Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAAAGHLH	9	Unmodified	_AAAAAGHLH_					0	0	0		ENST00000378322.7_1_1:3548028-3548130:-|nuORF	ENST00000378322.7_1_1:3548028-3548130:-|nuORF	ENST00000378322.7_1_1:3548028-3548130:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2299499511719	2	409.717019	817.419485	-0.41297	-0.0001692	4.0036	0.0016403	3.5906	0.0014711	409.7184825918687	25.328	0.86695	25.294	24.815	25.682	-0.034395					29	20	2	0	0	0	0.024289	1	1125	1125		60.404	8.1045	1	92523			0	13236	0	0	0	0					0.003472090975151332
AAAAAGHLH	9	Unmodified	_AAAAAGHLH_					0	0	0		ENST00000378322.7_1_1:3548028-3548130:-|nuORF	ENST00000378322.7_1_1:3548028-3548130:-|nuORF	ENST00000378322.7_1_1:3548028-3548130:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	409.717019	817.419485	1.1878	0.00048666	-0.0089882	-3.6826E-06	1.1788	0.00048298	409.7166748718501	25.179	0.58794	25.259	24.871	25.459	0.080088	-0.017377	-0.0013934	NaN	60.404	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92504			1	13236	0	0							0.003472090975151332
AAAARSASI	9	Unmodified	_AAAARSASI_					0	0	0			REV__ENSG00000113013|ENST00000297185|HSPA9	REV__ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.2300720214844	2	409.229959	816.445365	0.36569	0.00014965	-0.0052355	-2.1425E-06	0.36045	0.00014751	409.2297793962217	24.895	0.67742	24.895	24.608	25.285	0					39	15	4	0	0	0	0.67244	1	1129	1129		47.96	7.3869	1	957220	+		2	22037	1	1	1	1					0.0298005854914436
AAAARSASI	9	Unmodified	_AAAARSASI_					0	0	0			REV__ENSG00000113013|ENST00000297185|HSPA9	REV__ENSG00000113013|ENST00000297185|HSPA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.51971435546875	2	409.229959	816.445365	0.36569	0.00014965	-0.0052355	-2.1425E-06	0.36045	0.00014751	409.2297793962217	24.895	0.67742	24.895	24.608	25.285	0					39	15	4	0	0	0	0.024367	1	1107	1107		44.377	24.38	1	957220	+		3	22037	1	1	2	2					0.0298005854914436
AAAARSASI	9	Unmodified	_AAAARSASI_					0	0	0			REV__ENSG00000113013|ENST00000297185|HSPA9	REV__ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.2299499511719	2	409.229959	816.445365	-0.63385	-0.00025939	1.0671	0.00043668	0.43322	0.00017729	409.23030218954614	24.916	0.55668	24.882	24.681	25.238	-0.034395					27	12	3	0	0	0	0.53979	1	1125	1125		56.721	12.19	1	1107000	+		4	22037	1	1	3	3					0.0298005854914436
AAAASLAAPGA	11	Unmodified	_AAAASLAAPGA_					0	0	0			REV__ENST00000451739.6_2_11:20385357-20385459:+|nuORF	REV__ENST00000451739.6_2_11:20385357-20385459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7798767089844	2	435.737617	869.460681	-0.41005	-0.00017867	0.92568	0.00040335	0.51563	0.00022468	435.7378991191487	40.876	0.64494	40.741	40.454	41.099	-0.13554					40	16	3	0	0	0	0.024766	1	3565	3565		35.618	11.416	1	2558100	+		5	32724	2	2	4	4					0.020729253463287023
AAADETLRLW	10	Unmodified	_AAADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.3013916015625	2	573.301113	1144.58767	0.95207	0.00054582	-1.2084	-0.00069278	-0.25633	-0.00014696	573.3003528274588	67.975	1.0608	67.72	67.412	68.472	-0.25516					45	25	2	0	0	0	0.0029293	3	7835	7824;7835;7848		185.72	94.453	1	2438100			6	3625	3	3	5;6;7	6					0.02116226500652374
AAADETLRLW	10	Unmodified	_AAADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.30078125	2	573.301113	1144.58767	0.1576	9.0354E-05	-0.41243	-0.00023645	-0.25483	-0.00014609	573.3007982608405	67.971	0.96991	67.737	67.429	68.399	-0.23376					38	23	2	0	0	0	0.076563	3	7829	7829;7840;7855		141.52	51.151	1	2399600			7	3625	3	3	8;9;10	8					0.02116226500652374
AAADETLRLW	10	Unmodified	_AAADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.3013916015625	2	573.301113	1144.58767	0.038523	2.2085E-05	-0.26212	-0.00015027	-0.22359	-0.00012819	573.3008332463367	67.937	1.0124	67.699	67.378	68.39	-0.23814					55	24	4	0	0	0	0.031334	3	7831	7819;7831;7843		154.12	52.518	1	2660200			8	3625	3	3	11;12;13	12					0.02116226500652374
AAADSAVRLW	10	Unmodified	_AAADSAVRLW_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2821655273438	2	530.282723	1058.55089	0.85456	0.00045316	0.43767	0.00023209	1.2922	0.00068525	530.2821652348465	59.736	0.85133	59.538	59.132	59.983	-0.19742					57	21	5	0	0	0	0.031334	3	6588	6579;6588;6602		154.12	24.936	1	2712100			9	4824	4	4	14;15;16	15					0.023959746747550525
AAADSAVRLW	10	Unmodified	_AAADSAVRLW_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2822875976562	2	530.282723	1058.55089	0.15406	8.1698E-05	1.6272	0.00086287	1.7813	0.00094457	530.2825139187867	59.656	0.92046	59.48	59.078	59.998	-0.1761					62	23	5	0	0	0	0.014535	2	6587	6576;6587		167.23	82.241	1	2986500			10	4824	4	4	17;18	18					0.023959746747550525
AAADSAVRLW	10	Unmodified	_AAADSAVRLW_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000540135.5_1_18:33709896-33719635:+|nuORF;ENST00000535488.5_1_18:33709896-33718439:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2825317382812	2	530.282723	1058.55089	0.091886	4.8726E-05	-0.10872	-5.7651E-05	-0.016831	-8.9253E-06	530.28248556477	59.76	0.85933	59.512	59.05	59.909	-0.24842					50	21	4	0	0	0	0.031334	2	6589	6576;6589		154.12	52.376	1	2523500			11	4824	4	4	19;20	20					0.023959746747550525
AAAILGLVAM	10	Unmodified	_AAAILGLVAM_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2804260253906	2	465.278063	928.541574	0.58248	0.00027101	3.7335	0.0017371	4.316	0.0020081	465.2796843838928	87.889	1.2768	87.859	87.495	88.772	-0.029808					82	30	4	0	0	0	1.1309	1	11070	11070		26.796	0	1	1985900			12	7116	5	5	21	21					0.07444490064870024
AAALKIKFSN	10	Unmodified	_AAALKIKFSN_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8180541992188	2	531.818941	1061.62333	-0.35753	-0.00019014	-3.594	-0.0019114	-3.9516	-0.0021015	531.8171725070692	99.857	0.84225	99.867	99.223	100.07	0.010117					39	20	3	0	0	0	1.0002	1	12725	12725		45.972	0	1	906920	+		13	27255	6	6	22	22					0.09498308748334239
AAANVVRNI	9	Unmodified	_AAANVVRNI_					0	0	0		ENST00000464863.1_1_6:32825734-32826344:+|nuORF;ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.8100891113281	2	464.272158	926.529764	-0.46854	-0.00021753	-1.2313	-0.00057165	-1.6998	-0.00078917	464.27146364599406	38.952	0.6926	38.853	38.398	39.091	-0.098755					31	18	2	0	0	0	0.024354	1	3281	3281		38.806	0	1	1053500			14	10767	7	7	23	23					0.06356009365902082
AAANVVRNI	9	Unmodified	_AAANVVRNI_					0	0	0		ENST00000464863.1_1_6:32825734-32826344:+|nuORF;ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.8102722167969	2	464.272158	926.529764	-0.34351	-0.00015948	-1.481	-0.00068758	-1.8245	-0.00084706	464.27140150939397	39.085	0.77647	39.109	38.608	39.385	0.023727					33	20	2	0	0	0	0.022756	1	3278	3278		68.787	32.34	1	1227900			15	10767	7	7	24	24					0.06356009365902082
AAANVVRNI	9	Unmodified	_AAANVVRNI_					0	0	0		ENST00000464863.1_1_6:32825734-32826344:+|nuORF;ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.272158	926.529764	-0.59124	-0.0002745	-1.9503	-0.00090545	-2.5415	-0.0011799	464.27111489766355	39.037	0.65281	38.814	38.497	39.149	-0.22311	-0.11167	-0.00047453	NaN	68.787	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536610			16	10767	7	7							0.06356009365902082
AACSPRPCLR	10	Unmodified	_AACSPRPCLR_					0	0	0		ENST00000371712.3_1_9:139333928-139334213:-|nuORF	ENST00000371712.3_1_9:139333928-139334213:-|nuORF	ENST00000371712.3_1_9:139333928-139334213:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.2789306640625	2	537.270778	1072.527	-0.53523	-0.00028756	3.6026	0.0019356	3.0674	0.001648	537.2723732748457	25.17	0.68646	25	24.602	25.288	-0.17078					32	15	3	0	0	0	0.03519	1	1109	1109		36.447	0	1	306010			17	13012	8	8	25	25					-0.006359053549431337
AACVIFMLL	9	Unmodified	_AACVIFMLL_					0	0	0			REV__ENSG00000183160|ENST00000392806|TMEM119	REV__ENSG00000183160|ENST00000392806|TMEM119	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.277099609375	2	490.769017	979.523481	0.032946	1.6169E-05	-1.8838	-0.00092451	-1.8508	-0.00090834	490.7680809111607	76.594	0.3437	76.425	76.266	76.61	-0.16854					12	7	2	0	0	0	0.024475	1	9066	9066		39.021	18.54	1	59862	+		18	27547	9	9	26	26					0.032900318185056676
AADETLRLW	9	Unmodified	_AADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.782470703125	2	537.782556	1073.55056	-0.52197	-0.0002807	0.17477	9.3986E-05	-0.3472	-0.00018672	537.7825426823568	66.524	0.63062	66.275	65.9	66.531	-0.24839					48	17	4	0	0	0	0.013065	4	7628	7617;7628;7640;7653		180.93	89.291	1	7241300			19	3625	10	10	27;28;29;30	28					0.016725549548937124
AADETLRLW	9	Unmodified	_AADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7828979492188	2	537.782556	1073.55056	-0.91193	-0.00049042	0.59233	0.00031854	-0.3196	-0.00017188	537.7828306960621	66.501	0.69095	66.277	65.824	66.514	-0.22374					49	17	4	0	0	0	0.013065	5	7643	7620;7632;7643;7656;7668		185.55	68.646	1	7839300			20	3625	10	10	31;32;33;34;35	33					0.016725549548937124
AADETLRLW	9	Unmodified	_AADETLRLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7831420898438	2	537.782556	1073.55056	-1.1456	-0.0006161	0.69702	0.00037484	-0.44861	-0.00024125	537.7828877451624	66.505	0.50775	66.26	66.011	66.519	-0.24517					41	14	4	0	0	0	0.014034	4	7625	7615;7625;7637;7650		166.68	59.84	1	7345400			21	3625	10	10	36;37;38;39	37					0.016725549548937124
AADLMISGVP	10	Oxidation (M)	_AADLM(Oxidation (M))ISGVP_		AADLM(1)ISGVP		AADLM(91)ISGVP	0	0	1		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.25042724609375	2	495.252243	988.489932	-1.1345	-0.00056188	-2.3204	-0.0011492	-3.455	-0.0017111	495.25099400720813	68.746	1.5625	68.484	68.021	69.584	-0.26166					79	37	4	0	0	0	0.47726	2	7948	7948;7973		90.777	21.99	1	3800400			22	16130	11	11	40;41	40		532			-0.004772984196733887
AADLMISGVP	10	Oxidation (M)	_AADLM(Oxidation (M))ISGVP_		AADLM(1)ISGVP		AADLM(85)ISGVP	0	0	1		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2507629394531	2	495.252243	988.489932	0.17161	8.4989E-05	-3.8494	-0.0019064	-3.6778	-0.0018214	495.25025486167794	68.692	1.1379	68.462	68.039	69.177	-0.23048					73	27	4	0	0	0	0.52982	2	7944	7931;7944		84.916	10.345	1	4785100			23	16130	11	11	42;43	43		532			-0.004772984196733887
AAFEKQVL	8	Unmodified	_AAFEKQVL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.25799560546875	2	453.258185	904.501818	-0.61152	-0.00027718	0.48815	0.00022126	-0.12337	-5.5919E-05	453.2583388328776	45.018	0.75699	44.919	44.633	45.39	-0.099445					49	20	4	0	0	0	0.28835	3	4225	4225;4237;4250		116.9	29.149	1	2876500			24	4149	12	12	44;45;46	44					0.04574686385797122
AAFEKQVL	8	Unmodified	_AAFEKQVL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.2577819824219	2	453.258185	904.501818	-0.32787	-0.00014861	-0.14337	-6.4983E-05	-0.47124	-0.00021359	453.2579935479995	45.168	0.70237	44.915	44.59	45.292	-0.25252					42	18	4	0	0	0	0.34573	2	4242	4242;4254		104.75	21.459	1	2717500			25	4149	12	12	47;48	47					0.04574686385797122
AAFEKQVL	8	Unmodified	_AAFEKQVL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.2580261230469	2	453.258185	904.501818	-0.41261	-0.00018702	-0.023786	-1.0781E-05	-0.43639	-0.0001978	453.25803917782565	45.126	0.61313	44.915	44.637	45.25	-0.21109					46	16	4	0	0	0	0.29644	2	4247	4235;4247		113.41	19.344	1	2574400			26	4149	12	12	49;50	50					0.04574686385797122
AAGGGGGD	8	Unmodified	_AAGGGGGD_					0	0	0		ENSG00000123407|ENST00000243103|HOXC12	REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.3138427734375	1	561.22633	560.219054	-0.22632	-0.00012702	3.513	0.0019716	3.2866	0.0018446	561.2281935805336	70.752	0.96962	70.763	70.465	71.434	0.010735					37	23	2	0	0	0	0.027866	1	8466	8466		8.2313	0	1	681280	+		27	21902	13	13	51	51					-0.07864685289939644
AAGGIVTGAL	10	Unmodified	_AAGGIVTGAL_					0	0	0			REV__nc|ENSG00000186810|P49682-2|CXCR3	REV__nc|ENSG00000186810|P49682-2|CXCR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.24267578125	2	415.242535	828.470518	0.022148	9.1967E-06	0.50068	0.0002079	0.52283	0.0002171	415.2426082575322	35.286	0.66651	35.286	34.981	35.647	0					49	17	4	0	0	0	0.65054	1	2697	2697		71.296	4.8664	1	2510100	+		28	37028	14	14	52	52					0.049421133517171256
AAGGIVTGAL	10	Unmodified	_AAGGIVTGAL_					0	0	0			REV__nc|ENSG00000186810|P49682-2|CXCR3	REV__nc|ENSG00000186810|P49682-2|CXCR3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	415.242535	828.470518	0.022148	9.1967E-06	0.50068	0.0002079	0.52283	0.0002171	415.2426082575322	35.286	0.66651	35.286	34.981	35.647	0	0.11073	-0.00033548	NaN	71.296	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2510100	+		29	37028	14	14							0.049421133517171256
AAGGIVTGAL	10	Unmodified	_AAGGIVTGAL_					0	0	0			REV__nc|ENSG00000186810|P49682-2|CXCR3	REV__nc|ENSG00000186810|P49682-2|CXCR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	415.242535	828.470518	-0.35171	-0.00014605	0.85651	0.00035566	0.50479	0.00020961	415.24273052494226	35.094	0.74322	35.138	34.832	35.575	0.044056	-0.03707	-3.9975E-05	NaN	71.296	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2353700	+		30	37028	14	14							0.049421133517171256
AAGGLLYLV	9	Unmodified	_AAGGLLYLV_					0	0	0			REV__ENSG00000152315|ENST00000282146|KCNK13	REV__ENSG00000152315|ENST00000282146|KCNK13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2481384277344	2	438.763104	875.511654	0.54223	0.00023791	-3.4278	-0.001504	-2.8856	-0.0012661	438.76118901170594	32.88	0.34821	32.943	32.728	33.076	0.062885					11	8	2	0	0	0	0.024541	1	2280	2280		21.702	7.0382	1	40839	+		31	24833	15	15	53	53					0.06891874391180863
AAGGWSRTTHR	11	Unmodified	_AAGGWSRTTHR_					0	0	0		ENST00000319380.11_2_17:74385722-74385845:-|nuORF	ENST00000319380.11_2_17:74385722-74385845:-|nuORF	ENST00000319380.11_2_17:74385722-74385845:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.539127	1198.59555	0.23558	9.4359E-05	4.1016	0.0016429	4.3372	0.0017372	400.5408975443591	22.125	0.28943	22.05	21.793	22.082	-0.075296					7	5	2	0	0	0	0.024787	1	739	739		58.63	0	1	19435			32	12184	16	16	54	54					0.004197985407699889
AAGLHYIGLF	10	Unmodified	_AAGLHYIGLF_					0	0	0			REV__ENSG00000006757|ENST00000381042|PNPLA4	REV__ENSG00000006757|ENST00000381042|PNPLA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2973022460938	2	531.292559	1060.57057	-0.8155	-0.00043327	3.6927	0.0019619	2.8772	0.0015286	531.2943695160645	43.197	0.74022	42.96	42.679	43.419	-0.23737					50	19	4	0	0	0	0.72076	1	3935	3935		65.897	5.6035	1	2319200	+		33	19847	17	17	55	55					0.04270350685487756
AAGLHYIGLF	10	Unmodified	_AAGLHYIGLF_					0	0	0			REV__ENSG00000006757|ENST00000381042|PNPLA4	REV__ENSG00000006757|ENST00000381042|PNPLA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.297119140625	2	531.292559	1060.57057	-0.84301	-0.00044789	3.7493	0.001992	2.9063	0.0015441	531.2943546683579	43.243	0.69933	43.017	42.714	43.413	-0.22597					47	18	3	0	0	0	0.59161	1	3936	3936		77.944	20.133	1	2307700	+		34	19847	17	17	56	56					0.04270350685487756
AAGPRPHAPAL	11	Unmodified	_AAGPRPHAPAL_					0	0	0		ENST00000486360.1_1_1:203045208-203045709:+|nuORF	ENST00000486360.1_1_1:203045208-203045709:+|nuORF	ENST00000486360.1_1_1:203045208-203045709:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2979125976562	2	529.298707	1056.58286	0.1048	5.5473E-05	-1.9997	-0.0010585	-1.8949	-0.001003	529.2974682186262	106.31	0.71573	106.31	106.01	106.72	0					55	26	4	0	0	0	1.0399	1	13670	13670		27.882	3.3631	1	603100			35	15347	18	18	57	57					0.056833871485423515
AAGRAAKMAE	10	Unmodified	_AAGRAAKMAE_					0	0	0		ENSG00000240445|ENST00000395675|FOXO3B	ENSG00000240445|ENST00000395675|FOXO3B	ENSG00000240445|ENST00000395675|FOXO3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2694396972656	2	488.255651	974.496749	-0.03006	-1.4677E-05	1.3137	0.00064142	1.2836	0.00062675	488.2541960843558	53.563	0.21582	53.563	53.439	53.655	0					6	5	2	0	0	0	0.03519	1	5812	5812		19.997	12.803	1	33374			36	10770	19	19	58	58					0.008480592515297758
AAGRADDRRW	10	Unmodified	_AAGRADDRRW_					0	0	0		ENST00000464665.1_1_1:6609570-6614245:-|nuORF	ENST00000464665.1_1_1:6609570-6614245:-|nuORF	ENST00000464665.1_1_1:6609570-6614245:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	587.2965698242188	2	587.297227	1172.5799	0.44226	0.00025974	-2.9714	-0.0017451	-2.5292	-0.0014854	587.2954195931204	73.529	0.49594	73.539	73.217	73.713	0.0096512					44	12	5	0	0	0	1.1082	1	8907	8907		14.865	0	1	12280000			37	14767	20	20	59	59					0.0005151202374236163
AAGSLALCLLL	11	Unmodified	_AAGSLALCLLL_					0	0	0			REV__ENST00000545700.5_1_12:6561414-6561684:+|nuORF	REV__ENST00000545700.5_1_12:6561414-6561684:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2994384765625	2	522.809728	1043.6049	2.9073	0.00152	0.54447	0.00028465	3.4518	0.0018046	522.8099137453165	17.573	0.29751	17.573	17.399	17.697	0					8	5	2	0	0	0	0.024812	1	164	164		21.96	2.5999	1	19495	+		38	23924	21	21	60	60					0.08484430782095842
AAGSLALCLLL	11	Unmodified	_AAGSLALCLLL_					0	0	0			REV__ENST00000545700.5_1_12:6561414-6561684:+|nuORF	REV__ENST00000545700.5_1_12:6561414-6561684:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.809728	1043.6049	0.87639	0.00045819	2.6567	0.0013889	3.5331	0.0018471	522.8109943012244	17.816	0.20045	17.662	17.557	17.758	-0.15403	0.044563	0.0008812	NaN	21.96	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12575	+		39	23924	21	21							0.08484430782095842
AAGSSLLVRTA	11	Unmodified	_AAGSSLLVRTA_					0	0	0			REV__ENST00000378566.5_1_9:35108652-35115681:-|nuORF	REV__ENST00000378566.5_1_9:35108652-35115681:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3031616210938	2	523.303655	1044.59276	0.825	0.00043173	-0.64847	-0.00033935	0.17653	9.238E-05	523.3031643643998	100.05	1.0024	99.921	99.358	100.36	-0.12503					50	30	3	0	0	0	1.0017	1	12425	12425		36.447	2.5251	1	934390	+		40	31408	22	22	61	61					0.07224530363305348
AAHAKTKV	8	Unmodified	_AAHAKTKV_					0	0	0		nc|ENSG00000170469|Q86W54-2|SPATA24;ENSG00000170469|ENST00000450845|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.742431640625	2	413.250695	824.486836	1.0939	0.00045205	2.6637	0.0011008	3.7576	0.0015528	413.25128673873513	37.433	0.32658	37.433	37.233	37.559	0					10	8	2	0	0	0	0.027866	1	3057	3057		18.324	5.3652	1	48975			41	8044	23	23	62	62					0.06757239308467433
AAHHVLHPP	9	Unmodified	_AAHHVLHPP_					0	0	0			REV__POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	REV__POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2644958496094	2	489.767043	977.519533	-0.20444	-0.00010013	-1.1725	-0.00057425	-1.3769	-0.00067438	489.76624005031374	50.684	0.40329	50.684	50.479	50.882	0					16	11	2	0	0	0	0.024389	1	5355	5355		49.211	13.593	1	544320	+		42	27675	24	24	63	63					0.02987446431313856
AAHHVLHPP	9	Unmodified	_AAHHVLHPP_					0	0	0			REV__POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	REV__POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.767043	977.519533	0.42475	0.00020803	-2.5693	-0.0012584	-2.1445	-0.0010503	489.76606068983716	51.06	0.41048	50.783	50.48	50.891	-0.27643	0.059527	-0.0010705	NaN	39.021	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246100	+		43	27675	24	24							0.02987446431313856
AAHHVLHPP	9	Unmodified	_AAHHVLHPP_					0	0	0			REV__POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	REV__POU3F2|p.L293Wfs*24|1|0.27|ENSG00000184486|chr6:98835746-98835746|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.767043	977.519533	0.7342	0.00035959	-1.3868	-0.00067921	-0.65259	-0.00031962	489.76611695651223	50.885	0.40995	50.704	50.498	50.908	-0.18071	-0.019839	8.7794E-05	NaN	39.021	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218620	+		44	27675	24	24							0.02987446431313856
AAHILCPEAW	10	Unmodified	_AAHILCPEAW_					0	0	0			REV__RNPEP|p.D257H|1|0.35|ENSG00000176393|chr1:201996178-201996178|G/C|missense_variant	REV__RNPEP|p.D257H|1|0.35|ENSG00000176393|chr1:201996178-201996178|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.8184814453125	2	555.773677	1109.5328	-0.61364	-0.00034104	0.74242	0.00041262	0.12878	7.1574E-05	555.7741486838805	60.462	0.71611	60.208	59.868	60.584	-0.25373					23	17	2	0	0	0	0.03519	1	6747	6747		55.504	23.549	1	153190	+		45	37448	25	25	64	64					-0.017584835716206726
AAHMAATAILN	11	Unmodified	_AAHMAATAILN_					0	0	0		ENSG00000186487|ENST00000647738|MYT1L;nc|ENSG00000186487|Q9UL68-4|MYT1L;ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000186487|ENST00000647738|MYT1L;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000186487|ENST00000647738|MYT1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2994995117188	2	542.284408	1082.55426	-1.9888	-0.0010785	1.6493	0.00089439	-0.33945	-0.00018408	542.788167849242	65.094	0.64594	64.832	64.455	65.101	-0.2626					22	16	2	0	0	0	0.024768	1	7673	7673		39.253	11.371	1	383440			46	9555;18618	26	26	65	65					0.016289014571157168
AAIDCVKKRMS	11	Unmodified	_AAIDCVKKRMS_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	611.356201171875	2	611.32575	1220.63695	-0.52583	-0.00032145	4.4227	0.0027037	3.8969	0.0023823	611.3289139574838	95.146	0.56129	94.994	94.581	95.142	-0.15186					15	12	2	0	0	0	0.02478	1	11694	11694		22.58	0	1	41922	+		47	20301	27	27	66	66					0.035454751935958484
AAINPELLQLL	11	Unmodified	_AAINPELLQLL_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C;ENST00000493027.5_1_1:45205556-45221765:+|nuORF;ENST00000480574.1_1_1:45212428-45216012:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.856201171875	2	597.858264	1193.70197	-0.69485	-0.00041542	-2.7318	-0.0016332	-3.4267	-0.0020487	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.97926	1	11664	11664		41.427	0.64845	1	4386000			48	5597	28	28	67	67					0.11287116262769814
AAIPAALPS	9	Unmodified	_AAIPAALPS_					0	0	0		ENSG00000135929|ENST00000258415|CYP27A1;ENST00000494263.5_1_2:219646839-219678911:+|nuORF	ENSG00000135929|ENST00000258415|CYP27A1	ENSG00000135929|ENST00000258415|CYP27A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2403259277344	2	405.739628	809.464704	-0.37973	-0.00015407	-0.0056535	-2.2938E-06	-0.38538	-0.00015636	405.73949914768883	62.765	0.58734	62.507	62.289	62.876	-0.25824					22	17	2	0	0	0	0.88411	1	7075	7075		33.516	1.5607	1	637450			49	4955	29	29	68	68					0.05235014840025087
AAKAVQTQ	8	Unmodified	_AAKAVQTQ_					0	0	0			REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.5384216308594	2	408.732335	815.450116	-0.12691	-5.1871E-05	-1.14	-0.00046596	-1.2669	-0.00051784	408.73108555139464	30.907	0.25046	30.729	30.54	30.791	-0.17818					8	5	2	0	0	0	0.027866	1	1981	1981		16.473	0	1	29356	+		50	24141	30	30	69	69					0.03500942691914588
AAKKPPVTF	9	Unmodified	_AAKKPPVTF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7894592285156	2	479.789653	957.564752	0.31592	0.00015158	-0.65642	-0.00031495	-0.3405	-0.00016337	479.78906097039305	33.829	0.9388	33.605	33.28	34.219	-0.22412					65	23	4	0	0	0	0.39228	3	2438	2438;2447;2459		66.429	23.565	1	2064400			51	5147	31	31	70;71;72	70					0.08427252173839861
AAKKPPVTF	9	Unmodified	_AAKKPPVTF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7895202636719	2	479.789653	957.564752	-0.41778	-0.00020044	-0.1099	-5.2731E-05	-0.52768	-0.00025318	479.78935187578924	33.812	1.1195	33.612	33.171	34.29	-0.20019					64	28	4	0	0	0	0.31037	2	2447	2434;2447		74.255	24.719	1	2149300			52	5147	31	31	73;74	74					0.08427252173839861
AAKKPPVTF	9	Unmodified	_AAKKPPVTF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7895202636719	2	479.789653	957.564752	-1.0362	-0.00049718	0.53292	0.00025569	-0.50332	-0.00024149	479.7896882208018	33.78	1.1025	33.604	33.311	34.413	-0.17557					67	27	4	0	0	0	0.17822	3	2418	2418;2431;2442		93.195	45.28	1	2196000			53	5147	31	31	75;76;77	75					0.08427252173839861
AAKNLQEAEEW	11	Unmodified	_AAKNLQEAEEW_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	644.8118896484375	2	644.812042	1287.60953	-2.0847	-0.0013442	1.9054	0.0012286	-0.17925	-0.00011558	644.8131981099525	46.942	0.70566	46.846	46.572	47.278	-0.096649					54	18	4	0	0	0	1.011E-09	3	4577	4556;4566;4577		204.79	89.893	1	4669300			54	992	32	32	78;79;80	80					-0.022770135414248216
AAKNLQEAEEW	11	Unmodified	_AAKNLQEAEEW_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	644.8123779296875	2	644.812042	1287.60953	0.36047	0.00023244	-0.46795	-0.00030174	-0.10748	-6.9302E-05	644.8116858201313	47.333	0.7693	47.063	46.764	47.534	-0.26939					65	20	5	0	0	0	1.9947E-08	3	4613	4603;4613;4625		192.64	62.71	1	5019100			55	992	32	32	81;82;83	82					-0.022770135414248216
AAKNLQEAEEW	11	Unmodified	_AAKNLQEAEEW_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	644.8121337890625	2	644.812042	1287.60953	-0.76432	-0.00049285	0.3741	0.00024122	-0.39022	-0.00025162	644.8121970578824	47.111	0.84127	46.917	46.609	47.45	-0.19387					66	22	4	0	0	0	1.8824E-07	3	4589	4577;4589;4603		187.5	66.897	1	4917900			56	992	32	32	84;85;86	85					-0.022770135414248216
AAKRLDGL	8	Unmodified	_AAKRLDGL_					0	0	0			REV__ENSG00000171045|ENST00000524325|TSNARE1	REV__ENSG00000171045|ENST00000524325|TSNARE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.25592041015625	2	422.255977	842.497401	0.51542	0.00021764	-1.1683	-0.00049331	-0.65286	-0.00027567	422.2554645433403	21.78	0.94479	21.603	21.303	22.247	-0.17721					44	19	4	0	0	0	0.91239	1	721	721		50.025	0	1	643350	+		57	26533	33	33	87	87					0.06985221962884225
AAKVIETK	8	Unmodified	_AAKVIETK_					0	0	0		ENSG00000072786|ENST00000176763|STK10;STK10|p.E72K|1|0.76|ENSG00000072786|chr5:172156731-172156731|C/T|missense_variant	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.24798583984375	2	430.26601	858.517468	-0.61248	-0.00026353	-0.41992	-0.00018068	-1.0324	-0.00044421	430.2659509385961	37.607	0.68396	37.398	37.153	37.837	-0.2092					25	17	2	0	0	0	0.027866	1	3011	3011		16.473	0	1	177720			58	1488	34	34	88	88					0.08254972902841473
AALAGRSGGP	10	Unmodified	_AALAGRSGGP_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7846984863281	2	428.735409	855.456264	-0.64383	-0.00027603	-3.7878	-0.001624	-4.4316	-0.0019	428.73372700383	26.216	0.091854	26.053	26.009	26.101	-0.16331					4	2	2	0	0	0	0.03519	1	1305	1305		116.9	37.191	1	114920			59	1876	35	35	89	89					0.022754609234198142
AALAKKLAA	9	Unmodified	_AALAKKLAA_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1;REV__ENSG00000124575|ENST00000244534|H1-3;REV__ENSG00000184357|ENST00000331442|H1-5	REV__ENSG00000124610|ENST00000244573|H1-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.78485107421875	2	428.78437	855.554188	0.088307	3.7865E-05	-0.32694	-0.00014019	-0.23864	-0.00010232	428.78435697552015	25.89	2.7582	25.719	25.371	28.129	-0.17078					166	69	5	0	0	0	0.17455	1	1257	1257		94.006	3.2298	1	61272000	+		60	22779;22775;27661	36	36	90	90					0.12063269519410369
AALAKKLAA	9	Unmodified	_AALAKKLAA_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1;REV__ENSG00000124575|ENST00000244534|H1-3;REV__ENSG00000184357|ENST00000331442|H1-5	REV__ENSG00000124610|ENST00000244573|H1-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.7846984863281	2	428.78437	855.554188	-0.69372	-0.00029746	0.20819	8.9268E-05	-0.48553	-0.00020819	428.78449169897465	26.12	2.3235	25.957	25.588	27.911	-0.16331					178	59	5	0	0	0	0.074956	1	1305	1305		119.56	4.0978	1	63823000	+		61	22779;22775;27661	36	36	91	91					0.12063269519410369
AALALTETW	9	Unmodified	_AALALTETW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2621765136719	2	488.260925	974.507297	0.22138	0.00010809	-0.43388	-0.00021185	-0.21251	-0.00010376	488.2606660011668	77.093	0.54057	76.825	76.552	77.093	-0.26806					29	13	3	0	0	0	0.074956	3	9154	9154;9165;9179		119.56	42.783	1	1026300			62	10724	37	37	92;93;94	92					0.01902365177613774
AALALTETW	9	Unmodified	_AALALTETW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.26165771484375	2	488.260925	974.507297	0.60704	0.00029639	-1.2458	-0.00060826	-0.63873	-0.00031187	488.2604026457149	77.072	0.50423	76.82	76.528	77.032	-0.25162					28	12	3	0	0	0	0.15889	2	9168	9168;9181		97.473	41.968	1	976760			63	10724	37	37	95;96	95					0.01902365177613774
AALALTETW	9	Unmodified	_AALALTETW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.2616271972656	2	488.260925	974.507297	-0.10148	-4.9549E-05	-0.57504	-0.00028077	-0.67652	-0.00033032	488.2606006824502	76.95	0.57045	76.781	76.482	77.052	-0.16854					32	13	4	0	0	0	0.062871	3	9136	9136;9149;9162		123.99	47.215	1	946160			64	10724	37	37	97;98;99	97					0.01902365177613774
AALKKALAA	9	Unmodified	_AALKKALAA_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.7842102050781	2	428.78437	855.554188	-0.285	-0.00012221	-0.082318	-3.5297E-05	-0.36732	-0.0001575	428.78441451476647	26.169	2.3345	25.933	25.636	27.97	-0.23603					158	58	5	0	0	0	0.049585	11	1330	1294;1306;1318;1330;1343;1355;1367;1379;1391;1403;1424		128.86	26.816	1	71778000			65	7808;4064	38	38	100;101;102;103;104;105;106;107;108;109;110	103					0.12063269519410369
AALKKALAA	9	Unmodified	_AALKKALAA_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.78448486328125	2	428.78437	855.554188	0.088307	3.7865E-05	-0.32694	-0.00014019	-0.23864	-0.00010232	428.78435697552015	25.89	2.7582	25.719	25.371	28.129	-0.17078					166	69	5	0	0	0	0.08613	5	1308	1245;1269;1281;1294;1308		115.46	23.268	1	61272000			66	7808;4064	38	38	111;112;113;114;115	115					0.12063269519410369
AALKKALAA	9	Unmodified	_AALKKALAA_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.78466796875	2	428.78437	855.554188	-0.69372	-0.00029746	0.20819	8.9268E-05	-0.48553	-0.00020819	428.78449169897465	26.12	2.3235	25.957	25.588	27.911	-0.16331					178	59	5	0	0	0	0.08613	11	1247	1247;1257;1269;1281;1293;1317;1331;1343;1355;1367;1399		115.46	30.099	1	63823000			67	7808;4064	38	38	116;117;118;119;120;121;122;123;124;125;126	116					0.12063269519410369
AALKRNAL	8	Unmodified	_AALKRNAL_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.78485107421875	2	428.771794	855.529036	0.092081	3.9482E-05	1.4793	0.0006343	1.5714	0.00067378	428.7725852707196	25.898	0.39673	25.728	25.499	25.896	-0.17078					17	10	3	0	0	0	0.027866	1	1257	1257		57.811	2.3071	1	274220			68	4380	39	39	127	127					0.09549214716832921
AALLERAL	8	Unmodified	_AALLERAL_					0	0	0		ENSG00000248487|ENST00000273596|ABHD14A;ABHD14A|p.R149W|1|0.35|ENSG00000248487|chr3:51980440-51980440|C/T|missense_variant	ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.78485107421875	2	428.766178	855.517802	0.095165	4.0804E-05	3.1586	0.0013543	3.2537	0.0013951	428.76758987121076	25.89	0.19328	25.719	25.542	25.735	-0.17078					7	4	2	0	0	0	0.027866	1	1257	1257		71.296	0	1	528240			69	10833	40	40	128	128					0.084263926227095
AALLQMLP	8	Unmodified	_AALLQMLP_					0	0	0		ENST00000477541.1_1_6:32918272-32920828:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA	ENST00000477541.1_1_6:32918272-32920828:-|nuORF	ENST00000477541.1_1_6:32918272-32920828:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7846984863281	2	428.751682	855.48881	-0.72835	-0.00031228	-1.0844	-0.00046492	-1.8127	-0.00077721	428.7515206772056	26.043	0.41666	25.88	25.716	26.133	-0.16331					18	12	2	0	0	0	0.027866	1	1305	1305		46.766	0	1	292580			70	10318	41	41	129	129					0.05528532002051634
AALNHPPT	8	Unmodified	_AALNHPPT_					0	0	0			REV__TMEM209|p.D119N|1|0.23|ENSG00000146842|chr7:130202068-130202068|C/T|missense_variant	REV__TMEM209|p.D119N|1|0.23|ENSG00000146842|chr7:130202068-130202068|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.71881103515625	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	1.0106	1	12094	12094		35.618	2.1027	1	3611200	+		71	37708	42	42	130	130					0.006966735204173347
AALNHPPT	8	Unmodified	_AALNHPPT_					0	0	0			REV__TMEM209|p.D119N|1|0.23|ENSG00000146842|chr7:130202068-130202068|C/T|missense_variant	REV__TMEM209|p.D119N|1|0.23|ENSG00000146842|chr7:130202068-130202068|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.7187805175781	2	410.719227	819.423902	0.96756	0.0003974	-1.8848	-0.00077414	-0.91727	-0.00037674	410.7183696284328	96.072	1.6868	95.949	95.421	97.108	-0.12305					87	38	4	0	0	0	1.0574	1	11860	11860		26.796	3.7536	1	1564100	+		72	37708	42	42	131	131					0.006966735204173347
AALPAAALW	9	Unmodified	_AALPAAALW_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.2563171386719	2	442.255446	882.496338	0.30193	0.00013353	-0.80748	-0.00035711	-0.50555	-0.00022358	442.2550059592334	82.405	0.65152	82.185	81.914	82.565	-0.22015					34	14	3	0	0	0	0.32257	1	9922	9922		72.62	12.216	1	764580			73	7818	43	43	132	132					0.05039007593984479
AALPAAALW	9	Unmodified	_AALPAAALW_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.25616455078125	2	442.255446	882.496338	-0.43597	-0.00019281	0.080202	3.547E-05	-0.35577	-0.00015734	442.25534097545534	82.363	0.60847	82.222	81.913	82.522	-0.14014					31	13	3	0	0	0	0.65391	1	9916	9916		49.211	6.7363	1	800570			74	7818	43	43	133	133					0.05039007593984479
AALPAAALW	9	Unmodified	_AALPAAALW_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.255446	882.496338	0.054588	2.4142E-05	-0.57215	-0.00025304	-0.51756	-0.0002289	442.25506691461845	82.403	0.60681	82.222	81.898	82.505	-0.18079	0.012258	-7.7811E-05	NaN	72.62	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748510			75	7818	43	43							0.05039007593984479
AALPVRAM	8	Unmodified	_AALPVRAM_					0	0	0		ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	ENSG00000196371|ENST00000358752|FUT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.7619323730469	2	414.741648	827.468743	1.0221	0.00042391	-3.414	-0.0014159	-2.3919	-0.00099201	414.740041942458	87.633	0.19864	87.633	87.491	87.69	0					7	4	3	0	0	0	0.027866	1	11012	11012		46.766	25.064	1	299160			76	9861	44	44	134	134					0.04810781062110436
AALTAFIKADL	11	Unmodified	_AALTAFIKADL_					0	0	0		ENSG00000119686|ENST00000238667|FLVCR2;ENST00000556745.1_1_14:76107286-76108289:+|nuORF;nc|ENSG00000119686|Q9UPI3-2|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3303833007812	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0392	1	11176	11176		28.081	0.19925	1	4298500			77	3754	45	45	135	135					0.0881915819995811
AALVLQTIW	9	Unmodified	_AALVLQTIW_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.801513671875	2	507.80276	1013.59097	-1.1397	-0.00057876	0.12643	6.4202E-05	-1.0133	-0.00051456	507.80262747924337	90.844	0.78628	90.689	90.432	91.219	-0.1552					48	18	4	0	0	0	0.013333	2	11132	11132;11145		176.41	83.215	1	1986400			78	38096	46	46	136;137	136					0.08471521345325073
AALVLQTIW	9	Unmodified	_AALVLQTIW_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.802001953125	2	507.80276	1013.59097	-0.72921	-0.0003703	-0.36438	-0.00018503	-1.0936	-0.00055533	507.8023889068046	90.906	0.7411	90.781	90.416	91.158	-0.12512					36	17	3	0	0	0	0.039744	2	11147	11147;11160		133.81	41.928	1	1843200			79	38096	46	46	138;139	138					0.08471521345325073
AALVLQTIW	9	Unmodified	_AALVLQTIW_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8019714355469	2	507.80276	1013.59097	0.15325	7.782E-05	-1.2902	-0.00065515	-1.1369	-0.00057733	507.8019008167045	90.901	0.6975	90.762	90.492	91.189	-0.13941					33	16	3	0	0	0	0.03849	3	11132	11132;11143;11157		134.81	41.615	1	1588300			80	38096	46	46	140;141;142	140					0.08471521345325073
AALVLTVPV	9	Unmodified	_AALVLTVPV_					0	0	0		ENST00000310389.5_1_5:175799647-175799779:+|nuORF	ENST00000310389.5_1_5:175799647-175799779:+|nuORF	ENST00000310389.5_1_5:175799647-175799779:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	2	441.786579	881.558604	-0.29735	-0.00013137	3.287	0.0014522	2.9897	0.0013208	441.7879427918054	40.843	1.9371	40.615	40.184	42.121	-0.2278					180	51	6	0	0	0	0.78069	1	3519	3519		40.573	7.057	1	18973000			81	12060	47	47	143	143					0.11308733942325944
AAMGLEQLPR	10	Unmodified	_AAMGLEQLPR_					0	0	0			REV__nc|ENSG00000162191|Q04323-2|UBXN1	REV__nc|ENSG00000162191|Q04323-2|UBXN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2957153320312	2	543.292233	1084.56991	-0.41254	-0.00022413	-2.6597	-0.001445	-3.0722	-0.0016691	543.2893100593053	18.382	0.29604	18.251	18.105	18.401	-0.13147					6	5	2	0	0	0	0.03519	1	283	283		49.442	8.6634	1	8738.3	+		82	36842	48	48	144	144					0.031011879741527082
AAMSVAQRV	9	Oxidation (M)	_AAM(Oxidation (M))SVAQRV_		AAM(1)SVAQRV		AAM(74)SVAQRV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7506103515625	2	474.750201	947.48585	-0.026759	-1.2704E-05	-0.77169	-0.00036636	-0.79845	-0.00037906	474.7500060898501	28.494	1.0364	28.494	28.113	29.149	0					84	24	5	0	0	0	0.31037	1	1647	1647		74.255	10.949	1	1235700			83	2984	49	49	145	145		111			0.01000656877261008
AAMSVAQRV	9	Oxidation (M)	_AAM(Oxidation (M))SVAQRV_		AAM(1)SVAQRV		AAM(74)SVAQRV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.7503662109375	2	474.750201	947.48585	0.010192	4.8385E-06	-0.79692	-0.00037834	-0.78673	-0.0003735	474.75001988225466	28.454	1.0051	28.45	28.117	29.122	-0.0042019					78	23	4	0	0	0	0.31037	1	1631	1631		74.255	15.473	1	1309800			84	2984	49	49	146	146		111			0.01000656877261008
AAMSVAQRV	9	Oxidation (M)	_AAM(Oxidation (M))SVAQRV_		AAM(1)SVAQRV		AAM(80)SVAQRV	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MSMS	OPSCC_39_ClassI_Rep-3	3	474.75079345703125	2	474.750201	947.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.007	1	28.088	27.588	28.588	0.080961								0	0	0	0.1574	1	1543	1543		79.713	15.505	1				85	2984	49	49	147	147		111			0.01000656877261008
AAMSVAQRV	9	Unmodified	_AAMSVAQRV_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7535705566406	2	466.752744	931.490935	-0.26916	-0.00012563	0.26113	0.00012188	-0.0080344	-3.7501E-06	466.7527372609892	37.462	0.63467	37.399	37.127	37.762	-0.063389					45	17	4	0	0	0	0.54416	1	3041	3041		56.434	8.7765	1	2409000			86	2984	49	50	148	148					0.02244960739869839
AANQCHIGL	9	Unmodified	_AANQCHIGL_					0	0	0			REV__nc|ENSG00000138698|P52306-2|RAP1GDS1	REV__nc|ENSG00000138698|P52306-2|RAP1GDS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2776794433594	2	463.729269	925.443985	0.36148	0.00016763	1.0387	0.00048168	1.4002	0.00064931	463.72926732298623	49.306	0.22088	49.306	49.141	49.362	0					7	5	2	0	0	0	0.024325	1	5078	5078		40.573	5.3719	1	62995	+		87	23889	50	51	149	149					-0.021718988112638726
AANRPTAVSAQ	11	Unmodified	_AANRPTAVSAQ_					0	0	0			REV__ENSG00000165471|ENST00000674931|MBL2	REV__ENSG00000165471|ENST00000674931|MBL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.2955932617188	2	543.288537	1084.56252	3.3462	0.0018179	-1.5778	-0.00085718	1.7684	0.00096075	543.2875098999108	18.4	0.19726	18.464	18.353	18.55	0.063307					5	3	2	0	0	0	0.024749	1	256	256		28.081	7.1346	1	6845	+		88	25888	51	52	150	150					0.023621716980642304
AANSLGLGL	9	Unmodified	_AANSLGLGL_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;KMT2D|p.Q3158Pfs*2|1|0.25|ENSG00000167548|chr12:49037880-49037883|CTCT/-|frameshift_variant;KMT2D|p.P3156Afs*20|1|0.6|ENSG00000167548|chr12:49037891-49037892|-/T|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.2300720214844	2	408.23471	814.454868	0.39758	0.00016231	0.6675	0.0002725	1.0651	0.0004348	408.2346832389817	24.894	0.60297	24.894	24.608	25.211	0					24	13	3	0	0	0	0.024386	1	1129	1129		25.45	5.4534	1	224430			89	7698	52	53	151	151					0.04021826834662079
AANSLGLGL	9	Unmodified	_AANSLGLGL_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;KMT2D|p.Q3158Pfs*2|1|0.25|ENSG00000167548|chr12:49037880-49037883|CTCT/-|frameshift_variant;KMT2D|p.P3156Afs*20|1|0.6|ENSG00000167548|chr12:49037891-49037892|-/T|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	408.23471	814.454868	1.4773	0.00060307	-0.064745	-2.6431E-05	1.4125	0.00057664	408.23440569207685	24.848	0.48207	24.927	24.731	25.213	0.078344	0.0051437	-0.00059981	NaN	25.45	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213950			90	7698	52	53							0.04021826834662079
AAPAAPHRSGT	11	Unmodified	_AAPAAPHRSGT_					0	0	0		ENST00000537321.5_1_9:34989748-34990541:+|nuORF	ENST00000537321.5_1_9:34989748-34990541:+|nuORF	ENST00000537321.5_1_9:34989748-34990541:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.2701416015625	2	518.270147	1034.52574	-0.78737	-0.00040807	0.43771	0.00022685	-0.34966	-0.00018122	518.2701968628271	25.722	0.66448	25.495	25.148	25.812	-0.22683					45	15	4	0	0	0	1.0017	1	1253	1253		36.447	0.82846	1	1837700			91	16371	53	54	152	152					0.009859198721869689
AAPAATHAAP	10	Unmodified	_AAPAATHAAP_					0	0	0		nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.2480163574219	2	439.229959	876.445365	-0.20455	-8.9846E-05	4.1744	0.0018335	3.9699	0.0017437	439.23138190000816	33.758	0.55739	33.758	33.454	34.011	0					21	14	2	0	0	0	0.03519	1	2438	2438		44.117	5.0953	1	200900			92	6765	54	55	153	153					0.0022005854912094946
AAPAKEQTIHE	11	Unmodified	_AAPAKEQTIHE_					0	0	0			REV__ENSG00000277399|ENST00000616987|GPR179	REV__ENSG00000277399|ENST00000616987|GPR179	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8114013671875	2	597.809302	1193.60405	-0.72866	-0.0004356	4.4154	0.0026396	3.6867	0.002204	597.8117225633295	73.811	0.54411	73.547	73.217	73.761	-0.26479					36	13	4	0	0	0	1.0718	1	8720	8720		19.104	6.1443	1	1406500	+		93	29204	55	56	154	154					0.014993076667678906
AAPAPKPR	8	Unmodified	_AAPAPKPR_					0	0	0		nc|ENSG00000122367|O75112-3|LDB3;nc|ENSG00000122367|O75112-2|LDB3;ENSG00000122367|ENST00000361373|LDB3;nc|ENSG00000122367|O75112-7|LDB3	nc|ENSG00000122367|O75112-3|LDB3	nc|ENSG00000122367|O75112-3|LDB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.23529052734375	2	404.245412	806.476272	-0.072354	-2.9249E-05	0.66807	0.00027007	0.59572	0.00024082	404.24559818871217	23.452	0.54052	23.391	23.229	23.77	-0.060862					19	12	2	0	0	0	0.027866	1	957	957		9.4706	0.64823	1	66001			94	3920	56	57	155	155					0.06529256654039273
AAPGPARSL	9	Unmodified	_AAPGPARSL_					0	0	0			REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF	REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2529602050781	2	420.240327	838.466101	-0.3877	-0.00016293	-1.8357	-0.00077144	-2.2234	-0.00093437	420.2411690166865	45.424	0.16534	45.275	45.181	45.346	-0.1488					6	4	2	0	0	0	0.020004	1	4379	4379		71.296	2.5089	1	64977	+		95	29281	57	58	156	156					0.040406489287988734
AAPGRLPK	8	Unmodified	_AAPGRLPK_					0	0	0			REV__ENSG00000164379|ENST00000296839|FOXQ1	REV__ENSG00000164379|ENST00000296839|FOXQ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5111999511719	2	405.253237	808.491922	-0.57919	-0.00023472	0.65628	0.00026596	0.077098	3.1244E-05	405.2533447585692	31.843	0.33572	31.686	31.569	31.904	-0.15772					12	7	2	0	0	0	0.027866	1	2145	2145		19.36	0	1	56702	+		96	25749	58	59	157	157					0.08001543171076264
AAPKIIWIN	9	Unmodified	_AAPKIIWIN_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3106079101562	2	513.310752	1024.60695	-1.3398	-0.00068773	1.0045	0.0005156	-0.33534	-0.00017214	513.3112509845884	64.95	1.5666	64.95	64.617	66.184	0					97	42	4	0	0	0	0.17455	2	7652	7652;7661		94.006	22.711	1	16693000	+		97	23912	59	60	158;159	158					0.09563227582248146
AAPKIIWIN	9	Unmodified	_AAPKIIWIN_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.310791015625	2	513.310752	1024.60695	-1.2133	-0.00062278	0.82882	0.00042544	-0.38444	-0.00019734	513.3111572772008	65.195	1.5009	64.932	64.612	66.113	-0.26301					106	40	4	0	0	0	0.25032	1	7692	7692		82.305	26.801	1	13176000	+		98	23912	59	60	160	160					0.09563227582248146
AAPKIIWIN	9	Unmodified	_AAPKIIWIN_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3109741210938	2	513.310752	1024.60695	-0.83253	-0.00042735	0.4909	0.00025198	-0.34163	-0.00017536	513.3109833319763	64.986	1.6108	65.023	64.555	66.166	0.037384					101	43	4	0	0	0	0.31247	1	7595	7595		73.975	13.003	1	14191000	+		99	23912	59	60	161	161					0.09563227582248146
AAPKIIWIN	9	Unmodified	_AAPKIIWIN_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	513.310752	1024.60695	-1.2133	-0.00062278	0.82882	0.00042544	-0.38444	-0.00019734	513.3111572772008	65.195	1.5009	64.932	64.612	66.113	-0.26301	-0.036562	6.1034E-05	NaN	94.006	106	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13176000	+		100	23912	59	60							0.09563227582248146
AAPLGSEPPL	10	Unmodified	_AAPLGSEPPL_					0	0	0		ENSG00000059915|ENST00000020673|PSD;nc|ENSG00000059915|A5PKW4-2|PSD	ENSG00000059915|ENST00000020673|PSD	ENSG00000059915|ENST00000020673|PSD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.2560729980469	2	476.260925	950.507297	-0.38462	-0.00018318	1.2186	0.00058037	0.83398	0.00039719	476.26110705141707	41.922	0.51271	41.69	41.391	41.904	-0.23186					21	13	2	0	0	0	0.03519	1	3709	3709		55.504	5.4797	1	168220			101	1228	60	61	162	162					0.030063651776117695
AAPLIPLSQQI	11	Unmodified	_AAPLIPLSQQI_					0	0	0		EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000595845.1_1_19:16552687-16582756:-|nuORF;ENST00000597559.5_1_19:16547732-16582756:-|nuORF	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	0.99553	1	11106	11106		37.812	1.3648	1	5880000			102	4251	61	62	163	163					0.10690847091291289
AAPLLTGLL	9	Unmodified	_AAPLLTGLL_					0	0	0			REV__nc|ENSG00000166923|O60565-2|GREM1	REV__nc|ENSG00000166923|O60565-2|GREM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.780029296875	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	0.64155	1	3469	3469		50.025	9.4519	1	6443300	+		103	26083	62	63	164	164					0.10388447425293634
AAPLVRGRRP	10	Unmodified	_AAPLVRGRRP_					0	0	0			REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.8401489257812	2	546.841074	1091.66759	0.3982	0.00021775	-2.0973	-0.0011469	-1.6991	-0.00092914	546.8399841843885	99.748	1.3784	99.613	99.184	100.56	-0.13526					99	37	6	0	0	0	1.1237	1	12353	12353		23.042	2.5607	1	10192000	+		104	29289	63	64	165	165					0.12542757685173456
AAPLVRGRRP	10	Unmodified	_AAPLVRGRRP_					0	0	0			REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.840087890625	2	546.841074	1091.66759	0.67566	0.00036948	-2.4362	-0.0013322	-1.7605	-0.00096274	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	1.1267	1	12406	12406		29.15	4.9468	1	9262700	+		105	29289	63	64	166	166					0.12542757685173456
AAPRAGSPPGP	11	Unmodified	_AAPRAGSPPGP_					0	0	0			REV__ENSG00000105737|ENST00000593562|GRIK5	REV__ENSG00000105737|ENST00000593562|GRIK5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.26116943359375	2	489.261791	976.509028	-0.53787	-0.00026316	0.02293	1.1219E-05	-0.51494	-0.00025194	489.2616767521639	46.064	0.73803	45.862	45.598	46.336	-0.20226					34	19	2	0	0	0	0.94988	1	4404	4404		47.96	0.043923	1	2878500	+		106	21561	64	65	167	167					0.019834189862422136
AAPSARPR	8	Unmodified	_AAPSARPR_					0	0	0		ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.23712158203125	2	413.238119	824.461684	0.092708	3.831E-05	0.22556	9.3211E-05	0.31827	0.00013152	413.23811756919946	76.351	3.9324	76.183	74.993	78.925	-0.16853					174	94	3	0	0	0	1.043	1	9132	9132		30.504	0	1	809840			107	10096	65	66	168	168					0.04243184505901354
AAPSMKVF	8	Unmodified	_AAPSMKVF_					0	0	0			REV__ENST00000356842.8_1_2:60689463-60695893:-|nuORF	REV__ENST00000356842.8_1_2:60689463-60695893:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.77490234375	2	425.728206	849.44186	0.18186	7.7422E-05	-2.9197	-0.001243	-2.7378	-0.0011656	425.72710859129177	42.096	0.36127	42.122	41.928	42.289	0.026012					15	10	2	0	0	0	0.027866	1	3802	3802		37.159	12.655	1	121080	+		108	30802	66	67	169	169					0.011116724509292908
AAQAVASAASA	11	Unmodified	_AAQAVASAASA_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2398986816406	2	459.237981	916.461409	0.25043	0.00011501	3.426	0.0015734	3.6765	0.0016884	459.2395438388513	110.53	0.27762	110.52	110.26	110.53	-0.011299					14	8	2	0	0	0	1.0521	1	13949	13949		24.519	1.4767	1	92125			109	6323	67	68	170	170					-0.00016280004626878508
AAQITQRKW	9	Unmodified	_AAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.311767578125	2	551.311815	1100.60908	-0.036208	-1.9962E-05	0.0072543	3.9994E-06	-0.028954	-1.5963E-05	551.3116334597169	32.152	0.60391	31.915	31.654	32.258	-0.23667					38	13	4	0	0	0	0.26413	2	2201	2191;2201		80.455	25.732	1	1069700			110	10724	68	69	171;172	172					0.06279656320020877
AAQITQRKW	9	Unmodified	_AAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3114624023438	2	551.311815	1100.60908	0.21288	0.00011736	-0.28927	-0.00015948	-0.07639	-4.2115E-05	551.3115402351526	32.18	0.77621	31.988	31.641	32.417	-0.19261					49	17	4	0	0	0	0.14024	2	2199	2189;2199		101.6	43.789	1	906900			111	10724	68	69	173;174	174					0.06279656320020877
AAQITQRKW	9	Unmodified	_AAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3125	2	551.311815	1100.60908	-0.44153	-0.00024342	0.19574	0.00010792	-0.24579	-0.00013551	551.3117694186557	32.109	0.62929	31.951	31.694	32.323	-0.15772					40	14	4	0	0	0	0.086035	2	2166	2166;2175		115.49	48	1	1132800			112	10724	68	69	175;176	175					0.06279656320020877
AAQSYPGY	8	Unmodified	_AAQSYPGY_					0	0	0		ENSG00000159387|ENST00000290552|IRX6	ENSG00000159387|ENST00000290552|IRX6	ENSG00000159387|ENST00000290552|IRX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.78485107421875	2	428.695418	855.376283	0.091617	3.9276E-05	2.909	0.0012471	3.0006	0.0012863	428.6966505254353	25.847	0.21618	25.677	25.621	25.837	-0.17078					8	5	2	0	0	0	0.027866	1	1257	1257		50.025	0	1	85104			113	6743	69	70	177	177					-0.057190254704323706
AARAAPAAAAR	11	Unmodified	_AARAAPAAAAR_					0	0	0		ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	ENSG00000176396|ENST00000390658|EID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7884216308594	2	498.788507	995.562461	-0.5002	-0.00024949	-0.16289	-8.1249E-05	-0.66309	-0.00033074	498.7884542741766	21.56	1.003	21.56	21.195	22.198	0					59	20	4	0	0	0	0.95882	1	685	685		45.972	5.1941	1	2404800			114	8636	70	71	178	178					0.06450216488735805
AARDLRPLCRA	11	Unmodified	_AARDLRPLCRA_					0	0	0		ENST00000473782.1_1_22:26878805-26879789:-|nuORF;ENST00000439453.5_1_22:26878136-26879789:-|nuORF;ENST00000479064.5_1_22:26878136-26879789:-|nuORF	ENST00000473782.1_1_22:26878805-26879789:-|nuORF	ENST00000473782.1_1_22:26878805-26879789:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.3475952148438	2	621.348406	1240.68226	-0.40239	-0.00025003	3.0382	0.0018878	2.6359	0.0016378	621.3501069060541	102.86	0.46414	102.85	102.64	103.1	-0.0046005					27	11	3	0	0	0	1.0592	1	13116	13116		8.6937	0	1	1662700			115	14333	71	72	179	179					0.07154461771006027
AARGVKPGN	9	Unmodified	_AARGVKPGN_					0	0	0			REV__ENST00000452802.5_1_3:8540357-8543323:-|nuORF	REV__ENST00000452802.5_1_3:8540357-8543323:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2512512207031	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	0.83071	1	9467	9467		37.159	1.9584	1	2292300	+		116	32739	72	73	180	180					0.04839453677379879
AARILPLLL	9	Unmodified	_AARILPLLL_					0	0	0			REV__ENST00000465070.5_1_2:145271084-145271330:-|nuORF	REV__ENST00000465070.5_1_2:145271084-145271330:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.3363952636719	2	490.33677	978.658987	-0.76518	-0.0003752	0.60352	0.00029593	-0.16166	-7.9269E-05	490.33693800440835	81.489	3.0366	81.513	81.167	84.203	0.023911					163	71	3	0	0	0	0.90698	1	10189	10189		31.955	0	1	6141800	+		117	32993	73	74	181	181					0.16880390996004735
AARIPMTVL	9	Unmodified	_AARIPMTVL_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2884826660156	2	486.288963	970.563372	1.0985	0.00053418	-1.7108	-0.00083194	-0.6123	-0.00029775	486.28809939816097	58.927	0.79364	58.74	58.5	59.294	-0.18705					67	21	5	0	0	0	0.35646	1	6648	6648		68.787	0.30212	1	24491000	+		118	26296	74	75	182	182					0.07691294813446348
AARIPMTVL	9	Unmodified	_AARIPMTVL_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	486.288963	970.563372	0.38919	0.00018926	-1.1207	-0.000545	-0.73154	-0.00035574	486.2884728224266	58.662	0.83891	58.662	58.418	59.257	0	-0.02368	-5.8628E-05	NaN	68.787	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23056000	+		119	26296	74	75							0.07691294813446348
AARIPMTVL	9	Unmodified	_AARIPMTVL_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	486.288963	970.563372	1.0985	0.00053418	-1.7108	-0.00083194	-0.6123	-0.00029775	486.28809939816097	58.927	0.79364	58.74	58.5	59.294	-0.18705	0.054878	-0.00063251	NaN	68.787	67	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24491000	+		120	26296	74	75							0.07691294813446348
AARIPMTVL	9	Unmodified	_AARIPMTVL_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	486.288963	970.563372	0.038466	1.8706E-05	-0.7859	-0.00038217	-0.74743	-0.00036347	486.28863398685365	58.563	0.83969	58.654	58.371	59.211	0.091217	-0.031198	0.00026701	NaN	68.787	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18825000	+		121	26296	74	75							0.07691294813446348
AARPALAQS	9	Unmodified	_AARPALAQS_					0	0	0		nc|ENSG00000226950|P0C864|DANCR	nc|ENSG00000226950|P0C864|DANCR	nc|ENSG00000226950|P0C864|DANCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.78802490234375	2	442.751059	883.487565	0.12082	5.3492E-05	2.1761	0.00096349	2.297	0.001017	442.75083368995513	41.624	0.72911	41.647	41.324	42.053	0.023006					50	20	4	0	0	0	0.024427	1	3656	3656		42.396	15.703	1	414970			122	18738	75	76	183	183					0.04116033957518539
AARPATSTL	9	Unmodified	_AARPATSTL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.25103759765625	2	444.250892	886.48723	-0.33659	-0.00014953	1.7272	0.00076732	1.3906	0.00061779	444.2521868694058	29.178	2.577	29.181	28.713	31.29	0.0031357					169	62	5	0	0	0	0.033448	5	1723	1723;1735;1759;1771;1783		138.83	14.231	1	169840000			123	3392	76	77	184;185;186;187;188	184					0.03944614237661881
AARPATSTL	9	Unmodified	_AARPATSTL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.2518310546875	2	444.250892	886.48723	-0.012372	-5.4961E-06	1.3035	0.00057909	1.2911	0.00057359	444.25196265010027	28.882	2.6407	28.963	28.411	31.051	0.080811					155	64	4	0	0	0	0.091713	3	1690	1654;1666;1690		113.41	19.405	1	155110000			124	3392	76	77	189;190;191	191					0.03944614237661881
AARQRLLV	8	Unmodified	_AARQRLLV_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2;nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254221|ENST00000523390|PCDHGB1;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000254221|ENST00000523390|PCDHGB1;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.8001403808594	2	463.798343	925.582134	-0.49726	-0.00023063	3.8006	0.0017627	3.3034	0.0015321	463.7999310295488	103.06	1.0484	103.06	102.77	103.82	0					55	25	3	0	0	0	1.0338	1	13234	13234		31.955	2.8053	1	813880			125	10871;10876;11050	77	78	192	192					0.1163659249950797
AARRRGGL	8	Unmodified	_AARRRGGL_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.78485107421875	2	428.764835	855.515117	0.089987	3.8583E-05	-3.6244	-0.001554	-3.5344	-0.0015154	428.7635151478818	25.921	0.21618	25.75	25.621	25.837	-0.17078					9	5	3	0	0	0	0.027866	1	1257	1257		42.474	0	1	321290	+		126	28740	78	79	193	193					0.08157982008424369
AARRRLAA	8	Unmodified	_AARRRLAA_					0	0	0		ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	ENSG00000179774|ENST00000373673|ATOH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7875671386719	2	442.780485	883.546417	-0.12252	-5.4249E-05	-4.0695	-0.0018019	-4.1921	-0.0018562	442.7787670707821	40.928	0.14118	40.951	40.864	41.005	0.023006					5	3	2	0	0	0	0.027866	1	3581	3581		20.482	0	1	27697			127	8921	79	80	194	194					0.09998555042500357
AARRRLLL	8	Unmodified	_AARRRLLL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5;REV__ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7975769042969	2	484.827435	967.640317	0.55718	0.00027014	-3.7243	-0.0018056	-3.1671	-0.0015355	484.8253850063508	58.816	0.46463	58.816	58.643	59.108	0					24	12	3	0	0	0	0.027866	1	6715	6715		37.028	1.8278	1	227870			128	5175;23063	80	81	195	195					0.1552027414479653
AARSDPSSL	9	Unmodified	_AARSDPSSL_					0	0	0			REV__ENST00000488216.5_1_X:48434299-48434428:+|nuORF	REV__ENST00000488216.5_1_X:48434299-48434428:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2301330566406	2	452.230156	902.445759	0.14346	6.4879E-05	-0.56213	-0.00025421	-0.41866	-0.00018933	452.2299426936562	26.846	1.153	26.846	26.573	27.726	0					47	29	2	0	0	0	0.15029	1	1415	1415		99.375	6.1795	1	6191600	+		129	33635	81	82	196	196					-0.009365665216591879
AASGEAPVRRG	11	Unmodified	_AASGEAPVRRG_					0	0	0			REV__ENST00000376004.4_1_13:103450841-103451195:-|nuORF	REV__ENST00000376004.4_1_13:103450841-103451195:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.33154296875	2	535.788704	1069.56285	-0.20656	-0.00011067	-1.3443	-0.00072028	-1.5509	-0.00083095	535.7858079860521	46.584	0.35046	46.487	46.368	46.719	-0.096649					14	9	2	0	0	0	0.024741	1	4522	4522		45.972	4.5456	1	337360	+		130	31347	82	83	197	197					0.03085591417948308
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.803955078125	2	552.80402	1103.59349	-0.82943	-0.00045851	0.401	0.00022168	-0.42843	-0.00023684	552.8042805746485	25.505	0.99236	25.505	25.211	26.203	0					76	23	6	0	0	0	0.0084656	4	1212	1212;1224;1238;1256		141.91	46.096	1	7394400			131	7808	83	84	198;199;200;201	198					0.04583325012345085
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8037719726562	2	552.80402	1103.59349	-1.1078	-0.00061237	0.69076	0.00038185	-0.417	-0.00023052	552.8044316655643	25.568	0.99389	25.534	25.238	26.232	-0.034395					72	23	5	0	0	0	0.096502	4	1220	1196;1208;1220;1233		109.83	34.786	1	7381700			132	7808	83	84	202;203;204;205	204					0.04583325012345085
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8038940429688	2	552.80402	1103.59349	0.052896	2.9241E-05	-0.35702	-0.00019736	-0.30413	-0.00016812	552.8038658158258	25.398	0.91532	25.478	25.174	26.09	0.08009					73	21	6	0	0	0	0.027116	4	1157	1134;1145;1157;1171		128.35	48.897	1	7973200			133	7808	83	84	206;207;208;209	208					0.04583325012345085
AASQGRSPI	9	Unmodified	_AASQGRSPI_					0	0	0			REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.73968505859375	2	443.740691	885.466829	-0.67439	-0.00029926	0.69575	0.00030873	0.021359	9.4778E-06	443.7408823748965	25.546	0.70863	25.546	25.248	25.957	0					38	16	3	0	0	0	0.40693	1	1220	1220		65.465	5.3471	1	833440	+		134	29472	84	85	210	210					0.019514435778546613
AASQGRSPI	9	Unmodified	_AASQGRSPI_					0	0	0			REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.74005126953125	2	443.740691	885.466829	0.31702	0.00014068	-0.1722	-7.6411E-05	0.14482	6.4265E-05	443.7404992216125	25.398	0.79499	25.478	25.254	26.049	0.08009					39	18	3	0	0	0	0.42604	2	1147	1147;1160		64.207	5.4253	1	1083100	+		135	29472	84	85	211;212	211					0.019514435778546613
AASQGRSPI	9	Unmodified	_AASQGRSPI_					0	0	0			REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	443.740691	885.466829	-0.67439	-0.00029926	0.69575	0.00030873	0.021359	9.4778E-06	443.7408823748965	25.546	0.70863	25.546	25.248	25.957	0	0.026781	0.00032339	NaN	65.465	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	833440	+		136	29472	84	85							0.019514435778546613
AASQGRSPI	9	Unmodified	_AASQGRSPI_					0	0	0			REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	REV__ENST00000246139.9_1_X:71526667-71526790:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	443.740691	885.466829	0.31702	0.00014068	-0.1722	-7.6411E-05	0.14482	6.4265E-05	443.7404992216125	25.398	0.79499	25.478	25.254	26.049	0.08009	-0.041398	-0.0004469	NaN	65.465	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1083100	+		137	29472	84	85							0.019514435778546613
AASQPSGRLS	10	Unmodified	_AASQPSGRLS_					0	0	0			REV__ENSG00000054598|ENST00000645831|FOXC1	REV__ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2568359375	2	487.256705	972.498858	-0.82867	-0.00040378	0.77601	0.00037812	-0.05266	-2.5659E-05	487.2570330123487	25.505	1.3862	25.505	24.697	26.083	0					82	32	3	0	0	0	0.83673	1	1218	1218		58.23	2.7257	1	2225700	+		138	20190	85	86	213	213					0.011508112609931231
AASQPSGRLS	10	Unmodified	_AASQPSGRLS_					0	0	0			REV__ENSG00000054598|ENST00000645831|FOXC1	REV__ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2572021484375	2	487.256705	972.498858	-0.1925	-9.3798E-05	0.29515	0.00014382	0.10265	5.0018E-05	487.2567791785539	25.398	1.311	25.478	24.779	26.09	0.08009					54	30	3	0	0	0	0.72729	1	1163	1163		65.465	5.3471	1	2800100	+		139	20190	85	86	214	214					0.011508112609931231
AASQVSRAP	9	Unmodified	_AASQVSRAP_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.7394714355469	2	443.740691	885.466829	-0.52009	-0.00023079	0.36825	0.00016341	-0.15184	-6.7379E-05	443.7406530932933	25.568	1.3198	25.534	25.238	26.558	-0.034395					60	31	3	0	0	0	0.77768	1	1211	1211		40.778	2.9666	1	877910	+		140	20312	86	87	215	215					0.019514435778546613
AASVTTGPNR	10	Unmodified	_AASVTTGPNR_					0	0	0			REV__nc|ENSG00000078403|P55197-1|MLLT10;REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF	REV__nc|ENSG00000078403|P55197-1|MLLT10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2568664550781	2	487.256705	972.498858	-0.86103	-0.00041954	0.93105	0.00045366	0.070013	3.4114E-05	487.25708755173025	25.566	1.2602	25.532	24.727	25.987	-0.034395					73	29	4	0	0	0	0.59716	1	1203	1203		77.318	3.0625	1	2102100	+		141	20611;33100	87	88	216	216					0.011508112609931231
AASVTTGPNR	10	Unmodified	_AASVTTGPNR_					0	0	0			REV__nc|ENSG00000078403|P55197-1|MLLT10;REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF	REV__nc|ENSG00000078403|P55197-1|MLLT10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.25689697265625	2	487.256705	972.498858	-0.1925	-9.3798E-05	0.29515	0.00014382	0.10265	5.0018E-05	487.2567791785539	25.398	1.311	25.478	24.779	26.09	0.08009					54	30	3	0	0	0	0.59716	2	1138	1138;1150		77.318	11.852	1	2800100	+		142	20611;33100	87	88	217;218	217					0.011508112609931231
AATDSETRLL	10	Unmodified	_AATDSETRLL_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2805786132812	2	538.782753	1075.55095	-0.72099	-0.00038846	3.218	0.0017338	2.497	0.0013453	538.7841023751195	103.99	0.37812	103.86	103.7	104.08	-0.12927					18	9	3	0	0	0	1.118	1	12960	12960		30.318	1.1682	1	64355	+		143	23437	88	89	219	219					0.01619929884100202
AATILTKSTL	10	Unmodified	_AATILTKSTL_					0	0	0		ENSG00000121152|ENST00000240423|NCAPH;chr2:96335848-96341675|498|13.47|0.71|4.24|+|ENST00000435975|NCAPH,NCAPH;nc|ENSG00000121152|Q15003-2|NCAPH	ENSG00000121152|ENST00000240423|NCAPH	ENSG00000121152|ENST00000240423|NCAPH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7551574707031	2	509.810782	1017.60701	-0.37514	-0.00019125	1.2775	0.00065128	0.90235	0.00046003	509.81115570352273	37.494	0.55726	37.527	37.264	37.822	0.032269					22	14	2	0	0	0	0.03519	1	3020	3020		25.574	7.2496	1	113360			144	383	89	90	220	220					0.09891182791579922
AATLAAYPAE	10	Unmodified	_AATLAAYPAE_					0	0	0		ENSG00000159184|ENST00000290295|HOXB13	ENSG00000159184|ENST00000290295|HOXB13	ENSG00000159184|ENST00000290295|HOXB13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2926025390625	2	489.250557	976.486562	-0.66274	-0.00032425	-1.2964	-0.00063428	-1.9592	-0.00095853	489.25127603446816	60.779	0.63748	60.566	60.118	60.756	-0.21339					31	16	3	0	0	0	0.03519	1	6974	6974		34.173	0	1	287000			145	6726	90	91	221	221					-0.0026222520206147237
AATLLHLELT	10	Unmodified	_AATLLHLELT_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8314819335938	2	541.316232	1080.61791	-0.6855	-0.00037107	3.3307	0.001803	2.6452	0.0014319	541.3175002924432	75.155	0.35505	74.911	74.798	75.153	-0.24455					14	8	2	0	0	0	0.03519	1	9210	9210		32.812	1.2826	1	125170			146	6852	91	92	222	222					0.08082585165834644
AATLLHLELT	10	Unmodified	_AATLLHLELT_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	541.316232	1080.61791	-0.57934	-0.00031361	2.4575	0.0013303	1.8781	0.0010167	541.3171460077172	74.893	0.28067	74.893	74.835	75.116	0	-0.015867	-0.001792	NaN	45.972	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142410			147	6852	91	92							0.08082585165834644
AATLLHLELT	10	Unmodified	_AATLLHLELT_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	541.316232	1080.61791	-0.87921	-0.00047593	7.8261	0.0042364	6.9469	0.0037605	541.3205600257996	74.912	0.48094	74.923	74.69	75.171	0.010376	0.013872	0.0040203	NaN	45.972	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191270			148	6852	91	92							0.08082585165834644
AATLVMKLQL	10	Unmodified	_AATLVMKLQL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3167114257812	2	544.330827	1086.6471	-0.90012	-0.00048996	-3.0979	-0.0016863	-3.998	-0.0021762	544.3288679632735	90.997	0.33246	90.985	90.702	91.034	-0.012383					13	7	3	0	0	0	0.03519	1	11461	11461		35.152	0	1	92571			149	7823	92	93	223	223					0.10724406190502123
AATRLSSLL	9	Unmodified	_AATRLSSLL_					0	0	0			REV__ENST00000375533.5_1_10:28966447-28966537:+|nuORF	REV__ENST00000375533.5_1_10:28966447-28966537:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7527770996094	2	466.282192	930.549831	-0.41285	-0.00019251	-2.5313	-0.0011803	-2.9441	-0.0013728	466.28092401026004	29.445	0.95074	29.449	29.166	30.117	0.0031357					63	23	6	0	0	0	0.023417	1	1838	1838		58.782	0	1	8392700	+		150	31327	93	94	224	224					0.08177760305852644
AAVDEPDL	8	Unmodified	_AAVDEPDL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2298278808594	2	415.200533	828.386513	-0.056327	-2.3387E-05	2.6906	0.0011171	2.6342	0.0010937	415.20145934443633	27.063	0.45479	27.05	26.786	27.241	-0.012983					15	11	2	0	0	0	0.027866	1	1433	1433		35.201	22.242	1	58537	+		151	23795	94	95	225	225					-0.0345446253584214
AAVIKYEEKP	10	Unmodified	_AAVIKYEEKP_					0	0	0		MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000518975.1_1_8:17566427-17579410:-|nuORF;nc|ENSG00000129422|Q9ULD2-6|MTUS1	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.751220703125	2	574.321514	1146.62847	-0.35957	-0.00020651	3.3569	0.0019279	2.9973	0.0017214	574.3230321410844	30.716	0.337	30.472	30.245	30.582	-0.24415					12	7	2	0	0	0	0.03519	1	1966	1966		79.713	40.46	1	64955			152	4346	95	96	226	226					0.06102567820266813
AAVIKYEEKP	10	Unmodified	_AAVIKYEEKP_					0	0	0		MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000518975.1_1_8:17566427-17579410:-|nuORF;nc|ENSG00000129422|Q9ULD2-6|MTUS1	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7515869140625	2	574.321514	1146.62847	-0.79074	-0.00045414	3.2862	0.0018873	2.4955	0.0014332	574.3234277980907	30.579	0.25342	30.4	30.243	30.497	-0.17818					9	5	2	0	0	0	0.03519	1	1953	1953		75.043	7.5496	1	59093			153	4346	95	96	227	227					0.06102567820266813
AAVIKYEEKP	10	Unmodified	_AAVIKYEEKP_					0	0	0		MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000518975.1_1_8:17566427-17579410:-|nuORF;nc|ENSG00000129422|Q9ULD2-6|MTUS1	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.7510986328125	2	574.321514	1146.62847	-0.25717	-0.0001477	2.8045	0.0016107	2.5473	0.001463	574.824353531917	30.6	0.29813	30.45	30.344	30.642	-0.14952					11	6	2	0	0	0	0.03519	1	1931	1931		51.193	3.5354	1	76950			154	4346	95	96	228	228					0.06102567820266813
AAVRKATQ	8	Unmodified	_AAVRKATQ_					0	0	0		ENST00000509849.5_1_5:37107706-37125531:-|nuORF;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1	ENST00000509849.5_1_5:37107706-37125531:-|nuORF	ENST00000509849.5_1_5:37107706-37125531:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5549011230469	2	422.753601	843.49265	0.040124	1.6963E-05	-1.0755	-0.00045466	-1.0353	-0.00043769	422.75309237112924	24.391	0.55229	24.176	23.954	24.506	-0.2151					17	12	2	0	0	0	0.027866	1	1042	1042		3.41	0	1	86612			155	10023	96	97	229	229					0.06464337820136734
AAVTPENIIR	10	Unmodified	_AAVTPENIIR_					0	0	0			REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.3170776367188	2	542.31148	1082.60841	-0.20697	-0.00011224	2.3295	0.0012633	2.1225	0.0011511	542.3132084600306	70.996	0.94566	70.724	70.451	71.397	-0.27185					44	22	3	0	0	0	1.1307	1	8261	8261		26.693	1.1189	1	5309700	+		156	32150	97	98	230	230					0.07040816880316925
AAWRRKRLKGL	11	Unmodified	_AAWRRKRLKGL_					0	0	0		ENST00000367577.6_2_1:181059300-181059528:+|nuORF	ENST00000367577.6_2_1:181059300-181059528:+|nuORF	ENST00000367577.6_2_1:181059300-181059528:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.24786376953125	3	452.289595	1353.84696	0.65038	0.00029416	-0.94148	-0.00042582	-0.2911	-0.00013166	452.2898268704112	33.135	0.4278	33.191	32.995	33.423	0.056568					19	11	4	0	0	0	0.024821	1	2344	2344		19.263	13.262	1	162600			157	12864	98	99	231	231					0.18418641973107697
AAYGRRRLF	9	Unmodified	_AAYGRRRLF_					0	0	0			REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.77734375	2	555.319974	1108.6254	0.092386	5.1304E-05	1.6557	0.00091943	1.7481	0.00097073	555.3210627831061	76.567	0.55073	76.315	76.063	76.614	-0.25162					37	12	4	0	0	0	0.024466	1	9122	9122		33.516	0	1	284950	+		158	33447	99	100	232	232					0.07542782276777871
AAYGRRRLF	9	Unmodified	_AAYGRRRLF_					0	0	0			REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.319974	1108.6254	0.060895	3.3816E-05	1.863	0.0010346	1.9239	0.0010684	555.3205508473811	76.438	0.49056	76.438	76.228	76.719	0	0.051964	6.2741E-05	NaN	25.45	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332550	+		159	33447	99	100							0.07542782276777871
AAYGRRRLF	9	Unmodified	_AAYGRRRLF_					0	0	0			REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.319974	1108.6254	-0.67595	-0.00037537	2.4764	0.0013752	1.8004	0.00099983	555.321105310796	76.693	0.65129	76.464	76.121	76.772	-0.22843	0.078269	0.00074402	NaN	25.45	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325950	+		160	33447	99	100							0.07542782276777871
AAYGRRRLF	9	Unmodified	_AAYGRRRLF_					0	0	0			REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.319974	1108.6254	0.33781	0.00018759	1.3993	0.00077704	1.7371	0.00096463	555.3205388458043	76.485	0.49046	76.496	76.285	76.775	0.011635	0.11059	-0.00045229	NaN	25.45	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316040	+		161	33447	99	100							0.07542782276777871
AAYSLLLFLL	10	Unmodified	_AAYSLLLFLL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.3107299804688	2	562.341718	1122.66888	0.015139	8.513E-06	2.6664	0.0014994	2.6815	0.0015079	562.3429915078264	87.189	1.6895	87.154	86.52	88.209	-0.035355					73	40	3	0	0	0	0.03519	1	11005	11005		82.305	18.098	1	172500			162	10789;15485	100	101	233	233					0.11245534210706865
AAYSLLLFLL	10	Unmodified	_AAYSLLLFLL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.3113403320312	2	562.341718	1122.66888	0.26308	0.00014794	2.5061	0.0014093	2.7692	0.0015572	562.3428336927838	87.088	1.9102	87.11	86.417	88.327	0.021263					75	45	3	0	0	0	0.03519	1	11003	11003		82.305	27.529	1	146630			163	10789;15485	100	101	234	234					0.11245534210706865
AAYSLLLFLL	10	Unmodified	_AAYSLLLFLL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.3114013671875	2	562.341718	1122.66888	0.53187	0.00029909	1.753	0.00098581	2.2849	0.0012849	562.3425360792554	87.333	1.0148	87.197	86.544	87.559	-0.13614					52	23	3	0	0	0	0.03519	1	10644	10644		73.975	13.003	1	164130			164	10789;15485	100	101	235	235					0.11245534210706865
AAYSLLLFLL	10	Unmodified	_AAYSLLLFLL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA;ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3125	2	562.341718	1122.66888	-0.14648	-8.2374E-05	2.5859	0.0014542	2.4394	0.0013718	562.3429286264999	87.275	0.88452	87.137	86.618	87.502	-0.13734					49	20	3	0	0	0	0.03519	1	10617	10617		71.296	7.0884	1	174270			165	10789;15485	100	101	236	236					0.11245534210706865
ACAKPSVLL	9	Unmodified	_ACAKPSVLL_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.26666259765625	2	451.262413	900.510274	0.033483	1.511E-05	3.9868	0.0017991	4.0203	0.0018142	451.26412952419776	33.082	0.85314	32.85	32.544	33.397	-0.23107					63	20	5	0	0	0	0.4752	1	2315	2315		60.972	0.67798	1	4935500			166	2042	101	102	237	237					0.05603917030782668
ACALQADL	8	Unmodified	_ACALQADL_					0	0	0		nc|ENSG00000153303|Q8N878-2|FRMD1;ENSG00000153303|ENST00000283309|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.1878662109375	2	402.699646	803.384739	1.4296	0.0005757	-0.71261	-0.00028697	0.71699	0.00028873	402.6974428993574	36.469	0.44352	36.271	36.093	36.536	-0.19829					17	10	2	0	0	0	0.027866	1	2850	2850		3.9852	0	1	70042			167	6341	102	103	238	238					-0.02481794825473571
ACATLASSLL	10	Unmodified	_ACATLASSLL_					0	0	0			REV__ENST00000557852.2_3_15:86233148-86233286:+|nuORF	REV__ENST00000557852.2_3_15:86233148-86233286:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.24078369140625	2	475.254785	948.495018	-0.1325	-6.2973E-05	-3.5643	-0.0016939	-3.6968	-0.0017569	475.2545508762404	37.593	0.90527	37.625	37.226	38.132	0.032269					50	24	4	0	0	0	0.03519	1	2972	2972		24.203	15.971	1	522610	+		168	35082	103	104	239	239					0.018710054429334377
ACEKLIQV	8	Unmodified	_ACEKLIQV_					0	0	0		ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2521667480469	2	452.252046	902.489538	-0.0051809	-2.3431E-06	-0.09205	-4.163E-05	-0.09723	-4.3973E-05	452.25200102854944	74.941	0.86217	74.951	74.607	75.47	0.010376					38	21	2	0	0	0	0.15677	1	9087	9087		147.69	4.5865	1	5823500			169	10729	104	105	240	240					0.034393266511074216
ACEKLIQV	8	Unmodified	_ACEKLIQV_					0	0	0		ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.2521057128906	2	452.252046	902.489538	0.36222	0.00016382	-0.39257	-0.00017754	-0.03035	-1.3726E-05	452.2517169381468	75.147	0.98578	74.871	74.396	75.381	-0.27573					46	23	3	0	0	0	0.27053	1	8890	8890		124.59	9.1353	1	1714600			170	10729	104	105	241	241					0.034393266511074216
ACILLLPH	8	Unmodified	_ACILLLPH_					0	0	0		ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.26165771484375	2	440.259674	878.504795	2.2659	0.0009976	2.3502	0.0010347	4.6161	0.0020323	440.2606120683346	19.74	1.2191	19.806	19.488	20.707	0.066195					64	24	4	0	0	0	1.0241	1	450	450		33.493	4.3434	1	1083900			171	2242	105	106	242	242					0.060682382389586564
ACRDGPQV	8	Unmodified	_ACRDGPQV_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.25830078125	2	423.200344	844.386136	-0.026887	-1.1379E-05	-3.2287	-0.0013664	-3.2556	-0.0013778	423.19884216493506	27.236	0.50574	27.079	26.802	27.307	-0.15664					22	11	3	0	0	0	0.027866	1	1486	1486		57.811	0	1	120410	+		172	24738	106	107	243	243					-0.042281607366930984
ACVFRNLFAN	10	Unmodified	_ACVFRNLFAN_					0	0	0			REV__nc|ENSG00000013016|Q9NZN3-2|EHD3	REV__nc|ENSG00000013016|Q9NZN3-2|EHD3	MSMS	OPSCC_40_ClassI_Rep-1	4	577.7955932617188	2	577.792401	1153.57025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.358	1	99.223	98.723	99.723	-0.13526								0	0	0	0.75225	1	12309	12309		44.117	11.304	1		+		173	19951	107	108	244	244					-0.0003939230598462018
ADAPSFLKP	9	Unmodified	_ADAPSFLKP_					0	0	0		ENST00000508564.1_1_12:54526184-54526286:+|nuORF	ENST00000508564.1_1_12:54526184-54526286:+|nuORF	ENST00000508564.1_1_12:54526184-54526286:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2711181640625	2	473.255643	944.496732	-0.12947	-6.1274E-05	0.41343	0.00019566	0.28396	0.00013439	473.25497533571155	48.305	0.40677	48.152	47.957	48.363	-0.15301					20	11	3	0	0	0	0.024457	1	4880	4880		21.96	0	1	181900			174	15783	108	109	245	245					0.022263825231902956
ADCCAKQEP	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))ADC(Carbamidomethyl (C))CAKQEP_	ADC(0.5)C(0.5)AKQEP		ADC(0)C(0)AKQEP		1	1	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;ALB|p.E121Q|1|0.14|ENSG00000163631|chr4:73408684-73408684|G/C|missense_variant	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7879638671875	2	532.212792	1062.41103	-0.77963	-0.00041493	-1.1323	-0.00060265	-1.912	-0.0010176	532.2120019233303	45.54	0.46835	45.337	45.129	45.598	-0.20302					27	13	3	0	0	0	0.023417	1	4359	4359		58.782	9.3404	2	391330		+	175	507	109	110	246	246	5;6				-0.11767893716296385
ADCRVGPDL	9	Unmodified	_ADCRVGPDL_					0	0	0		ENSG00000198920|ENST00000361413|KIAA0753;KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	ENSG00000198920|ENST00000361413|KIAA0753	ENSG00000198920|ENST00000361413|KIAA0753	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2791748046875	2	473.226559	944.438566	-0.49987	-0.00023655	-2.4444	-0.0011567	-2.9442	-0.0013933	473.22529316941115	31.331	0.52765	31.178	31.006	31.534	-0.15231					18	13	2	0	0	0	0.024477	1	2050	2050		27.882	0	1	177590			176	10252	110	111	247	247					-0.0358762239374073
ADDGEKWNWSP	11	Unmodified	_ADDGEKWNWSP_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.8913879394531	3	435.52292	1303.54693	-0.35382	-0.0001541	1.6142	0.00070301	1.2604	0.00054892	435.52348539936395	65.37	0.57241	65.131	64.845	65.418	-0.2383					22	13	2	0	0	0	0.02476	1	7454	7454		45.908	13.096	1	145850	+		177	25052	111	112	248	248					-0.09270159609627626
ADDGEKWNWSP	11	Unmodified	_ADDGEKWNWSP_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.8910217285156	3	435.52292	1303.54693	-1.2751	-0.00055535	1.7148	0.00074684	0.43966	0.00019148	435.52365216289536	65.26	0.53165	65.057	64.859	65.39	-0.20254					23	12	3	0	0	0	0.024818	1	7433	7433		60.167	44.246	1	124520	+		178	25052	111	112	249	249					-0.09270159609627626
ADDGEKWNWSP	11	Unmodified	_ADDGEKWNWSP_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.8912658691406	3	435.52292	1303.54693	-0.079264	-3.4521E-05	1.0096	0.0004397	0.93032	0.00040517	435.5232515935228	65.354	0.57234	65.103	64.864	65.437	-0.25112					20	13	3	0	0	0	0.024734	1	7417	7417		34.087	0.16487	1	196230	+		179	25052	111	112	250	250					-0.09270159609627626
ADDINGVSLA	10	Unmodified	_ADDINGVSLA_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7449645996094	2	487.743096	973.47164	0.4038	0.00019695	4.469	0.0021797	4.8728	0.0023767	487.7451537039388	16.873	0.44964	16.726	16.594	17.043	-0.14753					23	15	2	0	0	0	1.1197	1	98	98		20.947	0	1	79635	+		180	36907	112	113	251	251					-0.016157170700239476
ADDQYKPVK	9	Unmodified	_ADDQYKPVK_					0	0	0			REV__ENSG00000019485|ENST00000683152|PRDM11;REV__nc|ENSG00000019485|Q9NQV5|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2754516601562	2	532.274564	1062.53457	-1.739	-0.00092565	3.2764	0.0017439	1.5373	0.00081827	532.7811326747438	49.251	0.81569	49.325	48.877	49.693	0.074196					31	18	2	0	0	0	0.024381	1	5064	5064		29.15	13.508	1	1452400	+		181	19987;36439	113	114	252	252					0.0058084871798200766
ADEADRAR	8	Unmodified	_ADEADRAR_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2301025390625	2	452.21758	902.420607	-0.38391	-0.00017361	0.17616	7.9662E-05	-0.20775	-9.3947E-05	452.2175640131024	26.569	0.21531	26.65	26.499	26.714	0.081293					6	4	2	0	0	0	0.027866	1	1297	1297		12.959	0	1	30342			182	8733	114	115	253	253					-0.03450621324236636
ADEELRRTL	9	Unmodified	_ADEELRRTL_					0	0	0			REV__ENST00000375050.5_1_6:32154027-32154156:-|nuORF	REV__ENST00000375050.5_1_6:32154027-32154156:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3231811523438	2	551.796195	1101.57784	0.21376	0.00011795	-4.4526	-0.0024569	-4.2388	-0.002339	551.7928581618137	50.323	0.82216	50.142	49.901	50.723	-0.18071					41	21	4	0	0	0	0.024397	1	5105	5105		47.657	17.154	1	628580	+		183	31317	115	116	254	254					0.031110384952853565
ADEKWKAV	8	Unmodified	_ADEKWKAV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2698059082031	2	473.753267	945.491981	0.56817	0.00026917	-4.1358	-0.0019593	-3.5676	-0.0016902	473.75092052908104	25.44	0.63153	25.521	25.377	26.008	0.08009					22	14	3	0	0	0	0.027866	1	1153	1153		60.294	3.5729	1	126360			184	732	116	117	255	255					0.01705498380431436
ADEKWKAV	8	Unmodified	_ADEKWKAV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.753267	945.491981	0.10796	5.1148E-05	-4.1312	-0.0019571	-4.0232	-0.001906	473.751225571649	25.673	0.63893	25.673	25.445	26.083	0	0.01468	-2.2876E-05	NaN	60.294	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122820			185	732	116	117							0.01705498380431436
ADEKWKAV	8	Unmodified	_ADEKWKAV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.753267	945.491981	-0.13444	-6.3691E-05	-4.0837	-0.0019347	-4.2181	-0.0019983	473.75118271171004	25.808	0.7591	25.781	25.32	26.08	-0.026676	0.12296	2.2104E-05	NaN	60.294	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145870			186	732	116	117							0.01705498380431436
ADELPWLF	8	Unmodified	_ADELPWLF_					0	0	0		ENST00000474871.5_1_3:132405102-132413706:-|nuORF;nc|ENSG00000113971|Q7Z494-2|NPHP3;ENST00000471702.2_2_3:132363653-132416205:-|nuORF;ENSG00000113971|ENST00000337331|NPHP3	ENST00000474871.5_1_3:132405102-132413706:-|nuORF	ENST00000474871.5_1_3:132405102-132413706:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.3232421875	2	495.750193	989.485833	0.042775	2.1206E-05	-0.60385	-0.00029936	-0.56108	-0.00027815	495.74990733122553	64.508	0.82758	64.553	64.298	65.126	0.045502					32	21	3	0	0	0	0.027866	1	7502	7502		26.796	11.154	1	1006400			187	3338	117	118	256	256					-0.009330198510838272
ADESKFVEV	9	Unmodified	_ADESKFVEV_					0	0	0			REV__GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	REV__GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2536010742188	2	512.253297	1022.49204	-0.65531	-0.00033569	-0.095915	-4.9133E-05	-0.75123	-0.00038482	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.6238	1	5734	5734		51.193	1.7511	1	53582000	+		188	22681	118	119	257	257					-0.018305464102240876
ADEVRFFW	8	Unmodified	_ADEVRFFW_					0	0	0			REV__ENSG00000186198|ENST00000334287|SLC51B	REV__ENSG00000186198|ENST00000334287|SLC51B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2892456054688	2	535.258717	1068.50288	4.3333	0.0023194	-0.566	-0.00030296	3.7673	0.0020165	535.7604204219926	17.327	0.20495	17.077	16.974	17.179	-0.25049					5	3	2	0	0	0	0.027866	1	134	134		20.482	1.1219	1	13201	+		189	27836	119	120	258	258					-0.02863099245291778
ADFIRESSE	9	Unmodified	_ADFIRESSE_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.2716674804688	2	527.246003	1052.47745	-0.01494	-7.8769E-06	-0.26602	-0.00014026	-0.28096	-0.00014813	527.2456851356494	47.263	0.4372	46.994	46.801	47.238	-0.26939					21	11	2	0	0	0	0.024405	1	4620	4620		27.882	0	1	435730			190	3636	120	121	259	259					-0.046686185583666884
ADFKVNLVF	9	Unmodified	_ADFKVNLVF_					0	0	0			REV__GRM2|p.Y528*|1|0.28|ENSG00000164082|chr3:51715355-51715356|TA/-|frameshift_variant	REV__GRM2|p.Y528*|1|0.28|ENSG00000164082|chr3:51715355-51715356|TA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.7904052734375	2	526.792392	1051.57023	-0.42437	-0.00022355	-3.7661	-0.0019839	-4.1904	-0.0022075	526.7903105536759	41.295	0.74488	41.067	40.729	41.474	-0.2278					64	18	5	0	0	0	0.25032	1	3612	3612		82.305	2.3658	1	4600400	+		191	25689	121	122	260	260					0.046509309656585174
ADFVQFDQF	9	Unmodified	_ADFVQFDQF_					0	0	0			REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF	REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2718505859375	2	558.753464	1115.49238	-0.22088	-0.00012342	-3.4313	-0.0019173	-3.6522	-0.0020407	558.7512954085245	40.834	0.60067	40.606	40.366	40.966	-0.2278					32	15	3	0	0	0	0.024539	1	3611	3611		14.865	6.6336	1	443100	+		192	32648	122	123	261	261					-0.0607512669037078
ADFVQFDQF	9	Unmodified	_ADFVQFDQF_					0	0	0			REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF	REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.753464	1115.49238	-0.62318	-0.0003482	-2.9912	-0.0016713	-3.6144	-0.0020195	558.7514618787017	40.666	0.48278	40.526	40.303	40.786	-0.14018	-0.076981	7.4282E-05	NaN	9.7057	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521270	+		193	32648	122	123							-0.0607512669037078
ADFVQFDQF	9	Unmodified	_ADFVQFDQF_					0	0	0			REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF	REV__ENST00000447473.6_1_1:158978797-158978974:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.753464	1115.49238	-1.3574	-0.00075845	-2.2731	-0.0012701	-3.6305	-0.0020286	558.7517658345704	40.906	0.47923	40.676	40.485	40.964	-0.2303	0.073309	0.00087675	NaN	9.7057	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477050	+		194	32648	122	123							-0.0607512669037078
ADGFFLKY	8	Unmodified	_ADGFFLKY_					0	0	0			REV__ENST00000218789.9_3_13:111957024-111957249:+|nuORF	REV__ENST00000218789.9_3_13:111957024-111957249:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2671813964844	2	480.744911	959.475269	0.65641	0.00031557	2.7508	0.0013224	3.4072	0.001638	480.7461017600498	23.566	0.54917	23.364	23.153	23.702	-0.20193					20	12	2	0	0	0	0.027866	1	992	992		33.516	16.151	1	120740	+		195	29331	123	124	262	262					-0.00609002505530043
ADGFFLKY	8	Unmodified	_ADGFFLKY_					0	0	0			REV__ENST00000218789.9_3_13:111957024-111957249:+|nuORF	REV__ENST00000218789.9_3_13:111957024-111957249:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.744911	959.475269	-0.38167	-0.00018349	3.8217	0.0018373	3.44	0.0016538	480.74669577548656	23.537	0.71688	23.357	23.021	23.738	-0.17989	0.0072986	0.0014872	NaN	24.203	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185240	+		196	29331	123	124							-0.00609002505530043
ADGFFLKY	8	Unmodified	_ADGFFLKY_					0	0	0			REV__ENST00000218789.9_3_13:111957024-111957249:+|nuORF	REV__ENST00000218789.9_3_13:111957024-111957249:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.744911	959.475269	2.0066	0.00096467	1.2047	0.00057917	3.2113	0.0015438	480.7454139145357	23.519	0.58213	23.328	23.034	23.616	-0.19117	-0.021633	-0.001029	NaN	24.203	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224380	+		197	29331	123	124							-0.00609002505530043
ADGFKVKIDQT	11	Unmodified	_ADGFKVKIDQT_					0	0	0		APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	APOA4|p.E207G|1|0.42|ENSG00000110244|chr11:116821438-116821438|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.2445068359375	3	407.88731	1220.6401	-0.4022	-0.00016405	2.7268	0.0011122	2.3246	0.00094818	408.22299385707095	35.582	0.38736	35.395	35.1	35.488	-0.18675					12	9	2	0	0	0	0.024731	1	2689	2689		2.1239	0	1	92355			198	106	124	125	263	263					0.038607648436027375
ADGFRPPL	8	Unmodified	_ADGFRPPL_					0	0	0			REV__ENST00000394170.6_1_7:99102601-99103658:+|nuORF	REV__ENST00000394170.6_1_7:99102601-99103658:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.8910217285156	2	436.734877	871.455202	-0.65841	-0.00028755	-2.123	-0.0009272	-2.7814	-0.0012148	436.7339427368751	64.79	0.64236	64.588	64.38	65.023	-0.20254					25	15	2	0	0	0	0.027866	1	7433	7433		25.45	0	1	193150	+		199	31663	125	126	264	264					0.014332465545066952
ADGIDCRK	8	Unmodified	_ADGIDCRK_					0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.23602294921875	2	439.213452	876.412351	-0.26668	-0.00011713	-4.1988	-0.0018442	-4.4655	-0.0019613	439.2114399342807	25.437	0.54034	25.267	25.081	25.621	-0.17078					16	12	2	0	0	0	0.027866	1	1231	1231		45.952	25.005	1	74109	+		200	23473	126	127	265	265					-0.0307989156522126
ADGLGVRCC	9	Unmodified	_ADGLGVRCC_					0	0	0			REV__ENST00000421890.5_1_7:5862961-5870864:+|nuORF	REV__ENST00000421890.5_1_7:5862961-5870864:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.2583923339844	2	447.20203	892.389507	0.2391	0.00010693	0.14903	6.6649E-05	0.38813	0.00017357	447.20202865096996	42.833	0.39993	42.694	42.521	42.921	-0.13929					18	10	2	0	0	0	0.024539	1	3922	3922		14.865	6.6336	1	172010	+		201	32193	127	128	266	266					-0.060992339543417984
ADGLPLACP	9	Unmodified	_ADGLPLACP_					0	0	0			REV__nc|ENSG00000215906|A8MY62|LACTBL1	REV__nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2569580078125	2	428.715296	855.416039	0.26768	0.00011476	-3.6618	-0.0015699	-3.3941	-0.0014551	428.7135020011908	38.866	0.62691	38.64	38.282	38.909	-0.2257					30	16	3	0	0	0	0.024412	1	3235	3235		24.203	3.7209	1	412520	+		202	28816	128	129	267	267					-0.01745221791372842
ADGLRLQCHDL	11	Unmodified	_ADGLRLQCHDL_					0	0	0			REV__ENST00000344119.6_1_9:140330651-140331360:-|nuORF	REV__ENST00000344119.6_1_9:140330651-140331360:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2405090332031	3	414.208278	1239.60301	0.50697	0.00020999	-1.9219	-0.00079605	-1.4149	-0.00058606	414.2071599538342	34.229	0.39806	34.229	33.894	34.292	0					11	9	2	0	0	0	0.024723	1	2515	2515		12.433	0	1	43887	+		203	30677	129	130	268	268					-0.007212299737830108
ADGLVWALGAT	11	Unmodified	_ADGLVWALGAT_					0	0	0			REV__COQ5|p.R190T|1|0.23|ENSG00000110871|chr12:120516572-120516572|C/G|missense_variant	REV__COQ5|p.R190T|1|0.23|ENSG00000110871|chr12:120516572-120516572|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2670288085938	2	537.284931	1072.55531	-0.97374	-0.00052318	-0.28017	-0.00015053	-1.2539	-0.00067371	537.2853409237123	32.342	0.21317	32.185	31.991	32.204	-0.15772					7	4	2	0	0	0	0.024762	1	2181	2181		37.812	9.73	1	45760	+		204	19610	130	131	269	269					0.021934390976412033
ADGNLKVCLFG	11	Unmodified	_ADGNLKVCLFG_					0	0	0		ENST00000564020.1_1_16:48531360-48531648:+|nuORF;nc|ENSG00000124615|Q9NZB8-4|MOCS1;nc|ENSG00000124615|Q9NZB8-3|MOCS1;nc|ENSG00000124615|Q9NZB8-6|MOCS1;nc|ENSG00000124615|Q9NZB8-5|MOCS1;nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1;nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1	ENST00000564020.1_1_16:48531360-48531648:+|nuORF	ENST00000564020.1_1_16:48531360-48531648:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7491455078125	2	568.792066	1135.56958	0.14264	8.113E-05	4.0519	0.0023047	4.1946	0.0023858	569.2952042360138	70.068	0.65528	69.846	69.432	70.087	-0.22245					39	15	3	0	0	0	0.024768	1	8104	8104		47.657	9.8458	1	353040			205	4065	131	132	270	270					0.007217682542886905
ADGPHAAVLP	10	Unmodified	_ADGPHAAVLP_					0	0	0			REV__ENST00000469090.5_1_17:27942519-27943125:-|nuORF	REV__ENST00000469090.5_1_17:27942519-27943125:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.27911376953125	2	474.250892	946.48723	-0.084843	-4.0237E-05	3.5998	0.0017072	3.5149	0.001667	474.25249755316537	31.227	0.81125	30.986	30.41	31.221	-0.24109					23	19	2	0	0	0	0.03519	1	2072	2072		20.947	0	1	92178	+		206	33122	132	133	271	271					0.011846142376612079
ADGPYLVI	8	Unmodified	_ADGPYLVI_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5547180175781	2	424.231636	846.448719	2.2244	0.00094367	4.1342	0.0017539	6.3587	0.0026975	424.2327461034738	23.94	0.22194	23.76	23.626	23.848	-0.18089					6	4	2	0	0	0	0.027866	1	981	981		13.775	1.5685	1	21342			207	1601	133	134	272	272					0.01935308603140129
ADGRVVLVGG	10	Unmodified	_ADGRVVLVGG_					0	0	0		nc|ENSG00000143479|O43781-2|DYRK3;ENSG00000143479|ENST00000367109|DYRK3	nc|ENSG00000143479|O43781-2|DYRK3	nc|ENSG00000143479|O43781-2|DYRK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2560729980469	2	471.771991	941.529429	-0.35032	-0.00016527	-1.0047	-0.00047401	-1.3551	-0.00063928	471.7707020563775	44.526	0.41095	44.526	44.314	44.725	0					20	11	2	0	0	0	0.03519	1	4281	4281		16.717	0	1	175140			208	5652	134	135	273	273					0.056325896460634794
ADGTLFVGNL	10	Unmodified	_ADGTLFVGNL_					0	0	0		RBM7|p.R10G|1|0.19|ENSG00000076053|chr11:114400699-114400699|C/G|missense_variant	RBM7|p.R10G|1|0.19|ENSG00000076053|chr11:114400699-114400699|C/G|missense_variant	RBM7|p.R10G|1|0.19|ENSG00000076053|chr11:114400699-114400699|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.3085021972656	2	503.763832	1005.51311	-1.0098	-0.00050872	1.0693	0.00053868	0.059472	2.996E-05	504.2644988990231	65.434	0.17793	65.161	65.017	65.195	-0.27283					7	4	2	0	0	0	0.03519	1	7687	7687		14.137	0	1	63754			209	19037	135	136	274	274					0.010574636892783928
ADGVAVIPVL	10	Unmodified	_ADGVAVIPVL_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.28680419921875	2	477.286943	952.559333	0.35246	0.00016822	-0.076708	-3.6612E-05	0.27575	0.00013161	477.28673916222783	54.497	1.1796	54.346	53.886	55.065	-0.15036					78	33	3	0	0	0	0.82838	1	5927	5927		58.782	0.97068	1	4284300			210	7437	136	137	275	275					0.08115528591372367
ADGYRAATL	9	Unmodified	_ADGYRAATL_					0	0	0			REV__ENST00000587908.1_1_19:56832840-56833431:-|nuORF	REV__ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.77423095703125	2	469.240524	936.466495	-0.68014	-0.00031915	0.64398	0.00030218	-0.036166	-1.6971E-05	469.2403940327941	43.992	0.39006	43.847	43.604	43.994	-0.14471					32	10	4	0	0	0	0.024381	1	4143	4143		15.642	0	1	818580	+		211	35636	137	138	276	276					-0.004279761419979877
ADIEIGDITV	10	Unmodified	_ADIEIGDITV_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2706909179688	2	523.274229	1044.53391	-0.70782	-0.00037038	-0.66883	-0.00034998	-1.3766	-0.00072036	523.2733095728422	64.421	1.8464	64.158	63.181	65.027	-0.2626					143	49	5	0	0	0	0.85955	1	7586	7586		56.721	5.3856	1	1470500	+		212	19813	138	139	277	277					0.013420092782553183
ADIEIGDITV	10	Unmodified	_ADIEIGDITV_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.274229	1044.53391	0.041659	2.1799E-05	-1.5971	-0.0008357	-1.5554	-0.0008139	523.27295828316	64.199	1.6821	64.199	63.301	64.983	0	-0.025094	-0.00018629	NaN	56.721	147	45	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1544000	+		213	19813	138	139							0.013420092782553183
ADIEIGDITV	10	Unmodified	_ADIEIGDITV_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	523.274229	1044.53391	-0.70782	-0.00037038	-0.66883	-0.00034998	-1.3766	-0.00072036	523.2733095728422	64.421	1.8464	64.158	63.181	65.027	-0.2626	-0.066175	0.00078515	NaN	56.721	143	49	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1470500	+		214	19813	138	139							0.013420092782553183
ADIEIGDITV	10	Unmodified	_ADIEIGDITV_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.274229	1044.53391	0.72784	0.00038086	-2.4178	-0.0012652	-1.69	-0.00088431	523.2725095699586	64.143	1.6513	64.189	63.402	65.053	0.045502	-0.035716	-0.0010452	NaN	56.721	146	44	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1523800	+		215	19813	138	139							0.013420092782553183
ADIEIGDITV	10	Unmodified	_ADIEIGDITV_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.274229	1044.53391	-0.57154	-0.00029907	-0.95481	-0.00049963	-1.5263	-0.0007987	523.2734597738266	64.482	1.6999	64.247	63.433	65.133	-0.2345	0.022809	0.00048586	NaN	56.721	77	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514110	+		216	19813	138	139							0.013420092782553183
ADIEIGDITV	10	Unmodified	_ADIEIGDITV_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.274229	1044.53391	-0.10181	-5.3275E-05	-1.5286	-0.0007999	-1.6305	-0.00085317	523.2732260180466	64.472	1.6219	64.269	63.482	65.104	-0.20253	0.044964	-0.00011469	NaN	56.721	75	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435060	+		217	19813	138	139							0.013420092782553183
ADIEIGDITV	10	Unmodified	_ADIEIGDITV_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.274229	1044.53391	-0.3852	-0.00020156	-0.97541	-0.00051041	-1.3606	-0.00071197	523.2733308410383	64.539	1.1848	64.283	63.716	64.901	-0.25563	0.059212	0.0004643	NaN	56.721	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553810	+		218	19813	138	139							0.013420092782553183
ADIITVYY	8	Unmodified	_ADIITVYY_					0	0	0			REV__ENSG00000156508|ENST00000309268|EEF1A1	REV__ENSG00000156508|ENST00000309268|EEF1A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7895202636719	2	479.250026	956.485499	-0.43593	-0.00020892	-1.7799	-0.00085303	-2.2159	-0.0010619	479.2488539187227	33.745	0.54086	33.545	33.325	33.866	-0.20019					27	13	3	0	0	0	0.027866	1	2447	2447		20.482	7.5226	1	553960	+		219	25080	139	140	278	278					0.005515604290394549
ADISEIDLN	9	Unmodified	_ADISEIDLN_					0	0	0			REV__ENSG00000204574|ENST00000326195|ABCF1	REV__ENSG00000204574|ENST00000326195|ABCF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.76873779296875	2	495.242929	988.471305	0.11433	5.6622E-05	-1.5538	-0.0007695	-1.4394	-0.00071287	495.2419419610955	48.192	0.91427	48.005	47.279	48.193	-0.18684					31	24	2	0	0	0	0.024319	1	4645	4645		47.657	8.4045	1	301660	+		220	28619	140	141	279	279					-0.02339136789908025
ADISEIDLN	9	Unmodified	_ADISEIDLN_					0	0	0			REV__ENSG00000204574|ENST00000326195|ABCF1	REV__ENSG00000204574|ENST00000326195|ABCF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.242929	988.471305	-0.6987	-0.00034602	-0.13176	-6.5252E-05	-0.83046	-0.00041128	495.2429229947929	47.981	0.55563	47.883	47.63	48.186	-0.097549	-0.050572	-2.9006E-05	NaN	47.657	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204360	+		221	28619	140	141							-0.02339136789908025
ADISEIDLN	9	Unmodified	_ADISEIDLN_					0	0	0			REV__ENSG00000204574|ENST00000326195|ABCF1	REV__ENSG00000204574|ENST00000326195|ABCF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.242929	988.471305	-0.81455	-0.0004034	-0.32788	-0.00016238	-1.1424	-0.00056578	495.2424521397301	48.324	1.0209	48.048	47.63	48.65	-0.27598	0.1143	-0.00022326	NaN	47.657	36	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209020	+		222	28619	140	141							-0.02339136789908025
ADIVKDPVA	9	Unmodified	_ADIVKDPVA_					0	0	0		ENST00000460062.6_1_20:480238-524362:-|nuORF	ENST00000460062.6_1_20:480238-524362:-|nuORF	ENST00000460062.6_1_20:480238-524362:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.26092529296875	2	464.260925	926.507297	0.20188	9.3723E-05	0.035997	1.6712E-05	0.23787	0.00011044	464.2607577407201	59.961	1.1605	59.785	59.361	60.521	-0.1761					69	29	4	0	0	0	0.12602	2	6644	6644;6656		104.75	1.8346	1	3588100			223	14646	141	142	280;281	280					0.04110365177609765
ADKAKVTI	8	Unmodified	_ADKAKVTI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.25897216796875	2	423.258185	844.501818	-0.32584	-0.00013792	0.69447	0.00029394	0.36863	0.00015602	423.25842344230796	42.037	1.0356	41.905	41.603	42.638	-0.13219					83	29	5	0	0	0	0.83003	1	3838	3838		56.721	0	1	11798000			224	4246	142	143	282	282					0.07334686385820532
ADKFSAEFV	9	Unmodified	_ADKFSAEFV_					0	0	0		nc|ENSG00000108984|P52564-2|MAP2K6;ENSG00000108984|ENST00000590474|MAP2K6	nc|ENSG00000108984|P52564-2|MAP2K6	nc|ENSG00000108984|P52564-2|MAP2K6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.3082580566406	2	507.250557	1012.48656	0.13915	7.0586E-05	1.5813	0.00080213	1.7205	0.00087272	507.2515241312563	83.818	0.81497	83.679	83.465	84.28	-0.13861					20	18	2	0	0	0	0.02435	1	10160	10160		34.173	2.6427	1	40582			225	2954	143	144	283	283					-0.019182252020527812
ADKIASKAKM	10	Unmodified	_ADKIASKAKM_					0	0	0		ENSG00000253148|ENST00000417209|RGS21	ENSG00000253148|ENST00000417209|RGS21	ENSG00000253148|ENST00000417209|RGS21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8004760742188	2	531.802434	1061.59032	-0.48839	-0.00025973	-3.658	-0.0019453	-4.1464	-0.0022051	531.8005540640878	56.993	1.6699	56.829	55.986	57.656	-0.16431					120	45	5	0	0	0	0.82838	1	6387	6387		58.782	2.3482	1	25540000			226	10856	144	145	284	284					0.06198358633969292
ADKKVWSL	8	Unmodified	_ADKKVWSL_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.76947021484375	2	473.77146	945.528367	-0.1849	-8.7603E-05	-4.2887	-0.0020319	-4.4736	-0.0021195	473.76931038711996	29.99	1.2242	29.746	29.358	30.582	-0.24415					74	28	5	0	0	0	0.28835	1	1876	1876		116.9	12.89	1	4221600	+		227	26624	145	146	285	285					0.05342375277132305
ADKKVWSL	8	Unmodified	_ADKKVWSL_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.76922607421875	2	473.77146	945.528367	-0.71176	-0.00033721	-3.934	-0.0018638	-4.6457	-0.002201	473.7695081152244	29.851	0.88385	29.678	29.325	30.209	-0.17258					50	20	3	0	0	0	0.28835	1	1852	1852		116.9	2.009	1	4042000	+		228	26624	145	146	286	286					0.05342375277132305
ADKKVWSL	8	Unmodified	_ADKKVWSL_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7693176269531	2	473.77146	945.528367	-0.24115	-0.00011425	-4.3075	-0.0020408	-4.5487	-0.002155	473.76932686748216	29.875	1.0524	29.725	29.377	30.429	-0.14952					70	24	5	0	0	0	0.28835	2	1841	1841;1864		116.9	7.4253	1	3811000	+		229	26624	145	146	287;288	287					0.05342375277132305
ADKLRKNL	8	Unmodified	_ADKLRKNL_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2952575683594	2	479.295633	956.576714	-0.22061	-0.00010574	0.4053	0.00019426	0.18468	8.8519E-05	479.2956707913062	24.231	0.89883	24.056	23.612	24.511	-0.17484					50	20	4	0	0	0	0.50239	2	1021	1021;1033		85.359	11.385	1	1948500	+		230	27738	146	147	289;290	289					0.09668868917037798
ADKWVAAVG	9	Unmodified	_ADKWVAAVG_					0	0	0		ENST00000496594.5_1_9:130883426-130884979:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000496594.5_1_9:130883426-130884979:-|nuORF	ENST00000496594.5_1_9:130883426-130884979:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.7640380859375	2	458.747985	915.481417	1.8845	0.00086452	1.3056	0.00059896	3.1902	0.0014635	458.74958488412597	23.6	0.40495	23.409	23.167	23.572	-0.19117					13	9	2	0	0	0	0.024386	1	893	893		42.474	0	1	30970			231	6020	147	148	291	291					0.02029515725996589
ADLDKLNI	8	Unmodified	_ADLDKLNI_					0	0	0		nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000551690.1_1_12:111172684-111180512:-|nuORF	nc|ENSG00000186298|P36873-2|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	MSMS	OPSCC_39_ClassI_Rep-3	3	451.2540283203125	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.899	1	36.937	36.437	37.437	0.038044								0	0	0	0.34404	1	2912	2912		74.255	2.9593	1				232	9536	148	149	292	292					0.037420786605480316
ADLLLAPVA	9	Unmodified	_ADLLLAPVA_					0	0	0		ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENST00000525402.5_1_11:67274418-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7685241699219	2	441.768386	881.522219	0.14561	6.4327E-05	-1.2505	-0.00055245	-1.1049	-0.00048812	441.76790990667746	102.78	1.6063	102.79	102.46	104.06	0.0054169					106	40	5	0	0	0	0.97516	1	13182	13182		25.45	0	1	27080000			233	16094	149	150	293	293					0.07671857045602337
ADLLMVDD	8	Unmodified	_ADLLMVDD_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.7218933105469	2	446.210043	890.405534	0.081225	3.6243E-05	-2.0715	-0.00092434	-1.9903	-0.0008881	446.2089917043135	32.926	0.44904	32.73	32.533	32.982	-0.19555					20	10	3	0	0	0	0.027866	1	2338	2338		33.516	8.0654	1	98927	+		234	19845	150	151	294	294					-0.044052492364585305
ADLLQLNL	8	Unmodified	_ADLLQLNL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.28179931640625	2	450.263468	898.512382	0.83629	0.00037655	1.1759	0.00052944	2.0121	0.000906	450.26485725892866	50.96	0.33844	50.848	50.712	51.051	-0.11163					10	8	2	0	0	0	0.027866	1	5237	5237		38.806	0	1	113030			235	9658	151	152	295	295					0.05906669040211909
ADLLQLNL	8	Unmodified	_ADLLQLNL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.263468	898.512382	0.13307	5.9915E-05	6.7172	0.0030245	6.8503	0.0030844	450.26812137875083	50.758	0.16528	50.609	50.46	50.626	-0.14916	-0.11939	0.00088162	NaN	45.952	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74071			236	9658	151	152							0.05906669040211909
ADLLVLRLP	9	Unmodified	_ADLLVLRLP_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.323974609375	2	505.32386	1008.63317	-0.071224	-3.5991E-05	-0.74214	-0.00037502	-0.81337	-0.00041101	505.32356722396315	78.994	3.687	78.843	78.432	82.119	-0.15051					219	87	6	0	0	0	0.72875	2	9450	9450;9462		44.117	3.1433	1	35565000	+		237	23378	152	153	296;297	296					0.12919496753693238
ADLRSKLSI	9	Unmodified	_ADLRSKLSI_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.8034362792969	2	501.800749	1001.58694	0.36344	0.00018238	2.7321	0.001371	3.0956	0.0015534	501.8020144701798	57.551	0.53634	57.376	57.072	57.608	-0.1749					49	13	5	0	0	0	0.48817	1	6460	6460		60.118	2.307	1	2857800			238	3383	153	154	298	298					0.08621431851622674
ADLSCVLVLP	10	Unmodified	_ADLSCVLVLP_					0	0	0		ENSG00000144230|ENST00000486700|GPR17;nc|ENSG00000144230|Q13304|GPR17;ENST00000486700.1_1_2:128403737-128409326:+|nuORF	ENSG00000144230|ENST00000486700|GPR17	ENSG00000144230|ENST00000486700|GPR17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2720336914062	2	515.286085	1028.55762	-0.83179	-0.00042861	3.2203	0.0016594	2.3885	0.0012308	515.2876367313962	48.533	0.49171	48.6	48.378	48.87	0.066795					32	13	3	0	0	0	0.03519	1	4932	4932		47.916	10.756	1	1957700			239	5723	154	155	299	299					0.044481515111101544
ADLVKMLTE	9	Unmodified	_ADLVKMLTE_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2762145996094	2	510.275718	1018.53688	0.84661	0.000432	-3.7806	-0.0019292	-2.934	-0.0014972	510.2735046597124	70.94	0.97894	70.647	70.368	71.347	-0.29291					50	23	4	0	0	0	0.024541	1	8602	8602		26.693	0	1	1448500			240	3255	155	156	300	300					0.0283556113143959
ADLVLLDN	8	Unmodified	_ADLVLLDN_					0	0	0		ENST00000219771.7_1_16:29690360-29708729:+|nuORF;ENSG00000103485|ENST00000395384|QPRT	ENST00000219771.7_1_16:29690360-29708729:+|nuORF	ENST00000219771.7_1_16:29690360-29708729:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.93389892578125	2	436.739825	871.465098	0.083092	3.6289E-05	-2.7005	-0.0011794	-2.6174	-0.0011431	436.73848283960973	20.734	0.3905	20.566	20.345	20.736	-0.16774					13	7	2	0	0	0	0.027866	1	569	569		12.207	0	1	138700			241	2505	156	157	301	301					0.024223897692309038
ADMAYKINL	9	Unmodified	_ADMAYKINL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.3052368164062	2	519.76806	1037.52157	-1.203	-0.00062527	3.5107	0.0018248	2.3077	0.0011995	519.7702573746684	93.78	0.90124	93.64	93.309	94.211	-0.13995					40	20	3	0	0	0	0.024263	1	11517	11517		42.396	0	1	256080	+		242	36722	157	158	302	302					0.004306943342498926
ADMGHLKY	8	Unmodified	_ADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.2626647949219	2	467.726195	933.437837	-0.1756	-8.2133E-05	0.31685	0.0001482	0.14126	6.6069E-05	467.7261173446275	43.454	0.87915	43.341	43.109	43.988	-0.11253					50	23	3	0	0	0	0.027866	1	3990	3990		76.774	46.27	1	2617600			243	4632	158	159	303	303					-0.03154417042787827
ADMGHLKY	8	Unmodified	_ADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.72589111328125	2	467.726195	933.437837	-0.63804	-0.00029843	0.46262	0.00021638	-0.17541	-8.2046E-05	467.72617944002786	43.636	0.91621	43.398	43.136	44.052	-0.23737					48	24	3	0	0	0	0.27973	1	3995	3995		120.62	51.834	1	4309200			244	4632	158	159	304	304					-0.03154417042787827
ADMGHLKY	8	Unmodified	_ADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.72576904296875	2	467.726195	933.437837	-1.1134	-0.00052076	0.63648	0.0002977	-0.47691	-0.00022306	467.7262906606949	43.693	0.86344	43.473	43.176	44.04	-0.21939					57	23	4	0	0	0	0.32162	2	3995	3995;4006		108.09	50.635	1	5668300			245	4632	158	159	305;306	305					-0.03154417042787827
ADMRRRMYE	9	Unmodified	_ADMRRRMYE_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.8804931640625	3	409.862225	1226.56485	1.4865	0.00060927	0.83935	0.00034402	2.3259	0.00095328	409.8625529056308	33.183	0.28257	33.24	33.141	33.423	0.056572					10	7	2	0	0	0	0.024541	1	2341	2341		17.468	0	1	120450	+		246	24168	159	160	307	307					-0.03937439160131362
ADNHILPNE	9	Unmodified	_ADNHILPNE_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENSG00000198176|ENST00000375370|TFDP1;TUBGCP3-TFDP1|1|fusion	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.7738342285156	2	511.748713	1021.48287	0.87736	0.00044899	-0.45287	-0.00023176	0.42448	0.00021723	511.74804686496293	36.838	1.0695	36.629	36.364	37.434	-0.2092					61	26	4	0	0	0	0.024319	1	2935	2935		39.253	8.7492	1	718160			247	16486	160	161	308	308					-0.027008949758965173
ADNIFIFVL	9	Unmodified	_ADNIFIFVL_					0	0	0		nc|ENSG00000015520|Q9UHC9-3|NPC1L1;nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1	nc|ENSG00000015520|Q9UHC9-3|NPC1L1	nc|ENSG00000015520|Q9UHC9-3|NPC1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2506103515625	2	526.294768	1050.57498	-0.97093	-0.00051099	-1.93	-0.0010158	-2.9009	-0.0015267	526.2930211290337	62.274	1.3051	62.096	61.078	62.383	-0.17781					91	32	4	0	0	0	0.024436	1	6955	6955		30.504	10.507	1	6166600			248	933	161	162	309	309					0.051718151084287456
ADPAEWEA	8	Unmodified	_ADPAEWEA_					0	0	0		ENST00000327359.7_1_14:105695225-105781678:-|nuORF;ENST00000548421.2_1_14:105722813-105767174:-|nuORF	ENST00000327359.7_1_14:105695225-105781678:-|nuORF	ENST00000327359.7_1_14:105695225-105781678:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.7267150878906	2	444.690333	887.366112	-0.67657	-0.00030086	-1.0527	-0.00046811	-1.7292	-0.00076897	444.68987003107156	38.998	0.45838	38.775	38.577	39.035	-0.22311					18	12	2	0	0	0	0.027866	1	3275	3275		18.324	0.95945	1	249420			249	12291	162	163	310	310					-0.08207633195661401
ADPCRPSAAL	10	Unmodified	_ADPCRPSAAL_					0	0	0		ENST00000242209.8_1_7:32997103-33014231:+|nuORF	ENST00000242209.8_1_7:32997103-33014231:+|nuORF	ENST00000242209.8_1_7:32997103-33014231:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.74676513671875	2	500.747659	999.480765	-0.31893	-0.00015971	-3.283	-0.001644	-3.602	-0.0018037	500.7459488157	53.077	1.3175	52.887	52.43	53.747	-0.18982					94	35	4	0	0	0	0.59716	1	5547	5547		77.318	0.54344	1	8293900			250	11288	163	164	311	311					-0.01899646985373238
ADPEAAWE	8	Unmodified	_ADPEAAWE_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.7268371582031	2	444.690333	887.366112	-1.2663	-0.00056309	-1.4823	-0.00065917	-2.7486	-0.0012223	444.68962174647436	38.864	0.45349	38.7	38.554	39.008	-0.16458					16	12	2	0	0	0	0.027866	1	3244	3244		30.504	8.5438	1	204150			251	4192	164	165	312	312					-0.08207633195661401
ADPLVALSNW	10	Unmodified	_ADPLVALSNW_					0	0	0			REV__ENSG00000099769|ENST00000215539|IGFALS	REV__ENSG00000099769|ENST00000215539|IGFALS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2720336914062	2	543.284931	1084.55531	-1.2284	-0.00066736	1.6583	0.00090093	0.42992	0.00023357	543.2856363612644	55.548	0.60065	55.391	55.112	55.713	-0.15655					44	16	4	0	0	0	0.03519	1	5928	5928		71.296	0	1	859710	+		252	21009	165	166	313	313					0.0164143909764789
ADPPLLRRRQT	11	Unmodified	_ADPPLLRRRQT_					0	0	0			REV__ENST00000541448.5_1_12:124457850-124458536:+|nuORF	REV__ENST00000541448.5_1_12:124457850-124458536:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.8533630371094	3	441.593232	1321.75787	-0.18367	-8.1105E-05	2.9356	0.0012963	2.7519	0.0012152	441.594417283567	31.634	0.61272	31.449	31.208	31.821	-0.18503					22	14	2	0	0	0	0.024734	1	2167	2167		30.139	9.8241	1	104050	+		253	34734	166	167	314	314					0.10985762222935591
ADPTVKLGAVG	11	Unmodified	_ADPTVKLGAVG_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.31103515625	2	514.292756	1026.57096	-0.43507	-0.00022375	0.37302	0.00019184	-0.062051	-3.1912E-05	514.2928844482653	78.471	0.91533	78.471	78.162	79.077	0					44	21	3	0	0	0	0.024723	1	9750	9750		17.468	5.957	1	369120			254	1416	167	168	315	315					0.058737256147196604
ADPTVKLGAVG	11	Unmodified	_ADPTVKLGAVG_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.292756	1026.57096	0.27924	0.00014361	-0.12127	-6.237E-05	0.15797	8.1243E-05	514.2926624171248	78.617	0.87019	78.425	78.096	78.966	-0.1921	-0.03428	-0.00033959	NaN	23.523	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402200			255	1416	167	168							0.058737256147196604
ADPTVKLGAVG	11	Unmodified	_ADPTVKLGAVG_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.292756	1026.57096	-0.63625	-0.00032722	0.34312	0.00017646	-0.29313	-0.00015076	514.2928827722787	78.465	0.83043	78.481	78.195	79.026	0.015907	0.02216	0.00013807	NaN	23.523	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385130			256	1416	167	168							0.058737256147196604
ADQEVLAVR	9	Unmodified	_ADQEVLAVR_					0	0	0			REV__ENSG00000082175|ENST00000325455|PGR	REV__ENSG00000082175|ENST00000325455|PGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7746887207031	2	500.774731	999.534909	0.191	9.5646E-05	0.0032765	1.6408E-06	0.19427	9.7287E-05	500.77461231056833	50.777	1.3549	50.501	50.149	51.504	-0.27643					87	35	4	0	0	0	0.14181	1	5170	5170		101.25	2.6706	1	16717000	+		257	20690	168	169	316	316					0.035122684378507074
ADQEVLAVR	9	Unmodified	_ADQEVLAVR_					0	0	0			REV__ENSG00000082175|ENST00000325455|PGR	REV__ENSG00000082175|ENST00000325455|PGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7747497558594	2	500.774731	999.534909	-0.035248	-1.7652E-05	0.18947	9.4884E-05	0.15423	7.7232E-05	500.7747404907621	50.693	1.166	50.513	50.055	51.222	-0.18071					83	30	4	0	0	0	0.14024	1	5146	5146		101.6	0.34809	1	16461000	+		258	20690	168	169	317	317					0.035122684378507074
ADQIRPIF	8	Unmodified	_ADQIRPIF_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.26947021484375	2	480.269084	958.523616	0.71731	0.0003445	-0.41916	-0.00020131	0.29815	0.00014319	480.26872216402575	67.205	0.87779	66.957	66.749	67.627	-0.24839					48	20	3	0	0	0	1.0009	1	7734	7734		37.159	2.9866	1	1631700			259	6506	169	170	318	318					0.042694911343687636
ADQIRPIF	8	Unmodified	_ADQIRPIF_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.26806640625	2	480.269084	958.523616	-0.20934	-0.00010054	0.7354	0.00035319	0.52606	0.00025265	480.2692585827361	67.114	0.94209	66.869	66.64	67.582	-0.24517					51	23	3	0	0	0	0.77775	2	7699	7699;7723		60.972	8.6728	1	3512200			260	6506	169	170	319;320	319					0.042694911343687636
ADQLLPYDP	9	Unmodified	_ADQLLPYDP_					0	0	0			REV__nc|ENSG00000159842|Q12979-4|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3004150390625	2	516.25584	1030.49713	-1.2917	-0.00066685	-1.6408	-0.00084706	-2.9325	-0.0015139	516.2543114001976	34.616	0.63336	34.666	34.089	34.723	0.050251					19	15	2	0	0	0	0.023454	1	2462	2462		62.107	12.666	1	93200	+		261	25277	170	171	321	321					-0.016902425476018834
ADQPGWPWPLQ	11	Unmodified	_ADQPGWPWPLQ_					0	0	0			REV__ENST00000588254.1_1_19:56000611-56002653:+|nuORF	REV__ENST00000588254.1_1_19:56000611-56002653:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.811767578125	2	647.814387	1293.61422	-2.445	-0.0015839	-2.6234	-0.0016995	-5.0684	-0.0032834	647.8127220537594	62.792	1.6359	62.571	62.237	63.873	-0.22097					94	43	4	0	0	0	0.96599	1	7087	7087		44.377	0.7264	1	14041000	+		262	35648	171	172	322	322					-0.020840846079863695
ADRGKRVK	8	Unmodified	_ADRGKRVK_					0	0	0			REV__ENST00000574728.1_1_17:1583983-1584260:-|nuORF	REV__ENST00000574728.1_1_17:1583983-1584260:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2689208984375	2	465.2856	928.556647	-0.46473	-0.00021623	-0.28679	-0.00013344	-0.75152	-0.00034967	465.2849038241098	38.492	0.3907	38.409	38.254	38.645	-0.082512					11	9	2	0	0	0	0.027866	1	3224	3224		21.96	0	1	75963	+		263	35451	172	173	323	323					0.08951117977085232
ADRLGLLVP	9	Unmodified	_ADRLGLLVP_					0	0	0			REV__ENST00000587385.6_1_19:34895335-34895721:+|nuORF	REV__ENST00000587385.6_1_19:34895335-34895721:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.29290771484375	2	477.292559	952.570566	-0.21527	-0.00010275	-0.20941	-9.995E-05	-0.42468	-0.0002027	477.29233246318427	51.536	0.73089	51.389	51.046	51.777	-0.14735					50	20	3	0	0	0	0.72875	1	5453	5453		44.117	3.3386	1	3281600	+		264	22886	173	174	324	324					0.09238350685529895
ADRLQRSK	8	Unmodified	_ADRLQRSK_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2921142578125	2	487.280515	972.546476	0.59603	0.00029043	0.83527	0.00040701	1.4313	0.00069745	487.28120658464906	78.062	0.53622	77.87	77.48	78.016	-0.1921					18	12	2	0	0	0	0.027866	1	9625	9625		45.952	0	1	128890	+		265	21710	174	175	325	325					0.059105102518515196
ADRPHLAQP	9	Unmodified	_ADRPHLAQP_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7507629394531	2	502.76724	1003.51993	-0.40939	-0.00020583	-1.4706	-0.00073939	-1.88	-0.00094521	502.76330407281193	33.909	0.77803	33.909	33.554	34.332	0					35	19	3	0	0	0	0.024205	1	2473	2473		35.618	0	1	532700	+		266	28398	175	176	326	326					0.0183082136052235
ADRPHWVL	8	Unmodified	_ADRPHWVL_					0	0	0			REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2684326171875	2	497.266876	992.519199	-0.39739	-0.00019761	2.9734	0.0014786	2.576	0.001281	497.26831478291894	35.326	1.0994	35.326	34.629	35.728	0					103	28	5	0	0	0	0.6536	2	2711	2688;2711		71.296	11.002	1	13547000	+		267	30424	176	177	327;328	328					0.022640267114638846
ADRPHWVL	8	Unmodified	_ADRPHWVL_					0	0	0			REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.82122802734375	2	497.266876	992.519199	0.55231	0.00027464	3.6734	0.0018266	4.2257	0.0021013	497.2691429669596	42.435	0.38688	42.435	42.255	42.642	0					26	10	3	0	0	0	0.027866	1	3881	3881		11.511	0	1	273370	+		268	30424	176	177	329	329					0.022640267114638846
ADRPHWVL	8	Unmodified	_ADRPHWVL_					0	0	0			REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2684326171875	2	497.266876	992.519199	-0.9526	-0.0004737	3.5366	0.0017586	2.584	0.0012849	497.26859640888404	35.147	1.0325	35.125	34.435	35.468	-0.021767					91	26	4	0	0	0	0.74904	2	2708	2660;2708		63.306	11.971	1	13428000	+		269	30424	176	177	330;331	331					0.022640267114638846
ADRPHWVL	8	Unmodified	_ADRPHWVL_					0	0	0			REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2684020996094	2	497.266876	992.519199	-0.9516	-0.0004732	3.7079	0.0018438	2.7563	0.0013706	497.2686713115808	35.956	3.1262	35.913	35.405	38.532	-0.042454					203	85	4	0	0	0	0.6536	1	2731	2731		71.296	5.4925	1	11825000	+		270	30424	176	177	332	332					0.022640267114638846
ADRPHWVL	8	Unmodified	_ADRPHWVL_					0	0	0			REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	REV__ENST00000327906.7_1_3:52444857-52444917:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2687683105469	2	497.266876	992.519199	-0.35959	-0.00017881	3.0981	0.0015406	2.7385	0.0013618	497.26837861192877	36.109	3.0502	36.147	35.652	38.702	0.038044					198	83	4	0	0	0	0.56592	1	2857	2857		79.451	18.479	1	12565000	+		271	30424	176	177	333	333					0.022640267114638846
ADRVEAVCTL	10	Unmodified	_ADRVEAVCTL_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.7762451171875	2	538.773874	1075.53319	-0.14352	-7.7326E-05	3.7021	0.0019946	3.5586	0.0019173	538.7758570321666	57.358	0.81538	57.156	56.962	57.777	-0.20209					41	21	3	0	0	0	0.86389	1	6277	6277		56.434	3.4971	1	2077200			272	2547	177	178	334	334					-0.0015510864241150557
ADSIAVHH	8	Unmodified	_ADSIAVHH_					0	0	0			REV__nc|ENSG00000004660|Q8N5S9-2|CAMKK1	REV__nc|ENSG00000004660|Q8N5S9-2|CAMKK1	MSMS	OPSCC_40_ClassI_Rep-3	6	424.89776611328125	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.228	1	16.978	16.478	17.478	-0.25049								0	0	0	0.97952	1	132	132		21.702	3.3779	1		+		273	19781	178	179	335	335					-0.01620514484955038
ADSPWLLSN	9	Unmodified	_ADSPWLLSN_					0	0	0		nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2	nc|ENSG00000008735|Q13387-2|MAPK8IP2	nc|ENSG00000008735|Q13387-2|MAPK8IP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78173828125	2	501.748182	1001.48181	-0.15589	-7.8219E-05	2.1339	0.0010707	1.978	0.00099246	501.7491135808483	45.692	0.60686	45.692	45.278	45.885	0					25	17	2	0	0	0	0.024427	1	4396	4396		26.693	0	1	206740			274	851	179	180	336	336					-0.018871093448069587
ADSTLSAGAPG	11	Unmodified	_ADSTLSAGAPG_					0	0	0			REV__nc|ENSG00000129255|O75352-2|MPDU1	REV__nc|ENSG00000129255|O75352-2|MPDU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7558288574219	2	473.727446	945.44034	0.45503	0.00021556	0.21263	0.00010073	0.66766	0.00031629	473.72751636717885	42.9	0.90664	42.9	42.715	43.621	0					41	24	3	0	0	0	0.024743	1	3955	3955		27.882	10.517	1	396250	+		275	36650	180	181	337	337					-0.03456290104134041
ADTANVTIVKV	11	Unmodified	_ADTANVTIVKV_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8264770507812	2	565.824421	1129.63429	0.12678	7.1734E-05	3.1448	0.0017794	3.2716	0.0018511	565.8263241095059	105.16	0.30887	105.04	104.88	105.19	-0.12444					17	8	3	0	0	0	0.59134	1	13088	13088		70.399	3.4366	1	196890	+		276	20725	181	182	338	338					0.07465666331927423
ADTAPEPVGPH	11	Unmodified	_ADTAPEPVGPH_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.7638549804688	2	545.76182	1089.50909	4.4495	0.0024284	-0.15404	-8.4067E-05	4.2954	0.0023443	545.7615757885601	17.558	0.84982	17.618	17.454	18.304	0.06036					41	21	3	0	0	0	1.0614	1	142	142		21.96	1.013	1	134830	+		277	22754	182	183	339	339					-0.03208625804450094
ADTNKTKGG	9	Unmodified	_ADTNKTKGG_					0	0	0		nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	446.2318115234375	2	446.230156	890.445759	0.22578	0.00010075	3.3039	0.0014743	3.5297	0.001575	446.23159610244517	101.7	1.5633	101.57	100.98	102.54	-0.12576					112	37	5	0	0	0	0.91321	1	12668	12668		31.53	1.0262	1	4963200			278	1263	183	184	340	340					-0.0038456652165450578
ADTQIVVCL	9	Carbamidomethyl (C)	_ADTQIVVC(Carbamidomethyl (C))L_	ADTQIVVC(1)L		ADTQIVVC(72)L		0	1	0		nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.75982666015625	2	509.765517	1017.51648	-0.24962	-0.00012725	-3.9876	-0.0020327	-4.2372	-0.00216	509.76355391283346	49.38	1.5658	49.101	48.465	50.031	-0.27977					133	41	6	0	0	0	0.32811	1	4990	4990		71.877	7.6702	1	50083000			279	4090	184	185	341	341	50				0.008423904716323705
ADTVGDDDEA	10	Unmodified	_ADTVGDDDEA_					0	0	0		ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;nc|ENSG00000138835|P49796-9|RGS3;nc|ENSG00000138835|P49796-4|RGS3;nc|ENSG00000138835|P49796-2|RGS3;ENST00000488620.5_1_9:116327559-116353744:+|nuORF;nc|ENSG00000138835|P49796-1|RGS3	ENSG00000138835|ENST00000695401|RGS3	ENSG00000138835|ENST00000695401|RGS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.75823974609375	2	504.193633	1006.37271	-0.31614	-0.0001594	-0.84929	-0.00042821	-1.1654	-0.0005876	504.19327185732743	59.934	0.36031	59.734	59.577	59.938	-0.20016					12	9	2	0	0	0	0.03519	1	6842	6842		27.882	0	1	78213			280	5293	185	186	342	342					-0.1302178482560521
ADVGTVLKVI	10	Unmodified	_ADVGTVLKVI_					0	0	0		ENST00000416295.1_1_3:50312110-50312520:+|nuORF	ENST00000416295.1_1_3:50312110-50312520:+|nuORF	ENST00000416295.1_1_3:50312110-50312520:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.78826904296875	2	507.813325	1013.6121	0.46003	0.00023361	-0.18663	-9.4774E-05	0.2734	0.00013883	507.8130265655695	72.02	0.72192	72.029	71.728	72.45	0.0097733					41	18	3	0	0	0	0.03519	1	8670	8670		76.774	12.567	1	1300900			281	13897	186	187	343	343					0.10583486654184071
ADVHEVGPGP	10	Unmodified	_ADVHEVGPGP_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7507629394531	2	489.237981	976.461409	-0.57713	-0.00028235	1.4218	0.00069561	0.84469	0.00041325	489.23833866378163	35.061	0.44462	35.061	34.826	35.27	0					19	11	2	0	0	0	0.03519	1	2661	2661		45.952	11.779	1	152220			282	4229	187	188	344	344					-0.02776280004616183
ADVHEVGPGP	10	Unmodified	_ADVHEVGPGP_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7509460449219	2	489.237981	976.461409	-0.88698	-0.00043394	1.1686	0.00057174	0.28165	0.0001378	489.2383950647851	34.83	0.36867	34.88	34.723	35.091	0.050251					16	9	2	0	0	0	0.03519	1	2562	2562		29.15	4.6304	1	161050			283	4229	187	188	345	345					-0.02776280004616183
ADVHKAHSI	9	Unmodified	_ADVHKAHSI_					0	0	0		ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.2615661621094	2	489.261791	976.509028	-0.25762	-0.00012604	0.062428	3.0544E-05	-0.19519	-9.55E-05	489.261688519878	45.941	0.59002	45.845	45.597	46.187	-0.096653					40	15	4	0	0	0	0.67687	1	4400	4400		47.657	1.7054	1	1668300			284	14867	188	189	346	346					0.019834189862194762
ADVHKAHSI	9	Unmodified	_ADVHKAHSI_					0	0	0		ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	489.261791	976.509028	-0.072062	-3.5257E-05	1.34	0.00065559	1.2679	0.00062033	489.26215512407833	45.899	0.3072	45.899	45.748	46.056	0	0.027113	0.0011181	NaN	47.657	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253050			285	14867	188	189							0.019834189862194762
ADVHKAHSI	9	Unmodified	_ADVHKAHSI_					0	0	0		ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	489.261791	976.509028	-0.88051	-0.0004308	1.3956	0.00068279	0.51506	0.000252	489.26250636810914	45.944	0.30654	45.792	45.683	45.989	-0.15157	-0.080124	0.0011725	NaN	47.657	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261230			286	14867	188	189							0.019834189862194762
ADVHKAHSI	9	Unmodified	_ADVHKAHSI_					0	0	0		ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.261791	976.509028	-0.47415	-0.00023198	1.5081	0.00073783	1.0339	0.00050585	489.2625526419148	45.877	0.58313	45.924	45.754	46.337	0.046864	0.052198	0.0012826	NaN	47.657	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209280			287	14867	188	189							0.019834189862194762
ADVHKAHSI	9	Unmodified	_ADVHKAHSI_					0	0	0		ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.261791	976.509028	-0.18902	-9.248E-05	-0.27101	-0.00013259	-0.46003	-0.00022507	489.2614939357495	46.171	0.75617	45.91	45.593	46.35	-0.26118	0.038155	-0.00045826	NaN	47.657	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1574300			288	14867	188	189							0.019834189862194762
ADVHKAHSI	9	Unmodified	_ADVHKAHSI_					0	0	0		ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	ENST00000468377.1_1_3:128220867-128221029:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	489.261791	976.509028	-0.53787	-0.00026316	0.02293	1.1219E-05	-0.51494	-0.00025194	489.2616767521639	46.064	0.73803	45.862	45.598	46.336	-0.20226	-0.010076	-0.00017064	NaN	47.657	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2878500			289	14867	188	189							0.019834189862194762
ADVHKGTK	8	Unmodified	_ADVHKGTK_					0	0	0			REV__ENST00000545247.6_1_11:18505612-18548363:-|nuORF	REV__ENST00000545247.6_1_11:18505612-18548363:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.87042236328125	2	428.237784	854.461016	0.3216	0.00013772	0.048324	2.0694E-05	0.36992	0.00015841	428.23762808201855	36.622	0.56134	36.406	36.088	36.65	-0.21661					16	13	2	0	0	0	0.027866	1	2895	2895		50.025	16.509	1	164090	+		290	20522	189	190	347	347					0.027963450661900424
ADVLCEFLEV	10	Unmodified	_ADVLCEFLEV_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376655.1_1_1:11737515-11751604:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.27685546875	2	569.278457	1136.54236	-1.108	-0.00063075	-2.0889	-0.0011892	-3.1969	-0.0018199	569.2769780262627	79.841	2.7082	79.669	79.15	81.858	-0.17225					169	65	4	0	0	0	0.85955	1	10003	10003		56.721	0	1	2401400			291	3561	190	191	348	348					-0.020447600767511176
ADVVDSETVV	10	Unmodified	_ADVVDSETVV_					0	0	0		ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	ENSG00000103067|ENST00000473183|ESRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2677001953125	2	517.256037	1032.49752	-0.39805	-0.00020589	2.1289	0.0011012	1.7309	0.0008953	517.2575318864348	31.214	0.87285	31.225	30.791	31.663	0.011799					43	20	3	0	0	0	0.03519	1	2090	2090		51.335	6.9583	1	281720			292	2466	191	192	349	349					-0.017428676184181313
ADWAAKKLV	9	Unmodified	_ADWAAKKLV_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;MYH9-TXN2|1|fusion;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.30682373046875	2	501.292559	1000.57057	-0.52829	-0.00026483	-3.8928	-0.0019514	-4.4211	-0.0022163	501.29051704362394	96.867	0.78271	96.706	96.168	96.951	-0.16106					30	17	2	0	0	0	0.024354	1	11948	11948		16.473	0	1	182870			293	2185;18010	192	193	350	350					0.07030350685511166
ADWGQSRDA	9	Unmodified	_ADWGQSRDA_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.2226867675781	2	503.222862	1004.43117	0.044547	2.2417E-05	0.34313	0.00017267	0.38768	0.00019509	503.22282690402625	46.769	1.1179	46.672	46.403	47.521	-0.096649					70	30	4	0	0	0	0.5973	1	4538	4538		52.937	1.6012	1	2327300			294	5538	193	194	351	351					-0.07086638669818512
ADWGQSRDA	9	Unmodified	_ADWGQSRDA_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.2229309082031	2	503.222862	1004.43117	-0.0036044	-1.8138E-06	0.31338	0.0001577	0.30978	0.00015589	503.2228423874563	47.082	1.2188	46.813	46.526	47.745	-0.26939					67	33	3	0	0	0	0.26966	1	4572	4572		79.713	13.909	1	2853600			295	5538	193	194	352	352					-0.07086638669818512
ADWGQSRDA	9	Unmodified	_ADWGQSRDA_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.22271728515625	2	503.222862	1004.43117	-0.641	-0.00032256	1.1657	0.00058661	0.52471	0.00026404	503.22316899704015	46.893	1.1745	46.699	46.415	47.589	-0.19387					73	32	4	0	0	0	0.74711	1	4537	4537		42.864	2.0861	1	3001300			296	5538	193	194	353	353					-0.07086638669818512
ADWKYQSGL	9	Unmodified	_ADWKYQSGL_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2636108398438	2	534.261456	1066.50836	-0.54148	-0.00028929	-2.7582	-0.0014736	-3.2997	-0.0017629	534.2599797791811	30.938	0.37134	30.786	30.597	30.968	-0.15231					14	8	2	0	0	0	0.024374	1	1975	1975		40.778	12.896	1	223260			297	6581	194	195	354	354					-0.02223420453469771
ADWKYQSGL	9	Unmodified	_ADWKYQSGL_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.261456	1066.50836	-1.4634	-0.00078185	-2.0838	-0.0011133	-3.5472	-0.0018951	534.2603772637194	30.941	0.24919	30.941	30.797	31.047	0	0.16836	0.00054028	NaN	40.778	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128110			298	6581	194	195							-0.02223420453469771
ADWKYQSGL	9	Unmodified	_ADWKYQSGL_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.261456	1066.50836	-0.79922	-0.00042699	-1.0517	-0.00056188	-1.8509	-0.00098887	534.2612933174713	30.838	0.45698	30.85	30.627	31.084	0.011797	0.076858	0.0016431	NaN	40.778	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131270			299	6581	194	195							-0.02223420453469771
ADWKYQSGL	9	Unmodified	_ADWKYQSGL_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.261456	1066.50836	-1.1404	-0.00060927	-2.0544	-0.0010976	-3.1948	-0.0017068	534.2602878550796	30.448	0.37126	30.522	30.337	30.708	0.074314	-0.25052	0.00057168	NaN	40.778	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111610			300	6581	194	195							-0.02223420453469771
ADWRLYLF	8	Unmodified	_ADWRLYLF_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000487574.1_1_2:113953766-113955491:+|nuORF;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3005981445312	2	542.284734	1082.55492	-1.4577	-0.00079047	0.53129	0.00028811	-0.92638	-0.00050236	542.283942557051	64.819	0.52303	64.819	64.46	64.983	0					20	13	3	0	0	0	0.027866	1	7625	7625		52.299	2.2746	1	503360			301	4123;13785	195	196	355	355					0.016940641684641378
ADYDPALQV	9	Unmodified	_ADYDPALQV_					0	0	0			REV__ENST00000482216.1_1_5:120911545-120911773:-|nuORF	REV__ENST00000482216.1_1_5:120911545-120911773:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	496.2387390136719	2	496.24019	990.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.29	1	31.105	30.605	31.605	-0.18503								0	0	0	0.61872	1	2064	2064		37.159	1.5408	1		+		302	33480	196	197	356	356					-0.029788155817186635
ADYITLKSIQK	11	Unmodified	_ADYITLKSIQK_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1	REV__nc|ENSG00000171100|Q13496-2|MTM1	MSMS	OPSCC_39_ClassI_Rep-3	3	640.3673095703125	2	640.366453	1278.71835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.273	1	17.333	16.833	17.833	0.06036								0	0	0	1.4623	1	122	122		17.468	0.99486	1		+		303	26540	197	198	357	357					0.09014197428837178
ADYYNTCFSD	10	Unmodified	_ADYYNTCFSD_					0	0	0		ENSG00000111961|ENST00000367467|SASH1;ENST00000367469.5_2_6:148593465-148761544:+|nuORF	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.2474365234375	3	400.150095	1197.42845	3.2265	0.0012911	-3.0279	-0.0012116	0.1986	7.9469E-05	400.14887558376404	33.002	0.4849	33.058	32.76	33.245	0.056572					14	12	2	0	0	0	0.03519	1	2256	2256		15.333	1.8791	1	109710			304	3160	198	199	358	358					-0.16236274909647364
ADYYNTCFSD	10	Unmodified	_ADYYNTCFSD_					0	0	0		ENSG00000111961|ENST00000367467|SASH1;ENST00000367469.5_2_6:148593465-148761544:+|nuORF	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	400.150095	1197.42845	-0.11312	-4.5265E-05	0.15735	6.2963E-05	0.044227	1.7698E-05	400.15005558624136	33.102	0.29552	33.109	32.928	33.223	0.0066261	0.037853	0.0019975	NaN	10.587	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63985			305	3160	198	199							-0.16236274909647364
ADYYNTCFSD	10	Unmodified	_ADYYNTCFSD_					0	0	0		ENSG00000111961|ENST00000367467|SASH1;ENST00000367469.5_2_6:148593465-148761544:+|nuORF	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.150095	1197.42845	-1.1819	-0.00047294	1.0115	0.00040477	-0.17036	-6.817E-05	400.1507174769881	33.212	0.39986	33.046	32.879	33.278	-0.16565	-0.024991	0.0030229	NaN	10.587	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69527			306	3160	198	199							-0.16236274909647364
AEAAEPRRA	9	Unmodified	_AEAAEPRRA_					0	0	0		ENSG00000070748|ENST00000337653|CHAT	ENSG00000070748|ENST00000337653|CHAT	ENSG00000070748|ENST00000337653|CHAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7459411621094	2	485.756872	969.499192	-0.84292	-0.00040945	3.3268	0.001616	2.4839	0.0012065	485.7586255959696	62.226	0.23106	62.048	61.923	62.154	-0.17781					6	5	2	0	0	0	0.023061	1	6995	6995		90.37	16.115	1	28023			307	1433	199	200	359	359					0.013222309808497812
AEAAIDSPLA	10	Unmodified	_AEAAIDSPLA_					0	0	0			REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2459716796875	2	479.248015	956.481476	1.3104	0.00062802	-2.2697	-0.0010878	-0.95929	-0.00045974	479.24678703948723	51.422	0.6189	51.238	50.942	51.561	-0.18404					37	15	4	0	0	0	0.79525	1	5274	5274		60.972	0.85368	1	1769100	+		308	20860	200	201	360	360					0.001494709353437429
AEADEPIKELL	11	Unmodified	_AEADEPIKELL_					0	0	0			REV__ENSG00000114923|ENST00000358055|SLC4A3	REV__ENSG00000114923|ENST00000358055|SLC4A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.8863525390625	3	409.887088	1226.63943	0.50506	0.00020702	-2.7688	-0.0011349	-2.2638	-0.00092789	409.88602842554144	34.648	1.3151	34.648	34.332	35.647	0					99	34	4	0	0	0	0.92638	1	2622	2622		50.034	3.5767	1	12931000	+		309	22155	201	202	361	361					0.03517925403912159
AEAEEHFP	8	Unmodified	_AEAEEHFP_					0	0	0		ENSG00000168959|ENST00000305447|GRM5;nc|ENSG00000168959|P41594-2|GRM5	ENSG00000168959|ENST00000305447|GRM5	ENSG00000168959|ENST00000305447|GRM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2377624511719	2	465.203607	928.392661	-1.3431	-0.0006248	-1.9553	-0.00090963	-3.2984	-0.0015344	465.202581646502	30.495	0.78028	30.495	29.977	30.758	0					25	18	2	0	0	0	0.027866	1	1925	1925		35.201	6.0512	1	147550			310	7886	202	203	362	362					-0.07439944304326218
AEAEEHFP	8	Unmodified	_AEAEEHFP_					0	0	0		ENSG00000168959|ENST00000305447|GRM5;nc|ENSG00000168959|P41594-2|GRM5	ENSG00000168959|ENST00000305447|GRM5	ENSG00000168959|ENST00000305447|GRM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.23773193359375	2	465.203607	928.392661	-0.40149	-0.00018678	-3.0968	-0.0014406	-3.4983	-0.0016274	465.20182295301186	30.422	0.70441	30.43	30.042	30.746	0.0086708					29	16	3	0	0	0	0.027866	1	1885	1885		35.201	22.994	1	174480			311	7886	202	203	363	363					-0.07439944304326218
AEAEEHFP	8	Unmodified	_AEAEEHFP_					0	0	0		ENSG00000168959|ENST00000305447|GRM5;nc|ENSG00000168959|P41594-2|GRM5	ENSG00000168959|ENST00000305447|GRM5	ENSG00000168959|ENST00000305447|GRM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2379455566406	2	465.203607	928.392661	-0.29632	-0.00013785	-2.776	-0.0012914	-3.0723	-0.0014293	465.202222735584	30.136	0.62334	30.211	29.879	30.502	0.074314					21	14	2	0	0	0	0.027866	1	1822	1822		26.796	4.8362	1	159770			312	7886	202	203	364	364					-0.07439944304326218
AEAERKAVLRA	11	Unmodified	_AEAERKAVLRA_					0	0	0		ENST00000224807.9_1_10:102792130-102794459:+|nuORF	ENST00000224807.9_1_10:102792130-102794459:+|nuORF	ENST00000224807.9_1_10:102792130-102794459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.7398376464844	3	405.238566	1212.69387	0.48186	0.00019527	-1.269	-0.00051423	-0.7871	-0.00031896	405.57194536477317	31.476	0.38042	31.291	31.099	31.48	-0.18503					11	9	2	0	0	0	0.024739	1	2117	2117		17.167	0	1	83469			313	11203	203	204	365	365					0.09602982065985088
AEAGLDLIPK	10	Unmodified	_AEAGLDLIPK_					0	0	0			REV__ENSG00000105676|ENST00000535612|ARMC6	REV__ENSG00000105676|ENST00000535612|ARMC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.7767333984375	2	513.795132	1025.57571	1.1832	0.00060793	-1.5512	-0.00079702	-0.36804	-0.0001891	513.7948352318771	25.059	0.21737	24.887	24.732	24.95	-0.17151					7	4	2	0	0	0	0.03519	1	1114	1114		20.947	0	1	25139	+		314	21554	204	205	366	366					0.06394609757467151
AEAGSGHMNYI	11	Oxidation (M)	_AEAGSGHM(Oxidation (M))NYI_		AEAGSGHM(1)NYI		AEAGSGHM(80)NYI	0	0	1		ZNF462-RAD23B|1|fusion;nc|ENSG00000119318|P54727-2|RAD23B;ENSG00000119318|ENST00000358015|RAD23B	ZNF462-RAD23B|1|fusion	ZNF462-RAD23B|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.2484741210938	2	583.250763	1164.48697	-1.9257	-0.0011232	-1.3049	-0.00076107	-3.2306	-0.0018843	583.2497855339101	80.247	0.92255	80.096	79.758	80.68	-0.15168					56	21	4	0	0	0	0.44817	1	9922	9922		79.713	10.926	1	2197100			315	38192	205	206	367	367		996			-0.0886917354448542
AEAKKVMKRNF	11	Unmodified	_AEAKKVMKRNF_					0	0	0		ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.2526550292969	3	441.251818	1320.73363	1.2654	0.00055834	1.9936	0.00087967	3.2589	0.001438	441.2525954706037	110.33	0.52612	110.33	110.08	110.61	0					37	13	3	0	0	0	1.0621	1	14036	14036		21.78	0.094677	1	327170			316	8793	206	207	368	368					0.08608785745059322
AEAKMEITI	9	Oxidation (M)	_AEAKM(Oxidation (M))EITI_		AEAKM(1)EITI		AEAKM(96)EITI	0	0	1			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2641296386719	2	511.26535	1020.51615	-1.0378	-0.00053058	-2.1163	-0.001082	-3.1541	-0.0016126	511.2642190899408	81.006	2.9806	81.03	80.614	83.595	0.023903					179	71	5	0	0	0	0.16468	1	10025	10025		96.19	11.275	1	8810800	+		317	23231	207	208	369	369		690			0.006709707517984498
AEALASTVTL	10	Unmodified	_AEALASTVTL_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7742919921875	2	488.27149	974.528426	-0.46148	-0.00022533	-0.64445	-0.00031467	-1.1059	-0.00054	488.2711359619421	56.24	0.54534	56.084	55.922	56.468	-0.15601					32	14	3	0	0	0	0.03519	1	6211	6211		32.812	7.3622	1	1699900			318	2342	208	209	370	370					0.0401433048649551
AEALASTVTL	10	Unmodified	_AEALASTVTL_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.77471923828125	2	488.27149	974.528426	-1.087	-0.00053076	-0.090035	-4.3962E-05	-1.1771	-0.00057473	488.2712805681144	55.988	0.69074	56.085	55.782	56.473	0.097893					35	18	3	0	0	0	0.03519	1	6128	6128		74.255	5.4682	1	1527300			319	2342	208	209	371	371					0.0401433048649551
AEAPSPIAQI	10	Unmodified	_AEAPSPIAQI_					0	0	0			REV__ENST00000558190.5_1_14:92506508-92506760:-|nuORF	REV__ENST00000558190.5_1_14:92506508-92506760:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7702331542969	2	498.771657	995.528761	-0.13305	-6.6362E-05	-0.68672	-0.00034252	-0.81977	-0.00040888	498.7712153680745	102.24	1.7715	102.24	101.86	103.63	0					91	41	3	0	0	0	1.1088	1	13096	13096		31.53	1.2121	1	321140	+		320	35090	209	210	372	372					0.030817502063200664
AEAQNKPKAIV	11	Unmodified	_AEAQNKPKAIV_					0	0	0			REV__nc|ENSG00000130202|Q92692-2|NECTIN2	REV__nc|ENSG00000130202|Q92692-2|NECTIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.837890625	2	584.837862	1167.66117	0.58746	0.00034357	-1.1534	-0.00067458	-0.56598	-0.00033101	584.8372126199127	52.788	0.83825	52.88	52.602	53.44	0.091938					68	22	5	0	0	0	0.782	2	5588	5588;5596		58.782	5.8453	1	7214900	+		321	23090	210	211	373;374	373					0.08404774943119264
AEAQRELL	8	Unmodified	_AEAQRELL_					0	0	0			REV__nc|ENSG00000095981|Q96T55-5|KCNK16	REV__nc|ENSG00000095981|Q96T55-5|KCNK16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2565002441406	2	465.256174	928.497795	0.72687	0.00033818	-0.8808	-0.0004098	-0.15393	-7.1617E-05	465.25576941565913	59.241	0.8159	59.241	58.895	59.711	0					80	21	5	0	0	0	0.91956	1	6782	6782		49.442	1.5259	1	14942000	+		322	20980	211	212	375	375					0.03068596892092046
AEARLRES	8	Unmodified	_AEARLRES_					0	0	0		ENST00000417281.2_1_5:180674900-180684209:+|nuORF	ENST00000417281.2_1_5:180674900-180684209:+|nuORF	ENST00000417281.2_1_5:180674900-180684209:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.29254150390625	2	466.251423	930.488293	-0.72645	-0.00033871	-2.7754	-0.001294	-3.5018	-0.0016327	466.2500205473844	60.423	0.86053	60.501	60.242	61.103	0.078884					31	22	2	0	0	0	0.027866	1	6930	6930		47.916	12.764	1	223240			323	13913	212	213	376	376					0.020268286065856955
AEARRILA	8	Unmodified	_AEARRILA_					0	0	0		PTPDC1|p.S641Gfs*7|1|0.12|ENSG00000158079|chr9:94101631-94101640|ATGCAGCTTG/-|frameshift_variant;nc|ENSG00000158079|A2A3K4|PTPDC1;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1	PTPDC1|p.S641Gfs*7|1|0.12|ENSG00000158079|chr9:94101631-94101640|ATGCAGCTTG/-|frameshift_variant	PTPDC1|p.S641Gfs*7|1|0.12|ENSG00000158079|chr9:94101631-94101640|ATGCAGCTTG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.27447509765625	2	450.274701	898.534849	0.10472	4.7152E-05	-1.1606	-0.00052261	-1.0559	-0.00047546	450.27420091803094	92.333	2.0403	92.192	91.748	93.788	-0.14131					175	47	6	0	0	0	1.0338	1	11428	11428		31.955	1.4512	1	53243000			324	6644	213	214	377	377					0.08152313228515595
AEASAFAVVL	10	Unmodified	_AEASAFAVVL_					0	0	0			REV__ENSG00000163737|ENST00000296029|PF4	REV__ENSG00000163737|ENST00000296029|PF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2705078125	2	489.26875	976.522947	-0.39377	-0.00019266	3.4479	0.001687	3.0541	0.0014943	489.270593923878	38.922	1.5173	38.922	38.433	39.951	0					145	41	5	0	0	0	0.75995	1	3277	3277		63.306	7.8021	1	53004000	+		325	25626	214	215	378	378					0.03374651694673503
AEASAFAVVL	10	Unmodified	_AEASAFAVVL_					0	0	0			REV__ENSG00000163737|ENST00000296029|PF4	REV__ENSG00000163737|ENST00000296029|PF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.27044677734375	2	489.26875	976.522947	-0.59343	-0.00029035	3.5714	0.0017474	2.9779	0.001457	489.2706764402166	38.923	2.0896	38.824	37.902	39.991	-0.098755					164	57	5	0	0	0	0.941	2	3250	3250;3295		51.335	1.6423	1	52366000	+		326	25626	214	215	379;380	379					0.03374651694673503
AEASAILILD	10	Unmodified	_AEASAILILD_					0	0	0		ENST00000255389.9_1_17:17480322-17494885:-|nuORF	ENST00000255389.9_1_17:17480322-17494885:-|nuORF	ENST00000255389.9_1_17:17480322-17494885:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.32025146484375	2	508.28714	1014.55973	-0.37882	-0.00019255	0.39224	0.00019937	0.013418	6.8204E-06	508.2871487538698	73.578	0.448	73.307	73.09	73.538	-0.27126					25	11	3	0	0	0	0.03519	1	8963	8963		42.396	0	1	682190			327	11389	215	216	381	381					0.053029035205895525
AEASAILILD	10	Unmodified	_AEASAILILD_					0	0	0		ENST00000255389.9_1_17:17480322-17494885:-|nuORF	ENST00000255389.9_1_17:17480322-17494885:-|nuORF	ENST00000255389.9_1_17:17480322-17494885:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.28714	1014.55973	-0.77439	-0.00039361	0.50452	0.00025644	-0.26987	-0.00013717	508.287274476899	73.283	0.5637	73.283	72.952	73.516	0	0.027771	0.00012235	NaN	42.396	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	721980			328	11389	215	216							0.053029035205895525
AEASAILILD	10	Unmodified	_AEASAILILD_					0	0	0		ENST00000255389.9_1_17:17480322-17494885:-|nuORF	ENST00000255389.9_1_17:17480322-17494885:-|nuORF	ENST00000255389.9_1_17:17480322-17494885:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.28714	1014.55973	-0.44608	-0.00022674	0.0075863	3.856E-06	-0.43849	-0.00022288	508.2869968455889	73.359	0.67525	73.169	72.886	73.561	-0.19026	-0.086889	-0.00038282	NaN	42.396	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81119			329	11389	215	216							0.053029035205895525
AEASVPDELD	10	Unmodified	_AEASVPDELD_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.75830078125	2	523.237844	1044.46113	-0.83665	-0.00043777	-1.7238	-0.00090195	-2.5604	-0.0013397	523.2368119803195	41.118	0.64198	40.888	40.554	41.196	-0.23029					39	16	3	0	0	0	0.03519	1	3640	3640		32.812	3.6629	1	449250	+		330	23549	216	217	382	382					-0.0593174451514642
AEATSNVLQD	10	Unmodified	_AEATSNVLQD_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3013916015625	2	524.251286	1046.48802	-0.94461	-0.00049521	0.96305	0.00050488	0.018437	9.6658E-06	524.2517528871579	51.697	0.9468	51.784	51.411	52.358	0.087006					49	25	3	0	0	0	0.03519	1	5484	5484		69.628	2.134	1	573720	+		331	22489	217	218	383	383					-0.03336635903951901
AEATVEVVW	9	Unmodified	_AEATVEVVW_					0	0	0			REV__ENST00000586324.1_1_19:37756948-37758090:-|nuORF	REV__ENST00000586324.1_1_19:37756948-37758090:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3233947753906	2	502.258382	1002.50221	-0.55668	-0.0002796	0.62374	0.00031328	0.067062	3.3683E-05	502.25847151934147	73.446	0.55155	73.256	72.967	73.519	-0.19026					22	13	2	0	0	0	0.024412	1	8646	8646		40.573	8.6178	1	265770	+		332	35596	218	219	384	384					0.0010606131500026095
AEAWEEPTEL	10	Unmodified	_AEAWEEPTEL_					0	0	0		ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.7691650390625	2	587.766768	1173.51898	-0.41514	-0.000244	-2.2893	-0.0013456	-2.7044	-0.0015896	588.268222472612	79.444	0.46001	79.293	79.11	79.57	-0.15051					17	10	2	0	0	0	0.03519	1	9520	9520		25.574	0	1	83371			333	4440	219	220	385	385					-0.06083482589679079
AECFGYKPFY	10	Unmodified	_AECFGYKPFY_					0	0	0			REV__ENSG00000176919|ENST00000371634|C8G	REV__ENSG00000176919|ENST00000371634|C8G	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	612.7745361328125	2	612.773342	1223.53213	-0.36844	-0.00022577	2.0573	0.0012606	1.6888	0.0010349	612.7745410128636	51.266	0.64841	50.989	50.665	51.313	-0.27643					57	16	4	0	0	0	0.98754	1	5279	5279		47.657	3.5405	1	7684800	+		334	27061	220	221	386	386					-0.07069323011319284
AEDCGNWAM	9	Unmodified	_AEDCGNWAM_					0	0	0			REV__ENST00000444465.1_1_6:166322399-166324342:-|nuORF	REV__ENST00000444465.1_1_6:166322399-166324342:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.771728515625	2	498.681127	995.347702	-0.60062	-0.00029952	-3.0121	-0.0015021	-3.6127	-0.0018016	498.67982210441374	31.356	0.21983	31.204	31.085	31.305	-0.15231					7	5	2	0	0	0	0.024541	1	2061	2061		17.365	5.8539	1	41301	+		335	32591	221	222	387	387					-0.15015834433518194
AEDDTLDNTFS	11	Unmodified	_AEDDTLDNTFS_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	614.3218994140625	2	614.254222	1226.49389	0.19165	0.00011772	1.9456	0.0011951	2.1373	0.0013128	614.2554551063803	68.62	0.48077	68.39	68.039	68.52	-0.23048					16	11	2	0	0	0	0.024749	1	7889	7889		8.6937	0	1	121200			336	4940	222	223	388	388					-0.11029582182936792
AEDEDEPAP	9	Unmodified	_AEDEDEPAP_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.73687744140625	2	486.693269	971.371985	-0.24098	-0.00011728	-2.8099	-0.0013676	-3.0509	-0.0014848	486.69182520165043	72.42	0.37906	72.222	71.992	72.371	-0.19811					12	8	2	0	0	0	0.024294	1	8500	8500		55.504	2.1528	1	46946	+		337	37079	223	224	389	389					-0.1148457947465431
AEDIMKSFD	9	Oxidation (M)	_AEDIM(Oxidation (M))KSFD_		AEDIM(1)KSFD		AEDIM(82)KSFD	0	0	1			REV__ENSG00000177181|ENST00000431473|RIMKLA	REV__ENSG00000177181|ENST00000431473|RIMKLA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2386474609375	2	536.23679	1070.45903	-1.0488	-0.00056243	3.1753	0.0017027	2.1264	0.0011403	536.2386558258349	60.689	1.9053	60.475	60.157	62.062	-0.21339					130	50	5	0	0	0	0.2508	1	6970	6970		82.241	10.945	1	26122000	+		338	27087	224	225	390	390		805			-0.07338496524585025
AEDKLKESSD	10	Unmodified	_AEDKLKESSD_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2705078125	2	561.269675	1120.5248	-0.77983	-0.00043769	0.23661	0.0001328	-0.54322	-0.00030489	561.2702975131176	26.275	3.302	26.039	25.762	29.064	-0.23603					301	81	8	0	0	0	0.91678	1	1336	1336		52.937	3.4007	1	235830000			339	1533	225	226	391	391					-0.03064384078038529
AEDKLKESSD	10	Unmodified	_AEDKLKESSD_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2703247070312	2	561.269675	1120.5248	-1.2106	-0.00067947	0.83722	0.00046991	-0.37337	-0.00020956	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	1.0002	1	1323	1323		45.972	0	1	242840000			340	1533	225	226	392	392					-0.03064384078038529
AEDNHKKKT	9	Unmodified	_AEDNHKKKT_					0	0	0		nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-4|CASP5	nc|ENSG00000137757|P51878-2|CASP5	nc|ENSG00000137757|P51878-2|CASP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7669677734375	2	535.783087	1069.55162	-0.2761	-0.00014793	3.3946	0.0018188	3.1185	0.0016709	535.7847478544737	37.239	0.51104	37.176	36.941	37.452	-0.063385					30	13	3	0	0	0	0.024344	1	3004	3004		37.812	0	1	390560			341	18316	226	227	393	393					0.01962769323813518
AEDPSTPDPTT	11	Unmodified	_AEDPSTPDPTT_					0	0	0			REV__ENSG00000100099|ENST00000398145|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.7493896484375	2	565.746033	1129.47751	-1.6361	-0.00092561	-1.0274	-0.00058125	-2.6635	-0.0015069	566.247795872905	55.425	0.48706	55.523	55.257	55.744	0.098015					19	12	2	0	0	0	0.023689	1	6041	6041		93.195	13.744	1	181370	+		342	21048	227	228	394	394					-0.08204663349056318
AEDSSANIIT	10	Unmodified	_AEDSSANIIT_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7494201660156	2	510.745836	1019.47712	-1.4446	-0.00073781	2.5919	0.0013238	1.1473	0.00058597	511.2491280467629	30.139	0.28321	30.139	30.017	30.3	0					12	6	3	0	0	0	0.03519	1	1917	1917		39.253	0	1	45455			343	4770	228	229	395	395					-0.03184038278220669
AEEAPQPEP	9	Unmodified	_AEEAPQPEP_					0	0	0			REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF	REV__ENST00000503791.5_1_13:28712996-28748432:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2336730957031	2	484.221997	966.429441	-0.11946	-5.7845E-05	0.30509	0.00014773	0.18563	8.9888E-05	484.222078873125	41.594	0.53172	41.364	41.119	41.651	-0.23029					21	13	2	0	0	0	0.023837	1	3695	3695		30.318	0	1	272800	+		344	33968	229	230	396	396					-0.05511692478421537
AEEARRKGEL	10	Unmodified	_AEEARRKGEL_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.75341796875	2	579.814919	1157.61528	-0.039009	-2.2618E-05	-1.01	-0.00058559	-1.049	-0.00060821	579.8142839719351	74.92	0.21227	74.737	74.555	74.767	-0.18279					6	4	2	0	0	0	0.03519	1	8840	8840		24.519	3.5723	1	49776			345	2368	230	231	397	397					0.042781297609280955
AEEEQKKD	8	Unmodified	_AEEEQKKD_					0	0	0			REV__ENST00000422086.5_2_22:21368251-21368506:-|nuORF	REV__ENST00000422086.5_2_22:21368251-21368506:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2709045410156	2	488.732729	975.450904	0.027255	1.332E-05	1.3171	0.0006437	1.3443	0.00065702	488.733184987883	22.815	0.91849	22.626	22.374	23.292	-0.18894					36	19	3	0	0	0	0.027866	1	866	866		49.442	0	1	452160	+		346	32195	231	232	398	398					-0.037803074497105627
AEEIEVLAAN	10	Unmodified	_AEEIEVLAAN_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.793701171875	2	529.771854	1057.52915	0.026625	1.4105E-05	2.3308	0.0012348	2.3575	0.0012489	529.7725058970522	37.291	0.33999	37.098	36.889	37.229	-0.193					10	8	2	0	0	0	0.03519	1	2960	2960		37.812	22.17	1	57792			347	3585	232	233	399	399					0.002691251355372515
AEEITVGQLI	10	Unmodified	_AEEITVGQLI_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7694702148438	2	536.797872	1071.58119	-0.19278	-0.00010349	0.91424	0.00049076	0.72145	0.00038727	536.798192828096	87.228	1.1339	87.192	86.52	87.654	-0.035355					40	26	2	0	0	0	0.03519	1	10924	10924		112.41	16.596	1	186950			348	1251	233	234	400	400					0.04826288549293167
AEEKTRAFT	9	Unmodified	_AEEKTRAFT_					0	0	0			REV__ENSG00000173376|ENST00000379692|NDNF	REV__ENSG00000173376|ENST00000379692|NDNF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2930297851562	2	526.772188	1051.52982	-0.095408	-5.0258E-05	2.5477	0.0013421	2.4523	0.0012918	526.7742366881542	52.508	0.20145	52.318	52.188	52.389	-0.18981					6	4	2	0	0	0	0.024374	1	5433	5433		49.442	21.559	1	94012	+		349	26769	234	235	401	401					0.006119645752505676
AEELHQRGE	9	Unmodified	_AEELHQRGE_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2706909179688	2	534.757069	1067.49959	-1.2552	-0.00067125	-0.092431	-4.9428E-05	-1.3477	-0.00072068	534.7568626644622	45.928	0.62276	45.726	45.458	46.081	-0.20226					29	16	2	0	0	0	0.024457	1	4431	4431		21.96	4.5949	1	1324600	+		350	26228	235	236	402	402					-0.03146394089935711
AEELHRME	8	Unmodified	_AEELHRME_					0	0	0		nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-2|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3283996582031	2	507.737291	1013.46003	0.28893	0.0001467	-2.6381	-0.0013395	-2.3492	-0.0011928	507.7357439897033	33.414	0.56541	33.47	33.245	33.81	0.056568					24	14	2	0	0	0	0.027866	1	2371	2371		30.504	2.6214	1	240360			351	3154	236	237	403	403					-0.0461623736501906
AEELITPF	8	Unmodified	_AEELITPF_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.24261474609375	2	460.242201	918.469849	0.56459	0.00025985	0.22425	0.00010321	0.78884	0.00036306	460.2421417516996	17.201	0.75616	17.059	16.895	17.651	-0.14278					29	16	3	0	0	0	1.0017	1	132	132		37.028	1.8765	1	470610	+		352	23219	237	238	404	404					0.00735273912005141
AEELQQEP	8	Unmodified	_AEELQQEP_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3;REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2948303222656	2	472.221997	942.429441	0.87104	0.00041133	0.39419	0.00018615	1.2652	0.00059747	472.22219072397064	55.864	1.2993	55.864	54.908	56.207	0					51	36	2	0	0	0	0.027866	1	6082	6082		55.504	0	1	390370	+		353	25558;33731	238	239	405	405					-0.044076924784235416
AEELVGLLDA	10	Unmodified	_AEELVGLLDA_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.758056640625	2	515.276772	1028.53899	0.02857	1.4721E-05	-2.819	-0.0014526	-2.7904	-0.0014378	515.2761541038362	73.772	0.32673	73.582	73.316	73.643	-0.19026					12	7	2	0	0	0	0.03519	1	8673	8673		39.253	0	1	415450			354	8450	239	240	406	406					0.025863131409323614
AEEQARPR	8	Unmodified	_AEEQARPR_					0	0	0		ENST00000601949.5_1_19:41284205-41292865:+|nuORF;ENST00000600078.5_1_19:41284205-41286153:+|nuORF;ENST00000602069.5_1_19:41284205-41289930:+|nuORF	ENST00000601949.5_1_19:41284205-41292865:+|nuORF	ENST00000601949.5_1_19:41284205-41292865:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7591552734375	2	478.749047	955.483542	-0.17417	-8.3384E-05	-1.8376	-0.00087976	-2.0118	-0.00096315	478.7480099272455	23.15	0.41825	23.089	22.889	23.308	-0.060862					13	9	2	0	0	0	0.027866	1	863	863		29.15	0	1	42031			355	17496	240	241	407	407					0.004019444638061032
AEEQQVRVV	9	Unmodified	_AEEQQVRVV_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2745971679688	2	529.285463	1056.55637	-0.46195	-0.0002445	2.0624	0.0010916	1.6004	0.00084707	529.2879831745533	72.912	0.42535	72.647	72.469	72.894	-0.26479					11	9	2	0	0	0	0.02435	1	8565	8565		42.396	0	1	74071			356	850;16288	241	242	408	408					0.030356534665770596
AEESESERPE	10	Unmodified	_AEESESERPE_					0	0	0			REV__ENSG00000218891|ENST00000325421|ZNF579	REV__ENSG00000218891|ENST00000325421|ZNF579	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.2666625976562	2	581.746564	1161.47858	-0.69292	-0.0004031	0.48155	0.00028014	-0.21137	-0.00012296	581.7473159331629	62.159	0.35334	61.901	61.783	62.136	-0.25725					10	8	2	0	0	0	0.03519	1	6961	6961		40.058	0	1	80580	+		357	28825	242	243	409	409					-0.0957044898013919
AEESLPMMP	9	Unmodified	_AEESLPMMP_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.75384521484375	2	502.725003	1003.43545	-0.48762	-0.00024514	0.88288	0.00044384	0.39525	0.0001987	502.7250963905127	31.057	0.70858	30.904	30.597	31.305	-0.15231					40	17	4	0	0	0	0.024517	1	1993	1993		26.796	13.837	1	956860	+		358	20672	243	244	410	410					-0.06612633562758674
AEESLPMMP	9	Unmodified	_AEESLPMMP_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.725003	1003.43545	-0.27164	-0.00013656	0.37316	0.00018759	0.10151	5.1032E-05	502.7250054511142	31.283	0.65395	31.042	30.753	31.407	-0.24109	0.068988	-0.00022284	NaN	33.516	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728290	+		359	20672	243	244							-0.06612633562758674
AEESQIRI	8	Unmodified	_AEESQIRI_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7779235839844	2	473.253631	944.49271	0.2074	9.8154E-05	0.31012	0.00014677	0.51752	0.00024492	473.2534465072235	24.292	1.0107	24.292	23.908	24.919	0					48	22	3	0	0	0	0.027866	1	1050	1050		68.787	5.4806	1	813020			360	4782	244	245	411	411					0.018242930294718462
AEESVSMKS	9	Unmodified	_AEESVSMKS_					0	0	0		AS3MT|p.D354V|1|0.22|ENSG00000214435|chr10:102900633-102900633|A/T|missense_variant	AS3MT|p.D354V|1|0.22|ENSG00000214435|chr10:102900633-102900633|A/T|missense_variant	AS3MT|p.D354V|1|0.22|ENSG00000214435|chr10:102900633-102900633|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.23394775390625	2	484.223682	966.432811	-0.35013	-0.00016954	-2.8193	-0.0013652	-3.1694	-0.0015347	484.2221893107455	41.624	0.46494	41.396	41.197	41.662	-0.2278					17	11	2	0	0	0	0.023655	1	3702	3702		51.193	3.5354	1	254900			361	136	245	246	412	412					-0.051747656960628774
AEETIHTGSVN	11	Unmodified	_AEETIHTGSVN_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.3038330078125	2	579.275292	1156.53603	-0.38935	-0.00022554	2.7633	0.0016007	2.374	0.0013752	579.2769769074386	65.475	0.57241	65.233	64.842	65.414	-0.24144					21	13	2	0	0	0	0.024774	1	7442	7442		17.468	0.10304	1	135160			362	1082	246	247	413	413					-0.03597561983883679
AEEVKREL	8	Unmodified	_AEEVKREL_					0	0	0		nc|ENSG00000173852|Q2PZI1-2|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1	nc|ENSG00000173852|Q2PZI1-2|DPY19L1	nc|ENSG00000173852|Q2PZI1-2|DPY19L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2349548339844	2	487.269281	972.52401	-0.5556	-0.00027073	-0.26704	-0.00013012	-0.82264	-0.00040085	487.269015627666	47.933	0.3341	47.835	47.705	48.039	-0.097553					12	8	2	0	0	0	0.027866	1	4738	4738		30.504	0	1	159780			363	8418	247	248	414	414					0.03664866063570571
AEEVLLLAR	9	Unmodified	_AEEVLLLAR_					0	0	0		ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.301513671875	2	507.303124	1012.5917	-1.1433	-0.00058002	0.87213	0.00044244	-0.27122	-0.00013759	507.3031832328219	55.752	0.40741	55.537	55.301	55.709	-0.21551					16	10	2	0	0	0	0.024381	1	6001	6001		37.159	0	1	169880			364	6926	248	249	415	415					0.08590315994376851
AEEYMTQV	8	Unmodified	_AEEYMTQV_					0	0	0			REV__nc|ENSG00000134198|O60636-2|TSPAN2	REV__nc|ENSG00000134198|O60636-2|TSPAN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2794189453125	2	485.71295	969.411348	-0.19828	-9.6309E-05	3.8652	0.0018774	3.6669	0.0017811	485.7146847327337	52.43	1.7636	52.283	50.725	52.488	-0.14723					72	48	2	0	0	0	0.027866	1	5392	5392		21.96	0	1	343340	+		365	23425	249	250	416	416					-0.07458150724767165
AEFEKRLR	8	Unmodified	_AEFEKRLR_					0	0	0			REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.7984008789062	2	524.79854	1047.58253	0.18321	9.615E-05	-0.18083	-9.4899E-05	0.0023838	1.251E-06	524.7982674994387	21.906	0.5723	21.724	21.49	22.062	-0.18144					33	11	4	0	0	0	0.95679	1	734	734		44.117	0	1	306200	+		366	19256	250	251	417	417					0.060639674286903755
AEFEKRLR	8	Unmodified	_AEFEKRLR_					0	0	0			REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	524.79854	1047.58253	0.18321	9.615E-05	-0.18083	-9.4899E-05	0.0023838	1.251E-06	524.7982674994387	21.906	0.5723	21.724	21.49	22.062	-0.18144	-0.081241	-0.0004404	NaN	44.117	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306200	+		367	19256	250	251							0.060639674286903755
AEFEKRLR	8	Unmodified	_AEFEKRLR_					0	0	0			REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.79854	1047.58253	-0.41807	-0.0002194	0.39866	0.00020922	-0.019412	-1.0187E-05	524.7985067442233	22.073	0.5685	21.883	21.662	22.231	-0.19007	0.077748	0.00016783	NaN	44.117	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248670	+		368	19256	250	251							0.060639674286903755
AEFEKRLR	8	Unmodified	_AEFEKRLR_					0	0	0			REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	REV__CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.79854	1047.58253	-0.43447	-0.00022801	0.54275	0.00028483	0.10828	5.6828E-05	524.798716141282	22.011	0.6271	21.809	21.421	22.048	-0.20198	0.0034927	0.00031906	NaN	44.117	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220420	+		369	19256	250	251							0.060639674286903755
AEFFCVRVI	9	Unmodified	_AEFFCVRVI_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.2847900390625	2	542.28642	1082.55829	-0.0074987	-4.0664E-06	0.1018	5.5203E-05	0.094298	5.1137E-05	542.2865415579464	71.815	0.80448	71.553	71.2	72.004	-0.26199					32	19	2	0	0	0	0.75397	1	8409	8409		42.396	3.1433	1	669840	+		370	19208	251	252	418	418					0.020309909508114288
AEFFCVRVI	9	Unmodified	_AEFFCVRVI_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.28642	1082.55829	-0.06919	-3.7521E-05	-0.14825	-8.0392E-05	-0.21744	-0.00011791	542.2863075135322	71.624	0.63936	71.624	71.377	72.017	0	0.01482	-0.00025987	NaN	42.396	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567570	+		371	19208	251	252							0.020309909508114288
AEFFCVRVI	9	Unmodified	_AEFFCVRVI_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.28642	1082.55829	-0.35428	-0.00019212	0.081683	4.4295E-05	-0.2726	-0.00014783	542.28645440861	71.787	0.73571	71.797	71.433	72.169	0.0097733	0.18748	-1.0497E-05	NaN	42.396	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485770	+		372	19208	251	252							0.020309909508114288
AEFFCVRVI	9	Unmodified	_AEFFCVRVI_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.28642	1082.55829	-0.14218	-7.7104E-05	0.18327	9.9384E-05	0.041086	2.228E-05	542.2864755840528	71.843	0.59598	71.568	71.314	71.91	-0.27509	-0.041466	9.968E-05	NaN	42.396	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	694960	+		373	19208	251	252							0.020309909508114288
AEFFCVRVI	9	Unmodified	_AEFFCVRVI_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	542.28642	1082.55829	-0.0074987	-4.0664E-06	0.1018	5.5203E-05	0.094298	5.1137E-05	542.2865415579464	71.815	0.80448	71.553	71.2	72.004	-0.26199	-0.057073	1.1318E-05	NaN	42.396	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669840	+		374	19208	251	252							0.020309909508114288
AEFFCVRVI	9	Unmodified	_AEFFCVRVI_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.28642	1082.55829	-0.4665	-0.00025297	0.4696	0.00025466	0.0031021	1.6822E-06	542.2866980871008	71.712	0.71651	71.506	71.225	71.941	-0.20613	-0.10376	0.00041023	NaN	42.396	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610700	+		375	19208	251	252							0.020309909508114288
AEFFYQVL	8	Unmodified	_AEFFYQVL_					0	0	0		ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7720642089844	2	508.758018	1015.50148	-0.42492	-0.00021618	-3.0683	-0.001561	-3.4932	-0.0017772	508.75586392327523	33.761	0.34637	33.757	33.523	33.869	-0.0045624					9	8	2	0	0	0	0.027866	1	2456	2456		60.294	0	1	33232			376	5299	252	253	419	419					-0.005647333340562
AEFLLLPI	8	Unmodified	_AEFLLLPI_					0	0	0		ENST00000484109.1_1_13:95695845-95696557:-|nuORF	ENST00000484109.1_1_13:95695845-95696557:-|nuORF	ENST00000484109.1_1_13:95695845-95696557:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.7998046875	2	458.281129	914.547705	-0.17388	-7.9687E-05	-2.785	-0.0012763	-2.9589	-0.001356	458.279934711737	73.16	0.3819	72.883	72.669	73.051	-0.2769					12	8	2	0	0	0	0.027866	1	8562	8562		54.765	0	1	38416			377	15294	253	254	420	420					0.08701331568033766
AEFLRHII	8	Unmodified	_AEFLRHII_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3;REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.791015625	2	499.792727	997.5709	-0.46746	-0.00023364	-4.0213	-0.0020098	-4.4888	-0.0022434	499.7906557352374	29.635	0.96934	29.485	29.129	30.099	-0.14952					45	22	4	0	0	0	0.97924	1	1821	1821		40.573	3.4135	1	4404700	+		378	21513;34294	254	255	421	421					0.07201770405367824
AEFNWALF	8	Unmodified	_AEFNWALF_					0	0	0			REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77740478515625	2	499.242535	996.470518	-0.72987	-0.00036438	-4.1406	-0.0020672	-4.8705	-0.0024316	499.24037842055424	27.022	0.38862	26.865	26.715	27.104	-0.15664					15	8	2	0	0	0	0.027866	1	1417	1417		47.916	10.756	1	62474	+		379	21757	255	256	422	422					-0.0278588664829158
AEFNWALF	8	Unmodified	_AEFNWALF_					0	0	0			REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.242535	996.470518	-0.49324	-0.00024625	-3.2371	-0.0016161	-3.7303	-0.0018623	499.24043436797626	27.161	0.46194	26.918	26.701	27.163	-0.24217	0.075575	0.00085484	NaN	47.916	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73143	+		380	21757	255	256							-0.0278588664829158
AEFNWALF	8	Unmodified	_AEFNWALF_					0	0	0			REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.242535	996.470518	-0.40413	-0.00020176	-4.8558	-0.0024242	-5.2599	-0.002626	499.23987397817956	26.913	0.37572	26.745	26.638	27.013	-0.16816	-0.097891	-0.00076144	NaN	47.916	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57640	+		381	21757	255	256							-0.0278588664829158
AEGAAVSIPGL	11	Unmodified	_AEGAAVSIPGL_					0	0	0			REV__ENST00000490500.5_3_1:33117091-33117256:+|nuORF	REV__ENST00000490500.5_3_1:33117091-33117256:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2875671386719	2	492.771657	983.528761	-0.33146	-0.00016333	-0.61499	-0.00030305	-0.94645	-0.00046639	492.77067315239293	22.036	0.24024	22.036	21.819	22.06	0					7	4	2	0	0	0	0.024741	1	737	737		30.318	3.5216	1	19328	+		382	33702	256	257	423	423					0.036337502063247484
AEGAVGIVLPD	11	Unmodified	_AEGAVGIVLPD_					0	0	0		ENST00000234875.8_1_1:6245974-6246061:-|nuORF	ENST00000234875.8_1_1:6245974-6246061:-|nuORF	ENST00000234875.8_1_1:6245974-6246061:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.78466796875	2	520.784764	1039.55498	-0.17121	-8.9164E-05	-0.92176	-0.00048004	-1.093	-0.0005692	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	1.018	1	13650	13650		32.812	3.6629	1	7199700			383	11253	257	258	424	424					0.036780193777985914
AEGAVWSRL	9	Unmodified	_AEGAVWSRL_					0	0	0			REV__ENST00000354124.7_2_17:77045413-77045737:+|nuORF	REV__ENST00000354124.7_2_17:77045413-77045737:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2533264160156	2	494.764166	987.513779	0.31047	0.00015361	4.0757	0.0020165	4.3861	0.0021701	494.7659709918652	57.046	0.29264	56.844	56.633	56.926	-0.20209					9	7	2	0	0	0	0.024427	1	6216	6216		42.396	11.892	1	128220	+		384	30748	258	259	425	425					0.019523031289850223
AEGDRWAI	8	Unmodified	_AEGDRWAI_					0	0	0			REV__ENST00000554581.5_1_14:105236164-105236665:-|nuORF	REV__ENST00000554581.5_1_14:105236164-105236665:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2293395996094	2	459.227417	916.44028	-0.33196	-0.00015244	4.3864	0.0020143	4.0544	0.0018619	459.2293382268946	30.34	3.8425	30.415	28.975	32.817	0.074316					201	95	4	0	0	0	0.77775	1	1897	1897		60.972	8.6728	1	1378400	+		385	34994	259	260	426	426					-0.021282453134745083
AEGEDPGCAN	10	Unmodified	_AEGEDPGCAN_					0	0	0		ENST00000568570.1_1_16:31993258-32005419:+|nuORF;nc|ENSG00000275832|Q9P227-2|ARHGAP23;ENSG00000275832|ENST00000622683|ARHGAP23	ENST00000568570.1_1_16:31993258-32005419:+|nuORF	ENST00000568570.1_1_16:31993258-32005419:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.7325439453125	2	481.679639	961.344725	0.47125	0.00022699	-4.3487	-0.0020947	-3.8774	-0.0018677	481.67586784019255	57.344	0.15646	57.169	57.111	57.268	-0.1749					5	3	2	0	0	0	0.03519	1	6409	6409		31.53	0	1	53357			386	16986	260	261	427	427					-0.13749386286690424
AEGEKHLIY	9	Unmodified	_AEGEKHLIY_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2766723632812	2	530.277106	1058.53966	-0.40857	-0.00021665	-0.050599	-2.6831E-05	-0.45917	-0.00024349	530.2771636805379	58.789	1.1291	58.601	58.136	59.265	-0.18795					85	27	4	0	0	0	0.31247	1	6491	6491		73.975	8.1716	1	15538000	+		387	24543	261	262	428	428					0.01273152580643
AEGEKHLIY	9	Unmodified	_AEGEKHLIY_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2772827148438	2	530.277106	1058.53966	0.59699	0.00031657	-1.188	-0.00062999	-0.59106	-0.00031342	530.2766320210427	58.835	1.0862	58.593	58.173	59.259	-0.24165					81	26	5	0	0	0	0.15889	1	6450	6450		97.473	12.557	1	15720000	+		388	24543	261	262	429	429					0.01273152580643
AEGGFAIVFLV	11	Unmodified	_AEGGFAIVFLV_					0	0	0		ENSG00000115977|ENST00000409085|AAK1;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENST00000495836.1_1_2:69771529-69870271:-|nuORF	ENSG00000115977|ENST00000409085|AAK1	ENSG00000115977|ENST00000409085|AAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.279296875	2	561.813325	1121.6121	0.80094	0.00044998	-4.4115	-0.0024784	-3.6105	-0.0020284	561.807620643844	84.962	0.57462	84.803	84.53	85.105	-0.15869					26	12	3	0	0	0	0.024743	1	10323	10323		35.618	0	1	156750			389	3506	262	263	430	430					0.05615486654187407
AEGGQRRSP	9	Unmodified	_AEGGQRRSP_					0	0	0			REV__ENST00000368491.7_2_6:118972893-118973046:-|nuORF	REV__ENST00000368491.7_2_6:118972893-118973046:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2458190917969	2	479.246672	956.478791	-0.87008	-0.00041698	2.6955	0.0012918	1.8255	0.00087484	479.2478681761334	51.541	0.68136	51.264	50.967	51.648	-0.27643					38	17	4	0	0	0	0.71548	1	5293	5293		45.022	2.1579	1	1732100	+		390	31054	263	264	431	431					-0.0011893967895275637
AEGKLWVACY	10	Unmodified	_AEGKLWVACY_					0	0	0		nc|ENSG00000130988|Q15493-2|RGN;ENSG00000130988|ENST00000397180|RGN	nc|ENSG00000130988|Q15493-2|RGN	nc|ENSG00000130988|Q15493-2|RGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2731323242188	2	570.281334	1138.54812	0.7974	0.00045474	-3.6308	-0.0020706	-2.8334	-0.0016158	570.2787671161972	86.208	0.52168	86.066	85.625	86.147	-0.14217					15	11	2	0	0	0	0.03519	1	10465	10465		42.396	9.5837	1	42472			391	4482	264	265	432	432					-0.015616167744155973
AEGLHLYIV	9	Unmodified	_AEGLHLYIV_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.78460693359375	2	507.784567	1013.55458	0.2616	0.00013284	-0.41506	-0.00021076	-0.15345	-7.7922E-05	507.78429261693026	72.74	1.1878	72.749	72.331	73.519	0.0096512					69	29	4	0	0	0	0.26797	1	8786	8786		79.939	0	1	4612600			392	4293	265	266	433	433					0.04834644448612835
AEGLTLAQV	9	Unmodified	_AEGLTLAQV_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.25311279296875	2	451.2531	900.491647	0.093369	4.2133E-05	0.072053	3.2514E-05	0.16542	7.4647E-05	451.2530147971711	64.554	0.77608	64.554	64.168	64.944	0					47	20	3	0	0	0	0.091713	2	7608	7597;7608		113.41	20.216	1	2578200			393	5433	266	267	434;435	435					0.03742078660570769
AEGLTLAQV	9	Unmodified	_AEGLTLAQV_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2533264160156	2	451.2531	900.491647	-0.95113	-0.0004292	1.2574	0.00056739	0.30623	0.00013819	451.2534946454471	64.815	0.7961	64.552	64.193	64.989	-0.2626					46	20	3	0	0	0	0.096521	1	7608	7608		111.65	20.872	1	2510500			394	5433	266	267	436	436					0.03742078660570769
AEGLTLAQV	9	Unmodified	_AEGLTLAQV_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2533874511719	2	451.2531	900.491647	-0.044786	-2.021E-05	0.41791	0.00018858	0.37312	0.00016837	451.2531080074179	64.535	0.82821	64.58	64.225	65.053	0.045509					48	21	3	0	0	0	0.06122	2	7508	7508;7518		124.59	14.474	1	2846200			395	5433	266	267	437;438	437					0.03742078660570769
AEGLTLAQV	9	Unmodified	_AEGLTLAQV_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.2531	900.491647	-0.24046	-0.00010851	1.0074	0.00045459	0.76693	0.00034608	451.2531970641773	64.879	0.55748	64.645	64.413	64.971	-0.2345	0.028711	0.00029184	NaN	124.59	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408750			396	5433	266	267							0.03742078660570769
AEGLTLAQV	9	Unmodified	_AEGLTLAQV_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.2531	900.491647	-0.82311	-0.00037143	0.99707	0.00044993	0.17396	7.85E-05	451.25356386849717	64.877	0.80547	64.675	64.461	65.266	-0.20254	0.058464	0.00028253	NaN	124.59	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474380			397	5433	266	267							0.03742078660570769
AEGLTLAQV	9	Unmodified	_AEGLTLAQV_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.2531	900.491647	-0.52505	-0.00023693	1.0221	0.00046125	0.49709	0.00022431	451.2534815130333	64.947	0.63614	64.691	64.386	65.022	-0.25563	0.074885	0.00030516	NaN	124.59	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487060			398	5433	266	267							0.03742078660570769
AEGNLYGLLD	10	Unmodified	_AEGNLYGLLD_					0	0	0			REV__ENSG00000134371|ENST00000367435|CDC73	REV__ENSG00000134371|ENST00000367435|CDC73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	532.766571	1063.51859	0.16271	8.6689E-05	-0.58142	-0.00030976	-0.4187	-0.00022307	532.7630171307425	87.015	0.92206	87.036	86.719	87.641	0.021263					46	21	3	0	0	0	0.03519	1	10877	10877		49.442	10.635	1	798460	+		399	23447	267	268	439	439					-0.010628575189002731
AEGQAKSLKT	10	Unmodified	_AEGQAKSLKT_					0	0	0		ENSG00000205078|ENST00000378644|SYCE1L	ENSG00000205078|ENST00000378644|SYCE1L	ENSG00000205078|ENST00000378644|SYCE1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2764892578125	2	516.787838	1031.56112	-0.18326	-9.4706E-05	3.9082	0.0020197	3.725	0.001925	516.7897165018838	89.087	0.71613	89.102	88.795	89.511	0.015907					37	16	3	0	0	0	0.03519	1	11143	11143		44.377	12.847	1	616070			400	10402	268	269	440	440					0.046605376093339146
AEGRAASECPE	11	Unmodified	_AEGRAASECPE_					0	0	0		ENST00000608354.1_1_22:30642226-30642904:+|nuORF	ENST00000608354.1_1_22:30642226-30642904:+|nuORF	ENST00000608354.1_1_22:30642226-30642904:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.2714233398438	2	560.240395	1118.46624	-0.68328	-0.0003828	-4.2091	-0.0023581	-4.8924	-0.0027409	560.2379779970437	93.233	0.42097	93.229	93.074	93.495	-0.0042038					12	9	2	0	0	0	0.023443	1	11842	11842		96.034	16.583	1	97775			401	17591	269	270	441	441					-0.08825763924164676
AEGRAVYV	8	Unmodified	_AEGRAVYV_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.73193359375	2	432.732335	863.450116	0.26426	0.00011436	-1.3347	-0.00057759	-1.0705	-0.00046323	432.731609240746	98.399	2.1324	98.399	97.814	99.946	0					148	49	4	0	0	0	0.91239	2	12579	12579;12605		50.025	4.0726	1	3598600			402	10223	270	271	442;443	442					0.012929426918958598
AEGRAVYV	8	Unmodified	_AEGRAVYV_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7320556640625	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	1.0106	2	12505	12505;12531		35.618	1.5607	1	3615900			403	10223	270	271	444;445	444					0.012929426918958598
AEGRAVYV	8	Unmodified	_AEGRAVYV_					0	0	0		ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	ENSG00000198841|ENST00000371614|KTI12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7318420410156	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	0.99042	1	12270	12270		38.806	1.647	1	2327700			404	10223	270	271	446	446					0.012929426918958598
AEGRELQAI	9	Unmodified	_AEGRELQAI_					0	0	0			REV__ENSG00000181666|ENST00000392153|ZNF875	REV__ENSG00000181666|ENST00000392153|ZNF875	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7855224609375	2	493.766906	985.519259	-0.11592	-5.7239E-05	3.1131	0.0015372	2.9972	0.0014799	493.7668921690282	47.668	0.28373	47.668	47.464	47.748	0					13	8	2	0	0	0	0.02435	1	4790	4790		42.396	1.618	1	158920	+		405	27417	271	272	447	447					0.025919819208070294
AEGRHLRLHQ	10	Unmodified	_AEGRHLRLHQ_					0	0	0			REV__ENSG00000167625|ENST00000301215|ZNF526	REV__ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8366088867188	2	608.83652	1215.65849	-0.10849	-6.605E-05	0.87729	0.00053413	0.76881	0.00046808	608.837007262788	109.69	0.40428	109.68	109.51	109.92	-0.0094986					54	19	4	0	0	0	1.1088	1	13886	13886		31.53	1.2121	1	4069800	+		406	26168	272	273	448	448					0.05928364328838143
AEGRLAKEL	9	Unmodified	_AEGRLAKEL_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7850341796875	2	493.785099	985.555644	-0.91072	-0.0004497	0.34235	0.00016905	-0.56837	-0.00028065	493.78525756043325	47.479	1.8335	47.538	47.247	49.081	0.059097					113	52	6	0	0	0	0.14181	1	4693	4693		101.25	5.4375	1	16791000	+		407	36675	273	274	449	449					0.062288588175078985
AEGVSLPR	8	Unmodified	_AEGVSLPR_					0	0	0		nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2;ENST00000588021.5_1_19:6007990-6026242:-|nuORF;nc|ENSG00000080298|P48380-3|RFX3;ENST00000589239.5_1_19:14080804-14104655:-|nuORF;nc|ENSG00000080298|P48380-2|RFX3;ENSG00000080298|ENST00000617270|RFX3;ENSG00000132005|ENST00000254325|RFX1	nc|ENSG00000087903|P48378-2|RFX2	nc|ENSG00000087903|P48378-2|RFX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2145080566406	2	414.732335	827.450116	0.27954	0.00011593	0.41141	0.00017062	0.69095	0.00028656	414.732442529596	24.32	0.68184	24.398	24.003	24.685	0.078344					22	14	2	0	0	0	0.027866	1	1007	1007		35.618	7.364	1	197920			408	1857	274	275	450	450					0.029489426918985373
AEGYREKLV	9	Unmodified	_AEGYREKLV_					0	0	0		ENST00000556578.1_1_14:73739525-73739606:-|nuORF	ENST00000556578.1_1_14:73739525-73739606:-|nuORF	ENST00000556578.1_1_14:73739525-73739606:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2716674804688	2	532.790381	1063.56621	-0.24728	-0.00013175	-0.37157	-0.00019797	-0.61885	-0.00032972	532.7900741706396	55.066	0.70477	55.066	54.831	55.536	0					31	19	2	0	0	0	0.024436	1	6121	6121		23.042	1.0826	1	1069700			409	16715	275	276	451	451					0.036968414719467546
AEGYREKLV	9	Unmodified	_AEGYREKLV_					0	0	0		ENST00000556578.1_1_14:73739525-73739606:-|nuORF	ENST00000556578.1_1_14:73739525-73739606:-|nuORF	ENST00000556578.1_1_14:73739525-73739606:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.790381	1063.56621	-0.53893	-0.00028714	-0.38324	-0.00020419	-0.92217	-0.00049133	532.7902808571547	55.162	0.48395	55.012	54.782	55.266	-0.15036	0.0085469	4.0709E-05	NaN	23.042	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266200			410	16715	275	276							0.036968414719467546
AEHHLLTPL	9	Unmodified	_AEHHLLTPL_					0	0	0			REV__ENST00000378536.4_1_1:2238773-2238983:+|nuORF	REV__ENST00000378536.4_1_1:2238773-2238983:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8097534179688	2	515.787641	1029.56073	-1.0457	-0.00053936	-1.3567	-0.00069975	-2.4024	-0.0012391	515.7867646546306	43.459	0.57869	43.459	43.186	43.765	0					27	15	2	0	0	0	0.024541	1	4066	4066		11.511	3.2797	1	153080	+		411	31405	276	277	452	452					0.04713162680127425
AEHILAHLL	9	Unmodified	_AEHILAHLL_					0	0	0			REV__nc|ENSG00000230301|Q8NGV6|OR5H6	REV__nc|ENSG00000230301|Q8NGV6|OR5H6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.796142578125	2	508.798009	1015.58147	0.36768	0.00018708	-4.3679	-0.0022224	-4.0002	-0.0020353	508.79572781930943	102.57	0.85091	102.44	101.9	102.75	-0.12931					31	19	3	0	0	0	0.92825	1	12732	12732		30.504	2.6214	1	300190	+		412	28892	277	278	453	453					0.07429753059784616
AEHLCLKLP	9	Unmodified	_AEHLCLKLP_					0	0	0		ENST00000543562.1_1_11:69489970-69490117:-|nuORF	ENST00000543562.1_1_11:69489970-69490117:-|nuORF	ENST00000543562.1_1_11:69489970-69490117:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.774169921875	2	512.28642	1022.55829	-0.86051	-0.00044083	0.36503	0.000187	-0.49548	-0.00025383	512.286488467671	45.951	0.76601	45.748	45.391	46.157	-0.20226					49	20	3	0	0	0	0.024262	1	4332	4332		47.916	0	1	834960			413	16468	278	279	454	454					0.047909909508234705
AEHLRRIRA	9	Unmodified	_AEHLRRIRA_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.8358154296875	2	561.336156	1120.65776	-0.65662	-0.00036859	-1.0979	-0.00061626	-1.7545	-0.00098485	561.3351380858587	104.95	0.35066	104.82	104.6	104.95	-0.13099					25	11	3	0	0	0	0.91321	1	13060	13060		31.53	0	1	99643			414	7670	279	280	455	455					0.10225569679778346
AEHQNLTAY	9	Unmodified	_AEHQNLTAY_					0	0	0		nc|ENSG00000141956|P57071-5|PRDM15;PRDM15|p.T1394Yfs*4|1|0.33|ENSG00000141956|chr21:41801584-41801585|-/A|frameshift_variant;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.7503662109375	2	523.748713	1045.48287	-0.5027	-0.00026329	0.98372	0.00051522	0.48102	0.00025193	523.7492090444878	39.571	1.0202	39.407	39.081	40.101	-0.16458					67	26	4	0	0	0	0.74711	1	3372	3372		42.864	2.2917	1	3181000			415	5528	280	281	456	456					-0.038048949759058814
AEHQNLTAY	9	Unmodified	_AEHQNLTAY_					0	0	0		nc|ENSG00000141956|P57071-5|PRDM15;PRDM15|p.T1394Yfs*4|1|0.33|ENSG00000141956|chr21:41801584-41801585|-/A|frameshift_variant;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.748713	1045.48287	-0.8584	-0.00044959	1.1193	0.00058625	0.26093	0.00013666	523.7493149332671	39.64	0.60429	39.664	39.17	39.775	0.023727	0.15524	0.00041494	NaN	42.864	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80060			416	5528	280	281							-0.038048949759058814
AEHQNLTAY	9	Unmodified	_AEHQNLTAY_					0	0	0		nc|ENSG00000141956|P57071-5|PRDM15;PRDM15|p.T1394Yfs*4|1|0.33|ENSG00000141956|chr21:41801584-41801585|-/A|frameshift_variant;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	523.748713	1045.48287	0.013411	7.0242E-06	0.42147	0.00022074	0.43488	0.00022777	523.7489043412066	39.705	0.91851	39.475	39.128	40.046	-0.23021	-0.033834	-0.00031606	NaN	42.864	74	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2871300			417	5528	280	281							-0.038048949759058814
AEHSLRLDI	9	Unmodified	_AEHSLRLDI_					0	0	0			REV__ENSG00000110090|ENST00000265641|CPT1A	REV__ENSG00000110090|ENST00000265641|CPT1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.27294921875	2	527.288005	1052.56146	1.1517	0.00060728	4.2429	0.0022372	5.3946	0.0028445	527.7920256766064	59	0.8681	58.813	58.538	59.406	-0.18705					59	23	4	0	0	0	0.024292	1	6668	6668		40.778	0	1	581550	+		418	21839	281	282	457	457					0.0372795732916984
AEIDILKK	8	Unmodified	_AEIDILKK_					0	0	0			REV__ENST00000469840.1_1_2:201399891-201407862:+|nuORF;REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2864685058594	2	465.286943	928.559333	0.91711	0.00042672	-1.445	-0.00067235	-0.52792	-0.00024563	465.2864021780938	75.372	1.8424	75.382	74.973	76.815	0.010376					162	47	6	0	0	0	0.36844	1	9161	9161		101.6	3.0187	1	105790000	+		419	25587;33137	282	283	458	458					0.09219528591370363
AEIGLTFLP	9	Unmodified	_AEIGLTFLP_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.9790954589844	2	480.773668	959.532783	1.0728	0.00051576	-0.28402	-0.00013655	0.78875	0.00037921	480.773204518506	18.742	0.29689	18.586	18.445	18.742	-0.15637					9	5	2	0	0	0	0.024506	1	350	350		38.806	7.2273	1	25139	+		420	22872	283	284	459	459					0.05139839700041193
AEIGLTFLP	9	Unmodified	_AEIGLTFLP_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.773668	959.532783	0.27208	0.00013081	0.60807	0.00029234	0.88014	0.00042315	480.7736256150227	18.776	0.34665	18.573	18.411	18.757	-0.20371	-0.0065216	0.00040317	NaN	38.806	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36601	+		421	22872	283	284							0.05139839700041193
AEIKNINPEEM	11	Unmodified	_AEIKNINPEEM_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.2298889160156	3	429.879827	1286.61765	-0.52482	-0.00022561	-1.0553	-0.00045363	-1.5801	-0.00067924	430.2139088778623	27.776	0.53083	27.608	27.317	27.847	-0.16816					19	12	2	0	0	0	0.024735	1	1549	1549		27.644	7.3289	1	167940	+		422	26717	284	285	460	460					-0.014192026163073024
AEINKLNEL	9	Unmodified	_AEINKLNEL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.2900390625	2	522.290214	1042.56587	-0.84995	-0.00044392	1.6916	0.00088348	0.8416	0.00043956	522.290386490559	56.924	0.96044	56.924	56.643	57.603	0					59	26	3	0	0	0	0.37611	1	6365	6365		67.494	2.0283	1	15461000			423	4961	285	286	461	461					0.04629421752088092
AEINMALLL	9	Unmodified	_AEINMALLL_					0	0	0		ENST00000373795.6_1_1:29485887-29486910:-|nuORF	ENST00000373795.6_1_1:29485887-29486910:-|nuORF	ENST00000373795.6_1_1:29485887-29486910:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	494.2810363769531	2	494.280803	986.547053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.234	1	70.247	69.747	70.747	0.012421								0	0	0	0.32793	1	8403	8403		66.429	0	1				424	13092	286	287	462	462					0.05324168856691358
AEIPASVRDD	10	Unmodified	_AEIPASVRDD_					0	0	0		nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7794189453125	2	536.767103	1071.51965	-0.34629	-0.00018587	-0.5946	-0.00031916	-0.94089	-0.00050504	537.2663794646942	63.674	0.37312	63.446	63.212	63.585	-0.22773					16	9	2	0	0	0	0.03519	1	7177	7177		58.23	11.463	1	299530			425	18789	287	288	463	463					-0.013246431499965183
AEIPYDVQY	9	Unmodified	_AEIPYDVQY_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7725830078125	2	549.261122	1096.50769	-0.8356	-0.00045897	-0.86856	-0.00047706	-1.7042	-0.00093603	549.2607759389283	35.931	0.66277	35.726	35.428	36.091	-0.20518					26	18	2	0	0	0	0.024477	1	2723	2723		35.618	7.736	1	368420			426	10923	288	289	464	464					-0.03670259893192451
AEIRLSYNP	9	Unmodified	_AEIRLSYNP_					0	0	0			REV__ENSG00000137460|ENST00000511601|FHDC1	REV__ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7763061523438	2	531.782556	1061.55056	-1.1863	-0.00063087	4.1675	0.0022162	2.9812	0.0015853	531.7839679851303	83.335	0.59737	83.335	82.965	83.562	0					29	13	4	0	0	0	0.024477	1	10372	10372		20.947	0	1	466290	+		427	23754	289	290	465	465					0.022245549549097632
AEISGSWRDV	10	Unmodified	_AEISGSWRDV_					0	0	0			REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8314208984375	2	560.275095	1118.53564	-0.35589	-0.0001994	-3.3173	-0.0018586	-3.6732	-0.002058	560.2729368648532	78.373	0.95237	78.389	78.073	79.026	0.015907					36	22	2	0	0	0	0.03519	1	9685	9685		13.454	3.7484	1	155850	+		428	28799	290	291	466	466					-0.018889369131102285
AEKGPTRNAL	10	Unmodified	_AEKGPTRNAL_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7937622070312	2	528.793455	1055.57236	0.12853	6.7964E-05	0.042695	2.2577E-05	0.17122	9.054E-05	528.7933119970511	37.186	0.8544	36.977	36.726	37.58	-0.2092					50	21	4	0	0	0	0.67706	1	2964	2964		68.787	1.2932	1	1931400	+		429	25992	291	292	467	467					0.046793597034593404
AEKKEVAALAP	11	Unmodified	_AEKKEVAALAP_					0	0	0			REV__ENSG00000232125|ENST00000452335|DYTN	REV__ENSG00000232125|ENST00000452335|DYTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.2764282226562	2	563.826963	1125.63937	0.16297	9.1886E-05	-2.615	-0.0014744	-2.4521	-0.0013825	563.8251447910586	82.33	0.56168	82.149	81.856	82.418	-0.18079					22	12	2	0	0	0	0.024747	1	9900	9900		24.519	0	1	127500	+		430	28901	292	293	468	468					0.08157970194565678
AEKKPDVMDKY	11	Unmodified	_AEKKPDVMDKY_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.893310546875	3	441.891956	1322.65404	-0.13423	-5.9317E-05	3.1439	0.0013893	3.0097	0.00133	441.893298701237	34.968	0.62101	34.781	34.519	35.14	-0.18675					53	15	5	0	0	0	0.94699	1	2597	2597		48.602	1.3739	1	2227500	+		431	29153	293	294	469	469					0.005616742804022579
AEKKPQVPQ	9	Unmodified	_AEKKPQVPQ_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.789794921875	2	512.792924	1023.57129	-0.94622	-0.00048521	0.8598	0.0004409	-0.086416	-4.4314E-05	512.7931699142532	21.682	0.77057	21.682	21.097	21.868	0					27	15	2	0	0	0	0.023837	1	714	714		64.207	12.872	1	46679	+		432	24526	294	295	470	470					0.0604514533456495
AEKKPQVPQ	9	Unmodified	_AEKKPQVPQ_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.792924	1023.57129	-1.0103	-0.0005181	0.5675	0.00029101	-0.44285	-0.00022709	512.7930831471626	21.694	0.38679	21.481	21.266	21.652	-0.2128	-0.10038	-0.00027364	NaN	64.207	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11455	+		433	24526	294	295							0.0604514533456495
AEKQLFHW	8	Unmodified	_AEKQLFHW_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7937622070312	2	529.774534	1057.53451	0.10352	5.4843E-05	-3.4384	-0.0018216	-3.3349	-0.0017667	529.7724211428457	37.181	0.34715	36.972	36.806	37.153	-0.2092					15	8	2	0	0	0	0.027866	1	2964	2964		42.474	6.8562	1	66201	+		434	26810	295	296	471	471					0.00804893508643545
AEKRGSTSM	9	Unmodified	_AEKRGSTSM_					0	0	0			REV__ENST00000439362.5_1_2:111991208-112005784:-|nuORF	REV__ENST00000439362.5_1_2:111991208-112005784:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.29266357421875	2	483.737291	965.460029	-1.1908	-0.00057604	4.2178	0.0020403	3.027	0.0014643	483.7394324300113	55.511	0.33472	55.609	55.447	55.782	0.098015					11	8	2	0	0	0	0.024457	1	6036	6036		37.159	2.9866	1	82292	+		435	32508	296	297	472	472					-0.024082373650230693
AEKSAILGL	9	Unmodified	_AEKSAILGL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2720947265625	2	451.271293	900.528032	0.32681	0.00014748	-0.14994	-6.7663E-05	0.17687	7.9818E-05	451.2710921798711	56.887	0.72376	56.662	56.347	57.07	-0.2248					43	18	3	0	0	0	0.072054	1	6175	6175		120.62	5.1269	1	1328600			436	4060	297	298	473	473					0.07378955557271638
AEKSAILGL	9	Unmodified	_AEKSAILGL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.271293	900.528032	0.01265	5.7085E-06	0.12778	5.7664E-05	0.14043	6.3373E-05	451.27123506169585	56.659	0.99406	56.659	56.351	57.345	0	0.035432	3.7308E-05	NaN	120.62	68	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2940700			437	4060	297	298							0.07378955557271638
AEKSAILGL	9	Unmodified	_AEKSAILGL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.271293	900.528032	-0.26444	-0.00011934	0.1973	8.9034E-05	-0.067147	-3.0301E-05	451.27136598508395	56.785	1.2198	56.621	56.058	57.278	-0.16431	-0.0024065	0.00010005	NaN	120.62	74	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2965500			438	4060	297	298							0.07378955557271638
AEKSAILGL	9	Unmodified	_AEKSAILGL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	451.271293	900.528032	-0.24915	-0.00011243	0.48741	0.00021995	0.23826	0.00010752	451.2713691574741	56.499	1.0009	56.597	56.283	57.284	0.097893	-0.026572	0.00036188	NaN	120.62	61	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2638400			439	4060	297	298							0.07378955557271638
AEKSAILGL	9	Unmodified	_AEKSAILGL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.271293	900.528032	0.082091	3.7045E-05	0.089668	4.0464E-05	0.17176	7.751E-05	451.2712273493273	56.755	0.82645	56.588	56.245	57.071	-0.1672	-0.035397	2.9089E-06	NaN	120.62	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1648100			440	4060	297	298							0.07378955557271638
AEKSRLQAQ	9	Unmodified	_AEKSRLQAQ_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7091674804688	2	515.78563	1029.55671	-0.59628	-0.00030755	0.89646	0.00046238	0.30018	0.00015483	515.785808042008	29.923	0.63051	29.679	29.274	29.905	-0.24415					34	14	4	0	0	0	0.024523	1	1891	1891		29.15	6.1071	1	724940	+		441	23682	298	299	474	474					0.04311073186408976
AEKVTISVL	9	Unmodified	_AEKVTISVL_					0	0	0			REV__ENST00000398988.7_2_17:25951918-25952683:+|nuORF	REV__ENST00000398988.7_2_17:25951918-25952683:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.29254150390625	2	480.292225	958.569897	0.28694	0.00013781	0.07923	3.8054E-05	0.36617	0.00017587	480.2920296719974	86.76	0.76254	86.715	86.38	87.142	-0.045105					41	17	3	0	0	0	0.32811	1	10879	10879		71.877	7.6702	1	760510	+		442	31817	299	300	475	475					0.08895511245816579
AELAELPVDN	10	Unmodified	_AELAELPVDN_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7733764648438	2	535.771854	1069.52915	-0.29263	-0.00015679	2.3091	0.0012372	2.0165	0.0010804	535.7730676876516	41.453	0.90016	41.453	41.153	42.053	0					62	25	3	0	0	0	0.50517	1	3740	3740		87.696	32.92	1	18141000			443	2546	300	301	476	476					-0.002828748644787993
AELAELPVDN	10	Unmodified	_AELAELPVDN_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7734375	2	535.771854	1069.52915	-0.62204	-0.00033327	2.5266	0.0013537	1.9045	0.0010204	535.7732451828175	41.63	2.2218	41.498	41.215	43.437	-0.1322					121	62	4	0	0	0	0.72729	1	3751	3751		65.465	10.689	1	16717000			444	2546	300	301	477	477					-0.002828748644787993
AELAELPVDN	10	Unmodified	_AELAELPVDN_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7730102539062	2	535.771854	1069.52915	-0.5785	-0.00030994	2.5699	0.0013769	1.9914	0.0010669	535.7732195467238	41.591	1.4273	41.614	41.324	42.751	0.023006					99	40	4	0	0	0	0.66532	2	3712	3689;3712		69.628	14.851	1	18587000			445	2546	300	301	478;479	479					-0.002828748644787993
AELDKKLL	8	Unmodified	_AELDKKLL_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENST00000596900.5_1_19:41036434-41060733:+|nuORF;nc|ENSG00000160460|Q9H254-5|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.28741455078125	2	465.286943	928.559333	-1.2711	-0.00059142	0.69987	0.00032564	-0.57122	-0.00026578	465.2873997239226	75.288	1.964	75.288	74.835	76.799	0					162	50	5	0	0	0	0.32941	1	9288	9288		107.01	2.9507	1	98323000			446	6817	301	302	480	480					0.09219528591370363
AELDSNPKP	9	Unmodified	_AELDSNPKP_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7459411621094	2	485.745639	969.476725	-0.83781	-0.00040696	0.55227	0.00026826	-0.28554	-0.0001387	485.7459014219184	62.233	0.80754	62.055	61.576	62.383	-0.17781					64	20	4	0	0	0	0.16468	2	6995	6995;7021		96.19	13.885	1	5867300	+		447	24322;28233	302	303	481;482	481					-0.009234132074311674
AELDSNPKP	9	Unmodified	_AELDSNPKP_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.74578857421875	2	485.745639	969.476725	-0.11452	-5.5629E-05	-0.33954	-0.00016493	-0.45407	-0.00022056	485.74544824671005	62.408	0.59152	62.15	61.82	62.411	-0.25824					35	14	3	0	0	0	0.20967	1	6992	6992		87.754	4.4671	1	5404000	+		448	24322;28233	302	303	483	483					-0.009234132074311674
AELFDFSR	8	Unmodified	_AELFDFSR_					0	0	0			REV__ENSG00000232434|ENST00000436881|AJM1	REV__ENSG00000232434|ENST00000436881|AJM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7939453125	2	492.742899	983.471246	1.1997	0.00059115	-1.2443	-0.00061311	-0.044572	-2.1963E-05	492.74215098525974	63.257	0.80177	63.311	62.931	63.733	0.054104					54	21	3	0	0	0	0.027866	1	7263	7263		30.504	3.7075	1	1567800	+		449	28904	303	304	484	484					-0.02115091999235119
AELFPEEPCS	10	Unmodified	_AELFPEEPCS_					0	0	0			REV__ENST00000544682.5_1_6:13961772-13977158:+|nuORF	REV__ENST00000544682.5_1_6:13961772-13977158:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2793579101562	2	561.244615	1120.47468	0.34428	0.00019322	3.9691	0.0022276	4.3134	0.0024209	561.2475117630119	85.064	0.6192	84.861	84.544	85.163	-0.20329					27	14	3	0	0	0	0.03519	1	10303	10303		35.618	5.1146	1	160910	+		450	33656	304	305	485	485					-0.08074210007521287
AELGSGVRNQI	11	Unmodified	_AELGSGVRNQI_					0	0	0			REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.3062744140625	2	572.309469	1142.60439	-0.48405	-0.00027703	-2.3947	-0.0013705	-2.8788	-0.0016475	572.3078343436534	105.18	1.775	105.18	104.07	105.85	0					75	49	3	0	0	0	0.67171	1	13516	13516		65.465	5.5346	1	467390	+		451	34585	305	306	486	486					0.03878727386609171
AELGVGVLIL	10	Unmodified	_AELGVGVLIL_					0	0	0			REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.28515625	2	492.310418	982.606283	-0.38059	-0.00018737	2.6856	0.0013221	2.305	0.0011348	492.3119713603219	93.21	0.55046	93.217	93.013	93.564	0.0077286					17	12	2	0	0	0	0.03519	1	11764	11764		23.042	0	1	60559	+		452	34827	306	307	487	487					0.11428388142530821
AELHAALHL	9	Unmodified	_AELHAALHL_					0	0	0		ENST00000375441.7_1_13:113882346-113887511:+|nuORF	ENST00000375441.7_1_13:113882346-113887511:+|nuORF	ENST00000375441.7_1_13:113882346-113887511:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7724304199219	2	487.774534	973.534515	0.60838	0.00029675	-1.9548	-0.0009535	-1.3464	-0.00065674	487.7734926861305	85.696	1.7137	85.559	85.197	86.911	-0.13753					71	39	3	0	0	0	0.88411	1	10413	10413		33.516	1.5607	1	3167900			453	13161	307	308	488	488					0.04668893508653582
AELIIIDKP	9	Unmodified	_AELIIIDKP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2766418457031	2	506.307875	1010.6012	0.10726	5.4306E-05	1.6055	0.00081288	1.7128	0.00086718	506.30856467349776	55.1	0.54208	54.894	54.538	55.08	-0.20613					22	14	2	0	0	0	0.024427	1	5830	5830		34.173	3.6689	1	105950			454	6479	308	309	489	489					0.09632084279905939
AELKDEPK	8	Unmodified	_AELKDEPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2864685058594	2	465.250557	928.486562	0.88973	0.00041395	1.1352	0.00052816	2.025	0.00094211	465.251696330758	75.345	1.0445	75.355	74.855	75.9	0.010376					37	27	3	0	0	0	0.027866	1	9161	9161		87.696	0	1	286040	+		455	25017	309	310	490	490					0.01945774797957256
AELLLEREP	9	Unmodified	_AELLLEREP_					0	0	0		nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;ENST00000494080.5_1_11:64109091-64110096:+|nuORF	nc|ENSG00000168071|A6NC98-4|CCDC88B	nc|ENSG00000168071|A6NC98-4|CCDC88B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2384643554688	2	535.298039	1068.58152	-1.6682	-0.00089299	-1.1377	-0.00060902	-2.8059	-0.001502	535.2960970529595	60.663	0.23159	60.742	60.647	60.879	0.078884					6	5	2	0	0	0	0.023061	1	6899	6899		69.628	0	1	55419			456	7783	310	311	491	491					0.04997708269138457
AELLLSLLT	9	Unmodified	_AELLLSLLT_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.8026123046875	2	486.802426	971.590298	0.59291	0.00028863	-0.27688	-0.00013479	0.31603	0.00015384	486.80198555718255	88.557	0.89377	88.529	88.05	88.944	-0.027664					57	20	4	0	0	0	0.59099	1	11137	11137		53.351	7.3995	1	476550	+		457	24996	311	312	492	492					0.10336681905619116
AELLLSLLT	9	Unmodified	_AELLLSLLT_					0	0	0			REV__nc|ENSG00000155229|Q96T76-5|MMS19	REV__nc|ENSG00000155229|Q96T76-5|MMS19	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	486.802426	971.590298	0.59291	0.00028863	-0.27688	-0.00013479	0.31603	0.00015384	486.80198555718255	88.557	0.89377	88.529	88.05	88.944	-0.027664	-0.03523	-0.0001949	NaN	53.351	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476550	+		458	24996	311	312							0.10336681905619116
AELLRSLQ	8	Unmodified	_AELLRSLQ_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2864685058594	2	465.274367	928.53418	0.85818	0.00039929	-4.0467	-0.0018828	-3.1885	-0.0014835	465.273552226196	75.298	0.29823	75.308	75.171	75.47	0.010376					8	7	2	0	0	0	0.027866	1	9161	9161		98.629	0	1	1049000			459	7033	312	313	493	493					0.06705473788792915
AELLTLPY	8	Unmodified	_AELLTLPY_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.2580261230469	2	460.260394	918.506234	-0.9769	-0.00044963	-3.3155	-0.001526	-4.2924	-0.0019756	460.25875103859966	37.878	0.56308	37.656	37.427	37.99	-0.22149					29	15	2	0	0	0	0.65272	1	3073	3073		71.378	0	1	1816000			460	6082	313	314	494	494					0.0437215080870601
AELLVRGEY	9	Unmodified	_AELLVRGEY_					0	0	0		ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2322387695312	2	525.284931	1048.55531	-0.10047	-5.2774E-05	-0.18717	-9.8316E-05	-0.28763	-0.00015109	525.2849663151117	50.484	0.44135	50.379	50.165	50.606	-0.10558					18	11	3	0	0	0	0.024436	1	5102	5102		30.504	21.681	1	431050			461	16187	314	315	495	495					0.03297439097673305
AELLVRVCD	9	Unmodified	_AELLVRVCD_					0	0	0			REV__nc|ENSG00000198881|Q8WXK4|ASB12	REV__nc|ENSG00000198881|Q8WXK4|ASB12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2867736816406	2	509.273509	1016.53247	-0.10728	-5.4635E-05	-1.5466	-0.00078765	-1.6539	-0.00084228	509.27159965867236	52.906	0.39441	52.717	52.51	52.905	-0.18982					20	9	3	0	0	0	0.024427	1	5496	5496		34.173	0	1	235450	+		462	28506	315	316	496	496					0.024860967085373886
AELMQGLALY	10	Unmodified	_AELMQGLALY_					0	0	0		SUFU|p.R146L|1|0.32|ENSG00000107882|chr10:102550089-102550089|G/T|missense_variant	SUFU|p.R146L|1|0.32|ENSG00000107882|chr10:102550089-102550089|G/T|missense_variant	SUFU|p.R146L|1|0.32|ENSG00000107882|chr10:102550089-102550089|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.329833984375	2	554.788992	1107.56343	-1.3371	-0.0007418	-3.9506	-0.0021918	-5.2877	-0.0029336	554.7863065204006	28.617	0.58733	28.372	28.121	28.709	-0.24524					15	13	2	0	0	0	0.03519	1	1669	1669		32.812	0	1	60798			463	37977	316	317	497	497					0.013952500227787823
AELPLLDL	8	Unmodified	_AELPLLDL_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400;EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2355041503906	2	442.260394	882.506234	-0.043694	-1.9324E-05	2.937	0.0012989	2.8933	0.0012796	442.26089858089165	33.831	0.1936	33.827	33.715	33.908	-0.0045624					6	4	2	0	0	0	0.027866	1	2455	2455		52.299	17.098	1	25092			464	9236	317	318	498	498					0.06028150808708688
AELPLNLDVP	10	Unmodified	_AELPLNLDVP_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3017578125	2	540.800414	1079.58628	-0.66376	-0.00035896	1.4497	0.00078402	0.78599	0.00042506	540.8026008812884	101.81	1.2524	101.82	101.29	102.55	0.0073471					77	28	4	0	0	0	0.42812	1	13007	13007		95.815	1.8087	1	2582800	+		465	27773	318	319	499	499					0.04966592411892634
AELQDEPK	8	Unmodified	_AELQDEPK_					0	0	0		nc|ENSG00000130856|Q9UL36-2|ZNF236;nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2864685058594	2	465.232364	928.450176	0.86952	0.00040453	-0.80193	-0.00037308	0.067587	3.1444E-05	465.23243503577606	75.347	0.33766	75.357	75.132	75.47	0.010368					14	8	2	0	0	0	0.027866	1	9161	9161		87.696	0	1	163650			466	4470	319	320	500	500					-0.01691102098754982
AELQQPSLA	9	Unmodified	_AELQQPSLA_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2459716796875	2	478.756007	955.497461	1.0932	0.00052338	-1.6216	-0.00077634	-0.52837	-0.00025296	478.7552070880994	51.22	0.61769	51.039	50.797	51.415	-0.18071					26	15	3	0	0	0	0.024209	1	5274	5274		66.429	20.457	1	732550	+		467	36757	320	321	501	501					0.017931771722373924
AELQQPSLA	9	Unmodified	_AELQQPSLA_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.756007	955.497461	-0.16354	-7.8298E-05	-0.12089	-5.7879E-05	-0.28444	-0.00013618	478.7557315749537	51.295	0.57573	51.146	50.933	51.509	-0.14916	0.061392	0.00070964	NaN	66.429	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1591800	+		468	36757	320	321							0.017931771722373924
AELQQPSLA	9	Unmodified	_AELQQPSLA_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.756007	955.497461	-0.82913	-0.00039695	0.52427	0.000251	-0.30486	-0.00014596	478.7560766923391	50.972	0.65798	51.059	50.82	51.478	0.087006	-0.025297	0.0013274	NaN	66.429	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429600	+		469	36757	320	321							0.017931771722373924
AELRKSQVL	9	Unmodified	_AELRKSQVL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;ENST00000567704.5_1_15:78188620-78189748:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7579956054688	2	522.314023	1042.61349	-0.51249	-0.00026768	0.62134	0.00032453	0.10885	5.6854E-05	522.3142409527075	41.358	0.6608	41.128	40.848	41.508	-0.2303					40	16	4	0	0	0	0.024344	1	3631	3631		64.207	12.872	1	1317600			470	8381	321	322	502	502					0.09389120742957857
AELSVWELQW	10	Unmodified	_AELSVWELQW_					0	0	0			REV__nc|ENSG00000290320|P0DW85|H2BN1	REV__nc|ENSG00000290320|P0DW85|H2BN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	631.2758178710938	2	630.816596	1259.61864	-0.23367	-0.0001474	-4.4643	-0.0028162	-4.698	-0.0029636	630.8139787677532	59.399	0.24651	59.209	59.017	59.264	-0.18975					6	5	2	0	0	0	0.03519	1	6543	6543		54.776	26.894	1	111110	+		471	37227	322	323	503	503					-0.0007862018510422786
AELWWAPE	8	Unmodified	_AELWWAPE_					0	0	0			REV__ENST00000547799.5_1_12:48099921-48111279:+|nuORF	REV__ENST00000547799.5_1_12:48099921-48111279:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3128967285156	2	501.239993	1000.46543	-0.64781	-0.00032471	-0.033568	-1.6826E-05	-0.68138	-0.00034154	501.2396868778458	75.776	0.44636	75.776	75.586	76.032	0					19	11	2	0	0	0	0.027866	1	9353	9353		35.201	0	1	143170	+		472	34870	323	324	504	504					-0.03478190510918466
AEMEHVNIT	9	Unmodified	_AEMEHVNIT_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2498168945312	2	522.244949	1042.47534	-0.12609	-6.5847E-05	0.10349	5.4046E-05	-0.022597	-1.1801E-05	522.2453991581845	72.214	1.5743	71.939	70.967	72.541	-0.2751					61	37	3	0	0	0	0.024319	1	8421	8421		56.721	21.103	1	109740	+		473	22521	324	325	505	505					-0.04419370567848091
AEMEKFDKSK	10	Unmodified	_AEMEKFDKSK_					0	0	0		TMSB4Y|p.I10M|1|0.5|ENSG00000154620|chrY:13704365-13704365|C/G|missense_variant	TMSB4Y|p.I10M|1|0.5|ENSG00000154620|chrY:13704365-13704365|C/G|missense_variant	TMSB4Y|p.I10M|1|0.5|ENSG00000154620|chrY:13704365-13704365|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.8878173828125	3	404.869151	1211.58562	1.6106	0.00065207	-3.3278	-0.0013473	-1.7173	-0.00069527	404.8678687449506	17.786	0.3997	17.632	17.358	17.758	-0.15403					9	7	2	0	0	0	0.03519	1	220	220		22.562	0	1	32676			474	38095	325	326	506	506					-0.011705702994731837
AEMEKFDKSK	10	Unmodified	_AEMEKFDKSK_					0	0	0		TMSB4Y|p.I10M|1|0.5|ENSG00000154620|chrY:13704365-13704365|C/G|missense_variant	TMSB4Y|p.I10M|1|0.5|ENSG00000154620|chrY:13704365-13704365|C/G|missense_variant	TMSB4Y|p.I10M|1|0.5|ENSG00000154620|chrY:13704365-13704365|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	404.869151	1211.58562	3.8103	0.0015427	-5.6829	-0.0023008	-1.8726	-0.00075817	404.8666402426052	17.844	0.34681	17.594	17.47	17.817	-0.25049	-0.019333	-0.0013457	NaN	38.714	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43074			475	38095	325	326							-0.011705702994731837
AEMESDCCP	9	Unmodified	_AEMESDCCP_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7840576171875	2	492.659003	983.303454	-0.36565	-0.00018014	-1.6271	-0.00080162	-1.9928	-0.00098176	492.65857679310943	46.786	0.098999	46.592	46.545	46.644	-0.19387					4	2	2	0	0	0	0.024541	1	4521	4521		11.511	7.5258	1	105400			476	998	326	327	507	507					-0.18886606642024617
AEMGRVMSN	9	Unmodified	_AEMGRVMSN_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7944641113281	2	497.725869	993.437185	-1.1914	-0.00059297	-0.32128	-0.00015991	-1.5126	-0.00075288	497.7255513375393	38.641	1.1491	38.461	37.844	38.993	-0.17929					47	32	3	0	0	0	0.024405	1	3241	3241		20.947	0	1	200180	+		477	24816	327	328	508	508					-0.0597957975414829
AEMKDMGIQV	10	Oxidation (M)	_AEMKDM(Oxidation (M))GIQV_		AEM(0.008)KDM(0.992)GIQV		AEM(-21)KDM(21)GIQV	0	0	1		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;NOS1|p.C677Lfs*38|1|0.62|ENSG00000089250|chr12:117265424-117265425|-/C|frameshift_variant;nc|ENSG00000089250|P29475-4|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2686767578125	2	569.267567	1136.52058	-0.45197	-0.00025729	0.3296	0.00018763	-0.12237	-6.9661E-05	569.2676426030404	65.553	0.65852	65.302	65.027	65.685	-0.25112					31	15	3	0	0	0	0.47897	1	7489	7489		90.601	16.346	2	1253200			478	1904	328	329	509	509		69			-0.042218880969812744
AEMLKANQT	9	Unmodified	_AEMLKANQT_					0	0	0		NOD1|p.V894A|1|0.21|ENSG00000106100|chr7:30433120-30433120|A/G|missense_variant	NOD1|p.V894A|1|0.21|ENSG00000106100|chr7:30433120-30433120|A/G|missense_variant	NOD1|p.V894A|1|0.21|ENSG00000106100|chr7:30433120-30433120|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2744445800781	2	503.255317	1004.49608	0.0044788	2.254E-06	-3.5969	-0.0018102	-3.5924	-0.0018079	503.25325789181454	46.588	3.4128	46.588	45.986	49.399	0					147	97	4	0	0	0	0.023239	1	4963	4963		84.916	8.1414	1	7267200			479	18880	329	330	510	510					-0.005987801881929045
AEMLKANQT	9	Unmodified	_AEMLKANQT_					0	0	0		NOD1|p.V894A|1|0.21|ENSG00000106100|chr7:30433120-30433120|A/G|missense_variant	NOD1|p.V894A|1|0.21|ENSG00000106100|chr7:30433120-30433120|A/G|missense_variant	NOD1|p.V894A|1|0.21|ENSG00000106100|chr7:30433120-30433120|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.255317	1004.49608	-0.66097	-0.00033264	-2.8315	-0.001425	-3.4924	-0.0017576	503.2536363198962	46.693	1.3397	46.54	45.821	47.161	-0.15301	-0.046252	0.00051703	NaN	84.916	85	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6930300			480	18880	329	330							-0.005987801881929045
AEMPPSPKL	9	Unmodified	_AEMPPSPKL_					0	0	0		ENST00000498764.5_1_11:131779992-131781511:+|nuORF;ENST00000470371.1_1_11:131780984-131781511:+|nuORF;ENST00000425719.6_1_11:131781445-131781511:+|nuORF	ENST00000498764.5_1_11:131779992-131781511:+|nuORF	ENST00000498764.5_1_11:131779992-131781511:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7886962890625	2	485.257328	968.500103	-0.97995	-0.00047553	1.604	0.00077837	0.62409	0.00030285	485.25804014487585	47.047	0.57625	47.106	46.88	47.457	0.059097					29	15	3	0	0	0	0.023007	1	4619	4619		87.754	10.98	1	224360			481	14068	330	331	511	511					0.014593093055395912
AEMYPLHSRDS	11	Unmodified	_AEMYPLHSRDS_					0	0	0			REV__nc|ENSG00000140465|P04798-3|CYP1A1	REV__nc|ENSG00000140465|P04798-3|CYP1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.2691955566406	3	435.867922	1304.58194	-0.33843	-0.00014751	1.196	0.00052132	0.85761	0.00037381	436.20361966753535	23.272	0.11554	23.211	23.152	23.267	-0.060862					4	2	2	0	0	0	0.024741	1	891	891		28.384	8.0688	1	20522	+		482	19640	331	332	512	512					-0.058172400733383256
AENAVYLCDGE	11	Unmodified	_AENAVYLCDGE_					0	0	0		USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	592.7774047851562	2	592.250428	1182.4863	-1.0684	-0.00063279	-1.2611	-0.00074689	-2.3296	-0.0013797	592.2496200799017	81.548	0.42102	81.405	81.192	81.613	-0.14248					17	9	2	0	0	0	0.024735	1	9771	9771		31.634	9.9485	1	138780			483	38138	332	333	513	513					-0.09764012984214787
AENAVYLCDGE	11	Unmodified	_AENAVYLCDGE_					0	0	0		USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.250428	1182.4863	-0.25422	-0.00015056	-1.7964	-0.0010639	-2.0506	-0.0012145	592.2492339340494	81.646	0.50409	81.417	81.188	81.692	-0.2289	0.017444	-0.00027867	NaN	14.086	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132900			484	38138	332	333							-0.09764012984214787
AENAVYLCDGE	11	Unmodified	_AENAVYLCDGE_					0	0	0		USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	USP9Y|p.R695G|1|0.76|ENSG00000114374|chrY:12773677-12773677|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.250428	1182.4863	-0.53704	-0.00031806	-1.7546	-0.0010392	-2.2916	-0.0013572	592.2493765033543	81.569	0.46277	81.376	81.171	81.634	-0.19333	-0.023412	-0.00022913	NaN	14.086	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122950			485	38138	332	333							-0.09764012984214787
AENEPPRKW	9	Unmodified	_AENEPPRKW_					0	0	0			REV__nc|ENSG00000124155|Q969N2-2|PIGT	REV__nc|ENSG00000124155|Q969N2-2|PIGT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.7322387695312	2	563.78563	1125.55671	-1.4994	-0.00084534	-2.6848	-0.0015137	-4.1842	-0.002359	563.7841025227923	51.812	1.5097	51.543	51.163	52.673	-0.26903					65	39	2	0	0	0	0.024313	1	5346	5346		60.118	22.959	1	547750	+		486	22737	333	334	514	514					-0.0010492681358300615
AENEPPRKW	9	Unmodified	_AENEPPRKW_					0	0	0			REV__nc|ENSG00000124155|Q969N2-2|PIGT	REV__nc|ENSG00000124155|Q969N2-2|PIGT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.78563	1125.55671	-0.34238	-0.00019303	-6.9646	-0.0039266	-7.307	-0.0041196	563.7819894493355	51.905	1.2387	51.905	51.395	52.634	0	0.16329	-0.00087685	NaN	51.193	55	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256330	+		487	22737	333	334							-0.0010492681358300615
AENEPPRKW	9	Unmodified	_AENEPPRKW_					0	0	0			REV__nc|ENSG00000124155|Q969N2-2|PIGT	REV__nc|ENSG00000124155|Q969N2-2|PIGT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.78563	1125.55671	-0.52789	-0.00029762	-6.7558	-0.0038088	-7.2837	-0.0041064	563.7822792039102	51.986	1.311	51.839	51.371	52.682	-0.14735	0.09729	-0.00064138	NaN	51.193	56	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330030	+		488	22737	333	334							-0.0010492681358300615
AENEPPRKW	9	Unmodified	_AENEPPRKW_					0	0	0			REV__nc|ENSG00000124155|Q969N2-2|PIGT	REV__nc|ENSG00000124155|Q969N2-2|PIGT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.78563	1125.55671	-1.298	-0.00073177	-7.9153	-0.0044626	-9.2133	-0.0051943	563.7824414769569	51.827	1.2216	51.915	51.376	52.598	0.088043	0.17346	-0.0019488	NaN	51.193	56	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220230	+		489	22737	333	334							-0.0010492681358300615
AENISSASIW	10	Unmodified	_AENISSASIW_					0	0	0			REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2642822265625	2	539.264196	1076.51384	-1.0416	-0.0005617	0.62363	0.0003363	-0.41797	-0.00022539	539.2645935166826	69.432	1.0744	69.209	68.894	69.969	-0.22245					59	25	4	0	0	0	0.57594	1	8060	8060		79.713	6.8333	1	1790300	+		490	24723	334	335	515	515					-0.021357416616638147
AENKRRLA	8	Unmodified	_AENKRRLA_					0	0	0			REV__ENSG00000105321|ENST00000221922|CCDC9	REV__ENSG00000105321|ENST00000221922|CCDC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2458190917969	2	479.283057	956.551562	-0.81278	-0.00038955	-3.2218	-0.0015441	-4.0345	-0.0019337	479.2814226938255	51.476	0.5746	51.199	50.929	51.504	-0.27643					32	14	3	0	0	0	0.027866	1	5293	5293		47.657	23.138	1	271640	+		491	19397	335	336	516	516					0.07154814114448982
AENNQLLK	8	Unmodified	_AENNQLLK_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2864685058594	2	465.256174	928.497795	0.83819	0.00038997	4.2444	0.0019748	5.0826	0.0023647	465.2582445487576	75.334	0.37762	75.344	75.092	75.47	0.010376					17	9	3	0	0	0	0.027866	1	9161	9161		104.06	29.802	1	302410			492	1059	336	337	517	517					0.030685968920806772
AENSFIKTI	9	Unmodified	_AENSFIKTI_					0	0	0			REV__nc|ENSG00000258597|P20848|SERPINA2	REV__nc|ENSG00000258597|P20848|SERPINA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.7823486328125	2	511.779482	1021.54441	-0.053373	-2.7315E-05	-3.7565	-0.0019225	-3.8098	-0.0019498	511.7772683405623	59.312	0.30138	59.398	59.277	59.579	0.085682					17	7	3	0	0	0	0.024319	1	6688	6688		39.253	2.0937	1	455720	+		493	37179	337	338	518	518					0.034500367233818
AENSLDSLVF	10	Unmodified	_AENSLDSLVF_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.7717895507812	2	547.771854	1093.52915	-1.7056	-0.00093428	-0.065254	-3.5744E-05	-1.7709	-0.00097003	547.7718079405889	29.995	0.73516	29.995	29.773	30.508	0					30	17	3	0	0	0	0.74632	1	1891	1891		64.207	10.856	1	1095400			494	7612	338	339	519	519					-0.01386874864465426
AENSLDSLVF	10	Unmodified	_AENSLDSLVF_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.7698364257812	2	547.771854	1093.52915	-1.1335	-0.00062092	-0.69962	-0.00038323	-1.8332	-0.0010041	547.7714198471614	29.964	0.52942	29.972	29.717	30.247	0.0086708					36	12	4	0	0	0	0.64538	1	1875	1875		71.877	5.4482	1	1047100			495	7612	338	339	520	520					-0.01386874864465426
AENVLALDI	9	Unmodified	_AENVLALDI_					0	0	0		ENSG00000213199|ENST00000349064|ASIC3;nc|ENSG00000213199|Q9UHC3-2|ASIC3;nc|ENSG00000213199|Q9UHC3-3|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.78167724609375	2	479.266207	956.517862	-1.0145	-0.00048619	3.9264	0.0018818	2.912	0.0013956	479.2683049313164	44.326	0.57935	44.082	43.711	44.291	-0.2444					18	15	2	0	0	0	0.024405	1	4068	4068		27.882	3.6795	1	146110			496	10494	339	340	521	521					0.03786347832033243
AENVLALDI	9	Unmodified	_AENVLALDI_					0	0	0		ENSG00000213199|ENST00000349064|ASIC3;nc|ENSG00000213199|Q9UHC3-2|ASIC3;nc|ENSG00000213199|Q9UHC3-3|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.266207	956.517862	-0.4552	-0.00021816	2.3427	0.0011228	1.8875	0.00090463	479.2669843291763	44.208	0.38576	44.103	43.889	44.275	-0.10468	0.010684	-0.0005786	NaN	37.812	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164530			497	10494	339	340							0.03786347832033243
AEPAPQITTL	10	Unmodified	_AEPAPQITTL_					0	0	0		ENST00000376755.1_1_X:48433346-48433559:+|nuORF	ENST00000376755.1_1_X:48433346-48433559:+|nuORF	ENST00000376755.1_1_X:48433346-48433559:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3187255859375	2	520.784764	1039.55498	-1.0692	-0.00055682	1.9168	0.00099823	0.84757	0.0004414	520.7858988558913	65.293	0.44909	65.293	64.909	65.358	0					16	12	2	0	0	0	0.03519	1	7675	7675		22.58	0.89391	1	198130			498	13191	340	341	522	522					0.036780193777985914
AEPAPQITTL	10	Unmodified	_AEPAPQITTL_					0	0	0		ENST00000376755.1_1_X:48433346-48433559:+|nuORF	ENST00000376755.1_1_X:48433346-48433559:+|nuORF	ENST00000376755.1_1_X:48433346-48433559:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.784764	1039.55498	-0.45865	-0.00023886	0.040387	2.1033E-05	-0.41826	-0.00021782	520.7851117461935	65.264	0.41542	65.302	65.007	65.422	0.037384	0.0041539	-0.0010968	NaN	16.717	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190080			499	13191	340	341							0.036780193777985914
AEPDQRAL	8	Unmodified	_AEPDQRAL_					0	0	0			REV__ENST00000580601.5_1_17:73695932-73698582:+|nuORF	REV__ENST00000580601.5_1_17:73695932-73698582:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26910400390625	2	450.232699	898.450845	-0.23703	-0.00010672	-0.6827	-0.00030737	-0.91972	-0.00041409	450.2332300625013	38.765	0.58127	38.666	38.437	39.018	-0.098755					25	15	3	0	0	0	0.027866	1	3231	3231		55.504	4.1688	1	415120	+		500	35521	341	342	523	523					-0.002442626590436703
AEPKSTFAP	9	Unmodified	_AEPKSTFAP_					0	0	0			REV__ENST00000369393.7_1_6:90422458-90422915:-|nuORF	REV__ENST00000369393.7_1_6:90422458-90422915:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.2805480957031	2	474.245275	946.475997	-0.062838	-2.9801E-05	-0.13934	-6.6083E-05	-0.20218	-9.5884E-05	474.24504764810723	53.916	0.6153	53.671	53.458	54.073	-0.2453					31	19	2	0	0	0	0.023417	1	5676	5676		49.442	0	1	1264400	+		501	31086	342	343	524	524					0.0006179214351504925
AEPLLLVRIN	10	Unmodified	_AEPLLLVRIN_					0	0	0		ENST00000574149.6_1_17:19314736-19316565:+|nuORF;ENSG00000128482|ENST00000461366|RNF112;nc|ENSG00000128482|Q9ULX5-2|RNF112	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3115844726562	2	569.353148	1136.69174	-0.098813	-5.626E-05	1.7944	0.0010216	1.6956	0.00096537	569.3542010252785	52.226	0.18985	52.042	51.963	52.153	-0.18404					6	4	2	0	0	0	0.03519	1	5393	5393		21.96	1.013	1	56442			502	4288	343	344	525	525					0.1288655332818962
AEPLPGPQN	9	Unmodified	_AEPLPGPQN_					0	0	0			REV__ENSG00000268350|ENST00000622447|FAM156A	REV__ENSG00000268350|ENST00000622447|FAM156A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.73431396484375	2	461.735074	921.455596	0.69355	0.00032024	-2.2284	-0.0010289	-1.5349	-0.00070869	461.73425377591343	103.22	0.82276	103.22	102.79	103.62	-0.0046082					26	19	2	0	0	0	0.92825	1	13172	13172		30.504	4.9296	1	345850	+		503	27256	344	345	526	526					-0.008273785162828062
AEPLPGPQN	9	Unmodified	_AEPLPGPQN_					0	0	0			REV__ENSG00000268350|ENST00000622447|FAM156A	REV__ENSG00000268350|ENST00000622447|FAM156A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	461.735074	921.455596	-0.32091	-0.00014817	-0.97328	-0.0004494	-1.2942	-0.00059757	461.73465288435875	103.12	1.1731	103.12	102.77	103.94	0	-0.2388	0.00050223	NaN	30.504	45	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376740	+		504	27256	344	345							-0.008273785162828062
AEPLPGPQN	9	Unmodified	_AEPLPGPQN_					0	0	0			REV__ENSG00000268350|ENST00000622447|FAM156A	REV__ENSG00000268350|ENST00000622447|FAM156A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	461.735074	921.455596	0.040481	1.8691E-05	-1.5492	-0.00071532	-1.5087	-0.00069663	461.7345074903091	103.21	1.0519	103.21	102.78	103.83	0.0054245	-0.14538	-2.9626E-05	NaN	30.504	44	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286110	+		505	27256	344	345							-0.008273785162828062
AEPLPGPQN	9	Unmodified	_AEPLPGPQN_					0	0	0			REV__ENSG00000268350|ENST00000622447|FAM156A	REV__ENSG00000268350|ENST00000622447|FAM156A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	461.735074	921.455596	0.69355	0.00032024	-2.2284	-0.0010289	-1.5349	-0.00070869	461.73425377591343	103.22	0.82276	103.22	102.79	103.62	-0.0046082	-0.14114	-0.00065684	NaN	30.504	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345850	+		506	27256	344	345							-0.008273785162828062
AEPLPGPQN	9	Unmodified	_AEPLPGPQN_					0	0	0			REV__ENSG00000268350|ENST00000622447|FAM156A	REV__ENSG00000268350|ENST00000622447|FAM156A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	461.735074	921.455596	-0.36915	-0.00017045	-1.3565	-0.00062633	-1.7256	-0.00079678	461.7346477897209	103.79	0.73402	103.66	103.29	104.02	-0.12927	0.30499	0.00014835	NaN	30.504	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153390	+		507	27256	344	345							-0.008273785162828062
AEPLRREL	8	Unmodified	_AEPLRREL_					0	0	0			REV__ENST00000587757.5_1_18:13612520-13612649:+|nuORF	REV__ENST00000587757.5_1_18:13612520-13612649:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.76922607421875	2	492.285266	982.555979	0.15174	7.4697E-05	3.5602	0.0017526	3.7119	0.0018273	492.28667916575955	42.744	1.0768	42.744	42.255	43.332	0					75	29	4	0	0	0	0.027866	1	3873	3873		53.351	0	1	1201200	+		508	35632	345	346	527	527					0.06400278537375925
AEPLRREL	8	Unmodified	_AEPLRREL_					0	0	0			REV__ENST00000587757.5_1_18:13612520-13612649:+|nuORF	REV__ENST00000587757.5_1_18:13612520-13612649:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.285266	982.555979	-0.05353	-2.6352E-05	3.0665	0.0015096	3.013	0.0014833	492.2868632647029	42.948	0.83614	42.809	42.448	43.284	-0.13929	-0.019728	-0.00017273	NaN	66.429	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1179700	+		509	35632	345	346							0.06400278537375925
AEPLRREL	8	Unmodified	_AEPLRREL_					0	0	0			REV__ENST00000587757.5_1_18:13612520-13612649:+|nuORF	REV__ENST00000587757.5_1_18:13612520-13612649:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.285266	982.555979	0.14919	7.3444E-05	3.4235	0.0016853	3.5727	0.0017588	492.2866639988969	42.905	0.98139	42.933	42.429	43.41	0.02803	0.10447	0.00017868	NaN	66.429	71	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1165300	+		510	35632	345	346							0.06400278537375925
AEPMAGECC	9	Unmodified	_AEPMAGECC_					0	0	0		ENST00000273853.10_2_4:68411240-68411279:-|nuORF	ENST00000273853.10_2_4:68411240-68411279:-|nuORF	ENST00000273853.10_2_4:68411240-68411279:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.657958984375	2	455.658806	909.30306	-0.52534	-0.00023938	4.3376	0.0019765	3.8122	0.0017371	455.66076931397373	66.855	1.1579	66.631	65.905	67.063	-0.22374					44	33	2	0	0	0	0.90698	1	7704	7704		31.955	1.4512	1	1145500			511	11673	346	347	528	528					-0.15521981571225751
AEPNGFHAAR	10	Unmodified	_AEPNGFHAAR_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2609252929688	2	535.262322	1068.51009	-0.38331	-0.00020517	-2.7111	-0.0014512	-3.0944	-0.0016563	535.2609549621018	24.492	1.7442	24.277	23.954	25.698	-0.2151					108	40	5	0	0	0	0.88896	1	1078	1078		54.776	1.4249	1	25489000	+		512	26771	347	348	529	529					-0.021423666448754375
AEPQQLQSL	9	Unmodified	_AEPQQLQSL_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.30316162109375	2	507.266739	1012.51892	-0.55943	-0.00028378	0.049073	2.4893E-05	-0.51036	-0.00025889	507.2665339479151	46.81	0.67288	46.657	46.342	47.015	-0.15301					26	17	2	0	0	0	0.023111	1	4666	4666		85.862	11.887	1	184900	+		513	27249	348	349	530	530					0.013165622009523759
AEPQQLQSL	9	Unmodified	_AEPQQLQSL_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.266739	1012.51892	-0.093622	-4.7491E-05	-0.49556	-0.00025138	-0.58919	-0.00029887	507.2664036171425	46.668	0.46907	46.668	46.343	46.812	0	0.015705	-0.0001562	NaN	85.862	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298510	+		514	27249	348	349							0.013165622009523759
AEPQQLQSL	9	Unmodified	_AEPQQLQSL_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.266739	1012.51892	-0.12446	-6.3136E-05	-0.25801	-0.00013088	-0.38247	-0.00019401	507.2664441898341	46.58	0.49291	46.632	46.342	46.834	0.051395	-0.020637	8.4809E-05	NaN	85.862	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379090	+		515	27249	348	349							0.013165622009523759
AEPQTPLEQD	10	Unmodified	_AEPQTPLEQD_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.3128662109375	2	564.264393	1126.51423	-0.3298	-0.0001861	-0.86361	-0.00048731	-1.1934	-0.0006734	564.2631083801499	96.956	0.65623	96.795	96.25	96.906	-0.16106					17	14	2	0	0	0	0.03519	1	11956	11956		45.022	11.101	1	80189	+		516	20238	349	350	531	531					-0.04396366732453316
AEPSLHKPMY	10	Unmodified	_AEPSLHKPMY_					0	0	0		ENSG00000171561|ENST00000641541|OR2AT4	ENSG00000171561|ENST00000641541|OR2AT4	ENSG00000171561|ENST00000641541|OR2AT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.7704467773438	2	586.792066	1171.56958	-0.54037	-0.00031709	3.4283	0.0020117	2.8879	0.0016946	586.7952759170987	79.411	0.61996	79.192	78.791	79.41	-0.21923					19	14	2	0	0	0	0.03519	1	9513	9513		98.629	36.522	1	115320			517	8171	350	351	532	532					-0.009342317456912497
AEPTLIRQSN	10	Unmodified	_AEPTLIRQSN_					0	0	0			REV__nc|ENSG855|P10266|ERVK-10_pol	REV__nc|ENSG855|P10266|ERVK-10_pol	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8406982421875	2	564.80402	1127.59349	0.28681	0.00016199	1.2118	0.00068444	1.4986	0.00084643	564.8071174477365	58.725	1.0489	58.537	57.993	59.042	-0.18705					78	28	4	0	0	0	0.03519	1	6548	6548		24.519	0	1	625920	+		518	37253	351	352	533	533					0.03479325012335721
AEPVKRNGI	9	Unmodified	_AEPVKRNGI_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2849426269531	2	492.285266	982.555979	0.2043	0.00010057	-0.22472	-0.00011063	-0.020422	-1.0054E-05	492.2850901502164	93.374	1.3877	93.252	92.628	94.016	-0.12215					83	31	5	0	0	0	0.91321	1	11488	11488		31.53	1.2121	1	2999800	+		519	24641	352	353	534	534					0.06400278537375925
AEQAKVKKAL	10	Unmodified	_AEQAKVKKAL_					0	0	0		ENSG00000131165|ENST00000397901|CHMP1A;ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENSG00000131165|ENST00000397901|CHMP1A	ENSG00000131165|ENST00000397901|CHMP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.7620239257812	2	543.337498	1084.66044	-0.57449	-0.00031214	3.4222	0.0018594	2.8477	0.0015473	543.3394896327576	86.969	1.7435	86.99	85.816	87.56	0.021263					81	40	3	0	0	0	0.03519	1	10717	10717		29.17	9.1733	1	166080			520	4502	353	354	535	535					0.12149980294066154
AEQAKVKKAL	10	Unmodified	_AEQAKVKKAL_					0	0	0		ENSG00000131165|ENST00000397901|CHMP1A;ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENSG00000131165|ENST00000397901|CHMP1A	ENSG00000131165|ENST00000397901|CHMP1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.337498	1084.66044	-0.18878	-0.00010257	3.4895	0.001896	3.3008	0.0017934	543.3392441854693	87.013	1.5315	87.013	86.042	87.573	0	0.034003	4.2712E-05	NaN	36.447	62	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169140			521	4502	353	354							0.12149980294066154
AEQAKVKKAL	10	Unmodified	_AEQAKVKKAL_					0	0	0		ENSG00000131165|ENST00000397901|CHMP1A;ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENSG00000131165|ENST00000397901|CHMP1A	ENSG00000131165|ENST00000397901|CHMP1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.337498	1084.66044	-0.45129	-0.0002452	3.4158	0.0018559	2.9645	0.0016107	543.3393758245002	86.97	1.6933	86.935	85.999	87.693	-0.035362	-0.044672	-3.7425E-05	NaN	36.447	81	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155300			522	4502	353	354							0.12149980294066154
AEQAQQKPQ	9	Unmodified	_AEQAQQKPQ_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.7767333984375	2	514.261988	1026.50942	-0.45991	-0.00023651	1.4445	0.00074286	0.9846	0.00050634	514.2626760145312	25.075	0.68564	24.848	24.246	24.931	-0.22683					19	15	2	0	0	0	0.024477	1	1169	1169		27.882	0	1	48082	+		523	37143	354	355	536	536					-0.0027720608459276264
AEQGIQAEP	9	Unmodified	_AEQGIQAEP_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.78155517578125	2	471.729989	941.445425	-0.52428	-0.00024732	-0.41999	-0.00019812	-0.94427	-0.00044544	471.72970503198246	43.967	0.79561	43.967	43.621	44.417	0					35	22	2	0	0	0	0.02435	1	4160	4160		51.335	10.763	1	460240	+		524	25603	355	356	537	537					-0.02763986241529892
AEQHHNHS	8	Unmodified	_AEQHHNHS_					0	0	0			REV__DAG1|p.A355Efs*82|1|0.25|ENSG00000173402|chr3:49531575-49531585|CTCCTCCAGTC/-|frameshift_variant	REV__DAG1|p.A355Efs*82|1|0.25|ENSG00000173402|chr3:49531575-49531585|CTCCTCCAGTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2899169921875	2	480.207547	958.400541	-0.088813	-4.2649E-05	-0.45726	-0.00021958	-0.54607	-0.00026223	480.2072412524364	26.084	1.7947	26.084	24.653	26.447	0					51	42	2	0	0	0	0.027866	1	1225	1225		31.955	0	1	74233	+		525	19649	356	357	538	538					-0.08032372264199239
AEQKQLLEV	9	Unmodified	_AEQKQLLEV_					0	0	0		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2;ENST00000301781.10_1_11:62457841-62462085:-|nuORF	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2985229492188	2	529.298039	1056.58152	-0.77065	-0.0004079	-0.83744	-0.00044326	-1.6081	-0.00085116	529.297329750578	51.968	1.5576	52.06	51.344	52.902	0.091942					86	37	4	0	0	0	0.17822	1	5489	5489		93.195	2.4188	1	8195200			526	7767	357	358	539	539					0.055497082691545074
AEQKRRKY	8	Unmodified	_AEQKRRKY_					0	0	0			REV__nc|ENSG00000131323|Q13114-2|TRAF3	REV__nc|ENSG00000131323|Q13114-2|TRAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7803955078125	2	539.809439	1077.60433	-1.393	-0.00075193	0.89777	0.00048463	-0.49519	-0.00026731	539.8097545579425	28.478	0.36497	28.232	28.041	28.406	-0.24524					12	8	2	0	0	0	0.027866	1	1643	1643		20.482	5.8177	1	115020	+		527	23199	358	359	540	540					0.0686277217728275
AEQLNQNII	9	Unmodified	_AEQLNQNII_					0	0	0			REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7803344726562	2	521.780013	1041.54547	0.31697	0.00016539	0.91059	0.00047513	1.2276	0.00064052	521.7803347831405	85.688	0.8843	85.688	85.372	86.257	0					60	20	4	0	0	0	0.32811	1	10767	10767		71.877	4.3838	1	2567400	+		528	30035	359	360	541	541					0.026362510922808724
AEQLNQNII	9	Unmodified	_AEQLNQNII_					0	0	0			REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7802124023438	2	521.780013	1041.54547	-0.95866	-0.00050021	2.2575	0.0011779	1.2989	0.00067772	521.7810048489389	85.612	1.1811	85.636	85.325	86.506	0.023666					66	27	3	0	0	0	0.17822	1	10681	10681		93.195	5.499	1	2528800	+		529	30035	359	360	542	542					0.026362510922808724
AEQLNQNII	9	Unmodified	_AEQLNQNII_					0	0	0			REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.780013	1041.54547	0.062049	3.2376E-05	1.3951	0.00072794	1.4572	0.00076032	521.7805532954852	85.679	0.72222	85.484	85.129	85.851	-0.19508	-0.073304	-6.0195E-06	NaN	93.195	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	940040	+		530	30035	359	360							0.026362510922808724
AEQLNQNII	9	Unmodified	_AEQLNQNII_					0	0	0			REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.780013	1041.54547	0.94511	0.00049314	0.9957	0.00051954	1.9408	0.0010127	521.7800384121374	85.578	1.1812	85.429	84.827	86.008	-0.14967	-0.1281	-0.00042283	NaN	93.195	48	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763770	+		531	30035	359	360							0.026362510922808724
AEQLNQNII	9	Unmodified	_AEQLNQNII_					0	0	0			REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.780013	1041.54547	0.49133	0.00025636	1.2023	0.00062732	1.6936	0.00088368	521.780304241338	85.639	0.93869	85.501	85.197	86.136	-0.13753	-0.055717	-0.00020727	NaN	93.195	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847400	+		532	30035	359	360							0.026362510922808724
AEQMKKNRLT	10	Unmodified	_AEQMKKNRLT_					0	0	0			REV__OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant	REV__OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	609.7572021484375	2	609.834797	1217.65504	-0.12524	-7.6376E-05	-2.5208	-0.0015373	-2.646	-0.0016136	609.8333477432096	53.364	0.56443	53.106	52.843	53.408	-0.25839					25	14	2	0	0	0	0.03519	1	5578	5578		22.58	0	1	152410	+		533	27009	360	361	543	543					0.054919334399755826
AEQPPHLTPGI	11	Unmodified	_AEQPPHLTPGI_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.30908203125	2	580.308938	1158.60332	-0.012654	-7.3432E-06	4.1216	0.0023918	4.109	0.0023845	580.3111152288582	74.379	0.83282	74.103	73.887	74.72	-0.27573					49	19	4	0	0	0	0.9728	1	8757	8757		42.864	3.6114	1	1608000			534	5905	361	362	544	544					0.03036513017696052
AEQRRRWDND	10	Unmodified	_AEQRRRWDND_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.7718811035156	3	449.216713	1344.62831	0.3431	0.00015413	-0.41685	-0.00018726	-0.073749	-3.3129E-05	449.2163313141202	19.742	0.67736	19.581	19.331	20.009	-0.16079					27	13	3	0	0	0	0.03519	1	480	480		9.2118	0	1	144360			535	896	362	363	545	545					-0.030220391269949687
AEQSHVTW	8	Unmodified	_AEQSHVTW_					0	0	0			REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.78167724609375	2	479.224874	956.435195	-1.0355	-0.00049624	0.48095	0.00023048	-0.55456	-0.00026576	479.2247982613898	44.257	0.57479	44.013	43.751	44.326	-0.2444					37	15	3	0	0	0	0.027866	1	4068	4068		31.955	0	1	577520	+		536	26801	363	364	546	546					-0.04476549176104072
AEQWLDPTI	9	Unmodified	_AEQWLDPTI_					0	0	0			REV__POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	REV__POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7694702148438	2	536.769114	1071.52368	-0.25081	-0.00013463	-0.16895	-9.0685E-05	-0.41975	-0.00022531	536.7690121483112	87.089	0.9583	87.054	86.734	87.693	-0.035362					48	15	4	0	0	0	0.23085	2	10924	10924;10936		84.916	6.4121	1	4653300	+		537	20122	364	365	547;548	547					-0.009225536563008063
AEQYDPDW	8	Unmodified	_AEQYDPDW_					0	0	0			REV__APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	REV__APOBEC3G|p.E170Afs*3|1|0.24|ENSG00000239713|chr22:39081507-39081508|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.25341796875	2	512.206347	1022.39814	-0.66783	-0.00034207	-1.2524	-0.00064147	-1.9202	-0.00098353	512.204410994121	54.318	0.23361	54.182	54.021	54.255	-0.13617					12	6	3	0	0	0	0.027866	1	5752	5752		26.796	0	1	128640	+		538	19155	365	366	549	549					-0.11216265512530299
AERAGVAAEV	10	Unmodified	_AERAGVAAEV_					0	0	0			REV__TCHP|p.E240Gfs*40|1|0.2|ENSG00000139437|chr12:109908602-109908603|-/G|frameshift_variant	REV__TCHP|p.E240Gfs*40|1|0.2|ENSG00000139437|chr12:109908602-109908603|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.77716064453125	2	486.759081	971.503609	0.063316	3.0819E-05	-0.50649	-0.00024654	-0.44317	-0.00021572	486.75890855603717	41.656	0.42451	41.656	41.432	41.856	0					20	11	2	0	0	0	0.03519	1	3757	3757		107.01	18.365	1	134620	+		539	37682	366	367	550	550					0.01671695403740614
AERELQAKF	9	Unmodified	_AERELQAKF_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2944946289062	2	546.29583	1090.57711	-0.87742	-0.00047933	0.96953	0.00052965	0.092105	5.0316E-05	546.2962427701868	57.517	0.61776	57.339	57.096	57.714	-0.17775					35	15	3	0	0	0	0.013293	1	6282	6282		176.09	27.1	1	2461900			540	9557	367	368	551	551					0.03544243846204154
AERELQAKF	9	Unmodified	_AERELQAKF_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2952880859375	2	546.29583	1090.57711	-0.039734	-2.1707E-05	-0.019289	-1.0538E-05	-0.059024	-3.2244E-05	546.2957045784265	57.541	0.71687	57.351	57.112	57.829	-0.19018					46	18	3	0	0	0	0.01388	2	6295	6281;6295		180.87	48.112	1	2887100			541	9557	367	368	552;553	553					0.03544243846204154
AERELQAKF	9	Unmodified	_AERELQAKF_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2952270507812	2	546.29583	1090.57711	-0.98183	-0.00053637	0.88806	0.00048515	-0.093765	-5.1224E-05	546.2962998331574	57.66	0.75407	57.426	57.026	57.78	-0.23363					42	19	3	0	0	0	0.014988	1	6306	6306		161.9	3.8236	1	2172400			542	9557	367	368	554	554					0.03544243846204154
AERGRFLI	8	Unmodified	_AERGRFLI_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2977600097656	2	481.282526	960.550499	0.48478	0.00023332	-0.50151	-0.00024137	-0.016732	-8.0529E-06	481.2820786605133	19.137	0.54401	18.934	18.708	19.252	-0.20339					20	10	3	0	0	0	0.027866	1	399	399		45.952	0	1	95347			543	10918	368	369	555	555					0.06864599745563282
AERLGLRLVS	10	Unmodified	_AERLGLRLVS_					0	0	0			REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.8409423828125	2	557.340572	1112.66659	-0.057666	-3.2139E-05	4.335	0.0024161	4.2773	0.0023839	557.3428194038614	73.961	1.0389	73.696	73.406	74.445	-0.26479					56	26	3	0	0	0	0.72729	1	8742	8742		65.465	1.9315	1	3257900	+		544	35781	369	370	556	556					0.114764985255988
AERLLEPL	8	Unmodified	_AERLLEPL_					0	0	0			REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.77667236328125	2	470.776742	939.538931	-0.67768	-0.00031904	1.1122	0.00052361	0.43456	0.00020458	470.7770728124088	61.812	0.67417	61.634	61.329	62.003	-0.17781					38	16	3	0	0	0	0.5947	1	6926	6926		76.774	2.5191	1	1304000	+		545	22005	370	371	557	557					0.0667435793156983
AERLPEEEL	9	Unmodified	_AERLPEEEL_					0	0	0		ENST00000310645.9_1_21:47548903-47549056:+|nuORF	ENST00000310645.9_1_21:47548903-47549056:+|nuORF	ENST00000310645.9_1_21:47548903-47549056:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8314819335938	2	543.277303	1084.54005	-0.07999	-4.3457E-05	-1.8927	-0.0010283	-1.9727	-0.0010717	543.2759163166578	71.676	0.90921	71.676	71.145	72.054	0					47	23	3	0	0	0	0.024344	1	8637	8637		30.318	0	1	1296600			546	12065	371	372	558	558					0.001165275098173879
AERLTVIEI	9	Unmodified	_AERLTVIEI_					0	0	0			REV__nc|ENSG00000177548|Q9H5N1-2|RABEP2	REV__nc|ENSG00000177548|Q9H5N1-2|RABEP2	MSMS	OPSCC_39_ClassI_Rep-1	1	522.3095703125	2	522.308406	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.417	1	32.417	31.917	32.917	0								0	0	0	0.14599	1	2245	2245		82.241	2.5279	1		+		547	27123	372	373	559	559					0.0826629864880033
AERRKKEL	8	Unmodified	_AERRKKEL_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2;REV__ENST00000471482.5_1_2:172544095-172549436:+|nuORF	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2649536132812	2	515.311815	1028.60908	-1.0225	-0.00052691	-2.0767	-0.0010702	-3.0992	-0.0015971	515.3104184852564	61.974	0.25102	61.974	61.758	62.009	0					9	6	2	0	0	0	0.027866	1	7185	7185		87.754	8.0417	1	334660	+		548	20590;33177	373	374	560	560					0.09591656320048969
AERRKKEL	8	Unmodified	_AERRKKEL_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2;REV__ENST00000471482.5_1_2:172544095-172549436:+|nuORF	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.311815	1028.60908	-0.54239	-0.0002795	-2.1123	-0.0010885	-2.6547	-0.001368	515.3105091037565	62.189	0.28038	61.962	61.803	62.084	-0.22663	-0.014311	9.2117E-05	NaN	87.754	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143750	+		549	20590;33177	373	374							0.09591656320048969
AERRKKEL	8	Unmodified	_AERRKKEL_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2;REV__ENST00000471482.5_1_2:172544095-172549436:+|nuORF	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.311815	1028.60908	-1.2617	-0.00065014	-2.4444	-0.0012596	-3.706	-0.0019098	515.3105259693749	61.93	0.24596	61.992	61.842	62.087	0.062763	0.016239	-0.00025016	NaN	87.754	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208030	+		550	20590;33177	373	374							0.09591656320048969
AERRSLRA	8	Unmodified	_AERRSLRA_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2;ENST00000463491.1_1_20:35457204-35467793:-|nuORF	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.769287109375	2	479.780682	957.546811	0.69072	0.00033139	2.3227	0.0011144	3.0134	0.0014458	479.7812833533124	51.13	0.89148	51.13	50.775	51.667	0					37	24	3	0	0	0	0.027866	1	5489	5489		93.195	36.474	1	325730			551	6111	374	375	561	561					0.06633929971690122
AERRSLRA	8	Unmodified	_AERRSLRA_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2;ENST00000463491.1_1_20:35457204-35467793:-|nuORF	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.780682	957.546811	-0.24653	-0.00011828	3.1442	0.0015085	2.8977	0.0013903	479.7817938177041	51.298	0.743	51.149	50.897	51.64	-0.14916	0.015706	-0.0001892	NaN	93.195	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281610			552	6111	374	375							0.06633929971690122
AERSRNRVV	9	Unmodified	_AERSRNRVV_					0	0	0			REV__ENSG00000197728|ENST00000646449|RPS26	REV__ENSG00000197728|ENST00000646449|RPS26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.8013305664062	2	543.809971	1085.60539	-1.1315	-0.00061534	3.2894	0.0017888	2.1579	0.0011735	543.8117084505013	45.44	0.90863	45.229	44.715	45.624	-0.21109					39	25	3	0	0	0	0.024427	1	4306	4306		51.335	25.761	1	1560300	+		553	28341	375	376	562	562					0.06600986546163767
AERSWLYL	8	Unmodified	_AERSWLYL_					0	0	0		nc|ENSG00000133895|O00255-1|MEN1;ENSG00000133895|ENST00000450708|MEN1	nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-1|MEN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.3082275390625	2	519.274367	1036.53418	-0.28246	-0.00014668	2.9164	0.0015144	2.6339	0.0013677	519.276264496898	49.034	0.45428	49.034	48.795	49.249	0					20	12	3	0	0	0	0.027866	1	5068	5068		83.287	14.802	1	237630			554	4739	376	377	563	563					0.017374737888076197
AERVDNTF	8	Unmodified	_AERVDNTF_					0	0	0			REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2666320800781	2	476.230156	950.445759	-0.42754	-0.00020361	-1.032	-0.00049145	-1.4595	-0.00069506	476.22980965870994	31.653	0.39417	31.501	31.305	31.699	-0.15231					14	9	2	0	0	0	0.027866	1	2081	2081		60.294	2.4827	1	66966	+		555	21816	377	378	564	564					-0.03144566521677916
AERVGLAAL	9	Unmodified	_AERVGLAAL_					0	0	0		ENSG00000146282|ENST00000369536|RARS2;ENST00000497828.1_1_6:88228346-88228628:-|nuORF	ENSG00000146282|ENST00000369536|RARS2	ENSG00000146282|ENST00000369536|RARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2691955566406	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.18915	1	3161	3161		90.777	8.4716	1	125590000			556	5873	378	379	565	565					0.07029491134380805
AERVNLIKGRL	11	Unmodified	_AERVNLIKGRL_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	634.8924560546875	2	634.893503	1267.77245	0.41338	0.00026245	-1.871	-0.0011879	-1.4576	-0.00092541	634.8925865119255	104.35	1.0618	104.35	103.98	105.04	0					81	29	5	0	0	0	1.0344	1	13426	13426		29.17	1.0886	1	1987300	+		557	23231;20581	379	380	566	566					0.14927834371087556
AERVRALF	8	Unmodified	_AERVRALF_					0	0	0			REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.264404296875	2	481.282526	960.550499	-0.24572	-0.00011826	2.4784	0.0011928	2.2327	0.0010746	481.2837072721684	37.636	0.38538	37.636	37.45	37.836	0					18	10	2	0	0	0	0.027866	1	3096	3096		25.45	4.9683	1	178860	+		558	28653	380	381	567	567					0.06864599745551914
AERVRKLREER	11	Unmodified	_AERVRKLREER_					0	0	0		nc|ENSG00000169379|Q3SXY8-2|ARL13B;nc|ENSG00000169379|Q3SXY8-3|ARL13B;ENSG00000169379|ENST00000394222|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.28363037109375	3	481.283057	1440.82734	0.24413	0.0001175	0.55302	0.00026616	0.79715	0.00038365	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0379	1	12933	12933		28.384	0.73985	1	1053600			559	7934	381	382	568	568					0.12456221171669313
AESANPFQV	9	Unmodified	_AESANPFQV_					0	0	0			REV__nc|ENSG00000197381|P78563-3|ADARB1	REV__nc|ENSG00000197381|P78563-3|ADARB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7689514160156	2	481.732532	961.45051	-0.30414	-0.00014651	0.43245	0.00020833	0.12831	6.1813E-05	481.7326350334235	57.614	0.93732	57.38	56.843	57.78	-0.23363					55	24	3	0	0	0	0.024427	1	6277	6277		34.173	3.6689	1	1202700	+		560	37062	382	383	569	569					-0.031756823789010014
AESCINRLLN	10	Carbamidomethyl (C)	_AESC(Carbamidomethyl (C))INRLLN_	AESC(1)INRLLN		AESC(75)INRLLN		0	1	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.3031005859375	2	595.303329	1188.59211	-0.87409	-0.00052035	0.7432	0.00044243	-0.13089	-7.7917E-05	595.3037266176278	40.984	1.1786	40.849	40.561	41.74	-0.13553					68	30	4	0	0	0	0.61732	1	3577	3577		75.043	21.692	1	6027200	+		561	28927	383	384	570	570	380				0.005353676519462169
AESCINRLLN	10	Carbamidomethyl (C)	_AESC(Carbamidomethyl (C))INRLLN_	AESC(1)INRLLN		AESC(51)INRLLN		0	1	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.302978515625	2	595.303329	1188.59211	-0.89278	-0.00053148	0.57284	0.00034101	-0.31994	-0.00019046	595.3036846381788	41.192	1.047	40.964	40.69	41.737	-0.2278					72	26	5	0	0	0	0.94316	1	3595	3595		51.193	6.8155	1	6187600	+		562	28927	383	384	571	571	380				0.005353676519462169
AESCPGPTF	9	Unmodified	_AESCPGPTF_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2371520996094	2	454.694561	907.374568	0.45684	0.00020772	3.2436	0.0014748	3.7004	0.0016826	454.69590832418044	59.328	0.56419	59.147	58.831	59.395	-0.18134					22	13	2	0	0	0	0.024477	1	6545	6545		27.882	10.517	1	172550	+		563	23630	384	385	572	572					-0.0828240255068522
AESCPGPTF	9	Unmodified	_AESCPGPTF_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.694561	907.374568	1.9368	0.00088065	1.0899	0.00049556	3.0267	0.0013762	454.69527441858213	59.27	0.32205	59.083	58.936	59.258	-0.18705	-0.059681	-0.0017789	NaN	35.618	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79638	+		564	23630	384	385							-0.0828240255068522
AESKPFSFLF	10	Unmodified	_AESKPFSFLF_					0	0	0		ENST00000305883.5_1_2:10193335-10193581:+|nuORF	ENST00000305883.5_1_2:10193335-10193581:+|nuORF	ENST00000305883.5_1_2:10193335-10193581:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.7379760742188	2	586.802957	1171.59136	-1.1025	-0.00064694	-1.2156	-0.0007133	-2.318	-0.0013602	586.8020250827313	28.516	0.44968	28.364	28.162	28.612	-0.15195					17	10	2	0	0	0	0.03519	1	1684	1684		34.173	3.6689	1	119880			565	11993	385	386	573	573					0.012428962745161698
AESLKKKL	8	Unmodified	_AESLKKKL_					0	0	0			REV__ENSG00000148513|ENST00000361713|ANKRD30A	REV__ENSG00000148513|ENST00000361713|ANKRD30A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.26629638671875	2	458.794935	915.575317	-0.58748	-0.00026953	0.37655	0.00017276	-0.21093	-9.6774E-05	458.7949868501099	28.668	0.39023	28.499	28.294	28.685	-0.16897					12	8	2	0	0	0	0.027866	1	1672	1672		30.504	3.7075	1	88361	+		566	19142	386	387	574	574					0.11415234828268694
AESLSKVSF	9	Unmodified	_AESLSKVSF_					0	0	0			REV__nc|ENSG00000114770|O15440-5|ABCC5	REV__nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.268310546875	2	484.258382	966.502212	-0.26358	-0.00012764	0.06646	3.2184E-05	-0.19712	-9.5458E-05	484.25828942472253	46.324	0.82557	46.063	45.777	46.603	-0.26118					55	21	4	0	0	0	0.024354	1	4467	4467		47.916	3.7988	1	3068800	+		567	22142	387	388	575	575					0.017620613150029385
AESQDDDE	8	Unmodified	_AESQDDDE_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.6625671386719	2	454.659426	907.3043	0.20904	9.5041E-05	3.8935	0.0017702	4.1025	0.0018653	454.6625655336982	68.656	1.7912	68.426	67.715	69.506	-0.23048					156	43	5	0	0	0	1.0574	1	7951	7951		26.796	0	1	1243300	+		568	36745	388	389	576	576					-0.15306029405462596
AESQIRSE	8	Unmodified	_AESQIRSE_					0	0	0			REV__CYP2E1|p.R149S|1|0.45|ENSG00000130649|chr10:133531694-133531694|G/C|missense_variant	REV__CYP2E1|p.R149S|1|0.45|ENSG00000130649|chr10:133531694-133531694|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2411193847656	2	460.227613	918.440674	0.60985	0.00028067	4.0564	0.0018669	4.6662	0.0021475	460.2293435529689	53.924	0.52138	54.022	53.739	54.26	0.098015					37	14	3	0	0	0	0.027866	1	5822	5822		20.947	0	1	1420800	+		569	19642	389	390	577	577					-0.021808703842907562
AESQSEEQQE	10	Unmodified	_AESQSEEQQE_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.7388305664062	2	582.736197	1163.45784	-0.37321	-0.00021748	4.1793	0.0024354	3.806	0.0022179	582.7385775750014	66.629	0.55048	66.38	66.061	66.611	-0.24839					49	17	5	0	0	0	0.18511	5	7646	7635;7646;7658;7666;7669		122.94	39.401	1	7548700			570	6406	390	391	578;579;580;581;582	579					-0.11735039359791699
AESQSEEQQE	10	Unmodified	_AESQSEEQQE_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	582.736197	1163.45784	-1.3026	-0.0007591	5.3111	0.003095	4.0085	0.0023359	582.7391588821214	66.627	0.62627	66.404	66.066	66.692	-0.22374	0.0085415	0.00056638	NaN	122.94	53	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6597400			571	6406	390	391							-0.11735039359791699
AESQSEEQQE	10	Unmodified	_AESQSEEQQE_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	582.736197	1163.45784	-0.94751	-0.00055215	4.9782	0.002901	4.0307	0.0023488	582.7389270539771	66.647	0.74976	66.402	65.891	66.64	-0.24517	0.0064978	0.00017833	NaN	122.94	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6967600			572	6406	390	391							-0.11735039359791699
AESSSSKLTD	10	Unmodified	_AESSSSKLTD_					0	0	0		ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.76904296875	2	512.743293	1023.47203	-0.76126	-0.00039033	4.2495	0.0021789	3.4883	0.0017886	512.7454515779931	86.428	0.51949	86.451	86.202	86.722	0.023666					20	11	2	0	0	0	0.03519	1	10756	10756		67.494	10.773	1	120660			573	2202	391	392	583	583					-0.03876342140847555
AESSTDSSGPL	11	Unmodified	_AESSTDSSGPL_					0	0	0		nc|ENSG00000107551|Q9H2L5-3|RASSF4;ENSG00000107551|ENST00000340258|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF	nc|ENSG00000107551|Q9H2L5-3|RASSF4	nc|ENSG00000107551|Q9H2L5-3|RASSF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7328491210938	2	525.732926	1049.4513	-1.6521	-0.00086857	1.6739	0.00088004	0.021812	1.1467E-05	525.7337586168185	43.781	0.95109	43.781	43.296	44.247	0					65	26	4	0	0	0	0.6558	1	4131	4131		66.429	0.6261	1	3735100			574	2841	392	393	584	584					-0.07144932520509428
AESTTAWQ	8	Unmodified	_AESTTAWQ_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|7|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|7|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|7|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.7377624511719	2	447.203607	892.392661	0.23103	0.00010332	4.2977	0.0019219	4.5287	0.0020253	447.2054298684886	40.158	1.9066	40.046	39.568	41.475	-0.11223					69	52	2	0	0	0	0.027866	1	3729	3729		40.573	10.069	1	158550			575	17888	393	394	585	585					-0.05783944304334909
AESWASKEC	9	Unmodified	_AESWASKEC_					0	0	0		ENST00000454558.2_2_2:97203163-97203835:+|nuORF	ENST00000454558.2_2_2:97203163-97203835:+|nuORF	ENST00000454558.2_2_2:97203163-97203835:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7139587402344	2	505.716024	1009.4175	-0.59654	-0.00030168	-3.0847	-0.00156	-3.6813	-0.0018617	505.71448929860196	29.203	1.6572	29.03	28.003	29.66	-0.17258					107	38	5	0	0	0	0.67687	1	1776	1776		47.657	1.7054	1	1697700			576	14566	394	395	586	586					-0.08683632493261939
AESWDVLNI	9	Unmodified	_AESWDVLNI_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8390502929688	2	523.761289	1045.50803	-0.16697	-8.7451E-05	0.31535	0.00016517	0.14838	7.7718E-05	523.7614695357287	61.29	0.59602	61.063	60.899	61.495	-0.22663					24	15	2	0	0	0	0.024427	1	7051	7051		34.173	0	1	180070	+		577	23532	395	396	587	587					-0.01290840173351171
AESYESIRQ	9	Unmodified	_AESYESIRQ_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3114013671875	2	541.759278	1081.504	-0.38132	-0.00020659	2.1012	0.0011383	1.7199	0.00093176	541.7594244986004	40.478	0.24245	40.478	40.414	40.657	0					9	6	2	0	0	0	0.024457	1	3593	3593		37.159	11.709	1	155820	+		578	24436	396	397	588	588					-0.03348929667072298
AETALKPEAQP	11	Unmodified	_AETALKPEAQP_					0	0	0			REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2288208007812	2	577.806228	1153.5979	-0.23864	-0.00013789	0.59663	0.00034473	0.35799	0.00020685	577.8066227755933	73.429	0.77925	73.152	72.626	73.405	-0.2769					25	18	2	0	0	0	0.024731	1	8652	8652		16.007	3.1951	1	201690	+		579	27404	397	398	589	589					0.02724789435205821
AETAVQLFI	9	Unmodified	_AETAVQLFI_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.27642822265625	2	496.276575	990.538597	1.112	0.00055186	-1.0013	-0.0004969	0.11074	5.4955E-05	496.27593164611517	85.007	1.08	85.007	84.628	85.708	0					73	25	5	0	0	0	0.015901	1	10647	10647		157.33	18.849	1	3635600			580	3833	398	399	590	590					0.04294938211717181
AETAVQLFI	9	Unmodified	_AETAVQLFI_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2766418457031	2	496.276575	990.538597	-0.49769	-0.00024699	0.5293	0.00026268	0.03161	1.5687E-05	496.27668768819393	84.976	1.1203	84.918	84.442	85.563	-0.05761					74	26	4	0	0	0	0.01452	2	10624	10612;10624		186.09	65.468	1	3718700			581	3833	398	399	591;592	592					0.04294938211717181
AETAVQLFI	9	Unmodified	_AETAVQLFI_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.27655029296875	2	496.276575	990.538597	-0.35022	-0.00017381	0.37918	0.00018818	0.028953	1.4369E-05	496.27663212564676	84.907	1.1216	84.933	84.537	85.659	0.025536					75	26	4	0	0	0	0.028071	3	10571	10559;10571;10586		143.11	40.804	1	3867100			582	3833	398	399	593;594;595	594					0.04294938211717181
AETERKKAL	9	Unmodified	_AETERKKAL_					0	0	0		ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	ENSG00000147475|ENST00000519638|ERLIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.30322265625	2	523.303655	1044.59276	-0.30343	-0.00015878	-0.91784	-0.00048031	-1.2213	-0.00063909	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.80003	1	11103	11103		39.253	2.8061	1	11993000			583	5971	399	400	596	596					0.07224530363282611
AETFLDSE	8	Unmodified	_AETFLDSE_					0	0	0			REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2613525390625	2	456.203273	910.391992	-0.70676	-0.00032243	3.2293	0.0014732	2.5225	0.0011508	456.2042141186156	29.6	0.63141	29.427	29.156	29.787	-0.17258					29	14	3	0	0	0	0.027866	1	1791	1791		12.959	0	1	202450	+		584	20999	400	401	597	597					-0.06678783744041539
AETLEDLDL	9	Unmodified	_AETLEDLDL_					0	0	0		ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2943420410156	2	509.750587	1017.48662	1.5878	0.0008094	3.3744	0.0017201	4.9622	0.0025295	509.75185232076103	63.734	0.35588	63.787	63.591	63.947	0.053425					14	9	2	0	0	0	0.023181	1	7369	7369		82.305	18.098	1	131950			585	4187	401	402	598	598					-0.021422699927029498
AETQIPKIN	9	Unmodified	_AETQIPKIN_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.764404296875	2	507.284931	1012.55531	-1.0065	-0.00051058	1.8095	0.00091795	0.80305	0.00040737	507.2856571911894	39.471	1.265	39.372	38.843	40.108	-0.098751					55	34	3	0	0	0	0.024323	1	3329	3329		44.117	1.7207	1	350110	+		586	20717	402	403	599	599					0.04953439097664614
AETQIPKIN	9	Unmodified	_AETQIPKIN_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.284931	1012.55531	-0.83539	-0.00042378	1.7397	0.0008825	0.90426	0.00045872	507.2856933040416	39.7	0.89109	39.724	39.421	40.312	0.023727	0.12497	0.00089351	NaN	44.117	43	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366080	+		587	20717	402	403							0.04953439097664614
AETRRAGE	8	Unmodified	_AETRRAGE_					0	0	0		ENST00000397128.6_1_5:40798202-40798274:-|nuORF	ENST00000397128.6_1_5:40798202-40798274:-|nuORF	ENST00000397128.6_1_5:40798202-40798274:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.2283935546875	2	445.227948	888.441343	-0.72927	-0.00032469	0.87731	0.0003906	0.14804	6.5912E-05	445.2282174360294	26.285	1.5865	26.049	25.843	27.429	-0.23603					91	40	4	0	0	0	1.0009	1	1358	1358		37.159	2.9866	1	3852200			588	13582	403	404	600	600					-0.007340309445680759
AETVALVLLY	10	Unmodified	_AETVALVLLY_					0	0	0			REV__ENSG00000149735|ENST00000279168|GPHA2	REV__ENSG00000149735|ENST00000279168|GPHA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2760620117188	2	546.320983	1090.62741	-0.40895	-0.00022342	0.18044	9.858E-05	-0.22851	-0.00012484	546.321264502512	78.357	0.25395	78.201	78	78.254	-0.15591					8	5	2	0	0	0	0.03519	1	9328	9328		29.15	9.1528	1	48926	+		589	24698	404	405	601	601					0.08572353451381787
AETVALVLLY	10	Unmodified	_AETVALVLLY_					0	0	0			REV__ENSG00000149735|ENST00000279168|GPHA2	REV__ENSG00000149735|ENST00000279168|GPHA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.320983	1090.62741	0.16198	8.8493E-05	-1.7341	-0.00094738	-1.5721	-0.00085888	546.3196318256065	78.42	0.42683	78.189	78.006	78.433	-0.23141	-0.0060503	-0.00085663	NaN	29.15	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83618	+		590	24698	404	405							0.08572353451381787
AEVEDIDL	8	Unmodified	_AEVEDIDL_					0	0	0			REV__ENSG00000178988|ENST00000320848|MRFAP1L1	REV__ENSG00000178988|ENST00000320848|MRFAP1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2477722167969	2	452.218923	902.423293	0.725	0.00032786	-2.3167	-0.0010477	-1.5917	-0.00071981	452.21801316365736	33.206	0.21001	33.262	33.176	33.386	0.056572					12	5	3	0	0	0	0.027866	1	2332	2332		23.042	0	1	127190	+		591	27222	405	406	602	602					-0.03182210709951505
AEVEHLTEV	9	Unmodified	_AEVEHLTEV_					0	0	0		ENSG00000163006|ENST00000295124|CCDC138;nc|ENSG00000163006|Q96M89-2|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8252563476562	2	513.758746	1025.50294	-1.1397	-0.00058555	-3.7787	-0.0019413	-4.9184	-0.0025269	513.7563157661573	39.788	0.32136	39.676	39.432	39.754	-0.11223					10	8	2	0	0	0	0.024381	1	3441	3441		37.159	0	1	61211			592	7024	406	407	603	603					-0.008791440359573244
AEVEKLKL	8	Unmodified	_AEVEKLKL_					0	0	0			REV__TCHP|p.E240Gfs*40|1|0.2|ENSG00000139437|chr12:109908602-109908603|-/G|frameshift_variant	REV__TCHP|p.E240Gfs*40|1|0.2|ENSG00000139437|chr12:109908602-109908603|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.2870178222656	2	465.286943	928.559333	0.077311	3.5972E-05	-1.4983	-0.00069716	-1.421	-0.00066119	465.2866194747693	75.428	2.5337	75.253	74.359	76.892	-0.17548					193	61	5	0	0	0	0.44952	1	8906	8906		90.37	2.6734	1	119020000	+		593	37682	407	408	604	604					0.09219528591370363
AEVERQKYKTL	11	Unmodified	_AEVERQKYKTL_					0	0	0		ENST00000478112.1_1_10:71211350-71243770:+|nuORF;ENSG00000099282|ENST00000373290|TSPAN15	ENST00000478112.1_1_10:71211350-71243770:+|nuORF	ENST00000478112.1_1_10:71211350-71243770:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7931823730469	3	455.589265	1363.74596	3.9252	0.0017883	-3.7667	-0.0017161	0.15843	7.2179E-05	455.58728259815024	17.901	0.34167	17.901	17.697	18.038	0					15	6	3	0	0	0	0.024809	1	207	207		22.562	5.3948	1	24506			594	2067	408	409	605	605					0.07864100689084808
AEVETGRTTP	10	Unmodified	_AEVETGRTTP_					0	0	0		EXOC3L1|p.R476Sfs*111|1|0.44|ENSG00000179044|chr16:67186269-67186305|TAGGTAGGGCACGTAATGAGGGGCCATTGATTTCCCC/-|frameshift_variant;ENSG00000179044|ENST00000314586|EXOC3L1	EXOC3L1|p.R476Sfs*111|1|0.44|ENSG00000179044|chr16:67186269-67186305|TAGGTAGGGCACGTAATGAGGGGCCATTGATTTCCCC/-|frameshift_variant	EXOC3L1|p.R476Sfs*111|1|0.44|ENSG00000179044|chr16:67186269-67186305|TAGGTAGGGCACGTAATGAGGGGCCATTGATTTCCCC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2810668945312	2	530.767103	1059.51965	0.062212	3.302E-05	2.0785	0.0011032	2.1408	0.0011362	531.2703106812248	59.633	0.4749	59.384	59.211	59.686	-0.24842					27	11	3	0	0	0	0.03519	1	6625	6625		39.253	11.371	1	107790			595	8863	409	410	606	606					-0.007726431500032049
AEVILLVVM	9	Unmodified	_AEVILLVVM_					0	0	0		ENSG00000181958|ENST00000641526|OR4A15;nc|ENSG00000181958|Q8NGL6|OR4A15	ENSG00000181958|ENST00000641526|OR4A15	ENSG00000181958|ENST00000641526|OR4A15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3296203613281	2	493.801371	985.58819	-0.096446	-4.7625E-05	-0.90819	-0.00044846	-1.0046	-0.00049609	493.80038159126985	24.047	0.98614	23.867	23.563	24.549	-0.17989					32	22	3	0	0	0	0.024412	1	1047	1047		50.025	18.07	1	137260			596	9084	410	411	607	607					0.09481929896151087
AEVLALAIFL	10	Unmodified	_AEVLALAIFL_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.825927734375	2	530.326068	1058.63758	-0.73847	-0.00039163	-3.4455	-0.0018272	-4.184	-0.0022189	530.3243379564994	68.571	0.7268	68.309	68.063	68.789	-0.26166					26	17	2	0	0	0	0.03519	1	7930	7930		44.117	0	1	667590	+		597	24071	411	412	608	608					0.11060961176599449
AEVLGSQLLL	10	Unmodified	_AEVLGSQLLL_					0	0	0			REV__ENST00000475645.1_1_6:106634320-106634398:-|nuORF	REV__ENST00000475645.1_1_6:106634320-106634398:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.2472534179688	2	521.810782	1041.60701	0.107	5.5834E-05	-0.60481	-0.0003156	-0.49781	-0.00025976	521.8103654202245	83.345	0.72252	83.207	82.824	83.547	-0.1386					31	16	3	0	0	0	0.03519	1	10066	10066		49.536	10.73	1	211800	+		598	33298	412	413	609	609					0.08787182791570558
AEVLLHPGNEA	11	Unmodified	_AEVLLHPGNEA_					0	0	0			REV__ENSG00000145681|ENST00000274341|HAPLN1	REV__ENSG00000145681|ENST00000274341|HAPLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.2971801757812	2	575.29857	1148.58259	-1.9701	-0.0011334	0.25077	0.00014427	-1.7193	-0.0009891	575.2985406757246	43.929	0.75883	43.929	43.658	44.417	0					54	21	4	0	0	0	1.0238	1	4162	4162		31.53	1.2121	1	3506200	+		599	24422	413	414	610	610					0.014239226380595937
AEVMQPTR	8	Unmodified	_AEVMQPTR_					0	0	0		ENST00000380918.7_1_5:65440973-65454737:+|nuORF	ENST00000380918.7_1_5:65440973-65454737:+|nuORF	ENST00000380918.7_1_5:65440973-65454737:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2686767578125	2	466.236927	930.459301	0.1701	7.9306E-05	-0.13969	-6.5126E-05	0.030413	1.418E-05	466.236708277449	41.504	1.6133	41.381	40.51	42.124	-0.12317					85	45	2	0	0	0	0.027866	1	3832	3832		37.159	6.6555	1	449320			600	13325	414	415	611	611					-0.008710320140721706
AEVPAKAALF	10	Unmodified	_AEVPAKAALF_					0	0	0		ENST00000553338.1_1_14:76452564-76488738:+|nuORF	ENST00000553338.1_1_14:76452564-76488738:+|nuORF	ENST00000553338.1_1_14:76452564-76488738:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2762145996094	2	508.792392	1015.57023	0.63204	0.00032157	0.84555	0.00043021	1.4776	0.00075178	508.79260061401874	71.431	0.46684	71.142	70.96	71.427	-0.28857					20	11	2	0	0	0	0.03519	1	8602	8602		37.812	0	1	369250			601	16636	415	416	612	612					0.06306930965649826
AEVPVLQIVPV	11	Unmodified	_AEVPVLQIVPV_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3531494140625	2	582.355357	1162.69616	0.45576	0.00026541	-3.8351	-0.0022334	-3.3793	-0.001968	582.3530460378859	102.36	1.1668	102.35	101.97	103.14	-0.0054474					95	27	7	0	0	0	1.0483	1	13068	13068		25.574	0	1	8508600			602	1745	416	417	613	613					0.1213201775105972
AEVRGAFA	8	Unmodified	_AEVRGAFA_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.71868896484375	2	410.719227	819.423902	0.44315	0.00018201	-1.4011	-0.00057547	-0.95797	-0.00039345	410.7185615601089	96.027	1.7726	95.89	95.331	97.104	-0.1367					105	40	4	0	0	0	1.0574	1	11878	11878		25.45	1.2474	1	2186500			603	4051;3357	417	418	614	614					0.006966735204287033
AEVSWQPSL	9	Unmodified	_AEVSWQPSL_					0	0	0		ENST00000328089.10_1_1:9353094-9415933:+|nuORF	ENST00000328089.10_1_1:9353094-9415933:+|nuORF	ENST00000328089.10_1_1:9353094-9415933:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.75238037109375	2	508.756007	1015.49746	-0.89617	-0.00045593	-2.94	-0.0014957	-3.8362	-0.0019517	508.75441476609154	43.697	0.71623	43.552	43.241	43.958	-0.14471					45	19	3	0	0	0	0.50848	1	4095	4095		58.782	9.3404	1	3594900			604	12299	418	419	615	615					-0.00966822827751912
AEVSWQPSL	9	Unmodified	_AEVSWQPSL_					0	0	0		ENST00000328089.10_1_1:9353094-9415933:+|nuORF	ENST00000328089.10_1_1:9353094-9415933:+|nuORF	ENST00000328089.10_1_1:9353094-9415933:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7524108886719	2	508.756007	1015.49746	-0.023228	-1.1817E-05	-3.839	-0.0019531	-3.8623	-0.001965	508.75396392382237	43.57	0.86941	43.601	43.267	44.136	0.030827					56	23	3	0	0	0	0.5973	1	4045	4045		52.937	1.6012	1	3441400			605	12299	418	419	616	616					-0.00966822827751912
AEVTGYFPL	9	Unmodified	_AEVTGYFPL_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.3197021484375	2	498.755475	995.496398	0.59539	0.00029695	3.7219	0.0018563	4.3173	0.0021533	498.7570389866968	96.638	0.52802	96.644	96.397	96.925	0.0065079					14	11	2	0	0	0	0.024412	1	12301	12301		31.955	0	1	55184			606	8136	419	420	617	617					-0.0015303719667372206
AEVVKSPPCTL	11	Unmodified	_AEVVKSPPCTL_					0	0	0			REV__ENST00000502488.1_1_4:106447966-106448143:-|nuORF	REV__ENST00000502488.1_1_4:106447966-106448143:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.3060302734375	2	572.307549	1142.60055	-0.48405	-0.00027703	0.95996	0.00054939	0.4759	0.00027236	572.3078343436534	105.18	1.775	105.18	104.07	105.85	0					75	49	3	0	0	0	0.93459	1	13484	13484		49.536	0.094497	1	467390	+		607	33930	420	421	618	618					0.034949215685401214
AEVVKWPK	8	Unmodified	_AEVVKWPK_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7611389160156	2	478.781828	955.549102	-0.033586	-1.608E-05	2.4087	0.0011532	2.3751	0.0011372	478.78499634478493	33.72	0.30913	33.715	33.599	33.908	-0.0045624					11	7	2	0	0	0	0.027866	1	2473	2473		40.573	13.777	1	47724	+		608	27297	421	422	619	619					0.0695496565680287
AEVYHATQV	9	Unmodified	_AEVYHATQV_					0	0	0			REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2803955078125	2	509.253631	1016.49271	-0.69518	-0.00035402	-1.0085	-0.0005136	-1.7037	-0.00086762	509.7534776983107	48.172	0.51213	48.019	47.957	48.469	-0.15301					19	14	2	0	0	0	0.024323	1	4874	4874		44.117	0	1	143300	+		609	37185	422	423	620	620					-0.014877069705335089
AEWFHKLN	8	Unmodified	_AEWFHKLN_					0	0	0			REV__ENST00000549454.5_1_12:79320434-79371593:+|nuORF	REV__ENST00000549454.5_1_12:79320434-79371593:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3330078125	2	522.766709	1043.51886	-0.65447	-0.00034213	-1.9016	-0.00099409	-2.5561	-0.0013362	522.765662771842	83.663	0.38586	83.573	83.427	83.813	-0.090454					11	8	2	0	0	0	0.027866	1	10416	10416		30.504	0	1	67498	+		610	34893	423	424	621	621					-0.0011539300837739574
AEWGLASPQ	9	Unmodified	_AEWGLASPQ_					0	0	0		ENST00000497495.1_1_3:112993349-112998152:+|nuORF	ENST00000497495.1_1_3:112993349-112998152:+|nuORF	ENST00000497495.1_1_3:112993349-112998152:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7353515625	2	479.735074	957.455596	1.0655	0.00051115	-0.68576	-0.00032898	0.37972	0.00018216	479.7344760086726	60.053	1.9295	59.856	59.38	61.309	-0.19742					134	48	5	0	0	0	0.20967	1	6647	6647		87.754	1.8925	1	22815000			611	15595	424	425	622	622					-0.024833785162854838
AEWGLASPQ	9	Unmodified	_AEWGLASPQ_					0	0	0		ENST00000497495.1_1_3:112993349-112998152:+|nuORF	ENST00000497495.1_1_3:112993349-112998152:+|nuORF	ENST00000497495.1_1_3:112993349-112998152:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.73529052734375	2	479.735074	957.455596	-0.026737	-1.2827E-05	0.37835	0.00018151	0.35161	0.00016868	479.7350141799181	60.004	2.0545	59.827	59.401	61.455	-0.1761					147	51	6	0	0	0	0.32811	1	6631	6631		71.877	15.156	1	26409000			612	15595	424	425	623	623					-0.024833785162854838
AEWGPLHL	8	Unmodified	_AEWGPLHL_					0	0	0			REV__ENST00000507479.5_1_4:186317245-186317479:+|nuORF	REV__ENST00000507479.5_1_4:186317245-186317479:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7591552734375	2	461.742702	921.470852	0.13555	6.2591E-05	-2.9729	-0.0013727	-2.8373	-0.0013101	461.73973489388766	30.655	0.58673	30.729	30.667	31.254	0.074314					22	13	2	0	0	0	0.027866	1	1951	1951		42.474	3.6683	1	170030	+		613	34047	425	426	624	624					0.006975330715704331
AEWGTTTTP	9	Unmodified	_AEWGTTTTP_					0	0	0			REV__ENST00000398372.2_1_2:26372115-26372244:+|nuORF	REV__ENST00000398372.2_1_2:26372115-26372244:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.21942138671875	2	482.224539	962.434526	0.037509	1.8088E-05	3.5633	0.0017183	3.6008	0.0017364	482.2259474732722	31.881	1.1399	31.696	31.245	32.385	-0.18503					41	26	2	0	0	0	0.024436	1	2227	2227		23.042	0	1	72433	+		614	31800	426	427	625	625					-0.04819388615828757
AEWKDSLN	8	Unmodified	_AEWKDSLN_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.E1781K|1|0.31|ENSG00000173898|chr11:66691508-66691508|C/T|missense_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.732177734375	2	481.732532	961.45051	0.1118	5.3858E-05	-0.19099	-9.2004E-05	-0.079185	-3.8146E-05	481.73241627706994	57.282	2.588	57.282	56.745	59.333	0					166	70	5	0	0	0	0.62178	1	6410	6410		74.255	0.28031	1	18734000			615	8423	427	428	626	626					-0.031756823789010014
AEWKDSLN	8	Unmodified	_AEWKDSLN_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.E1781K|1|0.31|ENSG00000173898|chr11:66691508-66691508|C/T|missense_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.7321472167969	2	481.732532	961.45051	0.42998	0.00020713	-0.62961	-0.00030331	-0.19964	-9.6171E-05	481.7322445153537	57.458	2.5706	57.283	56.7	59.27	-0.1749					147	70	5	0	0	0	0.50717	1	6398	6398		84.916	9.8722	1	19184000			616	8423	427	428	627	627					-0.031756823789010014
AEWKEKAIK	9	Unmodified	_AEWKEKAIK_					0	0	0		nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496|CLTA;nc|ENSG00000122705|P09496-5|CLTA;ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-3|CLTA	nc|ENSG00000122705|P09496-4|CLTA	nc|ENSG00000122705|P09496-4|CLTA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.816162109375	2	551.816399	1101.61824	-0.53514	-0.0002953	2.0008	0.001104	1.4656	0.00080875	551.8173634686718	93.296	0.80151	93.304	92.971	93.773	0.0077286					49	18	4	0	0	0	0.32811	1	11777	11777		71.877	15.156	1	938900			617	18230	428	429	628	628					0.07150004885670569
AEWKRVLL	8	Unmodified	_AEWKRVLL_					0	0	0		ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENST00000511295.1_1_4:120986776-120987958:-|nuORF	ENST00000511295.1_1_4:120986776-120987958:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2795104980469	2	507.808377	1013.6022	-0.61855	-0.0003141	3.1737	0.0016116	2.5551	0.0012975	508.31108945062994	48.001	0.28526	47.848	47.606	47.891	-0.15301					12	8	3	0	0	0	0.027866	1	4839	4839		20.482	0	1	166530			618	15833	429	430	629	629					0.09594343439471231
AEWLSHTE	8	Unmodified	_AEWLSHTE_					0	0	0			REV__ENSG00000205078|ENST00000378644|SYCE1L	REV__ENSG00000205078|ENST00000378644|SYCE1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.724365234375	2	486.724707	971.43486	-0.13061	-6.3573E-05	-0.33036	-0.00016079	-0.46097	-0.00022437	486.72452216992014	100.34	0.57467	100.33	100.04	100.62	-0.0050812					31	15	4	0	0	0	0.91239	1	12738	12738		50.025	0.58299	1	312780	+		619	28657	430	431	630	630					-0.05199968895942675
AEWRFLLTG	9	Unmodified	_AEWRFLLTG_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7794799804688	2	546.795466	1091.57638	-1.187	-0.00064902	-0.76418	-0.00041785	-1.9511	-0.0010669	546.7941093335077	73.25	0.18039	73.25	73.182	73.362	0					5	4	2	0	0	0	0.023635	1	8938	8938		76.774	0	1	85621			620	3717	431	432	631	631					0.03425449197175112
AEWWPAEP	8	Unmodified	_AEWWPAEP_					0	0	0			REV__ENSG00000125731|ENST00000245908|SH2D3A	REV__ENSG00000125731|ENST00000245908|SH2D3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.29779052734375	2	493.224342	984.434132	-0.69023	-0.00034044	0.79375	0.00039149	0.10352	5.1056E-05	493.2246523770337	60.587	0.40174	60.587	60.366	60.768	0					15	10	2	0	0	0	0.027866	1	6970	6970		52.299	0	1	149920	+		621	22836	432	433	632	632					-0.05870763544999136
AEWWPAEP	8	Unmodified	_AEWWPAEP_					0	0	0			REV__ENSG00000125731|ENST00000245908|SH2D3A	REV__ENSG00000125731|ENST00000245908|SH2D3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2984313964844	2	493.224342	984.434132	-0.64191	-0.00031661	0.76437	0.000377	0.12245	6.0397E-05	493.22469761783424	60.838	0.41629	60.625	60.457	60.873	-0.21339					16	10	2	0	0	0	0.027866	1	6977	6977		68.485	7.5128	1	237860	+		622	22836	432	433	633	633					-0.05870763544999136
AEWWPAEP	8	Unmodified	_AEWWPAEP_					0	0	0			REV__ENSG00000125731|ENST00000245908|SH2D3A	REV__ENSG00000125731|ENST00000245908|SH2D3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2979736328125	2	493.224342	984.434132	-1.6872	-0.00083217	2.5946	0.0012797	0.90737	0.00044754	493.2253830842822	60.55	0.48646	60.629	60.392	60.879	0.078884					20	12	2	0	0	0	0.027866	1	6882	6882		68.485	22.512	1	176920	+		623	22836	432	433	634	634					-0.05870763544999136
AEYAANITKSV	11	Unmodified	_AEYAANITKSV_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.248779296875	2	583.806228	1165.5979	0.22655	0.00013226	-2.523	-0.0014729	-2.2964	-0.0013407	583.8047022088246	80.023	0.66898	79.776	79.405	80.074	-0.2465					21	15	2	0	0	0	0.024745	1	9608	9608		49.536	16.724	1	191330			624	5286	433	434	635	635					0.021727894352125077
AEYAANITKSV	11	Unmodified	_AEYAANITKSV_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.2484130859375	2	583.806228	1165.5979	-0.43475	-0.00025381	-2.2467	-0.0013116	-2.6814	-0.0015654	583.8050147447213	79.868	0.83811	79.718	79.152	79.99	-0.15051					27	19	2	0	0	0	0.024759	1	9579	9579		56.434	19.987	1	169670			625	5286	433	434	636	636					0.021727894352125077
AEYCPAYGPP	10	Unmodified	_AEYCPAYGPP_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7516479492188	2	534.228768	1066.44298	-0.61764	-0.00032996	0.90488	0.00048341	0.28724	0.00015345	534.2287563907445	39.695	0.65527	39.465	39.275	39.93	-0.23021					29	16	2	0	0	0	0.03519	1	3409	3409		40.573	12.69	1	186440	+		626	28441	434	435	637	637					-0.08758157970851244
AEYFDESLV	9	Unmodified	_AEYFDESLV_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;ENSG00000175229|ENST00000312006|GAL3ST3;ENSG00000197093|ENST00000360039|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.802734375	2	536.745305	1071.47606	0.17349	9.3118E-05	-1.7238	-0.00092524	-1.5503	-0.00083213	536.7458415801926	65.894	0.38443	65.894	65.76	66.145	0					9	7	2	0	0	0	0.024294	1	7866	7866		37.159	0	1	175700			627	14029	435	436	638	638					-0.05682252647147834
AFAAIYSKGGI	11	Unmodified	_AFAAIYSKGGI_					0	0	0		nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL	nc|ENSG00000163138|Q8N7B6-2|PACRGL	nc|ENSG00000163138|Q8N7B6-2|PACRGL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3020629882812	2	549.303124	1096.5917	0.15773	8.6641E-05	-0.30673	-0.00016849	-0.14901	-8.1849E-05	549.3028459741538	78.773	1.2201	78.541	78.303	79.523	-0.23141					58	28	5	0	0	0	0.87847	1	9401	9401		52.937	1.6012	1	1771100			628	7041	436	437	639	639					0.047263159943895516
AFAITVSMIF	10	Unmodified	_AFAITVSMIF_					0	0	0			REV__ENSG00000168944|ENST00000306467|CEP120	REV__ENSG00000168944|ENST00000306467|CEP120	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2809448242188	2	550.296453	1098.57835	0.11352	6.2471E-05	-4.3655	-0.0024023	-4.252	-0.0023398	550.7955498309294	53.192	0.425	53.065	52.792	53.217	-0.12705					13	10	2	0	0	0	0.03519	1	5526	5526		23.042	0	1	99973	+		629	26305	437	438	640	640					0.033007418907800457
AFCALHGMKK	10	Unmodified	_AFCALHGMKK_					0	0	0			REV__ENSG00000198162|ENST00000356554|MAN1A2	REV__ENSG00000198162|ENST00000356554|MAN1A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.3141479492188	2	553.285897	1104.55724	3.9432	0.0021817	-2.4985	-0.0013824	1.4447	0.00079934	553.284492403708	18.413	0.42689	18.476	18.222	18.649	0.063307					13	8	2	0	0	0	1.1129	1	266	266		17.365	2.5001	1	26484	+		630	28392	438	439	641	641					0.009144533102926289
AFCTRLLTL	9	Unmodified	_AFCTRLLTL_					0	0	0		ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7689208984375	2	519.294245	1036.57394	0.80953	0.00042039	1.4731	0.00076498	2.2826	0.0011854	519.2950304847446	70.956	0.50119	70.663	70.455	70.956	-0.29292					15	11	2	0	0	0	0.024344	1	8522	8522		54.776	6.8607	1	167990			631	11047	439	440	642	642					0.05711277467889886
AFDFGKAW	8	Unmodified	_AFDFGKAW_					0	0	0		ENST00000289081.7_1_9:97861636-97862104:-|nuORF	ENST00000289081.7_1_9:97861636-97862104:-|nuORF	ENST00000289081.7_1_9:97861636-97862104:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2901611328125	2	471.229428	940.444303	-0.17028	-8.024E-05	-0.58686	-0.00027655	-0.75714	-0.00035679	471.2291204497931	29.433	3.3288	29.436	27.662	30.99	0.0031376					137	81	2	0	0	0	0.027866	1	1600	1600		47.916	9.1095	1	639050			632	11775	440	441	643	643					-0.02830155819765423
AFDLLNLN	8	Unmodified	_AFDLLNLN_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000491997.2_1_13:51997202-52025480:-|nuORF;nc|ENSG00000102786|Q9UL03-2|INTS6;ENST00000486195.6_1_13:51961577-52026149:-|nuORF;ENST00000491723.5_1_13:51995314-52026679:-|nuORF;ENST00000504674.1_1_5:39720798-39721572:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2486572265625	2	460.247818	918.481082	0.876	0.00040318	-0.71224	-0.00032781	0.16376	7.5371E-05	460.24739003544744	71.004	1.4212	71.004	70.483	71.904	0					87	35	4	0	0	0	0.6536	1	8622	8622		71.296	2.811	1	6287900			633	2428	441	442	644	644					0.018580960061285623
AFFLSGSKKA	10	Unmodified	_AFFLSGSKKA_					0	0	0		nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2;nc|ENSG00000006576|Q8N3S3-4|PHTF2;ENST00000454592.5_1_7:77538159-77567164:+|nuORF;nc|ENSG00000006576|Q8N3S3-7|PHTF2;nc|ENSG00000006576|Q8N3S3-6|PHTF2;nc|ENSG00000006576|Q8N3S3-5|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-6|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.296875	2	528.297842	1054.58113	-0.91589	-0.00048386	1.0769	0.00056893	0.16103	8.507E-05	528.8004026006176	56.225	0.27823	56.225	55.999	56.277	0					11	7	2	0	0	0	0.03519	1	6233	6233		26.693	3.6504	1	119950			634	796;18031	442	443	645	645					0.05602333339948018
AFFVYPIQI	9	Unmodified	_AFFVYPIQI_					0	0	0			REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3023681640625	2	549.305136	1096.59572	-0.59819	-0.00032859	-3.5038	-0.0019246	-4.102	-0.0022532	549.3031841848409	78.78	1.6602	78.798	78.441	80.101	0.018677					119	39	6	0	0	0	0.78069	1	9730	9730		40.573	1.3198	1	13961000	+		635	25849	443	444	646	646					0.051284054880852636
AFGKLLKHS	9	Unmodified	_AFGKLLKHS_					0	0	0			REV__OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant	REV__OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	500.800552	999.58655	0.2458	0.0001231	1.9341	0.00096859	2.1799	0.0010917	500.80016144471955	98.39	1.08	98.39	98.233	99.313	0					30	24	2	0	0	0	0.024541	1	12545	12545		11.511	0	1	53730	+		636	27009	444	445	647	647					0.08674056922427553
AFGLSEAGF	9	Unmodified	_AFGLSEAGF_					0	0	0		ENST00000502379.5_1_5:218428-224813:+|nuORF;ENST00000504824.5_1_5:218488-235547:+|nuORF;nc|ENSG00000073578|P31040-3|SDHA;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA;ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000502379.5_1_5:218428-224813:+|nuORF	ENST00000502379.5_1_5:218428-224813:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.75323486328125	2	449.718893	897.423233	0.11856	5.3321E-05	3.8964	0.0017523	4.015	0.0018056	449.72052595586104	66.254	0.7577	65.973	65.455	66.213	-0.28148					43	19	3	0	0	0	0.024487	1	7800	7800		17.365	0	1	351350			637	1509	445	446	648	648					-0.029581659192785992
AFHAQRSRA	9	Unmodified	_AFHAQRSRA_					0	0	0			REV__ARMC7|p.S183F|1|0.64|ENSG00000125449|chr17:75128989-75128989|C/T|missense_variant	REV__ARMC7|p.S183F|1|0.64|ENSG00000125449|chr17:75128989-75128989|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2797241210938	2	522.278306	1042.54206	-0.39472	-0.00020615	2.4611	0.0012854	2.0664	0.0010792	522.2795584748227	59.645	1.2663	59.731	59.351	60.618	0.085682					93	33	5	0	0	0	0.77768	1	6780	6780		40.778	1.5253	1	9733500	+		638	19169	446	447	649	649					0.02249045828943963
AFHPFIAGP	9	Unmodified	_AFHPFIAGP_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7524108886719	2	478.75307	955.491587	0.065349	3.1286E-05	-1.3179	-0.00063096	-1.2526	-0.00059968	478.752473881619	33.469	0.98684	33.469	32.79	33.777	0					89	26	4	0	0	0	0.48384	1	2390	2390		60.404	7.0522	1	14467000			639	3480	447	448	650	650					0.012061234512316332
AFHPFIAGP	9	Unmodified	_AFHPFIAGP_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	OPSCC_39_ClassI_Rep-3	3	478.7524108886719	2	478.75307	955.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.223	1	33.279	32.779	33.779	0.056572								0	0	0	0.41653	1	2328	2328		60.404	5.639	1				640	3480	447	448	651	651					0.012061234512316332
AFIEQGKRM	9	Unmodified	_AFIEQGKRM_					0	0	0		nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF;nc|ENSG00000115085|P43403-3|ZAP70;ENSG00000115085|ENST00000264972|ZAP70;ENST00000489250.1_1_2:98354321-98354571:+|nuORF	nc|ENSG00000115085|P43403-2|ZAP70	nc|ENSG00000115085|P43403-2|ZAP70	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2841186523438	2	540.286951	1078.55935	-0.32206	-0.00017401	-3.708	-0.0020034	-4.03	-0.0021774	540.284830760412	89.116	0.83817	89.116	88.767	89.605	0					46	19	3	0	0	0	0.50848	1	11254	11254		58.782	2.0609	1	1374900			641	3407	448	449	652	652					0.023212053197312343
AFIKKCKVL	9	Unmodified	_AFIKKCKVL_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2791137695312	2	525.33063	1048.64671	0.72115	0.00037884	2.6233	0.0013781	3.3445	0.0017569	525.3319397862938	87.137	0.25314	87.158	87.01	87.263	0.021263					6	5	2	0	0	0	0.024541	1	10882	10882		31.955	24.762	1	42460	+		642	22318	449	450	653	653					0.12433031261298311
AFILLMMGV	9	2 Oxidation (M)	_AFILLM(Oxidation (M))M(Oxidation (M))GV_		AFILLM(1)M(1)GV		AFILLM(60)M(60)GV	0	0	2			REV__nc|ENSG00000122126|Q01968-2|OCRL	REV__nc|ENSG00000122126|Q01968-2|OCRL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.7753295898438	2	513.771757	1025.52896	0.26886	0.00013813	-2.5759	-0.0013234	-2.307	-0.0011853	513.7706148649858	102.78	0.36362	102.65	102.54	102.9	-0.12931					15	8	2	0	0	0	0.48384	1	12756	12756		60.404	9.0682	1	401650	+		643	22627	450	451	654	654		669;670			0.01721710610354421
AFILPKAEV	9	Unmodified	_AFILPKAEV_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7405090332031	2	494.29731	986.580068	-0.16251	-8.033E-05	-3.8934	-0.0019245	-4.0559	-0.0020048	494.29531313203523	53.212	1.0062	53.085	52.753	53.759	-0.12705					56	27	4	0	0	0	0.024323	1	5580	5580		44.117	0	1	2571500			644	5053	451	452	655	655					0.08624118971033568
AFIPVEEVL	9	Unmodified	_AFIPVEEVL_					0	0	0		SESN2|p.M118Hfs*25|1|0.28|ENSG00000130766|chr1:28271866-28271867|-/T|frameshift_variant;ENSG00000130766|ENST00000253063|SESN2	SESN2|p.M118Hfs*25|1|0.28|ENSG00000130766|chr1:28271866-28271867|-/T|frameshift_variant	SESN2|p.M118Hfs*25|1|0.28|ENSG00000130766|chr1:28271866-28271867|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.32843017578125	2	508.786776	1015.559	-0.57075	-0.00029039	2.0746	0.0010555	1.5039	0.00076515	509.2899364104375	33.896	0.19353	33.896	33.739	33.932	0					7	4	2	0	0	0	0.02309	1	2463	2463		57.811	6.4758	1	41084			645	4455	452	453	656	656					0.05184108871515036
AFISFLFL	8	Unmodified	_AFISFLFL_					0	0	0		PCDHAC1|p.C690F|1|0.25|ENSG00000248383|chr5:140928961-140928961|G/T|missense_variant	PCDHAC1|p.C690F|1|0.25|ENSG00000248383|chr5:140928961-140928961|G/T|missense_variant	PCDHAC1|p.C690F|1|0.25|ENSG00000248383|chr5:140928961-140928961|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2781982421875	2	479.275847	956.537141	0.97275	0.00046622	3.0179	0.0014464	3.9906	0.0019126	479.2772430798235	96.223	1.1864	96.225	95.653	96.84	0.0020752					68	27	4	0	0	0	0.96719	1	12179	12179		42.474	6.8562	1	1858600			646	18948	453	454	657	657					0.05713348913616301
AFISFLFL	8	Unmodified	_AFISFLFL_					0	0	0		PCDHAC1|p.C690F|1|0.25|ENSG00000248383|chr5:140928961-140928961|G/T|missense_variant	PCDHAC1|p.C690F|1|0.25|ENSG00000248383|chr5:140928961-140928961|G/T|missense_variant	PCDHAC1|p.C690F|1|0.25|ENSG00000248383|chr5:140928961-140928961|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2779235839844	2	479.275847	956.537141	-0.050895	-2.4393E-05	4.2477	0.0020358	4.1968	0.0020114	479.2776228774827	96.341	2.321	96.184	95.4	97.721	-0.15646					118	52	5	0	0	0	1.0133	1	11919	11919		35.201	0	1	1642300			647	18948	453	454	658	658					0.05713348913616301
AFIVHKKKHAM	11	Unmodified	_AFIVHKKKHAM_					0	0	0		ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2569274902344	3	437.256904	1308.74888	0.65097	0.00028464	0.44358	0.00019396	1.0946	0.0004786	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	0.98542	2	12436	12367;12436		40.058	11.481	1	1147200			648	9417	454	455	659;660	660					0.10685697332928612
AFKCLFCAL	9	Unmodified	_AFKCLFCAL_					0	0	0		ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7749938964844	2	508.258816	1014.50308	0.15222	7.7367E-05	-3.092	-0.0015715	-2.9398	-0.0014942	508.25719278041856	87.221	0.59013	87.186	86.899	87.489	-0.035362					21	13	2	0	0	0	0.024466	1	10915	10915		33.516	13.519	1	217860			649	16854	455	456	661	661					-0.0035913884131559826
AFKCLFCAL	9	Unmodified	_AFKCLFCAL_					0	0	0		ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.258816	1014.50308	0.018283	9.2923E-06	-3.0185	-0.0015342	-3.0002	-0.0015249	508.25727147782834	87.274	0.59206	87.274	86.899	87.491	0	0.13719	0.00014567	NaN	42.474	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201300			650	16854	455	456							-0.0035913884131559826
AFKCLFCAL	9	Unmodified	_AFKCLFCAL_					0	0	0		ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.258816	1014.50308	0.64012	0.00032535	-3.6883	-0.0018746	-3.0482	-0.0015493	508.2569487431969	87.205	0.6739	87.226	86.927	87.601	0.021263	0.089744	-0.00053526	NaN	42.474	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158480			651	16854	455	456							-0.0035913884131559826
AFKCLFCAL	9	Unmodified	_AFKCLFCAL_					0	0	0		ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.258816	1014.50308	-0.055867	-2.8395E-05	-3.011	-0.0015304	-3.0669	-0.0015588	508.25679343004634	87.252	0.37547	87.074	86.862	87.238	-0.17875	-0.06301	0.00015325	NaN	42.474	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37377			652	16854	455	456							-0.0035913884131559826
AFKCLFCAL	9	Unmodified	_AFKCLFCAL_					0	0	0		ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.258816	1014.50308	0.4068	0.00020676	-2.1158	-0.0010753	-1.7089	-0.00086859	508.2575876866132	87.146	0.25081	87.01	86.885	87.136	-0.13613	-0.12647	0.0010633	NaN	42.474	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69657			653	16854	455	456							-0.0035913884131559826
AFKCLFCAL	9	Unmodified	_AFKCLFCAL_					0	0	0		ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	ENST00000562863.1_1_16:68325384-68325468:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.258816	1014.50308	-0.13079	-6.6475E-05	-2.6352	-0.0013394	-2.766	-0.0014059	508.2568514984026	87.187	0.3362	87.05	86.911	87.248	-0.13734	-0.08676	0.00053526	NaN	42.474	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41141			654	16854	455	456							-0.0035913884131559826
AFKEVLPAF	9	Unmodified	_AFKEVLPAF_					0	0	0		nc|ENSG00000173612|Q5T6X5-3|GPRC6A;ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.31524658203125	2	511.289485	1020.56442	-0.59973	-0.00030664	-2.954	-0.0015103	-3.5537	-0.001817	511.78982103595285	22.692	1.6007	22.692	21.965	23.566	0					80	35	5	0	0	0	0.024319	1	782	782		39.253	3.6345	1	521130			655	8392	456	457	662	662					0.054958324539938985
AFKPIKKGK	9	Unmodified	_AFKPIKKGK_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2923278808594	2	508.834394	1015.65424	0.31748	0.00016154	-0.84849	-0.00043174	-0.53101	-0.00027019	508.8340661266588	53.133	0.38831	53.006	52.792	53.181	-0.12705					15	9	2	0	0	0	0.024412	1	5545	5545		24.203	0	1	113610			656	18271	457	458	663	663					0.1470350685323183
AFLAFMEQ	8	Unmodified	_AFLAFMEQ_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.75286865234375	2	478.730946	955.447339	-0.23206	-0.00011109	1.5551	0.00074449	1.3231	0.0006334	478.7308047475255	32.443	0.44627	32.455	32.26	32.706	0.011795					18	11	2	0	0	0	0.027866	1	2245	2245		85.359	5.4203	1	120490			657	10895	458	459	664	664					-0.03216648757256735
AFLFAVRSQ	9	Unmodified	_AFLFAVRSQ_					0	0	0		ENSG00000196739|ENST00000356083|COL27A1;nc|ENSG00000196739|Q8IZC6-3|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2744750976562	2	519.790184	1037.56581	0.32244	0.0001676	-3.1643	-0.0016448	-2.8419	-0.0014772	519.7884858208763	17.181	0.69573	17.039	16.711	17.407	-0.14278					36	18	4	0	0	0	0.024374	1	131	131		40.778	0	1	367140			658	9918	459	460	665	665					0.04853466542749629
AFLFSLFL	8	Unmodified	_AFLFSLFL_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27813720703125	2	479.275847	956.537141	0.83865	0.00040194	3.2963	0.0015798	4.1349	0.0019818	479.2772019259283	96.265	2.3127	96.128	95.156	97.468	-0.1367					130	52	5	0	0	0	0.95417	1	11891	11891		44.531	0	1	1775700			659	4950	460	461	666	666					0.05713348913616301
AFLLGKVINT	10	Unmodified	_AFLLGKVINT_					0	0	0			REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF	REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.74951171875	2	538.329142	1074.64373	-0.67371	-0.00036268	-1.7191	-0.00092543	-2.3928	-0.0012881	538.3284968244203	76.217	0.42574	75.944	75.699	76.125	-0.27266					23	10	3	0	0	0	0.03519	1	9033	9033		56.721	28.839	1	245920	+		660	34143	461	462	667	667					0.10939479408125408
AFLLLTQTD	9	Unmodified	_AFLLLTQTD_					0	0	0		ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4	ENSG00000154655|ENST00000317931|L3MBTL4	ENSG00000154655|ENST00000317931|L3MBTL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2936096191406	2	511.281857	1020.54916	-0.00805	-4.1158E-06	2.1022	0.0010748	2.0942	0.0010707	511.2833076726375	101.95	0.92458	101.95	101.31	102.24	-0.0054474					42	20	3	0	0	0	0.024427	1	12925	12925		42.396	9.5837	1	95872			661	6425	462	463	668	668					0.039709208661292905
AFLLPAPFPF	10	Unmodified	_AFLLPAPFPF_					0	0	0		ENST00000569217.1_1_16:28855425-28855644:-|nuORF	ENST00000569217.1_1_16:28855425-28855644:-|nuORF	ENST00000569217.1_1_16:28855425-28855644:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3170776367188	2	560.315503	1118.61645	-0.14916	-8.3576E-05	2.3564	0.0013203	2.2073	0.0012368	560.3167646189008	47.733	0.96075	47.457	47.044	48.004	-0.27598					68	25	5	0	0	0	1.0812	1	4685	4685		35.201	2.3883	1	5871700			662	17000	463	464	669	669					0.061889958677284085
AFLTPTTASA	10	Unmodified	_AFLTPTTASA_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2582092285156	2	490.258382	978.502212	-0.27758	-0.00013609	2.0379	0.0009991	1.7603	0.00086302	490.2598634062466	102.19	1.7715	102.19	101.86	103.63	0					66	41	2	0	0	0	1.0992	1	13112	13112		32.812	2.4947	1	458520	+		663	19952	464	465	670	670					0.012100613149868877
AFLVGLISIC	10	Unmodified	_AFLVGLISIC_					0	0	0		ENSG00000147027|ENST00000275954|TMEM47	ENSG00000147027|ENST00000275954|TMEM47	ENSG00000147027|ENST00000275954|TMEM47	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2965698242188	2	518.298996	1034.58344	-0.1979	-0.00010257	-3.3248	-0.0017232	-3.5227	-0.0018258	518.2973986074476	102.7	2.9604	102.7	101.67	104.63	-0.0046082					228	70	5	0	0	0	0.60134	1	13109	13109		76.847	8.0598	1	70878000			664	5925	465	466	671	671					0.06753045753407605
AFLVGLISIC	10	Unmodified	_AFLVGLISIC_					0	0	0		ENSG00000147027|ENST00000275954|TMEM47	ENSG00000147027|ENST00000275954|TMEM47	ENSG00000147027|ENST00000275954|TMEM47	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2974243164062	2	518.298996	1034.58344	0.18652	9.6674E-05	-3.8533	-0.0019971	-3.6667	-0.0019005	518.2968764050886	102.52	1.719	102.39	101.41	103.13	-0.12666					79	41	4	0	0	0	0.49678	1	12743	12743		88.643	11.796	1	4753000			665	5925	465	466	672	672					0.06753045753407605
AFMLESVLDQ	10	Unmodified	_AFMLESVLDQ_					0	0	0		ENST00000466561.1_1_1:17312718-17313137:-|nuORF;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	ENST00000466561.1_1_1:17312718-17313137:-|nuORF	ENST00000466561.1_1_1:17312718-17313137:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.7817993164062	2	576.783907	1151.55326	-0.24821	-0.00014316	-2.6042	-0.0015021	-2.8524	-0.0016452	576.7822400949027	65.926	1.9371	65.684	64.6	66.538	-0.24145					163	49	4	0	0	0	0.88896	1	7505	7505		54.776	7.119	1	1844500			666	6742	466	467	673	673					-0.016453577024549304
AFNIIGRRI	9	Unmodified	_AFNIIGRRI_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;nc|ENSG00000087111|Q96S52-2|PIGS	ENSG00000087111|ENST00000308360|PIGS	ENSG00000087111|ENST00000308360|PIGS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.3214111328125	2	530.324725	1058.6349	-0.085249	-4.521E-05	1.6582	0.00087939	1.573	0.00083418	530.325505774577	106.84	0.3198	106.84	106.64	106.96	0.0018311					19	10	3	0	0	0	0.70186	1	13634	13634		45.952	1.5748	1	225500			667	1836	467	468	674	674					0.10792550562314318
AFNRFSTLT	9	Unmodified	_AFNRFSTLT_					0	0	0		nc|ENSG00000196247|Q9UII5|ZNF107;ZNF107|p.C750Mfs*18|1|0.43|ENSG00000196247|chr7:64708548-64708549|-/A|frameshift_variant;ENSG00000196247|ENST00000620827|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7803955078125	2	528.777274	1055.53999	0.31441	0.00016625	-4.412	-0.002333	-4.0976	-0.0021667	528.7754262283861	82.336	0.25983	82.116	81.957	82.217	-0.22015					8	5	2	0	0	0	0.024319	1	9887	9887		47.657	20.964	1	39203			668	9844	468	469	675	675					0.01444572300465552
AFNRFSTLT	9	Unmodified	_AFNRFSTLT_					0	0	0		nc|ENSG00000196247|Q9UII5|ZNF107;ZNF107|p.C750Mfs*18|1|0.43|ENSG00000196247|chr7:64708548-64708549|-/A|frameshift_variant;ENSG00000196247|ENST00000620827|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.777274	1055.53999	-0.95904	-0.00050712	1.1077	0.00058571	0.14863	7.8593E-05	528.7777738826724	82.21	0.20843	82.21	82.113	82.321	0	0.047024	0.0011663	NaN	47.657	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303020			669	9844	468	469							0.01444572300465552
AFNSRSYL	8	Unmodified	_AFNSRSYL_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.75286865234375	2	479.243067	956.47158	-0.12318	-5.9032E-05	0.87009	0.00041699	0.74691	0.00035795	479.24327359504764	32.922	0.71778	32.922	32.569	33.287	0					43	18	3	0	0	0	0.027866	1	2279	2279		55.504	27.622	1	3168000			670	9494	469	470	676	676					-0.008396722793804656
AFPLPGPTFTG	11	Unmodified	_AFPLPGPTFTG_					0	0	0		ENST00000582655.5_1_17:27237161-27237842:-|nuORF;ENST00000332830.8_2_17:27234686-27239753:-|nuORF;ENST00000577226.5_1_17:27237161-27239849:-|nuORF	ENST00000582655.5_1_17:27237161-27237842:-|nuORF	ENST00000582655.5_1_17:27237161-27237842:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.7915649414062	2	552.78985	1103.56515	-0.21074	-0.00011649	3.7099	0.0020508	3.4991	0.0019343	552.7918647764802	17.638	0.49844	17.431	17.265	17.764	-0.20669					18	9	3	0	0	0	1.0119	1	205	205		34.173	1.422	1	74972			671	12362	470	471	677	677					0.01750627103047009
AFPLPGPTFTG	11	Unmodified	_AFPLPGPTFTG_					0	0	0		ENST00000582655.5_1_17:27237161-27237842:-|nuORF;ENST00000332830.8_2_17:27234686-27239753:-|nuORF;ENST00000577226.5_1_17:27237161-27239849:-|nuORF	ENST00000582655.5_1_17:27237161-27237842:-|nuORF	ENST00000582655.5_1_17:27237161-27237842:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.78985	1103.56515	1.1098	0.00061349	2.0136	0.0011131	3.1234	0.0017266	552.7908948465864	17.637	0.44923	17.483	17.308	17.758	-0.15403	0.029553	-0.00048649	NaN	34.173	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86323			672	12362	470	471							0.01750627103047009
AFPMASSFSD	10	Unmodified	_AFPMASSFSD_					0	0	0		ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8079223632812	2	530.226225	1058.4379	-0.16022	-8.4955E-05	-0.015878	-8.4191E-06	-0.1761	-9.3374E-05	530.2266046916479	71.736	0.2675	71.736	71.528	71.795	0					10	6	2	0	0	0	0.03519	1	8682	8682		20.947	3.582	1	57442			673	10098	471	472	678	678					-0.0889846183345071
AFPMASSFSD	10	Unmodified	_AFPMASSFSD_					0	0	0		ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.226225	1058.4379	0.21855	0.00011588	-0.45749	-0.00024257	-0.23894	-0.00012669	530.727414206519	71.832	0.29978	71.842	71.578	71.878	0.0097733	0.053272	-0.00017341	NaN	19.104	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59910			674	10098	471	472							-0.0889846183345071
AFPPSVRAL	9	Unmodified	_AFPPSVRAL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2777099609375	2	479.279452	956.544351	0.21198	0.0001016	-4.0742	-0.0019527	-3.8622	-0.0018511	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.87448	1	10328	10328		34.173	0.65696	1	4888300			675	7039	472	473	679	679					0.0643408151404401
AFQQQRRK	8	Unmodified	_AFQQQRRK_					0	0	0		ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2669067382812	2	531.301781	1060.58901	-0.027836	-1.4789E-05	-0.33243	-0.00017662	-0.36026	-0.00019141	531.3015139182621	20.831	0.82926	20.664	20.098	20.927	-0.16774					22	16	2	0	0	0	0.027866	1	568	568		40.573	6.4001	1	46830			676	15903	473	474	680	680					0.06113905380084361
AFRAVGPAVM	10	Unmodified	_AFRAVGPAVM_					0	0	0			REV__ENST00000444626.5_2_22:29664062-29664269:+|nuORF	REV__ENST00000444626.5_2_22:29664062-29664269:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.80218505859375	2	509.778762	1017.54297	-0.61671	-0.00031439	-3.9266	-0.0020017	-4.5433	-0.0023161	509.7764913695385	82.574	0.94963	82.434	82.13	83.079	-0.14014					38	21	2	0	0	0	0.03519	1	9988	9988		40.573	21.213	1	275750	+		677	32598	474	475	681	681					0.034901241536317684
AFRKKKKLV	9	Unmodified	_AFRKKKKLV_					0	0	0		ENST00000601728.1_1_19:23309373-23309649:-|nuORF	ENST00000601728.1_1_19:23309373-23309649:-|nuORF	ENST00000601728.1_1_19:23309373-23309649:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.3216552734375	2	559.382043	1116.74953	-0.19856	-0.00011107	1.8925	0.0010586	1.694	0.00094757	559.3836439604759	67.86	0.12096	67.572	67.511	67.632	-0.28834					4	2	2	0	0	0	0.024541	1	8075	8075		24.203	6.8378	1	37782			678	17517	475	476	682	682					0.19582860044260997
AFRLRLQRW	9	Unmodified	_AFRLRLQRW_					0	0	0			REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.1953430175781	3	415.915758	1244.72544	-0.48248	-0.00020067	1.2621	0.00052491	0.77957	0.00032424	415.91648301567795	42.092	0.98782	41.86	41.469	42.457	-0.23186					46	26	3	0	0	0	0.024456	1	3779	3779		42.864	9.8249	1	460790	+		679	34605	476	477	683	683					0.11287019610585958
AFRLRLQRW	9	Unmodified	_AFRLRLQRW_					0	0	0			REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	415.915758	1244.72544	0.81206	0.00033775	-1.7485	-0.00072724	-0.93648	-0.0003895	415.9150270950405	41.706	0.72791	41.706	41.292	42.02	0	-0.11797	-0.0010875	NaN	42.864	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360080	+		680	34605	476	477							0.11287019610585958
AFRLRLQRW	9	Unmodified	_AFRLRLQRW_					0	0	0			REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	415.915758	1244.72544	0.017818	7.411E-06	-0.70117	-0.00029163	-0.68335	-0.00028422	415.9153664277521	41.957	0.56454	41.825	41.421	41.985	-0.1322	0.00097392	0.00021935	NaN	42.864	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356000	+		681	34605	476	477							0.11287019610585958
AFRLRLQRW	9	Unmodified	_AFRLRLQRW_					0	0	0			REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	REV__ENST00000533444.1_1_8:145149952-145150036:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	415.915758	1244.72544	0.061027	2.5382E-05	-0.77356	-0.00032174	-0.71253	-0.00029635	415.91533573436965	41.851	0.55179	41.874	41.597	42.149	0.023006	0.050067	0.00012903	NaN	42.864	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405500	+		682	34605	476	477							0.11287019610585958
AFRLVKDQD	9	Unmodified	_AFRLVKDQD_					0	0	0			REV__ENSG00000164976|ENST00000297625|MYORG	REV__ENSG00000164976|ENST00000297625|MYORG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3167724609375	2	546.29583	1090.57711	-0.34173	-0.00018669	-3.7973	-0.0020745	-4.1391	-0.0022612	546.2937020519548	87.216	0.91086	87.181	86.858	87.769	-0.035362					46	21	3	0	0	0	0.024477	1	10955	10955		35.618	12.576	1	670050	+		683	25828	477	478	684	684					0.03544243846226891
AFRQPKMV	8	Unmodified	_AFRQPKMV_					0	0	0			REV__ENST00000473756.1_1_3:98699917-98700148:+|nuORF	REV__ENST00000473756.1_1_3:98699917-98700148:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7562561035156	2	488.77348	975.532406	1.9829	0.00096919	2.1173	0.0010349	4.1002	0.0020041	488.77439868189623	19.711	0.58145	19.777	19.34	19.921	0.066195					18	11	2	0	0	0	0.027866	1	409	409		37.028	6.5248	1	24524	+		684	33249	478	479	685	685					0.043661414992016034
AFRRLSLLR	9	Unmodified	_AFRRLSLLR_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3295288085938	2	566.359099	1130.70365	-0.64723	-0.00036657	2.8597	0.0016196	2.2125	0.0012531	566.3606706900729	89.393	0.71512	89.23	88.973	89.688	-0.1626					37	16	3	0	0	0	0.024405	1	10881	10881		35.618	13.658	1	316600			685	2071	479	480	686	686					0.1435221486201499
AFRTFYLD	8	Unmodified	_AFRTFYLD_					0	0	0		ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8009033203125	2	516.761092	1031.50763	0.77878	0.00040245	-3.4765	-0.0017965	-2.6977	-0.001394	516.758976790477	36.975	0.27535	36.975	36.805	37.081	0					10	6	2	0	0	0	0.027866	1	2965	2965		37.159	0	1	91091			686	10492	480	481	687	687					-0.006862151025416097
AFSASLGRGW	10	Unmodified	_AFSASLGRGW_					0	0	0			REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	REV__ENST00000294964.5_1_2:42285284-42285593:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2943115234375	2	526.269616	1050.52468	-1.5364	-0.00080857	4.0417	0.002127	2.5052	0.0013184	526.2750253190188	52.363	0.59755	52.094	51.795	52.393	-0.26903					51	15	4	0	0	0	0.03519	1	5441	5441		34.173	7.3764	1	937900	+		687	29969	481	482	688	688					0.001437055032738499
AFSEKSVLR	9	Unmodified	_AFSEKSVLR_					0	0	0		ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7694091796875	2	518.792924	1035.57129	-0.87048	-0.0004516	-0.81546	-0.00042306	-1.6859	-0.00087465	518.792751277299	65.711	0.74038	65.498	65.215	65.956	-0.21327					25	17	2	0	0	0	0.024405	1	7526	7526		44.117	3.3386	1	169920			688	9898	482	483	689	689					0.05493145334571636
AFSEKSVLR	9	Unmodified	_AFSEKSVLR_					0	0	0		ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.792924	1035.57129	-0.35579	-0.00018458	1.0837	0.0005622	0.72788	0.00037762	518.7932523283048	65.667	0.52967	65.395	65.229	65.758	-0.27283	-0.050495	0.00072739	NaN	35.618	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132130			689	9898	482	483							0.05493145334571636
AFSEKSVLR	9	Unmodified	_AFSEKSVLR_					0	0	0		ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	ENSG00000196597|ENST00000481138|ZNF782	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.792924	1035.57129	-0.49684	-0.00025776	3.3651	0.0017458	2.8683	0.0014881	518.7952578950376	65.334	0.92957	65.372	65.007	65.936	0.037384	-0.073472	0.0030946	NaN	35.618	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223070			690	9898	482	483							0.05493145334571636
AFSETGYTI	9	Unmodified	_AFSETGYTI_					0	0	0			REV__ENST00000507834.3_1_4:86167470-86167848:+|nuORF	REV__ENST00000507834.3_1_4:86167470-86167848:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7344665527344	2	494.73474	987.454927	0.16113	7.9718E-05	0.11367	5.6239E-05	0.27481	0.00013596	494.73468461659263	67.846	0.81554	67.612	67.303	68.119	-0.23376					55	19	4	0	0	0	0.83071	1	7836	7836		37.159	0.13063	1	1818100	+		691	34056	483	484	690	690					-0.039302179559967954
AFSGSFFVGE	10	Unmodified	_AFSGSFFVGE_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.841552734375	2	524.242732	1046.47091	0.025051	1.3133E-05	-4.3341	-0.0022721	-4.3091	-0.002259	524.2398268971191	46.894	0.27486	46.624	46.49	46.764	-0.26939					9	7	2	0	0	0	0.03519	1	4537	4537		29.15	2.4566	1	143200	+		692	36453	484	485	691	691					-0.0504651171909245
AFSIRKDLI	9	Unmodified	_AFSIRKDLI_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8163452148438	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.75397	1	10677	10677		42.396	3.1433	1	4853400			693	10038	485	486	692	692					0.09498308748334239
AFSQHSNL	8	Unmodified	_AFSQHSNL_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2301330566406	2	452.219591	902.42463	0.15251	6.8969E-05	-1.8588	-0.00084056	-1.7062	-0.00077159	452.21912208400823	26.875	0.29292	26.875	26.658	26.951	0					9	6	2	0	0	0	0.027866	1	1415	1415		88.643	14.126	1	51117			694	2052	486	487	693	693					-0.030485318305181863
AFSTLMPSSV	10	Unmodified	_AFSTLMPSSV_					0	0	0		nc|ENSG00000141873|Q9BRY0-2|SLC39A3	nc|ENSG00000141873|Q9BRY0-2|SLC39A3	nc|ENSG00000141873|Q9BRY0-2|SLC39A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2418823242188	2	520.260068	1038.50558	-0.32156	-0.0001673	2.6347	0.0013707	2.3131	0.0012034	520.2614174831522	76.499	0.45837	76.231	76.008	76.467	-0.26806					14	10	2	0	0	0	0.03519	1	9046	9046		40.778	16.575	1	77856			695	18342	487	488	694	694					-0.012130119026551256
AFSTLMPSSV	10	Unmodified	_AFSTLMPSSV_					0	0	0		nc|ENSG00000141873|Q9BRY0-2|SLC39A3	nc|ENSG00000141873|Q9BRY0-2|SLC39A3	nc|ENSG00000141873|Q9BRY0-2|SLC39A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2418823242188	2	520.260068	1038.50558	0.21507	0.00011189	2.4432	0.0012711	2.6583	0.001383	520.2615583588451	75.892	0.54704	75.717	75.584	76.131	-0.17548					18	13	2	0	0	0	0.03519	1	8979	8979		56.721	14.325	1	124910			696	18342	487	488	695	695					-0.012130119026551256
AFVIPILEI	9	Unmodified	_AFVIPILEI_					0	0	0		ENSG00000111364|ENST00000238146|DDX55;ENST00000545042.1_1_12:124090574-124092188:+|nuORF;ENST00000539934.5_1_12:124090492-124093337:+|nuORF;ENST00000544429.5_1_12:124090532-124092210:+|nuORF;ENST00000542286.5_1_12:124086695-124092071:+|nuORF	ENSG00000111364|ENST00000238146|DDX55	ENSG00000111364|ENST00000238146|DDX55	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8155212402344	2	507.815336	1013.61612	-0.3235	-0.00016428	0.8229	0.00041788	0.4994	0.0002536	507.81561002100875	103.92	1.1172	103.92	103.56	104.68	0					75	27	5	0	0	0	0.26797	1	13313	13313		79.939	3.0926	1	1065300			697	3113	488	489	696	696					0.1098557614790252
AFVKCTKAR	9	Unmodified	_AFVKCTKAR_					0	0	0		ENST00000487659.1_1_1:1342042-1342597:-|nuORF;ENSG00000242485|ENST00000344843|MRPL20;nc|ENSG00000242485|Q9BYC9-2|MRPL20	ENST00000487659.1_1_1:1342042-1342597:-|nuORF	ENST00000487659.1_1_1:1342042-1342597:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2520141601562	2	512.292037	1022.56952	-0.52409	-0.00026849	3.8882	0.0019919	3.3641	0.0017234	512.2938055308896	20.661	0.76801	20.556	20.277	21.045	-0.10477					28	15	3	0	0	0	0.024506	1	596	596		23.042	2.0956	1	278610			698	10797	489	490	697	697					0.05913813044946892
AFVLYEQLE	9	Unmodified	_AFVLYEQLE_					0	0	0			REV__ENSG00000110455|ENST00000263776|ACCS	REV__ENSG00000110455|ENST00000263776|ACCS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.7283935546875	2	556.28714	1110.55973	-0.099768	-5.55E-05	2.5613	0.0014248	2.4616	0.0013693	556.7897817627755	57.111	0.65022	57.206	56.815	57.465	0.095306					24	17	2	0	0	0	0.024344	1	6370	6370		45.972	19.279	1	382700	+		699	21861	490	491	698	698					0.00886903520586202
AFVLYEQLE	9	Unmodified	_AFVLYEQLE_					0	0	0			REV__ENSG00000110455|ENST00000263776|ACCS	REV__ENSG00000110455|ENST00000263776|ACCS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.28714	1110.55973	-0.51341	-0.0002856	3.3891	0.0018853	2.8757	0.0015997	556.2892583936743	57.129	0.50996	56.962	56.597	57.107	-0.1672	-0.122	0.00073138	NaN	45.972	18	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215850	+		700	21861	490	491							0.00886903520586202
AFVPITSSTG	10	Unmodified	_AFVPITSSTG_					0	0	0		ENST00000557219.1_1_14:76349072-76368569:+|nuORF;ENST00000554972.1_1_14:76349147-76373016:+|nuORF	ENST00000557219.1_1_14:76349072-76368569:+|nuORF	ENST00000557219.1_1_14:76349072-76368569:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.258056640625	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	1.0781	1	13436	13436		35.618	1.4457	1	6674100			701	16666	491	492	699	699					0.012100613149982564
AFVQFLILIMA	11	Unmodified	_AFVQFLILIMA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3696899414062	2	633.369952	1264.72535	0.38898	0.00024637	-1.7357	-0.0010994	-1.3467	-0.00085299	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	0.96716	1	11869	11869		44.117	4.864	1	3178500	+		702	34001	492	493	700	700					0.10357838775735217
AFVQFLILIMA	11	Unmodified	_AFVQFLILIMA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3712768554688	2	633.369952	1264.72535	1.1238	0.00071176	-2.3848	-0.0015104	-1.261	-0.00079869	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0054	2	12317	12077;12317		35.618	2.8059	1	8250400	+		703	34001	492	493	701;702	702					0.10357838775735217
AFVQFLILIMA	11	Unmodified	_AFVQFLILIMA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3682250976562	2	633.369952	1264.72535	0.56003	0.00035471	-1.8323	-0.0011605	-1.2723	-0.00080583	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	1.0054	1	12052	12052		35.618	1.4457	1	8480900	+		704	34001	492	493	703	703					0.10357838775735217
AFVQFLILIMA	11	Unmodified	_AFVQFLILIMA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.369384765625	2	633.369952	1264.72535	-0.5109	-0.00032359	-0.79477	-0.00050339	-1.3057	-0.00082697	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.99846	2	11965	11876;11965		37.159	2.0071	1	9245900	+		705	34001	492	493	704;705	705					0.10357838775735217
AFVQFLILIMA	11	Unmodified	_AFVQFLILIMA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.369140625	2	633.369952	1264.72535	-0.4938	-0.00031276	-0.99465	-0.00062998	-1.4885	-0.00094274	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.87162	2	11869	11869;11940		53.351	7.3792	1	9845500	+		706	34001	492	493	706;707	706					0.10357838775735217
AFVQHSHLI	9	Unmodified	_AFVQHSHLI_					0	0	0		ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622|ZNF250	ENSG00000196150|ENST00000417550|ZNF250	ENSG00000196150|ENST00000417550|ZNF250	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2872924804688	2	526.287808	1050.56106	-0.65152	-0.00034289	-1.1243	-0.00059171	-1.7758	-0.0009346	526.2871737097381	82.382	1.5542	82.242	81.827	83.381	-0.14014					84	35	4	0	0	0	0.29158	1	9946	9946		76.774	12.567	1	7768300			707	9826	493	494	708	708					0.03780582400008825
AFVVEHVGL	9	Unmodified	_AFVVEHVGL_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR;REV__ENSG00000215644|ENST00000400723|GCGR;REV__ENST00000591224.1_1_19:46181025-46181577:+|nuORF	REV__ENSG00000215644|ENST00000400723|GCGR	MSMS	OPSCC_39_ClassI_Rep-1	1	485.7696533203125	2	485.77146	969.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.391	1	35.391	34.891	35.891	0								0	0	0	0.60629	1	2721	2721		38.806	1.647	1		+		708	28810;19903;35718	494	495	709	709					0.042383752771456784
AFVVFVVKL	9	Unmodified	_AFVVFVVKL_					0	0	0			REV__ENST00000479810.6_1_21:42692883-42718146:+|nuORF	REV__ENST00000479810.6_1_21:42692883-42718146:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.3271179199219	2	511.325871	1020.63719	0.48015	0.00024551	1.947	0.00099554	2.4271	0.0012411	511.326731002724	96.077	1.1484	96.084	95.732	96.881	0.0065002					67	26	4	0	0	0	1.0101	1	12214	12214		18.324	3.6603	1	1445900	+		709	27616	495	496	710	710					0.12769586247418374
AFWKQMAN	8	Unmodified	_AFWKQMAN_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7586669921875	2	498.242012	994.469472	-0.31863	-0.00015876	3.615	0.0018011	3.2963	0.0016424	498.24363273425706	40.67	0.41039	40.693	40.595	41.005	0.023006					16	11	2	0	0	0	0.027866	1	3587	3587		35.201	0	1	442960			710	1492	496	497	711	711					-0.027984242888464905
AFWLSACRSL	10	Unmodified	_AFWLSACRSL_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.762939453125	2	577.294776	1152.575	0.16259	9.3862E-05	-1.1396	-0.0006579	-0.97704	-0.00056404	577.29384743617	80.428	1.1388	80.191	79.916	81.055	-0.23783					56	27	4	0	0	0	0.03519	1	9598	9598		23.523	0	1	1371700			711	7004	497	498	712	712					0.004814918367628707
AFWLSPSSLE	10	Unmodified	_AFWLSPSSLE_					0	0	0		ENST00000472002.5_1_12:6760363-6762075:-|nuORF	ENST00000472002.5_1_12:6760363-6762075:-|nuORF	ENST00000472002.5_1_12:6760363-6762075:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2303466796875	2	568.784764	1135.55498	-0.89495	-0.00050904	-3.3062	-0.0018805	-4.2012	-0.0023896	568.7826415099311	38.479	0.54274	38.3	38.068	38.611	-0.17929					31	14	3	0	0	0	0.03519	1	3167	3167		34.173	0	1	717290			712	14978	498	499	713	713					-0.007379806221706531
AFWQPIWLTA	10	Unmodified	_AFWQPIWLTA_					0	0	0			REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.56304931640625	3	411.553603	1231.63898	0.58611	0.00024122	-2.6889	-0.0011066	-2.1028	-0.00086541	411.5526316628625	32.592	0.24712	32.399	32.249	32.496	-0.19261					10	5	3	0	0	0	0.03519	1	2241	2241		33.922	13.891	1	250110	+		713	36696	499	500	714	714					0.03242595265373893
AFWVKRAW	8	Unmodified	_AFWVKRAW_					0	0	0		nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8084106445312	2	532.295436	1062.57632	-0.17282	-9.1993E-05	-3.86	-0.0020546	-4.0328	-0.0021466	532.2932316669119	20.306	0.67844	20.138	19.864	20.542	-0.16774					22	13	2	0	0	0	0.027866	1	576	576		19.36	0	1	164710			714	18440	500	501	715	715					0.047534939878460136
AFYRSAKN	8	Unmodified	_AFYRSAKN_					0	0	0			REV__MKRN3|p.C400S|1|0.16|ENSG00000179455|chr15:23566980-23566980|T/A|missense_variant	REV__MKRN3|p.C400S|1|0.16|ENSG00000179455|chr15:23566980-23566980|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.75286865234375	2	478.751059	955.487565	0.066148	3.1668E-05	2.8665	0.0013723	2.9327	0.001404	478.75251791046117	32.512	0.64111	32.512	32.186	32.827	0					55	16	4	0	0	0	0.68535	1	2279	2279		68.485	7.5128	1	19722000	+		715	36380	501	502	716	716					0.008040339575131839
AFYRSAKN	8	Unmodified	_AFYRSAKN_					0	0	0			REV__MKRN3|p.C400S|1|0.16|ENSG00000179455|chr15:23566980-23566980|T/A|missense_variant	REV__MKRN3|p.C400S|1|0.16|ENSG00000179455|chr15:23566980-23566980|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.75286865234375	2	478.751059	955.487565	-0.23744	-0.00011368	3.0939	0.0014812	2.8565	0.0013675	478.75261987044075	32.433	0.59963	32.445	32.144	32.743	0.011795					53	15	4	0	0	0	0.68535	1	2245	2245		68.485	2.5872	1	19767000	+		716	36380	501	502	717	717					0.008040339575131839
AFYTCASHVT	10	Unmodified	_AFYTCASHVT_					0	0	0		ENSG00000181958|ENST00000641526|OR4A15;nc|ENSG00000181958|Q8NGL6|OR4A15	ENSG00000181958|ENST00000641526|OR4A15	ENSG00000181958|ENST00000641526|OR4A15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2801513671875	2	550.247492	1098.48043	-0.46646	-0.00025667	4.0806	0.0022454	3.6142	0.0019887	550.2495416281837	72.889	0.54092	72.889	72.493	73.034	0					15	12	2	0	0	0	0.03519	1	8842	8842		40.778	4.3314	1	82683			717	9084	502	503	718	718					-0.06487066705221878
AGAAACLPR	9	Unmodified	_AGAAACLPR_					0	0	0			REV__ENSG00000004142|ENST00000540200|POLDIP2	REV__ENSG00000004142|ENST00000540200|POLDIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.7095642089844	2	415.22108	828.427607	-0.79738	-0.00033109	-3.1165	-0.0012941	-3.9139	-0.0016251	415.2177540224823	26.093	0.73819	25.93	25.758	26.496	-0.16331					34	21	3	0	0	0	0.024183	1	1330	1330		24.203	0	1	160470	+		718	19776	503	504	719	719					0.00653020022639339
AGAAAHPPL	9	Unmodified	_AGAAAHPPL_					0	0	0			REV__ENST00000304920.3_1_13:21277510-21278328:+|nuORF	REV__ENST00000304920.3_1_13:21277510-21278328:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.2123107910156	2	402.72177	803.428987	1.8478	0.00074416	-1.3936	-0.00056123	0.45425	0.00018293	402.7210856031276	36.292	0.82565	36.33	36.098	36.924	0.038044					45	22	3	0	0	0	0.024389	1	2816	2816		39.021	24.884	1	942750	+		719	30109	504	505	720	720					0.019409773830375343
AGAAAHPPL	9	Unmodified	_AGAAAHPPL_					0	0	0			REV__ENST00000304920.3_1_13:21277510-21278328:+|nuORF	REV__ENST00000304920.3_1_13:21277510-21278328:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	402.72177	803.428987	0.46069	0.00018553	0.07342	2.9568E-05	0.53411	0.0002151	402.72168127854013	36.342	0.7167	36.342	36.129	36.846	0	0.07848	0.00019926	NaN	39.021	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869340	+		720	30109	504	505							0.019409773830375343
AGAAAHPPL	9	Unmodified	_AGAAAHPPL_					0	0	0			REV__ENST00000304920.3_1_13:21277510-21278328:+|nuORF	REV__ENST00000304920.3_1_13:21277510-21278328:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	402.72177	803.428987	-0.44927	-0.00018093	0.96794	0.00038981	0.51867	0.00020888	402.72204767969856	36.161	0.67814	36.118	35.931	36.609	-0.042454	-0.14527	0.00091975	NaN	39.021	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863820	+		721	30109	504	505							0.019409773830375343
AGAAPRDHGR	10	Unmodified	_AGAAPRDHGR_					0	0	0		ENST00000311008.15_1_16:28986246-28986513:+|nuORF	ENST00000311008.15_1_16:28986246-28986513:+|nuORF	ENST00000311008.15_1_16:28986246-28986513:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2596130371094	2	504.260114	1006.50567	0.59243	0.00029874	-1.9986	-0.0010078	-1.4062	-0.00070908	504.2591277377638	22.785	0.73843	22.583	22.33	23.069	-0.20199					53	15	6	0	0	0	1.0616	1	825	825		37.812	0.65241	1	3541600			722	12076	505	506	721	721					0.0026816893222303406
AGADMDPNPRA	11	Unmodified	_AGADMDPNPRA_					0	0	0		nc|ENSG00000244274|Q9BQY9|DBNDD2;nc|ENSG00000244274|Q9BQY9-4|DBNDD2	nc|ENSG00000244274|Q9BQY9|DBNDD2	nc|ENSG00000244274|Q9BQY9|DBNDD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.834228515625	2	557.75093	1113.48731	-0.49339	-0.00027519	-3.0654	-0.0017097	-3.5587	-0.0019849	557.7490092737179	64.338	1.0482	64.083	63.534	64.582	-0.25563					48	26	3	0	0	0	0.024741	1	7284	7284		30.318	5.1917	1	704970			723	18764	506	507	722	722					-0.06489753824666877
AGAESIRL	8	Unmodified	_AGAESIRL_					0	0	0		ENSG00000204851|ENST00000599531|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	408.7324523925781	2	408.732335	815.450116	0.11997	4.9035E-05	-0.21758	-8.8932E-05	-0.09761	-3.9897E-05	408.73223273858844	31.068	0.874	31.068	30.717	31.591	0					53	20	3	0	0	0	0.78609	1	2072	2072		60.294	7.9948	1	6170500			724	10383	507	508	723	723					0.03500942691891851
AGAGGNLKL	9	Unmodified	_AGAGGNLKL_					0	0	0		ENST00000380762.4_1_X:11129580-11130263:+|nuORF	ENST00000380762.4_1_X:11129580-11130263:+|nuORF	ENST00000380762.4_1_X:11129580-11130263:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8876037597656	2	400.734877	799.455202	0.30478	0.00012214	-0.43491	-0.00017429	-0.13014	-5.215E-05	400.73466981722476	30.859	0.70814	30.859	30.592	31.3	0					22	16	2	0	0	0	0.024	1	2001	2001		45.952	0	1	88411			725	13320	508	509	724	724					0.047452465545120504
AGALNILAL	9	Unmodified	_AGALNILAL_					0	0	0		ENST00000566701.5_1_1:155184905-155187601:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.1900634765625	2	428.268553	854.522553	0.13557	5.8061E-05	0.7547	0.00032321	0.89027	0.00038128	428.2685475132667	24.867	0.73549	24.692	24.383	25.118	-0.17484					29	16	4	0	0	0	0.024183	1	1138	1138		50.025	14.824	1	193690			726	16947	509	510	725	725					0.0894727676545699
AGALVGRHAR	10	Unmodified	_AGALVGRHAR_					0	0	0			REV__ENST00000602351.5_1_19:49645338-49651464:+|nuORF	REV__ENST00000602351.5_1_19:49645338-49651464:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.758544921875	2	504.296499	1006.57845	-1.0731	-0.00054117	3.3211	0.0016748	2.248	0.0011336	504.2980837775259	59.951	0.78385	60.03	59.572	60.356	0.078888					31	20	2	0	0	0	0.03519	1	6756	6756		10.265	0	1	1308600	+		727	35871	510	511	726	726					0.0754192272564751
AGALWDPFATW	11	Unmodified	_AGALWDPFATW_					0	0	0		ENST00000356721.3_1_16:48396017-48396254:-|nuORF	ENST00000356721.3_1_16:48396017-48396254:-|nuORF	ENST00000356721.3_1_16:48396017-48396254:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.7532958984375	3	412.201229	1233.58186	-0.50649	-0.00020878	2.6772	0.0011035	2.1707	0.00089476	412.2019009176207	22.527	0.22737	22.341	22.142	22.369	-0.18539					6	4	2	0	0	0	0.024736	1	799	799		38.754	29.542	1	31425			728	12677	511	512	727	727					-0.02558872011013591
AGAQILGPQ	9	Unmodified	_AGAQILGPQ_					0	0	0			REV__ENSG00000198917|ENST00000361256|SPOUT1	REV__ENSG00000198917|ENST00000361256|SPOUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.74053955078125	2	427.74016	853.465767	0.70193	0.00030024	-0.42337	-0.00018109	0.27856	0.00011915	427.73992970717404	22.355	1.4006	22.166	21.58	22.98	-0.18894					67	29	5	0	0	0	0.55828	1	799	799		55.504	4.1688	1	1641700	+		729	28518	512	513	728	728					0.03317229208948902
AGATGVWGR	9	Unmodified	_AGATGVWGR_					0	0	0		ENST00000532260.1_1_11:67374475-67374631:+|nuORF	ENST00000532260.1_1_11:67374475-67374631:+|nuORF	ENST00000532260.1_1_11:67374475-67374631:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2797546386719	2	437.730126	873.4457	-0.4017	-0.00017583	0.84608	0.00037036	0.44439	0.00019452	437.73112991574004	21.792	0.19423	21.579	21.458	21.652	-0.2128					7	3	3	0	0	0	0.024523	1	671	671		15.642	0	1	8114.7			730	16283	513	514	729	729					0.003914782690003449
AGAYPAGPH	9	Unmodified	_AGAYPAGPH_					0	0	0		ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.7037658691406	2	420.703577	839.392602	-0.90486	-0.00038068	1.083	0.00045562	0.17814	7.4944E-05	420.70393022824857	33.664	1.1484	33.498	33.195	34.344	-0.16565					70	28	4	0	0	0	0.80342	2	2409	2409;2422		39.021	1.8624	1	5168400			731	4520	514	515	730;731	730					-0.033518995136660124
AGDLFLVIQNL	11	Unmodified	_AGDLFLVIQNL_					0	0	0			REV__ENSG00000213171|ENST00000368820|LINGO4	REV__ENSG00000213171|ENST00000368820|LINGO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8875732421875	3	401.564168	1201.67067	2.0139	0.00080871	-3.9699	-0.0015942	-1.956	-0.00078546	401.5623121671168	30.634	0.7512	30.708	30.378	31.129	0.074314					44	17	3	0	0	0	0.02478	1	1885	1885		38.714	6.68	1	342420	+		732	28730	515	516	732	732					0.07790543228657043
AGDPQLFKCLQ	11	Unmodified	_AGDPQLFKCLQ_					0	0	0		ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ENST00000475002.1_1_20:44590515-44592348:-|nuORF	ENSG00000198026|ENST00000322927|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.87786865234375	3	407.209508	1218.60669	0.46959	0.00019122	-1.4152	-0.00057628	-0.94561	-0.00038506	407.20893966133445	19.859	0.39303	19.698	19.43	19.823	-0.16079					20	7	4	0	0	0	0.024792	1	491	491		41.08	14.33	1	461690			733	10085	516	517	733	733					0.006134398000540386
AGDSGFREQFK	11	Unmodified	_AGDSGFREQFK_					0	0	0			REV__nc|ENSG00000177614|Q8N414-2|PGBD5	REV__nc|ENSG00000177614|Q8N414-2|PGBD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.55938720703125	3	414.53516	1240.58365	-0.78132	-0.00032389	-1.727	-0.0007159	-2.5083	-0.0010398	414.86880425747324	26.751	0.19398	26.515	26.341	26.535	-0.23603					7	4	2	0	0	0	0.024811	1	1410	1410		66.92	13.831	1	34393	+		734	27130	517	518	734	734					-0.027018629930807947
AGDSGFREQFK	11	Unmodified	_AGDSGFREQFK_					0	0	0			REV__nc|ENSG00000177614|Q8N414-2|PGBD5	REV__nc|ENSG00000177614|Q8N414-2|PGBD5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	414.53516	1240.58365	0.64363	0.00026681	-8.4875	-0.0035184	-7.8438	-0.0032515	414.53157235300625	26.525	0.25193	26.525	26.406	26.658	0	0.0047059	-0.0029704	NaN	66.92	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25771	+		735	27130	517	518							-0.027018629930807947
AGEARKLR	8	Unmodified	_AGEARKLR_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7901306152344	2	450.772326	899.530098	0.92237	0.00041578	-0.99514	-0.00044858	-0.072766	-3.2801E-05	450.77186599189486	19.73	0.82805	19.53	19.305	20.133	-0.2001					35	16	4	0	0	0	0.027866	1	497	497		65.803	21.686	1	1593200	+		736	29110	518	519	735	735					0.07631429085745367
AGELRVHKIFL	11	Unmodified	_AGELRVHKIFL_					0	0	0			REV__ENST00000471370.5_1_12:58007928-58008279:+|nuORF	REV__ENST00000471370.5_1_12:58007928-58008279:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8825073242188	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0292	1	11816	11816		30.318	2.2362	1	3558500	+		737	33172	519	520	736	736					0.12613333485114708
AGELRVHKIFL	11	Unmodified	_AGELRVHKIFL_					0	0	0			REV__ENST00000471370.5_1_12:58007928-58008279:+|nuORF	REV__ENST00000471370.5_1_12:58007928-58008279:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8821411132812	2	641.885147	1281.75574	-0.70618	-0.00045328	-3.5966	-0.0023086	-4.3028	-0.0027619	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	0.98904	1	11895	11895		39.253	5.0803	1	3453200	+		738	33172	519	520	737	737					0.12613333485114708
AGFLTPQN	8	Unmodified	_AGFLTPQN_					0	0	0			REV__ENST00000552491.5_1_12:50570180-50570246:-|nuORF	REV__ENST00000552491.5_1_12:50570180-50570246:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.2187194824219	2	424.21906	846.423567	0.85808	0.00036401	-2.1296	-0.00090342	-1.2715	-0.00053941	424.21808049737785	98.51	2.2248	98.507	97.634	99.859	-0.0026703					125	51	4	0	0	0	0.97924	1	12550	12550		40.573	1.7665	1	7197400	+		739	34954	520	521	738	738					-0.005787461994259502
AGGGALWEF	9	Unmodified	_AGGGALWEF_					0	0	0			REV__nc|ENSG00000127054|Q5TA45-5|INTS11	REV__nc|ENSG00000127054|Q5TA45-5|INTS11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.2477722167969	2	454.21906	906.423567	0.0010761	4.8878E-07	0.67488	0.00030655	0.67596	0.00030703	454.21921033752307	39.376	0.41216	39.15	38.983	39.395	-0.2257					15	10	2	0	0	0	0.024487	1	3305	3305		24.203	6.8378	1	134820	+		740	36642	521	522	739	739					-0.03338746199437992
AGGGGAVG	8	Unmodified	_AGGGGAVG_					0	0	0		ENST00000278840.8_1_11:61595644-61605301:+|nuORF	ENST00000278840.8_1_11:61595644-61605301:+|nuORF	ENST00000278840.8_1_11:61595644-61605301:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3173828125	1	545.267801	544.260525	-0.25889	-0.00014116	1.9365	0.0010559	1.6776	0.00091473	545.271764359726	87.942	0.16169	87.942	87.883	88.044	0					5	3	2	0	0	0	0.027866	1	11088	11088		16.705	0	1	19633			741	11704	522	523	740	740					-0.02983504530607206
AGGGGSMG	8	Unmodified	_AGGGGSMG_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.305908203125	1	593.234787	592.22751	-0.55999	-0.00033221	1.4071	0.00083476	0.84714	0.00050255	593.2362267341072	62.852	1.2707	62.631	62.518	63.789	-0.22097					88	32	4	0	0	0	0.027866	1	7160	7160		8.8223	4.5061	1	6149900			742	4418	523	524	741	741					-0.08491454644968144
AGGPGGAG	8	Unmodified	_AGGPGGAG_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1;REV__ENSG00000146828|ENST00000354161|SLC12A9;REV__ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.7620849609375	1	543.252151	542.244875	-1.5161	-0.00082364	1.9836	0.0010776	0.46751	0.00025398	543.2537180382141	84.142	0.52047	84.07	83.743	84.264	-0.072769					14	11	2	0	0	0	0.027866	1	10500	10500		10.185	0	1	114750			743	756;24512;19792	524	525	742	742					-0.04455791047655566
AGGPLEKRLS	10	Unmodified	_AGGPLEKRLS_					0	0	0			REV__ENST00000299164.3_1_11:130332473-130340845:+|nuORF	REV__ENST00000299164.3_1_11:130332473-130340845:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.2984619140625	2	514.298373	1026.58219	0.55643	0.00028617	-1.2442	-0.00063989	-0.68777	-0.00035372	514.2974943917296	95.261	0.95751	95.138	94.684	95.642	-0.12251					58	21	4	0	0	0	1.1088	1	11741	11741		31.53	2.3598	1	1848500	+		744	30031	525	526	743	743					0.0699654770885445
AGHGRLSK	8	Unmodified	_AGHGRLSK_					0	0	0		ENST00000216181.9_1_22:36745290-36784030:-|nuORF	ENST00000216181.9_1_22:36745290-36784030:-|nuORF	ENST00000216181.9_1_22:36745290-36784030:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.23779296875	2	413.238119	824.461684	0.41687	0.00017227	0.1217	5.0289E-05	0.53857	0.00022256	413.23806078557476	89.91	1.0488	89.771	89.401	90.45	-0.13824					53	24	4	0	0	0	1.0574	1	10990	10990		23.042	2.5607	1	1055600			745	11157	526	527	744	744					0.04243184505901354
AGIKGPWGF	9	Unmodified	_AGIKGPWGF_					0	0	0			REV__SLC38A4|p.C345Lfs*4|1|0.18|ENSG00000139209|chr12:46778328-46778329|-/A|frameshift_variant	REV__SLC38A4|p.C345Lfs*4|1|0.18|ENSG00000139209|chr12:46778328-46778329|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2728576660156	2	466.75307	931.491587	-0.78059	-0.00036434	0.81819	0.00038189	0.037603	1.7551E-05	466.7530394099726	20.2	0.92157	20.2	19.831	20.753	0					25	18	2	0	0	0	0.024535	1	553	553		25.45	11.675	1	40136	+		746	23926	527	528	745	745					0.023101234512296287
AGILEVLRTQ	10	Unmodified	_AGILEVLRTQ_					0	0	0		ENST00000357496.6_1_3:49114449-49131448:-|nuORF	ENST00000357496.6_1_3:49114449-49131448:-|nuORF	ENST00000357496.6_1_3:49114449-49131448:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2920532226562	2	550.327131	1098.63971	-0.11944	-6.573E-05	0.66377	0.00036529	0.54433	0.00029956	550.3274599775723	40.432	0.51774	40.432	40.247	40.764	0					32	14	3	0	0	0	0.03519	1	3581	3581		62.107	1.9892	1	685700			747	12695	528	529	746	746					0.09433389914443069
AGILEVLRTQ	10	Unmodified	_AGILEVLRTQ_					0	0	0		ENST00000357496.6_1_3:49114449-49131448:-|nuORF	ENST00000357496.6_1_3:49114449-49131448:-|nuORF	ENST00000357496.6_1_3:49114449-49131448:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2927856445312	2	550.327131	1098.63971	-0.85793	-0.00047214	1.145	0.00063015	0.28711	0.000158	550.327700901807	40.7	0.40729	40.723	40.527	40.934	0.023003					25	11	3	0	0	0	0.03519	1	3553	3553		47.657	1.6851	1	580440			748	12695	528	529	747	747					0.09433389914443069
AGILLVGGVL	10	Unmodified	_AGILLVGGVL_					0	0	0			REV__ENSG00000069696|ENST00000176183|DRD4	REV__ENSG00000069696|ENST00000176183|DRD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.8883361816406	2	456.299853	910.585153	-0.87945	-0.00040129	1.8073	0.00082465	0.92781	0.00042336	456.2998984583359	38.094	0.40798	37.873	37.613	38.021	-0.22149					15	11	2	0	0	0	0.03519	1	3108	3108		35.201	0	1	133610	+		749	20405	529	530	748	748					0.1262842283365444
AGINARSISI	10	Unmodified	_AGINARSISI_					0	0	0			REV__ENST00000357085.4_2_6:25966634-25966742:+|nuORF	REV__ENST00000357085.4_2_6:25966634-25966742:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.290283203125	2	501.290548	1000.56654	-0.32298	-0.00016191	0.75266	0.0003773	0.42968	0.0002154	501.2905862857756	88.352	1.9534	88.181	87.855	89.808	-0.17053					95	46	4	0	0	0	1.1266	1	10799	10799		29.17	1.2878	1	1265500	+		750	30818	530	531	749	749					0.06628261191815454
AGIQPTPH	8	Unmodified	_AGIQPTPH_					0	0	0		ENST00000581487.1_1_16:66655025-66655589:-|nuORF	ENST00000581487.1_1_16:66655025-66655589:-|nuORF	ENST00000581487.1_1_16:66655025-66655589:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.7185363769531	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	1.0574	1	12106	12106		23.037	3.6767	1	3611200			751	17165	531	532	750	750					0.006966735204173347
AGIVCRQL	8	Unmodified	_AGIVCRQL_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.90643310546875	2	430.244555	858.474557	0.26422	0.00011368	-2.9382	-0.0012641	-2.674	-0.0011505	430.24322249764487	38.777	0.56	38.551	38.246	38.806	-0.2257					20	14	2	0	0	0	0.027866	1	3177	3177		23.037	0	1	96528			752	8761	532	533	751	751					0.039658795737636865
AGKALHPQ	8	Unmodified	_AGKALHPQ_					0	0	0			REV__ENST00000485741.6_1_7:72424205-72425256:-|nuORF	REV__ENST00000485741.6_1_7:72424205-72425256:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.2306213378906	2	411.235045	820.455536	0.059622	2.4519E-05	2.0654	0.00084938	2.1251	0.0008739	411.23513945324356	27.693	0.75426	27.68	27.277	28.031	-0.012983					48	19	3	0	0	0	0.027866	1	1507	1507		24.203	0	1	844480	+		753	33567	533	534	752	752					0.03812666274370713
AGKDKIKV	8	Unmodified	_AGKDKIKV_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.2662048339844	2	429.774003	857.533452	2.4676	0.0010605	-2.5962	-0.0011158	-0.12857	-5.5258E-05	429.7728020811824	24.577	0.47522	24.396	24.072	24.547	-0.18089					14	10	2	0	0	0	0.027866	1	1039	1039		37.159	0	1	82414			754	5866	534	535	753	753					0.09898679139746491
AGKKAKKP	8	Unmodified	_AGKKAKKP_					0	0	0		ENSG00000124610|ENST00000244573|H1-1	ENSG00000124610|ENST00000244573|H1-1	ENSG00000124610|ENST00000244573|H1-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.559814453125	2	414.276712	826.538872	-0.40638	-0.00016835	0.49686	0.00020584	0.090482	3.7484E-05	414.276817841728	26.75	0.4608	26.586	26.419	26.88	-0.16331					15	10	2	0	0	0	0.027866	1	1392	1392		26.796	8.4717	1	73843			755	4064	535	536	754	754					0.11866402722228031
AGLETTYT	8	Unmodified	_AGLETTYT_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2620544433594	2	428.208358	854.402163	0.48161	0.00020623	-2.9653	-0.0012697	-2.4836	-0.0010635	428.207191001632	90.036	0.48325	90.05	89.798	90.281	0.013443					15	11	2	0	0	0	0.027866	1	11332	11332		52.299	20.344	1	169990			756	1746	536	537	755	755					-0.03086176018803144
AGLGIRLPL	9	Unmodified	_AGLGIRLPL_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2635498046875	2	455.297645	908.580737	0.10627	4.8385E-05	-0.068043	-3.098E-05	0.038228	1.7405E-05	455.29749959151667	63.555	0.76702	63.327	63.015	63.782	-0.22773					29	19	2	0	0	0	0.024541	1	7204	7204		24.203	10.427	1	542290			757	2764	537	538	756	756					0.1227895841074087
AGLIRQGL	8	Unmodified	_AGLIRQGL_					0	0	0			REV__ENST00000597423.1_1_19:59058531-59059226:+|nuORF	REV__ENST00000597423.1_1_19:59058531-59059226:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.2145080566406	2	414.25852	826.502486	-0.72274	-0.0002994	0.93279	0.00038642	0.21004	8.7013E-05	414.2586982473618	24.408	0.89091	24.361	24.044	24.935	-0.047148					38	19	3	0	0	0	0.027866	1	1051	1051		21.702	0	1	95326	+		758	35803	538	539	757	757					0.08229525825527162
AGLIRQGL	8	Unmodified	_AGLIRQGL_					0	0	0			REV__ENST00000597423.1_1_19:59058531-59059226:+|nuORF	REV__ENST00000597423.1_1_19:59058531-59059226:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.25852	826.502486	2.3107	0.00095724	-2.1241	-0.00087994	0.18659	7.7298E-05	414.25755553338814	24.517	0.30382	24.336	24.114	24.418	-0.18089	-0.024009	-0.0017654	NaN	8.8223	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38274	+		759	35803	538	539							0.08229525825527162
AGLLFLPMKP	10	Unmodified	_AGLLFLPMKP_					0	0	0			REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.794677734375	2	543.822638	1085.63072	-0.37834	-0.00020575	-0.14325	-7.7905E-05	-0.52159	-0.00028365	543.8223610111827	55.039	0.41489	55.039	54.869	55.284	0					21	11	3	0	0	0	0.03519	1	6086	6086		90.777	3.0224	1	317840	+		760	35372	539	540	758	758					0.09133325024390615
AGLLTFII	8	Unmodified	_AGLLTFII_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3;REV__nc|ENSG00000070961|P20020-5|ATP2B1	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.2547607421875	2	424.268022	846.521491	0.76076	0.00032276	-2.2261	-0.00094446	-1.4653	-0.0006217	424.2661124029039	25.334	0.75916	25.162	24.777	25.536	-0.17151					27	17	4	0	0	0	0.027866	1	1135	1135		26.796	12.132	1	137570	+		761	20367;20442	540	541	759	759					0.09209062396553236
AGLLTFII	8	Unmodified	_AGLLTFII_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3;REV__nc|ENSG00000070961|P20020-5|ATP2B1	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	424.268022	846.521491	-0.37448	-0.00015888	-4.051	-0.0017187	-4.4255	-0.0018776	424.2663311478716	25.468	0.58588	25.242	24.931	25.517	-0.22683	0.039722	-0.00024524	NaN	26.796	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95123	+		762	20367;20442	540	541							0.09209062396553236
AGLPAAFSSA	10	Unmodified	_AGLPAAFSSA_					0	0	0		ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.2318420410156	2	446.232168	890.449782	0.033022	1.4735E-05	-0.72532	-0.00032366	-0.6923	-0.00030893	446.23190028192755	101.14	1.7305	101.14	100.62	102.35	0					118	39	5	0	0	0	1.1166	2	12960	12960;12972		30.504	6.3009	1	6954500			763	16199	541	542	760;761	760					0.00017522972052574914
AGLPAAFSSA	10	Unmodified	_AGLPAAFSSA_					0	0	0		ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.23175048828125	2	446.232168	890.449782	0.088406	3.945E-05	-0.63717	-0.00028433	-0.54876	-0.00024488	446.23196670301775	101.18	2.1749	101.19	100.06	102.24	0.0090256					122	51	5	0	0	0	1.0541	1	12924	12924		38.806	3.1879	1	6913800			764	16199	541	542	762	762					0.00017522972052574914
AGLPAAFSSA	10	Unmodified	_AGLPAAFSSA_					0	0	0		ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.2319641113281	2	446.232168	890.449782	0.27475	0.0001226	-0.89263	-0.00039832	-0.61787	-0.00027572	446.2318420635589	101.24	1.993	101.24	100.76	102.76	-0.0054474					118	45	5	0	0	0	0.9856	4	12893	12857;12882;12893;12904		47.916	10.756	1	6672200			765	16199	541	542	763;764;765;766	765					0.00017522972052574914
AGLPAAFSSA	10	Unmodified	_AGLPAAFSSA_					0	0	0		ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	446.2318115234375	2	446.232168	890.449782	0.46896	0.00020926	-1.2353	-0.00055122	-0.76633	-0.00034196	446.23162918375465	101.61	1.585	101.48	100.95	102.53	-0.13156					112	36	5	0	0	0	1.0004	2	12591	12591;12640		45.952	7.1458	1	5166600			766	16199	541	542	767;768	767					0.00017522972052574914
AGLPAAFSSA	10	Unmodified	_AGLPAAFSSA_					0	0	0		ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	ENST00000529074.1_1_1:109560211-109584588:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	446.2317810058594	2	446.232168	890.449782	0.22578	0.00010075	-1.2036	-0.00053707	-0.9778	-0.00043632	446.23159610244517	101.7	1.5633	101.57	100.98	102.54	-0.12576					112	37	5	0	0	0	0.9856	2	12646	12646;12658		47.916	7.1374	1	4963200			767	16199	541	542	769;770	769					0.00017522972052574914
AGLQHLGL	8	Unmodified	_AGLQHLGL_					0	0	0		nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;ENSG00000158113|ENST00000339777|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.1553039550781	2	404.73742	807.460287	-0.58994	-0.00023877	0.94552	0.00038269	0.35558	0.00014392	404.7376237880623	32.835	0.36331	32.669	32.476	32.839	-0.16565					15	8	2	0	0	0	0.027866	1	2269	2269		20.482	0	1	131130			768	6646	542	543	771	771					0.048855504171342545
AGLQPGPGGLG	11	Unmodified	_AGLQPGPGGLG_					0	0	0			REV__ENST00000480661.1_1_1:6259306-6259615:-|nuORF	REV__ENST00000480661.1_1_1:6259306-6259615:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.22967529296875	2	462.250892	922.48723	-0.45684	-0.00021117	-0.63205	-0.00029217	-1.0889	-0.00050334	462.2504224900722	38.888	0.91096	38.79	38.358	39.269	-0.098755					41	24	2	0	0	0	0.024738	1	3344	3344		19.997	0	1	278920	+		769	33430	543	544	772	772					0.02288614237670572
AGLRRYPK	8	Unmodified	_AGLRRYPK_					0	0	0		ENSG00000082213|ENST00000325366|C5orf22;ENST00000511208.2_1_5:31532460-31535865:+|nuORF;ENST00000515409.5_1_5:31532460-31534525:+|nuORF	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7687072753906	2	480.790518	959.566484	-0.79447	-0.00038198	-1.1731	-0.000564	-1.9675	-0.00094598	480.78984937968977	44.241	0.52752	44.022	43.826	44.354	-0.21939					20	14	2	0	0	0	0.027866	1	4144	4144		40.573	5.3719	1	384470			770	1728	544	545	773	773					0.08508305982456932
AGLSIKNL	8	Unmodified	_AGLSIKNL_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.53546142578125	2	408.252903	814.491253	0.22234	9.0772E-05	0.40554	0.00016556	0.62788	0.00025633	408.252897293691	21.871	0.4814	21.68	21.372	21.853	-0.19072					20	9	3	0	0	0	0.027866	1	709	709		14.664	0	1	57799	+		771	21428	545	546	774	774					0.07658703731362948
AGLSTYLV	8	Unmodified	_AGLSTYLV_					0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.2303161621094	2	412.231636	822.448719	-0.48948	-0.00020178	-2.0699	-0.00085326	-2.5593	-0.001055	412.23071113677236	27.154	2.5776	27.235	26.249	28.827	0.081293					138	64	4	0	0	0	1.0017	1	1453	1453		37.028	1.8278	1	8910500	+		772	26753	546	547	775	775					0.03039308603149493
AGLTSQITRV	10	Unmodified	_AGLTSQITRV_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.302978515625	2	523.303655	1044.59276	-0.64645	-0.00033829	0.63779	0.00033376	-0.008659	-4.5313E-06	523.3039264969486	30.072	0.63937	29.828	29.482	30.122	-0.24415					39	14	4	0	0	0	1.0177	1	1909	1909		43.651	10.838	1	775960	+		773	28275	547	548	776	776					0.07224530363282611
AGLVVFLTANV	11	Unmodified	_AGLVVFLTANV_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3041381835938	2	552.326599	1102.63865	-0.76311	-0.00042148	-4.3486	-0.0024018	-5.1117	-0.0028233	552.3239276289066	92.47	0.83044	92.461	92.198	93.028	-0.0082855					30	19	2	0	0	0	0.024785	1	11725	11725		22.58	2.5829	1	72159			774	2368	548	549	777	777					0.09143175545500526
AGMLPWLQGI	10	Unmodified	_AGMLPWLQGI_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2444458007812	2	543.294245	1084.57394	-0.20505	-0.0001114	1.0713	0.00058201	0.86621	0.00047061	543.2934490068667	67.704	0.3309	67.47	67.345	67.676	-0.23375					12	7	2	0	0	0	0.03519	1	7803	7803		53.351	27.901	1	76746			775	10172	549	550	778	778					0.035032774678711576
AGMRPHRPG	9	Unmodified	_AGMRPHRPG_					0	0	0		ENST00000467155.6_1_17:46683509-46683713:+|nuORF	ENST00000467155.6_1_17:46683509-46683713:+|nuORF	ENST00000467155.6_1_17:46683509-46683713:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7561340332031	2	489.756153	977.497752	1.6722	0.00081899	-1.3963	-0.00068386	0.27593	0.00013514	489.7553395939245	19.741	1.5136	19.807	19.587	21.101	0.066195					71	30	4	0	0	0	0.92825	1	452	452		30.504	3.7075	1	617300			776	14828	550	551	779	779					0.008103184111178052
AGNEAAPLV	9	Unmodified	_AGNEAAPLV_					0	0	0			REV__ENST00000368190.7_1_1:157493863-157494031:-|nuORF	REV__ENST00000368190.7_1_1:157493863-157494031:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.240478515625	2	421.224342	840.434132	-0.2103	-8.8585E-05	-1.8487	-0.00077873	-2.059	-0.00086732	421.22355011499303	23.468	0.86349	23.288	22.743	23.607	-0.17989					22	19	2	0	0	0	0.024405	1	963	963		27.882	0	1	110130	+		777	31045	551	552	780	780					0.007532364549888371
AGNKSLPK	8	Unmodified	_AGNKSLPK_					0	0	0			REV__ENSG00000221900|ENST00000408890|POM121L12	REV__ENSG00000221900|ENST00000408890|POM121L12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.7557373046875	2	407.742702	813.470852	-0.19786	-8.0675E-05	-1.068	-0.00043548	-1.2659	-0.00051616	407.74223836373176	38.703	0.45685	38.477	38.246	38.702	-0.2257					16	11	2	0	0	0	0.027866	1	3217	3217		7.6903	0	1	92320	+		778	28837	552	553	781	781					0.05665533071567097
AGNNRAVE	8	Unmodified	_AGNNRAVE_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2212829589844	2	415.709391	829.404229	-0.25549	-0.00010621	0.58853	0.00024466	0.33303	0.00013845	415.70957132438394	24.422	1.2501	24.207	23.822	25.072	-0.2151					37	28	2	0	0	0	0.027866	1	1080	1080		15.642	0	1	184030			779	624	553	554	782	782					-0.017297024903427882
AGNSYIKYRLS	11	Unmodified	_AGNSYIKYRLS_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.26318359375	3	424.562938	1270.66699	-1.2237	-0.00051954	0.092515	3.9279E-05	-1.1312	-0.00048026	424.5628316767034	37.938	0.31066	37.856	37.706	38.017	-0.082516					12	8	2	0	0	0	0.024735	1	3131	3131		27.644	9.1129	1	78163			780	7399	554	555	783	783					0.04247873454778528
AGPGGAGTGR	10	Unmodified	_AGPGGAGTGR_					0	0	0		ENST00000329994.6_1_8:145582385-145582890:+|nuORF;ENST00000532887.5_1_8:145582352-145582532:+|nuORF	ENST00000329994.6_1_8:145582385-145582890:+|nuORF	ENST00000329994.6_1_8:145582385-145582890:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073059082031	2	400.704109	799.393664	1.4123	0.00056591	-1.4674	-0.00058799	-0.055104	-2.208E-05	400.70372851302074	23.51	0.58116	23.319	23.124	23.705	-0.19117					18	13	2	0	0	0	0.03519	1	959	959		34.173	7.4796	1	50808			781	12324	555	556	784	784					-0.014056851447662666
AGPGGAGTGR	10	Unmodified	_AGPGGAGTGR_					0	0	0		ENST00000329994.6_1_8:145582385-145582890:+|nuORF;ENST00000532887.5_1_8:145582352-145582532:+|nuORF	ENST00000329994.6_1_8:145582385-145582890:+|nuORF	ENST00000329994.6_1_8:145582385-145582890:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	400.704109	799.393664	0.95665	0.00038333	-0.48367	-0.00019381	0.47298	0.00018952	400.7040137191957	23.528	0.41458	23.326	23.153	23.567	-0.20193	0.0034738	0.00041743	NaN	34.173	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35335			782	12324	555	556							-0.014056851447662666
AGPGLLKAYSI	11	Unmodified	_AGPGLLKAYSI_					0	0	0		ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729	ENST00000550153.1_1_12:52641566-52642541:+|nuORF	ENST00000550153.1_1_12:52641566-52642541:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.31640625	2	545.318774	1088.623	-0.35893	-0.00019573	-3.8862	-0.0021192	-4.2451	-0.0023149	545.3165463924156	92.202	1.4758	92.061	91.66	93.136	-0.14131					107	34	4	0	0	0	1.0292	1	11283	11283		30.318	0	1	1496200		+	783	515	556	557	785	785					0.08222889028456848
AGPGRRPL	8	Unmodified	_AGPGRRPL_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.8876647949219	2	412.248486	822.48242	-0.062809	-2.5893E-05	0.36502	0.00015048	0.30221	0.00012459	412.24846994920426	27.719	0.5196	27.477	27.076	27.596	-0.24217					17	11	2	0	0	0	0.027866	1	1556	1556		37.028	0	1	102160	+		784	24724	557	558	786	786					0.06407774885553863
AGPHAVKK	8	Unmodified	_AGPHAVKK_					0	0	0		ENSG00000131142|ENST00000315626|CCL25	ENSG00000131142|ENST00000315626|CCL25	ENSG00000131142|ENST00000315626|CCL25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5927429199219	2	404.245412	806.476272	0.12184	4.9253E-05	-0.11961	-4.8353E-05	0.0022276	9.005E-07	404.24520843833903	37.985	0.47447	37.805	37.594	38.068	-0.17929					23	13	2	0	0	0	0.027866	1	3132	3132		21.702	13.471	1	377380			785	4500	558	559	787	787					0.06529256654039273
AGPHAVKK	8	Unmodified	_AGPHAVKK_					0	0	0		ENSG00000131142|ENST00000315626|CCL25	ENSG00000131142|ENST00000315626|CCL25	ENSG00000131142|ENST00000315626|CCL25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	2	404.245412	806.476272	0.50026	0.00020223	-2.109	-0.00085256	-1.6088	-0.00065033	404.24524390214106	26.976	0.21334	26.808	26.638	26.851	-0.16816					5	4	2	0	0	0	0.027866	1	1421	1421		13.775	0	1	29784			786	4500	558	559	788	788					0.06529256654039273
AGPHAVKK	8	Unmodified	_AGPHAVKK_					0	0	0		ENSG00000131142|ENST00000315626|CCL25	ENSG00000131142|ENST00000315626|CCL25	ENSG00000131142|ENST00000315626|CCL25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5924987792969	2	404.245412	806.476272	-1.0658	-0.00043085	0.95509	0.00038609	-0.11071	-4.4754E-05	404.24569366538225	38.03	0.61451	37.812	37.535	38.15	-0.21848					33	17	3	0	0	0	0.027866	1	3121	3121		21.702	17.717	1	803140			787	4500	558	559	789	789					0.06529256654039273
AGPITRKL	8	Unmodified	_AGPITRKL_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7398681640625	2	428.27417	854.533787	-0.30301	-0.00012977	-2.3562	-0.0010091	-2.6592	-0.0011389	428.2717841649369	22.351	0.14108	22.166	22.094	22.236	-0.18539					4	2	2	0	0	0	0.027866	1	773	773		33.516	10.473	1	5938.8	+		788	23765	559	560	790	790					0.1007009885960315
AGPKPKAH	8	Unmodified	_AGPKPKAH_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.2374572753906	2	403.237587	804.460622	-0.0070464	-2.8414E-06	0.29056	0.00011717	0.28352	0.00011433	403.23755128637663	29.767	1.5666	29.776	29.098	30.665	0.0086193					91	38	4	0	0	0	1.0133	1	1832	1832		35.201	1.6851	1	2744200			789	10188	560	561	791	791					0.050569701369909126
AGPLRAPGVI	10	Unmodified	_AGPLRAPGVI_					0	0	0			REV__ENST00000412565.2_3_14:24025103-24025394:-|nuORF	REV__ENST00000412565.2_3_14:24025103-24025394:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.79266357421875	2	475.792727	949.5709	-0.019626	-9.3378E-06	0.45006	0.00021413	0.43043	0.0002048	475.7926660800698	56.41	1.7741	56.246	55.658	57.432	-0.16432					76	48	2	0	0	0	0.75995	1	6257	6257		63.306	2.3343	1	2198400	+		790	32001	561	562	792	792					0.09409770405375184
AGPLRAPGVI	10	Unmodified	_AGPLRAPGVI_					0	0	0			REV__ENST00000412565.2_3_14:24025103-24025394:-|nuORF	REV__ENST00000412565.2_3_14:24025103-24025394:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	475.792727	949.5709	-0.41854	-0.00019914	0.69843	0.00033231	0.27989	0.00013317	475.7928349688582	56.13	1.0523	56.227	55.634	56.686	0.097893	-0.037568	0.00043385	NaN	63.306	67	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2458900	+		791	32001	561	562							0.09409770405375184
AGPRVQRGR	9	Unmodified	_AGPRVQRGR_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant;KMT2B|p.K553Nfs*52|1|0.25|ENSG00000272333|chr19:35720997-35720997|C/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.794189453125	2	498.794124	995.573694	-0.21043	-0.00010496	-3.7234	-0.0018572	-3.9338	-0.0019622	498.7921914251852	17.412	0.24988	17.205	17.065	17.315	-0.20669					7	4	2	0	0	0	0.67308	1	181	181		47.916	3.7988	1	43983			792	11013	562	563	793	793					0.07573038582904701
AGPSLVLVF	9	Unmodified	_AGPSLVLVF_					0	0	0			REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2456970214844	2	451.770929	901.527304	-0.18878	-8.5284E-05	-4.2667	-0.0019276	-4.4555	-0.0020129	451.7689175007362	20.275	0.6857	20.17	19.884	20.569	-0.10477					27	13	3	0	0	0	0.024325	1	518	518		40.573	0	1	199140	+		793	19775	563	564	794	794					0.07260160908231228
AGPTPPGPRKR	11	Unmodified	_AGPTPPGPRKR_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3297729492188	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.0521	2	11500	11500;11678		24.519	1.5628	1	14972000			794	2617	564	565	795;796	795					0.0855074758567298
AGPTPPGPRKR	11	Unmodified	_AGPTPPGPRKR_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.330810546875	2	567.330539	1132.64652	-0.10453	-5.9304E-05	-1.2225	-0.00069356	-1.327	-0.00075286	567.329698253714	93.908	1.2793	93.76	93.435	94.715	-0.14771					95	29	5	0	0	0	1.0238	1	11566	11566		31.53	5.4664	1	1243400			795	2617	564	565	797	797					0.0855074758567298
AGPYKHTK	8	Unmodified	_AGPYKHTK_					0	0	0		ENSG00000113396|ENST00000262462|SLC27A6	ENSG00000113396|ENST00000262462|SLC27A6	ENSG00000113396|ENST00000262462|SLC27A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2470703125	2	451.248152	900.481751	1.8902	0.00085297	-3.2513	-0.0014671	-1.361	-0.00061416	451.2465912084251	23.918	1.1514	23.737	23.09	24.241	-0.18089					49	26	3	0	0	0	0.71833	1	965	965		65.803	1.5959	1	1975000			796	3292	565	566	798	798					0.02752935445857929
AGQSKGYRPKL	11	Unmodified	_AGQSKGYRPKL_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	402.8612976074219	3	402.231412	1203.67241	0.035844	1.4418E-05	0.13325	5.3599E-05	0.1691	6.8017E-05	402.2313276324985	23.306	0.616	23.245	23.069	23.685	-0.060862					34	14	3	0	0	0	0.024747	1	932	932		39.873	1.1195	1	476580			797	2721	566	567	799	799					0.07871597037296851
AGRARPIGAL	10	Unmodified	_AGRARPIGAL_					0	0	0			REV__ENST00000257829.7_1_11:34127254-34129795:+|nuORF	REV__ENST00000257829.7_1_11:34127254-34129795:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.3022155761719	2	491.30125	980.587947	0.24764	0.00012166	2.5574	0.0012564	2.805	0.0013781	491.3024242683746	95.458	1.0687	95.462	95.009	96.078	0.0041199					59	24	3	0	0	0	1.0781	1	12108	12108		35.618	5.1146	1	1241700	+		798	29568	567	568	800	800					0.09687691011185962
AGRGLAERA	9	Unmodified	_AGRGLAERA_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.7572937011719	2	450.754133	899.493713	-0.19039	-8.5818E-05	0.7967	0.00035911	0.60631	0.0002733	450.7544012252087	20.295	0.58946	20.19	19.884	20.473	-0.10477					22	11	2	0	0	0	0.87448	1	514	514		34.173	1.3601	1	350170			799	5414	568	569	801	801					0.03994552189033129
AGRMRAPS	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AGRM(Oxidation (M))RAPS_		AGRM(1)RAPS		AGRM(41)RAPS	1	0	1		chr6:11735683-11754873|217|14.03|0.8|4.13|-|2|ADTRP,None|1	chr6:11735683-11754873|217|14.03|0.8|4.13|-|2|ADTRP,None|1	chr6:11735683-11754873|217|14.03|0.8|4.13|-|2|ADTRP,None|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.22900390625	2	452.226894	902.439234	0.13816	6.248E-05	2.5168	0.0011382	2.655	0.0012007	452.228130338477	102.79	1.1452	102.8	102.46	103.6	0.0054245					58	27	4	0	0	0	0.97924	1	13139	13139		40.573	7.057	1	3091700			800	410	569	570	802	802		9			-0.015887829540247367
AGRNAHKED	9	Unmodified	_AGRNAHKED_					0	0	0		ENST00000237937.7_1_9:74970312-74970396:-|nuORF	ENST00000237937.7_1_9:74970312-74970396:-|nuORF	ENST00000237937.7_1_9:74970312-74970396:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.8038024902344	2	499.244129	996.473705	-0.36796	-0.0001837	0.80981	0.00040429	0.44185	0.00022059	499.2442805628886	52.692	0.76091	52.503	51.993	52.754	-0.18982					21	18	2	0	0	0	0.024374	1	5488	5488		40.778	9.2484	1	147410			801	11265	570	571	803	803					-0.024672435415823202
AGRPKVQGG	9	Unmodified	_AGRPKVQGG_					0	0	0		ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25146484375	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	0.92825	1	9315	9315		30.504	1.3541	1	1872200			802	15793	571	572	804	804					0.04839453677391248
AGRRVRPAPL	10	Unmodified	_AGRRVRPAPL_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.8403930664062	2	546.841074	1091.66759	0.3982	0.00021775	-2.0973	-0.0011469	-1.6991	-0.00092914	546.8399841843885	99.748	1.3784	99.613	99.184	100.56	-0.13526					99	37	6	0	0	0	1.0781	2	12341	12341;12364		35.618	3.6634	1	10192000			803	11723	572	573	805;806	805					0.12542757685173456
AGRRVRPAPL	10	Unmodified	_AGRRVRPAPL_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8402709960938	2	546.841074	1091.66759	0.67566	0.00036948	-2.4362	-0.0013322	-1.7605	-0.00096274	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	1.0665	2	12355	12355;12373		37.159	3.6435	1	9262700			804	11723	572	573	807;808	807					0.12542757685173456
AGSDVDQEEIV	11	Unmodified	_AGSDVDQEEIV_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;nc|ENSG00000013561|Q9UBS8-2|RNF14	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.2651977539062	2	581.267133	1160.51971	-0.034595	-2.0109E-05	-3.799	-0.0022082	-3.8336	-0.0022283	581.2647201970696	107.42	0.20419	107.42	107.26	107.47	0					10	4	3	0	0	0	0.99553	1	13798	13798		37.812	2.1932	1	322580			805	918	573	574	809	809					-0.05412687940656724
AGSEENLRDDH	11	Unmodified	_AGSEENLRDDH_					0	0	0			REV__ENSG00000176986|ENST00000345254|SEC24C	REV__ENSG00000176986|ENST00000345254|SEC24C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.5597839355469	3	414.849696	1241.52726	0.27033	0.00011215	3.3756	0.0014004	3.646	0.0015125	414.85098586335533	19.397	1.1188	19.278	18.658	19.777	-0.11872					52	22	3	0	0	0	0.02477	1	335	335		22.562	0	1	87080	+		806	27072	574	575	810	810					-0.08384535620371025
AGSGGKKVK	9	Unmodified	_AGSGGKKVK_					0	0	0			REV__ENSG00000170608|ENST00000302177|FOXA3	REV__ENSG00000170608|ENST00000302177|FOXA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2314758300781	2	416.255977	830.497401	-0.042026	-1.7493E-05	0.088334	3.6769E-05	0.046308	1.9276E-05	416.2558659430648	21.546	0.48459	21.355	21.177	21.662	-0.19072					14	9	2	0	0	0	0.024523	1	664	664		15.642	5.3766	1	34902	+		807	26490	575	576	811	811					0.07537221962900276
AGTASAEVAL	10	Unmodified	_AGTASAEVAL_					0	0	0			REV__ENST00000499077.2_2_3:131080852-131082214:+|nuORF	REV__ENST00000499077.2_2_3:131080852-131082214:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	2	445.234907	888.455261	-0.69098	-0.00030765	4.1261	0.0018371	3.4351	0.0015294	445.23693035128133	29.634	0.42167	29.389	29.273	29.695	-0.24524					12	9	2	0	0	0	0.03519	1	1819	1819		60.972	0	1	48034	+		808	33895	576	577	812	812					0.006572017638518446
AGTIDTNIKL	10	Unmodified	_AGTIDTNIKL_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3004150390625	2	523.298039	1044.58152	-0.5436	-0.00028447	-1.1571	-0.0006055	-1.7007	-0.00088997	523.2976128933077	51.764	1.6523	51.764	51.212	52.864	0					140	44	5	0	0	0	0.26127	1	5570	5570		113.41	0	1	26642000	+		809	22644	577	578	813	813					0.061017082691250835
AGTIPRVPC	9	Unmodified	_AGTIPRVPC_					0	0	0		MUC4|p.S534C|1|0.26|ENSG00000145113|chr3:195789979-195789979|G/C|missense_variant	MUC4|p.S534C|1|0.26|ENSG00000145113|chr3:195789979-195789979|G/C|missense_variant	MUC4|p.S534C|1|0.26|ENSG00000145113|chr3:195789979-195789979|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2497863769531	2	457.249837	912.485122	-0.22733	-0.00010395	0.27116	0.00012399	0.043832	2.0042E-05	457.24980324559215	16.483	0.20539	16.275	16.162	16.367	-0.20777					15	7	3	0	0	0	0.92825	1	66	66		30.504	1.3541	1	37174			810	18004	578	579	814	814					0.02537862228200538
AGTKTKTT	8	Unmodified	_AGTKTKTT_					0	0	0		ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2323303222656	2	404.232168	806.449782	0.41357	0.00016718	-3.1091	-0.0012568	-2.6955	-0.0010896	404.2302553298039	87.257	1.8567	87.078	86.349	88.206	-0.17875					110	44	3	0	0	0	1.0574	1	10588	10588		15.642	2.6826	1	982170			811	12748	579	580	815	815					0.03881522972039875
AGTKTKTT	8	Unmodified	_AGTKTKTT_					0	0	0		ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.23223876953125	2	404.232168	806.449782	1.3175	0.00053259	-3.7186	-0.0015032	-2.401	-0.00097058	404.22997602134683	87.229	1.783	87.093	86.284	88.067	-0.13613					73	42	2	0	0	0	1.0442	1	10603	10603		30.318	12.953	1	840690			812	12748	579	580	816	816					0.03881522972039875
AGTKTKTT	8	Unmodified	_AGTKTKTT_					0	0	0		ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	404.232168	806.449782	1.4715	0.00059482	-4.4746	-0.0018088	-3.0032	-0.001214	404.2294444737669	87.023	1.8736	87.023	86.171	88.044	0	-0.048557	-0.00052378	NaN	30.318	72	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	794560			813	12748	579	580							0.03881522972039875
AGTKTKTT	8	Unmodified	_AGTKTKTT_					0	0	0		ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	404.232168	806.449782	0.72924	0.00029478	-2.0747	-0.00083868	-1.3455	-0.0005439	404.230915558389	87.124	1.4485	87.089	85.956	87.405	-0.035355	0.017595	0.0014165	NaN	30.318	66	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810290			814	12748	579	580							0.03881522972039875
AGTKTKTT	8	Unmodified	_AGTKTKTT_					0	0	0		ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.232168	806.449782	2.4845	0.0010043	-6.7118	-0.0027131	-4.2273	-0.0017088	404.22878129226825	87.028	2.1744	87.049	85.816	87.991	0.021263	-0.022416	-0.0023324	NaN	30.318	110	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742670			815	12748	579	580							0.03881522972039875
AGTQQRLQ	8	Unmodified	_AGTQQRLQ_					0	0	0		ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF	ENSG00000137171|ENST00000347162|KLC4	ENSG00000137171|ENST00000347162|KLC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.24688720703125	2	451.246141	900.477728	0.36809	0.0001661	2.774	0.0012517	3.142	0.0014178	451.24721146039826	24.015	0.75046	23.8	23.467	24.218	-0.2151					34	16	3	0	0	0	0.50239	1	1008	1008		85.359	0.19866	1	1223200			816	5095	580	581	817	817					0.023508459521394798
AGTSPARGR	9	Unmodified	_AGTSPARGR_					0	0	0			REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000143630|ENST00000368358|HCN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.9337158203125	2	436.738483	871.462413	0.5948	0.00025977	-0.26394	-0.00011527	0.33086	0.0001445	436.7382676542607	20.848	0.49203	20.652	20.385	20.877	-0.19577					21	9	3	0	0	0	0.024263	1	589	589		51.335	8.9393	1	152650	+		817	24268	581	582	818	818					0.021539791549457732
AGTSPARGR	9	Unmodified	_AGTSPARGR_					0	0	0			REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000143630|ENST00000368358|HCN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.738483	871.462413	-0.83679	-0.00036546	0.54645	0.00023865	-0.29035	-0.0001268	436.738719550257	20.479	0.38198	20.479	20.274	20.656	0	-0.082038	0.00025792	NaN	51.335	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25432	+		818	24268	581	582							0.021539791549457732
AGTSPARGR	9	Unmodified	_AGTSPARGR_					0	0	0			REV__ENSG00000143630|ENST00000368358|HCN3	REV__ENSG00000143630|ENST00000368358|HCN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.738483	871.462413	-0.28386	-0.00012397	0.24079	0.00010516	-0.043073	-1.8811E-05	436.7385852157718	20.651	0.28568	20.547	20.375	20.661	-0.10477	-0.014378	-9.0663E-06	NaN	51.335	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40183	+		819	24268	581	582							0.021539791549457732
AGVAAPPQTP	10	Unmodified	_AGVAAPPQTP_					0	0	0			REV__ENST00000323037.4_1_7:30324461-30324557:+|nuORF	REV__ENST00000323037.4_1_7:30324461-30324557:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7449645996094	2	454.745442	907.476331	0.63166	0.00028725	-1.4842	-0.00067495	-0.85257	-0.0003877	454.744633969462	97.413	1.6833	97.422	96.795	98.478	0.0089111					83	38	3	0	0	0	1.1329	1	12408	12408		27.882	0	1	250170	+		820	30368	582	583	819	819					0.01889211863363016
AGVAPWKP	8	Unmodified	_AGVAPWKP_					0	0	0		ENST00000512792.2_1_12:112193923-112194274:+|nuORF	ENST00000512792.2_1_12:112193923-112194274:+|nuORF	ENST00000512792.2_1_12:112193923-112194274:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.19476318359375	2	413.234513	824.454474	-0.46524	-0.00019225	-3.8513	-0.0015915	-4.3165	-0.0017837	413.23291767517736	23.039	0.60038	22.854	22.415	23.015	-0.18539					16	12	2	0	0	0	0.027866	1	886	886		25.45	8.7452	1	32640			821	15862	583	584	820	820					0.03522451905462276
AGVAPWKP	8	Unmodified	_AGVAPWKP_					0	0	0		ENST00000512792.2_1_12:112193923-112194274:+|nuORF	ENST00000512792.2_1_12:112193923-112194274:+|nuORF	ENST00000512792.2_1_12:112193923-112194274:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	413.234513	824.454474	-0.33815	-0.00013973	-4.3035	-0.0017783	-4.6416	-0.0019181	413.23271773998056	23.087	0.26175	23.163	22.933	23.195	0.076239	0.15465	-0.00013881	NaN	25.45	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32722			822	15862	583	584							0.03522451905462276
AGVHEHLEQNL	11	Unmodified	_AGVHEHLEQNL_					0	0	0			REV__ENST00000564812.5_1_16:67289762-67292232:+|nuORF	REV__ENST00000564812.5_1_16:67289762-67292232:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2273864746094	3	416.210676	1245.6102	-0.20439	-8.5071E-05	-1.7558	-0.0007308	-1.9602	-0.00081587	416.54482876171915	41.541	0.38952	41.311	41.119	41.508	-0.2303					12	9	2	0	0	0	0.024782	1	3677	3677		25.126	16.891	1	31638	+		823	35260	584	585	821	821					-0.0027817410170882795
AGVILPLAKP	10	Unmodified	_AGVILPLAKP_					0	0	0			REV__ENST00000437575.5_1_1:21106393-21106933:-|nuORF	REV__ENST00000437575.5_1_1:21106393-21106933:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2765197753906	2	489.820953	977.627353	-0.65307	-0.00031989	0.67996	0.00033306	0.026891	1.3172E-05	489.8211881945	64.648	1.1509	64.693	63.975	65.126	0.045502					58	30	3	0	0	0	0.03519	1	7535	7535		37.159	4.3467	1	817730	+		824	22934	585	586	822	822					0.1376439824202862
AGVLVQPVLQG	11	Unmodified	_AGVLVQPVLQG_					0	0	0		ENST00000554481.1_1_15:91489865-91490237:+|nuORF	ENST00000554481.1_1_15:91489865-91490237:+|nuORF	ENST00000554481.1_1_15:91489865-91490237:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.2904052734375	2	540.824224	1079.63389	-1.3037	-0.00070508	3.1266	0.0016909	1.8229	0.00098586	540.825811277169	66.59	0.37229	66.345	66.05	66.422	-0.24517					13	9	2	0	0	0	0.024762	1	7623	7623		45.972	2.3462	1	163630			825	16658	586	587	823	823					0.09726291402739662
AGVPLHPL	8	Unmodified	_AGVPLHPL_					0	0	0			REV__nc|ENSG00000106852|Q9UPM6-2|LHX6	REV__nc|ENSG00000106852|Q9UPM6-2|LHX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.8658142089844	2	402.242338	802.470124	0.092384	3.7161E-05	-0.30124	-0.00012117	-0.20885	-8.4009E-05	402.2420940925825	44.358	0.49591	44.114	43.904	44.4	-0.2444					21	13	2	0	0	0	0.027866	1	4098	4098		16.705	0	1	341600	+		826	36548	587	588	824	824					0.06098738422531369
AGVSLHRQS	9	Unmodified	_AGVSLHRQS_					0	0	0			REV__OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	REV__OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.7589416503906	2	477.759415	953.504277	-0.4565	-0.0002181	-0.16517	-7.8913E-05	-0.62167	-0.00029701	477.75944184245384	38.366	1.054	38.187	37.522	38.576	-0.17929					63	29	4	0	0	0	0.45795	1	3164	3164		62.107	1.1355	1	3290800	+		827	24348	588	589	825	825					0.02566534843469981
AGVVHVALL	9	Unmodified	_AGVVHVALL_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.7658996582031	2	439.776545	877.538538	-0.93254	-0.00041011	1.5382	0.00067645	0.60563	0.00026634	439.7770709890168	37.21	0.38505	36.99	36.807	37.192	-0.2195					15	9	2	0	0	0	0.024389	1	2969	2969		21.702	7.0382	1	140550			828	5184	589	590	826	826					0.09486983002375382
AGVVHVALL	9	Unmodified	_AGVVHVALL_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.7657470703125	2	439.776545	877.538538	0.53973	0.00023736	0.23443	0.0001031	0.77416	0.00034046	439.7765782082727	37.198	0.54791	36.989	36.806	37.354	-0.2092					18	13	2	0	0	0	0.024289	1	3009	3009		39.021	5.5059	1	119120			829	5184	589	590	827	827					0.09486983002375382
AGVVRGRP	8	Unmodified	_AGVVRGRP_					0	0	0		ENST00000603791.1_1_6:3751774-3752740:+|nuORF	ENST00000603791.1_1_6:3751774-3752740:+|nuORF	ENST00000603791.1_1_6:3751774-3752740:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2488098144531	2	406.248486	810.48242	0.91382	0.00037124	-0.70868	-0.0002879	0.20513	8.3334E-05	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0572	1	10743	10743		28.254	0	1	86727000			830	17548	590	591	828	828					0.06959774885558545
AGWNAYIDNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNL_					1	0	0		PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant;ENSG00000108518|ENST00000225655|PFN1;CON__P02584	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.778076171875	2	589.77747	1177.54039	-0.56168	-0.00033126	1.4558	0.00085859	0.8941	0.00052732	589.7779046581467	106.42	0.54253	106.42	106.16	106.7	0					30	17	2	0	0	0	0.29487	4	13657	13645;13657;13665;13671		109.48	56.542	1	145810		+	831	504	591	592	829;830;831;832	830					-0.041280527703293046
AGWNAYIDNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNL_					1	0	0		PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant;ENSG00000108518|ENST00000225655|PFN1;CON__P02584	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	589.77747	1177.54039	-0.85867	-0.00050642	1.8062	0.0010653	0.94756	0.00055885	590.2803546856088	106.35	0.5078	106.35	106.09	106.6	-0.0013199	-0.047545	0.00062785	NaN	109.48	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177700		+	832	504	591	592							-0.041280527703293046
AGWNAYIDNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNL_					1	0	0		PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant;ENSG00000108518|ENST00000225655|PFN1;CON__P02584	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	PFN1|p.T98Hfs*10|1|0.2|ENSG00000108518|chr17:4946661-4946662|-/G|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	589.77747	1177.54039	0.64808	0.00038222	0.41258	0.00024333	1.0607	0.00062555	590.2794339086877	106.42	0.37989	106.42	106.23	106.61	0.00014496	0.022842	-0.001016	NaN	109.48	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138900		+	833	504	591	592							-0.041280527703293046
AHAAAGRR	8	Unmodified	_AHAAAGRR_					0	0	0			REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	REV__ENST00000533293.1_1_14:24779443-24780712:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.7250061035156	2	405.228085	808.441617	0.16821	6.8162E-05	-2.3576	-0.00095538	-2.1894	-0.00088722	405.22716710224046	20.35	1.1581	20.245	19.411	20.569	-0.10477					30	23	2	0	0	0	0.027866	1	521	521		28.254	10.889	1	80960	+		834	34599	592	593	833	833					0.02973433565932737
AHAAVPENPVY	11	Unmodified	_AHAAVPENPVY_					0	0	0		ENST00000457507.1_1_1:99473841-99474009:+|nuORF	ENST00000457507.1_1_1:99473841-99474009:+|nuORF	ENST00000457507.1_1_1:99473841-99474009:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.7770385742188	2	584.293288	1166.57202	-0.96451	-0.00056355	2.5369	0.0014823	1.5724	0.00091877	584.7956888735891	63.301	0.39921	63.117	62.873	63.272	-0.18386					15	9	2	0	0	0	0.024727	1	7142	7142		39.253	17.293	1	125950			835	14613	593	594	834	834					-0.004600600163939816
AHAAVPENPVY	11	Unmodified	_AHAAVPENPVY_					0	0	0		ENST00000457507.1_1_1:99473841-99474009:+|nuORF	ENST00000457507.1_1_1:99473841-99474009:+|nuORF	ENST00000457507.1_1_1:99473841-99474009:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	584.293288	1166.57202	1.227	0.00071694	-0.26853	-0.0001569	0.9585	0.00056004	584.2934029418045	62.983	0.27405	63.037	62.888	63.162	0.054104	-0.038598	-0.0027635	NaN	24.519	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100180			836	14613	593	594							-0.004600600163939816
AHAKRYPNN	9	Unmodified	_AHAKRYPNN_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2591552734375	2	535.778139	1069.54173	-0.77647	-0.00041602	-1.8472	-0.0009897	-2.6237	-0.0014057	535.775089456536	52.996	0.43272	53.092	52.868	53.3	0.095669					20	11	2	0	0	0	0.024506	1	5665	5665		23.042	10.083	1	222130	+		837	20167	594	595	835	835					0.009736261090893095
AHALGRLGG	9	Unmodified	_AHALGRLGG_					0	0	0		ENST00000297375.4_1_7:155250854-155251064:+|nuORF	ENST00000297375.4_1_7:155250854-155251064:+|nuORF	ENST00000297375.4_1_7:155250854-155251064:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2461242675781	2	426.245944	850.477334	0.80944	0.00034502	-0.49132	-0.00020942	0.31812	0.0001356	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	0.78069	1	10545	10545		40.573	0	1	12732000			838	11862	595	596	836	836					0.046114710229517186
AHCLRSRR	8	Unmodified	_AHCLRSRR_					0	0	0		ENST00000548421.2_1_14:105767313-105767607:-|nuORF	ENST00000548421.2_1_14:105767313-105767607:-|nuORF	ENST00000548421.2_1_14:105767313-105767607:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.79583740234375	2	499.774877	997.5352	-0.089632	-4.4796E-05	4.162	0.0020801	4.0724	0.0020353	500.27886830093354	18.089	0.34686	17.883	17.664	18.011	-0.20669					10	6	2	0	0	0	0.027866	1	261	261		40.573	13.88	1	13760			839	16552	596	597	837	837					0.03633409676729116
AHERRVLD	8	Unmodified	_AHERRVLD_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.27239990234375	2	498.27269	994.530826	-0.60177	-0.00029985	0.40601	0.00020231	-0.19576	-9.7542E-05	498.2728608118492	25.19	0.56574	24.963	24.665	25.231	-0.22683					26	12	3	0	0	0	0.96719	1	1171	1171		42.474	1.9018	1	603640	+		840	20390	597	598	838	838					0.03334223734805164
AHFYAIVVS	9	Unmodified	_AHFYAIVVS_					0	0	0		ENST00000422506.5_1_22:24056493-24059433:-|nuORF;ENST00000451837.5_1_22:24056493-24059477:-|nuORF	ENST00000422506.5_1_22:24056493-24059433:-|nuORF	ENST00000422506.5_1_22:24056493-24059433:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.29071044921875	2	503.77146	1005.52837	-0.065676	-3.3086E-05	-2.8913	-0.0014566	-2.957	-0.0014897	503.769690861302	55.164	0.32132	54.958	54.758	55.08	-0.20613					14	8	2	0	0	0	0.024436	1	5856	5856		30.504	11.4	1	277830			841	14007	598	599	839	839					0.025823752771316322
AHGCLLLLL	9	Unmodified	_AHGCLLLLL_					0	0	0			REV__ENSG00000168509|ENST00000336751|HJV	REV__ENSG00000168509|ENST00000336751|HJV	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.2376708984375	2	476.786056	951.557558	0.22621	0.00010786	4.072	0.0019415	4.2982	0.0020493	476.78790885575114	32.8	0.32226	32.608	32.457	32.779	-0.19261					12	7	2	0	0	0	0.024541	1	2281	2281		29.842	5.6388	1	86745	+		842	26269	599	600	840	840					0.07984196301777047
AHGKLRRE	8	Unmodified	_AHGKLRRE_					0	0	0		ENST00000494302.5_1_X:153178504-153191656:-|nuORF;ENST00000470209.5_1_X:153178504-153191656:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.3005676269531	2	483.783225	965.551896	-0.17153	-8.2981E-05	-1.8763	-0.0009077	-2.0478	-0.00099068	483.78466561825826	60.366	0.27161	60.112	59.94	60.212	-0.25373					10	6	2	0	0	0	0.027866	1	6683	6683		25.45	6.0902	1	110110			843	1915	600	601	841	841					0.06774233834323695
AHGKLRRE	8	Unmodified	_AHGKLRRE_					0	0	0		ENST00000494302.5_1_X:153178504-153191656:-|nuORF;ENST00000470209.5_1_X:153178504-153191656:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.783225	965.551896	1.2662	0.00061257	2.3629	0.0011431	3.6291	0.0017557	483.78404988622447	59.677	0.33096	59.677	59.482	59.813	0	-0.13595	0.00055913	NaN	33.516	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163010			844	1915	600	601							0.06774233834323695
AHGKLRRE	8	Unmodified	_AHGKLRRE_					0	0	0		ENST00000494302.5_1_X:153178504-153191656:-|nuORF;ENST00000470209.5_1_X:153178504-153191656:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.783225	965.551896	-0.11394	-5.5122E-05	2.8189	0.0013637	2.7049	0.0013086	483.7844072260262	59.927	0.47511	59.727	59.463	59.938	-0.20016	-0.085928	0.0010003	NaN	33.516	18	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174760			845	1915	600	601							0.06774233834323695
AHGKLRRE	8	Unmodified	_AHGKLRRE_					0	0	0		ENST00000494302.5_1_X:153178504-153191656:-|nuORF;ENST00000470209.5_1_X:153178504-153191656:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;nc|ENSG00000089820|P98171-2|ARHGAP4	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	ENST00000494302.5_1_X:153178504-153191656:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.783225	965.551896	-0.35921	-0.00017378	2.9667	0.0014353	2.6075	0.0012615	483.7846902926432	59.65	0.48093	59.735	59.389	59.869	0.085686	-0.077318	0.0011434	NaN	33.516	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186380			846	1915	600	601							0.06774233834323695
AHGVVLRP	8	Unmodified	_AHGVVLRP_					0	0	0		nc|ENSG00000144771|Q9HBL6-2|LRTM1;ENSG00000144771|ENST00000273286|LRTM1	nc|ENSG00000144771|Q9HBL6-2|LRTM1	nc|ENSG00000144771|Q9HBL6-2|LRTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.7586975097656	2	424.758687	847.502821	0.14365	6.1017E-05	0.22033	9.3589E-05	0.36398	0.00015461	424.75863889463136	31.678	1.0629	31.437	31.149	32.211	-0.24109					53	25	4	0	0	0	1.0133	1	2126	2126		35.201	6.9464	1	1817700			847	5766	601	602	842	842					0.07296945545363087
AHGYQEKV	8	Unmodified	_AHGYQEKV_					0	0	0		ENST00000382734.9_1_22:25851789-25855395:+|nuORF;ENSG00000244752|ENST00000398215|CRYBB2	ENST00000382734.9_1_22:25851789-25855395:+|nuORF	ENST00000382734.9_1_22:25851789-25855395:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7541809082031	2	466.235242	930.45593	0.67424	0.00031436	1.6238	0.00075705	2.298	0.0010714	466.23579036013876	37.298	1.2812	37.33	36.608	37.889	0.032269					59	33	2	0	0	0	0.027866	1	3019	3019		24.203	0	1	1213800			848	10826	602	603	843	843					-0.012079587964308303
AHHMGRQVM	9	Unmodified	_AHHMGRQVM_					0	0	0			REV__ENST00000433411.7_1_17:18062924-18082138:+|nuORF	REV__ENST00000433411.7_1_17:18062924-18082138:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7567749023438	2	533.755295	1065.49604	-0.15271	-8.151E-05	1.731	0.00092391	1.5783	0.0008424	533.7561266004002	58.912	1.1232	58.731	58.426	59.549	-0.18134					80	27	5	0	0	0	0.90698	1	6523	6523		31.955	2.8053	1	6587700	+		849	32404	603	604	844	844					-0.0340905866914909
AHIAAKRSP	9	Unmodified	_AHIAAKRSP_					0	0	0		chr2:112980148-112984535|135|46.07|0.1|8.83|+|2|IL36G,None|1	chr2:112980148-112984535|135|46.07|0.1|8.83|+|2|IL36G,None|1	chr2:112980148-112984535|135|46.07|0.1|8.83|+|2|IL36G,None|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.7795104980469	2	475.780151	949.545748	3.8485	0.0018311	-3.7315	-0.0017754	0.11702	5.5676E-05	475.77812053042516	18.161	0.44175	18.161	17.99	18.431	0					14	8	2	0	0	0	0.78069	1	266	266		40.573	1.5511	1	117840			850	367	604	605	845	845					0.06895715602797736
AHIAAKRSP	9	Unmodified	_AHIAAKRSP_					0	0	0		chr2:112980148-112984535|135|46.07|0.1|8.83|+|2|IL36G,None|1	chr2:112980148-112984535|135|46.07|0.1|8.83|+|2|IL36G,None|1	chr2:112980148-112984535|135|46.07|0.1|8.83|+|2|IL36G,None|1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	475.780151	949.545748	0.6774	0.0003223	-0.48559	-0.00023103	0.19182	9.1262E-05	475.77969282192964	18.36	0.39476	18.228	18.056	18.45	-0.13147	-0.043956	0.0024409	NaN	40.573	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121740			851	367	604	605							0.06895715602797736
AHILDALGEV	10	Unmodified	_AHILDALGEV_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2853393554688	2	519.284931	1036.55531	-0.35869	-0.00018626	1.3362	0.00069387	0.97751	0.00050761	519.2853713589377	51.491	0.80351	51.215	50.589	51.393	-0.27643					32	19	2	0	0	0	0.85955	1	5278	5278		56.721	14.325	1	2062800	+		852	23100	605	606	846	846					0.03849439097643881
AHILNYYR	8	Unmodified	_AHILNYYR_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000129159|P48547|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2784423828125	2	525.279983	1048.54541	-0.34013	-0.00017866	2.1249	0.0011162	1.7847	0.00093749	525.2811532949961	84.879	0.91248	84.905	84.456	85.369	0.025536					37	21	2	0	0	0	0.027866	1	10543	10543		33.516	4.366	1	646940			853	4333	606	607	847	847					0.023082958829490963
AHKLLRFIMKN	11	Unmodified	_AHKLLRFIMKN_					0	0	0			REV__ENSG00000165182|ENST00000379211|CXorf58	REV__ENSG00000165182|ENST00000379211|CXorf58	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.6081848144531	3	457.607825	1369.80165	0.77892	0.00035644	-0.36968	-0.00016917	0.40924	0.00018727	457.6077655587918	98.898	1.8258	98.761	97.927	99.752	-0.13625					121	44	3	0	0	0	1.0764	1	12249	12249		17.833	0.6664	1	383140	+		854	25850	607	608	848	848					0.13153655395717578
AHKSPLLGR	9	Unmodified	_AHKSPLLGR_					0	0	0			REV__chr5:128377877-128378771|342|14.21|0.76|4.22|-|0|FBN2,FBN2|1	REV__chr5:128377877-128378771|342|14.21|0.76|4.22|-|0|FBN2,FBN2|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.780029296875	2	489.795801	977.577048	-0.37763	-0.00018496	0.21452	0.00010507	-0.16311	-7.9889E-05	489.7957898782809	22.181	0.85308	22.106	21.841	22.694	-0.075296					48	17	4	0	0	0	0.024523	1	733	733		21.96	3.6355	1	1050400	+		855	19439	608	609	849	849					0.08736288636896461
AHLAAIERW	9	Unmodified	_AHLAAIERW_					0	0	0		ENSG00000095981|ENST00000437525|KCNK16;nc|ENSG00000095981|Q96T55|KCNK16;KCNK16|p.D159Y|1|0.58|ENSG00000095981|chr6:39317806-39317806|C/A|missense_variant;nc|ENSG00000095981|Q96T55-5|KCNK16;nc|ENSG00000095981|Q96T55-4|KCNK16	ENSG00000095981|ENST00000437525|KCNK16	ENSG00000095981|ENST00000437525|KCNK16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7927856445312	2	533.793258	1065.57196	-1.3264	-0.00070805	-0.017498	-9.3401E-06	-1.3439	-0.00071739	533.7934082322464	44.539	1.3348	44.324	44.01	45.345	-0.21505					100	36	4	0	0	0	0.33245	1	4173	4173		71.296	0	1	16249000			856	2044	609	610	850	850					0.04179984774282275
AHLELNESAW	10	Unmodified	_AHLELNESAW_					0	0	0		ENSG00000204396|ENST00000375688|VWA7;nc|ENSG00000204396|Q9Y334-2|VWA7	ENSG00000204396|ENST00000375688|VWA7	ENSG00000204396|ENST00000375688|VWA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2823486328125	2	585.28292	1168.55129	0.16961	9.9272E-05	0.15981	9.3532E-05	0.32942	0.0001928	585.2829859978439	50.959	1.2461	50.778	50.572	51.818	-0.18071					89	32	4	0	0	0	0.17599	1	5254	5254		124.08	8.5861	1	9209500			857	10342	610	611	851	851					-0.02624650396069228
AHLGLVLLVL	10	Unmodified	_AHLGLVLLVL_					0	0	0			REV__ENSG00000123561|ENST00000372563|SERPINA7	REV__ENSG00000123561|ENST00000372563|SERPINA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3135375976562	2	524.349877	1046.6852	-0.18416	-9.6565E-05	-1.7535	-0.00091947	-1.9377	-0.001016	524.3489910686793	73.226	0.18701	73.235	73.068	73.255	0.0096512					5	4	2	0	0	0	0.03519	1	8853	8853		19.36	2.8868	1	165150	+		858	22704	611	612	852	852					0.16372660167462527
AHLIGFGLDI	10	Unmodified	_AHLIGFGLDI_					0	0	0		ENST00000452143.5_1_1:62902154-62905498:+|nuORF	ENST00000452143.5_1_1:62902154-62905498:+|nuORF	ENST00000452143.5_1_1:62902154-62905498:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2738647460938	2	528.297842	1054.58113	-0.98004	-0.00051775	-1.167	-0.00061651	-2.147	-0.0011343	528.2967440889829	92.772	0.3448	92.772	92.579	92.924	0					11	7	2	0	0	0	0.03519	1	11746	11746		44.117	0	1	79748			859	14532	612	613	853	853					0.05602333339948018
AHLIGFGLDI	10	Unmodified	_AHLIGFGLDI_					0	0	0		ENST00000452143.5_1_1:62902154-62905498:+|nuORF	ENST00000452143.5_1_1:62902154-62905498:+|nuORF	ENST00000452143.5_1_1:62902154-62905498:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2734985351562	2	528.297842	1054.58113	0.077909	4.1159E-05	-1.1048	-0.00058364	-1.0268	-0.00054248	528.297049384705	92.695	0.46757	92.702	92.461	92.929	0.0077286					13	10	2	0	0	0	0.03519	1	11681	11681		55.504	2.1528	1	43413			860	14532	612	613	854	854					0.05602333339948018
AHLIVFNYF	9	Unmodified	_AHLIVFNYF_					0	0	0			REV__ENSG00000127666|ENST00000248244|TICAM1	REV__ENSG00000127666|ENST00000248244|TICAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7817993164062	2	562.300384	1122.58622	-0.03764	-2.1165E-05	-4.0844	-0.0022966	-4.122	-0.0023178	562.2979273562441	47.605	1.0376	47.418	47.084	48.121	-0.18684					60	27	3	0	0	0	0.024466	1	4621	4621		18.324	1.8513	1	1161300	+		861	22945	613	614	855	855					0.029826372025581804
AHLIVFNYF	9	Unmodified	_AHLIVFNYF_					0	0	0			REV__ENSG00000127666|ENST00000248244|TICAM1	REV__ENSG00000127666|ENST00000248244|TICAM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.300384	1122.58622	-0.29194	-0.00016416	-3.8385	-0.0021584	-4.1304	-0.0023225	562.2981109548853	47.55	1.1032	47.453	47.083	48.187	-0.096649	-0.032498	0.00010638	NaN	33.516	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1230700	+		862	22945	613	614							0.029826372025581804
AHLIVFNYF	9	Unmodified	_AHLIVFNYF_					0	0	0			REV__ENSG00000127666|ENST00000248244|TICAM1	REV__ENSG00000127666|ENST00000248244|TICAM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	562.300384	1122.58622	-0.34737	-0.00019533	-3.8424	-0.0021606	-4.1898	-0.0023559	562.298084134191	47.862	1.062	47.586	47.194	48.257	-0.27598	0.10059	0.00010198	NaN	33.516	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989200	+		863	22945	613	614							0.029826372025581804
AHLQPDELL	9	Unmodified	_AHLQPDELL_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MSMS	OPSCC_40_ClassI_Rep-3	6	518.2774658203125	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.255	1	51.075	50.575	51.575	-0.18071								0	0	0	0.1457	1	5251	5251		82.305	8.14	1		+		864	25347	614	615	856	856					0.023771525806068894
AHLTVEKIFA	10	Unmodified	_AHLTVEKIFA_					0	0	0		ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.823974609375	2	564.824224	1127.63389	0.38099	0.00021519	0.028378	1.6029E-05	0.40937	0.00023122	564.8240828814527	102.12	0.99087	101.99	101.5	102.49	-0.12931					55	23	4	0	0	0	0.74632	1	12663	12663		64.207	9.431	1	129430			865	15316	615	616	857	857					0.07518291402743671
AHLTVEKIFA	10	Unmodified	_AHLTVEKIFA_					0	0	0		ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8239135742188	2	564.824224	1127.63389	0.19347	0.00010928	0.31234	0.00017642	0.50581	0.00028569	564.8240843949924	102.11	0.64049	101.98	101.64	102.28	-0.12666					41	16	3	0	0	0	0.88896	1	12690	12690		54.776	7.119	1	357960			866	15316	615	616	858	858					0.07518291402743671
AHNQQTTEQL	10	Unmodified	_AHNQQTTEQL_					0	0	0			REV__ENSG00000047662|ENST00000265018|FAM184B	REV__ENSG00000047662|ENST00000265018|FAM184B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2827758789062	2	585.280909	1168.54726	0.31206	0.00018265	3.474	0.0020333	3.786	0.0022159	585.2828750619565	50.865	1.2401	50.753	50.563	51.803	-0.11163					98	32	4	0	0	0	0.34101	1	5244	5244		104.75	17.05	1	8097000	+		867	20131	616	617	859	859					-0.0302673988976494
AHNRMHRF	8	Unmodified	_AHNRMHRF_					0	0	0			REV__ENSG00000159720|ENST00000290949|ATP6V0D1	REV__ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.3154296875	2	534.767052	1067.51955	-1.3473	-0.00072049	3.7185	0.0019885	2.3712	0.001268	534.7696845108844	44.34	0.72628	44.096	43.711	44.438	-0.2444					42	19	3	0	0	0	0.027866	1	4133	4133		47.916	0	1	309590	+		868	25272	617	618	860	860					-0.011508768403473368
AHNRNTITD	9	Unmodified	_AHNRNTITD_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2696533203125	2	521.257237	1040.49992	-0.34723	-0.000181	2.2414	0.0011683	1.8941	0.00098733	521.2582039073085	75.468	0.28842	75.195	75.018	75.306	-0.27267					11	6	2	0	0	0	0.024263	1	8895	8895		51.335	8.9393	1	108910			869	4665	618	619	861	861					-0.01870974370103795
AHPLQRPCQS	10	Unmodified	_AHPLQRPCQS_					0	0	0		ENSG00000105393|ENST00000598188|BABAM1	ENSG00000105393|ENST00000598188|BABAM1	ENSG00000105393|ENST00000598188|BABAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2962646484375	2	568.785107	1135.55566	0.24161	0.00013742	-1.4111	-0.00080263	-1.1695	-0.00066521	568.7845714271805	20.99	0.72883	20.813	20.336	21.065	-0.17721					18	14	2	0	0	0	0.03519	1	641	641		27.882	7.8855	1	16103			870	2668	619	620	862	862					-0.0066946445413123
AHPVLPTPQF	10	Unmodified	_AHPVLPTPQF_					0	0	0		ENST00000493581.1_1_9:33442297-33442579:-|nuORF	ENST00000493581.1_1_9:33442297-33442579:-|nuORF	ENST00000493581.1_1_9:33442297-33442579:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.80517578125	2	553.803291	1105.59203	0.30213	0.00016732	-2.4055	-0.0013322	-2.1034	-0.0011649	553.8019148751201	68.248	0.60486	68.017	67.835	68.439	-0.23047					31	14	3	0	0	0	0.64538	1	7884	7884		71.877	4.3838	1	1155600			871	15507	620	621	863	863					0.04345735714196053
AHPVVPLKV	9	Unmodified	_AHPVVPLKV_					0	0	0			REV__ENSG00000127241|ENST00000296280|MASP1	REV__ENSG00000127241|ENST00000296280|MASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2926330566406	2	480.30547	958.596387	-0.84428	-0.00040551	1.5011	0.00072097	0.65679	0.00031546	480.3067626591387	55.777	0.25092	55.875	55.782	56.033	0.098015					9	6	2	0	0	0	0.024517	1	6124	6124		26.796	12.132	1	241230	+		872	22922	621	622	864	864					0.11543244927804608
AHQQLIQP	8	Unmodified	_AHQQLIQP_					0	0	0		ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENST00000545930.5_1_11:61082914-61091715:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.7817077636719	2	467.758884	933.503215	-0.72861	-0.00034081	0.63543	0.00029723	-0.093184	-4.3588E-05	467.7590347328362	29.496	0.72969	29.251	28.924	29.654	-0.24524					23	16	3	0	0	0	0.027866	1	1814	1814		40.573	0	1	296580			873	16501	622	623	865	865					0.03380320474570908
AHQSHQKKEL	10	Unmodified	_AHQSHQKKEL_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5511474609375	3	402.551033	1204.63127	1.4397	0.00057954	-0.94035	-0.00037854	0.49933	0.00020101	402.5506780523661	23.38	0.80973	23.189	22.851	23.66	-0.19117					52	18	4	0	0	0	0.99077	1	885	885		47.228	13.306	1	3524000	+		874	27967	623	624	866	866					0.03713835997814385
AHQVPSAKP	9	Unmodified	_AHQVPSAKP_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.7816162109375	2	467.758884	933.503215	-0.43871	-0.00020521	0.18032	8.4348E-05	-0.25839	-0.00012086	467.75884068147434	29.336	0.77087	29.163	28.594	29.365	-0.17258					21	17	2	0	0	0	0.024261	1	1799	1799		23.523	11.316	1	283700	+		875	21788	624	625	867	867					0.033803204745595394
AHRRLKTAM	9	Unmodified	_AHRRLKTAM_					0	0	0			REV__ENST00000395499.5_1_6:32144640-32144751:-|nuORF	REV__ENST00000395499.5_1_6:32144640-32144751:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.760498046875	2	542.313835	1082.61312	-0.67603	-0.00036662	-3.9875	-0.0021625	-4.6636	-0.0025291	543.3134838406824	41.059	0.42487	40.924	40.712	41.137	-0.13553					19	10	3	0	0	0	0.024427	1	3631	3631		42.396	11.892	1	147890	+		876	31703	625	626	868	868					0.07511422542097534
AHSASSFK	8	Unmodified	_AHSASSFK_					0	0	0			REV__EPHA6|p.D952H|2|0.43|ENSG00000080224|chr3:97720330-97720330|G/C|missense_variant	REV__EPHA6|p.D952H|2|0.43|ENSG00000080224|chr3:97720330-97720330|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.7083435058594	2	417.70886	833.403166	0.45495	0.00019004	-1.1998	-0.00050116	-0.74485	-0.00031113	417.7081311418408	98.053	1.0099	98.053	97.594	98.604	0					44	23	3	0	0	0	1.0574	1	12539	12539		25.45	1.2474	1	264120	+		877	35999	626	627	869	869					-0.020199168592398564
AHSASSFK	8	Unmodified	_AHSASSFK_					0	0	0			REV__EPHA6|p.D952H|2|0.43|ENSG00000080224|chr3:97720330-97720330|G/C|missense_variant	REV__EPHA6|p.D952H|2|0.43|ENSG00000080224|chr3:97720330-97720330|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.7083435058594	2	417.70886	833.403166	0.55168	0.00023044	-1.2014	-0.00050183	-0.64971	-0.00027139	417.7080655695169	98.109	1.1415	98.119	97.771	98.913	0.010239					40	26	2	0	0	0	1.0574	1	12493	12493		25.45	1.2474	1	301490	+		878	35999	626	627	870	870					-0.020199168592398564
AHVDVENGM	9	Unmodified	_AHVDVENGM_					0	0	0			REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF	REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.21405029296875	2	486.216192	970.41783	0.42603	0.00020714	-3.5268	-0.0017148	-3.1008	-0.0015077	486.21443569005066	101.78	2.0865	101.61	100.71	102.8	-0.17178					129	49	3	0	0	0	0.85329	1	12694	12694		35.618	5.1146	1	202350	+		879	20126	627	628	871	871					-0.06856212773402603
AHVEEILKQ	9	Unmodified	_AHVEEILKQ_					0	0	0			REV__nc|ENSG00000042753|P53680-2|AP2S1	REV__nc|ENSG00000042753|P53680-2|AP2S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7532958984375	2	533.798206	1065.58186	-1.2278	-0.00065541	0.76701	0.00040943	-0.46081	-0.00024598	533.7986232883223	60.495	0.48281	60.319	60.076	60.559	-0.1761					17	11	2	0	0	0	0.024323	1	6704	6704		44.117	0	1	74439	+		880	20102	628	629	872	872					0.05169127988983746
AHVTSHVV	8	Unmodified	_AHVTSHVV_					0	0	0			REV__ENST00000344795.7_1_20:35240861-35240933:+|nuORF	REV__ENST00000344795.7_1_20:35240861-35240933:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.7585754394531	2	425.232502	848.450451	0.27181	0.00011558	0.042875	1.8232E-05	0.31469	0.00013382	425.2325091356043	31.859	1.0639	31.674	31.321	32.385	-0.18503					46	24	3	0	0	0	0.027866	1	2113	2113		29.842	0	1	358390	+		881	30692	629	630	873	873					0.020163624117572
AHWGPPLPT	9	Unmodified	_AHWGPPLPT_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.785400390625	2	488.255977	974.497401	-0.66009	-0.00032229	0.98619	0.00048151	0.3261	0.00015922	488.25644263972924	44.522	0.20227	44.559	44.375	44.578	0.0369					7	5	2	0	0	0	0.024497	1	4176	4176		28.254	0	1	47312			882	2678	630	631	874	874					0.009132219628781968
AIAEKNRAR	9	Unmodified	_AIAEKNRAR_					0	0	0		ENSG00000101605|ENST00000356443|MYOM1;nc|ENSG00000101605|P52179-2|MYOM1	ENSG00000101605|ENST00000356443|MYOM1	ENSG00000101605|ENST00000356443|MYOM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8216552734375	2	514.801614	1027.58868	-0.52965	-0.00027266	-3.8938	-0.0020045	-4.4234	-0.0022772	515.2995421091952	56.578	0.14585	56.578	56.497	56.643	0					5	3	2	0	0	0	0.024477	1	6321	6321		35.618	11.416	1	46637			883	2339	631	632	875	875					0.07598485660219012
AIALLRVL	8	Unmodified	_AIALLRVL_					0	0	0			REV__ENST00000276569.7_1_8:66546285-66546405:-|nuORF	REV__ENST00000276569.7_1_8:66546285-66546405:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.8025207519531	2	434.802563	867.590573	-0.67817	-0.00029487	0.83446	0.00036283	0.15629	6.7957E-05	434.8027786390961	65.961	0.99223	65.748	65.421	66.414	-0.21327					63	24	4	0	0	0	0.9224	1	7573	7573		49.211	4.6797	1	3002400	+		884	29852	633	633	876	876					0.15148146416129293
AIALLRVL	8	Unmodified	_AIALLRVL_					0	0	0			REV__ENST00000276569.7_1_8:66546285-66546405:-|nuORF	REV__ENST00000276569.7_1_8:66546285-66546405:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.80279541015625	2	434.802563	867.590573	-0.028794	-1.252E-05	0.10652	4.6316E-05	0.077727	3.3796E-05	434.80246974338013	65.915	1.0267	65.664	65.353	66.38	-0.25112					59	25	3	0	0	0	0.9224	1	7523	7523		49.211	2.4444	1	3429700	+		885	29852	633	633	877	877					0.15148146416129293
AIAMIFITSM	10	Unmodified	_AIAMIFITSM_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3348388671875	2	549.290314	1096.56607	-1.6445	-0.00090332	-2.2165	-0.0012175	-3.861	-0.0021208	549.2890390178395	29.444	0.31888	29.444	29.333	29.652	0					10	7	2	0	0	0	0.03519	1	1832	1832		51.335	29.376	1	40274	+		886	23604	634	634	878	878					0.02165382156067608
AIANDAVNI	9	Unmodified	_AIANDAVNI_					0	0	0			REV__FBXL16|p.D258N|1|0.44|ENSG00000127585|chr16:695785-695785|C/T|missense_variant	REV__FBXL16|p.D258N|1|0.44|ENSG00000127585|chr16:695785-695785|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2684326171875	2	450.742899	899.471246	-0.019332	-8.7137E-06	-0.11489	-5.1788E-05	-0.13423	-6.0502E-05	450.74282598582255	48.766	0.59019	48.766	48.482	49.072	0					33	16	3	0	0	0	0.02435	1	5038	5038		42.396	8.2236	1	474960	+		887	36027	635	635	879	879					0.01748908000740812
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	419.773681640625	2	419.773471	837.53239	-0.03391	-1.4235E-05	0.42894	0.00018006	0.39503	0.00016582	419.77348408317516	78.634	1.4881	78.634	78.001	79.489	0					76	35	4	0	0	0	0.084323	4	9720	9720;9729;9742;9754		116.12	15.762	1	3179900			888	696	636	636	880;881;882;883	880					0.1071246477083605
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	419.77374267578125	2	419.773471	837.53239	0.20091	8.4336E-05	0.22868	9.5995E-05	0.42959	0.00018033	419.7734366172029	78.773	1.1202	78.58	78.216	79.337	-0.1921					80	26	4	0	0	0	0.084323	3	9718	9718;9731;9743		116.12	15.762	1	3080000			889	696	636	636	884;885;886	884					0.1071246477083605
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	419.77362060546875	2	419.773471	837.53239	0.020591	8.6435E-06	0.50405	0.00021159	0.52464	0.00022023	419.77354303584826	78.656	1.1569	78.672	78.315	79.472	0.01609					73	27	4	0	0	0	0.0402	4	9684	9650;9659;9672;9684		133.45	17.328	1	3080400			890	696	636	636	887;888;889;890	890					0.1071246477083605
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	419.7735595703125	2	419.773471	837.53239	0.11358	4.7678E-05	0.34017	0.00014279	0.45375	0.00019047	419.77349388856055	78.779	0.8912	78.524	78.212	79.103	-0.25471					41	20	3	0	0	0	0.14584	2	9392	9392;9407		100.36	25.506	1	961500			891	696	636	636	891;892	891					0.1071246477083605
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	419.77337646484375	2	419.773471	837.53239	0.29577	0.00012416	0.14662	6.1549E-05	0.44239	0.0001857	419.77341125769897	78.689	0.92982	78.457	78.176	79.106	-0.23141					61	21	4	0	0	0	0.14584	1	9400	9400		100.36	14.451	1	871390			892	696	636	636	893	893					0.1071246477083605
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	419.7733459472656	2	419.773471	837.53239	0.35965	0.00015097	0.0057859	2.4288E-06	0.36543	0.0001534	419.773344675942	78.657	1.1043	78.501	78	79.104	-0.15591					67	25	4	0	0	0	0.22343	1	9369	9369		85.909	13.289	1	828200			893	696	636	636	894	894					0.1071246477083605
AIARGLVKDA	10	Unmodified	_AIARGLVKDA_					0	0	0		ENST00000556123.1_1_14:69968394-69968652:+|nuORF	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.269775390625	2	507.308741	1012.60293	-0.82217	-0.0004171	1.7985	0.00091238	0.9763	0.00049529	507.3095847196362	45.026	0.3376	44.927	44.71	45.048	-0.099445					15	8	3	0	0	0	0.03519	1	4214	4214		45.972	16.823	1	141750			894	16701	637	637	895	895					0.09713138088511641
AIARRSLNA	9	Unmodified	_AIARRSLNA_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2906799316406	2	486.290882	970.567212	-0.67396	-0.00032774	-0.60744	-0.00029539	-1.2814	-0.00062313	486.29071516082763	27.583	2.1938	27.583	27.215	29.408	0					129	55	5	0	0	0	0.83071	1	1506	1506		37.159	1.5408	1	37180000	+		895	23724	638	638	896	896					0.08075100631504029
AIASEQGII	9	Unmodified	_AIASEQGII_					0	0	0			REV__LRP5-CLPB|1|fusion	REV__LRP5-CLPB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2480773925781	2	451.2531	900.491647	-0.34483	-0.0001556	-3.5208	-0.0015888	-3.8656	-0.0017444	451.2500016287783	39.6	2.9552	39.377	38.857	41.812	-0.22311					140	77	4	0	0	0	0.45795	1	3396	3396		62.107	5.3864	1	2303300	+		896	36330	639	639	897	897					0.03742078660570769
AIASEQGII	9	Unmodified	_AIASEQGII_					0	0	0			REV__LRP5-CLPB|1|fusion	REV__LRP5-CLPB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.24761962890625	2	451.2531	900.491647	-0.21624	-9.7577E-05	-3.5673	-0.0016097	-3.7835	-0.0017073	451.24998592801467	39.625	2.8572	39.396	38.906	41.763	-0.22836					114	75	3	0	0	0	0.42604	1	3361	3361		64.207	7.4862	1	3105100	+		897	36330	639	639	898	898					0.03742078660570769
AIAYLIVK	8	Unmodified	_AIAYLIVK_					0	0	0		ENSG00000177917|ENST00000326446|ARL6IP6	ENSG00000177917|ENST00000326446|ARL6IP6	ENSG00000177917|ENST00000326446|ARL6IP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.7456970214844	2	445.789121	889.56369	-0.19516	-8.7002E-05	2.535	0.0011301	2.3398	0.0010431	445.7914909451756	24.663	0.21402	24.488	24.34	24.554	-0.17484					6	4	2	0	0	0	0.027866	1	1079	1079		13.775	0	1	18285			898	8775	640	640	899	899					0.11449037804948148
AICFYYSSL	9	Unmodified	_AICFYYSSL_					0	0	0			REV__nc|ENSG00000082556|P41145-2|OPRK1	REV__nc|ENSG00000082556|P41145-2|OPRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2349243164062	2	533.749336	1065.48412	-0.052341	-2.7937E-05	-0.31393	-0.00016756	-0.36627	-0.0001955	533.7493371925506	58.683	0.48279	58.495	58.275	58.758	-0.18705					25	12	3	0	0	0	0.024325	1	6635	6635		40.573	6.4001	1	556670	+		899	20699	641	641	900	900					-0.0460039693134604
AICIIHLN	8	Unmodified	_AICIIHLN_					0	0	0		ENST00000572017.1_1_16:10958826-10982354:-|nuORF	ENST00000572017.1_1_16:10958826-10982354:-|nuORF	ENST00000572017.1_1_16:10958826-10982354:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.793212890625	2	448.754756	895.494958	-0.52589	-0.00023599	3.5076	0.001574	2.9817	0.001338	448.75611938344616	30.579	0.37313	30.653	30.461	30.834	0.074316					13	8	2	0	0	0	0.027866	1	1934	1934		31.955	4.0726	1	85721			900	17053	642	642	901	901					0.04303050233579597
AICLVLASR	9	Unmodified	_AICLVLASR_					0	0	0			REV__ENST00000375736.8_2_13:111806157-111857643:+|nuORF	REV__ENST00000375736.8_2_13:111806157-111857643:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.2818908691406	2	473.281137	944.547722	-1.11	-0.00052533	1.1036	0.0005223	-0.0064081	-3.0329E-06	473.2815250605979	65.546	0.74036	65.333	65.094	65.834	-0.21327					41	17	3	0	0	0	0.29104	1	7501	7501		76.847	15.875	1	1241800	+		901	31333	643	643	902	902					0.07323008296384614
AICLVLASR	9	Unmodified	_AICLVLASR_					0	0	0			REV__ENST00000375736.8_2_13:111806157-111857643:+|nuORF	REV__ENST00000375736.8_2_13:111806157-111857643:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2819519042969	2	473.281137	944.547722	-0.62122	-0.00029401	0.54782	0.00025927	-0.073406	-3.4742E-05	473.28125591307196	65.589	0.61737	65.338	65.027	65.644	-0.25112					38	14	3	0	0	0	0.40179	1	7483	7483		65.803	2.4969	1	1247400	+		902	31333	643	643	903	903					0.07323008296384614
AICNRDLL	8	Unmodified	_AICNRDLL_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3;nc|ENSG00000088280|Q8TDY4-2|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2478942871094	2	459.247295	916.480036	0.26226	0.00012044	-0.6326	-0.00029052	-0.37034	-0.00017008	459.2469119549165	43.834	0.64527	43.865	43.558	44.203	0.030827					32	17	2	0	0	0	0.845	1	4087	4087		55.504	9.532	1	3841600			903	1864	644	644	904	904					0.018455583655850205
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2796020507812	2	547.279846	1092.54514	-0.54425	-0.00029786	0.95331	0.00052173	0.40906	0.00022387	547.2802265118132	59.024	0.63271	58.837	58.509	59.141	-0.18795					47	15	4	0	0	0	0.067814	2	6517	6505;6517		122.18	55.747	1	3939200			904	2117	645	645	905;906	906					0.002568313724395921
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2793579101562	2	547.279846	1092.54514	0.14043	7.6856E-05	-0.063062	-3.4513E-05	0.077371	4.2344E-05	547.2796340617772	58.902	0.60585	58.721	58.426	59.032	-0.18133					46	14	4	0	0	0	0.16638	2	6499	6499;6512		95.815	39.183	1	3144000			905	2117	645	645	907;908	907					0.002568313724395921
AIDEDVLRY	9	Unmodified	_AIDEDVLRY_					0	0	0		nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.2803955078125	2	547.279846	1092.54514	0.24541	0.00013431	-0.14708	-8.0496E-05	0.098325	5.3811E-05	547.279639756891	59.036	0.59481	58.795	58.502	59.096	-0.24165					45	14	4	0	0	0	0.053401	2	6498	6498;6510		127.46	53.207	1	4307200			906	2117	645	645	909;910	909					0.002568313724395921
AIDETVLTI	9	Unmodified	_AIDETVLTI_					0	0	0			REV__nc|ENSG00000186088|A4D1B5-2|GSAP	REV__nc|ENSG00000186088|A4D1B5-2|GSAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7725830078125	2	487.773865	973.533177	0.1009	4.9218E-05	0.093272	4.5496E-05	0.19418	9.4714E-05	487.7738171943202	85.762	1.0746	85.567	85.215	86.29	-0.19508					53	24	3	0	0	0	0.15029	1	10378	10378		99.375	17.07	1	1490700	+		907	37024	646	646	911	911					0.04535214629231632
AIDKIVKT	8	Unmodified	_AIDKIVKT_					0	0	0			REV__nc|ENSG00000107938|Q3B7T1-4|EDRF1	REV__nc|ENSG00000107938|Q3B7T1-4|EDRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	2	444.28166	886.548768	-0.71572	-0.00031798	1.7191	0.00076374	1.0033	0.00044576	444.2821917375498	29.766	0.33811	29.52	29.316	29.654	-0.24524					12	7	2	0	0	0	0.027866	1	1819	1819		29.15	0	1	31885	+		908	21699	647	647	912	912					0.10095545936940198
AIDPLPVGR	9	Unmodified	_AIDPLPVGR_					0	0	0			REV__ENST00000322147.8_2_11:65306929-65307783:-|nuORF	REV__ENST00000322147.8_2_11:65306929-65307783:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.76922607421875	2	469.276909	936.539266	-0.20396	-9.5716E-05	-0.19163	-8.9928E-05	-0.39559	-0.00018564	469.2768829595471	48.584	1.0514	48.431	47.99	49.041	-0.15277					86	29	5	0	0	0	0.024205	1	4918	4918		20.947	0	1	4826200	+		909	30356	648	648	913	913					0.06845777651426488
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.2823486328125	2	551.282389	1100.55022	-0.22287	-0.00012286	-0.41794	-0.0002304	-0.64081	-0.00035327	551.2821694012316	61.858	0.91095	61.644	61.334	62.244	-0.21375					80	22	5	0	0	0	0.041068	6	6947	6914;6923;6935;6947;6960;6972		132.76	57.715	1	21454000			910	4418	649	649	914;915;916;917;918;919	917					0.003971352350617963
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.2821655273438	2	551.282389	1100.55022	-0.87075	-0.00048003	0.10307	5.6821E-05	-0.76768	-0.00042321	551.2824718586478	61.773	1.3051	61.596	61.078	62.383	-0.17781					97	32	5	0	0	0	0.041068	6	6928	6906;6916;6928;6940;6952;6967		132.76	69.224	1	22418000			911	4418	649	649	920;921;922;923;924;925	922					0.003971352350617963
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.2821655273438	2	551.282389	1100.55022	-0.15292	-8.4301E-05	-0.73921	-0.00040752	-0.89213	-0.00049182	551.2819964085371	61.944	0.9064	61.687	61.383	62.29	-0.25725					87	22	5	0	0	0	0.048057	6	6935	6913;6923;6935;6947;6959;6974		129.42	61.102	1	25567000			912	4418	649	649	926;927;928;929;930;931	928					0.003971352350617963
AIDTYQEF	8	Unmodified	_AIDTYQEF_					0	0	0		nc|ENSG00000213218|P0DML3-3|CSH2;nc|ENSG00000213218|P0DML3-2|CSH2;nc|ENSG00000204414|Q14406-2|CSHL1;ENSG00000213218|ENST00000392886|CSH2;ENSG00000136488|ENST00000316193|CSH1;ENSG00000204414|ENST00000309894|CSHL1	nc|ENSG00000213218|P0DML3-3|CSH2	nc|ENSG00000213218|P0DML3-3|CSH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.27117919921875	2	493.726915	985.439277	-0.57102	-0.00028193	4.3162	0.002131	3.7452	0.0018491	493.7288659123109	65.961	2.5158	65.719	63.895	66.41	-0.24145					131	62	3	0	0	0	0.027866	1	7360	7360		76.847	26.822	1	955310			913	5021	650	650	932	932					-0.054025044730451555
AIDVVNLFAP	10	Unmodified	_AIDVVNLFAP_					0	0	0			REV__nc|ENSG00000138430|Q9NTK5-3|OLA1	REV__nc|ENSG00000138430|Q9NTK5-3|OLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2741088867188	2	529.797675	1057.5808	-0.63645	-0.00033719	-2.9493	-0.0015625	-3.5858	-0.0018997	529.796006791408	46.944	0.91507	46.944	46.515	47.43	0					38	24	3	0	0	0	0.03519	1	4611	4611		68.787	10.005	1	608170	+		914	23854	651	651	933	933					0.05430913620079991
AIDWFHEW	8	Unmodified	_AIDWFHEW_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76450753-76471822:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3475341796875	2	552.250892	1102.48723	-0.45238	-0.00024983	-2.2612	-0.0012487	-2.7135	-0.0014985	552.2493286785004	32.127	0.46749	31.969	31.737	32.204	-0.15772					23	10	3	0	0	0	0.027866	1	2148	2148		37.028	11.454	1	309090			915	9658	652	652	934	934					-0.05991385762331447
AIEEQLVSN	9	Unmodified	_AIEEQLVSN_					0	0	0			REV__ENSG00000166351|ENST00000299443|POTED	REV__ENSG00000166351|ENST00000299443|POTED	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.82379150390625	2	501.758746	1001.50294	0.24449	0.00012268	-2.2881	-0.0011481	-2.0436	-0.0010254	501.75719213137506	41.821	0.47477	41.821	41.579	42.053	0					19	13	2	0	0	0	0.024427	1	3836	3836		34.173	0	1	112360	+		916	26006	653	653	935	935					0.0022485596406340846
AIEETTVIVP	10	Unmodified	_AIEETTVIVP_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.766845703125	2	536.300247	1070.58594	0.3471	0.00018615	-3.9949	-0.0021425	-3.6478	-0.0019563	536.2976998629564	36.925	0.47818	36.716	36.445	36.923	-0.2092					16	11	2	0	0	0	0.03519	1	2932	2932		37.159	0	1	70008	+		917	37281	654	654	936	936					0.05347172692017921
AIELVHNK	8	Unmodified	_AIELVHNK_					0	0	0			REV__ENSG00000009694|ENST00000371130|TENM1	REV__ENSG00000009694|ENST00000371130|TENM1	MSMS	OPSCC_40_ClassI_Rep-3	6	462.271240234375	2	462.269084	922.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.16	1	101.98	101.48	102.48	-0.17178								0	0	0	0.83467	1	12675	12675		31.955	3.7006	1		+		918	19893	655	655	937	937					0.05925491134371441
AIEQVRAI	8	Unmodified	_AIEQVRAI_					0	0	0		nc|ENSG809|P63128|ERVK-9_pol;nc|ENSG816|P62685|ERVK-8_gag;nc|ENSG856|P87889|ERVK-10_gag;nc|ENSG846|Q9YNA8|ERVK-19_gag;nc|ENSG841|P62683|ERVK-21_gag;nc|ENSG838|P63145|ERVK-24_gag;nc|ENSG827|Q7LDI9|ERVK-6_gag;nc|ENSG820|P63130|ERVK-7_gag;nc|ENSG810|P63126|ERVK-9_gag;nc|ENSG800|P62684|HERVK_113_gag;nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG809|P63128|ERVK-9_pol;nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2692565917969	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.81662	1	3219	3219		57.811	2.3071	1	136700000			919	18851;18850	656	656	938	938					0.07029491134380805
AIEVRSLQS	9	Unmodified	_AIEVRSLQS_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.78173828125	2	501.782556	1001.55056	-0.9087	-0.00045597	0.32691	0.00016404	-0.58179	-0.00029193	501.78258866395646	28.58	0.79931	28.58	28.191	28.99	0					44	18	3	0	0	0	0.19099	1	1677	1677		90.37	2.1929	1	1499300			920	3986	657	657	939	939					0.04984554954910436
AIEVRSLQS	9	Unmodified	_AIEVRSLQS_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7818298339844	2	501.782556	1001.55056	-0.58724	-0.00029467	-0.008166	-4.0975E-06	-0.59541	-0.00029877	501.78240977670066	28.519	0.92817	28.515	28.157	29.085	-0.0042					44	21	3	0	0	0	0.18915	1	1666	1666		90.777	8.0262	1	1379500			921	3986	657	657	940	940					0.04984554954910436
AIEYIDAVK	9	Unmodified	_AIEYIDAVK_					0	0	0		nc|ENSG00000120875|Q13115-2|DUSP4;ENSG00000120875|ENST00000240100|DUSP4	nc|ENSG00000120875|Q13115-2|DUSP4	nc|ENSG00000120875|Q13115-2|DUSP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2821044921875	2	511.281857	1020.54916	-0.32982	-0.00016863	-0.56388	-0.0002883	-0.89369	-0.00045693	511.2818360109181	61.686	0.85048	61.429	61.008	61.859	-0.25725					51	20	4	0	0	0	0.4752	1	6908	6908		60.972	0	1	2131500			922	3843	658	658	941	941					0.03970920866140659
AIFADPNL	8	Unmodified	_AIFADPNL_					0	0	0			REV__ENSG00000203837|ENST00000369230|PNLIPRP3	REV__ENSG00000203837|ENST00000369230|PNLIPRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.2662658691406	2	430.729261	859.443968	1.0395	0.00044775	-3.718	-0.0016014	-2.6784	-0.0011537	430.72750511110934	20.764	0.34438	20.833	20.612	20.956	0.068901					9	6	2	0	0	0	0.027866	1	520	520		47.916	0	1	19310	+		923	28548	659	659	942	942					0.008624244603652187
AIFFWSRP	8	Unmodified	_AIFFWSRP_					0	0	0			REV__ENST00000476899.5_1_3:157828228-157828384:+|nuORF	REV__ENST00000476899.5_1_3:157828228-157828384:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.287109375	2	512.27417	1022.53379	1.0099	0.00051733	4.2568	0.0021806	5.2666	0.002698	512.2761276540956	58.931	0.79935	58.744	58.386	59.186	-0.18705					49	21	3	0	0	0	0.027866	1	6652	6652		31.955	10.253	1	574330	+		924	33316	660	660	943	943					0.02342098859617181
AIFHSACTSL	10	Unmodified	_AIFHSACTSL_					0	0	0			REV__ENSG00000172769|ENST00000641865|OR5B3	REV__ENSG00000172769|ENST00000641865|OR5B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.29638671875	2	525.257859	1048.50117	-0.79581	-0.00041801	-1.2888	-0.00067694	-2.0846	-0.0010949	525.758488006243	80.943	0.11719	80.967	80.89	81.007	0.023903					4	2	2	0	0	0	0.03519	1	9992	9992		37.159	1.5408	1	22967	+		925	26708	661	661	944	944					-0.021144763255506405
AIFILYYV	8	Unmodified	_AIFILYYV_					0	0	0		nc|ENSG00000129810|Q5FBB7-3|SGO1;nc|ENSG00000129810|Q5FBB7-2|SGO1;nc|ENSG00000129810|Q5FBB7|SGO1;nc|ENSG00000129810|Q5FBB7-7|SGO1	nc|ENSG00000129810|Q5FBB7-3|SGO1	nc|ENSG00000129810|Q5FBB7-3|SGO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2782287597656	2	501.288954	1000.56336	0.16888	8.4659E-05	3.6504	0.0018299	3.8193	0.0019146	501.7916218272648	79.753	0.67062	79.534	79.202	79.873	-0.21922					24	15	2	0	0	0	0.027866	1	9564	9564		24.504	2.5441	1	115120			926	18262	662	662	945	945					0.06309618085083457
AIFKKCKP	8	Unmodified	_AIFKKCKP_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30517578125	2	467.780773	933.546994	0.31147	0.0001457	2.6574	0.0012431	2.9689	0.0013888	467.78122513233086	39.763	0.95333	39.763	39.562	40.516	0					37	26	3	0	0	0	0.027866	1	3437	3437		52.299	21.796	1	448880			927	9860	663	663	946	946					0.07756213647348886
AIFKKCKP	8	Unmodified	_AIFKKCKP_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	467.780773	933.546994	-0.76794	-0.00035923	4.3014	0.0020121	3.5335	0.0016529	467.78228904344166	39.817	0.57668	39.704	39.363	39.94	-0.11223	-0.13187	8.6197E-05	NaN	25.45	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392240			928	9860	663	663							0.07756213647348886
AIFKKCKP	8	Unmodified	_AIFKKCKP_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	467.780773	933.546994	-0.10887	-5.0925E-05	4.4198	0.0020675	4.311	0.0020166	467.78265673110093	40.019	0.43478	40.042	39.84	40.275	0.023006	0.20544	0.00019697	NaN	25.45	26	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540180			929	9860	663	663							0.07756213647348886
AIFKLMIS	8	Unmodified	_AIFKLMIS_					0	0	0		ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7738952636719	2	461.775157	921.53576	-0.0097261	-4.4912E-06	-3.4769	-0.0016055	-3.4866	-0.00161	461.7734012798388	101.96	0.89851	101.97	101.65	102.55	0.0073471					40	20	3	0	0	0	0.93274	1	13003	13003		47.916	1.9636	1	969980			930	8228	664	664	947	947					0.0718539155320741
AIFLCIWAS	9	Unmodified	_AIFLCIWAS_					0	0	0			REV__ENST00000368039.2_1_1:160771962-160772262:+|nuORF	REV__ENST00000368039.2_1_1:160771962-160772262:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.26904296875	2	512.270238	1022.52592	0.51992	0.00026634	1.0072	0.00051598	1.5272	0.00078232	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	0.97516	1	13727	13727		25.45	1.2474	1	6752000	+		931	31043	665	665	948	948					0.01556203547829682
AIFQIIQSI	9	Unmodified	_AIFQIIQSI_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.8074340820312	2	516.808042	1031.60153	-0.20316	-0.000105	-0.63327	-0.00032728	-0.83644	-0.00043228	516.8078207779691	93.707	2.3466	93.707	93.345	95.691	0					146	55	5	0	0	0	0.013293	6	11931	11883;11894;11906;11918;11931;11943		221.33	60.426	1	18892000			932	3839	666	666	949;950;951;952;953;954	953					0.08699503999764602
AIFQIIQSI	9	Unmodified	_AIFQIIQSI_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.8047485351562	2	516.808042	1031.60153	-0.50744	-0.00026225	-0.31271	-0.00016161	-0.82015	-0.00042386	516.8080344903711	93.606	2.351	93.602	93.242	95.593	-0.0042038					124	55	5	0	0	0	0.013293	6	11902	11843;11853;11865;11877;11889;11902		221.33	63.252	1	16484000			933	3839	666	666	955;956;957;958;959;960	960					0.08699503999764602
AIFQIIQSI	9	Unmodified	_AIFQIIQSI_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.8080444335938	2	516.808042	1031.60153	-0.99502	-0.00051423	0.23819	0.0001231	-0.75682	-0.00039113	516.8082898128657	93.725	2.4346	93.731	93.265	95.7	0.0059814					137	57	6	0	0	0	0.014918	6	11857	11806;11818;11830;11845;11857;11869		221.33	38.308	1	14236000			934	3839	666	666	961;962;963;964;965;966	965					0.08699503999764602
AIFQKPLLS	9	Unmodified	_AIFQKPLLS_					0	0	0		ENST00000263694.8_1_1:31732485-31732845:-|nuORF	ENST00000263694.8_1_1:31732485-31732845:-|nuORF	ENST00000263694.8_1_1:31732485-31732845:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.277587890625	2	508.810585	1015.60662	-0.50937	-0.00025917	-3.3765	-0.001718	-3.8859	-0.0019772	508.80880730181286	35.653	0.35113	35.437	35.255	35.606	-0.21555					15	8	2	0	0	0	0.024487	1	2719	2719		17.365	3.9109	1	241580			935	11539	667	667	967	967					0.09943807862384801
AIGALLGLSL	10	Unmodified	_AIGALLGLSL_					0	0	0		ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2975769042969	2	464.29731	926.580068	-0.4742	-0.00022017	0.62675	0.000291	0.15255	7.0828E-05	464.297463744517	84.868	0.79057	84.796	84.507	85.298	-0.072777					45	18	3	0	0	0	1.0142	1	10606	10606		44.117	3.3386	1	1892600			936	6942	668	668	968	968					0.11384118971056978
AIGAPLFVGEG	11	Unmodified	_AIGAPLFVGEG_					0	0	0			REV__ENST00000555241.5_2_14:64663518-64663803:+|nuORF	REV__ENST00000555241.5_2_14:64663518-64663803:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.28564453125	2	515.782025	1029.5495	-0.73897	-0.00038115	0.96002	0.00049516	0.22105	0.00011401	516.2845750611958	50.53	1.3724	50.611	49.81	51.183	0.080994					69	22	5	0	0	0	0.90489	2	5239	5239;5252		51.335	6.9583	1	3680400	+		937	35005	669	669	969;970	969					0.035903405860153725
AIGASELINV	10	Unmodified	_AIGASELINV_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3088684082031	2	493.779482	985.544411	0.52657	0.00026001	-0.46239	-0.00022832	0.064181	3.1691E-05	493.7789694028995	67.844	0.76627	67.844	67.528	68.295	0					31	19	3	0	0	0	0.03519	1	8180	8180		34.173	5.023	1	193590	+		938	36627	670	670	971	971					0.05106036723384477
AIGDQTDYEEL	11	Unmodified	_AIGDQTDYEEL_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	418.5221862792969	3	418.522585	1252.54593	-0.66892	-0.00027996	-0.95301	-0.00039886	-1.6219	-0.00067882	418.5220738148119	39.369	0.86055	39.27	38.983	39.844	-0.098755					64	23	4	0	0	0	0.98082	1	3365	3365		41.08	4.7624	1	2705200	+		939	36747	671	671	972	972					-0.07024418769151453
AIGDVLGPSIN	11	Unmodified	_AIGDVLGPSIN_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3287353515625	2	528.290214	1054.56587	-0.28772	-0.000152	3.4016	0.001797	3.1139	0.001645	528.2919571501471	77.328	0.58991	77.117	76.995	77.585	-0.21087					20	13	2	0	0	0	0.024762	1	9558	9558		37.812	12.686	1	115050			940	231	672	672	973	973					0.04077421752117516
AIGENGIPLI	10	Unmodified	_AIGENGIPLI_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7885437011719	2	498.78985	995.565146	-0.5002	-0.00024949	-2.8547	-0.0014239	-3.3549	-0.0016734	498.7884542741766	21.56	1.003	21.56	21.195	22.198	0					59	20	4	0	0	0	0.88896	1	661	661		54.776	10.66	1	2404800			941	1114	673	673	974	974					0.06718627103043673
AIGERKQT	8	Unmodified	_AIGERKQT_					0	0	0		CENPJ|p.G884Efs*6|1|0.28|ENSG00000151849|chr13:24905387-24905387|C/-|frameshift_variant;nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ	CENPJ|p.G884Efs*6|1|0.28|ENSG00000151849|chr13:24905387-24905387|C/-|frameshift_variant	CENPJ|p.G884Efs*6|1|0.28|ENSG00000151849|chr13:24905387-24905387|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.74542236328125	2	451.756341	901.498129	0.51234	0.00023145	-2.1277	-0.00096121	-1.6154	-0.00072976	451.75525165716545	39.441	0.44529	39.441	39.288	39.733	0					18	12	2	0	0	0	0.027866	1	3383	3383		25.574	0	1	369160			942	251	674	674	975	975					0.043440166119466994
AIGGHLYPE	9	Unmodified	_AIGGHLYPE_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3003234863281	2	478.745442	955.476331	0.69565	0.00033304	0.044353	2.1234E-05	0.74	0.00035427	478.74516965441836	65.406	0.56772	65.406	65.192	65.76	0					23	15	2	0	0	0	0.024357	1	7778	7778		35.201	16.876	1	173260	+		943	20054	675	675	976	976					-0.003187881366329748
AIGGKGGELLK	11	Unmodified	_AIGGKGGELLK_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.816650390625	2	521.816399	1041.61824	-0.73699	-0.00038457	0.40981	0.00021384	-0.32718	-0.00017073	521.8165205606402	64.901	1.0417	64.667	64.295	65.337	-0.2345					65	25	4	0	0	0	0.93459	1	7421	7421		49.536	1.5765	1	4091600	+		944	22427	676	676	977	977					0.09910004885705348
AIGGSITVVAP	11	Unmodified	_AIGGSITVVAP_					0	0	0		ENSG00000135443|ENST00000257901|KRT85;CON__P78386	ENSG00000135443|ENST00000257901|KRT85	ENSG00000135443|ENST00000257901|KRT85	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7957763671875	2	492.78985	983.565146	-0.63406	-0.00031246	2.173	0.0010708	1.539	0.00075838	492.7902453276144	48.541	1.1178	48.608	48.043	49.161	0.066795					48	30	2	0	0	0	0.024802	1	4843	4843		40.778	0	1	595720		+	945	531	677	677	978	978					0.07270627103036986
AIGGSITVVAP	11	Unmodified	_AIGGSITVVAP_					0	0	0		ENSG00000135443|ENST00000257901|KRT85;CON__P78386	ENSG00000135443|ENST00000257901|KRT85	ENSG00000135443|ENST00000257901|KRT85	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.78985	983.565146	-1.2417	-0.00061192	3.1595	0.001557	1.9178	0.00094506	492.79136604500763	48.932	0.1904	48.831	48.689	48.88	-0.1008	0.12138	0.0014126	NaN	49.442	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241930		+	946	531	677	677							0.07270627103036986
AIGIFVSATY	10	Unmodified	_AIGIFVSATY_					0	0	0			REV__nc|ENSG00000092931|O43934-2|MFSD11	REV__nc|ENSG00000092931|O43934-2|MFSD11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2799072265625	2	521.2844	1040.55425	0.12901	6.7253E-05	-3.3207	-0.001731	-3.1917	-0.0016638	521.2826237139075	22.154	1.1721	21.965	21.434	22.606	-0.18894					61	24	5	0	0	0	1.0665	1	751	751		37.159	3.6435	1	990180	+		947	20942	678	678	979	979					0.0355922472876955
AIGIPRLT	8	Unmodified	_AIGIPRLT_					0	0	0			REV__ENST00000358794.9_1_11:63953243-63953438:+|nuORF	REV__ENST00000358794.9_1_11:63953243-63953438:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.74371337890625	2	420.76872	839.522887	-0.46956	-0.00019758	-1.2173	-0.00051222	-1.6869	-0.0007098	420.76808803216176	27.609	0.10884	27.609	27.544	27.653	0					4	2	2	0	0	0	0.027866	1	1531	1531		7.1934	0	1	14297	+		948	30868	679	679	980	980					0.09670696485306962
AIGIPTKLLP	10	Unmodified	_AIGIPTKLLP_					0	0	0		ENSG00000075399|ENST00000389386|VPS9D1;nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	ENSG00000075399|ENST00000389386|VPS9D1	ENSG00000075399|ENST00000389386|VPS9D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.833984375	2	511.83406	1021.65357	-0.38496	-0.00019703	0.05633	2.8832E-05	-0.32863	-0.0001682	511.83400772983464	72.755	1.1047	72.755	72.333	73.438	0					104	27	6	0	0	0	0.77808	1	8889	8889		62.107	1.9892	1	4575600			949	1556	680	680	981	981					0.14360667413507144
AIGIRELL	8	Unmodified	_AIGIRELL_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.73968505859375	2	442.781828	883.549102	-0.66036	-0.0002924	1.1835	0.00052402	0.52312	0.00023163	442.78208827418166	25.449	0.40396	25.449	25.248	25.652	0					14	9	2	0	0	0	0.027866	1	1220	1220		15.636	0	1	44576	+		950	23025	681	681	982	982					0.10266965656808225
AIGKKKLAI	9	Unmodified	_AIGKKKLAI_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.3291320800781	2	471.328945	940.643337	2.3945	0.0011286	-2.2007	-0.0010373	0.19376	9.1324E-05	471.3277123113455	18.742	0.7461	18.499	18.074	18.82	-0.24256					28	14	4	0	0	0	0.67308	1	322	322		47.916	9.1095	1	198810	+		951	22019	682	682	983	983					0.17064104478913578
AIGKKKLAI	9	Unmodified	_AIGKKKLAI_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	471.328945	940.643337	0.50681	0.00023888	-0.39347	-0.00018545	0.11334	5.3421E-05	471.3285976223392	18.785	0.74334	18.581	18.064	18.807	-0.20371	0.032195	0.00057709	NaN	47.916	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213530	+		952	22019	682	682							0.17064104478913578
AIGKRLFI	8	Unmodified	_AIGKRLFI_					0	0	0			REV__ENSG00000105507|ENST00000293255|CABP5	REV__ENSG00000105507|ENST00000293255|CABP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.266845703125	2	459.300188	916.585822	-1.1838	-0.00054374	-0.87095	-0.00040003	-2.0548	-0.00094376	459.2995387912567	48.514	0.31754	48.238	48.08	48.397	-0.27598					16	8	2	0	0	0	0.027866	1	4819	4819		26.796	14.589	1	271060	+		953	21532	683	683	984	984					0.12419262273363074
AIGLCYLL	8	Unmodified	_AIGLCYLL_					0	0	0		ENSG00000132671|ENST00000255008|SSTR4	ENSG00000132671|ENST00000255008|SSTR4	ENSG00000132671|ENST00000255008|SSTR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.58380126953125	2	433.246232	864.477911	0.092439	4.0049E-05	-2.4657	-0.0010683	-2.3733	-0.0010282	433.2442810266162	47.1	0.52067	47.003	46.719	47.239	-0.096653					21	13	2	0	0	0	0.027866	1	4565	4565		33.493	8.989	1	114910			954	4637	684	684	985	985					0.040251296277801885
AIGLDSCPEP	10	Unmodified	_AIGLDSCPEP_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.77264404296875	2	501.23405	1000.45355	-1.1201	-0.00056145	-1.1265	-0.00056466	-2.2467	-0.0011261	501.2331819291617	55.624	0.26017	55.408	55.268	55.528	-0.21551					8	6	2	0	0	0	0.03519	1	5983	5983		15.642	0	1	55916			955	593	685	685	986	986					-0.04666175316413046
AIGLGKVSSV	10	Unmodified	_AIGLGKVSSV_					0	0	0			REV__ENSG00000163293|ENST00000295461|NIPAL1	REV__ENSG00000163293|ENST00000295461|NIPAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.76715087890625	2	465.784567	929.554582	0.32682	0.00015223	-0.40138	-0.00018696	-0.074562	-3.473E-05	465.78440928852694	33.908	0.48761	33.965	33.732	34.22	0.056572					17	11	2	0	0	0	0.03519	1	2420	2420		24.203	3.7209	1	62297	+		956	25552	686	686	987	987					0.08698644448611503
AIGLPLRGLS	10	Unmodified	_AIGLPLRGLS_					0	0	0			REV__ENSG00000171735|ENST00000303635|CAMTA1	REV__ENSG00000171735|ENST00000303635|CAMTA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7666931152344	2	498.813659	995.612765	0.36616	0.00018264	-0.41178	-0.0002054	-0.04562	-2.2756E-05	498.8127133931279	41.453	0.46462	41.453	41.258	41.722	0					16	12	2	0	0	0	0.03519	1	3777	3777		30.504	0	1	64706	+		957	26596	687	687	988	988					0.11478326093913438
AIGLSIALHV	10	Unmodified	_AIGLSIALHV_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;ENST00000586392.1_1_19:34884173-34884275:+|nuORF;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7875671386719	2	497.30821	992.601866	0.13856	6.8909E-05	0.00040935	2.0357E-07	0.13897	6.9112E-05	497.3075884615193	57.254	0.18056	57.09	56.941	57.122	-0.16431					6	4	2	0	0	0	0.03519	1	6377	6377		12.207	0	1	38180		+	958	17687;2646	688	688	989	989					0.10526923719612569
AIGLSVADLI	10	Unmodified	_AIGLSVADLI_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000542765.4_1_12:21788478-21790169:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2919006347656	2	486.292225	970.569897	0.86071	0.00041855	-1.6345	-0.00079486	-0.77382	-0.0003763	486.29141327896167	59.829	1.5878	59.829	59.257	60.845	0					113	42	5	0	0	0	0.79525	1	6883	6883		60.972	7.6205	1	28486000			959	3141	689	689	990	990					0.08343511245811897
AIGLTSLLVV	10	Unmodified	_AIGLTSLLVV_					0	0	0			REV__ENST00000537345.5_1_1:116931545-116932105:+|nuORF	REV__ENST00000537345.5_1_1:116931545-116932105:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.27117919921875	2	493.318243	984.621933	-0.87312	-0.00043072	0.6414	0.00031642	-0.23171	-0.00011431	493.31845708835255	64.901	0.47755	64.667	64.452	64.93	-0.2345					20	11	2	0	0	0	0.03519	1	7360	7360		45.952	0	1	231370	+		960	34698	690	690	991	991					0.12900674659567812
AIGMMDRWHM	10	Unmodified	_AIGMMDRWHM_					0	0	0			REV__DNAJC13|p.R729M|1|0.06|ENSG00000138246|chr3:132467291-132467291|G/T|missense_variant	REV__DNAJC13|p.R729M|1|0.06|ENSG00000138246|chr3:132467291-132467291|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.5576477050781	3	416.520923	1246.54094	-0.89555	-0.00037302	1.7107	0.00071253	0.81511	0.00033951	416.5215039581309	24.557	0.49388	24.51	24.264	24.758	-0.047148					11	10	2	0	0	0	0.03519	1	1066	1066		28.081	21.761	1	24145	+		961	19694	691	691	992	992					-0.07246995918126231
AIGPKRVKHYW	11	Unmodified	_AIGPKRVKHYW_					0	0	0			REV__ENSG00000115841|ENST00000354545|RMDN2	REV__ENSG00000115841|ENST00000354545|RMDN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.7774963378906	3	452.262935	1353.76697	0.66632	0.00030135	-4.3384	-0.0019621	-3.6721	-0.0016608	452.2609353012685	40.991	0.60499	40.868	40.584	41.189	-0.12318					28	16	3	0	0	0	0.024772	1	3670	3670		10.104	0	1	377250	+		962	22236	692	692	993	993					0.1042415557926688
AIGQNESL	8	Unmodified	_AIGQNESL_					0	0	0			REV__nc|ENSG00000137038|Q96GE9|DMAC1	REV__nc|ENSG00000137038|Q96GE9|DMAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2483825683594	2	416.213975	830.413397	-0.32756	-0.00013633	1.6652	0.0006931	1.3377	0.00055676	416.21470841504396	35.501	0.70161	35.545	35.267	35.968	0.04406					31	17	2	0	0	0	0.027866	1	2705	2705		23.042	4.7181	1	317390	+		963	36697	693	693	994	994					-0.008593539246589899
AIGQQVIAI	9	Unmodified	_AIGQQVIAI_					0	0	0		ENST00000551203.1_1_2:74348452-74348623:+|nuORF	ENST00000551203.1_1_2:74348452-74348623:+|nuORF	ENST00000551203.1_1_2:74348452-74348623:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.78076171875	2	456.779285	911.544017	0.61264	0.00027984	-1.0743	-0.00049071	-0.46163	-0.00021086	456.7785612235513	49.073	0.56222	49.073	48.724	49.287	0					42	15	4	0	0	0	0.18276	1	5072	5072		92.191	6.8311	1	3948100			964	16596	694	694	995	995					0.08470661794160605
AIGQRPLL	8	Unmodified	_AIGQRPLL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.27410888671875	2	434.27417	866.533787	-0.082088	-3.5649E-05	-0.083591	-3.6301E-05	-0.16568	-7.195E-05	434.2741812069314	54.74	1.7488	54.74	54.144	55.892	0					91	49	4	0	0	0	0.63936	1	6011	6011		72.62	1.242	1	5723100			965	6477	695	695	996	996					0.09518098859598467
AIGQRPLL	8	Unmodified	_AIGQRPLL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.27423095703125	2	434.27417	866.533787	0.033951	1.4744E-05	-0.28395	-0.00012331	-0.25	-0.00010857	434.2741282288934	54.867	1.1805	54.717	54.156	55.336	-0.15036					72	33	4	0	0	0	0.54157	1	5997	5997		81.716	3.7722	1	5591800			966	6477	695	695	997	997					0.09518098859598467
AIGQRPLL	8	Unmodified	_AIGQRPLL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2743835449219	2	434.27417	866.533787	0.58584	0.00025442	-0.64496	-0.00028009	-0.059116	-2.5673E-05	434.27393026118796	54.587	1.2173	54.685	54.077	55.294	0.098015					71	34	4	0	0	0	0.78474	1	5899	5899		60.404	2.951	1	5314200			967	6477	695	695	998	998					0.09518098859598467
AIGRTLIP	8	Unmodified	_AIGRTLIP_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.2409973144531	2	420.76872	839.522887	0.26002	0.00010941	-0.35359	-0.00014878	-0.093569	-3.9371E-05	420.7684845269433	23.736	0.68787	23.534	23.279	23.967	-0.20193					23	15	2	0	0	0	0.027866	1	1020	1020		9.4706	0	1	103080			968	15798	696	696	999	999					0.096706964853297
AIGVRLFF	8	Unmodified	_AIGVRLFF_					0	0	0		ENST00000444228.2_1_16:31405642-31419232:+|nuORF	ENST00000444228.2_1_16:31405642-31419232:+|nuORF	ENST00000444228.2_1_16:31405642-31419232:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7709045410156	2	461.779088	921.543623	-0.3843	-0.00017746	3.9056	0.0018035	3.5213	0.0016261	461.7817193457737	23.8	0.12775	23.8	23.694	23.822	0					4	2	2	0	0	0	0.027866	1	968	968		37.028	24.069	1	14583			969	14414	697	697	1000	1000					0.07971286864994909
AIGVRVASR	9	Unmodified	_AIGVRVASR_					0	0	0			REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.77545166015625	2	464.787976	927.561398	0.89718	0.000417	1.7179	0.00079848	2.6151	0.0012155	464.78836373142894	51.173	0.30975	51.061	50.859	51.169	-0.11163					11	7	2	0	0	0	0.024427	1	5243	5243		26.693	0	1	85511	+		970	20351	698	698	1001	1001					0.09472002119844092
AIGVSHPLSI	10	Unmodified	_AIGVSHPLSI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7178955078125	2	497.290017	992.565481	-0.62354	-0.00031008	-3.0425	-0.001513	-3.666	-0.0018231	497.28821920072636	27.575	0.36949	27.656	27.463	27.833	0.081293					19	9	3	0	0	0	0.03519	1	1488	1488		35.618	0	1	244500			971	7879	699	699	1002	1002					0.06890046822900331
AIGWEWPWVYF	11	Unmodified	_AIGWEWPWVYF_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2370300292969	3	485.236163	1452.68666	-0.43008	-0.00020869	1.6797	0.00081506	1.2496	0.00060637	485.2371003367665	35.446	0.79274	35.234	34.924	35.717	-0.21246					64	20	4	0	0	0	0.96309	1	2706	2706		45.022	1.3714	1	2189100			972	18408	700	700	1003	1003					-0.021577505344566816
AIHAYKETW	9	Unmodified	_AIHAYKETW_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.78271484375	2	559.785099	1117.55564	-0.47764	-0.00026738	-3.7572	-0.0021032	-4.2349	-0.0023706	559.7829991172084	31.054	1.0835	30.813	30.248	31.332	-0.24109					89	26	4	0	0	0	0.22754	3	2038	2026;2038;2052		85.359	11.043	1	7647000			973	5209	701	701	1004;1005;1006	1005					0.0015685881751323905
AIHAYKETW	9	Unmodified	_AIHAYKETW_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.7831420898438	2	559.785099	1117.55564	-0.51084	-0.00028596	-3.6347	-0.0020347	-4.1455	-0.0023206	559.783063625684	30.925	1.2074	30.747	30.083	31.29	-0.17818					81	29	4	0	0	0	0.22754	3	2013	2001;2013;2025		85.359	11.385	1	7513400			974	5209	701	701	1007;1008;1009	1008					0.0015685881751323905
AIHAYKETW	9	Unmodified	_AIHAYKETW_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.7827758789062	2	559.785099	1117.55564	-0.3807	-0.00021311	-3.7479	-0.002098	-4.1286	-0.0023111	559.783001165191	30.938	1.038	30.786	30.341	31.379	-0.15231					82	25	4	0	0	0	0.22754	1	1989	1989		85.359	8.5128	1	9476600			975	5209	701	701	1010	1010					0.0015685881751323905
AIHLLSTK	8	Unmodified	_AIHLLSTK_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.23101806640625	2	441.774003	881.533452	-0.33831	-0.00014946	0.034569	1.5272E-05	-0.30374	-0.00013418	441.7740091001827	47.199	0.49026	47.103	46.825	47.315	-0.096649					21	12	2	0	0	0	0.027866	1	4610	4610		23.042	2.0956	1	134070	+		976	23729	702	702	1011	1011					0.08794679139759864
AIHTGLEADE	10	Unmodified	_AIHTGLEADE_					0	0	0			REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2734375	2	528.253828	1054.4931	0.40392	0.00021337	-0.65688	-0.000347	-0.25296	-0.00013363	528.2535815234054	92.046	0.55476	92.056	91.788	92.343	0.0094147					31	13	3	0	0	0	0.03519	1	11633	11633		99.375	14.459	1	360520	+		977	29049	703	703	1012	1012					-0.03196332041329697
AIIAHGNSSI	10	Unmodified	_AIIAHGNSSI_					0	0	0		ENST00000413059.1_1_X:57419910-57420861:-|nuORF	ENST00000413059.1_1_X:57419910-57420861:-|nuORF	ENST00000413059.1_1_X:57419910-57420861:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.76953125	2	491.769448	981.524344	-0.46802	-0.00023016	0.42013	0.0002066	-0.047893	-2.3552E-05	491.7694520645701	27.983	0.7664	27.979	27.692	28.458	-0.0042019					49	18	4	0	0	0	0.57594	1	1568	1568		79.713	2.866	1	1902200			978	13835	704	704	1013	1013					0.03284285783422547
AIILDVVST	9	Unmodified	_AIILDVVST_					0	0	0			REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2	REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7790832519531	2	465.778951	929.543348	-1.1078	-0.00051601	1.0819	0.00050391	-0.02597	-1.2097E-05	465.7793497654637	91.618	1.0736	91.618	91.299	92.372	0					61	25	4	0	0	0	0.40179	1	11632	11632		65.803	9.0821	1	2506800	+		979	28762	705	705	1014	1014					0.07575822354476713
AIILKEKGG	9	Unmodified	_AIILKEKGG_					0	0	0		ENSG00000141665|ENST00000419743|FBXO15;nc|ENSG00000141665|Q8NCQ5-2|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7586669921875	2	464.794935	927.575317	-0.30712	-0.00014275	-1.1117	-0.00051671	-1.4188	-0.00065945	464.79430084545174	53.806	0.50145	53.659	53.42	53.921	-0.14723					23	13	2	0	0	0	0.024477	1	5776	5776		44.117	0	1	568150			980	5516	706	706	1015	1015					0.1086323482828675
AIILKEKGG	9	Unmodified	_AIILKEKGG_					0	0	0		ENSG00000141665|ENST00000419743|FBXO15;nc|ENSG00000141665|Q8NCQ5-2|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.794935	927.575317	-0.070893	-3.2951E-05	-1.2649	-0.00058794	-1.3358	-0.00062089	464.79417235243756	53.743	0.60201	53.743	53.474	54.076	0	0.058668	-4.0118E-05	NaN	49.442	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459810			981	5516	706	706							0.1086323482828675
AIILKEKGG	9	Unmodified	_AIILKEKGG_					0	0	0		ENSG00000141665|ENST00000419743|FBXO15;nc|ENSG00000141665|Q8NCQ5-2|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.794935	927.575317	0.16136	7.4998E-05	-1.3353	-0.00062066	-1.174	-0.00054567	464.7941357447038	53.555	0.49818	53.651	53.407	53.905	0.095669	-0.033218	-0.00010557	NaN	49.442	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503660			982	5516	706	706							0.1086323482828675
AIILLMLEKVH	11	Unmodified	_AIILLMLEKVH_					0	0	0			REV__nc|ENSG00000272987|P0C617|OR5AL1	REV__nc|ENSG00000272987|P0C617|OR5AL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2644348144531	3	427.265065	1278.77336	-0.45996	-0.00019653	-1.0598	-0.00045283	-1.5198	-0.00064936	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0371	1	5953	5953		28.577	4.3449	1	57851000	+		983	37199	707	707	1016	1016					0.14512912695749947
AIILRPRF	8	Unmodified	_AIILRPRF_					0	0	0			REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.27142333984375	2	493.318912	984.62327	-0.45841	-0.00022614	-1.3423	-0.00066217	-1.8007	-0.00088831	493.3181891347849	64.897	0.43416	64.641	64.426	64.86	-0.25563					16	10	2	0	0	0	0.027866	1	7363	7363		37.028	0	1	184100	+		984	27457	708	708	1017	1017					0.13034353538989762
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.786865234375	2	472.786776	943.558998	0.87878	0.00041547	-0.8357	-0.00039511	0.043079	2.0367E-05	472.7862026446998	87.34	1.4446	87.34	86.517	87.962	0					67	34	4	0	0	0	0.015769	2	10982	10982;10996		157.99	24.52	1	2121400			985	695	709	709	1018;1019	1018					0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.78704833984375	2	472.786776	943.558998	0.74646	0.00035292	-0.61039	-0.00028858	0.13608	6.4335E-05	472.78633429082	87.336	0.94516	87.301	86.899	87.844	-0.035355					58	22	4	0	0	0	0.049585	2	10948	10948;10961		128.86	22.446	1	2008300			986	695	709	709	1020;1021	1020					0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7870788574219	2	472.786776	943.558998	1.2694	0.00060017	-1.1888	-0.00056204	0.080666	3.8138E-05	472.78605492943825	87.346	1.0635	87.367	86.927	87.991	0.021263					61	25	4	0	0	0	0.016838	4	10903	10892;10903;10916;10926		152.63	33.818	1	2126800			987	695	709	709	1022;1023;1024;1025	1023					0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.786776	943.558998	0.14561	6.8844E-05	-0.7758	-0.00036679	-0.63019	-0.00029795	472.78615932301165	87.395	1.2234	87.216	86.393	87.616	-0.17875	-0.037121	8.3487E-05	NaN	157.99	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473460			988	695	709	709							0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.786776	943.558998	0.63468	0.00030007	-1.1979	-0.00056636	-0.56324	-0.00026629	472.7860631624502	87.28	1.1764	87.144	86.544	87.721	-0.13613	-0.10952	-0.00031566	NaN	157.99	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539710			989	695	709	709							0.08496108871520391
AIISELVSI	9	Unmodified	_AIISELVSI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.786776	943.558998	-0.14664	-6.9331E-05	-0.27635	-0.00013065	-0.42299	-0.00019999	472.7864866117816	87.291	1.2592	87.153	86.487	87.746	-0.13734	-0.10009	0.00055576	NaN	157.99	66	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	574040			990	695	709	709							0.08496108871520391
AIISKLVAL	9	Unmodified	_AIISKLVAL_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2427673339844	2	464.315503	926.616454	0.020238	9.3967E-06	-0.053164	-2.4685E-05	-0.032926	-1.5288E-05	464.31529105381856	68.022	0.80519	68.022	67.755	68.56	0					40	20	3	0	0	0	0.024209	1	8143	8143		76.774	16.48	1	972510			991	3416	710	710	1026	1026					0.15020995867757847
AIISKLVAL	9	Unmodified	_AIISKLVAL_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2430114746094	2	464.315503	926.616454	0.23601	0.00010958	-0.1997	-9.2723E-05	0.036314	1.6861E-05	464.3152787561758	68.365	1.2318	68.072	67.819	69.051	-0.29267					60	31	3	0	0	0	0.021513	1	8162	8162		104.75	22.442	1	1120200			992	3416	710	710	1027	1027					0.15020995867757847
AIISKLVAL	9	Unmodified	_AIISKLVAL_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2427062988281	2	464.315503	926.616454	0.97807	0.00045413	-1.0155	-0.0004715	-0.037395	-1.7363E-05	464.31490707137857	68.152	0.53291	68.17	67.93	68.462	0.018913					36	13	3	0	0	0	0.024288	1	8071	8071		62.107	16.135	1	1101700			993	3416	710	710	1028	1028					0.15020995867757847
AIISKLVAL	9	Unmodified	_AIISKLVAL_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.315503	926.616454	0.24126	0.00011202	-0.27319	-0.00012685	-0.031927	-1.4824E-05	464.3152620330887	68.325	0.486	68.066	67.859	68.345	-0.25846	0.0039932	5.0147E-05	NaN	104.75	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240280			994	3416	710	710							0.15020995867757847
AIISKLVAL	9	Unmodified	_AIISKLVAL_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.315503	926.616454	0.43519	0.00020207	-0.14441	-6.705E-05	0.29078	0.00013502	464.3153319224303	68.27	0.39902	68.036	67.837	68.236	-0.23376	-0.026052	0.00016974	NaN	104.75	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211620			995	3416	710	710							0.15020995867757847
AIISKLVAL	9	Unmodified	_AIISKLVAL_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;TANC1|p.N1382Kfs*2|1|0.31|ENSG00000115183|chr2:159228887-159228888|-/A|frameshift_variant	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.315503	926.616454	0.32137	0.00014922	-0.34223	-0.0001589	-0.020861	-9.686E-06	464.31523943361384	68.236	0.44011	68.006	67.794	68.234	-0.23048	-0.056458	-1.3962E-05	NaN	104.75	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216000			996	3416	710	710							0.15020995867757847
AIIVVWHS	8	Unmodified	_AIIVVWHS_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|47|3|sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|47|3|sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|47|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7847900390625	2	462.76872	923.522887	-0.87351	-0.00040423	-2.0799	-0.0009625	-2.9534	-0.0013667	462.7677754769648	43.594	0.17339	43.374	43.246	43.42	-0.21939					5	4	2	0	0	0	0.027866	1	3988	3988		69.093	43.519	1	160680			997	17905	711	711	1029	1029					0.05806696485319662
AIKAELHLL	9	Unmodified	_AIKAELHLL_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.35223388671875	2	504.316035	1006.61752	0.039668	2.0005E-05	-0.29285	-0.00014769	-0.25318	-0.00012768	504.31488511937556	82.376	0.94548	82.195	81.647	82.592	-0.18079					42	21	3	0	0	0	0.024477	1	9919	9919		35.618	0	1	250850			998	8744	712	712	1030	1030					0.11447210236656247
AIKDRLFL	8	Unmodified	_AIKDRLFL_					0	0	0			REV__ENSG00000106009|ENST00000340611|BRAT1	REV__ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2848205566406	2	488.302927	974.591301	-0.18972	-9.264E-05	0.37197	0.00018164	0.18225	8.8995E-05	488.30265258792633	55.249	0.44378	55.098	54.929	55.373	-0.15036					21	12	2	0	0	0	0.027866	1	6067	6067		71.296	0	1	200690	+		999	21588	713	713	1031	1031					0.10298941065184408
AIKFADQAL	9	Unmodified	_AIKFADQAL_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6;REV__PIK3R3-ZSWIM5|1|fusion	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7797546386719	2	488.776742	975.538931	-0.3484	-0.00017029	-0.19859	-9.7067E-05	-0.54699	-0.00026736	488.7766396982319	55.545	1.0297	55.33	54.931	55.961	-0.21551					85	28	6	0	0	0	0.16468	1	5953	5953		96.19	5.4138	1	3921500	+		1000	23114;25437	714	714	1032	1032					0.05018357931567152
AIKFILPK	8	Unmodified	_AIKFILPK_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.312764	928.610974	-0.27036	-0.0001258	3.9973	0.00186	3.7269	0.0017342	465.3147098227834	75.528	0.22586	75.284	75.077	75.303	-0.24455					7	5	2	0	0	0	0.027866	1	9209	9209		19.36	0	1	103830			1001	6319	715	715	1033	1033					0.1438131707594721
AIKFVLSGAN	10	Unmodified	_AIKFVLSGAN_					0	0	0		ENST00000487133.1_1_X:119739298-119742228:+|nuORF;ENSG00000232119|ENST00000371317|MCTS1;ENSG00000101898|ENST00000394552|MCTS2;nc|ENSG00000232119|Q9ULC4-3|MCTS1;nc|ENSG00000232119|Q9ULC4-2|MCTS1	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3209228515625	2	510.297842	1018.58113	0.30106	0.00015363	-0.65883	-0.0003362	-0.35777	-0.00018257	510.297030627587	69.251	0.63383	68.958	68.753	69.386	-0.29292					27	16	3	0	0	0	0.03519	1	8361	8361		34.173	5.023	1	645990			1002	2358	716	716	1034	1034					0.07258333339950696
AIKKKDEL	8	Unmodified	_AIKKKDEL_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.79193115234375	2	472.792392	943.570232	1.0065	0.00047585	-1.2028	-0.00056868	-0.19635	-9.2832E-05	472.7918087186321	18.478	0.88958	18.321	18.099	18.989	-0.15637					43	17	5	0	0	0	0.34573	1	310	310		104.75	5.3716	1	2282300			1003	1761	717	717	1035	1035					0.0961893096566655
AIKNRYSD	8	Unmodified	_AIKNRYSD_					0	0	0			REV__TTK|p.E571K|1|0.05|ENSG00000112742|chr6:80035081-80035081|G/A|missense_variant	REV__TTK|p.E571K|1|0.05|ENSG00000112742|chr6:80035081-80035081|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2704162597656	2	483.753798	965.493044	-0.28279	-0.0001368	-0.0042461	-2.054E-06	-0.28703	-0.00013885	483.75371111972873	32.694	2.1009	32.757	31.521	33.622	0.062889					104	54	4	0	0	0	0.027866	1	2114	2114		24.203	0	1	584370	+		1004	37742	718	718	1036	1036					0.008917127493305088
AIKQEVASSL	10	Unmodified	_AIKQEVASSL_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2781982421875	2	523.298039	1044.58152	-1.3467	-0.00070473	2.2828	0.0011946	0.93605	0.00048983	523.2992009540355	38.037	0.17461	38.064	37.987	38.162	0.027279					5	4	2	0	0	0	0.03519	1	3102	3102		101.25	31.625	1	83352	+		1005	21324	719	719	1037	1037					0.06101708269147821
AIKTQRPK	8	Unmodified	_AIKTQRPK_					0	0	0		ENSG00000204086|ENST00000373040|RPA4	ENSG00000204086|ENST00000373040|RPA4	ENSG00000204086|ENST00000373040|RPA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.2979431152344	2	471.298176	940.581799	0.00063679	3.0012E-07	-0.0061548	-2.9008E-06	-0.0055181	-2.6006E-06	471.29805361319694	32.925	1.1313	32.694	32.423	33.554	-0.23107					47	27	4	0	0	0	1.043	1	2317	2317		30.504	0.6621	1	1502100			1006	10298	720	720	1038	1038					0.10913172779657998
AILAHLPKI	9	Unmodified	_AILAHLPKI_					0	0	0		ENST00000520622.5_1_13:45944167-45951213:+|nuORF	ENST00000520622.5_1_13:45944167-45951213:+|nuORF	ENST00000520622.5_1_13:45944167-45951213:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2843322753906	2	488.32112	974.627687	0.61603	0.00030082	-0.16778	-8.1931E-05	0.44824	0.00021889	488.3202136287106	55.284	0.13677	55.284	55.216	55.353	0					5	3	2	0	0	0	0.024183	1	6091	6091		50.025	0	1	45089			1007	15988	721	721	1039	1039					0.13935817961885277
AILARIGH	8	Unmodified	_AILARIGH_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.23870849609375	2	425.766512	849.518471	-0.1301	-5.5391E-05	0.28836	0.00012277	0.15827	6.7384E-05	425.7664883990651	22.004	0.57971	21.802	21.517	22.097	-0.20198					29	11	4	0	0	0	0.027866	1	702	702		33.516	6.7195	1	370400	+		1008	24742	722	722	1040	1040					0.08769232062434185
AILCCSMQD	9	Unmodified	_AILCCSMQD_					0	0	0		nc|ENSG00000165186|Q96NR3-3|PTCHD1;nc|ENSG00000165186|Q96NR3-2|PTCHD1;ENSG00000165186|ENST00000379361|PTCHD1	nc|ENSG00000165186|Q96NR3-3|PTCHD1	nc|ENSG00000165186|Q96NR3-3|PTCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.2015686035156	2	492.203381	982.392209	-0.52263	-0.00025724	-4.042	-0.0019895	-4.5646	-0.0022467	492.2013630539553	42.129	0.92381	42.006	41.68	42.604	-0.12299					79	24	5	0	0	0	0.20304	1	3790	3790		88.643	17.265	1	8189000			1009	7376	723	723	1041	1041					-0.09969146611695123
AILDISKTI	9	Unmodified	_AILDISKTI_					0	0	0		ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.30047607421875	2	487.30005	972.585547	0.69092	0.00033669	-0.26519	-0.00012923	0.42573	0.00020746	487.29974958494626	58.379	0.85756	58.138	57.918	58.776	-0.24165					42	20	3	0	0	0	0.22754	1	6395	6395		85.359	0.19866	1	1758000			1010	9872	724	724	1042	1042					0.09815797762871625
AILEKVFIS	9	Unmodified	_AILEKVFIS_					0	0	0		ENSG00000139624|ENST00000317551|CERS5;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENST00000551005.5_1_12:50537518-50537860:-|nuORF	ENSG00000139624|ENST00000317551|CERS5	ENSG00000139624|ENST00000317551|CERS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.3109436035156	2	510.310418	1018.60628	0.55732	0.00028441	-0.67378	-0.00034384	-0.11646	-5.943E-05	510.31003056049474	77.214	2.3135	76.971	76.537	78.85	-0.24232					164	55	5	0	0	0	0.16468	1	9250	9250		96.19	0.37527	1	48176000			1011	5348	725	725	1043	1043					0.09772388142516775
AILEKVFTA	9	Unmodified	_AILEKVFTA_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2955017089844	2	496.294768	990.574983	0.58606	0.00029086	-1.2343	-0.00061256	-0.64821	-0.0003217	496.29399369116976	61.258	0.94715	61.258	60.958	61.906	0					69	24	4	0	0	0	0.094442	1	7072	7072		112.41	35.637	1	6241200			1012	8260	726	726	1044	1044					0.07931815108429419
AILELSALVT	10	Unmodified	_AILELSALVT_					0	0	0		nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF	nc|ENSG00000186529|Q08477-2|CYP4F3	nc|ENSG00000186529|Q08477-2|CYP4F3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8046264648438	2	515.313158	1028.61176	-0.37872	-0.00019516	4.0651	0.0020948	3.6863	0.0018996	515.3139044714336	58.196	0.73438	58.287	58.084	58.819	0.091217					34	19	3	0	0	0	0.03519	1	6496	6496		87.754	10.98	1	1169400			1013	9559	727	727	1045	1045					0.098600669343341
AILFSFSF	8	Unmodified	_AILFSFSF_					0	0	0			REV__nc|ENSG00000221932|Q6WQI6|HEPN1	REV__nc|ENSG00000221932|Q6WQI6|HEPN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2686462402344	2	466.249829	930.485105	-0.28802	-0.00013429	4.4398	0.0020701	4.1518	0.0019358	466.2514136098678	38.999	0.39788	39.023	38.844	39.242	0.023727					17	10	2	0	0	0	0.027866	1	3235	3235		37.028	11.578	1	351660	+		1014	37134	728	728	1046	1046					0.017081854998536983
AILFSFSF	8	Unmodified	_AILFSFSF_					0	0	0			REV__nc|ENSG00000221932|Q6WQI6|HEPN1	REV__nc|ENSG00000221932|Q6WQI6|HEPN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.249829	930.485105	-1.0243	-0.00047759	6.011	0.0028026	4.9867	0.002325	466.25165376115	38.927	0.83131	38.762	38.285	39.116	-0.16458	-0.069585	0.00059697	NaN	37.028	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	841780	+		1015	37134	728	728							0.017081854998536983
AILFSFSF	8	Unmodified	_AILFSFSF_					0	0	0			REV__nc|ENSG00000221932|Q6WQI6|HEPN1	REV__nc|ENSG00000221932|Q6WQI6|HEPN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.249829	930.485105	-0.53703	-0.00025039	5.4816	0.0025558	4.9446	0.0023054	466.2514150928497	39.055	0.49552	38.832	38.616	39.111	-0.22311	1.2102E-05	0.00010332	NaN	37.028	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362100	+		1016	37134	728	728							0.017081854998536983
AILFSFSF	8	Unmodified	_AILFSFSF_					0	0	0			REV__nc|ENSG00000221932|Q6WQI6|HEPN1	REV__nc|ENSG00000221932|Q6WQI6|HEPN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.249829	930.485105	-0.23076	-0.00010759	4.8467	0.0022598	4.6159	0.0021522	466.2512580842206	39.019	0.49615	38.793	38.6	39.096	-0.2257	-0.038445	-0.00048878	NaN	37.028	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532490	+		1017	37134	728	728							0.017081854998536983
AILFVHLL	8	Unmodified	_AILFVHLL_					0	0	0		ENSG00000149596|ENST00000372980|JPH2;JPH2|p.G686D|1|0.17|ENSG00000149596|chr20:44114830-44114830|C/T|missense_variant	ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2332763671875	2	463.297114	924.579674	-0.080071	-3.7097E-05	-4.1087	-0.0019035	-4.1887	-0.0019406	463.295020553278	53.517	0.63982	53.517	53.267	53.907	0					27	17	3	0	0	0	0.027866	1	5849	5849		16.705	0	1	419390			1018	6107	729	729	1047	1047					0.1143674404183912
AILFYMNQP	9	Unmodified	_AILFYMNQP_					0	0	0			REV__ENST00000238156.7_1_12:124421304-124421517:-|nuORF	REV__ENST00000238156.7_1_12:124421304-124421517:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.7960815429688	2	548.778428	1095.5423	-0.46168	-0.00025336	-3.1805	-0.0017454	-3.6422	-0.0019988	548.7764212498148	53.793	0.81568	53.595	53.011	53.827	-0.19739					29	23	2	0	0	0	0.024517	1	5695	5695		12.959	1.4482	1	261770	+		1019	29439	730	730	1048	1048					-0.0016471528608690278
AILFYRIN	8	Unmodified	_AILFYRIN_					0	0	0		ENST00000424363.5_1_7:22534421-22534983:-|nuORF	ENST00000424363.5_1_7:22534421-22534983:-|nuORF	ENST00000424363.5_1_7:22534421-22534983:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3240051269531	2	505.295102	1008.57565	0.60762	0.00030703	0.79825	0.00040335	1.4059	0.00071038	505.79642074153605	65.776	0.15587	65.776	65.681	65.837	0					5	3	2	0	0	0	0.027866	1	7815	7815		26.796	6.3143	1	26737			1020	14041	731	731	1049	1049					0.0717065454813337
AILGSGLVGL	10	Unmodified	_AILGSGLVGL_					0	0	0			REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	REV__ENST00000265056.11_2_3:127340622-127340844:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2540588378906	2	450.28166	898.548768	0.26601	0.00011978	-0.072104	-3.2467E-05	0.19391	8.7312E-05	450.2814668899827	36.883	0.54426	36.82	36.508	37.052	-0.063385					17	13	2	0	0	0	0.03519	1	2921	2921		35.618	0	1	71998	+		1021	29731	732	732	1050	1050					0.09543545936958253
AILGYKVVE	9	Unmodified	_AILGYKVVE_					0	0	0		ENST00000582147.1_1_18:334691-500598:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:334691-500598:-|nuORF	ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25909423828125	2	496.294768	990.574983	-0.03621	-1.7971E-05	-3.6199	-0.0017966	-3.6561	-0.0018145	496.29290910312676	20.939	0.38507	20.762	20.533	20.918	-0.17721					12	7	2	0	0	0	0.024381	1	592	592		37.159	8.0096	1	42421			1022	6657	733	733	1051	1051					0.07931815108429419
AILGYKVVE	9	Unmodified	_AILGYKVVE_					0	0	0		ENST00000582147.1_1_18:334691-500598:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:334691-500598:-|nuORF	ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.294768	990.574983	0.42619	0.00021152	-3.9755	-0.001973	-3.5493	-0.0017615	496.29262244519253	21.037	0.294	20.842	20.681	20.975	-0.19577	0.009939	-0.00097971	NaN	37.159	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50807			1023	6657	733	733							0.07931815108429419
AILGYKVVE	9	Unmodified	_AILGYKVVE_					0	0	0		ENST00000582147.1_1_18:334691-500598:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:334691-500598:-|nuORF	ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.294768	990.574983	-1.1614	-0.00057642	-2.2093	-0.0010965	-3.3707	-0.0016729	496.293613240778	21.105	0.3956	20.892	20.673	21.069	-0.2128	0.060114	0.00077344	NaN	37.159	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41106			1024	6657	733	733							0.07931815108429419
AILHFSGGQL	10	Unmodified	_AILHFSGGQL_					0	0	0		nc|ENSG00000165269|O14520-2|AQP7;ENSG00000165269|ENST00000297988|AQP7	nc|ENSG00000165269|O14520-2|AQP7	nc|ENSG00000165269|O14520-2|AQP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.816650390625	2	521.787641	1041.56073	-0.65136	-0.00033987	4.4151	0.0023037	3.7637	0.0019639	521.7898623749234	65.306	0.44642	65.072	64.808	65.255	-0.2345					17	10	2	0	0	0	0.03519	1	7421	7421		42.864	0	1	134700			1025	7387	734	734	1052	1052					0.04161162680156849
AILHQHQC	8	Unmodified	_AILHQHQC_					0	0	0		nc|ENSG00000133069|O75069-2|TMCC2;ENSG00000133069|ENST00000358024|TMCC2	nc|ENSG00000133069|O75069-2|TMCC2	nc|ENSG00000133069|O75069-2|TMCC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.26031494140625	2	475.237261	948.45997	-0.10878	-5.1695E-05	1.0707	0.00050885	0.96195	0.00045715	475.2378464426667	43.61	0.81042	43.501	43.075	43.885	-0.10892					44	21	3	0	0	0	0.027866	1	4007	4007		37.028	12.826	1	209730			1026	4679	735	735	1053	1053					-0.016321925743795873
AILIDLTGN	9	Unmodified	_AILIDLTGN_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MSMS	OPSCC_39_ClassI_Rep-2	2	465.2676696777344	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.722	1	81.591	81.091	82.091	-0.13075								0	0	0	0.42073	1	10152	10152		60.118	3.3972	1		+		1027	26902	736	736	1054	1054					0.055826516946467564
AILIYSDKL	9	Unmodified	_AILIYSDKL_					0	0	0			REV__SLC18A2|p.P292S|1|0.19|ENSG00000165646|chr10:117255636-117255636|C/T|missense_variant	REV__SLC18A2|p.P292S|1|0.19|ENSG00000165646|chr10:117255636-117255636|C/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	518.3056640625	2	518.307875	1034.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.132	1	77.132	76.632	77.632	0								0	0	0	0.52604	1	9521	9521		49.442	7.0454	1		+		1028	37496	737	737	1055	1055					0.08528084279896575
AILKLLLEID	10	Unmodified	_AILKLLLEID_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2544555664062	2	570.865557	1139.71656	-0.025369	-1.4483E-05	0.67302	0.0003842	0.64765	0.00036972	570.8657255116663	40.395	0.25462	40.17	40.004	40.259	-0.225					9	6	2	0	0	0	0.03519	1	3474	3474		27.882	17.017	1	151520	+		1029	22840	738	738	1056	1056					0.15229188410899042
AILKQKPLV	9	Unmodified	_AILKQKPLV_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3239440917969	2	505.342052	1008.66955	0.12065	6.097E-05	2.1115	0.001067	2.2321	0.001128	505.3435100791922	79.14	0.53974	78.917	78.658	79.198	-0.22319					27	12	3	0	0	0	0.024541	1	9471	9471		17.365	0	1	282810	+		1030	20653	739	739	1057	1057					0.16556373650405476
AILLFKSL	8	Unmodified	_AILLFKSL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2521667480469	2	452.796946	903.57934	-0.19336	-8.7552E-05	0.5798	0.00026253	0.38644	0.00017498	452.7968936780011	75.159	0.33803	74.896	74.732	75.07	-0.26326					11	7	2	0	0	0	0.027866	1	8895	8895		25.45	0	1	76531	+		1031	26602	740	740	1058	1058					0.12369324321991826
AILLSYCSI	9	Unmodified	_AILLSYCSI_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7691955566406	2	491.767529	981.520504	-0.7429	-0.00036534	4.4838	0.002205	3.7409	0.0018396	491.7695662539174	27.746	0.71809	27.828	27.571	28.289	0.081291					41	17	4	0	0	0	0.29104	1	1506	1506		76.847	2.5916	1	2010500			1032	5882	741	741	1059	1059					0.029004799653421287
AILPLPSAF	9	Unmodified	_AILPLPSAF_					0	0	0		ENST00000169298.7_1_3:186648348-186681651:+|nuORF;ENST00000487031.5_1_3:186648357-186666598:+|nuORF;ENST00000463542.1_1_3:186648357-186681628:+|nuORF	ENST00000169298.7_1_3:186648348-186681651:+|nuORF	ENST00000169298.7_1_3:186648348-186681651:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2569580078125	2	464.778754	927.542954	-0.41227	-0.00019161	-4.107	-0.0019088	-4.5192	-0.0021004	464.77668954354164	27.072	0.17702	27.153	27.031	27.208	0.081293					7	4	2	0	0	0	0.024466	1	1400	1400		25.45	0	1	52856			1033	11114	742	742	1060	1060					0.07628447425281593
AILPPWLPK	9	Unmodified	_AILPPWLPK_					0	0	0		AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|15|1|anti-sense	AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|15|1|anti-sense	AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|15|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7994384765625	2	517.823495	1033.63244	-0.42893	-0.00022211	0.86564	0.00044825	0.4367	0.00022614	518.3250759228131	104.58	0.25518	104.45	104.39	104.64	-0.12927					9	5	2	0	0	0	0.024535	1	13032	13032		25.45	10.786	1	66152			1034	69	743	743	1061	1061					0.11696702104654833
AILPTSIFL	9	Unmodified	_AILPTSIFL_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.30181884765625	2	487.799686	973.584819	0.027837	1.3579E-05	-0.17111	-8.3467E-05	-0.14327	-6.9888E-05	487.7991674129927	98.263	0.71257	98.263	98.022	98.734	0					25	16	2	0	0	0	0.10076	1	12558	12558		110.34	18.147	1	187840			1035	2205	744	744	1062	1062					0.09697003113808478
AILPTSIFL	9	Unmodified	_AILPTSIFL_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.30078125	2	487.799686	973.584819	0.2553	0.00012454	-0.58643	-0.00028606	-0.33112	-0.00016152	487.79898393443096	98.306	0.84312	98.304	98.014	98.857	-0.0020752					28	19	2	0	0	0	0.15889	1	12487	12487		97.473	17.533	1	215570			1036	2205	744	744	1063	1063					0.09697003113808478
AILQNDKT	8	Unmodified	_AILQNDKT_					0	0	0			REV__ENST00000515849.2_1_5:114726056-114726176:-|nuORF	REV__ENST00000515849.2_1_5:114726056-114726176:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2539367675781	2	451.750724	901.486896	-0.33913	-0.0001532	-0.17987	-8.1256E-05	-0.519	-0.00023446	451.75086719635647	36.54	0.55028	36.578	36.374	36.924	0.03804					34	14	3	0	0	0	0.027866	1	2899	2899		47.916	5.5195	1	681430	+		1037	34212	745	745	1064	1064					0.03221194517800541
AILQNDKT	8	Unmodified	_AILQNDKT_					0	0	0			REV__ENST00000515849.2_1_5:114726056-114726176:-|nuORF	REV__ENST00000515849.2_1_5:114726056-114726176:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.750724	901.486896	0.33184	0.00014991	-0.49427	-0.00022329	-0.16243	-7.3377E-05	451.7505168410528	36.63	0.4353	36.63	36.37	36.805	0	0.075304	-0.00029939	NaN	47.916	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758410	+		1038	34212	745	745							0.03221194517800541
AILRQWVP	8	Unmodified	_AILRQWVP_					0	0	0		ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4	ENSG00000115295|ENST00000320081|CLIP4	ENSG00000115295|ENST00000320081|CLIP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.79620361328125	2	491.795269	981.575986	0.18124	8.9134E-05	0.94681	0.00046563	1.128	0.00055477	491.7954877774719	47.616	1.6243	47.429	46.316	47.94	-0.18684					123	44	5	0	0	0	1.0574	1	4674	4674		25.45	1.2474	1	5640400			1039	3429	746	746	1065	1065					0.08446074267988024
AILSKILV	8	Unmodified	_AILSKILV_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7846984863281	2	428.796946	855.57934	-0.68941	-0.00029562	2.7022	0.0011587	2.0128	0.00086307	428.79844358973116	26.142	0.41666	25.979	25.716	26.133	-0.16331					23	12	3	0	0	0	0.027866	1	1305	1305		31.955	0	1	363090			1040	8614	747	747	1066	1066					0.14577324321999185
AILSKILV	8	Unmodified	_AILSKILV_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	428.796946	855.57934	-0.28304	-0.00012137	5.4538	0.0023386	5.1708	0.0022172	428.7993245259199	26.218	0.44249	25.982	25.72	26.162	-0.23603	0.0016078	0.0013364	NaN	31.955	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385980			1041	8614	747	747							0.14577324321999185
AILTAGDLLL	10	Unmodified	_AILTAGDLLL_					0	0	0			REV__HDHD2|p.P139T|1|0.38|ENSG00000167220|chr18:47115329-47115329|G/T|missense_variant	REV__HDHD2|p.P139T|1|0.38|ENSG00000167220|chr18:47115329-47115329|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.286865234375	2	500.307875	998.601197	0.31099	0.00015559	-0.93943	-0.00047001	-0.62844	-0.00031441	500.30716429092746	89.503	0.88113	89.481	89.033	89.914	-0.021645					41	20	3	0	0	0	0.03519	1	11269	11269		60.972	28.16	1	403330	+		1042	36094	748	748	1067	1067					0.10184084279910621
AILVIAEAFRY	11	Unmodified	_AILVIAEAFRY_					0	0	0		nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3	nc|ENSG00000125675|P42263|GRIA3	nc|ENSG00000125675|P42263|GRIA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.5928039550781	3	422.579929	1264.71796	0.17322	7.32E-05	-1.4318	-0.00060507	-1.2586	-0.00053187	422.5785088426559	50.105	0.36891	49.825	49.584	49.953	-0.27977					14	9	3	0	0	0	0.024748	1	5079	5079		24.232	4.9691	1	145570			1043	4126	749	749	1068	1068					0.0961882249964674
AILVILGSP	9	Unmodified	_AILVILGSP_					0	0	0		ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.78790283203125	2	441.786579	881.558604	0.87176	0.00038513	2.2048	0.00097404	3.0765	0.0013592	441.78747647612784	40.712	1.9602	40.589	40.197	42.158	-0.12317					202	55	5	0	0	0	0.90698	2	3583	3583;3595		31.955	6.5047	1	30089000			1044	11620	750	750	1069;1070	1069					0.11308733942337312
AILVILGSP	9	Unmodified	_AILVILGSP_					0	0	0		ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	2	441.786579	881.558604	-0.38487	-0.00017003	3.5904	0.0015862	3.2055	0.0014162	441.7880479717175	42.934	0.83905	42.696	42	42.839	-0.23736					61	21	6	0	0	0	0.78069	1	3891	3891		40.573	0	1	6899500			1045	11620	750	750	1071	1071					0.11308733942337312
AILVILGSP	9	Unmodified	_AILVILGSP_					0	0	0		ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.787841796875	2	441.786579	881.558604	-0.21775	-9.62E-05	3.3208	0.0014671	3.103	0.0013709	441.78792845566716	42.96	0.76768	42.734	42.105	42.873	-0.22597					49	19	4	0	0	0	0.90698	1	3903	3903		31.955	0	1	7360500			1046	11620	750	750	1072	1072					0.11308733942337312
AILVILGSP	9	Unmodified	_AILVILGSP_					0	0	0		ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	ENST00000267812.3_1_15:44097132-44097216:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.78790283203125	2	441.786579	881.558604	-0.43648	-0.00019283	3.3822	0.0014942	2.9457	0.0013014	441.78796500551965	43.27	2.2731	43.044	42.833	45.106	-0.22597					132	61	5	0	0	0	0.90698	1	3919	3919		31.955	0	1	17296000			1047	11620	750	750	1073	1073					0.11308733942337312
AILVKQVNP	9	Unmodified	_AILVKQVNP_					0	0	0		SBNO1|p.E1223Q|1|0.24|ENSG00000139697|chr12:123304683-123304683|C/G|missense_variant	SBNO1|p.E1223Q|1|0.24|ENSG00000139697|chr12:123304683-123304683|C/G|missense_variant	SBNO1|p.E1223Q|1|0.24|ENSG00000139697|chr12:123304683-123304683|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.247802734375	2	491.30821	980.601866	0.018305	8.9934E-06	3.9745	0.0019527	3.9928	0.0019617	491.3100490745993	68.369	0.53985	68.369	68.14	68.68	0					28	13	3	0	0	0	0.024262	1	8204	8204		38.806	0	1	274340			1048	37855	751	751	1074	1074					0.11078923719605882
AILYCFVN	8	Unmodified	_AILYCFVN_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7774963378906	2	471.741314	941.468075	0.48932	0.00023083	2.5278	0.0011925	3.0171	0.0014233	471.7431298654836	28.713	0.37316	28.794	28.533	28.907	0.080812					18	8	3	0	0	0	0.027866	1	1639	1639		21.702	1.2205	1	46556			1049	3178	752	752	1075	1075					-0.0050005837759954375
AILYPLGHS	9	Unmodified	_AILYPLGHS_					0	0	0		ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	MSMS	OPSCC_40_ClassI_Rep-1	4	485.772216796875	2	485.77146	969.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.21	1	103.08	102.58	103.58	-0.12724								0	0	0	0.63881	1	12829	12829		33.516	5.6333	1				1050	3863	753	753	1076	1076					0.0423837527713431
AIMAIRRN	8	Unmodified	_AIMAIRRN_					0	0	0		ENST00000495356.5_1_X:153052908-153059781:-|nuORF;nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	ENST00000495356.5_1_X:153052908-153059781:-|nuORF	ENST00000495356.5_1_X:153052908-153059781:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.77740478515625	2	472.776554	943.538554	-0.34485	-0.00016304	0.012061	5.702E-06	-0.33279	-0.00015733	472.7763802643566	79.401	2.2977	79.229	78.195	80.493	-0.17226					108	54	3	0	0	0	1.0239	1	9882	9882		33.516	0	1	1264700			1051	1370	754	754	1077	1077					0.06452659730723553
AIMMFFPE	8	Unmodified	_AIMMFFPE_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2977294921875	2	493.229725	984.444896	-0.70396	-0.00034722	3.8522	0.0019	3.1482	0.0015528	493.2317457306083	60.842	0.19645	60.589	60.463	60.66	-0.25373					6	4	2	0	0	0	0.027866	1	6758	6758		31.955	12.851	1	62601	+		1052	23567	755	755	1078	1078					-0.04794820486574736
AIMRVFAPL	9	Unmodified	_AIMRVFAPL_					0	0	0			REV__PITPNB|p.V68L|1|0.11|ENSG00000180957|chr22:27897888-27897888|C/G|missense_variant	REV__PITPNB|p.V68L|1|0.11|ENSG00000180957|chr22:27897888-27897888|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7519836425781	2	509.29933	1016.58411	-0.12487	-6.3598E-05	2.5451	0.0012962	2.4203	0.0012326	509.3009126978239	43.663	0.72524	43.693	43.267	43.992	0.030823					47	19	3	0	0	0	0.02309	1	4032	4032		47.916	16.386	1	690200	+		1053	37377	756	756	1079	1079					0.07647885193102866
AIMSRRAI	8	Unmodified	_AIMSRRAI_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2694091796875	2	459.271104	916.527655	0.46071	0.00021159	-3.9809	-0.0018283	-3.5202	-0.0016167	459.26914099451005	36.692	0.82137	36.692	36.298	37.12	0					51	21	3	0	0	0	0.71833	1	2937	2937		65.803	1.5959	1	2063600			1054	6925	757	757	1080	1080					0.06605257356443417
AIMWSVVIH	9	Unmodified	_AIMWSVVIH_					0	0	0			REV__ENSG00000169100|ENST00000381401|SLC25A6	REV__ENSG00000169100|ENST00000381401|SLC25A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7743530273438	2	528.288963	1054.56337	-0.61424	-0.0003245	-3.5036	-0.0018509	-4.1179	-0.0021754	528.286991187341	31.718	0.76218	31.729	31.382	32.144	0.011797					55	18	4	0	0	0	0.024436	1	2170	2170		38.806	23.941	1	1132500	+		1055	26320	758	758	1081	1081					0.038272948134363105
AINADLAAL	9	Unmodified	_AINADLAAL_					0	0	0			REV__nc|ENSG00000175455|Q49A88-5|CCDC14	REV__nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.24737548828125	2	436.247818	870.481082	-0.80408	-0.00035078	-0.052383	-2.2852E-05	-0.85647	-0.00037363	436.2477168788436	35.189	2.4673	35.168	34.244	36.711	-0.021763					144	65	5	0	0	0	0.16468	1	2690	2690		96.19	2.184	1	12541000	+		1056	26950	759	759	1082	1082					0.04066096006135922
AINADLAAL	9	Unmodified	_AINADLAAL_					0	0	0			REV__nc|ENSG00000175455|Q49A88-5|CCDC14	REV__nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.2475891113281	2	436.247818	870.481082	-0.07547	-3.2924E-05	-0.90278	-0.00039383	-0.97825	-0.00042676	436.2473427352964	35.168	1.5459	35.212	34.593	36.139	0.044056					129	40	5	0	0	0	0.23085	1	2599	2599		84.916	5.2029	1	12445000	+		1057	26950	759	759	1083	1083					0.04066096006135922
AINDFLDLT	9	Unmodified	_AINDFLDLT_					0	0	0			REV__ENSG00000283567|ENST00000635964|C19orf85	REV__ENSG00000283567|ENST00000635964|C19orf85	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.28399658203125	2	511.263665	1020.51278	-0.67036	-0.00034273	-1.8672	-0.00095465	-2.5376	-0.0012974	511.26254895249826	21.57	0.87181	21.642	21.057	21.929	0.071487					42	17	3	0	0	0	0.024527	1	625	625		39.253	5.7372	1	197840	+		1058	29246	760	760	1084	1084					0.003340439694284214
AINDRYSDFLV	11	Unmodified	_AINDRYSDFLV_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.2573547363281	3	438.222582	1311.64592	-0.54705	-0.00023973	-3.2524	-0.0014253	-3.7994	-0.001665	438.22209434428305	30.983	0.24781	30.742	30.627	30.875	-0.24109					8	5	2	0	0	0	0.024723	1	2024	2024		26.063	12.555	1	52361	+		1059	21936	761	761	1085	1085					0.0025586335527805204
AINDRYSDFLV	11	Unmodified	_AINDRYSDFLV_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	438.222582	1311.64592	0.25377	0.00011121	0.40955	0.00017947	0.66332	0.00029068	438.22325649833215	31.026	0.20459	30.874	30.724	30.928	-0.15231	0.065944	0.0024143	NaN	26.063	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40368	+		1060	21936	761	761							0.0025586335527805204
AINKYPPI	8	Unmodified	_AINKYPPI_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2292785644531	2	458.268553	914.522553	-0.64163	-0.00029404	-4.2524	-0.0019487	-4.894	-0.0022428	458.26640062533386	28.601	0.584	28.601	28.406	28.99	0					18	13	2	0	0	0	0.027866	1	1722	1722		60.294	31.144	1	55926			1061	10468	762	762	1086	1086					0.06187276765456318
AINKYPPI	8	Unmodified	_AINKYPPI_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	458.268553	914.522553	0.083905	3.8451E-05	-4.5905	-0.0021037	-4.5066	-0.0020652	458.2663607763884	28.217	0.37249	28.298	28.08	28.452	0.080811	-0.12204	-0.00082941	NaN	60.294	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101270			1062	10468	762	762							0.06187276765456318
AINSQKAVL	9	Unmodified	_AINSQKAVL_					0	0	0		nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A;ENST00000527401.5_1_11:45992606-45992897:-|nuORF	nc|ENSG00000135365|Q96BD5-2|PHF21A	nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2636413574219	2	472.282192	942.549831	-0.50231	-0.00023723	-0.87788	-0.00041461	-1.3802	-0.00065184	472.2815174524165	62.875	0.67715	62.635	62.419	63.096	-0.23926					40	16	3	0	0	0	0.019502	1	7325	7325		124.59	25.219	1	2060700			1063	4885	763	763	1087	1087					0.0762576030585933
AINSQKAVL	9	Unmodified	_AINSQKAVL_					0	0	0		nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A;ENST00000527401.5_1_11:45992606-45992897:-|nuORF	nc|ENSG00000135365|Q96BD5-2|PHF21A	nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	472.282192	942.549831	-0.30926	-0.00014606	-0.84366	-0.00039845	-1.1529	-0.00054451	472.2816546073445	62.943	0.50013	62.684	62.541	63.041	-0.25824	0.027149	0.00022825	NaN	124.59	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649300			1064	4885	763	763							0.0762576030585933
AIPELALF	8	Unmodified	_AIPELALF_					0	0	0		ENST00000455909.5_1_7:55750344-55756724:-|nuORF	ENST00000455909.5_1_7:55750344-55756724:-|nuORF	ENST00000455909.5_1_7:55750344-55756724:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.24554443359375	2	437.257654	872.500755	-0.28428	-0.0001243	-3.4122	-0.001492	-3.6964	-0.0016163	437.2561025666025	28.035	0.55516	28.031	27.731	28.286	-0.0042019					22	13	2	0	0	0	0.027866	1	1547	1547		44.531	0	1	67929			1065	14590	764	764	1088	1088					0.05940472016879994
AIPELKASIKK	11	Unmodified	_AIPELKASIKK_					0	0	0		ENSG00000146701|ENST00000315758|MDH2;nc|ENSG00000146701|P40926-2|MDH2	ENSG00000146701|ENST00000315758|MDH2	ENSG00000146701|ENST00000315758|MDH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.3795166015625	2	599.381906	1196.74926	-0.67183	-0.00040268	-2.4976	-0.001497	-3.1695	-0.0018997	599.3803918245654	102.23	0.72807	102.24	101.98	102.71	0.0073471					50	16	4	0	0	0	1.0075	1	13053	13053		35.152	5.982	1	866470			1066	5902	765	765	1089	1089					0.15875395533726078
AIPELKASIKK	11	Unmodified	_AIPELKASIKK_					0	0	0		ENSG00000146701|ENST00000315758|MDH2;nc|ENSG00000146701|P40926-2|MDH2	ENSG00000146701|ENST00000315758|MDH2	ENSG00000146701|ENST00000315758|MDH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.37890625	2	599.381906	1196.74926	-0.43786	-0.00026245	-2.7572	-0.0016526	-3.1951	-0.0019151	599.3801501968157	102.33	0.59103	102.21	102	102.59	-0.12666					41	13	5	0	0	0	1.0344	1	12734	12734		29.17	1.2878	1	662760			1067	5902	765	765	1090	1090					0.15875395533726078
AIPLVLVSG	9	Unmodified	_AIPLVLVSG_					0	0	0		ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.75604248046875	2	434.778754	867.542954	1.4349	0.00062386	1.6968	0.00073773	3.1317	0.0013616	434.7793816312536	63.138	2.0234	63.192	62.434	64.457	0.054104					75	53	2	0	0	0	0.024466	1	7334	7334		18.324	0	1	155990			1068	2500	766	766	1091	1091					0.10388447425293634
AIPQSTATL	9	Unmodified	_AIPQSTATL_					0	0	0			REV__nc|ENSG00000130939|O95155-3|UBE4B	REV__nc|ENSG00000130939|O95155-3|UBE4B	MSMS	OPSCC_39_ClassI_Rep-3	3	451.2539367675781	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.813	1	36.851	36.351	37.351	0.038044								0	0	0	0.51283	1	2899	2899		51.193	10.415	1		+		1069	23168	767	767	1092	1092					0.03742078660570769
AIPSPGKFR	9	Unmodified	_AIPSPGKFR_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7843933105469	2	486.784902	971.55525	0.35347	0.00017206	-1.9785	-0.00096312	-1.6251	-0.00079105	486.78388065302573	100.91	2.3972	100.74	100.32	102.72	-0.17178					119	58	3	0	0	0	0.85329	1	12654	12654		35.618	2.1027	1	13095000			1070	2966	768	768	1093	1093					0.06833483888328828
AIPTVQLATDF	11	Unmodified	_AIPTVQLATDF_					0	0	0		ENST00000414938.1_1_3:4792655-4792829:-|nuORF	ENST00000414938.1_1_3:4792655-4792829:-|nuORF	ENST00000414938.1_1_3:4792655-4792829:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	588.3172607421875	2	588.318971	1174.62339	0.7752	0.00045607	-4.2748	-0.0025149	-3.4996	-0.0020589	588.3167665933652	28.508	0.95608	28.588	28.289	29.245	0.080812					71	23	5	0	0	0	0.9728	1	1608	1608		42.864	5.0528	1	3044400			1071	13867	769	769	1094	1094					0.043062639576419315
AIQDEIRSV	9	Unmodified	_AIQDEIRSV_					0	0	0		ENST00000504707.1_1_4:120981275-120987923:-|nuORF;ENSG00000164109|ENST00000296509|MAD2L1	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2868041992188	2	515.780013	1029.54547	-0.43056	-0.00022207	3.5949	0.0018542	3.1644	0.0016321	515.7801089879232	50.762	0.94818	50.762	50.411	51.359	0					67	26	4	0	0	0	0.24031	2	5343	5333;5343		83.647	18.182	1	2560100			1072	15720	770	770	1095;1096	1096					0.03188251092274186
AIQDEIRSV	9	Unmodified	_AIQDEIRSV_					0	0	0		ENST00000504707.1_1_4:120981275-120987923:-|nuORF;ENSG00000164109|ENST00000296509|MAD2L1	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2867431640625	2	515.780013	1029.54547	-0.24517	-0.00012646	3.5052	0.0018079	3.26	0.0016814	515.78017629184	50.911	0.97892	50.762	50.425	51.404	-0.14916					70	26	4	0	0	0	0.31105	1	5350	5350		74.165	21.228	1	3189100			1073	15720	770	770	1097	1097					0.03188251092274186
AIQFGNYKK	9	Unmodified	_AIQFGNYKK_					0	0	0		ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7714233398438	2	534.795466	1067.57638	-0.69323	-0.00037074	0.020228	1.0818E-05	-0.673	-0.00035992	534.7952266943527	54.637	1.1694	54.491	53.887	55.057	-0.14609					47	32	2	0	0	0	0.024477	1	5880	5880		35.618	14.671	1	163920			1074	9140	771	771	1098	1098					0.045294491971844764
AIQRFFAY	8	Unmodified	_AIQRFFAY_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;nc|ENSG00000146802|Q9H0V1-2|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.80682373046875	2	508.271627	1014.5287	0.090727	4.6114E-05	-4.0365	-0.0020516	-3.9457	-0.0020055	508.2695085839633	20.587	0.34471	20.419	20.246	20.591	-0.16774					12	6	2	0	0	0	0.027866	1	577	577		46.766	35.255	1	51414			1075	5907	772	772	1099	1099					0.02201794996994977
AIRKLRPV	8	Unmodified	_AIRKLRPV_					0	0	0			REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF	REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.82623291015625	2	476.824361	951.634169	1.5122	0.00072105	1.4465	0.00068974	2.9587	0.0014108	476.82501575324966	106.21	0.38264	106.21	106.01	106.39	0					27	16	2	0	0	0	1.0574	1	13630	13630		15.636	0	1	134680	+		1076	25013	773	773	1100	1100					0.1564175591328194
AIRKTAIPF	9	Unmodified	_AIRKTAIPF_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7565612792969	2	508.816202	1015.61785	0.31363	0.00015958	-2.5403	-0.0012926	-2.2267	-0.001133	508.81455472173326	21.41	0.23646	21.233	21.113	21.35	-0.17721					6	4	2	0	0	0	0.024541	1	662	662		30.504	3.7075	1	28830	+		1077	26525	774	774	1101	1101					0.11066629956496854
AIRKTAIPF	9	Unmodified	_AIRKTAIPF_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.816202	1015.61785	-0.9196	-0.00046791	3.8517	0.0019598	2.9321	0.0014919	508.818161056244	21.56	0.33145	21.56	21.392	21.723	0	0.11523	0.00055077	NaN	29.15	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25472	+		1078	26525	774	774							0.11066629956496854
AIRKTAIPF	9	Unmodified	_AIRKTAIPF_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.816202	1015.61785	-0.4806	-0.00024454	3.3929	0.0017264	2.9123	0.0014818	508.81777874532895	21.632	0.37621	21.542	21.354	21.73	-0.090092	0.097117	8.3872E-05	NaN	29.15	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19171	+		1079	26525	774	774							0.11066629956496854
AIRLLFNE	8	Unmodified	_AIRLLFNE_					0	0	0			REV__ENST00000473417.5_1_3:125188296-125239016:-|nuORF	REV__ENST00000473417.5_1_3:125188296-125239016:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.28399658203125	2	488.284734	974.554916	-0.19056	-9.3045E-05	-0.85386	-0.00041693	-1.0444	-0.00050997	488.2844135114245	55.255	1.1397	55.105	54.608	55.747	-0.15036					109	31	6	0	0	0	0.81662	1	6093	6093		57.811	2.3071	1	54329000	+		1080	22127	775	775	1102	1102					0.0666206416847217
AIRLNRPLL	9	Unmodified	_AIRLNRPLL_					0	0	0			REV__ENST00000606377.6_3_11:31832493-31832604:-|nuORF	REV__ENST00000606377.6_3_11:31832493-31832604:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8035278320312	2	533.3482	1064.68185	-0.93426	-0.00049829	0.77684	0.00041433	-0.15742	-8.3958E-05	533.3484827863057	34.564	0.49363	34.564	34.332	34.826	0					25	12	3	0	0	0	0.024457	1	2555	2555		37.159	1.5408	1	203990	+		1081	35931	776	776	1103	1103					0.15209410113470767
AIRLPVLSP	9	Unmodified	_AIRLPVLSP_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.3109436035156	2	483.310752	964.606951	-0.24784	-0.00011978	0.66093	0.00031943	0.41309	0.00019965	483.3108008902651	67.384	1.009	67.096	66.623	67.632	-0.28834					68	24	4	0	0	0	0.62163	1	8019	8019		51.335	1.8939	1	2378900	+		1082	28172	777	777	1104	1104					0.12323227582214713
AIRNAMGSL	9	Unmodified	_AIRNAMGSL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7529296875	2	466.752744	931.490935	-0.89569	-0.00041807	1.2298	0.00057403	0.33415	0.00015597	466.7531120557608	43.482	0.6871	43.482	43.113	43.8	0					46	18	4	0	0	0	0.091713	1	4085	4085		113.41	8.665	1	2354400			1083	6741	778	778	1105	1105					0.02244960739869839
AIRNAMGSL	9	Unmodified	_AIRNAMGSL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7535400390625	2	466.752744	931.490935	-0.60894	-0.00028422	0.80027	0.00037353	0.19134	8.9308E-05	466.75289379040913	43.664	0.67899	43.519	43.169	43.848	-0.14471					43	18	3	0	0	0	0.016871	1	4085	4085		152.47	35.567	1	2322400			1084	6741	778	778	1106	1106					0.02244960739869839
AIRNAMGSL	9	Unmodified	_AIRNAMGSL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7524719238281	2	466.752744	931.490935	0.82731	0.00038615	-0.68954	-0.00032185	0.13777	6.4305E-05	466.7522101623715	43.571	0.79935	43.602	43.267	44.066	0.030827					50	21	4	0	0	0	0.057894	1	4034	4034		125.81	26.439	1	2235700			1085	6741	778	778	1107	1107					0.02244960739869839
AIRNAMGSL	9	Unmodified	_AIRNAMGSL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.752744	931.490935	-0.45292	-0.0002114	-4.1608	-0.0019421	-4.6138	-0.0021535	466.75083630434995	43.746	0.87432	43.641	43.19	44.064	-0.10468	0.026712	-0.0031735	NaN	152.47	26	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183490			1086	6741	778	778							0.02244960739869839
AIRNAMGSL	9	Unmodified	_AIRNAMGSL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.752744	931.490935	-1.1326	-0.00052863	-3.887	-0.0018143	-5.0196	-0.0023429	466.75102280217754	43.965	0.65247	43.746	43.455	44.108	-0.21939	0.13125	-0.0029179	NaN	152.47	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223960			1087	6741	778	778							0.02244960739869839
AIRNWHKP	8	Unmodified	_AIRNWHKP_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.8034973144531	2	511.288143	1020.56173	0.26961	0.00013785	-0.39332	-0.0002011	-0.12371	-6.3253E-05	511.2891688239227	52.494	0.19901	52.347	52.248	52.447	-0.14723					6	4	2	0	0	0	0.027866	1	5613	5613		26.796	1.222	1	26774	+		1088	36860	779	779	1108	1108					0.05227421839697399
AIRNWHKP	8	Unmodified	_AIRNWHKP_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.31622314453125	2	511.288143	1020.56173	-0.40934	-0.00020929	-0.57921	-0.00029614	-0.98855	-0.00050543	511.7896589614839	22.829	1.5882	22.754	22.082	23.67	-0.075296					74	35	4	0	0	0	0.027866	1	797	797		33.516	12.569	1	529150	+		1089	36860	779	779	1109	1109					0.05227421839697399
AIRPNLATV	9	Unmodified	_AIRPNLATV_					0	0	0			REV__ENST00000442741.1_1_13:42830025-42830667:+|nuORF	REV__ENST00000442741.1_1_13:42830025-42830667:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7777404785156	2	477.790184	953.565815	-0.075127	-3.5895E-05	0.52074	0.0002488	0.44561	0.00021291	477.7907712084466	27.13	0.37219	27.117	26.869	27.241	-0.012983					11	9	2	0	0	0	0.024457	1	1453	1453		29.15	0	1	136070	+		1090	32569	780	780	1110	1110					0.08717466542759666
AIRQTLKEP	9	Unmodified	_AIRQTLKEP_					0	0	0			REV__ENSG00000145358|ENST00000273990|DDIT4L	REV__ENSG00000145358|ENST00000273990|DDIT4L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2952880859375	2	528.314023	1054.61349	-1.4041	-0.0007418	0.7956	0.00042033	-0.6085	-0.00032148	528.3142397068715	44.708	0.69637	44.708	44.451	45.147	0					48	19	3	0	0	0	0.024477	1	4354	4354		20.947	0	1	3397900	+		1091	24403	781	781	1111	1111					0.08837120742964544
AIRTQAVSH	9	Unmodified	_AIRTQAVSH_					0	0	0		ENST00000407627.6_1_19:8026281-8026599:-|nuORF	ENST00000407627.6_1_19:8026281-8026599:-|nuORF	ENST00000407627.6_1_19:8026281-8026599:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	491.7746887207031	2	491.775065	981.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.494	1	23.494	22.994	23.994	0								0	0	0	0.32793	1	933	933		66.429	0	1				1092	13751	782	782	1112	1112					0.04407107877557337
AIRTQAVSH	9	Unmodified	_AIRTQAVSH_					0	0	0		ENST00000407627.6_1_19:8026281-8026599:-|nuORF	ENST00000407627.6_1_19:8026281-8026599:-|nuORF	ENST00000407627.6_1_19:8026281-8026599:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	491.77471923828125	2	491.775065	981.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.489	1	23.428	22.928	23.928	-0.060862								0	0	0	0.48579	1	921	921		54.776	3.5836	1				1093	13751	782	782	1113	1113					0.04407107877557337
AIRTQAVSH	9	Unmodified	_AIRTQAVSH_					0	0	0		ENST00000407627.6_1_19:8026281-8026599:-|nuORF	ENST00000407627.6_1_19:8026281-8026599:-|nuORF	ENST00000407627.6_1_19:8026281-8026599:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	491.77471923828125	2	491.775065	981.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.37	1	23.447	22.947	23.947	0.076241								0	0	0	0.47068	1	872	872		56.721	5.3856	1				1094	13751	782	782	1114	1114					0.04407107877557337
AISLHKCR	8	Unmodified	_AISLHKCR_					0	0	0		ENSG00000117525|ENST00000334047|F3	ENSG00000117525|ENST00000334047|F3	ENSG00000117525|ENST00000334047|F3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.25091552734375	2	464.263279	926.512005	-0.56183	-0.00026084	-0.40341	-0.00018729	-0.96523	-0.00044812	464.262590170843	47.966	0.25557	47.966	47.748	48.003	0					13	7	2	0	0	0	0.027866	1	4831	4831		23.042	2.5607	1	1202200			1095	3637	783	783	1115	1115					0.045809708394017434
AISLHKCR	8	Unmodified	_AISLHKCR_					0	0	0		ENSG00000117525|ENST00000334047|F3	ENSG00000117525|ENST00000334047|F3	ENSG00000117525|ENST00000334047|F3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.263279	926.512005	0.067998	3.1569E-05	6.6926	0.0031071	6.7606	0.0031387	464.2667449947463	48.205	0.22329	48.018	47.863	48.086	-0.18684	0.054324	0.0050517	NaN	30.504	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72272			1096	3637	783	783							0.045809708394017434
AISLQEFSH	9	Unmodified	_AISLQEFSH_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.7957153320312	2	516.261456	1030.50836	-1.4158	-0.00073091	2.4482	0.0012639	1.0325	0.00053302	516.2623339099604	64.973	0.43681	64.973	64.654	65.091	0					17	11	2	0	0	0	0.024205	1	7635	7635		53.351	16.905	1	126610	+		1097	23335	784	784	1116	1116					-0.005674204534898308
AISLQEFSH	9	Unmodified	_AISLQEFSH_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.261456	1030.50836	-0.50679	-0.00026163	0.26885	0.0001388	-0.23793	-0.00012284	516.2616236871239	65.333	0.5769	65.099	64.93	65.507	-0.2345	0.041288	-0.00054707	NaN	53.351	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175660	+		1098	23335	784	784							-0.005674204534898308
AISLQEFSH	9	Unmodified	_AISLQEFSH_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.261456	1030.50836	-1.3235	-0.00068326	0.14569	7.5215E-05	-1.1778	-0.00060805	516.2617289858501	65.348	0.44911	65.146	64.899	65.348	-0.20254	0.088306	-0.00067424	NaN	53.351	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141490	+		1099	23335	784	784							-0.005674204534898308
AISLQEFSH	9	Unmodified	_AISLQEFSH_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.261456	1030.50836	-0.4517	-0.00023319	1.0607	0.00054757	0.60895	0.00031438	516.2616614695067	65.338	0.4911	65.087	64.946	65.437	-0.25112	0.029711	0.00027048	NaN	53.351	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174790	+		1100	23335	784	784							-0.005674204534898308
AISRTWSDC	9	Unmodified	_AISRTWSDC_					0	0	0			REV__ENST00000519726.2_1_8:8025406-8025547:-|nuORF	REV__ENST00000519726.2_1_8:8025406-8025547:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7691650390625	2	519.737291	1037.46003	-0.32914	-0.00017107	-3.8893	-0.0020214	-4.2185	-0.0021925	519.7351172508043	65.857	0.6955	65.605	65.27	65.966	-0.25112					42	16	4	0	0	0	0.024374	1	7527	7527		25.574	0	1	939510	+		1101	34269	785	785	1117	1117					-0.05720237365017056
AISVIEFKP	9	Unmodified	_AISVIEFKP_					0	0	0		ENSG00000100218|ENST00000216036|RSPH14	ENSG00000100218|ENST00000216036|RSPH14	ENSG00000100218|ENST00000216036|RSPH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3233947753906	2	502.294768	1002.57498	-0.22877	-0.00011491	-0.01266	-6.3591E-06	-0.24143	-0.00012127	502.2946348826233	73.853	0.44785	73.663	73.316	73.764	-0.19026					19	11	2	0	0	0	0.024487	1	8646	8646		31.955	1.4512	1	1243500			1102	2150	786	786	1118	1118					0.07379815108436105
AISVNHVKRAI	11	Unmodified	_AISVNHVKRAI_					0	0	0		ENSG00000123552|ENST00000500704|USP45;ENST00000369232.2_1_6:99949817-99958096:-|nuORF;nc|ENSG00000123552|Q70EL2-2|USP45	ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3670043945312	2	604.367121	1206.71969	-1.4686	-0.00088758	0.85378	0.00051599	-0.61484	-0.00037159	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.0074	1	13232	13232		13.454	0	1	4767200			1103	3984	787	787	1119	1119					0.12459876308275852
AISVNHVKRAI	11	Unmodified	_AISVNHVKRAI_					0	0	0		ENSG00000123552|ENST00000500704|USP45;ENST00000369232.2_1_6:99949817-99958096:-|nuORF;nc|ENSG00000123552|Q70EL2-2|USP45	ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3663330078125	2	604.367121	1206.71969	-1.0438	-0.00063086	0.55081	0.00033289	-0.49303	-0.00029797	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.0074	1	13186	13186		19.104	0	1	4517100			1104	3984	787	787	1120	1120					0.12459876308275852
AISVNHVKRAI	11	Unmodified	_AISVNHVKRAI_					0	0	0		ENSG00000123552|ENST00000500704|USP45;ENST00000369232.2_1_6:99949817-99958096:-|nuORF;nc|ENSG00000123552|Q70EL2-2|USP45	ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3670043945312	2	604.367121	1206.71969	0.12428	7.5109E-05	-0.8283	-0.0005006	-0.70403	-0.00042549	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.0022	1	12847	12847		26.693	7.5894	1	4482300			1105	3984	787	787	1121	1121					0.12459876308275852
AITFRYAVE	9	Unmodified	_AITFRYAVE_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2882690429688	2	535.287474	1068.5604	-0.11764	-6.2969E-05	0.44956	0.00024064	0.33193	0.00017768	535.2877259153852	80.983	1.1487	80.745	80.45	81.599	-0.23784					57	27	3	0	0	0	0.56934	1	9719	9719		54.776	8.3195	1	1374400			1106	981	788	788	1122	1122					0.028857429602794582
AITGHHVP	8	Unmodified	_AITGHHVP_					0	0	0		ENSG00000160396|ENST00000291823|HIPK4	ENSG00000160396|ENST00000291823|HIPK4	ENSG00000160396|ENST00000291823|HIPK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8916015625	2	416.22722	830.439886	-0.82469	-0.00034326	3.0808	0.0012823	2.2561	0.00093905	416.22789908884636	33.46	0.36068	33.294	33.156	33.517	-0.16565					12	8	2	0	0	0	0.027866	1	2385	2385		26.796	0	1	52294			1107	6811	789	789	1123	1123					0.017883797573290394
AITLQVKQ	8	Unmodified	_AITLQVKQ_					0	0	0			REV__nc|ENSG00000181396|Q6PK18-2|OGFOD3	REV__nc|ENSG00000181396|Q6PK18-2|OGFOD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.77880859375	2	450.779285	899.544017	1.6968	0.0007649	-1.3342	-0.00060145	0.36259	0.00016345	450.77846133731214	20.124	0.39456	20.192	20.021	20.415	0.068901					15	7	3	0	0	0	0.91239	1	464	464		50.025	4.0726	1	90632	+		1108	27402	790	790	1124	1124					0.09022661794188025
AITQQSIS	8	Unmodified	_AITQQSIS_					0	0	0			REV__ENSG00000136867|ENST00000259392|SLC31A2	REV__ENSG00000136867|ENST00000259392|SLC31A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2295837402344	2	424.229625	846.444697	-0.80057	-0.00033962	1.271	0.0005392	0.47045	0.00019958	424.23012630916554	24.102	1.3085	24.102	23.566	24.874	0					70	29	3	0	0	0	0.39824	1	1020	1020		97.473	1.2823	1	2836600	+		1109	23692	791	791	1125	1125					0.015332191094330483
AITSVHKVF	9	Unmodified	_AITSVHKVF_					0	0	0			REV__ENST00000506611.1_1_5:14474144-14477180:+|nuORF	REV__ENST00000506611.1_1_5:14474144-14477180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2904052734375	2	501.292559	1000.57057	0.0063351	3.1757E-06	-3.9148	-0.0019624	-3.9084	-0.0019593	501.29041154116453	88.404	1.9279	88.273	87.955	89.883	-0.13135					92	45	3	0	0	0	0.98697	1	10759	10759		23.042	0	1	1364200	+		1110	34034	792	792	1126	1126					0.07030350685522535
AITSVQQRL	9	Unmodified	_AITSVQQRL_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2999572753906	2	508.298373	1014.58219	0.036589	1.8598E-05	-0.47802	-0.00024298	-0.44143	-0.00022438	508.2979574980609	42.467	0.81675	42.467	42.222	43.038	0					50	22	3	0	0	0	0.03849	1	3915	3915		134.81	33.21	1	3994500			1111	3833	793	793	1127	1127					0.07548547708859132
AITSVQQRL	9	Unmodified	_AITSVQQRL_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2990417480469	2	508.298373	1014.58219	-0.1102	-5.6014E-05	-0.20128	-0.00010231	-0.31148	-0.00015833	508.29805980015607	42.668	0.78466	42.528	42.278	43.063	-0.13929					53	21	4	0	0	0	0.053401	2	3933	3921;3933		127.46	30.333	1	3582200			1112	3833	793	793	1128;1129	1129					0.07548547708859132
AITSVQQRL	9	Unmodified	_AITSVQQRL_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2994384765625	2	508.298373	1014.58219	-0.015209	-7.7305E-06	-0.34444	-0.00017508	-0.35964	-0.00018281	508.2979807528421	42.592	0.82808	42.618	42.358	43.186	0.026012					56	22	4	0	0	0	0.053401	1	3876	3876		127.46	17.342	1	3635800			1113	3833	793	793	1130	1130					0.07548547708859132
AITTATTPSL	10	Unmodified	_AITTATTPSL_					0	0	0		nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62	nc|ENSG00000075702|O43379|WDR62	nc|ENSG00000075702|O43379|WDR62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7669677734375	2	488.27149	974.528426	0.1891	9.233E-05	-2.5435	-0.0012419	-2.3544	-0.0011496	488.2699996611688	39.998	0.75414	39.998	39.627	40.381	0					26	20	2	0	0	0	0.03519	1	3485	3485		84.916	5.2029	1	2524200			1114	1568	794	794	1131	1131					0.040143304864727725
AITVKQQVAPL	11	Unmodified	_AITVKQQVAPL_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.3766479492188	2	584.358431	1166.70231	-0.97723	-0.00057106	0.0018629	1.0886E-06	-0.97537	-0.00056997	584.3581177071515	46.403	0.308	46.142	45.968	46.276	-0.26118					10	7	2	0	0	0	0.024804	1	4449	4449		56.434	37.33	1	102890			1115	653	795	795	1132	1132					0.1256253598260173
AIVDKRVL	8	Unmodified	_AIVDKRVL_					0	0	0		ENSG00000179598|ENST00000321560|PLD6;ENST00000427497.3_1_17:17106083-17118331:-|nuORF	ENSG00000179598|ENST00000321560|PLD6	ENSG00000179598|ENST00000321560|PLD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2952575683594	2	457.295102	912.575651	0.38177	0.00017458	-0.37654	-0.00017219	0.005228	2.3907E-06	457.2948357622591	55.981	0.77892	55.981	55.61	56.388	0					62	21	4	0	0	0	0.68535	1	6239	6239		68.485	11.764	1	6219700			1116	8908	796	796	1133	1133					0.11586654548136721
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2790832519531	2	464.279118	926.543683	0.033484	1.5546E-05	-1.0483	-0.00048669	-1.0148	-0.00047114	464.2788294592015	51.586	2.6274	51.586	50.675	53.302	0					167	71	5	0	0	0	0.013065	14	5455	5397;5408;5419;5431;5443;5455;5467;5479;5491;5503;5515;5527;5539;5567		176.44	66.785	1	107340000			1117	9070	797	797	1134;1135;1136;1137;1138;1139;1140;1141;1142;1143;1144;1145;1146;1147	1139					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2789001464844	2	464.279118	926.543683	-0.53196	-0.00024698	-0.46581	-0.00021627	-0.99777	-0.00046325	464.2791088147299	51.74	1.7702	51.593	50.759	52.53	-0.14735					149	48	5	0	0	0	0.013065	14	5515	5398;5408;5420;5431;5443;5455;5467;5479;5491;5503;5515;5527;5541;5555		171.53	63.776	1	107030000			1118	9070	797	797	1148;1149;1150;1151;1152;1153;1154;1155;1156;1157;1158;1159;1160;1161	1158					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	2	464.279118	926.543683	-0.3216	-0.00014931	-0.75324	-0.00034971	-1.0748	-0.00049903	464.2790151288784	51.474	2.507	51.561	50.75	53.257	0.087009					177	67	5	0	0	0	0.014738	14	5362	5316;5326;5338;5350;5362;5374;5386;5398;5410;5422;5435;5449;5462;5474		163.15	75.77	1	102330000			1119	9070	797	797	1162;1163;1164;1165;1166;1167;1168;1169;1170;1171;1172;1173;1174;1175	1166					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2791748046875	2	464.279118	926.543683	0.51063	0.00023708	-1.0754	-0.0004993	-0.56479	-0.00026222	464.27864091371606	51.639	1.6615	51.521	50.779	52.44	-0.11876					143	43	6	0	0	0	0.015752	9	5297	5262;5272;5285;5297;5308;5320;5332;5345;5357		158.07	58.7	1	33323000			1120	9070	797	797	1176;1177;1178;1179;1180;1181;1182;1183;1184	1179					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.27923583984375	2	464.279118	926.543683	-1.6618	-0.00077153	0.96577	0.00044839	-0.69601	-0.00032314	464.2795676442103	51.871	1.8781	51.602	50.634	52.513	-0.26903					152	49	6	0	0	0	0.015752	9	5343	5286;5296;5308;5320;5332;5343;5355;5367;5380		158.07	57.401	1	31385000			1121	9070	797	797	1185;1186;1187;1188;1189;1190;1191;1192;1193	1190					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.2791442871094	2	464.279118	926.543683	0.59059	0.0002742	-1.2942	-0.00060086	-0.7036	-0.00032667	464.2785401979872	51.765	1.605	51.581	50.83	52.435	-0.18405					119	41	4	0	0	0	0.013337	9	5337	5278;5292;5302;5313;5325;5337;5350;5362;5374		185.55	86.175	1	29248000			1122	9070	797	797	1194;1195;1196;1197;1198;1199;1200;1201;1202	1199					0.07747242074333371
AIVDKVSSV	9	Unmodified	_AIVDKVSSV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MSMS	OPSCC_39_ClassI_Rep-1	1	459.27130126953125	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.452	1	43.452	42.952	43.952	0								0	0	0	0.29239	1	4073	4073		68.846	0.059317	1				1123	6690	798	798	1203	1203					0.06134651694674176
AIVDKVSSV	9	Unmodified	_AIVDKVSSV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MSMS	OPSCC_39_ClassI_Rep-3	3	459.2708740234375	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.497	1	43.528	43.028	44.028	0.030827								0	0	0	0.15405	1	4021	4021		80.455	14.025	1				1124	6690	798	798	1204	1204					0.06134651694674176
AIVEQLKAD	9	Unmodified	_AIVEQLKAD_					0	0	0			REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF	REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.77947998046875	2	493.779482	985.544411	-0.97175	-0.00047983	1.2487	0.00061657	0.27692	0.00013674	493.78000861403234	57.592	0.72339	57.414	56.991	57.714	-0.17775					31	18	2	0	0	0	0.37611	1	6277	6277		67.494	5.3863	1	2839700	+		1125	21164	799	799	1205	1205					0.05106036723384477
AIVFDPNVK	9	Unmodified	_AIVFDPNVK_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.78472900390625	2	501.784567	1001.55458	0.094063	4.72E-05	-0.99059	-0.00049706	-0.89653	-0.00044986	501.78390903724653	72.289	1.0114	72.012	71.745	72.756	-0.2769					47	23	3	0	0	0	0.4752	1	8480	8480		60.972	2.19	1	3877700	+		1126	27541	800	800	1206	1206					0.05386644448617517
AIVISCGYKIS	11	Carbamidomethyl (C)	_AIVISC(Carbamidomethyl (C))GYKIS_	AIVISC(1)GYKIS		AIVISC(52)GYKIS		0	1	0		ENSG00000174417|ENST00000518632|TRHR	ENSG00000174417|ENST00000518632|TRHR	ENSG00000174417|ENST00000518632|TRHR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.2229919433594	3	404.221525	1209.64274	4.6441	0.0018773	-1.3335	-0.00053902	3.3107	0.0013382	404.2209470690282	17.574	1.8203	17.574	17.102	18.922	0					65	36	4	0	0	0	0.90172	1	192	192		51.528	10.448	1	699660			1127	8464	801	801	1207	1207	105				0.046308969769143005
AIVKAGITI	9	Unmodified	_AIVKAGITI_					0	0	0		ENSG00000112115|ENST00000648244|IL17A	ENSG00000112115|ENST00000648244|IL17A	ENSG00000112115|ENST00000648244|IL17A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.7530822753906	2	443.292028	884.569503	0.82806	0.00036707	-0.99214	-0.00043981	-0.16408	-7.2737E-05	443.29151559992295	58.973	0.43399	58.973	58.823	59.257	0					18	11	3	0	0	0	0.024457	1	6719	6719		37.159	3.6435	1	102210			1128	3171	802	802	1208	1208					0.12260136316615444
AIVLDQISL	9	Unmodified	_AIVLDQISL_					0	0	0			REV__ENSG00000189181|ENST00000342623|OR14I1	REV__ENSG00000189181|ENST00000342623|OR14I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.80303955078125	2	486.292225	970.569897	0.17904	8.7067E-05	-1.8483	-0.0008988	-1.6692	-0.00081174	486.29122508174385	87.798	0.91195	87.798	87.728	88.64	0					26	21	2	0	0	0	0.02435	1	11172	11172		42.396	0	1	257830	+		1129	28105	803	803	1209	1209					0.08343511245811897
AIVLTVIPG	9	Unmodified	_AIVLTVIPG_					0	0	0		ENST00000446965.2_1_5:120022111-120022168:+|nuORF	ENST00000446965.2_1_5:120022111-120022168:+|nuORF	ENST00000446965.2_1_5:120022111-120022168:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7877502441406	2	441.786579	881.558604	-0.30922	-0.00013661	3.3597	0.0014843	3.0505	0.0013477	441.78798563803605	43.02	2.2928	43.02	42.786	45.079	0					149	64	5	0	0	0	0.88411	1	4053	4053		33.516	0	1	23586000			1130	14461	804	804	1210	1210					0.11308733942337312
AIVLTVIPG	9	Unmodified	_AIVLTVIPG_					0	0	0		ENST00000446965.2_1_5:120022111-120022168:+|nuORF	ENST00000446965.2_1_5:120022111-120022168:+|nuORF	ENST00000446965.2_1_5:120022111-120022168:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7878723144531	2	441.786579	881.558604	-0.5192	-0.00022937	3.5225	0.0015562	3.0033	0.0013268	441.7880387330216	43.278	2.1204	43.041	42.8	44.92	-0.23736					124	56	5	0	0	0	0.88411	2	3939	3939;3963		33.516	0	1	15366000			1131	14461	804	804	1211;1212	1211					0.11308733942337312
AIVRSLPSV	9	Unmodified	_AIVRSLPSV_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2924499511719	2	471.292559	940.570566	0.085118	4.0115E-05	-0.73592	-0.00034683	-0.6508	-0.00030672	471.29199035975813	52.856	0.73252	52.856	52.391	53.124	0					49	18	4	0	0	0	0.10174	2	5681	5681;5698		110.12	24.76	1	2809000			1132	8466;9848	805	805	1213;1214	1213					0.09790350685534577
AIVRSLPSV	9	Unmodified	_AIVRSLPSV_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2925720214844	2	471.292559	940.570566	0.29171	0.00013748	-0.78695	-0.00037088	-0.49524	-0.0002334	471.2919329673939	52.963	1.0748	52.816	52.021	53.096	-0.14723					59	27	4	0	0	0	0.15366	1	5673	5673		98.629	4.623	1	2984000			1133	8466;9848	805	805	1215	1215					0.09790350685534577
AIVRSLPSV	9	Unmodified	_AIVRSLPSV_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2933044433594	2	471.292559	940.570566	0.63981	0.00030154	-1.2868	-0.00060646	-0.64699	-0.00030492	471.2916849710181	52.715	0.88383	52.807	52.24	53.123	0.091938					54	22	4	0	0	0	0.10174	1	5593	5593		110.12	11.49	1	3449900			1134	8466;9848	805	805	1216	1216					0.09790350685534577
AIVSMSTTTW	10	Unmodified	_AIVSMSTTTW_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.8225708007812	2	548.7708	1095.52705	0.17547	9.6294E-05	-1.5163	-0.00083208	-1.3408	-0.00073579	548.7696513697774	57.078	0.36317	56.876	56.633	56.996	-0.20209					16	9	2	0	0	0	0.03519	1	6221	6221		35.618	10.044	1	293480			1135	9025	806	806	1217	1217					-0.01689626873940142
AIVSNKTT	8	Unmodified	_AIVSNKTT_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|214|3|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|214|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.2392883300781	2	417.239993	832.465432	0.76123	0.00031762	-2.7213	-0.0011354	-1.9601	-0.00081782	417.23876862554744	87.737	1.3193	87.737	87.321	88.64	0					55	31	2	0	0	0	0.96769	1	11063	11063		42.396	5.9494	1	3074400	+		1136	36254	807	807	1218	1218					0.04249809489101608
AIVSNKTT	8	Unmodified	_AIVSNKTT_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|214|3|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|214|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.2392883300781	2	417.239993	832.465432	-0.34005	-0.00014188	-1.5712	-0.00065558	-1.9113	-0.00079746	417.2392593971876	87.93	0.84181	87.751	87.405	88.247	-0.17875					38	20	2	0	0	0	1.0365	1	10701	10701		31.53	2.3803	1	2391200	+		1137	36254	807	807	1219	1219					0.04249809489101608
AIVSSVDKIP	10	Unmodified	_AIVSSVDKIP_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.8151245117188	2	514.802957	1027.59136	-0.91086	-0.00046891	1.4584	0.00075079	0.54755	0.00028188	514.8035042170841	44.655	0.60887	44.444	44.184	44.793	-0.21109					27	13	3	0	0	0	0.03519	1	4206	4206		34.173	14.813	1	484840			1138	5429	808	808	1220	1220					0.0786689627452688
AIVTGYFL	8	Unmodified	_AIVTGYFL_					0	0	0			REV__ENSG00000165204|ENST00000277309|OR1K1	REV__ENSG00000165204|ENST00000277309|OR1K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.76123046875	2	442.249829	882.485105	-0.40534	-0.00017926	0.65853	0.00029124	0.25319	0.00011197	442.24893032280914	38.849	0.18068	38.849	38.721	38.902	0					6	4	2	0	0	0	0.027866	1	3292	3292		35.201	26.378	1	93364	+		1139	25858	809	809	1221	1221					0.03916185499861058
AIVTGYFL	8	Unmodified	_AIVTGYFL_					0	0	0			REV__ENSG00000165204|ENST00000277309|OR1K1	REV__ENSG00000165204|ENST00000277309|OR1K1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.249829	882.485105	-0.68395	-0.00030247	-4.2149	-0.001864	-4.8988	-0.0021665	442.2483147309138	39.085	0.46285	38.862	38.686	39.149	-0.22311	0.045795	-0.00051107	NaN	35.201	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209140	+		1140	25858	809	809							0.03916185499861058
AIVTGYFL	8	Unmodified	_AIVTGYFL_					0	0	0			REV__ENSG00000165204|ENST00000277309|OR1K1	REV__ENSG00000165204|ENST00000277309|OR1K1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.249829	882.485105	0.25272	0.00011176	-4.5511	-0.0020127	-4.2984	-0.0019009	442.24767247458465	39.025	0.49615	38.799	38.6	39.096	-0.2257	-0.016812	-0.00080844	NaN	35.201	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383590	+		1141	25858	809	809							0.03916185499861058
AIVTVSQLL	9	Unmodified	_AIVTVSQLL_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2947998046875	2	472.294768	942.574983	-0.18971	-8.9598E-05	0.62612	0.00029571	0.43641	0.00020611	472.2949144411543	58.135	1.2252	57.96	57.723	58.948	-0.1749					71	33	4	0	0	0	0.15889	1	6524	6524		97.473	1.2823	1	6881300			1142	5771	810	810	1222	1222					0.10139815108436778
AIVTYVSCD	9	Unmodified	_AIVTYVSCD_					0	0	0		ENSG00000166676|ENST00000299866|TVP23A	ENSG00000166676|ENST00000299866|TVP23A	ENSG00000166676|ENST00000299866|TVP23A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2554626464844	2	485.731143	969.447733	-0.54609	-0.00026525	1.3566	0.00065893	0.81049	0.00039368	485.7314005336032	60.928	1.0887	60.674	60.132	61.221	-0.25373					30	26	2	0	0	0	0.024466	1	6801	6801		12.207	0	1	121110			1143	7593	811	811	1223	1223					-0.03821273828066296
AIVVEETTI	9	Unmodified	_AIVVEETTI_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MSMS	OPSCC_39_ClassI_Rep-1	1	487.7729187011719	2	487.773865	973.533177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.633	1	85.633	85.133	86.133	0								0	0	0	0.21697	1	10745	10745		73.975	10.668	1		+		1144	28289	812	812	1224	1224					0.04535214629231632
AIVVEETTI	9	Unmodified	_AIVVEETTI_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.77264404296875	2	487.773865	973.533177	-0.30594	-0.00014923	1.1013	0.00053717	0.79532	0.00038794	487.7743254816327	85.655	0.45175	85.597	85.355	85.807	-0.057617					28	10	3	0	0	0	0.31247	1	10709	10709		73.975	2.679	1	2297300	+		1145	28289	812	812	1225	1225					0.04535214629231632
AIVVEETTI	9	Unmodified	_AIVVEETTI_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7720031738281	2	487.773865	973.533177	0.77159	0.00037636	-0.76823	-0.00037472	0.0033532	1.6356E-06	487.7733824151196	85.689	1.5032	85.539	85.201	86.704	-0.14967					66	34	3	0	0	0	0.80658	1	10379	10379		38.806	0	1	2491300	+		1146	28289	812	812	1226	1226					0.04535214629231632
AIVVQKNLP	9	Unmodified	_AIVVQKNLP_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2920837402344	2	491.30821	980.601866	0.69896	0.00034341	-0.79757	-0.00039185	-0.098609	-4.8447E-05	491.3077974837436	70.377	0.44676	70.377	70.166	70.613	0					15	11	2	0	0	0	0.024541	1	8525	8525		24.203	6.8378	1	484390	+		1147	24228	813	813	1227	1227					0.11078923719617251
AIVYSIQNL	9	Unmodified	_AIVYSIQNL_					0	0	0		ENST00000553038.5_1_12:100606046-100635559:+|nuORF;ACTR6|p.K315*|1|0.24|ENSG00000075089|chr12:100220020-100220021|-/T|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6	ENST00000553038.5_1_12:100606046-100635559:+|nuORF	ENST00000553038.5_1_12:100606046-100635559:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7890930175781	2	510.78985	1019.56515	0.4785	0.00024441	-0.92375	-0.00047184	-0.44525	-0.00022743	510.78935221763095	82.198	1.6393	81.977	81.616	83.256	-0.22016					107	37	4	0	0	0	0.15366	1	9929	9929		98.629	8.2596	1	6157300			1148	21	814	814	1228	1228					0.056146271030456774
AIVYSIQNL	9	Unmodified	_AIVYSIQNL_					0	0	0		ENST00000553038.5_1_12:100606046-100635559:+|nuORF;ACTR6|p.K315*|1|0.24|ENSG00000075089|chr12:100220020-100220021|-/T|frameshift_variant;ENSG00000075089|ENST00000188312|ACTR6	ENST00000553038.5_1_12:100606046-100635559:+|nuORF	ENST00000553038.5_1_12:100606046-100635559:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7898254394531	2	510.78985	1019.56515	-0.0022934	-1.1714E-06	-0.51482	-0.00026296	-0.51711	-0.00026414	510.7895496279766	82.187	1.6273	82.006	81.689	83.316	-0.18079					116	37	4	0	0	0	0.15366	1	9949	9949		98.629	2.4389	1	5499900			1149	21	814	814	1229	1229					0.056146271030456774
AIWPKKTN	8	Unmodified	_AIWPKKTN_					0	0	0			REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2783203125	2	479.279452	956.544351	-0.48842	-0.00023409	-0.73159	-0.00035064	-1.22	-0.00058473	479.2796754108199	81.053	2.622	80.922	79.525	82.147	-0.13075					131	63	4	0	0	0	0.97924	1	10093	10093		40.573	4.9543	1	1507900	+		1150	36668	815	815	1230	1230					0.06434081514032641
AIWRIVAE	8	Unmodified	_AIWRIVAE_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MSMS	OPSCC_39_ClassI_Rep-1	1	479.2774353027344	2	479.279452	956.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.308	1	86.308	85.808	86.808	0								0	0	0	0.78881	1	10841	10841		35.201	1.6851	1		+		1151	29116	816	816	1231	1231					0.06434081514032641
AIYGNEPEI	9	Unmodified	_AIYGNEPEI_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2481689453125	2	503.248015	1004.48148	-0.39601	-0.00019929	0.067503	3.3971E-05	-0.32851	-0.00016532	503.2479306658228	60.883	1.6427	60.883	60.401	62.044	0					121	43	4	0	0	0	0.015901	5	7022	7022;7035;7047;7061;7084		157.33	52.582	1	5954200			1152	3628;15578	817	817	1232;1233;1234;1235;1236	1232					-0.020585290646749854
AIYGNEPEI	9	Unmodified	_AIYGNEPEI_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.2476806640625	2	503.248015	1004.48148	-0.35538	-0.00017884	0.070231	3.5344E-05	-0.28514	-0.0001435	503.2479436229851	61.126	1.6417	60.913	60.421	62.062	-0.2134					125	43	4	0	0	0	0.043667	4	7040	7003;7012;7040;7069		131.03	46.116	1	5535900			1153	3628;15578	817	817	1237;1238;1239;1240	1239					-0.020585290646749854
AIYGNEPEI	9	Unmodified	_AIYGNEPEI_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.2483215332031	2	503.248015	1004.48148	-0.66885	-0.0003366	0.38897	0.00019575	-0.27988	-0.00014085	503.2480939127837	60.758	1.6064	60.834	60.389	61.995	0.075275					126	42	4	0	0	0	0.077175	4	6927	6906;6914;6927;6953		118.74	52.314	1	5395600			1154	3628;15578	817	817	1241;1242;1243;1244	1243					-0.020585290646749854
AIYGSSHSW	9	Unmodified	_AIYGSSHSW_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.2315368652344	2	504.232699	1006.45084	-0.84659	-0.00042688	0.12255	6.1795E-05	-0.72404	-0.00036508	504.2326672940965	44.577	0.73366	44.472	44.203	44.937	-0.10468					41	18	3	0	0	0	0.11848	2	4165	4165;4177		106.42	43.109	1	1396600			1155	5169	818	818	1245;1246	1245					-0.05212262659051703
AIYGSSHSW	9	Unmodified	_AIYGSSHSW_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.23223876953125	2	504.232699	1006.45084	-0.79687	-0.00040181	0.10793	5.4424E-05	-0.68894	-0.00034739	504.2326230937057	44.78	0.73672	44.528	44.282	45.019	-0.25252					42	18	3	0	0	0	0.22754	1	4195	4195		85.359	28.638	1	1595300			1156	5169	818	818	1247	1247					-0.05212262659051703
AIYGSSHSW	9	Unmodified	_AIYGSSHSW_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.232177734375	2	504.232699	1006.45084	-1.0071	-0.0005078	0.36096	0.00018201	-0.64611	-0.00032579	504.23275131825943	44.785	0.82867	44.574	44.292	45.121	-0.21109					50	21	4	0	0	0	0.040175	1	4192	4192		133.47	51.164	1	1388000			1157	5169	818	818	1248	1248					-0.05212262659051703
AIYISDEV	8	Unmodified	_AIYISDEV_					0	0	0			REV__ENSG00000244462|ENST00000374114|RBM12	REV__ENSG00000244462|ENST00000374114|RBM12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.74566650390625	2	455.231833	908.449113	0.5686	0.00025885	2.54	0.0011563	3.1086	0.0014151	455.23274646381645	53.772	0.63348	53.772	53.545	54.179	0					20	17	2	0	0	0	0.027866	1	5903	5903		37.028	1.8278	1	88924	+		1158	28998	819	819	1249	1249					-0.008773164676654233
AIYPEPFLI	9	Unmodified	_AIYPEPFLI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7969360351562	2	531.797143	1061.57973	-0.49616	-0.00026386	-0.041654	-2.2151E-05	-0.53782	-0.00028601	531.7971082035251	93.867	1.9628	93.867	93.429	95.392	0					135	46	5	0	0	0	0.013308	5	11949	11913;11925;11937;11949;11962		170.31	78.123	1	15624000			1159	18451	820	820	1250;1251;1252;1253;1254	1253					0.05140699251182923
AIYPEPFLI	9	Unmodified	_AIYPEPFLI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7972412109375	2	531.797143	1061.57973	-0.75245	-0.00040015	0.26628	0.00014161	-0.48617	-0.00025854	531.7972670828611	93.795	2.0135	93.794	93.371	95.384	-0.0016403					133	47	5	0	0	0	0.016588	5	11884	11873;11884;11896;11908;11922		153.88	78.841	1	15270000			1160	18451	820	820	1255;1256;1257;1258;1259	1256					0.05140699251182923
AIYPEPFLI	9	Unmodified	_AIYPEPFLI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7971801757812	2	531.797143	1061.57973	-0.81544	-0.00043365	0.38287	0.00020361	-0.43257	-0.00023004	531.7972994098036	93.851	1.9661	93.857	93.433	95.399	0.0059814					135	46	5	0	0	0	0.013308	5	11855	11833;11843;11855;11867;11880		170.31	87.027	1	16834000			1161	18451	820	820	1260;1261;1262;1263;1264	1262					0.05140699251182923
AKAAARGRAAL	11	Unmodified	_AKAAARGRAAL_					0	0	0		nc|ENSG00000288550|Q8NAC3-7|IL17RC;nc|ENSG00000288550|Q8NAC3-8|IL17RC;nc|ENSG00000288550|Q8NAC3-5|IL17RC;ENST00000451271.5_1_3:9958923-9975274:+|nuORF;ENST00000497387.5_1_3:9971427-9975274:+|nuORF	nc|ENSG00000288550|Q8NAC3-7|IL17RC;ENST00000497387.5_1_3:9971427-9975274:+|nuORF	nc|ENSG00000288550|Q8NAC3-7|IL17RC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3264770507812	2	528.325257	1054.63596	-0.18479	-9.7631E-05	2.2909	0.0012103	2.1061	0.0011127	528.3263591515353	66.006	1.2828	66.006	65.643	66.926	0					76	36	5	0	0	0	0.56861	1	7827	7827		71.877	3.0313	1	8288100			1162	18818;15591	821	821	1265	1265					0.11082764931234124
AKAAGRRRW	9	Unmodified	_AKAAGRRRW_					0	0	0			REV__nc|ENSG00000157388|Q01668-2|CACNA1D	REV__nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.317138671875	2	536.317766	1070.62098	0.030907	1.6576E-05	4.0978	0.0021977	4.1287	0.0022143	536.3169900435802	21.036	1.2754	20.84	20.187	21.462	-0.19577					43	25	3	0	0	0	0.78069	1	601	601		40.573	8.6178	1	601840	+		1163	36811	822	822	1266	1266					0.08849317853901084
AKAARPPWE	9	Unmodified	_AKAARPPWE_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.279296875	2	513.279983	1024.54541	-0.21204	-0.00010883	-0.085112	-4.3686E-05	-0.29715	-0.00015252	513.2799023200329	43.057	1.1968	42.917	42.448	43.645	-0.13929					87	32	4	0	0	0	0.28753	1	3983	3983		77.318	5.4401	1	3000700			1164	3284	823	823	1267	1267					0.03412295882935723
AKAARPPWE	9	Unmodified	_AKAARPPWE_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.279983	1024.54541	-0.45334	-0.00023269	0.04926	2.5284E-05	-0.40408	-0.00020741	513.2800131067162	42.854	0.97817	42.854	42.497	43.475	0	-0.06438	0.0002068	NaN	77.318	80	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2720500			1165	3284	823	823							0.03412295882935723
AKAGAEKLAK	10	Unmodified	_AKAGAEKLAK_					0	0	0			REV__CCDC57|p.E215K|1|0.15|ENSG00000176155|chr17:82194115-82194115|C/T|missense_variant	REV__CCDC57|p.E215K|1|0.15|ENSG00000176155|chr17:82194115-82194115|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.8033752441406	2	493.803291	985.59203	1.6915	0.00083526	-2.0485	-0.0010116	-0.35704	-0.00017631	493.8022022343365	23.294	0.76568	23.103	22.851	23.616	-0.19117					41	17	4	0	0	0	0.96822	1	870	870		49.536	5.4192	1	2247500	+		1166	19258	824	824	1268	1268					0.09865735714231505
AKAKGSDKGAK	11	Unmodified	_AKAKGSDKGAK_					0	0	0			REV__nc|ENSG00000105968|Q71UI9-5|H2AZ2	REV__nc|ENSG00000105968|Q71UI9-5|H2AZ2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8095092773438	2	530.809105	1059.60366	4.1628	0.0022096	-3.1888	-0.0016926	0.97399	0.000517	530.8074248563545	17.696	0.93689	17.446	17.23	18.167	-0.25049					48	18	5	0	0	0	1.0465	1	201	201		26.063	1.5442	1	1780600	+		1167	21581	825	825	1269	1269					0.07623932737533323
AKAKQKAKV	9	Unmodified	_AKAKQKAKV_					0	0	0			REV__ENSG00000272899|ENST00000609480|ATP6V1FNB	REV__ENSG00000272899|ENST00000609480|ATP6V1FNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2920227050781	2	486.321651	970.62875	-0.48456	-0.00023565	3.2009	0.0015567	2.7163	0.001321	486.32305604850075	81.918	0.48306	81.918	81.63	82.113	0					22	11	3	0	0	0	0.024323	1	10244	10244		63.306	29.134	1	229430	+		1168	29172	826	826	1270	1270					0.14226032330793714
AKAKSKTKL	9	Unmodified	_AKAKSKTKL_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7976379394531	2	487.821484	973.628415	-0.06081	-2.9664E-05	-2.196	-0.0010713	-2.2568	-0.0011009	487.81961551947404	50.285	0.12617	50.134	50.065	50.191	-0.1512					5	3	2	0	0	0	0.024541	1	5234	5234		10.265	0	1	61963			1169	9743	827	827	1271	1271					0.14054612610925687
AKALEMGVFG	10	Unmodified	_AKALEMGVFG_					0	0	0		ENSG00000160282|ENST00000397746|FTCD;nc|ENSG00000160282|O95954-2|FTCD	ENSG00000160282|ENST00000397746|FTCD	ENSG00000160282|ENST00000397746|FTCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.3073425292969	2	511.770603	1021.52665	-0.58548	-0.00029963	3.5396	0.0018115	2.9541	0.0015118	511.7715212771293	22.562	0.14082	22.562	22.479	22.619	0					4	2	2	0	0	0	0.03519	1	805	805		40.778	0	1	9130			1170	6800	828	828	1272	1272					0.016749981968928296
AKALLGESH	9	Unmodified	_AKALLGESH_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	2	463.258717	924.50288	0.5991	0.00027754	-0.93069	-0.00043115	-0.33159	-0.00015361	463.25806537970226	41.31	0.97721	41.333	41.076	42.053	0.023006					35	27	2	0	0	0	0.024405	1	3738	3738		44.117	34.934	1	402780	+		1171	36519	829	829	1273	1273					0.03760900754718932
AKASTEFFR	9	Unmodified	_AKASTEFFR_					0	0	0			REV__ENSG00000084733|ENST00000264710|RAB10	REV__ENSG00000084733|ENST00000264710|RAB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7788696289062	2	528.777274	1055.53999	5.0563	0.0026737	-1.8212	-0.000963	3.2352	0.0017107	528.7761343111431	17.2	0.34443	16.949	16.835	17.179	-0.25049					10	6	3	0	0	0	0.93097	1	138	138		30.318	2.4355	1	87703	+		1172	20740	830	830	1274	1274					0.01444572300465552
AKAVQGLTEP	10	Unmodified	_AKAVQGLTEP_					0	0	0			REV__TTI2|p.A295Cfs*46|1|0.4|ENSG00000129696|chr8:33507273-33507274|-/A|frameshift_variant	REV__TTI2|p.A295Cfs*46|1|0.4|ENSG00000129696|chr8:33507273-33507274|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.30047607421875	2	507.284931	1012.55531	-0.12549	-6.3657E-05	4.4727	0.002269	4.3473	0.0022053	507.2871877134846	32.506	0.414	32.569	32.352	32.766	0.062885					19	10	2	0	0	0	0.03519	1	2190	2190		69.628	10.846	1	565880	+		1173	23062	831	831	1275	1275					0.04953439097664614
AKCRLLLTL	9	Unmodified	_AKCRLLLTL_					0	0	0		ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	ENST00000405260.5_1_2:242082421-242089560:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7892456054688	2	515.825712	1029.63687	-1.1942	-0.00061602	-2.4103	-0.0012433	-3.6045	-0.0018593	515.8241920594204	51.908	0.42788	52	51.894	52.321	0.091942					15	10	2	0	0	0	0.024523	1	5509	5509		29.15	0	1	79032			1174	13712	832	832	1276	1276					0.12323843255899192
AKDFVVKVI	9	Unmodified	_AKDFVVKVI_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.27105712890625	2	509.81841	1017.62227	0.32307	0.00016471	-1.0251	-0.00052262	-0.70205	-0.00035792	509.81762602334857	49.95	0.48553	49.77	49.57	50.055	-0.18071					21	12	2	0	0	0	0.024367	1	5079	5079		36.447	0	1	413530			1175	5538	833	833	1277	1277					0.11416094379421793
AKDIRKLL	8	Unmodified	_AKDIRKLL_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	478.816202	955.617851	-0.58385	-0.00027956	0.29285	0.00014022	-0.291	-0.00013934	478.8162410328882	28.606	0.51565	28.437	28.254	28.769	-0.16897					16	11	2	0	0	0	0.027866	1	1693	1693		17.365	13.38	1	45267			1176	16486	834	834	1278	1278					0.13826629956508896
AKDIRKLL	8	Unmodified	_AKDIRKLL_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.816202	955.617851	-1.0562	-0.00050571	0.80249	0.00038424	-0.25369	-0.00012147	478.81656504477917	28.731	0.47132	28.486	28.281	28.753	-0.24524	0.024449	0.00023778	NaN	17.365	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50404			1177	16486	834	834							0.13826629956508896
AKDISMISIL	10	Unmodified	_AKDISMISIL_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2899780273438	2	545.812467	1089.61038	-0.76726	-0.00041878	0.26607	0.00014522	-0.50119	-0.00027355	545.8122268786972	97.042	0.44448	97.042	96.881	97.325	0					10	9	2	0	0	0	0.03519	1	12416	12416		87.696	24.39	1	38158	+		1178	27198	835	835	1279	1279					0.06916109573944595
AKDKYVRS	8	Unmodified	_AKDKYVRS_					0	0	0		nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	nc|ENSG00000182511|P07332-2|FES	nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2378845214844	2	483.771991	965.529429	-0.37237	-0.00018014	-2.8667	-0.0013868	-3.2391	-0.001567	483.76986872043466	40.599	0.71416	40.45	40.294	41.008	-0.1497					29	18	3	0	0	0	0.027866	1	3610	3610		35.618	18.253	1	455040			1179	9142	836	836	1280	1280					0.045285896460427466
AKDKYVRS	8	Unmodified	_AKDKYVRS_					0	0	0		nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	nc|ENSG00000182511|P07332-2|FES	nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2375793457031	2	483.771991	965.529429	-1.0096	-0.00048841	-3.9528	-0.0019123	-4.9624	-0.0024007	483.76947001434615	40.824	0.5496	40.594	40.414	40.964	-0.23029					29	14	3	0	0	0	0.027866	1	3579	3579		35.618	11.416	1	684700			1180	9142	836	836	1281	1281					0.045285896460427466
AKDMHRIL	8	Unmodified	_AKDMHRIL_					0	0	0		ENSG00000196228|ENST00000681802|SULT1C3;nc|ENSG00000196228|Q6IMI6|SULT1C3	ENSG00000196228|ENST00000681802|SULT1C3;nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.8197326660156	2	492.276386	982.53822	3.4743	0.0017103	-0.28179	-0.00013872	3.1925	0.0015716	492.27599625758904	18.744	0.24486	18.807	18.649	18.893	0.063307					6	4	2	0	0	0	0.027866	1	278	278		30.504	11.144	1	21553			1181	9839;18619	837	837	1282	1282					0.04625240010864218
AKEEPELAD	9	Unmodified	_AKEEPELAD_					0	0	0			REV__ENSG00000079616|ENST00000160827|KIF22	REV__ENSG00000079616|ENST00000160827|KIF22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.292236328125	2	501.242929	1000.47131	-0.78391	-0.00039293	2.399	0.0012025	1.6151	0.00080958	501.24455379604325	57.462	0.25438	57.228	57.095	57.349	-0.23363					10	6	2	0	0	0	0.023817	1	6249	6249		42.396	0	1	165640	+		1182	20641	838	838	1283	1283					-0.028911367899013385
AKEEQKGL	8	Unmodified	_AKEEQKGL_					0	0	0		nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2540588378906	2	451.750724	901.486896	-0.3767	-0.00017017	0.19226	8.6853E-05	-0.18444	-8.3322E-05	451.7507308749499	36.499	0.48189	36.457	36.208	36.69	-0.042454					26	12	3	0	0	0	0.027866	1	2921	2921		25.45	4.5032	1	668810			1183	965	839	839	1284	1284					0.03221194517800541
AKEERKRFKKQ	11	Unmodified	_AKEERKRFKKQ_					0	0	0			REV__ENSG00000148296|ENST00000372022|SURF6	REV__ENSG00000148296|ENST00000372022|SURF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.23736572265625	3	483.28792	1446.84193	-0.37073	-0.00017917	1.3516	0.00065319	0.98083	0.00047402	483.28925440848946	40.4	0.39632	40.25	40.078	40.474	-0.1497					11	10	2	0	0	0	0.024856	1	3532	3532		5.6988	2.6728	1	1109700	+		1184	24604	840	840	1285	1285					0.13638293319809236
AKEGLFLTIK	10	Unmodified	_AKEGLFLTIK_					0	0	0			REV__ENST00000380680.4_1_13:30423667-30423889:-|nuORF	REV__ENST00000380680.4_1_13:30423667-30423889:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.2882080078125	2	560.342249	1118.66995	-0.79064	-0.00044303	0.73003	0.00040907	-0.060609	-3.3962E-05	560.342754019696	51.57	0.27521	51.293	51.078	51.353	-0.27643					8	6	2	0	0	0	0.03519	1	5266	5266		25.574	0	1	100020	+		1185	31491	841	841	1286	1286					0.11535748579581195
AKERKLAE	8	Unmodified	_AKERKLAE_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5;REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.77880859375	2	472.779816	943.545079	0.18691	8.8369E-05	-0.57837	-0.00027344	-0.39145	-0.00018507	472.7794193859273	23.786	0.68643	23.786	23.523	24.209	0					28	15	2	0	0	0	0.027866	1	957	957		54.776	0	1	811020	+		1186	23795;25046	842	842	1287	1287					0.07104876163089102
AKEVTKAS	8	Unmodified	_AKEVTKAS_					0	0	0		ENST00000475491.1_1_2:95963129-95976459:+|nuORF;nc|ENSG00000115041|Q9Y2W7-2|KCNIP3;ENSG00000115041|ENST00000295225|KCNIP3	ENST00000475491.1_1_2:95963129-95976459:+|nuORF	ENST00000475491.1_1_2:95963129-95976459:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.23919677734375	2	417.239993	832.465432	0.76123	0.00031762	-2.7213	-0.0011354	-1.9601	-0.00081782	417.23876862554744	87.737	1.3193	87.737	87.321	88.64	0					55	31	2	0	0	0	0.98759	1	11039	11039		39.253	8.9351	1	3074400			1187	3404	843	843	1288	1288					0.04249809489101608
AKFHAEKV	8	Unmodified	_AKFHAEKV_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.26739501953125	2	465.263802	928.513051	0.094171	4.3814E-05	0.29221	0.00013595	0.38638	0.00017977	465.26420994809365	58.322	0.91358	58.322	57.91	58.823	0					85	24	5	0	0	0	0.87148	1	6651	6651		53.351	8.9743	1	25177000	+		1188	20637	844	844	1289	1289					0.04593508479945285
AKFHAEKV	8	Unmodified	_AKFHAEKV_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.26788330078125	2	465.263802	928.513051	0.6445	0.00029986	-0.16395	-7.6282E-05	0.48055	0.00022358	465.26401364326546	58.15	0.98288	58.241	57.872	58.855	0.091217					78	26	5	0	0	0	0.80469	1	6562	6562		58.782	0	1	26869000	+		1189	20637	844	844	1290	1290					0.04593508479945285
AKFHSRFP	8	Unmodified	_AKFHSRFP_					0	0	0		ENST00000569981.2_1_16:29820228-29821657:-|nuORF	ENST00000569981.2_1_16:29820228-29821657:-|nuORF	ENST00000569981.2_1_16:29820228-29821657:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28265380859375	2	495.269419	988.524284	-0.9545	-0.00047274	2.7289	0.0013516	1.7744	0.00087883	495.27068300468716	39.819	1.0202	39.707	39.398	40.418	-0.11223					43	27	2	0	0	0	0.027866	1	3461	3461		12.207	0	1	1962000			1190	17015	845	845	1291	1291					0.029563305740907708
AKFSFGRGL	9	Unmodified	_AKFSFGRGL_					0	0	0			REV__ENST00000592982.2_1_19:33793839-33794019:+|nuORF	REV__ENST00000592982.2_1_19:33793839-33794019:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2908630371094	2	491.777077	981.5396	-0.037094	-1.8242E-05	-4.2224	-0.0020765	-4.2595	-0.0020947	491.77494401479726	19.894	1.1462	19.894	19.463	20.609	0					31	23	2	0	0	0	0.024427	1	510	510		26.693	2.4902	1	85748	+		1191	35758	846	846	1292	1292					0.048091973712985236
AKFSFGRGL	9	Unmodified	_AKFSFGRGL_					0	0	0			REV__ENST00000592982.2_1_19:33793839-33794019:+|nuORF	REV__ENST00000592982.2_1_19:33793839-33794019:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.777077	981.5396	1.5347	0.00075473	-5.5322	-0.0027206	-3.9975	-0.0019659	491.77415541292254	20.061	0.29331	20.129	19.923	20.217	0.068155	0.058849	-0.0014582	NaN	19.997	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13144	+		1192	35758	846	846							0.048091973712985236
AKGDMGLPGLS	11	Oxidation (M)	_AKGDM(Oxidation (M))GLPGLS_		AKGDM(1)GLPGLS		AKGDM(56)GLPGLS	0	0	1		ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2672729492188	2	531.268424	1060.5223	-0.091268	-4.8488E-05	-2.2976	-0.0012206	-2.3889	-0.0012691	531.2670006889718	20.541	0.68412	20.373	20.147	20.832	-0.16774					28	13	4	0	0	0	0.82076	1	559	559		56.434	8.7765	1	690230			1193	9918	847	847	1293	1293		413			-0.005545110166849554
AKGELLEAI	9	Unmodified	_AKGELLEAI_					0	0	0		nc|ENSG00000291237|P04179-2|SOD2	nc|ENSG00000291237|P04179-2|SOD2	nc|ENSG00000291237|P04179-2|SOD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.81024169921875	2	472.276575	942.538597	0.95153	0.00044938	3.2733	0.0015459	4.2248	0.0019953	472.27814564333977	19.594	0.19986	19.394	19.255	19.455	-0.2001					5	3	2	0	0	0	0.024447	1	426	426		40.778	10.275	1	13431			1194	18839	848	848	1294	1294					0.06502938211713172
AKGFWRAVI	9	Unmodified	_AKGFWRAVI_					0	0	0		ENST00000439704.1_1_7:63369621-63370485:-|nuORF	ENST00000439704.1_1_7:63369621-63370485:-|nuORF	ENST00000439704.1_1_7:63369621-63370485:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8157958984375	2	524.308544	1046.60253	-0.26874	-0.0001409	-2.0505	-0.0010751	-2.3192	-0.001216	524.3074340661183	75.148	0.63744	74.904	74.591	75.229	-0.24455					39	15	3	0	0	0	0.024506	1	9132	9132		16.473	0	1	3077900			1195	14337	849	849	1295	1295					0.0810976315933658
AKGKKAVK	8	Unmodified	_AKGKKAVK_					0	0	0			REV__ENSG00000182583|ENST00000688183|VCX	REV__ENSG00000182583|ENST00000688183|VCX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2314758300781	2	415.284537	828.554522	0.05403	2.2438E-05	0.090467	3.757E-05	0.1445	6.0007E-05	415.2844427647789	21.393	0.48767	21.202	20.98	21.468	-0.19072					20	9	3	0	0	0	0.027866	1	664	664		17.365	9.6747	1	163970	+		1196	27493	850	850	1296	1296					0.1333868923927639
AKGKKKLG	8	Unmodified	_AKGKKKLG_					0	0	0			REV__ENST00000296795.7_1_4:186990353-186997774:+|nuORF	REV__ENST00000296795.7_1_4:186990353-186997774:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315368652344	2	415.284537	828.554522	0.14763	6.131E-05	0.0043313	1.7987E-06	0.15196	6.3108E-05	415.28444910415607	21.267	0.38587	21.089	20.87	21.256	-0.17721					17	7	3	0	0	0	0.027866	1	646	646		12.959	4.7279	1	133590	+		1197	30003	851	851	1297	1297					0.1333868923927639
AKGKSEAGKKG	11	Unmodified	_AKGKSEAGKKG_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174253233-174253434:-|nuORF;ENST00000591146.2_1_19:1203384-1203819:+|nuORF	ENSG00000164104|ENST00000296503|HMGB2	ENSG00000164104|ENST00000296503|HMGB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8114013671875	2	530.809105	1059.60366	-0.291	-0.00015447	3.4646	0.001839	3.1736	0.0016846	530.810906180189	61.681	1.0907	61.424	60.927	62.018	-0.25725					59	24	3	0	0	0	0.79085	1	6903	6903		58.246	1.5252	1	1729600			1198	7213	852	852	1298	1298					0.0762393273755606
AKGLGPLAGAA	11	Unmodified	_AKGLGPLAGAA_					0	0	0		nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2765197753906	2	463.276909	924.539266	-1.008	-0.00046699	0.08149	3.7752E-05	-0.92653	-0.00042924	463.27674714400075	37.719	0.7486	37.719	37.45	38.199	0					59	21	4	0	0	0	0.6558	1	3105	3105		66.429	5.4573	1	4516100			1199	18192	853	853	1299	1299					0.07397777651419801
AKGLGPLAGAA	11	Unmodified	_AKGLGPLAGAA_					0	0	0		nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.2765808105469	2	463.276909	924.539266	-0.86001	-0.00039842	0.065107	3.0163E-05	-0.7949	-0.00036826	463.2767561266968	37.638	0.97112	37.573	37.341	38.312	-0.06456					65	27	5	0	0	0	0.49334	1	3088	3088		76.774	5.4784	1	4363900			1200	18192	853	853	1300	1300					0.07397777651419801
AKGLLKEAAL	10	Unmodified	_AKGLLKEAAL_					0	0	0		ENSG00000153820|ENST00000392056|SPHKAP;nc|ENSG00000153820|Q2M3C7-2|SPHKAP;SPHKAP|p.S659Qfs*18|1|0.68|ENSG00000153820|chr2:228018880-228018880|G/-|frameshift_variant	ENSG00000153820|ENST00000392056|SPHKAP	ENSG00000153820|ENST00000392056|SPHKAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3072509765625	2	507.321317	1012.62808	-1.1477	-0.00058226	-0.14322	-7.2657E-05	-1.2909	-0.00065492	507.3208290442906	44.091	0.72048	43.872	43.455	44.176	-0.21939					29	19	2	0	0	0	0.03519	1	4062	4062		54.776	1.4249	1	470330			1201	6360	854	854	1301	1301					0.1222719289107772
AKGMGLGPP	9	Unmodified	_AKGMGLGPP_					0	0	0		ATG4D|p.E170K|1|0.48|ENSG00000130734|chr19:10546853-10546853|G/A|missense_variant	ATG4D|p.E170K|1|0.48|ENSG00000130734|chr19:10546853-10546853|G/A|missense_variant	ATG4D|p.E170K|1|0.48|ENSG00000130734|chr19:10546853-10546853|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.2892150878906	2	414.225831	826.437109	-0.49663	-0.00020572	3.1905	0.0013216	2.6939	0.0011159	414.2273157752426	34.441	0.47897	34.265	33.934	34.413	-0.17557					20	11	3	0	0	0	0.024487	1	2507	2507		17.365	0.89182	1	97140			1202	145	855	855	1302	1302					0.016947883081684267
AKGRLSKLI	9	Unmodified	_AKGRLSKLI_					0	0	0			REV__ENST00000588088.1_1_18:57491253-57491433:+|nuORF	REV__ENST00000588088.1_1_18:57491253-57491433:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.32977294921875	2	493.329476	984.6444	0.44669	0.00022037	-0.61217	-0.000302	-0.16548	-8.1637E-05	493.3290664040318	18.379	0.74051	18.223	18.002	18.742	-0.15637					35	14	4	0	0	0	0.39228	1	290	290		66.429	5.4573	1	651440	+		1203	35641	856	856	1303	1303					0.15146318847837392
AKGTPAKTTF	10	Unmodified	_AKGTPAKTTF_					0	0	0		ENSG00000159261|ENST00000399135|CLDN14	ENSG00000159261|ENST00000399135|CLDN14	ENSG00000159261|ENST00000399135|CLDN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2861633300781	2	511.287474	1020.5604	-0.51407	-0.00026284	-2.5371	-0.0012972	-3.0512	-0.00156	511.2861331183895	27.755	0.93769	27.742	27.427	28.365	-0.012983					64	23	4	0	0	0	0.98754	1	1558	1558		47.657	8.4045	1	2907200			1204	6734	857	857	1304	1304					0.05093742960286818
AKGTYTFDI	9	Unmodified	_AKGTYTFDI_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-2|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8004150390625	2	508.258382	1014.50221	-0.60156	-0.00030575	1.1933	0.00060652	0.59177	0.00030077	508.25848915891737	31.108	0.59016	30.923	30.618	31.208	-0.18503					20	14	2	0	0	0	0.023596	1	2058	2058		53.351	12.779	1	78987			1205	5215	858	858	1305	1305					-0.004459386850044211
AKGVAGAIPAA	11	Unmodified	_AKGVAGAIPAA_					0	0	0		nc|ENSG00000087157|Q32NB8-2|PGS1;ENSG00000087157|ENST00000262764|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	nc|ENSG00000087157|Q32NB8-2|PGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.2762451171875	2	463.276909	924.539266	-0.051122	-2.3684E-05	-0.88144	-0.00040835	-0.93256	-0.00043203	463.2763255673225	37.739	0.8216	37.771	37.413	38.235	0.032269					62	22	4	0	0	0	0.6558	1	3048	3048		66.429	0	1	3895800			1206	1837	859	859	1306	1306					0.07397777651419801
AKGVAQPGQRA	11	Unmodified	_AKGVAQPGQRA_					0	0	0			REV__ZNF628|p.R762Q|1|0.38|ENSG00000197483|chr19:55483478-55483478|G/A|missense_variant	REV__ZNF628|p.R762Q|1|0.38|ENSG00000197483|chr19:55483478-55483478|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.8093872070312	2	541.806897	1081.59924	-1.7114	-0.00092722	3.6588	0.0019823	1.9474	0.0010551	541.8085964491825	29.218	1.4056	29.218	28.53	29.936	0					97	34	5	0	0	0	0.69247	1	1767	1767		64.207	11.271	1	2363200	+		1207	37812	860	860	1307	1307					0.06170468314667232
AKGWGGKL	8	Unmodified	_AKGWGGKL_					0	0	0			REV__ENST00000498500.1_1_1:155165634-155166210:-|nuORF	REV__ENST00000498500.1_1_1:155165634-155166210:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5703430175781	2	408.739963	815.465373	0.77116	0.0003152	-1.4885	-0.00060841	-0.71734	-0.0002932	408.74102102045555	32.257	0.15273	32.32	32.2	32.352	0.062889					5	3	2	0	0	0	0.027866	1	2159	2159		44.531	5.5096	1	21281	+		1208	33882	861	861	1308	1308					0.05025854279756459
AKHLPTFQWLD	11	Unmodified	_AKHLPTFQWLD_					0	0	0			REV__TNKS|p.E441K|1|0.23|ENSG00000173273|chr8:9706862-9706862|G/A|missense_variant	REV__TNKS|p.E441K|1|0.23|ENSG00000173273|chr8:9706862-9706862|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.61981201171875	3	452.575067	1354.70337	-0.095082	-4.3032E-05	0.1407	6.3675E-05	0.045613	2.0643E-05	452.57517180648625	17.995	0.74619	17.789	17.216	17.962	-0.20669					22	14	3	0	0	0	0.024873	1	223	223		9.6461	1.8416	1	80323	+		1209	37715	862	862	1309	1309					0.040207503515148346
AKIAVVEKY	9	Unmodified	_AKIAVVEKY_					0	0	0		nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENSG00000134452|ENST00000362091|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7533264160156	2	510.808042	1019.60153	-0.78741	-0.00040221	3.4722	0.0017736	2.6848	0.0013714	510.80966245568703	45.004	1.033	44.904	44.633	45.666	-0.099449					54	28	3	0	0	0	0.024257	1	4367	4367		77.318	3.0625	1	1963800			1210	4797	863	863	1310	1310					0.09251503999757915
AKIAVVEKY	9	Unmodified	_AKIAVVEKY_					0	0	0		nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENSG00000134452|ENST00000362091|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.808042	1019.60153	-0.47327	-0.00024175	3.3239	0.0016979	2.8507	0.0014561	510.80954555353514	45.226	0.76855	45.015	44.715	45.484	-0.21109	0.040778	2.7581E-05	NaN	77.318	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2141700			1211	4797	863	863							0.09251503999757915
AKIDVGDVI	9	Unmodified	_AKIDVGDVI_					0	0	0		PTPN13|p.G1546A|1|0.06|ENSG00000163629|chr4:86769916-86769916|G/C|missense_variant	PTPN13|p.G1546A|1|0.06|ENSG00000163629|chr4:86769916-86769916|G/C|missense_variant	PTPN13|p.G1546A|1|0.06|ENSG00000163629|chr4:86769916-86769916|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.26875	928.522947	0.18726	8.7128E-05	1.7638	0.00082066	1.9511	0.00090779	465.2685816578189	75.047	1.0678	74.789	74.071	75.139	-0.25887					53	25	4	0	0	0	0.024466	1	9209	9209		31.53	0	1	351580			1212	19005	864	864	1311	1311					0.05582651694669494
AKIEQQAVK	9	Unmodified	_AKIEQQAVK_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8002014160156	2	507.800749	1013.58694	0.25539	0.00012969	-0.62242	-0.00031607	-0.36703	-0.00018638	507.8003324813896	51.877	0.90443	51.693	51.449	52.354	-0.18405					50	23	3	0	0	0	0.53979	1	5359	5359		56.721	3.7844	1	1264700	+		1213	24742	865	865	1312	1312					0.08069431851617992
AKIFKPLF	8	Unmodified	_AKIFKPLF_					0	0	0		ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2649230957031	2	482.304939	962.595324	-0.96323	-0.00046457	3.4414	0.0016598	2.4782	0.0011952	482.30634997213554	37.67	0.1676	37.587	37.503	37.671	-0.082516					7	4	2	0	0	0	0.027866	1	3079	3079		33.516	8.0654	1	96181			1214	4040	866	866	1313	1313					0.11253030558896171
AKIKPLAPPSA	11	Unmodified	_AKIKPLAPPSA_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.840576171875	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	0.95882	1	12752	12752		45.972	1.8554	1	11254000	+		1215	22298	867	867	1314	1314					0.12811168299458586
AKIKPLAPPSA	11	Unmodified	_AKIKPLAPPSA_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8402709960938	2	546.842416	1091.67028	-0.54263	-0.00029673	-3.6256	-0.0019826	-4.1682	-0.0022794	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	0.95882	2	12682	12682;12694		45.972	10.354	1	11370000	+		1216	22298	867	867	1315;1316	1315					0.12811168299458586
AKIKPLAPPSA	11	Unmodified	_AKIKPLAPPSA_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8404541015625	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	0.98904	1	12651	12651		39.253	2.0937	1	10488000	+		1217	22298	867	867	1317	1317					0.12811168299458586
AKIKPLAPPSA	11	Unmodified	_AKIKPLAPPSA_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.8403930664062	2	546.842416	1091.67028	-0.3389	-0.00018533	-3.9718	-0.002172	-4.3107	-0.0023573	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	0.84811	1	12370	12370		54.776	13.998	1	9530200	+		1218	22298	867	867	1318	1318					0.12811168299458586
AKIKRLFTV	9	Unmodified	_AKIKRLFTV_					0	0	0			REV__nc|ENSG00000119689|P36957-2|DLST	REV__nc|ENSG00000119689|P36957-2|DLST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3274536132812	2	538.352951	1074.69135	-0.34191	-0.00018407	1.8917	0.0010184	1.5498	0.00083433	538.3541991121373	99.719	0.20636	99.713	99.651	99.857	-0.0050888					6	4	2	0	0	0	0.024541	1	12693	12693		20.947	5.3051	1	149960	+		1219	22478	868	868	1319	1319					0.15699178398972435
AKILVEFVV	9	Unmodified	_AKILVEFVV_					0	0	0		ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.284423828125	2	509.320786	1016.62702	-0.21627	-0.00011015	-1.9949	-0.001016	-2.2112	-0.0011262	509.31860169822505	46.766	0.21608	46.497	46.379	46.595	-0.26939					7	5	2	0	0	0	0.024506	1	4497	4497		23.042	11.531	1	84497			1220	3947	869	869	1320	1320					0.11936978522180652
AKINNLGVIG	10	Unmodified	_AKINNLGVIG_					0	0	0			REV__ENST00000493829.5_1_2:85843459-85872221:+|nuORF	REV__ENST00000493829.5_1_2:85843459-85872221:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7516174316406	2	499.803291	997.59203	-0.045731	-2.2856E-05	-0.53157	-0.00026568	-0.5773	-0.00028854	499.8030958685838	36.043	0.26738	35.826	35.68	35.947	-0.21661					12	7	2	0	0	0	0.03519	1	2760	2760		27.882	2.3082	1	192450	+		1221	33773	870	870	1321	1321					0.09313735714238192
AKITETTLTT	10	Unmodified	_AKITETTLTT_					0	0	0			REV__ENSG00000168631|ENST00000462446|MUCL3	REV__ENSG00000168631|ENST00000462446|MUCL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7378540039062	2	539.803154	1077.59175	-0.16838	-9.0894E-05	0.41435	0.00022367	0.24597	0.00013277	539.8031105831305	36.995	0.47171	36.786	36.565	37.037	-0.2092					16	11	2	0	0	0	0.03519	1	2891	2891		9.7057	0	1	179910	+		1222	26279	871	871	1322	1322					0.05606271203691904
AKKARLQP	8	Unmodified	_AKKARLQP_					0	0	0			REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.76666259765625	2	456.292894	910.571235	-0.83421	-0.00038065	-2.0281	-0.00092542	-2.8623	-0.0013061	456.2919003577652	38.943	0.80748	38.968	38.649	39.456	0.024544					31	21	2	0	0	0	0.027866	1	3314	3314		24.203	3.7209	1	251760	+		1223	37745	872	872	1323	1323					0.11237190125223151
AKKARVVDLS	10	Unmodified	_AKKARVVDLS_					0	0	0		nc|ENSG00000125319|Q8N3J3-3|HROB;ENSG00000125319|ENST00000585683|HROB;nc|ENSG00000125319|Q8N3J3|HROB	nc|ENSG00000125319|Q8N3J3-3|HROB	nc|ENSG00000125319|Q8N3J3-3|HROB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.835205078125	2	543.835123	1085.65569	0.45755	0.00024883	-0.68814	-0.00037423	-0.23058	-0.0001254	543.834661039973	19.31	0.74352	19.11	18.811	19.554	-0.2001					39	14	4	0	0	0	0.88896	1	405	405		54.776	8.8244	1	595420			1224	4095	873	873	1324	1324					0.11629096151318663
AKKCKGKK	8	Unmodified	_AKKCKGKK_					0	0	0			REV__ENSG00000065320|ENST00000173229|NTN1	REV__ENSG00000065320|ENST00000173229|NTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7457275390625	2	445.783847	889.553142	-0.27725	-0.00012359	2.4809	0.0011059	2.2036	0.00098235	445.78597074215907	24.743	0.21425	24.528	24.463	24.677	-0.2151					6	4	2	0	0	0	0.027866	1	1108	1108		1.2052	0	1	33270	+		1225	20305	874	874	1325	1325					0.1039473187886415
AKKIKKPEP	9	Unmodified	_AKKIKKPEP_					0	0	0			REV__nc|ENSG00000133226|Q8IYB3-2|SRRM1	REV__nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.8369140625	2	519.837134	1037.65972	-0.55875	-0.00029046	1.2517	0.00065066	0.69291	0.0003602	519.8377031345655	69.954	0.47409	69.966	69.751	70.225	0.012421					18	12	2	0	0	0	0.5973	1	8364	8364		52.937	1.6012	1	3629600	+		1226	23362	875	875	1326	1326					0.14239185645033103
AKKKAGAK	8	Unmodified	_AKKKAGAK_					0	0	0			REV__ENSG00000149596|ENST00000372980|JPH2	REV__ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.8877868652344	2	401.268887	800.523222	0.63722	0.0002557	-1.3035	-0.00052304	-0.66625	-0.00026735	401.268305804694	22.9	0.18445	22.715	22.6	22.784	-0.18539					5	3	2	0	0	0	0.027866	1	847	847		11.511	0	1	18106	+		1227	24690	876	876	1327	1327					0.11498116205177666
AKKKEEKGAV	10	Unmodified	_AKKKEEKGAV_					0	0	0			REV__ENST00000539658.1_1_12:121148334-121149523:+|nuORF	REV__ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2476196289062	2	544.327131	1086.63971	-0.51332	-0.00027942	3.4007	0.0018511	2.8874	0.0015717	544.328873604615	52.651	0.39135	52.392	52.173	52.564	-0.25838					17	9	2	0	0	0	0.03519	1	5461	5461		14.865	0	1	202990	+		1228	34736	877	877	1328	1328					0.09985389914413645
AKKKGKSLA	9	Unmodified	_AKKKGKSLA_					0	0	0		nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758|RGS6	nc|ENSG00000182732|P49758-7|RGS6	nc|ENSG00000182732|P49758-7|RGS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7614440917969	2	465.808377	929.6022	0.17696	8.2431E-05	-3.2372	-0.0015079	-3.0603	-0.0014255	465.8069131055554	29.353	0.36238	29.431	29.165	29.527	0.078344					12	8	2	0	0	0	0.024292	1	1750	1750		68.787	15.435	1	113220			1229	18570	878	878	1329	1329					0.1345834343945853
AKKKKLKVS	9	Unmodified	_AKKKKLKVS_					0	0	0		ENST00000539429.1_1_12:124144026-124144779:+|nuORF;nc|ENSG00000111358|Q13889-2|GTF2H3;ENSG00000111358|ENST00000543341|GTF2H3	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	ENST00000539429.1_1_12:124144026-124144779:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.260986328125	2	515.360776	1028.707	-0.64309	-0.00033142	-2.3746	-0.0012238	-3.0177	-0.0015552	515.3598623958729	30.014	0.12004	30.022	29.922	30.042	0.0086708					4	2	2	0	0	0	0.024541	1	1867	1867		10.866	0	1	39024			1230	3111	879	879	1330	1330					0.19379464916050892
AKKLLYCSL	9	Unmodified	_AKKLLYCSL_					0	0	0		nc|ENSG00000144331|Q569K4-2|ZNF385B;nc|ENSG00000144331|Q569K4-5|ZNF385B;nc|ENSG00000144331|Q569K4|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B;nc|ENSG00000144331|Q569K4-4|ZNF385B;nc|ENSG00000144331|Q569K4-3|ZNF385B	nc|ENSG00000144331|Q569K4-2|ZNF385B	nc|ENSG00000144331|Q569K4-2|ZNF385B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8184204101562	2	519.804445	1037.59434	-0.0012713	-6.6083E-07	-0.69019	-0.00035876	-0.69146	-0.00035942	519.8035176431887	72.037	0.22652	72.037	71.904	72.131	0					8	5	2	0	0	0	0.024405	1	8764	8764		44.117	0	1	123600			1231	5727	880	880	1331	1331					0.07704448127674368
AKKNKVVLN	9	Unmodified	_AKKNKVVLN_					0	0	0			REV__ENSG00000100726|ENST00000262319|TELO2	REV__ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2528076171875	2	507.326934	1012.63931	0.68218	0.00034609	-0.1943	-9.8576E-05	0.48788	0.00024751	507.3268876571476	36.883	0.27804	36.883	36.764	37.042	0					9	6	2	0	0	0	0.024541	1	2953	2953		12.207	0	1	30923	+		1232	21145	881	881	1332	1332					0.13350014985235248
AKKQLSALL	9	Unmodified	_AKKQLSALL_					0	0	0			REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2613220214844	2	486.316035	970.617516	-0.11039	-5.3683E-05	-1.0502	-0.00051073	-1.1606	-0.00056441	486.31531414257614	46.258	0.42432	46.258	46.056	46.48	0					18	11	2	0	0	0	0.024323	1	4568	4568		35.618	2.8059	1	170190	+		1233	37565	882	882	1333	1333					0.13103210236658924
AKKREADL	8	Unmodified	_AKKREADL_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.26788330078125	2	465.771991	929.529429	1.1581	0.00053943	-3.3381	-0.0015548	-2.1799	-0.0010153	465.7703680047127	58.494	0.44524	58.586	58.409	58.855	0.091217					26	11	3	0	0	0	0.027866	1	6562	6562		42.396	0	1	1459500	+		1234	23737	883	883	1334	1334					0.06184589646022687
AKKREGELT	9	Unmodified	_AKKREGELT_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3088989257812	2	516.29583	1030.57711	0.099515	5.1379E-05	-2.7467	-0.0014181	-2.6472	-0.0013668	516.2940177541061	86.935	1.3075	86.9	86.346	87.654	-0.035362					68	30	3	0	0	0	0.024427	1	10939	10939		34.173	11.13	1	121500			1235	8653	884	884	1335	1335					0.06304243846238933
AKKRGKKKK	9	Unmodified	_AKKRGKKKK_					0	0	0		nc|ENSG00000099875|Q9HBH9-2|MKNK2;ENSG00000099875|ENST00000250896|MKNK2	nc|ENSG00000099875|Q9HBH9-2|MKNK2	nc|ENSG00000099875|Q9HBH9-2|MKNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.342529296875	2	536.377292	1070.74003	-1.6203	-0.00086908	-2.8328	-0.0015195	-4.4531	-0.0023885	536.37563736191	26.969	0.28864	27.05	26.883	27.171	0.081293					13	7	2	0	0	0	0.024541	1	1391	1391		7.6903	3.705	1	72994			1236	2092	885	885	1336	1336					0.2074909175873927
AKKRGKKKK	9	Unmodified	_AKKRGKKKK_					0	0	0		nc|ENSG00000099875|Q9HBH9-2|MKNK2;ENSG00000099875|ENST00000250896|MKNK2	nc|ENSG00000099875|Q9HBH9-2|MKNK2	nc|ENSG00000099875|Q9HBH9-2|MKNK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3291625976562	2	536.377292	1070.74003	0.25878	0.00013881	-2.6733	-0.0014339	-2.4145	-0.0012951	536.3760769028227	19.021	0.19689	18.86	18.738	18.935	-0.16079					5	3	2	0	0	0	0.024541	1	370	370		12.207	7.5251	1	28679			1237	2092	885	885	1337	1337					0.2074909175873927
AKKRILNL	8	Unmodified	_AKKRILNL_					0	0	0		nc|ENSG00000091831|P03372-4|ESR1	nc|ENSG00000091831|P03372-4|ESR1	nc|ENSG00000091831|P03372-4|ESR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3056335449219	2	478.324194	954.633835	0.19458	9.3072E-05	2.8877	0.0013812	3.0823	0.0014743	478.3257686081691	32.343	0.2705	32.343	32.186	32.457	0					9	6	2	0	0	0	0.027866	1	2219	2219		38.806	25.847	1	77821			1238	18112	886	886	1338	1338					0.15470336193402545
AKKRKMNF	8	Unmodified	_AKKRKMNF_					0	0	0		nc|ENSG00000171169|Q69YI7-2|NAIF1;ENSG00000171169|ENST00000373078|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2857360839844	2	511.800029	1021.5855	-0.50966	-0.00026084	1.1212	0.00057382	0.61151	0.00031297	512.3008683732127	27.785	0.23412	27.779	27.652	27.886	-0.0060635					6	5	2	0	0	0	0.027866	1	1535	1535		26.796	0	1	60443			1239	8122	887	887	1339	1339					0.07557519281863279
AKKRKMNF	8	Unmodified	_AKKRKMNF_					0	0	0		nc|ENSG00000171169|Q69YI7-2|NAIF1;ENSG00000171169|ENST00000373078|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.800029	1021.5855	-0.47611	-0.00024367	7.1748	0.0036721	6.6987	0.0034284	511.8034995452413	28.213	0.27793	28.061	27.885	28.162	-0.15195	0.14123	0.0044006	NaN	35.201	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64210			1240	8122	887	887							0.07557519281863279
AKKRKVLEF	9	Unmodified	_AKKRKVLEF_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;ENST00000508982.1_1_5:64859104-64863443:+|nuORF	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8157348632812	2	559.855858	1117.69716	-0.34957	-0.00019571	-0.41396	-0.00023176	-0.76352	-0.00042746	559.8552732337678	80.818	0.44611	80.672	80.451	80.897	-0.146					13	10	2	0	0	0	0.024405	1	9678	9678		35.618	0	1	111880			1241	3307	888	888	1340	1340					0.1430227691064374
AKKRLSESCT	10	Unmodified	_AKKRLSESCT_					0	0	0			REV__ENST00000330942.9_1_21:46221275-46221663:-|nuORF	REV__ENST00000330942.9_1_21:46221275-46221663:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2703857421875	2	561.800423	1121.58629	-0.5501	-0.00030905	-2.5606	-0.0014386	-3.1107	-0.0017476	561.7988209379938	27.113	0.67413	26.871	26.488	27.163	-0.24217					39	15	4	0	0	0	0.03519	1	1444	1444		58.23	0	1	510970	+		1242	30468	889	889	1341	1341					0.03036269140238801
AKKSLEVTV	9	Unmodified	_AKKSLEVTV_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79693603515625	2	487.797675	973.580796	-1.0216	-0.00049831	-0.23908	-0.00011662	-1.2606	-0.00061494	487.7974619641112	75.539	1.6042	75.539	75.155	76.759	0					110	41	4	0	0	0	0.96906	1	9265	9265		26.693	1.2427	1	8547400			1243	11016	890	890	1342	1342					0.09294913620090028
AKKSRQSK	8	Unmodified	_AKKSRQSK_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7669982910156	2	466.785433	931.556313	0.20933	9.7713E-05	2.6607	0.001242	2.8701	0.0013397	466.7865140378193	86.974	1.2267	86.974	86.386	87.613	0					58	28	3	0	0	0	0.027866	1	10938	10938		29.15	21.956	1	805280	+		1244	28201	891	891	1343	1343					0.08779698257228574
AKKSRQSK	8	Unmodified	_AKKSRQSK_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.785433	931.556313	0.35349	0.000165	2.5446	0.0011878	2.8981	0.0013528	466.7864301390985	86.955	0.92737	86.919	86.52	87.447	-0.035355	0.060014	0.0002157	NaN	29.15	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806160	+		1245	28201	891	891							0.08779698257228574
AKKSRQSK	8	Unmodified	_AKKSRQSK_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.785433	931.556313	0.10484	4.8938E-05	1.8426	0.00086008	1.9474	0.00090902	466.7861867487748	86.98	0.71703	86.793	86.428	87.146	-0.18696	-0.066102	-0.00043971	NaN	29.15	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112120	+		1246	28201	891	891							0.08779698257228574
AKKSRQSK	8	Unmodified	_AKKSRQSK_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.785433	931.556313	0.65775	0.00030703	2.2711	0.0010601	2.9289	0.0013672	466.78621464964016	86.863	0.72257	86.721	86.407	87.13	-0.14217	-0.13877	-3.9616E-05	NaN	29.15	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132720	+		1247	28201	891	891							0.08779698257228574
AKKSRQSK	8	Unmodified	_AKKSRQSK_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.785433	931.556313	-0.09213	-4.3005E-05	2.8554	0.0013328	2.7632	0.0012898	466.7866667305743	86.897	0.55213	86.76	86.443	86.995	-0.13734	-0.099821	0.00050582	NaN	29.15	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161950	+		1248	28201	891	891							0.08779698257228574
AKKWITLS	8	Unmodified	_AKKWITLS_					0	0	0			REV__nc|nan|Q9NQ32-2|C11orf16	REV__nc|nan|Q9NQ32-2|C11orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7783203125	2	473.789653	945.564752	0.34701	0.00016441	-0.4103	-0.0001944	-0.063297	-2.999E-05	473.7896369664232	23.186	0.19789	23.186	23.123	23.321	0					7	4	2	0	0	0	0.027866	1	894	894		29.15	10.825	1	131650	+		1249	26991	892	892	1344	1344					0.08979252173844543
AKLDELAKA	9	Unmodified	_AKLDELAKA_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.78216552734375	2	479.782025	957.549496	-0.35617	-0.00017088	0.28187	0.00013523	-0.074304	-3.565E-05	479.7820419147621	57.715	0.53991	57.482	57.2	57.74	-0.23363					42	13	4	0	0	0	0.071379	2	6322	6289;6322		120.87	11.39	1	6497900	+		1250	26467	893	893	1345;1346	1346					0.0690234058599799
AKLDLTVNFI	10	Unmodified	_AKLDLTVNFI_					0	0	0		ENST00000520446.5_1_8:133637625-133687739:-|nuORF;nc|ENSG00000129295|Q86X45-2|DNAAF11;ENSG00000129295|ENST00000620350|DNAAF11	ENST00000520446.5_1_8:133637625-133687739:-|nuORF	ENST00000520446.5_1_8:133637625-133687739:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.83056640625	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.0344	1	11025	11025		41.427	2.1738	1	17705000			1251	4342	894	894	1347	1347					0.08819158199935373
AKLDLTVNFI	10	Unmodified	_AKLDLTVNFI_					0	0	0		ENST00000520446.5_1_8:133637625-133687739:-|nuORF;nc|ENSG00000129295|Q86X45-2|DNAAF11;ENSG00000129295|ENST00000620350|DNAAF11	ENST00000520446.5_1_8:133637625-133687739:-|nuORF	ENST00000520446.5_1_8:133637625-133687739:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8304443359375	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0271	1	11051	11051		42.396	2.523	1	19210000			1252	4342	894	894	1348	1348					0.08819158199935373
AKLDNSATAP	10	Unmodified	_AKLDNSATAP_					0	0	0			REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.29345703125	2	494.258914	986.503274	2.458	0.0012149	0.98931	0.00048897	3.4473	0.0017039	494.25938686408733	19.479	0.39376	19.545	19.389	19.783	0.066195					10	7	2	0	0	0	0.03519	1	407	407		47.657	3.5405	1	12736	+		1253	22424	895	895	1349	1349					0.009482756839020112
AKLECGFLYNQ	11	Unmodified	_AKLECGFLYNQ_					0	0	0			REV__ENST00000523339.1_1_5:170814874-170817152:+|nuORF	REV__ENST00000523339.1_1_5:170814874-170817152:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.7847595214844	3	429.213029	1284.61726	0.081461	3.4964E-05	4.3353	0.0018608	4.4168	0.0018957	429.5495696076041	26.015	0.15406	25.844	25.771	25.925	-0.17078					10	4	3	0	0	0	0.024767	1	1281	1281		19.627	3.0971	1	92394	+		1254	27388	896	896	1350	1350					-0.013665775454910545
AKLELEAEL	9	Unmodified	_AKLELEAEL_					0	0	0			REV__EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant	REV__EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.285888671875	2	508.28714	1014.55973	-0.19749	-0.00010038	0.10567	5.371E-05	-0.091818	-4.667E-05	508.28712281739155	58.147	1.016	57.956	57.48	58.496	-0.19018					59	25	3	0	0	0	0.067814	1	6402	6402		122.18	6.6819	1	3701300	+		1255	19743	897	897	1351	1351					0.05302903520566815
AKLFCTPPQ	9	Unmodified	_AKLFCTPPQ_					0	0	0			REV__ENST00000330634.11_1_14:105185326-105185551:+|nuORF	REV__ENST00000330634.11_1_14:105185326-105185551:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7511901855469	2	502.76532	1003.51609	-0.52437	-0.00026363	-1.6752	-0.00084224	-2.1996	-0.0011059	502.7631634873054	33.678	0.34072	33.68	33.419	33.759	0.0018997					15	8	2	0	0	0	0.024477	1	2423	2423		35.618	10.044	1	351900	+		1256	30460	898	898	1352	1352					0.014470155424533004
AKLFIPDLK	9	Unmodified	_AKLFIPDLK_					0	0	0			REV__INTS12|p.E8K|1|0.31|ENSG00000138785|chr4:105699984-105699984|C/T|missense_variant	REV__INTS12|p.E8K|1|0.31|ENSG00000138785|chr4:105699984-105699984|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7720947265625	2	522.826235	1043.63792	-0.066888	-3.4971E-05	-0.76458	-0.00039974	-0.83146	-0.00043471	522.8255964103774	73.03	0.21345	72.765	72.681	72.894	-0.26479					6	4	2	0	0	0	0.024495	1	8571	8571		34.173	8.5985	1	46683	+		1257	36152	899	899	1353	1353					0.11784380896460789
AKLGEPPL	8	Unmodified	_AKLGEPPL_					0	0	0			REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.7462158203125	2	412.747453	823.480354	0.66518	0.00027455	-3.7783	-0.0015595	-3.1131	-0.0012849	412.74581110347407	84.535	2.0721	84.397	83.629	85.702	-0.13789					118	48	4	0	0	0	1.0009	1	10212	10212		37.159	3.6435	1	4796400	+		1258	33241	900	900	1354	1354					0.06155301357091503
AKLILHILP	9	Unmodified	_AKLILHILP_					0	0	0			REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF	REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2841491699219	2	509.344595	1016.67464	0.05877	2.9934E-05	-4.0957	-0.0020861	-4.0369	-0.0020562	509.3422338627916	46.444	0.18042	46.347	46.223	46.403	-0.096649					6	4	2	0	0	0	0.024541	1	4486	4486		12.959	0	1	89593	+		1259	32395	901	901	1355	1355					0.1669667751303905
AKLILHILP	9	Unmodified	_AKLILHILP_					0	0	0			REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF	REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2843322753906	2	509.344595	1016.67464	-0.73933	-0.00037657	-0.80196	-0.00040847	-1.5413	-0.00078505	509.34308869693274	46.486	0.29099	46.284	46.081	46.372	-0.20226					10	7	2	0	0	0	0.024541	1	4485	4485		12.959	0.75233	1	190630	+		1260	32395	901	901	1356	1356					0.1669667751303905
AKLKEKQI	8	Unmodified	_AKLKEKQI_					0	0	0		NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF	NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.3078918457031	2	479.30821	956.601866	-0.39727	-0.00019041	0.58791	0.00028179	0.19064	9.1375E-05	479.3082137958977	20.816	0.9414	20.593	20.117	21.058	-0.22344					42	18	4	0	0	0	0.71063	1	563	563		66.429	3.123	1	450550			1261	914	902	902	1357	1357					0.12182923719615246
AKLKLQGSPVP	11	Unmodified	_AKLKLQGSPVP_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000493195.5_1_1:159897137-159898861:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.3109130859375	2	569.353148	1136.69174	-0.15109	-8.6023E-05	-2.1177	-0.0012057	-2.2688	-0.0012917	569.3517016760404	31.373	0.41205	31.131	30.995	31.407	-0.24109					15	10	2	0	0	0	0.024745	1	2068	2068		33.922	7.2287	1	133540			1262	1794	903	903	1358	1358					0.1288655332818962
AKLKPGAPL	9	Unmodified	_AKLKPGAPL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant;FLNA|p.G295Afs*4|1|0.66|ENSG00000196924|chrX:154366837-154366837|T/-|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2353210449219	2	447.792195	893.569838	-0.40933	-0.0001833	0.58984	0.00026412	0.1805	8.0829E-05	447.7923363277045	37.498	0.5262	37.434	37.163	37.69	-0.063385					30	14	3	0	0	0	0.024412	1	3073	3073		40.573	13.777	1	433730			1263	9935;4979	904	904	1359	1359					0.1187955603646742
AKLKRREV	8	Unmodified	_AKLKRREV_					0	0	0		nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;ENST00000512858.1_1_4:88986866-88996843:+|nuORF	nc|ENSG00000118762|Q13563-5|PKD2	nc|ENSG00000118762|Q13563-5|PKD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7706298828125	2	500.324725	998.634898	-0.1881	-9.4111E-05	3.5211	0.0017617	3.333	0.0016676	500.3263569159262	65.126	0.48221	65.164	65.007	65.489	0.037376					24	13	3	0	0	0	0.027866	1	7656	7656		29.15	8.2026	1	200900			1264	3703	905	905	1360	1360					0.1355255056232636
AKLLKTAQP	9	Unmodified	_AKLLKTAQP_					0	0	0			REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.74578857421875	2	485.30821	968.601866	0.16021	7.7751E-05	-0.35154	-0.0001706	-0.19133	-9.2854E-05	485.30795067779616	61.965	0.59163	61.708	61.505	62.097	-0.25725					21	14	2	0	0	0	0.0242	1	6992	6992		60.118	10.677	1	164880	+		1265	35087	906	906	1361	1361					0.11630923719610564
AKLLKTAQP	9	Unmodified	_AKLLKTAQP_					0	0	0			REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.30821	968.601866	-0.56547	-0.00027443	1.4382	0.00069798	0.87276	0.00042356	485.3086094298829	61.739	0.67023	61.739	61.374	62.044	0	0.036772	0.00051304	NaN	60.118	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	923080	+		1266	35087	906	906							0.11630923719610564
AKLLKTAQP	9	Unmodified	_AKLLKTAQP_					0	0	0			REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.30821	968.601866	-0.69359	-0.0003366	1.4561	0.00070667	0.76255	0.00037007	485.3086031112183	61.681	0.93061	61.752	61.095	62.026	0.071129	0.04997	0.00053042	NaN	60.118	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	809330	+		1267	35087	906	906							0.11630923719610564
AKLNLLTCQV	10	Unmodified	_AKLNLLTCQV_					0	0	0		ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.81640625	2	551.818084	1101.62162	-0.16757	-9.2469E-05	-1.2494	-0.00068946	-1.417	-0.00078193	551.8172894574166	93.319	0.87872	93.319	93.009	93.888	0					51	20	4	0	0	0	0.72729	1	11848	11848		65.465	4.4934	1	1093200			1268	6342;6222	907	907	1362	1362					0.07486931668063335
AKLNLLTCQV	10	Unmodified	_AKLNLLTCQV_					0	0	0		ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8140869140625	2	551.818084	1101.62162	-0.80995	-0.00044694	-1.0279	-0.00056719	-1.8378	-0.0010141	551.81745148556	93.291	0.71577	93.287	92.99	93.706	-0.0042038					43	16	4	0	0	0	0.58878	1	11832	11832		78.264	8.6362	1	1115600			1269	6342;6222	907	907	1363	1363					0.07486931668063335
AKLNLLTCQV	10	Unmodified	_AKLNLLTCQV_					0	0	0		ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.8148193359375	2	551.818084	1101.62162	-0.53513	-0.0002953	-1.0535	-0.00058136	-1.5887	-0.00087666	551.8173634686718	93.296	0.80151	93.304	92.971	93.773	0.0077286					49	18	4	0	0	0	0.50091	1	11790	11790		88.177	28.059	1	938900			1270	6342;6222	907	907	1364	1364					0.07486931668063335
AKLRVGRNS	9	Unmodified	_AKLRVGRNS_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7923583984375	2	500.804157	999.593761	-0.014397	-7.2099E-06	0.84126	0.00042131	0.82686	0.0004141	500.80416225725367	52.052	1.0835	52.052	51.667	52.75	0					45	28	2	0	0	0	0.024523	1	5654	5654		15.642	0	1	732370	+		1271	20842	908	908	1365	1365					0.09394789522855262
AKLSAHVAW	9	Unmodified	_AKLSAHVAW_					0	0	0		ENST00000306749.3_1_17:80054214-80056200:-|nuORF	ENST00000306749.3_1_17:80054214-80056200:-|nuORF	ENST00000306749.3_1_17:80054214-80056200:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.29132080078125	2	491.777077	981.5396	-0.054799	-2.6949E-05	-3.6475	-0.0017937	-3.7023	-0.0018207	491.7751340874357	26.846	0.41854	26.846	26.615	27.034	0					13	9	2	0	0	0	0.024436	1	1413	1413		38.806	3.1879	1	166870			1272	12002	909	909	1366	1366					0.04809197371275786
AKLSYDKS	8	Unmodified	_AKLSYDKS_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-2|FSTL4;ENSG00000053108|ENST00000265342|FSTL4;nc|ENSG00000053108|Q6MZW2-3|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.76629638671875	2	456.245275	910.475997	0.070805	3.2305E-05	-2.6826	-0.0012239	-2.6118	-0.0011916	456.24443673736226	23.133	0.36266	23.133	22.803	23.165	0					13	7	3	0	0	0	0.027866	1	875	875		15.642	0	1	87534			1273	1157	910	910	1367	1367					0.017177921435290955
AKMQVKALL	9	Unmodified	_AKMQVKALL_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7800598144531	2	501.312438	1000.61032	-0.1235	-6.191E-05	-0.39329	-0.00019716	-0.51679	-0.00025907	501.3120704512963	45.178	0.68807	45.222	44.824	45.512	0.04388					55	19	4	0	0	0	0.023596	1	4346	4346		63.306	0	1	1654400	+		1274	23968	911	911	1368	1368					0.11004154364582064
AKMRKELA	8	Unmodified	_AKMRKELA_					0	0	0			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MSMS	OPSCC_39_ClassI_Rep-3	3	473.7784729003906	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.026	1	23.101	22.601	23.601	0.074495								0	0	0	0.4514	1	820	820		60.294	4.7898	1		+		1275	28326	912	912	1369	1369					0.06802124153625755
AKPEQSVLR	9	Unmodified	_AKPEQSVLR_					0	0	0			REV__ENSG00000167986|ENST00000301764|DDB1	REV__ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.80517578125	2	514.298373	1026.58219	0.25781	0.00013259	1.3237	0.0006808	1.5816	0.00081339	514.2979040915304	58.645	0.95386	58.645	58.228	59.182	0					35	25	2	0	0	0	0.024477	1	6603	6603		14.865	0	1	2115600	+		1276	26208	913	913	1370	1370					0.06996547708831713
AKPGHWTYTLN	11	Unmodified	_AKPGHWTYTLN_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.26611328125	3	429.887533	1286.64077	2.3338	0.0010033	-3.8198	-0.0016421	-1.486	-0.00063883	430.21953779461086	24.096	0.26747	23.915	23.804	24.072	-0.18089					6	5	2	0	0	0	0.024816	1	1000	1000		4.8861	0	1	20853			1277	5186	914	914	1371	1371					0.008916042833334359
AKPGLLRKL	9	Unmodified	_AKPGLLRKL_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77154541015625	2	498.339844	994.665135	-0.75871	-0.00037809	0.44142	0.00021998	-0.31729	-0.00015812	498.33997296500854	28.491	0.23815	28.339	28.162	28.401	-0.15195					7	5	2	0	0	0	0.024541	1	1642	1642		16.473	4.2663	1	64833	+		1278	24957	915	915	1372	1372					0.16758909227496588
AKPQMLQV	8	Unmodified	_AKPQMLQV_					0	0	0			REV__ENSG00000203908|ENST00000370367|KHDC3L	REV__ENSG00000203908|ENST00000370367|KHDC3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.23956298828125	2	457.760038	913.505523	-0.35965	-0.00016463	-1.176	-0.00053832	-1.5356	-0.00070295	457.7598972697669	33.51	0.18797	33.516	33.461	33.649	0.0066261					7	4	2	0	0	0	0.027866	1	2431	2431		25.45	4.9683	1	182350	+		1279	28554	916	916	1373	1373					0.045310328880191264
AKPRGPLQAL	10	Unmodified	_AKPRGPLQAL_					0	0	0		ENST00000318003.11_1_19:14041215-14041674:+|nuORF	ENST00000318003.11_1_19:14041215-14041674:+|nuORF	ENST00000318003.11_1_19:14041215-14041674:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7950439453125	2	525.824558	1049.63456	-1.7514	-0.00092092	4.2184	0.0022181	2.467	0.0012972	526.3279013460502	36.125	0.099331	36.125	36.063	36.162	0					4	2	2	0	0	0	0.03519	1	2827	2827		20.947	0	1	50360			1280	12169	917	917	1374	1374					0.11173130842439605
AKPSSVEGIK	10	Unmodified	_AKPSSVEGIK_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.81884765625	2	508.292756	1014.57096	-0.55569	-0.00028245	-0.85662	-0.00043541	-1.4123	-0.00071787	508.29204120452783	23.072	0.32227	22.887	22.784	23.107	-0.18539					10	6	2	0	0	0	0.03519	1	863	863		24.519	0	1	23857	+		1281	20064	918	918	1375	1375					0.06425725614724342
AKQARTEV	8	Unmodified	_AKQARTEV_					0	0	0			REV__nc|ENSG00000135899|Q9HB58-5|SP110	REV__nc|ENSG00000135899|Q9HB58-5|SP110	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.7485046386719	2	451.756341	901.498129	-0.69457	-0.00031378	-0.56131	-0.00025358	-1.2559	-0.00056735	451.75604425436165	39.556	0.48703	39.579	39.455	39.942	0.023727					19	13	2	0	0	0	0.027866	1	3385	3385		11.511	0	1	253090	+		1282	23590	919	919	1376	1376					0.043440166119466994
AKQDVKVF	8	Unmodified	_AKQDVKVF_					0	0	0		nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-4|GRB10;ENSG00000106070|ENST00000401949|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	MSMS	OPSCC_40_ClassI_Rep-2	5	467.7715759277344	2	467.77146	933.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.533	1	49.253	48.753	49.753	-0.27977								0	0	0	0.46303	1	4969	4969		58.782	12.81	1				1283	2756	920	920	1377	1377					0.05894375277136987
AKQEGSGGL	9	Unmodified	_AKQEGSGGL_					0	0	0			REV__ENST00000262809.8_1_19:18555463-18555538:-|nuORF	REV__ENST00000262809.8_1_19:18555463-18555538:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.7197570800781	2	423.719424	845.424296	-0.98727	-0.00041833	1.611	0.00068263	0.62377	0.0002643	423.71999093653716	39.923	0.81112	39.81	39.467	40.278	-0.11222					57	21	4	0	0	0	0.20967	1	3452	3452		87.754	0	1	2571200	+		1284	29674	921	921	1378	1378					-0.0045995155037417135
AKQENSAKKFY	11	Unmodified	_AKQENSAKKFY_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.5666198730469	3	438.56646	1312.67755	-0.50896	-0.00022321	0.4803	0.00021065	-0.028653	-1.2566E-05	438.566636483832	55.719	1.0944	55.503	55.104	56.198	-0.21551					82	29	5	0	0	0	0.97559	1	5976	5976		42.243	9.492	1	3162100			1285	4657	922	922	1379	1379					0.033718561092200616
AKQLIKMAQ	9	Unmodified	_AKQLIKMAQ_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2608642578125	2	515.807519	1029.60049	-1.4853	-0.00076613	-0.28797	-0.00014854	-1.7733	-0.00091467	516.3086542568362	30.14	0.19857	30.14	29.977	30.176	0					6	4	2	0	0	0	0.024506	1	1889	1889		10.866	0	1	85177	+		1286	26891	923	923	1380	1380					0.08686966359186954
AKRAELPE	8	Unmodified	_AKRAELPE_					0	0	0			REV__ENSG00000122965|ENST00000261741|RBM19	REV__ENSG00000122965|ENST00000261741|RBM19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2583312988281	2	457.258717	912.50288	0.30603	0.00013993	-0.22517	-0.00010296	0.080855	3.6971E-05	457.25853038070363	61.491	0.97244	61.264	60.937	61.909	-0.22663					71	25	4	0	0	0	0.4075	1	7116	7116		96.19	5.8206	1	6947100	+		1287	22671	924	924	1381	1381					0.043129007547122455
AKRKKGKK	8	Unmodified	_AKRKKGKK_					0	0	0			REV__ENSG00000134697|ENST00000373062|GNL2	REV__ENSG00000134697|ENST00000373062|GNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2877502441406	2	472.329811	942.645068	0.46773	0.00022092	-2.5466	-0.0012029	-2.0789	-0.00098193	472.329884755074	94.322	0.28133	94.2	94.058	94.34	-0.12215					10	6	2	0	0	0	0.027866	1	11625	11625		0	0	1	69597	+		1288	23472	925	925	1382	1382					0.17145158287553386
AKRPNRLS	8	Unmodified	_AKRPNRLS_					0	0	0		ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4	ENSG00000133124|ENST00000372129|IRS4	ENSG00000133124|ENST00000372129|IRS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.79736328125	2	471.2856	940.556647	-0.17898	-8.4349E-05	3.4126	0.0016083	3.2336	0.001524	471.2868910581069	85.409	0.90984	85.435	85.036	85.946	0.025536					33	21	3	0	0	0	0.027866	1	10674	10674		31.955	0	1	229970			1289	4689	926	926	1383	1383					0.08399117977091919
AKRPRVAGP	9	Unmodified	_AKRPRVAGP_					0	0	0		nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6;ENST00000470003.5_1_16:58549441-58550248:+|nuORF	nc|ENSG00000103037|Q8TBK2-2|SETD6	nc|ENSG00000103037|Q8TBK2-2|SETD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.28680419921875	2	476.295968	950.577383	0.30919	0.00014727	2.7675	0.0013182	3.0767	0.0014654	476.2971467888641	54.362	2.691	54.215	53.095	55.786	-0.14753					108	75	2	0	0	0	0.024436	1	5927	5927		23.042	0	1	311810			1290	2457	927	927	1384	1384					0.10011708356751114
AKRRKKRQK	9	Unmodified	_AKRRKKRQK_					0	0	0		ENST00000468316.1_1_7:102045023-102065555:+|nuORF;ENST00000469763.5_1_7:102016742-102065555:+|nuORF;ENSG00000128563|ENST00000397912|PRKRIP1	ENST00000468316.1_1_7:102045023-102065555:+|nuORF	ENST00000468316.1_1_7:102045023-102065555:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.20733642578125	3	400.270424	1197.78944	0.93122	0.00037274	-2.6154	-0.0010469	-1.6842	-0.00067412	400.26937926027256	23.784	0.39399	23.582	23.398	23.792	-0.20193					16	8	2	0	0	0	0.024541	1	1002	1002		24.519	5.4157	1	36360			1291	4294	928	928	1385	1385					0.19845799767540484
AKRRQDSL	8	Unmodified	_AKRRQDSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2694396972656	2	487.280515	972.546476	-0.19963	-9.7275E-05	2.7986	0.0013637	2.5989	0.0012664	487.2817626506308	54.12	0.73867	54.12	53.618	54.357	0					30	20	3	0	0	0	0.027866	1	5812	5812		35.618	0	1	257650			1292	2053	929	929	1386	1386					0.05910510251840151
AKRRQDSL	8	Unmodified	_AKRRQDSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.280515	972.546476	-0.014901	-7.2608E-06	3.1297	0.001525	3.1148	0.0015178	487.28174394938327	54.106	0.41098	53.959	53.821	54.232	-0.14723	-0.064498	2.4648E-05	NaN	20.947	27	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226140			1293	2053	929	929							0.05910510251840151
AKRYMPQK	8	Unmodified	_AKRYMPQK_					0	0	0			REV__nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	REV__nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2860412597656	2	511.284211	1020.55387	-0.8468	-0.00043296	4.1967	0.0021457	3.3499	0.0017128	511.2863201369854	27.783	1.0552	27.783	27.435	28.49	0					64	26	4	0	0	0	0.91239	1	1574	1574		50.025	2.1089	1	2592500	+		1294	22487	930	930	1387	1387					0.044415265279099
AKSFVLNL	8	Unmodified	_AKSFVLNL_					0	0	0		ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF	ENSG00000100097|ENST00000215909|LGALS1	ENSG00000100097|ENST00000215909|LGALS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2689208984375	2	446.268553	890.522553	-0.56936	-0.00025409	0.76989	0.00034358	0.20053	8.9489E-05	446.2687766010044	65.449	1.1266	65.176	64.825	65.951	-0.27282					68	30	4	0	0	0	0.77775	1	7718	7718		60.972	2.19	1	5525300			1295	2132	931	931	1388	1388					0.07291276765454313
AKSKTSEALAK	11	Unmodified	_AKSKTSEALAK_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.32987	1132.64519	-0.4315	-0.0002448	-0.024713	-1.4021E-05	-0.45621	-0.00025882	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.0022	1	11607	11607		36.318	5.814	1	13648000			1296	3961	932	932	1389	1389					0.08417068706239661
AKSKTSEALAK	11	Unmodified	_AKSKTSEALAK_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3301391601562	2	567.32987	1132.64519	-0.39327	-0.00022312	0.053324	3.0253E-05	-0.33995	-0.00019286	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0215	1	11068	11068		32.034	5.3412	1	19210000			1297	3961	932	932	1390	1390					0.08417068706239661
AKSKTSEALAK	11	Unmodified	_AKSKTSEALAK_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3306274414062	2	567.32987	1132.64519	0.22871	0.00012975	-0.73799	-0.00041868	-0.50928	-0.00028893	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.99147	2	11018	11018;11042		38.714	4.7925	1	18337000			1298	3961	932	932	1391;1392	1391					0.08417068706239661
AKSLKTHA	8	Unmodified	_AKSLKTHA_					0	0	0			REV__KLHL2-OPTN|2|fusion	REV__KLHL2-OPTN|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7404479980469	2	428.255977	854.497401	-0.24316	-0.00010414	4.3692	0.0018711	4.126	0.001767	428.25813746614836	22.59	0.92371	22.404	22	22.923	-0.18539					29	19	2	0	0	0	0.027866	1	796	796		82.305	11.009	1	58494	+		1299	36186	933	933	1393	1393					0.06433221962890912
AKSQLSGSTG	10	Unmodified	_AKSQLSGSTG_					0	0	0			REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF	REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.244384765625	2	468.243264	934.471974	0.40243	0.00018843	2.7982	0.0013102	3.2006	0.0014987	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	1.0816	1	12947	12947		35.152	4.6484	1	4364500	+		1300	20040	934	934	1394	1394					0.002117026498240193
AKSSARRLL	9	Unmodified	_AKSSARRLL_					0	0	0			REV__ENSG00000167291|ENST00000310924|TBC1D16	REV__ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78277587890625	2	501.314358	1000.61416	-0.37578	-0.00018838	-4.2814	-0.0021463	-4.6572	-0.0023347	501.3120607517949	45.159	0.78727	45.159	44.793	45.58	0					51	22	3	0	0	0	0.024209	1	4371	4371		76.774	25.439	1	1979800	+		1301	26126	935	935	1395	1395					0.11387960182662482
AKSSSVAAL	9	Unmodified	_AKSSSVAAL_					0	0	0			REV__ENST00000491720.5_1_2:182783318-182792989:+|nuORF	REV__ENST00000491720.5_1_2:182783318-182792989:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.23931884765625	2	417.239993	832.465432	0.31115	0.00012982	-2.4499	-0.0010222	-2.1387	-0.00089236	417.23890073393284	87.912	0.94289	87.775	87.372	88.315	-0.13744					37	22	2	0	0	0	0.72875	1	10719	10719		44.117	6.9577	1	1894000	+		1302	23855	936	936	1396	1396					0.04249809489101608
AKSSSVAAL	9	Unmodified	_AKSSSVAAL_					0	0	0			REV__ENST00000491720.5_1_2:182783318-182792989:+|nuORF	REV__ENST00000491720.5_1_2:182783318-182792989:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	417.239993	832.465432	0.27597	0.00011514	-2.2001	-0.00091797	-1.9241	-0.00080283	417.238994678704	87.954	1.3047	87.817	87.388	88.693	-0.13613	0.037147	0.00014662	NaN	44.117	49	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2230800	+		1303	23855	936	936							0.04249809489101608
AKSTKNCT	8	Unmodified	_AKSTKNCT_					0	0	0			REV__nc|ENSG00000162552|P56705-2|WNT4	REV__nc|ENSG00000162552|P56705-2|WNT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.23480224609375	2	426.715827	851.417102	-1.0032	-0.0004281	1.4705	0.00062747	0.46723	0.00019937	426.71636347735244	28.057	0.55835	28.057	27.804	28.362	0					24	13	3	0	0	0	0.027866	1	1577	1577		25.574	10.91	1	399660	+		1304	25454	937	937	1397	1397					-0.014550074224757736
AKSTLMLLTL	10	Oxidation (M)	_AKSTLM(Oxidation (M))LLTL_		AKSTLM(1)LLTL		AKSTLM(50)LLTL	0	0	1		nc|ENSG00000116688|O95140-2|MFN2	nc|ENSG00000116688|O95140-2|MFN2	nc|ENSG00000116688|O95140-2|MFN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8301391601562	2	553.828117	1105.64168	0.11487	6.3616E-05	3.2094	0.0017774	3.3242	0.0018411	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	0.96822	1	11139	11139		49.536	8.7579	1	4870500			1305	18195	938	938	1398	1398		564			0.09308682608025265
AKTITAIAGL	10	Unmodified	_AKTITAIAGL_					0	0	0		ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7897644042969	2	479.800217	957.585882	0.37224	0.0001786	-0.52117	-0.00025006	-0.14893	-7.1455E-05	479.7998746710627	34.207	0.65876	33.983	33.64	34.299	-0.22412					31	16	3	0	0	0	0.03519	1	2459	2459		20.947	6.0821	1	360760			1306	13726	939	939	1399	1399					0.1053921748269886
AKTITAIAGL	10	Unmodified	_AKTITAIAGL_					0	0	0		ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.800217	957.585882	-0.31348	-0.00015041	0.48104	0.0002308	0.16756	8.0395E-05	479.8003625972943	34.156	0.53263	33.95	33.71	34.242	-0.20696	-0.012333	0.0002619	NaN	19.104	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389720			1307	13726	939	939							0.1053921748269886
AKTLKALR	8	Unmodified	_AKTLKALR_					0	0	0			REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.61981201171875	2	450.803094	899.591636	-0.081752	-3.6854E-05	-0.17849	-8.0462E-05	-0.26024	-0.00011732	450.8029480870469	17.984	0.24949	17.777	17.564	17.813	-0.20669					7	4	2	0	0	0	0.027866	1	223	223		3.9852	2.5204	1	145410	+		1308	20606	940	940	1400	1400					0.13782360785023684
AKTMNKDLN	9	Unmodified	_AKTMNKDLN_					0	0	0			REV__ENSG00000181804|ENST00000316549|SLC9A9	REV__ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7677612304688	2	517.768591	1033.52263	-0.81718	-0.00042311	-2.1823	-0.0011299	-2.9995	-0.001553	517.7672989124487	52.171	0.67065	52.263	52.003	52.674	0.091938					42	16	4	0	0	0	0.247	1	5503	5503		82.75	7.7072	1	1670800	+		1309	27430	941	941	1401	1401					0.007209087031696981
AKTMNKDLN	9	Unmodified	_AKTMNKDLN_					0	0	0			REV__ENSG00000181804|ENST00000316549|SLC9A9	REV__ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	517.768591	1033.52263	-0.51776	-0.00026808	-2.3617	-0.0012228	-2.8794	-0.0014909	517.7672461033975	52.274	0.74023	52.274	52.049	52.789	0	0.014277	0.00014354	NaN	82.75	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2303600	+		1310	27430	941	941							0.007209087031696981
AKTMNKDLN	9	Unmodified	_AKTMNKDLN_					0	0	0			REV__ENSG00000181804|ENST00000316549|SLC9A9	REV__ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	517.768591	1033.52263	-0.81718	-0.00042311	-2.1823	-0.0011299	-2.9995	-0.001553	517.7672989124487	52.171	0.67065	52.263	52.003	52.674	0.091938	0.0029696	0.00032926	NaN	82.75	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1670800	+		1311	27430	941	941							0.007209087031696981
AKTVEGLYL	9	Unmodified	_AKTVEGLYL_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2851867675781	2	497.2844	992.554247	-0.80717	-0.00040139	0.8209	0.00040822	0.01373	6.8278E-06	497.2846807909162	35.795	0.65409	35.59	35.265	35.919	-0.20518					40	17	3	0	0	0	0.25032	1	2738	2738		82.305	5.5309	1	3454800	+		1312	19302	942	942	1402	1402					0.05767224728754172
AKTVEGLYL	9	Unmodified	_AKTVEGLYL_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2858581542969	2	497.2844	992.554247	-0.16826	-8.3675E-05	0.026491	1.3174E-05	-0.14177	-7.0501E-05	497.28431439566583	35.781	0.86925	35.568	35.115	35.985	-0.21246					62	23	4	0	0	0	0.4752	1	2731	2731		60.972	4.2509	1	3366600	+		1313	19302	942	942	1403	1403					0.05767224728754172
AKTVEGLYL	9	Unmodified	_AKTVEGLYL_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	497.2844	992.554247	-0.16826	-8.3675E-05	0.026491	1.3174E-05	-0.14177	-7.0501E-05	497.28431439566583	35.781	0.86925	35.568	35.115	35.985	-0.21246	0.0057414	-0.000473	NaN	82.305	62	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3366600	+		1314	19302	942	942							0.05767224728754172
AKVKEFTM	8	Unmodified	_AKVKEFTM_					0	0	0			REV__ENSG00000165471|ENST00000674931|MBL2	REV__ENSG00000165471|ENST00000674931|MBL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7275085449219	2	477.259871	952.505189	-0.28458	-0.00013582	3.4809	0.0016613	3.1963	0.0015255	477.26158602222506	26.463	0.35289	26.295	26.153	26.506	-0.16816					12	8	2	0	0	0	0.027866	1	1385	1385		25.45	0	1	48258	+		1315	25888	943	943	1404	1404					0.027036131681711595
AKVQDICFS	9	Unmodified	_AKVQDICFS_					0	0	0		nc|ENSG00000141376|Q9H6U6-6|BCAS3;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	nc|ENSG00000141376|Q9H6U6-6|BCAS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.8150329589844	2	505.75241	1009.49027	-0.046927	-2.3734E-05	-0.55994	-0.00028319	-0.60687	-0.00030693	506.25499855237047	74.805	0.54031	74.541	74.318	74.858	-0.26326					16	12	2	0	0	0	0.024405	1	8871	8871		27.882	4.8398	1	109250			1316	5485	944	944	1405	1405					-0.014098786998374635
AKVRVEFPHK	10	Unmodified	_AKVRVEFPHK_					0	0	0		nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.85546875	2	605.85639	1209.69823	-0.9948	-0.00060271	-0.19379	-0.00011741	-1.1886	-0.00072012	605.8561374564249	82.054	1.4639	81.914	81.572	83.036	-0.14014					87	33	4	0	0	0	0.88896	1	9856	9856		54.776	0	1	2530200			1317	18838	945	945	1406	1406					0.10176491279548827
AKYLPKLASG	10	Unmodified	_AKYLPKLASG_					0	0	0		ENST00000505192.5_1_3:128598473-128627108:+|nuORF;ENSG00000177646|ENST00000308982|ACAD9	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3049926757812	2	524.313492	1046.61243	-0.53841	-0.0002823	-0.18853	-9.885E-05	-0.72694	-0.00038115	524.3133934941271	70.095	0.54487	69.828	69.536	70.08	-0.26725					16	12	2	0	0	0	0.03519	1	8141	8141		44.377	8.7589	1	108050			1318	15729	946	946	1407	1407					0.09098906374038052
AKYLPKLASG	10	Unmodified	_AKYLPKLASG_					0	0	0		ENST00000505192.5_1_3:128598473-128627108:+|nuORF;ENSG00000177646|ENST00000308982|ACAD9	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3043212890625	2	524.313492	1046.61243	0.026702	1.4E-05	-0.93322	-0.0004893	-0.90652	-0.0004753	524.3127866942106	70.005	0.62059	69.754	69.483	70.103	-0.25063					24	14	3	0	0	0	0.03519	1	8116	8116		30.318	7.2752	1	165410			1319	15729	946	946	1408	1408					0.09098906374038052
ALAAAAGQAV	10	Unmodified	_ALAAAAGQAV_					0	0	0			REV__ENST00000528399.1_1_11:111808148-111844979:+|nuORF	REV__ENST00000528399.1_1_11:111808148-111844979:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	421.7400817871094	2	421.74016	841.465767	-0.32137	-0.00013553	0.76618	0.00032313	0.44482	0.0001876	421.7403689261028	22.913	0.59113	22.852	22.52	23.111	-0.060862					27	12	3	0	0	0	0.67706	1	845	845		68.787	6.6794	1	721810	+		1320	24735	947	947	1409	1409					0.03869229208942215
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7613830566406	2	425.760895	849.507237	0.47864	0.00020379	-0.43104	-0.00018352	0.047605	2.0269E-05	425.7606435395615	59.089	1.13	59.089	58.75	59.88	0					89	30	4	0	0	0	0.013222	3	6729	6717;6729;6742		175.51	89.596	1	6636100			1321	7461	948	948	1410;1411;1412	1411					0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.7608337402344	2	425.760895	849.507237	1.5499	0.00065989	-1.3894	-0.00059156	0.16049	6.8331E-05	425.76021826476534	59.279	1.0151	59.092	58.793	59.808	-0.18705					67	27	3	0	0	0	0.013222	3	6732	6720;6732;6743		175.51	89.596	1	7072200			1322	7461	948	948	1413;1414;1415	1414					0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.7614440917969	2	425.760895	849.507237	0.65157	0.00027741	-0.41416	-0.00017633	0.2374	0.00010108	425.7606164269686	58.939	1.3147	59.025	58.666	59.98	0.085682					96	35	4	0	0	0	0.013222	4	6612	6612;6621;6632;6648		175.51	89.596	1	5951300			1323	7461	948	948	1416;1417;1418;1419	1416					0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	425.760895	849.507237	0.26886	0.00011447	-0.19843	-8.4482E-05	0.070431	2.9987E-05	425.7607386942967	59.215	0.52724	59.027	58.779	59.307	-0.18795	-0.011749	0.00039463	NaN	175.51	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521140			1324	7461	948	948							0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	425.760895	849.507237	0.64415	0.00027425	-0.34431	-0.00014659	0.29984	0.00012766	425.76057302328064	59.144	1.026	58.962	58.71	59.736	-0.18133	-0.076083	0.0002704	NaN	175.51	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620610			1325	7461	948	948							0.0764640996825392
ALAAARAGAR	10	Unmodified	_ALAAARAGAR_					0	0	0		ENST00000558588.5_1_15:40583795-40583921:-|nuORF	ENST00000558588.5_1_15:40583795-40583921:-|nuORF	ENST00000558588.5_1_15:40583795-40583921:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2771911621094	2	464.277775	926.540997	0.23403	0.00010866	-2.1417	-0.00099435	-1.9077	-0.0008857	464.27716576533726	49.217	0.82956	49.217	48.864	49.694	0					55	22	4	0	0	0	0.96965	1	5067	5067		49.442	1.5259	1	5579500			1326	16755	949	949	1420	1420					0.07478831460025503
ALAAEAGELPV	11	Unmodified	_ALAAEAGELPV_					0	0	0			REV__ENSG00000277399|ENST00000616987|GPR179	REV__ENSG00000277399|ENST00000616987|GPR179	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2737426757812	2	520.784764	1039.55498	-0.4753	-0.00024753	0.30469	0.00015868	-0.17061	-8.8853E-05	520.7850219177	60.9	1.1281	60.694	60.131	61.259	-0.20599					65	27	4	0	0	0	0.024727	1	6870	6870		31.53	13.205	1	865000	+		1327	29204	950	950	1421	1421					0.036780193777985914
ALAAEAGELPV	11	Unmodified	_ALAAEAGELPV_					0	0	0			REV__ENSG00000277399|ENST00000616987|GPR179	REV__ENSG00000277399|ENST00000616987|GPR179	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2733154296875	2	520.784764	1039.55498	-0.68472	-0.00035659	-0.063983	-3.3321E-05	-0.7487	-0.00038991	520.7850375018794	60.963	0.84066	60.709	60.421	61.262	-0.25373					47	20	3	0	0	0	0.024738	1	6869	6869		34.173	11.13	1	1079400	+		1328	29204	950	950	1422	1422					0.036780193777985914
ALAALASVSA	10	Unmodified	_ALAALASVSA_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2237243652344	2	437.255643	872.496732	-0.39682	-0.00017351	2.4099	0.0010537	2.013	0.00088021	437.25655470292946	25.884	0.79763	25.861	25.526	26.324	-0.023087					33	18	3	0	0	0	0.03519	1	1256	1256		35.618	7.364	1	209970			1329	5909	951	951	1423	1423					0.05538382523184282
ALAALKLIFNQ	11	Unmodified	_ALAALKLIFNQ_					0	0	0		ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.8664245605469	3	401.248291	1200.72304	0.58243	0.0002337	-0.28766	-0.00011542	0.29476	0.00011827	401.24808333387097	43.202	0.36049	43.09	42.927	43.288	-0.11253					22	9	3	0	0	0	0.024743	1	3942	3942		23.378	18.236	1	248410			1330	10243	952	952	1424	1424					0.130711263622743
ALAALLGLCL	10	Unmodified	_ALAALLGLCL_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.277587890625	2	479.293714	956.572874	0.1814	8.6943E-05	3.7227	0.0017843	3.9041	0.0018712	479.29545281882486	82.794	0.21723	82.614	82.462	82.679	-0.18079					5	4	2	0	0	0	0.03519	1	9971	9971		26.796	5.0938	1	66490	+		1331	21500	953	953	1425	1425					0.0928506309895738
ALAARALAA	9	Unmodified	_ALAARALAA_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.2585144042969	2	414.25852	826.502486	-0.75477	-0.00031267	0.45639	0.00018906	-0.29838	-0.00012361	414.2586909273573	38.818	1.3286	38.597	38.256	39.584	-0.22149					81	34	4	0	0	0	0.17455	2	3239	3214;3239		94.006	11.009	1	10029000	+		1332	22253	954	954	1426;1427	1427					0.08229525825504425
ALAARALAA	9	Unmodified	_ALAARALAA_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.25872802734375	2	414.25852	826.502486	0.1277	5.2899E-05	-0.27035	-0.00011199	-0.14265	-5.9094E-05	414.2583606313065	38.807	0.77727	38.582	38.282	39.059	-0.2257					64	20	5	0	0	0	0.17455	1	3213	3213		94.006	11.701	1	9651000	+		1333	22253	954	954	1428	1428					0.08229525825504425
ALAASAPVLA	10	Unmodified	_ALAASAPVLA_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	2	442.26601	882.517468	-0.26811	-0.00011858	0.62717	0.00027738	0.35906	0.0001588	442.26620175110804	40.683	0.51109	40.458	40.259	40.77	-0.225					22	13	2	0	0	0	0.03519	1	3519	3519		53.351	25.469	1	393260			1334	8693	955	955	1429	1429					0.07150972902843478
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7610778808594	2	450.761092	899.507631	-0.19164	-8.6383E-05	-1.6931	-0.00076317	-1.8847	-0.00084955	450.7606286892763	38.85	2.0673	38.85	38.247	40.314	0					155	56	5	0	0	0	0.014988	9	3319	3259;3271;3283;3295;3307;3319;3331;3345;3359		161.9	37.577	1	139680000			1335	2184	956	956	1430;1431;1432;1433;1434;1435;1436;1437;1438	1435					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.7610168457031	2	450.761092	899.507631	-0.30836	-0.000139	-1.7355	-0.00078229	-2.0439	-0.00092129	450.76061454673373	38.853	2.0204	38.754	38.166	40.186	-0.098751					168	54	6	0	0	0	0.014034	8	3301	3253;3265;3277;3289;3301;3314;3326;3339		166.68	37.817	1	138210000			1336	2184	956	956	1439;1440;1441;1442;1443;1444;1445;1446	1443					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.76092529296875	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.821	1	38.849	38.349	39.349	0.027275								0	0	0	0.12136	1	3228	3228		87.696	16.401	1				1337	2184	956	956	1447	1447					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.7606506347656	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.886	1	38.913	38.413	39.413	0.027275								0	0	0	0.014478	1	3238	3238		139.97	28.322	1				1338	2184	956	956	1448	1448					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.7605895996094	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.96	1	38.983	38.483	39.483	0.023727								0	0	0	0.035202	1	3250	3250		115.49	24.717	1				1339	2184	956	956	1449	1449					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.7606506347656	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.029	1	39.053	38.553	39.553	0.023727								0	0	0	0.05455	1	3262	3262		107.01	13.001	1				1340	2184	956	956	1450	1450					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.76068115234375	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.101	1	39.124	38.624	39.624	0.023727								0	0	0	0.017387	1	3274	3274		134.81	28.396	1				1341	2184	956	956	1451	1451					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.760986328125	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.172	1	39.196	38.696	39.696	0.023727								0	0	0	0.014478	1	3286	3286		139.97	37.197	1				1342	2184	956	956	1452	1452					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.7612609863281	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.243	1	39.267	38.767	39.767	0.023727								0	0	0	0.014478	1	3298	3298		139.97	37.197	1				1343	2184	956	956	1453	1453					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.7611083984375	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.331	1	39.355	38.855	39.855	0.023727								0	0	0	0.014478	1	3313	3313		139.97	37.197	1				1344	2184	956	956	1454	1454					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_39_ClassI_Rep-3	3	450.7607727050781	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.408	1	39.431	38.931	39.931	0.023727								0	0	0	0.019922	1	3326	3326		131.03	37.025	1				1345	2184	956	956	1455	1455					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.76123046875	2	450.761092	899.507631	-0.84851	-0.00038247	-1.7648	-0.00079549	-2.6133	-0.001178	450.7607167909632	38.943	2.0225	38.778	38.437	40.459	-0.16458					152	54	6	0	0	0	0.014034	10	3286	3228;3238;3250;3262;3274;3286;3298;3311;3323;3337		195.81	52.795	1	221580000			1346	2184	956	956	1456;1457;1458;1459;1460;1461;1462;1463;1464;1465	1461					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7608642578125	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.885	1	38.662	38.162	39.162	-0.22311								0	0	0	0.010243	1	3241	3241		166.68	37.817	1				1347	2184	956	956	1466	1466					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7605285644531	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.937	1	38.714	38.214	39.214	-0.22311								0	0	0	0.010243	1	3249	3249		166.68	37.817	1				1348	2184	956	956	1467	1467					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7607727050781	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.005	1	38.782	38.282	39.282	-0.22311								0	0	0	0.014478	1	3261	3261		139.97	37.197	1				1349	2184	956	956	1468	1468					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.760498046875	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.072	1	38.848	38.348	39.348	-0.22311								0	0	0	0.016409	1	3273	3273		136.27	36.893	1				1350	2184	956	956	1469	1469					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7606201171875	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.14	1	38.917	38.417	39.417	-0.22311								0	0	0	0.012993	1	3285	3285		161.9	33.037	1				1351	2184	956	956	1470	1470					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7605285644531	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.211	1	38.988	38.488	39.488	-0.22311								0	0	0	0.010243	1	3297	3297		166.68	37.817	1				1352	2184	956	956	1471	1471					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7607116699219	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.284	1	39.061	38.561	39.561	-0.22311								0	0	0	0.010243	1	3309	3309		166.68	37.817	1				1353	2184	956	956	1472	1472					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.76116943359375	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.362	1	39.138	38.638	39.638	-0.22311								0	0	0	0.014314	1	3321	3321		153.04	50.262	1				1354	2184	956	956	1473	1473					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7611083984375	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.435	1	39.212	38.712	39.712	-0.22311								0	0	0	0.035202	1	3333	3333		115.49	27.74	1				1355	2184	956	956	1474	1474					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.76129150390625	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.486	1	39.263	38.763	39.763	-0.22311								0	0	0	0.073652	1	3341	3341		98.629	27.334	1				1356	2184	956	956	1475	1475					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7610168457031	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.52	1	39.297	38.797	39.797	-0.22311								0	0	0	0.05455	1	3346	3346		107.01	35.13	1				1357	2184	956	956	1476	1476					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7608642578125	2	450.761092	899.507631	-0.086478	-3.8981E-05	-2.5511	-0.0011499	-2.6375	-0.0011889	450.7603680076884	39.046	2.1509	38.82	38.443	40.594	-0.2257					156	57	6	0	0	0	0.014034	12	3279	3222;3231;3243;3255;3267;3279;3291;3303;3316;3322;3329;3334		166.68	45.681	1	208940000			1358	2184	956	956	1477;1478;1479;1480;1481;1482;1483;1484;1485;1486;1487;1488	1482					0.053857848974644185
ALADIVWRA	9	Unmodified	_ALADIVWRA_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7931823730469	2	507.790184	1013.56581	0.072023	3.6572E-05	0.76816	0.00039006	0.84018	0.00042664	507.7900716610495	68.528	0.81544	68.236	67.819	68.634	-0.29267					68	20	5	0	0	0	0.19099	1	8187	8187		90.37	34.866	1	1316200			1359	2763	957	957	1489	1489					0.05957466542736256
ALADLQEAV	9	Unmodified	_ALADLQEAV_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2508239746094	2	465.250557	928.486562	-1.2841	-0.00059743	1.6912	0.00078681	0.40705	0.00018938	465.25117129562034	64.975	0.87646	64.975	64.69	65.566	0					50	24	4	0	0	0	0.027092	1	7676	7676		143.89	39.14	1	2092200			1360	3416	958	958	1490	1490					0.019457747979458873
ALADLQEAV	9	Unmodified	_ALADLQEAV_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2508850097656	2	465.250557	928.486562	-0.93465	-0.00043485	1.2024	0.00055941	0.26773	0.00012456	465.2509886507244	65.312	1.2397	65.039	64.712	65.951	-0.27282					61	33	4	0	0	0	0.077175	2	7683	7683;7695		118.74	30.989	1	2351500			1361	3416	958	958	1491;1492	1491					0.019457747979458873
ALADLQEAV	9	Unmodified	_ALADLQEAV_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2510070800781	2	465.250557	928.486562	0.25632	0.00011926	0.02761	1.2846E-05	0.28394	0.0001321	465.2504599739404	64.99	1.2298	65.027	64.364	65.594	0.037384					53	33	2	0	0	0	0.03666	1	7591	7591		136.27	37.639	1	2367400			1362	3416	958	958	1493	1493					0.019457747979458873
ALADTLVLL	9	Unmodified	_ALADTLVLL_					0	0	0		nc|ENSG00000125510|P41146-2|OPRL1;ENSG00000125510|ENST00000336866|OPRL1	nc|ENSG00000125510|P41146-2|OPRL1	nc|ENSG00000125510|P41146-2|OPRL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7642822265625	2	464.789318	927.564084	-1.2854	-0.00059744	3.3058	0.0015365	2.0204	0.00093906	464.7907764840578	38.199	0.58581	38.199	37.969	38.555	0					24	16	2	0	0	0	0.024183	1	3203	3203		40.573	10.069	1	192450			1363	4115	959	959	1494	1494					0.09740412734140591
ALADTLVLL	9	Unmodified	_ALADTLVLL_					0	0	0		nc|ENSG00000125510|P41146-2|OPRL1;ENSG00000125510|ENST00000336866|OPRL1	nc|ENSG00000125510|P41146-2|OPRL1	nc|ENSG00000125510|P41146-2|OPRL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.789318	927.564084	-0.48752	-0.00022659	2.0723	0.00096316	1.5847	0.00073657	464.7901101157498	37.972	0.38038	38	37.817	38.197	0.027275	-0.05717	-0.00091057	NaN	40.573	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85297			1364	4115	959	959							0.09740412734140591
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.25341796875	2	494.253297	986.492041	-0.02136	-1.0557E-05	0.0054495	2.6934E-06	-0.015911	-7.8639E-06	494.25323021866853	56.919	0.88872	56.919	56.608	57.496	0					80	24	5	0	0	0	0.11092	3	6393	6371;6383;6393		108.09	27.346	1	9030600			1365	4286	960	960	1495;1496;1497	1497					-0.0017454641023277873
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.25323486328125	2	494.253297	986.492041	-0.035356	-1.7475E-05	-0.078183	-3.8642E-05	-0.11354	-5.6117E-05	494.25317177831846	57.089	1.195	56.925	56.35	57.545	-0.16431					93	32	5	0	0	0	0.043667	4	6376	6353;6364;6376;6388		131.03	56.776	1	7676600			1366	4286	960	960	1498;1499;1500;1501	1500					-0.0017454641023277873
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.253173828125	2	494.253297	986.492041	-0.22049	-0.00010898	0.26949	0.0001332	0.049001	2.4219E-05	494.2533293966073	56.778	0.88516	56.876	56.546	57.432	0.097897					84	24	6	0	0	0	0.043667	2	6269	6269;6282		131.03	31.656	1	7642100			1367	4286	960	960	1502;1503	1502					-0.0017454641023277873
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.2535095214844	2	494.253297	986.492041	-0.78447	-0.00038773	0.8509	0.00042056	0.066431	3.2834E-05	494.25372524143427	57.142	1.0092	56.975	56.637	57.646	-0.1672					84	26	5	0	0	0	0.015901	3	6216	6203;6216;6227		157.33	45.681	1	13711000			1368	4286	960	960	1504;1505;1506	1505					-0.0017454641023277873
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.2545471191406	2	494.253297	986.492041	0.30025	0.0001484	-0.27383	-0.00013534	0.026421	1.3059E-05	494.2531328989673	57.193	1.0662	56.991	56.672	57.738	-0.20209					83	28	5	0	0	0	0.015901	3	6225	6216;6225;6237		157.33	49.242	1	14096000			1369	4286	960	960	1507;1508;1509	1508					-0.0017454641023277873
ALAEEVEQV	9	Unmodified	_ALAEEVEQV_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.25347900390625	2	494.253297	986.492041	-0.22824	-0.00011281	0.31468	0.00015553	0.086439	4.2723E-05	494.2534159508552	57.242	0.93459	57.017	56.738	57.672	-0.2248					80	24	5	0	0	0	0.043667	4	6220	6211;6220;6231;6243		131.03	34.841	1	11968000			1370	4286	960	960	1510;1511;1512;1513	1511					-0.0017454641023277873
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.80517578125	2	514.802957	1027.59136	-0.04149	-2.1359E-05	-1.3725	-0.00070655	-1.414	-0.00072791	514.8025342502971	58.158	0.69933	58.158	57.796	58.495	0					58	18	4	0	0	0	0.069016	4	6603	6567;6579;6590;6603		143.37	35.736	1	6722700			1371	3555	961	961	1514;1515;1516;1517	1517					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8037109375	2	514.802957	1027.59136	-0.55363	-0.00028501	-0.1225	-6.3065E-05	-0.67614	-0.00034808	514.802947802064	58.41	0.98222	58.223	57.919	58.902	-0.18705					53	26	3	0	0	0	0.029455	4	6583	6583;6594;6605;6617		155.58	37.774	1	7396700			1372	3555	961	961	1518;1519;1520;1521	1518					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.8040161132812	2	514.802957	1027.59136	-0.69338	-0.00035695	0.53531	0.00027558	-0.15807	-8.1377E-05	514.8034373478815	58.055	0.61286	58.146	57.835	58.448	0.091217					44	16	3	0	0	0	0.10407	3	6484	6473;6484;6508		134.77	19.272	1	7336000			1373	3555	961	961	1522;1523;1524	1523					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8042602539062	2	514.802957	1027.59136	-0.099296	-5.1118E-05	-0.29941	-0.00015414	-0.39871	-0.00020526	514.8027456956388	58.421	0.61669	58.243	58.017	58.634	-0.17775					33	14	3	0	0	0	0.41983	1	6417	6417		96.665	16.21	1	1346600			1374	3555	961	961	1525	1525					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.802957	1027.59136	0.018539	9.5441E-06	-0.4359	-0.0002244	-0.41736	-0.00021486	514.8026898562221	58.318	0.51698	58.128	58.02	58.537	-0.19018	-0.05175	-0.0001002	NaN	155.58	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042800			1375	3555	961	961							0.0786689627452688
ALAEKHKS	8	Unmodified	_ALAEKHKS_					0	0	0			REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7878723144531	2	442.253434	882.492316	0.28787	0.00012731	1.7583	0.00077761	2.0462	0.00090492	442.2538409765352	40.451	0.48808	40.451	40.099	40.587	0					23	13	3	0	0	0	0.027866	1	3554	3554		27.882	1.1893	1	118680	+		1376	20333	962	962	1526	1526					0.046369181002773985
ALAEKVKEA	9	Unmodified	_ALAEKVKEA_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.25946044921875	2	479.782025	957.549496	-0.80132	-0.00038446	2.1375	0.0010255	1.3361	0.00064106	479.78280047966683	25.113	1.1935	25.078	24.321	25.515	-0.034395					67	27	4	0	0	0	0.024359	1	1144	1144		56.434	5.2411	1	367800			1377	8896	963	963	1527	1527					0.0690234058599799
ALAEKVKEA	9	Unmodified	_ALAEKVKEA_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.782025	957.549496	0.2138	0.00010258	1.1403	0.00054708	1.3541	0.00064966	479.7823301468187	25.003	0.80759	25.082	24.731	25.539	0.078806	0.0090483	-0.00015245	NaN	65.465	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368620			1378	8896	963	963							0.0690234058599799
ALAFEPLS	8	Unmodified	_ALAFEPLS_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;SORL1|p.M1581Cfs*34|1|0.09|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2293395996094	2	424.231636	846.448719	-0.80056	-0.00033962	-3.4702	-0.0014722	-4.2708	-0.0018118	424.23012630916554	24.102	1.3085	24.102	23.566	24.874	0					70	29	3	0	0	0	0.61897	1	1032	1032		74.517	0.26156	1	2836600			1379	5142	964	964	1528	1528					0.01935308603140129
ALAFPSPNI	9	Unmodified	_ALAFPSPNI_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7778625488281	2	465.258185	928.501818	0.26177	0.00012179	0.20715	9.6379E-05	0.46892	0.00021817	465.2575127424087	81.909	0.1951	81.779	81.705	81.9	-0.13075					7	4	2	0	0	0	0.024466	1	10189	10189		31.53	7.3271	1	30988			1380	6023	965	965	1529	1529					0.034706863857991266
ALAGAAVTR	9	Unmodified	_ALAGAAVTR_					0	0	0			REV__ENSG00000129009|ENST00000249842|ISLR	REV__ENSG00000129009|ENST00000249842|ISLR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2484130859375	2	415.248152	828.481751	-0.74758	-0.00031043	0.6482	0.00026917	-0.099381	-4.1268E-05	415.2484510520065	35.786	1.2836	35.744	35.366	36.649	-0.042458					86	34	4	0	0	0	0.20304	1	2788	2788		88.643	0.88857	1	19276000	+		1381	23026	966	966	1530	1530					0.060649354458519156
ALAGAHKRVV	10	Unmodified	_ALAGAHKRVV_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3144226074219	2	511.3169	1020.61925	-1.2788	-0.00065385	0.89716	0.00045873	-0.3816	-0.00019512	511.31725009157276	22.363	1.2903	22.437	21.594	22.884	0.073954					60	26	4	0	0	0	1.1217	1	751	751		21.96	0	1	461210			1382	8051	967	967	1531	1531					0.10976264045280004
ALAGCLALL	9	Carbamidomethyl (C)	_ALAGC(Carbamidomethyl (C))LALL_	ALAGC(1)LALL		ALAGC(86)LALL		0	1	0			REV__ENSG00000109472|ENST00000402744|CPE	REV__ENSG00000109472|ENST00000402744|CPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2480773925781	2	451.262413	900.510274	-0.59909	-0.00027035	-3.3339	-0.0015045	-3.933	-0.0017748	451.2609566406098	39.064	1.6923	38.841	38.497	40.189	-0.22311					102	44	5	0	0	0	0.023092	1	3396	3396		85.909	17.424	1	78956000	+		1383	21795	968	968	1532	1532	280				0.05603917030771299
ALAGNDRNI	9	Unmodified	_ALAGNDRNI_					0	0	0		nc|ENSG00000135052|Q8NBJ4-2|GOLM1;ENSG00000135052|ENST00000388712|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	nc|ENSG00000135052|Q8NBJ4-2|GOLM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.24932861328125	2	472.251423	942.488293	-1.1101	-0.00052424	-2.3685	-0.0011185	-3.4785	-0.0016427	472.24997052810795	20.997	2.383	20.785	19.936	22.319	-0.2128					113	48	4	0	0	0	0.5973	1	637	637		52.937	1.744	1	288370			1384	4852	969	969	1533	1533					0.01474828606558276
ALAGPRGLGR	10	Unmodified	_ALAGPRGLGR_					0	0	0			REV__ENSG00000016391|ENST00000315251|CHDH	REV__ENSG00000016391|ENST00000315251|CHDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2701110839844	2	484.293425	966.572297	-0.48173	-0.0002333	0.070062	3.3931E-05	-0.41167	-0.00019937	484.29332721244293	27.333	0.81916	27.32	27.101	27.92	-0.012981					50	21	3	0	0	0	0.03519	1	1463	1463		21.96	3.6355	1	700660	+		1385	19972	970	970	1534	1534					0.08767404494130915
ALAGRAPKG	9	Unmodified	_ALAGRAPKG_					0	0	0			REV__ENST00000275732.5_1_7:100286697-100286841:-|nuORF	REV__ENST00000275732.5_1_7:100286697-100286841:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7281494140625	2	420.756144	839.497735	-0.79346	-0.00033385	0.85698	0.00036058	0.06352	2.6726E-05	420.7568997465515	25.446	0.31754	25.412	25.238	25.556	-0.034395					12	7	2	0	0	0	0.024535	1	1189	1189		25.45	0	1	79154	+		1386	29848	971	971	1535	1535					0.07156641682740883
ALAGRRSP	8	Unmodified	_ALAGRRSP_					0	0	0		ENST00000556578.1_1_14:73739172-73739532:-|nuORF	ENST00000556578.1_1_14:73739172-73739532:-|nuORF	ENST00000556578.1_1_14:73739172-73739532:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.2585144042969	2	414.245944	826.477334	-0.76568	-0.00031718	-3.9876	-0.0016519	-4.7533	-0.001969	414.2457225927367	38.818	0.31277	38.597	38.375	38.688	-0.22149					12	7	2	0	0	0	0.027866	1	3239	3239		65.803	0	1	96538			1387	16714	972	972	1536	1536					0.057154710229383454
ALAGVSFEI	9	Unmodified	_ALAGVSFEI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.75	2	453.750193	905.485833	0.029338	1.3312E-05	0.18714	8.4914E-05	0.21648	9.8226E-05	453.75014854134673	81.609	1.016	81.609	81.138	82.154	0					52	24	3	0	0	0	0.049585	3	10170	10158;10170;10182		128.86	52.087	1	1590600			1388	2483	973	973	1537;1538;1539	1538					0.029309801489034726
ALAGVSFEI	9	Unmodified	_ALAGVSFEI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	453.75006103515625	2	453.750193	905.485833	-0.10352	-4.6972E-05	0.33529	0.00015214	0.23177	0.00010516	453.75019994725415	81.746	0.80601	81.616	81.217	82.023	-0.13075					55	19	4	0	0	0	0.08613	2	10147	10147;10159		115.46	23.329	1	1633900			1389	2483	973	973	1540;1541	1540					0.029309801489034726
ALAGVSFEI	9	Unmodified	_ALAGVSFEI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.7501220703125	2	453.750193	905.485833	-0.37884	-0.0001719	0.81639	0.00037044	0.43755	0.00019854	453.75029638720855	81.561	1.0232	81.585	81.248	82.271	0.023911					72	24	4	0	0	0	0.074956	3	10100	10086;10100;10112		119.56	45.582	1	2271500			1390	2483	973	973	1542;1543;1544	1543					0.029309801489034726
ALAGVSFEI	9	Unmodified	_ALAGVSFEI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	453.750193	905.485833	0.5235	0.00023754	-0.31317	-0.0001421	0.21033	9.5436E-05	453.7499170628044	81.655	0.67136	81.426	81.105	81.777	-0.2289	-0.1093	-0.00058019	NaN	128.86	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309930			1391	2483	973	973							0.029309801489034726
ALAGVSFEI	9	Unmodified	_ALAGVSFEI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	453.750193	905.485833	0.19411	8.8076E-05	0.72737	0.00033004	0.92148	0.00041812	453.75003981801166	81.634	0.62979	81.441	81.131	81.76	-0.19334	-0.094782	0.0003641	NaN	128.86	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280810			1392	2483	973	973							0.029309801489034726
ALAHLAASPQ	10	Unmodified	_ALAHLAASPQ_					0	0	0		ENST00000597578.1_1_16:86524040-86542451:-|nuORF	ENST00000597578.1_1_16:86524040-86542451:-|nuORF	ENST00000597578.1_1_16:86524040-86542451:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.78094482421875	2	489.771991	977.529429	-0.47966	-0.00023492	0.49256	0.00024124	0.012901	6.3186E-06	489.77220086605564	22.003	0.75522	22.003	21.63	22.385	0					34	15	3	0	0	0	0.94316	1	738	738		51.193	1.1682	1	435400			1393	17451	974	974	1545	1545					0.03976589646026696
ALAIFGLCCF	10	Unmodified	_ALAIFGLCCF_					0	0	0			REV__ENSG00000244242|ENST00000340134|IFITM10	REV__ENSG00000244242|ENST00000340134|IFITM10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.28662109375	2	529.264099	1056.51364	-0.47214	-0.00024989	-3.6461	-0.0019297	-4.1182	-0.0021796	529.2620661809116	35.877	0.20554	35.661	35.508	35.713	-0.21595					8	5	2	0	0	0	0.03519	1	2729	2729		35.201	16.876	1	473160	+		1394	28997	975	975	1546	1546					-0.012351561868854333
ALAIRLPLL	9	Unmodified	_ALAIRLPLL_					0	0	0			REV__ENSG00000158669|ENST00000396987|GPAT4	REV__ENSG00000158669|ENST00000396987|GPAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.27691650390625	2	490.33677	978.658987	0.13223	6.484E-05	0.19365	9.4956E-05	0.32589	0.0001598	490.3367015025274	76.418	0.83211	76.167	75.867	76.699	-0.25163					46	19	4	0	0	0	0.024183	1	9110	9110		50.025	9.4519	1	917590	+		1395	25210	976	976	1547	1547					0.16880390995981998
ALAITYSI	8	Unmodified	_ALAITYSI_					0	0	0		ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.24615478515625	2	426.247286	850.48002	0.53403	0.00022763	-3.626	-0.0015456	-3.092	-0.0013179	426.24566550272664	89.556	2.4252	89.419	88.44	90.865	-0.13762					100	57	3	0	0	0	1.0239	1	10947	10947		33.516	6.7195	1	549880			1396	32	977	977	1548	1548					0.04879881637236849
ALAKANLSFS	10	Unmodified	_ALAKANLSFS_					0	0	0			REV__ENST00000323013.6_1_22:42908285-42908810:-|nuORF	REV__ENST00000323013.6_1_22:42908285-42908810:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.78985595703125	2	511.287474	1020.5604	-0.40934	-0.00020929	0.72867	0.00037256	0.31933	0.00016327	511.7896589614839	22.829	1.5882	22.754	22.082	23.67	-0.075296					74	35	4	0	0	0	1.0616	1	821	821		37.812	4.9991	1	529150	+		1397	30367	978	978	1549	1549					0.05093742960286818
ALAKAVFPY	9	Unmodified	_ALAKAVFPY_					0	0	0		ENST00000244061.5_1_20:48568687-48568888:+|nuORF	ENST00000244061.5_1_20:48568687-48568888:+|nuORF	ENST00000244061.5_1_20:48568687-48568888:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.26318359375	2	490.284203	978.553853	0.64099	0.00031427	-0.096149	-4.714E-05	0.54485	0.00026713	490.2840737174359	104.62	0.42352	104.46	104.3	104.72	-0.16484					12	10	2	0	0	0	0.024535	1	13023	13023		18.324	3.6603	1	62717			1398	11298	979	979	1550	1550					0.06371849799552365
ALAKAVFPY	9	Unmodified	_ALAKAVFPY_					0	0	0		ENST00000244061.5_1_20:48568687-48568888:+|nuORF	ENST00000244061.5_1_20:48568687-48568888:+|nuORF	ENST00000244061.5_1_20:48568687-48568888:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.284203	978.553853	-0.44548	-0.00021841	0.34114	0.00016726	-0.10433	-5.1153E-05	490.28413296341097	104.58	0.32387	104.45	104.23	104.56	-0.12927	-0.0076373	-4.5113E-05	NaN	18.324	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49126			1399	11298	979	979							0.06371849799552365
ALAKPPLLL	9	Unmodified	_ALAKPPLLL_					0	0	0		ENST00000375412.9_2_9:96215052-96215148:-|nuORF	ENST00000375412.9_2_9:96215052-96215148:-|nuORF	ENST00000375412.9_2_9:96215052-96215148:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.305908203125	2	468.318046	934.621539	-0.2676	-0.00012532	-0.18018	-8.4381E-05	-0.44778	-0.00020971	468.3176499339283	62.21	0.31626	61.984	61.803	62.119	-0.22663					9	8	2	0	0	0	0.024325	1	7172	7172		50.025	0	1	178260			1400	13160	980	980	1551	1551					0.1516129973038005
ALALALAVLC	10	Unmodified	_ALALALAVLC_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2970275878906	2	479.293714	956.572874	0.79732	0.00038215	2.8089	0.0013463	3.6062	0.0017284	479.29488529898623	102.08	0.50771	101.95	101.72	102.23	-0.1293					22	12	2	0	0	0	1.1309	1	12671	12671		26.796	5.0938	1	193090			1401	3505	981	981	1552	1552					0.09285063098968749
ALALGGRGEG	10	Unmodified	_ALALGGRGEG_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.7481994628906	2	450.748516	899.482479	-0.17333	-7.8127E-05	-1.9523	-0.00087998	-2.1256	-0.00095811	450.7484561614279	30.966	0.9448	31.039	30.665	31.609	0.072166					71	22	5	0	0	0	0.50466	1	1999	1999		87.754	2.8388	1	3115900	+		1402	23546	982	982	1553	1553					0.028717300948983393
ALALRATPS	9	Unmodified	_ALALRATPS_					0	0	0		nc|ENSG00000293316|O95397|PLEKHA8P1;ENST00000256692.5_1_12:45566975-45568244:-|nuORF	nc|ENSG00000293316|O95397|PLEKHA8P1	nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2687683105469	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.31247	1	3149	3149		73.975	13.003	1	141320000			1403	11400	983	983	1554	1554					0.07029491134358068
ALALRATPS	9	Unmodified	_ALALRATPS_					0	0	0		nc|ENSG00000293316|O95397|PLEKHA8P1;ENST00000256692.5_1_12:45566975-45568244:-|nuORF	nc|ENSG00000293316|O95397|PLEKHA8P1	nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2681884765625	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.67308	1	3124	3124		47.916	1.9636	1	125590000			1404	11400	983	983	1555	1555					0.07029491134358068
ALAMGADRGH	10	Unmodified	_ALAMGADRGH_					0	0	0		chr19:51347058-51353251|120|22.85|0.43|5.73|-|2|ETFB,None|1	chr19:51347058-51353251|120|22.85|0.43|5.73|-|2|ETFB,None|1	chr19:51347058-51353251|120|22.85|0.43|5.73|-|2|ETFB,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.821044921875	2	499.74545	997.476348	0.27949	0.00013967	2.2953	0.001147	2.5747	0.0012867	499.7464477519893	67.502	0.93532	67.502	67.205	68.14	0					31	23	2	0	0	0	0.03519	1	8053	8053		27.882	0	1	207260			1405	364	984	984	1556	1556					-0.022491114082640706
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7695007324219	2	463.768917	925.523281	0.15522	7.1984E-05	0.091399	4.2388E-05	0.24661	0.00011437	463.76875786690334	63.399	0.93768	63.399	62.98	63.917	0					79	25	5	0	0	0	0.013995	4	7411	7401;7411;7423;7435		181.81	91.436	1	4338600			1406	2014	985	985	1557;1558;1559;1560	1558					0.05754071414514783
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7689208984375	2	463.768917	925.523281	0.1264	5.862E-05	-0.071334	-3.3082E-05	0.055066	2.5538E-05	463.7687760747321	63.64	1.0518	63.388	62.935	63.987	-0.25141					60	28	3	0	0	0	0.015064	3	7412	7412;7422;7437		190.52	94.703	1	5058200			1407	2014	985	985	1561;1562;1563	1561					0.05754071414514783
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7688293457031	2	463.768917	925.523281	2.0339	0.00094328	-1.9747	-0.00091582	0.05922	2.7465E-05	463.76786687097905	63.38	1.4551	63.434	62.888	64.343	0.054104					80	39	4	0	0	0	0.014013	3	7339	7317;7328;7339		166.78	48.039	1	4354700			1408	2014	985	985	1564;1565;1566	1566					0.05754071414514783
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.768917	925.523281	-0.027431	-1.2721E-05	-0.24016	-0.00011138	-0.26759	-0.0001241	463.76878652016785	63.72	0.64751	63.493	63.135	63.782	-0.22773	0.031714	0.0003366	NaN	181.81	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326990			1409	2014	985	985							0.05754071414514783
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.768917	925.523281	-0.062267	-2.8878E-05	0.60969	0.00028275	0.54742	0.00025388	463.76888155497386	63.709	0.65757	63.517	63.263	63.921	-0.19243	0.055772	0.0011249	NaN	181.81	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288280			1410	2014	985	985							0.05754071414514783
ALANQIPTV	9	Unmodified	_ALANQIPTV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.768917	925.523281	0.22765	0.00010558	-0.51676	-0.00023966	-0.28911	-0.00013408	463.76872688495376	63.794	0.52015	63.535	63.313	63.833	-0.25824	0.074407	8.0052E-05	NaN	181.81	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282280			1411	2014	985	985							0.05754071414514783
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.73907470703125	2	405.739628	809.464704	0.1958	7.9443E-05	-0.27388	-0.00011112	-0.078078	-3.1679E-05	405.7393835161285	62.469	0.94591	62.469	62.25	63.196	0					51	26	3	0	0	0	0.67308	1	7278	7278		47.916	1.9636	1	2975700			1412	3654	986	986	1567	1567					0.05235014840036456
ALAPGLPTA	9	Unmodified	_ALAPGLPTA_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7396545410156	2	405.739628	809.464704	1.1076	0.0004494	-1.279	-0.00051894	-0.17139	-6.9541E-05	405.7389405805362	62.403	0.93373	62.466	62.201	63.135	0.062763					51	23	3	0	0	0	0.40179	1	7189	7189		65.803	2.8247	1	3524300			1413	3654	986	986	1568	1568					0.05235014840036456
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.26690673828125	2	427.266345	852.518136	0.005114	2.185E-06	-0.050913	-2.1754E-05	-0.045799	-1.9568E-05	427.2663599398137	42.477	1.4338	42.477	42.187	43.621	0					94	39	4	0	0	0	0.22754	4	3919	3898;3907;3919;3931		85.359	30.465	1	20246000			1414	4030	987	987	1569;1570;1571;1572	1571					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.26666259765625	2	427.266345	852.518136	-0.053335	-2.2788E-05	0.12029	5.1397E-05	0.066958	2.8609E-05	427.26644015018843	42.643	1.4359	42.504	42.209	43.645	-0.13929					107	39	5	0	0	0	0.22754	4	3925	3905;3913;3925;3937		85.359	33.06	1	19552000			1415	4030	987	987	1573;1574;1575;1576	1575					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2665710449219	2	427.266345	852.518136	0.34615	0.0001479	-0.24971	-0.00010669	0.096439	4.1205E-05	427.2662868648772	42.561	1.3692	42.587	42.255	43.624	0.026012					97	37	4	0	0	0	0.17455	5	3868	3848;3857;3868;3880;3895		94.006	35.224	1	19703000			1416	4030	987	987	1577;1578;1579;1580;1581	1579					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.2663879394531	2	427.266345	852.518136	0.25004	0.00010683	-0.046176	-1.9729E-05	0.20386	8.7104E-05	427.26623757054847	42.631	0.75674	42.508	42.195	42.952	-0.1229					46	19	4	0	0	0	0.43973	1	3854	3854		63.306	13.282	1	2263900			1417	4030	987	987	1582	1582					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.266357421875	2	427.266345	852.518136	-0.053965	-2.3057E-05	0.12855	5.4924E-05	0.074583	3.1867E-05	427.2663019692897	42.779	0.72098	42.542	42.268	42.989	-0.23736					44	18	3	0	0	0	0.43973	1	3870	3870		63.306	13.282	1	2270000			1418	4030	987	987	1583	1583					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.2666931152344	2	427.266345	852.518136	-0.14319	-6.1182E-05	0.14631	6.2512E-05	0.0031126	1.3299E-06	427.26632513910994	42.804	0.76292	42.578	42.298	43.061	-0.22597					45	19	3	0	0	0	0.43973	1	3865	3865		63.306	22.734	1	2079900			1419	4030	987	987	1584	1584					0.08597812342554789
ALAPHQRETVE	11	Unmodified	_ALAPHQRETVE_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|77|2|anti-sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|77|2|anti-sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|77|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.5576477050781	3	417.554443	1249.6415	-0.5199	-0.00021709	1.6879	0.00070477	1.168	0.00048769	417.5550873174149	23.688	1.3021	23.627	23.308	24.61	-0.060862					77	29	4	0	0	0	0.024759	1	1066	1066		23.378	4.1152	1	689140			1420	38031	988	988	1585	1585					0.02666398932365155
ALAPILQT	8	Unmodified	_ALAPILQT_					0	0	0			REV__nc|ENSG00000064655|O00167-2|EYA2	REV__nc|ENSG00000064655|O00167-2|EYA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8816833496094	2	413.755278	825.496004	-1.1433	-0.00047303	-4.1448	-0.0017149	-5.288	-0.002188	413.7553381488033	29.211	0.12989	28.966	28.881	29.011	-0.24524					4	2	2	0	0	0	0.027866	1	1768	1768		6.3127	0	1	6696.4	+		1421	20290	989	989	1586	1586					0.07627587874128494
ALAPLLGAL	9	Unmodified	_ALAPLLGAL_					0	0	0			REV__ENSG00000136457|ENST00000508540|CHAD	REV__ENSG00000136457|ENST00000508540|CHAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	419.7737121582031	2	419.773471	837.53239	0.20091	8.4336E-05	0.22868	9.5995E-05	0.42959	0.00018033	419.7734366172029	78.773	1.1202	78.58	78.216	79.337	-0.1921					80	26	4	0	0	0	0.084323	1	9709	9709		116.12	0	1	3080000	+		1422	23658	990	990	1587	1587					0.10712464770847419
ALAPLLGAL	9	Unmodified	_ALAPLLGAL_					0	0	0			REV__ENSG00000136457|ENST00000508540|CHAD	REV__ENSG00000136457|ENST00000508540|CHAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	419.7737121582031	2	419.773471	837.53239	0.29577	0.00012416	0.14662	6.1549E-05	0.44239	0.0001857	419.77341125769897	78.689	0.92982	78.457	78.176	79.106	-0.23141					61	21	4	0	0	0	0.32257	1	9415	9415		72.62	0	1	871390	+		1423	23658	990	990	1588	1588					0.10712464770847419
ALAPLLGAL	9	Unmodified	_ALAPLLGAL_					0	0	0			REV__ENSG00000136457|ENST00000508540|CHAD	REV__ENSG00000136457|ENST00000508540|CHAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	419.773681640625	2	419.773471	837.53239	0.35965	0.00015097	0.0057859	2.4288E-06	0.36543	0.0001534	419.773344675942	78.657	1.1043	78.501	78	79.104	-0.15591					67	25	4	0	0	0	0.14584	1	9382	9382		100.36	0	1	828200	+		1424	23658	990	990	1589	1589					0.10712464770847419
ALAPLLRTY	9	Unmodified	_ALAPLLRTY_					0	0	0			REV__nc|ENSG00000243989|Q03154-2|ACY1	REV__nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3060607910156	2	509.30821	1016.60187	-1.5235	-0.00077591	-2.7579	-0.0014046	-4.2813	-0.0021805	509.30666606233405	91.952	1.3811	91.803	91.353	92.734	-0.1487					100	32	4	0	0	0	0.94809	2	11254	11254;11275		29.15	3.5755	1	3302400	+		1425	28995	991	991	1590;1591	1590					0.09422923719603205
ALAPNAGGAW	10	Unmodified	_ALAPNAGGAW_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2506408691406	2	464.237784	926.461016	-0.56427	-0.00026196	-2.8119	-0.0013054	-3.3761	-0.0015673	464.2365592338805	48.06	0.42862	47.907	47.764	48.193	-0.15301					21	12	3	0	0	0	0.03519	1	4892	4892		57.811	22.659	1	1506700	+		1426	25112	992	992	1592	1592					-0.005156549338153127
ALAPPMIK	8	Unmodified	_ALAPPMIK_					0	0	0			REV__nc|ENSG00000101955|P78539-3|SRPX	REV__nc|ENSG00000101955|P78539-3|SRPX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.74407958984375	2	420.754224	839.493896	-0.35935	-0.0001512	-0.72041	-0.00030311	-1.0798	-0.00045431	420.753653739626	27.498	0.18018	27.485	27.427	27.608	-0.012983					7	4	2	0	0	0	0.027866	1	1492	1492		26.796	16.611	1	78293	+		1427	21268	993	993	1593	1593					0.06772835864683202
ALAPSMLKI	9	Unmodified	_ALAPSMLKI_					0	0	0		ENSG00000196834|ENST00000451531|POTEI	ENSG00000196834|ENST00000451531|POTEI	ENSG00000196834|ENST00000451531|POTEI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.28851318359375	2	472.285889	942.557224	-0.12415	-5.8633E-05	3.6131	0.0017064	3.4889	0.0016478	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	0.87448	1	11870	11870		34.173	0.65696	1	53299000			1428	9925	994	994	1594	1594					0.08364776581913702
ALAPSNGVPV	10	Unmodified	_ALAPSNGVPV_					0	0	0			REV__ENSG00000129173|ENST00000250024|E2F8	REV__ENSG00000129173|ENST00000250024|E2F8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7609558105469	2	462.761092	923.507631	-0.29482	-0.00013643	-0.28035	-0.00012973	-0.57516	-0.00026616	462.7609774003344	48.965	1.5588	48.812	48.505	50.064	-0.15277					124	42	5	0	0	0	0.60198	1	5043	5043		76.774	2.7994	1	33715000	+		1429	23035	995	995	1595	1595					0.04281784897477792
ALAPVATVKYT	11	Unmodified	_ALAPVATVKYT_					0	0	0		nc|ENSG00000182333|P07098-4|LIPF;nc|ENSG00000182333|P07098-3|LIPF;nc|ENSG00000182333|P07098-2|LIPF;ENSG00000182333|ENST00000238983|LIPF	nc|ENSG00000182333|P07098-4|LIPF	nc|ENSG00000182333|P07098-4|LIPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3300170898438	2	567.331882	1132.64921	-0.57331	-0.00032526	-2.9862	-0.0016942	-3.5595	-0.0020194	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.0392	1	10843	10843		28.081	6.1216	1	5699600			1430	18569	996	996	1596	1596					0.0881915819995811
ALAQSEQI	8	Unmodified	_ALAQSEQI_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.23046875	2	430.229625	858.444697	-0.43636	-0.00018774	2.6202	0.0011273	2.1838	0.00093954	430.23057766107627	26.153	0.7541	26.13	25.651	26.405	-0.023088					54	17	4	0	0	0	0.56592	1	1294	1294		79.451	4.4077	1	1552000	+	+	1431	19587	997	997	1597	1597					0.009812191094397349
ALAQSEVK	8	Unmodified	_ALAQSEVK_					0	0	0			REV__ENSG00000121270|ENST00000356608|ABCC11	REV__ENSG00000121270|ENST00000356608|ABCC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5932312011719	2	423.239993	844.465432	-0.35646	-0.00015087	-1.3809	-0.00058446	-1.7374	-0.00073533	423.23940388166534	51.037	0.71472	50.888	50.689	51.404	-0.14916					28	19	2	0	0	0	0.027866	1	5326	5326		12.959	0	1	183170	+		1432	22587	998	998	1598	1598					0.03697809489096926
ALARGPSSGL	10	Unmodified	_ALARGPSSGL_					0	0	0			REV__ENST00000327492.3_1_22:41842763-41842928:-|nuORF	REV__ENST00000327492.3_1_22:41842763-41842928:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.76416015625	2	464.764166	927.513779	-0.64183	-0.0002983	-0.48559	-0.00022569	-1.1274	-0.00052398	464.76391900973266	33.571	0.91515	33.571	33.135	34.05	0					73	24	5	0	0	0	0.71272	1	2429	2429		66.429	4.3219	1	16958000	+		1433	30417	999	999	1599	1599					0.047123031289856954
ALARGPSSGL	10	Unmodified	_ALARGPSSGL_					0	0	0			REV__ENST00000327492.3_1_22:41842763-41842928:-|nuORF	REV__ENST00000327492.3_1_22:41842763-41842928:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.76495361328125	2	464.764166	927.513779	-0.47621	-0.00022133	-0.57139	-0.00026556	-1.0476	-0.00048689	464.76385631251856	33.461	1.0306	33.467	32.85	33.881	0.0066261					72	27	5	0	0	0	1.0002	1	2427	2427		45.972	3.108	1	16599000	+		1434	30417	999	999	1600	1600					0.047123031289856954
ALARRQLNL	9	Unmodified	_ALARRQLNL_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2738037109375	2	527.827632	1053.64071	-0.67261	-0.00035502	2.8119	0.0014842	2.1393	0.0011292	527.829011291247	92.583	1.0053	92.575	92.275	93.28	-0.0082855					54	23	3	0	0	0	0.024354	1	11724	11724		38.806	0	1	990590			1435	7703	1000	1000	1601	1601					0.11603649073981614
ALASEIQGL	9	Unmodified	_ALASEIQGL_					0	0	0		nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF;ENST00000381017.6_1_9:13106966-13119674:-|nuORF	nc|ENSG00000107186|O75970-5|MPDZ	nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2469787597656	2	451.2531	900.491647	-0.1342	-6.0558E-05	-3.6649	-0.0016538	-3.7991	-0.0017144	451.2498885657479	39.497	2.8473	39.333	38.829	41.676	-0.16459					113	75	3	0	0	0	0.72875	1	3385	3385		44.117	0.49075	1	2496600			1436	2831	1001	1001	1602	1602					0.03742078660570769
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.76092529296875	2	462.761092	923.507631	-0.24194	-0.00011196	-0.31899	-0.00014761	-0.56093	-0.00025958	462.7609414585489	48.78	1.5378	48.78	48.448	49.986	0					135	42	6	0	0	0	0.06122	6	5012	4977;4988;4999;5012;5025;5039		124.59	38.612	1	35243000			1437	982	1002	1002	1603;1604;1605;1606;1607;1608	1606					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.760986328125	2	462.761092	923.507631	-0.29482	-0.00013643	-0.28035	-0.00012973	-0.57516	-0.00026616	462.7609774003344	48.965	1.5588	48.812	48.505	50.064	-0.15277					124	42	5	0	0	0	0.034181	5	4993	4983;4993;5005;5017;5030		138.24	52.883	1	33715000			1438	982	1002	1002	1609;1610;1611;1612;1613	1610					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7606506347656	2	462.761092	923.507631	-0.086364	-3.9966E-05	-0.38413	-0.00017776	-0.4705	-0.00021773	462.7609191795976	48.712	1.5228	48.779	48.417	49.94	0.066799					140	41	6	0	0	0	0.016838	6	4918	4897;4906;4918;4931;4944;4957		152.63	58.627	1	31888000			1439	982	1002	1002	1614;1615;1616;1617;1618;1619	1616					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.76031494140625	2	462.761092	923.507631	-0.86033	-0.00039813	0.19781	9.154E-05	-0.66252	-0.00030659	462.76118441647174	48.769	1.615	48.668	48.323	49.938	-0.1008					111	42	5	0	0	0	0.034181	6	4859	4836;4848;4859;4871;4883;4896		138.24	46.556	1	24832000			1440	982	1002	1002	1620;1621;1622;1623;1624;1625	1622					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.76080322265625	2	462.761092	923.507631	-0.53617	-0.00024812	-0.087542	-4.0511E-05	-0.62372	-0.00028863	462.7610422673755	49.052	1.4449	48.772	48.394	49.839	-0.27977					106	38	5	0	0	0	0.034181	5	4888	4865;4877;4888;4900;4926		138.24	46.052	1	26258000			1441	982	1002	1002	1626;1627;1628;1629;1630	1628					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.76080322265625	2	462.761092	923.507631	-0.29598	-0.00013697	-0.3633	-0.00016812	-0.65928	-0.00030509	462.76090432140467	48.866	1.6034	48.684	48.373	49.977	-0.18206					109	42	5	0	0	0	0.034181	6	4881	4846;4857;4869;4881;4893;4907		138.24	50.488	1	22801000			1442	982	1002	1002	1631;1632;1633;1634;1635;1636	1634					0.04281784897466423
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2927551269531	2	465.292559	928.570566	-0.3985	-0.00018542	0.31954	0.00014868	-0.078963	-3.6741E-05	465.2926194662934	60.979	0.7219	60.979	60.692	61.414	0					60	18	4	0	0	0	0.030064	4	7060	7024;7034;7046;7060		141.52	53.963	1	6929600			1443	2560	1003	1003	1637;1638;1639;1640	1640					0.10342350685516521
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2927551269531	2	465.292559	928.570566	-0.072924	-3.3931E-05	0.02369	1.1023E-05	-0.049234	-2.2908E-05	465.2924992309802	61.221	0.66922	61.007	60.719	61.389	-0.21339					59	17	4	0	0	0	0.020687	4	7042	7031;7042;7054;7068		148.99	54.98	1	8022200			1444	2560	1003	1003	1641;1642;1643;1644	1642					0.10342350685516521
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2923889160156	2	465.292559	928.570566	0.17142	7.976E-05	-0.17918	-8.337E-05	-0.0077596	-3.6105E-06	465.2923946144413	60.897	0.71777	60.969	60.677	61.394	0.071125					62	18	5	0	0	0	0.016542	4	6939	6930;6939;6952;6965		154.12	54.743	1	6827500			1445	2560	1003	1003	1645;1646;1647;1648	1646					0.10342350685516521
ALASVIKEL	9	Unmodified	_ALASVIKEL_					0	0	0		ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2636413574219	2	472.294768	942.574983	0.044153	2.0853E-05	-0.44845	-0.0002118	-0.4043	-0.00019095	472.29439714600005	63.124	0.65791	62.884	62.654	63.312	-0.23926					28	16	2	0	0	0	0.020356	1	7325	7325		115.49	0.035068	1	1718600			1446	3950	1004	1004	1649	1649					0.10139815108436778
ALASVIMGL	9	Oxidation (M)	_ALASVIM(Oxidation (M))GL_		ALASVIM(1)GL		ALASVIM(180)GL	0	0	1		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.7542724609375	2	445.754421	889.494289	0.4281	0.00019083	-0.19971	-8.9022E-05	0.22839	0.00010181	445.75417037838713	77.002	0.99397	77.002	76.678	77.672	0					37	23	3	0	0	0	0.013475	2	9503	9503;9513		177.57	67.864	1	1198700			1447	2693	1005	1005	1650;1651	1650		103			0.04512210793905069
ALASVIMGL	9	Oxidation (M)	_ALASVIM(Oxidation (M))GL_		ALASVIM(1)GL		ALASVIM(160)GL	0	0	1		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.75439453125	2	445.754421	889.494289	0.011778	5.25E-06	0.14557	6.489E-05	0.15735	7.014E-05	445.7544324532877	77.208	0.79319	76.997	76.668	77.461	-0.21087					32	18	2	0	0	0	0.015333	1	9503	9503		160.17	64.123	1	1259600			1448	2693	1005	1005	1652	1652		103			0.04512210793905069
ALASVIMGL	9	Oxidation (M)	_ALASVIM(Oxidation (M))GL_		ALASVIM(1)GL		ALASVIM(160)GL	0	0	1		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	445.7535095214844	2	445.754421	889.494289	0.10859	4.8406E-05	0.21299	9.4943E-05	0.32159	0.00014335	445.7543791096637	77	0.9199	77.013	76.696	77.616	0.013496					38	21	3	0	0	0	0.015333	2	9439	9421;9439		196.43	81.848	1	1199800			1449	2693	1005	1005	1653;1654	1654		103			0.04512210793905069
ALASVIMGL	9	Oxidation (M)	_ALASVIM(Oxidation (M))GL_					0	0	1		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	445.754421	889.494289	0.44539	0.00019853	-0.56296	-0.00025094	-0.11758	-5.241E-05	445.7542615406238	77.244	0.4118	76.982	76.687	77.099	-0.26202	-0.016638	-0.00051913	NaN	177.57	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113310			1450	2693	1005	1005				103			0.04512210793905069
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2923889160156	2	483.292559	964.570566	0.096311	4.6546E-05	0.46576	0.0002251	0.56208	0.00027165	483.2925578861576	57.732	1.5599	57.732	57.227	58.787	0					95	41	3	0	0	0	0.014013	5	6523	6489;6500;6511;6523;6536		166.78	90.008	1	18325000			1451	3131	1006	1006	1655;1656;1657;1658;1659	1658					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2925720214844	2	483.292559	964.570566	-0.3757	-0.00018157	0.90871	0.00043917	0.53301	0.0002576	483.29285101053523	58.011	1.6804	57.836	57.268	58.948	-0.1749					102	45	3	0	0	0	0.015901	5	6505	6495;6505;6515;6526;6539		157.33	75.624	1	15577000			1452	3131	1006	1006	1660;1661;1662;1663;1664	1661					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.2910461425781	2	483.292559	964.570566	-0.81432	-0.00039356	1.2728	0.00061511	0.45843	0.00022155	483.29299749927026	57.611	1.5796	57.706	57.243	58.823	0.095306					100	42	4	0	0	0	0.014013	5	6405	6395;6405;6417;6429;6450		166.78	89.936	1	23499000			1453	3131	1006	1006	1665;1666;1667;1668;1669	1666					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2926025390625	2	483.292559	964.570566	-0.20933	-0.00010117	0.49617	0.0002398	0.28684	0.00013863	483.29265375653745	57.833	0.53957	57.655	57.319	57.859	-0.17775					29	13	3	0	0	0	0.016871	3	6342	6319;6328;6342		152.47	61.694	1	6212400			1454	3131	1006	1006	1670;1671;1672	1672					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.2923278808594	2	483.292559	964.570566	-0.029864	-1.4433E-05	0.0066528	3.2153E-06	-0.023212	-1.1218E-05	483.29246432787005	57.842	0.53894	57.652	57.332	57.871	-0.19018					39	13	4	0	0	0	0.013094	4	6333	6323;6333;6347;6359		171.38	70.173	1	6923600			1455	3131	1006	1006	1673;1674;1675;1676	1674					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.29266357421875	2	483.292559	964.570566	-0.020998	-1.0148E-05	0.27657	0.00013367	0.25558	0.00012352	483.2924809733932	57.917	1.2438	57.683	57.386	58.63	-0.23363					49	30	4	0	0	0	0.016871	3	6323	6323;6333;6347		152.47	67.555	1	5641800			1456	3131	1006	1006	1677;1678;1679	1677					0.08686350685502475
ALATLKLYL	9	Unmodified	_ALATLKLYL_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7930603027344	2	503.320786	1004.62702	-0.11198	-5.6361E-05	-0.033925	-1.7075E-05	-0.1459	-7.3436E-05	503.3207280299816	64.367	0.588	64.174	63.961	64.549	-0.19243					21	14	2	0	0	0	0.024541	1	7290	7290		16.473	0	1	275030	+		1457	28475	1007	1007	1680	1680					0.12488978522173966
ALAVHYPL	8	Unmodified	_ALAVHYPL_					0	0	0			REV__ENSG00000203883|ENST00000340356|SOX18	REV__ENSG00000203883|ENST00000340356|SOX18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7611083984375	2	442.255446	882.496338	-0.70766	-0.00031297	-1.6786	-0.00074237	-2.3863	-0.0010553	442.2546056521322	39.263	0.71453	39.287	38.956	39.671	0.023727					28	19	2	0	0	0	0.027866	1	3252	3252		54.895	0.1299	1	589260	+		1458	28553	1008	1008	1681	1681					0.05039007593984479
ALCCLTIL	8	Unmodified	_ALCCLTIL_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;ENST00000505732.5_1_9:15186859-15307321:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.2166748046875	2	425.232267	848.449982	-0.13154	-5.5937E-05	1.2923	0.00054954	1.1608	0.0004936	425.23272513218694	26.877	1.1445	26.709	26.301	27.445	-0.16816					40	26	3	0	0	0	0.027866	1	1420	1420		15.636	6.8139	1	205200			1459	6457	1009	1009	1682	1682					0.0196948337604681
ALCHCLPVLST	11	Unmodified	_ALCHCLPVLST_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.8137817382812	2	578.796294	1155.57804	-0.54387	-0.00031479	-1.705	-0.00098683	-2.2488	-0.0013016	578.7950524007563	71.244	0.4245	70.987	70.739	71.164	-0.25712					14	9	2	0	0	0	0.024749	1	8341	8341		25.574	0	1	88827			1460	7784	1010	1010	1683	1683					0.006469988992648723
ALCLLLPLL	9	Unmodified	_ALCLLLPLL_					0	0	0		ENST00000592793.5_1_16:5121850-5123284:+|nuORF;ENSG00000033011|ENST00000262374|ALG1	ENST00000592793.5_1_16:5121850-5123284:+|nuORF	ENST00000592793.5_1_16:5121850-5123284:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2768249511719	2	484.814282	967.614011	0.16272	7.8888E-05	-1.1688	-0.00056664	-1.0061	-0.00048775	484.81602633246587	42.126	0.39924	42.126	41.856	42.255	0					16	11	2	0	0	0	0.024289	1	3839	3839		21.702	0	1	39775			1461	1017	1011	1011	1684	1684					0.12890824138446533
ALCLRALAP	9	Unmodified	_ALCLRALAP_					0	0	0		ENST00000431060.4_1_15:101404722-101404956:+|nuORF	ENST00000431060.4_1_15:101404722-101404956:+|nuORF	ENST00000431060.4_1_15:101404722-101404956:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.25042724609375	2	464.275855	926.537157	-0.52404	-0.0002433	0.25174	0.00011688	-0.2723	-0.00012642	464.2760935566092	48.027	0.15967	47.874	47.764	47.924	-0.15301					8	4	2	0	0	0	0.024466	1	4831	4831		42.474	8.9589	1	415090			1462	14181	1012	1012	1685	1685					0.07095025641956454
ALCLRALL	8	Unmodified	_ALCLRALL_					0	0	0		ENST00000489366.2_1_1:46871719-46874871:+|nuORF;ENSG00000117480|ENST00000243167|FAAH	REV__RNF145|p.V163A|1|0.29|ENSG00000145860|chr5:159176765-159176765|A/G|missense_variant	REV__RNF145|p.V163A|1|0.29|ENSG00000145860|chr5:159176765-159176765|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7397766113281	2	436.772948	871.531344	-0.098448	-4.3E-05	-0.35246	-0.00015395	-0.45091	-0.00019695	436.77271589526885	66.989	0.73426	66.989	66.755	67.49	0					23	17	2	0	0	0	0.027866	1	7968	7968		52.299	5.5327	1	300430			1463	3632	1013	1013	1686	1686					0.0904392713028983
ALCLRALL	8	Unmodified	_ALCLRALL_					0	0	0		ENST00000489366.2_1_1:46871719-46874871:+|nuORF;ENSG00000117480|ENST00000243167|FAAH	REV__RNF145|p.V163A|1|0.29|ENSG00000145860|chr5:159176765-159176765|A/G|missense_variant	REV__RNF145|p.V163A|1|0.29|ENSG00000145860|chr5:159176765-159176765|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7398376464844	2	436.772948	871.531344	-0.069984	-3.0567E-05	-0.42278	-0.00018466	-0.49276	-0.00021523	436.77267863017977	67.378	0.84404	67.089	66.749	67.593	-0.28834					30	20	2	0	0	0	0.027866	1	7975	7975		37.028	1.8278	1	252420			1464	3632	1013	1013	1687	1687					0.0904392713028983
ALCLWSLGQ	9	Carbamidomethyl (C)	_ALC(Carbamidomethyl (C))LWSLGQ_	ALC(1)LWSLGQ		ALC(56)LWSLGQ		0	1	0			REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2518310546875	2	524.268227	1046.5219	0.039549	2.0734E-05	-3.4707	-0.0018196	-3.4311	-0.0017988	524.2660798595534	53.529	0.70259	53.271	52.843	53.546	-0.25838					32	18	2	0	0	0	0.023355	1	5641	5641		55.504	19.886	1	408480	+		1465	33163	1014	1014	1688	1688	439				0.000501140541246059
ALCLWSLGQ	9	Carbamidomethyl (C)	_ALC(Carbamidomethyl (C))LWSLGQ_					0	1	0			REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.268227	1046.5219	-0.018812	-9.8624E-06	-3.7063	-0.0019431	-3.7251	-0.001953	524.2660804296991	53.371	0.70969	53.181	52.754	53.463	-0.18981	-0.033691	-0.00031057	NaN	55.504	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285370	+		1466	33163	1014	1014			439				0.000501140541246059
ALCNKPLI	8	Unmodified	_ALCNKPLI_					0	0	0			REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.2585144042969	2	436.257131	870.499709	0.61319	0.00026751	4.2254	0.0018433	4.8385	0.0021109	436.2588397238873	24.491	1.0747	24.569	24.138	25.213	0.078346					43	23	3	0	0	0	1.0574	1	1020	1020		24.504	0.30126	1	372070	+		1467	30856	1015	1015	1689	1689					0.05927934376336452
ALCNKPLI	8	Unmodified	_ALCNKPLI_					0	0	0			REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.257131	870.499709	-0.24616	-0.00010739	4.8847	0.002131	4.6386	0.0020236	436.2590964063294	24.553	0.53274	24.553	24.297	24.83	0	-0.0055464	-0.00010249	NaN	24.504	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333870	+		1468	30856	1015	1015							0.05927934376336452
ALCNKPLI	8	Unmodified	_ALCNKPLI_					0	0	0			REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.257131	870.499709	-1.01	-0.00044062	5.7086	0.0024904	4.6986	0.0020498	436.25944784962485	24.6	1.005	24.553	24.22	25.225	-0.047148	-0.00516	0.00061635	NaN	24.504	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366680	+		1469	30856	1015	1015							0.05927934376336452
ALCNKPLI	8	Unmodified	_ALCNKPLI_					0	0	0			REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	REV__ENST00000358402.8_1_14:65541896-65541947:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	436.257131	870.499709	0.61319	0.00026751	4.2254	0.0018433	4.8385	0.0021109	436.2588397238873	24.491	1.0747	24.569	24.138	25.213	0.078346	0.010706	-0.00067782	NaN	24.504	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372070	+		1470	30856	1015	1015							0.05927934376336452
ALCRQLTQL	9	Unmodified	_ALCRQLTQL_					0	0	0			REV__ENST00000541931.5_1_12:31854930-31882022:-|nuORF	REV__ENST00000541931.5_1_12:31854930-31882022:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2976684570312	2	523.294776	1044.575	0.66941	0.0003503	-1.6204	-0.00084797	-0.95104	-0.00049768	523.2937129938047	51.733	1.1744	51.549	51.14	52.314	-0.18404					85	30	4	0	0	0	0.16468	1	5382	5382		96.19	0.37527	1	7021700	+		1471	29885	1016	1016	1690	1690					0.05449491836770903
ALCWRILH	8	Unmodified	_ALCWRILH_					0	0	0			REV__ENST00000479509.1_1_6:37140348-37141864:+|nuORF	REV__ENST00000479509.1_1_6:37140348-37141864:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.79833984375	2	506.281472	1010.54839	-0.61149	-0.00030958	0.20338	0.00010297	-0.4081	-0.00020661	506.28090292747373	20.799	0.78907	20.576	19.973	20.762	-0.22344					20	15	2	0	0	0	0.027866	1	509	509		28.254	0	1	56770	+		1472	23733	1017	1017	1691	1691					0.04353847736103944
ALDASILNV	9	Unmodified	_ALDASILNV_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.2607421875	2	458.260925	914.507297	0.22158	0.00010154	0.65525	0.00030028	0.87683	0.00040182	458.26127100615156	77.893	1.3585	77.893	77.551	78.91	0					67	32	4	0	0	0	0.013333	3	9632	9624;9632;9647		207.6	77.921	1	2336200			1473	6769	1018	1018	1692;1693;1694	1693					0.04662365177614447
ALDASILNV	9	Unmodified	_ALDASILNV_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.26055908203125	2	458.260925	914.507297	0.87124	0.00039925	0.20843	9.5517E-05	1.0797	0.00049477	458.26103147167066	78.105	1.5692	77.913	77.48	79.049	-0.1921					70	37	3	0	0	0	0.013333	2	9619	9619;9629		195.81	80.355	1	2629000			1474	6769	1018	1018	1695;1696	1695					0.04662365177614447
ALDASILNV	9	Unmodified	_ALDASILNV_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2606506347656	2	458.260925	914.507297	-0.063555	-2.9125E-05	0.32646	0.0001496	0.2629	0.00012048	458.2609226741249	77.926	0.98824	77.942	77.618	78.606	0.015907					52	23	4	0	0	0	0.013333	3	9558	9548;9558;9570		191.63	76.167	1	2276700			1475	6769	1018	1018	1697;1698;1699	1698					0.04662365177614447
ALDASILNV	9	Unmodified	_ALDASILNV_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.260925	914.507297	-0.15464	-7.0863E-05	-0.071491	-3.2761E-05	-0.22613	-0.00010362	458.2611447095327	78.194	0.63431	77.933	77.529	78.164	-0.26105	0.016548	-0.00037764	NaN	191.63	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303540			1476	6769	1018	1018							0.04662365177614447
ALDASILNV	9	Unmodified	_ALDASILNV_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	458.260925	914.507297	0.48118	0.00022051	0.2395	0.00010975	0.72067	0.00033026	458.2606356832596	78.144	0.67447	77.905	77.536	78.21	-0.23875	-0.010915	-9.2618E-05	NaN	191.63	47	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296620			1477	6769	1018	1018							0.04662365177614447
ALDASILNV	9	Unmodified	_ALDASILNV_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.260925	914.507297	0.027039	1.2391E-05	0.65668	0.00030093	0.68372	0.00031332	458.2608455975271	78.067	0.67932	77.911	77.575	78.254	-0.15591	-0.005029	0.00028974	NaN	191.63	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311790			1478	6769	1018	1018							0.04662365177614447
ALDCPCDMS	9	Unmodified	_ALDCPCDMS_					0	0	0			REV__ENSG00000173653|ENST00000309657|RCE1	REV__ENSG00000173653|ENST00000309657|RCE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77764892578125	2	477.671914	953.329274	0.28094	0.0001342	2.033	0.00097109	2.3139	0.0011053	477.67429892300026	27.421	0.47185	27.421	27.144	27.616	0					17	12	2	0	0	0	0.024381	1	1464	1464		55.504	43.297	1	60935	+		1479	26794	1019	1019	1700	1700					-0.14925712399747226
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2811279296875	2	511.281857	1020.54916	0.032543	1.6639E-05	-0.64473	-0.00032964	-0.61218	-0.000313	511.281376479037	61.34	0.87412	61.34	60.884	61.758	0					37	22	2	0	0	0	0.2508	2	7095	7095;7107		82.241	26.736	1	2949500			1480	3654	1020	1020	1701;1702	1701					0.03970920866152028
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2810363769531	2	511.281857	1020.54916	0.21777	0.00011134	-0.64707	-0.00033083	-0.42929	-0.00021949	511.281354516733	61.581	0.90191	61.354	60.937	61.839	-0.22663					37	23	2	0	0	0	0.12914	2	7110	7099;7110		104.06	36.422	1	2741600			1481	3654	1020	1020	1703;1704	1704					0.03970920866152028
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2813415527344	2	511.281857	1020.54916	0.014992	7.665E-06	-0.57346	-0.0002932	-0.55847	-0.00028554	511.2813715483741	61.28	0.9431	61.351	60.871	61.814	0.071129					40	24	2	0	0	0	0.12914	2	7011	7001;7011		104.06	24.606	1	2722300			1482	3654	1020	1020	1705;1706	1706					0.03970920866152028
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.28228759765625	2	511.281857	1020.54916	-0.082888	-4.2379E-05	-0.45482	-0.00023254	-0.53771	-0.00027492	511.2817373170163	61.602	0.80974	61.389	61.042	61.852	-0.21375					44	19	3	0	0	0	0.247	2	6891	6891;6902		82.75	33.309	1	1887600			1483	3654	1020	1020	1707;1708	1707					0.03970920866152028
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2821044921875	2	511.281857	1020.54916	-0.97592	-0.00049897	-0.44365	-0.00022683	-1.4196	-0.0007258	511.2821512699462	61.519	0.97021	61.342	60.912	61.883	-0.17781					51	20	4	0	0	0	0.247	2	6896	6884;6896		82.75	33.309	1	2046800			1484	3654	1020	1020	1709;1710	1710					0.03970920866152028
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENSG00000117691|ENST00000366988|NENF	ENSG00000117691|ENST00000366988|NENF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2821960449219	2	511.281857	1020.54916	-0.32982	-0.00016863	-0.56388	-0.0002883	-0.89369	-0.00045693	511.2818360109181	61.686	0.85048	61.429	61.008	61.859	-0.25725					51	20	4	0	0	0	0.18994	1	6890	6890		90.601	8.3603	1	2131500			1485	3654	1020	1020	1711	1711					0.03970920866152028
ALDKALTSV	9	Unmodified	_ALDKALTSV_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2689514160156	2	459.26875	916.522947	-0.14126	-6.4874E-05	1.5518	0.00071267	1.4105	0.0006478	459.26947774033914	48.17	1.7011	48.17	47.843	49.544	0					112	48	3	0	0	0	0.16539	3	4888	4888;4899;4912		96.034	11.118	1	3873300			1486	2878	1021	1021	1712;1713;1714	1712					0.06134651694662807
ALDKALTSV	9	Unmodified	_ALDKALTSV_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2689514160156	2	459.26875	916.522947	-0.38916	-0.00017873	1.7641	0.00081017	1.3749	0.00063144	459.2695781182357	48.353	1.9206	48.2	47.858	49.779	-0.15301					121	53	3	0	0	0	0.16539	3	4912	4889;4901;4912		96.034	21.779	1	3815300			1487	2878	1021	1021	1715;1716;1717	1717					0.06134651694662807
ALDKALTSV	9	Unmodified	_ALDKALTSV_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2690124511719	2	459.26875	916.522947	-0.21243	-9.7564E-05	1.9382	0.00089017	1.7258	0.00079261	459.26972638972376	48.076	2.8724	48.143	46.888	49.76	0.066795					140	80	3	0	0	0	0.1764	2	4818	4818;4831		93.598	16.823	1	4532800			1488	2878	1021	1021	1718;1719	1718					0.06134651694662807
ALDKALTSV	9	Unmodified	_ALDKALTSV_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2679443359375	2	459.26875	916.522947	-0.46174	-0.00021206	1.013	0.00046525	0.5513	0.00025319	459.2691290493807	48.112	0.69985	48.015	47.557	48.257	-0.097553					46	18	3	0	0	0	0.76818	1	4764	4764		41.427	0.64845	1	4953900			1489	2878	1021	1021	1720	1720					0.06134651694662807
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.29522705078125	2	472.294768	942.574983	0.66402	0.00031361	-0.25298	-0.00011948	0.41104	0.00019413	472.2944825818595	57.857	1.4293	57.857	57.641	59.07	0					77	38	4	0	0	0	0.041068	3	6532	6519;6532;6545		132.76	34.128	1	5654100			1490	6143	1022	1022	1721;1722;1723	1722					0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2939453125	2	472.294768	942.574983	-0.18971	-8.9598E-05	0.62612	0.00029571	0.43641	0.00020611	472.2949144411543	58.135	1.2252	57.96	57.723	58.948	-0.1749					71	33	4	0	0	0	0.086035	3	6535	6535;6552;6566		115.49	27.74	1	6881300			1491	6143	1022	1022	1724;1725;1726	1724					0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2948303222656	2	472.294768	942.574983	-0.13017	-6.1477E-05	0.64274	0.00030356	0.51257	0.00024208	472.2948913310776	57.76	1.3224	57.855	57.608	58.93	0.095306					78	35	4	0	0	0	0.014918	3	6436	6424;6436;6448		162.25	57.506	1	6745400			1492	6143	1022	1022	1727;1728;1729	1728					0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.294768	942.574983	-0.055071	-2.601E-05	0.12642	5.9706E-05	0.071346	3.3696E-05	472.29478790084215	58.049	0.54849	57.871	57.554	58.103	-0.17775	-0.010724	-0.00021283	NaN	162.25	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1270200			1493	6143	1022	1022							0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.294768	942.574983	0.075381	3.5602E-05	-0.070579	-3.3334E-05	0.0048013	2.2676E-06	472.29467163749047	57.973	0.41747	57.783	57.56	57.978	-0.19017	-0.098396	-0.00039891	NaN	162.25	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1094500			1494	6143	1022	1022							0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.294768	942.574983	-0.056017	-2.6457E-05	0.18105	8.5507E-05	0.12503	5.9051E-05	472.29466034334627	58.197	0.64939	57.963	57.74	58.389	-0.23363	0.081761	-0.00016122	NaN	162.25	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698740			1495	6143	1022	1022							0.10139815108414041
ALDLRLTAH	9	Unmodified	_ALDLRLTAH_					0	0	0			REV__ENSG00000196604|ENST00000409914|POTEF	REV__ENSG00000196604|ENST00000409914|POTEF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3237609863281	2	505.293091	1008.57163	-0.058704	-2.9663E-05	-2.8611	-0.0014457	-2.9198	-0.0014754	505.2905291326545	78.968	0.41561	78.814	78.734	79.149	-0.15363					16	9	2	0	0	0	0.024025	1	9426	9426		62.107	1.9892	1	102650	+		1496	28021	1023	1023	1730	1730					0.06768565054403552
ALDLRVFAN	9	Unmodified	_ALDLRVFAN_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;ENST00000480971.5_1_13:113839853-113862948:-|nuORF;ENST00000491548.5_1_13:113845184-113862948:-|nuORF;ENST00000475433.5_1_13:113838773-113862921:-|nuORF	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7738037109375	2	509.787641	1017.56073	-0.53691	-0.00027371	1.6003	0.0008158	1.0634	0.00054209	509.78723945005146	69.532	0.63895	69.547	69.316	69.955	0.015121					25	15	2	0	0	0	0.024374	1	8281	8281		32.812	0	1	121720			1497	4185	1024	1024	1731	1731					0.05265162680132107
ALDNDNYNL	9	Unmodified	_ALDNDNYNL_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.23828125	2	526.238178	1050.4618	-1.0053	-0.00052903	0.86206	0.00045365	-0.14325	-7.5386E-05	526.238538703008	56.396	0.70555	56.396	56.104	56.809	0					53	19	4	0	0	0	0.22902	1	6292	6292		85.161	22.182	1	3859000			1498	6977	1025	1025	1732	1732					-0.06140905075426417
ALDNDNYNL	9	Unmodified	_ALDNDNYNL_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2378540039062	2	526.238178	1050.4618	-0.84982	-0.00044721	0.65487	0.00034462	-0.19495	-0.00010259	526.238410798185	56.507	0.72155	56.342	56.058	56.78	-0.16432					58	19	4	0	0	0	0.020687	3	6279	6267;6279;6292		148.99	72.14	1	3758600			1499	6977	1025	1025	1733;1734;1735	1734					-0.06140905075426417
ALDNDNYNL	9	Unmodified	_ALDNDNYNL_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2384033203125	2	526.238178	1050.4618	-0.45798	-0.00024101	0.30448	0.00016023	-0.1535	-8.078E-05	526.2382243196002	56.165	0.85441	56.263	55.931	56.786	0.097897					72	23	5	0	0	0	0.094442	3	6187	6163;6175;6187		112.41	35.637	1	3873400			1500	6977	1025	1025	1736;1737;1738	1738					-0.06140905075426417
ALDNDNYNL	9	Unmodified	_ALDNDNYNL_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.238178	1050.4618	-0.34518	-0.00018164	0.83799	0.00044098	0.49282	0.00025934	526.2382568437381	56.595	0.58561	56.428	56.165	56.751	-0.1672	0.034366	0.000277	NaN	148.99	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1309200			1501	6977	1025	1025							-0.06140905075426417
ALDNDNYNL	9	Unmodified	_ALDNDNYNL_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.238178	1050.4618	0.12401	6.5261E-05	0.13136	6.9125E-05	0.25537	0.00013439	526.2379966018121	56.739	0.53387	56.537	56.25	56.783	-0.20209	0.14396	-0.00046671	NaN	148.99	43	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1684400			1502	6977	1025	1025							-0.06140905075426417
ALDNGLFTL	9	Unmodified	_ALDNGLFTL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2608642578125	2	482.260925	962.507297	0.43339	0.000209	-0.4319	-0.00020829	0.0014802	7.1383E-07	482.2606006850893	87.219	3.0009	87.219	86.605	89.605	0					134	71	5	0	0	0	0.072054	3	10962	10962;10971;10985		120.62	26.615	1	2009300			1503	15881	1026	1026	1739;1740;1741	1739					0.02454365177618456
ALDNGLFTL	9	Unmodified	_ALDNGLFTL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2611999511719	2	482.260925	962.507297	0.34821	0.00016793	-0.41225	-0.00019881	-0.064042	-3.0885E-05	482.2606330741255	87.203	2.5776	87.168	86.65	89.227	-0.035362					149	61	4	0	0	0	0.03849	1	10927	10927		134.81	28.396	1	2044800			1504	15881	1026	1026	1742	1742					0.02454365177618456
ALDNGLFTL	9	Unmodified	_ALDNGLFTL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.260986328125	2	482.260925	962.507297	0.531	0.00025608	-0.63376	-0.00030564	-0.10276	-4.9558E-05	482.26051797588315	87.197	2.1662	87.218	86.634	88.801	0.021263					148	51	4	0	0	0	0.082191	2	10886	10886;10897		116.9	29.149	1	1988400			1505	15881	1026	1026	1743;1744	1743					0.02454365177618456
ALDPNIATL	9	Unmodified	_ALDPNIATL_					0	0	0		ENSG00000153914|ENST00000334121|SREK1;nc|ENSG00000153914|Q8WXA9|SREK1;ENST00000520580.5_1_5:65455027-65458421:+|nuORF	ENSG00000153914|ENST00000334121|SREK1	ENSG00000153914|ENST00000334121|SREK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2641296386719	2	464.260925	926.507297	0.60006	0.00027858	-0.21801	-0.00010121	0.38206	0.00017737	464.2607012834498	70.807	0.81225	70.817	70.507	71.319	0.010735					32	19	3	0	0	0	0.30449	1	8470	8470		75.043	14.925	1	1395600			1506	6365	1027	1027	1745	1745					0.04110365177609765
ALDSNHSFV	9	Unmodified	_ALDSNHSFV_					0	0	0			REV__nc|ENSG00000167555|Q3MIS6-2|ZNF528	REV__nc|ENSG00000167555|Q3MIS6-2|ZNF528	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.76910400390625	2	495.237981	988.461409	-0.47758	-0.00023651	-0.22766	-0.00011275	-0.70524	-0.00034926	495.23777368373266	47.569	0.35329	47.472	47.278	47.631	-0.096722					11	9	2	0	0	0	0.024405	1	4640	4640		44.117	0	1	129610	+		1507	26155	1028	1028	1746	1746					-0.03328280004609496
ALDSQVPKV	9	Unmodified	_ALDSQVPKV_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3;FGD3|p.Q123Rfs*51|1|0.32|ENSG00000127084|chr9:92976618-92976618|C/-|frameshift_variant	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MSMS	OPSCC_40_ClassI_Rep-1	4	478.7734375	2	478.7742	955.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.646	1	46.549	46.049	47.049	-0.096649								0	0	0	0.067671	1	4514	4514		101.25	13.498	1				1508	4228	1029	1029	1747	1747					0.0543005406894963
ALDSQVPKV	9	Unmodified	_ALDSQVPKV_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3;FGD3|p.Q123Rfs*51|1|0.32|ENSG00000127084|chr9:92976618-92976618|C/-|frameshift_variant	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MSMS	OPSCC_40_ClassI_Rep-1	4	478.7728576660156	2	478.7742	955.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.716	1	46.619	46.119	47.119	-0.096649								0	0	0	0.048917	1	4526	4526		109.48	21.782	1				1509	4228	1029	1029	1748	1748					0.0543005406894963
ALDSQVPKV	9	Unmodified	_ALDSQVPKV_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3;FGD3|p.Q123Rfs*51|1|0.32|ENSG00000127084|chr9:92976618-92976618|C/-|frameshift_variant	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7734069824219	2	478.7742	955.533846	-0.059877	-2.8668E-05	0.24345	0.00011656	0.18358	8.7891E-05	478.7741721726166	46.896	1.127	46.627	46.036	47.163	-0.26939					78	30	4	0	0	0	0.041068	3	4529	4519;4529;4546		132.76	44.506	1	3821900			1510	4228	1029	1029	1749;1750;1751	1750					0.0543005406894963
ALDSQVPKV	9	Unmodified	_ALDSQVPKV_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3;FGD3|p.Q123Rfs*51|1|0.32|ENSG00000127084|chr9:92976618-92976618|C/-|frameshift_variant	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7740173339844	2	478.7742	955.533846	-0.34082	-0.00016317	0.55808	0.00026719	0.21726	0.00010402	478.7743108778627	46.723	1.1784	46.529	45.975	47.154	-0.19387					87	32	4	0	0	0	0.030064	3	4501	4501;4518;4531		141.52	39.92	1	3860000			1511	4228	1029	1029	1752;1753;1754	1752					0.0543005406894963
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2221374511719	2	460.221997	918.429441	0.44718	0.0002058	-0.49089	-0.00022592	-0.043709	-2.0116E-05	460.2216929518939	42.335	0.9119	42.335	42.02	42.932	0					66	25	4	0	0	0	0.01388	4	3874	3874;3885;3897;3910		195.06	86.976	1	10284000			1512	2528	1030	1030	1755;1756;1757;1758	1755					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2224426269531	2	460.221997	918.429441	0.023449	1.0792E-05	0.13318	6.1293E-05	0.15663	7.2085E-05	460.221971515777	42.466	0.98461	42.333	42.049	43.034	-0.1322					76	27	5	0	0	0	0.013065	4	3917	3879;3891;3903;3917		209.84	89.219	1	9748400			1513	2528	1030	1030	1759;1760;1761;1762	1762					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2218322753906	2	460.221997	918.429441	0.34006	0.0001565	-0.25576	-0.00011771	0.084299	3.8796E-05	460.2218063445465	42.349	0.84605	42.375	42.088	42.934	0.026012					67	23	5	0	0	0	0.014454	4	3817	3817;3826;3838;3850		209.84	89.219	1	11461000			1514	2528	1030	1030	1763;1764;1765;1766	1763					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.2222900390625	2	460.221997	918.429441	-0.045593	-2.0983E-05	0.24446	0.00011251	0.19887	9.1524E-05	460.22197554044374	42.562	1.1663	42.439	42.076	43.242	-0.12299					121	30	7	0	0	0	0.01388	6	3856	3824;3832;3844;3856;3868;3883		209.84	86.976	1	12672000			1515	2528	1030	1030	1767;1768;1769;1770;1771;1772	1770					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.2218933105469	2	460.221997	918.429441	-0.40458	-0.0001862	0.25331	0.00011658	-0.15126	-6.9614E-05	460.2220942589864	42.747	1.0974	42.515	42.155	43.252	-0.23215					98	28	5	0	0	0	0.01388	5	3850	3840;3850;3861;3873;3887		209.84	101.75	1	11868000			1516	2528	1030	1030	1773;1774;1775;1776;1777	1774					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2219543457031	2	460.221997	918.429441	-0.34272	-0.00015773	0.10603	4.8797E-05	-0.23669	-0.00010893	460.2220379335246	42.693	1.0615	42.467	42.143	43.205	-0.22597					95	27	5	0	0	0	0.01388	5	3838	3829;3838;3849;3861;3874		209.84	89.219	1	13166000			1517	2528	1030	1030	1778;1779;1780;1781;1782	1779					-0.03303692478425546
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.245361328125	2	481.245472	960.476391	0.18931	9.1104E-05	-0.34067	-0.00016395	-0.15136	-7.2841E-05	481.24530921605253	60.922	1.5233	60.716	60.336	61.859	-0.20599					89	37	5	0	0	0	0.013924	4	6780	6780;6791;6803;6815		167.23	53.817	1	11398000			1518	4643	1031	1031	1783;1784;1785;1786	1783					-0.005428329272717747
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.24554443359375	2	481.245472	960.476391	-1.0224	-0.00049201	0.74827	0.0003601	-0.2741	-0.00013191	481.2458621142709	60.894	1.5236	60.718	60.322	61.845	-0.1761					85	37	5	0	0	0	0.013293	5	6797	6775;6785;6797;6809;6822		176.09	48.841	1	11352000			1519	4643	1031	1031	1787;1788;1789;1790;1791	1789					-0.005428329272717747
ALDSTNVEL	9	Unmodified	_ALDSTNVEL_					0	0	0		ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	ENST00000487325.5_1_1:156038076-156039544:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.2457580566406	2	481.245472	960.476391	-0.58274	-0.00028044	0.18657	8.9786E-05	-0.39617	-0.00019065	481.24555993780916	61.047	1.2492	60.794	60.421	61.671	-0.25373					71	30	4	0	0	0	0.013924	5	6792	6782;6792;6804;6816;6829		167.23	61.932	1	12098000			1520	4643	1031	1031	1792;1793;1794;1795;1796	1793					-0.005428329272717747
ALDVVNLVY	9	Unmodified	_ALDVVNLVY_					0	0	0		nc|ENSG00000128284|O95236|APOL3;nc|ENSG00000128284|O95236-3|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.2841796875	2	503.2844	1004.55425	0.68221	0.00034334	-0.78074	-0.00039294	-0.098538	-4.9593E-05	503.2840125359702	85.238	1.4297	85.089	84.666	86.095	-0.14967					60	33	4	0	0	0	0.6504	1	10339	10339		49.442	0	1	1186000			1521	18254	1032	1032	1797	1797					0.0521522472874949
ALDVVNLVY	9	Unmodified	_ALDVVNLVY_					0	0	0		nc|ENSG00000128284|O95236|APOL3;nc|ENSG00000128284|O95236-3|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.2845458984375	2	503.2844	1004.55425	0.21492	0.00010817	-0.94818	-0.0004772	-0.73326	-0.00036904	503.2842047086868	85.244	1.0832	85.106	84.705	85.789	-0.13753					63	25	4	0	0	0	0.29158	1	10318	10318		76.774	10.345	1	1161400			1522	18254	1032	1032	1798	1798					0.0521522472874949
ALDVVNLVY	9	Unmodified	_ALDVVNLVY_					0	0	0		nc|ENSG00000128284|O95236|APOL3;nc|ENSG00000128284|O95236-3|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.2844	1004.55425	0.40958	0.00020614	-0.43186	-0.00021735	-0.022276	-1.1211E-05	503.2841658644076	85.292	1.9563	85.096	84.595	86.552	-0.19508	-0.00056556	0.00017434	NaN	76.774	76	45	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1188700			1523	18254	1032	1032							0.0521522472874949
ALEAQLVKV	9	Unmodified	_ALEAQLVKV_					0	0	0			REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.800217	969.585882	-0.76471	-0.00037149	1.9166	0.00093107	1.1519	0.00055958	485.800998230673	44.149	0.17352	44.186	44.035	44.209	0.0369					6	4	2	0	0	0	0.022756	1	4127	4127		102.77	23.322	1	94528	+		1524	25840	1033	1033	1799	1799					0.09987217482716915
ALEAWPAL	8	Unmodified	_ALEAWPAL_					0	0	0		ENSG00000158526|ENST00000375151|TSR2	ENSG00000158526|ENST00000375151|TSR2	ENSG00000158526|ENST00000375151|TSR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7797546386719	2	435.739628	869.464704	-0.093687	-4.0823E-05	-3.3952	-0.0014794	-3.4889	-0.0015203	435.7378399362237	40.678	0.54716	40.701	40.387	40.934	0.023006					37	15	3	0	0	0	0.027866	1	3504	3504		28.254	0	1	675010			1525	6680	1034	1034	1800	1800					0.024750148400244143
ALEDAGLLAG	10	Unmodified	_ALEDAGLLAG_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2876892089844	2	465.250557	928.486562	-0.26797	-0.00012467	2.1298	0.00099088	1.8618	0.00086621	465.2520464461668	75.528	0.95396	75.284	74.918	75.872	-0.24455					37	25	3	0	0	0	0.03519	1	9281	9281		124.59	11.183	1	408080	+		1526	24613	1035	1035	1801	1801					0.01945774797957256
ALEEISNPK	9	Unmodified	_ALEEISNPK_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8214416503906	2	500.769114	999.523675	0.21441	0.00010737	0.9467	0.00047408	1.1611	0.00058145	501.27210293212966	39.408	0.41104	39.408	39.183	39.594	0					19	11	3	0	0	0	0.024381	1	3381	3381		55.504	26.355	1	78248	+		1527	22148	1036	1036	1802	1802					0.023894463437159175
ALEELASKT	9	Unmodified	_ALEELASKT_					0	0	0		ENSG00000138136|ENST00000370193|LBX1	ENSG00000138136|ENST00000370193|LBX1	ENSG00000138136|ENST00000370193|LBX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7786865234375	2	481.263665	960.512776	0.038518	1.8538E-05	-0.064861	-3.1215E-05	-0.026342	-1.2678E-05	481.26367913793365	56.65	0.68636	56.65	56.424	57.111	0					21	19	2	0	0	0	0.024466	1	6296	6296		18.262	0	1	229630			1528	5210	1037	1037	1803	1803					0.030940439694290944
ALEEMTDIY	9	Unmodified	_ALEEMTDIY_					0	0	0			REV__ENSG00000131781|ENST00000254090|FMO5	REV__ENSG00000131781|ENST00000254090|FMO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2803344726562	2	542.74699	1083.47943	-1.0916	-0.00059247	-1.9996	-0.0010853	-3.0912	-0.0016777	542.7457623359925	61.387	0.58252	61.211	60.955	61.538	-0.1761					32	13	3	0	0	0	0.024506	1	6910	6910		38.806	15.764	1	867960	+		1529	23234	1038	1038	1804	1804					-0.05897325864771119
ALEEWLPR	8	Unmodified	_ALEEWLPR_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2723693847656	2	507.274367	1012.53418	-0.70333	-0.00035678	-3.7235	-0.0018888	-4.4268	-0.0022456	507.2724426666319	24.451	0.96857	24.451	24.166	25.135	0					53	21	4	0	0	0	0.80469	1	1082	1082		58.782	5.8453	1	2079400			1530	1291	1039	1039	1805	1805					0.028414737888056152
ALEGRAGGPA	10	Unmodified	_ALEGRAGGPA_					0	0	0			REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.74127197265625	2	449.740691	897.466829	-0.88915	-0.00039989	1.1309	0.0005086	0.24172	0.00010871	449.7410330188534	40.256	0.68174	40.026	39.697	40.378	-0.23021					40	17	3	0	0	0	0.77808	1	3451	3451		62.107	0	1	2239500	+		1531	30506	1040	1040	1806	1806					0.013994435778499792
ALEGRAGGPA	10	Unmodified	_ALEGRAGGPA_					0	0	0			REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	449.740691	897.466829	-0.21888	-9.844E-05	0.47824	0.00021508	0.25935	0.00011664	449.7407162924568	40.096	0.5213	39.946	39.668	40.189	-0.1497	-0.059255	-0.00017759	NaN	62.107	36	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330000	+		1532	30506	1040	1040							0.013994435778499792
ALEGRAGGPA	10	Unmodified	_ALEGRAGGPA_					0	0	0			REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	REV__ENST00000333602.10_1_3:195635470-195635845:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	449.740691	897.466829	-0.13909	-6.2555E-05	0.35857	0.00016126	0.21948	9.8708E-05	449.7406855406954	40.269	0.59779	40.044	39.734	40.332	-0.225	0.038497	-0.00028523	NaN	62.107	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1412900	+		1533	30506	1040	1040							0.013994435778499792
ALEGRAPRA	9	Unmodified	_ALEGRAPRA_					0	0	0		nc|ENSG00000173264|Q96N19-4|GPR137	nc|ENSG00000173264|Q96N19-4|GPR137	nc|ENSG00000173264|Q96N19-4|GPR137	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.26141357421875	2	470.769783	939.525013	0.022408	1.0549E-05	-0.079563	-3.7456E-05	-0.057155	-2.6907E-05	470.76949322248	26.25	0.36687	26.25	25.957	26.324	0					11	8	2	0	0	0	0.024263	1	1332	1332		51.335	14.176	1	184900			1534	18522	1041	1041	1807	1807					0.05283125223127172
ALEGSRMLL	9	Unmodified	_ALEGSRMLL_					0	0	0			REV__ENST00000294543.10_2_1:20124647-20124686:-|nuORF	REV__ENST00000294543.10_2_1:20124647-20124686:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.751708984375	2	495.276052	988.537551	-0.16014	-7.9311E-05	-0.49787	-0.00024658	-0.658	-0.00032589	495.2755759650655	44.995	0.92814	45.039	44.549	45.478	0.04388					57	26	3	0	0	0	0.024405	1	4342	4342		44.117	0	1	891920	+		1535	29967	1042	1042	1808	1808					0.042824005711622704
ALEGVSSPRR	10	Unmodified	_ALEGVSSPRR_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.27880859375	2	536.298904	1070.58326	-1.05	-0.00056314	3.4742	0.0018632	2.4242	0.0013001	536.300708779351	24.928	0.48221	24.928	24.653	25.135	0					13	10	2	0	0	0	0.03519	1	1098	1098		30.318	13.845	1	42308	+		1536	36472	1043	1043	1809	1809					0.050787620777555276
ALEIALTNN	9	Unmodified	_ALEIALTNN_					0	0	0			REV__ENSG00000187630|ENST00000335125|DHRS4L2	REV__ENSG00000187630|ENST00000335125|DHRS4L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.30230712890625	2	479.763832	957.513111	-0.5259	-0.00025231	0.36751	0.00017632	-0.15839	-7.5988E-05	479.7638998098181	73.422	0.6736	73.157	72.852	73.526	-0.26479					33	16	3	0	0	0	0.024477	1	8603	8603		35.618	8.8222	1	807310	+		1537	27952	1044	1044	1810	1810					0.032654636892857525
ALEKADGLL	9	Unmodified	_ALEKADGLL_					0	0	0			REV__ENSG00000120708|ENST00000442011|TGFBI	REV__ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.286865234375	2	465.26875	928.522947	-1.3421	-0.00062446	2.0479	0.00095281	0.70573	0.00032835	465.26924163077683	75.325	0.47476	75.325	75.076	75.551	0					27	12	3	0	0	0	0.024381	1	9214	9214		45.952	13.997	1	706560	+		1538	22553	1045	1045	1811	1811					0.05582651694669494
ALEKTKKK	8	Unmodified	_ALEKTKKK_					0	0	0		ENSG00000187658|ENST00000409999|C5orf52	ENSG00000187658|ENST00000409999|C5orf52	ENSG00000187658|ENST00000409999|C5orf52	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.30859375	2	473.30821	944.601866	0.22422	0.00010612	-0.065364	-3.0938E-05	0.15885	7.5187E-05	473.3080568036995	18.329	0.54508	18.125	17.965	18.51	-0.20371					19	10	3	0	0	0	1.0009	1	289	289		37.159	0.13063	1	85251			1539	9646	1046	1046	1812	1812					0.1273492371960856
ALELVVFND	9	Unmodified	_ALELVVFND_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2768859863281	2	510.274032	1018.53351	-0.24483	-0.00012493	0.39387	0.00020098	0.14904	7.6051E-05	510.27389802744034	70.72	1.1564	70.731	70.423	71.579	0.011353					52	28	4	0	0	0	0.024294	1	8519	8519		29.15	0	1	1459800			1540	6441	1047	1047	1813	1813					0.02498634349092299
ALEQCLLPA	9	Unmodified	_ALEQCLLPA_					0	0	0			REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.284912109375	2	479.257328	956.500103	0.16834	8.068E-05	-0.070629	-3.385E-05	0.097715	4.683E-05	479.25716421625805	55.737	0.59187	55.581	55.331	55.922	-0.15601					36	15	3	0	0	0	0.024436	1	6136	6136		38.806	15.764	1	1541000	+		1541	35292	1048	1048	1814	1814					0.020113093055442732
ALEQCLLPA	9	Unmodified	_ALEQCLLPA_					0	0	0			REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.257328	956.500103	1.2414	0.00059497	-1.1091	-0.00053155	0.13233	6.3419E-05	479.256680367414	55.64	0.5743	55.64	55.353	55.927	0	0.015376	-0.0010752	NaN	16.473	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446200	+		1542	35292	1048	1048							0.020113093055442732
ALEQCLLPA	9	Unmodified	_ALEQCLLPA_					0	0	0			REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.257328	956.500103	-0.4983	-0.00023881	1.4935	0.00071577	0.9952	0.00047696	479.25774647265655	55.795	0.78691	55.638	55.348	56.135	-0.15655	0.013537	0.0014195	NaN	16.473	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405600	+		1543	35292	1048	1048							0.020113093055442732
ALEQCLLPA	9	Unmodified	_ALEQCLLPA_					0	0	0			REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	REV__ENST00000567555.1_1_16:30077179-30078758:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.257328	956.500103	-0.087159	-4.1772E-05	0.78832	0.00037781	0.70116	0.00033604	479.2574736030783	55.9	0.62154	55.684	55.336	55.958	-0.21607	0.059669	0.00074355	NaN	16.473	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412480	+		1544	35292	1048	1048							0.020113093055442732
ALERAKAK	8	Unmodified	_ALERAKAK_					0	0	0			REV__ENST00000401715.2_1_6:10118966-10119482:+|nuORF	REV__ENST00000401715.2_1_6:10118966-10119482:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.7794189453125	2	443.777077	885.5396	1.469	0.00065191	3.3584	0.0014904	4.8274	0.0021423	443.77844524287576	74.021	1.3754	74.021	73.741	75.116	0					52	32	2	0	0	0	0.87658	1	9044	9044		52.937	0.63753	1	2196900	+		1545	31862	1049	1049	1815	1815					0.09225197371267768
ALESSAPNL	9	Unmodified	_ALESSAPNL_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2347717285156	2	451.234907	900.455261	-0.64095	-0.00028922	0.53311	0.00024056	-0.10785	-4.8664E-05	451.23523254940574	28.55	0.92184	28.55	28.151	29.073	0					63	21	4	0	0	0	0.15029	1	1668	1668		99.375	5.3685	1	6722300			1546	6449	1050	1050	1816	1816					0.001052017638471625
ALESSAPNL	9	Unmodified	_ALESSAPNL_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2347717285156	2	451.234907	900.455261	-0.17797	-8.0307E-05	-0.04386	-1.9791E-05	-0.22183	-0.0001001	451.23486877090727	28.148	0.91606	28.229	27.91	28.826	0.080812					63	21	4	0	0	0	0.29158	1	1583	1583		76.774	2.5191	1	7082000			1547	6449	1050	1050	1817	1817					0.001052017638471625
ALESSILENV	10	Unmodified	_ALESSILENV_					0	0	0		ENST00000393868.6_1_2:84660532-84668399:-|nuORF	ENST00000393868.6_1_2:84660532-84668399:-|nuORF	ENST00000393868.6_1_2:84660532-84668399:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3052368164062	2	537.787504	1073.56045	-0.53027	-0.00028517	-1.5141	-0.00081427	-2.0444	-0.0010994	538.288610407129	68.668	0.86064	68.686	68.314	69.175	0.018913					39	22	3	0	0	0	0.03519	1	8192	8192		32.812	0.85756	1	301780			1548	13473	1051	1051	1818	1818					0.02661698169617921
ALETLVLGAL	10	Unmodified	_ALETLVLGAL_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.30731201171875	2	500.307875	998.601197	-0.5618	-0.00028108	0.51345	0.00025688	-0.048352	-2.4191E-05	500.3077626268624	96.626	0.83404	96.469	96.255	97.089	-0.15646					40	18	3	0	0	0	0.55296	1	11935	11935		82.305	10.428	1	476110	+		1549	22285	1052	1052	1819	1819					0.10184084279910621
ALEVTEEF	8	Unmodified	_ALEVTEEF_					0	0	0		nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3;ENSG00000178385|ENST00000427836|PLEKHM3	nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.75079345703125	2	469.22929	936.444028	-0.9816	-0.00046059	2.6209	0.0012298	1.6393	0.0007692	469.23039901475477	30.267	0.57503	30.267	30.017	30.592	0					18	13	2	0	0	0	0.027866	1	1965	1965		37.028	1.8278	1	90355			1550	8809	1053	1053	1820	1820					-0.026736203302789363
ALFAFWPP	8	Unmodified	_ALFAFWPP_					0	0	0		ENST00000240123.11_2_8:22432693-22432984:+|nuORF	ENST00000240123.11_2_8:22432693-22432984:+|nuORF	ENST00000240123.11_2_8:22432693-22432984:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7785339355469	2	474.752539	947.490525	0.46657	0.0002215	4.4695	0.0021219	4.9361	0.0023434	474.75461799445173	24.255	0.40923	24.334	24.138	24.547	0.078344					13	8	2	0	0	0	0.027866	1	988	988		43.626	8.4253	1	16442			1551	11281	1054	1054	1821	1821					0.014679090823278784
ALFEEELARL	10	Unmodified	_ALFEEELARL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.8250122070312	2	595.824421	1189.63429	-0.23339	-0.00013906	0.045971	2.7391E-05	-0.18741	-0.00011167	595.8243596580395	76.873	0.50694	76.621	76.356	76.863	-0.25162					26	11	3	0	0	0	0.88978	1	9140	9140		54.722	3.1946	1	569960			1552	876	1055	1055	1822	1822					0.04705666331960856
ALFEEELARL	10	Unmodified	_ALFEEELARL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	595.824421	1189.63429	-1.1442	-0.00068177	1.3298	0.00079231	0.18552	0.00011054	595.8251743336334	76.914	0.45114	76.685	76.402	76.853	-0.22843	0.039653	0.0011654	NaN	54.722	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411210			1553	876	1055	1055							0.04705666331960856
ALFEEELARL	10	Unmodified	_ALFEEELARL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	595.824421	1189.63429	-0.11329	-6.7502E-05	0.67846	0.00040424	0.56517	0.00033674	595.8245438916342	76.744	0.45202	76.757	76.448	76.9	0.013504	0.1116	0.00038925	NaN	54.722	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463820			1554	876	1055	1055							0.04705666331960856
ALFEEVPEL	9	Unmodified	_ALFEEVPEL_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.7740478515625	2	523.773865	1045.53318	0.084238	4.4121E-05	-0.25645	-0.00013432	-0.17222	-9.0203E-05	523.7736750521843	86.02	1.3162	86.02	85.5	86.816	0					52	30	2	0	0	0	0.29158	2	10803	10803;10815		76.774	8.2894	1	3637600			1555	5231	1056	1056	1823;1824	1823					0.012232146292262769
ALFEEVPEL	9	Unmodified	_ALFEEVPEL_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.7742309570312	2	523.773865	1045.53318	-0.34357	-0.00017995	0.088584	4.6398E-05	-0.25499	-0.00013355	523.7738359362282	85.97	1.5218	85.925	85.368	86.889	-0.045105					57	35	2	0	0	0	0.35646	1	10757	10757		68.787	12.066	1	3654400			1556	5231	1056	1056	1825	1825					0.012232146292262769
ALFEEVPEL	9	Unmodified	_ALFEEVPEL_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.774169921875	2	523.773865	1045.53318	-0.93771	-0.00049115	0.68608	0.00035935	-0.25163	-0.0001318	523.7741567924857	85.942	1.2294	85.965	85.45	86.68	0.023666					46	28	2	0	0	0	0.11092	2	10715	10715;10728		108.09	15.435	1	3865400			1557	5231	1056	1056	1826;1827	1826					0.012232146292262769
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7910461425781	2	502.792392	1003.57023	-0.98566	-0.00049558	-0.43422	-0.00021832	-1.4199	-0.0007139	502.79190808898636	62.367	1.5068	62.367	61.758	63.265	0					81	42	4	0	0	0	0.021872	5	7258	7240;7249;7258;7271;7285		148.04	62.683	1	17959000			1558	6622	1057	1057	1828;1829;1830;1831;1832	1830					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7910461425781	2	502.792392	1003.57023	-1.2968	-0.00065201	-0.73807	-0.0003711	-2.0348	-0.0010231	502.79184270070397	62.548	1.1065	62.308	61.714	62.821	-0.23926					81	31	4	0	0	0	0.03849	4	7277	7243;7254;7277;7293		134.81	52.506	1	9458500			1559	6622	1057	1057	1833;1834;1835;1836	1835					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7906494140625	2	502.792392	1003.57023	-0.83087	-0.00041776	-1.3236	-0.00066549	-2.1545	-0.0010832	502.79139638229304	62.25	1.2471	62.313	61.735	62.982	0.062763					70	32	3	0	0	0	0.03849	6	7165	7148;7157;7165;7175;7188;7203		134.81	54.257	1	10218000			1560	6622	1057	1057	1837;1838;1839;1840;1841;1842	1839					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.79022216796875	2	502.792392	1003.57023	-0.14063	-7.0707E-05	-1.2443	-0.00062565	-1.385	-0.00069635	502.7915501714583	62.489	0.72205	62.268	61.767	62.489	-0.22097					41	19	3	0	0	0	0.14024	1	7035	7035		101.6	44.88	1	2263100			1561	6622	1057	1057	1843	1843					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.7916564941406	2	502.792392	1003.57023	-0.87859	-0.00044175	-0.036137	-1.817E-05	-0.91473	-0.00045992	502.7922174924213	62.461	0.67441	62.278	61.798	62.473	-0.18386					39	18	3	0	0	0	0.15366	3	7028	7028;7039;7050		98.629	30.145	1	3742200			1562	6622	1057	1057	1844;1845;1846	1844					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.7908020019531	2	502.792392	1003.57023	-0.6919	-0.00034788	-0.44653	-0.00022451	-1.1384	-0.00057239	502.7920287203728	62.566	0.66046	62.308	61.858	62.518	-0.25824					34	17	3	0	0	0	0.057894	1	7040	7040		125.81	23.041	1	2347300			1563	6622	1057	1057	1847	1847					0.06858930965665877
ALFFCYLLLT	10	Unmodified	_ALFFCYLLLT_					0	0	0			REV__ENSG00000134901|ENST00000376004|POGLUT2	REV__ENSG00000134901|ENST00000376004|POGLUT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.8114929199219	3	401.887594	1202.64095	-0.7286	-0.00029282	3.4087	0.0013699	2.6801	0.0010771	401.8890423662554	28.2	0.84358	28.048	27.769	28.612	-0.15195					51	20	4	0	0	0	0.03519	1	1654	1654		20.837	0	1	449570	+		1564	23495	1058	1058	1848	1848					0.04773887958981504
ALFGALFLA	9	Unmodified	_ALFGALFLA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.77386474609375	2	461.773471	921.53239	-0.19799	-9.1426E-05	0.2593	0.00011974	0.061307	2.831E-05	461.7734638822048	102.02	0.88459	102.02	101.68	102.57	0					36	19	3	0	0	0	0.80342	1	13062	13062		39.021	0.21535	1	1147700			1565	2265	1059	1059	1849	1849					0.06848464770837381
ALFGALFLA	9	Unmodified	_ALFGALFLA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7736511230469	2	461.773471	921.53239	-0.0097261	-4.4912E-06	0.17299	7.9882E-05	0.16326	7.5391E-05	461.7734012798388	101.96	0.89851	101.97	101.65	102.55	0.0073471					40	20	3	0	0	0	0.65391	1	13035	13035		49.211	3.2588	1	969980			1566	2265	1059	1059	1850	1850					0.06848464770837381
ALFGSRIEV	9	Unmodified	_ALFGSRIEV_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2951965332031	2	496.282192	990.549831	0.19198	9.5275E-05	-0.61338	-0.00030441	-0.4214	-0.00020914	496.28169130490517	61.504	0.49038	61.278	61.082	61.573	-0.22663					19	12	2	0	0	0	0.018452	1	7079	7079		110.12	3.7047	1	456960	+		1567	25866	1060	1060	1851	1851					0.054177603058633395
ALFGTILEL	9	Unmodified	_ALFGTILEL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.7906799316406	2	488.789318	975.564084	0.6985	0.00034142	-0.93533	-0.00045718	-0.23683	-0.00011576	488.78893072011454	100.45	0.37044	100.33	100.15	100.52	-0.12504					21	9	3	0	0	0	0.29104	2	12471	12459;12471		76.847	19.035	1	350540			1568	1233	1061	1061	1852;1853	1853					0.075324127341446
ALFGTILEL	9	Unmodified	_ALFGTILEL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	488.789318	975.564084	0.25747	0.00012585	-0.022969	-1.1227E-05	0.2345	0.00011462	488.78909494230425	100.47	0.45961	100.34	100.1	100.56	-0.13364	-0.015604	0.00041581	NaN	76.847	18	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211200			1569	1233	1061	1061							0.075324127341446
ALFILKTFI	9	Unmodified	_ALFILKTFI_					0	0	0			REV__ENST00000431981.2_1_9:35786681-35786738:+|nuORF	REV__ENST00000431981.2_1_9:35786681-35786738:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.3399047851562	2	533.338978	1064.6634	-0.41683	-0.00022231	2.166	0.0011552	1.7491	0.00093288	533.3399660774493	98.104	0.8865	97.939	97.578	98.465	-0.16521					55	21	3	0	0	0	0.92825	1	12115	12115		30.504	3.7075	1	925780	+		1570	32372	1062	1062	1854	1854					0.133658554188969
ALFIREKYMA	10	Unmodified	_ALFIREKYMA_					0	0	0		nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;ENST00000525415.1_1_1:110168821-110169689:+|nuORF	nc|ENSG00000116337|Q01433-5|AMPD2	nc|ENSG00000116337|Q01433-5|AMPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.26092529296875	3	414.561881	1240.66381	0.19721	8.1757E-05	0.20166	8.3602E-05	0.39888	0.00016536	414.56189493747934	20.169	0.68472	20.169	19.831	20.516	0					22	13	2	0	0	0	0.03519	1	515	515		49.536	20.959	1	88188			1571	3545	1063	1063	1855	1855					0.053109070764321586
ALFIREKYMA	10	Unmodified	_ALFIREKYMA_					0	0	0		nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;ENST00000525415.1_1_1:110168821-110169689:+|nuORF	nc|ENSG00000116337|Q01433-5|AMPD2	nc|ENSG00000116337|Q01433-5|AMPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.26104736328125	3	414.561881	1240.66381	1.423	0.00058993	-0.85863	-0.00035595	0.56439	0.00023397	414.56133434166594	20.284	0.59158	20.353	20.069	20.661	0.068901					29	11	3	0	0	0	0.03519	1	485	485		41.427	7.505	1	87213			1572	3545	1063	1063	1856	1856					0.053109070764321586
ALFKLLSM	8	Unmodified	_ALFKLLSM_					0	0	0			REV__MAGEA10|p.R307S|1|0.13|ENSG00000124260|chrX:152134700-152134700|C/A|missense_variant	REV__MAGEA10|p.R307S|1|0.13|ENSG00000124260|chrX:152134700-152134700|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.77337646484375	2	461.775157	921.53576	0.17835	8.2356E-05	-4.0089	-0.0018512	-3.8305	-0.0017688	461.7732035959884	101.83	0.7794	101.7	101.41	102.19	-0.12666					39	19	4	0	0	0	0.95679	1	12676	12676		44.117	1.6423	1	870050	+		1573	22756	1064	1064	1857	1857					0.07185391553218778
ALFLAGFLA	9	Unmodified	_ALFLAGFLA_					0	0	0			REV__ENSG00000100979|ENST00000372431|PLTP	REV__ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.77392578125	2	461.773471	921.53239	-0.19799	-9.1426E-05	0.2593	0.00011974	0.061307	2.831E-05	461.7734638822048	102.02	0.88459	102.02	101.68	102.57	0					36	19	3	0	0	0	0.65391	1	13051	13051		49.211	0	1	1147700	+		1574	21168	1065	1065	1858	1858					0.06848464770860119
ALFLAGFLA	9	Unmodified	_ALFLAGFLA_					0	0	0			REV__ENSG00000100979|ENST00000372431|PLTP	REV__ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.77386474609375	2	461.773471	921.53239	-0.0097261	-4.4912E-06	0.17299	7.9882E-05	0.16326	7.5391E-05	461.7734012798388	101.96	0.89851	101.97	101.65	102.55	0.0073471					40	20	3	0	0	0	0.65391	1	13023	13023		49.211	10.189	1	969980	+		1575	21168	1065	1065	1859	1859					0.06848464770860119
ALFLAGFLA	9	Unmodified	_ALFLAGFLA_					0	0	0			REV__ENSG00000100979|ENST00000372431|PLTP	REV__ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.77349853515625	2	461.773471	921.53239	0.74968	0.00034618	-0.65348	-0.00030176	0.096198	4.4422E-05	461.77298981619765	102.05	0.83698	102.05	101.71	102.55	-0.0054474					44	18	4	0	0	0	0.48384	3	12989	12989;13000;13013		60.404	6.7363	1	1118500	+		1576	21168	1065	1065	1860;1861;1862	1860					0.06848464770860119
ALFLERLN	8	Unmodified	_ALFLERLN_					0	0	0			REV__ENSG00000237700|ENST00000437300|PRAMEF33	REV__ENSG00000237700|ENST00000437300|PRAMEF33	MSMS	OPSCC_40_ClassI_Rep-2	5	488.30230712890625	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.086	1	97.962	97.462	98.462	-0.12413								0	0	0	0.60555	1	12152	12152		47.916	5.4411	1		+		1577	27941	1066	1066	1863	1863					0.0666206416847217
ALFLFLPI	8	Unmodified	_ALFLFLPI_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.2631530761719	2	467.29404	932.573526	0.25707	0.00012013	1.8603	0.0008693	2.1174	0.00098943	467.2939921617296	50.545	0.25921	50.433	50.379	50.638	-0.11163					8	6	2	0	0	0	0.027866	1	5176	5176		33.493	16.788	1	121260	+		1578	20541	1067	1067	1864	1864					0.10454225810315165
ALFLKRPK	8	Unmodified	_ALFLKRPK_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1;nc|ENSG00000173638|P41440-2|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7843322753906	2	486.821287	971.628021	-0.15526	-7.5585E-05	-3.0992	-0.0015087	-3.2544	-0.0015843	486.81945500974945	100.83	0.21352	100.83	100.72	100.93	-0.0054474					6	4	2	0	0	0	0.027866	1	12826	12826		26.796	1.3459	1	130640			1579	8394	1068	1068	1865	1865					0.14107237681741935
ALFLLLLSGP	10	Unmodified	_ALFLLLLSGP_					0	0	0			REV__ENSG00000145423|ENST00000274063|SFRP2	REV__ENSG00000145423|ENST00000274063|SFRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8169555664062	2	522.328611	1042.64267	-1.4498	-0.0007573	2.3745	0.0012403	0.92464	0.00048297	522.3295877632297	65.193	0.41348	64.931	64.758	65.172	-0.2626					17	10	2	0	0	0	0.03519	1	7658	7658		37.159	14.117	1	432770	+		1580	24407	1069	1069	1866	1866					0.12305265039231017
ALFLLPAVAG	10	Unmodified	_ALFLLPAVAG_					0	0	0		ENST00000471771.5_1_13:28024041-28024170:-|nuORF	ENST00000471771.5_1_13:28024041-28024170:-|nuORF	ENST00000471771.5_1_13:28024041-28024170:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3086853027344	2	486.299853	970.585153	-0.096969	-4.7156E-05	-0.51057	-0.00024829	-0.60754	-0.00029545	486.29949345931703	66.011	0.60495	65.738	65.498	66.103	-0.27282					27	15	2	0	0	0	0.03519	1	7776	7776		26.796	7.4361	1	687610			1581	14967	1070	1070	1867	1867					0.09868422833653767
ALFLTKALL	9	Unmodified	_ALFLTKALL_					0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.29754638671875	2	495.323328	988.632104	-0.31394	-0.0001555	2.9577	0.001465	2.6438	0.0013095	495.3234181318031	54.575	0.43779	54.575	54.285	54.723	0					21	12	3	0	0	0	0.023417	1	5938	5938		68.787	2.9837	1	246760	+		1582	26896	1071	1071	1868	1868					0.13733282384794165
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2768859863281	2	481.276909	960.539266	0.58977	0.00028384	-0.90387	-0.00043501	-0.3141	-0.00015117	481.2763797871216	51.17	0.99214	51.17	50.675	51.667	0					63	27	4	0	0	0	0.013492	4	5404	5404;5415;5427;5441		177.71	44.238	1	6414000			1583	1212;1317	1072	1072	1869;1870;1871;1872	1869					0.05741777651417124
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2770690917969	2	481.276909	960.539266	-0.367	-0.00017663	-0.16287	-7.8385E-05	-0.52986	-0.00025501	481.27679715704386	51.391	0.95135	51.242	50.758	51.709	-0.14916					60	26	4	0	0	0	0.015769	3	5403	5403;5414;5426		157.99	33.395	1	6679500			1584	1212;1317	1072	1072	1873;1874;1875	1873					0.05741777651417124
ALFNGAQKL	9	Unmodified	_ALFNGAQKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2770690917969	2	481.276909	960.539266	-1.0387	-0.00049992	0.62721	0.00030186	-0.41153	-0.00019806	481.2771635082134	51.083	0.8594	51.17	50.82	51.679	0.087006					56	23	4	0	0	0	0.013018	3	5311	5311;5322;5333		173.85	44.988	1	6329900			1585	1212;1317	1072	1072	1876;1877;1878	1876					0.05741777651417124
ALFPAPLAQI	10	Unmodified	_ALFPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.8099975585938	2	520.810585	1039.60662	-1.0063	-0.00052411	0.54722	0.000285	-0.45911	-0.00023911	520.8106434263104	92.336	1.527	92.336	91.945	93.472	0					98	36	4	0	0	0	0.36026	5	11723	11699;11710;11723;11735;11748		102.77	41.801	1	3080600			1586	7664	1073	1073	1879;1880;1881;1882;1883	1881					0.08839807862364069
ALFPAPLAQI	10	Unmodified	_ALFPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.8096923828125	2	520.810585	1039.60662	-0.53375	-0.00027798	-0.032606	-1.6982E-05	-0.56636	-0.00029496	520.8103106775444	92.336	1.5243	92.328	91.924	93.448	-0.0082932					98	36	4	0	0	0	0.36026	4	11669	11669;11679;11692;11706		102.77	34.056	1	3419000			1587	7664	1073	1073	1884;1885;1886;1887	1884					0.08839807862364069
ALFPAPLAQI	10	Unmodified	_ALFPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.810302734375	2	520.810585	1039.60662	-0.020342	-1.0594E-05	-0.33555	-0.00017476	-0.3559	-0.00018535	520.810176983407	92.311	1.4352	92.32	91.959	93.394	0.0094147					105	34	4	0	0	0	0.13777	4	11641	11618;11629;11641;11653		128.86	62.432	1	3209800			1588	7664	1073	1073	1888;1889;1890;1891	1890					0.08839807862364069
ALFPAPLAQI	10	Unmodified	_ALFPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.810585	1039.60662	-1.8426	-0.00095962	1.9418	0.0010113	0.099229	5.168E-05	520.8109921672957	92.202	1.5148	92.059	91.704	93.219	-0.14356	-0.15133	0.0018773	NaN	128.86	73	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687640			1589	7664	1073	1073							0.08839807862364069
ALFPAPLAQI	10	Unmodified	_ALFPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.810585	1039.60662	0.064139	3.3404E-05	-0.10027	-5.2221E-05	-0.036129	-1.8816E-05	520.8099100218924	92.187	1.4746	92.064	91.803	93.278	-0.12242	-0.14547	-0.00024974	NaN	128.86	78	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600960			1590	7664	1073	1073							0.08839807862364069
ALFPAPLAQI	10	Unmodified	_ALFPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.810585	1039.60662	0.24679	0.00012853	-0.46004	-0.00023959	-0.21325	-0.00011106	520.8098549039245	92.294	1.3005	92.153	91.835	93.136	-0.14131	-0.057267	-0.00062449	NaN	128.86	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518180			1591	7664	1073	1073							0.08839807862364069
ALFPERITV	9	Unmodified	_ALFPERITV_					0	0	0		nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1	nc|ENSG00000137343|Q5SQI0|ATAT1	nc|ENSG00000137343|Q5SQI0|ATAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3048095703125	2	523.305667	1044.59678	-0.49753	-0.00026036	-0.14537	-7.6073E-05	-0.64291	-0.00033644	523.3054421349055	67.266	0.76349	66.978	66.707	67.47	-0.28834					58	18	4	0	0	0	0.59498	1	7992	7992		53.089	1.8963	1	4348200			1592	18312	1074	1074	1892	1892					0.07626619856978323
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7815246582031	2	450.781296	899.54804	0.39999	0.00018031	-0.60953	-0.00027477	-0.20954	-9.4458E-05	450.7810066200751	98.419	2.2414	98.419	97.504	99.746	0					152	51	4	0	0	0	0.0402	8	12548	12537;12548;12560;12572;12584;12596;12608;12620		133.45	47.54	1	15753000			1593	7641	1075	1075	1893;1894;1895;1896;1897;1898;1899;1900	1894					0.09424751287883737
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.7817687988281	2	450.781296	899.54804	0.48683	0.00021945	-0.67885	-0.00030601	-0.19202	-8.6558E-05	450.7809679425925	98.322	2.5051	98.333	97.238	99.743	0.010231					158	57	4	0	0	0	0.0402	8	12491	12491;12501;12513;12525;12537;12550;12562;12575		133.45	47.54	1	14585000			1594	7641	1075	1075	1901;1902;1903;1904;1905;1906;1907;1908	1901					0.09424751287883737
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.7813415527344	2	450.781296	899.54804	0.72312	0.00032597	-0.9463	-0.00042658	-0.22319	-0.00010061	450.780847414995	98.422	2.4446	98.42	97.456	99.901	-0.0020828					165	56	4	0	0	0	0.0402	8	12468	12468;12477;12489;12501;12513;12525;12537;12551		133.45	60.83	1	14040000			1595	7641	1075	1075	1909;1910;1911;1912;1913;1914;1915;1916	1909					0.09424751287883737
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7815856933594	2	450.781296	899.54804	1.0112	0.00045583	-0.67273	-0.00030325	0.33846	0.00015257	450.7808338649237	98.263	1.1511	98.127	97.82	98.972	-0.13625					79	27	4	0	0	0	0.0402	5	12143	12143;12152;12164;12176;12188		133.45	47.54	1	2553500			1596	7641	1075	1075	1917;1918;1919;1920;1921	1917					0.09424751287883737
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.7815246582031	2	450.781296	899.54804	1.2134	0.00054697	-0.78727	-0.00035489	0.42611	0.00019208	450.78078103570544	98.256	1.0628	98.132	97.849	98.911	-0.12413					73	25	4	0	0	0	0.0402	5	12160	12151;12160;12172;12184;12196		133.45	47.54	1	2609900			1597	7641	1075	1075	1922;1923;1924;1925;1926	1923					0.09424751287883737
ALFPGVALL	9	Unmodified	_ALFPGVALL_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7812805175781	2	450.781296	899.54804	-0.10638	-4.7954E-05	0.44409	0.00020019	0.33771	0.00015223	450.78137787137337	98.343	1.3791	98.177	97.868	99.247	-0.1652					78	32	4	0	0	0	0.0402	5	12150	12139;12150;12162;12173;12185		133.45	47.54	1	2751200			1598	7641	1075	1075	1927;1928;1929;1930;1931	1928					0.09424751287883737
ALFPKFLS	8	Unmodified	_ALFPKFLS_					0	0	0			REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7734375	2	461.773471	921.53239	-0.19799	-9.1426E-05	0.2593	0.00011974	0.061307	2.831E-05	461.7734638822048	102.02	0.88459	102.02	101.68	102.57	0					36	19	3	0	0	0	1.0338	1	13088	13088		31.955	0	1	1147700	+		1599	34057	1076	1076	1932	1932					0.0684846477084875
ALFPLLGVL	9	Unmodified	_ALFPLLGVL_					0	0	0		ENSG00000160588|ENST00000278949|MPZL3;nc|ENSG00000160588|Q6UWV2-2|MPZL3;nc|ENSG00000160588|Q6UWV2-3|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7909851074219	2	471.804771	941.59499	-0.19666	-9.2783E-05	1.3444	0.00063428	1.1477	0.0005415	471.80541209448984	47.818	0.26615	47.878	47.769	48.036	0.059097					13	7	2	0	0	0	0.023092	1	4763	4763		60.404	0	1	488980			1600	6824	1077	1077	1933	1933					0.12185610839048877
ALFQHITAL	9	Unmodified	_ALFQHITAL_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2925720214844	2	507.292559	1012.57057	0.3888	0.00019723	-0.64433	-0.00032687	-0.25553	-0.00012963	507.29215823484805	65.971	0.58044	65.971	65.643	66.224	0					33	14	3	0	0	0	0.03849	2	7851	7833;7851		134.81	38.62	1	3052600			1601	1137	1078	1078	1934;1935	1935					0.06478350685495116
ALFQHITAL	9	Unmodified	_ALFQHITAL_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2925720214844	2	507.292559	1012.57057	-0.25329	-0.00012849	-0.042423	-2.1521E-05	-0.29571	-0.00015001	507.29245372920894	66.285	0.57885	66.004	65.634	66.213	-0.28148					30	14	3	0	0	0	0.12602	2	7851	7851;7868		104.75	24.409	1	2736500			1602	1137	1078	1078	1936;1937	1936					0.06478350685495116
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.8241577148438	2	527.824027	1053.6335	-0.79754	-0.00042096	0.55632	0.00029364	-0.24122	-0.00012732	527.8242033524097	68.43	1.3707	68.43	67.831	69.202	0					126	35	7	0	0	0	0.062871	5	8219	8183;8194;8207;8219;8232		123.99	59.145	1	9714800			1603	4466	1079	1079	1938;1939;1940;1941;1942	1941					0.10882916473565274
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.823974609375	2	527.824027	1053.6335	-0.10261	-5.4158E-05	-0.15047	-7.9421E-05	-0.25307	-0.00013358	527.8238750993135	68.788	1.7371	68.495	67.896	69.634	-0.29267					125	44	5	0	0	0	0.062871	6	8198	8198;8210;8219;8231;8244;8259		123.99	54.361	1	10724000			1604	4466	1079	1079	1943;1944;1945;1946;1947;1948	1943					0.10882916473565274
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.82373046875	2	527.824027	1053.6335	0.33856	0.0001787	-0.50937	-0.00026886	-0.1708	-9.0154E-05	527.8236363569429	68.523	1.8608	68.542	67.855	69.716	0.018913					149	48	7	0	0	0	0.088511	5	8118	8118;8129;8142;8154;8169		114.59	46.435	1	10225000			1605	4466	1079	1079	1949;1950;1951;1952;1953	1949					0.10882916473565274
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2385864257812	2	527.824027	1053.6335	0.1099	5.801E-05	-0.16771	-8.8522E-05	-0.057807	-3.0512E-05	527.8237236208394	68.633	0.799	68.391	68.033	68.832	-0.24277					39	19	3	0	0	0	0.024262	1	7957	7957		68.485	18.46	1	574040			1606	4466	1079	1079	1954	1954					0.10882916473565274
ALFSELLD	8	Unmodified	_ALFSELLD_					0	0	0			REV__ENST00000471669.1_1_9:4646457-4666250:-|nuORF	REV__ENST00000471669.1_1_9:4646457-4666250:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.2816162109375	2	454.242201	906.469849	0.90134	0.00040943	0.76632	0.00034809	1.6677	0.00075752	454.24242842735947	49.298	0.51393	49.298	49.106	49.62	0					20	13	2	0	0	0	0.027866	1	5060	5060		35.201	0	1	119250	+		1607	32725	1080	1080	1955	1955					0.012872739120098231
ALFSQDISV	9	Unmodified	_ALFSQDISV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2584533691406	2	490.258382	978.502212	-0.31937	-0.00015657	0.36804	0.00018044	0.048678	2.3865E-05	490.25833968779074	75.055	1.2109	75.055	74.34	75.551	0					78	30	4	0	0	0	0.013293	3	9192	9192;9202;9215		185.55	46.724	1	4507400			1608	6213	1081	1081	1956;1957;1958	1956					0.012100613149982564
ALFSQDISV	9	Unmodified	_ALFSQDISV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2582092285156	2	490.258382	978.502212	-0.23733	-0.00011635	0.084621	4.1486E-05	-0.1527	-7.4865E-05	490.25817402331677	75.343	1.012	75.099	74.465	75.477	-0.24455					67	25	4	0	0	0	0.013065	4	9202	9192;9202;9214;9227		171.53	54.165	1	4256900			1609	6213	1081	1081	1959;1960;1961;1962	1960					0.012100613149982564
ALFSQDISV	9	Unmodified	_ALFSQDISV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2584228515625	2	490.258382	978.502212	-0.25541	-0.00012522	0.16138	7.9116E-05	-0.094031	-4.61E-05	490.25819806882754	75.101	1.1067	75.112	74.397	75.504	0.010376					58	27	4	0	0	0	0.014454	4	9144	9122;9132;9144;9158		200.16	55.867	1	4355900			1610	6213	1081	1081	1963;1964;1965;1966	1965					0.012100613149982564
ALFSQDISV	9	Unmodified	_ALFSQDISV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.25823974609375	2	490.258382	978.502212	-0.44539	-0.00021836	0.28084	0.00013769	-0.16455	-8.0672E-05	490.2583552616084	75.366	0.77659	75.093	74.766	75.542	-0.27266					53	18	4	0	0	0	0.025498	2	8896	8896;8908		145.16	37.639	1	1608700			1611	6213	1081	1081	1967;1968	1967					0.012100613149982564
ALFSQDISV	9	Unmodified	_ALFSQDISV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2579345703125	2	490.258382	978.502212	-0.1596	-7.8243E-05	-0.049799	-2.4414E-05	-0.20939	-0.00010266	490.25820673680767	75.354	0.85905	75.096	74.737	75.596	-0.25866					51	20	4	0	0	0	0.053401	2	8910	8910;8925		127.46	42.546	1	1848500			1612	6213	1081	1081	1969;1970	1969					0.012100613149982564
ALFSQDISV	9	Unmodified	_ALFSQDISV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.25836181640625	2	490.258382	978.502212	0.49137	0.0002409	-0.90165	-0.00044204	-0.41028	-0.00020114	490.2578362530781	75.225	0.92709	75.05	74.732	75.659	-0.17548					54	22	5	0	0	0	0.015064	2	8885	8874;8885		190.52	65.924	1	1865300			1613	6213	1081	1081	1971;1972	1972					0.012100613149982564
ALFTKGWEMP	10	Unmodified	_ALFTKGWEMP_					0	0	0			REV__ENSG00000198964|ENST00000361781|SGMS1	REV__ENSG00000198964|ENST00000361781|SGMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.749755859375	2	590.296985	1178.57942	-0.60752	-0.00035862	-2.4536	-0.0014484	-3.0611	-0.001807	590.2946200248056	64.03	0.38532	63.772	63.531	63.916	-0.25824					11	9	2	0	0	0	0.03519	1	7231	7231		45.972	10.354	1	70080	+		1614	28532	1082	1082	1973	1973					-0.0027304374032155465
ALFTLTLAQV	10	Unmodified	_ALFTLTLAQV_					0	0	0			REV__nc|ENSG00000134851|Q9HC07-2|TMEM165	REV__nc|ENSG00000134851|Q9HC07-2|TMEM165	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8211059570312	2	538.82115	1075.62775	-1.013	-0.0005458	0.79834	0.00043016	-0.21462	-0.00011564	538.8214959276675	64.635	1.0467	64.635	64.311	65.358	0					58	28	3	0	0	0	1.0508	1	7647	7647		39.253	0	1	8369400	+		1615	23487	1083	1083	1974	1974					0.09295773171243127
ALFTRRIL	8	Unmodified	_ALFTRRIL_					0	0	0			REV__ENST00000368966.9_3_6:109615628-109650288:+|nuORF	REV__ENST00000368966.9_3_6:109615628-109650288:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2973937988281	2	495.316369	988.618185	0.76599	0.00037941	4.384	0.0021714	5.15	0.0025509	495.31851503419637	54.314	0.36563	54.412	54.26	54.626	0.098015					24	10	3	0	0	0	0.027866	1	5854	5854		50.025	0	1	459860	+		1616	31077	1084	1084	1975	1975					0.12342049676362876
ALGAAGRAH	9	Unmodified	_ALGAAGRAH_					0	0	0		ENST00000264716.8_1_2:28615948-28616017:+|nuORF	ENST00000264716.8_1_2:28615948-28616017:+|nuORF	ENST00000264716.8_1_2:28615948-28616017:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.2305908203125	2	412.230294	822.446034	-0.48948	-0.00020178	1.1872	0.00048941	0.69775	0.00028763	412.23071113677236	27.154	2.5776	27.235	26.249	28.827	0.081293					138	64	4	0	0	0	0.78069	1	1465	1465		40.573	3.5441	1	8910500			1617	11571	1085	1085	1976	1976					0.027708979888416252
ALGAFHRHS	9	Unmodified	_ALGAFHRHS_					0	0	0		ENST00000588919.5_1_19:1105440-1106636:+|nuORF	ENST00000588919.5_1_19:1105440-1106636:+|nuORF	ENST00000588919.5_1_19:1105440-1106636:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7971496582031	2	498.262125	994.509697	0.47744	0.00023789	-2.8164	-0.0014033	-2.339	-0.0011654	498.2604731368995	58.435	0.37373	58.527	58.371	58.745	0.091217					12	9	2	0	0	0	0.024487	1	6531	6531		24.203	0	1	82381			1618	17295	1086	1086	1977	1977					0.012222584259461655
ALGALFGAGVL	11	Unmodified	_ALGALFGAGVL_					0	0	0		ENSG00000089060|ENST00000680972|SLC8B1	ENSG00000089060|ENST00000680972|SLC8B1	ENSG00000089060|ENST00000680972|SLC8B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3088073730469	2	494.794935	987.575317	0.031462	1.5567E-05	1.404	0.00069469	1.4354	0.00071025	494.79538894516764	68.771	0.87122	68.771	68.295	69.166	0					31	22	2	0	0	0	0.02474	1	8215	8215		31.955	0	1	197650			1619	1892	1087	1087	1978	1978					0.08103234828286077
ALGAQRDLN	9	Unmodified	_ALGAQRDLN_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.3005065917969	2	479.259248	956.503943	-0.68221	-0.00032696	0.55431	0.00026566	-0.1279	-6.1297E-05	479.2594007170493	33.286	0.28028	33.12	32.998	33.278	-0.16565					12	6	2	0	0	0	0.024457	1	2344	2344		37.159	19.794	1	191780	+		1620	26568	1088	1088	1979	1979					0.023951151236133228
ALGATECLL	9	Carbamidomethyl (C)	_ALGATEC(Carbamidomethyl (C))LL_	ALGATEC(1)LL		ALGATEC(53)LL		0	1	0		ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.24578857421875	2	474.24696	946.479368	-0.1436	-6.8101E-05	-3.3747	-0.0016004	-3.5183	-0.0016685	474.24528555569225	45.76	0.99561	45.608	45.178	46.174	-0.15156					69	28	4	0	0	0	0.59099	1	4460	4460		53.351	7.3792	1	2968300			1621	10371	1089	1089	1980	1980	146				0.003987189258850776
ALGATFTFDP	10	Unmodified	_ALGATFTFDP_					0	0	0			REV__ENST00000547997.5_1_12:95650374-95694446:+|nuORF	REV__ENST00000547997.5_1_12:95650374-95694446:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2615356445312	2	520.258382	1038.50221	0.08468	4.4055E-05	-2.4643	-0.0012821	-2.3796	-0.001238	520.2573602342491	39.396	0.89553	39.17	38.806	39.701	-0.2257					50	23	3	0	0	0	0.03519	1	3391	3391		20.947	0	1	613300	+		1622	20033	1090	1090	1981	1981					-0.015499386850024166
ALGCLLAHF	9	Unmodified	_ALGCLLAHF_					0	0	0		ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7539367675781	2	472.754756	943.494958	-0.53814	-0.00025441	-2.1707	-0.0010262	-2.7089	-0.0012806	472.7538156002825	39.589	1.3408	39.49	39.091	40.431	-0.098755					113	36	6	0	0	0	0.80342	1	3383	3383		39.021	3.4032	1	12900000			1623	15983	1091	1091	1982	1982					0.020950502335722376
ALGCLLAHF	9	Unmodified	_ALGCLLAHF_					0	0	0		ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7537536621094	2	472.754756	943.494958	-0.39794	-0.00018813	-2.1374	-0.0010104	-2.5353	-0.0011986	472.7538756619408	39.8	1.1404	39.823	39.455	40.596	0.023727					86	31	4	0	0	0	0.80342	1	3362	3362		39.021	1.993	1	14108000			1624	15983	1091	1091	1983	1983					0.020950502335722376
ALGDLLGTGL	10	Unmodified	_ALGDLLGTGL_					0	0	0		ENST00000484228.1_1_1:205760663-205764640:-|nuORF;ENST00000468057.5_1_1:205760663-205770562:-|nuORF;ENSG00000133065|ENST00000367137|SLC41A1	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2870788574219	2	465.26875	928.522947	0.41864	0.00019478	1.5413	0.00071713	1.96	0.0009119	465.2685911339171	74.742	1.0317	74.742	74.084	75.116	0					41	24	3	0	0	0	0.03519	1	9204	9204		34.173	0	1	348060			1625	4677	1092	1092	1984	1984					0.05582651694669494
ALGDLSYLAN	10	Unmodified	_ALGDLSYLAN_					0	0	0			REV__ENSG00000116903|ENST00000366645|EXOC8	REV__ENSG00000116903|ENST00000366645|EXOC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7725219726562	2	518.769114	1035.52368	-0.17801	-9.2345E-05	-1.0674	-0.00055376	-1.2454	-0.0006461	519.2713657582514	72.43	0.3746	72.153	71.908	72.282	-0.2769					16	8	3	0	0	0	0.03519	1	8466	8466		40.778	0	1	77116	+		1626	22313	1093	1093	1985	1985					0.007334463437018712
ALGDVDEEPE	10	Unmodified	_ALGDVDEEPE_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.8131103515625	2	537.235301	1072.45605	-0.52865	-0.00028401	1.8054	0.0009699	1.2767	0.00068589	537.236279017272	71.406	0.56701	71.416	71.086	71.653	0.010735					23	14	2	0	0	0	0.03519	1	8562	8562		40.778	0	1	381010	+		1627	26425	1094	1094	1986	1986					-0.07728048377771302
ALGERLESL	9	Unmodified	_ALGERLESL_					0	0	0			REV__nc|ENSG00000051128|Q9NSC5-5|HOMER3	REV__nc|ENSG00000051128|Q9NSC5-5|HOMER3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3010559082031	2	494.277106	986.53966	0.079125	3.911E-05	-3.9118	-0.0019335	-3.8327	-0.0018944	494.27259904473544	96.248	0.66868	96.111	95.81	96.479	-0.13671					28	15	3	0	0	0	0.024447	1	11911	11911		13.454	0	1	114020	+		1628	20166	1095	1095	1987	1987					0.04585152580614249
ALGEYREL	8	Unmodified	_ALGEYREL_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.96112060546875	2	475.750724	949.486896	2.3404	0.0011134	-2.4258	-0.0011541	-0.085429	-4.0643E-05	475.7494506398775	63.775	0.43198	63.775	63.558	63.99	0					18	11	2	0	0	0	0.027866	1	7443	7443		16.473	0	1	172440	+		1629	20343	1096	1096	1988	1988					0.010131945178045498
ALGFLVPPK	9	Unmodified	_ALGFLVPPK_					0	0	0		NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2639465332031	2	471.294571	940.574589	-0.29417	-0.00013864	-3.7821	-0.0017825	-4.0763	-0.0019211	471.2925665796284	62.861	0.40308	62.861	62.651	63.054	0					16	9	2	0	0	0	0.024357	1	7325	7325		44.531	12.576	1	219670			1630	18890	1097	1097	1989	1989					0.1019244017921892
ALGFLVPPK	9	Unmodified	_ALGFLVPPK_					0	0	0		NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2636413574219	2	471.294571	940.574589	-0.16632	-7.8387E-05	-4.2341	-0.0019955	-4.4004	-0.0020739	471.29236449910036	63.134	0.48552	62.895	62.575	63.06	-0.23926					17	11	2	0	0	0	0.024258	1	7325	7325		54.765	13.987	1	186250			1631	18890	1097	1097	1990	1990					0.1019244017921892
ALGFLVPPK	9	Unmodified	_ALGFLVPPK_					0	0	0		NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	NRSN1|p.V82L|1|0.08|ENSG00000152954|chr6:24145602-24145602|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.294571	940.574589	0.43821	0.00020652	-3.9907	-0.0018808	-3.5525	-0.0016743	471.29219490983394	63.475	0.35964	63.223	63.048	63.408	-0.25141	0.18102	-0.00011139	NaN	44.531	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166730			1632	18890	1097	1097							0.1019244017921892
ALGFLVWSAL	10	Unmodified	_ALGFLVWSAL_					0	0	0			REV__KCNJ14|p.L102V|1|0.13|ENSG00000182324|chr19:48462028-48462028|C/G|missense_variant	REV__KCNJ14|p.L102V|1|0.13|ENSG00000182324|chr19:48462028-48462028|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.27880859375	2	538.810585	1075.60662	-0.26949	-0.0001452	0.42625	0.00022967	0.15676	8.4463E-05	538.8105902492867	84.78	0.34042	84.642	84.406	84.747	-0.13789					15	7	3	0	0	0	0.03519	1	10252	10252		45.952	0	1	133350	+		1633	36172	1098	1098	1991	1991					0.07183807862361391
ALGGGGAT	8	Unmodified	_ALGGGGAT_					0	0	0		ENST00000496583.1_1_19:54694282-54694453:+|nuORF	ENST00000496583.1_1_19:54694282-54694453:+|nuORF	ENST00000496583.1_1_19:54694282-54694453:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	602.7723999023438	1	603.309666	602.30239	-0.50159	-0.00030261	0.28002	0.00016894	-0.22157	-0.00013368	603.313184123998	64.387	0.54935	64.189	63.956	64.505	-0.1975					22	13	2	0	0	0	0.027866	1	7327	7327		1.4648	0	1	98387			1634	15570	1099	1099	1992	1992					-0.014669488420963717
ALGGMVPILS	10	Unmodified	_ALGGMVPILS_					0	0	0			REV__ENSG00000189339|ENST00000617444|SLC35E2B	REV__ENSG00000189339|ENST00000617444|SLC35E2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7923583984375	2	479.275521	956.536489	-0.1289	-6.178E-05	-2.7571	-0.0013214	-2.886	-0.0013832	479.27399321364794	63.794	0.42186	63.602	63.418	63.84	-0.19243					12	10	2	0	0	0	0.03519	1	7265	7265		10.866	0	1	66499	+		1635	28114	1100	1100	1993	1993					0.05648186202256511
ALGGWQGPLPA	11	Unmodified	_ALGGWQGPLPA_					0	0	0		ENST00000372648.9_1_9:131570248-131570605:+|nuORF	ENST00000372648.9_1_9:131570248-131570605:+|nuORF	ENST00000372648.9_1_9:131570248-131570605:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7738037109375	2	533.787641	1065.56073	-0.089275	-4.7654E-05	-2.6507	-0.0014149	-2.74	-0.0014626	534.287579846749	47.84	0.11566	47.653	47.596	47.712	-0.18684					4	2	2	0	0	0	0.024734	1	4701	4701		23.042	0	1	502940			1636	13048	1101	1101	1994	1994					0.03057162680147485
ALGHNATAI	9	Unmodified	_ALGHNATAI_					0	0	0		ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.23785400390625	2	434.237784	866.461016	-0.1493	-6.483E-05	0.25372	0.00011017	0.10442	4.5345E-05	434.2378940617191	34.484	1.7923	34.484	33.739	35.531	0					112	46	4	0	0	0	0.31037	2	2567	2557;2567		74.255	2.3575	1	7608200			1637	3941	1102	1102	1995;1996	1996					0.022443450661853603
ALGHNATAI	9	Unmodified	_ALGHNATAI_					0	0	0		ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.23828125	2	434.237784	866.461016	-0.46118	-0.00020026	0.67293	0.00029221	0.21175	9.1949E-05	434.23807342612656	34.298	1.8944	34.349	33.571	35.465	0.050255					118	48	4	0	0	0	0.35646	1	2473	2473		68.787	5.4806	1	6995600			1638	3941	1102	1102	1997	1997					0.022443450661853603
ALGICCAAFS	10	Unmodified	_ALGICCAAFS_					0	0	0		nc|ENSG00000061492|Q9H1J5|WNT8A;nc|ENSG00000061492|Q9H1J5-2|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7726745605469	2	478.222431	954.430309	0.33439	0.00015991	-0.17888	-8.5547E-05	0.15551	7.4368E-05	478.2222701306655	45.497	1.5407	45.497	44.622	46.163	0					55	44	2	0	0	0	0.03519	1	4328	4328		38.806	0	1	266650			1639	18055	1103	1103	1998	1998					-0.04872892634728032
ALGIFLVH	8	Unmodified	_ALGIFLVH_					0	0	0		sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7801513671875	2	435.265813	868.517074	0.10676	4.6467E-05	0.067595	2.9422E-05	0.17435	7.5889E-05	435.26573333808443	46.922	0.85918	46.653	46.415	47.274	-0.26939					45	23	3	0	0	0	0.027866	1	4543	4543		16.705	0	1	1565100			1640	37937	1104	1104	1999	1999					0.07755597973653039
ALGIGLYKG	9	Unmodified	_ALGIGLYKG_					0	0	0			REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.2583923339844	2	446.268553	890.522553	0.23149	0.00010331	0.17626	7.866E-05	0.40775	0.00018197	446.26857036546164	42.763	0.46396	42.623	42.345	42.809	-0.13929					23	12	3	0	0	0	0.024412	1	3922	3922		24.203	0	1	232580	+		1641	31127	1105	1105	2000	2000					0.07291276765465682
ALGIGLYKG	9	Unmodified	_ALGIGLYKG_					0	0	0			REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	446.268553	890.522553	-0.054075	-2.4132E-05	-1.809	-0.00080732	-1.8631	-0.00083145	446.2673586940983	42.642	0.78979	42.522	42.237	43.027	-0.11995	-0.074962	-0.00077587	NaN	38.806	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293190	+		1642	31127	1105	1105							0.07291276765465682
ALGIGLYKG	9	Unmodified	_ALGIGLYKG_					0	0	0			REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	446.268553	890.522553	-0.35769	-0.00015963	-2.341	-0.0010447	-2.6987	-0.0012043	446.2673909573255	42.793	0.87022	42.555	42.229	43.099	-0.23737	-0.04157	-0.0012506	NaN	38.806	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327380	+		1643	31127	1105	1105							0.07291276765465682
ALGIGLYKG	9	Unmodified	_ALGIGLYKG_					0	0	0			REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	REV__ENST00000370473.4_1_1:89518656-89518746:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	446.268553	890.522553	-0.3942	-0.00017592	-2.3701	-0.0010577	-2.7643	-0.0012336	446.26730603505985	42.833	0.94145	42.607	42.298	43.24	-0.22597	0.010429	-0.0012767	NaN	38.806	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519200	+		1644	31127	1105	1105							0.07291276765465682
ALGIKLPH	8	Unmodified	_ALGIKLPH_					0	0	0		ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.2384033203125	2	424.771263	847.527973	-0.55879	-0.00023736	0.85387	0.0003627	0.29507	0.00012534	424.7716077982141	29.571	0.51212	29.326	29.099	29.611	-0.24523					20	11	2	0	0	0	0.027866	1	1844	1844		19.36	10.538	1	117430			1645	6440	1106	1106	2001	2001					0.09811000347929166
ALGKERGAAEP	11	Unmodified	_ALGKERGAAEP_					0	0	0		ENST00000563588.5_1_16:30768252-30768357:+|nuORF	ENST00000563588.5_1_16:30768252-30768357:+|nuORF	ENST00000563588.5_1_16:30768252-30768357:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.3219604492188	2	549.798737	1097.58292	0.75314	0.00041407	1.9956	0.0010972	2.7487	0.0015112	549.7995058139653	63.17	0.87967	63.224	62.888	63.768	0.054104					41	23	4	0	0	0	0.024804	1	7261	7261		47.96	0	1	428880			1646	16871	1107	1107	2002	2002					0.03803342357878137
ALGKRIPN	8	Unmodified	_ALGKRIPN_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7594909667969	2	434.771794	867.529036	0.31799	0.00013825	-4.1316	-0.0017963	-3.8136	-0.001658	434.7690642158416	86.952	0.37618	86.917	86.607	86.983	-0.035362					9	8	2	0	0	0	0.027866	1	10883	10883		12.959	0	1	33739	+		1647	24594	1108	1108	2003	2003					0.08997214716839608
ALGKRRTK	8	Unmodified	_ALGKRRTK_					0	0	0			REV__ENSG00000135931|ENST00000611582|ARMC9	REV__ENSG00000135931|ENST00000611582|ARMC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.265625	2	465.303793	928.593033	-0.066013	-3.0716E-05	2.5822	0.0012015	2.5162	0.0011708	465.30488111865253	46.64	0.40791	46.379	46.162	46.569	-0.26118					16	10	2	0	0	0	0.027866	1	4459	4459		3.9852	0	1	163660	+		1648	23601	1109	1109	2004	2004					0.1258799487379747
ALGKVERNRLL	11	Unmodified	_ALGKVERNRLL_					0	0	0		ENSG00000142609|ENST00000682832|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENST00000270720.11_1_1:1887019-1905630:-|nuORF;nc|ENSG00000142609|Q9C0B2-2|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	634.89306640625	2	634.893503	1267.77245	0.41338	0.00026245	-1.871	-0.0011879	-1.4576	-0.00092541	634.8925865119255	104.35	1.0618	104.35	103.98	105.04	0					81	29	5	0	0	0	0.99553	1	13372	13372		37.812	3.639	1	1987300			1649	5574	1110	1110	2005	2005					0.14927834371087556
ALGKYFVQ	8	Unmodified	_ALGKYFVQ_					0	0	0			REV__nc|ENSG00000125454|Q9HC21-2|SLC25A19	REV__nc|ENSG00000125454|Q9HC21-2|SLC25A19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2311096191406	2	463.260728	924.506903	-0.78346	-0.00036295	-2.2578	-0.001046	-3.0413	-0.0014089	463.2595563927078	35.386	0.26378	35.386	35.306	35.57	0					10	6	2	0	0	0	0.027866	1	2745	2745		35.201	0	1	251020	+		1650	22819	1111	1111	2006	2006					0.04162990248414644
ALGKYFVQ	8	Unmodified	_ALGKYFVQ_					0	0	0			REV__nc|ENSG00000125454|Q9HC21-2|SLC25A19	REV__nc|ENSG00000125454|Q9HC21-2|SLC25A19	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.260728	924.506903	-0.53687	-0.00024871	-1.0871	-0.0005036	-1.6239	-0.00075231	463.2618015960341	35.742	0.18834	35.537	35.428	35.616	-0.20518	0.075519	0.00092464	NaN	33.516	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61512	+		1651	22819	1111	1111							0.04162990248414644
ALGLAGWAFVC	11	Unmodified	_ALGLAGWAFVC_					0	0	0			REV__ENST00000369842.8_1_X:153609573-153609861:+|nuORF	REV__ENST00000369842.8_1_X:153609573-153609861:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7557373046875	2	554.28642	1106.55829	1.2478	0.00069163	1.195	0.00066239	2.4428	0.001354	554.2870527318019	23.186	0.46202	22.995	22.617	23.079	-0.19117					13	9	2	0	0	0	0.02474	1	820	820		24.203	3.7209	1	39150	+		1652	31104	1112	1112	2007	2007					0.00926990950824802
ALGLAGWAFVC	11	Unmodified	_ALGLAGWAFVC_					0	0	0			REV__ENST00000369842.8_1_X:153609573-153609861:+|nuORF	REV__ENST00000369842.8_1_X:153609573-153609861:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	554.28642	1106.55829	-0.41359	-0.00022925	2.1654	0.0012003	1.7519	0.00097103	554.2868414107722	23.192	0.27415	23.012	22.883	23.157	-0.17989	0.081362	0.00054456	NaN	17.365	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34828	+		1653	31104	1112	1112							0.00926990950824802
ALGLAGWGSVG	11	Unmodified	_ALGLAGWGSVG_					0	0	0			REV__ENST00000532725.1_1_8:145618948-145619233:-|nuORF	REV__ENST00000532725.1_1_8:145618948-145619233:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2830505371094	2	494.266542	986.51853	-0.13983	-6.9113E-05	2.6164	0.0012932	2.4765	0.0012241	494.26817322901945	38.835	1.2037	38.835	38.639	39.843	0					44	33	2	0	0	0	0.024729	1	3455	3455		29.15	0	1	1245500	+		1654	34584	1113	1113	2008	2008					0.024731872717666192
ALGLHLIA	8	Unmodified	_ALGLHLIA_					0	0	0		ENST00000354436.6_2_16:69599915-69660315:+|nuORF;ENST00000426654.6_1_16:69599384-69602431:+|nuORF	ENST00000354436.6_2_16:69599915-69660315:+|nuORF	ENST00000354436.6_2_16:69599915-69660315:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.2452697753906	2	404.257988	806.501424	1.6903	0.0006833	-1.5185	-0.00061388	0.17173	6.9424E-05	404.257236291737	31.688	0.8418	31.757	31.327	32.169	0.068962					31	20	2	0	0	0	0.027866	1	2125	2125		10.185	5.0979	1	126210			1655	12624	1114	1114	2009	2009					0.0904331145661672
ALGLIGSTAF	10	Unmodified	_ALGLIGSTAF_					0	0	0		ENST00000427540.1_1_1:222763273-222763709:+|nuORF	ENST00000427540.1_1_1:222763273-222763709:+|nuORF	ENST00000427540.1_1_1:222763273-222763709:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2599792480469	2	475.271293	948.528032	-0.78912	-0.00037504	3.3484	0.0015914	2.5593	0.0012164	475.2732137445874	43.465	0.58586	43.239	42.793	43.379	-0.22597					20	15	2	0	0	0	0.03519	1	3976	3976		24.203	6.8378	1	81818			1656	14112	1115	1115	2010	2010					0.05170955557275647
ALGLPPPVSVF	11	Unmodified	_ALGLPPPVSVF_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.8223266601562	2	548.823692	1095.63283	-0.25317	-0.00013895	-0.22793	-0.00012509	-0.4811	-0.00026404	548.823461295308	57.122	1.0902	56.897	56.582	57.672	-0.22479					82	28	4	0	0	0	0.61689	1	6216	6216		68.787	5.253	1	5297500			1657	8096	1116	1116	2011	2011					0.0888407703384928
ALGLSETRLL	10	Unmodified	_ALGLSETRLL_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2958984375	2	536.821681	1071.62881	-0.86715	-0.00046551	-1.7959	-0.00096407	-2.663	-0.0014296	536.8212505154905	37.541	0.19029	37.573	37.487	37.677	0.032269					6	4	2	0	0	0	0.03519	1	3025	3025		14.137	0	1	29277	+		1658	20291	1117	1117	2012	2012					0.09585987540140195
ALGMCLPYF	9	Unmodified	_ALGMCLPYF_					0	0	0		ENST00000530639.5_1_11:36484790-36484940:+|nuORF	ENST00000530639.5_1_11:36484790-36484940:+|nuORF	ENST00000530639.5_1_11:36484790-36484940:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7701416015625	2	507.742999	1013.47145	1.6846	0.00085536	-0.15205	-7.7203E-05	1.5326	0.00077816	508.24545060457757	59.258	0.28324	59.071	58.866	59.149	-0.18705					11	7	2	0	0	0	0.024389	1	6714	6714		49.211	12.052	1	168500			1659	16238	1118	1118	2013	2013					-0.03475131595246239
ALGNGTYK	8	Unmodified	_ALGNGTYK_					0	0	0		ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.230224609375	2	412.21906	822.423567	0.058763	2.4223E-05	-1.5623	-0.00064402	-1.5036	-0.00061979	412.22060149703987	27.557	0.6041	27.544	27.427	28.031	-0.012983					22	15	2	0	0	0	0.027866	1	1534	1534		35.618	0	1	88330			1660	2236	1119	1119	2014	2014					0.005252538005606766
ALGNVRTV	8	Unmodified	_ALGNVRTV_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;ENST00000470645.5_1_7:150732911-150733055:+|nuORF	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.2481994628906	2	415.248152	828.481751	-0.23383	-9.7097E-05	0.052651	2.1863E-05	-0.18118	-7.5233E-05	415.24819602679423	35.905	1.3177	35.905	35.57	36.887	0					101	35	5	0	0	0	0.53593	1	2841	2841		82.241	18.934	1	20766000			1661	9964	1120	1120	2015	2015					0.060649354458519156
ALGNVRTV	8	Unmodified	_ALGNVRTV_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;ENST00000470645.5_1_7:150732911-150733055:+|nuORF	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2481994628906	2	415.248152	828.481751	-0.74758	-0.00031043	0.6482	0.00026917	-0.099381	-4.1268E-05	415.2484510520065	35.786	1.2836	35.744	35.366	36.649	-0.042458					86	34	4	0	0	0	0.64735	1	2801	2801		71.877	5.4482	1	19276000			1662	9964	1120	1120	2016	2016					0.060649354458519156
ALGPIREL	8	Unmodified	_ALGPIREL_					0	0	0		BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|3|fusion	BIRC6-SPAST|3|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.765869140625	2	434.766178	867.517802	0.021152	9.1963E-06	0.6375	0.00027716	0.65865	0.00028636	434.76640567985066	54.913	1.1106	54.762	54.375	55.485	-0.15036					81	31	4	0	0	0	0.56592	1	6007	6007		79.451	5.4763	1	7144700			1663	187	1121	1121	2017	2017					0.07874392622716186
ALGPLKLK	8	Unmodified	_ALGPLKLK_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.70361328125	2	420.289288	838.564024	-0.07841	-3.2955E-05	0.36325	0.00015267	0.28484	0.00011972	420.2893358531958	33.776	0.52272	33.551	33.321	33.844	-0.22412					24	12	3	0	0	0	0.027866	1	2449	2449		8.2313	0	1	218710			1664	9882	1122	1122	2018	2018					0.13828457524789428
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.2405090332031	2	414.240327	826.466101	0.49837	0.00020645	-0.17599	-7.2903E-05	0.32238	0.00013354	414.2401501440115	34.121	0.92632	34.121	33.626	34.552	0					54	23	4	0	0	0	0.10174	3	2525	2515;2525;2539		110.12	21.9	1	3566000			1665	2225	1123	1123	2019;2020;2021	2020					0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.240478515625	2	414.240327	826.466101	0.28664	0.00011874	0.96978	0.00040172	1.2564	0.00052046	414.24023643031467	33.994	1.1302	33.99	33.561	34.691	-0.0045624					77	28	5	0	0	0	0.28753	1	2486	2486		77.318	9.9904	1	3599500			1666	2225	1123	1123	2022	2022					0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2404479980469	2	414.240327	826.466101	-0.32561	-0.00013488	0.82557	0.00034199	0.49996	0.0002071	414.24058091333234	33.898	1.4125	33.954	33.577	34.989	0.056568					67	35	4	0	0	0	0.15366	2	2430	2430;2440		98.629	26.379	1	3415000			1667	2225	1123	1123	2023;2024	2023					0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.2403869628906	2	414.240327	826.466101	-0.098351	-4.0741E-05	-0.046299	-1.9179E-05	-0.14465	-5.992E-05	414.24036993364	34.115	1.3413	33.891	33.321	34.662	-0.22412					88	33	5	0	0	0	0.31037	1	2491	2491		74.255	20.904	1	2523900			1668	2225	1123	1123	2025	2025					0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.240234375	2	414.240327	826.466101	-0.3549	-0.00014701	0.15524	6.4305E-05	-0.19967	-8.271E-05	414.2404460075316	34.045	1.2056	33.838	33.24	34.446	-0.20696					92	30	5	0	0	0	0.14024	3	2461	2461;2473;2497		101.6	32.814	1	2618200			1669	2225	1123	1123	2026;2027;2028	2026					0.04592648928814924
ALGPTGRGV	9	Unmodified	_ALGPTGRGV_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.2403564453125	2	414.240327	826.466101	-0.87229	-0.00036134	1.1407	0.00047253	0.26842	0.00011119	414.24066351254584	34.026	1.7	33.85	33.146	34.846	-0.17557					74	42	4	0	0	0	0.32811	2	2466	2466;2479		71.877	7.6702	1	2237200			1670	2225	1123	1123	2029;2030	2029					0.04592648928814924
ALGPVASVAFC	11	Unmodified	_ALGPVASVAFC_					0	0	0		nc|ENSG00000107798|P38571-2|LIPA;ENSG00000107798|ENST00000336233|LIPA	nc|ENSG00000107798|P38571-2|LIPA	nc|ENSG00000107798|P38571-2|LIPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7723999023438	2	517.770603	1033.52665	-0.15615	-8.0848E-05	3.6403	0.0018848	3.4841	0.001804	517.7722134836865	72.371	1.0543	72.094	71.745	72.799	-0.2769					80	24	5	0	0	0	0.61689	1	8476	8476		68.787	10.005	1	1716000			1671	2857	1124	1124	2031	2031					0.011229981968654101
ALGQEPPL	8	Unmodified	_ALGQEPPL_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.7462158203125	2	412.729261	823.443968	0.64684	0.00026697	2.732	0.0011276	3.3788	0.0013945	412.73038543489	84.523	0.16899	84.385	84.237	84.406	-0.13789					5	3	2	0	0	0	0.027866	1	10212	10212		38.806	6.8513	1	55085	+		1672	22746	1125	1125	2032	2032					0.025184244603678962
ALGQLLCIM	9	Carbamidomethyl (C),Oxidation (M)	_ALGQLLC(Carbamidomethyl (C))IM(Oxidation (M))_	ALGQLLC(1)IM	ALGQLLCIM(1)	ALGQLLC(100)IM	ALGQLLCIM(100)	0	1	1			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7725219726562	2	517.772288	1033.53002	-0.15615	-8.0848E-05	0.38513	0.00019941	0.22898	0.00011856	517.7722134836865	72.371	1.0543	72.094	71.745	72.799	-0.2769					80	24	5	0	0	0	0.14199	1	8466	8466		101.21	16.296	1	1716000	+		1673	20774	1126	1126	2033	2033	267	637			0.014599249792354385
ALGQLLCIM	9	Carbamidomethyl (C),Oxidation (M)	_ALGQLLC(Carbamidomethyl (C))IM(Oxidation (M))_	ALGQLLC(1)IM	ALGQLLCIM(1)	ALGQLLC(77)IM	ALGQLLCIM(77)	0	1	1			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7722778320312	2	517.772288	1033.53002	0.4606	0.00023849	-0.40745	-0.00021097	0.053148	2.7518E-05	517.7718680935776	72.367	1.1774	72.103	71.758	72.936	-0.26479					78	27	5	0	0	0	0.29104	1	8485	8485		76.847	18.065	1	2174400	+		1674	20774	1126	1126	2034	2034	267	637			0.014599249792354385
ALGQLLCIM	9	Carbamidomethyl (C),Oxidation (M)	_ALGQLLC(Carbamidomethyl (C))IM(Oxidation (M))_	ALGQLLC(1)IM	ALGQLLCIM(1)	ALGQLLC(83)IM	ALGQLLCIM(83)	0	1	1			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7722778320312	2	517.772288	1033.53002	-0.28773	-0.00014898	0.32949	0.0001706	0.041759	2.1622E-05	517.7721900389345	72.217	1.4046	72.019	71.748	73.152	-0.1981					82	33	4	0	0	0	0.24299	2	8470	8447;8470		83.287	17.484	1	2102000	+		1675	20774	1126	1126	2035;2036	2036	267	637			0.014599249792354385
ALGQPPLW	8	Unmodified	_ALGQPPLW_					0	0	0			REV__ENST00000421422.1_2_20:39812284-39812746:-|nuORF	REV__ENST00000421422.1_2_20:39812284-39812746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.2276306152344	2	441.247621	880.480688	-0.6519	-0.00028765	-3.9885	-0.0017599	-4.6404	-0.0020476	441.24569275544616	34.971	1.116	34.949	34.593	35.709	-0.021767					68	28	3	0	0	0	0.027866	1	2624	2624		57.453	23.28	1	937220	+		1676	32179	1127	1127	2037	2037					0.03566721076947488
ALGQTEPL	8	Unmodified	_ALGQTEPL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.76123046875	2	414.726718	827.438883	0.79648	0.00033032	1.2583	0.00052187	2.0548	0.00085219	414.7245563663244	87.771	0.35034	87.735	87.532	87.882	-0.035362					13	8	3	0	0	0	0.027866	1	11038	11038		35.201	0	1	107950			1677	3557	1128	1128	2038	2038					0.018261205977637474
ALGQTRLL	8	Unmodified	_ALGQTRLL_					0	0	0			REV__ENSG00000182902|ENST00000327451|SLC25A18	REV__ENSG00000182902|ENST00000327451|SLC25A18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2476501464844	2	436.271627	870.528701	-0.051379	-2.2415E-05	-3.9545	-0.0017253	-4.0059	-0.0017477	436.26977380418515	35.191	0.26087	35.235	35.12	35.381	0.044056					10	6	2	0	0	0	0.027866	1	2620	2620		62.978	0	1	46935	+		1678	27519	1129	1129	2039	2039					0.0882579499698295
ALGRLAVPT	9	Unmodified	_ALGRLAVPT_					0	0	0			REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2899475097656	2	449.279452	896.544351	-0.62174	-0.00027934	0.37388	0.00016798	-0.24787	-0.00011136	449.2795023064302	53.395	0.435	53.248	52.948	53.383	-0.14724					21	11	2	0	0	0	0.024436	1	5699	5699		23.042	3.6825	1	317210	+		1679	36768	1130	1130	2040	2040					0.09194081514021946
ALGRLAVPT	9	Unmodified	_ALGRLAVPT_					0	0	0			REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.279452	896.544351	0.013271	5.9625E-06	-0.02625	-1.1793E-05	-0.012978	-5.8309E-06	449.2793218874326	53.25	0.46298	53.25	53.011	53.474	0	0.00085373	-0.00018196	NaN	23.042	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352910	+		1680	36768	1130	1130							0.09194081514021946
ALGRNVIPE	9	Unmodified	_ALGRNVIPE_					0	0	0			REV__ENST00000533386.1_1_11:65744508-65745532:+|nuORF	REV__ENST00000533386.1_1_11:65744508-65745532:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.31256103515625	2	484.779816	967.545079	-1.2045	-0.00058393	0.60314	0.00029239	-0.60139	-0.00029154	484.78023952521477	44.678	0.99105	44.529	44.222	45.214	-0.1488					42	28	3	0	0	0	0.024262	1	4227	4227		57.811	6.4758	1	1903600	+		1681	26951	1131	1131	2041	2041					0.06000876163079738
ALGRVQIAP	9	Unmodified	_ALGRVQIAP_					0	0	0			REV__ENSG00000185269|ENST00000409678|NOTUM	REV__ENSG00000185269|ENST00000409678|NOTUM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7508239746094	2	462.784902	923.55525	0.33555	0.00015529	-0.50261	-0.0002326	-0.16706	-7.7311E-05	462.7846412673417	49.483	0.48122	49.483	49.287	49.768	0					30	12	3	0	0	0	0.024535	1	5159	5159		18.324	6.8134	1	981800	+		1682	27748	1132	1132	2042	2042					0.0904148388832482
ALGSAPHPLI	10	Unmodified	_ALGSAPHPLI_					0	0	0		ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2699279785156	2	488.284734	974.554916	0.61698	0.00030126	-0.63965	-0.00031233	-0.022669	-1.1069E-05	488.28429265242784	59.452	0.36256	59.27	59.072	59.435	-0.18134					13	8	2	0	0	0	0.03519	1	6548	6548		25.45	8.7452	1	108360			1683	13263	1133	1133	2043	2043					0.06662064168460802
ALGSLILMI	9	Oxidation (M)	_ALGSLILM(Oxidation (M))I_		ALGSLILM(1)I		ALGSLILM(150)I	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7856750488281	2	473.785721	945.55689	0.59502	0.00028191	-0.52295	-0.00024777	0.072074	3.4147E-05	473.7853886230998	93.051	1.5791	93.051	92.665	94.244	0					92	37	4	0	0	0	0.016588	2	11799	11799;11810		153.88	19.766	1	3366600			1684	5354	1134	1134	2044;2045	2044		220			0.08193356862057044
ALGSLILMI	9	Oxidation (M)	_ALGSLILM(Oxidation (M))I_		ALGSLILM(1)I		ALGSLILM(170)I	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.7859191894531	2	473.785721	945.55689	0.092388	4.3772E-05	-0.054913	-2.6017E-05	0.037475	1.7755E-05	473.78559688836185	92.969	1.9826	92.965	92.163	94.146	-0.0041962					102	47	4	0	0	0	0.013308	4	11782	11749;11758;11782;11795		170.31	36.845	1	3562600			1685	5354	1134	1134	2046;2047;2048;2049	2048		220			0.08193356862057044
ALGSLILMI	9	Oxidation (M)	_ALGSLILM(Oxidation (M))I_		ALGSLILM(1)I		ALGSLILM(150)I	0	0	1		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.78570556640625	2	473.785721	945.55689	0.22494	0.00010657	-0.20009	-9.4798E-05	0.024856	1.1776E-05	473.78551857219463	93.032	2.1013	93.04	92.225	94.327	0.0077209					105	50	4	0	0	0	0.016588	4	11716	11716;11728;11740;11753		153.88	47.47	1	4054900			1686	5354	1134	1134	2050;2051;2052;2053	2050		220			0.08193356862057044
ALGSMRPV	8	Unmodified	_ALGSMRPV_					0	0	0			REV__ENST00000474863.5_1_1:222885078-222885144:-|nuORF	REV__ENST00000474863.5_1_1:222885078-222885144:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2484130859375	2	415.73128	829.448008	-0.78947	-0.00032821	-1.1767	-0.00048919	-1.9662	-0.00081739	415.7303015139177	36.014	1.0616	35.972	35.287	36.349	-0.042454					57	28	3	0	0	0	0.027866	1	2788	2788		57.811	27.97	1	257950	+		1687	33279	1135	1135	2054	2054					0.026461906824465586
ALGSMRPV	8	Unmodified	_ALGSMRPV_					0	0	0			REV__ENST00000474863.5_1_1:222885078-222885144:-|nuORF	REV__ENST00000474863.5_1_1:222885078-222885144:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	415.73128	829.448008	-0.65414	-0.00027194	-6.0167	-0.0025013	-6.6708	-0.0027733	415.72982389179197	36.065	0.64999	35.859	35.752	36.402	-0.20518	-0.1892	-0.002877	NaN	57.811	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151590	+		1688	33279	1135	1135							0.026461906824465586
ALGSMRPV	8	Unmodified	_ALGSMRPV_					0	0	0			REV__ENST00000474863.5_1_1:222885078-222885144:-|nuORF	REV__ENST00000474863.5_1_1:222885078-222885144:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	415.73128	829.448008	0.11638	4.8381E-05	-2.0199	-0.00083971	-1.9035	-0.00079133	415.72959202334255	36.302	0.67113	36.085	35.779	36.45	-0.21661	0.036924	0.00044626	NaN	57.811	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201390	+		1689	33279	1135	1135							0.026461906824465586
ALGSPALLPPL	11	Unmodified	_ALGSPALLPPL_					0	0	0		ENST00000545184.1_1_11:63997228-63997459:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	ENST00000545184.1_1_11:63997228-63997459:+|nuORF	ENST00000545184.1_1_11:63997228-63997459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.28515625	2	524.823692	1047.63283	-0.3585	-0.00018815	1.3637	0.00071572	1.0052	0.00052757	525.3261888409362	66.678	0.42748	66.433	66.05	66.477	-0.24517					19	11	2	0	0	0	0.024738	1	7591	7591		34.173	15.848	1	1730800			1690	6118	1136	1136	2055	2055					0.11092077033845271
ALGSSWIISV	10	Unmodified	_ALGSSWIISV_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7908325195312	2	516.78985	1031.56515	0.0021673	1.12E-06	0.0156	8.0617E-06	0.017767	9.1818E-06	516.7896428000654	88.998	0.79825	88.998	88.683	89.481	0					44	18	3	0	0	0	0.52982	1	11231	11231		84.916	15.288	1	860800			1691	7936	1137	1137	2056	2056					0.05062627103052364
ALGSTECLLL	10	Unmodified	_ALGSTECLLL_					0	0	0		OR2B2|p.A116D|1|0.26|ENSG00000168131|chr6:27911973-27911973|G/T|missense_variant;ENSG00000168131|ENST00000303324|OR2B2	OR2B2|p.A116D|1|0.26|ENSG00000168131|chr6:27911973-27911973|G/T|missense_variant	OR2B2|p.A116D|1|0.26|ENSG00000168131|chr6:27911973-27911973|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7867736816406	2	510.275718	1018.53688	0.4387	0.00022386	-4.0419	-0.0020625	-3.6032	-0.0018386	510.27336736287873	59.958	0.87102	59.958	59.711	60.582	0					27	23	2	0	0	0	0.03519	1	6905	6905		35.618	0	1	105080			1692	7786	1138	1138	2057	2057					0.028355611314509588
ALGTATILLV	10	Unmodified	_ALGTATILLV_					0	0	0		ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2997741699219	2	486.310418	970.606283	-0.38636	-0.00018789	-0.10581	-5.1457E-05	-0.49218	-0.00023935	486.3104386736403	68.557	0.52936	68.557	68.369	68.898	0					28	13	3	0	0	0	0.03519	1	8236	8236		35.618	0	1	247950			1693	32	1139	1139	2058	2058					0.11980388142524134
ALGTATILLV	10	Unmodified	_ALGTATILLV_					0	0	0		ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2998352050781	2	486.310418	970.606283	0.15397	7.4876E-05	-0.36006	-0.0001751	-0.20609	-0.00010022	486.31026707713715	68.908	0.7611	68.615	68.405	69.166	-0.29267					27	19	2	0	0	0	0.03519	1	8267	8267		37.159	21.517	1	235660			1694	32	1139	1139	2059	2059					0.11980388142524134
ALGTGWEEL	9	Unmodified	_ALGTGWEEL_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2843322753906	2	488.242732	974.470912	0.53613	0.00026176	-1.4399	-0.00070301	-0.90374	-0.00044124	488.24162513563203	55.247	0.26957	55.247	55.083	55.353	0					10	7	2	0	0	0	0.021616	1	6091	6091		73.975	0	1	168100			1695	8423	1140	1140	2060	2060					-0.01734511719087095
ALGTLISDD	9	Unmodified	_ALGTLISDD_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.7630920410156	2	452.73474	903.454927	0.57421	0.00025996	0.50054	0.00022661	1.0748	0.00048658	452.7348073144709	77.736	0.58278	77.525	77.247	77.83	-0.21087					23	13	2	0	0	0	0.024412	1	9553	9553		31.955	24.762	1	212660			1696	5083	1141	1141	2061	2061					-0.0006621795599812685
ALGTTSIQTP	10	Unmodified	_ALGTTSIQTP_					0	0	0		sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7692565917969	2	494.769114	987.523675	0.027394	1.3553E-05	0.78524	0.00038851	0.81263	0.00040207	494.7694112820002	47.535	0.70347	47.348	47.084	47.787	-0.18684					32	18	2	0	0	0	0.941	1	4657	4657		51.335	1.7994	1	2747500			1697	37946	1142	1142	2062	2062					0.029414463436978622
ALGTTSLLSI	10	Unmodified	_ALGTTSLLSI_					0	0	0		ENST00000507248.1_1_4:109477874-109478219:-|nuORF	ENST00000507248.1_1_4:109477874-109478219:-|nuORF	ENST00000507248.1_1_4:109477874-109478219:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.28277587890625	2	488.289682	974.564812	-0.1201	-5.8645E-05	3.3301	0.001626	3.21	0.0015674	488.2914484403995	55.815	0.59135	55.659	55.26	55.852	-0.15601					23	15	2	0	0	0	0.03519	1	6117	6117		66.429	0	1	853970			1698	15758	1143	1143	2063	2063					0.0765120738318501
ALGVAISVGF	10	Unmodified	_ALGVAISVGF_					0	0	0			REV__nc|ENSG00000140538|Q16288-2|NTRK3	REV__nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.26324462890625	2	467.273835	932.533118	0.73679	0.00034428	2.0855	0.00097448	2.8223	0.0013188	467.2751112684812	50.379	0.16541	50.46	50.377	50.543	0.08099					6	4	2	0	0	0	0.03519	1	5195	5195		24.203	6.8378	1	443370	+		1699	24027	1144	1144	2064	2064					0.06415259419907215
ALGVAISVGF	10	Unmodified	_ALGVAISVGF_					0	0	0			REV__nc|ENSG00000140538|Q16288-2|NTRK3	REV__nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	467.273835	932.533118	0.16467	7.6948E-05	3.9639	0.0018522	4.1285	0.0019292	467.27604264628866	50.348	0.30642	50.068	49.914	50.221	-0.27977	-0.19591	0.00070139	NaN	17.365	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57903	+		1700	24027	1144	1144							0.06415259419907215
ALGVALGLGAL	11	Unmodified	_ALGVALGLGAL_					0	0	0			REV__ENST00000466409.1_1_9:95874378-95875386:+|nuORF	REV__ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7852783203125	2	477.80276	953.590967	0.39504	0.00018875	0.26438	0.00012632	0.65942	0.00031507	477.80276939846095	91.067	0.65752	90.928	90.744	91.402	-0.13942					27	15	3	0	0	0	0.02474	1	11205	11205		17.365	0	1	427470	+		1701	25861	1145	1145	2065	2065					0.11231521345325746
ALGVGLFLLL	10	Unmodified	_ALGVGLFLLL_					0	0	0		ENST00000533277.5_1_11:66613305-66613563:+|nuORF;ENSG00000173653|ENST00000309657|RCE1	ENST00000533277.5_1_11:66613305-66613563:+|nuORF	ENST00000533277.5_1_11:66613305-66613563:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7823486328125	2	508.331153	1014.64775	-0.57963	-0.00029464	-3.4812	-0.0017696	-4.0608	-0.0020642	508.32915872512666	42.247	0.68835	42.015	41.769	42.457	-0.23186					36	18	3	0	0	0	0.03519	1	3756	3756		35.201	9.7505	1	562800			1702	8395	1146	1146	2066	2066					0.141015689018559
ALGVQYNEN	9	Unmodified	_ALGVQYNEN_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.259521484375	2	504.243264	1006.47197	-0.61165	-0.00030842	-2.7081	-0.0013655	-3.3197	-0.0016739	504.2414642067489	22.777	0.23063	22.592	22.507	22.738	-0.18539					7	4	3	0	0	0	0.024292	1	831	831		58.782	9.3404	1	27884	+		1703	20008	1147	1147	2067	2067					-0.031002973501927045
ALGYVSLFPL	10	Unmodified	_ALGYVSLFPL_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.3344116210938	2	540.310418	1078.60628	-0.7635	-0.00041253	1.6892	0.0009127	0.92572	0.00050018	540.3111592768212	79.268	1.2115	79.268	78.951	80.163	0					62	28	3	0	0	0	0.03519	1	9854	9854		30.504	0	1	1391600			1704	3426	1148	1148	2068	2068					0.07012388142516102
ALHAVYSPPH	10	Unmodified	_ALHAVYSPPH_					0	0	0			REV__SERPINE1|p.P201Sfs*23|1|0.11|ENSG00000106366|chr7:101131968-101131971|CTCC/-|frameshift_variant	REV__SERPINE1|p.P201Sfs*23|1|0.11|ENSG00000106366|chr7:101131968-101131971|CTCC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.311767578125	2	546.285266	1090.55598	-1.7942	-0.00098013	1.8252	0.00099706	0.030993	1.6931E-05	546.2862185018614	21.98	1.0586	22.052	21.684	22.743	0.071487					34	21	3	0	0	0	0.03519	1	722	722		16.473	0	1	90494	+		1705	21615	1149	1149	2069	2069					0.014322785373678926
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-1	1	512.7863159179688	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.877	1	70.877	70.377	71.377	0								0	0	0	0.11709	1	8573	8573		88.643	11.796	1				1706	3116	1150	1150	2070	2070					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-1	1	512.7869262695312	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.937	1	70.937	70.437	71.437	0								0	0	0	0.027618	1	8582	8582		119.56	53.754	1				1707	3116	1150	1150	2071	2071					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-1	1	512.7875366210938	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.015	1	71.015	70.515	71.515	0								0	0	0	0.027618	1	8594	8594		119.56	42.71	1				1708	3116	1150	1150	2072	2072					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-1	1	512.7868041992188	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.094	1	71.094	70.594	71.594	0								0	0	0	0.055901	1	8606	8606		106.42	32.44	1				1709	3116	1150	1150	2073	2073					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-1	1	512.7871704101562	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.173	1	71.173	70.673	71.673	0								0	0	0	0.077235	1	8618	8618		97.473	0	1				1710	3116	1150	1150	2074	2074					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-1	1	512.7869873046875	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.25	1	71.25	70.75	71.75	0								0	0	0	0.055901	1	8630	8630		106.42	32.44	1				1711	3116	1150	1150	2075	2075					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.78662109375	2	512.787307	1023.56006	0.68684	0.0003522	-1.2401	-0.00063591	-0.55327	-0.00028371	512.7867245104212	71.421	2.5325	71.132	70.459	72.992	-0.28858					132	63	5	0	0	0	0.13494	5	8599	8599;8611;8623;8636;8650		102.77	18.471	1	32469000			1712	3116	1150	1150	2076;2077;2078;2079;2080	2076					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-3	3	512.7864990234375	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.002	1	71.013	70.513	71.513	0.010735								0	0	0	0.055901	1	8512	8512		106.42	17.772	1				1713	3116	1150	1150	2081	2081					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-3	3	512.787353515625	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.066	1	71.076	70.576	71.576	0.010735								0	0	0	0.092882	1	8522	8522		94.006	8.6469	1				1714	3116	1150	1150	2082	2082					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-3	3	512.7871704101562	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.141	1	71.151	70.651	71.651	0.010735								0	0	0	0.055901	1	8534	8534		106.42	29.569	1				1715	3116	1150	1150	2083	2083					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MSMS	OPSCC_39_ClassI_Rep-3	3	512.78759765625	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.297	1	71.308	70.808	71.808	0.010735								0	0	0	0.13191	1	8558	8558		85.359	3.0545	1				1716	3116	1150	1150	2084	2084					0.04922323240418791
ALHDILTEI	9	Unmodified	_ALHDILTEI_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	512.787307	1023.56006	0.12625	6.4738E-05	-0.45504	-0.00023334	-0.3288	-0.0001686	512.7869369561231	71.396	1.045	71.121	70.743	71.788	-0.27509	0.034634	0.00035798	NaN	102.77	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4723800			1717	3116	1150	1150							0.04922323240418791
ALHHKQRSL	9	Unmodified	_ALHHKQRSL_					0	0	0		ENST00000417709.5_1_22:46663914-46665043:+|nuORF;ENST00000381031.7_1_22:46663914-46668248:+|nuORF	ENST00000417709.5_1_22:46663914-46665043:+|nuORF	ENST00000417709.5_1_22:46663914-46665043:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.31689453125	2	545.317432	1088.62031	-0.23183	-0.00012642	-1.2024	-0.00065567	-1.4342	-0.00078209	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.5973	1	11386	11386		52.937	4.9772	1	11601000			1718	13327	1151	1151	2085	2085					0.07954478414194455
ALHIVYGDG	9	Unmodified	_ALHIVYGDG_					0	0	0			REV__nc|ENSG00000133321|Q9UL19-2|PLAAT4	REV__nc|ENSG00000133321|Q9UL19-2|PLAAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.30084228515625	2	472.745442	943.476331	-0.4236	-0.00020025	0.80634	0.0003812	0.38274	0.00018094	472.7455216541171	38.237	0.32585	38.057	37.844	38.17	-0.17929					15	9	2	0	0	0	0.024386	1	3134	3134		25.45	0	1	133560	+		1719	23368	1152	1152	2086	2086					0.00233211863383076
ALHIYQGNI	9	Unmodified	_ALHIYQGNI_					0	0	0		ENST00000565125.5_1_11:68660869-68668061:-|nuORF	ENST00000565125.5_1_11:68660869-68668061:-|nuORF	ENST00000565125.5_1_11:68660869-68668061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2994384765625	2	514.779816	1027.54508	-0.59927	-0.00030849	3.0477	0.0015689	2.4484	0.0012604	514.7812429838988	52.844	0.60523	52.844	52.554	53.16	0					22	15	2	0	0	0	0.024294	1	5642	5642		65.803	19.851	1	145930			1720	16913	1153	1153	2087	2087					0.03240876163090434
ALHIYQGNI	9	Unmodified	_ALHIYQGNI_					0	0	0		ENST00000565125.5_1_11:68660869-68668061:-|nuORF	ENST00000565125.5_1_11:68660869-68668061:-|nuORF	ENST00000565125.5_1_11:68660869-68668061:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.779816	1027.54508	0.32422	0.0001669	9.8919	0.0050921	10.216	0.005259	515.2872857493987	52.803	0.16048	52.544	52.443	52.603	-0.25838	-0.19485	0.0018266	NaN	76.847	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88815			1721	16913	1153	1153							0.03240876163090434
ALHKLQKLFEL	11	Unmodified	_ALHKLQKLFEL_					0	0	0			REV__ENSG00000169418|ENST00000368680|NPR1	REV__ENSG00000169418|ENST00000368680|NPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.27459716796875	3	447.274729	1338.80236	0.28749	0.00012859	-4.2236	-0.0018891	-3.9361	-0.0017605	447.27275580646767	106.14	0.71733	106.14	105.89	106.6	-0.0013123					70	22	4	0	0	0	1.0499	1	13578	13578		25.126	0.89417	1	1980000	+		1722	26366	1154	1154	2088	2088					0.14650773316384402
ALHKSRLQH	9	Unmodified	_ALHKSRLQH_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.318359375	2	545.317432	1088.62031	-0.86422	-0.00047127	2.5015	0.0013641	1.6372	0.00089282	545.3187628812475	81.713	0.89104	81.582	81.298	82.189	-0.13075					62	21	4	0	0	0	0.39228	1	10162	10162		66.429	0.96389	1	2537000	+		1723	21125	1155	1155	2089	2089					0.07954478414194455
ALHKSRLQH	9	Unmodified	_ALHKSRLQH_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3182373046875	2	545.317432	1088.62031	-1.3059	-0.0007121	2.9104	0.0015871	1.6046	0.00087501	545.3189057426254	81.554	0.98108	81.578	81.248	82.229	0.023903					64	23	4	0	0	0	0.33245	1	10070	10070		71.296	11.177	1	2509900	+		1724	21125	1155	1155	2090	2090					0.07954478414194455
ALHLGVPP	8	Unmodified	_ALHLGVPP_					0	0	0		ENST00000372336.3_1_10:81145469-81145733:-|nuORF	ENST00000372336.3_1_10:81145469-81145733:-|nuORF	ENST00000372336.3_1_10:81145469-81145733:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2247314453125	2	402.242338	802.470124	0.9284	0.00037344	-0.44985	-0.00018095	0.47856	0.0001925	402.24200227163703	27.148	0.65202	27.148	26.783	27.435	0					25	16	2	0	0	0	0.027866	1	1500	1500		10.185	0	1	73915			1725	13035	1156	1156	2091	2091					0.0609873842252
ALHLLATSPL	10	Unmodified	_ALHLLATSPL_					0	0	0			REV__ENST00000334512.9_1_10:81073174-81073993:+|nuORF	REV__ENST00000334512.9_1_10:81073174-81073993:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2974243164062	2	518.313492	1034.61243	-0.17855	-9.2543E-05	3.7537	0.0019456	3.5752	0.0018531	518.3162534060982	102.6	0.52829	102.61	102.33	102.85	0.0073471					21	12	3	0	0	0	0.03519	1	13094	13094		73.975	7.5455	1	736650	+		1726	30518	1157	1157	2092	2092					0.09650906374031365
ALHLLIHL	8	Unmodified	_ALHLLIHL_					0	0	0			REV__ENST00000433355.6_1_6:146231577-146267398:-|nuORF	REV__ENST00000433355.6_1_6:146231577-146267398:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.286865234375	2	465.300188	928.585822	-1.3319	-0.00061974	3.8823	0.0018065	2.5504	0.0011867	465.30231433326924	75.329	0.50996	75.329	75.076	75.586	0					27	13	3	0	0	0	0.027866	1	9214	9214		33.493	0	1	728220	+		1727	32400	1158	1158	2093	2093					0.11867262273358392
ALHLNSNR	8	Unmodified	_ALHLNSNR_					0	0	0		ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7563781738281	2	462.754133	923.493713	0.5585	0.00025845	3.5479	0.0016418	4.1064	0.0019003	462.75574290148563	40.466	1.5802	40.354	39.792	41.372	-0.11222					124	43	5	0	0	0	0.81662	1	3559	3559		57.811	2.3071	1	25791000			1728	7407	1159	1159	2094	2094					0.028905521890465025
ALHPAPSL	8	Unmodified	_ALHPAPSL_					0	0	0			REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5547790527344	2	403.231971	804.449388	0.37683	0.00015195	3.4983	0.0014106	3.8751	0.0015626	403.2332107188764	22.366	0.32868	22.181	21.952	22.281	-0.18539					9	6	2	0	0	0	0.027866	1	781	781		29.842	9.3597	1	40790	+		1729	29203	1160	1160	2095	2095					0.03934148042844754
ALHPGPTRAL	10	Unmodified	_ALHPGPTRAL_					0	0	0			REV__ENST00000338315.4_1_2:24248444-24248828:+|nuORF	REV__ENST00000338315.4_1_2:24248444-24248828:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.80078125	2	516.801083	1031.58761	-0.31247	-0.00016149	-0.1556	-8.0414E-05	-0.46807	-0.0002419	516.8008438825279	36.688	1.0478	36.624	36.294	37.342	-0.063385					70	27	4	0	0	0	1.089	1	2914	2914		34.173	0	1	2853300	+		1730	30582	1161	1161	2096	2096					0.07308271291321944
ALHVKAARAR	10	Unmodified	_ALHVKAARAR_					0	0	0		ENSG00000167397|ENST00000394975|VKORC1;nc|ENSG00000167397|Q9BQB6-3|VKORC1;nc|ENSG00000167397|Q9BQB6-2|VKORC1	ENSG00000167397|ENST00000394975|VKORC1	ENSG00000167397|ENST00000394975|VKORC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.8092651367188	2	546.841074	1091.66759	-0.90678	-0.00049587	1.3525	0.00073958	0.44568	0.00024372	546.8413716488539	54.332	0.21351	54.332	54.144	54.357	0					9	5	2	0	0	0	0.03519	1	5913	5913		19.997	2.6318	1	176710			1731	7686	1162	1162	2097	2097					0.12542757685150718
ALIARVTNV	9	Unmodified	_ALIARVTNV_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7977294921875	2	478.798009	955.581465	0.56076	0.00026849	-0.43856	-0.00020998	0.1222	5.851E-05	478.7976818035858	49.98	0.67405	49.874	49.635	50.309	-0.10558					35	17	3	0	0	0	0.22902	1	5058	5058		85.161	24.757	1	1388000			1732	2507	1163	1163	2098	2098					0.10189753059808027
ALIARVTNV	9	Unmodified	_ALIARVTNV_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.79779052734375	2	478.798009	955.581465	0.54822	0.00026249	-0.43117	-0.00020644	0.11705	5.6043E-05	478.7976337781717	50.078	0.60064	49.897	49.681	50.282	-0.18071					35	15	3	0	0	0	0.30449	1	5065	5065		75.043	18.322	1	1248500			1733	2507	1163	1163	2099	2099					0.10189753059808027
ALIARVTNV	9	Unmodified	_ALIARVTNV_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.798009	955.581465	0.27887	0.00013352	-1.4555	-0.0006969	-1.1767	-0.00056338	478.797478571242	49.946	0.65055	49.946	49.656	50.307	0	0.012073	-0.0010822	NaN	85.161	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2122800			1734	2507	1163	1163							0.10189753059808027
ALIARVTNV	9	Unmodified	_ALIARVTNV_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.798009	955.581465	0.27371	0.00013105	-1.1622	-0.00055646	-0.88849	-0.00042541	478.79773513905826	50.141	0.58321	49.989	49.671	50.254	-0.1512	0.054997	-0.00080127	NaN	85.161	55	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2073800			1735	2507	1163	1163							0.10189753059808027
ALIARVTNV	9	Unmodified	_ALIARVTNV_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.798009	955.581465	-0.29579	-0.00014163	-0.046209	-2.2125E-05	-0.342	-0.00016375	478.7980355196745	49.855	0.55014	49.929	49.654	50.204	0.074196	-0.0050716	0.0002674	NaN	85.161	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1933600			1736	2507	1163	1163							0.10189753059808027
ALIDHLPEI	9	Unmodified	_ALIDHLPEI_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.29705810546875	2	510.78985	1019.56515	-0.47586	-0.00024306	1.2586	0.00064289	0.78276	0.00039983	510.7904532371649	73.29	0.57285	73.3	73.068	73.64	0.0096588					30	14	3	0	0	0	0.024323	1	8850	8850		63.306	15.391	1	1495200			1737	3756	1164	1164	2100	2100					0.056146271030456774
ALIEDEHNL	9	Unmodified	_ALIEDEHNL_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.2640380859375	2	527.264196	1052.51384	-1.1887	-0.00062675	0.64003	0.00033747	-0.54865	-0.00028928	527.2646238100972	48.314	1.3862	48.314	47.938	49.324	0					76	39	4	0	0	0	0.03201	3	4919	4907;4919;4929		139.97	52.216	1	6098900			1738	8559	1165	1165	2101;2102;2103	2102					-0.01031741661677188
ALIEDEHNL	9	Unmodified	_ALIEDEHNL_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2644653320312	2	527.264196	1052.51384	-0.81329	-0.00042882	0.29379	0.0001549	-0.5195	-0.00027391	527.2644292123528	48.466	0.83182	48.313	47.924	48.756	-0.153					54	23	4	0	0	0	0.013887	4	4907	4907;4917;4929;4943		180.93	79.325	1	5688000			1739	8559	1165	1165	2104;2105;2106;2107	2104					-0.01031741661677188
ALIEDEHNL	9	Unmodified	_ALIEDEHNL_					0	0	0		nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14;nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	nc|ENSG00000175455|Q49A88-2|CCDC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.2645263671875	2	527.264196	1052.51384	-0.28369	-0.00014958	-0.56066	-0.00029562	-0.84435	-0.0004452	527.264036091411	48.152	1.4087	48.219	47.936	49.345	0.066795					69	38	3	0	0	0	0.03849	2	4825	4825;4837		134.81	27.74	1	5130200			1740	8559	1165	1165	2108;2109	2108					-0.01031741661677188
ALIEELLQA	9	Unmodified	_ALIEELLQA_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.2876892089844	2	500.289682	998.564812	-0.031023	-1.5521E-05	-0.33281	-0.0001665	-0.36383	-0.00018202	500.2894551784303	89.453	0.9516	89.453	89.102	90.054	0					47	22	3	0	0	0	0.091713	2	11297	11284;11297		113.41	28.496	1	1018700			1741	4316	1166	1166	2110;2111	2111					0.06547207383198383
ALIEELLQA	9	Unmodified	_ALIEELLQA_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.2884216308594	2	500.289682	998.564812	0.34516	0.00017268	-0.4345	-0.00021737	-0.089334	-4.4693E-05	500.28929533412116	89.425	0.71712	89.403	89.157	89.874	-0.021645					29	16	2	0	0	0	0.1158	1	11254	11254		107.01	27.556	1	909590			1742	4316	1166	1166	2112	2112					0.06547207383198383
ALIEELLQA	9	Unmodified	_ALIEELLQA_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.289682	998.564812	-0.67576	-0.00033808	0.99705	0.00049882	0.32129	0.00016074	500.2896424789735	89.457	0.72406	89.294	89.092	89.816	-0.1626	-0.094131	0.0012764	NaN	113.41	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204230			1743	4316	1166	1166							0.06547207383198383
ALIEELLQA	9	Unmodified	_ALIEELLQA_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.289682	998.564812	-0.33545	-0.00016782	1.6099	0.00080544	1.2745	0.00063762	500.2899681409405	89.441	0.58933	89.313	88.997	89.586	-0.12775	-0.074602	0.0018896	NaN	113.41	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152070			1744	4316	1166	1166							0.06547207383198383
ALIEELLQA	9	Unmodified	_ALIEELLQA_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.289682	998.564812	-0.14775	-7.3919E-05	0.63266	0.00031651	0.48491	0.00024259	500.28972950759584	89.46	0.4712	89.323	89.148	89.619	-0.13762	-0.065342	0.00091179	NaN	113.41	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200960			1745	4316	1166	1166							0.06547207383198383
ALIEGVGILL	10	Unmodified	_ALIEGVGILL_					0	0	0		ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000466995.5_1_X:48751014-48751375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.3185119628906	2	499.318243	996.621933	-0.10608	-5.2968E-05	-0.051293	-2.5611E-05	-0.15737	-7.858E-05	499.3180515478282	96.682	1.2103	96.682	96.115	97.325	0					61	27	3	0	0	0	0.79525	1	12329	12329		60.972	9.6365	1	848190			1746	4212;14825	1167	1167	2113	2113					0.12348674659574499
ALIEGVGILL	10	Unmodified	_ALIEGVGILL_					0	0	0		ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000466995.5_1_X:48751014-48751375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.3184509277344	2	499.318243	996.621933	0.58825	0.00029373	-0.78582	-0.00039237	-0.19757	-9.8648E-05	499.31772948015424	96.588	1.5732	96.594	96.107	97.68	0.0065079					66	35	3	0	0	0	0.79525	2	12277	12277;12287		60.972	15.02	1	701090			1747	4212;14825	1167	1167	2114;2115	2114					0.12348674659574499
ALIEGVGILL	10	Unmodified	_ALIEGVGILL_					0	0	0		ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000466995.5_1_X:48751014-48751375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.3190002441406	2	499.318243	996.621933	1.1459	0.00057217	-1.2388	-0.00061855	-0.092881	-4.6377E-05	499.317459277067	96.73	1.4793	96.73	96.113	97.592	-3.0518E-05					71	33	3	0	0	0	0.57825	3	12258	12248;12258;12271		79.451	13.022	1	675210			1748	4212;14825	1167	1167	2116;2117;2118	2117					0.12348674659574499
ALIEKLVEL	9	Unmodified	_ALIEKLVEL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.3231201171875	2	514.323525	1026.6325	0.9356	0.0004812	-1.0392	-0.00053451	-0.10364	-5.3307E-05	514.3228656875909	73.906	1.0593	73.906	73.698	74.757	0					44	24	2	0	0	0	0.025498	4	9046	9025;9034;9046;9061		145.16	26.413	1	4544400			1749	922	1168	1168	2119;2120;2121;2122	2121					0.12024657313986609
ALIEKLVEL	9	Unmodified	_ALIEKLVEL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.3232421875	2	514.323525	1026.6325	0.14434	7.4235E-05	-0.23974	-0.00012331	-0.095409	-4.9071E-05	514.3232839364495	74.211	1.2819	73.952	73.701	74.983	-0.25887					49	30	2	0	0	0	0.062622	4	9039	9030;9039;9052;9073		124.08	24.714	1	5055200			1750	922	1168	1168	2123;2124;2125;2126	2124					0.12024657313986609
ALIEKLVEL	9	Unmodified	_ALIEKLVEL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.3236083984375	2	514.323525	1026.6325	-0.89288	-0.00045923	-1.367	-0.00070306	-2.2599	-0.0011623	514.3237813459729	73.948	1.1777	73.957	73.677	74.854	0.0096512					59	27	3	0	0	0	0.015032	4	8964	8953;8964;8976;8991		190.26	29.493	1	5014700			1751	922	1168	1168	2127;2128;2129;2130	2128					0.12024657313986609
ALIEKLVEL	9	Unmodified	_ALIEKLVEL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.323525	1026.6325	0.15593	8.0199E-05	-0.33713	-0.00017339	-0.1812	-9.3193E-05	514.32334357308	73.853	0.64963	73.663	73.436	74.086	-0.19026	-0.20695	0.00025929	NaN	190.26	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600970			1752	922	1168	1168							0.12024657313986609
ALIEKPTVD	9	Unmodified	_ALIEKPTVD_					0	0	0		ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2865295410156	2	493.281857	984.549162	-0.40093	-0.00019777	-0.26467	-0.00013056	-0.6656	-0.00032833	493.28153463542975	75.772	0.88032	75.527	74.918	75.799	-0.24455					43	23	3	0	0	0	0.024381	1	9312	9312		37.159	6.6555	1	1077900			1753	9799	1169	1169	2131	2131					0.05626920866143337
ALIEKPTVD	9	Unmodified	_ALIEKPTVD_					0	0	0		ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.281857	984.549162	0.23973	0.00011825	-1.019	-0.00050266	-0.77929	-0.00038441	493.28122199629183	75.535	0.61884	75.545	75.132	75.751	0.010368	0.048233	-0.00087468	NaN	60.972	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1168700			1754	9799	1169	1169							0.05626920866143337
ALIEKPTVD	9	Unmodified	_ALIEKPTVD_					0	0	0		ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.281857	984.549162	-0.74835	-0.00036915	0.56066	0.00027656	-0.18769	-9.2583E-05	493.28193418756285	75.79	0.67197	75.518	75.103	75.775	-0.27266	0.020625	0.00068377	NaN	60.972	44	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	878840			1755	9799	1169	1169							0.05626920866143337
ALIEKPTVD	9	Unmodified	_ALIEKPTVD_					0	0	0		ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.281857	984.549162	-0.15416	-7.6042E-05	-0.028489	-1.4053E-05	-0.18264	-9.0095E-05	493.281648060002	75.72	0.84142	75.461	74.906	75.747	-0.25866	-0.035729	0.00010254	NaN	60.972	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857230			1756	9799	1169	1169							0.05626920866143337
ALIEKPTVD	9	Unmodified	_ALIEKPTVD_					0	0	0		ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	ENSG00000189233|ENST00000413272|NUGGC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.281857	984.549162	0.21367	0.0001054	-0.54118	-0.00026695	-0.32751	-0.00016156	493.2814006385171	75.622	0.92218	75.446	74.774	75.696	-0.17548	-0.050981	-0.00040326	NaN	60.972	43	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	867400			1757	9799	1169	1169							0.05626920866143337
ALIEQKVEL	9	Unmodified	_ALIEQKVEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8123779296875	2	521.810782	1041.60701	-0.3837	-0.00020022	-0.092027	-4.8021E-05	-0.47573	-0.00024824	521.8106037086043	56.963	0.85786	56.798	56.497	57.355	-0.16431					60	23	4	0	0	0	0.094442	1	6340	6340		112.41	24.714	1	3909100			1758	9685	1170	1170	2132	2132					0.0878718279154782
ALIEQKVEL	9	Unmodified	_ALIEQKVEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2901611328125	2	521.810782	1041.60701	-0.42624	-0.00022242	0.26927	0.00014051	-0.15697	-8.1908E-05	521.8106456836665	56.635	1.0333	56.733	56.435	57.468	0.097893					61	28	4	0	0	0	0.024017	1	6257	6257		65.465	4.4934	1	3665000			1759	9685	1170	1170	2133	2133					0.0878718279154782
ALIEQKVEL	9	Unmodified	_ALIEQKVEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.810782	1041.60701	-0.51241	-0.00026738	0.38892	0.00020294	-0.12349	-6.444E-05	521.8109165125994	56.849	0.37646	56.682	56.52	56.896	-0.1672	-0.070732	0.00030466	NaN	75.043	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237280			1760	9685	1170	1170							0.0878718279154782
ALIEQKVEL	9	Unmodified	_ALIEQKVEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.810782	1041.60701	0.48421	0.00025266	-0.66207	-0.00034548	-0.17787	-9.2813E-05	521.8103182103001	56.968	0.47274	56.766	56.557	57.03	-0.20209	0.013714	-0.00079218	NaN	75.043	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363340			1761	9685	1170	1170							0.0878718279154782
ALIEQKVEL	9	Unmodified	_ALIEQKVEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.810782	1041.60701	0.24625	0.0001285	-0.23092	-0.0001205	0.015331	8E-06	521.810562742996	56.967	0.48811	56.742	56.582	57.07	-0.22479	-0.010166	-0.00034222	NaN	75.043	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325260			1762	9685	1170	1170							0.0878718279154782
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENSG00000176393|ENST00000295640|RNPEP;ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENSG00000176393|ENST00000295640|RNPEP	ENSG00000176393|ENST00000295640|RNPEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.7976684570312	2	566.797872	1131.58119	-1.0854	-0.00061518	1.1403	0.00064634	0.054979	3.1162E-05	566.7984722626551	83.244	0.85725	83.244	82.922	83.779	0					31	19	2	0	0	0	0.20553	1	10404	10404		98.629	10.933	1	759890			1763	8635	1171	1171	2134	2134					0.02066288549303863
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENSG00000176393|ENST00000295640|RNPEP;ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENSG00000176393|ENST00000295640|RNPEP	ENSG00000176393|ENST00000295640|RNPEP	MSMS	OPSCC_39_ClassI_Rep-3	3	566.7977905273438	2	566.797872	1131.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.161	1	83.188	82.688	83.688	0.026558								0	0	0	0.70548	1	10316	10316		77.318	22.541	1				1764	8635	1171	1171	2135	2135					0.02066288549303863
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENSG00000176393|ENST00000295640|RNPEP;ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENSG00000176393|ENST00000295640|RNPEP	ENSG00000176393|ENST00000295640|RNPEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.7982177734375	2	566.797872	1131.58119	0.64446	0.00036528	-0.74692	-0.00042335	-0.10246	-5.8075E-05	566.7973382246797	83.308	0.68651	83.096	82.79	83.476	-0.21158					42	15	4	0	0	0	0.72712	1	10037	10037		62.107	7.3851	1	481070			1765	8635	1171	1171	2136	2136					0.02066288549303863
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENSG00000176393|ENST00000295640|RNPEP;ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENSG00000176393|ENST00000295640|RNPEP	ENSG00000176393|ENST00000295640|RNPEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.7978515625	2	566.797872	1131.58119	-0.077812	-4.4104E-05	-0.073225	-4.1504E-05	-0.15104	-8.5607E-05	566.7977008038436	83.296	0.80614	83.157	82.781	83.588	-0.1386					42	18	4	0	0	0	0.75995	1	10036	10036		60.118	12.159	1	510370			1766	8635	1171	1171	2137	2137					0.02066288549303863
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENSG00000176393|ENST00000295640|RNPEP;ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENSG00000176393|ENST00000295640|RNPEP	ENSG00000176393|ENST00000295640|RNPEP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.797872	1131.58119	0.30802	0.00017459	-0.36491	-0.00020683	-0.056886	-3.2243E-05	566.7976250992918	83.303	0.72364	83.212	82.872	83.596	-0.090454	0.046275	-0.00041275	NaN	98.629	49	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	721720			1767	8635	1171	1171							0.02066288549303863
ALIEVPDGFTA	11	Unmodified	_ALIEVPDGFTA_					0	0	0		ENSG00000176393|ENST00000295640|RNPEP;ENST00000478617.5_1_1:201952590-201969135:+|nuORF	ENSG00000176393|ENST00000295640|RNPEP	ENSG00000176393|ENST00000295640|RNPEP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	566.797872	1131.58119	0.50823	0.00028807	-0.53999	-0.00030606	-0.031752	-1.7997E-05	566.7974033023714	83.289	0.88387	83.12	82.734	83.618	-0.16915	-0.045912	-0.00061122	NaN	98.629	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506800			1768	8635	1171	1171							0.02066288549303863
ALIGAIHIL	9	Unmodified	_ALIGAIHIL_					0	0	0			REV__nc|ENSG00000146350|Q96NH3-4|TBC1D32	REV__nc|ENSG00000146350|Q96NH3-4|TBC1D32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.22198486328125	2	460.80002	919.585488	-0.48072	-0.00022151	0.52651	0.00024262	0.045795	2.1102E-05	460.8001064645084	41.998	1.5599	41.766	41.469	43.029	-0.23186					79	41	3	0	0	0	0.024541	1	3873	3873		29.842	15.177	1	1464600	+		1769	24478	1172	1172	2138	2138					0.12247842553506416
ALIISEHAR	9	Unmodified	_ALIISEHAR_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.82440185546875	2	505.293091	1008.57163	-0.74581	-0.00037685	-0.48733	-0.00024624	-1.2331	-0.0006231	505.2931023179133	43.194	1.0855	43.194	42.715	43.8	0					56	29	3	0	0	0	0.024412	1	4001	4001		17.365	0	1	1069100			1770	2832	1173	1173	2139	2139					0.06768565054414921
ALIIWMVVV	9	Unmodified	_ALIIWMVVV_					0	0	0			REV__nc|ENSG00000115353|P25103-3|TACR1	REV__nc|ENSG00000115353|P25103-3|TACR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2958984375	2	522.319731	1042.62491	-0.37371	-0.0001952	-0.18464	-9.644E-05	-0.55835	-0.00029164	522.3195758402005	33.802	0.60563	33.858	33.654	34.26	0.056568					29	14	3	0	0	0	0.024389	1	2390	2390		39.021	3.8208	1	192510	+		1771	22194	1174	1174	2140	2140					0.1053022651271931
ALIIWMVVV	9	Unmodified	_ALIIWMVVV_					0	0	0			REV__nc|ENSG00000115353|P25103-3|TACR1	REV__nc|ENSG00000115353|P25103-3|TACR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.319731	1042.62491	-0.47647	-0.00024887	-0.149	-7.7828E-05	-0.62548	-0.0003267	522.3195752938464	33.762	0.38726	33.757	33.561	33.948	-0.0045624	-0.085546	-6.6541E-05	NaN	29.842	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156430	+		1772	22194	1174	1174							0.1053022651271931
ALILETIML	9	Unmodified	_ALILETIML_					0	0	0			REV__ENST00000465725.1_1_7:108212170-108215134:+|nuORF	REV__ENST00000465725.1_1_7:108212170-108215134:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2526550292969	2	508.806654	1015.59875	-0.57023	-0.00029014	3.8595	0.0019637	3.2893	0.0016736	509.3100387175883	36.468	0.68414	36.468	36.162	36.846	0					38	18	3	0	0	0	0.024487	1	2941	2941		31.955	9.995	1	146400	+		1773	22995	1175	1175	2141	2141					0.09157912550585934
ALILHLLKL	9	Unmodified	_ALILHLLKL_					0	0	0			REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2566528320312	2	517.360245	1032.70594	0.38964	0.00020159	-0.83842	-0.00043377	-0.44878	-0.00023218	517.3597121279713	82.119	0.56524	82.009	81.686	82.252	-0.11006					23	13	2	0	0	0	0.024487	1	10186	10186		40.573	7.057	1	205400	+		1774	31633	1176	1176	2142	2142					0.1908925054710835
ALILHLLKL	9	Unmodified	_ALILHLLKL_					0	0	0			REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.360245	1032.70594	-0.6547	-0.00033871	0.61456	0.00031795	-0.040141	-2.0767E-05	517.3603167395755	81.966	0.56776	81.966	81.711	82.279	0	-0.019611	0.00038841	NaN	40.573	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214340	+		1775	31633	1176	1176							0.1908925054710835
ALILHLLKL	9	Unmodified	_ALILHLLKL_					0	0	0			REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	REV__ENST00000393110.6_1_2:120021396-120021600:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.360245	1032.70594	-0.86117	-0.00044554	0.55038	0.00028475	-0.31079	-0.00016079	517.3604323548276	81.956	1.5597	81.981	81.739	83.299	0.025711	-0.003815	0.00032201	NaN	40.573	47	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189900	+		1776	31633	1176	1176							0.1908925054710835
ALILTAGYM	9	Unmodified	_ALILTAGYM_					0	0	0			REV__nc|ENSG00000167107|Q96CM8-4|ACSF2	REV__nc|ENSG00000167107|Q96CM8-4|ACSF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7801513671875	2	476.762246	951.50994	-0.37543	-0.00017899	-0.24958	-0.00011899	-0.62501	-0.00029798	476.76416726534353	33.989	0.40922	34.039	33.844	34.253	0.050251					12	9	2	0	0	0	0.024487	1	2419	2419		24.203	9.5387	1	54320	+		1777	26106	1177	1177	2143	2143					0.03224497310930019
ALILTAGYM	9	Unmodified	_ALILTAGYM_					0	0	0			REV__nc|ENSG00000167107|Q96CM8-4|ACSF2	REV__nc|ENSG00000167107|Q96CM8-4|ACSF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.762246	951.50994	-0.83549	-0.00039833	9.606	0.0045798	8.7705	0.0041814	476.768064423193	34.266	0.15662	34.09	34.011	34.168	-0.17557	-0.015964	0.00080146	NaN	11.511	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32278	+		1778	26106	1177	1177							0.03224497310930019
ALIQDNPKL	9	Unmodified	_ALIQDNPKL_					0	0	0			REV__nc|ENSG00000156110|P55263-2|ADK	REV__nc|ENSG00000156110|P55263-2|ADK	MSMS	OPSCC_39_ClassI_Rep-3	3	506.2959289550781	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.989	1	97.987	97.487	98.487	-0.0020752								0	0	0	0.6703	1	12433	12433		26.693	1.1189	1		+		1779	25051	1178	1178	2144	2144					0.07118029477317123
ALIQQATTV	9	Unmodified	_ALIQQATTV_					0	0	0		ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF;ENST00000561773.1_1_15:66671752-66672088:-|nuORF;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENSG00000163682|ENST00000295955|RPL9	ENST00000475906.1_1_14:35732014-35732239:+|nuORF	ENST00000475906.1_1_14:35732014-35732239:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7738037109375	2	472.7742	943.533846	1.0913	0.00051595	-0.77647	-0.00036709	0.31485	0.00014885	472.77367685747765	55.769	0.60617	55.769	55.464	56.07	0					40	16	4	0	0	0	0.34489	1	6172	6172		69.628	14.851	1	3082400			1780	7130	1179	1179	2145	2145					0.05982054068931575
ALIQQATTV	9	Unmodified	_ALIQQATTV_					0	0	0		ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF;ENST00000561773.1_1_15:66671752-66672088:-|nuORF;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENSG00000163682|ENST00000295955|RPL9	ENST00000475906.1_1_14:35732014-35732239:+|nuORF	ENST00000475906.1_1_14:35732014-35732239:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.773681640625	2	472.7742	943.533846	-0.48191	-0.00022783	0.92293	0.00043634	0.44102	0.0002085	472.7744499917529	55.564	0.62804	55.662	55.371	55.999	0.098015					38	16	3	0	0	0	0.6238	1	6071	6071		51.193	8.3284	1	2836100			1781	7130	1179	1179	2146	2146					0.05982054068931575
ALIQQATTV	9	Unmodified	_ALIQQATTV_					0	0	0		ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF;ENST00000561773.1_1_15:66671752-66672088:-|nuORF;ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENSG00000163682|ENST00000295955|RPL9	ENST00000475906.1_1_14:35732014-35732239:+|nuORF	ENST00000475906.1_1_14:35732014-35732239:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.7742	943.533846	0.11229	5.309E-05	0.53286	0.00025192	0.64516	0.00030501	472.77438007262725	55.894	0.43441	55.678	55.447	55.881	-0.21607	-0.026129	0.00033286	NaN	69.628	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413410			1782	7130	1179	1179							0.05982054068931575
ALIRLLPRAQD	11	Unmodified	_ALIRLLPRAQD_					0	0	0		ENST00000522126.5_1_5:141021104-141024617:-|nuORF;nc|ENSG00000197948|Q86WN1-2|FCHSD1;ENSG00000197948|ENST00000435817|FCHSD1	ENST00000522126.5_1_5:141021104-141024617:-|nuORF	ENST00000522126.5_1_5:141021104-141024617:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.5926818847656	3	422.594461	1264.76155	-0.0027145	-1.1471E-06	-4.1298	-0.0017452	-4.1325	-0.0017464	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	1.0621	1	5144	5144		21.78	0.74819	1	16177000			1783	10070	1180	1180	2147	2147					0.13976431996798055
ALIRLSPSY	9	Unmodified	_ALIRLSPSY_					0	0	0			REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27398681640625	2	510.297842	1018.58113	0.35737	0.00018237	-3.3587	-0.0017139	-3.0013	-0.0015316	510.2964100338662	77.082	0.5097	76.814	76.338	76.848	-0.26806					18	11	2	0	0	0	0.023454	1	9148	9148		71.877	3.0906	1	97679	+		1784	20498	1181	1181	2148	2148					0.07258333339950696
ALIRVMPI	8	Unmodified	_ALIRVMPI_					0	0	0			REV__nc|ENSG00000161649|Q6UXG3-3|CD300LG	REV__nc|ENSG00000161649|Q6UXG3-3|CD300LG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.75628662109375	2	456.788598	911.562644	-0.0060538	-2.7653E-06	3.7256	0.0017018	3.7195	0.001699	456.7902765856784	31.23	0.36318	31.299	31.082	31.445	0.06896					11	8	2	0	0	0	0.027866	1	1992	1992		14.664	0	1	68416	+		1785	25394	1182	1182	2149	2149					0.10332500164395242
ALISGIEAQL	10	Unmodified	_ALISGIEAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7950439453125	2	507.795132	1013.57571	0.093232	4.7343E-05	-0.25602	-0.00013001	-0.16279	-8.2663E-05	507.794890224916	78.903	0.80081	78.672	78.389	79.19	-0.23141					39	18	3	0	0	0	0.50517	1	9431	9431		87.696	7.9839	1	960860		+	1786	514	1183	1183	2150	2150					0.06946609757460465
ALISGIEAQL	10	Unmodified	_ALISGIEAQL_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7948913574219	2	507.795132	1013.57571	-0.03614	-1.8352E-05	-0.7049	-0.00035795	-0.74104	-0.0003763	507.7948777747699	78.842	0.72107	78.686	78.383	79.104	-0.15591					50	16	4	0	0	0	0.44975	1	9404	9404		93.598	12.073	1	912440		+	1787	514	1183	1183	2151	2151					0.06946609757460465
ALISLPLNR	9	Unmodified	_ALISLPLNR_					0	0	0			REV__ENST00000598190.1_1_19:53158712-53193715:-|nuORF	REV__ENST00000598190.1_1_19:53158712-53193715:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80389404296875	2	498.813659	995.612765	0.29185	0.00014558	-1.0275	-0.00051253	-0.73564	-0.00036695	498.8129068186433	53.74	0.57189	53.74	53.404	53.976	0					28	15	3	0	0	0	0.024487	1	5780	5780		24.203	7.7296	1	211490	+		1788	35816	1184	1184	2152	2152					0.114783260938907
ALISLPLNR	9	Unmodified	_ALISLPLNR_					0	0	0			REV__ENST00000598190.1_1_19:53158712-53193715:-|nuORF	REV__ENST00000598190.1_1_19:53158712-53193715:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.813659	995.612765	-0.48104	-0.00023995	-0.23551	-0.00011748	-0.71655	-0.00035743	498.81344665166836	53.798	0.43497	53.65	53.42	53.855	-0.14723	-0.044821	0.00049141	NaN	24.203	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379680	+		1789	35816	1184	1184							0.114783260938907
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF	nc|ENSG00000178573|O75444|MAF	nc|ENSG00000178573|O75444|MAF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7691650390625	2	491.769448	981.524344	0.41287	0.00020304	-1.0094	-0.0004964	-0.59654	-0.00029336	491.76902202535933	42.204	0.90195	42.204	41.921	42.823	0					73	25	4	0	0	0	0.014918	4	3860	3850;3860;3873;3887		162.25	43.509	1	9684000			1790	8820	1185	1185	2153;2154;2155;2156	2154					0.03284285783422547
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF	nc|ENSG00000178573|O75444|MAF	nc|ENSG00000178573|O75444|MAF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7692565917969	2	491.769448	981.524344	-0.12943	-6.3649E-05	-0.20572	-0.00010116	-0.33515	-0.00016481	491.7693769597821	42.365	1.0102	42.233	41.953	42.963	-0.1322					70	28	4	0	0	0	0.015901	2	3883	3862;3883		157.33	36.708	1	9290900			1791	8820	1185	1185	2157;2158	2158					0.03284285783422547
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF	nc|ENSG00000178573|O75444|MAF	nc|ENSG00000178573|O75444|MAF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7696533203125	2	491.769448	981.524344	-0.25539	-0.00012559	-0.077918	-3.8318E-05	-0.33331	-0.00016391	491.7694858329403	42.325	1.021	42.351	42.056	43.077	0.026012					77	28	5	0	0	0	0.03666	2	3821	3821;3839		136.27	40.078	1	9781000			1792	8820	1185	1185	2159;2160	2159					0.03284285783422547
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF	nc|ENSG00000178573|O75444|MAF	nc|ENSG00000178573|O75444|MAF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.7693786621094	2	491.769448	981.524344	-0.53611	-0.00026364	-0.068595	-3.3733E-05	-0.6047	-0.00029737	491.76943890445557	42.327	1.064	42.204	41.853	42.917	-0.12299					86	27	5	0	0	0	0.03666	2	3808	3808;3821		136.27	29.261	1	12545000			1793	8820	1185	1185	2161;2162	2161					0.03284285783422547
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF	nc|ENSG00000178573|O75444|MAF	nc|ENSG00000178573|O75444|MAF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.7693176269531	2	491.769448	981.524344	-0.29754	-0.00014632	-0.30058	-0.00014782	-0.59812	-0.00029414	491.76933706384375	42.498	1.1258	42.266	41.904	43.029	-0.23186					87	29	5	0	0	0	0.020687	2	3813	3813;3825		148.99	36.576	1	12843000			1794	8820	1185	1185	2163;2164	2163					0.03284285783422547
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF	nc|ENSG00000178573|O75444|MAF	nc|ENSG00000178573|O75444|MAF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7695617675781	2	491.769448	981.524344	-0.19867	-9.7698E-05	-0.51694	-0.00025422	-0.71561	-0.00035191	491.7692246153905	42.517	1.0922	42.287	41.965	43.057	-0.23029					81	28	5	0	0	0	0.020687	2	3802	3802;3819		148.99	36.576	1	12975000			1795	8820	1185	1185	2165;2166	2165					0.03284285783422547
ALITDIIQL	9	Unmodified	_ALITDIIQL_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.3072509765625	2	500.307875	998.601197	0.60592	0.00030315	-0.64819	-0.00032429	-0.042268	-2.1147E-05	500.3072877715326	96.549	0.69321	96.413	96.142	96.835	-0.1367					33	15	3	0	0	0	0.26966	1	11943	11943		79.713	7.8351	1	460540			1796	18203	1186	1186	2167	2167					0.10184084279910621
ALITDIIQL	9	Unmodified	_ALITDIIQL_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.30712890625	2	500.307875	998.601197	0.79997	0.00040023	-0.81465	-0.00040758	-0.01468	-7.3445E-06	500.30717041449503	96.584	0.91109	96.461	96.108	97.019	-0.12305					38	20	3	0	0	0	0.14024	2	11958	11945;11958		101.6	30.305	1	523100			1797	18203	1186	1186	2168;2169	2169					0.10184084279910621
ALITGLTFAI	10	Unmodified	_ALITGLTFAI_					0	0	0		ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.30914306640625	2	510.310418	1018.60628	-0.18397	-9.3883E-05	-0.45001	-0.00022964	-0.63398	-0.00032353	510.31019131871864	77.111	2.0348	77.125	76.737	78.771	0.013496					153	48	5	0	0	0	0.57825	1	9530	9530		79.451	8.1553	1	66216000			1798	9120	1187	1187	2170	2170					0.09772388142516775
ALITIDVHA	9	Unmodified	_ALITIDVHA_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7768859863281	2	476.776742	951.538931	0.043968	2.0963E-05	-0.71845	-0.00034254	-0.67449	-0.00032158	476.7762571595673	68.946	0.73756	68.716	68.439	69.177	-0.23047					38	17	3	0	0	0	0.29104	1	7970	7970		76.847	5.4687	1	1832500			1799	3446	1188	1188	2171	2171					0.06122357931565148
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.31060791015625	2	495.310752	988.606951	0.31658	0.00015681	-0.36829	-0.00018242	-0.051705	-2.561E-05	495.3104105885906	74.893	0.9305	74.893	74.551	75.481	0					61	23	4	0	0	0	0.10174	2	9180	9180;9194		110.12	18.292	1	1931000			1800	3505	1189	1189	2172;2173	2172					0.11219227582228086
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.3104248046875	2	495.310752	988.606951	-0.093818	-4.6469E-05	-0.025478	-1.2619E-05	-0.1193	-5.9088E-05	495.3105598082978	75.146	0.95576	74.902	74.591	75.547	-0.24455					62	24	4	0	0	0	0.2101	2	9199	9181;9199		87.696	30.975	1	2048300			1801	3505	1189	1189	2174;2175	2175					0.11219227582228086
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.3104553222656	2	495.310752	988.606951	-0.040062	-1.9843E-05	-0.10651	-5.2753E-05	-0.14657	-7.2596E-05	495.31056255857044	74.983	0.9246	74.993	74.649	75.574	0.010376					68	23	4	0	0	0	0.19099	2	9111	9111;9129		90.37	30.975	1	1895800			1802	3505	1189	1189	2176;2177	2176					0.11219227582228086
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.310752	988.606951	-0.088445	-4.3808E-05	-0.19447	-9.6324E-05	-0.28292	-0.00014013	495.31055000077123	75.091	1.1751	74.815	74.089	75.264	-0.27573	-0.026844	-3.2871E-05	NaN	110.12	61	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	862080			1803	3505	1189	1189							0.11219227582228086
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.310752	988.606951	-0.069191	-3.4271E-05	0.11322	5.6079E-05	0.044029	2.1808E-05	495.3107005124821	75.05	0.62272	74.787	74.531	75.153	-0.26326	-0.054914	0.00027193	NaN	110.12	39	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	960050			1804	3505	1189	1189							0.11219227582228086
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.310752	988.606951	0.3353	0.00016608	-0.54988	-0.00027236	-0.21458	-0.00010629	495.310306272651	74.845	0.7952	74.663	74.351	75.146	-0.18279	-0.17946	-0.00038495	NaN	110.12	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665270			1805	3505	1189	1189							0.11219227582228086
ALIVAIMVPL	10	Unmodified	_ALIVAIMVPL_					0	0	0			REV__nc|ENSG00000114859|P51788-4|CLCN2	REV__nc|ENSG00000114859|P51788-4|CLCN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8186645507812	2	520.332839	1038.65112	0.42906	0.00022326	3.6737	0.0019115	4.1028	0.0021348	520.3344268065813	71.622	0.23073	71.334	71.234	71.464	-0.28858					6	5	2	0	0	0	0.03519	1	8647	8647		35.201	0	1	194600	+		1806	22151	1190	1190	2178	2178					0.13334495684193826
ALIVISSY	8	Unmodified	_ALIVISSY_					0	0	0		ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000152208|O43424-2|GRID2	ENSG00000152208|ENST00000282020|GRID2	ENSG00000152208|ENST00000282020|GRID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.257568359375	2	433.255111	864.49567	0.082102	3.5571E-05	-1.5381	-0.00066638	-1.456	-0.00063081	433.25533421616046	102.79	2.2075	102.8	102.41	104.62	0.0054245					176	55	6	0	0	0	0.82104	1	13209	13209		57.453	10.686	1	219000000			1807	6253	1191	1191	2179	2179					0.05800168154280527
ALIVITLSVF	10	Unmodified	_ALIVITLSVF_					0	0	0		nc|ENSG00000164035|Q9ULC0-3|EMCN;ENSG00000164035|ENST00000296420|EMCN	nc|ENSG00000164035|Q9ULC0-3|EMCN	nc|ENSG00000164035|Q9ULC0-3|EMCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.327392578125	2	538.341718	1074.66888	-0.47449	-0.00025544	2.1693	0.0011678	1.6948	0.00091239	538.3426806136555	99.669	0.1671	99.68	99.617	99.785	0.010231					6	3	2	0	0	0	0.03519	1	12705	12705		30.504	6.3009	1	80835			1808	7191	1192	1192	2180	2180					0.13453534210702855
ALIVLVDVTV	10	Unmodified	_ALIVLVDVTV_					0	0	0			REV__ENST00000485767.1_1_9:124076097-124079531:+|nuORF	REV__ENST00000485767.1_1_9:124076097-124079531:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.30615234375	2	521.33135	1040.64815	0.34987	0.0001824	3.1651	0.0016501	3.515	0.0018325	521.3327455357388	47.247	0.18551	47.094	46.94	47.125	-0.153					5	4	2	0	0	0	0.03519	1	4687	4687		21.96	7.2958	1	540390	+		1809	33568	1193	1193	2181	2181					0.12944943831030287
ALIVLVDVTV	10	Unmodified	_ALIVLVDVTV_					0	0	0			REV__ENST00000485767.1_1_9:124076097-124079531:+|nuORF	REV__ENST00000485767.1_1_9:124076097-124079531:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.7662963867188	2	521.33135	1040.64815	-0.77325	-0.00040312	-2.5549	-0.001332	-3.3282	-0.0017351	521.328196338501	47.068	0.57163	47.128	46.918	47.489	0.059097					28	15	3	0	0	0	0.03519	1	4690	4690		53.351	3.9099	1	430430	+		1810	33568	1193	1193	2182	2182					0.12944943831030287
ALIVRNRLETP	11	Unmodified	_ALIVRNRLETP_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.9256591796875	3	427.9261	1280.75647	0.56194	0.00024047	-1.4642	-0.00062656	-0.90223	-0.00038609	427.9254095988729	101.43	0.65128	101.42	101.15	101.8	-0.0054474					44	14	4	0	0	0	1.0748	1	12913	12913		11.932	0	1	712660			1811	1119	1194	1194	2183	2183					0.1273212813414375
ALIVVPAWVS	10	Unmodified	_ALIVVPAWVS_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.239013671875	2	527.81841	1053.62227	0.63701	0.00033622	-0.087451	-4.6158E-05	0.54956	0.00029007	527.8178780652099	67.814	0.70473	67.559	67.323	68.028	-0.25516					30	16	3	0	0	0	0.03519	1	7827	7827		55.504	16.698	1	499410			1812	6985	1195	1195	2184	2184					0.09760094379407747
ALIVVPAWVS	10	Unmodified	_ALIVVPAWVS_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2384033203125	2	527.81841	1053.62227	-0.17829	-9.4105E-05	0.45143	0.00023827	0.27314	0.00014417	527.8181943978317	67.767	0.57391	67.533	67.303	67.877	-0.23376					27	13	3	0	0	0	0.03519	1	7816	7816		76.847	5.5509	1	475300			1813	6985	1195	1195	2185	2185					0.09760094379407747
ALIYITGEIT	10	Unmodified	_ALIYITGEIT_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-2|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3072509765625	2	547.310615	1092.60668	-0.24511	-0.00013415	1.9027	0.0010414	1.6576	0.00090721	547.3118784343995	63.172	0.41619	62.914	62.706	63.122	-0.25824					19	9	3	0	0	0	0.03519	1	7105	7105		21.96	3.6355	1	202230			1814	3446	1196	1196	2186	2186					0.0640776307170654
ALKAIFDQL	9	Unmodified	_ALKAIFDQL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2907409667969	2	509.800217	1017.58588	-0.36982	-0.00018853	2.5937	0.0013223	2.2239	0.0011337	509.80136089433495	57.365	0.34472	57.365	57.187	57.532	0					13	8	2	0	0	0	0.024288	1	6473	6473		52.937	13.684	1	307780			1815	2999	1197	1197	2187	2187					0.07779217482709555
ALKAIFDQL	9	Unmodified	_ALKAIFDQL_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2910461425781	2	509.800217	1017.58588	-0.52493	-0.00026761	3.0358	0.0015476	2.5108	0.00128	509.80151364527154	57.323	0.45188	57.419	57.014	57.465	0.09531					18	11	2	0	0	0	0.024288	1	6367	6367		36.447	0	1	214800			1816	2999	1197	1197	2188	2188					0.07779217482709555
ALKAKKAVL	9	Unmodified	_ALKAKKAVL_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENST00000450202.2_1_1:228637162-228637315:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.32879638671875	2	471.328945	940.643337	0.51597	0.00024319	-0.95807	-0.00045157	-0.44211	-0.00020838	471.32846027238327	22.585	0.83349	22.396	22.147	22.98	-0.18894					46	17	4	0	0	0	0.096521	3	820	812;820;832		111.65	37.132	1	2917200			1817	10111	1198	1198	2189;2190;2191	2190					0.17064104478936315
ALKAKKAVL	9	Unmodified	_ALKAKKAVL_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENST00000450202.2_1_1:228637162-228637315:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.3289489746094	2	471.328945	940.643337	-0.4081	-0.00019235	0.14287	6.7339E-05	-0.26523	-0.00012501	471.32895180253837	22.623	0.87179	22.437	22.189	23.061	-0.18539					51	18	5	0	0	0	0.096521	3	826	804;813;826		111.65	37.132	1	2638600			1818	10111	1198	1198	2192;2193;2194	2194					0.17064104478936315
ALKAKKAVL	9	Unmodified	_ALKAKKAVL_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENST00000450202.2_1_1:228637162-228637315:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.3287658691406	2	471.328945	940.643337	0.42712	0.00020131	-0.98487	-0.0004642	-0.55775	-0.00026289	471.32844601873353	22.694	0.73727	22.492	22.24	22.977	-0.20199					44	15	4	0	0	0	0.18915	3	801	791;801;814		90.777	38.964	1	2658200			1819	10111	1198	1198	2195;2196;2197	2196					0.17064104478936315
ALKDFVASI	9	Unmodified	_ALKDFVASI_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2789611816406	2	482.279118	962.543683	0.27486	0.00013256	-0.10536	-5.0812E-05	0.1695	8.1747E-05	482.2789052491809	67.473	1.2043	67.473	67.165	68.369	0					73	30	4	0	0	0	0.03666	3	8047	8047;8059;8071		136.27	48.514	1	2947400			1820	3172	1199	1199	2198;2199;2200	2198					0.06091242074330694
ALKDFVASI	9	Unmodified	_ALKDFVASI_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2789611816406	2	482.279118	962.543683	0.097673	4.7106E-05	0.018712	9.0243E-06	0.11638	5.613E-05	482.2789721983277	67.861	0.86926	67.572	67.187	68.057	-0.28835					58	21	4	0	0	0	0.015752	2	8070	8070;8081		158.07	67.298	1	3144500			1821	3172	1199	1199	2201;2202	2201					0.06091242074330694
ALKDFVASI	9	Unmodified	_ALKDFVASI_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2790222167969	2	482.279118	962.543683	0.054663	2.6363E-05	0.1258	6.0669E-05	0.18046	8.7032E-05	482.2790300598417	67.591	1.1976	67.615	67.27	68.467	0.023911					68	30	4	0	0	0	0.025498	2	8000	7987;8000		145.16	29.697	1	3484200			1822	3172	1199	1199	2203;2204	2204					0.06091242074330694
ALKDFVASI	9	Unmodified	_ALKDFVASI_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	482.279118	962.543683	1.1561	0.00055756	-1.0089	-0.00048655	0.14725	7.1014E-05	482.2786377767004	67.814	0.50089	67.559	67.279	67.78	-0.25516	-0.0032557	-0.00082603	NaN	158.07	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446670			1823	3172	1199	1199							0.06091242074330694
ALKDFVASI	9	Unmodified	_ALKDFVASI_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	482.279118	962.543683	0.014761	7.1189E-06	0.17377	8.3807E-05	0.18853	9.0926E-05	482.27904033705374	67.835	0.69806	67.601	67.303	68.001	-0.23375	0.038704	0.00031468	NaN	158.07	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353230			1824	3172	1199	1199							0.06091242074330694
ALKDFVASI	9	Unmodified	_ALKDFVASI_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	482.279118	962.543683	0.20146	9.7161E-05	0.017875	8.6207E-06	0.21934	0.00010578	482.279054826541	67.79	0.49332	67.552	67.334	67.827	-0.23814	-0.0098458	0.00016431	NaN	158.07	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368970			1825	3172	1199	1199							0.06091242074330694
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7794494628906	2	493.779482	985.544411	0.10884	5.3742E-05	-0.41334	-0.0002041	-0.3045	-0.00015036	493.7792661854307	57.476	0.71196	57.476	56.968	57.68	0					58	18	5	0	0	0	0.012922	4	6463	6440;6451;6463;6477		223.88	42.952	1	15384000			1826	4632	1200	1200	2205;2206;2207;2208	2207					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.77972412109375	2	493.779482	985.544411	0.35657	0.00017607	-0.7834	-0.00038683	-0.42682	-0.00021076	493.77909835366734	57.628	0.75612	57.453	56.999	57.755	-0.1749					59	19	4	0	0	0	0.01456	3	6477	6451;6463;6477		213.85	37.405	1	12143000			1827	4632	1200	1200	2209;2210;2211	2211					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7787780761719	2	493.779482	985.544411	-0.4086	-0.00020176	0.083566	4.1263E-05	-0.32504	-0.0001605	493.779533349193	57.279	0.70262	57.374	56.945	57.647	0.095306					59	18	5	0	0	0	0.013719	4	6377	6340;6352;6364;6377		195.05	28.368	1	13860000			1828	4632	1200	1200	2212;2213;2214;2215	2215					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7795104980469	2	493.779482	985.544411	-0.97175	-0.00047983	1.2487	0.00061657	0.27692	0.00013674	493.78000861403234	57.592	0.72339	57.414	56.991	57.714	-0.17775					31	18	2	0	0	0	0.013719	2	6306	6294;6306		168.26	15.614	1	2839700			1829	4632	1200	1200	2216;2217	2217					0.051060367233731085
ALKDLINEA	9	Unmodified	_ALKDLINEA_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7789611816406	2	493.779482	985.544411	-0.51719	-0.00025538	0.76163	0.00037608	0.24444	0.0001207	493.7797071551069	57.714	0.67859	57.481	57.061	57.74	-0.23363					29	17	2	0	0	0	0.013719	1	6304	6304		168.26	15.223	1	3214200			1830	4632	1200	1200	2218	2218					0.051060367233731085
ALKEKLMLF	9	Unmodified	_ALKEKLMLF_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.8025512695312	2	546.827921	1091.64129	-0.62464	-0.00034157	3.9443	0.0021569	3.3197	0.0018153	546.8299683399304	30.769	0.66642	30.525	30.246	30.912	-0.24354					35	15	3	0	0	0	0.024294	1	1994	1994		37.159	0	1	292960	+		1831	22745	1201	1201	2219	2219					0.09913307678812089
ALKEPAVIL	9	Unmodified	_ALKEPAVIL_					0	0	0			REV__ENSG00000173581|ENST00000586790|CCDC106	REV__ENSG00000173581|ENST00000586790|CCDC106	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.3054504394531	2	477.305136	952.595718	-0.27091	-0.00012931	1.0418	0.00049726	0.77088	0.00036795	477.305224658588	91.405	0.81181	91.405	91.133	91.945	0					38	18	3	0	0	0	0.6504	1	11579	11579		49.442	5.3247	1	1405100	+		1832	26787	1202	1202	2220	2220					0.11752405488095974
ALKFLASLL	9	Unmodified	_ALKFLASLL_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG;TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant;TG|p.E576Nfs*20|1|0.17|ENSG00000042832|chr8:132887098-132887098|G/-|frameshift_variant	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2836608886719	2	488.315503	974.616454	-0.99894	-0.0004878	-3.6658	-0.0017901	-4.6648	-0.0022779	488.3138640394197	55	0.45153	55.098	54.881	55.332	0.098015					17	12	2	0	0	0	0.022756	1	6012	6012		79.451	18.479	1	286630			1833	1083	1203	1203	2221	2221					0.12812995867761856
ALKGDRGIPS	10	Unmodified	_ALKGDRGIPS_					0	0	0			REV__POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	REV__POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.30780029296875	2	507.290548	1012.56654	-0.4762	-0.00024157	2.4635	0.0012497	1.9873	0.0010082	507.29085144757676	43.712	0.63226	43.607	43.398	44.03	-0.10468					32	16	3	0	0	0	0.03519	1	4012	4012		70.816	28.42	1	456470	+		1834	20122	1204	1204	2222	2222					0.06076261191822141
ALKHELAF	8	Unmodified	_ALKHELAF_					0	0	0		nc|ENSG00000018189|Q7L099|RUFY3;nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3	nc|ENSG00000018189|Q7L099|RUFY3	nc|ENSG00000018189|Q7L099|RUFY3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.76116943359375	2	464.766178	927.517802	-0.80548	-0.00037436	0.17167	7.9788E-05	-0.63381	-0.00029457	464.7659975664888	44.568	0.80362	44.464	44.168	44.972	-0.10468					45	20	3	0	0	0	0.027866	1	4247	4247		20.482	0	1	552120			1835	938	1205	1205	2223	2223					0.051143926227155134
ALKHKTPK	8	Unmodified	_ALKHKTPK_					0	0	0		IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.2746887207031	2	461.795269	921.575986	0.22408	0.00010348	3.1003	0.0014317	3.3244	0.0015352	461.79675908136164	21.007	0.38571	20.83	20.63	21.016	-0.17721					16	7	3	0	0	0	0.027866	1	624	624		33.516	14.156	1	52388			1836	17759	1206	1206	2224	2224					0.11206074267988697
ALKHKTPK	8	Unmodified	_ALKHKTPK_					0	0	0		IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.27490234375	2	461.795269	921.575986	0.32201	0.0001487	3.7374	0.0017259	4.0595	0.0018746	461.79689937318574	21.093	0.44179	20.897	20.681	21.123	-0.19577					18	8	3	0	0	0	0.027866	1	618	618		24.203	11.244	1	69896			1837	17759	1206	1206	2225	2225					0.11206074267988697
ALKHKTPK	8	Unmodified	_ALKHKTPK_					0	0	0		IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	461.795269	921.575986	-1.0602	-0.00048958	5.2137	0.0024077	4.1535	0.0019181	461.797700072005	21.123	0.44424	20.91	20.723	21.167	-0.2128	0.03145	0.00059011	NaN	24.203	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95597			1838	17759	1206	1206							0.11206074267988697
ALKIAKEP	8	Unmodified	_ALKIAKEP_					0	0	0			REV__ENSG00000177542|ENST00000628067|SLC25A22;REV__ENSG00000182902|ENST00000327451|SLC25A18	REV__ENSG00000182902|ENST00000327451|SLC25A18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7922058105469	2	435.276378	868.538203	-0.15005	-6.5313E-05	0.44421	0.00019335	0.29416	0.00012804	435.2764303581688	33.334	0.70767	33.133	32.771	33.479	-0.20019					27	17	2	0	0	0	0.027866	1	2335	2335		27.882	14.107	1	297390	+		1839	27519;27122	1207	1207	2226	2226					0.09867563282523406
ALKILTSLF	9	Unmodified	_ALKILTSLF_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.79290771484375	2	503.320786	1004.62702	-0.25425	-0.00012797	0.067378	3.3913E-05	-0.18688	-9.4059E-05	503.3206690101092	64.325	0.55354	64.097	63.866	64.42	-0.22773					28	13	3	0	0	0	0.024427	1	7293	7293		34.173	0	1	333150	+		1840	23135	1208	1208	2227	2227					0.12488978522185334
ALKILTSLF	9	Unmodified	_ALKILTSLF_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	503.320786	1004.62702	0.90598	0.000456	0.29611	0.00014904	1.2021	0.00060503	503.32107801846615	64.163	0.35617	64.163	63.99	64.347	0	0.016028	7.4626E-05	NaN	31.53	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116940	+		1841	23135	1208	1208							0.12488978522185334
ALKILTSLF	9	Unmodified	_ALKILTSLF_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.320786	1004.62702	-0.52586	-0.00026467	-0.036718	-1.8481E-05	-0.56257	-0.00028315	503.32113221407	64.403	0.43945	64.14	63.901	64.341	-0.2626	-0.0069278	-0.00026041	NaN	31.53	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153590	+		1842	23135	1208	1208							0.12488978522185334
ALKKELLD	8	Unmodified	_ALKKELLD_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.31524658203125	2	465.286943	928.559333	-0.23469	-0.0001092	0.1966	9.1478E-05	-0.038084	-1.772E-05	465.2870831800615	47.844	0.40643	47.746	47.485	47.892	-0.097553					16	10	2	0	0	0	0.027866	1	4691	4691		35.618	0	1	143110	+		1843	26563	1209	1209	2228	2228					0.09219528591370363
ALKKELLD	8	Unmodified	_ALKKELLD_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.286943	928.559333	-0.62041	-0.00028867	0.12502	5.8169E-05	-0.4954	-0.0002305	465.286745141211	47.869	0.68339	47.869	47.56	48.243	0	0.08904	5.8541E-06	NaN	35.618	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413860	+		1844	26563	1209	1209							0.09219528591370363
ALKKELLD	8	Unmodified	_ALKKELLD_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.286943	928.559333	-0.41759	-0.0001943	0.13569	6.3137E-05	-0.2819	-0.00013116	465.2869048587879	47.966	0.7234	47.813	47.606	48.329	-0.15301	0.033092	1.579E-05	NaN	35.618	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388790	+		1845	26563	1209	1209							0.09219528591370363
ALKKELLD	8	Unmodified	_ALKKELLD_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.286943	928.559333	-0.05737	-2.6693E-05	0.10825	5.0367E-05	0.05088	2.3674E-05	465.2869139636133	47.655	0.37767	47.714	47.585	47.963	0.059093	-0.065579	-9.7489E-06	NaN	35.618	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331220	+		1846	26563	1209	1209							0.09219528591370363
ALKKLSPSL	9	Unmodified	_ALKKLSPSL_					0	0	0		EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7431945800781	2	478.810585	955.606617	-0.27166	-0.00013007	0.90669	0.00043414	0.63504	0.00030406	478.8110405003338	30.302	0.33188	30.311	30.123	30.455	0.0086708					11	7	2	0	0	0	0.024263	1	1894	1894		60.972	9.6365	1	44865			1847	704	1210	1210	2229	2229					0.12703807862385474
ALKKLSPSL	9	Unmodified	_ALKKLSPSL_					0	0	0		EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.810585	955.606617	-0.57726	-0.0002764	1.525	0.00073016	0.94769	0.00045377	478.81127146677505	30.334	0.37187	30.334	30.137	30.508	0	0.011606	0.00022974	NaN	60.972	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32356			1848	704	1210	1210							0.12703807862385474
ALKKYKMS	8	Unmodified	_ALKKYKMS_					0	0	0		ENST00000461221.5_1_17:41276046-41277202:-|nuORF	ENST00000461221.5_1_17:41276046-41277202:-|nuORF	ENST00000461221.5_1_17:41276046-41277202:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.25909423828125	2	484.783513	967.552473	-0.71483	-0.00034654	1.741	0.00084402	1.0262	0.00049748	484.7836990047687	28.298	0.8557	28.053	27.55	28.406	-0.24524					24	20	2	0	0	0	0.027866	1	1632	1632		65.803	23.329	1	53184			1849	14678	1211	1211	2230	2230					0.06739892439156847
ALKKYKMS	8	Unmodified	_ALKKYKMS_					0	0	0		ENST00000461221.5_1_17:41276046-41277202:-|nuORF	ENST00000461221.5_1_17:41276046-41277202:-|nuORF	ENST00000461221.5_1_17:41276046-41277202:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.783513	967.552473	-0.73827	-0.0003579	4.138	0.002006	3.3997	0.0016481	484.78533151614704	28.132	0.52576	27.963	27.728	28.254	-0.16897	-0.067281	0.00051308	NaN	65.803	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56887			1850	14678	1211	1211							0.06739892439156847
ALKKYKMS	8	Unmodified	_ALKKYKMS_					0	0	0		ENST00000461221.5_1_17:41276046-41277202:-|nuORF	ENST00000461221.5_1_17:41276046-41277202:-|nuORF	ENST00000461221.5_1_17:41276046-41277202:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.783513	967.552473	-0.19677	-9.5389E-05	3.8153	0.0018496	3.6185	0.0017542	484.7850123192288	28.227	0.56169	28.075	27.922	28.484	-0.15195	0.044737	0.0002002	NaN	65.803	14	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77861			1851	14678	1211	1211							0.06739892439156847
ALKLCLPPE	9	Unmodified	_ALKLCLPPE_					0	0	0			REV__nc|ENSG00000172367|Q86UT5-3|NHERF4	REV__nc|ENSG00000172367|Q86UT5-3|NHERF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.7566223144531	2	492.283346	982.552139	-0.24295	-0.0001196	3.4711	0.0017088	3.2282	0.0015892	492.2849946576942	23.818	0.57411	23.616	23.438	24.012	-0.20193					27	12	3	0	0	0	0.024354	1	986	986		38.806	0	1	174300	+		1852	26664	1212	1212	2231	2231					0.06016472719306876
ALKLGAKK	8	Unmodified	_ALKLGAKK_					0	0	0		ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1;REV__nc|ENSG00000168803|Q6DHV7-2|ADAL	ENSG00000130707|ENST00000352480|ASS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.1986389160156	2	414.786913	827.559273	0.50268	0.00020851	-0.01139	-4.7245E-06	0.49129	0.00020378	414.78696692422625	20.772	0.34438	20.576	20.385	20.73	-0.19577					10	6	2	0	0	0	0.027866	1	587	587		14.664	0	1	29833			1853	4443;26294	1213	1213	2232	2232					0.1385957338203525
ALKLLAPVE	9	Unmodified	_ALKLLAPVE_					0	0	0			REV__ENSG00000177476|ENST00000320002|OR2G3	REV__ENSG00000177476|ENST00000320002|OR2G3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.30560302734375	2	477.305136	952.595718	0.032115	1.5329E-05	0.69838	0.00033334	0.7305	0.00034867	477.30511288591657	91.437	0.76231	91.424	91.115	91.878	-0.012383					37	17	3	0	0	0	0.94809	1	11551	11551		29.15	4.9468	1	1404700	+		1854	27117	1214	1214	2233	2233					0.11752405488084605
ALKLRAEP	8	Unmodified	_ALKLRAEP_					0	0	0			REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.753173828125	2	449.279452	896.544351	-0.5395	-0.00024239	0.3555	0.00015972	-0.184	-8.2668E-05	449.27971813441843	40.634	0.78361	40.657	40.013	40.797	0.023003					26	21	2	0	0	0	0.027866	1	3451	3451		23.042	0	1	165630	+		1855	35458	1215	1215	2234	2234					0.09194081514033314
ALKQSESIL	9	Unmodified	_ALKQSESIL_					0	0	0			REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.80364990234375	2	494.787307	987.560061	-0.067432	-3.3364E-05	-1.7076	-0.00084492	-1.7751	-0.00087829	494.78571646938934	23.64	0.59815	23.438	23.237	23.835	-0.20193					27	13	4	0	0	0	0.024354	1	930	930		57.811	13.28	1	118250	+		1856	22089	1217	1216	2235	2235					0.06578323240444206
ALKQSESIL	9	Unmodified	_ALKQSESIL_					0	0	0			REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.787307	987.560061	-0.23971	-0.0001186	0.41378	0.00020473	0.17407	8.6129E-05	494.7872032811656	23.575	0.40555	23.395	23.201	23.607	-0.17989	-0.015961	0.0012483	NaN	57.811	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104050	+		1857	22089	1217	1216							0.06578323240444206
ALKRQGRTLYG	11	Unmodified	_ALKRQGRTLYG_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7277526855469	3	421.582444	1261.7255	-1.0374	-0.00043734	1.3727	0.00057871	0.33532	0.00014136	421.5830186391345	25.093	0.34095	25.058	24.86	25.201	-0.034395					12	7	2	0	0	0	0.024782	1	1156	1156		25.126	11.618	1	50046			1858	6665	1218	1217	2236	2236					0.10510974819953844
ALKSDFSSL	9	Unmodified	_ALKSDFSSL_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.25909423828125	2	484.258382	966.502212	-0.62246	-0.00030143	-0.603	-0.00029201	-1.2255	-0.00059344	484.2579896725806	28.191	1.0713	27.946	27.506	28.578	-0.24524					73	25	4	0	0	0	0.16468	1	1632	1632		96.19	11.275	1	1459200	+		1859	26011	1219	1218	2237	2237					0.017620613150143072
ALKSDFSSL	9	Unmodified	_ALKSDFSSL_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.258382	966.502212	-0.78038	-0.00037791	-0.53053	-0.00025692	-1.3109	-0.00063482	484.25806996227857	28.005	0.76686	27.837	27.528	28.295	-0.16834	-0.062336	0.00023058	NaN	96.19	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597350	+		1860	26011	1219	1218							0.017620613150143072
ALKSDFSSL	9	Unmodified	_ALKSDFSSL_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.258382	966.502212	-0.13135	-6.3605E-05	-1.1962	-0.00057928	-1.3276	-0.00064289	484.257704328185	28.066	0.76067	27.914	27.482	28.243	-0.15195	0.015379	-0.00041416	NaN	96.19	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	851560	+		1861	26011	1219	1218							0.017620613150143072
ALKSIGASI	9	Unmodified	_ALKSIGASI_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.2660827636719	2	430.26601	858.517468	0.8269	0.00035579	-0.59445	-0.00025577	0.23245	0.00010001	430.2656692127039	20.852	1.0337	20.656	20.236	21.27	-0.19577					48	20	4	0	0	0	0.35646	1	605	605		68.787	5.4806	1	1156800			1862	7647	1220	1219	2238	2238					0.08254972902852842
ALKTREIFT	9	Unmodified	_ALKTREIFT_					0	0	0		nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8154907226562	2	539.816399	1077.61824	-0.74583	-0.00040261	-0.25248	-0.00013629	-0.99831	-0.0005389	539.8162189750537	43.594	0.80724	43.482	43.145	43.953	-0.11253					51	21	4	0	0	0	0.50848	1	4022	4022		58.782	2.0609	1	2147800			1863	3784	1221	1220	2239	2239					0.0825400488570267
ALKTTVILI	9	Unmodified	_ALKTTVILI_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4;CXCR4|p.R235P|1|0.36|ENSG00000121966|chr2:136115224-136115224|C/G|missense_variant	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2816467285156	2	486.328611	970.642668	-0.20783	-0.00010107	0.06141	2.9865E-05	-0.14642	-7.1209E-05	486.32863474916627	89.419	0.12651	89.419	89.313	89.44	0					4	2	2	0	0	0	0.024541	1	11276	11276		24.203	15.38	1	74766			1864	3902	1222	1221	2240	2240					0.15617265039236372
ALKVRTSL	8	Unmodified	_ALKVRTSL_					0	0	0			REV__ENST00000229238.4_1_12:6602309-6602420:-|nuORF	REV__ENST00000229238.4_1_12:6602309-6602420:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.2873840332031	2	444.287277	886.560001	-0.2733	-0.00012142	0.2181	9.6899E-05	-0.055201	-2.4525E-05	444.2872653789115	35.344	0.68591	35.158	34.835	35.521	-0.18675					49	17	4	0	0	0	0.80469	1	2676	2676		58.782	4.0056	1	4007200	+		1865	29397	1223	1222	2241	2241					0.11218368031097725
ALKVVKKV	8	Unmodified	_ALKVVKKV_					0	0	0		nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.73516845703125	2	442.818213	883.621873	-0.45044	-0.00019946	0.44443	0.0001968	-0.0060166	-2.6642E-06	442.8183327001389	23.237	0.36485	23.058	22.836	23.201	-0.17989					11	7	2	0	0	0	0.027866	1	909	909		3.9852	0	1	76806			1866	4602	1224	1223	2242	2242					0.175407194502327
ALKVVTKGRT	10	Unmodified	_ALKVVTKGRT_					0	0	0		ENST00000257700.6_1_7:105172682-105177020:+|nuORF	ENST00000257700.6_1_7:105172682-105177020:+|nuORF	ENST00000257700.6_1_7:105172682-105177020:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2782592773438	2	536.84549	1071.67643	-0.40738	-0.0002187	0.11369	6.1033E-05	-0.2937	-0.00015767	536.845451239945	24.763	0.57899	24.841	24.594	25.173	0.078344					25	12	3	0	0	0	0.03519	1	1033	1033		51.193	5.2204	1	150810			1867	11408	1225	1224	2243	2243					0.1434568653100996
ALKWNRKG	8	Unmodified	_ALKWNRKG_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7905578613281	2	486.790518	971.566484	-0.97284	-0.00047357	1.0013	0.00048743	0.028463	1.3855E-05	486.79080649089747	37.597	0.71998	37.378	37.114	37.834	-0.2195					61	18	5	0	0	0	0.96719	1	3049	3049		42.474	1.9018	1	2567000			1868	2353	1226	1225	2244	2244					0.07956305982463618
ALKYENFDDIK	11	Unmodified	_ALKYENFDDIK_					0	0	0		PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.5653991699219	3	452.566237	1354.67688	1.8136	0.00082076	-4.0801	-0.0018465	-2.2665	-0.0010257	452.5644125482161	19.236	1.4254	19.003	18.632	20.057	-0.23345					93	28	6	0	0	0	1.0259	1	381	381		31.068	2.6844	1	1058600			1869	1630	1227	1226	2245	2245					0.013730166695268053
ALLAACLLRFS	11	Unmodified	_ALLAACLLRFS_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3429565429688	2	589.341726	1176.6689	-0.20383	-0.00012013	2.4144	0.0014229	2.2106	0.0013028	589.3430115300414	103.72	0.59683	103.6	103.36	103.96	-0.12724					38	13	4	0	0	0	1.0017	1	12894	12894		36.447	3.6343	1	525960			1870	2494	1228	1227	2246	2246					0.08763210939059718
ALLAFCLKA	9	Unmodified	_ALLAFCLKA_					0	0	0		ENSG00000255833|ENST00000537858|TIFAB	ENSG00000255833|ENST00000537858|TIFAB	ENSG00000255833|ENST00000537858|TIFAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.2601318359375	2	475.280606	948.546659	-0.84668	-0.00040241	-0.94715	-0.00045016	-1.7938	-0.00085257	475.2812221383114	43.81	0.44593	43.566	43.344	43.79	-0.2444					22	11	3	0	0	0	0.024466	1	4017	4017		33.516	8.0654	1	145820			1871	10897	1229	1228	2247	2247					0.07032793927476177
ALLALIRGSR	10	Unmodified	_ALLALIRGSR_					0	0	0			REV__ENST00000361951.4_1_1:173793819-173794101:+|nuORF	REV__ENST00000361951.4_1_1:173793819-173794101:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3065185546875	2	535.345658	1068.67676	-0.67603	-0.00036191	-3.2162	-0.0017218	-3.8922	-0.0020837	535.3438341478707	78.631	1.4136	78.631	78.202	79.616	0					53	33	2	0	0	0	0.03519	1	9678	9678		30.318	11.993	1	179990	+		1872	30959	1230	1229	2248	2248					0.14517106250832512
ALLALLPEL	9	Unmodified	_ALLALLPEL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.8081970214844	2	476.807511	951.600469	0.3322	0.0001584	0.30513	0.00014549	0.63734	0.00030389	476.80739076683943	102.69	0.64731	102.69	102.32	102.97	0.0054169					27	15	3	0	0	0	0.78069	1	13128	13128		40.573	1.7665	1	396350			1873	4149	1231	1230	2249	2249					0.12273289630843465
ALLALLPEL	9	Unmodified	_ALLALLPEL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.8076477050781	2	476.807511	951.600469	0.38963	0.00018578	0.86621	0.00041301	1.2558	0.00059879	476.80751584620253	102.72	0.59859	102.72	102.46	103.06	-0.0046005					29	14	3	0	0	0	0.78069	2	13082	13082;13093		40.573	7.7521	1	405630			1874	4149	1231	1230	2250;2251	2250					0.12273289630843465
ALLALLPEL	9	Unmodified	_ALLALLPEL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.80731201171875	2	476.807511	951.600469	0.019887	9.4824E-06	0.3356	0.00016002	0.35548	0.0001695	476.80741843361733	102.5	0.56641	102.37	102.15	102.72	-0.12666					27	12	3	0	0	0	0.78069	1	12739	12739		40.573	8.6178	1	473690			1875	4149	1231	1230	2252	2252					0.12273289630843465
ALLALLTC	8	Unmodified	_ALLALLTC_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.5428161621094	2	409.246232	816.477911	0.035022	1.4333E-05	2.9885	0.0012231	3.0236	0.0012374	409.24819098780966	21.964	0.52598	21.773	21.516	22.042	-0.19072					24	10	3	0	0	0	0.027866	1	747	747		9.4706	0	1	114140			1876	9647	1232	1231	2253	2253					0.06233129627764811
ALLALQWGLL	10	Unmodified	_ALLALQWGLL_					0	0	0		ENST00000549114.5_1_16:779204-779453:+|nuORF;ENSG00000103253|ENST00000389703|HAGHL	ENST00000549114.5_1_16:779204-779453:+|nuORF	ENST00000549114.5_1_16:779204-779453:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.27978515625	2	549.33951	1096.66447	-0.0039452	-2.1672E-06	-3.116	-0.0017117	-3.1199	-0.0017139	549.3379976672162	72.747	0.69514	72.465	72.385	73.08	-0.28124					20	16	2	0	0	0	0.03519	1	8879	8879		35.618	14.671	1	88002			1877	2486	1233	1232	2254	2254					0.1200006978779129
ALLALSGLLR	10	Unmodified	_ALLALSGLLR_					0	0	0		ENST00000417032.1_1_7:158799320-158801327:+|nuORF	ENST00000417032.1_1_7:158799320-158801327:+|nuORF	ENST00000417032.1_1_7:158799320-158801327:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8146362304688	2	513.837134	1025.65972	-0.88001	-0.00045218	0.36163	0.00018582	-0.51838	-0.00026636	513.8374532390196	45.013	0.14135	44.864	44.796	44.938	-0.1488					5	3	2	0	0	0	0.03519	1	4321	4321		35.618	13.658	1	149210			1878	13910	1234	1233	2255	2255					0.14791185645026417
ALLANRWLK	9	Unmodified	_ALLANRWLK_					0	0	0			REV__nc|ENSG00000196371|P22083-2|FUT4	REV__nc|ENSG00000196371|P22083-2|FUT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.308837890625	2	542.834926	1083.6553	-0.82811	-0.00044953	0.45503	0.00024701	-0.37308	-0.00020252	542.8350680009022	70.503	0.45464	70.516	70.272	70.727	0.012421					30	10	4	0	0	0	0.024541	1	8463	8463		30.504	14.03	1	2522800	+		1879	28173	1235	1234	2256	2256					0.11681721222112174
ALLAPFPPP	9	Unmodified	_ALLAPFPPP_					0	0	0			REV__ENST00000373880.8_1_10:60936426-60936663:+|nuORF	REV__ENST00000373880.8_1_10:60936426-60936663:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.77264404296875	2	461.773471	921.53239	0.16911	7.8089E-05	-2.2625	-0.0010447	-2.0934	-0.00096666	461.7720766093848	98.419	0.93749	98.419	98.063	99.001	0					47	21	3	0	0	0	0.80342	1	12573	12573		39.021	7.0666	1	819260	+		1880	31276	1236	1235	2257	2257					0.0684846477084875
ALLATALSPP	10	Unmodified	_ALLATALSPP_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MSMS	OPSCC_39_ClassI_Rep-3	3	477.2846374511719	2	477.286943	952.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.905	1	20.974	20.474	21.474	0.068901								0	0	0	0.7491	1	554	554		42.396	4.5846	1				1881	6526	1237	1236	2258	2258					0.08115528591372367
ALLAVRSDY	9	Unmodified	_ALLAVRSDY_					0	0	0		nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2596435546875	2	504.279649	1006.54475	0.38342	0.00019335	-4.466	-0.0022521	-4.0825	-0.0020587	504.27699771078	22.37	0.73946	22.181	22.007	22.746	-0.18894					21	15	3	0	0	0	0.023417	1	838	838		68.787	27.36	1	96957			1882	18138	1238	1237	2259	2259					0.04173456443231771
ALLAVRSDY	9	Unmodified	_ALLAVRSDY_					0	0	0		nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.259521484375	2	504.279649	1006.54475	-0.69126	-0.00034859	-3.8236	-0.0019282	-4.5149	-0.0022768	504.2774548803365	22.486	0.64329	22.301	22.094	22.738	-0.18539					22	13	3	0	0	0	0.024263	1	831	831		71.296	14.575	1	127280			1883	18138	1238	1237	2260	2260					0.04173456443231771
ALLCDLPLV	9	Unmodified	_ALLCDLPLV_					0	0	0			REV__ENST00000520536.1_1_8:22475798-22477192:+|nuORF	REV__ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.73590087890625	2	478.777896	955.54124	1.5974	0.00076482	1.7142	0.0008207	3.3116	0.0015855	478.7793432321637	59.872	0.58175	59.872	59.637	60.219	0					38	15	4	0	0	0	0.024325	1	6891	6891		40.573	11.423	1	666440	+		1884	34295	1239	1238	2261	2261					0.061690703450153705
ALLCRKKPP	9	Unmodified	_ALLCRKKPP_					0	0	0			REV__ENSG00000204272|ENST00000374922|NBDY	REV__ENSG00000204272|ENST00000374922|NBDY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2942504882812	2	513.318054	1024.62156	-1.1009	-0.00056513	-1.1855	-0.00060852	-2.2864	-0.0011736	513.317365862638	53.88	0.68902	53.743	53.462	54.151	-0.13617					36	21	2	0	0	0	0.024541	1	5657	5657		12.959	0	1	355530	+		1885	28583	1240	1239	2262	2262					0.1102297645870749
ALLDASGPEL	10	Unmodified	_ALLDASGPEL_					0	0	0			REV__PSD2|p.P302L|1|0.17|ENSG00000146005|chr5:139814253-139814253|C/T|missense_variant	REV__PSD2|p.P302L|1|0.17|ENSG00000146005|chr5:139814253-139814253|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2631530761719	2	493.263665	984.512776	0.75936	0.00037457	-0.83972	-0.0004142	-0.080356	-3.9637E-05	493.26327053213487	71.418	1.4371	71.13	70.546	71.983	-0.28858					114	36	6	0	0	0	0.34101	1	8605	8605		104.75	3.1458	1	11187000	+		1886	37412	1241	1240	2263	2263					0.01990043969431099
ALLDASGPEL	10	Unmodified	_ALLDASGPEL_					0	0	0			REV__PSD2|p.P302L|1|0.17|ENSG00000146005|chr5:139814253-139814253|C/T|missense_variant	REV__PSD2|p.P302L|1|0.17|ENSG00000146005|chr5:139814253-139814253|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.26324462890625	2	493.263665	984.512776	-0.011324	-5.586E-06	0.12152	5.9939E-05	0.11019	5.4353E-05	493.26372478067407	71.143	1.5242	71.154	70.465	71.989	0.010735					97	38	4	0	0	0	0.34101	1	8518	8518		104.75	3.1458	1	11193000	+		1887	37412	1241	1240	2264	2264					0.01990043969431099
ALLDEMMSDL	10	Unmodified	_ALLDEMMSDL_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3110961914062	2	569.26195	1136.50935	-2.0195	-0.0011496	-3.6919	-0.0021017	-5.7114	-0.0032513	569.2596906241376	52.084	0.46938	51.815	51.62	52.089	-0.26903					20	12	3	0	0	0	0.03519	1	5405	5405		32.812	4.9302	1	152650			1888	8857	1242	1241	2265	2265					-0.05344710191093327
ALLDEMMSDL	10	Unmodified	_ALLDEMMSDL_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	569.26195	1136.50935	0.18389	0.00010468	-5.6335	-0.003207	-5.4496	-0.0031023	569.2582070956745	51.812	0.32821	51.694	51.468	51.796	-0.11875	-0.046378	0.0010892	NaN	32.812	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141220			1889	8857	1242	1241							-0.05344710191093327
ALLDEMMSDL	10	Unmodified	_ALLDEMMSDL_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	569.26195	1136.50935	0.48923	0.0002785	-7.9868	-0.0045466	-7.4976	-0.0042681	569.2572118325578	51.896	0.40243	51.712	51.524	51.927	-0.18404	-0.028134	-0.0015901	NaN	32.812	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168770			1890	8857	1242	1241							-0.05344710191093327
ALLDGMGARGG	11	Oxidation (M)	_ALLDGM(Oxidation (M))GARGG_		ALLDGM(1)GARGG		ALLDGM(90)GARGG	0	0	1			REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2566528320312	2	517.258391	1032.50223	0.13829	7.1533E-05	-4.0719	-0.0021062	-3.9336	-0.0020347	517.2561008486741	81.947	1.3263	81.824	81.428	82.754	-0.12298					61	31	3	0	0	0	0.28593	1	10186	10186		90.37	8.1293	1	2174200	+		1891	32397	1243	1242	2266	2266		894			-0.012722619566375215
ALLDGMGARGG	11	Oxidation (M)	_ALLDGM(Oxidation (M))GARGG_					0	0	1			REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.258391	1032.50223	-0.66664	-0.00034483	-4.1847	-0.0021646	-4.8514	-0.0025094	517.2566004713988	81.823	1.1571	81.823	81.464	82.622	0	0.062553	-0.00037118	NaN	90.37	68	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2074900	+		1892	32397	1243	1242				894			-0.012722619566375215
ALLDGMGARGG	11	Oxidation (M)	_ALLDGM(Oxidation (M))GARGG_					0	0	1			REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	517.258391	1032.50223	0.13829	7.1533E-05	-4.0719	-0.0021062	-3.9336	-0.0020347	517.2561008486741	81.947	1.3263	81.824	81.428	82.754	-0.12298	0.063525	-0.00025443	NaN	90.37	61	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2174200	+		1893	32397	1243	1242				894			-0.012722619566375215
ALLDGMGARGG	11	Oxidation (M)	_ALLDGM(Oxidation (M))GARGG_					0	0	1			REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.258391	1032.50223	-0.93164	-0.0004819	-2.9841	-0.0015436	-3.9158	-0.0020255	517.2566993547865	81.777	0.94913	81.803	81.495	82.444	0.025711	0.042169	0.00087083	NaN	90.37	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2314200	+		1894	32397	1243	1242				894			-0.012722619566375215
ALLDGMGARGG	11	Oxidation (M)	_ALLDGM(Oxidation (M))GARGG_					0	0	1			REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	REV__ENST00000433206.6_1_17:37075175-37075400:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	517.258391	1032.50223	-0.63139	-0.00032659	-3.297	-0.0017054	-3.9284	-0.002032	517.2565159337505	81.864	0.81131	81.722	81.316	82.127	-0.14248	-0.038552	0.00054714	NaN	90.37	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635130	+		1895	32397	1243	1242				894			-0.012722619566375215
ALLDGRVQL	9	Unmodified	_ALLDGRVQL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.7939453125	2	492.795466	983.57638	0.78135	0.00038505	-1.5567	-0.00076712	-0.77533	-0.00038208	492.79456032427436	62.983	1.2229	63.037	62.474	63.697	0.054104					61	31	3	0	0	0	0.053401	1	7263	7263		127.46	14.05	1	3154200			1896	9695	1244	1243	2267	2267					0.08393449197183145
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.3106994628906	2	510.310418	1018.60628	0.11192	5.7113E-05	-0.88643	-0.00045235	-0.77451	-0.00039524	510.3100044819327	77.104	2.2335	77.104	76.759	78.993	0					153	53	5	0	0	0	0.016758	6	9494	9494;9506;9524;9536;9555;9568		153.04	42.546	1	69317000			1897	8779	1245	1244	2268;2269;2270;2271;2272;2273	2268					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.3099060058594	2	510.310418	1018.60628	-0.14572	-7.4361E-05	-0.4635	-0.00023653	-0.60922	-0.00031089	510.3101899344777	77.311	2.4849	77.1	76.585	79.07	-0.21087					166	59	5	0	0	0	0.016758	5	9495	9483;9495;9525;9537;9556		153.04	36.395	1	70771000			1898	8779	1245	1244	2274;2275;2276;2277;2278	2275					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.3098449707031	2	510.310418	1018.60628	-0.18397	-9.3883E-05	-0.45001	-0.00022964	-0.63398	-0.00032353	510.31019131871864	77.111	2.0348	77.125	76.737	78.771	0.013496					153	48	5	0	0	0	0.03201	6	9436	9414;9424;9436;9492;9503;9517		139.97	29.843	1	66216000			1899	8779	1245	1244	2279;2280;2281;2282;2283;2284	2281					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.3106994628906	2	510.310418	1018.60628	0.35587	0.00018161	-0.57806	-0.00029499	-0.22218	-0.00011338	510.310070780314	77.339	2.6702	77.077	76.094	78.764	-0.26202					173	63	5	0	0	0	0.016758	9	9217	9151;9163;9175;9184;9193;9205;9217;9230;9244		153.04	51.853	1	46011000			1900	8779	1245	1244	2285;2286;2287;2288;2289;2290;2291;2292;2293	2291					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.3105773925781	2	510.310418	1018.60628	0.55732	0.00028441	-0.67378	-0.00034384	-0.11646	-5.943E-05	510.31003056049474	77.214	2.3135	76.971	76.537	78.85	-0.24232					164	55	5	0	0	0	0.013887	8	9213	9165;9173;9185;9194;9203;9213;9225;9238		195.81	64.022	1	48176000			1901	8779	1245	1244	2294;2295;2296;2297;2298;2299;2300;2301	2299					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3;IMP3|p.S153Afs*20|1|0.34|ENSG00000177971|chr15:75639712-75639713|-/GC|frameshift_variant	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.3102111816406	2	510.310418	1018.60628	-0.48022	-0.00024506	0.070294	3.5872E-05	-0.40992	-0.00020919	510.3104219802773	77.088	2.2371	76.926	76.488	78.725	-0.16196					162	52	6	0	0	0	0.014034	7	9186	9140;9152;9164;9175;9186;9198;9211		166.68	49.775	1	53962000			1902	8779	1245	1244	2302;2303;2304;2305;2306;2307;2308	2306					0.09772388142516775
ALLDLPIQ	8	Unmodified	_ALLDLPIQ_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7681579589844	2	441.768386	881.522219	0.37011	0.0001635	-1.3269	-0.00058618	-0.95679	-0.00042268	441.76786199204633	102.85	1.6021	102.85	102.5	104.11	-0.0046005					103	38	6	0	0	0	1.0574	1	13140	13140		26.796	1.3459	1	25278000			1903	1055	1246	1245	2309	2309					0.07671857045625075
ALLDMDCLPY	10	Unmodified	_ALLDMDCLPY_					0	0	0		ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.7821655273438	2	577.267035	1152.51952	-1.6443	-0.00094921	-2.6167	-0.0015106	-4.2611	-0.0024598	577.2649300332307	65.55	0.33139	65.337	65.215	65.547	-0.21327					10	7	2	0	0	0	0.03519	1	7507	7507		45.952	0	1	71637			1904	7532	1247	1246	2310	2310					-0.05064102465848919
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.766845703125	2	471.766374	941.518196	0.86819	0.00040958	-0.36257	-0.00017105	0.50562	0.00023853	471.7658709209255	77.1	1.4857	77.1	76.556	78.042	0					77	35	3	0	0	0	0.014013	3	9507	9507;9518;9530		166.78	61.694	1	7851600			1905	4597	1248	1247	2311;2312;2313	2311					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.76629638671875	2	471.766374	941.518196	0.29189	0.00013771	0.12743	6.0119E-05	0.41933	0.00019782	471.7661586281301	77.318	1.4534	77.107	76.544	77.997	-0.21087					73	34	3	0	0	0	0.013094	3	9527	9502;9513;9527		181.81	73.718	1	7961200			1906	4597	1248	1247	2314;2315;2316	2316					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.76641845703125	2	471.766374	941.518196	0.51811	0.00024443	-0.060531	-2.8556E-05	0.45758	0.00021587	471.7660695175484	77.138	1.5805	77.152	76.532	78.112	0.013504					76	37	3	0	0	0	0.014013	3	9454	9431;9442;9454		166.78	64.009	1	7393600			1907	4597	1248	1247	2317;2318;2319	2319					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.767822265625	2	471.766374	941.518196	0.51509	0.000243	-0.054589	-2.5753E-05	0.4605	0.00021725	471.7661238847563	77.425	0.84059	77.163	76.601	77.442	-0.26202					28	20	2	0	0	0	0.057894	1	9197	9197		125.81	53.937	1	599320			1908	4597	1248	1247	2320	2320					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MSMS	OPSCC_40_ClassI_Rep-2	5	471.76434326171875	2	471.766374	941.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.291	1	77.049	76.549	77.549	-0.24232								0	0	0	0.1093	1	9201	9201		90.37	10.919	1				1909	4597	1248	1247	2321	2321					0.04509767551905952
ALLDNNIGL	9	Unmodified	_ALLDNNIGL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MSMS	OPSCC_40_ClassI_Rep-3	6	471.7695007324219	2	471.766374	941.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.197	1	77.035	76.535	77.535	-0.16196								0	0	0	0.025861	1	9173	9173		122.18	39.935	1				1910	4597	1248	1247	2322	2322					0.04509767551905952
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.3061218261719	2	493.305667	984.596781	0.043488	2.1453E-05	-0.80663	-0.00039791	-0.76314	-0.00037646	493.30536242045883	69.15	1.5467	69.15	68.482	70.029	0					144	39	5	0	0	0	0.053401	9	8302	8292;8302;8314;8326;8338;8350;8363;8378;8390		127.46	45.275	1	72910000			1911	6477	1249	1248	2323;2324;2325;2326;2327;2328;2329;2330;2331	2324					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3056335449219	2	493.305667	984.596781	0.49122	0.00024232	-1.2253	-0.00060444	-0.73406	-0.00036212	493.30514414088213	69.478	1.4816	69.185	68.556	70.038	-0.29292					147	37	6	0	0	0	0.053401	8	8309	8309;8321;8333;8345;8357;8369;8382;8396		127.46	45.866	1	70953000			1912	6477	1249	1248	2332;2333;2334;2335;2336;2337;2338;2339	2332					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3057556152344	2	493.305667	984.596781	-0.46211	-0.00022796	-0.40959	-0.00020205	-0.8717	-0.00043001	493.30555264308265	69.248	1.5047	69.263	68.569	70.073	0.015129					138	38	5	0	0	0	0.053401	9	8279	8221;8231;8243;8255;8267;8279;8291;8304;8318		127.46	47.522	1	72138000			1913	6477	1249	1248	2340;2341;2342;2343;2344;2345;2346;2347;2348	2345					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.30596923828125	2	493.305667	984.596781	-1.0046	-0.00049558	0.57022	0.00028129	-0.4344	-0.00021429	493.3059039616855	69.511	1.2477	69.244	68.912	70.159	-0.26724					91	29	4	0	0	0	0.041068	5	8054	8045;8054;8066;8078;8091		132.76	47.522	1	10111000			1914	6477	1249	1248	2349;2350;2351;2352;2353	2350					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3057556152344	2	493.305667	984.596781	0.23729	0.00011706	-0.63115	-0.00031135	-0.39386	-0.00019429	493.3053179249201	69.428	1.3578	69.177	68.824	70.182	-0.25063					92	32	4	0	0	0	0.12914	5	8041	8041;8049;8061;8074;8087		104.06	37.664	1	13654000			1915	6477	1249	1248	2354;2355;2356;2357;2358	2354					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.30694580078125	2	493.305667	984.596781	-0.1615	-7.967E-05	-0.20651	-0.00010187	-0.36801	-0.00018154	493.305514268187	69.347	1.4001	69.124	68.727	70.127	-0.22245					98	33	5	0	0	0	0.048057	5	8057	8022;8033;8045;8057;8070		129.42	40.778	1	10134000			1916	6477	1249	1248	2359;2360;2361;2362;2363	2362					0.10386619857001733
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7768859863281	2	476.776742	951.538931	0.51458	0.00024534	-0.45821	-0.00021847	0.056362	2.6872E-05	476.776332529395	68.764	1.4589	68.764	68.332	69.791	0					101	37	5	0	0	0	0.021668	5	8243	8234;8243;8255;8268;8282		148.21	56.015	1	9489000			1917	1288	1250	1249	2364;2365;2366;2367;2368	2365					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7772216796875	2	476.776742	951.538931	0.66098	0.00031514	-0.53527	-0.00025521	0.12571	5.9935E-05	476.7762862059044	69.068	1.3478	68.775	68.366	69.714	-0.29267					93	34	5	0	0	0	0.013018	4	8286	8252;8262;8274;8286		173.85	81.539	1	9262100			1918	1288	1250	1249	2369;2370;2371;2372	2372					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7772216796875	2	476.776742	951.538931	0.17957	8.5613E-05	-0.060797	-2.8987E-05	0.11877	5.6626E-05	476.77654529266357	68.779	1.4149	68.794	68.459	69.874	0.015129					95	36	5	0	0	0	0.015769	5	8171	8162;8171;8183;8197;8210		157.99	69.346	1	10011000			1919	1288	1250	1249	2373;2374;2375;2376;2377	2374					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.776611328125	2	476.776742	951.538931	-0.50392	-0.00024026	0.11807	5.6294E-05	-0.38584	-0.00018396	476.7766614766663	69.116	0.786	68.854	68.547	69.333	-0.26166					42	18	3	0	0	0	0.049585	3	8001	7991;8001;8015		128.86	43.502	1	2004900			1920	1288	1250	1249	2378;2379;2380	2379					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7767028808594	2	476.776742	951.538931	0.27322	0.00013026	-0.76318	-0.00036387	-0.48996	-0.0002336	476.7762195297497	69.006	0.81597	68.763	68.509	69.325	-0.24277					42	19	3	0	0	0	0.028181	3	7998	7987;7998;8010		143.02	54.377	1	1842000			1921	1288	1250	1249	2381;2382;2383	2382					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7769775390625	2	476.776742	951.538931	0.043968	2.0963E-05	-0.71845	-0.00034254	-0.67449	-0.00032158	476.7762571595673	68.946	0.73756	68.716	68.439	69.177	-0.23047					38	17	3	0	0	0	0.015769	1	7981	7981		157.99	65.799	1	1832500			1922	1288	1250	1249	2384	2384					0.06122357931565148
ALLDWVTSV	9	Unmodified	_ALLDWVTSV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2772521972656	2	502.276575	1002.5386	-0.30377	-0.00015258	0.16339	8.2067E-05	-0.14038	-7.0512E-05	502.2765050982551	96.426	0.93576	96.426	96.034	96.969	0					57	21	4	0	0	0	0.08613	2	12308	12297;12308		115.46	49.03	1	2322300			1923	4256;18250	1251	1250	2385;2386	2386					0.037429382117238674
ALLDWVTSV	9	Unmodified	_ALLDWVTSV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.27716064453125	2	502.276575	1002.5386	0.54951	0.00027601	-0.67911	-0.0003411	-0.1296	-6.5096E-05	502.2760101656473	96.285	1.1944	96.291	95.818	97.013	0.0065002					63	27	4	0	0	0	0.15029	1	12265	12265		99.375	41.564	1	2305600			1924	4256;18250	1251	1250	2387	2387					0.037429382117238674
ALLDWVTSV	9	Unmodified	_ALLDWVTSV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2767028808594	2	502.276575	1002.5386	1.1412	0.00057322	-1.4315	-0.00071903	-0.29029	-0.0001458	502.27573291762775	96.432	0.98949	96.434	96.115	97.105	0.0020752					57	22	4	0	0	0	0.15029	2	12229	12229;12242		99.375	41.564	1	2002400			1925	4256;18250	1251	1250	2388;2389	2388					0.037429382117238674
ALLEEAALL	9	Unmodified	_ALLEEAALL_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.77886962890625	2	471.778951	941.543348	0.38025	0.0001794	-0.026297	-1.2406E-05	0.35396	0.00016699	471.77865100739274	78.83	1.1183	78.849	78.567	79.685	0.018669					43	26	3	0	0	0	0.24299	1	9703	9703		83.287	3.348	1	1439400			1926	6817	1252	1251	2390	2390					0.070238223544834
ALLELLHEL	9	Unmodified	_ALLELLHEL_					0	0	0		LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant;ENSG00000161904|ENST00000293760|LEMD2;ENST00000514636.1_1_6:33747875-33752267:-|nuORF	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.8135986328125	2	525.813325	1049.6121	0.071743	3.7724E-05	-0.51668	-0.00027168	-0.44494	-0.00023396	525.8129076261024	85.766	1.0749	85.571	85.258	86.333	-0.19508					68	24	4	0	0	0	0.08613	1	10395	10395		115.46	23.268	1	707150			1927	6899	1253	1252	2391	2391					0.08927486654192762
ALLELLHEL	9	Unmodified	_ALLELLHEL_					0	0	0		LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant;ENSG00000161904|ENST00000293760|LEMD2;ENST00000514636.1_1_6:33747875-33752267:-|nuORF	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.8128662109375	2	525.813325	1049.6121	0.62596	0.00032914	-1.1039	-0.00058043	-0.4779	-0.00025129	525.812568902851	85.662	1.0693	85.512	85.158	86.227	-0.14967					68	24	4	0	0	0	0.034181	1	10392	10392		138.24	58.303	1	764150			1928	6899	1253	1252	2392	2392					0.08927486654192762
ALLELLHEL	9	Unmodified	_ALLELLHEL_					0	0	0		LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant;ENSG00000161904|ENST00000293760|LEMD2;ENST00000514636.1_1_6:33747875-33752267:-|nuORF	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.8132934570312	2	525.813325	1049.6121	0.41644	0.00021897	-0.97491	-0.00051262	-0.55847	-0.00029365	525.8126306632122	85.697	1.1583	85.559	85.241	86.399	-0.13753					63	26	4	0	0	0	0.06122	1	10384	10384		124.59	55.807	1	855060			1929	6899	1253	1252	2393	2393					0.08927486654192762
ALLEMKSTD	9	Unmodified	_ALLEMKSTD_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.2592468261719	2	504.257525	1006.5005	0.35337	0.00017819	2.9013	0.001463	3.2547	0.0016412	504.2593070384721	22.676	1.0174	22.487	22.191	23.208	-0.18894					59	21	5	0	0	0	0.72875	1	816	816		44.117	1.6423	1	3235100			1930	9383	1254	1253	2394	2394					-0.002493157652679656
ALLENMEGLFL	11	Oxidation (M)	_ALLENM(Oxidation (M))EGLFL_		ALLENM(1)EGLFL		ALLENM(160)EGLFL	0	0	1		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.326171875	2	633.325939	1264.63732	0.10698	6.7752E-05	0.094756	6.0011E-05	0.20173	0.00012776	633.3258353496268	89.519	1.2793	89.519	89.061	90.34	0					78	30	4	0	0	0	0.00038508	4	11280	11280;11292;11304;11316		157.34	69.648	1	920160			1931	3119;18170	1255	1254	2395;2396;2397;2398	2395		115			0.015591733944347652
ALLENMEGLFL	11	Oxidation (M)	_ALLENM(Oxidation (M))EGLFL_		ALLENM(1)EGLFL		ALLENM(140)EGLFL	0	0	1		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3258056640625	2	633.325939	1264.63732	1.0585	0.00067038	-0.91639	-0.00058037	0.14211	9.0005E-05	633.3251602744715	89.435	1.4619	89.413	88.61	90.072	-0.021645					84	34	4	0	0	0	0.0098899	3	11251	11251;11262;11273		140.11	54.951	1	923920			1932	3119;18170	1255	1254	2399;2400;2401	2399		115			0.015591733944347652
ALLENMEGLFL	11	Oxidation (M)	_ALLENM(Oxidation (M))EGLFL_		ALLENM(1)EGLFL		ALLENM(120)EGLFL	0	0	1		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3260498046875	2	633.325939	1264.63732	-0.0052533	-3.327E-06	0.088389	5.5979E-05	0.083136	5.2652E-05	633.3258476328979	89.617	1.3625	89.631	88.878	90.24	0.013443					80	32	4	0	0	0	0.044845	3	11222	11210;11222;11239		123.21	50.678	1	1143600			1933	3119;18170	1255	1254	2402;2403;2404	2403		115			0.015591733944347652
ALLENMEGLFL	11	Oxidation (M)	_ALLENM(Oxidation (M))EGLFL_					0	0	1		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	633.325939	1264.63732	-1.4727	-0.00093272	1.052	0.00066627	-0.42071	-0.00026645	633.3265140122586	89.543	0.72184	89.38	89.052	89.774	-0.1626	-0.060568	0.0015223	NaN	157.34	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94171			1934	3119;18170	1255	1254				115			0.015591733944347652
ALLENMEGLFL	11	Oxidation (M)	_ALLENM(Oxidation (M))EGLFL_					0	0	1		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	633.325939	1264.63732	-0.7593	-0.00048088	0.064669	4.0957E-05	-0.69463	-0.00043993	633.3256626378964	89.466	0.76646	89.338	89.079	89.846	-0.12775	-0.10213	0.00027172	NaN	157.34	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87610			1935	3119;18170	1255	1254				115			0.015591733944347652
ALLENMEGLFL	11	Oxidation (M)	_ALLENM(Oxidation (M))EGLFL_					0	0	1		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	633.325939	1264.63732	-0.039028	-2.4717E-05	-0.015593	-9.8752E-06	-0.054621	-3.4593E-05	633.325694091392	89.499	0.89035	89.362	89.068	89.958	-0.13761	-0.078803	0.00017006	NaN	157.34	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98576			1936	3119;18170	1255	1254				115			0.015591733944347652
ALLENMEGLFL	11	Unmodified	_ALLENMEGLFL_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	625.32861328125	2	625.328482	1248.64241	-0.537	-0.0003358	1.0804	0.00067562	0.54342	0.00033982	625.3288815902836	103	0.61476	103	102.77	103.38	0					41	14	5	0	0	0	0.014736	1	13216	13216		133.99	58.95	1	1370400			1937	3119;18170	1255	1255	2405	2405					0.028034772570663336
ALLENMEGLFL	11	Unmodified	_ALLENMEGLFL_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	625.3286743164062	2	625.328482	1248.64241	0.32379	0.00020248	0.21525	0.0001346	0.53904	0.00033708	625.3283930145606	102.97	0.60461	102.97	102.71	103.31	0.0054245					34	14	3	0	0	0	0.083138	2	13175	13175;13187		112.11	44.614	1	1388500			1938	3119;18170	1255	1255	2406;2407	2406					0.028034772570663336
ALLENMEGLFL	11	Unmodified	_ALLENMEGLFL_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	625.32861328125	2	625.328482	1248.64241	-0.26294	-0.00016442	0.78309	0.00048969	0.52015	0.00032526	625.3288120728596	103.01	0.52663	103.01	102.83	103.36	-0.0046082					36	12	4	0	0	0	0.15312	1	13147	13147		104.01	49.237	1	1227800			1939	3119;18170	1255	1255	2408	2408					0.028034772570663336
ALLENMEGLFL	11	Unmodified	_ALLENMEGLFL_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	625.328482	1248.64241	0.39537	0.00024723	0.10011	6.2604E-05	0.49548	0.00030984	625.3284660021465	102.9	1.0746	102.77	102.03	103.1	-0.12724	-0.1369	-0.00079854	NaN	133.99	39	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197590			1940	3119;18170	1255	1255							0.028034772570663336
ALLENMEGLFL	11	Unmodified	_ALLENMEGLFL_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-2|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	625.328482	1248.64241	0.23209	0.00014513	0.9037	0.00056511	1.1358	0.00071024	625.3291587875095	102.97	0.83442	102.8	102.29	103.12	-0.17034	-0.1129	0.00020646	NaN	133.99	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243050			1941	3119;18170	1255	1255							0.028034772570663336
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.77105712890625	2	485.782025	969.549496	0.18346	8.9121E-05	-0.37266	-0.00018103	-0.1892	-9.191E-05	485.78171762569264	72.334	1.0942	72.334	71.978	73.072	0					73	26	4	0	0	0	0.013333	4	8787	8787;8792;8804;8818		211.39	49.491	1	4422200			1942	5089	1256	1256	2409;2410;2411;2412	2409					0.0635034058598194
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7792053222656	2	485.782025	969.549496	0.62815	0.00030514	-0.79803	-0.00038767	-0.16988	-8.2526E-05	485.78151392619833	72.687	1.0955	72.406	72.062	73.157	-0.28124					67	26	4	0	0	0	0.013333	3	8828	8804;8816;8828		211.39	58.353	1	4615300			1943	5089	1256	1256	2413;2414;2415	2415					0.0635034058598194
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7788391113281	2	485.782025	969.549496	0.2445	0.00011877	-0.5289	-0.00025693	-0.2844	-0.00013815	485.7816379615813	72.379	1.1541	72.389	71.953	73.107	0.0097733					63	28	3	0	0	0	0.012289	4	8726	8721;8726;8739;8751		227.71	64.164	1	4768500			1944	5089	1256	1256	2416;2417;2418;2419	2417					0.0635034058598194
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.776611328125	2	485.782025	969.549496	-0.089775	-4.3611E-05	-0.10366	-5.0358E-05	-0.19344	-9.3969E-05	485.78180854357225	72.669	0.94015	72.392	72.07	73.01	-0.2769					44	21	3	0	0	0	0.17822	2	8512	8512;8523		93.195	13.483	1	1063100			1945	5089	1256	1256	2420;2421	2420					0.0635034058598194
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.77777099609375	2	485.782025	969.549496	0.1237	6.0092E-05	-0.037894	-1.8408E-05	0.085809	4.1684E-05	485.781732973585	72.627	0.63974	72.362	72.084	72.724	-0.26479					42	14	4	0	0	0	0.067814	2	8538	8527;8538		122.18	42.463	1	1023900			1946	5089	1256	1256	2422;2423	2423					0.0635034058598194
ALLEQVNAL	9	Unmodified	_ALLEQVNAL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7706604003906	2	485.782025	969.549496	-0.24634	-0.00011967	-0.16063	-7.8033E-05	-0.40698	-0.0001977	485.78178131330674	72.522	0.84442	72.324	71.992	72.836	-0.1981					40	19	3	0	0	0	0.03849	2	8489	8489;8494		134.81	33.21	1	950750			1947	5089	1256	1256	2424;2425	2424					0.0635034058598194
ALLERGYSL	9	Unmodified	_ALLERGYSL_					0	0	0		ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.287353515625	2	511.287474	1020.5604	-0.49844	-0.00025485	0.10117	5.1726E-05	-0.39728	-0.00020312	511.28745369185856	56.297	0.50103	56.297	56.07	56.571	0					42	13	4	0	0	0	0.30449	1	6281	6281		75.043	8.614	1	2306900			1948	16731	1257	1257	2426	2426					0.05093742960275449
ALLERGYSL	9	Unmodified	_ALLERGYSL_					0	0	0		ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2871398925781	2	511.287474	1020.5604	-0.32949	-0.00016846	0.37089	0.00018963	0.041399	2.1167E-05	511.28752074650004	56.41	0.63515	56.253	55.972	56.608	-0.15655					61	15	5	0	0	0	0.1158	1	6098	6098		107.01	19.253	1	2138100			1949	16731	1257	1257	2427	2427					0.05093742960275449
ALLERGYSL	9	Unmodified	_ALLERGYSL_					0	0	0		ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2870788574219	2	511.287474	1020.5604	0.10289	5.2609E-05	-0.012688	-6.4871E-06	0.090207	4.6122E-05	511.28732784993247	56.489	0.58373	56.273	55.998	56.582	-0.21607					53	14	5	0	0	0	0.062622	2	6108	6108;6120		124.08	15.993	1	2168100			1950	16731	1257	1257	2428;2429	2428					0.05093742960275449
ALLERGYSL	9	Unmodified	_ALLERGYSL_					0	0	0		ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2878723144531	2	511.287474	1020.5604	-0.12444	-6.3627E-05	-0.041045	-2.0986E-05	-0.16549	-8.4613E-05	511.28731985209373	56.513	0.63173	56.288	56.029	56.661	-0.2248					56	15	4	0	0	0	0.16638	2	6097	6097;6113		95.815	10.9	1	2107300			1951	16731	1257	1257	2430;2431	2430					0.05093742960275449
ALLESSLRQA	10	Unmodified	_ALLESSLRQA_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.310546875	2	544.308938	1086.60332	-0.75828	-0.00041274	2.7381	0.0014903	1.9798	0.0010776	544.3115856694523	48.822	0.87121	48.822	48.378	49.249	0					41	24	3	0	0	0	0.18296	1	5009	5009		123.21	43.496	1	3068100			1952	3023	1258	1258	2432	2432					0.06348513017701407
ALLESSLRQA	10	Unmodified	_ALLESSLRQA_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.3099975585938	2	544.308938	1086.60332	-1.4211	-0.00077354	2.4139	0.0013139	0.99273	0.00054035	544.309627154856	48.712	0.85789	48.778	48.339	49.197	0.066795					48	23	4	0	0	0	0.090646	1	4928	4928		138.06	24.651	1	2979600			1953	3023	1258	1258	2433	2433					0.06348513017701407
ALLETNPYL	9	Unmodified	_ALLETNPYL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2822875976562	2	517.281857	1032.54916	-0.049747	-2.5733E-05	0.018607	9.6251E-06	-0.03114	-1.6108E-05	517.2817237292329	75.013	0.87396	74.754	74.451	75.325	-0.25887					47	21	3	0	0	0	0.067814	1	9151	9151		122.18	31.806	1	1469600			1954	2607	1259	1259	2434	2434					0.034189208661246084
ALLETNPYL	9	Unmodified	_ALLETNPYL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2810668945312	2	517.281857	1032.54916	0.017179	8.8866E-06	0.51879	0.00026836	0.53597	0.00027725	517.2816461786106	75.061	0.90271	74.786	74.479	75.381	-0.27573					57	21	4	0	0	0	0.021872	3	8859	8841;8859;8872		148.04	79.256	1	3553400			1955	2607	1259	1259	2435;2436;2437	2436					0.034189208661246084
ALLETNPYL	9	Unmodified	_ALLETNPYL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2816772460938	2	517.281857	1032.54916	0.022305	1.1538E-05	0.56065	0.00029002	0.58296	0.00030155	517.281780759863	75.034	0.86784	74.771	74.446	75.314	-0.26326					54	19	4	0	0	0	0.013333	3	8867	8856;8867;8887		176.41	76.983	1	4044500			1956	2607	1259	1259	2438;2439;2440	2439					0.034189208661246084
ALLETNPYL	9	Unmodified	_ALLETNPYL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.281982421875	2	517.281857	1032.54916	0.46542	0.00024076	-0.024677	-1.2765E-05	0.44075	0.00022799	517.2814382179446	74.91	0.83332	74.727	74.393	75.227	-0.18279					60	19	4	0	0	0	0.013887	3	8841	8819;8830;8841		180.93	84.736	1	3378800			1957	2607	1259	1259	2441;2442;2443	2443					0.034189208661246084
ALLETNPYL	9	Unmodified	_ALLETNPYL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.281857	1032.54916	-0.75255	-0.00038928	0.69148	0.00035769	-0.061073	-3.1592E-05	517.2820831076575	74.806	0.84894	74.817	74.439	75.288	0.010376	0.045756	0.00034323	NaN	176.41	63	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1653200			1958	2607	1259	1259							0.034189208661246084
ALLFKALAD	9	Unmodified	_ALLFKALAD_					0	0	0		nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7307434082031	2	481.289485	960.564418	-0.41632	-0.00020037	-3.0966	-0.0014903	-3.5129	-0.0016907	481.2877613832161	31.222	0.94924	31.222	30.92	31.869	0					35	22	2	0	0	0	0.024	1	2155	2155		45.952	22.909	1	159950			1959	7397	1260	1260	2444	2444					0.08255832453983203
ALLFPGVPE	9	Unmodified	_ALLFPGVPE_					0	0	0			REV__ENST00000549000.1_1_12:49960498-49961833:-|nuORF	REV__ENST00000549000.1_1_12:49960498-49961833:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7896423339844	2	471.768386	941.522219	-0.24825	-0.00011712	-0.21113	-9.9603E-05	-0.45937	-0.00021672	471.7681800727748	48.192	0.1675	48.039	47.924	48.091	-0.15301					6	4	2	0	0	0	0.024357	1	4868	4868		44.531	3.7529	1	103640	+		1960	34875	1261	1261	2445	2445					0.04911857045613033
ALLFVVLKI	9	Unmodified	_ALLFVVLKI_					0	0	0			REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF	REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.29248046875	2	508.349346	1014.68414	-0.18783	-9.5483E-05	1.2436	0.00063219	1.0558	0.00053671	508.8528618535474	50.478	0.29856	50.559	50.377	50.676	0.08099					11	8	2	0	0	0	0.024541	1	5236	5236		20.482	5.8177	1	176280	+		1961	34776	1262	1262	2446	2446					0.17738445798556768
ALLGDLTKA	9	Unmodified	_ALLGDLTKA_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000423641.1_1_10:86150999-86151317:+|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2718200683594	2	451.271293	900.528032	0.26665	0.00012033	-0.12848	-5.7978E-05	0.13817	6.2354E-05	451.2711302292258	56.816	1.0075	56.614	56.092	57.1	-0.20209					57	26	3	0	0	0	0.12914	1	6175	6175		104.06	29.802	1	1851700			1962	18095;2694	1263	1263	2447	2447					0.07378955557271638
ALLGDLTKA	9	Unmodified	_ALLGDLTKA_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000423641.1_1_10:86150999-86151317:+|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2718200683594	2	451.271293	900.528032	0.32681	0.00014748	-0.14994	-6.7663E-05	0.17687	7.9818E-05	451.2710921798711	56.887	0.72376	56.662	56.347	57.07	-0.2248					43	18	3	0	0	0	0.15366	1	6157	6157		98.629	21.855	1	1328600			1963	18095;2694	1263	1263	2448	2448					0.07378955557271638
ALLGEIVRA	9	Unmodified	_ALLGEIVRA_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.2925109863281	2	471.292559	940.570566	-0.0094754	-4.4657E-06	0.21215	9.9983E-05	0.20267	9.5517E-05	471.29249947090216	61.076	0.75586	60.87	60.504	61.259	-0.20599					49	18	4	0	0	0	0.19099	1	6824	6824		90.37	16.115	1	1351400			1964	2689	1264	1264	2449	2449					0.0979035068551184
ALLGEIVRA	9	Unmodified	_ALLGEIVRA_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.2926330566406	2	471.292559	940.570566	-0.76982	-0.00036281	0.82161	0.00038722	0.051789	2.4408E-05	471.2927770803955	60.909	0.76362	60.733	60.483	61.246	-0.1761					46	18	3	0	0	0	0.26966	1	6805	6805		79.713	2.9384	1	1293200			1965	2689	1264	1264	2450	2450					0.0979035068551184
ALLGEIVRA	9	Unmodified	_ALLGEIVRA_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.292559	940.570566	-0.040369	-1.9025E-05	3.9858	0.0018785	3.9455	0.0018595	471.2924571325246	60.82	0.78803	60.82	60.546	61.334	0	-0.010204	0.0030417	NaN	90.37	50	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	935670			1966	2689	1264	1264							0.0979035068551184
ALLGEIVRA	9	Unmodified	_ALLGEIVRA_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.292559	940.570566	0.0058361	2.7505E-06	4.1257	0.0019444	4.1315	0.0019472	471.29184710327655	61.108	1.0577	60.894	60.567	61.625	-0.21339	0.06459	0.0031736	NaN	90.37	55	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944930			1967	2689	1264	1264							0.0979035068551184
ALLGEIVRA	9	Unmodified	_ALLGEIVRA_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.292559	940.570566	-1.0293	-0.0004851	0.96172	0.00045325	-0.067566	-3.1843E-05	471.29287121938074	61.085	0.76188	60.832	60.584	61.346	-0.25373	0.0017688	0.00019126	NaN	90.37	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1196600			1968	2689	1264	1264							0.0979035068551184
ALLGFVTDL	9	Unmodified	_ALLGFVTDL_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7737121582031	2	474.773668	947.532783	1.1535	0.00054764	-1.3124	-0.00062307	-0.15888	-7.5433E-05	474.77297582327463	99.198	1.0987	99.198	98.647	99.746	0					64	24	3	0	0	0	0.80658	1	12719	12719		38.806	1.647	1	2194500			1969	18052	1265	1265	2451	2451					0.056918397000458754
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2682800292969	2	428.268553	854.522553	-0.097446	-4.1733E-05	-0.38876	-0.0001665	-0.48621	-0.00020823	428.268627427022	84.418	1.1212	84.418	84.084	85.206	0					93	26	6	0	0	0	0.013308	4	10564	10554;10564;10575;10588		170.31	50.757	1	4032400			1970	6918	1266	1266	2452;2453;2454;2455	2453					0.0894727676546836
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.26873779296875	2	428.268553	854.522553	-0.73453	-0.00031458	0.27474	0.00011766	-0.45979	-0.00019691	428.2688876138354	84.408	0.99952	84.335	84.048	85.047	-0.072769					80	23	6	0	0	0	0.013308	4	10525	10525;10533;10547;10561		170.31	50.757	1	3789800			1971	6918	1266	1266	2456;2457;2458;2459	2456					0.0894727676546836
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2687072753906	2	428.268553	854.522553	-0.13939	-5.9698E-05	-0.4003	-0.00017144	-0.53969	-0.00023113	428.2686073513788	84.374	1.3378	84.401	84.032	85.37	0.02655					112	31	6	0	0	0	0.016588	4	10480	10470;10480;10492;10504		153.88	48.616	1	7134100			1972	6918	1266	1266	2460;2461;2462;2463	2461					0.0894727676546836
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2688293457031	2	428.268553	854.522553	0.90072	0.00038575	-1.4541	-0.00062272	-0.55333	-0.00023697	428.26823405714725	84.398	1.2318	84.195	83.608	84.84	-0.20329					88	28	6	0	0	0	0.033883	3	10210	10185;10197;10210		138.48	39.618	1	1811300			1973	6918	1266	1266	2464;2465;2466	2466					0.0894727676546836
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2685241699219	2	428.268553	854.522553	0.99419	0.00042578	-0.79877	-0.00034209	0.19542	8.3692E-05	428.26809439978416	84.329	1.2182	84.171	83.844	85.063	-0.15869					54	28	3	0	0	0	0.016588	3	10204	10194;10204;10218		153.88	57.837	1	2403800			1974	6918	1266	1266	2467;2468;2469	2468					0.0894727676546836
ALLGGLVNV	9	Unmodified	_ALLGGLVNV_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.268798828125	2	428.268553	854.522553	0.80225	0.00034358	-0.65432	-0.00028022	0.14793	6.3354E-05	428.2681470857693	84.354	1.2237	84.216	83.889	85.113	-0.13789					62	28	3	0	0	0	0.013308	3	10171	10171;10183;10196		170.31	65.045	1	3000300			1975	6918	1266	1266	2470;2471;2472	2470					0.0894727676546836
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.3027648925781	2	482.302927	962.591301	-0.37106	-0.00017896	0.35039	0.000169	-0.020667	-9.9676E-06	482.3029158677943	73.238	0.66433	73.238	72.952	73.617	0					43	17	4	0	0	0	0.29104	2	8934	8934;8944		76.847	28.931	1	2441300			1976	935	1267	1267	2473;2474	2473					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.3033447265625	2	482.302927	962.591301	-0.23622	-0.00011393	0.20788	0.00010026	-0.028336	-1.3667E-05	482.3028619331649	73.58	0.56053	73.309	73.05	73.611	-0.27126					36	14	3	0	0	0	0.088511	1	8950	8950		114.59	54.292	1	2201300			1977	935	1267	1267	2475	2475					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.3031005859375	2	482.302927	962.591301	-0.41568	-0.00020048	0.41991	0.00020252	0.0042294	2.0399E-06	482.3029518387299	73.291	0.61356	73.301	72.944	73.558	0.0096512					41	15	4	0	0	0	0.14199	1	8873	8873		101.21	51.187	1	2205500			1978	935	1267	1267	2476	2476					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.302734375	2	482.302927	962.591301	0.1133	5.4646E-05	-0.28927	-0.00013952	-0.17597	-8.4869E-05	482.302618396712	73.441	0.72037	73.164	72.884	73.605	-0.27689					48	17	4	0	0	0	0.021668	2	8622	8622;8633		148.21	62.847	1	2332400			1979	935	1267	1267	2477;2478	2477					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.30255126953125	2	482.302927	962.591301	-0.50229	-0.00024226	0.31762	0.00015319	-0.18467	-8.9067E-05	482.3029211933268	73.431	0.75476	73.166	72.852	73.607	-0.26479					45	18	3	0	0	0	0.040175	2	8643	8643;8655		133.47	48.11	1	2021200			1980	935	1267	1267	2479;2480	2479					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.3030700683594	2	482.302927	962.591301	-0.13815	-6.6628E-05	-0.018226	-8.7902E-06	-0.15637	-7.5418E-05	482.302770994698	73.194	0.84267	73.003	72.718	73.561	-0.19027					54	20	4	0	0	0	0.062871	3	8586	8586;8599;8609		123.99	35.346	1	2064600			1981	935	1267	1267	2481;2482;2483	2481					0.10850941065177722
ALLGYVAADL	10	Unmodified	_ALLGYVAADL_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.28594970703125	2	503.2844	1004.55425	-0.75135	-0.00037814	0.42129	0.00021203	-0.33006	-0.00016611	503.2843323356794	83.491	0.94669	83.491	83.138	84.084	0					48	21	3	0	0	0	0.62679	1	10440	10440		73.975	2.0973	1	1195600	+		1982	28450	1268	1268	2484	2484					0.0521522472874949
ALLGYVAADL	10	Unmodified	_ALLGYVAADL_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.2844	1004.55425	-0.18963	-9.5438E-05	-0.38903	-0.00019579	-0.57866	-0.00029123	503.2839461467663	83.534	0.94329	83.444	83.043	83.987	-0.090454	0.08266	-0.00023686	NaN	73.975	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1027200	+		1983	28450	1268	1268							0.0521522472874949
ALLGYVAADL	10	Unmodified	_ALLGYVAADL_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.2844	1004.55425	-0.73313	-0.00036897	0.33138	0.00016678	-0.40175	-0.0002022	503.28431657850354	83.398	0.85789	83.425	83.13	83.988	0.026558	0.063695	0.00048828	NaN	73.975	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011000	+		1984	28450	1268	1268							0.0521522472874949
ALLGYVAADL	10	Unmodified	_ALLGYVAADL_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.2844	1004.55425	0.68464	0.00034457	-0.76419	-0.0003846	-0.07955	-4.0036E-05	503.28390700137646	83.554	0.84941	83.342	82.962	83.812	-0.21159	-0.018939	-0.00061448	NaN	73.975	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161810	+		1985	28450	1268	1268							0.0521522472874949
ALLGYVAADL	10	Unmodified	_ALLGYVAADL_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.2844	1004.55425	0.39403	0.00019831	-0.39667	-0.00019964	-0.0026422	-1.3298E-06	503.2841259069534	83.343	0.84351	83.174	82.99	83.834	-0.16916	-0.18724	-0.00024455	NaN	73.975	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163520	+		1986	28450	1268	1268							0.0521522472874949
ALLGYVAADL	10	Unmodified	_ALLGYVAADL_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.2844	1004.55425	-0.19083	-9.604E-05	-0.12185	-6.1327E-05	-0.31268	-0.00015737	503.284246675277	83.43	0.67636	83.291	82.952	83.629	-0.1386	-0.07009	3.2078E-05	NaN	73.975	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153510	+		1987	28450	1268	1268							0.0521522472874949
ALLIAMLVW	9	Unmodified	_ALLIAMLVW_					0	0	0			REV__ENSG00000172568|ENST00000312349|FNDC9	REV__ENSG00000172568|ENST00000312349|FNDC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.802490234375	2	515.311906	1028.60926	-0.55176	-0.00028433	-2.9013	-0.0014951	-3.4531	-0.0017794	515.3104115947266	60.468	0.89544	60.255	59.748	60.643	-0.21339					41	23	2	0	0	0	0.024475	1	6852	6852		21.702	8.2483	1	1479600	+		1988	26687	1269	1269	2485	2485					0.09609939995652894
ALLIECDKV	9	Unmodified	_ALLIECDKV_					0	0	0			REV__ENST00000439473.5_1_7:102895289-102898071:-|nuORF	REV__ENST00000439473.5_1_7:102895289-102898071:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.77264404296875	2	502.27826	1002.54197	-1.3673	-0.00068675	3.082	0.001548	1.7148	0.00086129	502.2799408077577	55.993	0.78939	55.777	55.489	56.278	-0.21551					32	20	2	0	0	0	0.024487	1	5983	5983		11.511	0	1	309290	+		1989	32510	1270	1270	2486	2486					0.0407986499405979
ALLILDGLD	9	Unmodified	_ALLILDGLD_					0	0	0		ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;nc|ENSG00000167984|Q7RTR2-3|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7767333984375	2	471.778951	941.543348	0.20288	9.5713E-05	-3.847	-0.0018149	-3.6441	-0.0017192	471.77912624191043	79.708	0.29707	79.708	79.489	79.786	0					9	6	2	0	0	0	0.024487	1	9863	9863		31.955	14.59	1	31566			1990	7761	1271	1271	2487	2487					0.07023822354460663
ALLILGVSP	9	Unmodified	_ALLILGVSP_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7880859375	2	441.786579	881.558604	0.19884	8.7846E-05	2.7852	0.0012305	2.9841	0.0013183	441.78771995741124	42.661	0.83592	42.661	41.987	42.823	0					57	23	5	0	0	0	0.64155	1	3950	3950		50.025	7.5501	1	11253000			1991	2521	1272	1272	2488	2488					0.11308733942325944
ALLILGVSP	9	Unmodified	_ALLILGVSP_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7882385253906	2	441.786579	881.558604	0.5436	0.00024016	2.4419	0.0010788	2.9855	0.001319	441.7875773536456	43.102	2.1581	43.133	42.939	45.097	0.030827					145	60	5	0	0	0	0.75282	1	3964	3964		42.474	8.9589	1	24747000			1992	2521	1272	1272	2489	2489					0.11308733942325944
ALLILGVSP	9	Unmodified	_ALLILGVSP_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7885437011719	2	441.786579	881.558604	-0.34704	-0.00015332	3.3795	0.001493	3.0324	0.0013397	441.78799059467195	43.095	2.3661	42.982	42.775	45.141	-0.11253					131	63	5	0	0	0	0.75282	1	3922	3922		42.474	7.2737	1	16234000			1993	2521	1272	1272	2490	2490					0.11308733942325944
ALLILGVSP	9	Unmodified	_ALLILGVSP_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.78759765625	2	441.786579	881.558604	-0.5192	-0.00022937	3.5225	0.0015562	3.0033	0.0013268	441.7880387330216	43.278	2.1204	43.041	42.8	44.92	-0.23736					124	56	5	0	0	0	0.64155	1	3928	3928		50.025	7.5501	1	15366000			1994	2521	1272	1272	2491	2491					0.11308733942325944
ALLILGVSP	9	Unmodified	_ALLILGVSP_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	441.786579	881.558604	-0.18492	-8.1696E-05	3.2582	0.0014394	3.0733	0.0013577	441.7879440468571	43.189	2.7104	43.049	42.846	45.557	-0.13929	0.004561	8.08E-05	NaN	50.025	162	77	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23376000			1995	2521	1272	1272							0.11308733942325944
ALLIVHTK	8	Unmodified	_ALLIVHTK_					0	0	0			REV__ENSG00000157064|ENST00000287713|NMNAT2	REV__ENSG00000157064|ENST00000287713|NMNAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2350158691406	2	447.792195	893.569838	-0.35413	-0.00015858	0.40889	0.0001831	0.054761	2.4522E-05	447.7923172086455	37.615	0.49025	37.615	37.379	37.869	0					23	13	2	0	0	0	0.027866	1	3108	3108		10.866	0	1	528720	+		1996	25108	1273	1273	2492	2492					0.11879556036456052
ALLIVMLEL	9	Unmodified	_ALLIVMLEL_					0	0	0			REV__ENSG00000179626|ENST00000641569|OR6C4	REV__ENSG00000179626|ENST00000641569|OR6C4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7823486328125	2	507.817021	1013.61949	-0.23619	-0.00011994	3.1427	0.0015959	2.9066	0.001476	507.81844635195404	42.31	0.36932	42.178	42.017	42.386	-0.13219					19	10	2	0	0	0	0.024183	1	3892	3892		60.294	0	1	133670	+		1997	27283	1274	1274	2493	2493					0.11322502930238443
ALLKCGLAGP	10	Unmodified	_ALLKCGLAGP_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7738342285156	2	471.775688	941.536823	0.13041	6.1526E-05	2.629	0.0012403	2.7594	0.0013018	471.7763434246648	22.964	0.76636	22.964	22.479	23.245	0					19	16	2	0	0	0	0.03519	1	843	843		24.203	0	1	61163	+		1998	26514	1275	1275	2494	2494					0.06371605922106482
ALLKCGLAGP	10	Unmodified	_ALLKCGLAGP_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77392578125	2	471.775688	941.536823	0.064341	3.0354E-05	4.0478	0.0019096	4.1121	0.00194	471.777231573713	22.956	0.55316	22.895	22.473	23.026	-0.060862					15	11	2	0	0	0	0.03519	1	838	838		24.203	0	1	61335	+		1999	26514	1275	1275	2495	2495					0.06371605922106482
ALLKIEGVYA	10	Unmodified	_ALLKIEGVYA_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8211669921875	2	538.82115	1075.62775	-1.013	-0.0005458	0.79834	0.00043016	-0.21462	-0.00011564	538.8214959276675	64.635	1.0467	64.635	64.311	65.358	0					58	28	3	0	0	0	0.54901	3	7628	7602;7613;7628		82.75	31.415	1	8369400			2000	9175	1276	1276	2496;2497;2498	2498					0.09295773171243127
ALLKIEGVYA	10	Unmodified	_ALLKIEGVYA_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8212280273438	2	538.82115	1075.62775	-1.8223	-0.00098192	1.3853	0.00074645	-0.43701	-0.00023547	538.8219038255965	64.929	0.93279	64.666	64.341	65.273	-0.2626					43	24	2	0	0	0	0.34774	2	7625	7625;7639		104.06	41.949	1	10789000			2001	9175	1276	1276	2499;2500	2499					0.09295773171243127
ALLKIEGVYA	10	Unmodified	_ALLKIEGVYA_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8213500976562	2	538.82115	1075.62775	-1.1179	-0.00060234	0.75971	0.00040935	-0.35818	-0.000193	538.8215500622114	64.652	1.0282	64.697	64.335	65.363	0.045502					45	27	2	0	0	0	0.52765	3	7529	7529;7541;7554		85.161	28.44	1	10055000			2002	9175	1276	1276	2501;2502;2503	2501					0.09295773171243127
ALLKIEGVYA	10	Unmodified	_ALLKIEGVYA_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8211059570312	2	538.82115	1075.62775	-0.81783	-0.00044067	0.99863	0.00053808	0.1808	9.7417E-05	538.8213314744714	64.908	0.64014	64.673	64.452	65.092	-0.2345					38	15	4	0	0	0	0.59716	1	7397	7397		77.318	23.966	1	1435500			2003	9175	1276	1276	2504	2504					0.09295773171243127
ALLKIEGVYA	10	Unmodified	_ALLKIEGVYA_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.820556640625	2	538.82115	1075.62775	-1.1698	-0.00063032	1.0848	0.00058449	-0.085042	-4.5822E-05	538.8215568166793	64.947	0.68409	64.745	64.42	65.104	-0.20254					42	16	4	0	0	0	0.66532	1	7405	7405		69.628	28.849	1	1571800			2004	9175	1276	1276	2505	2505					0.09295773171243127
ALLKIEGVYA	10	Unmodified	_ALLKIEGVYA_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8212280273438	2	538.82115	1075.62775	-1.3374	-0.00072062	1.1722	0.00063161	-0.1652	-8.9013E-05	538.8214479651506	64.94	0.79829	64.684	64.386	65.184	-0.25562					43	19	4	0	0	0	0.61732	1	7386	7386		75.043	10.836	1	1920300			2005	9175	1276	1276	2506	2506					0.09295773171243127
ALLKQIQEA	9	Unmodified	_ALLKQIQEA_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.3030700683594	2	507.303124	1012.5917	-0.096781	-4.9097E-05	-0.67185	-0.00034083	-0.76863	-0.00038993	507.30265781463515	46.778	0.4886	46.778	46.551	47.04	0					23	12	2	0	0	0	0.12602	1	4667	4667		104.75	14.377	1	2781900			2006	3132	1277	1277	2507	2507					0.08590315994376851
ALLKQIQEA	9	Unmodified	_ALLKQIQEA_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	507.303124	1012.5917	-0.22245	-0.00011285	0.02179	1.1054E-05	-0.20066	-0.0001018	507.30288573513593	46.764	0.9682	46.815	46.203	47.171	0.051395					46	26	2	0	0	0	0.067814	1	4596	4596		122.18	15.493	1	2612100			2007	3132	1277	1277	2508	2508					0.08590315994376851
ALLKSVISGR	10	Unmodified	_ALLKSVISGR_					0	0	0			REV__nc|ENSG00000141127|O60256-4|PRPSAP2	REV__nc|ENSG00000141127|O60256-4|PRPSAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.803466796875	2	522.332216	1042.64988	-0.042894	-2.2405E-05	-1.4925	-0.0007796	-1.5354	-0.00080201	522.3314101420219	39.985	0.27035	39.76	39.658	39.928	-0.225					10	6	2	0	0	0	0.03519	1	3406	3406		31.53	0	1	82727	+		2008	24066	1278	1278	2509	2509					0.13025997639647358
ALLKTSAIEV	10	Unmodified	_ALLKTSAIEV_					0	0	0		nc|ENSG00000025434|Q13133-3|NR1H3;ENSG00000025434|ENST00000441012|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2696533203125	2	522.818607	1043.62266	-0.34948	-0.00018271	-1.605	-0.00083911	-1.9544	-0.0010218	522.8179330526511	41.669	0.18951	41.546	41.491	41.68	-0.12299					6	4	2	0	0	0	0.03519	1	3703	3703		29.15	3.6994	1	200450			2009	987	1279	1279	2510	2510					0.1025946930860755
ALLKYIETL	9	Unmodified	_ALLKYIETL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.323974609375	2	532.323525	1062.6325	-0.60956	-0.00032449	0.54121	0.0002881	-0.068355	-3.6387E-05	532.3235940824994	72.611	1.1451	72.611	72.292	73.438	0					61	28	3	0	0	0	0.067814	1	8850	8850		122.18	0	1	1037300			2010	4938	1280	1280	2511	2511					0.10368657313983931
ALLKYIETL	9	Unmodified	_ALLKYIETL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.3244018554688	2	532.323525	1062.6325	-0.068526	-3.6478E-05	0.032441	1.7269E-05	-0.036085	-1.9209E-05	532.3233472391006	72.999	1.2691	72.718	72.18	73.449	-0.28124					71	31	3	0	0	0	0.091713	1	8848	8848		113.41	0	1	1236800			2011	4938	1280	1280	2512	2512					0.10368657313983931
ALLKYIETL	9	Unmodified	_ALLKYIETL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.3237915039062	2	532.323525	1062.6325	-0.0215	-1.1445E-05	0.0088162	4.6931E-06	-0.012684	-6.752E-06	532.3232519624765	72.662	1.1475	72.672	72.371	73.519	0.0097733					64	28	3	0	0	0	0.03849	1	8784	8784		134.81	0	1	1072600			2012	4938	1280	1280	2513	2513					0.10368657313983931
ALLKYIETL	9	Unmodified	_ALLKYIETL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.323525	1062.6325	-0.35338	-0.00018811	-0.14076	-7.493E-05	-0.49414	-0.00026304	532.32289124526	72.853	0.72588	72.576	72.325	73.051	-0.2769	-0.065155	-0.00039908	NaN	134.81	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165770			2013	4938	1280	1280							0.10368657313983931
ALLKYIETL	9	Unmodified	_ALLKYIETL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.323525	1062.6325	-0.54519	-0.00029022	0.038799	2.0654E-05	-0.50639	-0.00026956	532.3233753867285	72.894	0.63206	72.629	72.385	73.017	-0.26479	-0.011829	-0.00020791	NaN	134.81	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296990			2014	4938	1280	1280							0.10368657313983931
ALLLCYYY	8	Unmodified	_ALLLCYYY_					0	0	0		TFPI2|p.R51C|1|0.2|ENSG00000105825|chr7:93890257-93890257|G/A|missense_variant	TFPI2|p.R51C|1|0.2|ENSG00000105825|chr7:93890257-93890257|G/A|missense_variant	TFPI2|p.R51C|1|0.2|ENSG00000105825|chr7:93890257-93890257|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.286865234375	2	511.256797	1020.49904	-0.12641	-6.463E-05	0.29097	0.00014876	0.16456	8.4131E-05	511.25701605817676	58.276	0.41051	58.367	58.188	58.598	0.091221					14	10	2	0	0	0	0.027866	1	6527	6527		33.493	0	1	244480			2015	38064	1281	1281	2514	2514					-0.010389050633762054
ALLLDGIIV	9	Unmodified	_ALLLDGIIV_					0	0	0		ENSG00000198870|ENST00000371957|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7995910644531	2	463.799686	925.584819	-0.49726	-0.00023063	0.90569	0.00042006	0.40843	0.00018943	463.7999310295488	103.06	1.0484	103.06	102.77	103.82	0					55	25	3	0	0	0	0.97516	1	13220	13220		25.45	1.2474	1	813880			2016	10231	1282	1282	2515	2515					0.11905003113815837
ALLLGALLC	9	Unmodified	_ALLLGALLC_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.7264099121094	2	443.775157	885.53576	0.2299	0.00010202	3.6972	0.0016407	3.9271	0.0017428	443.7766371114026	39.52	0.93202	39.294	38.806	39.738	-0.2257					46	24	3	0	0	0	0.024541	1	3269	3269		14.664	5.8418	1	995840			2017	4809	1283	1283	2516	2516					0.08841391553198719
ALLLGALLC	9	Unmodified	_ALLLGALLC_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.775157	885.53576	-0.49393	-0.00021919	4.0334	0.0017899	3.5395	0.0015707	443.77683134537983	39.542	0.62518	39.319	39.073	39.698	-0.22311	0.036713	7.8852E-05	NaN	14.664	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675150			2018	4809	1283	1283							0.08841391553198719
ALLLGELGP	9	Unmodified	_ALLLGELGP_					0	0	0		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;ENST00000484848.5_1_10:102255105-102258991:-|nuORF	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7688293457031	2	441.768386	881.522219	0.14561	6.4327E-05	-1.2505	-0.00055245	-1.1049	-0.00048812	441.76790990667746	102.78	1.6063	102.79	102.46	104.06	0.0054169					106	40	5	0	0	0	0.75282	1	13142	13142		42.474	3.6683	1	27080000			2019	1571	1284	1284	2517	2517					0.07671857045613706
ALLLGPKLL	9	Unmodified	_ALLLGPKLL_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1;nc|ENSG00000101307|O00241-2|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2896423339844	2	469.325871	936.637189	1.3402	0.00062899	-1.3142	-0.00061677	0.026048	1.2225E-05	469.3251221003107	73.891	0.55775	73.891	73.741	74.298	0					17	12	2	0	0	0	0.024466	1	9018	9018		33.516	0	1	368120			2020	2308	1285	1285	2518	2518					0.16633586247417043
ALLLGPKLL	9	Unmodified	_ALLLGPKLL_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1;nc|ENSG00000101307|O00241-2|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.28997802734375	2	469.325871	936.637189	0.12837	6.0247E-05	-0.3314	-0.00015554	-0.20303	-9.529E-05	469.32565702011834	73.925	0.68555	73.935	73.753	74.439	0.0096512					21	15	2	0	0	0	0.024535	1	8948	8948		33.516	0	1	355850			2021	2308	1285	1285	2519	2519					0.16633586247417043
ALLLGWVLL	9	Unmodified	_ALLLGWVLL_					0	0	0			REV__nc|ENSG00000204290|Q9UIR0-2|BTNL2	REV__nc|ENSG00000204290|Q9UIR0-2|BTNL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.32354736328125	2	499.325871	996.637189	-0.32988	-0.00016472	-3.5132	-0.0017543	-3.8431	-0.001919	499.32405481101443	75.973	1.1005	75.973	75.659	76.759	0					54	27	2	0	0	0	0.65391	1	9330	9330		49.211	3.2385	1	6794000	+		2022	28585	1286	1286	2520	2520					0.1387358624741637
ALLLHEND	8	Unmodified	_ALLLHEND_					0	0	0		nc|ENSG00000108423|Q9UJT1-6|TUBD1;nc|ENSG00000108423|Q9UJT1-5|TUBD1;nc|ENSG00000108423|Q9UJT1-2|TUBD1;ENSG00000108423|ENST00000325752|TUBD1	nc|ENSG00000108423|Q9UJT1-6|TUBD1	nc|ENSG00000108423|Q9UJT1-6|TUBD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.23114013671875	2	462.742899	923.471246	-0.97155	-0.00044958	0.96494	0.00044652	-0.006616	-3.0615E-06	462.74314641913793	35.425	0.69173	35.403	35.159	35.851	-0.021767					24	17	3	0	0	0	0.027866	1	2705	2705		19.36	0	1	252820			2023	2896	1287	1287	2521	2521					0.006449080007541852
ALLLLPCGL	9	Unmodified	_ALLLLPCGL_					0	0	0		nc|ENSG00000197847|A6NK97|SLC22A20P;nc|ENSG00000197847|A6NK97-2|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7664489746094	2	456.782982	911.55141	0.13203	6.0308E-05	-3.2649	-0.0014914	-3.1329	-0.001431	456.7815165128841	43.842	0.21628	43.873	43.737	43.953	0.030823					8	5	2	0	0	0	0.024389	1	4091	4091		21.702	0	1	88009			2024	18643	1288	1288	2522	2522					0.09209678070249083
ALLLPDLDL	9	Unmodified	_ALLLPDLDL_					0	0	0			REV__nc|ENSG00000112294|P51649-2|ALDH5A1	REV__nc|ENSG00000112294|P51649-2|ALDH5A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.2799987792969	2	491.794601	981.574648	0.28247	0.00013892	1.8863	0.00092765	2.1687	0.0010666	491.79534515116353	72.008	1.5667	71.801	71.007	72.574	-0.20613					45	37	2	0	0	0	0.024457	1	8441	8441		29.15	0	1	89422	+		2025	36570	1289	1289	2523	2523					0.08312395388554705
ALLLSTLLD	9	Unmodified	_ALLLSTLLD_					0	0	0			REV__ENST00000326677.9_1_20:47895690-47897050:+|nuORF	REV__ENST00000326677.9_1_20:47895690-47897050:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2771301269531	2	479.794601	957.574648	0.11865	5.693E-05	-1.5684	-0.00075253	-1.4498	-0.0006956	479.7927947567196	83.261	0.47339	83.122	82.781	83.255	-0.1386					17	10	3	0	0	0	0.024487	1	9990	9990		17.365	0	1	74649	+		2026	30407	1290	1290	2524	2524					0.09416395388586807
ALLLSVHTPK	10	Unmodified	_ALLLSVHTPK_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8375854492188	2	539.834591	1077.65463	-0.38699	-0.00020891	1.9724	0.0010648	1.5854	0.00085587	539.8355186512124	18.585	0.29603	18.454	18.253	18.549	-0.13147					7	5	2	0	0	0	0.03519	1	305	305		27.882	2.3082	1	16738			2027	3450	1291	1291	2525	2525					0.11890881782414908
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2916259765625	2	486.292225	970.569897	-0.13411	-6.5218E-05	-0.62542	-0.00030414	-0.75954	-0.00036936	486.2917794508345	94.264	1.9219	94.264	93.77	95.691	0					80	45	3	0	0	0	0.033448	1	12005	12005		138.83	21.922	1	1892000			2028	1023	1292	1292	2526	2526					0.08343511245811897
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.29144287109375	2	486.292225	970.569897	-0.29776	-0.0001448	-0.48933	-0.00023796	-0.78709	-0.00038276	486.29184106514526	94.201	2.1368	94.201	93.121	95.258	-0.00022888					83	50	3	0	0	0	0.01452	2	11958	11958;11971		186.09	52.276	1	1555500			2029	1023	1292	1292	2527;2528	2527					0.08343511245811897
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2917175292969	2	486.292225	970.569897	-0.9144	-0.00044467	0.17932	8.7202E-05	-0.73508	-0.00035747	486.292125161828	94.298	2.5614	94.304	93.096	95.657	0.0059814					95	60	4	0	0	0	0.14024	1	11942	11942		101.6	16.44	1	1690300			2030	1023	1292	1292	2529	2529					0.08343511245811897
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.2919616699219	2	486.292225	970.569897	-0.88191	-0.00042887	0.39893	0.000194	-0.48298	-0.00023487	486.29223679510443	94.111	2.1483	93.973	93.05	95.198	-0.13779					83	49	4	0	0	0	0.027092	2	11579	11579;11590		143.89	30.475	1	1267100			2031	1023	1292	1292	2530;2531	2530					0.08343511245811897
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.2911376953125	2	486.292225	970.569897	0.33656	0.00016366	-0.79079	-0.00038456	-0.45423	-0.00022089	486.2916970314467	94.156	1.7506	94.034	93.54	95.291	-0.12215					75	40	3	0	0	0	0.01452	3	11616	11592;11604;11616		201.49	65.468	1	1524800			2032	1023	1292	1292	2532;2533;2534	2534					0.08343511245811897
ALLNILSEV	9	Unmodified	_ALLNILSEV_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.291748046875	2	486.292225	970.569897	0.12664	6.1584E-05	-0.53008	-0.00025778	-0.40344	-0.00019619	486.29178913922516	94.196	1.4515	94.048	93.695	95.146	-0.14771					66	33	4	0	0	0	0.013094	3	11601	11577;11589;11601		181.81	63.297	1	1502400			2033	1023	1292	1292	2535;2536;2537	2537					0.08343511245811897
ALLNNIIEI	9	Unmodified	_ALLNNIIEI_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000151572|ENST00000392977|ANO4	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8061828613281	2	506.8055	1011.59645	0.27925	0.00014153	-0.36434	-0.00018465	-0.085087	-4.3123E-05	506.80529467421377	90.754	0.87602	90.766	90.238	91.114	0.011276					59	20	4	0	0	0	0.12602	1	11400	11400		104.75	13.97	1	1832300			2034	4536;4787;6211	1293	1293	2538	2538					0.0911120013714708
ALLNNIIEI	9	Unmodified	_ALLNNIIEI_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000151572|ENST00000392977|ANO4	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	506.8055	1011.59645	-1.5024	-0.00076141	1.2779	0.00064765	-0.22446	-0.00011376	506.80617118592744	90.729	0.91899	90.729	90.173	91.092	0	-0.010451	0.001079	NaN	104.75	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1727700			2035	4536;4787;6211	1293	1293							0.0911120013714708
ALLNNVIEV	9	Unmodified	_ALLNNVIEV_					0	0	0		ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	ENSG00000047617|ENST00000682330|ANO2	ENSG00000047617|ENST00000682330|ANO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7864685058594	2	492.78985	983.565146	-0.00079267	-3.9062E-07	-1.9261	-0.00094916	-1.9269	-0.00094955	492.7888222510482	78.522	0.79671	78.522	78.363	79.16	0					36	18	3	0	0	0	0.77768	1	9719	9719		40.778	0.20554	1	1417400			2036	1106	1294	1294	2539	2539					0.07270627103048355
ALLNNVIEV	9	Unmodified	_ALLNNVIEV_					0	0	0		ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	ENSG00000047617|ENST00000682330|ANO2	ENSG00000047617|ENST00000682330|ANO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7852783203125	2	492.78985	983.565146	0.20772	0.00010236	-2.1943	-0.0010813	-1.9866	-0.00097897	492.7886278688089	78.649	0.71095	78.457	78.298	79.009	-0.1921					33	16	3	0	0	0	0.77768	1	9714	9714		40.778	0.20554	1	1573000			2037	1106	1294	1294	2540	2540					0.07270627103048355
ALLNVELEL	9	Unmodified	_ALLNVELEL_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.29742431640625	2	507.297507	1012.58046	0.34523	0.00017514	-0.80713	-0.00040946	-0.4619	-0.00023432	507.29694028121264	91.372	1.0831	91.384	91.033	92.116	0.011276					62	25	4	0	0	0	0.021872	1	11492	11492		148.04	13.232	1	1557600			2038	4914	1295	1295	2541	2541					0.07467493900230693
ALLNVELEL	9	Unmodified	_ALLNVELEL_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.297507	1012.58046	-1.2858	-0.00065227	0.83556	0.00042388	-0.45021	-0.00022839	507.29784311269367	91.369	1.1286	91.369	91.011	92.139	0	0.065703	0.00085362	NaN	148.04	57	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1314700			2039	4914	1295	1295							0.07467493900230693
ALLNVELEL	9	Unmodified	_ALLNVELEL_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.297507	1012.58046	-0.43035	-0.00021832	-0.11778	-5.9749E-05	-0.54813	-0.00027806	507.29735825586374	91.326	1.0083	91.314	90.993	92.001	-0.012383	0.010192	-0.00011363	NaN	148.04	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370100			2040	4914	1295	1295							0.07467493900230693
ALLNVELEL	9	Unmodified	_ALLNVELEL_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.297507	1012.58046	-0.60817	-0.00030852	-0.012261	-6.2199E-06	-0.62043	-0.00031474	507.2979470433276	91.271	0.41938	91.148	90.994	91.413	-0.12341	-0.15596	-6.5746E-06	NaN	148.04	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103480			2041	4914	1295	1295							0.07467493900230693
ALLPIFFGA	9	Unmodified	_ALLPIFFGA_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.7811584472656	2	474.781296	947.54804	0.58749	0.00027893	-0.085015	-4.0364E-05	0.50248	0.00023857	474.7809978616146	103.13	0.76885	103	102.75	103.52	-0.12723					37	18	3	0	0	0	0.22343	3	12808	12808;12826;12838		85.909	33.61	1	1278500			2042	2305	1296	1296	2542;2543;2544	2542					0.07216751287899115
ALLPIFFGA	9	Unmodified	_ALLPIFFGA_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.78265380859375	2	474.781296	947.54804	-0.10406	-4.9405E-05	1.3659	0.00064849	1.2618	0.00059908	474.78131996467823	103.13	1.2907	103.01	102.23	103.52	-0.12783					68	30	4	0	0	0	0.14584	4	12824	12824;12834;12846;12858		100.36	37.382	1	1193500			2043	2305	1296	1296	2545;2546;2547;2548	2545					0.07216751287899115
ALLPIFFGA	9	Unmodified	_ALLPIFFGA_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.7814025878906	2	474.781296	947.54804	0.24147	0.00011465	0.22207	0.00010544	0.46355	0.00022008	474.7811487923108	103.23	0.79509	103.06	102.72	103.52	-0.17034					50	19	4	0	0	0	0.14584	3	12821	12812;12821;12837		100.36	37.382	1	1427900			2044	2305	1296	1296	2549;2550;2551	2550					0.07216751287899115
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7660217285156	2	449.765843	897.517133	0.39625	0.00017822	0.31817	0.0001431	0.71442	0.00032132	449.7656691810868	72.537	0.97849	72.537	72.131	73.109	0					60	23	4	0	0	0	0.13494	2	8820	8820;8829		102.77	20.468	1	1212300			2045	9400	1297	1297	2552;2553	2552					0.06427553183004875
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.76605224609375	2	449.765843	897.517133	0.75596	0.00034001	-0.10452	-4.7009E-05	0.65144	0.000293	449.76548410341707	72.877	1.0054	72.596	72.262	73.267	-0.28124					52	24	3	0	0	0	0.08613	2	8842	8842;8855		115.46	26.816	1	1292700			2046	9400	1297	1297	2554;2555	2554					0.06427553183004875
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7657165527344	2	449.765843	897.517133	0.60039	0.00027003	-0.05515	-2.4805E-05	0.54524	0.00024523	449.7655423932723	72.568	0.97142	72.578	72.21	73.181	0.0097733					53	23	3	0	0	0	0.028181	3	8757	8747;8757;8772		143.02	28.434	1	1677300			2047	9400	1297	1297	2556;2557;2558	2557					0.06427553183004875
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.765625	2	449.765843	897.517133	-0.48221	-0.00021688	0.86477	0.00038895	0.38256	0.00017206	449.7659991699329	72.66	1.1419	72.462	72.206	73.348	-0.1981					48	27	3	0	0	0	0.33245	1	8509	8509		71.296	5.4925	1	587450			2048	9400	1297	1297	2559	2559					0.06427553183004875
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	449.765843	897.517133	0.069735	3.1364E-05	0.49819	0.00022407	0.56793	0.00025543	449.76573851612363	72.881	0.72868	72.604	72.24	72.968	-0.2769	0.050803	0.00015804	NaN	143.02	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215360			2049	9400	1297	1297							0.06427553183004875
ALLPSSPTL	9	Unmodified	_ALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	449.765843	897.517133	-0.041453	-1.8644E-05	0.79456	0.00035737	0.75311	0.00033872	449.7658426985782	72.808	1.3506	72.543	72.256	73.607	-0.26479	-0.010344	0.00042464	NaN	143.02	48	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392440			2050	9400	1297	1297							0.06427553183004875
ALLPTLICD	9	Unmodified	_ALLPTLICD_					0	0	0		ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL;TAPBPL|p.E313K|1|0.07|ENSG00000139192|chr12:6458677-6458677|G/A|missense_variant	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7507019042969	2	479.767529	957.520504	-0.3586	-0.00017204	3.5872	0.001721	3.2286	0.001549	479.76908880684067	32.667	0.48026	32.679	32.413	32.893	0.011799					24	12	2	0	0	0	0.024325	1	2255	2255		40.573	0	1	1277900			2051	5312	1298	1298	2560	2560					0.04004479965351493
ALLPVDIFL	9	Unmodified	_ALLPVDIFL_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.80755615234375	2	500.807511	999.600469	0.10214	5.1154E-05	0.44599	0.00022336	0.54814	0.00027451	500.80740307328796	107.29	0.36915	107.29	107.1	107.47	0.0018387					24	9	3	0	0	0	0.40179	2	13690	13690;13702		65.803	12.452	1	288640			2052	7796	1299	1299	2561;2562	2561					0.10065289630847474
ALLPVVELF	9	Unmodified	_ALLPVVELF_					0	0	0			REV__ENST00000591239.1_1_19:10252595-10252844:-|nuORF	REV__ENST00000591239.1_1_19:10252595-10252844:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.80718994140625	2	500.807511	999.600469	0.26474	0.00013258	0.096188	4.8171E-05	0.36093	0.00018076	500.80720596841684	107.19	0.46753	107.04	106.83	107.3	-0.15772					33	17	3	0	0	0	0.67308	1	13297	13297		47.916	1.9636	1	264810	+		2053	35719	1300	1300	2563	2563					0.10065289630858842
ALLPYFVYV	9	Unmodified	_ALLPYFVYV_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L;ENST00000524976.5_1_11:62538888-62549806:+|nuORF	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8073120117188	2	542.807511	1083.60047	-0.67683	-0.00036739	0.69158	0.0003754	0.014756	8.0096E-06	542.8078001604058	101.61	1.0906	101.61	100.99	102.08	0					55	24	4	0	0	0	0.22343	2	13009	12998;13009		85.909	37.994	1	909900			2054	6923	1301	1301	2564;2565	2565					0.06201289630848805
ALLPYFVYV	9	Unmodified	_ALLPYFVYV_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L;ENST00000524976.5_1_11:62538888-62549806:+|nuORF	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8078002929688	2	542.807511	1083.60047	-0.71912	-0.00039035	0.7724	0.00041926	0.053275	2.8918E-05	542.8077900525424	101.54	0.98822	101.54	101.21	102.2	0.0090256					62	22	4	0	0	0	0.32257	2	12961	12961;12974		72.62	8.1045	1	926120			2055	6923	1301	1301	2566;2567	2566					0.06201289630848805
ALLPYFVYV	9	Unmodified	_ALLPYFVYV_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L;ENST00000524976.5_1_11:62538888-62549806:+|nuORF	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.8078002929688	2	542.807511	1083.60047	-0.47236	-0.0002564	0.6282	0.00034099	0.15584	8.4589E-05	542.8077558384797	101.64	1.52	101.64	100.85	102.37	-0.0054398					69	34	4	0	0	0	0.32257	2	12932	12932;12942		72.62	30.145	1	970610			2056	6923	1301	1301	2568;2569	2568					0.06201289630848805
ALLPYFVYV	9	Unmodified	_ALLPYFVYV_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L;ENST00000524976.5_1_11:62538888-62549806:+|nuORF	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8087158203125	2	542.807511	1083.60047	0.13642	7.4048E-05	-0.1469	-7.974E-05	-0.010487	-5.6923E-06	542.8072165562595	101.4	0.54655	101.26	101	101.54	-0.13156					19	11	2	0	0	0	0.93795	1	12589	12589		29.842	0.69198	1	187420			2057	6923	1301	1301	2570	2570					0.06201289630848805
ALLQEIVNI	9	Unmodified	_ALLQEIVNI_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8053283691406	2	506.8055	1011.59645	-0.24986	-0.00012663	0.016506	8.3651E-06	-0.23335	-0.00011827	506.8052912073692	89.324	1.1131	89.324	89.02	90.133	0					61	26	4	0	0	0	0.086035	2	11278	11266;11278		115.49	16.596	1	1221100			2058	5749	1302	1302	2571;2572	2572					0.0911120013714708
ALLQEIVNI	9	Unmodified	_ALLQEIVNI_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.80523681640625	2	506.8055	1011.59645	0.34369	0.00017418	-0.6984	-0.00035395	-0.35471	-0.00017977	506.80498873953235	89.323	0.92433	89.302	88.95	89.874	-0.021645					58	20	4	0	0	0	0.053401	2	11242	11233;11242		127.46	26.718	1	1077300			2059	5749	1302	1302	2573;2574	2574					0.0911120013714708
ALLQEIVNI	9	Unmodified	_ALLQEIVNI_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.80499267578125	2	506.8055	1011.59645	0.19333	9.7979E-05	-0.57631	-0.00029208	-0.38298	-0.0001941	506.8050414263252	89.394	0.87292	89.409	89.133	90.006	0.015907					61	20	4	0	0	0	0.094442	1	11201	11201		112.41	5.4034	1	1264500			2060	5749	1302	1302	2575	2575					0.0911120013714708
ALLQEIVNI	9	Unmodified	_ALLQEIVNI_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.8055	1011.59645	-0.65664	-0.00033279	0.59932	0.00030374	-0.057317	-2.9049E-05	506.8055072027172	89.437	0.84109	89.274	88.932	89.774	-0.1626	-0.016181	0.0010112	NaN	127.46	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113060			2061	5749	1302	1302							0.0911120013714708
ALLQEIVNI	9	Unmodified	_ALLQEIVNI_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.8055	1011.59645	-0.41574	-0.0002107	0.26594	0.00013478	-0.1498	-7.5918E-05	506.8054038701096	89.306	0.93204	89.179	88.914	89.846	-0.12774	-0.11153	0.00067332	NaN	127.46	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109400			2062	5749	1302	1302							0.0911120013714708
ALLQEIVNI	9	Unmodified	_ALLQEIVNI_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.8055	1011.59645	0.0075282	3.8153E-06	-1.0038	-0.00050875	-0.99631	-0.00050493	506.80516100686333	89.39	0.80324	89.253	88.946	89.749	-0.13761	-0.037544	-0.00061374	NaN	127.46	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98505			2063	5749	1302	1302							0.0911120013714708
ALLQEQSQN	9	Unmodified	_ALLQEQSQN_					0	0	0		CON__Q8VED5	CON__Q8VED5	CON__Q8VED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7610473632812	2	515.76182	1029.50909	-1.0446	-0.00053878	1.3411	0.00069168	0.29644	0.00015289	515.7624134590654	35.124	0.7212	35.102	34.828	35.549	-0.021763					46	18	3	0	0	0	0.67687	1	2675	2675		47.657	1.6851	1	2285400		+	2064	568	1303	1303	2576	2576					-0.004486258044153146
ALLQEVYKL	9	Unmodified	_ALLQEVYKL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8209838867188	2	538.82115	1075.62775	-1.8223	-0.00098192	1.3853	0.00074645	-0.43701	-0.00023547	538.8219038255965	64.929	0.93279	64.666	64.341	65.273	-0.2626					43	24	2	0	0	0	0.42604	1	7615	7615		64.207	4.089	1	10789000			2065	1175	1304	1304	2577	2577					0.0929577317122039
ALLQHLLTV	9	Unmodified	_ALLQHLLTV_					0	0	0			REV__ENST00000522002.5_1_8:134060928-134061024:-|nuORF	REV__ENST00000522002.5_1_8:134060928-134061024:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7507629394531	2	504.316035	1006.61752	-0.40533	-0.00020442	-0.66589	-0.00033582	-1.0712	-0.00054023	504.3155784345653	34.241	0.65781	34.241	33.932	34.59	0					29	16	2	0	0	0	0.024436	1	2508	2508		38.806	6.8513	1	127260	+		2066	34331	1305	1305	2578	2578					0.11447210236644878
ALLQHLLTV	9	Unmodified	_ALLQHLLTV_					0	0	0			REV__ENST00000522002.5_1_8:134060928-134061024:-|nuORF	REV__ENST00000522002.5_1_8:134060928-134061024:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7510681152344	2	504.316035	1006.61752	-0.19958	-0.00010065	-0.5321	-0.00026835	-0.73168	-0.000369	504.3157000899779	34.072	0.77625	34.068	33.676	34.452	-0.0045624					32	19	2	0	0	0	0.024381	1	2468	2468		37.159	5.2042	1	133370	+		2067	34331	1305	1305	2579	2579					0.11447210236644878
ALLQHLLTV	9	Unmodified	_ALLQHLLTV_					0	0	0			REV__ENST00000522002.5_1_8:134060928-134061024:-|nuORF	REV__ENST00000522002.5_1_8:134060928-134061024:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.75115966796875	2	504.316035	1006.61752	-0.54762	-0.00027618	-0.89816	-0.00045296	-1.4458	-0.00072913	504.31582151571433	34.071	0.67625	34.122	33.765	34.441	0.050255					36	16	3	0	0	0	0.024436	1	2411	2411		30.504	8.5438	1	167990	+		2068	34331	1305	1305	2580	2580					0.11447210236644878
ALLQKLQQL	9	Unmodified	_ALLQKLQQL_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.279541015625	2	527.834591	1053.65463	0.00079658	4.2046E-07	-1.015	-0.00053578	-1.0142	-0.00053536	527.8340490826453	68.853	0.74365	68.868	68.644	69.388	0.015129					60	19	5	0	0	0	0.024325	1	8198	8198		50.025	4.0523	1	1106200			2069	7556	1306	1306	2581	2581					0.12994881782424272
ALLQKLQQL	9	Unmodified	_ALLQKLQQL_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.834591	1053.65463	0.067914	3.5848E-05	-1.3285	-0.00070124	-1.2606	-0.0006654	527.8339282635503	68.949	0.20055	68.706	68.548	68.748	-0.24277	-0.075392	-0.00049348	NaN	31.955	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46689			2070	7556	1306	1306							0.12994881782424272
ALLQLGAQTV	10	Unmodified	_ALLQLGAQTV_					0	0	0			REV__nc|ENSG00000168003|P08195|SLC3A2	REV__nc|ENSG00000168003|P08195|SLC3A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.30316162109375	2	507.303124	1012.5917	-0.19385	-9.8341E-05	-0.41069	-0.00020834	-0.60454	-0.00030668	507.3027951218582	46.921	0.53866	46.768	46.514	47.052	-0.15301					24	13	2	0	0	0	0.026265	1	4666	4666		158.07	5.0388	1	2619800	+		2071	19351	1307	1307	2582	2582					0.08590315994365483
ALLQRLEAL	9	Unmodified	_ALLQRLEAL_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.8189086914062	2	513.818941	1025.62333	-0.64984	-0.0003339	0.44161	0.00022691	-0.20823	-0.00010699	513.8190478264713	68.606	0.85434	68.344	68.021	68.875	-0.26166					54	20	4	0	0	0	0.12602	2	7938	7924;7938		104.75	16.992	1	1463000			2072	2243	1308	1308	2583;2584	2584					0.11154308748336916
ALLQRLEAL	9	Unmodified	_ALLQRLEAL_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.8189086914062	2	513.818941	1025.62333	0.34178	0.00017561	-0.49933	-0.00025657	-0.15756	-8.0957E-05	513.818652180225	68.565	0.75674	68.322	68.033	68.79	-0.24277					48	18	4	0	0	0	0.2508	2	7945	7933;7945		82.241	5.4664	1	1471700			2073	2243	1308	1308	2585;2586	2586					0.11154308748336916
ALLQRLEAL	9	Unmodified	_ALLQRLEAL_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.81787109375	2	513.818941	1025.62333	0.34069	0.00017506	-0.56911	-0.00029242	-0.22841	-0.00011736	513.8186014065188	68.595	0.68272	68.364	68.077	68.76	-0.23048					46	16	4	0	0	0	0.17822	1	7916	7916		93.195	5.4412	1	1359600			2074	2243	1308	1308	2587	2587					0.11154308748336916
ALLQSDVRL	9	Unmodified	_ALLQSDVRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.80035400390625	2	507.800749	1013.58694	0.33384	0.00016952	-1.4898	-0.00075652	-1.156	-0.00058699	507.799918072656	58.769	1.4002	58.769	58.159	59.559	0					92	37	3	0	0	0	0.016542	2	6674	6674;6700		154.12	47.111	1	15031000			2075	18548	1309	1309	2588;2589	2588					0.08069431851606623
ALLQSDVRL	9	Unmodified	_ALLQSDVRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7999572753906	2	507.800749	1013.58694	1.0917	0.00055438	-2.2811	-0.0011584	-1.1894	-0.00060399	507.7995402208805	59.012	1.4978	58.825	58.206	59.704	-0.18705					97	40	3	0	0	0	0.077175	3	6677	6667;6677;6695		118.74	35.781	1	12901000			2076	18548	1309	1309	2590;2591;2592	2591					0.08069431851606623
ALLQSDVRL	9	Unmodified	_ALLQSDVRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7999267578125	2	507.800749	1013.58694	0.35108	0.00017828	-1.5128	-0.00076819	-1.1617	-0.00058991	507.7998924169021	58.637	1.5448	58.728	58.152	59.697	0.091217					95	41	3	0	0	0	0.03666	3	6580	6568;6580;6599		136.27	48.572	1	11710000			2077	18548	1309	1309	2593;2594;2595	2594					0.08069431851606623
ALLQSDVRL	9	Unmodified	_ALLQSDVRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.800749	1013.58694	0.11098	5.6356E-05	-0.58793	-0.00029855	-0.47695	-0.0002422	507.80036065637086	58.895	1.0497	58.713	58.145	59.194	-0.18134	-0.050736	0.00022321	NaN	154.12	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1929600			2078	18548	1309	1309							0.08069431851606623
ALLQSDVRL	9	Unmodified	_ALLQSDVRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.800749	1013.58694	0.43318	0.00021997	-0.73538	-0.00037343	-0.3022	-0.00015346	507.80035861252196	59.036	1.0428	58.795	58.381	59.424	-0.24165	0.030478	7.3457E-05	NaN	154.12	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2412800			2079	18548	1309	1309							0.08069431851606623
ALLRGGPR	8	Unmodified	_ALLRGGPR_					0	0	0			REV__nc|ENSG00000143384|Q07820-2|MCL1	REV__nc|ENSG00000143384|Q07820-2|MCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.2639465332031	2	420.264136	838.51372	0.015218	6.3955E-06	0.39698	0.00016684	0.4122	0.00017323	420.2641638906677	42.362	0.50436	42.132	41.865	42.37	-0.23029					34	13	3	0	0	0	0.81662	1	3799	3799		57.811	5.5121	1	1225500	+		2080	24241	1310	1310	2596	2596					0.0880034791965727
ALLRLLATN	9	Unmodified	_ALLRLLATN_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2579650878906	2	492.813659	983.612765	-0.19088	-9.4067E-05	-0.10165	-5.0093E-05	-0.29253	-0.00014416	492.8134768205706	53.629	0.96735	53.432	53.201	54.168	-0.19739					61	28	4	0	0	0	0.024466	1	5719	5719		31.53	3.6476	1	4620900			2081	2903	1311	1311	2597	2597					0.12030326093895383
ALLRLLLPYPP	11	Unmodified	_ALLRLLLPYPP_					0	0	0		ENST00000490508.5_1_2:85582731-85618082:+|nuORF;ENST00000429764.5_1_2:85582731-85584092:+|nuORF;ENST00000409344.7_1_2:85582731-85583748:+|nuORF	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.5928039550781	3	422.604186	1264.79073	0.1702	7.1928E-05	2.7575	0.0011653	2.9277	0.0012373	422.60545398791936	50.101	0.4078	49.821	49.584	49.992	-0.27977					17	10	2	0	0	0	0.024813	1	5079	5079		14.694	10.081	1	140620			2082	15433	1312	1312	2598	2598					0.16892576293093953
ALLRWRVFIYW	11	Unmodified	_ALLRWRVFIYW_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8058776855469	3	508.294235	1521.86087	-0.54117	-0.00027508	1.8651	0.00094804	1.324	0.00067296	508.62898753208333	20.692	0.44649	20.469	20.216	20.663	-0.22344					15	8	3	0	0	0	0.024845	1	553	553		10.104	0	1	11610			2083	1386	1313	1313	2599	2599					0.12081874681553018
ALLSEVIQL	9	Unmodified	_ALLSEVIQL_					0	0	0		nc|ENSG00000046653|Q13491-2|GPM6B;nc|ENSG00000046653|Q13491|GPM6B;DCUN1D4-GPM6B|1|fusion;nc|ENSG00000046653|Q13491-3|GPM6B;DCUN1D4-GPM6B|2|fusion;ENSG00000046653|ENST00000316715|GPM6B;DCUN1D4-GPM6B|4|fusion;DCUN1D4-GPM6B|3|fusion	nc|ENSG00000046653|Q13491-2|GPM6B	nc|ENSG00000046653|Q13491-2|GPM6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.3000183105469	2	493.30005	984.585547	-0.64118	-0.00031629	0.70947	0.00034998	0.068293	3.3689E-05	493.3003016871022	90.216	0.94747	90.216	89.856	90.804	0					59	22	5	0	0	0	0.016871	3	11403	11394;11403;11415		152.47	27.876	1	1387100			2084	625	1314	1314	2600;2601;2602	2601					0.09263797762855575
ALLSEVIQL	9	Unmodified	_ALLSEVIQL_					0	0	0		nc|ENSG00000046653|Q13491-2|GPM6B;nc|ENSG00000046653|Q13491|GPM6B;DCUN1D4-GPM6B|1|fusion;nc|ENSG00000046653|Q13491-3|GPM6B;DCUN1D4-GPM6B|2|fusion;ENSG00000046653|ENST00000316715|GPM6B;DCUN1D4-GPM6B|4|fusion;DCUN1D4-GPM6B|3|fusion	nc|ENSG00000046653|Q13491-2|GPM6B	nc|ENSG00000046653|Q13491-2|GPM6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.29962158203125	2	493.30005	984.585547	0.063391	3.1271E-05	0.20063	9.897E-05	0.26402	0.00013024	493.3000171560621	90.227	1.0271	90.211	89.837	90.865	-0.016708					59	24	4	0	0	0	0.057894	3	11368	11359;11368;11381		125.81	26.439	1	1571900			2085	625	1314	1314	2603;2604;2605	2604					0.09263797762855575
ALLSEVIQL	9	Unmodified	_ALLSEVIQL_					0	0	0		nc|ENSG00000046653|Q13491-2|GPM6B;nc|ENSG00000046653|Q13491|GPM6B;DCUN1D4-GPM6B|1|fusion;nc|ENSG00000046653|Q13491-3|GPM6B;DCUN1D4-GPM6B|2|fusion;ENSG00000046653|ENST00000316715|GPM6B;DCUN1D4-GPM6B|4|fusion;DCUN1D4-GPM6B|3|fusion	nc|ENSG00000046653|Q13491-2|GPM6B	nc|ENSG00000046653|Q13491-2|GPM6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2998962402344	2	493.30005	984.585547	0.15068	7.433E-05	-0.12047	-5.9426E-05	0.030212	1.4904E-05	493.29987991944324	90.243	0.94511	90.257	89.924	90.869	0.013443					63	22	5	0	0	0	0.057894	1	11324	11324		125.81	35.037	1	1517200			2086	625	1314	1314	2606	2606					0.09263797762855575
ALLSEVIQL	9	Unmodified	_ALLSEVIQL_					0	0	0		nc|ENSG00000046653|Q13491-2|GPM6B;nc|ENSG00000046653|Q13491|GPM6B;DCUN1D4-GPM6B|1|fusion;nc|ENSG00000046653|Q13491-3|GPM6B;DCUN1D4-GPM6B|2|fusion;ENSG00000046653|ENST00000316715|GPM6B;DCUN1D4-GPM6B|4|fusion;DCUN1D4-GPM6B|3|fusion	nc|ENSG00000046653|Q13491-2|GPM6B	nc|ENSG00000046653|Q13491-2|GPM6B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.30005	984.585547	-1.2907	-0.00063672	1.4801	0.00073013	0.18936	9.3413E-05	493.3006111557765	90.196	0.73662	90.041	89.738	90.475	-0.1552	-0.091824	0.001062	NaN	152.47	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485860			2087	625	1314	1314							0.09263797762855575
ALLSEVIQL	9	Unmodified	_ALLSEVIQL_					0	0	0		nc|ENSG00000046653|Q13491-2|GPM6B;nc|ENSG00000046653|Q13491|GPM6B;DCUN1D4-GPM6B|1|fusion;nc|ENSG00000046653|Q13491-3|GPM6B;DCUN1D4-GPM6B|2|fusion;ENSG00000046653|ENST00000316715|GPM6B;DCUN1D4-GPM6B|4|fusion;DCUN1D4-GPM6B|3|fusion	nc|ENSG00000046653|Q13491-2|GPM6B	nc|ENSG00000046653|Q13491-2|GPM6B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.30005	984.585547	-0.492	-0.0002427	0.72352	0.00035691	0.23153	0.00011421	493.30025279015325	90.156	0.74041	90.031	89.719	90.459	-0.12512	-0.10189	0.00031557	NaN	152.47	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430140			2088	625	1314	1314							0.09263797762855575
ALLSEVIQL	9	Unmodified	_ALLSEVIQL_					0	0	0		nc|ENSG00000046653|Q13491-2|GPM6B;nc|ENSG00000046653|Q13491|GPM6B;DCUN1D4-GPM6B|1|fusion;nc|ENSG00000046653|Q13491-3|GPM6B;DCUN1D4-GPM6B|2|fusion;ENSG00000046653|ENST00000316715|GPM6B;DCUN1D4-GPM6B|4|fusion;DCUN1D4-GPM6B|3|fusion	nc|ENSG00000046653|Q13491-2|GPM6B	nc|ENSG00000046653|Q13491-2|GPM6B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.30005	984.585547	0.30341	0.00014967	-0.008347	-4.1176E-06	0.29506	0.00014556	493.299811562737	90.178	0.7867	90.04	89.749	90.535	-0.13824	-0.092317	-0.00040649	NaN	152.47	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449820			2089	625	1314	1314							0.09263797762855575
ALLSPTNSLI	10	Unmodified	_ALLSPTNSLI_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.8046264648438	2	514.802957	1027.59136	-0.69338	-0.00035695	0.53531	0.00027558	-0.15807	-8.1377E-05	514.8034373478815	58.055	0.61286	58.146	57.835	58.448	0.091217					44	16	3	0	0	0	0.45418	1	6496	6496		93.143	0	1	7336000	+		2090	28270	1315	1315	2607	2607					0.0786689627452688
ALLSRFDL	8	Unmodified	_ALLSRFDL_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000125885|Q9UJA3-3|MCM8;nc|ENSG00000125885|Q9UJA3-2|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000125885|Q9UJA3-2|MCM8	ENSG00000166508|ENST00000303887|MCM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7246398925781	2	467.77146	933.528367	0.45802	0.00021425	-0.082446	-3.8566E-05	0.37558	0.00017568	467.77121830341406	46.713	0.62671	46.764	46.579	47.206	0.051399					30	16	4	0	0	0	0.027866	1	4609	4609		38.806	6.8513	1	387750			2091	7574;4161	1316	1316	2608	2608					0.058943752771256186
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8168334960938	2	521.816399	1041.61824	-1.1974	-0.00062484	1.4402	0.0007515	0.24274	0.00012667	521.8173670224853	64.635	0.91329	64.635	64.347	65.26	0					83	24	5	0	0	0	0.094442	4	7615	7603;7615;7627;7639		112.41	11.158	1	8817100			2092	4169	1317	1317	2609;2610;2611;2612	2610					0.09910004885705348
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8163452148438	2	521.816399	1041.61824	-1.4748	-0.00076958	1.5424	0.00080486	0.067606	3.5278E-05	521.817377216374	64.929	0.92853	64.666	64.379	65.307	-0.2626					81	24	4	0	0	0	0.1158	2	7619	7610;7619		107.01	5.4068	1	10600000			2093	4169	1317	1317	2613;2614	2614					0.09910004885705348
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8165283203125	2	521.816399	1041.61824	-0.67651	-0.00035301	0.85683	0.00044711	0.18033	9.4097E-05	521.8170059460965	64.752	0.94876	64.792	64.442	65.391	0.039429					77	25	5	0	0	0	0.062622	4	7536	7526;7536;7548;7560		124.08	11.669	1	9637600			2094	4169	1317	1317	2615;2616;2617;2618	2616					0.09910004885705348
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.8161010742188	2	521.816399	1041.61824	-0.73699	-0.00038457	0.40981	0.00021384	-0.32718	-0.00017073	521.8165205606402	64.901	1.0417	64.667	64.295	65.337	-0.2345					65	25	4	0	0	0	0.062622	1	7388	7388		124.08	11.669	1	4091600			2095	4169	1317	1317	2619	2619					0.09910004885705348
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.81591796875	2	521.816399	1041.61824	-0.58564	-0.0003056	0.28704	0.00014978	-0.2986	-0.00015581	521.8164175239041	64.88	1.0914	64.678	64.341	65.432	-0.20254					70	26	5	0	0	0	0.030064	3	7387	7387;7396;7409		141.52	17.44	1	4005500			2096	4169	1317	1317	2620;2621;2622	2620					0.09910004885705348
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.8162841796875	2	521.816399	1041.61824	-0.40902	-0.00021343	-0.16338	-8.5253E-05	-0.57239	-0.00029868	521.8161970592594	64.914	0.83889	64.658	64.386	65.225	-0.25562					52	20	4	0	0	0	0.094442	3	7389	7375;7389;7410		112.41	13.036	1	4320100			2097	4169	1317	1317	2623;2624;2625	2624					0.09910004885705348
ALLSRPALTL	10	Unmodified	_ALLSRPALTL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2796020507812	2	527.834591	1053.65463	0.01055	5.5687E-06	-1.1284	-0.00059563	-1.1179	-0.00059006	527.8339055416037	69.074	0.60428	68.781	68.634	69.238	-0.29267					50	15	4	0	0	0	0.03519	1	8276	8276		32.812	0	1	1049300			2098	3998	1318	1318	2626	2626					0.12994881782401535
ALLSRSRQL	9	Unmodified	_ALLSRSRQL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2957153320312	2	522.31964	1042.62473	-0.87805	-0.00045862	0.38956	0.00020347	-0.48849	-0.00025515	522.3197361408296	33.913	0.54982	33.913	33.7	34.25	0					20	13	2	0	0	0	0.024447	1	2469	2469		40.778	0	1	157330			2099	1583	1319	1319	2627	2627					0.1051194283706991
ALLSSGASVL	10	Unmodified	_ALLSSGASVL_					0	0	0			REV__ENST00000257468.11_2_9:86322621-86322708:-|nuORF	REV__ENST00000257468.11_2_9:86322621-86322708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2667541503906	2	459.26875	916.522947	-0.46174	-0.00021206	1.013	0.00046525	0.5513	0.00025319	459.2691290493807	48.112	0.69985	48.015	47.557	48.257	-0.097553					46	18	3	0	0	0	1.0271	1	4789	4789		42.396	1.618	1	4953900	+		2100	29563	1320	1320	2628	2628					0.06134651694674176
ALLSSVLNK	9	Unmodified	_ALLSSVLNK_					0	0	0		ENSG00000254469|ENST00000679412|XNDC1N;ENST00000528560.2_1_11:71615063-71627290:-|nuORF;ENST00000528511.6_2_11:71595487-71639632:-|nuORF	ENSG00000254469|ENST00000679412|XNDC1N	ENSG00000254469|ENST00000679412|XNDC1N	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.7916259765625	2	472.792392	943.570232	0.33101	0.0001565	-0.70778	-0.00033463	-0.37677	-0.00017814	472.7920197722938	18.492	0.84065	18.288	18.064	18.904	-0.20371					44	16	5	0	0	0	0.33245	1	295	295		71.296	4.8664	1	1830100			2101	10878	1321	1321	2629	2629					0.0961893096566655
ALLSTTHE	8	Unmodified	_ALLSTTHE_					0	0	0		nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF	nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.21185302734375	2	436.229625	870.444697	0.7556	0.00032961	-0.40969	-0.00017872	0.34591	0.0001509	436.2293485538093	43.111	0.72994	43.142	42.646	43.376	0.030827					23	19	2	0	0	0	0.027866	1	3925	3925		38.806	14.287	1	155530			2102	9202	1322	1322	2630	2630					0.004292191094236841
ALLSTTHE	8	Unmodified	_ALLSTTHE_					0	0	0		nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF	nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.229625	870.444697	-0.15642	-6.8236E-05	0.82278	0.00035892	0.66635	0.00029068	436.2297219436549	43.231	0.47476	43.091	42.846	43.321	-0.13929	-0.025543	0.00062783	NaN	38.806	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152600			2103	9202	1322	1322							0.004292191094236841
ALLSVLGALY	10	Unmodified	_ALLSVLGALY_					0	0	0			REV__OR5AR1|p.V157L|1|0.46|ENSG00000172459|chr11:56664154-56664154|G/T|missense_variant	REV__OR5AR1|p.V157L|1|0.46|ENSG00000172459|chr11:56664154-56664154|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.3105163574219	2	510.310418	1018.60628	-0.48022	-0.00024506	0.070294	3.5872E-05	-0.40992	-0.00020919	510.3104219802773	77.088	2.2371	76.926	76.488	78.725	-0.16196					162	52	6	0	0	0	0.21215	1	9130	9130		119.56	4.0628	1	53962000	+		2104	37319	1323	1323	2631	2631					0.09772388142528143
ALLSVLLYAT	10	Unmodified	_ALLSVLLYAT_					0	0	0		ENSG00000179820|ENST00000391770|MYADM;ENST00000474610.1_1_2:33952107-33952842:-|nuORF	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2676391601562	2	532.323525	1062.6325	-0.23361	-0.00012436	0.049377	2.6285E-05	-0.18424	-9.8073E-05	532.323401818405	71.129	1.4139	71.14	70.465	71.879	0.010735					67	35	3	0	0	0	0.03519	1	8610	8610		54.776	0	1	1876900			2105	8926	1324	1324	2632	2632					0.10368657313983931
ALLSVSKT	8	Unmodified	_ALLSVSKT_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.1825256347656	2	409.752736	817.490919	0.12339	5.056E-05	-0.019185	-7.861E-06	0.10421	4.2699E-05	409.752561529703	25.471	0.41721	25.3	25.039	25.457	-0.17078					13	9	2	0	0	0	0.027866	1	1171	1171		14.865	0	1	78551			2106	3446	1325	1325	2633	2633					0.07487284011529027
ALLSWEIYL	9	Unmodified	_ALLSWEIYL_					0	0	0		ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3054809570312	2	554.307875	1106.6012	-0.70233	-0.00038931	-3.585	-0.0019872	-4.2873	-0.0023765	554.3057907641179	75.8	1.4395	75.556	75.153	76.593	-0.24455					96	37	5	0	0	0	0.4855	1	9282	9282		60.294	1.512	1	9835000			2107	5542	1326	1326	2634	2634					0.0521608427989122
ALLTGRTK	8	Unmodified	_ALLTGRTK_					0	0	0			REV__CON__Q28194	REV__CON__Q28194	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7376708984375	2	430.271627	858.528701	-0.999	-0.00042984	1.5043	0.00064727	0.50533	0.00021743	430.2722503096315	25.057	0.46722	25.023	24.771	25.238	-0.034395					12	10	2	0	0	0	0.027866	1	1136	1136		21.96	0	1	22253	+	+	2108	19572	1327	1327	2635	2635					0.09377794996987632
ALLTKSSN	8	Unmodified	_ALLTKSSN_					0	0	0			REV__nc|ENSG00000134759|Q6IA86-4|ELP2;REV__ENST00000541294.1_1_18:33739943-33744659:+|nuORF	REV__nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.23931884765625	2	417.239993	832.465432	-0.34005	-0.00014188	-1.5712	-0.00065558	-1.9113	-0.00079746	417.2392593971876	87.93	0.84181	87.751	87.405	88.247	-0.17875					38	20	2	0	0	0	1.0284	1	10714	10714		32.812	3.6629	1	2391200	+		2109	23478;34768	1328	1328	2636	2636					0.04249809489101608
ALLTKSSN	8	Unmodified	_ALLTKSSN_					0	0	0			REV__nc|ENSG00000134759|Q6IA86-4|ELP2;REV__ENST00000541294.1_1_18:33739943-33744659:+|nuORF	REV__nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.2394714355469	2	417.239993	832.465432	0.27597	0.00011514	-2.2001	-0.00091797	-1.9241	-0.00080283	417.238994678704	87.954	1.3047	87.817	87.388	88.693	-0.13613					49	31	2	0	0	0	0.94504	2	10735	10722;10735		45.972	8.8131	1	2230800	+		2110	23478;34768	1328	1328	2637;2638	2638					0.04249809489101608
ALLTLRKQN	9	Unmodified	_ALLTLRKQN_					0	0	0			REV__ENSG00000068366|ENST00000672401|ACSL4	REV__ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8059692382812	2	528.82984	1055.64513	-0.98198	-0.0005193	4.1922	0.002217	3.2102	0.0016977	528.8319055017248	49.977	0.82561	49.977	49.62	50.445	0					49	23	3	0	0	0	0.024427	1	5149	5149		26.693	4.733	1	1421700	+		2111	20376	1329	1329	2639	2639					0.11953113496906553
ALLTYLEQV	9	Unmodified	_ALLTYLEQV_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2972412109375	2	525.297507	1048.58046	0.11911	6.2566E-05	-1.2125	-0.00063694	-1.0934	-0.00057437	525.2969559337012	85.766	1.5676	85.766	85.123	86.69	0					103	36	5	0	0	0	0.0085264	4	10754	10742;10754;10766;10778		273.38	75.783	1	9302400			2112	1883	1330	1330	2640;2641;2642;2643	2641					0.05811493900228015
ALLTYLEQV	9	Unmodified	_ALLTYLEQV_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2979736328125	2	525.297507	1048.58046	-0.45637	-0.00023973	-0.82371	-0.00043269	-1.2801	-0.00067242	525.2971389538403	85.721	1.8983	85.663	85.063	86.961	-0.05761					114	44	5	0	0	0	0.013293	5	10703	10703;10713;10725;10737;10750		273.38	91.577	1	8799500			2113	1883	1330	1330	2644;2645;2646;2647;2648	2644					0.05811493900228015
ALLTYLEQV	9	Unmodified	_ALLTYLEQV_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.298095703125	2	525.297507	1048.58046	-0.72014	-0.00037829	-0.60043	-0.00031541	-1.3206	-0.00069369	525.2973294951536	85.675	1.6036	85.699	85.408	87.012	0.023666					109	37	5	0	0	0	0.015064	4	10655	10655;10666;10678;10690		275.71	99.298	1	8849400			2114	1883	1330	1330	2649;2650;2651;2652	2649					0.05811493900228015
ALLVAVSIGR	10	Unmodified	_ALLVAVSIGR_					0	0	0			REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF;REV__ENSG00000221955|ENST00000469902|SLC12A8	REV__ENSG00000221955|ENST00000469902|SLC12A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3046569824219	2	499.821484	997.628415	-0.93127	-0.00046547	0.090353	4.516E-05	-0.84092	-0.00042031	499.82193157423865	59.932	0.48875	60.01	59.791	60.28	0.078888					36	12	4	0	0	0	0.03519	1	6795	6795		29.15	0	1	585100	+		2115	33230;28842	1331	1331	2653	2653					0.1295061261095043
ALLVKPAIRVR	11	Unmodified	_ALLVKPAIRVR_					0	0	0			REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF	REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	618.421142578125	2	618.419157	1234.82376	-0.8395	-0.00051916	4.043	0.0025003	3.2035	0.0019811	618.4213959506743	102.86	0.41629	102.74	102.5	102.91	-0.12783					21	9	4	0	0	0	1.0923	1	12813	12813		13.454	0.64233	1	1291200	+		2116	21900	1332	1332	2654	2654					0.21574203135787684
ALLVLGAPP	9	Unmodified	_ALLVLGAPP_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.77484130859375	2	425.773471	849.53239	-0.086541	-3.6847E-05	3.0095	0.0012814	2.923	0.0012445	425.7747981740325	42.002	1.1717	42.002	41.579	42.75	0					125	33	6	0	0	0	0.93795	1	3859	3859		29.842	8.1392	1	65572000			2117	11892	1333	1333	2655	2655					0.10160464770854105
ALLVLGAPP	9	Unmodified	_ALLVLGAPP_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.77496337890625	2	425.773471	849.53239	-0.25623	-0.0001091	3.2704	0.0013925	3.0142	0.0012834	425.7748978545771	42.198	1.1395	42.066	41.641	42.78	-0.13219					115	32	6	0	0	0	0.99355	1	3887	3887		21.702	6.0661	1	68817000			2118	11892	1333	1333	2656	2656					0.10160464770854105
ALLVLGAPP	9	Unmodified	_ALLVLGAPP_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.7746887207031	2	425.773471	849.53239	0.19274	8.2063E-05	2.6344	0.0011217	2.8272	0.0012037	425.7746312811681	42.075	1.1896	42.101	41.636	42.825	0.026012					124	33	6	0	0	0	0.93795	1	3828	3828		29.842	8.1392	1	66524000			2119	11892	1333	1333	2657	2657					0.10160464770854105
ALLVLGAPP	9	Unmodified	_ALLVLGAPP_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7746276855469	2	425.773471	849.53239	0.17338	7.3822E-05	2.9368	0.0012504	3.1102	0.0013242	425.77467244094674	42.032	1.0796	41.909	41.603	42.683	-0.12299					99	28	5	0	0	0	0.99355	1	3796	3796		21.702	6.0661	1	37307000			2120	11892	1333	1333	2658	2658					0.10160464770854105
ALLVLGAPP	9	Unmodified	_ALLVLGAPP_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7750549316406	2	425.773471	849.53239	-0.20506	-8.731E-05	3.2791	0.0013961	3.074	0.0013088	425.77482073258034	42.256	0.99166	42.024	41.733	42.725	-0.23186					102	26	5	0	0	0	0.99355	1	3821	3821		21.702	6.0661	1	38059000			2121	11892	1333	1333	2659	2659					0.10160464770854105
ALLVLYPL	8	Unmodified	_ALLVLYPL_					0	0	0		ENST00000374632.7_1_1:23240108-23240360:+|nuORF	ENST00000374632.7_1_1:23240108-23240360:+|nuORF	ENST00000374632.7_1_1:23240108-23240360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2539367675781	2	451.291497	900.568441	-0.24747	-0.00011168	-4.108	-0.0018539	-4.3555	-0.0019656	451.2895424543339	36.69	0.67767	36.728	36.478	37.155	0.038044					24	17	2	0	0	0	0.027866	1	2899	2899		24.504	0	1	115070			2122	13125	1334	1334	2660	2660					0.11417921947690957
ALLVLYPL	8	Unmodified	_ALLVLYPL_					0	0	0		ENST00000374632.7_1_1:23240108-23240360:+|nuORF	ENST00000374632.7_1_1:23240108-23240360:+|nuORF	ENST00000374632.7_1_1:23240108-23240360:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.291497	900.568441	0.576	0.00025994	-4.9116	-0.0022166	-4.3356	-0.0019566	451.28910909783616	36.666	0.64029	36.666	36.44	37.081	0	-0.030979	-0.0002556	NaN	24.504	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132270			2123	13125	1334	1334							0.11417921947690957
ALLVPVAVT	9	Unmodified	_ALLVPVAVT_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692435-96692645:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.787841796875	2	441.786579	881.558604	0.23631	0.0001044	2.723	0.001203	2.9593	0.0013074	441.7876811390936	42.861	0.74303	42.722	42.142	42.885	-0.13929					56	20	5	0	0	0	0.78069	1	3961	3961		40.573	0	1	12196000			2124	9534	1335	1335	2661	2661					0.11308733942325944
ALLVPVAVT	9	Unmodified	_ALLVPVAVT_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692435-96692645:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7878723144531	2	441.786579	881.558604	0.36074	0.00015937	2.6381	0.0011655	2.9989	0.0013249	441.78763511523596	42.748	0.64491	42.774	42.289	42.934	0.026012					56	17	5	0	0	0	0.78069	1	3911	3911		40.573	5.3719	1	12475000			2125	9534	1335	1335	2662	2662					0.11308733942325944
ALLVRPVN	8	Unmodified	_ALLVRPVN_					0	0	0			REV__ENSG00000160856|ENST00000368184|FCRL3	REV__ENSG00000160856|ENST00000368184|FCRL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.28106689453125	2	441.281995	880.549437	0.071002	3.1332E-05	-0.0045525	-2.0089E-06	0.066449	2.9323E-05	441.2817536139896	57.582	1.3089	57.582	57.148	58.457	0					57	34	4	0	0	0	0.96719	1	6484	6484		42.474	0	1	3060200	+		2126	25352	1336	1336	2663	2663					0.10438385376653514
ALLVRVCV	8	Unmodified	_ALLVRVCV_					0	0	0		ENST00000515320.5_1_5:118788206-118809606:+|nuORF	ENST00000515320.5_1_5:118788206-118809606:+|nuORF	ENST00000515320.5_1_5:118788206-118809606:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.7748107910156	2	436.772948	871.531344	0.53541	0.00023385	3.5556	0.001553	4.091	0.0017868	436.77442646981	90.011	2.1118	90.025	89.55	91.662	0.013443					149	50	5	0	0	0	0.94001	1	11278	11278		46.766	13.251	1	34213000			2127	15897	1337	1337	2664	2664					0.0904392713028983
ALLVVAISVC	10	Unmodified	_ALLVVAISVC_					0	0	0			REV__STX4|p.T283A|1|0.38|ENSG00000103496|chr16:31039756-31039756|A/G|missense_variant	REV__STX4|p.T283A|1|0.38|ENSG00000103496|chr16:31039756-31039756|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3009033203125	2	494.298996	986.583439	0.003029	1.4972E-06	3.2604	0.0016116	3.2634	0.0016131	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	1.1267	1	12317	12317		29.15	4.9468	1	42897000	+		2128	37588	1338	1338	2665	2665					0.08961045753392227
ALLVVAISVC	10	Unmodified	_ALLVVAISVC_					0	0	0			REV__STX4|p.T283A|1|0.38|ENSG00000103496|chr16:31039756-31039756|A/G|missense_variant	REV__STX4|p.T283A|1|0.38|ENSG00000103496|chr16:31039756-31039756|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.3010559082031	2	494.298996	986.583439	0.57173	0.00028261	2.7614	0.001365	3.3331	0.0016476	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	1.1056	1	12219	12219		31.955	1.4512	1	37513000	+		2129	37588	1338	1338	2666	2666					0.08961045753392227
ALLVVAISVC	10	Unmodified	_ALLVVAISVC_					0	0	0			REV__STX4|p.T283A|1|0.38|ENSG00000103496|chr16:31039756-31039756|A/G|missense_variant	REV__STX4|p.T283A|1|0.38|ENSG00000103496|chr16:31039756-31039756|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3008117675781	2	494.298996	986.583439	0.89614	0.00044296	2.2975	0.0011357	3.1936	0.0015786	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	1.0665	1	12214	12214		37.159	4.3467	1	45891000	+		2130	37588	1338	1338	2667	2667					0.08961045753392227
ALLYGLQDL	9	Unmodified	_ALLYGLQDL_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2861022949219	2	503.2844	1004.55425	-0.75135	-0.00037814	0.42129	0.00021203	-0.33006	-0.00016611	503.2843323356794	83.491	0.94669	83.491	83.138	84.084	0					48	21	3	0	0	0	0.39228	1	10452	10452		66.429	0.6261	1	1195600			2131	3577	1339	1339	2668	2668					0.052152247287722275
ALLYPVIMTNE	11	Unmodified	_ALLYPVIMTNE_					0	0	0		ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6	ENSG00000230301|ENST00000615035|OR5H6	ENSG00000230301|ENST00000615035|OR5H6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7396545410156	3	421.893297	1262.65806	-0.46742	-0.0001972	0.035073	1.4797E-05	-0.43235	-0.0001824	421.8930971425562	23.182	0.35751	23.182	22.848	23.206	0					15	7	3	0	0	0	0.024731	1	861	861		30.569	0	1	183770			2132	10687	1340	1340	2669	2669					0.03723763774155486
ALMADMVYV	9	Oxidation (M)	_ALMADM(Oxidation (M))VYV_		ALM(0.001)ADM(0.999)VYV		ALM(-31)ADM(31)VYV	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7424926757812	2	514.743196	1027.47184	-0.69133	-0.00035586	1.3469	0.00069328	0.65553	0.00033743	514.7437199999408	69.976	0.50393	69.988	69.668	70.171	0.012421					28	12	3	0	0	0	0.55828	1	8372	8372		55.504	9.5523	2	2358000			2133	5711	1341	1341	2670	2670		244			-0.040797566660558005
ALMARGARGT	10	Unmodified	_ALMARGARGT_					0	0	0			REV__ENSG00000128310|ENST00000249041|GALR3	REV__ENSG00000128310|ENST00000249041|GALR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2905578613281	2	502.276918	1002.53928	-0.6785	-0.00034079	-0.083976	-4.2179E-05	-0.76247	-0.00038297	502.2768183469775	86.187	0.7355	86.21	85.944	86.68	0.023666					31	16	2	0	0	0	0.03519	1	10799	10799		29.15	6.5699	1	630250	+		2134	22980	1342	1342	2671	2671					0.03811454379786028
ALMDEINFM	9	Unmodified	_ALMDEINFM_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2454833984375	2	542.246103	1082.47765	-0.91434	-0.0004958	1.1856	0.00064289	0.27127	0.0001471	542.2465462545109	89.684	0.77414	89.684	89.44	90.214	0					43	18	3	0	0	0	0.16468	2	11340	11327;11340		96.19	40.686	1	924360		+	2135	520;569	1343	1343	2672;2673	2673					-0.060286581543778084
ALMDEINFM	9	Unmodified	_ALMDEINFM_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.245849609375	2	542.246103	1082.47765	-0.30784	-0.00016693	0.52325	0.00028373	0.2154	0.0001168	542.2461981630324	89.668	0.74364	89.646	89.367	90.111	-0.021645					38	17	3	0	0	0	0.42604	1	11304	11304		64.207	14.766	1	902730		+	2136	520;569	1343	1343	2674	2674					-0.060286581543778084
ALMDEINFM	9	Unmodified	_ALMDEINFM_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2461547851562	2	542.246103	1082.47765	-0.56964	-0.00030889	0.93115	0.00050491	0.36151	0.00019603	542.2463534859929	89.743	0.77301	89.757	89.467	90.24	0.013435					44	18	4	0	0	0	0.16468	1	11258	11258		96.19	5.4138	1	1009300		+	2137	520;569	1343	1343	2675	2675					-0.060286581543778084
ALMDEINFM	9	Unmodified	_ALMDEINFM_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.2464599609375	2	542.246103	1082.47765	-1.1223	-0.00060855	1.6135	0.00087492	0.49123	0.00026637	542.2468394965264	89.772	0.79747	89.61	89.257	90.054	-0.1626					44	18	4	0	0	0	0.16468	2	10963	10954;10963		96.19	35.218	1	1169100		+	2138	520;569	1343	1343	2676;2677	2677					-0.060286581543778084
ALMDEINFM	9	Unmodified	_ALMDEINFM_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.2456665039062	2	542.246103	1082.47765	-0.65561	-0.0003555	1.1225	0.00060867	0.46689	0.00025317	542.2465485527789	89.736	0.76147	89.608	89.285	90.046	-0.12774					47	17	5	0	0	0	0.14024	3	10961	10961;10973;10986		101.6	46.097	1	1099200		+	2139	520;569	1343	1343	2678;2679;2680	2678					-0.060286581543778084
ALMDEINFM	9	Unmodified	_ALMDEINFM_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.2467651367188	2	542.246103	1082.47765	-0.53831	-0.0002919	0.8769	0.0004755	0.33859	0.0001836	542.2463865951578	89.795	0.88134	89.657	89.316	90.197	-0.13786					46	20	4	0	0	0	0.28753	2	10963	10954;10963		77.318	34.843	1	1144600		+	2140	520;569	1343	1343	2681;2682	2682					-0.060286581543778084
ALMDEINFM	9	Oxidation (M)	_ALMDEINFM(Oxidation (M))_		ALMDEINFM(1)		ALM(-52)DEINFM(52)	0	0	1		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2446899414062	2	550.24356	1098.47257	-0.73881	-0.00040653	0.57266	0.0003151	-0.16615	-9.1423E-05	550.2437082771837	78.202	1.3275	78.218	77.78	79.107	0.015907					78	31	3	0	0	0	0.35646	1	9596	9596		68.787	10.005	2	1642100		+	2141	520;569	1343	1344	2683	2683		10			-0.07272962017009377
ALMDEINFM	9	Oxidation (M)	_ALMDEINFM(Oxidation (M))_		ALMDEINFM(1)		ALM(-71)DEINFM(71)	0	0	1		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.244140625	2	550.24356	1098.47257	0.26292	0.00014467	-0.26685	-0.00014683	-0.0039286	-2.1617E-06	550.2432483792371	78.453	1.314	78.221	77.75	79.064	-0.23141					77	30	3	0	0	0	0.31037	1	9372	9372		74.255	10.949	2	1510600		+	2142	520;569	1343	1344	2684	2684		10			-0.07272962017009377
ALMDEVVKA	9	Unmodified	_ALMDEVVKA_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.26251220703125	2	488.26261	974.510668	-0.10347	-5.0521E-05	0.084862	4.1435E-05	-0.018608	-9.0857E-06	488.2624869364887	55.469	0.72614	55.238	54.927	55.653	-0.23087					37	20	2	0	0	0	0.1158	1	5947	5947		107.01	27.556	1	4033300			2143	2385	1344	1345	2685	2685					0.022392919599724337
ALMELFPKL	9	Unmodified	_ALMELFPKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7733154296875	2	531.306821	1060.59909	-0.8848	-0.0004701	0.48702	0.00025876	-0.39778	-0.00021134	531.30705974184	82.185	1.311	82.185	81.869	83.18	0					57	30	2	0	0	0	0.024261	1	10338	10338		74.255	16.444	1	652890			2144	3841	1345	1346	2686	2686					0.0712133227045797
ALMELFPKL	9	Unmodified	_ALMELFPKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.776611328125	2	531.306821	1060.59909	0.68523	0.00036407	-1.003	-0.00053292	-0.3178	-0.00016885	531.3061817487704	82.214	1.816	82.104	81.803	83.619	-0.11006					72	42	2	0	0	0	0.023635	1	10347	10347		87.754	27.351	1	635810			2145	3841	1345	1346	2687	2687					0.0712133227045797
ALMELFPKL	9	Unmodified	_ALMELFPKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3064575195312	2	531.306821	1060.59909	-0.55338	-0.00029402	0.26031	0.00013831	-0.29307	-0.00015571	531.306906160303	82.048	1.3508	82.074	81.779	83.129	0.025711					57	31	2	0	0	0	0.48817	1	10166	10166		60.118	0	1	709680			2146	3841	1345	1346	2688	2688					0.0712133227045797
ALMELFPKL	9	Oxidation (M)	_ALM(Oxidation (M))ELFPKL_		ALM(1)ELFPKL		ALM(64)ELFPKL	0	0	1		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7919311523438	2	539.304278	1076.594	-0.597	-0.00032196	0.046388	2.5018E-05	-0.55061	-0.00029695	539.3042929757088	73.052	1.1512	73.061	72.489	73.64	0.0096512					39	28	2	0	0	0	0.024261	1	8802	8802		64.207	16.248	1	1358500			2147	3841	1345	1347	2689	2689		148			0.05877028407826401
ALMELFPKL	9	Oxidation (M)	_ALM(Oxidation (M))ELFPKL_					0	0	1		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.304278	1076.594	-0.73495	-0.00039636	-0.093396	-5.0369E-05	-0.82834	-0.00044673	539.3041142875994	73.141	1.2436	73.141	72.454	73.698	0	0.2486	-0.0001345	NaN	90.37	41	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1426400			2148	3841	1345	1347				148			0.05877028407826401
ALMELFPKL	9	Oxidation (M)	_ALM(Oxidation (M))ELFPKL_					0	0	1		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.304278	1076.594	-0.53614	-0.00028914	1.731	0.00093356	1.1949	0.00064441	539.3044774136268	73.019	0.3437	72.742	72.582	72.926	-0.2769	-0.15029	0.0018333	NaN	90.37	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57531			2149	3841	1345	1347				148			0.05877028407826401
ALMELFPKL	9	Oxidation (M)	_ALM(Oxidation (M))ELFPKL_					0	0	1		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.304278	1076.594	-1.2932	-0.00069745	-0.055503	-2.9933E-05	-1.3488	-0.00072739	539.3028835370245	72.888	0.66911	72.69	72.33	72.999	-0.1981	-0.20262	-9.3629E-05	NaN	90.37	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77598			2150	3841	1345	1347				148			0.05877028407826401
ALMGIGIKP	9	Unmodified	_ALMGIGIKP_					0	0	0			REV__ENST00000471223.1_1_1:3548765-3548867:-|nuORF	REV__ENST00000471223.1_1_1:3548765-3548867:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.27447509765625	2	450.272781	898.531009	-0.15897	-7.158E-05	3.3083	0.0014896	3.1493	0.001418	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	0.80658	1	11443	11443		38.806	3.6054	1	55183000	+		2151	22270	1346	1348	2690	2690					0.07768507410457914
ALMKARVK	8	Unmodified	_ALMKARVK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000547491.1_1_12:112186933-112194274:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.7637939453125	2	458.791672	915.568792	-0.11216	-5.1457E-05	1.1621	0.00053317	1.05	0.00048171	458.791439650085	36.019	0.13628	36.057	35.962	36.098	0.038044					5	3	2	0	0	0	0.027866	1	2756	2756		1.3276	0	1	41207			2152	3100	1347	1349	2691	2691					0.10763018395914514
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(110)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.778076171875	2	500.778428	999.542302	1.3782	0.00069016	-1.4588	-0.00073051	-0.080569	-4.0347E-05	500.777629086162	63.818	1.7183	63.818	63.373	65.091	0					112	46	4	0	0	0	0.088511	3	7493	7493;7505;7518		114.59	35.135	1	10617000			2153	10638	1348	1350	2692;2693;2694	2692		447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(85)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7783203125	2	500.778428	999.542302	-0.020694	-1.0363E-05	-0.032434	-1.6242E-05	-0.053128	-2.6606E-05	500.7782086902758	69.138	2.5003	69.138	67.528	70.029	0					131	64	3	0	0	0	0.22754	1	8298	8298		85.359	24.388	1	3048400			2154	10638	1348	1350	2695	2695		447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(77)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.77813720703125	2	500.778428	999.542302	-0.049029	-2.4553E-05	-0.062093	-3.1095E-05	-0.11112	-5.5647E-05	500.778263571743	63.991	1.8112	63.739	63.372	65.183	-0.25141					139	48	5	0	0	0	0.29104	2	7520	7520;7533		76.847	22.07	1	10150000			2155	10638	1348	1350	2696;2697	2696		447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(110)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7779846191406	2	500.778428	999.542302	0.37592	0.00018825	-0.37112	-0.00018585	0.004797	2.4022E-06	500.778021987351	69.423	3.5267	69.13	66.543	70.07	-0.29292					180	89	3	0	0	0	0.10076	2	8325	8312;8325		110.34	41.853	1	2709600			2156	10638	1348	1350	2698;2699	2699		447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(89)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7784423828125	2	500.778428	999.542302	1.7239	0.00086331	-1.9329	-0.00096796	-0.20899	-0.00010466	500.7774110994761	63.863	1.7933	63.908	63.402	65.195	0.045502					113	48	4	0	0	0	0.20304	2	7428	7416;7428		88.643	39.201	1	10337000			2157	10638	1348	1350	2700;2701	2701		447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_		ALM(1)PVLNQV		ALM(100)PVLNQV	0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7784118652344	2	500.778428	999.542302	-0.19075	-9.5521E-05	0.098283	4.9218E-05	-0.092463	-4.6304E-05	500.7782692438269	69.171	2.4084	69.186	67.665	70.073	0.015121					126	62	3	0	0	0	0.14199	2	8234	8223;8234		101.21	26.957	1	2652200			2158	10638	1348	1350	2702;2703	2703		447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_					0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.778428	999.542302	-0.16046	-8.0353E-05	-0.2087	-0.00010451	-0.36916	-0.00018487	500.77805361598234	64.068	1.0239	63.84	63.512	64.536	-0.22773	0.015297	0.00083553	NaN	114.59	61	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847020			2159	10638	1348	1350				447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_					0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.778428	999.542302	-0.084615	-4.2374E-05	-0.54589	-0.00027337	-0.63051	-0.00031574	500.77791246426176	64.008	1.1789	63.816	63.529	64.708	-0.19243	-0.0086518	0.00049781	NaN	114.59	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	809840			2160	10638	1348	1350				447			0.04251284713939185
ALMPVLNQV	9	Oxidation (M)	_ALM(Oxidation (M))PVLNQV_					0	0	1		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.778428	999.542302	-0.4811	-0.00024092	-0.0065846	-3.2974E-06	-0.48768	-0.00024422	500.778112229214	64.084	1.0136	63.826	63.565	64.579	-0.25824	0.0014658	0.001038	NaN	114.59	56	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835890			2161	10638	1348	1350				447			0.04251284713939185
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7812194824219	2	492.78097	983.547388	0.060518	2.9822E-05	-1.3771	-0.00067863	-1.3166	-0.00064881	492.78032772801714	78.062	0.85857	78.062	77.672	78.531	0					72	20	5	0	0	0	0.013308	6	9662	9628;9638;9650;9662;9674;9686		170.31	56.412	1	32446000			2162	10638	1348	1351	2704;2705;2706;2707;2708;2709	2707					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.78240966796875	2	492.78097	983.547388	0.85383	0.00042075	-2.2272	-0.0010975	-1.3734	-0.00067678	492.7798999518225	78.228	0.8208	78.035	77.643	78.464	-0.19211					74	19	5	0	0	0	0.013308	6	9627	9616;9627;9639;9651;9663;9675		170.31	65.242	1	33467000			2163	10638	1348	1351	2710;2711;2712;2713;2714;2715	2711					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.78143310546875	2	492.78097	983.547388	-0.4887	-0.00024082	-0.81352	-0.00040088	-1.3022	-0.00064171	492.7806032335353	78.078	0.78299	78.094	77.739	78.522	0.015907					71	18	5	0	0	0	0.016588	6	9592	9557;9568;9580;9592;9604;9619		153.88	47.703	1	31091000			2164	10638	1348	1351	2716;2717;2718;2719;2720;2721	2719					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.7828063964844	2	492.78097	983.547388	-0.65543	-0.00032298	0.41164	0.00020285	-0.24379	-0.00012014	492.78103453158553	78.215	0.84888	77.958	77.576	78.424	-0.25739					59	19	4	0	0	0	0.033883	4	9314	9304;9314;9327;9341		138.48	53.12	1	3789100			2165	10638	1348	1351	2722;2723;2724;2725	2723					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.78314208984375	2	492.78097	983.547388	0.59379	0.00029261	-0.90818	-0.00044753	-0.31438	-0.00015492	492.78038154937167	78.143	0.84578	77.905	77.536	78.382	-0.23889					58	19	4	0	0	0	0.0146	4	9321	9311;9321;9334;9349		163.84	66.372	1	3545300			2166	10638	1348	1351	2726;2727;2728;2729	2727					0.05495588576548016
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.78570556640625	2	492.78097	983.547388	0.037103	1.8284E-05	-0.50808	-0.00025037	-0.47098	-0.00023209	492.78056939927944	78.091	0.80864	77.935	77.575	78.383	-0.15591					55	18	4	0	0	0	0.088511	3	9286	9286;9294;9308		114.59	32.423	1	3504700			2167	10638	1348	1351	2730;2731;2732	2730					0.05495588576548016
ALMTETCTL	9	Carbamidomethyl (C),Oxidation (M)	_ALM(Oxidation (M))TETC(Carbamidomethyl (C))TL_	ALMTETC(1)TL	ALM(1)TETCTL	ALMTETC(66)TL	ALM(66)TETCTL	0	1	1			REV__CPA6|p.P416L|1|0.39|ENSG00000165078|chr8:67422571-67422571|G/A|missense_variant	REV__CPA6|p.P416L|1|0.39|ENSG00000165078|chr8:67422571-67422571|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2391357421875	2	528.241018	1054.46748	0.19259	0.00010173	-3.4575	-0.0018264	-3.2649	-0.0017246	528.2390762959993	67.67	3.6582	67.694	66.457	70.115	0.023911					233	93	4	0	0	0	0.40179	1	8106	8106		65.803	11.027	1	5432900	+		2168	19611	1349	1352	2733	2733	247	604			-0.05757265879606166
ALMVPLLSAS	10	Unmodified	_ALMVPLLSAS_					0	0	0		ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2906494140625	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	1.0541	2	10826	10790;10826		38.806	1.647	1	8460100			2169	13370	1350	1353	2734;2735	2735					0.06244455373746405
ALMVPLLSAS	10	Unmodified	_ALMVPLLSAS_					0	0	0		ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29034423828125	2	501.288628	1000.5627	0.66236	0.00033203	2.9983	0.001503	3.6606	0.001835	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	1.1217	1	10192	10192		21.96	0	1	3151900			2170	13370	1350	1353	2736	2736					0.06244455373746405
ALMVPLLSAS	10	Unmodified	_ALMVPLLSAS_					0	0	0		ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.0541	2	10453	10453;10477		38.806	2.6214	1	10557000			2171	13370	1350	1353	2737;2738	2737					0.06244455373746405
ALMVPLLSAS	10	Unmodified	_ALMVPLLSAS_					0	0	0		ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.28997802734375	2	501.288628	1000.5627	0.41475	0.00020791	3.1647	0.0015864	3.5794	0.0017943	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	1.1166	1	10195	10195		30.504	0	1	2920800			2172	13370	1350	1353	2739	2739					0.06244455373746405
ALMVPLLSAS	10	Unmodified	_ALMVPLLSAS_					0	0	0		ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2904052734375	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	1.0541	5	10431	10431;10443;10479;10491;10516		38.806	9.6566	1	10571000			2173	13370	1350	1353	2740;2741;2742;2743;2744	2740					0.06244455373746405
ALMVPLLSAS	10	Unmodified	_ALMVPLLSAS_					0	0	0		ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29034423828125	2	501.288628	1000.5627	-0.25386	-0.00012726	3.7972	0.0019035	3.5434	0.0017763	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	1.0665	1	10105	10105		37.159	3.2375	1	2648000			2174	13370	1350	1353	2745	2745					0.06244455373746405
ALMVPLLSAS	10	Unmodified	_ALMVPLLSAS_					0	0	0		ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29046630859375	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0665	2	10254	10254;10350		37.159	4.3467	1	10074000			2175	13370	1350	1353	2746;2747	2746					0.06244455373746405
ALNAQKRK	8	Unmodified	_ALNAQKRK_					0	0	0			REV__nc|ENSG00000181982|Q6ZUS6|CCDC149	REV__nc|ENSG00000181982|Q6ZUS6|CCDC149	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2571716308594	2	464.787976	927.561398	-0.33271	-0.00015464	-0.4067	-0.00018903	-0.73941	-0.00034367	464.78771494213527	27.5	0.29469	27.487	27.277	27.572	-0.012983					12	7	2	0	0	0	0.027866	1	1486	1486		28.254	8.8943	1	65053	+		2176	27441	1351	1354	2748	2748					0.09472002119844092
ALNEDIVRV	9	Unmodified	_ALNEDIVRV_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7894897460938	2	514.790381	1027.56621	0.53048	0.00027309	-0.78769	-0.0004055	-0.25721	-0.00013241	514.7898894747209	55.355	0.95047	55.355	55.049	55.999	0					76	26	4	0	0	0	0.041068	2	6099	6099;6110		132.76	53.045	1	5166700			2177	7608	1352	1355	2749;2750	2749					0.05352841471949432
ALNEDIVRV	9	Unmodified	_ALNEDIVRV_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7902221679688	2	514.790381	1027.56621	-0.16815	-8.6562E-05	-0.18037	-9.2854E-05	-0.34852	-0.00017942	514.7902215662665	55.437	1.1789	55.281	54.994	56.173	-0.15601					80	32	4	0	0	0	0.087669	2	6097	6085;6097		114.89	47.401	1	6227900			2178	7608	1352	1355	2751;2752	2752					0.05352841471949432
ALNEDIVRV	9	Unmodified	_ALNEDIVRV_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.790283203125	2	514.790381	1027.56621	-1.3442	-0.000692	0.8829	0.00045451	-0.46134	-0.00023749	514.7907975518376	55.141	0.94058	55.239	54.916	55.856	0.098015					68	25	4	0	0	0	0.071379	2	5990	5990;6000		120.87	46.613	1	6178300			2179	7608	1352	1355	2753;2754	2753					0.05352841471949432
ALNEEAGRLLL	11	Unmodified	_ALNEEAGRLLL_					0	0	0		ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	599.8429565429688	2	599.843145	1197.67174	-1.326	-0.00079542	1.1707	0.00070221	-0.15539	-9.321E-05	599.8437416986762	64.437	0.74095	64.437	64.168	64.909	0					47	19	3	0	0	0	0.00043084	1	7593	7593		140.11	46.969	1	1464300			2180	2879	1353	1356	2755	2755					0.08080757597576849
ALNEEAGRLLL	11	Unmodified	_ALNEEAGRLLL_					0	0	0		ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	599.843145	1197.67174	-0.88008	-0.00052791	0.60076	0.00036036	-0.27932	-0.00016755	599.8434117873812	64.423	0.67432	64.469	64.225	64.899	0.045502	0.0056332	-0.00060812	NaN	140.11	52	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1405100			2181	2879	1353	1356							0.08080757597576849
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.3031921386719	2	507.303124	1012.5917	-0.49981	-0.00025356	-1.5734	-0.00079817	-2.0732	-0.0010517	507.3032308290185	56.919	1.1432	56.919	56.46	57.603	0					146	31	6	0	0	0	0.030064	4	6385	6361;6373;6385;6397		141.52	45.061	1	30875000			2182	8555	1354	1357	2756;2757;2758;2759	2758					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.302978515625	2	507.303124	1012.5917	-0.14654	-7.4339E-05	-1.9301	-0.00097914	-2.0766	-0.0010535	507.3030343691391	57.092	1.2331	56.928	56.423	57.656	-0.16432					147	33	6	0	0	0	0.025498	4	6367	6355;6367;6379;6392		145.16	51.96	1	26588000			2183	8555	1354	1357	2760;2761;2762;2763	2761					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.30303955078125	2	507.303124	1012.5917	-0.26049	-0.00013215	-1.7429	-0.00088417	-2.0034	-0.0010163	507.3031528811818	56.73	1.1472	56.827	56.397	57.544	0.097893					143	31	6	0	0	0	0.025498	4	6275	6247;6263;6275;6293		145.16	48.991	1	26490000			2184	8555	1354	1357	2764;2765;2766;2767	2766					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.3024597167969	2	507.303124	1012.5917	-0.3504	-0.00017776	-1.5027	-0.00076234	-1.8531	-0.0009401	507.30319428693304	56.999	1.084	56.832	56.284	57.369	-0.1672					114	28	6	0	0	0	0.041068	1	6192	6192		132.76	5.2962	1	5437300			2185	8555	1354	1357	2768	2768					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3030700683594	2	507.303124	1012.5917	0.12639	6.412E-05	-2.1731	-0.0011024	-2.0467	-0.0010383	507.30292407560415	57.049	1.1033	56.847	56.365	57.469	-0.20209					111	29	6	0	0	0	0.071379	2	6203	6203;6217		120.87	38.628	1	5601100			2186	8555	1354	1357	2769;2770	2769					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3028869628906	2	507.303124	1012.5917	-0.16458	-8.3494E-05	-2.0061	-0.0010177	-2.1706	-0.0011012	507.30307842665627	57.128	1.0858	56.903	56.347	57.432	-0.2248					102	28	5	0	0	0	0.048057	2	6198	6198;6210		129.42	54.378	1	5392300			2187	8555	1354	1357	2771;2772	2771					0.08590315994376851
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7926635742188	2	518.792924	1035.57129	1.0044	0.0005211	-1.5653	-0.00081205	-0.56081	-0.00029095	518.7921775319962	63.978	1.2779	63.978	63.666	64.944	0					108	34	5	0	0	0	0.013293	4	7524	7512;7524;7537;7549		176.09	67.999	1	27682000			2188	5087	1355	1358	2773;2774;2775;2776	2774					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.79248046875	2	518.792924	1035.57129	-0.27306	-0.00014166	-0.37973	-0.000197	-0.65279	-0.00033866	518.7927983110709	64.223	1.3761	63.971	63.624	65	-0.25141					115	36	5	0	0	0	0.016542	5	7518	7518;7531;7543;7555;7568		154.12	60.923	1	31533000			2189	5087	1355	1358	2777;2778;2779;2780;2781	2777					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7925415039062	2	518.792924	1035.57129	1.0772	0.00055883	-1.7842	-0.00092562	-0.70702	-0.00036679	518.7920795068602	63.983	1.2482	64.029	63.688	64.937	0.045502					109	33	5	0	0	0	0.013293	4	7452	7427;7439;7452;7464		176.09	59.183	1	32761000			2190	5087	1355	1358	2782;2783;2784;2785	2784					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.79296875	2	518.792924	1035.57129	-0.45521	-0.00023616	0.313	0.00016238	-0.14221	-7.3776E-05	518.7930995264204	64.236	1.3987	64.008	63.7	65.099	-0.22774					103	34	6	0	0	0	0.013293	4	7318	7271;7285;7297;7318		176.09	59.183	1	9875600			2191	5087	1355	1358	2786;2787;2788;2789	2789					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7930908203125	2	518.792924	1035.57129	0.16766	8.6982E-05	-0.33979	-0.00017628	-0.17213	-8.9301E-05	518.7927581956503	64.238	1.3567	64.045	63.717	65.073	-0.19243					103	33	6	0	0	0	0.016542	4	7300	7277;7288;7300;7321		154.12	65.7	1	9373300			2192	5087	1355	1358	2790;2791;2792;2793	2792					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.79296875	2	518.792924	1035.57129	-0.22473	-0.00011659	0.013514	7.0108E-06	-0.21122	-0.00010958	518.7929474283377	64.311	1.347	64.056	63.716	65.063	-0.25563					79	33	4	0	0	0	0.014918	3	7288	7272;7288;7300		162.25	57.506	1	11217000			2193	5087	1355	1358	2794;2795;2796	2795					0.05493145334571636
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.2984008789062	2	514.298373	1026.58219	-0.56862	-0.00029244	-0.11058	-5.687E-05	-0.6792	-0.00034931	514.2981789491843	52.728	1.2446	52.728	52.16	53.404	0					74	32	5	0	0	0	0.013293	4	5655	5642;5655;5665;5678		190.52	75.024	1	5993100			2194	1700	1356	1359	2797;2798;2799;2800	2798					0.0699654770885445
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.29833984375	2	514.298373	1026.58219	0.074301	3.8213E-05	-0.57897	-0.00029776	-0.50467	-0.00025955	514.2978200627684	52.776	1.4346	52.628	51.985	53.42	-0.14723					95	37	4	0	0	0	0.013293	4	5642	5631;5642;5654;5667		190.52	88.917	1	5865800			2195	1700	1356	1359	2801;2802;2803;2804	2802					0.0699654770885445
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.2989501953125	2	514.298373	1026.58219	-0.28294	-0.00014552	-0.29239	-0.00015038	-0.57533	-0.00029589	514.2981060060578	52.525	0.96915	52.617	52.119	53.088	0.091938					69	24	4	0	0	0	0.013293	4	5545	5545;5557;5567;5580		205.58	86.839	1	8571400			2196	1700	1356	1359	2805;2806;2807;2808	2805					0.0699654770885445
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.298373	1026.58219	-0.36201	-0.00018618	0.73638	0.00037872	0.37438	0.00019254	514.2984065027905	52.62	0.55776	52.493	52.234	52.792	-0.12705	-0.11523	0.00094668	NaN	190.52	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037400			2197	1700	1356	1359							0.0699654770885445
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.298373	1026.58219	0.50858	0.00026156	-0.22373	-0.00011506	0.28485	0.0001465	514.2980509202266	52.863	0.55715	52.605	52.365	52.922	-0.25838	-0.0039582	-4.0893E-05	NaN	190.52	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687780			2198	1700	1356	1359							0.0699654770885445
ALNEQIARL	9	Unmodified	_ALNEQIARL_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.298373	1026.58219	-0.044329	-2.2798E-05	-0.34605	-0.00017797	-0.39038	-0.00020077	514.2980160242207	52.77	0.82276	52.58	52.348	53.171	-0.18981	-0.028807	-0.00016671	NaN	190.52	50	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937070			2199	1700	1356	1359							0.0699654770885445
ALNFQTPGP	9	Unmodified	_ALNFQTPGP_					0	0	0		ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38049266-38050137:-|nuORF	ENSG00000187091|ENST00000334661|PLCD1	ENSG00000187091|ENST00000334661|PLCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7557373046875	2	472.745442	943.476331	0.30657	0.00014493	-0.21342	-0.00010089	0.093149	4.4036E-05	472.7454564417892	42.949	0.58141	42.949	42.786	43.367	0					22	15	2	0	0	0	0.024506	1	3967	3967		38.806	26.599	1	218050			2200	9606	1357	1360	2809	2809					0.00233211863383076
ALNGLARATR	10	Unmodified	_ALNGLARATR_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2799072265625	2	521.809439	1041.60433	0.15343	8.006E-05	-1.4117	-0.00073665	-1.2583	-0.00065659	521.8087341525254	21.889	0.38005	21.712	21.543	21.923	-0.17721					11	7	2	0	0	0	0.03519	1	751	751		30.318	0	1	35767	+		2201	24038	1358	1361	2810	2810					0.08518772177239953
ALNIGYYSSI	10	Unmodified	_ALNIGYYSSI_					0	0	0			REV__nc|ENSG00000138613|Q8WW43-2|APH1B	REV__nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.7862548828125	2	550.784764	1099.55498	0.39704	0.00021868	2.897	0.0015956	3.2941	0.0018143	550.7863157282852	101	0.56162	100.87	100.66	101.22	-0.13156					23	13	3	0	0	0	0.98754	1	12527	12527		47.657	3.2801	1	286730	+		2202	23865	1359	1362	2811	2811					0.009180193778092871
ALNKARAR	8	Unmodified	_ALNKARAR_					0	0	0		ENST00000423218.6_2_15:68594218-68594374:-|nuORF	ENST00000423218.6_2_15:68594218-68594374:-|nuORF	ENST00000423218.6_2_15:68594218-68594374:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.26885986328125	2	450.280318	898.546083	-0.14535	-6.5449E-05	2.8042	0.0012627	2.6589	0.0011972	450.28147949121643	52.326	0.61659	52.142	51.778	52.395	-0.18404					26	15	2	0	0	0	0.027866	1	5389	5389		7.6903	0	1	183360			2203	14021	1360	1363	2812	2812					0.09275135322650385
ALNLLNKNVPR	11	Unmodified	_ALNLLNKNVPR_					0	0	0		nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B;UNC45B|p.A554Cfs*7|1|0.38|ENSG00000141161|chr17:35170221-35170222|-/C|frameshift_variant	nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	626.379638671875	2	626.380229	1250.7459	-0.014204	-8.8969E-06	-0.80991	-0.00050731	-0.82411	-0.00051621	626.3796706228852	104.33	1.1031	104.33	103.94	105.04	0					82	30	5	0	0	0	1.0563	1	13425	13425		19.997	0.89325	1	2455700			2204	5474	1361	1364	2813	2813					0.1305614547973164
ALNRCEGI	8	Unmodified	_ALNRCEGI_					0	0	0			REV__ENST00000367857.9_1_6:134495759-134495951:-|nuORF	REV__ENST00000367857.9_1_6:134495759-134495951:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.2248840332031	2	438.22382	874.433086	0.088239	3.8668E-05	-0.020128	-8.8206E-06	0.068111	2.9848E-05	438.22377905840204	34.012	0.81466	34.008	33.676	34.491	-0.0045624					58	20	4	0	0	0	0.94517	1	2495	2495		45.952	1.8352	1	1726200	+		2205	31033	1362	1365	2814	2814					-0.009153011855573823
ALNRLFQQI	9	Unmodified	_ALNRLFQQI_					0	0	0		nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000379452.3_1_3:32795167-32795302:+|nuORF	nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.3071899414062	2	551.822015	1101.62948	-0.032881	-1.8144E-05	-0.68417	-0.00037754	-0.71705	-0.00039568	551.8215544573825	64.424	0.5601	64.424	64.203	64.763	0					33	14	3	0	0	0	0.024405	1	7592	7592		44.117	5.3107	1	382460			2206	18465	1363	1366	2815	2815					0.08272826979850834
ALNRRIQLV	9	Unmodified	_ALNRRIQLV_					0	0	0		ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000167460|P67936-2|TPM4	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.8433837890625	2	541.843282	1081.67201	-0.1856	-0.00010057	0.082627	4.4771E-05	-0.10297	-5.5795E-05	541.8430923189815	17.742	0.38258	17.599	17.368	17.75	-0.14278					14	7	3	0	0	0	0.90698	1	193	193		31.955	5.2619	1	60621			2207	7689	1364	1367	2816	2816					0.1344422210806897
ALNRVFLVKVQ	11	Unmodified	_ALNRVFLVKVQ_					0	0	0			REV__nc|ENSG00000271793|O60506-4|SYNCRIP	REV__nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.78448486328125	3	429.602957	1285.78704	-0.30314	-0.00013023	-2.9143	-0.001252	-3.2174	-0.0013822	429.60160986695587	26.669	0.46652	26.433	26.197	26.663	-0.23603					17	11	2	0	0	0	0.02477	1	1391	1391		17.167	6.5799	1	95376	+		2208	37198	1365	1368	2817	2817					0.15557906519234166
ALNSGILTI	9	Unmodified	_ALNSGILTI_					0	0	0		nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.271240234375	2	451.271293	900.528032	0.66053	0.00029808	-0.33476	-0.00015107	0.32578	0.00014701	451.2710581793827	76.976	1.361	76.976	76.431	77.792	0					48	32	2	0	0	0	0.014013	4	9490	9481;9490;9501;9514		166.78	9.6378	1	1564100			2209	1427	1366	1369	2818;2819;2820;2821	2819					0.07378955557271638
ALNSGILTI	9	Unmodified	_ALNSGILTI_					0	0	0		nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2712707519531	2	451.271293	900.528032	-0.082364	-3.7168E-05	0.42105	0.00019001	0.33869	0.00015284	451.2712656203842	77.172	0.91478	76.961	76.461	77.376	-0.21087					37	21	2	0	0	0	0.014013	3	9481	9481;9492;9504		197.6	19.893	1	1548800			2210	1427	1366	1369	2822;2823;2824	2822					0.07378955557271638
ALNSGILTI	9	Unmodified	_ALNSGILTI_					0	0	0		nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2713623046875	2	451.271293	900.528032	0.24776	0.00011181	0.020768	9.3721E-06	0.26853	0.00012118	451.27117953070876	76.958	1.9129	76.971	75.865	77.777	0.013504					58	46	2	0	0	0	0.015925	2	9419	9419;9434		157.21	9.0025	1	1718100			2211	1427	1366	1369	2825;2826	2825					0.07378955557271638
ALNVASLSV	9	Unmodified	_ALNVASLSV_					0	0	0		ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	ENSG00000101188|ENST00000370501|NTSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7398376464844	2	437.255643	872.496732	-0.10475	-4.58E-05	-0.34916	-0.00015267	-0.4539	-0.00019847	437.25548889557075	67.311	0.4766	67.022	66.791	67.268	-0.28834					24	11	3	0	0	0	0.024261	1	7975	7975		54.776	28.083	1	102190			2212	2290	1367	1370	2827	2827					0.05538382523184282
ALNVVSKAF	9	Unmodified	_ALNVVSKAF_					0	0	0			REV__ENSG00000073670|ENST00000200557|ADAM11	REV__ENSG00000073670|ENST00000200557|ADAM11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.7798156738281	2	474.779285	947.544017	-0.34875	-0.00016558	1.1999	0.00056967	0.85112	0.00040409	474.77968784159407	49.151	0.66563	48.871	48.575	49.24	-0.27977					53	17	4	0	0	0	0.42604	1	4908	4908		64.207	9.431	1	1681600	+		2213	20505	1368	1371	2828	2828					0.06814661794192034
ALPAAASYVE	10	Unmodified	_ALPAAASYVE_					0	0	0			REV__nc|ENSG00000131061|Q9BYN7-2|ZNF341	REV__nc|ENSG00000131061|Q9BYN7-2|ZNF341	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.7229309082031	2	496.258382	990.502212	0.11388	5.6516E-05	3.2941	0.0016347	3.408	0.0016912	496.2600299126836	47.249	1.497	47.096	46.172	47.669	-0.15301					65	41	2	0	0	0	0.03519	1	4792	4792		44.117	12.162	1	457690	+		2214	23186	1369	1372	2829	2829					0.006580613149935743
ALPAELQTTP	10	Unmodified	_ALPAELQTTP_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7841796875	2	520.784764	1039.55498	0.26776	0.00013944	-1.2734	-0.00066318	-1.0057	-0.00052373	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	1.1329	1	13635	13635		27.882	1.1893	1	6875800			2215	10601	1370	1373	2830	2830					0.036780193777985914
ALPAGDHGQSL	11	Unmodified	_ALPAGDHGQSL_					0	0	0			REV__ENSG00000168427|ENST00000409223|KLHL30	REV__ENSG00000168427|ENST00000409223|KLHL30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2694091796875	2	533.269813	1064.52507	-1.0378	-0.00055341	1.129	0.00060204	0.091208	4.8639E-05	533.2703175381987	83.13	0.68382	83.13	82.965	83.649	0					24	15	2	0	0	0	0.82076	1	10391	10391		56.434	3.0823	1	727890	+		2216	26257	1371	1374	2831	2831					-0.004609195675357114
ALPALRERE	9	Unmodified	_ALPALRERE_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8;nc|ENSG00000132716|Q5TAQ9-2|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7672119140625	2	527.803823	1053.59309	-1.9461	-0.0010272	2.9796	0.0015726	1.0335	0.00054548	527.8041463134872	29.949	0.6048	29.949	29.611	30.216	0					27	14	3	0	0	0	0.024427	1	1873	1873		42.396	21.914	1	201870			2217	4647	1372	1375	2832	2832					0.06843950083134587
ALPAPASPAN	10	Unmodified	_ALPAPASPAN_					0	0	0		ENST00000579329.1_1_17:61776106-61776331:-|nuORF	ENST00000579329.1_1_17:61776106-61776331:-|nuORF	ENST00000579329.1_1_17:61776106-61776331:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7445373535156	2	454.745442	907.476331	0.44258	0.00020126	-1.8786	-0.00085427	-1.436	-0.00065301	454.7444987549907	101.14	1.784	101.14	100.7	102.48	0					105	40	5	0	0	0	1.1267	1	12944	12944		29.15	4.9468	1	4485300			2218	17141	1373	1376	2833	2833					0.01889211863363016
ALPAPEIRR	9	Unmodified	_ALPAPEIRR_					0	0	0		ENSG00000173699|ENST00000433428|SPATA3	ENSG00000173699|ENST00000433428|SPATA3	ENSG00000173699|ENST00000433428|SPATA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.28399658203125	2	511.808908	1021.60326	-0.97764	-0.00050037	1.5534	0.00079504	0.57575	0.00029468	511.80877367632417	21.723	0.72501	21.795	21.303	22.028	0.071487					39	14	4	0	0	0	0.024466	1	625	625		42.474	10.52	1	112120			2219	8401	1374	1377	2834	2834					0.09332557808374986
ALPAQPLPLSV	11	Unmodified	_ALPAQPLPLSV_					0	0	0		ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.3323364257812	2	553.334424	1104.6543	-0.10787	-5.9689E-05	-3.4609	-0.001915	-3.5688	-0.0019747	553.3323260230788	95.491	1.2442	95.354	94.938	96.182	-0.13689					88	28	5	0	0	0	1.0344	1	11773	11773		29.17	0	1	4161900			2220	1524	1375	1378	2835	2835					0.10615462062560255
ALPASLLTSA	10	Unmodified	_ALPASLLTSA_					0	0	0			REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2876892089844	2	472.276575	942.538597	-0.5799	-0.00027387	-1.604	-0.00075753	-2.1839	-0.0010314	472.27589720083944	94.21	0.20753	94.073	93.965	94.172	-0.13779					5	4	2	0	0	0	0.03519	1	11611	11611		29.15	0	1	162050	+		2221	35310	1376	1379	2836	2836					0.06502938211701803
ALPASPIKPVN	11	Unmodified	_ALPASPIKPVN_					0	0	0		ENST00000398022.6_1_20:30754611-30754836:+|nuORF	ENST00000398022.6_1_20:30754611-30754836:+|nuORF	ENST00000398022.6_1_20:30754611-30754836:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.830322265625	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0483	1	11129	11129		25.574	3.6142	1	4870500			2222	13611	1377	1380	2837	2837					0.10094577919812764
ALPCPPLK	8	Unmodified	_ALPCPPLK_					0	0	0			REV__ENST00000472200.1_1_3:136537665-136537851:+|nuORF	REV__ENST00000472200.1_1_3:136537665-136537851:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.52203369140625	2	419.746399	837.478245	-0.10871	-4.5629E-05	3.6647	0.0015382	3.556	0.0014926	419.747913740437	24.901	0.48261	24.726	24.468	24.95	-0.17484					17	10	2	0	0	0	0.027866	1	1115	1115		20.482	7.5226	1	105500	+		2223	33202	1378	1381	2838	2838					0.05300549347623473
ALPDQGIAKA	10	Unmodified	_ALPDQGIAKA_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.27960205078125	2	492.279649	982.544745	0.37048	0.00018238	0.16845	8.2927E-05	0.53894	0.00026531	492.27952201868777	41.156	0.77724	41.033	40.584	41.361	-0.12317					48	21	4	0	0	0	0.65479	1	3658	3658		70.816	16.04	1	2709600			2224	1905	1379	1382	2839	2839					0.052774564432297666
ALPEDLVEV	9	Unmodified	_ALPEDLVEV_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000136167|P13796-2|LCP1;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7662353515625	2	492.76604	983.517527	0.15833	7.8017E-05	1.2262	0.00060421	1.3845	0.00068223	492.7666794738476	77.772	2.7036	77.772	77.04	79.744	0					162	64	4	0	0	0	0.31247	4	9573	9564;9573;9597;9620		73.975	8.1716	1	4530600			2225	2372;4991	1380	1383	2840;2841;2842;2843	2841					0.025109281121899585
ALPEDLVEV	9	Unmodified	_ALPEDLVEV_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000136167|P13796-2|LCP1;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.76593017578125	2	492.76604	983.517527	0.56309	0.00027747	0.67355	0.0003319	1.2366	0.00060937	492.76638240520754	77.907	2.5764	77.696	77.08	79.656	-0.21087					157	61	4	0	0	0	0.43973	1	9559	9559		63.306	7.8021	1	4408300			2226	2372;4991	1380	1383	2844	2844					0.025109281121899585
ALPEDLVEV	9	Unmodified	_ALPEDLVEV_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000136167|P13796-2|LCP1;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3;ENSG00000136167|ENST00000323076|LCP1	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.76593017578125	2	492.76604	983.517527	-0.40058	-0.00019739	1.6874	0.0008315	1.2868	0.00063411	492.76688273875067	77.816	2.3666	77.832	77.147	79.514	0.015907					155	56	4	0	0	0	0.15889	3	9509	9497;9509;9533		97.473	28.988	1	4529700			2227	2372;4991	1380	1383	2845;2846;2847	2846					0.025109281121899585
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.7850952148438	2	516.784233	1031.55391	-0.38774	-0.00020038	0.1743	9.0074E-05	-0.21344	-0.0001103	516.7842608322572	94.056	1.8442	94.056	93.499	95.343	-0.00022888					113	43	5	0	0	0	0.08613	3	11921	11921;11933;11945		115.46	19.644	1	6488700			2228	4449	1381	1384	2848;2849;2850	2848					0.039398050088948366
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.7844848632812	2	516.784233	1031.55391	-1.1224	-0.00058004	0.78374	0.00040502	-0.33867	-0.00017502	516.7845845315921	94.106	1.6266	94.112	93.73	95.357	0.0059814					96	38	5	0	0	0	0.08613	4	11898	11873;11886;11898;11924		115.46	29.805	1	6812900			2229	4449	1381	1384	2851;2852;2853;2854	2853					0.039398050088948366
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.7843627929688	2	516.784233	1031.55391	-1.0648	-0.00055026	0.79839	0.0004126	-0.26638	-0.00013766	516.7845295297542	93.976	0.97617	93.836	93.528	94.504	-0.13995					46	22	3	0	0	0	0.4752	1	11571	11571		60.972	0	1	945210			2230	4449	1381	1384	2855	2855					0.039398050088948366
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7840576171875	2	516.784233	1031.55391	0.3794	0.00019607	-0.56346	-0.00029119	-0.18406	-9.5121E-05	516.7838494502815	93.986	0.9267	93.864	93.497	94.423	-0.12215					48	21	3	0	0	0	0.27161	2	11580	11580;11593		79.451	16.145	1	1053700			2231	4449	1381	1384	2856;2857	2856					0.039398050088948366
ALPEIFTEL	9	Unmodified	_ALPEIFTEL_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.784423828125	2	516.784233	1031.55391	-0.035681	-1.8439E-05	0.06096	3.1503E-05	0.025279	1.3064E-05	516.784072834289	94.042	0.97518	93.894	93.566	94.541	-0.14771					53	22	5	0	0	0	0.33245	1	11570	11570		71.296	7.9894	1	1087900			2232	4449	1381	1384	2858	2858					0.039398050088948366
ALPEIVPK	8	Unmodified	_ALPEIVPK_					0	0	0		ENST00000526968.1_3_11:77185402-77185564:-|nuORF	ENST00000526968.1_3_11:77185402-77185564:-|nuORF	ENST00000526968.1_3_11:77185402-77185564:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.5411071777344	2	433.770929	865.527304	-0.11868	-5.1478E-05	-3.1234	-0.0013548	-3.2421	-0.0014063	433.7695146168081	20.799	0.34758	20.575	20.315	20.663	-0.22344					10	6	2	0	0	0	0.027866	1	552	552		12.207	0	1	7323.8			2233	16136	1382	1385	2859	2859					0.08916160908222537
ALPEIVPK	8	Unmodified	_ALPEIVPK_					0	0	0		ENST00000526968.1_3_11:77185402-77185564:-|nuORF	ENST00000526968.1_3_11:77185402-77185564:-|nuORF	ENST00000526968.1_3_11:77185402-77185564:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	433.770929	865.527304	0.81856	0.00035507	-3.837	-0.0016644	-3.0185	-0.0013093	433.76897938555567	20.705	0.24625	20.509	20.385	20.632	-0.19577	-0.033323	-0.00044794	NaN	3.41	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8056			2234	16136	1382	1385							0.08916160908222537
ALPEPNQKNL	10	Unmodified	_ALPEPNQKNL_					0	0	0			REV__ENST00000551848.1_1_12:32259795-32260041:+|nuORF	REV__ENST00000551848.1_1_12:32259795-32260041:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3115234375	2	562.308938	1122.60332	0.14969	8.4173E-05	3.3598	0.0018892	3.5095	0.0019734	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.55353	2	10962	10962;11029		82.241	2.5279	1	3232300	+		2235	34941	1383	1386	2860;2861	2860					0.04692513017721467
ALPEPNQKNL	10	Unmodified	_ALPEPNQKNL_					0	0	0			REV__ENST00000551848.1_1_12:32259795-32260041:+|nuORF	REV__ENST00000551848.1_1_12:32259795-32260041:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3106079101562	2	562.308938	1122.60332	0.47833	0.00026897	3.0527	0.0017165	3.531	0.0019855	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.28861	1	10951	10951		110.12	5.3733	1	3090500	+		2236	34941	1383	1386	2862	2862					0.04692513017721467
ALPEPNQKNL	10	Unmodified	_ALPEPNQKNL_					0	0	0			REV__ENST00000551848.1_1_12:32259795-32260041:+|nuORF	REV__ENST00000551848.1_1_12:32259795-32260041:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3120727539062	2	562.308938	1122.60332	0.50693	0.00028505	2.7973	0.0015729	3.3042	0.001858	562.3104344464497	87.379	0.75547	87.243	86.926	87.682	-0.13613					47	17	4	0	0	0	0.69662	1	10633	10633		67.494	1.0644	1	923100	+		2237	34941	1383	1386	2863	2863					0.04692513017721467
ALPFLMRGH	9	Unmodified	_ALPFLMRGH_					0	0	0		ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7009887695312	2	521.286754	1040.55896	-0.46468	-0.00024223	2.083	0.0010859	1.6184	0.00084363	521.2875849337807	32.996	0.35748	32.831	32.72	33.077	-0.16565					11	8	2	0	0	0	0.024418	1	2298	2298		46.766	7.5136	1	69086			2238	10833	1384	1387	2864	2864					0.0402983039055016
ALPFLMRGH	9	Unmodified	_ALPFLMRGH_					0	0	0		ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.286754	1040.55896	-0.030939	-1.6128E-05	-5.525	-0.0028801	-5.5559	-0.0028962	521.7853798145469	32.784	0.1937	32.847	32.69	32.883	0.062889	0.0046971	-0.0055133	NaN	46.766	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30263			2239	10833	1384	1387							0.0402983039055016
ALPFLMRGH	9	Unmodified	_ALPFLMRGH_					0	0	0		ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.286754	1040.55896	-0.46465	-0.00024222	1.6634	0.0008671	1.1987	0.00062488	521.2873430696002	33.064	0.4479	32.833	32.627	33.075	-0.23107	-0.0091988	0.0019811	NaN	46.766	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64371			2240	10833	1384	1387							0.0402983039055016
ALPFLMRGH	9	Unmodified	_ALPFLMRGH_					0	0	0		ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.286754	1040.55896	0.26486	0.00013807	2.2721	0.0011844	2.5369	0.0013225	521.2876421027655	33.058	0.28771	32.858	32.69	32.977	-0.20019	0.015782	0.0026157	NaN	46.766	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78807			2241	10833	1384	1387							0.0402983039055016
ALPGLGMPL	9	Unmodified	_ALPGLGMPL_					0	0	0			REV__ENSG00000100346|ENST00000402142|CACNA1I	REV__ENSG00000100346|ENST00000402142|CACNA1I	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.765380859375	2	434.751682	867.48881	0.48697	0.00021171	-1.4358	-0.00062421	-0.94882	-0.0004125	434.75242859300823	54.651	0.18174	54.749	54.626	54.807	0.098015					7	4	2	0	0	0	0.023868	1	5921	5921		72.62	9.6415	1	47944	+		2242	21095	1385	1388	2865	2865					0.04976532002069689
ALPGPLHLV	9	Unmodified	_ALPGPLHLV_					0	0	0		ENST00000301015.13_2_16:88804637-88805031:-|nuORF	ENST00000301015.13_2_16:88804637-88805031:-|nuORF	ENST00000301015.13_2_16:88804637-88805031:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.26922607421875	2	458.78437	915.554188	-0.37774	-0.0001733	3.9965	0.0018335	3.6188	0.0016602	458.78607511998115	36.496	0.41534	36.454	36.315	36.73	-0.042454					18	10	2	0	0	0	0.024541	1	2903	2903		8.8223	0	1	80656			2243	11918	1386	1389	2866	2866					0.09303269519421065
ALPGPTILDLR	11	Unmodified	_ALPGPTILDLR_					0	0	0		HSPB3|p.V43L|1|0.09|ENSG00000169271|chr5:54455916-54455916|G/T|missense_variant	HSPB3|p.V43L|1|0.09|ENSG00000169271|chr5:54455916-54455916|G/T|missense_variant	HSPB3|p.V43L|1|0.09|ENSG00000169271|chr5:54455916-54455916|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.3500366210938	2	583.350606	1164.68666	-1.7055	-0.0009949	-1.5211	-0.00088732	-3.2266	-0.0018822	583.3496418186248	105.95	0.48483	105.82	105.56	106.04	-0.1328					61	20	4	0	0	0	1.0592	1	13199	13199		22.58	0	1	702580			2244	17753	1387	1390	2867	2867					0.11090249465542001
ALPGPVRSL	9	Unmodified	_ALPGPVRSL_					0	0	0		ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7455749511719	2	455.279452	908.544351	-0.061711	-2.8096E-05	-0.95945	-0.00043682	-1.0212	-0.00046491	455.27882784789784	53.683	0.48996	53.779	53.481	53.971	0.095665					20	13	2	0	0	0	0.024263	1	5780	5780		42.396	5.237	1	286370			2245	16072	1388	1391	2868	2868					0.08642081514040001
ALPGPVRSL	9	Unmodified	_ALPGPVRSL_					0	0	0		ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	455.279452	908.544351	0.56145	0.00025562	-1.6601	-0.00075579	-1.0986	-0.00050017	455.2784220333192	53.88	0.5339	53.88	53.509	54.043	0	0.051638	-0.00034632	NaN	42.396	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308670			2246	16072	1388	1391							0.08642081514040001
ALPGPVRSL	9	Unmodified	_ALPGPVRSL_					0	0	0		ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	455.279452	908.544351	-0.048608	-2.213E-05	-1.1917	-0.00054256	-1.2403	-0.00056469	455.27863766244843	53.975	0.63731	53.827	53.383	54.02	-0.14723	-0.0014386	8.0144E-05	NaN	42.396	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252380			2247	16072	1388	1391							0.08642081514040001
ALPHTLLGQL	10	Unmodified	_ALPHTLLGQL_					0	0	0		ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8157348632812	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	1.0393	5	10616	10604;10616;10737;10749;10761		40.778	3.6629	1	5249700			2248	12457	1389	1392	2869;2870;2871;2872;2873	2870					0.09498308748334239
ALPHTLLGQL	10	Unmodified	_ALPHTLLGQL_					0	0	0		ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8160400390625	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.0992	1	10774	10774		32.812	3.6424	1	4853400			2249	12457	1389	1392	2874	2874					0.09498308748334239
ALPHTLLGQL	10	Unmodified	_ALPHTLLGQL_					0	0	0		ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8167114257812	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.0393	1	10676	10676		40.778	1.5253	1	4521600			2250	12457	1389	1392	2875	2875					0.09498308748334239
ALPILLLLLAL	11	Unmodified	_ALPILLLLLAL_					0	0	0		ENST00000216044.9_1_22:39127156-39127294:+|nuORF	ENST00000216044.9_1_22:39127156-39127294:+|nuORF	ENST00000216044.9_1_22:39127156-39127294:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.81396484375	2	581.91231	1161.81007	-0.12714	-7.3982E-05	-0.79574	-0.00046305	-0.92288	-0.00053703	581.9113459233322	20.054	0.18529	19.887	19.816	20.002	-0.16774					5	3	2	0	0	0	0.024835	1	514	514		11.511	0	1	21192			2251	11153	1390	1393	2876	2876					0.23563532584012137
ALPISEIKG	9	Unmodified	_ALPISEIKG_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.25091552734375	2	464.279118	926.543683	-0.073632	-3.4186E-05	-0.50336	-0.0002337	-0.577	-0.00026789	464.2792536356265	47.756	0.12288	47.815	47.739	47.862	0.059097					6	3	2	0	0	0	0.024457	1	4750	4750		37.159	11.709	1	649190	+		2252	20797	1391	1394	2877	2877					0.07747242074333371
ALPISFGDEY	10	Unmodified	_ALPISFGDEY_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2294311523438	2	556.268947	1110.52334	-0.34857	-0.0001939	0.87184	0.00048498	0.52327	0.00029108	556.2690703748881	43.408	0.58218	43.295	43.071	43.653	-0.11253					26	15	3	0	0	0	0.03519	1	3948	3948		44.117	0	1	374500	+		2253	21946	1392	1395	2878	2878					-0.02749973376126036
ALPISFGDEY	10	Unmodified	_ALPISFGDEY_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2294921875	2	556.268947	1110.52334	-0.70892	-0.00039435	0.041521	2.3097E-05	-0.6674	-0.00037126	556.2686527694474	43.587	0.46487	43.35	43.174	43.639	-0.23736					21	12	2	0	0	0	0.03519	1	3966	3966		53.351	5.6941	1	424340	+		2254	21946	1392	1395	2879	2879					-0.02749973376126036
ALPKQGQP	8	Unmodified	_ALPKQGQP_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.5302734375	2	419.742702	837.470852	-0.29523	-0.00012392	0.70647	0.00029654	0.41124	0.00017261	419.7429529654828	23.27	0.3896	23.09	22.929	23.318	-0.17989					14	8	2	0	0	0	0.027866	1	900	900		13.775	0	1	158100	+		2255	21692	1393	1396	2880	2880					0.045615330715691016
ALPLLADIG	9	Unmodified	_ALPLLADIG_					0	0	0		COL19A1|p.G686A|1|0.22|ENSG00000082293|chr6:70151416-70151416|G/C|missense_variant	COL19A1|p.G686A|1|0.22|ENSG00000082293|chr6:70151416-70151416|G/C|missense_variant	COL19A1|p.G686A|1|0.22|ENSG00000082293|chr6:70151416-70151416|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7681884765625	2	441.768386	881.522219	0.10055	4.4418E-05	-1.228	-0.00054249	-1.1275	-0.00049807	441.76794852794825	102.93	1.5122	102.8	102.45	103.96	-0.12723					102	35	5	0	0	0	0.88411	1	12819	12819		33.516	6.7195	1	19625000			2256	468	1394	1397	2881	2881					0.07671857045613706
ALPLLTFEV	9	Unmodified	_ALPLLTFEV_					0	0	0			REV__ENST00000486254.3_1_2:159526197-159533456:+|nuORF	REV__ENST00000486254.3_1_2:159526197-159533456:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.28802490234375	2	501.797143	1001.57973	-1.1182	-0.00056109	-1.6241	-0.00081494	-2.7422	-0.001376	501.7959301904967	44.097	0.31805	43.953	43.781	44.099	-0.14471					11	8	2	0	0	0	0.024294	1	4169	4169		29.15	0	1	252480	+		2257	33581	1395	1398	2882	2882					0.07900699251194965
ALPLSSLTY	9	Unmodified	_ALPLSSLTY_					0	0	0			REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	482.7714538574219	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.849	1	95.856	95.356	96.356	0.0065079								0	0	0	0.59296	1	12178	12178		40.573	3.4135	1		+		2258	35846	1396	1399	2883	2883					0.04447535837414307
ALPLVVKVVD	10	Unmodified	_ALPLVVKVVD_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2682495117188	2	526.839342	1051.66413	-0.40552	-0.00021364	-0.011097	-5.8464E-06	-0.41662	-0.00021949	526.839132165196	66.244	0.39474	66.002	65.867	66.262	-0.24145					16	9	2	0	0	0	0.03519	1	7619	7619		34.173	17.699	1	95646			2259	10844	1397	1400	2884	2884					0.14036650067941991
ALPMLTLAAL	10	Unmodified	_ALPMLTLAAL_					0	0	0			REV__ENSG00000156097|ENST00000527748|GPR61	REV__ENSG00000156097|ENST00000527748|GPR61	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3072509765625	2	507.306821	1012.59909	-1.0431	-0.00052917	3.1395	0.0015927	2.0964	0.0010635	507.3085410053728	43.586	1.6368	43.367	43.032	44.668	-0.21939					155	44	6	0	0	0	0.72219	1	4062	4062		65.803	2.4969	1	106880000	+		2260	25050	1398	1401	2885	2885					0.09329332270431223
ALPNSGSPPL	10	Unmodified	_ALPNSGSPPL_					0	0	0		ENST00000497232.5_1_2:74702580-74708169:-|nuORF	ENST00000497232.5_1_2:74702580-74708169:-|nuORF	ENST00000497232.5_1_2:74702580-74708169:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7584533691406	2	476.758549	951.502546	0.34901	0.00016639	-1.4907	-0.00071071	-1.1417	-0.00054432	476.75772494847956	103.11	2.084	103.12	102.24	104.32	0.0054245					130	51	5	0	0	0	1.0002	1	13178	13178		45.972	3.5761	1	5192800			2261	15586	1399	1402	2886	2886					0.024854810348642786
ALPNVYEVI	9	Unmodified	_ALPNVYEVI_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.284423828125	2	509.2844	1016.55425	-0.58778	-0.00029935	0.25455	0.00012964	-0.33323	-0.00016971	509.2845043531119	82.918	0.68777	82.918	82.535	83.223	0					30	15	3	0	0	0	0.29158	1	10366	10366		76.774	3.8949	1	1068300			2262	2171	1400	1403	2887	2887					0.04663224728756177
ALPNVYEVI	9	Unmodified	_ALPNVYEVI_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.2840881347656	2	509.2844	1016.55425	1.2894	0.00065669	-1.6793	-0.00085526	-0.38989	-0.00019857	509.28354772864924	83.027	0.64296	82.937	82.529	83.172	-0.090454					25	14	3	0	0	0	0.29158	2	10344	10332;10344		76.774	7.9873	1	1238800			2263	2171	1400	1403	2888;2889	2889					0.04663224728756177
ALPPIVDSL	9	Unmodified	_ALPPIVDSL_					0	0	0		ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2314758300781	2	462.773668	923.532783	-0.89046	-0.00041208	-2.4546	-0.0011359	-3.3451	-0.001548	462.7724925505338	35.774	0.68844	35.774	35.306	35.994	0					26	17	3	0	0	0	0.024497	1	2755	2755		28.254	8.8943	1	545040			2264	15256	1401	1404	2890	2890					0.06795839700043871
ALPPIVDSL	9	Unmodified	_ALPPIVDSL_					0	0	0		ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.773668	923.532783	-0.47185	-0.00021836	-2.2787	-0.0010545	-2.7506	-0.0012729	462.77245638677834	35.646	0.46497	35.43	35.176	35.641	-0.21555	-0.12445	0.00037915	NaN	35.201	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475450			2265	15256	1401	1404							0.06795839700043871
ALPPIVDSL	9	Unmodified	_ALPPIVDSL_					0	0	0		ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.773668	923.532783	-0.30935	-0.00014316	-2.4815	-0.0011484	-2.7909	-0.0012915	462.77235120767915	35.666	0.43054	35.453	35.154	35.584	-0.21246	-0.10104	0.00019148	NaN	35.201	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603060			2266	15256	1401	1404							0.06795839700043871
ALPPIVDSL	9	Unmodified	_ALPPIVDSL_					0	0	0		ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	ENST00000482429.1_1_6:31548488-31549450:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.773668	923.532783	-0.38494	-0.00017814	-2.6263	-0.0012154	-3.0112	-0.0013935	462.77231746353965	35.544	0.48637	35.357	35.1	35.587	-0.18675	-0.19711	5.7473E-05	NaN	35.201	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	754290			2267	15256	1401	1404							0.06795839700043871
ALPPKKVS	8	Unmodified	_ALPPKKVS_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5302429199219	2	420.271096	838.527639	0.32511	0.00013663	0.0090264	3.7935E-06	0.33414	0.00014043	420.27094627396946	22.959	0.60795	22.757	22.453	23.061	-0.20193					29	12	3	0	0	0	0.027866	1	895	895		25.45	0	1	279470	+		2268	26015	1402	1405	2891	2891					0.10191580628088559
ALPPLTIL	8	Unmodified	_ALPPLTIL_					0	0	0			REV__ENST00000367211.4_2_1:219786162-219786348:-|nuORF	REV__ENST00000367211.4_2_1:219786162-219786348:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2459411621094	2	419.275847	836.537141	-0.28528	-0.00011961	-2.0886	-0.00087571	-2.3739	-0.00099532	419.2747844493877	20.408	0.63772	20.303	19.932	20.569	-0.10477					22	12	3	0	0	0	0.027866	1	502	502		23.037	0	1	58561	+		2269	31009	1403	1406	2892	2892					0.11233348913617647
ALPPSLTAI	9	Unmodified	_ALPPSLTAI_					0	0	0		ENST00000479767.1_1_9:139651724-139651862:-|nuORF	ENST00000479767.1_1_9:139651724-139651862:-|nuORF	ENST00000479767.1_1_9:139651724-139651862:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7680969238281	2	441.768386	881.522219	-0.17194	-7.5957E-05	-0.7357	-0.00032501	-0.90764	-0.00040097	441.7681216130439	102.94	1.5731	102.81	102.45	104.03	-0.12783					93	37	5	0	0	0	0.78069	1	12791	12791		40.573	0	1	25733000			2270	15180	1404	1407	2893	2893					0.07671857045602337
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.78436279296875	2	455.784036	909.553519	0.69998	0.00031904	-0.50782	-0.00023146	0.19215	8.758E-05	455.7836617650041	77.346	1.2039	77.346	76.998	78.202	0					82	28	5	0	0	0	0.016588	5	9557	9528;9545;9557;9569;9580		153.88	47.47	1	4333100			2271	6475	1405	1408	2894;2895;2896;2897;2898	2896					0.09512430079689693
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.7843017578125	2	455.784036	909.553519	0.36059	0.00016435	-0.22891	-0.00010433	0.13168	6.002E-05	455.7837963411481	77.535	1.3251	77.324	76.954	78.279	-0.21088					84	31	4	0	0	0	0.033883	4	9544	9522;9544;9557;9570		138.48	41.684	1	4695500			2272	6475	1405	1408	2899;2900;2901;2902	2900					0.09512430079689693
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.78411865234375	2	455.784036	909.553519	0.11055	5.0387E-05	0.0099834	4.5503E-06	0.12053	5.4937E-05	455.78392993826975	77.395	1.2119	77.408	77.021	78.232	0.013496					79	28	4	0	0	0	0.040175	6	9473	9452;9463;9473;9484;9496;9510		133.47	37.628	1	4585000			2273	6475	1405	1408	2903;2904;2905;2906;2907;2908	2905					0.09512430079689693
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.7839050292969	2	455.784036	909.553519	0.31565	0.00014387	0.003183	1.4507E-06	0.31883	0.00014532	455.7838809373652	77.555	1.0739	77.293	77.003	78.077	-0.26202					59	25	4	0	0	0	0.062871	4	9224	9202;9213;9224;9237		123.99	44.05	1	2401400			2274	6475	1405	1408	2909;2910;2911;2912	2911					0.09512430079689693
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.78399658203125	2	455.784036	909.553519	0.85829	0.0003912	-0.58215	-0.00026533	0.27615	0.00012586	455.7836294922699	77.496	1.0292	77.253	77.009	78.038	-0.24232					62	24	4	0	0	0	0.062871	5	9245	9211;9220;9232;9245;9259		123.99	35.346	1	2367900			2275	6475	1405	1408	2913;2914;2915;2916;2917	2916					0.09512430079689693
ALPPVLTTV	9	Unmodified	_ALPPVLTTV_					0	0	0		ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.78363037109375	2	455.784036	909.553519	-0.24577	-0.00011202	0.47819	0.00021795	0.23243	0.00010594	455.78408210562	77.444	0.92148	77.282	76.986	77.908	-0.16196					54	21	4	0	0	0	0.088511	5	9206	9184;9193;9206;9218;9238		114.59	34.647	1	1947600			2276	6475	1405	1408	2918;2919;2920;2921;2922	2920					0.09512430079689693
ALPQGPRAPGP	11	Unmodified	_ALPQGPRAPGP_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7981567382812	2	530.79854	1059.58253	2.6618	0.0014129	-2.4845	-0.0013188	0.17729	9.4107E-05	530.79722901441	19.625	2.1026	19.691	18.31	20.412	0.066195					65	42	2	0	0	0	1.0483	1	248	248		25.574	7.2496	1	66700			2277	8891	1406	1409	2923	2923					0.055119674287197995
ALPQGPRAPGP	11	Unmodified	_ALPQGPRAPGP_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.79854	1059.58253	-0.18523	-9.832E-05	0.714	0.00037899	0.52877	0.00028067	530.7989472700503	19.6	0.61246	19.6	19.268	19.88	0	-0.058072	0.0025435	NaN	25.574	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33555			2278	8891	1406	1409							0.055119674287197995
ALPQGPRAPGP	11	Unmodified	_ALPQGPRAPGP_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.79854	1059.58253	-0.5829	-0.0003094	0.24035	0.00012758	-0.34255	-0.00018183	530.7986314958687	19.803	0.61895	19.684	19.397	20.016	-0.11872	0.025495	0.0020407	NaN	25.574	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46060			2279	8891	1406	1409							0.055119674287197995
ALPQIAAKI	9	Unmodified	_ALPQIAAKI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.797607421875	2	462.797478	923.580402	0.45891	0.00021238	-0.40123	-0.00018569	0.057676	2.6692E-05	462.79726538143274	58.611	1.1633	58.611	58.056	59.22	0					73	31	4	0	0	0	0.20967	3	6650	6650;6662;6677		87.754	13.78	1	6820600			2280	4623	1407	1410	2924;2925;2926	2924					0.11555538690890899
ALPQIAAKI	9	Unmodified	_ALPQIAAKI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.798583984375	2	462.797478	923.580402	1.0133	0.00046895	-0.88308	-0.00040869	0.13022	6.0264E-05	462.7970051402702	58.898	1.0561	58.711	58.275	59.331	-0.18705					66	28	4	0	0	0	0.4752	1	6686	6686		60.972	5.4677	1	6423900			2281	4623	1407	1410	2927	2927					0.11555538690890899
ALPQIAAKI	9	Unmodified	_ALPQIAAKI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7977600097656	2	462.797478	923.580402	0.97092	0.00044934	-0.98655	-0.00045657	-0.015634	-7.2355E-06	462.79700159247943	58.452	1.1645	58.543	58.118	59.283	0.091217					68	31	4	0	0	0	0.096521	3	6561	6540;6551;6561		111.65	21.27	1	6265200			2282	4623	1407	1410	2928;2929;2930	2930					0.11555538690890899
ALPQLPAQP	9	Unmodified	_ALPQLPAQP_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.3056640625	2	467.77146	933.528367	0.36586	0.00017114	-0.37786	-0.00017675	-0.012	-5.613E-06	467.7710207423075	53.048	0.39026	53.143	53.017	53.407	0.095669					17	10	2	0	0	0	0.024487	1	5641	5641		31.955	11.473	1	193700	+		2283	25862	1408	1411	2931	2931					0.05894375277136987
ALPQPAQSL	9	Unmodified	_ALPQPAQSL_					0	0	0			REV__ENSG00000197019|ENST00000357949|SERTAD1	REV__ENSG00000197019|ENST00000357949|SERTAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.7608947753906	2	462.761092	923.507631	-0.53617	-0.00024812	-0.087542	-4.0511E-05	-0.62372	-0.00028863	462.7610422673755	49.052	1.4449	48.772	48.394	49.839	-0.27977					106	38	5	0	0	0	0.20967	1	4912	4912		87.754	0	1	26258000	+		2284	28253	1409	1412	2932	2932					0.04281784897466423
ALPQVVAVDI	10	Unmodified	_ALPQVVAVDI_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8055419921875	2	512.8055	1023.59645	-1.0505	-0.00053872	1.0194	0.00052274	-0.031165	-1.5982E-05	512.8058519942463	80.501	0.71404	80.349	79.966	80.68	-0.15169					43	16	4	0	0	0	0.79525	1	9961	9961		60.972	6.2496	1	810820			2285	1061	1410	1413	2933	2933					0.08559200137142398
ALPQVVAVDI	10	Unmodified	_ALPQVVAVDI_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.8055	1023.59645	-0.64515	-0.00033084	0.75854	0.00038898	0.11339	5.8148E-05	512.805653416179	80.279	0.71523	80.279	79.911	80.626	0	-0.040592	-0.00017848	NaN	60.972	47	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910150			2286	1061	1410	1413							0.08559200137142398
ALPSQQALP	9	Unmodified	_ALPSQQALP_					0	0	0			REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7719421386719	2	462.761092	923.507631	0.091911	4.2533E-05	-1.5604	-0.00072208	-1.4685	-0.00067954	462.7602661494293	98.45	0.67342	98.45	98.105	98.779	0					32	15	3	0	0	0	0.024323	1	12600	12600		53.351	0	1	231820	+		2287	27931	1411	1414	2934	2934					0.04281784897466423
ALPTLIPSV	9	Unmodified	_ALPTLIPSV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.7841796875	2	455.784036	909.553519	0.36059	0.00016435	-0.22891	-0.00010433	0.13168	6.002E-05	455.7837963411481	77.535	1.3251	77.324	76.954	78.279	-0.21088					84	31	4	0	0	0	0.11848	1	9534	9534		106.42	5.2036	1	4695500			2288	2042	1412	1415	2935	2935					0.0951243007971243
ALPTLIPSV	9	Unmodified	_ALPTLIPSV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.7841796875	2	455.784036	909.553519	-0.19642	-8.9527E-05	0.60223	0.00027449	0.4058	0.00018496	455.784131845542	84.384	0.87892	84.411	84.075	84.954	0.026558					46	20	3	0	0	0	0.27161	1	10495	10495		79.451	21.64	1	1087900			2289	2042	1412	1415	2936	2936					0.0951243007971243
ALPTLIPSV	9	Unmodified	_ALPTLIPSV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.783935546875	2	455.784036	909.553519	0.50532	0.00023032	-0.39617	-0.00018057	0.10915	4.975E-05	455.7837021857998	84.383	0.81615	84.245	83.889	84.705	-0.13789					42	18	3	0	0	0	0.17455	1	10192	10192		94.006	33.712	1	636520			2290	2042	1412	1415	2937	2937					0.0951243007971243
ALPTLIPSV	9	Unmodified	_ALPTLIPSV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	455.784036	909.553519	0.5792	0.00026399	-0.1473	-6.7136E-05	0.4319	0.00019685	455.7837777141452	84.481	0.91209	84.481	84.128	85.04	0	0.1382	-8.9168E-05	NaN	94.006	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	966790			2291	2042	1412	1415							0.0951243007971243
ALPTLIPSV	9	Unmodified	_ALPTLIPSV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	455.784036	909.553519	-0.55227	-0.00025172	0.93816	0.0004276	0.38589	0.00017588	455.784251977056	84.488	0.7524	84.415	84.048	84.8	-0.072769	0.071974	0.00090031	NaN	94.006	53	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	928660			2292	2042	1412	1415							0.0951243007971243
ALPTLIPSV	9	Unmodified	_ALPTLIPSV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.784036	909.553519	0.66515	0.00030316	-0.23087	-0.00010522	0.43428	0.00019794	455.78377238340994	84.449	0.85298	84.246	83.82	84.673	-0.20329	-0.096925	-0.00016534	NaN	94.006	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612000			2293	2042	1412	1415							0.0951243007971243
ALPTLIPSV	9	Unmodified	_ALPTLIPSV_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	455.784036	909.553519	0.66789	0.00030442	-0.4943	-0.0002253	0.17359	7.912E-05	455.7836568930156	84.419	0.68466	84.26	83.888	84.573	-0.15869	-0.08277	-0.00040549	NaN	94.006	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638000			2294	2042	1412	1415							0.0951243007971243
ALPTPQAQQL	10	Unmodified	_ALPTPQAQQL_					0	0	0		nc|ENSG00000092330|Q9BSI4-2|TINF2;ENSG00000092330|ENST00000267415|TINF2	nc|ENSG00000092330|Q9BSI4-2|TINF2	nc|ENSG00000092330|Q9BSI4-2|TINF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2351684570312	2	533.798206	1065.58186	-0.82614	-0.00044099	1.4943	0.00079767	0.66818	0.00035667	533.7989459512978	58.174	0.94553	57.999	57.788	58.734	-0.1749					37	25	2	0	0	0	0.03519	1	6620	6620		33.922	0	1	319680			2295	1988	1413	1416	2938	2938					0.05169127988983746
ALPVSDAPLAS	11	Unmodified	_ALPVSDAPLAS_					0	0	0		ENST00000529712.5_1_11:47736424-47736610:-|nuORF	ENST00000529712.5_1_11:47736424-47736610:-|nuORF	ENST00000529712.5_1_11:47736424-47736610:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7821044921875	2	520.784764	1039.55498	-0.25442	-0.0001325	-1.0335	-0.00053821	-1.2879	-0.00067071	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	0.98904	1	13257	13257		39.253	3.6345	1	3782600			2296	16213	1414	1417	2939	2939					0.036780193777985914
ALPVSDAPLAS	11	Unmodified	_ALPVSDAPLAS_					0	0	0		ENST00000529712.5_1_11:47736424-47736610:-|nuORF	ENST00000529712.5_1_11:47736424-47736610:-|nuORF	ENST00000529712.5_1_11:47736424-47736610:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7840576171875	2	520.784764	1039.55498	-0.95638	-0.00049807	-0.21074	-0.00010975	-1.1671	-0.00060781	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	1.018	1	13264	13264		32.812	6.1195	1	3485700			2297	16213	1414	1417	2940	2940					0.036780193777985914
ALPWVGEP	8	Unmodified	_ALPWVGEP_					0	0	0		ENST00000237512.4_1_6:109169973-109175442:+|nuORF	ENST00000237512.4_1_6:109169973-109175442:+|nuORF	ENST00000237512.4_1_6:109169973-109175442:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	434.731803	867.449054	-0.23088	-0.00010037	-4.3519	-0.0018919	-4.5828	-0.0019923	434.72987220217243	36.6	0.48961	36.557	36.28	36.77	-0.042458					16	12	2	0	0	0	0.027866	1	2872	2872		14.664	0	1	93201			2298	11258	1415	1418	2941	2941					0.010027283229987916
ALQALVVTL	9	Unmodified	_ALQALVVTL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2976379394531	2	464.29731	926.580068	0.43999	0.00020429	-0.21771	-0.00010108	0.22228	0.0001032	464.2971468992654	61.625	0.62707	61.696	61.434	62.061	0.071125					34	16	4	0	0	0	0.16468	1	7065	7065		96.19	8.494	1	2065500			2299	3392	1416	1419	2942	2942					0.1138411897103424
ALQANIKAQ	9	Unmodified	_ALQANIKAQ_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3;TTC3|p.S378Lfs*27|1|0.14|ENSG00000182670|chr21:37124639-37124657|TATCAGCACCTATATTTAC/-|frameshift_variant	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.8033447265625	2	478.779816	955.545079	0.41439	0.0001984	0.1776	8.5031E-05	0.59199	0.00028343	478.77950536159216	52.454	0.82938	52.306	51.777	52.607	-0.14723					41	21	2	0	0	0	0.024354	1	5615	5615		38.806	25.847	1	926900			2300	9153	1417	1420	2943	2943					0.0655287616308442
ALQATRAVI	9	Unmodified	_ALQATRAVI_					0	0	0			REV__nc|ENSG00000164597|Q9UP83-3|COG5	REV__nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7909851074219	2	471.790184	941.565815	-0.2047	-9.6575E-05	-0.54393	-0.00025662	-0.74863	-0.0003532	471.7899415927755	47.76	1.308	47.819	47.554	48.862	0.059097					114	37	5	0	0	0	0.26966	1	4763	4763		79.713	5.4575	1	46020000	+		2301	25774	1418	1421	2944	2944					0.0926946654275298
ALQCLKYKKL	10	Unmodified	_ALQCLKYKKL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3668212890625	2	604.365201	1206.71585	-0.63259	-0.00038232	3.1909	0.0019285	2.5583	0.0015461	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	1.1295	1	12903	12903		20.947	4.2295	1	4804600			2302	7487	1419	1422	2945	2945					0.12076070490184065
ALQDQVLSI	9	Unmodified	_ALQDQVLSI_					0	0	0			REV__ENSG00000214367|ENST00000443786|HAUS3	REV__ENSG00000214367|ENST00000443786|HAUS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7791442871094	2	493.779482	985.544411	-0.97175	-0.00047983	1.2487	0.00061657	0.27692	0.00013674	493.78000861403234	57.592	0.72339	57.414	56.991	57.714	-0.17775					31	18	2	0	0	0	0.22902	1	6284	6284		85.161	4.7062	1	2839700	+		2303	28777	1421	1423	2946	2946					0.05106036723384477
ALQDSILAR	9	Unmodified	_ALQDSILAR_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3060302734375	2	493.785099	985.555644	-0.365	-0.00018023	-2.4136	-0.0011918	-2.7786	-0.001372	493.78405586131254	85.297	0.54224	85.24	84.939	85.481	-0.05761					19	12	2	0	0	0	0.024288	1	10643	10643		62.107	0	1	170400			2304	6301	1422	1424	2947	2947					0.06228858817530636
ALQEELAGNG	10	Unmodified	_ALQEELAGNG_					0	0	0			REV__ENSG00000144668|ENST00000264741|ITGA9	REV__ENSG00000144668|ENST00000264741|ITGA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8052978515625	2	501.248546	1000.48254	0.078564	3.938E-05	-1.4376	-0.0007206	-1.3591	-0.00068122	501.2470833196972	42.535	0.49911	42.561	42.255	42.754	0.026012					18	13	2	0	0	0	0.03519	1	3830	3830		36.447	0	1	122890	+		2305	24349	1423	1425	2948	2948					-0.01768314695743811
ALQEHWALME	10	Oxidation (M)	_ALQEHWALM(Oxidation (M))E_		ALQEHWALM(1)E		ALQEHWALM(60)E	0	0	1		ENSG00000112130|ENST00000373479|RNF8;ENST00000229866.10_1_6:37328318-37358531:+|nuORF;nc|ENSG00000112130|O76064-3|RNF8	ENSG00000112130|ENST00000373479|RNF8	ENSG00000112130|ENST00000373479|RNF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.19879150390625	3	415.197379	1242.57031	-0.041735	-1.7328E-05	2.6821	0.0011136	2.6403	0.0010963	415.19870332764424	20.544	1.025	20.376	20.098	21.123	-0.16774					60	20	5	0	0	0	0.811	1	562	562		59.931	10.395	1	1480300			2306	3173	1424	1426	2949	2949		120			-0.04127437096667563
ALQEKEALL	9	Unmodified	_ALQEKEALL_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7970275878906	2	507.795132	1013.57571	-0.25552	-0.00012975	0.40274	0.00020451	0.14721	7.4755E-05	507.7950528523689	57.902	0.25389	57.727	57.534	57.788	-0.1749					10	6	2	0	0	0	0.19099	1	6502	6502		90.37	2.6734	1	2811200			2307	6441	1425	1427	2950	2950					0.06946609757483202
ALQEKEALL	9	Unmodified	_ALQEKEALL_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.806640625	2	507.795132	1013.57571	0.12198	6.194E-05	-0.35166	-0.00017857	-0.22968	-0.00011663	507.7944582140832	21.294	0.88113	21.103	20.538	21.42	-0.19072					27	17	2	0	0	0	0.024261	1	576	576		64.207	13.015	1	159010			2308	6441	1425	1427	2951	2951					0.06946609757483202
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.8079223632812	2	550.808574	1099.60259	-1.0914	-0.00060113	-0.080425	-4.4299E-05	-1.1718	-0.00064543	550.8085726368191	60.629	0.5569	60.629	60.401	60.958	0					58	14	6	0	0	0	0.35556	1	7001	7001		68.846	13.342	1	3102500			2309	6076	1426	1428	2952	2952					0.05677718368656315
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8095092773438	2	550.808574	1099.60259	-0.98609	-0.00054314	0.62906	0.00034649	-0.35703	-0.00019665	550.8088542366107	60.715	0.55527	60.539	60.198	60.753	-0.1761					35	13	3	0	0	0	0.33603	1	6776	6776		70.816	15.312	1	1763400			2310	6076	1426	1428	2953	2953					0.05677718368656315
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8102416992188	2	550.808574	1099.60259	-0.8896	-0.00049	0.4608	0.00025381	-0.42879	-0.00023618	550.8087449516909	60.938	0.59471	60.684	60.336	60.931	-0.25374					39	14	4	0	0	0	0.20652	1	6789	6789		88.177	30.366	1	1376300			2311	6076	1426	1428	2954	2954					0.05677718368656315
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.808574	1099.60259	-1.0479	-0.00057721	-0.013967	-7.6932E-06	-1.0619	-0.0005849	550.8086798808854	60.875	0.677	60.662	60.31	60.987	-0.21339	0.025476	-0.00034483	NaN	88.177	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3337100			2312	6076	1426	1428							0.05677718368656315
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.808574	1099.60259	-1.9476	-0.0010728	0.72451	0.00039907	-1.2231	-0.0006737	550.809081395431	60.521	0.83001	60.599	60.088	60.918	0.078884	-0.036995	0.00046869	NaN	88.177	65	21	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3023000			2313	6076	1426	1428							0.05677718368656315
ALQEKLWNV	9	Unmodified	_ALQEKLWNV_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.808574	1099.60259	-0.35285	-0.00019435	0.13864	7.6366E-05	-0.21421	-0.00011799	550.8085152511153	60.911	0.55283	60.705	60.336	60.889	-0.20599	0.068332	-0.00017671	NaN	88.177	46	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1323900			2314	6076	1426	1428							0.05677718368656315
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(150)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7686157226562	2	535.768591	1069.52263	0.57356	0.0003073	-0.95112	-0.00050958	-0.37755	-0.00020228	535.7680359436768	36.986	0.89664	36.986	36.298	37.195	0					54	23	3	0	0	0	0.020687	3	2982	2971;2982;2996		148.99	55.844	1	4593200			2315	3151	1427	1429	2955;2956;2957	2956		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(140)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7674560546875	2	535.768591	1069.52263	-0.043982	-2.3564E-05	-0.21619	-0.00011583	-0.26017	-0.00013939	535.7683968789208	37.393	0.87947	37.393	37.158	38.037	0					53	24	3	0	0	0	0.030064	2	3039	3039;3050		141.52	48.377	1	4636300			2316	3151	1427	1429	2958;2959	2958		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(140)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.768310546875	2	535.768591	1069.52263	-0.46702	-0.00025021	0.088846	4.7601E-05	-0.37817	-0.00020261	535.7686018080751	36.835	0.89791	36.771	36.08	36.978	-0.063385					45	23	3	0	0	0	0.03666	3	2942	2933;2942;2956		136.27	53.518	1	4429400			2317	3151	1427	1429	2960;2961;2962	2961		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(140)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.767822265625	2	535.768591	1069.52263	-0.40353	-0.0002162	0.31057	0.00016639	-0.092968	-4.9809E-05	535.7685869698525	37.259	0.81808	37.195	36.978	37.796	-0.063385					59	22	4	0	0	0	0.03666	3	3017	3004;3017;3029		136.27	63.389	1	4307200			2318	3151	1427	1429	2963;2964;2965	2964		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(44)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.80029296875	2	535.768591	1069.52263	-0.10295	-5.516E-05	-0.32604	-0.00017468	-0.42899	-0.00022984	535.7683887627987	40.66	3.2197	40.537	38.108	41.328	-0.12317					146	88	2	0	0	0	0.024367	1	3701	3701		44.377	13.874	1	1366900			2319	3151	1427	1429	2966	2966		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(140)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7684936523438	2	535.768591	1069.52263	-0.77664	-0.0004161	0.50409	0.00027007	-0.27256	-0.00014603	535.7688101398003	36.941	0.51063	36.979	36.684	37.194	0.038044					35	12	3	0	0	0	0.03666	3	2908	2908;2921;2942		136.27	43.125	1	4671000			2320	3151	1427	1429	2967;2968;2969	2967		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(150)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7677001953125	2	535.768591	1069.52263	-0.59317	-0.0003178	0.17432	9.3393E-05	-0.41886	-0.00022441	535.7685805035956	37.398	1.2785	37.431	37.189	38.467	0.032269					71	35	3	0	0	0	0.016542	3	2994	2982;2994;3006		154.12	79.075	1	4143600			2321	3151	1427	1429	2970;2971;2972	2971		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(93)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7672119140625	2	535.768591	1069.52263	0.014728	7.8909E-06	-3.1009	-0.0016614	-3.0862	-0.0016535	535.7669246439028	37.14	1.35	36.947	36.375	37.725	-0.193					103	34	5	0	0	0	0.17822	1	3008	3008		93.195	28.988	1	9955100			2322	3151	1427	1429	2973	2973		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_		ALQEM(1)VHQV		ALQEM(120)VHQV	0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7667846679688	2	535.768591	1069.52263	-0.24732	-0.00013251	-2.958	-0.0015848	-3.2053	-0.0017173	535.766993825871	37.111	1.4415	36.902	36.525	37.967	-0.2092					115	37	5	0	0	0	0.067814	1	2995	2995		122.18	34.48	1	8674400			2323	3151	1427	1429	2974	2974		118			-0.009350912968329794
ALQEMVHQV	9	Oxidation (M)	_ALQEM(Oxidation (M))VHQV_					0	0	1		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.768591	1069.52263	-1.3062	-0.00069982	-7.4351	-0.0039835	-8.7413	-0.0046833	535.7653659786744	37.837	0.43859	37.616	37.428	37.867	-0.22059	0.20743	-0.007958	NaN	154.12	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152450			2324	3151	1427	1429				118			-0.009350912968329794
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7708740234375	2	527.771134	1053.52771	-1.1335	-0.00059825	1.6658	0.00087916	0.53226	0.00028091	527.7718753806917	47.987	0.65792	47.987	47.653	48.311	0					51	19	3	0	0	0	0.01388	4	4868	4845;4856;4868;4881		180.87	90.5	1	12815000			2325	3151	1427	1430	2975;2976;2977;2978	2977					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.770263671875	2	527.771134	1053.52771	-0.91577	-0.00048331	1.3964	0.00073699	0.48065	0.00025367	527.7717373708812	48.156	0.65978	48.003	47.669	48.329	-0.153					51	19	3	0	0	0	0.020687	4	4881	4857;4869;4881;4894		148.99	66.746	1	12031000			2326	3151	1427	1430	2979;2980;2981;2982	2981					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7700805664062	2	527.771134	1053.52771	-0.56501	-0.0002982	1.1869	0.00062642	0.62191	0.00032823	527.771596097736	47.84	0.8297	47.899	47.615	48.445	0.059097					52	23	3	0	0	0	0.048057	3	4802	4776;4788;4802		129.42	56.839	1	12209000			2327	3151	1427	1430	2983;2984;2985	2985					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.7705688476562	2	527.771134	1053.52771	-0.57137	-0.00030155	-0.73202	-0.00038634	-1.3034	-0.00068789	527.771656796692	47.9	0.90692	47.803	47.384	48.291	-0.097553					94	24	6	0	0	0	0.016542	3	4716	4716;4726;4739		154.12	61.29	1	3616000			2328	3151	1427	1430	2986;2987;2988	2986					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	OPSCC_40_ClassI_Rep-2	5	527.7703857421875	2	527.771134	1053.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.197	1	47.921	47.421	48.421	-0.27598								0	0	0	0.014459	1	4750	4750		141.52	69.643	1				2329	3151	1427	1430	2989	2989					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	OPSCC_40_ClassI_Rep-2	5	527.7700805664062	2	527.771134	1053.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.273	1	47.997	47.497	48.497	-0.27598								0	0	0	0.0099265	1	4762	4762		167.23	73.222	1				2330	3151	1427	1430	2990	2990					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	OPSCC_40_ClassI_Rep-2	5	527.7689819335938	2	527.771134	1053.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.354	1	48.078	47.578	48.578	-0.27598								0	0	0	0.10825	1	4775	4775		90.601	29.629	1				2331	3151	1427	1430	2991	2991					0.003092125657985889
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.7700805664062	2	527.771134	1053.52771	0.26348	0.00013906	-1.7013	-0.00089787	-1.4378	-0.00075882	527.7711428411625	48.024	0.91039	47.838	47.423	48.334	-0.18684					79	24	5	0	0	0	0.016542	3	4731	4723;4731;4743		154.12	59.421	1	3619400			2332	3151	1427	1430	2992;2993;2994	2993					0.003092125657985889
ALQERLDGL	9	Unmodified	_ALQERLDGL_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;NAP1L1|p.A93Vfs*45|1|0.16|ENSG00000187109|chr12:76060181-76060208|AGATCGTGAACTTCCTCATAGAATTTGG/-|frameshift_variant	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7814025878906	2	507.782556	1013.55056	0.15451	7.8458E-05	0.52986	0.00026905	0.68437	0.00034751	507.7828059828723	52.684	1.07	52.537	51.915	52.985	-0.14724					33	25	2	0	0	0	0.26413	1	5638	5638		80.455	7.5754	1	1189500			2333	9608	1428	1431	2995	2995					0.04432554954905754
ALQESLVQI	9	Unmodified	_ALQESLVQI_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.78765869140625	2	500.787307	999.560061	0.49884	0.00024981	-0.4134	-0.00020703	0.085443	4.2789E-05	500.786854620409	72.146	0.842	72.146	71.94	72.782	0					32	20	2	0	0	0	0.20652	1	8788	8788		88.177	10.859	1	4616200			2334	18574	1429	1432	2996	2996					0.060263232404167866
ALQESLVQI	9	Unmodified	_ALQESLVQI_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.78741455078125	2	500.787307	999.560061	0.012364	6.1917E-06	0.27212	0.00013627	0.28448	0.00014247	500.7872568786272	72.51	0.59746	72.233	72.028	72.626	-0.2769					22	13	2	0	0	0	0.34489	1	8508	8508		69.628	7.5202	1	852040			2335	18574	1429	1432	2997	2997					0.060263232404167866
ALQESLVQI	9	Unmodified	_ALQESLVQI_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7873840332031	2	500.787307	999.560061	-0.7892	-0.00039522	0.89849	0.00044995	0.10928	5.4727E-05	500.7875275158058	72.37	0.67551	72.171	71.949	72.625	-0.19811					27	15	2	0	0	0	0.071379	1	8484	8484		120.87	16.812	1	908850			2336	18574	1429	1432	2998	2998					0.060263232404167866
ALQETLIRA	9	Unmodified	_ALQETLIRA_					0	0	0		ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7407531738281	2	507.800749	1013.58694	0.95429	0.00048459	-1.554	-0.00078911	-0.59968	-0.00030452	507.79977134071686	51.362	0.5074	51.181	50.908	51.415	-0.18071					21	12	2	0	0	0	0.024367	1	5267	5267		44.377	12.847	1	667040			2337	15483	1430	1433	2999	2999					0.0806943185162936
ALQETLIRA	9	Unmodified	_ALQETLIRA_					0	0	0		ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.800749	1013.58694	0.90496	0.00045954	-1.7009	-0.0008637	-0.79591	-0.00040416	507.7998151719005	51.212	0.65159	51.1	50.823	51.475	-0.11163	-0.053984	-0.00046302	NaN	36.447	48	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	773060			2338	15483	1430	1433							0.0806943185162936
ALQGKTRYV	9	Unmodified	_ALQGKTRYV_					0	0	0			REV__nc|ENSG00000116337|Q01433-4|AMPD2	REV__nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.26416015625	2	518.300916	1034.58728	-1.5798	-0.00081881	0.71663	0.00037143	-0.86316	-0.00044738	518.3011125749734	30.153	0.69744	30.153	29.895	30.592	0					38	16	3	0	0	0	0.024367	1	1946	1946		52.937	3.4952	1	678330	+		2339	36590	1431	1434	3000	3000					0.07136851571453917
ALQIDRFL	8	Unmodified	_ALQIDRFL_					0	0	0			REV__ENST00000497230.2_1_1:170695565-170695829:+|nuORF	REV__ENST00000497230.2_1_1:170695565-170695829:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2836608886719	2	488.284734	974.554916	-1.0073	-0.00049186	0.09609	4.6919E-05	-0.91124	-0.00044494	488.28483154213905	55	1.0817	55.098	54.626	55.707	0.098015					98	29	5	0	0	0	0.44658	1	6012	6012		90.777	11.326	1	53805000	+		2340	33847	1432	1435	3001	3001					0.06662064168483539
ALQIPAAKL	9	Unmodified	_ALQIPAAKL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7975769042969	2	462.797478	923.580402	1.0133	0.00046895	-0.88308	-0.00040869	0.13022	6.0264E-05	462.7970051402702	58.898	1.0561	58.711	58.275	59.331	-0.18705					66	28	4	0	0	0	0.20967	1	6649	6649		87.754	0	1	6423900			2341	5429	1433	1436	3002	3002					0.11555538690890899
ALQKALLV	8	Unmodified	_ALQKALLV_					0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2868347167969	2	428.286746	854.558939	-0.15282	-6.5452E-05	0.29494	0.00012632	0.14212	6.0868E-05	428.28673327833013	63.282	1.0828	63.031	62.683	63.765	-0.25141					68	28	4	0	0	0	0.88442	2	7344	7344;7357		52.299	5.5327	1	6288900	+		2342	26927	1434	1437	3003;3004	3003					0.12584153662191966
ALQKELGAV	9	Unmodified	_ALQKELGAV_					0	0	0			REV__nc|ENSG00000123143|Q16512-3|PKN1	REV__nc|ENSG00000123143|Q16512-3|PKN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.76416015625	2	464.776742	927.538931	-0.64921	-0.00030174	3.2219	0.0014975	2.5727	0.0011957	464.780041170207	33.52	0.54411	33.52	33.388	33.932	0					20	14	3	0	0	0	0.023596	1	2429	2429		44.117	4.864	1	93498	+		2343	22680	1435	1438	3005	3005					0.07226357931574512
ALQKVLEF	8	Unmodified	_ALQKVLEF_					0	0	0		nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7786865234375	2	474.28166	946.548768	0.1566	7.4271E-05	-3.1857	-0.0015109	-3.0291	-0.0014366	474.28002015476153	23.761	0.56712	23.837	23.434	24.001	0.076239					20	12	2	0	0	0	0.027866	1	938	938		23.042	0	1	162130			2344	5650	1436	1439	3006	3006					0.07335545936962262
ALQLGCIALT	10	Unmodified	_ALQLGCIALT_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF;ENST00000534072.1_1_8:145139936-145140713:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8053283691406	2	501.786253	1001.55795	-0.38287	-0.00019212	-1.7861	-0.00089626	-2.169	-0.0010884	501.785043264905	60.158	0.5543	59.958	59.577	60.132	-0.20016					22	14	2	0	0	0	0.03519	1	6856	6856		32.812	7.3622	1	101440			2345	10056	1437	1440	3007	3007					0.057235712309420705
ALQLLLLPALL	11	Unmodified	_ALQLLLLPALL_					0	0	0			REV__nc|ENSG00000284491|A0A1W2PP97|THSD8	REV__nc|ENSG00000284491|A0A1W2PP97|THSD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.3432006835938	2	589.399567	1176.78458	0.67423	0.00039739	2.8165	0.00166	3.4907	0.0020574	589.4010774872639	92.757	0.21504	92.765	92.629	92.844	0.0077286					6	4	2	0	0	0	0.024821	1	11698	11698		5.5578	0.33768	1	19057	+		2346	37208	1438	1441	3008	3008					0.20326058061550611
ALQLVASGTV	10	Unmodified	_ALQLVASGTV_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.259521484375	2	479.782025	957.549496	-0.18924	-9.0792E-05	0.96189	0.0004615	0.77265	0.0003707	479.7820164318418	25.058	1.2782	25.058	24.166	25.445	0					67	29	4	0	0	0	0.03519	1	1149	1149		67.494	3.2864	1	359040			2347	6720	1439	1442	3009	3009					0.0690234058599799
ALQMEAEAL	9	Unmodified	_ALQMEAEAL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;nc|ENSG00000011405|O00443-2|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2848205566406	2	488.244418	974.474282	-0.18809	-9.1835E-05	4.3547	0.0021262	4.1666	0.0020343	488.24692294089317	55.291	0.29938	55.141	55	55.299	-0.15036					10	8	2	0	0	0	0.020546	1	6067	6067		96.19	41.414	1	163030			2348	895	1440	1443	3010	3010					-0.013975849367511728
ALQPHSPII	9	Unmodified	_ALQPHSPII_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2843322753906	2	488.284734	974.554916	0.41362	0.00020196	-1.4227	-0.00069469	-1.0091	-0.00049273	488.28412755468884	55.179	1.2032	55.179	54.689	55.892	0					103	33	5	0	0	0	0.13494	2	6091	6091;6116		102.77	5.4172	1	52978000	+		2349	23218	1441	1444	3011;3012	3011					0.06662064168483539
ALQPHSPII	9	Unmodified	_ALQPHSPII_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2848205566406	2	488.284734	974.554916	-0.19056	-9.3045E-05	-0.85386	-0.00041693	-1.0444	-0.00050997	488.2844135114245	55.255	1.1397	55.105	54.608	55.747	-0.15036					109	31	6	0	0	0	0.18915	2	6067	6067;6117		90.777	5.4172	1	54329000	+		2350	23218	1441	1444	3013;3014	3013					0.06662064168483539
ALQPLLHTV	9	Unmodified	_ALQPLLHTV_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.3009948730469	2	496.300384	990.586216	0.18239	9.0518E-05	-0.27989	-0.00013891	-0.097506	-4.8392E-05	496.30004176192205	57.359	0.52891	57.359	57.038	57.567	0					39	13	4	0	0	0	0.014013	1	6443	6443		166.78	69.31	1	2428200			2351	5762	1442	1445	3015	3015					0.09054637202564209
ALQPLLHTV	9	Unmodified	_ALQPLLHTV_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.300384	990.586216	0.42883	0.00021283	-0.57798	-0.00028685	-0.14915	-7.4023E-05	496.2999176721033	57.578	0.53634	57.403	57.072	57.608	-0.1749	0.052234	-0.00041352	NaN	166.78	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2088000			2352	5762	1442	1445							0.09054637202564209
ALQPLLHTV	9	Unmodified	_ALQPLLHTV_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.300384	990.586216	-0.26872	-0.00013337	0.19894	9.8733E-05	-0.069783	-3.4634E-05	496.3002822330441	57.245	0.52771	57.34	57.014	57.541	0.09531	-0.010345	0.00035764	NaN	166.78	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2118900			2353	5762	1442	1445							0.09054637202564209
ALQPLLHTV	9	Unmodified	_ALQPLLHTV_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.300384	990.586216	-0.88822	-0.00044082	1.7121	0.00084971	0.82387	0.00040889	496.3010740802318	57.477	0.37318	57.299	57.06	57.434	-0.17775	-0.050906	0.0018596	NaN	166.78	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160880			2354	5762	1442	1445							0.09054637202564209
ALQPSIFSV	9	Unmodified	_ALQPSIFSV_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2610168457031	2	481.271293	960.528032	-0.59025	-0.00028407	1.8958	0.00091241	1.3056	0.00062834	481.27221500600734	79.972	0.5448	79.994	79.729	80.274	0.021439					20	12	2	0	0	0	0.024397	1	9842	9842		39.253	11.371	1	195570			2355	7181	1443	1446	3016	3016					0.046189555572937024
ALQPSIFSV	9	Unmodified	_ALQPSIFSV_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.271293	960.528032	-0.93547	-0.00045022	2.0998	0.0010106	1.1643	0.00056036	481.2722107680085	80.191	0.84099	80.039	79.673	80.514	-0.15169	0.035574	0.00035734	NaN	39.253	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149170			2356	7181	1443	1446							0.046189555572937024
ALQQEAQAL	9	Unmodified	_ALQQEAQAL_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2615966796875	2	486.261456	970.50836	-2.0971	-0.0010198	1.8798	0.00091407	-0.21733	-0.00010568	486.2622740613007	38.373	1.083	38.401	38.162	39.245	0.027275					74	29	5	0	0	0	0.42604	1	3162	3162		64.207	3.2353	1	5615200	+		2357	28872	1444	1447	3017	3017					0.021925795465108422
ALQRAAQCF	9	Unmodified	_ALQRAAQCF_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.25946044921875	2	504.258194	1006.50183	0.35337	0.00017819	1.5752	0.00079431	1.9286	0.0009725	504.2593070384721	22.676	1.0174	22.487	22.191	23.208	-0.18894					59	21	5	0	0	0	0.59099	2	827	827;838		53.351	5.1738	1	3235100	+		2358	36945	1445	1448	3018;3019	3018					-0.001156368858460155
ALQRAAQCF	9	Unmodified	_ALQRAAQCF_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.259521484375	2	504.258194	1006.50183	-0.61728	-0.00031127	2.9248	0.0014748	2.3075	0.0011636	504.2597814903842	22.762	0.87179	22.577	22.189	23.061	-0.18539					54	18	5	0	0	0	0.43973	1	831	831		63.306	9.9548	1	3460500	+		2359	36945	1445	1448	3020	3020					-0.001156368858460155
ALQREQHQ	8	Unmodified	_ALQREQHQ_					0	0	0			REV__ENSG00000130300|ENST00000252590|PLVAP	REV__ENSG00000130300|ENST00000252590|PLVAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.23846435546875	2	505.262322	1008.51009	1.389	0.00070179	0.97825	0.00049427	2.3672	0.0011961	505.26278569597025	63.337	0.39345	63.391	63.198	63.592	0.054104					16	10	2	0	0	0	0.027866	1	7346	7346		60.972	11.761	1	167780	+		2360	23101	1446	1449	3021	3021					0.006176333551479729
ALQSELDSL	9	Unmodified	_ALQSELDSL_					0	0	0		ENST00000487284.2_1_7:101917466-101926379:+|nuORF;nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	ENST00000487284.2_1_7:101917466-101926379:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2848205566406	2	488.253297	974.492041	-0.20164	-9.8449E-05	-1.8918	-0.00092369	-2.0935	-0.0010221	488.25278118753	55.203	0.23666	55.053	54.929	55.166	-0.15036					9	6	2	0	0	0	0.016258	1	6067	6067		93.195	28.988	1	133090			2361	15362	1447	1450	3022	3022					0.0037745358977190335
ALQSPIMSL	9	Oxidation (M)	_ALQSPIM(Oxidation (M))SL_		ALQSPIM(1)SL		ALQSPIM(93)SL	0	0	1		ENST00000342992.10_3_2:179460380-179460452:-|nuORF	ENST00000342992.10_3_2:179460380-179460452:-|nuORF	ENST00000342992.10_3_2:179460380-179460452:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2848205566406	2	488.26261	974.510668	-0.17539	-8.5638E-05	2.4703	0.0012062	2.2949	0.0011205	488.2639249510317	55.337	0.85316	55.186	54.894	55.747	-0.15036					62	23	5	0	0	0	0.016258	1	6067	6067		93.195	16.421	1	6453800			2362	12519	1448	1451	3023	3023		475			0.022392919599838024
ALQSPIMSL	9	Oxidation (M)	_ALQSPIM(Oxidation (M))SL_		ALQSPIM(1)SL		ALQSPIM(93)SL	0	0	1		ENST00000342992.10_3_2:179460380-179460452:-|nuORF	ENST00000342992.10_3_2:179460380-179460452:-|nuORF	ENST00000342992.10_3_2:179460380-179460452:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2836608886719	2	488.26261	974.510668	-1.1394	-0.00055634	3.7167	0.0018147	2.5773	0.0012584	488.26454717627905	55.061	0.82685	55.159	54.881	55.707	0.098015					65	22	5	0	0	0	0.018983	1	6012	6012		93.195	8.2799	1	6537600			2363	12519	1448	1451	3024	3024		475			0.022392919599838024
ALQTICADN	9	Unmodified	_ALQTICADN_					0	0	0		MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|60|2|anti-sense	MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|60|2|anti-sense	MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|60|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.2652893066406	2	474.726392	947.438231	-0.60152	-0.00028556	0.23784	0.00011291	-0.36368	-0.00017265	474.7266478205221	44.304	0.57553	44.159	43.883	44.459	-0.14471					26	16	3	0	0	0	0.024288	1	4228	4228		52.937	0	1	512460			2364	17964	1449	1452	3025	3025					-0.03759042113608757
ALQTRSLW	8	Unmodified	_ALQTRSLW_					0	0	0		ENST00000205386.8_1_7:107703372-107706232:-|nuORF	ENST00000205386.8_1_7:107703372-107706232:-|nuORF	ENST00000205386.8_1_7:107703372-107706232:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7778625488281	2	487.774534	973.534515	0.075239	3.67E-05	-0.039701	-1.9365E-05	0.035538	1.7335E-05	487.77435528546226	52.397	0.71012	52.213	51.927	52.637	-0.18404					27	17	2	0	0	0	0.99042	1	5437	5437		38.806	1.647	1	1682400			2365	11138	1450	1453	3026	3026					0.04668893508653582
ALQTVPPLC	9	Unmodified	_ALQTVPPLC_					0	0	0			REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.26171875	2	471.259871	940.505189	0.53665	0.0002529	3.3518	0.0015796	3.8884	0.0018325	471.26147683140755	26.107	1.2944	26.188	25.665	26.96	0.081291					90	30	4	0	0	0	0.6504	1	1258	1258		49.442	3.4896	1	4550900	+		2366	24147	1451	1454	3027	3027					0.032556131681417355
ALQWLTPEQTS	11	Unmodified	_ALQWLTPEQTS_					0	0	0		nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;ENST00000553041.5_1_12:96414526-96429297:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H	nc|ENSG00000111144|P09960-4|LTA4H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.7586975097656	3	425.218949	1272.63502	0.20973	8.9179E-05	-3.0668	-0.001304	-2.857	-0.0012149	425.2177382005167	31.746	0.48275	31.505	31.295	31.778	-0.24109					17	11	2	0	0	0	0.024759	1	2126	2126		23.378	6.2112	1	97396			2367	3089	1452	1455	3028	3028					0.00960460980991229
ALRAALGARG	10	Unmodified	_ALRAALGARG_					0	0	0		ENSG00000179058|ENST00000372478|C9orf50	ENSG00000179058|ENST00000372478|C9orf50	ENSG00000179058|ENST00000372478|C9orf50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7724914550781	2	478.293425	954.572297	-0.11426	-5.4649E-05	-0.84344	-0.00040341	-0.95769	-0.00045806	478.2928365124247	44.611	0.55061	44.611	44.348	44.898	0					32	15	3	0	0	0	0.03519	1	4316	4316		40.778	0.20554	1	279090			2368	8866	1453	1456	3029	3029					0.09319404494124228
ALRALLQT	8	Unmodified	_ALRALLQT_					0	0	0		nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;ENSG00000155393|ENST00000299192|HEATR3	nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.26336669921875	2	443.279452	884.544351	-0.70241	-0.00031136	0.93826	0.00041591	0.23585	0.00010455	443.2796179163733	29.54	0.41948	29.368	29.156	29.575	-0.17258					14	9	2	0	0	0	0.027866	1	1795	1795		20.482	0	1	81247			2369	6471	1454	1457	3030	3030					0.09746081514037996
ALRAQSALAL	10	Unmodified	_ALRAQSALAL_					0	0	0			REV__ENSG00000099957|ENST00000413302|P2RX6	REV__ENSG00000099957|ENST00000413302|P2RX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3065490722656	2	507.308741	1012.60293	-0.8274	-0.00041975	-0.78171	-0.00039657	-1.6091	-0.00081632	507.3084751133819	43.57	1.8058	43.333	42.879	44.685	-0.23736					159	48	6	0	0	0	0.62431	1	4075	4075		74.255	2.3776	1	107780000	+		2370	21025	1455	1458	3031	3031					0.09713138088500273
ALRCEPVKV	9	Unmodified	_ALRCEPVKV_					0	0	0			REV__ENSG00000121067|ENST00000504102|SPOP	REV__ENSG00000121067|ENST00000504102|SPOP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8181457519531	2	507.791869	1013.56919	-0.34984	-0.00017764	-2.7669	-0.001405	-3.1167	-0.0015826	507.790078565896	68.556	0.7271	68.295	67.939	68.666	-0.26165					34	17	3	0	0	0	0.024367	1	7937	7937		52.937	14.131	1	418800	+		2371	22578	1456	1459	3032	3032					0.06294393325106284
ALRDVSEEL	9	Unmodified	_ALRDVSEEL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.271728515625	2	516.272021	1030.52949	-0.29821	-0.00015396	-0.52097	-0.00026896	-0.81918	-0.00042292	516.2718386354584	48.919	0.74252	48.919	48.619	49.362	0					72	20	5	0	0	0	0.10174	4	5023	5002;5013;5023;5035		110.12	10.817	1	39736000			2372	1773	1457	1460	3033;3034;3035;3036	3035					0.01544544855391905
ALRDVSEEL	9	Unmodified	_ALRDVSEEL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2716064453125	2	516.272021	1030.52949	-0.38506	-0.0001988	-0.31079	-0.00016045	-0.69585	-0.00035925	516.2719731418506	49.141	0.64672	48.988	48.682	49.328	-0.15277					73	17	6	0	0	0	0.1158	4	5041	5008;5018;5029;5041		107.01	27.556	1	36581000			2373	1773	1457	1460	3037;3038;3039;3040	3040					0.01544544855391905
ALRDVSEEL	9	Unmodified	_ALRDVSEEL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2720336914062	2	516.272021	1030.52949	-1.3638	-0.0007041	0.68159	0.00035188	-0.68223	-0.00035221	516.2724803905842	48.823	0.75482	48.889	48.553	49.308	0.066795					58	20	4	0	0	0	0.1158	4	4932	4922;4932;4942;4954		107.01	24.39	1	34829000			2374	1773	1457	1460	3041;3042;3043;3044	3042					0.01544544855391905
ALRDVSEEL	9	Unmodified	_ALRDVSEEL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2716064453125	2	516.272021	1030.52949	-0.109	-5.6275E-05	-0.5098	-0.0002632	-0.61881	-0.00031947	516.2716804800933	49.272	0.82863	48.993	48.718	49.547	-0.27977					48	21	3	0	0	0	0.19099	1	4927	4927		90.37	8.0648	1	3593100			2375	1773	1457	1460	3045	3045					0.01544544855391905
ALRDVSEEL	9	Unmodified	_ALRDVSEEL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	516.272021	1030.52949	-0.84464	-0.00043606	0.31475	0.0001625	-0.52989	-0.00027357	516.2721239262532	48.989	1.058	48.888	48.618	49.676	-0.1008	-0.052774	0.00036197	NaN	110.12	60	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3458600			2376	1773	1457	1460							0.01544544855391905
ALRESSLVFE	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ALRESSLVFE_					1	0	0		ENST00000417960.5_1_3:172468522-172468597:+|nuORF	ENST00000417960.5_1_3:172468522-172468597:+|nuORF	ENST00000417960.5_1_3:172468522-172468597:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.8140258789062	2	596.814053	1191.61355	-1.1113	-0.00066325	1.1159	0.00066596	0.0045342	2.7061E-06	596.8145957654401	54.969	0.86486	55.067	54.733	55.598	0.098015					70	23	4	0	0	0	0.59716	1	5971	5971		77.318	8.5308	1	4429200			2377	13925	1458	1461	3046	3046					0.025410759523310844
ALRETSKH	8	Unmodified	_ALRETSKH_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2620544433594	2	471.261791	940.509028	0.53665	0.0002529	-0.72221	-0.00034035	-0.18557	-8.7451E-05	471.26147683140755	26.107	1.2944	26.188	25.665	26.96	0.081291					90	30	4	0	0	0	0.85395	1	1272	1272		54.776	8.8244	1	4550900			2378	10237	1459	1462	3047	3047					0.036394189862335224
ALRGICVIN	9	Unmodified	_ALRGICVIN_					0	0	0		ENST00000262510.10_2_16:57116485-57116767:+|nuORF	ENST00000262510.10_2_16:57116485-57116767:+|nuORF	ENST00000262510.10_2_16:57116485-57116767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2776794433594	2	479.778762	957.542971	-0.7631	-0.00036612	1.2218	0.00058618	0.45866	0.00022006	479.7793368239296	35.124	0.68428	35.102	34.905	35.589	-0.021763					32	17	3	0	0	0	0.024457	1	2657	2657		21.96	0	1	1509500			2379	11503	1460	1463	3048	3048					0.06250124153621073
ALRGVAQLL	9	Unmodified	_ALRGVAQLL_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7821044921875	2	470.800552	939.58655	-0.885	-0.00041666	0.11525	5.426E-05	-0.76975	-0.0003624	470.8004652277397	29.428	0.38827	29.428	29.223	29.611	0					14	9	2	0	0	0	0.024506	1	1807	1807		16.473	0.83693	1	124230	+		2380	26328	1461	1464	3049	3049					0.11434056922405489
ALRGYETF	8	Unmodified	_ALRGYETF_					0	0	0			REV__nc|ENSG00000119787|Q8NHH9-3|ATL2	REV__nc|ENSG00000119787|Q8NHH9-3|ATL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7718811035156	2	478.745442	955.476331	-0.66109	-0.00031649	3.6932	0.0017681	3.0321	0.0014516	478.7471279267165	44.896	0.62531	44.747	44.523	45.148	-0.1488					31	17	2	0	0	0	0.027866	1	4322	4322		25.45	0	1	637940	+		2381	22490	1462	1465	3050	3050					-0.003187881366216061
ALRITATDG	9	Unmodified	_ALRITATDG_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.25665283203125	2	459.256174	916.497795	-1.0065	-0.00046223	1.7699	0.00081285	0.76346	0.00035062	459.2569023291572	29.327	0.53796	29.327	29.032	29.57	0					40	13	4	0	0	0	0.13494	1	1794	1794		102.77	1.1726	1	5301600			2382	7399	1463	1466	3051	3051					0.03620596892085359
ALRLHDWSVE	10	Unmodified	_ALRLHDWSVE_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.88037109375	3	409.21565	1224.62512	0.96364	0.00039434	1.8768	0.00076801	2.8404	0.0011623	409.2163127613338	33.791	0.87483	33.848	33.423	34.298	0.056568					32	21	2	0	0	0	0.03519	1	2354	2354		15.333	0	1	127640			2383	4629	1464	1467	3052	3052					0.02179317766240274
ALRLKKKAD	9	Unmodified	_ALRLKKKAD_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3240356445312	2	521.840208	1041.66586	-0.58834	-0.00030702	4.4049	0.0022986	3.8166	0.0019916	521.8424313437606	57.846	1.2031	57.937	57.759	58.962	0.091221					55	32	2	0	0	0	0.024523	1	6545	6545		15.642	0	1	2294300	+		2384	25860	1465	1468	3053	3053					0.14669703876552376
ALRLLALDAGL	11	Unmodified	_ALRLLALDAGL_					0	0	0			REV__nc|ENSG00000178226|Q5K4E3-2|PRSS36	REV__nc|ENSG00000178226|Q5K4E3-2|PRSS36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3534545898438	2	563.353148	1124.69174	1.246	0.00070197	-0.74497	-0.00041968	0.50108	0.00028228	563.3523933939094	74.151	2.52	74.151	73.871	76.391	0					120	63	3	0	0	0	0.75995	1	9096	9096		60.118	0.18749	1	5884400	+		2385	27176	1466	1469	3054	3054					0.13438553328182934
ALRLLGKKK	9	Unmodified	_ALRLLGKKK_					0	0	0			REV__NIPA2|p.V193Sfs*42|1|0.33|ENSG00000140157|chr15:22866338-22866339|-/C|frameshift_variant	REV__NIPA2|p.V193Sfs*42|1|0.33|ENSG00000140157|chr15:22866338-22866339|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8152465820312	2	513.860944	1025.70733	-0.60441	-0.00031058	0.21724	0.00011163	-0.38718	-0.00019895	513.8610696694388	44.809	0.13942	44.845	44.783	44.923	0.0369					5	3	2	0	0	0	0.024541	1	4252	4252		12.959	0	1	50141	+		2386	23991	1467	1470	3055	3055					0.19550884635896182
ALRLQQAGG	9	Unmodified	_ALRLQQAGG_					0	0	0			REV__ENST00000354960.7_1_4:120550015-120550123:-|nuORF	REV__ENST00000354960.7_1_4:120550015-120550123:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.26416015625	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.80658	1	10203	10203		38.806	2.3594	1	3048400	+		2387	30768	1468	1471	3056	3056					0.05435722848858404
ALRLRKKS	8	Unmodified	_ALRLRKKS_					0	0	0		nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2816162109375	2	486.327268	970.639983	0.32698	0.00015902	0.54666	0.00026585	0.87363	0.00042487	486.3279467766187	89.493	0.20963	89.472	89.283	89.493	-0.021645					7	4	2	0	0	0	0.027866	1	11259	11259		7.6903	0	1	118770			2388	1053	1469	1472	3057	3057					0.15348854424939873
ALRLRSLVK	9	Unmodified	_ALRLRSLVK_					0	0	0		ENST00000519798.1_1_8:75897034-75924708:+|nuORF	ENST00000519798.1_1_8:75897034-75924708:+|nuORF	ENST00000519798.1_1_8:75897034-75924708:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3262939453125	2	528.356025	1054.6975	-0.1014	-5.3575E-05	3.0939	0.0016347	2.9925	0.0015811	528.3577023778954	66.032	0.11536	66.062	66.006	66.121	0.030106					4	2	2	0	0	0	0.024457	1	7776	7776		29.15	4.9468	1	82748			2389	15962	1470	1473	3058	3058					0.17233696630501072
ALRLVLGIVL	10	Unmodified	_ALRLVLGIVL_					0	0	0		ENSG00000181408|ENST00000313135|UTS2R	ENSG00000181408|ENST00000313135|UTS2R	ENSG00000181408|ENST00000313135|UTS2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8056640625	2	533.870977	1065.7274	-1.0817	-0.0005775	-1.2856	-0.00068634	-2.3673	-0.0012638	533.8713144305784	44.91	0.25148	44.91	44.827	45.079	0					10	6	2	0	0	0	0.03519	1	4345	4345		44.117	8.4985	1	50055			2390	9041	1471	1474	3059	3059					0.19716635575832697
ALRPGDAL	8	Unmodified	_ALRPGDAL_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.7349853515625	2	406.734877	811.455202	0.74106	0.00030141	-0.30332	-0.00012337	0.43774	0.00017804	406.7346304238571	22.312	0.78953	22.123	21.863	22.653	-0.18894					36	16	3	0	0	0	0.6248	1	780	780		73.975	8.1716	1	1003900			2391	6870	1472	1475	3060	3060					0.04193246554507368
ALRPGDAL	8	Unmodified	_ALRPGDAL_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.73480224609375	2	406.734877	811.455202	-0.0078127	-3.1777E-06	0.4419	0.00017973	0.43408	0.00017656	406.7349106186708	22.398	0.87883	22.213	21.906	22.784	-0.18539					48	18	4	0	0	0	0.56067	1	778	778		79.939	11.152	1	985480			2392	6870	1472	1475	3061	3061					0.04193246554507368
ALRPGTAYVL	10	Unmodified	_ALRPGTAYVL_					0	0	0		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MSMS	OPSCC_40_ClassI_Rep-2	5	530.80908203125	2	530.811116	1059.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.79	1	103.66	103.16	104.16	-0.12927								0	0	0	0.74882	1	12922	12922		30.318	3.5216	1				2393	8852	1473	1476	3062	3062					0.0802602223127451
ALRPLRRKR	9	Unmodified	_ALRPLRRKR_					0	0	0		ENST00000486439.1_1_6:43041562-43042407:+|nuORF	ENST00000486439.1_1_6:43041562-43042407:+|nuORF	ENST00000486439.1_1_6:43041562-43042407:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.3040771484375	2	583.391265	1164.76798	-1.0494	-0.00061223	-2.4083	-0.001405	-3.4577	-0.0020172	583.3899729257688	64.857	0.11747	64.601	64.504	64.621	-0.25563					4	2	2	0	0	0	0.024541	1	7371	7371		17.365	0	1	129760			2394	15348	1474	1477	3063	3063					0.19218414738838874
ALRPTSGLL	9	Unmodified	_ALRPTSGLL_					0	0	0		MRPL40|p.S154Vfs*7|1|0.02|ENSG00000185608|chr22:19435800-19435801|-/G|frameshift_variant;ENSG00000185608|ENST00000333130|MRPL40	MRPL40|p.S154Vfs*7|1|0.02|ENSG00000185608|chr22:19435800-19435801|-/G|frameshift_variant	MRPL40|p.S154Vfs*7|1|0.02|ENSG00000185608|chr22:19435800-19435801|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2506408691406	2	464.284734	926.554916	-0.61869	-0.00028725	-2.7505	-0.001277	-3.3692	-0.0015642	464.2828816048419	48.22	0.54185	48.22	47.906	48.448	0					25	15	2	0	0	0	0.021088	1	4931	4931		68.787	15.435	1	257570			2395	9455	1475	1478	3064	3064					0.0887006416847953
ALRPTSGLL	9	Unmodified	_ALRPTSGLL_					0	0	0		MRPL40|p.S154Vfs*7|1|0.02|ENSG00000185608|chr22:19435800-19435801|-/G|frameshift_variant;ENSG00000185608|ENST00000333130|MRPL40	MRPL40|p.S154Vfs*7|1|0.02|ENSG00000185608|chr22:19435800-19435801|-/G|frameshift_variant	MRPL40|p.S154Vfs*7|1|0.02|ENSG00000185608|chr22:19435800-19435801|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.284734	926.554916	-0.44505	-0.00020663	-1.776	-0.00082457	-2.2211	-0.0010312	464.28440074265325	49.069	0.47477	48.789	48.575	49.049	-0.27977	0.24721	0.0003239	NaN	68.787	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199980			2396	9455	1475	1478							0.0887006416847953
ALRQALLLL	9	Unmodified	_ALRQALLLL_					0	0	0		nc|ENSG00000123612|Q8NER5-3|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;nc|ENSG00000123612|Q8NER5-2|ACVR1C	nc|ENSG00000123612|Q8NER5-3|ACVR1C	nc|ENSG00000123612|Q8NER5-3|ACVR1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8244323730469	2	505.839677	1009.6648	-0.64789	-0.00032773	0.44477	0.00022498	-0.20312	-0.00010274	505.83973886071965	80.526	1.0524	80.526	80.247	81.299	0					45	25	3	0	0	0	0.024443	1	10122	10122		26.796	10.323	1	548740			2397	3992	1476	1479	3065	3065					0.16035489507669354
ALRQLVLAV	9	Unmodified	_ALRQLVLAV_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.23504638671875	2	491.824027	981.633501	-1.067	-0.00052476	-0.45735	-0.00022494	-1.5243	-0.0007497	491.82361163692826	40.476	0.36786	40.246	40.046	40.414	-0.23021					14	9	2	0	0	0	0.024541	1	3499	3499		8.2313	0	1	215850	+		2398	28458	1477	1480	3066	3066					0.14194916473547892
ALRRARAN	8	Unmodified	_ALRRARAN_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.250244140625	2	464.283392	926.552231	-0.39332	-0.00018261	-3.626	-0.0016835	-4.0193	-0.0018661	464.28193606266314	48.766	0.77565	48.613	48.159	48.935	-0.15276					34	21	2	0	0	0	0.027866	1	4930	4930		33.516	0	1	287220			2399	2184	1478	1481	3067	3067					0.08601653554171662
ALRRKKVL	8	Unmodified	_ALRRKKVL_					0	0	0		ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B	ENSG00000173272|ENST00000309451|MZT2A	ENSG00000173272|ENST00000309451|MZT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.34552001953125	2	492.345461	982.676368	-0.17976	-8.8504E-05	0.045661	2.2481E-05	-0.1341	-6.6023E-05	492.34532397393957	19.566	0.59096	19.405	19.183	19.774	-0.16079					27	11	4	0	0	0	0.85409	1	439	439		54.765	12.29	1	406170			2400	6247	1479	1482	3068	3068					0.18433731321647429
ALRRKKVL	8	Unmodified	_ALRRKKVL_					0	0	0		ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B	ENSG00000173272|ENST00000309451|MZT2A	ENSG00000173272|ENST00000309451|MZT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.3454284667969	2	492.345461	982.676368	1.3492	0.00066429	-1.4441	-0.000711	-0.094859	-4.6704E-05	492.34460863966274	19.632	0.54377	19.399	19.176	19.72	-0.23345					30	10	4	0	0	0	1.0574	1	424	424		21.702	3.3779	1	391470			2401	6247	1479	1482	3069	3069					0.18433731321647429
ALRRNYLPA	9	Unmodified	_ALRRNYLPA_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2735595703125	2	537.314358	1072.61416	0.35448	0.00019047	-1.6753	-0.00090018	-1.3208	-0.00070971	537.3132432261588	36.872	0.61482	36.872	36.543	37.158	0					32	15	3	0	0	0	0.024354	1	2964	2964		30.504	5.0535	1	383150			2402	10074	1480	1483	3070	3070					0.08075960182668496
ALRRNYLPA	9	Unmodified	_ALRRNYLPA_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.314358	1072.61416	0.46918	0.0002521	2.1511	0.0011558	2.6203	0.0014079	537.8176943529825	36.806	0.99354	36.596	36.005	36.999	-0.2092	-0.13541	0.0033863	NaN	23.042	72	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	703070			2403	10074	1480	1483							0.08075960182668496
ALRRRGHHEP	10	Unmodified	_ALRRRGHHEP_					0	0	0		ENST00000479209.1_1_3:150263965-150264043:-|nuORF	ENST00000479209.1_1_3:150263965-150264043:-|nuORF	ENST00000479209.1_1_3:150263965-150264043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.88037109375	3	410.230516	1227.66972	0.92672	0.00038017	4.2769	0.0017545	5.2037	0.0021347	410.2321967388195	33.685	0.62098	33.742	33.35	33.971	0.056568					24	15	2	0	0	0	0.03519	1	2354	2354		7.0187	0	1	107420			2404	15167	1481	1484	3071	3071					0.06499186422979619
ALRRSSLPL	9	Unmodified	_ALRRSSLPL_					0	0	0			REV__USP17L2|p.P75L|1|0.05|ENSG00000223443|chr8:12138537-12138537|G/A|missense_variant	REV__USP17L2|p.P75L|1|0.05|ENSG00000223443|chr8:12138537-12138537|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7680969238281	2	506.816733	1011.61891	0.28983	0.00014689	1.2794	0.00064843	1.5692	0.00079532	506.81570586044575	59.187	0.32702	59.273	59.099	59.426	0.085682					13	8	2	0	0	0	0.024381	1	6650	6650		29.15	7.1897	1	91319	+		2405	37765	1482	1485	3072	3072					0.11356844325428028
ALRSLELR	8	Unmodified	_ALRSLELR_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3;REV__nc|ENSG00000021645|Q9Y4C0|NRXN3;REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2434387207031	2	479.295633	956.576714	-0.31467	-0.00015082	4.0161	0.0019249	3.7014	0.0017741	479.29726818844125	40.062	0.70559	39.949	39.677	40.382	-0.11222					36	18	3	0	0	0	0.027866	1	3539	3539		53.351	7.3995	1	664490	+		2406	27301;19996;36441	1483	1486	3073	3073					0.0966886891702643
ALRSLIYK	8	Unmodified	_ALRSLIYK_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.732666015625	2	482.302927	962.591301	0.0065565	3.1622E-06	-0.3597	-0.00017348	-0.35314	-0.00017032	482.30260501493416	57.248	0.45642	57.248	57.003	57.459	0					19	11	2	0	0	0	0.027866	1	6445	6445		30.504	12.179	1	210560			2407	1870;18103	1484	1487	3074	3074					0.10850941065177722
ALRSRHPF	8	Unmodified	_ALRSRHPF_					0	0	0			REV__ENSG00000205903|ENST00000382252|ZNF316	REV__ENSG00000205903|ENST00000382252|ZNF316	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2794494628906	2	492.280318	982.546083	-0.19926	-9.8093E-05	-0.71298	-0.00035099	-0.91225	-0.00044908	492.27977400556153	41.142	0.70009	41.165	40.764	41.464	0.023006					41	19	3	0	0	0	0.97924	1	3620	3620		40.573	1.7665	1	2751600	+		2408	28696	1485	1488	3075	3075					0.054111353226630854
ALRTLITKG	9	Unmodified	_ALRTLITKG_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2864990234375	2	486.813659	971.612765	0.36761	0.00017896	3.2902	0.0016017	3.6579	0.0017807	486.8153129143868	49.328	0.29564	49.328	49.141	49.437	0					12	7	2	0	0	0	0.024539	1	5099	5099		14.865	0	1	49823			2409	1153	1486	1489	3076	3076					0.12582326093888696
ALRTWPRP	8	Unmodified	_ALRTWPRP_					0	0	0		ENST00000555759.1_1_14:95904955-95916441:-|nuORF	ENST00000555759.1_1_14:95904955-95916441:-|nuORF	ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.78839111328125	2	498.790518	995.566484	-0.28134	-0.00014033	-4.4499	-0.0022196	-4.7312	-0.0023599	498.7883463263969	21.483	1.0123	21.554	21.254	22.266	0.071489					58	20	4	0	0	0	0.845	1	622	622		55.504	4.3115	1	2483100			2410	16690	1487	1490	3077	3077					0.06852305982465623
ALRVFDLPL	9	Unmodified	_ALRVFDLPL_					0	0	0		nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.800537109375	2	522.316035	1042.61752	-0.46049	-0.00024052	-2.0436	-0.0010674	-2.5041	-0.0013079	522.3146976620194	48.209	0.57591	48.276	48.117	48.693	0.066795					26	15	2	0	0	0	0.024319	1	4896	4896		66.429	20.477	1	352070			2411	8982	1488	1491	3078	3078					0.09791210236653569
ALRVKTSL	8	Unmodified	_ALRVKTSL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.287353515625	2	444.287277	886.560001	-0.35017	-0.00015557	0.4248	0.00018873	0.074636	3.316E-05	444.2873883664341	35.371	0.69719	35.156	34.874	35.571	-0.21556					52	17	4	0	0	0	0.27973	1	2676	2676		120.62	5.162	1	4064900			2412	1476;13528	1489	1492	3079	3079					0.11218368031097725
ALRVKTSL	8	Unmodified	_ALRVKTSL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.287353515625	2	444.287277	886.560001	-0.51599	-0.00022925	0.53284	0.00023674	0.016854	7.4881E-06	444.28743090040354	35.411	0.66032	35.199	34.924	35.584	-0.21246					50	16	4	0	0	0	0.32162	1	2670	2670		108.09	5.3142	1	4290200			2413	1476;13528	1489	1492	3080	3080					0.11218368031097725
ALRVLNSYW	9	Unmodified	_ALRVLNSYW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.308349609375	2	561.308741	1120.60293	0.32618	0.00018309	-0.71176	-0.00039952	-0.38558	-0.00021643	561.308245794733	67.322	0.75236	67.071	66.79	67.542	-0.25081					51	17	4	0	0	0	0.17845	4	7755	7733;7743;7755;7767		93.143	41.808	1	4729400			2414	8493	1490	1493	3081;3082;3083;3084	3083					0.047451380885149774
ALRVLNSYW	9	Unmodified	_ALRVLNSYW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.30859375	2	561.308741	1120.60293	-0.29685	-0.00016663	-0.10099	-5.6686E-05	-0.39784	-0.00022331	561.3084881351951	67.347	0.9889	67.124	66.778	67.766	-0.22374					60	23	4	0	0	0	0.12914	5	7735	7735;7745;7757;7768;7782		104.06	51.12	1	4995000			2415	8493	1490	1493	3085;3086;3087;3088;3089	3085					0.047451380885149774
ALRVLNSYW	9	Unmodified	_ALRVLNSYW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.3084716796875	2	561.308741	1120.60293	-0.62779	-0.00035238	0.40262	0.00022599	-0.22517	-0.00012639	561.3088553840943	67.336	0.67075	67.098	66.838	67.508	-0.23814					52	15	4	0	0	0	0.12914	4	7727	7727;7739;7752;7765		104.06	48.973	1	4802200			2416	8493	1490	1493	3090;3091;3092;3093	3090					0.047451380885149774
ALRYPKSVD	9	Unmodified	_ALRYPKSVD_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.8167114257812	2	524.792924	1047.57129	0.4221	0.00022152	3.3397	0.0017526	3.7618	0.0019741	524.7945977161224	92.068	0.88688	92.077	91.701	92.588	0.009407					46	21	3	0	0	0	0.024427	1	11564	11564		34.173	2.6427	1	716340	+		2417	25031	1491	1494	3094	3094					0.049411453345555856
ALRYPKSVD	9	Unmodified	_ALRYPKSVD_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.792924	1047.57129	-1.4001	-0.00073475	5.2297	0.0027445	3.8296	0.0020097	524.7954748542279	92.013	0.98325	92.013	91.554	92.537	0	0.085526	0.00076731	NaN	34.173	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806390	+		2418	25031	1491	1494							0.049411453345555856
ALRYPKSVD	9	Unmodified	_ALRYPKSVD_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.792924	1047.57129	-1.7047	-0.00089459	5.9288	0.0031114	4.2241	0.0022168	524.7959345325112	91.89	0.72299	91.741	91.439	92.162	-0.1487	-0.18581	0.0015011	NaN	34.173	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214630	+		2419	25031	1491	1494							0.049411453345555856
ALRYPKSVD	9	Unmodified	_ALRYPKSVD_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.792924	1047.57129	-0.32967	-0.00017301	5.3496	0.0028074	5.0199	0.0026344	524.7951767656186	91.949	1.026	91.827	90.995	92.021	-0.12242	-0.10046	0.00089316	NaN	34.173	48	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184180	+		2420	25031	1491	1494							0.049411453345555856
ALRYPKSVD	9	Unmodified	_ALRYPKSVD_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.792924	1047.57129	0.2437	0.00012789	4.0316	0.0021157	4.2753	0.0022436	525.2965721258782	92.026	0.51805	91.884	91.573	92.091	-0.1413	-0.042629	-0.00049018	NaN	34.173	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191320	+		2421	25031	1491	1494							0.049411453345555856
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.28485107421875	2	458.284734	914.554916	-0.16228	-7.4369E-05	0.68377	0.00031336	0.52149	0.00023899	458.28487600249684	57.879	1.2022	57.704	57.421	58.623	-0.1749					48	32	2	0	0	0	0.016811	1	6522	6522		201.49	67.675	1	3866600			2422	3700	1492	1495	3095	3095					0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.28387451171875	2	458.284734	914.554916	-0.23205	-0.00010635	0.5432	0.00024894	0.31114	0.00014259	458.2848558244548	57.584	1.0175	57.679	57.32	58.337	0.09531					48	27	2	0	0	0	0.018505	1	6413	6413		211.39	82.528	1	3403100			2423	3700	1492	1495	3096	3096					0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.284734	914.554916	0.31931	0.00014634	-0.1108	-5.0779E-05	0.20851	9.5557E-05	458.2845541275318	57.75	1.0346	57.75	57.384	58.418	0	0.074093	-0.00034332	NaN	201.49	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4305000			2424	3700	1492	1495							0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.284734	914.554916	-0.38486	-0.00017637	0.60997	0.00027954	0.22511	0.00010316	458.2849078713364	57.815	0.35821	57.637	57.396	57.754	-0.17775	-0.039287	0.00031731	NaN	201.49	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	829600			2425	3700	1492	1495							0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	458.284734	914.554916	-0.01677	-7.6855E-06	0.066494	3.0473E-05	0.049724	2.2788E-05	458.2846897727048	57.811	0.41904	57.621	57.37	57.789	-0.19017	-0.054983	-0.00018082	NaN	201.49	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	870530			2426	3700	1492	1495							0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.284734	914.554916	-0.23539	-0.00010787	-0.088675	-4.0638E-05	-0.32406	-0.00014851	458.284700267191	57.899	0.43077	57.665	57.424	57.854	-0.23363	-0.010701	-0.00032304	NaN	201.49	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	788910			2427	3700	1492	1495							0.09422064168461475
ALSAVESDSH	10	Unmodified	_ALSAVESDSH_					0	0	0			REV__ENSG00000116205|ENST00000234827|TCEANC2	REV__ENSG00000116205|ENST00000234827|TCEANC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.78192138671875	2	508.238178	1014.4618	-0.076339	-3.8799E-05	3.7087	0.0018849	3.6324	0.0018461	508.23977275667806	42.241	0.66283	42.118	41.718	42.38	-0.12299					33	17	3	0	0	0	0.03519	1	3740	3740		23.042	1.3402	1	293000	+		2428	22269	1493	1496	3097	3097					-0.044849050754237396
ALSDGVHKI	9	Unmodified	_ALSDGVHKI_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2651062011719	2	470.266542	938.51853	-0.21343	-0.00010037	0.22687	0.00010669	0.013443	6.322E-06	470.26661537718843	33.466	0.38454	33.266	33.171	33.555	-0.20019					15	9	2	0	0	0	0.067814	1	2389	2389		122.18	5.2724	1	1186300			2429	6655	1494	1497	3098	3098					0.0468118727176261
ALSDGVHKI	9	Unmodified	_ALSDGVHKI_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.26605224609375	2	470.266542	938.51853	-1.2987	-0.00061073	1.2779	0.00060097	-0.020752	-9.7591E-06	470.2670390422765	33.423	0.39999	33.257	33.117	33.517	-0.16565					20	9	3	0	0	0	0.26966	1	2371	2371		79.713	0.26157	1	959970			2430	6655	1494	1497	3099	3099					0.0468118727176261
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.7767944335938	2	534.777274	1067.53999	-0.42283	-0.00022612	-0.75336	-0.00040288	-1.1762	-0.000629	534.7769826034885	46.374	1.4071	46.374	46.09	47.497	0					76	38	2	0	0	0	0.12366	6	4567	4557;4567;4579;4591;4603;4615		105.27	36.482	1	44890000			2431	6124	1495	1498	3100;3101;3102;3103;3104;3105	3101					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.7769775390625	2	534.777274	1067.53999	-1.3736	-0.00073456	0.22689	0.00012134	-1.1467	-0.00061322	534.7775184589946	46.479	1.7843	46.327	45.823	47.607	-0.15157					133	49	6	0	0	0	0.088511	6	4567	4555;4567;4579;4592;4605;4618		114.59	41.55	1	46832000			2432	6124	1495	1498	3106;3107;3108;3109;3110;3111	3107					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.77685546875	2	534.777274	1067.53999	-0.61836	-0.00033069	-0.61453	-0.00032864	-1.2329	-0.00065932	534.7771041603027	46.351	1.4465	46.403	46.131	47.577	0.051395					103	40	3	0	0	0	0.12366	5	4517	4494;4504;4517;4529;4553		105.27	22.993	1	44502000			2433	6124	1495	1498	3112;3113;3114;3115;3116	3114					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7763061523438	2	534.777274	1067.53999	-0.17322	-9.2634E-05	-1.5927	-0.00085174	-1.7659	-0.00094437	534.7761426778841	46.35	1.4165	46.253	45.706	47.122	-0.096649					92	38	5	0	0	0	0.12366	4	4464	4441;4452;4464;4476		105.27	44.975	1	11892000			2434	6124	1495	1498	3117;3118;3119;3120	3119					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.776611328125	2	534.777274	1067.53999	-0.52437	-0.00028042	-0.90395	-0.00048341	-1.4283	-0.00076383	534.7764967381603	46.633	1.5066	46.372	45.739	47.246	-0.26118					87	40	4	0	0	0	0.088511	4	4492	4470;4481;4492;4504		114.59	48.157	1	11007000			2435	6124	1495	1498	3121;3122;3123;3124	3123					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.7771606445312	2	534.777274	1067.53999	-1.0749	-0.00057484	-1.1611	-0.00062093	-2.236	-0.0011958	534.7763757201857	46.485	1.0309	46.283	45.706	46.737	-0.20226					74	28	4	0	0	0	0.062871	4	4464	4452;4464;4475;4487		123.99	52.111	1	12181000			2436	6124	1495	1498	3125;3126;3127;3128	3126					0.008925723004722386
ALSDLEITL	9	Unmodified	_ALSDLEITL_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7724609375	2	487.773865	973.533177	-0.30594	-0.00014923	1.1013	0.00053717	0.79532	0.00038794	487.7743254816327	85.655	0.45175	85.597	85.355	85.807	-0.057617					28	10	3	0	0	0	0.25032	1	10722	10722		82.305	8.3303	1	2297300			2437	1515	1496	1499	3129	3129					0.04535214629231632
ALSDLEITL	9	Unmodified	_ALSDLEITL_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.77264404296875	2	487.773865	973.533177	-1.1705	-0.00057093	2.0094	0.00098012	0.8389	0.00040919	487.77477740607304	85.604	0.53491	85.628	85.367	85.902	0.024078					32	12	3	0	0	0	0.17455	2	10658	10658;10668		94.006	8.6469	1	3471000			2438	1515	1496	1499	3130;3131	3130					0.04535214629231632
ALSDLEITL	9	Unmodified	_ALSDLEITL_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.77301025390625	2	487.773865	973.533177	0.1009	4.9218E-05	0.093272	4.5496E-05	0.19418	9.4714E-05	487.7738171943202	85.762	1.0746	85.567	85.215	86.29	-0.19508					53	24	3	0	0	0	0.43973	1	10389	10389		63.306	0	1	1490700			2439	1515	1496	1499	3132	3132					0.04535214629231632
ALSDLEITL	9	Unmodified	_ALSDLEITL_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.77325439453125	2	487.773865	973.533177	0.77159	0.00037636	-0.76823	-0.00037472	0.0033532	1.6356E-06	487.7733824151196	85.689	1.5032	85.539	85.201	86.704	-0.14967					66	34	3	0	0	0	0.17455	2	10401	10389;10401		94.006	17.16	1	2491300			2440	1515	1496	1499	3133;3134	3134					0.04535214629231632
ALSDLEITL	9	Unmodified	_ALSDLEITL_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7735900878906	2	487.773865	973.533177	0.60838	0.00029675	-0.58387	-0.0002848	0.024516	1.1958E-05	487.7734926861305	85.696	1.7137	85.559	85.197	86.911	-0.13753					71	39	3	0	0	0	0.13494	3	10387	10375;10387;10400		102.77	8.7669	1	3167900			2441	1515	1496	1499	3135;3136;3137	3136					0.04535214629231632
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7483825683594	2	471.748182	941.481811	0.12248	5.778E-05	-0.44258	-0.00020879	-0.3201	-0.000151	471.74793845114993	45.264	1.4451	45.264	44.827	46.273	0					85	41	3	0	0	0	0.013805	4	4387	4376;4387;4401;4413		167.82	79.182	1	9057700			2442	3068	1497	1500	3138;3139;3140;3141	3139					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7491760253906	2	471.748182	941.481811	-0.12143	-5.7284E-05	-0.074643	-3.5213E-05	-0.19607	-9.2496E-05	471.7481190588537	45.38	1.6158	45.231	44.697	46.313	-0.1488					93	46	3	0	0	0	0.049585	4	4371	4371;4381;4394;4408		128.86	57.483	1	9246400			2443	3068	1497	1500	3142;3143;3144;3145	3142					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7486572265625	2	471.748182	941.481811	0.27443	0.00012946	-0.54684	-0.00025797	-0.27241	-0.00012851	471.74788722483834	45.252	1.4428	45.295	44.824	46.267	0.043877					91	41	3	0	0	0	0.016838	4	4318	4308;4318;4331;4343		152.63	63.99	1	9137700			2444	3068	1497	1500	3146;3147;3148;3149	3147					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.748046875	2	471.748182	941.481811	-0.19169	-9.0431E-05	0.045843	2.1627E-05	-0.14585	-6.8804E-05	471.7480795745149	45.393	1.0947	45.294	44.789	45.884	-0.099449					65	30	4	0	0	0	0.096521	1	4302	4302		111.65	47.441	1	4358500			2445	3068	1497	1500	3150	3150					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.7475280761719	2	471.748182	941.481811	0.070463	3.3241E-05	-0.2537	-0.00011968	-0.18324	-8.6443E-05	471.74794316923783	45.559	0.84278	45.306	44.905	45.748	-0.25252					63	23	4	0	0	0	0.016838	2	4308	4308;4321		152.63	70.328	1	4075700			2446	3068	1497	1500	3151;3152	3151					0.008728906551937143
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.7480773925781	2	471.748182	941.481811	-0.75502	-0.00035618	0.61382	0.00028957	-0.1412	-6.6611E-05	471.74838147340796	45.479	0.67518	45.268	45.022	45.698	-0.21109					54	19	4	0	0	0	0.016838	1	4303	4303		152.63	63.99	1	4748900			2447	3068	1497	1500	3153	3153					0.008728906551937143
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2845764160156	2	473.2844	944.554247	0.47822	0.00022633	-0.30983	-0.00014664	0.16839	7.9697E-05	473.28416443892485	50.644	1.1596	50.644	50.341	51.501	0					76	32	4	0	0	0	0.062622	3	5339	5315;5326;5339		124.08	29.66	1	6775000			2448	4122	1498	1501	3154;3155;3156	3156					0.079752247287729
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2842712402344	2	473.2844	944.554247	0.34046	0.00016114	-0.17048	-8.0687E-05	0.16998	8.0449E-05	473.28421399682475	50.865	1.0497	50.716	50.425	51.475	-0.14916					70	29	4	0	0	0	0.094442	2	5332	5321;5332		112.41	29.66	1	6248900			2449	4122	1498	1501	3157;3158	3158					0.079752247287729
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.28448486328125	2	473.2844	944.554247	0.11983	5.6713E-05	0.061179	2.8955E-05	0.18101	8.5668E-05	473.2843277234474	50.536	1.2286	50.617	50.276	51.505	0.08099					78	34	4	0	0	0	0.03666	4	5245	5221;5233;5245;5258		136.27	32.211	1	7036200			2450	4122	1498	1501	3159;3160;3161;3162	3161					0.079752247287729
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2845458984375	2	473.2844	944.554247	0.53902	0.00025511	-0.32706	-0.00015479	0.21196	0.00010032	473.2841435882249	50.73	0.55574	50.618	50.341	50.896	-0.11163					42	14	4	0	0	0	0.10464	2	5179	5179;5192		109.48	18.877	1	3159300			2451	4122	1498	1501	3163;3164	3163					0.079752247287729
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.2844	944.554247	0.40041	0.00018951	-0.40312	-0.00019079	-0.0027145	-1.2847E-06	473.2841064184948	50.96	0.59735	50.684	50.407	51.004	-0.27643	0.027389	-0.00019624	NaN	136.27	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2715000			2452	4122	1498	1501							0.079752247287729
ALSEKIVSV	9	Unmodified	_ALSEKIVSV_					0	0	0		ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	ENSG00000125633|ENST00000376300|CCDC93	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.2844	944.554247	0.31278	0.00014804	-0.30241	-0.00014312	0.010377	4.9113E-06	473.284176020354	50.84	0.87085	50.659	50.39	51.261	-0.18071	0.003165	-0.0001009	NaN	136.27	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2410100			2453	4122	1498	1501							0.079752247287729
ALSEQILMV	9	Unmodified	_ALSEQILMV_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.27838134765625	2	502.27826	1002.54197	-0.16822	-8.4492E-05	0.53664	0.00026954	0.36842	0.00018505	502.2782473635694	79.728	0.87869	79.578	79.152	80.031	-0.15051					51	20	4	0	0	0	0.20967	2	9544	9532;9544		87.754	13.499	1	943080			2454	8984	1499	1502	3165;3166	3166					0.040798649940711584
ALSEQILMV	9	Unmodified	_ALSEQILMV_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.27826	1002.54197	-1.1805	-0.00059296	1.1026	0.00055382	-0.077922	-3.9139E-05	502.2785061530776	79.931	0.96208	79.758	79.192	80.154	-0.17226	0.12012	0.0012258	NaN	87.754	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423860			2455	8984	1499	1502							0.040798649940711584
ALSEQILMV	9	Unmodified	_ALSEQILMV_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	502.27826	1002.54197	0.55993	0.00028124	-0.45552	-0.0002288	0.10441	5.2441E-05	502.2779297665883	79.865	0.75435	79.619	79.278	80.032	-0.2465	-0.019204	-0.00033942	NaN	87.754	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	967760			2456	8984	1499	1502							0.040798649940711584
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.75054931640625	2	463.750724	925.486896	0.18621	8.6357E-05	-1.8005	-0.00083498	-1.6143	-0.00074862	463.7504057013664	42.323	1.1106	42.323	41.856	42.967	0					71	31	4	0	0	0	0.040175	3	3877	3877;3889;3902		133.47	42.71	1	7956000			2457	9156	1500	1503	3167;3168;3169	3167					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7506408691406	2	463.750724	925.486896	-0.030796	-1.4282E-05	-1.8548	-0.00086017	-1.8856	-0.00087445	463.75058680839567	42.463	1.2446	42.331	41.789	43.034	-0.1322					68	35	4	0	0	0	0.062871	4	3895	3884;3895;3907;3923		123.99	35.346	1	7661500			2458	9156	1500	1503	3170;3171;3172;3173	3171					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7506103515625	2	463.750724	925.486896	0.55705	0.00025833	-1.8497	-0.00085779	-1.2926	-0.00059946	463.75034115819335	42.414	1.1186	42.44	41.993	43.111	0.026012					76	31	4	0	0	0	0.062871	3	3859	3834;3846;3859		123.99	37.252	1	7572100			2459	9156	1500	1503	3174;3175;3176	3176					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.7506408691406	2	463.750724	925.486896	-0.018053	-8.3723E-06	-0.26793	-0.00012425	-0.28598	-0.00013262	463.75058429450155	42.447	1.0239	42.324	42.037	43.061	-0.12299					80	26	5	0	0	0	0.021668	3	3838	3826;3838;3850		148.21	62.847	1	15715000			2460	9156	1500	1503	3177;3178;3179	3178					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.7505798339844	2	463.750724	925.486896	-0.35243	-0.00016344	0.019677	9.1251E-06	-0.33275	-0.00015431	463.75073173826087	42.636	1.0629	42.404	42.079	43.142	-0.23186					86	27	5	0	0	0	0.028181	4	3849	3837;3849;3862;3877		143.02	28.434	1	16285000			2461	9156	1500	1503	3180;3181;3182;3183	3181					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.7507629394531	2	463.750724	925.486896	-0.46366	-0.00021502	0.036503	1.6928E-05	-0.42716	-0.0001981	463.7507278091489	42.65	0.99206	42.424	42.105	43.097	-0.22597					86	25	5	0	0	0	0.021668	3	3837	3837;3850;3862		148.21	46.994	1	15180000			2462	9156	1500	1503	3184;3185;3186	3184					0.02117194517813914
ALSGHVSTV	9	Unmodified	_ALSGHVSTV_					0	0	0		ENSG00000119509|ENST00000262457|INVS;nc|ENSG00000119509|Q9Y283-2|INVS	ENSG00000119509|ENST00000262457|INVS	ENSG00000119509|ENST00000262457|INVS	MSMS	OPSCC_39_ClassI_Rep-1	1	435.73944091796875	2	435.737617	869.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.712	1	33.712	33.212	34.212	0								0	0	0	0.1457	1	2457	2457		82.305	28.954	1				2463	3741	1501	1504	3187	3187					0.02072925346340071
ALSGTCEQRG	10	Unmodified	_ALSGTCEQRG_					0	0	0		ENST00000321442.9_1_5:174905557-174919132:+|nuORF	ENST00000321442.9_1_5:174905557-174919132:+|nuORF	ENST00000321442.9_1_5:174905557-174919132:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.24053955078125	2	511.240198	1020.46584	-0.28492	-0.00014566	1.4215	0.00072671	1.1365	0.00058105	511.2406163704822	59.559	0.77736	59.645	59.241	60.018	0.085682					60	20	4	0	0	0	1.0616	1	6725	6725		37.812	1.3648	1	2151500			2464	12208	1502	1505	3188	3188					-0.04357138853356446
ALSHGLTAYW	10	Unmodified	_ALSHGLTAYW_					0	0	0		ENST00000367081.7_1_6:159185637-159185862:+|nuORF	ENST00000367081.7_1_6:159185637-159185862:+|nuORF	ENST00000367081.7_1_6:159185637-159185862:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.8173217773438	2	559.785099	1117.55564	-1.0512	-0.00058842	-3.2478	-0.0018181	-4.299	-0.0024065	559.7830745356445	38.043	0.38139	37.825	37.607	37.988	-0.21849					25	10	3	0	0	0	0.03519	1	3073	3073		27.882	17.617	1	513420			2465	12838	1503	1506	3189	3189					0.0015685881751323905
ALSHGYRVV	9	Unmodified	_ALSHGYRVV_					0	0	0			REV__ENSG00000088812|ENST00000262919|ATRN	REV__ENSG00000088812|ENST00000262919|ATRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2904968261719	2	501.279983	1000.54541	0.70273	0.00035226	-1.6149	-0.00080949	-0.91213	-0.00045723	501.2793105474861	84.745	0.37452	84.586	84.364	84.738	-0.15868					16	8	3	0	0	0	0.024436	1	10282	10282		23.042	0	1	325180	+		2466	20822	1504	1507	3190	3190					0.04516295882956456
ALSILQQP	8	Unmodified	_ALSILQQP_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.77978515625	2	435.258185	868.501818	-0.10699	-4.6569E-05	3.7647	0.0016386	3.6577	0.0015921	435.2591455093199	36.545	0.7695	36.34	35.953	36.723	-0.20518					29	19	2	0	0	0	0.027866	1	2861	2861		30.504	0	1	219210			2467	186;187	1505	1508	3191	3191					0.06230686385811168
ALSKPDLIT	9	Unmodified	_ALSKPDLIT_					0	0	0		ENSG00000167232|ENST00000300619|ZNF91;ENST00000596989.1_1_19:23491864-23578234:-|nuORF	ENSG00000167232|ENST00000300619|ZNF91	ENSG00000167232|ENST00000300619|ZNF91	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2948913574219	2	479.2844	956.554247	0.64562	0.00030944	-0.080881	-3.8765E-05	0.56474	0.00027067	479.28429000459124	72.42	0.78904	72.429	71.988	72.777	0.0097733					25	19	2	0	0	0	0.024261	1	8748	8748		37.812	0	1	169790			2468	7663	1506	1509	3192	3192					0.0742322472875685
ALSKPVVTI	9	Unmodified	_ALSKPVVTI_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2972717285156	2	464.29731	926.580068	-0.4742	-0.00022017	0.62675	0.000291	0.15255	7.0828E-05	464.297463744517	84.868	0.79057	84.796	84.507	85.298	-0.072777					45	18	3	0	0	0	0.84115	1	10620	10620		36.447	0.82846	1	1892600	+		2469	25209	1507	1510	3193	3193					0.11384118971056978
ALSLELPLL	9	Unmodified	_ALSLELPLL_					0	0	0			REV__ENSG00000162490|ENST00000294485|DRAXIN	REV__ENSG00000162490|ENST00000294485|DRAXIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7615661621094	2	484.804968	967.595384	-0.27405	-0.00013286	-1.8655	-0.00090438	-2.1395	-0.0010372	484.804064084393	37.316	0.45201	37.348	37.035	37.487	0.032269					18	11	2	0	0	0	0.024487	1	2960	2960		11.511	0	1	171420	+		2470	25447	1508	1511	3194	3194					0.11028985768246002
ALSLTQMAKP	10	Unmodified	_ALSLTQMAKP_					0	0	0		ENSG00000165185|ENST00000337530|KIAA1958;nc|ENSG00000165185|Q8N8K9-2|KIAA1958;nc|ENSG00000165185|Q8N8K9-3|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3113403320312	2	530.296985	1058.57942	-0.7616	-0.00040387	1.0391	0.00055102	0.27747	0.00014714	530.2966246207818	60.83	0.75949	60.576	60.132	60.891	-0.25373					38	18	3	0	0	0	0.03519	1	6751	6751		44.117	0	1	290680			2471	7375	1509	1512	3195	3195					0.052469562596797914
ALSLWTHR	8	Unmodified	_ALSLWTHR_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENSG00000187741|ENST00000389301|FANCA;ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENSG00000187741|ENST00000389301|FANCA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.27264404296875	2	492.274701	982.534849	-0.41217	-0.0002029	-4.0113	-0.0019746	-4.4234	-0.0021775	492.27291826748143	23.509	1.2729	23.585	23.272	24.545	0.076239					94	28	6	0	0	0	0.91239	1	943	943		50.025	0.58299	1	13967000			2472	9654;11991	1510	1513	3196	3196					0.04288313228516927
ALSNGVLGLVF	11	Unmodified	_ALSNGVLGLVF_					0	0	0			REV__ENSG00000162881|ENST00000378661|OXER1	REV__ENSG00000162881|ENST00000378661|OXER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3164672851562	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.99553	1	11194	11194		37.812	7.4938	1	17068000	+		2473	25502	1511	1514	3197	3197					0.08222889028479585
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.79815673828125	2	493.797675	985.580796	0.10732	5.2992E-05	0.40447	0.00019973	0.51179	0.00025272	493.79762710401	61.015	0.64442	61.015	60.73	61.374	0					39	16	4	0	0	0	0.12914	1	7048	7048		104.06	10.861	1	3230000			2474	6119	1512	1515	3198	3198					0.08742913620085346
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.79803466796875	2	493.797675	985.580796	-0.11468	-5.6627E-05	0.76311	0.00037682	0.64844	0.0003202	493.7977888259066	61.26	0.59386	61.046	60.794	61.387	-0.21453					41	15	4	0	0	0	0.086035	2	7046	7046;7056		115.49	25.124	1	3261500			2475	6119	1512	1515	3199;3200	3199					0.08742913620085346
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.79766845703125	2	493.797675	985.580796	-0.46304	-0.00022865	0.95673	0.00047243	0.49369	0.00024378	493.7979525577233	60.934	0.68297	61.005	60.751	61.434	0.071129					38	17	4	0	0	0	0.048057	2	6948	6948;6960		129.42	33.606	1	2828700			2476	6119	1512	1515	3201;3202	3201					0.08742913620085346
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7976989746094	2	493.797675	985.580796	-0.47941	-0.00023673	0.64972	0.00032083	0.17031	8.4096E-05	493.7978125003728	61.235	0.52876	61.029	60.772	61.301	-0.20599					39	12	4	0	0	0	0.062622	2	6846	6836;6846		124.08	25.451	1	2639900			2477	6119	1512	1515	3203;3204	3204					0.08742913620085346
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.79730224609375	2	493.797675	985.580796	-0.83245	-0.00041106	0.88124	0.00043515	0.048792	2.4094E-05	493.7979099150007	61.15	0.6533	60.974	60.635	61.289	-0.1761					40	15	4	0	0	0	0.094442	2	6827	6827;6838		112.41	27.25	1	2403100			2478	6119	1512	1515	3205;3206	3205					0.08742913620085346
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	ENST00000546255.1_1_11:63979177-63987262:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.79766845703125	2	493.797675	985.580796	-0.58375	-0.00028825	0.57008	0.0002815	-0.013671	-6.7508E-06	493.79777295901334	61.286	0.73159	61.029	60.732	61.464	-0.25725					40	17	4	0	0	0	0.041068	3	6831	6831;6841;6853		132.76	31.157	1	2670300			2479	6119	1512	1515	3207;3208;3209	3207					0.08742913620085346
ALSNLEVTL	9	Unmodified	_ALSNLEVTL_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2739562988281	2	480.274032	958.533512	-0.036501	-1.7531E-05	-0.076144	-3.657E-05	-0.11265	-5.4101E-05	480.2739971032933	76.016	1.5747	75.743	75.186	76.761	-0.27266					98	38	5	0	0	0	0.047345	1	9005	9005		129.68	9.0616	1	3149500			2480	2310	1513	1516	3210	3210					0.05258634349092972
ALSPEIKEAI	10	Unmodified	_ALSPEIKEAI_					0	0	0		nc|ENSG00000080644|P32297-3|CHRNA3;nc|ENSG00000080644|P32297-1|CHRNA3;ENSG00000080644|ENST00000326828|CHRNA3	nc|ENSG00000080644|P32297-3|CHRNA3	nc|ENSG00000080644|P32297-3|CHRNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2670288085938	2	535.808239	1069.60193	-0.55048	-0.00029495	-0.56033	-0.00030023	-1.1108	-0.00059518	535.80681543612	54.782	0.51972	54.632	54.409	54.929	-0.15036					21	14	2	0	0	0	0.03519	1	5975	5975		36.447	13.404	1	213330			2481	1692	1514	1517	3211	3211					0.06990878928945676
ALSPHNILL	9	Unmodified	_ALSPHNILL_					0	0	0		TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2920227050781	2	489.292559	976.570566	-0.82557	-0.00040395	0.40019	0.00019581	-0.42538	-0.00020814	489.29262546428146	60.586	0.85157	60.586	60.219	61.07	0					57	22	3	0	0	0	0.067814	2	6981	6969;6981		122.18	10.528	1	3384200			2482	5807	1515	1518	3212;3213	3213					0.0813435068552053
ALSPHNILL	9	Unmodified	_ALSPHNILL_					0	0	0		TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.29254150390625	2	489.292559	976.570566	-0.67101	-0.00032832	0.26481	0.00012957	-0.4062	-0.00019875	489.2925351346388	60.823	0.96723	60.609	60.235	61.202	-0.21339					64	25	3	0	0	0	0.096521	2	6991	6974;6991		111.65	23.005	1	3453700			2483	5807	1515	1518	3214;3215	3215					0.0813435068552053
ALSPHNILL	9	Unmodified	_ALSPHNILL_					0	0	0		TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2924499511719	2	489.292559	976.570566	-1.9926	-0.00097495	1.5892	0.00077758	-0.40339	-0.00019737	489.29319072066437	60.503	0.93824	60.582	60.165	61.103	0.078888					63	24	3	0	0	0	0.082191	2	6878	6878;6894		116.9	28.261	1	3458900			2484	5807	1515	1518	3216;3217	3216					0.0813435068552053
ALSPHNILL	9	Unmodified	_ALSPHNILL_					0	0	0		TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.292559	976.570566	-0.6076	-0.00029729	-0.73663	-0.00036043	-1.3442	-0.00065772	489.2918845309439	60.751	0.91826	60.545	60.131	61.05	-0.20599	-0.032126	-0.0013044	NaN	122.18	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659440			2485	5807	1515	1518							0.0813435068552053
ALSPHNILL	9	Unmodified	_ALSPHNILL_					0	0	0		TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.292559	976.570566	-0.85394	-0.00041783	-0.36144	-0.00017685	-1.2154	-0.00059468	489.29203643097566	60.694	0.88169	60.518	60.156	61.038	-0.1761	-0.059343	-0.00093728	NaN	122.18	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	716980			2486	5807	1515	1518							0.0813435068552053
ALSPHNILL	9	Unmodified	_ALSPHNILL_					0	0	0		TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.292559	976.570566	-0.52139	-0.00025511	-0.88122	-0.00043118	-1.4026	-0.00068629	489.2917897490751	60.875	0.75963	60.621	60.212	60.971	-0.25373	0.044472	-0.0014459	NaN	122.18	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804210			2487	5807	1515	1518							0.0813435068552053
ALSPINIQL	9	Unmodified	_ALSPINIQL_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7925109863281	2	484.792392	967.570232	-0.83598	-0.00040528	0.87621	0.00042478	0.040233	1.9505E-05	484.7926230088773	83.584	0.81854	83.584	83.266	84.084	0					41	18	3	0	0	0	0.077175	1	10468	10468		118.74	12.328	1	1691500			2488	5703	1516	1519	3218	3218					0.08514930965668555
ALSPINIQL	9	Unmodified	_ALSPINIQL_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.79205322265625	2	484.792392	967.570232	-0.45369	-0.00021995	0.44632	0.00021637	-0.007376	-3.5758E-06	484.79247260785	83.649	0.85901	83.558	83.215	84.074	-0.090454					40	19	3	0	0	0	0.033448	2	10417	10417;10427		138.83	5.3564	1	1644800			2489	5703	1516	1519	3219;3220	3219					0.08514930965668555
ALSPINIQL	9	Unmodified	_ALSPINIQL_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MSMS	OPSCC_39_ClassI_Rep-3	3	484.7925720214844	2	484.792392	967.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.457	1	83.483	82.983	83.983	0.026558								0	0	0	0.014439	1	10358	10358		143.11	9.6378	1				2490	5703	1516	1519	3221	3221					0.08514930965668555
ALSPINIQL	9	Unmodified	_ALSPINIQL_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MSMS	OPSCC_39_ClassI_Rep-3	3	484.7923278808594	2	484.792392	967.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.529	1	83.555	83.055	84.055	0.026558								0	0	0	0.014439	1	10368	10368		143.11	23.55	1				2491	5703	1516	1519	3222	3222					0.08514930965668555
ALSPINIQL	9	Unmodified	_ALSPINIQL_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.792392	967.570232	0.7401	0.00035879	0.03566	1.7288E-05	0.77576	0.00037608	484.79195204974036	83.564	0.46646	83.352	83.092	83.558	-0.21159	-0.092511	-0.00039665	NaN	138.83	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175840			2492	5703	1516	1519							0.08514930965668555
ALSPINIQL	9	Unmodified	_ALSPINIQL_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.792392	967.570232	0.49325	0.00023912	-0.26929	-0.00013055	0.22396	0.00010858	484.79204778621335	83.518	0.54158	83.349	83.119	83.66	-0.16915	-0.095956	-0.00069232	NaN	138.83	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230290			2493	5703	1516	1519							0.08514930965668555
ALSPINIQL	9	Unmodified	_ALSPINIQL_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000493315.1_1_2:63631156-63711794:-|nuORF;nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.792392	967.570232	0.38791	0.00018805	-0.21262	-0.00010308	0.17529	8.4979E-05	484.7920931046821	83.52	0.63277	83.381	83.124	83.757	-0.13861	-0.063527	-0.00063737	NaN	138.83	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159600			2494	5703	1516	1519							0.08514930965668555
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.743408203125	2	490.743431	979.472308	-0.40126	-0.00019692	-0.44612	-0.00021893	-0.84738	-0.00041585	490.743278686451	31.637	1.3845	31.637	31.257	32.642	0					92	34	5	0	0	0	0.067814	4	2102	2102;2112;2123;2147		122.18	19.75	1	13459000			2495	10784	1517	1520	3223;3224;3225;3226	3223					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.7431640625	2	490.743431	979.472308	-0.28997	-0.0001423	-0.51988	-0.00025513	-0.80985	-0.00039743	490.7432328390175	31.54	1.4676	31.552	31.127	32.594	0.011799					100	36	4	0	0	0	0.10174	4	2089	2079;2089;2101;2129		110.12	6.1172	1	14520000			2496	10784	1517	1520	3227;3228;3229;3230	3228					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.743408203125	2	490.743431	979.472308	-0.48787	-0.00023942	-0.42416	-0.00020815	-0.91203	-0.00044757	490.743295951803	31.277	1.2191	31.346	30.912	32.131	0.068962					91	29	5	0	0	0	0.12602	6	2000	2000;2009;2020;2032;2045;2059		104.75	18.917	1	13619000			2497	10784	1517	1520	3231;3232;3233;3234;3235;3236	3231					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.74322509765625	2	490.743431	979.472308	-0.53266	-0.0002614	0.19359	9.5004E-05	-0.33907	-0.0001664	490.74342273542754	31.71	1.0136	31.469	31.112	32.126	-0.24109					69	24	5	0	0	0	0.2508	1	2120	2120		82.241	14.747	1	2665900			2498	10784	1517	1520	3237	3237					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7430725097656	2	490.743431	979.472308	-0.009111	-4.4712E-06	-0.42073	-0.00020647	-0.42984	-0.00021094	490.7431420452156	31.605	1.1138	31.42	31.099	32.213	-0.18503					65	26	4	0	0	0	0.067814	1	2123	2123		122.18	23.547	1	2273100			2499	10784	1517	1520	3238	3238					-0.01824877630338051
ALSPNNHEV	9	Unmodified	_ALSPNNHEV_					0	0	0		ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	ENSG00000241685|ENST00000262942|ARPC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.7432861328125	2	490.743431	979.472308	-0.23576	-0.0001157	-0.22761	-0.0001117	-0.46336	-0.00022739	490.74324197801667	31.655	0.92322	31.503	31.161	32.084	-0.15231					61	22	4	0	0	0	0.086035	1	2100	2100		115.49	27.798	1	2538400			2500	10784	1517	1520	3239	3239					-0.01824877630338051
ALSPPQLAPGV	11	Unmodified	_ALSPPQLAPGV_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3052368164062	2	525.303124	1048.5917	-0.44087	-0.00023159	0.12179	6.3977E-05	-0.31908	-0.00016761	525.3030313874978	65.634	0.78345	65.393	65.045	65.828	-0.24145					54	18	4	0	0	0	0.96599	1	7516	7516		44.377	0	1	1985400	+		2501	37079	1518	1521	3240	3240					0.06934315994362805
ALSPQRSP	8	Unmodified	_ALSPQRSP_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2;CHPF2|p.P637S|1|0.09|ENSG00000033100|chr7:151238271-151238271|C/T|missense_variant	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2364196777344	2	428.237784	854.461016	-0.64663	-0.00027691	0.82931	0.00035514	0.18268	7.8233E-05	428.23802944476233	29.711	1.1416	29.789	29.489	30.63	0.078344					59	27	4	0	0	0	0.62178	1	1794	1794		74.255	5.4682	1	1355900			2502	1020	1519	1522	3241	3241					0.027963450661900424
ALSPSAMCLC	10	Unmodified	_ALSPSAMCLC_					0	0	0		KRTAP10-10|p.C90Afs*177|1|0.34|ENSG00000221859|chr21:44637680-44637680|C/-|frameshift_variant	KRTAP10-10|p.C90Afs*177|1|0.34|ENSG00000221859|chr21:44637680-44637680|C/-|frameshift_variant	KRTAP10-10|p.C90Afs*177|1|0.34|ENSG00000221859|chr21:44637680-44637680|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2685241699219	2	498.221574	994.428594	-0.24285	-0.00012099	-0.98856	-0.00049252	-1.2314	-0.00061352	498.22098865972606	36.826	1.0331	36.864	36.199	37.232	0.038044					45	27	2	0	0	0	0.03519	1	2845	2845		44.117	0	1	311210			2503	17809	1520	1523	3242	3242					-0.06884269714987568
ALSQDIPEI	9	Unmodified	_ALSQDIPEI_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2631530761719	2	493.263665	984.512776	0.90884	0.0004483	-0.93341	-0.00046042	-0.024572	-1.2121E-05	493.2632028296755	71.047	1.3707	71.047	70.569	71.94	0					95	34	5	0	0	0	0.10174	1	8612	8612		110.12	33.346	1	11696000			2504	1052	1521	1524	3243	3243					0.01990043969431099
ALSQDIPEI	9	Unmodified	_ALSQDIPEI_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2640380859375	2	493.263665	984.512776	-0.011324	-5.586E-06	0.12152	5.9939E-05	0.11019	5.4353E-05	493.26372478067407	71.143	1.5242	71.154	70.465	71.989	0.010735					97	38	4	0	0	0	0.1158	2	8540	8540;8567		107.01	11.192	1	11193000			2505	1052	1521	1524	3244;3245	3244					0.01990043969431099
ALSRATSL	8	Unmodified	_ALSRATSL_					0	0	0			REV__ENST00000257868.9_1_12:56143541-56143886:+|nuORF	REV__ENST00000257868.9_1_12:56143541-56143886:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2474060058594	2	409.74016	817.465767	0.814	0.00033353	-0.3395	-0.00013911	0.4745	0.00019442	409.7399547330241	37.136	0.51417	37.073	36.828	37.342	-0.063385					20	13	2	0	0	0	0.027866	1	3022	3022		47.916	0	1	708450	+		2506	29570	1522	1525	3246	3246					0.049732292089515795
ALSRESLVV	9	Unmodified	_ALSRESLVV_					0	0	0		nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-6|LSR	nc|ENSG00000105699|Q86X29-6|LSR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.28631591796875	2	487.287474	972.560395	-0.14919	-7.2699E-05	-0.56421	-0.00027493	-0.7134	-0.00034763	487.2870816013795	49.538	0.59512	49.387	49.113	49.708	-0.1512					40	15	5	0	0	0	0.45795	1	5104	5104		62.107	12.666	1	1576500			2507	2711	1523	1526	3247	3247					0.07301742960294177
ALSRESLVV	9	Unmodified	_ALSRESLVV_					0	0	0		nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-6|LSR	nc|ENSG00000105699|Q86X29-6|LSR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.287474	972.560395	-1.87	-0.00091122	1.2823	0.00062486	-0.58766	-0.00028636	487.28798919604924	49.247	0.63188	49.322	49.022	49.654	0.074196	-0.031814	0.0012234	NaN	62.107	41	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1658900			2508	2711	1523	1526							0.07301742960294177
ALSRKKVK	8	Unmodified	_ALSRKKVK_					0	0	0		ENST00000392784.6_1_12:109523736-109523829:+|nuORF	ENST00000392784.6_1_12:109523736-109523829:+|nuORF	ENST00000392784.6_1_12:109523736-109523829:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2870788574219	2	465.316369	928.618185	-1.2143	-0.00056501	1.61	0.00074917	0.39576	0.00018415	465.31695886011033	75.251	0.19321	75.251	75.076	75.269	0					7	4	2	0	0	0	0.027866	1	9204	9204		19.36	0	1	383250			2509	13427	1524	1527	3248	3248					0.15102049676374918
ALSRKVAKL	9	Unmodified	_ALSRKVAKL_					0	0	0		chrX:152767861-152769219|207|12.62|0.02|9.39|-|ENST00000457643|MAGEA6,MAGEA6;ENSG00000197172|ENST00000329342|MAGEA6	chrX:152767861-152769219|207|12.62|0.02|9.39|-|ENST00000457643|MAGEA6,MAGEA6	chrX:152767861-152769219|207|12.62|0.02|9.39|-|ENST00000457643|MAGEA6,MAGEA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3293762207031	2	493.329476	984.6444	-0.075884	-3.7436E-05	-0.25475	-0.00012568	-0.33064	-0.00016311	493.32930832383397	24.243	0.98577	24.068	23.612	24.598	-0.17484					64	22	5	0	0	0	0.83071	1	1063	1063		37.159	3.6435	1	4472200			2510	442	1525	1528	3249	3249					0.15146318847837392
ALSRPLDY	8	Unmodified	_ALSRPLDY_					0	0	0			REV__GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	REV__GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.268798828125	2	467.753267	933.491981	-0.26348	-0.00012324	0.68716	0.00032142	0.42369	0.00019818	467.75340127651066	56.79	0.59154	56.626	56.35	56.941	-0.16432					31	16	3	0	0	0	0.027866	1	6281	6281		40.573	4.1259	1	432490	+		2511	20055	1526	1529	3250	3250					0.022574983804133808
ALSRVSPKK	9	Unmodified	_ALSRVSPKK_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.28094482421875	2	493.311284	984.608014	-0.43282	-0.00021352	0.17304	8.5365E-05	-0.25978	-0.00012815	493.3111521212861	21.498	0.57667	21.569	21.303	21.879	0.071487					20	11	2	0	0	0	0.024457	1	613	613		45.952	6.9305	1	87531	+		2512	27006	1527	1530	3251	3251					0.11509441951136523
ALSRVSPKK	9	Unmodified	_ALSRVSPKK_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.311284	984.608014	-0.49692	-0.00024513	0.19501	9.6201E-05	-0.3019	-0.00014893	493.31121147474374	21.484	0.5262	21.484	21.293	21.819	0	-0.025735	1.9941E-05	NaN	45.952	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81074	+		2513	27006	1527	1530							0.11509441951136523
ALSSAVPANL	10	Unmodified	_ALSSAVPANL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.28192138671875	2	471.766374	941.518196	0.87112	0.00041097	-0.71783	-0.00033865	0.15329	7.2316E-05	471.765624637658	51.453	0.61081	51.269	51.058	51.669	-0.18404					28	15	3	0	0	0	0.03519	1	5262	5262		23.523	16.787	1	218720			2514	8901	1528	1531	3252	3252					0.04509767551905952
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.77911376953125	2	462.779285	923.544017	0.25774	0.00011927	-0.46522	-0.0002153	-0.20749	-9.602E-05	462.77902546509887	67.748	1.569	67.748	67.408	68.977	0					99	40	4	0	0	0	0.033883	4	8083	8083;8092;8104;8117		138.48	0	1	9730100			2515	15278	1529	1532	3253;3254;3255;3256	3253					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7794494628906	2	462.779285	923.544017	0.23249	0.00010759	-0.39532	-0.00018295	-0.16283	-7.5354E-05	462.7790760240138	68.131	1.3943	67.843	67.47	68.864	-0.28834					86	35	4	0	0	0	0.016588	4	8103	8103;8113;8124;8136		153.88	0	1	10953000			2516	15278	1529	1532	3257;3258;3259;3260	3257					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.77947998046875	2	462.779285	923.544017	0.86261	0.0003992	-0.97045	-0.0004491	-0.10784	-4.9908E-05	462.7788030510117	67.891	1.9205	67.91	67.549	69.469	0.018913					101	50	4	0	0	0	0.040175	4	8018	8018;8028;8040;8052		133.47	0	1	9360500			2517	15278	1529	1532	3261;3262;3263;3264	3261					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.7796630859375	2	462.779285	923.544017	0.90628	0.00041941	-0.77471	-0.00035852	0.13157	6.0887E-05	462.7788026254011	68.043	0.97566	67.788	67.455	68.431	-0.25517					60	23	4	0	0	0	0.062871	4	7853	7830;7840;7853;7866		123.99	0	1	2106100			2518	15278	1529	1532	3265;3266;3267;3268	3267					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.7796936035156	2	462.779285	923.544017	0.24305	0.00011248	-0.007102	-3.2867E-06	0.23595	0.00010919	462.77913029983273	68.007	1.1692	67.773	67.387	68.557	-0.23376					63	28	4	0	0	0	0.033883	3	7842	7842;7854;7867		138.48	0	1	1915700			2519	15278	1529	1532	3269;3270;3271	3269					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.7796630859375	2	462.779285	923.544017	0.14274	6.6059E-05	-0.013616	-6.301E-06	0.12913	5.9758E-05	462.7791486577998	67.962	1.218	67.724	67.334	68.552	-0.23814					62	29	4	0	0	0	0.14199	2	7844	7832;7844		101.21	0	1	1918200			2520	15278	1529	1532	3272;3273	3273					0.0791866179419003
ALSSVIKEL	9	Unmodified	_ALSSVIKEL_					0	0	0		ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2924499511719	2	480.292225	958.569897	0.58336	0.00028018	2.299	0.0011042	2.8823	0.0013844	480.29200331079295	61.352	1.0882	61.352	60.921	62.009	0					60	28	4	0	0	0	0.17845	1	7102	7102		93.143	16.369	1	1323500			2521	10388	1530	1533	3274	3274					0.08895511245816579
ALSSVIKEL	9	Unmodified	_ALSSVIKEL_					0	0	0		ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.29278564453125	2	480.292225	958.569897	0.45921	0.00022056	3.0474	0.0014637	3.5066	0.0016842	480.2920143710229	61.636	1.1506	61.41	60.899	62.049	-0.22663					61	30	4	0	0	0	0.094442	1	7105	7105		112.41	24.657	1	998190			2522	10388	1530	1533	3275	3275					0.08895511245816579
ALSSVIKEL	9	Unmodified	_ALSSVIKEL_					0	0	0		ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	ENSG00000204899|ENST00000377818|MZT1	MSMS	OPSCC_39_ClassI_Rep-3	3	480.2925720214844	2	480.292225	958.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.296	1	61.368	60.868	61.868	0.071125								0	0	0	0.14369	1	7008	7008		82.75	20.643	1				2523	10388	1530	1533	3276	3276					0.08895511245816579
ALSVPLSLCV	10	Unmodified	_ALSVPLSLCV_					0	0	0		ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29083251953125	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	1.0271	1	10862	10862		42.396	6.7778	1	8460100			2524	16505	1531	1534	3277	3277					0.06244455373735036
ALSVPLSLCV	10	Unmodified	_ALSVPLSLCV_					0	0	0		ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2906188964844	2	501.288628	1000.5627	0.66236	0.00033203	2.9983	0.001503	3.6606	0.001835	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	1.1329	1	10089	10089		27.882	3.3631	1	3151900			2525	16505	1531	1534	3278	3278					0.06244455373735036
ALSVPLSLCV	10	Unmodified	_ALSVPLSLCV_					0	0	0		ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2901916503906	2	501.288628	1000.5627	0.41475	0.00020791	3.1647	0.0015864	3.5794	0.0017943	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	1.0781	1	10095	10095		35.618	1.4457	1	2920800			2526	16505	1531	1534	3279	3279					0.06244455373735036
ALSVPLSLCV	10	Unmodified	_ALSVPLSLCV_					0	0	0		ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	ENST00000546079.5_1_19:45496243-45496414:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29034423828125	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0271	1	10482	10482		42.396	5.237	1	10074000			2527	16505	1531	1534	3280	3280					0.06244455373735036
ALSVQVAAR	9	Unmodified	_ALSVQVAAR_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2455749511719	2	457.774534	913.534515	-1.0448	-0.00047828	2.1833	0.00099947	1.1385	0.00052118	457.7754001882651	24.827	0.58176	24.78	24.442	25.024	-0.047148					18	12	2	0	0	0	0.024292	1	1078	1078		40.778	12.896	1	113130			2528	11084	1532	1535	3281	3281					0.07428893508665624
ALSVQVAAR	9	Unmodified	_ALSVQVAAR_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.774534	913.534515	0.55045	0.00025198	-0.15193	-6.9549E-05	0.39852	0.00018243	457.7742402781251	24.73	0.45518	24.809	24.594	25.049	0.078344	0.027457	-0.00075915	NaN	40.778	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108620			2529	11084	1532	1535							0.07428893508665624
ALSVQVAAR	9	Unmodified	_ALSVQVAAR_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.774534	913.534515	-0.21442	-9.8156E-05	0.97471	0.0004462	0.76029	0.00034804	457.77450376423127	24.93	0.43984	24.755	24.511	24.95	-0.17484	-0.025978	0.00027234	NaN	40.778	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64180			2530	11084	1532	1535							0.07428893508665624
ALTAALAEQP	10	Unmodified	_ALTAALAEQP_					0	0	0			REV__ENST00000508276.1_1_4:2933242-2933551:-|nuORF	REV__ENST00000508276.1_1_4:2933242-2933551:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3018493652344	2	492.771657	983.528761	-0.2275	-0.00011211	0.01098	5.4105E-06	-0.21652	-0.0001067	492.77153089680843	56.95	1.0111	56.785	56.459	57.471	-0.16431					51	27	3	0	0	0	0.03519	1	6293	6293		39.253	0	1	3790300	+		2531	34062	1533	1536	3282	3282					0.036337502063247484
ALTALTVPP	9	Unmodified	_ALTALTVPP_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7681579589844	2	441.768386	881.522219	0.10055	4.4418E-05	-1.228	-0.00054249	-1.1275	-0.00049807	441.76794852794825	102.93	1.5122	102.8	102.45	103.96	-0.12723					102	35	5	0	0	0	0.88411	1	12759	12759		33.516	0	1	19625000	+		2532	24337	1534	1537	3283	3283					0.07671857045613706
ALTALTVPP	9	Unmodified	_ALTALTVPP_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.76806640625	2	441.768386	881.522219	-0.17194	-7.5957E-05	-0.7357	-0.00032501	-0.90764	-0.00040097	441.7681216130439	102.94	1.5731	102.81	102.45	104.03	-0.12783					93	37	5	0	0	0	0.88411	2	12815	12815;12852		33.516	0	1	25733000	+		2533	24337	1534	1537	3284;3285	3284					0.07671857045613706
ALTALTVPP	9	Unmodified	_ALTALTVPP_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7682189941406	2	441.768386	881.522219	0.61928	0.00027358	-1.6395	-0.00072428	-1.0202	-0.00045071	441.767731371388	103.03	1.3899	102.86	102.5	103.89	-0.17034					84	33	5	0	0	0	0.75282	1	12767	12767		42.474	0	1	21018000	+		2534	24337	1534	1537	3286	3286					0.07671857045613706
ALTDIVSQV	9	Unmodified	_ALTDIVSQV_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2656555175781	2	473.266207	944.517862	1.7408	0.00082386	-1.6092	-0.00076159	0.13157	6.2268E-05	473.2653361346061	73.889	0.76508	73.889	73.617	74.382	0					52	17	4	0	0	0	0.03666	1	9029	9029		136.27	11.674	1	6680100			2535	5168	1535	1538	3287	3287					0.04338347832049294
ALTDIVSQV	9	Unmodified	_ALTDIVSQV_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.266357421875	2	473.266207	944.517862	0.63819	0.00030203	-0.82522	-0.00039055	-0.18703	-8.8515E-05	473.2658234984516	74.196	1.4379	73.937	73.701	75.139	-0.25887					63	34	3	0	0	0	0.013065	4	9034	9024;9034;9046;9058		171.53	33.29	1	6660400			2536	5168	1535	1538	3288;3289;3290;3291	3289					0.04338347832049294
ALTDIVSQV	9	Unmodified	_ALTDIVSQV_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.26666259765625	2	473.266207	944.517862	-0.086786	-4.1073E-05	0.060103	2.8445E-05	-0.026683	-1.2628E-05	473.2660898370753	73.907	0.84009	73.917	73.64	74.481	0.0096512					52	19	5	0	0	0	0.020687	2	8970	8946;8970		148.99	17.62	1	6356300			2537	5168	1535	1538	3292;3293	3293					0.04338347832049294
ALTDIVSQV	9	Unmodified	_ALTDIVSQV_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.26629638671875	2	473.266207	944.517862	0.27369	0.00012953	-0.10396	-4.92E-05	0.16973	8.033E-05	473.2660306892627	74.285	0.81999	74.009	73.777	74.597	-0.27573					40	22	2	0	0	0	0.013065	2	8750	8730;8750		171.53	46.938	1	3560000			2538	5168	1535	1538	3294;3295	3295					0.04338347832049294
ALTDIVSQV	9	Unmodified	_ALTDIVSQV_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.26715087890625	2	473.266207	944.517862	0.27859	0.00013185	-0.099977	-4.7316E-05	0.17862	8.4533E-05	473.26596851013403	74.267	0.76213	74.004	73.727	74.489	-0.26326					49	19	3	0	0	0	0.067814	4	8760	8741;8748;8760;8772		122.18	16.421	1	2545100			2539	5168	1535	1538	3296;3297;3298;3299	3298					0.04338347832049294
ALTDIVSQV	9	Unmodified	_ALTDIVSQV_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2659606933594	2	473.266207	944.517862	0.20331	9.6219E-05	-0.089486	-4.2351E-05	0.11382	5.3868E-05	473.26605417257434	74.068	1.331	73.881	73.686	75.017	-0.18795					65	33	3	0	0	0	0.082191	2	8722	8715;8722		116.9	34.663	1	2364000			2540	5168	1535	1538	3300;3301	3301					0.04338347832049294
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3104248046875	2	486.310418	970.606283	0.077887	3.7877E-05	-0.20969	-0.00010197	-0.1318	-6.4097E-05	486.3102975117041	74.843	0.86904	74.843	74.509	75.378	0					75	21	5	0	0	0	0.027092	4	9161	9150;9161;9174;9187		143.89	35.799	1	9204100			2541	3714	1536	1539	3302;3303;3304;3305	3303					0.11980388142512766
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.310302734375	2	486.310418	970.606283	-0.099139	-4.8212E-05	-0.055697	-2.7086E-05	-0.15484	-7.5298E-05	486.3104082665105	75.062	1.0745	74.803	74.285	75.36	-0.25887					88	26	5	0	0	0	0.021872	6	9153	9144;9153;9165;9178;9190;9205		148.04	48.201	1	9465300			2542	3714	1536	1539	3306;3307;3308;3309;3310;3311	3307					0.11980388142512766
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.3104248046875	2	486.310418	970.606283	-0.61114	-0.0002972	0.38942	0.00018938	-0.22172	-0.00010783	486.31057296778727	74.877	0.82714	74.887	74.607	75.435	0.010376					70	20	4	0	0	0	0.014988	5	9090	9078;9090;9103;9116;9128		161.9	46.439	1	8708900			2543	3714	1536	1539	3312;3313;3314;3315;3316	3313					0.11980388142512766
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3106384277344	2	486.310418	970.606283	0.1072	5.2135E-05	0.31672	0.00015402	0.42392	0.00020616	486.31047267943796	75.059	1.14	74.784	74.479	75.619	-0.27573					63	27	4	0	0	0	0.082191	2	8848	8848;8860		116.9	26.127	1	2099400			2544	3714	1536	1539	3317;3318	3317					0.11980388142512766
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3107604980469	2	486.310418	970.606283	-0.073216	-3.5606E-05	0.66746	0.00032459	0.59425	0.00028899	486.3106788940986	75.005	0.90692	74.742	74.446	75.353	-0.26326					49	21	4	0	0	0	0.077175	2	8869	8857;8869		118.74	39.292	1	2136800			2545	3714	1536	1539	3319;3320	3320					0.11980388142512766
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.31109619140625	2	486.310418	970.606283	0.64326	0.00031282	0.41966	0.00020408	1.0629	0.00051691	486.3107901824795	74.843	0.99194	74.66	74.351	75.343	-0.18279					59	23	4	0	0	0	0.11092	3	8814	8814;8825;8836		108.09	30.492	1	1997000			2546	3714	1536	1539	3321;3322;3323	3321					0.11980388142512766
ALTERLKL	8	Unmodified	_ALTERLKL_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7774963378906	2	472.300384	942.586216	-0.12326	-5.8215E-05	1.7924	0.00084653	1.6691	0.00078831	472.3010331172776	29.198	0.75496	29.202	28.672	29.427	0.0031376					27	18	2	0	0	0	0.027866	1	1731	1731		60.972	2.19	1	310540			2547	3314	1537	1540	3324	3324					0.112626372025602
ALTEYTLYL	9	Unmodified	_ALTEYTLYL_					0	0	0		UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant;ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.789306640625	2	543.789515	1085.56448	0.44189	0.0002403	-0.61947	-0.00033686	-0.17758	-9.6565E-05	543.7890334610366	85.187	0.95743	85.187	84.709	85.667	0					61	22	4	0	0	0	0.013805	3	10685	10674;10685;10698		167.82	90.978	1	1566500			2548	3037	1538	1541	3325;3326;3327	3326					0.02511787663343057
ALTEYTLYL	9	Unmodified	_ALTEYTLYL_					0	0	0		UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant;ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.789306640625	2	543.789515	1085.56448	-1.0548	-0.00057359	0.73964	0.00040221	-0.31515	-0.00017138	543.7898593092114	85.144	0.74738	85.086	84.815	85.563	-0.05761					60	17	5	0	0	0	0.015769	3	10644	10633;10644;10656		157.99	95.882	1	1359100			2549	3037	1538	1541	3328;3329;3330	3329					0.02511787663343057
ALTEYTLYL	9	Unmodified	_ALTEYTLYL_					0	0	0		UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant;ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.7889404296875	2	543.789515	1085.56448	-1.2776	-0.00069477	1.0151	0.00055199	-0.26255	-0.00014277	543.7899195612626	85.112	0.86981	85.138	84.829	85.699	0.025536					60	20	4	0	0	0	0.014907	3	10591	10591;10603;10616		162.31	102.01	1	2119100			2550	3037	1538	1541	3331;3332;3333	3331					0.02511787663343057
ALTEYTLYL	9	Unmodified	_ALTEYTLYL_					0	0	0		UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant;ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.789515	1085.56448	0.10252	5.5747E-05	-0.18272	-9.9363E-05	-0.080208	-4.3616E-05	543.7893077140783	85.165	0.66322	84.97	84.681	85.345	-0.19508	-0.091206	-0.0004854	NaN	167.82	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165600			2551	3037	1538	1541							0.02511787663343057
ALTEYTLYL	9	Unmodified	_ALTEYTLYL_					0	0	0		UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant;ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.789515	1085.56448	0.57814	0.00031439	-0.6381	-0.00034699	-0.059951	-3.2601E-05	543.789019157942	85.111	0.53793	84.962	84.747	85.285	-0.14967	-0.099512	-0.00098065	NaN	167.82	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286680			2552	3037	1538	1541							0.02511787663343057
ALTEYTLYL	9	Unmodified	_ALTEYTLYL_					0	0	0		UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant;ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.789515	1085.56448	-0.10751	-5.8461E-05	0.15221	8.2771E-05	0.044706	2.4311E-05	543.7895558028865	85.162	0.57883	85.025	84.747	85.326	-0.13753	-0.036232	-0.00012113	NaN	167.82	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246970			2553	3037	1538	1541							0.02511787663343057
ALTFLWFR	8	Unmodified	_ALTFLWFR_					0	0	0		ENST00000547792.1_1_12:110781073-110782893:+|nuORF	ENST00000547792.1_1_12:110781073-110782893:+|nuORF	ENST00000547792.1_1_12:110781073-110782893:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3124389648438	2	527.297645	1052.58074	1.9219	0.0010134	1.1823	0.00062342	3.1041	0.0016368	527.298005337961	20.025	0.33985	20.091	19.875	20.215	0.066195					11	6	2	0	0	0	0.027866	1	451	451		19.36	0	1	20894			2554	16542	1539	1542	3334	3334					0.056549584107415285
ALTFVVLLS	9	Unmodified	_ALTFVVLLS_					0	0	0			REV__ENSG00000131080|ENST00000374719|EDA2R	REV__ENSG00000131080|ENST00000374719|EDA2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2626037597656	2	481.799686	961.584819	-0.60879	-0.00029332	-4.0813	-0.0019664	-4.6901	-0.0022597	481.79837159898716	35.781	0.4287	35.781	35.531	35.96	0					13	10	2	0	0	0	0.024466	1	2777	2777		33.516	18.651	1	50094	+		2555	23188	1540	1543	3335	3335					0.10249003113801791
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENST00000495713.5_1_9:75775181-75782501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.7562255859375	2	484.756007	967.497461	0.0078442	3.8025E-06	-0.20656	-0.00010013	-0.19872	-9.6329E-05	484.7557995730847	45.682	0.94189	45.585	44.945	45.887	-0.096649					48	26	3	0	0	0	0.15889	1	4356	4356		97.473	17.533	1	3771200			2556	4849	1541	1544	3336	3336					0.012411771722327103
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENST00000495713.5_1_9:75775181-75782501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.7560119628906	2	484.756007	967.497461	-0.18218	-8.8313E-05	-0.045373	-2.1995E-05	-0.22755	-0.00011031	484.7558790473399	45.877	1.1118	45.616	44.818	45.93	-0.26118					68	30	3	0	0	0	0.15889	3	4374	4363;4374;4386		97.473	5.3636	1	3765300			2557	4849	1541	1544	3337;3338;3339	3338					0.012411771722327103
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1	ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENST00000495713.5_1_9:75775181-75782501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.75665283203125	2	484.756007	967.497461	-0.50942	-0.00024695	0.20409	9.8934E-05	-0.30533	-0.00014801	484.75600855447715	45.782	0.89676	45.579	44.959	45.855	-0.20226					50	25	3	0	0	0	0.11848	2	4354	4354;4367		106.42	17.772	1	3523300			2558	4849	1541	1544	3340;3341	3340					0.012411771722327103
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7753601074219	2	494.776742	987.538931	0.73295	0.00036264	-1.1526	-0.0005703	-0.41969	-0.00020765	494.77624578358973	60.047	0.83714	60.047	59.745	60.582	0					57	22	4	0	0	0	0.016838	2	6884	6884;6895		152.63	70.393	1	5851300			2559	3673;14968	1542	1545	3342;3343	3342					0.0446635793156247
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7757568359375	2	494.776742	987.538931	-0.37469	-0.00018539	-0.11582	-5.7306E-05	-0.49051	-0.00024269	494.7767206267319	60.273	0.71123	60.073	59.795	60.506	-0.20037					53	18	4	0	0	0	0.06122	4	6899	6877;6889;6899;6913		124.59	53.299	1	4404900			2560	3673;14968	1542	1545	3344;3345;3346;3347	3346					0.0446635793156247
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7762145996094	2	494.776742	987.538931	-1.0417	-0.00051541	0.60959	0.00030161	-0.43211	-0.0002138	494.77711080704233	59.951	0.70987	60.03	59.791	60.501	0.078888					48	18	4	0	0	0	0.072054	3	6809	6783;6796;6809		120.62	49.325	1	5050700			2561	3673;14968	1542	1545	3348;3349;3350	3350					0.0446635793156247
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.776742	987.538931	-0.14156	-7.004E-05	2.9784	0.0014737	2.8369	0.0014036	494.7786858570332	60.278	0.51225	60.08	59.874	60.387	-0.19742	0.042137	0.0029325	NaN	152.63	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297410			2562	3673;14968	1542	1545							0.0446635793156247
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.776742	987.538931	-0.18627	-9.2164E-05	3.824	0.001892	3.6378	0.0017999	494.7798202283584	60.117	0.78125	59.941	59.777	60.559	-0.1761	-0.09707	0.0037692	NaN	152.63	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326230			2563	3673;14968	1542	1545							0.0446635793156247
ALTGYLHTI	9	Unmodified	_ALTGYLHTI_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.776742	987.538931	-0.45434	-0.00022479	3.4585	0.0017112	3.0042	0.0014864	494.7789446290081	60.311	0.55367	60.057	59.868	60.421	-0.25374	0.018971	0.0034075	NaN	152.63	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287400			2564	3673;14968	1542	1545							0.0446635793156247
ALTHRKIEAKT	11	Unmodified	_ALTHRKIEAKT_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.3746948242188	2	634.377686	1266.74082	-0.92735	-0.00058829	-0.67786	-0.00043002	-1.6052	-0.0010183	634.3771743485321	110.71	0.50396	110.59	110.51	111.02	-0.12524					33	17	2	0	0	0	1.013	1	13593	13593		33.922	1.1092	1	4299400			2565	18528;8481	1543	1546	3351	3351					0.11811841617122809
ALTILGVNN	9	Unmodified	_ALTILGVNN_					0	0	0			REV__ENST00000461434.1_1_1:151227258-151234901:+|nuORF	REV__ENST00000461434.1_1_1:151227258-151234901:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2955322265625	2	457.768917	913.523281	-0.55746	-0.00025519	0.26903	0.00012315	-0.28843	-0.00013203	457.7690995252017	55.627	0.37031	55.725	55.561	55.931	0.098015					16	9	2	0	0	0	0.023596	1	6113	6113		63.306	15.391	1	182890	+		2566	32876	1544	1547	3352	3352					0.06306071414530834
ALTKNLGL	8	Unmodified	_ALTKNLGL_					0	0	0			REV__nc|ENSG00000285467|P0CG22|DHRS4L1	REV__nc|ENSG00000285467|P0CG22|DHRS4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.26080322265625	2	415.260728	828.506903	-0.13111	-5.4445E-05	0.30338	0.00012598	0.17227	7.1537E-05	415.2608282568481	20.298	1.1181	20.298	20.028	21.146	0					55	22	4	0	0	0	0.56067	1	507	507		79.939	3.0926	1	2455200	+		2567	37217	1545	1548	3353	3353					0.08578990248417995
ALTLAAASLL	10	Unmodified	_ALTLAAASLL_					0	0	0			REV__ENSG00000183762|ENST00000400335|KREMEN1	REV__ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.29498291015625	2	472.294768	942.574983	0.66402	0.00031361	-0.25298	-0.00011948	0.41104	0.00019413	472.2944825818595	57.857	1.4293	57.857	57.641	59.07	0					77	38	4	0	0	0	0.50466	1	6555	6555		87.754	16.459	1	5654100	+		2568	27605	1546	1549	3354	3354					0.10139815108414041
ALTLHLFW	8	Unmodified	_ALTLHLFW_					0	0	0			REV__ENSG00000171860|ENST00000307637|C3AR1	REV__ENSG00000171860|ENST00000307637|C3AR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.821044921875	2	500.78437	999.554188	0.22841	0.00011438	-2.7689	-0.0013866	-2.5405	-0.0012722	500.78358953075775	67.583	0.38846	67.583	67.367	67.755	0					19	9	3	0	0	0	0.027866	1	8053	8053		31.579	4.7828	1	166090	+		2569	26609	1547	1550	3355	3355					0.05439269519422396
ALTLRKHM	8	Unmodified	_ALTLRKHM_					0	0	0		ZBTB11|p.R927L|1|0.19|ENSG00000066422|chr3:101651548-101651548|C/A|missense_variant	ZBTB11|p.R927L|1|0.19|ENSG00000066422|chr3:101651548-101651548|C/A|missense_variant	ZBTB11|p.R927L|1|0.19|ENSG00000066422|chr3:101651548-101651548|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.28839111328125	2	485.286754	968.558955	3.2593	0.0015817	-0.10838	-5.2597E-05	3.151	0.0015291	485.28684316422704	17.869	2.0137	17.869	17.449	19.463	0					85	40	5	0	0	0	1.0239	1	245	245		33.516	3.674	1	6870700			2570	38171	1548	1551	3356	3356					0.07341830390532778
ALTMLLPCL	9	Unmodified	_ALTMLLPCL_					0	0	0		ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.784912109375	2	487.774299	973.534046	-0.6606	-0.00032222	0.17812	8.6881E-05	-0.48248	-0.00023534	487.77439570957745	44.569	0.51143	44.606	44.34	44.851	0.0369					39	14	4	0	0	0	0.024386	1	4166	4166		18.324	0	1	1023100			2571	14459	1549	1552	3357	3357					0.04622014472920455
ALTPVDPAE	9	Unmodified	_ALTPVDPAE_					0	0	0		nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2586975097656	2	456.737283	911.460012	-0.87249	-0.0003985	1.0351	0.00047277	0.16262	7.4275E-05	456.73770268571826	60.569	1.2394	60.648	60.242	61.482	0.078888					58	32	3	0	0	0	0.024381	1	6982	6982		37.159	10.363	1	253860			2572	1884	1550	1553	3358	3358					0.0007408590661270864
ALTPVVVTL	9	Unmodified	_ALTPVVVTL_					0	0	0		nc|ENSG00000135446|P11802-2|CDK4;ENSG00000135446|ENST00000257904|CDK4	nc|ENSG00000135446|P11802-2|CDK4	nc|ENSG00000135446|P11802-2|CDK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2643737792969	2	456.791861	911.569169	0.018001	8.2227E-06	0.33825	0.00015451	0.35625	0.00016273	456.79177852752747	81.557	0.77317	81.557	81.258	82.031	0					41	18	4	0	0	0	0.024294	1	10155	10155		45.952	3.5558	1	1140900			2573	4895	1551	1554	3359	3359					0.10984716596760791
ALTQLTLYL	9	Unmodified	_ALTQLTLYL_					0	0	0		ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.30517578125	2	518.307875	1034.6012	-0.32742	-0.0001697	0.015055	7.8032E-06	-0.31236	-0.0001619	518.3078665748732	77.226	1.2853	77.015	76.502	77.787	-0.21087					52	30	3	0	0	0	0.50848	1	9510	9510		58.782	2.0609	1	1323600			2574	2519	1552	1555	3360	3360					0.08528084279896575
ALTQPLLL	8	Unmodified	_ALTQPLLL_					0	0	0		chr14:24218431-24235348|114|28.39|0.0|21.44|-|1|NEDD8-MDP1,None|1	chr14:24218431-24235348|114|28.39|0.0|21.44|-|1|NEDD8-MDP1,None|1	chr14:24218431-24235348|114|28.39|0.0|21.44|-|1|NEDD8-MDP1,None|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7796630859375	2	434.778754	867.542954	-0.21804	-9.48E-05	3.4579	0.0015034	3.2399	0.0014086	434.7801379909437	46.891	1.0545	46.95	46.623	47.677	0.059097					87	29	4	0	0	0	0.97794	1	4633	4633		40.778	0.20554	1	2944300			2575	340	1553	1556	3361	3361					0.10388447425293634
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2873840332031	2	450.287277	898.560001	-0.029794	-1.3416E-05	-0.56238	-0.00025323	-0.59217	-0.00026665	450.2870511902172	52.615	0.55392	52.615	52.273	52.827	0					30	13	3	0	0	0	0.20967	1	5643	5643		87.754	16.376	1	817970			2576	6185	1554	1557	3362	3362					0.10666368031070306
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.28662109375	2	450.287277	898.560001	0.15406	6.9373E-05	-1.1674	-0.00052566	-1.0133	-0.00045629	450.28645966370317	52.478	0.72577	52.57	52.363	53.088	0.091938					44	18	4	0	0	0	0.23085	2	5552	5552;5564		84.916	19.112	1	1309500			2577	6185	1554	1557	3363;3364	3363					0.10666368031070306
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.287277	898.560001	0.37175	0.00016739	-2.7193	-0.0012244	-2.3475	-0.0010571	450.2854817679543	52.729	0.94896	52.582	52.326	53.275	-0.14723	0.06053	-0.0020287	NaN	87.754	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735820			2578	6185	1554	1557							0.10666368031070306
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.287277	898.560001	-0.05938	-2.6738E-05	-3.4013	-0.0015316	-3.4607	-0.0015583	450.28532724467885	52.551	0.83154	52.424	52.195	53.027	-0.12706	-0.097307	-0.002643	NaN	87.754	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402210			2579	6185	1554	1557							0.10666368031070306
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	450.287277	898.560001	0.10636	4.7895E-05	-0.2059	-9.2716E-05	-0.099539	-4.4821E-05	450.28711833567047	52.72	0.39595	52.462	52.287	52.683	-0.25838	-0.058883	0.00023473	NaN	87.754	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344890			2580	6185	1554	1557							0.10666368031070306
ALTRALALA	9	Unmodified	_ALTRALALA_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.287277	898.560001	-0.10338	-4.6552E-05	0.064569	2.9075E-05	-0.038813	-1.7477E-05	450.287162188069	52.663	0.36346	52.473	52.267	52.631	-0.18982	-0.047678	0.00047831	NaN	87.754	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178590			2581	6185	1554	1557							0.10666368031070306
ALTRCAKPF	9	Unmodified	_ALTRCAKPF_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7801208496094	2	503.778762	1005.54297	-0.54807	-0.00027611	0.11746	5.9174E-05	-0.43061	-0.00021693	503.7786342981133	24.082	2.4579	24.082	23.321	25.779	0					127	57	3	0	0	0	0.70186	1	1035	1035		45.952	1.4209	1	878790	+		2582	34422	1555	1558	3365	3365					0.04042124153625082
ALTSKQVL	8	Unmodified	_ALTSKQVL_					0	0	0			REV__ENSG00000100813|ENST00000605057|ACIN1	REV__ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	430.26605224609375	2	430.26601	858.517468	0.51679	0.00022236	-0.33344	-0.00014347	0.18335	7.8888E-05	430.26576254250017	20.784	0.87308	20.616	20.345	21.219	-0.16774					46	17	4	0	0	0	0.34196	1	606	606		105.27	2.4954	1	1239400	+		2583	21153	1556	1559	3366	3366					0.08254972902852842
ALTSKQVL	8	Unmodified	_ALTSKQVL_					0	0	0			REV__ENSG00000100813|ENST00000605057|ACIN1	REV__ENSG00000100813|ENST00000605057|ACIN1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	430.26601	858.517468	-0.36833	-0.00015848	0.85209	0.00036662	0.48376	0.00020815	430.26624142816445	20.911	0.79084	20.698	20.425	21.216	-0.2128	0.075373	0.00072223	NaN	105.27	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449430	+		2584	21153	1556	1559							0.08254972902852842
ALTSTLISV	9	Unmodified	_ALTSTLISV_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;ENST00000470994.1_1_7:23309673-23313234:+|nuORF	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.77099609375	2	452.771126	903.527698	0.16515	7.4774E-05	0.082543	3.7373E-05	0.24769	0.00011215	452.7710286288502	73.89	1.1912	73.613	73.365	74.557	-0.2769					48	32	3	0	0	0	0.016838	3	8710	8685;8697;8710		152.63	58.627	1	2431700			2585	38151	1557	1560	3367;3368;3369	3369					0.07207535837437717
ALTSTLISV	9	Unmodified	_ALTSTLISV_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;ENST00000470994.1_1_7:23309673-23313234:+|nuORF	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.7711181640625	2	452.771126	903.527698	-0.11264	-5.0999E-05	0.292	0.00013221	0.17936	8.121E-05	452.77113906713623	73.893	0.67104	73.628	73.294	73.965	-0.26479					42	18	4	0	0	0	0.016838	4	8705	8697;8705;8717;8729		152.63	55.161	1	3346100			2586	38151	1557	1560	3370;3371;3372;3373	3371					0.07207535837437717
ALTSTLISV	9	Unmodified	_ALTSTLISV_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB;ENST00000470994.1_1_7:23309673-23313234:+|nuORF	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.7709045410156	2	452.771126	903.527698	0.028546	1.2925E-05	-0.11639	-5.2697E-05	-0.087842	-3.9772E-05	452.770946877923	73.761	0.58267	73.571	73.237	73.82	-0.19026					33	15	3	0	0	0	0.034181	3	8664	8664;8674;8686		138.24	44.236	1	3412400			2587	38151	1557	1560	3374;3375;3376	3374					0.07207535837437717
ALTVAAWHL	9	Unmodified	_ALTVAAWHL_					0	0	0			REV__ENSG00000123473|ENST00000371877|STIL	REV__ENSG00000123473|ENST00000371877|STIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.81280517578125	2	491.279452	980.544351	-0.081097	-3.9841E-05	-3.3497	-0.0016456	-3.4308	-0.0016855	491.27903248436115	101.76	0.30834	101.76	101.68	101.99	0					10	6	2	0	0	0	0.024466	1	13063	13063		42.474	26.001	1	68239	+		2588	22700	1558	1561	3377	3377					0.05330081514023277
ALTVLLSHS	9	Unmodified	_ALTVLLSHS_					0	0	0			REV__CON__P01966	REV__CON__P01966	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2213439941406	2	470.776742	939.538931	-0.6947	-0.00032705	1.6971	0.00079893	1.0024	0.00047189	470.7768152675194	68.752	0.81979	68.49	68.181	69.001	-0.26165					28	19	2	0	0	0	0.024294	1	7943	7943		45.952	19.156	1	228140	+	+	2589	19536	1559	1562	3378	3378					0.0667435793156983
ALTVLLSHS	9	Unmodified	_ALTVLLSHS_					0	0	0			REV__CON__P01966	REV__CON__P01966	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.776742	939.538931	0.28195	0.00013273	0.073701	3.4697E-05	0.35565	0.00016743	470.77654508500945	68.442	0.77042	68.442	67.947	68.717	0	-0.041073	7.1536E-05	NaN	45.952	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506290	+	+	2590	19536	1559	1562							0.0667435793156983
ALTVLLSHS	9	Unmodified	_ALTVLLSHS_					0	0	0			REV__CON__P01966	REV__CON__P01966	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	470.776742	939.538931	0.52924	0.00024916	-0.046909	-2.2084E-05	0.48234	0.00022707	470.77647590088947	68.791	0.85639	68.498	67.896	68.753	-0.29267	0.015736	-4.2024E-05	NaN	45.952	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630880	+	+	2591	19536	1559	1562							0.0667435793156983
ALTVPPIN	8	Unmodified	_ALTVPPIN_					0	0	0			REV__ENSG00000144468|ENST00000392062|RHBDD1	REV__ENSG00000144468|ENST00000392062|RHBDD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.151123046875	2	412.747453	823.480354	0.20844	8.6034E-05	-3.3634	-0.0013882	-3.1549	-0.0013022	412.7460620019513	81.74	1.06	81.546	81.171	82.231	-0.19334					63	24	4	0	0	0	0.027866	1	9820	9820		17.365	0	1	334130	+		2592	24337	1560	1563	3379	3379					0.06155301357080134
ALTVSVKK	8	Unmodified	_ALTVSVKK_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.27484130859375	2	423.276378	844.538203	0.26201	0.0001109	-3.622	-0.0015331	-3.36	-0.0014222	423.2746738288438	110.24	0.60139	110.24	110.02	110.62	0.0059204					41	17	3	0	0	0	1.0574	1	13896	13896		9.4706	0	1	261390	+		2593	22942	1561	1564	3380	3380					0.10971563282521402
ALVAAAIGLL	10	Unmodified	_ALVAAAIGLL_					0	0	0			REV__ENSG00000188051|ENST00000341130|TMEM221	REV__ENSG00000188051|ENST00000341130|TMEM221	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7666015625	2	456.299853	910.585153	-0.96047	-0.00043826	3.6092	0.0016469	2.6487	0.0012086	456.30137342282995	44.157	1.3097	44.012	43.425	44.734	-0.14471					61	37	2	0	0	0	0.03519	1	4167	4167		35.201	0	1	936100	+		2594	28004	1562	1565	3381	3381					0.1262842283365444
ALVAGCHAE	9	Unmodified	_ALVAGCHAE_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2585144042969	2	435.710545	869.406537	0.23528	0.00010251	0.098131	4.2757E-05	0.33341	0.00014527	435.710478215972	26.167	3.836	26.249	24.413	28.249	0.081293					177	93	4	0	0	0	0.024325	1	1020	1020		31.955	5.1588	1	738500	+		2595	36468	1563	1566	3382	3382					-0.03338990076883874
ALVAGIVAGAI	11	Unmodified	_ALVAGIVAGAI_					0	0	0			REV__nc|ENSG00000135218|P16671-2|CD36	REV__nc|ENSG00000135218|P16671-2|CD36	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8028259277344	2	477.80276	953.590967	-0.06748	-3.2242E-05	0.15013	7.1733E-05	0.08265	3.949E-05	477.8026391352436	52.339	0.74773	52.431	52.04	52.788	0.091938					52	18	4	0	0	0	0.98311	1	5515	5515		40.573	8.6178	1	1812000	+		2596	23520	1564	1567	3383	3383					0.11231521345325746
ALVAGSSAAAP	11	Unmodified	_ALVAGSSAAAP_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.24822998046875	2	457.750724	913.486896	-0.62862	-0.00028775	-2.3875	-0.0010929	-3.0161	-0.0013806	457.7510047365146	30.175	1.1217	30.249	29.838	30.96	0.074316					74	26	4	0	0	0	0.9749	1	1882	1882		42.396	1.618	1	3016100			2597	867	1565	1568	3384	3384					0.026691945177958587
ALVALCLLPA	10	Unmodified	_ALVALCLLPA_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MSMS	OPSCC_39_ClassI_Rep-3	3	492.29754638671875	2	492.301539	982.588524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.354	1	62.417	61.917	62.917	0.062767								0	0	0	0.73915	1	7173	7173		35.201	0	1				2598	9809	1566	1569	3385	3385					0.09653349616007745
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.7608642578125	2	413.760895	825.507237	0.50956	0.00021083	-0.85787	-0.00035495	-0.34832	-0.00014412	413.7603779218904	45.443	1.0112	45.443	45.079	46.09	0					67	29	4	0	0	0	0.56067	1	4415	4415		79.939	3.1651	1	3663300	+		2599	21611	1567	1570	3386	3386					0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.7611389160156	2	413.760895	825.507237	-0.076645	-3.1713E-05	-0.20301	-8.3996E-05	-0.27965	-0.00011571	413.7606839575035	45.546	0.94698	45.395	45.007	45.954	-0.15142					52	27	3	0	0	0	0.56067	1	4413	4413		79.939	5.6842	1	4288300	+		2600	21611	1567	1570	3387	3387					0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.7616882324219	2	413.760895	825.507237	-0.04555	-1.8847E-05	0.0070397	2.9128E-06	-0.03851	-1.5934E-05	413.760737164298	45.409	0.74395	45.453	45.214	45.958	0.04388					49	21	3	0	0	0	0.56067	2	4345	4345;4356		79.939	5.6842	1	4154800	+		2601	21611	1567	1570	3388;3389	3388					0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	413.760895	825.507237	0.50956	0.00021083	-0.85787	-0.00035495	-0.34832	-0.00014412	413.7603779218904	45.443	1.0112	45.443	45.079	46.09	0	0.02479	-0.00079518	NaN	79.939	67	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3663300	+		2602	21611	1567	1570							0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	413.760895	825.507237	-0.04555	-1.8847E-05	0.0070397	2.9128E-06	-0.03851	-1.5934E-05	413.760737164298	45.409	0.74395	45.453	45.214	45.958	0.04388	0.035186	-7.9448E-05	NaN	79.939	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4154800	+		2603	21611	1567	1570							0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.760895	825.507237	-0.24606	-0.00010181	0.62099	0.00025694	0.37494	0.00015513	413.7610134429778	45.519	0.5116	45.42	45.154	45.666	-0.099445	0.0018682	0.00042861	NaN	79.939	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492250	+		2604	21611	1567	1570							0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	413.760895	825.507237	-0.1557	-6.4422E-05	0.47883	0.00019812	0.32313	0.0001337	413.76097843625536	45.654	0.48106	45.402	45.157	45.638	-0.25252	-0.016067	0.00031097	NaN	79.939	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485220	+		2605	21611	1567	1570							0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	413.760895	825.507237	-0.39904	-0.00016511	0.85906	0.00035544	0.46002	0.00019034	413.76108480189276	45.597	0.57653	45.395	45.13	45.706	-0.20226	-0.0227	0.00062562	NaN	79.939	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475090	+		2606	21611	1567	1570							0.08750409968274653
ALVAQIRVN	9	Unmodified	_ALVAQIRVN_					0	0	0			REV__NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	REV__NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.3059387207031	2	492.303458	982.592364	0.69981	0.00034452	-3.3918	-0.0016698	-2.6919	-0.0013253	492.3008373331951	58.67	1.3907	58.67	58.091	59.482	0					90	37	5	0	0	0	0.024354	1	6777	6777		30.504	0	1	2926600	+		2607	21817	1568	1571	3390	3390					0.10037155434088163
ALVATLPGVTT	11	Unmodified	_ALVATLPGVTT_					0	0	0		ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8125610351562	2	521.810782	1041.60701	-0.20542	-0.00010719	3.996	0.0020852	3.7906	0.001978	521.8128611872344	41.5	0.74377	41.377	40.943	41.687	-0.12318					72	20	4	0	0	0	1.018	1	3740	3740		32.812	0.85756	1	15953000			2608	14837	1569	1572	3391	3391					0.0878718279154782
ALVATLPGVTT	11	Unmodified	_ALVATLPGVTT_					0	0	0		ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8126220703125	2	521.810782	1041.60701	-0.21676	-0.00011311	4.2662	0.0022262	4.0494	0.002113	521.8130103174198	42.098	1.6966	42.124	41.821	43.517	0.026016					122	47	3	0	0	0	1.0238	1	3775	3775		31.53	1.2121	1	8235700			2609	14837	1569	1572	3392	3392					0.0878718279154782
ALVCVLLVGR	10	Unmodified	_ALVCVLLVGR_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7537841796875	2	521.825712	1041.63687	2.9567	0.0015429	-0.68631	-0.00035814	2.2704	0.0011847	521.8253517248393	17.127	0.21228	17.127	16.989	17.201	0					6	4	2	0	0	0	0.03519	1	122	122		17.365	0	1	14307			2610	4530	1570	1573	3393	3393					0.11771843255905878
ALVDEIPL	8	Unmodified	_ALVDEIPL_					0	0	0			REV__nc|ENSG00000179456|Q99592|ZBTB18	REV__nc|ENSG00000179456|Q99592|ZBTB18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.25146484375	2	435.252569	868.490584	-0.055368	-2.4099E-05	-2.7642	-0.0012031	-2.8195	-0.0012272	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	1.0239	1	9936	9936		33.516	4.366	1	1610700	+		2611	27269	1571	1574	3394	3394					0.05107864291676378
ALVDEIPL	8	Unmodified	_ALVDEIPL_					0	0	0			REV__nc|ENSG00000179456|Q99592|ZBTB18	REV__nc|ENSG00000179456|Q99592|ZBTB18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	435.252569	868.490584	0.76514	0.00033303	3.0995	0.0013491	3.8646	0.0016821	435.2531935241579	43.029	0.87785	43.06	42.498	43.376	0.030823					40	23	3	0	0	0	0.027866	1	3864	3864		35.201	14.719	1	483770	+		2612	27269	1571	1574	3395	3395					0.05107864291676378
ALVDQLWKL	9	Unmodified	_ALVDQLWKL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3233032226562	2	543.321317	1084.62808	-0.903	-0.00049062	0.20782	0.00011291	-0.69518	-0.00037771	543.3214676172626	81.747	0.98114	81.747	81.382	82.363	0					41	23	2	0	0	0	0.15366	1	10199	10199		98.629	10.933	1	1538000			2613	1272	1572	1575	3396	3396					0.08915192891072365
ALVDQLWKL	9	Unmodified	_ALVDQLWKL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3233032226562	2	543.321317	1084.62808	-0.63761	-0.00034643	-0.035507	-1.9292E-05	-0.67312	-0.00036572	543.3213354376227	81.852	0.89365	81.721	81.38	82.273	-0.13075					37	21	4	0	0	0	0.26966	1	10176	10176		79.713	2.9384	1	1495500			2614	1272	1572	1575	3397	3397					0.08915192891072365
ALVDQLWKL	9	Unmodified	_ALVDQLWKL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.321317	1084.62808	-1.2376	-0.00067243	0.56141	0.00030503	-0.67622	-0.0003674	543.3216320927874	81.675	0.77591	81.7	81.413	82.189	0.025711	0.092647	0.00040178	NaN	98.629	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1318900			2615	1272	1572	1575							0.08915192891072365
ALVDQLWKL	9	Unmodified	_ALVDQLWKL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.321317	1084.62808	0.029073	1.5796E-05	-0.093312	-5.0698E-05	-0.064239	-3.4903E-05	543.3209671900306	81.686	0.58973	81.458	81.229	81.819	-0.2289	-0.15031	-0.00030967	NaN	98.629	27	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414350			2616	1272	1572	1575							0.08915192891072365
ALVDQLWKL	9	Unmodified	_ALVDQLWKL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.321317	1084.62808	-0.023064	-1.2531E-05	-0.5032	-0.0002734	-0.52626	-0.00028593	543.3209817062735	81.681	0.63198	81.488	81.254	81.886	-0.19334	-0.12016	-0.00075507	NaN	98.629	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328810			2617	1272	1572	1575							0.08915192891072365
ALVDQLWKL	9	Unmodified	_ALVDQLWKL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.321317	1084.62808	-1.241	-0.00067429	0.77967	0.00042361	-0.46138	-0.00025068	543.3216829749423	81.676	0.50776	81.533	81.275	81.782	-0.14248	-0.074609	0.00063895	NaN	98.629	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318730			2618	1272	1572	1575							0.08915192891072365
ALVEPHKR	8	Unmodified	_ALVEPHKR_					0	0	0			REV__nc|ENSG00000141956|P57071|PRDM15	REV__nc|ENSG00000141956|P57071|PRDM15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.26043701171875	2	475.282526	948.550499	0.057538	2.7347E-05	-3.0559	-0.0014524	-2.9983	-0.0014251	475.28090104060095	43.592	0.46901	43.592	43.296	43.765	0					21	12	3	0	0	0	0.027866	1	4118	4118		40.573	20.576	1	294660	+		2619	36727	1573	1576	3398	3398					0.07416599745567964
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7869873046875	2	472.786776	943.558998	-0.048817	-2.308E-05	-3.3009	-0.0015606	-3.3498	-0.0015837	472.78680744145635	83.513	1.1635	83.513	83.008	84.171	0					63	26	4	0	0	0	0.018478	3	10448	10448;10461;10476		211.23	68.213	1	3630700			2620	9841	1574	1577	3399;3400;3401	3399					0.0849610887153176
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.786865234375	2	472.786776	943.558998	0.29707	0.00014045	-3.6458	-0.0017237	-3.3487	-0.0015832	472.7866478462673	83.539	1.6973	83.448	83.043	84.741	-0.090454					83	39	5	0	0	0	0.015527	3	10431	10419;10431;10444		193.98	41.345	1	3320500			2621	9841	1574	1577	3402;3403;3404	3403					0.0849610887153176
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7871398925781	2	472.786776	943.558998	-0.38248	-0.00018083	-2.7913	-0.0013197	-3.1738	-0.0015005	472.78690900922584	83.417	1.0734	83.444	83.046	84.119	0.026558					65	24	5	0	0	0	0.015527	4	10372	10348;10360;10372;10385		211.23	68.213	1	3252700			2622	9841	1574	1577	3405;3406;3407;3408	3407					0.0849610887153176
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.7868957519531	2	472.786776	943.558998	0.87366	0.00041306	-0.18571	-8.7802E-05	0.68795	0.00032525	472.7863338932956	83.585	1.1537	83.373	83.049	84.202	-0.21159					56	26	4	0	0	0	0.016838	2	10082	10082;10095		152.63	37.174	1	1961500			2623	9841	1574	1577	3409;3410	3409					0.0849610887153176
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.7867126464844	2	472.786776	943.558998	0.62509	0.00029553	0.0058408	2.7614E-06	0.63093	0.00029829	472.78639731613976	83.527	1.3201	83.358	83.033	84.353	-0.16915					60	30	4	0	0	0	0.034181	2	10103	10091;10103		138.24	55.937	1	1391900			2624	9841	1574	1577	3411;3412	3412					0.0849610887153176
ALVESLITV	9	Unmodified	_ALVESLITV_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.7868957519531	2	472.786776	943.558998	0.0066512	3.1446E-06	0.6551	0.00030972	0.66175	0.00031287	472.78671900748265	83.513	1.2846	83.374	83.037	84.322	-0.1386					54	29	4	0	0	0	0.06122	2	10089	10077;10089		124.59	30.588	1	1332600			2625	9841	1574	1577	3413;3414	3414					0.0849610887153176
ALVEVIAMI	9	Oxidation (M)	_ALVEVIAM(Oxidation (M))I_		ALVEVIAM(1)I		ALVEVIAM(56)I	0	0	1		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.78387451171875	2	487.783179	973.551804	-0.9594	-0.00046798	2.2105	0.0010783	1.2511	0.00061028	487.7841613607698	85.117	0.62353	85.143	84.912	85.536	0.025528					41	14	4	0	0	0	0.55828	1	10604	10604		55.504	14.932	1	701100			2626	11022	1575	1578	3415	3415		458			0.063970529994549
ALVEVIAMI	9	Oxidation (M)	_ALVEVIAM(Oxidation (M))I_					0	0	1		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.783179	973.551804	0.92286	0.00045016	0.69296	0.00033802	1.6158	0.00078817	487.7833729227117	85.187	0.62651	85.187	84.999	85.626	0	0.017476	-0.00093541	NaN	55.504	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843630			2627	11022	1575	1578				458			0.063970529994549
ALVFEGPAE	9	Unmodified	_ALVFEGPAE_					0	0	0		ENSG00000171161|ENST00000306562|ZNF672	ENSG00000171161|ENST00000306562|ZNF672	ENSG00000171161|ENST00000306562|ZNF672	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.2624816894531	2	466.739825	931.465098	0.7391	0.00034497	4.2796	0.0019975	5.0187	0.0023424	466.74265576517985	51.006	0.18754	50.895	50.786	50.973	-0.11163					6	4	2	0	0	0	0.024517	1	5216	5216		26.796	0	1	87276			2628	8120	1576	1579	3416	3416					-0.0033761023075840058
ALVFLAGIL	9	Unmodified	_ALVFLAGIL_					0	0	0		ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENST00000585265.1_1_17:30807457-30807646:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.26849365234375	2	458.796946	915.57934	0.079508	3.6478E-05	0.25221	0.00011571	0.33171	0.00015219	458.79687074156146	75.345	0.50124	75.072	74.766	75.267	-0.27267					21	11	3	0	0	0	0.024289	1	8900	8900		49.211	19.369	1	117830			2629	17224	1577	1580	3417	3417					0.11817324322009881
ALVGLLDELN	10	Unmodified	_ALVGLLDELN_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.31396484375	2	528.800414	1055.58628	0.88927	0.00047025	3.8994	0.002062	4.7887	0.0025323	528.801705930965	97.414	0.62337	97.414	97.058	97.682	-3.8147E-05					16	13	2	0	0	0	0.03519	1	12373	12373		47.916	3.7988	1	24382	+		2630	23826	1578	1581	3418	3418					0.06070592411901998
ALVGPVGLEH	10	Unmodified	_ALVGPVGLEH_					0	0	0		ENST00000381638.6_1_17:3908682-3909213:-|nuORF	ENST00000381638.6_1_17:3908682-3909213:-|nuORF	ENST00000381638.6_1_17:3908682-3909213:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.28375244140625	2	496.282192	990.549831	-0.27352	-0.00013574	3.2166	0.0015963	2.9431	0.0014606	496.2834289236693	20.505	1.2301	20.281	19.779	21.009	-0.22344					47	24	4	0	0	0	1.1166	1	534	534		30.504	2.6214	1	188980			2631	13347	1579	1582	3419	3419					0.05417760305851971
ALVGSTACVS	10	Unmodified	_ALVGSTACVS_					0	0	0			REV__ENSG00000161849|ENST00000257951|KRT84	REV__ENSG00000161849|ENST00000257951|KRT84	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.7483825683594	2	454.23131	906.448068	-0.29942	-0.00013601	1.3394	0.00060838	1.0399	0.00047237	454.23263603247335	43.114	0.34501	42.877	42.679	43.024	-0.23737					10	8	2	0	0	0	0.03519	1	3913	3913		27.882	5.9224	1	35052	+	+	2632	19596	1580	1583	3420	3420					-0.00889854108208965
ALVHDRGQSN	10	Unmodified	_ALVHDRGQSN_					0	0	0			REV__DAAM1|p.A196D|1|0.2|ENSG00000100592|chr14:59323038-59323038|C/A|missense_variant	REV__DAAM1|p.A196D|1|0.2|ENSG00000100592|chr14:59323038-59323038|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8031005859375	2	548.778336	1095.54212	-1.1853	-0.00065046	2.6208	0.0014382	1.4355	0.00078778	548.7796443870855	45.737	0.7861	45.586	45.276	46.062	-0.15156					34	17	3	0	0	0	0.03519	1	4403	4403		18.262	0	1	415100	+		2633	19647	1581	1584	3421	3421					-0.0018299896171356522
ALVHENSKN	9	Unmodified	_ALVHENSKN_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.2652893066406	2	506.26453	1010.51451	-0.9592	-0.00048561	3.0393	0.0015387	2.08	0.0010531	506.26651750700626	62.875	1.3015	62.636	62.264	63.566	-0.23926					106	35	5	0	0	0	0.88411	1	7297	7297		33.516	0	1	4047000	+		2634	25109	1582	1585	3422	3422					0.009670977780501744
ALVKKSAL	8	Unmodified	_ALVKKSAL_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;ELP5|p.P103Rfs*5|1|0.13|ENSG00000170291|chr17:7254647-7254647|G/-|frameshift_variant;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.24835205078125	2	415.278921	828.543289	-0.36082	-0.00014984	2.1382	0.00088793	1.7773	0.00073809	415.28008459199	35.758	0.20301	35.802	35.658	35.861	0.04406					7	4	2	0	0	0	0.027866	1	2716	2716		19.36	7.1531	1	30511			2635	18504	1583	1586	3423	3423					0.12215867145141601
ALVKKSAL	8	Unmodified	_ALVKKSAL_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;ELP5|p.P103Rfs*5|1|0.13|ENSG00000170291|chr17:7254647-7254647|G/-|frameshift_variant;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	415.278921	828.543289	-0.69791	-0.00028983	0.71502	0.00029693	0.017118	7.1087E-06	415.27905777977134	35.796	0.30511	35.591	35.346	35.651	-0.20518	-0.0050091	0.00019234	NaN	12.959	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103810			2636	18504	1583	1586							0.12215867145141601
ALVKKSAL	8	Unmodified	_ALVKKSAL_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;ELP5|p.P103Rfs*5|1|0.13|ENSG00000170291|chr17:7254647-7254647|G/-|frameshift_variant;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	415.278921	828.543289	-0.32564	-0.00013523	0.079066	3.2834E-05	-0.24657	-0.0001024	415.2789887526398	35.719	0.26334	35.507	35.354	35.618	-0.21246	-0.089571	-0.00033586	NaN	12.959	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120290			2637	18504	1583	1586							0.12215867145141601
ALVKKSAL	8	Unmodified	_ALVKKSAL_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5;ELP5|p.P103Rfs*5|1|0.13|ENSG00000170291|chr17:7254647-7254647|G/-|frameshift_variant;nc|ENSG00000170291|Q8TE02-2|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	415.278921	828.543289	0.034899	1.4493E-05	0.16059	6.6688E-05	0.19548	8.1181E-05	415.278746809204	35.68	0.3205	35.485	35.292	35.613	-0.19429	-0.11101	-0.00026816	NaN	12.959	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134910			2638	18504	1583	1586							0.12215867145141601
ALVKRIVR	8	Unmodified	_ALVKRIVR_					0	0	0			REV__ENSG00000240771|ENST00000286494|ARHGEF25	REV__ENSG00000240771|ENST00000286494|ARHGEF25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.83233642578125	2	477.832186	953.649819	0.19865	9.4921E-05	2.9618	0.0014152	3.1604	0.0015101	477.833467546802	105.85	1.2379	105.85	105.54	106.78	0.00014496					116	43	4	0	0	0	1.0574	1	13557	13557		20.482	1.1219	1	2681800	+		2639	28963	1584	1587	3424	3424					0.17114042430318932
ALVLFASRHG	10	Unmodified	_ALVLFASRHG_					0	0	0			REV__ENSG00000163354|ENST00000368424|DCST2	REV__ENSG00000163354|ENST00000368424|DCST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2718505859375	2	535.808908	1069.60326	-0.45327	-0.00024287	4.1286	0.0022121	3.6753	0.0019693	535.810215179504	103.93	0.50916	103.93	103.73	104.23	0.0031357					17	12	2	0	0	0	0.03519	1	13331	13331		10.265	3.0719	1	64478	+		2640	25556	1585	1588	3425	3425					0.07124557808378995
ALVLGQSADP	10	Unmodified	_ALVLGQSADP_					0	0	0			REV__ENSG00000171735|ENST00000303635|CAMTA1	REV__ENSG00000171735|ENST00000303635|CAMTA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3130187988281	2	485.763832	969.513111	0.01194	5.8002E-06	-0.12139	-5.8965E-05	-0.10945	-5.3165E-05	485.76363160485846	40.308	0.49151	40.308	40.024	40.516	0					26	13	3	0	0	0	0.03519	1	3499	3499		45.952	0	1	734430	+		2641	26596	1586	1589	3426	3426					0.027134636892810704
ALVLLATPV	9	Unmodified	_ALVLLATPV_					0	0	0			REV__ENSG00000133800|ENST00000256178|LYVE1	REV__ENSG00000133800|ENST00000256178|LYVE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.9393005371094	2	448.794404	895.574254	0.23082	0.00010359	2.2494	0.0010095	2.4802	0.0011131	448.7956108309497	46.38	0.21622	46.284	46.187	46.403	-0.096649					8	5	2	0	0	0	0.024443	1	4459	4459		19.36	1.0356	1	60716	+		2642	23396	1587	1590	3427	3427					0.1222902045938099
ALVLLRDN	8	Unmodified	_ALVLLRDN_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.263916015625	2	457.276909	912.539266	0.0958	4.3807E-05	-1.2424	-0.0005681	-1.1466	-0.0005243	457.2755875930657	82.477	0.68532	82.296	81.689	82.374	-0.18079					22	15	3	0	0	0	0.027866	1	9885	9885		27.882	0	1	29486			2643	1815	1588	1591	3428	3428					0.07949777651424483
ALVNGERDL	9	Unmodified	_ALVNGERDL_					0	0	0		ENST00000529460.1_1_11:118272380-118277657:+|nuORF	ENST00000529460.1_1_11:118272380-118277657:+|nuORF	ENST00000529460.1_1_11:118272380-118277657:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2828063964844	2	493.766906	985.519259	-0.84982	-0.00041961	1.3081	0.00064589	0.45827	0.00022628	493.7675709560402	39.738	0.67429	39.762	39.526	40.2	0.023727					27	18	2	0	0	0	0.024436	1	3434	3434		23.042	0	1	175500			2644	16209	1589	1592	3429	3429					0.025919819208070294
ALVNGERDL	9	Unmodified	_ALVNGERDL_					0	0	0		ENST00000529460.1_1_11:118272380-118277657:+|nuORF	ENST00000529460.1_1_11:118272380-118277657:+|nuORF	ENST00000529460.1_1_11:118272380-118277657:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.766906	985.519259	-0.9999	-0.00049372	1.3725	0.00067768	0.37258	0.00018397	493.76751411526277	39.663	0.53953	39.551	39.291	39.83	-0.11223	-0.10539	3.8642E-05	NaN	35.618	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181970			2645	16209	1589	1592							0.025919819208070294
ALVPPQHYYDA	11	Unmodified	_ALVPPQHYYDA_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.2384033203125	3	425.211906	1272.61389	-0.56841	-0.00024169	-3.485	-0.0014819	-4.0534	-0.0017235	425.2102600459584	29.536	0.85649	29.291	28.838	29.695	-0.24524					38	19	3	0	0	0	0.024731	1	1844	1844		24.232	3.3947	1	319670			2646	18650	1590	1593	3430	3430					-0.011515043278450321
ALVQAKEVTRY	11	Unmodified	_ALVQAKEVTRY_					0	0	0		nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.F718Lfs*17|1|0.1|ENSG00000116106|chr2:221436591-221436591|A/-|frameshift_variant;EPHA4|p.M674Ifs*5|1|0.12|ENSG00000116106|chr2:221442881-221442882|-/A|frameshift_variant	nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.57928466796875	3	426.578588	1276.71394	1.0112	0.00043135	0.004722	2.0143E-06	1.0159	0.00043337	426.57854737301795	36.013	1.7982	35.815	35.366	37.164	-0.19829					129	47	4	0	0	0	1.0238	1	2814	2814		27.644	0	1	4843000			2647	3518	1591	1594	3431	3431					0.08664733005957714
ALVQDLAKA	9	Unmodified	_ALVQDLAKA_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7762451171875	2	464.776742	927.538931	0.03693	1.7164E-05	0.22137	0.00010289	0.25829	0.00012005	464.7765972172615	49.62	0.82789	49.34	49.086	49.914	-0.27977					43	21	3	0	0	0	0.079716	1	4981	4981		117.81	38.098	1	1486700			2648	4748	1592	1595	3432	3432					0.07226357931551775
ALVQDLAKA	9	Unmodified	_ALVQDLAKA_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.776742	927.538931	-0.14984	-6.9644E-05	0.3297	0.00015324	0.17985	8.3592E-05	464.77663642650595	49.35	0.61019	49.25	49.029	49.64	-0.1008	-0.04217	0.00010706	NaN	117.81	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1570900			2649	4748	1592	1595							0.07226357931551775
ALVQDLAKA	9	Unmodified	_ALVQDLAKA_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.776742	927.538931	0.047409	2.2034E-05	0.14076	6.542E-05	0.18816	8.7454E-05	464.7765917182499	49.466	0.64267	49.286	49.002	49.644	-0.18071	-0.0060471	-6.8575E-05	NaN	117.81	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1597200			2650	4748	1592	1595							0.07226357931551775
ALVQWKPP	8	Unmodified	_ALVQWKPP_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.78155517578125	2	469.776545	937.538538	-0.67026	-0.00031487	0.12079	5.6745E-05	-0.54947	-0.00025813	469.77446644158243	43.882	1.1819	43.882	43.44	44.622	0					93	33	5	0	0	0	0.95417	1	4160	4160		44.531	2.1349	1	7099900			2651	1112;18045	1593	1596	3433	3433					0.06726983002374709
ALVRAYVI	8	Unmodified	_ALVRAYVI_					0	0	0			REV__ENSG00000151468|ENST00000378825|CCDC3	REV__ENSG00000151468|ENST00000378825|CCDC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2428283691406	2	452.78437	903.554188	-0.38658	-0.00017504	0.57685	0.00026119	0.19026	8.6148E-05	452.78453797831025	59.765	0.363	59.85	59.655	60.018	0.085682					16	9	2	0	0	0	0.027866	1	6738	6738		21.702	0	1	153030	+		2652	24772	1594	1597	3434	3434					0.09855269519414378
ALVRPEASV	9	Unmodified	_ALVRPEASV_					0	0	0		nc|ENSG00000160323|Q76LX8|ADAMTS13;ENST00000485925.5_1_9:136305545-136324175:+|nuORF;nc|ENSG00000160323|Q76LX8-3|ADAMTS13;ENSG00000160323|ENST00000355699|ADAMTS13	nc|ENSG00000160323|Q76LX8|ADAMTS13	nc|ENSG00000160323|Q76LX8|ADAMTS13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.29241943359375	2	471.274367	940.53418	0.36315	0.00017114	0.94171	0.0004438	1.3049	0.00061495	471.27494775946224	52.92	0.2667	52.773	52.569	52.835	-0.14723					9	6	2	0	0	0	0.022083	1	5663	5663		99.375	25.4	1	43203			2653	18425	1595	1598	3435	3435					0.0615347378881097
ALVRPEASV	9	Unmodified	_ALVRPEASV_					0	0	0		nc|ENSG00000160323|Q76LX8|ADAMTS13;ENST00000485925.5_1_9:136305545-136324175:+|nuORF;nc|ENSG00000160323|Q76LX8-3|ADAMTS13;ENSG00000160323|ENST00000355699|ADAMTS13	nc|ENSG00000160323|Q76LX8|ADAMTS13	nc|ENSG00000160323|Q76LX8|ADAMTS13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.274367	940.53418	0.72455	0.00034146	0.12467	5.8754E-05	0.84922	0.00040022	471.2742987431406	52.645	0.26091	52.737	52.565	52.826	0.091938	-0.018127	-0.00054827	NaN	99.375	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70099			2654	18425	1595	1598							0.0615347378881097
ALVRPLSLP	9	Unmodified	_ALVRPLSLP_					0	0	0			REV__ENST00000546006.5_1_16:30770549-30771803:-|nuORF	REV__ENST00000546006.5_1_16:30770549-30771803:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.3109436035156	2	483.310752	964.606951	-0.24784	-0.00011978	0.66093	0.00031943	0.41309	0.00019965	483.3108008902651	67.384	1.009	67.096	66.623	67.632	-0.28834					68	24	4	0	0	0	0.59099	1	8030	8030		53.351	6.585	1	2378900	+		2655	34707	1596	1599	3436	3436					0.1232322758223745
ALVRPRASL	9	Unmodified	_ALVRPRASL_					0	0	0			REV__ENST00000580420.1_1_18:29522783-29523056:+|nuORF	REV__ENST00000580420.1_1_18:29522783-29523056:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.8130187988281	2	491.811451	981.608348	0.081424	4.0045E-05	3.1864	0.0015671	3.2678	0.0016071	491.8125575242196	102.02	2.0218	102.01	100.81	102.83	-0.0054474					63	46	2	0	0	0	0.62163	1	12974	12974		51.335	3.4199	1	346510	+		2656	35516	1597	1600	3437	3437					0.11680861670993181
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7951354980469	2	476.794935	951.575317	1.1094	0.00052898	-0.74966	-0.00035744	0.35979	0.00017154	476.7943845975069	69.962	0.52803	69.962	69.588	70.116	0					31	14	3	0	0	0	0.040175	2	8437	8437;8447		133.47	75.658	1	2495200			2657	9070	1598	1601	3438;3439	3438					0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7951965332031	2	476.794935	951.575317	1.1413	0.00054418	-0.59434	-0.00028338	0.54699	0.0002608	476.7943963505628	70.273	0.4643	69.98	69.673	70.137	-0.29291					28	12	3	0	0	0	0.040175	3	8455	8445;8455;8466		133.47	83.445	1	2890800			2658	9070	1598	1601	3440;3441;3442	3441					0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	OPSCC_39_ClassI_Rep-3	3	476.7955322265625	2	476.794935	951.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.98	1	69.993	69.493	70.493	0.012421								0	0	0	0.024645	1	8365	8365		123.99	66.177	1				2659	9070	1598	1601	3443	3443					0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	OPSCC_39_ClassI_Rep-3	3	476.7955017089844	2	476.794935	951.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.051	1	70.064	69.564	70.564	0.012421								0	0	0	0.014926	1	8376	8376		138.48	82.975	1				2660	9070	1598	1601	3444	3444					0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MSMS	OPSCC_39_ClassI_Rep-3	3	476.7967834472656	2	476.794935	951.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.132	1	70.145	69.645	70.645	0.012421								0	0	0	0.014926	1	8388	8388		138.48	69.693	1				2661	9070	1598	1601	3445	3445					0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.794935	951.575317	0.10689	5.0963E-05	-0.11195	-5.3376E-05	-0.0050622	-2.4136E-06	476.7947939579203	70.298	0.49366	70.03	69.703	70.197	-0.26852	0.091372	0.00012424	NaN	133.47	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497320			2662	9070	1598	1601							0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	476.794935	951.575317	-0.017508	-8.3479E-06	0.08189	3.9045E-05	0.064381	3.0697E-05	476.79482894449995	70.13	0.5353	69.879	69.608	70.143	-0.25063	-0.0593	0.00030908	NaN	133.47	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	593990			2663	9070	1598	1601							0.09759234828288754
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.794935	951.575317	0.19569	9.3303E-05	-0.075797	-3.614E-05	0.11989	5.7163E-05	476.7947727111049	70.063	0.4905	69.84	69.597	70.087	-0.22245	-0.098149	0.00015871	NaN	133.47	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532040			2664	9070	1598	1601							0.09759234828288754
ALVTAALLP	9	Unmodified	_ALVTAALLP_					0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7798767089844	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	0.85941	1	3495	3495		35.201	0	1	6285600	+		2665	24959	1599	1602	3446	3446					0.10388447425293634
ALVTAALLP	9	Unmodified	_ALVTAALLP_					0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	434.778754	867.542954	0.072718	3.1616E-05	2.8406	0.001235	2.9133	0.0012666	434.77984164352523	46.699	1.5772	46.505	46.165	47.742	-0.19387					162	43	6	0	0	0	0.78069	2	4500	4500;4559		40.573	5.3719	1	7314300	+		2666	24959	1599	1602	3447;3448	3447					0.10388447425293634
ALVTSCSLAPG	11	Unmodified	_ALVTSCSLAPG_					0	0	0			REV__ENST00000308595.9_1_11:67052957-67053431:+|nuORF	REV__ENST00000308595.9_1_11:67052957-67053431:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2880554199219	2	509.765517	1017.51648	-0.59155	-0.00030155	-2.329	-0.0011873	-2.9206	-0.0014888	509.76412232333587	65.481	1.1411	65.229	64.743	65.885	-0.25112					55	27	3	0	0	0	0.024752	1	7405	7405		32.812	1.2826	1	1231900	+		2667	30154	1600	1603	3449	3449					0.008423904716437391
ALVVIVVGSV	10	Unmodified	_ALVVIVVGSV_					0	0	0			REV__ENSG00000188883|ENST00000340940|KLRG2	REV__ENSG00000188883|ENST00000340940|KLRG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7742614746094	2	478.312961	954.611368	0.40115	0.00019188	1.4016	0.00067039	1.8027	0.00086226	478.3125941891384	68.975	0.98801	68.975	68.641	69.629	0					55	25	4	0	0	0	0.03519	1	8334	8334		57.811	8.3697	1	446510	+		2668	28074	1601	1604	3450	3450					0.13224692005155703
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2637023925781	2	450.263468	898.512382	0.15289	6.8842E-05	-0.28476	-0.00012822	-0.13187	-5.9376E-05	450.26327838024787	61.013	1.3879	61.013	60.692	62.08	0					132	36	5	0	0	0	0.0152	6	7023	7023;7033;7045;7058;7071;7083		211.39	63.183	1	11818000			2669	1135	1602	1605	3451;3452;3453;3454;3455;3456	3451					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2633972167969	2	450.263468	898.512382	0.1245	5.6059E-05	-0.18529	-8.343E-05	-0.060788	-2.7371E-05	450.2633119583494	61.288	1.4507	61.062	60.669	62.12	-0.22597					122	38	5	0	0	0	0.013333	6	7039	7028;7039;7050;7062;7076;7093		191.63	58.157	1	10628000			2670	1135	1602	1605	3457;3458;3459;3460;3461;3462	3458					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.26324462890625	2	450.263468	898.512382	-0.18309	-8.2438E-05	0.08718	3.9254E-05	-0.095908	-4.3184E-05	450.26345258932776	61.01	1.5673	61.081	60.529	62.096	0.071125					123	41	5	0	0	0	0.0152	6	6934	6934;6944;6956;6968;6980;6996		207.6	59.398	1	10058000			2671	1135	1602	1605	3463;3464;3465;3466;3467;3468	3463					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2636413574219	2	450.263468	898.512382	0.14807	6.6669E-05	-0.031381	-1.4129E-05	0.11669	5.2539E-05	450.2633476617416	61.354	1.4421	61.148	60.772	62.214	-0.20599					94	35	4	0	0	0	0.013887	4	6863	6840;6851;6863;6875		207.6	76.257	1	4164800			2672	1135	1602	1605	3469;3470;3471;3472	3471					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2636413574219	2	450.263468	898.512382	-0.85061	-0.000383	0.96945	0.00043651	0.11885	5.3512E-05	450.26379212976593	61.321	1.5141	61.145	60.753	62.267	-0.1761					98	37	4	0	0	0	0.013333	5	6862	6839;6850;6862;6875;6889		191.63	43.42	1	4143000			2673	1135	1602	1605	3473;3474;3475;3476;3477	3475					0.05906669040234647
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.2632141113281	2	450.263468	898.512382	-0.46269	-0.00020833	0.47585	0.00021426	0.013161	5.9261E-06	450.2635874718384	61.411	1.5188	61.154	60.771	62.29	-0.25725					97	37	4	0	0	0	0.0152	4	6851	6842;6851;6863;6876		191.63	58.157	1	4149800			2674	1135	1602	1605	3478;3479;3480;3481	3479					0.05906669040234647
ALVWWPSL	8	Unmodified	_ALVWWPSL_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;ENST00000568983.5_1_16:89811164-89816202:-|nuORF;ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENSG00000187741|ENST00000389301|FANCA;ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.76983642578125	2	486.271096	970.527639	-0.77883	-0.00037872	0.92604	0.00045031	0.14721	7.1583E-05	486.2717083356768	35.222	0.98243	35.222	34.746	35.728	0					73	25	5	0	0	0	0.027866	1	2733	2733		26.796	12.132	1	776110			2675	9654;11991	1603	1606	3482	3482					0.04119580628082531
ALWCLTDL	8	Carbamidomethyl (C)	_ALWC(Carbamidomethyl (C))LTDL_	ALWC(1)LTDL		ALWC(87)LTDL		0	1	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2513122558594	2	496.249503	990.484453	0.49622	0.00024625	2.4893	0.0012353	2.9855	0.0014816	496.25061304573103	61.194	0.83585	61.194	60.884	61.72	0					48	21	3	0	0	0	0.48546	1	7066	7066		86.935	10.088	1	2696400	+		2676	19208	1604	1607	3483	3483	243				-0.011169772115181331
ALWCLTDL	8	Carbamidomethyl (C)	_ALWC(Carbamidomethyl (C))LTDL_	ALWC(1)LTDL		ALWC(100)LTDL		0	1	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.25103759765625	2	496.249503	990.484453	0.072987	3.622E-05	2.8614	0.00142	2.9344	0.0014562	496.25078855097	61.428	0.86682	61.201	60.86	61.727	-0.22663					49	22	3	0	0	0	0.37803	1	7070	7070		100.27	28.895	1	2826000	+		2677	19208	1604	1607	3484	3484	243				-0.011169772115181331
ALWDKLFNL	9	Unmodified	_ALWDKLFNL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3136596679688	2	560.313492	1118.61243	-1.7783	-0.00099639	1.8152	0.0010171	0.036883	2.0666E-05	560.3143872654739	92.613	1.1285	92.469	92.047	93.175	-0.14356					72	26	5	0	0	0	0.053401	3	11384	11362;11373;11384		127.46	53.207	1	3551700			2678	1175;38049	1605	1608	3485;3486;3487	3487					0.057869063740326965
ALWDKLFNL	9	Unmodified	_ALWDKLFNL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3135375976562	2	560.313492	1118.61243	-0.092018	-5.1559E-05	0.13399	7.5075E-05	0.04197	2.3516E-05	560.3134332291227	92.674	0.96471	92.552	92.182	93.147	-0.12241					84	22	5	0	0	0	0.03666	5	11399	11377;11388;11399;11411;11425		136.27	37.639	1	3300200			2679	1175;38049	1605	1608	3488;3489;3490;3491;3492	3490					0.057869063740326965
ALWDKLFNL	9	Unmodified	_ALWDKLFNL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.313720703125	2	560.313492	1118.61243	-0.14328	-8.0281E-05	0.19522	0.00010938	0.051941	2.9103E-05	560.3134821234876	92.779	1.2387	92.635	92.288	93.526	-0.14395					74	28	4	0	0	0	0.03201	4	11395	11373;11383;11395;11408		139.97	30.17	1	3669000			2680	1175;38049	1605	1608	3493;3494;3495;3496	3495					0.057869063740326965
ALWDSQTV	8	Unmodified	_ALWDSQTV_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2511901855469	2	460.229625	918.444697	0.65471	0.00030132	3.2234	0.0014835	3.8781	0.0017848	460.23101124497737	67.591	0.93336	67.615	67.27	68.203	0.023911					42	23	2	0	0	0	0.027866	1	7965	7965		38.806	1.647	1	446440			2681	1672	1606	1609	3497	3497					-0.017787808905723068
ALWDSQTV	8	Unmodified	_ALWDSQTV_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	460.229625	918.444697	0.33062	0.00015216	3.352	0.0015427	3.6826	0.0016949	460.2310555673753	67.606	0.93532	67.606	67.205	68.14	0	0.012039	-6.6121E-06	NaN	30.504	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300180			2682	1672	1606	1609							-0.017787808905723068
ALWDSQTV	8	Unmodified	_ALWDSQTV_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	460.229625	918.444697	0.16976	7.8127E-05	3.7516	0.0017266	3.9213	0.0018047	460.2312197342012	67.849	0.9082	67.561	67.268	68.176	-0.28834	-0.033163	0.00036116	NaN	30.504	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307960			2683	1672	1606	1609							-0.017787808905723068
ALWETEVYI	9	Unmodified	_ALWETEVYI_					0	0	0		ENST00000463287.1_1_22:38508170-38508779:-|nuORF;BAIAP2L2-PLA2G6|1|fusion;nc|ENSG00000184381|O60733-2|PLA2G6;ENSG00000184381|ENST00000332509|PLA2G6	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.3088989257812	2	562.28714	1122.55973	0.07575	4.2593E-05	0.21842	0.00012282	0.29417	0.00016541	562.2871856881155	88.05	0.99693	88.05	87.728	88.725	0					55	23	4	0	0	0	0.018819	1	11105	11105		110.34	19.967	1	1227100			2684	175	1607	1610	3498	3498					0.0033490352057015116
ALWETEVYI	9	Unmodified	_ALWETEVYI_					0	0	0		ENST00000463287.1_1_22:38508170-38508779:-|nuORF;BAIAP2L2-PLA2G6|1|fusion;nc|ENSG00000184381|O60733-2|PLA2G6;ENSG00000184381|ENST00000332509|PLA2G6	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.3111572265625	2	562.28714	1122.55973	0.38935	0.00021893	-0.063675	-3.5804E-05	0.32568	0.00018313	562.2870272768164	88.027	0.82695	88.046	87.756	88.583	0.018555					55	19	4	0	0	0	0.01589	1	11015	11015		115.46	13.858	1	1074800			2685	175	1607	1610	3499	3499					0.0033490352057015116
ALWETEVYI	9	Unmodified	_ALWETEVYI_					0	0	0		ENST00000463287.1_1_22:38508170-38508779:-|nuORF;BAIAP2L2-PLA2G6|1|fusion;nc|ENSG00000184381|O60733-2|PLA2G6;ENSG00000184381|ENST00000332509|PLA2G6	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.28714	1122.55973	-0.34212	-0.00019237	4.7317	0.0026605	4.3895	0.0024682	562.2904841395545	88.041	0.38718	87.862	87.695	88.082	-0.17875	-0.12331	0.0050982	NaN	115.46	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132680			2686	175	1607	1610							0.0033490352057015116
ALWGELLR	8	Unmodified	_ALWGELLR_					0	0	0		ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2816467285156	2	479.279452	956.544351	0.17719	8.4923E-05	2.1289	0.0010203	2.3061	0.0011053	479.27978105577375	81.39	0.93456	81.39	81.178	82.113	0					30	22	2	0	0	0	0.91239	1	10121	10121		50.025	2.1089	1	1158600			2687	16280	1608	1611	3500	3500					0.06434081514055379
ALWHWPEDS	9	Unmodified	_ALWHWPEDS_					0	0	0		ENST00000498794.1_1_3:49054806-49055376:-|nuORF;ENST00000467457.5_1_3:49053892-49055376:-|nuORF;ENST00000484831.5_1_3:49054806-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3	ENST00000498794.1_1_3:49054806-49055376:-|nuORF;nc|ENSG00000178149|Q5D0E6-4|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7780151367188	2	570.759081	1139.50361	0.11504	6.566E-05	1.2608	0.00071964	1.3759	0.0007853	570.758842491826	32.257	0.56094	32.02	31.697	32.258	-0.23666					21	12	3	0	0	0	0.024541	1	2239	2239		23.042	6.5693	1	123860			2688	8796;14838	1609	1612	3501	3501					-0.06056304596222617
ALWNAGAQ	8	Unmodified	_ALWNAGAQ_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.70989990234375	2	415.711402	829.408252	-0.76262	-0.00031703	-3.9965	-0.0016614	-4.7591	-0.0019784	415.7097228923088	26.126	2.4926	25.963	25.457	27.95	-0.16331					138	63	4	0	0	0	1.0017	1	1306	1306		37.028	2.8559	1	18466000			2689	9763	1610	1613	3502	3502					-0.013276129966243388
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.779541015625	2	529.779482	1057.54441	0.023187	1.2284E-05	-0.45997	-0.00024368	-0.43679	-0.0002314	529.779200074392	86.149	1.195	86.149	85.789	86.984	0					63	27	4	0	0	0	0.01452	5	10808	10798;10808;10820;10832;10844		217.64	72.677	1	8686100			2690	5690	1611	1614	3503;3504;3505;3506;3507	3504					0.017940367233904908
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7794799804688	2	529.779482	1057.54441	-0.41551	-0.00022013	-0.11281	-5.9764E-05	-0.52832	-0.00027989	529.779365984544	86.1	1.153	86.055	85.778	86.931	-0.045105					63	26	5	0	0	0	0.009093	5	10785	10762;10773;10785;10797;10811		234.63	86.592	1	7430700			2691	5690	1611	1614	3508;3509;3510;3511;3512	3510					0.017940367233904908
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7794189453125	2	529.779482	1057.54441	-0.9687	-0.0005132	0.35086	0.00018588	-0.61783	-0.00032732	529.779609889353	86.094	1.276	86.118	85.778	87.054	0.023666					70	29	5	0	0	0	0.01452	5	10726	10716;10726;10738;10750;10763		201.49	66.677	1	8436500			2692	5690	1611	1614	3513;3514;3515;3516;3517	3514					0.017940367233904908
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7794799804688	2	529.779482	1057.54441	0.020672	1.0952E-05	-0.056322	-2.9838E-05	-0.03565	-1.8887E-05	529.7793013122537	86.152	0.73918	85.965	85.602	86.341	-0.18696					47	16	4	0	0	0	0.077175	2	10448	10448;10461		118.74	25.548	1	1080800			2693	5690	1611	1614	3518;3519	3518					0.017940367233904908
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7791748046875	2	529.779482	1057.54441	0.28464	0.00015079	-0.30427	-0.0001612	-0.019634	-1.0402E-05	529.7791295977478	86.068	0.69486	85.926	85.583	86.278	-0.14217					41	15	4	0	0	0	0.072054	3	10461	10440;10450;10461		120.62	19.02	1	1034500			2694	5690	1611	1614	3520;3521;3522	3522					0.017940367233904908
ALWNEEALL	9	Unmodified	_ALWNEEALL_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7796630859375	2	529.779482	1057.54441	0.27376	0.00014503	-0.33973	-0.00017998	-0.065968	-3.4948E-05	529.7791012003232	86.089	0.69349	85.952	85.619	86.312	-0.13734					47	15	4	0	0	0	0.03849	3	10437	10426;10437;10449		134.81	30.754	1	997770			2695	5690	1611	1614	3523;3524;3525	3524					0.017940367233904908
ALWRLFGL	8	Unmodified	_ALWRLFGL_					0	0	0			REV__ENSG00000225968|ENST00000424383|ELFN1	REV__ENSG00000225968|ENST00000424383|ELFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.27960205078125	2	488.292362	974.570172	0.05218	2.5479E-05	2.0486	0.0010003	2.1008	0.0010258	488.292892349459	77.428	0.25351	77.218	77.122	77.376	-0.21087					8	5	2	0	0	0	0.027866	1	9538	9538		21.702	0	1	41990	+		2696	28869	1612	1615	3526	3526					0.0818697575632541
ALWSLPLYL	9	Unmodified	_ALWSLPLYL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.312744140625	2	538.312961	1074.61137	0.34729	0.00018695	0.64387	0.0003466	0.99115	0.00053355	538.3133290051029	106.55	0.51947	106.55	106.36	106.88	0					31	17	3	0	0	0	0.20304	3	13685	13678;13685;13694		88.643	20.158	1	342280			2697	10612	1613	1616	3527;3528;3529	3528					0.07704692005131619
ALWSLPLYL	9	Unmodified	_ALWSLPLYL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.311767578125	2	538.312961	1074.61137	-0.61004	-0.00032839	1.3562	0.00073008	0.7462	0.00040169	538.3136383120021	106.59	0.4069	106.59	106.4	106.81	0.0018311					18	12	2	0	0	0	0.36105	2	13605	13605;13613		68.485	7.7867	1	206080			2698	10612	1613	1616	3530;3531	3530					0.07704692005131619
ALWSLPLYL	9	Unmodified	_ALWSLPLYL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	538.312961	1074.61137	-0.40842	-0.00021986	0.83125	0.00044747	0.42283	0.00022762	538.3131669701199	106.49	0.3913	106.49	106.33	106.72	-0.0013123	0.047928	8.7802E-05	NaN	88.643	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269770			2699	10612	1613	1616							0.07704692005131619
ALWSLPLYL	9	Unmodified	_ALWSLPLYL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.312961	1074.61137	-0.28031	-0.0001509	0.46246	0.00024895	0.18215	9.8053E-05	538.3130714208019	106.37	0.26848	106.25	106.11	106.37	-0.1238	-0.19807	-0.00030924	NaN	88.643	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85287			2700	10612	1613	1616							0.07704692005131619
ALWSLPLYL	9	Unmodified	_ALWSLPLYL_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	538.312961	1074.61137	-0.21318	-0.00011476	0.15815	8.5135E-05	-0.055031	-2.9624E-05	538.3130440485	106.5	0.26424	106.33	106.16	106.42	-0.16133	-0.10948	-0.00063687	NaN	88.643	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93323			2701	10612	1613	1616							0.07704692005131619
ALWVGLGAEV	10	Unmodified	_ALWVGLGAEV_					0	0	0			REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF	REV__ENST00000542643.6_1_1:21923469-21929393:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7825012207031	2	507.784567	1013.55458	-0.10768	-5.468E-05	-3.8768	-0.0019686	-3.9845	-0.0020233	507.7825272849497	42.414	1.3311	42.44	42.186	43.517	0.026012					84	36	4	0	0	0	0.87795	1	3835	3835		55.504	6.0627	1	6576800	+		2702	31306	1614	1617	3532	3532					0.048346444486242035
ALYDEVRTV	9	Unmodified	_ALYDEVRTV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2825317382812	2	533.282389	1064.55022	-1.0345	-0.0005517	0.72672	0.00038755	-0.30781	-0.00016415	533.2826762982678	54.408	1.0375	54.408	53.907	54.944	0					67	29	4	0	0	0	0.014738	1	5932	5932		163.15	96.722	1	5972900			2703	2338	1615	1618	3533	3533					0.02053135235018999
ALYDEVRTV	9	Unmodified	_ALYDEVRTV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.2821044921875	2	533.282389	1064.55022	0.25471	0.00013583	-0.54079	-0.00028839	-0.28608	-0.00015256	533.2819954833413	54.144	0.71833	54.242	53.907	54.626	0.098015					58	20	4	0	0	0	0.013337	2	5833	5821;5833		221.33	125.14	1	6137600			2704	2338	1615	1618	3534;3535	3535					0.02053135235018999
ALYDEVRTV	9	Unmodified	_ALYDEVRTV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.282389	1064.55022	-0.59822	-0.00031902	0.51612	0.00027524	-0.082101	-4.3783E-05	533.282314580575	54.507	0.50627	54.364	54.144	54.65	-0.14338	0.010991	0.00039516	NaN	163.15	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1004500			2705	2338	1615	1618							0.02053135235018999
ALYDEVRTV	9	Unmodified	_ALYDEVRTV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.282389	1064.55022	-0.46944	-0.00025035	0.54951	0.00029304	0.080067	4.2698E-05	533.2824807740603	54.627	0.5351	54.396	54.213	54.748	-0.23087	0.043812	0.00043078	NaN	163.15	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1077600			2706	2338	1615	1618							0.02053135235018999
ALYDNVEKL	9	Unmodified	_ALYDNVEKL_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.784912109375	2	532.784764	1063.55498	-0.83071	-0.00044259	0.20971	0.00011173	-0.621	-0.00033086	532.7849859967238	56.738	1.1712	56.738	56.174	57.345	0					102	32	5	0	0	0	0.013719	3	6327	6327;6339;6349		168.26	54.847	1	25085000			2707	1431	1616	1619	3536;3537;3538	3536					0.025740193777892273
ALYDNVEKL	9	Unmodified	_ALYDNVEKL_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.78515625	2	532.784764	1063.55498	-0.73197	-0.00038998	-0.048639	-2.5914E-05	-0.78061	-0.0004159	532.7848303052731	56.888	1.0055	56.724	56.35	57.355	-0.16431					88	27	4	0	0	0	0.012922	3	6314	6314;6326;6337		172.25	53.031	1	23045000			2708	1431	1616	1619	3539;3540;3541	3539					0.025740193777892273
ALYDNVEKL	9	Unmodified	_ALYDNVEKL_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.784912109375	2	532.784764	1063.55498	-0.68907	-0.00036712	-0.082355	-4.3877E-05	-0.77142	-0.000411	532.7847787236926	56.503	1.2512	56.601	56.033	57.284	0.097893					104	34	5	0	0	0	0.012922	4	6209	6209;6221;6233;6245		172.25	54.847	1	22876000			2709	1431	1616	1619	3542;3543;3544;3545	3542					0.025740193777892273
ALYFPVLI	8	Unmodified	_ALYFPVLI_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A;ENSG00000178233|ENST00000451188|TMEM151B	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.3056640625	2	468.283672	934.552791	0.45381	0.00021251	-3.548	-0.0016614	-3.0941	-0.0014489	468.2817012665043	53.297	0.34671	53.038	52.803	53.15	-0.25838					11	8	2	0	0	0	0.027866	1	5561	5561		24.504	7.799	1	53810			2710	8888	1617	1620	3546	3546					0.08289635430662656
ALYGQPLLL	9	Unmodified	_ALYGQPLLL_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.29766845703125	2	494.29731	986.580068	0.91876	0.00045414	-0.80753	-0.00039916	0.11124	5.4984E-05	494.2968091058143	84.883	0.95119	84.883	84.463	85.414	0					63	22	4	0	0	0	0.4855	1	10623	10623		60.294	6.9425	1	3215800			2711	3354	1618	1621	3547	3547					0.08624118971033568
ALYGQPLLL	9	Unmodified	_ALYGQPLLL_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.2975769042969	2	494.29731	986.580068	-0.5174	-0.00025575	0.55259	0.00027314	0.035188	1.7393E-05	494.2974612350663	84.897	0.87215	84.826	84.469	85.341	-0.071571					61	20	4	0	0	0	0.20304	2	10589	10589;10600		88.643	13.54	1	3284500			2712	3354	1618	1621	3548;3549	3548					0.08624118971033568
ALYGQPLLL	9	Unmodified	_ALYGQPLLL_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.297119140625	2	494.29731	986.580068	-0.41322	-0.00020426	0.4437	0.00021932	0.030477	1.5064E-05	494.29743600543236	84.813	0.91248	84.838	84.456	85.369	0.025536					65	21	4	0	0	0	0.55828	1	10547	10547		55.504	4.1688	1	3694000			2713	3354	1618	1621	3550	3550					0.08624118971033568
ALYIQCMLL	9	Unmodified	_ALYIQCMLL_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2667846679688	2	534.285031	1066.55551	-0.061628	-3.2927E-05	1.4925	0.00079744	1.4309	0.00076451	534.2864198565411	54.521	0.20504	54.619	54.491	54.696	0.098015					7	5	2	0	0	0	0.024443	1	5887	5887		26.796	5.8492	1	143240	+		2714	26217	1619	1622	3551	3551					0.02489399501655498
ALYIRHAF	8	Unmodified	_ALYIRHAF_					0	0	0			REV__ENSG00000072422|ENST00000337910|RHOBTB1	REV__ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.7376708984375	2	495.779619	989.544686	-0.088512	-4.3882E-05	3.9456	0.0019561	3.8571	0.0019123	495.78147923268386	36.678	0.44384	36.462	36.245	36.689	-0.21661					24	10	3	0	0	0	0.027866	1	2874	2874		21.702	8.2483	1	469900	+		2715	20472	1620	1623	3552	3552					0.04949501233886622
ALYNDDDTEGS	11	Unmodified	_ALYNDDDTEGS_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.2391357421875	2	600.238572	1198.46259	-1.6893	-0.001014	2.2193	0.0013321	0.52996	0.0003181	600.2397702109681	48.741	0.98037	48.741	48.344	49.324	0					64	27	3	0	0	0	0.79111	1	4979	4979		58.23	5.141	1	3659000	+		2716	25610	1621	1624	3553	3553					-0.12870155217046886
ALYNDDDTEGS	11	Unmodified	_ALYNDDDTEGS_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	600.2391357421875	2	600.238572	1198.46259	-0.94504	-0.00056725	1.3653	0.00081952	0.42029	0.00025227	600.2392623707439	48.875	1.0455	48.722	48.398	49.443	-0.15277					72	28	3	0	0	0	0.849	1	5002	5002		54.722	6.7628	1	3392800	+		2717	25610	1621	1624	3554	3554					-0.12870155217046886
ALYNDDDTEGS	11	Unmodified	_ALYNDDDTEGS_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	600.2390747070312	2	600.238572	1198.46259	-1.5465	-0.00092827	2.142	0.0012857	0.59552	0.00035745	600.2396205184942	48.598	1.1557	48.665	48.265	49.421	0.066795					79	31	4	0	0	0	0.79111	1	4902	4902		58.23	18.977	1	3204300	+		2718	25610	1621	1624	3555	3555					-0.12870155217046886
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7840881347656	2	501.784567	1001.55458	0.4657	0.00023368	-0.93058	-0.00046695	-0.46489	-0.00023327	501.78406387204456	71.92	1.392	71.92	71.68	73.072	0					82	34	3	0	0	0	0.013805	5	8744	8721;8733;8744;8758;8769		167.82	66.224	1	20308000			2719	7048	1622	1625	3556;3557;3558;3559;3560	3558					0.05386644448617517
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7844543457031	2	501.784567	1001.55458	0.52581	0.00026384	-0.96498	-0.00048421	-0.43917	-0.00022037	501.7840526051912	72.304	1.462	72.023	71.769	73.231	-0.28124					90	36	3	0	0	0	0.013805	5	8756	8733;8744;8756;8767;8779		167.82	43.744	1	18919000			2720	7048	1622	1625	3561;3562;3563;3564;3565	3563					0.05386644448617517
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7840270996094	2	501.784567	1001.55458	0.56938	0.0002857	-1.0377	-0.00052071	-0.46833	-0.000235	501.784023765974	71.995	1.4161	72.004	71.765	73.181	0.0097733					87	35	3	0	0	0	0.013805	4	8660	8650;8660;8672;8684		183.89	56.433	1	21981000			2721	7048	1622	1625	3566;3567;3568;3569	3567					0.05386644448617517
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.7842102050781	2	501.784567	1001.55458	0.094063	4.72E-05	-0.99059	-0.00049706	-0.89653	-0.00044986	501.78390903724653	72.289	1.0114	72.012	71.745	72.756	-0.2769					47	23	3	0	0	0	0.17455	2	8457	8457;8468		94.006	21.333	1	3877700			2722	7048	1622	1625	3570;3571	3570					0.05386644448617517
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.78448486328125	2	501.784567	1001.55458	0.29963	0.00015035	-1.2366	-0.00062049	-0.93694	-0.00047014	501.783708279231	72.283	0.71041	72.018	71.759	72.469	-0.26456					36	16	3	0	0	0	0.06122	4	8478	8457;8466;8478;8490		124.59	44.882	1	3879400			2723	7048	1622	1625	3572;3573;3574;3575	3574					0.05386644448617517
ALYPNVVQV	9	Unmodified	_ALYPNVVQV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7845458984375	2	501.784567	1001.55458	-0.55112	-0.00027654	-1.1394	-0.00057171	-1.6905	-0.00084826	501.7837757406666	72.139	1.5315	71.941	71.428	72.96	-0.19811					61	36	3	0	0	0	0.040175	2	8439	8439;8451		133.47	48.554	1	3791800			2724	7048	1622	1625	3576;3577	3576					0.05386644448617517
ALYQHASTQLL	11	Unmodified	_ALYQHASTQLL_					0	0	0			REV__nc|ENSG00000166321|Q86X67-4|NUDT13	REV__nc|ENSG00000166321|Q86X67-4|NUDT13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.70947265625	3	415.559305	1243.65609	-0.31077	-0.00012914	1.0247	0.00042582	0.71392	0.00029668	415.559899815092	26.089	0.80522	25.921	25.7	26.506	-0.16816					38	22	3	0	0	0	0.024771	1	1325	1325		41.08	13.436	1	515400	+		2725	25999	1623	1626	3578	3578					0.04400471080521129
ALYRSIRGK	9	Unmodified	_ALYRSIRGK_					0	0	0			REV__ENST00000490753.1_1_20:2637050-2637903:+|nuORF	REV__ENST00000490753.1_1_20:2637050-2637903:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.3082275390625	2	532.322183	1062.62981	-0.33994	-0.00018096	3.2703	0.0017408	2.9303	0.0015599	532.3237736880982	70.721	0.43173	70.732	70.465	70.897	0.01133					16	9	2	0	0	0	0.024539	1	8478	8478		20.947	0	1	1150200	+		2726	21226	1624	1627	3579	3579					0.101002466996988
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	OPSCC_39_ClassI_Rep-1	1	480.7430419921875	2	480.742899	959.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.288	1	45.288	44.788	45.788	0								0	0	0	0.014252	1	4391	4391		157.99	75.749	1				2727	8705	1625	1628	3580	3580					-0.010110919992371237
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	OPSCC_39_ClassI_Rep-1	1	480.7430114746094	2	480.742899	959.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.347	1	45.347	44.847	45.847	0								0	0	0	0.0061176	1	4402	4402		173.85	80.653	1				2728	8705	1625	1628	3581	3581					-0.010110919992371237
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MSMS	OPSCC_39_ClassI_Rep-1	1	480.74267578125	2	480.742899	959.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.417	1	45.417	44.917	45.917	0								0	0	0	0.014252	1	4414	4414		157.99	78.277	1				2729	8705	1625	1628	3582	3582					-0.010110919992371237
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.74273681640625	2	480.742899	959.471246	-0.33914	-0.00016304	0.27794	0.00013362	-0.061203	-2.9423E-05	480.74291356470826	45.473	0.71507	45.324	45.044	45.759	-0.1488					48	20	3	0	0	0	0.013805	3	4397	4397;4407;4421		167.82	101.4	1	5033200			2730	8705	1625	1628	3583;3584;3585	3583					-0.010110919992371237
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7430725097656	2	480.742899	959.471246	-0.26208	-0.00012599	0.22083	0.00010616	-0.041243	-1.9827E-05	480.7428830131174	45.326	0.78436	45.37	45.038	45.822	0.043877					54	22	3	0	0	0	0.014251	3	4333	4333;4344;4357		183.89	112.6	1	5040100			2731	8705	1625	1628	3586;3587;3588	3586					-0.010110919992371237
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.742899	959.471246	-0.17675	-8.497E-05	0.249	0.00011971	0.072257	3.4737E-05	480.74273444791936	45.585	0.4415	45.332	45.124	45.566	-0.25252	-0.0099541	-2.651E-05	NaN	167.82	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179950			2732	8705	1625	1628							-0.010110919992371237
ALYSAEHGL	9	Unmodified	_ALYSAEHGL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.742899	959.471246	-0.34158	-0.00016421	1.0618	0.00051047	0.72025	0.00034626	480.7430268898131	45.545	0.3309	45.343	45.161	45.492	-0.20226	0.00044186	0.00075502	NaN	167.82	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273530			2733	8705	1625	1628							-0.010110919992371237
ALYSELLAV	9	Unmodified	_ALYSELLAV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7790832519531	2	489.778951	977.543348	0.54108	0.00026501	-0.59748	-0.00029263	-0.0564	-2.7623E-05	489.7784328232993	86.494	1.0258	86.494	86.042	87.067	0					74	23	5	0	0	0	0.062871	1	10857	10857		123.99	50.014	1	1130900			2734	2577	1626	1629	3589	3589					0.053678223544807224
ALYSELLAV	9	Unmodified	_ALYSELLAV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.77880859375	2	489.778951	977.543348	-0.010472	-5.1287E-06	-0.050169	-2.4572E-05	-0.060641	-2.9701E-05	489.77876430781134	86.464	0.85503	86.419	86.076	86.931	-0.045097					53	19	4	0	0	0	0.20304	1	10822	10822		88.643	14.668	1	1174200			2735	2577	1626	1629	3590	3590					0.053678223544807224
ALYSELLAV	9	Unmodified	_ALYSELLAV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.779052734375	2	489.778951	977.543348	-0.64557	-0.00031619	0.49497	0.00024243	-0.1506	-7.376E-05	489.7790361217799	86.448	0.89449	86.471	86.202	87.097	0.023666					60	20	4	0	0	0	0.062871	1	10776	10776		123.99	63.017	1	1415500			2736	2577	1626	1629	3591	3591					0.053678223544807224
ALYSELLAV	9	Unmodified	_ALYSELLAV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.778951	977.543348	-0.26899	-0.00013174	-0.066914	-3.2773E-05	-0.3359	-0.00016452	489.7788071685872	86.506	0.61213	86.319	86.035	86.647	-0.18696	-0.057584	0.00012718	NaN	123.99	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324370			2737	2577	1626	1629							0.053678223544807224
ALYSELLAV	9	Unmodified	_ALYSELLAV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.778951	977.543348	0.73411	0.00035955	-0.94799	-0.0004643	-0.21388	-0.00010475	489.7783670403754	86.402	0.7412	86.26	85.928	86.669	-0.14217	-0.11663	-0.00073588	NaN	123.99	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369700			2738	2577	1626	1629							0.053678223544807224
ALYSELLAV	9	Unmodified	_ALYSELLAV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.778951	977.543348	0.44064	0.00021581	-0.7974	-0.00039055	-0.35677	-0.00017474	489.778540498674	86.434	0.7426	86.297	85.875	86.618	-0.13734	-0.080239	-0.00058838	NaN	123.99	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325730			2739	2577	1626	1629							0.053678223544807224
ALYSTAMESIQ	11	Unmodified	_ALYSTAMESIQ_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.2350769042969	3	405.197156	1212.56964	-0.073652	-2.9844E-05	3.9358	0.0015948	3.8622	0.0015649	405.19885068907456	32.808	0.59906	32.815	32.518	33.117	0.0066261					30	15	4	0	0	0	0.024734	1	2285	2285		41.08	20.048	1	164340			2740	15202;9515	1627	1630	3592	3592					-0.028142765363554645
ALYSTAMESIQ	11	Unmodified	_ALYSTAMESIQ_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	405.197156	1212.56964	1.9719	0.00079902	2.3063	0.00093451	4.2782	0.0017335	405.1981005920156	32.695	0.53619	32.758	32.54	33.076	0.062885	-0.0062538	-0.00082131	NaN	41.08	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118260			2741	15202;9515	1627	1630							-0.028142765363554645
ALYSTAMESIQ	11	Unmodified	_ALYSTAMESIQ_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	405.197156	1212.56964	0.83677	0.00033906	2.8846	0.0011688	3.7214	0.0015079	405.1983642816096	32.965	0.48733	32.765	32.569	33.056	-0.20019	0.00050087	-0.00011833	NaN	41.08	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307080			2742	15202;9515	1627	1630							-0.028142765363554645
ALYTLTWY	8	Unmodified	_ALYTLTWY_					0	0	0			REV__nc|ENSG00000170835|P19835-2|CEL	REV__nc|ENSG00000170835|P19835-2|CEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7901000976562	2	515.765843	1029.51713	-0.25487	-0.00013145	-2.1274	-0.0010972	-2.3822	-0.0012287	516.266826120145	43.241	0.43053	43.128	42.891	43.322	-0.11253					18	11	2	0	0	0	0.027866	1	3956	3956		15.636	0	1	200070	+		2743	26512	1628	1631	3593	3593					0.0035555318299884675
ALYVAKMKH	9	Unmodified	_ALYVAKMKH_					0	0	0			REV__ENSG00000110719|ENST00000265686|TCIRG1	REV__ENSG00000110719|ENST00000265686|TCIRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2824096679688	2	530.802237	1059.58992	-0.32993	-0.00017513	-1.8791	-0.00099745	-2.2091	-0.0011726	531.3030472817422	39.839	0.18156	39.839	39.733	39.915	0					7	4	2	0	0	0	0.024517	1	3445	3445		19.36	0	1	60679	+		2744	21870	1629	1632	3594	3594					0.06250983704762803
AMAASPHAV	9	Unmodified	_AMAASPHAV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.7135925292969	2	427.713088	853.411622	-0.83437	-0.00035687	1.0331	0.00044186	0.1987	8.4986E-05	427.7134650823222	31.406	0.73871	31.406	31.131	31.869	0					37	17	3	0	0	0	0.20304	1	2096	2096		88.643	22.84	1	1449000			2745	8769	1630	1633	3595	3595					-0.020946862142636746
AMAASPHAV	9	Unmodified	_AMAASPHAV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.7135925292969	2	427.713088	853.411622	-0.27502	-0.00011763	0.53478	0.00022873	0.25977	0.00011111	427.71323893411954	31.36	0.78142	31.371	31.041	31.823	0.011797					38	18	3	0	0	0	0.15889	3	2063	2063;2073;2086		97.473	31.67	1	1767000			2746	8769	1630	1633	3596;3597;3598	3596					-0.020946862142636746
AMAASPHAV	9	Unmodified	_AMAASPHAV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.7135925292969	2	427.713088	853.411622	0.04821	2.062E-05	-0.20058	-8.5791E-05	-0.15237	-6.5171E-05	427.71302257312254	31.116	0.7337	31.185	30.912	31.646	0.068962					45	17	4	0	0	0	0.18276	2	1994	1994;2005		92.191	15.344	1	1289100			2747	8769	1630	1633	3599;3600	3599					-0.020946862142636746
AMAEDEISGQL	11	Unmodified	_AMAEDEISGQL_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.2666625976562	2	582.266078	1162.5176	-0.60006	-0.00034939	1.1963	0.00069657	0.59626	0.00034718	582.2666095960315	62.018	0.86811	61.761	61.383	62.251	-0.25725					43	21	3	0	0	0	0.61592	1	6961	6961		68.846	3.6889	1	3240100	+		2748	23500	1631	1634	3601	3601					-0.05715439950108703
AMAKARKP	8	Unmodified	_AMAKARKP_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7748107910156	2	436.760372	871.506192	0.29754	0.00012995	-0.85825	-0.00037485	-0.56071	-0.0002449	436.7598313057808	90.113	0.69383	90.096	89.751	90.445	-0.016716					20	16	2	0	0	0	0.027866	1	11398	11398		8.8223	0	1	438250			2749	9118	1632	1635	3602	3602					0.06529872327712383
AMAQGVRSI	9	Unmodified	_AMAQGVRSI_					0	0	0			REV__ENSG00000134910|ENST00000392708|STT3A	REV__ENSG00000134910|ENST00000392708|STT3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7541809082031	2	466.752744	931.490935	0.42242	0.00019717	-0.27839	-0.00012994	0.14403	6.7225E-05	466.75247400693956	37.586	0.68848	37.618	37.339	38.028	0.032269					42	18	4	0	0	0	0.48817	1	3019	3019		60.118	3.6845	1	2121800	+		2750	23496	1633	1636	3603	3603					0.02244960739869839
AMAQGVRSI	9	Unmodified	_AMAQGVRSI_					0	0	0			REV__ENSG00000134910|ENST00000392708|STT3A	REV__ENSG00000134910|ENST00000392708|STT3A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	466.752744	931.490935	-0.41909	-0.00019561	0.34778	0.00016233	-0.071304	-3.3282E-05	466.75278515652496	37.577	0.55904	37.577	37.343	37.902	0	0.04581	0.00028911	NaN	60.118	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2602700	+		2751	23496	1633	1636							0.02244960739869839
AMAQGVRSI	9	Unmodified	_AMAQGVRSI_					0	0	0			REV__ENSG00000134910|ENST00000392708|STT3A	REV__ENSG00000134910|ENST00000392708|STT3A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	466.752744	931.490935	0.42242	0.00019717	-0.27839	-0.00012994	0.14403	6.7225E-05	466.75247400693956	37.586	0.68848	37.618	37.339	38.028	0.032269	0.086964	-0.00029542	NaN	60.118	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2121800	+		2752	23496	1633	1636							0.02244960739869839
AMDLSSLKHSY	11	Unmodified	_AMDLSSLKHSY_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.89471435546875	3	417.872784	1250.59652	-0.53137	-0.00022204	-4.4094	-0.0018426	-4.9408	-0.0020646	417.87084597358387	29.302	1.065	29.129	28.85	29.915	-0.17258					56	24	4	0	0	0	0.02473	1	1888	1888		39.873	26.365	1	587520			2753	194	1634	1637	3604	3604					-0.018751679251636233
AMDLSSLKHSY	11	Unmodified	_AMDLSSLKHSY_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	417.872784	1250.59652	-0.92812	-0.00038784	-3.9565	-0.0016533	-4.8846	-0.0020411	417.87101459455687	29.454	1.0653	29.209	28.838	29.903	-0.24524	0.086148	0.00051938	NaN	39.873	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578850			2754	194	1634	1637							-0.018751679251636233
AMDLSSLKHSY	11	Unmodified	_AMDLSSLKHSY_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	417.872784	1250.59652	-0.027845	-1.1636E-05	-4.9341	-0.0020618	-4.9619	-0.0020734	417.87063630371625	29.18	0.88326	29.031	28.743	29.626	-0.14952	-0.092209	-0.00070615	NaN	39.873	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509090			2755	194	1634	1637							-0.018751679251636233
AMETVYMPG	9	Unmodified	_AMETVYMPG_					0	0	0			REV__ENSG00000134398|ENST00000256797|ERN2	REV__ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7717590332031	2	499.719721	997.424889	-0.70361	-0.00035161	0.72293	0.00036126	0.019323	9.6563E-06	499.7199922130912	28.349	0.45097	28.18	27.886	28.337	-0.16897					18	10	2	0	0	0	0.024466	1	1647	1647		42.474	19.432	1	110720	+		2756	23449	1635	1638	3605	3605					-0.07392616217191517
AMETVYMPG	9	Unmodified	_AMETVYMPG_					0	0	0			REV__ENSG00000134398|ENST00000256797|ERN2	REV__ENSG00000134398|ENST00000256797|ERN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.719721	997.424889	-0.75703	-0.0003783	0.72861	0.0003641	-0.028413	-1.4198E-05	499.71997828399003	28.197	0.3606	28.046	27.922	28.283	-0.15195	-0.10037	-6.4769E-05	NaN	33.516	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93951	+		2757	23449	1635	1638							-0.07392616217191517
AMFENFVSV	9	Unmodified	_AMFENFVSV_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.2471313476562	2	522.24696	1042.47937	0.41247	0.00021541	-0.22318	-0.00011656	0.18929	9.8854E-05	522.2466991387264	83.584	1.4125	83.372	82.399	83.812	-0.21159					59	32	3	0	0	0	0.025498	1	10079	10079		145.16	31.744	1	787470			2758	5071	1636	1639	3606	3606					-0.040172810741296416
AMFENFVSV	9	Unmodified	_AMFENFVSV_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.2472534179688	2	522.24696	1042.47937	0.67279	0.00035136	-0.42818	-0.00022362	0.24461	0.00012774	522.2465717994882	83.494	1.2297	83.324	82.561	83.79	-0.16916					59	28	3	0	0	0	0.086035	1	10086	10086		115.49	46.707	1	753450			2759	5071	1636	1639	3607	3607					-0.040172810741296416
AMFENFVSV	9	Unmodified	_AMFENFVSV_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1;ENST00000478100.3_1_9:100403935-100409818:+|nuORF	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.2472534179688	2	522.24696	1042.47937	0.23409	0.00012225	0.26661	0.00013923	0.5007	0.00026149	522.2469944588827	83.494	1.3211	83.355	82.523	83.844	-0.1386					66	30	4	0	0	0	0.015752	2	10066	10066;10078		158.07	75.834	1	664970			2760	5071	1636	1639	3608;3609	3608					-0.040172810741296416
AMFGKLMTI	9	Unmodified	_AMFGKLMTI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.2728576660156	2	506.271924	1010.52929	0.59055	0.00029898	-0.48097	-0.0002435	0.10958	5.5478E-05	506.2716033603661	70.729	0.70482	70.729	70.44	71.145	0					48	16	4	0	0	0	0.12602	1	8543	8543		104.75	33.451	1	962130			2761	3893	1637	1640	3610	3610					0.02445130330181655
AMFGKLMTI	9	Unmodified	_AMFGKLMTI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.271924	1010.52929	0.83013	0.00042027	-0.50679	-0.00025657	0.32335	0.0001637	506.27155539740147	71.077	0.81426	70.784	70.455	71.269	-0.29292	0.031732	-0.00031507	NaN	104.75	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	913640			2762	3893	1637	1640							0.02445130330181655
AMFGKLMTI	9	Unmodified	_AMFGKLMTI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.271924	1010.52929	-0.0088784	-4.4949E-06	0.45478	0.00023024	0.4459	0.00022575	506.2720235435182	70.828	0.76948	70.839	70.55	71.319	0.010742	0.086626	0.00065856	NaN	104.75	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158400			2763	3893	1637	1640							0.02445130330181655
AMFGKLMTI	9	Unmodified	_AMFGKLMTI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.271924	1010.52929	-0.14584	-7.3835E-05	0.75054	0.00037998	0.60469	0.00030614	506.2722889144877	70.915	0.53889	70.658	70.499	71.038	-0.25713	-0.094321	0.00095803	NaN	104.75	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235470			2764	3893	1637	1640							0.02445130330181655
AMGPPYWSL	9	Unmodified	_AMGPPYWSL_					0	0	0			REV__ENST00000329006.5_1_1:38261374-38265268:+|nuORF	REV__ENST00000329006.5_1_1:38261374-38265268:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7834167480469	2	511.244221	1020.47389	-0.47652	-0.00024362	-3.8807	-0.001984	-4.3573	-0.0022276	511.74356523493094	53.204	0.75635	53.204	52.789	53.545	0					57	20	4	0	0	0	0.024466	1	5747	5747		33.516	0	1	1059300	+		2765	27733	1638	1641	3611	3611					-0.035529598659422845
AMHFRAPI	8	Unmodified	_AMHFRAPI_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7533264160156	2	471.752547	941.490542	0.22043	0.00010399	2.1636	0.0010207	2.384	0.0011247	471.7535064273125	28.189	0.66369	28.27	27.91	28.574	0.080811					34	15	3	0	0	0	0.88442	1	1586	1586		52.299	2.8576	1	1093000			2766	9740	1639	1642	3612	3612					0.01745585810681405
AMHRFALSL	9	Unmodified	_AMHRFALSL_					0	0	0			REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2633056640625	2	523.284211	1044.55387	0.70835	0.00037067	3.5781	0.0018724	4.2864	0.002243	523.2856860212027	54.595	0.92433	54.389	53.761	54.685	-0.20613					35	25	2	0	0	0	0.024292	1	5735	5735		58.782	5.4305	1	273360	+		2767	24010	1640	1643	3613	3613					0.03337526527934642
AMIDQVLEL	9	Unmodified	_AMIDQVLEL_					0	0	0		ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2757568359375	2	516.275718	1030.53688	0.584	0.0003015	-1.2524	-0.00064657	-0.66837	-0.00034506	516.2748944233991	88.852	0.7172	88.828	88.48	89.197	-0.023514					39	16	3	0	0	0	0.33603	1	11173	11173		70.816	6.6089	1	502140			2768	7962;18503	1641	1644	3614	3614					0.022835611314576454
AMIDQVLEL	9	Unmodified	_AMIDQVLEL_					0	0	0		ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2764892578125	2	516.275718	1030.53688	-0.12717	-6.5654E-05	-0.43575	-0.00022497	-0.56292	-0.00029062	516.2751983434679	88.922	0.84933	88.938	88.45	89.299	0.015907					60	19	5	0	0	0	0.40693	1	11143	11143		65.465	3.7741	1	599520			2769	7962;18503	1641	1644	3615	3615					0.022835611314576454
AMIDQVLEL	9	Unmodified	_AMIDQVLEL_					0	0	0		ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.275718	1030.53688	-0.61091	-0.0003154	1.2969	0.00066958	0.68604	0.00035418	516.275800101785	88.864	0.41978	88.693	88.505	88.924	-0.17054	-0.10958	0.0021153	NaN	70.816	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63317			2770	7962;18503	1641	1644							0.022835611314576454
AMIDQVLEL	9	Unmodified	_AMIDQVLEL_					0	0	0		ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.275718	1030.53688	0.014772	7.6266E-06	0.012816	6.6168E-06	0.027589	1.4243E-05	516.2745214427265	88.868	0.38203	88.737	88.528	88.91	-0.13135	-0.066443	0.00078942	NaN	70.816	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52191			2771	7962;18503	1641	1644							0.022835611314576454
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.3045654296875	2	537.30481	1072.59507	-0.39728	-0.00021346	0.7558	0.00040609	0.35852	0.00019264	537.3050982896028	72.825	2.0267	72.825	71.489	73.516	0					61	37	3	0	0	0	0.16638	1	8844	8844		95.815	5.4453	1	1581300			2772	7541	1642	1645	3616	3616					0.061672427767234694
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.3052978515625	2	537.30481	1072.59507	-0.036349	-1.9531E-05	0.20044	0.0001077	0.16409	8.8167E-05	537.3047418538617	73	1.836	72.718	71.731	73.567	-0.28124					58	31	3	0	0	0	0.1158	2	8854	8854;8867		107.01	3.6662	1	1423200			2773	7541	1642	1645	3617;3618	3617					0.061672427767234694
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3046264648438	2	537.30481	1072.59507	-0.23951	-0.00012869	0.7948	0.00042705	0.55529	0.00029836	537.3050053227965	72.662	1.7167	72.672	71.841	73.558	0.0097733					69	35	3	0	0	0	0.30449	2	8759	8759;8771		75.043	7.5496	1	1553900			2774	7541	1642	1645	3619;3620	3619					0.061672427767234694
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.30481	1072.59507	-0.38002	-0.00020419	-3.7131	-0.0019951	-4.0932	-0.0021993	537.801862010255	73.301	1.6645	73.024	71.51	73.174	-0.2769	0.29346	-0.0045138	NaN	107.01	71	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370620			2775	7541	1642	1645							0.061672427767234694
AMIELVERL	9	Unmodified	_AMIELVERL_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.30481	1072.59507	-1.1365	-0.00061062	1.0522	0.00056534	-0.084289	-4.5289E-05	537.305132724172	72.614	0.63309	72.415	71.992	72.625	-0.19811	-0.31553	0.00060705	NaN	107.01	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315270			2776	7541	1642	1645							0.061672427767234694
AMIHKQEKRNL	11	Unmodified	_AMIHKQEKRNL_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.26947021484375	3	456.590722	1366.75034	0.025713	1.174E-05	-2.1888	-0.00099939	-2.1631	-0.00098765	456.5895505482856	47.795	0.88161	47.795	47.395	48.277	0					57	26	3	0	0	0	0.024748	1	4792	4792		24.232	4.9691	1	999140	+		2777	21424	1643	1646	3621	3621					0.08163286631020128
AMINLPLSV	9	Unmodified	_AMINLPLSV_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2779235839844	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.92825	1	9960	9960		30.504	1.3541	1	7158600	+		2778	27385	1644	1647	3622	3622					0.0564818620226788
AMIQSFTVFL	10	Unmodified	_AMIQSFTVFL_					0	0	0			REV__ENST00000333050.6_1_16:8889558-8889804:-|nuORF	REV__ENST00000333050.6_1_16:8889558-8889804:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.2326049804688	2	578.807185	1155.59982	-1.4889	-0.0008618	3.6232	0.0020972	2.1343	0.0012354	578.8093122886914	38.935	0.62275	38.935	38.597	39.219	0					31	16	3	0	0	0	0.03519	1	3311	3311		66.429	39.736	1	374110	+		2779	30501	1645	1648	3623	3623					0.02824126919495029
AMKEPLAKI	9	Unmodified	_AMKEPLAKI_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7460021972656	2	500.79662	999.578688	-0.32862	-0.00016457	3.6683	0.0018371	3.3396	0.0016725	500.7983506629535	41.406	0.46766	41.178	40.966	41.434	-0.2278					20	11	2	0	0	0	0.024541	1	3660	3660		17.365	4.4058	1	393720			2780	10668	1646	1649	3624	3624					0.07888161610628686
AMKKNVAKV	9	Unmodified	_AMKKNVAKV_					0	0	0		nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2628173828125	2	494.802237	987.589921	0.067511	3.3405E-05	2.4923	0.0012332	2.5598	0.0012666	494.8034571385833	57.845	0.1935	57.655	57.48	57.674	-0.19018					5	4	2	0	0	0	0.024523	1	6327	6327		15.642	0	1	67108			2781	10081	1647	1650	3625	3625					0.09562983704768158
AMKPPSVYLL	10	Unmodified	_AMKPPSVYLL_					0	0	0		CON__Q1RMK2	CON__Q1RMK2	CON__Q1RMK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8153076171875	2	559.817553	1117.62055	-0.85269	-0.00047735	-2.7856	-0.0015594	-3.6383	-0.0020368	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.55353	1	10080	10080		82.241	5.4664	1	10426000		+	2782	541	1648	1651	3626	3626					0.06644717299172953
AMKRVDHKL	9	Unmodified	_AMKRVDHKL_					0	0	0		SMCO1|p.A194Qfs*15|1|0.35|ENSG00000214097|chr3:196507956-196507956|C/-|frameshift_variant;ENSG00000214097|ENST00000397537|SMCO1	SMCO1|p.A194Qfs*15|1|0.35|ENSG00000214097|chr3:196507956-196507956|C/-|frameshift_variant	SMCO1|p.A194Qfs*15|1|0.35|ENSG00000214097|chr3:196507956-196507956|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.3178100585938	2	549.316043	1096.61753	0.4694	0.00025785	2.9716	0.0016323	3.441	0.0018902	549.3175615102906	99.732	0.62275	99.597	99.249	99.871	-0.13526					38	14	4	0	0	0	0.89441	1	12370	12370		32.812	3.6424	1	405160			2783	10542	1649	1652	3627	3627					0.07308886965006423
AMKTLRKKD	9	Unmodified	_AMKTLRKKD_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3018188476562	2	545.823701	1089.63285	-0.70249	-0.00038343	-2.1593	-0.0011786	-2.8618	-0.001562	546.3237748229323	63.315	0.14397	63.064	62.976	63.12	-0.25141					5	3	2	0	0	0	0.024427	1	7355	7355		42.396	6.7778	1	99001			2784	6136	1650	1653	3628	3628					0.09161753762214175
AMLFPDGIL	9	Unmodified	_AMLFPDGIL_					0	0	0		ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.237548828125	2	488.762246	975.50994	-0.34575	-0.00016899	-3.365	-0.0016447	-3.7108	-0.0018137	488.7599257889704	35.469	0.66475	35.257	34.847	35.511	-0.21246					26	16	2	0	0	0	0.023954	1	2683	2683		52.299	29.257	1	113600			2785	9686	1651	1654	3629	3629					0.021204973109320235
AMLIAVVVFI	10	Unmodified	_AMLIAVVVFI_					0	0	0			REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7841186523438	2	538.332839	1074.65112	0.10713	5.7672E-05	3.4357	0.0018495	3.5428	0.0019072	538.3344211401903	76.959	0.29556	76.691	76.552	76.848	-0.26807					10	6	2	0	0	0	0.03519	1	9124	9124		35.201	7.3185	1	58620	+		2786	21680	1652	1655	3630	3630					0.11678495684213885
AMLKTPTST	9	Unmodified	_AMLKTPTST_					0	0	0			REV__ENSG00000170485|ENST00000335681|NPAS2	REV__ENSG00000170485|ENST00000335681|NPAS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.25433349609375	2	475.254785	948.495018	-0.36245	-0.00017226	1.659	0.00078846	1.2966	0.0006162	475.2541087182669	27.239	0.21456	27.082	26.93	27.145	-0.15664					5	4	2	0	0	0	0.024506	1	1444	1444		23.042	15.849	1	19056	+		2787	26477	1653	1656	3631	3631					0.018710054429107004
AMLPSITNV	9	Unmodified	_AMLPSITNV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2568359375	2	473.257328	944.500103	2.076	0.00098248	-1.7682	-0.00083682	0.30778	0.00014566	473.25636425152237	74.533	0.57916	74.533	74.256	74.835	0					30	13	3	0	0	0	0.10174	2	9122	9122;9134		110.12	10.745	1	1386300			2788	9860	1654	1657	3632;3633	3632					0.025633093055375866
AMLPSITNV	9	Unmodified	_AMLPSITNV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.25701904296875	2	473.257328	944.500103	0.7626	0.00036091	-0.45728	-0.00021641	0.30533	0.0001445	473.25702287315556	74.785	0.62042	74.527	74.244	74.864	-0.25887					26	14	2	0	0	0	0.03849	1	9133	9133		134.81	35.436	1	1302600			2789	9860	1654	1657	3634	3634					0.025633093055375866
AMLPSITNV	9	Unmodified	_AMLPSITNV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	473.257328	944.500103	-0.12111	-5.7316E-05	-0.37628	-0.00017808	-0.49739	-0.00023539	473.2573640440529	74.573	0.743	74.582	74.268	75.011	0.0096512	0.066468	0.00046041	NaN	134.81	42	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1155800			2790	9860	1654	1657							0.025633093055375866
AMLPSITNV	9	Unmodified	_AMLPSITNV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.257328	944.500103	0.39065	0.00018488	-0.57988	-0.00027443	-0.18923	-8.9555E-05	473.2569540397751	74.782	0.49379	74.506	74.352	74.846	-0.27573	-0.00999	0.00026769	NaN	134.81	12	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89666			2791	9860	1654	1657							0.025633093055375866
AMLPSITNV	9	Unmodified	_AMLPSITNV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.257328	944.500103	0.36257	0.00017159	0.24541	0.00011614	0.60798	0.00028773	473.25738341165186	74.614	0.32976	74.432	74.309	74.639	-0.18278	-0.084251	0.0010488	NaN	134.81	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55984			2792	9860	1654	1657							0.025633093055375866
AMLTFEKISL	10	Unmodified	_AMLTFEKISL_					0	0	0		ENST00000380324.7_1_15:63880600-63880953:+|nuORF	ENST00000380324.7_1_15:63880600-63880953:+|nuORF	ENST00000380324.7_1_15:63880600-63880953:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.843505859375	2	576.820292	1151.62603	-0.15142	-8.7341E-05	-2.7031	-0.0015592	-2.8545	-0.0016465	576.8186267796973	90.263	0.701	90.276	90.043	90.744	0.013443					35	16	3	0	0	0	0.03519	1	11359	11359		21.96	6.3181	1	350340			2793	13306	1655	1658	3635	3635					0.056283960909922826
AMLTPKLVTC	10	Unmodified	_AMLTPKLVTC_					0	0	0			REV__ENSG00000068366|ENST00000672401|ACSL4	REV__ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2816772460938	2	538.795763	1075.57697	-1.3521	-0.0007285	1.902	0.0010248	0.54993	0.0002963	538.7967688986688	52.412	0.49031	52.143	51.981	52.471	-0.26903					21	12	2	0	0	0	0.03519	1	5443	5443		45.972	16.823	1	387910	+		2794	20376	1656	1659	3636	3636					0.0422078453038921
AMLVLMALFF	10	Unmodified	_AMLVLMALFF_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.8408203125	2	578.318874	1154.6232	-0.73785	-0.00042671	3.407	0.0019703	2.6692	0.0015436	578.822325282297	89.21	1.557	89.082	88.489	90.046	-0.12775					71	36	4	0	0	0	0.03519	1	11005	11005		19.36	1.892	1	231790	+		2795	29101	1657	1660	3637	3637					0.05206849432488525
AMLVLMALFF	10	Unmodified	_AMLVLMALFF_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.318874	1154.6232	-0.80389	-0.0004649	4.0533	0.0023441	3.2494	0.0018792	578.3212147668644	89.014	1.0112	89.014	88.47	89.481	0	-0.031882	0.00088804	NaN	26.796	42	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117600	+		2796	29101	1657	1660							0.05206849432488525
AMLVLMALFF	10	Unmodified	_AMLVLMALFF_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	578.318874	1154.6232	0.28366	0.00016405	3.2564	0.0018833	3.5401	0.0020473	578.3208946764299	88.959	1.2219	88.938	88.482	89.704	-0.021645	-0.10866	-3.3644E-05	NaN	26.796	44	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99822	+		2797	29101	1657	1660							0.05206849432488525
AMLVLMALFF	10	Unmodified	_AMLVLMALFF_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	578.318874	1154.6232	0.11439	6.6156E-05	1.9048	0.0011016	2.0192	0.0011677	578.3207821447251	89.066	1.2629	89.082	88.58	89.843	0.015907	0.035808	-0.001597	NaN	26.796	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89546	+		2798	29101	1657	1660							0.05206849432488525
AMLVLMALFF	10	Unmodified	_AMLVLMALFF_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	578.318874	1154.6232	-0.69027	-0.0003992	3.4436	0.0019915	2.7533	0.0015923	578.8225460719333	89.217	1.5003	89.054	88.554	90.054	-0.1626	0.008098	0.00018279	NaN	26.796	85	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224510	+		2799	29101	1657	1660							0.05206849432488525
AMLVLMALFF	10	Unmodified	_AMLVLMALFF_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	578.318874	1154.6232	-0.20757	-0.00012004	2.5697	0.0014861	2.3622	0.0013661	578.8220313643736	89.244	1.2676	89.107	88.482	89.749	-0.13762	0.060403	-0.00082791	NaN	26.796	71	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247350	+		2800	29101	1657	1660							0.05206849432488525
AMLVVINEI	9	Unmodified	_AMLVVINEI_					0	0	0			REV__APBA1|p.G552E|1|0.4|ENSG00000107282|chr9:69456380-69456380|C/T|missense_variant	REV__APBA1|p.G552E|1|0.4|ENSG00000107282|chr9:69456380-69456380|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2904968261719	2	501.288628	1000.5627	-0.38964	-0.00019532	3.5736	0.0017914	3.184	0.0015961	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.75397	1	10774	10774		42.396	2.338	1	8504000	+		2801	19153	1658	1661	3638	3638					0.06244455373735036
AMLVVINEI	9	Unmodified	_AMLVVINEI_					0	0	0			REV__APBA1|p.G552E|1|0.4|ENSG00000107282|chr9:69456380-69456380|C/T|missense_variant	REV__APBA1|p.G552E|1|0.4|ENSG00000107282|chr9:69456380-69456380|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2901916503906	2	501.288628	1000.5627	-0.55827	-0.00027985	4.2822	0.0021466	3.7239	0.0018667	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.77768	1	10295	10295		40.778	2.9666	1	2156900	+		2802	19153	1658	1661	3639	3639					0.06244455373735036
AMMMRQLLTK	10	Unmodified	_AMMMRQLLTK_					0	0	0			REV__nc|ENSG00000080815|P49768-3|PSEN1	REV__nc|ENSG00000080815|P49768-3|PSEN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.5384216308594	3	408.220473	1221.63959	-0.14021	-5.7236E-05	-3.3929	-0.0013851	-3.5331	-0.0014423	408.2192454685745	30.697	0.46667	30.519	30.283	30.75	-0.17818					24	10	3	0	0	0	0.03519	1	1981	1981		14.694	9.2807	1	193400	+		2803	36483	1659	1662	3640	3640					0.03763607326914098
AMNARPHKV	9	Oxidation (M)	_AM(Oxidation (M))NARPHKV_		AM(1)NARPHKV		AM(53)NARPHKV	0	0	1		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.275634765625	2	520.276918	1038.53928	3.0081	0.0015651	-3.0978	-0.0016117	-0.089636	-4.6636E-05	520.2752136092346	17.126	1.5828	17.126	16.946	18.529	0					55	32	4	0	0	0	0.59099	1	131	131		53.351	9.2347	1	995110			2804	15316	1660	1663	3641	3641		518			0.02155454379794719
AMNARPHKV	9	Oxidation (M)	_AM(Oxidation (M))NARPHKV_					0	0	1		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.276918	1038.53928	1.141	0.00059364	-1.6329	-0.00084954	-0.49186	-0.0002559	520.2760266913493	17.287	0.35091	17.133	17.007	17.358	-0.15403	0.013727	0.0019398	NaN	53.351	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55908			2805	15316	1660	1663				518			0.02155454379794719
AMNARPHKV	9	Oxidation (M)	_AM(Oxidation (M))NARPHKV_					0	0	1		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.276918	1038.53928	0.053075	2.7614E-05	-0.017812	-9.2673E-06	0.035263	1.8346E-05	520.2766929543732	17.246	0.25314	17.039	16.913	17.166	-0.20669	-0.080234	0.0036203	NaN	53.351	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43969			2806	15316	1660	1663				518			0.02155454379794719
AMNARPHKV	9	Oxidation (M)	_AM(Oxidation (M))NARPHKV_					0	0	1		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.276918	1038.53928	4.9977	0.0026002	-4.9301	-0.002565	0.067599	3.517E-05	520.2741985906492	17.304	0.3019	17.053	16.928	17.23	-0.25049	-0.066326	-0.0014912	NaN	53.351	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66932			2807	15316	1660	1663				518			0.02155454379794719
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2794799804688	2	512.27946	1022.54437	1.2325	0.00063137	-1.6584	-0.00084958	-0.42595	-0.00021821	512.2785665016326	18.997	0.96494	18.997	18.724	19.689	0					43	19	4	0	0	0	0.096521	3	359	348;359;371		111.65	50.676	1	1612500			2808	15316	1660	1664	3642;3643;3644	3643					0.0339975824240355
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2794799804688	2	512.27946	1022.54437	-0.11535	-5.909E-05	-0.3217	-0.0001648	-0.43705	-0.00022389	512.2792433016496	19.195	0.78704	19.076	18.804	19.591	-0.11872					46	15	4	0	0	0	0.039744	3	367	359;367;379		133.81	53.873	1	1521200			2809	15316	1660	1664	3645;3646;3647	3646					0.0339975824240355
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.279541015625	2	512.27946	1022.54437	2.6467	0.0013559	-2.9548	-0.0015137	-0.30809	-0.00015783	512.2778545831779	19.151	0.83446	19.217	18.995	19.829	0.066195					43	16	4	0	0	0	0.022311	3	340	328;340;352		147.69	80.2	1	1108400			2810	15316	1660	1664	3648;3649;3650	3649					0.0339975824240355
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENST00000484852.1_1_3:147884522-147885023:-|nuORF;chr12:54281941-54282052|521|78.24|0.0|22.9|+|ENST00000676842|HNRNPA1,HNRNPA1;chr12:54281896-54283827|522|206.99|0.0|24.3|+|ENST00000679273|HNRNPA1,HNRNPA1;chr12:54281908-54283827|521|67.73|0.0|22.69|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281945-54282090|520|26.84|0.0|21.36|+|ENST00000550994|HNRNPA1,HNRNPA1;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|522|454.4|0.0|25.44|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENSG00000135486|ENST00000340913|HNRNPA1	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	ENST00000484852.1_1_3:147884522-147885023:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.27946	1022.54437	0.67379	0.00034517	1.7937	0.00091889	2.4675	0.0012641	512.2792876301146	19.506	0.59648	19.306	18.958	19.554	-0.2001	0.14038	0.0035298	NaN	147.69	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103920			2811	15316	1660	1664							0.0339975824240355
AMNDILAQV	9	Unmodified	_AMNDILAQV_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7516174316406	2	487.75241	973.490267	-0.21452	-0.00010463	0.028222	1.3765E-05	-0.1863	-9.0868E-05	487.75213715109004	75.336	0.81181	75.346	75.012	75.824	0.010376					43	21	3	0	0	0	0.18994	1	9153	9153		90.601	2.8466	1	1535000			2812	7600	1661	1665	3651	3651					0.0024612130016521405
AMNFHEVL	8	Unmodified	_AMNFHEVL_					0	0	0		ENSG00000237412|ENST00000617714|PRSS56	ENSG00000237412|ENST00000617714|PRSS56	ENSG00000237412|ENST00000617714|PRSS56	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.73138427734375	2	480.73402	959.453487	-0.37385	-0.00017972	-3.9247	-0.0018867	-4.2985	-0.0020664	480.7321405153963	31.237	3.3748	31.306	29.359	32.734	0.068962					202	83	4	0	0	0	0.91239	1	2090	2090		50.025	0	1	10183000			2813	10746	1662	1666	3652	3652					-0.02786130525748831
AMNPVEHPF	9	Oxidation (M)	_AM(Oxidation (M))NPVEHPF_		AM(1)NPVEHPF		AM(69)NPVEHPF	0	0	1		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2417602539062	2	529.242209	1056.46987	-1.6073	-0.00085064	0.92164	0.00048777	-0.68564	-0.00036287	529.2425341140788	43.853	1.0133	43.853	43.404	44.417	0					74	28	4	0	0	0	0.35646	2	4141	4141;4155		68.787	7.8149	1	5158500			2814	6859	1663	1667	3653;3654	3653		283			-0.056110493596634115
AMNPVEHPF	9	Oxidation (M)	_AM(Oxidation (M))NPVEHPF_		AM(1)NPVEHPF		AM(91)NPVEHPF	0	0	1		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2415771484375	2	529.242209	1056.46987	-1.2895	-0.00068246	0.63312	0.00033508	-0.65638	-0.00034738	529.2423893226284	44.02	0.89843	43.875	43.461	44.359	-0.14471					66	25	4	0	0	0	0.18915	2	4154	4144;4154		90.777	27.47	1	5001300			2815	6859	1663	1667	3655;3656	3656		283			-0.056110493596634115
AMNPVEHPF	9	Oxidation (M)	_AM(Oxidation (M))NPVEHPF_		AM(1)NPVEHPF		AM(64)NPVEHPF	0	0	1		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2420654296875	2	529.242209	1056.46987	-0.2101	-0.00011119	-0.39858	-0.00021095	-0.60868	-0.00032214	529.2418531250081	43.904	0.94566	43.94	43.564	44.509	0.0369					64	26	3	0	0	0	0.42604	2	4096	4085;4096		64.207	16.55	1	5555400			2816	6859	1663	1667	3657;3658	3658		283			-0.056110493596634115
AMNPVEHPF	9	Unmodified	_AMNPVEHPF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.2451782226562	2	521.244752	1040.47495	-0.78559	-0.00040948	0.81024	0.00042233	0.024657	1.2852E-05	521.2450059845618	50.62	1.1854	50.62	50.21	51.395	0					80	33	4	0	0	0	0.15029	3	5301	5301;5314;5327		99.375	48.04	1	7221900			2817	6859	1663	1668	3659;3660;3661	3659					-0.04366745497031843
AMNPVEHPF	9	Unmodified	_AMNPVEHPF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.2448120117188	2	521.244752	1040.47495	-0.27151	-0.00014152	0.29013	0.00015123	0.018617	9.704E-06	521.244769346094	50.8	1.1149	50.651	50.289	51.404	-0.14916					80	31	4	0	0	0	0.096521	4	5325	5303;5314;5325;5338		111.65	29.343	1	6719200			2818	6859	1663	1668	3662;3663;3664;3665	3664					-0.04366745497031843
AMNPVEHPF	9	Unmodified	_AMNPVEHPF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.2451782226562	2	521.244752	1040.47495	-0.32456	-0.00016918	0.47142	0.00024573	0.14686	7.6551E-05	521.2448735827743	50.447	1.3566	50.528	50.148	51.505	0.080994					73	38	3	0	0	0	0.096521	4	5204	5204;5215;5226;5238		111.65	50.676	1	7217700			2819	6859	1663	1668	3666;3667;3668;3669	3666					-0.04366745497031843
AMNPVEHPF	9	Unmodified	_AMNPVEHPF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2539672851562	2	521.244752	1040.47495	0.034301	1.7879E-05	0.31197	0.00016261	0.34627	0.00018049	521.2447019512421	50.719	1.3515	50.607	50.196	51.548	-0.11163					75	35	4	0	0	0	0.096521	2	5160	5160;5167		111.65	56.144	1	2127200			2820	6859	1663	1668	3670;3671	3670					-0.04366745497031843
AMNPVEHPF	9	Unmodified	_AMNPVEHPF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2490844726562	2	521.244752	1040.47495	0.4694	0.00024467	-0.19353	-0.00010088	0.27587	0.0001438	521.2445226625953	50.931	2.0603	50.655	49.588	51.648	-0.27643					94	54	3	0	0	0	0.15029	2	5188	5188;5202		99.375	49.35	1	2434600			2821	6859	1663	1668	3672;3673	3672					-0.04366745497031843
AMNPVEHPF	9	Unmodified	_AMNPVEHPF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2462768554688	2	521.244752	1040.47495	0.52708	0.00027474	-0.33247	-0.0001733	0.19461	0.00010144	521.2444292542077	50.771	1.9931	50.59	49.644	51.637	-0.18071					102	52	3	0	0	0	0.096521	2	5184	5172;5184		111.65	49.242	1	2529500			2822	6859	1663	1668	3674;3675	3675					-0.04366745497031843
AMNSAPRDQV	10	Unmodified	_AMNSAPRDQV_					0	0	0			REV__ENST00000354883.10_1_3:66271363-66271495:+|nuORF	REV__ENST00000354883.10_1_3:66271363-66271495:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3118286132812	2	544.761297	1087.50804	-1.103	-0.00060085	-0.49339	-0.00026878	-1.5963	-0.00086962	544.7609509077953	44.92	0.56567	44.82	44.554	45.12	-0.099445					23	14	2	0	0	0	0.03519	1	4196	4196		27.882	0	1	117440	+		2823	30764	1664	1669	3676	3676					-0.03221163445005004
AMRAQTPEF	9	Unmodified	_AMRAQTPEF_					0	0	0			REV__ENSG00000164308|ENST00000437043|ERAP2	REV__ENSG00000164308|ENST00000437043|ERAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2359619140625	2	525.755484	1049.49641	-0.8414	-0.00044237	-2.73	-0.0014353	-3.5714	-0.0018777	525.754148460639	25.874	0.53737	25.637	25.343	25.88	-0.23603					15	12	2	0	0	0	0.024263	1	1241	1241		51.335	14.307	1	30893	+		2824	25735	1665	1670	3677	3677					-0.026353604683208687
AMRGYGAMPHG	11	Unmodified	_AMRGYGAMPHG_					0	0	0			REV__nc|ENSG00000113448|Q08499-4|PDE4D	REV__nc|ENSG00000113448|Q08499-4|PDE4D	MSMS	OPSCC_39_ClassI_Rep-3	3	574.2628784179688	2	574.26041	1146.50627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.159	1	17.22	16.72	17.72	0.06036								0	0	0	1.5136	1	109	109		14.865	2.0532	1		+		2825	36576	1666	1671	3678	3678					-0.06112495734600998
AMRKDFFSHAW	11	Unmodified	_AMRKDFFSHAW_					0	0	0		ENSG00000172139|ENST00000305815|SLC9C1;nc|ENSG00000172139|Q4G0N8-2|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.8932189941406	3	465.892401	1394.65538	-0.32028	-0.00014922	1.7497	0.00081519	1.4295	0.00066598	465.89319375089303	30.206	1.1761	29.962	29.655	30.831	-0.24415					66	27	4	0	0	0	1.0074	1	1913	1913		35.178	0	1	2082400			2826	8244	1667	1672	3679	3679					-0.026166468401697784
AMRKDFFSHAW	11	Unmodified	_AMRKDFFSHAW_					0	0	0		ENSG00000172139|ENST00000305815|SLC9C1;nc|ENSG00000172139|Q4G0N8-2|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.8934631347656	3	465.892401	1394.65538	-0.76127	-0.00035467	2.1533	0.0010032	1.3921	0.00064856	465.89340150872135	30.072	1.2207	29.893	29.57	30.791	-0.17818					74	28	4	0	0	0	0.95317	1	1894	1894		47.228	14.188	1	2256500			2827	8244	1667	1672	3680	3680					-0.026166468401697784
AMRVDGCVY	9	Carbamidomethyl (C)	_AMRVDGC(Carbamidomethyl (C))VY_	AMRVDGC(1)VY		AMRVDGC(41)VY		0	1	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7393188476562	2	535.741519	1069.46849	-0.4135	-0.00022153	-3.8689	-0.0020727	-4.2824	-0.0022943	535.7395719325926	70.358	0.40565	70.086	69.827	70.232	-0.27185					14	9	2	0	0	0	0.78069	1	8190	8190		40.573	7.057	1	947250	+		2828	19854	1668	1673	3681	3681	252				-0.06347006720056925
AMSESILLLL	10	Unmodified	_AMSESILLLL_					0	0	0			REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3160400390625	2	545.314843	1088.61513	-0.23737	-0.00012944	3.4915	0.001904	3.2542	0.0017745	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	1.0665	1	10858	10858		37.159	0	1	3529900	+		2829	20385	1669	1674	3682	3682					0.07436993716714824
AMSILAKMGD	10	Unmodified	_AMSILAKMGD_					0	0	0		ENST00000464323.1_1_6:10410019-10419770:-|nuORF	ENST00000464323.1_1_6:10410019-10419770:-|nuORF	ENST00000464323.1_1_6:10410019-10419770:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7684936523438	2	518.76192	1035.50929	-1.2013	-0.00062316	1.6254	0.00084318	0.42412	0.00022002	519.263993924558	39.488	0.32055	39.511	39.277	39.598	0.023727					13	8	2	0	0	0	0.03519	1	3353	3353		27.047	0	1	166810			2830	14759	1670	1675	3683	3683					-0.0070466540043980785
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_		AM(1)SSKFFLV		AM(100)SSKFFLV	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2726440429688	2	523.272978	1044.5314	-1.4684	-0.0007684	0.69293	0.00036259	-0.77551	-0.00040581	523.2731633508806	62.592	0.98818	62.592	62.313	63.301	0					61	26	4	0	0	0	0.14024	4	7304	7266;7277;7290;7304		101.6	38.294	1	5496300			2831	3350	1671	1676	3684;3685;3686;3687	3687		126			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_		AM(1)SSKFFLV		AM(80)SSKFFLV	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2731323242188	2	523.272978	1044.5314	-1.3265	-0.00069411	0.37792	0.00019775	-0.94856	-0.00049636	523.2729990754835	62.796	0.91087	62.557	62.293	63.204	-0.23926					58	24	4	0	0	0	0.26966	3	7304	7278;7292;7304		79.713	24.208	1	5310900			2832	3350	1671	1676	3688;3689;3690	3690		126			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_		AM(1)SSKFFLV		AM(110)SSKFFLV	0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2723999023438	2	523.272978	1044.5314	-0.41729	-0.00021836	0.44521	0.00023297	0.027916	1.4608E-05	523.2726343068084	62.492	1.1178	62.555	62.301	63.419	0.062767					93	28	7	0	0	0	0.1158	2	7214	7201;7214		107.01	48.778	1	6073600			2833	3350	1671	1676	3691;3692	3692		126			0.01091882339642325
AMSSKFFLV	9	Oxidation (M)	_AM(Oxidation (M))SSKFFLV_					0	0	1		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.272978	1044.5314	-0.64916	-0.00033969	-0.14578	-7.6284E-05	-0.79494	-0.00041597	523.2729021310045	62.528	0.51272	62.344	61.917	62.429	-0.18386	-0.16781	-0.000696	NaN	107.01	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500040			2834	3350	1671	1676				126			0.01091882339642325
AMSSKFFLV	9	Unmodified	_AMSSKFFLV_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.275390625	2	515.275521	1028.53649	-0.46513	-0.00023967	-0.94914	-0.00048907	-1.4143	-0.00072874	515.2758953406969	68.545	1.2447	68.545	68.179	69.423	0					87	32	4	0	0	0	0.37611	1	8213	8213		67.494	10.773	1	8842800			2835	3350	1671	1677	3693	3693					0.02336186202251156
AMSSKFFLV	9	Unmodified	_AMSSKFFLV_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.27587890625	2	515.275521	1028.53649	0.13445	6.9279E-05	-1.5591	-0.00080336	-1.4246	-0.00073408	515.2755416139975	68.89	0.87802	68.598	68.251	69.129	-0.29267					69	22	4	0	0	0	0.34489	1	8243	8243		69.628	10.846	1	8948600			2836	3350	1671	1677	3694	3694					0.02336186202251156
AMSSKFFLV	9	Unmodified	_AMSSKFFLV_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2755126953125	2	515.275521	1028.53649	-0.30788	-0.00015864	-1.1287	-0.00058162	-1.4366	-0.00074026	515.7757720434078	68.596	1.3108	68.615	68.198	69.509	0.018913					86	34	4	0	0	0	0.2508	2	8147	8147;8159		82.241	21.269	1	8213800			2837	3350	1671	1677	3695;3696	3695					0.02336186202251156
AMSSKFFLV	9	Unmodified	_AMSSKFFLV_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	515.275521	1028.53649	0.355	0.00018293	-2.269	-0.0011691	-1.914	-0.00098622	515.2751305144818	68.824	1.1371	68.581	68.187	69.325	-0.24278	-0.0081566	-0.00090552	NaN	82.241	59	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1593100			2838	3350	1671	1677							0.02336186202251156
AMSSKFFLV	9	Unmodified	_AMSSKFFLV_					0	0	0		ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	ENST00000497817.1_1_3:55513315-55514913:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	515.275521	1028.53649	0.17725	9.1334E-05	-2.1907	-0.0011288	-2.0135	-0.0010375	515.2751603310174	68.802	1.1451	68.571	68.195	69.34	-0.23048	-0.01768	-0.00082487	NaN	82.241	55	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1369700			2839	3350	1671	1677							0.02336186202251156
AMSWPHGLGVV	11	Unmodified	_AMSWPHGLGVV_					0	0	0			REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.2791748046875	2	577.294776	1152.575	-0.64547	-0.00037263	0.15765	9.101E-05	-0.48783	-0.00028162	577.294860980904	40.719	2.6217	40.494	39.734	42.356	-0.225					104	69	2	0	0	0	0.024776	1	3468	3468		14.865	8.1293	1	563210	+		2840	34783	1672	1678	3697	3697					0.00481491836785608
AMTARPLP	8	Unmodified	_AMTARPLP_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.77655029296875	2	428.739105	855.463658	-0.57244	-0.00024543	0.45653	0.00019573	-0.11591	-4.9695E-05	428.7393380893658	33.341	0.75362	33.175	32.958	33.711	-0.16565					23	18	2	0	0	0	0.027866	1	2358	2358		25.45	13.243	1	206270	+		2841	25221	1673	1679	3698	3698					0.030144771994969233
AMTARPLP	8	Unmodified	_AMTARPLP_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	428.739105	855.463658	-0.66898	-0.00028682	7.5164	0.0032226	6.8474	0.0029357	428.7397766367005	33.074	0.62065	33.08	32.701	33.321	0.0066261	-0.081756	0.0060688	NaN	31.955	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92801	+		2842	25221	1673	1679							0.030144771994969233
AMTARPLP	8	Unmodified	_AMTARPLP_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	428.739105	855.463658	0.20942	8.9785E-05	0.090405	3.876E-05	0.29982	0.00012854	428.7389842246629	33.415	0.76917	33.184	32.67	33.439	-0.23107	0.022191	-0.00029876	NaN	31.955	20	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125560	+		2843	25221	1673	1679							0.030144771994969233
AMTARPLP	8	Unmodified	_AMTARPLP_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	428.739105	855.463658	0.02259	9.6853E-06	0.1154	4.9475E-05	0.13799	5.916E-05	428.7391281781117	33.409	0.7001	33.208	32.855	33.555	-0.20019	0.046393	-0.00027733	NaN	31.955	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181320	+		2844	25221	1673	1679							0.030144771994969233
AMTDVLRGIL	10	Unmodified	_AMTDVLRGIL_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-4|MED23	REV__nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3158569335938	2	544.810259	1087.60597	-0.19663	-0.00010713	-2.908	-0.0015843	-3.1046	-0.0016914	544.8083525781406	85.825	0.72581	85.688	85.41	86.136	-0.13753					26	16	3	0	0	0	0.03519	1	10448	10448		24.519	0	1	308840	+		2845	21987	1674	1680	3699	3699					0.06566645151019657
AMTKGGKL	8	Unmodified	_AMTKGGKL_					0	0	0			REV__ENST00000561918.1_1_16:57512562-57513515:-|nuORF	REV__ENST00000561918.1_1_16:57512562-57513515:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.53607177734375	2	403.233656	804.452759	0.49102	0.000198	-1.6978	-0.00068461	-1.2068	-0.00048661	403.2327746953273	35.336	0.89986	35.123	34.685	35.584	-0.21246					27	22	2	0	0	0	0.027866	1	2617	2617		24.203	7.7296	1	97173	+		2846	35185	1675	1681	3700	3700					0.042710748252034136
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2522888183594	2	452.252046	902.489538	0.3999	0.00018086	-0.46853	-0.00021189	-0.068624	-3.1035E-05	452.251816732674	74.893	1.26	74.893	74.256	75.516	0					48	31	2	0	0	0	0.015925	4	9178	9167;9178;9191;9206		157.21	23.396	1	5862300			2847	1074	1676	1682	3701;3702;3703;3704	3702					0.03439326651130159
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.252197265625	2	452.252046	902.489538	0.10855	4.9092E-05	-0.20241	-9.1541E-05	-0.093861	-4.2449E-05	452.2519360742684	75.142	0.92818	74.898	74.549	75.477	-0.24455					41	23	2	0	0	0	0.015925	4	9173	9163;9173;9185;9198		157.21	23.396	1	5661100			2848	1074	1676	1682	3705;3706;3707;3708	3706					0.03439326651130159
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2524719238281	2	452.252046	902.489538	-0.0051809	-2.3431E-06	-0.09205	-4.163E-05	-0.09723	-4.3973E-05	452.25200102854944	74.941	0.86217	74.951	74.607	75.47	0.010376					38	21	2	0	0	0	0.039744	1	9135	9135		133.81	34.438	1	5823500			2849	1074	1676	1682	3709	3709					0.03439326651130159
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.2518615722656	2	452.252046	902.489538	0.36222	0.00016382	-0.39257	-0.00017754	-0.03035	-1.3726E-05	452.2517169381468	75.147	0.98578	74.871	74.396	75.381	-0.27573					46	23	3	0	0	0	0.06122	2	8867	8867;8877		124.59	3.9733	1	1714600			2850	1074	1676	1682	3710;3711	3710					0.03439326651130159
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2521667480469	2	452.252046	902.489538	-0.16832	-7.6121E-05	0.23279	0.00010528	0.064473	2.9158E-05	452.2519952197231	75.143	0.90692	74.88	74.446	75.353	-0.26326					48	21	4	0	0	0	0.028071	2	8895	8882;8895		143.11	22.486	1	1863400			2851	1074	1676	1682	3712;3713	3713					0.03439326651130159
AMTQLLAGV	9	Unmodified	_AMTQLLAGV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2518615722656	2	452.252046	902.489538	0.3524	0.00015938	-0.50542	-0.00022858	-0.15301	-6.92E-05	452.25166311555284	74.973	0.71293	74.791	74.434	75.146	-0.18278					43	16	4	0	0	0	0.082191	2	8848	8848;8860		116.9	8.8161	1	1386500			2852	1074	1676	1682	3714;3715	3714					0.03439326651130159
AMVIFESI	8	Unmodified	_AMVIFESI_					0	0	0			REV__ENSG00000100138|ENST00000401959|SNU13	REV__ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2388610839844	2	455.241147	908.46774	-0.20844	-9.4891E-05	-4.0379	-0.0018382	-4.2463	-0.0019331	455.2391809994506	17.746	0.39935	17.54	17.364	17.764	-0.20669					19	7	4	0	0	0	1.0472	1	215	215		29.842	1.5873	1	158460	+		2853	21053	1677	1683	3716	3716					0.00984521902535107
AMVNYIKKTY	10	Unmodified	_AMVNYIKKTY_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.82958984375	2	615.831191	1229.64783	-0.40431	-0.00024899	-2.3535	-0.0014494	-2.7578	-0.0016984	615.8296077840357	98.635	1.3876	98.635	98.317	99.704	0					78	31	3	0	0	0	0.941	1	12588	12588		51.335	4.8787	1	905310			2854	5421	1678	1684	3717	3717					0.04219200839543191
AMVPPLSNK	9	Unmodified	_AMVPPLSNK_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2817077636719	2	478.76532	955.516088	0.19924	9.5391E-05	-0.040218	-1.9255E-05	0.15903	7.6137E-05	478.7636117976977	50.458	0.201	50.458	50.376	50.577	0					8	5	2	0	0	0	0.024477	1	5289	5289		27.882	8.5223	1	62232	+		2855	23842	1679	1685	3718	3718					0.036550155424492914
AMVQVTVSN	9	Unmodified	_AMVQVTVSN_					0	0	0			REV__nc|ENSG00000131061|Q9BYN7-2|ZNF341	REV__nc|ENSG00000131061|Q9BYN7-2|ZNF341	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.2654724121094	2	474.744585	947.474617	0.384	0.0001823	0.016755	7.9544E-06	0.40076	0.00019026	474.74433236328883	42.922	1.7546	42.782	42.413	44.168	-0.13929					83	48	4	0	0	0	0.024021	1	4193	4193		49.442	0	1	1340100	+		2856	23186	1680	1686	3719	3719					-0.001221652168737819
AMVRRVANA	9	Unmodified	_AMVRRVANA_					0	0	0			REV__nc|ENSG00000130779|P30622-2|CLIP1	REV__nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7791442871094	2	494.27946	986.544368	-0.83999	-0.00041519	-2.6032	-0.0012867	-3.4432	-0.0017019	494.2770968737128	57.222	0.61794	57.054	56.751	57.369	-0.1672					59	16	5	0	0	0	0.024205	1	6284	6284		35.618	0	1	3892500	+		2857	23156	1681	1687	3720	3720					0.0505575824238349
AMVWVCWIW	9	Unmodified	_AMVWVCWIW_					0	0	0			REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	REV__nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.7987670898438	2	597.285366	1192.55618	-0.17754	-0.00010604	-1.5539	-0.00092811	-1.7314	-0.0010341	597.2845462523154	60.246	0.69398	60.049	59.651	60.345	-0.19742					30	17	3	0	0	0	0.024541	1	6734	6734		21.702	4.9849	1	286300	+		2858	35342	1682	1688	3721	3721					-0.032397610586485825
AMYLLVKI	8	Unmodified	_AMYLLVKI_					0	0	0			REV__nc|ENSG00000162298|Q86TM6-2|SYVN1	REV__nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.7922668457031	2	475.790807	949.56706	0.40274	0.00019162	2.8687	0.0013649	3.2714	0.0015565	475.79217954765176	50.1	1.3367	50.1	49.694	51.03	0					108	38	5	0	0	0	0.82104	1	5193	5193		57.453	1.9484	1	35171000	+		2859	25425	1683	1689	3722	3722					0.09025964587306134
ANANAPNCTTL	11	Unmodified	_ANANAPNCTTL_					0	0	0			REV__nc|ENSG00000165309|Q5W041-3|ARMC3	REV__nc|ENSG00000165309|Q5W041-3|ARMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2752075195312	2	545.253305	1088.49206	-0.32961	-0.00017972	-3.0666	-0.0016721	-3.3962	-0.0018518	545.2517371295696	77.692	0.49854	77.482	77.206	77.705	-0.21087					16	11	2	0	0	0	0.024643	1	9597	9597		65.465	16.024	1	223350	+		2860	25872	1684	1690	3723	3723					-0.04864869681887285
ANATGGRALAL	11	Unmodified	_ANATGGRALAL_					0	0	0		ENSG00000164530|ENST00000373674|PI16	ENSG00000164530|ENST00000373674|PI16	ENSG00000164530|ENST00000373674|PI16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.29840087890625	2	507.788173	1013.56179	-0.68613	-0.00034841	4.3313	0.0021994	3.6452	0.001851	507.7900670983646	26.762	0.60212	26.526	26.232	26.834	-0.23603					25	14	3	0	0	0	0.024727	1	1448	1448		18.262	0	1	361300			2861	7289	1685	1691	3724	3724					0.055553770490291754
ANAVRIRA	8	Unmodified	_ANAVRIRA_					0	0	0		ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B	ENST00000472645.1_1_X:48751014-48754386:-|nuORF	ENST00000472645.1_1_X:48751014-48754386:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2187194824219	2	435.767043	869.519533	-0.88373	-0.0003851	-1.0944	-0.00047691	-1.9781	-0.00086201	435.76655146460337	30.394	0.25012	30.394	30.258	30.508	0					7	5	2	0	0	0	0.027866	1	1958	1958		18.324	0	1	29918			2862	4212	1686	1692	3725	3725					0.07955446431321889
ANCRGTGTEEH	11	Unmodified	_ANCRGTGTEEH_					0	0	0		ENST00000489548.1_1_6:13272670-13278506:+|nuORF	ENST00000489548.1_1_6:13272670-13278506:+|nuORF	ENST00000489548.1_1_6:13272670-13278506:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.231201171875	2	587.748918	1173.48328	-1.3192	-0.00077535	-2.1997	-0.0012929	-3.5189	-0.0020682	587.7476859142593	48.783	0.36868	48.682	48.434	48.803	-0.1008					13	9	2	0	0	0	0.024812	1	4874	4874		67.494	16.158	1	92644			2863	15414	1687	1693	3726	3726					-0.09651843318351894
ANDERCIL	8	Unmodified	_ANDERCIL_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.262939453125	2	467.226559	932.438566	0.72863	0.00034044	-0.43695	-0.00020416	0.29168	0.00013628	467.22766185008055	50.44	0.23203	50.521	50.344	50.576	0.08099					9	6	2	0	0	0	0.027866	1	5218	5218		25.45	0	1	142330	+		2864	23401	1688	1694	3727	3727					-0.030356223937360483
ANDGYEFR	8	Unmodified	_ANDGYEFR_					0	0	0			REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2156677246094	2	486.214506	970.414459	0.2839	0.00013804	-0.52177	-0.00025369	-0.23787	-0.00011565	486.21447223164955	97.845	3.8348	97.856	95.908	99.743	0.010231					188	88	3	0	0	0	0.93437	1	12421	12421		47.657	3.5405	1	309580	+		2865	32301	1689	1695	3728	3728					-0.07193139555749894
ANDNQDLLF	9	Unmodified	_ANDNQDLLF_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2679443359375	2	525.248546	1048.48254	-1.0453	-0.00054903	-0.33607	-0.00017652	-1.3814	-0.00072556	525.2485135188282	44.02	0.49158	43.776	43.412	43.904	-0.2444					22	12	2	0	0	0	0.024418	1	4018	4018		30.318	7.2752	1	508270	+		2866	28647	1690	1696	3729	3729					-0.03976314695773908
ANEPLVIEFD	10	Unmodified	_ANEPLVIEFD_					0	0	0			REV__ENSG00000096401|ENST00000371477|CDC5L	REV__ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.7860717773438	2	573.787504	1145.56045	0.92398	0.00053017	-4.4823	-0.0025719	-3.5584	-0.0020417	573.7848207369756	70.816	0.98943	70.524	70.2	71.189	-0.29291					59	25	3	0	0	0	0.74632	1	8541	8541		64.207	4.089	1	2618500	+		2867	20985	1691	1697	3730	3730					-0.006503018303874342
ANEPLVIEFD	10	Unmodified	_ANEPLVIEFD_					0	0	0			REV__ENSG00000096401|ENST00000371477|CDC5L	REV__ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.78564453125	2	573.787504	1145.56045	-0.62207	-0.00035694	-2.7804	-0.0015954	-3.4025	-0.0019523	573.7857492201204	70.452	1.039	70.464	70.202	71.24	0.012421					49	26	3	0	0	0	0.64538	1	8451	8451		71.877	10.906	1	3020800	+		2868	20985	1691	1697	3731	3731					-0.006503018303874342
ANFDPLGI	8	Unmodified	_ANFDPLGI_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.7197265625	2	423.721436	845.428318	-0.98727	-0.00041833	-3.1359	-0.0013287	-4.1232	-0.0017471	423.71999093653716	39.923	0.81112	39.81	39.467	40.278	-0.11222					57	21	4	0	0	0	0.46709	1	3465	3465		88.643	0.46593	1	2571200	+		2869	26063	1692	1698	3732	3732					-0.0005786205666709066
ANGAAAARRR	10	Unmodified	_ANGAAAARRR_					0	0	0			REV__ENST00000334306.3_1_4:77818266-77818710:-|nuORF	REV__ENST00000334306.3_1_4:77818266-77818710:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2722473144531	2	507.289205	1012.56386	-0.67543	-0.00034264	-2.0687	-0.0010494	-2.7442	-0.0013921	507.78778505922236	24.185	0.69398	24.185	23.78	24.474	0					23	15	3	0	0	0	0.03519	1	1068	1068		52.937	2.9122	1	63804	+		2870	30515	1693	1699	3733	3733					0.05807850577502904
ANGALKVSVW	10	Unmodified	_ANGALKVSVW_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8169555664062	2	522.795466	1043.57638	-1.1122	-0.00058143	-0.31748	-0.00016598	-1.4296	-0.00074741	522.7952396818383	65.406	0.68211	65.133	64.748	65.43	-0.27282					57	18	5	0	0	0	0.03519	1	7658	7658		39.253	18.306	1	1304300			2871	2279	1694	1700	3734	3734					0.056334491971938405
ANGEPRPI	8	Unmodified	_ANGEPRPI_					0	0	0			REV__ENSG00000071205|ENST00000336498|ARHGAP10	REV__ENSG00000071205|ENST00000336498|ARHGAP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2662658691406	2	427.229959	852.445365	0.040194	1.7172E-05	-0.84004	-0.00035889	-0.79985	-0.00034172	427.22993765456954	42.502	0.14492	42.502	42.424	42.569	0					5	3	2	0	0	0	0.027866	1	3907	3907		38.806	3.6054	1	31413	+		2872	20447	1695	1701	3735	3735					0.013240585491416823
ANGGHLDVV	9	Unmodified	_ANGGHLDVV_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2276306152344	2	441.227417	880.44028	-0.43207	-0.00019064	0.50054	0.00022085	0.068465	3.0209E-05	441.2275742708264	34.766	1.0289	34.744	34.357	35.386	-0.021763					82	26	5	0	0	0	0.25032	1	2624	2624		82.305	10.428	1	4738400			2873	4610	1696	1702	3736	3736					-0.004722453134831994
ANGGVMDPLI	10	Unmodified	_ANGGVMDPLI_					0	0	0			REV__ENSG00000164976|ENST00000297625|MYORG	REV__ENSG00000164976|ENST00000297625|MYORG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.78570556640625	2	493.75241	985.490267	-0.225	-0.00011109	-2.4707	-0.0012199	-2.6957	-0.001331	493.75093307844867	77.381	0.97038	77.22	77.024	77.994	-0.16196					39	22	2	0	0	0	0.03519	1	9286	9286		35.618	16.515	1	179330	+		2874	25828	1697	1703	3737	3737					-0.0030587869983946803
ANGLYYVQ	8	Unmodified	_ANGLYYVQ_					0	0	0			REV__APBB1|p.V551A|1|0.04|ENSG00000166313|chr11:6401009-6401009|A/G|missense_variant	REV__APBB1|p.V551A|1|0.04|ENSG00000166313|chr11:6401009-6401009|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2789611816406	2	464.232168	926.449782	0.054196	2.516E-05	-0.67783	-0.00031467	-0.62363	-0.00028951	464.23187922898956	51.612	0.51395	51.612	51.323	51.836	0					23	14	3	0	0	0	0.027866	1	5515	5515		26.796	0	1	228730	+		2875	19154	1698	1704	3738	3738					-0.016384770279501026
ANGPGCGRGP	10	Unmodified	_ANGPGCGRGP_					0	0	0			REV__ENST00000326925.10_1_3:49059255-49059537:+|nuORF	REV__ENST00000326925.10_1_3:49059255-49059537:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.25225830078125	2	443.203418	884.392284	-0.15381	-6.8168E-05	-1.1229	-0.00049765	-1.2767	-0.00056582	443.2023858873496	45.417	0.27864	45.164	44.944	45.223	-0.25252					10	7	2	0	0	0	0.03519	1	4282	4282		35.618	15.136	1	94490	+		2876	30408	1699	1705	3739	3739					-0.05453642505165135
ANGQLFILGI	10	Unmodified	_ANGQLFILGI_					0	0	0			REV__nc|ENSG00000008283|P49447-2|CYB561	REV__nc|ENSG00000008283|P49447-2|CYB561	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3036499023438	2	523.305667	1044.59678	-1.4035	-0.00073446	-2.3027	-0.001205	-3.7062	-0.0019395	523.3042416175249	90.079	1.2388	90.079	89.731	90.97	0					76	29	4	0	0	0	1.0781	1	11392	11392		35.618	1.6967	1	1135000	+		2877	19637	1700	1706	3740	3740					0.0762661985700106
ANGQVICSLT	10	Unmodified	_ANGQVICSLT_					0	0	0		nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7979431152344	2	503.255317	1004.49608	0.14222	7.1572E-05	-3.6088	-0.0018162	-3.4666	-0.0017446	503.2533901922173	42.517	0.67645	42.517	42.255	42.932	0					32	18	2	0	0	0	0.03519	1	3933	3933		35.152	0	1	1845400			2878	10855	1701	1707	3741	3741					-0.005987801881929045
ANGSPASLPL	10	Unmodified	_ANGSPASLPL_					0	0	0			REV__ENSG00000137507|ENST00000260061|LRRC32	REV__ENSG00000137507|ENST00000260061|LRRC32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.8100891113281	2	463.750724	925.486896	-0.50691	-0.00023508	0.76762	0.00035599	0.26071	0.00012091	463.75097809837865	38.929	0.57464	38.831	38.552	39.127	-0.098755					18	15	2	0	0	0	0.03519	1	3281	3281		35.152	7.2698	1	124100	+		2879	23764	1702	1708	3742	3742					0.021171945178025453
ANGVNDFNVK	10	Unmodified	_ANGVNDFNVK_					0	0	0			REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2947998046875	2	539.269813	1076.52507	-0.97928	-0.0005281	-1.6056	-0.00086585	-2.5849	-0.0013939	539.2689457787932	80.959	0.15638	80.959	80.861	81.017	0					5	3	2	0	0	0	0.03519	1	10083	10083		41.427	16.907	1	52994	+		2880	26251	1703	1709	3743	3743					-0.010129195675290248
ANGYLQPE	8	Unmodified	_ANGYLQPE_					0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2251892089844	2	446.213975	890.413397	0.0090493	4.0379E-06	-0.23762	-0.00010603	-0.22858	-0.00010199	446.21541522121527	30.218	0.17268	30.069	29.967	30.14	-0.14952					5	3	2	0	0	0	0.027866	1	1893	1893		5.9211	0	1	19431	+		2881	25090	1704	1710	3744	3744					-0.036193539246710316
ANHRTGVSFT	10	Unmodified	_ANHRTGVSFT_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.2752685546875	2	545.275429	1088.53631	-0.48422	-0.00026403	-1.6454	-0.00089717	-2.1296	-0.0011612	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.50517	3	9590	9554;9590;9614		87.696	10.379	1	63206000			2882	9130	1705	1711	3745;3746;3747	3746					-0.004420974733875482
ANHRTGVSFT	10	Unmodified	_ANHRTGVSFT_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.275146484375	2	545.275429	1088.53631	-0.30268	-0.00016504	-1.8598	-0.0010141	-2.1624	-0.0011791	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.77808	1	9585	9585		62.107	1.9892	1	57394000			2883	9130	1705	1711	3748	3748					-0.004420974733875482
ANHRTGVSFT	10	Unmodified	_ANHRTGVSFT_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.275390625	2	545.275429	1088.53631	-0.96677	-0.00052716	-0.98156	-0.00053522	-1.9483	-0.0010624	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.57594	4	9478	9478;9490;9502;9526		79.713	10.085	1	52905000			2884	9130	1705	1711	3749;3750;3751;3752	3749					-0.004420974733875482
ANHVKPRVVAS	11	Unmodified	_ANHVKPRVVAS_					0	0	0			REV__GAPVD1|p.Y847N|1|0.53|ENSG00000165219|chr9:125337253-125337253|T/A|missense_variant	REV__GAPVD1|p.Y847N|1|0.53|ENSG00000165219|chr9:125337253-125337253|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3428955078125	2	589.343646	1176.67274	0.82715	0.00048747	-1.7486	-0.0010306	-0.9215	-0.00054308	589.3423171920064	103.68	0.66261	103.68	103.44	104.11	-0.0032196					38	15	3	0	0	0	1.0344	1	13242	13242		29.17	5.6474	1	579690	+		2885	36062	1706	1712	3753	3753					0.09147016757151505
ANIAILNNNL	10	Unmodified	_ANIAILNNNL_					0	0	0		ENST00000479107.1_1_6:33037343-33041347:-|nuORF;ENSG00000231389|ENST00000419277|HLA-DPA1	ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENST00000479107.1_1_6:33037343-33041347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7566528320312	2	535.303655	1068.59276	-0.019938	-1.0673E-05	-2.8413	-0.0015209	-2.8612	-0.0015316	535.3022471680858	76.732	0.46868	76.464	76.338	76.807	-0.26806					11	10	2	0	0	0	0.03519	1	9088	9088		49.442	0	1	59910			2886	10697	1707	1713	3754	3754					0.061205303632732466
ANIFTKQRR	9	Unmodified	_ANIFTKQRR_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.329833984375	2	567.330539	1132.64652	0.053871	3.0563E-05	-0.83373	-0.000473	-0.77986	-0.00044244	567.3299406004519	88.124	1.3605	87.986	87.038	88.398	-0.13744					93	32	4	0	0	0	1.062	1	10776	10776		7.1934	0	1	1828400			2887	1217	1708	1714	3755	3755					0.08550747585650242
ANINGLRFLQ	10	Unmodified	_ANINGLRFLQ_					0	0	0			REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.3253784179688	2	573.324922	1144.63529	0.13955	8.0007E-05	-1.7556	-0.0010065	-1.6161	-0.00092654	573.3238622701145	107.09	0.58153	107.09	106.86	107.44	-0.003479					29	18	2	0	0	0	1.0992	1	13721	13721		32.812	7.2384	1	191700	+		2888	28283	1709	1715	3756	3756					0.06875925491522139
ANIRAELD	8	Unmodified	_ANIRAELD_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26910400390625	2	451.240524	900.466495	-0.51274	-0.00023137	0.4666	0.00021055	-0.046141	-2.0821E-05	451.2407516353793	38.367	0.44777	38.285	38.083	38.531	-0.082512					15	11	2	0	0	0	0.027866	1	3231	3231		53.351	19.179	1	80663	+		2889	21011	1710	1716	3757	3757					0.012280238579933211
ANIRGKYLP	9	Unmodified	_ANIRGKYLP_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2984008789062	2	516.303458	1030.59236	-0.85743	-0.0004427	-0.44117	-0.00022778	-1.2986	-0.00067047	516.30329261647	38.269	0.7312	38.187	37.95	38.682	-0.082516					44	19	4	0	0	0	0.024436	1	3243	3243		47.916	7.343	1	870040	+		2890	19208	1711	1717	3758	3758					0.07829155434069435
ANIRGKYLP	9	Unmodified	_ANIRGKYLP_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.303458	1030.59236	-1.2948	-0.00066851	0.68574	0.00035405	-0.60905	-0.00031445	516.3036901507253	38.333	0.65016	38.333	38.071	38.721	0	0.073267	0.00037302	NaN	30.504	31	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1015000	+		2891	19208	1711	1717							0.07829155434069435
ANKAKYTAF	9	Unmodified	_ANKAKYTAF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2722473144531	2	507.274367	1012.53418	-0.70333	-0.00035678	-3.7235	-0.0018888	-4.4268	-0.0022456	507.2724426666319	24.451	0.96857	24.451	24.166	25.135	0					53	21	4	0	0	0	0.23085	1	1068	1068		84.916	5.2029	1	2079400	+		2892	28328	1712	1718	3759	3759					0.028414737887942465
ANKAKYTAF	9	Unmodified	_ANKAKYTAF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2723083496094	2	507.274367	1012.53418	-1.2409	-0.0006295	-3.1233	-0.0015844	-4.3643	-0.0022139	507.27272298393655	24.467	1.3252	24.42	24.177	25.502	-0.047148					61	30	4	0	0	0	0.16468	1	1060	1060		96.19	5.8206	1	1905700	+		2893	28328	1712	1718	3760	3760					0.028414737887942465
ANKFFVLMT	9	Unmodified	_ANKFFVLMT_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2706909179688	2	535.788795	1069.56304	-0.70184	-0.00037604	-2.2772	-0.0012201	-2.979	-0.0015961	535.7879797807299	52.528	0.32319	52.528	52.311	52.634	0					11	7	2	0	0	0	0.024427	1	5612	5612		51.335	19.381	1	31605	+		2894	21453	1713	1719	3761	3761					0.031038750935977077
ANKTSCRSL	9	Unmodified	_ANKTSCRSL_					0	0	0		ENST00000500914.6_1_4:174090049-174090625:-|nuORF	ENST00000500914.6_1_4:174090049-174090625:-|nuORF	ENST00000500914.6_1_4:174090049-174090625:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.8121032714844	2	490.253108	978.491664	-0.10659	-5.2254E-05	-0.62109	-0.00030449	-0.72767	-0.00035674	490.25255933276316	25.8	0.28441	25.63	25.413	25.698	-0.17078					9	6	2	0	0	0	0.024495	1	1234	1234		19.997	9.1312	1	75040			2895	15652	1714	1720	3762	3762					0.0015575538891425822
ANLGSAPGQL	10	Unmodified	_ANLGSAPGQL_					0	0	0			REV__ENSG00000069011|ENST00000265340|PITX1	REV__ENSG00000069011|ENST00000265340|PITX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.25054931640625	2	464.248349	926.482145	-0.57574	-0.00026729	4.2785	0.0019863	3.7028	0.001719	464.2503925053204	47.929	1.9482	47.929	47.56	49.508	0					193	56	6	0	0	0	0.59716	1	4905	4905		77.318	0.54344	1	137570000	+		2896	20394	1715	1721	3763	3763					0.01596310375032317
ANLKYLQEA	9	Unmodified	_ANLKYLQEA_					0	0	0			REV__ENSG00000142733|ENST00000357582|MAP3K6	REV__ENSG00000142733|ENST00000357582|MAP3K6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.77685546875	2	525.284931	1048.55531	-0.97967	-0.00051461	-1.7049	-0.00089558	-2.6846	-0.0014102	525.7871343432848	49.012	0.79858	49.087	48.63	49.428	0.074196					44	21	4	0	0	0	0.024427	1	5004	5004		42.396	0	1	432870	+		2897	24181	1716	1722	3764	3764					0.032974390976505674
ANLQFASLI	9	Unmodified	_ANLQFASLI_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.77734375	2	488.776742	975.538931	-0.24308	-0.00011881	0.62734	0.00030663	0.38426	0.00018782	488.77687860213143	61.501	0.72087	61.572	60.985	61.706	0.071125					40	18	3	0	0	0	0.29158	1	7035	7035		76.774	0	1	3511600			2898	5156	1717	1723	3765	3765					0.05018357931567152
ANLQHLLKQ	9	Unmodified	_ANLQHLLKQ_					0	0	0			REV__ENSG00000113328|ENST00000340828|CCNG1	REV__ENSG00000113328|ENST00000340828|CCNG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7843017578125	2	532.81419	1063.61383	-0.7882	-0.00041997	3.4023	0.0018128	2.6141	0.0013928	532.8141413457596	56.857	0.13881	56.693	56.606	56.745	-0.16431					5	3	2	0	0	0	0.024405	1	6326	6326		35.618	8.8222	1	56552	+		2899	22061	1718	1724	3766	3766					0.08456540462793782
ANLRPSTAM	9	Unmodified	_ANLRPSTAM_					0	0	0			REV__ENST00000534045.5_3_15:101460451-101464790:+|nuORF	REV__ENST00000534045.5_3_15:101460451-101464790:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7508239746094	2	480.750201	959.48585	-0.41903	-0.00020145	0.11825	5.6848E-05	-0.30078	-0.0001446	480.7502303488981	32.86	4.2442	32.867	31.252	35.496	0.0066223					283	110	4	0	0	0	0.70156	1	2219	2219		45.972	1.8554	1	7899400	+		2900	34626	1719	1725	3767	3767					0.004486568772449573
ANLVSKKYIVF	11	Unmodified	_ANLVSKKYIVF_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.385009765625	2	641.381906	1280.74926	0.90452	0.00058014	3.5665	0.0022875	4.471	0.0028676	641.3840517517907	101.3	0.7739	101.31	101.05	101.82	0.0090332					48	17	4	0	0	0	1.0392	1	12938	12938		28.081	2.0181	1	914740	+		2901	23430	1720	1726	3768	3768					0.12011395533727409
ANPKAWAPVI	10	Unmodified	_ANPKAWAPVI_					0	0	0		INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5;EML3-INTS5|1|fusion	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8035278320312	2	533.805834	1065.59712	-1.0778	-0.00057535	0.096564	5.1547E-05	-0.98126	-0.0005238	533.8059632694876	44.898	1.1267	44.898	44.519	45.646	0					122	32	5	0	0	0	0.91051	2	4372	4372;4385		53.351	5.6941	1	45576000			2902	706	1721	1727	3769;3770	3769					0.06694039576836985
ANPKAWAPVI	10	Unmodified	_ANPKAWAPVI_					0	0	0		INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5;EML3-INTS5|1|fusion	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.80517578125	2	533.805834	1065.59712	-1.1538	-0.00061591	0.22134	0.00011815	-0.93247	-0.00049776	533.8060234938253	45.067	1.1268	44.919	44.523	45.649	-0.1488					123	32	5	0	0	0	0.75995	2	4327	4327;4339		63.306	2.016	1	51243000			2903	706	1721	1727	3771;3772	3771					0.06694039576836985
ANPKAWAPVI	10	Unmodified	_ANPKAWAPVI_					0	0	0		INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant;ENSG00000185085|ENST00000330574|INTS5;EML3-INTS5|1|fusion	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	INTS5|p.A801Hfs*4|1|0.25|ENSG00000185085|chr11:62647679-62647679|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8052978515625	2	533.805834	1065.59712	-0.62298	-0.00033255	-0.37529	-0.00020033	-0.99827	-0.00053288	533.80569556097	44.942	0.99356	44.986	44.654	45.647	0.043877					116	28	5	0	0	0	0.75995	3	4282	4247;4282;4320		63.306	9.9548	1	50938000			2904	706	1721	1727	3773;3774;3775	3774					0.06694039576836985
ANPNLNSKVVL	11	Unmodified	_ANPNLNSKVVL_					0	0	0			REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF	REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.8377685546875	2	584.837862	1167.66117	-1.6075	-0.00094015	1.0139	0.00059297	-0.59364	-0.00034718	584.8384827619993	52.92	0.87505	52.92	52.634	53.509	0					75	23	5	0	0	0	0.79111	1	5680	5680		58.23	3.5076	1	7466100	+		2905	22556	1722	1728	3776	3776					0.08404774943142002
ANPRKPVE	8	Unmodified	_ANPRKPVE_					0	0	0		ENSG00000213023|ENST00000600079|SYT3;ENST00000595117.1_1_19:51125949-51129280:-|nuORF	ENSG00000213023|ENST00000600079|SYT3	ENSG00000213023|ENST00000600079|SYT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.78790283203125	2	455.758884	909.503215	0.60648	0.00027641	0.36922	0.00016828	0.9757	0.00044468	455.7587844530799	20.733	0.24625	20.538	20.385	20.632	-0.19577					6	4	2	0	0	0	0.027866	1	571	571		25.45	1.2474	1	7109.5			2906	10487	1723	1729	3777	3777					0.04484320474557535
ANPRKPVE	8	Unmodified	_ANPRKPVE_					0	0	0		ENSG00000213023|ENST00000600079|SYT3;ENST00000595117.1_1_19:51125949-51129280:-|nuORF	ENSG00000213023|ENST00000600079|SYT3	ENSG00000213023|ENST00000600079|SYT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	455.758884	909.503215	-0.43705	-0.00019919	0.49539	0.00022578	0.058339	2.6589E-05	455.7589760346591	20.363	1.015	20.363	19.689	20.704	0	-0.10758	-1.2696E-05	NaN	25.45	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72406			2907	10487	1723	1729							0.04484320474557535
ANPRKPVE	8	Unmodified	_ANPRKPVE_					0	0	0		ENSG00000213023|ENST00000600079|SYT3;ENST00000595117.1_1_19:51125949-51129280:-|nuORF	ENSG00000213023|ENST00000600079|SYT3	ENSG00000213023|ENST00000600079|SYT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	455.758884	909.503215	-0.28352	-0.00012922	0.56195	0.00025612	0.27843	0.0001269	455.75904519185025	20.616	1.0144	20.511	19.932	20.946	-0.10477	0.040408	4.7975E-05	NaN	25.45	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89321			2908	10487	1723	1729							0.04484320474557535
ANQVFLGF	8	Unmodified	_ANQVFLGF_					0	0	0		VMP1-RPS6KB1|1|fusion;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1	VMP1-RPS6KB1|1|fusion	VMP1-RPS6KB1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.7615051269531	2	448.237253	894.459953	-0.50799	-0.0002277	-4.4225	-0.0019823	-4.9304	-0.00221	448.23514975738817	32.893	0.49558	32.893	32.679	33.174	0					20	12	2	0	0	0	0.027866	1	2340	2340		20.482	0	1	142790			2909	38144	1724	1730	3778	3778					0.00850130697278928
ANRKEMLF	8	Unmodified	_ANRKEMLF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7669372558594	2	504.768394	1007.52224	-0.17127	-8.645E-05	-3.9123	-0.0019748	-4.0836	-0.0020613	504.7664533006264	66.203	1.5138	65.962	64.964	66.478	-0.24145					123	37	5	0	0	0	0.71833	1	7549	7549		65.803	7.0212	1	22119000			2910	1640	1725	1731	3779	3779					0.01877533773961204
ANSTTNLAAI	10	Unmodified	_ANSTTNLAAI_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2588806152344	2	488.258914	974.503274	-0.18482	-9.0238E-05	-0.37738	-0.00018426	-0.5622	-0.0002745	488.2587311374174	41.59	1.3785	41.462	41.08	42.459	-0.12857					109	39	5	0	0	0	0.71272	1	3734	3734		66.429	0	1	17220000			2911	5229	1726	1732	3780	3780					0.015002756838953246
ANTLYNNTI	9	Unmodified	_ANTLYNNTI_					0	0	0		nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1;ENST00000523214.5_1_8:125500837-125516518:-|nuORF	nc|ENSG00000147687|Q6P1N9-2|TATDN1	nc|ENSG00000147687|Q6P1N9-2|TATDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3056640625	2	512.258914	1022.50327	-0.39319	-0.00020141	-2.6325	-0.0013485	-3.0257	-0.00155	512.2575382484465	65.914	0.45993	65.944	65.661	66.121	0.030106					20	11	3	0	0	0	0.02435	1	7770	7770		34.173	6.2903	1	138990			2912	5991	1727	1733	3781	3781					-0.0070772431608929764
ANTRPTISV	9	Unmodified	_ANTRPTISV_					0	0	0			REV__ENSG00000197912|ENST00000645818|SPG7	REV__ENSG00000197912|ENST00000645818|SPG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7711181640625	2	479.769448	957.524344	0.32479	0.00015583	4.1204	0.0019769	4.4452	0.0021327	479.77121942885924	88.559	1.2113	88.422	88.105	89.316	-0.13744					73	28	4	0	0	0	0.31037	1	10808	10808		74.255	10.949	1	1951000	+		2913	28363	1728	1734	3782	3782					0.0438828578344328
ANTTQFKRL	9	Unmodified	_ANTTQFKRL_					0	0	0		nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.8056640625	2	539.803823	1077.59309	-0.47975	-0.00025897	3.7855	0.0020434	3.3057	0.0017844	539.8056242578151	41.422	1.1113	41.299	40.98	42.091	-0.12317					83	31	4	0	0	0	0.35646	1	3725	3725		68.787	8.4929	1	4848700			2914	6120	1729	1735	3783	3783					0.057399500831252226
ANVAVEPET	9	Unmodified	_ANVAVEPET_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.77752685546875	2	465.232364	928.450176	0.0086814	4.0389E-06	0.32891	0.00015302	0.3376	0.00015706	465.2323933902635	49.669	0.70066	49.669	49.212	49.913	0					29	18	2	0	0	0	0.024292	1	5093	5093		25.574	9.1009	1	191100			2915	1175	1730	1736	3784	3784					-0.016911020987663505
ANVNLAKIS	9	Unmodified	_ANVNLAKIS_					0	0	0		RPRD2|p.D452N|1|0.27|ENSG00000163125|chr1:150460260-150460260|G/A|missense_variant	RPRD2|p.D452N|1|0.27|ENSG00000163125|chr1:150460260-150460260|G/A|missense_variant	RPRD2|p.D452N|1|0.27|ENSG00000163125|chr1:150460260-150460260|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7767639160156	2	465.274367	928.53418	-0.60422	-0.00028113	-1.7195	-0.00080005	-2.3237	-0.0010812	465.2731447360255	49.459	0.70762	49.533	49.096	49.804	0.074196					30	18	2	0	0	0	0.024292	1	5024	5024		49.442	7.0454	1	150530			2916	37844	1731	1737	3785	3785					0.06705473788792915
ANWTLTPLK	9	Unmodified	_ANWTLTPLK_					0	0	0		ENSG00000005421|ENST00000222381|PON1	ENSG00000005421|ENST00000222381|PON1	ENSG00000005421|ENST00000222381|PON1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2577514648438	2	522.297842	1042.58113	-1.1691	-0.00061061	-2.9813	-0.0015571	-4.1504	-0.0021678	522.2960337655902	24.206	0.79185	24.159	23.741	24.533	-0.047148					15	10	2	0	0	0	0.024397	1	964	964		39.253	20.928	1	104770			2917	768	1732	1738	3786	3786					0.061543333399413314
APAAAARAAA	10	Unmodified	_APAAAARAAA_					0	0	0		ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7380065917969	2	420.737951	839.46135	-0.347	-0.000146	0.98873	0.00041599	0.64172	0.00027	420.73828310758734	23.34	1.1792	23.34	22.987	24.166	0					65	27	4	0	0	0	0.75995	1	895	895		63.306	2.3343	1	3391000			2918	5369	1733	1739	3787	3787					0.03519764786028645
APAAGSKVL	9	Unmodified	_APAAGSKVL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.2454528808594	2	407.245078	812.475603	0.52944	0.00021561	-0.10992	-4.4766E-05	0.41951	0.00017084	407.2448972967704	31.569	0.60631	31.569	31.343	31.949	0					30	14	3	0	0	0	0.10174	1	2121	2121		110.12	22.366	1	1080500			2919	8440	1734	1740	3788	3788					0.06186417214314588
APAAGSKVL	9	Unmodified	_APAAGSKVL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	407.2452087402344	2	407.245078	812.475603	0.25608	0.00010429	0.31105	0.00012667	0.56712	0.00023096	407.2450319681514	31.54	0.8931	31.552	31.17	32.063	0.011797					45	21	3	0	0	0	0.15366	1	2099	2099		98.629	16.389	1	1094500			2920	8440	1734	1740	3789	3789					0.06186417214314588
APAAGSKVL	9	Unmodified	_APAAGSKVL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	407.245078	812.475603	1.1505	0.00046855	-0.60136	-0.0002449	0.54917	0.00022365	407.24464055241407	31.302	0.88569	31.371	31.082	31.967	0.06896	-0.12625	-0.00037684	NaN	110.12	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	996940			2921	8440	1734	1740							0.06186417214314588
APAANLASR	9	Unmodified	_APAANLASR_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.7434997558594	2	435.743234	869.471915	-0.52652	-0.00022943	0.40529	0.0001766	-0.12123	-5.2824E-05	435.74330948061373	33.267	0.56998	33.274	32.928	33.498	0.0066223					43	15	4	0	0	0	0.50848	1	2393	2393		58.782	0.55203	1	5002100			2922	7760	1735	1741	3790	3790					0.03195747440474861
APAAQPPTV	9	Unmodified	_APAAQPPTV_					0	0	0		ENST00000603038.1_1_19:34617909-34618176:+|nuORF	ENST00000603038.1_1_19:34617909-34618176:+|nuORF	ENST00000603038.1_1_19:34617909-34618176:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.235107421875	2	426.23471	850.454868	-0.34883	-0.00014868	-0.19169	-8.1707E-05	-0.54053	-0.00023039	426.23473796459996	27.693	1.5394	27.774	27.245	28.784	0.081293					163	38	6	0	0	0	0.25032	1	1541	1541		82.305	0.064519	1	64269000			2923	17540	1736	1742	3791	3791					0.0236582683467077
APADAGPEPV	10	Unmodified	_APADAGPEPV_					0	0	0		nc|ENSG00000165238|Q9Y3S1-3|WNK2;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7587890625	2	462.227082	922.439611	-1.028	-0.00047515	-2.9958	-0.0013848	-4.0238	-0.0018599	462.22627537988694	30.859	0.28621	30.859	30.634	30.92	0					9	6	2	0	0	0	0.03519	1	2015	2015		20.947	0	1	54964			2924	7384	1737	1743	3792	3792					-0.024710847531878244
APAEKKAKP	9	Unmodified	_APAEKKAKP_					0	0	0			REV__ENST00000582736.1_1_17:27047023-27047984:+|nuORF	REV__ENST00000582736.1_1_17:27047023-27047984:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.8016357421875	2	470.284734	938.554916	0.81648	0.00038398	-0.66739	-0.00031386	0.14909	7.0115E-05	470.28414859794196	50.977	0.61351	50.865	50.675	51.288	-0.11163					26	15	2	0	0	0	0.024438	1	5227	5227		36.447	9.6506	1	553820	+		2925	28404	1738	1744	3793	3793					0.08318064168474848
APAEPRPLQ	9	Unmodified	_APAEPRPLQ_					0	0	0			REV__ENST00000562593.5_1_16:88909039-88909435:-|nuORF	REV__ENST00000562593.5_1_16:88909039-88909435:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2865295410156	2	489.771991	977.529429	-0.10057	-4.9255E-05	-0.92557	-0.00045332	-1.0261	-0.00050257	489.77165011152465	63.256	1.2655	63.072	62.704	63.97	-0.18386					48	31	2	0	0	0	0.024436	1	7168	7168		23.042	2.0956	1	154810	+		2926	35200	1739	1745	3794	3794					0.03976589646049433
APAFLLPDGG	10	Unmodified	_APAFLLPDGG_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2770080566406	2	479.255643	956.496732	-0.81347	-0.00038986	-1.8721	-0.00089721	-2.6856	-0.0012871	479.2546032656145	35.705	1.1895	35.663	34.807	35.996	-0.042458					46	31	2	0	0	0	0.03519	1	2667	2667		30.504	11.144	1	208950	+		2927	26771	1740	1746	3795	3795					0.016743825231969822
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.77197265625	2	434.771794	867.529036	-0.457	-0.00019869	-0.16033	-6.9706E-05	-0.61733	-0.0002684	434.7719280392541	25.342	2.2508	25.342	24.964	27.215	0					150	54	5	0	0	0	0.20304	10	1237	1165;1175;1187;1199;1211;1223;1237;1249;1261;1273		88.643	28.349	1	51877000			2928	6859	1741	1747	3796;3797;3798;3799;3800;3801;3802;3803;3804;3805	3802					0.08997214716850976
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7718811035156	2	434.771794	867.529036	-0.68662	-0.00029852	0.14249	6.1951E-05	-0.54413	-0.00023657	434.77206441448254	25.377	2.342	25.343	24.771	27.113	-0.034395					150	56	5	0	0	0	0.18276	10	1183	1161;1171;1183;1195;1207;1219;1231;1243;1255;1268		92.191	36.686	1	51802000			2929	6859	1741	1747	3806;3807;3808;3809;3810;3811;3812;3813;3814;3815	3808					0.08997214716850976
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7719421386719	2	434.771794	867.529036	0.58151	0.00025283	-1.1522	-0.00050093	-0.57066	-0.00024811	434.77156241011204	25.265	2.0928	25.345	25.006	27.099	0.08009					146	50	6	0	0	0	0.22754	9	1144	1109;1120;1132;1144;1156;1169;1182;1195;1214		85.359	19.462	1	57743000			2930	6859	1741	1747	3816;3817;3818;3819;3820;3821;3822;3823;3824	3819					0.08997214716850976
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	434.771794	867.529036	-0.51378	-0.00022338	0.85398	0.00037129	0.3402	0.00014791	434.77192342064336	25.601	0.41393	25.374	25.231	25.645	-0.22683	0.036777	0.00088661	NaN	92.191	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77632			2931	6859	1741	1747							0.08997214716850976
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	434.771794	867.529036	0.43714	0.00019005	-0.58748	-0.00025542	-0.15034	-6.5366E-05	434.7715626553355	25.454	0.3333	25.282	25.159	25.492	-0.17151	-0.054958	-0.0003668	NaN	92.191	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42851			2932	6859	1741	1747							0.08997214716850976
APAGSVDKQAI	11	Unmodified	_APAGSVDKQAI_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8104248046875	2	528.787838	1055.56112	-0.20853	-0.00011027	0.21795	0.00011525	0.0094163	4.9792E-06	528.7880295686173	64.063	0.61343	63.812	63.48	64.094	-0.2514					30	14	3	0	0	0	0.024756	1	7490	7490		36.447	0	1	768930			2933	5408	1742	1748	3825	3825					0.035565376093245504
APAHGHRPREP	11	Unmodified	_APAHGHRPREP_					0	0	0			REV__ENST00000607222.1_1_1:1550749-1550920:-|nuORF	REV__ENST00000607222.1_1_1:1550749-1550920:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2474060058594	3	408.883005	1223.62719	0.4416	0.00018056	-2.3387	-0.00095624	-1.8971	-0.00077568	408.8823268595974	36.742	1.0528	36.679	36.362	37.415	-0.063389					76	27	4	0	0	0	0.024749	1	3022	3022		9.6461	0	1	296430	+		2934	35946	1743	1749	3826	3826					0.024317912947253717
APAHPSLL	8	Unmodified	_APAHPSLL_					0	0	0		nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2247314453125	2	403.231971	804.449388	0.87997	0.00035483	0.86714	0.00034966	1.7471	0.00070449	403.23230909051	27.117	0.82796	27.117	26.825	27.653	0					24	21	2	0	0	0	0.027866	1	1500	1500		37.028	0	1	98209			2935	4426	1744	1750	3827	3827					0.03934148042867491
APAHPSLL	8	Unmodified	_APAHPSLL_					0	0	0		nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	403.231971	804.449388	0.12729	5.1328E-05	0.92123	0.00037147	1.0485	0.0004228	403.23235288485085	27.184	1.0304	26.942	26.262	27.292	-0.24217	-0.017271	0.00019642	NaN	37.028	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108960			2936	4426	1744	1750							0.03934148042867491
APAHPSLL	8	Unmodified	_APAHPSLL_					0	0	0		nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	403.231971	804.449388	0.53126	0.00021422	0.088253	3.5586E-05	0.61951	0.00024981	403.2318128901852	26.987	0.93962	26.819	26.42	27.359	-0.16816	-0.14014	-0.00047535	NaN	37.028	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119170			2937	4426	1744	1750							0.03934148042867491
APAIWFIL	8	Unmodified	_APAIWFIL_					0	0	0			REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.80450439453125	2	465.776014	929.537475	-0.74847	-0.00034862	3.1544	0.0014692	2.4059	0.0011206	465.7773613026168	84.024	1.0153	83.952	83.743	84.758	-0.072769					35	23	2	0	0	0	0.027866	1	10566	10566		43.626	20.584	1	298850	+		2938	26436	1745	1751	3828	3828					0.06988768633470954
APAKAQSAL	9	Unmodified	_APAKAQSAL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.74853515625	2	428.747985	855.481417	-0.88157	-0.00037797	2.208	0.00094667	1.3264	0.0005687	428.7488113186954	25.391	0.86319	25.391	25.094	25.957	0					48	20	3	0	0	0	0.19099	1	1209	1209		90.37	0	1	1110400			2939	2874	1746	1752	3829	3829					0.047895157259858934
APAKAQSAL	9	Unmodified	_APAKAQSAL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.7488708496094	2	428.747985	855.481417	-0.81611	-0.0003499	2.3453	0.0010055	1.5292	0.00065562	428.7488237306695	25.444	0.90972	25.41	25.121	26.03	-0.034397					44	21	3	0	0	0	0.082191	1	1198	1198		116.9	23.708	1	1037000			2940	2874	1746	1752	3830	3830					0.047895157259858934
APAKHPEV	8	Unmodified	_APAKHPEV_					0	0	0			REV__ENSG00000110719|ENST00000265686|TCIRG1	REV__ENSG00000110719|ENST00000265686|TCIRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.73480224609375	2	424.734877	847.455202	0.30764	0.00013067	-0.34584	-0.00014689	-0.0382	-1.6225E-05	424.7346133443939	37.316	0.85363	37.348	37.035	37.889	0.032269					49	22	3	0	0	0	0.87148	1	3002	3002		53.351	3.3269	1	3411400	+		2941	21870	1747	1753	3831	3831					0.02537246554527428
APALAPAPK	9	Unmodified	_APALAPAPK_					0	0	0			REV__FCHO1|p.R367L|1|0.44|ENSG00000130475|chr19:17776079-17776079|G/T|missense_variant	REV__FCHO1|p.R367L|1|0.44|ENSG00000130475|chr19:17776079-17776079|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	418.5218811035156	2	418.255446	834.496338	-0.68217	-0.00028532	1.3389	0.00056002	0.65677	0.0002747	418.25578494958256	39.471	0.39251	39.495	39.313	39.706	0.023727					19	10	2	0	0	0	0.024436	1	3356	3356		30.504	0	1	170030	+		2942	36033	1748	1754	3832	3832					0.07247007593991839
APALCHQHTC	10	Unmodified	_APALCHQHTC_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant;ENST00000556830.1_1_12:57559409-57560120:+|nuORF	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.792236328125	2	540.739311	1079.46407	-1.1054	-0.00059774	-0.038041	-2.057E-05	-1.1435	-0.00061831	540.7393053825604	78.06	0.53507	78.076	77.821	78.356	0.015907					20	12	3	0	0	0	0.03519	1	9610	9610		16.473	0.83134	1	88304			2943	3974	1749	1755	3833	3833					-0.07248471142975177
APALLRAAP	9	Unmodified	_APALLRAAP_					0	0	0			REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2276916503906	2	440.27417	878.533787	-0.14652	-6.451E-05	1.6114	0.00070945	1.4649	0.00064494	440.27506490443943	34.229	1.2351	34.229	33.894	35.129	0					51	31	3	0	0	0	0.024293	1	2672	2672		33.516	5.2613	1	696240	+		2944	30710	1750	1756	3834	3834					0.08966098859605154
APALLRAAP	9	Unmodified	_APALLRAAP_					0	0	0			REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	440.27417	878.533787	0.13375	5.8887E-05	-0.065708	-2.8929E-05	0.068043	2.9957E-05	440.2739669641669	34.055	0.66094	34.05	33.753	34.414	-0.0045624	-0.083585	-0.00020801	NaN	33.516	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630620	+		2945	30710	1750	1756							0.08966098859605154
APALLRAAP	9	Unmodified	_APALLRAAP_					0	0	0			REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	440.27417	878.533787	-0.39349	-0.00017324	0.30493	0.00013425	-0.088558	-3.899E-05	440.2741453875157	34.072	0.67373	34.122	33.844	34.518	0.050255	-0.011518	0.00011836	NaN	33.516	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607600	+		2946	30710	1750	1756							0.08966098859605154
APALNDLLGL	10	Unmodified	_APALNDLLGL_					0	0	0			REV__ENSG00000188800|ENST00000372766|TMCO2	REV__ENSG00000188800|ENST00000372766|TMCO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7884826660156	2	498.78985	995.565146	-0.42546	-0.00021222	-2.9852	-0.001489	-3.4107	-0.0017012	498.7883940741003	21.611	1.2857	21.521	21.158	22.444	-0.090092					64	26	4	0	0	0	1.0271	1	701	701		42.396	8.8806	1	2493100	+		2947	28066	1751	1757	3835	3835					0.06718627103043673
APALRLQK	8	Unmodified	_APALRLQK_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.20831298828125	2	448.787444	895.560336	-0.28038	-0.00012583	0.6293	0.00028242	0.34892	0.00015659	448.7875959696854	31.632	0.64658	31.701	31.445	32.092	0.06896					32	15	3	0	0	0	0.027866	1	2108	2108		33.516	6.7195	1	619940			2948	2086	1752	1758	3836	3836					0.10837787750949701
APALRPLVI	9	Unmodified	_APALRPLVI_					0	0	0		nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA;nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-2|CEBPA	nc|ENSG00000245848|P49715-2|CEBPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.96148681640625	2	475.313295	948.612037	1.6431	0.00078098	-1.9059	-0.00090588	-0.26278	-0.0001249	475.31226097131383	63.301	0.71439	63.355	63.054	63.768	0.054104					34	19	2	0	0	0	0.024381	1	7356	7356		37.159	6.6555	1	1376600			2949	10827	1753	1759	3837	3837					0.1356753144484628
APALRTAL	8	Unmodified	_APALRTAL_					0	0	0		ENST00000367334.9_1_1:201104135-201104420:-|nuORF	ENST00000367334.9_1_1:201104135-201104420:-|nuORF	ENST00000367334.9_1_1:201104135-201104420:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.75311279296875	2	406.75307	811.491587	-0.014864	-6.0462E-06	0.091657	3.7282E-05	0.076793	3.1236E-05	406.75306876872264	45.377	0.61711	45.228	44.866	45.483	-0.1488					44	17	4	0	0	0	0.78609	1	4373	4373		60.294	2.4827	1	3148300			2950	12854	1754	1760	3838	3838					0.07830123451208237
APANGLRRAA	10	Unmodified	_APANGLRRAA_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7884826660156	2	498.788507	995.562461	-0.5002	-0.00024949	-0.16289	-8.1249E-05	-0.66309	-0.00033074	498.7884542741766	21.56	1.003	21.56	21.195	22.198	0					59	20	4	0	0	0	1.0781	1	699	699		35.618	0	1	2404800			2951	7033	1755	1761	3839	3839					0.06450216488747174
APAPAAHVA	9	Unmodified	_APAPAAHVA_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	402.72210693359375	2	402.72177	803.428987	1.3901	0.00055981	0.55789	0.00022468	1.948	0.00078448	402.72138259356916	26.975	1.1664	27.057	26.629	27.795	0.081291					75	30	4	0	0	0	0.48384	1	1356	1356		60.404	8.1045	1	2127400			2952	1230	1756	1762	3840	3840					0.019409773830375343
APAPAAHVA	9	Unmodified	_APAPAAHVA_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	402.72177	803.428987	0.84218	0.00033916	1.3683	0.00055104	2.2105	0.00089021	402.7217424081873	27.258	1.1744	27.258	26.825	27.999	0	0.0081982	-0.00022149	NaN	60.404	76	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2058700			2953	1230	1756	1762							0.019409773830375343
APAPAAHVA	9	Unmodified	_APAPAAHVA_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;nc|ENSG00000060138|P16989-2|YBX3	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	402.72177	803.428987	0.18672	7.5195E-05	4.0404	0.0016272	4.2272	0.0017024	402.722573471979	27.639	0.37622	27.471	27.273	27.649	-0.16816	0.22134	0.0019308	NaN	60.404	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37796			2954	1230	1756	1762							0.019409773830375343
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;ENST00000468665.1_1_1:28337454-28343730:-|nuORF	nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.7615661621094	2	447.761426	893.5083	-0.53854	-0.00024114	0.42222	0.00018906	-0.11632	-5.2083E-05	447.7615484607419	33	0.91107	33	32.679	33.59	0					70	24	4	0	0	0	0.08613	4	2351	2329;2340;2351;2367		115.46	23.498	1	4529400			2955	6650	1757	1763	3841;3842;3843;3844	3843					0.057286243371777346
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;ENST00000468665.1_1_1:28337454-28343730:-|nuORF	nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.761474609375	2	447.761426	893.5083	-0.45124	-0.00020205	0.17183	7.6939E-05	-0.27941	-0.00012511	447.7613923189346	32.926	1.0897	32.933	32.371	33.461	0.0066223					76	29	4	0	0	0	0.17455	3	2326	2303;2313;2326		94.006	19.556	1	4372600			2956	6650	1757	1763	3845;3846;3847	3847					0.057286243371777346
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;ENST00000468665.1_1_1:28337454-28343730:-|nuORF	nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.7615966796875	2	447.761426	893.5083	0.21988	9.8453E-05	-0.54284	-0.00024306	-0.32296	-0.00014461	447.76107052158653	32.764	1.0775	32.827	32.428	33.506	0.062889					80	28	4	0	0	0	0.11848	3	2267	2245;2254;2267		106.42	20.032	1	4587700			2957	6650	1757	1763	3848;3849;3850	3850					0.057286243371777346
APAPAPPGDL	10	Unmodified	_APAPAPPGDL_					0	0	0		ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.7532043457031	2	453.239993	904.465432	1.8874	0.00085546	2.2917	0.0010387	4.1791	0.0018941	453.2408215673187	74.049	0.59514	74.049	73.871	74.466	0					22	13	2	0	0	0	0.03519	1	9107	9107		51.335	19.381	1	346480			2958	5343	1758	1764	3851	3851					0.00937809489096253
APAPASDGAP	10	Unmodified	_APAPASDGAP_					0	0	0			REV__ENST00000466444.6_1_6:116892612-116892705:+|nuORF	REV__ENST00000466444.6_1_6:116892612-116892705:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2662048339844	2	427.20615	852.397747	0.46898	0.00020035	-1.5237	-0.00065095	-1.0547	-0.0004506	427.20516965399526	42.699	0.54592	42.725	42.459	43.005	0.026012					20	14	2	0	0	0	0.03519	1	3857	3857		27.882	5.9224	1	118200	+		2959	33038	1759	1765	3852	3852					-0.03435640441716714
APAPASSGLA	10	Unmodified	_APAPASSGLA_					0	0	0			REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7442321777344	2	421.224342	840.434132	-0.44695	-0.00018827	-2.2091	-0.00093054	-2.6561	-0.0011188	421.2228368031084	27.467	0.22147	27.467	27.286	27.508	0					8	5	2	0	0	0	0.03519	1	1508	1508		29.15	0	1	81626	+		2960	33738	1760	1766	3853	3853					0.007532364550115744
APAPAVGRW	9	Unmodified	_APAPAVGRW_					0	0	0		ENST00000598755.1_1_19:52104480-52104837:+|nuORF	ENST00000598755.1_1_19:52104480-52104837:+|nuORF	ENST00000598755.1_1_19:52104480-52104837:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2318115234375	2	462.756144	923.497735	-0.47463	-0.00021964	-3.4839	-0.0016122	-3.9586	-0.0018318	462.7544206490816	29.008	0.41193	29.012	28.755	29.166	0.0031357					15	9	2	0	0	0	0.024517	1	1700	1700		35.201	19.559	1	136510			2961	17478	1761	1767	3854	3854					0.03292641682753583
APAPAVGRW	9	Unmodified	_APAPAVGRW_					0	0	0		ENST00000598755.1_1_19:52104480-52104837:+|nuORF	ENST00000598755.1_1_19:52104480-52104837:+|nuORF	ENST00000598755.1_1_19:52104480-52104837:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.756144	923.497735	0.59763	0.00027656	-4.261	-0.0019718	-3.6634	-0.0016953	462.75414564258574	28.724	0.44432	28.805	28.574	29.018	0.080811	-0.15119	-0.00066132	NaN	12.959	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153460			2962	17478	1761	1767							0.03292641682753583
APAPEGRAL	9	Unmodified	_APAPEGRAL_					0	0	0		ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.24517822265625	2	441.245609	880.476666	-0.32026	-0.00014131	0.7072	0.00031205	0.38694	0.00017073	441.2457077370931	32.476	1.2512	32.488	31.943	33.194	0.011795					64	32	4	0	0	0	0.70156	1	2243	2243		45.972	2.3462	1	1069400			2963	4497	1762	1768	3855	3855					0.03164631583240407
APAPEGRAL	9	Unmodified	_APAPEGRAL_					0	0	0		ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.2452392578125	2	441.245609	880.476666	-0.10812	-4.7708E-05	0.58876	0.00025979	0.48063	0.00021208	441.24569435700136	32.246	1.1504	32.309	31.961	33.112	0.062885					66	29	4	0	0	0	0.42604	1	2168	2168		64.207	9.3127	1	1039400			2964	4497	1762	1768	3856	3856					0.03164631583240407
APAPEGRAL	9	Unmodified	_APAPEGRAL_					0	0	0		ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	ENSG00000131116|ENST00000300811|ZNF428	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	441.245609	880.476666	-0.40464	-0.00017854	0.81265	0.00035858	0.40802	0.00018003	441.24574911343973	32.581	0.9466	32.581	32.109	33.056	0	0.12171	6.1744E-05	NaN	64.207	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1094000			2965	4497	1762	1768							0.03164631583240407
APAPFHPD	8	Unmodified	_APAPFHPD_					0	0	0			REV__ENSG00000140548|ENST00000268154|ZNF710	REV__ENSG00000140548|ENST00000268154|ZNF710	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.23504638671875	2	426.205953	850.397353	-0.52168	-0.00022234	-2.3058	-0.00098273	-2.8274	-0.0012051	426.2041080198096	27.962	0.85762	27.958	27.848	28.706	-0.0042019					32	20	3	0	0	0	0.027866	1	1636	1636		83.287	14.5	1	263220	+		2966	24028	1763	1769	3857	3857					-0.03383015370911835
APAPGDVPK	9	Unmodified	_APAPGDVPK_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2350158691406	2	426.23471	850.454868	-1.0203	-0.00043488	0.49023	0.00020896	-0.53006	-0.00022593	426.23509524672085	28.017	1.5974	28.017	27.435	29.032	0					165	39	6	0	0	0	0.049585	1	1625	1625		128.86	3.0471	1	72820000			2967	3196	1764	1770	3858	3858					0.0236582683467077
APAPGDVPK	9	Unmodified	_APAPGDVPK_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.23468017578125	2	426.23471	850.454868	-0.34883	-0.00014868	-0.19169	-8.1707E-05	-0.54053	-0.00023039	426.23473796459996	27.693	1.5394	27.774	27.245	28.784	0.081293					163	38	6	0	0	0	0.074956	1	1504	1504		119.56	2.6532	1	64269000			2968	3196	1764	1770	3859	3859					0.0236582683467077
APAPGPSAAL	10	Unmodified	_APAPGPSAAL_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.23504638671875	2	426.23471	850.454868	-0.51754	-0.00022059	-0.096801	-4.126E-05	-0.61434	-0.00026185	426.2348480408077	28.026	1.5703	28.022	27.436	29.006	-0.0042019					177	38	6	0	0	0	0.32474	1	1636	1636		106.42	8.9425	1	70064000	+		2969	35984	1765	1771	3860	3860					0.023658268346594014
APAPGRPAL	9	Unmodified	_APAPGRPAL_					0	0	0			REV__ENST00000335866.7_1_7:50823703-50861020:-|nuORF	REV__ENST00000335866.7_1_7:50823703-50861020:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.73455810546875	2	425.250695	848.486836	-0.17171	-7.3019E-05	0.025998	1.1056E-05	-0.14571	-6.1963E-05	425.2505987345075	37.272	0.47394	37.208	37.014	37.488	-0.063385					16	12	2	0	0	0	0.024325	1	3023	3023		31.955	0	1	80230	+		2970	30537	1766	1772	3861	3861					0.05653239308469438
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.75872802734375	2	497.758884	993.503215	0.39868	0.00019845	-1.3931	-0.00069341	-0.99439	-0.00049497	497.758511754194	40.868	0.84444	40.868	40.551	41.396	0					78	23	5	0	0	0	0.10076	2	3616	3616;3626		110.34	52.526	1	6284600			2971	1144	1767	1773	3862;3863	3862					0.006203204745702351
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7587890625	2	497.758884	993.503215	0.47468	0.00023627	-1.6183	-0.00080553	-1.1436	-0.00056926	497.7583226548332	41.032	1.1433	40.909	40.618	41.762	-0.12318					91	31	5	0	0	0	0.028181	2	3632	3623;3632		143.02	82.047	1	6072000			2972	1144	1767	1773	3864;3865	3865					0.006203204745702351
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7586669921875	2	497.758884	993.503215	-0.054393	-2.7074E-05	-0.9426	-0.00046919	-0.99699	-0.00049626	497.7586441644793	41.01	0.80016	41.033	40.73	41.53	0.023003					77	22	4	0	0	0	0.11848	2	3587	3587;3599		106.42	49.694	1	5954500			2973	1144	1767	1773	3866;3867	3866					0.006203204745702351
APAPKPEAA	9	Unmodified	_APAPKPEAA_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.23480224609375	2	426.23471	850.454868	-1.0203	-0.00043488	0.49023	0.00020896	-0.53006	-0.00022593	426.23509524672085	28.017	1.5974	28.017	27.435	29.032	0					165	39	6	0	0	0	0.10174	1	1613	1613		110.12	7.3465	1	72820000			2974	10454	1768	1774	3868	3868					0.023658268346594014
APAPLATHS	9	Unmodified	_APAPLATHS_					0	0	0			REV__ENST00000292539.8_1_8:145722273-145722696:+|nuORF	REV__ENST00000292539.8_1_8:145722273-145722696:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7318420410156	2	432.732335	863.450116	1.1632	0.00050335	-1.9665	-0.00085099	-0.80336	-0.00034764	432.7312915054073	99.078	2.4922	98.954	97.371	99.863	-0.12459					146	62	4	0	0	0	0.80658	1	12264	12264		38.806	3.1879	1	1722000	+		2975	29953	1769	1775	3869	3869					0.012929426919072284
APAPLRGY	8	Unmodified	_APAPLRGY_					0	0	0			REV__ENSG00000162068|ENST00000293973|NTN3	REV__ENSG00000162068|ENST00000293973|NTN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.818359375	2	422.73742	843.460287	-1.0818	-0.00045733	1.4894	0.00062962	0.40755	0.00017229	422.73783526965354	28.586	0.95624	28.341	27.882	28.838	-0.24524					25	22	2	0	0	0	0.027866	1	1639	1639		35.201	22.242	1	239320	+		2976	25414	1770	1776	3870	3870					0.03229550417131577
APAPLRGY	8	Unmodified	_APAPLRGY_					0	0	0			REV__ENSG00000162068|ENST00000293973|NTN3	REV__ENSG00000162068|ENST00000293973|NTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.73742	843.460287	-0.45426	-0.00019203	1.0923	0.00046174	0.63801	0.00026971	422.7376562642932	28.455	0.67784	28.286	28.007	28.685	-0.16897	-0.03964	0.00016819	NaN	35.201	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179260	+		2977	25414	1770	1776							0.03229550417131577
APAPLRGY	8	Unmodified	_APAPLRGY_					0	0	0			REV__ENSG00000162068|ENST00000293973|NTN3	REV__ENSG00000162068|ENST00000293973|NTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	422.73742	843.460287	-0.22531	-9.5245E-05	0.50883	0.0002151	0.28352	0.00011986	422.7374931572526	28.502	0.36677	28.35	28.203	28.57	-0.15195	0.024458	-0.00032509	NaN	35.201	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209540	+		2978	25414	1770	1776							0.03229550417131577
APAPPKAEA	9	Unmodified	_APAPPKAEA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.23480224609375	2	426.23471	850.454868	-1.0203	-0.00043488	0.49023	0.00020896	-0.53006	-0.00022593	426.23509524672085	28.017	1.5974	28.017	27.435	29.032	0					165	39	6	0	0	0	0.021872	6	1577	1567;1577;1589;1601;1637;1651		148.04	39.451	1	72820000			2979	10111	1771	1777	3871;3872;3873;3874;3875;3876	3872					0.023658268346594014
APAPPKAEA	9	Unmodified	_APAPPKAEA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2347106933594	2	426.23471	850.454868	-0.51754	-0.00022059	-0.096801	-4.126E-05	-0.61434	-0.00026185	426.2348480408077	28.026	1.5703	28.022	27.436	29.006	-0.0042019					177	38	6	0	0	0	0.016871	6	1561	1551;1561;1585;1597;1609;1621		152.47	22.788	1	70064000			2980	10111	1771	1777	3877;3878;3879;3880;3881;3882	3878					0.023658268346594014
APAPPKAEA	9	Unmodified	_APAPPKAEA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2347717285156	2	426.23471	850.454868	-0.34883	-0.00014868	-0.19169	-8.1707E-05	-0.54053	-0.00023039	426.23473796459996	27.693	1.5394	27.774	27.245	28.784	0.081293					163	38	6	0	0	0	0.033448	6	1469	1460;1469;1480;1492;1516;1528		138.83	37.225	1	64269000			2981	10111	1771	1777	3883;3884;3885;3886;3887;3888	3884					0.023658268346594014
APAPPPPTVGA	11	Unmodified	_APAPPPPTVGA_					0	0	0			REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.80303955078125	2	487.768917	973.523281	0.31332	0.00015283	0.65098	0.00031753	0.96429	0.00047035	487.76933660807094	88.491	0.46995	88.491	88.297	88.767	0					18	10	2	0	0	0	0.024734	1	11172	11172		16.473	0	1	70097	+		2982	33134	1772	1778	3889	3889					0.03546071414518792
APAPPPPTVGA	11	Unmodified	_APAPPPPTVGA_					0	0	0			REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.768917	973.523281	-0.57807	-0.00028196	0.67708	0.00033026	0.099016	4.8297E-05	487.768987052285	88.544	0.54068	88.373	88.131	88.672	-0.17053	-0.066265	0.00071098	NaN	16.473	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173010	+		2983	33134	1772	1778							0.03546071414518792
APAPPPPTVGA	11	Unmodified	_APAPPPPTVGA_					0	0	0			REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.768917	973.523281	0.099628	4.8596E-05	-0.14392	-7.0199E-05	-0.04429	-2.1603E-05	487.76866164469897	88.582	0.54621	88.45	88.194	88.74	-0.13135	0.010863	-8.994E-05	NaN	16.473	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197480	+		2984	33134	1772	1778							0.03546071414518792
APAPPPPTVGA	11	Unmodified	_APAPPPPTVGA_					0	0	0			REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	REV__ENST00000469768.1_1_3:150803652-150803709:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.768917	973.523281	0.35683	0.00017405	-0.62831	-0.00030647	-0.27148	-0.00013242	487.7685463176434	88.581	0.45963	88.443	88.232	88.692	-0.13744	0.0036092	-0.00056248	NaN	16.473	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173050	+		2985	33134	1772	1778							0.03546071414518792
APAPPPTAP	9	Unmodified	_APAPPPTAP_					0	0	0		ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.74273681640625	2	409.723978	817.433404	1.3159	0.00053917	-0.59122	-0.00024224	0.72471	0.00029693	409.72422294527956	55.132	0.30785	55.132	54.908	55.216	0					14	8	3	0	0	0	0.02309	1	6067	6067		92.191	8.9034	1	301760			2986	6860	1773	1779	3890	3890					0.017384418059350537
APAPPPVAV	9	Unmodified	_APAPPPVAV_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.7423095703125	2	409.742171	817.469789	1.3452	0.00055117	-1.3866	-0.00056814	-0.041429	-1.6975E-05	409.7416142990067	55.132	1.8846	55.132	54.723	56.608	0					153	52	5	0	0	0	0.016798	9	6080	6032;6043;6055;6080;6092;6105;6115;6127;6141		152.83	36.712	1	41511000			2987	8747	1774	1780	3891;3892;3893;3894;3895;3896;3897;3898;3899	3894					0.0537531870265866
APAPPPVAV	9	Unmodified	_APAPPPVAV_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.7423400878906	2	409.742171	817.469789	0.35754	0.0001465	-0.41741	-0.00017103	-0.059874	-2.4533E-05	409.74201622447305	55.231	2.1527	55.081	54.641	56.794	-0.15036					153	59	5	0	0	0	0.0402	9	6031	6023;6031;6043;6055;6068;6080;6091;6103;6115		133.45	33.089	1	43821000			2988	8747	1774	1780	3900;3901;3902;3903;3904;3905;3906;3907;3908	3901					0.0537531870265866
APAPPPVAV	9	Unmodified	_APAPPPVAV_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.7427062988281	2	409.742171	817.469789	0.21393	8.7657E-05	-0.227	-9.3012E-05	-0.013068	-5.3547E-06	409.7420664637176	55.02	1.7745	55.118	54.66	56.435	0.098015					150	48	5	0	0	0	0.0402	8	5963	5950;5963;5975;5987;5998;6011;6023;6049		133.45	47.54	1	41752000			2989	8747	1774	1780	3909;3910;3911;3912;3913;3914;3915;3916	3910					0.0537531870265866
APAPQPVF	8	Unmodified	_APAPQPVF_					0	0	0		nc|ENSG00000172059|O14901-2|KLF11;ENSG00000172059|ENST00000305883|KLF11	nc|ENSG00000172059|O14901-2|KLF11	nc|ENSG00000172059|O14901-2|KLF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.9264831542969	2	413.726521	825.438489	-0.13116	-5.4265E-05	-3.9623	-0.0016393	-4.0934	-0.0016936	413.72572179718304	31.06	1.4435	31.06	30.426	31.869	0					70	34	4	0	0	0	0.027866	1	2066	2066		31.579	22.757	1	435870			2990	8237	1775	1781	3917	3917					0.018787456685686266
APAPRAELP	9	Unmodified	_APAPRAELP_					0	0	0		ENST00000480399.1_1_1:49224892-49242626:-|nuORF	ENST00000480399.1_1_1:49224892-49242626:-|nuORF	ENST00000480399.1_1_1:49224892-49242626:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7691345214844	2	461.261259	920.507966	-0.14038	-6.4751E-05	0.59704	0.00027539	0.45666	0.00021064	461.2609517757839	40.446	0.7758	40.469	40.088	40.864	0.023006					32	21	3	0	0	0	0.024457	1	3474	3474		29.15	0	1	152240			2991	15199	1776	1782	3918	3918					0.04453204617323081
APAPRAPIL	9	Unmodified	_APAPRAPIL_					0	0	0			REV__ENSG00000168615|ENST00000487273|ADAM9	REV__ENSG00000168615|ENST00000487273|ADAM9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.2816162109375	2	453.281995	904.549437	0.76109	0.00034499	-1.1367	-0.00051525	-0.37562	-0.00017026	453.28141950307884	49.208	1.5814	49.208	48.83	50.411	0					93	44	4	0	0	0	0.33184	1	5060	5060		71.378	2.8932	1	8025700	+		2992	26277	1777	1783	3919	3919					0.09334385376666887
APAPRLPS	8	Unmodified	_APAPRLPS_					0	0	0			REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.7376403808594	2	404.73742	807.460287	0.2129	8.6171E-05	0.099151	4.013E-05	0.31206	0.0001263	404.7373260657372	36.27	1.0457	36.27	35.96	37.005	0					57	28	3	0	0	0	0.47665	1	2853	2853		87.754	2.8388	1	4136700	+		2993	29878	1778	1784	3920	3920					0.048855504171342545
APAPRLPS	8	Unmodified	_APAPRLPS_					0	0	0			REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	REV__ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.7376403808594	2	404.73742	807.460287	1.4477	0.00058593	-0.91242	-0.00036929	0.53526	0.00021664	404.7369021950997	36.177	1.3004	36.215	35.855	37.155	0.038044					66	35	3	0	0	0	0.56592	1	2810	2810		79.451	5.4763	1	4271600	+		2994	29878	1778	1784	3921	3921					0.048855504171342545
APAPRPSL	8	Unmodified	_APAPRPSL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.73748779296875	2	404.73742	807.460287	0.2129	8.6171E-05	0.099151	4.013E-05	0.31206	0.0001263	404.7373260657372	36.27	1.0457	36.27	35.96	37.005	0					57	28	3	0	0	0	0.42912	2	2864	2864;2876		93.195	5.4253	1	4136700			2995	5444	1779	1785	3922;3923	3922					0.048855504171342545
APAPRPSL	8	Unmodified	_APAPRPSL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.7380676269531	2	404.73742	807.460287	-0.52882	-0.00021403	0.93326	0.00037773	0.40445	0.00016369	404.7376515584353	36.129	1.1281	36.086	35.797	36.925	-0.042454					58	30	3	0	0	0	0.32162	2	2819	2819;2831		108.09	17.311	1	4243300			2996	5444	1779	1785	3924;3925	3924					0.048855504171342545
APAPRPSL	8	Unmodified	_APAPRPSL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.7376708984375	2	404.73742	807.460287	1.4477	0.00058593	-0.91242	-0.00036929	0.53526	0.00021664	404.7369021950997	36.177	1.3004	36.215	35.855	37.155	0.038044					66	35	3	0	0	0	0.62178	2	2786	2786;2797		74.255	5.4253	1	4271600			2997	5444	1779	1785	3926;3927	3926					0.048855504171342545
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.27935791015625	2	461.279452	920.544351	-0.24018	-0.00011079	0.17254	7.9588E-05	-0.067648	-3.1204E-05	461.27937190613375	47.573	1.2333	47.573	47.111	48.344	0					88	36	4	0	0	0	0.15366	2	4769	4769;4779		98.629	16.389	1	5796500			2998	5444	1780	1786	3928;3929	3928					0.08090081514046688
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2790832519531	2	461.279452	920.544351	-0.029633	-1.3669E-05	-0.050512	-2.33E-05	-0.080145	-3.6969E-05	461.2792815321926	47.69	1.2024	47.537	47.161	48.363	-0.15301					78	35	3	0	0	0	0.10174	3	4769	4769;4785;4799		110.12	22.366	1	5787400			2999	5444	1780	1786	3930;3931;3932	3930					0.08090081514046688
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.27960205078125	2	461.279452	920.544351	-0.38667	-0.00017836	0.27121	0.0001251	-0.11546	-5.3259E-05	461.27944854338557	47.45	1.08	47.509	47.214	48.294	0.059097					71	31	3	0	0	0	0.15366	2	4711	4699;4711		98.629	21.855	1	6110700			3000	5444	1780	1786	3933;3934	3934					0.08090081514046688
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.26177978515625	2	471.261791	940.509028	0.13924	6.562E-05	-0.30696	-0.00014466	-0.16772	-7.904E-05	471.2616868818563	26.249	1.4424	26.249	25.737	27.179	0					91	34	4	0	0	0	0.10174	3	1296	1296;1308;1320		110.12	46.814	1	5630000			3001	9974	1781	1787	3935;3936;3937	3935					0.03639418986244891
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.261474609375	2	471.261791	940.509028	0.53665	0.0002529	-0.72221	-0.00034035	-0.18557	-8.7451E-05	471.26147683140755	26.107	1.2944	26.188	25.665	26.96	0.081291					90	30	4	0	0	0	0.03849	3	1217	1208;1217;1234		134.81	46.168	1	4550900			3002	9974	1781	1787	3938;3939;3940	3939					0.03639418986244891
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.261791	940.509028	-0.51971	-0.00024492	0.28166	0.00013273	-0.23806	-0.00011219	471.26175287619697	26.378	0.54706	26.142	25.948	26.495	-0.23603	0.037958	0.00030501	NaN	134.81	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847720			3003	9974	1781	1787							0.03639418986244891
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.261791	940.509028	-0.090375	-4.2591E-05	-0.18994	-8.9514E-05	-0.28032	-0.0001321	471.2615765523867	26.115	0.56134	25.947	25.7	26.262	-0.16816	-0.15682	-0.00013948	NaN	134.81	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	919240			3004	9974	1781	1787							0.03639418986244891
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.261791	940.509028	-1.258	-0.00059283	0.80912	0.00038131	-0.44884	-0.00021152	471.2620535183448	26.157	0.66099	25.994	25.758	26.419	-0.16331	-0.11009	0.00080216	NaN	134.81	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902600			3005	9974	1781	1787							0.03639418986244891
APAQRKLL	8	Unmodified	_APAQRKLL_					0	0	0		nc|ENSG00000163701|Q8NFR9-5|IL17RE;ENST00000489181.5_1_3:9944520-9950978:+|nuORF;nc|ENSG00000163701|Q8NFR9-4|IL17RE;ENST00000383815.7_1_3:9944714-9956386:+|nuORF;nc|ENSG00000163701|Q8NFR9-3|IL17RE;nc|ENSG00000163701|Q8NFR9-2|IL17RE;ENSG00000163701|ENST00000383814|IL17RE	nc|ENSG00000163701|Q8NFR9-5|IL17RE	nc|ENSG00000163701|Q8NFR9-5|IL17RE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2081604003906	2	448.787444	895.560336	-0.1318	-5.9151E-05	0.40513	0.00018182	0.27333	0.00012267	448.78749249913466	31.833	0.55952	31.844	31.545	32.104	0.011799					29	13	3	0	0	0	0.027866	1	2177	2177		8.8223	0	1	465270			3006	7132	1782	1788	3941	3941					0.1083778775096107
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|3|fusion	BIRC6-SPAST|3|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.29705810546875	2	479.297645	956.580737	0.85285	0.00040877	-0.52953	-0.0002538	0.32331	0.00015496	479.29716956746876	69.973	1.4403	69.973	69.547	70.987	0					69	38	4	0	0	0	0.62163	2	8462	8441;8462		51.335	3.4775	1	6097800			3007	187	1783	1789	3942;3943	3943					0.10070958410756248
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|3|fusion	BIRC6-SPAST|3|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.29827880859375	2	479.297645	956.580737	1.0001	0.00047936	-0.5987	-0.00028695	0.40143	0.00019241	479.2971482998715	70.303	1.5577	70.01	69.551	71.109	-0.29291					69	42	3	0	0	0	0.59099	2	8460	8460;8478		53.351	16.135	1	5900200			3008	187	1783	1789	3944;3945	3944					0.10070958410756248
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|3|fusion	BIRC6-SPAST|3|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2965087890625	2	479.297645	956.580737	-0.20541	-9.8454E-05	0.54261	0.00026007	0.3372	0.00016162	479.29772652342143	70.058	1.3879	70.07	69.627	71.015	0.012413					72	35	3	0	0	0	0.72875	1	8370	8370		44.117	6.9577	1	4766400			3009	187	1783	1789	3946	3946					0.10070958410756248
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.76336669921875	2	429.763438	857.512323	0.0061232	2.6315E-06	0.24435	0.00010501	0.25047	0.00010764	429.76341323068505	61.473	0.7965	61.473	61.144	61.941	0					50	20	3	0	0	0	0.43637	3	7130	7108;7118;7130		92.191	0	1	3340800			3010	4014	1784	1790	3947;3948;3949	3949					0.07786713830898861
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.76336669921875	2	429.763438	857.512323	0.42183	0.00018129	-0.19304	-8.2963E-05	0.22879	9.8325E-05	429.76320788420645	61.727	0.89635	61.5	61.153	62.049	-0.22663					57	23	4	0	0	0	0.56067	2	7127	7114;7127		79.939	0	1	3201500			3011	4014	1784	1790	3950;3951	3951					0.07786713830898861
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	429.7630920410156	2	429.763438	857.512323	0.49861	0.00021428	-0.23304	-0.00010015	0.26558	0.00011413	429.76321090621303	61.383	0.78909	61.455	61.167	61.956	0.071129					57	20	4	0	0	0	0.43637	2	7017	7017;7031		92.191	0	1	3319200			3012	4014	1784	1790	3952;3953	3952					0.07786713830898861
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3049621582031	2	486.30547	970.596387	-1.0285	-0.00050016	-0.23087	-0.00011227	-1.2594	-0.00061243	486.30522778816436	75.602	1.0802	75.602	75.269	76.35	0					69	28	3	0	0	0	0.33245	1	9308	9308		71.296	8.3173	1	5504900			3013	4014	1785	1791	3954	3954					0.10991244927799926
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.3051452636719	2	486.30547	970.596387	-0.10818	-5.261E-05	-1.149	-0.00055877	-1.2572	-0.00061138	486.30478783227124	75.642	1.0779	75.652	75.326	76.404	0.010376					74	28	4	0	0	0	0.33245	2	9224	9224;9236		71.296	7.9894	1	5770000			3014	4014	1785	1791	3955;3956	3955					0.10991244927799926
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.30547	970.596387	-0.48804	-0.00023733	-0.74404	-0.00036183	-1.2321	-0.00059916	486.3049464076519	75.797	1.0374	75.553	75.266	76.303	-0.24455	-0.049731	-4.9221E-05	NaN	71.296	70	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5609600			3015	4014	1785	1791							0.10991244927799926
APARLPAAP	9	Unmodified	_APARLPAAP_					0	0	0		ENST00000427004.5_1_6:33378256-33380059:+|nuORF	ENST00000427004.5_1_6:33378256-33380059:+|nuORF	ENST00000427004.5_1_6:33378256-33380059:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.25860595703125	2	432.25852	862.502486	-0.97632	-0.00042202	1.2845	0.00055525	0.30821	0.00013323	432.2589662317753	35.673	0.99632	35.63	35.176	36.172	-0.042458					60	26	3	0	0	0	0.60698	1	2739	2739		52.299	2.2746	1	2685400			3016	14099	1786	1792	3957	3957					0.06573525825501747
APARLWPP	8	Unmodified	_APARLWPP_					0	0	0		ENST00000599531.1_1_19:46996416-46996824:-|nuORF	ENST00000599531.1_1_19:46996416-46996824:-|nuORF	ENST00000599531.1_1_19:46996416-46996824:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.78216552734375	2	454.261062	906.507572	-0.5714	-0.00025956	0.833	0.0003784	0.2616	0.00011884	454.2610944498712	45.052	0.64911	44.903	44.697	45.346	-0.1488					34	18	3	0	0	0	0.027866	1	4295	4295		35.201	1.6851	1	537850			3017	17493	1787	1793	3958	3958					0.050578296881212736
APARPGPAA	9	Unmodified	_APARPGPAA_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.2273254394531	2	404.22722	806.439886	0.58969	0.00023837	0.13949	5.6384E-05	0.72918	0.00029475	404.22713304188636	24.852	1.4446	24.852	24.166	25.611	0					80	33	4	0	0	0	0.14199	1	1128	1128		101.21	0	1	1328000			3018	3392	1788	1794	3959	3959					0.02892379757327035
APARPGPAA	9	Unmodified	_APARPGPAA_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.22747802734375	2	404.22722	806.439886	-0.60344	-0.00024393	1.3197	0.00053346	0.71627	0.00028954	404.2275999446706	24.916	1.7572	24.881	23.882	25.639	-0.034395					86	40	4	0	0	0	0.10076	3	1106	1106;1119;1132		110.34	0	1	1336100			3019	3392	1788	1794	3960;3961;3962	3960					0.02892379757327035
APARPGPAA	9	Unmodified	_APARPGPAA_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.22722	806.439886	2.2868	0.00092439	-1.4343	-0.00057979	0.85249	0.0003446	404.22644265693236	24.608	0.77401	24.686	24.275	25.049	0.078344	-0.12034	-0.0013237	NaN	110.34	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164310			3020	3392	1788	1794							0.02892379757327035
APARQPEP	8	Unmodified	_APARQPEP_					0	0	0		ENSG00000187867|ENST00000669674|PALM3;nc|ENSG00000187867|A6NDB9|PALM3	ENSG00000187867|ENST00000669674|PALM3	ENSG00000187867|ENST00000669674|PALM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.9141845703125	2	433.229959	864.445365	-0.20221	-8.7603E-05	0.845	0.00036608	0.64279	0.00027848	433.229656653142	41.782	0.38412	41.552	41.313	41.697	-0.23029					16	9	3	0	0	0	0.027866	1	3708	3708		33.516	12.569	1	58805			3021	9671	1789	1795	3963	3963					0.007720585491483689
APARQQGL	8	Unmodified	_APARQQGL_					0	0	0		ENSG00000198920|ENST00000361413|KIAA0753;nc|ENSG00000198920|Q2KHM9-2|KIAA0753;KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	ENSG00000198920|ENST00000361413|KIAA0753	ENSG00000198920|ENST00000361413|KIAA0753	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2279357910156	2	420.737951	839.46135	0.40472	0.00017028	-0.43335	-0.00018233	-0.028639	-1.2049E-05	420.73771531700106	25.696	0.67149	25.776	25.418	26.09	0.08009					25	15	3	0	0	0	0.027866	1	1187	1187		20.482	0	1	52578			3022	10252	1790	1796	3964	3964					0.03519764786062751
APARTPRAPAP	11	Unmodified	_APARTPRAPAP_					0	0	0		ENST00000412770.6_2_19:55769841-55770141:-|nuORF	ENST00000412770.6_2_19:55769841-55770141:-|nuORF	ENST00000412770.6_2_19:55769841-55770141:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.2725219726562	2	552.817264	1103.61998	0.10539	5.826E-05	-2.5576	-0.0014139	-2.4522	-0.0013556	552.8135258511517	77.403	0.70868	77.403	77.125	77.833	0					36	16	3	0	0	0	0.02475	1	9576	9576		42.864	18.345	1	282070			3023	13826	1791	1797	3965	3965					0.07231058694310377
APASGDDGAKL	11	Unmodified	_APASGDDGAKL_					0	0	0			REV__ENST00000368679.8_1_10:128019050-128076835:-|nuORF	REV__ENST00000368679.8_1_10:128019050-128076835:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.24969482421875	2	501.248546	1000.48254	0.28832	0.00014452	-0.24033	-0.00012046	0.047998	2.4059E-05	501.2483733429364	104.84	0.69293	104.84	104.5	105.19	0					54	22	3	0	0	0	0.9728	1	13452	13452		42.864	5.0528	1	339730	+		3024	31065	1792	1798	3966	3966					-0.01768314695743811
APASKTLTL	9	Unmodified	_APASKTLTL_					0	0	0		ENSG00000223443|ENST00000333796|USP17L2;nc|ENSG00000205946|Q6QN14|USP17L6P;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000250844|ENST00000504209|USP17L18;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000223569|ENST00000456464|USP17L15;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000226430|ENST00000530447|USP17L7	ENSG00000223443|ENST00000333796|USP17L2;ENSG00000232399|ENST00000429667|USP17L13	ENSG00000223443|ENST00000333796|USP17L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2716979980469	2	451.271293	900.528032	-0.10562	-4.7661E-05	0.33634	0.00015178	0.23072	0.00010412	451.2712102098747	41.79	0.66261	41.658	41.387	42.049	-0.13219					39	18	3	0	0	0	0.30449	1	3779	3779		75.043	7.5496	1	1092600			3025	10637;10662	1793	1799	3967	3967					0.07378955557294375
APASKTLTL	9	Unmodified	_APASKTLTL_					0	0	0		ENSG00000223443|ENST00000333796|USP17L2;nc|ENSG00000205946|Q6QN14|USP17L6P;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000250844|ENST00000504209|USP17L18;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000223569|ENST00000456464|USP17L15;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000226430|ENST00000530447|USP17L7	ENSG00000223443|ENST00000333796|USP17L2;ENSG00000232399|ENST00000429667|USP17L13	ENSG00000223443|ENST00000333796|USP17L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.271293	900.528032	0.48406	0.00021844	-0.16979	-7.6624E-05	0.31426	0.00014182	451.27097903847573	41.649	0.7582	41.649	41.396	42.154	0	-0.053441	-0.00025401	NaN	75.043	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	962590			3026	10637;10662	1793	1799							0.07378955557294375
APASKTLTL	9	Unmodified	_APASKTLTL_					0	0	0		ENSG00000223443|ENST00000333796|USP17L2;nc|ENSG00000205946|Q6QN14|USP17L6P;ENSG00000233136|ENST00000457736|USP17L11;ENSG00000250844|ENST00000504209|USP17L18;ENSG00000250745|ENST00000506151|USP17L20;ENSG00000249104|ENST00000511568|USP17L17;ENSG00000248933|ENST00000511280|USP17L22;ENSG00000248920|ENST00000515566|USP17L19;ENSG00000235780|ENST00000515574|USP17L27;ENSG00000232264|ENST00000504481|USP17L24;ENSG00000231637|ENST00000511681|USP17L29;ENSG00000231396|ENST00000417945|USP17L10;ENSG00000231051|ENST00000504543|USP17L28;ENSG00000230430|ENST00000509271|USP17L25;ENSG00000229579|ENST00000509660|USP17L26;ENSG00000228856|ENST00000504104|USP17L30;ENSG00000227140|ENST00000507227|USP17L5;ENSG00000223569|ENST00000456464|USP17L15;ENSG00000232399|ENST00000429667|USP17L13;ENSG00000226430|ENST00000530447|USP17L7	ENSG00000223443|ENST00000333796|USP17L2;ENSG00000232399|ENST00000429667|USP17L13	ENSG00000223443|ENST00000333796|USP17L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	451.271293	900.528032	0.085449	3.8561E-05	0.13268	5.9873E-05	0.21813	9.8434E-05	451.27116058611233	41.777	0.65269	41.8	41.53	42.183	0.023006	0.097744	1.8979E-05	NaN	75.043	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106500			3027	10637;10662	1793	1799							0.07378955557294375
APASMLVY	8	Unmodified	_APASMLVY_					0	0	0			REV__ENSG00000167104|ENST00000349552|BPIFB6	REV__ENSG00000167104|ENST00000349552|BPIFB6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.23504638671875	2	426.220214	850.425876	-0.52106	-0.00022209	-0.91072	-0.00038817	-1.4318	-0.00061025	426.2197883852801	28.061	0.85126	28.057	27.731	28.582	-0.0042019					35	20	3	0	0	0	0.027866	1	1636	1636		81.716	26.821	1	472500	+		3028	26104	1794	1800	3968	3968					-0.005320337859757274
APASPYLRV	9	Unmodified	_APASPYLRV_					0	0	0			REV__ENSG00000124191|ENST00000341197|TOX2	REV__ENSG00000124191|ENST00000341197|TOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.792236328125	2	487.276909	972.539266	-0.97189	-0.00047358	1.0656	0.00051926	0.093745	4.568E-05	487.2770441529057	36.305	0.4898	36.263	35.963	36.453	-0.042454					28	13	3	0	0	0	0.024477	1	2822	2822		35.618	7.364	1	409060	+		3029	22743	1795	1801	3969	3969					0.0518977765142381
APATIEPSPP	10	Unmodified	_APATIEPSPP_					0	0	0			REV__ENST00000361580.6_1_1:170024568-170043729:-|nuORF	REV__ENST00000361580.6_1_1:170024568-170043729:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2580261230469	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.1166	1	13472	13472		30.504	1.3541	1	6618800	+		3030	30945	1796	1802	3970	3970					0.012100613149982564
APATIEPSPP	10	Unmodified	_APATIEPSPP_					0	0	0			REV__ENST00000361580.6_1_1:170024568-170043729:-|nuORF	REV__ENST00000361580.6_1_1:170024568-170043729:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2577819824219	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	1.1056	1	13414	13414		31.955	5.2619	1	6674100	+		3031	30945	1796	1802	3971	3971					0.012100613149982564
APATSWMPP	9	Unmodified	_APATSWMPP_					0	0	0		ENST00000475863.5_1_2:74733990-74734243:-|nuORF	ENST00000475863.5_1_2:74733990-74734243:-|nuORF	ENST00000475863.5_1_2:74733990-74734243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7691345214844	2	479.228571	956.442588	-0.63528	-0.00030444	-2.7674	-0.0013262	-3.4027	-0.0016307	479.2267392779824	34.727	0.42567	34.777	34.557	34.983	0.050255					23	10	3	0	0	0	0.024386	1	2561	2561		33.516	0	1	214830			3032	15071	1797	1803	3972	3972					-0.03737532900026963
APATVGLAF	9	Unmodified	_APATVGLAF_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.7400817871094	2	423.739628	845.464704	0.16567	7.0199E-05	0.28725	0.00012172	0.45292	0.00019192	423.73960533994006	71.659	0.9956	71.659	71.377	72.373	0					62	25	4	0	0	0	0.40179	1	8711	8711		65.803	2.4969	1	1712400			3033	2498	1798	1804	3973	3973					0.03579014840045147
APATVGLAF	9	Unmodified	_APATVGLAF_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.73992919921875	2	423.739628	845.464704	0.37882	0.00016052	0.094855	4.0194E-05	0.47368	0.00020072	423.73952872254847	72.07	1.0718	71.781	71.427	72.499	-0.28858					59	27	3	0	0	0	0.29104	1	8711	8711		76.847	26.822	1	1525800			3034	2498	1798	1804	3974	3974					0.03579014840045147
APATVGLAF	9	Unmodified	_APATVGLAF_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.7400207519531	2	423.739628	845.464704	0.57352	0.00024302	-0.13632	-5.7765E-05	0.4372	0.00018526	423.7394273529129	71.722	0.89778	71.733	71.434	72.331	0.010139					53	23	3	0	0	0	0.20304	2	8622	8622;8634		88.643	22.84	1	1883900			3035	2498	1798	1804	3975;3976	3975					0.03579014840045147
APAVADEQV	9	Unmodified	_APAVADEQV_					0	0	0			REV__ENSG00000198597|ENST00000355537|ZNF536	REV__ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2819519042969	2	450.227082	898.439611	-0.09539	-4.2947E-05	0.60214	0.0002711	0.50675	0.00022815	450.22659494809363	51.103	0.46855	50.954	50.758	51.226	-0.14916					17	12	3	0	0	0	0.024386	1	5401	5401		33.516	9.3128	1	312830	+		3036	28438	1799	1805	3977	3977					-0.01367084753189829
APAWPGIVG	9	Unmodified	_APAWPGIVG_					0	0	0			REV__nc|ENSG00000243566|Q9BT76|UPK3B	REV__nc|ENSG00000243566|Q9BT76|UPK3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.25567626953125	2	434.239796	866.465038	0.26382	0.00011456	2.753	0.0011955	3.0168	0.00131	434.2398725292002	97.606	0.73466	97.445	97.174	97.908	-0.16106					32	16	3	0	0	0	0.024475	1	12105	12105		21.702	11.518	1	142660	+		3037	37161	1800	1806	3978	3978					0.026464345599038097
APAWPVWF	8	Unmodified	_APAWPVWF_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7772521972656	2	487.250163	972.485774	-0.61001	-0.00029723	2.6631	0.0012976	2.0531	0.0010004	487.2513481284298	24.566	0.57795	24.566	24.341	24.919	0					28	12	3	0	0	0	0.027866	1	1086	1086		24.504	2.8017	1	611290	+		3038	23822	1801	1807	3979	3979					-0.0015697506044034526
APAYSRAL	8	Unmodified	_APAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.73480224609375	2	424.734877	847.455202	0.18337	7.7885E-05	-0.21606	-9.1769E-05	-0.03269	-1.3885E-05	424.7346699244489	37.361	0.82632	37.361	37.042	37.869	0					48	22	3	0	0	0	0.53593	3	3030	3030;3043;3056		82.241	21.947	1	4498500			3039	2767	1802	1808	3980;3981;3982	3980					0.025372465545160594
APAYSRAL	8	Unmodified	_APAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.73486328125	2	424.734877	847.455202	0.082658	3.5108E-05	-0.16	-6.7956E-05	-0.077339	-3.2849E-05	424.73471132192145	37.208	0.8239	37.144	36.866	37.69	-0.063385					48	22	3	0	0	0	0.42912	2	2996	2996;3009		93.195	13.756	1	4134200			3040	2767	1802	1808	3983;3984	3983					0.025372465545160594
APAYSRAL	8	Unmodified	_APAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.7347717285156	2	424.734877	847.455202	0.30764	0.00013067	-0.34584	-0.00014689	-0.0382	-1.6225E-05	424.7346133443939	37.316	0.85363	37.348	37.035	37.889	0.032269					49	22	3	0	0	0	0.42912	3	2965	2965;2975;2990		93.195	24.711	1	3411400			3041	2767	1802	1808	3985;3986;3987	3985					0.025372465545160594
APDDTAAADGR	11	Unmodified	_APDDTAAADGR_					0	0	0			REV__nc|ENSG00000142002|Q86TI2|DPP9	REV__nc|ENSG00000142002|Q86TI2|DPP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2415771484375	2	530.238709	1058.46287	0.56784	0.00030109	3.7805	0.0020046	4.3483	0.0023056	530.2406059221765	110.55	1.0768	110.4	109.91	110.98	-0.1469					89	41	3	0	0	0	1.0483	1	13548	13548		25.574	2.5316	1	70861	+		3042	24130	1803	1809	3988	3988					-0.06402690706522662
APDFRVVL	8	Unmodified	_APDFRVVL_					0	0	0			REV__ENSG00000215193|ENST00000399744|PEX26	REV__ENSG00000215193|ENST00000399744|PEX26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	458.766178	915.517802	-0.33192	-0.00015228	3.3283	0.0015269	2.9964	0.0013746	458.7709173047055	26.471	0.36877	26.448	26.283	26.652	-0.023088					11	8	2	0	0	0	0.027866	1	1367	1367		79.939	19.645	1	26917	+		3043	28802	1804	1810	3989	3989					0.05666392622708827
APDGSGRLQL	10	Unmodified	_APDGSGRLQL_					0	0	0			REV__ENST00000373188.6_1_6:39883834-39902097:-|nuORF	REV__ENST00000373188.6_1_6:39883834-39902097:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.27191162109375	2	507.272355	1012.53016	-0.47358	-0.00024023	-0.10423	-5.2873E-05	-0.57781	-0.00029311	507.2721522921695	35.717	0.96012	35.761	35.42	36.38	0.04406					36	25	2	0	0	0	0.75651	1	2732	2732		63.534	1.8426	1	2538200	+		3044	31240	1805	1811	3990	3990					0.024393842950985345
APDGSQRAVL	10	Unmodified	_APDGSQRAVL_					0	0	0		ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.27301025390625	2	507.272355	1012.53016	-1.1318	-0.00057411	0.61084	0.00030986	-0.52091	-0.00026424	507.27255864562136	35.88	0.80292	35.88	35.531	36.334	0					50	21	4	0	0	0	0.70466	1	2787	2787		66.962	5.2706	1	2506900			3045	5082	1806	1812	3991	3991					0.024393842950985345
APDGSQRAVL	10	Unmodified	_APDGSQRAVL_					0	0	0		ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.27093505859375	2	507.272355	1012.53016	-1.191	-0.00060417	0.96772	0.0004909	-0.22329	-0.00011327	507.2725165051068	35.735	1.0871	35.692	35.366	36.453	-0.042458					63	29	4	0	0	0	0.60734	2	2763	2751;2763		76.17	5.3535	1	2319800			3046	5082	1806	1812	3992;3993	3993					0.024393842950985345
APDGSQRAVL	10	Unmodified	_APDGSQRAVL_					0	0	0		ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.27313232421875	2	507.272355	1012.53016	-0.47358	-0.00024023	-0.10423	-5.2873E-05	-0.57781	-0.00029311	507.2721522921695	35.717	0.96012	35.761	35.42	36.38	0.04406					36	25	2	0	0	0	0.83648	1	2707	2707		58.246	5.1573	1	2538200			3047	5082	1806	1812	3994	3994					0.024393842950985345
APDRFTQP	8	Unmodified	_APDRFTQP_					0	0	0			REV__nc|ENSG00000157540|Q13627-4|DYRK1A	REV__nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.76715087890625	2	466.235242	930.45593	1.0402	0.00048495	2.1053	0.00098156	3.1454	0.0014665	466.2360632937797	33.397	0.87791	33.454	33.176	34.054	0.056568					41	22	2	0	0	0	0.027866	1	2420	2420		45.952	0	1	358360	+		3048	36814	1807	1813	3995	3995					-0.012079587964194616
APDSITWKP	9	Unmodified	_APDSITWKP_					0	0	0		ENSG00000126218|ENST00000375559|F10;ENST00000477269.5_1_13:113777169-113798523:+|nuORF	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29278564453125	2	507.766374	1013.5182	1.1406	0.00057914	0.80172	0.00040709	1.9423	0.00098623	507.7659265092817	74.558	0.54237	74.558	74.215	74.757	0					28	12	3	0	0	0	0.024466	1	9088	9088		47.657	30.292	1	193110			3049	4184	1808	1814	3996	3996					0.01197767551900597
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-1	1	514.2982788085938	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.068	1	35.068	34.568	35.568	0								0	0	0	0.15405	1	2667	2667		80.455	16.247	1				3050	2876	1809	1815	3997	3997					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-1	1	514.2980346679688	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.134	1	35.134	34.634	35.634	0								0	0	0	0.10825	1	2678	2678		90.601	27.295	1				3051	2876	1809	1815	3998	3998					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-1	1	514.2985229492188	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.204	1	35.204	34.704	35.704	0								0	0	0	0.07376	1	2690	2690		98.582	21.735	1				3052	2876	1809	1815	3999	3999					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-2	2	514.2981567382812	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.863	1	34.841	34.341	35.341	-0.021763								0	0	0	0.1192	1	2621	2621		88.177	16.299	1				3053	2876	1809	1815	4000	4000					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-2	2	514.2984008789062	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.915	1	34.893	34.393	35.393	-0.021763								0	0	0	0.10825	1	2629	2629		90.601	13.283	1				3054	2876	1809	1815	4001	4001					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-2	2	514.2981567382812	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.003	1	34.982	34.482	35.482	-0.021763								0	0	0	0.07376	1	2644	2644		98.582	23.539	1				3055	2876	1809	1815	4002	4002					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-3	3	514.2982788085938	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.903	1	34.953	34.453	35.453	0.050255								0	0	0	0.07376	1	2587	2587		98.582	19.131	1				3056	2876	1809	1815	4003	4003					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-3	3	514.2982788085938	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.959	1	35.007	34.507	35.507	0.048939								0	0	0	0.1192	1	2596	2596		88.177	14.202	1				3057	2876	1809	1815	4004	4004					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_39_ClassI_Rep-3	3	514.2987060546875	2	514.298373	1026.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.04	1	35.084	34.584	35.584	0.04406								0	0	0	0.096778	1	2610	2610		93.143	19.169	1				3058	2876	1809	1815	4005	4005					0.0699654770885445
APEAARDVL	9	Unmodified	_APEAARDVL_					0	0	0			REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF	REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.27459716796875	2	471.256174	940.497795	0.60935	0.00028716	-2.4369	-0.0011484	-1.8276	-0.00086125	471.25472827888854	49.063	0.41981	49.063	48.83	49.249	0					16	11	2	0	0	0	0.024477	1	5079	5079		44.117	13.613	1	92425	+		3059	35021	1810	1816	4006	4006					0.025165968920987325
APEAARDVL	9	Unmodified	_APEAARDVL_					0	0	0			REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF	REV__ENST00000555993.6_1_14:71267787-71275967:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.27410888671875	2	471.256174	940.497795	0.18232	8.5918E-05	1.1553	0.00054446	1.3377	0.00063038	471.2564279923137	49.423	0.24887	49.27	49.041	49.29	-0.15277					9	6	2	0	0	0	0.024477	1	5083	5083		44.117	13.613	1	146310	+		3060	35021	1810	1816	4007	4007					0.025165968920987325
APEANVRI	8	Unmodified	_APEANVRI_					0	0	0			REV__ENST00000496015.5_1_14:74759767-74762615:-|nuORF	REV__ENST00000496015.5_1_14:74759767-74762615:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2472839355469	2	435.245609	868.476666	-0.38512	-0.00016762	4.3913	0.0019113	4.0062	0.0017437	435.247343650344	29.183	0.75484	29.186	28.755	29.509	0.0031357					46	18	3	0	0	0	0.77775	1	1769	1769		60.972	2.19	1	2661000	+		3061	22477	1811	1817	4008	4008					0.03716631583245089
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.2322998046875	2	446.232168	890.449782	-1.3306	-0.00059377	0.97569	0.00043539	-0.35493	-0.00015838	446.23262159196605	37.906	0.67599	37.906	37.523	38.199	0					67	19	4	0	0	0	0.14253	6	3137	3116;3125;3137;3150;3163;3176		150.07	66.781	1	24655000			3062	1564;14709;9900	1812	1818	4009;4010;4011;4012;4013;4014	4011					0.0001752297204120623
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.23223876953125	2	446.232168	890.449782	-0.93795	-0.00041854	0.57903	0.00025838	-0.35892	-0.00016016	446.2324347482705	37.84	1.2488	37.758	37.433	38.682	-0.082512					100	34	4	0	0	0	0.14253	6	3097	3086;3097;3109;3122;3134;3149		150.07	75.552	1	22924000			3063	1564;14709;9900	1812	1818	4015;4016;4017;4018;4019;4020	4016					0.0001752297204120623
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.232421875	2	446.232168	890.449782	-1.1014	-0.0004915	0.70401	0.00031415	-0.39743	-0.00017734	446.2324935254973	37.932	1.1756	37.961	37.597	38.773	0.028748					100	32	4	0	0	0	0.14253	5	3070	3059;3070;3082;3094;3107		150.07	73.825	1	21627000			3064	1564;14709;9900	1812	1818	4021;4022;4023;4024;4025	4022					0.0001752297204120623
APELLQLL	8	Unmodified	_APELLQLL_					0	0	0		ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.2615966796875	2	448.776211	895.537869	0.32059	0.00014387	-3.557	-0.0015963	-3.2364	-0.0014524	448.77457263334315	40.842	0.67095	40.842	40.587	41.258	0					24	18	2	0	0	0	0.027866	1	3685	3685		26.796	1.3459	1	533770			3065	4793	1813	1819	4026	4026					0.08592143562668753
APEVPHEL	8	Unmodified	_APEVPHEL_					0	0	0			REV__ENST00000436710.5_1_9:132104148-132104253:+|nuORF	REV__ENST00000436710.5_1_9:132104148-132104253:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	446.2317810058594	2	446.232168	890.449782	0.30845	0.00013764	-1.3943	-0.00062219	-1.0859	-0.00048455	446.23152023452957	101.79	1.2282	101.62	101.15	102.37	-0.17178					92	28	5	0	0	0	1.0572	1	12610	12610		28.254	2.8041	1	4822100	+		3066	32465	1814	1820	4027	4027					0.0001752297204120623
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.81103515625	2	557.810782	1113.60701	-0.14695	-8.1971E-05	0.070941	3.9572E-05	-0.076009	-4.2399E-05	557.8106530851431	89.54	0.91441	89.54	89.061	89.975	0					60	21	4	0	0	0	0.28593	2	11315	11291;11315		90.37	23.941	1	1294500			3067	2395	1815	1821	4028;4029	4029					0.0547518279158794
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.8106079101562	2	557.810782	1113.60701	0.11069	6.1742E-05	-0.13157	-7.3391E-05	-0.020884	-1.1649E-05	557.810514877528	89.512	0.91945	89.49	89.074	89.994	-0.021645					70	21	5	0	0	0	0.32544	3	11266	11255;11266;11279		87.696	26.005	1	1404300			3068	2395	1815	1821	4030;4031;4032	4031					0.0547518279158794
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.8106079101562	2	557.810782	1113.60701	0.29123	0.00016245	-0.49483	-0.00027602	-0.2036	-0.00011357	557.8103283177024	89.56	0.86929	89.576	89.215	90.084	0.015793					66	20	5	0	0	0	0.28593	3	11221	11221;11233;11246		90.37	26.163	1	1589800			3069	2395	1815	1821	4033;4034;4035	4033					0.0547518279158794
APFLGWEQN	9	Unmodified	_APFLGWEQN_					0	0	0		ENST00000558850.5_1_14:102783930-102792533:+|nuORF	ENST00000558850.5_1_14:102783930-102792533:+|nuORF	ENST00000558850.5_1_14:102783930-102792533:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.3007202148438	2	531.256174	1060.49779	-0.68955	-0.00036633	0.37696	0.00020026	-0.31259	-0.00016607	531.2558185391521	31.414	3.7341	31.425	29.559	33.294	0.011799					210	93	5	0	0	0	0.024381	1	1904	1904		55.504	18.345	1	1014400			3070	16761	1816	1822	4036	4036					-0.030034031079139822
APFLKKVI	8	Unmodified	_APFLKKVI_					0	0	0		ENSG00000163735|ENST00000296027|CXCL5;ENSG00000124875|ENST00000226317|CXCL6	ENSG00000163735|ENST00000296027|CXCL5	ENSG00000163735|ENST00000296027|CXCL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.7637634277344	2	458.304939	914.595324	0.3548	0.00016261	3.7735	0.0017294	4.1283	0.001892	458.30662524570147	23.146	0.82618	22.944	22.453	23.279	-0.20193					26	17	3	0	0	0	0.027866	1	931	931		39.021	0	1	364470			3071	4082	1817	1823	4037	4037					0.13461030558880793
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.8031616210938	2	529.803291	1057.59203	0.34537	0.00018298	-0.81232	-0.00043037	-0.46695	-0.00024739	529.8029255474509	64.145	1.0992	64.145	63.81	64.909	0					60	29	4	0	0	0	0.067814	6	7559	7514;7525;7536;7547;7559;7573		122.18	50.299	1	28555000			3072	4087	1818	1824	4038;4039;4040;4041;4042;4043	4042					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8031005859375	2	529.803291	1057.59203	-0.76064	-0.00040299	0.273	0.00014464	-0.48764	-0.00025835	529.803455936841	64.396	1.1565	64.133	63.754	64.911	-0.2626					63	30	4	0	0	0	0.03849	6	7559	7523;7535;7547;7559;7571;7584		134.81	48.949	1	29012000			3073	4087	1818	1824	4044;4045;4046;4047;4048;4049	4047					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.8028564453125	2	529.803291	1057.59203	0.89049	0.00047179	-1.6401	-0.00086893	-0.74961	-0.00039715	529.8024816723686	64.122	1.1088	64.168	63.867	64.975	0.045502					62	29	5	0	0	0	0.082191	5	7446	7435;7446;7458;7469;7481		116.9	35.865	1	30613000			3074	4087	1818	1824	4050;4051;4052;4053;4054	4051					0.06553735714237519
APFLWYYLVCL	11	Unmodified	_APFLWYYLVCL_					0	0	0			REV__nc|ENSG00000186001|Q96II8-2|LRCH3	REV__nc|ENSG00000186001|Q96II8-2|LRCH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7714538574219	3	463.242149	1386.70462	-0.69793	-0.00032331	-3.9899	-0.0018483	-4.6879	-0.0021716	463.2402579260842	25.024	0.767	25.024	24.518	25.285	0					36	17	3	0	0	0	0.024839	1	1143	1143		10.587	0	1	178410	+		3075	37020	1819	1825	4055	4055					0.02673248396058625
APFRKDSDY	9	Unmodified	_APFRKDSDY_					0	0	0			REV__nc|ENSG00000100884|O95741-2|CPNE6	REV__nc|ENSG00000100884|O95741-2|CPNE6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.7728881835938	2	549.764363	1097.51417	-0.31472	-0.00017302	2.7791	0.0015278	2.4644	0.0013548	550.2662045037009	35.722	0.27069	35.509	35.314	35.584	-0.21246					14	6	3	0	0	0	0.024436	1	2737	2737		38.806	17.859	1	183430	+		3076	36524	1820	1826	4056	4056					-0.030683219418278895
APFRKDSDY	9	Unmodified	_APFRKDSDY_					0	0	0			REV__nc|ENSG00000100884|O95741-2|CPNE6	REV__nc|ENSG00000100884|O95741-2|CPNE6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	549.764363	1097.51417	-1.1921	-0.00065538	4.026	0.0022134	2.8339	0.001558	550.2671475617842	35.858	0.27224	35.858	35.687	35.96	0	0.17431	0.00077604	NaN	38.806	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114840	+		3077	36524	1820	1826							-0.030683219418278895
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-2|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.32403564453125	2	505.289485	1008.56442	-0.30182	-0.00015251	0.97298	0.00049164	0.67115	0.00033913	505.290185602564	66.359	0.4548	66.077	65.826	66.281	-0.28149					24	11	3	0	0	0	0.024389	1	7839	7839		35.152	0	1	1462700			3078	8059;3830	1821	1827	4057	4057					0.06047832453987212
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-2|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.289485	1008.56442	-0.11933	-6.0295E-05	-0.12217	-6.1731E-05	-0.2415	-0.00012203	505.28938808964386	66.072	0.3461	66.102	65.89	66.237	0.030106	0.027046	2.7974E-05	NaN	75.043	25	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1428700			3079	8059;3830	1821	1827							0.06047832453987212
APFSTKPGKK	10	Unmodified	_APFSTKPGKK_					0	0	0		ENSG00000088727|ENST00000684063|KIF9;ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9	ENSG00000088727|ENST00000684063|KIF9	ENSG00000088727|ENST00000684063|KIF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.809814453125	2	530.811116	1059.60768	-0.638	-0.00033866	-2.3194	-0.0012311	-2.9574	-0.0015698	530.8099182997815	17.645	1.0932	17.439	17.216	18.309	-0.20669					51	21	5	0	0	0	1.0616	1	191	191		37.812	4.9991	1	1940000			3080	1872	1822	1828	4058	4058					0.08026022231297247
APGADRHFA	9	Unmodified	_APGADRHFA_					0	0	0			REV__ENST00000476975.5_1_2:97498263-97499261:-|nuORF	REV__ENST00000476975.5_1_2:97498263-97499261:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.27459716796875	2	471.233033	940.451513	0.48017	0.00022627	-2.0044	-0.00094454	-1.5242	-0.00071827	471.23198607086795	48.97	0.56387	48.97	48.761	49.324	0					23	15	2	0	0	0	0.024487	1	5079	5079		31.955	0	1	217240	+		3081	33319	1823	1829	4059	4059					-0.021094232193490825
APGAKVPSL	9	Unmodified	_APGAKVPSL_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.2528381347656	2	420.252903	838.491253	-0.25165	-0.00010576	0.24659	0.00010363	-0.0050619	-2.1273E-06	420.2529137833623	45.292	0.97987	45.292	45.006	45.986	0					63	28	3	0	0	0	0.096521	1	4379	4379		111.65	10.048	1	8314800	+		3082	20075	1824	1830	4060	4060					0.06554703731376321
APGAKVPSL	9	Unmodified	_APGAKVPSL_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.2529602050781	2	420.252903	838.491253	-0.42167	-0.00017721	0.46644	0.00019602	0.044772	1.8815E-05	420.2529804530528	45.404	0.85166	45.255	44.974	45.825	-0.1488					73	24	5	0	0	0	0.096521	2	4379	4379;4401		111.65	13.019	1	8184900	+		3083	20075	1824	1830	4061;4062	4061					0.06554703731376321
APGAKVPSL	9	Unmodified	_APGAKVPSL_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.2532653808594	2	420.252903	838.491253	-0.0057165	-2.4024E-06	0.18762	7.8849E-05	0.18191	7.6447E-05	420.25288043741466	45.279	0.9201	45.323	45.038	45.958	0.04388					71	26	4	0	0	0	0.096521	3	4315	4315;4339;4351		111.65	8.8749	1	7697300	+		3084	20075	1824	1830	4063;4064;4065	4063					0.06554703731376321
APGALCDLSEP	11	Unmodified	_APGALCDLSEP_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2940063476562	2	536.752607	1071.49066	-0.7288	-0.00039119	-0.49628	-0.00026638	-1.2251	-0.00065756	536.7518921336496	63.158	0.87128	63.158	62.938	63.81	0					38	23	3	0	0	0	0.024762	1	7387	7387		23.523	10.069	1	588460	+		3085	23266	1825	1831	4066	4066					-0.04222503770665753
APGANAAGAAH	11	Unmodified	_APGANAAGAAH_					0	0	0			REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	REV__nc|ENSG00000176973|Q8N5H3-4|FAM89B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7818603515625	2	454.222665	906.430778	-0.022437	-1.0191E-05	-1.3372	-0.00060739	-1.3596	-0.00061758	454.222015608065	44.912	0.62924	44.956	44.585	45.214	0.04388					23	17	2	0	0	0	0.024749	1	4223	4223		21.96	0	1	123170	+		3086	27069	1826	1832	4067	4067					-0.026180135990216513
APGDAALPEP	10	Unmodified	_APGDAALPEP_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7517395019531	2	469.234907	936.455261	-0.054693	-2.5664E-05	0.99121	0.00046511	0.93651	0.00043944	469.23489697922844	54.18	0.68481	54.18	53.907	54.591	0					53	19	4	0	0	0	0.03519	1	5927	5927		54.776	12.38	1	1265900			3087	885	1827	1833	4068	4068					-0.01550798236155515
APGGEPLNI	9	Unmodified	_APGGEPLNI_					0	0	0		ENST00000292174.4_1_11:118754485-118754617:+|nuORF	ENST00000292174.4_1_11:118754485-118754617:+|nuORF	ENST00000292174.4_1_11:118754485-118754617:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.232168	866.449782	0.36188	0.00015714	-0.68045	-0.00029547	-0.31857	-0.00013833	434.2305379757302	42.504	0.18192	42.531	42.459	42.641	0.026012					5	4	2	0	0	0	0.024292	1	3864	3864		19.104	1.7386	1	20468			3088	11802	1828	1834	4069	4069					0.011215229720392017
APGGTQMKKK	10	Unmodified	_APGGTQMKKK_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2924194335938	2	523.294776	1044.575	-0.27124	-0.00014194	-3.0783	-0.0016109	-3.3496	-0.0017528	523.2929733747247	19.262	0.64131	19.144	18.854	19.495	-0.11872					31	12	3	0	0	0	0.96965	1	385	385		49.442	1.5259	1	176730			3089	2431	1829	1835	4070	4070					0.05449491836770903
APGHPGGHL	9	Unmodified	_APGHPGGHL_					0	0	0		ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7396545410156	2	421.717019	841.419485	-0.43072	-0.00018164	3.4466	0.0014535	3.0159	0.0012718	421.7183776218134	23.056	0.31177	23.056	22.894	23.206	0					9	6	2	0	0	0	0.024389	1	861	861		29.842	8.1392	1	54894			3090	12795	1830	1836	4071	4071					-0.007567909024828623
APGHPGGHL	9	Unmodified	_APGHPGGHL_					0	0	0		ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	421.717019	841.419485	-0.4856	-0.00020479	4.4353	0.0018704	3.9497	0.0016656	421.71827268139623	22.881	0.55311	22.955	22.559	23.112	0.073954	-0.052742	0.003233	NaN	29.842	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45894			3091	12795	1830	1836							-0.007567909024828623
APGHPGGHL	9	Unmodified	_APGHPGGHL_					0	0	0		ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	421.717019	841.419485	0.36993	0.00015601	-0.20759	-8.7546E-05	0.16233	6.8459E-05	421.71683169073816	23.146	0.65362	22.944	22.499	23.153	-0.20193	-0.063765	-0.00068295	NaN	29.842	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89176			3092	12795	1830	1836							-0.007567909024828623
APGHPGGHL	9	Unmodified	_APGHPGGHL_					0	0	0		ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	ENST00000361361.6_1_1:155223944-155224582:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	421.717019	841.419485	-0.24903	-0.00010502	0.78039	0.0003291	0.53136	0.00022409	421.71725081979724	23.255	0.53744	23.075	22.743	23.281	-0.17989	0.067856	0.00015035	NaN	29.842	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115370			3093	12795	1830	1836							-0.007567909024828623
APGKGLVWV	9	Unmodified	_APGKGLVWV_					0	0	0		nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74	nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74	nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.23004150390625	2	463.776545	925.538538	-0.20138	-9.3394E-05	-3.858	-0.0017893	-4.0594	-0.0018826	463.7745808023339	39.727	0.59657	39.751	39.455	40.052	0.023727					31	16	3	0	0	0	0.024535	1	3342	3342		18.324	9.1415	1	883330			3094	18732	1831	1837	4072	4072					0.07278983002368022
APGKGPPAL	9	Unmodified	_APGKGPPAL_					0	0	0		ENST00000572045.5_1_16:3017763-3018018:+|nuORF;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	ENST00000572045.5_1_16:3017763-3018018:+|nuORF	ENST00000572045.5_1_16:3017763-3018018:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.24017333984375	2	404.239796	806.465038	0.59823	0.00024183	-0.33621	-0.00013591	0.26202	0.00010592	404.2395099381967	35.034	0.86295	35.034	34.668	35.531	0					67	22	4	0	0	0	0.11848	3	2643	2643;2654;2665		106.42	26.476	1	3289600			3095	4538	1832	1838	4073;4074;4075	4073					0.054064345598817454
APGKGPPAL	9	Unmodified	_APGKGPPAL_					0	0	0		ENST00000572045.5_1_16:3017763-3018018:+|nuORF;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	ENST00000572045.5_1_16:3017763-3018018:+|nuORF	ENST00000572045.5_1_16:3017763-3018018:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.23980712890625	2	404.239796	806.465038	-0.17665	-7.1409E-05	0.46868	0.00018946	0.29203	0.00011805	404.2397992058949	34.869	0.91349	34.847	34.513	35.426	-0.021763					67	23	3	0	0	0	0.15889	2	2618	2608;2618		97.473	26.095	1	3173000			3096	4538	1832	1838	4076;4077	4077					0.054064345598817454
APGKGPPAL	9	Unmodified	_APGKGPPAL_					0	0	0		ENST00000572045.5_1_16:3017763-3018018:+|nuORF;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2	ENST00000572045.5_1_16:3017763-3018018:+|nuORF	ENST00000572045.5_1_16:3017763-3018018:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.2401428222656	2	404.239796	806.465038	1.4485	0.00058555	-1.1482	-0.00046413	0.30035	0.00012141	404.2391525689565	34.87	1.1027	34.92	34.479	35.581	0.050255					71	28	4	0	0	0	0.10076	2	2576	2576;2585		110.34	27.05	1	2879200			3097	4538	1832	1838	4078;4079	4078					0.054064345598817454
APGKRILVL	9	Unmodified	_APGKRILVL_					0	0	0		nc|ENSG00000151657|O60870-2|KIN;ENSG00000151657|ENST00000379562|KIN	nc|ENSG00000151657|O60870-2|KIN	nc|ENSG00000151657|O60870-2|KIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.77081298828125	2	483.826569	965.638586	-0.34861	-0.00016867	0.44746	0.00021649	0.09885	4.7826E-05	483.82659793758603	43.039	0.65437	43.039	42.786	43.44	0					41	17	3	0	0	0	0.024506	1	4024	4024		23.042	4.7181	1	1439600			3098	6217	1833	1839	4080	4080					0.1543922033616809
APGKRILVL	9	Unmodified	_APGKRILVL_					0	0	0		nc|ENSG00000151657|O60870-2|KIN;ENSG00000151657|ENST00000379562|KIN	nc|ENSG00000151657|O60870-2|KIN	nc|ENSG00000151657|O60870-2|KIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7703552246094	2	483.826569	965.638586	0.12549	6.0717E-05	-0.23447	-0.00011344	-0.10898	-5.2727E-05	483.8262576141221	43.194	0.65434	43.225	42.939	43.593	0.030827					45	17	4	0	0	0	0.024541	1	3980	3980		10.866	0	1	1262200			3099	6217	1833	1839	4081	4081					0.1543922033616809
APGKSAPLE	9	Unmodified	_APGKSAPLE_					0	0	0			REV__ENSG00000166246|ENST00000299320|DNAAF8	REV__ENSG00000166246|ENST00000299320|DNAAF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7718505859375	2	435.239993	868.465432	-0.4445	-0.00019347	0.2422	0.00010542	-0.2023	-8.8049E-05	435.24032444031667	25.417	0.68446	25.417	25.052	25.737	0					23	16	2	0	0	0	0.024374	1	1211	1211		58.782	30.9	1	39093	+		3100	25994	1834	1840	4082	4082					0.025938094890875618
APGKSAPLE	9	Unmodified	_APGKSAPLE_					0	0	0			REV__ENSG00000166246|ENST00000299320|DNAAF8	REV__ENSG00000166246|ENST00000299320|DNAAF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.239993	868.465432	-0.11899	-5.1789E-05	-7.1197	-0.0030988	-7.2387	-0.0031506	435.2368582446221	25.615	0.2112	25.444	25.288	25.499	-0.17078	0.013633	-0.0061786	NaN	68.787	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27582	+		3101	25994	1834	1840							0.025938094890875618
APGLGAREP	9	Unmodified	_APGLGAREP_					0	0	0			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.2561340332031	2	434.237784	866.461016	-0.83527	-0.0003627	0.56132	0.00024375	-0.27395	-0.00011896	434.2379789105962	44.183	0.39494	44.183	44.022	44.417	0					14	11	2	0	0	0	0.024386	1	4195	4195		18.324	4.5491	1	182730	+		3102	20774	1835	1841	4083	4083					0.022443450661853603
APGLRATR	8	Unmodified	_APGLRATR_					0	0	0			REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.2545166015625	2	421.253769	840.492984	0.65952	0.00027783	-0.32351	-0.00013628	0.33601	0.00014154	421.2534826375198	83.667	1.0631	83.498	83.119	84.182	-0.16915					54	24	3	0	0	0	1.0574	1	10129	10129		25.45	0	1	627860	+		3103	31713	1836	1842	4084	4084					0.06635757539970655
APGLRGFR	8	Unmodified	_APGLRGFR_					0	0	0		nc|ENSG00000115286|O75251-2|NDUFS7;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;ENST00000545446.5_1_19:1383907-1388593:+|nuORF;ENST00000538662.5_1_19:1383907-1391085:+|nuORF;ENST00000436115.6_1_19:1383907-1389591:+|nuORF	nc|ENSG00000115286|O75251-2|NDUFS7	nc|ENSG00000115286|O75251-2|NDUFS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2462158203125	2	437.256311	872.49807	-0.4804	-0.00021006	0.17967	7.8563E-05	-0.30073	-0.00013149	437.25628776422127	28.008	0.84502	28.008	27.726	28.571	0					23	20	2	0	0	0	0.027866	1	1610	1610		52.299	15.271	1	97712			3104	3427	1837	1843	4085	4085					0.05672061402606232
APGNGQRSL	9	Unmodified	_APGNGQRSL_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L;BCL9L|p.G481Afs*21|1|0.28|ENSG00000186174|chr11:118902301-118902301|C/-|frameshift_variant;BCL9L|p.H931Afs*8|1|0.49|ENSG00000186174|chr11:118900952-118900953|-/C|frameshift_variant;nc|ENSG00000186174|Q86UU0-4|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2405700683594	2	450.238316	898.462078	-0.66064	-0.00029744	-0.22611	-0.0001018	-0.88674	-0.00039925	450.2382204597854	23.894	1.5802	23.847	23.528	25.108	-0.047146					84	35	4	0	0	0	0.30449	2	1012	1012;1024		75.043	30.927	1	7469800			3105	9523	1838	1844	4086;4087	4086					0.00878559435079751
APGNRSLNAAM	11	Unmodified	_APGNRSLNAAM_					0	0	0			REV__ENST00000439983.5_1_7:44084336-44089926:+|nuORF	REV__ENST00000439983.5_1_7:44084336-44089926:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.808349609375	2	551.277115	1100.53968	0.04096	2.258E-05	-0.64484	-0.00035549	-0.60388	-0.00033291	551.2774804087857	56.72	1.3681	56.495	55.878	57.246	-0.22479					98	35	5	0	0	0	0.024756	1	6077	6077		52.937	25.054	1	606690	+		3106	23646	1839	1845	4088	4088					-0.006571706910335706
APGPAPARL	9	Unmodified	_APGPAPARL_					0	0	0		ENST00000259351.9_1_9:129677090-129724543:+|nuORF	ENST00000259351.9_1_9:129677090-129724543:+|nuORF	ENST00000259351.9_1_9:129677090-129724543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.73480224609375	2	425.250695	848.486836	0.24986	0.00010625	-0.48152	-0.00020476	-0.23166	-9.8512E-05	425.25008296555626	37.326	0.5987	37.359	37.189	37.787	0.032269					22	15	2	0	0	0	0.024262	1	3002	3002		30.504	6.3009	1	90834			3107	11434	1840	1846	4089	4089					0.05653239308469438
APGPAPARL	9	Unmodified	_APGPAPARL_					0	0	0		ENST00000259351.9_1_9:129677090-129724543:+|nuORF	ENST00000259351.9_1_9:129677090-129724543:+|nuORF	ENST00000259351.9_1_9:129677090-129724543:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	425.250695	848.486836	0.25282	0.00010751	2.6424	0.0011237	2.8952	0.0012312	425.2510662344139	37.564	0.39259	37.371	37.076	37.469	-0.193	0.043858	0.001341	NaN	30.504	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79932			3108	11434	1840	1846							0.05653239308469438
APGPAPARL	9	Unmodified	_APGPAPARL_					0	0	0		ENST00000259351.9_1_9:129677090-129724543:+|nuORF	ENST00000259351.9_1_9:129677090-129724543:+|nuORF	ENST00000259351.9_1_9:129677090-129724543:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	425.250695	848.486836	-0.54731	-0.00023274	5.509	0.0023427	4.9617	0.00211	425.25101400396983	37.579	0.35823	37.369	37.114	37.472	-0.2092	0.042667	0.003779	NaN	30.504	19	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98905			3109	11434	1840	1846							0.05653239308469438
APGPGRKEL	9	Unmodified	_APGPGRKEL_					0	0	0		nc|ENSG00000139725|Q9HBH0-2|RHOF;ENSG00000139725|ENST00000267205|RHOF	nc|ENSG00000139725|Q9HBH0-2|RHOF	nc|ENSG00000139725|Q9HBH0-2|RHOF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7687072753906	2	462.766709	923.518865	-0.46181	-0.00021371	1.0446	0.00048339	0.58275	0.00026968	462.7670283708067	23.827	0.34226	23.827	23.694	24.036	0					21	7	3	0	0	0	0.39228	1	980	980		66.429	6.1353	1	799120			3110	5363	1841	1847	4090	4090					0.054046069916125816
APGPGRKEL	9	Unmodified	_APGPGRKEL_					0	0	0		nc|ENSG00000139725|Q9HBH0-2|RHOF;ENSG00000139725|ENST00000267205|RHOF	nc|ENSG00000139725|Q9HBH0-2|RHOF	nc|ENSG00000139725|Q9HBH0-2|RHOF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7681579589844	2	462.766709	923.518865	-0.75776	-0.00035067	2.2207	0.0010277	1.4629	0.000677	462.76779100937114	23.797	0.51852	23.736	23.6	24.119	-0.06086					26	11	4	0	0	0	0.53979	1	983	983		56.721	7.2795	1	764380			3111	5363	1841	1847	4091	4091					0.054046069916125816
APGPMHFI	8	Unmodified	_APGPMHFI_					0	0	0		ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2187194824219	2	435.220549	868.426544	-0.85726	-0.0003731	-3.6356	-0.0015823	-4.4929	-0.0019554	435.218881222459	30.465	0.98424	30.465	29.936	30.92	0					49	23	3	0	0	0	0.69959	1	1958	1958		67.327	12.433	1	844770			3112	12095	1842	1848	4092	4092					-0.012931943462717754
APGPMHFI	8	Unmodified	_APGPMHFI_					0	0	0		ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.21905517578125	2	435.220549	868.426544	-0.34104	-0.00014843	-3.9469	-0.0017178	-4.288	-0.0018662	435.2188541055558	30.416	1.1145	30.424	29.839	30.953	0.0086708					70	26	5	0	0	0	0.69959	1	1936	1936		67.327	5.2198	1	1052400			3113	12095	1842	1848	4093	4093					-0.012931943462717754
APGPMHFI	8	Unmodified	_APGPMHFI_					0	0	0		ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2187805175781	2	435.220549	868.426544	-0.62137	-0.00027043	-3.6055	-0.0015692	-4.2269	-0.0018396	435.2189887299517	30.128	1.0297	30.203	29.72	30.75	0.074314					54	24	3	0	0	0	0.8525	1	1854	1854		54.895	1.9579	1	979980			3114	12095	1842	1848	4094	4094					-0.012931943462717754
APGPRLVEAD	10	Unmodified	_APGPRLVEAD_					0	0	0			REV__ENST00000383686.2_1_3:110611078-110612293:-|nuORF	REV__ENST00000383686.2_1_3:110611078-110612293:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2353515625	2	512.774731	1023.53491	-0.66211	-0.00033951	-3.6564	-0.0018749	-4.3185	-0.0022144	512.7728453532761	57.327	0.40153	57.16	56.967	57.369	-0.1672					18	10	2	0	0	0	0.03519	1	6276	6276		42.396	1.618	1	218970	+		3115	31552	1843	1849	4095	4095					0.02408268437852712
APGPRPPQP	9	Unmodified	_APGPRPPQP_					0	0	0		ENST00000514541.1_1_4:15661507-15683068:-|nuORF	ENST00000514541.1_1_4:15661507-15683068:-|nuORF	ENST00000514541.1_1_4:15661507-15683068:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2454833984375	2	458.753601	915.49265	-0.44913	-0.00020604	3.7675	0.0017283	3.3183	0.0015223	458.75537579489367	27.018	0.25133	26.85	26.68	26.931	-0.16816					7	5	2	0	0	0	0.024294	1	1434	1434		21.96	0	1	35476			3116	15883	1844	1850	4096	4096					0.03152337820131379
APGPRPQGL	9	Unmodified	_APGPRPQGL_					0	0	0			REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.89642333984375	2	446.753601	891.49265	-0.041089	-1.8357E-05	0.31795	0.00014204	0.27686	0.00012369	446.7535803711184	23.857	0.5834	23.933	23.734	24.317	0.076241					17	12	2	0	0	0	0.024466	1	965	965		25.45	0	1	34375	+		3117	20480	1845	1851	4097	4097					0.042563378201293744
APGPRPVL	8	Unmodified	_APGPRPVL_					0	0	0			REV__ENSG00000188032|ENST00000548523|C19orf67	REV__ENSG00000188032|ENST00000548523|C19orf67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5548095703125	2	403.747788	805.481023	0.2733	0.00011034	-1.8629	-0.00075214	-1.5896	-0.0006418	403.74747976490545	22.556	0.46014	22.37	22.047	22.507	-0.18539					16	9	3	0	0	0	0.027866	1	789	789		21.702	0	1	18012	+		3118	28001	1846	1852	4098	4098					0.07050140796798132
APGPSRAPAL	10	Unmodified	_APGPSRAPAL_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.76654052734375	2	468.766709	935.518865	0.74498	0.00034922	-0.52731	-0.00024718	0.21768	0.00010204	468.7661908310874	36.825	1.2615	36.825	36.44	37.702	0					76	33	4	0	0	0	0.40067	1	2949	2949		98.629	5.4861	1	2155700	+		3119	27278	1847	1853	4099	4099					0.048526069916078995
APGPSRAPAL	10	Unmodified	_APGPSRAPAL_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.7667541503906	2	468.766709	935.518865	0.31011	0.00014537	-0.20047	-9.3973E-05	0.10964	5.1398E-05	468.7663648896812	36.785	0.90552	36.823	36.478	37.383	0.038044					52	23	3	0	0	0	0.55353	1	2893	2893		82.241	2.5279	1	2054800	+		3120	27278	1847	1853	4100	4100					0.048526069916078995
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(85)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7523193359375	2	472.752744	943.490935	0.32755	0.00015485	-0.20172	-9.5366E-05	0.12582	5.9484E-05	472.7525201677085	34.069	0.9668	34.069	33.662	34.629	0					63	24	3	0	0	0	0.22754	2	2511	2498;2511		85.359	27.548	1	2361000			3121	1476;13528	1848	1854	4101;4102	4102		48			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(71)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MSMS	OPSCC_39_ClassI_Rep-1	1	472.7537841796875	2	472.752744	943.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.817	1	35.817	35.317	36.317	0								0	0	0	0.25637	1	2786	2786		71.296	23.38	1				3122	1476;13528	1848	1854	4103	4103		48			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(110)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.75238037109375	2	472.752744	943.490935	0.25604	0.00012104	-0.019099	-9.0289E-06	0.23694	0.00011201	472.75257117457306	33.892	0.92926	33.888	33.523	34.452	-0.0045624					69	23	4	0	0	0	0.11848	3	2489	2459;2477;2489		106.42	37.931	1	2226300			3123	1476;13528	1848	1854	4104;4105;4106	4106		48			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(97)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7531433105469	2	472.752744	943.490935	-0.60416	-0.00028562	0.32734	0.00015475	-0.27682	-0.00013087	472.753009170357	35.653	1.9345	35.62	34.423	36.358	-0.033596					75	51	2	0	0	0	0.15889	2	2758	2747;2758		97.473	37.179	1	1591100			3124	1476;13528	1848	1854	4107;4108	4108		48			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(94)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7518005371094	2	472.752744	943.490935	0.12311	5.8198E-05	0.20506	9.6945E-05	0.32817	0.00015514	472.75269326125584	33.886	1.1025	33.942	33.461	34.564	0.056568					71	27	4	0	0	0	0.17455	3	2426	2413;2426;2437		94.006	36.195	1	2206900			3125	1476;13528	1848	1854	4109;4110;4111	4110		48			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(94)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7531433105469	2	472.752744	943.490935	-0.054064	-2.5559E-05	-0.054534	-2.5781E-05	-0.1086	-5.134E-05	472.7527296029969	35.8	1.9998	35.844	34.551	36.551	0.04406					77	53	2	0	0	0	0.17455	2	2714	2714;2726		94.006	25.522	1	1799300			3126	1476;13528	1848	1854	4112;4113	4112		48			0.016929607398878943
APGRAQPL	8	Unmodified	_APGRAQPL_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.2350769042969	2	405.235045	808.455536	-0.05399	-2.1879E-05	1.9196	0.00077788	1.8656	0.000756	405.23510615850915	32.741	1.2768	32.749	31.98	33.257	0.0080605					73	33	4	0	0	0	0.34196	1	2285	2285		105.27	9.2211	1	1767100	+		3127	37146	1849	1855	4114	4114					0.04364666274364026
APGRAQPL	8	Unmodified	_APGRAQPL_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	405.235045	808.455536	0.48667	0.00019722	1.1283	0.00045723	1.615	0.00065444	405.23488600021057	32.877	1.0959	32.877	32.494	33.59	0	0.11238	9.577E-06	NaN	105.27	68	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1632100	+		3128	37146	1849	1855							0.04364666274364026
APGRAQPL	8	Unmodified	_APGRAQPL_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	405.235045	808.455536	-0.05399	-2.1879E-05	1.9196	0.00077788	1.8656	0.000756	405.23510615850915	32.741	1.2768	32.749	31.98	33.257	0.0080605	-0.016139	0.00065088	NaN	105.27	73	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1767100	+		3129	37146	1849	1855							0.04364666274364026
APGRAQPL	8	Unmodified	_APGRAQPL_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	405.235045	808.455536	1.8001	0.00072946	0.054532	2.2098E-05	1.8546	0.00075156	405.23438022697025	32.606	0.94393	32.669	32.238	33.182	0.062885	-0.09624	-0.00086068	NaN	105.27	74	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1615500	+		3130	37146	1849	1855							0.04364666274364026
APGRAQPLF	9	Unmodified	_APGRAQPLF_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7685852050781	2	478.769252	955.52395	-0.31637	-0.00015147	-1.1299	-0.00054095	-1.4462	-0.00069242	478.7684856661991	28.472	1.3363	28.472	27.924	29.26	0					80	32	3	0	0	0	0.29104	1	1664	1664		76.847	10.417	1	1692200	+		3131	37146	1850	1856	4115	4115					0.044409108542254216
APGRAQPLF	9	Unmodified	_APGRAQPLF_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7688293457031	2	478.769252	955.52395	-0.23067	-0.00011044	-1.4329	-0.00068601	-1.6635	-0.00079645	478.7683058480066	28.438	1.4306	28.434	27.692	29.122	-0.0042					81	34	3	0	0	0	0.67308	1	1641	1641		47.916	7.343	1	1353000	+		3132	37146	1850	1856	4116	4116					0.044409108542254216
APGRAQPLF	9	Unmodified	_APGRAQPLF_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	478.769252	955.52395	-0.31637	-0.00015147	-1.1299	-0.00054095	-1.4462	-0.00069242	478.7684856661991	28.472	1.3363	28.472	27.924	29.26	0	0.090397	0.00026273	NaN	76.847	80	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1692200	+		3133	37146	1850	1856							0.044409108542254216
APGRDATDQ	9	Unmodified	_APGRDATDQ_					0	0	0		ENSG00000177459|ENST00000318528|ERICH5	ENSG00000177459|ENST00000318528|ERICH5	ENSG00000177459|ENST00000318528|ERICH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2359619140625	2	465.717413	929.420273	0.34376	0.0001601	-0.53984	-0.00025141	-0.19608	-9.1318E-05	465.71777453255845	29.144	0.43087	29.222	28.979	29.41	0.078344					11	10	2	0	0	0	0.024337	1	1704	1704		41.427	13.544	1	75027			3134	8740	1851	1857	4117	4117					-0.04726041044091289
APGRLARLL	9	Unmodified	_APGRLARLL_					0	0	0		nc|ENSG00000286175|A0A494C0N9|FAM246B;nc|ENSG00000286102|A0A494C0Y3|FAM246A	nc|ENSG00000286175|A0A494C0N9|FAM246B	nc|ENSG00000286175|A0A494C0N9|FAM246B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7708435058594	2	483.813993	965.613434	-0.5223	-0.0002527	0.41695	0.00020172	-0.10535	-5.0972E-05	483.8139571689746	43.353	0.33038	43.213	43.063	43.393	-0.13929					13	8	2	0	0	0	0.024535	1	4028	4028		12.207	0	1	114410			3135	18816	1852	1858	4118	4118					0.1292516553361338
APGRPGLTP	9	Unmodified	_APGRPGLTP_					0	0	0		ENST00000269299.7_1_17:7077367-7077695:-|nuORF	ENST00000269299.7_1_17:7077367-7077695:-|nuORF	ENST00000269299.7_1_17:7077367-7077695:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.25885009765625	2	433.248152	864.481751	-0.51764	-0.00022427	1.2487	0.00054101	0.7311	0.00031675	433.24859480039834	35.202	1.0852	35.202	34.944	36.029	0					42	28	2	0	0	0	0.024294	1	2779	2779		45.952	13.997	1	179710			3136	11634	1853	1859	4119	4119					0.04408935445837869
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.77197265625	2	462.772326	923.530098	-0.42768	-0.00019792	-0.7246	-0.00033533	-1.1523	-0.00053324	462.77208530882194	23.268	1.7621	23.268	22.06	23.822	0					129	39	5	0	0	0	0.35646	6	876	876;888;899;911;931;949		68.787	24.67	1	25537000			3137	9487	1854	1860	4120;4121;4122;4123;4124;4125	4120					0.0652742908575874
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7723083496094	2	462.772326	923.530098	-0.45765	-0.00021179	-0.66082	-0.00030581	-1.1185	-0.0005176	462.7721200636258	23.276	1.6306	23.215	22.097	23.727	-0.06086					124	36	5	0	0	0	0.31247	5	908	867;889;908;920;953		73.975	17.451	1	26985000			3138	9487	1854	1860	4126;4127;4128;4129;4130	4128					0.0652742908575874
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7725524902344	2	462.772326	923.530098	0.057704	2.6704E-05	-1.3148	-0.00060846	-1.2571	-0.00058176	462.7718333719379	23.177	1.607	23.253	22.127	23.734	0.076241					117	35	4	0	0	0	0.20967	7	883	815;827;850;869;883;894;907		87.754	37.055	1	26362000			3139	9487	1854	1860	4131;4132;4133;4134;4135;4136;4137	4135					0.0652742908575874
APGSRLPIN	9	Unmodified	_APGSRLPIN_					0	0	0			REV__nc|ENSG00000116337|Q01433-4|AMPD2	REV__nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7684020996094	2	462.766709	923.518865	-0.75776	-0.00035067	2.2207	0.0010277	1.4629	0.000677	462.76779100937114	23.797	0.51852	23.736	23.6	24.119	-0.06086					26	11	4	0	0	0	0.4752	1	970	970		60.972	2.19	1	764380	+		3140	36590	1855	1861	4138	4138					0.0540460699162395
APGSRLPIN	9	Unmodified	_APGSRLPIN_					0	0	0			REV__nc|ENSG00000116337|Q01433-4|AMPD2	REV__nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.76788330078125	2	462.766709	923.518865	0.42236	0.00019545	1.4224	0.00065826	1.8448	0.00085371	462.76748522823954	23.709	0.48902	23.785	23.647	24.136	0.076241					26	10	3	0	0	0	0.55828	1	931	931		55.504	5.4797	1	721400	+		3141	36590	1855	1861	4139	4139					0.0540460699162395
APGSSTPAPS	10	Unmodified	_APGSSTPAPS_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.2474670410156	2	436.211432	870.408311	-0.406	-0.0001771	4.3142	0.0018819	3.9083	0.0017048	436.212428304259	35.259	0.39864	35.259	35.093	35.492	0					12	10	2	0	0	0	0.03519	1	2705	2705		99.375	28.079	1	66977	+		3142	20737	1856	1862	4140	4140					-0.03207657787277185
APGSSTPAPS	10	Unmodified	_APGSSTPAPS_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2475891113281	2	436.211432	870.408311	-0.7973	-0.00034779	4.4836	0.0019558	3.6863	0.001608	436.21360315505893	35.125	0.40319	35.104	34.905	35.308	-0.021763					12	10	2	0	0	0	0.03519	1	2653	2653		104.75	33.451	1	68845	+		3143	20737	1856	1862	4141	4141					-0.03207657787277185
APGTERQSP	9	Unmodified	_APGTERQSP_					0	0	0		ENST00000235790.8_1_1:202776199-202776370:-|nuORF	ENST00000235790.8_1_1:202776199-202776370:-|nuORF	ENST00000235790.8_1_1:202776199-202776370:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7909240722656	2	471.735606	941.456658	0.67186	0.00031694	-1.0603	-0.00050018	-0.38844	-0.00018324	471.7357197713484	25.611	0.50707	25.691	25.459	25.966	0.08009					31	11	4	0	0	0	0.024323	1	1178	1178		35.618	0	1	198890			3144	11256	1857	1863	4142	4142					-0.016411641473837335
APGTFPLCVP	10	Unmodified	_APGTFPLCVP_					0	0	0		ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.23193359375	2	501.259871	1000.50519	-0.90016	-0.00045121	-3.7302	-0.0018698	-4.6303	-0.002321	501.2579725654139	38.256	0.70302	38.256	38.199	38.902	0					26	18	2	0	0	0	0.03519	1	3202	3202		53.351	10.955	1	439790			3145	13098	1858	1864	4143	4143					0.004956131681524312
APGTFPLCVP	10	Unmodified	_APGTFPLCVP_					0	0	0		ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.231201171875	2	501.259871	1000.50519	-1.3389	-0.00067115	-3.8927	-0.0019513	-5.2317	-0.0026224	501.257819562723	38.171	1.7974	38.198	37.52	39.317	0.027279					85	49	3	0	0	0	0.03519	1	3176	3176		85.359	18.93	1	620200			3146	13098	1858	1864	4144	4144					0.004956131681524312
APGTFPLCVP	10	Unmodified	_APGTFPLCVP_					0	0	0		ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	ENST00000374089.5_1_1:27425314-27425992:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.259871	1000.50519	-0.81954	-0.0004108	0.30996	0.00015537	-0.50958	-0.00025543	501.2585394520746	38.359	0.17064	38.138	38.085	38.256	-0.22149	-0.059614	0.0033144	NaN	53.351	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52997			3147	13098	1858	1864							0.004956131681524312
APGTWRHK	8	Unmodified	_APGTWRHK_					0	0	0		ENSG00000152292|ENST00000469800|SH2D6;nc|ENSG00000152292|Q7Z4S9-4|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7578430175781	2	476.759218	951.503883	0.37525	0.0001789	-2.8794	-0.0013728	-2.5041	-0.0011939	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	1.043	1	13234	13234		30.504	1.3541	1	4565500			3148	6266	1859	1865	4145	4145					0.0261915991427486
APGVQFRPL	9	Unmodified	_APGVQFRPL_					0	0	0			REV__ENSG00000221938|ENST00000641068|OR2A14	REV__ENSG00000221938|ENST00000641068|OR2A14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2668151855469	2	492.784902	983.55525	-0.49527	-0.00024406	-1.4697	-0.00072427	-1.965	-0.00096833	492.7821330148993	28.522	0.61107	28.518	27.929	28.54	-0.0042019					17	14	2	0	0	0	0.024412	1	1653	1653		50.025	7.6284	1	398420	+		3149	28840	1860	1866	4146	4146					0.06281483888335515
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.26898193359375	2	456.269084	910.523616	0.1516	6.9172E-05	-0.92647	-0.00042272	-0.77486	-0.00035355	456.26876057520417	47.481	1.7188	47.481	47.111	48.83	0					106	50	3	0	0	0	0.10174	5	4765	4745;4753;4765;4778;4792		110.12	13.929	1	15648000			3150	4030	1861	1867	4147;4148;4149;4150;4151	4149					0.06477491134376123
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2691345214844	2	456.269084	910.523616	0.10876	4.9622E-05	-0.83752	-0.00038213	-0.72876	-0.00033251	456.2687865946857	47.643	1.5947	47.49	47.161	48.756	-0.15301					110	46	4	0	0	0	0.15366	5	4749	4749;4759;4771;4783;4797		98.629	13.714	1	13712000			3151	4030	1861	1867	4152;4153;4154;4155;4156	4152					0.06477491134376123
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.26934814453125	2	456.269084	910.523616	-0.619	-0.00028243	-0.18837	-8.5946E-05	-0.80737	-0.00036838	456.26912693718316	47.413	1.7191	47.472	47.179	48.898	0.059097					108	49	4	0	0	0	0.067814	5	4674	4674;4684;4696;4708;4724		122.18	37.26	1	15677000			3152	4030	1861	1867	4157;4158;4159;4160;4161	4157					0.06477491134376123
APHAASRP	8	Unmodified	_APHAASRP_					0	0	0		ENST00000500800.2_1_4:144435011-144435338:-|nuORF	ENST00000500800.2_1_4:144435011-144435338:-|nuORF	ENST00000500800.2_1_4:144435011-144435338:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2247314453125	2	403.717019	805.419485	0.74884	0.00030232	1.3111	0.00052931	2.0599	0.00083163	403.71755562725616	27.441	0.50863	27.441	27.144	27.653	0					21	13	2	0	0	0	0.027866	1	1500	1500		60.294	2.4827	1	133750			3153	15648	1862	1868	4162	4162					0.008992090975198153
APHATERL	8	Unmodified	_APHATERL_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.8964538574219	2	447.743234	893.471915	-0.79367	-0.00035536	3.2332	0.0014476	2.4395	0.0010923	447.74382030777923	24.218	0.13202	24.171	24.088	24.22	-0.047148					4	2	2	0	0	0	0.027866	1	1027	1027		18.324	14.008	1	11835	+		3154	25736	1863	1869	4163	4163					0.020917474404768654
APHEPDGVAL	10	Unmodified	_APHEPDGVAL_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.2538757324219	2	503.253631	1004.49271	-1.1079	-0.00055753	0.82184	0.0004136	-0.28601	-0.00014394	503.2540882834702	44.752	1.5034	44.604	44.288	45.792	-0.1488					112	43	4	0	0	0	0.91051	1	4281	4281		53.351	3.3269	1	4705700			3155	1610	1864	1870	4164	4164					-0.009357069705288268
APHHSTSLV	9	Unmodified	_APHHSTSLV_					0	0	0		ENST00000554235.1_1_14:53622984-53623140:+|nuORF	ENST00000554235.1_1_14:53622984-53623140:+|nuORF	ENST00000554235.1_1_14:53622984-53623140:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7693786621094	2	474.748516	947.482479	-0.7192	-0.00034144	4.1078	0.0019502	3.3886	0.0016087	474.7502742367525	22.267	0.85304	22.341	22.125	22.978	0.073954					33	17	2	0	0	0	0.024466	1	715	715		18.324	6.8134	1	159890			3156	16652	1865	1871	4165	4165					0.0066373009490234836
APHLGDAEET	10	Unmodified	_APHLGDAEET_					0	0	0			REV__ENST00000541627.2_1_12:133202087-133202369:-|nuORF	REV__ENST00000541627.2_1_12:133202087-133202369:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2615356445312	2	520.238178	1038.4618	-0.44999	-0.0002341	2.9975	0.0015594	2.5475	0.0013253	520.2397017572832	22.817	0.18237	22.741	22.602	22.784	-0.075294					6	3	2	0	0	0	0.03519	1	817	817		73.975	28.002	1	15777	+		3157	34775	1866	1872	4166	4166					-0.05588905075433104
APHLQDYT	8	Unmodified	_APHLQDYT_					0	0	0		nc|ENSG00000239961|P59901-2|LILRA4;ENSG00000239961|ENST00000291759|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2520751953125	2	472.727249	943.439946	-0.060572	-2.8634E-05	4.1018	0.001939	4.0412	0.0019104	472.7289352665184	30.388	0.91855	30.397	30.205	31.124	0.0086708					41	21	4	0	0	0	0.027866	1	1941	1941		47.916	0	1	883030			3158	10765	1867	1873	4167	4167					-0.03403665033329162
APHPFDHVDRI	11	Unmodified	_APHPFDHVDRI_					0	0	0			REV__ENST00000400143.7_1_18:5293312-5296016:-|nuORF	REV__ENST00000400143.7_1_18:5293312-5296016:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7784118652344	3	435.222916	1302.64692	-0.12853	-5.5938E-05	-3.4563	-0.0015043	-3.5848	-0.0015602	435.2216292593307	36.442	0.32011	36.237	36.164	36.484	-0.20518					10	7	2	0	0	0	0.024751	1	2872	2872		16.53	0	1	118080	+		3159	30811	1868	1874	4168	4168					0.007701225148366575
APHPGKRGL	9	Unmodified	_APHPGKRGL_					0	0	0		ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7751770019531	2	466.774868	931.535184	3.157	0.0014736	-2.885	-0.0013466	0.27202	0.00012697	466.7734057440043	19.546	0.77602	19.612	19.34	20.116	0.066195					26	15	3	0	0	0	0.78069	1	383	383		40.573	3.5441	1	183380			3160	10238	1869	1875	4169	4169					0.06667732948380944
APHSRETEL	9	Unmodified	_APHSRETEL_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.262451171875	2	520.261988	1038.50942	-0.45962	-0.00023912	-0.082981	-4.3172E-05	-0.5426	-0.00028229	520.2618713208313	22.784	0.96893	22.709	22.363	23.332	-0.075296					77	21	6	0	0	0	0.46427	1	807	807		61.691	1.3973	1	5969800			3161	6111	1870	1876	4170	4170					-0.00829206084586076
APHSRETEL	9	Unmodified	_APHSRETEL_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2617797851562	2	520.261988	1038.50942	-1.1222	-0.00058384	0.28991	0.00015083	-0.83229	-0.00043301	520.2622174647464	22.622	1.0252	22.696	22.365	23.39	0.073954					64	22	5	0	0	0	0.33603	2	760	760;772		70.816	12.586	1	5396700			3162	6111	1870	1876	4171;4172	4171					-0.00829206084586076
APIAIGAILAI	11	Unmodified	_APIAIGAILAI_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2635192871094	2	511.83406	1021.65357	-0.37501	-0.00019194	-0.13104	-6.7069E-05	-0.50605	-0.00025901	511.83376568645923	78.724	1.3699	78.743	78.524	79.894	0.018669					51	32	2	0	0	0	0.02479	1	9732	9732		11.511	0	1	190760	+		3163	20058	1871	1877	4173	4173					0.14360667413507144
APIAKVGVL	9	Unmodified	_APIAKVGVL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.2868957519531	2	434.286746	866.558939	0.10462	4.5436E-05	-0.19856	-8.6232E-05	-0.093938	-4.0796E-05	434.2866490344698	52.25	0.87443	52.25	51.836	52.711	0					62	22	4	0	0	0	0.074956	5	5587	5565;5575;5587;5599;5613		119.56	48.179	1	11091000			3164	1141	1872	1878	4174;4175;4176;4177;4178	4176					0.12032153662175915
APIAKVGVL	9	Unmodified	_APIAKVGVL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.286865234375	2	434.286746	866.558939	0.24605	0.00010686	-0.25217	-0.00010951	-0.0061177	-2.6568E-06	434.28662740559577	52.334	1.0584	52.186	51.777	52.835	-0.14735					66	27	4	0	0	0	0.040175	5	5581	5558;5569;5581;5593;5608		133.47	37.421	1	11069000			3165	1141	1872	1878	4179;4180;4181;4182;4183	4181					0.12032153662175915
APIAKVGVL	9	Unmodified	_APIAKVGVL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2869873046875	2	434.286746	866.558939	-0.18014	-7.8234E-05	0.16443	7.141E-05	-0.015715	-6.8247E-06	434.28673474396527	52.085	1.0034	52.177	51.823	52.826	0.091938					68	25	4	0	0	0	0.074956	4	5488	5479;5488;5500;5512		119.56	43.437	1	5812300			3166	1141	1872	1878	4184;4185;4186;4187	4185					0.12032153662175915
APIIRVGGAL	10	Unmodified	_APIIRVGGAL_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.293212890625	2	483.808377	965.6022	-0.89549	-0.00043324	1.0563	0.00051104	0.1608	7.7794E-05	483.8088779794604	57.642	0.41075	57.737	57.608	58.019	0.095306					16	10	2	0	0	0	0.03519	1	6429	6429		42.396	3.59	1	842340			3167	6563	1873	1879	4188	4188					0.11802343439467222
APIISKMIA	9	Unmodified	_APIISKMIA_					0	0	0			REV__LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	REV__LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7909240722656	2	472.285889	942.557224	0.57808	0.00027302	2.2116	0.0010445	2.7897	0.0013175	472.286750786174	25.811	1.2117	25.892	25.459	26.67	0.08009					40	28	3	0	0	0	0.024457	1	1178	1178		37.159	10.112	1	152870	+		3168	26056	1874	1880	4189	4189					0.08364776581902333
APILKPAH	8	Unmodified	_APILKPAH_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.72705078125	2	423.763438	845.512323	-0.21236	-8.9989E-05	2.8884	0.001224	2.676	0.001134	423.7638207531335	34.361	0.30106	34.356	34.19	34.491	-0.0045624					9	7	2	0	0	0	0.027866	1	2557	2557		33.493	8.989	1	51248	+		3169	23683	1875	1881	4190	4190					0.08338713830880806
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.3003234863281	2	441.300188	880.585822	-0.9415	-0.00041549	1.1345	0.00050065	0.19298	8.5163E-05	441.30054698302996	35.944	0.93483	35.739	35.428	36.363	-0.20518					58	25	3	0	0	0	0.81662	1	2780	2780		57.811	15.337	1	2066800			3170	5607	1876	1882	4191	4191					0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.3003234863281	2	441.300188	880.585822	-0.11995	-5.2932E-05	0.28961	0.0001278	0.16966	7.4871E-05	441.3001483179354	35.971	0.89613	35.754	35.43	36.326	-0.21661					55	24	3	0	0	0	0.56067	1	2779	2779		79.939	16.961	1	2009700			3171	5607	1876	1882	4192	4192					0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.3000793457031	2	441.300188	880.585822	0.79347	0.00035016	-0.54919	-0.00024236	0.24428	0.0001078	441.29977498734485	35.925	0.88925	35.727	35.403	36.292	-0.19829					50	24	3	0	0	0	0.52467	1	2761	2761		83.287	17.39	1	1619200			3172	5607	1876	1882	4193	4193					0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	441.300188	880.585822	-0.85028	-0.00037523	1.0482	0.00046255	0.19788	8.7326E-05	441.3004713046372	36.024	0.73863	36.024	35.769	36.508	0	0.16239	0.00044592	NaN	83.287	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1670900			3173	5607	1876	1882							0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.300188	880.585822	-0.92023	-0.0004061	1.1082	0.00048905	0.18796	8.2949E-05	441.30051945253416	35.924	0.60019	35.881	35.608	36.208	-0.042454	0.019369	0.0004989	NaN	83.287	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1691400			3174	5607	1876	1882							0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	441.300188	880.585822	-0.29012	-0.00012803	0.43034	0.00018991	0.14022	6.1879E-05	441.30022139841213	36.007	0.74261	36.045	35.735	36.478	0.038044	0.1837	-9.9378E-05	NaN	83.287	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541100			3175	5607	1876	1882							0.14075262273365752
APILRLRE	8	Unmodified	_APILRLRE_					0	0	0		ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.307861328125	2	484.306001	966.597449	0.28311	0.00013711	3.6272	0.0017567	3.9103	0.0018938	484.30766661690166	78.449	0.9782	78.293	78	78.978	-0.15592					58	22	4	0	0	0	0.6536	1	9360	9360		71.296	2.811	1	3381400			3176	17307	1877	1883	4194	4194					0.11281459296708363
APILSRFRVS	10	Unmodified	_APILSRFRVS_					0	0	0			REV__ENSG00000188739|ENST00000408888|RBM34	REV__ENSG00000188739|ENST00000408888|RBM34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2793579101562	2	573.343115	1144.67168	0.75351	0.00043202	0.73841	0.00042336	1.4919	0.00085538	573.3436837742651	77.749	0.63319	77.506	77.276	77.909	-0.24232					24	14	3	0	0	0	0.03519	1	9315	9315		19.997	0	1	240980	+		3177	28059	1878	1884	4195	4195					0.1051280238821164
APIQDGGKV	9	Unmodified	_APIQDGGKV_					0	0	0			REV__ENSG00000075673|ENST00000381946|ATP12A	REV__ENSG00000075673|ENST00000381946|ATP12A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.74267578125	2	442.745442	883.476331	-0.61464	-0.00027213	0.89446	0.00039602	0.27982	0.00012389	442.7456179315004	47.756	0.65694	47.815	47.489	48.146	0.059097					30	19	2	0	0	0	0.024354	1	4814	4814		38.806	5.2906	1	544630	+		3178	20555	1879	1885	4196	4196					0.02993211863383749
APIQDGGKV	9	Unmodified	_APIQDGGKV_					0	0	0			REV__ENSG00000075673|ENST00000381946|ATP12A	REV__ENSG00000075673|ENST00000381946|ATP12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.745442	883.476331	-0.30453	-0.00013483	0.26985	0.00011947	-0.034683	-1.5356E-05	442.7454931680785	47.763	0.81291	47.763	47.361	48.174	0	-0.0082881	-0.00016652	NaN	38.806	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580920	+		3179	20555	1879	1885							0.02993211863383749
APIQDGGKV	9	Unmodified	_APIQDGGKV_					0	0	0			REV__ENSG00000075673|ENST00000381946|ATP12A	REV__ENSG00000075673|ENST00000381946|ATP12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.745442	883.476331	-0.22727	-0.00010062	0.44898	0.00019878	0.2217	9.8158E-05	442.74549571634236	47.888	0.78442	47.735	47.476	48.26	-0.15301	-0.036115	-7.9036E-06	NaN	38.806	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442220	+		3180	20555	1879	1885							0.02993211863383749
APIQGNREEL	10	Unmodified	_APIQGNREEL_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.7963256835938	2	563.796195	1125.57784	-0.52753	-0.00029742	0.025874	1.4588E-05	-0.50166	-0.00028283	563.795910014398	37.173	1.0002	37.205	36.957	37.957	0.032269					55	26	4	0	0	0	0.40114	1	2966	2966		98.582	18.869	1	1808900			3181	1848	1880	1886	4197	4197					0.020070384952759923
APIQGNREEL	10	Unmodified	_APIQGNREEL_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.796195	1125.57784	0.53558	0.00030196	-1.6081	-0.00090663	-1.0725	-0.00060468	563.7950954410124	37.235	0.83042	37.235	37.005	37.836	0	0.081277	-0.0012561	NaN	98.582	63	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1909800			3182	1848	1880	1886							0.020070384952759923
APIQGNREEL	10	Unmodified	_APIQGNREEL_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.796195	1125.57784	-0.056077	-3.1616E-05	-0.79578	-0.00044866	-0.85186	-0.00048027	563.795520643757	37.085	0.87354	37.022	36.749	37.622	-0.063389	-0.1323	-0.00034012	NaN	98.582	65	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1874800			3183	1848	1880	1886							0.020070384952759923
APIRQSSLG	9	Unmodified	_APIRQSSLG_					0	0	0			REV__ENSG00000133243|ENST00000255608|BTBD2	REV__ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7640075683594	2	464.764166	927.513779	1.0694	0.00049703	-1.9403	-0.00090176	-0.87083	-0.00040473	464.76331159374956	33.385	0.82092	33.441	33.07	33.89	0.056568					61	21	4	0	0	0	0.4752	1	2362	2362		60.972	5.4677	1	15221000	+		3184	23363	1881	1887	4198	4198					0.04712303128997064
APKANGTSAL	10	Unmodified	_APKANGTSAL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2566223144531	2	465.256174	928.497795	-0.68449	-0.00031846	2.0072	0.00093384	1.3227	0.00061538	465.2567971958896	27.491	0.89801	27.491	27.215	28.113	0					45	23	3	0	0	0	0.66532	3	1514	1503;1514;1526		69.628	13.776	1	1009700			3185	7521	1882	1888	4199;4200;4201	4200					0.030685968920693085
APKANGTSAL	10	Unmodified	_APKANGTSAL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2565612792969	2	465.256174	928.497795	-0.31337	-0.0001458	1.6011	0.00074494	1.2878	0.00059914	465.25661648205653	27.455	0.85963	27.442	27.134	27.994	-0.012983					45	22	3	0	0	0	0.24941	2	1497	1486;1497		114.89	24.118	1	1030800			3186	7521	1882	1888	4202;4203	4203					0.030685968920693085
APKANGTSAL	10	Unmodified	_APKANGTSAL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.25714111328125	2	465.256174	928.497795	-0.32283	-0.0001502	1.9211	0.00089379	1.5982	0.00074359	465.2566989428822	27.144	0.76187	27.226	26.96	27.722	0.081293					41	20	3	0	0	0	0.29487	3	1411	1400;1411;1424		109.48	38.183	1	1188000			3187	7521	1882	1888	4204;4205;4206	4205					0.030685968920693085
APKAPGSPW	9	Unmodified	_APKAPGSPW_					0	0	0		nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.7425842285156	2	455.742702	909.470852	-0.11456	-5.2211E-05	0.8034	0.00036615	0.68884	0.00031393	455.7427139373561	43.242	0.79927	43.242	42.895	43.695	0					70	21	6	0	0	0	0.015901	2	4043	4030;4043		157.33	97.035	1	2972700			3188	18743	1883	1889	4207;4208	4208					0.012495330715637465
APKAPGSPW	9	Unmodified	_APKAPGSPW_					0	0	0		nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.74273681640625	2	455.742702	909.470852	-0.36635	-0.00016696	0.87587	0.00039917	0.50952	0.00023221	455.74285318375223	43.429	0.65366	43.289	42.991	43.645	-0.13929					39	17	3	0	0	0	0.013333	1	4042	4042		176.41	105.03	1	2679000			3189	18743	1883	1889	4209	4209					0.012495330715637465
APKAPGSPW	9	Unmodified	_APKAPGSPW_					0	0	0		nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	455.742702	909.470852	0.53773	0.00024507	-0.063318	-2.8857E-05	0.47442	0.00021621	455.74234691532155	43.322	1.0901	43.353	42.722	43.812	0.030827	0.058136	-0.00064369	NaN	176.41	74	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2826100			3190	18743	1883	1889							0.012495330715637465
APKKSATQF	9	Unmodified	_APKKSATQF_					0	0	0		nc|ENSG00000163382|Q8NCW5-2|NAXE;ENSG00000163382|ENST00000368235|NAXE	nc|ENSG00000163382|Q8NCW5-2|NAXE	nc|ENSG00000163382|Q8NCW5-2|NAXE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2746887207031	2	489.274367	976.53418	-0.4617	-0.0002259	0.45088	0.0002206	-0.010828	-5.2977E-06	489.2744291425784	21.124	0.8236	21.034	20.675	21.499	-0.090092					51	16	5	0	0	0	0.5973	1	611	611		52.937	10.462	1	401070			3191	7069	1884	1890	4210	4210					0.04497473788808293
APKMRRFI	8	Unmodified	_APKMRRFI_					0	0	0			REV__ENST00000451728.6_2_3:128889931-128890333:-|nuORF	REV__ENST00000451728.6_2_3:128889931-128890333:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.8033752441406	2	509.802571	1017.59059	-0.19411	-9.8956E-05	1.8716	0.00095413	1.6775	0.00085517	509.8034285997381	98.344	1.8091	98.179	97.397	99.206	-0.1652					61	42	2	0	0	0	1.0133	1	12156	12156		35.201	6.9464	1	651920	+		3192	32723	1885	1891	4211	4211					0.08249823144478796
APKPGGLSL	9	Unmodified	_APKPGGLSL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.2530212402344	2	420.252903	838.491253	-0.25165	-0.00010576	0.24659	0.00010363	-0.0050619	-2.1273E-06	420.2529137833623	45.292	0.97987	45.292	45.006	45.986	0					63	28	3	0	0	0	0.067814	3	4400	4388;4400;4412		122.18	10.528	1	8314800			3193	7903	1886	1892	4212;4213;4214	4213					0.06554703731376321
APKPGGLSL	9	Unmodified	_APKPGGLSL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.2529602050781	2	420.252903	838.491253	-0.42167	-0.00017721	0.46644	0.00019602	0.044772	1.8815E-05	420.2529804530528	45.404	0.85166	45.255	44.974	45.825	-0.1488					73	24	5	0	0	0	0.077175	1	4414	4414		118.74	19.368	1	8184900			3194	7903	1886	1892	4215	4215					0.06554703731376321
APKPGGLSL	9	Unmodified	_APKPGGLSL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.2532043457031	2	420.252903	838.491253	-0.0057165	-2.4024E-06	0.18762	7.8849E-05	0.18191	7.6447E-05	420.25288043741466	45.279	0.9201	45.323	45.038	45.958	0.04388					71	26	4	0	0	0	0.057894	1	4326	4326		125.81	1.2198	1	7697300			3195	7903	1886	1892	4216	4216					0.06554703731376321
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7769775390625	2	485.777077	969.5396	-1.4459	-0.00070241	0.65111	0.0003163	-0.79483	-0.00038611	485.77741638314444	29.81	2.0144	29.81	29.032	31.047	0					179	49	6	0	0	0	0.03849	8	1871	1835;1847;1859;1871;1883;1896;1908;1922		134.81	50.105	1	23090000			3196	9808;7213	1887	1893	4217;4218;4219;4220;4221;4222;4223;4224	4220					0.053611973712691
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7768249511719	2	485.777077	969.5396	-0.64997	-0.00031574	-0.18212	-8.8472E-05	-0.8321	-0.00040421	485.7770053754979	29.764	2.0189	29.772	29.019	31.038	0.00811					166	49	6	0	0	0	0.03849	7	1886	1815;1826;1837;1849;1861;1874;1886		134.81	40.455	1	23028000			3197	9808;7213	1887	1893	4225;4226;4227;4228;4229;4230;4231	4231					0.053611973712691
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7768249511719	2	485.777077	969.5396	-1.1533	-0.00056023	0.30537	0.00014834	-0.84791	-0.00041189	485.77724655372816	29.549	1.889	29.627	28.865	30.754	0.078344					150	46	5	0	0	0	0.057894	8	1768	1734;1745;1756;1768;1780;1792;1804;1818		125.81	47.921	1	25456000			3198	9808;7213	1887	1893	4232;4233;4234;4235;4236;4237;4238;4239	4235					0.053611973712691
APKRPPSGF	9	Unmodified	_APKRPPSGF_					0	0	0		HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;ENSG00000029993|ENST00000325307|HMGB3	HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant	HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.76806640625	2	478.769252	955.52395	-0.2404	-0.00011509	-1.8062	-0.00086474	-2.0466	-0.00097984	478.76818862456406	28.158	1.4437	28.239	27.463	28.907	0.080811					81	35	3	0	0	0	0.42604	1	1565	1565		64.207	18.255	1	1475900			3199	1008	1888	1894	4240	4240					0.0444091085423679
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.75543212890625	2	490.756007	979.497461	-0.71463	-0.00035071	-0.20436	-0.00010029	-0.91899	-0.000451	490.75590575008493	43.461	2.2622	43.461	43.113	45.375	0					189	64	6	0	0	0	0.2261	2	4057	4057;4093		117.81	35.506	1	66395000			3200	16918	1889	1895	4241;4242	4241					0.006891771722393969
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.7559509277344	2	490.756007	979.497461	-0.78213	-0.00038384	-0.15289	-7.5032E-05	-0.93502	-0.00045887	490.7559213602836	43.625	1.989	43.48	43.094	45.083	-0.14471					186	56	7	0	0	0	0.1333	3	4111	4063;4087;4111		129.42	39.851	1	59536000			3201	16918	1889	1895	4243;4244;4245	4245					0.006891771722393969
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.75579833984375	2	490.756007	979.497461	-0.10009	-4.912E-05	-0.83893	-0.00041171	-0.93902	-0.00046083	490.7555840936629	43.549	1.9413	43.58	43.191	45.132	0.030827					173	54	7	0	0	0	0.1333	3	4048	4012;4048;4067		129.42	39.051	1	62935000			3202	16918	1889	1895	4246;4247;4248	4247					0.006891771722393969
APLCDCTC	8	Unmodified	_APLCDCTC_					0	0	0		ENSG00000091664|ENST00000263160|SLC17A6;SLC17A6|p.L67M|1|0.44|ENSG00000091664|chr11:22341640-22341640|C/A|missense_variant	ENSG00000091664|ENST00000263160|SLC17A6	ENSG00000091664|ENST00000263160|SLC17A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.15081787109375	2	413.150617	824.286681	0.30815	0.00012731	0.093362	3.8573E-05	0.40152	0.00016589	413.1508417125863	81.516	0.96786	81.287	80.98	81.948	-0.2289					61	22	4	0	0	0	1.0017	1	9788	9788		37.028	1.8278	1	1506100			3203	1968	1890	1896	4249	4249					-0.13249062737327222
APLDLLLSCL	10	Unmodified	_APLDLLLSCL_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.25830078125	2	529.301736	1056.58892	0.15154	8.0208E-05	2.3094	0.0012223	2.4609	0.0013026	529.3027869617162	17.252	0.2065	17.109	16.977	17.183	-0.14278					8	4	2	0	0	0	0.03519	1	127	127		23.042	4.7181	1	50624			3204	7975	1891	1897	4250	4250					0.06288724545220248
APLDLLLSCL	10	Unmodified	_APLDLLLSCL_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.301736	1056.58892	2.839	0.0015027	-0.57083	-0.00030214	2.2682	0.0012006	529.301214858173	17.127	0.26167	17.127	16.989	17.25	0	0.0086745	-0.0013988	NaN	23.042	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65479			3205	7975	1891	1897							0.06288724545220248
APLDPPGRLL	10	Unmodified	_APLDPPGRLL_					0	0	0			REV__ENST00000336431.9_1_20:33450700-33460640:-|nuORF	REV__ENST00000336431.9_1_20:33450700-33460640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.8279418945312	2	524.811116	1047.60768	1.1782	0.00061832	-1.2254	-0.00064312	-0.047261	-2.4803E-05	524.8102817400872	98.116	0.18784	97.992	97.882	98.069	-0.12414					6	4	2	0	0	0	0.03519	1	12144	12144		54.776	3.4409	1	59802	+		3206	30545	1892	1898	4251	4251					0.08578022231290561
APLEATRR	8	Unmodified	_APLEATRR_					0	0	0		ENSG00000183807|ENST00000368557|FAM162B	ENSG00000183807|ENST00000368557|FAM162B	ENSG00000183807|ENST00000368557|FAM162B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2643127441406	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	1.0106	1	9838	9838		35.618	0	1	4140300			3207	9279	1893	1899	4252	4252					0.054357228488470355
APLGGRQGF	9	Unmodified	_APLGGRQGF_					0	0	0		ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.74542236328125	2	451.745776	901.477	0.42608	0.00019248	-0.003412	-1.5414E-06	0.42267	0.00019094	451.74551985792925	39.338	0.83756	39.338	38.97	39.808	0					42	23	2	0	0	0	0.55828	1	3383	3383		55.504	2.1528	1	2591900			3208	10917	1894	1900	4253	4253					0.022320513030990696
APLGGRQGF	9	Unmodified	_APLGGRQGF_					0	0	0		ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.7453918457031	2	451.745776	901.477	-0.64865	-0.00029302	1.0634	0.00048037	0.41472	0.00018735	451.74602686427846	39.362	0.88519	39.263	38.843	39.728	-0.098751					43	24	2	0	0	0	0.40179	1	3371	3371		65.803	10.909	1	2433000			3209	10917	1894	1900	4254	4254					0.022320513030990696
APLIRLGL	8	Unmodified	_APLIRLGL_					0	0	0			REV__ENST00000409490.5_1_2:98948164-98950423:-|nuORF	REV__ENST00000409490.5_1_2:98948164-98950423:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.3028564453125	2	426.786913	851.559273	0.19512	8.3277E-05	0.45006	0.00019208	0.64519	0.00027536	426.78677337875797	63.787	0.50114	63.595	63.38	63.881	-0.19243					17	12	2	0	0	0	0.027866	1	7229	7229		40.573	7.057	1	200260	+		3210	31962	1895	1901	4255	4255					0.12755573382037255
APLKAPSK	8	Unmodified	_APLKAPSK_					0	0	0		ENST00000584950.5_1_17:16843035-16843689:-|nuORF	ENST00000584950.5_1_17:16843035-16843689:-|nuORF	ENST00000584950.5_1_17:16843035-16843689:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.8768005371094	2	406.255446	810.496338	0.082747	3.3616E-05	3.5679	0.0014495	3.6507	0.0014831	406.25678417575483	49.581	1.3517	49.4	48.704	50.055	-0.18071					61	35	2	0	0	0	0.027866	1	5046	5046		18.324	3.6603	1	314210			3211	17216	1896	1902	4256	4256					0.08351007593989834
APLKLRLTEL	10	Unmodified	_APLKLRLTEL_					0	0	0			REV__ENST00000594361.1_1_19:51849976-51850294:-|nuORF	REV__ENST00000594361.1_1_19:51849976-51850294:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.3663330078125	2	577.368798	1152.72304	-0.32694	-0.00018876	-3.4688	-0.0020028	-3.7958	-0.0021916	577.3666744516432	101.1	0.73207	101.11	100.83	101.56	0.0090332					51	16	4	0	0	0	0.98754	1	12902	12902		47.657	4.7931	1	1370400	+		3212	21521	1897	1903	4257	4257					0.15279126362247553
APLKRGSH	8	Unmodified	_APLKRGSH_					0	0	0			REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2537841796875	2	433.253769	864.492984	-0.38675	-0.00016756	0.64508	0.00027948	0.25833	0.00011192	433.2539374380012	28.71	0.79223	28.706	28.33	29.122	-0.0042019					38	18	3	0	0	0	0.94517	1	1685	1685		45.952	15.448	1	1018600	+		3213	29300	1898	1904	4258	4258					0.05531757539995397
APLKRGSH	8	Unmodified	_APLKRGSH_					0	0	0			REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	433.253769	864.492984	-0.83314	-0.00036096	1.2075	0.00052315	0.37434	0.00016219	433.2542087262683	28.757	0.8978	28.757	28.362	29.26	0	0.095004	0.0004203	NaN	45.952	47	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1088400	+		3214	29300	1898	1904							0.05531757539995397
APLKRGSH	8	Unmodified	_APLKRGSH_					0	0	0			REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	433.253769	864.492984	-0.38675	-0.00016756	0.64508	0.00027948	0.25833	0.00011192	433.2539374380012	28.71	0.79223	28.706	28.33	29.122	-0.0042019	0.043394	-6.7028E-05	NaN	45.952	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1018600	+		3215	29300	1898	1904							0.05531757539995397
APLKRGSH	8	Unmodified	_APLKRGSH_					0	0	0			REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	433.253769	864.492984	0.26464	0.00011466	0.013768	5.9652E-06	0.27841	0.00012062	433.25370035165685	28.443	1.081	28.524	28.124	29.205	0.080811	-0.1384	-0.00061407	NaN	45.952	48	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1053500	+		3216	29300	1898	1904							0.05531757539995397
APLLFRDV	8	Unmodified	_APLLFRDV_					0	0	0		nc|ENSG00000170909|Q8IYS5-6|OSCAR;nc|ENSG00000170909|Q8IYS5-2|OSCAR;nc|ENSG00000170909|Q8IYS5-3|OSCAR;nc|ENSG00000170909|Q8IYS5-4|OSCAR;nc|ENSG00000170909|Q8IYS5-5|OSCAR;nc|ENSG00000170909|Q8IYS5|OSCAR;nc|ENSG00000170909|Q8IYS5-7|OSCAR;ENSG00000170909|ENST00000358375|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2200622558594	2	465.774003	929.533452	-0.30065	-0.00014003	4.0102	0.0018678	3.7095	0.0017278	465.77584215847116	33.585	0.41695	33.592	33.423	33.84	0.0066261					16	10	2	0	0	0	0.027866	1	2450	2450		40.573	0	1	329750			3217	18509	1899	1905	4259	4259					0.06586679139752505
APLLFRDV	8	Unmodified	_APLLFRDV_					0	0	0		nc|ENSG00000170909|Q8IYS5-6|OSCAR;nc|ENSG00000170909|Q8IYS5-2|OSCAR;nc|ENSG00000170909|Q8IYS5-3|OSCAR;nc|ENSG00000170909|Q8IYS5-4|OSCAR;nc|ENSG00000170909|Q8IYS5-5|OSCAR;nc|ENSG00000170909|Q8IYS5|OSCAR;nc|ENSG00000170909|Q8IYS5-7|OSCAR;ENSG00000170909|ENST00000358375|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.774003	929.533452	0.86254	0.00040175	2.7949	0.0013018	3.6574	0.0017035	465.7753214912454	33.493	0.27085	33.549	33.461	33.732	0.056568	-0.02122	-0.00063953	NaN	50.025	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265110			3218	18509	1899	1905							0.06586679139752505
APLLKEGLRI	10	Unmodified	_APLLKEGLRI_					0	0	0			REV__ENSG00000117643|ENST00000374332|MAN1C1;REV__ENST00000473891.1_1_1:26013020-26085338:+|nuORF	REV__ENSG00000117643|ENST00000374332|MAN1C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.3533325195312	2	555.355691	1108.69683	0.40846	0.00022684	-4.2963	-0.002386	-3.8878	-0.0021591	555.353141892147	99.697	0.72572	99.692	99.254	99.98	-0.0050888					43	16	4	0	0	0	1.0508	2	12653	12653;12665		39.253	5.0803	1	951200	+		3219	22367;33258	1900	1906	4260;4261	4260					0.14682857190791765
APLLLLWVSL	10	Unmodified	_APLLLLWVSL_					0	0	0			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.7487182617188	2	562.857535	1123.70052	-0.16826	-9.4704E-05	4.0895	0.0023018	3.9212	0.0022071	562.8593456034732	106.6	0.26768	106.6	106.41	106.67	-0.0021439					13	8	2	0	0	0	0.03519	1	13628	13628		17.365	0	1	64035	+		3220	27935	1901	1907	4262	4262					0.14361526964648874
APLLPRLGLL	10	Unmodified	_APLLPRLGLL_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8186645507812	2	531.855327	1061.6961	0.35571	0.00018919	-1.4632	-0.00077821	-1.1075	-0.00058902	531.8547746558763	85.411	1.1242	85.411	84.917	86.042	0					44	26	2	0	0	0	0.03519	1	10722	10722		40.778	6.6056	1	88724			3221	3417	1902	1908	4263	4263					0.16772062541758714
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.3081970214844	2	484.308013	966.601472	0.13636	6.6039E-05	-0.31724	-0.00015364	-0.18088	-8.7604E-05	484.30774292721304	78.643	0.93561	78.388	78.084	79.02	-0.25471					61	21	4	0	0	0	0.68535	2	9374	9374;9385		68.485	12.98	1	3081200			3222	2169	1903	1909	4264;4265	4264					0.11683548790404075
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.3081359863281	2	484.308013	966.601472	0.22183	0.00010743	-0.48132	-0.00023311	-0.25949	-0.00012567	484.307676550077	78.553	1.0984	78.322	78.049	79.148	-0.23141					60	25	4	0	0	0	0.56067	1	9395	9395		79.939	8.6435	1	3587200			3223	2169	1903	1909	4266	4266					0.11683548790404075
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.3084411621094	2	484.308013	966.601472	0.28311	0.00013711	-0.52593	-0.00025471	-0.24282	-0.0001176	484.30766661690166	78.449	0.9782	78.293	78	78.978	-0.15592					58	22	4	0	0	0	0.68535	3	9338	9338;9348;9376		68.485	10.673	1	3381400			3224	2169	1903	1909	4267;4268;4269	4267					0.11683548790404075
APLLTALAL	9	Unmodified	_APLLTALAL_					0	0	0			REV__ENST00000530505.1_2_1:207094741-207095257:-|nuORF	REV__ENST00000530505.1_2_1:207094741-207095257:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.85394287109375	2	441.786579	881.558604	-0.022665	-1.0013E-05	-2.1473	-0.00094866	-2.17	-0.00095867	441.78587957863317	32.01	0.51233	31.852	31.609	32.121	-0.15772					15	11	2	0	0	0	0.024517	1	2131	2131		19.36	6.4008	1	107690	+		3225	32938	1904	1910	4270	4270					0.11308733942303206
APLLTVVIE	9	Unmodified	_APLLTVVIE_					0	0	0			REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7972717285156	2	477.797143	953.579734	1.1591	0.00055384	-1.1256	-0.0005378	0.033575	1.6042E-05	477.7965293272773	96.337	2.6643	96.339	95.395	98.06	0.0020676					149	61	4	0	0	0	0.80658	1	12186	12186		38.806	1.647	1	9914000	+		3226	24841	1905	1911	4271	4271					0.10108699251190956
APLLTWII	8	Unmodified	_APLLTWII_					0	0	0		ENST00000463001.5_1_1:157765400-157765580:-|nuORF	ENST00000463001.5_1_1:157765400-157765580:-|nuORF	ENST00000463001.5_1_1:157765400-157765580:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2789611816406	2	463.789121	925.56369	-0.37311	-0.00017304	-0.58569	-0.00027163	-0.95879	-0.00044468	463.7873216074596	51.919	0.51797	51.771	51.577	52.095	-0.14735					19	14	2	0	0	0	0.027866	1	5541	5541		28.254	6.5519	1	338490			3227	14723	1906	1912	4272	4272					0.0979303780494547
APLPAAHTPP	10	Unmodified	_APLPAAHTPP_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2-CCDC12|3|fusion	REV__ENSG00000181555|ENST00000409792|SETD2	MSMS	OPSCC_40_ClassI_Rep-3	6	486.2671813964844	2	486.269084	970.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.542	1	98.377	97.877	98.877	-0.1652								0	0	0	0.74846	1	12193	12193		30.504	0	1		+		3228	27410;37479	1907	1913	4273	4273					0.03717491134352713
APLPTARAGA	10	Unmodified	_APLPTARAGA_					0	0	0		ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7678527832031	2	462.766709	923.518865	-0.46181	-0.00021371	1.0446	0.00048339	0.58275	0.00026968	462.7670283708067	23.827	0.34226	23.827	23.694	24.036	0					21	7	3	0	0	0	1.0992	1	992	992		32.812	3.6629	1	799120			3229	9490	1908	1914	4274	4274					0.054046069916125816
APLQDLVI	8	Unmodified	_APLQDLVI_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.75927734375	2	434.760561	867.506569	0.66526	0.00028923	-3.4121	-0.0014835	-2.7469	-0.0011942	434.7589968686671	86.998	1.8354	86.856	86.147	87.982	-0.14218					104	43	4	0	0	0	0.99042	1	10582	10582		38.806	5.2906	1	5508400			3230	3668	1909	1915	4275	4275					0.06751570528570028
APLQTHPG	8	Unmodified	_APLQTHPG_					0	0	0			REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF	REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.7186584472656	2	410.719227	819.423902	0.76249	0.00031317	-1.8416	-0.00075639	-1.0791	-0.00044322	410.71839091260426	95.381	1.9576	95.381	94.702	96.659	0					107	45	4	0	0	0	1.0574	2	12118	12118;12128		26.796	5.0938	1	3807300	+		3231	29660	1910	1916	4276;4277	4276					0.006966735204287033
APLQTHPG	8	Unmodified	_APLQTHPG_					0	0	0			REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF	REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.7189025878906	2	410.719227	819.423902	0.44315	0.00018201	-1.4011	-0.00057547	-0.95797	-0.00039345	410.7185615601089	96.027	1.7726	95.89	95.331	97.104	-0.1367					105	40	4	0	0	0	1.0239	1	11865	11865		33.516	9.3128	1	2186500	+		3232	29660	1910	1916	4278	4278					0.006966735204287033
APLRCVDL	8	Unmodified	_APLRCVDL_					0	0	0			REV__ENSG00000283297|ENST00000637658|TEX52	REV__ENSG00000283297|ENST00000637658|TEX52	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.74267578125	2	443.744388	885.474223	-0.35625	-0.00015808	-3.408	-0.0015123	-3.7642	-0.0016704	443.7427489846726	48.056	1.1901	48.123	47.716	48.906	0.066795					63	33	2	0	0	0	0.74904	1	4814	4814		63.306	2.3343	1	2354700	+		3233	29243	1911	1917	4279	4279					0.02690459853909033
APLRCVDL	8	Unmodified	_APLRCVDL_					0	0	0			REV__ENSG00000283297|ENST00000637658|TEX52	REV__ENSG00000283297|ENST00000637658|TEX52	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.744388	885.474223	-0.40438	-0.00017944	-3.2934	-0.0014614	-3.6978	-0.0016409	443.74278591931767	48.183	1.424	48.183	47.717	49.141	0	0.01432	1.4754E-05	NaN	63.306	94	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2322300	+		3234	29243	1911	1917							0.02690459853909033
APLRCVDL	8	Unmodified	_APLRCVDL_					0	0	0			REV__ENSG00000283297|ENST00000637658|TEX52	REV__ENSG00000283297|ENST00000637658|TEX52	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.744388	885.474223	-0.34872	-0.00015474	-3.2167	-0.0014274	-3.5655	-0.0015822	443.7427973615224	48.353	1.3773	48.2	47.734	49.111	-0.15301	0.031305	8.2791E-05	NaN	63.306	99	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2091500	+		3235	29243	1911	1917							0.02690459853909033
APLRCVDL	8	Unmodified	_APLRCVDL_					0	0	0			REV__ENSG00000283297|ENST00000637658|TEX52	REV__ENSG00000283297|ENST00000637658|TEX52	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	443.744388	885.474223	-0.35625	-0.00015808	-3.408	-0.0015123	-3.7642	-0.0016704	443.7427489846726	48.056	1.1901	48.123	47.716	48.906	0.066795	-0.045625	-8.6941E-05	NaN	63.306	63	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2354700	+		3236	29243	1911	1917							0.02690459853909033
APLRPAAAP	9	Unmodified	_APLRPAAAP_					0	0	0			REV__ENST00000397940.5_3_8:21881645-21881798:+|nuORF	REV__ENST00000397940.5_3_8:21881645-21881798:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.25885009765625	2	432.25852	862.502486	-0.78697	-0.00034017	1.0747	0.00046456	0.28775	0.00012438	432.2588597049529	35.824	1.0275	35.824	35.343	36.37	0					71	27	4	0	0	0	0.44472	1	2779	2779		62.978	0	1	2591400	+		3237	31791	1912	1918	4280	4280					0.06573525825501747
APLRPLALG	9	Unmodified	_APLRPLALG_					0	0	0			REV__ENSG00000158716|ENST00000368107|DUSP23	REV__ENSG00000158716|ENST00000368107|DUSP23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.74566650390625	2	454.28982	906.565087	0.30473	0.00013843	-0.45113	-0.00020495	-0.14641	-6.6512E-05	454.2895433248174	54.016	0.69796	54.016	53.763	54.461	0					45	19	3	0	0	0	0.024386	1	5903	5903		42.474	8.9589	1	723980	+		3238	25216	1913	1919	4281	4281					0.1080667189369251
APLRQLLL	8	Unmodified	_APLRQLLL_					0	0	0		ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.30322265625	2	462.30547	922.596387	0.31075	0.00014366	0.27904	0.000129	0.58979	0.00027266	462.3053922999407	66.188	1.8839	66.188	65.566	67.45	0					87	51	4	0	0	0	0.95417	1	7891	7891		44.531	0	1	5917800			3239	8716	1914	1920	4282	4282					0.13199244927807285
APLRSTFG	8	Unmodified	_APLRSTFG_					0	0	0			REV__ZIC1|p.E30Nfs*134|1|0.09|ENSG00000152977|chr3:147410198-147410198|C/-|frameshift_variant	REV__ZIC1|p.E30Nfs*134|1|0.09|ENSG00000152977|chr3:147410198-147410198|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.73455810546875	2	424.734877	847.455202	0.082658	3.5108E-05	-0.16	-6.7956E-05	-0.077339	-3.2849E-05	424.73471132192145	37.208	0.8239	37.144	36.866	37.69	-0.063385					48	22	3	0	0	0	0.87148	1	3023	3023		53.351	3.3269	1	4134200	+		3240	37800	1915	1921	4283	4283					0.025372465545387968
APLSGYVV	8	Unmodified	_APLSGYVV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	403.23779296875	2	403.226354	804.438155	0.10828	4.3662E-05	4.2155	0.0016998	4.3238	0.0017435	403.22810111773117	30.711	0.94902	30.719	29.962	30.911	0.0086708					37	22	3	0	0	0	0.027866	1	1871	1871		57.453	7.4281	1	128040			3241	6479	1916	1922	4284	4284					0.028113259487213327
APLSGYVV	8	Unmodified	_APLSGYVV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	403.226354	804.438155	1.4261	0.00057503	6.4759	0.0026112	7.9019	0.0031863	403.2290549146404	30.246	0.3735	30.32	30.17	30.544	0.074314	-0.1997	0.00044553	NaN	57.453	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174430			3242	6479	1916	1922							0.028113259487213327
APLTRLQTRNL	11	Unmodified	_APLTRLQTRNL_					0	0	0			REV__ENSG00000178732|ENST00000692618|GP5	REV__ENSG00000178732|ENST00000692618|GP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8823852539062	2	641.883136	1281.75172	0.55581	0.00035677	-1.6557	-0.0010628	-1.0999	-0.00070601	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	1.0238	1	12294	12294		31.53	1.2121	1	3344500	+		3243	27203	1917	1923	4285	4285					0.12211243991396259
APLTRLQTRNL	11	Unmodified	_APLTRLQTRNL_					0	0	0			REV__ENSG00000178732|ENST00000692618|GP5	REV__ENSG00000178732|ENST00000692618|GP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.88232421875	2	641.883136	1281.75172	0.89146	0.00057221	-2.0214	-0.0012975	-1.1299	-0.00072529	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	1.0238	1	12223	12223		31.53	0	1	2810000	+		3244	27203	1917	1923	4286	4286					0.12211243991396259
APMETQFPH	9	Unmodified	_APMETQFPH_					0	0	0		ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2763061523438	2	529.242209	1056.46987	-0.8189	-0.0004334	1.5639	0.0008277	0.74504	0.00039431	529.2423313511483	48.838	0.63621	48.905	48.452	49.089	0.066795					28	17	3	0	0	0	0.024506	1	4956	4956		38.806	23.164	1	83524			3245	10989	1918	1924	4287	4287					-0.056110493596634115
APMETQFPH	9	Unmodified	_APMETQFPH_					0	0	0		ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.242209	1056.46987	-0.7085	-0.00037497	-3.1775	-0.0016816	-3.886	-0.0020566	529.2405144204273	49.118	0.65049	49.017	48.689	49.34	-0.1008	-0.063398	-0.0012412	NaN	23.042	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142100			3246	10989	1918	1924							-0.056110493596634115
APMETQFPH	9	Unmodified	_APMETQFPH_					0	0	0		ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.242209	1056.46987	-0.39582	-0.00020949	-2.6695	-0.0014128	-3.0653	-0.0016223	529.2403053486438	49.381	0.42425	49.102	48.934	49.359	-0.27977	0.020991	-0.00070352	NaN	23.042	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132060			3247	10989	1918	1924							-0.056110493596634115
APMETQFPH	9	Unmodified	_APMETQFPH_					0	0	0		ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	ENSG00000268629|ENST00000600991|TEX13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.242209	1056.46987	-0.025878	-1.3696E-05	-4.3113	-0.0022817	-4.3372	-0.0022954	529.2398580753736	49.279	0.4572	49.097	48.809	49.266	-0.18206	0.015983	-0.0024413	NaN	23.042	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209500			3248	10989	1918	1924							-0.056110493596634115
APMGITKLDL	10	Unmodified	_APMGITKLDL_					0	0	0			REV__ENSG00000169618|ENST00000303786|PROKR1	REV__ENSG00000169618|ENST00000303786|PROKR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2825927734375	2	529.79936	1057.58417	-0.38956	-0.00020639	3.2825	0.0017391	2.8929	0.0015327	529.8013272810138	48.507	0.4273	48.574	48.301	48.729	0.066795					20	11	3	0	0	0	0.03519	1	4842	4842		30.318	0	1	234210	+		3249	26385	1919	1925	4288	4288					0.057678404024500196
APMIKKIAF	9	Unmodified	_APMIKKIAF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8106384277344	2	509.809531	1017.60451	-0.079262	-4.0408E-05	-0.31597	-0.00016109	-0.39523	-0.00020149	509.8092144884065	49.056	0.6761	49.056	48.761	49.437	0					46	18	3	0	0	0	0.17455	1	5044	5044		94.006	35.224	1	3958500			3250	1685	1920	1926	4289	4289					0.09641055852910085
APMIKKIAF	9	Unmodified	_APMIKKIAF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.81024169921875	2	509.809531	1017.60451	-0.32436	-0.00016536	-0.10538	-5.3726E-05	-0.42974	-0.00021909	509.80931613464554	49.265	0.68919	49.112	48.829	49.518	-0.15277					48	18	3	0	0	0	0.18915	1	5055	5055		90.777	41.335	1	2956300			3251	1685	1920	1926	4290	4290					0.09641055852910085
APMIKKIAF	9	Unmodified	_APMIKKIAF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8103942871094	2	509.809531	1017.60451	-1.2004	-0.000612	0.80857	0.00041222	-0.39188	-0.00019978	509.80974358605886	48.944	0.6904	49.018	48.7	49.391	0.074196					55	18	4	0	0	0	0.13494	1	4962	4962		102.77	47.997	1	3201600			3252	1685	1920	1926	4291	4291					0.09641055852910085
APMKRQAR	8	Unmodified	_APMKRQAR_					0	0	0			REV__ENST00000383703.3_1_3:66551211-66551433:-|nuORF	REV__ENST00000383703.3_1_3:66551211-66551433:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7924499511719	2	479.274178	956.533803	0.32452	0.00015554	-1.2968	-0.00062152	-0.97227	-0.00046599	479.273444936859	63.891	0.45652	63.633	63.46	63.916	-0.25824					15	11	2	0	0	0	0.027866	1	7267	7267		20.482	0	1	100140	+		3253	31554	1921	1927	4292	4292					0.05379775587960012
APMLILLLR	9	Unmodified	_APMLILLLR_					0	0	0			REV__ENSG00000114923|ENST00000358055|SLC4A3	REV__ENSG00000114923|ENST00000358055|SLC4A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2621459960938	2	520.338455	1038.66236	-0.85582	-0.00044532	4.1015	0.0021342	3.2457	0.0016889	520.3404255871862	23.102	0.75929	23.102	22.848	23.607	0					42	17	3	0	0	0	0.024535	1	855	855		12.207	0	1	946820	+		3254	22155	1922	1928	4293	4293					0.14457317778351353
APMSAAHQL	9	Unmodified	_APMSAAHQL_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2311096191406	2	463.231645	924.448736	-0.85341	-0.00039533	1.0018	0.00046407	0.1484	6.8746E-05	463.2319867358789	35.588	0.78989	35.588	35.306	36.096	0					47	20	3	0	0	0	0.03849	3	2745	2745;2755;2768		134.81	67.484	1	2632100			3255	3135	1923	1929	4294;4295;4296	4294					-0.016510146685163818
APMSAAHQL	9	Unmodified	_APMSAAHQL_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.231689453125	2	463.231645	924.448736	-0.97975	-0.00045385	1.0839	0.00050211	0.10417	4.8256E-05	463.2320759185304	35.427	0.86626	35.405	35.085	35.951	-0.021763					55	22	5	0	0	0	0.021872	3	2714	2705;2714;2727		148.04	82.24	1	2421800			3256	3135	1923	1929	4297;4298;4299	4298					-0.016510146685163818
APMSAAHQL	9	Unmodified	_APMSAAHQL_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.2316589355469	2	463.231645	924.448736	0.15263	7.0703E-05	-0.099542	-4.6111E-05	0.053087	2.4592E-05	463.2315247208763	35.434	0.77615	35.478	35.192	35.968	0.04406					44	19	4	0	0	0	0.03849	2	2677	2677;2689		134.81	62.933	1	2357700			3257	3135	1923	1929	4300;4301	4300					-0.016510146685163818
APNAGKSTL	9	Unmodified	_APNAGKSTL_					0	0	0		ENSG00000132591|ENST00000254928|ERAL1;ENST00000578001.1_1_17:27182052-27185217:+|nuORF;nc|ENSG00000132591|O75616-2|ERAL1	ENSG00000132591|ENST00000254928|ERAL1	ENSG00000132591|ENST00000254928|ERAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.7376708984375	2	429.737617	857.460681	-1.1294	-0.00048534	1.1631	0.00049985	0.033757	1.4507E-05	429.73813615610237	24.787	1.0706	24.74	24.308	25.379	-0.047148					59	24	5	0	0	0	0.26966	1	1136	1136		79.713	16.406	1	5544000			3258	4624	1924	1930	4302	4302					0.026249253463333844
APNGGKTRI	9	Unmodified	_APNGGKTRI_					0	0	0			REV__FAT1|p.T105P|1|0.63|ENSG00000083857|chr4:186709515-186709515|T/G|missense_variant	REV__FAT1|p.T105P|1|0.63|ENSG00000083857|chr4:186709515-186709515|T/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2643127441406	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	0.67687	1	9813	9813		47.657	1.7054	1	4140300	+		3259	36022	1925	1931	4303	4303					0.054357228488470355
APNLAGKSL	9	Unmodified	_APNLAGKSL_					0	0	0			REV__ENST00000478389.5_1_20:57565995-57566166:+|nuORF	REV__ENST00000478389.5_1_20:57565995-57566166:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.7569274902344	2	435.75581	869.497067	0.34638	0.00015094	-0.75045	-0.00032701	-0.40407	-0.00017608	435.75533716399104	39.048	0.87213	38.823	38.523	39.395	-0.2257					51	23	3	0	0	0	0.34489	1	3262	3262		69.628	3.1983	1	2447300	+		3260	21190	1926	1932	4304	4304					0.05709802243052309
APNLKSQL	8	Unmodified	_APNLKSQL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.7557067871094	2	435.75581	869.497067	-0.55124	-0.00024021	0.30965	0.00013493	-0.24159	-0.00010527	435.75577782350666	39.016	0.80901	38.793	38.416	39.225	-0.22311					50	21	3	0	0	0	0.4075	2	3268	3258;3268		96.19	5.5896	1	2333900			3261	5087	1927	1933	4305;4306	4306					0.05709802243052309
APNLKSQL	8	Unmodified	_APNLKSQL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.75616455078125	2	435.75581	869.497067	0.34638	0.00015094	-0.75045	-0.00032701	-0.40407	-0.00017608	435.75533716399104	39.048	0.87213	38.823	38.523	39.395	-0.2257					51	23	3	0	0	0	0.56311	1	3250	3250		79.713	6.8333	1	2447300			3262	5087	1927	1933	4307	4307					0.05709802243052309
APNLRGSGV	9	Unmodified	_APNLRGSGV_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENSG00000166387|ENST00000299492|PPFIBP2;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENST00000528929.1_1_11:7670445-7672214:+|nuORF	nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000166387|ENST00000299492|PPFIBP2	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.74310302734375	2	435.743234	869.471915	-0.24706	-0.00010765	-0.51925	-0.00022626	-0.7663	-0.00033391	435.74317937988883	33.415	0.9156	33.415	33.096	34.011	0					62	24	4	0	0	0	0.1158	4	2403	2391;2403;2415;2432		107.01	42.8	1	4587500			3263	3066;7548	1928	1934	4308;4309;4310;4311	4309					0.031957474404862296
APNLRGSGV	9	Unmodified	_APNLRGSGV_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENSG00000166387|ENST00000299492|PPFIBP2;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENST00000528929.1_1_11:7670445-7672214:+|nuORF	nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000166387|ENST00000299492|PPFIBP2	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.743408203125	2	435.743234	869.471915	-0.52652	-0.00022943	0.40529	0.0001766	-0.12123	-5.2824E-05	435.74330948061373	33.267	0.56998	33.274	32.928	33.498	0.0066223					43	15	4	0	0	0	0.12914	3	2356	2356;2367;2379		104.06	40.751	1	5002100			3264	3066;7548	1928	1934	4312;4313;4314	4312					0.031957474404862296
APNLRGSGV	9	Unmodified	_APNLRGSGV_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1;ENSG00000166387|ENST00000299492|PPFIBP2;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENST00000528929.1_1_11:7670445-7672214:+|nuORF	nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000166387|ENST00000299492|PPFIBP2	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.7431640625	2	435.743234	869.471915	0.88385	0.00038513	-0.92904	-0.00040482	-0.045192	-1.9692E-05	435.74272029461696	33.135	0.54615	33.192	32.877	33.423	0.056572					40	14	3	0	0	0	0.1158	4	2310	2300;2310;2322;2334		107.01	39.514	1	4722700			3265	3066;7548	1928	1934	4315;4316;4317;4318	4316					0.031957474404862296
APNLSFSTSV	10	Unmodified	_APNLSFSTSV_					0	0	0		nc|ENSG00000054282|Q86SQ7-4|SDCCAG8;ENSG00000054282|ENST00000366541|SDCCAG8;nc|ENSG00000054282|Q86SQ7-2|SDCCAG8;nc|ENSG00000054282|Q86SQ7-3|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.76251220703125	2	511.761289	1021.50803	0.37128	0.00019001	0.10448	5.3471E-05	0.47576	0.00024348	511.7613558416419	94.971	1.0715	94.848	94.219	95.291	-0.12251					42	24	2	0	0	0	1.0719	1	11731	11731		36.447	2.2742	1	202270			3266	1172	1929	1935	4319	4319					-0.0018684017333043812
APNPPPTGP	9	Unmodified	_APNPPPTGP_					0	0	0			REV__ENST00000512871.1_1_5:126859171-126859306:+|nuORF	REV__ENST00000512871.1_1_5:126859171-126859306:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.21881103515625	2	424.21906	846.423567	0.15091	6.4021E-05	-1.3415	-0.00056911	-1.1906	-0.00050509	424.2184034867315	98.49	2.0564	98.5	97.728	99.785	0.010239					126	47	5	0	0	0	0.85329	1	12598	12598		35.618	0	1	7266600	+		3267	25723	1930	1936	4320	4320					-0.005787461994259502
APNWSNEPG	9	Unmodified	_APNWSNEPG_					0	0	0			REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	REV__ENST00000392657.7_1_11:128893918-128894020:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.2153625488281	2	486.214506	970.414459	0.42603	0.00020714	-0.06045	-2.9391E-05	0.36558	0.00017775	486.21443569005066	101.78	2.0865	101.61	100.71	102.8	-0.17178					129	49	3	0	0	0	0.83071	1	12667	12667		37.159	1.5408	1	202350	+		3268	31618	1931	1937	4321	4321					-0.07193139555761263
APPAEKPAA	9	Unmodified	_APPAEKPAA_					0	0	0		ENSG00000129951|ENST00000520876|PLPPR3;nc|ENSG00000129951|Q6T4P5-2|PLPPR3;nc|ENSG00000129951|Q6T4P5-3|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.234619140625	2	426.23471	850.454868	-0.51754	-0.00022059	-0.096801	-4.126E-05	-0.61434	-0.00026185	426.2348480408077	28.026	1.5703	28.022	27.436	29.006	-0.0042019					177	38	6	0	0	0	0.23085	1	1573	1573		84.916	5.4645	1	70064000			3269	4374	1932	1938	4322	4322					0.023658268346594014
APPCRAAPQP	10	Unmodified	_APPCRAAPQP_					0	0	0		ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.2594299316406	2	504.258194	1006.50183	0.35337	0.00017819	1.5752	0.00079431	1.9286	0.0009725	504.2593070384721	22.676	1.0174	22.487	22.191	23.208	-0.18894					59	21	5	0	0	0	1.0393	1	852	852		40.778	5.1599	1	3235100			3270	16217	1933	1939	4323	4323					-0.0011563688585738419
APPEWTILI	9	Unmodified	_APPEWTILI_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3117065429688	2	520.294768	1038.57498	-0.81492	-0.000424	-3.8677	-0.0020123	-4.6826	-0.0024363	520.2930136697036	52.98	0.55177	52.98	52.75	53.302	0					21	14	2	0	0	0	0.024436	1	5755	5755		38.806	0	1	403240	+		3271	27928	1934	1940	4324	4324					0.057238151084447964
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.317138671875	2	584.317097	1166.61964	-1.6923	-0.00098884	2.188	0.0012785	0.49574	0.00028967	584.3184908417343	22.04	1.31	22.04	21.723	23.033	0					67	27	4	0	0	0	0.80817	2	735	735;752		60.118	24.5	1	667770			3272	9474	1935	1941	4325;4326	4325					0.04299638974453046
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.31689453125	2	584.317097	1166.61964	-1.376	-0.000804	1.2654	0.00073938	-0.11059	-6.4619E-05	584.3177160482298	22.107	0.99725	22.032	21.651	22.648	-0.075296					68	20	4	0	0	0	0.61732	2	734	734;747		75.043	27.386	1	518080			3273	9474	1935	1941	4327;4328	4327					0.04299638974453046
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.3173828125	2	584.317097	1166.61964	-0.61334	-0.00035838	0.59165	0.00034571	-0.021693	-1.2676E-05	584.3173839058031	21.996	0.96656	22.068	21.684	22.651	0.071487					62	19	4	0	0	0	0.47897	2	692	692;702		90.601	46.484	1	538550			3274	9474	1935	1941	4329;4330	4329					0.04299638974453046
APPHGLSSAP	10	Unmodified	_APPHGLSSAP_					0	0	0			REV__ENSG00000133246|ENST00000423345|PRAM1	REV__ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7541809082031	2	467.243067	932.47158	0.30943	0.00014458	3.2676	0.0015268	3.577	0.0016713	467.24442654907915	36.502	2.1756	36.54	35.927	38.103	0.038044					125	59	3	0	0	0	0.03519	1	3019	3019		53.351	19.836	1	922360	+		3275	23364	1936	1942	4331	4331					0.0026432772060616117
APPIIGYL	8	Unmodified	_APPIIGYL_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK;ENSG00000170485|ENST00000335681|NPAS2	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.25115966796875	2	422.252372	842.49019	0.51866	0.00021901	-4.202	-0.0017743	-3.6834	-0.0015553	422.25046003506577	50.814	0.8727	50.703	50.416	51.288	-0.11163					54	22	4	0	0	0	0.9599	1	5178	5178		43.626	9.4535	1	4066600			3276	4835	1937	1943	4332	4332					0.06264489362456516
APPLKSVPRH	10	Unmodified	_APPLKSVPRH_					0	0	0			REV__ENSG00000054967|ENST00000064780|RELT	REV__ENSG00000054967|ENST00000064780|RELT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3300170898438	2	551.330008	1100.64546	0.59508	0.00032809	-0.82872	-0.0004569	-0.23363	-0.00012881	551.3294572416751	18.626	0.79143	18.47	18.197	18.989	-0.15637					35	15	3	0	0	0	0.94316	1	323	323		51.193	3.2771	1	546230	+		3277	20196	1938	1944	4333	4333					0.09916533216733114
APPLLPTI	8	Unmodified	_APPLLPTI_					0	0	0			REV__ENST00000579003.1_1_17:56408513-56408597:-|nuORF	REV__ENST00000579003.1_1_17:56408513-56408597:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.21246337890625	2	411.260197	820.50584	0.07973	3.279E-05	3.4133	0.0014038	3.4931	0.0014366	411.2614961510464	46.938	1.0828	46.841	46.403	47.486	-0.096649					48	29	2	0	0	0	0.027866	1	4520	4520		13.775	0	1	270340	+		3278	35498	1939	1945	4334	4334					0.0884077587951424
APPPIAPKP	9	Unmodified	_APPPIAPKP_					0	0	0		ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6	ENSG00000180263|ENST00000343958|FGD6	ENSG00000180263|ENST00000343958|FGD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.2710266113281	2	444.271096	886.527639	-0.34916	-0.00015512	0.46064	0.00020465	0.11148	4.9529E-05	444.2711415412818	38.528	1.7332	38.446	38.05	39.783	-0.082516					110	47	4	0	0	0	0.40179	1	3221	3221		65.803	7.9919	1	1590300			3279	8969	1940	1946	4335	4335					0.079835806280812
APPPNNFFV	9	Unmodified	_APPPNNFFV_					0	0	0			REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2826232910156	2	501.75581	1001.49707	0.53284	0.00026736	2.7346	0.0013721	3.2674	0.0016394	501.7575354516478	96.72	0.52887	96.726	96.528	97.057	0.0065079					14	11	2	0	0	0	0.024535	1	12335	12335		25.45	1.2474	1	75224	+		3280	23847	1941	1947	4336	4336					-0.0036219775695371936
APPPPAHAL	9	Unmodified	_APPPPAHAL_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MSMS	OPSCC_39_ClassI_Rep-1	1	435.74505615234375	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.654	1	35.654	35.154	36.154	0								0	0	0	0.069706	1	2762	2762		100.36	27.74	1				3281	8931	1942	1948	4337	4337					0.03597836934170573
APPPPAHAL	9	Unmodified	_APPPPAHAL_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MSMS	OPSCC_39_ClassI_Rep-1	1	435.7449645996094	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.742	1	35.742	35.242	36.242	0								0	0	0	0.52778	1	2775	2775		49.211	17.256	1				3282	8931	1942	1948	4338	4338					0.03597836934170573
APPPPAHAL	9	Unmodified	_APPPPAHAL_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MSMS	OPSCC_39_ClassI_Rep-3	3	435.74530029296875	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.409	1	35.453	34.953	35.953	0.04406								0	0	0	0.12943	1	2669	2669		85.909	25.506	1				3283	8931	1942	1948	4339	4339					0.03597836934170573
APPPPAHAL	9	Unmodified	_APPPPAHAL_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MSMS	OPSCC_39_ClassI_Rep-3	3	435.7451171875	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.572	1	35.616	35.116	36.116	0.04406								0	0	0	0.41653	1	2694	2694		60.404	11.193	1				3284	8931	1942	1948	4340	4340					0.03597836934170573
APPPPPKAL	9	Unmodified	_APPPPPKAL_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MSMS	OPSCC_39_ClassI_Rep-1	1	444.27044677734375	2	444.271096	886.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.598	1	38.598	38.098	39.098	0								0	0	0	0.45465	1	3249	3249		57.811	17.239	1				3285	10346	1943	1949	4341	4341					0.079835806280812
APPPPPKAL	9	Unmodified	_APPPPPKAL_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.27081298828125	2	444.271096	886.527639	-0.34916	-0.00015512	0.46064	0.00020465	0.11148	4.9529E-05	444.2711415412818	38.528	1.7332	38.446	38.05	39.783	-0.082516					110	47	4	0	0	0	0.67308	1	3232	3232		47.916	1.9636	1	1590300			3286	10346	1943	1949	4342	4342					0.079835806280812
APPPPPKAL	9	Unmodified	_APPPPPKAL_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.2705078125	2	444.271096	886.527639	-1.1566	-0.00051384	1.1775	0.00052312	0.020892	9.2817E-06	444.2714719726776	38.687	1.7578	38.714	38.298	40.055	0.027275					117	48	4	0	0	0	0.67308	1	3216	3216		47.916	9.1095	1	1672200			3287	10346	1943	1949	4343	4343					0.079835806280812
APPPPSAPN	9	Unmodified	_APPPPSAPN_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.21856689453125	2	424.21906	846.423567	0.068932	2.9242E-05	-1.3324	-0.00056525	-1.2635	-0.00053601	424.21842173588857	95.216	1.646	95.064	94.324	95.97	-0.15186					65	37	2	0	0	0	0.80658	1	11726	11726		38.806	0	1	275470			3288	5639	1944	1950	4344	4344					-0.005787461994373189
APPPVPPKPS	10	Unmodified	_APPPVPPKPS_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3162841796875	2	493.78711	985.559667	0.32405	0.00016001	-2.3239	-0.0011475	-1.9999	-0.0009875	493.7856853926636	18.712	0.29707	18.556	18.346	18.643	-0.15637					10	5	3	0	0	0	0.03519	1	312	312		21.96	0	1	80708			3289	9552	1945	1951	4345	4345					0.06630948311226348
APPPVPPKPS	10	Unmodified	_APPPVPPKPS_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.78711	985.559667	0.42511	0.00020991	-1.9685	-0.00097204	-1.5434	-0.00076212	493.7857036293941	18.788	0.29719	18.584	18.361	18.658	-0.20371	0.014005	0.00017706	NaN	15.642	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117440			3290	9552	1945	1951							0.06630948311226348
APPPYLPPQ	9	Unmodified	_APPPYLPPQ_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2369689941406	2	490.26601	978.517468	0.36963	0.00018122	-1.5451	-0.00075751	-1.1755	-0.00057629	490.2644596511543	99.423	1.1806	99.423	98.691	99.871	0					47	26	3	0	0	0	0.024183	1	12689	12689		50.025	12.865	1	89338			3291	4041	1946	1952	4346	4346					0.027349729028628644
APPREVEV	8	Unmodified	_APPREVEV_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;nc|ENSG00000167851|Q9UGN4-2|CD300A;ENST00000582319.5_1_17:72477795-72480262:+|nuORF;nc|ENSG00000167851|Q9UGN4-3|CD300A	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7276611328125	2	448.745442	895.476331	-0.1457	-6.5382E-05	1.2447	0.00055855	1.099	0.00049317	448.74577073371785	28.984	0.54425	29.065	28.826	29.371	0.080811					22	13	2	0	0	0	0.027866	1	1717	1717		33.516	9.3128	1	268370			3292	7743	1947	1953	4347	4347					0.02441211863379067
APPREVEV	8	Unmodified	_APPREVEV_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;nc|ENSG00000167851|Q9UGN4-2|CD300A;ENST00000582319.5_1_17:72477795-72480262:+|nuORF;nc|ENSG00000167851|Q9UGN4-3|CD300A	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.745442	895.476331	-1.0714	-0.00048077	1.7719	0.00079511	0.70048	0.00031434	448.7460867912293	29.349	0.61897	29.349	29.073	29.692	0	0.10681	0.00030313	NaN	42.474	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276640			3293	7743	1947	1953							0.02441211863379067
APPREVEV	8	Unmodified	_APPREVEV_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;nc|ENSG00000167851|Q9UGN4-2|CD300A;ENST00000582319.5_1_17:72477795-72480262:+|nuORF;nc|ENSG00000167851|Q9UGN4-3|CD300A	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	448.745442	895.476331	-0.35233	-0.0001581	1.2299	0.00055193	0.87762	0.00039383	448.74578040681087	29.31	0.73708	29.313	29.055	29.792	0.0031357	0.071066	-0.00018322	NaN	42.474	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361680			3294	7743	1947	1953							0.02441211863379067
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.23773193359375	2	458.237784	914.461016	-0.58642	-0.00026872	0.95398	0.00043715	0.36756	0.00016843	458.23800926729785	35.781	1.0883	35.781	35.455	36.543	0					86	29	5	0	0	0	0.19099	1	2766	2766		90.37	21.583	1	3278800			3295	10110	1948	1954	4348	4348					0.0003634506618936939
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.2379150390625	2	458.237784	914.461016	-0.94791	-0.00043437	1.352	0.00061952	0.40406	0.00018516	458.23821894247067	35.632	1.1362	35.61	35.233	36.369	-0.022305					85	30	4	0	0	0	0.19099	2	2723	2723;2733		90.37	21.583	1	3165600			3296	10110	1948	1954	4349;4350	4349					0.0003634506618936939
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2378845214844	2	458.237784	914.461016	-0.1144	-5.2423E-05	0.51342	0.00023527	0.39902	0.00018285	458.2378113601701	35.641	1.4623	35.685	35.192	36.654	0.04406					112	39	5	0	0	0	0.26966	1	2690	2690		79.713	2.9384	1	2859000			3297	10110	1948	1954	4351	4351					0.0003634506618936939
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.237784	914.461016	-0.49439	-0.00022655	-1.8657	-0.00085491	-2.36	-0.0010815	458.23662576277275	35.718	0.62554	35.509	35.223	35.848	-0.20874	-0.095238	-0.0021918	NaN	90.37	34	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847980			3298	10110	1948	1954							0.0003634506618936939
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.237784	914.461016	-0.19865	-9.1029E-05	-2.4012	-0.0011003	-2.5999	-0.0011914	458.2364294468439	35.622	0.42574	35.435	35.26	35.686	-0.18675	-0.16891	-0.0026827	NaN	90.37	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1198400			3299	10110	1948	1954							0.0003634506618936939
APPSAPRDL	9	Unmodified	_APPSAPRDL_					0	0	0			REV__ENSG00000128564|ENST00000249330|VGF	REV__ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.23004150390625	2	462.250892	922.48723	-0.46998	-0.00021725	-0.35005	-0.00016181	-0.82003	-0.00037906	462.2505410941094	38.997	0.91378	39.021	38.648	39.562	0.023727					41	24	2	0	0	0	0.024523	1	3342	3342		10.265	0	1	252680	+		3300	22991	1949	1955	4352	4352					0.022886142376592034
APPSLPRKLLC	11	Unmodified	_APPSLPRKLLC_					0	0	0		ENST00000315005.7_1_17:42827993-42828242:+|nuORF	ENST00000315005.7_1_17:42827993-42828242:+|nuORF	ENST00000315005.7_1_17:42827993-42828242:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	598.3568725585938	2	597.855001	1193.69545	4.5575	0.0027247	-1.495	-0.00089382	3.0625	0.0018309	597.8539809164914	17.597	0.24863	17.658	17.537	17.786	0.060358					8	6	2	0	0	0	1.0651	1	161	161		20.947	5.3051	1	21721			3301	12126	1950	1956	4353	4353					0.10634899830415634
APPSLPRKLLC	11	Unmodified	_APPSLPRKLLC_					0	0	0		ENST00000315005.7_1_17:42827993-42828242:+|nuORF	ENST00000315005.7_1_17:42827993-42828242:+|nuORF	ENST00000315005.7_1_17:42827993-42828242:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	597.855001	1193.69545	2.1014	0.0012564	1.5134	0.00090478	3.6148	0.0021611	597.855929496	17.44	0.24832	17.44	17.3	17.548	0	-0.10889	0.00044789	NaN	20.947	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25582			3302	12126	1950	1956							0.10634899830415634
APPTLVLH	8	Unmodified	_APPTLVLH_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.23870849609375	2	424.255446	846.496338	-0.53521	-0.00022706	1.3876	0.00058868	0.85236	0.00036162	424.2559133804677	21.743	0.43496	21.531	21.363	21.798	-0.2128					14	8	2	0	0	0	0.027866	1	702	702		14.664	9.9823	1	37057	+		3303	26520	1951	1957	4354	4354					0.06695007593975788
APPTLVLH	8	Unmodified	_APPTLVLH_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	424.255446	846.496338	-1.0871	-0.00046121	0.15759	6.6859E-05	-0.92952	-0.00039435	424.2553936582136	21.441	0.43202	21.441	21.244	21.676	0	-0.026627	8.6216E-05	NaN	14.664	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23204	+		3304	26520	1951	1957							0.06695007593975788
APPTLVLH	8	Unmodified	_APPTLVLH_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	424.255446	846.496338	-0.51405	-0.00021809	0.18071	7.6668E-05	-0.33334	-0.00014142	424.255491385535	21.476	0.28975	21.386	21.255	21.545	-0.090094	-0.082052	0.00010583	NaN	14.664	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34610	+		3305	26520	1951	1957							0.06695007593975788
APPTLVLH	8	Unmodified	_APPTLVLH_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	424.255446	846.496338	0.045312	1.9224E-05	-1.2579	-0.00053367	-1.2126	-0.00051444	424.2550014996579	21.305	0.38631	21.377	21.205	21.591	0.071487	-0.091342	-0.0011148	NaN	14.664	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28263	+		3306	26520	1951	1957							0.06695007593975788
APPTLVLH	8	Unmodified	_APPTLVLH_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	424.255446	846.496338	0.56524	0.00023981	-5.9135	-0.0025088	-5.3482	-0.002269	424.25486055030467	21.579	0.52639	21.402	21.113	21.64	-0.17721	-0.066375	-0.0050652	NaN	14.664	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24849	+		3307	26520	1951	1957							0.06695007593975788
APPVFMTP	8	Unmodified	_APPVFMTP_					0	0	0			REV__nc|ENSG00000137073|Q5T6F2-2|UBAP2	REV__nc|ENSG00000137073|Q5T6F2-2|UBAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.23541259765625	2	430.222757	858.430961	0.55498	0.00023877	-1.4002	-0.00060241	-0.84524	-0.00036364	430.2217691163999	25.104	0.42977	25.185	24.825	25.254	0.080088					10	9	2	0	0	0	0.027866	1	1073	1073		20.482	0	1	41976	+		3308	23721	1952	1958	4355	4355					-0.003917299233535232
APQHDRNEL	9	Unmodified	_APQHDRNEL_					0	0	0		ENST00000404241.6_1_22:39916751-39917530:+|nuORF;ENST00000393544.2_1_11:113660942-113661119:+|nuORF	ENST00000404241.6_1_22:39916751-39917530:+|nuORF	ENST00000404241.6_1_22:39916751-39917530:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2643432617188	2	540.265062	1078.51557	-0.97415	-0.0005263	0.54614	0.00029506	-0.428	-0.00023123	540.2653298279427	21.078	0.7321	20.988	20.72	21.452	-0.090092					36	14	3	0	0	0	0.76818	1	617	617		41.427	2.6205	1	251710			3309	13451	1953	1959	4356	4356					-0.020546878530694812
APQHDRNEL	9	Unmodified	_APQHDRNEL_					0	0	0		ENST00000404241.6_1_22:39916751-39917530:+|nuORF;ENST00000393544.2_1_11:113660942-113661119:+|nuORF	ENST00000404241.6_1_22:39916751-39917530:+|nuORF	ENST00000404241.6_1_22:39916751-39917530:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	540.265062	1078.51557	-1.4554	-0.00078629	1.1627	0.00062815	-0.29272	-0.00015814	540.2656759668722	20.97	0.83457	20.97	20.656	21.491	0	-0.0089438	0.00024953	NaN	41.427	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211670			3310	13451	1953	1959							-0.020546878530694812
APQPSPRF	8	Unmodified	_APQPSPRF_					0	0	0			REV__ENST00000282096.8_1_11:14665391-14665622:+|nuORF	REV__ENST00000282096.8_1_11:14665391-14665622:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	450.240966796875	2	450.240327	898.466101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.002	1	31.014	30.514	31.514	0.011797								0	0	0	0.44619	1	2021	2021		60.972	5.4677	1		+		3311	29892	1955	1960	4357	4357					0.012806489287982004
APQRSQSPL	9	Unmodified	_APQRSQSPL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2666320800781	2	492.267073	982.519593	-0.74711	-0.00036778	0.17051	8.3935E-05	-0.5766	-0.00028384	492.2670686440371	28.47	1.3358	28.47	28.151	29.487	0					69	32	3	0	0	0	0.021872	3	1673	1649;1661;1673		148.04	46.79	1	7784700			3312	6241	1956	1961	4358;4359;4360	4360					0.027634016406636874
APQRSQSPL	9	Unmodified	_APQRSQSPL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2668151855469	2	492.267073	982.519593	-0.50507	-0.00024863	-0.16305	-8.0262E-05	-0.66812	-0.00032889	492.2669044624372	28.44	1.9088	28.436	28.04	29.949	-0.0042019					100	46	4	0	0	0	0.03849	5	1653	1630;1640;1653;1664;1677		134.81	41.668	1	6577900			3313	6241	1956	1961	4361;4362;4363;4364;4365	4363					0.027634016406636874
APQRSQSPL	9	Unmodified	_APQRSQSPL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2668151855469	2	492.267073	982.519593	-0.45406	-0.00022352	-0.34007	-0.00016741	-0.79413	-0.00039092	492.26692916929613	28.107	0.87359	28.188	27.91	28.784	0.080811					51	20	4	0	0	0	0.03201	4	1547	1538;1547;1558;1572		139.97	41.721	1	6361500			3314	6241	1956	1961	4366;4367;4368;4369	4367					0.027634016406636874
APQSAHAAF	9	Unmodified	_APQSAHAAF_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.240966796875	2	450.222134	898.429715	-0.12905	-5.8102E-05	1.0134	0.00045628	0.88439	0.00039817	450.2222983434152	31.05	0.75402	31.062	30.791	31.545	0.011797					33	17	3	0	0	0	0.023635	1	2021	2021		76.774	10.877	1	743780			3315	7526	1957	1962	4370	4370					-0.023562279679140374
APQYMNLLM	9	Unmodified	_APQYMNLLM_					0	0	0		ENSG00000120162|ENST00000262244|MOB3B	ENSG00000120162|ENST00000262244|MOB3B	ENSG00000120162|ENST00000262244|MOB3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7637329101562	2	540.764463	1079.51437	-0.5647	-0.00030537	0.37531	0.00020296	-0.18938	-0.00010241	540.7645142367262	49.686	1.4253	49.686	49.249	50.675	0					129	40	5	0	0	0	0.75282	1	5183	5183		42.474	1.6963	1	5786300			3316	3797	1958	1963	4371	4371					-0.022203615378430186
APRAAARGP	9	Unmodified	_APRAAARGP_					0	0	0		ENST00000345136.7_2_8:145013531-145013642:-|nuORF	ENST00000345136.7_2_8:145013531-145013642:-|nuORF	ENST00000345136.7_2_8:145013531-145013642:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.75128173828125	2	433.751393	865.488233	-0.11927	-5.1733E-05	0.42229	0.00018317	0.30302	0.00013143	433.7514853429107	20.01	1.9787	19.905	19.066	21.045	-0.10477					82	40	3	0	0	0	0.75282	1	495	495		42.474	1.9018	1	1132100			3317	12563	1959	1964	4372	4372					0.050108733972138
APRAAPPAGAF	11	Unmodified	_APRAAPPAGAF_					0	0	0		ENST00000369217.8_1_6:100014911-100016464:-|nuORF;ENST00000523985.5_1_6:100009545-100016464:-|nuORF	ENST00000369217.8_1_6:100014911-100016464:-|nuORF	ENST00000369217.8_1_6:100014911-100016464:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.2796020507812	2	513.279983	1024.54541	-0.015591	-8.0027E-06	-0.40415	-0.00020744	-0.41974	-0.00021545	513.2797598415353	42.952	0.87631	42.983	42.609	43.486	0.030827					72	23	4	0	0	0	0.53206	2	3938	3926;3938		74.255	17.534	1	2856200			3318	12917	1960	1965	4373;4374	4374					0.03412295882912986
APRAASTESL	10	Unmodified	_APRAASTESL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000527144.5_1_8:145138126-145139470:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.76397705078125	2	501.764363	1001.51417	-0.4024	-0.00020191	0.0060888	3.0551E-06	-0.39631	-0.00019885	501.7642778391244	31.727	1.0969	31.727	31.089	32.186	0					47	26	3	0	0	0	0.72729	1	2139	2139		65.465	6.6834	1	1831700			3319	10056	1961	1966	4375	4375					0.013476780581868297
APRAASTESL	10	Unmodified	_APRAASTESL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000527144.5_1_8:145138126-145139470:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.76373291015625	2	501.764363	1001.51417	-0.36921	-0.00018526	0.12912	6.4789E-05	-0.24009	-0.00012047	501.7643257679951	31.619	1.064	31.631	30.999	32.063	0.011797					47	25	3	0	0	0	0.6365	1	2110	2110		72.879	1.0018	1	1917800			3320	10056	1961	1966	4376	4376					0.013476780581868297
APRAASTESL	10	Unmodified	_APRAASTESL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000527144.5_1_8:145138126-145139470:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7638854980469	2	501.764363	1001.51417	-0.23043	-0.00011562	-0.087983	-4.4147E-05	-0.31841	-0.00015977	501.7642193662153	31.367	0.6779	31.436	31.208	31.886	0.06896					38	16	3	0	0	0	0.50517	1	2039	2039		87.696	8.2454	1	1786900			3321	10056	1961	1966	4377	4377					0.013476780581868297
APRAGEQGEAM	11	Unmodified	_APRAGEQGEAM_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.7592163085938	2	558.758755	1115.50296	-0.27791	-0.00015529	0.20857	0.00011654	-0.069345	-3.8747E-05	558.758726258383	26.996	0.66165	26.996	26.7	27.361	0					41	16	3	0	0	0	0.61955	1	1424	1424		68.626	22.654	1	1599200			3322	18822	1962	1967	4378	4378					-0.05017467307584411
APRAGEQGEAM	11	Unmodified	_APRAGEQGEAM_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.7589111328125	2	558.758755	1115.50296	-0.68246	-0.00038133	0.41346	0.00023102	-0.269	-0.00015031	558.7588492588682	26.946	0.72828	26.933	26.662	27.391	-0.012983					45	18	4	0	0	0	0.79085	1	1407	1407		58.246	1.5252	1	2111900			3323	18822	1962	1967	4379	4379					-0.05017467307584411
APRAGEQGEAM	11	Unmodified	_APRAGEQGEAM_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.7592163085938	2	558.758755	1115.50296	-0.55225	-0.00030857	0.43008	0.00024031	-0.12217	-6.8261E-05	558.7588220506025	26.615	0.61705	26.697	26.414	27.031	0.081291					40	14	4	0	0	0	0.67679	2	1321	1321;1334		65.157	15.716	1	1190000			3324	18822	1962	1967	4380;4381	4380					-0.05017467307584411
APRAGEQGEAM	11	Oxidation (M)	_APRAGEQGEAM(Oxidation (M))_		APRAGEQGEAM(1)		APRAGEQGEAM(78)	0	0	1		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.7559814453125	2	566.756212	1131.49787	1.2443	0.00070523	-1.2661	-0.00071755	-0.021729	-1.2315E-05	566.755330254316	19.818	2.1544	19.884	19.242	21.396	0.066195					101	43	3	0	0	0	0.47044	3	366	366;378;390		78.264	12.058	1	247290			3325	18822	1962	1968	4382;4383;4384	4382		594			-0.0626177117021598
APRAGNATPL	10	Unmodified	_APRAGNATPL_					0	0	0			REV__ENST00000562735.5_1_16:2198751-2203097:+|nuORF	REV__ENST00000562735.5_1_16:2198751-2203097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2711181640625	2	484.269616	966.524678	-0.70225	-0.00034008	0.51272	0.0002483	-0.18953	-9.1783E-05	484.26971229749256	31.364	0.86922	31.364	30.92	31.789	0					71	20	5	0	0	0	0.69662	1	2075	2075		67.494	4.5152	1	3368400	+		3326	26203	1963	1969	4385	4385					0.04007705503283887
APRAGNATPL	10	Unmodified	_APRAGNATPL_					0	0	0			REV__ENST00000562735.5_1_16:2198751-2203097:+|nuORF	REV__ENST00000562735.5_1_16:2198751-2203097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2701416015625	2	484.269616	966.524678	-0.34493	-0.00016704	0.21914	0.00010612	-0.12578	-6.0913E-05	484.2695766670706	31.309	0.70725	31.321	30.956	31.663	0.011799					59	16	5	0	0	0	0.66532	1	2067	2067		69.628	0.8408	1	3229500	+		3327	26203	1963	1969	4386	4386					0.04007705503283887
APRAGNATPL	10	Unmodified	_APRAGNATPL_					0	0	0			REV__ENST00000562735.5_1_16:2198751-2203097:+|nuORF	REV__ENST00000562735.5_1_16:2198751-2203097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2712707519531	2	484.269616	966.524678	-0.56038	-0.00027137	0.26436	0.00012802	-0.29602	-0.00014335	484.2696104545332	31.034	0.74202	31.103	30.744	31.486	0.068962					57	17	4	0	0	0	0.80817	1	1980	1980		60.118	6.7668	1	2863200	+		3328	26203	1963	1969	4387	4387					0.04007705503283887
APRALIWK	8	Unmodified	_APRALIWK_					0	0	0		ENST00000578411.1_1_17:28120861-28257182:-|nuORF	ENST00000578411.1_1_17:28120861-28257182:-|nuORF	ENST00000578411.1_1_17:28120861-28257182:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77764892578125	2	477.797812	953.581071	0.34289	0.00016383	3.3372	0.0015945	3.6801	0.0017584	477.79977423257304	27.282	0.89816	27.282	26.867	27.765	0					30	23	2	0	0	0	0.027866	1	1464	1464		31.955	0	1	297320			3329	17130	1964	1970	4388	4388					0.10242378130601537
APRALLPQ	8	Unmodified	_APRALLPQ_					0	0	0		ENSG00000175040|ENST00000309575|CHST2	ENSG00000175040|ENST00000309575|CHST2	ENSG00000175040|ENST00000309575|CHST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.7167053222656	2	433.266345	864.518136	-0.27347	-0.00011849	0.32149	0.00013929	0.048016	2.0804E-05	433.26637915611076	47.978	0.71465	47.978	47.529	48.243	0					29	21	2	0	0	0	0.027866	1	4787	4787		26.796	0	1	385960			3330	8523	1965	1971	4389	4389					0.08045812342561476
APRAPRAL	8	Unmodified	_APRAPRAL_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1;ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.71990966796875	2	426.264136	850.51372	0.53941	0.00022993	-1.9513	-0.00083178	-1.4119	-0.00060185	426.26299547676047	21.168	0.62339	20.991	20.822	21.445	-0.17721					15	12	2	0	0	0	0.027866	1	692	692		24.203	5.8783	1	43368			3331	2127	1966	1972	4390	4390					0.08248347919652588
APRAPRAL	8	Unmodified	_APRAPRAL_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1;ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	426.264136	850.51372	0.40478	0.00017254	-1.6432	-0.00070043	-1.2384	-0.00052789	426.2630278388515	21.321	0.63334	21.131	20.882	21.516	-0.19072	0.058793	-0.0016948	NaN	24.203	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43020			3332	2127	1966	1972							0.08248347919652588
APRAPRAL	8	Unmodified	_APRAPRAL_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1;ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	426.264136	850.51372	-1.0365	-0.00044184	1.2306	0.00052456	0.19405	8.2715E-05	426.26447652688177	21.306	0.48869	21.094	20.921	21.41	-0.2128	0.021784	0.00075519	NaN	24.203	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67753			3333	2127	1966	1972							0.08248347919652588
APRERGSSL	9	Unmodified	_APRERGSSL_					0	0	0		ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000124198|ENST00000371917|ARFGEF2	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7648010253906	2	486.764697	971.514842	-0.34403	-0.00016746	0.33199	0.0001616	-0.01204	-5.8607E-06	486.7647949477978	19.918	1.1581	19.813	19.411	20.569	-0.10477					56	23	4	0	0	0	0.62163	1	463	463		51.335	3.6781	1	1373300			3334	116	1967	1973	4391	4391					0.0279451749790951
APRFNTEQI	9	Unmodified	_APRFNTEQI_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2796020507812	2	538.28018	1074.54581	-0.85201	-0.00045862	-0.49149	-0.00026456	-1.3435	-0.00072318	538.2797351256702	45.551	0.64713	45.595	45.344	45.991	0.04388					45	18	3	0	0	0	0.37611	1	4382	4382		67.494	6.5217	1	3782400			3335	7789	1968	1974	4392	4392					0.011516708121462216
APRGAPVAL	9	Unmodified	_APRGAPVAL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2588195800781	2	426.25852	850.502486	-0.15619	-6.6577E-05	0.76965	0.00032807	0.61346	0.00026149	426.2587293361125	40.842	0.63788	40.842	40.551	41.189	0					45	17	3	0	0	0	0.80658	1	3635	3635		38.806	3.6054	1	2217500	+		3336	22884	1969	1975	4393	4393					0.07125525825506429
APRGAPVAL	9	Unmodified	_APRGAPVAL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	426.25852	850.502486	-0.15619	-6.6577E-05	0.76965	0.00032807	0.61346	0.00026149	426.2587293361125	40.842	0.63788	40.842	40.551	41.189	0	-0.067785	0.00026155	NaN	38.806	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2217500	+		3337	22884	1969	1975							0.07125525825506429
APRGAPVAL	9	Unmodified	_APRGAPVAL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.25852	850.502486	0.49857	0.00021252	0.072791	3.1028E-05	0.57136	0.00024355	426.25841191001655	41.001	0.64013	40.878	40.584	41.224	-0.12318	-0.031667	-0.00033253	NaN	38.806	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2123100	+		3338	22884	1969	1975							0.07125525825506429
APRGAPVAL	9	Unmodified	_APRGAPVAL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.25852	850.502486	0.087687	3.7377E-05	0.46471	0.00019809	0.5524	0.00023546	426.2586046812753	40.986	0.66146	41.009	40.696	41.358	0.023003	0.099452	1.5858E-06	NaN	38.806	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2154900	+		3339	22884	1969	1975							0.07125525825506429
APRGATVPSV	10	Unmodified	_APRGATVPSV_					0	0	0			REV__ENST00000490468.5_1_21:47744088-47766690:+|nuORF	REV__ENST00000490468.5_1_21:47744088-47766690:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7738342285156	2	477.771991	953.529429	0.51545	0.00024627	3.7567	0.0017949	4.2722	0.0020411	477.7736660208479	69.149	1.1652	69.149	68.789	69.954	0					64	29	4	0	0	0	0.40067	3	8310	8310;8334;8347		98.629	15.342	1	7597900	+		3340	33701	1970	1976	4394;4395;4396	4394					0.05080589646047429
APRGATVPSV	10	Unmodified	_APRGATVPSV_					0	0	0			REV__ENST00000490468.5_1_21:47744088-47766690:+|nuORF	REV__ENST00000490468.5_1_21:47744088-47766690:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7738037109375	2	477.771991	953.529429	0.79396	0.00037933	3.5334	0.0016882	4.3274	0.0020675	477.7736015027622	69.46	1.0599	69.167	68.86	69.92	-0.29292					64	26	4	0	0	0	0.50517	2	8335	8335;8367		87.696	3.2864	1	7163800	+		3341	33701	1970	1976	4397;4398	4397					0.05080589646047429
APRGATVPSV	10	Unmodified	_APRGATVPSV_					0	0	0			REV__ENST00000490468.5_1_21:47744088-47766690:+|nuORF	REV__ENST00000490468.5_1_21:47744088-47766690:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.77386474609375	2	477.771991	953.529429	-0.25372	-0.00012122	4.4477	0.002125	4.194	0.0020038	477.77402803298537	69.208	1.0896	69.223	68.865	69.955	0.015129					60	27	4	0	0	0	0.50517	2	8237	8237;8276		87.696	4.4093	1	7029200	+		3342	33701	1970	1976	4399;4400	4399					0.05080589646047429
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2721252441406	2	464.272158	926.529764	0.56496	0.0002623	-1.1819	-0.00054871	-0.61691	-0.00028642	464.27169400340784	19.391	0.85992	19.391	19.168	20.028	0					50	17	5	0	0	0	0.45418	2	419	407;419		93.143	35.332	1	7141300			3343	5688	1971	1977	4401;4402	4402					0.06356009365879345
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2720642089844	2	464.272158	926.529764	-0.11763	-5.4612E-05	-0.53979	-0.00025061	-0.65742	-0.00030522	464.27202017286174	19.59	0.96406	19.471	19.2	20.164	-0.11872					57	19	5	0	0	0	0.66532	2	415	415;427		69.628	17.55	1	6839000			3344	5688	1971	1977	4403;4404	4403					0.06356009365879345
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.272158	926.529764	0.20492	9.514E-05	0.20361	9.4531E-05	0.40853	0.00018967	464.27203897129516	19.809	0.53942	19.649	19.331	19.871	-0.1608	0.09933	0.00094619	NaN	93.143	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132760			3345	5688	1971	1977							0.06356009365879345
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.272158	926.529764	0.99584	0.00046234	-0.85478	-0.00039685	0.14106	6.549E-05	464.27170452290835	19.828	0.58745	19.628	19.355	19.943	-0.2001	0.078708	-3.6575E-05	NaN	93.143	25	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205440			3346	5688	1971	1977							0.06356009365879345
APRGPGTVPA	10	Unmodified	_APRGPGTVPA_					0	0	0		ENST00000394426.5_1_12:53625883-53625982:-|nuORF;ENST00000550721.5_1_12:53625883-53626613:-|nuORF;ENST00000550362.5_2_12:53625883-53626360:-|nuORF	ENST00000394426.5_1_12:53625883-53625982:-|nuORF	ENST00000394426.5_1_12:53625883-53625982:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7588806152344	2	461.758884	921.503215	-0.94944	-0.00043841	0.37117	0.00017139	-0.57828	-0.00026702	461.7590663876545	30.859	1.7979	30.859	30.426	32.224	0					107	43	4	0	0	0	0.71272	3	1992	1992;2003;2039		66.429	15.094	1	18293000			3347	13488	1972	1978	4405;4406;4407	4405					0.03932320474552853
APRGPGTVPA	10	Unmodified	_APRGPGTVPA_					0	0	0		ENST00000394426.5_1_12:53625883-53625982:-|nuORF;ENST00000550721.5_1_12:53625883-53626613:-|nuORF;ENST00000550362.5_2_12:53625883-53626360:-|nuORF	ENST00000394426.5_1_12:53625883-53625982:-|nuORF	ENST00000394426.5_1_12:53625883-53625982:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.75872802734375	2	461.758884	921.503215	-0.31671	-0.00014624	-0.31944	-0.0001475	-0.63615	-0.00029375	461.758750729972	30.801	1.7244	30.812	30.458	32.182	0.011797					116	41	4	0	0	0	0.60198	2	2005	1993;2005		76.774	10.345	1	19668000			3348	13488	1972	1978	4408;4409	4409					0.03932320474552853
APRGPGTVPA	10	Unmodified	_APRGPGTVPA_					0	0	0		ENST00000394426.5_1_12:53625883-53625982:-|nuORF;ENST00000550721.5_1_12:53625883-53626613:-|nuORF;ENST00000550362.5_2_12:53625883-53626360:-|nuORF	ENST00000394426.5_1_12:53625883-53625982:-|nuORF	ENST00000394426.5_1_12:53625883-53625982:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.759033203125	2	461.758884	921.503215	-0.078002	-3.6018E-05	-0.63106	-0.0002914	-0.70906	-0.00032741	461.75862449237707	30.573	1.8856	30.647	30.17	32.056	0.074314					103	45	4	0	0	0	0.60198	3	1936	1912;1924;1936		76.774	12.872	1	19081000			3349	13488	1972	1978	4410;4411;4412	4412					0.03932320474552853
APRGTRLSP	9	Unmodified	_APRGTRLSP_					0	0	0		ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.777587890625	2	477.777608	953.540663	0.26524	0.00012673	-1.1472	-0.00054811	-0.88196	-0.00042138	477.77724843167783	27.381	2.813	27.381	26.447	29.26	0					206	70	5	0	0	0	0.48817	2	1523	1511;1523		60.118	3.6845	1	85113000			3350	16429	1973	1979	4413;4414	4414					0.0620341174017085
APRGTRLSP	9	Unmodified	_APRGTRLSP_					0	0	0		ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.77728271484375	2	477.777608	953.540663	-0.080074	-3.8258E-05	-0.84906	-0.00040566	-0.92914	-0.00044392	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.31037	2	1539	1489;1539		74.255	4.6274	1	79837000			3351	16429	1973	1979	4415;4416	4416					0.0620341174017085
APRHGLQSL	9	Unmodified	_APRHGLQSL_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7767028808594	2	489.777608	977.540663	-0.91901	-0.00045011	0.43196	0.00021156	-0.48705	-0.00023855	489.7777073103519	28.593	0.88083	28.593	28.151	29.032	0					35	20	2	0	0	0	0.28753	2	1675	1675;1685		77.318	16.346	1	2268100			3352	10346	1974	1980	4417;4418	4417					0.05099411740195592
APRHGLQSL	9	Unmodified	_APRHGLQSL_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.77685546875	2	489.777608	977.540663	-0.54365	-0.00026627	0.032534	1.5934E-05	-0.51112	-0.00025033	489.7775375552463	28.566	1.0445	28.562	28.078	29.122	-0.0042019					40	24	2	0	0	0	0.37611	2	1658	1658;1669		67.494	14.142	1	1985200			3353	10346	1974	1980	4419;4420	4419					0.05099411740195592
APRHGLQSL	9	Unmodified	_APRHGLQSL_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7768249511719	2	489.777608	977.540663	-0.45122	-0.000221	0.16708	8.1833E-05	-0.28414	-0.00013916	489.7775729634192	28.292	1.1432	28.373	27.95	29.093	0.080811					82	27	6	0	0	0	0.67687	1	1584	1584		47.657	13.485	1	2166900			3354	10346	1974	1980	4421	4421					0.05099411740195592
APRHGQQPL	9	Unmodified	_APRHGQQPL_					0	0	0		ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2870788574219	2	502.275232	1002.53591	-0.025739	-1.2928E-05	-2.5852	-0.0012985	-2.6109	-0.0013114	502.2738548945819	43.794	0.75685	43.825	43.413	44.17	0.030827					50	20	3	0	0	0	0.024294	1	4121	4121		55.504	13.108	1	982440			3355	16821	1975	1981	4422	4422					0.03474527597427368
APRHGQQPL	9	Unmodified	_APRHGQQPL_					0	0	0		ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.275232	1002.53591	-1.0293	-0.00051702	-3.0253	-0.0015195	-4.0546	-0.0020365	502.273932006671	44.307	0.80578	44.062	43.556	44.362	-0.2444	0.14602	-0.00097949	NaN	35.618	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779940			3356	16821	1975	1981							0.03474527597427368
APRHGQQPL	9	Unmodified	_APRHGQQPL_					0	0	0		ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	ENST00000561247.1_1_15:84946796-84950583:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.275232	1002.53591	-1.3056	-0.00065577	2.3561	0.0011834	1.0505	0.00052763	502.274113198637	44.34	1.1092	44.121	43.597	44.707	-0.21939	0.20447	0.0044263	NaN	35.618	44	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857930			3357	16821	1975	1981							0.03474527597427368
APRKAMMR	8	Unmodified	_APRKAMMR_					0	0	0			REV__ENST00000556023.1_1_14:65053965-65055014:+|nuORF	REV__ENST00000556023.1_1_14:65053965-65055014:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.25244140625	2	480.765132	959.51571	-0.36527	-0.00017561	1.6405	0.00078871	1.2753	0.0006131	480.7657187831857	35.546	0.30178	35.546	35.306	35.608	0					11	7	2	0	0	0	0.027866	1	2753	2753		25.45	3.7478	1	175650	+		3358	25932	1976	1982	4423	4423					0.03433317341603015
APRKGLPE	8	Unmodified	_APRKGLPE_					0	0	0			REV__nc|ENSG00000143384|Q07820-2|MCL1	REV__nc|ENSG00000143384|Q07820-2|MCL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.255859375	2	434.255977	866.497401	-0.25723	-0.00011171	-4.0543	-0.0017606	-4.3115	-0.0018723	434.2528064409524	104.03	0.48801	103.9	103.57	104.06	-0.12928					16	11	3	0	0	0	0.027866	1	12920	12920		24.203	0	1	53573	+		3359	24241	1977	1983	4424	4424					0.05881221962897598
APRKGNLQL	9	Unmodified	_APRKGNLQL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;ENST00000560634.1_1_15:84858634-84860056:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.8006591796875	2	498.801083	995.587613	-0.80877	-0.00040342	-0.29263	-0.00014597	-1.1014	-0.00054938	498.8008791584376	28.741	0.9637	28.741	28.406	29.37	0					56	23	4	0	0	0	0.67308	1	1687	1687		47.916	3.3845	1	2925300			3360	8381	1978	1984	4425	4425					0.0896427129133599
APRKGNLQL	9	Unmodified	_APRKGNLQL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;ENST00000560634.1_1_15:84858634-84860056:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.80047607421875	2	498.801083	995.587613	-0.56117	-0.00027991	-0.57298	-0.00028581	-1.1341	-0.00056572	498.8007358679737	28.693	1.0069	28.688	28.374	29.381	-0.0042019					60	24	4	0	0	0	0.40179	2	1681	1670;1681		65.803	16.362	1	2801300			3361	8381	1978	1984	4426;4427	4427					0.0896427129133599
APRKGNLQL	9	Unmodified	_APRKGNLQL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;ENST00000560634.1_1_15:84858634-84860056:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.8004455566406	2	498.801083	995.587613	0.016044	8.003E-06	-0.87456	-0.00043623	-0.85851	-0.00042823	498.8004728359334	28.445	0.89483	28.526	28.124	29.018	0.080811					71	21	6	0	0	0	0.18915	1	1619	1619		90.777	8.4716	1	3023500			3362	8381	1978	1984	4428	4428					0.0896427129133599
APRKPANTL	9	Unmodified	_APRKPANTL_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2872619628906	2	484.287808	966.561064	-0.41753	-0.00020221	-0.32816	-0.00015892	-0.74569	-0.00036113	484.28751944018154	23.102	0.77525	23.102	22.665	23.441	0					37	17	3	0	0	0	0.35646	3	878	867;878;891		68.787	8.8689	1	709260			3363	4706	1979	1985	4429;4430;4431	4430					0.07644582399984756
APRKPANTL	9	Unmodified	_APRKPANTL_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2873840332031	2	484.287808	966.561064	-0.48581	-0.00023527	-0.24591	-0.00011909	-0.73173	-0.00035437	484.2875378556251	23.068	0.83491	23.007	22.473	23.308	-0.060862					42	18	4	0	0	0	0.42604	2	874	856;874		64.207	14.766	1	759780			3364	4706	1979	1985	4432;4433	4433					0.07644582399984756
APRKPANTL	9	Unmodified	_APRKPANTL_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2879943847656	2	484.287808	966.561064	-0.94307	-0.00045672	0.21993	0.00010651	-0.72315	-0.00035021	484.2878129248229	22.973	0.86292	23.047	22.653	23.516	0.073954					39	19	3	0	0	0	0.27161	2	805	805;817		79.451	20.669	1	758660			3365	4706	1979	1985	4434;4435	4434					0.07644582399984756
APRKPANTL	9	Unmodified	_APRKPANTL_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.287808	966.561064	0.42796	0.00020725	-0.80862	-0.00039161	-0.38067	-0.00018435	484.2873209784164	22.924	0.60679	22.722	22.546	23.153	-0.20193	-0.2619	-0.00038365	NaN	79.451	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106250			3366	4706	1979	1985							0.07644582399984756
APRKPANTL	9	Unmodified	_APRKPANTL_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.287808	966.561064	1.349	0.0006533	-1.5486	-0.00074999	-0.19965	-9.6687E-05	484.28680656581565	23.235	1.1887	23.044	22.059	23.248	-0.19117	0.059269	-0.0011004	NaN	79.451	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149070			3367	4706	1979	1985							0.07644582399984756
APRKPPQAL	9	Unmodified	_APRKPPQAL_					0	0	0		RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant;nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant	RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.29815673828125	2	489.298176	976.581799	-0.29603	-0.00014485	-0.38732	-0.00018951	-0.68335	-0.00033436	489.29794737442813	27.126	2.4769	27.126	25.486	27.963	0					112	61	4	0	0	0	0.072054	3	1446	1434;1446;1459		120.62	41.17	1	6303000			3368	3401	1980	1986	4436;4437;4438	4437					0.09257172779643952
APRKPPQAL	9	Unmodified	_APRKPPQAL_					0	0	0		RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant;nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant	RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2979736328125	2	489.298176	976.581799	-0.45046	-0.00022041	-0.34414	-0.00016839	-0.7946	-0.0003888	489.29796081009437	27.066	1.5421	27.053	26.415	27.957	-0.012983					96	39	4	0	0	0	0.20967	3	1418	1418;1430;1444		87.754	37.73	1	6056900			3369	3401	1980	1986	4439;4440;4441	4439					0.09257172779643952
APRKPPQAL	9	Unmodified	_APRKPPQAL_					0	0	0		RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant;nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant	RTKN|p.P434A|1|0.07|ENSG00000114993|chr2:74427229-74427229|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2982482910156	2	489.298176	976.581799	-1.2425	-0.00060797	0.50177	0.00024552	-0.74076	-0.00036245	489.2983877068461	26.933	1.432	27.014	26.29	27.722	0.081291					87	36	4	0	0	0	0.13494	5	1385	1352;1361;1375;1385;1399		102.77	49.35	1	6819600			3370	3401	1980	1986	4442;4443;4444;4445;4446	4445					0.09257172779643952
APRKSAAAL	9	Unmodified	_APRKSAAAL_					0	0	0		ENST00000555849.5_3_12:57501969-57504177:-|nuORF;ENST00000454075.7_1_12:57501969-57504947:-|nuORF;ENST00000553499.5_3_12:57501969-57525861:-|nuORF;ENST00000553397.5_1_12:57501969-57504947:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.7697448730469	2	442.769252	883.52395	-0.83048	-0.00036771	1.0001	0.00044282	0.16964	7.511E-05	442.76958539219265	20.347	1.3151	20.347	19.782	21.097	0					56	26	3	0	0	0	0.039744	2	528	528;542		133.81	55.869	1	1044900			3371	14560	1981	1987	4447;4448	4447					0.0775291085420804
APRKSAAAL	9	Unmodified	_APRKSAAAL_					0	0	0		ENST00000555849.5_3_12:57501969-57504177:-|nuORF;ENST00000454075.7_1_12:57501969-57504947:-|nuORF;ENST00000553499.5_3_12:57501969-57525861:-|nuORF;ENST00000553397.5_1_12:57501969-57504947:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.7696228027344	2	442.769252	883.52395	-0.24724	-0.00010947	-0.53633	-0.00023747	-0.78357	-0.00034694	442.76933026553286	20.56	1.1624	20.455	19.981	21.143	-0.10477					66	23	7	0	0	0	0.19099	2	541	532;541		90.37	32.559	1	1169400			3372	14560	1981	1987	4449;4450	4450					0.0775291085420804
APRKSAAAL	9	Unmodified	_APRKSAAAL_					0	0	0		ENST00000555849.5_3_12:57501969-57504177:-|nuORF;ENST00000454075.7_1_12:57501969-57504947:-|nuORF;ENST00000553499.5_3_12:57501969-57525861:-|nuORF;ENST00000553397.5_1_12:57501969-57504947:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.76971435546875	2	442.769252	883.52395	1.3314	0.00058948	-0.87895	-0.00038917	0.4524	0.00020031	442.7686788733401	20.387	0.64055	20.456	20.217	20.858	0.068901					29	12	3	0	0	0	0.35646	1	487	487		68.787	22.815	1	353510			3373	14560	1981	1987	4451	4451					0.0775291085420804
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(170)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.2126159667969	3	415.211911	1242.6139	-0.0097029	-4.0288E-06	0.47977	0.00019921	0.47007	0.00019518	415.2121947012242	28.013	0.99734	28.013	27.616	28.613	0					92	24	6	0	0	0	0.00011755	6	1595	1563;1572;1583;1595;1607;1620		167.93	90.883	1	11729000			3374	18614	1982	1988	4452;4453;4454;4455;4456;4457	4455		590			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(120)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.2140808105469	3	415.211911	1242.6139	-0.45701	-0.00018976	1.7167	0.00071281	1.2597	0.00052305	415.21263045182684	29.147	2.6016	29.147	28.318	30.92	0					233	63	5	0	0	0	0.045178	12	1778	1683;1694;1704;1717;1727;1740;1753;1765;1778;1789;1801;1812		123.11	69.515	1	8091300			3375	18614	1982	1988	4458;4459;4460;4461;4462;4463;4464;4465;4466;4467;4468;4469	4466		590			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(180)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.21234130859375	3	415.211911	1242.6139	-0.10579	-4.3926E-05	0.33655	0.00013974	0.23075	9.5812E-05	415.2121880143034	27.948	0.98956	27.943	27.509	28.499	-0.0042					94	24	5	0	0	0	4.8196E-07	6	1587	1550;1562;1574;1587;1599;1612		178.54	108.14	1	12005000			3376	18614	1982	1988	4470;4471;4472;4473;4474;4475	4473		590			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(140)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2147521972656	3	415.211911	1242.6139	-0.18955	-7.8704E-05	1.6214	0.00067323	1.4319	0.00059452	415.21259612596083	29.162	3.1986	29.165	28.337	31.536	0.0031376					272	77	5	0	0	0	0.01065	11	1749	1678;1691;1702;1713;1724;1737;1749;1761;1774;1786;1796		139.15	66.178	1	8753000			3377	18614	1982	1988	4476;4477;4478;4479;4480;4481;4482;4483;4484;4485;4486	4482		590			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(130)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.21240234375	3	415.211911	1242.6139	-0.53828	-0.0002235	0.90226	0.00037463	0.36398	0.00015113	415.212388534227	27.692	0.8968	27.773	27.392	28.289	0.081291					83	22	5	0	0	0	0.014927	6	1482	1471;1482;1493;1505;1517;1530		133.75	66.832	1	11810000			3378	18614	1982	1988	4487;4488;4489;4490;4491;4492	4488		590			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(150)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.21466064453125	3	415.211911	1242.6139	-0.19047	-7.9083E-05	1.2102	0.00050248	1.0197	0.0004234	415.2124060772098	28.963	3.0121	29.043	28.124	31.136	0.080812					246	73	4	0	0	0	0.0019389	9	1673	1627;1638;1649;1661;1673;1685;1697;1709;1721		150.15	81.342	1	7479900			3379	18614	1982	1988	4493;4494;4495;4496;4497;4498;4499;4500;4501	4497		590			0.0023017240048375243
APRLNSADRPM	11	Unmodified	_APRLNSADRPM_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.88018798828125	3	409.880273	1226.61899	0.39617	0.00016238	-1.2318	-0.00050491	-0.83567	-0.00034252	409.8799570072153	33.373	1.6925	33.373	32.715	34.408	0					117	44	5	0	0	0	0.23615	6	2400	2377;2388;2400;2412;2426;2439		95.483	59.165	1	23551000			3380	18614	1982	1989	4502;4503;4504;4505;4506;4507	4504					0.014744762630925834
APRLNSADRPM	11	Unmodified	_APRLNSADRPM_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.8804016113281	3	409.880273	1226.61899	-0.21175	-8.6793E-05	-0.66449	-0.00027236	-0.87624	-0.00035915	409.88020577714036	33.201	1.6826	33.208	32.518	34.201	0.0066223					129	44	6	0	0	0	0.14191	6	2372	2338;2348;2360;2372;2384;2399		105.17	61.746	1	27095000			3381	18614	1982	1989	4508;4509;4510;4511;4512;4513	4511					0.014744762630925834
APRLNSADRPM	11	Unmodified	_APRLNSADRPM_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.8804931640625	3	409.880273	1226.61899	1.3931	0.00057099	-2.1839	-0.00089515	-0.79085	-0.00032416	409.8795315748876	33.103	1.4598	33.159	32.838	34.298	0.056572					123	37	5	0	0	0	0.23615	6	2341	2290;2302;2314;2326;2341;2354		95.483	44.692	1	20738000			3382	18614	1982	1989	4514;4515;4516;4517;4518;4519	4518					0.014744762630925834
APRLNSADRPM	11	Unmodified	_APRLNSADRPM_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	409.880273	1226.61899	-0.99959	-0.00040971	-7.7683	-0.0031841	-8.7679	-0.0035938	410.2103768043375	33.558	0.36172	33.392	33.117	33.479	-0.16565	0.10903	-0.0076726	NaN	105.17	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58627			3383	18614	1982	1989							0.014744762630925834
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.29541015625	2	469.295102	936.575651	0.34318	0.00016105	-0.74654	-0.00035035	-0.40336	-0.0001893	469.29474648517817	63.534	1.4587	63.283	62.893	64.352	-0.25141					106	39	4	0	0	0	0.10174	5	7436	7376;7386;7409;7421;7436		110.12	19.343	1	18985000			3384	7710	1983	1990	4520;4521;4522;4523;4524	4524					0.10482654548115988
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2954406738281	2	469.295102	936.575651	1.9219	0.00090193	-2.3969	-0.0011249	-0.47503	-0.00022293	469.29396151067465	63.28	1.6067	63.335	62.888	64.495	0.054104					109	43	4	0	0	0	0.1158	5	7286	7286;7295;7319;7331;7345		107.01	24.702	1	16387000			3385	7710	1983	1990	4525;4526;4527;4528;4529	4525					0.10482654548115988
APRLQLLF	8	Unmodified	_APRLQLLF_					0	0	0			REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2977600097656	2	479.297645	956.580737	-0.20541	-9.8454E-05	0.54261	0.00026007	0.3372	0.00016162	479.29772652342143	70.058	1.3879	70.07	69.627	71.015	0.012413					72	35	3	0	0	0	0.97924	1	8401	8401		40.573	3.4135	1	4766400	+		3386	34203	1984	1991	4530	4530					0.10070958410756248
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.83251953125	2	606.832777	1211.651	-1.6075	-0.00097546	1.1425	0.00069329	-0.46499	-0.00028217	606.8334984516033	54.608	1.2151	54.608	54.249	55.464	0					109	34	5	0	0	0	0.24661	3	5961	5961;5972;5985		94.409	28.652	1	26024000			3387	9103	1985	1992	4531;4532;4533	4531					0.05364167217908289
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.8325805664062	2	606.832777	1211.651	-0.39001	-0.00023667	0.11443	6.944E-05	-0.27558	-0.00016723	606.8328708038374	54.676	1.0704	54.526	54.229	55.299	-0.15036					101	30	5	0	0	0	0.073648	5	5972	5949;5960;5972;5984;5996		114.86	44.042	1	24037000			3388	9103	1985	1992	4534;4535;4536;4537;4538	4536					0.05364167217908289
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	606.8330688476562	2	606.832777	1211.651	-0.45613	-0.0002768	0.064841	3.9347E-05	-0.39129	-0.00023745	606.8328426119041	54.345	1.1807	54.443	54.114	55.294	0.098015					102	33	5	0	0	0	0.33796	5	5848	5848;5861;5873;5886;5898		86.882	20.452	1	31905000			3389	9103	1985	1992	4539;4540;4541;4542;4543	4539					0.05364167217908289
APRLSRSAE	9	Unmodified	_APRLSRSAE_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2;nc|ENSG00000169402|B2RC85-2|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.77252197265625	2	493.772522	985.530492	-0.78917	-0.00038967	0.50422	0.00024897	-0.28495	-0.0001407	493.77269736627943	20.777	0.72832	20.777	20.516	21.244	0					23	14	2	0	0	0	0.72494	1	588	588		44.377	3.599	1	493290			3390	6446	1986	1993	4544	4544					0.03714804014941819
APRMRPPL	8	Unmodified	_APRMRPPL_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|122|3|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|122|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2950439453125	2	469.273647	936.532741	0.15355	7.2058E-05	0.65787	0.00030872	0.81142	0.00038078	469.27394478570216	63.319	0.13991	63.319	63.196	63.336	0					5	3	2	0	0	0	0.027866	1	7404	7404		31.955	0	1	185910	+		3391	36118	1987	1994	4545	4545					0.061935612190495704
APRNPTLTM	9	Oxidation (M)	_APRNPTLTM(Oxidation (M))_		APRNPTLTM(1)		APRNPTLTM(91)	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7649841308594	2	508.763309	1015.51206	-0.66425	-0.00033795	0.42011	0.00021374	-0.24413	-0.00012421	508.76345437767446	31.693	0.87535	31.693	31.386	32.262	0					44	21	3	0	0	0	0.18994	1	2145	2145		90.601	24.798	1	1374400			3392	4546	1988	1995	4546	4546		180			0.00492926048730169
APRNPTLTM	9	Oxidation (M)	_APRNPTLTM(Oxidation (M))_		APRNPTLTM(1)		APRNPTLTM(93)	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7656555175781	2	508.763309	1015.51206	-0.38478	-0.00019576	0.17942	9.1283E-05	-0.20536	-0.00010448	508.7633326134379	31.622	0.88025	31.634	31.34	32.221	0.011799					46	21	3	0	0	0	0.17822	1	2117	2117		93.195	16.349	1	1494000			3393	4546	1988	1995	4547	4547		180			0.00492926048730169
APRNPTLTM	9	Oxidation (M)	_APRNPTLTM(Oxidation (M))_		APRNPTLTM(1)		APRNPTLTM(130)	0	0	1		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.76409912109375	2	508.763309	1015.51206	-0.39901	-0.000203	0.11094	5.644E-05	-0.28807	-0.00014656	508.7632734005895	31.355	0.96962	31.424	31.04	32.009	0.068962					54	23	4	0	0	0	0.03849	1	2040	2040		134.81	28.396	1	1509200			3394	4546	1988	1995	4548	4548		180			0.00492926048730169
APRNRGSGF	9	Unmodified	_APRNRGSGF_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.25146484375	2	481.251757	960.488962	0.84071	0.00040459	-0.74957	-0.00036073	0.091146	4.3864E-05	481.2512836862492	19.522	0.76073	19.522	19.268	20.028	0					39	15	4	0	0	0	0.67308	1	427	427		47.916	3.7988	1	573970			3395	10138	1989	1996	4549	4549					0.007136680462849654
APRNRGSGF	9	Unmodified	_APRNRGSGF_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	481.251757	960.488962	-0.09651	-4.6445E-05	0.1792	8.6239E-05	0.082688	3.9794E-05	481.2517063374226	19.7	0.61895	19.581	19.397	20.016	-0.11872	0.02943	0.00056447	NaN	47.916	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136150			3396	10138	1989	1996							0.007136680462849654
APRNSPTGL	9	Unmodified	_APRNSPTGL_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.748779296875	2	456.748516	911.482479	-0.79603	-0.00036359	1.3498	0.00061654	0.55381	0.00025295	456.74885711527463	30.127	0.85988	30.127	29.732	30.592	0					36	20	2	0	0	0	0.16638	2	1904	1904;1916		95.815	21.84	1	1634100			3397	4100	1990	1997	4550;4551	4550					0.023197300948936572
APRNSPTGL	9	Unmodified	_APRNSPTGL_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7487487792969	2	456.748516	911.482479	-0.42047	-0.00019205	1.0808	0.00049368	0.66038	0.00030163	456.7487122249322	30.094	0.94653	30.102	29.677	30.624	0.0086708					40	22	2	0	0	0	0.14181	2	1899	1887;1899		101.25	29.375	1	1851400			3398	4100	1990	1997	4552;4553	4553					0.023197300948936572
APRNSPTGL	9	Unmodified	_APRNSPTGL_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7489318847656	2	456.748516	911.482479	-0.72277	-0.00033012	0.99128	0.00045277	0.26851	0.00012264	456.7487908264178	29.743	1.3458	29.821	29.45	30.796	0.078344					56	32	2	0	0	0	0.15366	2	1812	1802;1812		98.629	40.399	1	1721100			3399	4100	1990	1997	4554;4555	4555					0.023197300948936572
APRPAGSYL	9	Unmodified	_APRPAGSYL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.2541198730469	2	466.253434	930.492316	0.13664	6.3708E-05	0.014687	6.8477E-06	0.15133	7.0556E-05	466.25328850181126	39.78	0.92139	39.78	39.254	40.176	0					60	25	4	0	0	0	0.12602	3	3453	3442;3453;3465		104.75	38.317	1	3656300			3400	8905	1991	1998	4556;4557;4558	4557					0.024289181002814075
APRPAGSYL	9	Unmodified	_APRPAGSYL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.2543640136719	2	466.253434	930.492316	-0.8452	-0.00039408	0.96954	0.00045205	0.12433	5.7971E-05	466.2537357131868	39.808	1.0221	39.696	39.221	40.243	-0.11223					65	27	4	0	0	0	0.091713	3	3440	3431;3440;3453		113.41	40.686	1	3092100			3401	8905	1991	1998	4559;4560;4561	4560					0.024289181002814075
APRPAGSYL	9	Unmodified	_APRPAGSYL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.2539978027344	2	466.253434	930.492316	-0.060921	-2.8404E-05	0.33694	0.0001571	0.27602	0.0001287	466.25340184097513	39.955	1.2428	39.978	39.42	40.663	0.023006					69	34	4	0	0	0	0.072054	3	3415	3415;3426;3439		120.62	35.705	1	3153900			3402	8905	1991	1998	4562;4563;4564	4562					0.024289181002814075
APRPASGPIRP	11	Unmodified	_APRPASGPIRP_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000563749.1_1_16:89627605-89627911:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8250732421875	2	559.825089	1117.63563	-0.76011	-0.00042553	0.071906	4.0255E-05	-0.68821	-0.00038527	559.8250988084533	30.491	1.1251	30.566	29.962	31.087	0.074314					82	26	5	0	0	0	0.4516	1	1896	1896		79.489	7.6116	1	3310800			3403	7696	1992	1999	4565	4565					0.08151345211376793
APRPDRLVNRL	11	Unmodified	_APRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.2616271972656	3	436.261594	1305.76295	0.34939	0.00015242	-0.085241	-3.7187E-05	0.26415	0.00011524	436.26168022063865	39.37	1.2688	39.37	38.868	40.137	0					113	35	5	0	0	0	1.0123	1	3369	3369		34.087	0	1	6575400			3404	855	1993	2000	4566	4566					0.12230066085544422
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;TSEN34|p.R220Lfs*25|1|0.35|ENSG00000170892|chr19:54192284-54192285|-/GCTA|frameshift_variant;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.89019775390625	3	424.890048	1271.64832	-1.008	-0.00042829	0.92009	0.00039094	-0.087916	-3.7355E-05	424.89056395204	20.154	2.3712	20.154	19.735	22.106	0					136	48	5	0	0	0	0.84303	4	529	482;491;503;529		55.084	20.997	1	3799800			3405	8089	1994	2001	4567;4568;4569;4570	4570					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;TSEN34|p.R220Lfs*25|1|0.35|ENSG00000170892|chr19:54192284-54192285|-/GCTA|frameshift_variant;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.89013671875	3	424.890048	1271.64832	-0.5317	-0.00022591	0.44672	0.00018981	-0.084978	-3.6106E-05	424.89036779207765	20.463	2.26	20.358	19.981	22.241	-0.10477					140	46	6	0	0	0	0.89117	3	512	512;523;536		52.167	11.087	1	3744000			3406	8089	1994	2001	4571;4572;4573	4571					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;TSEN34|p.R220Lfs*25|1|0.35|ENSG00000170892|chr19:54192284-54192285|-/GCTA|frameshift_variant;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.8902282714844	3	424.890048	1271.64832	1.5067	0.0006402	-1.5945	-0.00067748	-0.087749	-3.7284E-05	424.8895039089047	20.322	2.5821	20.391	19.972	22.554	0.068901					147	52	6	0	0	0	0.61955	4	472	462;472;484;496		68.626	17.098	1	3393500			3407	8089	1994	2001	4574;4575;4576;4577	4575					0.023357566036111166
APRPENSH	8	Unmodified	_APRPENSH_					0	0	0			REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7817687988281	2	454.222665	906.430778	-0.12949	-5.8819E-05	-1.2531	-0.00056918	-1.3826	-0.000628	454.2220450550027	44.943	0.45603	44.943	44.691	45.147	0					17	12	2	0	0	0	0.027866	1	4288	4288		30.504	3.7075	1	100880	+		3408	31282	1995	2002	4578	4578					-0.026180135990102826
APRPFPEVSL	10	Unmodified	_APRPFPEVSL_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF	ENSG00000161996|ENST00000293879|WDR90;nc|ENSG00000161996|Q96KV7-3|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.807861328125	2	556.808574	1111.60259	-1.6486	-0.00091796	0.94715	0.00052738	-0.70145	-0.00039058	556.809082839671	65.034	0.67812	64.771	64.494	65.172	-0.2626					52	17	4	0	0	0	1.0344	1	7647	7647		41.427	0.64845	1	3648600			3409	6908;13966	1996	2003	4579	4579					0.051257183686630015
APRPFPEVSL	10	Unmodified	_APRPFPEVSL_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF	ENSG00000161996|ENST00000293879|WDR90;nc|ENSG00000161996|Q96KV7-3|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.8084106445312	2	556.808574	1111.60259	-0.36173	-0.00020141	-0.065173	-3.6289E-05	-0.4269	-0.0002377	556.8085740186641	64.713	0.80472	64.759	64.525	65.329	0.045502					55	21	4	0	0	0	0.61732	2	7551	7551;7569		75.043	11.509	1	3556700			3410	6908;13966	1996	2003	4580;4581	4580					0.051257183686630015
APRPGPRAV	9	Unmodified	_APRPGPRAV_					0	0	0		nc|ENSG00000159873|Q8IWD4-4|CCDC117;nc|ENSG00000159873|Q8IWD4-3|CCDC117;ENSG00000159873|ENST00000249064|CCDC117	nc|ENSG00000159873|Q8IWD4-4|CCDC117	nc|ENSG00000159873|Q8IWD4-4|CCDC117	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.77392578125	2	460.774868	919.535184	-0.83383	-0.00038421	0.68826	0.00031713	-0.14558	-6.7079E-05	460.77507103377	24.069	0.78853	24.022	23.699	24.487	-0.047146					48	17	4	0	0	0	0.80658	1	1018	1018		38.806	0	1	1690600			3411	6772	1997	2004	4582	4582					0.07219732948362889
APRPGQKRENI	11	Unmodified	_APRPGQKRENI_					0	0	0		ENST00000442937.5_1_3:177159829-177347330:+|nuORF	ENST00000442937.5_1_3:177159829-177347330:+|nuORF	ENST00000442937.5_1_3:177159829-177347330:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8466491699219	3	422.573949	1264.70002	-0.091074	-3.8485E-05	3.2384	0.0013685	3.1473	0.00133	422.57524831861247	33.309	0.86143	33.109	32.813	33.675	-0.20019					57	21	4	0	0	0	0.024742	1	2349	2349		15.337	0	1	2318200			3412	14389	1998	2005	4583	4583					0.0782550029750837
APRPGVLL	8	Unmodified	_APRPGVLL_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;nc|ENSG00000049540|P15502-11|ELN;ENST00000480728.5_1_7:73442517-73457477:+|nuORF;ENST00000468517.5_1_7:73442517-73457477:+|nuORF	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	411.7633361816406	2	411.763438	821.512323	0.37197	0.00015316	0.15856	6.5289E-05	0.53053	0.00021845	411.7632558568675	48.402	1.466	48.402	47.971	49.437	0					84	41	4	0	0	0	0.91239	1	4937	4937		50.025	3.2581	1	3146600			3413	1128	1999	2006	4584	4584					0.0944271383089017
APRPLPTSI	9	Unmodified	_APRPLPTSI_					0	0	0		ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-3	3	476.2847595214844	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.04	1	102.03	101.53	102.53	-0.0054474								0	0	0	0.63578	1	12992	12992		34.173	3.6689	1				3414	111	2000	2007	4585	4585					0.07766064168458797
APRPPAHRCD	10	Unmodified	_APRPPAHRCD_					0	0	0			REV__AluSx_dup108495|chr19:47742279-47742570:-|1.1370174590336468|0.3451542978898808|1.72|520.0|13|1|anti-sense	REV__AluSx_dup108495|chr19:47742279-47742570:-|1.1370174590336468|0.3451542978898808|1.72|520.0|13|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.824951171875	2	560.277449	1118.54035	-0.59573	-0.00033377	-1.092	-0.00061184	-1.6878	-0.00094561	560.2764839118	30.655	0.54328	30.729	30.544	31.087	0.074314					19	12	2	0	0	0	0.03519	1	1921	1921		47.657	3.5405	1	112750	+		3415	19123	2001	2008	4586	4586					-0.014183312513296187
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(68)	0	0	1		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11	ENSG00000197728|ENST00000646449|RPS26	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.778564453125	2	503.778762	1005.54297	-0.46554	-0.00023453	0.10432	5.2553E-05	-0.36122	-0.00018198	503.7786416227463	23.056	2.3766	23.056	21.146	23.523	0					94	51	3	0	0	0	0.36105	1	870	870		68.485	15.133	1	711780			3416	10041	2002	2009	4587	4587		419			0.040421241536364505
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(48)	0	0	1		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11	ENSG00000197728|ENST00000646449|RPS26	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7802734375	2	503.778762	1005.54297	-0.51145	-0.00025766	0.09036	4.5522E-05	-0.42108	-0.00021213	503.77865186540316	23.039	2.1803	22.978	21.334	23.514	-0.06086					89	47	3	0	0	0	0.67308	1	827	827		47.916	13.743	1	789290			3417	10041	2002	2009	4588	4588		419			0.040421241536364505
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(48)	0	0	1		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11	ENSG00000197728|ENST00000646449|RPS26	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.779296875	2	503.778762	1005.54297	-1.0672	-0.00053765	0.20742	0.0001045	-0.85982	-0.00043316	503.778936625084	24.155	2.0576	24.108	23.321	25.379	-0.047148					139	47	5	0	0	0	0.67308	1	989	989		47.916	12.715	1	642010			3418	10041	2002	2009	4589	4589		419			0.040421241536364505
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(50)	0	0	1		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11	ENSG00000197728|ENST00000646449|RPS26	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7791442871094	2	503.778762	1005.54297	-0.671	-0.00033804	0.41536	0.00020925	-0.25564	-0.00012879	503.77873585412516	22.976	2.3026	23.05	21.256	23.559	0.073954					99	49	4	0	0	0	0.64155	2	788	788;809		50.025	12.297	1	711070			3419	10041	2002	2009	4590;4591	4590		419			0.040421241536364505
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(50)	0	0	1		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11	ENSG00000197728|ENST00000646449|RPS26	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7799377441406	2	503.778762	1005.54297	0.064875	3.2683E-05	-0.7603	-0.00038302	-0.69542	-0.00035034	503.77840521492055	24.025	2.611	24.103	23.352	25.963	0.077791					161	59	5	0	0	0	0.64155	1	959	959		50.025	7.5501	1	908260			3420	10041	2002	2009	4592	4592		419			0.040421241536364505
APRPPPKPM	9	Unmodified	_APRPPPKPM_					0	0	0		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11	ENSG00000197728|ENST00000646449|RPS26	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.7811279296875	2	495.781305	989.548056	-0.45071	-0.00022345	0.19099	9.4691E-05	-0.25972	-0.00012876	495.7812528729516	28.218	1.7504	28.218	27.323	29.073	0					109	43	4	0	0	0	0.67308	1	1646	1646		47.916	0.25827	1	1342200			3421	10041	2002	2010	4593	4593					0.052864280162452815
APRPPPKPM	9	Unmodified	_APRPPPKPM_					0	0	0		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11	ENSG00000197728|ENST00000646449|RPS26	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.7810363769531	2	495.781305	989.548056	-0.47132	-0.00023367	0.2369	0.00011745	-0.23442	-0.00011622	495.7812582611919	28.187	1.8723	28.183	27.25	29.122	-0.0042019					110	46	4	0	0	0	0.33245	1	1622	1622		71.296	12.514	1	1838500			3422	10041	2002	2010	4594	4594					0.052864280162452815
APRPPSSSP	9	Unmodified	_APRPPSSSP_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;ENST00000526593.1_1_11:68377055-68380582:+|nuORF	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.23516845703125	2	448.235242	894.45593	-0.014015	-6.2818E-06	-0.29544	-0.00013243	-0.30946	-0.00013871	448.23511053503233	26.649	2.2999	26.649	25.135	27.435	0					163	56	4	0	0	0	0.043667	4	1405	1355;1367;1391;1405		131.03	8.8554	1	7601100			3423	3020	2003	2011	4595;4596;4597;4598	4598					0.004480412035718473
APRPPSSSP	9	Unmodified	_APRPPSSSP_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;ENST00000526593.1_1_11:68377055-68380582:+|nuORF	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2352600097656	2	448.235242	894.45593	-0.24633	-0.00011041	-0.054041	-2.4223E-05	-0.30037	-0.00013463	448.23521005210773	26.645	2.1698	26.622	25.172	27.342	-0.023088					147	53	5	0	0	0	0.03201	3	1336	1336;1345;1369		139.97	14.128	1	8247300			3424	3020	2003	2011	4599;4600;4601	4599					0.004480412035718473
APRPPSSSP	9	Unmodified	_APRPPSSSP_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;ENST00000526593.1_1_11:68377055-68380582:+|nuORF	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2351379394531	2	448.235242	894.45593	-0.14058	-6.3012E-05	-0.096153	-4.3099E-05	-0.23673	-0.00010611	448.2351985977982	26.303	2.1637	26.384	25.008	27.171	0.081293					144	52	4	0	0	0	0.021872	2	1288	1276;1288		148.04	8.665	1	7178700			3425	3020	2003	2011	4602;4603	4603					0.004480412035718473
APRPPTAAP	9	Unmodified	_APRPPTAAP_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;nc|ENSG00000184939|Q8TF47-3|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.24798583984375	2	439.248152	876.481751	-0.367	-0.00016121	0.13569	5.9602E-05	-0.23131	-0.0001016	439.24816198999156	33.403	2.0226	33.403	32.186	34.209	0					158	53	5	0	0	0	0.31037	4	2401	2365;2376;2401;2414		74.255	8.8199	1	10783000			3426	9385	2004	2012	4604;4605;4606;4607	4606					0.03856935445844556
APRPPTAAP	9	Unmodified	_APRPPTAAP_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;nc|ENSG00000184939|Q8TF47-3|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2481384277344	2	439.248152	876.481751	-0.48273	-0.00021204	0.22934	0.00010074	-0.25339	-0.0001113	439.2482080932581	33.297	2.3249	33.304	32.139	34.463	0.0066223					174	61	5	0	0	0	0.2508	4	2377	2365;2377;2391;2403		82.241	13.454	1	11536000			3427	9385	2004	2012	4608;4609;4610;4611	4609					0.03856935445844556
APRPPTAAP	9	Unmodified	_APRPPTAAP_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;nc|ENSG00000184939|Q8TF47-3|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.248291015625	2	439.248152	876.481751	0.71219	0.00031283	-0.91331	-0.00040117	-0.20113	-8.8344E-05	439.24770877008893	33.204	2.5273	33.26	31.997	34.524	0.056568					165	65	4	0	0	0	0.15029	3	2315	2315;2327;2340		99.375	36.069	1	10061000			3428	9385	2004	2012	4612;4613;4614	4612					0.03856935445844556
APRPWPSL	8	Unmodified	_APRPWPSL_					0	0	0		ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.75909423828125	2	462.25852	922.502486	0.30729	0.00014205	2.9771	0.0013762	3.2844	0.0015182	462.2598488076006	36.743	0.86415	36.743	36.063	36.927	0					33	23	2	0	0	0	0.027866	1	2951	2951		35.201	1.6851	1	3335000			3429	10679	2005	2013	4615	4615					0.03813525825501074
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(82)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.75225830078125	2	478.752744	955.490935	0.065349	3.1286E-05	-0.63707	-0.000305	-0.57173	-0.00027372	478.752473881619	33.469	0.98684	33.469	32.79	33.777	0					89	26	4	0	0	0	0.25032	3	2436	2424;2436;2447		82.305	12.677	1	14467000			3430	2765	2006	2014	4616;4617;4618	4617		105			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(79)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7524719238281	2	478.752744	955.490935	-0.23744	-0.00011368	-0.42652	-0.0002042	-0.66396	-0.00031787	478.75261987044075	32.433	0.59963	32.445	32.144	32.743	0.011795					53	15	4	0	0	0	0.27161	1	2257	2257		79.451	7.5735	1	19767000			3431	2765	2006	2014	4619	4619		105			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(71)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7524719238281	2	478.752744	955.490935	-0.35702	-0.00017092	-0.29028	-0.00013897	-0.6473	-0.0003099	478.75263780541945	33.354	0.94904	33.361	32.738	33.687	0.0066223					82	25	4	0	0	0	0.33245	1	2402	2402		71.296	9.1883	1	13074000			3432	2765	2006	2014	4620	4620		105			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(71)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	478.75250244140625	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.152	1	33.209	32.709	33.709	0.056572								0	0	0	0.25637	1	2316	2316		71.296	10.324	1				3433	2765	2006	2014	4621	4621		105			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(79)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	478.7524719238281	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.285	1	33.341	32.841	33.841	0.056572								0	0	0	0.15858	1	2338	2338		79.451	16.145	1				3434	2765	2006	2014	4622	4622		105			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(79)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	478.75244140625	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.361	1	33.417	32.917	33.917	0.056572								0	0	0	0.15858	1	2351	2351		79.451	7.5735	1				3435	2765	2006	2014	4623	4623		105			0.011409607398832122
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.7552795410156	2	470.755287	939.496021	0.32786	0.00015434	-0.68139	-0.00032077	-0.35353	-0.00016642	470.7549706964286	37.47	1.0412	37.47	37.158	38.199	0					88	29	5	0	0	0	0.29104	4	3044	3044;3054;3065;3077		76.847	23.495	1	12806000			3436	2765	2006	2015	4624;4625;4626;4627	4624					0.023852646024920432
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.75537109375	2	470.755287	939.496021	0.05205	2.4503E-05	-0.50857	-0.00023941	-0.45652	-0.00021491	470.7550417505417	37.389	1.0219	37.326	37.014	38.036	-0.063385					83	28	5	0	0	0	0.20304	5	3010	3010;3019;3031;3044;3058		88.643	27.548	1	14798000			3437	2765	2006	2015	4628;4629;4630;4631;4632	4628					0.023852646024920432
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.7549743652344	2	470.755287	939.496021	0.35332	0.00016633	-0.72877	-0.00034307	-0.37546	-0.00017675	470.7549325945575	37.512	1.1867	37.544	37.149	38.336	0.032269					79	32	4	0	0	0	0.14199	5	3010	2989;3000;3010;3022;3037		101.21	29.916	1	12304000			3438	2765	2006	2015	4633;4634;4635;4636;4637	4635					0.023852646024920432
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	470.755287	939.496021	0.37838	0.00017813	-6.9761	-0.0032841	-6.5978	-0.0031059	470.7517962909583	37.305	0.37767	37.112	36.851	37.229	-0.193	-0.19794	-0.0056348	NaN	101.21	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141950			3439	2765	2006	2015							0.023852646024920432
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.755287	939.496021	-0.25802	-0.00012146	-7.1114	-0.0033477	-7.3694	-0.0034692	470.7518485649463	37.306	0.4668	37.097	36.806	37.273	-0.2092	-0.21273	-0.0057621	NaN	101.21	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250610			3440	2765	2006	2015							0.023852646024920432
APRRALGGGA	10	Unmodified	_APRRALGGGA_					0	0	0		ENST00000459860.1_1_9:140083151-140083427:+|nuORF	ENST00000459860.1_1_9:140083151-140083427:+|nuORF	ENST00000459860.1_1_9:140083151-140083427:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.260009765625	2	463.26995	924.525347	-0.24159	-0.00011192	0.29065	0.00013465	0.049053	2.2725E-05	463.26995560378026	20.022	0.71842	19.917	19.509	20.227	-0.10477					24	14	2	0	0	0	0.03519	1	485	485		38.806	6.8513	1	190420			3441	14641	2007	2016	4638	4638					0.06006544942988512
APRRFAKPCLP	11	Carbamidomethyl (C)	_APRRFAKPC(Carbamidomethyl (C))LP_	APRRFAKPC(1)LP		APRRFAKPC(40)LP		0	1	0			REV__ENSG00000218891|ENST00000325421|ZNF579	REV__ENSG00000218891|ENST00000325421|ZNF579	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.2447509765625	3	438.248408	1311.72339	-0.059295	-2.5986E-05	-2.7674	-0.0012128	-2.8267	-0.0012388	438.2471453675113	28.131	2.6816	28.212	27.245	29.926	0.080811					178	67	3	0	0	0	0.98542	1	1537	1537		40.058	8.024	1	1719600	+		3442	28825	2008	2017	4639	4639	375				0.080002228104604
APRRGPALL	9	Unmodified	_APRRGPALL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7980651855469	2	475.798343	949.582134	-0.2549	-0.00012128	-0.40234	-0.00019143	-0.65724	-0.00031271	475.7980130846386	33.198	0.76089	33.205	32.888	33.649	0.0066261					52	20	3	0	0	0	0.14199	1	2357	2357		101.21	29.834	1	2255400			3443	18734;10657	2009	2018	4640	4640					0.10532592499521343
APRRGPALL	9	Unmodified	_APRRGPALL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.798343	949.582134	0.35492	0.00016887	-0.80971	-0.00038526	-0.45479	-0.00021639	475.79778670397684	33.319	0.91233	33.319	32.865	33.777	0	0.079245	2.0598E-05	NaN	101.21	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1964400			3444	18734;10657	2009	2018							0.10532592499521343
APRRGPALL	9	Unmodified	_APRRGPALL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.798343	949.582134	0.7407	0.00035242	-1.3567	-0.00064553	-0.61603	-0.0002931	475.7975247036701	33.138	0.89346	33.195	32.8	33.693	0.056572	-0.044652	-0.00049994	NaN	101.21	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1711800			3445	18734;10657	2009	2018							0.10532592499521343
APRRPGVP	8	Unmodified	_APRRPGVP_					0	0	0		ENST00000587090.5_1_19:38755282-38774395:+|nuORF;ENST00000301244.11_1_19:38755282-38755522:+|nuORF	ENST00000587090.5_1_19:38755282-38774395:+|nuORF	ENST00000587090.5_1_19:38755282-38774395:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.2563171386719	2	425.256311	848.49807	-1.1219	-0.00047712	1.5455	0.00065725	0.42359	0.00018014	425.25686696116054	35.417	0.73457	35.395	35.049	35.783	-0.021763					33	18	2	0	0	0	0.98906	2	2703	2703;2715		39.021	3.8208	1	2048600			3446	11924	2010	2019	4641;4642	4641					0.06776061402615596
APRRPGVP	8	Unmodified	_APRRPGVP_					0	0	0		ENST00000587090.5_1_19:38755282-38774395:+|nuORF;ENST00000301244.11_1_19:38755282-38755522:+|nuORF	ENST00000587090.5_1_19:38755282-38774395:+|nuORF	ENST00000587090.5_1_19:38755282-38774395:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.2563781738281	2	425.256311	848.49807	-0.16348	-6.9519E-05	0.38064	0.00016187	0.21716	9.2349E-05	425.2563848537095	35.471	0.94861	35.515	35.156	36.105	0.04406					41	24	2	0	0	0	1.0472	1	2672	2672		29.842	1.5873	1	2645600			3447	11924	2010	2019	4643	4643					0.06776061402615596
APRSIHKS	8	Unmodified	_APRSIHKS_					0	0	0		ENST00000529357.5_1_17:43475293-43487738:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;ARHGAP27|p.K499Rfs*34|1|0.1|ENSG00000159314|chr17:45404080-45404080|T/-|frameshift_variant	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.25775146484375	2	448.259051	894.503549	0.72777	0.00032623	-0.73156	-0.00032793	-0.003781	-1.6949E-06	448.25875915676653	86.345	1.2334	86.345	85.708	86.941	0					49	28	4	0	0	0	1.0198	1	10842	10842		34.173	7.3764	1	498620			3448	16207	2011	2020	4644	4644					0.05207740194418875
APRSIHKS	8	Unmodified	_APRSIHKS_					0	0	0		ENST00000529357.5_1_17:43475293-43487738:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;ARHGAP27|p.K499Rfs*34|1|0.1|ENSG00000159314|chr17:45404080-45404080|T/-|frameshift_variant	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.25775146484375	2	448.259051	894.503549	0.20344	9.1196E-05	-0.26622	-0.00011933	-0.062773	-2.8139E-05	448.25894092668227	86.515	1.293	86.378	85.702	86.995	-0.13734					53	29	3	0	0	0	1.0198	1	10486	10486		34.173	5.023	1	560680			3449	16207	2011	2020	4645	4645					0.05207740194418875
APRSPLIN	8	Unmodified	_APRSPLIN_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2554931640625	2	434.255977	866.497401	0.55888	0.0002427	-3.7908	-0.0016462	-3.2319	-0.0014035	434.2546865361546	102.85	0.76579	102.85	102.5	103.27	-0.0046082					56	18	4	0	0	0	0.027866	1	13144	13144		21.96	0	1	39551000	+		3450	36533	2012	2021	4646	4646					0.05881221962897598
APRTAAPPP	9	Unmodified	_APRTAAPPP_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;ENST00000482899.1_1_7:150737654-150742433:+|nuORF	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2481994628906	2	439.248152	876.481751	0.71219	0.00031283	-0.91331	-0.00040117	-0.20113	-8.8344E-05	439.24770877008893	33.204	2.5273	33.26	31.997	34.524	0.056568					165	65	4	0	0	0	0.52323	2	2292	2280;2292		57.811	8.3697	1	10061000			3451	9964	2013	2022	4647;4648	4648					0.03856935445844556
APRTAPNPP	9	Unmodified	_APRTAPNPP_					0	0	0			REV__nc|ENSG00000182257|Q9NV39|PRR34	REV__nc|ENSG00000182257|Q9NV39|PRR34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.77435302734375	2	460.751059	919.487565	-0.32663	-0.0001505	0.7204	0.00033192	0.39377	0.00018143	460.7513141992388	24.081	0.9587	24.081	23.694	24.653	0					31	21	2	0	0	0	0.024323	1	1015	1015		35.618	15.622	1	169760	+		3452	36992	2014	2023	4649	4649					0.024600339575158614
APRTAPNPP	9	Unmodified	_APRTAPNPP_					0	0	0			REV__nc|ENSG00000182257|Q9NV39|PRR34	REV__nc|ENSG00000182257|Q9NV39|PRR34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7740783691406	2	460.751059	919.487565	-0.85374	-0.00039336	1.4609	0.00067312	0.60717	0.00027975	460.75164905756577	24.114	1.0958	24.066	23.528	24.623	-0.047148					36	24	2	0	0	0	0.024374	1	993	993		40.778	3.6191	1	181710	+		3453	36992	2014	2023	4650	4650					0.024600339575158614
APRTVSVQTL	10	Unmodified	_APRTVSVQTL_					0	0	0		RBBP8-TAF4B|1|fusion;ENSG00000141384|ENST00000269142|TAF4B;nc|ENSG00000141384|Q92750-2|TAF4B	RBBP8-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3120727539062	2	536.31148	1070.60841	-1.2529	-0.00067195	0.45141	0.00024209	-0.80151	-0.00042986	536.3116677184311	45.067	0.61892	44.919	44.628	45.247	-0.1488					45	17	3	0	0	0	0.40067	1	4336	4336		98.629	10.875	1	2598700			3454	19033	2015	2024	4651	4651					0.07592816880332975
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.7923889160156	2	475.792727	949.5709	0.40274	0.00019162	-1.1665	-0.00055501	-0.76376	-0.00036339	475.79217954765176	50.1	1.3367	50.1	49.694	51.03	0					108	38	5	0	0	0	0.27161	5	5227	5203;5215;5227;5241;5253		79.451	28.116	1	35171000			3455	4610	2016	2025	4652;4653;4654;4655;4656	4654					0.09409770405375184
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7923889160156	2	475.792727	949.5709	0.44455	0.00021151	-1.1605	-0.00055218	-0.71599	-0.00034066	475.79217517609885	50.296	1.2248	50.145	49.781	51.006	-0.1512					101	35	5	0	0	0	0.31247	6	5233	5200;5210;5221;5233;5246;5259		73.975	15.435	1	36941000			3456	4610	2016	2025	4657;4658;4659;4660;4661;4662	4660					0.09409770405375184
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.7926025390625	2	475.792727	949.5709	0.16856	8.0198E-05	-0.8578	-0.00040814	-0.68925	-0.00032794	475.7923264075969	49.999	1.2953	50.08	49.737	51.033	0.080994					110	37	6	0	0	0	0.18915	6	5166	5108;5116;5128;5140;5154;5166		90.777	24.67	1	38920000			3457	4610	2016	2025	4663;4664;4665;4666;4667;4668	4668					0.09409770405375184
APRWAGSSRP	10	Unmodified	_APRWAGSSRP_					0	0	0			REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF	REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.349853515625	2	542.785964	1083.55738	-0.52193	-0.0002833	-2.4167	-0.0013118	-2.9386	-0.0015951	542.7841059964749	25.836	0.42353	25.916	25.706	26.13	0.08009					15	9	2	0	0	0	0.03519	1	1190	1190		40.778	11.629	1	61776	+		3458	29339	2017	2026	4669	4669					0.018939126261329875
APRWAGSSRP	10	Unmodified	_APRWAGSSRP_					0	0	0			REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF	REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.785964	1083.55738	-0.99864	-0.00054205	-1.4923	-0.00080999	-2.4909	-0.001352	542.784390032229	26.022	0.50401	26.022	25.779	26.283	0	0.053341	0.00051955	NaN	40.778	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120300	+		3459	29339	2017	2026							0.018939126261329875
APSARKDVMS	10	Unmodified	_APSARKDVMS_					0	0	0			REV__NRIP1|p.E248D|1|0.32|ENSG00000180530|chr21:14967449-14967449|T/A|missense_variant	REV__NRIP1|p.E248D|1|0.32|ENSG00000180530|chr21:14967449-14967449|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2671508789062	2	531.274041	1060.53353	0.078935	4.1936E-05	-0.46213	-0.00024552	-0.38319	-0.00020358	531.2733604001294	23.397	0.55308	23.195	23.014	23.567	-0.20193					18	12	2	0	0	0	0.03519	1	904	904		25.574	0	1	119960	+		3460	37296	2018	2027	4670	4670					0.005683110774270972
APSCTGLAPR	10	Unmodified	_APSCTGLAPR_					0	0	0			REV__ENST00000399949.6_1_13:24858311-24860355:+|nuORF	REV__ENST00000399949.6_1_13:24858311-24860355:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7903747558594	2	486.750201	971.48585	-0.51869	-0.00025247	0.75007	0.0003651	0.23139	0.00011263	486.75026066302684	32.353	1.0388	32.365	31.742	32.781	0.011795					41	26	2	0	0	0	0.03519	1	2152	2152		54.776	33.829	1	225760	+		3461	31844	2019	2028	4671	4671					-0.001033431227483561
APSDNRVTSF	10	Unmodified	_APSDNRVTSF_					0	0	0		ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;ENST00000487086.1_1_20:1438843-1447469:-|nuORF;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.2673950195312	2	547.26727	1092.51999	-0.23785	-0.00013017	0.31767	0.00017385	0.07982	4.3683E-05	547.2674822729743	39.897	0.78684	39.897	39.594	40.381	0					61	21	4	0	0	0	0.22838	3	3460	3460;3472;3483		117.53	26.925	1	5622700			3462	1879	2020	2029	4672;4673;4674	4672					-0.022572234301378558
APSDNRVTSF	10	Unmodified	_APSDNRVTSF_					0	0	0		ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;ENST00000487086.1_1_20:1438843-1447469:-|nuORF;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.26708984375	2	547.26727	1092.51999	-1.3139	-0.00071906	0.80512	0.00044062	-0.5088	-0.00027845	547.2676432504253	39.961	0.70939	39.849	39.534	40.243	-0.11222					64	18	5	0	0	0	0.18296	4	3472	3448;3460;3472;3484		123.21	31.837	1	5170400			3463	1879	2020	2029	4675;4676;4677;4678	4677					-0.022572234301378558
APSDNRVTSF	10	Unmodified	_APSDNRVTSF_					0	0	0		ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;ENST00000487086.1_1_20:1438843-1447469:-|nuORF;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.2670288085938	2	547.26727	1092.51999	-1.4799	-0.00080988	1.578	0.00086356	0.098093	5.3683E-05	547.2681906231597	40.083	0.71978	40.106	39.807	40.527	0.023006					56	19	4	0	0	0	0.082298	4	3456	3431;3443;3456;3469		140.11	33.105	1	5314900			3464	1879	2020	2029	4679;4680;4681;4682	4681					-0.022572234301378558
APSGGRLLSA	10	Unmodified	_APSGGRLLSA_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000550033.5_1_12:53701834-53703447:-|nuORF;ENST00000546572.1_1_12:53702939-53703546:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MSMS	OPSCC_39_ClassI_Rep-3	3	464.7641296386719	2	464.764166	927.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.342	1	38.37	37.87	38.87	0.027275								0	0	0	0.17546	1	3151	3151		101.46	24.686	1				3465	2010	2021	2030	4683	4683					0.04712303128997064
APSIFFYLVD	10	Unmodified	_APSIFFYLVD_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	586.30419921875	2	586.305332	1170.59611	-1.934	-0.0011339	0.96331	0.0005648	-0.97069	-0.00056912	586.3042533236658	75.83	1.0457	75.83	75.551	76.597	0					83	26	4	0	0	0	0.79525	1	9343	9343		60.972	0.85368	1	2696200			3466	4245	2022	2031	4684	4684					0.017637804172636606
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(130)	0	0	1		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2626037597656	2	482.26261	962.510668	-0.66105	-0.0003188	-0.057348	-2.7657E-05	-0.7184	-0.00034646	482.26257039326777	35.735	0.91696	35.735	35.417	36.334	0					47	24	3	0	0	0	0.053401	2	2777	2777;2790		127.46	45.157	1	7266300			3467	3391	2023	2032	4685;4686	4685		127			0.027912919599771158
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(100)	0	0	1		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2626037597656	2	482.26261	962.510668	-1.0225	-0.00049311	-0.1487	-7.1711E-05	-1.1712	-0.00056482	482.2627625269888	35.616	1.3558	35.594	35.233	36.589	-0.021763					98	36	5	0	0	0	0.12914	1	2743	2743		104.06	21.752	1	7351200			3468	3391	2023	2032	4687	4687		127			0.027912919599771158
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(110)	0	0	1		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2625427246094	2	482.26261	962.510668	-0.86252	-0.00041596	3.7537	0.0018103	2.8912	0.0013943	482.2643150122896	37.68	4.4195	37.598	36.168	40.588	-0.082512					176	121	2	0	0	0	0.1158	3	3128	3104;3116;3128		107.01	30.223	1	19692000			3469	3391	2023	2032	4688;4689;4690	4690		127			0.027912919599771158
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(120)	0	0	1		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.26318359375	2	482.26261	962.510668	-1.0472	-0.00050502	3.8975	0.0018796	2.8504	0.0013746	482.26432791382655	37.815	3.7566	37.847	36.16	39.917	0.032269					243	103	5	0	0	0	0.067814	2	3096	3026;3096		122.18	36.817	1	17282000			3470	3391	2023	2032	4691;4692	4692		127			0.027912919599771158
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(99)	0	0	1		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MSMS	OPSCC_39_ClassI_Rep-3	3	482.2625732421875	2	482.26261	962.510668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.644	1	35.688	35.188	36.188	0.04406								0	0	0	0.073652	1	2704	2704		98.629	27.334	1				3471	3391	2023	2032	4693	4693		127			0.027912919599771158
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(110)	0	0	1		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MSMS	OPSCC_39_ClassI_Rep-3	3	482.2627258300781	2	482.26261	962.510668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.732	1	35.776	35.276	36.276	0.04406								0	0	0	0.03995	1	2717	2717		113.41	36.637	1				3472	3391	2023	2032	4694	4694		127			0.027912919599771158
APSKTSLIM	9	Unmodified	_APSKTSLIM_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.2648010253906	2	474.265153	946.515753	-0.24979	-0.00011847	-0.046008	-2.182E-05	-0.2958	-0.00014029	474.26506041694586	44.229	1.1001	44.229	43.658	44.758	0					55	31	2	0	0	0	0.062622	4	4220	4184;4196;4207;4220		124.08	41.969	1	7630500			3473	3391	2023	2033	4695;4696;4697;4698	4698					0.04035595822585947
APSKTSLIM	9	Unmodified	_APSKTSLIM_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.265380859375	2	474.265153	946.515753	-0.63918	-0.00030314	0.41781	0.00019815	-0.22137	-0.00010499	474.2652921428284	44.354	1.5697	44.209	43.781	45.35	-0.14471					80	45	2	0	0	0	0.03666	5	4215	4181;4193;4204;4215;4228		136.27	53.307	1	8084400			3474	3391	2023	2033	4699;4700;4701;4702;4703	4702					0.04035595822585947
APSKTSLIM	9	Unmodified	_APSKTSLIM_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.2652587890625	2	474.265153	946.515753	-0.022466	-1.0655E-05	-0.13876	-6.5811E-05	-0.16123	-7.6466E-05	474.2649971778589	44.252	1.3877	44.289	43.853	45.24	0.0369					61	39	2	0	0	0	0.043667	4	4152	4129;4141;4152;4164		131.03	50.615	1	7528500			3475	3391	2023	2033	4704;4705;4706;4707	4706					0.04035595822585947
APSLQRGP	8	Unmodified	_APSLQRGP_					0	0	0			REV__ENST00000322313.8_1_2:128458821-128459556:-|nuORF	REV__ENST00000322313.8_1_2:128458821-128459556:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.9264831542969	2	413.232502	824.450451	0.19024	7.8613E-05	0.24378	0.00010074	0.43402	0.00017935	413.2323938430511	31.387	1.4363	31.399	30.668	32.104	0.011797					55	34	3	0	0	0	0.027866	1	2050	2050		68.485	8.1907	1	939350	+		3476	30360	2024	2034	4708	4708					0.031203624117551954
APSMPLHW	8	Unmodified	_APSMPLHW_					0	0	0		ENST00000230640.9_1_5:54624602-54635860:+|nuORF	ENST00000230640.9_1_5:54624602-54635860:+|nuORF	ENST00000230640.9_1_5:54624602-54635860:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.2906494140625	2	469.73128	937.448008	-0.54359	-0.00025534	3.3361	0.0015671	2.7925	0.0013117	469.73269547168024	27.772	0.73259	27.615	27.185	27.918	-0.15664					50	17	4	0	0	0	0.027866	1	1575	1575		28.254	3.7503	1	2259900			3477	11234	2025	2035	4709	4709					-0.02321809317561474
APSMVHSSL	9	Oxidation (M)	_APSM(Oxidation (M))VHSSL_		APSM(1)VHSSL		APSM(46)VHSSL	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7288513183594	2	472.728935	943.443317	-0.62044	-0.0002933	0.50936	0.00024079	-0.11109	-5.2514E-05	472.7290502564176	30.071	0.44285	30.071	29.773	30.216	0					26	10	3	0	0	0	0.70186	1	1898	1898		45.952	7.1458	1	726860			3478	7359	2026	2036	4710	4710		307			-0.030667382509591334
APSMVHSSL	9	Unmodified	_APSMVHSSL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.73138427734375	2	464.731477	927.448402	-0.12577	-5.8448E-05	2.7724	0.0012884	2.6467	0.00123	464.7313983650083	40.193	1.0947	40.081	39.5	40.595	-0.11223					129	29	6	0	0	0	0.072054	1	3509	3509		120.62	49.325	1	2262800			3479	7359	2026	2037	4711	4711					-0.018224343883503025
APSMVHSSL	9	Unmodified	_APSMVHSSL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MSMS	OPSCC_39_ClassI_Rep-3	3	464.73162841796875	2	464.731477	927.448402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.375	1	40.398	39.898	40.898	0.023006								0	0	0	0.018056	1	3488	3488		133.81	48.453	1				3480	7359	2026	2037	4712	4712					-0.018224343883503025
APSMVHSSL	9	Unmodified	_APSMVHSSL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.731477	927.448402	0.037919	1.7622E-05	2.486	0.0011553	2.5239	0.0011729	464.73134945945225	40.108	0.9263	40.108	39.661	40.587	0	0.0135	-0.00014179	NaN	120.62	70	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2274800			3481	7359	2026	2037							-0.018224343883503025
APSPAPTPTP	10	Unmodified	_APSPAPTPTP_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.2451477050781	2	468.245275	934.475997	0.1514	7.0893E-05	-2.5839	-0.0012099	-2.4325	-0.001139	468.2444836544924	100.26	1.8708	100.27	99.868	101.74	0.010117					69	45	3	0	0	0	1.0781	1	12773	12773		35.618	1.4457	1	431410	+		3482	21760	2027	2038	4713	4713					0.006137921435083626
APSPAPTPTP	10	Unmodified	_APSPAPTPTP_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.245275	934.475997	0.30626	0.0001434	-1.2896	-0.00060386	-0.98336	-0.00046046	468.2444599700977	100.12	1.8009	100.12	99.358	101.16	0	-0.1108	0.00048653	NaN	35.618	62	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448290	+		3483	21760	2027	2038							0.006137921435083626
APSPAPTPTP	10	Unmodified	_APSPAPTPTP_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	468.245275	934.475997	0.1514	7.0893E-05	-2.5839	-0.0012099	-2.4325	-0.001139	468.2444836544924	100.26	1.8708	100.27	99.868	101.74	0.010117	0.039045	-0.00072551	NaN	35.618	69	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431410	+		3484	21760	2027	2038							0.006137921435083626
APSPAPTPTP	10	Unmodified	_APSPAPTPTP_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	468.245275	934.475997	0.95903	0.00044906	-2.9179	-0.0013663	-1.9589	-0.00091724	468.2441686011801	100.31	2.0163	100.3	99.254	101.27	-0.0050812	0.071751	-0.0010383	NaN	35.618	75	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509640	+		3485	21760	2027	2038							0.006137921435083626
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.2765808105469	2	469.276909	936.539266	-0.29578	-0.0001388	-0.18115	-8.5008E-05	-0.47693	-0.00022381	469.2768869074988	48.419	1.0691	48.419	48.003	49.072	0					63	30	3	0	0	0	0.18994	1	4961	4961		90.601	5.6853	1	5500800			3486	6864	2028	2039	4714	4714					0.06845777651415119
APSPRQPAL	9	Unmodified	_APSPRQPAL_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.7667541503906	2	468.766709	935.518865	0.74498	0.00034922	-0.52731	-0.00024718	0.21768	0.00010204	468.7661908310874	36.825	1.2615	36.825	36.44	37.702	0					76	33	4	0	0	0	0.19099	1	2960	2960		90.37	28.262	1	2155700			3487	15752	2029	2040	4715	4715					0.048526069916078995
APSPRQPAL	9	Unmodified	_APSPRQPAL_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.76654052734375	2	468.766709	935.518865	0.0096818	4.5385E-06	0.084767	3.9736E-05	0.094448	4.4274E-05	468.7664652516692	36.671	0.93921	36.608	36.259	37.198	-0.063385					62	24	4	0	0	0	0.057894	2	2927	2915;2927		125.81	28.262	1	2170000			3488	15752	2029	2040	4716;4717	4717					0.048526069916078995
APSPRQPAL	9	Unmodified	_APSPRQPAL_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	468.766709	935.518865	0.31011	0.00014537	-0.20047	-9.3973E-05	0.10964	5.1398E-05	468.7663648896812	36.785	0.90552	36.823	36.478	37.383	0.038044	0.071153	3.0676E-05	NaN	125.81	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2054800			3489	15752	2029	2040							0.048526069916078995
APSPSSSRSSF	11	Unmodified	_APSPSSSRSSF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.2643432617188	2	555.264727	1108.5149	-0.25068	-0.00013919	-0.0069664	-3.8682E-06	-0.25765	-0.00014306	555.2646421692749	31.982	0.74892	31.982	31.669	32.418	0					54	18	4	0	0	0	0.27721	2	2186	2174;2186		91.265	20.449	1	2780600			3490	9618	2030	2041	4718;4719	4719					-0.03501527292746687
APSPSSSRSSF	11	Unmodified	_APSPSSSRSSF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.2642211914062	2	555.264727	1108.5149	-0.6028	-0.00033471	0.23131	0.00012844	-0.37148	-0.00020627	555.2648082316647	31.832	0.75462	31.843	31.505	32.26	0.011797					63	18	5	0	0	0	0.00029723	3	2135	2135;2145;2157		160.82	78.071	1	2995600			3491	9618	2030	2041	4720;4721;4722	4720					-0.03501527292746687
APSPSSSRSSF	11	Unmodified	_APSPSSSRSSF_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.26416015625	2	555.264727	1108.5149	-0.26354	-0.00014633	-0.065013	-3.6099E-05	-0.32855	-0.00018243	555.2646375430346	31.586	0.8418	31.655	31.327	32.169	0.06896					58	20	4	0	0	0	0.045773	3	2066	2066;2075;2089		122.94	42.485	1	3059800			3492	9618	2030	2041	4723;4724;4725	4723					-0.03501527292746687
APSQFQAR	8	Unmodified	_APSQFQAR_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.22491455078125	2	452.735409	903.456264	-0.63396	-0.00028701	-0.57277	-0.00025931	-1.2067	-0.00054633	452.7351454415152	40.083	0.43478	40.106	39.84	40.275	0.023006					18	11	2	0	0	0	0.027866	1	3463	3463		33.516	0	1	573990			3493	4295	2031	2042	4726	4726					0.0006746092342382326
APSQQRQQI	9	Unmodified	_APSQQRQQI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2828369140625	2	528.283254	1054.55196	-1.1316	-0.0005978	0.26751	0.00014132	-0.86408	-0.00045648	528.2834348688536	24.076	0.96004	24.076	23.737	24.697	0					73	21	4	0	0	0	0.29158	3	1004	1004;1013;1027		76.774	27.386	1	3302400			3494	8454	2032	2043	4727;4728;4729	4727					0.026861890436521207
APSQQRQQI	9	Unmodified	_APSQQRQQI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2828369140625	2	528.283254	1054.55196	-1.2375	-0.00065372	0.36907	0.00019497	-0.86838	-0.00045875	528.2834566473409	24.11	0.97009	24.063	23.699	24.669	-0.047148					60	21	4	0	0	0	0.10174	3	992	992;1003;1015		110.12	41.333	1	3096700			3495	8454	2032	2043	4730;4731;4732	4730					0.026861890436521207
APSQSGAASEP	11	Unmodified	_APSQSGAASEP_					0	0	0			REV__nc|ENSG00000157168|Q02297-12|NRG1	REV__nc|ENSG00000157168|Q02297-12|NRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.23193359375	2	501.230353	1000.44615	-0.89553	-0.00044886	1.6075	0.00080573	0.71198	0.00035687	501.23100260366385	38.398	1.444	38.398	37.632	39.076	0					99	40	4	0	0	0	0.93459	1	3202	3202		49.536	4.5138	1	4186900	+		3496	25117	2033	2044	4733	4733					-0.054051915924674176
APSQSGAASEP	11	Unmodified	_APSQSGAASEP_					0	0	0			REV__nc|ENSG00000157168|Q02297-12|NRG1	REV__nc|ENSG00000157168|Q02297-12|NRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2311096191406	2	501.230353	1000.44615	-1.4086	-0.00070605	1.9351	0.00096992	0.52646	0.00026388	501.23129103969774	38.586	1.6064	38.613	37.746	39.353	0.027275					120	44	4	0	0	0	0.93459	1	3185	3185		49.536	3.5638	1	4092900	+		3497	25117	2033	2044	4734	4734					-0.054051915924674176
APSRGGAPGP	10	Unmodified	_APSRGGAPGP_					0	0	0		ENSG00000283632|ENST00000413988|EXOC3L2	ENSG00000283632|ENST00000413988|EXOC3L2	ENSG00000283632|ENST00000413988|EXOC3L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.25531005859375	2	433.727584	865.440614	0.4744	0.00020576	-4.1729	-0.0018099	-3.6985	-0.0016041	433.7269440226004	102.97	0.39944	102.84	102.58	102.98	-0.12724					21	9	3	0	0	0	0.03519	1	12801	12801		82.305	13.82	1	274490			3498	11089	2034	2045	4735	4735					0.002511744063781407
APSRLCVP	8	Carbamidomethyl (C)	_APSRLC(Carbamidomethyl (C))VP_	APSRLC(1)VP		APSRLC(50)VP		0	1	0			REV__ENST00000584425.1_1_18:71740698-71749311:-|nuORF	REV__ENST00000584425.1_1_18:71740698-71749311:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.24505615234375	2	450.242012	898.469472	-0.11635	-5.2386E-05	1.1248	0.00050642	1.0084	0.00045404	450.2420040416061	31.108	0.78379	30.867	30.585	31.369	-0.24109					59	19	6	0	0	0	0.91239	1	2041	2041		50.025	7.5501	1	1122300	+		3499	24117	2035	2046	4736	4736	315				0.0161757571115686
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(100)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.75006103515625	2	480.750201	959.48585	-0.79196	-0.00038074	0.31587	0.00015186	-0.47609	-0.00022888	480.75038998821515	30.405	0.73777	30.405	29.855	30.592	0					65	17	5	0	0	0	0.14024	3	1943	1931;1943;1955		101.6	34.345	1	8151900			3500	7696	2036	2047	4737;4738;4739	4738		315			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(100)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7500305175781	2	480.750201	959.48585	-0.65828	-0.00031647	-0.060811	-2.9235E-05	-0.71909	-0.0003457	480.7501134443818	30.792	0.75086	30.792	30.592	31.343	0					55	17	4	0	0	0	0.14024	4	2004	1980;1991;2004;2022		101.6	40.629	1	6913300			3501	7696	2036	2047	4740;4741;4742;4743	4742		315			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(90)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7499694824219	2	480.750201	959.48585	-0.18537	-8.9117E-05	-0.13453	-6.4674E-05	-0.3199	-0.00015379	480.7500768326652	32.962	4.3501	32.962	31.257	35.608	0					298	113	4	0	0	0	0.19099	6	2333	2235;2293;2321;2333;2345;2370		90.37	21.885	1	8486100			3502	7696	2036	2047	4744;4745;4746;4747;4748;4749	4747		315			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(88)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7492980957031	2	480.750201	959.48585	-0.3791	-0.00018225	-0.0026081	-1.2538E-06	-0.38171	-0.00018351	480.75022779725373	30.386	0.94096	30.395	29.597	30.538	0.0086708					50	22	3	0	0	0	0.2101	3	1912	1912;1922;1933		87.696	32.787	1	8170200			3503	7696	2036	2047	4750;4751;4752	4750		315			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(80)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7500305175781	2	480.750201	959.48585	-0.27171	-0.00013063	-0.4078	-0.00019605	-0.67951	-0.00032668	480.74997025581683	30.718	0.716	30.727	30.538	31.254	0.0086708					47	16	3	0	0	0	0.26966	4	1994	1957;1969;1982;1994		79.713	21.813	1	7793500			3504	7696	2036	2047	4753;4754;4755;4756	4756		315			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(80)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7508239746094	2	480.750201	959.48585	-0.41903	-0.00020145	0.11825	5.6848E-05	-0.30078	-0.0001446	480.7502303488981	32.86	4.2442	32.867	31.252	35.496	0.0066223					283	110	4	0	0	0	0.26966	7	2269	2255;2269;2290;2301;2312;2324;2336		79.713	17.024	1	7899400			3505	7696	2036	2047	4757;4758;4759;4760;4761;4762;4763	4758		315			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(93)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7502136230469	2	480.750201	959.48585	-0.93611	-0.00045004	0.36519	0.00017556	-0.57093	-0.00027447	480.75035434316624	30.089	1.8478	30.163	29.446	31.294	0.074314					135	44	5	0	0	0	0.17822	6	1888	1831;1853;1864;1876;1888;1918		93.195	32.902	1	7655700			3506	7696	2036	2047	4764;4765;4766;4767;4768;4769	4768		315			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(70)VL	0	0	1		ENSG00000167526|ENST00000311528|RPL13;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.75079345703125	2	480.750201	959.48585	-0.011205	-5.3867E-06	-0.31588	-0.00015186	-0.32708	-0.00015724	480.75001617987033	32.716	4.5628	32.779	30.991	35.554	0.062885					321	117	4	0	0	0	0.34489	5	2209	2209;2248;2260;2272;2285		69.628	22.861	1	7848800			3507	7696	2036	2047	4770;4771;4772;4773;4774	4770		315			0.00448656877256326
APSRRNRSSVL	11	Unmodified	_APSRRNRSSVL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.9057922363281	3	414.905698	1241.69527	-0.12171	-5.0498E-05	-0.015171	-6.2947E-06	-0.13688	-5.6793E-05	414.905759165599	21.171	1.9169	21.171	20.562	22.479	0					106	39	5	0	0	0	0.96926	1	642	642		43.651	1.2547	1	3796700			3508	18451	2037	2048	4775	4775					0.08408616154747506
APSVRSLSL	9	Unmodified	_APSVRSLSL_					0	0	0		nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3;PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	nc|ENSG00000184363|Q9Y446-2|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2740478515625	2	465.274367	928.53418	-0.22809	-0.00010613	0.92552	0.00043062	0.69743	0.0003245	465.274770937644	51.959	0.65508	51.959	51.736	52.391	0					53	17	5	0	0	0	0.20652	1	5552	5552		88.177	13.922	1	5819000			3509	9330	2038	2049	4776	4776					0.06705473788815652
APSVRSLSL	9	Unmodified	_APSVRSLSL_					0	0	0		nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3;PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	nc|ENSG00000184363|Q9Y446-2|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2742004394531	2	465.274367	928.53418	-0.12541	-5.8348E-05	0.94451	0.00043946	0.81911	0.00038111	465.2747649908513	52.079	0.64994	51.932	51.676	52.326	-0.14735					47	17	4	0	0	0	0.247	1	5548	5548		82.75	11.455	1	5558300			3510	9330	2038	2049	4777	4777					0.06705473788815652
APSVSIHEI	9	Unmodified	_APSVSIHEI_					0	0	0			REV__ENSG00000115368|ENST00000314761|WDR75	REV__ENSG00000115368|ENST00000314761|WDR75	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7579345703125	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.90698	1	13224	13224		31.955	0.42505	1	4565500	+		3511	22199	2039	2050	4778	4778					0.024854810348415413
APSYRTLEL	9	Unmodified	_APSYRTLEL_					0	0	0		nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	REV__ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000166444|P78524-3|DENND2B	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2843627929688	2	525.284931	1048.55531	0.13747	7.2208E-05	0.37747	0.00019828	0.51494	0.00027049	525.2849154338056	55.426	0.87789	55.426	54.944	55.822	0					46	24	3	0	0	0	0.35556	1	6131	6131		68.846	19.405	1	2161700			3512	19884;7562	2040	2051	4779	4779					0.032974390976505674
APSYRTLEL	9	Unmodified	_APSYRTLEL_					0	0	0		nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	REV__ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000166444|P78524-3|DENND2B	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2846069335938	2	525.284931	1048.55531	-0.34052	-0.00017887	0.75323	0.00039566	0.4127	0.00021679	525.2851331791761	55.481	0.88951	55.325	54.888	55.778	-0.15602					49	24	4	0	0	0	0.33603	1	6107	6107		70.816	9.8443	1	2161200			3513	19884;7562	2040	2051	4780	4780					0.032974390976505674
APSYRTLEL	9	Unmodified	_APSYRTLEL_					0	0	0		nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	REV__ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000166444|P78524-3|DENND2B	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2849731445312	2	525.284931	1048.55531	-0.76412	-0.00040138	1.7785	0.00093419	1.0143	0.00053281	525.2853402923132	55.065	0.93704	55.164	54.807	55.744	0.098015					41	25	2	0	0	0	0.46427	1	5996	5996		61.691	2.9093	1	2659300			3514	19884;7562	2040	2051	4781	4781					0.032974390976505674
APTATRDPPS	10	Unmodified	_APTATRDPPS_					0	0	0		ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.24029541015625	2	506.756538	1011.49852	-1.0928	-0.0005538	0.76367	0.000387	-0.32917	-0.00016681	506.7568039666964	29.909	0.57006	29.987	29.646	30.216	0.078344					22	13	2	0	0	0	0.03519	1	1856	1856		14.865	6.0425	1	311540			3515	13708	2041	2052	4782	4782					-0.006766084588662125
APTATRDPPS	10	Unmodified	_APTATRDPPS_					0	0	0		ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.756538	1011.49852	-1.4019	-0.00071044	0.98778	0.00050057	-0.41416	-0.00020988	506.75689501847654	30.271	0.49121	30.271	30.017	30.508	0	0.13444	0.00045186	NaN	25.574	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307380			3516	13708	2041	2052							-0.006766084588662125
APTATRDPPS	10	Unmodified	_APTATRDPPS_					0	0	0		ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.756538	1011.49852	-0.66524	-0.00033712	0.21757	0.00011026	-0.44767	-0.00022686	506.7566639041907	30.214	0.65741	30.223	29.88	30.538	0.0086708	0.085756	-0.00032876	NaN	25.574	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308040			3517	13708	2041	2052							-0.006766084588662125
APTATRDPPS	10	Unmodified	_APTATRDPPS_					0	0	0		ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.756538	1011.49852	-0.39418	-0.00019975	-0.8261	-0.00041863	-1.2203	-0.00061838	506.75622354004815	30.386	0.33195	30.142	29.991	30.323	-0.24415	0.0045951	-0.0013865	NaN	25.574	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36961			3518	13708	2041	2052							-0.006766084588662125
APTATRDPPS	10	Unmodified	_APTATRDPPS_					0	0	0		ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	ENST00000404930.1_1_6:106115422-106115650:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.756538	1011.49852	-0.8796	-0.00044574	0.60364	0.0003059	-0.27597	-0.00013985	506.7563851930237	30.24	0.24674	30.062	29.997	30.243	-0.17818	-0.075107	6.2517E-05	NaN	25.574	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43561			3519	13708	2041	2052							-0.006766084588662125
APTGEGFR	8	Unmodified	_APTGEGFR_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.7083740234375	2	417.70886	833.403166	0.45495	0.00019004	-1.1998	-0.00050116	-0.74485	-0.00031113	417.7081311418408	98.053	1.0099	98.053	97.594	98.604	0					44	23	3	0	0	0	1.0574	1	12510	12510		25.45	1.2474	1	264120			3520	9449	2042	2053	4783	4783					-0.020199168592398564
APTGSGKTL	9	Unmodified	_APTGSGKTL_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626651-132627411:-|nuORF;ENSG00000278053|ENST00000617633|DDX52	ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENSG00000278053|ENST00000617633|DDX52	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.23272705078125	2	416.232168	830.449782	-0.44827	-0.00018659	0.60392	0.00025137	0.15565	6.4786E-05	416.2322986471698	23.721	1.0372	23.66	23.347	24.384	-0.060862					47	23	4	0	0	0	0.043667	3	955	944;955;967		131.03	0	1	1911400			3521	9414;11061	2043	2054	4784;4785;4786	4785					0.027775229720305106
APTPARPVL	9	Unmodified	_APTPARPVL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.27960205078125	2	461.279452	920.544351	0.22538	0.00010396	-0.37639	-0.00017362	-0.15101	-6.9659E-05	461.27917608156173	42.587	0.5341	42.587	42.289	42.823	0					38	14	3	0	0	0	0.53979	1	3945	3945		56.721	1.2168	1	6756400			3522	9477	2044	2055	4787	4787					0.08090081514046688
APTPARPVL	9	Unmodified	_APTPARPVL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2795715332031	2	461.279452	920.544351	0.11547	5.3265E-05	-0.27145	-0.00012521	-0.15598	-7.1949E-05	461.2792388352515	42.777	0.50159	42.638	42.345	42.846	-0.13929					36	13	3	0	0	0	0.53979	1	3952	3952		56.721	5.3856	1	7065800			3523	9477	2044	2055	4788	4788					0.08090081514046688
APTPARPVL	9	Unmodified	_APTPARPVL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	ENSG00000185803|ENST00000643944|SLC52A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.27960205078125	2	461.279452	920.544351	0.63098	0.00029106	-0.74354	-0.00034298	-0.11256	-5.1924E-05	461.2790168142663	42.709	0.4703	42.735	42.427	42.897	0.026012					35	12	3	0	0	0	0.5973	1	3887	3887		52.937	3.4952	1	6928000			3524	9477	2044	2055	4789	4789					0.08090081514046688
APTPLGHVS	9	Unmodified	_APTPLGHVS_					0	0	0			REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.7419128417969	2	439.74016	877.465767	3.1144	0.0013695	1.1511	0.0005062	4.2655	0.0018757	439.7404976851655	18.726	0.64468	18.483	18.274	18.919	-0.24256					24	12	3	0	0	0	0.70186	1	312	312		45.952	0	1	99397	+		3525	27925	2045	2056	4790	4790					0.022132292089509065
APTPLGHVS	9	Unmodified	_APTPLGHVS_					0	0	0			REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	439.74016	877.465767	0.39661	0.00017441	3.745	0.0016468	4.1416	0.0018212	439.7416961598184	18.676	0.69247	18.52	18.346	19.039	-0.15637	0.0072717	0.00090946	NaN	45.952	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90179	+		3526	27925	2045	2056							0.022132292089509065
APTPLGHVS	9	Unmodified	_APTPLGHVS_					0	0	0			REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	439.74016	877.465767	0.28967	0.00012738	3.6227	0.001593	3.9124	0.0017204	439.74161801087087	18.738	0.89029	18.535	18.312	19.202	-0.20371	0.022155	0.00080191	NaN	45.952	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67957	+		3527	27925	2045	2056							0.022132292089509065
APTPLGHVS	9	Unmodified	_APTPLGHVS_					0	0	0			REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	REV__ENST00000589558.1_1_19:45321789-45322216:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	439.74016	877.465767	3.1144	0.0013695	1.1511	0.0005062	4.2655	0.0018757	439.7404976851655	18.726	0.64468	18.483	18.274	18.919	-0.24256	-0.029426	-0.0013718	NaN	45.952	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99397	+		3528	27925	2045	2056							0.022132292089509065
APTPRIKAE	9	Unmodified	_APTPRIKAE_					0	0	0		nc|ENSG00000065717|Q04725-3|TLE2;nc|ENSG00000065717|Q04725-2|TLE2;ENSG00000065717|ENST00000262953|TLE2;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;TLE1|p.G618Efs*69|1|0.37|ENSG00000196781|chr9:81587805-81587805|C/-|frameshift_variant;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;TLE1|p.T727Pfs*28|1|0.17|ENSG00000196781|chr9:81584475-81584475|C/-|frameshift_variant;ENSG00000196781|ENST00000376499|TLE1;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4	nc|ENSG00000065717|Q04725-3|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.776611328125	2	491.787641	981.56073	-0.27074	-0.00013315	1.4052	0.00069104	1.1344	0.00055789	491.7882705216578	46.297	0.55401	46.348	46.131	46.685	0.051399					32	15	3	0	0	0	0.024541	1	4520	4520		11.511	0	1	1747000			3529	18064	2046	2057	4791	4791					0.06921162680134785
APTPVPRAL	9	Unmodified	_APTPVPRAL_					0	0	0		ENST00000469698.5_1_17:39991516-39991918:-|nuORF;ENST00000476921.5_1_17:39991516-39992209:-|nuORF	ENST00000469698.5_1_17:39991516-39991918:-|nuORF	ENST00000469698.5_1_17:39991516-39991918:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.2793884277344	2	461.279452	920.544351	0.63098	0.00029106	-0.74354	-0.00034298	-0.11256	-5.1924E-05	461.2790168142663	42.709	0.4703	42.735	42.427	42.897	0.026012					35	12	3	0	0	0	0.62163	1	3875	3875		51.335	7.2187	1	6928000			3530	14913	2047	2058	4792	4792					0.08090081514046688
APTVPIAHG	9	Unmodified	_APTVPIAHG_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4|QRICH2	REV__nc|ENSG00000129646|Q9H0J4|QRICH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.2586669921875	2	431.742702	861.470852	-0.13993	-6.0412E-05	0.89891	0.0003881	0.75898	0.00032768	431.74292312607196	36.032	0.41759	36.07	35.816	36.234	0.038044					18	11	2	0	0	0	0.024386	1	2724	2724		25.45	0	1	200120	+		3531	23055	2048	2059	4793	4793					0.03457533071571106
APTVRSKAL	9	Unmodified	_APTVRSKAL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.79095458984375	2	471.790184	941.565815	-0.19693	-9.291E-05	0.47971	0.00022632	0.28278	0.00013342	471.79020406707554	25.59	0.7191	25.59	25.324	26.043	0					37	16	4	0	0	0	0.6238	2	1245	1233;1245		51.193	7.1399	1	691920			3532	6209	2049	2060	4794;4795	4795					0.0926946654275298
APTVRSKAL	9	Unmodified	_APTVRSKAL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.790184	941.565815	-0.28202	-0.00013305	0.66138	0.00031203	0.37936	0.00017898	471.7902771753706	25.698	0.63537	25.664	25.351	25.987	-0.034397	0.044251	0.00033493	NaN	51.193	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663990			3533	6209	2049	2060							0.0926946654275298
APVASIWLS	9	Unmodified	_APVASIWLS_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2530822753906	2	472.26601	942.517468	-0.65372	-0.00030873	-2.6786	-0.001265	-3.3323	-0.0015737	472.26431235202676	29.993	0.37534	30.071	29.883	30.258	0.078344					11	8	2	0	0	0	0.024541	1	1866	1866		20.482	4.0087	1	36712			3534	4060	2050	2061	4796	4796					0.04390972902854173
APVGPPTPVK	10	Unmodified	_APVGPPTPVK_					0	0	0			REV__ENSG00000198807|ENST00000361487|PAX9	REV__ENSG00000198807|ENST00000361487|PAX9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.24554443359375	2	481.78711	961.559667	-0.83564	-0.0004026	0.84476	0.000407	0.00912	4.3939E-06	481.7872146512521	60.426	0.71212	60.25	59.885	60.597	-0.1761					33	17	3	0	0	0	0.03519	1	6775	6775		19.997	7.0376	1	646170	+		3535	28485	2051	2062	4797	4797					0.07734948311224343
APVGPRAAMS	10	Unmodified	_APVGPRAAMS_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.75274658203125	2	478.752744	955.490935	0.066148	3.1668E-05	-0.65392	-0.00031306	-0.58777	-0.0002814	478.75251791046117	32.512	0.64111	32.512	32.186	32.827	0					55	16	4	0	0	0	0.62431	1	2267	2267		74.255	5.4682	1	19722000			3536	9412	2052	2063	4798	4798					0.011409607398604749
APVGPRAAMS	10	Unmodified	_APVGPRAAMS_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.752197265625	2	478.752744	955.490935	0.065349	3.1286E-05	-0.63707	-0.000305	-0.57173	-0.00027372	478.752473881619	33.469	0.98684	33.469	32.79	33.777	0					89	26	4	0	0	0	0.64538	2	2402	2402;2413		71.877	3.0906	1	14467000			3537	9412	2052	2063	4799;4800	4799					0.011409607398604749
APVGPRAAMS	10	Unmodified	_APVGPRAAMS_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7524719238281	2	478.752744	955.490935	-0.35702	-0.00017092	-0.29028	-0.00013897	-0.6473	-0.0003099	478.75263780541945	33.354	0.94904	33.361	32.738	33.687	0.0066223					82	25	4	0	0	0	0.64538	1	2389	2389		71.877	0.58177	1	13074000			3538	9412	2052	2063	4801	4801					0.011409607398604749
APVGPRAAMS	10	Unmodified	_APVGPRAAMS_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MSMS	OPSCC_39_ClassI_Rep-3	3	478.7524719238281	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.437	1	33.494	32.994	33.994	0.056572								0	0	0	0.33734	1	2363	2363		74.255	7.8258	1				3539	9412	2052	2063	4802	4802					0.011409607398604749
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENSG00000050165|ENST00000683431|DKK3;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3;ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.263427734375	2	425.263271	848.511988	-1.6389	-0.00069694	1.2546	0.00053352	-0.38429	-0.00016342	425.26367685877716	38.086	0.67037	38.086	37.803	38.473	0					56	19	4	0	0	0	0.22754	3	3168	3156;3168;3182		85.359	27.548	1	6274500			3540	1138;16118	2053	2064	4803;4804;4805	4804					0.08167294111046886
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENSG00000050165|ENST00000683431|DKK3;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3;ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.26318359375	2	425.263271	848.511988	-1.0945	-0.00046544	0.78759	0.00033493	-0.30688	-0.00013051	425.263449687963	38.018	0.7035	37.935	37.671	38.374	-0.082516					62	19	4	0	0	0	0.22754	3	3131	3131;3141;3155		85.359	19.462	1	5873300			3541	1138;16118	2053	2064	4806;4807;4808	4806					0.08167294111046886
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENSG00000050165|ENST00000683431|DKK3;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3;ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.2635803222656	2	425.263271	848.511988	-1.2953	-0.00055084	0.89811	0.00038193	-0.39718	-0.00016891	425.26351102851777	38.15	0.77296	38.178	37.918	38.691	0.027279					65	21	4	0	0	0	0.15889	3	3110	3110;3119;3133		97.473	31.575	1	4942800			3542	1138;16118	2053	2064	4809;4810;4811	4809					0.08167294111046886
APVLPHTAV	9	Unmodified	_APVLPHTAV_					0	0	0		nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000471231.6_1_16:30937150-30941463:+|nuORF;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000089094|Q8NHM5-2|KDM2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.7662048339844	2	452.766178	903.517802	0.45593	0.00020643	-0.22039	-9.9785E-05	0.23554	0.00010664	452.7659326210441	46.49	1.0552	46.49	46.056	47.111	0					75	28	4	0	0	0	0.20304	1	4607	4607		88.643	17.265	1	2199700			3543	1893;2074	2054	2065	4812	4812					0.062183926226907715
APVLPHTAV	9	Unmodified	_APVLPHTAV_					0	0	0		nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000471231.6_1_16:30937150-30941463:+|nuORF;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000089094|Q8NHM5-2|KDM2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.766178	903.517802	-0.64472	-0.00029191	0.88823	0.00040216	0.2435	0.00011025	452.7664444415138	46.57	1.0269	46.417	45.988	47.015	-0.15301	-0.036916	0.00051717	NaN	88.643	74	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2278600			3544	1893;2074	2054	2065							0.062183926226907715
APVLPHTAV	9	Unmodified	_APVLPHTAV_					0	0	0		nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000471231.6_1_16:30937150-30941463:+|nuORF;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000089094|Q8NHM5-2|KDM2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	452.766178	903.517802	0.04431	2.0062E-05	0.20023	9.0658E-05	0.24454	0.00011072	452.76615047319797	46.404	1.0302	46.455	46.031	47.061	0.051399	0.0013111	-0.00010583	NaN	88.643	78	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2472800			3545	1893;2074	2054	2065							0.062183926226907715
APVLTDPI	8	Unmodified	_APVLTDPI_					0	0	0		ENST00000461408.2_1_15:59041051-59041905:-|nuORF	ENST00000461408.2_1_15:59041051-59041905:-|nuORF	ENST00000461408.2_1_15:59041051-59041905:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.5502014160156	2	413.239461	824.46437	-0.092391	-3.8179E-05	-0.87419	-0.00036125	-0.96658	-0.00039943	413.2390046527638	29.264	0.49626	29.267	29.055	29.551	0.0031376					21	12	2	0	0	0	0.027866	1	1803	1803		26.796	0	1	385830			3546	14683	2055	2066	4813	4813					0.04511595120175116
APVPERKLL	9	Unmodified	_APVPERKLL_					0	0	0		ENST00000599699.2_1_19:18544176-18545088:+|nuORF	ENST00000599699.2_1_19:18544176-18545088:+|nuORF	ENST00000599699.2_1_19:18544176-18545088:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2803039550781	2	511.821484	1021.62842	-0.84443	-0.0004322	0.41534	0.00021258	-0.42909	-0.00021962	511.8215553133053	61.916	1.0035	61.916	61.18	62.183	0					71	26	4	0	0	0	0.024477	1	7107	7107		27.882	2.3082	1	1525500			3547	17494	2056	2067	4814	4814					0.11846612610952434
APVQEYAR	8	Unmodified	_APVQEYAR_					0	0	0		ENST00000556382.1_1_15:92977594-92988160:+|nuORF;ENSG00000140557|ENST00000268164|ST8SIA2	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7538146972656	2	467.243067	932.47158	-0.86335	-0.0004034	3.9031	0.0018237	3.0397	0.0014203	467.24477236786225	38.246	2.5372	38.246	37.45	39.988	0					121	71	3	0	0	0	0.027866	1	3075	3075		57.811	0	1	693550			3548	5426	2057	2068	4815	4815					0.0026432772060616117
APVSEFLL	8	Unmodified	_APVSEFLL_					0	0	0		ENSG00000183389|ENST00000641156|OR56A4	ENSG00000183389|ENST00000641156|OR56A4	ENSG00000183389|ENST00000641156|OR56A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.24542236328125	2	438.247286	874.48002	-0.5312	-0.0002328	-2.9433	-0.0012899	-3.4745	-0.0015227	438.2459887399183	27.432	0.58744	27.513	27.208	27.795	0.081291					39	15	3	0	0	0	0.40853	1	1459	1459		96.048	9.1131	1	1722500			3549	9223	2058	2069	4816	4816					0.03775881637238854
APVSPHSTF	9	Unmodified	_APVSPHSTF_					0	0	0		ENST00000425115.1_1_3:44751367-44751973:-|nuORF;ENSG00000171150|ENST00000394861|SOCS5	ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENST00000425115.1_1_3:44751367-44751973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7356262207031	2	471.737617	941.460681	-0.14404	-6.7949E-05	0.15803	7.4548E-05	0.01399	6.5994E-06	471.73752797056477	37.727	0.89163	37.759	37.377	38.269	0.032269					63	24	4	0	0	0	0.040175	1	3050	3050		133.47	70.163	1	2115000			3550	8119	2059	2070	4817	4817					-0.012390746536652841
APVSSKSSL	9	Unmodified	_APVSSKSSL_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.2454528808594	2	438.245275	874.475997	-0.5312	-0.0002328	1.6463	0.00072148	1.1151	0.00048869	438.2459887399183	27.432	0.58744	27.513	27.208	27.795	0.081291					39	15	3	0	0	0	0.1158	1	1448	1448		107.01	20.073	1	1722500			3551	7061	2060	2071	4818	4818					0.03373792143531773
APVVLGLKAI	10	Unmodified	_APVVLGLKAI_					0	0	0		nc|ENSG00000196209|Q5JXA9-3|SIRPB2;ENSG00000196209|ENST00000359801|SIRPB2	nc|ENSG00000196209|Q5JXA9-3|SIRPB2	nc|ENSG00000196209|Q5JXA9-3|SIRPB2	MSMS	OPSCC_39_ClassI_Rep-1	1	490.82940673828125	2	490.828778	979.643003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.374	1	66.374	65.874	66.874	0								0	0	0	0.76324	1	7897	7897		23.042	0.0057756	1				3552	9836	2061	2072	4819	4819					0.15236684759088348
APWAGVRIL	9	Unmodified	_APWAGVRIL_					0	0	0			REV__ENST00000510885.2_1_4:57459582-57460608:+|nuORF	REV__ENST00000510885.2_1_4:57459582-57460608:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7769470214844	2	491.795269	981.575986	-0.97726	-0.00048061	2.3151	0.0011386	1.3378	0.00065794	491.7962579473352	46.057	0.62174	45.905	45.756	46.378	-0.15157					33	17	3	0	0	0	0.024535	1	4587	4587		25.45	7.1258	1	475050	+		3553	34112	2062	2073	4820	4820					0.08446074267999393
APWAGVRIL	9	Unmodified	_APWAGVRIL_					0	0	0			REV__ENST00000510885.2_1_4:57459582-57460608:+|nuORF	REV__ENST00000510885.2_1_4:57459582-57460608:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.795269	981.575986	-0.31729	-0.00015604	1.6677	0.00082017	1.3504	0.00066412	491.7961502353113	45.934	0.4094	45.986	45.83	46.239	0.051395	-0.042057	0.000296	NaN	33.516	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733060	+		3554	34112	2062	2073							0.08446074267999393
APWGLRRG	8	Unmodified	_APWGLRRG_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2875061035156	2	456.761761	911.508969	0.34292	0.00015663	-1.3161	-0.00060112	-0.97313	-0.00044449	456.7608509338212	57.754	0.49397	57.579	57.19	57.684	-0.1749					25	12	3	0	0	0	0.027866	1	6478	6478		37.028	27.323	1	518400			3555	8195	2063	2074	4821	4821					0.04967463776893055
APWGLRRG	8	Unmodified	_APWGLRRG_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.761761	911.508969	-0.1764	-8.0571E-05	-1.1772	-0.0005377	-1.3536	-0.00061827	456.7612257110667	57.399	0.36497	57.494	57.243	57.608	0.095306	-0.042439	6.8118E-05	NaN	37.028	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584110			3556	8195	2063	2074							0.04967463776893055
APWIRLMVKV	10	Unmodified	_APWIRLMVKV_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.7250061035156	3	404.914366	1211.72127	0.18088	7.3243E-05	0.13318	5.3926E-05	0.31406	0.00012717	404.9141868567435	20.213	0.54052	20.108	19.884	20.424	-0.10477					21	10	3	0	0	0	0.03519	1	521	521		12.207	4.4022	1	52225	+		3557	20343	2064	2075	4822	4822					0.12387794072651559
APWLLGRAV	9	Unmodified	_APWLLGRAV_					0	0	0		ENST00000373055.5_1_1:38158222-38158438:+|nuORF	ENST00000373055.5_1_1:38158222-38158438:+|nuORF	ENST00000373055.5_1_1:38158222-38158438:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.79595947265625	2	491.795269	981.575986	-0.043829	-2.1555E-05	1.219	0.00059949	1.1752	0.00057794	491.79569659030346	55.146	1.8896	54.94	54.318	56.207	-0.20613					161	51	4	0	0	0	1.0101	1	5965	5965		18.324	0.95945	1	3172100			3558	13068	2065	2076	4823	4823					0.08446074267999393
APWPLSVPPV	10	Unmodified	_APWPLSVPPV_					0	0	0			REV__ENST00000308511.8_1_8:22462282-22463268:+|nuORF	REV__ENST00000308511.8_1_8:22462282-22463268:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2802734375	2	531.80276	1061.59097	-0.28499	-0.00015156	2.5556	0.0013591	2.2706	0.0012075	531.8042593636295	80.841	0.69643	80.695	80.368	81.064	-0.146					27	15	2	0	0	0	0.03519	1	9724	9724		30.504	5.9844	1	314120	+		3559	30153	2066	2077	4824	4824					0.06263521345317713
APWPLSVPPV	10	Unmodified	_APWPLSVPPV_					0	0	0			REV__ENST00000308511.8_1_8:22462282-22463268:+|nuORF	REV__ENST00000308511.8_1_8:22462282-22463268:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.80276	1061.59097	-0.069344	-3.6877E-05	3.6014	0.0019152	3.5321	0.0018784	531.8042020142866	80.882	0.93159	80.644	80.123	81.055	-0.23784	-0.034841	0.00078394	NaN	23.042	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417070	+		3560	30153	2066	2077							0.06263521345317713
APWRESDP	8	Unmodified	_APWRESDP_					0	0	0			REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|93	REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|93	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	479.224874	956.435195	-0.49398	-0.00023673	0.41243	0.00019765	-0.081552	-3.9082E-05	479.2249873391879	37.719	0.57769	37.751	37.45	38.028	0.032269					24	15	2	0	0	0	0.027866	1	3083	3083		57.811	0	1	187220	+		3561	19370	2067	2078	4825	4825					-0.04476549176104072
APYERRAM	8	Unmodified	_APYERRAM_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.25018310546875	2	497.250369	992.486184	-0.72756	-0.00036178	0.7724	0.00038407	0.044832	2.2293E-05	497.25062997589515	25.438	1.0929	25.211	24.797	25.89	-0.22683					59	25	4	0	0	0	0.80469	2	1223	1212;1223		58.782	9.3404	1	1732700			3562	4404	2068	2079	4826;4827	4827					-0.010359234028896935
APYERRAM	8	Unmodified	_APYERRAM_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2505187988281	2	497.250369	992.486184	-0.18209	-9.0543E-05	0.12883	6.4059E-05	-0.053262	-2.6484E-05	497.2503145705476	25.202	1.2133	25.031	24.558	25.771	-0.17078					59	28	4	0	0	0	0.87148	1	1168	1168		53.351	2.016	1	1557400			3563	4404	2068	2079	4828	4828					-0.010359234028896935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.7580871582031	2	445.758352	889.502152	0.19791	8.8219E-05	-0.15694	-6.9955E-05	0.040971	1.8263E-05	445.7581470195025	51.553	1.4169	51.553	51.178	52.595	0					87	38	4	0	0	0	0.50717	3	5476	5465;5476;5488		84.916	19.112	1	4339400			3564	11022	2069	2080	4829;4830;4831	4830					0.052981061056470935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.7582702636719	2	445.758352	889.502152	-0.39401	-0.00017563	0.45304	0.00020195	0.059034	2.6315E-05	445.75839710453613	51.744	1.0259	51.596	51.3	52.326	-0.14735					70	28	4	0	0	0	0.47665	3	5488	5465;5476;5488		87.754	10.908	1	4443000			3565	11022	2069	2080	4832;4833;4834	4834					0.052981061056470935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	445.7582702636719	2	445.758352	889.502152	-0.95144	-0.00042411	1.0161	0.00045293	0.064638	2.8813E-05	445.7586398197009	51.445	0.99664	51.532	51.039	52.035	0.087009					77	27	4	0	0	0	0.4075	2	5371	5371;5383		96.19	30.387	1	3886800			3566	11022	2069	2080	4835;4836	4835					0.052981061056470935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	445.758352	889.502152	0.59714	0.00026618	-0.92424	-0.00041199	-0.3271	-0.00014581	445.7579025924383	51.507	1.2779	51.393	51.127	52.404	-0.11401	-0.11651	-0.0010022	NaN	96.19	60	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2303400			3567	11022	2069	2080							0.052981061056470935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	445.758352	889.502152	-1.5387	-0.00068589	1.0689	0.00047645	-0.46985	-0.00020944	445.7588303119596	51.797	1.1508	51.528	51.242	52.393	-0.26903	0.018283	0.00077473	NaN	96.19	60	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2482800			3568	11022	2069	2080							0.052981061056470935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	445.758352	889.502152	1.0688	0.00047642	-1.361	-0.00060668	-0.29223	-0.00013026	445.75757223325394	51.638	0.7128	51.454	51.14	51.852	-0.18404	-0.055361	-0.0013915	NaN	96.19	58	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2284900			3569	11022	2069	2080							0.052981061056470935
APYRDLPASL	10	Unmodified	_APYRDLPASL_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.79833984375	2	551.798206	1101.58186	0.30946	0.00017076	-1.0327	-0.00056985	-0.72326	-0.00039909	551.7975919884614	55.733	0.8133	55.733	55.464	56.277	0					61	22	4	0	0	0	0.55987	2	6177	6177;6190		81.525	8.6458	1	3414400			3570	3135	2070	2081	4837;4838	4837					0.035131279889810685
APYRDLPASL	10	Unmodified	_APYRDLPASL_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.7980346679688	2	551.798206	1101.58186	-0.47777	-0.00026363	-0.20745	-0.00011447	-0.68522	-0.0003781	551.798036535745	55.848	1.0235	55.692	55.26	56.284	-0.15601					80	27	4	0	0	0	0.40114	1	6166	6166		98.582	26.705	1	3124900			3571	3135	2070	2081	4839	4839					0.035131279889810685
APYRDLPASL	10	Unmodified	_APYRDLPASL_					0	0	0		ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.7984619140625	2	551.798206	1101.58186	-1.1723	-0.00064687	0.52027	0.00028709	-0.65202	-0.00035978	551.798444254382	55.5	0.85011	55.598	55.183	56.033	0.098015					69	22	4	0	0	0	0.62511	1	6067	6067		74.165	2.2875	1	2937900			3572	3135	2070	2081	4840	4840					0.035131279889810685
APYSRPKQL	9	Unmodified	_APYSRPKQL_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.3003540039062	2	530.300916	1058.58728	-1.7921	-0.00095036	1.0651	0.00056483	-0.727	-0.00038553	530.3013853418468	30.338	1.1487	30.338	29.855	31.003	0					67	27	4	0	0	0	0.057894	3	1923	1923;1932;1944		125.81	49.04	1	3125600			3573	9259	2071	2082	4841;4842;4843	4841					0.06032851571490028
APYSRPKQL	9	Unmodified	_APYSRPKQL_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.3007202148438	2	530.300916	1058.58728	-0.87666	-0.00046489	0.30945	0.0001641	-0.5672	-0.00030079	530.3010104602006	30.257	1.2788	30.266	29.717	30.996	0.0086708					76	30	4	0	0	0	0.057894	2	1904	1904;1915		125.81	38.06	1	3243200			3574	9259	2071	2082	4844;4845	4844					0.06032851571490028
APYSRPKQL	9	Unmodified	_APYSRPKQL_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.3004760742188	2	530.300916	1058.58728	-1.2014	-0.00063709	0.57913	0.00030711	-0.62225	-0.00032998	530.3011536360962	29.909	1.2687	29.987	29.527	30.796	0.078344					78	30	4	0	0	0	0.033448	3	1829	1817;1829;1842		138.83	51.071	1	3587200			3575	9259	2071	2082	4846;4847;4848	4847					0.06032851571490028
AQADKERR	8	Unmodified	_AQADKERR_					0	0	0		ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.77691650390625	2	487.262322	972.510091	-1.1467	-0.00055875	-4.3756	-0.0021321	-5.5223	-0.0026908	487.2608907364026	37.677	0.54797	37.595	37.469	38.017	-0.082512					28	15	3	0	0	0	0.027866	1	3099	3099		79.713	5.4575	1	263520			3576	8886	2072	2083	4849	4849					0.022736333551392818
AQAEAEKI	8	Unmodified	_AQAEAEKI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.2301330566406	2	430.229625	858.444697	-0.43636	-0.00018774	2.6202	0.0011273	2.1838	0.00093954	430.23057766107627	26.153	0.7541	26.13	25.651	26.405	-0.023088					54	17	4	0	0	0	0.55513	1	1306	1306		80.455	6.1996	1	1552000			3577	4623	2073	2084	4850	4850					0.009812191094397349
AQAGALLQV	9	Unmodified	_AQAGALLQV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.7558898925781	2	435.75581	869.497067	1.1103	0.0004838	-1.4304	-0.00062329	-0.3201	-0.00013948	435.75513751948904	63.544	1.1878	63.544	63.196	64.384	0					87	32	5	0	0	0	0.028071	4	7422	7422;7433;7445;7457		143.11	0.087526	1	12739000			3578	4006	2074	2085	4851;4852;4853;4854	4851					0.0570980224304094
AQAGALLQV	9	Unmodified	_AQAGALLQV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.7562561035156	2	435.75581	869.497067	0.26326	0.00011472	-0.35324	-0.00015393	-0.08998	-3.9209E-05	435.7556352659727	63.82	0.72013	63.568	63.192	63.912	-0.25141					66	19	4	0	0	0	0.028071	4	7423	7423;7434;7446;7459		143.11	0.087526	1	14190000			3579	4006	2074	2085	4855;4856;4857;4858	4855					0.0570980224304094
AQAGALLQV	9	Unmodified	_AQAGALLQV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.75604248046875	2	435.75581	869.497067	1.9361	0.00084367	-2.1868	-0.0009529	-0.25068	-0.00010923	435.7547438503769	63.509	1.1481	63.563	63.233	64.381	0.054104					76	31	5	0	0	0	0.028071	3	7334	7334;7343;7367		143.11	0.087526	1	13291000			3580	4006	2074	2085	4859;4860;4861	4859					0.0570980224304094
AQAGVQVK	8	Unmodified	_AQAGVQVK_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.P800Lfs*30|1|0.21|ENSG00000068024|chr2:239087589-239087589|G/-|frameshift_variant;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4	ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8875732421875	2	400.734877	799.455202	2.0954	0.00083969	-1.8554	-0.00074353	0.23996	9.6161E-05	400.7339334895033	30.547	0.70576	30.621	30.254	30.96	0.074314					25	16	2	0	0	0	0.027866	1	1885	1885		40.573	8.6178	1	63844			3581	1374;14726	2075	2086	4862	4862					0.04745246554523419
AQAHEKALL	9	Unmodified	_AQAHEKALL_					0	0	0			REV__ENSG00000173976|ENST00000555633|RAX2	REV__ENSG00000173976|ENST00000555633|RAX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2580871582031	2	490.779816	979.545079	0.44953	0.00022062	3.5771	0.0017556	4.0267	0.0019762	490.7812672196053	74.815	0.60426	74.815	74.551	75.155	0					21	14	2	0	0	0	0.024487	1	9215	9215		24.203	11.996	1	185040	+		3582	26824	2076	2087	4863	4863					0.054488761630864246
AQAIYASVL	9	Unmodified	_AQAIYASVL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.2626647949219	2	468.263468	934.512382	-0.20413	-9.5586E-05	-0.027243	-1.2757E-05	-0.23137	-0.00010834	468.2632989720304	43.521	1.1962	43.408	43.071	44.267	-0.11253					58	32	3	0	0	0	0.6504	1	3990	3990		49.442	4.9105	1	5788200			3583	1037	2077	2088	4864	4864					0.04250669040231969
AQAKEEAL	8	Unmodified	_AQAKEEAL_					0	0	0			REV__ENST00000589308.1_1_19:36606815-36612715:+|nuORF	REV__ENST00000589308.1_1_19:36606815-36612715:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.2309265136719	2	430.229625	858.444697	-0.43166	-0.00018571	2.239	0.00096326	1.8073	0.00077755	430.2305479846648	26.147	0.79497	26.147	25.652	26.447	0					50	18	4	0	0	0	0.68164	1	1298	1298		68.787	2.3575	1	1566500	+		3584	21504	2078	2089	4865	4865					0.009812191094169975
AQAKIEKI	8	Unmodified	_AQAKIEKI_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000488147.1_1_1:17367-18318:-|nuORF;ENST00000400706.3_1_12:87289-88257:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF;ENST00000568710.1_1_16:67585-84971:-|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.77947998046875	2	450.779285	899.544017	-0.35681	-0.00016084	0.7028	0.00031681	0.34599	0.00015597	450.7794122277942	25.91	0.51291	25.887	25.651	26.164	-0.023088					27	11	3	0	0	0	0.53593	1	1270	1270		82.241	13.148	1	542280			3585	9040	2079	2090	4866	4866					0.09022661794188025
AQALAKLTI	9	Unmodified	_AQALAKLTI_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91493362-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.79510498046875	2	464.794935	927.575317	0.67803	0.00031514	-0.5313	-0.00024695	0.14673	6.8198E-05	464.79452087545405	55.493	0.78312	55.493	55.216	55.999	0					53	21	4	0	0	0	0.014034	2	6130	6130;6140		166.68	44.503	1	3578400			3586	5425	2080	2091	4867;4868	4867					0.10863234828264012
AQALAKLTI	9	Unmodified	_AQALAKLTI_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91493362-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.79522705078125	2	464.794935	927.575317	-0.0090594	-4.2108E-06	0.12596	5.8547E-05	0.1169	5.4336E-05	464.79482356761906	55.566	0.90134	55.41	55.093	55.995	-0.15601					54	24	4	0	0	0	0.016758	2	6113	6113;6123		153.04	36.132	1	2685000			3587	5425	2080	2091	4869;4870	4869					0.10863234828264012
AQALAKLTI	9	Unmodified	_AQALAKLTI_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91493362-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7957458496094	2	464.794935	927.575317	-0.32318	-0.00015021	0.59616	0.00027709	0.27298	0.00012688	464.7950427801751	55.288	0.84885	55.386	55.083	55.931	0.098011					55	22	4	0	0	0	0.03201	2	6017	6017;6029		139.97	35.224	1	2970000			3588	5425	2080	2091	4871;4872	4871					0.10863234828264012
AQALCRLTV	9	Unmodified	_AQALCRLTV_					0	0	0			REV__ENSG00000204033|ENST00000372113|LRIT2	REV__ENSG00000204033|ENST00000372113|LRIT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.77471923828125	2	487.776219	973.537886	-1.1989	-0.00058481	-1.8126	-0.00088414	-3.0115	-0.001469	487.7749301572532	55.763	0.95157	55.861	55.294	56.246	0.098015					53	25	4	0	0	0	0.39228	1	6128	6128		66.429	0.96389	1	5196600	+		3589	28563	2081	2092	4873	4873					0.05005820291000873
AQALGQAAQP	10	Unmodified	_AQALGQAAQP_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7723388671875	2	477.753798	953.493044	-0.079507	-3.7985E-05	-0.0048382	-2.3115E-06	-0.084345	-4.0296E-05	477.75377713842715	45.028	1.1314	45.072	44.619	45.751	0.04388					70	32	3	0	0	0	0.03519	1	4234	4234		40.778	8.8233	1	1478900			3590	10567	2082	2093	4874	4874					0.014437127493124535
AQANKEAKL	9	Unmodified	_AQANKEAKL_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.77691650390625	2	486.777274	971.539994	-1.5006	-0.00073048	0.5819	0.00028326	-0.91874	-0.00044722	486.7773524053946	37.917	0.88795	37.917	37.667	38.555	0					64	25	4	0	0	0	0.094442	1	3129	3129		112.41	19.268	1	3721200	+		3591	21702	2083	2094	4875	4875					0.053085723004642205
AQANKEAKL	9	Unmodified	_AQANKEAKL_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.77691650390625	2	486.777274	971.539994	-1.2219	-0.00059479	0.30921	0.00015051	-0.91269	-0.00044427	486.7772375163445	37.823	0.90503	37.74	37.469	38.374	-0.082512					64	25	4	0	0	0	0.03666	1	3099	3099		136.27	8.8064	1	3376500	+		3592	21702	2083	2094	4876	4876					0.053085723004642205
AQANSKLQL	9	Unmodified	_AQANSKLQL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7769470214844	2	486.777274	971.539994	-1.5006	-0.00073048	0.5819	0.00028326	-0.91874	-0.00044722	486.7773524053946	37.917	0.88795	37.917	37.667	38.555	0					64	25	4	0	0	0	0.03201	1	3140	3140		139.97	21.227	1	3721200			3593	1954	2084	2095	4877	4877					0.053085723004642205
AQANSKLQL	9	Unmodified	_AQANSKLQL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7767639160156	2	486.777274	971.539994	-1.2219	-0.00059479	0.30921	0.00015051	-0.91269	-0.00044427	486.7772375163445	37.823	0.90503	37.74	37.469	38.374	-0.082512					64	25	4	0	0	0	0.12914	1	3118	3118		104.06	8.2416	1	3376500			3594	1954	2084	2095	4878	4878					0.053085723004642205
AQANSKLQL	9	Unmodified	_AQANSKLQL_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7767028808594	2	486.777274	971.539994	-1.5454	-0.00075224	0.44911	0.00021862	-1.0962	-0.00053362	486.77735856743226	37.942	0.93954	37.969	37.672	38.612	0.027275					63	26	4	0	0	0	0.086035	1	3092	3092		115.49	3.0831	1	3116900			3595	1954	2084	2095	4879	4879					0.053085723004642205
AQAPDLQRV	9	Unmodified	_AQAPDLQRV_					0	0	0		nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-2|NOP2	nc|ENSG00000111641|P46087-2|NOP2	MSMS	OPSCC_39_ClassI_Rep-2	2	499.27490234375	2	499.274898	996.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.459	1	40.347	39.847	40.847	-0.11223								0	0	0	0.47328	1	3543	3543		56.434	14.038	1				3596	3128	2085	2096	4880	4880					0.03683688157718734
AQAPPTAQL	9	Unmodified	_AQAPPTAQL_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.74542236328125	2	448.745442	895.476331	-0.014734	-6.6116E-06	-0.2126	-9.5405E-05	-0.22734	-0.00010202	448.7453154098519	47.281	1.6639	47.281	46.852	48.516	0					143	48	5	0	0	0	0.008678	6	4723	4700;4712;4723;4735;4748;4760		268.28	153.76	1	12405000			3597	3688	2086	2097	4881;4882;4883;4884;4885;4886	4883					0.024412118633676982
AQAPPTAQL	9	Unmodified	_AQAPPTAQL_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.74505615234375	2	448.745442	895.476331	0.44084	0.00019783	-0.71056	-0.00031886	-0.26972	-0.00012103	448.7450961637934	47.435	1.7289	47.282	46.776	48.505	-0.153					135	49	4	0	0	0	0.0085723	7	4768	4697;4705;4717;4729;4741;4754;4768		251.33	141.53	1	12108000			3598	3688	2086	2097	4887;4888;4889;4890;4891;4892;4893	4893					0.024412118633676982
AQAPPTAQL	9	Unmodified	_AQAPPTAQL_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7450866699219	2	448.745442	895.476331	-0.67517	-0.00030298	0.46732	0.00020971	-0.20785	-9.3271E-05	448.74559452614966	47.2	1.7035	47.26	46.842	48.546	0.059097					124	48	4	0	0	0	0.008678	7	4648	4628;4637;4648;4660;4672;4685;4700		247.94	136.29	1	11941000			3599	3688	2086	2097	4894;4895;4896;4897;4898;4899;4900	4896					0.024412118633676982
AQAPSSTEI	9	Unmodified	_AQAPSSTEI_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2246398925781	2	452.224539	902.434526	-0.61435	-0.00027782	0.97941	0.00044291	0.36506	0.00016509	452.22480045540914	40.247	0.78857	40.27	39.942	40.73	0.023003					51	21	4	0	0	0	0.14024	2	3475	3463;3475		101.6	27.346	1	3073600			3600	9957	2087	2098	4901;4902	4902					-0.020593886158053465
AQARRGGRP	9	Unmodified	_AQARRGGRP_					0	0	0			REV__ENST00000221665.4_1_19:56104161-56104986:-|nuORF	REV__ENST00000221665.4_1_19:56104161-56104986:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2879638671875	2	484.778474	967.542394	-0.32696	-0.0001585	3.9154	0.0018981	3.5884	0.0017396	484.7799094711379	42.527	0.35686	42.553	42.323	42.68	0.026012					13	9	2	0	0	0	0.024436	1	3853	3853		47.916	10.756	1	564780	+		3601	29348	2088	2099	4903	4903					0.05732465548805976
AQAWRHLVC	9	Unmodified	_AQAWRHLVC_					0	0	0		ENST00000490776.3_1_7:33019118-33020012:+|nuORF	ENST00000490776.3_1_7:33019118-33020012:+|nuORF	ENST00000490776.3_1_7:33019118-33020012:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2957153320312	2	542.27946	1082.54437	-0.33456	-0.00018143	-3.5051	-0.0019008	-3.8397	-0.0020822	542.2774149691716	18.225	0.44318	18.094	17.908	18.352	-0.13147					9	8	2	0	0	0	0.024487	1	271	271		40.573	10.069	1	19512			3602	15440	2089	2100	4904	4904					0.0063975824239150825
AQCYLLQTAM	10	Unmodified	_AQCYLLQTAM_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.8226928710938	2	571.272652	1140.53075	-1.5379	-0.00087857	0.90117	0.00051481	-0.63674	-0.00036375	571.273323108892	51.784	0.67196	51.871	51.644	52.316	0.087006					30	17	3	0	0	0	0.03519	1	5486	5486		32.812	3.6629	1	210910			3603	1224	2090	2101	4905	4905					-0.03389280371720815
AQDYDSDFG	9	Unmodified	_AQDYDSDFG_					0	0	0			REV__nc|ENSG00000116062|P52701-4|MSH6	REV__nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.28436279296875	2	509.193436	1016.37232	-0.73714	-0.00037535	-0.71558	-0.00036437	-1.4527	-0.00073971	509.1930159098515	46.47	0.28703	46.268	46.119	46.406	-0.20226					12	7	2	0	0	0	0.024495	1	4461	4461		26.693	4.733	1	96276	+		3604	22255	2091	2102	4906	4906					-0.13521159754793644
AQELSYCPHN	10	Unmodified	_AQELSYCPHN_					0	0	0			REV__nc|ENSG00000122705|P09496-4|CLTA	REV__nc|ENSG00000122705|P09496-4|CLTA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.2593994140625	2	581.253305	1160.49206	-1.1004	-0.00063959	3.8876	0.0022597	2.7872	0.0016201	581.757637366334	42.736	0.45121	42.504	42.273	42.725	-0.23186					17	11	2	0	0	0	0.03519	1	3859	3859		16.007	2.5527	1	80060	+		3605	36624	2092	2103	4907	4907					-0.0817686968189264
AQESPHAWEV	10	Unmodified	_AQESPHAWEV_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	577.7966918945312	2	577.26727	1152.51999	-0.1947	-0.00011239	-2.4705	-0.0014261	-2.6652	-0.0015385	577.2651849777864	42.724	0.84599	42.585	42.075	42.921	-0.13929					34	23	3	0	0	0	0.03519	1	3935	3935		25.574	3.6142	1	145540	+		3606	26149	2093	2104	4908	4908					-0.050172234301498975
AQESPLFNN	9	Unmodified	_AQESPLFNN_					0	0	0		ENST00000591584.1_1_17:40925493-40926039:+|nuORF;ENST00000589219.1_1_17:40925493-40926767:+|nuORF;ENSG00000131475|ENST00000253794|VPS25	ENST00000591584.1_1_17:40925493-40926039:+|nuORF	ENST00000591584.1_1_17:40925493-40926039:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2739562988281	2	510.243264	1018.47197	-0.16742	-8.5426E-05	-3.9884	-0.0020351	-4.1558	-0.0021205	510.2411465156759	90.537	0.54749	90.52	90.276	90.823	-0.016716					19	12	2	0	0	0	0.024427	1	11445	11445		34.173	0	1	114200			3607	17358	2094	2105	4909	4909					-0.036522973501973865
AQESPLFNN	9	Unmodified	_AQESPLFNN_					0	0	0		ENST00000591584.1_1_17:40925493-40926039:+|nuORF;ENST00000589219.1_1_17:40925493-40926767:+|nuORF;ENSG00000131475|ENST00000253794|VPS25	ENST00000591584.1_1_17:40925493-40926039:+|nuORF	ENST00000591584.1_1_17:40925493-40926039:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.27392578125	2	510.243264	1018.47197	0.076696	3.9133E-05	2.5806	0.0013167	2.6573	0.0013559	510.2449693085526	90.626	0.29073	90.637	90.534	90.825	0.011276					10	6	3	0	0	0	0.024374	1	11405	11405		40.778	3.6191	1	81296			3608	17358	2094	2105	4910	4910					-0.036522973501973865
AQEVRKENP	9	Unmodified	_AQEVRKENP_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3317260742188	2	535.783087	1069.55162	-0.35335	-0.00018932	4.0107	0.0021488	3.6573	0.0019595	535.7856129061656	46.95	0.41834	46.68	46.49	46.908	-0.26939					15	11	2	0	0	0	0.024427	1	4540	4540		34.173	0	1	326490			3609	1995	2095	2106	4911	4911					0.01962769323813518
AQFEHTILL	9	Unmodified	_AQFEHTILL_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2957763671875	2	536.295299	1070.57605	-0.9798	-0.00052546	0.32722	0.00017549	-0.65258	-0.00034998	536.2954828197358	63.106	0.87074	63.106	62.651	63.522	0					68	22	4	0	0	0	0.2508	3	7362	7350;7362;7375		82.241	23.459	1	16704000			3610	3088	2096	2107	4912;4913;4914	4913					0.04358029477339187
AQFEHTILL	9	Unmodified	_AQFEHTILL_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2972412109375	2	536.295299	1070.57605	-0.51751	-0.00027754	0.33736	0.00018093	-0.18015	-9.6614E-05	536.2954938156997	63.323	1.7833	63.072	62.683	64.466	-0.25141					92	47	4	0	0	0	0.34489	1	7356	7356		69.628	12.907	1	13005000			3611	3088	2096	2107	4915	4915					0.04358029477339187
AQFEHTILL	9	Unmodified	_AQFEHTILL_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.296630859375	2	536.295299	1070.57605	0.44044	0.00023621	-0.75584	-0.00040535	-0.3154	-0.00016915	536.2948844185134	63.068	1.7	63.122	62.719	64.419	0.054104					91	44	4	0	0	0	0.42604	1	7267	7267		64.207	5.4253	1	13351000			3612	3088	2096	2107	4916	4916					0.04358029477339187
AQFGEPDVL	9	Unmodified	_AQFGEPDVL_					0	0	0			REV__ENSG00000112624|ENST00000314073|BICRAL	REV__ENSG00000112624|ENST00000314073|BICRAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.270263671875	2	488.242732	974.470912	0.023399	1.1424E-05	-3.909	-0.0019085	-3.8856	-0.0018971	488.2407237231388	23.308	0.49216	23.106	22.826	23.318	-0.20193					18	10	3	0	0	0	0.024477	1	876	876		20.947	0	1	78680	+		3613	22016	2097	2108	4917	4917					-0.017345117191098325
AQFGYYFRV	9	Unmodified	_AQFGYYFRV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.7882080078125	2	575.787641	1149.56073	-1.2597	-0.00072531	0.96063	0.00055312	-0.29905	-0.00017219	575.7880534798957	68.886	0.82252	68.886	68.56	69.383	0					67	21	4	0	0	0	0.16468	2	8275	8275;8285		96.19	39.558	1	3431200			3614	2014	2098	2109	4918;4919	4918					-0.00806837319873921
AQFGYYFRV	9	Unmodified	_AQFGYYFRV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.78759765625	2	575.787641	1149.56073	0.33754	0.00019435	-0.67257	-0.00038726	-0.33503	-0.00019291	575.7871217712795	69.242	1.0379	68.949	68.595	69.633	-0.29292					69	26	4	0	0	0	0.082191	2	8298	8289;8298		116.9	40.129	1	3488700			3615	2014	2098	2109	4920;4921	4921					-0.00806837319873921
AQFGYYFRV	9	Unmodified	_AQFGYYFRV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.7879638671875	2	575.787641	1149.56073	-0.61135	-0.00035201	0.40928	0.00023566	-0.20207	-0.00011635	575.7877394149299	68.974	1.1511	68.989	68.683	69.834	0.015129					77	29	4	0	0	0	0.082191	2	8215	8205;8215		116.9	48.025	1	3572700			3616	2014	2098	2109	4922;4923	4923					-0.00806837319873921
AQFIPGQQP	9	Unmodified	_AQFIPGQQP_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.30340576171875	2	493.258717	984.50288	-0.2464	-0.00012154	-4.2362	-0.0020896	-4.4826	-0.0022111	493.25648987067757	31.436	0.73902	31.447	31.084	31.823	0.011799					41	17	3	0	0	0	0.024381	1	2132	2132		45.952	13.997	1	910700			3617	7438	2099	2110	4924	4924					0.010009007547068904
AQFIPGQQP	9	Unmodified	_AQFIPGQQP_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.258717	984.50288	-0.32378	-0.00015971	-4.3906	-0.0021657	-4.7144	-0.0023254	493.25648837968885	31.117	0.65494	31.186	30.912	31.567	0.068962	-0.094349	-0.00015044	NaN	29.15	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	831410			3618	7438	2099	2110							0.010009007547068904
AQFIPGQQP	9	Unmodified	_AQFIPGQQP_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.258717	984.50288	-0.34003	-0.00016772	-3.8175	-0.001883	-4.1575	-0.0020507	493.2566166982446	31.168	0.11845	30.983	30.905	31.023	-0.18503	-0.29686	0.00041497	NaN	29.15	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28280			3619	7438	2099	2110							0.010009007547068904
AQFPSSGRFW	10	Unmodified	_AQFPSSGRFW_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;nc|ENSG00000176102|Q12996-2|CSTF3;ENST00000526480.1_1_11:33157665-33182871:-|nuORF	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	591.7877197265625	2	591.788173	1181.56179	-0.70918	-0.00041969	0.48169	0.00028506	-0.22749	-0.00013463	591.7883099613199	63.828	1.3229	63.601	63.174	64.497	-0.22773					89	33	3	0	0	0	0.2261	1	7241	7241		117.81	50.849	1	1615400			3620	8611	2100	2111	4925	4925					-0.02172622950956793
AQFPSSGRFW	10	Unmodified	_AQFPSSGRFW_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;nc|ENSG00000176102|Q12996-2|CSTF3;ENST00000526480.1_1_11:33157665-33182871:-|nuORF	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	591.788173	1181.56179	-0.81515	-0.0004824	0.67917	0.00040192	-0.13598	-8.0474E-05	591.7884030712672	63.806	1.5189	63.613	63.109	64.627	-0.19243	-0.013258	0.00020407	NaN	117.81	90	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1748800			3621	8611	2100	2111							-0.02172622950956793
AQFPSSGRFW	10	Unmodified	_AQFPSSGRFW_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;nc|ENSG00000176102|Q12996-2|CSTF3;ENST00000526480.1_1_11:33157665-33182871:-|nuORF	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	591.788173	1181.56179	-0.51988	-0.00030766	0.30123	0.00017827	-0.21864	-0.00012939	591.7881939295058	63.924	1.3405	63.666	63.239	64.579	-0.25824	0.03904	-0.00024324	NaN	117.81	86	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1768200			3622	8611	2100	2111							-0.02172622950956793
AQFTLEHLL	9	Unmodified	_AQFTLEHLL_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2959594726562	2	536.295299	1070.57605	-0.51751	-0.00027754	0.33736	0.00018093	-0.18015	-9.6614E-05	536.2954938156997	63.323	1.7833	63.072	62.683	64.466	-0.25141					92	47	4	0	0	0	0.53979	1	7369	7369		56.721	1.2168	1	13005000	+		3623	20576	2101	2112	4926	4926					0.04358029477339187
AQFTTALRL	9	Unmodified	_AQFTTALRL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.79608154296875	2	510.795466	1019.57638	-0.68572	-0.00035026	2.6145	0.0013355	1.9288	0.00098522	510.7953527949727	61.753	0.86369	61.753	61.216	62.08	0					56	22	4	0	0	0	0.16539	1	7169	7169		96.034	35.915	1	2261600			3624	4373	2102	2113	4927	4927					0.06737449197169099
AQFTTALRL	9	Unmodified	_AQFTTALRL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7956848144531	2	510.795466	1019.57638	-0.57031	-0.00029131	2.3918	0.0012217	1.8215	0.0009304	510.7952358160962	61.679	0.85823	61.75	61.203	62.061	0.071125					55	22	4	0	0	0	0.11727	1	7067	7067		106.68	47.901	1	2443400			3625	4373	2102	2113	4928	4928					0.06737449197169099
AQGARRPT	8	Unmodified	_AQGARRPT_					0	0	0		ENST00000219334.9_1_16:68405177-68405606:-|nuORF	ENST00000219334.9_1_16:68405177-68405606:-|nuORF	ENST00000219334.9_1_16:68405177-68405606:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7401428222656	2	428.741025	855.467498	-0.73419	-0.00031478	-2.0812	-0.0008923	-2.8154	-0.0012071	428.7397064657695	22.39	0.52869	22.464	22.125	22.653	0.073954					15	10	2	0	0	0	0.027866	1	704	704		31.955	10.253	1	14231			3626	11171	2103	2114	4929	4929					0.03398283017554604
AQGGVLPNI	9	Unmodified	_AQGGVLPNI_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14;ENST00000454426.1_1_6:25882256-25882391:-|nuORF	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.74810791015625	2	434.747985	867.481417	-0.39117	-0.00017006	0.26586	0.00011558	-0.12531	-5.4476E-05	434.74823731018006	65.55	1.4355	65.278	64.786	66.221	-0.27283					145	38	5	0	0	0	0.072054	5	7769	7721;7733;7745;7769;7796		120.62	15.874	1	100810000			3627	9323	2104	2115	4930;4931;4932;4933;4934	4933					0.0423751572599258
AQGGVLPNI	9	Unmodified	_AQGGVLPNI_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14;ENST00000454426.1_1_6:25882256-25882391:-|nuORF	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7481994628906	2	434.747985	867.481417	0.16778	7.2943E-05	-0.27376	-0.00011901	-0.10597	-4.6072E-05	434.7479913700864	65.234	1.4639	65.272	64.78	66.244	0.037384					144	39	5	0	0	0	0.015925	4	7650	7626;7650;7662;7698		157.21	22.398	1	104280000			3628	9323	2104	2115	4935;4936;4937;4938	4936					0.0423751572599258
AQGKLNLHDL	10	Unmodified	_AQGKLNLHDL_					0	0	0			REV__ZBTB39|p.L533Pfs*31|1|0.12|ENSG00000166860|chr12:57003312-57003322|CGTCTTCCAGA/-|frameshift_variant	REV__ZBTB39|p.L533Pfs*31|1|0.12|ENSG00000166860|chr12:57003312-57003322|CGTCTTCCAGA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.8086547851562	2	554.809105	1107.60366	-0.011727	-6.5061E-06	-1.121	-0.00062193	-1.1327	-0.00062844	554.8084457235108	45.953	0.62358	45.857	45.564	46.187	-0.096649					48	16	4	0	0	0	0.77808	1	4381	4381		62.107	3.3255	1	10141000	+		3629	26067	2105	2116	4939	4939					0.0541593273756007
AQGKVKLVV	9	Unmodified	_AQGKVKLVV_					0	0	0		ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.3109436035156	2	471.310752	940.606951	0.087303	4.1147E-05	-1.0819	-0.00050989	-0.99456	-0.00046874	471.3105871218671	34.426	0.81271	34.426	34.168	34.981	0					51	20	5	0	0	0	0.25032	2	2577	2563;2577		82.305	5.4925	1	3863600			3630	6059	2106	2117	4940;4941	4941					0.13427227582246815
AQGKVKLVV	9	Unmodified	_AQGKVKLVV_					0	0	0		ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.3106994628906	2	471.310752	940.606951	0.34289	0.00016161	-2.1973	-0.0010356	-1.8544	-0.00087401	471.31043553728017	34.288	0.93396	34.284	33.988	34.922	-0.0045624					58	23	5	0	0	0	0.35646	1	2530	2530		68.787	2.9837	1	3376000			3631	6059	2106	2117	4942	4942					0.13427227582246815
AQGKVKLVV	9	Unmodified	_AQGKVKLVV_					0	0	0		ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.31072998046875	2	471.310752	940.606951	-0.36789	-0.00017339	-0.61035	-0.00028766	-0.97823	-0.00046105	471.3108626247936	34.302	0.97263	34.352	34.047	35.02	0.050255					57	24	4	0	0	0	0.18915	2	2490	2490;2502		90.777	32.965	1	3163500			3632	6059	2106	2117	4943;4944	4943					0.13427227582246815
AQGNTEVIHTG	11	Unmodified	_AQGNTEVIHTG_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845;nc|ENSG00000293246|Q8N8H1|ZNF321P;ZNF525|p.F448Pfs*6|1|0.08|ENSG00000203326|chr19:53381920-53381936|CTTCAGTCAGGAGTTAT/-|frameshift_variant;ENSG00000203326|ENST00000474037|ZNF525	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.7720947265625	2	563.778002	1125.54145	0.41575	0.00023439	-0.88756	-0.00050039	-0.47181	-0.000266	564.2789430175657	87.493	0.58029	87.515	87.178	87.759	0.021263					19	13	2	0	0	0	0.024731	1	10946	10946		42.864	11.334	1	94464			3633	10523	2107	2118	4945	4945					-0.016298384014362455
AQGQDGKIL	9	Unmodified	_AQGQDGKIL_					0	0	0			REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.25665283203125	2	465.256174	928.497795	1.0038	0.00046704	-1.0929	-0.00050849	-0.089099	-4.1454E-05	465.25569371198	59.102	0.80449	59.188	58.813	59.617	0.085682					67	21	4	0	0	0	0.39228	1	6669	6669		66.429	0	1	14951000	+		3634	19510	2108	2119	4946	4946					0.03068596892092046
AQGSPHNI	8	Unmodified	_AQGSPHNI_					0	0	0		METTL22|p.D167N|1|0.19|ENSG00000067365|chr16:8629095-8629095|G/A|missense_variant	METTL22|p.D167N|1|0.19|ENSG00000067365|chr16:8629095-8629095|G/A|missense_variant	METTL22|p.D167N|1|0.19|ENSG00000067365|chr16:8629095-8629095|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.8876037597656	2	412.206484	822.398415	-0.73818	-0.00030428	-0.43396	-0.00017888	-1.1721	-0.00048316	412.20663050090866	27.675	0.16752	27.507	27.402	27.57	-0.16816					7	3	3	0	0	0	0.027866	1	1537	1537		21.96	7.2958	1	16420			3635	17975	2109	2120	4947	4947					-0.01988801001994034
AQHFWHMV	8	Unmodified	_AQHFWHMV_					0	0	0			REV__ENSG00000198704|ENST00000361902|GPX6	REV__ENSG00000198704|ENST00000361902|GPX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.779541015625	2	528.247629	1054.48071	-0.097743	-5.1633E-05	0.37034	0.00019563	0.27259	0.000144	528.2479171114583	81.946	0.93172	81.753	81.213	82.144	-0.19333					30	21	2	0	0	0	0.027866	1	9901	9901		35.201	9.7505	1	112880	+		3636	28451	2110	2121	4948	4948					-0.044356021947123736
AQHPDAKL	8	Unmodified	_AQHPDAKL_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2480163574219	2	440.237784	878.461016	0.56382	0.00024822	-0.1166	-5.133E-05	0.44723	0.00019689	440.23749622299124	33.409	0.85499	33.465	32.877	33.732	0.056572					33	22	2	0	0	0	0.027866	1	2365	2365		31.955	3.7006	1	196450			3637	6647	2111	2122	4949	4949					0.016923450661806783
AQHPDAKL	8	Unmodified	_AQHPDAKL_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	440.237784	878.461016	-0.42334	-0.00018637	1.2587	0.00055412	0.83535	0.00036775	440.23826321237675	33.706	0.51899	33.475	33.114	33.633	-0.23107	-0.033412	0.00067351	NaN	31.955	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98254			3638	6647	2111	2122							0.016923450661806783
AQHPDAKL	8	Unmodified	_AQHPDAKL_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	440.237784	878.461016	-0.72854	-0.00032073	1.3324	0.00058656	0.60384	0.00026583	440.2381446035525	33.601	0.71384	33.436	33.077	33.791	-0.16565	-0.072386	0.00073839	NaN	31.955	20	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94415			3639	6647	2111	2122							0.016923450661806783
AQHPNIVTV	9	Unmodified	_AQHPNIVTV_					0	0	0		ENST00000492390.5_1_1:1636243-1639660:-|nuORF;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;ENST00000468800.5_1_1:1635923-1638967:-|nuORF;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF;ENST00000474916.1_1_1:1636243-1639664:-|nuORF;nc|ENSG00000248333|P21127|CDK11B	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7720031738281	2	489.771991	977.529429	0.16592	8.1263E-05	-0.85231	-0.00041744	-0.68639	-0.00033617	489.77173251983817	42.661	0.91825	42.661	42.12	43.038	0					87	25	4	0	0	0	0.013333	2	3913	3901;3913		176.41	94.106	1	12453000			3640	834	2112	2123	4950;4951	4951					0.039765896460380645
AQHPNIVTV	9	Unmodified	_AQHPNIVTV_					0	0	0		ENST00000492390.5_1_1:1636243-1639660:-|nuORF;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;ENST00000468800.5_1_1:1635923-1638967:-|nuORF;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF;ENST00000474916.1_1_1:1636243-1639664:-|nuORF;nc|ENSG00000248333|P21127|CDK11B	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.77191162109375	2	489.771991	977.529429	-0.027489	-1.3463E-05	-0.63279	-0.00030992	-0.66028	-0.00032339	489.7718343249997	42.854	1.4389	42.715	41.882	43.321	-0.13929					105	40	4	0	0	0	0.014988	2	3916	3916;3927		161.9	81.959	1	12609000			3641	834	2112	2123	4952;4953	4952					0.039765896460380645
AQHPNIVTV	9	Unmodified	_AQHPNIVTV_					0	0	0		ENST00000492390.5_1_1:1636243-1639660:-|nuORF;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;ENST00000468800.5_1_1:1635923-1638967:-|nuORF;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;ENST00000598846.1_1_1:1635046-1639660:-|nuORF;ENST00000474916.1_1_1:1636243-1639664:-|nuORF;nc|ENSG00000248333|P21127|CDK11B	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7720947265625	2	489.771991	977.529429	-0.10626	-5.2044E-05	-0.52528	-0.00025727	-0.63154	-0.00030931	489.7718697157063	42.781	0.95881	42.807	42.152	43.111	0.026012					82	26	4	0	0	0	0.082191	2	3854	3854;3870		116.9	31.544	1	11732000			3642	834	2112	2123	4954;4955	4954					0.039765896460380645
AQHQQVRQI	9	Unmodified	_AQHQQVRQI_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000411586.1_1_1:226626563-226626776:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3042602539062	2	554.304521	1106.59449	-0.37671	-0.00020881	-0.14658	-8.1251E-05	-0.52329	-0.00029006	554.3043663368651	22.267	0.83747	22.267	21.965	22.803	0					40	17	4	0	0	0	0.11092	1	764	764		108.09	54.736	1	668700			3643	5814	2113	2124	4956	4956					0.04545584171910377
AQHQQVRQI	9	Unmodified	_AQHQQVRQI_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000411586.1_1_1:226626563-226626776:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3042602539062	2	554.304521	1106.59449	-0.62364	-0.00034569	0.081247	4.5036E-05	-0.5424	-0.00030065	554.3044580242539	22.348	0.99411	22.273	21.745	22.739	-0.075296					44	19	4	0	0	0	0.072054	2	772	760;772		120.62	61.839	1	628220			3644	5814	2113	2124	4957;4958	4958					0.04545584171910377
AQHQQVRQI	9	Unmodified	_AQHQQVRQI_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000411586.1_1_1:226626563-226626776:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3046264648438	2	554.304521	1106.59449	-1.1652	-0.00064585	0.77312	0.00042854	-0.39204	-0.00021731	554.3048677445182	22.17	0.9672	22.244	21.639	22.607	0.073954					47	17	4	0	0	0	0.096521	2	709	709;720		111.65	53.837	1	647220			3645	5814	2113	2124	4959;4960	4959					0.04545584171910377
AQHSVPLQL	9	Unmodified	_AQHSVPLQL_					0	0	0		ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD	ENSG00000102871|ENST00000345057|TRADD	ENSG00000102871|ENST00000345057|TRADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7796936035156	2	496.779816	991.545079	0.61493	0.00030549	0.070627	3.5086E-05	0.68556	0.00034057	496.7791550724687	51.266	0.61187	51.266	50.956	51.568	0					28	16	3	0	0	0	0.15366	2	5422	5411;5422		98.629	27.251	1	5475700			3646	2435	2114	2125	4961;4962	4962					0.04896876163093111
AQHSVPLQL	9	Unmodified	_AQHSVPLQL_					0	0	0		ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD	ENSG00000102871|ENST00000345057|TRADD	ENSG00000102871|ENST00000345057|TRADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.779296875	2	496.779816	991.545079	-0.49433	-0.00024557	0.96215	0.00047798	0.46782	0.0002324	496.7796425521934	51.389	0.60509	51.24	50.97	51.575	-0.14916					28	16	3	0	0	0	0.077175	2	5416	5416;5427		118.74	30.1	1	5215200			3647	2435	2114	2125	4963;4964	4963					0.04896876163093111
AQHSVPLQL	9	Unmodified	_AQHSVPLQL_					0	0	0		ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD	ENSG00000102871|ENST00000345057|TRADD	ENSG00000102871|ENST00000345057|TRADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.77984619140625	2	496.779816	991.545079	-0.82853	-0.0004116	1.4268	0.00070881	0.59828	0.00029721	496.77983553868427	51.088	0.58417	51.175	50.926	51.511	0.087006					30	15	4	0	0	0	0.14024	2	5324	5324;5335		101.6	24.827	1	4996600			3648	2435	2114	2125	4965;4966	4965					0.04896876163093111
AQHVEVESI	9	Unmodified	_AQHVEVESI_					0	0	0		WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant;ENSG00000084463|ENST00000261167|WBP11	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.2586364746094	2	506.258914	1010.50327	-0.057519	-2.9119E-05	0.25562	0.00012941	0.1981	0.00010029	506.25879968072746	41.02	1.4069	41.02	40.481	41.888	0					102	39	5	0	0	0	0.22902	2	3665	3653;3665		85.161	7.217	1	2701600			3649	1770	2115	2126	4967;4968	4968					-0.0015572431608461557
AQHVEVESI	9	Unmodified	_AQHVEVESI_					0	0	0		WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant;ENSG00000084463|ENST00000261167|WBP11	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.2587890625	2	506.258914	1010.50327	-0.026473	-1.3402E-05	-0.12875	-6.5179E-05	-0.15522	-7.8581E-05	506.25875506198133	41.177	1.2279	41.2	40.73	41.958	0.023006					77	34	3	0	0	0	0.19099	1	3625	3625		90.37	23.941	1	2633300			3650	1770	2115	2126	4969	4969					-0.0015572431608461557
AQHVEVESI	9	Unmodified	_AQHVEVESI_					0	0	0		WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant;ENSG00000084463|ENST00000261167|WBP11	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.258914	1010.50327	-0.23561	-0.00011928	-4.7527	-0.0024061	-4.9884	-0.0025254	506.2561654651612	41.244	0.19251	41.109	41.022	41.215	-0.13553	-0.022591	-0.0046032	NaN	90.37	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32635			3651	1770	2115	2126							-0.0015572431608461557
AQHVEVESI	9	Unmodified	_AQHVEVESI_					0	0	0		WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant;ENSG00000084463|ENST00000261167|WBP11	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	WBP11|p.D273Afs*34|1|0.04|ENSG00000084463|chr12:14793826-14793826|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.258914	1010.50327	-0.40505	-0.00020506	0.47551	0.00024073	0.07046	3.5671E-05	506.25947707935126	41.499	0.15608	41.271	41.159	41.315	-0.2278	0.1397	0.00069044	NaN	90.37	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36022			3652	1770	2115	2126							-0.0015572431608461557
AQIDGNLVVR	10	Unmodified	_AQIDGNLVVR_					0	0	0		CYB5R3|p.R84Q|1|0.16|ENSG00000100243|chr22:42630964-42630964|C/T|missense_variant	CYB5R3|p.R84Q|1|0.16|ENSG00000100243|chr22:42630964-42630964|C/T|missense_variant	CYB5R3|p.R84Q|1|0.16|ENSG00000100243|chr22:42630964-42630964|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.8235473632812	2	542.809105	1083.60366	0.10848	5.8885E-05	-3.4888	-0.0018937	-3.3803	-0.0018349	542.8070787420905	101.37	0.69881	101.24	101.03	101.72	-0.12576					28	15	3	0	0	0	0.03519	1	12647	12647		36.447	4.4919	1	180180			3653	612	2116	2127	4970	4970					0.06519932737569434
AQIELLQLL	9	Unmodified	_AQIELLQLL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.8206787109375	2	520.82115	1039.62775	-0.29122	-0.00015167	0.81045	0.0004221	0.51923	0.00027043	520.8214048946902	100.28	0.50852	100.28	100.07	100.57	0					26	11	4	0	0	0	0.51687	1	12836	12836		58.23	0	1	401950			3654	9307	2117	2128	4971	4971					0.10951773171245804
AQIELLQLL	9	Unmodified	_AQIELLQLL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.8216552734375	2	520.82115	1039.62775	-0.24749	-0.0001289	0.73849	0.00038462	0.49101	0.00025573	520.8213273418027	100.32	0.48414	100.33	100.1	100.58	0.010109					28	11	4	0	0	0	0.17845	1	12791	12791		93.143	13.431	1	290650			3655	9307	2117	2128	4972	4972					0.10951773171245804
AQIELLQLL	9	Unmodified	_AQIELLQLL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	520.82115	1039.62775	0.071733	3.736E-05	0.58166	0.00030294	0.65339	0.0003403	520.8212318302302	100.42	0.44234	100.41	100.14	100.58	-0.0050888	0.069987	-0.00015082	NaN	93.143	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330170			3656	9307	2117	2128							0.10951773171245804
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2585754394531	2	487.258717	972.50288	0.20912	0.0001019	-0.48901	-0.00023827	-0.27989	-0.00013638	487.25843740019224	51.305	1.0931	51.305	50.956	52.049	0					86	30	4	0	0	0	0.082191	4	5432	5420;5432;5445;5459		116.9	33.451	1	10945000			3657	7615	2118	2129	4973;4974;4975;4976	4974					0.015529007547115725
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.25872802734375	2	487.258717	972.50288	-0.60733	-0.00029593	0.15712	7.656E-05	-0.45021	-0.00021937	487.25873089002687	51.498	1.0112	51.35	51.046	52.057	-0.14735					85	28	4	0	0	0	0.12602	4	5417	5417;5425;5437;5450		104.75	35.323	1	9135300			3658	7615	2118	2129	4977;4978;4979;4980	4977					0.015529007547115725
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2586669921875	2	487.258717	972.50288	-1.3574	-0.00066142	0.9784	0.00047673	-0.37904	-0.00018469	487.2591517846095	51.159	0.99873	51.246	50.964	51.963	0.087006					91	27	4	0	0	0	0.047345	4	5340	5329;5340;5352;5366		129.68	48.117	1	7934700			3659	7615	2118	2129	4981;4982;4983;4984	4982					0.015529007547115725
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.258717	972.50288	0.59538	0.0002901	1.0588	0.0005159	1.6542	0.000806	487.2594165830178	51.534	0.64391	51.415	50.966	51.61	-0.11875	0.054942	0.00090379	NaN	129.68	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157160			3660	7615	2118	2129							0.015529007547115725
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.258717	972.50288	-1.3407	-0.00065328	0.74121	0.00036116	-0.59952	-0.00029212	487.25903719912213	51.683	0.67184	51.414	51.123	51.795	-0.26903	0.053709	0.00059431	NaN	129.68	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145070			3661	7615	2118	2129							0.015529007547115725
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.258717	972.50288	1.2151	0.00059206	-0.2377	-0.00011582	0.97738	0.00047624	487.25844952990525	51.614	0.57029	51.43	51.099	51.669	-0.18404	0.069952	-0.00035965	NaN	129.68	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192310			3662	7615	2118	2129							0.015529007547115725
AQIKPFYTV	9	Unmodified	_AQIKPFYTV_					0	0	0		ENST00000522311.1_1_8:103848756-103855898:-|nuORF;ENSG00000155096|ENST00000337198|AZIN1	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7999877929688	2	533.800217	1065.58588	-0.67122	-0.0003583	-1.1193	-0.00059748	-1.7905	-0.00095578	533.7993821602664	57.335	0.60042	57.335	57.003	57.603	0					47	15	4	0	0	0	0.091713	2	6436	6436;6448		113.41	45.918	1	3623100			3663	6453	2119	2130	4985;4986	4985					0.055712174827021954
AQIKPFYTV	9	Unmodified	_AQIKPFYTV_					0	0	0		ENST00000522311.1_1_8:103848756-103855898:-|nuORF;ENSG00000155096|ENST00000337198|AZIN1	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.800048828125	2	533.800217	1065.58588	-0.01777	-9.4858E-06	-1.724	-0.00092025	-1.7417	-0.00092973	533.7990990046823	57.485	0.75612	57.31	56.999	57.755	-0.1749					61	19	4	0	0	0	0.021872	2	6429	6429;6441		148.04	68.33	1	3133800			3664	6453	2119	2130	4987;4988	4987					0.055712174827021954
AQIKPFYTV	9	Unmodified	_AQIKPFYTV_					0	0	0		ENST00000522311.1_1_8:103848756-103855898:-|nuORF;ENSG00000155096|ENST00000337198|AZIN1	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8001708984375	2	533.800217	1065.58588	-0.75986	-0.00040561	-0.77325	-0.00041276	-1.5331	-0.00081838	533.79959014716	57.125	0.66448	57.221	56.911	57.575	0.095306					54	17	4	0	0	0	0.057894	2	6331	6331;6343		125.81	51.559	1	2827500			3665	6453	2119	2130	4989;4990	4989					0.055712174827021954
AQIKPFYTV	9	Unmodified	_AQIKPFYTV_					0	0	0		ENST00000522311.1_1_8:103848756-103855898:-|nuORF;ENSG00000155096|ENST00000337198|AZIN1	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.800217	1065.58588	-0.84326	-0.00045013	-2.7664	-0.0014767	-3.6097	-0.0019269	533.79999205016	57.78	0.27412	57.546	57.349	57.624	-0.23363	0.19326	-0.00097353	NaN	148.04	7	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62104			3666	6453	2119	2130							0.055712174827021954
AQILGPLSI	9	Unmodified	_AQILGPLSI_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.281494140625	2	456.28166	910.548768	-0.29262	-0.00013352	0.27481	0.00012539	-0.01781	-8.1265E-06	456.28164219075404	83.791	0.99094	83.791	83.309	84.3	0					48	22	3	0	0	0	0.047345	2	10479	10479;10491		129.68	18.034	1	1118200			3667	4839	2120	2131	4991;4992	4991					0.08991545936953571
AQILGPLSI	9	Unmodified	_AQILGPLSI_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2820739746094	2	456.28166	910.548768	-0.6797	-0.00031014	0.74018	0.00033773	0.06048	2.7596E-05	456.2818661219804	83.878	0.81836	83.787	83.385	84.203	-0.090454					47	18	4	0	0	0	0.015925	2	10456	10447;10456		157.21	32.614	1	1192900			3668	4839	2120	2131	4993;4994	4994					0.08991545936953571
AQILGPLSI	9	Unmodified	_AQILGPLSI_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.28173828125	2	456.28166	910.548768	-0.47363	-0.00021611	0.49328	0.00022508	0.019647	8.9644E-06	456.2817578714409	83.72	0.90754	83.746	83.384	84.292	0.026558					49	20	4	0	0	0	0.047345	2	10387	10387;10396		129.68	30.308	1	1346700			3669	4839	2120	2131	4995;4996	4995					0.08991545936953571
AQILQSDLLPI	11	Unmodified	_AQILQSDLLPI_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8555908203125	2	605.855721	1209.69689	-0.22702	-0.00013754	0.035065	2.1245E-05	-0.19195	-0.00011629	605.8555419942754	82.066	1.3776	81.837	81.395	82.773	-0.2289					85	29	5	0	0	0	0.72712	1	9872	9872		62.107	7.3311	1	2615800			3670	3124	2121	2132	4997	4997					0.10042812400138246
AQILSQRI	8	Unmodified	_AQILSQRI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.78271484375	2	464.782359	927.550165	-0.22102	-0.00010273	-0.3092	-0.00014371	-0.53022	-0.00024644	464.7820246575103	45.938	0.69488	45.938	45.613	46.308	0					49	19	4	0	0	0	0.12938	2	4503	4503;4516		152.47	31.85	1	3007300			3671	1175	2122	2133	4998;4999	4998					0.08349180025709302
AQILSQRI	8	Unmodified	_AQILSQRI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7823791503906	2	464.782359	927.550165	-0.82514	-0.00038351	0.16001	7.4371E-05	-0.66512	-0.00030914	464.7821913789602	46.036	0.90276	45.885	45.578	46.481	-0.15156					57	25	4	0	0	0	0.28409	1	4499	4499		118.74	13.997	1	2080400			3672	1175	2122	2133	5000	5000					0.08349180025709302
AQILSQRI	8	Unmodified	_AQILSQRI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7820129394531	2	464.782359	927.550165	0.4959	0.00023049	-0.94074	-0.00043724	-0.44483	-0.00020675	464.7817660364007	45.92	0.68419	45.971	45.724	46.408	0.051395					49	19	4	0	0	0	0.11183	2	4447	4435;4447		157.33	19.087	1	2469300			3673	1175	2122	2133	5001;5002	5002					0.08349180025709302
AQIPAVHR	8	Unmodified	_AQIPAVHR_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1;ENST00000567752.5_1_16:67272761-67281313:-|nuORF;FHOD1|p.F294Gfs*29|1|0.18|ENSG00000135723|chr16:67237352-67237353|-/GGAGTCC|frameshift_variant	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.2615051269531	2	446.261594	890.508634	-0.2987	-0.0001333	0.36709	0.00016382	0.068394	3.0522E-05	446.26161642931294	26.221	1.7819	26.221	25.211	26.993	0					101	42	4	0	0	0	0.71833	1	1321	1321		65.803	2.4969	1	3088100			3674	4925	2123	2134	5003	5003					0.059000440570343926
AQIQVQHV	8	Unmodified	_AQIQVQHV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MSMS	OPSCC_39_ClassI_Rep-1	1	461.759033203125	2	461.758884	921.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.654	1	36.654	36.154	37.154	0								0	0	0	0.33361	1	2930	2930		110.34	41.55	1				3675	10109	2124	2135	5004	5004					0.0393232047457559
AQIQVQHV	8	Unmodified	_AQIQVQHV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MSMS	OPSCC_39_ClassI_Rep-1	1	461.7590637207031	2	461.758884	921.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.712	1	36.712	36.212	37.212	0								0	0	0	0.27445	1	2939	2939		123.99	31.798	1				3676	10109	2124	2135	5005	5005					0.0393232047457559
AQIQVQHV	8	Unmodified	_AQIQVQHV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MSMS	OPSCC_39_ClassI_Rep-1	1	461.75909423828125	2	461.758884	921.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.794	1	36.794	36.294	37.294	0								0	0	0	0.27445	1	2951	2951		123.99	52.611	1				3677	10109	2124	2135	5006	5006					0.0393232047457559
AQIQVQHV	8	Unmodified	_AQIQVQHV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MSMS	OPSCC_39_ClassI_Rep-1	1	461.75933837890625	2	461.758884	921.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.894	1	36.894	36.394	37.394	0								0	0	0	0.35313	1	2966	2966		101.21	21.272	1				3678	10109	2124	2135	5007	5007					0.0393232047457559
AQIQVQHV	8	Unmodified	_AQIQVQHV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7589416503906	2	461.758884	921.503215	-0.32163	-0.00014852	-0.2802	-0.00012938	-0.60183	-0.0002779	461.75875524306366	36.591	1.1908	36.549	36.172	37.363	-0.042454					59	31	3	0	0	0	0.21202	4	2899	2890;2899;2911;2924		138.48	49.837	1	7747300			3679	10109	2124	2135	5008;5009;5010;5011	5009					0.0393232047457559
AQIQVQHV	8	Unmodified	_AQIQVQHV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7590026855469	2	461.758884	921.503215	0.10694	4.9381E-05	-0.68258	-0.00031519	-0.57563	-0.0002658	461.75855417005045	36.663	1.7178	36.701	35.927	37.645	0.038044					73	46	3	0	0	0	0.12427	4	2873	2863;2873;2884;2897		153.88	34.664	1	7708600			3680	10109	2124	2135	5012;5013;5014;5015	5013					0.0393232047457559
AQIVLAIMA	9	Unmodified	_AQIVLAIMA_					0	0	0			REV__ENSG00000160973|ENST00000377317|FOXH1	REV__ENSG00000160973|ENST00000377317|FOXH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2846374511719	2	465.278063	928.541574	-0.14706	-6.8421E-05	4.117	0.0019156	3.97	0.0018471	465.2799182394463	24.656	0.58713	24.441	24.177	24.764	-0.2151					29	13	3	0	0	0	0.024258	1	1140	1140		26.796	1.222	1	1760600	+		3681	25367	2125	2136	5016	5016					0.07444490064858655
AQIVTRSVLQ	10	Unmodified	_AQIVTRSVLQ_					0	0	0		TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant;nc|ENSG00000092203|O94842-3|TOX4;nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4	TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8084106445312	2	557.83258	1113.65061	-0.29523	-0.00016469	3.3678	0.0018787	3.0726	0.001714	557.834348844307	52.424	1.6944	52.277	51.544	53.239	-0.14723					77	45	2	0	0	0	0.03519	1	5565	5565		76.17	6.5421	1	332700			3682	1986	2126	2137	5017	5017					0.09832792288716519
AQKAKQTYTTT	11	Unmodified	_AQKAKQTYTTT_					0	0	0			REV__ENSG00000166317|ENST00000394810|SYNPO2L	REV__ENSG00000166317|ENST00000394810|SYNPO2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.25872802734375	3	414.222582	1239.64592	0.022533	9.3335E-06	2.8604	0.0011849	2.883	0.0011942	414.22314030836606	38.66	0.66138	38.434	38.11	38.771	-0.2257					35	17	3	0	0	0	0.024755	1	3213	3213		31.068	0	1	188170	+		3683	25998	2127	2138	5018	5018					0.03567863355283407
AQKELEALI	9	Unmodified	_AQKELEALI_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.79840087890625	2	507.795132	1013.57571	-0.25552	-0.00012975	0.40274	0.00020451	0.14721	7.4755E-05	507.7950528523689	57.902	0.25389	57.727	57.534	57.788	-0.1749					10	6	2	0	0	0	0.32811	1	6511	6511		71.877	7.6702	1	2811200			3684	3480	2128	2139	5019	5019					0.06946609757483202
AQKELEALI	9	Unmodified	_AQKELEALI_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.794921875	2	507.795132	1013.57571	-0.59043	-0.00029982	-0.13599	-6.9057E-05	-0.72642	-0.00036887	507.7949651034868	57.518	0.29629	57.613	57.429	57.725	0.095306					13	7	2	0	0	0	0.10174	2	6400	6400;6410		110.12	13.929	1	1915600			3685	3480	2128	2139	5020;5021	5020					0.06946609757483202
AQKELRQLQ	9	Unmodified	_AQKELRQLQ_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.322021484375	2	557.32238	1112.63021	-0.59049	-0.0003291	0.29427	0.000164	-0.29622	-0.00016509	557.3224616341885	28.87	0.72762	28.721	28.444	29.171	-0.14952					46	16	4	0	0	0	0.15366	1	1716	1716		98.629	18.917	1	2301100			3686	7449	2129	2140	5022	5022					0.07839621628886562
AQKENSVSI	9	Unmodified	_AQKENSVSI_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2586669921875	2	488.258914	974.503274	-0.99063	-0.00048368	0.30344	0.00014816	-0.68719	-0.00033553	488.25902341440184	30.942	1.0025	30.942	30.426	31.428	0					56	23	4	0	0	0	0.053401	3	2018	2018;2028;2042		127.46	20.454	1	3729300			3687	1063	2130	2141	5023;5024;5025	5023					0.01500275683918062
AQKENSVSI	9	Unmodified	_AQKENSVSI_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.25848388671875	2	488.258914	974.503274	-0.43302	-0.00021142	-0.22496	-0.00010984	-0.65798	-0.00032126	488.25874970056265	30.866	0.75482	30.878	30.627	31.382	0.011797					53	17	5	0	0	0	0.025498	2	2006	1997;2006		145.16	12.398	1	3755900			3688	1063	2130	2141	5026;5027	5027					0.01500275683918062
AQKENSVSI	9	Unmodified	_AQKENSVSI_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2586975097656	2	488.258914	974.503274	-0.99007	-0.00048341	0.26014	0.00012701	-0.72993	-0.0003564	488.25903284729526	30.518	1.0424	30.592	30.129	31.171	0.074316					58	24	4	0	0	0	0.01896	2	1920	1920;1932		150.36	32.551	1	3378900			3689	1063	2130	2141	5028;5029	5028					0.01500275683918062
AQKINDQELSM	11	Unmodified	_AQKINDQELSM_					0	0	0			REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.8890380859375	3	426.211577	1275.6129	-0.17723	-7.5536E-05	-4.3589	-0.0018578	-4.5361	-0.0019333	426.5437401502886	22.125	0.33083	21.94	21.811	22.142	-0.18539					12	6	3	0	0	0	0.024748	1	756	756		13.508	0	1	13405	+		3690	22437	2131	2142	5030	5030					-0.013880867590842172
AQKISKPIT	9	Unmodified	_AQKISKPIT_					0	0	0		RHPN2-SLC7A9|1|fusion;ENSG00000021488|ENST00000023064|SLC7A9	RHPN2-SLC7A9|1|fusion	RHPN2-SLC7A9|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2873840332031	2	493.305667	984.596781	0.28348	0.00013984	-1.4437	-0.00071221	-1.1603	-0.00057236	493.3050496435885	22.425	0.23315	22.223	22.097	22.33	-0.20198					11	4	3	0	0	0	0.024427	1	756	756		42.396	23.293	1	96590			3691	960	2132	2143	5031	5031					0.10386619856978996
AQKLNGLLV	9	Unmodified	_AQKLNGLLV_					0	0	0		ENST00000443374.6_1_10:52389585-52389780:+|nuORF	ENST00000443374.6_1_10:52389585-52389780:+|nuORF	ENST00000443374.6_1_10:52389585-52389780:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2899475097656	2	478.300384	954.586216	-0.29558	-0.00014138	-0.2713	-0.00012976	-0.56688	-0.00027114	478.30023322998386	25.865	0.12935	25.842	25.735	25.864	-0.023088					4	2	2	0	0	0	0.024487	1	1250	1250		17.365	0	1	31814			3692	14397	2133	2144	5032	5032					0.10710637202566886
AQKQEAFSI	9	Unmodified	_AQKQEAFSI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2690734863281	2	511.269281	1020.52401	-0.76794	-0.00039262	0.68578	0.00035062	-0.082154	-4.2003E-05	511.2694452744325	44.999	0.61824	44.999	44.691	45.31	0					42	17	3	0	0	0	0.041068	1	4343	4343		132.76	8.6778	1	2152800			3693	2053	2134	2145	5033	5033					0.0145686606357458
AQKQEAFSI	9	Unmodified	_AQKQEAFSI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.269281	1020.52401	-0.81297	-0.00041565	1.0116	0.0005172	0.19863	0.00010155	511.26954570867053	45.138	0.51851	44.99	44.662	45.181	-0.1488	-0.014344	0.00032371	NaN	132.76	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2650600			3694	2053	2134	2145							0.0145686606357458
AQKQEAFSI	9	Unmodified	_AQKQEAFSI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.269281	1020.52401	-0.44003	-0.00022498	0.46189	0.00023615	0.021854	1.1173E-05	511.2693334235821	44.98	0.62173	45.024	44.722	45.344	0.043877	0.019748	-0.00023839	NaN	132.76	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2275800			3695	2053	2134	2145							0.0145686606357458
AQKQSLLLV	9	Unmodified	_AQKQSLLLV_					0	0	0			REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2905578613281	2	500.313492	998.612431	0.052226	2.6129E-05	0.12584	6.2958E-05	0.17806	8.9088E-05	500.31330689006916	19.964	0.38157	19.796	19.62	20.002	-0.16774					18	7	3	0	0	0	0.024405	1	470	470		27.882	2.3082	1	65021	+		3696	24769	2135	2146	5034	5034					0.11306906374045411
AQKQSLLLV	9	Unmodified	_AQKQSLLLV_					0	0	0			REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.313492	998.612431	-0.29956	-0.00014987	0.69165	0.00034604	0.39208	0.00019617	500.3136150069046	19.84	0.4226	19.721	19.495	19.918	-0.11872	-0.053412	0.0015852	NaN	27.882	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41269	+		3697	24769	2135	2146							0.11306906374045411
AQKQSLLLV	9	Unmodified	_AQKQSLLLV_					0	0	0			REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	500.313492	998.612431	2.2237	0.0011125	-2.2824	-0.0011419	-0.058777	-2.9407E-05	500.3123630139459	19.741	0.38179	19.807	19.587	19.969	0.066195	0.032029	-0.0013907	NaN	27.882	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51420	+		3698	24769	2135	2146							0.11306906374045411
AQKQSLLLV	9	Unmodified	_AQKQSLLLV_					0	0	0			REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.313492	998.612431	0.21801	0.00010907	-0.43339	-0.00021683	-0.21539	-0.00010776	500.313066435297	20.092	0.486	19.868	19.631	20.117	-0.22344	0.093393	0.00045947	NaN	27.882	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55489	+		3699	24769	2135	2146							0.11306906374045411
AQKVTFSQ	8	Unmodified	_AQKVTFSQ_					0	0	0		ENSG00000130202|ENST00000252483|NECTIN2;nc|ENSG00000130202|Q92692-2|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2;nc|ENSG00000130202|Q92692-2|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7448425292969	2	454.745442	907.476331	0.2342	0.0001065	-1.5466	-0.00070332	-1.3124	-0.00059682	454.744657043267	101.69	1.5633	101.56	100.98	102.54	-0.12576					94	37	4	0	0	0	1.043	1	12677	12677		30.504	1.3541	1	2405200			3700	4395;18265	2136	2147	5035	5035					0.01889211863374385
AQLAVTKI	8	Unmodified	_AQLAVTKI_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.2689514160156	2	422.268553	842.522553	-0.23173	-9.7853E-05	0.7647	0.00032291	0.53297	0.00022506	422.26872200608346	45.802	0.69264	45.802	45.58	46.273	0					41	19	3	0	0	0	0.061055	1	4492	4492		171.38	50.516	1	2270900			3701	909	2137	2148	5036	5036					0.09499276765461673
AQLAVTKI	8	Unmodified	_AQLAVTKI_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.2690734863281	2	422.268553	842.522553	0.038499	1.6257E-05	0.3399	0.00014353	0.3784	0.00015979	422.2685813437631	45.763	0.7208	45.806	45.58	46.301	0.043877					40	20	3	0	0	0	0.11183	1	4410	4410		157.33	36.461	1	2203300			3702	909	2137	2148	5037	5037					0.09499276765461673
AQLAVTKI	8	Unmodified	_AQLAVTKI_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.268553	842.522553	-0.81125	-0.00034257	1.0649	0.00044966	0.25361	0.00010709	422.2688664567552	45.893	0.73161	45.741	45.512	46.244	-0.15157	-0.04197	0.00027817	NaN	171.38	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1951600			3703	909	2137	2148							0.09499276765461673
AQLCIHVT	8	Unmodified	_AQLCIHVT_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2657775878906	2	442.736563	883.458573	-0.69892	-0.00030944	-2.6286	-0.0011638	-3.3275	-0.0014732	442.7365905290702	39.442	0.2846	39.466	39.277	39.562	0.023727					7	7	2	0	0	0	0.027866	1	3311	3311		38.806	5.2906	1	51430	+		3704	25129	2138	2149	5038	5038					0.012181733368720415
AQLEQVYI	8	Unmodified	_AQLEQVYI_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.26092529296875	2	482.260925	962.507297	0.27703	0.0001336	0.3803	0.0001834	0.65733	0.000317	482.2609708296094	66.437	1.2662	66.437	66.224	67.49	0					57	35	3	0	0	0	0.71063	1	7904	7904		66.429	3.123	1	3901000			3705	2118	2139	2150	5039	5039					0.02454365177618456
AQLEQVYI	8	Unmodified	_AQLEQVYI_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2616882324219	2	482.260925	962.507297	-0.28429	-0.0001371	0.8068	0.00038909	0.52251	0.00025198	482.2611531047443	66.74	1.278	66.459	66.281	67.559	-0.28149					96	36	3	0	0	0	0.5947	2	7917	7917;7934		76.774	12.567	1	3600200			3706	2118	2139	2150	5040;5041	5040					0.02454365177618456
AQLEQVYI	8	Unmodified	_AQLEQVYI_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.26043701171875	2	482.260925	962.507297	-0.42737	-0.0002061	0.89587	0.00043204	0.46849	0.00022594	482.26118828518383	66.431	1.3233	66.461	66.237	67.56	0.030106					88	35	3	0	0	0	0.5947	1	7824	7824		76.774	2.7994	1	3955500			3707	2118	2139	2150	5042	5042					0.02454365177618456
AQLFLPLLA	9	Unmodified	_AQLFLPLLA_					0	0	0		nc|ENSG00000132692|Q96GW7-2|BCAN;ENSG00000132692|ENST00000329117|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30755615234375	2	493.307678	984.600803	0.23652	0.00011668	-0.93421	-0.00046085	-0.69768	-0.00034417	493.307150560105	101.01	1.7731	101.01	100.31	102.08	0					119	40	5	0	0	0	0.10076	4	12925	12925;12936;12949;12976		110.34	30.886	1	8510800			3708	4641	2140	2151	5043;5044;5045;5046	5043					0.10788709350708814
AQLFLPLLA	9	Unmodified	_AQLFLPLLA_					0	0	0		nc|ENSG00000132692|Q96GW7-2|BCAN;ENSG00000132692|ENST00000329117|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3072814941406	2	493.307678	984.600803	-0.12069	-5.9537E-05	-0.50125	-0.00024727	-0.62194	-0.00030681	493.3073562786403	100.93	1.3487	100.94	100.39	101.74	0.0090332					93	31	5	0	0	0	0.15889	4	12883	12870;12883;12895;12908		97.473	31.575	1	8015200			3709	4641	2140	2151	5047;5048;5049;5050	5048					0.10788709350708814
AQLFLPLLA	9	Unmodified	_AQLFLPLLA_					0	0	0		nc|ENSG00000132692|Q96GW7-2|BCAN;ENSG00000132692|ENST00000329117|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3076477050781	2	493.307678	984.600803	0.20997	0.00010358	-0.95103	-0.00046915	-0.74106	-0.00036557	493.30713692760764	101.07	1.5462	101.07	100.43	101.97	-0.0054474					102	36	5	0	0	0	0.20304	4	12874	12851;12862;12874;12887		88.643	28.349	1	7564200			3710	4641	2140	2151	5051;5052;5053;5054	5053					0.10788709350708814
AQLGAREQL	9	Unmodified	_AQLGAREQL_					0	0	0			REV__ENST00000488868.1_1_1:28559445-28559526:-|nuORF	REV__ENST00000488868.1_1_1:28559445-28559526:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2893981933594	2	493.274898	984.535243	-0.31472	-0.00015524	0.31645	0.0001561	0.0017321	8.5442E-07	493.27493998808893	22.524	0.60931	22.449	22.13	22.739	-0.075294					21	12	2	0	0	0	0.024344	1	779	779		54.776	11.912	1	397240	+		3711	33657	2141	2152	5055	5055					0.04235688157723416
AQLHEWPIS	9	Unmodified	_AQLHEWPIS_					0	0	0			REV__ENST00000534529.5_1_11:117094552-117094699:-|nuORF	REV__ENST00000534529.5_1_11:117094552-117094699:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.2620239257812	2	540.777274	1079.53999	-0.43136	-0.00023327	3.8431	0.0020783	3.4117	0.001845	540.7791676295905	61.408	1.0104	61.201	60.771	61.781	-0.20699					38	24	2	0	0	0	0.024405	1	6949	6949		20.947	0	1	1229400	+		3712	34642	2142	2153	5056	5056					0.003405723004561878
AQLHLTSLL	9	Unmodified	_AQLHLTSLL_					0	0	0			REV__TONSL|p.R1163H|1|0.08|ENSG00000160949|chr8:144433659-144433659|C/T|missense_variant	REV__TONSL|p.R1163H|1|0.08|ENSG00000160949|chr8:144433659-144433659|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.29791259765625	2	498.297842	994.581131	-0.37484	-0.00018678	0.36678	0.00018277	-0.0080602	-4.0164E-06	498.2978794687007	61.779	0.62707	61.846	61.43	62.057	0.067005					76	16	6	0	0	0	0.33245	1	7066	7066		71.296	0	1	3290800	+		3713	37718	2143	2154	5057	5057					0.0836233333996006
AQLILDPLS	9	Unmodified	_AQLILDPLS_					0	0	0		ENST00000423995.5_1_1:32697777-32700401:-|nuORF;ENST00000441044.5_1_1:32700162-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.73236083984375	2	485.2844	968.554247	-0.012031	-5.8384E-06	0.26463	0.00012842	0.2526	0.00012258	485.28436642926124	73.46	1.2635	73.27	72.42	73.683	-0.19027					41	30	2	0	0	0	0.024381	1	8512	8512		45.952	21.749	1	448180			3714	14033	2144	2155	5058	5058					0.06871224728752168
AQLILDPLS	9	Unmodified	_AQLILDPLS_					0	0	0		ENST00000423995.5_1_1:32697777-32700401:-|nuORF;ENST00000441044.5_1_1:32700162-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.2844	968.554247	-0.34972	-0.00016972	0.65318	0.00031698	0.30345	0.00014726	485.2845131295561	73.635	0.85777	73.363	72.719	73.577	-0.27126	0.031941	0.00033398	NaN	66.429	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	737580			3715	14033	2144	2155							0.06871224728752168
AQLILDPLS	9	Unmodified	_AQLILDPLS_					0	0	0		ENST00000423995.5_1_1:32697777-32700401:-|nuORF;ENST00000441044.5_1_1:32700162-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.2844	968.554247	-0.63061	-0.00030603	2.6765	0.0012989	2.0459	0.00099283	485.2846634434408	73.343	0.73985	73.352	72.818	73.558	0.0096512	0.021043	0.0022977	NaN	66.429	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775280			3716	14033	2144	2155							0.06871224728752168
AQLILDPLS	9	Unmodified	_AQLILDPLS_					0	0	0		ENST00000423995.5_1_1:32697777-32700401:-|nuORF;ENST00000441044.5_1_1:32700162-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.2844	968.554247	-0.10551	-5.1202E-05	0.062467	3.0314E-05	-0.043042	-2.0887E-05	485.28430477633293	73.584	0.63558	73.307	73.01	73.645	-0.2769	-0.023909	-0.00023935	NaN	66.429	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463500			3717	14033	2144	2155							0.06871224728752168
AQLILDPLS	9	Unmodified	_AQLILDPLS_					0	0	0		ENST00000423995.5_1_1:32697777-32700401:-|nuORF;ENST00000441044.5_1_1:32700162-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	ENST00000423995.5_1_1:32697777-32700401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.2844	968.554247	-0.35393	-0.00017176	0.1597	7.7499E-05	-0.19424	-9.426E-05	485.2843790520956	73.629	0.75143	73.364	72.936	73.687	-0.26479	0.03275	-0.00014498	NaN	66.429	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530440			3718	14033	2144	2155							0.06871224728752168
AQLILKAI	8	Unmodified	_AQLILKAI_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.29486083984375	2	435.294571	868.574589	1.3693	0.00059603	-1.1437	-0.00049785	0.22556	9.8184E-05	435.29394495726484	59.46	1.1845	59.46	59.145	60.33	0					68	31	4	0	0	0	0.39824	2	6789	6789;6803		97.473	0	1	4587300			3719	3315	2145	2156	5059;5060	5059					0.13504440179224275
AQLILKAI	8	Unmodified	_AQLILKAI_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2949523925781	2	435.294571	868.574589	0.7054	0.00030706	-0.44236	-0.00019256	0.26304	0.0001145	435.29424616964417	59.645	1.2616	59.445	59.172	60.434	-0.20016					77	33	4	0	0	0	0.30538	3	6793	6782;6793;6805		110.34	0	1	3779100			3720	3315	2145	2156	5061;5062;5063	5062					0.13504440179224275
AQLILKAI	8	Unmodified	_AQLILKAI_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.29522705078125	2	435.294571	868.574589	0.54418	0.00023688	-0.30326	-0.00013201	0.24092	0.00010487	435.2943062295588	59.359	1.2256	59.445	59.099	60.325	0.085682					71	32	4	0	0	0	0.24207	3	6689	6689;6699;6713		133.47	0	1	3876600			3721	3315	2145	2156	5064;5065;5066	5064					0.13504440179224275
AQLILKAI	8	Unmodified	_AQLILKAI_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.294571	868.574589	0.63027	0.00027435	-0.60351	-0.0002627	0.026757	1.1647E-05	435.29413265555917	59.471	0.32914	59.273	59.091	59.42	-0.19742	-0.08744	8.0123E-05	NaN	133.47	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168180			3722	3315	2145	2156							0.13504440179224275
AQLILKAI	8	Unmodified	_AQLILKAI_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.294571	868.574589	0.61867	0.00026931	-0.86042	-0.00037454	-0.24175	-0.00010523	435.294018921789	59.464	0.48175	59.283	58.991	59.473	-0.18133	-0.078247	-0.00014354	NaN	133.47	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107740			3723	3315	2145	2156							0.13504440179224275
AQLILKAI	8	Unmodified	_AQLILKAI_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	435.294571	868.574589	0.72297	0.00031471	-0.71274	-0.00031025	0.010236	4.4558E-06	435.29413389645254	59.508	0.44682	59.259	59.01	59.457	-0.24842	-0.10162	-1.4969E-05	NaN	133.47	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117440			3724	3315	2145	2156							0.13504440179224275
AQLLKLFW	8	Unmodified	_AQLLKLFW_					0	0	0			REV__nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	REV__nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2843017578125	2	509.807845	1017.60114	-0.74559	-0.00038011	0.96339	0.00049114	0.2178	0.00011104	509.8077681931181	46.373	0.7498	46.171	45.819	46.569	-0.20226					49	20	3	0	0	0	0.027866	1	4498	4498		19.36	0	1	1508500	+		3725	19678	2146	2157	5067	5067					0.09304129070562794
AQLLNARCE	9	Unmodified	_AQLLNARCE_					0	0	0			REV__MYH2|p.R1682C|1|0.1|ENSG00000125414|chr17:10524597-10524597|G/A|missense_variant	REV__MYH2|p.R1682C|1|0.1|ENSG00000125414|chr17:10524597-10524597|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.28387451171875	2	509.260933	1016.50731	-0.75392	-0.00038394	-4.4847	-0.0022839	-5.2387	-0.0026678	509.25915588274967	46.417	0.18087	46.214	46.119	46.3	-0.20226					7	4	3	0	0	0	0.024374	1	4449	4449		32.812	11.11	1	372070	+		3726	36407	2147	2158	5068	5068					-0.0002795809402869054
AQLLPHHSL	9	Unmodified	_AQLLPHHSL_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.28668212890625	2	508.287808	1014.56106	-0.18795	-9.553E-05	-0.067283	-3.4199E-05	-0.25523	-0.00012973	508.28757757474756	52.773	1.1675	52.584	52.227	53.395	-0.18982					49	29	2	0	0	0	0.27161	1	5509	5509		79.451	15.244	1	1894400			3727	8009	2148	2159	5069	5069					0.05436582400000134
AQLLVFVLV	9	Unmodified	_AQLLVFVLV_					0	0	0		ENSG00000184394|ENST00000641086|OR4N5	ENSG00000184394|ENST00000641086|OR4N5	ENSG00000184394|ENST00000641086|OR4N5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.29339599609375	2	501.323328	1000.6321	0.065277	3.2725E-05	-0.37653	-0.00018876	-0.31126	-0.00015604	501.32303170293125	73.458	0.9538	73.458	73.219	74.172	0					29	23	2	0	0	0	0.024517	1	9043	9043		12.959	0	1	1488400			3728	9334	2149	2160	5070	5070					0.1318128238481222
AQLNTKQL	8	Unmodified	_AQLNTKQL_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;ENST00000489048.1_1_2:152547165-152552100:-|nuORF	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.2668151855469	2	458.266542	914.51853	-0.15678	-7.1848E-05	0.22097	0.00010127	0.064193	2.9417E-05	458.2665034989405	35.91	1.0974	35.694	35.229	36.326	-0.21661					49	29	2	0	0	0	0.27973	1	2778	2778		120.62	7.2094	1	3561800			3729	9199	2150	2161	5071	5071					0.05785187271760606
AQLPAHRV	8	Unmodified	_AQLPAHRV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.26171875	2	446.261594	890.508634	-0.2987	-0.0001333	0.36709	0.00016382	0.068394	3.0522E-05	446.26161642931294	26.221	1.7819	26.221	25.211	26.993	0					101	42	4	0	0	0	0.44658	2	1309	1299;1309		90.777	21.99	1	3088100			3730	15509	2151	2162	5072;5073	5073					0.059000440570343926
AQLPAHRV	8	Unmodified	_AQLPAHRV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2617492675781	2	446.261594	890.508634	-0.2723	-0.00012152	0.31383	0.00014005	0.041534	1.8535E-05	446.2616095578396	26.238	1.5396	26.215	25.403	26.943	-0.023088					94	36	4	0	0	0	0.80469	3	1288	1288;1300;1311		58.782	9.2347	1	2940600			3731	15509	2151	2162	5074;5075;5076	5074					0.059000440570343926
AQLPAHRV	8	Unmodified	_AQLPAHRV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.2616271972656	2	446.261594	890.508634	0.079727	3.5579E-05	-0.022881	-1.0211E-05	0.056846	2.5368E-05	446.2614912023332	26.066	1.4586	26.148	25.256	26.714	0.081293					84	34	4	0	0	0	0.6248	2	1235	1225;1235		73.975	10.668	1	3009800			3732	15509	2151	2162	5077;5078	5078					0.059000440570343926
AQLPLPLW	8	Unmodified	_AQLPLPLW_					0	0	0			REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF	REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.30596923828125	2	469.278921	936.543289	-0.36113	-0.00016947	-4.2133	-0.0019772	-4.5744	-0.0021467	469.2767646915074	53.648	0.65165	53.501	53.06	53.711	-0.14723					30	17	3	0	0	0	0.027866	1	5720	5720		20.482	4.84	1	312960	+		3733	33771	2152	2163	5079	5079					0.07247867145144937
AQLPSLLSV	9	Unmodified	_AQLPSLLSV_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2792663574219	2	464.279118	926.543683	-0.41996	-0.00019498	0.60112	0.00027909	0.18116	8.4107E-05	464.27928964591996	82.728	1.3251	82.728	82.237	83.562	0					64	30	3	0	0	0	0.013887	4	10330	10320;10330;10341;10355		211.39	46.115	1	1697600			3734	1240	2153	2164	5080;5081;5082;5083	5081					0.0774724207434474
AQLPSLLSV	9	Unmodified	_AQLPSLLSV_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2787780761719	2	464.279118	926.543683	1.7547	0.00081467	-1.4632	-0.00067932	0.29152	0.00013535	464.2783440499738	82.813	1.1971	82.703	82.336	83.533	-0.11006					60	27	3	0	0	0	0.013293	4	10324	10300;10312;10324;10338		176.09	23.051	1	1630400			3735	1240	2153	2164	5084;5085;5086;5087	5086					0.0774724207434474
AQLPSLLSV	9	Unmodified	_AQLPSLLSV_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2789001464844	2	464.279118	926.543683	0.16779	7.7901E-05	0.10038	4.6604E-05	0.26817	0.0001245	464.2790753574848	82.654	1.2809	82.681	82.274	83.555	0.026558					65	29	3	0	0	0	0.013293	4	10238	10238;10248;10260;10273		180.93	41.276	1	1952900			3736	1240	2153	2164	5088;5089;5090;5091	5088					0.0774724207434474
AQLQQSILS	9	Unmodified	_AQLQQSILS_					0	0	0		nc|ENSG00000154914|Q70EL4-3|USP43;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43	nc|ENSG00000154914|Q70EL4-3|USP43	nc|ENSG00000154914|Q70EL4-3|USP43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2875671386719	2	494.277106	986.53966	0.63034	0.00031156	-0.53675	-0.0002653	0.093593	4.6261E-05	494.27714356613296	22.691	0.55439	22.489	22.285	22.84	-0.20199					27	11	4	0	0	0	0.024313	1	803	803		42.864	23.761	1	663820			3737	6442	2154	2165	5092	5092					0.045851525806369864
AQLQVDTTKV	10	Unmodified	_AQLQVDTTKV_					0	0	0			REV__ENSG00000078081|ENST00000265598|LAMP3	REV__ENSG00000078081|ENST00000265598|LAMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.810791015625	2	551.808771	1101.60299	0.11438	6.3114E-05	3.1082	0.0017151	3.2226	0.0017782	551.8104951619639	93.399	0.95776	93.277	93.015	93.973	-0.12215					44	21	4	0	0	0	0.69662	1	11503	11503		67.494	5.3863	1	322660	+		3738	20603	2155	2166	5093	5093					0.05625093297862804
AQLRAAQLE	9	Unmodified	_AQLRAAQLE_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7384033203125	2	500.282723	998.550893	-1.6056	-0.00080327	1.4603	0.00073055	-0.14536	-7.2723E-05	500.28333008449556	33.75	0.54783	33.574	33.311	33.859	-0.17557					22	13	2	0	0	0	0.024457	1	2441	2441		37.159	15.199	1	511170			3739	4460	2156	2167	5094	5094					0.05155974674744357
AQLRHRKESL	10	Unmodified	_AQLRHRKESL_					0	0	0			REV__ENSG00000104901|ENST00000221498|DKKL1	REV__ENSG00000104901|ENST00000221498|DKKL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.8841857910156	3	413.242311	1236.7051	-0.15392	-6.3607E-05	3.5769	0.0014781	3.4229	0.0014145	413.2437526506182	28.007	0.43156	27.855	27.689	28.121	-0.15195					22	10	3	0	0	0	0.03519	1	1565	1565		32.751	0	1	243380	+		3740	21481	2157	2168	5095	5095					0.09621804160133252
AQLRLAQEA	9	Unmodified	_AQLRLAQEA_					0	0	0		ENST00000522899.1_1_8:144461534-144462449:+|nuORF;ENSG00000158106|ENST00000289013|RHPN1	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7381896972656	2	500.282723	998.550893	-0.094892	-4.7473E-05	0.099998	5.0027E-05	0.0051055	2.5542E-06	500.28255521887064	33.805	0.60362	33.581	33.28	33.883	-0.22412					24	14	2	0	0	0	0.024447	1	2407	2407		32.812	9.7699	1	485130			3741	6645	2158	2169	5096	5096					0.05155974674744357
AQLSGGHRSL	10	Unmodified	_AQLSGGHRSL_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3060302734375	2	513.277972	1024.54139	-0.42332	-0.00021728	1.8442	0.0009466	1.4209	0.00072932	513.2787444471026	53.81	0.43237	53.663	53.456	53.889	-0.14723					19	11	2	0	0	0	0.03519	1	5789	5789		51.193	0	1	401380	+		3742	19855	2159	2170	5097	5097					0.03010206389240011
AQLVAIYKTL	10	Unmodified	_AQLVAIYKTL_					0	0	0		nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.337890625	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	1.089	1	12693	12693		34.173	11.13	1	13153000			3743	6579	2160	2171	5098	5098					0.11535748579603933
AQLVQGVGR	9	Unmodified	_AQLVQGVGR_					0	0	0			REV__ENST00000589789.1_1_19:38146155-38146341:-|nuORF	REV__ENST00000589789.1_1_19:38146155-38146341:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.2947998046875	2	464.272158	926.529764	-0.9268	-0.00043029	-3.3989	-0.001578	-4.3257	-0.0020083	464.27060588594713	48.762	0.46396	48.482	48.183	48.647	-0.27977					18	12	2	0	0	0	0.024294	1	4829	4829		37.159	8.0096	1	265230	+		3744	35683	2161	2172	5099	5099					0.06356009365913451
AQLVQGVGR	9	Unmodified	_AQLVQGVGR_					0	0	0			REV__ENST00000589789.1_1_19:38146155-38146341:-|nuORF	REV__ENST00000589789.1_1_19:38146155-38146341:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.2948303222656	2	464.272158	926.529764	-0.19965	-9.269E-05	-4.2625	-0.001979	-4.4621	-0.0020716	464.27020150895663	48.563	0.39649	48.381	48.162	48.558	-0.18206					19	10	2	0	0	0	0.024205	1	4803	4803		53.351	16.192	1	303810	+		3745	35683	2161	2172	5100	5100					0.06356009365913451
AQLYTRFPV	9	Unmodified	_AQLYTRFPV_					0	0	0			REV__ENST00000439384.5_3_7:29186332-29186525:+|nuORF	REV__ENST00000439384.5_3_7:29186332-29186525:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.8025512695312	2	547.803291	1093.59203	-0.63951	-0.00035033	-2.1229	-0.001163	-2.7625	-0.0015133	547.8012374687493	30.798	1.0485	30.62	30.203	31.252	-0.17818					69	25	4	0	0	0	0.77768	1	1985	1985		40.778	0.71999	1	1290200	+		3746	32509	2162	2173	5101	5101					0.04897735714234841
AQMCDEKEL	9	Unmodified	_AQMCDEKEL_					0	0	0			REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2715454101562	2	533.730817	1065.44708	0.21161	0.00011294	-0.49138	-0.00026226	-0.27977	-0.00014932	533.73042967607	59.908	0.98214	59.908	59.637	60.619	0					34	26	2	0	0	0	0.024374	1	6827	6827		58.782	5.4305	1	253840	+		3747	27143	2163	2174	5102	5102					-0.08302436539429436
AQMCDEKEL	9	Unmodified	_AQMCDEKEL_					0	0	0			REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.730817	1065.44708	-0.73625	-0.00039296	0.46453	0.00024793	-0.27172	-0.00014502	533.7309574070871	60.119	0.89012	59.919	59.654	60.544	-0.20016	-0.063767	-0.00010934	NaN	58.782	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305040	+		3748	27143	2163	2174							-0.08302436539429436
AQMCDEKEL	9	Unmodified	_AQMCDEKEL_					0	0	0			REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.730817	1065.44708	-1.0625	-0.00056708	1.0952	0.00058453	0.032693	1.7449E-05	533.7313769533189	59.785	0.55535	59.867	59.575	60.13	0.082043	-0.11538	0.00056386	NaN	58.782	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324800	+		3749	27143	2163	2174							-0.08302436539429436
AQMPLLLVD	9	Unmodified	_AQMPLLLVD_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8052978515625	2	500.280803	998.547053	-0.0061159	-3.0597E-06	2.109	0.0010551	2.1028	0.001052	500.28261151266446	42.359	0.63412	42.385	42.12	42.754	0.026012					50	17	5	0	0	0	0.024263	1	3830	3830		51.335	13.524	1	1386400	+		3750	27316	2164	2175	5103	5103					0.04772168856686676
AQNAEELVKI	10	Unmodified	_AQNAEELVKI_					0	0	0			REV__nc|ENSG00000100201|Q92841-1|DDX17	REV__nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.8086547851562	2	557.808771	1113.60299	-0.098855	-5.5142E-05	-0.40667	-0.00022684	-0.50552	-0.00028199	557.8085208705772	52.184	1.0488	52.184	51.702	52.75	0					83	27	5	0	0	0	0.52143	1	5571	5571		85.862	10.819	1	7109900	+		3751	21063	2165	2176	5104	5104					0.05073093297869491
AQNAEELVKI	10	Unmodified	_AQNAEELVKI_					0	0	0			REV__nc|ENSG00000100201|Q92841-1|DDX17	REV__nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.809326171875	2	557.808771	1113.60299	-0.40906	-0.00022818	0.12559	7.0053E-05	-0.28348	-0.00015813	557.8087046291297	52.082	1.2525	52.174	51.649	52.902	0.091938					82	32	5	0	0	0	0.65479	1	5482	5482		70.816	3.3225	1	3803200	+		3752	21063	2165	2176	5105	5105					0.05073093297869491
AQNGIPLRI	9	Unmodified	_AQNGIPLRI_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.29547119140625	2	491.295633	980.576714	-0.16672	-8.1907E-05	-0.52225	-0.00025658	-0.68897	-0.00033849	491.295393821618	56.68	1.2894	56.68	56.277	57.567	0					117	35	4	0	0	0	0.096521	4	6326	6314;6326;6337;6364		111.65	34.802	1	23648000			3753	10796	2166	2177	5106;5107;5108;5109	5107					0.08564868917039803
AQNGIPLRI	9	Unmodified	_AQNGIPLRI_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.29534912109375	2	491.295633	980.576714	-0.45184	-0.00022199	-0.24646	-0.00012108	-0.6983	-0.00034307	491.2955178190635	56.788	1.5234	56.624	56.058	57.582	-0.16432					118	41	4	0	0	0	0.18915	5	6301	6301;6313;6325;6338;6351		90.777	19.481	1	23064000			3754	10796	2166	2177	5110;5111;5112;5113;5114	5110					0.08564868917039803
AQNGIPLRI	9	Unmodified	_AQNGIPLRI_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2946472167969	2	491.295633	980.576714	-0.53262	-0.00026167	-0.19011	-9.3402E-05	-0.72274	-0.00035508	491.2955513989625	56.5	1.4692	56.598	55.999	57.468	0.097893					110	40	4	0	0	0	0.06122	4	6232	6208;6220;6232;6244		124.59	41.484	1	23677000			3755	10796	2166	2177	5115;5116;5117;5118	5117					0.08564868917039803
AQNLIGISI	9	Unmodified	_AQNLIGISI_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1;ENST00000469819.5_1_22:38453534-38461185:+|nuORF;ENST00000466374.1_1_22:38453534-38463917:+|nuORF	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7772521972656	2	464.776742	927.538931	0.20453	9.5061E-05	-0.14368	-6.678E-05	0.06085	2.8282E-05	464.776534374558	79.937	0.71223	79.959	79.688	80.4	0.021439					24	16	2	0	0	0	0.67687	1	9848	9848		47.657	1.7054	1	680320			3756	2143	2167	2178	5119	5119					0.07226357931563143
AQNQVDQIT	9	Unmodified	_AQNQVDQIT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7682189941406	2	508.753995	1015.49344	-0.70758	-0.00035998	0.068131	3.4662E-05	-0.63945	-0.00032532	508.7528759744463	60.822	0.59715	60.822	60.619	61.216	0					33	15	4	0	0	0	0.024025	1	7004	7004		29.17	0	1	431920	+		3757	28358	2168	2179	5120	5120					-0.0136891232148173
AQNQVDQIT	9	Unmodified	_AQNQVDQIT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7680358886719	2	508.753995	1015.49344	-1.0855	-0.00055226	-1.5293	-0.00077802	-2.6148	-0.0013303	508.7531133669899	60.72	0.56542	60.798	60.574	61.139	0.078888					26	14	2	0	0	0	0.024257	1	6921	6921		49.536	0	1	331650	+		3758	28358	2168	2179	5121	5121					-0.0136891232148173
AQNQVLNLI	9	Unmodified	_AQNQVLNLI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7928161621094	2	506.792924	1011.57129	-0.94696	-0.00047991	1.0571	0.00053573	0.11014	5.5818E-05	506.79326509839916	75.788	1.2378	75.788	75.481	76.719	0					61	31	4	0	0	0	0.074956	1	9326	9326		119.56	20.182	1	2690000			3759	3659	2169	2180	5122	5122					0.06597145334569632
AQNQVLNLI	9	Unmodified	_AQNQVLNLI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7923583984375	2	506.792924	1011.57129	-0.52041	-0.00026374	0.54619	0.00027681	0.025787	1.3069E-05	506.7930409713048	75.99	0.8673	75.746	75.477	76.344	-0.24455					51	22	4	0	0	0	0.08613	2	9313	9313;9323		115.46	21.254	1	2726000			3760	3659	2169	2180	5123;5124	5123					0.06597145334569632
AQNRFLLEL	9	Unmodified	_AQNRFLLEL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.3143920898438	2	552.314023	1102.61349	-0.53229	-0.00029399	0.9192	0.00050769	0.38691	0.00021369	552.3139844076992	69.837	0.72148	69.85	69.349	70.071	0.012413					30	16	2	0	0	0	0.057894	1	8355	8355		125.81	10.355	1	1616700			3761	968	2170	2181	5125	5125					0.06629120742945815
AQNRFLLEL	9	Unmodified	_AQNRFLLEL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.314023	1102.61349	-0.0039479	-2.1805E-06	-0.22283	-0.00012307	-0.22678	-0.00012525	552.3136709029054	69.742	0.64894	69.742	69.344	69.993	0	-0.046135	0.00023157	NaN	125.81	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1495100			3762	968	2170	2181							0.06629120742945815
AQNRFLLEL	9	Unmodified	_AQNRFLLEL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.314023	1102.61349	0.3188	0.00017608	-0.74887	-0.00041361	-0.43007	-0.00023754	552.3134869671404	70.066	0.61353	69.773	69.386	70	-0.29291	-0.015128	-0.00034951	NaN	125.81	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1818500			3763	968	2170	2181							0.06629120742945815
AQNRLSSLI	9	Unmodified	_AQNRLSSLI_					0	0	0			REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	REV__nc|ENSG00000119899|Q9NRA2-2|SLC17A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7800598144531	2	501.290548	1000.56654	-0.12266	-6.1487E-05	4.4436	0.0022276	4.321	0.0021661	501.7955370509668	45.282	0.53726	45.326	45.11	45.647	0.043877					27	15	3	0	0	0	0.022587	1	4346	4346		74.255	10.048	1	522720	+		3764	36608	2171	2182	5126	5126					0.06628261191815454
AQPGLQVRL	9	Unmodified	_AQPGLQVRL_					0	0	0		ENST00000460528.1_1_7:128519440-128519819:-|nuORF	ENST00000460528.1_1_7:128519440-128519819:-|nuORF	ENST00000460528.1_1_7:128519440-128519819:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2953796386719	2	491.295633	980.576714	-0.16672	-8.1907E-05	-0.52225	-0.00025658	-0.68897	-0.00033849	491.295393821618	56.68	1.2894	56.68	56.277	57.567	0					117	35	4	0	0	0	0.08613	1	6350	6350		115.46	3.8107	1	23648000			3765	14660	2172	2183	5127	5127					0.08564868917039803
AQPGLQVRL	9	Unmodified	_AQPGLQVRL_					0	0	0		ENST00000460528.1_1_7:128519440-128519819:-|nuORF	ENST00000460528.1_1_7:128519440-128519819:-|nuORF	ENST00000460528.1_1_7:128519440-128519819:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2956237792969	2	491.295633	980.576714	-0.53262	-0.00026167	-0.19011	-9.3402E-05	-0.72274	-0.00035508	491.2955513989625	56.5	1.4692	56.598	55.999	57.468	0.097893					110	40	4	0	0	0	0.31247	1	6256	6256		73.975	5.1879	1	23677000			3766	14660	2172	2183	5128	5128					0.08564868917039803
AQPHGPKFY	9	Unmodified	_AQPHGPKFY_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2953491210938	2	522.766709	1043.51886	0.60264	0.00031504	-2.432	-0.0012714	-1.8294	-0.00095633	522.7646432679223	35.989	0.36818	35.79	35.575	35.943	-0.19829					14	10	2	0	0	0	0.024205	1	2765	2765		63.306	0.32785	1	154820	+		3767	36829	2173	2184	5129	5129					-0.0011539300837739574
AQPHGPKFY	9	Unmodified	_AQPHGPKFY_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	522.766709	1043.51886	-1.5401	-0.00080509	-2.5821	-0.0013499	-4.1222	-0.0021549	522.7652173848695	35.946	0.82659	35.946	35.647	36.474	0	0.092162	0.00049983	NaN	63.306	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5515300	+		3768	36829	2173	2184							-0.0011539300837739574
AQPHGPKFY	9	Unmodified	_AQPHGPKFY_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	522.766709	1043.51886	-1.296	-0.0006775	-2.9424	-0.0015382	-4.2384	-0.0022157	522.7650381992048	35.798	0.83904	35.756	35.405	36.244	-0.042458	-0.097802	0.00012318	NaN	63.306	59	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5220200	+		3769	36829	2173	2184							-0.0011539300837739574
AQPHGPKFY	9	Unmodified	_AQPHGPKFY_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	522.766709	1043.51886	-0.55449	-0.00028987	-3.6737	-0.0019205	-4.2282	-0.0022104	522.7646778054808	35.848	1.0717	35.892	35.343	36.415	0.04406	0.038185	-0.00064143	NaN	63.306	75	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5251300	+		3770	36829	2173	2184							-0.0011539300837739574
AQPIGPVLLV	10	Unmodified	_AQPIGPVLLV_					0	0	0			REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2861022949219	2	503.81841	1005.62227	-0.79075	-0.00039839	1.397	0.00070385	0.60628	0.00030545	503.8185809933329	83.768	0.65192	83.768	83.52	84.171	0					20	14	2	0	0	0	0.03519	1	10452	10452		20.947	0.95016	1	81351	+		3771	35041	2174	2185	5130	5130					0.11968094379415106
AQPIGPVLLV	10	Unmodified	_AQPIGPVLLV_					0	0	0			REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.81841	1005.62227	-0.95908	-0.0004832	1.4451	0.00072805	0.48599	0.00024485	503.81871365205745	83.827	0.73453	83.736	83.469	84.203	-0.090454	-0.015688	2.1037E-05	NaN	20.947	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158520	+		3772	35041	2174	2185							0.11968094379415106
AQPKWRPV	8	Unmodified	_AQPKWRPV_					0	0	0			REV__nc|ENSG00000104774|O00754-2|MAN2B1	REV__nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.27154541015625	2	491.285069	980.555585	0.049602	2.4369E-05	3.1668	0.0015558	3.2164	0.0015802	491.2860698791277	63.585	0.17966	63.334	63.228	63.408	-0.25141					6	4	2	0	0	0	0.027866	1	7401	7401		33.516	20.556	1	53162	+		3773	21462	2175	2186	5131	5131					0.06452903608180804
AQPLRVLF	8	Unmodified	_AQPLRVLF_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000285975|A6NNJ1|FAM90A9;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000285975|A6NKC0|FAM90A7;nc|ENSG00000285937|A6NJQ4|FAM90A8;ENSG00000229924|ENST00000512047|FAM90A26;ENSG00000171847|ENST00000538603|FAM90A1;nc|ENSG00000205879|Q658T7|FAM90A2P	nc|ENSG00000233295|A6NIJ5|FAM90A20;ENSG00000229924|ENST00000512047|FAM90A26	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.81024169921875	2	472.28982	942.565087	0.92254	0.00043571	0.58295	0.00027532	1.5055	0.00071103	472.2916120268383	19.53	0.14987	19.33	19.255	19.405	-0.2001					4	2	2	0	0	0	0.027866	1	426	426		37.028	0	1	5355.1			3774	18749;8203	2176	2187	5132	5132					0.09150671893689832
AQPPAPIEV	9	Unmodified	_AQPPAPIEV_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.2553405761719	2	461.255643	920.496732	0.086547	3.992E-05	-4.1016	-0.0018919	-4.0151	-0.001852	461.2553612220737	46.121	0.90889	46.024	45.564	46.473	-0.096649					78	24	5	0	0	0	0.33245	1	4417	4417		71.296	10.324	1	2430200			3775	2626	2177	2188	5133	5133					0.033303825231769224
AQPPSSLVI	9	Unmodified	_AQPPSSLVI_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000107438|ENST00000329399|PDLIM1	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.2635498046875	2	456.263468	910.512382	0.048928	2.2324E-05	0.22089	0.00010078	0.26982	0.00012311	456.2634194581184	63.686	0.96988	63.458	63.135	64.104	-0.22773					52	24	3	0	0	0	0.11092	1	7204	7204		108.09	22.728	1	3243800			3776	38149	2178	2189	5134	5134					0.053546690402299646
AQPWGAPVEV	10	Unmodified	_AQPWGAPVEV_					0	0	0		nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000077782|P11362-15|FGFR1;ENST00000397090.4_1_8:38287194-38314994:-|nuORF;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-2|FGFR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2715454101562	2	527.271824	1052.5291	0.63968	0.00033728	2.3742	0.0012519	3.0139	0.0015892	527.2712476933875	82.241	1.4543	82.131	81.441	82.895	-0.11006					56	34	3	0	0	0	0.71272	1	10229	10229		66.429	8.9766	1	6518300			3777	18086;18087	2179	2190	5135	5135					0.004931699261760514
AQQDLQLLL	9	Unmodified	_AQQDLQLLL_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7798461914062	2	521.300581	1040.58661	-0.37353	-0.00019472	1.1146	0.00058103	0.74106	0.00038632	521.3013576752157	85.763	0.5824	85.705	85.481	86.064	-0.05761					19	13	2	0	0	0	0.024313	1	10721	10721		51.193	15.574	1	163370			3778	5956	2180	2191	5136	5136					0.06794012131763338
AQQDLQLLL	9	Unmodified	_AQQDLQLLL_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7802124023438	2	521.300581	1040.58661	-1.038	-0.00054111	1.8773	0.00097865	0.83932	0.00043754	521.3017440848561	85.734	0.49709	85.758	85.575	86.072	0.023666					23	11	3	0	0	0	0.023454	1	10681	10681		71.877	0	1	204180			3779	5956	2180	2191	5137	5137					0.06794012131763338
AQQELKLLL	9	Unmodified	_AQQELKLLL_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.R539P|1|0.29|ENSG00000119041|chr2:196776089-196776089|C/G|missense_variant	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3247680664062	2	528.326599	1054.63865	-0.18479	-9.7631E-05	-0.25048	-0.00013234	-0.43527	-0.00022997	528.3263591515353	66.006	1.2828	66.006	65.643	66.926	0					76	36	5	0	0	0	0.6238	1	7874	7874		51.193	1.7511	1	8288100			3780	3719	2181	2192	5138	5138					0.11351175545519254
AQQIAYEI	8	Unmodified	_AQQIAYEI_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.24481201171875	2	468.245275	934.475997	0.40243	0.00018843	-1.4974	-0.00070113	-1.0949	-0.0005127	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.97924	1	12898	12898		40.573	1.7665	1	4364500			3781	18506	2182	2193	5139	5139					0.006137921435083626
AQQPHIAGV	9	Unmodified	_AQQPHIAGV_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.750732421875	2	460.751059	919.487565	-0.89234	-0.00041115	1.0252	0.00047238	0.13288	6.1227E-05	460.7512857025697	38.696	0.46059	38.724	38.462	38.923	0.027275					30	11	3	0	0	0	0.22754	2	3217	3204;3217		85.359	10.673	1	1362200			3782	1191	2183	2194	5140;5141	5141					0.0246003395752723
AQQPHIAGV	9	Unmodified	_AQQPHIAGV_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	460.751059	919.487565	-0.47886	-0.00022063	-0.4556	-0.00020992	-0.93446	-0.00043055	460.751105990411	38.585	1.0663	38.502	38.149	39.215	-0.082516	-0.050278	-0.00099192	NaN	85.359	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1128500			3783	1191	2183	2194							0.0246003395752723
AQQPHIAGV	9	Unmodified	_AQQPHIAGV_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	460.751059	919.487565	-1.113	-0.00051282	4.1777	0.0019249	3.0647	0.001412	460.7522279794836	38.66	0.40781	38.48	38.237	38.645	-0.17929	-0.072036	0.0032776	NaN	85.359	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114760			3784	1191	2183	2194							0.0246003395752723
AQQPHIAGV	9	Unmodified	_AQQPHIAGV_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	460.751059	919.487565	-0.082443	-3.7986E-05	-4.1439	-0.0019093	-4.2264	-0.0019473	460.7519141765212	38.729	0.52579	38.504	38.177	38.702	-0.2257	-0.048778	-0.0043907	NaN	85.359	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98999			3785	1191	2183	2194							0.0246003395752723
AQQPTAVQV	9	Unmodified	_AQQPTAVQV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2560729980469	2	471.256174	940.497795	-0.32039	-0.00015099	0.11911	5.613E-05	-0.20128	-9.4856E-05	471.25609525611077	44.608	0.99905	44.608	44.247	45.246	0					75	28	4	0	0	0	0.17845	2	4281	4270;4281		93.143	15.826	1	3730600			3786	1333	2184	2195	5142;5143	5143					0.025165968920873638
AQQPTAVQV	9	Unmodified	_AQQPTAVQV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2563781738281	2	471.256174	940.497795	-0.66154	-0.00031176	0.43998	0.00020734	-0.22156	-0.00010441	471.2562488597971	44.77	0.99105	44.621	44.222	45.214	-0.1488					67	28	4	0	0	0	0.17845	1	4277	4277		93.143	24.659	1	3680100			3787	1333	2184	2195	5144	5144					0.025165968920873638
AQQPTAVQV	9	Unmodified	_AQQPTAVQV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC;ENST00000424419.6_1_1:41157373-41232429:+|nuORF	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2557678222656	2	471.256174	940.497795	0.21941	0.0001034	-0.4876	-0.00022978	-0.26819	-0.00012639	471.2558087949329	44.608	0.86697	44.645	44.306	45.173	0.0369					67	24	4	0	0	0	0.37611	1	4212	4212		67.494	6.5217	1	3576800			3788	1333	2184	2195	5145	5145					0.025165968920873638
AQQRRLKILLL	11	Unmodified	_AQQRRLKILLL_					0	0	0			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7667236328125	3	451.301389	1350.88234	-0.49685	-0.00022423	-0.11075	-4.9981E-05	-0.6076	-0.00027421	451.2997173850757	35.192	0.14988	35.005	34.911	35.061	-0.18675					6	3	2	0	0	0	0.024828	1	2631	2631		13.508	0	1	32118	+		3789	20171	2185	2196	5146	5146					0.2209325971027738
AQQVRKTA	8	Unmodified	_AQQVRKTA_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant;ENST00000535804.1_1_12:6637788-6638275:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.61981201171875	2	451.264333	900.514114	-0.17741	-8.0059E-05	0.92998	0.00041967	0.75257	0.00033961	451.2646858816045	17.669	0.44903	17.462	17.315	17.764	-0.20669					10	8	2	0	0	0	0.027866	1	223	223		17.365	2.7009	1	18235			3790	872	2186	2197	5147	5147					0.059877228488517176
AQRAGLFMK	9	Unmodified	_AQRAGLFMK_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2861022949219	2	511.284211	1020.55387	-0.51407	-0.00026284	3.844	0.0019654	3.3299	0.0017025	511.2861331183895	27.755	0.93769	27.742	27.427	28.365	-0.012983					64	23	4	0	0	0	0.67308	1	1546	1546		47.916	5.4411	1	2907200			3791	2047	2187	2198	5148	5148					0.044415265279099
AQRAGLFMK	9	Unmodified	_AQRAGLFMK_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2859191894531	2	511.284211	1020.55387	-0.96956	-0.00049572	4.3361	0.002217	3.3665	0.0017212	511.2863838346492	27.546	1.0101	27.627	27.319	28.329	0.081293					65	25	4	0	0	0	0.52323	2	1470	1470;1484		57.811	4.6336	1	3250300			3792	2047	2187	2198	5149;5150	5149					0.044415265279099
AQRAGLFMK	9	Unmodified	_AQRAGLFMK_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	511.284211	1020.55387	-0.8468	-0.00043296	4.1967	0.0021457	3.3499	0.0017128	511.2863201369854	27.783	1.0552	27.783	27.435	28.49	0	0.065292	3.6165E-05	NaN	57.811	64	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2592500			3793	2047	2187	2198							0.044415265279099
AQRGKPKN	8	Unmodified	_AQRGKPKN_					0	0	0			REV__ENSG00000011007|ENST00000613537|ELOA	REV__ENSG00000011007|ENST00000613537|ELOA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.765625	2	449.764501	897.514448	0.60039	0.00027003	2.9301	0.0013179	3.5305	0.0015879	449.7655423932723	72.568	0.97142	72.578	72.21	73.181	0.0097733					53	23	3	0	0	0	0.94517	1	8790	8790		45.952	1.8352	1	1677300	+		3794	19914	2188	2199	5151	5151					0.06159142568697007
AQRLETQV	8	Unmodified	_AQRLETQV_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7616271972656	2	472.761623	943.508694	0.046021	2.1757E-05	-0.43449	-0.00020541	-0.38847	-0.00018365	472.76137701743335	32.686	1.2722	32.686	32.149	33.421	0					79	33	6	0	0	0	0.2677	4	2286	2276;2286;2298;2310		125.81	35.444	1	9736900			3795	9931	2189	2200	5152;5153;5154;5155	5153					0.034679992663768644
AQRLETQV	8	Unmodified	_AQRLETQV_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7618408203125	2	472.761623	943.508694	-0.089805	-4.2456E-05	-0.38074	-0.00018	-0.47054	-0.00022245	472.76142763221316	32.566	1.2445	32.578	31.984	33.228	0.011799					77	32	5	0	0	0	0.20995	4	2264	2241;2252;2264;2278		138.83	56.52	1	9799100			3796	9931	2189	2200	5156;5157;5158;5159	5158					0.034679992663768644
AQRLETQV	8	Unmodified	_AQRLETQV_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.761474609375	2	472.761623	943.508694	0.17368	8.2109E-05	-0.60826	-0.00028756	-0.43458	-0.00020545	472.76129026860235	32.361	1.3872	32.424	31.76	33.147	0.062885					92	35	6	0	0	0	0.2677	4	2182	2171;2182;2194;2207		125.81	40.455	1	9512100			3797	9931	2189	2200	5160;5161;5162;5163	5161					0.034679992663768644
AQRLETQV	8	Unmodified	_AQRLETQV_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.761623	943.508694	-0.44323	-0.00020954	-6.7732	-0.0032021	-7.2165	-0.0034117	472.75662566646577	32.638	0.36358	32.481	32.323	32.687	-0.15772	-0.061782	-0.005906	NaN	138.83	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46590			3798	9931	2189	2200							0.034679992663768644
AQRLTLAKV	9	Unmodified	_AQRLTLAKV_					0	0	0		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.319091796875	2	500.319109	998.623664	-0.060514	-3.0276E-05	-0.57727	-0.00028882	-0.63778	-0.0003191	500.3187676607586	42.388	0.76657	42.265	41.998	42.765	-0.12299					42	19	3	0	0	0	0.82115	1	3818	3818		37.812	0.65241	1	1739800			3799	919	2190	2201	5164	5164					0.12429728468168832
AQRSRSYR	8	Unmodified	_AQRSRSYR_					0	0	0			REV__NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant	REV__NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.77978515625	2	512.275764	1022.53697	-0.47445	-0.00024305	0.89102	0.00045645	0.41657	0.0002134	512.2762387777206	32.112	0.63033	32.124	31.782	32.413	0.011799					35	15	4	0	0	0	0.027866	1	2134	2134		42.396	9.5837	1	533860	+		3800	37291	2191	2202	5165	5165					0.02660741966326441
AQSALQPIP	9	Unmodified	_AQSALQPIP_					0	0	0		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ENST00000484991.1_1_12:111890618-111891658:-|nuORF;ENST00000482777.5_1_12:111891376-111891658:-|nuORF;nc|ENSG00000204842|Q99700-5|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7730407714844	2	462.761092	923.507631	1.1925	0.00055186	-2.6458	-0.0012244	-1.4533	-0.00067251	462.75988304294265	98.453	0.85239	98.451	98.182	99.034	-0.0020752					42	19	4	0	0	0	0.02435	1	12497	12497		60.972	13.056	1	255580			3801	10380	2192	2203	5166	5166					0.04281784897466423
AQSARRTVGPR	11	Unmodified	_AQSARRTVGPR_					0	0	0		ENST00000587885.1_1_19:13264668-13264737:+|nuORF;IER2|p.P164Sfs*84|1|0.25|ENSG00000160888|chr19:13153669-13153670|-/C|frameshift_variant	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.23046875	3	400.230294	1197.66905	0.83763	0.00033525	-1.2659	-0.00050667	-0.42831	-0.00017142	400.22992138935825	22.077	1.5417	22.077	21.537	23.079	0					111	32	5	0	0	0	0.59114	2	743	721;743		70.412	15.328	1	7007000			3802	17278	2193	2204	5167;5168	5168					0.0781234698326898
AQSARRTVGPR	11	Unmodified	_AQSARRTVGPR_					0	0	0		ENST00000587885.1_1_19:13264668-13264737:+|nuORF;IER2|p.P164Sfs*84|1|0.25|ENSG00000160888|chr19:13153669-13153670|-/C|frameshift_variant	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.23052978515625	3	400.230294	1197.66905	0.24092	9.6422E-05	-0.58922	-0.00023582	-0.3483	-0.0001394	400.230197241662	22.087	1.5775	22.011	21.56	23.137	-0.075296					119	33	6	0	0	0	0.37749	2	766	727;766		84.31	20.884	1	6459900			3803	17278	2193	2204	5169;5170	5170					0.0781234698326898
AQSARRTVGPR	11	Unmodified	_AQSARRTVGPR_					0	0	0		ENST00000587885.1_1_19:13264668-13264737:+|nuORF;IER2|p.P164Sfs*84|1|0.25|ENSG00000160888|chr19:13153669-13153670|-/C|frameshift_variant	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.23040771484375	3	400.230294	1197.66905	1.79	0.00071642	-2.0279	-0.00081165	-0.23792	-9.5222E-05	400.2295883128697	21.979	1.5639	22.051	21.546	23.11	0.071487					115	32	6	0	0	0	0.40024	1	700	700		82.831	32.797	1	6027300			3804	17278	2193	2204	5171	5171					0.0781234698326898
AQSARRTVGPR	11	Unmodified	_AQSARRTVGPR_					0	0	0		ENST00000587885.1_1_19:13264668-13264737:+|nuORF;IER2|p.P164Sfs*84|1|0.25|ENSG00000160888|chr19:13153669-13153670|-/C|frameshift_variant	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	400.230294	1197.66905	1.0987	0.00043973	1.6169	0.00064713	2.7156	0.0010869	400.2300580471322	22.259	0.51142	22.07	21.769	22.281	-0.18894	-0.012425	0.0034102	NaN	84.31	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67920			3805	17278	2193	2204							0.0781234698326898
AQSARRTVGPR	11	Unmodified	_AQSARRTVGPR_					0	0	0		ENST00000587885.1_1_19:13264668-13264737:+|nuORF;IER2|p.P164Sfs*84|1|0.25|ENSG00000160888|chr19:13153669-13153670|-/C|frameshift_variant	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	ENST00000587885.1_1_19:13264668-13264737:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.230294	1197.66905	-0.21773	-8.7141E-05	2.5536	0.001022	2.3359	0.00093489	400.23045549497425	22.405	0.84625	22.203	21.76	22.607	-0.20199	0.12053	0.0045349	NaN	84.31	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49005			3806	17278	2193	2204							0.0781234698326898
AQSATTAKGGL	11	Unmodified	_AQSATTAKGGL_					0	0	0			REV__ENSG00000149257|ENST00000358171|SERPINH1	REV__ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7507629394531	2	502.772188	1003.52982	-0.30532	-0.00015351	-1.2417	-0.00062428	-1.547	-0.00077779	502.77172017285636	34.031	0.7364	34.031	33.816	34.552	0					28	18	2	0	0	0	0.024768	1	2508	2508		47.657	26.71	1	2440200	+		3807	24664	2194	2205	5172	5172					0.028199645752465585
AQSDISCRS	9	Unmodified	_AQSDISCRS_					0	0	0			REV__ENSG00000055813|ENST00000407595|CCDC85A	REV__ENSG00000055813|ENST00000407595|CCDC85A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.23736572265625	2	483.719098	965.423644	-0.41341	-0.00019997	-2.8136	-0.001361	-3.2271	-0.001561	483.7165433685547	40.463	0.46957	40.314	40.04	40.51	-0.1497					24	12	3	0	0	0	0.024344	1	3532	3532		37.812	13.609	1	2878400	+		3808	20207	2195	2206	5173	5173					-0.06045114261735307
AQSGFPLRV	9	Unmodified	_AQSGFPLRV_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.77471923828125	2	487.774534	973.534515	-0.011095	-5.412E-06	0.25096	0.00012241	0.23986	0.000117	487.77438473566474	55.978	0.85082	55.978	55.5	56.351	0					40	23	3	0	0	0	0.22902	3	6219	6208;6219;6231		85.161	10.926	1	5400500			3809	4911	2196	2207	5174;5175;5176	5175					0.04668893508653582
AQSGFPLRV	9	Unmodified	_AQSGFPLRV_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7742919921875	2	487.774534	973.534515	-0.29011	-0.00014151	0.58537	0.00028553	0.29526	0.00014402	487.7745033458202	56.091	0.91713	55.935	55.404	56.321	-0.15601					51	24	4	0	0	0	0.26966	3	6211	6190;6199;6211		79.713	10.836	1	5640700			3810	4911	2196	2207	5177;5178;5179	5179					0.04668893508653582
AQSGFPLRV	9	Unmodified	_AQSGFPLRV_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7742614746094	2	487.774534	973.534515	-1.1989	-0.00058481	1.6427	0.00080127	0.44377	0.00021646	487.7749301572532	55.763	0.95157	55.861	55.294	56.246	0.098015					53	25	4	0	0	0	0.26966	2	6091	6091;6101		79.713	10.926	1	5196600			3811	4911	2196	2207	5180;5181	5180					0.04668893508653582
AQSKATVRP	9	Unmodified	_AQSKATVRP_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1;nc|ENSG00000122735|Q9UI46-2|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2775573730469	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.72494	2	10250	10202;10250		44.377	7.2181	1	7774800			3812	3940	2197	2208	5182;5183	5183					0.06031992020314192
AQSKATVRP	9	Unmodified	_AQSKATVRP_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1;nc|ENSG00000122735|Q9UI46-2|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27716064453125	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.84115	1	10173	10173		36.447	0.82846	1	7158600			3813	3940	2197	2208	5184	5184					0.06031992020314192
AQSLSPEPLP	10	Unmodified	_AQSLSPEPLP_					0	0	0		ENST00000534188.1_1_11:6423796-6426005:-|nuORF;ENST00000533407.6_1_11:6422737-6440257:-|nuORF;ENST00000526925.6_1_11:6422737-6426086:-|nuORF;nc|ENSG00000166313|O00213-4|APBB1;nc|ENSG00000166313|O00213-6|APBB1;nc|ENSG00000166313|O00213-3|APBB1;nc|ENSG00000166313|O00213-5|APBB1;nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	ENST00000534188.1_1_11:6423796-6426005:-|nuORF	ENST00000534188.1_1_11:6423796-6426005:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7793579101562	2	519.776939	1037.53933	-0.24713	-0.00012845	-1.3505	-0.00070194	-1.5976	-0.00083039	519.775406720794	51.535	0.48061	51.535	51.323	51.803	0					30	13	3	0	0	0	0.03519	1	5481	5481		36.447	0	1	329080			3814	7539	2198	2209	5185	5185					0.022057328607616
AQSQVGSVSL	10	Unmodified	_AQSQVGSVSL_					0	0	0			REV__ENST00000563104.5_1_16:71841975-71842665:-|nuORF	REV__ENST00000563104.5_1_16:71841975-71842665:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2587585449219	2	488.258914	974.503274	-0.43302	-0.00021142	-0.22496	-0.00010984	-0.65798	-0.00032126	488.25874970056265	30.866	0.75482	30.878	30.627	31.382	0.011797					53	17	5	0	0	0	0.40114	1	2020	2020		98.582	2.7668	1	3755900	+		3815	35214	2199	2210	5186	5186					0.01500275683918062
AQSRDKQIEE	10	Unmodified	_AQSRDKQIEE_					0	0	0		nc|ENSG00000136504|O95251-5|KAT7;ENSG00000136504|ENST00000259021|KAT7	nc|ENSG00000136504|O95251-5|KAT7	nc|ENSG00000136504|O95251-5|KAT7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	601.7328491210938	2	602.301841	1202.58913	-0.70537	-0.00042484	0.77111	0.00046444	0.065749	3.9601E-05	602.3023347214196	26.626	0.33194	26.458	26.262	26.594	-0.16816					12	7	2	0	0	0	0.03519	1	1405	1405		28.081	9.8194	1	95794			3816	5023	2200	2211	5187	5187					-0.004061842012106354
AQSRPQGL	8	Unmodified	_AQSRPQGL_					0	0	0		ENSG00000103091|ENST00000262144|WDR59;nc|ENSG00000103091|Q6PJI9-4|WDR59;nc|ENSG00000103091|Q6PJI9-3|WDR59	ENSG00000103091|ENST00000262144|WDR59	ENSG00000103091|ENST00000262144|WDR59	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.1900634765625	2	428.735409	855.456264	0.1386	5.9424E-05	0.066265	2.841E-05	0.20487	8.7835E-05	428.735383463647	25.072	0.69044	24.898	24.512	25.202	-0.17382					36	15	3	0	0	0	0.027866	1	1138	1138		53.351	24.202	1	347080			3817	2468	2201	2212	5188	5188					0.02275460923431183
AQSTSIQRI	9	Unmodified	_AQSTSIQRI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2801818847656	2	502.28018	1002.54581	-0.44932	-0.00022568	0.067175	3.3741E-05	-0.38214	-0.00019194	502.28017505914903	34.704	1.0355	34.704	34.129	35.164	0					71	26	5	0	0	0	0.034407	2	2606	2606;2618		138.06	50.366	1	2542700			3818	4246	2202	2213	5189;5190	5189					0.04463670812140208
AQSTSIQRI	9	Unmodified	_AQSTSIQRI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2796630859375	2	502.28018	1002.54581	-0.38134	-0.00019154	-0.084982	-4.2685E-05	-0.46632	-0.00023422	502.28008728286704	34.525	0.80967	34.521	34.112	34.922	-0.0045624					60	20	5	0	0	0	0.056725	2	2573	2561;2573		126.24	38.546	1	2389400			3819	4246	2202	2213	5191;5192	5192					0.04463670812140208
AQSTSIQRI	9	Unmodified	_AQSTSIQRI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2799987792969	2	502.28018	1002.54581	-0.74527	-0.00037434	0.60094	0.00030184	-0.14433	-7.2495E-05	502.2804412772526	34.456	1.002	34.506	34.089	35.091	0.050255					71	25	5	0	0	0	0.034407	2	2522	2522;2532		138.06	47.693	1	2327000			3820	4246	2202	2213	5193;5194	5193					0.04463670812140208
AQSTSIQRI	9	Unmodified	_AQSTSIQRI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.28018	1002.54581	-0.30023	-0.0001508	5.9103	0.0029686	5.6101	0.0028178	502.28325958696354	34.313	0.16211	34.313	34.209	34.371	0	-0.13368	0.0055839	NaN	138.06	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31937			3821	4246	2202	2213							0.04463670812140208
AQSTSIQRI	9	Unmodified	_AQSTSIQRI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.28018	1002.54581	-1.0229	-0.0005138	3.4473	0.0017315	2.4244	0.0012177	502.2813045124561	35.045	0.14393	35.023	34.941	35.085	-0.021767	0.15937	0.003353	NaN	138.06	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43813			3822	4246	2202	2213							0.04463670812140208
AQTFLSEI	8	Unmodified	_AQTFLSEI_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF;ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000130511|Q9BWG4-2|SSBP4;ENSG00000130511|ENST00000270061|SSBP4;ENST00000456143.1_22:16404699-16405137:+|nuORF	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7400817871094	2	454.739825	907.465098	1.1639	0.00052927	-0.96174	-0.00043734	0.20216	9.1931E-05	454.73928148254384	74.686	0.92937	74.686	74.34	75.269	0					58	22	4	0	0	0	0.11227	3	9158	9144;9158;9170		157.21	50.793	1	2081400			3823	5825	2203	2214	5195;5196;5197	5196					0.007663897692395949
AQTFLSEI	8	Unmodified	_AQTFLSEI_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF;ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000130511|Q9BWG4-2|SSBP4;ENSG00000130511|ENST00000270061|SSBP4;ENST00000456143.1_22:16404699-16405137:+|nuORF	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7398376464844	2	454.739825	907.465098	0.28288	0.00012864	-0.12578	-5.7199E-05	0.15709	7.1436E-05	454.7396430324381	74.981	0.92494	74.722	74.327	75.252	-0.25887					57	22	5	0	0	0	0.05872	2	9149	9149;9162		172.03	52.474	1	2145500			3824	5825	2203	2214	5198;5199	5198					0.007663897692395949
AQTFLSEI	8	Unmodified	_AQTFLSEI_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF;ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000130511|Q9BWG4-2|SSBP4;ENSG00000130511|ENST00000270061|SSBP4;ENST00000456143.1_22:16404699-16405137:+|nuORF	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7400817871094	2	454.739825	907.465098	-0.12698	-5.7744E-05	0.28335	0.00012885	0.15636	7.1105E-05	454.73982865601005	74.719	0.85231	74.729	74.397	75.25	0.010376					53	20	4	0	0	0	0.15677	2	9086	9073;9086		147.69	32.234	1	1942400			3825	5825	2203	2214	5200;5201	5201					0.007663897692395949
AQTFVDSSST	10	Unmodified	_AQTFVDSSST_					0	0	0			REV__ENST00000509818.5_1_4:119687763-119745832:-|nuORF	REV__ENST00000509818.5_1_4:119687763-119745832:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7378540039062	2	521.738011	1041.46147	-0.60857	-0.00031751	0.55369	0.00028888	-0.054878	-2.8632E-05	521.738218172271	62.223	0.54482	61.996	61.611	62.156	-0.22663					28	14	2	0	0	0	0.64538	1	7196	7196		71.877	5.4482	1	4385800	+		3826	34089	2204	2215	5202	5202					-0.05760324795255656
AQTLQRLL	8	Unmodified	_AQTLQRLL_					0	0	0		ENST00000548852.5_1_12:96397735-96429337:-|nuORF	ENST00000548852.5_1_12:96397735-96429337:-|nuORF	ENST00000548852.5_1_12:96397735-96429337:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.261474609375	2	471.790184	941.565815	0.67712	0.00031946	-0.32998	-0.00015568	0.34713	0.00016377	471.7898154094353	25.524	0.67272	25.604	25.336	26.008	0.08009					31	15	3	0	0	0	0.027866	1	1217	1217		45.952	15.448	1	679190			3827	16559	2205	2216	5203	5203					0.0926946654275298
AQTMQAPSL	9	Oxidation (M)	_AQTM(Oxidation (M))QAPSL_		AQTM(1)QAPSL		AQTM(100)QAPSL	0	0	1		ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.73248291015625	2	481.734217	961.453881	0.1118	5.3858E-05	-3.6896	-0.0017774	-3.5778	-0.0017236	481.73241627706994	57.282	2.588	57.282	56.745	59.333	0					166	70	5	0	0	0	0.14024	1	6421	6421		101.6	7.5943	1	18734000			3828	9053	2206	2217	5204	5204		378			-0.028387555965423417
AQVERYVPE	9	Unmodified	_AQVERYVPE_					0	0	0		ENST00000534656.2_1_11:118868886-118869820:+|nuORF;ENST00000524670.5_1_11:118869052-118882689:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC	ENST00000534656.2_1_11:118868886-118869820:+|nuORF	ENST00000534656.2_1_11:118868886-118869820:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3024291992188	2	545.780013	1089.54547	-0.64997	-0.00035474	4.2398	0.002314	3.5898	0.0019592	545.7823276790771	64.513	0.92316	64.513	64.168	65.091	0					68	24	4	0	0	0	0.024261	1	7619	7619		54.776	8.8041	1	3101000			3829	9522	2207	2218	5205	5205					0.0042825109228488145
AQVKGHGAKV	10	Unmodified	_AQVKGHGAKV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.79296875	2	497.793258	993.571963	0.77032	0.00038346	-0.94319	-0.00046951	-0.17287	-8.6053E-05	497.7926751618893	20.764	0.44246	20.833	20.612	21.054	0.068901					19	8	3	0	0	0	0.96965	1	536	536		49.442	1.5259	1	98630		+	3830	500	2208	2219	5206	5206					0.07491984774276261
AQVKGHGAKV	10	Unmodified	_AQVKGHGAKV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.793258	993.571963	-0.78424	-0.00039039	0.40323	0.00020073	-0.38101	-0.00018966	497.7932929749138	20.777	0.48256	20.777	20.516	20.998	0	-0.036923	0.00070386	NaN	49.442	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97876		+	3831	500	2208	2219							0.07491984774276261
AQVKGHGAKV	10	Unmodified	_AQVKGHGAKV_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.793258	993.571963	-0.46423	-0.00023109	0.13223	6.5825E-05	-0.33199	-0.00016526	497.7930274051303	20.923	0.4755	20.831	20.582	21.058	-0.091787	0.017407	0.00043406	NaN	49.442	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106010		+	3832	500	2208	2219							0.07491984774276261
AQVKRTLKS	9	Unmodified	_AQVKRTLKS_					0	0	0			REV__nc|ENSG00000130779|P30622-2|CLIP1	REV__nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2608642578125	2	515.822015	1029.62948	-1.4944	-0.00077082	-1.5601	-0.00080471	-3.0544	-0.0015755	515.821495227494	30.01	0.20082	30.01	29.936	30.137	0					7	4	2	0	0	0	0.024541	1	1889	1889		10.866	0	1	18437	+		3833	23156	2209	2220	5207	5207					0.11584826979856189
AQVLIRVE	8	Unmodified	_AQVLIRVE_					0	0	0			REV__nc|ENSG00000171723|Q9NQX3|GPHN	REV__nc|ENSG00000171723|Q9NQX3|GPHN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2503662109375	2	464.284734	926.554916	-0.54217	-0.00025172	-1.5833	-0.0007351	-2.1255	-0.00098682	464.2835782475762	47.85	0.25342	47.85	47.653	47.906	0					13	7	2	0	0	0	0.027866	1	4820	4820		26.693	0	1	734380	+		3834	26594	2210	2221	5208	5208					0.08870064168468161
AQVMAPKPPF	10	Unmodified	_AQVMAPKPPF_					0	0	0		ENST00000483439.1_1_6:112375437-112376017:+|nuORF	ENST00000483439.1_1_6:112375437-112376017:+|nuORF	ENST00000483439.1_1_6:112375437-112376017:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7761840820312	2	543.294245	1084.57394	-0.71026	-0.00038588	3.8255	0.0020784	3.1152	0.0016925	543.2963733251914	67.269	0.81456	67.269	66.714	67.528	0					37	19	3	0	0	0	0.03519	1	8062	8062		29.15	4.9468	1	411890			3835	15283	2211	2222	5209	5209					0.0350327746784842
AQVNLKYLL	9	Unmodified	_AQVNLKYLL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3218383789062	2	531.321317	1060.62808	-0.62183	-0.00033039	0.052784	2.8045E-05	-0.56905	-0.00030235	531.3212471340637	67.371	0.70612	67.371	67.049	67.755	0					30	17	2	0	0	0	0.35646	1	8042	8042		68.787	25.923	1	1679700			3836	5688	2212	2223	5210	5210					0.10019192891104467
AQVNLKYLL	9	Unmodified	_AQVNLKYLL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3224487304688	2	531.321317	1060.62808	-0.3712	-0.00019722	-0.14545	-7.728E-05	-0.51664	-0.0002745	531.3211545986748	67.697	0.7532	67.409	67.148	67.901	-0.28834					32	18	2	0	0	0	0.4752	1	8061	8061		60.972	15.02	1	1469600			3837	5688	2212	2223	5211	5211					0.10019192891104467
AQVNLKYLL	9	Unmodified	_AQVNLKYLL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.321317	1060.62808	-0.052315	-2.7796E-05	-0.64085	-0.0003405	-0.69317	-0.00036829	531.3209590314091	67.569	1.0119	67.593	67.191	68.203	0.023911	0.13506	-0.00037782	NaN	68.787	83	25	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1714900			3838	5688	2212	2223							0.10019192891104467
AQVPGLRSL	9	Unmodified	_AQVPGLRSL_					0	0	0		ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2933044433594	2	470.782359	939.550165	0.49263	0.00023192	-0.16642	-7.8348E-05	0.32621	0.00015357	470.78200372117146	52.868	0.91475	52.963	52.641	53.556	0.095669					39	24	3	0	0	0	0.024292	1	5593	5593		58.782	0	1	2073500			3839	4063	2213	2224	5212	5212					0.07797180025715988
AQVQLNLQV	9	Unmodified	_AQVQLNLQV_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.74554443359375	2	506.792924	1011.57129	-0.51982	-0.00026344	1.1021	0.00055855	0.5823	0.00029511	506.7936130316584	82.127	0.9531	82.127	81.711	82.664	0					38	22	3	0	0	0	0.024405	1	10253	10253		53.351	16.192	1	250040	+		3840	36503;20881	2214	2225	5213	5213					0.06597145334558263
AQVSAVHI	8	Unmodified	_AQVSAVHI_					0	0	0		nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.7346496582031	2	412.734877	823.455202	0.99979	0.00041265	-0.72653	-0.00029987	0.27326	0.00011278	412.73443669220296	41.406	1.0859	41.406	40.835	41.921	0					73	30	4	0	0	0	0.34573	1	3731	3731		104.75	33.451	1	1905900			3841	6634	2215	2226	5214	5214					0.03641246554514055
AQVSAVHI	8	Unmodified	_AQVSAVHI_					0	0	0		nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	412.734877	823.455202	0.38807	0.00016017	-0.1454	-6.0012E-05	0.24267	0.00010016	412.7346604011777	41.56	1.1288	41.437	40.833	41.962	-0.12318	-0.029827	0.00016881	NaN	104.75	63	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1731700			3842	6634	2215	2226							0.03641246554514055
AQVSAVHI	8	Unmodified	_AQVSAVHI_					0	0	0		nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	412.734877	823.455202	0.35477	0.00014643	-0.06388	-2.6365E-05	0.29089	0.00012006	412.73468794698925	41.534	1.1225	41.557	40.899	42.021	0.023006	0.09067	0.00023611	NaN	104.75	59	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1900700			3843	6634	2215	2226							0.03641246554514055
AQVWSAEAGGT	11	Unmodified	_AQVWSAEAGGT_					0	0	0			REV__ENST00000533220.1_1_11:58907531-58910123:-|nuORF	REV__ENST00000533220.1_1_11:58907531-58910123:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	538.7534790039062	2	538.753995	1075.49344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.36	1	110.35	109.85	110.85	-0.009491								0	0	0	1.4308	1	13938	13938		19.104	0	1		+		3844	34597	2216	2227	5215	5215					-0.041289123214710344
AQWGSRGKV	9	Unmodified	_AQWGSRGKV_					0	0	0			REV__ENST00000478406.5_1_1:227171123-227171438:+|nuORF	REV__ENST00000478406.5_1_1:227171123-227171438:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.76910400390625	2	494.769783	987.525013	-0.46615	-0.00023064	-0.011993	-5.9337E-06	-0.47815	-0.00023657	494.7696594063993	47.439	0.51045	47.342	47.083	47.594	-0.096649					34	13	3	0	0	0	0.5973	1	4640	4640		52.937	5.0211	1	1566400	+		3845	33367	2217	2228	5216	5216					0.03075125223131181
AQWGSRGKV	9	Unmodified	_AQWGSRGKV_					0	0	0			REV__ENST00000478406.5_1_1:227171123-227171438:+|nuORF	REV__ENST00000478406.5_1_1:227171123-227171438:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	494.769783	987.525013	-0.46615	-0.00023064	-0.011993	-5.9337E-06	-0.47815	-0.00023657	494.7696594063993	47.439	0.51045	47.342	47.083	47.594	-0.096649	-0.034557	0.00025684	NaN	52.937	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1566400	+		3846	33367	2217	2228							0.03075125223131181
AQWWAWNI	8	Unmodified	_AQWWAWNI_					0	0	0			REV__AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|2|1|sense	REV__AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|2|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.278564453125	2	537.761426	1073.5083	-0.80399	-0.00043236	-0.4775	-0.00025678	-1.2815	-0.00068914	537.7612042036097	25.294	0.60806	25.067	24.623	25.231	-0.22683					17	13	2	0	0	0	0.027866	1	1139	1139		31.955	0	1	35665	+		3847	19129	2218	2229	5217	5217					-0.025513756628242845
AQYEHDLEV	9	Unmodified	_AQYEHDLEV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000413691.2_1_4:174554896-174555010:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.2534790039062	2	552.253828	1102.4931	-0.18254	-0.00010081	-1.1206	-0.00061885	-1.3031	-0.00071966	552.2532583301389	45.938	1.9157	45.938	45.613	47.529	0					158	53	6	0	0	0	0.067814	8	4519	4475;4483;4495;4507;4519;4531;4544;4559		122.18	61.204	1	64395000			3848	4594	2219	2230	5218;5219;5220;5221;5222;5223;5224;5225	5222					-0.05404332041325688
AQYEHDLEV	9	Unmodified	_AQYEHDLEV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000413691.2_1_4:174554896-174555010:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.2535400390625	2	552.253828	1102.4931	-1.266	-0.00069915	0.11714	6.4693E-05	-1.1488	-0.00063445	552.2539223273025	46.023	1.6876	45.872	45.544	47.232	-0.15156					154	46	6	0	0	0	0.027092	8	4531	4471;4484;4495;4507;4519;4531;4545;4559		143.89	76.925	1	57142000			3849	4594	2219	2230	5226;5227;5228;5229;5230;5231;5232;5233	5231					-0.05404332041325688
AQYEHDLEV	9	Unmodified	_AQYEHDLEV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000413691.2_1_4:174554896-174555010:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.25341796875	2	552.253828	1102.4931	-0.38401	-0.00021207	-0.74316	-0.00041041	-1.1272	-0.00062248	552.2534764421259	45.929	1.6579	45.981	45.689	47.346	0.051399					155	46	7	0	0	0	0.03849	8	4420	4411;4420;4432;4444;4456;4468;4480;4496		134.81	66.024	1	63176000			3850	4594	2219	2230	5234;5235;5236;5237;5238;5239;5240;5241	5235					-0.05404332041325688
AQYEHDLEV	9	Unmodified	_AQYEHDLEV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000413691.2_1_4:174554896-174555010:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.253828	1102.4931	-0.22953	-0.00012676	-6.6452	-0.0036698	-6.8747	-0.0037966	552.2484301494854	46.252	1.9485	45.99	45.593	47.542	-0.26118	0.050874	-0.0068542	NaN	143.89	76	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1192900			3851	4594	2219	2230							-0.05404332041325688
AQYEHDLEV	9	Unmodified	_AQYEHDLEV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000413691.2_1_4:174554896-174555010:-|nuORF;ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.253828	1102.4931	-0.86984	-0.00048037	-1.9518	-0.0010779	-2.8216	-0.0015582	552.2524725138438	46.128	0.59388	45.926	45.563	46.157	-0.20226	-0.01386	-0.0016703	NaN	143.89	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1790500			3852	4594	2219	2230							-0.05404332041325688
AQYENPPHI	9	Unmodified	_AQYENPPHI_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.7594604492188	2	534.759081	1067.50361	-1.3312	-0.00071186	0.85766	0.00045864	-0.47352	-0.00025322	534.7594714912666	43.545	0.68599	43.545	43.224	43.91	0					42	18	3	0	0	0	0.091713	1	4097	4097		113.41	58.635	1	1932700			3853	5555;6601	2220	2231	5242	5242					-0.027443045962399992
AQYENPPHI	9	Unmodified	_AQYENPPHI_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.759081	1067.50361	-1.2594	-0.00067347	0.80317	0.0004295	-0.45622	-0.00024397	534.7594406790375	43.732	0.7524	43.587	43.241	43.994	-0.14471	-0.036262	0.00017856	NaN	113.41	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2171200			3854	5555;6601	2220	2231							-0.027443045962399992
AQYENPPHI	9	Unmodified	_AQYENPPHI_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.759081	1067.50361	-0.45007	-0.00024068	0.14447	7.7254E-05	-0.3056	-0.00016342	534.7590080491822	43.604	0.79935	43.634	43.267	44.066	0.030827	0.010768	-0.00052593	NaN	113.41	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2090500			3855	5555;6601	2220	2231							-0.027443045962399992
AQYENPPHI	9	Unmodified	_AQYENPPHI_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.759081	1067.50361	-1.3271	-0.00070967	0.24049	0.0001286	-1.0866	-0.00058106	534.7588545528919	43.883	0.51971	43.638	43.31	43.829	-0.2444	0.014564	-0.00042323	NaN	113.41	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139830			3856	5555;6601	2220	2231							-0.027443045962399992
AQYENPPHI	9	Unmodified	_AQYENPPHI_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F;ENSG00000157483|ENST00000288235|MYO1E	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.759081	1067.50361	-1.3989	-0.00074809	0.73466	0.00039287	-0.66428	-0.00035523	534.7594631559938	43.933	0.37415	43.714	43.49	43.864	-0.21939	0.089985	0.00010529	NaN	113.41	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203150			3857	5555;6601	2220	2231							-0.027443045962399992
AQYFEPLTL	9	Unmodified	_AQYFEPLTL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.2813110351562	2	541.281857	1080.54916	-0.54108	-0.00029288	0.34579	0.00018717	-0.19529	-0.00010571	541.2819716129413	84.362	1.0892	84.362	83.91	84.999	0					74	25	5	0	0	0	0.033448	3	10552	10552;10563;10576		138.83	53.466	1	4424900			3858	5087	2221	2232	5243;5244;5245	5243					0.012109208661286175
AQYFEPLTL	9	Unmodified	_AQYFEPLTL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2813720703125	2	541.281857	1080.54916	-1.3488	-0.00073009	1.1368	0.00061531	-0.21207	-0.00011479	541.28239321404	84.359	1.0477	84.286	83.917	84.965	-0.072769					68	24	4	0	0	0	0.033448	4	10521	10512;10521;10534;10549		138.83	51.071	1	4471900			3859	5087	2221	2232	5246;5247;5248;5249	5247					0.012109208661286175
AQYFEPLTL	9	Unmodified	_AQYFEPLTL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2819213867188	2	541.281857	1080.54916	-1.188	-0.00064302	1.0341	0.00055973	-0.15387	-8.3289E-05	541.2823524462527	84.287	1.3003	84.313	83.901	85.201	0.026558					74	30	4	0	0	0	0.03849	4	10468	10457;10468;10481;10494		134.81	44.034	1	4410700			3860	5087	2221	2232	5250;5251;5252;5253	5251					0.012109208661286175
AQYFLDKI	8	Unmodified	_AQYFLDKI_					0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2715759277344	2	499.271293	996.528032	-0.74573	-0.00037232	0.25992	0.00012977	-0.4858	-0.00024255	499.27124876685957	62.002	0.53962	62.002	61.682	62.222	0					32	14	3	0	0	0	0.44952	4	7193	7193;7202;7214;7226		90.37	16.115	1	8128400			3861	1850	2222	2233	5254;5255;5256;5257	5254					0.029629555572796562
AQYFLDKI	8	Unmodified	_AQYFLDKI_					0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.27099609375	2	499.271293	996.528032	-0.5852	-0.00029217	-0.36223	-0.00018085	-0.94743	-0.00047302	499.27095770691034	62.223	0.63585	61.996	61.727	62.363	-0.22663					28	18	2	0	0	0	0.2677	4	7198	7188;7198;7212;7225		125.81	38.06	1	9264500			3862	1850	2222	2233	5258;5259;5260;5261	5259					0.029629555572796562
AQYFLDKI	8	Unmodified	_AQYFLDKI_					0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.2714538574219	2	499.271293	996.528032	-0.70107	-0.00035002	0.20857	0.00010413	-0.4925	-0.00024589	499.2712282383727	61.911	0.5401	61.974	61.661	62.201	0.062767					38	14	4	0	0	0	0.2677	4	7102	7091;7102;7119;7128		125.81	32.619	1	8282000			3863	1850	2222	2233	5262;5263;5264;5265	5263					0.029629555572796562
AQYKFVYQV	9	Unmodified	_AQYKFVYQV_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.3037109375	2	573.303124	1144.5917	-0.45307	-0.00025975	0.043858	2.5144E-05	-0.40922	-0.0002346	573.3031716893122	58.476	0.84016	58.476	58.159	58.999	0					64	22	4	0	0	0	0.014013	3	6622	6622;6633;6646		166.78	92.527	1	4991600			3864	6248	2223	2234	5266;5267;5268	5266					0.02518315994348086
AQYKFVYQV	9	Unmodified	_AQYKFVYQV_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.3031005859375	2	573.303124	1144.5917	0.25783	0.00014782	-0.76489	-0.00043851	-0.50706	-0.0002907	573.3027442424798	58.661	0.72955	58.474	58.206	58.936	-0.18705					58	19	4	0	0	0	0.014013	3	6618	6618;6632;6643		166.78	92.527	1	4829000			3865	6248	2223	2234	5269;5270;5271	5269					0.02518315994348086
AQYKFVYQV	9	Unmodified	_AQYKFVYQV_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.3028564453125	2	573.303124	1144.5917	-0.42379	-0.00024296	-0.15666	-8.9813E-05	-0.58045	-0.00033277	573.3031002240095	58.256	1.127	58.347	58.084	59.211	0.091217					72	30	4	0	0	0	0.033448	2	6528	6514;6528		138.83	65.475	1	4616900			3866	6248	2223	2234	5272;5273	5273					0.02518315994348086
AQYLINARL	9	Unmodified	_AQYLINARL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3078002929688	2	531.308741	1060.60293	0.051488	2.7356E-05	-1.6148	-0.00085798	-1.5634	-0.00083063	531.3077544987628	58.802	1.5172	58.802	58.228	59.745	0					95	34	5	0	0	0	0.033448	6	6685	6663;6673;6685;6697;6709;6722		138.83	56.52	1	28545000			3867	7950	2224	2235	5274;5275;5276;5277;5278;5279	5276					0.07505138088504282
AQYLINARL	9	Unmodified	_AQYLINARL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3077392578125	2	531.308741	1060.60293	1.1779	0.00062581	-2.5145	-0.001336	-1.3367	-0.00071019	531.3072905690176	59.034	1.4286	58.847	58.311	59.74	-0.18705					94	32	5	0	0	0	0.016871	4	6676	6665;6676;6688;6700		152.47	58.464	1	37009000			3868	7950	2224	2235	5280;5281;5282;5283	5281					0.07505138088504282
AQYLINARL	9	Unmodified	_AQYLINARL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3079833984375	2	531.308741	1060.60293	0.2679	0.00014234	-1.5875	-0.00084344	-1.3196	-0.0007011	531.3077830620852	58.637	1.4373	58.728	58.26	59.697	0.091217					98	34	5	0	0	0	0.016871	5	6567	6555;6567;6579;6591;6603		152.47	70.166	1	32068000			3869	7950	2224	2235	5284;5285;5286;5287;5288	5285					0.07505138088504282
AQYLINVRL	9	Unmodified	_AQYLINVRL_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3241577148438	2	545.324391	1088.63423	-0.45616	-0.00024876	-0.5047	-0.00027522	-0.96086	-0.00052398	545.3241566670858	68.044	1.5194	68.044	67.682	69.202	0					144	39	5	0	0	0	0.016871	6	8152	8128;8140;8152;8164;8176;8191		152.47	80.593	1	36922000			3870	9954	2225	2236	5289;5290;5291;5292;5293;5294	5291					0.09345711122591638
AQYLINVRL	9	Unmodified	_AQYLINVRL_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3245849609375	2	545.324391	1088.63423	-0.47592	-0.00025953	-0.244	-0.00013306	-0.71992	-0.00039259	545.3242770451551	68.482	2.3706	68.189	67.223	69.593	-0.29267					166	60	5	0	0	0	0.016871	5	8159	8148;8159;8171;8183;8196		152.47	84.977	1	47747000			3871	9954	2225	2236	5295;5296;5297;5298;5299	5296					0.09345711122591638
AQYLINVRL	9	Unmodified	_AQYLINVRL_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3246459960938	2	545.324391	1088.63423	-0.4215	-0.00022985	-0.22451	-0.00012243	-0.646	-0.00035228	545.3242583150344	68.198	2.1239	68.217	67.345	69.469	0.018913					166	55	5	0	0	0	0.014013	6	8069	8061;8069;8081;8093;8105;8119		166.78	89.465	1	32818000			3872	9954	2225	2236	5300;5301;5302;5303;5304;5305	5301					0.09345711122591638
AQYLITQRI	9	Unmodified	_AQYLITQRI_					0	0	0		ENSG00000139910|ENST00000539517|NOVA1;nc|ENSG00000139910|P51513-5|NOVA1	ENSG00000139910|ENST00000539517|NOVA1	ENSG00000139910|ENST00000539517|NOVA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.32177734375	2	553.321848	1104.62914	0.057393	3.1757E-05	-1.0249	-0.00056711	-0.96753	-0.00053536	553.3210783375285	68.103	0.84832	68.103	67.792	68.641	0					39	15	3	0	0	0	0.37611	1	8149	8149		67.494	5.8024	1	2615100			3873	5375	2226	2237	5306	5306					0.08101407259982807
AQYLLQNSV	9	Unmodified	_AQYLLQNSV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.276611328125	2	518.277106	1034.53966	-1.2076	-0.0006259	-0.12595	-6.5279E-05	-1.3336	-0.00069118	518.2771423187905	61.959	0.76851	61.959	61.453	62.222	0					79	20	6	0	0	0	0.010658	4	7210	7184;7197;7210;7221		275.71	135.74	1	11196000			3874	7366	2227	2238	5307;5308;5309;5310	5309					0.023771525806068894
AQYLLQNSV	9	Unmodified	_AQYLLQNSV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	OPSCC_39_ClassI_Rep-2	2	518.2762451171875	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.176	1	61.949	61.449	62.449	-0.22663								0	0	0	7.4068E-16	1	7195	7195		258.1	100.02	1				3875	7366	2227	2238	5311	5311					0.023771525806068894
AQYLLQNSV	9	Unmodified	_AQYLLQNSV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	OPSCC_39_ClassI_Rep-2	2	518.2769775390625	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.234	1	62.007	61.507	62.507	-0.22663								0	0	0	7.4068E-16	1	7205	7205		258.1	125.34	1				3876	7366	2227	2238	5312	5312					0.023771525806068894
AQYLLQNSV	9	Unmodified	_AQYLLQNSV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	OPSCC_39_ClassI_Rep-2	2	518.275390625	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.303	1	62.063	61.563	62.563	-0.23926								0	0	0	0.00068936	1	7217	7217		195.06	79.569	1				3877	7366	2227	2238	5313	5313					0.023771525806068894
AQYLLQNSV	9	Unmodified	_AQYLLQNSV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MSMS	OPSCC_39_ClassI_Rep-2	2	518.27490234375	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.381	1	62.142	61.642	62.642	-0.23926								0	0	0	0.067671	1	7230	7230		101.25	15.391	1				3878	7366	2227	2238	5314	5314					0.023771525806068894
AQYLLQNSV	9	Unmodified	_AQYLLQNSV_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2762451171875	2	518.277106	1034.53966	-1.0942	-0.00056711	-0.34371	-0.00017814	-1.4379	-0.00074524	518.2769763326947	61.861	0.69765	61.924	61.504	62.201	0.062767					65	18	5	0	0	0	0.010658	4	7114	7089;7101;7114;7126		258.1	105.06	1	10048000			3879	7366	2227	2238	5315;5316;5317;5318	5317					0.023771525806068894
AQYNPKLDV	9	Unmodified	_AQYNPKLDV_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2765502929688	2	524.277106	1046.53966	-0.69971	-0.00036684	-0.45632	-0.00023924	-1.156	-0.00060608	524.2767968528698	46.001	0.59387	46.001	45.784	46.378	0					54	16	4	0	0	0	0.020687	3	4514	4514;4526;4538		148.99	58.617	1	10107000			3880	3629	2228	2239	5319;5320;5321	5319					0.018251525805908386
AQYNPKLDV	9	Unmodified	_AQYNPKLDV_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2769775390625	2	524.277106	1046.53966	-1.1533	-0.00060467	0.27273	0.00014298	-0.88062	-0.00046169	524.2771185570034	46.055	0.52477	45.903	45.719	46.244	-0.15156					53	14	4	0	0	0	0.020687	4	4515	4504;4515;4526;4541		148.99	58.617	1	9275100			3881	3629	2228	2239	5322;5323;5324;5325	5323					0.018251525805908386
AQYNPKLDV	9	Unmodified	_AQYNPKLDV_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2769775390625	2	524.277106	1046.53966	-0.14599	-7.654E-05	-0.63644	-0.00033367	-0.78243	-0.00041021	524.2767038973965	45.962	0.5157	46.013	45.758	46.274	0.051395					58	14	5	0	0	0	0.020687	4	4464	4441;4453;4464;4477		148.99	52.796	1	9969200			3882	3629	2228	2239	5326;5327;5328;5329	5328					0.018251525805908386
AQYQFTGI	8	Unmodified	_AQYQFTGI_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.23193359375	2	464.232168	926.449782	-0.62879	-0.0002919	1.0065	0.00046725	0.37772	0.00017535	464.23249504939747	65.248	0.8933	65.248	64.944	65.837	0					67	24	4	0	0	0	0.049095	3	7729	7706;7715;7729		183.89	64.338	1	5966200			3883	8426	2229	2240	5330;5331;5332	5332					-0.016384770279614713
AQYQFTGI	8	Unmodified	_AQYQFTGI_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2317810058594	2	464.232168	926.449782	-0.55545	-0.00025786	1.0113	0.00046947	0.45583	0.00021161	464.2324982593069	65.519	1.1267	65.247	64.901	66.027	-0.27282					75	30	4	0	0	0	0.02342	4	7723	7712;7723;7736;7749		204.1	65.854	1	5275600			3884	8426	2229	2240	5333;5334;5335;5336	5334					-0.016384770279614713
AQYQFTGI	8	Unmodified	_AQYQFTGI_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2319641113281	2	464.232168	926.449782	0.43692	0.00020283	-0.035867	-1.6651E-05	0.40105	0.00018618	464.2320166826196	65.224	1.0847	65.261	64.928	66.013	0.037384					74	29	4	0	0	0	0.028986	3	7646	7621;7633;7646		200.96	81.4	1	5234900			3885	8426	2229	2240	5337;5338;5339	5339					-0.016384770279614713
AQYSTPRK	8	Unmodified	_AQYSTPRK_					0	0	0			REV__ENSG00000198768|ENST00000371149|APCDD1L	REV__ENSG00000198768|ENST00000371149|APCDD1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.7729187011719	2	475.756341	949.498129	0.5314	0.00025282	-2.4851	-0.0011823	-1.9537	-0.0009295	475.7565787167721	23.379	0.16051	23.379	23.321	23.482	0					5	3	2	0	0	0	0.027866	1	914	914		24.203	0	1	14579	+		3886	28471	2230	2241	5340	5340					0.021360166119507085
AQYYLAKL	8	Unmodified	_AQYYLAKL_					0	0	0			REV__ENSG00000089682|ENST00000685964|RBM41	REV__ENSG00000089682|ENST00000685964|RBM41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78826904296875	2	485.273835	968.533118	0.3112	0.00015102	-4.3327	-0.0021025	-4.0215	-0.0019515	485.2713503084992	47.366	0.70675	47.213	46.899	47.606	-0.15301					27	19	2	0	0	0	0.027866	1	4694	4694		71.378	4.9486	1	774470	+		3887	20858	2231	2242	5341	5341					0.04759259419893169
ARAAAVTPDH	10	Unmodified	_ARAAAVTPDH_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.8150329589844	2	504.764697	1007.51484	0.0059059	2.9811E-06	2.2795	0.0011506	2.2854	0.0011536	504.76555905061844	74.629	1.1411	74.366	74.054	75.195	-0.26326					52	26	4	0	0	0	0.03519	1	8871	8871		34.173	1.3601	1	746490			3888	5972	2232	2243	5342	5342					0.01138517497884095
ARAAFQALYSK	11	Unmodified	_ARAAFQALYSK_					0	0	0			REV__ENST00000532383.5_1_11:10821544-10823273:-|nuORF	REV__ENST00000532383.5_1_11:10821544-10823273:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	612.7982177734375	2	613.33803	1224.66151	0.3106	0.0001905	-1.2824	-0.00078655	-0.97181	-0.00059605	613.3373920150937	59.238	0.36267	58.996	58.814	59.177	-0.24165					13	8	2	0	0	0	0.024736	1	6506	6506		22.58	3.4761	1	169360	+		3889	19741	2233	2244	5343	5343					0.05816194662975249
ARAALTLSFL	10	Unmodified	_ARAALTLSFL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165893554688	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.089	1	10543	10543		34.173	1.3601	1	4521600			3890	3051	2234	2245	5344	5344					0.09498308748334239
ARAALWWHA	9	Unmodified	_ARAALWWHA_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.3084106445312	2	541.288143	1080.56173	-0.55576	-0.00030083	-2.8385	-0.0015365	-3.3943	-0.0018373	541.2865607017392	42.914	0.39793	42.774	42.558	42.956	-0.13929					19	10	2	0	0	0	0.024293	1	3977	3977		42.474	1.6963	1	127310	+		3891	28747	2235	2246	5345	5345					0.024674218397194636
ARAAPGEQSVA	11	Unmodified	_ARAAPGEQSVA_					0	0	0			REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.7742309570312	2	528.775262	1055.53597	-0.70265	-0.00037154	0.55328	0.00029256	-0.14936	-7.898E-05	528.7754670382185	32.028	0.81209	32.04	31.782	32.594	0.011799					51	20	4	0	0	0	0.40147	1	2181	2181		82.75	0.50997	1	2721600	+		3892	35225	2236	2247	5346	5346					0.0104248280676984
ARAAPGEQSVA	11	Unmodified	_ARAAPGEQSVA_					0	0	0			REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.773681640625	2	528.775262	1055.53597	-0.37144	-0.00019641	0.29513	0.00015606	-0.076313	-4.0353E-05	528.7753632166033	31.821	0.82947	31.89	31.567	32.396	0.068962					52	20	4	0	0	0	0.93459	1	2112	2112		49.536	3.5841	1	2722600	+		3893	35225	2236	2247	5347	5347					0.0104248280676984
ARAAPGEQSVA	11	Unmodified	_ARAAPGEQSVA_					0	0	0			REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	528.775262	1055.53597	-0.37144	-0.00019641	0.29513	0.00015606	-0.076313	-4.0353E-05	528.7753632166033	31.821	0.82947	31.89	31.567	32.396	0.068962	-0.1347	-0.00031702	NaN	82.75	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2722600	+		3894	35225	2236	2247							0.0104248280676984
ARAAPGEQSVA	11	Unmodified	_ARAAPGEQSVA_					0	0	0			REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.775262	1055.53597	-0.32473	-0.00017171	4.9691	0.0026275	4.6443	0.0024558	528.7779561074523	32.198	0.21748	32.04	31.861	32.079	-0.15772	0.015372	0.0046259	NaN	82.75	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34309	+		3895	35225	2236	2247							0.0104248280676984
ARAARGQGGR	10	Unmodified	_ARAARGQGGR_					0	0	0		TMEM200C|p.Q580Pfs*21|1|0.14|ENSG00000206432|chr18:5890316-5890325|GGTGGCTCCT/-|frameshift_variant;ENSG00000206432|ENST00000383490|TMEM200C	TMEM200C|p.Q580Pfs*21|1|0.14|ENSG00000206432|chr18:5890316-5890325|GGTGGCTCCT/-|frameshift_variant	TMEM200C|p.Q580Pfs*21|1|0.14|ENSG00000206432|chr18:5890316-5890325|GGTGGCTCCT/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	500.282470703125	2	500.28138	998.548208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.52	1	102.4	101.9	102.9	-0.12666								0	0	0	0.73832	1	12749	12749		35.618	1.4457	1				3896	10470	2237	2248	5348	5348					0.04887564060481964
ARAASAAIP	9	Unmodified	_ARAASAAIP_					0	0	0		ENST00000609436.1_1_10:65225004-65225142:+|nuORF	ENST00000609436.1_1_10:65225004-65225142:+|nuORF	ENST00000609436.1_1_10:65225004-65225142:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.5220031738281	2	414.240327	826.466101	1.7857	0.00073972	-1.3137	-0.0005442	0.47201	0.00019552	414.23939984592823	36.952	0.51035	36.952	36.685	37.195	0					27	12	3	0	0	0	0.023007	1	2979	2979		76.774	30.822	1	565070			3897	17605	2238	2249	5349	5349					0.045926489288035555
ARAASAAIP	9	Unmodified	_ARAASAAIP_					0	0	0		ENST00000609436.1_1_10:65225004-65225142:+|nuORF	ENST00000609436.1_1_10:65225004-65225142:+|nuORF	ENST00000609436.1_1_10:65225004-65225142:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.52203369140625	2	414.240327	826.466101	0.36743	0.00015221	0.51594	0.00021372	0.88337	0.00036593	414.2399706770283	36.772	0.69453	36.709	36.396	37.091	-0.063385					38	17	3	0	0	0	0.024294	1	2938	2938		45.952	0	1	517040			3898	17605	2238	2249	5350	5350					0.045926489288035555
ARAASAAIP	9	Unmodified	_ARAASAAIP_					0	0	0		ENST00000609436.1_1_10:65225004-65225142:+|nuORF	ENST00000609436.1_1_10:65225004-65225142:+|nuORF	ENST00000609436.1_1_10:65225004-65225142:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	414.240327	826.466101	-0.16993	-7.0392E-05	-0.098858	-4.0951E-05	-0.26879	-0.00011134	414.2401747377164	36.857	0.46904	36.895	36.648	37.117	0.038044	0.043176	0.00017745	NaN	76.774	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633950			3899	17605	2238	2249							0.045926489288035555
ARAAVLTRVL	10	Unmodified	_ARAAVLTRVL_					0	0	0		nc|ENSG00000204410|O43196-4|MSH5;ENSG00000204410|ENST00000375750|MSH5;nc|ENSG00000204410|O43196-2|MSH5;nc|ENSG00000204410|O43196-3|MSH5	nc|ENSG00000204410|O43196-4|MSH5	nc|ENSG00000204410|O43196-4|MSH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.34326171875	2	535.345658	1068.67676	-0.7049	-0.00037737	-2.9376	-0.0015726	-3.6425	-0.00195	535.343906018597	76.256	0.72273	76.256	75.956	76.678	0					40	17	4	0	0	0	1.0002	1	9403	9403		45.972	1.8554	1	1761400			3900	10344	2239	2250	5351	5351					0.14517106250832512
ARAAYTLALL	10	Unmodified	_ARAAYTLALL_					0	0	0		ENST00000341511.10_1_9:139901839-139902202:-|nuORF	ENST00000341511.10_1_9:139901839-139902202:-|nuORF	ENST00000341511.10_1_9:139901839-139902202:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8170166015625	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	1.0665	1	10912	10912		37.159	1.5408	1	3781500			3901	12496	2240	2251	5352	5352					0.09498308748334239
ARACAIFCVDE	11	Unmodified	_ARACAIFCVDE_					0	0	0		ENST00000466556.5_1_9:131588609-131591411:-|nuORF;ENSG00000198917|ENST00000361256|SPOUT1	ENST00000466556.5_1_9:131588609-131591411:-|nuORF	ENST00000466556.5_1_9:131588609-131591411:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	598.8181762695312	2	599.273183	1196.53181	-0.41752	-0.00025021	3.1684	0.0018987	2.7509	0.0016485	599.2758554815231	74.223	0.70354	73.964	73.623	74.327	-0.25887					31	16	3	0	0	0	0.024741	1	9085	9085		30.318	16.181	1	467190			3902	10249	2241	2252	5353	5353					-0.05859066002835789
ARACGFQT	8	Unmodified	_ARACGFQT_					0	0	0		ENST00000479933.2_1_1:12185996-12202585:+|nuORF	ENST00000479933.2_1_1:12185996-12202585:+|nuORF	ENST00000479933.2_1_1:12185996-12202585:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.2166442871094	2	427.202887	852.391221	-0.16323	-6.9731E-05	-1.6885	-0.00072133	-1.8517	-0.00079106	427.2020784322164	26.917	0.3886	26.76	26.629	27.018	-0.15664					11	8	2	0	0	0	0.027866	1	1409	1409		9.1829	1.4926	1	35323			3903	15183	2242	2253	5354	5354					-0.04087856874070894
ARACYGEV	8	Unmodified	_ARACYGEV_					0	0	0			REV__ENST00000374884.2_2_X:62570468-62570573:-|nuORF	REV__ENST00000374884.2_2_X:62570468-62570573:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801513671875	2	434.70272	867.390887	-0.79155	-0.00034409	0.58449	0.00025408	-0.20706	-9.0008E-05	434.7028498551937	38.07	0.44149	37.987	37.813	38.254	-0.082512					16	12	2	0	0	0	0.027866	1	3193	3193		30.504	0	1	85492	+		3904	31312	2243	2254	5355	5355					-0.048112765939322344
ARAGLGPLL	9	Unmodified	_ARAGLGPLL_					0	0	0			REV__ENST00000274063.4_1_4:154709673-154710216:-|nuORF	REV__ENST00000274063.4_1_4:154709673-154710216:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.27410888671875	2	434.27417	866.533787	0.049146	2.1343E-05	-0.263	-0.00011421	-0.21385	-9.2869E-05	434.274048688637	54.85	1.3662	54.619	54.181	55.547	-0.23087					78	38	4	0	0	0	0.33184	1	5826	5826		71.378	0	1	9281500	+		3905	29827	2244	2255	5356	5356					0.09518098859598467
ARAGPSLSGL	10	Unmodified	_ARAGPSLSGL_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.76422119140625	2	464.764166	927.513779	1.0694	0.00049703	-1.9403	-0.00090176	-0.87083	-0.00040473	464.76331159374956	33.385	0.82092	33.441	33.07	33.89	0.056568					61	21	4	0	0	0	0.94316	1	2350	2350		51.193	3.5354	1	15221000	+		3906	21526	2245	2256	5357	5357					0.047123031289856954
ARAGRQGTF	9	Unmodified	_ARAGRQGTF_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.27783203125	2	482.259582	962.504612	-0.29031	-0.00014001	-0.64701	-0.00031203	-0.93733	-0.00045203	482.2593816987272	20.154	0.73138	20.154	19.689	20.42	0					25	14	2	0	0	0	0.024457	1	474	474		37.159	8.0096	1	28727	+		3907	20051	2246	2257	5358	5358					0.021859545633333255
ARAGRSHR	8	Unmodified	_ARAGRSHR_					0	0	0		ENST00000567696.1_1_16:777755-777887:+|nuORF	ENST00000567696.1_1_16:777755-777887:+|nuORF	ENST00000567696.1_1_16:777755-777887:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.7586669921875	2	455.757541	909.500529	-0.36245	-0.00016519	3.4982	0.0015944	3.1358	0.0014292	455.7588528392663	47.101	0.68038	47.16	46.842	47.522	0.059097					41	18	4	0	0	0	0.44658	1	4645	4645		90.777	3.0224	1	3474500			3908	16964	2247	2258	5359	5359					0.04215909860272404
ARAGVALRRGP	11	Unmodified	_ARAGVALRRGP_					0	0	0		ENST00000380486.3_2_21:43362334-43373797:-|nuORF	ENST00000380486.3_2_21:43362334-43373797:-|nuORF	ENST00000380486.3_2_21:43362334-43373797:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3433837890625	2	562.343981	1122.67341	-0.75902	-0.00042683	-0.28511	-0.00016033	-1.0441	-0.00058716	562.3436714978816	89.172	2.615	89.009	88.263	90.878	-0.1626					183	62	4	0	0	0	1.0292	1	10901	10901		30.318	4.2543	1	736810			3909	13311	2248	2259	5360	5360					0.11697856196815337
ARAHPPTAK	9	Unmodified	_ARAHPPTAK_					0	0	0			REV__ENST00000607711.1_1_6:15244923-15245223:-|nuORF	REV__ENST00000607711.1_1_6:15244923-15245223:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7853088378906	2	474.772326	947.530098	0.21937	0.00010415	-1.4308	-0.0006793	-1.2114	-0.00057515	474.77142636471683	33.75	0.73906	33.745	33.486	34.225	-0.0045624					28	18	2	0	0	0	0.024495	1	2517	2517		26.693	7.3329	1	1301000	+		3910	35957	2249	2260	5361	5361					0.054234290857380074
ARAHRVLRG	9	Unmodified	_ARAHRVLRG_					0	0	0			REV__ENSG00000099624|ENST00000215375|ATP5F1D	REV__ENSG00000099624|ENST00000215375|ATP5F1D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7896118164062	2	518.317766	1034.62098	-1.0123	-0.00052471	-1.0049	-0.00052087	-2.0172	-0.0010456	518.317095699323	85.224	3.2419	85.249	83.857	87.099	0.025528					147	76	3	0	0	0	0.024381	1	10651	10651		45.952	3.5558	1	505130	+		3911	21007	2250	2261	5362	5362					0.10505317853903762
ARAHVLAVDD	10	Unmodified	_ARAHVLAVDD_					0	0	0		ENST00000606788.5_1_20:44518901-44519711:+|nuORF	ENST00000606788.5_1_20:44518901-44519711:+|nuORF	ENST00000606788.5_1_20:44518901-44519711:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8092041015625	2	533.78563	1065.55671	0.24115	0.00012872	1.7701	0.00094484	2.0112	0.0010736	533.787270583988	70.918	0.44879	70.918	70.656	71.105	0					12	10	2	0	0	0	0.03519	1	8559	8559		19.104	0	1	108080			3912	17569	2251	2262	5363	5363					0.026550731864062982
ARAKGRRA	8	Unmodified	_ARAKGRRA_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.77215576171875	2	443.278109	884.541666	-0.054126	-2.3993E-05	-1.4611	-0.00064766	-1.5152	-0.00067165	443.27664735804	52.309	0.74321	52.309	51.77	52.513	0					39	19	3	0	0	0	0.027866	1	5579	5579		25.45	6.0902	1	512560			3913	3973	2252	2263	5364	5364					0.09477670899730128
ARAKGRRA	8	Unmodified	_ARAKGRRA_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.278109	884.541666	0.29496	0.00013075	-3.3262	-0.0014744	-3.0312	-0.0013437	443.2760064221638	52.345	0.93395	52.198	51.711	52.645	-0.14735	0.044021	-0.005706	NaN	12.207	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507490			3914	3973	2252	2263							0.09477670899730128
ARAKGRRA	8	Unmodified	_ARAKGRRA_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.278109	884.541666	-0.44617	-0.00019778	-2.61	-0.001157	-3.0562	-0.0013547	443.2763095840233	52.217	0.72543	52.309	51.72	52.445	0.091938	0.15533	-0.005071	NaN	12.207	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271340			3915	3973	2252	2263							0.09477670899730128
ARAKGRRA	8	Unmodified	_ARAKGRRA_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.278109	884.541666	-0.86474	-0.00038332	3.478	0.0015417	2.6132	0.0011584	443.2792492684267	52.232	0.30732	52.113	51.974	52.282	-0.11876	-0.040429	0.00032633	NaN	12.207	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37300			3916	3973	2252	2263							0.09477670899730128
ARAKGRRA	8	Unmodified	_ARAKGRRA_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.278109	884.541666	-2.25	-0.0009974	5.3576	0.0023749	3.1076	0.0013775	443.2805088228091	52.108	0.29034	51.839	51.691	51.981	-0.26903	-0.31446	0.0019927	NaN	12.207	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73342			3917	3973	2252	2263							0.09477670899730128
ARAKRPSVS	9	Unmodified	_ARAKRPSVS_					0	0	0		ENST00000576012.5_1_17:1538054-1543444:-|nuORF;nc|ENSG00000074660|Q14162-2|SCARF1;ENSG00000074660|ENST00000263071|SCARF1	ENST00000576012.5_1_17:1538054-1543444:-|nuORF	ENST00000576012.5_1_17:1538054-1543444:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2906188964844	2	486.290882	970.567212	-0.67396	-0.00032774	-0.60744	-0.00029539	-1.2814	-0.00062313	486.29071516082763	27.583	2.1938	27.583	27.215	29.408	0					129	55	5	0	0	0	0.56934	1	1580	1580		54.776	10.66	1	37180000			3918	1534	2253	2264	5365	5365					0.08075100631515397
ARALGSAAQVQ	11	Unmodified	_ARALGSAAQVQ_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.8109130859375	2	536.298904	1070.58326	-0.99919	-0.00053587	1.9498	0.0010457	0.9506	0.00050981	536.2996062806902	29.008	0.56305	29.011	28.713	29.276	0.0031357					24	13	3	0	0	0	0.024059	1	1744	1744		61.691	1.7605	1	1342700			3919	3514	2254	2265	5366	5366					0.0507876207773279
ARALGSAAQVQ	11	Unmodified	_ARALGSAAQVQ_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.298904	1070.58326	-1.4658	-0.00078612	1.4456	0.00077527	-0.020233	-1.0851E-05	536.2995912186323	29.117	0.346	28.872	28.709	29.055	-0.24524	-0.028692	-6.9942E-05	NaN	61.691	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93413			3920	3514	2254	2265							0.0507876207773279
ARALGSAAQVQ	11	Unmodified	_ARALGSAAQVQ_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.298904	1070.58326	-0.79922	-0.00042862	1.2082	0.00064797	0.40901	0.00021935	536.2991079934195	29.031	0.51845	28.858	28.638	29.156	-0.17258	-0.042129	-0.00032453	NaN	61.691	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77841			3921	3514	2254	2265							0.0507876207773279
ARALGSAAQVQ	11	Unmodified	_ARALGSAAQVQ_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.298904	1070.58326	-0.94438	-0.00050647	1.1118	0.00059627	0.16744	8.98E-05	536.2996034958883	29.024	0.42977	28.874	28.657	29.087	-0.14952	-0.026433	-0.00042794	NaN	61.691	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62735			3922	3514	2254	2265							0.0507876207773279
ARALLLALL	9	Unmodified	_ARALLLALL_					0	0	0			REV__ENSG00000215148|ENST00000399677|PRSS41	REV__ENSG00000215148|ENST00000399677|PRSS41	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.3284912109375	2	477.328945	952.643337	0.55973	0.00026718	-0.35501	-0.00016946	0.20472	9.7718E-05	477.3286239558356	78.319	2.5845	78.319	78.042	80.626	0					138	61	4	0	0	0	0.36105	1	9718	9718		68.485	5.5063	1	3617800	+		3923	28800	2255	2266	5367	5367					0.16512104478943002
ARALLLALL	9	Unmodified	_ARALLLALL_					0	0	0			REV__ENSG00000215148|ENST00000399677|PRSS41	REV__ENSG00000215148|ENST00000399677|PRSS41	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.3289489746094	2	477.328945	952.643337	-0.068032	-3.2473E-05	0.2106	0.00010053	0.14257	6.8053E-05	477.3289054610907	78.443	2.1561	78.459	78.155	80.311	0.015907					129	51	4	0	0	0	0.70186	1	9653	9653		45.952	7.1458	1	3587800	+		3924	28800	2255	2266	5368	5368					0.16512104478943002
ARALRLGEA	9	Unmodified	_ARALRLGEA_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.301025390625	2	478.785433	955.556313	0.031557	1.5109E-05	0.77241	0.00036982	0.80397	0.00038493	478.7855453096669	31.51	0.56668	31.51	31.343	31.91	0					24	13	3	0	0	0	0.024374	1	2108	2108		32.812	4.9302	1	223760	+		3925	26892	2256	2267	5369	5369					0.0767569825721921
ARAPHASQQW	10	Unmodified	_ARAPHASQQW_					0	0	0		ENST00000568546.5_3_16:2029772-2030570:+|nuORF	ENST00000568546.5_3_16:2029772-2030570:+|nuORF	ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.2853393554688	2	576.288871	1150.56319	-0.74904	-0.00043166	-3.9155	-0.0022565	-4.6645	-0.0026881	576.286372878829	29.073	0.47486	28.9	28.681	29.156	-0.17258					16	10	2	0	0	0	0.03519	1	1733	1733		20.947	4.4738	1	84306			3926	16985	2257	2268	5370	5370					-0.006069888622050712
ARAPRSTVP	9	Unmodified	_ARAPRSTVP_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7777099609375	2	477.777608	953.540663	-0.86432	-0.00041295	-0.014007	-6.692E-06	-0.87832	-0.00041964	477.77780002341314	27.145	2.5781	27.226	26.29	28.868	0.081293					199	64	5	0	0	0	0.74711	1	1414	1414		42.864	2.2917	1	98548000	+		3927	20465	2258	2269	5371	5371					0.062034117401822186
ARARAYID	8	Unmodified	_ARARAYID_					0	0	0		nc|ENSG00000164488|Q5SW24-2|DACT2;ENSG00000164488|ENST00000366795|DACT2	nc|ENSG00000164488|Q5SW24-2|DACT2	nc|ENSG00000164488|Q5SW24-2|DACT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.26739501953125	2	468.256508	934.498464	0.13154	6.1597E-05	0.87444	0.00040946	1.006	0.00047106	468.25629554165147	20.065	0.47871	19.897	19.767	20.246	-0.16774					12	9	2	0	0	0	0.027866	1	500	500		15.642	0	1	39995			3928	7285	2259	2270	5372	5372					0.028594363317779425
ARARGREP	8	Unmodified	_ARARGREP_					0	0	0			REV__PITX1|p.A190Gfs*382|1|0.23|ENSG00000069011|chr5:135029157-135029158|-/A|frameshift_variant	REV__PITX1|p.A190Gfs*382|1|0.23|ENSG00000069011|chr5:135029157-135029158|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7507629394531	2	456.759749	911.504946	-0.52877	-0.00024152	-4.0262	-0.001839	-4.555	-0.0020805	456.75791531256357	30.35	0.57941	30.424	30.087	30.667	0.074314					23	13	3	0	0	0	0.027866	1	1846	1846		12.207	0.69583	1	85828	+		3929	37378	2260	2271	5373	5373					0.04565374283174606
ARARGRSAA	9	Unmodified	_ARARGRSAA_					0	0	0			REV__BCAR1|p.P641Lfs*61|1|0.13|ENSG00000050820|chr16:75234977-75234977|G/-|frameshift_variant	REV__BCAR1|p.P641Lfs*61|1|0.13|ENSG00000050820|chr16:75234977-75234977|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.2799377441406	2	458.265199	914.515845	-0.67927	-0.00031128	-2.6896	-0.0012325	-3.3688	-0.0015438	458.2639463530242	44.048	0.31947	43.943	43.78	44.099	-0.10468					9	8	2	0	0	0	0.024506	1	4084	4084		16.473	0	1	341700	+		3930	19201	2261	2272	5374	5374					0.055167766574641064
ARARHREL	8	Unmodified	_ARARHREL_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3111267089844	2	504.794124	1007.57369	-1.1468	-0.00057889	1.0906	0.00055054	-0.056167	-2.8353E-05	504.7943806361979	35.36	0.22982	35.339	35.196	35.426	-0.021767					6	4	2	0	0	0	0.027866	1	2680	2680		42.474	11.971	1	61912			3931	5797	2262	2273	5375	5375					0.07021038582877281
ARARPAGTF	9	Unmodified	_ARARPAGTF_					0	0	0			REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.77880859375	2	473.764501	945.514448	0.33405	0.00015826	-2.2375	-0.0010601	-1.9035	-0.00090181	473.763633025497	23.32	0.71355	23.32	22.894	23.607	0					25	16	2	0	0	0	0.024436	1	907	907		30.504	11.4	1	150940	+		3932	30925	2263	2274	5376	5376					0.03951142568712385
ARARPGGRP	9	Unmodified	_ARARPGGRP_					0	0	0		ENST00000535507.1_1_12:3842023-3862361:-|nuORF	ENST00000535507.1_1_12:3842023-3862361:-|nuORF	ENST00000535507.1_1_12:3842023-3862361:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.3055114746094	2	469.275567	936.53658	0.0095164	4.4658E-06	2.7768	0.0013031	2.7864	0.0013076	469.2766685411295	53.361	0.68454	53.457	52.98	53.664	0.095669					30	18	3	0	0	0	0.024381	1	5629	5629		55.504	0	1	369400			3933	16349	2264	2275	5377	5377					0.06577367037129989
ARARRGGLV	9	Unmodified	_ARARRGGLV_					0	0	0			REV__ENST00000414563.6_1_6:157802226-157802931:+|nuORF	REV__ENST00000414563.6_1_6:157802226-157802931:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.3002014160156	2	478.299042	954.583531	0.7452	0.00035643	1.8312	0.00087584	2.5764	0.0012323	478.29989438525683	72.93	1.5024	72.649	72.025	73.528	-0.28124					110	37	5	0	0	0	0.31247	1	8888	8888		73.975	0	1	11365000	+		3934	32038	2265	2276	5378	5378					0.10442226588281756
ARARRLAR	8	Unmodified	_ARARRLAR_					0	0	0			REV__nc|ENSG00000100342|O14791-3|APOL1	REV__nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.313232421875	2	485.312484	968.610414	-1.2198	-0.00059197	3.6401	0.0017666	2.4204	0.0011746	485.3140683169259	44.29	1.4688	44.146	43.848	45.316	-0.14471					114	42	5	0	0	0	0.71833	1	4201	4201		65.803	0	1	40669000	+		3935	21092	2266	2277	5379	5379					0.12485335199460224
ARARRLWL	8	Unmodified	_ARARRLWL_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2730102539062	2	521.32506	1040.63557	-0.32883	-0.00017143	2.2111	0.0011527	1.8823	0.00098127	521.326223892768	61.51	0.37417	61.252	61.049	61.423	-0.25725					12	8	2	0	0	0	0.027866	1	6881	6881		42.474	7.2737	1	68255			3936	8915	2267	2278	5380	5380					0.11687390002020948
ARARVPMPSNK	11	Unmodified	_ARARVPMPSNK_					0	0	0		nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	613.3517456054688	2	613.842956	1225.67136	-0.13164	-8.0806E-05	2.2877	0.0014043	2.1561	0.0013235	614.3480622478859	86.202	0.64851	86.157	85.861	86.51	-0.045097					25	14	3	0	0	0	0.02478	1	10807	10807		32.751	0	1	213100			3937	7045	2268	2279	5381	5381					0.0675505939670984
ARASQQPK	8	Unmodified	_ARASQQPK_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7698974609375	2	443.248683	884.482814	-0.18214	-8.0736E-05	0.55926	0.00024789	0.37711	0.00016715	443.24884442810304	20.371	1.1513	20.266	19.745	20.897	-0.10477					34	23	2	0	0	0	0.027866	1	532	532		11.511	0	1	95647			3938	8954	2269	2280	5382	5382					0.03595149814748311
ARATAPVQSE	10	Unmodified	_ARATAPVQSE_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2822875976562	2	515.269813	1028.52507	-0.63787	-0.00032868	0.17891	9.2188E-05	-0.45896	-0.00023649	515.2697884681277	32.41	0.79938	32.473	32.163	32.962	0.062885					40	20	3	0	0	0	0.03519	1	2246	2246		41.427	12.277	1	1123000			3939	1307	2270	2281	5383	5383					0.011950804324669662
ARAVKPLR	8	Unmodified	_ARAVKPLR_					0	0	0			REV__ENSG00000132793|ENST00000373257|LPIN3	REV__ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7713623046875	2	455.800886	909.587219	-0.1548	-7.0557E-05	3.239	0.0014763	3.0842	0.0014058	455.80194551685247	73.237	0.21737	73.237	73.109	73.327	0					6	5	2	0	0	0	0.027866	1	8931	8931		12.959	0	1	26025	+		3940	23321	2271	2282	5384	5384					0.1288089636212817
ARAVLEVK	8	Unmodified	_ARAVLEVK_					0	0	0			REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2921142578125	2	443.279452	884.544351	-0.042433	-1.881E-05	-0.91806	-0.00040696	-0.96049	-0.00042577	443.2789786188696	36.485	0.51729	36.485	36.37	36.887	0					32	13	3	0	0	0	0.027866	1	2963	2963		127.46	3.4729	1	195910	+		3941	36752	2272	2283	5385	5385					0.09746081514026628
ARAVLEVK	8	Unmodified	_ARAVLEVK_					0	0	0			REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.279452	884.544351	-0.46583	-0.00020649	-0.077674	-3.4431E-05	-0.54351	-0.00024093	443.27927665195875	36.33	0.50747	36.288	36.101	36.609	-0.042454	-0.098697	0.00035045	NaN	127.46	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170450	+		3942	36752	2272	2283							0.09746081514026628
ARAVRRRA	8	Unmodified	_ARAVRRRA_					0	0	0			REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7436218261719	2	478.304659	954.594764	-0.86437	-0.00041343	3.4163	0.001634	2.5519	0.0012206	478.30620219210516	29.733	0.64148	29.811	29.45	30.091	0.078346					36	15	3	0	0	0	0.027866	1	1800	1800		24.203	1.1603	1	555730	+		3943	35898	2273	2284	5386	5386					0.11565048682405177
ARAVSRIALL	10	Unmodified	_ARAVSRIALL_					0	0	0			REV__ENST00000274498.8_1_5:142150079-142150367:+|nuORF	REV__ENST00000274498.8_1_5:142150079-142150367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.3436279296875	2	535.345658	1068.67676	-0.8499	-0.00045499	0.46862	0.00025088	-0.38127	-0.00020411	535.3467219660339	76.461	0.92637	76.233	75.927	76.853	-0.22843					59	22	4	0	0	0	0.86389	1	9384	9384		56.434	6.9922	1	1827500	+		3944	29832	2274	2285	5387	5387					0.14517106250832512
ARCAEKDI	8	Unmodified	_ARCAEKDI_					0	0	0			REV__ENSG00000103187|ENST00000262428|COTL1	REV__ENSG00000103187|ENST00000262428|COTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.74786376953125	2	453.229102	904.443651	-0.76366	-0.00034611	0.84389	0.00038248	0.080236	3.6365E-05	453.2293059120553	39.741	0.89891	39.628	39.041	39.94	-0.11223					37	24	2	0	0	0	0.027866	1	3395	3395		23.042	14.811	1	127730	+		3945	21362	2275	2286	5388	5388					-0.012393185311225352
ARCAEKDI	8	Unmodified	_ARCAEKDI_					0	0	0			REV__ENSG00000103187|ENST00000262428|COTL1	REV__ENSG00000103187|ENST00000262428|COTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.7485046386719	2	453.229102	904.443651	-0.6495	-0.00029437	1.0711	0.00048543	0.42156	0.00019106	453.22942526381433	39.804	0.73677	39.828	39.277	40.014	0.023727					36	20	2	0	0	0	0.027866	1	3385	3385		20.947	9.4359	1	142300	+		3946	21362	2275	2286	5389	5389					-0.012393185311225352
ARCISKILS	9	Unmodified	_ARCISKILS_					0	0	0			REV__CCIN|p.F123S|1|0.06|ENSG00000185972|chr9:36169870-36169870|T/C|missense_variant	REV__CCIN|p.F123S|1|0.06|ENSG00000185972|chr9:36169870-36169870|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.791748046875	2	495.791869	989.569186	-0.16266	-8.0648E-05	-0.096343	-4.7766E-05	-0.25901	-0.00012841	495.79167602682065	34.858	0.82748	34.858	34.552	35.38	0					48	21	3	0	0	0	0.53979	1	2628	2628		56.721	3.3696	1	2368500	+		3947	19260	2276	2287	5390	5390					0.07398393325115649
ARCRSLVKV	9	Carbamidomethyl (C)	_ARC(Carbamidomethyl (C))RSLVKV_	ARC(1)RSLVKV		ARC(110)RSLVKV		0	1	0		ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-3|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.8208618164062	2	544.821492	1087.62843	-0.37201	-0.00020268	-0.44175	-0.00024067	-0.81376	-0.00044336	544.8211502325307	98.708	1.5546	98.708	98.317	99.871	0					87	35	3	0	0	0	0.11092	1	12658	12658		108.09	8.7125	1	2869200			3948	6447	2277	2288	5391	5391	79				0.08812289339266499
ARCRSLVKV	9	Carbamidomethyl (C)	_ARC(Carbamidomethyl (C))RSLVKV_	ARC(1)RSLVKV		ARC(140)RSLVKV		0	1	0		ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-3|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.8211059570312	2	544.821492	1087.62843	-0.43156	-0.00023512	-0.34486	-0.00018789	-0.77642	-0.00042301	544.8211952151635	98.599	1.5112	98.609	98.273	99.785	0.010231					90	34	3	0	0	0	0.028071	5	12551	12541;12551;12563;12574;12597		143.11	25.204	1	3073100			3949	6447	2277	2288	5392;5393;5394;5395;5396	5393	79				0.08812289339266499
ARCRSLVKV	9	Carbamidomethyl (C)	_ARC(Carbamidomethyl (C))RSLVKV_	ARC(1)RSLVKV		ARC(120)RSLVKV		0	1	0		ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-3|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.821044921875	2	544.821492	1087.62843	-0.21682	-0.00011813	-0.31297	-0.00017051	-0.52979	-0.00028864	544.8210100253785	98.776	1.4681	98.772	98.39	99.858	-0.0038834					119	33	4	0	0	0	0.082191	3	12539	12539;12573;12612		116.9	14.13	1	3155200			3950	6447	2277	2288	5397;5398;5399	5397	79				0.08812289339266499
ARCRSLVKV	9	Carbamidomethyl (C)	_ARC(Carbamidomethyl (C))RSLVKV_	ARC(1)RSLVKV		ARC(130)RSLVKV		0	1	0		ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-3|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.8216552734375	2	544.821492	1087.62843	0.4339	0.0002364	-0.97985	-0.00053384	-0.54595	-0.00029745	544.820693758924	98.64	1.4015	98.504	98.233	99.635	-0.13625					62	33	3	0	0	0	0.057894	1	12237	12237		125.81	32.619	1	576460			3951	6447	2277	2288	5400	5400	79				0.08812289339266499
ARCRSLVKV	9	Carbamidomethyl (C)	_ARC(Carbamidomethyl (C))RSLVKV_	ARC(1)RSLVKV		ARC(130)RSLVKV		0	1	0		ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-3|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.8214111328125	2	544.821492	1087.62843	0.92508	0.000504	-1.3594	-0.00074064	-0.43433	-0.00023663	544.8205090762251	98.64	1.3744	98.515	98.197	99.571	-0.12413					70	34	3	0	0	0	0.047345	2	12221	12210;12221		129.68	12.779	1	834230			3952	6447	2277	2288	5401;5402	5402	79				0.08812289339266499
ARCRSLVKV	9	Carbamidomethyl (C)	_ARC(Carbamidomethyl (C))RSLVKV_	ARC(1)RSLVKV		ARC(130)RSLVKV		0	1	0		ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-3|FBXL18;nc|ENSG00000155034|Q96ME1-2|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.8213500976562	2	544.821492	1087.62843	-0.59151	-0.00032227	0.12476	6.7971E-05	-0.46675	-0.0002543	544.8212457030517	98.764	1.6467	98.596	98.113	99.759	-0.16863					109	39	4	0	0	0	0.047345	3	12222	12222;12233;12245		129.68	21.067	1	820000			3953	6447	2277	2288	5403;5404;5405	5403	79				0.08812289339266499
ARCVPFGEL	9	Unmodified	_ARCVPFGEL_					0	0	0			REV__ENST00000493253.5_1_17:39778327-39780527:-|nuORF	REV__ENST00000493253.5_1_17:39778327-39780527:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.7657470703125	2	496.25512	990.495686	-1.3157	-0.0006529	0.29247	0.00014514	-1.0232	-0.00050776	496.25513489347094	55.94	0.5494	55.725	55.412	55.961	-0.21551					26	14	2	0	0	0	0.024477	1	6058	6058		20.947	0.95016	1	425090	+		3954	33760	2278	2289	5406	5406					5.8448826393942E-05
ARCYYTLF	8	Unmodified	_ARCYYTLF_					0	0	0			REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2950439453125	2	518.74967	1035.48479	-0.023942	-1.242E-05	2.9534	0.0015321	2.9294	0.0015196	518.7509269317164	34.388	0.28239	34.181	34.043	34.326	-0.20696					8	6	2	0	0	0	0.027866	1	2526	2526		31.955	0	1	52273	+		3955	28660	2279	2290	5407	5407					-0.03153557491646097
ARDDFWNH	8	Unmodified	_ARDDFWNH_					0	0	0			REV__ENSG00000134910|ENST00000392708|STT3A	REV__ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2881469726562	2	530.733397	1059.45224	-0.82302	-0.0004368	-3.0149	-0.0016001	-3.838	-0.0020369	530.7316872324734	45.578	0.43256	45.427	45.112	45.544	-0.15156					20	12	2	0	0	0	0.027866	1	4433	4433		35.618	16.258	1	157070	+		3956	23496	2280	2291	5408	5408					-0.0751062857029865
ARDEELIHL	9	Unmodified	_ARDEELIHL_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-4|FRAS1;nc|ENSG00000138759|Q86XX4-6|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.3114624023438	2	548.293288	1094.57202	-1.2154	-0.00066639	1.1631	0.00063772	-0.052283	-2.8667E-05	548.294702462041	56.195	1.1179	56.293	55.634	56.752	0.097893					80	30	4	0	0	0	0.021513	1	6130	6130		104.75	0	1	1485200			3957	5279	2281	2292	5409	5409					0.02851939983634111
ARDFAVPQAY	10	Unmodified	_ARDFAVPQAY_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.29345703125	2	569.288005	1136.56146	-0.247	-0.00014062	1.5239	0.00086756	1.2769	0.00072694	569.28915869451	45.141	0.34945	44.888	44.67	45.019	-0.25252					11	8	2	0	0	0	0.80817	1	4265	4265		60.118	3.3972	1	2839100	+		3958	23887	2282	2293	5410	5410					-0.001360426708288287
ARDIDSVKV	9	Unmodified	_ARDIDSVKV_					0	0	0			REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF	REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.77880859375	2	501.782556	1001.55056	0.56938	0.0002857	2.9707	0.0014907	3.5401	0.0017764	501.784023765974	71.995	1.4161	72.004	71.765	73.181	0.0097733					87	35	3	0	0	0	0.34489	1	8640	8640		69.628	0.8408	1	21981000	+		3959	32991	2283	2294	5411	5411					0.04984554954910436
ARDLGDVMET	10	Unmodified	_ARDLGDVMET_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG;TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7828979492188	2	553.760963	1105.50737	-0.53766	-0.00029773	-4.2442	-0.0023503	-4.7818	-0.002648	553.7593230400585	41.564	0.19878	41.333	41.235	41.434	-0.23029					5	4	2	0	0	0	0.03519	1	3673	3673		19.997	0	1	28148			3960	1083	2284	2295	5412	5412					-0.04116002884688896
ARDNTINLI	9	Unmodified	_ARDNTINLI_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2879028320312	2	515.288005	1028.56146	-0.16419	-8.4605E-05	-0.68695	-0.00035397	-0.85113	-0.00043858	515.2876455401987	34.346	1.2585	34.139	33.824	35.083	-0.20696					72	31	4	0	0	0	0.094442	1	2530	2530		112.41	2.9326	1	6499000			3961	7081	2285	2296	5413	5413					0.04831957329179204
ARDNTINLI	9	Unmodified	_ARDNTINLI_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2879638671875	2	515.288005	1028.56146	-0.76727	-0.00039536	0.14008	7.218E-05	-0.62719	-0.00032318	515.2880765669939	34.323	1.0256	34.147	33.859	34.884	-0.17557					77	25	5	0	0	0	0.03666	1	2505	2505		136.27	15.4	1	6594100			3962	7081	2285	2296	5414	5414					0.04831957329179204
ARDPEAQGAP	10	Unmodified	_ARDPEAQGAP_					0	0	0			REV__sp|P03129|VE7_HPV16ProteinE7OS=Humanpapillomavirustype16OX=333760GN=E7PE=1SV=1	REV__sp|P03129|VE7_HPV16ProteinE7OS=Humanpapillomavirustype16OX=333760GN=E7PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8422546386719	2	506.246338	1010.47812	0.010659	5.3961E-06	0.10619	5.3756E-05	0.11684	5.9152E-05	506.2461853218618	65.435	0.49837	65.472	65.321	65.82	0.037384					21	13	2	0	0	0	0.03519	1	7705	7705		29.17	0	1	286470	+		3963	37524	2286	2297	5415	5415					-0.02669779118673432
ARDRRVTV	8	Unmodified	_ARDRRVTV_					0	0	0			REV__ENSG00000162231|ENST00000294172|NXF1	REV__ENSG00000162231|ENST00000294172|NXF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7773132324219	2	486.788507	971.562461	0.048799	2.3755E-05	1.4013	0.00068213	1.4501	0.00070589	486.78935467658584	41.561	0.21908	41.561	41.396	41.615	0					6	5	2	0	0	0	0.027866	1	3745	3745		79.451	0	1	110350	+		3964	25421	2287	2298	5416	5416					0.07554216488745169
ARDYVVGSIP	10	Unmodified	_ARDYVVGSIP_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8048706054688	2	538.790381	1075.56621	0.77137	0.00041561	-1.2666	-0.00068241	-0.49518	-0.0002668	538.789848563981	37.151	0.80072	37.151	36.578	37.379	0					26	20	2	0	0	0	0.03519	1	3019	3019		37.812	0	1	139370	+		3965	22264	2288	2299	5417	5417					0.031448414719761786
AREAARESGP	10	Unmodified	_AREAARESGP_					0	0	0			REV__ENSG00000122870|ENST00000373886|BICC1	REV__ENSG00000122870|ENST00000373886|BICC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8099365234375	2	522.265062	1042.51557	-0.7421	-0.00038757	2.0823	0.0010875	1.3402	0.00069994	522.2655919173225	53.207	1.1609	53.207	52.711	53.872	0					40	31	2	0	0	0	0.03519	1	5831	5831		47.96	0	1	970630	+		3966	22668	2289	2300	5418	5418					-0.003986878530440663
AREDLLEET	9	Unmodified	_AREDLLEET_					0	0	0		ENST00000354588.7_1_11:62437223-62439219:-|nuORF;ENST00000524759.1_1_11:62434908-62439219:-|nuORF;ENST00000431002.6_1_11:62438460-62439219:-|nuORF	ENST00000354588.7_1_11:62437223-62439219:-|nuORF	ENST00000354588.7_1_11:62437223-62439219:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2891235351562	2	538.266936	1074.51932	-0.75799	-0.000408	-3.8823	-0.0020897	-4.6403	-0.0024977	538.26465268393	82.182	0.507	82.182	82.072	82.579	0					19	11	2	0	0	0	0.024466	1	10254	10254		24.519	0	1	207260			3967	12627	2290	2301	5419	5419					-0.01496062869864545
AREDLLLPI	9	Unmodified	_AREDLLLPI_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-3|ACACB;ENST00000538526.5_3_12:109697932-109704164:+|nuORF	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2445068359375	2	520.310949	1038.60735	-0.24554	-0.00012776	1.1119	0.00057852	0.86633	0.00045076	520.3112961664469	50.335	0.57094	50.416	50.243	50.814	0.08099					19	16	2	0	0	0	0.024381	1	5238	5238		55.504	7.8469	1	172420			3968	1585	2291	2302	5420	5420					0.08958602511438585
AREERSDI	8	Unmodified	_AREERSDI_					0	0	0			REV__OR51B5|p.A227D|1|0.19|ENSG00000167355|chr11:5342845-5342845|G/T|missense_variant	REV__OR51B5|p.A227D|1|0.19|ENSG00000167355|chr11:5342845-5342845|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2712707519531	2	488.246338	974.478122	2.2196	0.0010837	2.7694	0.0013521	4.989	0.0024359	488.2472956676869	24.142	0.4383	23.961	23.759	24.198	-0.18089					14	9	2	0	0	0	0.027866	1	989	989		52.937	8.8199	1	92765	+		3969	37317	2292	2303	5421	5421					-0.010137791186593859
AREGAQRPRFI	11	Unmodified	_AREGAQRPRFI_					0	0	0		ENSG00000164082|ENST00000395052|GRM2;ENST00000296479.9_1_3:51747995-51752125:+|nuORF	ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801208496094	3	434.245944	1299.716	-0.67965	-0.00029513	0.34499	0.00014981	-0.33465	-0.00014532	434.2459758518905	38.913	0.62563	38.94	38.691	39.317	0.027279					28	16	2	0	0	0	0.024723	1	3210	3210		22.562	11.465	1	148450			3970	7207	2293	2304	5422	5422					0.0781320653441071
AREGHALL	8	Unmodified	_AREGHALL_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2742919921875	2	433.745776	865.477	0.17373	7.5355E-05	-0.80845	-0.00035066	-0.63471	-0.0002753	433.7452310135999	47.668	0.43852	47.515	47.231	47.669	-0.15301					20	12	2	0	0	0	0.027866	1	4796	4796		37.028	8.7742	1	155900	+		3971	26922	2294	2305	5423	5423					0.03888051303067641
AREGRIRRALQ	11	Unmodified	_AREGRIRRALQ_					0	0	0			REV__ENST00000404612.1_1_6:26322106-26322214:-|nuORF	REV__ENST00000404612.1_1_6:26322106-26322214:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.6007385253906	3	442.600609	1324.78	0.54223	0.00023999	-0.31959	-0.00014145	0.22263	9.8538E-05	442.6007398797832	102.53	0.67576	102.35	102.09	102.76	-0.17178					43	15	4	0	0	0	1.0621	1	12715	12715		21.78	3.9473	1	539770	+		3972	23285	2295	2306	5424	5424					0.13059986691359882
AREHWQPQ	8	Unmodified	_AREHWQPQ_					0	0	0		ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2764282226562	2	526.25704	1050.49953	-0.13778	-7.2508E-05	1.7271	0.00090888	1.5893	0.00083638	526.2580821219163	94.607	0.12923	94.612	94.532	94.661	0.0041199					4	2	2	0	0	0	0.027866	1	11969	11969		50.025	8.5979	1	16788			3973	3695	2296	2307	5425	5425					-0.02370349299303598
AREKKMPF	8	Unmodified	_AREKKMPF_					0	0	0		chr9:136612903-136615803|369|16.49|0.56|4.87|-|0|TE_info:MIRb,MIRb_dup121023,MIR,SINE,donor,+,136615803,136615952|LINC01451,None|4	chr9:136612903-136615803|369|16.49|0.56|4.87|-|0|TE_info:MIRb,MIRb_dup121023,MIR,SINE,donor,+,136615803,136615952|LINC01451,None|4	chr9:136612903-136615803|369|16.49|0.56|4.87|-|0|TE_info:MIRb,MIRb_dup121023,MIR,SINE,donor,+,136615803,136615952|LINC01451,None|4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.77874755859375	2	503.778762	1005.54297	0.064875	3.2683E-05	-0.7603	-0.00038302	-0.69542	-0.00035034	503.77840521492055	24.025	2.611	24.103	23.352	25.963	0.077791					161	59	5	0	0	0	0.91239	1	935	935		50.025	9.4519	1	908260			3974	437	2297	2308	5426	5426					0.040421241536364505
ARELARPLA	9	Unmodified	_ARELARPLA_					0	0	0			REV__ENSG00000141854|ENST00000587086|MISP3	REV__ENSG00000141854|ENST00000587086|MISP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.80230712890625	2	498.801083	995.587613	0.55954	0.0002791	2.0277	0.0010114	2.5873	0.0012905	498.8019520551757	99.7	0.46871	99.7	99.402	99.871	0					27	10	4	0	0	0	0.70156	1	12762	12762		45.972	5.1941	1	367490	+		3975	24121	2298	2309	5427	5427					0.08964271291324621
ARELGPLYTN	10	Unmodified	_ARELGPLYTN_					0	0	0		ENST00000470882.5_1_1:161141608-161143639:-|nuORF;ENSG00000158850|ENST00000319769|B4GALT3	ENST00000470882.5_1_1:161141608-161143639:-|nuORF	ENST00000470882.5_1_1:161141608-161143639:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3292846679688	2	567.301113	1132.58767	-1.342	-0.00076131	-3.183	-0.0018057	-4.525	-0.002567	567.2986646505504	91.859	0.2121	91.859	91.772	91.985	0					6	4	2	0	0	0	0.03519	1	11637	11637		23.523	0.48021	1	22517			3976	6706	2299	2310	5428	5428					0.026682265006684247
AREQLEVLF	9	Unmodified	_AREQLEVLF_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.786376953125	2	552.806031	1103.59751	0.00032657	1.8053E-07	-0.13675	-7.5598E-05	-0.13643	-7.5417E-05	552.806171417345	55.978	1.062	55.762	55.174	56.236	-0.21607					58	28	3	0	0	0	0.024436	1	6042	6042		30.504	2.6214	1	969530			3977	2823	2300	2311	5429	5429					0.04985414506040797
ARERGRLM	8	Unmodified	_ARERGRLM_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ALDH1L2|p.G638Afs*16|1|0.08|ENSG00000136010|chr12:105040645-105040645|C/-|frameshift_variant;ENSG00000136010|ENST00000258494|ALDH1L2;ALDH1L2|p.M501I|1|0.3|ENSG00000136010|chr12:105052122-105052122|C/G|missense_variant	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79803466796875	2	494.777085	987.539617	-0.42727	-0.0002114	-0.016628	-8.227E-06	-0.44389	-0.00021963	494.77730088949806	61.123	0.60237	60.909	60.493	61.096	-0.21339					37	15	3	0	0	0	0.027866	1	7046	7046		26.796	0	1	381760			3978	61	2301	2312	5430	5430					0.045348740996246306
ARETPRQF	8	Unmodified	_ARETPRQF_					0	0	0			REV__ENST00000446789.2_1_13:113621986-113622999:-|nuORF	REV__ENST00000446789.2_1_13:113621986-113622999:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7933654785156	2	502.76724	1003.51993	-0.16321	-8.2055E-05	-1.2483	-0.00062762	-1.4115	-0.00070968	502.7669367380949	64.414	0.86809	64.212	63.829	64.697	-0.20254					16	10	2	0	0	0	0.027866	1	7280	7280		35.618	5.1146	1	227070	+		3979	32634	2302	2313	5431	5431					0.018308213605109813
AREVASLNN	9	Unmodified	_AREVASLNN_					0	0	0			REV__ENSG00000163485|ENST00000337894|ADORA1	REV__ENSG00000163485|ENST00000337894|ADORA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2529296875	2	487.256705	972.498858	-0.60517	-0.00029488	1.1588	0.00056463	0.55363	0.00026976	487.2571771061951	28.99	0.56761	28.993	28.672	29.24	0.0031357					23	13	2	0	0	0	0.024427	1	1750	1750		34.173	3.6689	1	446020	+		3980	25573	2303	2314	5432	5432					0.011508112609931231
AREVPGRTR	9	Unmodified	_AREVPGRTR_					0	0	0			REV__nc|ENSG00000181577|Q8N319|LINC03040	REV__nc|ENSG00000181577|Q8N319|LINC03040	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2816162109375	2	521.299239	1040.58392	-0.35281	-0.00018392	-1.677	-0.00087424	-2.0298	-0.0010582	521.2984370803166	22.474	0.32238	22.289	22.047	22.369	-0.18539					9	6	2	0	0	0	0.024541	1	791	791		26.693	12.556	1	24452	+		3981	36989	2304	2315	5433	5433					0.0652560151745547
AREVTFPEL	9	Unmodified	_AREVTFPEL_					0	0	0			REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.8115844726562	2	531.284931	1060.55531	-0.051157	-2.7179E-05	0.46413	0.00024659	0.41298	0.00021941	531.2846786285714	68.823	1.3506	68.592	68.156	69.506	-0.23048					61	32	4	0	0	0	0.024288	1	7934	7934		52.937	12.159	1	305010	+		3982	26858	2305	2316	5434	5434					0.027454390976799914
AREVTFPEL	9	Unmodified	_AREVTFPEL_					0	0	0			REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.284931	1060.55531	-0.15315	-8.1365E-05	-0.40307	-0.00021415	-0.55622	-0.00029551	531.2851302867175	68.908	0.60675	68.615	68.326	68.933	-0.29267	-0.0057693	-0.0010541	NaN	52.937	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504960	+		3983	26858	2305	2316							0.027454390976799914
AREVTFPEL	9	Unmodified	_AREVTFPEL_					0	0	0			REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.284931	1060.55531	-0.015014	-7.9768E-06	0.33021	0.00017544	0.3152	0.00016746	531.2849631864088	68.595	0.74078	68.614	68.237	68.978	0.018913	-0.0066294	-0.00027494	NaN	52.937	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483990	+		3984	26858	2305	2316							0.027454390976799914
ARFAPSTQP	9	Unmodified	_ARFAPSTQP_					0	0	0			REV__ENST00000520584.5_1_8:144333229-144335235:+|nuORF	REV__ENST00000520584.5_1_8:144333229-144335235:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2304382324219	2	487.756341	973.498129	-0.2199	-0.00010726	-1.2097	-0.00059002	-1.4296	-0.00069727	487.75618075347126	31.411	0.37776	31.226	31.062	31.44	-0.18503					11	9	2	0	0	0	0.024292	1	2082	2082		49.442	20.292	1	64696	+		3985	34297	2306	2317	5435	5435					0.01032016611952713
ARFGAQLAHIQ	11	Unmodified	_ARFGAQLAHIQ_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.55975341796875	3	404.55964	1210.65709	0.32353	0.00013089	-0.42937	-0.00017371	-0.10584	-4.2819E-05	404.5594858333592	33.403	1.0848	33.172	32.752	33.837	-0.23107					87	26	6	0	0	0	0.99147	1	2369	2369		38.714	1.1142	1	9215100		+	3986	514	2307	2318	5436	5436					0.060187302400890985
ARFLDAYAE	9	Unmodified	_ARFLDAYAE_					0	0	0		ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000459805.5_1_1:155184905-155186549:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.355224609375	2	528.261456	1054.50836	-1.1278	-0.00059578	2.2789	0.0012039	1.1511	0.00060809	528.2626519461633	50.451	0.33383	50.451	50.21	50.544	0					11	9	2	0	0	0	0.024457	1	5265	5265		10.265	0	1	144920			3987	14638	2308	2319	5437	5437					-0.016714204534764576
ARFLVEKIL	9	Unmodified	_ARFLVEKIL_					0	0	0		ENSG00000118508|ENST00000367495|RAB32	ENSG00000118508|ENST00000367495|RAB32	ENSG00000118508|ENST00000367495|RAB32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8036499023438	2	544.844959	1087.67537	-0.44496	-0.00024244	3.2187	0.0017537	2.7737	0.0015113	544.846669907788	21.907	0.43132	21.716	21.516	21.947	-0.19072					14	8	2	0	0	0	0.024541	1	727	727		15.642	12.232	1	56207			3988	3687	2309	2320	5438	5438					0.1350347216209684
ARFNFFVN	8	Unmodified	_ARFNFFVN_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7923583984375	2	507.761426	1013.5083	-0.51418	-0.00026108	2.6585	0.0013499	2.1444	0.0010888	507.7626350281146	76.25	0.69167	76.021	75.669	76.36	-0.22843					27	17	3	0	0	0	0.027866	1	9313	9313		25.45	0	1	120220			3989	3644	2310	2321	5439	5439					0.002086243371877572
ARFSGNLLV	9	Unmodified	_ARFSGNLLV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.78253173828125	2	488.782359	975.550165	-0.45318	-0.0002215	0.40317	0.00019706	-0.050009	-2.4443E-05	488.7824645004465	56.701	1.2546	56.534	55.962	57.216	-0.1672					91	32	4	0	0	0	0.5973	2	6136	6136;6148		52.937	8.4056	1	6790700			3990	1212	2311	2322	5440;5441	5440					0.061411800257246796
ARFSGNLLV	9	Unmodified	_ARFSGNLLV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.7823791503906	2	488.782359	975.550165	0.33802	0.00016522	-0.43813	-0.00021415	-0.10011	-4.8932E-05	488.7820637509025	56.741	1.3498	56.539	55.934	57.283	-0.20208					92	35	4	0	0	0	0.26966	3	6155	6144;6155;6178		79.713	24.208	1	6973100			3991	1212	2311	2322	5442;5443;5444	5443					0.061411800257246796
ARFSGNLLV	9	Unmodified	_ARFSGNLLV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7823486328125	2	488.782359	975.550165	0.5948	0.00029073	-0.77359	-0.00037812	-0.17879	-8.739E-05	488.78187985732905	56.787	1.18	56.562	56.029	57.209	-0.2248					85	30	4	0	0	0	0.37611	2	6160	6149;6160		67.494	11.989	1	6569200			3992	1212	2311	2322	5445;5446	5446					0.061411800257246796
ARFSGNLLV	9	Unmodified	_ARFSGNLLV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.782359	975.550165	-0.30202	-0.00014762	-0.054254	-2.6518E-05	-0.35628	-0.00017414	488.78224718079224	56.649	0.69073	56.649	56.277	56.968	0	0.065003	-7.9068E-05	NaN	79.713	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3012600			3993	1212	2311	2322							0.061411800257246796
ARFSGNLLV	9	Unmodified	_ARFSGNLLV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	488.782359	975.550165	-0.54962	-0.00026864	0.258	0.00012611	-0.29161	-0.00014254	488.7823590750307	56.788	0.77295	56.623	56.201	56.974	-0.16431	0.039025	0.00022618	NaN	79.713	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3071600			3994	1212	2311	2322							0.061411800257246796
ARFSGNLLV	9	Unmodified	_ARFSGNLLV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.782359	975.550165	-0.72713	-0.00035541	0.43094	0.00021063	-0.2962	-0.00014478	488.7824545998497	56.5	0.84568	56.598	56.101	56.947	0.097893	0.013492	0.00039524	NaN	79.713	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2589700			3995	1212	2311	2322							0.061411800257246796
ARFTLTAGLL	10	Unmodified	_ARFTLTAGLL_					0	0	0			REV__ENSG00000160606|ENST00000292090|TLCD1	REV__ENSG00000160606|ENST00000292090|TLCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8186645507812	2	531.818941	1061.62333	0.16751	8.9087E-05	-4.1721	-0.0022188	-4.0045	-0.0021297	531.8166393339519	85.223	2.6076	85.223	83.692	86.3	0					165	61	4	0	0	0	0.75651	1	10722	10722		63.534	2.5619	1	961570	+		3996	25330	2312	2323	5447	5447					0.09498308748334239
ARFTLTAGLL	10	Unmodified	_ARFTLTAGLL_					0	0	0			REV__ENSG00000160606|ENST00000292090|TLCD1	REV__ENSG00000160606|ENST00000292090|TLCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	531.818941	1061.62333	-0.84712	-0.00045051	-3.243	-0.0017247	-4.0901	-0.0021752	531.8171193691205	85.186	2.8236	85.211	83.511	86.334	0.025536					161	66	4	0	0	0	1.0719	1	10615	10615		36.447	1.246	1	1093400	+		3997	25330	2312	2323	5448	5448					0.09498308748334239
ARFTLTAGLL	10	Unmodified	_ARFTLTAGLL_					0	0	0			REV__ENSG00000160606|ENST00000292090|TLCD1	REV__ENSG00000160606|ENST00000292090|TLCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8164672851562	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	0.94316	1	10357	10357		51.193	14.034	1	1297700	+		3998	25330	2312	2323	5449	5449					0.09498308748334239
ARFYLPIL	8	Unmodified	_ARFYLPIL_					0	0	0		nc|ENSG00000016864|Q68CQ7-2|GLT8D1;ENST00000484163.5_1_3:52729811-52734476:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.79718017578125	2	496.80002	991.585488	-0.50633	-0.00025154	-3.3841	-0.0016812	-3.8904	-0.0019327	496.7982643325203	57.638	0.44619	57.734	57.608	58.054	0.09531					18	11	2	0	0	0	0.88442	1	6420	6420		52.299	13.046	1	1223300			3999	15296	2313	2324	5450	5450					0.0893584255351243
ARFYLPIL	8	Unmodified	_ARFYLPIL_					0	0	0		nc|ENSG00000016864|Q68CQ7-2|GLT8D1;ENST00000484163.5_1_3:52729811-52734476:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.80002	991.585488	0.33023	0.00016406	-4.2681	-0.0021204	-3.9379	-0.0019563	496.7978179941711	57.749	0.41673	57.749	57.603	58.02	0	0.0079268	-0.00061102	NaN	52.299	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247900			4000	15296	2313	2324							0.0893584255351243
ARGALGPLL	9	Unmodified	_ARGALGPLL_					0	0	0		ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.274169921875	2	434.27417	866.533787	0.58584	0.00025442	-0.64496	-0.00028009	-0.059116	-2.5673E-05	434.27393026118796	54.587	1.2173	54.685	54.077	55.294	0.098015					71	34	4	0	0	0	0.30842	1	5908	5908		74.517	0	1	5314200			4001	15137	2314	2325	5451	5451					0.09518098859598467
ARGALGPLL	9	Unmodified	_ARGALGPLL_					0	0	0		ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	434.2737731933594	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.089	1	82.918	82.418	83.418	-0.17095								0	0	0	0.59296	1	10027	10027		40.573	0	1				4002	15137	2314	2325	5452	5452					0.09518098859598467
ARGAQESL	8	Unmodified	_ARGAQESL_					0	0	0			REV__ENST00000509792.1_1_4:176987041-176989385:+|nuORF	REV__ENST00000509792.1_1_4:176987041-176989385:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2481384277344	2	416.219591	830.42463	-0.36747	-0.00015295	-0.32853	-0.00013674	-0.696	-0.00028969	416.2192793754054	36.062	0.44671	36.1	35.927	36.374	0.03804					20	12	2	0	0	0	0.027866	1	2754	2754		35.618	0	1	59046	+		4003	34087	2315	2326	5453	5453					0.002634681694871688
ARGCEVVFRN	10	Unmodified	_ARGCEVVFRN_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.8190307617188	2	575.792932	1149.57131	-0.71034	-0.00040901	0.33449	0.00019259	-0.37585	-0.00021641	575.7927460792316	67.878	0.68863	67.878	67.606	68.295	0					31	17	3	0	0	0	0.03519	1	8167	8167		32.812	0	1	240700			4004	247	2316	2327	5454	5454					0.002508220629351854
ARGCGAGPLL	10	Carbamidomethyl (C)	_ARGC(Carbamidomethyl (C))GAGPLL_	ARGC(1)GAGPLL		ARGC(74)GAGPLL		0	1	0			REV__ENST00000372164.7_1_10:82249024-82269226:+|nuORF	REV__ENST00000372164.7_1_10:82249024-82269226:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2559814453125	2	486.258194	970.501834	-0.40331	-0.00019611	-4.3866	-0.002133	-4.7899	-0.0023291	486.2559129640471	53.162	1.4291	53.162	52.513	53.942	0					95	38	4	0	0	0	0.62679	1	5710	5710		73.975	7.5455	1	5329000	+		4005	31193	2317	2328	5455	5455	409				0.015403631141793994
ARGELTSPN	9	Unmodified	_ARGELTSPN_					0	0	0			REV__ENST00000561841.1_1_16:2089927-2093675:-|nuORF	REV__ENST00000561841.1_1_16:2089927-2093675:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.76165771484375	2	472.743431	943.472308	0.0089973	4.2534E-06	-0.62522	-0.00029557	-0.61622	-0.00029131	472.7428946412668	32.758	0.22143	32.758	32.606	32.827	0					6	5	2	0	0	0	0.02435	1	2298	2298		42.396	0	1	71425	+		4006	35181	2318	2329	5456	5456					-0.0016887763034674208
ARGELTSPN	9	Unmodified	_ARGELTSPN_					0	0	0			REV__ENST00000561841.1_1_16:2089927-2093675:-|nuORF	REV__ENST00000561841.1_1_16:2089927-2093675:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.76153564453125	2	472.743431	943.472308	-0.11196	-5.293E-05	2.1507	0.0010167	2.0388	0.00096382	472.7443635354985	32.636	0.14521	32.648	32.523	32.669	0.011799					5	3	2	0	0	0	0.024447	1	2252	2252		40.778	0.20554	1	121370	+		4007	35181	2318	2329	5457	5457					-0.0016887763034674208
ARGFICKCP	9	Unmodified	_ARGFICKCP_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1;NOTCH1|p.C1352Lfs*48|1|0.32|ENSG00000148400|chr9:136505828-136505841|GCGCAGGCTGCCGC/-|frameshift_variant;NOTCH1|p.L1531Cfs*49|1|0.27|ENSG00000148400|chr9:136505100-136505100|G/-|frameshift_variant;NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant;NOTCH1|p.Q1978Pfs*17|1|0.5|ENSG00000148400|chr9:136500555-136500556|-/A|frameshift_variant;NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	ENSG00000148400|ENST00000651671|NOTCH1;NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7613220214844	2	497.75169	993.488827	0.42038	0.00020924	0.42815	0.00021311	0.84852	0.00042235	497.7525554655129	41.481	0.39751	41.481	41.36	41.758	0					23	10	3	0	0	0	0.024466	1	3764	3764		25.45	0	1	101590			4008	6027;18883	2319	2330	5458	5458					-0.008177912695941814
ARGFMLGLII	10	Unmodified	_ARGFMLGLII_					0	0	0		ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2944946289062	2	545.825712	1089.63687	-0.86857	-0.00047409	0.55967	0.00030548	-0.3089	-0.0001686	545.8259313068858	57.367	0.81434	57.2	56.751	57.565	-0.1672					38	21	2	0	0	0	0.03519	1	6282	6282		23.042	1.0826	1	468330			4009	14946	2320	2331	5459	5459					0.09563843255932625
ARGFMLGLII	10	Unmodified	_ARGFMLGLII_					0	0	0		ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	545.825712	1089.63687	-0.7246	-0.00039551	0.76096	0.00041535	0.036362	1.9847E-05	545.8261318916908	57.378	0.49363	57.378	57.073	57.567	0	0.062493	0.00037746	NaN	23.042	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253230			4010	14946	2320	2331							0.09563843255932625
ARGFMLGLII	10	Unmodified	_ARGFMLGLII_					0	0	0		ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.825712	1089.63687	-0.2394	-0.00013067	-0.17144	-9.3578E-05	-0.41084	-0.00022425	545.825482585299	57.658	0.57434	57.483	57.034	57.608	-0.1749	0.1674	-0.00064041	NaN	23.042	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235500			4011	14946	2320	2331							0.09563843255932625
ARGFMLGLII	10	Unmodified	_ARGFMLGLII_					0	0	0		ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	545.825712	1089.63687	-1.1021	-0.00060155	0.64542	0.00035229	-0.45667	-0.00024926	545.8260113481755	57.267	0.41476	57.362	57.051	57.465	0.095306	0.046579	0.00025132	NaN	23.042	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259610			4012	14946	2320	2331							0.09563843255932625
ARGFPVHPW	9	Unmodified	_ARGFPVHPW_					0	0	0		ENST00000518929.5_1_17:67144970-67149609:-|nuORF	ENST00000518929.5_1_17:67144970-67149609:-|nuORF	ENST00000518929.5_1_17:67144970-67149609:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7590942382812	2	533.782693	1065.55083	-0.757	-0.00040407	4.1581	0.0022195	3.4011	0.0018155	534.2885872781536	73.079	0.52778	72.885	72.629	73.157	-0.1936					19	12	2	0	0	0	0.024466	1	8548	8548		25.45	5.4534	1	75373			4013	15939	2321	2332	5460	5460					0.020680194654232764
ARGFPVHPW	9	Unmodified	_ARGFPVHPW_					0	0	0		ENST00000518929.5_1_17:67144970-67149609:-|nuORF	ENST00000518929.5_1_17:67144970-67149609:-|nuORF	ENST00000518929.5_1_17:67144970-67149609:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.782693	1065.55083	-0.86831	-0.00046349	-1.8815	-0.0010043	-2.7498	-0.0014678	533.7817789121659	73.302	0.28092	73.038	72.936	73.217	-0.26479	0.07609	-0.0024724	NaN	25.45	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74687			4014	15939	2321	2332							0.020680194654232764
ARGGARGRSGE	11	Unmodified	_ARGGARGRSGE_					0	0	0			REV__ENST00000483825.5_1_1:167404074-167487702:-|nuORF	REV__ENST00000483825.5_1_1:167404074-167487702:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.27880859375	2	537.281577	1072.5486	-1.012	-0.00054374	-4.4762	-0.002405	-5.4882	-0.0029487	537.2791528953834	24.673	0.70576	24.673	24.429	25.135	0					35	15	4	0	0	0	0.70358	1	1098	1098		63.534	10.597	1	955520	+		4015	33522	2322	2333	5461	5461					0.015229389896603607
ARGGFKSK	8	Unmodified	_ARGGFKSK_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7488098144531	2	425.748319	849.482085	-0.72573	-0.00030898	0.81823	0.00034836	0.092496	3.938E-05	425.74861941915304	26.066	1.5438	26.066	25.779	27.323	0					87	37	3	0	0	0	0.97794	1	1290	1290		40.778	1.972	1	5171000	+		4016	21252	2323	2334	5462	5462					0.05132355165710578
ARGGLAPRA	9	Unmodified	_ARGGLAPRA_					0	0	0		ENST00000477777.1_1_X:153713880-153714433:-|nuORF;ENST00000417913.1_1_X:153713880-153714888:-|nuORF	ENST00000477777.1_1_X:153713880-153714433:-|nuORF	ENST00000477777.1_1_X:153713880-153714433:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7593078613281	2	434.759218	867.503883	-0.024733	-1.0753E-05	0.12999	5.6513E-05	0.10525	4.576E-05	434.759197201521	21.498	1.5447	21.569	21.106	22.651	0.071487					78	31	4	0	0	0	0.40179	1	635	635		65.803	5.5092	1	1542400			4017	13924	2324	2335	5463	5463					0.06483159914273529
ARGGRLSLTW	10	Unmodified	_ARGGRLSLTW_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.5919799804688	2	558.817264	1115.61998	-0.19194	-0.00010726	-0.99564	-0.00055638	-1.1876	-0.00066364	558.816600298965	41.84	0.62493	41.717	41.491	42.116	-0.12299					37	16	3	0	0	0	0.03519	1	3791	3791		34.173	15.069	1	830420			4018	4475	2325	2336	5464	5464					0.06679058694317064
ARGKGLPIVLN	11	Unmodified	_ARGKGLPIVLN_					0	0	0			REV__ENSG00000177992|ENST00000325643|SPATA31E1	REV__ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3109741210938	2	569.358765	1136.70298	-1.0693	-0.0006088	-1.9581	-0.0011149	-3.0273	-0.0017236	569.356577683167	52.437	0.22054	52.168	52.018	52.238	-0.26904					8	5	2	0	0	0	0.024762	1	5416	5416		24.519	0	1	36697	+		4019	27156	2326	2337	5465	5465					0.1400937542232441
ARGLPDPS	8	Unmodified	_ARGLPDPS_					0	0	0		ENST00000359867.7_2_22:38689311-38694809:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF	ENST00000359867.7_2_22:38689311-38694809:-|nuORF	ENST00000359867.7_2_22:38689311-38694809:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7387390136719	2	406.716685	811.418816	-0.2714	-0.00011038	0.14397	5.8554E-05	-0.12743	-5.1827E-05	406.71667397563806	62.922	0.45507	62.682	62.492	62.947	-0.23926					17	10	2	0	0	0	0.027866	1	7283	7283		30.504	17.544	1	336850			4020	12749	2327	2338	5466	5466					0.0055636965781786785
ARGLQSPI	8	Unmodified	_ARGLQSPI_					0	0	0		ENST00000432622.1_1_1:32827722-32827821:-|nuORF	ENST00000432622.1_1_1:32827722-32827821:-|nuORF	ENST00000432622.1_1_1:32827722-32827821:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.2791442871094	2	421.248152	840.481751	-0.094322	-3.9733E-05	2.2402	0.00094367	2.1459	0.00090394	421.2479620276903	29.015	0.93387	28.866	28.403	29.337	-0.14952					41	21	3	0	0	0	0.027866	1	1765	1765		50.025	7.6284	1	93748			4021	14209	2328	2339	5467	5467					0.055129354458472335
ARGLQSPI	8	Unmodified	_ARGLQSPI_					0	0	0		ENST00000432622.1_1_1:32827722-32827821:-|nuORF	ENST00000432622.1_1_1:32827722-32827821:-|nuORF	ENST00000432622.1_1_1:32827722-32827821:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	421.248152	840.481751	-0.33627	-0.00014165	0.26954	0.00011354	-0.066734	-2.8112E-05	421.2483406831621	28.972	0.69249	28.802	28.466	29.159	-0.17003	-0.031807	-0.00031068	NaN	50.025	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56767			4022	14209	2328	2339							0.055129354458472335
ARGNNRRKKT	10	Unmodified	_ARGNNRRKKT_					0	0	0			REV__ENSG00000197728|ENST00000646449|RPS26	REV__ENSG00000197728|ENST00000646449|RPS26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.23052978515625	3	400.905921	1199.69593	0.74975	0.00030058	1.9977	0.0008009	2.7475	0.0011015	400.9065108017319	21.952	0.94184	21.952	21.584	22.525	0					35	19	4	0	0	0	0.03519	1	756	756		22.562	0	1	92557	+		4023	28341	2329	2340	5468	5468					0.104074555944635
ARGNSIPAS	9	Unmodified	_ARGNSIPAS_					0	0	0		ENSG00000117643|ENST00000374332|MAN1C1;ENST00000263979.7_1_1:25944342-25980780:+|nuORF	ENSG00000117643|ENST00000374332|MAN1C1	ENSG00000117643|ENST00000374332|MAN1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.8913879394531	2	436.732866	871.451179	-0.52491	-0.00022924	2.0158	0.00088035	1.4909	0.00065111	436.7338370194367	64.822	0.71893	64.587	64.374	65.092	-0.2345					30	17	2	0	0	0	0.02435	1	7454	7454		26.693	0	1	182680			4024	3650	2330	2341	5469	5469					0.010311570607996146
ARGPFLRRG	9	Unmodified	_ARGPFLRRG_					0	0	0		ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2	ENSG00000150527|ENST00000640607|MIA2	ENSG00000150527|ENST00000640607|MIA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2914428710938	2	515.306867	1028.59918	-0.086075	-4.4355E-05	2.1444	0.001105	2.0584	0.0010607	515.3075270785024	40.334	1.0573	40.334	40.062	41.119	0					49	29	3	0	0	0	0.024506	1	3503	3503		10.866	0	1	973300			4025	6141	2331	2342	5470	5470					0.08602513105302023
ARGPIQIL	8	Unmodified	_ARGPIQIL_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.2745361328125	2	434.27417	866.533787	-0.24981	-0.00010849	0.28183	0.00012239	0.032024	1.3907E-05	434.27424686284786	54.734	1.8656	54.588	53.858	55.723	-0.14609					94	52	4	0	0	0	0.43637	2	5842	5820;5842		92.191	8.9034	1	11941000			4026	1100	2332	2343	5471;5472	5472					0.09518098859621205
ARGPIQIL	8	Unmodified	_ARGPIQIL_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.27410888671875	2	434.27417	866.533787	0.049146	2.1343E-05	-0.263	-0.00011421	-0.21385	-9.2869E-05	434.274048688637	54.85	1.3662	54.619	54.181	55.547	-0.23087					78	38	4	0	0	0	0.56067	1	5847	5847		79.939	8.5613	1	9281500			4027	1100	2332	2343	5473	5473					0.09518098859621205
ARGPLEPPSV	10	Unmodified	_ARGPLEPPSV_					0	0	0			REV__ENST00000397261.7_1_3:9848473-9848707:+|nuORF	REV__ENST00000397261.7_1_3:9848473-9848707:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7335815429688	2	511.785099	1021.55564	0.29575	0.00015136	-1.8716	-0.00095788	-1.5759	-0.00080652	512.284961802297	59.472	0.5271	59.223	58.93	59.457	-0.24841					26	12	3	0	0	0	0.03519	1	6528	6528		19.104	0	1	642140	+		4028	31766	2333	2344	5474	5474					0.04572858817527958
ARGPVRGR	8	Unmodified	_ARGPVRGR_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.28668212890625	2	434.764835	867.515117	0.27481	0.00011948	4.4175	0.0019206	4.6923	0.00204	434.7668050729221	52.316	0.42619	52.169	52.021	52.447	-0.14735					14	10	2	0	0	0	0.027866	1	5608	5608		31.955	0	1	94363			4029	7304	2334	2345	5475	5475					0.07605982008419687
ARGQATWPLL	10	Unmodified	_ARGQATWPLL_					0	0	0			REV__ENSG00000110944|ENST00000228534|IL23A	REV__ENSG00000110944|ENST00000228534|IL23A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.3116455078125	2	556.81419	1111.61383	0.86797	0.0004833	-3.9178	-0.0021815	-3.0498	-0.0016982	556.8121420150989	72.375	0.60797	72.385	72.21	72.818	0.0097733					25	14	3	0	0	0	0.03519	1	8736	8736		51.335	18.523	1	398120	+		4030	21885	2335	2346	5476	5476					0.06248540462820529
ARGQRGAV	8	Unmodified	_ARGQRGAV_					0	0	0			REV__ENST00000359866.8_1_19:17430707-17431082:+|nuORF	REV__ENST00000359866.8_1_19:17430707-17431082:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.26873779296875	2	407.735743	813.456933	-0.036551	-1.4903E-05	-3.2441	-0.0013227	-3.2806	-0.0013376	407.7347659718431	29.016	0.65577	29.016	28.53	29.186	0					25	15	2	0	0	0	0.027866	1	1693	1693		52.299	0	1	35498	+		4031	30890	2336	2347	5477	5477					0.04274300363135808
ARGRRRAEA	9	Unmodified	_ARGRRRAEA_					0	0	0		ENST00000440884.7_1_14:103852007-103852352:+|nuORF	ENST00000440884.7_1_14:103852007-103852352:+|nuORF	ENST00000440884.7_1_14:103852007-103852352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7474365234375	2	521.80248	1041.59041	0.5282	0.00027562	1.8212	0.00095033	2.3494	0.0012259	521.8032868290308	37.072	0.42867	36.863	36.685	37.114	-0.2092					19	10	2	0	0	0	0.024405	1	2928	2928		35.618	3.6634	1	291720			4032	14352	2337	2348	5478	5478					0.0712753946884277
ARGRTGSTS	9	Unmodified	_ARGRTGSTS_					0	0	0		ENST00000361283.2_1_13:115079997-115086655:+|nuORF	ENST00000361283.2_1_13:115079997-115086655:+|nuORF	ENST00000361283.2_1_13:115079997-115086655:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.74554443359375	2	446.733397	891.452242	2.1209	0.00094746	-1.5253	-0.0006814	0.59556	0.00026606	446.7340937154477	24.705	0.25977	24.525	24.374	24.634	-0.18089					9	5	2	0	0	0	0.023817	1	1083	1083		60.972	35.522	1	14468			4033	12791	2338	2349	5479	5479					0.0021737142973279333
ARGRYEPM	8	Unmodified	_ARGRYEPM_					0	0	0			REV__ENSG00000124557|ENST00000684113|BTN1A1	REV__ENSG00000124557|ENST00000684113|BTN1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.31878662109375	2	490.242544	978.470534	-0.39493	-0.00019361	-1.0756	-0.00052731	-1.4705	-0.00072092	490.24205105926234	66.955	0.16573	66.955	66.883	67.049	0					5	3	2	0	0	0	0.027866	1	7991	7991		17.365	0	1	91143	+		4034	22771	2339	2350	5480	5480					-0.019562099199333716
ARGVDVRP	8	Unmodified	_ARGVDVRP_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25152587890625	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0009	1	9583	9583		37.159	1.5408	1	1872200	+		4035	25140	2340	2351	5481	5481					0.04839453677379879
ARGVWIGVWMS	11	Unmodified	_ARGVWIGVWMS_					0	0	0			REV__ENST00000475696.5_1_2:220110721-220112662:+|nuORF	REV__ENST00000475696.5_1_2:220110721-220112662:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.2206726074219	3	421.221859	1260.64375	0.36012	0.00015169	-3.5888	-0.0015117	-3.2287	-0.00136	421.22033075402203	56.532	0.73496	56.324	56.006	56.741	-0.20801					61	18	4	0	0	0	0.99648	1	6126	6126		37.6	3.099	1	2780600	+		4036	33299	2341	2352	5482	5482					0.023851561364836016
ARGWQDLEKTF	11	Unmodified	_ARGWQDLEKTF_					0	0	0			REV__PPP2CB|p.V14Gfs*8|1|0.29|ENSG00000104695|chr8:30812381-30812382|-/C|frameshift_variant	REV__PPP2CB|p.V14Gfs*8|1|0.29|ENSG00000104695|chr8:30812381-30812382|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76678466796875	3	450.89821	1349.6728	0.071262	3.2132E-05	0.60044	0.00027074	0.6717	0.00030287	450.89837041414467	35.335	0.11309	35.119	35.024	35.137	-0.21555					4	2	2	0	0	0	0.02473	1	2662	2662		33.039	11.259	1	28880	+		4037	37396	2342	2353	5483	5483					0.011949719664698932
ARGYQGWF	8	Unmodified	_ARGYQGWF_					0	0	0		DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant;ENST00000556729.1_1_14:24108037-24109131:+|nuORF;ENST00000553896.5_1_14:24099332-24110898:+|nuORF;ENSG00000100867|ENST00000250383|DHRS2;nc|ENSG00000100867|Q13268-2|DHRS2	DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant	DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.80804443359375	2	492.737951	983.46135	-0.21457	-0.00010573	2.4355	0.0012	2.2209	0.0010943	492.73904362887197	51.701	0.58015	51.582	51.394	51.974	-0.11875					23	15	2	0	0	0	0.027866	1	5383	5383		26.796	13.837	1	288060			4038	637	2343	2354	5484	5484					-0.031042352139593277
ARGYQGWF	8	Unmodified	_ARGYQGWF_					0	0	0		DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant;ENST00000556729.1_1_14:24108037-24109131:+|nuORF;ENST00000553896.5_1_14:24099332-24110898:+|nuORF;ENSG00000100867|ENST00000250383|DHRS2;nc|ENSG00000100867|Q13268-2|DHRS2	DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant	DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.737951	983.46135	-2.0152	-0.00099296	3.7922	0.0018686	1.777	0.0008756	492.7396825773462	51.981	0.50658	51.712	51.548	52.054	-0.26903	0.065207	0.00069222	NaN	26.796	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191830			4039	637	2343	2354							-0.031042352139593277
ARGYQGWF	8	Unmodified	_ARGYQGWF_					0	0	0		DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant;ENST00000556729.1_1_14:24108037-24109131:+|nuORF;ENST00000553896.5_1_14:24099332-24110898:+|nuORF;ENSG00000100867|ENST00000250383|DHRS2;nc|ENSG00000100867|Q13268-2|DHRS2	DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant	DHRS2|p.P15L|1|0.34|ENSG00000100867|chr14:23638908-23638908|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.737951	983.46135	0.61909	0.00030505	1.4292	0.00070423	2.0483	0.0010093	492.7384564191243	51.83	0.47794	51.646	51.374	51.852	-0.18404	-0.00076005	-0.0016364	NaN	26.796	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212090			4040	637	2343	2354							-0.031042352139593277
ARHASAGLM	9	Unmodified	_ARHASAGLM_					0	0	0			REV__ENST00000417586.1_1_22:42528609-42528828:+|nuORF	REV__ENST00000417586.1_1_22:42528609-42528828:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2354431152344	2	457.237261	912.45997	0.017853	8.1629E-06	-3.7839	-0.0017302	-3.7661	-0.001722	457.2354161383707	22.275	0.80486	22.073	21.663	22.468	-0.20199					39	16	3	0	0	0	0.70186	1	755	755		45.952	1.4209	1	638860	+		4041	32098	2344	2355	5485	5485					0.00023807425634458923
ARHASAGLM	9	Unmodified	_ARHASAGLM_					0	0	0			REV__ENST00000417586.1_1_22:42528609-42528828:+|nuORF	REV__ENST00000417586.1_1_22:42528609-42528828:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.237261	912.45997	0.48	0.00021947	-3.9233	-0.0017939	-3.4433	-0.0015744	457.2353158148802	22.124	0.65055	21.935	21.723	22.374	-0.18894	-0.12295	-0.00030838	NaN	45.952	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476540	+		4042	32098	2344	2355							0.00023807425634458923
ARHASAGLM	9	Unmodified	_ARHASAGLM_					0	0	0			REV__ENST00000417586.1_1_22:42528609-42528828:+|nuORF	REV__ENST00000417586.1_1_22:42528609-42528828:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	457.237261	912.45997	0.017853	8.1629E-06	-3.7839	-0.0017302	-3.7661	-0.001722	457.2354161383707	22.275	0.80486	22.073	21.663	22.468	-0.20199	0.01512	-0.00018096	NaN	45.952	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638860	+		4043	32098	2344	2355							0.00023807425634458923
ARHIFGLKTDA	11	Unmodified	_ARHIFGLKTDA_					0	0	0			REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8803405761719	3	410.231412	1227.67241	0.075715	3.1061E-05	2.7617	0.0011329	2.8374	0.001164	410.23253004557637	33.622	0.52555	33.629	33.355	33.881	0.0066261					23	13	2	0	0	0	0.024809	1	2399	2399		17.167	0.44936	1	128810	+		4044	32603	2345	2356	5486	5486					0.06767597037287487
ARHLFKIQ	8	Unmodified	_ARHLFKIQ_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7142028808594	2	506.806168	1011.59778	-0.019564	-9.9152E-06	-0.0014147	-7.1698E-07	-0.020979	-1.0632E-05	507.30823001903593	34.906	0.56553	34.69	34.347	34.913	-0.21555					28	13	3	0	0	0	0.027866	1	2566	2566		12.959	0	1	185280			4045	9420	2346	2357	5487	5487					0.09244879016557661
ARHQQPSNI	9	Unmodified	_ARHQQPSNI_					0	0	0			REV__ENST00000310571.7_2_11:73638459-73638669:+|nuORF	REV__ENST00000310571.7_2_11:73638459-73638669:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2722778320312	2	525.775597	1049.53664	-1.0211	-0.00053689	-3.9155	-0.0020587	-4.9366	-0.0025956	525.7737692821269	39.279	0.39192	39.181	38.949	39.341	-0.098755					18	10	2	0	0	0	0.023007	1	3363	3363		66.429	0	1	3175800	+		4046	30189	2347	2358	5488	5488					0.01385322246483156
ARHRTKMRRKK	11	Unmodified	_ARHRTKMRRKK_					0	0	0		ENSG00000271447|ENST00000605424|MMP28;nc|ENSG00000271447|Q9H239-2|MMP28	ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.3188781738281	3	489.968639	1466.88409	-0.23293	-0.00011413	-1.4572	-0.00071398	-1.6901	-0.00082811	490.30155491235405	67.279	0.23869	67.303	67.191	67.43	0.023911					6	5	2	0	0	0	0.024865	1	7953	7953		8.4073	4.5638	1	73150			4047	11008	2348	2359	5489	5489					0.16931990247189788
ARHVEESVK	9	Unmodified	_ARHVEESVK_					0	0	0		ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7672119140625	2	527.78563	1053.55671	-0.85644	-0.00045202	-3.6211	-0.0019111	-4.4775	-0.0023632	527.78403716225	29.868	0.44516	29.876	29.637	30.082	0.0086689					15	10	2	0	0	0	0.024261	1	1839	1839		64.207	14.766	1	40489			4048	1586	2349	2360	5490	5490					0.03207073186422349
ARHVEESVK	9	Unmodified	_ARHVEESVK_					0	0	0		ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.78563	1053.55671	-0.6028	-0.00031815	1.082	0.00057107	0.4792	0.00025291	527.7856529694612	30.232	0.42597	29.988	29.696	30.122	-0.24415	0.053859	0.0017765	NaN	64.207	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89044			4049	1586	2349	2360							0.03207073186422349
ARHVEESVK	9	Unmodified	_ARHVEESVK_					0	0	0		ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	ENSG00000076604|ENST00000262395|TRAF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.78563	1053.55671	-0.092783	-4.8969E-05	-0.63463	-0.00033495	-0.72741	-0.00038392	527.7851577921995	30.106	0.34815	29.957	29.792	30.14	-0.14952	0.023108	-3.5512E-05	NaN	64.207	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124460			4050	1586	2349	2360							0.03207073186422349
ARHVLDPKV	9	Unmodified	_ARHVLDPKV_					0	0	0			REV__ENST00000507727.2_1_1:95449147-95492738:-|nuORF	REV__ENST00000507727.2_1_1:95449147-95492738:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.8091430664062	2	517.808908	1033.60326	-0.57012	-0.00029521	0.13532	7.0068E-05	-0.4348	-0.00022514	517.8088128483726	37.973	0.85992	37.794	37.522	38.381	-0.17929					46	24	3	0	0	0	0.72875	1	3085	3085		44.117	3.5442	1	2910400	+		4051	34054	2350	2361	5491	5491					0.08780557808381673
ARIAWAMQC	9	Unmodified	_ARIAWAMQC_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3197631835938	2	525.254597	1048.49464	-0.3106	-0.00016314	1.9571	0.001028	1.6465	0.00086486	525.755034219969	64.634	0.41391	64.68	64.448	64.862	0.045502					13	10	2	0	0	0	0.024457	1	7509	7509		29.15	13.508	1	62658	+		4052	36915	2351	2362	5492	5492					-0.027666927579048206
ARIEANTRTAL	11	Unmodified	_ARIEANTRTAL_					0	0	0			REV__nc|ENSG00000197043|P08133-2|ANXA6	REV__nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	405.8998107910156	3	405.898321	1214.67313	0.6286	0.00025515	2.9005	0.0011773	3.5291	0.0014324	405.89943667541786	23.764	0.9944	23.562	23.195	24.19	-0.20193					64	22	4	0	0	0	0.87596	1	988	988		62.166	12.133	1	1125800	+		4053	28254	2352	2363	5493	5493					0.0743839168633258
ARIEGDMIV	9	Oxidation (M)	_ARIEGDM(Oxidation (M))IV_		ARIEGDM(1)IV		ARIEGDM(100)IV	0	0	1		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27667236328125	2	510.263142	1018.51173	-0.18889	-9.6382E-05	-3.1098	-0.0015868	-3.2987	-0.0016832	510.2613382387306	72.999	1.1855	72.722	72.028	73.214	-0.2769					52	27	3	0	0	0	0.022411	1	8602	8602		101.6	35.171	1	544140			4054	3922	2353	2364	5494	5494		153			0.003215063288962483
ARIESECVTPK	11	Unmodified	_ARIESECVTPK_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	616.7981567382812	2	616.818812	1231.62307	-0.78086	-0.00048165	1.562	0.00096347	0.78115	0.00048183	616.820241089544	46.326	0.22707	46.124	45.967	46.194	-0.20226					9	5	2	0	0	0	0.02473	1	4427	4427		14.694	0	1	68196	+		4055	20465	2354	2365	5495	5495					0.016525209661494955
ARIFLWLS	8	Unmodified	_ARIFLWLS_					0	0	0			REV__ENST00000567109.5_1_16:83829835-83829925:+|nuORF	REV__ENST00000567109.5_1_16:83829835-83829925:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75714111328125	2	503.297645	1004.58074	-0.79318	-0.00039921	3.3316	0.0016768	2.5384	0.0012776	503.29987442247176	43.365	0.61905	43.365	43.002	43.621	0					26	16	3	0	0	0	0.027866	1	4076	4076		19.36	0	1	125430	+		4056	35314	2355	2366	5496	5496					0.07862958410760257
ARIFSIENS	9	Unmodified	_ARIFSIENS_					0	0	0			REV__ENST00000481468.1_1_3:158402378-158402495:+|nuORF	REV__ENST00000481468.1_1_3:158402378-158402495:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7564697265625	2	518.774731	1035.53491	-0.26155	-0.00013569	-1.5967	-0.00082835	-1.8583	-0.00096404	518.7740276270689	35.485	0.19838	35.273	35.115	35.314	-0.21246					6	4	2	0	0	0	0.024495	1	2688	2688		19.997	0	1	32044	+		4057	26297	2356	2367	5497	5497					0.018562684378593985
ARIFWLGLII	10	Unmodified	_ARIFWLGLII_					0	0	0		ENSG00000166676|ENST00000299866|TVP23A;nc|ENSG00000166676|A6NH52-2|TVP23A	ENSG00000166676|ENST00000299866|TVP23A	ENSG00000166676|ENST00000299866|TVP23A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.584228515625	3	401.253376	1200.7383	0.13772	5.526E-05	-1.3716	-0.00055036	-1.2339	-0.0004951	401.25277582280825	25.454	0.6341	25.227	24.842	25.476	-0.22683					19	14	2	0	0	0	0.03519	1	1219	1219		16.717	0	1	183450			4058	7593	2357	2368	5498	5498					0.14596037950150276
ARIFWLGLII	10	Unmodified	_ARIFWLGLII_					0	0	0		ENSG00000166676|ENST00000299866|TVP23A;nc|ENSG00000166676|A6NH52-2|TVP23A	ENSG00000166676|ENST00000299866|TVP23A	ENSG00000166676|ENST00000299866|TVP23A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	401.253376	1200.7383	-0.88415	-0.00035477	-8.3872	-0.0033654	-9.2713	-0.0037202	401.25051158322367	25.686	0.38554	25.514	25.365	25.75	-0.17151	0.14342	-0.0074956	NaN	29.17	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36350			4059	7593	2357	2368							0.14596037950150276
ARIIDGTQY	9	Unmodified	_ARIIDGTQY_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7808227539062	2	518.774731	1035.53491	-0.45741	-0.00023729	0.94867	0.00049215	0.49126	0.00025485	518.7770042478863	42.111	1.0067	42.137	41.784	42.79	0.026012					35	28	2	0	0	0	0.024457	1	3785	3785		37.159	18.897	1	473950	+		4060	25624	2358	2369	5499	5499					0.018562684378593985
ARIIRVTQ	8	Unmodified	_ARIIRVTQ_					0	0	0			REV__ENSG00000278540|ENST00000616317|ACACA	REV__ENSG00000278540|ENST00000616317|ACACA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.27716064453125	2	478.803626	955.592698	-0.043249	-2.0708E-05	-0.21535	-0.00010311	-0.2586	-0.00012382	478.8033964249769	35.202	0.43599	35.202	34.981	35.417	0					23	11	3	0	0	0	0.027866	1	2707	2707		27.882	0	1	307780	+		4061	29218	2359	2370	5500	5500					0.11312575153931448
ARIKGNAE	8	Unmodified	_ARIKGNAE_					0	0	0			REV__ENST00000551157.6_1_12:53896618-53896663:+|nuORF	REV__ENST00000551157.6_1_12:53896618-53896663:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2324523925781	2	429.743234	857.471915	-0.70268	-0.00030197	-0.57666	-0.00024781	-1.2793	-0.00054979	429.7426981336341	25.538	0.76128	25.503	25.351	26.113	-0.034395					38	17	3	0	0	0	0.027866	1	1269	1269		18.324	0	1	322420	+		4062	34926	2360	2371	5501	5501					0.03747747440468174
ARIKPNAI	8	Unmodified	_ARIKPNAI_					0	0	0		ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19332177-19336426:+|nuORF	ENSG00000137145|ENST00000434457|DENND4C	ENSG00000137145|ENST00000434457|DENND4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7679138183594	2	441.779619	881.544686	0.37528	0.00016579	3.4125	0.0015076	3.7878	0.0016734	441.7808840019633	102.85	0.18794	102.85	102.68	102.86	-0.0046005					7	4	2	0	0	0	0.027866	1	13090	13090		13.775	0	1	79886			4063	5092	2361	2372	5502	5502					0.09917501233894654
ARILPPSAI	9	Unmodified	_ARILPPSAI_					0	0	0			REV__ENST00000333082.7_2_20:1145765-1146050:+|nuORF	REV__ENST00000333082.7_2_20:1145765-1146050:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.29022216796875	2	469.295102	936.575651	-0.30804	-0.00014456	-0.29348	-0.00013773	-0.60152	-0.00028229	469.29528167187397	27.576	0.60131	27.576	27.361	27.963	0					36	15	4	0	0	0	0.024381	1	1575	1575		37.159	14.117	1	207600	+		4064	30502	2362	2373	5503	5503					0.10482654548115988
ARILPPSAI	9	Unmodified	_ARILPPSAI_					0	0	0			REV__ENST00000333082.7_2_20:1145765-1146050:+|nuORF	REV__ENST00000333082.7_2_20:1145765-1146050:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	469.295102	936.575651	-0.14036	-6.5872E-05	1.0139	0.0004758	0.87349	0.00040992	469.29522498936467	27.54	0.48733	27.527	27.352	27.84	-0.012983	-0.066151	0.00070327	NaN	37.159	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209510	+		4065	30502	2362	2373							0.10482654548115988
ARILSQVAL	9	Unmodified	_ARILSQVAL_					0	0	0			REV__ENST00000471460.1_1_10:50964809-50966620:-|nuORF	REV__ENST00000471460.1_1_10:50964809-50966620:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.8121032714844	2	485.805834	969.597115	-0.12566	-6.1045E-05	1.2475	0.00060606	1.1219	0.00054502	485.80551527238737	62.481	0.62148	62.223	61.897	62.518	-0.25824					37	16	3	0	0	0	0.39228	1	7047	7047		66.429	3.123	1	1702600	+		4066	21578	2363	2374	5504	5504					0.11110039576851705
ARINALKES	9	Unmodified	_ARINALKES_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.28973388671875	2	501.290548	1000.56654	0.26855	0.00013462	-0.67377	-0.00033776	-0.40522	-0.00020314	501.29013148905653	98.06	1.8047	98.07	97.728	99.533	0.010239					61	41	2	0	0	0	0.87448	1	12495	12495		34.173	2.2177	1	1873800			4067	7992	2364	2375	5505	5505					0.06628261191792717
ARINVVEPF	9	Unmodified	_ARINVVEPF_					0	0	0		ENST00000269601.9_1_18:77733562-77733688:-|nuORF	ENST00000269601.9_1_18:77733562-77733688:-|nuORF	ENST00000269601.9_1_18:77733562-77733688:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3103637695312	2	522.795466	1043.57638	-0.77968	-0.00040761	-1.136	-0.0005939	-1.9157	-0.0010015	523.2946032713245	60.644	0.40842	60.43	60.235	60.643	-0.21339					14	10	2	0	0	0	0.024436	1	6984	6984		38.806	9.6566	1	68979			4068	11638	2365	2376	5506	5506					0.056334491971938405
ARIQEQLVE	9	Unmodified	_ARIQEQLVE_					0	0	0			REV__ENSG00000157470|ENST00000288228|FAM81A	REV__ENSG00000157470|ENST00000288228|FAM81A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.7302856445312	2	543.301113	1084.58767	-2.381	-0.0012936	2.5879	0.001406	0.20688	0.0001124	543.3024489625863	52.158	0.39877	51.889	51.691	52.089	-0.26903					17	10	2	0	0	0	0.024466	1	5376	5376		24.519	0	1	341280	+		4069	25133	2366	2377	5507	5507					0.048762265006644157
ARISLARAVYK	11	Unmodified	_ARISLARAVYK_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	625.3670043945312	2	624.382771	1246.75099	-0.38776	-0.00024211	-4.0624	-0.0025365	-4.4501	-0.0027786	624.3801274406578	105.32	0.37122	105.32	105.15	105.52	-0.0016022					26	10	3	0	0	0	0.024762	1	13434	13434		37.812	16.126	1	774310			4070	722;18025	2367	2378	5508	5508					0.13748449342347158
ARIVHRSLL	9	Unmodified	_ARIVHRSLL_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7904663085938	2	532.838	1063.66145	-0.99618	-0.0005308	-3.1091	-0.0016566	-4.1053	-0.0021874	532.8360633826063	56.16	0.79914	56.258	55.782	56.581	0.097893					48	21	3	0	0	0	0.024319	1	6115	6115		31.53	0	1	470730	+		4071	23549	2368	2379	5509	5509					0.13216239453663547
ARKAALPQ	8	Unmodified	_ARKAALPQ_					0	0	0			REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2569580078125	2	427.763969	853.513385	0.25537	0.00010924	-2.5304	-0.0010824	-2.275	-0.00097317	427.7627670173763	38.87	0.17915	38.644	38.523	38.702	-0.2257					7	4	2	0	0	0	0.027866	1	3235	3235		18.324	4.5491	1	96044	+		4072	28016	2369	2380	5510	5510					0.0807692819979593
ARKAALPQ	8	Unmodified	_ARKAALPQ_					0	0	0			REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	427.763969	853.513385	-0.36844	-0.0001576	-0.10126	-4.3317E-05	-0.4697	-0.00020092	427.7631664328545	38.864	0.22429	38.641	38.497	38.721	-0.22311	-0.0016703	0.0010425	NaN	24.203	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72579	+		4073	28016	2369	2380							0.0807692819979593
ARKEELKK	8	Unmodified	_ARKEELKK_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3082580566406	2	501.308741	1000.60293	-1.5723	-0.00078819	1.0113	0.00050699	-0.56094	-0.0002812	501.30910148041846	21.549	0.72948	21.336	21.02	21.749	-0.2128					35	14	4	0	0	0	0.94517	1	647	647		45.952	0	1	667860	+		4074	24805	2370	2381	5511	5511					0.10265138088516323
ARKEGAAPFL	10	Unmodified	_ARKEGAAPFL_					0	0	0		ENSG00000144644|ENST00000282538|GADL1;nc|ENSG00000144644|Q6ZQY3-3|GADL1	ENSG00000144644|ENST00000282538|GADL1	ENSG00000144644|ENST00000282538|GADL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.3023071289062	2	530.300916	1058.58728	-0.57846	-0.00030676	3.3562	0.0017798	2.7777	0.001473	530.3024557169856	30.357	0.71823	30.112	29.82	30.538	-0.24415					38	16	3	0	0	0	0.37169	1	1928	1928		101.6	22.15	1	827060			4075	5755	2371	2382	5512	5512					0.0603285157146729
ARKEVLKV	8	Unmodified	_ARKEVLKV_					0	0	0			REV__ENSG00000105373|ENST00000246802|NOP53	REV__ENSG00000105373|ENST00000246802|NOP53	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.80841064453125	2	471.808377	941.6022	0.65627	0.00030963	-0.63977	-0.00030185	0.016498	7.7838E-06	471.80798184376744	40.57	1.0797	40.57	40.281	41.36	0					76	30	4	0	0	0	0.4075	1	3592	3592		96.19	0.37527	1	8176800	+		4076	21519	2372	2383	5513	5513					0.12906343439476586
ARKFEEMNA	9	Unmodified	_ARKFEEMNA_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3238525390625	2	548.266216	1094.51788	-0.45263	-0.00024816	-2.6715	-0.0014647	-3.1242	-0.0017129	548.2642049796178	75.257	0.70753	75.267	74.973	75.68	0.010376					50	18	4	0	0	0	0.024457	1	9131	9131		15.642	0	1	1549100			4077	6489	2373	2384	5514	5514					-0.025599754396125718
ARKIKEAVLS	10	Unmodified	_ARKIKEAVLS_					0	0	0		ENST00000275569.8_1_7:76239477-76254863:-|nuORF	ENST00000275569.8_1_7:76239477-76254863:-|nuORF	ENST00000275569.8_1_7:76239477-76254863:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3322143554688	2	557.850773	1113.68699	-0.3469	-0.00019352	0.093823	5.2339E-05	-0.25308	-0.00014118	557.8508906095973	59.096	0.64202	58.908	58.623	59.265	-0.18795					38	15	3	0	0	0	0.03519	1	6558	6558		60.118	0	1	548070			4078	11688	2374	2385	5515	5515					0.1346966918540602
ARKIKPKPQ	9	Unmodified	_ARKIKPKPQ_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENST00000513811.5_1_4:15471657-15545375:+|nuORF;ENST00000514450.2_1_4:15471657-15513157:+|nuORF	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.27197265625	2	533.3482	1064.68185	0.17805	9.4961E-05	-1.0147	-0.00054117	-0.83661	-0.0004462	533.3475567979217	55.641	0.50229	55.641	55.39	55.892	0					22	13	2	0	0	0	0.024487	1	6145	6145		24.203	0	1	180170			4079	1114	2375	2386	5516	5516					0.1520941011344803
ARKISETF	8	Unmodified	_ARKISETF_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2664794921875	2	476.266542	950.51853	-0.14156	-6.7422E-05	-0.49715	-0.00023677	-0.63871	-0.0003042	476.2663416797438	31.6	1.9286	31.415	31.023	32.952	-0.18503					131	46	5	0	0	0	0.53523	1	2097	2097		82.305	2.3658	1	21439000			4080	7493	2376	2387	5517	5517					0.041291872717465594
ARKKFVIPL	9	Unmodified	_ARKKFVIPL_					0	0	0		ENST00000592905.5_1_19:45918043-45926632:-|nuORF;ENST00000588300.1_1_19:45920077-45926632:-|nuORF;nc|ENSG00000012061|P07992-4|ERCC1;nc|ENSG00000012061|P07992-2|ERCC1;ENSG00000012061|ENST00000300853|ERCC1;nc|ENSG00000012061|P07992-3|ERCC1	ENST00000592905.5_1_19:45918043-45926632:-|nuORF	ENST00000592905.5_1_19:45918043-45926632:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3291625976562	2	536.355494	1070.69644	0.26891	0.00014423	3.7851	0.0020302	4.054	0.0021744	536.3577264459234	18.973	0.24638	18.812	18.688	18.935	-0.16079					11	4	3	0	0	0	0.024262	1	370	370		57.811	0	1	37463			4081	17384	2377	2388	5518	5518					0.1639148226161069
ARKKPTNS	8	Unmodified	_ARKKPTNS_					0	0	0		ENST00000307771.7_1_X:15833867-15833951:+|nuORF	ENST00000307771.7_1_X:15833867-15833951:+|nuORF	ENST00000307771.7_1_X:15833867-15833951:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7609558105469	2	451.264333	900.514114	0.15429	6.9625E-05	-3.806	-0.0017175	-3.6517	-0.0016479	451.2627409549998	22.42	0.75612	22.218	21.712	22.468	-0.20199					25	15	3	0	0	0	0.027866	1	761	761		11.511	0	1	170660			4082	12014	2378	2389	5519	5519					0.059877228488517176
ARKKRAGAP	9	Unmodified	_ARKKRAGAP_					0	0	0			REV__ENSG00000100078|ENST00000215885|PLA2G3	REV__ENSG00000100078|ENST00000215885|PLA2G3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.79278564453125	2	477.801417	953.588282	0.52971	0.0002531	2.4871	0.0011883	3.0168	0.0014414	477.80254946339494	50.691	0.44404	50.691	50.512	50.956	0					17	12	2	0	0	0	0.024354	1	5332	5332		38.806	0	1	246200	+		4083	21044	2379	2390	5520	5520					0.10963110731029246
ARKKTLKV	8	Unmodified	_ARKKTLKV_					0	0	0			REV__GLI1|p.V537Sfs*4|1|0.08|ENSG00000111087|chr12:57470341-57470342|-/C|frameshift_variant	REV__GLI1|p.V537Sfs*4|1|0.08|ENSG00000111087|chr12:57470341-57470342|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.31243896484375	2	472.324194	942.633835	-0.75433	-0.00035629	4.2019	0.0019846	3.4475	0.0016283	472.3267524087538	45.011	0.11639	44.799	44.715	44.831	-0.21109					4	2	2	0	0	0	0.027866	1	4222	4222		13.775	0	1	44951	+		4084	21893	2380	2391	5521	5521					0.16022336193429965
ARKLNEDHS	9	Unmodified	_ARKLNEDHS_					0	0	0			REV__ENST00000583543.1_1_17:57298054-57326181:+|nuORF	REV__ENST00000583543.1_1_17:57298054-57326181:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2586059570312	2	535.272887	1068.53122	-0.4921	-0.00026341	-2.686	-0.0014377	-3.1781	-0.0017012	535.2711629961867	53.8	1.3815	53.8	53.011	54.393	0					94	38	3	0	0	0	0.024374	1	5792	5792		40.778	17.736	1	1639000	+		4085	24924	2381	2392	5522	5522					-0.0003040133599370165
ARKLNEDHS	9	Unmodified	_ARKLNEDHS_					0	0	0			REV__ENST00000583543.1_1_17:57298054-57326181:+|nuORF	REV__ENST00000583543.1_1_17:57298054-57326181:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2586059570312	2	535.272887	1068.53122	-0.67224	-0.00035983	-2.6024	-0.001393	-3.2746	-0.0017528	535.2712383932136	53.845	1.282	53.697	53.096	54.378	-0.14723					78	35	3	0	0	0	0.024427	1	5787	5787		26.693	0	1	1644500	+		4086	24924	2381	2392	5523	5523					-0.0003040133599370165
ARKMNALHM	9	Unmodified	_ARKMNALHM_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3423461914062	2	536.281146	1070.54774	-0.77738	-0.00041689	3.6865	0.001977	2.9091	0.0015601	536.7867316328015	27.161	0.18063	27.161	27.034	27.215	0					5	4	2	0	0	0	0.024506	1	1445	1445		30.504	0	1	61981			4087	5768	2382	2393	5524	5524					0.015286850247321127
ARKMPHAL	8	Unmodified	_ARKMPHAL_					0	0	0		ENST00000494601.5_1_2:172779141-172779468:+|nuORF	ENST00000494601.5_1_2:172779141-172779468:+|nuORF	ENST00000494601.5_1_2:172779141-172779468:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.2512512207031	2	462.265822	922.517091	-0.38083	-0.00017605	0.70746	0.00032704	0.32663	0.00015099	462.2669494404765	30.355	0.24881	30.111	30.035	30.284	-0.24415					10	5	2	0	0	0	0.027866	1	1942	1942		54.765	17.736	1	41360			4088	15533	2383	2394	5525	5525					0.05273274702005892
ARKPEEPVR	9	Unmodified	_ARKPEEPVR_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3084716796875	2	541.309272	1080.60399	-0.62264	-0.00033704	0.20891	0.00011308	-0.41373	-0.00022396	541.3092437878355	42.849	1.115	42.849	42.289	43.404	0					76	30	3	0	0	0	0.5973	1	3970	3970		52.937	0.63753	1	3208100	+		4089	25017	2384	2395	5526	5526					0.06691352457414723
ARKPLFFGE	9	Unmodified	_ARKPLFFGE_					0	0	0		ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.781494140625	2	532.798009	1063.58147	0.47391	0.0002525	1.1051	0.00058878	1.579	0.00084128	533.2999139180214	59.494	0.40556	59.296	59.132	59.537	-0.19742					15	9	2	0	0	0	0.024263	1	6589	6589		60.972	16.595	1	167900			4090	1589;14901	2385	2396	5527	5527					0.05221753059799994
ARKPLFFGE	9	Unmodified	_ARKPLFFGE_					0	0	0		ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.798009	1063.58147	0.13382	7.1301E-05	-3.704	-0.0019735	-3.5702	-0.0019022	532.7957138924485	58.932	0.83909	58.932	58.531	59.37	0	-0.092084	-0.00039863	NaN	60.972	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843400			4091	1589;14901	2385	2396							0.05221753059799994
ARKPLFFGE	9	Unmodified	_ARKPLFFGE_					0	0	0		ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.798009	1063.58147	1.3353	0.00071147	-4.1654	-0.0022193	-2.8301	-0.0015079	532.795150038219	59.164	0.79441	58.977	58.611	59.406	-0.18705	-0.047726	-0.00089025	NaN	60.972	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904340			4092	1589;14901	2385	2396							0.05221753059799994
ARKPLFFGE	9	Unmodified	_ARKPLFFGE_					0	0	0		ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	ENST00000469228.1_1_10:104853627-104854248:-|nuORF;nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.798009	1063.58147	0.092382	4.9221E-05	-2.9413	-0.0015671	-2.8489	-0.0015179	532.7957381292514	58.804	0.98481	58.892	58.406	59.39	0.087555	-0.13242	0.00041417	NaN	60.972	57	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	861870			4093	1589;14901	2385	2396							0.05221753059799994
ARKQKRER	8	Unmodified	_ARKQKRER_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3295288085938	2	536.328331	1070.64211	1.5633	0.00083843	0.16921	9.0752E-05	1.7325	0.00092919	536.3284676516844	19.038	1.3354	18.805	18.533	19.868	-0.23345					74	26	5	0	0	0	1.0198	1	403	403		34.173	2.6427	1	7075300			4094	1918	2386	2397	5528	5528					0.10961283162737345
ARKRALAR	8	Unmodified	_ARKRALAR_					0	0	0		RSPH3|p.N354Rfs*32|1|0.16|ENSG00000130363|chr6:158982546-158982547|-/TC|frameshift_variant;ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	RSPH3|p.N354Rfs*32|1|0.16|ENSG00000130363|chr6:158982546-158982547|-/TC|frameshift_variant	RSPH3|p.N354Rfs*32|1|0.16|ENSG00000130363|chr6:158982546-158982547|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.31036376953125	2	471.30941	940.604266	-0.043647	-2.0571E-05	2.2966	0.0010824	2.253	0.0010618	471.3104944703835	48.396	1.4355	48.396	48.037	49.473	0					93	40	4	0	0	0	0.39824	1	4934	4934		97.473	1.2823	1	11903000			4095	4413	2387	2398	5529	5529					0.13158816967927578
ARKRALAR	8	Unmodified	_ARKRALAR_					0	0	0		RSPH3|p.N354Rfs*32|1|0.16|ENSG00000130363|chr6:158982546-158982547|-/TC|frameshift_variant;ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	RSPH3|p.N354Rfs*32|1|0.16|ENSG00000130363|chr6:158982546-158982547|-/TC|frameshift_variant	RSPH3|p.N354Rfs*32|1|0.16|ENSG00000130363|chr6:158982546-158982547|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.31072998046875	2	471.30941	940.604266	-0.11805	-5.5637E-05	2.5625	0.0012077	2.4444	0.0011521	471.3105974486802	48.537	1.5779	48.384	48.092	49.669	-0.15277					99	43	4	0	0	0	0.56067	1	4939	4939		79.939	0.48821	1	9454000			4096	4413	2387	2398	5530	5530					0.13158816967927578
ARKRGKVLSYW	11	Unmodified	_ARKRGKVLSYW_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2621154785156	3	455.270089	1362.78844	0.17191	7.8264E-05	-3.2687	-0.0014881	-3.0968	-0.0014099	455.6032250034062	19.024	0.29645	18.906	18.756	19.052	-0.11872					9	5	2	0	0	0	0.024809	1	339	339		12.433	0.50046	1	11546			4097	18776	2388	2399	5531	5531					0.12155540608000592
ARKRGKVLSYW	11	Unmodified	_ARKRGKVLSYW_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	455.270089	1362.78844	3.3714	0.0015349	-6.7087	-0.0030543	-3.3373	-0.0015194	455.60156644403565	19.024	0.29638	19.087	18.942	19.239	0.063307	-0.0060755	-0.0028082	NaN	12.433	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11058			4098	18776	2388	2399							0.12155540608000592
ARKRGKVLSYW	11	Unmodified	_ARKRGKVLSYW_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	455.270089	1362.78844	0.542	0.00024676	-3.7523	-0.0017083	-3.2103	-0.0014616	455.2684544993492	19.283	0.34744	19.122	18.935	19.282	-0.16079	0.029142	0.0012297	NaN	12.433	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21134			4099	18776	2388	2399							0.12155540608000592
ARKRGKVLSYW	11	Unmodified	_ARKRGKVLSYW_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	455.270089	1362.78844	0.71264	0.00032444	-3.9019	-0.0017764	-3.1893	-0.001452	455.60287310846877	19.381	0.49744	19.181	18.958	19.455	-0.2001	0.088074	0.0010254	NaN	12.433	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26059			4100	18776	2388	2399							0.12155540608000592
ARKRGKVLSYW	11	Unmodified	_ARKRGKVLSYW_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	455.270089	1362.78844	1.679	0.0007644	-5.0499	-0.0022991	-3.3709	-0.0015347	455.2676778882436	19.402	0.29769	19.169	18.978	19.275	-0.23345	0.076151	-0.00054252	NaN	12.433	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22499			4101	18776	2388	2399							0.12155540608000592
ARKRTLADA	9	Unmodified	_ARKRTLADA_					0	0	0			REV__TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	REV__TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3082275390625	2	501.296165	1000.57778	-1.294	-0.00064869	1.0861	0.00054444	-0.20795	-0.00010424	501.2963955487656	21.661	0.38639	21.449	21.315	21.701	-0.2128					12	7	2	0	0	0	0.024263	1	659	659		60.972	0	1	17726	+		4102	20242	2389	2400	5532	5532					0.07751083285938876
ARKSGKAL	8	Unmodified	_ARKSGKAL_					0	0	0		ENST00000566442.5_2_15:42565903-42566053:+|nuORF;ENST00000561871.1_2_15:42565903-42566409:+|nuORF	ENST00000566442.5_2_15:42565903-42566053:+|nuORF	ENST00000566442.5_2_15:42565903-42566053:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2484130859375	2	415.763969	829.513385	-0.80116	-0.00033309	1.0402	0.00043249	0.23907	9.9398E-05	415.76416814753304	36.02	0.51847	35.978	35.797	36.315	-0.042454					20	14	2	0	0	0	0.027866	1	2788	2788		21.96	0	1	658740			4103	16836	2390	2401	5533	5533					0.09180928199793925
ARKSQIPAS	9	Unmodified	_ARKSQIPAS_					0	0	0		ENST00000218516.3_1_X:100658806-100662812:-|nuORF	ENST00000218516.3_1_X:100658806-100662812:-|nuORF	ENST00000218516.3_1_X:100658806-100662812:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2777099609375	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.85329	1	10320	10320		35.618	0.41757	1	7158600			4104	11169	2391	2402	5534	5534					0.060319920203255606
ARKSQIPAS	9	Unmodified	_ARKSQIPAS_					0	0	0		ENST00000218516.3_1_X:100658806-100662812:-|nuORF	ENST00000218516.3_1_X:100658806-100662812:-|nuORF	ENST00000218516.3_1_X:100658806-100662812:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27813720703125	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.94809	1	9934	9934		29.15	1.2673	1	7407200			4105	11169	2391	2402	5535	5535					0.060319920203255606
ARKSVHSGQL	10	Unmodified	_ARKSVHSGQL_					0	0	0			REV__nc|ENSG00000105176|O94763-4|URI1	REV__nc|ENSG00000105176|O94763-4|URI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.8112182617188	2	541.806897	1081.59924	-1.1376	-0.00061635	2.7583	0.0014944	1.6207	0.00087809	541.8082200443848	29.22	1.5305	29.223	28.506	30.036	0.0031357					96	37	4	0	0	0	0.75651	1	1757	1757		63.534	4.7519	1	2398100	+		4106	36536	2392	2403	5536	5536					0.06170468314667232
ARKVPLQPSKQ	11	Unmodified	_ARKVPLQPSKQ_					0	0	0		ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	626.3826293945312	2	626.380229	1250.7459	-0.27721	-0.00017364	-0.73824	-0.00046242	-1.0154	-0.00063605	626.3796667254875	104.41	0.99722	104.4	104.07	105.07	-0.0032196					76	28	5	0	0	0	1.03	1	13367	13367		20.837	0	1	2578900			4107	3240	2393	2404	5537	5537					0.1305614547973164
ARKWPNKRRRK	11	Unmodified	_ARKWPNKRRRK_					0	0	0		ENSG00000156860|ENST00000356166|FBRS;ENST00000498588.1_1_16:30671247-30671787:+|nuORF;ENST00000484152.1_1_16:30671247-30673851:+|nuORF	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7963562011719	3	499.311282	1494.91202	0.096916	4.8391E-05	-1.2527	-0.00062547	-1.1557	-0.00057708	499.3107035130951	18.342	0.24791	18.138	18.014	18.262	-0.20371					8	4	2	0	0	0	0.024902	1	275	275		0.31226	0	1	18088			4108	6554	2394	2405	5538	5538					0.18435636498929853
ARLAAFPAHHG	11	Unmodified	_ARLAAFPAHHG_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557314.5_1_14:20839728-20850189:-|nuORF	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.8429565429688	2	574.309606	1146.60466	-0.52448	-0.00030122	1.3722	0.00078806	0.8477	0.00048684	574.3101990164782	26.921	1.6264	26.679	25.797	27.423	-0.24217					62	41	2	0	0	0	0.024729	1	1465	1465		15.642	0	1	161660			4109	4358	2395	2406	5539	5539					0.03722191897122684
ARLAGILSSAS	11	Unmodified	_ARLAGILSSAS_					0	0	0			REV__ENST00000321599.8_2_3:49764036-49764180:-|nuORF	REV__ENST00000321599.8_2_3:49764036-49764180:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.303466796875	2	523.303655	1044.59276	-0.20164	-0.00010552	0.43177	0.00022595	0.23013	0.00012043	523.3037912633964	99.824	1.0285	99.834	99.446	100.47	0.010117					42	25	2	0	0	0	1.0344	1	12731	12731		29.17	0	1	1714900	+		4110	30347	2396	2407	5540	5540					0.07224530363282611
ARLCHDCARYR	11	Unmodified	_ARLCHDCARYR_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.8880920410156	3	455.220524	1362.63974	-1.0592	-0.00048218	1.3803	0.00062834	0.32108	0.00014616	455.2214093021649	37.777	0.29406	37.559	37.424	37.718	-0.21848					11	7	2	0	0	0	0.024751	1	3051	3051		34.087	0	1	68453	+		4111	23563	2397	2408	5541	5541					-0.027072566289007227
ARLCTTAGHAI	11	Unmodified	_ARLCTTAGHAI_					0	0	0			REV__nc|ENSG00000127946|O00291-3|HIP1	REV__nc|ENSG00000127946|O00291-3|HIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.7283935546875	2	557.295307	1112.57606	-0.13959	-7.7792E-05	1.4598	0.00081353	1.3202	0.00073574	557.7989414012369	57.116	0.68765	57.212	56.815	57.503	0.095306					38	18	4	0	0	0	0.024803	1	6370	6370		44.377	0	1	524530	+		4112	22953	2398	2409	5542	5542					0.024277062056626164
ARLDTNELLTV	11	Unmodified	_ARLDTNELLTV_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	622.866455078125	2	622.845884	1243.67722	0.68937	0.00042937	4.3591	0.002715	5.0485	0.0031444	622.8484444450949	74.524	0.50458	74.265	74.114	74.619	-0.25887					17	11	2	0	0	0	0.02473	1	9127	9127		30.318	17.506	1	282530			4113	5949	2399	2410	5543	5543					0.06512436389380127
ARLEEDKEE	9	Unmodified	_ARLEEDKEE_					0	0	0		nc|ENSG00000173588|Q9Y592-2|CEP83;ENSG00000173588|ENST00000397809|CEP83	nc|ENSG00000173588|Q9Y592-2|CEP83	nc|ENSG00000173588|Q9Y592-2|CEP83	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3114624023438	2	559.769842	1117.52513	-1.5621	-0.0008744	-1.7883	-0.001001	-3.3503	-0.0018754	560.2703871847389	52.326	0.69887	52.057	51.656	52.354	-0.26903					26	18	2	0	0	0	0.024418	1	5374	5374		37.812	0	1	119640			4114	8389	2400	2411	5544	5544					-0.028929643581932396
ARLEEENEE	9	Unmodified	_ARLEEENEE_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2;ENST00000463491.1_1_20:35457204-35467793:-|nuORF	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3114624023438	2	559.75165	1117.48875	-2.0063	-0.001123	1.6274	0.00091095	-0.37884	-0.00021205	559.7523930976741	51.955	0.83812	51.686	51.4	52.238	-0.26903					31	22	2	0	0	0	0.024418	1	5374	5374		37.812	15.852	1	564040			4115	6111	2401	2412	5545	5545					-0.0652984125488274
ARLFLFVLL	9	Unmodified	_ARLFLFVLL_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.8193359375	2	546.35242	1090.69029	-1.2268	-0.00067027	-3.5094	-0.0019173	-4.7362	-0.0025876	546.3503090931129	64.703	1.1552	64.703	64.203	65.358	0					64	31	3	0	0	0	0.024354	1	7596	7596		47.916	0	1	328710	+		4116	27310	2402	2413	5546	5546					0.1485696403010479
ARLFLFVLL	9	Unmodified	_ARLFLFVLL_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.8189086914062	2	546.35242	1090.69029	-0.72093	-0.00039388	-3.4649	-0.001893	-4.1858	-0.0022869	546.3502459861505	65.078	0.72556	64.844	64.529	65.255	-0.2345					25	17	2	0	0	0	0.024506	1	7376	7376		30.504	1.3541	1	94762	+		4117	27310	2402	2413	5547	5547					0.1485696403010479
ARLFTLVGK	9	Unmodified	_ARLFTLVGK_					0	0	0			REV__ENST00000257915.9_1_12:51566268-51566466:-|nuORF	REV__ENST00000257915.9_1_12:51566268-51566466:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.253173828125	2	502.816202	1003.61785	-0.21913	-0.00011018	2.871	0.0014436	2.6518	0.0013334	502.8158402476879	44.605	0.72672	44.642	44.34	45.067	0.0369					62	20	5	0	0	0	0.02435	1	4219	4219		26.693	8.3685	1	432890	+		4118	29572	2403	2414	5548	5548					0.11618629956524273
ARLGGLFGRT	10	Unmodified	_ARLGGLFGRT_					0	0	0			REV__ENST00000551835.5_1_12:57998631-57999993:+|nuORF	REV__ENST00000551835.5_1_12:57998631-57999993:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.31494140625	2	524.306532	1046.59851	0.51295	0.00026894	-1.3111	-0.00068742	-0.79815	-0.00041848	524.3053699912336	71.566	1.6923	71.36	71.094	72.787	-0.20614					104	40	5	0	0	0	0.91448	1	8349	8349		53.089	6.3225	1	10042000	+		4119	34912	2404	2415	5549	5549					0.07707673665618131
ARLHPSWSP	9	Unmodified	_ARLHPSWSP_					0	0	0			REV__ENST00000300682.14_2_17:77083755-77083917:+|nuORF	REV__ENST00000300682.14_2_17:77083755-77083917:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3043212890625	2	525.777608	1049.54066	-0.010406	-5.4711E-06	0.29275	0.00015392	0.28235	0.00014845	525.7775552928559	69.721	0.57632	69.47	69.156	69.732	-0.25063					28	13	3	0	0	0	0.024381	1	8116	8116		37.159	9.2769	1	250050	+		4120	30048	2405	2416	5550	5550					0.01787411740178868
ARLIGRSI	8	Unmodified	_ARLIGRSI_					0	0	0			REV__ENST00000264658.10_1_17:37455327-37457306:-|nuORF	REV__ENST00000264658.10_1_17:37455327-37457306:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.77142333984375	2	443.285069	884.555585	-0.13404	-5.9416E-05	2.9079	0.001289	2.7738	0.0012296	443.28473963423255	32.331	0.47565	32.094	31.782	32.258	-0.23666					19	10	3	0	0	0	0.027866	1	2236	2236		45.952	19.156	1	95499	+		4121	29726	2406	2417	5551	5551					0.10868903608184155
ARLILSSIL	9	Unmodified	_ARLILSSIL_					0	0	0			REV__ENST00000419007.5_1_3:50311657-50311978:+|nuORF	REV__ENST00000419007.5_1_3:50311657-50311978:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2697448730469	2	493.32386	984.633166	-0.9529	-0.00047009	0.72422	0.00035728	-0.22868	-0.00011281	493.3240259304338	25.518	0.49776	25.292	25.105	25.602	-0.22683					21	11	3	0	0	0	0.024436	1	1237	1237		23.042	1.0826	1	279870	+		4122	32135	2407	2418	5552	5552					0.1402349675371397
ARLIPIIVL	9	Unmodified	_ARLIPIIVL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000463516.5_1_7:45003626-45005995:-|nuORF;ENST00000483585.5_1_7:45002340-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.35223388671875	2	504.35242	1006.69029	0.038701	1.9519E-05	-0.096649	-4.8745E-05	-0.057948	-2.9226E-05	504.35218642006663	82.233	1.2895	82.052	81.604	82.893	-0.18079					66	29	4	0	0	0	0.55828	1	9919	9919		55.504	9.5523	1	1045800			4123	5007	2408	2419	5553	5553					0.18720964030080722
ARLIPIIVL	9	Unmodified	_ARLIPIIVL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000463516.5_1_7:45003626-45005995:-|nuORF;ENST00000483585.5_1_7:45002340-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.35205078125	2	504.35242	1006.69029	-1.038	-0.0005235	1.04	0.00052451	0.002009	1.0132E-06	504.35276856662045	82.205	1.1654	82.065	81.743	82.908	-0.14014					64	26	4	0	0	0	0.22754	1	9880	9880		85.359	19.556	1	1101000			4124	5007	2408	2419	5554	5554					0.18720964030080722
ARLIPIIVL	9	Unmodified	_ARLIPIIVL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000463516.5_1_7:45003626-45005995:-|nuORF;ENST00000483585.5_1_7:45002340-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.35242	1006.69029	-0.38205	-0.00019269	0.46357	0.0002338	0.081528	4.1119E-05	504.35254979173004	82.342	0.97209	82.342	81.95	82.922	0	0.16776	0.00041263	NaN	85.359	35	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152000			4125	5007	2408	2419							0.18720964030080722
ARLIPIIVL	9	Unmodified	_ARLIPIIVL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000463516.5_1_7:45003626-45005995:-|nuORF;ENST00000483585.5_1_7:45002340-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.35242	1006.69029	1.1956	0.00060303	-0.95606	-0.00048219	0.23959	0.00012084	504.3518128454632	82.457	1.0766	82.347	81.605	82.682	-0.11006	0.1726	-0.0010194	NaN	85.359	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123560			4126	5007	2408	2419							0.18720964030080722
ARLIPIIVL	9	Unmodified	_ARLIPIIVL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000463516.5_1_7:45003626-45005995:-|nuORF;ENST00000483585.5_1_7:45002340-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.35242	1006.69029	0.52067	0.0002626	-0.53007	-0.00026734	-0.0094031	-4.7425E-06	504.3519582675521	82.285	1.2927	82.065	81.446	82.738	-0.22015	-0.10919	-0.00058967	NaN	85.359	59	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1677000			4127	5007	2408	2419							0.18720964030080722
ARLIVCVGGFV	11	Unmodified	_ARLIVCVGGFV_					0	0	0			REV__ENSG00000174010|ENST00000328046|KLHL15	REV__ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.329833984375	2	567.328619	1132.64269	-0.25342	-0.00014377	2.476	0.0014047	2.2226	0.0012609	567.3299706706163	102.52	0.73519	102.52	102.24	102.97	0.0073471					42	17	4	0	0	0	1.0119	1	13100	13100		34.173	1.3601	1	1033600	+		4128	26827	2409	2420	5555	5555					0.08166941767581193
ARLKVFNTC	9	Unmodified	_ARLKVFNTC_					0	0	0		nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2875366210938	2	526.289494	1050.56443	-0.28511	-0.00015005	-3.3241	-0.0017495	-3.6092	-0.0018995	526.2876301239967	68.424	0.52747	68.163	67.897	68.424	-0.26165					37	12	4	0	0	0	0.45795	2	7901	7901;7914		62.107	20.681	1	1855900			4129	18671	2410	2421	5556;5557	5556					0.04117509182356116
ARLKVFNTC	9	Unmodified	_ARLKVFNTC_					0	0	0		nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.287841796875	2	526.289494	1050.56443	0.26333	0.00013859	-3.8866	-0.0020455	-3.6233	-0.0019069	526.2872110730784	68.401	1.2547	68.158	67.909	69.164	-0.24277					65	30	4	0	0	0	0.48817	2	7902	7902;7913		60.118	14.146	1	1855100			4130	18671	2410	2421	5558;5559	5558					0.04117509182356116
ARLLKDQL	8	Unmodified	_ARLLKDQL_					0	0	0		nc|ENSG00000120217|Q9NZQ7-3|CD274;nc|ENSG00000120217|Q9NZQ7-4|CD274;ENSG00000120217|ENST00000381577|CD274	nc|ENSG00000120217|Q9NZQ7-3|CD274	nc|ENSG00000120217|Q9NZQ7-3|CD274	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7976989746094	2	478.798009	955.581465	1.1474	0.00054938	-0.65513	-0.00031368	0.49228	0.0002357	478.7974008863381	18.524	0.39628	18.368	18.148	18.544	-0.15637					17	7	4	0	0	0	0.77775	1	318	318		60.972	9.6365	1	165410			4131	3798	2411	2422	5560	5560					0.10189753059785289
ARLLRTAR	8	Unmodified	_ARLLRTAR_					0	0	0		ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26953125	2	478.809242	955.603932	-0.37591	-0.00017999	3.0388	0.001455	2.6629	0.001275	478.8105151497538	36.011	1.0511	36.011	35.492	36.543	0					72	28	4	0	0	0	0.027866	1	2741	2741		18.324	0	1	2342800			4132	4008	2412	2423	5561	5561					0.12435397248077606
ARLLRTAR	8	Unmodified	_ARLLRTAR_					0	0	0		ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.809242	955.603932	-0.84652	-0.00040532	3.5986	0.0017231	2.7521	0.0013177	478.81078859536876	35.859	0.98327	35.816	35.366	36.349	-0.042454	-0.12425	0.00031653	NaN	55.504	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2251300			4133	4008	2412	2423							0.12435397248077606
ARLLRTAR	8	Unmodified	_ARLLRTAR_					0	0	0		ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	ENSG00000124098|ENST00000371384|FAM210B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.809242	955.603932	-0.41815	-0.00020021	3.1354	0.0015013	2.7173	0.001301	478.8105519774931	35.952	0.98261	35.994	35.533	36.516	0.042336	0.053499	-0.00012707	NaN	55.504	71	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2099500			4134	4008	2412	2423							0.12435397248077606
ARLLTGRI	8	Unmodified	_ARLLTGRI_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7698974609375	2	450.292894	898.571235	0.49448	0.00022266	-0.41717	-0.00018785	0.077308	3.4811E-05	450.2925069937959	18.113	0.44181	17.982	17.762	18.203	-0.13147					17	8	3	0	0	0	0.027866	1	230	230		24.203	0	1	130740	+		4135	29012	2413	2424	5562	5562					0.11789190125227833
ARLLVLVTP	9	Unmodified	_ARLLVLVTP_					0	0	0			REV__ENST00000510007.5_1_17:48453495-48456929:+|nuORF	REV__ENST00000510007.5_1_17:48453495-48456929:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2879943847656	2	491.326402	980.638252	-0.2841	-0.00013958	1.0296	0.00050587	0.74549	0.00036628	491.32703830557926	76.131	0.34998	76.131	75.918	76.268	0					15	8	2	0	0	0	0.024405	1	9344	9344		35.618	0	1	108440	+		4136	24982	2414	2425	5563	5563					0.1471580061631812
ARLMLLLSL	9	Unmodified	_ARLMLLLSL_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2882080078125	2	515.328088	1028.64162	-0.11335	-5.8411E-05	-1.6277	-0.00083882	-1.7411	-0.00089724	515.3271389212183	40.249	0.18504	40.024	39.965	40.15	-0.225					6	4	2	0	0	0	0.024323	1	3472	3472		35.618	0	1	115030	+		4137	22596	2415	2426	5564	5564					0.12844727398692157
ARLNEKNP	8	Unmodified	_ARLNEKNP_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.310302734375	2	471.261791	940.509028	0.13028	6.1394E-05	-1.5839	-0.00074645	-1.4537	-0.00068506	471.2621307032618	48.416	0.71457	48.483	48.228	48.943	0.066795					36	19	3	0	0	0	0.027866	1	4852	4852		53.351	9.2347	1	255370			4138	9585	2416	2427	5565	5565					0.036394189862335224
ARLNKPGAS	9	Unmodified	_ARLNKPGAS_					0	0	0		ENST00000296468.7_1_4:128842791-128842851:-|nuORF	ENST00000296468.7_1_4:128842791-128842851:-|nuORF	ENST00000296468.7_1_4:128842791-128842851:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2642517089844	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.67687	1	10127	10127		47.657	8.4045	1	2903100			4139	11842	2417	2428	5566	5566					0.05435722848858404
ARLPESAAE	9	Unmodified	_ARLPESAAE_					0	0	0		ENSG00000152213|ENST00000282026|ARL11	ENSG00000152213|ENST00000282026|ARL11	ENSG00000152213|ENST00000282026|ARL11	MSMS	OPSCC_39_ClassI_Rep-3	3	472.58612060546875	2	472.245806	942.47706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.166	1	18.229	17.729	18.729	0.063307								0	0	0	0.6818	1	219	219		24.203	1.166	1				4140	6254	2418	2429	5567	5567					0.0035200651242348613
ARLQELCI	8	Unmodified	_ARLQELCI_					0	0	0			REV__ENSG00000169871|ENST00000306085|TRIM56;REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56	REV__ENSG00000169871|ENST00000306085|TRIM56	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7923583984375	2	473.262945	944.511337	-0.4863	-0.00023015	1.7261	0.00081688	1.2398	0.00058673	473.26388801391454	55.092	0.31575	55.19	55.016	55.332	0.098015					12	8	2	0	0	0	0.027866	1	6002	6002		37.159	0	1	96696	+		4141	26407;36916	2419	2430	5568	5568					0.03686131399683745
ARLQELKRQT	10	Unmodified	_ARLQELKRQT_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2133483886719	3	414.914083	1241.72042	-0.18348	-7.6128E-05	-2.7385	-0.0011363	-2.922	-0.0012124	415.24604870179473	29.194	0.18523	29.198	29.055	29.24	0.0031376					5	4	2	0	0	0	0.03519	1	1737	1737		26.75	15.653	1	42661	+		4142	22952	2420	2431	5569	5569					0.10922670957324954
ARLQKGGF	8	Unmodified	_ARLQKGGF_					0	0	0		nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1	nc|ENSG00000271271|P0DTE5-2|UGT2A2	nc|ENSG00000271271|P0DTE5-2|UGT2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.7565002441406	2	438.756144	875.497735	0.35176	0.00015434	-0.016322	-7.1613E-06	0.33544	0.00014717	438.7560123278091	40.963	1.0971	40.963	40.728	41.825	0					68	30	4	0	0	0	0.96719	1	3664	3664		42.474	1.9018	1	3675600			4143	11005	2421	2432	5570	5570					0.055006416827723115
ARLQLPAP	8	Unmodified	_ARLQLPAP_					0	0	0		ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.2664489746094	2	433.266345	864.518136	0.18188	7.8802E-05	-0.24074	-0.00010431	-0.058866	-2.5505E-05	433.2661052350957	46.151	1.2247	46.151	45.852	47.076	0					65	33	4	0	0	0	0.96719	1	4547	4547		42.474	3.6683	1	2193000			4144	3746	2422	2433	5571	5571					0.08045812342550107
ARLRMRNF	8	Unmodified	_ARLRMRNF_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.78125	2	532.300727	1062.5869	-0.52491	-0.00027941	2.2718	0.0012093	1.7469	0.00092987	532.3019694726135	56.943	0.69666	56.776	56.52	57.216	-0.1672					43	18	3	0	0	0	0.027866	1	6253	6253		33.516	0	1	3572600			4145	5169	2423	2434	5572	5572					0.058111533706323826
ARLSKIHLK	9	Unmodified	_ARLSKIHLK_					0	0	0		SOX6|p.E683K|1|0.27|ENSG00000110693|chr11:15986340-15986340|C/T|missense_variant	SOX6|p.E683K|1|0.27|ENSG00000110693|chr11:15986340-15986340|C/T|missense_variant	SOX6|p.E683K|1|0.27|ENSG00000110693|chr11:15986340-15986340|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2464599609375	2	533.3482	1064.68185	-0.59373	-0.00031666	0.37645	0.00020078	-0.21728	-0.00011589	533.3483706549891	34.382	0.57899	34.378	34.19	34.769	-0.0045624					27	14	3	0	0	0	0.02435	1	2559	2559		34.173	1.3601	1	145770			4146	37912	2424	2435	5573	5573					0.15209410113470767
ARLSKIHLK	9	Unmodified	_ARLSKIHLK_					0	0	0		SOX6|p.E683K|1|0.27|ENSG00000110693|chr11:15986340-15986340|C/T|missense_variant	SOX6|p.E683K|1|0.27|ENSG00000110693|chr11:15986340-15986340|C/T|missense_variant	SOX6|p.E683K|1|0.27|ENSG00000110693|chr11:15986340-15986340|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.3482	1064.68185	-0.64238	-0.00034261	-0.11794	-6.2901E-05	-0.76032	-0.00040551	533.3479844855725	34.429	0.3632	34.222	34.043	34.406	-0.20696	-0.13046	-0.00056453	NaN	34.173	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175500			4147	37912	2424	2435							0.15209410113470767
ARLTEVKSL	9	Unmodified	_ARLTEVKSL_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4;REV__ENSG00000232237|ENST00000449188|ASCL5	REV__ENSG00000232237|ENST00000449188|ASCL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.80859375	2	508.808574	1015.60259	-0.056962	-2.8983E-05	-0.24423	-0.00012427	-0.3012	-0.00015325	508.8083476553756	61.527	0.50066	61.313	61.001	61.501	-0.21375					37	11	4	0	0	0	0.26966	1	6869	6869		79.713	0	1	3973100	+		4148	27984;28902	2425	2436	5574	5574					0.09541718368666352
ARLTEVKSL	9	Unmodified	_ARLTEVKSL_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4;REV__ENSG00000232237|ENST00000449188|ASCL5	REV__ENSG00000232237|ENST00000449188|ASCL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.80889892578125	2	508.808574	1015.60259	-1.0057	-0.00051169	0.087808	4.4677E-05	-0.91786	-0.00046702	508.8088173438448	61.321	1.3972	61.145	60.833	62.23	-0.1761					66	34	4	0	0	0	0.26966	2	6863	6854;6863		79.713	0.8408	1	3414500	+		4149	27984;28902	2425	2436	5575;5576	5576					0.09541718368666352
ARLTEVKSL	9	Unmodified	_ARLTEVKSL_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4;REV__ENSG00000232237|ENST00000449188|ASCL5	REV__ENSG00000232237|ENST00000449188|ASCL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.8084411621094	2	508.808574	1015.60259	-0.50536	-0.00025713	0.21894	0.0001114	-0.28642	-0.00014573	508.8085515152474	61.537	0.6194	61.279	60.927	61.547	-0.25725					44	14	4	0	0	0	0.26966	2	6865	6865;6875		79.713	0.8408	1	4171100	+		4150	27984;28902	2425	2436	5577;5578	5577					0.09541718368666352
ARLVALLGE	9	Unmodified	_ARLVALLGE_					0	0	0			REV__ENST00000555737.5_1_15:91500194-91503934:+|nuORF	REV__ENST00000555737.5_1_15:91500194-91503934:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2633361816406	2	471.292559	940.570566	1.3562	0.00063916	-1.4923	-0.00070329	-0.13609	-6.4136E-05	471.29159967831424	62.856	0.87978	62.91	62.64	63.519	0.054104					38	22	2	0	0	0	0.024427	1	7223	7223		51.335	15.717	1	252230	+		4151	35014	2426	2437	5579	5579					0.09790350685523208
ARLVAPLAP	9	Unmodified	_ARLVAPLAP_					0	0	0		ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-6|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.2554931640625	2	454.28982	906.565087	-0.3728	-0.00016936	0.23902	0.00010858	-0.13378	-6.0776E-05	454.2897904351511	45.303	0.57736	45.154	44.938	45.515	-0.1488					21	16	2	0	0	0	0.024325	1	4432	4432		24.203	0	1	207860			4152	16402	2427	2438	5580	5580					0.1080667189369251
ARLVEMSLK	9	Unmodified	_ARLVEMSLK_					0	0	0			REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.839599609375	2	523.804977	1045.5954	-0.51269	-0.00026855	-3.2699	-0.0017128	-3.7826	-0.0019813	523.8033339801801	61.191	1.425	61.191	60.619	62.044	0					60	37	3	0	0	0	0.022083	1	7041	7041		99.375	3.1845	1	3214800	+		4153	28361	2428	2439	5581	5581					0.07442662496578123
ARLVKKQT	8	Unmodified	_ARLVKKQT_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7845458984375	2	472.306001	942.597449	-1.1542	-0.00054514	0.9095	0.00042956	-0.24472	-0.00011558	472.3064216292915	25.858	0.37638	25.695	25.457	25.834	-0.16331					11	8	2	0	0	0	0.027866	1	1237	1237		11.511	0	1	58424	+		4154	23682	2429	2440	5582	5582					0.12385459296706358
ARLVKKQT	8	Unmodified	_ARLVKKQT_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.306001	942.597449	-0.44	-0.00020781	0.18425	8.7025E-05	-0.25575	-0.00012079	472.3062073027781	26.03	0.24485	25.794	25.636	25.88	-0.23603	0.10058	-0.0003148	NaN	11.511	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36208	+		4155	23682	2429	2440							0.12385459296706358
ARLVKKQT	8	Unmodified	_ARLVKKQT_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.306001	942.597449	-0.089222	-4.214E-05	-0.1547	-7.3066E-05	-0.24392	-0.00011521	472.3058587582102	25.762	0.36831	25.591	25.33	25.698	-0.17078	-0.10217	-0.00063498	NaN	11.511	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58741	+		4156	23682	2429	2440							0.12385459296706358
ARLVPGCRA	9	Unmodified	_ARLVPGCRA_					0	0	0			REV__ENST00000405260.5_1_2:242082421-242089560:-|nuORF	REV__ENST00000405260.5_1_2:242082421-242089560:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.29473876953125	2	471.768729	941.522904	-0.076995	-3.6324E-05	-2.2936	-0.0010821	-2.3706	-0.0011184	471.7660981740431	40.9	0.18436	40.672	40.544	40.729	-0.2278					6	4	2	0	0	0	0.024	1	3565	3565		45.952	5.1738	1	59769	+		4157	31905	2430	2441	5583	5583					0.04980373213675193
ARLVRGRDRPN	11	Unmodified	_ARLVRGRDRPN_					0	0	0			REV__ENST00000340096.10_2_X:13753014-13753134:+|nuORF	REV__ENST00000340096.10_2_X:13753014-13753134:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2575378417969	3	437.256843	1308.7487	0.70758	0.0003094	0.44578	0.00019492	1.1534	0.00050432	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.0471	1	12158	12158		25.892	4.1113	1	1350500	+		4158	30610	2431	2442	5584	5584					0.10667413657279212
ARLWPKCYQSD	11	Unmodified	_ARLWPKCYQSD_					0	0	0			REV__nc|ENSG00000122126|Q01968-2|OCRL	REV__nc|ENSG00000122126|Q01968-2|OCRL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7589111328125	3	456.223928	1365.64996	-0.88242	-0.00040258	1.7148	0.00078234	0.83239	0.00037976	456.2246752543878	33.341	0.63537	33.175	32.958	33.593	-0.16565					19	15	2	0	0	0	0.024797	1	2353	2353		15.337	1.2515	1	105640	+		4159	22627	2432	2443	5585	5585					-0.018243704226506452
ARLWRALYG	9	Unmodified	_ARLWRALYG_					0	0	0		nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.217041015625	2	553.3169	1104.61925	-0.038045	-2.1051E-05	-2.3705	-0.0013117	-2.4086	-0.0013327	553.3157659869291	70.2	0.45227	69.949	69.691	70.143	-0.25063					25	10	3	0	0	0	0.024535	1	8160	8160		18.324	12.012	1	146720			4160	18242	2433	2444	5586	5586					0.07112264045258598
ARLYDLFDI	9	Unmodified	_ARLYDLFDI_					0	0	0			REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF	REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.2765502929688	2	563.300581	1124.58661	-0.59321	-0.00033416	0.79754	0.00044926	0.20433	0.0001151	563.3006148014133	82.272	0.49935	82.272	81.95	82.449	0					16	11	2	0	0	0	0.0242	1	10272	10272		79.713	2.9384	1	105720	+		4161	29433	2434	2445	5587	5587					0.029300121317419325
ARMADCVLDI	10	Carbamidomethyl (C)	_ARMADC(Carbamidomethyl (C))VLDI_	ARMADC(1)VLDI		ARMADC(67)VLDI		0	1	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.281494140625	2	582.281008	1162.54746	-0.75092	-0.00043724	0.8567	0.00049884	0.10579	6.1599E-05	582.2813106709999	49.641	1.0199	49.362	49.011	50.031	-0.27977					57	26	3	0	0	0	0.69662	1	4991	4991		67.494	7.3754	1	2489000	+		4162	20416	2435	2446	5588	5588	261				-0.0273077948579612
ARMADCVLDI	10	Carbamidomethyl (C)	_ARMADC(Carbamidomethyl (C))VLDI_					0	1	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	582.281008	1162.54746	-0.72255	-0.00042073	0.79786	0.00046458	0.075311	4.3852E-05	582.2812971900807	49.366	0.87455	49.366	49.039	49.913	0	0.016465	0.00029958	NaN	67.494	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211200	+		4163	20416	2435	2446			261				-0.0273077948579612
ARMADCVLDI	10	Carbamidomethyl (C)	_ARMADC(Carbamidomethyl (C))VLDI_					0	1	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	582.281008	1162.54746	-0.85521	-0.00049797	0.86555	0.00050399	0.010336	6.0185E-06	582.2811758164772	49.574	0.7765	49.423	49.113	49.889	-0.1512	0.073392	0.0003784	NaN	67.494	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2045300	+		4164	20416	2435	2446			261				-0.0273077948579612
ARMADCVLDI	10	Carbamidomethyl (C)	_ARMADC(Carbamidomethyl (C))VLDI_					0	1	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	582.281008	1162.54746	-1.2169	-0.00070857	1.7112	0.00099642	0.49436	0.00028785	582.2817957119062	49.275	0.89036	49.35	48.987	49.877	0.074196	-0.00011154	0.0013633	NaN	67.494	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2107600	+		4165	20416	2435	2446			261				-0.0273077948579612
ARMADCVLDI	10	Carbamidomethyl (C)	_ARMADC(Carbamidomethyl (C))VLDI_					0	1	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	582.281008	1162.54746	-0.75092	-0.00043724	0.8567	0.00049884	0.10579	6.1599E-05	582.2813106709999	49.641	1.0199	49.362	49.011	50.031	-0.27977	0.011829	0.0003681	NaN	67.494	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2489000	+		4166	20416	2435	2446			261				-0.0273077948579612
ARMKWQLL	8	Unmodified	_ARMKWQLL_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3032836914062	2	523.302404	1044.59026	0.82974	0.00043421	1.1329	0.00059286	1.9627	0.0010271	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.0239	1	10349	10349		33.516	3.1979	1	3893600			4167	5297	2436	2447	5589	5589					0.06974403424624143
ARMLDQDKL	9	Unmodified	_ARMLDQDKL_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3|KCNT1	REV__nc|ENSG00000107147|Q5JUK3|KCNT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.795166015625	2	545.289691	1088.56483	-0.75334	-0.00041079	-0.45555	-0.00024841	-1.2089	-0.0006592	545.2898050127376	55.389	0.75494	55.235	55.061	55.816	-0.15418					29	20	2	0	0	0	0.023842	1	6073	6073		77.318	8.5308	1	168890	+		4168	36550	2437	2448	5590	5590					0.024088841115371906
ARMNTLLAR	9	Unmodified	_ARMNTLLAR_					0	0	0			REV__ENST00000595269.5_1_10:67449289-67496676:+|nuORF	REV__ENST00000595269.5_1_10:67449289-67496676:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2576293945312	2	523.300393	1044.58623	-0.80188	-0.00041962	-4.3386	-0.0022704	-5.1405	-0.00269	523.2982893623463	22.89	0.37038	22.964	22.653	23.024	0.073954					12	7	2	0	0	0	0.024323	1	775	775		35.618	7.736	1	41339	+		4169	35783	2438	2449	5591	5591					0.0657231393092843
ARMSYSRS	8	Unmodified	_ARMSYSRS_					0	0	0			REV__ENST00000358752.3_1_11:94277417-94277780:+|nuORF	REV__ENST00000358752.3_1_11:94277417-94277780:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3059387207031	2	479.232176	956.449799	-0.57622	-0.00027614	0.30642	0.00014685	-0.2698	-0.00012929	479.23215532341504	23.839	0.51714	23.787	23.567	24.084	-0.051476					24	11	3	0	0	0	0.027866	1	939	939		27.882	7.8855	1	212060	+		4170	30865	2439	2450	5592	5592					-0.030168002995992538
ARNAAAVHL	9	Unmodified	_ARNAAAVHL_					0	0	0			REV__ENSG00000139645|ENST00000267116|ANKRD52	REV__ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.76446533203125	2	461.764501	921.514448	-0.023003	-1.0622E-05	0.20411	9.4249E-05	0.1811	8.3627E-05	461.7644572945982	21.637	1.2574	21.708	21.057	22.314	0.071487					50	25	3	0	0	0	0.80658	1	647	647		38.806	1.7777	1	681210	+		4171	23956	2440	2451	5593	5593					0.050551425686990115
ARNALLQSN	9	Unmodified	_ARNALLQSN_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7880859375	2	493.772522	985.530492	-0.42256	-0.00020865	0.13692	6.7607E-05	-0.28564	-0.00014104	493.77246321784844	20.942	0.57195	20.852	20.537	21.109	-0.090094					19	11	2	0	0	0	0.024381	1	568	568		37.159	6.6555	1	543490			4172	10131	2441	2452	5594	5594					0.03714804014964557
ARNCLVSVK	9	Unmodified	_ARNCLVSVK_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2979431152344	2	495.281669	988.548785	0.52499	0.00026002	1.8265	0.00090462	2.3515	0.0011646	495.28308151344584	54.969	0.32876	54.763	54.538	54.866	-0.20613					13	8	2	0	0	0	0.024477	1	5837	5837		35.618	0	1	165090			4173	1112;18045	2442	2453	5595	5595					0.0540522266529706
ARNEFFKI	8	Unmodified	_ARNEFFKI_					0	0	0			REV__ENST00000550987.5_1_12:69633426-69648902:+|nuORF	REV__ENST00000550987.5_1_12:69633426-69648902:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2536010742188	2	512.782359	1023.55016	-0.60906	-0.00031231	0.75564	0.00038748	0.14658	7.5165E-05	513.2857256410517	54.753	0.17522	54.753	54.656	54.831	0					7	4	2	0	0	0	0.027866	1	5993	5993		27.882	0	1	61513	+		4174	21927	2443	2454	5596	5596					0.03933180025705951
ARNITVKVQ	9	Unmodified	_ARNITVKVQ_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2881469726562	2	514.81419	1027.61383	-0.28769	-0.00014811	0.45735	0.00023545	0.16966	8.7344E-05	514.8141150995483	34.715	0.56858	34.508	34.284	34.852	-0.20696					31	13	3	0	0	0	0.023635	1	2544	2544		76.774	18.963	1	697900			4175	3559	2444	2455	5597	5597					0.1011254046279646
ARNITVKVQ	9	Unmodified	_ARNITVKVQ_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.81419	1027.61383	-0.71171	-0.0003664	-0.60027	-0.00030903	-1.312	-0.00067542	514.8138484366716	34.735	0.57651	34.735	34.479	35.056	0	0.15118	-0.00066723	NaN	76.774	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459680			4176	3559	2444	2455							0.1011254046279646
ARNLLKTNI	9	Unmodified	_ARNLLKTNI_					0	0	0		PMPCB|p.M408Ifs*6|1|0.15|ENSG00000105819|chr7:103311710-103311711|-/T|frameshift_variant	PMPCB|p.M408Ifs*6|1|0.15|ENSG00000105819|chr7:103311710-103311711|-/T|frameshift_variant	PMPCB|p.M408Ifs*6|1|0.15|ENSG00000105819|chr7:103311710-103311711|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2451782226562	2	521.822015	1041.62948	-0.78224	-0.00040819	0.99995	0.0005218	0.21771	0.00011361	521.8223839872738	50.622	0.73157	50.622	50.411	51.143	0					44	20	3	0	0	0	0.024263	1	5301	5301		51.335	0	1	2655300			4177	18977	2445	2456	5598	5598					0.11032826979840138
ARNLPVAT	8	Unmodified	_ARNLPVAT_					0	0	0		ENST00000468862.5_1_3:159706816-159710915:+|nuORF;ENST00000496308.1_1_3:159706816-159711351:+|nuORF;ENSG00000168811|ENST00000699704|IL12A	ENST00000468862.5_1_3:159706816-159710915:+|nuORF	ENST00000468862.5_1_3:159706816-159710915:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.73797607421875	2	421.248152	840.481751	-0.35848	-0.00015101	1.2439	0.00052401	0.88547	0.000373	421.2486505382321	26.582	0.50368	26.663	26.456	26.96	0.081293					16	11	2	0	0	0	0.027866	1	1346	1346		3.1592	1.9541	1	52752			4178	7867	2446	2457	5599	5599					0.055129354458472335
ARNLVQKAQ	9	Unmodified	_ARNLVQKAQ_					0	0	0		nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENSG00000160753|ENST00000368352|RUSC1;nc|ENSG00000160753|Q9BVN2-2|RUSC1;nc|ENSG00000160753|Q9BVN2-3|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2611083984375	2	514.30399	1026.59343	-1.4564	-0.00074905	0.97229	0.00050005	-0.48414	-0.000249	514.304448272508	30.056	0.58147	30.13	29.838	30.42	0.074316					33	13	3	0	0	0	0.024436	1	1823	1823		30.504	3.8107	1	295860			4179	6837	2447	2458	5600	5600					0.0811936980298924
ARNRVPFSN	9	Unmodified	_ARNRVPFSN_					0	0	0			REV__ABCA13|p.L2466V|1|0.09|ENSG00000179869|chr7:48278590-48278590|C/G|missense_variant	REV__ABCA13|p.L2466V|1|0.09|ENSG00000179869|chr7:48278590-48278590|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8191528320312	2	530.785964	1059.55738	0.60923	0.00032337	1.7576	0.00093289	2.3668	0.0012563	530.7870394271763	20.074	0.72742	19.874	19.554	20.282	-0.2001					20	14	2	0	0	0	0.024495	1	471	471		26.693	23.534	1	68166	+		4180	19045	2448	2459	5601	5601					0.029979126261423517
ARNSKELF	8	Unmodified	_ARNSKELF_					0	0	0		ENST00000267328.4_1_13:111175861-111175945:-|nuORF	ENST00000267328.4_1_13:111175861-111175945:-|nuORF	ENST00000267328.4_1_13:111175861-111175945:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7620849609375	2	482.764166	963.513779	-0.034442	-1.6627E-05	-3.8694	-0.001868	-3.9038	-0.0018846	482.762153267375	86.263	0.8212	86.218	85.861	86.683	-0.045097					46	18	3	0	0	0	0.845	1	10801	10801		55.504	3.205	1	826800			4181	11617	2449	2460	5602	5602					0.030563031290057552
ARNVTSRPN	9	Unmodified	_ARNVTSRPN_					0	0	0		ENST00000424893.5_1_3:38182013-38182643:+|nuORF;nc|ENSG00000172936|Q99836-4|MYD88;nc|ENSG00000172936|Q99836-3|MYD88	ENST00000424893.5_1_3:38182013-38182643:+|nuORF	ENST00000424893.5_1_3:38182013-38182643:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.792724609375	2	507.775597	1013.53664	0.26203	0.00013305	0.05228	2.6547E-05	0.31431	0.0001596	507.7770986988738	75.883	0.18616	75.895	75.752	75.938	0.011642					7	4	2	0	0	0	0.024354	1	9249	9249		38.806	3.1879	1	64895			4182	14052	2450	2461	5603	5603					0.03041322246474465
ARPALLLLL	9	Unmodified	_ARPALLLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.3185119628906	2	490.33677	978.658987	-1.2013	-0.00058903	-0.10074	-4.9397E-05	-1.302	-0.00063843	490.3369371436975	29.606	0.21323	29.361	29.185	29.399	-0.24524					7	4	2	0	0	0	0.024535	1	1828	1828		18.324	1.8513	1	34592			4183	9320	2451	2462	5604	5604					0.16880390996004735
ARPAPPASPPA	11	Unmodified	_ARPAPPASPPA_					0	0	0			REV__ENSG00000167476|ENST00000300961|JSRP1	REV__ENSG00000167476|ENST00000300961|JSRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7904052734375	2	516.285266	1030.55598	-0.44631	-0.00023042	-0.72504	-0.00037433	-1.1713	-0.00060475	516.285103404029	52.28	0.35334	52.28	52.16	52.513	0					16	8	2	0	0	0	0.024768	1	5617	5617		31.53	9.8275	1	577440	+		4184	26144	2452	2463	5605	5605					0.04192278537357197
ARPARLAEA	9	Unmodified	_ARPARLAEA_					0	0	0			REV__nc|ENSG00000128309|P25325|MPST	REV__nc|ENSG00000128309|P25325|MPST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.77764892578125	2	477.777608	953.540663	0.26524	0.00012673	-1.1472	-0.00054811	-0.88196	-0.00042138	477.77724843167783	27.381	2.813	27.381	26.447	29.26	0					206	70	5	0	0	0	0.28753	1	1464	1464		77.318	5.4401	1	85113000	+		4185	22979	2453	2464	5606	5606					0.06203411740159481
ARPATSTL	8	Unmodified	_ARPATSTL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	408.732421875	2	408.732335	815.450116	0.37518	0.00015335	0.19869	8.121E-05	0.57386	0.00023456	408.7322735260909	26.748	0.62843	26.829	26.543	27.171	0.081293					34	15	3	0	0	0	0.35998	1	1345	1345		102.77	8.7669	1	1196100			4186	3392	2454	2465	5607	5607					0.03500942691891851
ARPATSTL	8	Unmodified	_ARPATSTL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	408.732335	815.450116	0.70701	0.00028898	-0.16141	-6.5974E-05	0.5456	0.00022301	408.7321050432055	27.053	0.83307	27.053	26.783	27.616	0	0.090608	-0.00020602	NaN	102.77	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474700			4187	3392	2454	2465							0.03500942691891851
ARPATSTL	8	Unmodified	_ARPATSTL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	408.732335	815.450116	0.094868	3.8776E-05	0.19873	8.1228E-05	0.2936	0.00012	408.73235118582784	27.018	0.90959	27.005	26.662	27.572	-0.012983	0.042947	8.8387E-05	NaN	102.77	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1269400			4188	3392	2454	2465							0.03500942691891851
ARPCDWRALL	10	Unmodified	_ARPCDWRALL_					0	0	0			REV__ENST00000255882.10_2_22:21167757-21167790:-|nuORF	REV__ENST00000255882.10_2_22:21167757-21167790:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.203857421875	3	400.881725	1199.62335	-1.0518	-0.00042167	0.54074	0.00021677	-0.51111	-0.00020489	400.8821281071562	25.77	0.38554	25.599	25.364	25.75	-0.17151					18	8	3	0	0	0	0.03519	1	1194	1194		32.751	3.5805	1	78935	+		4189	29545	2455	2466	5608	5608					0.03151985476665686
ARPCEPLVP	9	Unmodified	_ARPCEPLVP_					0	0	0		ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27484130859375	2	491.262945	980.511337	-0.83311	-0.00040928	1.2118	0.00059532	0.3787	0.00018604	491.26346244328437	75.514	1.0765	75.514	75.232	76.308	0					66	28	3	0	0	0	0.023596	1	9313	9313		63.306	31.351	1	2263000			4190	16609	2456	2467	5609	5609					0.02030131399669699
ARPCEPLVP	9	Unmodified	_ARPCEPLVP_					0	0	0		ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.262945	980.511337	-0.92978	-0.00045677	2.9572	0.0014527	2.0274	0.00099598	491.26410062025917	75.991	0.69661	75.718	75.267	75.964	-0.27266	0.099137	0.0019093	NaN	63.306	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123850			4191	16609	2456	2467							0.02030131399669699
ARPCEPLVP	9	Unmodified	_ARPCEPLVP_					0	0	0		ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.262945	980.511337	-0.063333	-3.1113E-05	2.9333	0.001441	2.87	0.0014099	491.26392865089997	76.037	0.57928	75.778	75.319	75.898	-0.25866	0.15929	0.0018858	NaN	63.306	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135770			4192	16609	2456	2467							0.02030131399669699
ARPCEPLVP	9	Unmodified	_ARPCEPLVP_					0	0	0		ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	ENST00000551959.1_1_12:57009385-57023992:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.262945	980.511337	0.31349	0.00015401	1.6663	0.0008186	1.9798	0.00097261	491.26351628758493	75.843	0.6125	75.667	75.234	75.846	-0.17548	0.048331	0.00064098	NaN	63.306	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130310			4193	16609	2456	2467							0.02030131399669699
ARPDFDAAI	9	Unmodified	_ARPDFDAAI_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.25909423828125	2	488.248349	974.482145	-0.31067	-0.00015168	-2.8617	-0.0013972	-3.1724	-0.0015489	488.24666979732643	41.972	0.76371	41.84	41.285	42.049	-0.13219					25	21	2	0	0	0	0.024397	1	3713	3713		47.657	18.508	1	339480	+		4194	26116	2457	2468	5610	5610					-0.0061168962496367385
ARPDIVEVSSM	11	Unmodified	_ARPDIVEVSSM_					0	0	0		ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;ENST00000574215.5_1_3:27203940-27332977:-|nuORF;nc|ENSG00000163491|Q6ZWH5-7|NEK10;nc|ENSG00000163491|Q6ZWH5-6|NEK10;nc|ENSG00000163491|Q6ZWH5-5|NEK10	ENSG00000163491|ENST00000691995|NEK10	ENSG00000163491|ENST00000691995|NEK10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	602.30322265625	2	602.305538	1202.59652	-1.8494	-0.0011139	-2.4719	-0.0014889	-4.3214	-0.0026028	602.3041148385652	30.592	1.3575	30.666	30.254	31.612	0.074314					93	32	5	0	0	0	0.72615	1	1942	1942		80.455	22.225	1	6018700			4195	7087	2458	2469	5611	5611					0.003328320748096303
ARPDTSPLWL	10	Unmodified	_ARPDTSPLWL_					0	0	0		ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3114624023438	2	578.31148	1154.60841	0.22833	0.00013204	-2.0464	-0.0011834	-1.8181	-0.0010514	578.3101666613311	109.57	0.35733	109.42	109.29	109.65	-0.14889					32	17	2	0	0	0	1.118	1	13467	13467		30.318	4.7437	1	1649300			4196	4696	2459	2470	5612	5612					0.03728816880334307
ARPERGCMAF	10	Unmodified	_ARPERGCMAF_					0	0	0		ENST00000575801.5_2_17:703870-704173:-|nuORF	ENST00000575801.5_2_17:703870-704173:-|nuORF	ENST00000575801.5_2_17:703870-704173:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2671508789062	2	569.268235	1136.52192	0.49154	0.00027982	-1.3274	-0.00075562	-0.83582	-0.00047581	569.2673841540674	18.747	3.0543	18.543	17.667	20.722	-0.20371					134	61	4	0	0	0	1.0719	1	360	360		36.447	7.2767	1	307860			4197	17103	2460	2471	5613	5613					-0.04088209217525218
ARPERGCMAF	10	Unmodified	_ARPERGCMAF_					0	0	0		ENST00000575801.5_2_17:703870-704173:-|nuORF	ENST00000575801.5_2_17:703870-704173:-|nuORF	ENST00000575801.5_2_17:703870-704173:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2673950195312	2	569.268235	1136.52192	-0.21662	-0.00012331	-0.93033	-0.00052961	-1.1469	-0.00065292	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	0.98754	1	906	906		47.657	3.2801	1	3402100			4198	17103	2460	2471	5614	5614					-0.04088209217525218
ARPFPVLLD	9	Unmodified	_ARPFPVLLD_					0	0	0			REV__ENSG00000125998|ENST00000374408|FAM83C	REV__ENSG00000125998|ENST00000374408|FAM83C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3240966796875	2	514.300384	1026.58622	0.71031	0.00036531	-4.0567	-0.0020864	-3.3464	-0.0017211	514.2984073201701	97.75	1.4191	97.613	96.435	97.854	-0.1367					41	31	2	0	0	0	0.024457	1	11981	11981		29.15	1.2673	1	113420	+		4199	22871	2461	2472	5615	5615					0.07398637202550162
ARPFSDSLSI	10	Unmodified	_ARPFSDSLSI_					0	0	0		ATXN10-TUBGCP6|2|fusion;ATXN10-TUBGCP6|1|fusion;ENST00000498611.5_1_22:50657979-50682900:-|nuORF;nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000491449.5_1_22:50658476-50664613:-|nuORF	ATXN10-TUBGCP6|2|fusion	ATXN10-TUBGCP6|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2943115234375	2	546.787838	1091.56112	-0.51896	-0.00028376	0.16073	8.7885E-05	-0.35823	-0.00019587	547.289347918483	57.282	0.85109	57.057	56.544	57.395	-0.2248					70	22	4	0	0	0	0.03519	1	6281	6281		30.318	4.7437	1	2018900			4200	165	2462	2473	5616	5616					0.019005376093446102
ARPGLALLF	9	Unmodified	_ARPGLALLF_					0	0	0			REV__ENST00000470597.5_1_5:64558740-64769500:-|nuORF	REV__ENST00000470597.5_1_5:64558740-64769500:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2950134277344	2	479.297645	956.580737	1.0001	0.00047936	-0.5987	-0.00028695	0.40143	0.00019241	479.2971482998715	70.303	1.5577	70.01	69.551	71.109	-0.29291					69	42	3	0	0	0	0.72875	1	8439	8439		44.117	1.6423	1	5900200	+		4201	33158	2463	2474	5617	5617					0.10070958410756248
ARPGLALLF	9	Unmodified	_ARPGLALLF_					0	0	0			REV__ENST00000470597.5_1_5:64558740-64769500:-|nuORF	REV__ENST00000470597.5_1_5:64558740-64769500:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2979431152344	2	479.297645	956.580737	-0.20541	-9.8454E-05	0.54261	0.00026007	0.3372	0.00016162	479.29772652342143	70.058	1.3879	70.07	69.627	71.015	0.012413					72	35	3	0	0	0	0.72875	1	8392	8392		44.117	1.6423	1	4766400	+		4202	33158	2463	2474	5618	5618					0.10070958410756248
ARPGRHSQ	8	Unmodified	_ARPGRHSQ_					0	0	0			REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7449035644531	2	454.744099	907.473646	0.47062	0.00021401	1.0536	0.00047911	1.5242	0.00069313	454.74449165346823	101.24	1.4761	101.24	100.76	102.24	-0.0054474					99	33	4	0	0	0	1.0574	1	12968	12968		26.693	2.4902	1	3938500	+		4203	30220	2464	2475	5619	5619					0.016208012490778856
ARPIQLLF	8	Unmodified	_ARPIQLLF_					0	0	0			REV__nc|ENSG00000104755|Q99965-2|ADAM2	REV__nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.29620361328125	2	479.297645	956.580737	0.85285	0.00040877	-0.52953	-0.0002538	0.32331	0.00015496	479.29716956746876	69.973	1.4403	69.973	69.547	70.987	0					69	38	4	0	0	0	0.97924	1	8471	8471		40.573	1.5511	1	6097800	+		4204	21458	2465	2476	5620	5620					0.10070958410756248
ARPLLILIV	9	Unmodified	_ARPLLILIV_					0	0	0		ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.3522644042969	2	504.35242	1006.69029	-1.038	-0.0005235	1.04	0.00052451	0.002009	1.0132E-06	504.35276856662045	82.205	1.1654	82.065	81.743	82.908	-0.14014					64	26	4	0	0	0	0.70186	1	9891	9891		45.952	5.3793	1	1101000			4205	10319	2466	2477	5621	5621					0.1872096403009209
ARPLQLPLLLI	11	Unmodified	_ARPLQLPLLLI_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.4186401367188	2	623.915916	1245.81728	0.94269	0.00058816	0.48445	0.00030225	1.4271	0.00089041	623.916004519745	107.49	0.13774	107.49	107.39	107.53	0					10	4	3	0	0	0	1.0844	1	13807	13807		15.642	0	1	1347000	+		4206	26892	2467	2478	5622	5622					0.2042026518442981
ARPLQLPLLLI	11	Unmodified	_ARPLQLPLLLI_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	623.915916	1245.81728	0.94269	0.00058816	0.48445	0.00030225	1.4271	0.00089041	623.916004519745	107.49	0.13774	107.49	107.39	107.53	0	0.042469	-0.001437	NaN	15.642	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1347000	+		4207	26892	2467	2478							0.2042026518442981
ARPLQLPLLLI	11	Unmodified	_ARPLQLPLLLI_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	623.915916	1245.81728	0.44867	0.00027993	-0.65474	-0.0004085	-0.20607	-0.00012857	623.9155615335451	107.46	0.17195	107.46	107.39	107.56	-0.003479	0.0092122	-0.0028586	NaN	15.642	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2270500	+		4208	26892	2467	2478							0.2042026518442981
ARPLQLPLLLI	11	Unmodified	_ARPLQLPLLLI_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	623.915916	1245.81728	-0.49272	-0.00030742	1.5769	0.00098385	1.0842	0.00067643	623.9168324256186	107.5	0.11307	107.5	107.4	107.51	0.0034027	0.052323	-7.3854E-05	NaN	15.642	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1201500	+		4209	26892	2467	2478							0.2042026518442981
ARPLQLPLLLI	11	Unmodified	_ARPLQLPLLLI_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	623.915916	1245.81728	-2.2044	-0.0013754	1.9867	0.0012396	-0.21766	-0.0001358	623.917118372418	107.48	0.081902	107.34	107.31	107.39	-0.1346	-0.10471	0.00043756	NaN	15.642	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1812200	+		4210	26892	2467	2478							0.2042026518442981
ARPLQLPLLLI	11	Unmodified	_ARPLQLPLLLI_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	623.915916	1245.81728	0.59483	0.00037113	-0.49808	-0.00031076	0.096754	6.0367E-05	623.9155814537143	107.49	0.06031	107.33	107.28	107.34	-0.15772	-0.11294	-0.0026631	NaN	15.642	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1262800	+		4211	26892	2467	2478							0.2042026518442981
ARPMLPPQP	9	Unmodified	_ARPMLPPQP_					0	0	0		sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7789306640625	2	503.778762	1005.54297	-0.51145	-0.00025766	0.09036	4.5522E-05	-0.42108	-0.00021213	503.77865186540316	23.039	2.1803	22.978	21.334	23.514	-0.06086					89	47	3	0	0	0	0.4752	2	839	839;873		60.972	3.1607	1	789290			4212	37946	2468	2479	5623;5624	5623					0.040421241536364505
ARPMLPPQP	9	Unmodified	_ARPMLPPQP_					0	0	0		sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.77960205078125	2	503.778762	1005.54297	-0.671	-0.00033804	0.41536	0.00020925	-0.25564	-0.00012879	503.77873585412516	22.976	2.3026	23.05	21.256	23.559	0.073954					99	49	4	0	0	0	0.70186	1	776	776		45.952	1.8352	1	711070			4213	37946	2468	2479	5625	5625					0.040421241536364505
ARPPAPALSP	10	Unmodified	_ARPPAPALSP_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7829284667969	2	488.782359	975.550165	0.38975	0.0001905	-0.99287	-0.0004853	-0.60312	-0.0002948	488.78179146163836	40.475	1.8011	40.363	39.64	41.441	-0.11222					128	49	4	0	0	0	0.62431	1	3521	3521		74.255	10.949	1	9956000			4214	14991	2469	2480	5626	5626					0.061411800256905735
ARPPAPALSP	10	Unmodified	_ARPPAPALSP_					0	0	0		ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	ENST00000472558.6_1_12:6657995-6658223:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7821044921875	2	488.782359	975.550165	-0.8946	-0.00043727	0.12686	6.2009E-05	-0.76774	-0.00037526	488.7823563953132	40.535	1.7231	40.558	39.807	41.53	0.023006					129	48	5	0	0	0	0.52982	1	3503	3503		84.916	13.538	1	11637000			4215	14991	2469	2480	5627	5627					0.061411800256905735
ARPPIKLLL	9	Unmodified	_ARPPIKLLL_					0	0	0		ENSG00000140948|ENST00000671377|ZCCHC14;nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7894592285156	2	510.850045	1019.68554	0.58203	0.00029733	1.6448	0.00084027	2.2269	0.0011376	510.8506221678509	85.581	0.33195	85.431	85.243	85.575	-0.14967					10	7	2	0	0	0	0.024535	1	10383	10383		33.516	9.3128	1	35079			4216	5454	2470	2481	5628	5628					0.17648079887305812
ARPPPLLFPVS	11	Unmodified	_ARPPPLLFPVS_					0	0	0		ENST00000234198.8_1_2:172967252-172967456:-|nuORF	ENST00000234198.8_1_2:172967252-172967456:-|nuORF	ENST00000234198.8_1_2:172967252-172967456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.354248046875	2	597.355691	1192.69683	-0.1792	-0.00010705	-2.6078	-0.0015578	-2.787	-0.0016648	597.3535838614963	103.88	1.0548	103.75	103.23	104.29	-0.126					70	26	4	0	0	0	1.0292	1	12914	12914		30.318	3.6248	1	669990			4217	11250	2471	2482	5629	5629					0.10818857190793096
ARPPPLLFPVS	11	Unmodified	_ARPPPLLFPVS_					0	0	0		ENST00000234198.8_1_2:172967252-172967456:-|nuORF	ENST00000234198.8_1_2:172967252-172967456:-|nuORF	ENST00000234198.8_1_2:172967252-172967456:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	597.3576049804688	2	597.355691	1192.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.258	1	91.119	90.619	91.619	-0.13942								0	0	0	1.3457	1	11176	11176		23.523	1.5628	1				4218	11250	2471	2482	5630	5630					0.10818857190793096
ARPPPSSSP	9	Unmodified	_ARPPPSSSP_					0	0	0		ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.23541259765625	2	448.235242	894.45593	-0.014015	-6.2818E-06	-0.29544	-0.00013243	-0.30946	-0.00013871	448.23511053503233	26.649	2.2999	26.649	25.135	27.435	0					163	56	4	0	0	0	0.067814	2	1346	1346;1418		122.18	8.7644	1	7601100			4219	11364	2472	2483	5631;5632	5631					0.004480412035718473
ARPPPSSSP	9	Unmodified	_ARPPPSSSP_					0	0	0		ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2351989746094	2	448.235242	894.45593	-0.24633	-0.00011041	-0.054041	-2.4223E-05	-0.30037	-0.00013463	448.23521005210773	26.645	2.1698	26.622	25.172	27.342	-0.023088					147	53	5	0	0	0	0.1158	1	1382	1382		107.01	2.9507	1	8247300			4220	11364	2472	2483	5633	5633					0.004480412035718473
ARPPPSSSP	9	Unmodified	_ARPPPSSSP_					0	0	0		ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2351379394531	2	448.235242	894.45593	-0.14058	-6.3012E-05	-0.096153	-4.3099E-05	-0.23673	-0.00010611	448.2351985977982	26.303	2.1637	26.384	25.008	27.171	0.081293					144	52	4	0	0	0	0.067814	2	1300	1255;1300		122.18	15.303	1	7178700			4221	11364	2472	2483	5634;5635	5635					0.004480412035718473
ARPRLLLRRL	10	Unmodified	_ARPRLLLRRL_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MSMS	OPSCC_39_ClassI_Rep-1	1	632.4293823242188	2	632.427848	1262.84114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.46	1	107.46	106.96	107.96	0								0	0	0	0.76538	1	13805	13805		21.96	0	1		+		4222	28637	2473	2484	5636	5636					0.22023543461477857
ARPRPELTL	9	Unmodified	_ARPRPELTL_					0	0	0			REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2871704101562	2	526.81419	1051.61383	-0.65109	-0.00034301	-2.3966	-0.0012626	-3.0477	-0.0016056	526.811504797724	82.465	0.21701	82.325	82.13	82.347	-0.14014					6	4	2	0	0	0	0.024511	1	9906	9906		25.574	0	1	32927	+		4223	27212	2474	2485	5637	5637					0.09008540462787096
ARPRSGTTLV	10	Unmodified	_ARPRSGTTLV_					0	0	0			REV__ENST00000562391.5_1_18:77807330-77829802:+|nuORF	REV__ENST00000562391.5_1_18:77807330-77829802:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3092041015625	2	529.309272	1056.60399	-0.86654	-0.00045867	2.0871	0.0011047	1.2206	0.00064606	529.3103934921096	29.251	0.77779	29.254	29.014	29.792	0.0031357					45	19	4	0	0	0	1.0719	1	1780	1780		36.447	0.82846	1	2762800	+		4224	35195	2475	2486	5638	5638					0.07795352457424087
ARPRWPATP	9	Unmodified	_ARPRWPATP_					0	0	0			REV__STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant	REV__STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3043823242188	2	526.293425	1050.5723	-0.02676	-1.4084E-05	0.21454	0.00011291	0.18778	9.883E-05	526.7938039940666	69.633	0.2076	69.411	69.348	69.556	-0.22245					5	4	2	0	0	0	0.024381	1	8099	8099		29.15	0	1	29337	+		4225	37584	2476	2487	5639	5639					0.049034044941208776
ARPSEGRM	8	Unmodified	_ARPSEGRM_					0	0	0		ENST00000374759.7_1_17:79268944-79269082:-|nuORF	ENST00000374759.7_1_17:79268944-79269082:-|nuORF	ENST00000374759.7_1_17:79268944-79269082:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2287902832031	2	452.226894	902.439234	-0.094697	-4.2824E-05	2.6867	0.001215	2.592	0.0011722	452.22826882248506	102.79	1.6411	102.79	102.26	103.9	0					83	39	5	0	0	0	1.0106	1	13171	13171		35.618	3.6634	1	2985300			4226	13132	2477	2488	5640	5640					-0.015887829540247367
ARPSEGRM	8	Unmodified	_ARPSEGRM_					0	0	0		ENST00000374759.7_1_17:79268944-79269082:-|nuORF	ENST00000374759.7_1_17:79268944-79269082:-|nuORF	ENST00000374759.7_1_17:79268944-79269082:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.22821044921875	2	452.226894	902.439234	0.28257	0.00012779	2.6572	0.0012016	2.9397	0.0013294	452.2281336291809	103.03	1.39	102.86	102.46	103.85	-0.17034					74	33	5	0	0	0	0.93274	1	12775	12775		47.916	1.9636	1	4566600			4227	13132	2477	2488	5641	5641					-0.015887829540247367
ARPVHSLLAA	10	Unmodified	_ARPVHSLLAA_					0	0	0			REV__ENST00000453096.6_1_11:18343889-18344213:+|nuORF	REV__ENST00000453096.6_1_11:18343889-18344213:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.8095092773438	2	517.808908	1033.60326	-0.75101	-0.00038888	0.52509	0.0002719	-0.22591	-0.00011698	517.8089731727972	38.036	1.1461	37.817	37.344	38.491	-0.21849					56	27	4	0	0	0	0.941	1	3083	3083		51.335	7.2187	1	2264400	+		4228	32745	2478	2489	5642	5642					0.08780557808381673
ARPVPLRTTVQ	11	Unmodified	_ARPVPLRTTVQ_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.3706665039062	2	619.372404	1236.73025	0.077472	4.7984E-05	-2.4072	-0.001491	-2.3298	-0.001443	619.3708656217665	100.27	0.64758	100.1	99.921	100.57	-0.17088					49	19	3	0	0	0	1.0557	1	12444	12444		23.523	0	1	1194100	+		4229	26589	2479	2490	5643	5643					0.12135858962687962
ARQARPCL	8	Unmodified	_ARQARPCL_					0	0	0			REV__ENST00000335325.8_1_16:75142821-75143286:+|nuORF	REV__ENST00000335325.8_1_16:75142821-75143286:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2354431152344	2	457.753079	913.491604	0.2392	0.00010949	-2.7341	-0.0012515	-2.4949	-0.001142	457.74960959286176	22.44	0.23733	22.238	22.048	22.285	-0.20199					6	4	2	0	0	0	0.027866	1	755	755		18.324	0	1	6346.4	+		4230	30530	2480	2491	5644	5644					0.031398001795764685
ARQAYQRV	8	Unmodified	_ARQAYQRV_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.23876953125	2	496.275232	990.535912	-0.30106	-0.00014941	-2.1206	-0.0010524	-2.4217	-0.0012018	496.2737969420808	31.665	0.74327	31.424	31.034	31.778	-0.24109					36	18	3	0	0	0	0.027866	1	2088	2088		25.45	0	1	503790			4231	7670	2481	2492	5645	5645					0.04026527597409313
ARQEESEHS	9	Unmodified	_ARQEESEHS_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3056640625	2	536.736334	1071.45811	-1.1831	-0.00063499	-3.6487	-0.0019584	-4.8317	-0.0025934	536.7341159810749	48.253	0.33834	47.977	47.812	48.151	-0.27598					10	8	2	0	0	0	0.024457	1	4737	4737		29.15	0	1	99294			4232	3097	2482	2493	5646	5646					-0.07475574849286204
ARQEWGWPLE	10	Unmodified	_ARQEWGWPLE_					0	0	0		ENST00000375787.6_1_6:31696980-31697893:-|nuORF;ENST00000483792.1_1_6:31695419-31697893:-|nuORF;ENST00000480913.5_1_6:31695016-31697893:-|nuORF	ENST00000375787.6_1_6:31696980-31697893:-|nuORF	ENST00000375787.6_1_6:31696980-31697893:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.5461730957031	3	424.543767	1270.60947	1.1984	0.00050879	4.4217	0.0018772	5.6202	0.002386	424.5455650217684	18.036	0.49191	17.879	17.705	18.197	-0.15637					16	9	2	0	0	0	1.0909	1	258	258		33.922	5.8401	1	233260			4233	13170	2483	2494	5647	5647					-0.01500968750769971
ARQEWLDE	8	Unmodified	_ARQEWLDE_					0	0	0			REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2872924804688	2	523.748713	1045.48287	-0.60936	-0.00031915	0.20937	0.00010966	-0.4	-0.0002095	523.7487348452003	27.956	0.37144	27.711	27.55	27.921	-0.24524					11	8	2	0	0	0	0.027866	1	1586	1586		79.451	16.145	1	50253	+		4234	32242	2484	2495	5648	5648					-0.038048949759058814
ARQEWLDE	8	Unmodified	_ARQEWLDE_					0	0	0			REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.748713	1045.48287	-1.2624	-0.0006612	1.7615	0.00092257	0.49904	0.00026137	523.7492527866896	27.839	0.34646	27.839	27.653	27.999	0	0.12115	0.00088989	NaN	79.451	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118630	+		4235	32242	2484	2495							-0.038048949759058814
ARQEWLDE	8	Unmodified	_ARQEWLDE_					0	0	0			REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.748713	1045.48287	-0.64906	-0.00033994	0.83996	0.00043993	0.1909	9.9985E-05	523.748823254866	27.793	0.34937	27.789	27.616	27.966	-0.0042019	0.070862	-7.5403E-05	NaN	79.451	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143280	+		4236	32242	2484	2495							-0.038048949759058814
ARQEWLDE	8	Unmodified	_ARQEWLDE_					0	0	0			REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	REV__ENST00000425013.6_1_7:5660451-5660559:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.748713	1045.48287	-0.82523	-0.00043221	1.1181	0.00058559	0.29284	0.00015338	523.7488521004207	27.451	0.40235	27.532	27.319	27.722	0.081291	-0.18535	0.00021592	NaN	79.451	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111050	+		4237	32242	2484	2495							-0.038048949759058814
ARQGLAELRE	10	Unmodified	_ARQGLAELRE_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.8170776367188	2	571.817461	1141.62037	-0.19739	-0.00011287	0.016165	9.2437E-06	-0.18122	-0.00010363	571.8173720526314	19.488	0.61246	19.488	19.268	19.88	0					33	12	4	0	0	0	0.47897	1	415	415		90.601	16.346	1	374800			4238	1916	2485	2496	5649	5649					0.05522433623514189
ARQHFPGT	8	Unmodified	_ARQHFPGT_					0	0	0		ENSG00000070748|ENST00000337653|CHAT;nc|ENSG00000070748|P28329-3|CHAT;nc|ENSG00000070748|P28329-2|CHAT	ENSG00000070748|ENST00000337653|CHAT	ENSG00000070748|ENST00000337653|CHAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.75396728515625	2	457.235576	912.456599	0.37395	0.00017098	3.0541	0.0013964	3.428	0.0015674	457.2354948505342	32.675	0.4183	32.482	32.118	32.536	-0.19261					10	9	2	0	0	0	0.027866	1	2269	2269		30.504	0	1	46793			4239	1433	2486	2497	5650	5650					-0.003131193567128321
ARQIKGLVQ	9	Unmodified	_ARQIKGLVQ_					0	0	0			REV__EDF1|p.E125Q|1|0.12|ENSG00000107223|chr9:136862918-136862918|C/G|missense_variant	REV__EDF1|p.E125Q|1|0.12|ENSG00000107223|chr9:136862918-136862918|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2716979980469	2	506.816733	1011.61891	-0.82153	-0.00041636	0.21174	0.00010731	-0.60979	-0.00030905	506.81677979769233	31.489	0.37253	31.489	31.257	31.63	0					14	8	2	0	0	0	0.024381	1	2084	2084		55.504	3.205	1	74790	+		4240	19730	2487	2498	5651	5651					0.1135684432541666
ARQIKGLVQ	9	Unmodified	_ARQIKGLVQ_					0	0	0			REV__EDF1|p.E125Q|1|0.12|ENSG00000107223|chr9:136862918-136862918|C/G|missense_variant	REV__EDF1|p.E125Q|1|0.12|ENSG00000107223|chr9:136862918-136862918|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.816733	1011.61891	-0.24777	-0.00012557	-0.37869	-0.00019192	-0.62645	-0.0003175	506.8165140680601	31.104	0.33022	31.173	30.997	31.327	0.068962	-0.17985	-0.00013946	NaN	55.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57786	+		4241	19730	2487	2498							0.1135684432541666
ARQLAKIHAIH	11	Unmodified	_ARQLAKIHAIH_					0	0	0		ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.8827819824219	3	419.922801	1256.74657	1.2594	0.00052887	-1.8956	-0.00079599	-0.63612	-0.00026712	419.9219809829182	17.537	0.4982	17.383	17.209	17.708	-0.15403					12	9	2	0	0	0	0.024845	1	222	222		20.03	5.9445	1	69575			4242	5305	2488	2499	5652	5652					0.12846984919451643
ARQLAKIHAIH	11	Unmodified	_ARQLAKIHAIH_					0	0	0		ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	ENSG00000139163|ENST00000266517|ETNK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	419.922801	1256.74657	-0.11905	-4.9993E-05	-0.7083	-0.00029743	-0.82735	-0.00034743	419.9224663305896	17.565	0.24867	17.358	17.216	17.464	-0.20669	-0.012139	0.00073531	NaN	10.104	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68187			4243	5305	2488	2499							0.12846984919451643
ARQLIGLYT	9	Unmodified	_ARQLIGLYT_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH;ENST00000567926.5_1_15:66806337-66811430:+|nuORF	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7793579101562	2	517.803291	1033.59203	-0.27929	-0.00014462	0.54565	0.00028254	0.26635	0.00013792	517.8036075481273	51.846	0.40956	51.846	51.568	51.977	0					20	11	2	0	0	0	0.024381	1	5481	5481		37.159	6.8414	1	229960			4244	8467	2489	2500	5653	5653					0.07657735714224145
ARQLSLLVD	9	Unmodified	_ARQLSLLVD_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.31231689453125	2	507.800749	1013.58694	-0.72926	-0.00037032	-1.6831	-0.00085466	-2.4123	-0.001225	508.3008461613871	63.059	0.82561	63.059	62.769	63.595	0					40	21	2	0	0	0	0.024427	1	7394	7394		42.396	13.247	1	2379300	+		4245	21127	2490	2501	5654	5654					0.08069431851617992
ARQMKEQLR	9	Oxidation (M)	_ARQM(Oxidation (M))KEQLR_		ARQM(1)KEQLR		ARQM(62)KEQLR	0	0	1		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.3194580078125	2	588.319314	1174.62407	-0.86063	-0.00050632	1.0366	0.00060986	0.17598	0.00010353	588.3197816871028	21.678	0.67597	21.487	21.177	21.853	-0.19072					39	13	4	0	0	0	0.45795	1	684	684		62.107	9.1707	1	308560			4246	4805	2491	2502	5655	5655		195			0.04374780125726829
ARQNGPLQA	9	Unmodified	_ARQNGPLQA_					0	0	0			REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.7593078613281	2	477.759415	953.504277	-0.79014	-0.0003775	0.48951	0.00023387	-0.30063	-0.00014363	477.7595827863292	38.391	0.71974	38.17	37.898	38.617	-0.22149					46	19	3	0	0	0	0.55828	1	3168	3168		55.504	0.72789	1	3489500	+		4247	24339	2492	2503	5656	5656					0.02566534843458612
ARQNGPLQA	9	Unmodified	_ARQNGPLQA_					0	0	0			REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.7596130371094	2	477.759415	953.504277	-0.31069	-0.00014844	-0.097741	-4.6697E-05	-0.40843	-0.00019513	477.7593033193202	38.44	0.681	38.222	37.926	38.607	-0.21849					54	18	4	0	0	0	0.35646	1	3150	3150		68.787	2.3575	1	4367800	+		4248	24339	2492	2503	5657	5657					0.02566534843458612
ARQNRPRS	8	Unmodified	_ARQNRPRS_					0	0	0			REV__ENST00000515734.2_1_5:59784168-59784246:+|nuORF	REV__ENST00000515734.2_1_5:59784168-59784246:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.81329345703125	2	492.775931	983.537309	-0.8118	-0.00040003	1.9356	0.00095382	1.1238	0.00055379	492.7771184578654	30.281	1.0108	30.037	29.655	30.666	-0.24415					46	23	3	0	0	0	0.027866	1	1892	1892		97.473	0	1	277100	+		4249	34208	2493	2504	5658	5658					0.04488161686174408
ARQPAKKAR	9	Unmodified	_ARQPAKKAR_					0	0	0			REV__nc|ENSG00000164430|Q8N884-2|CGAS	REV__nc|ENSG00000164430|Q8N884-2|CGAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7675170898438	2	513.319974	1024.6254	-0.36193	-0.00018579	2.4207	0.0012426	2.0587	0.0010568	513.3212271956218	79.136	0.57423	79.155	78.86	79.434	0.018677					27	13	3	0	0	0	0.024381	1	9761	9761		45.952	5.3793	1	264080	+		4250	25754	2494	2505	5659	5659					0.11406782276776539
ARQPSPFVD	9	Unmodified	_ARQPSPFVD_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7685241699219	2	508.761623	1015.50869	-0.7787	-0.00039617	3.4903	0.0017757	2.7116	0.0013795	508.7631763364443	60.543	0.70379	60.543	59.988	60.692	0					25	18	2	0	0	0	0.02435	1	6991	6991		42.396	11.892	1	92776			4251	10285	2495	2506	5660	5660					0.0015599926638287798
ARQQGHVGQV	10	Unmodified	_ARQQGHVGQV_					0	0	0			REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8067626953125	2	540.288871	1078.56319	-0.25177	-0.00013603	-1.2957	-0.00070007	-1.5475	-0.00083609	540.2871176649243	52.498	0.70186	52.351	52.095	52.797	-0.14723					31	17	3	0	0	0	0.03519	1	5637	5637		32.812	21.301	1	445080	+		4252	37187	2496	2507	5661	5661					0.02705011137800284
ARQQGHVGQV	10	Unmodified	_ARQQGHVGQV_					0	0	0			REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.288871	1078.56319	-0.71157	-0.00038445	3.0366	0.0016407	2.3251	0.0012562	540.290312393074	52.372	0.50542	52.372	52.049	52.554	0	-0.0069028	0.00021418	NaN	39.253	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507350	+		4253	37187	2496	2507							0.02705011137800284
ARQQGHVGQV	10	Unmodified	_ARQQGHVGQV_					0	0	0			REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.288871	1078.56319	-0.92314	-0.00049876	3.3362	0.0018025	2.4131	0.0013038	540.2901384870904	52.321	0.48518	52.413	52.04	52.526	0.091942	0.03471	0.00053792	NaN	39.253	25	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501210	+		4254	37187	2496	2507							0.02705011137800284
ARQQRAQT	8	Unmodified	_ARQQRAQT_					0	0	0		nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	nc|ENSG00000116514|Q6ZMZ0-2|RNF19B	nc|ENSG00000116514|Q6ZMZ0-2|RNF19B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7925720214844	2	479.762489	957.510425	0.24232	0.00011625	3.3795	0.0016213	3.6218	0.0017376	479.7637548132336	51.015	0.15105	50.739	50.627	50.778	-0.27643					5	3	2	0	0	0	0.027866	1	5197	5197		11.511	1.2458	1	67656			4255	3551	2497	2508	5662	5662					0.02997053075000622
ARQRVWRA	8	Unmodified	_ARQRVWRA_					0	0	0		ENSG00000184408|ENST00000331113|KCND2;KCND2|p.E176D|1|0.3|ENSG00000184408|chr7:120275160-120275160|G/C|missense_variant	ENSG00000184408|ENST00000331113|KCND2	ENSG00000184408|ENST00000331113|KCND2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.748046875	2	521.804491	1041.59443	0.073694	3.8454E-05	-1.7303	-0.0009029	-1.6567	-0.00086445	521.803440858561	37.088	0.45428	36.895	36.697	37.152	-0.193					17	11	2	0	0	0	0.027866	1	2947	2947		37.159	10.466	1	277610			4256	9335	2498	2509	5663	5663					0.07529628962561219
ARQSLFCSL	9	Unmodified	_ARQSLFCSL_					0	0	0		CNST|p.P166Rfs*32|1|0.42|ENSG00000162852|chr1:246621541-246621542|-/GC|frameshift_variant	CNST|p.P166Rfs*32|1|0.42|ENSG00000162852|chr1:246621541-246621542|-/GC|frameshift_variant	CNST|p.P166Rfs*32|1|0.42|ENSG00000162852|chr1:246621541-246621542|-/GC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.7796630859375	2	512.765852	1023.51715	-0.65802	-0.00033741	2.3755	0.0012181	1.7175	0.00088068	512.7687011254797	31.752	0.19996	31.752	31.669	31.869	0					5	4	2	0	0	0	0.024354	1	2150	2150		30.504	3.7075	1	17577			4257	461	2499	2510	5664	5664					0.006332299113523732
ARQTNWTF	8	Unmodified	_ARQTNWTF_					0	0	0			REV__UTP14A|p.S705F|1|0.36|ENSG00000156697|chrX:129929406-129929406|C/T|missense_variant	REV__UTP14A|p.S705F|1|0.36|ENSG00000156697|chrX:129929406-129929406|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2636413574219	2	512.253966	1022.49338	0.041129	2.1068E-05	-0.83879	-0.00042967	-0.79766	-0.0004086	512.2537346593513	80.79	0.47925	80.552	80.409	80.889	-0.23784					17	11	2	0	0	0	0.027866	1	9725	9725		19.36	6.4008	1	157630	+		4258	37774	2500	2511	5665	5665					-0.016968675308021375
ARQTSPAA	8	Unmodified	_ARQTSPAA_					0	0	0			REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.584228515625	2	401.214309	800.414065	0.14241	5.7136E-05	1.0228	0.00041037	1.1652	0.00046751	401.2144776743775	25.406	0.93987	25.179	24.494	25.434	-0.22683					38	21	3	0	0	0	0.027866	1	1219	1219		21.96	14.767	1	595430	+		4259	19195	2501	2512	5666	5666					0.0058748551502958435
ARQTSPAA	8	Unmodified	_ARQTSPAA_					0	0	0			REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	401.214309	800.414065	0.61662	0.0002474	0.13494	5.4141E-05	0.75157	0.00030154	401.214217371224	25.083	0.99969	25.083	24.653	25.652	0	-0.015164	-0.00039208	NaN	21.96	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439140	+		4260	19195	2501	2512							0.0058748551502958435
ARQTSPAA	8	Unmodified	_ARQTSPAA_					0	0	0			REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	401.214309	800.414065	-0.43644	-0.00017511	1.1072	0.00044423	0.67078	0.00026913	401.21463313767885	25.141	0.70559	25.107	24.727	25.432	-0.034395	0.0086825	0.0003881	NaN	21.96	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427560	+		4261	19195	2501	2512							0.0058748551502958435
ARQVAPLL	8	Unmodified	_ARQVAPLL_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.2737121582031	2	434.27417	866.533787	0.049146	2.1343E-05	-0.263	-0.00011421	-0.21385	-9.2869E-05	434.274048688637	54.85	1.3662	54.619	54.181	55.547	-0.23087					78	38	4	0	0	0	0.75307	2	5836	5836;5872		62.978	0	1	9281500	+		4262	28019	2502	2513	5667;5668	5667					0.09518098859598467
ARQYSQKI	8	Unmodified	_ARQYSQKI_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2735595703125	2	497.277441	992.540328	0.52402	0.00026058	-1.2932	-0.00064306	-0.76914	-0.00038247	497.27669067406543	39.98	0.71784	39.98	39.696	40.414	0					52	19	4	0	0	0	0.59392	1	3497	3497		76.847	0	1	2736400			4263	3803	2503	2514	5669	5669					0.04375992020322883
ARRAGPLV	8	Unmodified	_ARRAGPLV_					0	0	0			REV__ENST00000538185.1_1_11:61256765-61256957:+|nuORF	REV__ENST00000538185.1_1_11:61256765-61256957:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.7507629394531	2	420.264136	838.51372	0.015218	6.3955E-06	0.39698	0.00016684	0.4122	0.00017323	420.2641638906677	42.362	0.50436	42.132	41.865	42.37	-0.23029					34	13	3	0	0	0	0.027866	1	3763	3763		13.775	0	1	1225500	+		4264	34712	2504	2515	5670	5670					0.0880034791965727
ARRAIAPN	8	Unmodified	_ARRAIAPN_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.759521484375	2	434.759218	867.503883	-0.63678	-0.00027685	0.75038	0.00032623	0.1136	4.9388E-05	434.75949361101846	89.594	1.3662	89.432	88.807	90.173	-0.1626					55	32	3	0	0	0	1.0574	1	10949	10949		25.45	4.9683	1	339730			4265	11068	2505	2516	5671	5671					0.0648315991426216
ARRAIAPN	8	Unmodified	_ARRAIAPN_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.759218	867.503883	0.17444	7.5838E-05	-0.20919	-9.0946E-05	-0.034749	-1.5107E-05	434.75922360188525	89.365	1.4498	89.365	89.02	90.469	0	-0.061413	-0.00021945	NaN	25.45	51	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220330			4266	11068	2505	2516							0.0648315991426216
ARRAIAPN	8	Unmodified	_ARRAIAPN_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	434.759218	867.503883	-0.23785	-0.00010341	0.049832	2.1665E-05	-0.18802	-8.1742E-05	434.75928874462977	89.589	1.1355	89.461	88.871	90.007	-0.12775	0.034421	5.7687E-06	NaN	25.45	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241780			4267	11068	2505	2516							0.0648315991426216
ARRAIAPN	8	Unmodified	_ARRAIAPN_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	434.759218	867.503883	0.6064	0.00026364	-0.90935	-0.00039535	-0.30295	-0.00013171	434.75882899412875	89.587	1.8848	89.449	88.524	90.408	-0.13761	0.022096	-0.00082826	NaN	25.45	61	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187260			4268	11068	2505	2516							0.0648315991426216
ARRAPSPTV	9	Unmodified	_ARRAPSPTV_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;ENST00000540658.1_1_12:130881908-130892327:-|nuORF	ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.777587890625	2	477.777608	953.540663	-0.080074	-3.8258E-05	-0.84906	-0.00040566	-0.92914	-0.00044392	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.67687	1	1442	1442		47.657	1.6851	1	79837000			4269	1238	2506	2517	5672	5672					0.062034117401822186
ARRAPSPTV	9	Unmodified	_ARRAPSPTV_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;ENST00000540658.1_1_12:130881908-130892327:-|nuORF	ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7777404785156	2	477.777608	953.540663	-0.86432	-0.00041295	-0.014007	-6.692E-06	-0.87832	-0.00041964	477.77780002341314	27.145	2.5781	27.226	26.29	28.868	0.081293					199	64	5	0	0	0	0.50848	2	1390	1379;1390		58.782	4.0056	1	98548000			4270	1238	2506	2517	5673;5674	5674					0.062034117401822186
ARRCLPHS	8	Unmodified	_ARRCLPHS_					0	0	0		ENST00000462953.1_1_2:242436889-242437667:-|nuORF	ENST00000462953.1_1_2:242436889-242437667:-|nuORF	ENST00000462953.1_1_2:242436889-242437667:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.5496826171875	2	470.250703	938.486853	-1.2819	-0.00060279	-3.5119	-0.0016515	-4.7938	-0.0022543	470.24894281723056	41.081	0.49109	40.851	40.589	41.08	-0.2303					26	12	3	0	0	0	0.027866	1	3559	3559		12.959	0	1	483270			4271	14722	2507	2518	5675	5675					0.015149160368082448
ARRCTLSLGG	10	Unmodified	_ARRCTLSLGG_					0	0	0		ENST00000609314.5_1_X:148619180-148620284:-|nuORF;ENST00000449111.5_1_X:149108908-149110531:+|nuORF	ENST00000609314.5_1_X:148619180-148620284:-|nuORF	ENST00000609314.5_1_X:148619180-148620284:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2507934570312	2	517.2822	1032.54985	-0.10066	-5.2069E-05	-1.7076	-0.00088329	-1.8082	-0.00093536	517.2818260143486	46.342	0.75544	46.245	45.999	46.754	-0.096649					34	20	3	0	0	0	0.03519	1	4531	4531		26.693	0	1	499860			4272	17603	2508	2519	5676	5676					0.034874370342322436
ARRDGMYMQ	9	Unmodified	_ARRDGMYMQ_					0	0	0			REV__ENSG00000147799|ENST00000377307|ARHGAP39	REV__ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.2864379882812	2	564.257868	1126.50118	-0.4144	-0.00023383	3.9178	0.0022106	3.5034	0.0019768	564.2586667545224	67.466	0.59976	67.49	67.112	67.712	0.023903					33	14	3	0	0	0	0.024397	1	7933	7933		39.253	0	1	196620	+		4273	24582	2509	2520	5677	5677					-0.05700799597207151
ARREEQSP	8	Unmodified	_ARREEQSP_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.781005859375	2	486.746505	971.478456	0.20259	9.8612E-05	0.095902	4.668E-05	0.2985	0.00014529	486.7447153576003	81.437	2.0308	81.208	80.656	82.687	-0.2289					59	47	2	0	0	0	0.027866	1	9727	9727		45.952	8.7928	1	352110	+		4274	22664	2510	2521	5678	5678					-0.008423593988140965
ARRGGAPRDL	10	Unmodified	_ARRGGAPRDL_					0	0	0			REV__ENST00000572221.5_1_16:67907101-67909932:+|nuORF	REV__ENST00000572221.5_1_16:67907101-67909932:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.8057250976562	2	534.804688	1067.59482	-1.2211	-0.00065303	3.5666	0.0019074	2.3455	0.0012544	534.8065637949222	80.353	0.94217	80.375	80.063	81.005	0.021446					48	22	3	0	0	0	1.0002	1	9926	9926		45.972	1.5951	1	1797000	+		4275	35422	2511	2522	5679	5679					0.06373003891735607
ARRGGVKRI	9	Unmodified	_ARRGGVKRI_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8279724121094	2	506.827966	1011.64138	3.2756	0.0016602	-3.35	-0.0016979	-0.074362	-3.7689E-05	506.8261661714843	17.324	0.39641	17.324	17.102	17.498	0					19	7	4	0	0	0	0.83071	1	150	150		37.159	3.6435	1	418240			4276	6665	2512	2523	5680	5680					0.13602488513697608
ARRGGVKRI	9	Unmodified	_ARRGGVKRI_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.827880859375	2	506.827966	1011.64138	1.2907	0.00065414	-1.2869	-0.00065223	0.0037671	1.9093E-06	506.827165092172	17.487	0.59938	17.333	17.108	17.708	-0.15403					19	11	2	0	0	0	0.55828	1	185	185		55.504	7.5886	1	469540			4277	6665	2512	2523	5681	5681					0.13602488513697608
ARRGPLRAT	9	Unmodified	_ARRGPLRAT_					0	0	0		ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8214416503906	2	499.304324	996.594095	-0.07033	-3.5116E-05	0.10546	5.2656E-05	0.035129	1.754E-05	499.3041901648819	19.115	0.59288	18.996	18.804	19.397	-0.11872					22	11	3	0	0	0	0.024541	1	405	405		10.265	0	1	56944			4278	8920	2513	2524	5682	5682					0.09566209242689183
ARRHKRET	8	Unmodified	_ARRHKRET_					0	0	0		ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12;nc|ENSG00000148848|O43184-3|ADAM12;nc|ENSG00000148848|O43184-4|ADAM12;nc|ENSG00000148848|O43184-2|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.8206176757812	2	527.304855	1052.59516	0.8738	0.00046076	-0.57548	-0.00030345	0.29832	0.00015731	527.304563058713	97.996	1.4903	97.994	97.367	98.857	-0.0020752					65	34	3	0	0	0	0.027866	1	12555	12555		12.207	0	1	667590			4279	6056	2514	2525	5683	5683					0.07096423611619684
ARRIRLTV	8	Unmodified	_ARRIRLTV_					0	0	0			REV__nc|ENSG00000147889|Q8N726|CDKN2A	REV__nc|ENSG00000147889|Q8N726|CDKN2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.28729248046875	2	492.824892	983.635232	-0.027099	-1.3355E-05	2.8645	0.0014117	2.8374	0.0013983	492.8261492875855	67.737	0.59801	67.449	67.187	67.785	-0.28834					29	14	3	0	0	0	0.027866	1	8096	8096		30.504	1.3541	1	268680	+		4280	36767	2515	2526	5684	5684					0.14275970282164963
ARRKCQADP	9	Unmodified	_ARRKCQADP_					0	0	0		nc|ENSG00000146013|O60609-2|GFRA3;ENSG00000146013|ENST00000274721|GFRA3	nc|ENSG00000146013|O60609-2|GFRA3	nc|ENSG00000146013|O60609-2|GFRA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.802490234375	2	522.772	1043.52945	0.23374	0.00012219	-0.40376	-0.00021108	-0.17002	-8.8881E-05	522.7714173350973	97.74	0.78547	97.75	97.194	97.979	0.010231					26	17	2	0	0	0	0.024447	1	12378	12378		32.812	3.6424	1	127990			4281	5850	2516	2527	5685	5685					0.009422663743862358
ARRKKRIS	8	Unmodified	_ARRKKRIS_					0	0	0			REV__ENSG00000103994|ENST00000564754|ZNF106	REV__ENSG00000103994|ENST00000564754|ZNF106	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.8021545410156	2	507.835791	1013.65703	-0.183	-9.2936E-05	2.6858	0.0013639	2.5028	0.001271	507.83706555116316	55.598	0.40584	55.442	55.26	55.666	-0.15601					18	10	2	0	0	0	0.027866	1	6099	6099		47.916	10.756	1	178070	+		4282	21410	2517	2528	5686	5686					0.150747750307346
ARRKNWKKF	9	Unmodified	_ARRKNWKKF_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000589009.5_1_19:10227257-10229639:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.560791015625	3	411.915758	1232.72544	0.79302	0.00032666	-1.7952	-0.00073947	-1.0022	-0.00041281	411.9149818405529	20.724	0.34555	20.528	20.286	20.632	-0.19577					12	6	3	0	0	0	0.024541	1	547	547		24.519	0	1	31125			4283	4463	2518	2529	5687	5687					0.11839019610579271
ARRLKKGK	8	Unmodified	_ARRLKKGK_					0	0	0		ENSG00000188404|ENST00000236147|SELL;nc|ENSG00000188404|P14151-2|SELL	ENSG00000188404|ENST00000236147|SELL	ENSG00000188404|ENST00000236147|SELL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7329406738281	2	478.827435	955.640317	-0.29449	-0.00014101	2.5382	0.0012154	2.2437	0.0010744	478.8286558908694	39.316	0.36725	39.151	38.898	39.265	-0.16458					16	9	2	0	0	0	0.027866	1	3301	3301		12.207	0	1	91964			4284	9718	2519	2530	5688	5688					0.16072274144801213
ARRLPRSSQ	9	Unmodified	_ARRLPRSSQ_					0	0	0			REV__ENSG00000140943|ENST00000343411|MBTPS1	REV__ENSG00000140943|ENST00000343411|MBTPS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.8123779296875	2	535.812513	1069.61047	0.96748	0.00051839	-1.2059	-0.00064613	-0.2384	-0.00012774	535.8117613595007	19.041	0.54282	19.041	18.823	19.366	0					24	10	4	0	0	0	0.70156	1	363	363		45.972	0	1	227460	+		4285	24049	2520	2531	5689	5689					0.07845290408795336
ARRLVDDTD	9	Unmodified	_ARRLVDDTD_					0	0	0		ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	ENSG00000104660|ENST00000321250|LEPROTL1	ENSG00000104660|ENST00000321250|LEPROTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.78564453125	2	530.772719	1059.53089	0.1803	9.57E-05	-3.7087	-0.0019685	-3.5284	-0.0018728	530.770387227028	42.926	0.28587	42.957	42.83	43.116	0.030827					12	7	2	0	0	0	0.024457	1	3948	3948		29.15	3.6994	1	102590			4286	2586	2521	2532	5690	5690					0.003501789441543224
ARRMFKVY	8	Unmodified	_ARRMFKVY_					0	0	0		ENSG00000129636|ENST00000320640|ITFG1;ITFG1|p.E376Q|1|0.08|ENSG00000129636|chr16:47260640-47260640|C/G|missense_variant	ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7686157226562	2	535.800029	1069.5855	0.72934	0.00039078	2.1448	0.0011492	2.8741	0.00154	535.800142979068	37.078	0.5377	37.078	36.805	37.343	0					21	13	2	0	0	0	0.027866	1	2982	2982		44.531	8.0843	1	73511			4287	4360	2522	2533	5691	5691					0.053495192818672876
ARRNPGPT	8	Unmodified	_ARRNPGPT_					0	0	0		ENST00000376561.7_1_11:70244668-70251423:+|nuORF	ENST00000376561.7_1_11:70244668-70251423:+|nuORF	ENST00000376561.7_1_11:70244668-70251423:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7296142578125	2	434.741025	867.467498	-0.77851	-0.00033845	-2.2064	-0.00095921	-2.9849	-0.0012977	434.739800165424	38.158	0.1978	38.076	37.918	38.116	-0.082512					7	5	2	0	0	0	0.027866	1	3152	3152		40.573	0	1	167690			4288	13180	2523	2534	5692	5692					0.028462830175612908
ARRPCLPD	8	Unmodified	_ARRPCLPD_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7642822265625	2	464.245086	926.47562	-1.2966	-0.00060192	0.069922	3.2461E-05	-1.2266	-0.00056946	464.2449287596313	38.075	0.70379	38.075	37.936	38.639	0					26	19	2	0	0	0	0.027866	1	3203	3203		12.959	5.2689	1	148720	+		4289	20794	2524	2535	5693	5693					0.009440939426667683
ARRPCLPD	8	Unmodified	_ARRPCLPD_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	464.245086	926.47562	-0.86502	-0.00040158	0.58533	0.00027174	-0.27969	-0.00012985	464.2452270232724	38.232	0.59692	38.15	37.777	38.374	-0.082516	-0.029818	3.5022E-05	NaN	12.959	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139990	+		4290	20794	2524	2535							0.009440939426667683
ARRPGLQT	8	Unmodified	_ARRPGLQT_					0	0	0			REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF	REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7531433105469	2	449.764501	897.514448	0.3571	0.00016061	0.61106	0.00027483	0.96816	0.00043544	449.76447336982835	65.512	0.10344	65.512	65.426	65.529	0					4	2	2	0	0	0	0.027866	1	7759	7759		37.159	6.6555	1	62524	+		4291	31622	2525	2536	5694	5694					0.06159142568697007
ARRPPGKPNP	10	Unmodified	_ARRPPGKPNP_					0	0	0		ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22311488-22316996:-|nuORF;ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENSG00000100038|ENST00000357179|TOP3B;ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENSG00000100038|ENST00000357179|TOP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3164672851562	2	545.317432	1088.62031	-1.8246	-0.00099497	0.13196	7.196E-05	-1.6926	-0.00092301	545.3173861251879	92.083	1.5585	91.939	91.617	93.175	-0.14356					78	36	4	0	0	0	1.1307	1	11291	11291		26.693	1.1189	1	1597200			4292	2123;14608	2526	2537	5695	5695					0.07954478414194455
ARRPRPRFR	9	Unmodified	_ARRPRPRFR_					0	0	0			REV__ENST00000263754.4_1_3:20081673-20082198:+|nuORF	REV__ENST00000263754.4_1_3:20081673-20082198:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.55975341796875	3	404.583002	1210.72718	0.45618	0.00018456	-4.0739	-0.0016482	-3.6177	-0.0014637	404.5817473902989	33.459	0.23237	33.258	33.133	33.365	-0.20019					9	5	2	0	0	0	0.024484	1	2368	2368		30.318	16.232	1	90004	+		4293	29697	2527	2538	5696	5696					0.1302407341918297
ARRPSCFQS	9	Unmodified	_ARRPSCFQS_					0	0	0			REV__ENSG00000217128|ENST00000510461|FNIP1	REV__ENSG00000217128|ENST00000510461|FNIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3043212890625	2	526.258725	1050.5029	-0.075628	-3.98E-05	-0.46685	-0.00024568	-0.54248	-0.00028548	526.2582699237407	69.851	0.7062	69.6	69.317	70.023	-0.25063					28	16	2	0	0	0	0.024397	1	8116	8116		31.53	0	1	427890	+		4294	28820	2528	2539	5697	5697					-0.020334225169335696
ARRQARHA	8	Unmodified	_ARRQARHA_					0	0	0			REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.80767822265625	2	483.278641	964.542729	0.49445	0.00023896	3.8724	0.0018715	4.3669	0.0021104	483.2814333741058	64.331	0.55	64.376	63.975	64.525	0.045502					29	14	3	0	0	0	0.027866	1	7496	7496		57.811	13.694	1	333240	+		4295	29445	2529	2540	5698	5698					0.05903885268639897
ARRQLSDL	8	Unmodified	_ARRQLSDL_					0	0	0		ENST00000383701.7_1_3:69061707-69061878:-|nuORF	ENST00000383701.7_1_3:69061707-69061878:-|nuORF	ENST00000383701.7_1_3:69061707-69061878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.29595947265625	2	479.775065	957.535577	0.68956	0.00033083	-3.8457	-0.0018451	-3.1562	-0.0015143	479.77318191174163	69.895	0.2855	69.895	69.669	69.954	0					11	6	2	0	0	0	0.027866	1	8431	8431		32.812	0	1	179200			4296	13369	2530	2541	5699	5699					0.0551110787757807
ARRRFFRLLKW	11	Unmodified	_ARRRFFRLLKW_					0	0	0			REV__ENST00000497791.5_1_3:124456468-124456537:+|nuORF	REV__ENST00000497791.5_1_3:124456468-124456537:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7686767578125	3	516.984395	1547.93135	-0.5386	-0.00027845	1.9236	0.00099447	1.385	0.00071603	517.319613594391	52.564	1.5004	52.564	51.871	53.372	0					99	39	3	0	0	0	0.024876	1	5595	5595		9.2118	0	1	648020	+		4297	33859	2531	2542	5700	5700					0.1793059278986675
ARRRGKGVK	9	Unmodified	_ARRRGKGVK_					0	0	0			REV__ENST00000580320.5_1_17:79995441-79995558:-|nuORF	REV__ENST00000580320.5_1_17:79995441-79995558:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7711791992188	2	514.333416	1026.65228	-0.27836	-0.00014317	2.2836	0.0011746	2.0053	0.0010314	514.3344264965106	43.551	0.50951	43.582	43.302	43.812	0.030827					26	13	3	0	0	0	0.024457	1	4007	4007		15.642	0	1	258060	+		4298	35514	2532	2543	5701	5701					0.14001890887993795
ARRRPSLL	8	Unmodified	_ARRRPSLL_					0	0	0		ENST00000361961.7_1_12:39764061-39837002:-|nuORF	ENST00000361961.7_1_12:39764061-39837002:-|nuORF	ENST00000361961.7_1_12:39764061-39837002:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.24981689453125	2	484.809242	967.603932	-0.67555	-0.00032751	3.4567	0.0016758	2.7811	0.0013483	484.81051003275195	79.79	0.46066	79.811	79.478	79.938	0.021446					13	10	2	0	0	0	0.027866	1	9845	9845		12.959	0	1	64185			4299	12810	2533	2544	5702	5702					0.11883397248084293
ARRRRKPR	8	Unmodified	_ARRRRKPR_					0	0	0		ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3350219726562	2	548.357757	1094.70096	-1.2694	-0.00069608	-2.69	-0.0014751	-3.9594	-0.0021712	548.3558464879934	43.514	0.21764	43.514	43.44	43.658	0					6	5	2	0	0	0	0.027866	1	4088	4088		11.511	0	1	45816			4300	9196	2534	2545	5703	5703					0.15739804247732536
ARRRVLSP	8	Unmodified	_ARRRVLSP_					0	0	0		ENST00000321287.12_1_19:52839700-52851056:+|nuORF	ENST00000321287.12_1_19:52839700-52851056:+|nuORF	ENST00000321287.12_1_19:52839700-52851056:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7906188964844	2	477.801417	953.588282	-0.051298	-2.451E-05	3.1384	0.0014995	3.0871	0.001475	477.8025905582083	53.059	0.54744	53.155	52.753	53.3	0.095669					24	14	2	0	0	0	0.027866	1	5669	5669		12.959	6.2236	1	272230			4301	12206	2535	2546	5704	5704					0.10963110731040615
ARRSLYPL	8	Unmodified	_ARRSLYPL_					0	0	0			REV__ENST00000313755.9_1_22:18900690-18907344:-|nuORF	REV__ENST00000313755.9_1_22:18900690-18907344:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2712707519531	2	488.290351	974.566149	2.2136	0.0010809	-3.1647	-0.0015453	-0.9511	-0.00046441	488.2885542945214	24.175	0.44335	23.994	23.671	24.114	-0.18089					14	9	2	0	0	0	0.027866	1	989	989		44.117	8.4985	1	53209	+		4302	21037	2536	2547	5705	5705					0.0778488626260696
ARRSPDPG	8	Unmodified	_ARRSPDPG_					0	0	0		ENST00000372458.7_1_1:43830941-43833680:-|nuORF;ENST00000465321.5_1_1:43830941-43833656:-|nuORF	ENST00000372458.7_1_1:43830941-43833680:-|nuORF	ENST00000372458.7_1_1:43830941-43833680:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.22528076171875	2	428.225208	854.435863	0.5074	0.00021728	-0.089893	-3.8494E-05	0.41751	0.00017879	428.2250912927943	25.559	1.2919	25.639	25.336	26.628	0.08009					57	30	4	0	0	0	1.0009	1	1175	1175		37.159	2.9866	1	1541200			4303	13042	2537	2548	5706	5706					0.0028229026361259457
ARRVVPSL	8	Unmodified	_ARRVVPSL_					0	0	0			REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.28509521484375	2	449.285069	896.555585	-0.33381	-0.00014998	0.20153	9.0543E-05	-0.13229	-5.9434E-05	449.28504697638544	34.952	1.1256	34.952	34.444	35.57	0					75	29	4	0	0	0	0.87148	1	2630	2630		53.351	2.016	1	3082300	+		4304	35287	2538	2549	5707	5707					0.10316903608190842
ARRWLRTK	8	Unmodified	_ARRWLRTK_					0	0	0		ENSG00000141506|ENST00000447110|PIK3R5;ENST00000578515.5_1_17:8785060-8814811:-|nuORF	ENSG00000141506|ENST00000447110|PIK3R5	ENSG00000141506|ENST00000447110|PIK3R5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7846069335938	2	543.835791	1085.65703	-0.44913	-0.00024425	-1.9538	-0.0010626	-2.403	-0.0013068	543.8347638202537	51.048	0.50523	51.048	50.707	51.212	0					20	13	2	0	0	0	0.027866	1	5402	5402		16.473	0	1	209870			4305	5500	2539	2550	5708	5708					0.11762775030729244
ARSAASKL	8	Unmodified	_ARSAASKL_					0	0	0			REV__ENST00000355827.8_1_X:95939790-95940039:+|nuORF	REV__ENST00000355827.8_1_X:95939790-95940039:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.5363464355469	2	402.240327	802.466101	0.48822	0.00019638	-3.5387	-0.0014234	-3.0504	-0.001227	402.23888779598695	32.838	0.65889	32.607	32.136	32.794	-0.23107					22	15	2	0	0	0	0.027866	1	2285	2285		35.618	0	1	213880	+		4306	30782	2540	2551	5709	5709					0.05696648928801551
ARSCGRSLEL	10	Unmodified	_ARSCGRSLEL_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.285888671875	2	546.28494	1090.55533	-0.825	-0.00045069	2.44	0.0013329	1.615	0.00088223	546.2859382812053	85.721	2.1877	85.663	84.689	86.877	-0.05761					112	51	3	0	0	0	0.56936	1	10740	10740		80.455	3.137	1	688170	+		4307	24038	2541	2552	5710	5710					0.013671158259967342
ARSESDRSV	9	Unmodified	_ARSESDRSV_					0	0	0			REV__ENST00000333039.2_2_22:39217357-39217534:-|nuORF	REV__ENST00000333039.2_2_22:39217357-39217534:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7514953613281	2	503.749244	1005.48394	0.010616	5.3479E-06	3.5338	0.0017802	3.5445	0.0017855	503.7509773970321	33.723	1.5534	33.779	33.176	34.729	0.056568					104	39	5	0	0	0	0.2508	1	2376	2376		82.241	1.7859	1	4402000	+		4308	30500	2542	2553	5711	5711					-0.01858680606994767
ARSGLILLI	9	Unmodified	_ARSGLILLI_					0	0	0			REV__ENST00000244776.11_1_6:18258274-18264769:-|nuORF	REV__ENST00000244776.11_1_6:18258274-18264769:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.75921630859375	2	478.318577	954.622602	-0.035852	-1.7149E-05	-0.59624	-0.00028519	-0.63209	-0.00030234	478.31821610366745	38.683	0.42578	38.457	38.21	38.636	-0.2257					20	10	3	0	0	0	0.023635	1	3163	3163		66.429	0	1	116920	+		4309	29469	2543	2554	5712	5712					0.14347514099279124
ARSGLILLI	9	Unmodified	_ARSGLILLI_					0	0	0			REV__ENST00000244776.11_1_6:18258274-18264769:-|nuORF	REV__ENST00000244776.11_1_6:18258274-18264769:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.318577	954.622602	-0.72955	-0.00034896	1.3123	0.00062769	0.58274	0.00027873	478.3188199097757	38.532	0.40767	38.352	38.203	38.611	-0.17929	-0.063461	0.00060381	NaN	66.429	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133760	+		4310	29469	2543	2554							0.14347514099279124
ARSGRIAPAL	10	Unmodified	_ARSGRIAPAL_					0	0	0		ENST00000508243.5_1_4:159131615-159132640:+|nuORF	ENST00000508243.5_1_4:159131615-159132640:+|nuORF	ENST00000508243.5_1_4:159131615-159132640:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27471923828125	2	506.306532	1010.59851	-0.094811	-4.8003E-05	-2.6697	-0.0013517	-2.7645	-0.0013997	506.3058951954101	67.078	0.41528	67.102	66.855	67.27	0.023911					24	9	3	0	0	0	0.03519	1	7917	7917		32.812	0	1	855320			4311	15777	2544	2555	5713	5713					0.09363673665598071
ARSLAATL	8	Unmodified	_ARSLAATL_					0	0	0			REV__ENST00000359393.6_1_11:64645871-64646596:-|nuORF	REV__ENST00000359393.6_1_11:64645871-64646596:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.90374755859375	2	401.742702	801.470852	0.52865	0.00021238	-0.23766	-9.5478E-05	0.29099	0.0001169	401.7425904540256	30.825	0.5414	30.647	30.41	30.952	-0.17818					19	12	3	0	0	0	0.027866	1	1965	1965		25.45	6.0902	1	254540	+		4312	30879	2545	2556	5714	5714					0.06217533071571779
ARSLDRRLKL	10	Unmodified	_ARSLDRRLKL_					0	0	0			REV__ENST00000495790.1_1_10:32581422-32635732:-|nuORF	REV__ENST00000495790.1_1_10:32581422-32635732:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8861999511719	3	409.926322	1226.75714	0.26879	0.00011018	-2.7316	-0.0011197	-2.4628	-0.0010096	410.25945919920827	34.439	0.19388	34.434	34.375	34.568	-0.0045624					5	4	2	0	0	0	0.03519	1	2569	2569		29.551	0	1	27859	+		4313	22543	2546	2557	5715	5715					0.15282967573875794
ARSLLPPVL	9	Unmodified	_ARSLLPPVL_					0	0	0			REV__ENSG00000234409|ENST00000439765|CCDC188	REV__ENSG00000234409|ENST00000439765|CCDC188	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.3110046386719	2	483.310752	964.606951	-0.29481	-0.00014249	0.77673	0.0003754	0.48192	0.00023292	483.31087963617847	67.189	0.98432	67.213	66.728	67.712	0.023911					73	23	4	0	0	0	0.40179	1	7947	7947		65.803	4.8312	1	2301100	+		4314	28914	2547	2558	5716	5716					0.12323227582214713
ARSLPQLAI	9	Unmodified	_ARSLPQLAI_					0	0	0			REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.79803466796875	2	484.798009	967.581465	0.55749	0.00027027	-1.5757	-0.00076388	-1.0182	-0.00049361	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.50848	1	6743	6743		58.782	2.0609	1	98413000	+		4315	33049	2548	2559	5717	5717					0.09637753059791976
ARSLRLLAEF	10	Unmodified	_ARSLRLLAEF_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.3200073242188	2	588.348397	1174.68224	0.51481	0.00030289	-0.88743	-0.00052212	-0.37261	-0.00021923	588.3478420895982	53.7	0.73918	53.796	53.518	54.258	0.095669					43	20	4	0	0	0	0.03519	1	5804	5804		19.997	0	1	1346700			4316	3805	2549	2560	5718	5718					0.10188785042623749
ARSMKTAATP	10	Unmodified	_ARSMKTAATP_					0	0	0			REV__ENSG00000173599|ENST00000393960|PC	REV__ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2799072265625	2	517.276583	1032.53861	-0.78401	-0.00040555	0.55983	0.00028959	-0.22417	-0.00011596	517.2772967298008	55.601	0.36879	55.385	55.268	55.637	-0.21551					14	9	2	0	0	0	0.03519	1	5950	5950		49.536	8.7579	1	111060	+		4317	26789	2550	2561	5719	5719					0.02364614940051979
ARSNLPLAL	9	Unmodified	_ARSNLPLAL_					0	0	0		ENSG00000175315|ENST00000312134|CST6	ENSG00000175315|ENST00000312134|CST6	ENSG00000175315|ENST00000312134|CST6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7774963378906	2	477.790184	953.565815	-0.077993	-3.7264E-05	2.3226	0.0011097	2.2446	0.0010725	477.78957360823983	27.343	0.66514	27.33	27.134	27.799	-0.012983					25	17	2	0	0	0	0.023181	1	1527	1527		71.296	4.8664	1	588750			4318	8550	2551	2562	5720	5720					0.08717466542748298
ARSPARISP	9	Unmodified	_ARSPARISP_					0	0	0		ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7774353027344	2	477.777608	953.540663	0.26524	0.00012673	-1.1472	-0.00054811	-0.88196	-0.00042138	477.77724843167783	27.381	2.813	27.381	26.447	29.26	0					206	70	5	0	0	0	0.48817	3	1475	1475;1499;1548		60.118	5.3419	1	85113000			4319	1014	2552	2563	5721;5722;5723	5721					0.0620341174017085
ARSPARISP	9	Unmodified	_ARSPARISP_					0	0	0		ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7774963378906	2	477.777608	953.540663	-0.86432	-0.00041295	-0.014007	-6.692E-06	-0.87832	-0.00041964	477.77780002341314	27.145	2.5781	27.226	26.29	28.868	0.081293					199	64	5	0	0	0	0.48817	1	1452	1452		60.118	5.3419	1	98548000			4320	1014	2552	2563	5724	5724					0.0620341174017085
ARSRKQPQ	8	Unmodified	_ARSRKQPQ_					0	0	0			REV__nc|ENSG00000167034|Q99801-3|NKX3-1	REV__nc|ENSG00000167034|Q99801-3|NKX3-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3037109375	2	485.780682	969.546811	1.0893	0.00052914	-2.244	-0.0010901	-1.1548	-0.00056096	485.7785879215822	20.135	0.43177	19.937	19.752	20.184	-0.19865					11	8	2	0	0	0	0.027866	1	523	523		57.811	14.947	1	21926	+		4321	26098	2553	2564	5725	5725					0.060819299717081776
ARSRPEVLHL	10	Unmodified	_ARSRPEVLHL_					0	0	0		ENST00000571816.5_2_17:4843500-4843825:+|nuORF	ENST00000571816.5_2_17:4843500-4843825:+|nuORF	ENST00000571816.5_2_17:4843500-4843825:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3435668945312	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.1162	1	11655	11655		19.104	0.84144	1	15816000			4322	17048	2554	2565	5726	5726					0.09147016757151505
ARSRPIGLV	9	Unmodified	_ARSRPIGLV_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7673645019531	2	484.803626	967.592698	-0.90941	-0.00044088	-0.21246	-0.000103	-1.1219	-0.00054389	484.8034071465575	34.877	0.78866	34.928	34.599	35.388	0.050255					62	20	4	0	0	0	0.024021	1	2575	2575		58.782	11.125	1	2909100	+		4323	28421	2555	2566	5727	5727					0.10760575153949503
ARSSGVLLSGV	11	Unmodified	_ARSSGVLLSGV_					0	0	0			REV__ENST00000503528.1_1_4:36335135-36335312:+|nuORF	REV__ENST00000503528.1_1_4:36335135-36335312:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.96599	1	10752	10752		44.377	0.26039	1	14210000	+		4324	33957	2556	2567	5728	5728					0.07224530363305348
ARSSKHSR	8	Unmodified	_ARSSKHSR_					0	0	0		ENST00000498519.5_1_11:70544286-70653194:-|nuORF	ENST00000498519.5_1_11:70544286-70653194:-|nuORF	ENST00000498519.5_1_11:70544286-70653194:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7951354980469	2	464.757207	927.499861	-0.16425	-7.6338E-05	-4.0826	-0.0018974	-4.2468	-0.0019737	464.75540850911244	34.29	0.5416	34.083	33.824	34.366	-0.20696					42	13	4	0	0	0	0.027866	1	2484	2484		50.025	11.218	1	661530			4325	15623	2557	2568	5729	5729					0.03321070420565775
ARSTRNPDL	9	Unmodified	_ARSTRNPDL_					0	0	0			REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7998657226562	2	515.275429	1028.53631	-0.71064	-0.00036617	1.0868	0.00056001	0.37617	0.00019383	515.2757792845362	45.271	0.24578	45.171	44.942	45.188	-0.099445					9	6	2	0	0	0	0.024288	1	4282	4282		52.937	0	1	129560	+		4326	37487	2558	2569	5730	5730					0.02317902526601756
ARSVKHPGL	9	Unmodified	_ARSVKHPGL_					0	0	0			REV__ENST00000580750.5_1_17:79994229-79994415:-|nuORF	REV__ENST00000580750.5_1_17:79994229-79994415:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7803039550781	2	482.787976	963.561398	-0.53211	-0.00025689	1.7634	0.00085133	1.2313	0.00059444	482.7886583828712	29.267	0.75552	29.27	28.713	29.469	0.0031357					34	18	2	0	0	0	0.024436	1	1751	1751		30.504	1.3541	1	268760	+		4327	35523	2559	2570	5731	5731					0.07816002119852783
ARSVLAAALL	10	Unmodified	_ARSVLAAALL_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7623596191406	2	492.813659	983.612765	0.076044	3.7476E-05	2.1761	0.0010724	2.2521	0.0011099	492.8147865625641	77.98	0.4097	77.98	77.792	78.202	0					11	9	2	0	0	0	0.03519	1	9620	9620		45.972	0	1	168990			4328	4927	2560	2571	5732	5732					0.12030326093884014
ARTCFFIL	8	Unmodified	_ARTCFFIL_					0	0	0			REV__ENSG00000188211|ENST00000338965|NCR3LG1	REV__ENSG00000188211|ENST00000338965|NCR3LG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.83648681640625	2	485.762581	969.510608	-0.909	-0.00044156	-2.4768	-0.0012031	-3.3858	-0.0016447	485.7612822223364	33.955	0.70653	33.779	33.545	34.252	-0.17557					36	17	3	0	0	0	0.027866	1	2417	2417		33.516	0	1	154010	+		4329	28020	2561	2572	5733	5733					0.02463336750633971
ARTEAEKLK	9	Unmodified	_ARTEAEKLK_					0	0	0			REV__nc|ENSG00000198467|P07951-3|TPM2;REV__nc|ENSG00000143549|P06753-4|TPM3	REV__nc|ENSG00000143549|P06753-4|TPM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3048706054688	2	523.303655	1044.59276	-1.2531	-0.00065576	1.0976	0.00057438	-0.1555	-8.1375E-05	523.3041390138727	21.306	0.44276	21.094	20.872	21.315	-0.2128					27	8	4	0	0	0	0.2508	1	628	628		82.241	4.9229	1	548650	+	+	4330	37065;36736	2562	2573	5734	5734					0.07224530363282611
ARTEELPSP	9	Unmodified	_ARTEELPSP_					0	0	0			REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.20855712890625	2	500.258914	998.503274	-0.31715	-0.00015865	-1.7398	-0.00087034	-2.0569	-0.001029	500.257906795046	43.484	0.46848	43.372	43.145	43.614	-0.11253					17	12	2	0	0	0	0.024405	1	3985	3985		20.947	0.4651	1	205870	+		4331	24263	2563	2574	5735	5735					0.003962756839086978
ARTLWQLR	8	Unmodified	_ARTLWQLR_					0	0	0		ENST00000405515.5_2_11:67957596-67981223:-|nuORF	ENST00000405515.5_2_11:67957596-67981223:-|nuORF	ENST00000405515.5_2_11:67957596-67981223:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7481079101562	2	522.309075	1042.6036	0.18814	9.8269E-05	3.1212	0.0016302	3.3093	0.0017285	522.3125394022288	36.503	0.71922	36.287	36.05	36.769	-0.21661					32	17	3	0	0	0	0.027866	1	2928	2928		34.173	0	1	195130			4332	13720	2564	2575	5736	5736					0.08399977528233649
ARTPHRLP	8	Unmodified	_ARTPHRLP_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2714538574219	2	474.280318	946.546083	-0.45724	-0.00021686	3.8448	0.0018235	3.3876	0.0016067	474.28198677635424	80.57	0.67204	80.418	80.008	80.68	-0.15169					23	15	2	0	0	0	0.027866	1	9929	9929		57.811	0	1	110030	+		4333	25273	2565	2576	5737	5737					0.07067135322643026
ARTPLAQLSG	10	Unmodified	_ARTPLAQLSG_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7958984375	2	507.290548	1012.56654	-1.1943	-0.00060585	3.5884	0.0018204	2.3941	0.0012145	507.29159519554474	21.127	0.88763	20.914	20.475	21.363	-0.2128					39	17	4	0	0	0	1.0236	1	634	634		42.864	4.0581	1	223580	+		4334	24273	2566	2577	5738	5738					0.06076261191810772
ARTPLGFLV	9	Unmodified	_ARTPLGFLV_					0	0	0			REV__ENST00000505253.1_1_5:10413496-10422048:+|nuORF	REV__ENST00000505253.1_1_5:10413496-10422048:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.25079345703125	2	487.295102	972.575651	-0.73625	-0.00035877	3.6369	0.0017723	2.9007	0.0014135	487.2966156799184	33.143	0.41838	33.143	32.903	33.321	0					22	10	3	0	0	0	0.024436	1	2385	2385		30.504	3.7075	1	179010	+		4335	34006	2567	2578	5739	5739					0.08826654548147417
ARTRRKVL	8	Unmodified	_ARTRRKVL_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;ENST00000552221.1_1_12:108941677-108954930:-|nuORF;nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-3|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3132019042969	2	500.330342	998.646131	-0.23491	-0.00011753	-1.1215	-0.00056112	-1.3564	-0.00067865	500.330741098995	76.378	0.55853	76.11	75.779	76.338	-0.26806					28	13	3	0	0	0	0.027866	1	9055	9055		44.117	0	1	309720			4336	1572	2568	2579	5740	5740					0.14675372656472518
ARTSGGYTAL	10	Unmodified	_ARTSGGYTAL_					0	0	0		ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77154541015625	2	498.759081	995.503609	-0.79726	-0.00039764	-1.8542	-0.00092481	-2.6515	-0.0013225	498.75785438829615	28.505	0.20109	28.353	28.283	28.484	-0.15195					6	4	2	0	0	0	0.03519	1	1642	1642		14.865	0	1	60573			4337	10099	2569	2580	5741	5741					0.005676954037426185
ARTSNTVLN	9	Unmodified	_ARTSNTVLN_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|325|3|anti-sense;chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|16	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|325|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|325|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2818298339844	2	488.26453	974.514508	-1.2586	-0.00061451	-1.3857	-0.00067659	-2.6443	-0.0012911	488.2633771486617	80.909	0.8452	80.933	80.403	81.248	0.023911					41	20	3	0	0	0	0.024292	1	9953	9953		68.787	0	1	386740			4338	293	2570	2581	5742	5742					0.02623097778052852
ARTYYIIAI	9	Unmodified	_ARTYYIIAI_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.282958984375	2	542.313492	1082.61243	-0.90266	-0.00048953	0.64182	0.00034807	-0.26085	-0.00014146	542.3136549938612	52.405	0.55161	52.286	52.048	52.599	-0.11875					19	13	2	0	0	0	0.024535	1	5418	5418		18.324	3.6603	1	320620	+		4339	31835	2571	2582	5743	5743					0.07442906374035374
ARVAEKLK	8	Unmodified	_ARVAEKLK_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7931823730469	2	457.792727	913.5709	0.35162	0.00016097	-0.052088	-2.3846E-05	0.29953	0.00013712	457.7925260999196	18.36	0.3947	18.228	18.006	18.401	-0.13147					15	7	3	0	0	0	0.87148	1	274	274		53.351	0	1	98819	+		4340	23649	2572	2583	5744	5744					0.11065770405366493
ARVAEKLK	8	Unmodified	_ARVAEKLK_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	457.792727	913.5709	3.2748	0.0014992	-2.7636	-0.0012652	0.51121	0.00023403	457.7912473603427	18.197	0.48989	18.197	17.892	18.382	0	-0.099344	-0.0010775	NaN	53.351	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80331	+		4341	23649	2572	2583							0.11065770405366493
ARVAEKLK	8	Unmodified	_ARVAEKLK_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	457.792727	913.5709	0.35162	0.00016097	-0.052088	-2.3846E-05	0.29953	0.00013712	457.7925260999196	18.36	0.3947	18.228	18.006	18.401	-0.13147	-0.068313	0.0014052	NaN	53.351	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98819	+		4342	23649	2572	2583							0.11065770405366493
ARVDPAHLGL	10	Unmodified	_ARVDPAHLGL_					0	0	0		ENST00000302190.8_1_8:97506012-97605724:+|nuORF;ENST00000518385.5_3_8:97506087-97614626:+|nuORF	ENST00000302190.8_1_8:97506012-97605724:+|nuORF	ENST00000302190.8_1_8:97506012-97605724:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.79833984375	2	524.79854	1047.58253	-1.2508	-0.00065644	1.004	0.00052689	-0.24686	-0.00012955	524.7989083355114	39.819	0.73171	39.707	39.363	40.095	-0.11223					45	19	3	0	0	0	1.0393	1	3437	3437		40.778	1.5253	1	2089800			4343	11949	2573	2584	5745	5745					0.060639674286903755
ARVDPGSISP	10	Unmodified	_ARVDPGSISP_					0	0	0		ENST00000484676.1_1_1:6687887-6688316:+|nuORF	ENST00000484676.1_1_1:6687887-6688316:+|nuORF	ENST00000484676.1_1_1:6687887-6688316:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.292724609375	2	499.766906	997.519259	-0.12218	-6.1062E-05	0.46156	0.00023067	0.33938	0.00016961	500.2685501478503	47.637	0.4279	47.484	47.336	47.764	-0.15301					21	12	2	0	0	0	0.03519	1	4761	4761		30.318	0	1	315290			4344	15308	2574	2585	5746	5746					0.020399819208023473
ARVFRSIPP	9	Unmodified	_ARVFRSIPP_					0	0	0		ENST00000586280.1_1_19:13041410-13044450:-|nuORF;ENST00000592662.5_1_19:13039347-13044510:-|nuORF;nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA	ENST00000586280.1_1_19:13041410-13044450:-|nuORF	ENST00000586280.1_1_19:13041410-13044450:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8126220703125	2	521.811451	1041.60835	-0.20542	-0.00010719	2.7145	0.0014165	2.5091	0.0013093	521.8128611872344	41.5	0.74377	41.377	40.943	41.687	-0.12318					72	20	4	0	0	0	0.96322	1	3693	3693		27.882	1.1893	1	15953000			4345	8872	2575	2586	5747	5747					0.08920861671003877
ARVGDVRP	8	Unmodified	_ARVGDVRP_					0	0	0		SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2514343261719	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	0.96769	2	9855	9801;9855		42.396	6.7778	1	1708300			4346	37875	2576	2587	5748;5749	5749					0.04839453677379879
ARVGDVRP	8	Unmodified	_ARVGDVRP_					0	0	0		SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2515563964844	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	1.0198	2	9913	9851;9913		34.173	3.6994	1	1610700			4347	37875	2576	2587	5750;5751	5751					0.04839453677379879
ARVGDVRP	8	Unmodified	_ARVGDVRP_					0	0	0		SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.251220703125	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	0.96769	3	9379	9379;9584;9647		42.396	10.441	1	2257900			4348	37875	2576	2587	5752;5753;5754	5752					0.04839453677379879
ARVGDVRP	8	Unmodified	_ARVGDVRP_					0	0	0		SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2514343261719	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	0.96769	2	9383	9383;9396		42.396	8.2236	1	2292300			4349	37875	2576	2587	5755;5756	5755					0.04839453677379879
ARVGDVRP	8	Unmodified	_ARVGDVRP_					0	0	0		SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	SIPA1L3|p.L26R|1|0.09|ENSG00000105738|chr19:38081642-38081642|T/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2519226074219	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	0.96769	4	9596	9349;9446;9596;9609		42.396	10.441	1	1872200			4350	37875	2576	2587	5757;5758;5759;5760	5759					0.04839453677379879
ARVGKSSW	8	Unmodified	_ARVGKSSW_					0	0	0			REV__nc|ENSG00000100884|O95741-2|CPNE6	REV__nc|ENSG00000100884|O95741-2|CPNE6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.7457275390625	2	445.745776	889.477	2.1314	0.00095007	-2.8663	-0.0012776	-0.73484	-0.00032755	445.7445362620839	24.705	1.4587	24.524	24.198	25.656	-0.18089					75	33	4	0	0	0	0.59392	1	1059	1059		76.847	0	1	11669000	+		4351	36524	2577	2588	5761	5761					0.027840513030810143
ARVGYGRSTG	10	Unmodified	_ARVGYGRSTG_					0	0	0			REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2714233398438	2	512.270147	1022.52574	0.51992	0.00026634	1.1858	0.00060744	1.7057	0.00087378	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	0.98527	1	13689	13689		47.96	7.1814	1	6752000	+		4352	31949	2578	2589	5762	5762					0.01537919872191651
ARVGYGRSTG	10	Unmodified	_ARVGYGRSTG_					0	0	0			REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2706909179688	2	512.270147	1022.52574	-0.23912	-0.0001225	1.8091	0.00092674	1.57	0.00080424	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	1.0719	1	13693	13693		36.447	2.2742	1	6463600	+		4353	31949	2578	2589	5763	5763					0.01537919872191651
ARVGYGRSTG	10	Unmodified	_ARVGYGRSTG_					0	0	0			REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2709350585938	2	512.270147	1022.52574	-0.053609	-2.7462E-05	1.4432	0.0007393	1.3896	0.00071184	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	1.1333	2	13285	13285;13336		28.081	4.5588	1	4944800	+		4354	31949	2578	2589	5764;5765	5764					0.01537919872191651
ARVGYGRSTG	10	Unmodified	_ARVGYGRSTG_					0	0	0			REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2710571289062	2	512.270147	1022.52574	-1.3044	-0.00066821	2.7625	0.0014152	1.4581	0.00074695	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.94316	1	13260	13260		51.193	3.5354	1	5095800	+		4355	31949	2578	2589	5766	5766					0.01537919872191651
ARVGYGRSTG	10	Unmodified	_ARVGYGRSTG_					0	0	0			REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	REV__ENST00000409158.5_1_2:131904800-131904905:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.270751953125	2	512.270147	1022.52574	0.53902	0.00027612	0.90867	0.00046548	1.4477	0.00074161	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	1.0909	2	13269	13269;13323		33.922	2.374	1	5030900	+		4356	31949	2578	2589	5767;5768	5767					0.01537919872191651
ARVIVGGSSEY	11	Unmodified	_ARVIVGGSSEY_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MSMS	OPSCC_40_ClassI_Rep-1	4	569.2962036132812	2	569.29857	1136.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.146	1	45.047	44.547	45.547	-0.099445								0	0	0	0.74297	1	4260	4260		71.877	13.096	1				4357	1482	2579	2590	5769	5769					0.01975922638052907
ARVKYKYKL	9	Unmodified	_ARVKYKYKL_					0	0	0		ENST00000273375.7_1_3:120407987-120408086:-|nuORF	ENST00000273375.7_1_3:120407987-120408086:-|nuORF	ENST00000273375.7_1_3:120407987-120408086:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.2943115234375	2	584.863683	1167.71281	-0.068776	-4.0225E-05	-2.9024	-0.0016975	-2.9712	-0.0017377	584.8617554014154	50.656	0.48242	50.544	50.267	50.749	-0.11163					23	12	3	0	0	0	0.024487	1	5183	5183		24.203	2.2429	1	657410			4358	11666	2580	2591	5770	5770					0.1356656342768474
ARVKYKYKL	9	Unmodified	_ARVKYKYKL_					0	0	0		ENST00000273375.7_1_3:120407987-120408086:-|nuORF	ENST00000273375.7_1_3:120407987-120408086:-|nuORF	ENST00000273375.7_1_3:120407987-120408086:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.2965698242188	2	584.863683	1167.71281	-0.22845	-0.00013361	-2.9913	-0.0017495	-3.2198	-0.0018831	584.861794257067	50.737	0.36773	50.556	50.317	50.685	-0.18071					19	9	3	0	0	0	0.024541	1	5171	5171		30.504	5.9844	1	504640			4359	11666	2580	2591	5771	5771					0.1356656342768474
ARVLADVLQP	10	Unmodified	_ARVLADVLQP_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.324462890625	2	541.321848	1080.62914	-1.8614	-0.0010076	0.80772	0.00043724	-1.0537	-0.00057038	541.3222634997059	59.951	1.9031	60.03	59.419	61.322	0.078888					140	50	4	0	0	0	0.77808	1	6778	6778		62.107	8.756	1	24287000			4360	17022	2581	2592	5772	5772					0.09205407259992171
ARVLGTPPI	9	Unmodified	_ARVLGTPPI_					0	0	0			REV__ENSG00000132664|ENST00000377603|POLR3F	REV__ENSG00000132664|ENST00000377603|POLR3F	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2873229980469	2	462.287277	922.560001	0.7174	0.00033165	-0.24353	-0.00011258	0.47387	0.00021907	462.28718933821114	59.597	1.0144	59.397	58.816	59.83	-0.20016					62	27	4	0	0	0	0.39228	1	6775	6775		66.429	0.6261	1	4814200	+		4361	23304	2582	2593	5773	5773					0.09562368031083679
ARVLLPSTG	9	Unmodified	_ARVLLPSTG_					0	0	0		ENSG00000235268|ENST00000450979|KDM4E	ENSG00000235268|ENST00000450979|KDM4E	ENSG00000235268|ENST00000450979|KDM4E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2642822265625	2	457.276909	912.539266	-0.205	-9.3744E-05	-2.3577	-0.0010781	-2.5627	-0.0011719	457.27511871014013	81.064	0.25082	80.921	80.817	81.068	-0.14249					8	5	2	0	0	0	0.024374	1	9727	9727		40.778	19.831	1	52686			4362	10730	2583	2594	5774	5774					0.07949777651435852
ARVLPLMQIP	10	Unmodified	_ARVLPLMQIP_					0	0	0		ENST00000311177.6_1_17:46699388-46699802:-|nuORF	ENST00000311177.6_1_17:46699388-46699802:-|nuORF	ENST00000311177.6_1_17:46699388-46699802:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3109741210938	2	569.344269	1136.67399	-0.28426	-0.00016184	-0.70346	-0.00040051	-0.98772	-0.00056235	569.343887156246	31.324	0.1902	31.171	31.006	31.197	-0.15231					6	4	2	0	0	0	0.03519	1	2034	2034		14.865	0	1	115470			4363	12079	2584	2595	5775	5775					0.11111514801677913
ARVLQLARA	9	Unmodified	_ARVLQLARA_					0	0	0			REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3069763183594	2	499.3169	996.619247	0.81486	0.00040687	1.7059	0.00085179	2.5208	0.0012587	499.31763379177767	96.491	0.87128	96.368	96.147	97.019	-0.12305					44	19	3	0	0	0	0.024457	1	11945	11945		29.15	0	1	204730	+		4364	20542	2585	2596	5776	5776					0.12080264045255262
ARVLVLCVFN	10	Unmodified	_ARVLVLCVFN_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3300170898438	2	567.328619	1132.64269	-0.57331	-0.00032526	2.7646	0.0015684	2.1912	0.0012432	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.0393	1	10939	10939		40.778	0	1	5699600			4365	1203	2586	2597	5777	5777					0.08166941767581193
ARVLVLCVFN	10	Unmodified	_ARVLVLCVFN_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3303833007812	2	567.328619	1132.64269	-0.10765	-6.1074E-05	2.1258	0.001206	2.0182	0.001145	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.118	1	11010	11010		30.318	1.1682	1	5896300			4366	1203	2586	2597	5778	5778					0.08166941767581193
ARVMYVRVL	9	Unmodified	_ARVMYVRVL_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8302612304688	2	553.828786	1105.64302	-0.19573	-0.0001084	2.3586	0.0013063	2.1629	0.0011979	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	0.70186	1	10659	10659		45.952	1.5748	1	1711900	+		4367	29019	2587	2598	5779	5779					0.09442361487435846
ARVPCGFAAM	10	Unmodified	_ARVPCGFAAM_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.78985595703125	2	511.749147	1021.48374	0.26138	0.00013376	-1.7023	-0.00087115	-1.4409	-0.00073739	511.74871664882687	85.781	0.72487	85.586	85.258	85.983	-0.19508					19	16	2	0	0	0	0.03519	1	10369	10369		21.96	0	1	56731			4368	3548	2588	2599	5780	5780					-0.026140951322076944
ARVQAQLPM	9	Unmodified	_ARVQAQLPM_					0	0	0			REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3191223144531	2	507.281669	1012.54878	-0.050229	-2.548E-05	-1.1635	-0.0005902	-1.2137	-0.00061568	507.7824384109665	52.458	0.93563	52.549	52.04	52.976	0.091938					41	23	2	0	0	0	0.024436	1	5614	5614		23.042	0	1	1546700	+		4369	22707	2589	2600	5781	5781					0.04301222665287696
ARVQRIQW	8	Unmodified	_ARVQRIQW_					0	0	0			REV__nc|ENSG00000126522|P04424-3|ASL	REV__nc|ENSG00000126522|P04424-3|ASL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7802124023438	2	528.8067	1055.59885	0.029902	1.5812E-05	-1.1075	-0.00058565	-1.0776	-0.00056984	528.8059831744439	49.833	0.60136	49.727	49.486	50.088	-0.10558					51	15	5	0	0	0	0.027866	1	5060	5060		47.916	2.8934	1	1178700	+		4370	22900	2590	2601	5782	5782					0.0732709338544737
ARVQVVATGG	10	Unmodified	_ARVQVVATGG_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27734375	2	479.277441	956.540328	0.51465	0.00024666	-0.27369	-0.00013117	0.24097	0.00011549	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	1.0616	1	10317	10317		37.812	2.1932	1	4752300	+		4371	21681	2591	2602	5783	5783					0.06031992020336929
ARVQVVATGG	10	Unmodified	_ARVQVVATGG_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2773742675781	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	1.1088	2	9985	9985;10262		31.53	3.6248	1	7774800	+		4372	21681	2591	2602	5784;5785	5784					0.06031992020336929
ARVQVVATGG	10	Unmodified	_ARVQVVATGG_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.277099609375	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	1.118	1	10038	10038		30.318	1.1682	1	7407200	+		4373	21681	2591	2602	5786	5786					0.06031992020336929
ARVRAARKHI	10	Unmodified	_ARVRAARKHI_					0	0	0		ENSG00000242259|ENST00000399562|C22orf39	ENSG00000242259|ENST00000399562|C22orf39	ENSG00000242259|ENST00000399562|C22orf39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.3432006835938	2	589.373072	1176.73159	0.73723	0.0004345	2.9458	0.0017362	3.683	0.0021707	589.3744825371228	92.744	0.54514	92.751	92.341	92.887	0.0077209					17	12	2	0	0	0	0.03519	1	11711	11711		26.693	0	1	45844			4374	10795	2592	2603	5787	5787					0.15029537842110585
ARVRARVEPL	10	Unmodified	_ARVRARVEPL_					0	0	0			REV__ENSG00000165171|ENST00000297873|METTL27	REV__ENSG00000165171|ENST00000297873|METTL27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.8587646484375	2	583.859464	1165.70437	0.62502	0.00036493	-1.6436	-0.00095962	-1.0186	-0.0005947	583.8583386779724	97.147	1.1257	97.011	96.613	97.738	-0.13671					80	24	4	0	0	0	1.1088	1	12045	12045		31.53	1.0262	1	1483900	+		4375	25848	2593	2604	5788	5788					0.12815009511086828
ARVRDVEL	8	Unmodified	_ARVRDVEL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2776184082031	2	479.277441	956.540328	0.21198	0.0001016	0.12251	5.8716E-05	0.33449	0.00016032	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	1.043	1	10316	10316		30.504	0	1	4888300			4376	6398	2594	2605	5789	5789					0.06031992020314192
ARVRLGPN	8	Unmodified	_ARVRLGPN_					0	0	0			REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF	REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7579345703125	2	441.767043	881.519533	-0.013674	-6.0405E-06	2.2425	0.00099067	2.2288	0.00098463	441.7684433269483	79.447	0.57653	79.466	79.192	79.768	0.018677					17	13	2	0	0	0	0.027866	1	9805	9805		12.207	4.5166	1	115170	+		4377	21229	2595	2606	5790	5790					0.07403446431317207
ARVRLGPN	8	Unmodified	_ARVRLGPN_					0	0	0			REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF	REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	441.767043	881.519533	-0.14452	-6.3844E-05	2.6211	0.0011579	2.4766	0.0010941	441.768379973532	79.516	0.54129	79.516	79.16	79.701	0	0.054976	1.217E-05	NaN	12.207	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87391	+		4378	21229	2595	2606							0.07403446431317207
ARVRLGPN	8	Unmodified	_ARVRLGPN_					0	0	0			REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF	REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.767043	881.519533	-0.89319	-0.00039458	2.8354	0.0012526	1.9422	0.00085802	441.76864949034194	79.574	0.71277	79.402	79.15	79.863	-0.17226	-0.059547	0.00020154	NaN	12.207	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73989	+		4379	21229	2595	2606							0.07403446431317207
ARVTATHAL	9	Unmodified	_ARVTATHAL_					0	0	0			REV__ENSG00000179023|ENST00000400664|KLHDC7A	REV__ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.27227783203125	2	470.272158	938.529764	-1.142	-0.00053707	1.1969	0.00056286	0.054838	2.5789E-05	470.27264567680317	91.314	1.5131	91.165	90.609	92.122	-0.1487					100	35	5	0	0	0	0.89441	1	11203	11203		32.812	8.2932	1	5837400	+		4380	27228	2596	2607	5791	5791					0.058040093658860314
ARVTRQLL	8	Unmodified	_ARVTRQLL_					0	0	0		sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.79296875	2	478.803626	955.592698	0.016195	7.7541E-06	-0.59207	-0.00028348	-0.57587	-0.00027573	478.8031630668927	53.825	0.098011	53.92	53.84	53.938	0.095669					4	2	2	0	0	0	0.027866	1	5771	5771		35.201	1.6851	1	174750			4381	37921	2597	2608	5792	5792					0.11312575153931448
ARVVFGKEI	9	Unmodified	_ARVVFGKEI_					0	0	0		ENST00000329073.8_1_12:132627816-132627993:-|nuORF	ENST00000329073.8_1_12:132627816-132627993:-|nuORF	ENST00000329073.8_1_12:132627816-132627993:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.80413818359375	2	509.805834	1017.59712	-0.39701	-0.0002024	-3.7604	-0.0019171	-4.1574	-0.0021195	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	0.87448	1	10867	10867		34.173	0.65696	1	3182000			4382	12315	2598	2609	5793	5793					0.08902039576844345
ARVVGSGHI	9	Unmodified	_ARVVGSGHI_					0	0	0			REV__ENST00000504768.2_1_5:93246475-93410459:-|nuORF	REV__ENST00000504768.2_1_5:93246475-93410459:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2579345703125	2	448.259051	894.503549	0.20384	9.1374E-05	0.11258	5.0463E-05	0.31642	0.00014184	448.259032001162	86.408	0.73396	86.363	86.033	86.767	-0.045097					31	16	3	0	0	0	0.89441	1	10825	10825		32.812	3.6629	1	482970	+		4383	22065	2599	2610	5794	5794					0.05207740194430244
ARVVHRQRR	9	Unmodified	_ARVVHRQRR_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.3431396484375	2	589.360496	1176.70644	-1.5787	-0.0009304	1.2265	0.00072284	-0.35217	-0.00020756	589.3600954731255	92.744	0.80751	92.744	92.454	93.261	0					20	18	2	0	0	0	0.024466	1	11818	11818		31.53	19.323	1	118560			4384	13139	2600	2611	5795	5795					0.12515483039555875
ARVVHRQRR	9	Unmodified	_ARVVHRQRR_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.3427734375	2	589.360496	1176.70644	0.55604	0.00032771	-1.7185	-0.0010128	-1.1625	-0.00068512	589.3592429276551	92.943	0.21076	92.951	92.887	93.097	0.0077286					5	4	2	0	0	0	0.024511	1	11736	11736		25.574	6.4705	1	41212			4385	13139	2600	2611	5796	5796					0.12515483039555875
ARVVHRQRR	9	Unmodified	_ARVVHRQRR_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3428955078125	2	589.360496	1176.70644	-0.75713	-0.00044622	2.9907	0.0017626	2.2336	0.0013164	589.3613886632645	93.07	0.26048	92.948	92.755	93.015	-0.12215					8	5	2	0	0	0	0.024477	1	11451	11451		27.882	8.7787	1	56727			4386	13139	2600	2611	5797	5797					0.12515483039555875
ARVVLQNN	8	Unmodified	_ARVVLQNN_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2644958496094	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.99042	3	10086	10086;10095;10131		38.806	5.6293	1	3048400	+		4387	21319	2601	2612	5798;5799;5800	5798					0.054357228488470355
ARVVLQNN	8	Unmodified	_ARVVLQNN_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2640075683594	2	457.264333	912.514114	0.19667	8.9932E-05	-0.16674	-7.6245E-05	0.029932	1.3687E-05	457.2641530854736	78.972	2.3995	78.741	77.586	79.985	-0.23141					139	56	5	0	0	0	1.0516	1	9419	9419		29.15	1.2673	1	1085400	+		4388	21319	2601	2612	5801	5801					0.054357228488470355
ARVVLQNN	8	Unmodified	_ARVVLQNN_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.26422119140625	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	1.0009	3	9658	9658;9862;9929		37.159	6.6555	1	4140300	+		4389	21319	2601	2612	5802;5803;5804	5802					0.054357228488470355
ARVVLQNN	8	Unmodified	_ARVVLQNN_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2642822265625	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0009	1	9727	9727		37.159	1.5408	1	3503800	+		4390	21319	2601	2612	5805	5805					0.054357228488470355
ARVVLSSAAR	10	Unmodified	_ARVVLSSAAR_					0	0	0		PMPCB|p.M408Ifs*6|1|0.15|ENSG00000105819|chr7:103311710-103311711|-/T|frameshift_variant;ENST00000498530.5_1_7:102937906-102949569:+|nuORF;ENSG00000105819|ENST00000249269|PMPCB	PMPCB|p.M408Ifs*6|1|0.15|ENSG00000105819|chr7:103311710-103311711|-/T|frameshift_variant	PMPCB|p.M408Ifs*6|1|0.15|ENSG00000105819|chr7:103311710-103311711|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3113403320312	2	515.311815	1028.60908	0.30122	0.00015522	-0.41688	-0.00021483	-0.11567	-5.9604E-05	515.3115093250659	17.868	0.73873	17.726	17.503	18.241	-0.14278					32	14	5	0	0	0	0.55353	1	203	203		82.241	2.7895	1	722620			4391	18977	2602	2613	5806	5806					0.09591656320026232
ARVVPGPMPLP	11	Unmodified	_ARVVPGPMPLP_					0	0	0			REV__ENSG00000147799|ENST00000377307|ARHGAP39	REV__ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3298950195312	2	567.328619	1132.64269	-0.48805	-0.00027688	2.2354	0.0012682	1.7474	0.00099135	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.018	1	11345	11345		32.812	1.2826	1	14972000	+		4392	24582	2603	2614	5807	5807					0.08166941767581193
ARVWLVLL	8	Unmodified	_ARVWLVLL_					0	0	0		ENSG00000146678|ENST00000275525|IGFBP1	ENSG00000146678|ENST00000275525|IGFBP1	ENSG00000146678|ENST00000275525|IGFBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.315838	968.617122	-1.0784	-0.00052335	-3.847	-0.001867	-4.9254	-0.0023904	485.31398015188483	40.346	1.4753	40.369	40.088	41.564	0.023006					108	41	5	0	0	0	0.75307	1	3472	3472		62.978	5.1671	1	29243000			4393	5900	2604	2615	5808	5808					0.13155835307463803
ARVWMVLS	8	Unmodified	_ARVWMVLS_					0	0	0		ENSG00000139835|ENST00000375431|GRTP1;nc|ENSG00000139835|Q5TC63-3|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.77850341796875	2	481.26803	960.521507	-0.84766	-0.00040795	-0.92105	-0.00044327	-1.7687	-0.00085122	481.26736461280984	55.993	0.50146	56.091	55.744	56.246	0.097897					22	13	2	0	0	0	0.027866	1	6161	6161		17.365	7.0997	1	148300			4394	5371	2605	2616	5809	5809					0.039667391249281536
ARVYPQRR	8	Unmodified	_ARVYPQRR_					0	0	0			REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.304324	1044.5941	0.50944	0.00026659	-2.1629	-0.0011319	-1.6535	-0.00086528	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	1.043	1	10464	10464		30.504	2.4222	1	3714800	+		4395	36032	2606	2617	5810	5810					0.07358209242693192
ARVYPQRR	8	Unmodified	_ARVYPQRR_					0	0	0			REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.304324	1044.5941	0.14525	7.6008E-05	-2.0005	-0.0010469	-1.8552	-0.00097085	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0009	1	10831	10831		37.159	4.3467	1	14210000	+		4396	36032	2606	2617	5811	5811					0.07358209242693192
ARWDRCQPM	9	Unmodified	_ARWDRCQPM_					0	0	0			REV__nc|ENSG00000037280|P35916-1|FLT4	REV__nc|ENSG00000037280|P35916-1|FLT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.3369140625	2	581.76586	1161.51717	-1.1228	-0.00065321	-0.86823	-0.00050511	-1.991	-0.0011583	581.765193217653	53.794	0.53823	53.647	53.383	53.921	-0.14723					23	14	2	0	0	0	0.024541	1	5849	5849		24.203	6.8378	1	354250	+		4397	20068	2607	2618	5812	5812					-0.05713093360327548
ARWFWDRRRRR	11	Unmodified	_ARWFWDRRRRR_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.89471435546875	4	415.984358	1659.90833	-0.82661	-0.00034386	0.30835	0.00012827	-0.51826	-0.00021559	416.2354799584571	29.84	0.42517	29.667	29.49	29.915	-0.17258					15	9	3	0	0	0	0.024904	1	1888	1888		0.31226	0.31226	1	33972	+		4398	30960	2608	2619	5813	5813					0.10476966725059356
ARWGVQKKV	9	Unmodified	_ARWGVQKKV_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-3|DENND3	REV__nc|ENSG00000105339|A2RUS2-3|DENND3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7994384765625	2	536.324725	1070.6349	-0.18608	-9.9798E-05	-0.25517	-0.00013685	-0.44124	-0.00023665	536.3248264084418	50.114	0.45225	49.933	49.681	50.133	-0.18071					23	11	3	0	0	0	0.024323	1	5058	5058		35.618	5.1146	1	769240	+		4399	36540	2609	2620	5814	5814					0.10240550562298267
ARWLHTPF	8	Unmodified	_ARWLHTPF_					0	0	0			REV__ENST00000491941.5_1_1:2523250-2524264:-|nuORF	REV__ENST00000491941.5_1_1:2523250-2524264:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8025512695312	2	514.277244	1026.53993	0.31913	0.00016412	0.80072	0.00041179	1.1198	0.00057591	514.2762541964406	59.74	0.62073	59.54	59.245	59.866	-0.20016					54	16	5	0	0	0	0.027866	1	6802	6802		35.201	18.728	1	834260	+		4400	32964	2610	2621	5815	5815					0.02772617091113716
ARYANYASS	9	Unmodified	_ARYANYASS_					0	0	0			REV__ENSG00000173662|ENST00000333172|TAS1R1	REV__ENSG00000173662|ENST00000333172|TAS1R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2699279785156	2	501.735606	1001.45666	-0.80638	-0.00040459	1.2186	0.00061142	0.41224	0.00020684	501.7360276378505	40.019	0.5367	39.789	39.546	40.083	-0.23021					33	13	3	0	0	0	0.024541	1	3382	3382		16.473	0	1	642630	+		4401	26795	2611	2622	5816	5816					-0.044011641473844065
ARYIPVPPL	9	Unmodified	_ARYIPVPPL_					0	0	0		ENST00000538930.5_1_16:57075247-57096263:+|nuORF	ENST00000538930.5_1_16:57075247-57096263:+|nuORF	ENST00000538930.5_1_16:57075247-57096263:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.7871704101562	2	513.310752	1024.60695	0.37022	0.00019004	-0.69453	-0.00035651	-0.32431	-0.00016647	513.3098348461729	71.241	0.57985	71.241	70.909	71.489	0					28	14	3	0	0	0	0.024357	1	8618	8618		44.531	0	1	353720			4402	16395	2612	2623	5817	5817					0.09563227582225409
ARYLHEPTL	9	Unmodified	_ARYLHEPTL_					0	0	0			REV__ENST00000592378.5_1_17:74475239-74483895:-|nuORF	REV__ENST00000592378.5_1_17:74475239-74483895:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.26904296875	2	550.298373	1098.58219	-0.60076	-0.00033059	-1.7859	-0.00098279	-2.3867	-0.0013134	550.8011546301174	65.095	0.43907	64.839	64.542	64.981	-0.25562					18	10	3	0	0	0	0.024466	1	7397	7397		39.253	5.0803	1	265570	+		4403	35746	2613	2624	5818	5818					0.03684547708849095
ARYYTEVI	8	Unmodified	_ARYYTEVI_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.76806640625	2	507.766374	1013.5182	-1.1368	-0.00057723	4.2416	0.0021538	3.1048	0.0015765	507.76832191894147	60.587	2.2409	60.666	59.863	62.104	0.078888					177	59	4	0	0	0	0.6248	1	6909	6909		73.975	10.668	1	6349000			4404	3495	2614	2625	5819	5819					0.01197767551900597
ASAARLLD	8	Unmodified	_ASAARLLD_					0	0	0			REV__ENST00000531848.1_1_11:18333558-18343679:-|nuORF	REV__ENST00000531848.1_1_11:18333558-18343679:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.88519287109375	2	408.732335	815.450116	1.7009	0.00069522	3.236	0.0013227	4.9369	0.0020179	408.73256736952584	23.463	0.59114	23.272	22.851	23.442	-0.19117					17	13	2	0	0	0	0.027866	1	883	883		15.642	5.3766	1	24121	+		4405	34565	2615	2626	5820	5820					0.03500942691914588
ASAARLLD	8	Unmodified	_ASAARLLD_					0	0	0			REV__ENST00000531848.1_1_11:18333558-18343679:-|nuORF	REV__ENST00000531848.1_1_11:18333558-18343679:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	408.732335	815.450116	0.50787	0.00020758	1.5491	0.00063315	2.0569	0.00084073	408.73365280412196	23.422	0.37708	23.22	23.061	23.438	-0.20193	-0.025938	-0.00074533	NaN	15.642	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24427	+		4406	34565	2615	2626							0.03500942691914588
ASAAVPAGAR	10	Unmodified	_ASAAVPAGAR_					0	0	0			REV__ENST00000591851.5_1_17:76047306-76073478:+|nuORF	REV__ENST00000591851.5_1_17:76047306-76073478:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.7439880371094	2	435.743234	869.471915	0.88385	0.00038513	-0.92904	-0.00040482	-0.045192	-1.9692E-05	435.74272029461696	33.135	0.54615	33.192	32.877	33.423	0.056572					40	14	3	0	0	0	0.91678	1	2348	2348		52.937	1.744	1	4722700	+		4407	20616	2616	2627	5821	5821					0.03195747440474861
ASADGTIKLW	10	Unmodified	_ASADGTIKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.28466796875	2	531.284931	1060.55531	-0.24622	-0.00013081	-1.0912	-0.00057975	-1.3374	-0.00071056	531.2842367103868	62.753	0.74624	62.532	62.276	63.022	-0.22097					50	20	3	0	0	0	0.00010942	2	7069	7069;7077		204.42	61.051	1	3794300			4408	9269	2617	2628	5822;5823	5822					0.02745439097657254
ASADGTIKLW	10	Unmodified	_ASADGTIKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2853393554688	2	531.284931	1060.55531	-1.0783	-0.00057287	-0.67494	-0.00035858	-1.7532	-0.00093145	531.2844362096941	62.681	0.77814	62.497	62.259	63.037	-0.18386					49	24	3	0	0	0	0.002678	2	7070	7070;7077		186.41	70.917	1	3001800			4409	9269	2617	2628	5824;5825	5824					0.02745439097657254
ASADGTIKLW	10	Unmodified	_ASADGTIKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2026070-2027324:+|nuORF	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2850952148438	2	531.284931	1060.55531	-0.31189	-0.0001657	-0.44602	-0.00023696	-0.75791	-0.00040267	531.2844915542607	62.851	0.71368	62.593	62.368	63.081	-0.25824					51	20	3	0	0	0	0.018089	2	7077	7067;7077		164.46	47.462	1	3332500			4410	9269	2617	2628	5826;5827	5827					0.02745439097657254
ASAGGAVG	8	Unmodified	_ASAGGAVG_					0	0	0			REV__ENST00000506530.5_1_4:1323389-1323932:+|nuORF	REV__ENST00000506530.5_1_4:1323389-1323932:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3431396484375	1	589.294016	588.28674	-1.2529	-0.00073831	2.7854	0.0016414	1.5325	0.0009031	589.297921129116	91.327	0.16732	91.203	91.076	91.243	-0.12341					5	3	2	0	0	0	0.027866	1	11200	11200		8.2313	0	1	18446	+		4411	34030	2618	2629	5828	5828					-0.02387235359128681
ASAGNLKPVW	10	Unmodified	_ASAGNLKPVW_					0	0	0		ENST00000599652.5_1_19:49973508-49973721:+|nuORF;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;FLT3LG-ALDH16A1|2|fusion;FLT3LG-ALDH16A1|1|fusion	ENST00000599652.5_1_19:49973508-49973721:+|nuORF	ENST00000599652.5_1_19:49973508-49973721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7877197265625	2	521.787641	1041.56073	-0.53162	-0.00027739	0.65323	0.00034085	0.12161	6.3455E-05	521.787714427914	52.581	0.94607	52.454	52.234	53.181	-0.12705					51	23	4	0	0	0	0.29487	3	5472	5462;5472;5484		109.48	39.851	1	3068400			4412	6883	2619	2630	5829;5830;5831	5830					0.04161162680134112
ASAGNLKPVW	10	Unmodified	_ASAGNLKPVW_					0	0	0		ENST00000599652.5_1_19:49973508-49973721:+|nuORF;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;FLT3LG-ALDH16A1|2|fusion;FLT3LG-ALDH16A1|1|fusion	ENST00000599652.5_1_19:49973508-49973721:+|nuORF	ENST00000599652.5_1_19:49973508-49973721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7880859375	2	521.787641	1041.56073	0.65686	0.00034274	-0.67324	-0.00035129	-0.016378	-8.5458E-06	521.787056483965	52.845	0.90091	52.587	52.249	53.15	-0.25838					46	21	3	0	0	0	0.24941	2	5501	5490;5501		114.89	40.64	1	2677200			4413	6883	2619	2630	5832;5833	5833					0.04161162680134112
ASAGNLKPVW	10	Unmodified	_ASAGNLKPVW_					0	0	0		ENST00000599652.5_1_19:49973508-49973721:+|nuORF;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;FLT3LG-ALDH16A1|2|fusion;FLT3LG-ALDH16A1|1|fusion	ENST00000599652.5_1_19:49973508-49973721:+|nuORF	ENST00000599652.5_1_19:49973508-49973721:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7876586914062	2	521.787641	1041.56073	0.049634	2.5899E-05	0.27087	0.00014134	0.3205	0.00016724	521.7873821257275	52.729	0.75129	52.539	52.267	53.019	-0.18982					49	18	4	0	0	0	0.29487	2	5490	5476;5490		109.48	44.013	1	2879200			4414	6883	2619	2630	5834;5835	5835					0.04161162680134112
ASAGRLTPE	9	Unmodified	_ASAGRLTPE_					0	0	0		nc|ENSG00000159082|O43426|SYNJ1;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7673645019531	2	451.240524	900.466495	-0.49802	-0.00022473	0.9349	0.00042186	0.43688	0.00019714	451.24065019102767	35.493	0.42678	35.307	35.061	35.488	-0.18675					21	10	3	0	0	0	0.024405	1	2655	2655		20.947	0	1	515040			4415	18418	2620	2631	5836	5836					0.012280238579819525
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.3115234375	2	529.311284	1056.60801	-0.45335	-0.00023996	-0.15114	-7.9998E-05	-0.60448	-0.00031996	529.3112671625572	60.768	1.1699	60.562	60.213	61.382	-0.20599					90	28	7	0	0	0	0.013094	4	6756	6756;6768;6779;6792		205.58	60.593	1	6680700			4416	1335	2621	2632	5837;5838;5839;5840	5837					0.08197441951142537
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.3111572265625	2	529.311284	1056.60801	-1.3057	-0.00069114	0.8651	0.00045791	-0.44064	-0.00023323	529.3116811285234	60.637	1.0484	60.461	60.156	61.205	-0.1761					68	25	4	0	0	0	0.01452	4	6768	6744;6756;6768;6781		201.49	63.913	1	6919000			4417	1335	2621	2632	5841;5842;5843;5844	5843					0.08197441951142537
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.3116455078125	2	529.311284	1056.60801	-0.74538	-0.00039454	0.28877	0.00015285	-0.45661	-0.00024169	529.3113767667058	60.84	1.134	60.586	60.253	61.387	-0.25373					78	27	4	0	0	0	0.013094	4	6762	6751;6762;6774;6787		186.09	61.265	1	6299100			4418	1335	2621	2632	5845;5846;5847;5848	5846					0.08197441951142537
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.311284	1056.60801	-0.95993	-0.0005081	-0.70527	-0.00037331	-1.6652	-0.00088141	529.8129834985754	60.353	0.32996	60.353	60.143	60.473	0	-0.21056	-0.0011484	NaN	186.09	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136010			4419	1335	2621	2632							0.08197441951142537
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.311284	1056.60801	-0.92698	-0.00049066	0.23536	0.00012458	-0.69162	-0.00036608	529.3112403283764	60.916	0.67723	60.703	60.196	60.873	-0.21339	0.13978	-0.00015259	NaN	186.09	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178950			4420	1335	2621	2632							0.08197441951142537
ASAIIIQRW	9	Unmodified	_ASAIIIQRW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.311284	1056.60801	-1.3625	-0.00072116	0.25502	0.00013498	-1.1074	-0.00058618	529.311496154723	60.636	0.30233	60.715	60.536	60.839	0.078884	0.15154	-0.00013178	NaN	186.09	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203970			4421	1335	2621	2632							0.08197441951142537
ASALAAEGGR	10	Unmodified	_ASALAAEGGR_					0	0	0			REV__nc|ENSG00000233220|Q96N53|PRDM10-DT	REV__nc|ENSG00000233220|Q96N53|PRDM10-DT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.9163513183594	2	451.738148	901.461744	-0.26564	-0.00012	-0.89887	-0.00040606	-1.1645	-0.00052606	451.73727776842924	24.761	0.98829	24.761	24.297	25.285	0					38	22	3	0	0	0	0.03519	1	1053	1053		21.686	3.3613	1	330430	+		4422	37149	2622	2633	5849	5849					0.007071397152344616
ASALALNSVTV	11	Unmodified	_ASALALNSVTV_					0	0	0		ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2971801757812	2	523.298039	1044.58152	-0.5436	-0.00028447	-1.1571	-0.0006055	-1.7007	-0.00088997	523.2976128933077	51.764	1.6523	51.764	51.212	52.864	0					140	44	5	0	0	0	0.014124	4	5498	5464;5474;5486;5498		134.77	28.197	1	26642000			4423	14622	2623	2634	5850;5851;5852;5853	5853					0.061017082691250835
ASALALNSVTV	11	Unmodified	_ASALALNSVTV_					0	0	0		ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.296630859375	2	523.298039	1044.58152	-0.62686	-0.00032804	-1.0592	-0.00055425	-1.686	-0.00088229	523.2975835347956	52.011	1.7959	51.863	51.336	53.132	-0.14735					115	48	4	0	0	0	0.054856	4	5486	5463;5475;5486;5498		120.31	32.129	1	24060000			4424	14622	2623	2634	5854;5855;5856;5857	5856					0.061017082691250835
ASALALNSVTV	11	Unmodified	_ASALALNSVTV_					0	0	0		ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2967529296875	2	523.298039	1044.58152	-0.98948	-0.00051779	-1.0491	-0.00054898	-2.0386	-0.0010668	523.29775160659	51.773	1.8883	51.86	51.264	53.152	0.087006					123	50	4	0	0	0	0.064447	4	5399	5377;5387;5399;5411		117.53	18.896	1	22616000			4425	14622	2623	2634	5858;5859;5860;5861	5860					0.061017082691250835
ASAPAPASASA	11	Unmodified	_ASAPAPASASA_					0	0	0			REV__nc|ENSG00000135916|Q9NQX7-2|ITM2C	REV__nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2743225097656	2	450.724707	899.43486	0.40043	0.00018049	-3.7776	-0.0017026	-3.3771	-0.0015222	450.7226477640628	92.203	0.38406	92.213	91.999	92.383	0.0094147					12	9	2	0	0	0	0.024756	1	11590	11590		36.447	12.924	1	59520	+		4426	23596	2624	2635	5862	5862					-0.01887968895960057
ASAVAPRKP	9	Unmodified	_ASAVAPRKP_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2607116699219	2	448.769252	895.52395	-0.086825	-3.8964E-05	1.1391	0.00051121	1.0523	0.00047224	448.7690494147656	31.325	0.81536	31.084	30.834	31.649	-0.24109					34	20	4	0	0	0	0.024477	1	2078	2078		14.865	0	1	273010	+		4427	20132	2625	2636	5863	5863					0.07200910854226095
ASDAQLNSQ	9	Unmodified	_ASDAQLNSQ_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.26318359375	2	467.217246	932.419939	0.27926	0.00013047	-3.8101	-0.0017802	-3.5309	-0.0016497	467.21477322477307	50.656	0.18405	50.544	50.379	50.563	-0.11163					6	4	2	0	0	0	0.024495	1	5140	5140		34.173	5.023	1	113800			4428	5810	2626	2637	5864	5864					-0.048974607639365786
ASDEFLKERVI	11	Unmodified	_ASDEFLKERVI_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7640686035156	3	436.238232	1305.69287	0.05904	2.5755E-05	-0.086234	-3.7618E-05	-0.027194	-1.1863E-05	436.57236746231507	27.283	0.88973	27.126	26.544	27.434	-0.15664					35	20	2	0	0	0	0.024789	1	1415	1415		58.63	18.571	1	96925			4429	5390	2627	2638	5865	5865					0.05224722906405077
ASDFITKMDY	10	Unmodified	_ASDFITKMDY_					0	0	0		ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN	ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENST00000373807.5_1_9:124074589-124093809:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.7732543945312	2	595.773539	1189.53253	0.69094	0.00041164	-0.98532	-0.00058703	-0.29438	-0.00017538	595.772942455923	59.752	0.69063	59.554	59.256	59.947	-0.19742					41	17	4	0	0	0	0.0074023	1	6615	6615		173.39	85.638	1	2381000			4430	6007	2628	2639	5866	5866					-0.05465948082132854
ASDFITKMDY	10	Unmodified	_ASDFITKMDY_					0	0	0		ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN	ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENST00000373807.5_1_9:124074589-124093809:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.7724609375	2	595.773539	1189.53253	-0.012999	-7.7447E-06	-0.32844	-0.00019568	-0.34144	-0.00020342	595.7733420564911	59.593	0.61374	59.417	59.199	59.813	-0.1761					33	15	3	0	0	0	0.0055314	2	6596	6596;6608		178.55	101.77	1	2369600			4431	6007	2628	2639	5867;5868	5867					-0.05465948082132854
ASDFITKMDY	10	Unmodified	_ASDFITKMDY_					0	0	0		ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN	ENST00000373807.5_1_9:124074589-124093809:+|nuORF	ENST00000373807.5_1_9:124074589-124093809:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.7731323242188	2	595.773539	1189.53253	-0.3133	-0.00018666	-0.027793	-1.6559E-05	-0.3411	-0.00020322	595.7734540654753	59.783	0.65663	59.534	59.252	59.909	-0.24842					38	16	3	0	0	0	0.047364	1	6603	6603		148.69	71.916	1	2176700			4432	6007	2628	2639	5869	5869					-0.05465948082132854
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(120)LQLEY	0	0	1		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.Y145N|1|0.47|ENSG00000165572|chr13:41132079-41132079|A/T|missense_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2442016601562	2	543.244615	1084.47468	-0.6882	-0.00037386	0.83489	0.00045355	0.1467	7.9691E-05	543.2448023800819	64.541	1.15	64.306	63.902	65.052	-0.2345					77	28	4	0	0	0	0.077175	3	7323	7312;7323;7335		118.74	18.365	1	3508700			4433	17782;3831	2629	2640	5870;5871;5872	5871		147			-0.06418210007564085
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(110)LQLEY	0	0	1		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.Y145N|1|0.47|ENSG00000165572|chr13:41132079-41132079|A/T|missense_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2443237304688	2	543.244615	1084.47468	-0.50404	-0.00027382	0.60962	0.00033117	0.10558	5.7355E-05	543.244680032583	64.468	1.3555	64.266	63.871	65.226	-0.20254					82	33	4	0	0	0	0.091713	4	7333	7322;7333;7345;7367		113.41	19.405	1	3944100			4434	17782;3831	2629	2640	5873;5874;5875;5876	5874		147			-0.06418210007564085
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(110)LQLEY	0	0	1		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.Y145N|1|0.47|ENSG00000165572|chr13:41132079-41132079|A/T|missense_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2442626953125	2	543.244615	1084.47468	-1.1862	-0.0006444	1.5783	0.00085739	0.39208	0.000213	543.2450242017795	64.739	1.9254	64.484	63.836	65.761	-0.25562					104	47	4	0	0	0	0.10174	2	7324	7312;7324		110.12	9.9865	1	4066500			4435	17782;3831	2629	2640	5877;5878	5878		147			-0.06418210007564085
ASDMLQLEY	9	Oxidation (M)	_ASDM(Oxidation (M))LQLEY_		ASDM(1)LQLEY		ASDM(90)LQLEY	0	0	1		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.Y145N|1|0.47|ENSG00000165572|chr13:41132079-41132079|A/T|missense_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2435302734375	2	543.244615	1084.47468	-0.93321	-0.00050696	3.0823	0.0016745	2.1491	0.0011675	543.2449757333122	67.185	3.5011	66.947	66.571	70.072	-0.23814					162	87	3	0	0	0	0.19099	2	7754	7754;7766		90.37	10.919	1	2397200			4436	17782;3831	2629	2640	5879;5880	5879		147			-0.06418210007564085
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.Y145N|1|0.47|ENSG00000165572|chr13:41132079-41132079|A/T|missense_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2472534179688	2	535.247157	1068.47976	-0.41266	-0.00022088	0.019885	1.0643E-05	-0.39278	-0.00021023	535.2470666682681	73.584	1.0112	73.307	72.713	73.724	-0.2769					65	24	4	0	0	0	0.015901	5	8649	8625;8637;8649;8661;8675		157.33	50.914	1	11446000			4437	17782;3831	2629	2641	5881;5882;5883;5884;5885	5883					-0.05173906144932516
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.Y145N|1|0.47|ENSG00000165572|chr13:41132079-41132079|A/T|missense_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.2470092773438	2	535.247157	1068.47976	-0.77863	-0.00041676	0.37889	0.0002028	-0.39974	-0.00021396	535.2472657482299	73.541	0.92003	73.276	72.767	73.687	-0.26479					65	22	4	0	0	0	0.016542	5	8645	8636;8645;8657;8671;8683		154.12	59.029	1	10660000			4438	17782;3831	2629	2641	5886;5887;5888;5889;5890	5887					-0.05173906144932516
ASDMLQLEY	9	Unmodified	_ASDMLQLEY_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;KBTBD6|p.Y145N|1|0.47|ENSG00000165572|chr13:41132079-41132079|A/T|missense_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2470703125	2	535.247157	1068.47976	-0.79455	-0.00042528	0.41154	0.00022027	-0.38302	-0.00020501	535.2472620834986	73.364	1.0531	73.174	72.59	73.643	-0.19026					77	25	4	0	0	0	0.013333	5	8607	8597;8607;8619;8631;8645		176.41	56.854	1	10727000			4439	17782;3831	2629	2641	5891;5892;5893;5894;5895	5892					-0.05173906144932516
ASDSIVLFY	9	Unmodified	_ASDSIVLFY_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7613525390625	2	507.760758	1013.50696	0.51434	0.00026116	-0.35509	-0.0001803	0.15925	8.0862E-05	507.76042255479723	84.559	0.92471	84.355	83.994	84.919	-0.20329					69	21	5	0	0	0	0.20304	3	10221	10209;10221;10233		88.643	18.46	1	2265200			4440	1845	2630	2642	5896;5897;5898	5897					0.0007494545775443839
ASDSIVLFY	9	Unmodified	_ASDSIVLFY_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7607421875	2	507.760758	1013.50696	0.57891	0.00029395	-0.57338	-0.00029114	0.0055357	2.8108E-06	507.76033278359915	84.465	1.0895	84.306	83.932	85.021	-0.15869					75	25	4	0	0	0	0.24299	3	10216	10216;10228;10240		83.287	23.218	1	2904900			4441	1845	2630	2642	5899;5900;5901	5899					0.0007494545775443839
ASDSIVLFY	9	Unmodified	_ASDSIVLFY_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7608642578125	2	507.760758	1013.50696	0.33382	0.0001695	-0.49302	-0.00025034	-0.1592	-8.0836E-05	507.76040448849113	84.482	1.0991	84.344	83.889	84.988	-0.13789					78	25	5	0	0	0	0.12366	3	10197	10197;10207;10221		105.27	22.964	1	3494100			4442	1845	2630	2642	5902;5903;5904	5902					0.0007494545775443839
ASDYFDQLY	9	Unmodified	_ASDYFDQLY_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2442626953125	2	561.242929	1120.47131	-0.46871	-0.00026306	0.52946	0.00029716	0.060747	3.4094E-05	561.243099521437	76.15	0.92241	75.877	75.582	76.505	-0.27266					60	22	4	0	0	0	0.53979	1	9029	9029		56.721	12.604	1	1222500			4443	8235	2631	2643	5905	5905					-0.08411136789891316
ASEDSVLLY	9	Unmodified	_ASEDSVLLY_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B;ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7480773925781	2	498.747847	995.481142	0.66252	0.00033043	-0.65846	-0.0003284	0.0040629	2.0264E-06	498.7473918401215	68.096	0.93447	67.841	67.538	68.472	-0.25516					58	22	4	0	0	0	0.52323	1	7842	7842		57.811	0.35863	1	3351800			4444	6733;15228	2632	2644	5906	5906					-0.016779487845155927
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.74853515625	2	553.748713	1105.48287	-0.24614	-0.0001363	0.13694	7.5831E-05	-0.1092	-6.047E-05	553.7486529856726	43.253	0.80219	43.141	42.891	43.693	-0.11253					63	21	4	0	0	0	0.50091	1	3949	3949		88.177	13.922	1	3112500			4445	18419	2633	2645	5907	5907					-0.06564894975895186
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7484130859375	2	553.748713	1105.48287	-0.97073	-0.00053754	0.55074	0.00030497	-0.42	-0.00023257	553.7488830816218	43.495	0.97826	43.269	42.951	43.929	-0.22597					69	26	4	0	0	0	0.83673	1	3985	3985		58.23	14.113	1	3420100			4446	18419	2633	2645	5908	5908					-0.06564894975895186
ASEFPGAQHY	10	Unmodified	_ASEFPGAQHY_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000566509.5_1_15:73052730-73067416:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.748713	1105.48287	-0.59997	-0.00033223	0.29821	0.00016514	-0.30176	-0.0001671	553.748771251422	43.451	0.76159	43.214	42.917	43.679	-0.23736	0.0056986	-2.9321E-05	NaN	88.177	62	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3156300			4447	18419	2633	2645							-0.06564894975895186
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2609558105469	2	476.260925	950.507297	0.46761	0.0002227	-0.17777	-8.4666E-05	0.28984	0.00013804	476.2607475544289	50.173	1.2296	50.068	49.562	50.792	-0.10558					65	32	4	0	0	0	0.062622	3	5080	5080;5093;5107		124.08	57.651	1	3997300			4448	8611	2634	2646	5909;5910;5911	5909					0.030063651776117695
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2607727050781	2	476.260925	950.507297	0.12268	5.843E-05	0.10211	4.8631E-05	0.22479	0.00010706	476.2608434986277	50.441	1.0121	50.161	49.875	50.887	-0.27977					57	26	4	0	0	0	0.094442	3	5118	5106;5118;5129		112.41	45.982	1	4105300			4449	8611	2634	2646	5912;5913;5914	5913					0.030063651776117695
ASELKALGY	9	Unmodified	_ASELKALGY_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.260986328125	2	476.260925	950.507297	0.35263	0.00016794	-0.14285	-6.8035E-05	0.20977	9.9907E-05	476.2607636928989	50.292	0.82148	50.111	49.826	50.647	-0.18071					53	21	4	0	0	0	0.062622	3	5089	5089;5098;5113		124.08	54.452	1	4008100			4450	8611	2634	2646	5915;5916;5917	5915					0.030063651776117695
ASERGVRLSL	10	Unmodified	_ASERGVRLSL_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.314453125	2	544.314554	1086.61456	-0.62675	-0.00034115	0.36955	0.00020115	-0.25721	-0.00014	544.3146867306606	42.33	0.84772	42.099	41.837	42.684	-0.23186					55	22	4	0	0	0	1.0393	1	3810	3810		40.778	0	1	2930500			4451	2934	2635	2647	5918	5918					0.07471335111858934
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.D303G|1|0.66|ENSG00000227057|chr6:33287198-33287198|T/C|missense_variant	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7344970703125	2	494.73474	987.454927	0.16113	7.9718E-05	0.11367	5.6239E-05	0.27481	0.00013596	494.73468461659263	67.846	0.81554	67.612	67.303	68.119	-0.23376					55	19	4	0	0	0	0.62163	1	7823	7823		51.335	5.3835	1	1818100			4452	10668	2636	2648	5919	5919					-0.03930217956008164
ASETGFLTY	9	Unmodified	_ASETGFLTY_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF;WDR46|p.D303G|1|0.66|ENSG00000227057|chr6:33287198-33287198|T/C|missense_variant	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.73468017578125	2	494.73474	987.454927	-0.025058	-1.2397E-05	0.27804	0.00013755	0.25298	0.00012516	494.7347339992219	67.814	0.78055	67.576	67.289	68.07	-0.23814					50	18	4	0	0	0	0.4752	1	7813	7813		60.972	4.2509	1	2273500			4453	10668	2636	2648	5920	5920					-0.03930217956008164
ASFCNVYLEW	10	Unmodified	_ASFCNVYLEW_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;DHCR24-PCNXL2|1|fusion;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.2135314941406	3	411.186592	1230.53795	-0.63016	-0.00025911	0.19972	8.2123E-05	-0.43044	-0.00017699	411.18634531285255	44.588	0.26002	44.343	44.256	44.516	-0.2444					9	6	2	0	0	0	0.03519	1	4170	4170		40.058	9.4893	1	69061			4454	4927	2637	2649	5921	5921					-0.06810224499645301
ASFDGRISV	9	Unmodified	_ASFDGRISV_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.2491760253906	2	476.248349	950.482145	1.1011	0.00052439	-1.4176	-0.00067512	-0.31649	-0.00015073	476.24752902005156	51.487	0.6941	51.487	51.212	51.906	0					43	19	3	0	0	0	0.33603	1	5471	5471		70.816	2.0294	1	1898200			4455	5266;17915	2638	2650	5922	5922					0.004923103750456903
ASFDGRISV	9	Unmodified	_ASFDGRISV_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	476.248349	950.482145	-0.21111	-0.00010054	-0.11892	-5.6637E-05	-0.33003	-0.00015718	476.248102737831	51.645	0.65362	51.497	51.193	51.846	-0.14735	0.013554	0.00029992	NaN	70.816	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2166900			4456	5266;17915	2638	2650							0.004923103750456903
ASFDGRISV	9	Unmodified	_ASFDGRISV_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.248349	950.482145	-0.7535	-0.00035886	0.38503	0.00018337	-0.36847	-0.00017548	476.2483377687503	51.38	0.66479	51.467	51.153	51.818	0.087006	-0.016472	0.00077994	NaN	70.816	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1832800			4457	5266;17915	2638	2650							0.004923103750456903
ASFDSTVRLW	10	Unmodified	_ASFDSTVRLW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	591.3005981445312	2	591.301113	1180.58767	-0.40273	-0.00023814	0.48841	0.0002888	0.085679	5.0662E-05	591.3010700731893	71.067	0.70521	70.795	70.571	71.276	-0.27185					30	15	3	0	0	0	0.47897	1	8292	8292		90.601	35.825	1	552710			4458	2353	2639	2651	5923	5923					0.004602265006724338
ASFDSTVRLW	10	Unmodified	_ASFDSTVRLW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	591.3010864257812	2	591.301113	1180.58767	-0.80375	-0.00047526	0.54623	0.00032299	-0.25752	-0.00015227	591.3013360491001	70.988	0.59395	70.73	70.528	71.122	-0.25713					29	13	3	0	0	0	0.56936	1	8293	8293		80.455	27.518	1	632090			4459	2353	2639	2651	5924	5924					0.004602265006724338
ASFDSTVRLW	10	Unmodified	_ASFDSTVRLW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	591.301113	1180.58767	-0.02985	-1.765E-05	-0.29626	-0.00017518	-0.32611	-0.00019283	591.3006957163917	70.912	0.55884	70.698	70.484	71.043	-0.21424	-0.043338	-0.00062959	NaN	90.601	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621600			4460	2353	2639	2651							0.004602265006724338
ASFLKLPISGT	11	Unmodified	_ASFLKLPISGT_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000144136|ENST00000272542|SLC20A1	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3299560546875	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0344	1	11322	11322		29.17	1.0886	1	4116000			4461	5718	2640	2652	5925	5925					0.08819158199935373
ASFLKLPISGT	11	Unmodified	_ASFLKLPISGT_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000144136|ENST00000272542|SLC20A1	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3303833007812	2	567.331882	1132.64921	0.14889	8.447E-05	-3.8286	-0.0021721	-3.6797	-0.0020876	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.0183	1	10981	10981		32.751	1.2207	1	5699400			4462	5718	2640	2652	5926	5926					0.08819158199935373
ASGGTRNH	8	Unmodified	_ASGGTRNH_					0	0	0			REV__CON__P15636	REV__CON__P15636	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.1970520019531	2	400.193908	798.373263	1.3624	0.00054521	3.3155	0.0013268	4.6778	0.001872	400.19566925186354	83.823	1.1063	83.611	83.221	84.327	-0.21159					67	25	4	0	0	0	0.93274	1	10144	10144		47.916	1.9636	1	3795100	+	+	4463	19553	2641	2653	5927	5927					-0.03398855804573486
ASGGTRNH	8	Unmodified	_ASGGTRNH_					0	0	0			REV__CON__P15636	REV__CON__P15636	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.1961669921875	2	400.193908	798.373263	-0.36218	-0.00014494	1.0806	0.00043243	0.71838	0.00028749	400.1941234050417	80.162	1.196	80.016	79.701	80.897	-0.146					62	28	3	0	0	0	0.97924	2	9607	9607;9646		40.573	3.4135	1	1977600	+	+	4464	19553	2641	2653	5928;5929	5928					-0.03398855804573486
ASHFKHTEL	9	Unmodified	_ASHFKHTEL_					0	0	0		nc|ENSG00000130856|Q9UL36-2|ZNF236;nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36-2|ZNF236	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2723388671875	2	535.274898	1068.53524	-0.0028243	-1.5118E-06	-3.4615	-0.0018529	-3.4643	-0.0018544	535.2726926233761	103.99	0.90221	103.86	103.23	104.14	-0.12561					34	22	3	0	0	0	0.89441	1	12938	12938		32.812	1.2826	1	206170			4465	4470	2642	2654	5930	5930					0.0037168815770201036
ASHPTNQVGR	10	Unmodified	_ASHPTNQVGR_					0	0	0			REV__ENST00000409419.5_1_19:40854624-40872398:+|nuORF	REV__ENST00000409419.5_1_19:40854624-40872398:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7744750976562	2	533.773054	1065.53155	-0.53891	-0.00028766	2.8733	0.0015337	2.3344	0.0012461	533.7745057007689	50.856	1.1847	50.707	50.39	51.575	-0.14916					94	33	4	0	0	0	0.59716	1	5345	5345		77.318	7.69	1	12060000	+		4466	31959	2643	2655	5931	5931					0.0014101838385158771
ASHPTNQVGR	10	Unmodified	_ASHPTNQVGR_					0	0	0			REV__ENST00000409419.5_1_19:40854624-40872398:+|nuORF	REV__ENST00000409419.5_1_19:40854624-40872398:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7741088867188	2	533.773054	1065.53155	-0.64929	-0.00034657	3.0927	0.0016508	2.4434	0.0013042	533.7746059894222	50.512	1.3612	50.593	50.243	51.604	0.08099					106	38	4	0	0	0	0.80817	1	5250	5250		60.118	0.18749	1	11721000	+		4467	31959	2643	2655	5932	5932					0.0014101838385158771
ASIKLWDV	8	Unmodified	_ASIKLWDV_					0	0	0		ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000172354|P62879-2|GNB2;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant	ENSG00000172354|ENST00000303210|GNB2	ENSG00000172354|ENST00000303210|GNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.2658996582031	2	466.26601	930.517468	0.39339	0.00018342	-0.30742	-0.00014334	0.085974	4.0087E-05	466.26572209628915	65.662	0.59244	65.662	65.358	65.95	0					47	15	4	0	0	0	0.22528	2	7802	7789;7802		136.27	22.857	1	3179200			4468	8266	2644	2656	5933;5934	5934					0.04942972902847487
ASIKLWDV	8	Unmodified	_ASIKLWDV_					0	0	0		ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000172354|P62879-2|GNB2;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant	ENSG00000172354|ENST00000303210|GNB2	ENSG00000172354|ENST00000303210|GNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.26593017578125	2	466.26601	930.517468	0.13373	6.2356E-05	-0.035458	-1.6533E-05	0.098276	4.5823E-05	466.26584404419424	65.938	0.52119	65.665	65.43	65.951	-0.27283					46	13	4	0	0	0	0.27172	2	7814	7814;7827		124.08	33.71	1	2677800			4469	8266	2644	2656	5935;5936	5935					0.04942972902847487
ASIKLWDV	8	Unmodified	_ASIKLWDV_					0	0	0		ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000172354|P62879-2|GNB2;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant	ENSG00000172354|ENST00000303210|GNB2	ENSG00000172354|ENST00000303210|GNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.26507568359375	2	466.26601	930.517468	0.71494	0.00033335	-0.53507	-0.00024948	0.17987	8.3869E-05	466.26560192475466	65.686	0.59082	65.724	65.422	66.013	0.037384					44	15	4	0	0	0	0.37096	3	7711	7711;7724;7736		101.25	10.906	1	3089800			4470	8266	2644	2656	5937;5938;5939	5937					0.04942972902847487
ASIVEGLIK	9	Unmodified	_ASIVEGLIK_					0	0	0			REV__nc|ENSG00000163110|Q96HC4-7|PDLIM5	REV__nc|ENSG00000163110|Q96HC4-7|PDLIM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2876892089844	2	465.286943	928.559333	-0.28781	-0.00013391	-0.28801	-0.00013401	-0.57582	-0.00026792	465.28695700621563	75.528	1.9587	75.284	74.878	76.837	-0.24454					166	50	5	0	0	0	0.12602	1	9281	9281		104.75	0.68976	1	108540000	+		4471	25534	2645	2657	5940	5940					0.09219528591381732
ASKKKKEKFVF	11	Unmodified	_ASKKKKEKFVF_					0	0	0			REV__ENSG00000112308|ENST00000378119|C6orf62	REV__ENSG00000112308|ENST00000378119|C6orf62	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.2733459472656	3	447.274729	1338.80236	0.11818	5.2859E-05	-4.1115	-0.001839	-3.9933	-0.0017861	447.27278940417534	106.28	1.1364	106.16	105.64	106.77	-0.1238					111	43	5	0	0	0	1.0788	1	13227	13227		17.167	0.63689	1	2232400	+		4472	21992	2646	2658	5941	5941					0.14650773316384402
ASKPAVEI	8	Unmodified	_ASKPAVEI_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;CRABP2|p.E47V|1|0.39|ENSG00000143320|chr1:156700983-156700983|T/A|missense_variant	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.7371826171875	2	407.737086	813.459619	0.2016	8.2199E-05	0.13712	5.5909E-05	0.33872	0.00013811	407.73699534042197	37.686	0.7985	37.495	37.192	37.99	-0.19128					55	21	4	0	0	0	0.29644	3	3038	3038;3048;3062		113.41	10.824	1	2355200			4473	5632	2647	2659	5942;5943;5944	5942					0.04542710977432307
ASKPAVEI	8	Unmodified	_ASKPAVEI_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;CRABP2|p.E47V|1|0.39|ENSG00000143320|chr1:156700983-156700983|T/A|missense_variant	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.7371826171875	2	407.737086	813.459619	-0.46558	-0.00018983	0.59596	0.00024299	0.13038	5.316E-05	407.7372661801857	37.733	0.76085	37.513	37.231	37.992	-0.2195					52	20	4	0	0	0	0.27613	3	3041	3041;3054;3066		122.18	22.635	1	2236000			4474	5632	2647	2659	5945;5946;5947	5945					0.04542710977432307
ASKPAVEI	8	Unmodified	_ASKPAVEI_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;CRABP2|p.E47V|1|0.39|ENSG00000143320|chr1:156700983-156700983|T/A|missense_variant	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	407.7374267578125	2	407.737086	813.459619	-1.1524	-0.00046989	1.2155	0.00049561	0.063076	2.5719E-05	407.73753995228356	37.745	0.77433	37.527	37.183	37.957	-0.21849					52	20	3	0	0	0	0.27613	2	3035	3035;3049		122.18	10.528	1	2139200			4475	5632	2647	2659	5948;5949	5948					0.04542710977432307
ASKQRQIL	8	Unmodified	_ASKQRQIL_					0	0	0			REV__ENSG00000171695|ENST00000302096|LKAAEAR1	REV__ENSG00000171695|ENST00000302096|LKAAEAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2878723144531	2	472.287808	942.561064	-0.32971	-0.00015572	-0.19839	-9.3697E-05	-0.5281	-0.00024942	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	1.0106	1	11646	11646		35.618	1.4457	1	42351000	+		4476	26590	2648	2660	5950	5950					0.08748582400005489
ASKVTEQEW	9	Unmodified	_ASKVTEQEW_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2672729492188	2	539.264196	1076.51384	-0.50318	-0.00027135	0.020848	1.1243E-05	-0.48233	-0.0002601	539.2640636428655	37.784	0.55273	37.604	37.323	37.876	-0.17929					44	14	4	0	0	0	0.12748	1	3074	3074		104.42	24.973	1	1745700			4477	8558	2649	2661	5951	5951					-0.021357416616638147
ASLGMILLW	9	Oxidation (M)	_ASLGM(Oxidation (M))ILLW_		ASLGM(1)ILLW		ASLGM(68)ILLW	0	0	1		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2817687988281	2	510.283346	1018.55214	0.92381	0.0004714	-2.3172	-0.0011824	-1.3934	-0.00071104	510.28211282943005	97.733	1.0552	97.609	96.973	98.029	-0.12368					46	24	3	0	0	0	0.36105	1	12106	12106		68.485	6.3773	1	228590			4478	8534	2650	2662	5952	5952		357			0.04360472719304198
ASLGPHRPHHL	11	Unmodified	_ASLGPHRPHHL_					0	0	0		ENST00000588134.1_1_18:53447116-53447923:-|nuORF	ENST00000588134.1_1_18:53447116-53447923:-|nuORF	ENST00000588134.1_1_18:53447116-53447923:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	611.3562622070312	2	611.333613	1220.65267	-1.5032	-0.00091894	-2.4962	-0.001526	-3.9994	-0.0024449	611.3315226855063	94.369	0.65192	94.375	94.011	94.663	0.0059814					20	15	2	0	0	0	0.024741	1	11956	11956		37.812	8.6415	1	143650			4479	17282	2651	2663	5953	5953					0.051172658171935836
ASLKWVSL	8	Unmodified	_ASLKWVSL_					0	0	0			REV__ENST00000344423.9_1_8:28205359-28205527:-|nuORF	REV__ENST00000344423.9_1_8:28205359-28205527:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.266845703125	2	452.268553	902.522553	-0.35534	-0.00016071	-4.1744	-0.0018879	-4.5297	-0.0020486	452.26655709903486	25.558	0.87168	25.331	25.018	25.89	-0.22683					32	20	2	0	0	0	0.44658	2	1230	1218;1230		90.777	18.899	1	1840100	+		4480	30683	2652	2664	5954;5955	5955					0.06739276765483737
ASLKWVSL	8	Unmodified	_ASLKWVSL_					0	0	0			REV__ENST00000344423.9_1_8:28205359-28205527:-|nuORF	REV__ENST00000344423.9_1_8:28205359-28205527:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	452.268553	902.522553	-0.35534	-0.00016071	-4.1744	-0.0018879	-4.5297	-0.0020486	452.26655709903486	25.558	0.87168	25.331	25.018	25.89	-0.22683	0.095412	0.00025598	NaN	90.777	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1840100	+		4481	30683	2652	2664							0.06739276765483737
ASLKWVSL	8	Unmodified	_ASLKWVSL_					0	0	0			REV__ENST00000344423.9_1_8:28205359-28205527:-|nuORF	REV__ENST00000344423.9_1_8:28205359-28205527:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	452.268553	902.522553	0.26351	0.00011918	-4.91	-0.0022207	-4.6465	-0.0021015	452.2662358527644	25.392	0.71609	25.22	24.95	25.666	-0.17151	-0.015024	-0.00040944	NaN	90.777	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1689500	+		4482	30683	2652	2664							0.06739276765483737
ASLLLPLVG	9	Unmodified	_ASLLLPLVG_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7880554199219	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	0.98128	1	3641	3641		24.203	4.8428	1	39693000	+		4483	20649	2653	2665	5956	5956					0.11308733942325944
ASLLVRSH	8	Unmodified	_ASLLVRSH_					0	0	0			REV__nc|ENSG00000153707|P23468-7|PTPRD;REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7880859375	2	441.761426	881.5083	-0.50627	-0.00022365	0.69454	0.00030682	0.18827	8.3172E-05	441.76166231364493	41.243	0.46459	41.107	40.83	41.294	-0.13554					18	11	2	0	0	0	0.027866	1	3605	3605		18.324	0	1	176230	+		4484	36796;24908	2654	2666	5957	5957					0.06280624337182417
ASLNLPAVSW	10	Unmodified	_ASLNLPAVSW_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.287109375	2	529.287474	1056.5604	0.1577	8.3469E-05	-0.53522	-0.00028328	-0.37752	-0.00019981	529.2871241784405	85.548	1.1435	85.353	84.927	86.071	-0.19508					56	26	4	0	0	0	0.37509	4	10358	10347;10358;10370;10383		101.25	12.863	1	2586200			4485	1090	2655	2667	5958;5959;5960;5961	5959					0.034377429602727716
ASLNLPAVSW	10	Unmodified	_ASLNLPAVSW_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2871704101562	2	529.287474	1056.5604	0.38914	0.00020597	-0.91607	-0.00048487	-0.52693	-0.0002789	529.286894664619	85.499	1.0534	85.35	84.867	85.92	-0.14967					56	24	4	0	0	0	0.42599	2	10366	10366;10377		96.034	13.793	1	2491000			4486	1090	2655	2667	5962;5963	5962					0.034377429602727716
ASLNLPAVSW	10	Unmodified	_ASLNLPAVSW_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2871704101562	2	529.287474	1056.5604	0.42473	0.0002248	-0.85236	-0.00045114	-0.42763	-0.00022634	529.286946788846	85.53	1.0172	85.392	84.988	86.006	-0.13753					57	23	4	0	0	0	0.37509	3	10364	10341;10353;10364		101.25	10.883	1	2225600			4487	1090	2655	2667	5964;5965;5966	5966					0.034377429602727716
ASLPEAQVW	9	Unmodified	_ASLPEAQVW_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7582702636719	2	500.758549	999.502546	-0.25691	-0.00012865	0.10927	5.4717E-05	-0.14764	-7.3931E-05	500.7584978150498	70.149	0.61983	69.881	69.578	70.198	-0.26725					26	14	2	0	0	0	0.23085	2	8158	8147;8158		84.916	13.283	1	1808600			4488	4253	2656	2668	5967;5968	5968					0.00277481034856919
ASLPEAQVW	9	Unmodified	_ASLPEAQVW_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7579650878906	2	500.758549	999.502546	-0.06234	-3.1217E-05	-0.90429	-0.00045283	-0.96663	-0.00048405	500.758514269829	70.047	0.90707	69.796	69.236	70.143	-0.25063					67	21	5	0	0	0	0.11092	1	8142	8142		108.09	14.892	1	1907500			4489	4253	2656	2668	5969	5969					0.00277481034856919
ASLPEAQVW	9	Unmodified	_ASLPEAQVW_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7577209472656	2	500.758549	999.502546	-0.20783	-0.00010407	-0.99295	-0.00049723	-1.2008	-0.0006013	500.75847477864414	70.005	0.73927	69.782	69.348	70.087	-0.22245					57	17	5	0	0	0	0.26966	1	8131	8131		79.713	5.4575	1	1954900			4490	4253	2656	2668	5970	5970					0.00277481034856919
ASLPLRVSF	9	Unmodified	_ASLPLRVSF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2922668457031	2	495.292559	988.570566	-0.52874	-0.00026188	-0.05789	-2.8672E-05	-0.58663	-0.00029055	495.29259020099397	68.462	1.018	68.201	67.814	68.832	-0.26166					81	24	5	0	0	0	0.056725	5	7898	7887;7898;7910;7922;7934		126.24	54.947	1	30210000			4491	2607	2657	2669	5971;5972;5973;5974;5975	5972					0.07582350685515848
ASLPLRVSF	9	Unmodified	_ASLPLRVSF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.29248046875	2	495.292559	988.570566	0.43358	0.00021475	-0.88987	-0.00044074	-0.45628	-0.00022599	495.2921697601002	68.446	1.0021	68.203	67.787	68.79	-0.24277					85	24	5	0	0	0	0.034407	5	7899	7887;7899;7911;7923;7935		138.06	64.088	1	33008000			4492	2607	2657	2669	5976;5977;5978;5979;5980	5977					0.07582350685515848
ASLPLRVSF	9	Unmodified	_ASLPLRVSF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.29254150390625	2	495.292559	988.570566	0.41796	0.00020701	-0.98538	-0.00048805	-0.56743	-0.00028104	495.29210149872637	68.406	1.0815	68.176	67.637	68.719	-0.23048					86	26	5	0	0	0	0.056725	6	7900	7868;7878;7888;7900;7912;7925		126.24	52.268	1	31633000			4493	2607	2657	2669	5981;5982;5983;5984;5985;5986	5984					0.07582350685515848
ASLQNQIVW	9	Unmodified	_ASLQNQIVW_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.78466796875	2	529.785099	1057.55564	-0.16954	-8.982E-05	-0.19786	-0.00010483	-0.36741	-0.00019465	529.784879757125	72.41	0.80518	72.133	71.908	72.713	-0.2769					47	18	4	0	0	0	0.17822	1	8487	8487		93.195	16.421	1	1655100			4494	1474	2658	2670	5987	5987					0.029168588175252808
ASLQNQIVW	9	Unmodified	_ASLQNQIVW_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.78466796875	2	529.785099	1057.55564	-0.10513	-5.5699E-05	-0.42325	-0.00022423	-0.52838	-0.00027993	529.7848174501404	72.426	0.63144	72.161	71.921	72.553	-0.26479					43	14	4	0	0	0	0.20967	2	8492	8492;8501		87.754	7.8151	1	1626400			4495	1474	2658	2670	5988;5989	5988					0.029168588175252808
ASLQNQIVW	9	Unmodified	_ASLQNQIVW_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7855224609375	2	529.785099	1057.55564	-0.40782	-0.00021606	-0.17962	-9.5158E-05	-0.58744	-0.00031122	529.7849412158415	72.296	0.66774	72.098	71.829	72.497	-0.19811					35	15	3	0	0	0	0.23085	2	8464	8452;8464		84.916	13.62	1	1743200			4496	1474	2658	2670	5990;5991	5991					0.029168588175252808
ASLSFGYIY	9	Unmodified	_ASLSFGYIY_					0	0	0			REV__ENSG00000152661|ENST00000282561|GJA1	REV__ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7535705566406	2	510.755475	1019.4964	0.0015907	8.1248E-07	-4.0765	-0.0020821	-4.0749	-0.0020813	510.7532212924537	45.736	0.82555	45.639	45.326	46.152	-0.096653					61	22	4	0	0	0	0.36105	1	4357	4357		68.485	2.6815	1	4163300	+		4497	24857	2659	2671	5992	5992					-0.012570371966717175
ASLSTFQQMW	10	Oxidation (M)	_ASLSTFQQM(Oxidation (M))W_		ASLSTFQQM(1)W		ASLSTFQQM(180)W	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.779541015625	2	607.779156	1213.54376	-0.67554	-0.00041058	0.83589	0.00050804	0.16035	9.7455E-05	607.7794613388564	71.922	0.84434	71.647	71.354	72.198	-0.2751					59	20	4	0	0	0	0.0064244	4	8394	8394;8403;8415;8430		176.09	66.608	1	3176900			4498	1564;9900;9925;9702	2660	2672	5993;5994;5995;5996	5993		52			-0.05447125987984691
ASLSTFQQMW	10	Oxidation (M)	_ASLSTFQQM(Oxidation (M))W_		ASLSTFQQM(1)W		ASLSTFQQM(150)W	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.779052734375	2	607.779156	1213.54376	-0.048228	-2.9312E-05	0.033979	2.0652E-05	-0.014249	-8.6604E-06	607.779062440742	71.885	1.0663	71.623	71.322	72.388	-0.26199					64	25	4	0	0	0	0.032721	4	8403	8403;8413;8426;8439		153.04	57.002	1	2908000			4499	1564;9900;9925;9702	2660	2672	5997;5998;5999;6000	5997		52			-0.05447125987984691
ASLSTFQQMW	10	Oxidation (M)	_ASLSTFQQM(Oxidation (M))W_		ASLSTFQQM(1)W		ASLSTFQQM(220)W	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.7788696289062	2	607.779156	1213.54376	-0.061079	-3.7123E-05	-0.00034062	-2.0702E-07	-0.06142	-3.733E-05	607.7790264252899	71.762	0.84714	71.556	71.265	72.112	-0.20613					61	20	5	0	0	0	1.1117E-05	4	8381	8371;8381;8393;8405		221.33	86.561	1	3281800			4500	1564;9900;9925;9702	2660	2672	6001;6002;6003;6004	6002		52			-0.05447125987984691
ASLSTFQQMW	10	Oxidation (M)	_ASLSTFQQM(Oxidation (M))W_					0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	607.779156	1213.54376	-0.85264	-0.00051822	1.546	0.0009396	0.69332	0.00042138	607.7794239205167	71.661	0.3317	71.671	71.472	71.803	0.010735	0.047143	0.001528	NaN	221.33	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108650			4501	1564;9900;9925;9702	2660	2672				52			-0.05447125987984691
ASLSTFQQMW	10	Unmodified	_ASLSTFQQMW_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.7822875976562	2	599.781699	1197.54884	0.17386	0.00010428	-0.095379	-5.7207E-05	0.078478	4.7069E-05	599.7815148181132	82.674	1.0394	82.454	82.13	83.169	-0.22015					68	23	4	0	0	0	0.26927	4	9968	9946;9956;9968;9982		112.41	58.286	1	2442600			4502	1564;9900;9925;9702	2660	2673	6005;6006;6007;6008	6007					-0.04202822125353123
ASLSTFQQMW	10	Unmodified	_ASLSTFQQMW_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.7821044921875	2	599.781699	1197.54884	-0.29713	-0.00017821	0.37106	0.00022256	0.073937	4.4346E-05	599.7817535756967	82.635	0.9937	82.454	82.114	83.107	-0.18079					58	22	4	0	0	0	0.11225	3	9963	9953;9963;9975		132.76	67.292	1	2570400			4503	1564;9900;9925;9702	2660	2673	6009;6010;6011	6010					-0.04202822125353123
ASLSTFQQMW	10	Unmodified	_ASLSTFQQMW_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.781494140625	2	599.781699	1197.54884	-0.70344	-0.00042191	0.59951	0.00035957	-0.10393	-6.2336E-05	599.7819359583871	82.595	0.99417	82.455	81.999	82.993	-0.14014					61	22	4	0	0	0	0.11225	4	9943	9933;9943;9956;9967		132.76	53.045	1	2471000			4504	1564;9900;9925;9702	2660	2673	6012;6013;6014;6015	6013					-0.04202822125353123
ASLVARASLGT	11	Unmodified	_ASLVARASLGT_					0	0	0			REV__ENST00000570699.1_1_17:636236-644807:+|nuORF	REV__ENST00000570699.1_1_17:636236-644807:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3033447265625	2	523.303655	1044.59276	-0.67907	-0.00035536	0.14014	7.3336E-05	-0.53893	-0.00028202	523.3036531837259	85.156	2.651	85.182	83.64	86.291	0.025536					197	62	4	0	0	0	1.0465	1	10566	10566		26.063	1.5594	1	2957200	+		4505	35394	2661	2674	6016	6016					0.07224530363305348
ASLVVRSL	8	Unmodified	_ASLVVRSL_					0	0	0			REV__ENST00000468818.1_1_1:111992163-111998855:+|nuORF	REV__ENST00000468818.1_1_1:111992163-111998855:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8467712402344	2	422.766178	843.517802	-0.086682	-3.6646E-05	0.28724	0.00012143	0.20055	8.4788E-05	422.766205408781	33.31	0.54557	33.11	32.896	33.442	-0.20019					26	13	3	0	0	0	0.027866	1	2361	2361		35.618	11.416	1	424710	+		4506	22278	2662	2675	6017	6017					0.08978392622714182
ASNPDRDLDSE	11	Unmodified	_ASNPDRDLDSE_					0	0	0			REV__ENSG00000139318|ENST00000279488|DUSP6	REV__ENSG00000139318|ENST00000279488|DUSP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.7557373046875	3	406.845951	1217.51602	-0.25895	-0.00010535	4.311	0.0017539	4.0521	0.0016486	406.84761161881045	38.667	0.35417	38.441	38.246	38.6	-0.2257					15	8	2	0	0	0	0.024723	1	3217	3217		11.455	0	1	133000	+		4507	23933	2663	2676	6018	6018					-0.08403357714519188
ASPKEKYSL	9	Unmodified	_ASPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.7796325683594	2	511.779482	1021.54441	-0.74242	-0.00037996	-0.6042	-0.00030922	-1.3466	-0.00068917	511.77939508185494	29.619	1.1097	29.374	29.011	30.121	-0.24524					93	25	6	0	0	0	0.28753	3	1822	1810;1822;1834		77.318	18.536	1	7571100			4508	2053	2664	2677	6019;6020;6021	6020					0.034500367233818
ASPKEKYSL	9	Unmodified	_ASPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.7794494628906	2	511.779482	1021.54441	-0.73891	-0.00037816	-0.58185	-0.00029778	-1.3208	-0.00067594	511.7793877978541	29.516	1.312	29.343	28.937	30.249	-0.17258					104	30	6	0	0	0	0.2101	3	1822	1789;1797;1822		87.696	18.91	1	8007700			4509	2053	2664	2677	6022;6023;6024	6024					0.034500367233818
ASPKEKYSL	9	Unmodified	_ASPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7793273925781	2	511.779482	1021.54441	-0.24176	-0.00012373	-1.0618	-0.00054343	-1.3036	-0.00066716	511.7791751010672	29.467	1.3471	29.317	28.912	30.259	-0.14952					92	31	6	0	0	0	0.2101	3	1785	1764;1773;1785		87.696	18.91	1	8065000			4510	2053	2664	2677	6025;6026;6027	6027					0.034500367233818
ASPRRVSR	8	Unmodified	_ASPRRVSR_					0	0	0		nc|ENSG00000291122|Q8NAP1|CASTOR3P	nc|ENSG00000291122|Q8NAP1|CASTOR3P	nc|ENSG00000291122|Q8NAP1|CASTOR3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7642822265625	2	464.7754	927.536246	-1.2271	-0.00057031	0.97105	0.00045132	-0.25602	-0.00011899	464.7759311094611	38.278	0.17318	38.278	38.222	38.395	0					6	4	2	0	0	0	0.027866	1	3203	3203		51.335	0	1	57465			4511	18836	2665	2678	6028	6028					0.06957947317278013
ASPYVRSR	8	Unmodified	_ASPYVRSR_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2567443847656	2	468.256508	934.498464	1.2243	0.00057328	-0.67333	-0.00031529	0.55095	0.00025798	468.25576313730096	19.49	0.44596	19.257	19.077	19.523	-0.23345					17	8	3	0	0	0	1.0574	1	407	407		23.042	1.3402	1	94258			4512	689	2666	2679	6029	6029					0.0285943633180068
ASPYVRSR	8	Unmodified	_ASPYVRSR_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.256508	934.498464	0.36136	0.00016921	-0.45623	-0.00021363	-0.094869	-4.4423E-05	468.2561155814004	19.665	0.74118	19.504	18.935	19.676	-0.16079	0.14533	0.00032424	NaN	23.042	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151960			4513	689	2666	2679							0.0285943633180068
ASPYVRSR	8	Unmodified	_ASPYVRSR_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.256508	934.498464	0.91477	0.00042835	-1.3818	-0.00064702	-0.467	-0.00021868	468.25568782396334	19.516	0.54645	19.316	19.106	19.653	-0.2001	-0.043038	-0.00054254	NaN	23.042	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69665			4514	689	2666	2679							0.0285943633180068
ASQKRPLGG	9	Unmodified	_ASQKRPLGG_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.I3692L|1|0.08|ENSG00000086758|chrX:53544737-53544737|T/G|missense_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2640075683594	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.91321	1	10263	10263		31.53	0	1	3048400			4515	1825	2667	2680	6030	6030					0.05435722848869773
ASQKRPLGG	9	Unmodified	_ASQKRPLGG_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.I3692L|1|0.08|ENSG00000086758|chrX:53544737-53544737|T/G|missense_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.26348876953125	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.80003	1	10223	10223		39.253	2.0937	1	2903100			4516	1825	2667	2680	6031	6031					0.05435722848869773
ASQKRPLGG	9	Unmodified	_ASQKRPLGG_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.I3692L|1|0.08|ENSG00000086758|chrX:53544737-53544737|T/G|missense_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.26446533203125	2	457.264333	912.514114	0.383	0.00017513	-0.35618	-0.00016287	0.026819	1.2263E-05	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	0.82115	1	9805	9805		37.812	2.6108	1	4505400			4517	1825	2667	2680	6032	6032					0.05435722848869773
ASQVLPAQT	9	Unmodified	_ASQVLPAQT_					0	0	0		ENST00000503120.5_1_5:138724308-138724542:-|nuORF	ENST00000503120.5_1_5:138724308-138724542:-|nuORF	ENST00000503120.5_1_5:138724308-138724542:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2841796875	2	457.750724	913.486896	-0.43499	-0.00019912	0.055264	2.5297E-05	-0.37973	-0.00017382	457.7504545708319	56.531	0.22169	56.366	56.201	56.423	-0.16431					6	5	2	0	0	0	0.024021	1	6280	6280		32.812	0	1	54877			4518	15688	2668	2681	6033	6033					0.026691945178072274
ASRGPIAFW	9	Unmodified	_ASRGPIAFW_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.7693786621094	2	502.769252	1003.52395	-0.14806	-7.4442E-05	-0.045953	-2.3104E-05	-0.19402	-9.7546E-05	502.76915720578904	65.734	1.0166	65.492	65.207	66.224	-0.24145					54	24	3	0	0	0	0.29158	4	7507	7499;7507;7519;7532		76.774	28.859	1	4151300			4519	2401	2669	2682	6034;6035;6036;6037	6035					0.02232910854218062
ASRGPIAFW	9	Unmodified	_ASRGPIAFW_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.76885986328125	2	502.769252	1003.52395	-1.1489	-0.00057762	0.832	0.0004183	-0.31687	-0.00015931	502.76959494011646	65.684	1.1001	65.47	65.094	66.194	-0.21327					59	26	3	0	0	0	0.2508	3	7510	7499;7510;7522		82.241	30.905	1	4317200			4520	2401	2669	2682	6038;6039;6040	6039					0.02232910854218062
ASRGPIAFW	9	Unmodified	_ASRGPIAFW_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.769287109375	2	502.769252	1003.52395	-0.73863	-0.00037136	0.43358	0.00021799	-0.30504	-0.00015337	502.76935679578094	65.754	1.0117	65.503	65.148	66.16	-0.25112					53	24	3	0	0	0	0.27161	2	7503	7503;7515		79.451	8.0731	1	3841000			4521	2401	2669	2682	6041;6042	6041					0.02232910854218062
ASRNEKVL	8	Unmodified	_ASRNEKVL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52;ENST00000551023.1_1_12:56648058-56650843:-|nuORF	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.7638854980469	2	458.764166	915.513779	-0.34431	-0.00015796	-0.13701	-6.2854E-05	-0.48131	-0.00022081	458.7641575586641	23.516	1.097	23.337	23.067	24.164	-0.17989					60	25	3	0	0	0	0.50239	1	928	928		85.359	0.44396	1	9688700			4522	5355	2670	2683	6043	6043					0.052643031289903774
ASRPPVTL	8	Unmodified	_ASRPPVTL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.750732421875	2	420.750527	839.486502	-0.050228	-2.1134E-05	0.27347	0.00011506	0.22325	9.3931E-05	420.7505503334244	41.891	1.0687	41.768	41.421	42.49	-0.12299					72	28	4	0	0	0	0.20995	4	3732	3720;3732;3746;3758		138.83	38.906	1	6239600			4523	7950;9954;16546	2671	2684	6044;6045;6046;6047	6045					0.06033819588606093
ASRPPVTL	8	Unmodified	_ASRPPVTL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.75042724609375	2	420.750527	839.486502	-0.34235	-0.00014404	0.46516	0.00019571	0.1228	5.167E-05	420.7506349627158	42.054	1.0608	41.822	41.469	42.53	-0.23186					66	28	4	0	0	0	0.23402	3	3738	3738;3749;3761		134.81	44.034	1	6476800			4524	7950;9954;16546	2671	2684	6048;6049;6050	6048					0.06033819588606093
ASRPPVTL	8	Unmodified	_ASRPPVTL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.7504577636719	2	420.750527	839.486502	0.14907	6.272E-05	0.015229	6.4076E-06	0.1643	6.9127E-05	420.7504050009353	42.088	1.0083	41.857	41.508	42.517	-0.2303					77	27	5	0	0	0	0.23402	4	3736	3725;3736;3747;3763		134.81	41.615	1	5958100			4525	7950;9954;16546	2671	2684	6051;6052;6053;6054	6052					0.06033819588606093
ASSALDALLCA	11	Unmodified	_ASSALDALLCA_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENSG00000215421|ENST00000299687|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.28076171875	2	517.762975	1033.5114	-0.27024	-0.00013992	0.45419	0.00023516	0.18395	9.5243E-05	517.7630634539016	33.86	0.4819	33.636	33.321	33.803	-0.22412					16	11	2	0	0	0	0.024756	1	2460	2460		44.377	10.862	1	85999			4526	10589	2672	2685	6055	6055					-0.004019133909878292
ASSARRVSL	9	Unmodified	_ASSARRVSL_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7756042480469	2	473.775065	945.535577	-0.18499	-8.7646E-05	2.2272	0.0010552	2.0422	0.00096757	473.77631945781604	98.654	0.83246	98.488	98.2	99.033	-0.16532					24	18	2	0	0	0	0.37611	1	12194	12194		67.494	1.5962	1	221020	+		4527	37063	2673	2686	6056	6056					0.06063107877571383
ASSFLKSLLV	10	Unmodified	_ASSFLKSLLV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2755737304688	2	532.82115	1063.62775	-0.3697	-0.00019698	-0.28583	-0.00015229	-0.65552	-0.00034928	532.8208406450202	49.789	0.37694	49.638	49.368	49.745	-0.1512					17	9	2	0	0	0	0.03519	1	5147	5147		36.447	0.82846	1	149440	+		4528	28058	2674	2687	6057	6057					0.09847773171213703
ASSFYTTSEHS	11	Unmodified	_ASSFYTTSEHS_					0	0	0		ENST00000506739.1_1_4:14113647-14140203:+|nuORF	ENST00000506739.1_1_4:14113647-14140203:+|nuORF	ENST00000506739.1_1_4:14113647-14140203:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2488098144531	3	406.175409	1215.5044	0.93197	0.00037854	-0.14174	-5.7571E-05	0.79023	0.00032097	406.1756005404817	87.925	0.46522	87.789	87.602	88.067	-0.13613					29	11	4	0	0	0	0.024759	1	10743	10743		17.833	0	1	160850			4529	15748	2675	2688	6058	6058					-0.0947355473783773
ASSGTSRTW	9	Unmodified	_ASSGTSRTW_					0	0	0		ENST00000591843.1_1_19:13255226-13260604:-|nuORF	ENST00000591843.1_1_19:13255226-13260604:-|nuORF	ENST00000591843.1_1_19:13255226-13260604:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.72747802734375	2	476.727781	951.441008	-0.3927	-0.00018721	-0.013048	-6.2205E-06	-0.40574	-0.00019343	476.72768519583553	26.673	0.55314	26.437	26.197	26.75	-0.23603					46	13	4	0	0	0	0.1158	2	1402	1402;1415		107.01	30.012	1	2482600			4530	17363	2676	2689	6059;6060	6059					-0.03665450664436776
ASSGTSRTW	9	Unmodified	_ASSGTSRTW_					0	0	0		ENST00000591843.1_1_19:13255226-13260604:-|nuORF	ENST00000591843.1_1_19:13255226-13260604:-|nuORF	ENST00000591843.1_1_19:13255226-13260604:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7275085449219	2	476.727781	951.441008	-0.26962	-0.00012854	-0.20246	-9.6518E-05	-0.47208	-0.00022505	476.7275977012506	26.478	0.61872	26.31	26.019	26.638	-0.16816					48	15	4	0	0	0	0.053401	4	1385	1363;1374;1385;1398		127.46	41.417	1	2612300			4531	17363	2676	2689	6061;6062;6063;6064	6063					-0.03665450664436776
ASSLIPRLDP	10	Unmodified	_ASSLIPRLDP_					0	0	0		ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.8062744140625	2	534.806031	1067.59751	-0.90426	-0.00048361	0.74965	0.00040092	-0.15462	-8.269E-05	534.806391399952	80.366	0.94426	80.366	79.994	80.939	0					44	22	3	0	0	0	0.99657	1	9993	9993		46.457	0.50483	1	1898100			4532	15137	2677	2690	6065	6065					0.06641414506043475
ASSLSHLDL	9	Unmodified	_ASSLSHLDL_					0	0	0			REV__nc|ENSG00000159023|P11171-2|EPB41	REV__nc|ENSG00000159023|P11171-2|EPB41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2927551269531	2	471.748182	941.481811	0.77521	0.0003657	-0.12882	-6.0769E-05	0.64639	0.00030493	471.7478509828649	49.549	0.83494	49.549	49.249	50.084	0					66	22	4	0	0	0	0.024263	1	5216	5216		34.173	15.848	1	1982200	+		4533	25228	2678	2691	6066	6066					0.008728906551823457
ASSMSTSMSSP	11	Unmodified	_ASSMSTSMSSP_					0	0	0			REV__ENST00000414083.6_2_6:33289124-33290733:-|nuORF	REV__ENST00000414083.6_2_6:33289124-33290733:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.278564453125	2	536.717907	1071.42126	-1.5501	-0.00083198	3.254	0.0017465	1.7039	0.00091451	536.7193374049784	25.036	1.4306	25.002	23.882	25.313	-0.034397					48	32	2	0	0	0	0.024756	1	1102	1102		16.717	0	1	94664	+		4534	29755	2679	2692	6067	6067					-0.11159330781697463
ASSPEPGTSEL	11	Unmodified	_ASSPEPGTSEL_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7496337890625	2	537.751118	1073.48768	-0.90581	-0.0004871	-1.478	-0.00079482	-2.3839	-0.0012819	537.750147843429	76.272	0.94594	76.043	75.704	76.65	-0.22843					61	23	3	0	0	0	0.67171	1	9355	9355		65.465	2.1591	1	1519500			4535	4230	2680	2693	6068	6068					-0.046120556238065546
ASSPSVMGQDQ	11	Unmodified	_ASSPSVMGQDQ_					0	0	0		ENST00000566902.5_3_16:32164220-32165147:-|nuORF	ENST00000566902.5_3_16:32164220-32165147:-|nuORF	ENST00000566902.5_3_16:32164220-32165147:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.7540893554688	2	553.74277	1105.47099	-0.6627	-0.00036696	-4.2241	-0.0023391	-4.8868	-0.002706	553.7402530563904	27.001	0.54393	26.758	26.41	26.954	-0.24217					25	12	3	0	0	0	0.024771	1	1430	1430		42.864	0	1	190000			4536	16949	2681	2694	6069	6069					-0.07752879781401134
ASSPTGRVARD	11	Unmodified	_ASSPTGRVARD_					0	0	0			REV__ENST00000529979.5_1_11:10615678-10621272:+|nuORF	REV__ENST00000529979.5_1_11:10615678-10621272:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.8338623046875	2	558.791444	1115.56833	-0.32716	-0.00018282	-2.6964	-0.0015067	-3.0236	-0.0016895	558.7897310590339	64.158	0.79654	63.93	63.7	64.497	-0.22773					26	19	2	0	0	0	0.02478	1	7282	7282		56.434	15.656	1	256090	+		4537	34522	2682	2695	6070	6070					0.01517270209774324
ASSPVLRQM	9	Unmodified	_ASSPVLRQM_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7657775878906	2	494.765852	987.51715	-0.78753	-0.00038964	0.423	0.00020929	-0.36453	-0.00018036	494.7658726096175	40.75	0.67658	40.614	40.308	40.985	-0.13553					39	17	3	0	0	0	0.32064	1	3560	3560		72.879	23.438	1	1111400			4538	1775	2683	2696	6071	6071					0.022892299113550507
ASSPVLRQM	9	Unmodified	_ASSPVLRQM_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7657775878906	2	494.765852	987.51715	-1.1451	-0.00056657	0.72004	0.00035625	-0.42509	-0.00021032	494.7659454964257	40.995	0.7019	40.764	40.378	41.08	-0.23029					42	18	3	0	0	0	0.37611	1	3571	3571		67.494	3.2864	1	1036200			4539	1775	2683	2696	6072	6072					0.022892299113550507
ASSRRGLL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASSRRGLL_					1	0	0		nc|ENSG00000125787|O43555-2|GNRH2;ENSG00000125787|ENST00000359100|GNRH2;nc|ENSG00000125787|O43555|GNRH2	nc|ENSG00000125787|O43555-2|GNRH2	nc|ENSG00000125787|O43555-2|GNRH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2666015625	2	451.264333	900.514114	-0.053259	-2.4034E-05	-0.24006	-0.00010833	-0.29332	-0.00013237	451.26416793174377	33.116	0.67712	32.916	32.609	33.286	-0.20019					49	16	4	0	0	0	0.78609	1	2317	2317		60.294	7.9948	1	5445200			4540	4140	2684	2697	6073	6073					0.059877228488517176
ASSTAPYIP	9	Unmodified	_ASSTAPYIP_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2179260253906	2	453.732	905.449448	0.53958	0.00024482	-0.52882	-0.00023994	0.010758	4.8811E-06	453.73158510841034	59.278	0.48321	59.037	58.776	59.259	-0.24165					17	11	2	0	0	0	0.024412	1	6558	6558		17.365	0	1	240030			4541	8130	2685	2698	6074	6074					-0.007058967478201339
ASSTTKEKETK	11	Unmodified	_ASSTTKEKETK_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5073547363281	3	403.882225	1208.62485	0.0073892	2.9844E-06	-4.1241	-0.0016656	-4.1167	-0.0016627	403.8804793626618	25.377	0.80095	25.206	24.865	25.666	-0.17151					41	18	3	0	0	0	0.02474	1	1123	1123		13.73	0	1	335160			4542	3772	2686	2699	6075	6075					0.02887853255765549
ASSTTKEKETK	11	Unmodified	_ASSTTKEKETK_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	403.882225	1208.62485	-0.040106	-1.6198E-05	-3.6204	-0.0014622	-3.6605	-0.0014784	403.88056596078644	25.541	0.83712	25.314	24.975	25.812	-0.22683	0.052076	0.00065643	NaN	9.7451	47	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454620			4543	3772	2686	2699							0.02887853255765549
ASSTTKEKETK	11	Unmodified	_ASSTTKEKETK_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	403.882225	1208.62485	0.66865	0.00027006	-5.7663	-0.0023289	-5.0976	-0.0020588	403.88002259179325	25.437	0.88278	25.266	24.955	25.837	-0.17078	0.0039557	-0.0019437	NaN	9.7451	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309220			4544	3772	2686	2699							0.02887853255765549
ASSYVPCPYI	10	Unmodified	_ASSYVPCPYI_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2609252929688	2	550.260068	1098.50558	0.1473	8.1055E-05	2.8742	0.0015816	3.0215	0.0016626	550.2614914202358	91.431	1.3494	91.291	90.943	92.292	-0.13942					75	31	3	0	0	0	0.91051	1	11224	11224		53.351	3.9099	1	2815800	+		4545	26222	2687	2700	6076	6076					-0.0397301190264443
ASTVSAFSVL	10	Unmodified	_ASTVSAFSVL_					0	0	0		ENSG00000112186|ENST00000229922|CAP2;nc|ENSG00000112186|P40123-2|CAP2	ENSG00000112186|ENST00000229922|CAP2	ENSG00000112186|ENST00000229922|CAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.5797119140625	2	491.266207	980.517862	-0.12504	-6.143E-05	-2.7979	-0.0013745	-2.9229	-0.0014359	491.26452330715523	19.334	0.63838	19.215	18.953	19.591	-0.11872					23	12	2	0	0	0	0.03519	1	361	361		42.396	11.892	1	21027			4546	3181	2688	2701	6077	6077					0.026823478320466165
ASVINKDKSK	10	Unmodified	_ASVINKDKSK_					0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3167114257812	2	545.316763	1088.61897	-0.46982	-0.0002562	0.22064	0.00012032	-0.24919	-0.00013589	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.118	1	11122	11122		30.318	1.1477	1	12792000	+		4547	23938	2689	2702	6078	6078					0.07820799534761136
ASVLGPRR	8	Unmodified	_ASVLGPRR_					0	0	0		ENSG00000100985|ENST00000372330|MMP9	REV__MESP2|p.Q256Vfs*110|1|0.28|ENSG00000188095|chr15:89777122-89777123|AC/-|frameshift_variant	REV__MESP2|p.Q256Vfs*110|1|0.28|ENSG00000188095|chr15:89777122-89777123|AC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.26171875	2	428.261594	854.508634	0.10911	4.6729E-05	0.34496	0.00014773	0.45407	0.00019446	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0338	1	11319	11319		31.955	1.4512	1	88816000			4548	2268	2690	2703	6079	6079					0.0755604405703707
ASVLRLVSSSA	11	Unmodified	_ASVLRLVSSSA_					0	0	0		ENST00000265062.7_1_3:128445042-128514207:+|nuORF	ENST00000265062.7_1_3:128445042-128514207:+|nuORF	ENST00000265062.7_1_3:128445042-128514207:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165283203125	2	545.316763	1088.61897	-0.46982	-0.0002562	0.22064	0.00012032	-0.24919	-0.00013589	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.013	1	11170	11170		33.922	1.1092	1	12792000			4549	11584	2691	2704	6080	6080					0.07820799534761136
ASVSSAKTQG	10	Unmodified	_ASVSSAKTQG_					0	0	0		ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	ENST00000392054.7_1_2:230127567-230135921:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2446594238281	2	468.243264	934.471974	0.55673	0.00026068	2.4757	0.0011592	3.0324	0.0014199	468.2442846107578	100.75	1.9975	100.63	100.2	102.2	-0.12503					84	51	2	0	0	0	1.1333	1	12547	12547		28.081	2.5074	1	310880			4550	13407	2692	2705	6081	6081					0.002117026498240193
ASYLYKGTL	9	Unmodified	_ASYLYKGTL_					0	0	0			REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.27764892578125	2	508.276575	1014.5386	-0.7501	-0.00038126	0.86864	0.00044151	0.11854	6.0249E-05	508.2768802640919	55.289	1.2666	55.142	54.837	56.104	-0.14609					75	34	3	0	0	0	0.16638	1	5911	5911		95.815	7.6382	1	5719900	+		4551	23241	2693	2706	6082	6082					0.03190938211707817
ASYLYKGTL	9	Unmodified	_ASYLYKGTL_					0	0	0			REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2767639160156	2	508.276575	1014.5386	-0.30479	-0.00015492	0.352	0.00017891	0.047209	2.3995E-05	508.2766538931545	55.371	0.9382	55.141	54.855	55.794	-0.23087					60	26	3	0	0	0	0.03666	2	5927	5927;5940		136.27	15.4	1	7001600	+		4552	23241	2693	2706	6083;6084	6083					0.03190938211707817
ASYLYKGTL	9	Unmodified	_ASYLYKGTL_					0	0	0			REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.27728271484375	2	508.276575	1014.5386	-0.40088	-0.00020376	0.41823	0.00021258	0.017347	8.8169E-06	508.2766776503019	55.335	0.92322	55.129	54.866	55.79	-0.20613					60	25	3	0	0	0	0.053401	1	5922	5922		127.46	1.2191	1	6902900	+		4553	23241	2693	2706	6085	6085					0.03190938211707817
ASYSGKAADVW	11	Unmodified	_ASYSGKAADVW_					0	0	0		ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.777587890625	2	577.77747	1153.54039	0.019366	1.1189E-05	-0.29613	-0.00017109	-0.27676	-0.00015991	577.7772127413746	46.525	0.8941	46.428	46.152	47.046	-0.096649					74	24	4	0	0	0	0.063826	1	4494	4494		117.71	5.4103	1	5072600			4554	2301	2694	2707	6086	6086					-0.030240527703654152
ASYSLFLPT	9	Unmodified	_ASYSLFLPT_					0	0	0		ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7380065917969	2	499.7633	997.512048	-0.15076	-7.5345E-05	1.5256	0.00076246	1.3749	0.00068711	499.7639495351068	33.677	0.44114	33.446	33.232	33.673	-0.23107					15	10	2	0	0	0	0.024457	1	2428	2428		37.159	11.709	1	93499			4555	8514	2695	2708	6087	6087					0.013192493203632694
ATAAEVEAV	9	Unmodified	_ATAAEVEAV_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2;REV__FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.90673828125	2	430.721633	859.428712	-0.31493	-0.00013565	1.9577	0.00084323	1.6428	0.00070758	430.7224436810529	38.149	0.46553	37.93	37.718	38.184	-0.21849					21	13	2	0	0	0	0.024381	1	3154	3154		29.15	0	1	358650	+		4556	25582;36024	2696	2709	6088	6088					-0.0066248712747665195
ATADEIVKL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATADEIVKL_					1	0	0		ENSG00000149476|ENST00000394900|TKFC;nc|ENSG00000149476|Q3LXA3-2|TKFC;ENST00000524953.1_1_11:61110045-61110363:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	ENSG00000149476|ENST00000394900|TKFC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2809753417969	2	501.279315	1000.54408	0.14256	7.1464E-05	0.26943	0.00013506	0.41199	0.00020652	501.2793333856707	76.669	0.91814	76.401	76.008	76.927	-0.26806					57	21	4	0	0	0	0.086035	3	9098	9085;9098;9110		115.49	30.579	1	2755300			4557	6091	2697	2710	6089;6090;6091	6090					0.04382617003523137
ATADEIVKL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATADEIVKL_					1	0	0		ENSG00000149476|ENST00000394900|TKFC;nc|ENSG00000149476|Q3LXA3-2|TKFC;ENST00000524953.1_1_11:61110045-61110363:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	ENSG00000149476|ENST00000394900|TKFC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2821044921875	2	501.279315	1000.54408	0.091538	4.5886E-05	0.35162	0.00017626	0.44316	0.00022215	501.2794346348873	76.59	0.91888	76.338	75.944	76.863	-0.25162					51	21	3	0	0	0	0.19099	1	9114	9114		90.37	8.1293	1	2881700			4558	6091	2697	2710	6092	6092					0.04382617003523137
ATADEIVKL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATADEIVKL_					1	0	0		ENSG00000149476|ENST00000394900|TKFC;nc|ENSG00000149476|Q3LXA3-2|TKFC;ENST00000524953.1_1_11:61110045-61110363:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	ENSG00000149476|ENST00000394900|TKFC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2812805175781	2	501.279315	1000.54408	-0.43375	-0.00021743	0.59884	0.00030018	0.16508	8.2752E-05	501.27953320216153	76.456	0.80507	76.288	76.054	76.859	-0.16854					35	18	2	0	0	0	0.03849	2	9068	9068;9080		134.81	36.181	1	3021500			4559	6091	2697	2710	6093;6094	6093					0.04382617003523137
ATAEGSVDNL	10	Unmodified	_ATAEGSVDNL_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2719421386719	2	488.732729	975.450904	-0.59254	-0.00028959	1.3194	0.00064484	0.72688	0.00035525	488.7331615889196	38.766	0.52448	38.545	38.334	38.858	-0.22148					21	13	2	0	0	0	0.03519	1	3265	3265		32.812	3.6629	1	140930	+		4560	21708	2698	2711	6095	6095					-0.03780307449721931
ATAETVEL	8	Unmodified	_ATAETVEL_					0	0	0		TOX4|p.V300A|1|0.05|ENSG00000092203|chr14:21492515-21492515|T/C|missense_variant	TOX4|p.V300A|1|0.05|ENSG00000092203|chr14:21492515-21492515|T/C|missense_variant	TOX4|p.V300A|1|0.05|ENSG00000092203|chr14:21492515-21492515|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.2392883300781	2	417.216183	832.417813	0.28299	0.00011807	-1.5437	-0.00064406	-1.2607	-0.000526	417.2158950128256	87.259	1.1669	87.122	86.618	87.784	-0.13734					36	27	2	0	0	0	0.027866	1	10693	10693		31.955	0	1	34863			4561	38101	2699	2712	6096	6096					-0.005098895017681571
ATAHGFGSSL	10	Unmodified	_ATAHGFGSSL_					0	0	0			REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	REV__ENST00000497209.5_1_20:61296327-61299537:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.76385498046875	2	474.232699	946.450845	0.27332	0.00012962	0.46759	0.00022175	0.74091	0.00035136	474.2327736558407	34.875	0.53537	34.875	34.629	35.164	0					20	13	2	0	0	0	0.03519	1	2666	2666		54.776	6.8607	1	170710	+		4562	21193	2700	2713	6097	6097					-0.024522626590396612
ATAIKQHV	8	Unmodified	_ATAIKQHV_					0	0	0		ENSG00000172421|ENST00000305286|EFCAB3;nc|ENSG00000172421|Q8N7B9-2|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77984619140625	2	434.255977	866.497401	-0.71089	-0.00030871	-0.56643	-0.00024598	-1.2773	-0.00055469	434.2566334182716	38.401	0.79981	38.401	38.102	38.902	0					27	21	2	0	0	0	0.027866	1	3248	3248		29.15	0	1	189710			4563	8274	2701	2714	6098	6098					0.05881221962897598
ATAKLDKV	8	Unmodified	_ATAKLDKV_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.25823974609375	2	423.258185	844.501818	-0.48638	-0.00020586	0.65279	0.0002763	0.16641	7.0436E-05	423.2584142415599	27.098	1.3626	27.085	26.828	28.191	-0.012983					83	35	4	0	0	0	0.73796	1	1438	1438		64.207	0.901	1	3429800			4564	5772	2702	2715	6099	6099					0.07334686385809164
ATAKLDKV	8	Unmodified	_ATAKLDKV_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.25811767578125	2	423.258185	844.501818	0.049741	2.1053E-05	0.0049033	2.0754E-06	0.054645	2.3129E-05	423.2580975681547	27.321	1.0311	27.165	26.887	27.918	-0.15664					65	24	4	0	0	0	0.5947	1	1473	1473		76.774	5.4784	1	3341200			4565	5772	2702	2715	6100	6100					0.07334686385809164
ATAKRSKPS	9	Unmodified	_ATAKRSKPS_					0	0	0			REV__nc|ENSG00000116731|Q13029-4|PRDM2	REV__nc|ENSG00000116731|Q13029-4|PRDM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2952575683594	2	473.277441	944.540328	0.32359	0.00015315	4.0578	0.0019205	4.3814	0.0020736	473.27929173873014	55.2	0.70208	55.049	54.745	55.447	-0.15036					31	19	2	0	0	0	0.024405	1	6077	6077		20.947	7.9877	1	400900	+		4566	36592	2703	2716	6101	6101					0.06583992020330243
ATAKRSKPS	9	Unmodified	_ATAKRSKPS_					0	0	0			REV__nc|ENSG00000116731|Q13029-4|PRDM2	REV__nc|ENSG00000116731|Q13029-4|PRDM2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	473.277441	944.540328	-0.33477	-0.00015844	4.4236	0.0020936	4.0889	0.0019352	473.2795114874338	55.042	0.90105	54.896	54.495	55.396	-0.14609	-0.029969	0.00018442	NaN	20.947	64	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2435700	+		4567	36592	2703	2716							0.06583992020330243
ATAKRSKPS	9	Unmodified	_ATAKRSKPS_					0	0	0			REV__nc|ENSG00000116731|Q13029-4|PRDM2	REV__nc|ENSG00000116731|Q13029-4|PRDM2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	473.277441	944.540328	0.086362	4.0873E-05	4.2013	0.0019884	4.2877	0.0020293	473.27928104119087	55.09	1.0715	54.883	54.575	55.646	-0.20613	-0.042942	-2.6018E-05	NaN	20.947	71	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3551400	+		4568	36592	2703	2716							0.06583992020330243
ATAKVPGSI	9	Unmodified	_ATAKVPGSI_					0	0	0			REV__chr20:56390665-56392154|499|12.17|0.64|4.25|-|ENST00000441357|AURKA,AURKA	REV__chr20:56390665-56392154|499|12.17|0.64|4.25|-|ENST00000441357|AURKA,AURKA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.2377624511719	2	422.25036	842.486168	-0.77427	-0.00032693	-3.4587	-0.0014604	-4.233	-0.0017874	422.249176189196	32.888	0.18896	32.888	32.79	32.979	0					7	4	2	0	0	0	0.024523	1	2315	2315		21.96	0	1	61632	+		4569	19420	2704	2717	6102	6102					0.05862399868760804
ATALPLRT	8	Unmodified	_ATALPLRT_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.916748046875	2	421.758352	841.502152	0.82866	0.00034949	-0.48816	-0.00020589	0.3405	0.00014361	421.75803096647354	19.341	0.39166	19.341	19.119	19.511	0					21	7	4	0	0	0	0.027866	1	384	384		25.45	7.1258	1	289880			4570	12	2705	2718	6103	6103					0.07506106105654453
ATAMAPVRGF	10	Unmodified	_ATAMAPVRGF_					0	0	0			REV__ENST00000574977.1_1_16:71715749-71718559:-|nuORF	REV__ENST00000574977.1_1_16:71715749-71718559:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7741394042969	2	510.768394	1019.52224	-0.80617	-0.00041176	3.8408	0.0019618	3.0347	0.00155	510.76981170285654	44.823	0.35736	44.612	44.474	44.831	-0.21109					13	8	2	0	0	0	0.03519	1	4179	4179		15.642	0	1	154250	+		4571	35358	2706	2719	6104	6104					0.013255337739678907
ATAMQEGEYD	10	Unmodified	_ATAMQEGEYD_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.7286376953125	2	557.721504	1113.42845	-0.024835	-1.3851E-05	3.8024	0.0021207	3.7776	0.0021068	557.7228584107614	57.572	0.29633	57.572	57.384	57.68	0					11	7	2	0	0	0	0.03519	1	6465	6465		32.751	0	1	695620			4572	10381	2707	2720	6105	6105					-0.12372274909625958
ATANEIHFW	9	Unmodified	_ATANEIHFW_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3026123046875	2	544.761623	1087.50869	-0.3478	-0.00018947	0.33366	0.00018176	-0.014145	-7.7058E-06	544.7616449117464	63.656	0.69003	63.428	63.135	63.825	-0.22773					28	17	2	0	0	0	0.024344	1	7185	7185		54.776	20.604	1	910620			4573	3047	2708	2721	6106	6106					-0.031560007336111084
ATANEIHFW	9	Unmodified	_ATANEIHFW_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.302734375	2	544.761623	1087.50869	-0.18752	-0.00010215	-0.28909	-0.00015748	-0.4766	-0.00025964	544.7613974223673	63.731	0.6327	63.473	63.201	63.833	-0.25824					50	16	4	0	0	0	0.023837	1	7182	7182		74.255	38.637	1	928270			4574	3047	2708	2721	6107	6107					-0.031560007336111084
ATAPDSPLS	9	Unmodified	_ATAPDSPLS_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	429.73681640625	2	429.713808	857.413062	-0.44455	-0.00019103	2.6397	0.0011343	2.1952	0.00094331	429.714798293188	40.239	0.85506	40.262	39.942	40.797	0.023006					46	23	4	0	0	0	0.024405	1	3455	3455		35.618	0	1	738920	+		4575	25017	2709	2722	6108	6108					-0.021347736445136434
ATAPIVTRA	9	Unmodified	_ATAPIVTRA_					0	0	0			REV__ENST00000548804.5_1_12:57998523-57998613:+|nuORF	REV__ENST00000548804.5_1_12:57998523-57998613:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2819519042969	2	450.269084	898.523616	-0.25281	-0.00011383	0.3628	0.00016336	0.11	4.9529E-05	450.26886323438606	51.383	0.14277	51.234	51.118	51.261	-0.14916					5	3	2	0	0	0	0.024262	1	5401	5401		30.504	0	1	72461	+		4576	34884	2710	2723	6109	6109					0.07029491134358068
ATAPIVTRA	9	Unmodified	_ATAPIVTRA_					0	0	0			REV__ENST00000548804.5_1_12:57998523-57998613:+|nuORF	REV__ENST00000548804.5_1_12:57998523-57998613:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2819519042969	2	450.269084	898.523616	-0.067969	-3.0604E-05	-2.3778	-0.0010707	-2.4458	-0.0011013	450.2685801237098	51.099	0.39736	50.95	50.758	51.155	-0.14916					19	10	3	0	0	0	0.024262	1	5401	5401		30.504	0	1	1551800	+		4577	34884	2710	2723	6110	6110					0.07029491134358068
ATAQGHFQYIS	11	Unmodified	_ATAQGHFQYIS_					0	0	0			REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.5354309082031	3	408.199889	1221.57784	-1.1944	-0.00048757	-0.098177	-4.0076E-05	-1.2926	-0.00052764	408.53468263771623	21.665	0.33912	21.453	21.167	21.506	-0.2128					11	6	2	0	0	0	0.024746	1	672	672		29.245	0	1	30389	+		4578	24149	2711	2724	6111	6111					-0.024089615047159896
ATAQQQQW	8	Unmodified	_ATAQQQQW_					0	0	0			REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29205322265625	2	480.730323	959.446094	-0.1777	-8.5428E-05	-0.05213	-2.506E-05	-0.22983	-0.00011049	480.73013134435826	31.889	0.57911	31.731	31.412	31.991	-0.15772					19	13	2	0	0	0	0.027866	1	2116	2116		45.952	0	1	59587	+		4579	36895;36190	2712	2725	6112	6112					-0.035251468018145715
ATARIGLET	9	Unmodified	_ATARIGLET_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7524719238281	2	466.263999	930.513445	0.82299	0.00038373	-3.617	-0.0016865	-2.794	-0.0013028	466.2622738120391	43.622	0.28703	43.653	43.45	43.737	0.030827					11	7	2	0	0	0	0.024405	1	4034	4034		20.947	0	1	98964			4580	3858	2713	2726	6113	6113					0.04540883409140406
ATASMDSK	8	Unmodified	_ATASMDSK_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	2	405.686736	809.358918	0.052834	2.1434E-05	0.46538	0.0001888	0.51822	0.00021023	405.68724023591494	45.506	0.20357	45.358	45.279	45.483	-0.1488					6	5	2	0	0	0	0.027866	1	4417	4417		15.642	0	1	119660			4581	5443	2714	2727	6114	6114					-0.05338689067730229
ATASNVTY	8	Unmodified	_ATASNVTY_					0	0	0			REV__ENSG00000213949|ENST00000282588|ITGA1	REV__ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.5502624511719	2	413.7007	825.386848	-0.52063	-0.00021539	2.5195	0.0010423	1.9988	0.00082693	413.7014690742003	29.603	0.32207	29.603	29.37	29.692	0					11	7	2	0	0	0	0.027866	1	1819	1819		32.812	6.1195	1	36279	+		4582	28759	2715	2728	6115	6115					-0.03283042816008219
ATAWRQAE	8	Unmodified	_ATAWRQAE_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.75372314453125	2	466.732866	931.451179	-0.51487	-0.00024031	4.3033	0.0020085	3.7884	0.0017682	466.73478157165005	23.559	3.2463	23.559	21.584	24.83	0					111	72	2	0	0	0	0.027866	1	941	941		50.025	11.003	1	175390	+		4583	20271	2716	2729	6116	6116					-0.017288429392010585
ATCNCDYN	8	Unmodified	_ATCNCDYN_					0	0	0		nc|ENSG00000116690|Q92954-6|PRG4;ENSG00000116690|ENST00000445192|PRG4;nc|ENSG00000116690|Q92954-3|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2427062988281	2	452.152203	902.289852	-0.042221	-1.909E-05	3.2735	0.0014801	3.2313	0.001461	452.1544021235264	53.959	0.3555	53.812	53.566	53.921	-0.14723					13	9	2	0	0	0	0.027866	1	5851	5851		17.365	10.172	1	117300			4584	3566	2717	2730	6117	6117					-0.16520096358965475
ATDAAIRVW	9	Unmodified	_ATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.772216796875	2	501.771991	1001.52943	-0.83094	-0.00041694	0.097723	4.9035E-05	-0.73321	-0.00036791	501.77231475665525	55.502	0.73727	55.346	55.046	55.783	-0.15656					86	20	6	0	0	0	0.013094	3	5975	5954;5965;5975		171.38	63.297	1	4003200			4585	9269	2718	2731	6118;6119;6120	6120					0.028725896460287004
ATDAAIRVW	9	Unmodified	_ATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.7724609375	2	501.771991	1001.52943	-0.19991	-0.00010031	0.0046109	2.3136E-06	-0.1953	-9.7995E-05	501.7718963577605	55.572	0.72559	55.356	55.046	55.772	-0.21607					54	20	4	0	0	0	0.015901	2	5976	5976;5986		157.33	49.242	1	4243000			4586	9269	2718	2731	6121;6122	6121					0.028725896460287004
ATDAAIRVW	9	Unmodified	_ATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7718505859375	2	501.771991	1001.52943	-0.98018	-0.00049183	0.79977	0.0004013	-0.18042	-9.0527E-05	501.77231269621325	55.556	0.74503	55.341	55.07	55.815	-0.21551					63	20	4	0	0	0	0.015901	3	5968	5958;5968;5983		157.33	61.139	1	3717100			4587	9269	2718	2731	6123;6124;6125	6124					0.028725896460287004
ATDAAIRVW	9	Unmodified	_ATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.771991	1001.52943	0.66709	0.00033473	-0.030744	-1.5427E-05	0.63635	0.0003193	501.7703839155118	55.246	0.20364	55.246	55.149	55.353	0	-0.075994	-0.00036205	NaN	171.38	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48040			4588	9269	2718	2731							0.028725896460287004
ATDFKFAMY	9	Oxidation (M)	_ATDFKFAM(Oxidation (M))Y_		ATDFKFAM(1)Y		ATDFKFAM(85)Y	0	0	1		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.2530517578125	2	555.252243	1108.48993	-0.71297	-0.00039588	1.2156	0.00067496	0.50262	0.00027908	555.2524330830829	57.397	0.93513	57.23	56.751	57.686	-0.1672					118	24	8	0	0	0	0.22902	2	6260	6260;6270		85.161	26.379	1	2345200			4589	3714	2719	2732	6126;6127	6126		143			-0.05997298419697472
ATDFKFAMY	9	Oxidation (M)	_ATDFKFAM(Oxidation (M))Y_		ATDFKFAM(1)Y		ATDFKFAM(85)Y	0	0	1		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.25244140625	2	555.252243	1108.48993	0.16481	9.151E-05	-0.35543	-0.00019736	-0.19063	-0.00010585	555.2519197743009	57.379	0.66092	57.177	56.926	57.587	-0.20208					32	17	2	0	0	0	0.22902	1	6270	6270		85.161	28.44	1	2257300			4590	3714	2719	2732	6128	6128		143			-0.05997298419697472
ATDFKFAMY	9	Oxidation (M)	_ATDFKFAM(Oxidation (M))Y_					0	0	1		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.252243	1108.48993	-0.14721	-8.1737E-05	-1.2175	-0.00067602	-1.3647	-0.00075775	555.2514615979237	57.153	0.30219	57.153	57.003	57.305	0	-0.040207	-0.00091202	NaN	85.161	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153490			4591	3714	2719	2732				143			-0.05997298419697472
ATDFKFAMY	9	Oxidation (M)	_ATDFKFAM(Oxidation (M))Y_					0	0	1		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.252243	1108.48993	-0.20717	-0.00011503	-3.1143	-0.0017292	-3.3215	-0.0018443	555.250231480262	57.119	0.30324	57.214	56.978	57.281	0.095306	0.020432	-0.0030185	NaN	85.161	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82936			4592	3714	2719	2732				143			-0.05997298419697472
ATDFKFAMY	9	Unmodified	_ATDFKFAMY_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2550659179688	2	547.254785	1092.49502	-0.38892	-0.00021284	0.1305	7.1418E-05	-0.25842	-0.00014142	547.2547186898344	66.049	0.79655	65.808	65.542	66.338	-0.24144					47	19	4	0	0	0	0.16638	3	7567	7556;7567;7579		95.815	46.374	1	3238200			4593	3714	2719	2733	6129;6130;6131	6130					-0.04752994557065904
ATDFKFAMY	9	Unmodified	_ATDFKFAMY_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2549438476562	2	547.254785	1092.49502	-0.85065	-0.00046552	0.5337	0.00029207	-0.31695	-0.00017345	547.2548828825442	65.989	0.80045	65.776	65.505	66.306	-0.21327					50	19	5	0	0	0	0.1158	4	7572	7548;7560;7572;7586		107.01	46.036	1	2972300			4594	3714	2719	2733	6132;6133;6134;6135	6134					-0.04752994557065904
ATDFKFAMY	9	Unmodified	_ATDFKFAMY_					0	0	0		ENST00000536795.1_1_12:4387934-4398180:+|nuORF;ENSG00000118971|ENST00000261254|CCND2	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENST00000536795.1_1_12:4387934-4398180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.2550048828125	2	547.254785	1092.49502	-0.77016	-0.00042147	0.4144	0.00022678	-0.35576	-0.00019469	547.254918500746	66.072	0.82495	65.821	65.52	66.345	-0.25112					47	20	4	0	0	0	0.18994	3	7542	7542;7553;7566		90.601	41.159	1	2865600			4595	3714	2719	2733	6136;6137;6138	6136					-0.04752994557065904
ATDGKVLLW	9	Unmodified	_ATDGKVLLW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.7842712402344	2	501.784567	1001.55458	0.05526	2.7729E-05	-0.75573	-0.00037921	-0.70047	-0.00035148	501.7839443871086	63.083	0.88304	62.862	62.489	63.372	-0.22097					49	22	3	0	0	0	0.027092	3	7096	7084;7096;7107		143.89	67.113	1	2332600			4596	3730	2720	2734	6139;6140;6141	6140					0.05386644448606148
ATDGKVLLW	9	Unmodified	_ATDGKVLLW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.7845764160156	2	501.784567	1001.55458	-0.43052	-0.00021603	0.11442	5.7414E-05	-0.3161	-0.00015862	501.7841104950044	63.06	0.73803	62.876	62.573	63.311	-0.18386					43	19	3	0	0	0	0.043667	3	7103	7081;7092;7103		131.03	48.791	1	2503700			4597	3730	2720	2734	6142;6143;6144	6144					0.05386644448606148
ATDGKVLLW	9	Unmodified	_ATDGKVLLW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7837829589844	2	501.784567	1001.55458	-0.20453	-0.00010263	0.091426	4.5876E-05	-0.11311	-5.6756E-05	501.78412106519426	63.197	0.81959	62.939	62.606	63.425	-0.25824					45	20	3	0	0	0	0.03201	3	7101	7090;7101;7114		139.97	52.216	1	2321100			4598	3730	2720	2734	6145;6146;6147	6146					0.05386644448606148
ATDGPESSLI	10	Unmodified	_ATDGPESSLI_					0	0	0			REV__nc|ENSG00000211749|A0A0A0MS06|TRBV23-1	REV__nc|ENSG00000211749|A0A0A0MS06|TRBV23-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.29754638671875	2	495.242929	988.471305	-0.3151	-0.00015605	2.4533	0.001215	2.1382	0.0010589	495.2445952786465	54.526	0.27007	54.526	54.321	54.591	0					12	7	2	0	0	0	0.03519	1	5938	5938		76.774	21.998	1	177180	+		4599	37103	2721	2735	6148	6148					-0.023391367898966564
ATDIDKNGY	9	Unmodified	_ATDIDKNGY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7352294921875	2	498.735271	995.45599	-0.52852	-0.00026359	2.1876	0.001091	1.6591	0.00082743	498.7365293868057	31.167	0.54483	31.015	30.724	31.269	-0.15231					47	13	5	0	0	0	0.32811	1	2021	2021		71.877	5.4482	1	3544800			4600	5244	2722	2736	6149	6149					-0.041920035870930406
ATDINGDDY	9	Unmodified	_ATDINGDDY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.2013244628906	2	492.201261	982.38797	-0.52263	-0.00025724	0.26442	0.00013015	-0.25821	-0.00012709	492.2013630539553	42.129	0.92381	42.006	41.68	42.604	-0.12299					79	24	5	0	0	0	0.014034	2	3774	3762;3774		166.68	87.228	1	8189000			4601	5244	2723	2737	6150;6151	6151					-0.10392873237753975
ATDINGDDY	9	Unmodified	_ATDINGDDY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2010192871094	2	492.201261	982.38797	-0.35173	-0.00017312	0.17235	8.483E-05	-0.17938	-8.829E-05	492.201301065861	42.289	1.1899	42.057	41.733	42.923	-0.23186					79	31	5	0	0	0	0.016758	3	3773	3773;3785;3801		153.04	70.731	1	8569500			4602	5244	2723	2737	6152;6153;6154	6152					-0.10392873237753975
ATDINGDDY	9	Unmodified	_ATDINGDDY_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.201416015625	2	492.201261	982.38797	-0.082832	-4.077E-05	-0.38654	-0.00019026	-0.46937	-0.00023103	492.2010301961373	42.214	1.2965	41.984	41.688	42.985	-0.23029					84	34	4	0	0	0	0.014034	3	3772	3760;3772;3783		166.68	81.763	1	10232000			4603	5244	2723	2737	6155;6156;6157	6156					-0.10392873237753975
ATDKDNGILLY	11	Unmodified	_ATDKDNGILLY_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.8195190429688	2	611.819335	1221.62412	-1.6186	-0.00099029	2.0259	0.0012395	0.40725	0.00024916	611.8206770665371	57.944	0.53957	57.766	57.319	57.859	-0.17775					29	13	3	0	0	0	0.70358	1	6350	6350		63.534	4.7519	1	1718100			4604	9328	2724	2738	6158	6158					0.02217058606743194
ATDKDNGILLY	11	Unmodified	_ATDKDNGILLY_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	611.819335	1221.62412	-0.26962	-0.00016496	0.64052	0.00039188	0.3709	0.00022692	611.8196076153457	57.916	0.50646	57.726	57.407	57.913	-0.19017	-0.043374	-0.00043942	NaN	63.534	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481000			4605	9328	2724	2738							0.02217058606743194
ATDKDNGILLY	11	Unmodified	_ATDKDNGILLY_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	611.819335	1221.62412	-0.38496	-0.00023552	0.81581	0.00049913	0.43085	0.0002636	611.819717819666	58.049	0.5517	57.816	57.543	58.094	-0.23363	0.046478	-0.00022494	NaN	63.534	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1281600			4606	9328	2724	2738							0.02217058606743194
ATDLDVANFY	10	Unmodified	_ATDLDVANFY_					0	0	0		ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.7644653320312	2	564.764029	1127.5135	0.34795	0.00019651	-0.21157	-0.00011949	0.13638	7.7024E-05	564.7638140465955	76.928	0.46338	76.66	76.424	76.887	-0.26806					38	10	5	0	0	0	0.61732	1	9127	9127		75.043	17.232	1	1573500			4607	5551	2725	2739	6159	6159					-0.045151613815278324
ATDLDVANFY	10	Unmodified	_ATDLDVANFY_					0	0	0		ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.7645874023438	2	564.764029	1127.5135	0.47145	0.00026626	-0.51162	-0.00028895	-0.040175	-2.269E-05	564.7636946840034	76.918	0.46427	76.667	76.399	76.863	-0.25163					43	10	6	0	0	0	1.0122	1	9150	9150		44.377	10.862	1	1614300			4608	5551	2725	2739	6160	6160					-0.045151613815278324
ATDLDVANFY	10	Unmodified	_ATDLDVANFY_					0	0	0		ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	ENSG00000142252|ENST00000270257|GEMIN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.7646484375	2	564.764029	1127.5135	-0.36088	-0.00020381	0.6072	0.00034292	0.24631	0.00013911	564.7642830202146	76.749	0.59022	76.581	76.309	76.899	-0.16854					51	13	5	0	0	0	0.83673	1	9099	9099		58.23	3.4536	1	1736200			4609	5551	2725	2739	6161	6161					-0.045151613815278324
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	OPSCC_40_ClassI_Rep-1	4	534.2711791992188	2	534.272021	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.053	1	45.956	45.456	46.456	-0.096649								0	0	0	0.1192	1	4415	4415		88.177	42.205	1				4610	981	2726	2740	6162	6162					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	OPSCC_40_ClassI_Rep-1	4	534.2714233398438	2	534.272021	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.123	1	46.026	45.526	46.526	-0.096649								0	0	0	0.16394	1	4426	4426		78.264	35.4	1				4611	981	2726	2740	6163	6163					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	OPSCC_40_ClassI_Rep-2	5	534.2718505859375	2	534.272021	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.311	1	46.05	45.55	46.55	-0.26118								0	0	0	0.07376	1	4440	4440		98.582	47.389	1				4612	981	2726	2740	6164	6164					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	OPSCC_40_ClassI_Rep-2	5	534.2714233398438	2	534.272021	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.376	1	46.115	45.615	46.615	-0.26118								0	0	0	0.3976	1	4450	4450		61.691	24.532	1				4613	981	2726	2740	6165	6165					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	OPSCC_40_ClassI_Rep-3	6	534.2713012695312	2	534.272021	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.158	1	45.956	45.456	46.456	-0.20226								0	0	0	0.07376	1	4419	4419		98.582	47.389	1				4614	981	2726	2740	6166	6166					-0.0011145514461077255
ATDLTREVY	9	Unmodified	_ATDLTREVY_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MSMS	OPSCC_40_ClassI_Rep-3	6	534.2706909179688	2	534.272021	1066.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.235	1	46.033	45.533	46.533	-0.20226								0	0	0	0.16394	1	4431	4431		78.264	30.348	1				4615	981	2726	2740	6167	6167					-0.0011145514461077255
ATDPDDTHAY	10	Unmodified	_ATDPDDTHAY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.225341796875	2	553.225268	1104.43598	-0.49113	-0.0002717	0.076041	4.2068E-05	-0.41508	-0.00022964	553.2253251222329	30.884	0.8221	30.642	30.326	31.149	-0.24109					63	19	5	0	0	0	0.0027948	4	2015	1990;2002;2015;2030		186.09	121.88	1	9956400			4616	3147	2727	2741	6168;6169;6170;6171	6170					-0.11205799317713172
ATDPDDTHAY	10	Unmodified	_ATDPDDTHAY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.2249145507812	2	553.225268	1104.43598	-0.59609	-0.00032977	0.04114	2.276E-05	-0.55495	-0.00030701	553.2253087704916	30.741	0.78576	30.563	30.283	31.069	-0.17817					62	18	5	0	0	0	0.0063069	4	1977	1966;1977;1989;2003		176.41	99.564	1	9429300			4617	3147	2727	2741	6172;6173;6174;6175	6173					-0.11205799317713172
ATDPDDTHAY	10	Unmodified	_ATDPDDTHAY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.224853515625	2	553.225268	1104.43598	-0.23073	-0.00012765	-0.28063	-0.00015525	-0.51136	-0.0002829	553.2251002405139	30.641	0.869	30.492	30.14	31.009	-0.14952					70	20	5	0	0	0	9.5114E-06	4	1947	1935;1947;1959;1972		224.43	135.78	1	7828000			4618	3147	2727	2741	6176;6177;6178;6179	6177					-0.11205799317713172
ATDPVTGDLY	10	Unmodified	_ATDPVTGDLY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2506103515625	2	526.250754	1050.48696	-0.95907	-0.00050471	1.0014	0.00052701	0.04237	2.2297E-05	526.2510842402011	61.952	0.77529	61.774	61.453	62.229	-0.17782					34	19	2	0	0	0	0.74632	2	6955	6955;6968		64.207	5.4253	1	2538000			4619	10601	2728	2742	6180;6181	6180					-0.03626850272848969
ATDPVTGDLY	10	Unmodified	_ATDPVTGDLY_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2514038085938	2	526.250754	1050.48696	-0.073965	-3.8924E-05	0.61512	0.00032371	0.54115	0.00028478	526.2506619527213	62.108	0.82606	61.85	61.464	62.29	-0.25725					47	20	4	0	0	0	1.0393	1	6975	6975		40.778	4.3314	1	2365500			4620	10601	2728	2742	6182	6182					-0.03626850272848969
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		ENST00000539304.1_1_12:7344181-7354515:+|nuORF;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	609.7570190429688	2	609.756735	1217.49892	-0.84034	-0.0005124	0.67622	0.00041233	-0.16412	-0.00010008	609.7571082737303	53.169	0.89383	53.041	52.713	53.607	-0.12706					72	23	4	0	0	0	0.10464	2	5551	5540;5551		109.48	35.223	1	5960400			4621	5313	2729	2743	6183;6184	6184					-0.10113233529659738
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		ENST00000539304.1_1_12:7344181-7354515:+|nuORF;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	609.7564697265625	2	609.756735	1217.49892	-0.14235	-8.6801E-05	-0.16533	-0.00010081	-0.30768	-0.00018761	609.7566122828096	53.362	0.92993	53.104	52.803	53.733	-0.25838					74	25	4	0	0	0	0.041068	2	5569	5569;5578		132.76	47.842	1	5782300			4622	5313	2729	2743	6185;6186	6185					-0.10113233529659738
ATDRWYDEY	9	Unmodified	_ATDRWYDEY_					0	0	0		ENST00000539304.1_1_12:7344181-7354515:+|nuORF;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	609.7562255859375	2	609.756735	1217.49892	-0.29826	-0.00018187	-0.065653	-4.0032E-05	-0.36391	-0.0002219	609.7566431795108	53.134	0.83868	52.944	52.591	53.429	-0.18982					73	21	4	0	0	0	0.071379	3	5531	5531;5542;5555		120.87	38.628	1	6365800			4623	5313	2729	2743	6187;6188;6189	6187					-0.10113233529659738
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.280029296875	2	562.28018	1122.54581	-0.7427	-0.00041761	0.40727	0.000229	-0.33543	-0.00018861	562.280267406345	39.26	0.71365	39.096	38.862	39.576	-0.16459					55	18	5	0	0	0	0.03201	2	3308	3308;3318		139.97	60.031	1	3665100			4624	1558	2730	2744	6190;6191	6190					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2797241210938	2	562.28018	1122.54581	-0.49283	-0.00027711	0.20986	0.000118	-0.28296	-0.0001591	562.2801660196183	39.424	0.68682	39.2	38.857	39.543	-0.22311					58	17	5	0	0	0	0.014988	2	3319	3319;3329		161.9	81.959	1	3535200			4625	1558	2730	2744	6192;6193	6192					-0.010563291878725067
ATDYHVRVY	9	Unmodified	_ATDYHVRVY_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2805786132812	2	562.28018	1122.54581	-0.19964	-0.00011226	-0.2041	-0.00011476	-0.40374	-0.00022702	562.27998957217	39.406	0.78827	39.18	38.839	39.627	-0.2257					63	20	4	0	0	0	0.03201	2	3324	3313;3324		139.97	47.78	1	3351900			4626	1558	2730	2744	6194;6195	6195					-0.010563291878725067
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant	ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	612.7747802734375	2	612.78021	1223.54587	-0.44302	-0.00027147	0.28554	0.00017498	-0.15748	-9.6499E-05	612.7803021157339	49.333	0.79143	49.054	48.718	49.51	-0.27977					63	20	4	0	0	0	0.41983	1	4939	4939		96.665	47.224	1	2468600			4627	5358	2731	2745	6196	6196					-0.056963739785032885
ATEDPWKTNY	10	Unmodified	_ATEDPWKTNY_					0	0	0		ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant;ENSG00000139684|ENST00000378720|ESD	ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant	ESD|p.D108N|1|0.31|ENSG00000139684|chr13:46782726-46782726|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	612.78021	1223.54587	-1.9585	-0.0012001	2.078	0.0012734	0.11954	7.3251E-05	612.7814016826172	48.961	0.83354	48.861	48.544	49.377	-0.1008	-0.096503	0.00091941	NaN	96.665	60	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2290300			4628	5358	2731	2745							-0.056963739785032885
ATEESLILP	9	Unmodified	_ATEESLILP_					0	0	0		ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2870788574219	2	486.76604	971.517527	-0.22121	-0.00010768	1.5823	0.00077019	1.361	0.00066251	486.7662895142761	28.746	0.58343	28.594	28.283	28.867	-0.15182					24	13	3	0	0	0	0.024466	1	1708	1708		33.516	1.5607	1	275540			4629	6948	2732	2746	6197	6197					0.030629281121946406
ATEFIMNEY	9	Unmodified	_ATEFIMNEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.2431030273438	2	559.247157	1116.47976	-0.52175	-0.00029179	1.1014	0.00061596	0.57965	0.00032417	559.2475220590906	69.889	0.95671	69.622	69.164	70.121	-0.26724					58	22	4	0	0	0	0.48817	1	8116	8116		60.118	4.6141	1	1631300			4630	9952	2733	2747	6198	6198					-0.07381906144928507
ATEFIMNEY	9	Unmodified	_ATEFIMNEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.247157	1116.47976	0.038479	2.1519E-05	0.41779	0.00023365	0.45627	0.00025517	559.2471566430758	69.831	1.1119	69.58	68.991	70.103	-0.25063	-0.012643	-0.00018091	NaN	60.118	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1735100			4631	9952	2733	2747							-0.07381906144928507
ATEFIMNEY	9	Unmodified	_ATEFIMNEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	559.247157	1116.47976	-0.19038	-0.00010647	0.35723	0.00019978	0.16684	9.3307E-05	559.2472902855054	69.799	0.74146	69.577	69.307	70.048	-0.22245	-0.016138	-0.00024865	NaN	60.118	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1873900			4632	9952	2733	2747							-0.07381906144928507
ATEIPAVVN	9	Unmodified	_ATEIPAVVN_					0	0	0		ENST00000507419.5_1_5:133984116-133984272:-|nuORF	ENST00000507419.5_1_5:133984116-133984272:-|nuORF	ENST00000507419.5_1_5:133984116-133984272:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.2643127441406	2	457.2531	912.491647	0.48634	0.00022238	-1.4875	-0.00068018	-1.0012	-0.0004578	457.25277340037024	81.858	0.1711	81.629	81.479	81.65	-0.2289					5	3	2	0	0	0	0.024292	1	9830	9830		40.778	1.5253	1	21940			4633	15761	2734	2748	6199	6199					0.031900786605774556
ATELTHEDY	9	Unmodified	_ATELTHEDY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7383422851562	2	539.738011	1077.46147	-0.10029	-5.4129E-05	-0.033405	-1.803E-05	-0.13369	-7.2159E-05	539.737914851108	36.925	1.1333	36.732	36.176	37.309	-0.193					70	28	5	0	0	0	0.012965	4	2922	2911;2922;2934;2946		221.53	144.69	1	5361400			4634	7485	2735	2749	6200;6201;6202;6203	6201					-0.0741632479528107
ATELTHEDY	9	Unmodified	_ATELTHEDY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7381591796875	2	539.738011	1077.46147	-0.73937	-0.00039907	0.53166	0.00028696	-0.20771	-0.00011211	539.7382305687681	36.913	0.82599	36.693	36.405	37.231	-0.2195					64	20	5	0	0	0	0.015527	3	2921	2909;2921;2932		193.98	114.27	1	5320600			4635	7485	2735	2749	6204;6205;6206	6205					-0.0741632479528107
ATELTHEDY	9	Unmodified	_ATELTHEDY_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.7378540039062	2	539.738011	1077.46147	0.19475	0.00010512	-0.52478	-0.00028324	-0.33002	-0.00017813	539.7377057574155	36.857	0.94999	36.648	36.323	37.273	-0.2092					67	23	4	0	0	0	0.012965	4	2891	2891;2901;2915;2929		204.1	119.18	1	5372300			4636	7485	2735	2749	6207;6208;6209;6210	6207					-0.0741632479528107
ATEPPPVLHL	10	Unmodified	_ATEPPPVLHL_					0	0	0		ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8130493164062	2	537.303124	1072.5917	-0.0068595	-3.6856E-06	0.14328	7.6984E-05	0.13642	7.3298E-05	538.305188517165	71.662	0.98534	71.662	71.185	72.17	0					73	25	5	0	0	0	0.03519	1	8638	8638		38.806	19.703	1	1942800			4637	6633	2736	2750	6211	6211					0.058303159943761784
ATESVSLYYY	10	Unmodified	_ATESVSLYYY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	598.2796630859375	2	598.279512	1194.54447	-0.61347	-0.00036703	0.71038	0.00042501	0.096912	5.7981E-05	598.2797649232401	70.288	0.53268	70.02	69.704	70.237	-0.26737					37	12	4	0	0	0	0.36026	1	8171	8171		102.77	40.666	1	1503200			4638	1354	2737	2751	6212	6212					-0.04502008067288443
ATESVSLYYY	10	Unmodified	_ATESVSLYYY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	598.2800903320312	2	598.279512	1194.54447	-0.56186	-0.00033615	0.56531	0.00033822	0.0034571	2.0683E-06	598.2796908480725	70.279	0.52921	70.028	69.691	70.22	-0.25063					38	12	4	0	0	0	0.27536	1	8177	8177		111.65	58.559	1	1417000			4639	1354	2737	2751	6213	6213					-0.04502008067288443
ATESVSLYYY	10	Unmodified	_ATESVSLYYY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.279541015625	2	598.279512	1194.54447	-0.027027	-1.6169E-05	0.12004	7.1815E-05	0.093009	5.5645E-05	598.2794758011117	70.2	0.48529	69.985	69.688	70.174	-0.21425					35	11	4	0	0	0	0.32474	2	8156	8156;8168		106.42	54.887	1	1607300			4640	1354	2737	2751	6214;6215	6214					-0.04502008067288443
ATEYKNEEY	9	Unmodified	_ATEYKNEEY_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1;YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant;YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.7510986328125	2	573.751118	1145.48768	-0.3504	-0.00020104	-0.30974	-0.00017771	-0.66014	-0.00037875	573.7509635521309	30.547	1.04	30.303	29.991	31.031	-0.24415					67	24	4	0	0	0	0.013337	4	1954	1946;1954;1966;1978		185.55	119.12	1	10317000			4641	1763;38166	2738	2752	6216;6217;6218;6219	6217					-0.0792405562381191
ATEYKNEEY	9	Unmodified	_ATEYKNEEY_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1;YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant;YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.7512817382812	2	573.751118	1145.48768	-0.82025	-0.00047062	0.077411	4.4415E-05	-0.74283	-0.0004262	573.7511539609326	30.407	1.1673	30.228	29.824	30.991	-0.17818					84	27	5	0	0	0	0.013065	4	1919	1919;1929;1941;1953		176.44	119.72	1	9694100			4642	1763;38166	2738	2752	6220;6221;6222;6223	6220					-0.0792405562381191
ATEYKNEEY	9	Unmodified	_ATEYKNEEY_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1;YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant;YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1;YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.7510375976562	2	573.751118	1145.48768	-0.23429	-0.00013442	-0.6589	-0.00037804	-0.89319	-0.00051247	573.7507416838014	30.348	1.2133	30.199	29.835	31.048	-0.14952					85	28	5	0	0	0	0.013065	5	1885	1885;1894;1905;1917;1931		185.55	108.78	1	9027300			4643	1763;38166	2738	2752	6224;6225;6226;6227;6228	6224					-0.0792405562381191
ATFIVTNYW	9	Unmodified	_ATFIVTNYW_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.7816162109375	2	557.782025	1113.5495	0.043066	2.4021E-05	0.3173	0.00017698	0.36036	0.000201	557.7820697435441	86.425	0.95743	86.239	85.816	86.773	-0.18696					55	21	4	0	0	0	0.28753	2	10480	10480;10492		77.318	31.345	1	672450			4644	6347	2739	2753	6229;6230	6229					-0.002736594140287707
ATFIVTNYW	9	Unmodified	_ATFIVTNYW_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.7808227539062	2	557.782025	1113.5495	0.6314	0.00035218	-0.46401	-0.00025881	0.16739	9.3369E-05	557.7816459987995	86.329	0.7846	86.187	85.841	86.626	-0.14218					58	17	4	0	0	0	0.31037	2	10477	10477;10487		74.255	13.296	1	619670			4645	6347	2739	2753	6231;6232	6231					-0.002736594140287707
ATFIVTNYW	9	Unmodified	_ATFIVTNYW_					0	0	0		ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	ENST00000575002.5_1_16:4517092-4524613:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.7816772460938	2	557.782025	1113.5495	0.032311	1.8022E-05	0.17309	9.6548E-05	0.2054	0.00011457	557.7819791361528	86.344	0.7426	86.207	85.875	86.618	-0.13734					42	16	3	0	0	0	0.31037	1	10467	10467		74.255	26.598	1	702540			4646	6347	2739	2753	6233	6233					-0.002736594140287707
ATFQHSVLD	9	Unmodified	_ATFQHSVLD_					0	0	0			REV__ENST00000517946.1_1_9:26869929-26887469:-|nuORF	REV__ENST00000517946.1_1_9:26869929-26887469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3021545410156	2	509.253631	1016.49271	-0.053945	-2.7471E-05	1.7183	0.00087503	1.6643	0.00084755	509.25430936191333	55.031	1.5067	55.031	54.492	55.999	0					57	42	2	0	0	0	0.024313	1	6160	6160		51.193	4.4263	1	405070	+		4647	34223	2740	2754	6234	6234					-0.014877069705221402
ATFVGSRQW	9	Unmodified	_ATFVGSRQW_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2691650390625	2	526.269616	1050.52468	0.10625	5.5917E-05	-0.41005	-0.0002158	-0.3038	-0.00015988	526.2691394143	49.385	0.57249	49.202	48.921	49.494	-0.18206					35	14	4	0	0	0	0.062622	1	4957	4957		124.08	52.784	1	1350600			4648	2996	2741	2755	6235	6235					0.001437055032738499
ATFVGSRQW	9	Unmodified	_ATFVGSRQW_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.269616	1050.52468	-0.58605	-0.00030842	0.22636	0.00011912	-0.3597	-0.0001893	526.269375221185	49.244	0.57432	49.143	48.841	49.416	-0.1008	-0.071342	0.00040998	NaN	124.08	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1116700			4649	2996	2741	2755							0.001437055032738499
ATFVGSRQW	9	Unmodified	_ATFVGSRQW_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.269616	1050.52468	-0.1314	-6.9154E-05	-0.10083	-5.3065E-05	-0.23224	-0.00012222	526.2693115860603	49.578	0.53544	49.298	49.011	49.547	-0.27977	0.083688	6.5606E-05	NaN	124.08	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1305900			4650	2996	2741	2755							0.001437055032738499
ATGAKVRVQ	9	Unmodified	_ATGAKVRVQ_					0	0	0		ENST00000551286.1_2_12:56708726-56709700:-|nuORF;ENST00000547423.5_3_12:56708731-56709751:-|nuORF	ENST00000551286.1_2_12:56708726-56709700:-|nuORF	ENST00000551286.1_2_12:56708726-56709700:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7586669921875	2	465.279983	928.545414	-0.50879	-0.00023673	0.50133	0.00023326	-0.0074589	-3.4705E-06	465.28096487876064	53.683	0.18273	53.535	53.383	53.566	-0.14724					6	4	2	0	0	0	0.024405	1	5776	5776		35.618	0	1	67516			4651	16532	2742	2756	6236	6236					0.07828295882950442
ATGAWNWLI	9	Unmodified	_ATGAWNWLI_					0	0	0		ENSG00000205423|ENST00000427478|CNEP1R1;nc|ENSG00000205423|Q8N9A8-2|CNEP1R1	ENSG00000205423|ENST00000427478|CNEP1R1	ENSG00000205423|ENST00000427478|CNEP1R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2997436523438	2	516.269084	1030.52362	-0.29439	-0.00015198	2.717	0.0014027	2.4226	0.0012507	516.2705072630315	104.14	0.21483	104.14	104.03	104.24	0					5	4	2	0	0	0	0.022756	1	13352	13352		58.782	0	1	16607			4652	10427	2743	2757	6237	6237					0.009574911343861459
ATGCGRLY	8	Unmodified	_ATGCGRLY_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.7037658691406	2	420.705263	839.395972	-0.28404	-0.0001195	-3.4257	-0.0014412	-3.7098	-0.0015607	420.70369750425516	33.661	0.91807	33.461	33.209	34.127	-0.20019					54	23	4	0	0	0	0.93274	1	2405	2405		47.916	5.4411	1	4228800	+		4653	21569	2744	2758	6238	6238					-0.030149727313187213
ATGCGRLY	8	Unmodified	_ATGCGRLY_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.70391845703125	2	420.705263	839.395972	-0.90486	-0.00038068	-2.9232	-0.0012298	-3.828	-0.0016105	420.70393022824857	33.664	1.1484	33.498	33.195	34.344	-0.16565					70	28	4	0	0	0	0.81662	1	2397	2397		57.811	15.337	1	5168400	+		4654	21569	2744	2758	6239	6239					-0.030149727313187213
ATGKLFKQQ	9	Unmodified	_ATGKLFKQQ_					0	0	0			REV__ENST00000401035.7_3_1:78395004-78395145:+|nuORF	REV__ENST00000401035.7_3_1:78395004-78395145:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.32366943359375	2	510.795466	1019.57638	-0.32949	-0.0001683	3.2284	0.001649	2.8989	0.0014807	510.7971392159846	20.465	0.78907	20.241	19.973	20.762	-0.22344					23	15	2	0	0	0	0.024447	1	565	565		32.812	1.2826	1	25510	+		4655	31859	2745	2759	6240	6240					0.06737449197180467
ATGKLFKQQ	9	Unmodified	_ATGKLFKQQ_					0	0	0			REV__ENST00000401035.7_3_1:78395004-78395145:+|nuORF	REV__ENST00000401035.7_3_1:78395004-78395145:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.795466	1019.57638	0.028997	1.4811E-05	2.9656	0.0015148	2.9946	0.0015296	510.7969284826748	20.365	0.68424	20.197	19.955	20.639	-0.16774	-0.043805	0.0001382	NaN	32.812	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24377	+		4656	31859	2745	2759							0.06737449197180467
ATGKLFKQQ	9	Unmodified	_ATGKLFKQQ_					0	0	0			REV__ENST00000401035.7_3_1:78395004-78395145:+|nuORF	REV__ENST00000401035.7_3_1:78395004-78395145:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.795466	1019.57638	0.63831	0.00032605	2.3086	0.0011792	2.947	0.0015053	510.7965134887862	20.48	0.68983	20.284	20.04	20.73	-0.19577	0.043395	-0.00053296	NaN	32.812	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18072	+		4657	31859	2745	2759							0.06737449197180467
ATGKTVISYG	10	Unmodified	_ATGKTVISYG_					0	0	0		ENSG00000172377|ENST00000641439|OR9I1	ENSG00000172377|ENST00000641439|OR9I1	ENSG00000172377|ENST00000641439|OR9I1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.77099609375	2	498.771657	995.528761	-0.13305	-6.6362E-05	-0.68672	-0.00034252	-0.81977	-0.00040888	498.7712153680745	102.24	1.7715	102.24	101.86	103.63	0					91	41	3	0	0	0	1.0236	1	13114	13114		42.864	3.6114	1	321140			4658	8271	2746	2760	6241	6241					0.030817502063200664
ATGPAKSPNFP	11	Unmodified	_ATGPAKSPNFP_					0	0	0			REV__ENST00000455321.1_1_10:52486845-52487529:-|nuORF	REV__ENST00000455321.1_1_10:52486845-52487529:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.78466796875	2	543.782556	1085.55056	2.935	0.001596	1.5779	0.00085801	4.5128	0.002454	543.7829883632025	16.575	0.46167	16.575	16.413	16.874	0					32	15	3	0	0	0	1.0238	1	72	72		31.53	1.0262	1	75978	+		4659	25718	2747	2761	6242	6242					0.01120554954900399
ATGPDTRPPS	10	Unmodified	_ATGPDTRPPS_					0	0	0			REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.79010009765625	2	499.748713	997.482873	0.43419	0.00021699	-3.8129	-0.0019055	-3.3787	-0.0016885	499.7465796905309	72.948	1.6812	72.666	71.807	73.489	-0.28124					53	42	2	0	0	0	0.03519	1	8937	8937		11.636	0	1	245000	+		4660	32164	2748	2762	6243	6243					-0.015968949759098905
ATGTGKLPGL	10	Unmodified	_ATGTGKLPGL_					0	0	0			REV__ENST00000462722.5_1_9:131598322-131644289:-|nuORF	REV__ENST00000462722.5_1_9:131598322-131644289:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2394104003906	2	457.768917	913.523281	-0.23835	-0.00010911	-0.8328	-0.00038123	-1.0712	-0.00049034	457.7681795242877	33.301	0.61034	33.301	32.979	33.59	0					32	16	3	0	0	0	0.03519	1	2431	2431		21.96	9.753	1	708240	+		4661	32912	2749	2763	6244	6244					0.06306071414508096
ATGTLLSVI	9	Unmodified	_ATGTLLSVI_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-3|USP43	REV__nc|ENSG00000154914|Q70EL4-3|USP43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.75262451171875	2	437.765843	873.517133	0.68748	0.00030096	2.1519	0.00094204	2.8394	0.001243	437.76708659478527	49.604	0.22544	49.424	49.307	49.532	-0.18071					7	5	2	0	0	0	0.024325	1	4984	4984		17.365	0	1	58414	+		4662	24980	2750	2764	6245	6245					0.0753155318300287
ATGVYALTI	9	Unmodified	_ATGVYALTI_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.7737121582031	2	454.758018	907.501483	0.72054	0.00032767	-2.768	-0.0012588	-2.0474	-0.00093108	454.7576704420298	72.139	0.33054	71.856	71.73	72.06	-0.28259					12	8	2	0	0	0	0.024263	1	8753	8753		34.173	8.7224	1	56963	+		4663	27755	2751	2765	6246	6246					0.04403266665940464
ATIEIPNFNW	10	Unmodified	_ATIEIPNFNW_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	602.8031616210938	2	602.803488	1203.59242	-0.17485	-0.0001054	0.26712	0.00016102	0.09227	5.562E-05	602.8033566731333	93.425	0.61093	93.281	93.002	93.612	-0.1441					40	13	4	0	0	0	0.69662	1	11488	11488		67.494	28.241	1	527790			4664	11045	2752	2766	6247	6247					-0.0012288935658943956
ATIEIPNFNW	10	Unmodified	_ATIEIPNFNW_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	602.803488	1203.59242	-1.713	-0.0010326	2.025	0.0012207	0.31198	0.00018807	602.8044779500935	93.318	0.65538	93.178	92.873	93.528	-0.13995	-0.04946	0.00088916	NaN	67.494	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414990			4665	11045	2752	2766							-0.0012288935658943956
ATIEIPNFNW	10	Unmodified	_ATIEIPNFNW_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	602.803488	1203.59242	-0.30629	-0.00018463	0.47791	0.00028808	0.17161	0.00010345	602.8035796785052	93.346	0.56969	93.224	92.971	93.54	-0.12215	-0.0037442	-0.00097606	NaN	67.494	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394700			4666	11045	2752	2766							-0.0012288935658943956
ATIGELAQV	9	Unmodified	_ATIGELAQV_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2530212402344	2	451.2531	900.491647	-0.95113	-0.0004292	1.2574	0.00056739	0.30623	0.00013819	451.2534946454471	64.815	0.7961	64.552	64.193	64.989	-0.2626					46	20	3	0	0	0	0.17822	1	7620	7620		93.195	2.8256	1	2510500			4667	10202	2753	2767	6248	6248					0.03742078660570769
ATIGELAQV	9	Unmodified	_ATIGELAQV_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2532653808594	2	451.2531	900.491647	-0.044786	-2.021E-05	0.41791	0.00018858	0.37312	0.00016837	451.2531080074179	64.535	0.82821	64.58	64.225	65.053	0.045509					48	21	3	0	0	0	0.12602	1	7530	7530		104.75	5.3716	1	2846200			4668	10202	2753	2767	6249	6249					0.03742078660570769
ATIGLIRNL	9	Unmodified	_ATIGLIRNL_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;ENST00000585793.1_1_17:39914605-39919321:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7459411621094	2	485.805834	969.597115	-0.80703	-0.00039206	3.3525	0.0016287	2.5455	0.0012366	485.80599292994333	62.372	0.63103	62.194	61.804	62.435	-0.17781					40	16	4	0	0	0	0.020937	1	6995	6995		98.629	32.2	1	1701900			4669	8411	2754	2768	6250	6250					0.11110039576851705
ATIGLIRNL	9	Unmodified	_ATIGLIRNL_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;ENST00000585793.1_1_17:39914605-39919321:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7455749511719	2	485.805834	969.597115	-0.12566	-6.1045E-05	1.2475	0.00060606	1.1219	0.00054502	485.80551527238737	62.481	0.62148	62.223	61.897	62.518	-0.25824					37	16	3	0	0	0	0.020937	1	7014	7014		110.12	41.333	1	1702600			4670	8411	2754	2768	6251	6251					0.11110039576851705
ATIKDPPVLIP	11	Unmodified	_ATIKDPPVLIP_					0	0	0		ENSG00000145794|ENST00000503335|MEGF10;ENST00000515622.1_1_5:126783361-126801299:+|nuORF	ENSG00000145794|ENST00000503335|MEGF10	ENSG00000145794|ENST00000503335|MEGF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.353271484375	2	582.355357	1162.69616	-0.68918	-0.00040135	-2.6596	-0.0015488	-3.3488	-0.0019502	582.3536897697854	102.35	1.693	102.23	101.92	103.61	-0.12666					100	40	6	0	0	0	1.0238	1	12708	12708		31.53	2.3803	1	7549000			4671	5838	2755	2769	6252	6252					0.12132017751082458
ATIKEIVVW	9	Unmodified	_ATIKEIVVW_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.8156127929688	2	529.815867	1057.61718	-0.14063	-7.4508E-05	0.43309	0.00022946	0.29246	0.00015495	529.8166765876556	68.381	0.89134	68.12	67.814	68.706	-0.26166					48	21	4	0	0	0	0.28753	3	7894	7883;7894;7905		77.318	18.536	1	7798900			4672	4606	2756	2770	6253;6254;6255	6254					0.09067790516814966
ATIKEIVVW	9	Unmodified	_ATIKEIVVW_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.81591796875	2	529.815867	1057.61718	0.020601	1.0915E-05	0.36408	0.0001929	0.38468	0.00020381	529.8165947976862	68.333	0.72113	68.099	67.797	68.518	-0.23376					48	17	5	0	0	0	0.2101	2	7895	7895;7906		87.696	18.91	1	8218700			4673	4606	2756	2770	6256;6257	6256					0.09067790516814966
ATIKEIVVW	9	Unmodified	_ATIKEIVVW_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8163452148438	2	529.815867	1057.61718	0.46938	0.00024868	-0.088493	-4.6885E-05	0.38088	0.0002018	529.8163194576168	68.315	0.80464	68.085	67.755	68.559	-0.23047					38	19	3	0	0	0	0.34489	1	7882	7882		69.628	8.6557	1	7904400			4674	4606	2756	2770	6258	6258					0.09067790516814966
ATIKQKSR	8	Unmodified	_ATIKQKSR_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.25311279296875	2	466.287808	930.561064	-1.371	-0.00063928	-1.1001	-0.00051298	-2.4711	-0.0011523	466.2871166972566	40.5	0.29619	40.269	40.046	40.343	-0.2302					9	7	2	0	0	0	0.027866	1	3472	3472		14.137	0	1	98328	+		4675	19912	2757	2771	6259	6259					0.09300582399987434
ATILLLFLP	9	Unmodified	_ATILLLFLP_					0	0	0		ENST00000377044.8_2_9:74383426-74383705:-|nuORF	ENST00000377044.8_2_9:74383426-74383705:-|nuORF	ENST00000377044.8_2_9:74383426-74383705:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.80035400390625	2	500.825704	999.636855	-0.8915	-0.00044649	-4.4312	-0.0022193	-5.3227	-0.0026657	500.823474753	46.603	0.17054	46.45	46.309	46.479	-0.15301					6	4	2	0	0	0	0.024535	1	4591	4591		18.324	0	1	61097			4676	13196	2758	2772	6260	6260					0.13702166527559712
ATIPNARQF	9	Unmodified	_ATIPNARQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.2777404785156	2	509.277441	1016.54033	0.064399	3.2797E-05	-0.28753	-0.00014643	-0.22313	-0.00011363	509.2770360122963	45.874	0.74655	45.778	45.292	46.039	-0.096649					60	20	5	0	0	0	0.28753	2	4380	4380;4393		77.318	31.366	1	4805400			4677	1058	2759	2773	6261;6262	6261					0.03271992020336256
ATIPNARQF	9	Unmodified	_ATIPNARQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.27752685546875	2	509.277441	1016.54033	-0.40211	-0.00020479	-0.28208	-0.00014366	-0.68419	-0.00034844	509.27696181113606	46.057	0.70654	45.796	45.416	46.123	-0.26118					55	18	4	0	0	0	0.45795	2	4398	4398;4410		62.107	27.935	1	4223000			4678	1058	2759	2773	6263;6264	6263					0.03271992020336256
ATIPNARQF	9	Unmodified	_ATIPNARQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.2776794433594	2	509.277441	1016.54033	-0.92947	-0.00047336	0.51835	0.00026398	-0.41112	-0.00020937	509.27745916843025	45.989	0.64731	45.787	45.358	46.005	-0.20226					59	17	4	0	0	0	0.32811	2	4398	4384;4398		71.877	27.761	1	4299900			4679	1058	2759	2773	6265;6266	6266					0.03271992020336256
ATIRPWSTF	9	Unmodified	_ATIRPWSTF_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7875366210938	2	539.787641	1077.56073	-0.55231	-0.00029813	-0.23611	-0.00012745	-0.78842	-0.00042558	539.7873957301603	62.357	0.58593	62.143	61.737	62.323	-0.21375					33	13	4	0	0	0	0.17845	3	7008	6995;7008;7022		93.143	18.888	1	4222700			4680	2673	2760	2774	6267;6268;6269	6268					0.02505162680131434
ATIRPWSTF	9	Unmodified	_ATIRPWSTF_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.789306640625	2	539.787641	1077.56073	-1.1511	-0.00062135	0.71979	0.00038853	-0.43132	-0.00023282	539.7879952309975	62.237	0.57724	62.059	61.766	62.343	-0.17781					41	14	4	0	0	0	0.247	3	6986	6986;6996;7009		82.75	23.969	1	4365800			4681	2673	2760	2774	6270;6271;6272	6270					0.02505162680131434
ATIRPWSTF	9	Unmodified	_ATIRPWSTF_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.78759765625	2	539.787641	1077.56073	-1.2483	-0.00067384	0.41127	0.000222	-0.83707	-0.00045184	539.7878630868211	62.4	0.58598	62.142	61.782	62.368	-0.25824					35	14	3	0	0	0	0.12914	3	7004	6993;7004;7015		104.06	35.27	1	4035700			4682	2673	2760	2774	6273;6274;6275	6274					0.02505162680131434
ATKERIDF	8	Unmodified	_ATKERIDF_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;SMCHD1|p.E603Gfs*25|1|0.13|ENSG00000101596|chr18:2703851-2703854|GAAT/-|frameshift_variant	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7431640625	2	490.263999	978.513445	-0.51736	-0.00025364	-2.8025	-0.001374	-3.3199	-0.0016276	490.26391310884094	31.33	0.60435	31.399	31.082	31.686	0.06896					30	14	3	0	0	0	0.027866	1	2032	2032		40.573	5.3719	1	324490			4683	2338	2761	2775	6276	6276					0.02332883409144415
ATKEVNLD	8	Unmodified	_ATKEVNLD_					0	0	0		nc|ENSG00000117152|P49798-3|RGS4;nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4	nc|ENSG00000117152|P49798-3|RGS4	nc|ENSG00000117152|P49798-3|RGS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.24554443359375	2	445.234907	888.455261	0.24545	0.00010928	-2.5209	-0.0011224	-2.2755	-0.0010131	445.23376694287003	102.88	0.98243	102.87	102.55	103.53	-0.0046082					57	23	3	0	0	0	0.027866	1	13122	13122		24.203	0	1	2918300			4684	18198	2762	2776	6277	6277					0.006572017638518446
ATKFPEILL	9	Unmodified	_ATKFPEILL_					0	0	0		ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA;nc|ENSG00000155719|Q7RTW8-3|OTOA;ENST00000563506.1_1_16:21742071-21771858:+|nuORF;nc|ENSG00000155719|Q7RTW8-2|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA	ENSG00000155719|ENST00000646100|OTOA	ENSG00000155719|ENST00000646100|OTOA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.3096923828125	2	516.310418	1030.60628	-0.34156	-0.00017635	0.14009	7.2332E-05	-0.20147	-0.00010402	516.3102605749721	103.64	0.70975	103.64	103.27	103.98	-0.0032196					53	16	4	0	0	0	0.091713	1	13216	13216		113.41	0	1	721740			4685	6483	2763	2777	6278	6278					0.0922038814253483
ATKFPEILL	9	Unmodified	_ATKFPEILL_					0	0	0		ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA;nc|ENSG00000155719|Q7RTW8-3|OTOA;ENST00000563506.1_1_16:21742071-21771858:+|nuORF;nc|ENSG00000155719|Q7RTW8-2|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA	ENSG00000155719|ENST00000646100|OTOA	ENSG00000155719|ENST00000646100|OTOA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.310418	1030.60628	0.36116	0.00018647	-1.4479	-0.00074755	-1.0867	-0.00056108	516.3095811382602	103.53	1.0407	103.36	102.72	103.76	-0.17034	-0.18985	-0.0015022	NaN	113.41	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194680			4686	6483	2763	2777							0.0922038814253483
ATKKKKKK	8	Unmodified	_ATKKKKKK_					0	0	0		ENST00000406913.1_1_6:122001334-122001505:-|nuORF	REV__nc|ENSG00000070814|Q13428-2|TCOF1	REV__nc|ENSG00000070814|Q13428-2|TCOF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2923583984375	2	480.339844	958.665135	0.54944	0.00026392	1.5744	0.00075623	2.1238	0.0010201	480.34012194409513	55.944	0.17701	55.944	55.858	56.035	0					5	4	2	0	0	0	0.027866	1	6217	6217		3.41	0	1	34264	+		4687	20438	2764	2778	6279	6279					0.18414909227510634
ATKKKLREI	9	Unmodified	_ATKKKLREI_					0	0	0		ENST00000402966.1_1_22:42090190-42091087:+|nuORF	ENST00000402966.1_1_22:42090190-42091087:+|nuORF	ENST00000402966.1_1_22:42090190-42091087:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2728271484375	2	543.853316	1085.69208	-0.31586	-0.00017178	3.7185	0.0020223	3.4026	0.0018505	543.8552023950275	55.618	0.43045	55.402	55.237	55.668	-0.21607					17	11	2	0	0	0	0.024541	1	5953	5953		20.947	0	1	232820			4688	13691	2765	2779	6280	6280					0.15265973048053638
ATKLKNKSGK	10	Unmodified	_ATKLKNKSGK_					0	0	0		ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.8343505859375	2	537.835123	1073.65569	0.38315	0.00020607	-0.35319	-0.00018996	0.02996	1.6113E-05	537.8348374407348	20.642	0.49317	20.446	20.236	20.73	-0.19577					22	9	4	0	0	0	1.1246	1	564	564		23.523	1.5628	1	158240			4689	13612	2766	2780	6281	6281					0.12181096151334714
ATKPSVETF	9	Unmodified	_ATKPSVETF_					0	0	0			REV__ENSG00000205838|ENST00000505624|TTC23L	REV__ENSG00000205838|ENST00000505624|TTC23L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25836181640625	2	490.258382	978.502212	-0.11017	-5.4014E-05	3.1041	0.0015218	2.9939	0.0014678	490.26074189152354	102.25	3.064	102.25	100.58	103.64	0.0073471					108	72	4	0	0	0	0.87448	1	13090	13090		34.173	3.6689	1	519180	+		4690	28693	2767	2781	6282	6282					0.012100613149982564
ATKTKFTM	8	Oxidation (M)	_ATKTKFTM(Oxidation (M))_		ATKTKFTM(1)		ATKTKFTM(88)	0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2500305175781	2	472.249503	942.484453	0.40165	0.00018968	0.8802	0.00041567	1.2819	0.00060535	472.2493392670383	20.912	3.0467	20.738	19.761	22.808	-0.17417					130	63	3	0	0	0	0.47665	1	589	589		87.754	16.459	1	255740			4691	18271	2768	2782	6283	6283		567			0.010910227885005952
ATKTKFTM	8	Oxidation (M)	_ATKTKFTM(Oxidation (M))_		ATKTKFTM(1)		ATKTKFTM(77)	0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.24951171875	2	472.249503	942.484453	0.5656	0.00026711	0.14891	7.0324E-05	0.71451	0.00033743	472.2492236298091	20.901	1.7554	20.705	19.901	21.657	-0.19577					80	35	3	0	0	0	0.5947	1	599	599		76.774	7.9873	1	294110			4692	18271	2768	2782	6284	6284		567			0.010910227885005952
ATKTKFTM	8	Oxidation (M)	_ATKTKFTM(Oxidation (M))_		ATKTKFTM(1)		ATKTKFTM(88)	0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2497253417969	2	472.249503	942.484453	-1.1101	-0.00052424	1.697	0.00080141	0.5869	0.00027716	472.24997052810795	20.997	2.383	20.785	19.936	22.319	-0.2128					113	48	4	0	0	0	0.47727	1	593	593		87.696	13.18	1	288370			4693	18271	2768	2782	6285	6285		567			0.010910227885005952
ATKTKFTM	8	Oxidation (M)	_ATKTKFTM(Oxidation (M))_					0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.249503	942.484453	0.016707	7.89E-06	9.2876	0.0043861	9.3043	0.004394	472.25141435595305	21.152	1.2965	21.062	20.675	21.972	-0.090092	0.1655	0.0070016	NaN	87.754	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107520			4694	18271	2768	2782				567			0.010910227885005952
ATKTKFTM	8	Oxidation (M)	_ATKTKFTM(Oxidation (M))_					0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.249503	942.484453	0.59128	0.00027923	4.1465	0.0019582	4.7378	0.0022374	472.251104464528	21.121	0.49197	21.193	20.959	21.451	0.071489	0.29623	0.0021458	NaN	87.754	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113130			4695	18271	2768	2782				567			0.010910227885005952
ATKTKFTM	8	Unmodified	_ATKTKFTM_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2518310546875	2	464.252046	926.489538	-0.1118	-5.1905E-05	0.12246	5.6851E-05	0.010654	4.9459E-06	464.2519529948766	27.557	0.84982	27.315	27.035	27.885	-0.24217					47	19	4	0	0	0	0.29162	2	1548	1538;1548		115.49	58.773	1	1263400			4696	18271	2768	2783	6286;6287	6287					0.02335326651109426
ATKTKFTM	8	Unmodified	_ATKTKFTM_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.2518005371094	2	464.252046	926.489538	-0.62202	-0.00028877	0.60856	0.00028253	-0.013455	-6.2466E-06	464.2521739977634	27.42	0.67795	27.251	26.971	27.649	-0.16816					42	15	3	0	0	0	0.27613	2	1516	1506;1516		122.18	63.394	1	1470400			4697	18271	2768	2783	6288;6289	6289					0.02335326651109426
ATKTKFTM	8	Unmodified	_ATKTKFTM_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.25225830078125	2	464.252046	926.489538	-0.2502	-0.00011616	0.36479	0.00016935	0.11459	5.3197E-05	464.2520259597206	27.525	0.73531	27.369	27.145	27.88	-0.15664					43	17	4	0	0	0	0.12734	2	1500	1500;1510		153.04	92.064	1	1447400			4698	18271	2768	2783	6290;6291	6290					0.02335326651109426
ATKTKFTM	8	Unmodified	_ATKTKFTM_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.252046	926.489538	-0.49596	-0.00023025	-6.8789	-0.0031936	-7.3749	-0.0034238	464.24876589375594	27.233	0.85153	27.233	26.993	27.844	0	0.0063396	-0.0044976	NaN	153.04	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314170			4699	18271	2768	2783							0.02335326651109426
ATKTKFTM	8	Unmodified	_ATKTKFTM_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	464.252046	926.489538	-0.3507	-0.00016281	-6.7524	-0.0031348	-7.1031	-0.0032976	464.2487506430076	27.191	0.62504	27.178	26.911	27.536	-0.012983	-0.048346	-0.0043801	NaN	153.04	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331350			4700	18271	2768	2783							0.02335326651109426
ATKTKFTM	8	Unmodified	_ATKTKFTM_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.252046	926.489538	-0.30873	-0.00014333	-6.4855	-0.0030109	-6.7943	-0.0031543	464.2490041441021	26.931	0.77603	27.012	26.758	27.534	0.081293	-0.21405	-0.0041323	NaN	153.04	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377720			4701	18271	2768	2783							0.02335326651109426
ATLENLELAF	10	Unmodified	_ATLENLELAF_					0	0	0			REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.7984619140625	2	560.797872	1119.58119	1.4421	0.0008087	-0.87	-0.00048789	0.57206	0.00032081	560.7973123147171	16.885	1.5287	16.731	16.524	18.053	-0.15376					55	30	4	0	0	0	0.91678	2	118	107;118		52.937	10.541	1	1173700	+		4702	19819	2769	2784	6292;6293	6293					0.02618288549274439
ATLENLELAF	10	Unmodified	_ATLENLELAF_					0	0	0			REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7976684570312	2	560.797872	1119.58119	-0.19383	-0.0001087	0.66132	0.00037087	0.4675	0.00026217	560.798190042787	16.845	0.84574	16.637	16.418	17.264	-0.20777					39	17	3	0	0	0	0.98754	1	98	98		47.657	0	1	871720	+		4703	19819	2769	2784	6294	6294					0.02618288549274439
ATLENLELAF	10	Unmodified	_ATLENLELAF_					0	0	0			REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.797872	1119.58119	5.222	0.0029285	-4.6954	-0.0026332	0.52655	0.00029529	560.7953017667008	16.964	0.20794	16.71	16.578	16.786	-0.25309	0.017499	-0.0043809	NaN	52.937	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30013	+		4704	19819	2769	2784							0.02618288549274439
ATLKEAELVTH	11	Unmodified	_ATLKEAELVTH_					0	0	0		nc|ENSG00000122417|Q9ULJ1-6|ODF2L;nc|ENSG00000122417|Q9ULJ1-3|ODF2L;ENSG00000122417|ENST00000460698|ODF2L;nc|ENSG00000122417|Q9ULJ1-2|ODF2L;nc|ENSG00000122417|Q9ULJ1|ODF2L	nc|ENSG00000122417|Q9ULJ1-6|ODF2L	nc|ENSG00000122417|Q9ULJ1-6|ODF2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.55975341796875	3	404.559194	1210.65575	0.46809	0.00018937	0.4996	0.00020212	0.9677	0.00039149	404.5594454464146	33.429	0.77978	33.229	32.937	33.717	-0.20019					71	19	6	0	0	0	1.017	1	2368	2368		33.039	0	1	11796000			4705	3923	2770	2785	6295	6295					0.0588505136065578
ATLKLRTPLP	10	Unmodified	_ATLKLRTPLP_					0	0	0		ENST00000243498.9_1_4:122722566-122723007:+|nuORF	ENST00000243498.9_1_4:122722566-122723007:+|nuORF	ENST00000243498.9_1_4:122722566-122723007:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.3532104492188	2	555.355691	1108.69683	-0.12046	-6.6898E-05	-3.7617	-0.0020891	-3.8821	-0.002156	555.3534816537995	99.884	0.65701	99.713	99.316	99.974	-0.17088					48	18	4	0	0	0	1.0508	1	12384	12384		39.253	10.103	1	851930			4706	11293	2771	2786	6296	6296					0.14682857190791765
ATLKNPILW	9	Unmodified	_ATLKNPILW_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.3159790039062	2	528.316035	1054.61752	-0.79833	-0.00042177	-0.42001	-0.0002219	-1.2183	-0.00064367	528.3156548093854	66.681	1.294	66.457	66.145	67.439	-0.22374					73	36	3	0	0	0	0.2508	2	7652	7652;7661		82.241	15.811	1	8976800			4707	3700	2772	2787	6297;6298	6297					0.09239210236660256
ATLKNPILW	9	Unmodified	_ATLKNPILW_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.8171997070312	2	528.316035	1054.61752	-0.40637	-0.00021469	-0.6958	-0.0003676	-1.1022	-0.00058229	528.3155469513997	66.662	0.70377	66.417	66.127	66.831	-0.24517					51	22	3	0	0	0	0.2508	3	7669	7639;7647;7669		82.241	20.133	1	8295100			4708	3700	2772	2787	6299;6300;6301	6301					0.09239210236660256
ATLKNPILW	9	Unmodified	_ATLKNPILW_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	528.316035	1054.61752	-0.29034	-0.00015339	-0.92432	-0.00048833	-1.2147	-0.00064173	528.3153734222275	66.754	0.86084	66.505	66.179	67.04	-0.24839	0.045463	-0.0002204	NaN	82.241	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7051200			4709	3700	2772	2787							0.09239210236660256
ATLLEGKTL	9	Unmodified	_ATLLEGKTL_					0	0	0		LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|4|1|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|4|1|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|4|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.9715881347656	2	473.2844	944.554247	0.10292	4.8709E-05	-0.073006	-3.4553E-05	0.029912	1.4157E-05	473.2843431773539	49.742	0.26684	49.462	49.28	49.547	-0.27977					9	6	2	0	0	0	0.024	1	4978	4978		37.159	5.2042	1	65277			4710	17938	2773	2788	6302	6302					0.079752247287729
ATLLLMTTP	9	Unmodified	_ATLLLMTTP_					0	0	0			REV__ENSG00000099337|ENST00000263372|KCNK6	REV__ENSG00000099337|ENST00000263372|KCNK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.21728515625	2	480.775354	959.536154	0.72731	0.00034967	3.0703	0.0014761	3.7976	0.0018258	480.7766694548372	37.061	0.70757	36.851	36.485	37.192	-0.2092					39	17	3	0	0	0	0.024323	1	2940	2940		53.351	9.2347	1	1152800	+		4711	21002	2774	2789	6303	6303					0.05476766482399853
ATLLYLGT	8	Unmodified	_ATLLYLGT_					0	0	0			REV__ENSG00000130368|ENST00000674077|MAS1	REV__ENSG00000130368|ENST00000674077|MAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2462158203125	2	426.247286	850.48002	0.91762	0.00039113	-3.8716	-0.0016503	-2.954	-0.0012591	426.245560884628	84.243	1.1103	84.084	83.628	84.738	-0.15869					58	25	3	0	0	0	1.0574	1	10187	10187		26.796	0	1	819460	+		4712	23108	2775	2790	6304	6304					0.04879881637236849
ATLVPVVAL	9	Unmodified	_ATLVPVVAL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7876892089844	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	0.88411	1	3577	3577		33.516	5.2613	1	35892000	+		4713	21364	2776	2791	6305	6305					0.11308733942325944
ATLVPVVAL	9	Unmodified	_ATLVPVVAL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7876892089844	2	441.786579	881.558604	0.87176	0.00038513	2.2048	0.00097404	3.0765	0.0013592	441.78747647612784	40.712	1.9602	40.589	40.197	42.158	-0.12317					202	55	5	0	0	0	0.96855	1	3681	3681		26.796	2.5934	1	30089000	+		4714	21364	2776	2791	6306	6306					0.11308733942325944
ATLVPVVAL	9	Unmodified	_ATLVPVVAL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.78765869140625	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	0.85941	2	3524	3524;3532		35.201	5.3592	1	39693000	+		4715	21364	2776	2791	6307;6308	6307					0.11308733942325944
ATMPKRKVS	9	Unmodified	_ATMPKRKVS_					0	0	0		ENST00000464078.5_1_21:40720431-40720924:-|nuORF;ENST00000486741.5_1_21:40720139-40720924:-|nuORF;ENST00000479586.5_1_21:40719749-40720924:-|nuORF	ENST00000464078.5_1_21:40720431-40720924:-|nuORF	ENST00000464078.5_1_21:40720431-40720924:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.27093505859375	2	509.297319	1016.58008	0.16942	8.6286E-05	-2.5697	-0.0013088	-2.4003	-0.0012225	509.2960537225338	50.535	1.0408	50.355	49.644	50.685	-0.18071					76	27	5	0	0	0	0.022882	1	5104	5104		95.815	8.0609	1	1420400			4716	14751	2777	2792	6309	6309					0.07245795699407154
ATNKDTKIAK	10	Unmodified	_ATNKDTKIAK_					0	0	0		nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR	nc|ENSG00000138039|P22888-2|LHCGR	nc|ENSG00000138039|P22888-2|LHCGR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3162841796875	2	545.316763	1088.61897	-0.23183	-0.00012642	0.0239	1.3033E-05	-0.20793	-0.00011339	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.1081	1	11423	11423		31.634	1.3165	1	11601000			4717	5195	2778	2793	6310	6310					0.07820799534761136
ATNPESKVF	9	Unmodified	_ATNPESKVF_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.755859375	2	496.756007	991.497461	-0.82367	-0.00040916	-0.058805	-2.9212E-05	-0.88247	-0.00043837	496.7558160118853	39.297	0.73088	39.132	38.727	39.458	-0.16459					54	19	4	0	0	0	0.34489	1	3324	3324		69.628	6.6492	1	2715800			4718	4779	2779	2794	6311	6311					0.001371771722460835
ATNPESKVF	9	Unmodified	_ATNPESKVF_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.75604248046875	2	496.756007	991.497461	-0.1815	-9.0159E-05	-0.78658	-0.00039074	-0.96807	-0.0004809	496.75540317437805	39.415	0.72636	39.189	38.669	39.395	-0.2257					55	19	4	0	0	0	0.32811	2	3325	3312;3325		71.877	6.4121	1	2770800			4719	4779	2779	2794	6312;6313	6313					0.001371771722460835
ATNRITVTW	9	Unmodified	_ATNRITVTW_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2901000976562	2	531.290548	1060.56654	-1.0204	-0.00054215	0.25931	0.00013777	-0.76113	-0.00040438	531.2906416481782	54.079	1.1485	53.943	53.661	54.81	-0.13617					90	33	4	0	0	0	0.016542	6	5735	5700;5711;5722;5735;5747;5762		154.12	57.928	1	27777000			4720	2649	2780	2795	6314;6315;6316;6317;6318;6319	6317					0.03868261191792044
ATNRITVTW	9	Unmodified	_ATNRITVTW_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2901611328125	2	531.290548	1060.56654	-0.53166	-0.00028247	-0.36559	-0.00019424	-0.89726	-0.0004767	531.2903987740458	54.241	1.0466	53.995	53.687	54.733	-0.2453					103	31	6	0	0	0	0.020687	6	5731	5719;5731;5741;5751;5764;5777		148.99	52.796	1	30667000			4721	2649	2780	2795	6320;6321;6322;6323;6324;6325	6321					0.03868261191792044
ATNRITVTW	9	Unmodified	_ATNRITVTW_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2903442382812	2	531.290548	1060.56654	-0.050093	-2.6614E-05	-0.74544	-0.00039604	-0.79553	-0.00042266	531.2901033511281	54.15	1.247	53.952	53.556	54.803	-0.19739					90	35	4	0	0	0	0.016542	6	5701	5701;5711;5723;5733;5746;5761		154.12	49.372	1	28158000			4722	2649	2780	2795	6326;6327;6328;6329;6330;6331	6326					0.03868261191792044
ATNRRQGR	8	Unmodified	_ATNRRQGR_					0	0	0		ENST00000391773.5_1_19:54327198-54327612:-|nuORF	ENST00000391773.5_1_19:54327198-54327612:-|nuORF	ENST00000391773.5_1_19:54327198-54327612:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2774963378906	2	479.768106	957.521659	-0.30961	-0.00014854	-0.75493	-0.00036219	-1.0645	-0.00051073	479.7676530632592	82.658	0.4775	82.518	82.26	82.737	-0.14014					12	10	2	0	0	0	0.027866	1	9954	9954		21.96	14.767	1	53718			4723	13392	2781	2796	6332	6332					0.04119875169135412
ATNVNNWHW	9	Unmodified	_ATNVNNWHW_					0	0	0		ENST00000554156.5_1_14:77924532-77928597:+|nuORF;ENST00000556963.5_1_14:77924568-77929110:+|nuORF;nc|ENSG00000100591|O95433-2|AHSA1;ENSG00000100591|ENST00000216479|AHSA1	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2728881835938	2	571.262322	1140.51009	-0.19573	-0.00011181	0.61243	0.00034986	0.4167	0.00023805	571.2626804898345	56.891	0.51613	56.724	56.52	57.036	-0.1672					27	13	3	0	0	0	0.023655	1	6179	6179		79.713	32.055	1	1417100			4724	2223	2782	2797	6333	6333					-0.05454366644858055
ATNVNNWHW	9	Unmodified	_ATNVNNWHW_					0	0	0		ENST00000554156.5_1_14:77924532-77928597:+|nuORF;ENST00000556963.5_1_14:77924568-77929110:+|nuORF;nc|ENSG00000100591|O95433-2|AHSA1;ENSG00000100591|ENST00000216479|AHSA1	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2726440429688	2	571.262322	1140.51009	0.37409	0.00021371	0.076494	4.3698E-05	0.45059	0.0002574	571.2625578334038	56.897	0.33009	56.695	56.596	56.926	-0.20209					22	8	4	0	0	0	0.023837	1	6192	6192		74.255	39.103	1	1513600			4725	2223	2782	2797	6334	6334					-0.05454366644858055
ATNVNNWHW	9	Unmodified	_ATNVNNWHW_					0	0	0		ENST00000554156.5_1_14:77924532-77928597:+|nuORF;ENST00000556963.5_1_14:77924568-77929110:+|nuORF;nc|ENSG00000100591|O95433-2|AHSA1;ENSG00000100591|ENST00000216479|AHSA1	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	ENST00000554156.5_1_14:77924532-77928597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.2723388671875	2	571.262322	1140.51009	0.17177	9.8128E-05	-0.54114	-0.00030913	-0.36936	-0.000211	571.2619700719991	56.984	0.33456	56.759	56.7	57.035	-0.22479					14	8	3	0	0	0	0.024374	1	6193	6193		58.782	28.464	1	930170			4726	2223	2782	2797	6335	6335					-0.05454366644858055
ATPDHFHM	8	Unmodified	_ATPDHFHM_					0	0	0		ENST00000438961.1_1_7:766900-790557:+|nuORF;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	ENST00000438961.1_1_7:766900-790557:+|nuORF	ENST00000438961.1_1_7:766900-790557:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.236572265625	2	478.20817	954.401786	0.071027	3.3966E-05	2.4164	0.0011555	2.4874	0.0011895	478.2091577552544	31.477	0.49192	31.477	31.257	31.749	0					14	11	2	0	0	0	0.027866	1	2118	2118		25.45	0	1	39619			4727	7325	2783	2798	6336	6336					-0.07723874219641402
ATPGPIQSLL	10	Unmodified	_ATPGPIQSLL_					0	0	0			REV__ENSG00000166387|ENST00000299492|PPFIBP2	REV__ENSG00000166387|ENST00000299492|PPFIBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7904052734375	2	498.78985	995.565146	-0.055861	-2.7863E-05	-0.14628	-7.2962E-05	-0.20214	-0.00010083	498.78966313093935	70.172	1.3431	69.958	68.945	70.288	-0.21425					91	32	6	0	0	0	0.66532	1	8197	8197		69.628	3.8245	1	7758300	+		4728	26009	2784	2799	6337	6337					0.06718627103043673
ATPPPLTQAL	10	Unmodified	_ATPPPLTQAL_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.71417236328125	2	504.78985	1007.56515	-0.25019	-0.00012629	-0.29689	-0.00014987	-0.54708	-0.00027616	504.7894445568086	31.6	0.47713	31.415	31.172	31.649	-0.18503					19	11	2	0	0	0	0.03519	1	2100	2100		34.173	0	1	101540	+		4729	27102	2785	2800	6338	6338					0.061666271030162534
ATPPVSFYL	9	Unmodified	_ATPPVSFYL_					0	0	0			REV__nc|ENSG00000261011|Q8TF27|AGAP11	REV__nc|ENSG00000261011|Q8TF27|AGAP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7650146484375	2	497.765843	993.517133	2.124	0.0010573	-2.8412	-0.0014142	-0.71718	-0.00035699	497.76436009082823	18.841	1.3367	18.598	18.324	19.661	-0.24256					40	26	2	0	0	0	0.92825	1	323	323		30.504	1.3336	1	202880	+		4730	37186	2786	2801	6339	6339					0.020115531830015243
ATQALKLRHLT	11	Unmodified	_ATQALKLRHLT_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.9224548339844	3	417.922578	1250.7459	0.21081	8.8103E-05	-1.0544	-0.00044065	-0.84357	-0.00035255	417.9221205737804	104.31	0.87881	104.32	103.91	104.79	0.0031357					68	23	4	0	0	0	1.044	1	13340	13340		26.75	4.1881	1	2248100	+		4731	28550	2787	2802	6340	6340					0.13056145479754377
ATQIKTYSW	9	Unmodified	_ATQIKTYSW_					0	0	0		ENSG00000169213|ENST00000371655|RAB3B;ENSG00000105514|ENST00000222120|RAB3D	ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.28515625	2	549.284931	1096.55531	0.062683	3.4431E-05	0.081822	4.4944E-05	0.14451	7.9374E-05	549.28479130099	49.832	0.6402	49.727	49.486	50.127	-0.10558					40	16	4	0	0	0	0.15388	1	5030	5030		98.582	26.705	1	1754100			4732	2686	2788	2803	6341	6341					0.010894390976545765
ATQIKTYSW	9	Unmodified	_ATQIKTYSW_					0	0	0		ENSG00000169213|ENST00000371655|RAB3B;ENSG00000105514|ENST00000222120|RAB3D	ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.2853393554688	2	549.284931	1096.55531	0.26156	0.00014367	-0.22547	-0.00012385	0.036096	1.9827E-05	549.2846653629003	49.937	0.56017	49.756	49.495	50.055	-0.18071					42	14	4	0	0	0	0.079716	1	5041	5041		117.81	35.571	1	1939700			4733	2686	2788	2803	6342	6342					0.010894390976545765
ATRCKAATV	9	Unmodified	_ATRCKAATV_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.7510681152344	2	460.752744	919.490935	-0.21921	-0.000101	-3.7013	-0.0017054	-3.9205	-0.0018064	460.7510318823482	34.387	1.9437	34.387	33.626	35.57	0					95	50	5	0	0	0	0.067814	1	2540	2540		122.18	5.2724	1	13500000			4734	7208	2789	2804	6343	6343					0.027969607398631524
ATRCKAATV	9	Unmodified	_ATRCKAATV_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.7508239746094	2	460.752744	919.490935	0.096711	4.456E-05	-4.1032	-0.0018906	-4.0065	-0.001846	460.7508695777908	34.186	1.2731	34.181	33.829	35.102	-0.0045624					78	32	5	0	0	0	0.067814	3	2509	2497;2509;2521		122.18	17.429	1	13566000			4735	7208	2789	2804	6344;6345;6346	6345					0.027969607398631524
ATRCKAATV	9	Unmodified	_ATRCKAATV_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.7510681152344	2	460.752744	919.490935	-0.22876	-0.0001054	-3.7296	-0.0017184	-3.9584	-0.0018238	460.7510453822485	34.144	1.5981	34.195	33.493	35.091	0.050251					89	40	5	0	0	0	0.12602	2	2450	2450;2470		104.75	16.992	1	11854000			4736	7208	2789	2804	6347;6348	6347					0.027969607398631524
ATRKAFTTFR	10	Unmodified	_ATRKAFTTFR_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	3	400.22789	1197.66184	1.79	0.00071642	3.9775	0.0015919	5.7675	0.0023083	400.2295883128697	21.979	1.5639	22.051	21.546	23.11	0.071487					115	32	6	0	0	0	0.80743	1	676	676		60.167	0.90229	1	6027300			4737	6165	2790	2805	6349	6349					0.07091614382829903
ATRLQKTLP	9	Unmodified	_ATRLQKTLP_					0	0	0		ENST00000429687.7_1_14:20813096-20813561:+|nuORF;ENST00000527915.5_1_14:20813096-20813561:+|nuORF	ENST00000429687.7_1_14:20813096-20813561:+|nuORF	ENST00000429687.7_1_14:20813096-20813561:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2883911132812	2	514.316566	1026.61858	-0.87513	-0.00045009	1.2544	0.00064514	0.37924	0.00019505	514.3168724699348	40.272	0.30688	40.042	39.851	40.158	-0.23021					13	7	2	0	0	0	0.024374	1	3442	3442		40.778	0	1	195330			4738	14152	2791	2806	6350	6350					0.10633424605566688
ATRNNFLN	8	Unmodified	_ATRNNFLN_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.24786376953125	2	475.246141	948.477728	4.3931	0.0020878	-0.73228	-0.00034801	3.6608	0.0017398	475.2456111500671	17.041	0.34361	17.041	16.907	17.25	0					19	7	4	0	0	0	1.0106	1	121	121		35.618	0	1	161290	+		4739	25823	2792	2807	6351	6351					0.0014284595213212015
ATRPDFNL	8	Unmodified	_ATRPDFNL_					0	0	0			REV__ENSG00000131375|ENST00000253693|CAPN7	REV__ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7535400390625	2	467.243067	932.47158	-0.67996	-0.00031771	3.4756	0.001624	2.7957	0.0013063	467.2445429926809	43.906	1.0625	43.761	43.131	44.194	-0.14471					40	29	4	0	0	0	0.027866	1	4085	4085		31.955	11.473	1	165400	+		4740	23203	2793	2808	6352	6352					0.0026432772061752985
ATRPDFNL	8	Unmodified	_ATRPDFNL_					0	0	0			REV__ENSG00000131375|ENST00000253693|CAPN7	REV__ENSG00000131375|ENST00000253693|CAPN7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	467.243067	932.47158	0.58009	0.00027104	2.141	0.0010003	2.7211	0.0012714	467.24404704775617	43.782	0.46991	43.813	43.7	44.17	0.030827	0.048336	-0.0010377	NaN	31.955	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151910	+		4741	23203	2793	2808							0.0026432772061752985
ATRPDYISW	9	Unmodified	_ATRPDYISW_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7744140625	2	554.774731	1107.53491	-0.58012	-0.00032184	0.62266	0.00034544	0.042541	2.3601E-05	554.7750525630994	57.771	0.69841	57.593	57.096	57.795	-0.17775					52	17	4	0	0	0	0.22902	2	6329	6316;6329		85.161	10.118	1	5244400			4742	4526	2794	2809	6353;6354	6354					-0.014557315621459566
ATRPDYISW	9	Unmodified	_ATRPDYISW_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.774169921875	2	554.774731	1107.53491	-0.52415	-0.00029079	0.63546	0.00035254	0.11131	6.1752E-05	554.7749806269433	57.865	0.72247	57.632	57.164	57.887	-0.23363					39	18	3	0	0	0	0.14181	3	6313	6313;6321;6335		101.25	31.625	1	5253800			4743	4526	2794	2809	6355;6356;6357	6355					-0.014557315621459566
ATRQQPALD	9	Unmodified	_ATRQQPALD_					0	0	0			REV__TNFRSF10B|p.A67T|1|0.1|ENSG00000120889|chr8:23043189-23043189|C/T|missense_variant	REV__TNFRSF10B|p.A67T|1|0.1|ENSG00000120889|chr8:23043189-23043189|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.287841796875	2	500.26453	998.514508	0.39747	0.00019884	3.5149	0.0017584	3.9124	0.0019572	500.2662222902915	55.841	0.81488	55.841	55.536	56.351	0					38	22	2	0	0	0	0.023454	1	6187	6187		71.877	34.718	1	2289700	+		4744	37711	2795	2810	6358	6358					0.015190977780321191
ATRQVFLW	8	Unmodified	_ATRQVFLW_					0	0	0		ENST00000313478.11_1_15:50941001-50979001:-|nuORF	ENST00000313478.11_1_15:50941001-50979001:-|nuORF	ENST00000313478.11_1_15:50941001-50979001:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7849426269531	2	510.784902	1019.55525	-0.60007	-0.00030651	0.1261	6.441E-05	-0.47397	-0.0002421	510.78478169770153	64.678	0.82657	64.476	63.951	64.778	-0.20254					47	20	3	0	0	0	0.77775	1	7370	7370		60.972	3.1607	1	1242100			4745	12102	2796	2811	6359	6359					0.046254838883328375
ATRRPRSL	8	Unmodified	_ATRRPRSL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.75250244140625	2	478.79105	955.567546	0.47373	0.00022682	1.065	0.00050991	1.5387	0.00073673	478.79141828708913	33.073	0.89044	33.129	32.571	33.461	0.056572					58	23	4	0	0	0	0.027866	1	2316	2316		31.955	22.772	1	571930	+		4746	25017	2797	2812	6360	6360					0.08798520351376737
ATRSRPEVV	9	Unmodified	_ATRSRPEVV_					0	0	0			REV__ENST00000310597.5_1_11:64884694-64884751:-|nuORF	REV__ENST00000310597.5_1_11:64884694-64884751:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	507.788173	1013.56179	-0.57373	-0.00029134	1.7285	0.00087771	1.1548	0.00058638	507.78856266375453	22.608	0.83571	22.608	22.012	22.848	0					24	17	2	0	0	0	0.023817	1	803	803		60.972	0	1	140550	+		4747	30191	2798	2813	6361	6361					0.05555377049051913
ATRTHKCS	8	Unmodified	_ATRTHKCS_					0	0	0		RALGDS|p.R777C|1|0.17|ENSG00000160271|chr9:133101645-133101645|G/A|missense_variant	RALGDS|p.R777C|1|0.17|ENSG00000160271|chr9:133101645-133101645|G/A|missense_variant	RALGDS|p.R777C|1|0.17|ENSG00000160271|chr9:133101645-133101645|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.22857666015625	2	452.226894	902.439234	-0.094697	-4.2824E-05	2.6867	0.001215	2.592	0.0011722	452.22826882248506	102.79	1.6411	102.79	102.26	103.9	0					83	39	5	0	0	0	1.0338	1	13160	13160		31.955	2.1133	1	2985300			4748	19026	2799	2814	6362	6362					-0.015887829540361054
ATRVLEWI	8	Unmodified	_ATRVLEWI_					0	0	0		ENST00000559126.5_1_15:85186703-85196938:-|nuORF;ENSG00000177082|ENST00000434634|WDR73;ENST00000560966.5_1_15:85196845-85196905:-|nuORF;ENST00000560252.5_1_15:85191115-85197505:-|nuORF;ENST00000559994.5_1_15:85189295-85197510:-|nuORF;ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF;ENST00000559994.5_1_15:85189295-85197510:-|nuORF;ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.8031921386719	2	494.284734	986.554916	-0.065325	-3.2289E-05	-3.0387	-0.001502	-3.104	-0.0015343	494.28304376861485	23.304	0.53859	23.102	22.78	23.318	-0.20193					21	11	3	0	0	0	0.027866	1	905	905		55.504	16.251	1	76111			4749	8704;16791;16769	2800	2815	6363	6363					0.0611006416845612
ATSGDYLRVW	10	Unmodified	_ATSGDYLRVW_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.2930297851562	2	584.293288	1166.57202	-0.39065	-0.00022825	0.019005	1.1105E-05	-0.37165	-0.00021715	584.2933030103445	63.979	0.66857	63.752	63.475	64.144	-0.22773					57	16	5	0	0	0	0.32213	1	7259	7259		106.68	37.055	1	1768300			4750	5020	2801	2816	6364	6364					-0.004600600163939816
ATSGDYLRVW	10	Unmodified	_ATSGDYLRVW_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.2930908203125	2	584.293288	1166.57202	-0.57417	-0.00033548	0.66212	0.00038687	0.087954	5.1391E-05	584.29343058097	64.061	0.77167	63.803	63.495	64.267	-0.25824					47	19	3	0	0	0	0.50091	1	7260	7260		88.177	10.859	1	1889500			4751	5020	2801	2816	6365	6365					-0.004600600163939816
ATSGEHDKLE	10	Unmodified	_ATSGEHDKLE_					0	0	0			REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.7957763671875	2	543.756735	1085.49892	-0.30132	-0.00016385	0.55458	0.00030156	0.25326	0.00013771	543.7570927327091	71.951	0.22269	71.961	71.765	71.988	0.0097656					7	5	2	0	0	0	0.03519	1	8637	8637		67.494	19.836	1	66953	+		4752	37018	2802	2817	6366	6366					-0.040412335296878155
ATSHQWLHS	9	Unmodified	_ATSHQWLHS_					0	0	0		ENST00000438705.3_1_7:45023490-45026133:-|nuORF	ENST00000438705.3_1_7:45023490-45026133:-|nuORF	ENST00000438705.3_1_7:45023490-45026133:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8035278320312	2	533.756872	1065.49919	-0.54892	-0.00029299	-2.5548	-0.0013636	-3.1037	-0.0016566	533.754797884914	41.647	1.3917	41.515	40.824	42.216	-0.13219					102	39	4	0	0	0	0.024263	1	3839	3839		51.335	0	1	713420			4753	14316	2803	2818	6367	6367					-0.030937690191422007
ATSKYLIGW	9	Unmodified	_ATSKYLIGW_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.7835083007812	2	519.784567	1037.55458	-0.30554	-0.00015881	-0.35016	-0.00018201	-0.6557	-0.00034082	519.7844330304403	63.702	0.73192	63.474	63.135	63.866	-0.22773					37	18	3	0	0	0	0.12914	1	7211	7211		104.06	29.802	1	2468300			4754	10014	2804	2819	6368	6368					0.037306444486148393
ATSSSQRDW	9	Unmodified	_ATSSSQRDW_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2359008789062	2	519.23597	1036.45739	-0.8773	-0.00045553	0.71567	0.0003716	-0.16164	-8.3928E-05	519.23617868207	26.762	0.90098	26.526	26.268	27.169	-0.23603					50	21	4	0	0	0	0.22379	2	1428	1418;1428		85.862	21.655	1	1348100			4755	362	2805	2820	6369;6370	6370					-0.05938369498335305
ATSSSQRDW	9	Unmodified	_ATSSSQRDW_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2357788085938	2	519.23597	1036.45739	-0.075116	-3.9003E-05	-0.17929	-9.3092E-05	-0.2544	-0.0001321	519.2357388973134	26.53	0.77312	26.362	26.119	26.892	-0.16816					50	18	4	0	0	0	0.20652	3	1392	1381;1392;1403		88.177	17.562	1	1212600			4756	362	2805	2820	6371;6372;6373	6372					-0.05938369498335305
ATTHAKKKPV	10	Unmodified	_ATTHAKKKPV_					0	0	0		ZNF556|p.R335T|1|0.27|ENSG00000172000|chr19:2877962-2877962|G/C|missense_variant	ZNF556|p.R335T|1|0.27|ENSG00000172000|chr19:2877962-2877962|G/C|missense_variant	ZNF556|p.R335T|1|0.27|ENSG00000172000|chr19:2877962-2877962|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7974853515625	2	540.82984	1079.64513	-0.28302	-0.00015306	3.2321	0.001748	2.9491	0.0015949	540.8311887894532	77.196	1.2433	77.196	76.919	78.162	0					37	29	2	0	0	0	0.03519	1	9552	9552		30.318	3.6248	1	223310			4757	38199	2806	2821	6374	6374					0.10849113496897189
ATTIKANVLW	10	Unmodified	_ATTIKANVLW_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.7579345703125	2	558.824224	1115.63389	0.20971	0.00011719	-1.024	-0.00057226	-0.81433	-0.00045507	558.8236438282631	71.585	0.56035	71.379	71.139	71.699	-0.20613					25	13	2	0	0	0	0.03519	1	8364	8364		37.159	15.473	1	297130	+		4758	23178	2807	2822	6375	6375					0.08070291402736984
ATTLWTAASP	10	Unmodified	_ATTLWTAASP_					0	0	0			REV__ENST00000467302.5_1_1:109234995-109235238:+|nuORF	REV__ENST00000467302.5_1_1:109234995-109235238:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.31634521484375	2	509.763832	1017.51311	0.077402	3.9457E-05	-0.10843	-5.5273E-05	-0.031026	-1.5816E-05	509.7638577933107	74.471	0.76583	74.208	73.966	74.732	-0.26326					25	17	2	0	0	0	0.03519	1	8769	8769		19.997	0	1	330370	+		4759	33070	2808	2823	6376	6376					0.0050546368928507945
ATVILQRAF	9	Unmodified	_ATVILQRAF_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8056945800781	2	509.805834	1017.59712	-0.11234	-5.7271E-05	0.033	1.6823E-05	-0.079339	-4.0448E-05	509.8057052188071	57.735	0.45679	57.545	57.332	57.789	-0.19018					30	11	3	0	0	0	0.48817	1	6337	6337		60.118	12.461	1	1777600			4760	1335	2809	2824	6377	6377					0.08902039576844345
ATVILQRAF	9	Unmodified	_ATVILQRAF_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.805834	1017.59712	-0.50479	-0.00025734	0.48581	0.00024767	-0.018973	-9.6725E-06	509.8060224305574	57.79	0.51129	57.613	57.242	57.754	-0.17775	0.016401	0.00027367	NaN	60.118	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1570700			4761	1335	2809	2824							0.08902039576844345
ATVILQRAF	9	Unmodified	_ATVILQRAF_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.805834	1017.59712	-0.48989	-0.00024975	0.52823	0.0002693	0.038342	1.9547E-05	509.80600466109087	57.865	0.43052	57.631	57.349	57.78	-0.23363	0.035263	0.00031692	NaN	60.118	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1786000			4762	1335	2809	2824							0.08902039576844345
ATVMLAPIL	9	Unmodified	_ATVMLAPIL_					0	0	0			REV__nc|ENSG00000120915|P34913-3|EPHX2	REV__nc|ENSG00000120915|P34913-3|EPHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.81298828125	2	464.780439	927.546325	-0.3576	-0.00016621	1.1484	0.00053373	0.79076	0.00036753	464.7808771101857	38.039	0.23818	37.859	37.701	37.939	-0.17929					10	6	2	0	0	0	0.024497	1	3113	3113		20.482	5.8177	1	88439	+		4763	22570	2810	2825	6378	6378					0.07965374207628884
ATVPNTIVVNW	11	Unmodified	_ATVPNTIVVNW_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.3323974609375	2	607.332413	1212.65027	-0.75535	-0.00045875	0.79164	0.00048079	0.036288	2.2039E-05	607.332777654673	80.753	0.80708	80.515	80.206	81.013	-0.23784					54	19	4	0	0	0	0.007307	3	9668	9668;9680;9694		143.37	30.963	1	1387200			4764	4552	2811	2826	6379;6380;6381	6379					0.052453725688792474
ATVPNTIVVNW	11	Unmodified	_ATVPNTIVVNW_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.3324584960938	2	607.332413	1212.65027	-0.034863	-2.1173E-05	-0.099273	-6.0292E-05	-0.13414	-8.1465E-05	607.3322202092851	80.723	0.77998	80.517	80.173	80.953	-0.20633					56	18	4	0	0	0	0.0087747	3	9688	9678;9688;9702		141.52	31.401	1	1374200			4765	4552	2811	2826	6382;6383;6384	6383					0.052453725688792474
ATVPNTIVVNW	11	Unmodified	_ATVPNTIVVNW_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.3320922851562	2	607.332413	1212.65027	-0.32575	-0.00019784	0.2743	0.00016659	-0.051451	-3.1248E-05	607.3324755352866	80.663	0.94752	80.517	80.117	81.064	-0.146					57	22	4	0	0	0	0.015714	3	9652	9652;9663;9676		132.76	32.838	1	1355100			4766	4552	2811	2826	6385;6386;6387	6385					0.052453725688792474
ATVVLKSKFSA	11	Unmodified	_ATVVLKSKFSA_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153750160-153750403:+|nuORF;ENST00000461269.1_1_1:153749094-153750403:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.84326171875	2	575.845156	1149.67576	-0.26488	-0.00015253	-3.539	-0.0020379	-3.8039	-0.0021904	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0183	1	11610	11610		32.751	0.79567	1	4946400			4767	5665	2812	2827	6388	6388					0.10690847091291289
ATVVLKSKFSA	11	Unmodified	_ATVVLKSKFSA_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153750160-153750403:+|nuORF;ENST00000461269.1_1_1:153749094-153750403:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8433227539062	2	575.845156	1149.67576	-0.10957	-6.3095E-05	-3.6823	-0.0021204	-3.7919	-0.0021835	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	0.95664	1	11588	11588		46.457	10.01	1	4935500			4768	5665	2812	2827	6389	6389					0.10690847091291289
ATVVLKSKFSA	11	Unmodified	_ATVVLKSKFSA_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153750160-153750403:+|nuORF;ENST00000461269.1_1_1:153749094-153750403:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8433227539062	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	0.99129	2	11265	11206;11265		38.754	2.3069	1	6382400			4769	5665	2812	2827	6390;6391	6391					0.10690847091291289
ATVVLKSKFSA	11	Unmodified	_ATVVLKSKFSA_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153750160-153750403:+|nuORF;ENST00000461269.1_1_1:153749094-153750403:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8435668945312	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.98542	1	10934	10934		40.058	0.80534	1	1877500			4770	5665	2812	2827	6392	6392					0.10690847091291289
AVAAARPPGPP	11	Unmodified	_AVAAARPPGPP_					0	0	0			REV__nc|ENSG00000143845|Q9NVF9-3|ETNK2	REV__nc|ENSG00000143845|Q9NVF9-3|ETNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7974548339844	2	502.287808	1002.56106	-0.82402	-0.0004139	0.83167	0.00041774	0.007648	3.8415E-06	502.2880443541893	38.353	0.80008	38.27	37.918	38.718	-0.082512					47	21	3	0	0	0	0.024759	1	3225	3225		19.997	0	1	1111100	+		4771	24290	2813	2828	6393	6393					0.05988582399993447
AVAALHSLTL	10	Unmodified	_AVAALHSLTL_					0	0	0			REV__ENSG00000146282|ENST00000369536|RARS2	REV__ENSG00000146282|ENST00000369536|RARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.2980651855469	2	498.297842	994.581131	-0.16286	-8.1152E-05	0.57088	0.00028447	0.40802	0.00020332	498.297763142274	62.014	0.85845	61.787	61.261	62.119	-0.22663					92	22	6	0	0	0	0.55296	1	7160	7160		82.305	0	1	3722200	+		4772	24476	2814	2829	6394	6394					0.0836233333996006
AVAALRGRPS	10	Unmodified	_AVAALRGRPS_					0	0	0		nc|ENSG00000188782|Q7RTX7-2|CATSPER4;ENSG00000188782|ENST00000456354|CATSPER4	nc|ENSG00000188782|Q7RTX7-2|CATSPER4	nc|ENSG00000188782|Q7RTX7-2|CATSPER4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7716979980469	2	499.298707	996.582862	-0.4551	-0.00022723	3.576	0.0017855	3.1209	0.0015583	499.80121272539225	31.161	0.39277	30.976	30.743	31.136	-0.18503					20	9	3	0	0	0	0.03519	1	2034	2034		21.96	13.729	1	91523			4773	9750	2815	2830	6395	6395					0.08443387148565762
AVAAVLTQVVW	11	Unmodified	_AVAAVLTQVVW_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.8408203125	2	578.839874	1155.66519	-1.0395	-0.00060169	1.1513	0.00066644	0.11184	6.474E-05	578.8403345639555	89.909	0.78832	89.781	89.5	90.288	-0.12774					45	18	4	0	0	0	0.25451	1	11005	11005		93.598	36.877	1	833810			4774	6001	2816	2831	6396	6396					0.09358864436853764
AVAAVLTQVVW	11	Unmodified	_AVAAVLTQVVW_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	578.839874	1155.66519	-0.89192	-0.00051628	1.1476	0.00066429	0.2557	0.00014801	578.8403730542952	89.914	0.82525	89.752	89.515	90.34	-0.1626	-0.026325	0.00037605	NaN	93.598	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	808220			4775	6001	2816	2831							0.09358864436853764
AVAAVLTQVVW	11	Unmodified	_AVAAVLTQVVW_					0	0	0		ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1;ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-3|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	ENST00000378892.5_1_9:34637493-34637721:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	578.839874	1155.66519	-0.16772	-9.708E-05	0.16608	9.6133E-05	-0.001636	-9.4698E-07	578.8398355074687	89.94	0.70567	89.802	89.532	90.237	-0.13824	0.023569	-0.00076026	NaN	93.598	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	682680			4776	6001	2816	2831							0.09358864436853764
AVADSIPDV	9	Unmodified	_AVADSIPDV_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2552490234375	2	443.729458	885.444362	0.17998	7.9864E-05	2.1482	0.00095323	2.3282	0.0010331	443.7301879006741	53.795	0.42802	53.795	53.582	54.01	0					24	11	3	0	0	0	0.023775	1	5829	5829		47.916	0	1	208300			4777	10959	2817	2832	6397	6397					-0.002942006104262873
AVADSIPDV	9	Unmodified	_AVADSIPDV_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2548522949219	2	443.729458	885.444362	-0.063897	-2.8353E-05	1.9459	0.00086345	1.882	0.0008351	443.7301272849635	53.825	0.59469	53.678	53.493	54.088	-0.14723					27	16	2	0	0	0	0.024	1	5816	5816		65.803	0	1	272250			4778	10959	2817	2832	6398	6398					-0.002942006104262873
AVAEQDTDDG	10	Unmodified	_AVAEQDTDDG_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7287902832031	2	510.709451	1019.40435	-0.24639	-0.00012584	-3.067	-0.0015664	-3.3134	-0.0016922	511.2114516867776	55.134	0.1423	54.983	54.857	55	-0.15036					5	3	2	0	0	0	0.03519	1	6027	6027		74.255	8.4519	1	43181	+		4779	27574	2818	2833	6399	6399					-0.10457792071656513
AVAKRPVK	8	Unmodified	_AVAKRPVK_					0	0	0			REV__DHX16|p.V76A|1|0.25|ENSG00000204560|chr6:30671255-30671255|A/G|missense_variant	REV__DHX16|p.V76A|1|0.25|ENSG00000204560|chr6:30671255-30671255|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7479553222656	2	434.789987	867.565421	0.097213	4.2267E-05	2.9639	0.0012887	3.0611	0.0013309	434.7895039307822	65.355	0.16718	65.355	65.292	65.46	0					6	4	2	0	0	0	0.027866	1	7758	7758		19.36	0	1	120380	+		4780	19671	2819	2834	6400	6400					0.12634091613551846
AVALIWLV	8	Unmodified	_AVALIWLV_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.7394714355469	2	442.783839	883.553125	-0.58707	-0.00025995	-3.7968	-0.0016812	-4.3838	-0.0019411	442.7821699411335	25.459	0.4853	25.424	25.238	25.723	-0.034395					18	11	2	0	0	0	0.027866	1	1211	1211		16.705	5.8394	1	45950			4781	8364	2820	2835	6401	6401					0.10669055150526674
AVALIWLV	8	Unmodified	_AVALIWLV_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.783839	883.553125	-0.78123	-0.00034592	-3.6348	-0.0016094	-4.4161	-0.0019554	442.78210316858286	25.71	0.49979	25.483	25.271	25.771	-0.22683	0.088845	0.00019658	NaN	16.705	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585160			4782	8364	2820	2835							0.10669055150526674
AVALIWLV	8	Unmodified	_AVALIWLV_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.783839	883.553125	-0.26301	-0.00011646	-3.5981	-0.0015932	-3.8611	-0.0017096	442.7819026460145	25.405	0.54434	25.234	24.997	25.542	-0.17078	-0.16007	0.00022916	NaN	16.705	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492470			4783	8364	2820	2835							0.10669055150526674
AVALIWLV	8	Unmodified	_AVALIWLV_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.783839	883.553125	0.15411	6.8237E-05	-4.3595	-0.0019303	-4.2053	-0.0018621	442.7816812690238	25.52	0.63227	25.348	25.118	25.75	-0.17151	-0.046362	-0.00044511	NaN	16.705	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567790			4784	8364	2820	2835							0.10669055150526674
AVALTYPN	8	Unmodified	_AVALTYPN_					0	0	0			REV__ENSG00000099377|ENST00000297679|HSD3B7	REV__ENSG00000099377|ENST00000297679|HSD3B7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2633056640625	2	424.729261	847.443968	0.092243	3.9179E-05	3.6662	0.0015571	3.7584	0.0015963	424.73055730998584	45.895	1.4021	45.946	44.973	46.375	0.050774					60	40	3	0	0	0	0.027866	1	4465	4465		30.504	0	1	899390	+		4785	21004	2821	2836	6402	6402					0.014144244603812695
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.7530822753906	2	443.753267	885.491981	0.82405	0.00036567	-0.7147	-0.00031715	0.10935	4.8523E-05	443.7528301350914	58.982	0.84099	58.982	58.679	59.52	0					50	22	3	0	0	0	0.02017	1	6719	6719		292.75	120.72	1	3846000			4786	1077	2822	2837	6403	6403					0.04465498380432109
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.7536315917969	2	443.753267	885.491981	1.9569	0.00086836	-1.7856	-0.00079237	0.17125	7.5993E-05	443.75237797797786	59.237	0.98244	59.05	58.684	59.667	-0.18705					56	26	3	0	0	0	0.021624	2	6710	6710;6727		273.38	116.17	1	4016600			4787	1077	2822	2837	6404;6405	6404					0.04465498380432109
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.7533264160156	2	443.753267	885.491981	0.49394	0.00021919	-0.25192	-0.00011179	0.24202	0.0001074	443.75304355783913	58.889	0.91282	58.975	58.666	59.579	0.085686					56	24	3	0	0	0	0.021624	1	6623	6623		273.38	101.35	1	3553300			4788	1077	2822	2837	6406	6406					0.04465498380432109
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.753267	885.491981	-0.016555	-7.3461E-06	0.3213	0.00014258	0.30475	0.00013523	443.7533302567342	59.25	0.96232	59.062	58.584	59.547	-0.18795	0.03458	0.00074737	NaN	292.75	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710520			4789	1077	2822	2837							0.04465498380432109
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.753267	885.491981	0.37948	0.00016839	-0.25905	-0.00011495	0.12043	5.3441E-05	443.7530794857971	59.211	0.68267	59.03	58.791	59.473	-0.18134	0.0023214	0.00023231	NaN	292.75	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818380			4790	1077	2822	2837							0.04465498380432109
AVANIVNSV	9	Unmodified	_AVANIVNSV_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.753267	885.491981	0.71935	0.00031921	-0.51503	-0.00022855	0.20432	9.0666E-05	443.7529307118085	59.315	0.6483	59.067	58.77	59.418	-0.2479	0.039258	5.1201E-06	NaN	292.75	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	770120			4791	1077	2822	2837							0.04465498380432109
AVAPEEPPPS	10	Unmodified	_AVAPEEPPPS_					0	0	0		ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7926940917969	2	497.248015	992.481476	0.64887	0.00032265	-1.1978	-0.00059559	-0.54891	-0.00027294	497.2476105125218	71.482	0.80167	71.193	70.922	71.724	-0.28858					25	20	2	0	0	0	0.03519	1	8633	8633		35.618	10.168	1	298830			4792	2781	2823	2838	6407	6407					-0.015065290646703033
AVAPVGAPKV	10	Unmodified	_AVAPVGAPKV_					0	0	0		KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7817687988281	2	454.781828	907.549102	-0.28475	-0.0001295	0.021077	9.5856E-06	-0.26367	-0.00011991	454.7817024082047	44.675	1.0971	44.675	44.348	45.445	0					73	31	4	0	0	0	0.41195	2	4288	4276;4288		97.473	20.626	1	4542700			4793	17810	2824	2839	6408;6409	6409					0.0916296565679886
AVAPVGAPKV	10	Unmodified	_AVAPVGAPKV_					0	0	0		KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7818908691406	2	454.781828	907.549102	-0.83311	-0.00037888	0.65969	0.00030002	-0.17341	-7.8865E-05	454.78199371393833	44.785	0.99183	44.636	44.39	45.381	-0.1488					70	28	4	0	0	0	0.41195	2	4282	4282;4295		97.473	20.626	1	4325600			4794	17810	2824	2839	6410;6411	6410					0.0916296565679886
AVAPVGAPKV	10	Unmodified	_AVAPVGAPKV_					0	0	0		KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7816467285156	2	454.781828	907.549102	-0.055176	-2.5093E-05	-0.18204	-8.2786E-05	-0.23721	-0.00010788	454.7816263647051	44.658	0.99422	44.695	44.375	45.37	0.036903					64	28	4	0	0	0	0.41195	2	4214	4214;4223		97.473	20.626	1	4610100			4795	17810	2824	2839	6412;6413	6412					0.0916296565679886
AVAPVGAPKV	10	Unmodified	_AVAPVGAPKV_					0	0	0		KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.78118896484375	2	454.781828	907.549102	-0.71583	-0.00032555	0.33136	0.0001507	-0.38447	-0.00017485	454.7818025338843	44.778	0.68839	44.678	44.431	45.12	-0.099445					41	17	4	0	0	0	0.49678	2	4201	4201;4213		88.643	20.158	1	1553800			4796	17810	2824	2839	6414;6415	6414					0.0916296565679886
AVAPVGAPKV	10	Unmodified	_AVAPVGAPKV_					0	0	0		KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7815246582031	2	454.781828	907.549102	-0.61489	-0.00027964	0.085315	3.8799E-05	-0.52958	-0.00024084	454.7817092317124	44.888	0.62777	44.636	44.391	45.019	-0.25252					42	15	4	0	0	0	0.49678	1	4207	4207		88.643	20.158	1	1526800			4797	17810	2824	2839	6416	6416					0.0916296565679886
AVAPVGAPKV	10	Unmodified	_AVAPVGAPKV_					0	0	0		KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	KRTAP5-10|p.G93Afs*124|1|0.08|ENSG00000204572|chr11:71565860-71565860|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.7815856933594	2	454.781828	907.549102	-0.67465	-0.00030682	0.20339	9.2496E-05	-0.47126	-0.00021432	454.78176778700987	44.868	0.51108	44.657	44.399	44.91	-0.21109					30	12	3	0	0	0	0.52589	1	4207	4207		85.359	19.556	1	1658500			4798	17810	2824	2839	6417	6417					0.0916296565679886
AVARDSLQV	9	Unmodified	_AVARDSLQV_					0	0	0		ENST00000496609.1_1_7:33945135-33977005:+|nuORF	ENST00000496609.1_1_7:33945135-33977005:+|nuORF	ENST00000496609.1_1_7:33945135-33977005:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7692565917969	2	479.769448	957.524344	-0.98834	-0.00047418	1.3383	0.00064208	0.34997	0.00016791	479.7696673021737	51.542	1.1575	51.629	51.077	52.235	0.087006					80	31	3	0	0	0	0.42604	1	5408	5408		64.207	0	1	4032900			4799	15571	2825	2840	6418	6418					0.043882857834205424
AVARGPPAR	9	Unmodified	_AVARGPPAR_					0	0	0		ENST00000497048.5_1_9:110250523-110250694:-|nuORF	ENST00000497048.5_1_9:110250523-110250694:-|nuORF	ENST00000497048.5_1_9:110250523-110250694:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2513122558594	2	447.767043	893.519533	-0.57285	-0.0002565	-0.73418	-0.00032874	-1.307	-0.00058525	447.7663127005234	25.166	0.85891	25.166	24.964	25.823	0					32	20	3	0	0	0	0.024412	1	1195	1195		17.365	3.2278	1	122150			4800	15582	2826	2841	6419	6419					0.06851446431312525
AVASKEDSW	9	Unmodified	_AVASKEDSW_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.7378845214844	2	496.737814	991.461075	-0.30343	-0.00015072	0.3782	0.00018787	0.074773	3.7143E-05	496.737891563827	33.703	0.56211	33.472	33.193	33.755	-0.23107					44	13	4	0	0	0	0.2508	2	2432	2420;2432		82.241	13.454	1	2055800			4801	2884	2827	2842	6420;6421	6421					-0.03499699724477523
AVATVISR	8	Unmodified	_AVATVISR_					0	0	0			REV__ENSG00000108932|ENST00000580666|SLC16A6	REV__ENSG00000108932|ENST00000580666|SLC16A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	408.7322998046875	2	408.750527	815.486502	0.12597	5.1491E-05	4.3616	0.0017828	4.4875	0.0018343	408.75245701406897	31.063	0.21161	31.063	30.961	31.173	0					7	4	2	0	0	0	0.027866	1	2057	2057		19.36	0	1	12431	+		4802	21770	2828	2843	6422	6422					0.07137819588626826
AVAVSAAPVT	10	Unmodified	_AVAVSAAPVT_					0	0	0			REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2552490234375	2	443.255643	884.496732	0.16809	7.4505E-05	0.19233	8.5249E-05	0.36041	0.00015975	443.2556926997619	53.757	1.0211	53.757	53.372	54.393	0					80	28	4	0	0	0	0.089914	4	5829	5817;5829;5842;5854		138.24	32.671	1	8435800	+		4803	33988	2829	2844	6423;6424;6425;6426	6424					0.049863825231796
AVAVSAAPVT	10	Unmodified	_AVAVSAAPVT_					0	0	0			REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.25537109375	2	443.255643	884.496732	-0.089283	-3.9575E-05	0.54788	0.00024285	0.4586	0.00020328	443.25580655541444	53.806	1.198	53.659	53.346	54.544	-0.14723					85	33	4	0	0	0	0.089914	4	5806	5806;5816;5830;5842		138.24	21.339	1	9346100	+		4804	33988	2829	2844	6427;6428;6429;6430	6427					0.049863825231796
AVAVSAAPVT	10	Unmodified	_AVAVSAAPVT_					0	0	0			REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2547607421875	2	443.255643	884.496732	-0.26773	-0.00011867	0.80887	0.00035854	0.54114	0.00023986	443.25589625382344	53.624	0.92123	53.72	53.371	54.292	0.095669					83	25	4	0	0	0	0.089914	4	5729	5719;5729;5742;5755		138.24	29.486	1	9013100	+		4805	33988	2829	2844	6431;6432;6433;6434	6432					0.049863825231796
AVAVSAAPVT	10	Unmodified	_AVAVSAAPVT_					0	0	0			REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	443.255643	884.496732	0.16809	7.4505E-05	0.19233	8.5249E-05	0.36041	0.00015975	443.2556926997619	53.757	1.0211	53.757	53.372	54.393	0	0.045344	-0.00027828	NaN	138.24	80	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8435800	+		4806	33988	2829	2844							0.049863825231796
AVAVSAAPVT	10	Unmodified	_AVAVSAAPVT_					0	0	0			REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	443.255643	884.496732	-0.089283	-3.9575E-05	0.54788	0.00024285	0.4586	0.00020328	443.25580655541444	53.806	1.198	53.659	53.346	54.544	-0.14723	-0.053071	3.6928E-05	NaN	138.24	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9346100	+		4807	33988	2829	2844							0.049863825231796
AVAVSAAPVT	10	Unmodified	_AVAVSAAPVT_					0	0	0			REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	REV__ENST00000511773.5_1_7:102181988-102185197:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	443.255643	884.496732	-0.26773	-0.00011867	0.80887	0.00035854	0.54114	0.00023986	443.25589625382344	53.624	0.92123	53.72	53.371	54.292	0.095669	0.0077274	0.0002683	NaN	138.24	83	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9013100	+		4808	33988	2829	2844							0.049863825231796
AVAWMKSK	8	Unmodified	_AVAWMKSK_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2770690917969	2	460.754756	919.494958	0.93015	0.00042857	3.0484	0.0014045	3.9785	0.0018331	460.75639845712936	20.28	0.72881	20.085	19.706	20.435	-0.19577					27	14	3	0	0	0	0.027866	1	534	534		11.511	0	1	74699			4809	8193	2830	2845	6435	6435					0.03199050233581602
AVAWPVQP	8	Unmodified	_AVAWPVQP_					0	0	0			REV__ENST00000587629.5_1_17:26975890-26975935:-|nuORF	REV__ENST00000587629.5_1_17:26975890-26975935:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7799987792969	2	434.239796	866.465038	-0.54847	-0.00023817	-4.0807	-0.001772	-4.6292	-0.0020102	434.23792908996165	36.05	0.54508	35.845	35.581	36.127	-0.20518					25	15	2	0	0	0	0.027866	1	2777	2777		44.531	0	1	607230	+		4810	35629	2831	2846	6436	6436					0.02646434559892441
AVAWVLTML	9	Unmodified	_AVAWVLTML_					0	0	0		ENST00000561232.5_1_15:67811374-67814126:-|nuORF	ENST00000561232.5_1_15:67811374-67814126:-|nuORF	ENST00000561232.5_1_15:67811374-67814126:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.73779296875	2	502.285889	1002.55722	-0.18573	-9.3287E-05	2.8022	0.0014075	2.6164	0.0013142	502.2888717980446	35.888	0.48226	35.671	35.43	35.913	-0.21661					18	13	2	0	0	0	0.024517	1	2799	2799		19.36	12.167	1	216280			4811	16819	2832	2847	6437	6437					0.05604776581890292
AVAWVLTML	9	Unmodified	_AVAWVLTML_					0	0	0		ENST00000561232.5_1_15:67811374-67814126:-|nuORF	ENST00000561232.5_1_15:67811374-67814126:-|nuORF	ENST00000561232.5_1_15:67811374-67814126:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.285889	1002.55722	-0.70111	-0.00035216	8.8785	0.0044595	8.1773	0.0041074	502.28915258092456	35.358	0.33436	35.358	35.235	35.57	0	-0.17124	0.0038495	NaN	19.36	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120010			4812	16819	2832	2847							0.05604776581890292
AVAYSVVPN	9	Unmodified	_AVAYSVVPN_					0	0	0			REV__ENSG00000267631|ENST00000301407|CGB1	REV__ENSG00000267631|ENST00000301407|CGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.734130859375	2	460.247818	918.481082	0.66989	0.00030832	2.5343	0.0011664	3.2042	0.0014747	460.2486540623987	69.587	0.90959	69.294	69.01	69.92	-0.29292					33	22	2	0	0	0	0.024457	1	8330	8330		21.96	0	1	119590	+		4813	29148	2833	2848	6438	6438					0.018580960061512997
AVAYSVVPN	9	Unmodified	_AVAYSVVPN_					0	0	0			REV__ENSG00000267631|ENST00000301407|CGB1	REV__ENSG00000267631|ENST00000301407|CGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.247818	918.481082	0.054339	2.501E-05	3.2565	0.0014988	3.3109	0.0015238	460.2489551824564	69.497	0.70984	69.512	69.245	69.955	0.015121	0.041378	0.00037041	NaN	51.335	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101570	+		4814	29148	2833	2848							0.018580960061512997
AVDKIMKDL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AVDKIMKDL_					1	0	0		S100A10|p.Q61H|1|0.16|ENSG00000197747|chr1:151983274-151983274|C/A|missense_variant;ENSG00000197747|ENST00000368811|S100A10	S100A10|p.Q61H|1|0.16|ENSG00000197747|chr1:151983274-151983274|C/A|missense_variant	S100A10|p.Q61H|1|0.16|ENSG00000197747|chr1:151983274-151983274|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.796630859375	2	537.796817	1073.57908	-0.34757	-0.00018692	1.8102	0.00097354	1.4627	0.00078662	537.7967378860309	75.724	1.3803	75.736	75.436	76.816	0.011635					109	35	5	0	0	0	0.071379	2	9213	9213;9270		120.87	13.861	1	12487000			4815	10043	2834	2849	6439;6440	6439					0.045235365398411886
AVDLFLLSS	9	Unmodified	_AVDLFLLSS_					0	0	0		SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant	SEC24B|p.H1112Ifs*2|1|0.28|ENSG00000138802|chr4:109531464-109531464|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.7708740234375	2	482.771126	963.527698	-0.1083	-5.2282E-05	1.1041	0.00053304	0.99584	0.00048076	482.7709378915131	82.871	0.8622	82.731	82.434	83.296	-0.14014					54	19	4	0	0	0	0.83071	1	10004	10004		37.159	3.6661	1	726150			4816	5289	2835	2850	6441	6441					0.04447535837448413
AVDPRFLAY	9	Unmodified	_AVDPRFLAY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2814331054688	2	526.282192	1050.54983	-0.19676	-0.00010355	-0.21765	-0.00011454	-0.41441	-0.0002181	526.2818374822594	63.263	1.1823	63.042	62.691	63.873	-0.22097					60	29	4	0	0	0	0.6238	2	7132	7132;7145		51.193	3.2771	1	2580300			4817	2254	2836	2851	6442;6443	6442					0.026577603058285604
AVDPRFLAY	9	Unmodified	_AVDPRFLAY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2823486328125	2	526.282192	1050.54983	-0.3222	-0.00016957	-0.29986	-0.00015781	-0.62206	-0.00032738	526.281832150026	63.246	1.1014	63.062	62.788	63.889	-0.18386					54	27	3	0	0	0	0.48817	2	7148	7148;7160		60.118	17.722	1	2690800			4818	2254	2836	2851	6444;6445	6444					0.026577603058285604
AVDPRFLAY	9	Unmodified	_AVDPRFLAY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2823486328125	2	526.282192	1050.54983	0.33262	0.00017505	-0.68516	-0.00036059	-0.35254	-0.00018554	526.2815619081739	63.388	1.1218	63.13	62.835	63.956	-0.25824					61	28	4	0	0	0	0.64897	1	7153	7153		49.536	15.364	1	2881800			4819	2254	2836	2851	6446	6446					0.026577603058285604
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7589111328125	2	525.758746	1049.50294	-0.64599	-0.00033963	0.5418	0.00028486	-0.10419	-5.4777E-05	525.7590266496329	57.084	1.2822	56.917	56.443	57.725	-0.1672					106	33	4	0	0	0	0.00015698	6	6202	6191;6202;6214;6226;6239;6252		199.7	94.958	1	25905000			4820	4580	2837	2852	6447;6448;6449;6450;6451;6452	6448					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7591552734375	2	525.758746	1049.50294	0.15925	8.3726E-05	-0.40111	-0.00021088	-0.24186	-0.00012716	525.7585219736187	57.182	1.3739	56.98	56.443	57.817	-0.20209					116	36	4	0	0	0	0.014535	5	6219	6208;6219;6231;6243;6256		167.23	84.924	1	26728000			4821	4580	2837	2852	6453;6454;6455;6456;6457	6454					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7587890625	2	525.758746	1049.50294	-0.13368	-7.0285E-05	-0.12144	-6.385E-05	-0.25513	-0.00013414	525.75870880832	57.237	1.2066	57.012	56.504	57.711	-0.22479					88	31	4	0	0	0	0.040557	5	6225	6202;6213;6225;6237;6251		150.36	91.58	1	24523000			4822	4580	2837	2852	6458;6459;6460;6461;6462	6460					-0.01983144035943951
AVDPTSGQLY	10	Unmodified	_AVDPTSGQLY_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.758746	1049.50294	-1.0088	-0.00053036	-4.2328	-0.0022254	-5.2416	-0.0027558	525.757315397319	57.013	0.20707	57.013	56.904	57.111	0	0.032179	-0.0044532	NaN	199.7	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51795			4823	4580	2837	2852							-0.01983144035943951
AVDSGVVGLL	10	Unmodified	_AVDSGVVGLL_					0	0	0			REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.28680419921875	2	465.26875	928.522947	0.17678	8.2248E-05	-2.0365	-0.00094754	-1.8598	-0.00086529	465.26782149213517	76.513	0.66916	76.262	75.944	76.614	-0.25162					20	15	2	0	0	0	0.03519	1	9099	9099		55.504	18.345	1	72648	+		4824	24747	2838	2853	6463	6463					0.05582651694669494
AVDTRVPQPAP	11	Unmodified	_AVDTRVPQPAP_					0	0	0			REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8143310546875	2	575.814387	1149.61422	-0.14217	-8.1864E-05	-0.54049	-0.00031122	-0.68266	-0.00039308	575.8140611733836	47.606	0.89416	47.419	47.084	47.978	-0.18684					74	23	5	0	0	0	0.87847	1	4678	4678		52.937	3.4007	1	8164400	+		4825	25960	2839	2854	6464	6464					0.04539915392001603
AVEKLVQVA	9	Unmodified	_AVEKLVQVA_					0	0	0		HID1|p.G80V|1|0.29|ENSG00000167861|chr17:74963888-74963888|C/A|missense_variant	HID1|p.G80V|1|0.29|ENSG00000167861|chr17:74963888-74963888|C/A|missense_variant	HID1|p.G80V|1|0.29|ENSG00000167861|chr17:74963888-74963888|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7926940917969	2	478.792392	955.570232	0.098262	4.7047E-05	-0.23603	-0.00011301	-0.13777	-6.5964E-05	478.79205258345297	50.925	0.55721	50.776	50.561	51.118	-0.14916					47	15	4	0	0	0	0.53979	1	5336	5336		56.721	8.8055	1	7089500			4826	17735	2840	2855	6465	6465					0.09066930965650499
AVEKLVQVA	9	Unmodified	_AVEKLVQVA_					0	0	0		HID1|p.G80V|1|0.29|ENSG00000167861|chr17:74963888-74963888|C/A|missense_variant	HID1|p.G80V|1|0.29|ENSG00000167861|chr17:74963888-74963888|C/A|missense_variant	HID1|p.G80V|1|0.29|ENSG00000167861|chr17:74963888-74963888|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7924499511719	2	478.792392	955.570232	-0.3205	-0.00015346	0.06876	3.2922E-05	-0.25174	-0.00012053	478.79221035259803	50.588	0.51813	50.669	50.477	50.995	0.080994					46	14	4	0	0	0	0.67687	1	5240	5240		47.657	1.6851	1	6525700			4827	17735	2840	2855	6466	6466					0.09066930965650499
AVEPGRPPL	9	Unmodified	_AVEPGRPPL_					0	0	0		ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.26934814453125	2	468.269084	934.523616	-0.28939	-0.00013551	0.32376	0.00015161	0.034369	1.6094E-05	468.26914846799536	43.033	1.1605	43.033	42.534	43.695	0					95	31	4	0	0	0	0.20967	1	3999	3999		87.754	5.4493	1	6354200			4828	7792	2841	2856	6467	6467					0.053734911343553904
AVEPGRPPL	9	Unmodified	_AVEPGRPPL_					0	0	0		ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.26922607421875	2	468.269084	934.523616	-0.048047	-2.2499E-05	0.071986	3.3709E-05	0.02394	1.121E-05	468.26901432019275	43.181	1.1925	43.042	42.558	43.751	-0.13929					103	32	4	0	0	0	0.11848	2	4011	3998;4011		106.42	12.409	1	6396800			4829	7792	2841	2856	6468;6469	6469					0.053734911343553904
AVEPGRPPL	9	Unmodified	_AVEPGRPPL_					0	0	0		ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2694091796875	2	468.269084	934.523616	1.0324	0.00048344	-1.0938	-0.00051218	-0.06136	-2.8733E-05	468.2684472312194	43.079	1.2005	43.11	42.646	43.847	0.030827					97	32	4	0	0	0	0.20967	3	3954	3942;3954;3979		87.754	16.459	1	5775700			4830	7792	2841	2856	6470;6471;6472	6471					0.053734911343553904
AVEWVRRLRRL	11	Unmodified	_AVEWVRRLRRL_					0	0	0			REV__ENST00000343484.9_1_20:62694559-62694661:+|nuORF	REV__ENST00000343484.9_1_20:62694559-62694661:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.30279541015625	3	485.300271	1452.87898	1.2145	0.00058938	3.452	0.0016753	4.6665	0.0022647	485.30191744492015	17.588	1.2885	17.434	17.159	18.448	-0.15403					66	25	5	0	0	0	1.09	1	210	210		14.086	0.57807	1	454660	+		4831	30667	2842	2857	6473	6473					0.17066009656241476
AVFEYINV	8	Unmodified	_AVFEYINV_					0	0	0			REV__ENST00000533623.1_1_11:123988218-123988639:+|nuORF;REV__ENSG00000110002|ENST00000456829|VWA5A;REV__nc|ENSG00000110002|O00534-2|VWA5A	REV__nc|ENSG00000110002|O00534-2|VWA5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.8036193847656	2	477.750193	953.485833	-0.37542	-0.00017936	-0.27701	-0.00013234	-0.65243	-0.0003117	477.7504076009	91.353	0.3372	91.353	91.174	91.511	0					16	7	3	0	0	0	0.027866	1	11543	11543		47.916	1.9636	1	62217	+		4832	21829;36562;34612	2843	2858	6474	6474					0.007229801489074816
AVFKVVGVS	9	Unmodified	_AVFKVVGVS_					0	0	0			REV__CD36|p.M455K|1|0.18|ENSG00000135218|chr7:80674092-80674092|T/A|missense_variant	REV__CD36|p.M455K|1|0.18|ENSG00000135218|chr7:80674092-80674092|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.7483825683594	2	453.276378	904.538203	-0.3726	-0.00016889	0.14098	6.3905E-05	-0.23162	-0.00010499	453.27646155919126	43.249	0.49211	43.011	42.719	43.211	-0.23736					16	12	2	0	0	0	0.024457	1	3913	3913		21.96	0	1	80807	+		4833	19275	2844	2859	6475	6475					0.08211563282532097
AVFLPANLL	9	Unmodified	_AVFLPANLL_					0	0	0		ENST00000541206.6_1_16:88769377-88769932:-|nuORF	ENST00000541206.6_1_16:88769377-88769932:-|nuORF	ENST00000541206.6_1_16:88769377-88769932:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7355651855469	2	479.292028	956.569503	-0.56071	-0.00026874	-2.9121	-0.0013957	-3.4728	-0.0016645	479.2907532229915	60.332	0.90059	60.156	59.813	60.714	-0.1761					37	22	3	0	0	0	0.024381	1	6701	6701		37.159	10.112	1	241300			4834	16434	2845	2860	6476	6476					0.08948136316621458
AVFMKASRKML	11	Unmodified	_AVFMKASRKML_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2539367675781	3	427.910516	1280.70972	-0.2689	-0.00011507	-2.5802	-0.0011041	-2.8491	-0.0012192	427.9092515286257	23.01	0.97968	23.084	22.884	23.864	0.073954					45	22	3	0	0	0	0.024743	1	856	856		36.318	10.254	1	388990			4835	6750	2846	2861	6477	6477					0.08059228987008282
AVFTPTAIL	9	Unmodified	_AVFTPTAIL_					0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7745056152344	2	466.776211	931.537869	0.012378	5.7778E-06	-3.4067	-0.0015902	-3.3943	-0.0015844	466.774504831433	19.567	0.53164	19.448	19.2	19.731	-0.11872					25	10	4	0	0	0	0.92825	1	411	411		30.504	4.9296	1	177590	+		4836	27114	2847	2862	6478	6478					0.06936143562643338
AVFTTGQHW	9	Unmodified	_AVFTTGQHW_					0	0	0		ENSG00000165272|ENST00000297991|AQP3;ENST00000494313.1_1_9:33442043-33443074:-|nuORF	ENSG00000165272|ENST00000297991|AQP3	ENSG00000165272|ENST00000297991|AQP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.7587280273438	2	523.756341	1045.49813	-1.4252	-0.00074643	1.4357	0.00075193	0.010496	5.4973E-06	523.7568702062606	52.341	0.85699	52.072	51.656	52.513	-0.26903					43	22	3	0	0	0	0.6504	1	5431	5431		49.442	8.6634	1	2844100			4837	7389	2848	2863	6479	6479					-0.02279983388052642
AVFTTGQHW	9	Unmodified	_AVFTTGQHW_					0	0	0		ENSG00000165272|ENST00000297991|AQP3;ENST00000494313.1_1_9:33442043-33443074:-|nuORF	ENSG00000165272|ENST00000297991|AQP3	ENSG00000165272|ENST00000297991|AQP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.7567749023438	2	523.756341	1045.49813	0.11852	6.2076E-05	-0.25882	-0.00013556	-0.14029	-7.348E-05	523.7560105330572	52.163	0.95853	51.979	51.598	52.557	-0.18404					51	24	3	0	0	0	0.32811	1	5400	5400		71.877	19.578	1	2547600			4838	7389	2848	2863	6480	6480					-0.02279983388052642
AVGACGTLGLQ	11	Unmodified	_AVGACGTLGLQ_					0	0	0			REV__ENSG00000101751|ENST00000579534|POLI	REV__ENSG00000101751|ENST00000579534|POLI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.3229064941406	2	495.257859	988.501166	-0.40849	-0.00020231	-2.2637	-0.0011211	-2.6722	-0.0013234	495.25665109243664	63.942	1.0896	63.714	63.212	64.302	-0.22773					69	27	4	0	0	0	0.024747	1	7304	7304		31.53	0	1	1507600	+		4839	21254	2849	2864	6481	6481					0.006455236744386639
AVGACGTLGLQ	11	Unmodified	_AVGACGTLGLQ_					0	0	0			REV__ENSG00000101751|ENST00000579534|POLI	REV__ENSG00000101751|ENST00000579534|POLI	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.257859	988.501166	1.6285	0.00080653	0.18072	8.9504E-05	1.8092	0.00089603	495.25720978829764	63.755	0.3585	63.755	63.522	63.88	0	-0.027336	0.0022469	NaN	24.519	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147140	+		4840	21254	2849	2864							0.006455236744386639
AVGACGTLGLQ	11	Unmodified	_AVGACGTLGLQ_					0	0	0			REV__ENSG00000101751|ENST00000579534|POLI	REV__ENSG00000101751|ENST00000579534|POLI	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.257859	988.501166	1.8107	0.00089675	-1.0924	-0.00054103	0.71824	0.00035572	495.25697643754415	63.84	0.35588	63.886	63.583	63.939	0.045502	0.10359	0.00098582	NaN	24.519	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139560	+		4841	21254	2849	2864							0.006455236744386639
AVGATQIAH	9	Unmodified	_AVGATQIAH_					0	0	0			REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.23858642578125	2	434.237784	866.461016	-0.71698	-0.00031134	1.2518	0.00054356	0.53478	0.00023222	434.2381682653327	35.984	1.047	35.984	35.531	36.578	0					63	28	3	0	0	0	0.29158	1	2805	2805		76.774	2.7994	1	2249200	+		4842	31988	2850	2865	6482	6482					0.022443450661739917
AVGATQIAH	9	Unmodified	_AVGATQIAH_					0	0	0			REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7799072265625	2	434.237784	866.461016	-0.71698	-0.00031134	1.2518	0.00054356	0.53478	0.00023222	434.2381682653327	35.984	1.047	35.984	35.531	36.578	0					63	28	3	0	0	0	0.023635	1	2810	2810		76.774	26.75	1	2249200	+		4843	31988	2850	2865	6483	6483					0.022443450661739917
AVGATQIAH	9	Unmodified	_AVGATQIAH_					0	0	0			REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.780029296875	2	434.237784	866.461016	-0.94489	-0.00041031	1.5596	0.00067725	0.61475	0.00026695	434.23826174872823	35.836	1.2405	35.793	35.25	36.491	-0.042454					64	33	3	0	0	0	0.023181	1	2775	2775		60.972	25.354	1	2225200	+		4844	31988	2850	2865	6484	6484					0.022443450661739917
AVGATQIAH	9	Unmodified	_AVGATQIAH_					0	0	0			REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2386169433594	2	434.237784	866.461016	-0.10923	-4.7431E-05	0.70367	0.00030556	0.59445	0.00025813	434.2378950323531	35.882	1.1607	35.926	35.459	36.619	0.04406					64	31	3	0	0	0	0.17822	1	2738	2738		93.195	15.878	1	2048500	+		4845	31988	2850	2865	6485	6485					0.022443450661739917
AVGATQIAH	9	Unmodified	_AVGATQIAH_					0	0	0			REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.77978515625	2	434.237784	866.461016	-0.10923	-4.7431E-05	0.70367	0.00030556	0.59445	0.00025813	434.2378950323531	35.882	1.1607	35.926	35.459	36.619	0.04406					64	31	3	0	0	0	0.023775	1	2777	2777		38.806	14.603	1	2048500	+		4846	31988	2850	2865	6486	6486					0.022443450661739917
AVGATQIAH	9	Unmodified	_AVGATQIAH_					0	0	0			REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7800598144531	2	434.237784	866.461016	0.94198	0.00040904	-0.86471	-0.00037549	0.07727	3.3554E-05	434.23721744452786	35.961	0.55038	35.763	35.542	36.093	-0.19829					31	15	3	0	0	0	0.023007	1	2758	2758		76.774	5.4784	1	550190	+		4847	31988	2850	2865	6487	6487					0.022443450661739917
AVGAVPRGAP	10	Unmodified	_AVGAVPRGAP_					0	0	0			REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2755432128906	2	447.761426	893.5083	-0.52964	-0.00023715	0.49293	0.00022071	-0.036715	-1.644E-05	447.7614490895706	39.98	0.4873	39.868	39.568	40.055	-0.11223					19	12	2	0	0	0	0.03519	1	3425	3425		17.365	0	1	79458	+		4848	29939	2851	2866	6488	6488					0.05728624337189103
AVGAVPRGAP	10	Unmodified	_AVGAVPRGAP_					0	0	0			REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	REV__ENST00000290881.11_1_16:67217371-67217884:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	447.761426	893.5083	0.38654	0.00017308	-0.13677	-6.1239E-05	0.24978	0.00011184	447.7609831081406	39.887	0.47905	39.887	39.696	40.176	0	0.0097486	-0.00038816	NaN	17.365	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117620	+		4849	29939	2851	2866							0.05728624337189103
AVGESHLVMN	10	Unmodified	_AVGESHLVMN_					0	0	0			REV__ENST00000540992.1_1_12:16666501-16667302:+|nuORF	REV__ENST00000540992.1_1_12:16666501-16667302:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2631225585938	2	528.760766	1055.50698	-0.38267	-0.00020234	1.0327	0.00054605	0.65002	0.0003437	529.2630245578958	100.27	0.48433	100.28	100.07	100.55	0.010117					21	11	3	0	0	0	0.88896	1	12797	12797		54.776	1.4249	1	190600	+		4850	34762	2852	2867	6489	6489					-0.018553778138766575
AVGGGWPAASP	11	Unmodified	_AVGGGWPAASP_					0	0	0			REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	REV__ENST00000242719.3_1_1:51702154-51702313:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.78790283203125	2	485.243067	968.47158	-0.43389	-0.00021054	3.6642	0.0017781	3.2304	0.0015675	485.2446617680899	43.144	0.30822	42.918	42.753	43.061	-0.22597					16	7	3	0	0	0	0.024766	1	3899	3899		27.882	1.0861	1	201090	+		4851	29456	2853	2868	6490	6490					-0.013916722793965164
AVGHGTVSV	9	Unmodified	_AVGHGTVSV_					0	0	0		ENST00000467101.5_1_20:60776842-60777190:+|nuORF	ENST00000467101.5_1_20:60776842-60777190:+|nuORF	ENST00000467101.5_1_20:60776842-60777190:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2408142089844	2	413.72451	825.434466	-0.38247	-0.00015824	0.89118	0.0003687	0.50872	0.00021047	413.7247176916207	30.615	0.54274	30.689	30.502	31.045	0.074314					31	12	4	0	0	0	0.024412	1	1946	1946		40.573	12.318	1	414460			4852	14827	2854	2869	6491	6491					0.014766561748615459
AVGKKKPTT	9	Unmodified	_AVGKKKPTT_					0	0	0			REV__ENSG00000122884|ENST00000394890|P4HA1	REV__ENSG00000122884|ENST00000394890|P4HA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2925109863281	2	465.292559	928.570566	0.42767	0.00019899	-0.44252	-0.0002059	-0.014849	-6.9092E-06	465.29229069226864	19.333	0.93831	19.173	18.836	19.774	-0.16079					49	18	5	0	0	0	0.29158	1	412	412		76.774	5.4784	1	909340	+		4853	22669	2855	2870	6492	6492					0.10342350685493784
AVGKWLSI	8	Unmodified	_AVGKWLSI_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.2573547363281	2	437.263271	872.511988	-0.38139	-0.00016677	-4.195	-0.0018343	-4.5764	-0.0020011	437.26141989133976	31.308	0.65395	31.067	30.753	31.407	-0.24109					31	16	3	0	0	0	0.027866	1	2024	2024		29.15	16.943	1	615300			4854	8879	2856	2871	6493	6493					0.07063294111037521
AVGKWLSI	8	Unmodified	_AVGKWLSI_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.263271	872.511988	-0.77177	-0.00033747	-3.8927	-0.0017021	-4.6645	-0.0020396	437.26150724510006	30.836	0.83468	30.836	30.508	31.343	0	0.045444	0.0003151	NaN	29.15	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245030			4855	8879	2856	2871							0.07063294111037521
AVGKWLSI	8	Unmodified	_AVGKWLSI_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	437.263271	872.511988	-0.22526	-9.8499E-05	-4.5836	-0.0020043	-4.8089	-0.0021028	437.2611939420759	30.788	0.7995	30.8	30.541	31.34	0.011797	0.0088368	-0.00028917	NaN	29.15	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219510			4856	8879	2856	2871							0.07063294111037521
AVGKWLSI	8	Unmodified	_AVGKWLSI_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	437.263271	872.511988	-0.26192	-0.00011453	-4.5141	-0.0019738	-4.776	-0.0020884	437.26120907870614	30.531	0.70673	30.606	30.296	31.002	0.074314	-0.18533	-0.00022834	NaN	29.15	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324980			4857	8879	2856	2871							0.07063294111037521
AVGKWLSI	8	Unmodified	_AVGKWLSI_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.263271	872.511988	-0.53998	-0.00023611	-4.1589	-0.0018185	-4.6989	-0.0020547	437.261450621267	30.824	0.66652	30.646	30.164	30.831	-0.17818	-0.14491	8.2262E-05	NaN	29.15	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498840			4858	8879	2856	2871							0.07063294111037521
AVGLGRVAPD	10	Unmodified	_AVGLGRVAPD_					0	0	0			REV__ENST00000574415.5_1_16:3029815-3030286:-|nuORF	REV__ENST00000574415.5_1_16:3029815-3030286:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7720947265625	2	477.771991	953.529429	-0.11572	-5.5286E-05	-0.9542	-0.00045589	-1.0699	-0.00051118	477.77176663704483	44.796	1.2979	44.833	44.241	45.539	0.0369					108	37	5	0	0	0	0.79525	1	4225	4225		60.972	0.85368	1	13985000	+		4859	35446	2857	2872	6494	6494					0.05080589646024691
AVGLSVLVAP	10	Unmodified	_AVGLSVLVAP_					0	0	0			REV__ENST00000496560.1_1_6:32001776-32002287:+|nuORF	REV__ENST00000496560.1_1_6:32001776-32002287:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2771911621094	2	463.289485	924.564418	0.16128	7.4721E-05	0.12099	5.6052E-05	0.28227	0.00013077	463.28952762407135	49.074	0.85363	49.074	48.619	49.473	0					33	23	2	0	0	0	0.03519	1	5067	5067		53.351	12.779	1	535120	+		4860	33828	2858	2873	6495	6495					0.09911832453997249
AVGNWCKIKV	10	Unmodified	_AVGNWCKIKV_					0	0	0			REV__ENSG00000141552|ENST00000344877|ANAPC11	REV__ENSG00000141552|ENST00000344877|ANAPC11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.3111572265625	2	559.312969	1116.61138	-0.36635	-0.0002049	1.472	0.00082332	1.1057	0.00061841	559.3130576080923	104	1.1847	103.87	102.87	104.06	-0.12928					42	28	2	0	0	0	1.0781	1	12946	12946		35.618	4.0885	1	106820	+		4861	24104	2859	2874	6496	6496					0.05774368733477786
AVGVYSAKN	9	Unmodified	_AVGVYSAKN_					0	0	0		ENSG00000160072|ENST00000673477|ATAD3B;ATAD3A|p.R534Efs*5|1|0.18|ENSG00000197785|chr1:1527811-1527812|-/G|frameshift_variant;nc|ENSG00000197785|Q9NVI7-3|ATAD3A;ENSG00000197785|ENST00000378756|ATAD3A;nc|ENSG00000160072|Q5T9A4-3|ATAD3B;ENST00000472194.6_1_1:1413873-1431194:+|nuORF;nc|ENSG00000197785|Q9NVI7|ATAD3A;ENSG00000215915|ENST00000378785|ATAD3C;ENST00000474481.1_1_1:1420233-1421362:+|nuORF;ENST00000485748.5_1_1:1420203-1425183:+|nuORF	ENSG00000160072|ENST00000673477|ATAD3B	ENSG00000160072|ENST00000673477|ATAD3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.74493408203125	2	454.745442	907.476331	0.21748	9.8897E-05	-1.5936	-0.00072467	-1.3761	-0.00062577	454.7446096091311	101.75	1.4478	101.58	101.05	102.5	-0.17178					89	33	4	0	0	0	0.83071	1	12647	12647		37.159	0	1	2298900			4862	6778	2860	2875	6497	6497					0.01889211863374385
AVHDSFVAV	9	Unmodified	_AVHDSFVAV_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7451477050781	2	472.745442	943.476331	-0.42823	-0.00020244	0.26307	0.00012437	-0.16516	-7.8077E-05	472.74541446500973	48.817	0.75646	48.884	48.588	49.345	0.066795					51	20	3	0	0	0	0.64155	1	4938	4938		50.025	9.4519	1	3583600			4863	1685	2861	2876	6498	6498					0.00233211863383076
AVHHLVLL	8	Unmodified	_AVHHLVLL_					0	0	0		ENST00000369769.3_1_1:111216478-111216679:-|nuORF	ENST00000369769.3_1_1:111216478-111216679:-|nuORF	ENST00000369769.3_1_1:111216478-111216679:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2494201660156	2	451.284537	900.554522	-1.0438	-0.00047105	-2.9329	-0.0013236	-3.9767	-0.0017946	451.28293580046744	37.534	0.27666	37.314	37.114	37.39	-0.2195					9	6	2	0	0	0	0.027866	1	3005	3005		43.626	16.83	1	91151			4864	12938	2862	2877	6499	6499					0.10026689239259667
AVHHLVLL	8	Unmodified	_AVHHLVLL_					0	0	0		ENST00000369769.3_1_1:111216478-111216679:-|nuORF	ENST00000369769.3_1_1:111216478-111216679:-|nuORF	ENST00000369769.3_1_1:111216478-111216679:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.284537	900.554522	-0.6679	-0.00030141	-4.2156	-0.0019024	-4.8835	-0.0022039	451.282635986864	37.453	0.24036	37.244	37.153	37.393	-0.2092	-0.035279	-0.00024957	NaN	43.626	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64275			4865	12938	2862	2877							0.10026689239259667
AVIGDNTGVF	10	Unmodified	_AVIGDNTGVF_					0	0	0		USH2A|p.T1638A|1|0.34|ENSG00000042781|chr1:216086794-216086794|T/C|missense_variant	USH2A|p.T1638A|1|0.34|ENSG00000042781|chr1:216086794-216086794|T/C|missense_variant	USH2A|p.T1638A|1|0.34|ENSG00000042781|chr1:216086794-216086794|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.75604248046875	2	496.756007	991.497461	-0.4928	-0.0002448	-0.51929	-0.00025796	-1.0121	-0.00050277	496.75556177502483	39.438	0.71373	39.215	38.789	39.503	-0.22311					56	18	4	0	0	0	0.75995	1	3335	3335		63.306	3.188	1	2597900			4866	38133	2863	2878	6500	6500					0.0013717717225745218
AVIKDVQTCHL	11	Unmodified	_AVIKDVQTCHL_					0	0	0			REV__ENST00000492632.5_1_20:9288449-9449247:+|nuORF;REV__ENST00000464199.5_1_20:9351789-9459633:+|nuORF	REV__ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.51971435546875	3	409.556907	1225.64889	0.46673	0.00019115	-3.5348	-0.0014477	-3.0681	-0.0012566	409.5553780469852	24.407	0.75272	24.407	24.166	24.919	0					38	16	3	0	0	0	0.024727	1	1107	1107		17.833	0	1	454300	+		4867	21218;32965	2864	2879	6501	6501					0.045094152084402594
AVILMIAH	8	Unmodified	_AVILMIAH_					0	0	0		ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77197265625	2	434.259674	866.504795	0.058356	2.5342E-05	4.3956	0.0019088	4.454	0.0019342	434.2614971597443	26.587	1.0413	26.587	25.867	26.908	0					30	24	2	0	0	0	0.027866	1	1273	1273		16.705	9.0147	1	87425			4868	10236	2865	2880	6502	6502					0.0662023823895197
AVIPWLGAR	9	Unmodified	_AVIPWLGAR_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7952575683594	2	491.795269	981.575986	0.13012	6.3993E-05	0.85662	0.00042128	0.98674	0.00048528	491.79557204432604	48.3	5.1977	48.113	47.902	53.099	-0.18684					252	137	4	0	0	0	0.78069	1	4891	4891		40.573	1.7665	1	3829000	+		4869	25914	2866	2881	6503	6503					0.08446074267988024
AVITTLPSV	9	Unmodified	_AVITTLPSV_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7723083496094	2	450.773668	899.532783	0.46316	0.00020878	-3.8079	-0.0017165	-3.3448	-0.0015077	450.7719794388524	19.665	1.2182	19.504	19.233	20.451	-0.16079					52	24	4	0	0	0	0.98128	1	468	468		24.203	1.1603	1	2049800			4870	13698	2867	2882	6504	6504					0.07899839700053235
AVIVLAVVLS	10	Unmodified	_AVIVLAVVLS_					0	0	0		GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5;nc|ENSG00000099998|P36269-2|GGT5	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2920837402344	2	492.328611	982.642668	0.93454	0.0004601	-2.4242	-0.0011935	-1.4897	-0.00073342	492.3280609374393	70.599	0.59352	70.599	70.355	70.948	0					27	13	3	0	0	0	0.03519	1	8525	8525		37.159	6.6555	1	346230			4871	2113	2868	2883	6505	6505					0.1506526503923169
AVKILRPDATK	11	Unmodified	_AVKILRPDATK_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5600280761719	3	404.587195	1210.73976	-0.91401	-0.0003698	-1.3631	-0.00055148	-2.2771	-0.00092127	404.5866027789543	33.183	0.11944	33.018	32.918	33.038	-0.16565					4	2	2	0	0	0	0.024727	1	2326	2326		5.4129	0	1	36258			4872	10357	2869	2884	6506	6506					0.14281627248215045
AVKKQIIPI	9	Unmodified	_AVKKQIIPI_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.7978515625	2	505.342052	1008.66955	-0.65263	-0.0003298	1.0663	0.00053885	0.41368	0.00020905	505.34211338094025	80.881	0.63401	80.881	80.707	81.341	0					28	15	2	0	0	0	0.024506	1	10050	10050		38.806	19.446	1	764550	+		4873	36219	2870	2885	6507	6507					0.16556373650416845
AVKQGLKVL	9	Unmodified	_AVKQGLKVL_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3056335449219	2	478.318577	954.622602	0.15986	7.6466E-05	3.0851	0.0014756	3.2449	0.0015521	478.3200928093681	32.385	0.45587	32.385	32.186	32.642	0					12	11	2	0	0	0	0.024294	1	2219	2219		37.159	0	1	79385			4874	4649	2871	2886	6508	6508					0.14347514099279124
AVKRKIQAL	9	Unmodified	_AVKRKIQAL_					0	0	0		ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENSG00000167460|ENST00000643579|TPM4	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.8421020507812	2	513.842751	1025.67095	0.14753	7.5805E-05	-1.4231	-0.00073125	-1.2756	-0.00065544	513.8420387176897	23.581	1.2095	23.379	23.061	24.27	-0.20193					82	27	5	0	0	0	0.35646	4	959	938;947;959;971		68.787	17.888	1	5724800			4875	7689	2872	2887	6509;6510;6511;6512	6511					0.15914007739161207
AVKRKIQAL	9	Unmodified	_AVKRKIQAL_					0	0	0		ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENSG00000167460|ENST00000643579|TPM4	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.8421630859375	2	513.842751	1025.67095	-0.32746	-0.00016827	-0.88149	-0.00045295	-1.209	-0.00062121	513.8423320452422	23.48	1.1029	23.3	23.021	24.124	-0.17989					75	25	5	0	0	0	0.43973	3	922	911;922;933		63.306	19.189	1	7452200			4876	7689	2872	2887	6513;6514;6515	6514					0.15914007739161207
AVKRKIQAL	9	Unmodified	_AVKRKIQAL_					0	0	0		ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENSG00000167460|ENST00000643579|TPM4	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	ENST00000587201.5_1_19:16187360-16198908:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.84228515625	2	513.842751	1025.67095	1.7671	0.00090803	-3.165	-0.0016263	-1.3979	-0.00071831	513.8411597134086	23.493	1.0272	23.302	23.034	24.061	-0.19117					62	23	4	0	0	0	0.35646	3	922	899;911;922		68.787	20.871	1	6987900			4877	7689	2872	2887	6516;6517;6518	6518					0.15914007739161207
AVKTALLDRKP	11	Unmodified	_AVKTALLDRKP_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.58941650390625	3	404.587195	1210.73976	1.3208	0.00053438	3.6125	0.0014616	4.9333	0.001996	404.5885059007311	40.365	1.1641	40.388	40.126	41.29	0.023006					83	32	4	0	0	0	1.0327	1	3482	3482		29.551	0	1	2150400			4878	9362	2873	2888	6519	6519					0.14281627248237783
AVKTALLDRKP	11	Unmodified	_AVKTALLDRKP_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.587195	1210.73976	1.3653	0.00055238	3.3748	0.0013654	4.7401	0.0019178	404.58843821845426	39.974	1.1368	39.974	39.771	40.908	0	-0.12307	-0.0011891	NaN	29.551	87	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2124900			4879	9362	2873	2888							0.14281627248237783
AVKTALLDRKP	11	Unmodified	_AVKTALLDRKP_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	404.587195	1210.73976	0.68016	0.00027518	4.3631	0.0017652	5.0432	0.0020404	404.5888435668164	40.207	1.2296	40.094	39.867	41.097	-0.11222	-0.0024694	1.0383E-05	NaN	29.551	88	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1762200			4880	9362	2873	2888							0.14281627248237783
AVKTALLDRKP	11	Unmodified	_AVKTALLDRKP_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	404.587195	1210.73976	0.017179	6.9502E-06	4.6829	0.0018946	4.7001	0.0019016	404.58895791039026	40.084	0.91465	39.934	39.707	40.621	-0.1497	-0.16269	0.00039855	NaN	29.551	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1114600			4881	9362	2873	2888							0.14281627248237783
AVKTALLDRKP	11	Unmodified	_AVKTALLDRKP_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	404.587195	1210.73976	0.63202	0.00025571	4.1004	0.001659	4.7324	0.0019147	404.5887608757163	40.322	0.87907	40.097	39.891	40.77	-0.225	0.00062877	-0.00030849	NaN	29.551	63	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1282100			4882	9362	2873	2888							0.14281627248237783
AVKTALLDRKP	11	Unmodified	_AVKTALLDRKP_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	404.587195	1210.73976	-1.2914	-0.0005225	6.0438	0.0024453	4.7524	0.0019228	404.5895494470362	40.323	1.1118	40.093	39.891	41.003	-0.23021	-0.003755	0.0020504	NaN	29.551	73	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1007700			4883	9362	2873	2888							0.14281627248237783
AVKVSVPQIE	10	Unmodified	_AVKVSVPQIE_					0	0	0			REV__HSPE1|p.G68A|1|0.08|ENSG00000115541|chr2:197503073-197503073|G/C|missense_variant	REV__HSPE1|p.G68A|1|0.08|ENSG00000115541|chr2:197503073-197503073|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.3436279296875	2	535.316232	1068.61791	-0.84468	-0.00045217	1.9804	0.0010601	1.1357	0.00060797	535.3172339074829	76.479	0.11931	76.251	76.16	76.279	-0.22844					4	2	2	0	0	0	0.03519	1	9384	9384		63.534	20.67	1	49239	+		4884	36137	2874	2889	6520	6520					0.08634585165850694
AVLAAARLSI	10	Unmodified	_AVLAAARLSI_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2876281738281	2	492.813659	983.612765	-0.077825	-3.8353E-05	0.57982	0.00028574	0.502	0.00024739	492.8138056661983	67.02	0.99415	67.02	66.798	67.792	0					46	24	2	0	0	0	0.03519	1	8102	8102		28.081	9.7571	1	1440300			4885	2823	2875	2890	6521	6521					0.12030326093884014
AVLALRVL	8	Unmodified	_AVLALRVL_					0	0	0			REV__ENST00000492037.5_1_17:37785754-37792115:+|nuORF	REV__ENST00000492037.5_1_17:37785754-37792115:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.7947692871094	2	427.794738	853.574923	1.2409	0.00053084	-0.71265	-0.00030487	0.52823	0.00022597	427.79431203991504	63.997	0.72118	63.997	63.701	64.422	0					40	19	3	0	0	0	1.0017	1	7521	7521		37.028	0	1	1155200	+		4886	33734	2876	2891	6522	6522					0.14227859899074247
AVLASVGLGAV	11	Unmodified	_AVLASVGLGAV_					0	0	0		ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.792724609375	2	478.792392	955.570232	0.75335	0.0003607	-0.58148	-0.00027841	0.17187	8.2292E-05	478.7919828003601	50.77	0.59682	50.659	50.416	51.012	-0.11163					38	15	3	0	0	0	0.81602	1	5185	5185		56.721	1.9447	1	2330900			4887	10007	2877	2892	6523	6523					0.09066930965673237
AVLAVHLNT	9	Unmodified	_AVLAVHLNT_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.7332763671875	2	469.276909	936.539266	0.003891	1.826E-06	-0.31539	-0.00014801	-0.3115	-0.00014618	469.27663398198814	33.227	0.47572	33.027	32.771	33.247	-0.20019					15	11	2	0	0	0	0.024523	1	2359	2359		5.9211	2.5111	1	98327			4888	1080	2878	2893	6524	6524					0.06845777651415119
AVLDRGSH	8	Unmodified	_AVLDRGSH_					0	0	0		ENST00000534265.5_2_11:9482574-9494227:+|nuORF;ENST00000532577.5_1_11:9482538-9494227:+|nuORF;ENST00000396604.5_1_11:9482393-9494227:+|nuORF;ENST00000396602.6_1_11:9482569-9494227:+|nuORF;ENST00000533542.5_1_11:9482569-9495563:+|nuORF;ENST00000531943.5_1_11:9481870-9494227:+|nuORF;ENST00000527597.1_1_11:9492659-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.2644348144531	2	427.727584	853.440614	0.0030691	1.3127E-06	2.9713	0.0012709	2.9744	0.0012722	427.7304683864417	53.793	0.28748	53.596	53.422	53.709	-0.19739					11	8	2	0	0	0	0.027866	1	5669	5669		12.207	0.69583	1	62657			4889	16294	2879	2894	6525	6525					0.008031744063828228
AVLGTSWQL	9	Unmodified	_AVLGTSWQL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.77105712890625	2	487.768917	973.523281	-0.38478	-0.00018769	0.63884	0.0003116	0.25405	0.00012392	487.7689030725761	79.786	0.58997	79.786	79.53	80.12	0					25	13	3	0	0	0	0.23085	1	9899	9899		84.916	28.194	1	451690			4890	16521	2880	2895	6526	6526					0.03546071414530161
AVLGTSWQL	9	Unmodified	_AVLGTSWQL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.768917	973.523281	-1.1471	-0.00055953	1.3737	0.00067006	0.22661	0.00011053	487.76942021966363	79.938	0.67104	79.766	79.525	80.197	-0.17226	0.07607	0.00076428	NaN	84.916	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414290			4891	16521	2880	2895							0.03546071414530161
AVLGTSWQL	9	Unmodified	_AVLGTSWQL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.768917	973.523281	0.34502	0.00016829	0.22912	0.00011176	0.57414	0.00028005	487.7687720637419	79.838	0.62848	79.592	79.236	79.865	-0.2465	-0.098165	-0.00035232	NaN	84.916	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165930			4892	16521	2880	2895							0.03546071414530161
AVLGTSWQL	9	Unmodified	_AVLGTSWQL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.768917	973.523281	0.28941	0.00014116	0.54692	0.00026677	0.83632	0.00040793	487.7688942523866	79.857	0.58429	79.638	79.202	79.786	-0.21922	-0.052636	-4.2301E-05	NaN	84.916	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121220			4893	16521	2880	2895							0.03546071414530161
AVLGTSWQL	9	Unmodified	_AVLGTSWQL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.768917	973.523281	0.36903	0.00018	-0.53073	-0.00025888	-0.1617	-7.8873E-05	487.76864201402583	79.745	0.58564	79.595	79.195	79.78	-0.15051	-0.095438	-0.0010936	NaN	84.916	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140270			4894	16521	2880	2895							0.03546071414530161
AVLIQDEND	9	Unmodified	_AVLIQDEND_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.8133850097656	2	508.748379	1015.4822	-0.3422	-0.0001741	-1.3448	-0.00068415	-1.687	-0.00085825	508.74744194526403	93.073	0.50534	93.073	92.881	93.387	0					15	11	2	0	0	0	0.024457	1	11853	11853		37.159	9.2769	1	85710			4895	624	2881	2896	6527	6527					-0.024917344156278887
AVLKKGRWLE	10	Unmodified	_AVLKKGRWLE_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.5801696777344	3	400.580152	1198.71863	2.8086	0.0011251	-2.1086	-0.00084468	0.69997	0.00028039	400.57916869648335	114.65	0.13065	114.66	114.59	114.72	0.0087204					8	5	2	0	0	0	1.1295	1	14121	14121		26.063	3.5018	1	345950	+		4896	21001	2882	2897	6528	6528					0.1272166193934936
AVLKKGRWLE	10	Unmodified	_AVLKKGRWLE_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.57965087890625	3	400.580152	1198.71863	0.70334	0.00028175	0.19606	7.8539E-05	0.89941	0.00036028	400.5801374909674	110.7	0.47864	110.58	110.51	110.99	-0.12525					42	17	3	0	0	0	1.1151	1	13594	13594		18.531	3.1979	1	1160800	+		4897	21001	2882	2897	6529	6529					0.1272166193934936
AVLLKRLD	8	Unmodified	_AVLLKRLD_					0	0	0		ENST00000377298.8_1_1:9789653-9789887:-|nuORF	ENST00000377298.8_1_1:9789653-9789887:-|nuORF	ENST00000377298.8_1_1:9789653-9789887:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7689514160156	2	464.302927	926.591301	1.5164	0.00070407	-1.4496	-0.00067305	0.06681	3.102E-05	464.30211297984255	62.986	0.68691	63.04	62.76	63.447	0.054104					36	17	3	0	0	0	0.027866	1	7317	7317		37.028	11.578	1	862320			4898	13200	2883	2898	6530	6530					0.125069410651804
AVLLPEEP	8	Unmodified	_AVLLPEEP_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.2745361328125	2	434.244744	866.474934	-0.37163	-0.00016138	1.5542	0.00067489	1.1825	0.00051351	434.2461592051386	47.726	0.12295	47.785	47.708	47.831	0.059097					5	3	2	0	0	0	0.027866	1	4746	4746		37.028	3.5129	1	82781			4899	9269	2884	2899	6531	6531					0.03635577774628018
AVLLSPAIV	9	Unmodified	_AVLLSPAIV_					0	0	0			REV__ENST00000556883.1_1_14:93650993-93651212:-|nuORF	REV__ENST00000556883.1_1_14:93650993-93651212:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	2	441.786579	881.558604	-0.38487	-0.00017003	3.5904	0.0015862	3.2055	0.0014162	441.7880479717175	42.934	0.83905	42.696	42	42.839	-0.23736					61	21	6	0	0	0	0.96855	1	3903	3903		26.796	2.5934	1	6899500	+		4900	35050	2885	2900	6532	6532					0.11308733942314575
AVLNKLPIL	9	Unmodified	_AVLNKLPIL_					0	0	0			REV__ENSG00000172766|ENST00000379406|NAA16	REV__ENSG00000172766|ENST00000379406|NAA16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.8288269042969	2	490.828778	979.643003	-0.48882	-0.00023993	1.4526	0.00071298	0.96378	0.00047305	490.82929918316074	66.446	0.63781	66.476	66.267	66.905	0.030106					31	18	2	0	0	0	0.97516	1	7825	7825		25.45	1.2474	1	1773900	+		4901	26707	2886	2901	6533	6533					0.15236684759088348
AVLRGASSLAL	11	Unmodified	_AVLRGASSLAL_					0	0	0		nc|ENSG00000156113|Q12791-6|KCNMA1	nc|ENSG00000156113|Q12791-6|KCNMA1	nc|ENSG00000156113|Q12791-6|KCNMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.282470703125	2	529.321848	1056.62914	-1.1571	-0.00061246	1.3958	0.00073884	0.23874	0.00012637	529.3219671962188	39.933	0.47728	39.821	39.5	39.978	-0.11223					30	12	4	0	0	0	0.02479	1	3458	3458		60.118	0	1	321050			4902	18402	2887	2902	6534	6534					0.10309407260001535
AVLRLSSVS	9	Unmodified	_AVLRLSSVS_					0	0	0		ENST00000517870.1_1_1:53099041-53108627:+|nuORF	ENST00000517870.1_1_1:53099041-53108627:+|nuORF	ENST00000517870.1_1_1:53099041-53108627:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.2837219238281	2	466.282192	930.549831	0.95713	0.00044629	3.5313	0.0016466	4.4884	0.0020929	466.2837428172178	102.34	0.61717	102.33	102.02	102.63	-0.0054398					32	13	3	0	0	0	0.31247	1	13021	13021		73.975	2.5968	1	298960			4903	15919	2888	2903	6535	6535					0.08177760305864012
AVLSKPFAVSA	11	Unmodified	_AVLSKPFAVSA_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9|MGA	REV__nc|ENSG00000174197|Q8IWI9|MGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3162231445312	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.98542	1	10527	10527		40.058	4.9061	1	4936700	+		4904	26841	2889	2904	6536	6536					0.08222889028479585
AVLSLFQSI	9	Unmodified	_AVLSLFQSI_					0	0	0		ENST00000571885.1_1_17:79662737-79663393:+|nuORF;nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	ENST00000571885.1_1_17:79662737-79663393:+|nuORF	ENST00000571885.1_1_17:79662737-79663393:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.28668212890625	2	489.286943	976.559333	-0.41239	-0.00020178	0.56832	0.00027807	0.15593	7.6295E-05	489.2871807904922	92.511	0.87736	92.511	92.216	93.093	0					41	20	3	0	0	0	0.03666	1	11742	11742		136.27	22.857	1	490590			4905	9432	2890	2905	6537	6537					0.07011528591374372
AVLSLFQSI	9	Unmodified	_AVLSLFQSI_					0	0	0		ENST00000571885.1_1_17:79662737-79663393:+|nuORF;nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	ENST00000571885.1_1_17:79662737-79663393:+|nuORF	ENST00000571885.1_1_17:79662737-79663393:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2865905761719	2	489.286943	976.559333	-0.42195	-0.00020645	0.62569	0.00030614	0.20375	9.9692E-05	489.2871858489162	92.47	0.77016	92.461	92.045	92.815	-0.0082932					38	18	3	0	0	0	0.020687	1	11707	11707		148.99	30.244	1	457330			4906	9432	2890	2905	6538	6538					0.07011528591374372
AVLSLFQSI	9	Unmodified	_AVLSLFQSI_					0	0	0		ENST00000571885.1_1_17:79662737-79663393:+|nuORF;nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	ENST00000571885.1_1_17:79662737-79663393:+|nuORF	ENST00000571885.1_1_17:79662737-79663393:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2868347167969	2	489.286943	976.559333	-0.17564	-8.5939E-05	0.51515	0.00025206	0.33951	0.00016612	489.2871668499537	92.489	0.74926	92.499	92.265	93.015	0.009407					41	17	4	0	0	0	0.062622	1	11671	11671		124.08	19.334	1	422500			4907	9432	2890	2905	6539	6539					0.07011528591374372
AVLVEPKL	8	Unmodified	_AVLVEPKL_					0	0	0		ENSG00000159961|ENST00000641141|OR3A3;nc|ENSG00000159961|P47888|OR3A3;ENSG00000221882|ENST00000573901|OR3A2;nc|ENSG00000221882|P47893|OR3A2;ENSG00000180090|ENST00000323404|OR3A1	ENSG00000159961|ENST00000641141|OR3A3;ENSG00000180090|ENST00000323404|OR3A1	ENSG00000159961|ENST00000641141|OR3A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7800598144531	2	434.778754	867.542954	-0.095049	-4.1325E-05	3.2879	0.0014295	3.1928	0.0013882	434.78010469367223	36.167	2.0758	36.205	35.569	37.645	0.038044					161	55	3	0	0	0	0.97924	1	2801	2801		40.573	0	1	9580100			4908	6776;8959	2891	2906	6540	6540					0.10388447425293634
AVLVEPKL	8	Unmodified	_AVLVEPKL_					0	0	0		ENSG00000159961|ENST00000641141|OR3A3;nc|ENSG00000159961|P47888|OR3A3;ENSG00000221882|ENST00000573901|OR3A2;nc|ENSG00000221882|P47893|OR3A2;ENSG00000180090|ENST00000323404|OR3A1	ENSG00000159961|ENST00000641141|OR3A3;ENSG00000180090|ENST00000323404|OR3A1	ENSG00000159961|ENST00000641141|OR3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.77996826171875	2	434.778754	867.542954	-0.80807	-0.00035133	4.0744	0.0017715	3.2664	0.0014202	434.7803826773186	38.404	0.63618	38.224	37.939	38.576	-0.17929					62	17	4	0	0	0	1.0574	1	3158	3158		27.882	0	1	3943600			4909	6776;8959	2891	2906	6541	6541					0.10388447425293634
AVLVEPKL	8	Unmodified	_AVLVEPKL_					0	0	0		ENSG00000159961|ENST00000641141|OR3A3;nc|ENSG00000159961|P47888|OR3A3;ENSG00000221882|ENST00000573901|OR3A2;nc|ENSG00000221882|P47893|OR3A2;ENSG00000180090|ENST00000323404|OR3A1	ENSG00000159961|ENST00000641141|OR3A3;ENSG00000180090|ENST00000323404|OR3A1	ENSG00000159961|ENST00000641141|OR3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.78009033203125	2	434.778754	867.542954	-0.096708	-4.2046E-05	3.3703	0.0014653	3.2736	0.0014233	434.78008853825247	40.597	2.0449	40.372	39.62	41.665	-0.225					180	53	4	0	0	0	1.0133	1	3552	3552		35.201	0	1	6024800			4910	6776;8959	2891	2906	6542	6542					0.10388447425293634
AVLVIRTK	8	Unmodified	_AVLVIRTK_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2818908691406	2	450.30547	898.596387	-0.66707	-0.00030038	4.0019	0.0018021	3.3349	0.0015017	450.30716934855997	50.822	0.29771	50.903	50.849	51.147	0.08099					14	7	3	0	0	0	0.027866	1	5321	5321		8.8223	0.59103	1	508880	+		4911	19877	2892	2907	6543	6543					0.1430324492781665
AVLVKGLL	8	Unmodified	_AVLVKGLL_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	REV__nc|ENSG00000117868|A0FGR8-5|ESYT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.887939453125	2	406.783839	811.553125	0.25555	0.00010395	3.5813	0.0014568	3.8368	0.0015608	406.78522633438706	33.761	0.69347	33.56	33.209	33.902	-0.20019					22	17	2	0	0	0	0.027866	1	2412	2412		4.6817	0	1	61006	+		4912	22377	2893	2908	6544	6544					0.1398105515053203
AVLVKLEP	8	Unmodified	_AVLVKLEP_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.78009033203125	2	434.778754	867.542954	-0.025772	-1.1205E-05	3.413	0.0014839	3.3872	0.0014727	434.78012510207304	40.646	1.8414	40.669	40.013	41.854	0.023006					178	51	4	0	0	0	0.97924	1	3493	3493		40.573	1.7665	1	8357300	+		4913	28616	2894	2909	6545	6545					0.10388447425282266
AVLVKLEP	8	Unmodified	_AVLVKLEP_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7799987792969	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	0.93274	2	2777	2777;2813		47.916	1.9636	1	8541000	+		4914	28616	2894	2909	6546;6547	6546					0.10388447425282266
AVLVKLEP	8	Unmodified	_AVLVKLEP_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.780029296875	2	434.778754	867.542954	-0.43363	-0.00018853	3.7697	0.001639	3.3361	0.0014505	434.7802551861221	40.423	1.9513	40.273	39.513	41.464	-0.1497					168	51	4	0	0	0	0.91239	1	3502	3502		50.025	2.1089	1	6063000	+		4915	28616	2894	2909	6548	6548					0.10388447425282266
AVLVKLEP	8	Unmodified	_AVLVKLEP_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.780029296875	2	434.778754	867.542954	0.30511	0.00013265	2.618	0.0011382	2.9231	0.0012709	434.7797610540028	48.309	1.399	48.122	47.596	48.995	-0.18684					119	37	4	0	0	0	0.99042	1	4859	4859		38.806	5.2906	1	3718000	+		4916	28616	2894	2909	6549	6549					0.10388447425282266
AVLVKPIE	8	Unmodified	_AVLVKPIE_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7801208496094	2	434.778754	867.542954	-1.1223	-0.00048795	4.3443	0.0018888	3.222	0.0014009	434.7805290584824	38.451	0.9456	38.478	38.264	39.21	0.027275					92	25	5	0	0	0	0.99042	1	3210	3210		38.806	1.647	1	6751900	+		4917	27526	2895	2910	6550	6550					0.10388447425282266
AVLVKPIE	8	Unmodified	_AVLVKPIE_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.78009033203125	2	434.778754	867.542954	-0.80807	-0.00035133	4.0744	0.0017715	3.2664	0.0014202	434.7803826773186	38.404	0.63618	38.224	37.939	38.576	-0.17929					62	17	4	0	0	0	1.0106	1	3170	3170		35.618	12.582	1	3943600	+		4918	27526	2895	2910	6551	6551					0.10388447425282266
AVLVKPIE	8	Unmodified	_AVLVKPIE_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7801513671875	2	434.778754	867.542954	-0.43363	-0.00018853	3.7697	0.001639	3.3361	0.0014505	434.7802551861221	40.423	1.9513	40.273	39.513	41.464	-0.1497					168	51	4	0	0	0	0.93274	1	3478	3478		47.916	7.343	1	6063000	+		4919	27526	2895	2910	6552	6552					0.10388447425282266
AVLVKPIE	8	Unmodified	_AVLVKPIE_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.78009033203125	2	434.778754	867.542954	-0.63914	-0.00027789	3.8333	0.0016666	3.1942	0.0013888	434.7802686350116	38.389	0.72919	38.168	37.959	38.688	-0.22149					66	19	4	0	0	0	0.96769	3	3167	3167;3178;3189		42.396	18.193	1	4491300	+		4920	27526	2895	2910	6553;6554;6555	6553					0.10388447425282266
AVLVKPIE	8	Unmodified	_AVLVKPIE_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2	REV__nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801513671875	2	434.778754	867.542954	-0.096708	-4.2046E-05	3.3703	0.0014653	3.2736	0.0014233	434.78008853825247	40.597	2.0449	40.372	39.62	41.665	-0.225					180	53	4	0	0	0	0.93274	1	3489	3489		47.916	5.4411	1	6024800	+		4921	27526	2895	2910	6556	6556					0.10388447425282266
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7799377441406	2	434.778754	867.542954	-0.80807	-0.00035133	4.0744	0.0017715	3.2664	0.0014202	434.7803826773186	38.404	0.63618	38.224	37.939	38.576	-0.17929					62	17	4	0	0	0	0.90698	1	3182	3182		31.955	6.5047	1	3943600			4922	713	2896	2911	6557	6557					0.10388447425305003
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7801208496094	2	434.778754	867.542954	-0.014697	-6.39E-06	3.2031	0.0013926	3.1884	0.0013862	434.7800279350698	42.165	1.6534	42.042	41.111	42.765	-0.12299					112	43	3	0	0	0	0.88411	1	3775	3775		33.516	8.0654	1	2497500			4923	713	2896	2911	6558	6558					0.10388447425305003
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7798156738281	2	434.778754	867.542954	-0.30055	-0.00013067	3.4762	0.0015114	3.1757	0.0013807	434.7801213004645	42.409	1.3768	42.177	41.546	42.923	-0.23186					122	36	4	0	0	0	0.88411	1	3781	3781		33.516	1.5607	1	3210900			4924	713	2896	2911	6559	6559					0.10388447425305003
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801513671875	2	434.778754	867.542954	0.14807	6.4377E-05	2.8093	0.0012214	2.9574	0.0012858	434.77981426491095	46.923	1.4792	46.654	46.379	47.858	-0.26939					156	40	5	0	0	0	0.75282	1	4543	4543		42.474	0	1	5703000			4925	713	2896	2911	6560	6560					0.10388447425305003
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7800598144531	2	434.778754	867.542954	0.33045	0.00014367	3.1241	0.0013583	3.4545	0.001502	434.7799891865414	39.132	1.2195	38.907	38.636	39.856	-0.2257					99	32	4	0	0	0	0.75282	1	3304	3304		42.474	1.9018	1	4063300			4926	713	2896	2911	6561	6561					0.10388447425305003
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7799987792969	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	0.85941	1	3513	3513		35.201	0	1	6443300			4927	713	2896	2911	6562	6562					0.10388447425305003
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	2	434.778754	867.542954	0.1037	4.5087E-05	2.9814	0.0012963	3.0851	0.0013413	434.7799173070872	42.423	1.5544	42.193	41.354	42.908	-0.23029					129	41	4	0	0	0	0.88411	1	3775	3775		33.516	6.7195	1	3875500			4928	713	2896	2911	6563	6563					0.10388447425305003
AVLVSLLGP	9	Unmodified	_AVLVSLLGP_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	434.778754	867.542954	0.072718	3.1616E-05	2.8406	0.001235	2.9133	0.0012666	434.77984164352523	46.699	1.5772	46.505	46.165	47.742	-0.19387					162	43	6	0	0	0	0.64155	1	4510	4510		50.025	2.1089	1	7314300			4929	713	2896	2911	6564	6564					0.10388447425305003
AVLYVSPSPI	10	Unmodified	_AVLYVSPSPI_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3012084960938	2	523.30005	1044.58555	4.6828	0.0024505	-3.9765	-0.0020809	0.70629	0.0003696	523.2977387483768	17.936	0.35479	17.997	17.864	18.219	0.06036					13	7	3	0	0	0	1.1147	1	194	194		18.324	0.95945	1	26757	+		4930	27262	2897	2912	6565	6565					0.06503797762843533
AVMSRNSL	8	Unmodified	_AVMSRNSL_					0	0	0		ENSG00000167371|ENST00000358758|PRRT2;nc|ENSG00000167371|Q7Z6L0-2|PRRT2	ENSG00000167371|ENST00000358758|PRRT2	ENSG00000167371|ENST00000358758|PRRT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.24835205078125	2	439.231645	876.448736	-0.2298	-0.00010094	1.2058	0.00052963	0.97601	0.0004287	439.23177074399194	33.611	0.41695	33.618	33.423	33.84	0.0066223					18	10	2	0	0	0	0.027866	1	2403	2403		17.365	0	1	215020			4931	7678	2898	2913	6566	6566					0.005569853315023465
AVNEVLLSP	9	Unmodified	_AVNEVLLSP_					0	0	0			REV__nc|ENSG00000165409|P16473-3|TSHR	REV__nc|ENSG00000165409|P16473-3|TSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.3027648925781	2	471.26875	940.522947	-0.16751	-7.8944E-05	0.49984	0.00023556	0.33232	0.00015661	471.2688256665881	67.228	1.029	67.004	66.778	67.807	-0.22374					54	24	4	0	0	0	0.024427	1	7791	7791		34.173	0	1	1463400	+		4932	36872	2899	2914	6567	6567					0.0503065169467618
AVNGQGLIVA	10	Unmodified	_AVNGQGLIVA_					0	0	0			REV__nc|ENSG00000161513|P22570-4|FDXR	REV__nc|ENSG00000161513|P22570-4|FDXR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2742004394531	2	471.274367	940.53418	0.37885	0.00017854	-0.56963	-0.00026845	-0.19079	-8.9913E-05	471.27400956075775	42.243	1.0032	42.269	41.857	42.861	0.026012					70	28	4	0	0	0	1.0781	1	3827	3827		35.618	2.8059	1	7592500	+		4933	25385	2900	2915	6568	6568					0.06153473788822339
AVNKGRDADQ	10	Unmodified	_AVNKGRDADQ_					0	0	0			REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.278564453125	2	537.270344	1072.52613	0.1514	8.1344E-05	3.4102	0.0018322	3.5616	0.0019135	537.2719413709458	25.203	0.55363	25.031	24.688	25.241	-0.17151					28	12	3	0	0	0	0.03519	1	1105	1105		30.318	0	1	354850	+		4934	27082	2901	2916	6569	6569					-0.00722705198654694
AVNLSVKH	8	Unmodified	_AVNLSVKH_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.77978515625	2	434.255977	866.497401	-0.13885	-6.0298E-05	1.1643	0.0005056	1.0254	0.00044531	434.2561657338469	36.281	0.54866	36.319	36.065	36.613	0.038044					26	15	2	0	0	0	0.027866	1	2777	2777		50.025	9.4519	1	601950			4935	4358	2902	2917	6570	6570					0.05881221962908967
AVNPLLRVI	9	Unmodified	_AVNPLLRVI_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.8238525390625	2	497.824027	993.633501	-0.39469	-0.00019649	0.047775	2.3783E-05	-0.34691	-0.0001727	497.82397514456943	70.173	0.66228	69.906	69.536	70.198	-0.26725					48	15	4	0	0	0	0.072054	2	8157	8146;8157		120.62	35.262	1	2333400			4936	2196	2903	2918	6571;6572	6572					0.13642916473577316
AVNPLLRVI	9	Unmodified	_AVNPLLRVI_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.8240051269531	2	497.824027	993.633501	-0.011482	-5.7158E-06	-0.24159	-0.00012027	-0.25308	-0.00012599	497.8237842294684	70.045	0.74042	69.795	69.441	70.182	-0.25063					54	17	4	0	0	0	0.13494	2	8140	8140;8151		102.77	30.588	1	2184800			4937	2196	2903	2918	6573;6574	6573					0.13642916473577316
AVNPLLRVI	9	Unmodified	_AVNPLLRVI_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.8238830566406	2	497.824027	993.633501	-0.10606	-5.2799E-05	-0.32466	-0.00016162	-0.43072	-0.00021442	497.82375475959583	70.015	0.73703	69.793	69.39	70.127	-0.22245					54	17	4	0	0	0	0.13494	2	8124	8124;8134		102.77	36.97	1	2233500			4938	2196	2903	2918	6575;6576	6575					0.13642916473577316
AVNRARRPLAR	11	Unmodified	_AVNRARRPLAR_					0	0	0		ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2;ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000008853|ENST00000251822|RHOBTB2;ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2646179199219	3	427.26545	1278.77452	-0.029898	-1.2774E-05	-2.351	-0.0010045	-2.3809	-0.0010173	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0532	1	5967	5967		24.232	1.6702	1	50736000			4939	1481;853	2904	2919	6577	6577					0.14628307899556603
AVNRARRPLAR	11	Unmodified	_AVNRARRPLAR_					0	0	0		ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2;ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000008853|ENST00000251822|RHOBTB2;ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2648010253906	3	427.26545	1278.77452	0.50024	0.00021373	-2.9116	-0.001244	-2.4113	-0.0010303	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.0563	2	5868	5868;5892		23.378	0.81632	1	61030000			4940	1481;853	2904	2919	6578;6579	6578					0.14628307899556603
AVPAAAPGR	9	Unmodified	_AVPAAAPGR_					0	0	0		ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.2353820800781	2	405.235045	808.455536	0.69905	0.00028328	-0.16972	-6.8777E-05	0.52933	0.0002145	405.2348121933706	23.718	0.90039	23.718	23.441	24.341	0					44	20	3	0	0	0	0.40179	1	967	967		65.803	2.8247	1	693980			4941	12107	2905	2920	6580	6580					0.04364666274364026
AVPAAAPGR	9	Unmodified	_AVPAAAPGR_					0	0	0		ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	405.235045	808.455536	0.59005	0.00023911	0.339	0.00013737	0.92905	0.00037648	405.2350339043429	24.217	0.55281	24.042	23.699	24.252	-0.17484	0.17004	0.00017524	NaN	65.803	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63115			4942	12107	2905	2920							0.04364666274364026
AVPAAAPGR	9	Unmodified	_AVPAAAPGR_					0	0	0		ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	405.235045	808.455536	1.8376	0.00074466	-0.95383	-0.00038653	0.88377	0.00035813	405.2345978910455	24.239	0.57018	24.058	23.715	24.285	-0.18089	0.18681	-0.00087256	NaN	65.803	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67685			4943	12107	2905	2920							0.04364666274364026
AVPAHWLCP	9	Unmodified	_AVPAHWLCP_					0	0	0		ENST00000565493.1_1_20:34638642-34638789:-|nuORF	ENST00000565493.1_1_20:34638642-34638789:-|nuORF	ENST00000565493.1_1_20:34638642-34638789:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2357482910156	2	497.25238	992.490207	-0.29109	-0.00014474	-2.29	-0.0011387	-2.5811	-0.0012834	497.2530884023265	30.812	0.46676	30.66	30.298	30.765	-0.15231					13	10	2	0	0	0	0.024475	1	1983	1983		39.021	24.884	1	54760			4944	16922	2906	2921	6581	6581					-0.006338339091826128
AVPCIAYSSY	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AVPCIAYSSY_					1	0	0		chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|97	chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|97	chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|97	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2593994140625	2	558.257525	1114.5005	0.2176	0.00012148	2.8064	0.0015667	3.024	0.0016882	558.2591032240977	79.482	1.4597	79.263	78.994	80.454	-0.21923					96	34	5	0	0	0	0.57393	1	9508	9508		79.939	8.5613	1	8248200			4945	407	2907	2922	6582	6582					-0.05217315765253261
AVPEKKVPE	9	Unmodified	_AVPEKKVPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7716064453125	2	498.78985	995.565146	-0.62859	-0.00031353	-4.199	-0.0020944	-4.8276	-0.002408	498.7876650312301	28.443	0.4208	28.274	28.089	28.51	-0.16897					11	9	2	0	0	0	0.024541	1	1659	1659		16.473	4.9621	1	75851			4946	6479	2908	2923	6583	6583					0.06718627103043673
AVPLPTPQL	9	Unmodified	_AVPLPTPQL_					0	0	0			REV__nc|ENSG00000179168|Q86UU5-2|GGN	REV__nc|ENSG00000179168|Q86UU5-2|GGN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.27984619140625	2	468.28166	934.548768	0.16546	7.7482E-05	-3.3559	-0.0015715	-3.1904	-0.001494	468.27998233933977	93.863	1.75	93.863	93.429	95.179	0					68	41	3	0	0	0	0.074956	1	11934	11934		119.56	25.55	1	1606500	+		4947	27245	2909	2924	6584	6584					0.07887545936932838
AVPNLHKV	8	Unmodified	_AVPNLHKV_					0	0	0		ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2662658691406	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	0.97924	1	4103	4103		40.573	3.5441	1	3361200			4948	6978	2910	2925	6585	6585					0.07493812342568162
AVPNLHKV	8	Unmodified	_AVPNLHKV_					0	0	0		ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2664794921875	2	439.266345	876.518136	-0.47805	-0.00020999	0.71342	0.00031338	0.23537	0.00010339	439.26654545883497	43.416	2.7354	43.277	42.521	45.256	-0.13929					191	77	3	0	0	0	0.96719	2	4019	4019;4040		42.474	1.9018	1	3268000			4949	6978	2910	2925	6586;6587	6586					0.07493812342568162
AVPNLHKV	8	Unmodified	_AVPNLHKV_					0	0	0		ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2664794921875	2	439.266345	876.518136	0.40112	0.0001762	-0.15652	-6.8755E-05	0.2446	0.00010744	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	0.97924	1	3998	3998		40.573	7.057	1	3207400			4950	6978	2910	2925	6588	6588					0.07493812342568162
AVPSVHVPEV	10	Unmodified	_AVPSVHVPEV_					0	0	0		ENSG00000172061|ENST00000347624|LRRC15;nc|ENSG00000172061|Q8TF66-2|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.8272705078125	2	517.287474	1032.5604	-0.41503	-0.00021469	3.4132	0.0017656	2.9981	0.0015509	517.289101903414	35.192	0.89786	35.005	34.479	35.377	-0.18675					35	22	2	0	0	0	0.03519	1	2617	2617		49.442	23.991	1	379670			4951	8238	2911	2926	6589	6589					0.04541742960282136
AVQAARRRPRE	11	Unmodified	_AVQAARRRPRE_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2569580078125	3	437.256843	1308.7487	0.65097	0.00028464	0.58303	0.00025493	1.234	0.00053957	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	1.0592	1	12399	12399		22.562	0.78116	1	1147200	+		4952	22175	2912	2927	6590	6590					0.10667413657256475
AVQKKLRS	8	Unmodified	_AVQKKLRS_					0	0	0		nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF	nc|ENSG00000164574|Q86SR1-2|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.28668212890625	2	465.298176	928.581799	-0.30431	-0.00014159	1.1648	0.00054198	0.8605	0.00040039	465.29879675144076	75.65	0.17392	75.405	75.303	75.477	-0.24455					8	4	3	0	0	0	0.027866	1	9243	9243		31.955	0	1	288930			4953	7292	2913	2928	6591	6591					0.11465172779651311
AVQLPLPPPSA	11	Unmodified	_AVQLPLPPPSA_					0	0	0		ENST00000270792.9_1_1:26606524-26606650:+|nuORF	ENST00000270792.9_1_1:26606524-26606650:+|nuORF	ENST00000270792.9_1_1:26606524-26606650:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	545.318774	1088.623	-1.8246	-0.00099497	-2.3302	-0.0012707	-4.1548	-0.0022657	545.3173861251879	92.083	1.5585	91.939	91.617	93.175	-0.14356					78	36	4	0	0	0	1.0344	1	11279	11279		29.17	1.0886	1	1597200			4954	11644	2914	2929	6592	6592					0.08222889028479585
AVRALPSH	8	Unmodified	_AVRALPSH_					0	0	0		ENST00000536344.5_1_11:6479060-6495064:-|nuORF	ENST00000536344.5_1_11:6479060-6495064:-|nuORF	ENST00000536344.5_1_11:6479060-6495064:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.7750549316406	2	425.748319	849.482085	-0.37069	-0.00015782	2.6926	0.0011464	2.3219	0.00098855	425.74963353725497	43.258	0.21607	43.119	42.921	43.137	-0.13929					8	5	2	0	0	0	0.027866	1	4022	4022		18.324	0	1	105230			4955	16360	2915	2930	6593	6593					0.051323551656992095
AVRAPPAVP	9	Unmodified	_AVRAPPAVP_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2664794921875	2	439.266345	876.518136	-0.47805	-0.00020999	0.71342	0.00031338	0.23537	0.00010339	439.26654545883497	43.416	2.7354	43.277	42.521	45.256	-0.13929					191	77	3	0	0	0	0.4855	1	4053	4053		60.294	7.9948	1	3268000	+		4956	22918	2916	2931	6594	6594					0.07493812342556794
AVRAPPAVP	9	Unmodified	_AVRAPPAVP_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2668151855469	2	439.266345	876.518136	0.40112	0.0001762	-0.15652	-6.8755E-05	0.2446	0.00010744	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	0.96855	1	3962	3962		26.796	2.5934	1	3207400	+		4957	22918	2916	2931	6595	6595					0.07493812342556794
AVRAPPAVP	9	Unmodified	_AVRAPPAVP_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	439.266345	876.518136	-0.38959	-0.00017113	3.1781	0.001396	2.7885	0.0012249	439.2661508032866	43.37	1.2603	43.144	42.597	43.858	-0.22597	-0.12887	0.0024206	NaN	60.294	48	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113970	+		4958	22918	2916	2931							0.07493812342556794
AVRDLDNLYY	10	Unmodified	_AVRDLDNLYY_					0	0	0			REV__ENSG00000156052|ENST00000286548|GNAQ	REV__ENSG00000156052|ENST00000286548|GNAQ	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3140869140625	2	621.311677	1240.6088	-1.4993	-0.00093152	4.4058	0.0027374	2.9065	0.0018058	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.50517	1	7637	7637		87.696	2.7809	1	29556000	+		4959	25049	2917	2932	6596	6596					-0.0018780819048060948
AVREILALI	9	Unmodified	_AVREILALI_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.S753Rfs*9|1|0.16|ENSG00000135241|chr7:108472487-108472491|CTTGA/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8;ENST00000483879.5_1_7:108137026-108166538:-|nuORF	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.2740173339844	2	499.32386	996.633166	-0.28117	-0.00014039	-0.14199	-7.0901E-05	-0.42316	-0.00021129	499.32358420703065	73.214	1.106	72.937	72.539	73.645	-0.2769					39	26	3	0	0	0	0.024541	1	8585	8585		16.473	0	1	196230			4960	4870	2918	2933	6597	6597					0.1347149675369792
AVRGALRAS	9	Unmodified	_AVRGALRAS_					0	0	0		ENSG00000121104|ENST00000240364|FAM117A	ENSG00000121104|ENST00000240364|FAM117A	ENSG00000121104|ENST00000240364|FAM117A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.772216796875	2	450.772326	899.530098	0.46316	0.00020878	-0.82932	-0.00037383	-0.36616	-0.00016506	450.7719794388524	19.665	1.2182	19.504	19.233	20.451	-0.16079					52	24	4	0	0	0	0.70186	1	454	454		45.952	3.4775	1	2049800			4961	3856	2919	2934	6598	6598					0.07631429085756736
AVRGGDKKL	9	Unmodified	_AVRGGDKKL_					0	0	0		ENSG00000138430|ENST00000284719|OLA1;nc|ENSG00000138430|Q9NTK5-2|OLA1;nc|ENSG00000138430|Q9NTK5-3|OLA1;TMEM131-OLA1|1|fusion;ENST00000396387.2_1_22:42504319-42504484:-|nuORF	ENSG00000138430|ENST00000284719|OLA1	ENSG00000138430|ENST00000284719|OLA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.28692626953125	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	0.77768	1	11954	11954		40.778	1.972	1	51888000			4962	5242	2920	2935	6599	6599					0.08748582399982752
AVRGGDKKL	9	Unmodified	_AVRGGDKKL_					0	0	0		ENSG00000138430|ENST00000284719|OLA1;nc|ENSG00000138430|Q9NTK5-2|OLA1;nc|ENSG00000138430|Q9NTK5-3|OLA1;TMEM131-OLA1|1|fusion;ENST00000396387.2_1_22:42504319-42504484:-|nuORF	ENSG00000138430|ENST00000284719|OLA1	ENSG00000138430|ENST00000284719|OLA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.28839111328125	2	472.287808	942.561064	0.20114	9.4994E-05	-0.67758	-0.00032001	-0.47644	-0.00022502	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	0.67687	1	11911	11911		47.657	1.7054	1	52660000			4963	5242	2920	2935	6600	6600					0.08748582399982752
AVRLLRKHH	9	Unmodified	_AVRLLRKHH_					0	0	0		ENST00000302538.9_1_17:908292-908400:-|nuORF	ENST00000302538.9_1_17:908292-908400:-|nuORF	ENST00000302538.9_1_17:908292-908400:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.83203125	2	565.356891	1128.69923	1.0933	0.0006181	-2.3693	-0.0013395	-1.276	-0.00072142	565.3554804536701	17.821	0.34943	17.667	17.458	17.807	-0.15403					10	6	2	0	0	0	0.024523	1	218	218		29.15	2.3535	1	42562			4964	11959	2921	2936	6601	6601					0.14002750439112788
AVRPDAPLP	9	Unmodified	_AVRPDAPLP_					0	0	0			REV__ENSG00000102302|ENST00000375135|FGD1	REV__ENSG00000102302|ENST00000375135|FGD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2693176269531	2	468.269084	934.523616	-0.28939	-0.00013551	0.32376	0.00015161	0.034369	1.6094E-05	468.26914846799536	43.033	1.1605	43.033	42.534	43.695	0					95	31	4	0	0	0	0.18915	1	3988	3988		90.777	3.0224	1	6354200	+		4965	21299	2922	2937	6602	6602					0.053734911343553904
AVRPDAPLP	9	Unmodified	_AVRPDAPLP_					0	0	0			REV__ENSG00000102302|ENST00000375135|FGD1	REV__ENSG00000102302|ENST00000375135|FGD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.2691345214844	2	468.269084	934.523616	-0.048047	-2.2499E-05	0.071986	3.3709E-05	0.02394	1.121E-05	468.26901432019275	43.181	1.1925	43.042	42.558	43.751	-0.13929					103	32	4	0	0	0	0.29158	1	4023	4023		76.774	5.4784	1	6396800	+		4966	21299	2922	2937	6603	6603					0.053734911343553904
AVRPDAPLP	9	Unmodified	_AVRPDAPLP_					0	0	0			REV__ENSG00000102302|ENST00000375135|FGD1	REV__ENSG00000102302|ENST00000375135|FGD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2691955566406	2	468.269084	934.523616	1.0324	0.00048344	-1.0938	-0.00051218	-0.06136	-2.8733E-05	468.2684472312194	43.079	1.2005	43.11	42.646	43.847	0.030827					97	32	4	0	0	0	0.27161	1	3932	3932		79.451	2.6769	1	5775700	+		4967	21299	2922	2937	6604	6604					0.053734911343553904
AVRQLHIML	9	Unmodified	_AVRQLHIML_					0	0	0			REV__ENSG00000161800|ENST00000312377|RACGAP1	REV__ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.821044921875	2	540.820961	1079.62737	-0.28344	-0.00015329	-0.53656	-0.00029018	-0.81999	-0.00044347	540.820626521652	105.76	0.87628	105.64	105.44	106.32	-0.12444					59	31	3	0	0	0	0.90698	1	13196	13196		31.955	6.3808	1	286110	+		4968	25399	2923	2938	6605	6605					0.09074074970385482
AVRRGLAR	8	Unmodified	_AVRRGLAR_					0	0	0			REV__ENSG00000142751|ENST00000374135|GPN2	REV__ENSG00000142751|ENST00000374135|GPN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7722473144531	2	449.78831	897.562067	1.0409	0.00046819	2.0963	0.00094291	3.1373	0.0014111	449.789103940432	19.976	0.24612	19.776	19.603	19.85	-0.2001					7	4	2	0	0	0	0.027866	1	461	461		17.365	0	1	15489	+		4969	24182	2924	2939	6606	6606					0.10918841559566772
AVRSMKRKAS	10	Unmodified	_AVRSMKRKAS_					0	0	0		ENST00000245441.9_2_14:51243851-51259488:-|nuORF	ENST00000245441.9_2_14:51243851-51259488:-|nuORF	ENST00000245441.9_2_14:51243851-51259488:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3297729492188	2	567.332224	1132.6499	-1.2298	-0.00069771	-3.3256	-0.0018867	-4.5554	-0.0025844	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.1088	1	11137	11137		31.53	1.2121	1	17705000			4970	11311	2925	2940	6607	6607					0.08887674368020271
AVRVRRKT	8	Unmodified	_AVRVRRKT_					0	0	0		ENST00000533912.1_1_6:131191025-131199321:-|nuORF	ENST00000533912.1_1_6:131191025-131199321:-|nuORF	ENST00000533912.1_1_6:131191025-131199321:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.30841064453125	2	493.322517	984.630481	0.25059	0.00012362	2.0709	0.0010216	2.3215	0.0011453	493.32339465915015	69.027	0.45293	68.734	68.48	68.933	-0.29267					21	11	2	0	0	0	0.027866	1	8240	8240		25.45	1.2474	1	316160			4971	16323	2926	2941	6608	6608					0.13755086139406103
AVSGITLQI	9	Unmodified	_AVSGITLQI_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.27105712890625	2	451.271293	900.528032	-0.8024	-0.0003621	1.1576	0.00052239	0.35519	0.00016029	451.27170178644326	75.29	0.81467	75.29	74.955	75.769	0					51	21	5	0	0	0	0.013293	2	9240	9227;9240		176.09	41.388	1	1881300			4972	1268	2927	2942	6609;6610	6610					0.07378955557294375
AVSGITLQI	9	Unmodified	_AVSGITLQI_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2711486816406	2	451.271293	900.528032	-0.19644	-8.8648E-05	0.69183	0.0003122	0.49539	0.00022356	451.27147812989216	75.533	0.95314	75.289	74.958	75.911	-0.24455					54	25	3	0	0	0	0.014918	2	9229	9229;9239		162.25	32.57	1	1974300			4973	1268	2927	2942	6611;6612	6611					0.07378955557294375
AVSGITLQI	9	Unmodified	_AVSGITLQI_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.27178955078125	2	451.271293	900.528032	0.3173	0.00014319	0.17503	7.8987E-05	0.49233	0.00022217	451.27123068317445	75.362	1.1748	75.372	74.649	75.824	0.010368					59	30	3	0	0	0	0.013293	3	9183	9156;9169;9183		186.09	32.083	1	2046700			4974	1268	2927	2942	6613;6614;6615	6615					0.07378955557294375
AVSHARAVPE	10	Unmodified	_AVSHARAVPE_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.77978515625	2	518.780348	1035.54614	-0.18929	-9.8199E-05	-0.68366	-0.00035467	-0.87295	-0.00045287	518.7798810537632	51.525	1.0182	51.525	51.067	52.085	0					79	28	4	0	0	0	1.0236	1	5494	5494		42.864	7.246	1	8563100	+		4975	37192	2928	2943	6616	6616					0.029790905319941885
AVSKGSVRAV	10	Unmodified	_AVSKGSVRAV_					0	0	0			REV__ENST00000262544.6_1_20:18513386-18516339:+|nuORF	REV__ENST00000262544.6_1_20:18513386-18516339:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.29339599609375	2	487.293091	972.571629	-0.23305	-0.00011356	-0.64961	-0.00031655	-0.88266	-0.00043011	487.292578243981	89.93	1.0289	89.944	89.674	90.702	0.013443					74	24	4	0	0	0	1.0997	1	11292	11292		32.751	2.2469	1	3269400	+		4976	29663	2929	2944	6617	6617					0.08424565054417599
AVSLKPPPPEV	11	Unmodified	_AVSLKPPPPEV_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3296508789062	2	567.331882	1132.64921	-0.57331	-0.00032526	-2.9862	-0.0016942	-3.5595	-0.0020194	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	0.98542	1	10867	10867		40.058	4.4399	1	5699600			4977	4695	2930	2945	6618	6618					0.08819158199935373
AVSMSVVWPC	10	Unmodified	_AVSMSVVWPC_					0	0	0			REV__ENST00000461376.1_1_1:161089303-161089393:+|nuORF	REV__ENST00000461376.1_1_1:161089303-161089393:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7577514648438	2	539.756638	1077.49872	-0.4938	-0.00026653	4.2933	0.0023173	3.7995	0.0020508	539.7588393529953	16.637	0.15249	16.429	16.367	16.519	-0.20777					8	4	2	0	0	0	1.1217	1	82	82		21.96	2.5999	1	24994	+		4978	32874	2931	2946	6619	6619					-0.03692648054857273
AVSNLVSRAW	10	Unmodified	_AVSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.8036499023438	2	551.803823	1101.59309	-0.7241	-0.00039956	0.99135	0.00054703	0.26725	0.00014747	551.8043170930943	57.576	0.57879	57.398	57.096	57.675	-0.17775					43	14	4	0	0	0	0.29525	1	6296	6296		109.44	34.395	1	2144700			4979	12533	2932	2947	6620	6620					0.046359500831158584
AVSNLVSRAW	10	Unmodified	_AVSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.8035278320312	2	551.803823	1101.59309	0.091727	5.0616E-05	0.45931	0.00025345	0.55104	0.00030406	551.8042023814295	57.546	0.99348	57.356	56.795	57.789	-0.19017					54	26	4	0	0	0	0.20616	2	6289	6289;6301		120.31	39.851	1	2593800			4980	12533	2932	2947	6621;6622	6621					0.046359500831158584
AVSNLVSRAW	10	Unmodified	_AVSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.803466796875	2	551.803823	1101.59309	-0.68197	-0.00037632	0.79158	0.0004368	0.10961	6.0482E-05	551.8041002843273	57.702	0.60695	57.469	57.095	57.702	-0.23363					47	15	4	0	0	0	0.32213	2	6295	6295;6307		106.68	17.654	1	2203600			4981	12533	2932	2947	6623;6624	6623					0.046359500831158584
AVSRGEPGL	9	Unmodified	_AVSRGEPGL_					0	0	0			REV__nc|ENSG00000291317|P0DTL5|TMEM276	REV__nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2432556152344	2	443.243067	884.47158	-0.6829	-0.00030269	0.37576	0.00016655	-0.30715	-0.00013614	443.2432481723972	38.172	1.4344	38.089	37.636	39.071	-0.082516					105	39	4	0	0	0	0.27161	1	3187	3187		79.451	4.9344	1	21001000	+		4982	37240	2933	2948	6625	6625					0.024723277206248895
AVSRGEPGL	9	Unmodified	_AVSRGEPGL_					0	0	0			REV__nc|ENSG00000291317|P0DTL5|TMEM276	REV__nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.243067	884.47158	-0.53717	-0.0002381	2.8952	0.0012833	2.358	0.0010452	443.24622286531394	38.08	0.17547	37.862	37.718	37.894	-0.21849	-0.28786	0.0017657	NaN	79.451	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21515	+		4983	37240	2933	2948							0.024723277206248895
AVSRGPATP	9	Unmodified	_AVSRGPATP_					0	0	0		ENST00000586624.1_2_19:38709694-38718681:-|nuORF	ENST00000586624.1_2_19:38709694-38718681:-|nuORF	ENST00000586624.1_2_19:38709694-38718681:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.21978759765625	2	428.237784	854.461016	-0.2906	-0.00012444	-4.2025	-0.0017997	-4.4931	-0.0019241	428.23784222205165	27.353	0.59549	27.185	26.892	27.487	-0.16816					24	13	2	0	0	0	0.024427	1	1535	1535		19.997	10.814	1	333400			4984	17248	2934	2949	6626	6626					0.027963450661786737
AVSRLRTP	8	Unmodified	_AVSRLRTP_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2743225097656	2	450.274701	898.534849	-0.35559	-0.00016011	-0.72196	-0.00032508	-1.0775	-0.00048519	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	1.0284	1	11801	11801		32.812	3.6629	1	67958000	+		4985	28275	2935	2950	6627	6627					0.08152313228526964
AVSRPSVIQ	9	Unmodified	_AVSRPSVIQ_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7686462402344	2	478.779816	955.545079	-0.50085	-0.00023979	1.5287	0.0007319	1.0278	0.00049211	478.7801181677027	34.906	0.49211	34.884	34.593	35.085	-0.021763					18	12	2	0	0	0	0.024427	1	2627	2627		34.173	6.2903	1	443060			4986	6133	2936	2951	6628	6628					0.0655287616308442
AVSSFLFALI	10	Unmodified	_AVSSFLFALI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2739868164062	2	534.310418	1066.60628	-0.71811	-0.00038369	-3.4531	-0.001845	-4.1712	-0.0022287	534.3084498081088	94.029	1.0618	94.029	93.542	94.604	-0.00023651					63	25	4	0	0	0	0.03519	1	11994	11994		76.847	41.228	1	1267900			4987	8901	2937	2952	6629	6629					0.07564388142532152
AVSSIAQKI	9	Unmodified	_AVSSIAQKI_					0	0	0		nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1;nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.7767028808594	2	458.776742	915.538931	0.32843	0.00015068	0.019467	8.9309E-06	0.3479	0.00015961	458.77677612416494	42.664	0.72591	42.664	42.461	43.186	0					37	19	3	0	0	0	0.42604	1	3959	3959		64.207	10.856	1	2552300			4988	969	2938	2953	6630	6630					0.07778357931567825
AVSSIAQKI	9	Unmodified	_AVSSIAQKI_					0	0	0		nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1;nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.77685546875	2	458.776742	915.538931	0.15331	7.0334E-05	0.15241	6.9923E-05	0.30572	0.00014026	458.7768616495218	42.833	0.65309	42.694	42.521	43.174	-0.13929					32	17	3	0	0	0	0.32811	1	3953	3953		71.877	11.584	1	2475100			4989	969	2938	2953	6631	6631					0.07778357931567825
AVSSIAQKI	9	Unmodified	_AVSSIAQKI_					0	0	0		nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1;nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	458.776742	915.538931	0.56204	0.00025785	-0.28439	-0.00013047	0.27765	0.00012738	458.77661908240464	42.751	0.693	42.777	42.605	43.298	0.026012	0.065784	-0.00022373	NaN	71.877	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2398600			4990	969	2938	2953							0.07778357931567825
AVSSLKVF	8	Unmodified	_AVSSLKVF_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7751159667969	2	425.755278	849.496004	0.17012	7.2431E-05	-3.2183	-0.0013702	-3.0482	-0.0012978	425.7545450744641	42.073	0.40859	41.95	41.786	42.195	-0.12299					16	10	2	0	0	0	0.027866	1	3748	3748		50.025	2.1089	1	139740			4991	7027	2939	2954	6632	6632					0.06523587874141867
AVSSSSPTPP	10	Unmodified	_AVSSSSPTPP_					0	0	0		ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2772521972656	2	465.232364	928.450176	0.12642	5.8817E-05	0.038024	1.769E-05	0.16445	7.6506E-05	465.2322631890949	49.851	0.70388	49.7	49.256	49.96	-0.1512					27	18	2	0	0	0	0.03519	1	5079	5079		35.618	10.044	1	234730			4992	5437	2940	2955	6633	6633					-0.01691102098743613
AVSSVLLAGGL	11	Unmodified	_AVSSVLLAGGL_					0	0	0		ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7510070800781	2	493.797675	985.580796	-0.1382	-6.8242E-05	4.3119	0.0021292	4.1737	0.002061	493.7996728388982	45.258	0.71178	45.258	44.934	45.646	0					61	20	4	0	0	0	0.024743	1	4436	4436		9.7057	0	1	3526400			4993	5916	2941	2956	6634	6634					0.08742913620108084
AVSTILLAVG	10	Unmodified	_AVSTILLAVG_					0	0	0			REV__ENSG00000179615|ENST00000641114|OR2AP1	REV__ENSG00000179615|ENST00000641114|OR2AP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.79473876953125	2	472.294768	942.574983	0.77992	0.00036835	2.9496	0.0013931	3.7295	0.0017614	472.2971518105763	19.307	0.49444	19.107	18.811	19.305	-0.2001					23	9	3	0	0	0	0.03519	1	412	412		27.882	7.8855	1	128030	+		4994	27282	2942	2957	6635	6635					0.1013981510842541
AVTALAARTW	10	Unmodified	_AVTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.3004760742188	2	530.300916	1058.58728	-0.66297	-0.00035157	-0.34114	-0.00018091	-1.0041	-0.00053248	530.3006859244194	54.394	0.77495	54.258	53.959	54.734	-0.13617					59	21	5	0	0	0	0.0059825	3	5785	5773;5785;5796		177.3	76.759	1	5882700			4995	18268	2943	2958	6636;6637;6638	6637					0.0603285157146729
AVTALAARTW	10	Unmodified	_AVTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.3005981445312	2	530.300916	1058.58728	-0.44863	-0.00023791	-0.55522	-0.00029443	-1.0038	-0.00053234	530.3006468174243	54.548	0.79578	54.303	54.01	54.806	-0.2453					58	22	3	0	0	0	0.0059825	3	5785	5785;5795;5807		177.3	99.987	1	5875400			4996	18268	2943	2958	6639;6640;6641	6639					0.0603285157146729
AVTALAARTW	10	Unmodified	_AVTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3004760742188	2	530.300916	1058.58728	0.60327	0.00031991	-2.3984	-0.0012719	-1.7951	-0.00095195	530.3001084844536	54.477	0.73829	54.271	53.947	54.685	-0.20613					67	19	6	0	0	0	0.0059825	2	5771	5771;5784		177.3	92.144	1	4923800			4997	18268	2943	2958	6642;6643	6642					0.0603285157146729
AVTDASFKV	9	Unmodified	_AVTDASFKV_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.2537536621094	2	469.2531	936.491647	0.16973	7.9647E-05	-0.15965	-7.4915E-05	0.010084	4.7321E-06	469.25284487479576	48.917	0.73944	48.917	48.585	49.324	0					52	20	4	0	0	0	0.10174	1	5021	5021		110.12	8.5192	1	2841800			4998	5035	2944	2959	6644	6644					0.0208607866057946
AVTDASFKV	9	Unmodified	_AVTDASFKV_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.2538146972656	2	469.2531	936.491647	-0.021036	-9.871E-06	0.31375	0.00014723	0.29271	0.00013736	469.2530776181004	49.131	0.8721	48.978	48.646	49.518	-0.15277					59	23	4	0	0	0	0.053401	1	5027	5027		127.46	25.861	1	2678000			4999	5035	2944	2959	6645	6645					0.0208607866057946
AVTDASFKV	9	Unmodified	_AVTDASFKV_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2537841796875	2	469.2531	936.491647	-0.22374	-0.00010499	0.4829	0.0002266	0.25916	0.00012161	469.2530936578028	48.795	0.86758	48.862	48.553	49.421	0.066795					57	23	4	0	0	0	0.03849	2	4940	4940;4951		134.81	21.399	1	2531700			5000	5035	2944	2959	6646;6647	6646					0.0208607866057946
AVTDASFKV	9	Unmodified	_AVTDASFKV_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.2531	936.491647	-0.55879	-0.00026221	0.66072	0.00031004	0.10193	4.7831E-05	469.2532735947481	48.993	0.57097	48.892	48.655	49.226	-0.1008	-0.043157	0.00036855	NaN	134.81	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500830			5001	5035	2944	2959							0.0208607866057946
AVTDASFKV	9	Unmodified	_AVTDASFKV_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.2531	936.491647	-0.051829	-2.4321E-05	-0.22606	-0.00010608	-0.27789	-0.0001304	469.25282737379325	49.302	0.48913	49.022	48.791	49.28	-0.27977	0.086635	-0.00046369	NaN	134.81	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671070			5002	5035	2944	2959							0.0208607866057946
AVTDASFKV	9	Unmodified	_AVTDASFKV_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	469.2531	936.491647	-0.41517	-0.00019482	0.2955	0.00013867	-0.11967	-5.6155E-05	469.25315880315105	49.123	0.6061	48.941	48.738	49.344	-0.18206	0.0057963	2.5799E-05	NaN	134.81	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534790			5003	5035	2944	2959							0.0208607866057946
AVTENLGASL	10	Unmodified	_AVTENLGASL_					0	0	0			REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7773742675781	2	487.761289	973.508025	-0.28731	-0.00014014	-1.6441	-0.00080191	-1.9314	-0.00094205	487.76040417843336	41.927	0.70656	41.804	41.527	42.234	-0.12299					27	18	2	0	0	0	0.03519	1	3697	3697		56.721	15.943	1	305180	+		5004	37529	2945	2960	6648	6648					0.020211598266882902
AVTGRGLAV	9	Unmodified	_AVTGRGLAV_					0	0	0		ENST00000548191.1_2_12:110511353-110511446:-|nuORF	ENST00000548191.1_2_12:110511353-110511446:-|nuORF	ENST00000548191.1_2_12:110511353-110511446:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.2564697265625	2	422.255977	842.497401	-0.42992	-0.00018154	0.24941	0.00010532	-0.18051	-7.6221E-05	422.25596144628486	21.843	1.0959	21.631	21.315	22.411	-0.21222					43	22	3	0	0	0	0.67308	1	700	700		47.916	3.3845	1	648010			5005	16548	2946	2961	6649	6649					0.06985221962906962
AVTTAAAVPSL	11	Unmodified	_AVTTAAAVPSL_					0	0	0			REV__ENST00000316586.8_1_2:242447526-242448070:-|nuORF	REV__ENST00000316586.8_1_2:242447526-242448070:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.28948974609375	2	500.787307	999.560061	-0.28066	-0.00014055	1.8829	0.00094295	1.6023	0.0008024	501.2900535241059	87.727	1.1522	87.589	87.163	88.315	-0.13734					72	27	4	0	0	0	0.9728	1	10624	10624		42.864	4.0581	1	2622700	+		5006	30280	2947	2962	6650	6650					0.060263232404167866
AVTTKFRD	8	Unmodified	_AVTTKFRD_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.28155517578125	2	469.258717	936.50288	-0.77811	-0.00036514	0.49942	0.00023436	-0.27869	-0.00013078	469.25895424464693	45.455	0.49594	45.243	44.988	45.484	-0.21109					23	14	2	0	0	0	0.027866	1	4302	4302		44.117	17.424	1	458080	+		5007	23482	2948	2963	6651	6651					0.032089007547028814
AVVDRLAVV	9	Unmodified	_AVVDRLAVV_					0	0	0			REV__nc|nan|Q8IXR9-2|C12orf56	REV__nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2742919921875	2	471.292559	940.570566	0.38818	0.00018295	-1.4735	-0.00069445	-1.0853	-0.0005115	471.2918189680751	42.246	0.5215	42.272	42.12	42.641	0.026012					20	14	2	0	0	0	0.023817	1	3815	3815		82.305	2.854	1	193470	+		5008	27754	2949	2964	6652	6652					0.0979035068551184
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MSMS	OPSCC_39_ClassI_Rep-1	1	482.7709655761719	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.843	1	82.843	82.343	83.343	0								0	0	0	0.10746	1	10349	10349		90.777	27.47	1				5009	3284	2950	2965	6653	6653					0.044475358374370444
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MSMS	OPSCC_39_ClassI_Rep-1	1	482.7711181640625	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.923	1	82.923	82.423	83.423	0								0	0	0	0.052088	1	10360	10360		108.09	39.603	1				5010	3284	2950	2965	6654	6654					0.044475358374370444
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MSMS	OPSCC_39_ClassI_Rep-2	2	482.7708740234375	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.928	1	82.818	82.318	83.318	-0.11006								0	0	0	0.071952	1	10326	10326		99.375	43.871	1				5011	3284	2950	2965	6655	6655					0.044475358374370444
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MSMS	OPSCC_39_ClassI_Rep-2	2	482.77105712890625	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83	1	82.909	82.409	83.409	-0.090454								0	0	0	0.29326	1	10336	10336		68.787	20.871	1				5012	3284	2950	2965	6656	6656					0.044475358374370444
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MSMS	OPSCC_39_ClassI_Rep-3	3	482.77117919921875	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.769	1	82.795	82.295	83.295	0.026558								0	0	0	0.026904	1	10261	10261		120.62	49.325	1				5013	3284	2950	2965	6657	6657					0.044475358374370444
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.77044677734375	2	482.771126	963.527698	0.85403	0.0004123	0.15098	7.2888E-05	1.005	0.00048519	482.7705364802293	82.892	1.0376	82.672	82.347	83.385	-0.22015					50	23	3	0	0	0	0.27161	2	9981	9981;9993		79.451	28.116	1	768140			5014	3284	2950	2965	6658;6659	6658					0.044475358374370444
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.77130126953125	2	482.771126	963.527698	0.2389	0.00011533	0.73739	0.00035599	0.97629	0.00047132	482.77083240995614	82.862	0.81631	82.681	82.418	83.234	-0.18079					47	18	4	0	0	0	0.11092	2	10001	10001;10013		108.09	39.603	1	722560			5015	3284	2950	2965	6660;6661	6660					0.044475358374370444
AVVEFLTSV	9	Unmodified	_AVVEFLTSV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.77081298828125	2	482.771126	963.527698	-0.1083	-5.2282E-05	1.1041	0.00053304	0.99584	0.00048076	482.7709378915131	82.871	0.8622	82.731	82.434	83.296	-0.14014					54	19	4	0	0	0	0.15029	3	9968	9968;9979;9991		99.375	30.89	1	726150			5016	3284	2950	2965	6662;6663;6664	6662					0.044475358374370444
AVVLTVKASY	10	Unmodified	_AVVLTVKASY_					0	0	0		nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2	nc|ENSG00000066032|P26232-4|CTNNA2	nc|ENSG00000066032|P26232-4|CTNNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2532348632812	2	525.813325	1049.6121	-0.31318	-0.00016468	0.20023	0.00010529	-0.11295	-5.9391E-05	525.8130556627667	45.906	0.51694	45.645	45.451	45.968	-0.26118					26	13	3	0	0	0	0.03519	1	4420	4420		32.812	12.816	1	133790			5017	1328	2951	2966	6665	6665					0.08927486654192762
AVVLVTLAGI	10	Unmodified	_AVVLVTLAGI_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.30035400390625	2	478.312961	954.611368	0.91481	0.00043757	-2.2976	-0.001099	-1.3828	-0.0006614	478.31172922136307	72.837	0.77702	72.556	72.303	73.08	-0.28124					40	18	4	0	0	0	0.03519	1	8851	8851		65.803	7.0212	1	736700			5018	6215	2952	2967	6666	6666					0.13224692005132965
AVVMLMVAI	9	Unmodified	_AVVMLMVAI_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.77874755859375	2	473.776842	945.539131	0.27668	0.00013108	2.0372	0.00096517	2.3139	0.0010963	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.65391	1	966	966		49.211	4.6797	1	5959600			5019	8159	2953	2968	6667	6667					0.06418318335545337
AVVPVSAIL	9	Unmodified	_AVVPVSAIL_					0	0	0			REV__ENSG00000184156|ENST00000388996|KCNQ3	REV__ENSG00000184156|ENST00000388996|KCNQ3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7799987792969	2	434.778754	867.542954	-0.095049	-4.1325E-05	3.2879	0.0014295	3.1928	0.0013882	434.78010469367223	36.167	2.0758	36.205	35.569	37.645	0.038044					161	55	3	0	0	0	0.72268	1	2753	2753		44.531	0	1	9580100	+		5020	27639	2954	2969	6668	6668					0.10388447425293634
AVVPVSAIL	9	Unmodified	_AVVPVSAIL_					0	0	0			REV__ENSG00000184156|ENST00000388996|KCNQ3	REV__ENSG00000184156|ENST00000388996|KCNQ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801513671875	2	434.778754	867.542954	0.15534	6.7538E-05	3.0454	0.0013241	3.2007	0.0013916	434.77996518621967	36.241	1.8835	36.025	35.43	37.314	-0.21661					124	49	3	0	0	0	0.72268	1	2776	2776		44.531	0	1	8069600	+		5021	27639	2954	2969	6669	6669					0.10388447425293634
AVVPVSAKT	9	Unmodified	_AVVPVSAKT_					0	0	0			REV__ENSG00000134115|ENST00000446702|CNTN6	REV__ENSG00000134115|ENST00000446702|CNTN6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.1701354980469	2	436.26601	870.517468	-0.73354	-0.00032002	1.2926	0.0005639	0.55902	0.00024388	436.2663738311589	27.634	0.49523	27.466	27.273	27.768	-0.16816					27	11	3	0	0	0	0.024466	1	1525	1525		33.516	14.156	1	523210	+		5022	23422	2955	2970	6670	6670					0.07702972902859528
AVVPVSAKT	9	Unmodified	_AVVPVSAKT_					0	0	0			REV__ENSG00000134115|ENST00000446702|CNTN6	REV__ENSG00000134115|ENST00000446702|CNTN6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	436.26601	870.517468	-0.23982	-0.00010463	0.54232	0.0002366	0.3025	0.00013197	436.26601665725593	27.837	0.67497	27.593	27.248	27.923	-0.2436	0.015661	-5.5837E-05	NaN	33.516	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424540	+		5023	23422	2955	2970							0.07702972902859528
AVVPVSAKT	9	Unmodified	_AVVPVSAKT_					0	0	0			REV__ENSG00000134115|ENST00000446702|CNTN6	REV__ENSG00000134115|ENST00000446702|CNTN6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	436.26601	870.517468	0.15422	6.7282E-05	0.060174	2.6252E-05	0.2144	9.3534E-05	436.26584262161157	27.825	0.52282	27.673	27.438	27.961	-0.15195	0.095436	-0.00047653	NaN	33.516	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647970	+		5024	23422	2955	2970							0.07702972902859528
AVVQILAPMF	10	Unmodified	_AVVQILAPMF_					0	0	0		MAS1L|p.S269L|1|0.16|ENSG00000204687|chr6:29487097-29487097|G/A|missense_variant	MAS1L|p.S269L|1|0.16|ENSG00000204687|chr6:29487097-29487097|G/A|missense_variant	MAS1L|p.S269L|1|0.16|ENSG00000204687|chr6:29487097-29487097|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3193359375	2	544.81227	1087.60999	3.9916	0.0021747	2.4624	0.0013416	6.454	0.0035162	544.8136915403146	17.899	0.66283	17.96	17.786	18.449	0.06036					18	14	2	0	0	0	1.1166	1	183	183		30.504	1.3541	1	78060			5025	17953	2956	2971	6671	6671					0.06968734644715369
AVVRNAGL	8	Unmodified	_AVVRNAGL_					0	0	0		sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.2431945800781	2	400.24287	798.471186	1.5279	0.00061154	-0.50464	-0.00020198	1.0233	0.00040956	400.24248419490914	19.712	0.76245	19.712	19.463	20.225	0					35	15	3	0	0	0	0.58212	1	452	452		77.944	3.4272	1	345810			5026	37952	2957	2972	6672	6672					0.06388952791428437
AVVSHFLEV	9	Unmodified	_AVVSHFLEV_					0	0	0		ENST00000608637.1_1_10:46221881-46222187:-|nuORF	ENST00000608637.1_1_10:46221881-46222187:-|nuORF	ENST00000608637.1_1_10:46221881-46222187:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2940673828125	2	500.776742	999.538931	0.46857	0.00023465	2.8662	0.0014353	3.3347	0.00167	500.7781140878152	78.152	0.5903	77.915	77.538	78.128	-0.23674					20	13	2	0	0	0	0.024506	1	9310	9310		38.806	25.031	1	142350			5027	17595	2958	2973	6673	6673					0.03914357931569157
AVVTHRVKKAI	11	Unmodified	_AVVTHRVKKAI_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;CSMD3|p.L722Cfs*24|1|0.53|ENSG00000164796|chr8:112685724-112685724|G/-|frameshift_variant;CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	611.3560791015625	2	611.393139	1220.77173	-1.4825	-0.00090639	-3.9442	-0.0024114	-5.4266	-0.0033178	611.3912457448712	94.403	0.31683	94.409	94.131	94.448	0.0059891					12	7	2	0	0	0	0.024749	1	11909	11909		35.152	22.34	1	40043			5028	593	2959	2974	6674	6674					0.17017039722031768
AVVVGLLSR	9	Unmodified	_AVVVGLLSR_					0	0	0			REV__ENST00000241436.8_1_5:74807598-74807733:+|nuORF	REV__ENST00000241436.8_1_5:74807598-74807733:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7972412109375	2	457.295102	912.575651	-0.948	-0.00043351	0.052636	2.407E-05	-0.89536	-0.00040944	457.2949870861727	65.309	0.68436	65.036	64.712	65.396	-0.27282					35	18	3	0	0	0	0.024325	1	7664	7664		40.573	0	1	1024700	+		5029	29450	2960	2975	6675	6675					0.11586654548125352
AVVVGPSRL	9	Unmodified	_AVVVGPSRL_					0	0	0			REV__ENST00000422364.2_1_11:63994043-63994784:+|nuORF	REV__ENST00000422364.2_1_11:63994043-63994784:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.2785339355469	2	449.279452	896.544351	0.072224	3.2449E-05	-0.074081	-3.3283E-05	-0.0018566	-8.3415E-07	449.27930437967393	57.839	0.90779	57.664	57.345	58.252	-0.1749					36	24	2	0	0	0	0.29104	1	6479	6479		76.847	2.5916	1	3673500	+		5030	32201	2961	2976	6676	6676					0.09194081514044683
AVWIEDQNW	9	Unmodified	_AVWIEDQNW_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.7722778320312	2	580.772188	1159.52982	-0.35066	-0.00020365	0.40307	0.00023409	0.052417	3.0442E-05	580.7721655781075	78.34	0.8111	78.108	77.709	78.52	-0.23141					45	18	3	0	0	0	0.091713	1	9355	9355		113.41	25.715	1	955700			5031	8057	2962	2977	6677	6677					-0.043560354247802024
AVWIEDQNW	9	Unmodified	_AVWIEDQNW_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	580.772188	1159.52982	-0.26973	-0.00015665	0.095199	5.5289E-05	-0.17453	-0.00010136	580.7721215280752	78.446	0.6886	78.192	77.869	78.557	-0.25471	0.065979	-0.00023621	NaN	113.41	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828800			5032	8057	2962	2977							-0.043560354247802024
AVWIEDQNW	9	Unmodified	_AVWIEDQNW_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	580.772188	1159.52982	-0.48826	-0.00028357	0.54641	0.00031734	0.058148	3.3771E-05	580.7722746369251	78.233	1.0311	78.077	77.7	78.731	-0.15592	-0.048443	0.00028789	NaN	113.41	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	751710			5033	8057	2962	2977							-0.043560354247802024
AVWLGRLD	8	Unmodified	_AVWLGRLD_					0	0	0		ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2868347167969	2	465.263802	928.513051	0.054774	2.5484E-05	0.7309	0.00034006	0.78567	0.00036555	465.2632681648181	75.552	0.31281	75.377	75.234	75.547	-0.17548					15	7	3	0	0	0	0.027866	1	8955	8955		28.254	0	1	140090			5034	10980	2963	2978	6678	6678					0.04593508479945285
AVWLTAIMAT	10	Unmodified	_AVWLTAIMAT_					0	0	0		ENSG00000179934|ENST00000326306|CCR8;nc|ENSG00000179934|P51685-2|CCR8	ENSG00000179934|ENST00000326306|CCR8	ENSG00000179934|ENST00000326306|CCR8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7921142578125	2	538.794078	1075.5736	-0.40783	-0.00021974	-4.0021	-0.0021563	-4.41	-0.0023761	538.7919621393576	37.643	1.1427	37.45	37.114	38.257	-0.193					79	31	4	0	0	0	0.91051	1	3059	3059		53.351	5.4358	1	8140900			5035	8943	2964	2979	6679	6679					0.03883857747996444
AVYAVYDTTDP	11	Unmodified	_AVYAVYDTTDP_					0	0	0			REV__nc|ENSG00000185634|Q6S5L8-2|SHC4;REV__nc|ENSG00000148082|Q92529-2|SHC3	REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	606.8333129882812	2	607.782418	1213.55028	-0.40604	-0.00024679	-2.5924	-0.0015756	-2.9984	-0.0018224	607.7810827820356	54.902	0.42022	54.751	54.474	54.894	-0.15036					17	11	2	0	0	0	0.023873	1	6011	6011		60.118	28.588	1	160010	+		5036	27778;24592	2965	2980	6680	6680					-0.04794909555630511
AVYIRAETI	9	Unmodified	_AVYIRAETI_					0	0	0			REV__ENSG00000214338|ENST00000525778|SOGA3;REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF	REV__ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2977905273438	2	518.295299	1034.57605	-0.78256	-0.0004056	4.4189	0.0022903	3.6364	0.0018847	518.2976765003833	102.67	3.4549	102.67	101.08	104.53	0					224	81	6	0	0	0	0.25032	1	13177	13177		82.305	5.4584	1	63214000	+		5037	28776;33270	2966	2981	6681	6681					0.060140294773418645
AVYPPGPIL	9	Unmodified	_AVYPPGPIL_					0	0	0			REV__RHBDD3|p.P234L|1|0.39|ENSG00000100263|chr22:29260608-29260608|G/A|missense_variant	REV__RHBDD3|p.P234L|1|0.39|ENSG00000100263|chr22:29260608-29260608|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.276611328125	2	463.770929	925.527304	0.411	0.00019061	-4.3992	-0.0020402	-3.9882	-0.0018496	463.76884796222333	56.88	0.77581	56.975	56.544	57.32	0.095306					34	21	2	0	0	0	0.024289	1	6229	6229		29.842	0	1	341960	+		5038	37439	2967	2982	6682	6682					0.06156160908221864
AVYTVPSSML	10	Unmodified	_AVYTVPSSML_					0	0	0		ENST00000602622.5_1_16:67692569-67692746:-|nuORF;ENST00000602860.5_1_16:67691511-67693112:-|nuORF;nc|ENSG00000102977|Q96AP0-2|ACD;ENSG00000102977|ENST00000620761|ACD	ENST00000602622.5_1_16:67692569-67692746:-|nuORF	ENST00000602622.5_1_16:67692569-67692746:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.27392578125	2	534.275718	1066.53688	-0.12828	-6.8538E-05	-2.7725	-0.0014813	-2.9008	-0.0015498	534.2740949011198	89.036	0.96481	89.052	88.753	89.717	0.015907					62	22	4	0	0	0	0.47726	1	11149	11149		90.777	5.4172	1	2617000			5039	2450	2968	2983	6683	6683					0.006275611314549678
AWAKAAVGLL	10	Unmodified	_AWAKAAVGLL_					0	0	0			REV__ENSG00000168427|ENST00000409223|KLHL30	REV__ENSG00000168427|ENST00000409223|KLHL30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8053283691406	2	500.302927	998.591301	-0.38424	-0.00019223	2.3344	0.0011679	1.9502	0.0009757	500.80533676812075	60.105	1.386	59.905	59.577	60.963	-0.20016					97	36	6	0	0	0	1.0665	1	6856	6856		37.159	1.5408	1	21076000	+		5040	26257	2969	2984	6684	6684					0.09194941065175044
AWARALAR	8	Unmodified	_AWARALAR_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7975769042969	2	457.769586	913.524619	-0.86024	-0.00039379	0.61868	0.00028321	-0.24155	-0.00011058	457.7700586671111	64.933	0.25495	64.933	64.836	65.091	0					9	6	2	0	0	0	0.027866	1	7664	7664		55.504	11.127	1	170990	+		5041	28823	2970	2985	6685	6685					0.06439750293941415
AWDADAQKN	9	Unmodified	_AWDADAQKN_					0	0	0		nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12;PCDHA7|p.G480W|1|0.47|ENSG00000204963|chr5:140835821-140835821|G/T|missense_variant;PCDHA12|p.S478L|1|0.11|ENSG00000251664|chr5:140876905-140876905|C/T|missense_variant	nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2774658203125	2	509.733063	1017.45157	-0.52688	-0.00026857	4.4909	0.0022892	3.964	0.0020206	509.73498500415593	34.189	0.73511	34.189	33.894	34.629	0					25	18	2	0	0	0	0.023417	1	2545	2545		90.777	24.973	1	59171			5042	10855	2971	2986	6686	6686					-0.05645468010004606
AWDADAQKN	9	Unmodified	_AWDADAQKN_					0	0	0		nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12;PCDHA7|p.G480W|1|0.47|ENSG00000204963|chr5:140835821-140835821|G/T|missense_variant;PCDHA12|p.S478L|1|0.11|ENSG00000251664|chr5:140876905-140876905|C/T|missense_variant	nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.277099609375	2	509.733063	1017.45157	-0.19303	-9.8393E-05	3.81	0.0019421	3.6169	0.0018437	509.7347574717473	33.943	0.62182	33.939	33.676	34.298	-0.0045624					22	15	2	0	0	0	0.023817	1	2488	2488		71.296	34.137	1	47338			5043	10855	2971	2986	6687	6687					-0.05645468010004606
AWFWTDDIEDH	11	Unmodified	_AWFWTDDIEDH_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.74566650390625	3	478.870208	1433.58879	0.21733	0.00010407	3.8222	0.0018303	4.0395	0.0019344	478.87195976627726	52.948	0.26097	52.948	52.75	53.011	0					11	6	2	0	0	0	0.024792	1	5699	5699		24.232	11.799	1	85038			5044	10454	2972	2987	6688	6688					-0.11065603921110778
AWHPHHLFV	9	Unmodified	_AWHPHHLFV_					0	0	0			REV__SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant	REV__SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	572.8402709960938	2	572.295968	1142.57738	-0.33561	-0.00019207	2.521	0.0014427	2.1854	0.0012507	572.2976313497583	76.786	0.49323	76.8	76.407	76.9	0.013504					18	11	2	0	0	0	0.024541	1	9387	9387		21.702	0	1	159490	+		5045	37504	2973	2988	6689	6689					0.01179708356721676
AWLAVELY	8	Unmodified	_AWLAVELY_					0	0	0		ENST00000503674.5_1_5:250762-256532:+|nuORF	ENST00000503674.5_1_5:250762-256532:+|nuORF	ENST00000503674.5_1_5:250762-256532:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7588195800781	2	482.760561	963.506569	-0.057879	-2.7942E-05	-4.0202	-0.0019408	-4.078	-0.0019687	482.7584136896763	49.623	1.0199	49.344	49.011	50.031	-0.27977					58	26	4	0	0	0	0.94001	1	4980	4980		46.766	6.1938	1	2214700			5046	15698	2974	2989	6690	6690					0.023355705285553086
AWLDEGAPGLD	11	Unmodified	_AWLDEGAPGLD_					0	0	0			REV__ENST00000396425.7_1_22:42392631-42392787:+|nuORF	REV__ENST00000396425.7_1_22:42392631-42392787:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.2699584960938	2	572.269478	1142.5244	-1.0237	-0.00058583	2.236	0.0012796	1.2123	0.00069375	572.2706469274149	84.901	1.0795	84.926	84.579	85.659	0.025528					69	25	5	0	0	0	0.96599	1	10567	10567		44.377	1.9027	1	1229600	+		5047	31736	2975	2990	6691	6691					-0.04115759007231645
AWLGGRRVW	9	Unmodified	_AWLGGRRVW_					0	0	0		ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENST00000555762.1_1_14:94517539-94521656:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8065185546875	2	550.809242	1099.60393	-0.34511	-0.00019009	1.5349	0.00084544	1.1898	0.00065535	550.8086924190409	57.974	0.97694	57.741	56.989	57.966	-0.23363					54	25	3	0	0	0	0.85941	1	6363	6363		35.201	1.0282	1	1349300			5048	16691	2976	2991	6692	6692					0.058113972480896336
AWLNPTEV	8	Unmodified	_AWLNPTEV_					0	0	0		ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2509765625	2	465.239993	928.465432	-1.1885	-0.00055296	1.4912	0.00069378	0.30268	0.00014082	465.2406920407761	65.6	0.53545	65.387	65.094	65.629	-0.21327					22	12	3	0	0	0	0.027866	1	7471	7471		37.159	11.709	1	93085			5049	7901	2977	2992	6693	6693					-0.0016619051090174253
AWLSATPLL	9	Unmodified	_AWLSATPLL_					0	0	0			REV__ENST00000232766.5_1_3:47385586-47385907:+|nuORF	REV__ENST00000232766.5_1_3:47385586-47385907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.771240234375	2	486.28166	970.548768	0.27965	0.00013599	1.0009	0.0004867	1.2805	0.00062269	486.28233757837444	56.816	0.30173	56.614	56.482	56.783	-0.20209					11	7	2	0	0	0	0.024541	1	6185	6185		24.203	0	1	436460	+		5050	29412	2978	2993	6694	6694					0.06231545936952898
AWLSDVVPK	9	Unmodified	_AWLSDVVPK_					0	0	0			REV__ENSG00000171724|ENST00000302536|VAT1L	REV__ENSG00000171724|ENST00000302536|VAT1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.8017272949219	2	507.784567	1013.55458	-0.20534	-0.00010427	-1.706	-0.00086627	-1.9113	-0.00097054	507.78298655057597	55.448	0.75078	55.292	55.027	55.778	-0.15602					60	20	5	0	0	0	0.024323	1	6086	6086		53.351	0	1	1577800	+		5051	26595	2979	2994	6695	6695					0.04834644448612835
AWPGLALPL	9	Unmodified	_AWPGLALPL_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.277099609375	2	469.278921	936.543289	0.01001	4.6973E-06	-4.3187	-0.0020267	-4.3087	-0.002022	469.2768016189534	49.86	1.0709	49.86	49.473	50.544	0					66	30	3	0	0	0	0.32257	2	5176	5176;5188		72.62	9.6415	1	4447200			5052	6126	2980	2995	6696;6697	6696					0.072478671451222
AWPGLALPL	9	Unmodified	_AWPGLALPL_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2772216796875	2	469.278921	936.543289	0.087996	4.1295E-05	-4.3116	-0.0020233	-4.2236	-0.001982	469.2767886323168	49.75	1.0047	49.824	49.465	50.47	0.074192					63	28	3	0	0	0	0.65391	1	5106	5106		49.211	10.189	1	4226500			5053	6126	2980	2995	6698	6698					0.072478671451222
AWPPLLLVL	9	Unmodified	_AWPPLLLVL_					0	0	0			REV__ENSG00000181656|ENST00000315033|GPR88	REV__ENSG00000181656|ENST00000315033|GPR88	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.32891845703125	2	511.325871	1020.63719	0.43297	0.00022139	2.0515	0.001049	2.4844	0.0012704	511.32677913430695	105.95	0.38531	105.79	105.49	105.87	-0.16132					22	15	2	0	0	0	1.0281	1	13182	13182		14.664	0.88877	1	76223	+		5054	27416	2981	2996	6699	6699					0.12769586247418374
AWPTDDEFQ	9	Unmodified	_AWPTDDEFQ_					0	0	0			REV__ENST00000555226.1_1_14:81862181-81864726:-|nuORF	REV__ENST00000555226.1_1_14:81862181-81864726:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3237915039062	2	554.732729	1107.4509	0.20608	0.00011432	-3.9105	-0.0021693	-3.7044	-0.002055	554.7306649195741	50.996	1.0233	50.996	50.512	51.535	0					42	28	2	0	0	0	0.024523	1	5309	5309		10.265	0	1	176580	+		5055	23984	2982	2997	6700	6700					-0.0985230744972796
AWPTKGLVMS	10	Oxidation (M)	_AWPTKGLVM(Oxidation (M))S_		AWPTKGLVM(1)S		AWPTKGLVM(62)S	0	0	1		ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.2894897460938	2	553.289159	1104.56377	0.13272	7.343E-05	-0.7345	-0.00040639	-0.60178	-0.00033296	553.2886507098052	41.59	1.0308	41.59	41.225	42.255	0					75	29	4	0	0	0	0.77808	1	3785	3785		62.107	16.135	1	1637400			5056	14769	2983	2998	6701	6701		513			0.015666697426240717
AWPTKGLVMS	10	Oxidation (M)	_AWPTKGLVM(Oxidation (M))S_					0	0	1		ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.289159	1104.56377	-0.59442	-0.00032889	0.092525	5.1193E-05	-0.50189	-0.00027769	553.2890957473768	41.72	0.93056	41.587	41.285	42.216	-0.1322	-0.026238	0.0003461	NaN	62.107	76	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1621300			5057	14769	2983	2998				513			0.015666697426240717
AWPTKGLVMS	10	Oxidation (M)	_AWPTKGLVM(Oxidation (M))S_					0	0	1		ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.289159	1104.56377	-0.15438	-8.5417E-05	-0.40098	-0.00022186	-0.55536	-0.00030727	553.288841996944	41.705	0.89124	41.728	41.464	42.355	0.023006	0.11443	-0.0002	NaN	62.107	73	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1880300			5058	14769	2983	2998				513			0.015666697426240717
AWPTKGLVMS	10	Oxidation (M)	_AWPTKGLVM(Oxidation (M))S_					0	0	1		ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.289159	1104.56377	-0.20246	-0.00011202	1.649	0.00091239	1.4466	0.00080037	553.290216002252	41.635	0.72968	41.5	41.295	42.025	-0.13468	-0.11366	0.0020685	NaN	62.107	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156730			5059	14769	2983	2998				513			0.015666697426240717
AWPTKGLVMS	10	Oxidation (M)	_AWPTKGLVM(Oxidation (M))S_					0	0	1		ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	ENST00000464738.1_1_2:97285202-97285440:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.289159	1104.56377	-0.4431	-0.00024516	1.5741	0.00087093	1.131	0.00062577	553.2902721347536	41.894	0.68581	41.662	41.469	42.155	-0.23186	0.048778	0.0019856	NaN	62.107	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155360			5060	14769	2983	2998				513			0.015666697426240717
AWREGPELY	9	Unmodified	_AWREGPELY_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000023055	REV__CON__ENSEMBL:ENSBTAP00000023055	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7971801757812	2	560.774731	1119.53491	-0.17417	-9.7672E-05	-3.9275	-0.0022024	-4.1017	-0.0023001	560.7714706511837	55.374	0.12704	55.143	55.032	55.159	-0.23087					5	3	2	0	0	0	0.023417	1	5928	5928		79.451	24.675	1	122090	+	+	5061	19525	2984	2999	6702	6702					-0.0200773156213927
AWSFRARPLF	10	Unmodified	_AWSFRARPLF_					0	0	0			REV__ENST00000559390.5_1_15:45021570-45021696:+|nuORF	REV__ENST00000559390.5_1_15:45021570-45021696:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8943786621094	3	417.564614	1249.67201	-0.82058	-0.00034265	-2.8162	-0.001176	-3.6368	-0.0015186	417.56336226341483	30.18	0.38524	30.002	29.697	30.083	-0.17818					13	8	2	0	0	0	0.03519	1	1902	1902		32.751	0	1	190880	+		5062	35118	2985	3000	6703	6703					0.057162221080716336
AWSLVVFLYVL	11	Unmodified	_AWSLVVFLYVL_					0	0	0			REV__ENST00000526995.5_1_11:36511020-36511152:-|nuORF	REV__ENST00000526995.5_1_11:36511020-36511152:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.25701904296875	3	437.256675	1308.7482	0.16506	7.2173E-05	1.6303	0.00071284	1.7953	0.00078501	437.2574121735408	95.731	2.1503	95.577	94.363	96.513	-0.15396					124	49	3	0	0	0	1.0499	1	11804	11804		25.126	0.058206	1	406300	+		5063	34465	2986	3001	6704	6704					0.10617181164843714
AWSPHQHGLLA	11	Unmodified	_AWSPHQHGLLA_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.8154907226562	2	608.814722	1215.61489	-0.59537	-0.00036247	3.9729	0.0024188	3.3775	0.0020563	608.8171045659574	99.725	1.2635	99.725	99.268	100.53	0					87	30	5	0	0	0	1.1045	1	12777	12777		2.9294	0	1	4514300			5064	2659	2987	3002	6705	6705					0.015707548317095643
AWSPLDGPLD	10	Unmodified	_AWSPLDGPLD_					0	0	0		ENST00000428369.5_3_5:131562901-131563021:-|nuORF	ENST00000428369.5_3_5:131562901-131563021:-|nuORF	ENST00000428369.5_3_5:131562901-131563021:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7630004882812	2	535.761289	1069.50803	-0.47215	-0.00025296	3.1489	0.001687	2.6767	0.0014341	535.7626480495901	49.404	0.75267	49.124	48.682	49.434	-0.27977					42	19	3	0	0	0	0.98754	1	4957	4957		47.657	5.1829	1	1083100			5065	14132	2988	3003	6706	6706					-0.023948401733377978
AWSQVPVNL	9	Unmodified	_AWSQVPVNL_					0	0	0		nc|ENSG00000103199|O60304-2|ZNF500;ENSG00000103199|ENST00000219478|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2718811035156	2	507.274367	1012.53418	-0.9483	-0.00048105	-3.8432	-0.0019496	-4.7915	-0.0024306	507.2725204061933	31.251	1.1894	31.251	30.92	32.109	0					70	28	4	0	0	0	0.17845	1	2069	2069		93.143	15.826	1	2917500			5066	2481	2989	3004	6707	6707					0.028414737887942465
AWTAARLYL	9	Unmodified	_AWTAARLYL_					0	0	0		nc|ENSG00000106018|P41587-2|VIPR2;ENSG00000106018|ENST00000262178|VIPR2	nc|ENSG00000106018|P41587-2|VIPR2	nc|ENSG00000106018|P41587-2|VIPR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7968139648438	2	532.798009	1063.58147	-0.51449	-0.00027412	-1.1548	-0.00061525	-1.6692	-0.00088937	532.7973521750105	100.6	0.70805	100.61	100.21	100.92	0.010117					39	16	3	0	0	0	0.62163	1	12854	12854		51.335	3.4199	1	973720			5067	2749	2990	3005	6708	6708					0.052217530597772566
AWVGPLPLLL	10	Unmodified	_AWVGPLPLLL_					0	0	0			REV__ENST00000567020.6_2_16:2551103-2551298:+|nuORF	REV__ENST00000567020.6_2_16:2551103-2551298:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8026123046875	2	539.836603	1077.65865	-0.7928	-0.00042798	0.91469	0.00049378	0.12189	6.58E-05	540.3386356388467	102.19	0.53108	102.19	101.95	102.48	0					20	11	2	0	0	0	0.03519	1	13081	13081		35.201	5.3592	1	137230	+		5068	35313	2991	3006	6709	6709					0.12292971276156095
AYAKEDKIML	10	Oxidation (M)	_AYAKEDKIM(Oxidation (M))L_		AYAKEDKIM(1)L		AYAKEDKIM(90)L	0	0	1		ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-2|MIA2	ENSG00000150527|ENST00000640607|MIA2	ENSG00000150527|ENST00000640607|MIA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	599.7831420898438	2	599.312832	1196.61111	-0.60504	-0.00036261	-2.6025	-0.0015597	-3.2075	-0.0019223	599.311140764132	82.758	0.64674	82.618	82.347	82.993	-0.14014					27	14	4	0	0	0	0.03519	1	9967	9967		90.37	13.596	1	206680			5069	6141	2992	3007	6710	6710		257			0.020669042229656043
AYDWPPTK	8	Unmodified	_AYDWPPTK_					0	0	0			REV__ENST00000519323.1_1_8:74964868-75011842:+|nuORF	REV__ENST00000519323.1_1_8:74964868-75011842:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2652893066406	2	489.239993	976.465432	-0.99125	-0.00048496	-4.3889	-0.0021472	-5.3802	-0.0026322	489.23632431299427	55.921	0.32639	55.706	55.489	55.815	-0.21551					11	8	2	0	0	0	0.027866	1	6003	6003		30.504	8.8013	1	160940	+		5070	34257	2993	3008	6711	6711					-0.02374190510909102
AYELHLSVK	9	Unmodified	_AYELHLSVK_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MSMS	OPSCC_40_ClassI_Rep-1	4	530.2931518554688	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.87	1	101.73	101.23	102.23	-0.13156								0	0	0	0.63578	1	12643	12643		34.173	0	1				5071	5151	2994	3009	6712	6712					0.049100294773325004
AYFYLHEAV	9	Unmodified	_AYFYLHEAV_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3082275390625	2	556.7742	1111.53385	-0.92051	-0.00051252	-2.0125	-0.0011205	-2.933	-0.001633	556.773192655925	61.01	0.48942	60.833	60.674	61.164	-0.1761					21	11	3	0	0	0	0.024541	1	6864	6864		19.36	9.0947	1	197240	+		5072	26206	2995	3010	6713	6713					-0.01745945931065762
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.73809814453125	2	447.737617	893.460681	0.28871	0.00012927	-0.3343	-0.00014968	-0.045594	-2.0414E-05	447.73738305616007	41.309	0.87013	41.309	41.051	41.921	0					67	24	4	0	0	0	0.23402	4	3700	3700;3710;3723;3736		134.81	36.181	1	6730700			5073	6694	2996	3011	6714;6715;6716;6717	6714					0.009689253463420755
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.7377624511719	2	447.737617	893.460681	0.20357	9.1144E-05	-0.20482	-9.1706E-05	-0.0012532	-5.6108E-07	447.7374204702321	41.471	0.94378	41.348	41.051	41.994	-0.12317					69	26	4	0	0	0	0.23402	4	3729	3706;3716;3729;3741		134.81	27.803	1	6467000			5074	6694	2996	3011	6718;6719;6720;6721	6720					0.009689253463420755
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.7375183105469	2	447.737617	893.460681	0.052639	2.3568E-05	-0.15088	-6.7556E-05	-0.098244	-4.3988E-05	447.7374766634542	41.491	0.80266	41.514	41.219	42.021	0.023006					66	22	4	0	0	0	0.27613	4	3673	3673;3684;3696;3709		122.18	23.547	1	6624600			5075	6694	2996	3011	6722;6723;6724;6725	6722					0.009689253463420755
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.73785400390625	2	447.737617	893.460681	-0.054908	-2.4585E-05	-0.069018	-3.0902E-05	-0.12393	-5.5486E-05	447.7374931174178	41.452	1.0019	41.316	41.022	42.024	-0.13553					68	26	4	0	0	0	0.30694	4	3664	3653;3664;3676;3692		110.12	21.477	1	6165800			5076	6694	2996	3011	6726;6727;6728;6729	6727					0.009689253463420755
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.73785400390625	2	447.737617	893.460681	-0.34856	-0.00015606	0.28864	0.00012924	-0.05992	-2.6828E-05	447.7376274221341	41.672	1.0398	41.444	41.006	42.046	-0.2278					73	27	4	0	0	0	0.27613	3	3700	3676;3687;3700		122.18	18.119	1	6095000			5077	6694	2996	3011	6730;6731;6732	6732					0.009689253463420755
AYGLSREV	8	Unmodified	_AYGLSREV_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.73760986328125	2	447.737617	893.460681	-0.17224	-7.712E-05	-0.041976	-1.8794E-05	-0.21422	-9.5914E-05	447.7375071280954	41.718	0.77446	41.488	41.157	41.932	-0.23029					55	20	4	0	0	0	0.27613	3	3676	3676;3687;3700		122.18	23.547	1	6559500			5078	6694	2996	3011	6733;6734;6735	6733					0.009689253463420755
AYGLYLKPIT	10	Unmodified	_AYGLYLKPIT_					0	0	0		nc|ENSG00000292343|Q02040-2|AKAP17A;nc|ENSG00000292343|Q02040-3|AKAP17A;ENSG00000197976|ENST00000313871|AKAP17A	nc|ENSG00000292343|Q02040-2|AKAP17A	nc|ENSG00000292343|Q02040-2|AKAP17A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.283935546875	2	569.828975	1137.6434	0.38917	0.00022176	-0.70496	-0.00040171	-0.31578	-0.00017994	569.8285820676807	81.276	0.57265	81.082	80.64	81.213	-0.19334					18	13	2	0	0	0	0.03519	1	9771	9771		17.365	0	1	126660			5079	10076	2997	3012	6736	6736					0.08008059688268077
AYGPGLVYGV	10	Unmodified	_AYGPGLVYGV_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.26861572265625	2	498.263468	994.512382	-1.1392	-0.00056761	1.4114	0.00070325	0.27223	0.00013564	498.2633341042209	35.9	0.66136	35.858	35.405	36.067	-0.042454					32	17	2	0	0	0	0.03519	1	2744	2744		35.201	2.3883	1	134110			5080	4979	2998	3013	6737	6737					0.014906690402312961
AYKGWIVKG	9	Unmodified	_AYKGWIVKG_					0	0	0			REV__ENSG00000164346|ENST00000610426|NSA2	REV__ENSG00000164346|ENST00000610426|NSA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7488708496094	2	511.295102	1020.57565	0.10932	5.5892E-05	-0.47192	-0.00024129	-0.36261	-0.0001854	511.2944912867567	32.741	1.2362	32.549	31.942	33.178	-0.19261					68	29	4	0	0	0	0.024541	1	2202	2202		17.365	3.2278	1	688000	+		5081	25744	2999	3014	6738	6738					0.06618654548128688
AYKRILPN	8	Unmodified	_AYKRILPN_					0	0	0			REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7906494140625	2	487.792727	973.5709	0.015184	7.4064E-06	-2.8093	-0.0013704	-2.7941	-0.001363	487.79133905580403	96.734	1.8267	96.573	95.483	97.31	-0.16106					82	41	4	0	0	0	1.0572	1	11900	11900		28.254	2.8041	1	1065200	+		5082	28115	3000	3015	6739	6739					0.0830577040536582
AYKYAKRMIL	10	Unmodified	_AYKYAKRMIL_					0	0	0			REV__C1GALT1C1|p.M121I|1|0.16|ENSG00000171155|chrX:120626804-120626804|C/G|missense_variant	REV__C1GALT1C1|p.M121I|1|0.16|ENSG00000171155|chrX:120626804-120626804|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	419.57769775390625	3	419.577643	1255.7111	-0.28333	-0.00011888	0.060323	2.531E-05	-0.22301	-9.3568E-05	419.5776916553497	21.419	1.1523	21.329	21.01	22.162	-0.090092					69	23	5	0	0	0	1.1266	1	640	640		29.17	4.6509	1	975880	+		5083	19228	3001	3016	6740	6740					0.09347186347440584
AYLAGWVLE	9	Unmodified	_AYLAGWVLE_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.31634521484375	2	511.271293	1020.52803	-0.42295	-0.00021624	0.18803	9.6137E-05	-0.23492	-0.00012011	511.26840810831027	22.192	0.76104	22.117	21.745	22.506	-0.075294					39	15	4	0	0	0	0.024535	1	782	782		18.324	0	1	61877			5084	5055	3002	3017	6741	6741					0.018589555572589234
AYLMQKLN	8	Unmodified	_AYLMQKLN_					0	0	0		nc|ENSG00000139318|Q16828-2|DUSP6;ENSG00000139318|ENST00000279488|DUSP6	nc|ENSG00000139318|Q16828-2|DUSP6	nc|ENSG00000139318|Q16828-2|DUSP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7810363769531	2	490.76532	979.516088	-0.54214	-0.00026606	1.8713	0.00091839	1.3292	0.00065233	490.76700417100767	62.524	0.20406	62.587	62.524	62.728	0.062767					5	4	2	0	0	0	0.027866	1	7190	7190		42.474	1.9018	1	77422			5085	5323	3003	3018	6742	6742					0.025510155424399272
AYLMVHQKT	9	Unmodified	_AYLMVHQKT_					0	0	0		nc|ENSG00000175395|P17030-2|ZNF25;ENSG00000175395|ENST00000302609|ZNF25	nc|ENSG00000175395|P17030-2|ZNF25	nc|ENSG00000175395|P17030-2|ZNF25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.810791015625	2	545.789327	1089.5641	-0.15779	-8.6122E-05	-0.26628	-0.00014533	-0.42407	-0.00023145	545.7894280329657	70.029	0.37556	69.779	69.566	69.942	-0.25063					12	8	2	0	0	0	0.024511	1	8163	8163		32.812	1.2826	1	63028			5086	8556	3004	3019	6743	6743					0.022900894624854118
AYLPFFHAV	9	Unmodified	_AYLPFFHAV_					0	0	0			REV__ENSG00000126266|ENST00000246553|FFAR1	REV__ENSG00000126266|ENST00000246553|FFAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.781005859375	2	532.781828	1063.5491	-0.68908	-0.00036713	-0.10803	-5.7558E-05	-0.79711	-0.00042469	532.781667172757	57.209	1.3623	57.041	56.323	57.686	-0.1672					90	35	3	0	0	0	0.80342	1	6266	6266		39.021	1.993	1	6750600	+		5087	22889	3005	3020	6744	6744					0.01986965656783468
AYLQISSLK	9	Unmodified	_AYLQISSLK_					0	0	0		nc|ENSG00000211979|A0A0B4J1V7|IGHV7-81	nc|ENSG00000211979|A0A0B4J1V7|IGHV7-81	nc|ENSG00000211979|A0A0B4J1V7|IGHV7-81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.31634521484375	2	511.797675	1021.5808	-0.43247	-0.00022134	-2.4937	-0.0012762	-2.9261	-0.0014976	511.79620384271476	21.908	0.85457	21.833	21.651	22.506	-0.075296					50	17	4	0	0	0	0.024374	1	782	782		40.778	0	1	506320			5088	18707	3006	3021	6745	6745					0.07086913620094037
AYMFIIASYFI	11	Unmodified	_AYMFIIASYFI_					0	0	0			REV__ENSG00000221813|ENST00000641698|OR6B1	REV__ENSG00000221813|ENST00000641698|OR6B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.8964538574219	3	446.898271	1337.67298	-0.79573	-0.00035561	-3.5986	-0.0016082	-4.3944	-0.0019638	446.89667757152597	24.204	0.97756	24.157	23.869	24.847	-0.047146					60	21	4	0	0	0	1.0281	1	1027	1027		30.569	1.9921	1	3326000	+		5089	28828	3007	3022	6746	6746					0.01765255642089869
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.7813110351562	2	566.78169	1131.54883	-0.72165	-0.00040902	0.58888	0.00033377	-0.13276	-7.5249E-05	566.781880411277	78.455	1.0379	78.455	78.122	79.16	0					90	24	6	0	0	0	0.096521	5	9710	9700;9710;9722;9734;9749		111.65	56.144	1	5329800			5090	2863	3008	3023	6747;6748;6749;6750;6751	6748					-0.011684988537126628
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.7813720703125	2	566.78169	1131.54883	0.13909	7.8832E-05	-0.091956	-5.2119E-05	0.04713	2.6713E-05	566.7815304063514	78.636	1.3677	78.444	78.096	79.464	-0.1921					95	32	5	0	0	0	0.06122	4	9689	9689;9699;9711;9723		124.59	49.325	1	5899200			5091	2863	3008	3023	6752;6753;6754;6755	6752					-0.011684988537126628
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.7815551757812	2	566.78169	1131.54883	-1.0156	-0.00057563	0.93592	0.00053046	-0.079686	-4.5164E-05	566.782093707244	78.484	1.3177	78.5	78.155	79.472	0.015907					89	31	5	0	0	0	0.039744	4	9635	9625;9635;9647;9661		133.81	68.009	1	6246800			5092	2863	3008	3023	6756;6757;6758;6759	6757					-0.011684988537126628
AYPKRSAL	8	Unmodified	_AYPKRSAL_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.2245178222656	2	453.263802	904.513051	-0.71238	-0.00032289	0.97306	0.00044105	0.26068	0.00011816	453.2641508539235	38.693	0.35785	38.472	38.221	38.579	-0.22148					12	8	2	0	0	0	0.027866	1	3175	3175		25.45	12.491	1	63776			5093	5546	3009	3024	6760	6760					0.05697508479943281
AYQMCQDAE	9	Unmodified	_AYQMCQDAE_					0	0	0		nc|ENSG00000117322|P20023-2|CR2;nc|ENSG00000117322|P20023|CR2;nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2	nc|ENSG00000117322|P20023-2|CR2	nc|ENSG00000117322|P20023-2|CR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8200073242188	2	529.699517	1057.38448	-0.012713	-6.734E-06	3.1983	0.0016941	3.1856	0.0016874	529.7011705105076	19.731	0.39387	19.571	19.331	19.725	-0.1608					12	7	2	0	0	0	0.024457	1	456	456		45.952	25.005	1	9836.8			5094	3622	3010	3025	6761	6761					-0.14191582607645614
AYRRRWRRLTV	11	Unmodified	_AYRRRWRRLTV_					0	0	0		sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.30718994140625	3	511.639287	1531.89603	0.28858	0.00014765	2.1256	0.0010875	2.4141	0.0012352	511.64020289467214	103.16	0.61688	103.03	102.79	103.4	-0.12724					21	14	2	0	0	0	0.024879	1	12833	12833		8.7993	2.4784	1	128250			5095	37947	3011	3026	6762	6762					0.15135930262022157
AYSKEGLGL	9	Unmodified	_AYSKEGLGL_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.25579833984375	2	469.2531	936.491647	0.78166	0.0003668	-0.67633	-0.00031737	0.10533	4.9427E-05	469.2526722336673	76.895	0.7887	76.909	76.572	77.361	0.013504					30	18	2	0	0	0	0.80658	1	9427	9427		38.806	1.647	1	871270			5096	1860	3012	3027	6763	6763					0.0208607866057946
AYSNLFFIS	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AYSNLFFIS_					1	0	0			REV__ENST00000249647.7_1_15:42823724-42823898:+|nuORF	REV__ENST00000249647.7_1_15:42823724-42823898:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.270751953125	2	552.274032	1102.53351	0.18695	0.00010325	-1.9466	-0.001075	-1.7596	-0.00097179	552.2712799286783	51.129	1.0605	50.853	50.552	51.613	-0.27643					96	27	7	0	0	0	0.15029	1	5237	5237		99.375	9.0051	1	4750300	+		5097	29492	3013	3028	6764	6764					-0.013653656508950007
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2508544921875	2	559.251089	1116.48762	-0.32676	-0.00018274	-0.034678	-1.9393E-05	-0.36144	-0.00020213	559.2510126338635	42.953	0.61852	42.953	42.642	43.261	0					59	16	5	0	0	0	0.015901	4	3992	3979;3992;4005;4018		157.33	77.878	1	8798600			5098	1253	3014	3029	6765;6766;6767;6768	6766					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2511596679688	2	559.251089	1116.48762	-0.57652	-0.00032242	1.2585	0.00070379	0.68193	0.00038137	559.2512614107392	43.201	0.90761	43.062	42.773	43.681	-0.13929					60	24	5	0	0	0	0.027092	3	4004	4004;4015;4027		143.89	59.374	1	8089500			5099	1253	3014	3029	6769;6770;6771	6769					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2512817382812	2	559.251089	1116.48762	0.41084	0.00022976	-0.52462	-0.00029339	-0.11378	-6.363E-05	559.2506267467983	43.161	0.54734	43.192	42.865	43.413	0.030827					45	14	5	0	0	0	0.027092	3	3966	3956;3966;3978		143.89	51.559	1	7957500			5100	1253	3014	3029	6772;6773;6774	6773					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.251089	1116.48762	-0.21112	-0.00011807	-0.008288	-4.6351E-06	-0.21941	-0.00012271	559.2510322401004	43.244	0.46395	43.132	42.891	43.355	-0.11253	0.007045	-6.1724E-05	NaN	157.33	38	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370900			5101	1253	3014	3029							-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.251089	1116.48762	-0.54643	-0.00030559	0.21183	0.00011846	-0.3346	-0.00018713	559.2511073826477	43.407	0.46603	43.17	42.953	43.419	-0.23737	0.045314	0.00018447	NaN	157.33	39	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1305800			5102	1253	3014	3029							-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.251089	1116.48762	-1.0487	-0.0005865	0.61393	0.00034334	-0.43479	-0.00024316	559.2513421126745	43.465	0.49448	43.239	42.989	43.484	-0.22597	0.11465	0.00063423	NaN	157.33	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1310800			5103	1253	3014	3029							-0.06596010833141008
AYVACLDP	8	Carbamidomethyl (C)	_AYVAC(Carbamidomethyl (C))LDP_	AYVAC(1)LDP		AYVAC(75)LDP		0	1	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7146911621094	2	454.712753	907.410954	0.096829	4.4029E-05	4.4082	0.0020045	4.5051	0.0020485	454.71461241442455	22.735	0.8207	22.735	22.385	23.206	0					43	17	4	0	0	0	0.61897	1	836	836		74.517	6.0319	1	658950	+		5104	22290	3015	3030	6775	6775	292				-0.046455256539843504
AYVACLDP	8	Carbamidomethyl (C)	_AYVAC(Carbamidomethyl (C))LDP_					0	1	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	454.712753	907.410954	0.096829	4.4029E-05	4.4082	0.0020045	4.5051	0.0020485	454.71461241442455	22.735	0.8207	22.735	22.385	23.206	0	-0.01572	-9.3159E-05	NaN	74.517	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658950	+		5105	22290	3015	3030			292				-0.046455256539843504
AYVACLDP	8	Carbamidomethyl (C)	_AYVAC(Carbamidomethyl (C))LDP_					0	1	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	454.712753	907.410954	-0.12717	-5.7825E-05	4.5729	0.0020794	4.4458	0.0020215	454.71466838126304	22.792	0.67891	22.717	22.458	23.137	-0.075296	-0.03363	5.6623E-05	NaN	74.517	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836750	+		5106	22290	3015	3030			292				-0.046455256539843504
AYVACLDP	8	Carbamidomethyl (C)	_AYVAC(Carbamidomethyl (C))LDP_					0	1	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	454.712753	907.410954	-0.65245	-0.00029668	5.0319	0.0022881	4.3795	0.0019914	454.71487558440253	22.636	0.69899	22.71	22.413	23.112	0.073954	-0.040691	0.00047406	NaN	74.517	41	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817270	+		5107	22290	3015	3030			292				-0.046455256539843504
AYVACLDP	8	Carbamidomethyl (C)	_AYVAC(Carbamidomethyl (C))LDP_					0	1	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	454.712753	907.410954	-0.47728	-0.00021702	5.0479	0.0022953	4.5706	0.0020783	454.71494150592224	23.009	0.27735	22.824	22.646	22.923	-0.18539	0.0734	0.00048858	NaN	74.517	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25912	+		5108	22290	3015	3030			292				-0.046455256539843504
AYVACLDP	8	Carbamidomethyl (C)	_AYVAC(Carbamidomethyl (C))LDP_					0	1	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	454.712753	907.410954	1.1847	0.00053871	2.4478	0.0011131	3.6326	0.0016518	454.7138590893566	22.958	0.32447	22.767	22.664	22.988	-0.19117	0.016642	-0.001876	NaN	74.517	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21464	+		5109	22290	3015	3030			292				-0.046455256539843504
AYVLFIYL	8	Unmodified	_AYVLFIYL_					0	0	0			REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2904357910156	2	501.288954	1000.56336	0.7613	0.00038163	2.2248	0.0011153	2.9861	0.0014969	501.28990286512953	98.13	1.7563	98.127	97.769	99.525	-0.0020752					83	40	4	0	0	0	1.0241	1	12454	12454		33.493	5.2387	1	1679000	+		5110	27326	3016	3031	6776	6776					0.06309618085072088
AYVLNYYCTGK	11	Unmodified	_AYVLNYYCTGK_					0	0	0		KCNC4|p.R111C|1|0.3|ENSG00000116396|chr1:110211830-110211830|C/T|missense_variant	KCNC4|p.R111C|1|0.3|ENSG00000116396|chr1:110211830-110211830|C/T|missense_variant	KCNC4|p.R111C|1|0.3|ENSG00000116396|chr1:110211830-110211830|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.8095092773438	2	647.810456	1293.60636	-2.445	-0.0015839	3.4452	0.0022318	1.0001	0.0006479	647.8127220537594	62.792	1.6359	62.571	62.237	63.873	-0.22097					94	43	4	0	0	0	0.51994	1	7054	7054		75.043	2.8001	1	14041000			5111	17785	3017	3032	6777	6777					-0.028699799198193432
AYVLNYYCTGK	11	Unmodified	_AYVLNYYCTGK_					0	0	0		KCNC4|p.R111C|1|0.3|ENSG00000116396|chr1:110211830-110211830|C/T|missense_variant	KCNC4|p.R111C|1|0.3|ENSG00000116396|chr1:110211830-110211830|C/T|missense_variant	KCNC4|p.R111C|1|0.3|ENSG00000116396|chr1:110211830-110211830|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	647.810456	1293.60636	0.1116	7.2295E-05	-0.88196	-0.00057134	-0.77036	-0.00049905	647.8099404029955	62.817	0.20237	62.578	62.492	62.695	-0.23926	-0.010178	-0.0039317	NaN	75.043	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117540			5112	17785	3017	3032							-0.028699799198193432
AYVNRLDLL	9	Unmodified	_AYVNRLDLL_					0	0	0		nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	nc|ENSG00000139132|Q96M96|FGD4	nc|ENSG00000139132|Q96M96|FGD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.27783203125	2	538.808574	1075.60259	0.42845	0.00023085	2.6368	0.0014207	3.0653	0.0016516	538.8099791292951	84.644	0.42085	84.485	84.236	84.657	-0.15868					18	9	3	0	0	0	0.024427	1	10217	10217		34.173	0	1	124070			5113	5300	3018	3033	6778	6778					0.06781718368665679
AYYKVQSEL	9	Unmodified	_AYYKVQSEL_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2446899414062	2	550.784764	1099.55498	-0.6781	-0.00037349	-1.8791	-0.001035	-2.5572	-0.0014085	550.7836503461565	78.23	1.241	78.246	77.948	79.189	0.015907					59	29	3	0	0	0	0.024427	1	9596	9596		34.173	0	1	1302200	+		5114	36612	3019	3034	6779	6779					0.009180193778320245
CAAPTKSSSSI	11	Unmodified	_CAAPTKSSSSI_					0	0	0		chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|1	chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|1	chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7896118164062	2	526.258056	1050.50156	-0.60133	-0.00031646	-4.3067	-0.0022664	-4.908	-0.0025829	526.2557634842011	76.139	0.90998	75.866	75.423	76.333	-0.27266					46	22	4	0	0	0	0.02475	1	9051	9051		35.152	7.2698	1	440810			5115	408	3020	3035	6780	6780					-0.02167101396344151
CAGLFAGGVLL	11	Unmodified	_CAGLFAGGVLL_					0	0	0			REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2848205566406	2	510.78097	1019.54739	0.051056	2.6079E-05	2.1935	0.0011204	2.2446	0.0011465	510.7832249645329	86.992	1.6165	86.992	86.386	88.003	0					78	38	5	0	0	0	0.75705	1	10932	10932		60.294	2.064	1	890020	+		5116	22132	3021	3036	6781	6781					0.038395885765453386
CALYVVVSI	9	Unmodified	_CALYVVVSI_					0	0	0		nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-6|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB;ENSG00000073605|ENST00000418519|GSDMB;nc|ENSG00000073605|Q8TAX9-5|GSDMB	nc|ENSG00000073605|Q8TAX9-2|GSDMB	nc|ENSG00000073605|Q8TAX9-2|GSDMB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.8003234863281	2	483.770071	965.52559	1.0273	0.00049696	1.0844	0.00052458	2.1116	0.0010215	483.77049869152955	20.147	0.43204	19.95	19.606	20.038	-0.19751					13	8	2	0	0	0	0.024293	1	475	475		52.299	6.3472	1	23112			5117	1511	3022	3037	6782	6782					0.041447838279623284
CANVKQWK	8	Unmodified	_CANVKQWK_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2746887207031	2	488.755287	975.496021	-0.49873	-0.00024376	-3.7397	-0.0018278	-4.2384	-0.0020715	488.7532820454677	20.589	1.1611	20.485	20.227	21.388	-0.10477					34	23	2	0	0	0	0.027866	1	611	611		26.796	6.3143	1	144180			5118	6362	3023	3038	6783	6783					0.00729264602477997
CASVSLLGGL	10	Unmodified	_CASVSLLGGL_					0	0	0		ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2511901855469	2	460.249503	918.484453	0.5422	0.00024955	-0.22862	-0.00010522	0.31358	0.00014433	460.2492379081391	67.362	1.4083	67.386	66.601	68.009	0.023911					86	34	3	0	0	0	0.52589	1	7965	7965		85.359	3.0545	1	867620			5119	10007	3024	3039	6784	6784					0.02195022788521328
CATVGKRCT	9	Unmodified	_CATVGKRCT_					0	0	0			REV__ENSG00000128311|ENST00000249042|TST	REV__ENSG00000128311|ENST00000249042|TST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.7328186035156	2	469.730954	937.447356	-0.54359	-0.00025534	4.0301	0.001893	3.4865	0.0016377	469.73269547168024	27.772	0.73259	27.615	27.185	27.918	-0.15664					50	17	4	0	0	0	0.54416	2	1524	1524;1537		56.434	3.0823	1	2259900	+		5120	22981	3025	3040	6785;6786	6785					-0.023869720289326324
CAVLLLPP	8	Unmodified	_CAVLLLPP_					0	0	0		ENST00000372648.9_1_9:131570248-131570605:+|nuORF	ENST00000372648.9_1_9:131570248-131570605:+|nuORF	ENST00000372648.9_1_9:131570248-131570605:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.268798828125	2	413.248775	824.482997	-0.035941	-1.4852E-05	-2.3144	-0.00095644	-2.3504	-0.00097129	413.2471364559373	28.241	0.24685	28.322	28.124	28.37	0.080812					9	5	2	0	0	0	0.027866	1	1582	1582		24.504	7.799	1	27471			5121	13048	3026	3041	6787	6787					0.06373433490375646
CCCHAPCC	8	Unmodified	_CCCHAPCC_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2403869628906	2	420.109915	838.205277	1.0023	0.00042107	1.5528	0.00065234	2.5551	0.0010734	420.11039688177084	37.303	0.11021	37.303	37.233	37.343	0					4	2	2	0	0	0	0.027866	1	3029	3029		5.0869	3.4679	1	17577	+		5122	24383	3027	3042	6788	6788					-0.22029784972573907
CCDCHSPS	8	Unmodified	_CCDCHSPS_					0	0	0			REV__ENSG00000183775|ENST00000512467|KCTD16	REV__ENSG00000183775|ENST00000512467|KCTD16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2350158691406	2	426.127673	850.240794	-1.0266	-0.00043747	0.19507	8.3125E-05	-0.83154	-0.00035434	426.1267069891871	28.084	0.38809	28.084	27.844	28.232	0					11	9	2	0	0	0	0.027866	1	1625	1625		8.2313	0	1	36092	+		5123	27608	3028	3043	6789	6789					-0.19031707919543805
CCGRGYNP	8	Unmodified	_CCGRGYNP_					0	0	0		ENSG00000085741|ENST00000322563|WNT11	ENSG00000085741|ENST00000322563|WNT11	ENSG00000085741|ENST00000322563|WNT11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.79541015625	2	435.173272	868.331992	4.4542	0.0019384	-4.3811	-0.0019066	0.073076	3.1801E-05	435.1712976310629	17.795	0.49511	17.545	17.322	17.817	-0.25049					13	9	2	0	0	0	0.027866	1	226	226		12.959	0	1	18571			5124	1799	3029	3044	6790	6790					-0.10744076159915039
CCLLQVDGE	9	Unmodified	_CCLLQVDGE_					0	0	0		ENST00000600252.5_1_19:15219832-15221230:+|nuORF;nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	ENST00000600252.5_1_19:15219832-15221230:+|nuORF	ENST00000600252.5_1_19:15219832-15221230:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2375183105469	2	490.214803	978.415053	-0.37587	-0.00018426	-1.7379	-0.00085196	-2.1138	-0.0010362	490.2118972652017	35.322	0.19344	35.11	35	35.193	-0.21246					8	4	3	0	0	0	0.023842	1	2669	2669		87.696	13.18	1	34434			5125	17499	3030	3045	6791	6791					-0.07501804222579267
CCLPPLSVS	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))C(Carbamidomethyl (C))LPPLSVS_	C(1)C(1)LPPLSVS		C(71)C(71)LPPLSVS		0	2	0		ENST00000592414.1_1_19:3055403-3056603:-|nuORF	ENST00000592414.1_1_19:3055403-3056603:-|nuORF	ENST00000592414.1_1_19:3055403-3056603:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7479248046875	2	516.74627	1031.47799	0.0088777	4.5875E-06	2.9119	0.0015047	2.9207	0.0015093	516.7476483690072	63.629	1.0064	63.436	63.109	64.115	-0.19243					75	25	4	0	0	0	0.33184	1	7206	7206		71.378	10.406	1	4368200			5126	17371	3031	3046	6792	6792	230;231				-0.03649238434536528
CDAEPMNE	8	Unmodified	_CDAEPMNE_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.6629333496094	2	454.659861	907.305168	-0.33582	-0.00015268	3.3399	0.0015185	3.0041	0.0013658	454.66278773199485	68.652	2.5922	68.39	67.573	70.165	-0.26165					185	62	5	0	0	0	1.0365	3	7980	7942;7954;7980		31.53	2.4321	1	1315700	+		5127	24419	3032	3047	6793;6794;6795	6795					-0.15219229561751035
CDAEPMNE	8	Unmodified	_CDAEPMNE_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.6628723144531	2	454.659861	907.305168	0.29873	0.00013582	2.7325	0.0012424	3.0312	0.0013782	454.6625127910412	68.669	1.8667	68.426	67.707	69.574	-0.24277					185	45	5	0	0	0	1.0574	1	7956	7956		26.693	2.4902	1	1459100	+		5128	24419	3032	3047	6796	6796					-0.15219229561751035
CDAEPMNE	8	Unmodified	_CDAEPMNE_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.66278076171875	2	454.659861	907.305168	0.20904	9.5041E-05	2.9385	0.001336	3.1475	0.0014311	454.6625655336982	68.656	1.7912	68.426	67.715	69.506	-0.23048					156	43	5	0	0	0	1.0198	1	7938	7938		34.173	2.2177	1	1243300	+		5129	24419	3032	3047	6797	6797					-0.15219229561751035
CDAIMRYISQ	10	Unmodified	_CDAIMRYISQ_					0	0	0		EDEM3|p.Y319C|1|0.2|ENSG00000116406|chr1:184719564-184719564|T/C|missense_variant	EDEM3|p.Y319C|1|0.2|ENSG00000116406|chr1:184719564-184719564|T/C|missense_variant	EDEM3|p.Y319C|1|0.2|ENSG00000116406|chr1:184719564-184719564|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	600.3009033203125	2	600.281008	1198.54746	-0.64812	-0.00038905	-1.0318	-0.00061937	-1.6799	-0.0010084	600.2794941804882	60.729	0.35555	60.523	60.378	60.734	-0.20599					12	8	2	0	0	0	0.03519	1	6761	6761		29.17	0	1	177530			5130	681	3033	3048	6798	6798					-0.0438677948577606
CDCLFMQR	8	Unmodified	_CDCLFMQR_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000592249.5_1_18:56620439-56651695:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.27764892578125	2	508.21154	1014.40853	-0.8241	-0.00041882	-3.0281	-0.0015389	-3.8522	-0.0019577	508.2101063082189	55.403	0.52427	55.257	55.022	55.546	-0.14609					18	14	2	0	0	0	0.027866	1	5911	5911		38.806	0	1	161480			5131	1533	3034	3049	6799	6799					-0.09810020654936125
CDCPLCSD	8	Unmodified	_CDCPLCSD_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.26202392578125	2	428.137707	854.26086	-0.29052	-0.00012438	0.37458	0.00016037	0.084061	3.5989E-05	428.13935243544233	90.25	0.1591	90.125	90.049	90.208	-0.12512					7	3	3	0	0	0	0.027866	1	11061	11061		12.959	0.75233	1	47443	+		5132	19879	3035	3050	6800	6800					-0.17209956979604613
CDCVHITLT	9	Unmodified	_CDCVHITLT_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.8037414550781	2	502.73062	1003.44669	-0.13973	-7.0247E-05	-2.3872	-0.0012001	-2.527	-0.0012704	502.728926930301	57.519	0.30042	57.519	57.266	57.567	0					9	7	2	0	0	0	0.024381	1	6466	6466		21.96	1.1227	1	95263	+		5133	20457	3036	3051	6801	6801					-0.05489811468635253
CDDEGDCV	8	Unmodified	_CDDEGDCV_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B;REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2622985839844	2	428.128393	854.242233	-0.538	-0.00023033	4.1137	0.0017612	3.5757	0.0015309	428.12833017948736	90.112	0.39989	89.957	89.781	90.181	-0.1552					15	9	3	0	0	0	0.027866	1	11011	11011		20.482	11.66	1	82234	+		5134	20681;26284	3037	3052	6802	6802					-0.19071795349793774
CDDEGDCV	8	Unmodified	_CDDEGDCV_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B;REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2621765136719	2	428.128393	854.242233	0.60355	0.0002584	-2.4473	-0.0010478	-1.8438	-0.00078938	428.1281930780424	90.274	0.32124	90.136	89.835	90.156	-0.13824					9	7	2	0	0	0	0.027866	1	11016	11016		20.482	1.1219	1	79893	+		5135	20681;26284	3037	3052	6803	6803					-0.19071795349793774
CDECNEPPN	9	Unmodified	_CDECNEPPN_					0	0	0			REV__ENSG00000000005|ENST00000373031|TNMD	REV__ENSG00000000005|ENST00000373031|TNMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.8443603515625	2	510.673499	1019.33245	-0.69764	-0.00035626	3.6983	0.0018886	3.0007	0.0015324	511.1775967653604	76.099	0.23215	76.099	75.918	76.15	0					6	5	2	0	0	0	0.024523	1	9358	9358		37.159	8.9048	1	123670	+		5136	19751	3038	3053	6804	6804					-0.17644746021380797
CDEDEAHL	8	Unmodified	_CDEDEAHL_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23;ENST00000506400.1_1_5:64906824-64920129:-|nuORF	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.263427734375	2	466.176732	930.338911	-0.85274	-0.00039753	-1.8593	-0.00086674	-2.712	-0.0012643	466.1761405896577	37.869	0.10877	37.648	37.577	37.686	-0.22148					4	2	2	0	0	0	0.027866	1	3069	3069		42.474	0	1	100540			5137	3309	3039	3054	6805	6805					-0.12904484798343674
CDEWHCNTEY	10	Unmodified	_CDEWHCNTEY_					0	0	0			REV__nc|ENSG00000074047|P10070-4|GLI2	REV__nc|ENSG00000074047|P10070-4|GLI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.25469970703125	3	433.818351	1298.43322	0.55616	0.00024127	3.5107	0.001523	4.0669	0.0017643	433.8195242098571	102.82	0.34149	102.82	102.64	102.98	-0.0046082					12	8	2	0	0	0	0.03519	1	13108	13108		17.468	7.7624	1	140560	+		5138	20517	3040	3055	6806	6806					-0.2040571403854301
CDFPKPAF	8	Unmodified	_CDFPKPAF_					0	0	0		ENST00000436697.2_2_15:55610011-55610050:-|nuORF	ENST00000436697.2_2_15:55610011-55610050:-|nuORF	ENST00000436697.2_2_15:55610011-55610050:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.7216491699219	2	462.717839	923.421125	4.8672	0.0022522	2.9976	0.0013871	7.8649	0.0036392	462.71906154319703	17.302	0.25161	17.051	16.928	17.179	-0.25049					8	4	2	0	0	0	0.78609	1	145	145		60.294	10.269	1	63130			5139	14281	3041	3056	6807	6807					-0.04364917928751311
CDFPKPAF	8	Unmodified	_CDFPKPAF_					0	0	0		ENST00000436697.2_2_15:55610011-55610050:-|nuORF	ENST00000436697.2_2_15:55610011-55610050:-|nuORF	ENST00000436697.2_2_15:55610011-55610050:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.717839	923.421125	1.4003	0.00064794	6.0925	0.0028191	7.4928	0.003467	462.7205634214711	17.324	0.30217	17.17	16.957	17.259	-0.15403	0.059347	4.2993E-05	NaN	60.294	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29775			5140	14281	3041	3056							-0.04364917928751311
CDFPKPAF	8	Unmodified	_CDFPKPAF_					0	0	0		ENST00000436697.2_2_15:55610011-55610050:-|nuORF	ENST00000436697.2_2_15:55610011-55610050:-|nuORF	ENST00000436697.2_2_15:55610011-55610050:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.717839	923.421125	-0.20099	-9.3003E-05	8.2456	0.0038154	8.0446	0.0037224	462.72156089893264	17.318	0.35266	17.111	16.913	17.265	-0.20669	0.00040282	0.0020356	NaN	60.294	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17036			5141	14281	3041	3056							-0.04364917928751311
CDFRGSQLQIH	11	Unmodified	_CDFRGSQLQIH_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.21905517578125	3	435.211911	1302.6139	-0.35826	-0.00015592	-3.631	-0.0015803	-3.9893	-0.0017362	435.20882408050903	30.357	0.37331	30.365	30.123	30.496	0.0086689					14	8	3	0	0	0	0.024727	1	1936	1936		29.551	0	1	31982	+		5142	24334	3042	3057	6808	6808					-0.02529827599505552
CDGEGVLKFA	10	Unmodified	_CDGEGVLKFA_					0	0	0		ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	ENSG00000111678|ENST00000229281|C12orf57	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7703857421875	2	519.749867	1037.48518	-1.2867	-0.00066878	3.6121	0.0018774	2.3254	0.0012086	519.7519110470491	35.676	0.35551	35.676	35.531	35.886	0					10	8	2	0	0	0	0.03519	1	2793	2793		58.782	12.83	1	44627			5143	3136	3043	3058	6809	6809					-0.03206182562462345
CDGILWLYV	9	Unmodified	_CDGILWLYV_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|288|3|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|288|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8033447265625	2	541.272978	1080.5314	0.06031	3.2644E-05	-0.54092	-0.00029279	-0.48061	-0.00026014	541.2724808661293	96.324	0.59245	96.331	96.068	96.66	0.0065079					32	13	3	0	0	0	0.024466	1	12253	12253		42.474	3.6683	1	205140	+		5144	36124	3044	3059	6810	6810					-0.005641176603603526
CDGMQYIAI	9	Unmodified	_CDGMQYIAI_					0	0	0			REV__nc|ENSG00000164494|Q86YH6-2|PDSS2	REV__nc|ENSG00000164494|Q86YH6-2|PDSS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.30816650390625	2	507.225171	1012.43579	-0.9373	-0.00047542	1.438	0.0007294	0.50073	0.00025398	507.2258793851878	43.331	0.36305	43.105	42.912	43.275	-0.22597					16	9	2	0	0	0	0.024319	1	3965	3965		56.721	8.8055	1	109220	+		5145	36868	3045	3060	6811	6811					-0.06993213842929435
CDGTPVLEPQ	10	Unmodified	_CDGTPVLEPQ_					0	0	0		ENST00000336156.9_1_22:45592445-45593009:-|nuORF	ENST00000336156.9_1_22:45592445-45593009:-|nuORF	ENST00000336156.9_1_22:45592445-45593009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3023071289062	2	529.744782	1057.47501	-0.58741	-0.00031118	0.79805	0.00042276	0.21065	0.00011159	529.744640041359	30.114	0.42597	29.87	29.696	30.122	-0.24415					13	9	2	0	0	0	0.03519	1	1928	1928		14.137	0	1	48135			5146	12402	3046	3061	6812	6812					-0.05142790287709431
CDHQLARWRL	10	Unmodified	_CDHQLARWRL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2559509277344	3	433.224263	1296.65096	0.54962	0.00023811	-0.56117	-0.00024311	-0.011556	-5.0065E-06	433.22365001331485	102.89	0.34529	102.88	102.59	102.94	-0.0046005					13	8	2	0	0	0	0.03519	1	13073	13073		20.03	0	1	1034700			5147	8772	3047	3062	6813	6813					0.014498887368972646
CDIPPLLLL	9	Unmodified	_CDIPPLLLL_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.2556457519531	2	498.793546	995.57254	0.32184	0.00016053	3.1292	0.0015608	3.4511	0.0017214	498.79369725737314	71.511	0.92616	71.305	70.571	71.497	-0.20614					30	21	3	0	0	0	0.024412	1	8351	8351		31.955	0	1	163210			5148	9641	3048	3063	6814	6814					0.07457643379120782
CDKKKHTMA	9	Unmodified	_CDKKKHTMA_					0	0	0			REV__ENST00000521190.5_1_5:159840839-159846079:-|nuORF	REV__ENST00000521190.5_1_5:159840839-159846079:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2669067382812	2	531.265161	1060.51577	-0.091268	-4.8488E-05	3.8436	0.0020419	3.7523	0.0019935	531.2670006889718	20.541	0.68412	20.373	20.147	20.832	-0.16774					28	13	4	0	0	0	0.78823	1	568	568		40.058	2.2467	1	690230	+		5149	25776	3049	3064	6815	6815					-0.012067274490618729
CDKRTLQNDL	10	Unmodified	_CDKRTLQNDL_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9;nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5364685058594	3	402.536283	1204.58702	-0.7007	-0.00028206	1.0605	0.00042688	0.35977	0.00014482	402.5365031423494	34.967	4.3177	34.78	32.897	37.215	-0.18675					221	111	5	0	0	0	0.75651	1	2575	2575		63.534	19.883	1	1468600			5150	6572	3050	3065	6816	6816					-0.007089362106853514
CDLGVSSLLI	10	Unmodified	_CDLGVSSLLI_					0	0	0			REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2743835449219	2	510.275718	1018.53688	0.84661	0.000432	-3.7806	-0.0019292	-2.934	-0.0014972	510.2735046597124	70.94	0.97894	70.647	70.368	71.347	-0.29291					50	23	4	0	0	0	0.82838	1	8553	8553		58.782	7.4465	1	1448500	+		5151	29362	3051	3066	6817	6817					0.028355611314509588
CDLLTKNHG	9	Unmodified	_CDLLTKNHG_					0	0	0		ENST00000380121.7_1_13:33010521-33020605:-|nuORF;nc|ENSG00000244754|Q92802-3|N4BP2L2	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29248046875	2	500.747659	999.480765	0.20694	0.00010362	-0.73826	-0.00036968	-0.53132	-0.00026606	500.74713400749226	56.889	0.58264	56.687	56.482	57.064	-0.20208					22	15	2	0	0	0	0.024457	1	6244	6244		29.15	3.6994	1	453130			5152	13299	3052	3067	6818	6818					-0.01899646985361869
CDLRDIHIA	9	Unmodified	_CDLRDIHIA_					0	0	0			REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2511596679688	2	528.268758	1054.52296	1.0697	0.0005651	1.0779	0.00056941	2.1476	0.0011345	528.7694325353473	51.283	0.31588	51.102	50.945	51.261	-0.18071					10	7	2	0	0	0	0.024495	1	5279	5279		34.173	5.9183	1	146050	+		5153	31841	3053	3068	6819	6819					-0.002116715769716393
CDLRDIHIA	9	Unmodified	_CDLRDIHIA_					0	0	0			REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.268758	1054.52296	-0.85515	-0.00045175	5.3884	0.0028465	4.5332	0.0023948	528.2716995777804	50.768	0.3999	50.768	50.445	50.845	0	-0.062023	0.00095927	NaN	34.173	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	734240	+		5154	31841	3053	3068							-0.002116715769716393
CDLRDIHIA	9	Unmodified	_CDLRDIHIA_					0	0	0			REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.268758	1054.52296	-0.44992	-0.00023768	4.651	0.002457	4.2011	0.0022193	528.2712468214789	50.949	0.33932	50.8	50.594	50.933	-0.14916	-0.030024	0.00018022	NaN	34.173	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757830	+		5155	31841	3053	3068							-0.002116715769716393
CDLRDIHIA	9	Unmodified	_CDLRDIHIA_					0	0	0			REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.268758	1054.52296	-0.23979	-0.00012667	4.4325	0.0023415	4.1927	0.0022149	528.2709694582368	50.569	0.51424	50.65	50.444	50.958	0.08099	-0.17981	-5.0637E-05	NaN	34.173	27	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	823390	+		5156	31841	3053	3068							-0.002116715769716393
CDLRRAQP	8	Unmodified	_CDLRRAQP_					0	0	0		ENST00000496281.1_1_20:62323608-62327208:+|nuORF	ENST00000496281.1_1_20:62323608-62327208:+|nuORF	ENST00000496281.1_1_20:62323608-62327208:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2773132324219	2	479.747993	957.481433	-0.42329	-0.00020307	0.83178	0.00039904	0.40848	0.00019597	479.74827473934346	21.527	0.87205	21.598	21.155	22.028	0.071487					31	17	2	0	0	0	0.027866	1	599	599		28.254	0	1	35074			5157	15563	3054	3069	6820	6820					0.000991924543427558
CDNIDIVHV	9	Unmodified	_CDNIDIVHV_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7877197265625	2	514.247492	1026.48043	-0.90739	-0.00046662	2.0477	0.001053	1.1403	0.00058639	514.2489481737264	23.997	0.43202	23.95	23.656	24.088	-0.047146					12	9	2	0	0	0	0.024319	1	1010	1010		31.53	1.0262	1	27489	+		5158	20725	3055	3070	6821	6821					-0.03175066705216523
CDPLLFFL	8	Unmodified	_CDPLLFFL_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|228|3|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|228|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.29510498046875	2	484.251514	966.488476	-0.48081	-0.00023283	-3.7392	-0.0018107	-4.22	-0.0020435	484.2493821552766	83.627	4.3672	83.627	81.341	85.708	0					206	103	3	0	0	0	0.027866	1	10679	10679		86.935	0	1	640110	+		5159	36255	3056	3071	6822	6822					0.003891122822210491
CDPTLCIGQL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))DPTLCIGQL_	C(1)DPTLCIGQL		C(71)DPTLC(-71)IGQL		0	1	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2622680664062	2	560.262284	1118.51002	0.16653	9.3302E-05	0.45661	0.00025582	0.62314	0.00034912	560.2623462077842	87.644	1.1057	87.644	87.321	88.426	0					66	26	4	0	0	0	0.21865	1	11034	11034		118.74	8.6232	2	2077100	+		5160	31835	3057	3072	6823	6823	421				-0.04449870751409435
CDQINKELE	9	Unmodified	_CDQINKELE_					0	0	0		ENSG00000125447|ENST00000537686|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3	ENSG00000125447|ENST00000537686|GGA3	ENSG00000125447|ENST00000537686|GGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.259765625	2	546.255514	1090.49647	-0.27245	-0.00014883	-0.27811	-0.00015192	-0.55057	-0.00030075	546.2553334712911	59.724	0.52011	59.476	59.09	59.61	-0.24842					29	12	3	0	0	0	0.024367	1	6615	6615		44.377	1.5129	1	1672700			5161	4105	3058	3073	6824	6824					-0.04515405258962346
CDRVQVRR	8	Unmodified	_CDRVQVRR_					0	0	0		nc|ENSG00000123415|Q53HV7-2|SMUG1	nc|ENSG00000123415|Q53HV7-2|SMUG1	nc|ENSG00000123415|Q53HV7-2|SMUG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.8134765625	2	516.279992	1030.54543	-0.31365	-0.00016193	0.52439	0.00027073	0.21074	0.0001088	516.2800253441444	66.061	0.69048	65.819	65.457	66.148	-0.24144					21	16	2	0	0	0	0.027866	1	7595	7595		23.042	0	1	308610			5162	18232	3059	3074	6825	6825					0.031379726112845674
CDRVQVRR	8	Unmodified	_CDRVQVRR_					0	0	0		nc|ENSG00000123415|Q53HV7-2|SMUG1	nc|ENSG00000123415|Q53HV7-2|SMUG1	nc|ENSG00000123415|Q53HV7-2|SMUG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.279992	1030.54543	-0.65897	-0.00034021	0.99921	0.00051587	0.34024	0.00017566	516.2803337793563	66.027	0.61536	65.813	65.421	66.037	-0.21327	0.0035245	0.00028304	NaN	23.042	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339040			5163	18232	3059	3074							0.031379726112845674
CDRVQVRR	8	Unmodified	_CDRVQVRR_					0	0	0		nc|ENSG00000123415|Q53HV7-2|SMUG1	nc|ENSG00000123415|Q53HV7-2|SMUG1	nc|ENSG00000123415|Q53HV7-2|SMUG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.279992	1030.54543	-0.38984	-0.00020127	0.7364	0.00038019	0.34656	0.00017892	516.2800062252652	66.048	0.68757	65.797	65.395	66.082	-0.25112	-0.012792	1.1675E-05	NaN	23.042	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339720			5164	18232	3059	3074							0.031379726112845674
CDSNRCPLV	9	Carbamidomethyl (C)	_CDSNRC(Carbamidomethyl (C))PLV_	CDSNRC(1)PLV		C(-60)DSNRC(60)PLV		0	1	0			REV__ENST00000429490.5_1_10:52103921-52104050:-|nuORF	REV__ENST00000429490.5_1_10:52103921-52104050:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.239501953125	2	532.236601	1062.45865	-0.6044	-0.00032168	3.5069	0.0018665	2.9025	0.0015448	532.2383187042672	40.269	0.59568	40.044	39.773	40.368	-0.225					48	15	4	0	0	0	0.4752	1	3480	3480		60.972	6.2496	2	3674100	+		5165	32337	3060	3075	6826	6826	425				-0.07008194725449357
CDTKMHVLH	9	Unmodified	_CDTKMHVLH_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2553100585938	2	542.257336	1082.50012	2.9567	0.0016033	-0.024346	-1.3202E-05	2.9323	0.0015901	542.2571553229526	17.127	0.22272	17.127	17.028	17.25	0					10	4	3	0	0	0	0.96322	1	129	129		27.882	6.9353	1	40963			5166	1812	3061	3076	6827	6827					-0.037830139661082285
CDVPLVIKL	9	Unmodified	_CDVPLVIKL_					0	0	0		nc|ENSG00000221977|Q8NGC2|OR4E2;ENSG00000221977|ENST00000641524|OR4E2	nc|ENSG00000221977|Q8NGC2|OR4E2	nc|ENSG00000221977|Q8NGC2|OR4E2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7637634277344	2	500.298996	998.583439	0.041218	2.0621E-05	-2.5825	-0.001292	-2.5413	-0.0012714	500.2978103063187	99.313	0.52736	99.323	99.09	99.617	0.010239					19	11	2	0	0	0	0.024405	1	12697	12697		44.117	19.613	1	57265			5167	10629	3062	3077	6828	6828					0.08409045753376176
CEAEQVAVCQY	11	Unmodified	_CEAEQVAVCQY_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.7611083984375	2	621.760106	1241.50566	-1.0457	-0.0006502	1.0153	0.00063126	-0.030459	-1.8938E-05	621.7606160963422	70.883	1.0351	70.626	70.411	71.446	-0.25713					59	25	3	0	0	0	0.87847	1	8301	8301		52.937	1.6012	1	4215700			5168	8127	3063	3078	6829	6829					-0.10543379964951782
CECYVQSPVS	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))ECYVQSPVS_	C(0.616)EC(0.384)YVQSPVS		C(2.1)EC(-2.1)YVQSPVS		0	1	0			REV__ENSG00000107518|ENST00000355044|ATRNL1	REV__ENSG00000107518|ENST00000355044|ATRNL1	MSMS	OPSCC_40_ClassI_Rep-3	6	586.2413330078125	2	586.241549	1170.46855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.708	1	61.451	60.951	61.951	-0.25725								0	0	0	0.72242	1	6899	6899		58.782	9.3404	2		+		5169	21669	3064	3079	6830	6830	276				-0.10987051510710444
CEDDHHLPTV	10	Unmodified	_CEDDHHLPTV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.2485961914062	2	583.250763	1164.48697	-1.5701	-0.00091578	-1.4079	-0.00082119	-2.9781	-0.001737	583.2496993777909	80.023	0.96262	80.023	79.744	80.707	0					55	22	4	0	0	0	0.82838	1	9951	9951		58.782	5.4305	1	2062800			5170	4600	3065	3080	6831	6831					-0.08869173544508158
CEDDHHLPTV	10	Unmodified	_CEDDHHLPTV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.2484741210938	2	583.250763	1164.48697	-1.9257	-0.0011232	-1.3049	-0.00076107	-3.2306	-0.0018843	583.2497855339101	80.247	0.92255	80.096	79.758	80.68	-0.15168					56	21	4	0	0	0	0.52982	1	9934	9934		84.916	10.66	1	2197100			5171	4600	3065	3080	6832	6832					-0.08869173544508158
CEDDHHLPTV	10	Unmodified	_CEDDHHLPTV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.2489013671875	2	583.250763	1164.48697	-0.21029	-0.00012265	-3.3128	-0.0019322	-3.523	-0.0020548	583.248904421307	80.063	0.88266	80.084	79.771	80.654	0.021439					60	20	5	0	0	0	0.71272	1	9864	9864		66.429	3.123	1	2253200			5172	4600	3065	3080	6833	6833					-0.08869173544508158
CEDDHHLPTV	10	Unmodified	_CEDDHHLPTV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.248779296875	2	583.250763	1164.48697	0.094842	5.5317E-05	-2.9225	-0.0017045	-2.8276	-0.0016492	583.248849114932	80.232	1.2273	79.994	79.621	80.848	-0.23784					62	29	4	0	0	0	0.52982	2	9608	9595;9608		84.916	26.134	1	2006400			5173	4600	3065	3080	6834;6835	6835					-0.08869173544508158
CEDDHHLPTV	10	Unmodified	_CEDDHHLPTV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.2484130859375	2	583.250763	1164.48697	-0.4998	-0.00029151	-2.5695	-0.0014986	-3.0693	-0.0017902	583.249059838832	80.161	1.2383	80.015	79.701	80.939	-0.146					63	29	4	0	0	0	0.60198	1	9579	9579		76.774	12.567	1	2119600			5174	4600	3065	3080	6836	6836					-0.08869173544508158
CEDEVLEHL	9	Unmodified	_CEDEVLEHL_					0	0	0		C7|p.E549V|1|0.43|ENSG00000112936|chr5:40959605-40959605|A/T|missense_variant	C7|p.E549V|1|0.43|ENSG00000112936|chr5:40959605-40959605|A/T|missense_variant	C7|p.E549V|1|0.43|ENSG00000112936|chr5:40959605-40959605|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2677612304688	2	543.742239	1085.46993	-0.1214	-6.6008E-05	-0.40392	-0.00021963	-0.52532	-0.00028564	543.7418829124156	36.541	0.44253	36.324	36.088	36.531	-0.21661					15	10	2	0	0	0	0.024457	1	2855	2855		45.952	0	1	227830			5175	199	3066	3081	6837	6837					-0.06939094150311576
CEDPGFPEYY	10	Unmodified	_CEDPGFPEYY_					0	0	0			REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	609.7570190429688	2	610.234247	1218.45394	-1.0657	-0.00065033	-4.1988	-0.0025622	-5.2645	-0.0032126	610.2314116689935	53.326	0.41532	53.199	52.951	53.366	-0.12705					24	10	3	0	0	0	0.03519	1	5551	5551		9.7057	0	1	300850	+		5176	22321	3067	3082	6838	6838					-0.14654800387188516
CEDSKRKA	8	Unmodified	_CEDSKRKA_					0	0	0		nc|ENSG00000187045|Q8IU80-2|TMPRSS6;ENSG00000187045|ENST00000676104|TMPRSS6;nc|ENSG00000187045|Q8IU80|TMPRSS6;nc|ENSG00000187045|Q8IU80-5|TMPRSS6	nc|ENSG00000187045|Q8IU80-2|TMPRSS6	nc|ENSG00000187045|Q8IU80-2|TMPRSS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.3056640625	2	468.732009	935.449465	0.078571	3.6829E-05	1.7188	0.00080565	1.7974	0.00084248	468.7324237784937	53.596	0.55514	53.345	52.93	53.485	-0.25098					24	14	3	0	0	0	0.027866	1	5561	5561		15.642	8.4485	1	211160			5177	9603	3068	3083	6839	6839					-0.020842200194465477
CEESFTFVDL	10	Unmodified	_CEESFTFVDL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	595.2598266601562	2	595.257722	1188.50089	-1.1638	-0.00069278	3.9505	0.0023516	2.7867	0.0016588	595.2599160593256	76.395	0.95702	76.166	75.815	76.772	-0.22843					63	23	3	0	0	0	0.50466	1	9383	9383		87.754	10.98	1	2419200	+		5178	29143	3069	3084	6840	6840					-0.08581940836052127
CEESFTFVDL	10	Unmodified	_CEESFTFVDL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	595.259765625	2	595.257722	1188.50089	0.018876	1.1236E-05	2.5531	0.0015198	2.572	0.001531	595.2590905917706	76.159	0.91277	76.171	75.863	76.775	0.011642					71	22	4	0	0	0	0.42446	1	9327	9327		96.19	19.416	1	2307100	+		5179	29143	3069	3084	6841	6841					-0.08581940836052127
CEESFTFVDL	10	Unmodified	_CEESFTFVDL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.2598266601562	2	595.257722	1188.50089	-0.52476	-0.00031237	3.1811	0.0018936	2.6563	0.0015812	595.2594963012809	76.528	1.3396	76.26	75.626	76.966	-0.26806					80	32	3	0	0	0	0.55296	2	9062	9052;9062		82.305	15.802	1	4654000	+		5180	29143	3069	3084	6842;6843	6843					-0.08581940836052127
CEESFTFVDL	10	Unmodified	_CEESFTFVDL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.2599487304688	2	595.257722	1188.50089	-0.56865	-0.00033849	3.4217	0.0020368	2.8531	0.0016983	595.2596141171159	76.472	1.2218	76.22	75.641	76.863	-0.25162					83	29	4	0	0	0	0.57825	1	9066	9066		79.451	8.1553	1	4054100	+		5181	29143	3069	3084	6844	6844					-0.08581940836052127
CEESFTFVDL	10	Unmodified	_CEESFTFVDL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.2595825195312	2	595.257722	1188.50089	-0.43637	-0.00025975	3.1754	0.0018902	2.739	0.0016304	595.2595060900074	76.285	1.2387	76.117	75.741	76.98	-0.16854					75	29	3	0	0	0	0.57825	4	9026	9026;9050;9064;9089		79.451	10.664	1	4259400	+		5182	29143	3069	3084	6845;6846;6847;6848	6845					-0.08581940836052127
CEFHLLFVL	9	Unmodified	_CEFHLLFVL_					0	0	0		ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.8159790039062	2	560.79662	1119.57869	0.17346	9.7275E-05	2.6907	0.001509	2.8642	0.0016062	560.7975446723652	81.823	0.34122	81.63	81.419	81.76	-0.19334					10	7	2	0	0	0	0.024466	1	9851	9851		25.45	0	1	54125			5183	13178	3070	3085	6849	6849					0.023681616106387082
CEFKLVIKKTT	11	Unmodified	_CEFKLVIKKTT_					0	0	0			REV__ENST00000493084.1_1_8:87029050-87029317:+|nuORF	REV__ENST00000493084.1_1_8:87029050-87029317:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2572021484375	3	437.256458	1308.74754	0.70758	0.0003094	1.3259	0.00057975	2.0335	0.00088914	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.03	1	11992	11992		30.139	4.0758	1	1350500	+		5184	33756	3071	3086	6850	6850					0.10552018453472556
CEFSQCLESP	10	Unmodified	_CEFSQCLESP_					0	0	0			REV__ENSG00000171295|ENST00000304060|ZNF440	REV__ENSG00000171295|ENST00000304060|ZNF440	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.7276611328125	2	571.728274	1141.442	-1.5713	-0.00089838	0.94689	0.00054137	-0.62445	-0.00035702	571.7286734344957	51.347	1.3189	51.434	51.039	52.358	0.087006					94	35	4	0	0	0	1.118	1	5384	5384		30.318	1.1477	1	4867000	+		5185	26557	3072	3087	6851	6851					-0.12306740402073046
CEGHNSDF	8	Unmodified	_CEGHNSDF_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2371520996094	2	454.663792	907.313031	0.471	0.00021415	-2.9602	-0.0013459	-2.4891	-0.0011317	454.6623707351725	59.57	1.1595	59.394	58.916	60.076	-0.1761					47	29	2	0	0	0	0.027866	1	6545	6545		11.511	3.2797	1	306100			5186	10221;10159	3073	3088	6852	6852					-0.14433334249974905
CEHAHETQW	9	Unmodified	_CEHAHETQW_					0	0	0			REV__ENST00000346798.7_1_21:27484329-27484410:-|nuORF	REV__ENST00000346798.7_1_21:27484329-27484410:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7357788085938	2	570.729997	1139.44544	-0.73804	-0.00042122	4.234	0.0024165	3.4959	0.0019952	571.2348810963838	40.18	0.30928	39.95	39.811	40.12	-0.23021					11	7	2	0	0	0	0.024427	1	3436	3436		42.396	20.71	1	108670	+		5187	30704	3074	3089	6853	6853					-0.11870309513165012
CEHNNVGIIS	10	Unmodified	_CEHNNVGIIS_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-2|CES5A	REV__nc|ENSG00000159398|Q6NT32-2|CES5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.7991943359375	2	543.255848	1084.49714	-0.048087	-2.6124E-05	-3.5055	-0.0019044	-3.5536	-0.0019305	543.2536280062722	71.616	1.0572	71.327	71.036	72.093	-0.28857					46	27	3	0	0	0	0.03519	1	8710	8710		32.812	0	1	1066700	+		5188	36827	3075	3090	6854	6854					-0.0417256581924903
CEICECRPRPK	11	Unmodified	_CEICECRPRPK_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2252502441406	3	445.210637	1332.61008	-0.4489	-0.00019985	0.46438	0.00020675	0.015479	6.8913E-06	445.21077078925475	30.428	0.67429	30.184	29.991	30.666	-0.24415					18	15	2	0	0	0	0.02478	1	1961	1961		32.034	3.4574	1	57151			5189	6160	3076	3091	6855	6855					-0.04291956689235121
CEIHHGQTGG	10	Unmodified	_CEIHHGQTGG_					0	0	0		nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11	nc|ENSG00000138081|Q86XK2-3|FBXO11	nc|ENSG00000138081|Q86XK2-3|FBXO11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8206787109375	2	519.724715	1037.43488	-0.91841	-0.00047732	-3.7908	-0.0019702	-4.7092	-0.0024475	519.7215019637204	80.693	0.48137	80.693	80.457	80.939	0					20	11	3	0	0	0	0.03519	1	10005	10005		42.864	14.61	1	268930			5190	5203	3077	3092	6856	6856					-0.08234292167594504
CEILKCIGR	9	Unmodified	_CEILKCIGR_					0	0	0			REV__ENSG00000167207|ENST00000647318|NOD2	REV__ENSG00000167207|ENST00000647318|NOD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.3173828125	2	517.777905	1033.54126	0.75175	0.00038924	0.90707	0.00046966	1.6588	0.0008589	518.2802205521494	83.821	0.94389	83.652	83.409	84.353	-0.16915					46	21	4	0	0	0	0.02435	1	10157	10157		42.396	0	1	94076	+		5191	26119	3078	3093	6857	6857					0.025827470733702285
CEKCKYSKV	9	Unmodified	_CEKCKYSKV_					0	0	0			REV__ENSG00000167637|ENST00000618787|ZNF283	REV__ENSG00000167637|ENST00000618787|ZNF283	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7905883789062	2	544.26737	1086.52019	-2.1094	-0.0011481	-2.0965	-0.001141	-4.2059	-0.0022891	544.266660908796	49.473	0.33663	49.547	49.279	49.615	0.074196					11	8	2	0	0	0	0.024457	1	5023	5023		21.96	6.3181	1	127760	+		5192	26169	3079	3094	6858	6858					-0.019612630261690356
CEKKKHVQY	9	Unmodified	_CEKKKHVQY_					0	0	0			REV__nc|ENSG00000125952|P61244-5|MAX	REV__nc|ENSG00000125952|P61244-5|MAX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.8092041015625	2	581.805508	1161.59646	2.3146	0.0013467	3.8027	0.0022124	6.1173	0.0035591	581.8075385555265	17.657	0.68731	17.657	17.498	18.186	0					21	13	3	0	0	0	0.80003	1	189	189		39.253	1.7447	1	165840	+		5193	36640	3080	3095	6859	6859					0.022128768654965825
CEKKLHPR	8	Unmodified	_CEKKLHPR_					0	0	0		nc|ENSG00000172795|Q8IU60-2|DCP2;ENSG00000172795|ENST00000389063|DCP2	nc|ENSG00000172795|Q8IU60-2|DCP2	nc|ENSG00000172795|Q8IU60-2|DCP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3125915527344	2	505.781836	1009.54912	-0.14258	-7.2115E-05	-3.747	-0.0018952	-3.8896	-0.0019673	505.77935244849067	21.616	0.87473	21.425	20.931	21.806	-0.19072					24	17	2	0	0	0	0.027866	1	624	624		18.324	6.8134	1	37532			5194	8310	3081	3096	6860	6860					0.04472642385144354
CEKKLHPR	8	Unmodified	_CEKKLHPR_					0	0	0		nc|ENSG00000172795|Q8IU60-2|DCP2;ENSG00000172795|ENST00000389063|DCP2	nc|ENSG00000172795|Q8IU60-2|DCP2	nc|ENSG00000172795|Q8IU60-2|DCP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.781836	1009.54912	0.32977	0.00016679	-4.4503	-0.0022509	-4.1205	-0.0020841	505.7791495935516	21.41	0.5754	21.233	20.822	21.397	-0.17721	-0.11839	-0.0018846	NaN	12.207	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45263			5195	8310	3081	3096							0.04472642385144354
CEKKLHPR	8	Unmodified	_CEKKLHPR_					0	0	0		nc|ENSG00000172795|Q8IU60-2|DCP2;ENSG00000172795|ENST00000389063|DCP2	nc|ENSG00000172795|Q8IU60-2|DCP2	nc|ENSG00000172795|Q8IU60-2|DCP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.781836	1009.54912	-1.3875	-0.0007018	-1.9191	-0.00097065	-3.3066	-0.0016724	505.7805008753416	21.608	0.58362	21.395	21.02	21.604	-0.2128	0.04415	0.00067586	NaN	12.207	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50942			5196	8310	3081	3096							0.04472642385144354
CEKRPKVAE	9	Unmodified	_CEKRPKVAE_					0	0	0			REV__ENSG00000179331|ENST00000320578|RAB39A	REV__ENSG00000179331|ENST00000320578|RAB39A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2819213867188	2	530.284408	1058.55426	-1.0052	-0.00053302	-2.6519	-0.0014063	-3.6571	-0.0019393	530.2831082811714	56.126	1.1877	55.91	55.168	56.356	-0.21551					74	31	5	0	0	0	0.6238	1	6073	6073		51.193	5.2407	1	3022600	+		5197	27258	3082	3097	6861	6861					0.02732901457125081
CEKSKWQNF	9	Unmodified	_CEKSKWQNF_					0	0	0			REV__ENSG00000087152|ENST00000587097|ATXN7L3	REV__ENSG00000087152|ENST00000587097|ATXN7L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3054809570312	2	585.274041	1168.53353	0.034833	2.0387E-05	-4.4802	-0.0026221	-4.4454	-0.0026018	585.2715676471543	81.573	0.41946	81.344	81.188	81.608	-0.22891					14	9	2	0	0	0	0.024477	1	9812	9812		20.947	0	1	134080	+		5198	20789	3083	3098	6862	6862					-0.04399688922558198
CELETVKSL	9	Unmodified	_CELETVKSL_					0	0	0			REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.26336669921875	2	511.26535	1020.51615	0.11573	5.9167E-05	-3.6818	-0.0018824	-3.5661	-0.0018232	511.263426838151	81.166	2.8244	80.973	80.561	83.385	-0.19333					137	66	4	0	0	0	0.15366	1	9841	9841		98.629	5.4339	1	6885400	+		5199	36788	3084	3099	6863	6863					0.006709707517870811
CELETVKSL	9	Unmodified	_CELETVKSL_					0	0	0			REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.26373291015625	2	511.26535	1020.51615	-0.42869	-0.00021918	-3.1425	-0.0016066	-3.5712	-0.0018258	511.26372255764835	81.111	2.885	80.968	80.576	83.461	-0.14248					141	67	4	0	0	0	0.2101	1	9820	9820		87.696	4.946	1	8479700	+		5200	36788	3084	3099	6864	6864					0.006709707517870811
CELLSSLLL	9	Unmodified	_CELLSSLLL_					0	0	0			REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.78082275390625	2	495.780636	989.546719	0.17533	8.6923E-05	-0.51402	-0.00025484	-0.33869	-0.00016792	495.7801236667535	90.497	2.8053	90.359	89.488	92.293	-0.13824					136	66	4	0	0	0	0.36105	1	11073	11073		68.485	5.1784	1	1209800	+		5201	29784	3085	3100	6865	6865					0.05152749136846069
CELMPSLLL	9	Unmodified	_CELMPSLLL_					0	0	0			REV__ENST00000559714.5_1_15:100348375-100353279:+|nuORF	REV__ENST00000559714.5_1_15:100348375-100353279:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.76885986328125	2	509.769214	1017.52388	-0.090065	-4.5912E-05	0.5393	0.00027492	0.44924	0.00022901	509.76948916819794	42.163	0.73635	42.04	41.718	42.454	-0.12299					57	19	4	0	0	0	0.72875	1	3787	3787		44.117	0	1	1593900	+		5202	35125	3086	3101	6866	6866					0.015814067477208482
CELRMGYTVP	10	Unmodified	_CELRMGYTVP_					0	0	0		ENSG00000156689|ENST00000287275|GLYATL2	ENSG00000156689|ENST00000287275|GLYATL2	ENSG00000156689|ENST00000287275|GLYATL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.7785034179688	2	584.778102	1167.54165	-0.32916	-0.00019249	0.14162	8.2819E-05	-0.18754	-0.00010967	584.7781325273284	42.63	1.2406	42.507	41.82	43.061	-0.12299					55	32	2	0	0	0	0.77808	1	3884	3884		62.107	10.915	1	3264300			5203	6544	3087	3102	6867	6867					-0.03541877997440679
CELSASLLSV	10	Unmodified	_CELSASLLSV_					0	0	0			REV__ENST00000462002.5_1_1:155679570-155696073:+|nuORF	REV__ENST00000462002.5_1_1:155679570-155696073:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.26361083984375	2	511.26535	1020.51615	-0.42869	-0.00021918	-3.1425	-0.0016066	-3.5712	-0.0018258	511.26372255764835	81.111	2.885	80.968	80.576	83.461	-0.14248					141	67	4	0	0	0	0.37169	1	9829	9829		101.6	9.4101	1	8479700	+		5204	32889	3088	3103	6868	6868					0.006709707517984498
CELTFQEGVV	10	Unmodified	_CELTFQEGVV_					0	0	0			REV__nc|ENSG00000154133|Q8WZ75-3|ROBO4	REV__nc|ENSG00000154133|Q8WZ75-3|ROBO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7689208984375	2	562.768257	1123.52196	-0.048057	-2.7045E-05	2.8828	0.0016224	2.8348	0.0015953	562.7696317157354	63.001	0.56544	62.78	62.576	63.141	-0.22097					31	13	3	0	0	0	0.941	1	7114	7114		51.335	1.7994	1	1172100	+		5205	24938	3089	3104	6869	6869					-0.03485930736565024
CEMELKSSL	9	Unmodified	_CEMELKSSL_					0	0	0		nc|ENSG00000180694|Q6YI46-2|TMEM64;nc|ENSG00000180694|Q6YI46-3|TMEM64;nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2415161132812	2	520.24356	1038.47257	-1.1821	-0.00061498	-2.4976	-0.0012994	-3.6797	-0.0019144	520.2421781361415	75.748	1.5041	75.748	75.378	76.882	0					120	38	5	0	0	0	0.10174	2	9354	9354;9380		110.12	5.3733	1	15519000			5206	8990	3090	3105	6870;6871	6870					-0.045129620170200724
CEMELKSSL	9	Unmodified	_CEMELKSSL_					0	0	0		nc|ENSG00000180694|Q6YI46-2|TMEM64;nc|ENSG00000180694|Q6YI46-3|TMEM64;nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2405395507812	2	520.24356	1038.47257	0.041792	2.1742E-05	-3.6766	-0.0019127	-3.6348	-0.001891	520.2415984909967	75.758	1.4626	75.77	75.436	76.898	0.011642					119	37	4	0	0	0	0.15366	1	9303	9303		98.629	8.0285	1	19533000			5207	8990	3090	3105	6872	6872					-0.045129620170200724
CEMELKSSL	9	Unmodified	_CEMELKSSL_					0	0	0		nc|ENSG00000180694|Q6YI46-2|TMEM64;nc|ENSG00000180694|Q6YI46-3|TMEM64;nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.2418823242188	2	520.24356	1038.47257	0.1454	7.5644E-05	-3.6698	-0.0019092	-3.5244	-0.0018335	520.2415734313493	76.037	1.4186	75.778	75.438	76.856	-0.25866					100	34	4	0	0	0	0.057894	1	9062	9062		125.81	12.402	1	7121100			5208	8990	3090	3105	6873	6873					-0.045129620170200724
CEMELKSSL	9	Unmodified	_CEMELKSSL_					0	0	0		nc|ENSG00000180694|Q6YI46-2|TMEM64;nc|ENSG00000180694|Q6YI46-3|TMEM64;nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	nc|ENSG00000180694|Q6YI46-2|TMEM64	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.2415161132812	2	520.24356	1038.47257	0.21036	0.00010944	-3.7889	-0.0019712	-3.5786	-0.0018617	520.2414597443791	75.893	1.5432	75.717	75.389	76.933	-0.17548					114	37	5	0	0	0	0.26966	1	9028	9028		79.713	7.8351	1	7731700			5209	8990	3090	3105	6874	6874					-0.045129620170200724
CEMMIRQI	8	2 Oxidation (M)	_CEM(Oxidation (M))M(Oxidation (M))IRQI_		CEM(1)M(1)IRQI		CEM(120)M(120)IRQI	0	0	2			REV__ENSG00000203872|ENST00000388923|C6orf163	REV__ENSG00000203872|ENST00000388923|C6orf163	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.23876953125	2	528.237755	1054.46096	-0.63625	-0.00033609	3.5997	0.0019015	2.9634	0.0015654	528.2394985697882	67.637	3.6181	67.637	66.41	70.029	0					256	93	4	0	0	0	0.2917	2	8045	8045;8068		115.46	34.289	1	5184300	+		5210	28551	3091	3106	6875;6876	6875		846;847			-0.06409482311983083
CEMMIRQI	8	2 Oxidation (M)	_CEM(Oxidation (M))M(Oxidation (M))IRQI_		CEM(1)M(1)IRQI		CEM(100)M(100)IRQI	0	0	2			REV__ENSG00000203872|ENST00000388923|C6orf163	REV__ENSG00000203872|ENST00000388923|C6orf163	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2392578125	2	528.237755	1054.46096	-0.16877	-8.9152E-05	3.0968	0.0016359	2.9281	0.0015467	528.2392665310336	67.922	3.5687	67.634	66.474	70.042	-0.28834					255	91	4	0	0	0	0.35998	1	8089	8089		102.77	20.023	1	4931700	+		5211	28551	3091	3106	6877	6877		846;847			-0.06409482311983083
CEMMIRQI	8	2 Oxidation (M)	_CEM(Oxidation (M))M(Oxidation (M))IRQI_		CEM(1)M(1)IRQI		CEM(120)M(120)IRQI	0	0	2			REV__ENSG00000203872|ENST00000388923|C6orf163	REV__ENSG00000203872|ENST00000388923|C6orf163	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2391357421875	2	528.237755	1054.46096	0.19259	0.00010173	2.7189	0.0014362	2.9115	0.0015379	528.2390762959993	67.67	3.6582	67.694	66.457	70.115	0.023911					233	93	4	0	0	0	0.2917	2	7985	7985;8011		115.46	11.256	1	5432900	+		5212	28551	3091	3106	6878;6879	6878		846;847			-0.06409482311983083
CENCSHPK	8	Unmodified	_CENCSHPK_					0	0	0			REV__ENSG00000198633|ENST00000433050|ZNF534	REV__ENSG00000198633|ENST00000433050|ZNF534	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.22503662109375	2	459.183837	916.353121	-0.30078	-0.00013811	1.7951	0.00082427	1.4943	0.00068616	459.1844980049405	26.209	0.45232	26.041	25.809	26.262	-0.16816					20	13	2	0	0	0	0.027866	1	1348	1348		17.468	0	1	163450	+		5213	28442	3092	3107	6880	6880					-0.10840110851052032
CENLVKPED	9	Unmodified	_CENLVKPED_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1;REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3035888671875	2	523.744782	1045.47501	0.16368	8.5728E-05	0.39263	0.00020564	0.55632	0.00029137	523.7447547573372	85.291	0.41005	85.096	84.848	85.258	-0.19508					17	9	3	0	0	0	0.024457	1	10293	10293		15.642	0	1	67433	+		5214	24428;36753	3093	3108	6881	6881					-0.04590790287670643
CEPFMGDN	8	Unmodified	_CEPFMGDN_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA;ENST00000483254.1_1_9:119135964-119158892:+|nuORF	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2693176269531	2	456.664946	911.315339	-0.36605	-0.00016716	1.1158	0.00050952	0.7497	0.00034236	456.6649194265039	45.345	0.16431	45.196	45.148	45.312	-0.1488					5	4	2	0	0	0	0.027866	1	4390	4390		53.351	21.397	1	62596			5215	9160	3094	3109	6882	6882					-0.14386621836524682
CEPGPYFVE	9	Unmodified	_CEPGPYFVE_					0	0	0			REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7808227539062	2	520.723318	1039.43208	0.090896	4.7332E-05	-4.2125	-0.0021935	-4.1216	-0.0021462	520.7210442068389	86.379	0.34575	86.379	86.128	86.474	0					11	7	2	0	0	0	0.024381	1	10853	10853		37.159	2.9866	1	48704	+		5216	29190	3095	3110	6883	6883					-0.08605560345108643
CEPGPYFVE	9	Unmodified	_CEPGPYFVE_					0	0	0			REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7815551757812	2	520.723318	1039.43208	-0.16876	-8.7878E-05	-4.0077	-0.0020869	-4.1765	-0.0021748	520.7213761572056	86.36	0.34723	86.315	86.163	86.51	-0.045105					11	7	2	0	0	0	0.024457	1	10793	10793		21.96	0	1	48407	+		5217	29190	3095	3110	6884	6884					-0.08605560345108643
CEPIEAIAK	9	Unmodified	_CEPIEAIAK_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;ENST00000471256.1_1:206619445-206629134:+|nuORF;MAPKAPK2-SRGAP2|1|fusion;MAPKAPK2-SRGAP2|2|fusion;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2500305175781	2	487.254785	972.495018	-0.23059	-0.00011235	-0.99984	-0.00048717	-1.2304	-0.00059953	487.25417856136954	33.856	0.60176	33.632	33.321	33.923	-0.22412					21	14	2	0	0	0	0.024405	1	2404	2404		27.882	6.9353	1	228430			5218	10972	3096	3111	6885	6885					0.007670054429127049
CEPQDYRPM	9	Unmodified	_CEPQDYRPM_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.283935546875	2	569.736434	1137.45831	0.36468	0.00020777	-0.81602	-0.00046492	-0.45134	-0.00025714	569.7360475951788	81.345	0.16307	81.151	81.05	81.213	-0.19334					5	3	2	0	0	0	0.024506	1	9771	9771		16.473	13.063	1	59010			5219	2298	3097	3112	6886	6886					-0.10491614445300002
CEQETTARRN	10	Unmodified	_CEQETTARRN_					0	0	0		ENST00000399543.1_1_5:43042205-43042844:+|nuORF	ENST00000399543.1_1_5:43042205-43042844:+|nuORF	ENST00000399543.1_1_5:43042205-43042844:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.21234130859375	3	403.187654	1206.54113	1.3195	0.00053202	-0.56489	-0.00022776	0.75464	0.00030426	403.1873786584931	36.456	0.75258	36.257	35.943	36.696	-0.19829					60	18	5	0	0	0	0.03519	1	2862	2862		29.551	3.659	1	1818200			5220	13648	3098	3113	6887	6887					-0.053875813929380456
CEQFSGLI	8	Unmodified	_CEQFSGLI_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.7559814453125	2	448.712753	895.410954	0.02852	1.2797E-05	-3.4561	-0.0015508	-3.4276	-0.001538	448.711083830385	57.395	0.42104	57.395	57.111	57.532	0					21	10	3	0	0	0	0.027866	1	6418	6418		40.573	10.069	1	219620	+		5221	26916	3099	3114	6888	6888					-0.040935256539682996
CERHSHSLM	9	Unmodified	_CERHSHSLM_					0	0	0		ENST00000331268.9_1_15:79189356-79189446:+|nuORF	ENST00000331268.9_1_15:79189356-79189446:+|nuORF	ENST00000331268.9_1_15:79189356-79189446:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.3031616210938	2	550.242218	1098.46988	-0.19784	-0.00010886	2.9737	0.0016362	2.7758	0.0015274	550.2434922841134	78.494	1.3194	78.239	77.826	79.145	-0.25471					84	30	4	0	0	0	0.023837	1	9405	9405		74.255	20.904	1	1402600			5222	12340	3100	3115	6889	6889					-0.07541372631294507
CERNKTNFF	9	Unmodified	_CERNKTNFF_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7528686523438	2	579.771665	1157.52878	-0.016514	-9.5745E-06	-3.764	-0.0021823	-3.7805	-0.0021919	580.2714141670849	74.819	0.12704	74.637	74.555	74.682	-0.18279					4	2	2	0	0	0	0.024535	1	8817	8817		18.324	0	1	76607			5223	2109	3101	3116	6890	6890					-0.04368573065335113
CESCKHTNPK	10	Unmodified	_CESCKHTNPK_					0	0	0			REV__nc|ENSG00000198556|Q5FWF6-2|ZNF789	REV__nc|ENSG00000198556|Q5FWF6-2|ZNF789	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.3154296875	2	573.755158	1145.49576	-1.1752	-0.00067425	-2.7099	-0.0015548	-3.8851	-0.0022291	573.7534613492091	56.899	0.47055	56.899	56.678	57.148	0					18	13	2	0	0	0	0.03519	1	6347	6347		36.447	4.9169	1	169390	+		5224	28433	3102	3117	6891	6891					-0.07116523179684009
CESGSQEVDDL	11	Unmodified	_CESGSQEVDDL_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	591.3246459960938	2	591.234975	1180.4554	-1.3969	-0.00082589	1.3288	0.00078565	-0.068063	-4.0241E-05	591.2360447502326	47.159	0.4318	47.159	46.93	47.361	0					14	11	2	0	0	0	0.024771	1	4725	4725		28.081	0	1	141940	+		5225	24619	3103	3118	6892	6892					-0.12761211089105018
CESLGPGLAVL	11	Unmodified	_CESLGPGLAVL_					0	0	0		ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.813720703125	2	529.781167	1057.54778	-0.090053	-4.7708E-05	-1.6492	-0.00087371	-1.7392	-0.00092142	529.780424587338	80.742	0.73822	80.536	80.215	80.953	-0.20632					26	17	2	0	0	0	0.024734	1	9667	9667		30.504	0	1	120880			5226	8823	3104	3119	6893	6893					0.021309635057377818
CESRTAILDG	10	Unmodified	_CESRTAILDG_					0	0	0			REV__ENST00000345046.10_1_X:152966127-152966343:-|nuORF	REV__ENST00000345046.10_1_X:152966127-152966343:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7960205078125	2	532.755681	1063.49681	-1.2328	-0.00065679	1.1842	0.00063086	-0.04867	-2.5929E-05	532.756165453921	35.29	0.86835	35.29	35.018	35.886	0					49	22	3	0	0	0	0.03519	1	2772	2772		45.022	6.2161	1	780360	+		5227	30694	3105	3120	6894	6894					-0.0323998553913043
CETGGFLLIF	10	Unmodified	_CETGGFLLIF_					0	0	0			REV__ENSG00000170683|ENST00000642047|OR10A3	REV__ENSG00000170683|ENST00000642047|OR10A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.300537109375	2	550.27826	1098.54197	0.15621	8.5958E-05	3.854	0.0021208	4.0102	0.0022067	550.2814550179407	85.81	0.20929	85.615	85.469	85.678	-0.19508					7	4	2	0	0	0	0.03519	1	10379	10379		53.351	0	1	54544	+		5228	26495	3106	3121	6895	6895					-0.0033613500593219214
CETISSKDEDF	11	Unmodified	_CETISSKDEDF_					0	0	0		ENSG00000152484|ENST00000282344|USP12	ENSG00000152484|ENST00000282344|USP12	ENSG00000152484|ENST00000282344|USP12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.1832580566406	3	425.179942	1272.518	-0.059742	-2.5401E-05	3.0114	0.0012804	2.9517	0.001255	425.1818756525927	34.648	1.5417	34.441	34.082	35.623	-0.20696					149	38	7	0	0	0	0.9703	1	2541	2541		43.419	2.3385	1	51056000			5229	6275	3107	3122	6896	6896					-0.10736065020932983
CETRLHIFGPA	11	Unmodified	_CETRLHIFGPA_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9058837890625	3	415.213252	1242.61793	-0.15262	-6.3371E-05	-0.074036	-3.0741E-05	-0.22666	-9.4111E-05	415.2113987661497	21.14	1.2093	21.14	20.562	21.771	0					40	24	3	0	0	0	0.024748	1	654	654		45.022	13.388	1	40899	+		5230	27554	3108	3123	6897	6897					0.006322618942249392
CETRLHIFGPA	11	Unmodified	_CETRLHIFGPA_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	415.213252	1242.61793	0.17488	7.2614E-05	-5.6321	-0.0023385	-5.4572	-0.0022659	415.2109175353123	21.335	0.47976	21.157	20.918	21.397	-0.17721	-0.010854	-0.0013622	NaN	45.022	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51161	+		5231	27554	3108	3123							0.006322618942249392
CETRLHIFGPA	11	Unmodified	_CETRLHIFGPA_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	415.213252	1242.61793	-1.0815	-0.00044905	-4.28	-0.0017771	-5.3615	-0.0022262	415.21145439891313	21.487	0.73381	21.275	20.773	21.506	-0.2128	0.10625	0.00032197	NaN	45.022	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68227	+		5232	27554	3108	3123							0.006322618942249392
CETSGLALYI	10	Unmodified	_CETSGLALYI_					0	0	0			REV__ENSG00000174339|ENST00000307832|OR2Y1	REV__ENSG00000174339|ENST00000307832|OR2Y1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.7774658203125	2	535.26535	1068.51615	-0.79263	-0.00042427	4.3907	0.0023502	3.598	0.0019259	535.2676124017465	46.746	1.0974	46.593	46.309	47.406	-0.15301					99	29	5	0	0	0	0.03519	1	4618	4618		58.782	17.355	1	3683000	+		5233	26854	3109	3124	6898	6898					-0.015370292482430159
CETSGLALYI	10	Unmodified	_CETSGLALYI_					0	0	0			REV__ENSG00000174339|ENST00000307832|OR2Y1	REV__ENSG00000174339|ENST00000307832|OR2Y1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.7772827148438	2	535.26535	1068.51615	-0.70886	-0.00037943	4.3538	0.0023304	3.6449	0.001951	535.26765134429	46.56	1.1994	46.611	46.408	47.607	0.051395					87	33	4	0	0	0	0.03519	1	4541	4541		68.787	21.129	1	4313300	+		5234	26854	3109	3124	6899	6899					-0.015370292482430159
CEVAAGIWGF	10	Unmodified	_CEVAAGIWGF_					0	0	0		ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENSG00000110651|ENST00000263645|CD81;ENST00000531840.1_1_11:2415125-2416354:+|nuORF	ENST00000468153.1_1_11:2416081-2418093:+|nuORF	ENST00000468153.1_1_11:2416081-2418093:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.3145751953125	2	526.747127	1051.4797	-0.67366	-0.00035485	-3.2425	-0.001708	-3.9162	-0.0020628	526.7455734547507	75.761	0.38528	75.516	75.339	75.724	-0.24454					17	10	2	0	0	0	0.03519	1	9258	9258		23.042	0	1	218140			5235	3052	3110	3125	6900	6900					-0.04397861354277666
CEVVKVVFL	9	Unmodified	_CEVVKVVFL_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MSMS	OPSCC_40_ClassI_Rep-1	4	518.2960205078125	2	518.298996	1034.58344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.69	1	78.435	77.935	78.935	-0.25471								0	0	0	0.32793	1	9382	9382		66.429	15.094	1				5236	10590	3111	3126	6901	6901					0.06753045753384868
CEVVKVVFL	9	Unmodified	_CEVVKVVFL_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2958984375	2	518.298996	1034.58344	0.41745	0.00021636	-3.9747	-0.0020601	-3.5573	-0.0018437	518.2966896183357	78.556	1.2719	78.325	77.834	79.106	-0.23141					59	29	4	0	0	0	0.50848	1	9379	9379		58.782	2.3482	1	904970			5237	10590	3111	3126	6902	6902					0.06753045753384868
CEWPFHII	8	Unmodified	_CEWPFHII_					0	0	0			REV__ENST00000518500.1_1_8:80965431-80965644:-|nuORF	REV__ENST00000518500.1_1_8:80965431-80965644:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3035278320312	2	522.752213	1043.48987	0.03758	1.9645E-05	-1.6405	-0.00085755	-1.6029	-0.00083791	523.2508696976489	85.87	0.33907	85.675	85.469	85.808	-0.19508					8	7	2	0	0	0	0.027866	1	10413	10413		26.796	0	1	39160	+		5238	34238	3112	3127	6903	6903					-0.03013253629023893
CEWYKNGVKI	10	Unmodified	_CEWYKNGVKI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;TTN|p.E2119K|1|0.28|ENSG00000155657|chr2:178775509-178775509|C/T|missense_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.87646484375	3	413.877869	1238.61178	-0.46651	-0.00019308	-0.38689	-0.00016012	-0.85339	-0.0003532	413.87678080154353	29.998	1.6434	29.998	29.073	30.717	0					84	40	4	0	0	0	0.98527	1	1874	1874		47.96	2.9373	1	4145300			5239	6479;18400	3113	3128	6904	6904					0.002017436627056668
CEYPKEGHCNN	11	Unmodified	_CEYPKEGHCNN_					0	0	0			REV__ENSG00000147789|ENST00000532777|ZNF7	REV__ENSG00000147789|ENST00000532777|ZNF7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.7249450683594	3	431.837745	1292.49141	0.42417	0.00018317	-0.073164	-3.1595E-05	0.35101	0.00015158	432.17222308395657	36.28	0.29808	36.063	35.947	36.245	-0.21661					12	7	2	0	0	0	0.024734	1	2844	2844		21.78	0	1	80837	+		5240	24581	3114	3129	6905	6905					-0.14314032393212983
CFAVGLVIPT	10	Unmodified	_CFAVGLVIPT_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7559509277344	2	510.283346	1018.55214	-0.8858	-0.00045201	4.3549	0.0022222	3.4691	0.0017702	510.2853801659407	34.64	1.0973	34.691	34.213	35.311	0.050255					67	28	3	0	0	0	0.03519	1	2558	2558		45.952	0	1	1216300			5241	3190	3115	3130	6906	6906					0.043604727192928294
CFCRCIKGGQL	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))FCRC(Carbamidomethyl (C))IKGGQL_	C(0.51)FC(0.51)RC(0.981)IKGGQL		C(0)FC(0)RC(14)IKGGQL		0	2	0			REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.8772277832031	3	447.878999	1340.61517	-0.24157	-0.00010819	-3.8158	-0.001709	-4.0573	-0.0018172	447.8774573127799	64.548	2.265	64.313	63.284	65.549	-0.2345					157	56	6	0	0	0	0.96926	1	7322	7322		43.651	7.1229	3	9026900	+		5242	21963	3116	3131	6907	6907	282;283;284				-0.0415165282659018
CFDEKSKHIT	10	Unmodified	_CFDEKSKHIT_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.811279296875	3	403.197379	1206.57031	0.3626	0.0001462	-2.8879	-0.0011644	-2.5253	-0.0010182	403.195439058281	28.546	0.21332	28.378	28.254	28.467	-0.16897					6	4	2	0	0	0	0.03519	1	1677	1677		38.754	0	1	36098			5243	9617	3117	3132	6908	6908					-0.024714370966421484
CFEECHGQRC	10	2 Carbamidomethyl (C)	_CFEEC(Carbamidomethyl (C))HGQRC(Carbamidomethyl (C))_	CFEEC(1)HGQRC(1)		C(-44)FEEC(44)HGQRC(47)		0	2	0			REV__ENSG00000008710|ENST00000262304|PKD1	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.4970703125	3	442.498846	1324.47471	-1.0666	-0.00047195	-2.5822	-0.0011426	-3.6487	-0.0016146	442.4977112553458	29.452	0.68696	29.207	28.924	29.611	-0.24524					44	15	4	0	0	0	0.98527	1	1801	1801		47.96	8.0864	3	1102500	+		5244	19884	3118	3133	6909	6909	254;255				-0.174548565508303
CFEILIWLN	9	Unmodified	_CFEILIWLN_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.8429565429688	2	575.801903	1149.58925	0.54396	0.00031321	-4.1747	-0.0024038	-3.6308	-0.0020906	575.7995351206077	89.063	1.5227	89.042	88.056	89.579	-0.021645					52	35	2	0	0	0	0.024294	1	11165	11165		65.803	17.888	1	119060	+		5245	20317	3119	3134	6910	6910					0.020441442650735553
CFFIQDDDS	9	Unmodified	_CFFIQDDDS_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;CAMTA2|p.Q527Sfs*66|1|0.3|ENSG00000108509|chr17:4979743-4979743|G/-|frameshift_variant	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2828369140625	2	545.213314	1088.41208	0.13913	7.5858E-05	3.6122	0.0019694	3.7513	0.0020453	545.2155003803215	51.086	0.26482	50.81	50.702	50.967	-0.27643					14	6	3	0	0	0	0.024506	1	5229	5229		23.042	0	1	387350			5246	2904	3120	3135	6911	6911					-0.128593560757281
CFGIFVPDAL	10	Unmodified	_CFGIFVPDAL_					0	0	0			REV__ENSG00000197355|ENST00000409858|UAP1L1	REV__ENSG00000197355|ENST00000409858|UAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7535400390625	2	541.272978	1080.5314	-0.98	-0.00053045	2.4943	0.0013501	1.5143	0.00081963	541.2744593391047	38.592	0.32286	38.371	38.256	38.579	-0.22149					12	7	2	0	0	0	0.03519	1	3209	3209		30.504	13.036	1	71974	+		5247	28294	3121	3136	6912	6912					-0.005641176603603526
CFGWVLITL	9	Unmodified	_CFGWVLITL_					0	0	0			REV__ENST00000196371.9_1_5:41853612-41853654:-|nuORF	REV__ENST00000196371.9_1_5:41853612-41853654:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.3021850585938	2	526.285889	1050.55722	0.072296	3.8049E-05	2.6728	0.0014067	2.7451	0.0014447	526.2871300917677	74.562	1.1432	74.299	74.01	75.153	-0.26325					59	26	4	0	0	0	0.33184	1	8820	8820		71.378	0.082209	1	2559700	+		5248	29294	3122	3137	6913	6913					0.03396776581917038
CFHIYLMW	8	Unmodified	_CFHIYLMW_					0	0	0		ENSG00000159714|ENST00000565726|ZDHHC1;nc|ENSG00000159714|Q8WTX9|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.29150390625	2	556.756441	1111.49833	-1.1719	-0.00065247	2.7514	0.0015319	1.5795	0.00087938	556.7585040403865	65.6	0.37229	65.387	65.215	65.588	-0.21327					11	8	2	0	0	0	0.027866	1	7484	7484		33.493	0	1	64399			5249	6764	3123	3138	6914	6914					-0.05296022984089177
CFIFLLFPVL	10	Unmodified	_CFIFLLFPVL_					0	0	0		ENST00000360315.7_1_19:19616298-19616775:+|nuORF	ENST00000360315.7_1_19:19616298-19616775:+|nuORF	ENST00000360315.7_1_19:19616298-19616775:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.2274169921875	3	404.568085	1210.68242	-0.48981	-0.00019816	4.2185	0.0017067	3.7287	0.0015085	404.5697858534229	25.108	0.261	25.074	24.86	25.121	-0.034395					7	5	2	0	0	0	0.03519	1	1132	1132		18.262	3.5684	1	35263			5250	12762	3124	3139	6915	6915					0.08551068718293209
CFILILHLT	9	Unmodified	_CFILILHLT_					0	0	0		ENST00000465481.5_1_6:31633906-31635902:+|nuORF	ENST00000465481.5_1_6:31633906-31635902:+|nuORF	ENST00000465481.5_1_6:31633906-31635902:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3143920898438	2	536.814813	1071.61507	0.25658	0.00013774	4.2832	0.0022993	4.5398	0.002437	536.8169459616217	84.046	0.3919	83.877	83.66	84.052	-0.16916					15	8	2	0	0	0	0.024517	1	10171	10171		35.201	13.241	1	175770			5251	14784	3125	3140	6916	6916					0.08213038507346937
CFKMPGVLYC	10	Unmodified	_CFKMPGVLYC_					0	0	0			REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF	REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	580.8297119140625	2	580.768691	1159.52283	-0.79728	-0.00046303	1.3037	0.00075714	0.50641	0.00029411	580.7690066214266	47.623	0.24698	47.683	47.522	47.769	0.059097					10	7	2	0	0	0	0.03519	1	4735	4735		30.504	6.9809	1	217620	+		5252	30602	3126	3141	6917	6917					-0.05055130892833404
CFLISNITI	9	Unmodified	_CFLISNITI_					0	0	0		ENSG00000106701|ENST00000481272|FSD1L	ENSG00000106701|ENST00000481272|FSD1L	ENSG00000106701|ENST00000481272|FSD1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.32720947265625	2	512.280803	1022.54705	-0.30004	-0.0001537	-0.79408	-0.00040679	-1.0941	-0.0005605	512.2797472685651	96.286	0.12368	96.13	96.049	96.173	-0.15646					4	2	2	0	0	0	0.024541	1	11884	11884		11.511	0	1	19258			5253	2811	3127	3142	6918	6918					0.03668168856677312
CFLPPSKLTA	10	Unmodified	_CFLPPSKLTA_					0	0	0		ENST00000441843.5_1_13:44464405-44465735:+|nuORF	ENST00000441843.5_1_13:44464405-44465735:+|nuORF	ENST00000441843.5_1_13:44464405-44465735:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.791748046875	2	538.794078	1075.5736	-1.8988	-0.001023	-2.6717	-0.0014395	-4.5705	-0.0024625	538.7926998662635	37.698	1.1454	37.48	37.144	38.289	-0.21848					79	31	4	0	0	0	0.69662	1	3041	3041		67.494	9.2637	1	8078700			5254	14367	3128	3143	6919	6919					0.03883857747996444
CFLQFQNGKSL	11	Unmodified	_CFLQFQNGKSL_					0	0	0			REV__ENST00000479234.1_1_6:155143366-155146055:+|nuORF	REV__ENST00000479234.1_1_6:155143366-155146055:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.26202392578125	3	428.885024	1283.63324	-0.52353	-0.00022454	3.1167	0.0013367	2.5932	0.0011122	428.8866762165599	90.217	0.31682	90.062	89.864	90.181	-0.1552					11	7	2	0	0	0	0.024813	1	11035	11035		6.3209	0	1	98768	+		5255	33392	3129	3144	6920	6920					0.002771286914139637
CFLRYIEGE	9	Unmodified	_CFLRYIEGE_					0	0	0			REV__ENST00000316626.5_2_3:119812440-119812491:-|nuORF	REV__ENST00000316626.5_2_3:119812440-119812491:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.3241577148438	2	565.270967	1128.52738	-1.4506	-0.00082001	4.2717	0.0024147	2.8211	0.0015947	565.2730289698555	61.927	0.2468	61.99	61.806	62.052	0.062767					10	6	2	0	0	0	0.024477	1	7113	7113		27.882	0	1	277590	+		5256	30285	3130	3145	6921	6921					-0.03174207154074793
CFLTTFLFCL	10	Unmodified	_CFLTTFLFCL_					0	0	0		ENST00000482975.6_2_2:70519928-70519991:-|nuORF	ENST00000482975.6_2_2:70519928-70519991:-|nuORF	ENST00000482975.6_2_2:70519928-70519991:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.8612060546875	3	403.201185	1206.58172	2.1872	0.00088186	1.1365	0.00045824	3.3237	0.0013401	403.2011241754581	24.017	0.58214	24.095	23.692	24.274	0.077433					17	12	2	0	0	0	0.03519	1	914	914		29.17	10.908	1	92050			5257	15273	3131	3146	6922	6922					-0.013303313268579586
CFMLFLKY	8	Unmodified	_CFMLFLKY_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.297119140625	2	532.769017	1063.52348	-0.82897	-0.00044165	-3.8266	-0.0020387	-4.6555	-0.0024803	532.7668581066033	61.323	0.69273	61.066	60.771	61.464	-0.25725					38	16	3	0	0	0	0.027866	1	6855	6855		65.897	29.451	1	1834000	+		5258	22971	3132	3147	6923	6923					-0.005739681814930009
CFNLLDLP	8	Unmodified	_CFNLLDLP_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF;ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000466609.1_1_3:98378565-98379411:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7388916015625	2	467.738771	933.462989	-0.1683	-7.872E-05	0.22089	0.00010332	0.052588	2.4598E-05	467.7387765315901	23.558	0.71148	23.378	23.201	23.913	-0.17989					43	16	3	0	0	0	0.96719	1	943	943		42.474	1.9018	1	1705200			5259	6044;14816	3133	3148	6924	6924					-0.006403622402331166
CFRLVFRA	8	Unmodified	_CFRLVFRA_					0	0	0			REV__ENST00000439308.6_1_22:50683173-50683230:-|nuORF	REV__ENST00000439308.6_1_22:50683173-50683230:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7142333984375	2	506.281472	1010.54839	-0.0047698	-2.4149E-06	1.1108	0.00056236	1.106	0.00055994	506.28046751704943	32.018	1.3194	31.826	31.016	32.335	-0.19261					53	31	3	0	0	0	0.027866	1	2089	2089		33.516	18.651	1	72130	+		5260	32506	3134	3149	6925	6925					0.04353847736103944
CFTDDQSDPEV	11	Unmodified	_CFTDDQSDPEV_					0	0	0		ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	419.1658935546875	3	419.164292	1254.47105	-0.36715	-0.0001539	4.1207	0.0017273	3.7536	0.0015734	419.16599637928084	23.115	0.6369	22.933	22.603	23.24	-0.18184					39	13	5	0	0	0	0.91387	1	887	887		50.791	2.8317	1	1097700			5261	3187	3135	3150	6926	6926					-0.14600924572050644
CFTHAIINI	9	Unmodified	_CFTHAIINI_					0	0	0			REV__ENSG00000187747|ENST00000345043|OR52B6	REV__ENSG00000187747|ENST00000345043|OR52B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2706909179688	2	516.27077	1030.52699	-0.13397	-6.9165E-05	-0.96342	-0.00049739	-1.0974	-0.00056655	516.27052545192	51.059	1.5259	51.059	50.21	51.736	0					100	43	5	0	0	0	0.35646	1	5396	5396		68.787	0.30212	1	6683900	+		5262	27968	3136	3151	6927	6927					0.012944179167106995
CFTLLFML	8	Unmodified	_CFTLLFML_					0	0	0			REV__PTPRZ1-TSPAN33|1|fusion;REV__ENSG00000158457|ENST00000486685|TSPAN33	REV__PTPRZ1-TSPAN33|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.329345703125	2	494.255742	986.496932	-0.65758	-0.00032501	-2.9816	-0.0014737	-3.6392	-0.0017987	494.2539844958093	24.839	0.47988	24.621	24.415	24.895	-0.21813					17	10	3	0	0	0	0.027866	1	1100	1100		42.474	15.678	1	116590	+		5263	37421;25196	3137	3152	6928	6928					0.0031434292717449352
CFVLQYKC	8	Unmodified	_CFVLQYKC_					0	0	0			REV__ENST00000564542.5_2_16:22433513-22442873:-|nuORF	REV__ENST00000564542.5_2_16:22433513-22442873:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2898254394531	2	502.240624	1002.46669	-0.48806	-0.00024512	3.7407	0.0018787	3.2526	0.0016336	502.2420134764185	83.148	0.51451	83.148	82.878	83.393	0					23	11	3	0	0	0	0.027866	1	10402	10402		20.482	0	1	196980	+		5264	35251	3138	3153	6929	6929					-0.03444015738023154
CFYDGILL	8	Unmodified	_CFYDGILL_					0	0	0		ENSG00000159899|ENST00000342694|NPR2;nc|ENSG00000159899|P20594-2|NPR2	ENSG00000159899|ENST00000342694|NPR2	ENSG00000159899|ENST00000342694|NPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2412414550781	2	472.233322	942.45209	1.7459	0.00082448	-1.2585	-0.00059429	0.48744	0.00023019	472.2326000511403	24.095	0.40086	23.914	23.582	23.983	-0.18089					21	8	4	0	0	0	0.75307	1	987	987		62.978	20.582	1	620470			5265	6773	3139	3154	6930	6930					-0.02143764614504562
CFYQDSLTV	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))FYQDSLTV_	C(1)FYQDSLTV		C(77)FYQDSLTV		0	1	0		sp|P03198|DPOL_EBVB9DNApolymerasecatalyticsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF5PE=1SV=1	sp|P03198|DPOL_EBVB9DNApolymerasecatalyticsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF5PE=1SV=1	sp|P03198|DPOL_EBVB9DNApolymerasecatalyticsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF5PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.7546997070312	2	566.752607	1131.49066	0.22604	0.00012811	3.1605	0.0017912	3.3865	0.0019193	566.7542263813289	50.535	0.66591	50.354	50.094	50.76	-0.18071					43	17	3	0	0	0	0.29158	1	5141	5141		76.774	10.345	1	3759800			5266	37925	3140	3155	6931	6931	491				-0.06982503770655057
CFYYARKDGGL	11	Unmodified	_CFYYARKDGGL_					0	0	0		ENST00000509630.1_1_4:145573840-145606800:+|nuORF;nc|ENSG00000164161|Q96QV1-2|HHIP;ENSG00000164161|ENST00000296575|HHIP	ENST00000509630.1_1_4:145573840-145606800:+|nuORF	ENST00000509630.1_1_4:145573840-145606800:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	431.5512390136719	3	431.541257	1291.60194	-0.85395	-0.00036852	-1.0114	-0.00043647	-1.8654	-0.00080499	431.54101907213794	36.269	0.14433	36.226	36.136	36.28	-0.042454					5	3	2	0	0	0	0.024738	1	2851	2851		44.639	12.605	1	106640			5267	7226	3141	3156	6932	6932					-0.03219444342721545
CGALPHGAS	9	Unmodified	_CGALPHGAS_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2489318847656	2	406.689613	811.364672	-0.043777	-1.7804E-05	-2.5802	-0.0010493	-2.624	-0.0010671	406.6865652716723	87.962	0.51901	87.824	87.502	88.021	-0.13743					16	12	2	0	0	0	0.024386	1	10686	10686		18.324	10.093	1	38522			5268	5355	3142	3157	6933	6933					-0.048555457654060774
CGAPVLGALVC	11	Unmodified	_CGAPVLGALVC_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7608947753906	2	501.759181	1001.50381	5.3457	0.0026823	-1.579	-0.00079227	3.7667	0.00189	501.7582445986638	17.425	0.43121	17.485	17.323	17.754	0.06036					23	13	2	0	0	0	1.0533	1	143	143		24.203	1.1603	1	52286	+		5269	27316	3143	3158	6934	6934					0.0031165580775223134
CGAPVLGALVC	11	Unmodified	_CGAPVLGALVC_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.759181	1001.50381	3.5255	0.001769	0.24723	0.00012405	3.7727	0.001893	501.7592032086633	17.338	0.29758	17.338	17.201	17.498	0	-0.057188	0.00047521	NaN	24.203	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54845	+		5270	27316	3143	3158							0.0031165580775223134
CGAPVLGALVC	11	Unmodified	_CGAPVLGALVC_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.759181	1001.50381	0.3791	0.00019021	3.3892	0.0017006	3.7683	0.0018908	501.7607639719948	17.505	0.46802	17.362	17.183	17.651	-0.14278	-0.03279	0.0036282	NaN	24.203	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32884	+		5271	27316	3143	3158							0.0031165580775223134
CGAPVLGALVC	11	Unmodified	_CGAPVLGALVC_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	501.759181	1001.50381	5.3457	0.0026823	-1.579	-0.00079227	3.7667	0.00189	501.7582445986638	17.425	0.43121	17.485	17.323	17.754	0.06036	0.089978	-0.0013574	NaN	24.203	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52286	+		5272	27316	3143	3158							0.0031165580775223134
CGCFERTL	8	Unmodified	_CGCFERTL_					0	0	0		ENST00000322623.9_1_3:127799878-127800034:-|nuORF	ENST00000322623.9_1_3:127799878-127800034:-|nuORF	ENST00000322623.9_1_3:127799878-127800034:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2804260253906	2	464.704405	927.394258	0.73021	0.00033933	2.4825	0.0011536	3.2127	0.001493	464.7030889360609	88.418	0.76821	88.39	88.091	88.859	-0.027664					31	17	2	0	0	0	0.027866	1	11070	11070		23.042	16.307	1	43394			5273	12226	3144	3159	6935	6935					-0.07234349811562879
CGCKENCV	8	Unmodified	_CGCKENCV_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2624816894531	2	428.161516	854.308479	0.12564	5.3793E-05	-4.0126	-0.001718	-3.887	-0.0016642	428.1603667331117	90.137	0.2766	90.121	89.879	90.155	-0.016716					9	6	2	0	0	0	0.027866	1	11343	11343		18.324	0	1	133230			5274	8195	3145	3160	6936	6936					-0.12450257988746216
CGCKENCV	8	Unmodified	_CGCKENCV_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2621765136719	2	428.161516	854.308479	0.60324	0.00025828	3.8304	0.00164	4.4337	0.0018983	428.16372323350055	90.213	0.1991	90.075	89.917	90.116	-0.13824					7	4	2	0	0	0	0.027866	1	11016	11016		33.516	0	1	38791			5275	8195	3145	3160	6937	6937					-0.12450257988746216
CGFEPDQVKV	10	Unmodified	_CGFEPDQVKV_					0	0	0		ENSG00000155087|ENST00000285402|ODF1	ENSG00000155087|ENST00000285402|ODF1	ENSG00000155087|ENST00000285402|ODF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.270751953125	2	561.268424	1120.5223	-0.77983	-0.00043769	2.4659	0.001384	1.686	0.00094632	561.2702975131176	26.275	3.302	26.039	25.762	29.064	-0.23603					301	81	8	0	0	0	1.0719	1	1496	1496		36.447	2.2742	1	235830000			5276	6451	3146	3161	6938	6938					-0.03314511016696997
CGGDAGLLFL	10	Unmodified	_CGGDAGLLFL_					0	0	0			REV__ENST00000498520.1_1_2:206992517-206997685:-|nuORF	REV__ENST00000498520.1_1_2:206992517-206997685:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2690124511719	2	483.241678	964.468803	-0.24121	-0.00011656	-3.2111	-0.0015518	-3.4523	-0.0016683	483.24010056705913	83.562	0.33958	83.472	83.342	83.682	-0.090454					13	7	2	0	0	0	0.03519	1	10404	10404		63.306	22.734	1	108310	+		5277	20007	3147	3162	6939	6939					-0.014852637285684978
CGGDAGLLFL	10	Unmodified	_CGGDAGLLFL_					0	0	0			REV__ENST00000498520.1_1_2:206992517-206997685:-|nuORF	REV__ENST00000498520.1_1_2:206992517-206997685:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.241678	964.468803	-0.67462	-0.000326	-2.707	-0.0013081	-3.3816	-0.0016341	483.24002272209174	83.552	0.3877	83.552	83.435	83.823	0	0.056392	-4.8667E-05	NaN	63.306	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86170	+		5278	20007	3147	3162							-0.014852637285684978
CGGDAGLLFL	10	Unmodified	_CGGDAGLLFL_					0	0	0			REV__ENST00000498520.1_1_2:206992517-206997685:-|nuORF	REV__ENST00000498520.1_1_2:206992517-206997685:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.241678	964.468803	-1.0427	-0.0005039	-2.3372	-0.0011294	-3.3799	-0.0016333	483.2404096264335	83.437	0.42878	83.464	83.342	83.771	0.026558	-0.032266	0.00030877	NaN	63.306	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97238	+		5279	20007	3147	3162							-0.014852637285684978
CGGRSRGL	8	Unmodified	_CGGRSRGL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.2095031738281	2	403.208504	804.402455	0.15817	6.3777E-05	0.69798	0.00028143	0.85615	0.00034521	403.2086895591527	85.513	1.104	85.375	84.988	86.092	-0.13752					58	25	3	0	0	0	1.0472	1	10354	10354		29.842	1.5873	1	851540			5280	9369	3148	3163	6940	6940					-0.007570347799287447
CGGRSRGL	8	Unmodified	_CGGRSRGL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	403.208504	804.402455	2.2078	0.00089021	-1.6078	-0.00064829	0.59998	0.00024192	403.20778536984517	85.365	1.0833	85.365	84.958	86.042	0	0.011151	-0.0010726	NaN	29.842	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850150			5281	9369	3148	3163							-0.007570347799287447
CGGRSRGL	8	Unmodified	_CGGRSRGL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	403.208504	804.402455	0.23456	9.4575E-05	0.7539	0.00030398	0.98846	0.00039856	403.2086920850591	85.428	0.95365	85.37	84.98	85.934	-0.057617	0.016619	0.00083191	NaN	29.842	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	830780			5282	9369	3148	3163							-0.007570347799287447
CGGRSRGL	8	Unmodified	_CGGRSRGL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	403.208504	804.402455	1.5724	0.00063402	-0.87281	-0.00035192	0.69962	0.00028209	403.208036771124	85.284	1.123	85.309	84.995	86.118	0.025528	-0.044629	-0.0004799	NaN	29.842	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899830			5283	9369	3148	3163							-0.007570347799287447
CGGRSRGL	8	Unmodified	_CGGRSRGL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	403.208504	804.402455	0.91854	0.00037036	-0.060665	-2.4461E-05	0.85788	0.0003459	403.20835374873315	85.513	1.0997	85.317	84.927	86.027	-0.19508	-0.03637	0.00017502	NaN	29.842	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	873070			5284	9369	3148	3163							-0.007570347799287447
CGGRSRGL	8	Unmodified	_CGGRSRGL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	403.208504	804.402455	1.661	0.00066974	-0.93451	-0.0003768	0.72651	0.00029294	403.2080194913937	85.536	1.153	85.386	85.03	86.183	-0.14967	0.032008	-0.00052966	NaN	29.842	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	881690			5285	9369	3148	3163							-0.007570347799287447
CGHEARQGL	9	Unmodified	_CGHEARQGL_					0	0	0			REV__chr1:16978314-16978649|146|15.07|0.11|7.11|-|1|MFAP2,None|1	REV__chr1:16978314-16978649|146|15.07|0.11|7.11|-|1|MFAP2,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.73687744140625	2	485.7298	969.445048	-0.22805	-0.00011077	2.8818	0.0013998	2.6538	0.001289	485.73103754378656	72.643	0.91885	72.444	72.12	73.039	-0.19811					47	21	3	0	0	0	0.27161	1	8500	8500		79.451	2.6769	1	1997000	+		5286	19317	3149	3164	6941	6941					-0.040896844423627954
CGHGRGRSC	9	Unmodified	_CGHGRGRSC_					0	0	0			REV__ENSG00000235268|ENST00000450979|KDM4E	REV__ENSG00000235268|ENST00000450979|KDM4E	MSMS	OPSCC_40_ClassI_Rep-1	4	466.7008361816406	2	466.70052	931.386487	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.51	1	107.39	106.89	107.89	-0.1238								0	0	0	0.6291	1	13369	13369		35.618	3.6634	1		+		5287	28926	3150	3165	6942	6942					-0.08195064288486265
CGPELGGVTV	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GPELGGVTV_	C(1)GPELGGVTV		C(64)GPELGGVTV		0	1	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7385559082031	2	494.742042	987.469531	-0.25034	-0.00012385	-3.3624	-0.0016635	-3.6127	-0.0017874	494.7402494508613	53.547	1.4293	53.35	52.897	54.327	-0.19739					102	40	4	0	0	0	0.74632	1	5586	5586		64.207	8.7031	1	5583700	+		5288	26262	3151	3166	6943	6943	347				-0.024704690794692397
CGPLGLIK	8	Unmodified	_CGPLGLIK_					0	0	0		ENST00000273480.3_1_3:141464146-141464272:+|nuORF	ENST00000273480.3_1_3:141464146-141464272:+|nuORF	ENST00000273480.3_1_3:141464146-141464272:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.203857421875	2	400.738574	799.462595	0.97479	0.00039063	3.6492	0.0014624	4.624	0.001853	400.742318664428	25.398	0.12453	25.227	25.122	25.247	-0.17078					4	2	2	0	0	0	0.027866	1	1198	1198		35.201	19.564	1	16101			5289	11670	3152	3167	6944	6944					0.054842628305891594
CGPLVKGVL	9	Unmodified	_CGPLVKGVL_					0	0	0		ENST00000510398.1_1_4:5141502-5170068:+|nuORF;ENST00000512018.5_1_4:5053633-5141954:+|nuORF	ENST00000510398.1_1_4:5141502-5170068:+|nuORF	ENST00000510398.1_1_4:5141502-5170068:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2666931152344	2	443.264956	884.515359	0.90859	0.00040275	3.659	0.0016219	4.5676	0.0020247	443.2665079712088	85.712	1.1011	85.712	85.372	86.474	0					75	25	4	0	0	0	0.88411	1	10768	10768		33.516	8.0654	1	1179100			5290	15821	3153	3168	6945	6945					0.06848220893402868
CGRPAGLLL	9	Unmodified	_CGRPAGLLL_					0	0	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.274658203125	2	450.260205	898.505857	-1.3832	-0.00062281	2.2132	0.0009965	0.82995	0.00037369	450.2617665872435	92.34	0.69728	92.197	91.791	92.488	-0.14356					43	16	5	0	0	0	0.024386	1	11294	11294		33.516	4.366	1	551810	+		5291	24895	3154	3169	6946	6946					0.05254452607891835
CGRVMKKRR	9	Unmodified	_CGRVMKKRR_					0	0	0		ENST00000358731.8_2_5:70751498-70751573:+|nuORF	ENST00000358731.8_2_5:70751498-70751573:+|nuORF	ENST00000358731.8_2_5:70751498-70751573:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.328962	1132.64337	0.22871	0.00012975	0.86333	0.00048979	1.092	0.00061954	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.96322	1	11355	11355		27.882	0	1	18337000			5292	12721	3155	3170	6947	6947					0.08235457935643353
CGSFSSLSVL	10	Unmodified	_CGSFSSLSVL_					0	0	0		ENSG00000174130|ENST00000508254|TLR6;ENSG00000174125|ENST00000308979|TLR1	ENSG00000174130|ENST00000508254|TLR6;ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3135986328125	2	500.244418	998.474282	-0.25244	-0.00012628	-2.467	-0.0012341	-2.7195	-0.0013604	500.24359293840064	76.042	0.22849	75.874	75.703	75.932	-0.16854					8	5	2	0	0	0	0.03519	1	8986	8986		44.117	17.321	1	62682			5293	8442;8443	3156	3171	6948	6948					-0.02501584936726431
CGSGRRVPSL	10	Unmodified	_CGSGRRVPSL_					0	0	0			REV__ENST00000396623.7_1_8:67380526-67380562:+|nuORF	REV__ENST00000396623.7_1_8:67380526-67380562:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3141479492188	2	516.274375	1030.5342	0.29777	0.00015373	-2.1041	-0.0010863	-1.8064	-0.00093258	516.2713163923797	97.905	0.46416	97.915	97.684	98.148	0.010231					24	10	4	0	0	0	0.03519	1	12489	12489		23.523	0	1	89645	+		5294	31742	3157	3172	6949	6949					0.020151505171725148
CGSLVSMD	8	Unmodified	_CGSLVSMD_					0	0	0			REV__ENST00000560197.5_1_15:39160624-39178953:-|nuORF	REV__ENST00000560197.5_1_15:39160624-39178953:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.2486877441406	2	406.169864	810.325175	0.9718	0.00039471	-3.043	-0.001236	-2.0712	-0.00084125	406.167843164545	87.791	0.55283	87.756	87.489	88.042	-0.035355					27	13	3	0	0	0	0.027866	1	11061	11061		13.775	0	1	125090	+		5295	35140	3158	3173	6950	6950					-0.08757433831146955
CGSRPRLSSF	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GSRPRLSSF_	C(1)GSRPRLSSF		C(69)GSRPRLSSF		0	1	0			REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.787109375	2	583.790389	1165.56623	-0.98263	-0.00057365	-3.3609	-0.0019621	-4.3435	-0.0025357	583.7883971603766	65.881	1.1045	65.63	65.312	66.416	-0.25112					71	27	5	0	0	0	0.67616	1	7560	7560		68.846	8.9154	1	8035700	+		5296	35742	3159	3174	6951	6951	463				-0.009934817997191203
CHASGLHF	8	Unmodified	_CHASGLHF_					0	0	0			REV__ENST00000367843.7_1_1:168034877-168034916:+|nuORF	REV__ENST00000367843.7_1_1:168034877-168034916:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2110900878906	2	436.197605	870.380657	0.39701	0.00017317	-0.6079	-0.00026516	-0.21089	-9.199E-05	436.197263884645	99.308	1.5653	99.139	98.071	99.637	-0.16862					44	36	2	0	0	0	0.027866	1	12299	12299		37.028	18.704	1	92013	+		5297	31032	3160	3175	6952	6952					-0.05971839528501732
CHCNYSGGTN	10	Unmodified	_CHCNYSGGTN_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.23974609375	2	528.187108	1054.35966	1.2632	0.00066721	1.2376	0.00065367	2.5008	0.0013209	528.1879972043727	63.188	0.17767	63.242	63.09	63.267	0.054104					5	4	2	0	0	0	0.03519	1	7278	7278		2.7184	0	1	50013	+		5298	26222	3161	3176	6953	6953					-0.1653421769030956
CHDLIQATM	9	Unmodified	_CHDLIQATM_					0	0	0			REV__ENST00000262367.9_1_16:3900965-3929844:-|nuORF	REV__ENST00000262367.9_1_16:3900965-3929844:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2706909179688	2	516.23607	1030.45759	-0.067079	-3.4629E-05	-2.1351	-0.0011022	-2.2022	-0.0011369	516.2348381862017	51.124	0.40361	51.124	50.882	51.286	0					14	10	2	0	0	0	0.023417	1	5396	5396		68.787	18.762	1	125480	+		5299	29659	3162	3177	6954	6954					-0.05642409094343748
CHDLIQATM	9	Unmodified	_CHDLIQATM_					0	0	0			REV__ENST00000262367.9_1_16:3900965-3929844:-|nuORF	REV__ENST00000262367.9_1_16:3900965-3929844:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.23607	1030.45759	0.63427	0.00032743	-1.931	-0.00099683	-1.2967	-0.0006694	516.2332783781002	51.076	0.26963	50.964	50.859	51.129	-0.11163	-0.072428	-5.7434E-05	NaN	68.787	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104220	+		5300	29659	3162	3177							-0.05642409094343748
CHFSQQMDS	9	Unmodified	_CHFSQQMDS_					0	0	0			REV__ENST00000282488.11_1_3:151986566-151986734:+|nuORF	REV__ENST00000282488.11_1_3:151986566-151986734:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7533569335938	2	541.705134	1081.39571	-1.3538	-0.00073334	-2.4889	-0.0013482	-3.8426	-0.0020816	541.7049049433544	38.351	0.32683	38.133	37.926	38.253	-0.21848					13	9	2	0	0	0	0.024539	1	3153	3153		27.882	0	1	202340	+		5301	29899	3163	3178	6955	6955					-0.14172760513474714
CHFVVVVCVL	10	Unmodified	_CHFVVVVCVL_					0	0	0		ENST00000352732.9_1_15:89738905-89739064:+|nuORF	ENST00000352732.9_1_15:89738905-89739064:+|nuORF	ENST00000352732.9_1_15:89738905-89739064:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.2979125976562	2	559.298473	1116.58239	-0.34066	-0.00019053	3.5385	0.0019791	3.1978	0.0017885	559.3007485580194	97.818	0.52832	97.653	97.306	97.834	-0.1652					19	11	2	0	0	0	0.88914	2	12081	12081;12106		54.765	10.387	1	158850			5302	12607	3164	3179	6956;6957	6956					0.028765081128312886
CHFVVVVCVL	10	Unmodified	_CHFVVVVCVL_					0	0	0		ENST00000352732.9_1_15:89738905-89739064:+|nuORF	ENST00000352732.9_1_15:89738905-89739064:+|nuORF	ENST00000352732.9_1_15:89738905-89739064:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.298473	1116.58239	0.70844	0.00039623	2.5489	0.0014256	3.2574	0.0018219	559.2999529198356	97.779	0.51329	97.642	97.377	97.89	-0.13671	-0.0028997	6.9834E-05	NaN	54.765	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139850			5303	12607	3164	3179							0.028765081128312886
CHGSCYCK	8	Unmodified	_CHGSCYCK_					0	0	0			REV__ENSG00000107779|ENST00000372037|BMPR1A	REV__ENSG00000107779|ENST00000372037|BMPR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7605895996094	2	450.661683	899.308814	-0.28038	-0.00012636	0.12059	5.4343E-05	-0.1598	-7.2014E-05	450.6594836352123	38.848	0.28909	38.75	38.591	38.88	-0.098755					13	7	3	0	0	0	0.027866	1	3289	3289		1.2052	0	1	178090	+		5304	21685	3165	3180	6958	6958					-0.14486838268896918
CHHFLRRRTIA	11	Unmodified	_CHHFLRRRTIA_					0	0	0		ENST00000535022.1_1_12:127630221-127630377:-|nuORF;ENST00000541419.1_1_12:127629727-127631001:-|nuORF	ENST00000535022.1_1_12:127630221-127630377:-|nuORF	ENST00000535022.1_1_12:127630221-127630377:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2215576171875	3	470.59469	1408.76224	0.5294	0.00024913	-0.98171	-0.00046199	-0.45231	-0.00021286	470.59413092928173	68.185	0.63934	67.951	67.636	68.275	-0.23376					31	15	3	0	0	0	0.024828	1	7889	7889		24.232	14.586	1	278810			5305	16343	3166	3181	6959	6959					0.07420948164849506
CHHWHTQYSNN	11	Unmodified	_CHHWHTQYSNN_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.2596435546875	3	476.195032	1425.56327	-0.09332	-4.4439E-05	3.1094	0.0014807	3.016	0.0014362	476.5311256140805	43.612	0.18511	43.504	43.394	43.579	-0.10848					7	4	2	0	0	0	0.024856	1	4019	4019		9.2118	0	1	115860			5306	4481	3167	3182	6960	6960					-0.13249356924484346
CHICRYGVK	9	Unmodified	_CHICRYGVK_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7688598632812	2	539.767871	1077.52119	1.0534	0.00056858	1.5	0.00080967	2.5534	0.0013783	539.768267798101	18.957	1.449	18.957	18.333	19.782	0					61	29	3	0	0	0	0.67308	1	355	355		47.916	3.7988	1	169330	+		5307	26047	3168	3183	6961	6961					-0.014470038665876928
CHKEVFSLT	9	Unmodified	_CHKEVFSLT_					0	0	0			REV__ENST00000429519.5_1_4:74980082-74980279:+|nuORF	REV__ENST00000429519.5_1_4:74980082-74980279:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.2672119140625	2	532.265684	1062.51682	0.060839	3.2382E-05	3.3795	0.0017988	3.4404	0.0018312	532.2672844890931	71.88	0.67848	71.592	71.234	71.912	-0.28858					40	17	3	0	0	0	0.59099	1	8687	8687		53.351	2.016	1	1308100	+		5308	32338	3169	3184	6962	6962					-0.011941898085069624
CHKWLASPQ	9	Unmodified	_CHKWLASPQ_					0	0	0			REV__ENST00000522293.5_1_5:179225178-179226553:-|nuORF	REV__ENST00000522293.5_1_5:179225178-179226553:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.8153686523438	2	535.266019	1068.51748	-0.30631	-0.00016396	-1.8444	-0.00098723	-2.1507	-0.0011512	535.2638485914532	71.499	0.32941	71.237	71.033	71.363	-0.26199					20	7	4	0	0	0	0.024527	1	8373	8373		31.53	14.165	1	170930	+		5309	34336	3170	3185	6963	6963					-0.014033503688096971
CHKYLIGV	8	Unmodified	_CHKYLIGV_					0	0	0		ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL	ENSG00000120334|ENST00000682279|CENPL	ENSG00000120334|ENST00000682279|CENPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2443542480469	2	466.754756	931.494958	0.69988	0.00032667	1.6446	0.00076763	2.3445	0.0010943	466.7557500951424	32.529	0.33804	32.592	32.428	32.766	0.062889					13	8	2	0	0	0	0.027866	1	2234	2234		13.775	0	1	64969			5310	3810	3171	3186	6964	6964					0.02647050233599657
CHLCGLILSV	10	Unmodified	_CHLCGLILSV_					0	0	0			REV__ENST00000336034.8_1_19:42703119-42703434:-|nuORF	REV__ENST00000336034.8_1_19:42703119-42703434:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.80224609375	2	529.28028	1056.54601	-1.239	-0.0006558	2.0814	0.0011016	0.84232	0.00044582	529.2820091503581	61.849	1.0412	61.849	61.108	62.149	0					76	27	4	0	0	0	0.03519	1	7156	7156		37.159	0	1	3810200	+		5311	30541	3172	3187	6965	6965					0.019996312161310925
CHLILHKII	9	Unmodified	_CHLILHKII_					0	0	0		nc|ENSG00000204519|Q7Z340-3|ZNF551;nc|ENSG00000204519|Q7Z340-2|ZNF551;ENSG00000204519|ENST00000282296|ZNF551	nc|ENSG00000204519|Q7Z340-3|ZNF551	nc|ENSG00000204519|Q7Z340-3|ZNF551	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2748413085938	2	545.333704	1088.65286	-1.1144	-0.00060775	-1.6638	-0.00090734	-2.7783	-0.0015151	545.8352293426582	77.849	0.37472	77.865	77.698	78.073	0.015907					10	8	2	0	0	0	0.022799	1	9538	9538		83.287	20.309	1	54474			5312	10350	3173	3188	6966	6966					0.11207549492814906
CHLLIRSTF	9	Unmodified	_CHLLIRSTF_					0	0	0			REV__ENST00000444125.1_1_9:132104252-132109740:+|nuORF	REV__ENST00000444125.1_1_9:132104252-132109740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2753295898438	2	545.297319	1088.58008	-0.98112	-0.000535	2.4305	0.0013253	1.4494	0.00079034	545.2984690003409	77.623	0.1227	77.636	77.533	77.656	0.013504					4	2	2	0	0	0	0.023181	1	9514	9514		82.305	12.677	1	163730	+		5313	32586	3174	3189	6967	6967					0.0393379569939043
CHLLIVLHL	9	Unmodified	_CHLLIVLHL_					0	0	0			REV__ENST00000435675.5_1_2:216198165-216200773:+|nuORF	REV__ENST00000435675.5_1_2:216198165-216200773:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7738037109375	2	530.82043	1059.62631	-0.78356	-0.00041593	0.90657	0.00048123	0.12302	6.5299E-05	530.820904789742	57.367	0.47375	57.2	56.932	57.406	-0.1672					20	12	2	0	0	0	0.024475	1	6228	6228		29.842	0	1	217870	+		5314	32443	3175	3190	6968	6968					0.09887860601497778
CHLYRQTGNWI	11	Unmodified	_CHLYRQTGNWI_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.76422119140625	3	464.227673	1389.66119	-0.31031	-0.00014405	2.5465	0.0011822	2.2362	0.0010381	464.2288149023926	21.942	0.28528	21.751	21.662	21.947	-0.19072					8	5	2	0	0	0	0.024779	1	720	720		27.644	9.8108	1	29101	+		5315	22090	3176	3191	6969	6969					-0.01805548328502482
CHMLLHKS	8	Unmodified	_CHMLLHKS_					0	0	0			REV__ENST00000492618.5_1_7:56128589-56129482:+|nuORF	REV__ENST00000492618.5_1_7:56128589-56129482:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7663879394531	2	484.743865	967.473177	-0.23459	-0.00011372	-1.9425	-0.00094163	-2.1771	-0.0010553	484.7425555748297	47.307	0.1806	47.307	47.181	47.361	0					7	4	2	0	0	0	0.027866	1	4718	4718		21.702	13.471	1	64285	+		5316	33745	3177	3192	6970	6970					-0.011860777866331773
CHNNERELK	9	Unmodified	_CHNNERELK_					0	0	0			REV__ENST00000444990.5_1_2:243030866-243058384:+|nuORF	REV__ENST00000444990.5_1_2:243030866-243058384:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.8297729492188	2	571.772197	1141.52984	-0.56892	-0.00032529	2.032	0.0011619	1.4631	0.00083656	571.7735679881379	41.826	0.16279	41.826	41.758	41.921	0					5	4	2	0	0	0	0.024495	1	3807	3807		34.173	0	1	37520	+		5317	32602	3178	3193	6971	6971					-0.03526358696421994
CHPHLHAL	8	Unmodified	_CHPHLHAL_					0	0	0			REV__ENST00000593832.1_1_19:17690896-17691259:+|nuORF	REV__ENST00000593832.1_1_19:17690896-17691259:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2792663574219	2	464.234522	926.45449	-0.30545	-0.0001418	-3.8902	-0.001806	-4.1956	-0.0019478	464.23254061211355	52.307	0.50542	52.307	52.049	52.554	0					20	12	2	0	0	0	0.027866	1	5567	5567		10.185	0	1	224370	+		5318	35772	3179	3194	6972	6972					-0.011678713661922302
CHPLEIVPR	9	Unmodified	_CHPLEIVPR_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8168334960938	2	532.289494	1062.56443	-0.17836	-9.4941E-05	-3.9591	-0.0021074	-4.1375	-0.0022024	532.2872810534734	86.968	0.50771	86.781	86.429	86.936	-0.18695					21	11	2	0	0	0	0.024405	1	10557	10557		44.117	13.613	1	132030	+		5319	28078	3180	3195	6973	6973					0.03565509182340065
CHQERPYFQSW	11	Unmodified	_CHQERPYFQSW_					0	0	0		ENSG00000113196|ENST00000231121|HAND1	ENSG00000113196|ENST00000231121|HAND1	ENSG00000113196|ENST00000231121|HAND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3296813964844	3	494.219066	1479.63537	-0.40673	-0.00020101	-0.10811	-5.3432E-05	-0.51484	-0.00025444	494.21891013798535	24.391	0.29747	24.176	23.999	24.296	-0.21511					10	6	2	0	0	0	0.02484	1	1073	1073		22.562	9.6041	1	55645			5320	3266	3181	3196	6974	6974					-0.08526442570791914
CHRKELSA	8	Unmodified	_CHRKELSA_					0	0	0		ENST00000514030.1_1_5:122153007-122163181:+|nuORF;nc|ENSG00000205302|O60749-2|SNX2;ENSG00000205302|ENST00000379516|SNX2	ENST00000514030.1_1_5:122153007-122163181:+|nuORF	ENST00000514030.1_1_5:122153007-122163181:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2878112792969	2	472.242544	942.470534	0.21096	9.9625E-05	0.26665	0.00012593	0.47761	0.00022555	472.2427139686584	94.209	0.41089	94.209	94.15	94.561	-0.00022888					13	9	2	0	0	0	0.027866	1	11955	11955		47.916	5.4411	1	121340			5321	10414	3182	3197	6975	6975					-0.003002099199420627
CHRLPVTL	8	Unmodified	_CHRLPVTL_					0	0	0			REV__ENSG00000114923|ENST00000358055|SLC4A3	REV__ENSG00000114923|ENST00000358055|SLC4A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.75018310546875	2	469.765655	937.516756	0.09681	4.5478E-05	-1.1055	-0.00051933	-1.0087	-0.00047385	469.76582324425004	54.162	0.30692	54.162	53.907	54.214	0					10	8	2	0	0	0	0.027866	1	5887	5887		35.201	0	1	69163	+		5322	22155	3183	3198	6976	6976					0.04549854982155921
CHRSLGPRH	9	Unmodified	_CHRSLGPRH_					0	0	0			REV__nc|ENSG00000111077|Q63HR2-5|TNS2	REV__nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7713623046875	2	531.772334	1061.53011	-1.5846	-0.00084263	0.070072	3.7262E-05	-1.5145	-0.00080537	531.7723135123027	24.693	0.66891	24.646	24.398	25.067	-0.047148					21	14	2	0	0	0	0.62163	1	1085	1085		51.335	0	1	1108000	+		5323	21892	3184	3199	6977	6977					0.0018110581409018778
CHSNWCEM	8	Unmodified	_CHSNWCEM_					0	0	0		L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|102|2|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|306|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|297|3|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|178|1|anti-sense;chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|18;chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|16;chr15:53523322-53540662|353|34.83|0.17|7.69|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|18;chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|18;chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|17;chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|18	L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|102|2|anti-sense	L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|102|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.323974609375	2	505.169872	1008.32519	-0.55601	-0.00028088	2.0478	0.0010345	1.4917	0.00075358	505.1678942176721	79.153	0.20773	78.98	78.861	79.069	-0.17226					9	4	3	0	0	0	0.027866	1	9765	9765		8.2313	0	1	59161			5324	288	3185	3200	6978	6978					-0.17863757102793443
CHSSVYIWP	9	Unmodified	_CHSSVYIWP_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	546.252577	1090.4906	-0.41371	-0.00022599	4.1573	0.0022709	3.7436	0.002045	546.2543640028656	87.213	0.71455	87.076	86.787	87.502	-0.13734					24	16	2	0	0	0	0.024436	1	10590	10590		23.042	0	1	71582			5325	2996	3186	3201	6979	6979					-0.051024589799908426
CHSTGAGKLR	10	Unmodified	_CHSTGAGKLR_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3114624023438	2	515.26655	1028.51855	1.136	0.00058532	-2.1283	-0.0010966	-0.99235	-0.00051132	515.2655802461313	20.12	0.18796	19.92	19.801	19.988	-0.2001					5	3	2	0	0	0	0.03519	1	495	495		64.207	8.7031	1	23457			5326	3254	3187	3202	6980	6980					0.00542864000112786
CHVGIMACL	9	Unmodified	_CHVGIMACL_					0	0	0			REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.27972412109375	2	473.719001	945.423449	-0.067368	-3.1914E-05	0.34629	0.00016404	0.27892	0.00013213	473.71914734608356	31.617	0.40364	31.432	31.245	31.649	-0.18503					16	9	3	0	0	0	0.024475	1	2094	2094		14.664	10.348	1	95080	+		5327	34514	3188	3203	6981	6981					-0.05144528786945557
CHVGIMACL	9	Unmodified	_CHVGIMACL_					0	0	0			REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.719001	945.423449	0.19826	9.3921E-05	-0.6618	-0.00031351	-0.46353	-0.00021958	473.71864139618054	31.6	0.44609	31.6	31.343	31.789	0	0.1413	-0.00015007	NaN	8.8223	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113410	+		5328	34514	3188	3203							-0.05144528786945557
CHVGIMACL	9	Unmodified	_CHVGIMACL_					0	0	0			REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.719001	945.423449	0.23405	0.00011087	-0.68092	-0.00032257	-0.44687	-0.00021169	473.7185949053425	31.514	0.4453	31.525	31.257	31.702	0.011797	0.066278	-0.0001682	NaN	8.8223	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147200	+		5329	34514	3188	3203							-0.05144528786945557
CHVGIMACL	9	Unmodified	_CHVGIMACL_					0	0	0			REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	473.719001	945.423449	0.10307	4.8824E-05	-0.38277	-0.00018132	-0.2797	-0.0001325	473.718546852633	31.189	0.32673	31.258	31.04	31.366	0.068962	-0.20115	0.00011429	NaN	8.8223	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77613	+		5330	34514	3188	3203							-0.05144528786945557
CHVSDVEVQ	9	Unmodified	_CHVSDVEVQ_					0	0	0		nc|ENSG00000161265|Q8WU68|U2AF1L4	nc|ENSG00000161265|Q8WU68|U2AF1L4	nc|ENSG00000161265|Q8WU68|U2AF1L4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.8231201171875	2	508.229299	1014.44404	-0.12919	-6.5658E-05	-2.6688	-0.0013564	-2.798	-0.001422	508.2278835586702	103.57	3.8021	103.58	101.29	105.09	0.0054245					154	97	2	0	0	0	0.024323	1	12969	12969		35.618	7.736	1	287740			5331	18431	3189	3204	6982	6982					-0.06259943601924078
CHWCCPVGKV	10	Unmodified	_CHWCCPVGKV_					0	0	0			REV__ENSG00000113262|ENST00000517717|GRM6;REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	REV__ENSG00000113262|ENST00000517717|GRM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.8033447265625	2	566.248457	1130.48236	0.49965	0.00028292	-4.2779	-0.0024223	-3.7782	-0.0021394	566.245996155349	78.292	0.51197	78.061	77.791	78.303	-0.23141					18	11	2	0	0	0	0.03519	1	9339	9339		29.15	1.2673	1	69261	+		5332	22052;27280	3190	3205	6983	6983					-0.07766052492615927
CHYEGADN	8	Unmodified	_CHYEGADN_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.23712158203125	2	454.663792	907.313031	0.048266	2.1945E-05	-2.5946	-0.0011797	-2.5464	-0.0011577	454.6625882668892	59.816	1.3341	59.567	59.05	60.384	-0.24841					50	33	2	0	0	0	0.027866	1	6545	6545		3.6843	0	1	228200	+		5333	24228	3191	3206	6984	6984					-0.14433334249974905
CHYEPILF	8	Unmodified	_CHYEPILF_					0	0	0			REV__ENSG00000138686|ENST00000264499|BBS7	REV__ENSG00000138686|ENST00000264499|BBS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2359008789062	2	511.244221	1020.47389	-0.10702	-5.4714E-05	1.708	0.00087322	1.601	0.0008185	511.2452036274955	57.872	0.71687	57.682	57.112	57.829	-0.19018					30	18	2	0	0	0	0.027866	1	6283	6283		35.201	16.097	1	650590	+		5334	23886	3192	3207	6985	6985					-0.03552959865930916
CICCSGQPSAN	11	Unmodified	_CICCSGQPSAN_					0	0	0			REV__nc|ENSG00000115459|Q96FG2-5|ELMOD3	REV__nc|ENSG00000115459|Q96FG2-5|ELMOD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7537841796875	2	541.706819	1081.39909	-1.0414	-0.00056416	1.766	0.00095663	0.72451	0.00039247	541.7052421741465	38.231	0.19615	38.051	37.939	38.136	-0.17929					7	5	2	0	0	0	0.024761	1	3142	3142		15.333	0	1	156820	+		5335	36585	3193	3208	6986	6986					-0.13835833731104685
CICPVNKSL	9	Carbamidomethyl (C)	_CIC(Carbamidomethyl (C))PVNKSL_	C(0.024)IC(0.976)PVNKSL		C(-16)IC(16)PVNKSL		0	1	0			REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF	REV__ENST00000560936.2_1_15:60688058-60688154:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7686767578125	2	517.262087	1032.50962	-0.40571	-0.00020986	-2.4674	-0.0012763	-2.8731	-0.0014862	517.2606635404776	52.133	0.55456	52.133	51.836	52.391	0					26	14	3	0	0	0	0.023239	1	5595	5595		84.916	16.129	2	283910	+		5336	35159	3194	3209	6987	6987	458				-0.005332456805717811
CIDTHVIEILI	11	Unmodified	_CIDTHVIEILI_					0	0	0		ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.55487060546875	3	423.568813	1267.68461	0.022216	9.4098E-06	-4.1409	-0.001754	-4.1187	-0.0017446	423.9004992539551	24.025	0.39266	23.845	23.651	24.043	-0.17989					11	8	2	0	0	0	0.024748	1	999	999		37.508	15.728	1	30936			5337	11048	3195	3210	6988	6988					0.061474526654365036
CIELAERKP	9	Unmodified	_CIELAERKP_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENST00000577583.1_1_17:27807410-27838022:+|nuORF;nc|ENSG00000160551|Q7L7X3-2|TAOK1;ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2;ENSG00000160551|ENST00000261716|TAOK1;ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8239135742188	2	529.786784	1057.55902	-0.40702	-0.00021563	-1.2119	-0.00064207	-1.619	-0.0008577	529.7857393777181	61.285	0.43787	61.06	60.862	61.3	-0.2246					36	11	4	0	0	0	0.024523	1	7092	7092		15.642	0	1	1278400			5338	6126;18378;6820;4858	3196	3211	6989	6989					0.03253785599895309
CIELAERKP	9	Unmodified	_CIELAERKP_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENST00000577583.1_1_17:27807410-27838022:+|nuORF;nc|ENSG00000160551|Q7L7X3-2|TAOK1;ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2;ENSG00000160551|ENST00000261716|TAOK1;ENSG00000135090|ENST00000392533|TAOK3;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.786784	1057.55902	-0.52597	-0.00027865	-0.81345	-0.00043095	-1.3394	-0.0007096	529.785608925752	60.939	0.48641	61.01	60.79	61.276	0.071125	-0.024986	0.00025527	NaN	26.693	44	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1323500			5339	6126;18378;6820;4858	3196	3211							0.03253785599895309
CIGCIHID	8	Unmodified	_CIGCIHID_					0	0	0			REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64	REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.5264892578125	2	437.201499	872.388444	0.40111	0.00017536	-1.3054	-0.00057072	-0.9043	-0.00039536	437.20087232083114	53.249	0.42721	52.991	52.723	53.15	-0.25838					17	10	2	0	0	0	0.027866	1	5531	5531		13.775	6.085	1	107750	+		5340	19992	3197	3212	6990	6990					-0.052854483232636085
CIIKGLHTD	9	Unmodified	_CIIKGLHTD_					0	0	0			REV__nc|ENSG00000197566|Q9P2J8-2|ZNF624	REV__nc|ENSG00000197566|Q9P2J8-2|ZNF624	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2873229980469	2	500.268227	998.521901	-0.19175	-9.5924E-05	-3.0084	-0.001505	-3.2002	-0.0016009	500.26657117797134	55.93	0.69334	55.774	55.48	56.173	-0.15601					38	18	3	0	0	0	0.024294	1	6157	6157		45.952	0	1	2053400	+		5341	28320	3198	3213	6991	6991					0.022581140540978595
CIIVGITLVF	10	Unmodified	_CIIVGITLVF_					0	0	0			REV__ENSG00000118434|ENST00000237201|SPACA1	REV__ENSG00000118434|ENST00000237201|SPACA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7632446289062	2	539.322471	1076.63039	-0.80551	-0.00043443	2.963	0.001598	2.1575	0.0011636	539.3243942981519	31.633	0.27874	31.645	31.424	31.702	0.011797					8	6	2	0	0	0	0.03519	1	2085	2085		45.952	20.502	1	47110	+		5342	22404	3199	3214	6992	6992					0.09513905304538639
CIIVNNESI	9	Unmodified	_CIIVNNESI_					0	0	0			REV__CON__Q28085	REV__CON__Q28085	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7580261230469	2	502.757692	1003.50083	1.2495	0.0006282	-2.025	-0.0010181	-0.77545	-0.00038986	502.7564312011924	37.141	0.64504	37.141	36.805	37.45	0					43	16	4	0	0	0	0.39228	1	3015	3015		66.429	7.6473	1	2442200	+	+	5343	19570	3200	3215	6993	6993					-0.0007789604542267625
CIKRTQSNR	9	Unmodified	_CIKRTQSNR_					0	0	0			REV__chr22:18169939-18170815|127|20.5|0.79|4.7|+|1|USP18,None|1	REV__chr22:18169939-18170815|127|20.5|0.79|4.7|+|1|USP18,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.8300170898438	2	553.298381	1104.58221	0.34488	0.00019082	3.4425	0.0019047	3.7874	0.0020956	553.300771477594	88.652	0.51115	88.652	88.383	88.894	0					20	11	3	0	0	0	0.024381	1	11192	11192		37.159	1.5408	1	88099	+		5344	19424	3201	3216	6994	6994					0.034102244371979396
CIKTGACRVE	10	Unmodified	_CIKTGACRVE_					0	0	0		ENSG00000187905|ENST00000442047|LRRC74B	ENSG00000187905|ENST00000442047|LRRC74B	ENSG00000187905|ENST00000442047|LRRC74B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.28369140625	2	540.270444	1078.52633	-1.0598	-0.00057259	3.755	0.0020287	2.6952	0.0014561	540.2724104805136	42.066	0.48812	41.835	41.651	42.139	-0.2303					20	13	2	0	0	0	0.03519	1	3738	3738		32.751	11.804	1	309310			5345	9673	3202	3217	6995	6995					-0.009787447946337124
CILEKRLLRRS	11	Unmodified	_CILEKRLLRRS_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7999267578125	3	462.950251	1385.82892	0.026332	1.219E-05	3.152	0.0014592	3.1783	0.0014714	462.9519445055515	103.28	0.51463	103.28	103.05	103.57	0.0054245					26	11	3	0	0	0	0.024726	1	13200	13200		15.337	7.6581	1	152680			5346	9569	3203	3218	6996	6996					0.15144138936079798
CILEKRLLRRS	11	Unmodified	_CILEKRLLRRS_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	462.950251	1385.82892	0.33235	0.00015386	3.226	0.0014935	3.5584	0.0016473	462.9517757361048	103.4	0.45278	103.27	103.07	103.52	-0.12724	-0.052157	-0.00010267	NaN	15.337	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134160			5347	9569	3203	3218							0.15144138936079798
CILEKRLLRRS	11	Unmodified	_CILEKRLLRRS_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	462.950251	1385.82892	-0.23898	-0.00011063	3.7581	0.0017398	3.5191	0.0016292	462.95214472153475	103.42	0.47859	103.29	103.09	103.57	-0.12783	-0.031107	0.00063624	NaN	15.337	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120400			5348	9569	3203	3218							0.15144138936079798
CILEKRLLRRS	11	Unmodified	_CILEKRLLRRS_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	462.950251	1385.82892	0.30162	0.00013963	3.1627	0.0014642	3.4643	0.0016038	462.9517386389469	103.56	0.51174	103.39	103.12	103.63	-0.17034	0.066422	-0.00019064	NaN	15.337	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130670			5349	9569	3203	3218							0.15144138936079798
CILSALAAGLT	11	Unmodified	_CILSALAAGLT_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.8179931640625	2	516.791535	1031.56852	-0.36196	-0.00018706	-0.36825	-0.00019031	-0.73021	-0.00037737	517.2927497453845	67.371	0.7121	67.133	66.796	67.508	-0.23814					23	16	2	0	0	0	0.024732	1	7753	7753		32.812	0	1	362340			5350	9292	3204	3219	6997	6997					0.053995538853769176
CILSLEARAF	10	Unmodified	_CILSLEARAF_					0	0	0		ENST00000515415.5_1_5:57755119-57755311:-|nuORF	ENST00000515415.5_1_5:57755119-57755311:-|nuORF	ENST00000515415.5_1_5:57755119-57755311:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7828979492188	2	561.802434	1121.59032	-0.49738	-0.00027943	0.8211	0.00046129	0.32372	0.00018187	561.8028538440147	47.06	0.35818	46.867	46.678	47.036	-0.19387					14	9	2	0	0	0	0.03519	1	4545	4545		31.53	15.057	1	129870			5351	15900	3205	3220	6998	6998					0.03438358633934513
CILVLVSLM	9	Unmodified	_CILVLVSLM_					0	0	0			REV__ENST00000261716.7_1_17:27876345-27876420:+|nuORF	REV__ENST00000261716.7_1_17:27876345-27876420:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.80010986328125	2	495.789949	989.565346	-0.24486	-0.0001214	-1.6032	-0.00079487	-1.8481	-0.00091627	495.78907977484147	94.497	0.71742	94.349	94.169	94.886	-0.14771					22	16	2	0	0	0	0.024466	1	11704	11704		33.516	9.3128	1	206790	+		5352	29633	3206	3221	6999	6999					0.0701458750703523
CINMPAPLL	9	Unmodified	_CINMPAPLL_					0	0	0			REV__ENST00000357258.8_2_3:114107876-114219215:-|nuORF	REV__ENST00000357258.8_2_3:114107876-114219215:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2820129394531	2	486.256274	970.497995	-0.32266	-0.0001569	2.3999	0.001167	2.0772	0.0010101	486.25590200149117	89.517	0.54586	89.517	89.228	89.774	0					23	12	3	0	0	0	0.024325	1	11264	11264		60.294	10.269	1	105280	+		5353	30825	3207	3222	7000	7000					0.011565572960762438
CINSCSLWF	9	Unmodified	_CINSCSLWF_					0	0	0			REV__ENST00000167106.8_2_14:77248792-77249218:+|nuORF	REV__ENST00000167106.8_2_14:77248792-77249218:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.8001708984375	2	536.733163	1071.45177	-0.12394	-6.652E-05	2.1096	0.0011323	1.9857	0.0010658	536.734211173078	54.889	1.8337	54.683	53.849	55.682	-0.20613					92	50	3	0	0	0	0.024506	1	5917	5917		16.473	0	1	583570	+		5354	29277	3208	3223	7001	7001					-0.08109507606013722
CIRGIRAYVAP	11	Unmodified	_CIRGIRAYVAP_					0	0	0			REV__nc|ENSG00000001617|Q13275-2|SEMA3F	REV__nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2054138183594	3	406.897375	1217.6703	0.68958	0.00028059	1.005	0.00040892	1.6945	0.00068951	406.8978891528048	22.786	0.5122	22.597	22.374	22.886	-0.18894					12	10	2	0	0	0	0.024792	1	842	842		30.569	21.357	1	28108	+		5355	19760	3209	3224	7002	7002					0.07016845027806085
CIRLSRSM	8	Unmodified	_CIRLSRSM_					0	0	0			REV__ENST00000456853.1_1_3:29628670-29781292:+|nuORF	REV__ENST00000456853.1_1_3:29628670-29781292:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2374267578125	2	483.254597	964.494641	-0.68347	-0.00033029	1.9467	0.00094075	1.2632	0.00061046	483.2550248419433	41.107	0.61136	40.876	40.624	41.235	-0.23029					43	15	4	0	0	0	0.027866	1	3610	3610		18.324	0	1	1276500	+		5356	32799	3210	3225	7003	7003					0.010973072420824792
CIRNSSTK	8	Unmodified	_CIRNSSTK_					0	0	0		ENST00000510204.5_1_4:2834043-2834788:+|nuORF;ENST00000515737.5_1_4:2825262-2835558:+|nuORF;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-3|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2	ENST00000510204.5_1_4:2834043-2834788:+|nuORF	ENST00000510204.5_1_4:2834043-2834788:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.7816467285156	2	454.734551	907.45455	-0.3178	-0.00014451	-3.3721	-0.0015334	-3.6899	-0.0016779	454.7326242135553	41.549	0.31313	41.321	41.121	41.434	-0.2278					11	7	2	0	0	0	0.027866	1	3679	3679		14.137	0	1	50952			5357	1841	3211	3226	7004	7004					-0.002879161568330346
CISCLNSNAM	10	Carbamidomethyl (C)	_CISC(Carbamidomethyl (C))LNSNAM_	C(0.137)ISC(0.863)LNSNAM		C(-8)ISC(8)LNSNAM		0	1	0		ENSG00000187024|ENST00000543175|PTRH1	ENSG00000187024|ENST00000543175|PTRH1	ENSG00000187024|ENST00000543175|PTRH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.7277221679688	2	556.730294	1111.44604	0.05724	3.1867E-05	-2.7302	-0.00152	-2.673	-0.0014881	556.7286541547738	57.582	1.4161	57.582	57.227	58.643	0					90	37	4	0	0	0	0.55353	1	6487	6487		82.241	18.934	2	22584000			5358	9601	3212	3227	7005	7005	128				-0.10522974180003075
CISISSILFI	10	Unmodified	_CISISSILFI_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.309814453125	2	548.309561	1094.60457	-0.63396	-0.00034761	-2.7965	-0.0015333	-3.4304	-0.0018809	548.30787158307	101.57	1.6212	101.58	101.09	102.71	0.0090332					100	37	4	0	0	0	0.65054	1	13031	13031		71.296	2.5089	1	2768400	+		5359	25249	3213	3228	7006	7006					0.06105011062254562
CIVKRQVQWRC	11	Unmodified	_CIVKRQVQWRC_					0	0	0			REV__ENST00000473038.5_1_1:46033610-46035625:+|nuORF	REV__ENST00000473038.5_1_1:46033610-46035625:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.74530029296875	3	473.588436	1417.74348	0.16091	7.6206E-05	1.8591	0.00088046	2.02	0.00095666	473.9238464316093	49.138	0.32011	48.986	48.756	49.076	-0.15276					13	8	2	0	0	0	0.024736	1	5032	5032		31.634	0	1	99216	+		5360	33224	3214	3229	7007	7007					0.0513165047880193
CIVRNPYTGH	10	Unmodified	_CIVRNPYTGH_					0	0	0		ENST00000554990.5_1_14:50886739-50915587:-|nuORF;ENSG00000012983|ENST00000682126|MAP4K5	ENST00000554990.5_1_14:50886739-50915587:-|nuORF;ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.3038330078125	2	580.287482	1158.56041	-0.3886	-0.0002255	-3.8333	-0.0022244	-4.2219	-0.0024499	580.2852757188891	65.51	0.66093	65.268	64.964	65.625	-0.24145					24	15	2	0	0	0	0.03519	1	7442	7442		23.042	8.9054	1	414060			5361	16667;910	3215	3230	7008	7008					-0.012525803113476286
CIWLPCCHV	9	Unmodified	_CIWLPCCHV_					0	0	0			REV__ENST00000465438.1_1_7:99076349-99076529:+|nuORF	REV__ENST00000465438.1_1_7:99076349-99076529:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3106689453125	2	537.240101	1072.46565	-0.66417	-0.00035682	-2.7917	-0.0014998	-3.4558	-0.0018566	537.2378354230974	53.94	0.2462	53.793	53.675	53.921	-0.14723					9	6	2	0	0	0	0.024475	1	5823	5823		29.842	6.7991	1	64268	+		5362	33003	3216	3231	7009	7009					-0.0676855337858342
CKCDEGYES	9	Unmodified	_CKCDEGYES_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3053588867188	2	517.1837	1032.35285	-0.26284	-0.00013594	-4.1895	-0.0021667	-4.4523	-0.0023027	517.1807664062101	60.212	0.11008	59.964	59.909	60.019	-0.24842					4	2	2	0	0	0	0.024541	1	6677	6677		5.9211	2.5111	1	70350			5363	7509	3217	3232	7010	7010					-0.1620357536157826
CKDICELVI	9	Carbamidomethyl (C)	_CKDIC(Carbamidomethyl (C))ELVI_	CKDIC(1)ELVI		C(-35)KDIC(35)ELVI		0	1	0		ENSG00000212916|ENST00000418460|MAP10	ENSG00000212916|ENST00000418460|MAP10	ENSG00000212916|ENST00000418460|MAP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.7767333984375	2	546.775028	1091.5355	-0.44264	-0.00024202	3.8551	0.0021079	3.4124	0.0018658	546.7776713516633	52.622	1.9552	52.475	52.132	54.088	-0.14723					88	52	3	0	0	0	0.18915	2	5629	5629;5656		90.777	13.78	2	4571500			5364	10484	3218	3233	7011;7012	7011	149				-0.006603962289773335
CKDICELVI	9	Carbamidomethyl (C)	_CKDIC(Carbamidomethyl (C))ELVI_	CKDIC(1)ELVI		C(-47)KDIC(47)ELVI		0	1	0		ENSG00000212916|ENST00000418460|MAP10	ENSG00000212916|ENST00000418460|MAP10	ENSG00000212916|ENST00000418460|MAP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.7759399414062	2	546.775028	1091.5355	-0.77624	-0.00042443	3.8439	0.0021017	3.0676	0.0016773	546.7772751004329	52.43	1.9846	52.522	52.16	54.144	0.091938					110	53	3	0	0	0	0.13494	3	5530	5530;5542;5570		102.77	15.077	2	8984600			5365	10484	3218	3233	7013;7014;7015	7013	149				-0.006603962289773335
CKDICELVI	9	Carbamidomethyl (C)	_CKDIC(Carbamidomethyl (C))ELVI_					0	1	0		ENSG00000212916|ENST00000418460|MAP10	ENSG00000212916|ENST00000418460|MAP10	ENSG00000212916|ENST00000418460|MAP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.775028	1091.5355	-0.68102	-0.00037237	-1.1539	-0.00063092	-1.8349	-0.0010033	546.7754994630159	52.574	0.62249	52.307	52.092	52.714	-0.26656	-0.14892	-0.0046965	NaN	102.77	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139060			5366	10484	3218	3233			149				-0.006603962289773335
CKENYYKL	8	Unmodified	_CKENYYKL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7584228515625	2	530.760235	1059.50592	0.26411	0.00014018	-3.3534	-0.0017798	-3.0892	-0.0016396	530.7582937272027	96.697	1.061	96.703	96.397	97.458	0.0065079					59	23	4	0	0	0	0.76379	1	12336	12336		62.107	5.3864	1	538290			5367	1550	3219	3234	7016	7016					-0.02145592182796463
CKFFIKILIN	10	Unmodified	_CKFFIKILIN_					0	0	0		ENST00000531466.1_1_6:128326139-128326361:-|nuORF	ENST00000531466.1_1_6:128326139-128326361:-|nuORF	ENST00000531466.1_1_6:128326139-128326361:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8683471679688	2	619.87012	1237.72569	-0.53181	-0.00032965	-0.46832	-0.0002903	-1.0001	-0.00061995	619.869574942614	104.77	0.53139	104.76	104.51	105.05	-0.0015945					37	16	3	0	0	0	1.1197	1	13385	13385		20.947	1.8434	1	203150			5368	16260	3220	3235	7017	7017					0.11633258495589871
CKFLIVLIV	9	Unmodified	_CKFLIVLIV_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3076782226562	2	524.335381	1046.65621	0.22313	0.00011699	-1.0975	-0.00057543	-0.87433	-0.00045844	524.335508166644	75.624	0.27173	75.449	75.351	75.622	-0.17548					10	6	2	0	0	0	0.024541	1	8928	8928		12.207	0	1	49736	+		5369	20714	3221	3236	7018	7018					0.1347479954681603
CKGKIYVI	8	Unmodified	_CKGKIYVI_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.75885009765625	2	462.272781	922.531009	-0.038867	-1.7967E-05	-1.7226	-0.00079632	-1.7615	-0.00081429	462.2720379794561	30.563	0.20589	30.638	30.544	30.75	0.074314					7	4	2	0	0	0	0.027866	1	1912	1912		19.36	10.538	1	58627			5370	1849	3222	3237	7019	7019					0.06664507410437182
CKGKIYVI	8	Unmodified	_CKGKIYVI_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.272781	922.531009	-0.30387	-0.00014047	-7.3646	-0.0034045	-7.6685	-0.0035449	462.2692022967181	31.233	0.65826	30.991	30.711	31.369	-0.24109	0.14239	-0.0018611	NaN	19.36	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190850			5371	1849	3222	3237							0.06664507410437182
CKGKIYVI	8	Unmodified	_CKGKIYVI_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.272781	922.531009	-0.45542	-0.00021053	-7.0834	-0.0032745	-7.5388	-0.003485	462.26918767772275	31.103	0.47548	30.918	30.66	31.136	-0.18503	0.06888	-0.0016011	NaN	19.36	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170750			5372	1849	3222	3237							0.06664507410437182
CKGKSELRV	9	Unmodified	_CKGKSELRV_					0	0	0			REV__FGL2|p.R46K|1|0.07|ENSG00000127951|chr7:77199657-77199657|C/T|missense_variant	REV__FGL2|p.R46K|1|0.07|ENSG00000127951|chr7:77199657-77199657|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2850036621094	2	510.286951	1018.55935	-0.38288	-0.00019538	-2.9094	-0.0014846	-3.2923	-0.00168	510.2850619104917	56.874	0.84923	56.969	56.432	57.281	0.095306					84	22	6	0	0	0	0.26966	1	6290	6290		79.713	0.26157	1	7085500	+		5373	36041	3223	3238	7020	7020					0.05081205319720539
CKGRGKRVT	9	Unmodified	_CKGRGKRVT_					0	0	0		nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.78125	2	502.792735	1003.57092	0.028363	1.4261E-05	2.0538	0.0010326	2.0822	0.0010469	502.79344910556017	52.373	0.69959	52.465	52.24	52.939	0.091938					38	17	3	0	0	0	0.024535	1	5576	5576		7.1934	0	1	643110			5374	18266	3224	3239	7021	7021					0.06927447133716669
CKLFIELV	8	Unmodified	_CKLFIELV_					0	0	0			REV__ENST00000496647.5_1_3:69038048-69050774:-|nuORF	REV__ENST00000496647.5_1_3:69038048-69050774:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.77435302734375	2	482.780439	963.546325	0.045374	2.1906E-05	3.7472	0.0018091	3.7926	0.001831	482.78211746776736	49.866	1.0204	49.715	49.368	50.388	-0.1512					78	28	5	0	0	0	0.94517	1	5152	5152		45.952	1.4209	1	2961400	+		5375	33831	3225	3240	7022	7022					0.06309374207614837
CKPQLILVL	9	Unmodified	_CKPQLILVL_					0	0	0			REV__nc|ENSG00000162413|Q9UJP4-2|KLHL21	REV__nc|ENSG00000162413|Q9UJP4-2|KLHL21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8248901367188	2	513.822638	1025.63072	-1.1869	-0.00060988	4.4851	0.0023046	3.2982	0.0016947	513.825017437267	39.844	1.2054	39.868	39.526	40.731	0.023727					88	33	5	0	0	0	0.78069	1	3432	3432		40.573	7.057	1	11651000	+		5376	36844	3226	3241	7023	7023					0.1189332502437992
CKRIKLRCL	9	Unmodified	_CKRIKLRCL_					0	0	0			REV__ENSG00000239388|ENST00000487349|ASB14	REV__ENSG00000239388|ENST00000487349|ASB14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.829345703125	2	566.843913	1131.67327	-0.54813	-0.0003107	2.9518	0.0016732	2.4036	0.0013625	566.8456175533737	65.099	0.2409	64.844	64.7	64.941	-0.25563					10	5	2	0	0	0	0.024457	1	7416	7416		29.15	0	1	74799	+		5377	28949	3228	3242	7024	7024					0.11270396880968292
CKRNIRNI	8	Unmodified	_CKRNIRNI_					0	0	0		ENSG00000157999|ENST00000409061|ANKRD61	ENSG00000157999|ENST00000409061|ANKRD61	ENSG00000157999|ENST00000409061|ANKRD61	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.81341552734375	2	508.792735	1015.57092	-0.13017	-6.6229E-05	3.5721	0.0018175	3.4419	0.0017512	508.79441756615813	93.721	0.95059	93.721	93.177	94.128	0					52	20	3	0	0	0	0.027866	1	11868	11868		25.45	8.0852	1	344080			5378	6635	3229	3243	7025	7025					0.06375447133711987
CKSEVAGN	8	Unmodified	_CKSEVAGN_					0	0	0			REV__ENST00000606851.5_1_6:22020665-22056887:+|nuORF	REV__ENST00000606851.5_1_6:22020665-22056887:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2326354980469	2	404.186903	806.359253	1.0379	0.00041949	1.7128	0.00069229	2.7506	0.0011118	404.1868702138511	81.492	0.83616	81.299	81.05	81.886	-0.19334					34	19	3	0	0	0	0.027866	1	9845	9845		27.882	10.517	1	83271	+		5379	35937	3230	3244	7026	7026					-0.051672693478849396
CKSGTSVK	8	Unmodified	_CKSGTSVK_					0	0	0		nc|ENSG00000211747|A0A075B6N2|TRBV20-1	nc|ENSG00000211747|A0A075B6N2|TRBV20-1	nc|ENSG00000211747|A0A075B6N2|TRBV20-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5111999511719	2	405.212921	808.411288	0.46833	0.00018977	-3.9178	-0.0015875	-3.4494	-0.0013978	405.2111274803775	32.35	0.47417	32.113	31.824	32.299	-0.23666					21	10	3	0	0	0	0.027866	1	2200	2200		6.3127	0	1	157210			5380	18697	3231	3245	7027	7027					-0.0005810593412434173
CKSLFQENL	9	Unmodified	_CKSLFQENL_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7931518554688	2	541.270967	1080.52738	0.41133	0.00022264	-3.9441	-0.0021348	-3.5327	-0.0019122	541.2687315740654	84.333	0.72834	84.174	83.844	84.573	-0.15868					30	12	3	0	0	0	0.024351	1	10189	10189		51.528	22.358	1	278920	+		5381	23844	3232	3246	7028	7028					-0.00966207154078802
CKSLLEEYK	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KSLLEEYK_	C(1)KSLLEEYK		C(80)KSLLEEYK		0	1	0			REV__ENSG00000109089|ENST00000337231|CDR2L	REV__ENSG00000109089|ENST00000337231|CDR2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.2944946289062	2	585.297181	1168.57981	-0.56043	-0.00032802	-0.85677	-0.00050147	-1.4172	-0.00082949	585.2962285611397	56.367	0.58641	56.151	55.881	56.468	-0.21607					34	14	3	0	0	0	0.26966	1	6115	6115		79.713	14.247	1	2136200	+		5382	21780	3233	3247	7029	7029	279				0.0022633118885551085
CKSLLEEYK	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KSLLEEYK_	C(1)KSLLEEYK		C(70)KSLLEEYK		0	1	0			REV__ENSG00000109089|ENST00000337231|CDR2L	REV__ENSG00000109089|ENST00000337231|CDR2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2949829101562	2	585.297181	1168.57981	-0.83998	-0.00049164	-0.82951	-0.00048551	-1.6695	-0.00097715	585.2962455090317	56.426	0.70436	56.202	55.878	56.582	-0.2248					37	17	4	0	0	0	0.34489	1	6091	6091		69.628	6.0938	1	2288200	+		5383	21780	3233	3247	7030	7030	279				0.0022633118885551085
CKSQSPTCQM	10	Unmodified	_CKSQSPTCQM_					0	0	0		ENST00000546922.1_1_12:58140470-58140962:+|nuORF;ENSG00000135452|ENST00000257910|TSPAN31	ENST00000546922.1_1_12:58140470-58140962:+|nuORF	ENST00000546922.1_1_12:58140470-58140962:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.7284545898438	2	556.730294	1111.44604	0.05724	3.1867E-05	-2.7302	-0.00152	-2.673	-0.0014881	556.7286541547738	57.582	1.4161	57.582	57.227	58.643	0					90	37	4	0	0	0	0.96822	1	6499	6499		49.536	1.5765	1	22584000			5384	4897	3234	3248	7031	7031					-0.10522974179980338
CKVSGLPTPD	10	Unmodified	_CKVSGLPTPD_					0	0	0		ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.78363037109375	2	508.757692	1015.50083	-0.69691	-0.00035456	-3.8704	-0.0019691	-4.5673	-0.0023236	509.2545632504847	56.755	0.32329	56.59	56.387	56.71	-0.16432					9	8	2	0	0	0	0.03519	1	6311	6311		56.434	19.987	1	107310			5385	18259;18260;4331	3235	3249	7032	7032					-0.0062989604541598965
CKYIVVLLVL	10	Unmodified	_CKYIVVLLVL_					0	0	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.8140869140625	2	581.867046	1161.71954	0.35416	0.00020607	-1.7253	-0.0010039	-1.3712	-0.00079784	581.8660933014941	20.12	0.13895	19.92	19.85	19.988	-0.2001					4	2	2	0	0	0	0.03519	1	501	501		16.473	4.2663	1	21891	+		5386	28098	3236	3250	7033	7033					0.14514740264053216
CLACGSLLLW	10	Unmodified	_CLACGSLLLW_					0	0	0		ENST00000504636.1_1_5:87565403-87565577:+|nuORF	ENST00000504636.1_1_5:87565403-87565577:+|nuORF	ENST00000504636.1_1_5:87565403-87565577:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8182373046875	2	539.774831	1077.53511	-0.32432	-0.00017506	3.3097	0.0017865	2.9854	0.0016114	539.7764713211839	74.489	0.33997	74.306	74.094	74.434	-0.18279					10	7	2	0	0	0	0.03519	1	8774	8774		30.504	0	1	104220			5387	15718	3237	3251	7034	7034					-0.0005577115814503486
CLAKHLKHM	9	Unmodified	_CLAKHLKHM_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2;TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.8168334960938	2	540.793889	1079.57323	-0.36845	-0.00019926	-0.55435	-0.00029979	-0.92281	-0.00049905	540.7936397510565	40.677	0.46279	40.677	40.481	40.944	0					20	12	2	0	0	0	0.024517	1	3627	3627		26.796	0	1	393760			5388	3815	3238	3252	7035	7035					0.03662159547184274
CLALSLGTYL	10	Unmodified	_CLALSLGTYL_					0	0	0			REV__ENSG00000261115|ENST00000565468|TMEM178B	REV__ENSG00000261115|ENST00000565468|TMEM178B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7674560546875	2	527.286085	1052.55762	-0.64372	-0.00033943	2.994	0.0015787	2.3503	0.0012393	527.2877251490585	23.022	0.31305	22.961	22.798	23.111	-0.06086					10	6	2	0	0	0	0.03519	1	837	837		44.117	13.613	1	28090	+		5389	29109	3239	3253	7036	7036					0.0334415151110079
CLATQTKLHSI	11	Unmodified	_CLATQTKLHSI_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	607.788330078125	2	607.831723	1213.64889	-0.33329	-0.00020259	-1.0247	-0.00062282	-1.358	-0.00082541	607.8310435014411	53.539	0.11202	53.281	53.186	53.298	-0.25838					4	2	2	0	0	0	0.024749	1	5607	5607		13.454	0	1	116580			5390	3896	3240	3254	7037	7037					0.05061415208433573
CLATRQKKKHL	11	Unmodified	_CLATRQKKKHL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.6012878417969	3	442.599329	1324.77616	0.13106	5.8006E-05	3.5393	0.0015665	3.6703	0.0016245	442.6009585536604	102.32	0.56578	102.33	102.02	102.59	0.0073471					40	12	6	0	0	0	1.0648	1	13091	13091		21.032	3.8655	1	563770			5391	7326	3241	3255	7038	7038					0.12676180873268095
CLCFHLRV	8	Unmodified	_CLCFHLRV_					0	0	0		ENST00000584717.1_1_17:80059368-80059527:-|nuORF	ENST00000584717.1_1_17:80059368-80059527:-|nuORF	ENST00000584717.1_1_17:80059368-80059527:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2812194824219	2	495.754233	989.493912	2.683	0.0013301	-0.11426	-5.6645E-05	2.5687	0.0012735	495.7540925607517	18.599	1.4726	18.599	17.795	19.268	0					40	29	2	0	0	0	0.027866	1	279	279		23.037	0	1	25909			5392	17212	3242	3256	7039	7039					-0.0012548740695592642
CLCHLVYSTV	10	Unmodified	_CLCHLVYSTV_					0	0	0		ENST00000366641.3_1_1:231499868-231500177:-|nuORF	ENST00000366641.3_1_1:231499868-231500177:-|nuORF	ENST00000366641.3_1_1:231499868-231500177:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2774658203125	2	569.275195	1136.53584	0.16078	9.1528E-05	2.4094	0.0013716	2.5702	0.0014632	569.2764219747228	79.651	1.0433	79.5	79.11	80.153	-0.15051					73	24	4	0	0	0	1.0393	1	9554	9554		40.778	2.0246	1	1595800			5393	12820	3243	3257	7040	7040					-0.02696976509128035
CLCIVAVLRH	10	Unmodified	_CLCIVAVLRH_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.2730102539062	2	563.814822	1125.61509	-0.15694	-8.8483E-05	-0.80644	-0.00045468	-0.96337	-0.00054316	563.8152388016322	64.501	0.3562	64.299	64.144	64.5	-0.20253					11	8	2	0	0	0	0.03519	1	7315	7315		25.45	17.219	1	106040			5394	9358	3244	3258	7041	7041					0.057307152356997904
CLCSPTPLVCV	11	Carbamidomethyl (C)	_CLC(Carbamidomethyl (C))SPTPLVCV_	C(0.137)LC(0.856)SPTPLVC(0.007)V		C(-8)LC(8)SPTPLVC(-21)V		0	1	0			REV__ENST00000560079.6_1_15:85345654-85346083:+|nuORF	REV__ENST00000560079.6_1_15:85345654-85346083:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.2809448242188	2	596.282163	1190.54977	-0.23008	-0.00013719	-2.6565	-0.001584	-2.8865	-0.0017212	596.2804662078306	102.93	4.4498	102.93	100.72	105.17	-0.0046082					241	111	3	0	0	0	0.98218	1	13258	13258		40.778	7.9657	3	301850	+		5395	35134	3245	3259	7042	7042	457				-0.03788067072332524
CLDADQMNLY	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDADQMNLY_	C(1)LDADQMNLY		C(66)LDADQMNLY		0	1	0		ENST00000520907.1_1_19:37398825-37406144:-|nuORF;ENSG00000185869|ENST00000391711|ZNF829;nc|ENSG00000185869|Q3KNS6-3|ZNF829	ENST00000520907.1_1_19:37398825-37406144:-|nuORF	ENST00000520907.1_1_19:37398825-37406144:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.7599487304688	2	621.760106	1241.50566	0.36142	0.00022471	-0.60546	-0.00037645	-0.24404	-0.00015174	621.7597054952719	70.932	1.0096	70.66	70.427	71.437	-0.27184					60	24	4	0	0	0	0.71272	2	8259	8259;8298		66.429	9.431	1	3860900			5396	9484	3246	3260	7043;7044	7043	125				-0.1054337996497452
CLDADQMNLY	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDADQMNLY_	C(1)LDADQMNLY		C(77)LDADQMNLY		0	1	0		ENST00000520907.1_1_19:37398825-37406144:-|nuORF;ENSG00000185869|ENST00000391711|ZNF829;nc|ENSG00000185869|Q3KNS6-3|ZNF829	ENST00000520907.1_1_19:37398825-37406144:-|nuORF	ENST00000520907.1_1_19:37398825-37406144:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.7601318359375	2	621.760106	1241.50566	-1.0457	-0.0006502	1.0153	0.00063126	-0.030459	-1.8938E-05	621.7606160963422	70.883	1.0351	70.626	70.411	71.446	-0.25713					59	25	3	0	0	0	0.60198	1	8273	8273		76.774	7.9873	1	4215700			5397	9484	3246	3260	7045	7045	125				-0.1054337996497452
CLDDFDKQEPQ	11	Unmodified	_CLDDFDKQEPQ_					0	0	0			REV__MYO9A|p.Q144E|1|0.24|ENSG00000066933|chr15:72046134-72046134|G/C|missense_variant	REV__MYO9A|p.Q144E|1|0.24|ENSG00000066933|chr15:72046134-72046134|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	446.7495422363281	3	446.527454	1336.56053	-1.0787	-0.00048167	-3.7356	-0.0016681	-4.8143	-0.0021497	446.52562689274396	33.609	0.4752	33.443	33.236	33.711	-0.16565					18	11	2	0	0	0	0.024723	1	2381	2381		12.433	0.97822	1	64675	+		5398	36413	3247	3261	7046	7046					-0.09428669892690777
CLDPVLYLL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDPVLYLL_	C(1)LDPVLYLL		C(50)LDPVLYLL		0	1	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.3041381835938	2	553.301736	1104.58892	-0.71896	-0.0003978	4.0265	0.0022279	3.3076	0.0018301	553.3042203808553	92.572	0.66923	92.564	92.275	92.944	-0.0082855					27	15	2	0	0	0	0.64155	1	11725	11725		50.025	10.772	1	437860			5399	9593	3248	3262	7047	7047	127				0.04080724545178782
CLDPVLYLL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDPVLYLL_					0	1	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	553.301736	1104.58892	-0.45046	-0.00024924	3.5963	0.0019898	3.1458	0.0017406	553.3039421647946	92.6	0.71513	92.6	92.294	93.009	0	0.13493	-0.00014153	NaN	50.025	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416870			5400	9593	3248	3262			127				0.04080724545178782
CLDPVLYLL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDPVLYLL_					0	1	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.301736	1104.58892	-0.026618	-1.4728E-05	3.3762	0.001868	3.3495	0.0018533	553.3036001826572	92.601	0.62671	92.608	92.302	92.929	0.0077286	0.14322	-0.00038509	NaN	50.025	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418340			5401	9593	3248	3262			127				0.04080724545178782
CLDPVLYLL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDPVLYLL_					0	1	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.301736	1104.58892	-1.7722	-0.00098054	5.7155	0.0031624	3.9434	0.0021819	553.3057562325569	92.409	0.40128	92.265	92.127	92.528	-0.14356	-0.20004	0.0022037	NaN	50.025	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80948			5402	9593	3248	3262			127				0.04080724545178782
CLDPVLYLL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDPVLYLL_					0	1	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.301736	1104.58892	-0.15971	-8.837E-05	2.3552	0.0013031	2.1954	0.0012147	553.3040417763647	92.494	0.32288	92.371	92.182	92.505	-0.12242	-0.093962	-0.0015149	NaN	50.025	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92644			5403	9593	3248	3262			127				0.04080724545178782
CLDPVLYLL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDPVLYLL_					0	1	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.301736	1104.58892	-0.014856	-8.2198E-06	4.9051	0.002714	4.8903	0.0027058	553.3052227221053	92.524	0.53021	92.382	92.131	92.662	-0.14131	-0.082788	0.0013068	NaN	50.025	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61931			5404	9593	3248	3262			127				0.04080724545178782
CLERLGPPAPD	11	Unmodified	_CLERLGPPAPD_					0	0	0			REV__ENSG00000180900|ENST00000356994|SCRIB	REV__ENSG00000180900|ENST00000356994|SCRIB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.7775268554688	2	584.294973	1166.57539	-0.27119	-0.00015845	-0.95367	-0.00055722	-1.2249	-0.00071568	584.2945423174793	63.365	0.31586	63.107	62.96	63.276	-0.25824					11	7	2	0	0	0	0.024727	1	7133	7133		24.519	8.046	1	177300	+		5405	27370	3249	3263	7048	7048					-0.0012313323402395326
CLEVPLRSGSP	11	Unmodified	_CLEVPLRSGSP_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3;ENST00000565665.5_1_16:1383676-1389335:+|nuORF	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.3055419921875	2	579.302798	1156.59104	0.33231	0.00019251	3.2187	0.0018646	3.551	0.0020571	579.305299415618	76.977	0.5423	76.709	76.424	76.966	-0.26807					25	12	3	0	0	0	0.024774	1	9107	9107		46.457	13.644	1	176950			5406	822	3250	3264	7049	7049					0.01901153283029089
CLFAYVLMV	9	Unmodified	_CLFAYVLMV_					0	0	0		ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;nc|ENSG00000142185|O94759-3|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2823486328125	2	529.774299	1057.53405	0.34243	0.00018141	-0.64181	-0.00034001	-0.29938	-0.0001586	529.773994969785	83.93	0.43611	83.793	83.672	84.108	-0.13789					20	9	3	0	0	0	0.024389	1	10114	10114		39.021	5.5285	1	130110			5407	5542	3251	3265	7050	7050					0.007580144729445237
CLFAYVLMV	9	Unmodified	_CLFAYVLMV_					0	0	0		ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;nc|ENSG00000142185|O94759-3|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.774299	1057.53405	0.41776	0.00022132	-1.1356	-0.00060159	-0.7178	-0.00038027	529.7739377001159	84.003	0.30273	83.791	83.683	83.986	-0.21159	-0.081755	-0.00085971	NaN	49.211	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106950			5408	5542	3251	3265							0.007580144729445237
CLFCYMPEH	9	Unmodified	_CLFCYMPEH_					0	0	0			REV__ENSG00000226288|ENST00000641896|OR52I2	REV__ENSG00000226288|ENST00000641896|OR52I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.7288208007812	2	571.727023	1141.43949	-1.7971	-0.0010275	3.4562	0.001976	1.659	0.00094852	571.7289084920742	51.951	1.1507	51.682	51.321	52.471	-0.26903					88	30	4	0	0	0	0.78069	1	5329	5329		40.573	6.4001	1	4356600	+		5409	28871	3252	3266	7051	7051					-0.12556867340708777
CLFIRPISI	9	Unmodified	_CLFIRPISI_					0	0	0			REV__ENST00000360315.7_1_19:19617931-19618153:+|nuORF	REV__ENST00000360315.7_1_19:19617931-19618153:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2899780273438	2	531.312438	1060.61032	-0.012584	-6.6859E-06	-1.3307	-0.00070704	-1.3433	-0.00071372	531.811304091232	54.187	0.27382	53.989	53.857	54.131	-0.19739					11	7	2	0	0	0	0.024517	1	5733	5733		19.36	4.4951	1	105230	+		5410	30905	3253	3267	7052	7052					0.08244154364570022
CLFLKWCI	8	Unmodified	_CLFLKWCI_					0	0	0			REV__nc|ENSG00000131374|Q92609|TBC1D5	REV__nc|ENSG00000131374|Q92609|TBC1D5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7664794921875	2	513.269184	1024.52382	-0.51486	-0.00026426	-1.7668	-0.00090686	-2.2817	-0.0011711	513.268819809957	79.468	1.6715	79.468	79.035	80.707	0					86	39	4	0	0	0	0.9224	1	9825	9825		49.211	1.2952	1	6158900	+		5411	23202	3254	3268	7053	7053					0.01253451538354966
CLFSGFKER	9	Unmodified	_CLFSGFKER_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8353881835938	2	543.773677	1085.5328	0.44173	0.0002402	3.3301	0.0018108	3.7719	0.002051	543.7753616537407	19.282	0.44589	19.082	18.859	19.305	-0.2001					13	8	2	0	0	0	0.024523	1	395	395		29.15	3.6994	1	37382	+		5412	26568	3255	3269	7054	7054					-0.006544835715885711
CLFSKLFNI	9	Unmodified	_CLFSKLFNI_					0	0	0			REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|47	REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|47	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7977905273438	2	542.79662	1083.57869	0.017495	9.496E-06	1.9121	0.0010379	1.9296	0.0010474	542.7975197223367	105.7	0.89027	105.7	105.36	106.25	0					65	31	3	0	0	0	0.70186	1	13567	13567		45.952	8.1404	1	191290	+		5413	19450	3256	3270	7055	7055					0.04024161610641386
CLFYWGLN	8	Unmodified	_CLFYWGLN_					0	0	0		ENST00000396020.7_1_14:50043976-50044102:-|nuORF	ENST00000396020.7_1_14:50043976-50044102:-|nuORF	ENST00000396020.7_1_14:50043976-50044102:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.31231689453125	2	508.238938	1014.46332	-0.32055	-0.00016292	2.4522	0.0012463	2.1316	0.0010834	508.2399610954133	63.291	0.28399	63.291	63.126	63.41	0					12	7	2	0	0	0	0.027866	1	7394	7394		29.842	0	1	84851			5414	13539	3257	3271	7056	7056					-0.04332942520375127
CLGGELWTI	9	Unmodified	_CLGGELWTI_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2532653808594	2	496.249503	990.484453	0.22564	0.00011197	3.2514	0.0016135	3.4771	0.0017255	496.2510183249915	76.962	0.95641	76.975	76.49	77.447	0.013504					34	22	2	0	0	0	0.92825	1	9426	9426		30.504	1.3541	1	587220			5415	9450	3258	3272	7057	7057					-0.011169772115067644
CLGIQQVPLV	10	Unmodified	_CLGIQQVPLV_					0	0	0		ENST00000470832.1_1_X:70463642-70464308:-|nuORF	ENST00000470832.1_1_X:70463642-70464308:-|nuORF	ENST00000470832.1_1_X:70463642-70464308:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.3434448242188	2	535.307352	1068.60015	-0.24874	-0.00013315	-0.97944	-0.0005243	-1.2282	-0.00065745	535.3056176154049	76.029	0.62131	76.041	75.825	76.446	0.011642					34	15	3	0	0	0	0.03519	1	9332	9332		27.882	6.9353	1	402130			5416	14941	3259	3273	7058	7058					0.06859546639338987
CLGLHTEEA	9	Unmodified	_CLGLHTEEA_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A;nc|ENSG00000082684|Q9P283-2|SEMA5B;ENSG00000082684|ENST00000357599|SEMA5B;nc|ENSG00000082684|Q9P283-4|SEMA5B	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7243347167969	2	486.726392	971.438231	0.10589	5.1541E-05	-3.7239	-0.0018125	-3.618	-0.001761	486.72443646718756	100.27	0.70177	100.27	99.787	100.49	0					28	17	3	0	0	0	0.67308	1	12838	12838		47.916	1.9636	1	243700			5417	3249	3260	3274	7059	7059					-0.048630421136067525
CLGLLHVPL	9	Unmodified	_CLGLLHVPL_					0	0	0		nc|ENSG00000101846|P08842|STS;ENSG00000101846|ENST00000674429|STS	nc|ENSG00000101846|P08842|STS	nc|ENSG00000101846|P08842|STS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7841491699219	2	482.786056	963.557558	0.13616	6.5735E-05	-3.5541	-0.0017159	-3.418	-0.0016502	482.78416341419427	72.649	1.07	72.649	72.292	73.362	0					76	26	4	0	0	0	0.80342	1	8866	8866		39.021	8.5179	1	1791300			5418	2352	3261	3275	7060	7060					0.07432196301772365
CLGLVCLSVL	10	Unmodified	_CLGLVCLSVL_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.2855224609375	2	510.285031	1018.55551	-0.49756	-0.0002539	0.50917	0.00025982	0.011609	5.9238E-06	510.28515537696944	57.042	0.73384	57.042	56.571	57.305	0					79	20	6	0	0	0	0.62679	1	6417	6417		73.975	2.5968	1	5857600			5419	7998	3262	3276	7061	7061					0.04697399501651489
CLHLFFLVS	9	Unmodified	_CLHLFFLVS_					0	0	0			REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|111	REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|111	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8182983398438	2	539.791338	1077.56812	-0.48694	-0.00026284	3.0075	0.0016234	2.5206	0.0013606	539.7924769932473	75.143	0.54357	74.88	74.61	75.153	-0.26326					19	12	2	0	0	0	0.024443	1	8855	8855		26.796	0	1	158790	+		5420	19372	3263	3277	7062	7062					0.032441789561971746
CLIFVIYPV	9	Unmodified	_CLIFVIYPV_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|222|1|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|222|1|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|222|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.796630859375	2	533.803914	1065.59328	-1.467	-0.00078311	1.2725	0.00067925	-0.19458	-0.00010387	533.8045202648417	91.572	0.38935	91.572	91.383	91.772	0					16	8	3	0	0	0	0.023092	1	11598	11598		72.62	0	1	82717			5421	17877	3264	3278	7063	7063					0.06310233758767936
CLIKKTRRSI	10	Unmodified	_CLIKKTRRSI_					0	0	0			REV__ENST00000382044.8_1_15:43784217-43784558:-|nuORF	REV__ENST00000382044.8_1_15:43784217-43784558:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.158447265625	3	406.588542	1216.7438	0.18091	7.3556E-05	-2.7293	-0.0011097	-2.5484	-0.0010362	406.58731290559336	35.194	0.55096	34.982	34.642	35.193	-0.21246					18	13	2	0	0	0	0.03519	1	2605	2605		19.263	6.3052	1	92254	+		5422	31534	3265	3279	7064	7064					0.14409393470305076
CLIKKTRRSI	10	Unmodified	_CLIKKTRRSI_					0	0	0			REV__ENST00000382044.8_1_15:43784217-43784558:-|nuORF	REV__ENST00000382044.8_1_15:43784217-43784558:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	406.588542	1216.7438	0.27808	0.00011306	-3.1559	-0.0012832	-2.8778	-0.0011701	406.5871853320812	35.195	0.38271	34.979	34.793	35.176	-0.21555	-0.0014608	-0.00025467	NaN	14.086	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87539	+		5423	31534	3265	3279							0.14409393470305076
CLILLDVNP	9	Unmodified	_CLILLDVNP_					0	0	0		nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2	nc|ENSG00000198959|P21980-3|TGM2	nc|ENSG00000198959|P21980-3|TGM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7677917480469	2	500.280803	998.547053	-1.1491	-0.00057487	-0.18735	-9.3725E-05	-1.3364	-0.00066859	500.2807362826625	38.858	0.71362	38.694	38.184	38.898	-0.16459					37	19	2	0	0	0	0.024381	1	3276	3276		21.96	5.4867	1	226950			5424	10264	3266	3280	7065	7065					0.04772168856675307
CLISCCVLSP	10	Unmodified	_CLISCCVLSP_					0	0	0		nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;ENSG00000142330|ENST00000391984|CAPN10;ENST00000494738.5_1_2:241531329-241535404:+|nuORF	nc|ENSG00000142330|Q9HC96-5|CAPN10	nc|ENSG00000142330|Q9HC96-5|CAPN10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2996215820312	2	519.245049	1036.47554	-0.47012	-0.00024411	-3.4026	-0.0017668	-3.8727	-0.0020109	519.2430527144242	60.854	0.63198	60.648	60.336	60.968	-0.20599					31	15	3	0	0	0	0.03519	1	6741	6741		20.947	0	1	375050			5425	5554	3267	3281	7066	7066					-0.04123410163833796
CLKELSVDL	9	Unmodified	_CLKELSVDL_					0	0	0		ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2766418457031	2	510.275718	1018.53688	0.071911	3.6695E-05	-3.8783	-0.001979	-3.8064	-0.0019423	510.2737196623369	90.544	2.1866	90.557	90.161	92.347	0.013443					125	52	4	0	0	0	0.077175	1	11431	11431		118.74	6.3322	1	33874000			5426	10839	3268	3282	7067	7067					0.028355611314509588
CLKEYLYE	8	Unmodified	_CLKEYLYE_					0	0	0			REV__ENSG00000075826|ENST00000370345|SEC31B	REV__ENSG00000075826|ENST00000370345|SEC31B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3068237304688	2	530.754618	1059.49468	-0.53181	-0.00028226	-2.5433	-0.0013498	-3.0751	-0.0016321	531.253318524369	47.94	0.2617	47.842	47.63	47.892	-0.097553					8	6	2	0	0	0	0.027866	1	4729	4729		30.504	12.242	1	155000	+		5427	20557	3269	3283	7068	7068					-0.03268414276931253
CLKIRKLPS	9	Unmodified	_CLKIRKLPS_					0	0	0			REV__ENST00000482741.1_1_17:18700940-18702212:+|nuORF	REV__ENST00000482741.1_1_17:18700940-18702212:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2800903320312	2	529.331162	1056.64777	-1.0903	-0.00057711	-1.7457	-0.00092407	-2.836	-0.0015012	529.329967195894	55.806	0.47171	55.649	55.348	55.82	-0.15655					27	12	3	0	0	0	0.024447	1	6036	6036		25.574	0	1	273080	+		5428	33490	3270	3284	7069	7069					0.12171245630202066
CLKISLKAI	9	Unmodified	_CLKISLKAI_					0	0	0		ENST00000406170.1_1_6:111751648-111751957:+|nuORF	ENST00000406170.1_1_6:111751648-111751957:+|nuORF	ENST00000406170.1_1_6:111751648-111751957:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7699890136719	2	494.814813	987.615073	-0.10751	-5.3198E-05	-3.086	-0.001527	-3.1935	-0.0015802	494.81318938146694	70.394	0.61019	70.407	70.246	70.856	0.012421					26	14	2	0	0	0	0.024397	1	8441	8441		47.657	3.2801	1	914270			5429	13727	3271	3285	7070	7070					0.12077038507345605
CLKLARSIFV	10	Unmodified	_CLKLARSIFV_					0	0	0			REV__ENSG00000141639|ENST00000400384|MAPK4	REV__ENSG00000141639|ENST00000400384|MAPK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.3456420898438	2	575.344269	1148.67399	0.8633	0.00049669	1.2952	0.00074518	2.1585	0.0012419	575.3449012149558	97.098	1.2775	96.961	96.613	97.89	-0.13671					99	28	5	0	0	0	1.0236	1	12049	12049		42.864	6.4175	1	3730600	+		5430	24113	3272	3286	7071	7071					0.10559514801661862
CLLAGQPEA	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LLAGQPEA_	C(1)LLAGQPEA		C(82)LLAGQPEA		0	1	0		ENST00000546616.1_1_14:105609034-105613077:-|nuORF;nc|ENSG00000184916|Q9Y219-2|JAG2;ENSG00000184916|ENST00000331782|JAG2	ENST00000546616.1_1_14:105609034-105613077:-|nuORF	ENST00000546616.1_1_14:105609034-105613077:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7350769042969	2	479.73676	957.458967	-0.026737	-1.2827E-05	-3.1348	-0.0015039	-3.1616	-0.0015167	479.7350141799181	60.004	2.0545	59.827	59.401	61.455	-0.1761					147	51	6	0	0	0	0.25032	1	6676	6676		82.305	6.1353	1	26409000			5431	9382	3273	3287	7072	7072	121				-0.021464517339381928
CLLEQLKP	8	Unmodified	_CLLEQLKP_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.78704833984375	2	472.267696	942.520839	-0.26697	-0.00012608	1.0827	0.00051133	0.81574	0.00038525	472.26805382418087	83.736	0.69125	83.762	83.384	84.075	0.026558					25	15	2	0	0	0	0.027866	1	10385	10385		35.618	0	1	201790			5432	1255	3274	3288	7073	7073					0.04727899685212833
CLLHKQNLNA	10	Unmodified	_CLLHKQNLNA_					0	0	0		sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.3038940429688	2	577.310958	1152.60736	-1.6568	-0.00095647	-3.4217	-0.0019754	-5.0785	-0.0029318	577.3086508559846	52.402	0.33459	52.132	51.981	52.316	-0.26903					13	8	2	0	0	0	0.03519	1	5410	5410		27.882	0	1	236760			5433	37933	3275	3289	7074	7074					0.037162792397793964
CLLISRVR	8	Unmodified	_CLLISRVR_					0	0	0		ENST00000433463.1_1_4:57845093-57845168:+|nuORF	ENST00000433463.1_1_4:57845093-57845168:+|nuORF	ENST00000433463.1_1_4:57845093-57845168:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7353210449219	2	480.294579	958.574605	-0.37854	-0.00018181	-1.2628	-0.00060652	-1.6414	-0.00078833	480.29366562369546	60.748	0.64367	60.494	59.94	60.584	-0.25373					18	15	2	0	0	0	0.027866	1	6702	6702		47.916	0	1	91970			5434	14225	3276	3290	7075	7075					0.0936611690758582
CLLKLATLL	9	Unmodified	_CLLKLATLL_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28948974609375	2	494.317189	986.619824	0.37295	0.00018436	-3.3068	-0.0016346	-2.9339	-0.0014503	494.315343175915	61.661	0.72132	61.435	61.153	61.874	-0.22663					32	18	3	0	0	0	0.019502	1	7132	7132		87.754	0	1	481970	+		5435	27807	3277	3291	7076	7076					0.12597922650115834
CLLNHRNLV	9	Unmodified	_CLLNHRNLV_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7542724609375	2	541.300393	1080.58623	-0.97304	-0.0005267	1.588	0.00085961	0.61501	0.0003329	541.8039886058637	38.178	0.095474	37.999	37.939	38.035	-0.17929					4	2	2	0	0	0	0.024535	1	3121	3121		25.45	11.313	1	55192	+		5436	26806	3278	3292	7077	7077					0.04916313930903016
CLLNYRVDF	9	Unmodified	_CLLNYRVDF_					0	0	0		nc|ENSG00000168268|Q9H857-4|NT5DC2;nc|ENSG00000168268|Q9H857|NT5DC2;nc|ENSG00000168268|Q9H857-3|NT5DC2;ENSG00000168268|ENST00000422318|NT5DC2	nc|ENSG00000168268|Q9H857-4|NT5DC2	nc|ENSG00000168268|Q9H857-4|NT5DC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.78857421875	2	571.786784	1141.55902	1.6487	0.00094268	2.8166	0.0016105	4.4652	0.0025532	571.788342028554	16.885	0.34018	16.731	16.567	16.907	-0.15376					14	6	3	0	0	0	0.99229	1	114	114		21.96	1.013	1	119460			5437	7804	3279	3293	7078	7078					-0.006102144001260967
CLLPELLEL	9	Unmodified	_CLLPELLEL_					0	0	0			REV__ENST00000265631.9_1_7:95813708-95814244:-|nuORF	REV__ENST00000265631.9_1_7:95813708-95814244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2797241210938	2	521.796286	1041.57802	-1.9115	-0.00099739	3.7102	0.001936	1.7987	0.00093858	521.7987938487574	60.317	0.85263	60.396	59.648	60.501	0.078884					27	22	2	0	0	0	0.024323	1	6780	6780		53.351	3.8154	1	238040	+		5438	29741	3280	3294	7079	7079					0.058893221709240606
CLLPELLEL	9	Unmodified	_CLLPELLEL_					0	0	0			REV__ENST00000265631.9_1_7:95813708-95814244:-|nuORF	REV__ENST00000265631.9_1_7:95813708-95814244:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.796286	1041.57802	-0.90044	-0.00046985	3.3812	0.0017643	2.4808	0.0012945	521.7983720710076	60.373	0.36567	60.373	60.143	60.509	0	0.015498	0.00024618	NaN	53.351	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230690	+		5439	29741	3280	3294							0.058893221709240606
CLLPHPAEV	9	Unmodified	_CLLPHPAEV_					0	0	0		ENST00000536690.1_1_11:64064895-64067293:+|nuORF	ENST00000536690.1_1_11:64064895-64067293:+|nuORF	ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.29254150390625	2	489.757495	977.500437	-0.70463	-0.0003451	2.5286	0.0012384	1.8239	0.00089328	489.75897919689623	60.875	0.3768	60.662	60.457	60.834	-0.21339					11	9	2	0	0	0	0.024412	1	6991	6991		31.955	0	1	194680			5440	16365	3281	3295	7080	7080					0.010787290254029358
CLLPVQVVT	9	Unmodified	_CLLPVQVVT_					0	0	0		nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5;ENSG00000240764|ENST00000252087|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.81231689453125	2	486.283346	970.552139	0.39908	0.00019407	1.9913	0.00096833	2.3904	0.0011624	486.2848802745267	89.021	1.5606	88.884	88.232	89.793	-0.13761					90	36	5	0	0	0	0.024323	1	10893	10893		53.351	9.2347	1	219000			5441	10773	3282	3296	7081	7081					0.06568472719300189
CLLQLAAL	8	Unmodified	_CLLQLAAL_					0	0	0			REV__ENST00000468712.5_1_7:26897124-26897262:-|nuORF	REV__ENST00000468712.5_1_7:26897124-26897262:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.55487060546875	2	422.751682	843.48881	2.3197	0.00098068	0.31919	0.00013494	2.6389	0.0011156	422.7521681669426	24.24	0.61278	24.059	23.848	24.461	-0.18089					24	13	2	0	0	0	0.027866	1	993	993		28.254	2.8041	1	102100	+		5442	33111	3283	3297	7082	7082					0.06080532002044947
CLLRPWFY	8	Unmodified	_CLLRPWFY_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2796630859375	2	549.28368	1096.55281	0.13041	7.1631E-05	4.0425	0.0022205	4.1729	0.0022921	549.2857556349824	53.109	0.5043	52.982	52.713	53.217	-0.12705					21	12	2	0	0	0	0.027866	1	5514	5514		15.636	0	1	306000			5443	7236	3284	3298	7083	7083					0.008393121589961083
CLLTANEGELY	11	Unmodified	_CLLTANEGELY_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2903442382812	2	613.292096	1224.56964	-1.3678	-0.00083883	-1.8261	-0.0011199	-3.1938	-0.0019588	613.2910663344024	60.993	2.0779	60.787	60.213	62.291	-0.20599					148	51	4	0	0	0	0.31805	1	6821	6821		88.177	5.9364	1	52007000	+		5444	25910	3285	3299	7084	7084					-0.03366276536348778
CLLTANEGELY	11	Unmodified	_CLLTANEGELY_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.2904052734375	2	613.292096	1224.56964	-1.2832	-0.00078698	-2.041	-0.0012517	-3.3242	-0.0020387	613.2908696486643	60.831	2.3089	60.654	60.076	62.385	-0.1761					192	57	5	0	0	0	0.31805	2	6772	6772;6796		88.177	0.9462	1	55768000	+		5445	25910	3285	3299	7085;7086	7085					-0.03366276536348778
CLLTANEGELY	11	Unmodified	_CLLTANEGELY_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2899780273438	2	613.292096	1224.56964	-1.0024	-0.00061478	-2.4462	-0.0015002	-3.4486	-0.002115	613.2906327929812	61.043	2.0404	60.789	60.253	62.293	-0.25373					176	50	5	0	0	0	0.25893	2	6780	6770;6780		93.143	7.9824	1	55372000	+		5446	25910	3285	3299	7087;7088	7088					-0.03366276536348778
CLLTPSEMAP	10	Unmodified	_CLLTPSEMAP_					0	0	0			REV__ENSG00000179639|ENST00000693622|FCER1A	REV__ENSG00000179639|ENST00000693622|FCER1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.291748046875	2	531.253928	1060.4933	-0.14944	-7.9392E-05	3.2014	0.0017007	3.0519	0.0016214	531.2567232506317	61.944	0.23592	61.687	61.547	61.783	-0.25725					8	5	2	0	0	0	0.03519	1	6924	6924		29.15	3.6994	1	113010	+		5447	27287	3286	3300	7089	7089					-0.0345237163735419
CLLVFPLVP	9	Unmodified	_CLLVFPLVP_					0	0	0		nc|ENSG00000124574|Q5T3U5-2|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7731628417969	2	500.798632	999.582711	-0.84097	-0.00042116	3.7724	0.0018892	2.9314	0.0014681	500.80036916592087	44.52	0.87231	44.415	44.064	44.937	-0.10468					58	22	4	0	0	0	0.023868	1	4106	4106		49.211	27.251	1	2488600			5448	18242	3287	3301	7090	7090					0.08290251104335766
CLLVWFNMP	9	Unmodified	_CLLVWFNMP_					0	0	0			REV__ENST00000529045.1_1_1:114406964-114414292:-|nuORF	REV__ENST00000529045.1_1_1:114406964-114414292:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.8031005859375	2	561.777373	1121.54019	-1.1371	-0.0006388	3.1277	0.0017571	1.9906	0.0011183	561.7790700159171	62.052	0.35873	62.052	61.758	62.117	0					18	9	2	0	0	0	0.024325	1	7209	7209		50.025	18.495	1	1337300	+		5449	34508	3288	3302	7091	7091					-0.015714672955482456
CLLWGPLEF	9	Unmodified	_CLLWGPLEF_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.8268432617188	2	539.275521	1076.53649	-0.67489	-0.00036395	4.422	0.0023847	3.7471	0.0020207	539.2776148597071	54.71	0.59171	54.564	54.208	54.8	-0.14609					24	15	2	0	0	0	0.024497	1	5862	5862		13.775	0	1	975260	+		5450	19472	3289	3303	7092	7092					0.0012818620225516497
CLMLLMGTV	9	Unmodified	_CLMLLMGTV_					0	0	0		PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant;ENSG00000116793|ENST00000369604|PHTF1;nc|ENSG00000116793|Q9UMS5-2|PHTF1;ENST00000472612.5_1_1:114268399-114280846:-|nuORF	PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.2635803222656	2	490.75251	979.490466	-0.22144	-0.00010867	-2.51	-0.0012318	-2.7315	-0.0013405	490.751128631622	28.251	0.35828	28.099	27.885	28.243	-0.15195					11	8	2	0	0	0	0.024354	1	1590	1590		38.806	13.356	1	119300			5451	3579	3290	3304	7093	7093					-9.918295836541802E-05
CLNMSDSYCPM	11	Unmodified	_CLNMSDSYCPM_					0	0	0			REV__ENST00000261716.7_1_17:27849334-27849421:+|nuORF	REV__ENST00000261716.7_1_17:27849334-27849421:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	631.3268432617188	2	632.22927	1262.44399	-0.85987	-0.00054364	-2.2483	-0.0014214	-3.1082	-0.0019651	632.2280044988154	56.603	0.67508	56.436	56.001	56.676	-0.1672					18	16	2	0	0	0	0.024788	1	6116	6116		19.997	0	1	105080	+		5452	29632	3291	3305	7094	7094					-0.17673770980104564
CLNTTSPRI	9	Unmodified	_CLNTTSPRI_					0	0	0		ENST00000372155.2_1_9:135470047-135470161:-|nuORF	ENST00000372155.2_1_9:135470047-135470161:-|nuORF	ENST00000372155.2_1_9:135470047-135470161:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.76220703125	2	502.763309	1003.51206	-0.025563	-1.2852E-05	-3.5561	-0.0017879	-3.5817	-0.0018007	502.76145104293823	63.639	0.86402	63.387	63.048	63.912	-0.25141					76	23	4	0	0	0	0.39228	1	7429	7429		66.429	2.222	1	7724700			5453	13029	3292	3306	7095	7095					0.010449260487234824
CLPCPPRY	8	Unmodified	_CLPCPPRY_					0	0	0		ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.2607727050781	2	474.725141	947.435729	-0.12796	-6.0748E-05	1.0397	0.00049358	0.91176	0.00043283	474.72530739953555	40.567	0.81281	40.342	40.078	40.89	-0.225					43	21	3	0	0	0	0.027866	1	3528	3528		42.474	14.592	1	1957200			5454	9541	3293	3307	7096	7096					-0.040091690522558565
CLPKRRRSL	9	Unmodified	_CLPKRRRSL_					0	0	0		ENST00000358465.6_1_1:114948043-114948136:-|nuORF	ENST00000358465.6_1_1:114948043-114948136:-|nuORF	ENST00000358465.6_1_1:114948043-114948136:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7225952148438	2	564.842759	1127.67097	0.044051	2.4882E-05	-0.65459	-0.00036974	-0.61054	-0.00034486	564.8423450128194	49.579	0.29969	49.474	49.335	49.635	-0.10558					13	7	2	0	0	0	0.024523	1	4972	4972		21.96	9.1482	1	135380			5455	12717	3294	3308	7097	7097					0.11223684467540807
CLPLPFGEP	9	Unmodified	_CLPLPFGEP_					0	0	0		nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5	nc|ENSG00000139292|O75473-3|LGR5	nc|ENSG00000139292|O75473-3|LGR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7478942871094	2	486.746596	971.478639	-1.0539	-0.00051297	2.2842	0.0011118	1.2303	0.00059885	486.74797832478146	106.39	0.29813	106.26	106.14	106.44	-0.13279					18	13	2	0	0	0	0.88411	1	13235	13235		33.516	3.0119	1	183300			5456	5321	3295	3309	7098	7098					-0.008240757231646967
CLPSLSGPSV	10	Unmodified	_CLPSLSGPSV_					0	0	0			REV__ENST00000411425.1_1_2:95824760-95825081:-|nuORF	REV__ENST00000411425.1_1_2:95824760-95825081:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29193115234375	2	480.24696	958.479368	-0.56182	-0.00026981	-2.8087	-0.0013489	-3.3705	-0.0016187	480.2458765360955	56.163	0.29803	55.948	55.78	56.078	-0.21551					9	7	2	0	0	0	0.03519	1	6075	6075		26.693	0	1	62891	+		5457	31981	3296	3310	7099	7099					-0.0015328107410823577
CLPVQAKKH	9	Unmodified	_CLPVQAKKH_					0	0	0		ENST00000508722.5_1_5:34839321-34867279:+|nuORF	ENST00000508722.5_1_5:34839321-34867279:+|nuORF	ENST00000508722.5_1_5:34839321-34867279:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2931518554688	2	512.292037	1022.56952	0.71301	0.00036527	3.1683	0.0016231	3.8813	0.0019883	512.2934707485983	20.469	0.98444	20.538	20.267	21.251	0.068901					33	19	3	0	0	0	0.70186	1	518	518		45.952	8.7928	1	267880			5458	15787	3297	3311	7100	7100					0.059138130449582604
CLQGLWGRASR	11	Unmodified	_CLQGLWGRASR_					0	0	0		ENSG00000179921|ENST00000519574|GPBAR1	ENSG00000179921|ENST00000519574|GPBAR1	ENSG00000179921|ENST00000519574|GPBAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.22076416015625	3	416.22063	1245.64006	2.0985	0.00087345	-1.5063	-0.00062695	0.59222	0.0002465	416.21973212096015	24.551	2.2653	24.37	23.582	25.848	-0.18089					142	52	4	0	0	0	0.99689	1	1099	1099		37.508	4.4688	1	1613200			5459	8939	3298	3312	7101	7101					0.02706486362603755
CLQPRIAPL	9	Unmodified	_CLQPRIAPL_					0	0	0			REV__nc|ENSG00000182196|Q66PJ3-4|ARL6IP4	REV__nc|ENSG00000182196|Q66PJ3-4|ARL6IP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.32379150390625	2	505.794412	1009.57427	-0.46421	-0.00023479	1.4329	0.00072476	0.96871	0.00048997	506.2967967737409	79.288	0.66745	79.288	79.119	79.786	0					19	15	2	0	0	0	0.024294	1	9842	9842		55.504	14.932	1	115760	+		5460	36991	3299	3313	7102	7102					0.06986697187710433
CLQQAWELY	9	Unmodified	_CLQQAWELY_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.26904296875	2	577.270967	1152.52738	-0.099437	-5.7402E-05	-3.0404	-0.0017552	-3.1399	-0.0018126	577.269155175741	63.645	1.5191	63.417	63.095	64.614	-0.22773					98	38	4	0	0	0	0.35646	1	7228	7228		68.787	10.557	1	8629400			5461	9560	3300	3314	7103	7103					-0.0427820715406142
CLRALSLHI	9	Unmodified	_CLRALSLHI_					0	0	0		KCNH4|p.Q789Rfs*39|1|0.18|ENSG00000089558|chr17:42163718-42163718|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4	KCNH4|p.Q789Rfs*39|1|0.18|ENSG00000089558|chr17:42163718-42163718|G/-|frameshift_variant	KCNH4|p.Q789Rfs*39|1|0.18|ENSG00000089558|chr17:42163718-42163718|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2991333007812	2	513.299862	1024.58517	-0.47622	-0.00024444	0.18887	9.6944E-05	-0.28735	-0.0001475	513.2997899750378	23.088	0.50552	22.903	22.646	23.152	-0.18514					27	10	4	0	0	0	0.4752	1	882	882		60.972	8.0352	1	515900			5462	1910	3301	3315	7104	7104					0.07386099562017989
CLRHFSQTS	9	Unmodified	_CLRHFSQTS_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7573852539062	2	539.758558	1077.50256	1.217	0.00065691	-1.1041	-0.00059597	0.1129	6.0938E-05	539.7578475347033	16.699	0.29655	16.545	16.409	16.706	-0.15376					14	6	3	0	0	0	0.75397	1	89	89		42.396	3.59	1	173150			5463	6083	3302	3316	7105	7105					-0.03308842236788223
CLRKAKKFV	9	Unmodified	_CLRKAKKFV_					0	0	0		ENSG00000007908|ENST00000333360|SELE	ENSG00000007908|ENST00000333360|SELE	ENSG00000007908|ENST00000333360|SELE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.34033203125	2	546.839154	1091.66375	0.67567	0.00036948	1.0747	0.0005877	1.7504	0.00095718	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	1.0101	1	12432	12432		18.324	0.95945	1	9262700			5464	826	3303	3317	7106	7106					0.12158951867104406
CLRSWLAPK	9	Unmodified	_CLRSWLAPK_					0	0	0			REV__ENST00000317122.2_1_1:16161889-16162045:-|nuORF	REV__ENST00000317122.2_1_1:16161889-16162045:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.78076171875	2	537.299862	1072.58517	-1.0823	-0.00058152	0.081863	4.3985E-05	-1.0004	-0.00053753	537.8009103993376	35.376	0.23033	35.42	35.305	35.535	0.044056					7	5	2	0	0	0	0.024427	1	2675	2675		34.173	5.0025	1	94402	+		5465	30290	3304	3318	7107	7107					0.05178099561999261
CLRTWGWK	8	Unmodified	_CLRTWGWK_					0	0	0			REV__ENST00000486331.1_1_22:41730826-41731108:+|nuORF	REV__ENST00000486331.1_1_22:41730826-41731108:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.27099609375	2	525.271104	1048.52766	-1.9793	-0.0010397	3.5071	0.0018422	1.5279	0.00080255	525.272848421874	29.919	0.88829	29.919	29.37	30.258	0					50	21	4	0	0	0	0.845	1	1880	1880		55.504	7.8469	1	738010	+		5466	33584	3305	3319	7108	7108					0.005332573564373888
CLSGWLLR	8	Unmodified	_CLSGWLLR_					0	0	0		ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7503356933594	2	474.260205	946.505857	0.23503	0.00011147	2.2866	0.0010845	2.5217	0.0011959	474.2613570002159	31.266	0.4638	31.278	31.041	31.505	0.011797					26	10	3	0	0	0	0.027866	1	2039	2039		47.916	3.3845	1	493330			5467	12737	3306	3320	7109	7109					0.03046452607873107
CLSGWLLR	8	Unmodified	_CLSGWLLR_					0	0	0		ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	474.260205	946.505857	0.11017	5.2251E-05	2.594	0.0012302	2.7041	0.0012825	474.2613815866999	31.337	0.58006	31.337	31.089	31.669	0	0.12058	9.8281E-05	NaN	47.916	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409230			5468	12737	3306	3320							0.03046452607873107
CLSGWLLR	8	Unmodified	_CLSGWLLR_					0	0	0		ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	474.260205	946.505857	0.058632	2.7807E-05	2.5519	0.0012103	2.6105	0.0012381	474.2613836692711	30.961	0.50195	31.034	30.79	31.292	0.072868	-0.18244	5.8361E-05	NaN	47.916	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417810			5469	12737	3306	3320							0.03046452607873107
CLSHLSILSP	10	Unmodified	_CLSHLSILSP_					0	0	0			REV__LRRTM1|p.R231S|1|0.25|ENSG00000162951|chr2:80303129-80303129|G/T|missense_variant	REV__LRRTM1|p.R231S|1|0.25|ENSG00000162951|chr2:80303129-80303129|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2384033203125	2	535.289159	1068.56377	-0.58205	-0.00031157	-1.912	-0.0010235	-2.494	-0.001335	535.2882319238066	60.632	0.291	60.426	60.213	60.504	-0.20599					15	6	3	0	0	0	0.03519	1	6762	6762		42.396	0	1	126170	+		5470	36332	3307	3321	7110	7110					0.032226697426494866
CLSLYFGY	8	Unmodified	_CLSLYFGY_					0	0	0		ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	ENSG00000119714|ENST00000650645|GPR68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.238037109375	2	483.225497	964.43644	-0.87719	-0.00042388	-0.24843	-0.00012005	-1.1256	-0.00054393	483.22631767004503	40.445	0.18848	40.215	40.046	40.235	-0.23021					7	4	2	0	0	0	0.027866	1	3461	3461		46.766	7.9603	1	1169100			5471	3759	3308	3322	7111	7111					-0.04720051131539549
CLSQITHLN	9	Unmodified	_CLSQITHLN_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.790283203125	2	514.763309	1027.51206	-0.0040406	-2.08E-06	-0.34523	-0.00017771	-0.34927	-0.00017979	514.7631278898035	54.382	2.1611	54.48	53.94	56.102	0.098015					150	60	4	0	0	0	0.024466	1	5990	5990		39.253	13.803	1	1978800	+		5472	28501	3309	3323	7112	7112					-0.0005907395125177572
CLSRGVHFSFL	11	Unmodified	_CLSRGVHFSFL_					0	0	0			REV__ENST00000023939.8_1_20:55093354-55093432:+|nuORF	REV__ENST00000023939.8_1_20:55093354-55093432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.51318359375	3	422.553497	1264.63866	-0.098096	-4.1451E-05	-2.5991	-0.0010983	-2.6972	-0.0011397	422.55255588365117	31.556	0.11888	31.625	31.527	31.646	0.068962					4	2	2	0	0	0	0.024761	1	2052	2052		14.243	0.15724	1	25795	+		5473	29259	3310	3324	7113	7113					0.01692852273868084
CLTEPHTEV	9	Unmodified	_CLTEPHTEV_					0	0	0			REV__ENSG00000009724|ENST00000400897|MASP2	REV__ENSG00000009724|ENST00000400897|MASP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7897338867188	2	514.739499	1027.46445	-0.62174	-0.00032003	0.55381	0.00028507	-0.067924	-3.4963E-05	514.7398332785483	54.808	2.3427	54.906	53.94	56.283	0.098015					103	65	2	0	0	0	0.024457	1	6000	6000		21.96	0	1	378010	+		5474	19895	3311	3325	7114	7114					-0.04818772942121541
CLTSAQDFRA	10	Unmodified	_CLTSAQDFRA_					0	0	0		ENST00000248437.8_1_2:220115960-220116732:-|nuORF	ENST00000248437.8_1_2:220115960-220116732:-|nuORF	ENST00000248437.8_1_2:220115960-220116732:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.8184814453125	2	556.263673	1110.51279	-0.70613	-0.00039279	1.2542	0.00069769	0.54812	0.0003049	556.2642303446619	60.431	0.72084	60.178	59.977	60.697	-0.25373					28	17	2	0	0	0	0.03519	1	6747	6747		37.812	13.308	1	357540			5475	11334	3312	3326	7115	7115					-0.03804279302221403
CLTSWLDW	8	Unmodified	_CLTSWLDW_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2357177734375	2	512.233853	1022.45315	0.016275	8.3365E-06	2.2004	0.0011271	2.2167	0.0011355	512.2349931681874	57.601	0.677	57.41	57.112	57.789	-0.19018					49	17	4	0	0	0	0.95417	1	6293	6293		44.531	2.0566	1	3535000	+		5476	24641	3313	3327	7116	7116					-0.05717550245606162
CLVGEFVSDV	10	Unmodified	_CLVGEFVSDV_					0	0	0		APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2	APLP2-ST14|1|fusion	APLP2-ST14|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2597045898438	2	534.257525	1066.5005	-0.99452	-0.00053133	3.6353	0.0019422	2.6408	0.0014109	534.2596013368509	66.497	1.0065	66.273	65.577	66.584	-0.22374					63	26	5	0	0	0	0.67706	2	7644	7644;7657		68.787	10.005	1	6591700			5477	105	3314	3328	7117;7118	7117					-0.030093157652800073
CLVGEFVSDV	10	Unmodified	_CLVGEFVSDV_					0	0	0		APLP2-ST14|1|fusion;APLP2-ST14|2|fusion;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2	APLP2-ST14|1|fusion	APLP2-ST14|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2593994140625	2	534.257525	1066.5005	-0.81306	-0.00043438	2.3081	0.0012331	1.495	0.00079872	534.259466027847	66.477	0.8878	66.232	65.609	66.496	-0.24517					76	23	6	0	0	0	0.941	1	7630	7630		51.335	1.8939	1	6883800			5478	105	3314	3328	7119	7119					-0.030093157652800073
CLVPEEAKT	9	Unmodified	_CLVPEEAKT_					0	0	0		ENSG00000158863|ENST00000289921|FHIP2B	ENSG00000158863|ENST00000289921|FHIP2B	ENSG00000158863|ENST00000289921|FHIP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.288330078125	2	495.252243	988.489932	0.52578	0.0002604	-0.93942	-0.00046525	-0.41363	-0.00020485	495.2516337728678	58.752	1.3387	58.565	58.137	59.476	-0.18705					62	36	3	0	0	0	0.023837	1	6629	6629		45.972	8.1607	1	638320			5479	6708	3315	3329	7120	7120					-0.004772984196847574
CLVVFLVVS	9	Unmodified	_CLVVFLVVS_					0	0	0			REV__nc|ENSG00000155066|Q8N271-2|PROM2	REV__nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2642822265625	2	489.788264	977.561975	-0.22347	-0.00010945	3.8957	0.0019081	3.6722	0.0017986	489.79006809112144	50.877	1.7161	50.728	49.891	51.608	-0.14916					81	49	2	0	0	0	0.024418	1	5361	5361		37.028	0	1	990660	+		5480	24989	3316	3330	7121	7121					0.07229660724692621
CLWGGLLYII	10	Unmodified	_CLWGGLLYII_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.2412109375	2	575.820095	1149.62564	-0.034811	-2.0045E-05	0.36053	0.0002076	0.32572	0.00018756	576.322070109912	69.096	0.24985	68.853	68.666	68.916	-0.24277					8	5	2	0	0	0	0.03519	1	8008	8008		19.36	0	1	93733			5481	10133	3317	3331	7122	7122					0.05681021161763056
CLWRLPSC	8	Unmodified	_CLWRLPSC_					0	0	0			REV__ENST00000606217.1_1_3:44039594-44039894:-|nuORF	REV__ENST00000606217.1_1_3:44039594-44039894:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.7645568847656	2	489.238415	976.462278	-0.2913	-0.00014252	-2.4441	-0.0011957	-2.7354	-0.0013383	489.23798367502104	43.274	0.59756	43.037	42.719	43.317	-0.23736					32	15	3	0	0	0	0.027866	1	3925	3925		20.482	12.792	1	245930	+		5482	35928	3318	3332	7123	7123					-0.0268948016092736
CMAECLTPAIY	11	Carbamidomethyl (C),Oxidation (M)	_CM(Oxidation (M))AEC(Carbamidomethyl (C))LTPAIY_	CMAEC(1)LTPAIY	CM(1)AECLTPAIY	C(-48)MAEC(48)LTPAIY	CM(91)AECLTPAIY	0	1	1		ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	644.2716064453125	2	644.274535	1286.53452	-2.6226	-0.0016897	-0.82006	-0.00052834	-3.4427	-0.002218	644.2738949435368	48.247	0.98928	48.149	47.817	48.806	-0.097553					95	26	5	0	0	0	0.28197	3	4769	4769;4781;4808		90.777	19.333	2	6186000			5483	4545	3319	3333	7124;7125;7126	7124	58	179			-0.09728978660177745
CMAECLTPAIY	11	Carbamidomethyl (C),Oxidation (M)	_CM(Oxidation (M))AEC(Carbamidomethyl (C))LTPAIY_	CMAEC(1)LTPAIY	CM(1)AECLTPAIY	C(-48)MAEC(48)LTPAIY	CM(91)AECLTPAIY	0	1	1		ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	644.2722778320312	2	644.274535	1286.53452	-0.91449	-0.00058918	-2.551	-0.0016435	-3.4655	-0.0022327	644.2728186880615	48.6	1.0871	48.324	47.928	49.015	-0.27598					93	29	5	0	0	0	0.28197	3	4835	4812;4822;4835		90.777	39.584	2	5694200			5484	4545	3319	3333	7127;7128;7129	7129	58	179			-0.09728978660177745
CMAECLTPAIY	11	Carbamidomethyl (C),Oxidation (M)	_CM(Oxidation (M))AEC(Carbamidomethyl (C))LTPAIY_	CMAEC(1)LTPAIY	CM(1)AECLTPAIY	C(-53)MAEC(53)LTPAIY	CM(82)AECLTPAIY	0	1	1		ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	ENSG00000131730|ENST00000254035|CKMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	644.2728271484375	2	644.274535	1286.53452	-0.56226	-0.00036225	-2.8898	-0.0018618	-3.452	-0.002224	644.2726016945516	48.435	1.0538	48.249	47.863	48.917	-0.1865					91	28	5	0	0	0	0.40832	3	4789	4789;4800;4813		82.305	25.584	2	5768700			5485	4545	3319	3333	7130;7131;7132	7130	58	179			-0.09728978660177745
CMAVSPILY	9	Unmodified	_CMAVSPILY_					0	0	0		ENST00000339865.9_2_11:11863015-11863387:+|nuORF	ENST00000339865.9_2_11:11863015-11863387:+|nuORF	ENST00000339865.9_2_11:11863015-11863387:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7480163574219	2	498.748282	995.48201	0.016028	7.9938E-06	-0.98311	-0.00049033	-0.96708	-0.00048233	498.7476851713309	68.114	1.0852	67.876	67.466	68.552	-0.23814					68	26	4	0	0	0	0.33184	1	7838	7838		71.378	0	1	4524600			5486	12464	3320	3334	7133	7133					-0.0159114894082677
CMCVTVHSSY	10	Carbamidomethyl (C),Oxidation (M)	_CM(Oxidation (M))C(Carbamidomethyl (C))VTVHSSY_	C(0.073)MC(0.927)VTVHSSY	CM(1)CVTVHSSY	C(-11)MC(11)VTVHSSY	CM(82)CVTVHSSY	0	1	1		ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.7333374023438	2	601.735577	1201.4566	-0.93303	-0.00056144	-2.5603	-0.0015406	-3.4933	-0.0021021	601.733987082581	26.878	0.62305	26.636	26.372	26.995	-0.24217					47	14	5	0	0	0	0.55296	3	1429	1429;1438;1452		82.305	15.876	2	2051500			5487	14144	3321	3335	7134;7135;7136	7134	191	503			-0.13606991525534795
CMCVTVHSSY	10	Carbamidomethyl (C),Oxidation (M)	_CM(Oxidation (M))C(Carbamidomethyl (C))VTVHSSY_	C(0.073)MC(0.927)VTVHSSY	CM(1)CVTVHSSY	C(-11)MC(11)VTVHSSY	CM(82)CVTVHSSY	0	1	1		ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.733154296875	2	601.735577	1201.4566	-0.52381	-0.00031519	-3.0727	-0.0018489	-3.5965	-0.0021641	601.7336484098887	27.556	0.80893	27.314	26.954	27.763	-0.24217					49	18	4	0	0	0	0.55296	1	1537	1537		82.305	15.876	2	1530100			5488	14144	3321	3335	7137	7137	191	503			-0.13606991525534795
CMCVTVHSSY	10	Carbamidomethyl (C),Oxidation (M)	_CM(Oxidation (M))C(Carbamidomethyl (C))VTVHSSY_	C(0.079)MC(0.921)VTVHSSY	CM(1)CVTVHSSY	C(-11)MC(11)VTVHSSY	CM(74)CVTVHSSY	0	1	1		ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.7328491210938	2	601.735577	1201.4566	-0.7247	-0.00043608	-2.8411	-0.0017096	-3.5658	-0.0021457	601.7338341761283	26.696	0.58905	26.528	26.262	26.851	-0.16816					42	13	4	0	0	0	0.62679	2	1405	1405;1417		73.975	7.5455	2	950470			5489	14144	3321	3335	7138;7139	7138	191	503			-0.13606991525534795
CMCVTVHSSY	10	Carbamidomethyl (C),Oxidation (M)	_CM(Oxidation (M))C(Carbamidomethyl (C))VTVHSSY_					0	1	1		ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	ENST00000429416.7_3_19:11172600-11172933:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	601.735577	1201.4566	-1.0895	-0.0006556	-2.6789	-0.001612	-3.7685	-0.0022676	601.7340422398111	27.457	0.4306	27.289	27.057	27.487	-0.16816	-0.012643	0.00044598	NaN	82.305	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88527			5490	14144	3321	3335			191	503			-0.13606991525534795
CMHMHMCAH	9	Unmodified	_CMHMHMCAH_					0	0	0		ENST00000484751.1_1_7:66410067-66416200:+|nuORF	ENST00000484751.1_1_7:66410067-66416200:+|nuORF	ENST00000484751.1_1_7:66410067-66416200:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2583618164062	2	550.689395	1099.36424	0.31103	0.00017128	-2.1405	-0.0011787	-1.8294	-0.0010075	550.6879939481634	63.509	0.60041	63.25	63	63.601	-0.25824					29	15	3	0	0	0	0.024541	1	7217	7217		21.702	10.837	1	438640			5491	15311	3322	3336	7140	7140					-0.18147071344446886
CMNVRELL	8	Unmodified	_CMNVRELL_					0	0	0			REV__ENST00000514421.1_1_5:43388450-43412448:-|nuORF	REV__ENST00000514421.1_1_5:43388450-43412448:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.26580810546875	2	489.24898	976.483407	-1.0217	-0.00049984	-0.91705	-0.00044866	-1.9387	-0.00094851	489.2488818807785	55.974	0.4788	55.759	55.301	55.78	-0.21551					18	12	2	0	0	0	0.027866	1	5979	5979		83.287	6.4406	1	862790	+		5492	24802	3323	3337	7141	7141					-0.005775148520569928
CMPDMKGLSV	10	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))MPDM(Oxidation (M))KGLSV_	C(1)MPDMKGLSV	CM(0.031)PDM(0.969)KGLSV	C(75)MPDMKGLSV	CM(-15)PDM(15)KGLSV	0	1	1			REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2539672851562	2	577.256145	1152.49774	-0.956	-0.00055186	-2.1633	-0.0012488	-3.1193	-0.0018006	577.2546509481558	46.376	0.61704	46.173	45.855	46.472	-0.20226					39	16	3	0	0	0	0.61732	1	4457	4457		75.043	10.836	2	1586100	+		5493	26346	3324	3338	7142	7142	348	779			-0.07241230486056338
CMTDTESTGK	10	Unmodified	_CMTDTESTGK_					0	0	0			REV__CD40|p.I102M|1|0.3|ENSG00000101017|chr20:46122659-46122659|C/G|missense_variant	REV__CD40|p.I102M|1|0.3|ENSG00000101017|chr20:46122659-46122659|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7551879882812	2	536.717907	1071.42126	-1.1334	-0.00060832	0.48501	0.00026031	-0.6484	-0.00034801	536.7175814321497	38.359	0.16698	38.138	38.054	38.221	-0.22149					6	4	2	0	0	0	0.03519	1	3171	3171		40.778	0	1	77995	+		5494	19276	3325	3339	7143	7143					-0.11159330781697463
CMYLVTSAKSV	11	Unmodified	_CMYLVTSAKSV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.2049255371094	3	401.203365	1200.58827	4.3988	0.0017648	-1.1129	-0.0004465	3.2859	0.0013183	401.2028775463709	17.405	0.34763	17.155	16.974	17.322	-0.25049					17	6	4	0	0	0	1.096	1	163	163		12.433	0.22615	1	91996			5495	6479	3326	3340	7144	7144					-0.004004381661388834
CMYRVSLLI	9	Unmodified	_CMYRVSLLI_					0	0	0		ITIH1|p.L16R|1|0.17|ENSG00000055957|chr3:52777662-52777662|T/G|missense_variant	ITIH1|p.L16R|1|0.17|ENSG00000055957|chr3:52777662-52777662|T/G|missense_variant	ITIH1|p.L16R|1|0.17|ENSG00000055957|chr3:52777662-52777662|T/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.2967529296875	2	549.29593	1096.57731	-0.60516	-0.00033241	3.2841	0.0018039	2.6789	0.0014715	549.2975965845762	91.029	0.78319	90.905	90.673	91.456	-0.12341					40	18	3	0	0	0	0.43973	1	11173	11173		63.306	2.3343	1	502830			5496	17776	3327	3341	7145	7145					0.032882042502478726
CNFRVLSFL	9	Unmodified	_CNFRVLSFL_					0	0	0		nc|ENSG00000158296|Q8WWT9-2|SLC13A3	nc|ENSG00000158296|Q8WWT9-2|SLC13A3	nc|ENSG00000158296|Q8WWT9-2|SLC13A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.7907104492188	2	549.791869	1097.56919	-0.39547	-0.00021743	-2.21	-0.001215	-2.6054	-0.0014324	549.7895701348882	103.93	0.62637	103.93	103.71	104.33	0					46	14	4	0	0	0	0.59099	1	13333	13333		53.351	2.016	1	172630			5497	18415	3328	3342	7146	7146					0.02430393325107616
CNGLDLRVQP	10	Unmodified	_CNGLDLRVQP_					0	0	0			REV__ENSG00000179023|ENST00000400664|KLHDC7A	REV__ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.3057250976562	2	557.787315	1113.56008	-0.48022	-0.00026786	2.0201	0.0011268	1.5399	0.00085892	557.7891731322512	62.084	0.51069	61.857	61.573	62.084	-0.22663					20	13	2	0	0	0	0.03519	1	7152	7152		19.104	0	1	414060	+		5498	27228	3329	3343	7147	7147					0.007839999687803356
CNGLSYTLEY	10	Unmodified	_CNGLSYTLEY_					0	0	0		ENSG00000135070|ENST00000375991|ISCA1;nc|ENSG00000135070|Q9BUE6-2|ISCA1	ENSG00000135070|ENST00000375991|ISCA1	ENSG00000135070|ENST00000375991|ISCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.722900390625	2	581.757889	1161.50123	-1.5985	-0.00092997	3.0422	0.0017698	1.4436	0.00083983	581.7597787290763	37.86	0.37106	37.641	37.384	37.755	-0.21848					14	9	2	0	0	0	0.03519	1	3021	3021		62.107	0	1	83141			5499	4855	3330	3344	7148	7148					-0.0730652111622021
CNHPLILLP	9	Unmodified	_CNHPLILLP_					0	0	0			REV__ENST00000308488.10_1_11:77374192-77374351:-|nuORF	REV__ENST00000308488.10_1_11:77374192-77374351:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8858337402344	2	510.288963	1018.56337	0.20358	0.00010388	0.8777	0.00044788	1.0813	0.00055176	510.2901917472392	99.729	1.0061	99.724	98.81	99.816	-0.0050812					35	22	2	0	0	0	0.02309	1	12654	12654		57.811	0	1	46835	+		5500	30152	3331	3345	7149	7149					0.05483294813438988
CNMDVSLYY	9	Oxidation (M)	_CNM(Oxidation (M))DVSLYY_		CNM(1)DVSLYY		CNM(66)DVSLYY	0	0	1		ENST00000260408.7_1_15:58889119-58889260:-|nuORF	ENST00000260408.7_1_15:58889119-58889260:-|nuORF	ENST00000260408.7_1_15:58889119-58889260:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2261962890625	2	562.225368	1122.43618	0.1781	0.00010013	0.19718	0.00011086	0.37528	0.00021099	562.225290328442	56.705	0.77245	56.48	56.189	56.961	-0.2248					48	19	4	0	0	0	0.39228	2	6139	6139;6151		66.429	15.094	1	2422200			5501	11450	3332	3346	7150;7151	7150		467			-0.12013838913730979
CNMDVSLYY	9	Oxidation (M)	_CNM(Oxidation (M))DVSLYY_					0	0	1		ENST00000260408.7_1_15:58889119-58889260:-|nuORF	ENST00000260408.7_1_15:58889119-58889260:-|nuORF	ENST00000260408.7_1_15:58889119-58889260:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	562.225368	1122.43618	-0.22449	-0.00012621	0.64465	0.00036244	0.42016	0.00023622	562.2255189776262	56.606	0.76739	56.439	56.165	56.932	-0.1672	-0.045864	0.00037617	NaN	66.429	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2466600			5502	11450	3332	3346				467			-0.12013838913730979
CNVFIQGFLY	10	Unmodified	_CNVFIQGFLY_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.8657531738281	3	401.867082	1202.57942	-1.2846	-0.00051624	-1.9909	-0.00080007	-3.2755	-0.0013163	401.86613451506935	44.188	1.8436	43.969	43.597	45.441	-0.21939					136	50	4	0	0	0	1.1333	1	4099	4099		28.081	2.0181	1	2540300			5503	4976	3333	3347	7152	7152					-0.013770437403081814
CNVLSLGLL	9	Unmodified	_CNVLSLGLL_					0	0	0			REV__ENST00000488412.2_1_9:34648936-34649266:+|nuORF	REV__ENST00000488412.2_1_9:34648936-34649266:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.75885009765625	2	466.267696	930.520839	-0.5291	-0.0002467	-4.1548	-0.0019373	-4.6839	-0.002184	466.2654650456319	79.942	2.0184	79.942	79.405	81.423	0					62	48	2	0	0	0	0.024263	1	10092	10092		60.972	18.497	1	325890	+		5504	33644	3334	3348	7153	7153					0.05279899685194778
CNVLSLGLL	9	Unmodified	_CNVLSLGLL_					0	0	0			REV__ENST00000488412.2_1_9:34648936-34649266:+|nuORF	REV__ENST00000488412.2_1_9:34648936-34649266:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.267696	930.520839	-0.90803	-0.00042339	-3.1843	-0.0014847	-4.0923	-0.0019081	466.2659819221624	80.106	0.66977	79.954	79.715	80.385	-0.15169	0.021431	0.00081294	NaN	60.972	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278140	+		5505	33644	3334	3348							0.05279899685194778
CPAAFRLVSEL	11	Unmodified	_CPAAFRLVSEL_					0	0	0		ENSG00000179922|ENST00000325351|ZNF784;ENST00000591479.1_1_19:56133119-56135920:-|nuORF	ENSG00000179922|ENST00000325351|ZNF784	ENSG00000179922|ENST00000325351|ZNF784	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5514831542969	3	402.549753	1204.62743	0.65489	0.00026363	2.9113	0.0011719	3.5662	0.0014356	402.55098961488204	23.403	0.81689	23.223	22.79	23.607	-0.17989					45	18	3	0	0	0	0.81748	1	905	905		56.632	13.768	1	3570000			5506	8940	3335	3349	7154	7154					0.03330030179745336
CPAAPARPPLL	11	Unmodified	_CPAAPARPPLL_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|9|1|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|9|1|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|9|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8306884765625	2	553.312969	1104.61138	-0.27477	-0.00015203	-3.3606	-0.0018595	-3.6354	-0.0020115	553.3106652428007	89.309	1.0985	89.181	88.829	89.927	-0.12775					57	25	5	0	0	0	0.024793	1	10917	10917		31.53	5.9558	1	707560			5507	37993	3336	3350	7155	7155					0.063263687334711
CPAERSGH	8	Unmodified	_CPAERSGH_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7404479980469	2	428.690144	855.365735	-0.23079	-9.8938E-05	-2.636	-0.00113	-2.8668	-0.001229	428.6887398668709	22.669	0.41032	22.484	22.236	22.646	-0.18539					12	8	2	0	0	0	0.027866	1	796	796		38.806	12.01	1	30791			5508	7424	3337	3351	7156	7156					-0.06773331396493631
CPAKLKSPQ	9	Unmodified	_CPAKLKSPQ_					0	0	0		ENST00000374232.7_1_9:115632278-115632389:+|nuORF	ENST00000374232.7_1_9:115632278-115632389:+|nuORF	ENST00000374232.7_1_9:115632278-115632389:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7896423339844	2	486.27077	970.526987	-1.198	-0.00058255	-1.4013	-0.00068139	-2.5992	-0.0012639	486.2699089630942	55.065	0.93702	55.164	54.845	55.782	0.098015					59	25	3	0	0	0	0.024292	1	5947	5947		49.442	21.187	1	2821900			5509	13103	3338	3352	7157	7157					0.0405441791673411
CPAKLKSPQ	9	Unmodified	_CPAKLKSPQ_					0	0	0		ENST00000374232.7_1_9:115632278-115632389:+|nuORF	ENST00000374232.7_1_9:115632278-115632389:+|nuORF	ENST00000374232.7_1_9:115632278-115632389:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.27077	970.526987	-0.81882	-0.00039817	-1.7624	-0.000857	-2.5812	-0.0012552	486.26991913799253	55.302	0.67091	55.156	54.911	55.582	-0.14609	-0.043101	0.00058988	NaN	49.442	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458220			5510	13103	3338	3352							0.0405441791673411
CPAKLKSPQ	9	Unmodified	_CPAKLKSPQ_					0	0	0		ENST00000374232.7_1_9:115632278-115632389:+|nuORF	ENST00000374232.7_1_9:115632278-115632389:+|nuORF	ENST00000374232.7_1_9:115632278-115632389:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.27077	970.526987	-0.1462	-7.1091E-05	-2.6553	-0.0012912	-2.8015	-0.0013623	486.26948903951444	55.448	0.54382	55.218	54.927	55.471	-0.23087	0.018552	-0.00027848	NaN	49.442	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442930			5511	13103	3338	3352							0.0405441791673411
CPALRAWL	8	Unmodified	_CPALRAWL_					0	0	0			REV__ENST00000602919.1_1_5:133562230-133562359:+|nuORF	REV__ENST00000602919.1_1_5:133562230-133562359:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.25634765625	2	465.254923	928.495293	1.3734	0.000639	1.2134	0.00056456	2.5869	0.0012036	465.2555335000608	59.394	0.80378	59.194	58.923	59.727	-0.20016					81	21	5	0	0	0	0.85409	1	6773	6773		54.765	7.1073	1	14947000	+		5512	35891	3339	3353	7158	7158					0.02818469953422209
CPALRAWL	8	Unmodified	_CPALRAWL_					0	0	0			REV__ENST00000602919.1_1_5:133562230-133562359:+|nuORF	REV__ENST00000602919.1_1_5:133562230-133562359:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.256103515625	2	465.254923	928.495293	1.0038	0.00046704	1.5964	0.00074272	2.6002	0.0012098	465.25569371198	59.102	0.80449	59.188	58.813	59.617	0.085682					67	21	4	0	0	0	0.85409	1	6683	6683		54.765	8.8127	1	14951000	+		5513	35891	3339	3353	7159	7159					0.02818469953422209
CPAPPPPPLL	10	Unmodified	_CPAPPPPPLL_					0	0	0		ENST00000377044.8_2_9:74383313-74383778:-|nuORF	ENST00000377044.8_2_9:74383313-74383778:-|nuORF	ENST00000377044.8_2_9:74383313-74383778:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3230285644531	2	501.278063	1000.54157	-0.34353	-0.00017221	-4.2101	-0.0021104	-4.5536	-0.0022826	501.2756761744619	73.642	0.74806	73.377	72.977	73.725	-0.26479					35	18	3	0	0	0	0.03519	1	8685	8685		44.531	3.9584	1	378650			5514	13195	3340	3354	7160	7160					0.041324900648760376
CPARRGNQV	9	Unmodified	_CPARRGNQV_					0	0	0			REV__ENSG00000167113|ENST00000300452|COQ4	REV__ENSG00000167113|ENST00000300452|COQ4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7672119140625	2	500.758892	999.503231	0.22844	0.00011439	0.68068	0.00034086	0.90912	0.00045525	500.7592830172874	40.62	1.1149	40.62	40.281	41.396	0					49	31	3	0	0	0	0.024487	1	3563	3563		24.203	0	1	324460	+		5515	26107	3341	3355	7161	7161					0.003459972029304481
CPATDHPPLL	10	Unmodified	_CPATDHPPLL_					0	0	0			REV__ENST00000530381.1_1_11:67267285-67267396:-|nuORF	REV__ENST00000530381.1_1_11:67267285-67267396:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8164672851562	2	532.265684	1062.51682	-0.29707	-0.00015812	-4.2865	-0.0022816	-4.5836	-0.0024397	532.261705367741	87.077	1.0421	87.077	86.647	87.69	0					63	24	4	0	0	0	0.03519	1	10954	10954		73.975	22.639	1	1805100	+		5516	34536	3342	3356	7162	7162					-0.011941898085069624
CPCCPAHCCC	10	Unmodified	_CPCCPAHCCC_					0	0	0		nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7667846679688	2	520.140889	1038.26722	-0.69907	-0.00036361	-2.6738	-0.0013907	-3.3728	-0.0017543	520.1386727378872	47.375	0.33304	47.375	47.289	47.622	0					11	9	2	0	0	0	0.03519	1	4783	4783		3.6843	2.5889	1	63239			5517	5791	3343	3357	7163	7163					-0.25037801615758326
CPCLPSMCLIS	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))PC(Carbamidomethyl (C))LPSMCLIS_	C(1)PC(1)LPSMC(0.001)LIS		C(34)PC(34)LPSMC(-34)LIS		0	2	0		ENST00000401957.6_1_7:22233026-22233254:-|nuORF	ENST00000401957.6_1_7:22233026-22233254:-|nuORF	ENST00000401957.6_1_7:22233026-22233254:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.7776489257812	2	640.77893	1279.54331	0.39754	0.00025473	-2.5603	-0.0016406	-2.1627	-0.0013858	640.7772868742064	51.806	0.95059	51.659	51.336	52.287	-0.14735					71	26	4	0	0	0	0.84811	1	5493	5493		54.776	7.119	3	5931800			5518	13678	3344	3358	7164	7164	185;186				-0.0852832829534691
CPCVKVKIIS	10	Unmodified	_CPCVKVKIIS_					0	0	0			REV__nc|ENSG00000179242|P55283-2|CDH4	REV__nc|ENSG00000179242|P55283-2|CDH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.282958984375	2	545.31158	1088.60861	-0.0023129	-1.2613E-06	-1.0883	-0.00059344	-1.0906	-0.0005947	545.310879549059	50.895	0.22645	50.715	50.534	50.76	-0.18071					8	5	2	0	0	0	0.03519	1	5175	5175		49.442	23.867	1	291790	+		5519	27249	3345	3359	7165	7165					0.06784777284315169
CPDKVLGFGSD	11	Unmodified	_CPDKVLGFGSD_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2675170898438	2	569.265881	1136.51721	1.542	0.0008778	1.4309	0.00081459	2.9729	0.0016924	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.93459	1	837	837		49.536	0	1	2894000	+		5520	23897	3346	3360	7166	7166					-0.04558814879283091
CPECGQRFSQR	11	Unmodified	_CPECGQRFSQR_					0	0	0		nc|ENSG00000099326|P28698-2|MZF1;ENST00000600004.1_1_19:59073441-59074896:-|nuORF;MZF1|p.R617Efs*13|1|0.31|ENSG00000099326|chr19:58562428-58562429|-/C|frameshift_variant;ENSG00000099326|ENST00000215057|MZF1	nc|ENSG00000099326|P28698-2|MZF1	nc|ENSG00000099326|P28698-2|MZF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.5291748046875	3	437.529134	1309.56557	0.030478	1.3335E-05	-0.10471	-4.5813E-05	-0.07423	-3.2478E-05	437.52901442469056	31.885	0.57911	31.727	31.412	31.991	-0.15772					35	13	3	0	0	0	0.98082	1	2155	2155		41.08	3.5719	1	1402000			5521	2070	3347	3361	7167	7167					-0.07682644511078252
CPEERGSPP	9	Unmodified	_CPEERGSPP_					0	0	0			REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.21435546875	2	486.216192	970.41783	0.2656	0.00012914	-3.2864	-0.0015979	-3.0208	-0.0014688	486.2145138310673	101.61	2.0628	101.48	100.65	102.72	-0.12576					137	50	3	0	0	0	0.85329	1	12662	12662		35.618	0.41757	1	181460	+		5522	28240	3348	3362	7168	7168					-0.06856212773402603
CPESTVPHLEG	11	Unmodified	_CPESTVPHLEG_					0	0	0			REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3238525390625	2	584.768788	1167.52302	-1.1258	-0.00065835	3.4704	0.0020294	2.3445	0.001371	584.7708016045942	44.497	0.45544	44.392	44.134	44.589	-0.10468					19	11	2	0	0	0	0.024044	1	4183	4183		77.318	0	1	388260	+		5523	34660	3349	3363	7169	7169					-0.054037163676639466
CPESTVPHLEG	11	Unmodified	_CPESTVPHLEG_					0	0	0			REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	584.768788	1167.52302	-2.2835	-0.0013353	4.6528	0.0027208	2.3693	0.0013855	584.7713650996781	44.284	0.4634	44.284	44.022	44.485	0	-0.055665	0.00064259	NaN	77.318	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506320	+		5524	34660	3349	3363							-0.054037163676639466
CPESTVPHLEG	11	Unmodified	_CPESTVPHLEG_					0	0	0			REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	584.768788	1167.52302	-2.2802	-0.0013334	4.2433	0.0024814	1.9632	0.001148	584.77117437403	44.409	0.49621	44.264	44.065	44.561	-0.14471	-0.075564	0.00016366	NaN	77.318	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487690	+		5525	34660	3349	3363							-0.054037163676639466
CPESTVPHLEG	11	Unmodified	_CPESTVPHLEG_					0	0	0			REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	584.768788	1167.52302	0.13989	8.1806E-05	0.86521	0.00050595	1.0051	0.00058775	584.7684705152323	44.301	0.6088	44.338	44.072	44.681	0.036903	-0.0016947	-0.0037872	NaN	77.318	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469660	+		5526	34660	3349	3363							-0.054037163676639466
CPFHPPERF	9	Unmodified	_CPFHPPERF_					0	0	0			REV__ENSG00000143344|ENST00000360851|RGL1	REV__ENSG00000143344|ENST00000360851|RGL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.3143310546875	2	565.266019	1128.51748	0.47837	0.00027041	2.23	0.0012606	2.7084	0.001531	565.2671101922379	59.119	0.64492	58.938	58.75	59.395	-0.18133					24	15	2	0	0	0	0.024523	1	6571	6571		21.96	0	1	202580	+		5527	24229	3350	3364	7170	7170					-0.041633503687990014
CPFKMSIVV	9	Unmodified	_CPFKMSIVV_					0	0	0			REV__ENST00000452079.5_2_1:3656745-3659715:-|nuORF	REV__ENST00000452079.5_2_1:3656745-3659715:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2709350585938	2	512.271924	1022.52929	-1.3044	-0.00066821	-0.70609	-0.00036171	-2.0105	-0.0010299	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.97516	1	13335	13335		25.45	0	1	5095800	+		5528	32731	3351	3365	7171	7171					0.01893130330176973
CPGAARHI	8	Unmodified	_CPGAARHI_					0	0	0			REV__ENST00000490428.5_1_20:13976436-14665616:+|nuORF	REV__ENST00000490428.5_1_20:13976436-14665616:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.71343994140625	2	412.713422	823.412291	0.34278	0.00014147	-0.93057	-0.00038406	-0.58779	-0.00024259	412.71294569661325	73.028	1.0619	73.028	72.454	73.516	0					63	26	4	0	0	0	1.0574	1	8920	8920		26.796	5.0938	1	4245300	+		5529	26654	3352	3366	7172	7172					-0.006478467745637317
CPGAARHI	8	Unmodified	_CPGAARHI_					0	0	0			REV__ENST00000490428.5_1_20:13976436-14665616:+|nuORF	REV__ENST00000490428.5_1_20:13976436-14665616:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.71307373046875	2	412.713422	823.412291	0.28441	0.00011738	-0.86523	-0.00035709	-0.58082	-0.00023971	412.71296447434673	73.078	1.5698	73.088	71.988	73.558	0.0096512					84	39	4	0	0	0	1.0572	1	8856	8856		28.254	4.0515	1	3549300	+		5530	26654	3352	3366	7173	7173					-0.006478467745637317
CPGEMRKP	8	Unmodified	_CPGEMRKP_					0	0	0		ENST00000265382.7_1_9:71320618-71357449:+|nuORF	ENST00000265382.7_1_9:71320618-71357449:+|nuORF	ENST00000265382.7_1_9:71320618-71357449:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2690124511719	2	459.220223	916.425892	-0.46958	-0.00021564	-2.0234	-0.0009292	-2.493	-0.0011448	459.219226606235	48.278	0.40818	48.125	47.989	48.398	-0.15301					19	11	2	0	0	0	0.027866	1	4889	4889		52.299	5.5327	1	149260			5531	11593	3353	3367	7174	7174					-0.03566357057627556
CPGPAPLR	8	Unmodified	_CPGPAPLR_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.7187194824219	2	405.718173	809.421793	0.61547	0.00024971	1.0359	0.0004203	1.6514	0.00067	405.7184931550817	73.026	0.77895	73.026	72.698	73.477	0					58	19	4	0	0	0	0.94001	3	8885	8885;8909;8921		46.766	9.738	1	3894700			5532	1229	3354	3368	7175;7176;7177	7175					0.00945921510970038
CPGPAPLR	8	Unmodified	_CPGPAPLR_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.7187194824219	2	405.718173	809.421793	0.42064	0.00017066	1.1539	0.00046818	1.5746	0.00063884	405.71855832902037	73.378	0.77773	73.107	72.76	73.538	-0.27126					56	19	4	0	0	0	0.94001	2	8905	8905;8945		46.766	9.738	1	4597900			5533	1229	3354	3368	7178;7179	7178					0.00945921510970038
CPGPAPLR	8	Unmodified	_CPGPAPLR_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7188720703125	2	405.718173	809.421793	1.6713	0.00067809	-0.0029485	-1.1963E-06	1.6684	0.00067689	405.71806219824936	73.068	0.82208	73.077	72.735	73.558	0.0096512					63	20	4	0	0	0	0.94001	2	8823	8823;8836		46.766	19.97	1	4234500			5534	1229	3354	3368	7180;7181	7180					0.00945921510970038
CPGPIWEDL	9	Unmodified	_CPGPIWEDL_					0	0	0			REV__ENST00000528856.5_1_11:34073295-34118749:+|nuORF	REV__ENST00000528856.5_1_11:34073295-34118749:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3132934570312	2	515.239135	1028.46372	-0.14495	-7.4684E-05	3.0783	0.0015861	2.9334	0.0015114	515.2402786887781	67.954	0.64651	67.973	67.707	68.353	0.018913					19	16	2	0	0	0	0.024517	1	8088	8088		19.36	1.0356	1	129150	+		5535	34505	3355	3369	7182	7182					-0.04937567591196057
CPHFRITVP	9	Unmodified	_CPHFRITVP_					0	0	0		nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.238525390625	2	535.284211	1068.55387	-0.50614	-0.00027093	-3.5064	-0.0018769	-4.0125	-0.0021478	535.2819172907326	60.757	0.42853	60.551	60.421	60.849	-0.20599					14	10	2	0	0	0	0.024205	1	6789	6789		73.975	17.254	1	141810			5536	18248	3356	3370	7183	7183					0.022335265279025407
CPHPQILRG	9	Unmodified	_CPHPQILRG_					0	0	0		nc|ENSG00000117322|P20023-2|CR2;nc|ENSG00000117322|P20023|CR2;nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2	nc|ENSG00000117322|P20023-2|CR2	nc|ENSG00000117322|P20023-2|CR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7692565917969	2	510.774011	1019.53347	0.47952	0.00024493	-0.13433	-6.8612E-05	0.34519	0.00017631	511.2758753737807	85.985	0.4681	85.985	85.789	86.257	0					18	10	3	0	0	0	0.024	1	10833	10833		76.847	21.342	1	388700			5537	3622	3357	3371	7184	7184					0.024483558681140494
CPIETPLVV	9	Unmodified	_CPIETPLVV_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-4|BANK1	REV__nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7659606933594	2	485.767529	969.520504	-0.15667	-7.6105E-05	-2.0628	-0.0010021	-2.2195	-0.0010782	485.76576155758977	101.87	2.4627	101.86	100.72	103.18	-0.0054474					70	57	2	0	0	0	0.90698	1	12984	12984		31.955	2.8053	1	378150	+		5538	24882	3358	3372	7185	7185					0.03452479965369548
CPIFYCLQDI	10	Unmodified	_CPIFYCLQDI_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;ENST00000486261.5_1_7:91865725-91870409:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.7803955078125	2	607.782853	1213.55115	-1.6929	-0.0010289	-3.4252	-0.0020818	-5.1181	-0.0031107	608.281948010469	55.781	2.0892	55.624	54.597	56.687	-0.15656					137	55	5	0	0	0	1.0271	1	6049	6049		42.396	4.5846	1	2503700			5539	724	3359	3373	7186	7186					-0.04708109711918951
CPIFYCLQDI	10	Unmodified	_CPIFYCLQDI_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;ENST00000486261.5_1_7:91865725-91870409:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MSMS	OPSCC_40_ClassI_Rep-3	6	607.7810668945312	2	607.782853	1213.55115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.102	1	55.887	55.387	56.387	-0.21551								0	0	0	0.7491	1	6047	6047		42.396	3.6425	1				5540	724	3359	3373	7187	7187					-0.04708109711918951
CPIFYCLQDI	10	Unmodified	_CPIFYCLQDI_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;ENST00000486261.5_1_7:91865725-91870409:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MSMS	OPSCC_40_ClassI_Rep-3	6	607.7803955078125	2	607.782853	1213.55115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.176	1	55.96	55.46	56.46	-0.21551								0	0	0	0.77371	1	6059	6059		56.721	8.7615	1				5541	724	3359	3373	7188	7188					-0.04708109711918951
CPIPAGPR	8	Unmodified	_CPIPAGPR_					0	0	0		ENST00000531734.5_2_1:110162799-110168306:+|nuORF	ENST00000531734.5_2_1:110162799-110168306:+|nuORF	ENST00000531734.5_2_1:110162799-110168306:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7188720703125	2	405.718173	809.421793	1.6713	0.00067809	-0.0029485	-1.1963E-06	1.6684	0.00067689	405.71806219824936	73.068	0.82208	73.077	72.735	73.558	0.0096512					63	20	4	0	0	0	0.98906	1	8814	8814		39.021	1.993	1	4234500			5542	16268	3360	3374	7189	7189					0.00945921510970038
CPIWNVEPD	9	Unmodified	_CPIWNVEPD_					0	0	0			REV__VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	REV__VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.832763671875	2	536.742042	1071.46953	-0.60177	-0.000323	-2.2952	-0.0012319	-2.897	-0.0015549	536.7406070630606	78.288	0.68717	78.133	77.87	78.557	-0.15591					21	15	2	0	0	0	0.024436	1	9340	9340		38.806	12.113	1	132300	+		5543	21990	3361	3375	7190	7190					-0.06334469079502014
CPKPVAGRR	9	Unmodified	_CPKPVAGRR_					0	0	0		ENST00000568818.1_1_16:69964069-69965708:+|nuORF	ENST00000568818.1_1_16:69964069-69965708:+|nuORF	ENST00000568818.1_1_16:69964069-69965708:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.787353515625	2	492.282003	982.549453	-0.87293	-0.00042973	-1.755	-0.00086393	-2.6279	-0.0012937	492.2812588632844	43.773	0.21126	43.628	43.534	43.745	-0.14471					8	5	2	0	0	0	0.024436	1	4101	4101		30.504	11.144	1	39918			5544	16994	3362	3376	7191	7191					0.057480621050103764
CPKREGLKEL	10	Unmodified	_CPKREGLKEL_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.8234252929688	2	586.82644	1171.63833	-0.37343	-0.00021914	-3.9991	-0.0023468	-4.3725	-0.0025659	586.8239606911613	109.53	0.42506	109.41	109.24	109.67	-0.12453					51	19	4	0	0	0	1.0616	1	13486	13486		37.812	1.3648	1	3447900	+		5545	20132	3363	3377	7192	7192					0.05937432554037514
CPKREGLKEL	10	Unmodified	_CPKREGLKEL_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	586.82644	1171.63833	-0.15838	-9.2939E-05	-4.1819	-0.0024541	-4.3403	-0.002547	586.8236944237968	109.47	0.39652	109.47	109.31	109.71	0	0.034581	-0.00048187	NaN	37.812	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297650	+		5546	20132	3363	3377							0.05937432554037514
CPKREGLKEL	10	Unmodified	_CPKREGLKEL_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	586.82644	1171.63833	-0.37343	-0.00021914	-3.9991	-0.0023468	-4.3725	-0.0025659	586.8239606911613	109.53	0.42506	109.41	109.24	109.67	-0.12453	-0.025785	-0.00026723	NaN	37.812	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3447900	+		5547	20132	3363	3377							0.05937432554037514
CPKREGLKEL	10	Unmodified	_CPKREGLKEL_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	586.82644	1171.63833	-2.0197	-0.0011852	-2.6511	-0.0015557	-4.6708	-0.0027409	586.8247225372909	109.58	0.48759	109.44	109.27	109.76	-0.13821	0.0074207	0.0013149	NaN	37.812	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2783800	+		5548	20132	3363	3377							0.05937432554037514
CPKREGLKEL	10	Unmodified	_CPKREGLKEL_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	586.82644	1171.63833	0.011263	6.6096E-06	-4.5341	-0.0026608	-4.5229	-0.0026541	586.8235572630676	109.57	0.50529	109.42	109.25	109.76	-0.14889	-0.016217	-0.00089523	NaN	37.812	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3210000	+		5549	20132	3363	3377							0.05937432554037514
CPKVPIFKPLP	11	Unmodified	_CPKVPIFKPLP_					0	0	0			REV__nc|ENSG00000227500|Q969E2-3|SCAMP4	REV__nc|ENSG00000227500|Q969E2-3|SCAMP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	620.3711547851562	2	619.87012	1237.72569	-0.22332	-0.00013843	-0.64358	-0.00039893	-0.86689	-0.00053736	619.8694138737308	104.71	0.52811	104.71	104.42	104.95	0					38	15	4	0	0	0	1.0442	1	13458	13458		26.693	4.733	1	233400	+		5550	28884	3364	3378	7193	7193					0.11633258495589871
CPLCHVLGL	9	Unmodified	_CPLCHVLGL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2821960449219	2	477.748616	953.482679	0.45566	0.00021769	-1.3795	-0.00065904	-0.9238	-0.00044134	477.74787511209394	50.607	0.72595	50.607	50.341	51.067	0					43	20	3	0	0	0	0.024389	1	5302	5302		49.211	6.8147	1	1437800	+		5551	20424	3365	3379	7194	7194					0.004076904988892238
CPLCHVLGL	9	Unmodified	_CPLCHVLGL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.748616	953.482679	0.66255	0.00031653	-1.9971	-0.00095409	-1.3345	-0.00063756	477.7476847940257	50.721	0.37166	50.609	50.451	50.823	-0.11163	-0.034411	-0.00073798	NaN	49.211	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344810	+		5552	20424	3365	3379							0.004076904988892238
CPLCHVLGL	9	Unmodified	_CPLCHVLGL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.748616	953.482679	0.28287	0.00013514	-1.9739	-0.00094303	-1.691	-0.00080789	477.7476512438083	51.004	0.48576	50.728	50.443	50.929	-0.27643	0.084293	-0.00071586	NaN	49.211	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278930	+		5553	20424	3365	3379							0.004076904988892238
CPLCHVLGL	9	Unmodified	_CPLCHVLGL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.748616	953.482679	0.57736	0.00027583	-2.0288	-0.00096924	-1.4514	-0.0006934	477.74773466524965	50.856	0.40995	50.675	50.498	50.908	-0.18071	0.031266	-0.00076828	NaN	49.211	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408420	+		5554	20424	3365	3379							0.004076904988892238
CPLHPALSQ	9	Unmodified	_CPLHPALSQ_					0	0	0		ENST00000464298.5_1_2:85921549-85922470:+|nuORF	ENST00000464298.5_1_2:85921549-85922470:+|nuORF	ENST00000464298.5_1_2:85921549-85922470:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2691955566406	2	483.247295	964.480036	-0.38872	-0.00018785	1.0039	0.00048514	0.61519	0.00029729	483.2490581358314	46.453	0.39627	46.251	46.044	46.441	-0.20226					22	10	3	0	0	0	0.02435	1	4438	4438		34.173	0	1	504590			5555	14756	3366	3380	7195	7195					-0.003624416344223391
CPLIDVKL	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PLIDVKL_	C(1)PLIDVKL		C(66)PLIDVKL		0	1	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|43|1|anti-sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|43|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.278076171875	2	479.275521	956.536489	0.51466	0.00024666	3.7322	0.0017887	4.2468	0.0020354	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.71833	1	10461	10461		65.803	10.299	1	4752300	+		5556	36100	3367	3381	7196	7196	466				0.0564818620226788
CPLLEQLNI	9	Unmodified	_CPLLEQLNI_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.30517578125	2	521.78371	1041.55287	-0.84649	-0.00044168	-2.3097	-0.0012052	-3.1562	-0.0016469	521.7808275088812	82.174	1.2684	82.174	81.869	83.138	0					65	29	5	0	0	0	0.024292	1	10308	10308		58.782	7.4465	1	851250			5557	2887	3368	3382	7197	7197					0.03375267368346613
CPLLEQLNI	9	Unmodified	_CPLLEQLNI_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.78371	1041.55287	0.23805	0.00012421	-1.4	-0.00073051	-1.162	-0.0006063	522.2861865524291	82.254	0.60257	82.033	81.701	82.304	-0.22015	-0.05479	0.0015416	NaN	58.782	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209960			5558	2887	3368	3382							0.03375267368346613
CPLLEQLNI	9	Unmodified	_CPLLEQLNI_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.78371	1041.55287	0.34156	0.00017822	-3.7543	-0.0019589	-3.4127	-0.0017807	521.7802601586134	82.171	0.68695	81.991	81.731	82.418	-0.18079	-0.097533	-0.00091519	NaN	58.782	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117150			5559	2887	3368	3382							0.03375267368346613
CPLNNFALN	9	Unmodified	_CPLNNFALN_					0	0	0			REV__ENSG00000174004|ENST00000328557|NRROS	REV__ENSG00000174004|ENST00000328557|NRROS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7910461425781	2	503.244752	1004.47495	-1.2605	-0.00063432	-2.3982	-0.0012069	-3.6587	-0.0018412	503.2435227454366	62.547	0.71393	62.308	62.107	62.821	-0.23926					26	20	2	0	0	0	0.024325	1	7277	7277		40.573	0	1	3887500	+		5560	26826	3369	3383	7198	7198					-0.027107454970291656
CPLRSLEQS	9	Unmodified	_CPLRSLEQS_					0	0	0			REV__ENST00000530788.1_1_11:105881770-105892939:-|nuORF	REV__ENST00000530788.1_1_11:105881770-105892939:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2738647460938	2	516.760766	1031.50698	-0.70626	-0.00036497	-1.2019	-0.00062111	-1.9082	-0.00098608	516.7597565800029	45.703	0.37798	45.747	45.58	45.958	0.04388					17	10	2	0	0	0	0.024319	1	4386	4386		56.721	7.2795	1	308510	+		5561	34542	3370	3384	7199	7199					-0.007513778138900307
CPLSCLLSI	9	Unmodified	_CPLSCLLSI_					0	0	0		ENST00000491252.5_1_2:74710449-74717828:+|nuORF;ENST00000489152.5_1_2:74710222-74717828:+|nuORF	ENST00000491252.5_1_2:74710449-74717828:+|nuORF	ENST00000491252.5_1_2:74710449-74717828:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7694091796875	2	474.748282	947.48201	0.19869	9.4325E-05	3.7666	0.0017882	3.9653	0.0018825	474.74987504831205	22.462	0.88189	22.387	22.13	23.011	-0.075296					37	18	3	0	0	0	0.024294	1	776	776		55.504	2.1528	1	163960			5562	15401	3371	3385	7200	7200					0.006168510591919585
CPLSFGEGVEF	11	Unmodified	_CPLSFGEGVEF_					0	0	0		ENSG00000183688|ENST00000329099|RFLNB;nc|ENSG00000183688|Q8N5W9|RFLNB	ENSG00000183688|ENST00000329099|RFLNB	ENSG00000183688|ENST00000329099|RFLNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.770751953125	2	592.768257	1183.52196	-0.7553	-0.00044772	3.4794	0.0020625	2.7241	0.0016148	592.7700866215583	70.904	0.78447	70.647	70.379	71.164	-0.25713					40	19	3	0	0	0	0.6558	1	8268	8268		66.429	0	1	1545700			5563	9260	3372	3386	7201	7201					-0.06245930736531591
CPLSSPKGVL	10	Unmodified	_CPLSSPKGVL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1;nc|ENSG00000121057|Q92667-2|AKAP1;AKAP1|p.V630Cfs*77|1|0.44|ENSG00000121057|chr17:57111835-57111836|-/T|frameshift_variant	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MSMS	OPSCC_39_ClassI_Rep-1	1	500.77642822265625	2	500.778428	999.542302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.702	1	79.702	79.202	80.202	0								0	0	0	0.25093	1	9892	9892		79.713	0.26157	1				5564	3851	3373	3387	7202	7202					0.042512847139278165
CPLSTYCLL	9	Unmodified	_CPLSTYCLL_					0	0	0			REV__ENST00000303296.8_1_11:33378294-33378417:+|nuORF	REV__ENST00000303296.8_1_11:33378294-33378417:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8414001464844	2	506.745739	1011.47692	-1.0925	-0.0005536	0.42034	0.00021301	-0.67211	-0.00034059	506.7458356670086	65.792	0.45595	65.579	65.338	65.794	-0.21327					23	10	3	0	0	0	0.024487	1	7531	7531		31.955	5.1588	1	230350	+		5565	30090	3374	3388	7203	7203					-0.028354528034356008
CPLWQVHTVW	10	Unmodified	_CPLWQVHTVW_					0	0	0		ENST00000371712.3_1_9:139323637-139324123:-|nuORF	ENST00000371712.3_1_9:139323637-139324123:-|nuORF	ENST00000371712.3_1_9:139323637-139324123:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.5472412109375	3	423.546343	1267.6172	-0.7139	-0.00030237	2.6867	0.001138	1.9728	0.00083559	423.547405743536	29.425	0.89797	29.18	28.838	29.736	-0.24524					55	20	4	0	0	0	1.0002	1	1800	1800		45.972	0.95004	1	1028400			5566	13011	3375	3389	7204	7204					-0.005905327548589412
CPMKCTSGQL	10	Unmodified	_CPMKCTSGQL_					0	0	0		ENST00000460419.1_1_3:182988262-182988364:+|nuORF	ENST00000460419.1_1_3:182988262-182988364:+|nuORF	ENST00000460419.1_1_3:182988262-182988364:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2351684570312	2	534.237755	1066.46096	-0.34514	-0.00018439	-2.9718	-0.0015877	-3.317	-0.001772	534.2359601468546	58.259	0.62697	58.351	58.118	58.745	0.091217					48	16	5	0	0	0	1.0508	1	6530	6530		39.253	0.44669	1	2911100			5567	14652	3376	3390	7205	7205					-0.06961482311976397
CPMLRGIIM	9	Oxidation (M)	_CPMLRGIIM(Oxidation (M))_		CPMLRGIIM(1)		CPM(-64)LRGIIM(64)	0	0	1		ENST00000518287.6_1_8:71071881-71074978:-|nuORF	ENST00000518287.6_1_8:71071881-71074978:-|nuORF	ENST00000518287.6_1_8:71071881-71074978:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2669067382812	2	525.268858	1048.52316	0.42564	0.00022358	-4.2973	-0.0022572	-3.8716	-0.0020337	525.266294228485	83.721	1.2826	83.509	82.79	84.073	-0.21159					62	28	4	0	0	0	0.33184	1	10107	10107		71.378	8.0716	2	980620			5568	15927	3377	3391	7206	7206		529			0.0008428882699718088
CPMQHITLQ	9	Unmodified	_CPMQHITLQ_					0	0	0			REV__ENSG00000001036|ENST00000002165|FUCA2	REV__ENSG00000001036|ENST00000002165|FUCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.806884765625	2	535.759712	1069.50487	0.089587	4.7997E-05	-2.9797	-0.0015964	-2.8901	-0.0015484	535.7577466774765	71.994	1.5421	71.706	70.998	72.54	-0.28858					54	39	2	0	0	0	0.024292	1	8726	8726		58.782	0	1	212360	+		5569	19755	3378	3392	7207	7207					-0.02710129823344687
CPNTAMTPPLY	11	Unmodified	_CPNTAMTPPLY_					0	0	0			REV__ENST00000373039.4_1_20:42223372-42225079:+|nuORF	REV__ENST00000373039.4_1_20:42223372-42225079:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.1878662109375	3	403.187715	1206.54132	1.3195	0.00053202	-0.71612	-0.00028873	0.60341	0.00024329	403.1873786584931	36.456	0.75258	36.257	35.943	36.696	-0.19829					60	18	5	0	0	0	0.98082	1	2850	2850		41.08	1.0219	1	1818200	+		5570	31227	3379	3393	7208	7208					-0.05369297717288646
CPPCPDTRGRA	11	Unmodified	_CPPCPDTRGRA_					0	0	0		ENSG00000185761|ENST00000330475|ADAMTSL5;nc|ENSG00000185761|Q6ZMM2|ADAMTSL5;nc|ENSG00000185761|Q6ZMM2-2|ADAMTSL5	ENSG00000185761|ENST00000330475|ADAMTSL5	ENSG00000185761|ENST00000330475|ADAMTSL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7705688476562	2	586.7686	1171.52265	0.30602	0.00017956	2.2815	0.0013387	2.5875	0.0015183	586.7696825708855	79.589	0.91988	79.343	78.987	79.907	-0.2465					55	21	4	0	0	0	0.53206	1	9496	9496		74.255	13.283	1	2308400			5571	9472	3380	3394	7209	7209					-0.056254145684988544
CPPCPDTRGRA	11	Unmodified	_CPPCPDTRGRA_					0	0	0		ENSG00000185761|ENST00000330475|ADAMTSL5;nc|ENSG00000185761|Q6ZMM2|ADAMTSL5;nc|ENSG00000185761|Q6ZMM2-2|ADAMTSL5	ENSG00000185761|ENST00000330475|ADAMTSL5	ENSG00000185761|ENST00000330475|ADAMTSL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.7699584960938	2	586.7686	1171.52265	-0.40029	-0.00023488	2.6665	0.0015646	2.2662	0.0013297	586.7699324886055	79.489	0.9594	79.339	78.779	79.738	-0.15051					52	22	4	0	0	0	0.32544	2	9507	9496;9507		87.696	10.922	1	2366200			5572	9472	3380	3394	7210;7211	7211					-0.056254145684988544
CPPFLLVHA	9	Unmodified	_CPPFLLVHA_					0	0	0		ENST00000472558.6_1_12:6658018-6658174:-|nuORF	ENST00000472558.6_1_12:6658018-6658174:-|nuORF	ENST00000472558.6_1_12:6658018-6658174:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7706604003906	2	498.770406	995.526258	0.041478	2.0688E-05	1.3381	0.00066742	1.3796	0.00068811	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	0.80342	1	13154	13154		39.021	3.4032	1	3882100			5573	14992	3381	3395	7212	7212					0.02831623267672967
CPPGTLGVL	9	Unmodified	_CPPGTLGVL_					0	0	0		ENSG00000074181|ENST00000263388|NOTCH3;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant;NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant	ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.1899719238281	2	428.733489	855.452425	1.5889	0.00068119	2.7128	0.0011631	4.3016	0.0018443	428.73450880670686	25.023	0.6459	24.851	24.513	25.159	-0.17151					27	14	3	0	0	0	0.024386	1	1128	1128		25.45	12.491	1	85241			5574	1524	3382	3396	7213	7213					0.018916551053507646
CPPGTLGVL	9	Unmodified	_CPPGTLGVL_					0	0	0		ENSG00000074181|ENST00000263388|NOTCH3;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant;NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant	ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	428.733489	855.452425	-1.0545	-0.00045211	5.2189	0.0022375	4.1644	0.0017854	428.73544558764274	25.102	0.66516	25.068	24.727	25.392	-0.034397	0.071196	0.0005757	NaN	18.324	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36231			5575	1524	3382	3396							0.018916551053507646
CPPLEPAKL	9	Unmodified	_CPPLEPAKL_					0	0	0		nc|ENSG00000116260|O00391-2|QSOX1;ENSG00000116260|ENST00000367602|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.79254150390625	2	484.267696	966.520839	-0.47478	-0.00022992	-0.62814	-0.00030419	-1.1029	-0.00053411	484.2701359900734	83.559	0.34072	83.469	83.385	83.725	-0.090454					13	7	2	0	0	0	0.024294	1	10441	10441		37.159	0	1	56901			5576	3540	3383	3397	7214	7214					0.036238996851921
CPPLRSVEPP	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PPLRSVEPP_	C(1)PPLRSVEPP		C(46)PPLRSVEPP		0	1	0			REV__KMT2D|p.S654Pfs*276|1|0.42|ENSG00000167548|chr12:49051723-49051723|A/-|frameshift_variant	REV__KMT2D|p.S654Pfs*276|1|0.42|ENSG00000167548|chr12:49051723-49051723|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.2987060546875	2	576.297516	1150.58048	0.1793	0.00010333	2.6606	0.0015333	2.8399	0.0016366	576.2988832466169	19.71	0.58503	19.549	19.331	19.916	-0.16079					25	11	4	0	0	0	1.0002	1	458	458		45.972	6.7194	1	483770	+		5577	36192	3384	3398	7215	7215	467				0.011211706285848777
CPPRPLPCV	9	Unmodified	_CPPRPLPCV_					0	0	0		ENST00000370210.3_2_X:152736080-152736602:-|nuORF	ENST00000370210.3_2_X:152736080-152736602:-|nuORF	ENST00000370210.3_2_X:152736080-152736602:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.3365478515625	2	491.254065	980.493578	1.1261	0.00055319	1.2601	0.00061902	2.3862	0.0011722	491.254232873728	83.185	0.94415	83.094	82.356	83.3	-0.090454					32	21	2	0	0	0	0.024535	1	10333	10333		33.516	8.0654	1	71314			5578	12949	3385	3399	7216	7216					0.0025509287315799156
CPPVTQSPL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PPVTQSPL_	C(1)PPVTQSPL		C(79)PPVTQSPL		0	1	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7666931152344	2	499.75241	997.490267	0.34997	0.0001749	3.4907	0.0017445	3.8407	0.0019194	499.7544544760845	41.739	0.14118	41.739	41.652	41.793	0					5	3	2	0	0	0	0.021088	1	3777	3777		79.451	38.878	1	167400			5579	587	3386	3400	7217	7217	8				-0.008578786998214127
CPPWARSLV	9	Unmodified	_CPPWARSLV_					0	0	0			REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7701416015625	2	514.770937	1027.52732	-0.58809	-0.00030273	2.7007	0.0013902	2.1126	0.0010875	514.7723536128551	43.406	1.1542	43.267	42.809	43.963	-0.13929					69	31	4	0	0	0	0.40179	1	4037	4037		65.803	2.4969	1	7243900	+		5580	33170	3387	3401	7218	7218					0.014658376365787262
CPPYIAMSSID	11	Unmodified	_CPPYIAMSSID_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.2598266601562	2	598.769942	1195.52533	-0.72335	-0.00043312	1.8906	0.001132	1.1672	0.00069889	598.7707480430093	64.946	0.87737	64.69	64.307	65.184	-0.25563					50	21	4	0	0	0	0.024768	1	7379	7379		47.657	0	1	1288200			5581	5484	3388	3402	7219	7219					-0.06461003954177613
CPQEWPLC	8	Unmodified	_CPQEWPLC_					0	0	0			REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2711181640625	2	488.206781	974.399009	0.8999	0.00043934	3.2493	0.0015863	4.1492	0.0020257	488.20806223793824	22.621	1.0595	22.419	22.097	23.156	-0.20199					45	22	3	0	0	0	0.027866	1	857	857		62.978	15.063	1	146810	+		5582	23166	3389	3403	7220	7220					-0.08921465668834117
CPQGSIPSSP	10	Unmodified	_CPQGSIPSSP_					0	0	0			REV__nc|ENSG00000141027|O75376-3|NCOR1	REV__nc|ENSG00000141027|O75376-3|NCOR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7254943847656	2	486.726392	971.438231	-0.13061	-6.3573E-05	-3.7931	-0.0018462	-3.9237	-0.0019098	486.72452216992014	100.34	0.57467	100.33	100.04	100.62	-0.0050812					31	15	4	0	0	0	0.64538	1	12751	12751		71.877	0	1	312780	+		5583	24060	3390	3404	7221	7221					-0.04863042113595384
CPRAKKSK	8	Unmodified	_CPRAKKSK_					0	0	0			REV__ENST00000264501.8_2_4:123187996-123192199:+|nuORF	REV__ENST00000264501.8_2_4:123187996-123192199:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.76422119140625	2	459.271104	916.527655	-0.016165	-7.424E-06	-3.6227	-0.0016638	-3.6388	-0.0016712	459.2693560320172	36.628	0.8124	36.666	36.267	37.08	0.038044					48	21	3	0	0	0	0.027866	1	2803	2803		17.365	3.2278	1	2093800	+		5584	29720	3391	3405	7222	7222					0.06605257356432048
CPRFLAKLNEP	11	Unmodified	_CPRFLAKLNEP_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17;REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.9024963378906	3	429.900786	1286.68053	0.17666	7.5944E-05	3.4127	0.0014671	3.5894	0.0015431	429.9021257633563	110.35	0.86909	110.34	110.08	110.95	-0.0094986					82	33	4	0	0	0	1.0521	1	13940	13940		16.53	0	1	940620	+		5585	19687;27972	3392	3406	7223	7223					0.04865407962415702
CPRHAAAV	8	Unmodified	_CPRHAAAV_					0	0	0			REV__ENST00000489799.1_1_1:1310117-1310389:-|nuORF	REV__ENST00000489799.1_1_1:1310117-1310389:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.7129821777344	2	412.713422	823.412291	0.36789	0.00015183	-1.0038	-0.00041429	-0.63593	-0.00026246	412.7129157271808	73.382	1.2229	73.111	72.354	73.577	-0.27126					74	30	4	0	0	0	1.0017	1	8900	8900		37.028	5.0736	1	4914300	+		5586	33684	3393	3407	7224	7224					-0.006478467745751004
CPRHAAAV	8	Unmodified	_CPRHAAAV_					0	0	0			REV__ENST00000489799.1_1_1:1310117-1310389:-|nuORF	REV__ENST00000489799.1_1_1:1310117-1310389:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.71337890625	2	412.713422	823.412291	0.28441	0.00011738	-0.86523	-0.00035709	-0.58082	-0.00023971	412.71296447434673	73.078	1.5698	73.088	71.988	73.558	0.0096512					84	39	4	0	0	0	1.0572	1	8844	8844		28.254	0	1	3549300	+		5587	33684	3393	3407	7225	7225					-0.006478467745751004
CPRIPEDNQ	9	Unmodified	_CPRIPEDNQ_					0	0	0			REV__ENST00000357681.9_1_1:203652278-203652389:+|nuORF	REV__ENST00000357681.9_1_1:203652278-203652389:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2476806640625	2	536.248023	1070.48149	-0.39405	-0.00021131	-1.2116	-0.00064974	-1.6057	-0.00086105	536.2468841803786	70.446	1.6823	70.189	69.726	71.408	-0.25713					74	42	4	0	0	0	0.94809	1	8222	8222		29.15	1.2673	1	3928700	+		5588	30837	3394	3408	7226	7226					-0.050928523363154454
CPRLEGIGV	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PRLEGIGV_	C(1)PRLEGIGV		C(77)PRLEGIGV		0	1	0			REV__ENST00000459908.5_1_13:113439469-113512287:+|nuORF	REV__ENST00000459908.5_1_13:113439469-113512287:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2081604003906	2	500.765852	999.51715	-1.0532	-0.00052739	-2.1083	-0.0010558	-3.1615	-0.0015832	500.7644320869314	43.199	0.59563	42.973	42.714	43.31	-0.22597					38	14	3	0	0	0	0.023007	1	3923	3923		76.774	23.423	1	1649700	+		5589	32833	3395	3409	7227	7227	433				0.017372299113617373
CPSCRPSLL	9	Unmodified	_CPSCRPSLL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2584533691406	2	488.241155	974.467757	-0.15655	-7.6436E-05	-1.5665	-0.00076484	-1.7231	-0.00084128	488.2400342632208	52.136	1.5392	51.989	51.371	52.91	-0.14735					106	41	4	0	0	0	0.024447	1	5450	5450		40.778	16.575	1	1955300			5590	18602	3396	3410	7228	7228					-0.020498013690939842
CPSEEVDHD	9	Unmodified	_CPSEEVDHD_					0	0	0			REV__nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3114624023438	2	515.692746	1029.37094	1.0177	0.0005248	-1.1644	-0.0006005	-0.14679	-7.5698E-05	515.6920477766115	19.991	1.6631	19.791	19.455	21.118	-0.2001					71	33	3	0	0	0	0.024457	1	495	495		37.159	0	1	155940	+		5591	25203	3397	3411	7229	7229					-0.14257117115198525
CPSGTHLYT	9	Unmodified	_CPSGTHLYT_					0	0	0			REV__ENST00000355387.6_1_1:45116487-45116814:+|nuORF	REV__ENST00000355387.6_1_1:45116487-45116814:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.2625732421875	2	489.72111	977.427666	0.0033433	1.6373E-06	0.60197	0.0002948	0.60532	0.00029644	489.7212885390586	102.95	0.41422	102.82	102.63	103.05	-0.12783					12	9	2	0	0	0	0.024535	1	12789	12789		18.324	4.5491	1	276490	+		5592	30775	3398	3412	7230	7230					-0.061950247680329085
CPSISAPGPL	10	Unmodified	_CPSISAPGPL_					0	0	0		ENST00000482023.5_1_1:249144411-249145095:-|nuORF;ENST00000533927.5_1_1:249144411-249149911:-|nuORF;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692	ENST00000482023.5_1_1:249144411-249145095:-|nuORF	ENST00000482023.5_1_1:249144411-249145095:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7909851074219	2	471.241678	940.468803	-0.1247	-5.8766E-05	-3.7875	-0.0017848	-3.9122	-0.0018436	471.2390999715079	47.861	0.37694	47.922	47.771	48.148	0.060932					15	10	2	0	0	0	0.03519	1	4763	4763		71.296	28.9	1	277090			5593	8121	3399	3413	7231	7231					-0.003812637285591336
CPSIWKLC	8	Unmodified	_CPSIWKLC_					0	0	0			REV__ENST00000574727.5_1_17:6799635-6799734:+|nuORF	REV__ENST00000574727.5_1_17:6799635-6799734:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.23480224609375	2	475.235341	948.45613	1.1983	0.00056949	-2.8995	-0.0013779	-1.7011	-0.00080844	475.23395340444677	105.09	0.65389	105.09	104.71	105.36	0					49	20	3	0	0	0	0.96719	1	13487	13487		42.474	3.6683	1	364730	+		5594	35450	3400	3414	7232	7232					-0.02015998392448637
CPSPLPLPRDA	11	Unmodified	_CPSPLPLPRDA_					0	0	0			REV__ENST00000330871.3_1_17:76354168-76354477:-|nuORF	REV__ENST00000330871.3_1_17:76354168-76354477:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.2931518554688	2	583.305341	1164.59613	-0.85041	-0.00049605	-2.7754	-0.0016189	-3.6258	-0.002115	583.3034597202368	63.631	1.0457	63.438	63.109	64.154	-0.19243					50	26	3	0	0	0	0.024762	1	7262	7262		54.776	0	1	1605600	+		5595	30467	3401	3415	7233	7233					0.02041457145651293
CPSVGQILSF	10	Unmodified	_CPSVGQILSF_					0	0	0		sp|P0C725|LF2_EBVB9ProteinLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF2PE=1SV=1	sp|P0C725|LF2_EBVB9ProteinLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF2PE=1SV=1	sp|P0C725|LF2_EBVB9ProteinLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF2PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7696533203125	2	525.76806	1049.52157	-0.2382	-0.00012524	3.7768	0.0019857	3.5386	0.0018605	525.7696377190431	34.178	1.1044	33.953	33.68	34.785	-0.22412					73	27	5	0	0	0	1.0393	1	2495	2495		40.778	3.6191	1	9560100			5596	37942	3402	3416	7234	7234					-0.001213056657661582
CPTLMGLLF	9	Unmodified	_CPTLMGLLF_					0	0	0			REV__ENST00000444117.5_1_11:47291425-47295429:+|nuORF	REV__ENST00000444117.5_1_11:47291425-47295429:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7588195800781	2	497.758649	993.502746	-0.24948	-0.00012418	0.60223	0.00029977	0.35276	0.00017559	497.7588510545914	60.384	1.5396	60.384	60.027	61.566	0					101	40	4	0	0	0	0.44472	1	6933	6933		62.978	5.1671	1	6684900	+		5597	30652	3403	3417	7235	7235					0.005734414388598452
CPTLMGLLF	9	Unmodified	_CPTLMGLLF_					0	0	0			REV__ENST00000444117.5_1_11:47291425-47295429:+|nuORF	REV__ENST00000444117.5_1_11:47291425-47295429:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7590637207031	2	497.758649	993.502746	-0.57196	-0.0002847	0.86589	0.000431	0.29392	0.0001463	497.75896069187917	60.601	1.3881	60.387	60	61.389	-0.2134					117	36	4	0	0	0	0.44472	1	6931	6931		62.978	10.679	1	5971000	+		5598	30652	3403	3417	7236	7236					0.005734414388598452
CPTQVCLCCPV	11	Unmodified	_CPTQVCLCCPV_					0	0	0			REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.24853515625	2	583.247266	1164.47998	-0.49347	-0.00028782	3.3722	0.0019668	2.8787	0.001679	583.2490251597295	80.26	1.0732	80.054	79.714	80.787	-0.20633					61	25	3	0	0	0	0.87847	1	9605	9605		52.937	3.4952	1	2116200	+		5599	32467	3404	3418	7237	7237					-0.09568269012606834
CPTVQLEDI	9	Unmodified	_CPTVQLEDI_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.82818603515625	2	509.2497	1016.48485	0.05869	2.9888E-05	-3.642	-0.0018547	-3.5833	-0.0018248	509.2477454879516	71.759	0.31631	71.497	71.322	71.638	-0.26199					9	7	2	0	0	0	0.024397	1	8385	8385		39.253	3.6345	1	56469			5600	9648	3405	3419	7238	7238					-0.02273602282309639
CPVGLPRVSM	10	Unmodified	_CPVGLPRVSM_					0	0	0		ENST00000521659.5_2_17:4856104-4856152:+|nuORF	ENST00000521659.5_2_17:4856104-4856152:+|nuORF	ENST00000521659.5_2_17:4856104-4856152:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7902221679688	2	529.777905	1057.54126	0.016612	8.8008E-06	1.1181	0.00059236	1.1347	0.00060116	529.7783410475203	104.48	0.81349	104.35	104.1	104.91	-0.12561					44	22	3	0	0	0	0.03519	1	13038	13038		47.657	30.292	1	324290			5601	16008	3406	3420	7239	7239					0.014787470733608643
CPVPEGNPLTL	11	Unmodified	_CPVPEGNPLTL_					0	0	0			REV__ENST00000492534.1_1_1:205740542-205740761:-|nuORF	REV__ENST00000492534.1_1_1:205740542-205740761:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3115234375	2	570.291899	1138.56925	-1.0464	-0.00059673	-1.647	-0.00093926	-2.6933	-0.001536	570.2907678189905	52.425	0.60144	52.156	51.831	52.432	-0.26903					24	15	2	0	0	0	0.02475	1	5427	5427		35.152	0	1	277590	+		5602	22337	3407	3421	7240	7240					0.0055034853444340115
CPVPGPDLEI	10	Unmodified	_CPVPGPDLEI_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.29248046875	2	520.260068	1038.50558	-0.15928	-8.2869E-05	3.592	0.0018688	3.4327	0.0017859	520.2615156808956	73.333	0.8318	73.062	72.516	73.348	-0.27126					39	20	3	0	0	0	0.03519	1	8906	8906		53.351	0	1	374100			5603	8875	3408	3422	7241	7241					-0.012130119026551256
CPVSARLFA	9	Unmodified	_CPVSARLFA_					0	0	0		nc|ENSG00000129990|O00445-2|SYT5	nc|ENSG00000129990|O00445-2|SYT5	nc|ENSG00000129990|O00445-2|SYT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2849426269531	2	482.257662	962.500772	1.1374	0.00054854	1.3787	0.00066488	2.5161	0.0012134	482.25827876104205	54.669	0.44299	54.463	54.279	54.722	-0.20613					14	11	2	0	0	0	0.024209	1	5783	5783		56.721	0	1	242640			5604	18263	3409	3423	7242	7242					0.018021487452415386
CPWDRPSRCCL	11	2 Carbamidomethyl (C)	_CPWDRPSRC(Carbamidomethyl (C))C(Carbamidomethyl (C))L_	CPWDRPSRC(1)C(1)L		C(-38)PWDRPSRC(38)C(40)L		0	2	0		ENST00000589116.1_1_18:57103142-57122307:-|nuORF	ENST00000589116.1_1_18:57103142-57122307:-|nuORF	ENST00000589116.1_1_18:57103142-57122307:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.8795166015625	3	483.877658	1448.61114	-0.87574	-0.00042375	4.1598	0.0020128	3.2841	0.0015891	483.87978664102775	43.739	1.2333	43.501	43.211	44.445	-0.23736					100	33	5	0	0	0	0.98082	1	4014	4014		41.08	10.941	3	7401700			5605	17300	3410	3424	7243	7243	226;227				-0.09521742320293924
CPWSMTSSLSP	11	Unmodified	_CPWSMTSSLSP_					0	0	0		ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	598.26025390625	2	598.259742	1194.50493	-0.87771	-0.0005251	1.7506	0.0010473	0.8729	0.00052222	598.2599790959405	64.822	1.0811	64.587	64.256	65.337	-0.2345					34	26	2	0	0	0	0.44817	1	7385	7385		79.713	18.741	1	2626300			5606	12062	3411	3425	7244	7244					-0.08454174613984833
CPWSMTSSLSP	11	Unmodified	_CPWSMTSSLSP_					0	0	0		ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	598.2611083984375	2	598.259742	1194.50493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.793	1	64.59	64.09	65.09	-0.20254								0	0	0	0.77556	1	7382	7382		67.494	1.0644	1				5607	12062	3411	3425	7245	7245					-0.08454174613984833
CPWSMTSSLSP	11	Unmodified	_CPWSMTSSLSP_					0	0	0		ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	598.2591552734375	2	598.259742	1194.50493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.939	1	64.737	64.237	65.237	-0.20254								0	0	0	0.74297	1	7404	7404		71.877	3.0906	1				5608	12062	3411	3425	7246	7246					-0.08454174613984833
CPWSMTSSLSP	11	Unmodified	_CPWSMTSSLSP_					0	0	0		ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	ENST00000310496.8_1_17:80008396-80008634:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.2607421875	2	598.259742	1194.50493	-0.75818	-0.00045359	1.714	0.0010254	0.95581	0.00057182	598.763227312816	64.917	1.0791	64.661	64.269	65.348	-0.25563					34	26	2	0	0	0	0.40931	2	7369	7369;7393		82.241	24.719	1	2389600			5609	12062	3411	3425	7247;7248	7247					-0.08454174613984833
CQAAHRMAD	9	Unmodified	_CQAAHRMAD_					0	0	0			REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.80596923828125	2	501.715836	1001.41712	-0.11707	-5.8735E-05	2.8683	0.0014391	2.7512	0.0013803	501.7170843287966	59.6	0.70435	59.686	59.351	60.056	0.085682					31	18	2	0	0	0	0.024209	1	6748	6748		39.253	5.7372	1	315700	+		5610	31589	3412	3426	7249	7249					-0.08353330694114902
CQAAHRMAD	9	Unmodified	_CQAAHRMAD_					0	0	0			REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.8066101074219	2	501.715836	1001.41712	0.81452	0.00040866	1.7825	0.00089431	2.597	0.001303	501.71661119752775	60.066	0.60837	59.868	59.613	60.221	-0.19742					18	15	2	0	0	0	0.024344	1	6663	6663		45.972	5.3996	1	129640	+		5611	31589	3412	3426	7250	7250					-0.08353330694114902
CQAAHRMAD	9	Unmodified	_CQAAHRMAD_					0	0	0			REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.715836	1001.41712	0.097461	4.8898E-05	2.6429	0.001326	2.7404	0.0013749	501.71701238859936	59.958	0.48192	59.782	59.516	59.998	-0.1761	-0.0034566	0.00011186	NaN	24.519	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168910	+		5612	31589	3412	3426							-0.08353330694114902
CQAAHRMAD	9	Unmodified	_CQAAHRMAD_					0	0	0			REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.715836	1001.41712	-0.53399	-0.00026791	3.0472	0.0015288	2.5132	0.0012609	501.7171203948677	60.103	0.44894	59.855	59.648	60.097	-0.24842	0.068947	0.00051751	NaN	24.519	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153010	+		5613	31589	3412	3426							-0.08353330694114902
CQEFVSFKI	9	Unmodified	_CQEFVSFKI_					0	0	0			REV__ENSG00000181240|ENST00000321510|SLC25A41	REV__ENSG00000181240|ENST00000321510|SLC25A41	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.773681640625	2	550.775885	1099.53722	-0.83523	-0.00046003	-3.3895	-0.0018669	-4.2248	-0.0023269	550.7740767324063	54.866	0.97399	54.964	54.66	55.634	0.098015					82	26	4	0	0	0	0.2101	1	6006	6006		87.696	4.946	1	22168000	+		5614	27393	3413	3427	7251	7251					-0.008570191487024204
CQEQIVAQQEQ	11	Unmodified	_CQEQIVAQQEQ_					0	0	0		ENST00000545556.6_1_12:123699379-123710843:-|nuORF;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	ENST00000545556.6_1_12:123699379-123710843:-|nuORF	ENST00000545556.6_1_12:123699379-123710843:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2490539550781	3	435.203081	1302.58741	0.41778	0.00018182	-3.9249	-0.0017081	-3.5071	-0.0015263	435.20153599924885	28.713	0.41119	28.794	28.533	28.945	0.080811					12	9	2	0	0	0	0.024745	1	1663	1663		29.245	12.078	1	57275			5615	1150	3414	3428	7252	7252					-0.05177561281493581
CQEQIVAQQEQ	11	Unmodified	_CQEQIVAQQEQ_					0	0	0		ENST00000545556.6_1_12:123699379-123710843:-|nuORF;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	ENST00000545556.6_1_12:123699379-123710843:-|nuORF	ENST00000545556.6_1_12:123699379-123710843:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	435.203081	1302.58741	-0.88174	-0.00038373	-2.4363	-0.0010603	-3.3181	-0.001444	435.2017896496226	29.457	0.47459	29.212	28.924	29.399	-0.24524	0.25245	0.00098653	NaN	29.245	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96799			5616	1150	3414	3428							-0.05177561281493581
CQEQIVAQQEQ	11	Unmodified	_CQEQIVAQQEQ_					0	0	0		ENST00000545556.6_1_12:123699379-123710843:-|nuORF;nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	ENST00000545556.6_1_12:123699379-123710843:-|nuORF	ENST00000545556.6_1_12:123699379-123710843:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	435.203081	1302.58741	-0.36855	-0.0001604	-3.7904	-0.0016496	-4.1589	-0.00181	435.20136949603057	28.917	0.47347	28.748	28.424	28.897	-0.16897	-0.21191	-0.00078132	NaN	29.245	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56256			5617	1150	3414	3428							-0.05177561281493581
CQGGHQCPQS	10	Unmodified	_CQGGHQCPQS_					0	0	0			REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.3238525390625	2	522.702925	1043.3913	-0.28163	-0.00014721	-4.3821	-0.0022905	-4.6637	-0.0024377	522.7006807050657	45.29	0.3791	45.079	44.871	45.25	-0.21109					14	10	2	0	0	0	0.03519	1	4272	4272		18.262	0	1	62207	+		5618	20519	3415	3429	7253	7253					-0.12866224936396975
CQGPRRGMEV	10	Unmodified	_CQGPRRGMEV_					0	0	0			REV__ENST00000561281.4_1_14:24760714-24760984:-|nuORF	REV__ENST00000561281.4_1_14:24760714-24760984:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.7687377929688	2	566.771142	1131.52773	-1.0085	-0.00057157	-2.6624	-0.001509	-3.6709	-0.0020805	566.7695242278413	84.06	0.68655	84.06	83.735	84.422	0					45	15	4	0	0	0	0.88896	1	10512	10512		54.776	1.4249	1	870450	+		5619	35170	3416	3430	7254	7254					-0.03277110705880659
CQKLDPIRA	9	Unmodified	_CQKLDPIRA_					0	0	0			REV__ENST00000322177.5_1_15:75249251-75249560:-|nuORF	REV__ENST00000322177.5_1_15:75249251-75249560:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.81103515625	2	522.286951	1042.55935	0.086914	4.5394E-05	4.2355	0.0022121	4.3224	0.0022575	522.7896906067814	89.44	0.5021	89.456	89.092	89.594	0.015907					20	11	2	0	0	0	0.024313	1	11204	11204		60.118	0	1	59876	+		5620	30357	3417	3431	7255	7255					0.039772053197111745
CQKLEPLRQS	10	Unmodified	_CQKLEPLRQS_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.8995056152344	3	401.216774	1200.62849	0.45465	0.00018241	0.51274	0.00020572	0.96739	0.00038813	401.21690515425513	54.818	0.79108	54.667	54.375	55.166	-0.15036					53	22	4	0	0	0	0.03519	1	6015	6015		20.837	15.138	1	788130			5621	5248	3418	3432	7256	7256					0.03620244548642404
CQLALKSTCE	10	Unmodified	_CQLALKSTCE_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;NAV3|p.P444Lfs*48|1|0.35|ENSG00000067798|chr12:78006868-78006868|C/-|frameshift_variant	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.2637329101562	2	548.262284	1094.51002	1.3681	0.00075007	1.2721	0.00069743	2.6402	0.0014475	548.2628167937343	16.483	0.15118	16.33	16.222	16.373	-0.15376					7	5	2	0	0	0	1.1197	1	73	73		20.947	0.95016	1	15762			5622	1369	3419	3433	7257	7257					-0.033458707513773334
CQLLVGKRSL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))QLLVGKRSL_	C(1)QLLVGKRSL		C(59)QLLVGKRSL		0	1	0		ENSG00000159961|ENST00000641141|OR3A3;nc|ENSG00000159961|P47888|OR3A3	ENSG00000159961|ENST00000641141|OR3A3	ENSG00000159961|ENST00000641141|OR3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.3425903320312	2	587.342258	1172.66996	-0.44869	-0.00026354	0.55048	0.00032332	0.10178	5.9782E-05	587.3424594889474	88.841	1.004	88.703	88.398	89.402	-0.13757					56	23	3	0	0	0	0.82838	1	10826	10826		58.782	11.125	1	703920			5623	6776	3420	3434	7258	7258	83				0.09053425307956786
CQPGCYCPK	9	Unmodified	_CQPGCYCPK_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3046569824219	2	499.698266	997.381979	-1.3798	-0.00068949	1.5038	0.00075144	0.12398	6.1953E-05	499.69891735923164	60.045	0.38081	60.124	60.011	60.392	0.078888					13	9	2	0	0	0	0.024436	1	6795	6795		38.806	3.6054	1	73595			5624	18639	3421	3435	7259	7259					-0.11681709546280672
CQQLKLYIL	9	Unmodified	_CQQLKLYIL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.R2554Tfs*3|1|0.44|ENSG00000128731|chr15:28201512-28201513|-/T|frameshift_variant;HERC2|p.A2915Qfs*12|1|0.06|ENSG00000128731|chr15:28186659-28186659|C/-|frameshift_variant;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000528584.5_1_15:28900509-28916776:+|nuORF;ENST00000530420.5_1_15:28900570-28916776:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.7784423828125	2	561.323002	1120.63145	-1.0454	-0.00058683	-3.1058	-0.0017433	-4.1512	-0.0023302	561.3209112629875	84.462	1.0175	84.39	83.657	84.674	-0.072769					31	23	2	0	0	0	0.024323	1	10465	10465		53.351	2.016	1	152010			5625	4311;16211	3422	3436	7260	7260					0.07596119673439716
CQQLPVLIS	9	Unmodified	_CQQLPVLIS_					0	0	0			REV__ENSG00000177706|ENST00000313766|FAM20C	REV__ENSG00000177706|ENST00000313766|FAM20C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7784729003906	2	500.778428	999.542302	-0.049029	-2.4553E-05	-0.062093	-3.1095E-05	-0.11112	-5.5647E-05	500.778263571743	63.991	1.8112	63.739	63.372	65.183	-0.25141					139	48	5	0	0	0	0.29158	1	7508	7508		76.774	7.9873	1	10150000	+		5626	27141	3423	3437	7261	7261					0.042512847139278165
CQRGAGPGP	9	Unmodified	_CQRGAGPGP_					0	0	0			REV__ENST00000398882.7_2_8:144648785-144649337:-|nuORF	REV__ENST00000398882.7_2_8:144648785-144649337:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.72802734375	2	421.700512	841.38647	-0.76115	-0.00032098	2.5423	0.0010721	1.7812	0.00075113	421.70221333666564	25.277	0.18883	25.277	25.135	25.324	0					7	4	2	0	0	0	0.024357	1	1161	1161		12.959	5.2689	1	24192	+		5627	31814	3424	3438	7262	7262					-0.040567410168364404
CQRLIEQSN	9	Unmodified	_CQRLIEQSN_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2757568359375	2	545.769123	1089.52369	0.59854	0.00032666	-0.6464	-0.00035279	-0.047862	-2.6121E-05	545.7691571820677	77.344	0.65474	77.102	76.75	77.405	-0.24232					26	16	3	0	0	0	0.024447	1	9240	9240		25.574	0	1	1098200			5628	10802	3425	3439	7263	7263					-0.017488769279452754
CQSCPTGEQY	10	Unmodified	_CQSCPTGEQY_					0	0	0			REV__ENSG00000164530|ENST00000373674|PI16	REV__ENSG00000164530|ENST00000373674|PI16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2100830078125	2	558.210249	1114.40594	-0.1668	-9.3109E-05	-0.73764	-0.00041176	-0.90444	-0.00050487	558.2100081583336	35.145	1.0523	34.929	34.589	35.641	-0.21555					78	26	5	0	0	0	1.0271	1	2670	2670		42.396	0	1	11405000	+		5629	25767	3426	3440	7264	7264					-0.14668197578885156
CQSCPTGEQY	10	Carbamidomethyl (C)	_CQSC(Carbamidomethyl (C))PTGEQY_	CQSC(1)PTGEQY		C(-37)QSC(37)PTGEQY		0	1	0			REV__ENSG00000164530|ENST00000373674|PI16	REV__ENSG00000164530|ENST00000373674|PI16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.7212524414062	2	586.720981	1171.42741	-0.9359	-0.00054911	0.62634	0.00036749	-0.30956	-0.00018162	586.7213605742294	33.258	0.74594	33.058	32.771	33.517	-0.20019					47	18	4	0	0	0	0.85955	1	2364	2364		56.721	18.91	2	2822500	+		5630	25767	3426	3441	7265	7265	343				-0.15144812550170172
CQSCPTGEQY	10	Carbamidomethyl (C)	_CQSC(Carbamidomethyl (C))PTGEQY_	C(0.001)QSC(0.999)PTGEQY		C(-32)QSC(32)PTGEQY		0	1	0			REV__ENSG00000164530|ENST00000373674|PI16	REV__ENSG00000164530|ENST00000373674|PI16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.7211303710938	2	586.720981	1171.42741	-1.2659	-0.00074272	1.0131	0.00059442	-0.25277	-0.0001483	586.721511999561	33.117	0.838	32.951	32.679	33.517	-0.16565					40	20	2	0	0	0	0.98754	1	2320	2320		47.657	6.8792	2	2449200	+		5631	25767	3426	3441	7266	7266	343				-0.15144812550170172
CQSCPTGEQY	10	Carbamidomethyl (C)	_CQSC(Carbamidomethyl (C))PTGEQY_					0	1	0			REV__ENSG00000164530|ENST00000373674|PI16	REV__ENSG00000164530|ENST00000373674|PI16	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	586.720981	1171.42741	-0.55115	-0.00032337	0.54691	0.00032088	-0.0042392	-2.4873E-06	586.7211581774554	33.221	0.84306	32.99	32.711	33.554	-0.23107	-0.0098919	-0.000349	NaN	56.721	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2302500	+		5632	25767	3426	3441			343				-0.15144812550170172
CQSCPTGEQY	10	Carbamidomethyl (C)	_CQSC(Carbamidomethyl (C))PTGEQY_					0	1	0			REV__ENSG00000164530|ENST00000373674|PI16	REV__ENSG00000164530|ENST00000373674|PI16	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	586.720981	1171.42741	-1.2659	-0.00074272	1.0131	0.00059442	-0.25277	-0.0001483	586.721511999561	33.117	0.838	32.951	32.679	33.517	-0.16565	-0.048218	0.00019807	NaN	56.721	40	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2449200	+		5633	25767	3426	3441			343				-0.15144812550170172
CQVIKPLVV	9	Unmodified	_CQVIKPLVV_					0	0	0		ENST00000400113.7_1_13:19752483-19753624:-|nuORF	ENST00000400113.7_1_13:19752483-19753624:-|nuORF	ENST00000400113.7_1_13:19752483-19753624:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3249206542969	2	499.806988	997.599423	1.6393	0.00081933	-0.95857	-0.0004791	0.68071	0.00034022	500.30735488690436	63.507	0.64524	63.562	63.302	63.947	0.054104					43	17	3	0	0	0	0.024263	1	7363	7363		42.396	13.247	1	1352900			5634	13657	3427	3442	7267	7267					0.10052751990292563
CRAAAPRRLRL	11	Unmodified	_CRAAAPRRLRL_					0	0	0			REV__ENST00000367603.7_2_6:143158130-143266337:-|nuORF	REV__ENST00000367603.7_2_6:143158130-143266337:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.883056640625	2	641.88549	1281.75643	-0.57436	-0.00036868	-4.3198	-0.0027728	-4.8941	-0.0031415	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0685	1	11678	11678		19.997	0.89325	1	1351900	+		5635	31027	3428	3443	7268	7268					0.1268184965317687
CRAPDCSIQSP	11	Unmodified	_CRAPDCSIQSP_					0	0	0		ENST00000369612.1_1_10:111987637-111988024:+|nuORF;ENST00000442296.5_1_10:111987534-111988024:+|nuORF;ENST00000239007.11_2_10:111986011-111988024:+|nuORF;ENST00000332674.9_2_10:111967693-111988024:+|nuORF	ENST00000369612.1_1_10:111987637-111988024:+|nuORF	ENST00000369612.1_1_10:111987637-111988024:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.2394409179688	2	588.76044	1175.50633	-1.3953	-0.00082152	2.3694	0.001395	0.97403	0.00057347	588.7614200954348	53.724	0.51798	53.587	53.319	53.837	-0.13616					25	15	2	0	0	0	0.012566	1	5627	5627		104.42	19.263	1	535760			5636	11271	3429	3444	7269	7269					-0.07440540525249162
CRCQGTIV	8	Unmodified	_CRCQGTIV_					0	0	0		ENST00000246151.8_1_1:24113989-24114076:+|nuORF	ENST00000246151.8_1_1:24113989-24114076:+|nuORF	ENST00000246151.8_1_1:24113989-24114076:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.2109680175781	2	440.212398	878.410242	-0.21308	-9.3801E-05	-3.5394	-0.0015581	-3.7525	-0.0016519	440.21073593393226	26.763	0.98845	26.599	26.271	27.259	-0.16331					72	23	5	0	0	0	0.91239	1	1390	1390		50.025	0.81375	1	2005600			5637	11319	3430	3445	7270	7270					-0.0338264357466187
CRDQLDKYQ	9	Unmodified	_CRDQLDKYQ_					0	0	0		ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.2953491210938	2	584.774405	1167.53426	-0.89563	-0.00052374	1.5211	0.00088952	0.6255	0.00036578	584.7753476235093	56.042	0.5371	55.885	55.678	56.215	-0.15655					34	13	3	0	0	0	0.023274	1	6092	6092		87.696	40.039	1	398350			5638	10904	3431	3446	7271	7271					-0.042808942735291566
CRDQLDKYQ	9	Unmodified	_CRDQLDKYQ_					0	0	0		ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	584.774405	1167.53426	-1.5606	-0.00091263	2.225	0.0013011	0.66432	0.00038848	584.7756877813199	56.109	0.55684	55.893	55.602	56.158	-0.21551	0.004125	0.00047252	NaN	87.696	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344870			5639	10904	3431	3446							-0.042808942735291566
CREPKISDL	9	Unmodified	_CREPKISDL_					0	0	0		nc|ENSG00000149090|Q6UXH9-3|PAMR1;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	nc|ENSG00000149090|Q6UXH9-3|PAMR1	nc|ENSG00000149090|Q6UXH9-3|PAMR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7986450195312	2	530.776416	1059.53828	-0.064092	-3.4019E-05	0.79673	0.00042288	0.73263	0.00038886	530.7767109208215	95.73	0.93946	95.593	95.243	96.182	-0.13689					40	21	3	0	0	0	0.024261	1	11819	11819		54.776	0	1	352960			5640	6061	3432	3447	7272	7272					0.010891952201973254
CRFLFMIL	8	Unmodified	_CRFLFMIL_					0	0	0			REV__ENST00000490918.5_1_6:3138827-3138989:+|nuORF	REV__ENST00000490918.5_1_6:3138827-3138989:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3255615234375	2	521.782459	1041.55036	-0.45621	-0.00023804	-0.38119	-0.0001989	-0.8374	-0.00043694	521.78060161605	82.063	0.92263	82.089	81.779	82.701	0.025711					64	21	5	0	0	0	0.027866	1	10136	10136		28.254	0.37203	1	773270	+		5641	33714	3433	3448	7273	7273					0.03125140429710882
CRGSPLVVIS	10	Unmodified	_CRGSPLVVIS_					0	0	0		nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	nc|ENSG00000092964|Q16555-2|DPYSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7880859375	2	515.789327	1029.5641	-1.6894	-0.00087135	-4.3617	-0.0022497	-6.0511	-0.0031211	515.7883729107023	49.069	1.1054	49.144	48.807	49.912	0.074192					73	29	4	0	0	0	0.91678	1	4984	4984		52.937	5.2794	1	13431000			5642	2001	3434	3449	7274	7274					0.050500894624974535
CRILPVTV	8	Unmodified	_CRILPVTV_					0	0	0		ENST00000302014.10_1_5:140012836-140012944:-|nuORF	ENST00000302014.10_1_5:140012836-140012944:-|nuORF	ENST00000302014.10_1_5:140012836-140012944:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.28692626953125	2	450.770406	899.526258	-0.20134	-9.0758E-05	-0.76673	-0.00034562	-0.96808	-0.00043638	450.77090036968264	53.169	0.9892	53.265	52.529	53.518	0.095669					47	26	3	0	0	0	0.027866	1	5564	5564		47.916	0	1	281550			5643	11945	3435	3450	7275	7275					0.07247623267687686
CRILPVTV	8	Unmodified	_CRILPVTV_					0	0	0		ENST00000302014.10_1_5:140012836-140012944:-|nuORF	ENST00000302014.10_1_5:140012836-140012944:-|nuORF	ENST00000302014.10_1_5:140012836-140012944:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.770406	899.526258	0.096683	4.3582E-05	-3.0523	-0.0013759	-2.9556	-0.0013323	450.76995309733303	53.285	1.1679	53.285	52.595	53.763	0	0.069949	-0.0024944	NaN	47.916	50	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234460			5644	11945	3435	3450							0.07247623267687686
CRILPVTV	8	Unmodified	_CRILPVTV_					0	0	0		ENST00000302014.10_1_5:140012836-140012944:-|nuORF	ENST00000302014.10_1_5:140012836-140012944:-|nuORF	ENST00000302014.10_1_5:140012836-140012944:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	450.770406	899.526258	0.24743	0.00011153	0.62388	0.00028123	0.87131	0.00039276	450.77065470957297	53.355	0.80629	53.096	52.564	53.37	-0.25838	-0.11909	0.00081978	NaN	47.916	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161870			5645	11945	3435	3450							0.07247623267687686
CRKRNTGVSI	10	Unmodified	_CRKRNTGVSI_					0	0	0			REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7348022460938	2	567.314032	1132.61351	0.52062	0.00029535	-0.34686	-0.00019678	0.17376	9.8575E-05	567.3136216235519	59.255	1.2755	59.073	58.386	59.661	-0.18134					37	31	2	0	0	0	0.03519	1	6553	6553		23.523	0	1	138610	+		5646	20815	3436	3451	7276	7276					0.05250797471308033
CRLNRITP	8	Unmodified	_CRLNRITP_					0	0	0			REV__ENST00000265388.9_1_7:128595292-128595394:-|nuORF	REV__ENST00000265388.9_1_7:128595292-128595394:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7741394042969	2	486.774011	971.533469	-0.3261	-0.00015874	0.029828	1.452E-05	-0.29628	-0.00014422	486.77387494893907	27.429	0.89268	27.186	26.911	27.804	-0.24217					52	20	3	0	0	0	0.91239	1	1513	1513		50.025	2.1089	1	1129800	+		5647	29739	3437	3452	7277	7277					0.046563558680986716
CRLNRITP	8	Unmodified	_CRLNRITP_					0	0	0			REV__ENST00000265388.9_1_7:128595292-128595394:-|nuORF	REV__ENST00000265388.9_1_7:128595292-128595394:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7740783691406	2	486.774011	971.533469	-0.56873	-0.00027684	0.37817	0.00018408	-0.19056	-9.2759E-05	486.7740348135433	27.292	0.87795	27.124	26.851	27.729	-0.16816					49	20	3	0	0	0	0.845	1	1499	1499		55.504	2.1528	1	1281900	+		5648	29739	3437	3452	7278	7278					0.046563558680986716
CRLPFEEV	8	Unmodified	_CRLPFEEV_					0	0	0			REV__nc|ENSG00000185252|Q16587-4|ZNF74	REV__nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7793273925781	2	496.747127	991.479702	0.54652	0.00027148	1.3563	0.00067372	1.9028	0.0009452	496.74763099380317	51.505	0.55777	51.505	51.212	51.77	0					39	15	3	0	0	0	0.027866	1	5434	5434		37.159	4.3467	1	1594600	+		5649	33313	3438	3453	7279	7279					-0.016378613542769926
CRNVLLDPQ	9	Unmodified	_CRNVLLDPQ_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2764892578125	2	529.276583	1056.53861	-0.55326	-0.00029283	-0.49624	-0.00026265	-1.0495	-0.00055548	529.2761587018214	49.044	1.0656	49.044	48.516	49.582	0					61	29	3	0	0	0	0.32811	1	5055	5055		71.877	3.0313	1	6646100			5650	7082	3439	3454	7280	7280					0.012606149400653521
CRPGAVRADCW	11	Unmodified	_CRPGAVRADCW_					0	0	0		ENSG00000166897|ENST00000402918|ELFN2	ENSG00000166897|ENST00000402918|ELFN2	ENSG00000166897|ENST00000402918|ELFN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	616.3253784179688	2	617.284417	1232.55428	-0.97951	-0.00060464	0.54208	0.00033462	-0.43743	-0.00027002	617.2846286163905	57.803	0.39581	57.626	57.358	57.754	-0.17775					22	9	3	0	0	0	0.024797	1	6310	6310		63.534	12.341	1	553840			5651	7624	3440	3455	7281	7281					-0.05269421814546149
CRPHYCEGLGE	11	Unmodified	_CRPHYCEGLGE_					0	0	0			REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.84637451171875	3	421.846352	1262.51723	-0.095223	-4.0169E-05	-0.25896	-0.00010924	-0.35418	-0.00014941	421.8464834301196	33.233	2.4226	33.002	32.586	35.009	-0.23107					163	60	4	0	0	0	1.0408	1	2329	2329		27.644	3.1247	1	12688000	+		5652	26420	3441	3456	7282	7282					-0.1035313815095833
CRPKEKPEL	9	Unmodified	_CRPKEKPEL_					0	0	0			REV__ENST00000261254.7_1_12:4412013-4412226:+|nuORF	REV__ENST00000261254.7_1_12:4412013-4412226:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.2998046875	2	550.300059	1098.58556	-0.86049	-0.00047353	0.36483	0.00020077	-0.49566	-0.00027276	550.3002804003539	67.018	0.79379	66.737	66.481	67.274	-0.28148					52	20	5	0	0	0	0.091713	1	7956	7956		113.41	8.665	1	2372200	+		5653	29614	3442	3457	7283	7283					0.04021474491196386
CRQDESLIL	9	Unmodified	_CRQDESLIL_					0	0	0			REV__ENSG00000164010|ENST00000372517|ERMAP	REV__ENSG00000164010|ENST00000372517|ERMAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.2958374023438	2	538.773874	1075.53319	-0.2616	-0.00014094	-0.057611	-3.1039E-05	-0.31921	-0.00017198	539.2757285048905	87.261	0.87309	87.225	86.858	87.731	-0.035355					66	20	5	0	0	0	0.022832	1	10978	10978		93.195	0	1	594080	+		5654	25670	3443	3458	7284	7284					-0.001551086423887682
CRRALLLC	8	Unmodified	_CRRALLLC_					0	0	0		ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.78302001953125	2	474.267507	946.520461	-0.11537	-5.4715E-05	0.27793	0.00013181	0.16256	7.7098E-05	474.267564601448	17.645	0.34969	17.439	17.315	17.664	-0.20669					10	6	2	0	0	0	0.027866	1	186	186		13.775	0.81615	1	40031			5655	6359	3444	3459	7285	7285					0.04506201484355188
CRRLVLTVF	9	Unmodified	_CRRLVLTVF_					0	0	0			REV__ENST00000449005.5_1_1:783104-787332:+|nuORF	REV__ENST00000449005.5_1_1:783104-787332:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.831298828125	2	553.828786	1105.64302	0.070139	3.8845E-05	2.0009	0.0011081	2.071	0.001147	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	0.70186	1	10786	10786		45.952	7.1458	1	5986700	+		5656	32668	3445	3460	7286	7286					0.09442361487435846
CRTEVRRL	8	Unmodified	_CRTEVRRL_					0	0	0		ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3040771484375	2	516.790192	1031.56583	-0.7895	-0.000408	0.15886	8.2095E-05	-0.63064	-0.00032591	516.7902295181516	60.522	0.55935	60.346	60.076	60.635	-0.1761					26	13	3	0	0	0	0.027866	1	6726	6726		35.618	3.6634	1	194330			5657	5437	3446	3461	7287	7287					0.05131143271091787
CRTKSPQLL	9	Unmodified	_CRTKSPQLL_					0	0	0			REV__ENST00000432361.1_1:143382831-143465436:-|nuORF	REV__ENST00000432361.1_1:143382831-143465436:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2982177734375	2	523.294776	1044.575	-0.0068924	-3.6068E-06	1.6529	0.00086496	1.646	0.00086136	523.2944380769846	51.642	1.3975	51.523	51.082	52.48	-0.11875					88	36	4	0	0	0	0.19099	1	5372	5372		90.37	5.4543	1	6381100	+		5658	32381	3447	3462	7288	7288					0.05449491836770903
CRVINNHGL	9	Unmodified	_CRVINNHGL_					0	0	0			REV__ENSG00000101138|ENST00000217109|CSTF1	REV__ENSG00000101138|ENST00000217109|CSTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7764892578125	2	513.269093	1024.52363	-0.6762	-0.00034707	0.95799	0.0004917	0.28179	0.00014463	513.2693892593716	102.77	0.99358	102.77	102.3	103.3	0					37	23	3	0	0	0	0.024294	1	13126	13126		45.952	0	1	475420	+		5659	21187	3448	3463	7289	7289					0.012351678627283036
CRVSLWSII	9	Unmodified	_CRVSLWSII_					0	0	0		ENST00000380762.4_1_X:11136719-11139737:+|nuORF	ENST00000380762.4_1_X:11136719-11139737:+|nuORF	ENST00000380762.4_1_X:11136719-11139737:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2958984375	2	538.799694	1075.58484	0.19072	0.00010276	-0.94541	-0.00050939	-0.7547	-0.00040663	538.7988169351161	87.299	0.50494	87.163	86.926	87.431	-0.13613					27	11	3	0	0	0	0.022756	1	10650	10650		90.777	8.5361	1	505570			5660	13321	3449	3464	7290	7290					0.05006679842176709
CRWNETFQK	9	Unmodified	_CRWNETFQK_					0	0	0		ENST00000556548.5_1_14:24910766-24911042:-|nuORF	ENST00000556548.5_1_14:24910766-24911042:-|nuORF	ENST00000556548.5_1_14:24910766-24911042:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.2388000488281	3	404.525719	1210.55533	0.11962	4.8389E-05	-2.8187	-0.0011403	-2.6991	-0.0010919	404.52445410989145	26.823	0.714	26.81	26.456	27.17	-0.012983					40	17	3	0	0	0	0.024389	1	1424	1424		51.193	6.1705	1	308250			5661	16713	3450	3465	7291	7291					-0.04152884174004612
CRYDPGRDR	9	Unmodified	_CRYDPGRDR_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2659301757812	2	569.264539	1136.51452	1.542	0.0008778	3.7896	0.0021573	5.3315	0.0030351	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.74711	1	769	769		42.864	1.4377	1	2894000	+		5662	22248	3451	3466	7292	7292					-0.04827225493613696
CRYSQYIF	8	Unmodified	_CRYSQYIF_					0	0	0			REV__nc|ENSG00000144559|Q96BW9|TAMM41	REV__nc|ENSG00000144559|Q96BW9|TAMM41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.763427734375	2	540.252577	1078.4906	-0.94238	-0.00050912	-2.6699	-0.0014424	-3.6122	-0.0019515	540.250873063853	34.685	0.86771	34.685	34.332	35.2	0					47	22	3	0	0	0	0.027866	1	2559	2559		20.482	3.7769	1	1166700	+		5663	36748	3452	3467	7293	7293					-0.04550458979997529
CSCMCDED	8	Unmodified	_CSCMCDED_					0	0	0		ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2477111816406	2	453.110832	904.20711	0.67932	0.00030781	0.51483	0.00023327	1.1941	0.00054108	453.1115667550257	33.124	0.13955	33.18	33.105	33.245	0.056568					5	3	2	0	0	0	0.027866	1	2308	2308		8.2313	8.2313	1	33699			5664	8289	3453	3468	7294	7294					-0.24882497473629428
CSFLKILLV	9	Unmodified	_CSFLKILLV_					0	0	0			REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|44|3|anti-sense	REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|44|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7877807617188	2	518.317189	1034.61982	0.88443	0.00045841	-1.3947	-0.00072287	-0.51023	-0.00026446	518.3163255940847	85.3	2.3735	85.151	84.539	86.913	-0.14967					131	55	3	0	0	0	0.02435	1	10369	10369		42.396	0	1	308140	+		5665	36204	3454	3469	7295	7295					0.10389922650097105
CSGVFMDMTL	10	Unmodified	_CSGVFMDMTL_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.2534790039062	2	552.232138	1102.44972	-1.2752	-0.00070418	-1.071	-0.00059146	-2.3462	-0.0012956	552.2320278023498	46.051	0.41711	45.899	45.719	46.136	-0.15156					22	11	3	0	0	0	0.03519	1	4507	4507		19.997	0	1	316210	+		5666	22456	3455	3470	7296	7296					-0.09740304406136602
CSIFSYSLLL	10	Unmodified	_CSIFSYSLLL_					0	0	0		ENST00000401959.5_1_22:42070830-42070932:-|nuORF	ENST00000401959.5_1_22:42070830-42070932:-|nuORF	ENST00000401959.5_1_22:42070830-42070932:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.3260498046875	2	573.299193	1144.58383	-0.19033	-0.00010911	1.7393	0.00099712	1.5489	0.000888	573.8002768114593	73.295	0.61909	73.018	72.669	73.288	-0.2769					35	14	3	0	0	0	0.03519	1	8559	8559		49.442	0	1	434050			5667	13679	3456	3471	7297	7297					0.017324206825833244
CSLPLFPPQR	10	Unmodified	_CSLPLFPPQR_					0	0	0			REV__ENST00000372398.5_1_9:132995463-132995607:+|nuORF	REV__ENST00000372398.5_1_9:132995463-132995607:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7559204101562	2	579.310426	1156.6063	-0.019413	-1.1246E-05	1.8166	0.0010524	1.7972	0.0010411	579.311738955497	75.295	0.21019	75.023	74.934	75.144	-0.27266					6	4	2	0	0	0	0.03519	1	8881	8881		52.937	15.125	1	45050	+		5668	31203	3457	3472	7298	7298					0.03426064870859591
CSLRTGALMS	10	Unmodified	_CSLRTGALMS_					0	0	0			REV__ENST00000536012.5_2_10:70481007-70502158:+|nuORF	REV__ENST00000536012.5_2_10:70481007-70502158:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3146362304688	2	519.757169	1037.49979	-1.2258	-0.00063712	-1.7752	-0.00092268	-3.001	-0.0015598	519.7559164992823	36.138	0.80891	36.096	35.608	36.417	-0.042458					54	22	3	0	0	0	0.03519	1	2753	2753		65.465	26.659	1	512760	+		5669	34684	3458	3473	7299	7299					-0.017464336859802643
CSLRTLSRCSL	11	Unmodified	_CSLRTLSRCSL_					0	0	0		nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522	nc|ENSG00000162522|Q9P206|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.55047607421875	3	413.549647	1237.62711	-0.49749	-0.00020574	2.4285	0.0010043	1.9311	0.00079859	413.550692351935	29.631	1.5607	29.631	29.073	30.634	0					57	38	2	0	0	0	0.96926	1	1856	1856		43.651	2.5707	1	5348700			5670	18434	3459	3474	7300	7300					0.017802871882167892
CSMTESFSLVG	11	Unmodified	_CSMTESFSLVG_					0	0	0			REV__ENST00000307851.8_1_5:156514048-156514204:-|nuORF	REV__ENST00000307851.8_1_5:156514048-156514204:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.7499389648438	2	580.75175	1159.48895	-0.16858	-9.7904E-05	-2.173	-0.001262	-2.3416	-0.0013599	580.7505417106084	73.886	0.52723	73.609	73.288	73.816	-0.2769					30	14	3	0	0	0	1.0614	1	8692	8692		21.96	2.5999	1	1635900	+		5671	30147	3460	3475	7301	7301					-0.08441880850932648
CSPCSCYCC	9	Unmodified	_CSPCSCYCC_					0	0	0			REV__ENST00000279052.10_1_20:34130083-34130307:+|nuORF	REV__ENST00000279052.10_1_20:34130083-34130307:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7977600097656	2	484.625595	967.236636	0.15356	7.4419E-05	-1.4688	-0.00071182	-1.3152	-0.0006374	484.62412891818093	58.719	0.10938	58.81	58.745	58.855	0.091217					4	2	2	0	0	0	0.024541	1	6590	6590		1.2052	0	1	99372	+		5672	29870	3461	3476	7302	7302					-0.2482925672914007
CSPRRRAR	8	Unmodified	_CSPRRRAR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.82415771484375	2	501.280326	1000.5461	-0.43219	-0.00021665	0.067022	3.3597E-05	-0.36517	-0.00018305	501.7820084409157	33.523	0.20496	33.523	33.421	33.626	0					10	5	2	0	0	0	0.027866	1	2433	2433		58.782	35.739	1	103810			5673	12631	3462	3477	7303	7303					0.045848120510072476
CSPRRRAR	8	Unmodified	_CSPRRRAR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.280326	1000.5461	-0.70084	-0.00035132	-0.6146	-0.00030809	-1.3154	-0.0006594	501.27919791209587	33.377	0.30831	33.384	33.189	33.498	0.0066261	0.0029975	-0.00041962	NaN	40.778	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84951			5674	12631	3462	3477							0.045848120510072476
CSPRRRAR	8	Unmodified	_CSPRRRAR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.280326	1000.5461	0.59317	0.00029734	-2.6754	-0.0013411	-2.0823	-0.0010438	501.27894510411573	33.292	0.28559	33.348	33.176	33.461	0.056568	-0.032167	-0.0024857	NaN	40.778	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102160			5675	12631	3462	3477							0.045848120510072476
CSPRRRAR	8	Unmodified	_CSPRRRAR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.280326	1000.5461	-0.091637	-4.5936E-05	2.3264	0.0011662	2.2348	0.0011202	501.28217628614743	33.537	0.719	33.306	33.036	33.755	-0.23107	-0.074261	0.0025289	NaN	40.778	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92925			5676	12631	3462	3477							0.045848120510072476
CSPRRRAR	8	Unmodified	_CSPRRRAR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.280326	1000.5461	-1.3333	-0.00066838	0.89855	0.00045043	-0.43479	-0.00021795	501.28197978058665	33.508	0.9521	33.342	32.8	33.752	-0.16565	-0.038588	0.0010974	NaN	40.778	38	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242190			5677	12631	3462	3477							0.045848120510072476
CSPRTLVTL	9	Unmodified	_CSPRTLVTL_					0	0	0		MYO1G|p.R694C|1|0.21|ENSG00000136286|chr7:44966150-44966150|G/A|missense_variant	MYO1G|p.R694C|1|0.21|ENSG00000136286|chr7:44966150-44966150|G/A|missense_variant	MYO1G|p.R694C|1|0.21|ENSG00000136286|chr7:44966150-44966150|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2978820800781	2	495.276052	988.537551	-0.1265	-6.2653E-05	-3.4161	-0.0016919	-3.5426	-0.0017546	495.2742550128303	55.236	0.99225	55.086	54.641	55.634	-0.15036					72	27	4	0	0	0	0.023274	1	6022	6022		77.318	0	1	2190700			5678	18015	3463	3478	7304	7304					0.04282400571185008
CSQLHKAIGE	10	Unmodified	_CSQLHKAIGE_					0	0	0		COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.271728515625	2	543.274041	1084.53353	-0.38195	-0.0002075	-3.1	-0.0016841	-3.4819	-0.0018916	543.2722484787516	55.344	1.2652	55.113	54.565	55.83	-0.23087					101	35	5	0	0	0	0.26927	1	5939	5939		112.41	16.22	1	8912100			5679	475	3464	3479	7305	7305					-0.005356889225367922
CSQLHKAIGE	10	Unmodified	_CSQLHKAIGE_					0	0	0		COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	543.274041	1084.53353	-1.0557	-0.00057353	-2.3818	-0.001294	-3.4375	-0.0018675	543.2726175727101	55.279	0.99716	55.133	54.761	55.759	-0.14609	0.010296	0.00033525	NaN	112.41	77	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7339400			5680	475	3464	3479							-0.005356889225367922
CSQLHKAIGE	10	Unmodified	_CSQLHKAIGE_					0	0	0		COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	COLEC11|p.R119H|1|0.38|ENSG00000118004|chr2:3643471-3643471|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	543.274041	1084.53353	-0.8736	-0.0004746	-2.6258	-0.0014265	-3.4994	-0.0019011	543.2725117220277	55.328	1.2857	55.122	54.575	55.86	-0.20613	-0.00050581	7.0186E-05	NaN	112.41	108	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8733900			5681	475	3464	3479							-0.005356889225367922
CSSFKEQLSP	10	Unmodified	_CSSFKEQLSP_					0	0	0		nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2677612304688	2	563.265881	1124.51721	-0.24281	-0.00013676	3.6771	0.0020712	3.4343	0.0019344	563.2677150653773	23.556	1.4804	23.376	23.112	24.593	-0.17989					93	34	5	0	0	0	0.88896	1	930	930		54.776	1.8396	1	7326800			5682	10848	3465	3480	7306	7306					-0.04006814879312515
CSSLCEQFS	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))SSLC(Carbamidomethyl (C))EQFS_	C(1)SSLC(1)EQFS		C(100)SSLC(100)EQFS		0	2	0			REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF	REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.2178955078125	2	559.218074	1116.42159	-1.1635	-0.00065063	0.36514	0.00020419	-0.79832	-0.00044643	559.2181064747824	43.988	0.54947	43.769	43.49	44.04	-0.21939					38	14	3	0	0	0	0.13494	1	4057	4057		102.77	6.9582	1	2142300	+		5683	30552	3466	3481	7307	7307	397;398				-0.13195911061848165
CSSLCEQFS	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))SSLC(Carbamidomethyl (C))EQFS_					0	2	0			REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF	REV__ENST00000336798.11_2_1:31345156-31345357:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	559.218074	1116.42159	-1.1635	-0.00065063	0.36514	0.00020419	-0.79832	-0.00044643	559.2181064747824	43.988	0.54947	43.769	43.49	44.04	-0.21939	-0.0012732	4.5364E-05	NaN	102.77	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2142300	+		5684	30552	3466	3481			397;398				-0.13195911061848165
CSSYSQLIAGP	11	Unmodified	_CSSYSQLIAGP_					0	0	0			REV__ENSG00000153404|ENST00000637938|PLEKHG4B	REV__ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.2674560546875	2	563.265881	1124.51721	0.1725	9.7165E-05	2.619	0.0014752	2.7915	0.0015723	563.2674026963554	23.54	1.6335	23.338	23.014	24.648	-0.20193					85	37	5	0	0	0	0.93459	1	929	929		49.536	0	1	6659700	+		5685	24902	3467	3482	7308	7308					-0.04006814879312515
CSTALLWAAW	10	Unmodified	_CSTALLWAAW_					0	0	0			REV__ENST00000393389.7_1_11:82922362-82922422:+|nuORF	REV__ENST00000393389.7_1_11:82922362-82922422:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.3443603515625	2	561.276052	1120.53755	-0.96643	-0.00054244	-2.7874	-0.0015645	-3.7538	-0.0021069	561.7776061307748	60.894	0.63991	60.64	60.212	60.852	-0.25374					25	15	2	0	0	0	0.03519	1	6745	6745		44.117	8.4985	1	136030	+		5686	31643	3468	3483	7309	7309					-0.01789599428866495
CSTSSCFVIFD	11	Unmodified	_CSTSSCFVIFD_					0	0	0			REV__ENST00000527425.5_1_11:104776194-104777755:-|nuORF	REV__ENST00000527425.5_1_11:104776194-104777755:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.75244140625	2	604.75175	1207.48895	-0.88939	-0.00053786	-0.16327	-9.8736E-05	-1.0527	-0.0006366	604.7514295615566	62.815	1.7464	62.631	62.377	64.124	-0.18386					89	49	3	0	0	0	0.79111	1	7067	7067		58.23	8.2054	1	3487300	+		5687	34475	3469	3484	7310	7310					-0.10649880850928639
CSVLLSQVSCS	11	Unmodified	_CSVLLSQVSCS_					0	0	0		ENST00000305596.7_1_16:30363913-30364069:-|nuORF	ENST00000305596.7_1_16:30363913-30364069:-|nuORF	ENST00000305596.7_1_16:30363913-30364069:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2681884765625	2	563.267567	1124.52058	-0.24281	-0.00013676	0.68487	0.00038576	0.44206	0.000249	563.2677150653773	23.556	1.4804	23.376	23.112	24.593	-0.17989					93	34	5	0	0	0	0.97926	1	966	966		41.427	2.1738	1	7326800			5688	11990	3470	3485	7311	7311					-0.03669888096942486
CSVLLSQVSCS	11	Unmodified	_CSVLLSQVSCS_					0	0	0		ENST00000305596.7_1_16:30363913-30364069:-|nuORF	ENST00000305596.7_1_16:30363913-30364069:-|nuORF	ENST00000305596.7_1_16:30363913-30364069:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2681274414062	2	563.267567	1124.52058	1.6447	0.00092638	-1.2807	-0.00072137	0.36396	0.00020501	563.2665769908557	23.493	1.8958	23.302	23.034	24.93	-0.19117					109	43	5	0	0	0	0.97926	1	936	936		41.427	2.1738	1	7792100			5689	11990	3470	3485	7312	7312					-0.03669888096942486
CSVRLKQPKGE	11	Unmodified	_CSVRLKQPKGE_					0	0	0			REV__ENSG00000170270|ENST00000306954|GON7	REV__ENSG00000170270|ENST00000306954|GON7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.5628967285156	3	415.564173	1243.67069	-0.23885	-9.9257E-05	-2.0659	-0.00085851	-2.3047	-0.00095776	415.5631512450493	45.854	0.57028	45.593	45.284	45.854	-0.26118					45	15	4	0	0	0	0.94885	1	4380	4380		48.188	5.8499	1	2587000	+		5690	26452	3471	3486	7313	7313					0.05860219957025947
CTADAIRL	8	Unmodified	_CTADAIRL_					0	0	0			REV__ENST00000467418.1_1_6:170063677-170063815:-|nuORF	REV__ENST00000467418.1_1_6:170063677-170063815:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	431.7249755859375	2	431.726195	861.437837	-0.10468	-4.5195E-05	-3.0723	-0.0013264	-3.177	-0.0013716	431.7247298564157	36.319	0.82759	36.114	35.819	36.647	-0.20518					60	21	4	0	0	0	0.39824	1	2848	2848		97.473	12.113	1	3945500	+		5691	33073	3472	3487	7314	7314					0.0015758295718342197
CTADAIRL	8	Unmodified	_CTADAIRL_					0	0	0			REV__ENST00000467418.1_1_6:170063677-170063815:-|nuORF	REV__ENST00000467418.1_1_6:170063677-170063815:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	431.7246398925781	2	431.726195	861.437837	0.38484	0.00016614	-3.6222	-0.0015638	-3.2374	-0.0013977	431.72450220023586	36.247	0.97649	36.031	35.713	36.689	-0.21661					51	25	3	0	0	0	0.37125	1	2831	2831		101.21	0	1	3891700	+		5692	33073	3472	3487	7315	7315					0.0015758295718342197
CTAEQGQQL	9	Unmodified	_CTAEQGQQL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2193908691406	2	489.221474	976.428395	-0.03947	-1.931E-05	-3.5612	-0.0017422	-3.6007	-0.0017615	489.21958979938785	29.172	1.3549	29.022	28.657	30.012	-0.14952					65	31	4	0	0	0	0.42604	1	1745	1745		64.207	0.901	1	1151800	+		5693	20424	3473	3488	7316	7316					-0.06076230118958392
CTAEQGQQL	9	Unmodified	_CTAEQGQQL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.221474	976.428395	-1.1229	-0.00054935	-2.2875	-0.0011191	-3.4104	-0.0016684	489.2201714513884	29.514	1.0666	29.269	28.967	30.034	-0.24524	0.1123	0.0006773	NaN	64.207	60	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057800	+		5694	20424	3473	3488							-0.06076230118958392
CTAEQGQQL	9	Unmodified	_CTAEQGQQL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	489.221474	976.428395	-0.46875	-0.00022932	-3.0311	-0.0014829	-3.4998	-0.0017122	489.2198601611738	29.351	1.0638	29.178	28.808	29.872	-0.17258	0.021945	-5.0231E-05	NaN	64.207	57	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1188200	+		5695	20424	3473	3488							-0.06076230118958392
CTAEQGQQL	9	Unmodified	_CTAEQGQQL_					0	0	0			REV__nc|ENSG00000070404|O95633-2|FSTL3	REV__nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	489.221474	976.428395	-0.03947	-1.931E-05	-3.5612	-0.0017422	-3.6007	-0.0017615	489.21958979938785	29.172	1.3549	29.022	28.657	30.012	-0.14952	-0.13425	-0.00056897	NaN	64.207	65	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1151800	+		5696	20424	3473	3488							-0.06076230118958392
CTCEEVTYEL	10	Unmodified	_CTCEEVTYEL_					0	0	0			REV__nc|ENSG00000048462|Q02223-2|TNFRSF17	REV__nc|ENSG00000048462|Q02223-2|TNFRSF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.259521484375	2	595.241215	1188.46788	-0.5962	-0.00035488	1.0342	0.00061557	0.43796	0.00026069	595.2416542783889	76.458	0.25449	76.207	76.145	76.399	-0.25162					6	5	2	0	0	0	0.03519	1	9105	9105		96.19	22.216	1	34314	+		5697	20139	3474	3489	7317	7317					-0.11881890950417073
CTCIWPLV	8	Unmodified	_CTCIWPLV_					0	0	0			REV__ENST00000371335.4_1_X:119572500-119572653:-|nuORF	REV__ENST00000371335.4_1_X:119572500-119572653:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7311096191406	2	467.729892	933.445231	-0.54561	-0.0002552	3.4345	0.0016064	2.8889	0.0013512	467.73135740885226	60.38	1.4397	60.204	59.849	61.289	-0.1761					67	35	4	0	0	0	0.75307	1	6732	6732		62.978	8.0839	1	1639800	+		5698	31156	3475	3490	7318	7318					-0.024154007667220867
CTCLYIVQN	9	Unmodified	_CTCLYIVQN_					0	0	0		ENST00000438393.5_1_22:50167791-50167884:-|nuORF	ENST00000438393.5_1_22:50167791-50167884:-|nuORF	ENST00000438393.5_1_22:50167791-50167884:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7483520507812	2	528.74627	1055.47799	0.51812	0.00027396	3.3793	0.0017868	3.8974	0.0020607	528.7478249114087	84.976	3.36	84.838	83.845	87.205	-0.13752					151	78	4	0	0	0	0.62163	1	10250	10250		51.335	1.8939	1	1831100			5699	14310	3476	3491	7319	7319					-0.04753238434545892
CTCPDLQLY	9	Unmodified	_CTCPDLQLY_					0	0	0			REV__nc|ENSG00000174226|Q8N9S9-2|SNX31	REV__nc|ENSG00000174226|Q8N9S9-2|SNX31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2322387695312	2	528.230453	1054.44635	-0.23203	-0.00012256	1.6375	0.00086496	1.4054	0.0007424	528.2313853680256	67.601	0.17745	67.363	67.245	67.422	-0.23814					5	3	2	0	0	0	0.6504	1	7783	7783		49.442	1.5259	1	894710	+		5700	26843	3477	3492	7320	7320					-0.07869231188465164
CTEFLELIQ	9	Unmodified	_CTEFLELIQ_					0	0	0			REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2866821289062	2	548.273175	1094.5318	-0.65244	-0.00035771	-2.9757	-0.0016315	-3.6281	-0.0019892	548.7711995678713	77.069	0.32797	76.907	76.658	76.986	-0.16196					10	7	2	0	0	0	0.024457	1	9131	9131		29.15	18.284	1	135710	+		5701	25740	3478	3493	7321	7321					-0.011687427311699139
CTELLWVQL	9	Unmodified	_CTELLWVQL_					0	0	0			REV__ENST00000375735.6_1_11:103151140-103153779:+|nuORF	REV__ENST00000375735.6_1_11:103151140-103153779:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.3319091796875	2	552.791535	1103.56852	-0.071583	-3.9571E-05	-3.0484	-0.0016851	-3.12	-0.0017247	552.789822516062	95.57	0.69843	95.433	95.112	95.81	-0.13689					31	15	3	0	0	0	0.024319	1	11797	11797		47.657	1.2006	1	227180	+		5702	31332	3479	3494	7322	7322					0.020875538853943
CTELSLGQCQK	11	Unmodified	_CTELSLGQCQK_					0	0	0		ENST00000285402.3_1_8:103563909-103564047:+|nuORF	ENST00000285402.3_1_8:103563909-103564047:+|nuORF	ENST00000285402.3_1_8:103563909-103564047:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.2861938476562	2	605.283748	1208.55294	-0.68246	-0.00041308	4.057	0.0024556	3.3746	0.0020426	605.2860076128362	57.841	0.64501	57.607	57.095	57.74	-0.23363					54	16	4	0	0	0	0.79085	1	6316	6316		58.246	1.8125	1	4457700			5703	11750	3480	3495	7323	7323					-0.04299100693970104
CTEMRYISW	9	Oxidation (M)	_CTEM(Oxidation (M))RYISW_		CTEM(1)RYISW		CTEM(93)RYISW	0	0	1		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	602.760009765625	2	602.759909	1203.50526	-0.7808	-0.00047063	1.5226	0.00091775	0.74178	0.00044712	602.7605664478331	57.873	0.57355	57.695	57.358	57.932	-0.17775					39	14	4	0	0	0	0.17822	2	6341	6341;6354		93.195	16.421	1	5758500			5704	8096	3481	3496	7324;7325	7324		336			-0.08834754894155594
CTEMRYISW	9	Oxidation (M)	_CTEM(Oxidation (M))RYISW_		CTEM(1)RYISW		CTEM(99)RYISW	0	0	1		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	602.7597045898438	2	602.759909	1203.50526	-0.40458	-0.00024386	0.43788	0.00026394	0.0333	2.0072E-05	602.7601831310549	57.841	0.61786	57.651	57.295	57.913	-0.19017					45	15	4	0	0	0	0.15366	3	6353	6330;6340;6353		98.629	19.178	1	5761000			5705	8096	3481	3496	7326;7327;7328	7328		336			-0.08834754894155594
CTEMRYISW	9	Oxidation (M)	_CTEM(Oxidation (M))RYISW_		CTEM(1)RYISW		CTEM(99)RYISW	0	0	1		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	602.7587890625	2	602.759909	1203.50526	-0.39361	-0.00023725	1.1918	0.00071838	0.7982	0.00048112	602.7602976699451	57.933	0.62313	57.7	57.386	58.009	-0.23363					40	15	4	0	0	0	0.15366	1	6340	6340		98.629	26.752	1	4205800			5706	8096	3481	3496	7329	7329		336			-0.08834754894155594
CTEQLAQLK	9	Unmodified	_CTEQLAQLK_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2691040039062	2	517.270967	1032.52738	-1.0749	-0.00055602	-0.27265	-0.00014103	-1.3476	-0.00069705	517.2706814517236	28.443	1.0719	28.198	27.593	28.665	-0.24524					52	25	3	0	0	0	0.15366	1	1609	1609		98.629	19.178	1	2173900	+		5707	28207	3482	3497	7330	7330					0.01241792845917189
CTEQLAQLK	9	Unmodified	_CTEQLAQLK_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2681274414062	2	517.270967	1032.52738	-0.64387	-0.00033306	-2.6944	-0.0013937	-3.3383	-0.0017268	517.2691487917895	27.979	0.80962	27.811	27.528	28.338	-0.16816					49	19	4	0	0	0	0.2508	1	1587	1587		82.241	7.9855	1	1623500	+		5708	28207	3482	3497	7331	7331					0.01241792845917189
CTEQLAQLK	9	Unmodified	_CTEQLAQLK_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2677001953125	2	517.270967	1032.52738	-0.33559	-0.00017359	-2.0428	-0.0010567	-2.3784	-0.0012303	517.2699524708165	28.212	0.87427	28.06	27.61	28.484	-0.15195					69	21	4	0	0	0	0.077175	1	1577	1577		118.74	13.997	1	1847600	+		5709	28207	3482	3497	7332	7332					0.01241792845917189
CTERYQKL	8	Unmodified	_CTERYQKL_					0	0	0		ELMO1|p.G136C|1|0.24|ENSG00000155849|chr7:37259188-37259188|C/A|missense_variant	ELMO1|p.G136C|1|0.24|ENSG00000155849|chr7:37259188-37259188|C/A|missense_variant	ELMO1|p.G136C|1|0.24|ENSG00000155849|chr7:37259188-37259188|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.3167114257812	2	520.763309	1039.51206	-0.42973	-0.00022379	4.0018	0.002084	3.5721	0.0018602	520.7657937873387	65.943	1.212	65.701	65.126	66.338	-0.24145					49	29	2	0	0	0	0.027866	1	7570	7570		30.504	0.6621	1	372530			5710	700	3483	3498	7333	7333					-0.006110739512678265
CTFTQEKRNR	10	Unmodified	_CTFTQEKRNR_					0	0	0		ENST00000460688.1_1_9:72783617-72785588:+|nuORF;ENSG00000165072|ENST00000377182|MAMDC2	ENST00000460688.1_1_9:72783617-72785588:+|nuORF	ENST00000460688.1_1_9:72783617-72785588:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.21685791015625	3	428.215544	1281.6248	-0.42232	-0.00018084	2.6048	0.0011154	2.1825	0.00093457	428.2165544112592	29.782	1.6258	29.609	28.42	30.046	-0.17258					67	37	3	0	0	0	1.0177	1	1849	1849		43.651	2.2242	1	1126900			5711	7361	3484	3499	7334	7334					-0.004744252252294245
CTFVHLLP	8	Unmodified	_CTFVHLLP_					0	0	0		ENSG00000183747|ENST00000573854|ACSM2A;ENSG00000066813|ENST00000329697|ACSM2B	ENSG00000183747|ENST00000573854|ACSM2A	ENSG00000183747|ENST00000573854|ACSM2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.29248046875	2	465.249306	928.484059	0.88809	0.00041318	-3.4704	-0.0016146	-2.5823	-0.0012014	465.24801185575546	19.619	0.49737	19.419	19.106	19.603	-0.2001					14	9	3	0	0	0	0.027866	1	420	420		29.842	1.9593	1	18936			5712	1345	3485	3500	7335	7335					0.016956478592987878
CTGAVFLGAEI	11	Unmodified	_CTGAVFLGAEI_					0	0	0		nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2901000976562	2	540.773342	1079.53213	-1.4547	-0.00078667	0.15406	8.3314E-05	-1.3007	-0.00070336	540.7732406213067	53.404	0.21384	53.257	53.096	53.31	-0.14723					12	5	3	0	0	0	0.024736	1	5749	5749		44.377	16.296	1	409020			5713	3778	3486	3501	7336	7336					-0.004453230113085738
CTGAVFLGAEI	11	Unmodified	_CTGAVFLGAEI_					0	0	0		nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.773342	1079.53213	-0.94865	-0.000513	-0.048125	-2.6025E-05	-0.99677	-0.00053903	540.7737452513752	53.305	0.1147	53.116	53.019	53.133	-0.18982	-0.070777	-0.00010608	NaN	28.081	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48272			5714	3778	3486	3501							-0.004453230113085738
CTGGNKCPESL	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))TGGNKCPESL_	C(0.982)TGGNKC(0.018)PESL		C(17)TGGNKC(-17)PESL		0	1	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.24853515625	2	583.252448	1164.49034	-1.5701	-0.00091578	-4.2976	-0.0025066	-5.8677	-0.0034224	583.2496993777909	80.023	0.96262	80.023	79.744	80.707	0					55	22	4	0	0	0	0.40147	1	9928	9928		82.75	16.947	2	2062800	+		5715	23431	3487	3502	7337	7337	306				-0.08532246762138129
CTGHVCKN	8	Unmodified	_CTGHVCKN_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.69866943359375	2	431.188923	860.363292	0.31242	0.00013471	-1.0906	-0.00047026	-0.7782	-0.00033555	431.18891085990606	32.537	0.94729	32.6	32.2	33.147	0.062885					58	24	4	0	0	0	0.027866	1	2228	2228		45.952	5.1738	1	642260	+		5716	24384	3488	3503	7338	7338					-0.07247503125825006
CTGINNLLTT	10	Unmodified	_CTGINNLLTT_					0	0	0		nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42167-3|TMPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3025512695312	2	525.268424	1048.5223	0.24622	0.00012933	2.4839	0.0013047	2.7301	0.001434	525.2696894664551	63.431	1.9162	63.173	62.663	64.579	-0.25824					89	48	2	0	0	0	0.03519	1	7207	7207		24.232	5.9697	1	628310			5717	18219	3489	3504	7339	7339					-2.511016714379366E-05
CTGKTLLLAE	10	Unmodified	_CTGKTLLLAE_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2669067382812	2	524.788992	1047.56343	0.39431	0.00020693	-1.7139	-0.00089943	-1.3196	-0.0006925	524.7874371293991	83.873	0.63513	83.662	83.351	83.986	-0.21159					21	14	2	0	0	0	0.03519	1	10107	10107		28.081	0	1	109010			5718	8446	3490	3505	7340	7340					0.04155250022790824
CTHLQCFDAA	10	Unmodified	_CTHLQCFDAA_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3241577148438	2	554.731151	1107.44775	-0.67521	-0.00037456	-0.38551	-0.00021385	-1.0607	-0.00058841	554.7310467607192	51.299	0.88329	51.15	50.626	51.509	-0.14916					37	24	2	0	0	0	0.03519	1	5315	5315		23.523	0	1	219800			5719	1624	3491	3506	7341	7341					-0.10167597099712111
CTHVSMACPV	10	Unmodified	_CTHVSMACPV_					0	0	0			REV__ENST00000278426.7_2_11:57252034-57252334:-|nuORF	REV__ENST00000278426.7_2_11:57252034-57252334:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.27880859375	2	524.224648	1046.43474	-0.95204	-0.00049908	4.0652	0.0021311	3.1132	0.001632	524.2265646922698	55.367	2.348	55.221	54.424	56.772	-0.14609					141	62	3	0	0	0	0.03519	1	6169	6169		60.972	11.53	1	1377600	+		5720	29863	3492	3507	7342	7342					-0.08661751483464286
CTIQQLSQL	9	Unmodified	_CTIQQLSQL_					0	0	0			REV__ENST00000504701.5_1_5:130690355-130695031:+|nuORF	REV__ENST00000504701.5_1_5:130690355-130695031:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2713012695312	2	517.270967	1032.52738	-1.0749	-0.00055602	-0.27265	-0.00014103	-1.3476	-0.00069705	517.2706814517236	28.443	1.0719	28.198	27.593	28.665	-0.24524					52	25	3	0	0	0	0.43628	1	1673	1673		63.534	0.22758	1	2173900	+		5721	33989	3493	3508	7343	7343					0.012417928459399263
CTIVVGFLLI	10	Unmodified	_CTIVVGFLLI_					0	0	0			REV__ENSG00000233670|ENST00000580256|PIRT	REV__ENSG00000233670|ENST00000580256|PIRT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7925415039062	2	539.322471	1076.63039	0.13094	7.062E-05	-4.1622	-0.0022447	-4.0312	-0.0021741	539.3203870794791	77.948	0.70148	77.737	77.376	78.077	-0.21087					36	16	4	0	0	0	0.03519	1	9634	9634		38.806	20.482	1	269130	+		5722	28910	3494	3509	7344	7344					0.09513905304561376
CTIVVGFLLI	10	Unmodified	_CTIVVGFLLI_					0	0	0			REV__ENSG00000233670|ENST00000580256|PIRT	REV__ENSG00000233670|ENST00000580256|PIRT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7925415039062	2	539.322471	1076.63039	-1.0496	-0.00056607	-1.5913	-0.00085822	-2.6409	-0.0014243	539.320839050345	77.867	0.73907	77.883	77.536	78.275	0.015907					52	17	5	0	0	0	0.03519	1	9575	9575		21.96	2.5999	1	260910	+		5723	28910	3494	3509	7345	7345					0.09513905304561376
CTKAKKRR	8	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))C(Carbamidomethyl (C))TKAKKRR_	C(1)TKAKKRR		C(49)TKAKKRR		1	1	0		ENST00000433977.5_1_7:48015924-48015978:-|nuORF	ENST00000433977.5_1_7:48015924-48015978:-|nuORF	ENST00000433977.5_1_7:48015924-48015978:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	545.319117	1088.62368	-0.95668	-0.0005217	-3.3877	-0.0018474	-4.3444	-0.0023691	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.91956	1	10945	10945		49.442	7.0454	1	15621000			5724	14238	3495	3510	7346	7346	193				0.08291405196519008
CTKDKAYYRCY	11	Unmodified	_CTKDKAYYRCY_					0	0	0			REV__nc|ENSG00000152520|Q58A45-4|PAN3	REV__nc|ENSG00000152520|Q58A45-4|PAN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2979431152344	3	471.881174	1412.62169	-0.024102	-1.1373E-05	-2.2482	-0.0010609	-2.2723	-0.0010723	471.88019231293623	33.025	0.44232	32.794	32.711	33.153	-0.23107					13	10	2	0	0	0	0.024809	1	2317	2317		17.167	0	1	71370	+		5725	24849	3496	3511	7347	7347					-0.06811436394241355
CTKSPDYNCL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))TKSPDYNCL_	C(1)TKSPDYNCL		C(66)TKSPDYNC(-66)L		0	1	0			REV__ENSG00000122584|ENST00000405863|NXPH1	REV__ENSG00000122584|ENST00000405863|NXPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	600.7547607421875	2	600.754824	1199.49509	-0.63297	-0.00038026	0.29673	0.00017826	-0.33625	-0.000202	600.7550341006805	58.637	1.0224	58.728	58.409	59.432	0.091217					86	27	5	0	0	0	0.52765	1	6569	6569		85.161	12.282	2	5666100	+		5726	22654	3497	3512	7348	7348	297				-0.09667362619370579
CTLENHQLY	9	Unmodified	_CTLENHQLY_					0	0	0			REV__LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	REV__LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7994384765625	2	560.758223	1119.50189	-1.2589	-0.00070596	-1.6931	-0.00094941	-2.952	-0.0016554	560.7569786353592	55.761	0.77036	55.546	55.268	56.038	-0.21551					49	20	4	0	0	0	0.0242	1	5956	5956		69.628	3.1983	1	2829400	+		5727	20338	3498	3513	7349	7349					-0.05307681676504217
CTLIRHLGSVG	11	Unmodified	_CTLIRHLGSVG_					0	0	0		ENST00000372406.5_1_9:132898991-132899180:+|nuORF	ENST00000372406.5_1_9:132898991-132899180:+|nuORF	ENST00000372406.5_1_9:132898991-132899180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.3181762695312	2	578.318783	1154.62301	-0.16048	-9.281E-05	0.85174	0.00049258	0.69126	0.00039977	578.3191441993957	68.172	1.0855	67.938	67.471	68.557	-0.23376					67	26	3	0	0	0	0.48498	1	7866	7866		77.318	0.54344	1	2468800			5728	13039	3499	3514	7350	7350					0.05188565756816388
CTLIWLFI	8	Unmodified	_CTLIWLFI_					0	0	0			REV__ENST00000556551.2_1_14:74325599-74340738:+|nuORF	REV__ENST00000556551.2_1_14:74325599-74340738:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7846984863281	2	504.782982	1007.55141	0.7232	0.00036506	1.2668	0.00063948	1.99	0.0010045	504.78352141815054	98.194	1.3102	98.192	97.68	98.99	-0.0020828					63	30	3	0	0	0	0.85409	1	12438	12438		54.765	6.8491	1	1329300	+		5729	35039	3500	3515	7351	7351					0.04793678070245733
CTLKLVQPV	9	Unmodified	_CTLKLVQPV_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.31329345703125	2	500.79662	999.578688	-0.14755	-7.3892E-05	4.1091	0.0020578	3.9615	0.0019839	500.79869939080925	76.341	0.24456	76.073	76.008	76.253	-0.26806					7	5	2	0	0	0	0.024374	1	9067	9067		32.812	0	1	104150	+		5730	27003	3501	3516	7352	7352					0.07888161610628686
CTLLYVTL	8	Unmodified	_CTLLYVTL_					0	0	0		ENST00000525625.1_1_11:125884983-125893371:-|nuORF;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.755859375	2	463.256797	924.499041	0.1043	4.8319E-05	1.4188	0.00065725	1.5231	0.00070557	463.2573607879627	40.391	1.0646	40.391	39.843	40.908	0					71	29	5	0	0	0	0.027866	1	3580	3580		20.482	0	1	11531000			5731	1271	3502	3517	7353	7353					0.03377094936638514
CTLNGEWVLQ	10	Unmodified	_CTLNGEWVLQ_					0	0	0			REV__ENST00000520332.5_1_8:8869238-8946074:+|nuORF	REV__ENST00000520332.5_1_8:8869238-8946074:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.803466796875	2	581.781699	1161.54884	-0.79402	-0.00046195	-1.1448	-0.00066602	-1.9388	-0.001128	581.7808772126392	64.343	1.2456	64.151	63.342	64.588	-0.19243					42	31	2	0	0	0	0.03519	1	7232	7232		104.01	13.237	1	183270	+		5732	34290	3503	3518	7354	7354					-0.025468221253504453
CTLYYRLY	8	Unmodified	_CTLYYRLY_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.25439453125	2	547.770603	1093.52665	-0.70137	-0.00038419	1.3925	0.00076277	0.69113	0.00037858	547.7722481224505	66.404	0.7019	66.181	65.701	66.403	-0.22374					23	17	2	0	0	0	0.027866	1	7586	7586		25.45	0	1	440700			5733	9037	3504	3519	7355	7355					-0.01637001803101157
CTNKVGKKQ	9	Unmodified	_CTNKVGKKQ_					0	0	0			REV__nc|ENSG00000121903|P17040-4|ZSCAN20	REV__nc|ENSG00000121903|P17040-4|ZSCAN20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7796936035156	2	503.279126	1004.5437	0.37487	0.00018866	0.6507	0.00032748	1.0256	0.00051615	503.2790801540635	71.11	0.69005	70.897	70.607	71.297	-0.21333					31	15	3	0	0	0	0.50848	1	8299	8299		58.782	2.0609	1	1507100	+		5734	22616	3505	3520	7356	7356					0.04160918802688229
CTNLTGTLL	9	Unmodified	_CTNLTGTLL_					0	0	0		ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2447204589844	2	468.24696	934.479368	-0.29636	-0.00013877	-4.317	-0.0020214	-4.6134	-0.0021602	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	0.6504	1	13263	13263		49.442	6.9671	1	6721300			5735	4129	3506	3521	7357	7357					0.009507189259011284
CTPCHLTTSVT	11	Unmodified	_CTPCHLTTSVT_					0	0	0			REV__ENSG00000131126|ENST00000598265|TEX101	REV__ENSG00000131126|ENST00000598265|TEX101	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.7796630859375	2	581.765191	1161.51583	-0.97165	-0.00056527	-2.2484	-0.001308	-3.22	-0.0018733	581.7638822975206	45.43	0.61797	45.218	44.831	45.449	-0.21109					36	17	3	0	0	0	0.024732	1	4234	4234		19.104	3.4617	1	885750	+		5736	23190	3507	3522	7358	7358					-0.058467722397381294
CTPRQRLAGG	10	Unmodified	_CTPRQRLAGG_					0	0	0			REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF	REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.282470703125	2	529.779825	1057.5451	-1.1154	-0.0005909	-3.4709	-0.0018388	-4.5862	-0.0024297	529.7779031088157	39.304	1.1942	39.205	38.914	40.108	-0.098755					46	32	3	0	0	0	0.03519	1	3458	3458		82.241	25.519	1	870650	+		5737	26212	3508	3523	7359	7359					0.01862552891429914
CTPRQRLAGG	10	Unmodified	_CTPRQRLAGG_					0	0	0			REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF	REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.779825	1057.5451	-0.92181	-0.00048836	-3.6122	-0.0019137	-4.534	-0.002402	529.7777331346164	39.446	0.4999	39.47	39.206	39.706	0.023727	0.13235	-7.5742E-05	NaN	82.241	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897760	+		5738	26212	3508	3523							0.01862552891429914
CTPSPRLALT	10	Unmodified	_CTPSPRLALT_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7850952148438	2	529.786784	1057.55902	-0.16954	-8.982E-05	-3.3792	-0.0017902	-3.5487	-0.0018801	529.784879757125	72.41	0.80518	72.133	71.908	72.713	-0.2769					47	18	4	0	0	0	0.52765	1	8477	8477		85.161	0.2453	1	1655100			5739	1982	3509	3524	7360	7360					0.03253785599872572
CTPSQAPIEY	10	Unmodified	_CTPSQAPIEY_					0	0	0			REV__ENSG00000111432|ENST00000229030|FZD10	REV__ENSG00000111432|ENST00000229030|FZD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.3241577148438	2	554.752607	1107.49066	0.28585	0.00015858	3.6133	0.0020045	3.8991	0.002163	554.7545386694168	50.804	0.44419	50.624	50.426	50.87	-0.18071					26	11	3	0	0	0	0.03519	1	5179	5179		45.972	7.1661	1	576950	+		5740	21919	3510	3525	7361	7361					-0.05878503770645693
CTPVRPEQKQ	10	Unmodified	_CTPVRPEQKQ_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.3065795898438	2	593.305872	1184.59719	-0.55161	-0.00032728	0.77679	0.00046088	0.22518	0.0001336	593.3062538170636	63.376	1.3354	63.149	62.77	64.105	-0.2267					87	33	4	0	0	0	0.77808	1	7173	7173		62.107	1.9892	1	6457000	+		5741	28790	3511	3526	7362	7362					0.012276715145389971
CTRAFPRLY	9	Unmodified	_CTRAFPRLY_					0	0	0		ENST00000494569.5_1_3:147109809-147110196:-|nuORF	ENST00000494569.5_1_3:147109809-147110196:-|nuORF	ENST00000494569.5_1_3:147109809-147110196:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.3504638671875	2	563.794943	1125.57533	-0.52593	-0.00029652	-2.4698	-0.0013925	-2.9958	-0.001689	564.2946737137124	81.356	0.4566	81.213	80.984	81.441	-0.14249					21	10	3	0	0	0	0.024325	1	9736	9736		40.573	0	1	134980			5742	15531	3512	3527	7363	7363					0.017569115566402616
CTRLATLASI	10	Unmodified	_CTRLATLASI_					0	0	0			REV__ENSG00000180644|ENST00000441259|PRF1	REV__ENSG00000180644|ENST00000441259|PRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.266845703125	2	524.794609	1047.57467	0.75614	0.00039682	-4.0206	-0.00211	-3.2645	-0.0017132	524.7925251076438	50.983	0.48951	50.802	50.572	51.062	-0.18071					26	12	3	0	0	0	0.03519	1	5232	5232		32.751	1.2207	1	171430	+		5743	27353	3513	3528	7364	7364					0.05278072116925614
CTRRLVVQ	8	Unmodified	_CTRRLVVQ_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN|p.V1585L|1|0.24|ENSG00000154358|chr1:228264283-228264283|G/T|missense_variant;OBSCN-CASZ1|1|fusion	nc|ENSG00000154358|Q5VST9|OBSCN;OBSCN-CASZ1|1|fusion	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.80303955078125	2	487.781836	973.549119	0.29001	0.00014146	2.5897	0.0012632	2.8797	0.0014047	487.78290100353024	88.906	1.2238	88.906	87.962	89.186	0					39	28	2	0	0	0	0.027866	1	11172	11172		18.324	0	1	567900			5744	6406;18899	3514	3529	7365	7365					0.061286423851584004
CTSPRRLAN	9	Unmodified	_CTSPRRLAN_					0	0	0		SLIT2|p.A455D|1|0.08|ENSG00000145147|chr4:20524103-20524103|C/A|missense_variant;SLIT2|p.Y1312Lfs*5|1|0.2|ENSG00000145147|chr4:20616993-20616994|-/T|frameshift_variant;nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2	SLIT2|p.A455D|1|0.08|ENSG00000145147|chr4:20524103-20524103|C/A|missense_variant	SLIT2|p.A455D|1|0.08|ENSG00000145147|chr4:20524103-20524103|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.320068359375	2	509.26655	1016.51855	-0.4469	-0.00022759	2.6055	0.0013269	2.1586	0.0010993	509.2683799199031	69.162	0.34302	69.177	68.937	69.28	0.015121					12	8	2	0	0	0	0.024484	1	8245	8245		37.812	26.946	1	141540			5745	5793	3515	3530	7366	7366					0.010948640001060994
CTSPRRLAN	9	Unmodified	_CTSPRRLAN_					0	0	0		SLIT2|p.A455D|1|0.08|ENSG00000145147|chr4:20524103-20524103|C/A|missense_variant;SLIT2|p.Y1312Lfs*5|1|0.2|ENSG00000145147|chr4:20616993-20616994|-/T|frameshift_variant;nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2	SLIT2|p.A455D|1|0.08|ENSG00000145147|chr4:20524103-20524103|C/A|missense_variant	SLIT2|p.A455D|1|0.08|ENSG00000145147|chr4:20524103-20524103|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.26655	1016.51855	0.041433	2.11E-05	-2.1748	-0.0011076	-2.1334	-0.0010865	509.26775809295896	69.351	0.41032	69.1	68.866	69.276	-0.25063	-0.034733	-0.0026285	NaN	42.864	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38834			5746	5793	3515	3530							0.010948640001060994
CTSQEKIY	8	Unmodified	_CTSQEKIY_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.227294921875	2	486.228768	970.442982	-0.052088	-2.5327E-05	-3.2381	-0.0015744	-3.2902	-0.0015998	486.2269629513112	54.846	0.91553	54.615	54.181	55.096	-0.23087					73	25	4	0	0	0	0.42327	2	5850	5838;5850		94.006	3.2298	1	2593000	+		5747	20473	3516	3531	7367;7368	7368					-0.04342157970836524
CTSRLHIRTLV	11	Unmodified	_CTSRLHIRTLV_					0	0	0		ENST00000204566.6_1_15:65255449-65255662:-|nuORF	ENST00000204566.6_1_15:65255449-65255662:-|nuORF	ENST00000204566.6_1_15:65255449-65255662:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.583251953125	3	433.583568	1297.72887	0.087904	3.8114E-05	0.24256	0.00010517	0.33047	0.00014328	433.58365511863684	46.981	1.7186	46.885	46.539	48.258	-0.096649					127	46	4	0	0	0	0.91387	2	4604	4554;4604		50.791	3.5621	1	9916400			5748	11134	3517	3532	7369;7370	7370					0.09191901602298458
CTSSVRWAN	9	Unmodified	_CTSSVRWAN_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2353515625	2	512.237458	1022.46036	-0.68877	-0.00035282	-3.9379	-0.0020171	-4.6266	-0.0023699	512.2354030768644	57.536	0.65367	57.358	57.06	57.714	-0.17775					52	16	4	0	0	0	0.45795	1	6276	6276		62.107	3.3255	1	3214700	+		5749	25943	3518	3533	7371	7371					-0.04996817645167084
CTTKTSTSIV	10	Unmodified	_CTTKTSTSIV_					0	0	0		KLKB1|p.R390S|1|0.21|ENSG00000164344|chr4:186252040-186252040|C/A|missense_variant	KLKB1|p.R390S|1|0.21|ENSG00000164344|chr4:186252040-186252040|C/A|missense_variant	KLKB1|p.R390S|1|0.21|ENSG00000164344|chr4:186252040-186252040|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7665405273438	2	520.768257	1039.52196	-0.46416	-0.00024172	-3.5847	-0.0018668	-4.0489	-0.0021085	520.7664167659216	47.498	3.4956	47.402	46.86	50.355	-0.096649					231	93	6	0	0	0	0.83673	1	4736	4736		58.23	1.5089	1	69514000			5750	17807	3519	3534	7372	7372					0.0037806926343364466
CTVELVEAAE	10	Unmodified	_CTVELVEAAE_					0	0	0		ENSG00000198324|ENST00000683047|PHETA1;nc|ENSG00000198324|Q8N4B1-4|PHETA1	ENSG00000198324|ENST00000683047|PHETA1	ENSG00000198324|ENST00000683047|PHETA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.80810546875	2	532.25244	1062.49033	0.19104	0.00010168	1.4102	0.00075058	1.6012	0.00085225	532.2530704517621	67.28	1.0353	67.031	66.792	67.828	-0.24839					50	24	3	0	0	0	0.03519	1	7708	7708		32.812	0	1	1231500			5751	10121	3520	3535	7373	7373					-0.03841923490494992
CTVSEMALDSP	11	Unmodified	_CTVSEMALDSP_					0	0	0		ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;nc|ENSG00000204152|Q5SRD1-2|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2539672851562	2	576.749207	1151.48386	-0.66509	-0.00038359	-3.5217	-0.0020311	-4.1867	-0.0024147	576.7473351693121	46.909	1.1404	46.715	45.975	47.116	-0.19387					47	31	2	0	0	0	0.024778	1	4457	4457		52.937	9.2859	1	341540			5752	8812	3521	3536	7374	7374					-0.08582184713532115
CTVSEMALDSP	11	Unmodified	_CTVSEMALDSP_					0	0	0		ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;nc|ENSG00000204152|Q5SRD1-2|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.749207	1151.48386	-0.01776	-1.0243E-05	-3.9787	-0.0022947	-3.9965	-0.0023049	576.747119236658	46.857	1.2018	46.76	45.999	47.2	-0.096653	-0.012706	-0.00020398	NaN	52.937	46	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230660			5753	8812	3521	3536							-0.08582184713532115
CTVSEMALDSP	11	Unmodified	_CTVSEMALDSP_					0	0	0		ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;nc|ENSG00000204152|Q5SRD1-2|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.749207	1151.48386	-0.26327	-0.00015184	-3.9819	-0.0022966	-4.2452	-0.0024484	576.7470370617414	47.113	0.82282	46.844	46.415	47.238	-0.26939	0.070912	-0.00020769	NaN	52.937	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342990			5754	8812	3521	3536							-0.08582184713532115
CTWGPNSIQM	10	Unmodified	_CTWGPNSIQM_					0	0	0		ENSG00000143674|ENST00000366624|MAP3K21;nc|ENSG00000143674|Q5TCX8-3|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.74462890625	2	568.746802	1135.47905	-1.259	-0.00071606	-2.2372	-0.0012724	-3.4962	-0.0019885	568.7453732007142	24.896	1.4798	24.896	24.563	26.043	0					79	34	4	0	0	0	1.0616	1	1134	1134		37.812	0.65241	1	1967200			5755	5679	3522	3537	7375	7375					-0.08327024065624755
CTYCKLFIN	9	Unmodified	_CTYCKLFIN_					0	0	0		ENST00000329082.11_1_15:93586676-93586832:-|nuORF	ENST00000329082.11_1_15:93586676-93586832:-|nuORF	ENST00000329082.11_1_15:93586676-93586832:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.7647705078125	2	552.764463	1103.51437	0.10897	6.0237E-05	-0.28059	-0.0001551	-0.17162	-9.4865E-05	552.7642702556785	16.908	0.31072	16.76	16.661	16.972	-0.14753					22	10	3	0	0	0	0.94809	1	105	105		29.15	4.6304	1	51436			5756	12316	3523	3538	7376	7376					-0.03324361537806908
CTYFGADGREA	11	Unmodified	_CTYFGADGREA_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MSMS	OPSCC_40_ClassI_Rep-1	4	595.2503662109375	2	595.250763	1188.48697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.727	1	70.455	69.955	70.955	-0.27185								0	0	0	1.0397	1	8238	8238		41.427	2.673	1		+		5757	20465	3524	3539	7377	7377					-0.09973173544494784
CVAHSFDL	8	Unmodified	_CVAHSFDL_					0	0	0			REV__ENST00000413755.5_1_20:37063835-37063979:-|nuORF	REV__ENST00000413755.5_1_20:37063835-37063979:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.2322998046875	2	446.205096	890.395638	-1.3536	-0.000604	-1.708	-0.00076213	-3.0617	-0.0013661	446.204678402973	37.973	0.30193	37.973	37.769	38.071	0					12	8	2	0	0	0	0.027866	1	3137	3137		20.482	16.797	1	99221	+		5758	32026	3525	3540	7378	7378					-0.05394392451182739
CVAKIIEVV	9	Unmodified	_CVAKIIEVV_					0	0	0			REV__ENSG00000066654|ENST00000396083|THUMPD1	REV__ENSG00000066654|ENST00000396083|THUMPD1	MSMS	OPSCC_40_ClassI_Rep-1	4	487.2897644042969	2	487.291171	972.567789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.34	1	102.21	101.71	102.71	-0.12931								0	0	0	0.61872	1	12705	12705		37.159	2.9866	1		+		5759	20341	3526	3541	7379	7379					0.08040759236348549
CVARPGTPSL	10	Unmodified	_CVARPGTPSL_					0	0	0		nc|ENSG00000185453|Q86XI8|ZSWIM9;ENSG00000185453|ENST00000614654|ZSWIM9	nc|ENSG00000185453|Q86XI8|ZSWIM9	nc|ENSG00000185453|Q86XI8|ZSWIM9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.28997802734375	2	500.765852	999.51715	-0.41252	-0.00020657	2.3561	0.0011798	1.9436	0.00097327	501.26897049214114	89.749	1.8003	89.622	88.405	90.205	-0.12774					52	42	2	0	0	0	0.03519	1	10819	10819		29.17	1.0886	1	62111			5760	9439	3527	3542	7380	7380					0.017372299113503686
CVARPGTPSL	10	Unmodified	_CVARPGTPSL_					0	0	0		nc|ENSG00000185453|Q86XI8|ZSWIM9;ENSG00000185453|ENST00000614654|ZSWIM9	nc|ENSG00000185453|Q86XI8|ZSWIM9	nc|ENSG00000185453|Q86XI8|ZSWIM9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.765852	999.51715	-0.10425	-5.2203E-05	-0.022649	-1.1342E-05	-0.12689	-6.3544E-05	500.7661192578646	89.705	1.1721	89.568	89.107	90.279	-0.13762	-0.027004	-0.0016253	NaN	29.17	50	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136180			5761	9439	3527	3542							0.017372299113503686
CVCCQDCMSH	10	Unmodified	_CVCCQDCMSH_					0	0	0			REV__ENST00000504260.5_1_17:47783523-47784713:-|nuORF	REV__ENST00000504260.5_1_17:47783523-47784713:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7224731445312	2	564.673607	1127.33266	0.11076	6.2545E-05	-4.1661	-0.0023525	-4.0554	-0.00229	564.6729830189968	49.515	0.22822	49.334	49.23	49.458	-0.18071					6	5	2	0	0	0	0.03519	1	4959	4959		2.7184	0	1	72028	+		5762	33979	3528	3543	7381	7381					-0.22591108889059797
CVCRRSKA	8	Unmodified	_CVCRRSKA_					0	0	0			REV__ENST00000374677.7_1_6:33170845-33171339:+|nuORF	REV__ENST00000374677.7_1_6:33170845-33171339:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	461.7372741699219	2	461.739114	921.463675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.52	1	106.53	106.03	107.03	0.0018311								0	0	0	0.83467	1	13597	13597		31.955	4.0726	1		+		5763	31302	3529	3544	7382	7382					-0.00019846072154905414
CVCVRLTL	8	Carbamidomethyl (C)	_CVC(Carbamidomethyl (C))VRLTL_	C(0.033)VC(0.967)VRLTL		C(-15)VC(15)VRLTL		0	1	0			REV__ENST00000274712.7_1_5:140085371-140085428:+|nuORF	REV__ENST00000274712.7_1_5:140085371-140085428:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2611389160156	2	482.259348	962.504143	0.531	0.00025608	2.6366	0.0012715	3.1676	0.0015276	482.26051797588315	87.197	2.1662	87.218	86.634	88.801	0.021263					148	51	4	0	0	0	0.80469	1	10909	10909		58.782	7.4465	2	1988400	+		5764	29838	3530	3545	7383	7383	390				0.02139075527611567
CVELKFQNSC	10	Unmodified	_CVELKFQNSC_					0	0	0			REV__nc|ENSG00000291102|Q15486|GUSBP1	REV__nc|ENSG00000291102|Q15486|GUSBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.2827758789062	2	585.767734	1169.52091	-0.20884	-0.00012233	0.34525	0.00020223	0.13641	7.9904E-05	585.7676429914085	51.776	1.3165	51.657	51.005	52.322	-0.11876					54	34	3	0	0	0	0.03519	1	5244	5244		90.37	35.594	1	730480	+		5765	37237	3531	3546	7384	7384					-0.05706468377093188
CVELKFQNSC	10	Unmodified	_CVELKFQNSC_					0	0	0			REV__nc|ENSG00000291102|Q15486|GUSBP1	REV__nc|ENSG00000291102|Q15486|GUSBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.281982421875	2	585.767734	1169.52091	0.2918	0.00017093	-0.30361	-0.00017784	-0.011808	-6.9165E-06	585.7669962928657	51.094	0.26852	50.914	50.834	51.102	-0.18071					10	6	2	0	0	0	0.03519	1	5230	5230		64.207	19.83	1	59195	+		5766	37237	3531	3546	7385	7385					-0.05706468377093188
CVEPLQGLN	9	Unmodified	_CVEPLQGLN_					0	0	0			REV__ZNF132|p.R429Kfs*4|1|0.1|ENSG00000131849|chr19:58434158-58434159|-/T|frameshift_variant	REV__ZNF132|p.R429Kfs*4|1|0.1|ENSG00000131849|chr19:58434158-58434159|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2615966796875	2	486.744585	971.474617	-1.4294	-0.00069576	0.96665	0.00047051	-0.46276	-0.00022525	486.74505579704845	39.029	1.3447	39.053	38.361	39.706	0.023727					53	36	2	0	0	0	0.024319	1	3162	3162		47.657	0	1	257750	+		5767	23239	3532	3547	7386	7386					-0.01226165216883146
CVFTCLWF	8	Unmodified	_CVFTCLWF_					0	0	0			REV__ENST00000373109.6_1_10:73820069-73820282:-|nuORF	REV__ENST00000373109.6_1_10:73820069-73820282:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7452392578125	2	509.729892	1017.44523	-1.2727	-0.00064873	-3.6248	-0.0018477	-4.8975	-0.0024964	510.2296973402397	38.952	0.11146	38.976	38.882	38.993	0.023727					4	2	2	0	0	0	0.027866	1	3244	3244		14.664	0	1	32441	+		5768	31237	3533	3548	7387	7387					-0.06279400766720755
CVFTFKKIH	9	Unmodified	_CVFTFKKIH_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.8096313476562	2	561.810062	1121.60557	-0.1375	-7.7247E-05	-0.021933	-1.2322E-05	-0.15943	-8.9569E-05	561.8099426261734	18.655	0.39184	18.524	18.302	18.694	-0.13147					16	7	3	0	0	0	0.94809	1	308	308		29.15	0	1	89832	+		5769	24935	3534	3549	7388	7388					0.049632702218104896
CVFTFKKIH	9	Unmodified	_CVFTFKKIH_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.810062	1121.60557	2.2725	0.0012767	-2.6291	-0.0014771	-0.35659	-0.00020034	561.8085124609169	18.438	0.43925	18.438	18.235	18.674	0	-0.11863	-0.00041682	NaN	29.15	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93215	+		5770	24935	3534	3549							0.049632702218104896
CVFTFKKIH	9	Unmodified	_CVFTFKKIH_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	561.810062	1121.60557	-0.1375	-7.7247E-05	-0.021933	-1.2322E-05	-0.15943	-8.9569E-05	561.8099426261734	18.655	0.39184	18.524	18.302	18.694	-0.13147	-0.032516	0.0025127	NaN	29.15	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89832	+		5771	24935	3534	3549							0.049632702218104896
CVFTFKKIH	9	Unmodified	_CVFTFKKIH_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	561.810062	1121.60557	3.442	0.0019338	-3.6593	-0.0020558	-0.21727	-0.00012206	561.8079529231576	18.644	0.39212	18.708	18.55	18.942	0.063307	0.15115	-0.0015744	NaN	29.15	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70442	+		5772	24935	3534	3549							0.049632702218104896
CVGHARYSTI	10	Unmodified	_CVGHARYSTI_					0	0	0			REV__PDHA2|p.Y123C|1|0.26|ENSG00000163114|chr4:95840518-95840518|A/G|missense_variant	REV__PDHA2|p.Y123C|1|0.26|ENSG00000163114|chr4:95840518-95840518|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.7741088867188	2	553.774208	1105.53386	-0.4445	-0.00024615	-0.39188	-0.00021701	-0.83638	-0.00046316	553.7740274911052	84.668	1.3704	84.693	84.248	85.618	0.025536					77	32	4	0	0	0	0.57594	1	10525	10525		79.713	0.26157	1	1799100	+		5773	25535	3535	3550	7389	7389					-0.014682692026781297
CVGKLAIIN	9	Unmodified	_CVGKLAIIN_					0	0	0			REV__MAP3K9|p.R207K|1|0.44|ENSG00000006432|chr14:70800867-70800867|C/T|missense_variant	REV__MAP3K9|p.R207K|1|0.44|ENSG00000006432|chr14:70800867-70800867|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7775573730469	2	465.775688	929.536823	-0.55999	-0.00026083	2.6843	0.0012503	2.1243	0.00098945	465.7766822638725	81.647	2.1767	81.647	81.258	83.435	0					127	51	3	0	0	0	0.90698	1	10140	10140		31.955	1.4512	1	1363800	+		5774	36350	3536	3551	7390	7390					0.06923605922099796
CVGKLAIIN	9	Unmodified	_CVGKLAIIN_					0	0	0			REV__MAP3K9|p.R207K|1|0.44|ENSG00000006432|chr14:70800867-70800867|C/T|missense_variant	REV__MAP3K9|p.R207K|1|0.44|ENSG00000006432|chr14:70800867-70800867|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7777404785156	2	465.775688	929.536823	0.37671	0.00017546	3.7484	0.0017459	4.1251	0.0019214	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.92825	1	9718	9718		30.504	2.6214	1	1283800	+		5775	36350	3536	3551	7391	7391					0.06923605922099796
CVGKLAIIN	9	Unmodified	_CVGKLAIIN_					0	0	0			REV__MAP3K9|p.R207K|1|0.44|ENSG00000006432|chr14:70800867-70800867|C/T|missense_variant	REV__MAP3K9|p.R207K|1|0.44|ENSG00000006432|chr14:70800867-70800867|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.77764892578125	2	465.775688	929.536823	0.30012	0.00013979	3.7382	0.0017412	4.0383	0.001881	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.80658	1	9822	9822		38.806	3.1879	1	1281300	+		5776	36350	3536	3551	7392	7392					0.06923605922099796
CVHASCALLY	10	Unmodified	_CVHASCALLY_					0	0	0		ENST00000590444.5_1_19:6475849-6475978:-|nuORF;ENST00000590818.5_1_19:6475623-6475978:-|nuORF;nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C	ENST00000590444.5_1_19:6475849-6475978:-|nuORF	ENST00000590444.5_1_19:6475849-6475978:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.2899169921875	2	540.254262	1078.49397	-0.56976	-0.00030782	2.3685	0.0012796	1.7988	0.0009718	540.2554184773908	66.508	0.34663	66.259	66.021	66.368	-0.24839					12	8	2	0	0	0	0.03519	1	7621	7621		71.296	5.3982	1	91994			5777	10442	3537	3552	7393	7393					-0.04213532197627501
CVHGAGPLPQ	10	Unmodified	_CVHGAGPLPQ_					0	0	0			REV__ENST00000414624.6_1_11:61645294-61658904:-|nuORF	REV__ENST00000414624.6_1_11:61645294-61658904:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2765808105469	2	489.744919	977.475285	-1.0186	-0.00049887	-0.243	-0.00011901	-1.2616	-0.00061787	489.74463706144076	64.754	0.85885	64.492	63.976	64.835	-0.2626					39	22	3	0	0	0	0.03519	1	7627	7627		35.618	0	1	281980	+		5778	32043	3538	3553	7394	7394					-0.014353257771631434
CVIELQQGYDE	11	Unmodified	_CVIELQQGYDE_					0	0	0			REV__ENSG00000126524|ENST00000246868|SBDS	REV__ENSG00000126524|ENST00000246868|SBDS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	648.7916259765625	2	648.79246	1295.57037	-3.411	-0.002213	2.0442	0.0013263	-1.3667	-0.00088671	648.7937161332941	90.321	0.82086	90.166	89.864	90.685	-0.1552					49	19	3	0	0	0	0.76305	1	11049	11049		59.931	1.6845	1	2490600	+		5779	22901	3539	3554	7395	7395					-0.06559481887302354
CVIGLALVSL	10	Unmodified	_CVIGLALVSL_					0	0	0			REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF	REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.3006286621094	2	494.298996	986.583439	0.57173	0.00028261	2.7614	0.001365	3.3331	0.0016476	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	1.0781	1	12349	12349		35.618	0	1	37513000	+		5780	33653	3540	3555	7396	7396					0.08961045753392227
CVIYAGGVTL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))VIYAGGVTL_	C(1)VIYAGGVTL		C(71)VIYAGGVTL		0	1	0			REV__ENSG00000154309|ENST00000675850|DISP1	REV__ENSG00000154309|ENST00000675850|DISP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.7753295898438	2	526.775885	1051.53722	-1.2402	-0.00065331	-1.0176	-0.00053603	-2.2578	-0.0011893	526.7752267657015	80.488	1.8543	80.336	79.504	81.359	-0.15168					88	44	3	0	0	0	0.65054	1	9960	9960		71.296	10.324	1	1081300	+		5781	24954	3541	3556	7397	7397	329				0.013509808512935706
CVKKPLLV	8	Unmodified	_CVKKPLLV_					0	0	0			REV__ENST00000340020.10_1_1:222842709-222842775:-|nuORF	REV__ENST00000340020.10_1_1:222842709-222842775:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.27471923828125	2	450.290974	898.567395	-0.45626	-0.00020545	8.5949E-05	3.8702E-08	-0.45617	-0.00020541	450.2911681688535	92.081	0.19847	92.081	91.902	92.101	0					7	4	2	0	0	0	0.027866	1	11644	11644		12.959	0	1	192710	+		5782	30607	3542	3557	7398	7398					0.11405384307147415
CVKPISCDL	9	Unmodified	_CVKPISCDL_					0	0	0		ENST00000524630.5_1_11:57520988-57558858:+|nuORF;ENST00000528395.1_1_11:57480275-57558858:+|nuORF;ENST00000529919.5_1_11:57520766-57558858:+|nuORF;ENST00000358694.10_1_11:57529333-57558858:+|nuORF;ENST00000532649.5_1_11:57529333-57559018:+|nuORF	ENST00000524630.5_1_11:57520988-57558858:+|nuORF	ENST00000524630.5_1_11:57520988-57558858:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2524719238281	2	489.243363	976.472174	-1.1446	-0.00055998	-1.6784	-0.00082114	-2.823	-0.0013811	489.24205042196724	79.648	0.75369	79.476	79.192	79.945	-0.17225					40	17	3	0	0	0	0.024447	1	9881	9881		32.812	0	1	292310			5783	12720	3543	3558	7399	7399					-0.017003369462031515
CVKRDIITI	9	Unmodified	_CVKRDIITI_					0	0	0			REV__nc|ENSG00000145649|P12544-2|GZMA	REV__nc|ENSG00000145649|P12544-2|GZMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7655639648438	2	530.812802	1059.61105	-0.64944	-0.00034473	-0.19358	-0.00010276	-0.84302	-0.00044749	530.8124511619558	40.166	0.37837	40.054	39.83	40.208	-0.11223					12	9	2	0	0	0	0.024354	1	3506	3506		38.806	1.647	1	88038	+		5784	24420	3544	3559	7400	7400					0.08362949013621801
CVKRMKKK	8	Unmodified	_CVKRMKKK_					0	0	0			REV__ENST00000560532.1_1_15:59193425-59193485:-|nuORF	REV__ENST00000560532.1_1_15:59193425-59193485:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7899475097656	2	510.812082	1019.60961	-0.4578	-0.00023385	0.21759	0.00011115	-0.24021	-0.0001227	510.81200251340755	43.173	0.34213	42.935	42.719	43.061	-0.23736					11	8	2	0	0	0	0.027866	1	3909	3909		12.959	0	1	141840	+		5785	35150	3545	3560	7401	7401					0.10059036443885816
CVLEIAVKL	9	Unmodified	_CVLEIAVKL_					0	0	0		ENST00000559164.5_1_15:49913287-49917361:+|nuORF	ENST00000559164.5_1_15:49913287-49917361:+|nuORF	ENST00000559164.5_1_15:49913287-49917361:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.3008728027344	2	494.298996	986.583439	0.57173	0.00028261	2.7614	0.001365	3.3331	0.0016476	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	0.77768	1	12318	12318		40.778	5.5774	1	37513000			5786	16771	3546	3561	7402	7402					0.08961045753392227
CVLILILNI	9	Unmodified	_CVLILILNI_					0	0	0			REV__nc|ENSG815|Q902F8|ERVK-8_env;REV__nc|ENSG840|P61565|ERVK-21_env;REV__nc|ENSG821|P63135|ERVK-7_pol	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.33294677734375	2	507.325014	1012.63547	-0.12088	-6.1326E-05	2.8971	0.0014698	2.7762	0.0014085	507.32630913696727	41.488	1.1744	41.365	41.051	42.225	-0.12317					84	33	4	0	0	0	0.64155	1	3737	3737		50.025	0.48849	1	4814400	+		5787	37249;37251;37248	3547	3562	7403	7403					0.1296620916715483
CVLILILNI	9	Unmodified	_CVLILILNI_					0	0	0			REV__nc|ENSG815|Q902F8|ERVK-8_env;REV__nc|ENSG840|P61565|ERVK-21_env;REV__nc|ENSG821|P63135|ERVK-7_pol	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2897033691406	2	507.325014	1012.63547	0.17154	8.7024E-05	2.7695	0.001405	2.9411	0.0014921	507.3261235839522	43.426	0.65308	43.457	43.229	43.882	0.030827					23	17	2	0	0	0	0.024325	1	4051	4051		50.025	14.824	1	292280	+		5788	37249;37251;37248	3547	3562	7404	7404					0.1296620916715483
CVLNTVPPI	9	Unmodified	_CVLNTVPPI_					0	0	0		nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;nc|ENSG00000171735|Q9Y6Y1-3|CAMTA1;nc|ENSG00000171735|Q9Y6Y1-4|CAMTA1;CAMTA1|p.I777Sfs*57|1|0.12|ENSG00000171735|chr1:7664875-7664875|G/-|frameshift_variant	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2673645019531	2	478.267696	954.520839	-0.26785	-0.0001281	1.5731	0.00075235	1.3052	0.00062425	478.26818709594977	69.693	0.75461	69.707	69.351	70.105	0.014053					58	18	5	0	0	0	0.42604	1	8307	8307		64.207	0.901	1	1459500			5789	8188	3548	3563	7405	7405					0.04175899685196782
CVPRRGRN	8	Unmodified	_CVPRRGRN_					0	0	0			REV__ENST00000438284.2_1_3:11302203-11302380:+|nuORF	REV__ENST00000438284.2_1_3:11302203-11302380:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2458190917969	2	479.261602	956.508651	-1.2307	-0.00058983	-0.28702	-0.00013756	-1.5177	-0.00072739	479.26188722420335	51.642	0.44868	51.372	51.241	51.689	-0.27038					14	11	2	0	0	0	0.027866	1	5293	5293		26.796	0	1	148440	+		5790	32491	3549	3564	7406	7406					0.028657207853939326
CVQAYCSELDL	11	Unmodified	_CVQAYCSELDL_					0	0	0			REV__ENSG00000181284|ENST00000323206|TMEM102	REV__ENSG00000181284|ENST00000323206|TMEM102	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	3	415.18263	1242.52606	-0.24408	-0.00010134	-2.3416	-0.00097218	-2.5857	-0.0010735	415.18161762539046	21.033	0.68223	21.033	20.562	21.244	0					25	13	3	0	0	0	0.024759	1	629	629		29.551	7.865	1	28033	+		5791	27395	3550	3565	7407	7407					-0.08550209305144563
CVQDVLGAAV	10	Unmodified	_CVQDVLGAAV_					0	0	0		ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	ENSG00000167487|ENST00000300976|KLHL26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.751953125	2	487.75241	973.490267	-0.21452	-0.00010463	0.028222	1.3765E-05	-0.1863	-9.0868E-05	487.75213715109004	75.336	0.81181	75.346	75.012	75.824	0.010376					43	21	3	0	0	0	0.62431	1	9171	9171		74.255	10.048	1	1535000			5792	7691	3551	3566	7408	7408					0.0024612130016521405
CVQFCFLCISC	11	Unmodified	_CVQFCFLCISC_					0	0	0			REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3	REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.51312255859375	3	422.511036	1264.51128	-0.11506	-4.8613E-05	4.1862	0.0017687	4.0712	0.0017201	422.51335710581304	31.637	1.8259	31.706	31.327	33.153	0.06896					157	46	7	0	0	0	1.0327	1	2110	2110		29.551	1.9068	1	32141000	+		5793	25551	3552	3567	7409	7409					-0.11039695978479358
CVQTTSYATEV	11	Unmodified	_CVQTTSYATEV_					0	0	0			REV__ENST00000376257.7_1_6:31127078-31127210:+|nuORF	REV__ENST00000376257.7_1_6:31127078-31127210:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.88775634765625	3	401.185028	1200.53325	0.46505	0.00018657	3.6258	0.0014546	4.0909	0.0016412	401.18671968203967	22.786	0.55559	22.584	22.33	22.886	-0.20199					13	11	2	0	0	0	0.024735	1	828	828		12.957	0	1	46790	+		5794	31351	3553	3568	7410	7410					-0.05899153433074389
CVQYKEIVK	9	Unmodified	_CVQYKEIVK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2781372070312	2	555.30481	1108.59507	-0.21804	-0.00012108	2.4374	0.0013535	2.2194	0.0012324	555.3056240205768	41.571	0.52485	41.435	41.215	41.74	-0.13553					28	13	3	0	0	0	0.024477	1	3708	3708		27.882	10.517	1	437480			5795	4485	3554	3569	7411	7411					0.04511242776743529
CVRCGLSILL	10	Unmodified	_CVRCGLSILL_					0	0	0			REV__ENST00000288532.10_1_12:120941315-120941441:-|nuORF	REV__ENST00000288532.10_1_12:120941315-120941441:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7992553710938	2	538.80138	1075.58821	-0.24174	-0.00013025	-4.1087	-0.0022138	-4.3504	-0.002344	538.7988436957988	87.325	0.50574	87.325	87.067	87.573	0					36	11	4	0	0	0	0.57594	1	10983	10983		79.713	7.0927	1	1745000	+		5796	29927	3555	3570	7412	7412					0.05343606624524
CVRCGLSILL	10	Unmodified	_CVRCGLSILL_					0	0	0			REV__ENST00000288532.10_1_12:120941315-120941441:-|nuORF	REV__ENST00000288532.10_1_12:120941315-120941441:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.7994384765625	2	538.80138	1075.58821	-0.22619	-0.00012187	-4.0664	-0.002191	-4.2926	-0.0023129	538.7988701172369	87.331	0.63268	87.296	86.899	87.532	-0.035362					36	14	4	0	0	0	0.94316	1	10945	10945		51.193	1.1592	1	1842000	+		5797	29927	3555	3570	7413	7413					0.05343606624524
CVRKGIGFPI	10	Unmodified	_CVRKGIGFPI_					0	0	0			REV__ENSG00000155016|ENST00000332884|CYP2U1	REV__ENSG00000155016|ENST00000332884|CYP2U1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.3330688476562	2	545.315512	1088.61647	0.53244	0.00029035	1.1411	0.00062223	1.6735	0.00091258	545.3160732794149	97.831	1.2624	97.694	97.014	98.276	-0.1367					41	29	2	0	0	0	0.03519	1	12034	12034		21.96	5.4867	1	92996	+		5798	24987	3556	3571	7414	7414					0.07570672596125405
CVRVLWGPAH	10	Unmodified	_CVRVLWGPAH_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2677001953125	2	569.302936	1136.59132	2.2111	0.0012588	-3.173	-0.0018064	-0.9619	-0.00054761	569.3010878527697	19.069	0.44489	18.835	18.533	18.978	-0.23345					15	8	3	0	0	0	0.03519	1	334	334		29.15	14.285	1	28278			5799	18454	3557	3572	7415	7415					0.02848617793529229
CVSLHFLL	8	Unmodified	_CVSLHFLL_					0	0	0		ENST00000601237.5_1_19:53122096-53138333:-|nuORF	ENST00000601237.5_1_19:53122096-53138333:-|nuORF	ENST00000601237.5_1_19:53122096-53138333:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.2582092285156	2	466.257131	930.499709	1.3694	0.0006385	1.8983	0.00088511	3.2678	0.0015236	466.2580440849707	72.21	0.84602	72.219	71.765	72.611	0.0097733					41	21	3	0	0	0	0.85409	1	8706	8706		54.765	3.572	1	685040			5800	17510	3558	3573	7416	7416					0.03167934376335779
CVSLHFLL	8	Unmodified	_CVSLHFLL_					0	0	0		ENST00000601237.5_1_19:53122096-53138333:-|nuORF	ENST00000601237.5_1_19:53122096-53138333:-|nuORF	ENST00000601237.5_1_19:53122096-53138333:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.257131	930.499709	0.27134	0.00012652	2.7281	0.001272	2.9994	0.0013985	466.2584455256195	72.186	0.59534	72.186	71.978	72.573	0	-0.03341	0.00019977	NaN	54.765	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386200			5801	17510	3558	3573							0.03167934376335779
CVSLHFLL	8	Unmodified	_CVSLHFLL_					0	0	0		ENST00000601237.5_1_19:53122096-53138333:-|nuORF	ENST00000601237.5_1_19:53122096-53138333:-|nuORF	ENST00000601237.5_1_19:53122096-53138333:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.257131	930.499709	0.86223	0.00040202	2.6281	0.0012254	3.4903	0.0016274	466.2583699824367	72.534	0.74882	72.253	71.92	72.668	-0.28124	0.03337	0.00010654	NaN	54.765	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519170			5802	17510	3558	3573							0.03167934376335779
CVSLQCMNP	9	Unmodified	_CVSLQCMNP_					0	0	0		ENST00000474766.1_1_1:36787303-36788053:+|nuORF	ENST00000474766.1_1_1:36787303-36788053:+|nuORF	ENST00000474766.1_1_1:36787303-36788053:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.2851867675781	2	497.711373	993.408193	-0.24498	-0.00012193	-3.2814	-0.0016332	-3.5264	-0.0017551	497.70958548050663	34.147	0.77903	33.94	33.587	34.366	-0.20696					37	19	2	0	0	0	0.024495	1	2555	2555		42.396	21.449	1	1915400			5803	15039	3559	3574	7417	7417					-0.08877440374806156
CVSMNENL	8	Unmodified	_CVSMNENL_					0	0	0			REV__ENSG00000167601|ENST00000301178|AXL	REV__ENSG00000167601|ENST00000301178|AXL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2421875	2	455.193871	908.373188	-1.4591	-0.00066419	0.67953	0.00030932	-0.7796	-0.00035487	455.19410393885795	38.279	0.63895	38.306	38.092	38.731	0.027275					21	17	2	0	0	0	0.027866	1	3170	3170		42.396	0	1	145320	+		5804	26160	3560	3575	7418	7418					-0.08466359911108157
CVTIILVPM	9	Unmodified	_CVTIILVPM_					0	0	0			REV__nc|ENSG00000112038|P35372-15|OPRM1	REV__nc|ENSG00000112038|P35372-15|OPRM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3009948730469	2	494.782124	987.549696	9.4859E-05	4.6934E-08	-4.0717	-0.0020146	-4.0716	-0.0020146	494.7813017962097	96.682	0.30862	96.682	96.484	96.792	0					9	6	2	0	0	0	0.024466	1	12333	12333		18.324	0	1	34216	+		5805	21961	3561	3576	7419	7419					0.0554230098998687
CVTYFVSLF	9	Unmodified	_CVTYFVSLF_					0	0	0			REV__ENSG00000155249|ENST00000641172|OR4K1	REV__ENSG00000155249|ENST00000641172|OR4K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8372802734375	2	539.767529	1077.5205	1.0534	0.00056858	2.135	0.0011524	3.1884	0.001721	539.768267798101	18.957	1.449	18.957	18.333	19.782	0					61	29	3	0	0	0	0.024535	1	289	289		25.45	0	1	169330	+		5806	24997	3562	3577	7420	7420					-0.015155200346498532
CVVIWVLPL	9	Unmodified	_CVVIWVLPL_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6;REV__nc|ENSG00000091262|O95255-3|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2382202148438	2	521.311906	1040.60926	0.14035	7.3165E-05	1.8947	0.00098774	2.0351	0.0010609	521.3127714607475	63.527	0.64729	63.334	63.069	63.717	-0.19243					39	16	3	0	0	0	0.024475	1	7225	7225		21.702	6.8375	1	1400300	+		5807	20906;36506	3563	3578	7421	7421					0.09057939995682318
CVVLLISADI	10	Unmodified	_CVVLLISADI_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4;SLC5A4|p.F163_A164insCVVWSSC|1|0.1|ENSG00000100191|chr22:32239079-32239080|-/CAACTAGACCATACAACACAG|inframe_insertion	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.30322265625	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	1.0541	1	10777	10777		38.806	1.647	1	11897000			5808	2146	3564	3579	7422	7422					0.06840724545190824
CVVLLISADI	10	Unmodified	_CVVLLISADI_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4;SLC5A4|p.F163_A164insCVVWSSC|1|0.1|ENSG00000100191|chr22:32239079-32239080|-/CAACTAGACCATACAACACAG|inframe_insertion	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3035278320312	2	523.301736	1044.58892	0.15341	8.0282E-05	3.71	0.0019415	3.8635	0.0020218	523.3035843070627	90.16	1.1956	90.173	89.798	90.993	0.013443					81	28	4	0	0	0	0.941	2	11311	11311;11323		51.335	7.2187	1	1080600			5809	2146	3564	3579	7423;7424	7423					0.06840724545190824
CVVVVLLLQG	10	Unmodified	_CVVVVLLLQG_					0	0	0		ENST00000309862.10_1_17:37829058-37830070:-|nuORF;nc|ENSG00000161395|Q96FM1-2|PGAP3;nc|ENSG00000161395|Q96FM1-3|PGAP3;ENSG00000161395|ENST00000300658|PGAP3	ENST00000309862.10_1_17:37829058-37830070:-|nuORF	ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2665405273438	2	521.820095	1041.62564	0.50384	0.00026291	2.9294	0.0015286	3.4332	0.0017915	521.8215349778562	50.936	0.37094	50.659	50.407	50.778	-0.27643					16	9	2	0	0	0	0.03519	1	5179	5179		53.351	0	1	163840			5810	6873	3565	3580	7425	7425					0.10649021161793826
CVWPPVLL	8	Unmodified	_CVWPPVLL_					0	0	0		ENST00000375094.3_1_6:32146374-32147471:+|nuORF	ENST00000375094.3_1_6:32146374-32147471:+|nuORF	ENST00000375094.3_1_6:32146374-32147471:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7725524902344	2	463.762049	925.509546	-0.58917	-0.00027323	0.87591	0.00040622	0.28675	0.00013298	463.7624761501472	23.541	0.33489	23.48	23.308	23.643	-0.06086					11	7	2	0	0	0	0.027866	1	938	938		33.493	0	1	37747			5811	13147	3566	3581	7426	7426					0.04381122381732894
CVYFICLL	8	Unmodified	_CVYFICLL_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L;ENST00000478837.5_1_1:155313099-155314055:-|nuORF	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.76092529296875	2	487.247917	972.481282	0.32739	0.00015952	-3.5955	-0.0017519	-3.2681	-0.0015924	487.24579115770734	25.443	0.45986	25.272	25.076	25.536	-0.17151					24	10	4	0	0	0	0.027866	1	1181	1181		24.504	4.5072	1	94396			5812	3553	3567	3582	7427	7427					-0.006059435898805532
CVYQQASLW	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))VYQQASLW_	C(1)VYQQASLW		C(82)VYQQASLW		0	1	0		ENSG00000175556|ENST00000371628|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENST00000481285.5_1_X:118146936-118151650:+|nuORF	ENSG00000175556|ENST00000371628|LONRF3	ENSG00000175556|ENST00000371628|LONRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.7701416015625	2	577.768591	1153.52263	0.063227	3.6531E-05	1.8756	0.0010837	1.9389	0.0011202	577.7699631171276	51.784	1.3205	51.665	51.319	52.64	-0.11875					90	34	4	0	0	0	0.25032	2	5350	5338;5350		82.305	16.502	1	22463000			5813	8572	3568	3583	7428;7429	7429	106				-0.04799091296854385
CVYQQASLW	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))VYQQASLW_	C(1)VYQQASLW		C(88)VYQQASLW		0	1	0		ENSG00000175556|ENST00000371628|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3;ENST00000481285.5_1_X:118146936-118151650:+|nuORF	ENSG00000175556|ENST00000371628|LONRF3	ENSG00000175556|ENST00000371628|LONRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.7705688476562	2	577.768591	1153.52263	-2.5374	-0.001466	3.8089	0.0022007	1.2715	0.00073466	577.7712916747643	52.047	1.8135	51.778	51.438	53.252	-0.26903					138	47	7	0	0	0	0.20967	1	5368	5368		87.754	8.3033	1	24549000			5814	8572	3568	3583	7430	7430	106				-0.04799091296854385
CWALWVAVPKA	11	Unmodified	_CWALWVAVPKA_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3360595703125	2	622.336444	1242.65834	0.2866	0.00017836	-0.16946	-0.00010546	0.11714	7.29E-05	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.0844	1	13572	13572		15.642	0	1	1619900			5815	5788	3569	3584	7431	7431					0.046712282846101516
CWGPPALSIT	10	Unmodified	_CWGPPALSIT_					0	0	0		ENST00000571750.5_1_16:74678484-74678547:-|nuORF	ENST00000571750.5_1_16:74678484-74678547:-|nuORF	ENST00000571750.5_1_16:74678484-74678547:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7927856445312	2	522.762778	1043.511	-0.42319	-0.00022123	2.801	0.0014643	2.3778	0.001243	522.7642723201863	44.132	1.1439	44.169	43.959	45.103	0.0369					43	32	3	0	0	0	0.03519	1	4285	4285		45.952	16.802	1	490520			5816	17046	3570	3585	7432	7432					-0.009012883201648947
CWGPPALSIT	10	Unmodified	_CWGPPALSIT_					0	0	0		ENST00000571750.5_1_16:74678484-74678547:-|nuORF	ENST00000571750.5_1_16:74678484-74678547:-|nuORF	ENST00000571750.5_1_16:74678484-74678547:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.762778	1043.511	-1.5783	-0.00082507	4.5473	0.0023771	2.969	0.0015521	522.765312963091	44.056	0.95673	44.056	43.836	44.793	0	-0.046252	0.00072801	NaN	55.504	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528960			5817	17046	3570	3585							-0.009012883201648947
CWGPPALSIT	10	Unmodified	_CWGPPALSIT_					0	0	0		ENST00000571750.5_1_16:74678484-74678547:-|nuORF	ENST00000571750.5_1_16:74678484-74678547:-|nuORF	ENST00000571750.5_1_16:74678484-74678547:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.762778	1043.511	-1.2887	-0.00067369	4.1533	0.0021712	2.8646	0.0014975	522.7650623204413	44.226	0.40926	44.081	43.883	44.292	-0.14471	-0.020787	0.00031614	NaN	55.504	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514600			5818	17046	3570	3585							-0.009012883201648947
CWRERRVWLVR	11	Unmodified	_CWRERRVWLVR_					0	0	0			REV__ENST00000503969.5_1_5:76414257-76443501:+|nuORF	REV__ENST00000503969.5_1_5:76414257-76443501:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.32177734375	3	520.289378	1557.8463	2.4804	0.0012905	4.3375	0.0022567	6.8179	0.0035473	520.2912348828656	18.182	0.78409	18.182	17.647	18.431	0					28	15	3	0	0	0	0.024873	1	203	203		14.086	5.2867	1	121350	+		5819	33971	3571	3586	7433	7433					0.08969479261759261
CWYCWRTFRYP	11	Unmodified	_CWYCWRTFRYP_					0	0	0		ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3057861328125	3	527.569041	1579.68529	-0.54255	-0.00028623	-0.5541	-0.00029233	-1.0966	-0.00057856	527.568705331707	31.59	0.44288	31.602	31.299	31.742	0.011799					15	10	2	0	0	0	0.024876	1	2126	2126		13.508	11.985	1	205850			5820	3187	3572	3587	7434	7434					-0.08136031166509383
CYCPVKNDFFL	11	Unmodified	_CYCPVKNDFFL_					0	0	0		ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26849365234375	3	450.206998	1347.59917	0.047655	2.1455E-05	0.20697	9.318E-05	0.25463	0.00011463	450.20691791419	49.492	0.29375	49.341	49.113	49.407	-0.1512					10	7	2	0	0	0	0.024759	1	5059	5059		29.551	17.618	1	72725			5821	9131	3573	3588	7435	7435					-0.060730357918828304
CYDCQLQRS	9	Unmodified	_CYDCQLQRS_					0	0	0		ENST00000487376.5_1_6:30695627-30695732:-|nuORF	ENST00000487376.5_1_6:30695627-30695732:-|nuORF	ENST00000487376.5_1_6:30695627-30695732:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3221435546875	2	558.234058	1114.45356	-0.56988	-0.00031813	-0.082726	-4.618E-05	-0.6526	-0.00036431	558.2337938118362	29.405	0.8954	29.232	28.638	29.533	-0.17258					42	20	3	0	0	0	0.024381	1	1734	1734		37.159	0	1	248930			5822	15366	3574	3589	7436	7436					-0.09908498588060866
CYHFLFEHESH	11	Unmodified	_CYHFLFEHESH_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2704162597656	3	483.539916	1447.59792	-0.60956	-0.00029475	1.839	0.00088921	1.2294	0.00059446	483.8750520929678	31.714	0.64658	31.783	31.445	32.092	0.068962					21	15	2	0	0	0	0.024856	1	2114	2114		9.2118	1.8705	1	64075	+		5823	20261	3575	3590	7437	7437					-0.1079753383642128
CYHFLFEHESH	11	Unmodified	_CYHFLFEHESH_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	483.539916	1447.59792	-0.31773	-0.00015364	1.3228	0.00063962	1.005	0.00048598	483.54054894503906	32.028	0.78362	32.028	31.71	32.494	0	0.11917	-0.00052792	NaN	9.2118	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91641	+		5824	20261	3575	3590							-0.1079753383642128
CYHFLFEHESH	11	Unmodified	_CYHFLFEHESH_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	483.539916	1447.59792	-0.38158	-0.00018451	2.0294	0.00098128	1.6478	0.00079677	483.54094561562977	31.904	0.75598	31.916	31.465	32.221	0.011799	0.006611	0.00049706	NaN	9.2118	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102510	+		5825	20261	3575	3590							-0.1079753383642128
CYHSVTEKL	9	Unmodified	_CYHSVTEKL_					0	0	0		nc|ENSG00000170365|Q15797-2|SMAD1	nc|ENSG00000170365|Q15797-2|SMAD1	nc|ENSG00000170365|Q15797-2|SMAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3338623046875	2	540.263142	1078.51173	-0.94307	-0.00050951	-3.6042	-0.0019472	-4.5473	-0.0024567	540.2601347383338	78.427	0.9929	78.443	78.114	79.107	0.015907					34	23	3	0	0	0	0.024397	1	9725	9725		56.721	12.604	1	190990			5826	18505	3576	3591	7438	7438					-0.024384936711157934
CYIVIDIM	8	Oxidation (M)	_CYIVIDIM(Oxidation (M))_		CYIVIDIM(1)		CYIVIDIM(47)	0	0	1		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2426452636719	2	493.240289	984.466026	4.5707	0.0022544	-0.61276	-0.00030224	3.9579	0.0019522	493.23986708338924	17.548	0.34267	17.297	17.128	17.47	-0.25049					17	6	3	0	0	0	0.94001	1	162	162		46.766	9.738	1	402750			5827	6303	3577	3592	7439	7439		264			-0.026828551777043685
CYIVIRQLD	9	Unmodified	_CYIVIRQLD_					0	0	0			REV__nc|ENSG00000169436|Q8NFW1-2|COL22A1	REV__nc|ENSG00000169436|Q8NFW1-2|COL22A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.803955078125	2	561.802434	1121.59032	0.26038	0.00014628	2.5921	0.0014563	2.8525	0.0016026	561.8037817214752	19.374	0.88844	19.213	18.787	19.676	-0.1608					36	17	4	0	0	0	0.85329	1	421	421		35.618	5.3006	1	295800	+		5828	26369	3578	3593	7440	7440					0.0343835863395725
CYIVIRQLD	9	Unmodified	_CYIVIRQLD_					0	0	0			REV__nc|ENSG00000169436|Q8NFW1-2|COL22A1	REV__nc|ENSG00000169436|Q8NFW1-2|COL22A1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	561.802434	1121.59032	0.26038	0.00014628	2.5921	0.0014563	2.8525	0.0016026	561.8037817214752	19.374	0.88844	19.213	18.787	19.676	-0.1608	-0.057811	8.9324E-05	NaN	35.618	36	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295800	+		5829	26369	3578	3593							0.0343835863395725
CYIVIRQLD	9	Unmodified	_CYIVIRQLD_					0	0	0			REV__nc|ENSG00000169436|Q8NFW1-2|COL22A1	REV__nc|ENSG00000169436|Q8NFW1-2|COL22A1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	561.802434	1121.59032	0.7782	0.00043719	2.4524	0.0013778	3.2306	0.001815	561.8036701330465	19.529	0.6462	19.329	18.908	19.554	-0.2001	0.057811	-6.7667E-05	NaN	35.618	29	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249390	+		5830	26369	3578	3593							0.0343835863395725
CYLRRLKQEL	10	Unmodified	_CYLRRLKQEL_					0	0	0		ENSG00000197852|ENST00000357260|INKA2	ENSG00000197852|ENST00000357260|INKA2	ENSG00000197852|ENST00000357260|INKA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.25250244140625	3	441.251818	1320.73363	0.21199	9.354E-05	3.2628	0.0014397	3.4747	0.0015332	441.253271112877	110.45	0.57083	110.45	110.19	110.76	0.0069504					30	13	3	0	0	0	1.1117	1	13924	13924		16.717	1.3843	1	90698			5831	10055	3579	3594	7441	7441					0.08608785745059322
CYLVAALRQFV	11	Unmodified	_CYLVAALRQFV_					0	0	0			REV__ENST00000539776.1_1_11:61135370-61136178:+|nuORF	REV__ENST00000539776.1_1_11:61135370-61136178:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.3029479980469	3	428.237398	1281.69036	-0.21239	-9.0953E-05	-2.8204	-0.0012078	-3.0328	-0.0012988	428.2361280621919	69.656	0.20627	69.389	69.287	69.493	-0.26725					6	4	2	0	0	0	0.024736	1	8080	8080		25.126	0	1	53664	+		5832	24680	3580	3595	7442	7442					0.06078595967733236
CYMLALLLT	9	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))YM(Oxidation (M))LALLLT_	C(1)YMLALLLT	CYM(1)LALLLT	C(52)YMLALLLT	CYM(52)LALLLT	0	1	1		ENSG00000100528|ENST00000216416|CNIH1	ENSG00000100528|ENST00000216416|CNIH1	ENSG00000100528|ENST00000216416|CNIH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.2855834960938	2	557.287771	1112.56099	-0.38071	-0.00021216	-3.2297	-0.0017999	-3.6104	-0.002012	557.2859696019542	24.102	0.87561	24.102	23.866	24.741	0					43	19	4	0	0	0	0.60698	1	1033	1033		52.299	8.6484	1	1458100			5833	2213	3581	3596	7443	7443	30	84			0.009210782934815143
CYRNIAIAVI	10	Unmodified	_CYRNIAIAVI_					0	0	0			REV__ENSG00000102195|ENST00000218316|GPR50	REV__ENSG00000102195|ENST00000218316|GPR50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.330810546875	2	568.318251	1134.62195	-0.10757	-6.1134E-05	-3.2753	-0.0018614	-3.3828	-0.0019225	568.3164071438237	94.181	0.42336	94.033	93.825	94.249	-0.14771					17	9	2	0	0	0	0.03519	1	11566	11566		24.203	11.244	1	79864	+		5834	21296	3582	3597	7444	7444					0.060023513879059465
CYTKLLDSSWH	11	Unmodified	_CYTKLLDSSWH_					0	0	0		ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2373962402344	3	451.5483	1351.62307	-0.21753	-9.8223E-05	-4.438	-0.002004	-4.6555	-0.0021022	451.5462577065147	27.413	0.59086	27.256	26.93	27.521	-0.15664					20	13	2	0	0	0	0.024765	1	1445	1445		26.75	0	1	92189			5835	13491	3583	3598	7445	7445					-0.038674790338518505
CYTSLIDEL	9	Unmodified	_CYTSLIDEL_					0	0	0			REV__ENSG00000084652|ENST00000373610|TXLNA	REV__ENSG00000084652|ENST00000373610|TXLNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2841796875	2	528.749533	1055.48451	-0.41948	-0.0002218	4.0243	0.0021278	3.6048	0.001906	528.7518470019884	87.088	0.25208	87.088	86.984	87.236	0					6	5	2	0	0	0	0.022924	1	10953	10953		85.359	0	1	30673	+		5836	20734	3584	3599	7446	7446					-0.04101022002168975
CYTTTTIPK	9	Unmodified	_CYTTTTIPK_					0	0	0		ENSG00000180433|ENST00000641861|OR6K6;nc|ENSG00000180433|Q8NGW6|OR6K6	ENSG00000180433|ENST00000641861|OR6K6	ENSG00000180433|ENST00000641861|OR6K6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2943115234375	2	514.260068	1026.50558	-0.06201	-3.1889E-05	-3.2675	-0.0016803	-3.3295	-0.0017122	514.2582515205632	54.087	0.67543	53.889	53.456	54.131	-0.19739					27	20	2	0	0	0	0.024495	1	5674	5674		19.997	6.2214	1	507450			5837	8978	3585	3600	7447	7447					-0.006610119026390748
DAALNVLAR	9	Unmodified	_DAALNVLAR_					0	0	0			REV__ENSG00000235173|ENST00000347708|HGH1	REV__ENSG00000235173|ENST00000347708|HGH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7486267089844	2	471.771991	941.529429	0.26737	0.00012614	-0.92975	-0.00043863	-0.66237	-0.00031249	471.77141152372803	45.011	0.55413	45.055	44.756	45.311	0.043877					38	15	3	0	0	0	0.024405	1	4308	4308		14.865	8.5522	1	1956300	+		5838	28924	3586	3601	7448	7448					0.056325896460293734
DAALYSFR	8	Unmodified	_DAALYSFR_					0	0	0			REV__HIP1R|p.H697Y|1|0.19|ENSG00000130787|chr12:122858876-122858876|C/T|missense_variant	REV__HIP1R|p.H697Y|1|0.19|ENSG00000130787|chr12:122858876-122858876|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.26251220703125	2	471.737617	941.460681	-0.032439	-1.5303E-05	-4.2667	-0.0020128	-4.2991	-0.0020281	471.73551902155197	26.73	0.62007	26.707	26.364	26.984	-0.023088					37	14	4	0	0	0	0.027866	1	1349	1349		42.396	8.2236	1	600570	+		5839	36129	3587	3602	7449	7449					-0.012390746536652841
DAARKKGSN	9	Unmodified	_DAARKKGSN_					0	0	0			REV__ENSG00000196700|ENST00000369888|ZNF512B	REV__ENSG00000196700|ENST00000369888|ZNF512B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.27166748046875	2	473.756872	945.499192	0.06479	3.0695E-05	2.9365	0.0013912	3.0013	0.0014219	473.7581343126763	47.404	1.0319	47.307	46.971	48.003	-0.096653					61	27	3	0	0	0	0.024447	1	4734	4734		13.454	0	1	1106500	+		5840	28217	3588	3603	7450	7450					0.024262309808591453
DAATAPRIV	9	Unmodified	_DAATAPRIV_					0	0	0			REV__ENST00000463236.5_1_X:23801468-23802475:+|nuORF	REV__ENST00000463236.5_1_X:23801468-23802475:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2893981933594	2	457.258717	912.50288	0.46337	0.00021188	-2.7212	-0.0012443	-2.2578	-0.0010324	457.25753781185176	93.862	0.52198	93.862	93.645	94.167	0					18	12	2	0	0	0	0.024323	1	11900	11900		44.117	5.3107	1	225720	+		5841	23081	3589	3604	7451	7451					0.043129007547122455
DACRVCCGW	9	Unmodified	_DACRVCCGW_					0	0	0			REV__chr16:2967604-2967810|496|39.64|0.86|5.53|+|2|KREMEN2,KREMEN2|1	REV__chr16:2967604-2967810|496|39.64|0.86|5.53|+|2|KREMEN2,KREMEN2|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7142028808594	2	506.693515	1011.37248	-0.31843	-0.00016135	-4.0934	-0.0020741	-4.4118	-0.0022354	506.69167784689387	34.269	0.19214	34.062	33.968	34.16	-0.20696					10	4	3	0	0	0	0.024541	1	2517	2517		12.207	3.3845	1	566450	+		5842	19381	3590	3605	7452	7452					-0.13275477831791704
DADDAVYELN	10	Unmodified	_DADDAVYELN_					0	0	0		SRSF6|p.R46L|1|1.0|ENSG00000124193|chr20:43458390-43458390|G/T|missense_variant;ENST00000605204.1_1_1:29486580-29492463:-|nuORF;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4	SRSF6|p.R46L|1|1.0|ENSG00000124193|chr20:43458390-43458390|G/T|missense_variant	SRSF6|p.R46L|1|1.0|ENSG00000124193|chr20:43458390-43458390|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.8295288085938	2	562.740751	1123.46695	-1.1489	-0.00064652	-2.8723	-0.0016164	-4.0212	-0.0022629	562.7389101484355	44.102	0.33037	43.883	43.709	44.04	-0.21939					12	8	2	0	0	0	0.03519	1	4055	4055		8.6937	0	1	262660			5843	3546	3591	3606	7453	7453					-0.08984646003477792
DADIYLLDD	9	Unmodified	_DADIYLLDD_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.3147583007812	2	526.742762	1051.47097	0.4827	0.00025426	4.4077	0.0023217	4.8904	0.002576	526.7452531522723	75.591	0.87727	75.601	75.326	76.203	0.010376					21	14	2	0	0	0	0.024457	1	9176	9176		29.15	3.6994	1	219520			5844	4092	3592	3607	7454	7454					-0.052705565097539875
DADLIVTLVT	10	Unmodified	_DADLIVTLVT_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1;REV__DAG1|p.A355Efs*82|1|0.25|ENSG00000173402|chr3:49531575-49531585|CTCCTCCAGTC/-|frameshift_variant	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7852172851562	2	530.300247	1058.58594	-0.59788	-0.00031706	3.1687	0.0016803	2.5708	0.0013633	530.3018446942626	53.594	0.21691	53.594	53.474	53.691	0					9	5	2	0	0	0	0.03519	1	5788	5788		32.812	2.3088	1	153750	+		5845	26770;19649	3593	3608	7455	7455					0.05899172692056709
DADPPQVKV	9	Unmodified	_DADPPQVKV_					0	0	0			REV__ENSG00000132664|ENST00000377603|POLR3F	REV__ENSG00000132664|ENST00000377603|POLR3F	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7586669921875	2	484.756007	967.497461	0.36891	0.00017883	4.4439	0.0021542	4.8128	0.002333	484.75798906802964	17.252	0.2525	17.109	16.977	17.229	-0.14278					9	5	2	0	0	0	0.98128	1	141	141		24.203	2.2429	1	27970	+		5846	23304	3594	3609	7456	7456					0.01241177172244079
DADSAKAPHY	10	Unmodified	_DADSAKAPHY_					0	0	0		NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant;nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	537.746337890625	2	537.74617	1073.47779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.146	1	29.968	29.468	30.468	-0.17818								0	0	0	0.68916	1	1897	1897		60.118	10.582	1				5847	2443	3595	3610	7457	7457					-0.05601198838508026
DADYKQWRKDA	11	Unmodified	_DADYKQWRKDA_					0	0	0		ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.8934326171875	3	465.893236	1394.65788	-0.76127	-0.00035467	0.36294	0.00016909	-0.39834	-0.00018558	465.89340150872135	30.072	1.2207	29.893	29.57	30.791	-0.17818					74	28	4	0	0	0	1.0147	1	1883	1883		33.542	0.50216	1	2256500			5848	8470	3596	3611	7458	7458					-0.023665199015340477
DAEEGCCHLL	10	Unmodified	_DAEEGCCHLL_					0	0	0		ENST00000524558.5_1_11:75280137-75280209:+|nuORF	ENST00000524558.5_1_11:75280137-75280209:+|nuORF	ENST00000524558.5_1_11:75280137-75280209:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3169555664062	2	545.220617	1088.42668	0.19593	0.00010682	-2.7547	-0.0015019	-2.5587	-0.0013951	545.7186203400065	87.412	0.25486	87.433	87.263	87.518	0.021263					8	5	3	0	0	0	0.03519	1	10919	10919		37.159	12.956	1	32943			5849	16065	3597	3612	7459	7459					-0.11399607199223283
DAEIMGKLL	9	Unmodified	_DAEIMGKLL_					0	0	0		ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.80535888671875	2	495.270435	988.526318	-0.51094	-0.00025305	3.2573	0.0016133	2.7464	0.0013602	495.2704385734672	39.817	0.50268	39.668	39.319	39.821	-0.1497					22	12	3	0	0	0	0.024541	1	3350	3350		17.365	11.052	1	336890			5850	12640	3598	3613	7460	7460					0.03159578477038849
DAEIMGKLL	9	Unmodified	_DAEIMGKLL_					0	0	0		ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	ENST00000355196.6_1_4:83821322-83821651:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.270435	988.526318	-0.20976	-0.00010389	3.3732	0.0016707	3.1635	0.0015668	495.27020441530914	40.046	0.42706	39.821	39.501	39.928	-0.22501	0.03518	0.003414	NaN	17.365	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352570			5851	12640	3598	3613							0.03159578477038849
DAELLTKLC	9	Unmodified	_DAELLTKLC_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7818603515625	2	503.267893	1004.52123	-0.39995	-0.00020128	0.95468	0.00048046	0.55473	0.00027918	503.268241198677	47.603	0.38092	47.603	47.43	47.811	0					14	11	2	0	0	0	0.024405	1	4804	4804		27.882	0	1	414570	+		5852	24671	3599	3614	7461	7461					0.01915274614395912
DAEPQPVAPV	10	Unmodified	_DAEPQPVAPV_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.305419921875	2	511.761289	1021.50803	-0.24893	-0.00012739	2.0775	0.0010632	1.8285	0.00093577	511.761367875847	66.419	0.4632	66.138	65.788	66.251	-0.28149					22	11	3	0	0	0	0.03519	1	7831	7831		32.812	1.1781	1	470820	+		5853	26244	3600	3615	7462	7462					-0.0018684017333043812
DAEVKPATV	9	Unmodified	_DAEVKPATV_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2691955566406	2	465.250557	928.486562	0.62929	0.00029278	-0.11153	-5.1888E-05	0.51776	0.00024089	465.2513861757738	65.752	0.56958	65.784	65.554	66.123	0.032242					25	14	2	0	0	0	0.02366	1	7748	7748		54.722	0	1	88977	+		5854	27773	3601	3616	7463	7463					0.019457747979686246
DAEVMSIEDI	10	Unmodified	_DAEVMSIEDI_					0	0	0			REV__nc|ENSG00000140451|Q9H611-4|PIF1	REV__nc|ENSG00000140451|Q9H611-4|PIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.7824096679688	2	561.255179	1120.49581	1.1043	0.00061977	-1.7647	-0.00099047	-0.66049	-0.0003707	561.2540633627092	64.054	0.84174	64.054	63.736	64.578	0					69	22	4	0	0	0	0.03519	1	7607	7607		26.693	0	1	3390200	+		5855	24017	3602	3617	7464	7464					-0.059622446986850264
DAFIHVDDF	9	Unmodified	_DAFIHVDDF_					0	0	0		ENSG00000156413|ENST00000318336|FUT6;ENSG00000171124|ENST00000303225|FUT3;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5	ENSG00000156413|ENST00000318336|FUT6	ENSG00000156413|ENST00000318336|FUT6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2948608398438	2	539.745639	1077.47673	-0.073395	-3.9615E-05	3.7937	0.0020476	3.7203	0.002008	540.2499126759218	81.41	0.79099	81.217	80.8	81.591	-0.19334					32	18	3	0	0	0	0.024523	1	9751	9751		37.159	12.64	1	101510			5856	4417	3603	3618	7465	7465					-0.05891413207450569
DAFLKRPI	8	Unmodified	_DAFLKRPI_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2872619628906	2	480.287277	958.560001	0.60488	0.00029052	-0.7243	-0.00034787	-0.11942	-5.7358E-05	480.2868066668766	49.803	0.67129	49.622	49.23	49.901	-0.18071					52	17	4	0	0	0	0.6248	1	5035	5035		73.975	2.679	1	2233400			5857	3615	3604	3619	7466	7466					0.07906368031081001
DAFLLLRNN	9	Unmodified	_DAFLLLRNN_					0	0	0		nc|ENSG00000124222|O14662-3|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16	nc|ENSG00000124222|O14662-3|STX16	nc|ENSG00000124222|O14662-3|STX16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3230590820312	2	538.298373	1074.58219	1.1252	0.0006057	1.1329	0.00060982	2.2581	0.0012155	538.3002833903261	82.708	0.92899	82.598	81.881	82.81	-0.11006					27	21	2	0	0	0	0.024261	1	10319	10319		54.776	7.119	1	105770			5858	4029	3605	3620	7467	7467					0.047885477088584594
DAFNMAEVN	9	Unmodified	_DAFNMAEVN_					0	0	0			REV__nc|ENSG00000119689|P36957-2|DLST	REV__nc|ENSG00000119689|P36957-2|DLST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7141418457031	2	505.716024	1009.4175	-0.59654	-0.00030168	-3.0847	-0.00156	-3.6813	-0.0018617	505.71448929860196	29.203	1.6572	29.03	28.003	29.66	-0.17258					107	38	5	0	0	0	0.70156	1	1763	1763		45.972	0.020292	1	1697700	+		5859	22478	3606	3621	7468	7468					-0.08683632493261939
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.28851318359375	2	480.287277	958.560001	1.125	0.00054034	-0.1653	-7.9392E-05	0.95973	0.00046095	480.287458687791	65.777	0.72943	65.777	65.494	66.224	0					61	18	4	0	0	0	0.89627	1	7819	7819		51.335	0	1	6733900			5860	773	3607	3622	7469	7469					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2882080078125	2	480.287277	958.560001	0.10248	4.922E-05	0.98198	0.00047163	1.0845	0.00052085	480.2880112423214	66.129	0.69138	65.856	65.568	66.26	-0.27282					54	17	4	0	0	0	0.83003	1	7823	7823		56.721	1.9447	1	7446300			5861	773	3607	3622	7470	7470					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2880554199219	2	480.287277	958.560001	-0.10628	-5.1045E-05	0.91754	0.00044068	0.81126	0.00038964	480.2880051124295	65.834	0.64575	65.864	65.552	66.197	0.030098					56	16	4	0	0	0	0.50717	1	7728	7728		84.916	2.675	1	6345600			5862	773	3607	3622	7471	7471					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2872314453125	2	480.287277	958.560001	0.57039	0.00027395	-0.55803	-0.00026801	0.012368	5.9404E-06	480.2867940648063	49.712	0.8694	49.607	49.025	49.894	-0.10558					57	22	4	0	0	0	0.53523	3	5024	5000;5024;5036		82.305	5.4584	1	2310500			5863	773	3607	3622	7472;7473;7474	7473					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2872009277344	2	480.287277	958.560001	0.23365	0.00011222	-0.2669	-0.00012819	-0.033245	-1.5967E-05	480.28710687765704	66.05	0.95341	65.809	65.457	66.41	-0.24145					76	23	5	0	0	0	0.50717	3	7562	7562;7574;7588		84.916	10.66	1	7515400			5864	773	3607	3622	7475;7476;7477	7475					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2870788574219	2	480.287277	958.560001	-0.83972	-0.0004033	0.68771	0.0003303	-0.152	-7.3005E-05	480.2875290363212	65.999	1.028	65.786	65.421	66.449	-0.21327					81	25	5	0	0	0	0.50717	4	7552	7541;7552;7564;7576		84.916	2.675	1	7017800			5865	773	3607	3622	7478;7479;7480;7481	7479					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.28765869140625	2	480.287277	958.560001	0.60488	0.00029052	-0.7243	-0.00034787	-0.11942	-5.7358E-05	480.2868066668766	49.803	0.67129	49.622	49.23	49.901	-0.18071					52	17	4	0	0	0	0.47665	1	5017	5017		87.754	2.8388	1	2233400			5866	773	3607	3622	7482	7482					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.28765869140625	2	480.287277	958.560001	-0.20623	-9.9049E-05	0.07579	3.6401E-05	-0.13044	-6.2647E-05	480.28724246529	66.025	1.0632	65.774	65.353	66.416	-0.25112					79	26	4	0	0	0	0.53593	3	7552	7529;7552;7564		82.241	10.363	1	6789200			5867	773	3607	3622	7483;7484;7485	7484					0.07906368031081001
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.287277	958.560001	-0.08268	-3.971E-05	0.044229	2.1243E-05	-0.038451	-1.8467E-05	480.28711224064375	49.956	0.67407	49.677	49.24	49.914	-0.27977	0.041459	0.00036493	NaN	87.754	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546100			5868	773	3607	3622							0.07906368031081001
DAFRENKNV	9	Unmodified	_DAFRENKNV_					0	0	0		LYRM4|p.D48Sfs*6|1|0.08|ENSG00000214113|chr6:5216683-5216684|-/ATGAAACT|frameshift_variant;ENSG00000214113|ENST00000330636|LYRM4	LYRM4|p.D48Sfs*6|1|0.08|ENSG00000214113|chr6:5216683-5216684|-/ATGAAACT|frameshift_variant	LYRM4|p.D48Sfs*6|1|0.08|ENSG00000214113|chr6:5216683-5216684|-/ATGAAACT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2759399414062	2	546.775262	1091.53597	-0.46757	-0.00025566	0.55306	0.0003024	0.085488	4.6743E-05	546.7754635396337	76.755	0.88405	76.755	75.956	76.84	0					28	21	2	0	0	0	0.024374	1	9410	9410		32.812	0	1	595280			5869	10544	3608	3623	7486	7486					-0.00613517193255575
DAFRENKNV	9	Unmodified	_DAFRENKNV_					0	0	0		LYRM4|p.D48Sfs*6|1|0.08|ENSG00000214113|chr6:5216683-5216684|-/ATGAAACT|frameshift_variant;ENSG00000214113|ENST00000330636|LYRM4	LYRM4|p.D48Sfs*6|1|0.08|ENSG00000214113|chr6:5216683-5216684|-/ATGAAACT|frameshift_variant	LYRM4|p.D48Sfs*6|1|0.08|ENSG00000214113|chr6:5216683-5216684|-/ATGAAACT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.775262	1091.53597	0.30914	0.00016903	-1.5211	-0.00083172	-1.212	-0.00066269	546.7741511744929	77.002	0.50694	76.75	76.356	76.863	-0.25162	0.01671	-0.0019459	NaN	32.812	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161050			5870	10544	3608	3623							-0.00613517193255575
DAFVRLIAL	9	Unmodified	_DAFVRLIAL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OPSCC_40_ClassI_Rep-2	5	509.30975341796875	2	509.30821	1016.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.709	1	83.54	83.04	84.04	-0.16915								0	0	0	0.42073	1	10116	10116		60.118	7.1816	1				5871	4087	3609	3624	7487	7487					0.09422923719591836
DAFYKNIV	8	Unmodified	_DAFYKNIV_					0	0	0		nc|ENSG00000145715|P20936-3|RASA1;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	nc|ENSG00000145715|P20936-3|RASA1	nc|ENSG00000145715|P20936-3|RASA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2554626464844	2	485.255643	968.496732	-0.58733	-0.00028501	0.52177	0.00025319	-0.065563	-3.1815E-05	485.25564965278016	61.01	0.63457	60.756	60.544	61.179	-0.25373					38	15	4	0	0	0	0.56592	1	6801	6801		79.451	20.669	1	1049200			5872	5828	3610	3625	7488	7488					0.011223825231809315
DAFYKNIV	8	Unmodified	_DAFYKNIV_					0	0	0		nc|ENSG00000145715|P20936-3|RASA1;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	nc|ENSG00000145715|P20936-3|RASA1	nc|ENSG00000145715|P20936-3|RASA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.255643	968.496732	-0.18228	-8.845E-05	0.020436	9.9165E-06	-0.16184	-7.8534E-05	485.25550018499246	60.956	0.75398	60.75	60.421	61.175	-0.20599	0.033434	-0.00015473	NaN	79.451	51	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129700			5873	5828	3610	3625							0.011223825231809315
DAFYKNIV	8	Unmodified	_DAFYKNIV_					0	0	0		nc|ENSG00000145715|P20936-3|RASA1;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	nc|ENSG00000145715|P20936-3|RASA1	nc|ENSG00000145715|P20936-3|RASA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.255643	968.496732	-0.93447	-0.00045346	-0.32421	-0.00015732	-1.2587	-0.00061078	485.25579864949106	60.819	0.63449	60.643	60.362	60.997	-0.1761	-0.073001	-0.00048921	NaN	79.451	50	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1103800			5874	5828	3610	3625							0.011223825231809315
DAGAGGGG	8	Unmodified	_DAGAGGGG_					0	0	0		ENST00000503023.1_1_5:14664906-14678798:+|nuORF	ENST00000503023.1_1_5:14664906-14678798:+|nuORF	ENST00000503023.1_1_5:14664906-14678798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.794921875	1	561.22633	560.219054	0.6162	0.00034583	2.8092	0.0015766	3.4254	0.0019224	561.2278009836374	71.19	0.88116	70.902	70.546	71.427	-0.28858					35	21	2	0	0	0	0.027866	1	8632	8632		21.702	0	1	794390			5875	15683	3611	3626	7489	7489					-0.07864685289939644
DAGAPLLVL	9	Unmodified	_DAGAPLLVL_					0	0	0			REV__nc|ENSG00000124074|Q9H0I2-2|ENKD1	REV__nc|ENSG00000124074|Q9H0I2-2|ENKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.8027648925781	2	434.760561	867.506569	-0.0095449	-4.1498E-06	0.3329	0.00014473	0.32336	0.00014058	434.76057824292576	66.442	0.7216	66.197	65.732	66.453	-0.24517					33	18	2	0	0	0	0.024262	1	7547	7547		30.504	0	1	413190	+		5876	22728	3612	3627	7490	7490					0.06751570528570028
DAGARVQIL	9	Unmodified	_DAGARVQIL_					0	0	0		ENST00000403683.1_1_1:149825385-149825556:+|nuORF	ENST00000403683.1_1_1:149825385-149825556:+|nuORF	ENST00000403683.1_1_1:149825385-149825556:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75628662109375	2	471.771991	941.529429	0.63406	0.00029913	-1.1394	-0.00053754	-0.50534	-0.00023841	471.77115986397496	42.635	0.54815	42.661	42.493	43.042	0.026012					22	14	2	0	0	0	0.023837	1	3894	3894		37.812	8.662	1	284390			5877	13699	3613	3628	7491	7491					0.05632589646052111
DAGCLPAEEV	10	Unmodified	_DAGCLPAEEV_					0	0	0		nc|ENSG00000180448|Q92619-2|ARHGAP45;ENSG00000180448|ENST00000313093|ARHGAP45;ENST00000587602.5_1_19:1073185-1086002:+|nuORF	nc|ENSG00000180448|Q92619-2|ARHGAP45	nc|ENSG00000180448|Q92619-2|ARHGAP45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7724304199219	2	502.223682	1002.43281	-1.2103	-0.00060785	-2.0303	-0.0010197	-3.2406	-0.0016275	502.2225589689721	55.646	0.44088	55.43	55.268	55.709	-0.21551					17	11	2	0	0	0	0.03519	1	5958	5958		5.9211	0	1	175290			5878	8979	3614	3629	7492	7492					-0.06830765696065555
DAGEYSCE	8	Unmodified	_DAGEYSCE_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;OBSCN-CASZ1|1|fusion	nc|ENSG00000154358|Q5VST9|OBSCN;OBSCN-CASZ1|1|fusion	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.88134765625	2	437.150183	872.285813	-0.37375	-0.00016338	-0.55461	-0.00024245	-0.92835	-0.00040583	437.14993933176146	39.666	0.16044	39.442	39.343	39.503	-0.22311					5	3	2	0	0	0	0.027866	1	3357	3357		18.324	0	1	92531			5879	6406;18899	3615	3630	7493	7493					-0.15543862581012036
DAGFFVFVL	9	Unmodified	_DAGFFVFVL_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|2|1|sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|2|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7680969238281	2	507.768386	1013.52222	0.28736	0.00014591	-1.6302	-0.00082777	-1.3429	-0.00068186	507.76761062247033	58.981	1.2766	59.067	58.63	59.906	0.085682					136	34	8	0	0	0	0.52323	1	6650	6650		57.811	7.7867	1	22914000	+		5880	37596	3616	3631	7494	7494					0.01599857045630415
DAGFGPLVL	9	Unmodified	_DAGFGPLVL_					0	0	0			REV__ENST00000405731.7_1_7:6618297-6620275:+|nuORF	REV__ENST00000405731.7_1_7:6618297-6620275:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.2249755859375	2	444.744911	887.475269	-0.77428	-0.00034436	-4.428	-0.0019693	-5.2023	-0.0023137	444.7433418127835	29.722	0.84639	29.549	29.199	30.046	-0.17258					42	19	4	0	0	0	0.024325	1	1899	1899		24.203	9.3379	1	528120	+		5881	31915	3617	3632	7495	7495					0.027029974944639434
DAGFTLRWV	9	Unmodified	_DAGFTLRWV_					0	0	0		nc|ENSG00000035403|P18206-2|VCL;ENSG00000035403|ENST00000211998|VCL	nc|ENSG00000035403|P18206-2|VCL	nc|ENSG00000035403|P18206-2|VCL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2755737304688	2	532.779816	1063.54508	-0.48469	-0.00025823	2.6605	0.0014175	2.1758	0.0011592	532.7806371890852	49.515	0.81128	49.364	49.043	49.854	-0.1512					46	21	4	0	0	0	0.024263	1	5147	5147		51.335	3.6781	1	1141700			5882	1030	3618	3633	7496	7496					0.01584876163087756
DAGFVDLVSEV	11	Unmodified	_DAGFVDLVSEV_					0	0	0			REV__ENSG00000146828|ENST00000354161|SLC12A9	REV__ENSG00000146828|ENST00000354161|SLC12A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	574.8361206054688	2	575.784961	1149.55537	-0.18254	-0.00010511	0.99173	0.00057103	0.80919	0.00046592	575.7853301623543	52.216	1.2859	52.069	51.12	52.406	-0.14735					69	35	3	0	0	0	0.024795	1	5469	5469		60.118	33.425	1	496470	+		5883	24512	3619	3634	7497	7497					-0.013426056930029517
DAGFVDLVSEV	11	Unmodified	_DAGFVDLVSEV_					0	0	0			REV__ENSG00000146828|ENST00000354161|SLC12A9	REV__ENSG00000146828|ENST00000354161|SLC12A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.8368530273438	2	575.784961	1149.55537	-1.2906	-0.00074309	1.7538	0.0010098	0.46318	0.00026669	575.7859409746799	51.812	1.2421	51.899	51.116	52.358	0.087006					71	33	3	0	0	0	0.024787	1	5405	5405		58.23	17.452	1	312030	+		5884	24512	3619	3634	7498	7498					-0.013426056930029517
DAGGASGLR	9	Unmodified	_DAGGASGLR_					0	0	0			REV__ENST00000572174.5_1_17:5324737-5326150:+|nuORF	REV__ENST00000572174.5_1_17:5324737-5326150:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	401.2619934082031	2	402.203941	802.39333	2.262	0.00090979	0.66678	0.00026818	2.9288	0.001178	402.2041905092691	85.37	0.33549	85.37	85.164	85.5	0					11	7	2	0	0	0	0.024292	1	10691	10691		13.454	0	1	48451	+		5885	35420	3620	3635	7499	7499					-0.01577104864611556
DAGGEDAILQ	10	Unmodified	_DAGGEDAILQ_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENST00000467275.1_1_3:112256557-112257010:-|nuORF;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.27484130859375	2	494.732729	987.450904	0.66562	0.0003293	-2.7468	-0.0013589	-2.0811	-0.0010296	494.7312546576521	72.362	0.65744	72.081	71.807	72.465	-0.28124					26	16	2	0	0	0	0.03519	1	8777	8777		23.523	5.1983	1	175370			5886	18358;15553	3621	3636	7500	7500					-0.04332307449703876
DAGHDLLLQV	10	Unmodified	_DAGHDLLLQV_					0	0	0			REV__ENST00000609454.5_1_22:38228707-38236239:-|nuORF	REV__ENST00000609454.5_1_22:38228707-38236239:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7584838867188	2	540.787838	1079.56112	-1.5321	-0.00082854	1.3493	0.00072968	-0.18281	-9.8862E-05	540.7881842967823	47.591	0.61242	47.65	47.282	47.895	0.059097					43	18	4	0	0	0	0.03519	1	4668	4668		24.519	0	1	762620	+		5887	21052	3622	3637	7501	7501					0.024525376093379236
DAGKLVGLV	9	Unmodified	_DAGKLVGLV_					0	0	0		ENST00000551979.1_1_1:33489976-33502429:-|nuORF	ENST00000551979.1_1_1:33489976-33502429:-|nuORF	ENST00000551979.1_1_1:33489976-33502429:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.756103515625	2	436.26601	870.517468	-0.015959	-6.9624E-06	-0.13029	-5.6839E-05	-0.14624	-6.3801E-05	436.2656958964765	64.248	0.6974	63.987	63.722	64.419	-0.26022					39	18	3	0	0	0	0.024323	1	7485	7485		35.618	16.258	1	1043400			5888	16611	3623	3638	7502	7502					0.0770297290284816
DAGKLVGLV	9	Unmodified	_DAGKLVGLV_					0	0	0		ENST00000551979.1_1_1:33489976-33502429:-|nuORF	ENST00000551979.1_1_1:33489976-33502429:-|nuORF	ENST00000551979.1_1_1:33489976-33502429:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	436.26601	870.517468	1.9067	0.00083184	-2.0387	-0.0008894	-0.13195	-5.7565E-05	436.26491438082235	63.948	0.6515	63.993	63.759	64.411	0.045502	-0.030854	-0.00041315	NaN	35.618	36	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1441200			5889	16611	3623	3638							0.0770297290284816
DAGKLVGLV	9	Unmodified	_DAGKLVGLV_					0	0	0		ENST00000551979.1_1_1:33489976-33502429:-|nuORF	ENST00000551979.1_1_1:33489976-33502429:-|nuORF	ENST00000551979.1_1_1:33489976-33502429:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	436.26601	870.517468	0.070347	3.069E-05	-4.5109	-0.0019679	-4.4405	-0.0019372	436.26264969948335	64.31	0.1954	64.117	64.038	64.234	-0.19243	0.093108	-0.0025702	NaN	35.618	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26381			5890	16611	3623	3638							0.0770297290284816
DAGLPDKSK	9	Unmodified	_DAGLPDKSK_					0	0	0			REV__nc|ENSG00000243641|P0DN81|OR13C7	REV__nc|ENSG00000243641|P0DN81|OR13C7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7957458496094	2	465.748182	929.481811	-0.26562	-0.00012371	0.52616	0.00024506	0.26054	0.00012135	465.7483533547073	55.231	0.69944	55.329	55.083	55.782	0.098015					32	18	2	0	0	0	0.02435	1	6017	6017		14.137	0	1	604770	+		5891	37162	3624	3639	7503	7503					0.014248906551983964
DAGLSIIGPR	10	Unmodified	_DAGLSIIGPR_					0	0	0		nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7674255371094	2	499.785099	997.555644	0.29117	0.00014552	-0.35363	-0.00017674	-0.062459	-3.1216E-05	499.7847387708142	40.83	0.49947	40.83	40.551	41.051	0					26	13	3	0	0	0	0.03519	1	3583	3583		27.882	8.7787	1	409390			5892	10003	3625	3640	7504	7504					0.05676858817525954
DAGLSIIGPR	10	Unmodified	_DAGLSIIGPR_					0	0	0		nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.785099	997.555644	0.51482	0.0002573	-0.72249	-0.00036109	-0.20767	-0.00010379	499.7844388178423	40.975	0.4672	40.852	40.618	41.086	-0.12317	-0.042564	-0.00038581	NaN	14.865	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376820			5893	10003	3625	3640							0.05676858817525954
DAGLSIIGPR	10	Unmodified	_DAGLSIIGPR_					0	0	0		nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.785099	997.555644	-0.087654	-4.3808E-05	-0.032438	-1.6212E-05	-0.12009	-6.002E-05	499.78482435262595	40.978	0.59812	41.001	40.83	41.429	0.023006	0.1067	0.00030395	NaN	14.865	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351260			5894	10003	3625	3640							0.05676858817525954
DAGLSVLLEV	10	Unmodified	_DAGLSVLLEV_					0	0	0			REV__ENST00000555371.1_1_14:35871898-35872434:-|nuORF	REV__ENST00000555371.1_1_14:35871898-35872434:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.28839111328125	2	508.28714	1014.55973	-0.60262	-0.00030631	1.5326	0.00077899	0.92995	0.00047268	508.28782951481713	30.586	0.33175	30.66	30.586	30.917	0.074314					10	7	2	0	0	0	0.03519	1	1945	1945		47.657	8.4045	1	412560	+		5895	21162	3626	3641	7505	7505					0.053029035205895525
DAGMIDSVSL	10	Unmodified	_DAGMIDSVSL_					0	0	0			REV__ENST00000575203.5_1_16:68034415-68034469:-|nuORF	REV__ENST00000575203.5_1_16:68034415-68034469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2483215332031	2	504.239332	1006.46411	-1.5446	-0.00077883	2.7606	0.001392	1.216	0.00061318	504.23991713070006	60.226	1.2036	60.305	59.826	61.029	0.078884					64	31	3	0	0	0	0.03519	1	6927	6927		19.104	0	1	442920	+		5896	35457	3627	3642	7506	7506					-0.03886192661968835
DAGMKRAL	8	Unmodified	_DAGMKRAL_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.7249755859375	2	431.234187	860.453822	0.16957	7.3125E-05	-1.0011	-0.0004317	-0.83151	-0.00035857	431.2331238201371	36.55	0.36103	36.345	36.164	36.525	-0.20518					11	8	2	0	0	0	0.027866	1	2848	2848		60.294	23.135	1	48267			5897	2272	3628	3643	7507	7507					0.018012891940998088
DAGMKRAL	8	Unmodified	_DAGMKRAL_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	431.234187	860.453822	1.8891	0.00081465	-0.98184	-0.0004234	0.90727	0.00039125	431.23220562885933	36.469	0.31747	36.271	36.016	36.334	-0.19829	-0.036963	5.9618E-06	NaN	60.294	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41374			5898	2272	3628	3643							0.018012891940998088
DAGNYIKV	8	Unmodified	_DAGNYIKV_					0	0	0		ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.8539733886719	2	440.232168	878.449782	-0.23252	-0.00010236	0.43102	0.00018975	0.1985	8.7384E-05	440.2322900195632	31.632	0.64296	31.447	31.136	31.779	-0.18503					26	15	2	0	0	0	0.027866	1	2139	2139		25.45	0	1	282310			5899	3356	3629	3644	7508	7508					0.00569522972057257
DAGPAGLPGIG	11	Unmodified	_DAGPAGLPGIG_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2764587402344	2	462.742899	923.471246	-0.26723	-0.00012366	0.46335	0.00021441	0.19612	9.0751E-05	462.7428179048725	47.42	0.60868	47.42	47.076	47.685	0					32	17	3	0	0	0	0.024792	1	4708	4708		35.618	3.6634	1	665000			5900	18824	3630	3645	7509	7509					0.006449080007769226
DAGPAGLPGIG	11	Unmodified	_DAGPAGLPGIG_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.742899	923.471246	0.15154	7.0126E-05	-0.34185	-0.00015819	-0.19031	-8.8065E-05	462.7426071292204	47.613	0.54387	47.46	47.125	47.669	-0.15301	0.049804	-0.00019788	NaN	35.618	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701290			5901	18824	3630	3645							0.006449080007769226
DAGPAGLPGIG	11	Unmodified	_DAGPAGLPGIG_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.742899	923.471246	-0.29786	-0.00013783	0.29494	0.00013648	-0.0029253	-1.3537E-06	462.7429631380867	47.343	0.40595	47.402	47.179	47.585	0.059097	-0.00813	0.00039146	NaN	35.618	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	624920			5902	18824	3630	3645							0.006449080007769226
DAGPAGLPGIG	11	Unmodified	_DAGPAGLPGIG_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.742899	923.471246	-0.14264	-6.6005E-05	-0.29309	-0.00013563	-0.43573	-0.00020163	462.74274792032713	47.429	0.32098	47.332	47.2	47.521	-0.096649	-0.07778	-0.00015275	NaN	35.618	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226730			5903	18824	3630	3645							0.006449080007769226
DAGPAGLPGIG	11	Unmodified	_DAGPAGLPGIG_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.742899	923.471246	-0.14813	-6.8548E-05	-0.61711	-0.00028556	-0.76525	-0.00035411	462.7425079222013	47.75	0.50678	47.474	47.194	47.701	-0.27598	0.064271	-0.00045263	NaN	35.618	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178990			5904	18824	3630	3645							0.006449080007769226
DAGPAGLPGIG	11	Unmodified	_DAGPAGLPGIG_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.742899	923.471246	0.052351	2.4225E-05	-0.4657	-0.0002155	-0.41335	-0.00019127	462.74251661796177	47.558	0.36145	47.371	47.199	47.561	-0.18684	-0.038453	-0.0003125	NaN	35.618	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214070			5905	18824	3630	3645							0.006449080007769226
DAGPAPVPEV	10	Unmodified	_DAGPAPVPEV_					0	0	0			REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	REV__nc|ENSG00000290618|P0DPF6|CDRT15P3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7764892578125	2	476.242732	950.470912	1.3636	0.0006494	-0.46079	-0.00021945	0.9028	0.00042995	476.24259648253985	71.465	0.6807	71.465	71.223	71.904	0					20	17	2	0	0	0	0.03519	1	8663	8663		19.997	0	1	148810	+		5906	37228	3631	3646	7510	7510					-0.006305117190890996
DAGPARGRR	9	Unmodified	_DAGPARGRR_					0	0	0		ENST00000393062.6_2_16:89894915-89894945:+|nuORF	ENST00000393062.6_2_16:89894915-89894945:+|nuORF	ENST00000393062.6_2_16:89894915-89894945:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2436828613281	2	478.262656	954.51076	-0.39419	-0.00018853	3.5724	0.0017085	3.1782	0.00152	478.2640064927025	40.63	1.472	40.653	40.126	41.597	0.023006					59	41	3	0	0	0	0.024405	1	3511	3511		27.882	7.8855	1	1541700			5907	13437	3632	3647	7511	7511					0.0316847279485728
DAGPDLVPSPD	11	Unmodified	_DAGPDLVPSPD_					0	0	0		ENSG00000198816|ENST00000597229|ZNF358	ENSG00000198816|ENST00000597229|ZNF358	ENSG00000198816|ENST00000597229|ZNF358	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.2853393554688	2	541.753661	1081.49277	-0.2816	-0.00015256	-3.6761	-0.0019915	-3.9577	-0.0021441	541.751782134126	39.891	0.51323	39.891	39.733	40.247	0					20	13	2	0	0	0	0.024747	1	3515	3515		31.53	4.8369	1	122780			5908	10210	3633	3648	7512	7512					-0.04471751761161613
DAGPEWPE	8	Unmodified	_DAGPEWPE_					0	0	0			REV__ENST00000561457.2_1_9:139007414-139007696:-|nuORF	REV__ENST00000561457.2_1_9:139007414-139007696:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.76116943359375	2	450.690333	899.366112	-0.57585	-0.00025953	-0.50563	-0.00022788	-1.0815	-0.00048742	450.69117554875646	39.165	0.3636	38.942	38.823	39.186	-0.22311					20	9	4	0	0	0	0.027866	1	3321	3321		7.1934	0	1	374670	+		5909	35173	3634	3649	7513	7513					-0.08759633195666083
DAGPRALPC	9	Unmodified	_DAGPRALPC_					0	0	0		ENST00000598168.5_2_19:50881110-50881788:+|nuORF	ENST00000598168.5_2_19:50881110-50881788:+|nuORF	ENST00000598168.5_2_19:50881110-50881788:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.74725341796875	2	450.22382	898.433086	-0.56945	-0.00025638	-2.3405	-0.0010538	-2.91	-0.0013101	450.2224294578979	31.154	0.91291	31.154	30.797	31.71	0					53	21	5	0	0	0	0.024412	1	2071	2071		31.955	0	1	688200			5910	17465	3635	3650	7514	7514					-0.020193011855667464
DAGPSKKVE	9	Unmodified	_DAGPSKKVE_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.76092529296875	2	465.748182	929.481811	-0.14523	-6.764E-05	-3.7312	-0.0017378	-3.8765	-0.0018055	465.7452947710431	45.318	0.25195	45.066	44.905	45.157	-0.25252					10	6	2	0	0	0	0.024477	1	4252	4252		14.865	0	1	74678	+		5911	20344	3636	3651	7515	7515					0.014248906551983964
DAGQCRWKLY	10	Unmodified	_DAGQCRWKLY_					0	0	0			REV__ENSG00000204345|ENST00000375352|CD300LD	REV__ENSG00000204345|ENST00000375352|CD300LD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7430725097656	3	413.869485	1238.58663	-0.12401	-5.1324E-05	-2.8551	-0.0011817	-2.9791	-0.001233	414.20268344006513	36.89	1.1076	36.928	36.613	37.721	0.038044					59	28	4	0	0	0	0.03519	1	2995	2995		22.562	12.458	1	326120	+		5912	28594	3637	3652	7516	7516					-0.02312311139871781
DAGQDPWPV	9	Unmodified	_DAGQDPWPV_					0	0	0		ENST00000379644.8_2_8:43055194-43055551:+|nuORF	ENST00000379644.8_2_8:43055194-43055551:+|nuORF	ENST00000379644.8_2_8:43055194-43055551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7244873046875	2	492.724707	983.43486	0.54853	0.00027028	-0.19584	-9.6496E-05	0.35269	0.00017378	492.7244610306081	72.157	0.88024	71.875	71.545	72.425	-0.28124					55	22	3	0	0	0	0.75397	1	8728	8728		42.396	0	1	1854000			5913	13278	3638	3653	7517	7517					-0.057519688959587256
DAGQKLVPTI	10	Unmodified	_DAGQKLVPTI_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.8162841796875	2	521.300581	1040.58661	-0.3945	-0.00020565	0.052096	2.7158E-05	-0.3424	-0.0001785	521.3019484556345	65.069	0.20206	64.813	64.739	64.941	-0.25563					5	4	2	0	0	0	0.03519	1	7410	7410		28.081	6.1216	1	35885	+		5914	20873	3639	3654	7518	7518					0.06794012131763338
DAGRGGPLL	9	Unmodified	_DAGRGGPLL_					0	0	0			REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7580261230469	2	428.237784	854.461016	0.012211	5.2291E-06	-0.69806	-0.00029893	-0.68585	-0.0002937	428.23736597475505	41.61	0.46474	41.61	41.36	41.825	0					27	12	3	0	0	0	0.024381	1	3719	3719		29.15	3.6994	1	198270	+		5915	29341	3640	3655	7519	7519					0.027963450661786737
DAGRGGPLL	9	Unmodified	_DAGRGGPLL_					0	0	0			REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	428.237784	854.461016	0.28465	0.0001219	-0.70982	-0.00030397	-0.42517	-0.00018207	428.2374146517737	41.709	0.52245	41.732	41.53	42.053	0.023006	0.077034	-7.2772E-05	NaN	15.642	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351610	+		5916	29341	3640	3655							0.027963450661786737
DAGRGGPLL	9	Unmodified	_DAGRGGPLL_					0	0	0			REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	428.237784	854.461016	0.24633	0.00010549	-0.49777	-0.00021316	-0.25144	-0.00010768	428.23745487783395	41.741	0.33295	41.618	41.385	41.718	-0.12299	-0.037538	0.00010884	NaN	15.642	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144260	+		5917	29341	3640	3655							0.027963450661786737
DAGRGGPLL	9	Unmodified	_DAGRGGPLL_					0	0	0			REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	REV__ENST00000565216.5_1_15:45879631-45894561:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	428.237784	854.461016	0.27171	0.00011635	-1.0222	-0.00043773	-0.75047	-0.00032138	428.2377190509032	41.892	0.42738	41.662	41.472	41.899	-0.2303	0.0069773	-0.0003403	NaN	15.642	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346760	+		5918	29341	3640	3655							0.027963450661786737
DAGRQRGI	8	Unmodified	_DAGRQRGI_					0	0	0		ENST00000374135.8_1_1:27216614-27216743:-|nuORF	ENST00000374135.8_1_1:27216614-27216743:-|nuORF	ENST00000374135.8_1_1:27216614-27216743:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.274169921875	2	436.738483	871.462413	0.538	0.00023497	-2.7389	-0.0011962	-2.2009	-0.00096122	436.73619332274694	52.716	0.53519	52.808	52.404	52.939	0.091938					15	13	2	0	0	0	0.027866	1	5592	5592		30.504	24.583	1	107710			5919	13099	3641	3656	7520	7520					0.02153979154957142
DAGRRLAR	8	Unmodified	_DAGRRLAR_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.781005859375	2	457.767575	913.520596	-1.0595	-0.000485	4.1851	0.0019158	3.1256	0.0014308	457.7692877739369	49.175	0.81168	49.25	48.842	49.654	0.074192					51	21	3	0	0	0	0.027866	1	4991	4991		37.159	9.2769	1	870800			5920	7128	3642	3657	7521	7521					0.06037660800222966
DAGRRVTW	8	Unmodified	_DAGRRVTW_					0	0	0		ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7896728515625	2	480.754133	959.493713	-0.50346	-0.00024204	-0.29007	-0.00013945	-0.79352	-0.00038149	480.75380465201573	33.612	0.42307	33.412	33.171	33.594	-0.20019					22	10	3	0	0	0	0.027866	1	2434	2434		17.365	0.89182	1	431970			5921	10332	3643	3658	7522	7522					0.012345521890324562
DAGTNLLLN	9	Unmodified	_DAGTNLLLN_					0	0	0			REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF	REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.28662109375	2	465.748182	929.481811	-0.036427	-1.6966E-05	0.30664	0.00014282	0.27021	0.00012585	465.7482270114616	61.486	0.61178	61.486	61.108	61.72	0					35	15	3	0	0	0	0.02435	1	7138	7138		9.1829	0	1	394480	+		5922	28711	3644	3659	7523	7523					0.014248906551983964
DAGVLALPVH	10	Unmodified	_DAGVLALPVH_					0	0	0		ENST00000374694.2_1_10:35928201-35929404:-|nuORF	ENST00000374694.2_1_10:35928201-35929404:-|nuORF	ENST00000374694.2_1_10:35928201-35929404:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2685852050781	2	496.282192	990.549831	-0.98971	-0.00049118	0.30634	0.00015203	-0.68337	-0.00033914	496.2817526328653	35.145	0.7629	35.123	34.866	35.629	-0.021767					42	19	3	0	0	0	0.03519	1	2638	2638		55.504	0	1	448720			5923	13129	3645	3660	7524	7524					0.05417760305851971
DAGVRFIG	8	Unmodified	_DAGVRFIG_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8943786621094	2	417.727052	833.439552	-0.66308	-0.00027699	0.4119	0.00017206	-0.25117	-0.00010492	417.7272669614052	30.523	0.71375	30.345	29.953	30.667	-0.17818					20	16	2	0	0	0	0.027866	1	1902	1902		31.955	0	1	420280			5924	8390	3646	3661	7525	7525					0.0161696003748375
DAGVTFPDL	9	Unmodified	_DAGVTFPDL_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.78173828125	2	467.729458	933.444362	0.01001	4.682E-06	3.5091	0.0016413	3.5191	0.001646	467.7309518981749	63.486	1.529	63.294	62.822	64.351	-0.19243					82	38	3	0	0	0	0.024381	1	7124	7124		21.96	0	1	505890		+	5925	484	3647	3662	7526	7526					-0.025022006104450156
DAGVTFPDL	9	Unmodified	_DAGVTFPDL_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	467.729458	933.444362	0.033832	1.5824E-05	3.8151	0.0017844	3.849	0.0018003	467.7310907445998	63.16	2.5739	63.16	62.446	65.02	0	-0.07413	0.00044966	NaN	27.882	152	68	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1585800		+	5926	484	3647	3662							-0.025022006104450156
DAGVTFPDL	9	Unmodified	_DAGVTFPDL_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	467.729458	933.444362	1.7914	0.00083791	2.0483	0.00095803	3.8397	0.0017959	467.73023483467426	63.143	2.6687	63.197	62.393	65.061	0.054104	-0.036552	-0.0012032	NaN	27.882	157	70	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1445000		+	5927	484	3647	3662							-0.025022006104450156
DAGVTFPDL	9	Unmodified	_DAGVTFPDL_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	467.729458	933.444362	0.045398	2.1234E-05	3.5867	0.0016776	3.6321	0.0016988	467.7309878780869	63.483	1.7358	63.255	62.684	64.42	-0.22773	0.021622	0.00023597	NaN	27.882	86	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453670		+	5928	484	3647	3662							-0.025022006104450156
DAGVYYVDP	9	Unmodified	_DAGVYYVDP_					0	0	0			REV__ENSG00000138050|ENST00000505747|THUMPD2	REV__ENSG00000138050|ENST00000505747|THUMPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7161865234375	2	499.726915	997.439277	0.047307	2.3641E-05	3.0196	0.001509	3.0669	0.0015326	499.7284579738805	71.507	0.57188	71.245	70.908	71.48	-0.26199					41	13	4	0	0	0	0.024323	1	8328	8328		27.882	0	1	484290	+		5929	23810	3648	3663	7527	7527					-0.059545044730498375
DAGWDRKPAE	10	Unmodified	_DAGWDRKPAE_					0	0	0			REV__ENSG00000131386|ENST00000339732|GALNT15	REV__ENSG00000131386|ENST00000339732|GALNT15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.83251953125	2	572.772719	1143.53089	-0.73152	-0.000419	-2.4006	-0.001375	-3.1321	-0.001794	572.7709441194457	74.907	1.296	74.917	74.139	75.435	0.010376					68	31	3	0	0	0	0.03519	1	9000	9000		15.642	0	1	252940	+		5930	23206	3649	3664	7528	7528					-0.035138210558670835
DAGYKILLEV	10	Unmodified	_DAGYKILLEV_					0	0	0			REV__ENSG00000143458|ENST00000368918|GABPB2	REV__ENSG00000143458|ENST00000368918|GABPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8319702148438	2	560.816064	1119.61758	-0.38648	-0.00021674	0.63973	0.00035877	0.25325	0.00014203	560.8160488035361	79.165	0.41285	79.165	78.951	79.364	0					17	9	2	0	0	0	0.03519	1	9803	9803		45.972	0	1	194740	+		5931	24251	3650	3665	7529	7529					0.06255165446009414
DAHLRPTSL	9	Unmodified	_DAHLRPTSL_					0	0	0		ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.2744140625	2	505.274898	1008.53524	-0.48648	-0.0002458	-0.059758	-3.0194E-05	-0.54623	-0.000276	505.2748957957047	38.071	1.0172	37.892	37.594	38.611	-0.17929					74	28	5	0	0	0	0.016758	5	3102	3092;3102;3114;3126;3140		153.04	47.386	1	20347000			5932	6064	3651	3666	7530;7531;7532;7533;7534	7531					0.03131688157714052
DAHLRPTSL	9	Unmodified	_DAHLRPTSL_					0	0	0		ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.27423095703125	2	505.274898	1008.53524	-0.92804	-0.00046892	0.34666	0.00017516	-0.58138	-0.00029376	505.27510760150705	38.138	1.1794	37.916	37.577	38.757	-0.22149					80	32	5	0	0	0	0.020687	5	3119	3097;3107;3119;3131;3145		148.99	35.224	1	19271000			5933	6064	3651	3666	7535;7536;7537;7538;7539	7537					0.03131688157714052
DAHLRPTSL	9	Unmodified	_DAHLRPTSL_					0	0	0		ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.2748107910156	2	505.274898	1008.53524	-0.90337	-0.00045645	0.37308	0.00018851	-0.53029	-0.00026794	505.27510663562305	38.158	1.1028	37.94	37.607	38.71	-0.21848					78	30	5	0	0	0	0.020687	5	3111	3090;3099;3111;3123;3137		148.99	42.388	1	16740000			5934	6064	3651	3666	7540;7541;7542;7543;7544	7542					0.03131688157714052
DAIICAKKI	9	Unmodified	_DAIICAKKI_					0	0	0		ENSG00000151033|ENST00000647634|LYZL2;nc|ENSG00000151033|Q7Z4W2-2|LYZL2	ENSG00000151033|ENST00000647634|LYZL2	ENSG00000151033|ENST00000647634|LYZL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7910461425781	2	487.788795	973.563038	0.33726	0.00016451	3.3292	0.001624	3.6665	0.0017885	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.92825	1	9952	9952		30.504	0.6621	1	1999500			5935	6172	3652	3667	7545	7545					0.0751987509358969
DAIKRGYDD	9	Unmodified	_DAIKRGYDD_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.268310546875	2	526.753995	1051.49344	0.081901	4.3142E-05	-1.6461	-0.00086707	-1.5642	-0.00082393	526.7536470352334	52.349	0.96915	52.441	52.119	53.088	0.091938					44	24	3	0	0	0	0.024374	1	5624	5624		40.778	0	1	477520			5936	2931	3653	3668	7546	7546					-0.030249123214844076
DAIQKELYV	9	Unmodified	_DAIQKELYV_					0	0	0			REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	REV__nc|ENSG00000144488|Q6ZVH7-2|ESPNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8029174804688	2	539.792589	1077.57063	-0.95586	-0.00051597	1.2584	0.00067927	0.30253	0.00016331	539.7932356197962	93.183	1.2525	93.178	92.776	94.028	-0.0042038					46	29	2	0	0	0	0.022832	1	11861	11861		93.195	2.4188	1	371120	+		5937	24339	3654	3669	7547	7547					0.03494305894855643
DAIRSRLI	8	Unmodified	_DAIRSRLI_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.3287353515625	2	472.287808	942.561064	1.0653	0.00050315	1.5414	0.00072796	2.6067	0.0012311	472.2866801796827	23.063	0.5957	22.872	22.572	23.167	-0.19117					21	12	3	0	0	0	0.027866	1	814	814		18.324	0	1	88740			5938	7602	3655	3670	7548	7548					0.08748582400005489
DAIRSRLI	8	Unmodified	_DAIRSRLI_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.287808	942.561064	-0.27819	-0.00013138	-3.1818	-0.0015027	-3.46	-0.0016341	472.2861589053697	23.131	0.54984	22.951	22.651	23.201	-0.17989	0.039861	-0.00214	NaN	38.806	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124740			5939	7602	3655	3670							0.08748582400005489
DAIRVTKTV	9	Unmodified	_DAIRVTKTV_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000120008|ENST00000263461|WDR11	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.8031311035156	2	501.800749	1001.58694	-0.28537	-0.0001432	3.5794	0.0017962	3.2941	0.001653	501.8023893203948	57.212	0.59213	57.307	56.911	57.503	0.095306					41	15	4	0	0	0	0.40693	1	6354	6354		65.465	9.9612	1	3049400			5940	38149	3656	3671	7549	7549					0.08621431851611305
DAISKSEL	8	Unmodified	_DAISKSEL_					0	0	0		nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	431.72967529296875	2	431.729458	861.444362	-0.64906	-0.00028022	0.54385	0.0002348	-0.1052	-4.5419E-05	431.7295621884361	39.105	0.72012	38.941	38.659	39.379	-0.16458					56	19	4	0	0	0	0.32162	2	3294	3284;3294		108.09	5.4138	1	1896000			5941	18243	3657	3672	7550;7551	7551					0.008097993895830768
DAISKSEL	8	Unmodified	_DAISKSEL_					0	0	0		nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	431.729458	861.444362	-0.35676	-0.00015402	0.080868	3.4913E-05	-0.27589	-0.00011911	431.7293674571577	39.194	0.73548	38.97	38.686	39.422	-0.22311	0.026822	0.00013718	NaN	108.09	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1726100			5942	18243	3657	3672							0.008097993895830768
DAKEDHERTHQ	11	Unmodified	_DAKEDHERTHQ_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.8883361816406	3	455.876245	1364.6069	-0.2931	-0.00013362	-1.9654	-0.00089597	-2.2585	-0.0010296	455.87543476684664	37.488	0.14675	37.425	37.305	37.452	-0.063385					5	3	2	0	0	0	0.024746	1	3043	3043		35.496	0	1	179070			5943	3123	3658	3673	7552	7552					-0.060814689463768445
DAKGRTVSL	9	Unmodified	_DAKGRTVSL_					0	0	0		ENSG00000164294|ENST00000503787|GPX8;ENST00000511617.5_1_5:54456173-54456882:+|nuORF;ENST00000505096.1_1_5:54456173-54456239:+|nuORF	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7691650390625	2	473.769448	945.524344	-0.18491	-8.7603E-05	-0.043228	-2.048E-05	-0.22813	-0.00010808	473.76931038711996	29.99	1.2242	29.746	29.358	30.582	-0.24415					74	28	5	0	0	0	0.056725	2	1888	1888;1901		126.24	9.339	1	4221600			5944	7253	3659	3674	7553;7554	7553					0.049402857834252245
DAKGRTVSL	9	Unmodified	_DAKGRTVSL_					0	0	0		ENSG00000164294|ENST00000503787|GPX8;ENST00000511617.5_1_5:54456173-54456882:+|nuORF;ENST00000505096.1_1_5:54456173-54456239:+|nuORF	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7693786621094	2	473.769448	945.524344	-0.71176	-0.00033721	0.31146	0.00014756	-0.4003	-0.00018965	473.7695081152244	29.851	0.88385	29.678	29.325	30.209	-0.17258					50	20	3	0	0	0	0.12933	3	1876	1843;1864;1876		104.01	21.773	1	4042000			5945	7253	3659	3674	7555;7556;7557	7557					0.049402857834252245
DAKGRTVSL	9	Unmodified	_DAKGRTVSL_					0	0	0		ENSG00000164294|ENST00000503787|GPX8;ENST00000511617.5_1_5:54456173-54456882:+|nuORF;ENST00000505096.1_1_5:54456173-54456239:+|nuORF	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.769287109375	2	473.769448	945.524344	-0.24115	-0.00011425	-0.062067	-2.9406E-05	-0.30322	-0.00014365	473.76932686748216	29.875	1.0524	29.725	29.377	30.429	-0.14952					70	24	5	0	0	0	0.087669	2	1853	1831;1853		114.89	10.148	1	3811000			5946	7253	3659	3674	7558;7559	7559					0.049402857834252245
DAKHYFDWSDY	11	Unmodified	_DAKHYFDWSDY_					0	0	0			REV__ENST00000310806.8_1_14:45673220-45673358:-|nuORF	REV__ENST00000310806.8_1_14:45673220-45673358:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2741394042969	3	482.870208	1445.58879	-1.2516	-0.00060437	2.6823	0.0012952	1.4307	0.00069084	482.87145774728134	29.822	0.4453	29.9	29.646	30.091	0.078346					22	10	3	0	0	0	0.024797	1	1830	1830		25.892	16.246	1	194730	+		5947	30193	3660	3675	7560	7560					-0.11617603921081354
DAKIRIFDL	9	Unmodified	_DAKIRIFDL_					0	0	0		ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENST00000491035.5_1_X:153626749-153628283:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.81640625	2	545.816399	1089.61824	0.054444	2.9716E-05	-1.1009	-0.0006009	-1.0465	-0.00057118	545.8158503193108	67.186	1.6642	66.938	66.65	68.314	-0.24839					130	41	5	0	0	0	0.013337	6	7712	7700;7712;7724;7736;7749;7762		176.44	45.413	1	43259000			5948	5960;15450	3661	3676	7561;7562;7563;7564;7565;7566	7562					0.07702004885709357
DAKIRIFDL	9	Unmodified	_DAKIRIFDL_					0	0	0		ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENST00000491035.5_1_X:153626749-153628283:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.8160400390625	2	545.816399	1089.61824	-0.55171	-0.00030113	-0.40058	-0.00021864	-0.95229	-0.00051977	545.8162202685157	67.143	1.6595	66.919	66.626	68.285	-0.22374					130	42	5	0	0	0	0.013337	6	7731	7699;7707;7719;7731;7743;7756		176.44	45.413	1	32880000			5949	5960;15450	3661	3676	7567;7568;7569;7570;7571;7572	7570					0.07702004885709357
DAKIRIFDL	9	Unmodified	_DAKIRIFDL_					0	0	0		ENSG00000147403|ENST00000369817|RPL10;ENST00000482732.1_1_X:153627802-153628024:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENST00000491035.5_1_X:153626749-153628283:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.8154907226562	2	545.816399	1089.61824	-0.88605	-0.00048362	0.016009	8.7378E-06	-0.87004	-0.00047488	545.8164533022599	67.097	1.4448	66.851	66.618	68.063	-0.24517					127	36	5	0	0	0	0.01896	7	7696	7688;7696;7708;7720;7732;7745;7757		150.36	38.254	1	38881000			5950	5960;15450	3661	3676	7573;7574;7575;7576;7577;7578;7579	7574					0.07702004885709357
DAKKRLSV	8	Unmodified	_DAKKRLSV_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.7825012207031	2	458.782359	915.550165	-0.36637	-0.00016809	0.030373	1.3934E-05	-0.336	-0.00015415	458.78232764808456	21.975	1.0343	21.784	21.468	22.502	-0.19072					54	21	4	0	0	0	0.71063	1	718	718		66.429	3.123	1	1723100			5951	18271	3662	3677	7580	7580					0.08901180025702615
DAKLRLEV	8	Unmodified	_DAKLRLEV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.281982421875	2	472.282192	942.549831	0.083685	3.9523E-05	-0.41918	-0.00019797	-0.33549	-0.00015845	472.2818940667008	47.238	1.0311	47.142	46.825	47.856	-0.096649					65	27	4	0	0	0	0.9184	1	4618	4618		49.536	6.6718	1	4212600			5952	2185;2661;4670;4704	3663	3678	7581	7581					0.0762576030585933
DAKPRGLTK	9	Unmodified	_DAKPRGLTK_					0	0	0		ENST00000508478.1_1_5:175956522-175957037:-|nuORF;ENST00000515051.1_1_5:175956111-175956726:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44	ENST00000508478.1_1_5:175956522-175957037:-|nuORF	ENST00000508478.1_1_5:175956522-175957037:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7667541503906	2	493.293091	984.571629	0.53881	0.00026579	-0.50333	-0.00024829	0.035475	1.75E-05	493.29272705782745	41.038	0.32568	40.915	40.725	41.051	-0.12317					14	8	2	0	0	0	0.024405	1	3616	3616		14.865	0	1	214740			5953	5855	3664	3679	7582	7582					0.07872565054412917
DAKQKWLL	8	Unmodified	_DAKQKWLL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29327392578125	2	501.292559	1000.57057	0.14172	7.1045E-05	-0.39982	-0.00020043	-0.2581	-0.00012938	501.29214621519253	50.705	1.8788	50.429	49.588	51.467	-0.27643					114	49	4	0	0	0	0.42327	2	5145	5145;5158		94.006	11.701	1	13198000			5954	456	3665	3680	7583;7584	7583					0.07030350685522535
DAKQKWLL	8	Unmodified	_DAKQKWLL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2930603027344	2	501.292559	1000.57057	-0.031846	-1.5964E-05	-0.12365	-6.1983E-05	-0.15549	-7.7947E-05	501.29229110283705	50.556	1.7659	50.375	49.495	51.261	-0.18071					116	46	4	0	0	0	0.25873	2	5117	5117;5139		129.68	21.595	1	13409000			5955	456	3665	3680	7585;7586	7585					0.07030350685522535
DAKQRLSAA	9	Unmodified	_DAKQRLSAA_					0	0	0		nc|ENSG00000099875|Q9HBH9-2|MKNK2;ENSG00000099875|ENST00000250896|MKNK2;ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1	nc|ENSG00000099875|Q9HBH9-2|MKNK2	nc|ENSG00000099875|Q9HBH9-2|MKNK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2671813964844	2	480.267073	958.519593	0.61775	0.00029669	-0.82813	-0.00039773	-0.21038	-0.00010104	480.26655713632834	23.822	0.60417	23.62	23.318	23.923	-0.20193					29	13	3	0	0	0	0.57016	1	992	992		54.722	12.326	1	659590			5956	2092	3666	3681	7587	7587					0.03867401640661683
DAKQRLSAA	9	Unmodified	_DAKQRLSAA_					0	0	0		nc|ENSG00000099875|Q9HBH9-2|MKNK2;ENSG00000099875|ENST00000250896|MKNK2;ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1	nc|ENSG00000099875|Q9HBH9-2|MKNK2	nc|ENSG00000099875|Q9HBH9-2|MKNK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.267073	958.519593	-0.34775	-0.00016701	0.39292	0.00018871	0.045175	2.1696E-05	480.2670747787069	23.68	0.4998	23.501	23.281	23.78	-0.17989	-0.059948	0.00079983	NaN	54.722	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691080			5957	2092	3666	3681							0.03867401640661683
DAKRGFLD	8	Unmodified	_DAKRGFLD_					0	0	0		nc|ENSG00000005469|Q9UKG9-3|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2605285644531	2	461.243067	920.47158	0.75986	0.00035048	-0.32387	-0.00014938	0.43599	0.0002011	461.2427727613785	37.384	0.98457	37.384	36.648	37.632	0					41	25	3	0	0	0	0.027866	1	3081	3081		27.882	3.6795	1	476060			5958	18029	3667	3682	7588	7588					0.00816327720622212
DALGKFSLTLI	11	Unmodified	_DALGKFSLTLI_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428955078125	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0465	1	11282	11282		26.063	2.5407	1	17343000			5959	3548	3668	3683	7589	7589					0.09415427371436635
DALIVGTL	8	Unmodified	_DALIVGTL_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000294997.10_1_1:207888693-207911758:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.25543212890625	2	401.239461	800.46437	0.26095	0.0001047	-0.57461	-0.00023056	-0.31367	-0.00012586	401.2393815024638	47.867	0.44782	47.714	47.476	47.924	-0.15301					26	13	3	0	0	0	0.027866	1	4835	4835		18.324	0	1	553730			5960	10274	3669	3684	7590	7590					0.05615595120195849
DALLGHQL	8	Unmodified	_DALLGHQL_					0	0	0			REV__nc|ENSG00000107798|P38571-2|LIPA	REV__nc|ENSG00000107798|P38571-2|LIPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.25372314453125	2	433.74016	865.465767	-0.74226	-0.00032195	1.3592	0.00058956	0.61699	0.00026761	433.7407668846471	28.612	0.50108	28.612	28.318	28.82	0					19	11	2	0	0	0	0.027866	1	1706	1706		68.485	16.186	1	72172	+		5961	21687	3670	3685	7591	7591					0.027652292089555885
DALQTLIMV	9	Unmodified	_DALQTLIMV_					0	0	0		nc|ENSG00000154025|A0PJK1-5|SLC5A10;ENSG00000154025|ENST00000395645|SLC5A10;nc|ENSG00000154025|A0PJK1-4|SLC5A10	nc|ENSG00000154025|A0PJK1-5|SLC5A10	nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2782287597656	2	502.27826	1002.54197	0.1611	8.0916E-05	0.3208	0.00016113	0.48189	0.00024204	502.27802723323526	79.817	1.166	79.598	78.791	79.957	-0.21923					59	27	4	0	0	0	0.31037	1	9564	9564		74.255	10.048	1	1047400			5962	6376	3671	3686	7592	7592					0.040798649940711584
DALQYQEHL	9	Unmodified	_DALQYQEHL_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.8448486328125	2	558.769645	1115.52474	-0.20146	-0.00011257	0.084254	4.7079E-05	-0.1172	-6.5489E-05	558.7697024777141	54.145	0.52104	54.145	53.872	54.393	0					20	14	2	0	0	0	0.024405	1	5931	5931		44.117	9.9443	1	107050			5963	4886	3672	3687	7593	7593					-0.028403392873769917
DALRLYLI	8	Unmodified	_DALRLYLI_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2685852050781	2	488.794935	975.575317	0.51504	0.00025175	0.032333	1.5804E-05	0.54738	0.00026756	488.79525994531053	72.22	0.51773	71.939	71.583	72.1	-0.28124					16	13	2	0	0	0	0.027866	1	8765	8765		42.474	3.6683	1	158530			5964	9849	3673	3688	7594	7594					0.08655234828268021
DALSESSLY	9	Unmodified	_DALSESSLY_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant;TARBP1|p.L422F|1|0.18|ENSG00000059588|chr1:234465691-234465691|T/A|missense_variant	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2015686035156	2	492.729655	983.444756	-0.48155	-0.00023727	1.3408	0.00066065	0.85924	0.00042338	492.7303543128765	42.52	0.76757	42.397	42.076	42.844	-0.12299					45	19	4	0	0	0	0.024294	1	3790	3790		65.803	19.831	1	2077800			5965	1224	3674	3689	7595	7595					-0.04762825681234517
DALSLQFEPVL	11	Unmodified	_DALSLQFEPVL_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.87933349609375	3	411.223811	1230.6496	0.16306	6.7054E-05	1.0009	0.00041159	1.1639	0.00047864	411.22397584145114	31.884	0.86791	31.648	31.262	32.13	-0.23667					49	20	4	0	0	0	0.024751	1	2123	2123		48.602	1.3739	1	177140			5966	3857	3675	3690	7596	7596					0.043505331291498806
DALTFAEV	8	Unmodified	_DALTFAEV_					0	0	0		nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3;PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	nc|ENSG00000184363|Q9Y446-2|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2485656738281	2	433.218726	864.422899	0.44371	0.00019222	4.2881	0.0018577	4.7318	0.0020499	433.218570877246	32.653	0.42336	32.716	32.616	33.039	0.062885					18	10	3	0	0	0	0.027866	1	2270	2270		31.955	0	1	86047			5967	9330	3676	3691	7597	7597					-0.014735856391439484
DALVLRLL	8	Unmodified	_DALVLRLL_					0	0	0			REV__ENST00000307630.4_1_7:75957822-75957921:-|nuORF	REV__ENST00000307630.4_1_7:75957822-75957921:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2587890625	2	456.797478	911.580402	-0.33662	-0.00015377	0.51928	0.0002372	0.18266	8.344E-05	456.7975569581669	28.356	0.49953	28.352	28.04	28.54	-0.0042019					17	11	2	0	0	0	0.027866	1	1598	1598		31.955	7.7521	1	80213	+		5968	30141	3677	3692	7598	7598					0.12107538690884212
DALVVKNL	8	Unmodified	_DALVVKNL_					0	0	0			REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.8913879394531	2	436.26601	870.517468	-0.49679	-0.00021673	-1.1001	-0.00047994	-1.5969	-0.00069667	436.26532960113445	65.133	0.36483	64.899	64.728	65.092	-0.2345					10	8	2	0	0	0	0.027866	1	7454	7454		45.952	10.334	1	86683	+		5969	24180	3678	3693	7599	7599					0.07702972902859528
DALVVKNL	8	Unmodified	_DALVVKNL_					0	0	0			REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.26601	870.517468	-0.71855	-0.00031348	0.098382	4.2921E-05	-0.62017	-0.00027056	436.2657626660053	64.83	0.77502	64.83	64.617	65.392	0	-0.011774	0.00010836	NaN	45.952	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402140	+		5970	24180	3678	3693							0.07702972902859528
DALVVKNL	8	Unmodified	_DALVVKNL_					0	0	0			REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.26601	870.517468	-1.1031	-0.00048124	0.3703	0.00016155	-0.73279	-0.00031969	436.26597884998074	65.08	0.79353	64.817	64.613	65.406	-0.2626	-0.024751	0.00034562	NaN	45.952	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518510	+		5971	24180	3678	3693							0.07702972902859528
DALVVKNL	8	Unmodified	_DALVVKNL_					0	0	0			REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	REV__PLK4|p.E229V|1|0.08|ENSG00000142731|chr4:127886056-127886056|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	436.26601	870.517468	-0.21684	-9.46E-05	-0.1415	-6.1733E-05	-0.35834	-0.00015633	436.2657560349133	64.784	0.68708	64.822	64.634	65.321	0.037384	-0.020245	-0.00010094	NaN	45.952	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495150	+		5972	24180	3678	3693							0.07702972902859528
DAMKGSRDD	9	Unmodified	_DAMKGSRDD_					0	0	0		nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000264230|Q5VT79-2|ANXA8L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.71685791015625	2	497.716556	993.418558	1.1373	0.00056605	-0.5892	-0.00029325	0.5481	0.0002728	497.7161923016036	36.74	1.5221	36.53	35.832	37.354	-0.2092					104	38	5	0	0	0	0.72494	3	2909	2872;2884;2909		44.377	2.0937	1	2744400			5973	18785	3679	3694	7600;7601;7602	7602					-0.07841418124360189
DAMVATFFDI	10	Unmodified	_DAMVATFFDI_					0	0	0		ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	ENSG00000129636|ENST00000320640|ITFG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.3140258789062	2	565.26535	1128.51615	-1.1128	-0.00062902	-1.9988	-0.0011298	-3.1116	-0.0017589	565.2637372423652	36.456	0.27448	36.494	36.374	36.648	0.038044					13	7	2	0	0	0	0.03519	1	2860	2860		27.882	3.6795	1	61334			5974	4360	3680	3695	7603	7603					-0.04297029248209583
DAMVQGKVT	9	Unmodified	_DAMVQGKVT_					0	0	0		ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2698059082031	2	474.744585	947.474617	0.51645	0.00024518	-1.2021	-0.00057069	-0.68566	-0.00032551	474.744051540899	25.537	0.24744	25.617	25.459	25.706	0.08009					7	5	2	0	0	0	0.023239	1	1153	1153		74.255	0	1	31805			5975	7187	3681	3696	7604	7604					-0.001221652168737819
DANDAGGKHS	10	Unmodified	_DANDAGGKHS_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.2161560058594	2	486.212495	970.410437	0.42603	0.00020714	4.0764	0.001982	4.5024	0.0021891	486.21443569005066	101.78	2.0865	101.61	100.71	102.8	-0.17178					129	49	3	0	0	0	1.0616	1	12717	12717		37.812	0.65241	1	202350			5976	1599	3682	3697	7605	7605					-0.07595229049468344
DANNEELIS	9	Unmodified	_DANNEELIS_					0	0	0			REV__ENST00000425688.1_1_2:166651406-166657756:+|nuORF	REV__ENST00000425688.1_1_2:166651406-166657756:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.80303955078125	2	502.730186	1003.44582	0.20986	0.0001055	-2.6641	-0.0013393	-2.4542	-0.0012338	502.7283501226478	57.74	0.34069	57.565	57.268	57.608	-0.1749					11	8	2	0	0	0	0.024427	1	6443	6443		42.396	1.618	1	114990	+		5977	32259	3683	3698	7606	7606					-0.05576611312324076
DAPAHHLF	8	Unmodified	_DAPAHHLF_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.2244567871094	2	454.224677	906.434801	-0.71082	-0.00032287	0.77946	0.00035405	0.068634	3.1175E-05	454.224885790071	38.379	0.84072	38.2	37.939	38.78	-0.17929					71	23	4	0	0	0	0.28104	4	3157	3157;3168;3181;3192		120.06	33.123	1	6017400			5978	10397;4886	3684	3699	7607;7608;7609;7610	7607					-0.022159241052804646
DAPAHHLF	8	Unmodified	_DAPAHHLF_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.2245178222656	2	454.224677	906.434801	-0.76199	-0.00034611	0.76158	0.00034593	-0.00040245	-1.828E-07	454.2248890536371	38.417	0.89317	38.196	37.898	38.791	-0.22149					69	24	4	0	0	0	0.30656	4	3175	3163;3175;3185;3195		110.17	20.861	1	5674500			5979	10397;4886	3684	3699	7611;7612;7613;7614	7612					-0.022159241052804646
DAPAHHLF	8	Unmodified	_DAPAHHLF_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.2248840332031	2	454.224677	906.434801	-0.33957	-0.00015424	0.38774	0.00017612	0.048174	2.1882E-05	454.2246913682329	38.452	0.99528	38.234	37.957	38.953	-0.21849					71	27	4	0	0	0	0.28104	4	3151	3151;3161;3173;3184		120.06	33.123	1	5202300			5980	10397;4886	3684	3699	7615;7616;7617;7618	7615					-0.022159241052804646
DAPDTYHYVVS	11	Unmodified	_DAPDTYHYVVS_					0	0	0		ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.85931396484375	3	422.85942	1265.55643	-0.31411	-0.00013282	-0.21267	-8.9928E-05	-0.52677	-0.00022275	422.85926971278917	43.054	0.6486	42.828	42.521	43.17	-0.22597					52	16	5	0	0	0	1.0022	1	3901	3901		36.318	4.6834	1	1157600			5981	10528	3685	3700	7619	7619					-0.0657239132410723
DAPDTYHYVVS	11	Unmodified	_DAPDTYHYVVS_					0	0	0		ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	422.85942	1265.55643	0.058989	2.4944E-05	-0.65031	-0.00027499	-0.59132	-0.00025004	422.8590819255295	42.804	0.64441	42.692	42.464	43.109	-0.11253	-0.067314	-0.00032845	NaN	36.318	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1058400			5982	10528	3685	3700							-0.0657239132410723
DAPDTYHYVVS	11	Unmodified	_DAPDTYHYVVS_					0	0	0		ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	422.85942	1265.55643	-0.13812	-5.8405E-05	-0.40587	-0.00017163	-0.54399	-0.00023003	422.8592253733245	42.995	0.61134	42.757	42.525	43.136	-0.23736	-0.0018616	-1.8362E-05	NaN	36.318	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124800			5983	10528	3685	3700							-0.0657239132410723
DAPEAVTVV	9	Unmodified	_DAPEAVTVV_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.74725341796875	2	450.737283	899.460012	-0.51405	-0.0002317	-0.58899	-0.00026548	-1.103	-0.00049718	450.73628368558525	31.119	0.38172	31.119	31.047	31.428	0					10	8	2	0	0	0	0.024457	1	2071	2071		29.15	6.1071	1	33805			5984	5893	3686	3701	7620	7620					0.006260859066173907
DAPGPREALT	10	Unmodified	_DAPGPREALT_					0	0	0		ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.8055419921875	2	513.764363	1025.51417	-1.0636	-0.00054642	-2.2298	-0.0011456	-3.2934	-0.001692	513.7630762077926	80.315	0.75528	80.163	79.843	80.598	-0.15169					36	17	3	0	0	0	0.03519	1	9961	9961		40.778	15.204	1	341210			5985	9924	3687	3702	7621	7621					0.0024367805817746557
DAPIEEFM	8	Unmodified	_DAPIEEFM_					0	0	0		NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant;ENSG00000173572|ENST00000342929|NLRP13	NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	NLRP13|p.F639Sfs*38|1|0.04|ENSG00000173572|chr19:55911895-55911901|CAGTGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7801513671875	2	476.210043	950.405534	0.16271	7.7482E-05	1.4545	0.00069264	1.6172	0.00077012	476.2106282030273	33.759	0.42981	33.755	33.599	34.029	-0.0045624					18	10	2	0	0	0	0.027866	1	2464	2464		26.796	8.4717	1	189470			5986	8385	3688	3703	7622	7622					-0.07165249236436466
DAPIVTEGED	10	Unmodified	_DAPIVTEGED_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8009643554688	2	523.237844	1044.46113	0.82567	0.00043202	4.2308	0.0022137	5.0564	0.0026457	523.2398775625451	20.533	1.2306	20.602	20.021	21.251	0.068901					30	24	2	0	0	0	0.03519	1	460	460		49.442	5.3247	1	29527	+		5987	36895	3689	3704	7623	7623					-0.059317445151236825
DAPRAASIVL	10	Unmodified	_DAPRAASIVL_					0	0	0		ENSG00000091428|ENST00000397081|RAPGEF4;nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;RAPGEF4|p.R439G|1|0.2|ENSG00000091428|chr2:172988780-172988780|C/G|missense_variant	ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.79278564453125	2	506.792924	1011.57129	-0.35557	-0.0001802	-1.1749	-0.00059544	-1.5305	-0.00077565	506.79245433045855	44.155	1.3845	44.192	43.888	45.272	0.036903					127	39	6	0	0	0	0.55353	1	4138	4138		82.241	2.7895	1	117970000			5988	1960	3690	3705	7624	7624					0.06597145334569632
DAPSAPGHAPH	11	Unmodified	_DAPSAPGHAPH_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7479858398438	2	528.746505	1055.47846	0.22244	0.00011761	3.2152	0.0017	3.4376	0.0018176	528.7479914888474	85.049	3.2624	84.846	83.951	87.213	-0.20329					161	76	5	0	0	0	0.84811	1	10264	10264		54.776	0	1	1961800			5989	2656	3691	3706	7625	7625					-0.04706359398801396
DAPSLTDPLY	10	Unmodified	_DAPSLTDPLY_					0	0	0			REV__ENSG00000168924|ENST00000302787|LETM1	REV__ENSG00000168924|ENST00000302787|LETM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7877807617188	2	546.266404	1090.51826	-0.54075	-0.00029539	-4.2699	-0.0023325	-4.8107	-0.0026279	546.7653856558746	29.795	0.1665	29.646	29.501	29.668	-0.14952					5	3	2	0	0	0	0.03519	1	1816	1816		34.173	21.213	1	38177	+		5990	26303	3692	3707	7626	7626					-0.023382772387549267
DAPTLTPQQS	10	Unmodified	_DAPTLTPQQS_					0	0	0		ENST00000369869.1_1_1:110032306-110035219:+|nuORF;ENST00000497545.5_1_1:110032306-110034363:+|nuORF	ENST00000369869.1_1_1:110032306-110035219:+|nuORF	ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2616577148438	2	529.261653	1056.50875	0.22631	0.00011978	-1.1712	-0.00061985	-0.94485	-0.00050007	529.263333795198	76.939	0.75498	76.671	76.211	76.966	-0.26807					32	17	3	0	0	0	0.03519	1	9172	9172		23.523	1.8204	1	525720			5991	12942	3693	3708	7627	7627					-0.01724045524269968
DAQKHDVEVL	10	Unmodified	_DAQKHDVEVL_					0	0	0		ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.279541015625	2	577.296027	1152.5775	-1.4513	-0.00083786	-1.081	-0.00062404	-2.5323	-0.0014619	577.295459483219	40.787	1.5835	40.557	39.811	41.394	-0.23029					66	41	2	0	0	0	0.03519	1	3450	3450		25.574	0	1	443620			5992	4279	3694	3709	7628	7628					0.007316187754213388
DAQKIKALF	9	Unmodified	_DAQKIKALF_					0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2960205078125	2	517.305667	1032.59678	-0.21311	-0.00011024	0.782	0.00040453	0.56889	0.00029429	517.3058504977093	78.554	0.64537	78.3	77.955	78.6	-0.25471					25	14	3	0	0	0	0.024405	1	9370	9370		35.618	12.576	1	200250	+		5993	22452	3695	3710	7629	7629					0.08178619856971636
DAQKRHRWFYV	11	Unmodified	_DAQKRHRWFYV_					0	0	0			REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7632751464844	3	502.596865	1504.76877	-0.37546	-0.00018871	-2.6097	-0.0013116	-2.9852	-0.0015003	502.59544967772	35.434	0.39492	35.478	35.305	35.699	0.04406					12	9	2	0	0	0	0.024856	1	2696	2696		13.508	5.1007	1	50139	+		5994	31713	3696	3711	7630	7630					0.03657164597211704
DAQNANSIY	9	Unmodified	_DAQNANSIY_					0	0	0			REV__ENSG00000186340|ENST00000617924|THBS2	REV__ENSG00000186340|ENST00000617924|THBS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.2557067871094	2	498.225071	994.435589	-0.85725	-0.0004271	1.9945	0.0009937	1.1372	0.00056659	498.22599733039493	61.812	0.82129	61.634	61.37	62.191	-0.17781					30	20	2	0	0	0	0.024405	1	6990	6990		44.117	7.0883	1	362820	+		5995	27849	3697	3712	7631	7631					-0.0618517424690026
DAQPMMPTPN	10	Unmodified	_DAQPMMPTPN_					0	0	0		ENST00000532478.5_1_11:47196639-47197406:-|nuORF	ENST00000532478.5_1_11:47196639-47197406:-|nuORF	ENST00000532478.5_1_11:47196639-47197406:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2401123046875	2	551.238809	1100.46307	0.44466	0.00024511	2.5499	0.0014056	2.9945	0.0016507	551.2401594172857	83.185	0.76738	83.094	82.701	83.469	-0.090454					42	17	4	0	0	0	1.0122	1	10373	10373		44.377	0	1	855410			5996	16290	3698	3713	7632	7632					-0.08314730302527096
DARKKVQQV	9	Unmodified	_DARKKVQQV_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000472883.1_1_9:123290187-123301393:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3154296875	2	536.317097	1070.61964	-0.05022	-2.6934E-05	-0.46498	-0.00024938	-0.5152	-0.00027631	536.3167836567333	19.631	0.59034	19.471	19.233	19.823	-0.16079					19	11	2	0	0	0	0.42604	1	444	444		64.207	0	1	356710			5997	5056	3699	3714	7633	7633					0.08715638974467765
DARKKVQQV	9	Unmodified	_DARKKVQQV_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000472883.1_1_9:123290187-123301393:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.317097	1070.61964	0.53811	0.0002886	-1.1898	-0.00063809	-0.65165	-0.00034949	536.3164242356416	19.746	0.39637	19.546	19.305	19.701	-0.2001	0.037851	-0.00060987	NaN	64.207	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137550			5998	5056	3699	3714							0.08715638974467765
DARPQQLA	8	Unmodified	_DARPQQLA_					0	0	0		ENST00000559009.1_1_15:102312406-102316387:-|nuORF	ENST00000559009.1_1_15:102312406-102316387:-|nuORF	ENST00000559009.1_1_15:102312406-102316387:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.73992919921875	2	449.740691	897.466829	-0.88915	-0.00039989	1.1309	0.0005086	0.24172	0.00010871	449.7410330188534	40.256	0.68174	40.026	39.697	40.378	-0.23021					40	17	3	0	0	0	0.845	1	3474	3474		55.504	4.1688	1	2239500			5999	16768	3700	3715	7634	7634					0.013994435778386105
DARQKIGL	8	Unmodified	_DARQKIGL_					0	0	0		ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.766845703125	2	450.766709	899.518865	-0.45825	-0.00020656	0.023965	1.0803E-05	-0.43429	-0.00019576	450.76670321802317	35.271	0.86373	35.058	34.685	35.548	-0.21246					60	21	4	0	0	0	0.4075	1	2667	2667		96.19	16.739	1	7994500			6000	2155	3701	3716	7635	7635					0.06508606991610577
DARVVGVIL	9	Unmodified	_DARVVGVIL_					0	0	0			REV__ENSG00000181803|ENST00000320704|OR6S1	REV__ENSG00000181803|ENST00000320704|OR6S1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.29278564453125	2	471.292559	940.570566	0.3653	0.00017216	-0.44603	-0.00021021	-0.080726	-3.8046E-05	471.29235913514	50.39	1.4067	50.238	49.817	51.224	-0.1512					111	40	4	0	0	0	0.62163	1	5263	5263		51.335	3.6781	1	27149000	+		6001	27429	3702	3717	7636	7636					0.09790350685523208
DASIERLWL	9	Unmodified	_DASIERLWL_					0	0	0			REV__ENST00000450241.6_1_19:40596718-40596784:-|nuORF	REV__ENST00000450241.6_1_19:40596718-40596784:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.7982177734375	2	551.798206	1101.58186	-0.47777	-0.00026363	-0.20745	-0.00011447	-0.68522	-0.0003781	551.798036535745	55.848	1.0235	55.692	55.26	56.284	-0.15601					80	27	4	0	0	0	0.29158	1	6155	6155		76.774	2.6091	1	3124900	+		6002	32695	3703	3718	7637	7637					0.03513127989003806
DASIGKRRG	9	Unmodified	_DASIGKRRG_					0	0	0			REV__ENST00000433008.1_1_1:203256939-203257165:+|nuORF	REV__ENST00000433008.1_1_1:203256939-203257165:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7358703613281	2	480.27269	958.530826	0.18138	8.7112E-05	3.4721	0.0016676	3.6535	0.0017547	480.2739419478085	60.459	0.6469	60.253	60.011	60.658	-0.20599					32	15	3	0	0	0	0.024263	1	6695	6695		42.396	0	1	155710	+		6003	32391	3704	3719	7638	7638					0.049902237348078415
DASISTVGK	9	Unmodified	_DASISTVGK_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.2351379394531	2	439.234907	876.455261	0.3236	0.00014214	1.2079	0.00053054	1.5315	0.00067267	439.2352790276017	25.518	0.67179	25.347	25.118	25.79	-0.17151					41	15	5	0	0	0	0.67687	1	1188	1188		47.657	5.2612	1	875920	+		6004	25991	3705	3720	7639	7639					0.012092017638678954
DASISTVGK	9	Unmodified	_DASISTVGK_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	439.234907	876.455261	-0.54789	-0.00024065	2.1255	0.0009336	1.5776	0.00069294	439.2357344773369	25.333	0.43409	25.333	25.135	25.569	0	-0.062411	0.00025026	NaN	47.657	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79600	+		6005	25991	3705	3720							0.012092017638678954
DASISTVGK	9	Unmodified	_DASISTVGK_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	439.234907	876.455261	-0.8209	-0.00036057	2.5405	0.0011159	1.7196	0.0007553	439.23579197764036	25.723	0.65878	25.496	25.231	25.89	-0.22683	0.10112	0.00061479	NaN	47.657	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559870	+		6006	25991	3705	3720							0.012092017638678954
DASISTVGK	9	Unmodified	_DASISTVGK_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	439.234907	876.455261	-0.27481	-0.00012071	1.99	0.0008741	1.7152	0.00075339	439.2355521862388	25.576	0.71518	25.405	25.122	25.837	-0.17078	0.009696	0.00013125	NaN	47.657	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	699680	+		6007	25991	3705	3720							0.012092017638678954
DASISTVGK	9	Unmodified	_DASISTVGK_					0	0	0			REV__ENSG00000166224|ENST00000373202|SGPL1	REV__ENSG00000166224|ENST00000373202|SGPL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	439.234907	876.455261	0.3236	0.00014214	1.2079	0.00053054	1.5315	0.00067267	439.2352790276017	25.518	0.67179	25.347	25.118	25.79	-0.17151	-0.048406	-0.00055587	NaN	47.657	41	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	875920	+		6008	25991	3705	3720							0.012092017638678954
DASLVSSRPS	10	Unmodified	_DASLVSSRPS_					0	0	0		ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	ENSG00000205927|ENST00000382357|OLIG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2850036621094	2	509.76182	1017.50909	-0.48126	-0.00024533	-2.4431	-0.0012454	-2.9244	-0.0014907	509.7602861174462	56.594	0.7323	56.692	56.321	57.053	0.097897					43	20	3	0	0	0	0.03519	1	6290	6290		58.23	2.7257	1	892220			6009	10456	3706	3721	7640	7640					0.0010337419557799876
DASVRDRI	8	Unmodified	_DASVRDRI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.75341796875	2	466.251423	930.488293	-1.4722	-0.00068642	0.5228	0.00024376	-0.94941	-0.00044266	466.2521199455004	29.622	1.244	29.622	29.223	30.467	0					58	30	4	0	0	0	0.027866	1	1865	1865		60.972	0	1	5065600			6010	6479	3707	3722	7641	7641					0.02026828606562958
DATYHTMSSV	10	Unmodified	_DATYHTMSSV_					0	0	0		ENSG00000091010|ENST00000646991|POU4F3	ENSG00000091010|ENST00000646991|POU4F3	ENSG00000091010|ENST00000646991|POU4F3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.8056030273438	2	556.239864	1110.46517	-0.27466	-0.00015278	-2.1961	-0.0012216	-2.4708	-0.0013743	556.23972345393	33.382	0.52076	33.151	32.835	33.356	-0.23107					34	12	4	0	0	0	0.03519	1	2366	2366		32.812	3.6629	1	253240			6011	1948	3708	3723	7642	7642					-0.0856397829306843
DAVALNLLI	9	Unmodified	_DAVALNLLI_					0	0	0			REV__ENSG00000163914|ENST00000296271|RHO	REV__ENSG00000163914|ENST00000296271|RHO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2824401855469	2	471.286943	940.559333	0.48856	0.00023025	0.54758	0.00025807	1.0361	0.00048832	471.287186971882	51.117	0.37753	50.841	50.589	50.967	-0.27643					13	9	2	0	0	0	0.024457	1	5185	5185		29.15	9.1528	1	626760	+		6012	25658	3709	3724	7643	7643					0.08667528591399787
DAVIWRGPK	9	Unmodified	_DAVIWRGPK_					0	0	0		ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7680053710938	2	521.295633	1040.57671	0.17396	9.0683E-05	0.16166	8.4274E-05	0.33562	0.00017496	521.7972739026142	55.568	0.85285	55.568	55.182	56.035	0					29	23	2	0	0	0	0.023817	1	6170	6170		42.396	1.618	1	202710			6013	2490	3710	3725	7644	7644					0.0580486891703913
DAVIWRGPK	9	Unmodified	_DAVIWRGPK_					0	0	0		ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.295633	1040.57671	0.28995	0.00015115	1.0182	0.00053077	1.3081	0.00068192	521.2957292769989	55.948	0.35787	55.732	55.562	55.92	-0.21607	0.10266	2.6776E-05	NaN	42.396	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149750			6014	2490	3710	3725							0.0580486891703913
DAVIWRGPK	9	Unmodified	_DAVIWRGPK_					0	0	0		ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	ENST00000571790.5_1_16:10837720-10857402:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.295633	1040.57671	-1.1178	-0.0005827	1.8417	0.00096005	0.72386	0.00037735	521.2963780594408	56.006	0.39816	55.791	55.489	55.887	-0.21551	0.16111	0.00088534	NaN	42.396	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101940			6015	2490	3710	3725							0.0580486891703913
DAVPPAPAADD	11	Unmodified	_DAVPPAPAADD_					0	0	0			REV__nc|ENSG00000121057|Q92667-2|AKAP1	REV__nc|ENSG00000121057|Q92667-2|AKAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2633056640625	2	519.740554	1037.46655	-0.01301	-6.7621E-06	0.79287	0.00041209	0.77986	0.00040533	519.7406701404028	57.214	0.69468	56.989	56.7	57.395	-0.2248					40	18	3	0	0	0	0.024736	1	6274	6274		29.17	10.067	1	1122700	+		6016	19096	3711	3726	7645	7645					-0.050680209326628756
DAVQTPQLY	9	Unmodified	_DAVQTPQLY_					0	0	0		nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	nc|ENSG00000143434|Q9H3T2-2|SEMA6C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2723999023438	2	517.761289	1033.50803	0.77026	0.00039881	1.8141	0.00093925	2.5843	0.0013381	517.7616785245572	71.303	0.70723	71.097	70.79	71.497	-0.20614					32	16	3	0	0	0	0.024506	1	8291	8291		23.042	2.5607	1	408060			6017	5649	3712	3727	7646	7646					-0.007388401733123828
DAVTITPNN	9	Unmodified	_DAVTITPNN_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.77197265625	2	472.737814	943.461075	-0.73748	-0.00034863	1.4916	0.00070515	0.75414	0.00035651	472.73856023322236	38.864	0.49047	38.891	38.612	39.102	0.027275					15	12	2	0	0	0	0.024319	1	3229	3229		31.53	0	1	121530	+		6018	23907	3713	3728	7647	7647					-0.01291699724481532
DAVVKHVL	8	Unmodified	_DAVVKHVL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	440.7659912109375	2	440.766178	879.517802	-0.11729	-5.1696E-05	-0.033949	-1.4964E-05	-0.15124	-6.666E-05	440.7662157400356	37.287	1.8907	37.094	36.774	38.664	-0.193					133	51	5	0	0	0	0.24207	6	3017	2957;2968;2980;3005;3017;3030		133.47	24.978	1	40815000			6019	3916	3714	3729	7648;7649;7650;7651;7652;7653	7652					0.07322392622711504
DAVVKHVL	8	Unmodified	_DAVVKHVL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	440.7662048339844	2	440.766178	879.517802	-1.1125	-0.00049033	0.91008	0.00040113	-0.20238	-8.9201E-05	440.76660994667543	37.354	2.1232	37.134	36.807	38.93	-0.2195					151	57	5	0	0	0	0.27193	6	3003	2969;2979;2991;3003;3015;3028		123.99	20.182	1	40016000			6020	3916	3714	3729	7654;7655;7656;7657;7658;7659	7657					0.07322392622711504
DAVVKHVL	8	Unmodified	_DAVVKHVL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.7664794921875	2	440.766178	879.517802	0.12774	5.6304E-05	-0.37026	-0.0001632	-0.24252	-0.0001069	440.76604915168593	37.318	1.9877	37.109	36.765	38.753	-0.2092					135	53	5	0	0	0	0.27193	4	2961	2961;2997;3009;3024		123.99	23.95	1	33875000			6021	3916	3714	3729	7660;7661;7662;7663	7660					0.07322392622711504
DAVWNELAY	9	Unmodified	_DAVWNELAY_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.27685546875	2	540.753464	1079.49238	2.9774	0.00161	2.9152	0.0015764	5.8926	0.0031864	540.7548811396574	16.87	0.44917	16.87	16.752	17.201	0					13	11	2	0	0	0	0.024541	1	99	99		21.96	5.4867	1	38711			6022	1092	3715	3730	7664	7664					-0.044191266903681026
DAWRRRALR	9	Unmodified	_DAWRRRALR_					0	0	0		nc|ENSG00000165730|Q6ZVD7-3|STOX1;nc|ENSG00000165730|Q6ZVD7-2|STOX1;ENSG00000165730|ENST00000298596|STOX1	nc|ENSG00000165730|Q6ZVD7-3|STOX1	nc|ENSG00000165730|Q6ZVD7-3|STOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5146789550781	3	400.567129	1198.67956	0.51681	0.00020702	-1.4015	-0.00056139	-0.88466	-0.00035437	400.56654478363794	24.609	0.98345	24.394	24.089	25.072	-0.21511					37	22	2	0	0	0	0.02438	1	1098	1098		46.457	0	1	414700			6023	7459	3716	3731	7665	7665					0.08816374428351992
DAWVHHEL	8	Unmodified	_DAWVHHEL_					0	0	0		chr1:34755195-34757310|491|22.09|0.77|4.85|+|2|GJB5,None|1;ENST00000338513.1_1_1:35220669-35222948:+|nuORF	chr1:34755195-34757310|491|22.09|0.77|4.85|+|2|GJB5,None|1	chr1:34755195-34757310|491|22.09|0.77|4.85|+|2|GJB5,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7407531738281	2	503.740691	1005.46683	-0.42278	-0.00021297	0.18187	9.1614E-05	-0.24091	-0.00012136	503.7406315400169	42.779	0.76031	42.542	42.229	42.989	-0.23736					52	19	4	0	0	0	0.50239	1	3871	3871		85.359	11.385	1	2558400			6024	291	3717	3732	7666	7666					-0.03568556422146685
DAWVHHEL	8	Unmodified	_DAWVHHEL_					0	0	0		chr1:34755195-34757310|491|22.09|0.77|4.85|+|2|GJB5,None|1;ENST00000338513.1_1_1:35220669-35222948:+|nuORF	chr1:34755195-34757310|491|22.09|0.77|4.85|+|2|GJB5,None|1	chr1:34755195-34757310|491|22.09|0.77|4.85|+|2|GJB5,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7406921386719	2	503.740691	1005.46683	-0.75011	-0.00037786	0.46958	0.00023655	-0.28053	-0.00014132	503.7407634415623	42.815	0.80161	42.589	42.26	43.061	-0.22597					52	20	4	0	0	0	0.6536	1	3871	3871		71.296	17.944	1	2210600			6025	291	3717	3732	7667	7667					-0.03568556422146685
DAYQKRLL	8	Unmodified	_DAYQKRLL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7872314453125	2	503.787641	1005.56073	-0.067438	-3.3975E-05	-0.96266	-0.00048498	-1.0301	-0.00051895	503.7871863232753	37.643	1.3288	37.45	37.039	38.368	-0.193					110	36	6	0	0	0	0.24207	6	3040	3018;3028;3040;3052;3066;3079		133.47	32.257	1	35657000			6026	2053	3718	3733	7668;7669;7670;7671;7672;7673	7670					0.05817162680148158
DAYQKRLL	8	Unmodified	_DAYQKRLL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.787353515625	2	503.787641	1005.56073	-1.0748	-0.00054145	-0.00029819	-1.5022E-07	-1.0751	-0.0005416	503.78769416159184	37.668	1.2636	37.449	37.114	38.377	-0.2195					85	34	3	0	0	0	0.33369	6	3027	3017;3027;3039;3051;3063;3075		106.42	17.772	1	34818000			6027	2053	3718	3733	7674;7675;7676;7677;7678;7679	7675					0.05817162680148158
DAYQKRLL	8	Unmodified	_DAYQKRLL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.78692626953125	2	503.787641	1005.56073	-1.3292	-0.00066963	0.2118	0.0001067	-1.1174	-0.00056293	503.7878111637102	37.667	1.2652	37.448	37.144	38.409	-0.21848					81	34	3	0	0	0	0.39824	6	3039	3004;3015;3027;3039;3053;3065		97.473	17.533	1	31038000			6028	2053	3718	3733	7680;7681;7682;7683;7684;7685	7683					0.05817162680148158
DAYTKKEL	8	Unmodified	_DAYTKKEL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.2588806152344	2	484.258382	966.502212	-0.058644	-2.8399E-05	-0.14196	-6.8744E-05	-0.2006	-9.7143E-05	484.25806377143925	27.555	0.64366	27.313	26.995	27.638	-0.24217					39	14	4	0	0	0	0.27973	3	1535	1523;1535;1547		120.62	43.774	1	3034100			6029	5087	3719	3734	7686;7687;7688	7687					0.017620613149915698
DAYTKKEL	8	Unmodified	_DAYTKKEL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.25897216796875	2	484.258382	966.502212	-0.64457	-0.00031214	0.65226	0.00031586	0.0076934	3.7256E-06	484.25841979100005	27.377	0.59838	27.209	26.971	27.57	-0.16816					38	13	4	0	0	0	0.34573	1	1504	1504		104.75	38.317	1	2568100			6030	5087	3719	3734	7689	7689					0.017620613149915698
DAYVPTVTIL	10	Unmodified	_DAYVPTVTIL_					0	0	0			REV__IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	REV__IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2756958007812	2	546.30279	1090.59103	-0.45122	-0.0002465	-4.0788	-0.0022282	-4.53	-0.0024747	546.3002939856332	77.51	0.83495	77.51	77.125	77.959	0					24	19	2	0	0	0	0.03519	1	9532	9532		87.754	16.459	1	136510	+		6031	23443	3720	3735	7690	7690					0.04935476554692286
DAYVPTVTIL	10	Unmodified	_DAYVPTVTIL_					0	0	0			REV__IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	REV__IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2760009765625	2	546.30279	1090.59103	-0.96064	-0.0005248	-1.7306	-0.00094542	-2.6912	-0.0014702	546.3011550919218	77.634	0.63274	77.649	77.145	77.778	0.014214					19	14	2	0	0	0	0.03519	1	9457	9457		76.774	25.581	1	170480	+		6032	23443	3720	3735	7691	7691					0.04935476554692286
DCDPRLNLE	9	Unmodified	_DCDPRLNLE_					0	0	0			REV__ENSG00000198265|ENST00000358691|HELZ	REV__ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.74951171875	2	537.747856	1073.48116	-0.8579	-0.00046133	4.3396	0.0023336	3.4817	0.0018723	537.7500461653538	76.138	0.94579	76.138	75.732	76.678	0					63	23	4	0	0	0	0.56934	1	9379	9379		54.776	6.8607	1	1474900	+		6033	28406	3721	3736	7692	7692					-0.05264272056160735
DCDQRRFAI	9	Unmodified	_DCDQRRFAI_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2704467773438	2	562.26929	1122.52403	0.18023	0.00010134	3.0722	0.0017274	3.2524	0.0018287	562.271078021588	63.631	0.91331	63.372	63.122	64.035	-0.25824					42	23	3	0	0	0	0.024205	1	7285	7285		44.117	0	1	1311800	+		6034	22924	3722	3737	7693	7693					-0.03233457208079926
DCECYKGTI	9	Unmodified	_DCECYKGTI_					0	0	0			REV__nc|ENSG00000259207|P05106-2|ITGB3	REV__nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7904052734375	2	516.21226	1030.40997	-0.46717	-0.00024116	3.5178	0.0018159	3.0506	0.0015748	516.2140681426818	52.357	0.31881	52.357	52.236	52.554	0					14	7	2	0	0	0	0.024374	1	5632	5632		32.812	4.9302	1	68662	+		6035	29103	3723	3738	7694	7694					-0.10402108085190775
DCEHQVAKLNQ	11	Carbamidomethyl (C)	_DC(Carbamidomethyl (C))EHQVAKLNQ_	DC(1)EHQVAKLNQ		DC(55)EHQVAKLNQ		0	1	0		ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.87725830078125	3	447.878709	1340.6143	-0.24157	-0.00010819	-3.1695	-0.0014195	-3.411	-0.0015277	447.8774573127799	64.548	2.265	64.313	63.284	65.549	-0.2345					157	56	6	0	0	0	0.84303	1	7333	7333		55.084	16.37	1	9026900			6036	9865	3724	3739	7695	7695	133				-0.0423845267030174
DCEHQVAKLNQ	11	Carbamidomethyl (C)	_DC(Carbamidomethyl (C))EHQVAKLNQ_	DC(1)EHQVAKLNQ		DC(59)EHQVAKLNQ		0	1	0		ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.8770751953125	3	447.878709	1340.6143	-0.47417	-0.00021237	-2.9526	-0.0013224	-3.4268	-0.0015348	447.8775433382856	64.575	1.6373	64.319	63.795	65.432	-0.25563					101	40	6	0	0	0	0.78452	2	7341	7341;7355		58.63	14.979	1	9763000			6037	9865	3724	3739	7696;7697	7696	133				-0.0423845267030174
DCEHQVAKLNQ	11	Carbamidomethyl (C)	_DC(Carbamidomethyl (C))EHQVAKLNQ_					0	1	0		ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	447.878709	1340.6143	0.68069	0.00030487	-3.0635	-0.0013721	-2.3828	-0.0010672	447.87710864605526	64.282	0.88241	64.282	63.88	64.763	0	-0.020346	-0.00016589	NaN	58.63	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360400			6038	9865	3724	3739			133				-0.0423845267030174
DCEHQVAKLNQ	11	Carbamidomethyl (C)	_DC(Carbamidomethyl (C))EHQVAKLNQ_					0	1	0		ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	447.878709	1340.6143	-0.42801	-0.0001917	-2.1803	-0.00097652	-2.6083	-0.0011682	447.8775239561251	64.493	0.93387	64.23	63.939	64.873	-0.2626	-0.072443	0.0010207	NaN	58.63	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1097000			6039	9865	3724	3739			133				-0.0423845267030174
DCEHQVAKLNQ	11	Carbamidomethyl (C)	_DC(Carbamidomethyl (C))EHQVAKLNQ_					0	1	0		ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	ENSG00000196391|ENST00000354377|ZNF774	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	447.878709	1340.6143	0.39332	0.00017616	-3.2523	-0.0014566	-2.859	-0.0012805	447.8771937101172	64.306	2.0518	64.351	64.046	66.098	0.045502	0.048359	-0.00041959	NaN	58.63	93	55	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1270500			6040	9865	3724	3739			133				-0.0423845267030174
DCFGEEYRPK	10	Unmodified	_DCFGEEYRPK_					0	0	0		ENST00000433802.1_1_13:19591436-19592828:-|nuORF	ENST00000433802.1_1_13:19591436-19592828:-|nuORF	ENST00000433802.1_1_13:19591436-19592828:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.2071533203125	3	415.185251	1242.53392	-0.13134	-5.4532E-05	-3.3092	-0.001374	-3.4406	-0.0014285	415.1840460873646	36.678	0.4842	36.461	36.205	36.689	-0.21661					21	11	3	0	0	0	0.03519	1	2904	2904		14.086	0	1	101300			6041	14234	3725	3740	7698	7698					-0.07764313993402538
DCFQNKELP	9	Unmodified	_DCFQNKELP_					0	0	0		ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7295532226562	2	547.252774	1092.491	-0.38457	-0.00021046	-2.7591	-0.0015099	-3.1437	-0.0017204	547.2511185915936	62.086	0.82846	61.872	61.416	62.244	-0.21375					67	20	4	0	0	0	0.024367	1	6901	6901		52.937	12.364	1	4676800			6042	10869	3726	3741	7699	7699					-0.05155084050784353
DCFVPVPVS	9	Unmodified	_DCFVPVPVS_					0	0	0			REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF	REV__ENST00000571210.1_1_17:19288554-19290486:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7501525878906	2	481.736228	961.457904	-0.56072	-0.00027012	-0.70403	-0.00033916	-1.2648	-0.00060928	481.735807150876	31.11	0.42121	31.11	30.879	31.3	0					14	9	2	0	0	0	0.024323	1	2022	2022		44.117	0	1	115500	+		6043	26025	3727	3742	7700	7700					-0.02436666102835261
DCGFVREKLI	10	Unmodified	_DCGFVREKLI_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	590.2890014648438	2	590.313166	1178.61178	-0.81293	-0.00047988	-3.9457	-0.0023292	-4.7586	-0.0028091	590.3101634354565	86.494	0.34784	86.494	86.3	86.647	0					12	7	2	0	0	0	0.03519	1	10859	10859		41.427	6.2746	1	49335	+		6044	19162	3728	3743	7701	7701					0.02961743662694971
DCGFVREKLI	10	Unmodified	_DCGFVREKLI_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	590.313166	1178.61178	0.14975	8.8401E-05	-4.9584	-0.002927	-4.8086	-0.0028386	590.310008234364	86.514	0.72918	86.537	86.159	86.888	0.023674	0.021487	-0.00063891	NaN	41.427	22	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63742	+		6045	19162	3728	3743							0.02961743662694971
DCIHRLGQV	9	Unmodified	_DCIHRLGQV_					0	0	0		ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7664794921875	2	520.768926	1039.5233	-1.0985	-0.00057208	-4.1893	-0.0021817	-5.2879	-0.0027538	520.766710576239	47.412	3.6363	47.471	46.918	50.554	0.059097					219	103	5	0	0	0	0.33245	1	4727	4727		71.296	7.9894	1	75914000			6046	9686	3729	3744	7702	7702					0.005117481428669635
DCIKEVCLE	9	Unmodified	_DCIKEVCLE_					0	0	0		ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant;ENSG00000232040|ENST00000452236|SCAND3	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2794799804688	2	526.24356	1050.47257	0.67887	0.00035725	-3.1631	-0.0016646	-2.4842	-0.0013073	526.2414230145729	87.059	0.62984	87.08	86.761	87.391	0.021255					31	14	3	0	0	0	0.024495	1	10870	10870		34.173	13.691	1	179170			6047	10703	3730	3745	7703	7703					-0.05064962017013386
DCILRDTSE	9	Unmodified	_DCILRDTSE_					0	0	0		ENSG00000163060|ENST00000295201|TEKT4;ENST00000416067.5_1_21:9908333-9968552:-|nuORF;ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENSG00000163060|ENST00000295201|TEKT4;ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENST00000559466.1_1_21:9908333-9912191:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2791748046875	2	526.239864	1050.46517	-0.48969	-0.0002577	4.4428	0.002338	3.9531	0.0020803	526.2420699589234	87.096	0.75709	87.096	86.816	87.573	0					35	17	3	0	0	0	0.024457	1	10964	10964		37.159	3.2375	1	188130			6048	7029;16780	3731	3746	7704	7704					-0.058039782931018635
DCILRDTSE	9	Unmodified	_DCILRDTSE_					0	0	0		ENSG00000163060|ENST00000295201|TEKT4;ENST00000416067.5_1_21:9908333-9968552:-|nuORF;ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENSG00000163060|ENST00000295201|TEKT4;ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENST00000559466.1_1_21:9908333-9912191:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.239864	1050.46517	-0.25084	-0.000132	4.5992	0.0024203	4.3483	0.0022883	526.2421312670936	87.196	0.62616	87.018	86.612	87.238	-0.17875	-0.037351	0.00069277	NaN	45.952	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83582			6049	7029;16780	3731	3746							-0.058039782931018635
DCILRDTSE	9	Unmodified	_DCILRDTSE_					0	0	0		ENSG00000163060|ENST00000295201|TEKT4;ENST00000416067.5_1_21:9908333-9968552:-|nuORF;ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENSG00000163060|ENST00000295201|TEKT4;ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENST00000559466.1_1_21:9908333-9912191:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.239864	1050.46517	0.083704	4.4048E-05	3.3508	0.0017633	3.4345	0.0018073	526.2414787047435	87.189	0.8443	87.051	86.487	87.331	-0.13734	-0.0036051	-0.00062119	NaN	45.952	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104810			6050	7029;16780	3731	3746							-0.058039782931018635
DCIRRGVSMA	10	Unmodified	_DCIRRGVSMA_					0	0	0		ENST00000351030.7_1_9:131218425-131218497:+|nuORF	ENST00000351030.7_1_9:131218425-131218497:+|nuORF	ENST00000351030.7_1_9:131218425-131218497:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.25244140625	2	554.273518	1106.53248	0.16975	9.409E-05	4.4679	0.0024764	4.6376	0.0025705	554.2758705936126	57.419	0.3237	57.217	56.996	57.32	-0.20208					11	8	2	0	0	0	0.03519	1	6270	6270		32.812	3.6629	1	153600			6051	12598	3732	3747	7705	7705					-0.01652226563101067
DCKPDLKHV	9	Unmodified	_DCKPDLKHV_					0	0	0		nc|ENSG00000128656|P15882-3|CHN1;ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-2|CHN1;ENST00000485882.1_1_2:175676980-175711685:-|nuORF	nc|ENSG00000128656|P15882-3|CHN1	nc|ENSG00000128656|P15882-3|CHN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.772216796875	2	527.771134	1053.52771	-0.56501	-0.0002982	1.1869	0.00062642	0.62191	0.00032823	527.771596097736	47.84	0.8297	47.899	47.615	48.445	0.059097					52	23	3	0	0	0	0.59099	1	4764	4764		53.351	10.955	1	12209000			6052	4307	3733	3748	7706	7706					0.0030921256577585154
DCLISRHL	8	Unmodified	_DCLISRHL_					0	0	0			REV__ENST00000491629.5_1_1:161011134-161011230:-|nuORF	REV__ENST00000491629.5_1_1:161011134-161011230:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7525329589844	2	478.752744	955.490935	-0.23744	-0.00011368	-0.42652	-0.0002042	-0.66396	-0.00031787	478.75261987044075	32.433	0.59963	32.445	32.144	32.743	0.011795					53	15	4	0	0	0	0.6536	1	2227	2227		71.296	7.9894	1	19767000	+		6053	33728	3734	3749	7707	7707					0.011409607398718435
DCNTHDSLL	9	Unmodified	_DCNTHDSLL_					0	0	0		ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7719421386719	2	509.218931	1016.42331	-0.25003	-0.00012732	-2.8368	-0.0014446	-3.0869	-0.0015719	509.21731424531697	33.965	0.47583	33.96	33.676	34.152	-0.0045624					24	11	3	0	0	0	0.024292	1	2443	2443		58.782	12.83	1	243440			6054	6670	3735	3750	7708	7708					-0.08424533981587956
DCQTPVARPR	10	Unmodified	_DCQTPVARPR_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.72705078125	2	571.790389	1141.56623	0.48741	0.0002787	-1.2957	-0.00074085	-0.80825	-0.00046215	571.7893611826399	84.515	0.42502	84.377	84.151	84.576	-0.13788					16	9	2	0	0	0	0.03519	1	10215	10215		34.173	0	1	78212	+		6055	26558	3736	3751	7709	7709					0.0011051820029024384
DCQTPVARPR	10	Unmodified	_DCQTPVARPR_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	571.790389	1141.56623	0.60344	0.00034504	-1.4865	-0.00084998	-0.88309	-0.00050494	571.7896384534067	84.614	0.54853	84.411	84.167	84.716	-0.20329	0.017005	-9.4813E-05	NaN	31.53	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94192	+		6056	26558	3736	3751							0.0011051820029024384
DCRFWKQLAAR	11	Unmodified	_DCRFWKQLAAR_					0	0	0		ENST00000405592.5_1_2:42982327-42982585:+|nuORF	ENST00000405592.5_1_2:42982327-42982585:+|nuORF	ENST00000405592.5_1_2:42982327-42982585:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	3	465.243434	1392.70847	-0.27531	-0.00012809	3.0329	0.001411	2.7576	0.001283	465.2449489075336	51.286	0.70613	51.373	51.077	51.783	0.087006					49	19	4	0	0	0	0.024801	1	5362	5362		12.957	3.7457	1	1156900			6057	13722	3737	3752	7710	7710					0.02782730942476519
DCRLLRISV	9	Unmodified	_DCRLLRISV_					0	0	0		ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7835083007812	2	537.808051	1073.60155	2.1025	0.0011307	3.3894	0.0018228	5.4919	0.0029536	537.8096236205475	19.303	0.2958	19.369	19.192	19.488	0.066195					12	5	3	0	0	0	0.024495	1	353	353		34.173	7.4796	1	39169			6058	9941	3738	3753	7711	7711					0.06769180728088031
DCSEFVNQP	9	Unmodified	_DCSEFVNQP_					0	0	0		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1;ENST00000512983.5_1_4:156617950-156632415:+|nuORF	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2557983398438	2	519.713482	1037.41241	0.4633	0.00024078	2.6182	0.0013607	3.0815	0.0016015	519.714910129408	50.233	0.38084	50.052	49.901	50.282	-0.18071					12	9	2	0	0	0	0.024354	1	5123	5123		47.916	15.961	1	133970			6059	7216	3739	3754	7712	7712					-0.10479936355886821
DCSNFFAKT	9	Unmodified	_DCSNFFAKT_					0	0	0			REV__nc|ENSG00000196104|Q9BQ16-9|SPOCK3	REV__nc|ENSG00000196104|Q9BQ16-9|SPOCK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.80078125	2	516.726392	1031.43823	-0.35995	-0.00018599	2.7789	0.0014359	2.4189	0.0012499	516.7280715640961	36.647	0.46534	36.596	36.375	36.84	-0.051003					15	11	2	0	0	0	0.024344	1	2914	2914		37.812	3.8899	1	300980	+		6060	28126	3740	3755	7713	7713					-0.07623042113596057
DCSSPVIKNE	10	Unmodified	_DCSSPVIKNE_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.259765625	2	546.255514	1090.49647	0.80108	0.00043759	-1.453	-0.00079368	-0.65188	-0.00035609	546.2546099583782	59.679	0.51891	59.482	59.132	59.651	-0.19742					32	12	4	0	0	0	0.03519	1	6624	6624		58.23	21.783	1	1674600	+		6061	23401	3741	3756	7714	7714					-0.04515405258962346
DCSVPELL	8	Unmodified	_DCSVPELL_					0	0	0			REV__ENSG00000100368|ENST00000403662|CSF2RB	REV__ENSG00000100368|ENST00000403662|CSF2RB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.24700927734375	2	438.212586	874.410619	0.06535	2.8637E-05	2.3716	0.0010393	2.4369	0.0010679	438.2126572117501	26.707	0.54215	26.707	26.531	27.073	0					21	12	3	0	0	0	0.027866	1	1375	1375		25.45	4.9683	1	41886	+		6062	21104	3742	3757	7715	7715					-0.03160945373826962
DCSYTVADL	9	Unmodified	_DCSYTVADL_					0	0	0			REV__ENST00000469535.5_1_1:207934598-207940656:+|nuORF	REV__ENST00000469535.5_1_1:207934598-207940656:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	493.710408	985.406262	-0.13211	-6.5223E-05	3.6902	0.0018219	3.5581	0.0017567	493.71203721605207	42.326	1.9579	42.194	40.934	42.892	-0.1322					84	55	2	0	0	0	0.023417	1	3772	3772		79.451	13.022	1	216030	+		6063	33129	3743	3758	7716	7716					-0.08702454587398734
DCVIFATG	8	Unmodified	_DCVIFATG_					0	0	0		ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2376708984375	2	413.194196	824.37384	0.36525	0.00015092	-2.732	-0.0011289	-2.3668	-0.00097795	413.1934740787664	76.922	0.75775	76.654	76.296	77.054	-0.26806					39	18	4	0	0	0	0.027866	1	9112	9112		25.45	0	1	372220			6064	827	3744	3759	7717	7717					-0.045371971997496985
DCVKPLSICT	10	Unmodified	_DCVKPLSICT_					0	0	0			REV__ENSG00000187045|ENST00000676104|TMPRSS6	REV__ENSG00000187045|ENST00000676104|TMPRSS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7835083007812	2	539.767203	1077.51985	2.2744	0.0012276	1.9202	0.0010365	4.1946	0.0022641	539.7677109147586	19.153	1.4159	19.22	18.553	19.969	0.066195					72	28	3	0	0	0	0.03519	1	353	353		42.864	0	1	193490	+		6065	27907	3745	3760	7718	7718					-0.015806827459982742
DCWDGAQN	8	Unmodified	_DCWDGAQN_					0	0	0		ENSG00000139151|ENST00000266505|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.2663879394531	2	454.663792	907.313031	0.21533	9.7902E-05	-2.2	-0.0010002	-1.9846	-0.00090234	454.66259323101514	63.33	0.68918	63.072	62.663	63.352	-0.25824					25	16	2	0	0	0	0.027866	1	7161	7161		47.657	10.498	1	120450			6066	5303	3746	3761	7719	7719					-0.14433334249974905
DCYTFSVLI	9	Unmodified	_DCYTFSVLI_					0	0	0		ENST00000394321.9_1_19:7591427-7598678:+|nuORF;ENSG00000090674|ENST00000264079|MCOLN1	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.8135375976562	2	530.754618	1059.49468	-0.65313	-0.00034665	-3.9441	-0.0020934	-4.5972	-0.00244	531.2538402220596	77.879	0.45025	77.879	77.632	78.082	0					16	10	2	0	0	0	0.024436	1	9630	9630		23.042	6.5693	1	61315			6067	13485	3747	3762	7720	7720					-0.032684142769085156
DDAAVLKRRGY	11	Unmodified	_DDAAVLKRRGY_					0	0	0		ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.85931396484375	3	421.898321	1262.67313	-0.15131	-6.3839E-05	3.5148	0.0014829	3.3635	0.001419	421.8996896107846	42.78	0.57344	42.554	42.26	42.833	-0.22597					26	14	3	0	0	0	0.024726	1	3901	3901		25.892	8.0586	1	191430			6068	10479	3748	3763	7721	7721					0.05230391686313851
DDAAVLKRRGY	11	Unmodified	_DDAAVLKRRGY_					0	0	0		ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	421.898321	1262.67313	0.023581	9.9488E-06	3.0921	0.0013045	3.1156	0.0013145	421.8995508719647	42.496	0.56747	42.373	42.116	42.683	-0.12299	-0.084033	-0.00029262	NaN	25.892	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168160			6069	10479	3748	3763							0.05230391686313851
DDAAVLKRRGY	11	Unmodified	_DDAAVLKRRGY_					0	0	0		ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	421.898321	1262.67313	-0.23393	-9.8694E-05	3.2761	0.0013822	3.0421	0.0012835	421.89967826595756	42.677	0.56937	42.445	42.155	42.725	-0.23186	-0.01201	-5.9737E-05	NaN	25.892	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198270			6070	10479	3748	3763							0.05230391686313851
DDAIVQRL	8	Unmodified	_DDAIVQRL_					0	0	0		ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2560729980469	2	465.256174	928.497795	0.41893	0.00019491	-1.5203	-0.00070732	-1.1014	-0.00051241	465.2551639974379	36.834	1.4916	36.872	36.301	37.793	0.038044					66	39	3	0	0	0	0.87148	1	2900	2900		53.351	0.41475	1	2642500			6071	8160	3749	3764	7722	7722					0.03068596892092046
DDCNSDSSNH	10	Unmodified	_DDCNSDSSNH_					0	0	0			REV__ENSG00000156218|ENST00000286744|ADAMTSL3	REV__ENSG00000156218|ENST00000286744|ADAMTSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.326416015625	2	547.177992	1092.34143	-0.67917	-0.00037162	0.5495	0.00030068	-0.12966	-7.0949E-05	547.1784154347893	41.458	0.13673	41.481	41.394	41.53	0.023006					5	3	2	0	0	0	0.03519	1	3670	3670		34.173	8.5985	1	40736	+		6072	25059	3750	3765	7723	7723					-0.20104681131351754
DDDEPQETIY	10	Unmodified	_DDDEPQETIY_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	612.775146484375	2	612.748773	1223.48299	-0.50598	-0.00031004	1.0418	0.00063836	0.53581	0.00032832	612.7492035014998	48.96	0.59405	48.778	48.521	49.115	-0.18206					36	15	3	0	0	0	0.03519	1	4909	4909		38.754	0	1	880060	+		6073	28147	3751	3766	7724	7724					-0.11980984557203556
DDDFCFKNL	9	Unmodified	_DDDFCFKNL_					0	0	0			REV__nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	REV__nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.264892578125	2	558.736957	1115.45936	-0.39832	-0.00022255	-1.9582	-0.0010941	-2.3565	-0.0013167	558.7354924155848	82.72	0.64362	82.747	82.359	83.003	0.02655					25	14	2	0	0	0	0.024427	1	10279	10279		34.173	14.176	1	131050	+		6074	22989	3752	3767	7725	7725					-0.09375076804735727
DDDIAALVV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DDDIAALVV_					1	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7471008300781	2	486.747847	971.481142	-1.0539	-0.00051297	-0.28638	-0.00013939	-1.3403	-0.00065237	486.74797832478146	106.39	0.29813	106.26	106.14	106.44	-0.13279					18	13	2	0	0	0	0.70186	1	13239	13239		45.952	14.422	1	183300			6075	1564;14709	3753	3768	7726	7726					-0.005739487845175972
DDDLARKIASL	11	Unmodified	_DDDLARKIASL_					0	0	0			REV__ENSG00000134899|ENST00000652225|ERCC5	REV__ENSG00000134899|ENST00000652225|ERCC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	608.293212890625	2	608.830234	1215.64592	-0.8656	-0.000527	3.0708	0.0018696	2.2052	0.0013426	609.334353123466	60.545	0.20961	60.292	60.212	60.421	-0.25373					6	4	2	0	0	0	0.024723	1	6737	6737		12.207	0	1	87112	+		6076	23493	3754	3769	7727	7727					0.04671863355270034
DDDTSIRTF	9	Unmodified	_DDDTSIRTF_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7847900390625	2	535.24346	1068.47237	-0.47174	-0.0002525	1.856	0.00099341	1.3843	0.00074091	535.2442454422717	55.967	1.0332	55.967	55.679	56.712	0					40	28	2	0	0	0	0.024457	1	6193	6193		15.642	0	1	176250	+		6077	20221	3755	3770	7728	7728					-0.05912922420998257
DDDVRQILL	9	Unmodified	_DDDVRQILL_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.3107299804688	2	543.793121	1085.57169	-0.93955	-0.00051092	1.5725	0.00085511	0.63294	0.00034419	543.7948482293532	43.232	0.21771	43.092	42.956	43.174	-0.13929					8	5	2	0	0	0	0.024466	1	4016	4016		47.657	22.207	1	56264			6078	10221	3756	3771	7729	7729					0.03232520263782135
DDDVRQILL	9	Unmodified	_DDDVRQILL_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.793121	1085.57169	-0.42616	-0.00023174	3.2625	0.0017741	2.8364	0.0015424	543.7945380167195	43.247	0.25645	43.134	42.962	43.218	-0.11253	0.020933	0.00074201	NaN	56.721	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60237			6079	10221	3756	3771							0.03232520263782135
DDDVWLVYK	9	Unmodified	_DDDVWLVYK_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;REV__ENST00000552468.1_1_12:58021700-58022177:-|nuORF	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7813720703125	2	576.782222	1151.54989	-1.2871	-0.00074239	1.3528	0.00078029	0.065701	3.7895E-05	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	0.75397	1	7483	7483		42.396	0	1	1856800	+		6080	26099;23548	3757	3772	7730	7730					-0.019822844848249588
DDEAKDEEALL	11	Unmodified	_DDEAKDEEALL_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.7094421386719	3	416.526107	1246.55649	-0.2995	-0.00012475	1.2537	0.00052219	0.95417	0.00039743	416.5265357453303	26.593	0.69263	26.424	25.988	26.68	-0.16816					30	17	3	0	0	0	0.024751	1	1361	1361		34.087	2.4522	1	158360	+		6081	36925	3758	3773	7731	7731					-0.05692436114736665
DDEDENAT	8	Unmodified	_DDEDENAT_					0	0	0		sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.6627502441406	2	454.659426	907.3043	-0.33582	-0.00015268	4.2949	0.0019527	3.9591	0.0018	454.66278773199485	68.652	2.5922	68.39	67.573	70.165	-0.26165					185	62	5	0	0	0	0.99042	1	7931	7931		38.806	6.8513	1	1315700			6082	37940	3759	3774	7732	7732					-0.15306029405462596
DDEDENAT	8	Unmodified	_DDEDENAT_					0	0	0		sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	454.659426	907.3043	0.28412	0.00012918	6.9077	0.0031407	7.1918	0.0032698	454.66112792970307	68.5	0.19366	68.5	68.407	68.6	0	0.0052607	0.0017722	NaN	38.806	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28212			6083	37940	3759	3774							-0.15306029405462596
DDEDENAT	8	Unmodified	_DDEDENAT_					0	0	0		sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.659426	907.3043	0.44226	0.00020108	5.7079	0.0025952	6.1502	0.0027962	454.66206623564426	69.022	0.34026	68.73	68.556	68.897	-0.29266	0.23539	0.00068121	NaN	38.806	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44647			6084	37940	3759	3774							-0.15306029405462596
DDEDENAT	8	Unmodified	_DDEDENAT_					0	0	0		sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	sp|P06789|VE1_HPV18ReplicationproteinE1OS=Humanpapillomavirustype18OX=333761GN=E1PE=1SV=1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	454.659426	907.3043	0.20904	9.5041E-05	3.8935	0.0017702	4.1025	0.0018653	454.6625655336982	68.656	1.7912	68.426	67.715	69.506	-0.23048	-0.068454	-0.00096868	NaN	38.806	156	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1243300			6085	37940	3759	3774							-0.15306029405462596
DDEDYKDI	8	Unmodified	_DDEDYKDI_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.79229736328125	2	506.708919	1011.40329	-1.2764	-0.00064677	1.3712	0.00069478	0.09474	4.8006E-05	507.2123460296212	44.338	0.40196	44.193	43.958	44.359	-0.14471					18	11	3	0	0	0	0.027866	1	4162	4162		65.803	0	1	141490			6086	7105	3760	3775	7733	7733					-0.10196006440571637
DDEGNYKTV	9	Unmodified	_DDEGNYKTV_					0	0	0		ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7322387695312	2	520.730186	1039.44582	-0.76517	-0.00039845	-0.65554	-0.00034136	-1.4207	-0.0007398	520.7293004597624	56.991	0.59276	56.991	56.712	57.305	0					27	16	2	0	0	0	0.024495	1	6388	6388		34.173	3.6689	1	237410			6087	10008	3761	3776	7734	7734					-0.07232611312315385
DDEHYFWYLIP	11	Unmodified	_DDEHYFWYLIP_					0	0	0			REV__ENSG00000160856|ENST00000368184|FCRL3	REV__ENSG00000160856|ENST00000368184|FCRL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.8959655761719	3	499.894354	1496.66123	0.16129	8.0626E-05	2.9703	0.0014848	3.1316	0.0015654	499.8959418372608	46.225	1.087	46.225	45.953	47.04	0					69	29	4	0	0	0	1.0712	1	4553	4553		19.263	0.73163	1	2489800	+		6088	25352	3762	3777	7735	7735					-0.06723269847520896
DDEILIELT	9	Unmodified	_DDEILIELT_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.323486328125	2	530.774062	1059.53357	1.1959	0.00063474	3.234	0.0017165	4.4299	0.0023513	530.7757387104581	36.768	0.4784	36.558	36.405	36.883	-0.2092					19	11	2	0	0	0	0.023181	1	2873	2873		82.305	5.4584	1	400470	+		6089	23390	3763	3778	7736	7736					0.00618589558439453
DDEILIELT	9	Unmodified	_DDEILIELT_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.774062	1059.53357	-0.30532	-0.00016205	4.5807	0.0024313	4.2753	0.0022692	530.7763106756094	36.717	0.49218	36.717	36.474	36.966	0	0.083827	1.4802E-05	NaN	82.305	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580840	+		6090	23390	3763	3778							0.00618589558439453
DDEILIELT	9	Unmodified	_DDEILIELT_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.774062	1059.53357	-0.76566	-0.00040639	4.834	0.0025657	4.0683	0.0021594	530.7764519795019	36.583	0.6403	36.541	36.208	36.849	-0.042454	-0.092076	0.00028369	NaN	82.305	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	764180	+		6091	23390	3763	3778							0.00618589558439453
DDEILIELT	9	Unmodified	_DDEILIELT_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.774062	1059.53357	-0.55588	-0.00029504	4.7293	0.0025102	4.1734	0.0022151	530.7764244702877	36.663	0.52405	36.701	36.478	37.002	0.038044	0.068175	0.00017254	NaN	82.305	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646830	+		6092	23390	3763	3778							0.00618589558439453
DDEIYHCKCL	10	Unmodified	_DDEIYHCKCL_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.24053955078125	3	413.510858	1237.51074	-0.61183	-0.000253	3.1984	0.0013226	2.5865	0.0010696	413.51219612230176	34.323	0.67156	34.147	33.742	34.413	-0.17557					24	16	2	0	0	0	0.03519	1	2453	2453		11.636	0	1	114910	+		6093	22811	3764	3779	7737	7737					-0.09851076102313527
DDELDLSH	8	Unmodified	_DDELDLSH_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.2926330566406	2	472.203804	942.393055	-0.77772	-0.00036724	-1.7607	-0.00083139	-2.5384	-0.0011986	472.20288427595887	60.889	1.1758	60.713	60.362	61.538	-0.1761					37	28	2	0	0	0	0.027866	1	6805	6805		7.6903	0	1	108370	+		6094	24559	3765	3780	7738	7738					-0.0804456937513578
DDESRLNDL	9	Unmodified	_DDESRLNDL_					0	0	0			REV__ENST00000478958.5_1_2:238678415-238688172:+|nuORF	REV__ENST00000478958.5_1_2:238678415-238688172:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.758056640625	2	538.746367	1075.47818	-0.80889	-0.00043579	1.8463	0.00099468	1.0374	0.0005589	538.7458813206755	39.675	0.23204	39.445	39.275	39.507	-0.2302					6	5	2	0	0	0	0.024506	1	3352	3352		23.042	13.86	1	58558	+		6095	22794	3766	3781	7739	7739					-0.05653823909324274
DDEYPFNL	8	Unmodified	_DDEYPFNL_					0	0	0			REV__nc|ENSG00000128191|Q8WYQ5-2|DGCR8	REV__nc|ENSG00000128191|Q8WYQ5-2|DGCR8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7922668457031	2	506.716547	1011.41854	-1.205	-0.00061059	-1.8857	-0.0009555	-3.0907	-0.0015661	507.2176348012533	43.929	0.18604	43.929	43.836	44.022	0					6	4	2	0	0	0	0.027866	1	4156	4156		37.159	0	1	43725	+		6096	22967	3767	3782	7740	7740					-0.0867109485269566
DDFECYQLN	9	Unmodified	_DDFECYQLN_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2783203125	2	573.724046	1145.43354	0.1371	7.866E-05	-3.0719	-0.0017624	-2.9348	-0.0016838	573.7223333601019	79.023	0.46582	78.791	78.476	78.942	-0.23141					13	10	2	0	0	0	0.024447	1	9414	9414		32.812	12.816	1	81015	+		6097	23567	3768	3783	7741	7741					-0.1333597104699038
DDFILGILN	9	Unmodified	_DDFILGILN_					0	0	0		ENST00000442692.2_1_11:68845982-68853340:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2	ENST00000442692.2_1_11:68845982-68853340:+|nuORF	ENST00000442692.2_1_11:68845982-68853340:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2635498046875	2	510.274032	1018.53351	-0.15008	-7.6584E-05	3.9559	0.0020186	3.8058	0.001942	510.2756840617784	74.864	1.1039	74.601	73.966	75.07	-0.26326					64	25	3	0	0	0	0.024319	1	8853	8853		47.657	0	1	501360			6098	6927	3769	3784	7742	7742					0.024986343491036678
DDFKKVSIGK	10	Unmodified	_DDFKKVSIGK_					0	0	0		DNAJC3-FOXN3|1|fusion;DNAJC3-FOXN3|2|fusion	DNAJC3-FOXN3|1|fusion	DNAJC3-FOXN3|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7733154296875	2	568.819138	1135.62372	-0.029285	-1.6658E-05	3.2267	0.0018354	3.1974	0.0018187	568.8209132458408	78.11	0.67955	77.954	77.617	78.297	-0.15591					49	15	4	0	0	0	0.03519	1	9289	9289		23.523	0.48021	1	976210			6099	658	3770	3785	7743	7743					0.06133683677512636
DDFLQLATSL	10	Unmodified	_DDFLQLATSL_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2660522460938	2	561.787504	1121.56045	0.37816	0.00021244	-3.3652	-0.0018905	-2.987	-0.0016781	561.7854048169197	59.827	0.63711	59.651	59.361	59.998	-0.1761					33	16	3	0	0	0	0.03519	1	6602	6602		37.812	12.237	1	670340	+		6100	36535	3771	3786	7744	7744					0.004536981696446674
DDFRACLI	8	Unmodified	_DDFRACLI_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000553882.1_1_14:69345168-69345225:-|nuORF;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7799072265625	2	476.731477	951.448402	0.45129	0.00021514	-0.83792	-0.00039947	-0.38664	-0.00018432	476.7311699702958	33.796	0.59625	33.796	33.454	34.05	0					25	15	2	0	0	0	0.027866	1	2499	2499		8.2313	0	1	140420			6101	18075;10836	3772	3787	7745	7745					-0.029264343883710353
DDFYMWKR	8	Unmodified	_DDFYMWKR_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7926025390625	2	580.763309	1159.51206	-0.61804	-0.00035893	3.1273	0.0018162	2.5093	0.0014573	580.7647389917757	35.701	0.31021	35.488	35.298	35.608	-0.21312					14	7	3	0	0	0	0.027866	1	2732	2732		47.916	25.336	1	324150	+		6102	26005	3773	3788	7746	7746					-0.061310739512691725
DDGARIGAAV	10	Unmodified	_DDGARIGAAV_					0	0	0			REV__ENST00000609803.2_1_12:46120637-46120871:-|nuORF	REV__ENST00000609803.2_1_12:46120637-46120871:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.74530029296875	2	472.743431	943.472308	0.12763	6.0338E-05	3.9683	0.001876	4.096	0.0019363	472.74515791392236	49.097	0.79708	48.944	48.646	49.443	-0.15276					47	21	3	0	0	0	0.71272	1	5032	5032		66.429	4.3219	1	3535000	+		6103	35987	3774	3789	7747	7747					-0.001688776303353734
DDGIEDSLL	9	Unmodified	_DDGIEDSLL_					0	0	0			REV__nc|ENSG00000069431|O60706|ABCC9	REV__nc|ENSG00000069431|O60706|ABCC9	MSMS	OPSCC_40_ClassI_Rep-1	4	488.7276306152344	2	488.727112	975.439671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.252	1	80.015	79.515	80.515	-0.23784								0	0	0	0.53756	1	9605	9605		47.916	0	1		+		6104	20402	3775	3790	7748	7748					-0.049031295438453526
DDGIRHLG	8	Unmodified	_DDGIRHLG_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7660827636719	2	441.725041	881.435529	0.019499	8.6132E-06	1.237	0.0005464	1.2565	0.00055501	441.7253674112732	37.2	0.37767	37.007	36.851	37.229	-0.193					14	9	2	0	0	0	0.027866	1	2992	2992		57.811	19.005	1	108400			6105	2887	3776	3791	7749	7749					-0.00993129456242059
DDGIRHLG	8	Unmodified	_DDGIRHLG_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	441.725041	881.435529	1.4253	0.00062959	-1.2268	-0.00054189	0.19853	8.7697E-05	441.72434383108043	37.119	0.76556	37.119	36.685	37.45	0	0.066947	-0.00061686	NaN	57.811	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255830			6106	2887	3776	3791							-0.00993129456242059
DDGIRHLG	8	Unmodified	_DDGIRHLG_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.725041	881.435529	0.44252	0.00019547	-0.35712	-0.00015775	0.085405	3.7726E-05	441.72486161054564	36.982	0.65744	36.919	36.47	37.127	-0.063385	-0.13348	0.00015143	NaN	57.811	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236500			6107	2887	3776	3791							-0.00993129456242059
DDGIRHLG	8	Unmodified	_DDGIRHLG_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	441.725041	881.435529	0.12922	5.708E-05	-0.015773	-6.9672E-06	0.11345	5.0113E-05	441.7249424832271	37.132	0.49503	37.164	36.918	37.413	0.032272	0.11177	0.00045299	NaN	57.811	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348290			6108	2887	3776	3791							-0.00993129456242059
DDGKCHRH	8	Unmodified	_DDGKCHRH_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.301025390625	2	484.211775	966.408997	-0.061534	-2.9795E-05	-3.4308	-0.0016612	-3.4923	-0.001691	484.2099933696946	54.617	0.38921	54.715	54.491	54.881	0.098015					17	10	2	0	0	0	0.027866	1	5930	5930		47.916	10.887	1	201440	+		6109	22761	3777	3792	7750	7750					-0.07555141619218375
DDGKCHRH	8	Unmodified	_DDGKCHRH_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.211775	966.408997	-0.17221	-8.3385E-05	-3.7584	-0.0018199	-3.9306	-0.0019033	484.209827490189	54.801	0.42715	54.801	54.656	55.083	0	0.015654	-0.00012996	NaN	47.916	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178100	+		6110	22761	3777	3792							-0.07555141619218375
DDGKCHRH	8	Unmodified	_DDGKCHRH_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.211775	966.408997	-0.22572	-0.0001093	-3.4653	-0.001678	-3.6911	-0.0017873	484.210197616299	54.991	0.42557	54.84	54.574	55	-0.15036	0.054635	0.00015385	NaN	47.916	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144350	+		6111	22761	3777	3792							-0.07555141619218375
DDGQPVPLSVD	11	Unmodified	_DDGQPVPLSVD_					0	0	0		ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENST00000503486.6_1_5:178195542-178224582:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.8218994140625	2	571.272218	1140.52988	-0.79874	-0.0004563	1.3	0.00074268	0.5013	0.00028638	571.2731799433628	51.982	0.97112	51.982	51.702	52.673	0					41	25	3	0	0	0	0.02478	1	5573	5573		47.96	13.787	1	190760			6112	15690	3778	3793	7751	7751					-0.034760802154323756
DDGQPVPLSVD	11	Unmodified	_DDGQPVPLSVD_					0	0	0		ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENST00000503486.6_1_5:178195542-178224582:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.272218	1140.52988	0.24529	0.00014013	-0.04667	-2.6661E-05	0.19862	0.00011347	571.2729313229237	52.435	0.2358	52.288	52.17	52.406	-0.14723	0.15288	-0.0013728	NaN	47.96	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49810			6113	15690	3778	3793							-0.034760802154323756
DDHKSPSW	8	Unmodified	_DDHKSPSW_					0	0	0		ENSG00000169946|ENST00000407775|ZFPM2;nc|ENSG00000169946|Q8WW38-2|ZFPM2	ENSG00000169946|ENST00000407775|ZFPM2	ENSG00000169946|ENST00000407775|ZFPM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7849426269531	2	486.214506	970.414459	-0.17224	-8.3746E-05	1.03	0.0005008	0.85776	0.00041705	486.2147086334861	101.77	1.4616	101.77	101.17	102.63	0.0073471					40	33	2	0	0	0	0.027866	1	13043	13043		24.203	0	1	44027			6114	7993	3779	3794	7752	7752					-0.07193139555749894
DDKLELQY	8	Unmodified	_DDKLELQY_					0	0	0			REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.25341796875	2	512.253297	1022.49204	-0.424	-0.00021719	0.64677	0.00033131	0.22278	0.00011412	512.2535215810951	57.041	1.0419	56.874	56.402	57.444	-0.1672					76	27	4	0	0	0	0.77775	1	6222	6222		60.972	9.6365	1	5266700	+		6115	20116	3780	3795	7753	7753					-0.01830546410246825
DDKWAPLQ	8	Unmodified	_DDKWAPLQ_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7593994140625	2	486.742899	971.471246	0.99138	0.00048255	3.5901	0.0017475	4.5815	0.00223	486.74432762619324	37.192	0.62715	37.192	37.005	37.632	0					33	16	4	0	0	0	0.027866	1	3059	3059		37.159	4.3467	1	230520			6116	6234	3781	3796	7754	7754					-0.015630919992531744
DDLDQRQP	8	Unmodified	_DDLDQRQP_					0	0	0			REV__THEMIS2|p.A618T|1|0.2|ENSG00000130775|chr1:27885427-27885427|G/A|missense_variant	REV__THEMIS2|p.A618T|1|0.2|ENSG00000130775|chr1:27885427-27885427|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7686767578125	2	493.73052	985.446488	-0.54883	-0.00027097	-3.9379	-0.0019443	-4.4867	-0.0022152	493.7291217275394	70.297	0.45178	70.029	69.745	70.197	-0.26841					13	10	2	0	0	0	0.027866	1	8140	8140		55.504	16.698	1	83741	+		6117	23155	3782	3797	7755	7755					-0.04681771872617446
DDLLWVAR	8	Unmodified	_DDLLWVAR_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-3|EBPL	REV__nc|ENSG00000123179|Q9BY08-3|EBPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7686767578125	2	494.266542	986.51853	-0.49392	-0.00024413	-1.6489	-0.00081498	-2.1428	-0.0010591	494.2655274311677	70.328	0.40894	70.056	69.784	70.193	-0.27185					12	9	2	0	0	0	0.027866	1	8140	8140		38.806	13.356	1	107400	+		6118	36625	3783	3798	7756	7756					0.02473187271743882
DDLLWVAR	8	Unmodified	_DDLLWVAR_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-3|EBPL	REV__nc|ENSG00000123179|Q9BY08-3|EBPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.266542	986.51853	0.03773	1.8649E-05	-3.1325	-0.0015483	-3.0948	-0.0015296	494.26382616613245	70.272	0.32637	70.022	69.817	70.143	-0.25063	-0.19402	-0.0039868	NaN	38.806	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58942	+		6119	36625	3783	3798							0.02473187271743882
DDLLWVAR	8	Unmodified	_DDLLWVAR_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-3|EBPL	REV__nc|ENSG00000123179|Q9BY08-3|EBPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.266542	986.51853	0.21672	0.00010712	-2.5306	-0.0012508	-2.3139	-0.0011437	494.26480743844974	70.258	0.32089	70.044	69.814	70.135	-0.21425	-0.17207	-0.0033918	NaN	38.806	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111790	+		6120	36625	3783	3798							0.02473187271743882
DDLRDNVLN	9	Unmodified	_DDLRDNVLN_					0	0	0		ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	ENSG00000129910|ENST00000289746|CDH15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3058471679688	2	537.264727	1072.5149	-0.66552	-0.00035756	-3.8212	-0.002053	-4.4867	-0.0024105	537.2624953722622	68.57	0.23135	68.57	68.369	68.6	0					9	5	3	0	0	0	0.024427	1	8197	8197		26.693	0	1	132750			6121	4370	3784	3799	7757	7757					-0.018455272927440092
DDLRVWKL	8	Unmodified	_DDLRVWKL_					0	0	0			REV__ENST00000442838.2_1_8:123781530-123781986:+|nuORF	REV__ENST00000442838.2_1_8:123781530-123781986:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	522.7962646484375	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.118	1	35.92	35.42	36.42	-0.19829								0	0	0	0.68408	1	2791	2791		42.474	1.9018	1		+		6122	32571	3785	3800	7758	7758					0.056334491971938405
DDLSQQILD	9	Unmodified	_DDLSQQILD_					0	0	0			REV__ENSG00000105298|ENST00000429344|CACTIN	REV__ENSG00000105298|ENST00000429344|CACTIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2637329101562	2	523.753661	1045.49277	-0.61596	-0.00032261	-3.4984	-0.0018323	-4.1144	-0.0021549	523.7521802903452	54.481	0.69612	54.344	54.151	54.847	-0.13617					27	18	2	0	0	0	0.024466	1	5768	5768		47.657	1.6851	1	229580	+		6123	21510	3786	3801	7759	7759					-0.02815751761181673
DDLVTRERL	9	Unmodified	_DDLVTRERL_					0	0	0		ENST00000573881.1_1_17:9444067-9460824:-|nuORF;ENSG00000170310|ENST00000306357|STX8	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2653198242188	2	558.80402	1115.59349	-0.068855	-3.8476E-05	2.833	0.0015831	2.7642	0.0015446	558.8056171410466	63.245	0.59656	63.024	62.776	63.372	-0.22097					20	14	2	0	0	0	0.024466	1	7103	7103		31.53	0	1	241510			6124	8021	3787	3802	7760	7760					0.040313250123290345
DDLVTRERL	9	Unmodified	_DDLVTRERL_					0	0	0		ENST00000573881.1_1_17:9444067-9460824:-|nuORF;ENSG00000170310|ENST00000306357|STX8	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.80402	1115.59349	-0.2586	-0.00014451	3.0061	0.0016798	2.7475	0.0015353	558.8057025757207	63.241	0.44145	63.058	62.83	63.272	-0.18386	0.0078021	6.2441E-05	NaN	64.207	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210710			6125	8021	3787	3802							0.040313250123290345
DDLVTRERL	9	Unmodified	_DDLVTRERL_					0	0	0		ENST00000573881.1_1_17:9444067-9460824:-|nuORF;ENSG00000170310|ENST00000306357|STX8	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.80402	1115.59349	0.047636	2.6619E-05	3.015	0.0016848	3.0626	0.0017114	558.8057747289673	63.326	0.54923	63.068	62.876	63.425	-0.25824	0.018316	7.243E-05	NaN	64.207	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259540			6126	8021	3787	3802							0.040313250123290345
DDLVVETPK	9	Unmodified	_DDLVVETPK_					0	0	0			REV__ENST00000505854.5_1_5:122110798-122139331:+|nuORF	REV__ENST00000505854.5_1_5:122110798-122139331:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2820129394531	2	508.268947	1014.52334	0.21887	0.00011124	-1.9803	-0.0010065	-1.7614	-0.00089529	508.2687491858374	23.747	0.13202	23.545	23.48	23.612	-0.20193					4	2	2	0	0	0	0.024381	1	970	970		45.952	1.8352	1	36076	+		6127	28670	3788	3803	7761	7761					0.016660266238545773
DDMEKIWHHT	10	Unmodified	_DDMEKIWHHT_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE;ENST00000418351.1_1_15:44281927-44282254:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE;ENST00000418351.1_1_15:44281927-44282254:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.5293884277344	3	437.8644	1310.57137	-0.051891	-2.2721E-05	-2.1922	-0.00095989	-2.2441	-0.00098261	437.8633265940902	31.998	0.54299	31.762	31.411	31.954	-0.23667					22	12	2	0	0	0	0.03519	1	2168	2168		36.318	16.691	1	700830			6128	1564;14709;9900;9925;9702;13935	3789	3804	7762	7762					-0.07149222727753113
DDMGVIVLNL	10	Unmodified	_DDMGVIVLNL_					0	0	0		ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENST00000456504.5_1_15:94858078-95022260:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8241577148438	2	544.78645	1087.55835	-0.80217	-0.00043701	-2.5453	-0.0013867	-3.3475	-0.0018237	544.78507260598	67.099	0.36124	67.122	67.028	67.389	0.023911					11	8	2	0	0	0	0.03519	1	7916	7916		19.997	0	1	102620			6129	5427	3790	3805	7763	7763					0.018069461601498915
DDMNWYQQK	9	Unmodified	_DDMNWYQQK_					0	0	0		nc|ENSG00000211599|P06315|IGKV5-2	nc|ENSG00000211599|P06315|IGKV5-2	nc|ENSG00000211599|P06315|IGKV5-2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.9156494140625	3	409.841484	1226.50262	0.27939	0.00011451	3.0701	0.0012582	3.3495	0.0013727	409.84261231530485	32.078	0.60126	31.842	31.529	32.13	-0.23667					21	13	2	0	0	0	0.024539	1	2202	2202		11.097	0	1	79201			6130	18678	3791	3806	7764	7764					-0.1015688702746047
DDMQAVTFI	9	Oxidation (M)	_DDM(Oxidation (M))QAVTFI_		DDM(1)QAVTFI		DDM(77)QAVTFI	0	0	1			REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4;REV__ENSG00000124140|ENST00000243964|SLC12A5	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.23876953125	2	528.239332	1054.46411	-0.63625	-0.00033609	0.61394	0.00032431	-0.02231	-1.1785E-05	528.2394985697882	67.637	3.6181	67.637	66.41	70.029	0					256	93	4	0	0	0	0.29158	1	8020	8020		76.774	7.9873	1	5184300	+		6131	22735;22727	3792	3807	7765	7765		677			-0.06094192661998932
DDNWQFMY	8	Unmodified	_DDNWQFMY_					0	0	0			REV__ENSG00000204381|ENST00000375614|LAYN	REV__ENSG00000204381|ENST00000375614|LAYN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.2890625	2	559.716024	1117.4175	0.69701	0.00039013	1.629	0.00091178	2.326	0.0013019	559.7166763119253	51.146	0.34866	50.965	50.834	51.182	-0.18071					12	8	2	0	0	0	0.027866	1	5249	5249		26.796	2.5934	1	93156	+		6132	28598	3793	3808	7766	7766					-0.13651632493247234
DDPEHLAA	8	Unmodified	_DDPEHLAA_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2663269042969	2	434.195782	866.377011	-0.18048	-7.8361E-05	1.5368	0.00066728	1.3564	0.00058892	434.1962599865738	24.807	0.52444	24.592	24.418	24.943	-0.2151					14	11	2	0	0	0	0.027866	1	1121	1121		60.294	0	1	81608			6133	7416	3794	3809	7767	7767					-0.06152230821385274
DDPEHLAA	8	Unmodified	_DDPEHLAA_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2663269042969	2	434.195782	866.377011	-0.034132	-1.482E-05	2.4609	0.0010685	2.4267	0.0010537	434.1967914185068	24.663	0.6543	24.488	24.296	24.95	-0.17484					19	14	2	0	0	0	0.027866	1	1077	1077		68.485	0	1	124880			6134	7416	3794	3809	7768	7768					-0.06152230821385274
DDPFGVFIL	9	Unmodified	_DDPFGVFIL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7618408203125	2	511.7633	1021.51205	-0.27437	-0.00014041	-3.0987	-0.0015858	-3.3731	-0.0017262	511.76170985098497	95.016	0.95473	94.864	94.406	95.361	-0.15186					46	21	3	0	0	0	0.52323	1	11716	11716		57.811	7.7867	1	269430			6135	7239	3795	3810	7769	7769					0.0021524932039937994
DDPFGVFIL	9	Unmodified	_DDPFGVFIL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.7633	1021.51205	-0.29226	-0.00014957	-2.8698	-0.0014687	-3.1621	-0.0016182	511.7612521235253	94.738	0.77396	94.738	94.362	95.136	0	-0.034675	0.00051063	NaN	57.811	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198420			6136	7239	3795	3810							0.0021524932039937994
DDPFGVFIL	9	Unmodified	_DDPFGVFIL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.7633	1021.51205	-0.093897	-4.8053E-05	-3.5229	-0.0018029	-3.6168	-0.001851	511.7611588810671	94.716	0.65224	94.716	94.389	95.041	-0.00023651	-0.057173	-0.00015787	NaN	57.811	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195830			6137	7239	3795	3810							0.0021524932039937994
DDPFGVFIL	9	Unmodified	_DDPFGVFIL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.7633	1021.51205	-0.46598	-0.00023847	-2.5168	-0.001288	-2.9828	-0.0015265	511.7614456953369	94.694	1.0147	94.698	94.168	95.183	0.0041199	-0.074772	0.00087191	NaN	57.811	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269210			6138	7239	3795	3810							0.0021524932039937994
DDPILNNKN	9	Unmodified	_DDPILNNKN_					0	0	0			REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.747314453125	2	521.76182	1041.50909	-0.028673	-1.4961E-05	-1.0775	-0.0005622	-1.1062	-0.00057717	522.2628721857702	36.767	0.11823	36.55	36.491	36.61	-0.21661					4	2	2	0	0	0	0.024436	1	2902	2902		30.504	0	1	41785	+		6139	20701	3796	3811	7770	7770					-0.01000625804408628
DDPNWKLNY	9	Unmodified	_DDPNWKLNY_					0	0	0			REV__ENSG00000138435|ENST00000348749|CHRNA1	REV__ENSG00000138435|ENST00000348749|CHRNA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.2861328125	2	582.769645	1163.52474	-0.58786	-0.00034259	0.51988	0.00030297	-0.067984	-3.9619E-05	582.769439846192	83.198	1.1485	83.059	82.696	83.844	-0.1386					35	26	2	0	0	0	0.024209	1	10120	10120		56.721	0	1	165270	+		6140	19411	3797	3812	7771	7771					-0.05048339287372983
DDQGVILLI	9	Unmodified	_DDQGVILLI_					0	0	0			REV__ENSG00000177465|ENST00000326303|ACOT4	REV__ENSG00000177465|ENST00000326303|ACOT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.28546142578125	2	493.281857	984.549162	0.072333	3.568E-05	0.058353	2.8784E-05	0.13069	6.4465E-05	493.2816551507724	71.191	1.0766	70.934	70.607	71.684	-0.25713					51	25	3	0	0	0	0.39228	1	8331	8331		66.429	0.6261	1	2067100	+		6141	27115	3798	3813	7772	7772					0.056269208661547054
DDQPLTISDA	10	Unmodified	_DDQPLTISDA_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.2664794921875	2	537.751118	1073.48768	-0.067048	-3.6055E-05	3.969	0.0021343	3.902	0.0020983	537.7531305970779	32.779	0.44379	32.587	32.335	32.779	-0.19261					18	10	2	0	0	0	0.03519	1	2250	2250		18.262	0	1	162710	+		6142	21097	3799	3814	7773	7773					-0.04612055623783817
DDQRQRLI	8	Unmodified	_DDQRQRLI_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.834228515625	2	522.283254	1042.55196	-0.72732	-0.00037987	1.3471	0.00070358	0.6198	0.00032371	522.2840121215921	69.274	0.63402	69.274	68.789	69.423	0					30	16	3	0	0	0	0.027866	1	8357	8357		47.916	0	1	1257400	+		6143	21331	3800	3815	7774	7774					0.032381890436681715
DDRDDGVDYW	10	Unmodified	_DDRDDGVDYW_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	419.16595458984375	3	419.166913	1254.47891	0.27747	0.00011631	-2.7041	-0.0011335	-2.4266	-0.0010171	419.1657510041477	22.929	0.82618	22.727	22.453	23.279	-0.20193					55	17	6	0	0	0	0.83648	1	856	856		58.246	18.188	1	985490			6144	1005	3801	3816	7775	7775					-0.13815029260285883
DDRDDGVDYW	10	Unmodified	_DDRDDGVDYW_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	419.1658020019531	3	419.166913	1254.47891	-0.36715	-0.0001539	-2.1318	-0.00089359	-2.499	-0.0010475	419.16599637928084	23.115	0.6369	22.933	22.603	23.24	-0.18184					39	13	5	0	0	0	0.64214	1	875	875		72.243	32.185	1	1097700			6145	1005	3801	3816	7776	7776					-0.13815029260285883
DDRKRSRSV	9	Unmodified	_DDRKRSRSV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7576904296875	2	559.804885	1117.59522	0.11732	6.5679E-05	-1.5155	-0.0008484	-1.3982	-0.00078272	559.8025458790896	71.608	0.36742	71.333	71.144	71.511	-0.27509					11	8	2	0	0	0	0.024466	1	8382	8382		18.262	6.0554	1	86161			6146	4316	3802	3817	7777	7777					0.041123788209461054
DDRKRSRSV	9	Unmodified	_DDRKRSRSV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	559.804885	1117.59522	0.38625	0.00021623	2.1805	0.0012207	2.5668	0.0014369	559.8052653304612	71.632	0.49205	71.632	71.377	71.869	0	0.098458	-0.00088618	NaN	18.262	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107070			6147	4316	3802	3817							0.041123788209461054
DDRKRSRSV	9	Unmodified	_DDRKRSRSV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	559.804885	1117.59522	0.17135	9.5924E-05	4.8488	0.0027144	5.0202	0.0028103	559.8074218775714	71.924	0.45409	71.635	71.234	71.688	-0.28858	0.10176	0.0021013	NaN	18.262	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198770			6148	4316	3802	3817							0.041123788209461054
DDSDDEEDT	9	Unmodified	_DDSDDEEDT_					0	0	0		ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant	ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.7662963867188	2	520.662363	1039.31017	-1.1532	-0.00060041	3.4719	0.0018077	2.3187	0.0012073	520.6645229815	47.413	0.10086	47.472	47.389	47.489	0.059097					4	2	2	0	0	0	0.024477	1	4690	4690		20.947	10.081	1	47938			6149	126	3803	3818	7778	7778					-0.20790975684462865
DDSDIRKML	9	Oxidation (M)	_DDSDIRKM(Oxidation (M))L_		DDSDIRKM(1)L		DDSDIRKM(96)L	0	0	1		nc|ENSG00000206203|Q96PF2|TSSK2	nc|ENSG00000206203|Q96PF2|TSSK2	nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.7662353515625	2	554.768788	1107.52302	-0.32601	-0.00018086	-3.6811	-0.0020421	-4.0071	-0.002223	554.7669365210387	53.117	0.61273	53.213	52.98	53.592	0.095669					44	16	4	0	0	0	0.16468	1	5658	5658		96.19	21.147	1	4159400			6150	18676	3804	3819	7779	7779		592			-0.026437163676291675
DDSDKNENL	9	Unmodified	_DDSDKNENL_					0	0	0		ENSG00000186487|ENST00000647738|MYT1L;nc|ENSG00000186487|Q9UL68-4|MYT1L	ENSG00000186487|ENST00000647738|MYT1L	ENSG00000186487|ENST00000647738|MYT1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7826538085938	2	525.222725	1048.4309	-0.014201	-7.4589E-06	-4.4531	-0.0023388	-4.4673	-0.0023463	525.2192364296235	49.931	0.32845	49.652	49.547	49.875	-0.27977					12	8	2	0	0	0	0.024447	1	5031	5031		19.104	3.0967	1	77226			6151	9555	3805	3820	7780	7780					-0.09138103180316648
DDSIRRPV	8	Unmodified	_DDSIRRPV_					0	0	0			REV__nc|ENSG00000124813|Q13950-2|RUNX2	REV__nc|ENSG00000124813|Q13950-2|RUNX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7355651855469	2	479.259248	956.503943	-0.70301	-0.00033692	-3.2853	-0.0015745	-3.9883	-0.0019114	479.25761817245296	60.283	1.6359	60.106	59.777	61.413	-0.1761					52	40	2	0	0	0	0.027866	1	6701	6701		24.519	10.744	1	168660	+		6152	22792	3806	3821	7781	7781					0.023951151236246915
DDSIRRPVD	9	Unmodified	_DDSIRRPVD_					0	0	0			REV__nc|ENSG00000124813|Q13950-2|RUNX2	REV__nc|ENSG00000124813|Q13950-2|RUNX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8033447265625	2	536.772719	1071.53089	-0.79512	-0.0004268	-3.8549	-0.0020692	-4.6501	-0.002496	536.7713145464219	66.045	0.19153	66.075	66.006	66.197	0.030106					6	4	2	0	0	0	0.024261	1	7782	7782		45.972	3.5761	1	111870	+		6153	22792	3807	3822	7782	7782					-0.002018210558617284
DDSPVNNSL	9	Unmodified	_DDSPVNNSL_					0	0	0			REV__ENST00000519920.1_1_8:132996397-133013042:+|nuORF	REV__ENST00000519920.1_1_8:132996397-133013042:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7311096191406	2	480.717079	959.419604	-0.047276	-2.2726E-05	0.56407	0.00027116	0.5168	0.00024843	480.71714804841054	31.716	0.43905	31.716	31.591	32.03	0					15	10	2	0	0	0	0.024205	1	2178	2178		63.306	17.334	1	77360	+		6154	23262	3808	3823	7783	7783					-0.06172880483802601
DDSQNEDSM	9	Unmodified	_DDSQNEDSM_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.765625	2	520.677293	1039.34003	-0.72451	-0.00037723	0.51115	0.00026614	-0.21336	-0.00011109	520.6781764781089	47.447	0.10263	47.447	47.361	47.464	0					4	2	2	0	0	0	0.024473	1	4759	4759		41.427	22.067	1	66090			6155	5446	3809	3824	7784	7784					-0.17806315220104807
DDSSSIACNY	10	Unmodified	_DDSSSIACNY_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7017211914062	2	537.705854	1073.39715	-0.51521	-0.00027703	-4.0323	-0.0021682	-4.5475	-0.0024452	537.7035957802727	89.107	1.1427	88.979	88.617	89.76	-0.12775					67	26	4	0	0	0	1.0271	1	10903	10903		42.396	0	1	1740700	+		6156	25532	3810	3825	7785	7785					-0.13660847943742738
DDSSSIACNY	10	Unmodified	_DDSSSIACNY_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.701416015625	2	537.705854	1073.39715	-0.54796	-0.00029464	-3.9384	-0.0021177	-4.4863	-0.0024123	537.703639781623	89.133	1.1856	88.995	88.692	89.877	-0.13761					61	27	3	0	0	0	1.0271	1	10894	10894		42.396	6.7778	1	1577600	+		6157	25532	3810	3825	7786	7786					-0.13660847943742738
DDSTYVDITY	10	Unmodified	_DDSTYVDITY_					0	0	0		ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.2547607421875	2	596.256234	1190.49791	-0.57906	-0.00034527	1.5488	0.00092346	0.9697	0.00057819	596.2568779046284	69.88	0.78657	69.629	69.317	70.103	-0.25063					64	18	5	0	0	0	0.941	1	8137	8137		51.335	7.2187	1	2122200			6158	6835	3811	3826	7787	7787					-0.08971492689215665
DDTGEMVLL	9	Unmodified	_DDTGEMVLL_					0	0	0			REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.77655029296875	2	496.733883	991.453213	-0.80385	-0.0003993	3.3014	0.0016399	2.4975	0.0012406	496.7354700796555	27.876	0.23795	27.707	27.57	27.808	-0.16816					7	5	2	0	0	0	0.024294	1	1585	1585		45.952	16.802	1	47249	+		6159	21237	3812	3827	7788	7788					-0.042855950362422846
DDTLHWKKY	9	Unmodified	_DDTLHWKKY_					0	0	0		ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	604.2847290039062	2	603.301113	1204.58767	-0.45935	-0.00027713	2.3467	0.0014158	1.8874	0.0011387	603.8042822195034	62.324	0.15862	62.065	61.977	62.135	-0.25824					6	3	2	0	0	0	0.024409	1	6983	6983		34.173	0	1	95174			6160	4543	3813	3828	7789	7789					-0.006437734993369304
DDTRLFQV	8	Unmodified	_DDTRLFQV_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.26556396484375	2	497.253631	992.49271	-0.53343	-0.00026525	0.85915	0.00042722	0.32572	0.00016197	497.2538354824149	37.698	0.55259	37.698	37.45	38.003	0					22	15	2	0	0	0	0.027866	1	3085	3085		31.955	0	1	432260	+		6161	28147	3814	3829	7790	7790					-0.003837069705241447
DDVDVAYFL	9	Unmodified	_DDVDVAYFL_					0	0	0			REV__ENSG00000013561|ENST00000394520|RNF14	REV__ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.23876953125	2	528.747847	1055.48114	-0.7717	-0.00040804	1.5432	0.00081596	0.77148	0.00040792	528.7490407018732	67.3	0.40198	67.3	67.088	67.49	0					25	9	4	0	0	0	0.024	1	8020	8020		76.847	28.931	1	435180	+		6162	19959	3815	3830	7791	7791					-0.04437948784516266
DDVILQKPQ	9	Unmodified	_DDVILQKPQ_					0	0	0			REV__ENSG00000164056|ENST00000651917|SPRY1	REV__ENSG00000164056|ENST00000651917|SPRY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2892456054688	2	528.290214	1054.56587	-0.29927	-0.0001581	3.5699	0.0018859	3.2706	0.0017278	528.2918807671563	57.216	0.48733	57.311	56.978	57.465	0.095306					20	12	2	0	0	0	0.024427	1	6355	6355		42.396	3.59	1	618170	+		6163	25681	3816	3831	7792	7792					0.040774217520947786
DDVKLLFII	9	Unmodified	_DDVKLLFII_					0	0	0			REV__ENSG00000136982|ENST00000313655|DSCC1	REV__ENSG00000136982|ENST00000313655|DSCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3241577148438	2	538.323525	1074.6325	-0.64217	-0.0003457	-0.76216	-0.00041029	-1.4043	-0.00075599	538.3217849734116	100.84	0.26031	100.85	100.7	100.96	0.0090256					12	5	3	0	0	0	0.72494	1	12880	12880		44.377	0.26039	1	97058	+		6164	23714	3817	3832	7793	7793					0.09816657313990618
DDVPFALLL	9	Unmodified	_DDVPFALLL_					0	0	0			REV__nc|ENSG00000187260|Q86TI4-1|WDR86	REV__nc|ENSG00000187260|Q86TI4-1|WDR86	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.29461669921875	2	501.778951	1001.54335	0.45036	0.00022598	-4.0123	-0.0020133	-3.5619	-0.0017873	501.7767223563276	53.983	0.58208	54.081	53.876	54.458	0.098015					25	15	2	0	0	0	0.024354	1	5779	5779		30.504	6.3009	1	718380	+		6165	37034	3818	3833	7794	7794					0.04263822354482727
DDVSWLGHNR	10	Unmodified	_DDVSWLGHNR_					0	0	0			REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	3	400.191504	1197.55268	2.167	0.00086722	1.824	0.00072996	3.991	0.0015972	400.1922033974878	21.745	0.4362	21.817	21.591	22.028	0.071487					12	8	2	0	0	0	0.03519	1	676	676		23.378	0	1	14573	+		6166	37132	3819	3834	7795	7795					-0.03819016307284073
DDWAFSPQI	9	Unmodified	_DDWAFSPQI_					0	0	0		ENST00000497858.1_1_1:38027642-38030659:+|nuORF	ENST00000497858.1_1_1:38027642-38030659:+|nuORF	ENST00000497858.1_1_1:38027642-38030659:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.29736328125	2	539.745639	1077.47673	-1.2447	-0.0006718	-1.7174	-0.00092697	-2.9621	-0.0015988	539.7445451150036	64.576	0.44977	64.314	64.083	64.532	-0.2626					14	11	2	0	0	0	0.024447	1	7548	7548		32.812	1.2826	1	115060			6167	15605	3820	3835	7796	7796					-0.058914132074278314
DDWERVHKG	9	Unmodified	_DDWERVHKG_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.822021484375	2	571.272887	1140.53122	-0.24345	-0.00013907	-0.48877	-0.00027922	-0.73222	-0.0004183	571.273041543436	52.122	0.74866	51.974	51.577	52.326	-0.14735					48	20	4	0	0	0	0.024405	1	5522	5522		27.882	0	1	249180			6168	6479	3821	3836	7797	7797					-0.03342401335999057
DDYCERCEYM	10	Unmodified	_DDYCERCEYM_					0	0	0			REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.2906188964844	3	442.819363	1325.43626	-0.98874	-0.00043783	3.0841	0.0013657	2.0953	0.00092784	442.8206697886297	44.284	0.42204	44.04	43.904	44.326	-0.2444					16	11	2	0	0	0	0.03519	1	4156	4156		7.3997	0.38104	1	178090	+		6169	19639	3822	3837	7798	7798					-0.21344206976027635
DDYCERCEYM	10	Unmodified	_DDYCERCEYM_					0	0	0			REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	442.819363	1325.43626	-1.0142	-0.00044909	3.1503	0.001395	2.1362	0.00094593	442.82063357723206	44.183	0.38643	44.078	43.853	44.239	-0.10468	0.019259	3.7583E-05	NaN	11.636	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193910	+		6170	19639	3822	3837							-0.21344206976027635
DEAAAGLVL	9	Unmodified	_DEAAAGLVL_					0	0	0			REV__ENSG00000121743|ENST00000241125|GJA3	REV__ENSG00000121743|ENST00000241125|GJA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.5304870605469	2	429.732	857.449448	2.2047	0.00094743	2.8439	0.0012221	5.0486	0.0021695	429.73208978259356	23.545	0.77714	23.354	23.284	24.061	-0.19117					19	17	2	0	0	0	0.024443	1	916	916		12.959	4.7279	1	53898	+		6171	22604	3823	3838	7799	7799					0.015021032521872257
DEAAAQPLNL	10	Unmodified	_DEAAAQPLNL_					0	0	0		nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000110693|P35712-4|SOX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8104858398438	2	521.264196	1040.51384	-0.63956	-0.00033338	2.7356	0.001426	2.096	0.0010926	521.2660282476103	54.071	0.41343	54.071	53.872	54.285	0					19	11	2	0	0	0	0.03519	1	5864	5864		24.519	4.0374	1	233400			6172	3055	3824	3839	7800	7800					-0.004797416616611372
DEAALPVLCIC	11	Unmodified	_DEAALPVLCIC_					0	0	0		ABHD15|p.V350L|1|0.16|ENSG00000168792|chr17:29562920-29562920|C/A|missense_variant	ABHD15|p.V350L|1|0.16|ENSG00000168792|chr17:29562920-29562920|C/A|missense_variant	ABHD15|p.V350L|1|0.16|ENSG00000168792|chr17:29562920-29562920|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.3001098632812	2	573.78031	1145.54607	-0.45261	-0.0002597	3.7375	0.0021445	3.2849	0.0018848	573.782077468696	67.171	1.6607	66.932	66.646	68.307	-0.2392					75	41	3	0	0	0	0.024732	1	7819	7819		19.104	0	1	448830			6173	9	3825	3840	7801	7801					-0.020884135745518506
DEAGGLLSLD	10	Unmodified	_DEAGGLLSLD_					0	0	0			REV__ENST00000599889.1_1_19:58877464-58877869:+|nuORF	REV__ENST00000599889.1_1_19:58877464-58877869:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.31536865234375	2	495.242929	988.471305	-0.82448	-0.00040832	1.9695	0.0009754	1.1451	0.00056708	495.24368082201323	81.169	0.67889	81.038	80.741	81.42	-0.13075					40	16	3	0	0	0	0.03519	1	10050	10050		49.442	1.7842	1	838670	+		6174	35833	3826	3841	7802	7802					-0.023391367898966564
DEAGLHPPAL	10	Unmodified	_DEAGLHPPAL_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2756042480469	2	510.261456	1018.50836	0.36829	0.00018792	-1.3039	-0.00066532	-0.93559	-0.0004774	510.2605884813919	70.324	0.37177	70.324	70.241	70.613	0					10	8	2	0	0	0	0.03519	1	8534	8534		65.803	23.407	1	388920			6175	3034	3827	3842	7803	7803					-0.00015420453485148755
DEAGLHPPAL	10	Unmodified	_DEAGLHPPAL_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.27471923828125	2	510.261456	1018.50836	0.78016	0.00039808	-0.49308	-0.0002516	0.28707	0.00014648	510.26095018522574	70.629	0.69861	70.336	70.219	70.918	-0.29292					24	17	2	0	0	0	0.03519	1	8542	8542		37.159	0	1	303100			6176	3034	3827	3842	7804	7804					-0.00015420453485148755
DEAIIEWRTS	10	Unmodified	_DEAIIEWRTS_					0	0	0			REV__ENSG00000178913|ENST00000313368|TAF7	REV__ENSG00000178913|ENST00000313368|TAF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	609.3172607421875	2	610.30131	1218.58807	-0.64785	-0.00039538	3.0581	0.0018664	2.4103	0.001471	610.3030203254258	40.077	0.60477	40.077	39.843	40.448	0					30	16	3	0	0	0	0.03519	1	3509	3509		25.574	0	1	448770	+		6177	27213	3828	3843	7805	7805					-0.012483985701464917
DEAKPQALP	9	Unmodified	_DEAKPQALP_					0	0	0			REV__nc|ENSG00000138798|P01133-2|EGF	REV__nc|ENSG00000138798|P01133-2|EGF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7586975097656	2	484.756007	967.497461	4.9567	0.0024028	-0.0039644	-1.9218E-06	4.9528	0.0024009	484.75587473030123	17.18	0.32546	17.24	17.104	17.429	0.06036					15	10	2	0	0	0	0.80658	1	112	112		38.806	6.8513	1	47413	+		6178	23905	3829	3844	7806	7806					0.01241177172244079
DEAKPQALP	9	Unmodified	_DEAKPQALP_					0	0	0			REV__nc|ENSG00000138798|P01133-2|EGF	REV__nc|ENSG00000138798|P01133-2|EGF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.756007	967.497461	3.4101	0.0016531	1.8319	0.00088801	5.242	0.0025411	484.75670912117033	17.127	0.26167	17.127	16.989	17.25	0	-0.03194	0.00023739	NaN	38.806	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29286	+		6179	23905	3829	3844							0.01241177172244079
DEAKPQALP	9	Unmodified	_DEAKPQALP_					0	0	0			REV__nc|ENSG00000138798|P01133-2|EGF	REV__nc|ENSG00000138798|P01133-2|EGF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	484.756007	967.497461	0.36891	0.00017883	4.4439	0.0021542	4.8128	0.002333	484.75798906802964	17.252	0.2525	17.109	16.977	17.229	-0.14278	-0.049289	0.0027698	NaN	38.806	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27970	+		6180	23905	3829	3844							0.01241177172244079
DEALAILAKL	10	Unmodified	_DEALAILAKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.7628173828125	2	528.818607	1055.62266	-0.91721	-0.00048504	2.067	0.0010931	1.1498	0.00060803	529.3217683882341	82.722	0.81672	82.722	82.321	83.138	0					49	18	4	0	0	0	0.03519	1	10385	10385		39.253	3.6345	1	433470			6181	3841	3830	3845	7807	7807					0.09707469308614236
DEALPASGAR	10	Unmodified	_DEALPASGAR_					0	0	0			REV__ENSG00000141639|ENST00000400384|MAPK4	REV__ENSG00000141639|ENST00000400384|MAPK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7721252441406	2	493.748713	985.482873	-0.24278	-0.00011987	-0.44566	-0.00022004	-0.68844	-0.00033992	493.74842034807307	33.582	0.4902	33.582	33.287	33.777	0					23	13	2	0	0	0	0.03519	1	2396	2396		31.53	0	1	322050	+		6182	24113	3831	3846	7808	7808					-0.010448949758938397
DEALQAKIS	9	Unmodified	_DEALQAKIS_					0	0	0		sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7623291015625	2	487.761289	973.508025	0.074742	3.6456E-05	0.062119	3.0299E-05	0.13686	6.6755E-05	487.7612513394715	36.912	0.90719	36.848	36.508	37.415	-0.063385					76	23	6	0	0	0	0.56934	1	2967	2967		54.776	1.8396	1	5305800			6183	37943	3832	3847	7809	7809					0.02021159826665553
DEALRLIFL	9	Unmodified	_DEALRLIFL_					0	0	0			REV__ENSG00000081026|ENST00000307546|MAGI3	REV__ENSG00000081026|ENST00000307546|MAGI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3163452148438	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.62163	1	10837	10837		51.335	10.557	1	3635800	+		6184	20671	3833	3848	7810	7810					0.08222889028479585
DEALRRILEL	10	Unmodified	_DEALRRILEL_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y;REV__USP9X-BLVRB|1|fusion	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.8864440917969	3	409.906705	1226.69829	0.10672	4.3747E-05	0.15142	6.207E-05	0.25815	0.00010582	409.9063978477411	34.477	0.27715	34.527	34.404	34.682	0.050255					9	6	2	0	0	0	0.03519	1	2503	2503		59.931	8.403	1	31744	+		6185	22118;37773	3834	3849	7811	7811					0.09400446488916714
DEALRRRLEKR	11	Unmodified	_DEALRRRLEKR_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1	nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.28314208984375	3	481.283057	1440.82734	-0.010732	-5.1652E-06	0.96542	0.00046464	0.95469	0.00045948	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.09	1	12981	12981		14.086	0	1	1064100			6186	9565;2427	3835	3850	7812	7812					0.1245622117169205
DEAPLRYY	8	Unmodified	_DEAPLRYY_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2965698242188	2	513.748182	1025.48181	-0.39114	-0.00020095	-4.1128	-0.002113	-4.504	-0.0023139	513.7457473213944	85.536	0.66312	85.478	84.98	85.643	-0.05761					25	15	2	0	0	0	0.027866	1	10693	10693		42.474	19.432	1	112140	+		6187	20920	3836	3851	7813	7813					-0.029911093447935855
DEAPQDEPL	9	Unmodified	_DEAPQDEPL_					0	0	0			REV__ENST00000368037.9_1_1:160784435-160786426:+|nuORF	REV__ENST00000368037.9_1_1:160784435-160786426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7682189941406	2	507.224736	1012.43492	-1.08	-0.00054782	2.1901	0.0011109	1.1101	0.00056307	507.2256224204493	60.6	0.70245	60.6	60.294	60.996	0					41	18	3	0	0	0	0.023655	1	7004	7004		79.713	47.758	1	1083100	+		6188	31042	3837	3852	7814	7814					-0.07080013686618258
DEAPQDEPL	9	Unmodified	_DEAPQDEPL_					0	0	0			REV__ENST00000368037.9_1_1:160784435-160786426:+|nuORF	REV__ENST00000368037.9_1_1:160784435-160786426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.76800537109375	2	507.224736	1012.43492	-1.7028	-0.0008637	2.6604	0.0013494	0.95764	0.00048574	507.22586591564584	60.507	0.638	60.586	60.28	60.918	0.078888					42	16	3	0	0	0	0.0242	1	6897	6897		69.628	18.292	1	950940	+		6189	31042	3837	3852	7815	7815					-0.07080013686618258
DEARVTLIY	9	Unmodified	_DEARVTLIY_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.2899780273438	2	540.290214	1078.56587	-0.56828	-0.00030704	-0.31505	-0.00017022	-0.88333	-0.00047725	540.2900910186012	66.468	0.72925	66.22	65.782	66.511	-0.24839					70	19	6	0	0	0	0.20967	2	7609	7609;7621		87.754	0.057861	1	20270000	+		6190	28136	3838	3853	7816;7817	7816					0.02973421752108152
DEARVTLIY	9	Unmodified	_DEARVTLIY_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.2904663085938	2	540.290214	1078.56587	-0.87513	-0.00047282	0.10246	5.5356E-05	-0.77267	-0.00041747	540.2903040834815	66.426	0.73415	66.202	65.824	66.558	-0.22374					72	19	6	0	0	0	0.53979	1	7636	7636		56.721	4.4219	1	21277000	+		6191	28136	3838	3853	7818	7818					0.02973421752108152
DEAVLFVQV	9	Unmodified	_DEAVLFVQV_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.2796936035156	2	510.274032	1018.53351	-1.3871	-0.00070779	0.7868	0.00040148	-0.60028	-0.00030631	510.27443324848696	90.53	2.2009	90.53	90.093	92.294	0					131	52	4	0	0	0	0.13494	1	11532	11532		102.77	8.7669	1	32708000			6192	9391	3839	3854	7819	7819					0.024986343491036678
DEAVLFVQV	9	Unmodified	_DEAVLFVQV_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2737121582031	2	510.274032	1018.53351	0.071912	3.6695E-05	-0.57535	-0.00029359	-0.50344	-0.00025689	510.2737196623369	90.544	2.1866	90.557	90.161	92.347	0.013443					125	52	4	0	0	0	0.11092	1	11346	11346		108.09	8.7125	1	33874000			6193	9391	3839	3854	7820	7820					0.024986343491036678
DEAVLFVQV	9	Unmodified	_DEAVLFVQV_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2738342285156	2	510.274032	1018.53351	-0.81994	-0.00041839	1.1592	0.00059152	0.33928	0.00017312	510.2742331992619	90.567	1.5871	90.442	90.127	91.714	-0.12513					81	37	4	0	0	0	0.072054	1	11117	11117		120.62	3.7174	1	6003600			6194	9391	3839	3854	7821	7821					0.024986343491036678
DEAWEQSRA	9	Unmodified	_DEAWEQSRA_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034-2|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.323974609375	2	546.241252	1090.46795	-0.40167	-0.00021941	-2.4197	-0.0013217	-2.8214	-0.0015412	546.2398027358961	68.263	0.37434	68.282	68.198	68.573	0.018921					16	9	2	0	0	0	0.024418	1	8105	8105		23.523	0	1	519060			6195	1238;18054	3840	3855	7822	7822					-0.07366386843887085
DECKHIVSGY	10	Unmodified	_DECKHIVSGY_					0	0	0			REV__nc|ENSG00000116809|Q13105-2|ZBTB17	REV__nc|ENSG00000116809|Q13105-2|ZBTB17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8433227539062	2	575.763506	1149.51246	-0.56095	-0.00032298	1.1517	0.00066313	0.59079	0.00034016	575.7643331234518	91.957	0.43422	91.835	91.587	92.021	-0.12242					13	9	2	0	0	0	0.03519	1	11265	11265		31.53	0	1	36663	+		6196	36593	3841	3856	7823	7823					-0.05631699022046632
DEDDREIY	8	Unmodified	_DEDDREIY_					0	0	0		ENST00000557184.1_1_14:54976944-54997777:+|nuORF;ENST00000556216.5_1_14:54997446-55005098:+|nuORF;ENSG00000100532|ENST00000216420|CGRRF1	ENST00000557184.1_1_14:54976944-54997777:+|nuORF	ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7698974609375	2	527.719818	1053.42508	0.13028	6.875E-05	3.6019	0.0019008	3.7322	0.0019696	527.7216842104314	48.209	0.36607	48.022	47.863	48.229	-0.18684					14	9	2	0	0	0	0.027866	1	4743	4743		38.806	6.8513	1	166330			6197	2214	3842	3857	7824	7824					-0.09949201691983944
DEDDTADL	8	Unmodified	_DEDDTADL_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.2395324707031	2	447.17217	892.329786	-0.031802	-1.4221E-05	-0.17682	-7.9069E-05	-0.20862	-9.3291E-05	447.17226147282634	54.542	0.17381	54.297	54.198	54.372	-0.2453					6	4	2	0	0	0	0.027866	1	5805	5805		47.916	0	1	39999			6198	1890	3843	3858	7825	7825					-0.12068554883035176
DEDEDEETF	9	Unmodified	_DEDEDEETF_					0	0	0		nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;nc|ENSG00000068137|Q7Z736-4|PLEKHH3;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;ENSG00000068137|ENST00000591022|PLEKHH3	nc|ENSG00000068137|Q7Z736-2|PLEKHH3	nc|ENSG00000068137|Q7Z736-2|PLEKHH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7225341796875	2	564.696206	1127.37786	-0.2659	-0.00015015	2.6315	0.001486	2.3656	0.0013358	564.6972428524305	49.383	0.19387	49.283	49.107	49.301	-0.1008					7	4	2	0	0	0	0.024436	1	4937	4937		38.806	1.647	1	232440			6199	17357	3844	3859	7826	7826					-0.18073525753652575
DEDFCQNL	8	Unmodified	_DEDFCQNL_					0	0	0		ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2668762207031	2	492.192382	982.370211	0.20279	9.9809E-05	-1.5163	-0.00074631	-1.3135	-0.00064651	492.1934167200392	36.986	0.11326	36.922	36.828	36.941	-0.063385					4	2	2	0	0	0	0.027866	1	2965	2965		57.811	0	1	33466			6200	3801	3845	3860	7827	7827					-0.12167911764242945
DEDFIHTV	8	Unmodified	_DEDFIHTV_					0	0	0		ATP10D|p.D484H|1|0.47|ENSG00000145246|chr4:47546677-47546677|G/C|missense_variant	ATP10D|p.D484H|1|0.47|ENSG00000145246|chr4:47546677-47546677|G/C|missense_variant	ATP10D|p.D484H|1|0.47|ENSG00000145246|chr4:47546677-47546677|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2588806152344	2	488.224539	974.434526	-0.1863	-9.0956E-05	-3.4994	-0.0017085	-3.6857	-0.0017994	488.22315649391487	41.57	0.25042	41.446	41.361	41.612	-0.12317					10	6	2	0	0	0	0.027866	1	3746	3746		42.474	0.078325	1	81126			6201	148	3846	3861	7828	7828					-0.05371388615799333
DEDLLLNEI	9	Unmodified	_DEDLLLNEI_					0	0	0			REV__ENSG00000142149|ENST00000270112|HUNK	REV__ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3074951171875	2	537.271687	1072.52882	-0.30807	-0.00016552	2.2848	0.0012275	1.9767	0.001062	537.2726250603645	68.318	0.89201	68.025	67.588	68.48	-0.29267					34	22	2	0	0	0	0.022832	1	8180	8180		93.195	19.221	1	190850	+		6202	24134	3847	3862	7829	7829					-0.0045429458432408865
DEDPAAQVQF	10	Unmodified	_DEDPAAQVQF_					0	0	0			REV__ENSG00000132604|ENST00000254942|TERF2	REV__ENSG00000132604|ENST00000254942|TERF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.285888671875	2	560.251286	1118.48802	-0.72371	-0.00040546	-0.77465	-0.000434	-1.4984	-0.00083946	560.2501054689305	40.037	0.42343	39.806	39.623	40.046	-0.23021					16	10	2	0	0	0	0.03519	1	3401	3401		23.523	0	1	93755	+		6203	23298	3848	3863	7830	7830					-0.06648635903957256
DEDQGRDPQR	10	Unmodified	_DEDQGRDPQR_					0	0	0			REV__ENST00000554116.5_1_16:89989841-89998252:+|nuORF	REV__ENST00000554116.5_1_16:89989841-89998252:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.587158203125	3	405.849807	1214.52759	-0.56589	-0.00022967	-1.5399	-0.00062499	-2.1058	-0.00085466	405.84902807548445	25.919	1.2712	25.756	24.651	25.922	-0.16331					39	30	2	0	0	0	0.03519	1	1131	1131		27.644	0	1	136420	+		6204	34981	3849	3864	7831	7831					-0.07109115900539109
DEDQPQPPY	9	Unmodified	_DEDQPQPPY_					0	0	0		ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.24755859375	2	544.730186	1087.44582	-0.7648	-0.00041661	1.9307	0.0010517	1.1659	0.00063509	544.7310078780565	52.077	0.60259	51.958	51.719	52.322	-0.11876					32	15	3	0	0	0	0.024427	1	5429	5429		19.997	0	1	640250			6205	5599	3850	3865	7832	7832					-0.09440611312334113
DEDSQDLR	8	Unmodified	_DEDSQDLR_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2518005371094	2	489.21216	976.409768	-0.59724	-0.00029218	-1.385	-0.00067755	-1.9822	-0.00096972	489.21134614292566	73.311	0.36527	73.311	73.072	73.438	0					11	9	2	0	0	0	0.027866	1	8946	8946		53.351	0	1	154320	+		6206	20051	3851	3866	7833	7833					-0.0793806848918166
DEDTHNWWHLD	11	Unmodified	_DEDTHNWWHLD_					0	0	0			REV__ENST00000450317.1_1_7:90261387-90261723:+|nuORF	REV__ENST00000450317.1_1_7:90261387-90261723:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.23736572265625	3	489.868979	1466.58511	-0.81538	-0.00039943	-3.0113	-0.0014752	-3.8267	-0.0018746	489.8671420120434	35.57	0.28087	35.355	35.176	35.457	-0.21556					9	6	2	0	0	0	0.024779	1	2689	2689		11.932	0	1	39964	+		6207	32698	3852	3867	7834	7834					-0.12952273694963878
DEDVRYRAY	9	Unmodified	_DEDVRYRAY_					0	0	0			REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8018188476562	2	593.778002	1185.54145	-0.75582	-0.00044879	3.2419	0.001925	2.4861	0.0014762	593.7799628480946	35.91	0.47331	35.694	35.507	35.981	-0.21661					28	13	3	0	0	0	0.023181	1	2735	2735		60.972	11.53	1	634410	+		6208	37002	3853	3868	7835	7835					-0.0438983840142555
DEDYLADFF	9	Unmodified	_DEDYLADFF_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.290771484375	2	567.734937	1133.45532	-0.39638	-0.00022504	-2.7967	-0.0015878	-3.1931	-0.0018128	567.7333604299054	59.969	0.47586	59.769	59.577	60.053	-0.20016					22	12	3	0	0	0	0.024506	1	6883	6883		30.504	11.4	1	352900	+		6209	22153	3854	3869	7836	7836					-0.10606843026812385
DEEDLAAR	8	Unmodified	_DEEDLAAR_					0	0	0			REV__ENST00000530490.1_1_11:17035717-17073753:+|nuORF	REV__ENST00000530490.1_1_11:17035717-17073753:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.7121276855469	2	459.711796	917.40904	-0.14797	-6.8024E-05	-2.129	-0.00097872	-2.277	-0.0010467	459.71088987969375	102.92	0.93147	102.79	102.27	103.21	-0.12783					63	21	6	0	0	0	0.97924	1	12823	12823		40.573	4.1259	1	1011900	+		6210	34540	3855	3870	7837	7837					-0.05296863138232766
DEEEAQKRA	9	Unmodified	_DEEEAQKRA_					0	0	0		nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2783813476562	2	538.25436	1074.49417	-1.1188	-0.0006022	-0.11321	-6.0935E-05	-1.232	-0.00066314	538.2543347274727	84.642	0.45592	84.569	84.468	84.924	-0.072769					12	10	2	0	0	0	0.024337	1	10609	10609		49.536	0	1	88531			6211	18544	3856	3871	7838	7838					-0.04010117672441993
DEEEEQDK	8	Unmodified	_DEEEEQDK_					0	0	0			REV__ENSG00000268043|ENST00000698835|NBPF12;REV__nc|ENSG00000269713|P0DPF3-2|NBPF9;REV__nc|ENSG00000219481|Q3BBV0|NBPF1	REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7900695800781	2	511.201458	1020.38836	-0.56416	-0.0002884	-4.3444	-0.0022208	-4.9085	-0.0025092	511.1991755792874	42.041	0.49783	41.809	41.508	42.006	-0.23186					24	13	2	0	0	0	0.027866	1	3703	3703		35.618	1.4457	1	442490	+		6212	29130;29159;37133	3857	3872	7839	7839					-0.12101498308561531
DEEEIEEEL	9	Unmodified	_DEEEIEEEL_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.829345703125	2	567.737874	1133.46119	-0.42395	-0.0002407	-1.8071	-0.001026	-2.2311	-0.0012667	567.7367202991908	64.905	1.2445	64.671	64.177	65.421	-0.2345					68	30	3	0	0	0	0.024457	1	7438	7438		37.159	0	1	1064200			6213	1890	3858	3873	7840	7840					-0.10019789305806626
DEEEIEEEL	9	Unmodified	_DEEEIEEEL_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8114013671875	2	567.737874	1133.46119	0.10629	6.0348E-05	-2.1981	-0.0012479	-2.0918	-0.0011876	567.7364633948159	70.265	1.6411	70.014	68.579	70.22	-0.25063					71	39	4	0	0	0	0.024319	1	8056	8056		66.429	0	1	547250			6214	1890	3858	3873	7841	7841					-0.10019789305806626
DEEELEKEL	9	Unmodified	_DEEELEKEL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3088989257812	2	567.264059	1132.51356	-1.1902	-0.00067517	-0.57001	-0.00032335	-1.7602	-0.00099852	567.2636938507435	69.664	0.82025	69.679	69.094	69.914	0.015121					28	20	2	0	0	0	0.016885	1	8347	8347		118.74	0	1	111240			6215	8348	3859	3874	7842	7842					-0.0473920617218937
DEEEPGLIY	9	Unmodified	_DEEEPGLIY_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7848510742188	2	532.742762	1063.47097	-0.56108	-0.00029891	-2.9183	-0.0015547	-3.4793	-0.0018536	532.7410420920735	47.037	0.47979	47.037	46.772	47.252	0					19	12	2	0	0	0	0.024412	1	4659	4659		31.955	7.7521	1	341650	+		6216	20030	3860	3875	7843	7843					-0.05822556509747301
DEEEPGLIY	9	Unmodified	_DEEEPGLIY_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.742762	1063.47097	-0.83729	-0.00044606	-2.4531	-0.0013069	-3.2904	-0.0017529	532.7411137290741	47.016	0.36716	47.075	46.88	47.247	0.059097	0.036888	0.0004168	NaN	24.203	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413730	+		6217	20030	3860	3875							-0.05822556509747301
DEEEPGLIY	9	Unmodified	_DEEEPGLIY_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.742762	1063.47097	-0.25286	-0.00013471	-2.8022	-0.0014928	-3.055	-0.0016275	532.7413332096536	47.038	0.47906	46.941	46.682	47.161	-0.096653	-0.096607	4.4841E-05	NaN	24.203	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228070	+		6218	20030	3860	3875							-0.05822556509747301
DEEEPGLIY	9	Unmodified	_DEEEPGLIY_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.742762	1063.47097	-0.23939	-0.00012754	-2.9164	-0.0015537	-3.1558	-0.0016812	532.7410148804629	47.393	0.40749	47.124	46.943	47.35	-0.26939	0.08574	-7.6902E-05	NaN	24.203	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222880	+		6219	20030	3860	3875							-0.05822556509747301
DEEEPGLIY	9	Unmodified	_DEEEPGLIY_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.742762	1063.47097	-0.43998	-0.0002344	-3.0806	-0.0016412	-3.5206	-0.0018756	532.741206039109	47.21	0.33921	47.017	46.814	47.154	-0.19387	-0.021277	-0.00025184	NaN	24.203	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195270	+		6220	20030	3860	3875							-0.05822556509747301
DEEEQRVSTLA	11	Unmodified	_DEEEQRVSTLA_					0	0	0			REV__KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	REV__KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2166748046875	3	426.205368	1275.59427	-0.14146	-6.0292E-05	1.1403	0.000486	0.99883	0.00042571	426.2054868017724	27.152	0.3747	26.91	26.744	27.119	-0.24217					14	8	2	0	0	0	0.024735	1	1476	1476		27.644	0	1	53631	+		6221	27903	3861	3876	7844	7844					-0.0324992512926201
DEEFIPVK	8	Unmodified	_DEEFIPVK_					0	0	0			REV__ENSG00000170006|ENST00000304385|TMEM154	REV__ENSG00000170006|ENST00000304385|TMEM154	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.26690673828125	2	488.752933	975.491313	-0.39632	-0.0001937	-3.8878	-0.0019002	-4.2841	-0.0020939	488.7509672302972	47.678	0.60797	47.678	47.395	48.003	0					32	18	2	0	0	0	0.027866	1	4763	4763		33.516	0	1	563960	+		6222	26427	3862	3877	7845	7845					0.002586589407201245
DEEFTAQTI	9	Unmodified	_DEEFTAQTI_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.765869140625	2	527.240386	1052.46622	0.43492	0.00022931	0.085362	4.5006E-05	0.52028	0.00027431	527.2403957888347	56.734	0.46882	56.509	56.307	56.776	-0.2248					22	11	3	0	0	0	0.024541	1	6181	6181		16.473	0	1	399230			6223	3606	3863	3878	7846	7846					-0.05791440652524216
DEEIKLRK	8	Unmodified	_DEEIKLRK_					0	0	0			REV__ENSG00000099260|ENST00000263174|PALMD	REV__ENSG00000099260|ENST00000263174|PALMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2843017578125	2	515.798206	1029.58186	1.5857	0.00081789	1.6602	0.00085632	3.2459	0.0016742	515.7987041302802	82.529	0.38773	82.419	82.294	82.682	-0.11006					13	8	2	0	0	0	0.027866	1	10270	10270		85.359	8.5128	1	24422	+		6224	20997	3864	3879	7847	7847					0.06825127989009161
DEEKHEDFVK	10	Unmodified	_DEEKHEDFVK_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2166748046875	3	425.866575	1274.5779	-0.33786	-0.00014388	-1.429	-0.00060854	-1.7668	-0.00075243	425.8658944086704	26.839	0.5041	26.597	26.45	26.954	-0.24217					14	11	2	0	0	0	0.03519	1	1476	1476		9.6461	0	1	36684	+		6225	36714	3865	3880	7848	7848					-0.04841006295396255
DEEKYRDCERF	11	Unmodified	_DEEKYRDCERF_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000494204.1_1_X:24833141-24859977:+|nuORF	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.23541259765625	3	497.21739	1488.63034	-0.55524	-0.00027607	1.4174	0.00070476	0.86216	0.00042868	497.21905374577756	30.952	0.33702	30.711	30.497	30.834	-0.24109					16	7	4	0	0	0	0.024845	1	2027	2027		6.3209	0	1	104060			6226	2354	3866	3881	7849	7849					-0.09442791224091707
DEELAKVEI	9	Unmodified	_DEELAKVEI_					0	0	0		ENSG00000198049|ENST00000367126|AVPR1B;AVPR1B|p.L140Cfs*38|1|0.11|ENSG00000198049|chr1:206116473-206116473|G/-|frameshift_variant	ENSG00000198049|ENST00000367126|AVPR1B	ENSG00000198049|ENST00000367126|AVPR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3025512695312	2	523.274229	1044.53391	-0.23645	-0.00012373	2.9975	0.0015685	2.761	0.0014448	523.2762203380498	86.9	0.45821	86.713	86.604	87.062	-0.18696					13	10	2	0	0	0	0.024025	1	10543	10543		71.877	15.156	1	79682			6227	10089	3867	3882	7850	7850					0.013420092782780557
DEELLLVAY	9	Unmodified	_DEELLLVAY_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.8207397460938	2	532.779148	1063.54374	-0.46271	-0.00024652	-3.5392	-0.0018856	-4.0019	-0.0021321	532.7771996044119	70.423	0.65389	70.166	69.56	70.213	-0.25712					24	15	2	0	0	0	0.024386	1	8122	8122		42.474	15.782	1	570710			6228	6749	3868	3883	7851	7851					0.014511972836771747
DEENDILLN	9	Unmodified	_DEENDILLN_					0	0	0		ENSG00000163832|ENST00000296149|ELP6;nc|ENSG00000163832|Q0PNE2-2|ELP6	ENSG00000163832|ENST00000296149|ELP6;nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7493896484375	2	537.751118	1073.48768	-0.85789	-0.00046133	-1.7275	-0.00092895	-2.5854	-0.0013903	537.7500461653538	76.138	0.94579	76.138	75.732	76.678	0					63	23	4	0	0	0	0.40693	1	9367	9367		65.465	6.6834	1	1474900			6229	7155;18453	3869	3884	7852	7852					-0.04612055623783817
DEEQEFEPL	9	Unmodified	_DEEQEFEPL_					0	0	0			REV__ENST00000492227.1_1_1:114939070-114940443:-|nuORF	REV__ENST00000492227.1_1_1:114939070-114940443:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.8109741210938	2	568.243126	1134.4717	0.53141	0.00030197	-0.094948	-5.3954E-05	0.43646	0.00024802	568.242923731443	71.463	0.31566	71.174	71.036	71.351	-0.28858					14	7	2	0	0	0	0.024506	1	8607	8607		16.473	0	1	263780	+		6230	28290	3870	3885	7853	7853					-0.09015761860700877
DEESESGKLD	10	Unmodified	_DEESESGKLD_					0	0	0			REV__ENST00000470278.5_1_1:151028391-151029161:-|nuORF	REV__ENST00000470278.5_1_1:151028391-151029161:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.7875366210938	2	554.735665	1107.45678	1.4302	0.0007934	3.0466	0.00169	4.4768	0.0024834	554.7371488867825	82.815	0.94274	82.705	82.422	83.365	-0.11006					36	21	3	0	0	0	0.03519	1	10284	10284		75.043	18.322	1	283190	+		6231	33151	3871	3886	7854	7854					-0.09265253728699463
DEETFFKEV	9	Unmodified	_DEETFFKEV_					0	0	0			REV__ENST00000515429.1_1_3:128598503-128612413:+|nuORF	REV__ENST00000515429.1_1_3:128598503-128612413:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2623291015625	2	572.263862	1142.51317	-0.81838	-0.00046833	-2.0249	-0.0011588	-2.8433	-0.0016271	572.2623985938371	43.323	1.3085	43.097	42.793	44.101	-0.22597					109	35	6	0	0	0	0.26966	1	3934	3934		79.713	0	1	12310000	+		6232	34199	3872	3887	7855	7855					-0.05238581101366435
DEEVLAVET	9	Unmodified	_DEEVLAVET_					0	0	0			REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7799377441406	2	502.742762	1003.47097	0.27649	0.000139	0.34464	0.00017327	0.62113	0.00031227	502.7426832584927	53.246	0.46114	52.987	52.763	53.224	-0.25838					20	11	2	0	0	0	0.024457	1	5592	5592		21.96	0	1	274700	+		6233	31857	3873	3888	7856	7856					-0.03062556509746628
DEEYEEIV	8	Unmodified	_DEEYEEIV_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2870483398438	2	513.21912	1024.42369	0.20306	0.00010421	1.8337	0.00094107	2.0367	0.0010453	513.220078412635	71.96	0.18275	71.96	71.795	71.978	0					6	4	2	0	0	0	0.027866	1	8720	8720		25.45	6.0902	1	61669			6234	18059	3874	3889	7857	7857					-0.0875483578075773
DEFDKALQI	9	Unmodified	_DEFDKALQI_					0	0	0			REV__ENSG00000161800|ENST00000312377|RACGAP1	REV__ENSG00000161800|ENST00000312377|RACGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.789794921875	2	539.774396	1077.53424	-1.2471	-0.00067317	0.88663	0.00047858	-0.36051	-0.00019459	540.2761293450343	82.849	0.38589	82.875	82.702	83.088	0.02655					12	8	2	0	0	0	0.023061	1	10286	10286		79.713	0	1	65497	+		6235	25399	3875	3890	7858	7858					-0.001425710018565951
DEFDYRGGFL	10	Unmodified	_DEFDYRGGFL_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	3	406.852377	1217.5353	-0.4208	-0.0001712	-1.5167	-0.00061708	-1.9375	-0.00078829	407.18611005627895	27.239	0.2115	27.082	26.974	27.185	-0.15664					6	4	2	0	0	0	0.03519	1	1470	1470		36.318	17.055	1	36223	+		6236	20677	3876	3891	7859	7859					-0.064763566329475
DEFICCFIS	9	Unmodified	_DEFICCFIS_					0	0	0		ENST00000417748.1_2_2:201994190-201994530:+|nuORF	ENST00000417748.1_2_2:201994190-201994530:+|nuORF	ENST00000417748.1_2_2:201994190-201994530:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2828369140625	2	538.725003	1075.43545	-1.0037	-0.00054073	4.3273	0.0023312	3.3236	0.0017905	538.7271295265563	41.776	0.4875	41.546	41.274	41.761	-0.23029					20	12	2	0	0	0	0.024506	1	3726	3726		16.473	0	1	277900			6237	13919	3877	3892	7860	7860					-0.09924633562786767
DEFKIPKV	8	Unmodified	_DEFKIPKV_					0	0	0			REV__ENSG00000169255|ENST00000320474|B3GALNT1	REV__ENSG00000169255|ENST00000320474|B3GALNT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2850646972656	2	488.279118	974.543683	-0.27731	-0.00013541	2.22	0.001084	1.9427	0.00094856	488.2798302304826	52.464	0.43787	52.464	52.273	52.711	0					17	10	2	0	0	0	0.027866	1	5644	5644		47.657	5.2612	1	269850	+		6238	26345	3878	3893	7861	7861					0.055392420743373805
DEFKNYQDK	9	Unmodified	_DEFKNYQDK_					0	0	0		PDE6B|p.S686F|1|0.52|ENSG00000133256|chr4:664149-664149|C/T|missense_variant	PDE6B|p.S686F|1|0.52|ENSG00000133256|chr4:664149-664149|C/T|missense_variant	PDE6B|p.S686F|1|0.52|ENSG00000133256|chr4:664149-664149|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.772385	1185.53022	-0.058907	-3.4977E-05	-2.1222	-0.0012601	-2.1812	-0.0012951	594.2736420266823	35.912	0.36791	35.714	35.542	35.91	-0.19829					19	10	3	0	0	0	0.024257	1	2776	2776		49.536	5.1589	1	197030			6239	18955	3879	3894	7862	7862					-0.05512660495583077
DEFKSTPTV	9	Unmodified	_DEFKSTPTV_					0	0	0			REV__ENSG00000095464|ENST00000371447|PDE6C	REV__ENSG00000095464|ENST00000371447|PDE6C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.80615234375	2	512.253297	1022.49204	0.56477	0.00028931	-0.84726	-0.00043401	-0.28249	-0.0001447	512.2524282815723	70.745	0.62212	70.745	70.483	71.105	0					31	14	3	0	0	0	0.024261	1	8547	8547		54.776	19.158	1	438080	+		6240	20965	3880	3895	7863	7863					-0.01830546410246825
DEFKTLQAQ	9	Unmodified	_DEFKTLQAQ_					0	0	0		ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2919921875	2	540.272021	1078.52949	0.11417	6.168E-05	3.5593	0.001923	3.6735	0.0019847	540.2720083394958	72.228	0.16125	71.966	71.884	72.045	-0.26199					5	3	2	0	0	0	0.024506	1	8477	8477		23.042	0	1	24630			6241	10447	3881	3896	7864	7864					-0.006634551446268233
DEFLHVLF	8	Unmodified	_DEFLHVLF_					0	0	0			REV__ENST00000472719.5_1_2:27008929-27016144:+|nuORF	REV__ENST00000472719.5_1_2:27008929-27016144:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2740173339844	2	510.263468	1018.51238	-0.26144	-0.0001334	-3.2532	-0.00166	-3.5147	-0.0017934	510.26157091326496	76.067	0.95753	75.808	75.477	76.435	-0.25866					78	23	4	0	0	0	0.027866	1	8979	8979		54.765	3.4292	1	2502600	+		6242	22171	3882	3897	7865	7865					0.0038666904022193194
DEFLRQTL	8	Unmodified	_DEFLRQTL_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.3140563964844	2	511.269281	1020.52401	0.49368	0.00025241	-0.86879	-0.00044418	-0.3751	-0.00019178	511.2686158171482	50.884	0.79742	50.772	50.451	51.249	-0.11163					37	20	3	0	0	0	0.027866	1	5264	5264		84.916	0	1	1040700			6243	7173	3883	3898	7866	7866					0.0145686606357458
DEFLTGRQL	9	Unmodified	_DEFLTGRQL_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.8160400390625	2	539.780013	1077.54547	-0.81342	-0.00043907	1.0033	0.00054155	0.18985	0.00010248	539.7817578760204	45.396	0.39925	45.396	45.181	45.58	0					15	11	2	0	0	0	0.0242	1	4432	4432		60.118	5.3419	1	122670	+		6244	23578	3884	3899	7867	7867					0.009802510922781948
DEFLTGRQL	9	Unmodified	_DEFLTGRQL_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.780013	1077.54547	-0.99669	-0.00053799	0.11077	5.9789E-05	-0.88592	-0.0004782	539.7813095287099	45.551	0.26818	45.4	45.178	45.446	-0.15156	-0.0013985	-0.0020334	NaN	60.118	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95964	+		6245	23578	3884	3899							0.009802510922781948
DEFLTGRQL	9	Unmodified	_DEFLTGRQL_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.780013	1077.54547	-0.87364	-0.00047157	4.8418	0.0026135	3.9682	0.0021419	540.2848844512074	45.364	0.26934	45.408	45.311	45.58	0.043877	0.006852	0.003074	NaN	60.118	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91234	+		6246	23578	3884	3899							0.009802510922781948
DEFLVLHMA	9	Unmodified	_DEFLVLHMA_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.32861328125	2	537.76806	1073.52157	-1.5054	-0.00080954	3.208	0.0017252	1.7026	0.00091563	537.7687639068903	82.012	0.64268	81.872	81.443	82.086	-0.14014					33	14	4	0	0	0	0.024487	1	9831	9831		24.203	0	1	174860	+		6247	19687	3885	3900	7868	7868					-0.01225305665752785
DEFPCQWDV	9	Unmodified	_DEFPCQWDV_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.82568359375	2	569.729132	1137.44371	-1.2556	-0.00071534	-4.1331	-0.0023547	-5.3887	-0.0030701	569.7265701411487	74.234	0.88768	74.243	73.967	74.854	0.0096512					41	20	3	0	0	0	0.024506	1	9066	9066		30.504	14.862	1	1010900	+		6248	23025	3886	3901	7869	7869					-0.1195136332180482
DEFPEARGEH	10	Unmodified	_DEFPEARGEH_					0	0	0		nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4	nc|ENSG00000164164|Q01804-5|OTUD4	nc|ENSG00000164164|Q01804-5|OTUD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.8013916015625	2	593.759809	1185.50507	-0.51847	-0.00030785	1.29	0.00076593	0.7715	0.00045808	593.7585089268973	35.752	0.42574	35.553	35.248	35.674	-0.19829					28	11	4	0	0	0	0.03519	1	2704	2704		37.812	4.9991	1	384560			6249	7229	3887	3902	7870	7870					-0.08026715298137788
DEFPVYHL	8	Unmodified	_DEFPVYHL_					0	0	0			REV__ENSG00000249861|ENST00000392051|LGALS16	REV__ENSG00000249861|ENST00000392051|LGALS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2737731933594	2	510.245275	1018.476	-1.0498	-0.00053566	2.5672	0.0013099	1.5174	0.00077425	510.2473139745252	90.601	0.2111	90.446	90.264	90.475	-0.1552					7	4	2	0	0	0	0.027866	1	11090	11090		39.021	18.54	1	46052	+		6250	29020	3888	3903	7871	7871					-0.03250207856490306
DEFRLLGQ	8	Unmodified	_DEFRLLGQ_					0	0	0			REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF	REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7823181152344	2	489.256174	976.497795	0.24576	0.00012024	-0.47326	-0.00023155	-0.2275	-0.00011131	489.25584349920194	40.006	1.3416	40.006	39.006	40.347	0					91	37	3	0	0	0	0.027866	1	3524	3524		63.306	0	1	3130000	+		6251	32234	3889	3904	7872	7872					0.008605968921074236
DEFTYPKDA	9	Unmodified	_DEFTYPKDA_					0	0	0			REV__nc|ENSG00000285130|Q16595-2|FXN	REV__nc|ENSG00000285130|Q16595-2|FXN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2797241210938	2	543.242929	1084.47131	-0.76879	-0.00041764	-2.5513	-0.001386	-3.3201	-0.0018036	543.2423578601894	62.022	0.38925	61.764	61.588	61.978	-0.25725					16	9	2	0	0	0	0.024466	1	6919	6919		31.53	16.866	1	121150	+		6252	25834	3890	3905	7873	7873					-0.06755136789888638
DEGALQRF	8	Unmodified	_DEGALQRF_					0	0	0			REV__ENSG00000014216|ENST00000279247|CAPN1	REV__ENSG00000014216|ENST00000279247|CAPN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.73883056640625	2	468.232699	934.450845	-0.54895	-0.00025704	-2.5566	-0.0011971	-3.1056	-0.0014541	468.2326714417304	26.206	0.66889	25.97	25.636	26.305	-0.23603					26	18	2	0	0	0	0.027866	1	1370	1370		38.806	3.1879	1	238840	+		6253	19965	3891	3906	7874	7874					-0.019002626590577165
DEGEMARLT	9	Unmodified	_DEGEMARLT_					0	0	0			REV__HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	REV__HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.3102111816406	2	511.234581	1020.45461	0.076894	3.9311E-05	3.8518	0.0019692	3.9287	0.0020085	511.23618387363604	75.754	0.5154	75.766	75.575	76.09	0.011642					18	13	2	0	0	0	0.024292	1	9207	9207		40.778	16.259	1	264390	+		6254	22701	3892	3907	7875	7875					-0.05479960947513973
DEGEPEPAG	9	Unmodified	_DEGEPEPAG_					0	0	0			REV__ENSG00000104825|ENST00000313582|NFKBIB	REV__ENSG00000104825|ENST00000313582|NFKBIB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7606201171875	2	450.682704	899.350856	-0.07003	-3.1561E-05	-3.576	-0.0016116	-3.646	-0.0016432	450.68102280803316	39.189	0.15036	38.964	38.909	39.059	-0.2257					5	3	2	0	0	0	0.024487	1	3291	3291		31.955	3.7006	1	159590	+		6255	21468	3893	3908	7876	7876					-0.10284544783507954
DEGLFEGLR	9	Unmodified	_DEGLFEGLR_					0	0	0			REV__nc|ENSG00000122432|Q5VX52-2|SPATA1	REV__nc|ENSG00000122432|Q5VX52-2|SPATA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.318359375	2	518.258914	1034.50327	0.33124	0.00017167	3.5281	0.0018285	3.8594	0.0020002	518.2601041616655	83.58	0.98285	83.441	83.124	84.107	-0.1386					28	22	2	0	0	0	0.024457	1	10129	10129		37.159	5.6293	1	62786	+		6256	22642	3894	3909	7877	7877					-0.012597243161053484
DEGLSLVTL	9	Unmodified	_DEGLSLVTL_					0	0	0			REV__ENST00000530365.1_1_11:121500185-121500269:+|nuORF	REV__ENST00000530365.1_1_11:121500185-121500269:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.271240234375	2	473.758215	945.501877	-0.052597	-2.4918E-05	0.2717	0.00012872	0.21911	0.0001038	473.75823344942313	47.499	1.1176	47.312	47.004	48.121	-0.18684					60	29	3	0	0	0	0.024381	1	4739	4739		21.96	0.25755	1	884770	+		6257	34535	3895	3910	7878	7878					0.026946415951556446
DEGQPPETK	9	Unmodified	_DEGQPPETK_					0	0	0			REV__ENSG00000174705|ENST00000311601|SH3PXD2B	REV__ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3136291503906	2	500.732729	999.450904	-0.48172	-0.00024121	-1.0156	-0.00050855	-1.4973	-0.00074976	500.73172959983583	76.384	0.23569	76.155	76.003	76.239	-0.22843					6	5	2	0	0	0	0.024477	1	9369	9369		14.865	0	1	34047	+		6258	26886	3896	3911	7879	7879					-0.04884307449708558
DEGSESVC	8	Unmodified	_DEGSESVC_					0	0	0			REV__TAF1L|p.A173V|1|0.31|ENSG00000122728|chr9:32635062-32635062|G/A|missense_variant;REV__ENSG00000122728|ENST00000242310|TAF1L	REV__ENSG00000122728|ENST00000242310|TAF1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.15155029296875	2	413.150183	824.285813	-0.42899	-0.00017724	2.3052	0.00095238	1.8762	0.00077514	413.15112341211443	81.301	0.89137	81.325	81.046	81.938	0.023911					39	21	3	0	0	0	1.0572	1	10052	10052		28.254	0	1	557930	+		6259	22661;37673	3897	3912	7880	7880					-0.13335862581004676
DEGVSGKPTV	10	Unmodified	_DEGVSGKPTV_					0	0	0		ENST00000420434.7_1_2:231175469-231175526:+|nuORF	ENST00000420434.7_1_2:231175469-231175526:+|nuORF	ENST00000420434.7_1_2:231175469-231175526:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7514343261719	2	494.750921	987.48729	-0.491	-0.00024292	0.061416	3.0386E-05	-0.42959	-0.00021254	494.7509513077415	45.548	0.77563	45.396	45.112	45.888	-0.15156					81	22	5	0	0	0	0.50517	1	4461	4461		87.696	1.8346	1	30792000			6260	13973	3898	3913	7881	7881					-0.0069543055299163825
DEHCIQAF	8	Unmodified	_DEHCIQAF_					0	0	0		ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7613830566406	2	481.70546	961.396366	0.47005	0.00022643	-3.408	-0.0016416	-2.9379	-0.0014152	481.70408852693765	41.706	0.14391	41.706	41.579	41.722	0					5	3	2	0	0	0	0.027866	1	3758	3758		14.664	3.1531	1	67318			6261	13878	3899	3914	7882	7882					-0.08587597802124947
DEHHRIPI	8	Unmodified	_DEHHRIPI_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7666320800781	2	508.76724	1015.51993	-0.11272	-5.7349E-05	-1.4076	-0.00071615	-1.5203	-0.0007735	508.76647498317294	65.963	0.85902	65.69	65.362	66.221	-0.27283					52	22	3	0	0	0	0.37125	1	7819	7819		101.21	3.7389	1	4474100	+		6262	24305	3900	3915	7883	7883					0.012788213605062992
DEHHRIPIN	9	Unmodified	_DEHHRIPIN_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8077392578125	2	565.788704	1129.56285	0.25121	0.00014213	3.752	0.0021229	4.0033	0.002265	566.2932993123048	58.747	0.24402	58.566	58.466	58.71	-0.18134					7	5	2	0	0	0	0.024511	1	6464	6464		32.812	17.948	1	80775	+		6263	24305	3901	3916	7884	7884					0.003255914179590036
DEHHYCKFQLE	11	Unmodified	_DEHHYCKFQLE_					0	0	0			REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF	REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.238037109375	3	483.546959	1447.61905	-0.57824	-0.00027961	0.30421	0.0001471	-0.27403	-0.00013251	483.5470182071707	40.185	0.46381	39.955	39.771	40.235	-0.23021					32	11	4	0	0	0	0.024856	1	3461	3461		5.6988	0	1	615420	+		6264	21713	3902	3917	7885	7885					-0.08685568527539544
DEHIRINS	8	Unmodified	_DEHIRINS_					0	0	0			REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7980651855469	2	492.24888	982.483208	-0.015735	-7.7454E-06	-2.6913	-0.0013248	-2.707	-0.0013325	492.2476215165053	52.373	0.98374	52.189	51.815	52.799	-0.18404					32	24	2	0	0	0	0.027866	1	5472	5472		42.396	5.237	1	119660	+		6265	23914	3903	3918	7886	7886					-0.008734752560485504
DEHLEHLNL	9	Unmodified	_DEHLEHLNL_					0	0	0			REV__nc|ENSG00000168067|Q12851-2|MAP4K2	REV__nc|ENSG00000168067|Q12851-2|MAP4K2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8138427734375	2	560.275095	1118.53564	-0.060995	-3.4174E-05	-3.2597	-0.0018263	-3.3207	-0.0018605	560.2731741913443	76.576	0.61122	76.576	76.228	76.84	0					29	14	3	0	0	0	0.024374	1	9432	9432		40.778	0	1	383320	+		6266	26227	3904	3919	7887	7887					-0.018889369131102285
DEHRAVVQ	8	Unmodified	_DEHRAVVQ_					0	0	0			REV__nc|ENSG00000164597|Q9UP83-3|COG5	REV__nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2347412109375	2	477.243598	952.472643	-0.68828	-0.00032848	-3.9819	-0.0019003	-4.6702	-0.0022288	477.241739873338	39.785	0.3665	39.673	39.5	39.867	-0.11223					11	9	2	0	0	0	0.027866	1	3454	3454		18.324	0	1	47965	+		6267	25774	3905	3920	7888	7888					-0.005494579104833974
DEHVLVESQ	9	Unmodified	_DEHVLVESQ_					0	0	0			REV__ENST00000361937.7_1_15:41388064-41388549:-|nuORF	REV__ENST00000361937.7_1_15:41388064-41388549:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.738525390625	2	528.253828	1054.4931	-0.15677	-8.2815E-05	-1.2406	-0.00065533	-1.3973	-0.00073815	528.2529034550549	53.486	0.68544	53.289	52.934	53.619	-0.19739					39	18	3	0	0	0	0.024447	1	5568	5568		25.574	0	1	1187100	+		6268	30957	3906	3921	7889	7889					-0.03196332041329697
DEIAKTQEL	9	Unmodified	_DEIAKTQEL_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.7772827148438	2	523.771854	1045.52915	0.084238	4.4121E-05	3.5837	0.001877	3.668	0.0019212	523.7736750521843	86.02	1.3162	86.02	85.5	86.816	0					52	30	2	0	0	0	0.40693	1	10827	10827		65.465	1.2581	1	3637600	+		6269	22521	3907	3922	7890	7890					0.008211251355078275
DEIALCVRA	9	Unmodified	_DEIALCVRA_					0	0	0			REV__ENST00000508837.1_1_5:169015420-169015759:+|nuORF	REV__ENST00000508837.1_1_5:169015420-169015759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.31536865234375	2	495.257859	988.501166	-0.13822	-6.8454E-05	2.5349	0.0012554	2.3967	0.001187	495.2567062732538	81.086	0.43871	81.086	80.861	81.299	0					12	10	2	0	0	0	0.024405	1	10068	10068		44.117	11.304	1	29451	+		6270	34073	3908	3923	7891	7891					0.006455236744386639
DEIARIDL	8	Unmodified	_DEIARIDL_					0	0	0		sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.797119140625	2	472.756007	943.497461	0.15656	7.4014E-05	4.1016	0.001939	4.2581	0.0020131	472.75774806871027	85.893	0.51381	85.756	85.535	86.049	-0.13738					18	11	2	0	0	0	0.027866	1	10378	10378		30.504	4.9296	1	75425			6271	37950	3909	3924	7892	7892					0.023451771722420744
DEIDGKPVL	9	Unmodified	_DEIDGKPVL_					0	0	0		ENSG00000221947|ENST00000408926|XKR9	ENSG00000221947|ENST00000408926|XKR9	ENSG00000221947|ENST00000408926|XKR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2618713378906	2	493.263665	984.512776	-0.19328	-9.5338E-05	0.34631	0.00017082	0.15303	7.5483E-05	493.2637914449025	71.458	1.1665	71.182	70.743	71.91	-0.2751					54	27	3	0	0	0	0.35646	1	8339	8339		68.787	2.9837	1	1762400			6272	10625	3910	3925	7893	7893					0.01990043969431099
DEIDGKPVL	9	Unmodified	_DEIDGKPVL_					0	0	0		ENSG00000221947|ENST00000408926|XKR9	ENSG00000221947|ENST00000408926|XKR9	ENSG00000221947|ENST00000408926|XKR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2611083984375	2	493.263665	984.512776	0.1335	6.5851E-05	0.12085	5.9612E-05	0.25435	0.00012546	493.2636514537046	71.396	1.3579	71.134	70.646	72.004	-0.26199					73	32	5	0	0	0	0.32811	1	8336	8336		71.877	9.7701	1	2195600			6273	10625	3910	3925	7894	7894					0.01990043969431099
DEIFTLLDL	9	Unmodified	_DEIFTLLDL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7874755859375	2	539.786973	1077.55939	-0.66608	-0.00035954	1.3667	0.00073775	0.70066	0.00037821	539.7875725364584	68.501	1.0294	68.501	68.102	69.131	0					71	26	3	0	0	0	0.20967	3	8214	8203;8214;8224		87.754	18.967	1	4372000			6274	2926	3911	3926	7895;7896;7897	7896					0.0237148380074359
DEIFTLLDL	9	Unmodified	_DEIFTLLDL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7871704101562	2	539.786973	1077.55939	-0.34692	-0.00018726	1.1556	0.00062376	0.80865	0.0004365	539.7874568088253	68.846	1.1104	68.553	68.092	69.202	-0.29267					80	28	4	0	0	0	0.33245	1	8245	8245		71.296	7.9894	1	4397400			6275	2926	3911	3926	7898	7898					0.0237148380074359
DEIIHKEI	8	Unmodified	_DEIIHKEI_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.3036804199219	2	498.771657	995.528761	-0.11059	-5.5157E-05	-0.60846	-0.00030348	-0.71905	-0.00035864	498.7712890035848	102.25	1.7741	102.26	101.9	103.68	0.0073471					65	42	3	0	0	0	0.027866	1	13229	13229		30.504	0	1	256460	+		6276	22316	3912	3927	7899	7899					0.030817502063428037
DEIIQSLDD	9	Unmodified	_DEIIQSLDD_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.29736328125	2	524.245669	1046.47678	-0.87086	-0.00045654	-0.83235	-0.00043636	-1.7032	-0.0008929	524.2455113887936	52.46	0.41179	52.191	51.981	52.393	-0.26903					19	10	3	0	0	0	0.024374	1	5407	5407		25.574	4.6271	1	274490			6277	18641	3913	3928	7900	7900					-0.044594579981094284
DEIIVLILN	9	Unmodified	_DEIIVLILN_					0	0	0			REV__ENSG00000184345|ENST00000333127|IQCF2	REV__ENSG00000184345|ENST00000333127|IQCF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.2368774414062	2	521.313158	1040.61176	0.52752	0.000275	-0.86045	-0.00044857	-0.33294	-0.00017356	521.3126222592186	63.59	0.91599	63.332	63	63.916	-0.25824					47	23	3	0	0	0	0.024436	1	7237	7237		23.042	0	1	1497700	+		6278	27659	3914	3929	7901	7901					0.09308066934340786
DEIKLNHQ	8	Unmodified	_DEIKLNHQ_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B;REV__MYO9B-ABHD8|1|fusion	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.8034362792969	2	498.759081	995.503609	-0.29605	-0.00014766	4.4039	0.0021965	4.1078	0.0020488	498.7611044104058	52.64	0.5872	52.381	52.135	52.723	-0.25838					43	14	4	0	0	0	0.027866	1	5511	5511		24.203	2.5004	1	1001300	+		6279	21001;36414	3915	3930	7902	7902					0.005676954037539872
DEILPAIII	9	Unmodified	_DEILPAIII_					0	0	0			REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.8020935058594	2	498.802426	995.590298	0.55953	0.0002791	-0.66405	-0.00033123	-0.10451	-5.2131E-05	498.8019520551757	99.7	0.46871	99.7	99.402	99.871	0					27	10	4	0	0	0	0.59099	1	12749	12749		53.351	5.4358	1	367490	+		6280	35055	3916	3931	7903	7903					0.0923268190562112
DEILPAIII	9	Unmodified	_DEILPAIII_					0	0	0			REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	498.802426	995.590298	0.55953	0.0002791	-0.66405	-0.00033123	-0.10451	-5.2131E-05	498.8019520551757	99.7	0.46871	99.7	99.402	99.871	0	0.068124	-0.00035734	NaN	53.351	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367490	+		6281	35055	3916	3931							0.0923268190562112
DEILPAIII	9	Unmodified	_DEILPAIII_					0	0	0			REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.802426	995.590298	0.8152	0.00040662	-0.79001	-0.00039406	0.025189	1.2564E-05	498.80190764092856	99.673	0.48386	99.548	99.272	99.756	-0.12458	-0.083292	-0.000483	NaN	53.351	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129940	+		6282	35055	3916	3931							0.0923268190562112
DEILPAIII	9	Unmodified	_DEILPAIII_					0	0	0			REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.802426	995.590298	-0.25001	-0.0001247	0.19595	9.774E-05	-0.054059	-2.6965E-05	498.8023222016324	99.774	0.47481	99.603	99.316	99.791	-0.17088	-0.028081	0.0005006	NaN	53.351	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163860	+		6283	35055	3916	3931							0.0923268190562112
DEINKRTA	8	Unmodified	_DEINKRTA_					0	0	0		CON__Q8VED5;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;CON__P35908;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	CON__Q8VED5;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186442|ENST00000417996|KRT3;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	ENSG00000185479|ENST00000252252|KRT6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.763916015625	2	473.751256	945.487959	0.67307	0.00031887	1.6866	0.00079903	2.3597	0.0011179	473.7519730656766	101.87	0.39673	101.74	101.54	101.94	-0.13157					23	9	3	0	0	0	0.027866	1	12647	12647		26.693	10.22	1	141510		+	6284	568;509;503;518	3917	3932	7904	7904					0.013034088867129867
DEIPIRLIE	9	Unmodified	_DEIPIRLIE_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.7582397460938	2	549.313689	1096.61282	-0.32768	-0.00018	-1.1626	-0.00063862	-1.4903	-0.00081862	549.3132827809186	68.414	0.81671	68.121	67.588	68.405	-0.29267					24	20	2	0	0	0	0.024021	1	8190	8190		58.782	27.252	1	270930	+		6285	23479	3918	3933	7905	7905					0.0683828130324855
DEIPPQPDL	9	Unmodified	_DEIPPQPDL_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2637023925781	2	512.253297	1022.49204	0.20025	0.00010258	0.14916	7.6405E-05	0.3494	0.00017898	512.2533057474677	80.762	0.56871	80.556	80.385	80.953	-0.20633					18	13	2	0	0	0	0.024477	1	9742	9742		35.618	10.044	1	154690	+		6286	19860	3919	3934	7906	7906					-0.018305464102354563
DEIQEMACF	9	Unmodified	_DEIQEMACF_					0	0	0			REV__nc|ENSG00000113407|P26639-2|TARS1	REV__nc|ENSG00000113407|P26639-2|TARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8291625976562	2	543.217543	1084.42053	-0.67293	-0.00036555	0.58921	0.00032007	-0.083721	-4.5479E-05	543.2177113416449	54.845	0.55767	54.845	54.591	55.149	0					28	15	3	0	0	0	0.024374	1	6016	6016		40.778	7.2626	1	324840	+		6287	22067	3920	3935	7907	7907					-0.11830125430765293
DEIRGAAAF	9	Unmodified	_DEIRGAAAF_					0	0	0		ENST00000582168.5_1_17:72769713-72772433:-|nuORF;ENST00000582993.5_1_17:72769713-72772472:-|nuORF	ENST00000582168.5_1_17:72769713-72772433:-|nuORF	ENST00000582168.5_1_17:72769713-72772433:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.24224853515625	2	475.240524	948.466495	4.1236	0.0019597	-0.25772	-0.00012248	3.8659	0.0018372	475.24029553437725	17.696	1.0904	17.446	17.276	18.366	-0.25049					36	21	3	0	0	0	0.80658	1	211	211		38.806	0	1	279350			6288	17173	3921	3936	7908	7908					-0.009799761420026698
DEIVIYGRL	9	Unmodified	_DEIVIYGRL_					0	0	0			REV__nc|ENSG00000184831|Q9BUR5-2|APOO	REV__nc|ENSG00000184831|Q9BUR5-2|APOO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.8265991210938	2	539.300581	1076.58661	-1.0498	-0.00056613	0.34844	0.00018791	-0.70132	-0.00037822	539.3005726286403	55.297	0.4791	55.091	54.904	55.383	-0.20613					27	13	3	0	0	0	0.024209	1	5898	5898		31.53	0	1	400980	+		6289	27703	3922	3937	7909	7909					0.05138012131760661
DEIVLKNLH	9	Unmodified	_DEIVLKNLH_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-2|MTO1;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1;ENST00000462039.5_1_6:74176287-74189878:+|nuORF;nc|ENSG00000135297|Q9Y2Z2-3|MTO1;ENST00000370308.8_1_6:74171496-74189568:+|nuORF	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	540.806031	1079.59751	-1.1773	-0.00063669	1.1304	0.00061132	-0.046922	-2.5376E-05	540.806492624299	59.697	1.7213	59.783	59.351	61.073	0.085686					118	45	5	0	0	0	0.35646	1	6742	6742		68.787	1.2932	1	5853600			6290	4873	3923	3938	7910	7910					0.060894145060501614
DEIVNQIW	8	Unmodified	_DEIVNQIW_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2837219238281	2	508.756007	1015.49746	-0.29321	-0.00014917	-1.2047	-0.00061291	-1.4979	-0.00076208	508.75605557315373	70.147	0.33667	69.88	69.662	69.999	-0.26724					14	7	3	0	0	0	0.027866	1	8139	8139		45.952	15.448	1	78127			6291	9292	3924	3939	7911	7911					-0.00966822827751912
DEIYEIMQ	8	Unmodified	_DEIYEIMQ_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8217163085938	2	520.733883	1039.45321	-0.80017	-0.00041667	1.2289	0.00063992	0.42871	0.00022324	520.7344508643621	82.09	0.81721	82.09	81.589	82.406	0					25	19	2	0	0	0	0.027866	1	10172	10172		44.117	12.162	1	51068			6292	3322	3925	3940	7912	7912					-0.06493595036272382
DEIYFYQV	8	Unmodified	_DEIYFYQV_					0	0	0			REV__ENST00000512095.5_1_4:39217537-39276579:+|nuORF	REV__ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2442626953125	2	538.75039	1075.48623	-0.25548	-0.00013764	1.6007	0.00086237	1.3452	0.00072473	538.7507531665633	55.816	0.70605	55.816	55.645	56.351	0					41	19	4	0	0	0	0.027866	1	6164	6164		65.803	0	1	1352300	+		6293	25149	3926	3941	7913	7913					-0.04849644921910112
DEIYYVIV	8	Unmodified	_DEIYYVIV_					0	0	0			REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3155517578125	2	507.263133	1012.51171	-0.10177	-5.1624E-05	-0.86244	-0.00043748	-0.96421	-0.00048911	507.26339939822594	68.845	0.25314	68.86	68.76	69.014	0.015129					9	6	2	0	0	0	0.027866	1	8195	8195		21.702	0	1	47924	+		6294	19269	3927	3942	7914	7914					0.005958296005132979
DEKDCIVVP	9	Carbamidomethyl (C)	_DEKDC(Carbamidomethyl (C))IVVP_	DEKDC(1)IVVP		DEKDC(64)IVVP		0	1	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.79541015625	2	537.760432	1073.50631	-0.16529	-8.8886E-05	-3.369	-0.0018117	-3.5343	-0.0019006	537.7606450357432	88.652	0.47401	88.668	88.406	88.88	0.015907					16	10	2	0	0	0	0.023239	1	11101	11101		64.207	31.395	1	61618	+		6295	28417	3928	3943	7915	7915	370				-0.027502172536060243
DEKGEEDEG	9	Unmodified	_DEKGEEDEG_					0	0	0			REV__ENST00000594893.5_1_19:15511079-15529746:-|nuORF	REV__ENST00000594893.5_1_19:15511079-15529746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.758544921875	2	504.193633	1006.37271	-0.13541	-6.8272E-05	-0.45273	-0.00022826	-0.58813	-0.00029653	504.1933587279831	59.579	0.40531	59.665	59.501	59.906	0.085682					17	10	2	0	0	0	0.024523	1	6756	6756		29.15	0	1	136900	+		6296	19921	3929	3944	7916	7916					-0.1302178482560521
DEKKLKAHKHS	11	Unmodified	_DEKKLKAHKHS_					0	0	0		nc|ENSG00000170262|Q8TCY5-2|MRAP;ENSG00000170262|ENST00000303645|MRAP;nc|ENSG00000170262|Q8TCY5-1|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7879638671875	3	440.917604	1319.73098	-0.48293	-0.00021293	0.61418	0.0002708	0.13125	5.7871E-05	440.91774077874015	41.405	0.76096	41.269	40.83	41.591	-0.13553					31	19	2	0	0	0	0.024816	1	3593	3593		21.78	0	1	174670			6297	8018	3930	3945	7917	7917					0.08390653611741072
DEKKLYSVT	9	Unmodified	_DEKKLYSVT_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2745971679688	2	541.790047	1081.56554	-1.6782	-0.00090926	-1.2758	-0.00069121	-2.954	-0.0016005	541.7899009848469	55.711	0.51059	55.496	55.234	55.745	-0.21551					14	13	2	0	0	0	0.024541	1	5940	5940		10.866	0	1	146280	+		6298	25831	3931	3946	7918	7918					0.02802002032240125
DEKLELGDTV	10	Unmodified	_DEKLELGDTV_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.3212890625	2	559.782418	1117.55028	0.031804	1.7803E-05	-0.3264	-0.00018272	-0.2946	-0.00016491	560.2848897558403	67.558	0.85959	67.558	67.01	67.87	0					31	21	2	0	0	0	0.03519	1	8046	8046		39.253	8.7492	1	271040			6299	7343	3932	3947	7919	7919					-0.0037890955561579176
DEKLETKDI	9	Unmodified	_DEKLETKDI_					0	0	0		nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-3|NEMF	nc|ENSG00000165525|O60524-3|NEMF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3246459960938	2	545.784961	1089.55537	-0.41885	-0.0002286	-1.4635	-0.00079874	-1.8823	-0.0010273	545.7839075669954	68.449	0.53	68.468	68.118	68.648	0.018921					31	13	3	0	0	0	0.02438	1	8119	8119		54.722	11.858	1	1552100			6300	7426	3933	3948	7920	7920					0.014173943069863526
DEKLETKDI	9	Unmodified	_DEKLETKDI_					0	0	0		nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-3|NEMF	nc|ENSG00000165525|O60524-3|NEMF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.784961	1089.55537	-0.70278	-0.00038357	-2.4439	-0.0013338	-3.1467	-0.0017174	545.7833088529777	68.684	0.81381	68.423	67.733	68.547	-0.26166	0.0077327	-0.00038174	NaN	63.534	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431840			6301	7426	3933	3948							0.014173943069863526
DEKLETKDI	9	Unmodified	_DEKLETKDI_					0	0	0		nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-3|NEMF	nc|ENSG00000165525|O60524-3|NEMF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.784961	1089.55537	0.20712	0.00011304	-3.3239	-0.0018141	-3.1167	-0.0017011	545.7827752074955	68.592	1.1692	68.349	67.378	68.548	-0.24277	-0.065429	-0.0013423	NaN	63.534	50	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347050			6302	7426	3933	3948							0.014173943069863526
DEKLETKDI	9	Unmodified	_DEKLETKDI_					0	0	0		nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-3|NEMF	nc|ENSG00000165525|O60524-3|NEMF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.784961	1089.55537	-0.090808	-4.9562E-05	-3.4857	-0.0019024	-3.5765	-0.001952	545.7829095852604	68.579	1.1293	68.349	67.43	68.559	-0.23048	-0.065891	-0.001519	NaN	63.534	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335410			6303	7426	3933	3948							0.014173943069863526
DEKLFLVL	8	Unmodified	_DEKLFLVL_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1;ENST00000479985.1_1_22:50169237-50169760:-|nuORF	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.21954345703125	2	488.789318	975.564084	-0.04229	-2.0671E-05	-2.9158	-0.0014252	-2.9581	-0.0014459	488.78776174068696	29.258	0.63434	29.109	28.743	29.377	-0.14952					27	14	3	0	0	0	0.027866	1	1759	1759		28.254	1.4582	1	390970			6304	2201	3934	3949	7921	7921					0.07532412734121863
DEKLFLVL	8	Unmodified	_DEKLFLVL_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1;ENST00000479985.1_1_22:50169237-50169760:-|nuORF	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.789318	975.564084	-1.333	-0.00065158	-1.7486	-0.00085469	-3.0816	-0.0015063	488.7882855263463	29.291	0.43481	29.046	28.838	29.273	-0.24524	-0.031435	0.00060244	NaN	28.254	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194510			6305	2201	3934	3949							0.07532412734121863
DEKLMHTLN	9	Unmodified	_DEKLMHTLN_					0	0	0			REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2891845703125	2	550.773874	1099.53319	-0.73554	-0.00040511	0.5852	0.00032231	-0.15034	-8.2803E-05	550.7740654444698	48.272	0.51368	48.272	48.037	48.551	0					21	14	2	0	0	0	0.024397	1	4889	4889		24.519	0	1	215390	+		6306	21877	3935	3950	7922	7922					-0.012591086423981324
DEKPHQATI	9	Unmodified	_DEKPHQATI_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3049926757812	2	519.764363	1037.51417	-0.81504	-0.00042363	1.6023	0.00083284	0.7873	0.00040921	519.7645675670975	93.901	0.5799	93.907	93.391	93.971	0.0059891					27	13	3	0	0	0	0.024209	1	11824	11824		56.721	0	1	236690			6307	6055	3936	3951	7923	7923					-0.0030832194181584782
DEKPTTNSM	9	Unmodified	_DEKPTTNSM_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1;ENST00000462772.1_1_2:67629954-67632183:+|nuORF	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7282409667969	2	511.726589	1021.43863	-0.60006	-0.00030707	-3.655	-0.0018703	-4.255	-0.0021774	511.7241255776151	54.85	0.56099	54.948	54.696	55.257	0.098015					23	15	2	0	0	0	0.024025	1	5965	5965		29.17	0	1	259670			6308	5706	3937	3952	7924	7924					-0.07123667184396254
DEKRDLLD	8	Unmodified	_DEKRDLLD_					0	0	0			REV__ENSG00000134684|ENST00000373477|YARS1	REV__ENSG00000134684|ENST00000373477|YARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.290771484375	2	502.256371	1002.49819	1.6835	0.00084554	1.073	0.00053892	2.7565	0.0013845	502.2568253280914	24.125	0.91958	23.944	23.671	24.59	-0.18089					41	20	3	0	0	0	0.027866	1	979	979		45.952	0	1	617080	+		6309	23470	3938	3953	7925	7925					-0.0029602817870681974
DEKVVQAVI	9	Unmodified	_DEKVVQAVI_					0	0	0		ENST00000593281.1_1_19:11541422-11545627:-|nuORF;nc|ENSG00000198003|A5D8V7-2|ODAD3;ENSG00000198003|ENST00000356392|ODAD3	ENST00000593281.1_1_19:11541422-11545627:-|nuORF	ENST00000593281.1_1_19:11541422-11545627:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3136291503906	2	500.787307	999.560061	-0.48302	-0.00024189	1.6755	0.00083906	1.1925	0.00059717	500.7882177022024	76.278	0.58725	76.049	75.815	76.402	-0.22843					26	14	3	0	0	0	0.024427	1	9369	9369		26.693	6.6961	1	1678600			6310	10083	3939	3954	7926	7926					0.060263232404167866
DELAMLHPL	9	Unmodified	_DELAMLHPL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2791137695312	2	519.76806	1037.52157	0.2001	0.000104	-4.1063	-0.0021343	-3.9062	-0.0020303	519.7658661775984	61.642	0.68581	61.415	61.153	61.839	-0.22663					42	17	3	0	0	0	0.024386	1	7176	7176		42.474	11.971	1	524820	+		6311	25256	3940	3955	7927	7927					0.004306943342726299
DELAMLHPL	9	Unmodified	_DELAMLHPL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.76806	1037.52157	-0.05591	-2.906E-05	-4.2455	-0.0022067	-4.3014	-0.0022357	519.7660857157969	61.336	0.61224	61.407	61.131	61.743	0.071125	-0.0029748	-0.00095936	NaN	42.474	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	670440	+		6312	25256	3940	3955							0.004306943342726299
DELCHINL	8	Unmodified	_DELCHINL_					0	0	0			REV__ENST00000409072.3_2_7:38725136-38725259:-|nuORF	REV__ENST00000409072.3_2_7:38725136-38725259:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.297607421875	2	478.728935	955.443317	0.30306	0.00014509	-2.8244	-0.0013521	-2.5214	-0.0012071	478.7270768436977	49.898	0.76172	49.747	49.368	50.13	-0.1512					43	20	3	0	0	0	0.027866	1	5116	5116		68.485	9.7027	1	415550	+		6313	31947	3941	3956	7928	7928					-0.036187382509979216
DELCHINL	8	Unmodified	_DELCHINL_					0	0	0			REV__ENST00000409072.3_2_7:38725136-38725259:-|nuORF	REV__ENST00000409072.3_2_7:38725136-38725259:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.728935	955.443317	0.68734	0.00032905	-3.9176	-0.0018755	-3.2303	-0.0015464	478.72681761307894	49.641	0.75382	49.641	49.362	50.116	0	-0.036425	-0.00084335	NaN	68.485	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346480	+		6314	31947	3941	3956							-0.036187382509979216
DELCHINL	8	Unmodified	_DELCHINL_					0	0	0			REV__ENST00000409072.3_2_7:38725136-38725259:-|nuORF	REV__ENST00000409072.3_2_7:38725136-38725259:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.728935	955.443317	-0.87146	-0.00041719	-2.2616	-0.0010827	-3.133	-0.0014999	478.72754106723306	49.57	0.76315	49.644	49.316	50.079	0.074192	-0.033204	0.00074223	NaN	68.485	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424300	+		6315	31947	3941	3956							-0.036187382509979216
DELCLDKL	8	Carbamidomethyl (C)	_DELC(Carbamidomethyl (C))LDKL_	DELC(1)LDKL		DELC(91)LDKL		0	1	0			REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.2478942871094	2	503.2497	1004.48485	-0.66885	-0.0003366	-2.9601	-0.0014897	-3.6289	-0.0018263	503.2480939127837	60.758	1.6064	60.834	60.389	61.995	0.075275					126	42	4	0	0	0	0.44658	1	6972	6972		90.777	8.4716	1	5395600	+		6316	24720	3942	3957	7929	7929	324				-0.017216022823163257
DELEQELLEHG	11	Unmodified	_DELEQELLEHG_					0	0	0		nc|nan|Q9UK00-2|C3orf18;ENSG00000088543|ENST00000357203|C3orf18	nc|nan|Q9UK00-2|C3orf18	nc|nan|Q9UK00-2|C3orf18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.8751220703125	3	437.873618	1310.59903	0.12166	5.327E-05	3.3052	0.0014473	3.4268	0.0015005	437.87493074737574	42.548	0.95187	42.413	42.079	43.031	-0.13467					64	26	4	0	0	0	1.0123	1	3911	3911		34.087	2.0524	1	2925200			6317	1871	3943	3958	7930	7930					-0.04385040986517197
DELEVLEEL	9	Unmodified	_DELEVLEEL_					0	0	0		ENSG00000126246|ENST00000246532|IGFLR1;nc|ENSG00000126246|Q9H665-2|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3167114257812	2	544.771519	1087.52849	-0.94412	-0.00051433	-2.0824	-0.0011344	-3.0265	-0.0016487	545.2717861568633	91.046	0.37006	91.033	90.827	91.197	-0.012383					11	8	2	0	0	0	0.024405	1	11461	11461		35.618	11.416	1	117900			6318	4188	3944	3959	7931	7931					-0.011777143041626914
DELFIQALN	9	Unmodified	_DELFIQALN_					0	0	0			REV__ENST00000579096.1_1_17:73110716-73125130:+|nuORF	REV__ENST00000579096.1_1_17:73110716-73125130:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.776611328125	2	531.776939	1061.53933	1.0932	0.00058137	-1.7784	-0.00094572	-0.68517	-0.00036436	531.776185877007	82.947	1.0697	82.84	82.382	83.452	-0.10748					69	24	5	0	0	0	0.10174	1	10347	10347		110.12	7.3465	1	3816400	+		6319	22817	3945	3960	7932	7932					0.011017328607522359
DELFLRAVL	9	Unmodified	_DELFLRAVL_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2975463867188	2	538.310949	1074.60735	-0.43797	-0.00023576	-1.9231	-0.0010352	-2.3611	-0.001271	538.3091185786282	59.283	1.0974	59.369	58.921	60.018	0.085682					71	29	4	0	0	0	0.023007	1	6705	6705		99.375	51.718	1	3259500			6320	6257	3946	3961	7933	7933					0.0730260251141317
DELFSAFS	8	Unmodified	_DELFSAFS_					0	0	0			REV__nc|ENSG00000147394|O15231-8|ZNF185	REV__nc|ENSG00000147394|O15231-8|ZNF185	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2235107421875	2	458.208358	914.402163	0.25661	0.00011758	4.382	0.0020079	4.6386	0.0021255	458.2103060744764	101.75	0.78539	101.58	101.1	101.89	-0.17178					22	17	2	0	0	0	0.027866	1	12626	12626		25.45	1.2474	1	112820	+		6321	24549	3947	3962	7934	7934					-0.05846176018792448
DELGFRKN	8	Unmodified	_DELGFRKN_					0	0	0		ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000470518.5_1_22:40803281-40805023:+|nuORF;ENST00000478085.5_1_22:40802939-40803686:+|nuORF	ENSG00000100359|ENST00000248929|SGSM3	ENSG00000100359|ENST00000248929|SGSM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.7774963378906	2	489.753798	977.493044	-0.95806	-0.00046921	0.63426	0.00031063	-0.3238	-0.00015858	489.75405773152465	51.614	0.78314	51.338	51.079	51.862	-0.27562					50	20	4	0	0	0	0.027866	1	5290	5290		50.025	24.574	1	1595700			6322	2190	3948	3963	7935	7935					0.0033971274932582674
DELGFRKN	8	Unmodified	_DELGFRKN_					0	0	0		ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000470518.5_1_22:40803281-40805023:+|nuORF;ENST00000478085.5_1_22:40802939-40803686:+|nuORF	ENSG00000100359|ENST00000248929|SGSM3	ENSG00000100359|ENST00000248929|SGSM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	489.753798	977.493044	0.34513	0.00016903	-0.39367	-0.0001928	-0.04854	-2.3773E-05	489.75337725990084	51.315	0.67131	51.315	51.03	51.702	0	0.032737	0.00014395	NaN	40.573	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1508400			6323	2190	3948	3963							0.0033971274932582674
DELGFRKN	8	Unmodified	_DELGFRKN_					0	0	0		ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000470518.5_1_22:40803281-40805023:+|nuORF;ENST00000478085.5_1_22:40802939-40803686:+|nuORF	ENSG00000100359|ENST00000248929|SGSM3	ENSG00000100359|ENST00000248929|SGSM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.753798	977.493044	-1.2114	-0.00059328	4.0532	0.0019851	2.8418	0.0013918	489.75410337939263	51.175	0.543	51.262	51.001	51.544	0.087009	-0.020287	0.0044997	NaN	40.573	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1092700			6324	2190	3948	3963							0.0033971274932582674
DELGPAAALGP	11	Unmodified	_DELGPAAALGP_					0	0	0			REV__ENSG00000116819|ENST00000373235|TFAP2E	REV__ENSG00000116819|ENST00000373235|TFAP2E	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7614440917969	2	505.761289	1009.50803	0.38767	0.00019607	-1.8076	-0.00091424	-1.42	-0.00071817	505.76042662558916	107.37	0.44624	107.21	106.88	107.32	-0.15771					38	16	3	0	0	0	1.0345	1	13331	13331		29.15	1.2673	1	279770	+		6325	22307	3949	3964	7936	7936					0.003651598266515066
DELIAKMG	8	Unmodified	_DELIAKMG_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-2|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.7290344238281	2	438.728403	875.442254	-0.47357	-0.00020777	2.2691	0.00099551	1.7955	0.00078774	438.7292768842291	35.279	0.94167	35.279	34.746	35.687	0					64	24	3	0	0	0	0.99042	1	2709	2709		38.806	4.6336	1	2439800			6326	5215	3950	3965	7937	7937					-0.000449526198735839
DELIAKMG	8	Unmodified	_DELIAKMG_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-2|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	438.728403	875.442254	-0.74842	-0.00032835	2.6763	0.0011742	1.9279	0.00084581	438.7294233857237	35.125	1.0735	35.104	34.435	35.509	-0.021763	-0.068078	0.00037929	NaN	38.806	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2204600			6327	5215	3950	3965							-0.000449526198735839
DELIAKMG	8	Unmodified	_DELIAKMG_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-2|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	438.728403	875.442254	-0.0444	-1.948E-05	2.5176	0.0011046	2.4732	0.0010851	438.7290226535842	35.28	0.73058	35.094	34.721	35.452	-0.18675	-0.078027	0.00024008	NaN	38.806	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233350			6328	5215	3950	3965							-0.000449526198735839
DELIAQLKTEA	11	Unmodified	_DELIAQLKTEA_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.8296508789062	2	615.832443	1229.65033	-0.82448	-0.00050774	-3.6471	-0.002246	-4.4716	-0.0027537	615.8299733499852	95.885	2.1547	95.885	95.35	97.504	0					105	49	4	0	0	0	0.56299	1	12208	12208		72.243	13.461	1	1048500	+		6329	23668	3951	3966	7938	7938					0.044693277782016594
DELIAQLKTEA	11	Unmodified	_DELIAQLKTEA_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	615.832443	1229.65033	0.4596	0.00028304	-5.0836	-0.0031307	-4.624	-0.0028476	615.829102273447	95.753	1.7554	95.757	95.432	97.187	0.0038071	0.021562	-0.00087539	NaN	72.243	101	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1111300	+		6330	23668	3951	3966							0.044693277782016594
DELIAQLKTEA	11	Unmodified	_DELIAQLKTEA_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	615.832443	1229.65033	-0.069372	-4.2721E-05	-4.4951	-0.0027682	-4.5644	-0.0028109	615.8294829994064	95.894	1.625	95.896	95.524	97.149	0.0020676	0.16061	-0.00015049	NaN	72.243	96	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1153200	+		6331	23668	3951	3966							0.044693277782016594
DELIAQLKTEA	11	Unmodified	_DELIAQLKTEA_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	615.832443	1229.65033	-0.65281	-0.00040202	-3.9775	-0.0024495	-4.6303	-0.0028515	615.8297182322385	95.797	0.43538	95.66	95.375	95.81	-0.13689	-0.07524	0.00048695	NaN	72.243	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69218	+		6332	23668	3951	3966							0.044693277782016594
DELIAQLKTEA	11	Unmodified	_DELIAQLKTEA_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	615.832443	1229.65033	0.12281	7.563E-05	-4.5245	-0.0027863	-4.4017	-0.0027107	615.8293628641733	95.718	0.64689	95.596	95.378	96.025	-0.12251	-0.13977	-0.00018676	NaN	72.243	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57388	+		6333	23668	3951	3966							0.044693277782016594
DELIAQLKTEA	11	Unmodified	_DELIAQLKTEA_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	615.832443	1229.65033	-0.41388	-0.00025488	-4.4475	-0.0027389	-4.8614	-0.0029938	615.8296543141912	95.775	0.5235	95.618	95.356	95.88	-0.15646	-0.11699	-9.1954E-05	NaN	72.243	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68780	+		6334	23668	3951	3966							0.044693277782016594
DELIDFTEY	9	Unmodified	_DELIDFTEY_					0	0	0			REV__ENST00000405027.1_1_6:3978829-3979330:+|nuORF	REV__ENST00000405027.1_1_6:3978829-3979330:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.7538452148438	2	572.755869	1143.49719	-0.20445	-0.0001171	-1.8532	-0.0010614	-2.0577	-0.0011785	572.7547731031191	52.295	1.0213	52.111	51.852	52.874	-0.18405					56	25	4	0	0	0	0.43973	1	5422	5422		63.306	2.3343	1	2789000	+		6335	21706	3952	3967	7939	7939					-0.06882287338271453
DELIKPFKV	9	Unmodified	_DELIKPFKV_					0	0	0			REV__ENST00000233143.5_1_2:85133515-85133596:+|nuORF	REV__ENST00000233143.5_1_2:85133515-85133596:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.8239135742188	2	544.82115	1087.62775	-0.59151	-0.00032227	0.75384	0.00041071	0.16233	8.8442E-05	544.8212457030517	98.764	1.6467	98.596	98.113	99.759	-0.16863					109	39	4	0	0	0	0.45795	1	12282	12282		62.107	1.9892	1	820000	+		6336	29417	3953	3968	7940	7940					0.08743773171227076
DELIKPTSL	9	Unmodified	_DELIKPTSL_					0	0	0		nc|ENSG00000033800|O75925-3|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.76104736328125	2	508.28714	1014.55973	0.55647	0.00028285	-0.62285	-0.00031659	-0.066382	-3.3741E-05	508.2866895595456	84.325	0.84197	84.166	83.976	84.818	-0.15868					43	19	3	0	0	0	0.024323	1	10240	10240		20.947	0	1	832620			6337	1025	3954	3969	7941	7941					0.05302903520566815
DELKGWEL	8	Unmodified	_DELKGWEL_					0	0	0			REV__nc|ENSG00000204946|Q6ZMS7-1|ZNF783	REV__nc|ENSG00000204946|Q6ZMS7-1|ZNF783	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7850341796875	2	495.250557	988.486562	-1.0484	-0.00051922	-2.8497	-0.0014113	-3.8981	-0.0019305	495.24901403324486	29.913	0.57554	29.991	29.724	30.3	0.078344					31	13	3	0	0	0	0.027866	1	1826	1826		68.787	0	1	330840	+		6338	28644	3955	3970	7942	7942					-0.00814225202043417
DELKIDPL	8	Unmodified	_DELKIDPL_					0	0	0		ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1	ENSG00000105662|ENST00000321949|CRTC1	ENSG00000105662|ENST00000321949|CRTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.760009765625	2	471.760758	941.506963	-0.1218	-5.7463E-05	-0.62399	-0.00029438	-0.7458	-0.00035184	471.76034940524886	75.607	0.67717	75.348	75.033	75.71	-0.25866					40	16	3	0	0	0	0.80469	1	8953	8953		58.782	3.2778	1	1035000			6339	2704	3956	3971	7943	7943					0.033869454577597935
DELKLIHE	8	Unmodified	_DELKLIHE_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.8034362792969	2	498.771657	995.528761	0.63261	0.00031553	-0.78159	-0.00038983	-0.14898	-7.4305E-05	498.7713030184985	53.002	0.11903	52.743	52.644	52.763	-0.25838					4	2	2	0	0	0	0.027866	1	5511	5511		32.812	7.3622	1	82339	+		6340	24030	3957	3972	7944	7944					0.03081750206331435
DELKQAEEI	9	Unmodified	_DELKQAEEI_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7968139648438	2	537.769311	1073.52407	0.14045	7.5531E-05	3.8679	0.00208	4.0083	0.0021555	537.7712155882261	78.444	1.1599	78.251	77.849	79.009	-0.19211					69	27	4	0	0	0	0.023655	1	9623	9623		69.628	12.907	1	1763600	+		6341	20580	3958	3973	7945	7945					-0.009751787270943169
DELKQAEEI	9	Unmodified	_DELKQAEEI_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.769311	1073.52407	-0.36383	-0.00019566	3.4948	0.0018794	3.131	0.0016837	537.7706369263634	78.515	0.98816	78.261	77.826	78.814	-0.25471	0.0084114	-0.001152	NaN	69.628	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349810	+		6342	20580	3958	3973							-0.009751787270943169
DELKQAEEI	9	Unmodified	_DELKQAEEI_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.769311	1073.52407	-0.050589	-2.7205E-05	3.2524	0.0017491	3.2018	0.0017218	537.7705234159426	78.462	0.98448	78.231	77.877	78.861	-0.23141	-0.021134	-0.0014127	NaN	69.628	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389410	+		6343	20580	3958	3973							-0.009751787270943169
DELKQAEEI	9	Unmodified	_DELKQAEEI_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.769311	1073.52407	-0.68974	-0.00037092	3.9556	0.0021272	3.2659	0.0017563	537.7710620424356	78.365	0.81786	78.209	77.87	78.688	-0.15591	-0.043083	-0.0006564	NaN	69.628	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476850	+		6344	20580	3958	3973							-0.009751787270943169
DELLEQKF	8	Unmodified	_DELLEQKF_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.8089294433594	2	511.263665	1020.51278	-0.50236	-0.00025684	-3.5601	-0.0018201	-4.0624	-0.002077	511.76305065359855	21.973	1.0356	21.782	21.42	22.455	-0.19072					39	21	3	0	0	0	0.027866	1	761	761		20.482	0	1	66220			6345	1577	3959	3974	7946	7946					0.003340439694284214
DELLKLLLPLL	11	Unmodified	_DELLKLLLPLL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.2652587890625	3	427.279368	1278.81628	0.18208	7.7797E-05	3.4021	0.0014537	3.5842	0.0015315	427.2826506151805	54.011	0.38576	53.765	53.625	54.01	-0.2453					23	12	3	0	0	0	0.024809	1	5717	5717		12.433	1.3361	1	294580			6346	9358	3960	3975	7947	7947					0.1880200602486184
DELLSALTL	9	Unmodified	_DELLSALTL_					0	0	0			REV__ENSG00000213265|ENST00000356588|TSGA13	REV__ENSG00000213265|ENST00000356588|TSGA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7730407714844	2	487.773865	973.533177	-1.1705	-0.00057093	2.0094	0.00098012	0.8389	0.00040919	487.77477740607304	85.604	0.53491	85.628	85.367	85.902	0.024078					32	12	3	0	0	0	0.11848	1	10680	10680		106.42	12.409	1	3471000	+		6347	28734	3961	3976	7948	7948					0.04535214629231632
DELLSKRR	8	Unmodified	_DELLSKRR_					0	0	0			REV__ENST00000546324.1_1_11:73018936-73020108:-|nuORF	REV__ENST00000546324.1_1_11:73018936-73020108:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.8131103515625	2	508.795998	1015.57744	-0.50692	-0.00025792	-2.7303	-0.0013892	-3.2372	-0.0016471	508.794460687486	93.685	0.86764	93.681	93.2	94.068	-0.0042038					51	20	3	0	0	0	0.027866	1	11827	11827		25.45	0	1	303530	+		6348	34838	3962	3977	7949	7949					0.07027663566088904
DELLSMFLK	9	Oxidation (M)	_DELLSM(Oxidation (M))FLK_		DELLSM(1)FLK		DELLSM(88)FLK	0	0	1			REV__nc|ENSG00000090686|Q86UV5-2|USP48;REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2894287109375	2	556.288825	1110.5631	-0.42162	-0.00023454	0.674	0.00037494	0.25238	0.0001404	556.2891207493828	65.176	1.4239	65.176	64.8	66.224	0					114	38	5	0	0	0	0.20967	2	7700	7700;7749		87.754	18.967	1	14169000	+		6349	20884;36504	3963	3978	7950;7951	7950		639			0.012238303029107556
DELLSMFLK	9	Oxidation (M)	_DELLSM(Oxidation (M))FLK_		DELLSM(1)FLK		DELLSM(85)FLK	0	0	1			REV__nc|ENSG00000090686|Q86UV5-2|USP48;REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2888793945312	2	556.288825	1110.5631	0.0623	3.4657E-05	2.0554	0.0011434	2.1177	0.001178	556.2886302934431	67.309	3.4678	67.309	66.487	69.954	0					206	88	5	0	0	0	0.23085	1	8029	8029		84.916	17.422	1	3137100	+		6350	20884;36504	3963	3978	7952	7952		639			0.012238303029107556
DELLSMFLK	9	Oxidation (M)	_DELLSM(Oxidation (M))FLK_		DELLSM(1)FLK		DELLSM(88)FLK	0	0	1			REV__nc|ENSG00000090686|Q86UV5-2|USP48;REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.289306640625	2	556.288825	1110.5631	-0.87819	-0.00048853	1.2642	0.00070324	0.38598	0.00021472	556.2894433445639	65.496	1.3967	65.223	64.825	66.221	-0.27282					122	37	4	0	0	0	0.20967	1	7740	7740		87.754	21.951	1	12632000	+		6351	20884;36504	3963	3978	7953	7953		639			0.012238303029107556
DELLSMFLK	9	Oxidation (M)	_DELLSM(Oxidation (M))FLK_					0	0	1			REV__nc|ENSG00000090686|Q86UV5-2|USP48;REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	556.288825	1110.5631	-0.28254	-0.00015718	2.0208	0.0011241	1.7382	0.00096696	556.2888474042767	67.657	2.7348	67.369	66.581	69.316	-0.28834	-0.011295	0.00010523	NaN	84.916	168	69	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3080900	+		6352	20884;36504	3963	3978				639			0.012238303029107556
DELLSMFLK	9	Unmodified	_DELLSMFLK_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-2|USP48;REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.29150390625	2	548.291368	1094.56818	0.021529	1.1804E-05	-0.21305	-0.00011681	-0.19152	-0.00010501	548.291168063182	72.455	1.0509	72.465	72.094	73.145	0.0097733					55	25	3	0	0	0	0.26966	1	8738	8738		79.713	0	1	8630200	+		6353	20884;36504	3963	3979	7954	7954					0.024681341655195865
DELPIGIVE	9	Unmodified	_DELPIGIVE_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.76580810546875	2	492.76604	983.517527	-0.40058	-0.00019739	1.6874	0.0008315	1.2868	0.00063411	492.76688273875067	77.816	2.3666	77.832	77.147	79.514	0.015907					155	56	4	0	0	0	0.62163	1	9487	9487		51.335	0	1	4529700	+		6354	19859	3964	3980	7955	7955					0.02510928112201327
DELPKKLT	8	Unmodified	_DELPKKLT_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.76678466796875	2	472.276575	942.538597	1.0824	0.00051118	-1.8143	-0.00085684	-0.7319	-0.00034566	472.2755993210213	71.396	1.066	71.396	71.145	72.211	0					35	27	2	0	0	0	0.027866	1	8621	8621		33.516	0	1	1060000	+		6355	27801	3965	3981	7956	7956					0.06502938211713172
DELPKKLT	8	Unmodified	_DELPKKLT_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7668762207031	2	472.276575	942.538597	0.90016	0.00042512	-1.2781	-0.00060361	-0.37793	-0.00017849	472.2757964166713	71.7	0.97871	71.411	71.193	72.172	-0.28858					36	25	2	0	0	0	0.027866	1	8637	8637		47.916	12.715	1	1072000	+		6356	27801	3965	3981	7957	7957					0.06502938211713172
DELPLTEEK	9	Unmodified	_DELPLTEEK_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8021850585938	2	537.271687	1072.52882	-0.9527	-0.00051186	-0.86657	-0.00046558	-1.8193	-0.00097744	537.2725782859291	73.091	0.35752	73.091	72.825	73.182	0					13	8	2	0	0	0	0.024541	1	8916	8916		30.318	0	1	101010	+		6357	24288	3966	3982	7958	7958					-0.00454294584346826
DELPYRYRLCK	11	Unmodified	_DELPYRYRLCK_					0	0	0			REV__ENSG00000073614|ENST00000399788|KDM5A	REV__ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77703857421875	3	485.918616	1454.73402	-1.4386	-0.00069906	2.854	0.0013868	1.4154	0.00068776	486.2539661162845	29.834	0.4042	29.834	29.692	30.096	0					12	9	2	0	0	0	0.024809	1	1896	1896		12.433	1.4346	1	42640	+		6358	20504	3967	3983	7959	7959					0.024841606742484146
DELQDGEQH	9	Unmodified	_DELQDGEQH_					0	0	0			REV__ENST00000577038.1_1_17:53497807-53499129:-|nuORF	REV__ENST00000577038.1_1_17:53497807-53499129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2973022460938	2	535.722892	1069.43123	-0.5593	-0.00029963	1.381	0.00073986	0.82175	0.00044023	535.7232790786185	28.622	0.68591	28.703	28.37	29.056	0.080811					33	16	4	0	0	0	0.024515	1	1646	1646		28.081	0	1	315970	+		6359	35473	3968	3984	7960	7960					-0.10070683460457985
DELQDGEQH	9	Unmodified	_DELQDGEQH_					0	0	0			REV__ENST00000577038.1_1_17:53497807-53499129:-|nuORF	REV__ENST00000577038.1_1_17:53497807-53499129:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.722892	1069.43123	-0.98295	-0.00052659	2.0067	0.001075	1.0237	0.00054843	535.7240631406677	28.943	0.6872	28.946	28.589	29.276	0.0031357	0.12169	0.0003873	NaN	40.058	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405480	+		6360	35473	3968	3984							-0.10070683460457985
DELQFDIF	8	Unmodified	_DELQFDIF_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2540283203125	2	513.742565	1025.47058	-1.05	-0.00053941	-1.6793	-0.00086275	-2.7293	-0.0014022	513.7416587645024	29.385	0.64433	29.139	28.796	29.44	-0.24524					35	14	3	0	0	0	0.027866	1	1786	1786		38.806	0	1	429250	+		6361	22617	3969	3985	7961	7961					-0.0411393143897385
DELQFDIF	8	Unmodified	_DELQFDIF_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2539672851562	2	513.742565	1025.47058	-0.52213	-0.00026824	-2.2097	-0.0011352	-2.7318	-0.0014034	513.7413257307883	29.256	0.68211	29.084	28.723	29.406	-0.17258					33	15	3	0	0	0	0.027866	1	1775	1775		47.916	0	1	493970	+		6362	22617	3969	3985	7962	7962					-0.0411393143897385
DELQLRYHCC	10	Unmodified	_DELQLRYHCC_					0	0	0		ENSG00000149489|ENST00000278833|ROM1	ENSG00000149489|ENST00000278833|ROM1	ENSG00000149489|ENST00000278833|ROM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2647705078125	3	427.190119	1278.54853	0.05424	2.3171E-05	-1.7823	-0.00076138	-1.7281	-0.00073821	427.18994175015484	54.222	0.20709	54.075	53.987	54.194	-0.14723					8	5	2	0	0	0	0.03519	1	5905	5905		20.03	10.384	1	58815			6363	6096	3970	3986	7963	7963					-0.07960565116832186
DELQRTREA	9	Unmodified	_DELQRTREA_					0	0	0			REV__ENSG00000095066|ENST00000397668|HOOK2	REV__ENSG00000095066|ENST00000397668|HOOK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2962646484375	2	559.283451	1116.55235	0.15862	8.8716E-05	3.7222	0.0020818	3.8809	0.0021705	559.2855433172473	50.705	0.59247	50.594	50.267	50.859	-0.11163					24	15	2	0	0	0	0.024447	1	5136	5136		19.104	0	1	974110	+		6364	20957	3971	3987	7964	7964					-0.0012643602713069413
DELRKMTE	8	Unmodified	_DELRKMTE_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.253662109375	2	511.252774	1020.491	-1.0366	-0.00052997	2.4589	0.0012571	1.4223	0.00072714	511.756281906378	80.424	0.79454	80.446	79.938	80.733	0.021439					25	18	2	0	0	0	0.027866	1	9947	9947		16.473	0	1	186010	+		6365	22540	3972	3988	7965	7965					-0.01843084050778998
DELRLQIIN	9	Unmodified	_DELRLQIIN_					0	0	0		sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.311279296875	2	557.316763	1112.61897	-0.16955	-9.4491E-05	2.4059	0.0013408	2.2363	0.0012463	557.3179400033109	69.737	0.57895	69.515	69.39	69.969	-0.22245					26	13	3	0	0	0	0.024495	1	8078	8078		42.396	11.892	1	501000			6366	37944	3973	3989	7966	7966					0.06716799534774509
DELRRVAE	8	Unmodified	_DELRRVAE_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.78533935546875	2	494.26453	986.514508	0.060074	2.9693E-05	1.1276	0.00055734	1.1877	0.00058703	494.2654179602931	57.084	0.26107	56.859	56.7	56.961	-0.2248					10	6	2	0	0	0	0.027866	1	6184	6184		57.811	6.4758	1	103230			6367	1498	3974	3990	7967	7967					0.0207109777804817
DELSHLLTL	9	Unmodified	_DELSHLLTL_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2625732421875	2	520.784764	1039.55498	-0.5431	-0.00028284	0.98616	0.00051358	0.44306	0.00023074	520.7851949186538	73.457	0.49562	73.467	73.181	73.677	0.0096512					26	12	3	0	0	0	0.024292	1	8909	8909		58.782	7.4465	1	1137600			6368	9948	3975	3991	7968	7968					0.03678019377821329
DELSHLLTL	9	Unmodified	_DELSHLLTL_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.784764	1039.55498	-0.8053	-0.00041939	1.2401	0.00064582	0.43478	0.00022643	520.7853591917515	73.47	0.47052	73.47	73.146	73.617	0	-0.0043081	0.00012488	NaN	58.782	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1034700			6369	9948	3975	3991							0.03678019377821329
DELSLDDGL	9	Unmodified	_DELSLDDGL_					0	0	0			REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__ENSG00000100346|ENST00000402142|CACNA1I	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2516174316406	2	488.727112	975.439671	-1.0642	-0.00052009	1.74	0.00085039	0.67585	0.00033031	488.7280427653592	80.292	0.7135	80.14	79.8	80.514	-0.15169					30	16	3	0	0	0	0.024477	1	9907	9907		27.882	0	1	225130	+		6370	21095;36517	3976	3992	7969	7969					-0.049031295438453526
DELSPSLDL	9	Unmodified	_DELSPSLDL_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28656005859375	2	494.745305	987.476056	0.27574	0.00013642	-0.68451	-0.00033866	-0.40877	-0.00020224	494.7421325507228	67.314	0.63115	67.314	67.088	67.719	0					27	15	3	0	0	0	0.024205	1	8014	8014		35.618	0	1	84029	+		6371	23610	3977	3993	7970	7970					-0.018182526471264282
DELTHYGH	8	Unmodified	_DELTHYGH_					0	0	0			REV__ENSG00000196839|ENST00000372874|ADA	REV__ENSG00000196839|ENST00000372874|ADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2153625488281	2	486.214506	970.414459	0.2839	0.00013804	-0.52177	-0.00025369	-0.23787	-0.00011565	486.21447223164955	97.845	3.8348	97.856	95.908	99.743	0.010231					188	88	3	0	0	0	0.95417	1	12481	12481		44.531	0.41427	1	309580	+		6372	28228	3978	3994	7971	7971					-0.07193139555761263
DELTHYGH	8	Unmodified	_DELTHYGH_					0	0	0			REV__ENSG00000196839|ENST00000372874|ADA	REV__ENSG00000196839|ENST00000372874|ADA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7843933105469	2	486.214506	970.414459	-0.18784	-9.1331E-05	1.2685	0.00061674	1.0806	0.00052541	486.2148780163743	101.86	1.5269	101.85	101.19	102.72	-0.0054474					69	34	3	0	0	0	0.027866	1	12876	12876		24.203	0	1	48061	+		6373	28228	3978	3994	7972	7972					-0.07193139555761263
DELTLKGKR	9	Unmodified	_DELTLKGKR_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.7588500976562	2	530.31148	1058.60841	0.93291	0.00049473	-4.3757	-0.0023205	-3.4428	-0.0018258	530.3091882672139	96.727	0.6181	96.727	96.44	97.058	-3.0518E-05					25	13	2	0	0	0	0.024344	1	12275	12275		54.776	13.998	1	160480	+		6374	26770	3979	3995	7973	7973					0.08144816880326289
DELVIINNQ	9	Unmodified	_DELVIINNQ_					0	0	0			REV__ENST00000489926.6_1_2:99725972-99757602:-|nuORF	REV__ENST00000489926.6_1_2:99725972-99757602:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8035888671875	2	529.279846	1056.54514	-0.67125	-0.00035528	-1.0577	-0.0005598	-1.7289	-0.00091508	529.2789280925479	64.345	1.5535	64.083	63.397	64.95	-0.2626					61	41	3	0	0	0	0.024405	1	7523	7523		35.618	0	1	1177200	+		6375	33352	3980	3996	7974	7974					0.019128313724195323
DELVLDYTL	9	Unmodified	_DELVLDYTL_					0	0	0			REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.805419921875	2	540.776605	1079.53866	0.6772	0.00036621	-4.2268	-0.0022858	-3.5496	-0.0019196	540.7743090310777	59.59	0.55566	59.59	59.257	59.813	0					27	14	3	0	0	0	0.024292	1	6838	6838		68.787	24.41	1	521950	+		6376	29010	3981	3997	7975	7975					0.0020689342104560637
DELVPIVKV	9	Unmodified	_DELVPIVKV_					0	0	0			REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.30767822265625	2	506.307875	1010.6012	-0.71844	-0.00036375	0.49626	0.00025126	-0.22219	-0.0001125	506.3080906255929	84.017	1.1096	84.017	83.477	84.587	0					66	25	5	0	0	0	0.4752	1	10503	10503		60.972	5.4677	1	983930	+		6377	21371	3982	3998	7976	7976					0.09632084279905939
DELVPIVKV	9	Unmodified	_DELVPIVKV_					0	0	0			REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.3083190917969	2	506.307875	1010.6012	0.49317	0.0002497	-0.48693	-0.00024654	0.0062378	3.1582E-06	506.30748460904033	83.987	1.1091	83.818	83.369	84.478	-0.16916					59	25	4	0	0	0	0.77768	1	10146	10146		40.778	0.20554	1	1437800	+		6378	21371	3982	3998	7977	7977					0.09632084279905939
DELVPIVKV	9	Unmodified	_DELVPIVKV_					0	0	0			REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	REV__ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.3082580566406	2	506.307875	1010.6012	0.15853	8.0265E-05	0.051471	2.606E-05	0.21	0.00010633	506.3077712435844	83.991	1.2368	83.853	83.383	84.62	-0.13789					60	28	4	0	0	0	0.89441	1	10160	10160		32.812	0.85756	1	1196600	+		6379	21371	3982	3998	7978	7978					0.09632084279905939
DELYVQNRLDS	11	Unmodified	_DELYVQNRLDS_					0	0	0			REV__nc|ENSG00000158062|Q5T124-3|UBXN11	REV__nc|ENSG00000158062|Q5T124-3|UBXN11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2539367675781	3	451.221129	1350.64156	-0.19975	-9.0132E-05	-1.6709	-0.00075396	-1.8707	-0.00084409	451.22037613065106	36.851	0.3844	36.889	36.579	36.963	0.03804					22	9	3	0	0	0	0.024757	1	2899	2899		35.178	0	1	116180	+		6380	25169	3983	3999	7979	7979					-0.019736458582883643
DEMDECNI	8	Unmodified	_DEMDECNI_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7984619140625	2	484.670425	967.326297	1.481	0.00071778	-2.3849	-0.0011559	-0.90391	-0.0004381	484.6699500190063	59.05	0.21259	58.863	58.758	58.971	-0.18705					7	5	2	0	0	0	0.027866	1	6682	6682		30.504	0	1	90499	+		6381	22996	3984	4000	7980	7980					-0.15867264252904079
DEMEIGYIQA	10	Unmodified	_DEMEIGYIQA_					0	0	0		ENST00000468945.1_1_1:17672544-17674609:+|nuORF;ENSG00000159339|ENST00000375448|PADI4	ENST00000468945.1_1_1:17672544-17674609:+|nuORF	ENST00000468945.1_1_1:17672544-17674609:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2996826171875	2	584.763171	1167.51179	-1.0168	-0.00059458	3.4075	0.0019926	2.3907	0.001398	584.7652424363073	44.082	0.35843	43.978	43.741	44.099	-0.10468					13	9	2	0	0	0	0.03519	1	4091	4091		32.812	2.9709	1	171230			6382	6739	3985	4001	7981	7981					-0.06526538461753262
DEMFPLQV	8	Unmodified	_DEMFPLQV_					0	0	0			REV__ENSG00000079246|ENST00000392132|XRCC5	REV__ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.25152587890625	2	489.733686	977.452819	-0.51225	-0.00025087	4.3202	0.0021157	3.8079	0.0018649	489.73578571803307	73.297	0.3722	73.307	73.068	73.44	0.0096512					12	9	2	0	0	0	0.027866	1	8884	8884		17.365	0	1	85145	+		6383	20629	3986	4002	7982	7982					-0.03680969965444092
DEMKGSKDISS	11	Unmodified	_DEMKGSKDISS_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.810791015625	2	598.77681	1195.53907	-0.47332	-0.00028341	-1.1144	-0.00066726	-1.5877	-0.00095067	598.7760971243588	73.86	0.44943	73.584	73.327	73.776	-0.2769					20	11	2	0	0	0	0.024727	1	8694	8694		10.587	0	1	579890			6384	6194	3987	4003	7983	7983					-0.05088054921384355
DENAFANL	8	Unmodified	_DENAFANL_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.2398376464844	2	447.203607	892.392661	-0.48841	-0.00021842	-4.3583	-0.0019491	-4.8467	-0.0021675	447.201859174479	54.336	0.13567	54.2	54.119	54.255	-0.13617					5	3	2	0	0	0	0.027866	1	5776	5776		51.335	18.523	1	79989	+		6385	28893	3988	4004	7984	7984					-0.057839443043235406
DENALKLSIRE	11	Unmodified	_DENALKLSIRE_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	429.9023742675781	3	429.90162	1286.68303	0.34453	0.00014811	1.2903	0.00055468	1.6348	0.00070279	429.9020722897637	110.42	0.83455	110.43	110.12	110.96	0.0066528					70	24	4	0	0	0	1.0521	1	13904	13904		21.78	6.4429	1	652700	+		6386	20232	3989	4005	7985	7985					0.051155349010286955
DENCFEDAV	9	Unmodified	_DENCFEDAV_					0	0	0		ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.7661743164062	2	521.195122	1040.37569	-1.006	-0.00052432	3.3894	0.0017665	2.3834	0.0012422	521.697133811774	47.328	0.20938	47.388	47.214	47.423	0.059097					7	5	2	0	0	0	0.024457	1	4678	4678		37.159	19.794	1	59874			6387	5419	3990	4006	7986	7986					-0.14288232972444348
DENERIKNI	9	Unmodified	_DENERIKNI_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.8253173828125	2	565.793652	1129.57275	0.061233	3.4645E-05	-2.6815	-0.0015172	-2.6202	-0.0014825	565.791828486064	100.94	0.94473	100.77	100.66	101.6	-0.17178					32	22	2	0	0	0	0.023842	1	12524	12524		58.23	18.172	1	47884	+		6388	26810;37445	3991	4007	7987	7987					0.013147346326604747
DENERIKNI	9	Unmodified	_DENERIKNI_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.793652	1129.57275	-0.39806	-0.00022522	-1.5935	-0.00090158	-1.9915	-0.0011268	565.7919810065218	100.77	0.71357	100.77	100.69	101.4	-0.0054474	0.033072	0.0010627	NaN	58.23	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76156	+		6389	26810;37445	3991	4007							0.013147346326604747
DENLLNNKV	9	Unmodified	_DENLLNNKV_					0	0	0			REV__ENSG00000124507|ENST00000244458|PACSIN1	REV__ENSG00000124507|ENST00000244458|PACSIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.79052734375	2	529.77747	1057.54039	-0.94876	-0.00050263	2.9289	0.0015517	1.9802	0.001049	529.7789434312795	104.53	0.81884	104.4	104.18	105	-0.12927					46	24	3	0	0	0	0.024319	1	13006	13006		47.657	8.4045	1	272150	+		6390	22768	3992	4008	7988	7988					0.01391947229649304
DENLPLVNP	9	Unmodified	_DENLPLVNP_					0	0	0			REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7808532714844	2	505.761289	1009.50803	1.4564	0.00073661	2.6972	0.0013642	4.1537	0.0021008	505.76376755447575	82.572	1.1549	82.462	82.168	83.323	-0.11006					38	26	2	0	0	0	0.024523	1	10372	10372		29.15	14.285	1	72555	+		6391	22515	3993	4009	7989	7989					0.0036515982666287528
DENLPLVNP	9	Unmodified	_DENLPLVNP_					0	0	0			REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	REV__nc|ENSG00000120160|Q9NQ60-2|EQTN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.761289	1009.50803	0.14673	7.421E-05	5.1724	0.002616	5.3191	0.0026902	505.7643825758529	82.901	0.9507	82.72	82.114	83.064	-0.18079	0.12665	0.000337	NaN	21.96	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82370	+		6392	22515	3993	4009							0.0036515982666287528
DENRVGLVEM	10	Unmodified	_DENRVGLVEM_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	580.8064575195312	2	581.282063	1160.54957	-0.074687	-4.3414E-05	1.6028	0.00093165	1.5281	0.00088824	581.2828533736421	49.964	0.48477	49.784	49.532	50.017	-0.18071					20	12	2	0	0	0	0.03519	1	5009	5009		21.686	0	1	189470	+		6393	25596	3994	4010	7990	7990					-0.024280274762986664
DENRVGLVEM	10	Unmodified	_DENRVGLVEM_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	581.282063	1160.54957	0.10642	6.1861E-05	1.2659	0.00073582	1.3723	0.00079768	581.2828823481759	49.944	0.40971	49.839	49.562	49.972	-0.10558	-0.00044782	-0.00058777	NaN	11.097	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152460	+		6394	25596	3994	4010							-0.024280274762986664
DENRVGLVEM	10	Unmodified	_DENRVGLVEM_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.282063	1160.54957	-0.71339	-0.00041468	3.5541	0.0020659	2.8407	0.0016512	581.2842429209761	50.174	0.56572	49.895	49.693	50.258	-0.27977	0.055708	0.0020724	NaN	11.097	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193430	+		6395	25596	3994	4010							-0.024280274762986664
DENVFILEL	9	Unmodified	_DENVFILEL_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2867431640625	2	546.284597	1090.55464	0.29669	0.00016207	2.8037	0.0015316	3.1004	0.0016937	546.2859149760867	84.381	1.06	84.178	83.82	84.88	-0.20329					50	24	3	0	0	0	0.03849	1	10191	10191		134.81	7.3491	1	1168300	+		6396	25794	3995	4011	7991	7991					0.012985996579345738
DENVFILEL	9	Unmodified	_DENVFILEL_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2863159179688	2	546.284597	1090.55464	0.53278	0.00029105	2.2806	0.0012459	2.8134	0.0015369	546.2856507694288	84.322	0.85602	84.163	83.801	84.657	-0.15869					43	19	3	0	0	0	0.082191	1	10213	10213		116.9	4.4927	1	1226100	+		6397	25794	3995	4011	7992	7992					0.012985996579345738
DENVFILEL	9	Unmodified	_DENVFILEL_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2864379882812	2	546.284597	1090.55464	0.022071	1.2057E-05	2.8672	0.0015663	2.8893	0.0015784	546.285987728168	84.327	1.0229	84.189	83.845	84.868	-0.13789					57	23	3	0	0	0	0.11092	1	10173	10173		108.09	12.272	1	1150300	+		6398	25794	3995	4011	7993	7993					0.012985996579345738
DEPALYPCCSH	11	Unmodified	_DEPALYPCCSH_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	616.7981567382812	2	617.746998	1233.47944	-0.86759	-0.00053595	0.44899	0.00027736	-0.4186	-0.00025859	617.7470027693646	45.946	0.58857	45.744	45.492	46.081	-0.20226					35	15	3	0	0	0	0.024756	1	4427	4427		29.17	10.067	1	739490			6399	6401	3996	4012	7994	7994					-0.12795649136432985
DEPFSDFNST	10	Unmodified	_DEPFSDFNST_					0	0	0			REV__ENSG00000185532|ENST00000373980|PRKG1;REV__nc|ENSG00000185532|Q13976|PRKG1	REV__ENSG00000185532|ENST00000373980|PRKG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.3031616210938	2	579.732926	1157.4513	-2.0053	-0.0011626	-4.0281	-0.0023352	-6.0335	-0.0034978	579.7302939552674	65.302	0.24662	65.099	64.899	65.146	-0.20254					10	5	2	0	0	0	0.03519	1	7446	7446		16.717	13.999	1	64262	+		6400	27770;37015	3997	4013	7995	7995					-0.12112932520540198
DEPHFLSH	8	Unmodified	_DEPHFLSH_					0	0	0			REV__ENST00000596333.1_1_19:51358187-51361618:+|nuORF	REV__ENST00000596333.1_1_19:51358187-51361618:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.8034973144531	2	491.224874	980.435195	-0.79946	-0.00039272	4.4175	0.00217	3.6181	0.0017773	491.22698485867426	35.976	1.2059	35.976	35.164	36.37	0					51	32	2	0	0	0	0.027866	1	2739	2739		52.299	25.606	1	203160	+		6401	24159	3998	4014	7996	7996					-0.055805491761020676
DEPIIKLKKRI	11	Unmodified	_DEPIIKLKKRI_					0	0	0			REV__ENSG00000121064|ENST00000262288|SCPEP1	REV__ENSG00000121064|ENST00000262288|SCPEP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.26983642578125	3	451.62565	1351.85512	0.11362	5.1312E-05	-2.8085	-0.0012684	-2.6949	-0.0012171	451.6245978106334	47.026	0.6473	46.873	46.514	47.161	-0.15301					33	16	3	0	0	0	0.024828	1	4673	4673		9.2118	0	1	212250	+		6402	22577	3999	4015	7997	7997					0.19326731379214834
DEPIQPIDP	9	Unmodified	_DEPIQPIDP_					0	0	0		ENST00000571745.1_1_17:7130492-7131139:-|nuORF	ENST00000571745.1_1_17:7130492-7131139:-|nuORF	ENST00000571745.1_1_17:7130492-7131139:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2637023925781	2	512.253297	1022.49204	-0.26561	-0.00013606	2.3656	0.0012118	2.1	0.0010757	512.254424286233	80.918	0.2886	80.772	80.692	80.981	-0.146					9	6	2	0	0	0	0.024412	1	9720	9720		24.203	6.8378	1	71277			6403	17045	4000	4016	7998	7998					-0.018305464102354563
DEPKVSTLN	9	Unmodified	_DEPKVSTLN_					0	0	0			REV__nc|ENSG00000172116|P10966-4|CD8B	REV__nc|ENSG00000172116|P10966-4|CD8B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7870178222656	2	501.758746	1001.50294	-0.49318	-0.00024746	0.12605	6.3246E-05	-0.36713	-0.00018421	501.75902331611957	60.25	0.85657	60.05	59.761	60.618	-0.20016					29	22	2	0	0	0	0.024381	1	6947	6947		45.952	15.448	1	166770	+		6404	36938	4001	4017	7999	7999					0.002248559640520398
DEPLAAGRL	9	Unmodified	_DEPLAAGRL_					0	0	0		ENST00000554997.1_1_14:64676435-64676651:+|nuORF	ENST00000554997.1_1_14:64676435-64676651:+|nuORF	ENST00000554997.1_1_14:64676435-64676651:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2559814453125	2	471.256174	940.497795	-0.66154	-0.00031176	0.43998	0.00020734	-0.22156	-0.00010441	471.2562488597971	44.77	0.99105	44.621	44.222	45.214	-0.1488					67	28	4	0	0	0	0.31247	1	4288	4288		73.975	2.679	1	3680100			6405	16668	4002	4018	8000	8000					0.025165968920987325
DEPLEQNQN	9	Unmodified	_DEPLEQNQN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.7369995117188	2	543.738542	1085.46253	-1.0481	-0.0005699	-2.666	-0.0014496	-3.7141	-0.0020195	543.7369310159548	76.293	0.9285	76.064	75.598	76.526	-0.22843					58	23	3	0	0	0	0.23085	1	9373	9373		84.916	18.486	1	828510	+		6406	23540	4003	4019	8001	8001					-0.07678110426354579
DEPLEQNQN	9	Unmodified	_DEPLEQNQN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.738542	1085.46253	-1.0291	-0.00055957	-1.8108	-0.00098458	-2.8399	-0.0015442	543.7368335140642	76.13	1.0197	76.13	75.659	76.678	0	0.04146	0.00090065	NaN	84.916	84	25	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836680	+		6407	23540	4003	4019							-0.07678110426354579
DEPLEQNQN	9	Unmodified	_DEPLEQNQN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	543.738542	1085.46253	-1.0481	-0.0005699	-2.666	-0.0014496	-3.7141	-0.0020195	543.7369310159548	76.293	0.9285	76.064	75.598	76.526	-0.22843	-0.023916	-2.9394E-05	NaN	84.916	58	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828510	+		6408	23540	4003	4019							-0.07678110426354579
DEPLEQNQN	9	Unmodified	_DEPLEQNQN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.738542	1085.46253	-0.43833	-0.00023834	-2.4541	-0.0013344	-2.8924	-0.0015727	543.7365944091066	75.904	1.0836	75.916	75.61	76.694	0.011635	-0.17258	0.0002011	NaN	84.916	81	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761650	+		6409	23540	4003	4019							-0.07678110426354579
DEPLEQNQN	9	Unmodified	_DEPLEQNQN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.738542	1085.46253	-0.49799	-0.00027078	-3.253	-0.0017688	-3.751	-0.0020396	543.7365974195235	76.48	0.6009	76.212	75.779	76.38	-0.26807	0.12407	-0.00066777	NaN	84.916	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83732	+		6410	23540	4003	4019							-0.07678110426354579
DEPLEQNQN	9	Unmodified	_DEPLEQNQN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.738542	1085.46253	-0.22713	-0.0001235	-3.3932	-0.001845	-3.6203	-0.0019685	543.7365028463339	76.339	0.76237	76.088	75.679	76.442	-0.25162	-0.00069951	-0.00082021	NaN	84.916	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80708	+		6411	23540	4003	4019							-0.07678110426354579
DEPLEQNQN	9	Unmodified	_DEPLEQNQN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.738542	1085.46253	-0.619	-0.00033658	-2.9529	-0.0016056	-3.5719	-0.0019422	543.7368213878623	76.289	0.64882	76.12	75.703	76.352	-0.16854	0.031671	-0.00034136	NaN	84.916	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70449	+		6412	23540	4003	4019							-0.07678110426354579
DEPLERRLSL	10	Unmodified	_DEPLERRLSL_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.880126953125	3	409.894577	1226.6619	1.437	0.00058904	-3.6802	-0.0015085	-2.2432	-0.00091946	409.8930237890262	33.135	0.46579	33.192	32.995	33.461	0.056572					19	12	3	0	0	0	0.03519	1	2302	2302		10.587	0	1	134420			6413	722	4004	4020	8002	8002					0.05763569592181739
DEPLLQWHQAE	11	Unmodified	_DEPLLQWHQAE_					0	0	0			REV__nc|ENSG00000138623|O75326-2|SEMA7A	REV__nc|ENSG00000138623|O75326-2|SEMA7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.8875732421875	3	455.88597	1364.63608	-0.61694	-0.00028125	4.0654	0.0018534	3.4485	0.0015721	455.8881236245089	37.8	2.3011	37.832	37.413	39.714	0.032269					183	63	6	0	0	0	0.72615	1	3103	3103		62.166	1.9992	1	25561000	+		6414	23870	4005	4021	8003	8003					-0.03165324650080947
DEPPGEPPL	9	Unmodified	_DEPPGEPPL_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7879638671875	2	475.726915	949.439277	1.0947	0.00052077	2.9782	0.0014168	4.0729	0.0019376	475.72823608904355	59.657	0.48134	59.456	59.172	59.654	-0.20016					20	12	2	0	0	0	0.024381	1	6818	6818		45.952	1.8352	1	123050	+		6415	27830	4006	4022	8004	8004					-0.03746504473042478
DEPSKGHTK	9	Unmodified	_DEPSKGHTK_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3135986328125	2	499.748713	997.482873	-0.31457	-0.00015721	-2.2119	-0.0011054	-2.5264	-0.0012626	499.7472102816209	76.064	1.216	75.895	75.436	76.652	-0.16853					43	29	2	0	0	0	0.02438	1	8986	8986		38.754	8.4359	1	92692	+		6416	27307	4007	4023	8005	8005					-0.015968949759098905
DEPSVEVTYL	10	Unmodified	_DEPSVEVTYL_					0	0	0		ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.8060913085938	2	576.276969	1150.53938	-0.44204	-0.00025474	-2.2468	-0.0012948	-2.6888	-0.0015495	576.275699363055	27.47	0.58393	27.314	27.061	27.645	-0.15664					35	13	4	0	0	0	0.03519	1	1465	1465		34.173	12.213	1	373460			6417	7640	4008	4024	8006	8006					-0.029863119298852325
DEPSVEVTYL	10	Unmodified	_DEPSVEVTYL_					0	0	0		ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.276969	1150.53938	-0.16821	-9.6935E-05	-2.4014	-0.0013839	-2.5696	-0.0014808	576.2754536968091	27.605	0.56204	27.363	27.076	27.638	-0.24217	0.043547	-0.00058109	NaN	34.173	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289290			6418	7640	4008	4024							-0.029863119298852325
DEPSVEVTYL	10	Unmodified	_DEPSVEVTYL_					0	0	0		ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.276969	1150.53938	-1.0059	-0.00057967	-1.4468	-0.00083374	-2.4527	-0.0014134	576.2760379404018	27.451	0.87385	27.282	27.013	27.887	-0.16816	-0.037321	0.00051916	NaN	34.173	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385930			6419	7640	4008	4024							-0.029863119298852325
DEPVSQNAR	9	Unmodified	_DEPVSQNAR_					0	0	0			REV__ENSG00000184735|ENST00000327968|DDX53	REV__ENSG00000184735|ENST00000327968|DDX53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2919006347656	2	508.243795	1014.47304	0.15197	7.7238E-05	-3.1763	-0.0016144	-3.0244	-0.0015371	508.2419161788203	50.25	0.78632	50.145	49.745	50.531	-0.10558					50	20	4	0	0	0	0.024374	1	5141	5141		40.778	14.085	1	1771400	+		6420	27698	4009	4025	8007	8007					-0.0336208298128895
DEPYAHWT	8	Unmodified	_DEPYAHWT_					0	0	0			REV__ENSG00000094916|ENST00000209875|CBX5	REV__ENSG00000094916|ENST00000209875|CBX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.7907409667969	2	509.716882	1017.41921	-0.91949	-0.00046868	-3.2512	-0.0016572	-4.1707	-0.0021259	509.714788626751	60.875	0.3497	60.621	60.463	60.813	-0.25374					14	8	2	0	0	0	0.027866	1	6795	6795		35.201	15.841	1	66623	+		6421	20953	4010	4026	8008	8008					-0.08880255412998395
DEPYEFSI	8	Unmodified	_DEPYEFSI_					0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7875061035156	2	500.218923	998.423293	-1.5736	-0.00078712	0.64577	0.00032303	-0.92778	-0.00046409	500.21897205456804	60.535	0.47943	60.614	60.318	60.797	0.078884					15	12	2	0	0	0	0.027866	1	6854	6854		18.324	0	1	82272	+		6422	19097	4011	4027	8009	8009					-0.07598210709932118
DEQDQWKTAGL	11	Unmodified	_DEQDQWKTAGL_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.8861999511719	3	430.870208	1289.58879	-0.70229	-0.0003026	-1.332	-0.00057393	-2.0343	-0.00087652	430.8697452068379	21.955	0.34001	22.026	21.83	22.17	0.071487					12	6	2	0	0	0	0.024756	1	660	660		38.714	10.137	1	12675			6423	18471	4012	4028	8010	8010					-0.044416039210773306
DEQFAAIIV	9	Unmodified	_DEQFAAIIV_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2686462402344	2	503.266207	1004.51786	0.6203	0.00031218	2.4152	0.0012155	3.0355	0.0015276	503.2671101528774	71.287	1.5544	71.287	70.241	71.795	0					102	38	3	0	0	0	0.67687	1	8562	8562		47.657	3.5405	1	1599600			6424	1558	4013	4029	8011	8011					0.015783478320372524
DEQKELQAL	9	Unmodified	_DEQKELQAL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.79541015625	2	537.277303	1072.54005	-0.092369	-4.9628E-05	3.4107	0.0018325	3.3183	0.0017829	537.7806188738795	88.369	0.51714	88.387	88.195	88.713	0.018555					15	11	2	0	0	0	0.02438	1	11101	11101		31.634	9.9485	1	78938			6425	3392	4014	4030	8012	8012					0.006685275098107013
DEQLFKPVN	9	Unmodified	_DEQLFKPVN_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.2908935546875	2	545.282389	1088.55022	-0.71184	-0.00038815	-4.0663	-0.0022173	-4.7781	-0.0026054	545.2802832863065	53.825	0.37976	53.92	53.806	54.186	0.095669					12	10	2	0	0	0	0.024457	1	5777	5777		37.159	5.2042	1	177850	+		6426	22148	4015	4031	8013	8013					0.009491352350551097
DEQLIFKQN	9	Unmodified	_DEQLIFKQN_					0	0	0			REV__nc|ENSG00000119514|Q8IXK2-2|GALNT12	REV__nc|ENSG00000119514|Q8IXK2-2|GALNT12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3129272460938	2	567.793121	1133.57169	-0.23532	-0.00013362	-1.7761	-0.0010085	-2.0114	-0.0011421	568.294178347462	61.324	0.34368	61.324	61.07	61.414	0					10	8	2	0	0	0	0.023817	1	7090	7090		60.972	0	1	333480	+		6427	22461	4016	4032	8014	8014					0.010245202637634065
DEQLLLEL	8	Unmodified	_DEQLLLEL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.C349Yfs*23|1|0.16|ENSG00000086758|chrX:53628819-53628820|AC/-|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;REV__ENSG00000179094|ENST00000317276|PER1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3033142089844	2	486.76604	971.517527	-0.085742	-4.1736E-05	-2.8642	-0.0013942	-2.9499	-0.0014359	486.76476315052565	20.054	0.52798	19.887	19.718	20.246	-0.16774					13	10	2	0	0	0	0.027866	1	518	518		94.006	0	1	53507			6428	1825;27236	4017	4033	8015	8015					0.030629281121719032
DEQSKILY	8	Unmodified	_DEQSKILY_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.255126953125	2	498.25584	994.497126	-0.54935	-0.00027372	0.77302	0.00038516	0.22367	0.00011144	498.2560415582344	62.372	1.2789	62.114	61.048	62.327	-0.25824					62	31	4	0	0	0	0.6248	1	6996	6996		73.975	2.679	1	2251700	+		6429	28678	4018	4034	8016	8016					-0.0003424254762194323
DEQSNIVDI	9	Unmodified	_DEQSNIVDI_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2717895507812	2	516.745836	1031.47712	-1.4018	-0.00072436	-0.76948	-0.00039763	-2.1713	-0.001122	516.7450882221651	39.38	1.0474	39.404	38.727	39.775	0.023727					43	28	2	0	0	0	0.024323	1	3359	3359		35.618	15.136	1	128280			6430	6649	4019	4035	8017	8017					-0.03736038278248088
DEQVKHFFNL	10	Unmodified	_DEQVKHFFNL_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2561950683594	3	426.215539	1275.62479	-0.17545	-7.4778E-05	-2.7967	-0.001192	-2.9721	-0.0012668	426.2142794495585	35.875	0.58863	35.919	35.616	36.205	0.04406					43	15	4	0	0	0	0.03519	1	2695	2695		14.694	0	1	760120			6431	10871	4020	4036	8018	8018					-0.002001019535555315
DEQVSSLQKAR	11	Unmodified	_DEQVSSLQKAR_					0	0	0			REV__nc|ENSG00000025770|Q6IBW4-2|NCAPH2	REV__nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8467102050781	3	420.889603	1259.64698	-0.14768	-6.2156E-05	3.1117	0.0013097	2.964	0.0012475	420.8908904977735	33.004	0.65076	32.773	32.503	33.153	-0.23107					18	15	2	0	0	0	0.024746	1	2362	2362		18.332	0	1	153790	+		6432	20022	4021	4037	8019	8019					0.027540777241711112
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.7694702148438	2	528.769645	1055.52474	-0.48407	-0.00025596	0.13996	7.4009E-05	-0.34411	-0.00018195	528.769694622091	40.275	0.9915	40.275	40.024	41.016	0					48	27	2	0	0	0	0.057894	2	3520	3520;3529		125.81	37.171	1	8498300			6433	17279	4022	4038	8020;8021	8020					-0.0008033928741042473
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.7698364257812	2	528.769645	1055.52474	-0.065221	-3.4487E-05	-0.16872	-8.9216E-05	-0.23394	-0.0001237	528.7694962160418	40.373	1.4237	40.261	39.603	41.027	-0.11223					56	38	2	0	0	0	0.016871	1	3519	3519		152.47	48.414	1	8138100			6434	17279	4022	4038	8022	8022					-0.0008033928741042473
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.769645	1055.52474	-0.61628	-0.00032587	-0.01155	-6.1075E-06	-0.62783	-0.00033198	528.7696278102454	40.476	1.2378	40.499	39.873	41.111	0.023003	0.15374	2.3733E-05	NaN	152.47	58	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9073300			6435	17279	4022	4038							-0.0008033928741042473
DERATMHLS	9	Oxidation (M)	_DERATM(Oxidation (M))HLS_		DERATM(1)HLS		DERATM(72)HLS	0	0	1			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.243408203125	2	538.24548	1074.47641	-1.5867	-0.00085406	-0.71689	-0.00038586	-2.3036	-0.0012399	538.2457913956628	55.469	1.4948	55.567	55.257	56.752	0.098011					95	40	5	0	0	0	0.32811	1	6046	6046		71.877	6.4121	1	10652000	+		6436	23894	4023	4039	8023	8023		708			-0.057851561989537004
DERATMHLS	9	Oxidation (M)	_DERATM(Oxidation (M))HLS_		DERATM(1)HLS		DERATM(77)HLS	0	0	1			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.24462890625	2	538.24548	1074.47641	-1.1984	-0.00064505	-2.3073	-0.0012419	-3.5058	-0.001887	538.2442843963282	55.781	0.58214	55.624	55.312	55.894	-0.15655					52	15	5	0	0	0	0.29158	1	6022	6022		76.774	17.992	1	10777000	+		6437	23894	4023	4039	8024	8024		708			-0.057851561989537004
DERATMHLS	9	Oxidation (M)	_DERATM(Oxidation (M))HLS_		DERATM(1)HLS		DERATM(77)HLS	0	0	1			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2445678710938	2	538.24548	1074.47641	-1.9393	-0.0010438	1.0288	0.00055377	-0.91044	-0.00049004	538.2448062933165	55.948	1.03	55.733	55.168	56.198	-0.21551					75	27	5	0	0	0	0.29158	1	6018	6018		76.774	11.309	1	10404000	+		6438	23894	4023	4039	8025	8025		708			-0.057851561989537004
DERERKVE	8	Unmodified	_DERERKVE_					0	0	0		nc|ENSG00000183798|Q9NT22-2|EMILIN3;ENSG00000183798|ENST00000332312|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8031616210938	2	530.772719	1059.53089	-0.48823	-0.00025914	-2.9676	-0.0015751	-3.4558	-0.0018343	530.7711661562477	64.426	0.55758	64.426	64.168	64.725	0					23	14	2	0	0	0	0.027866	1	7559	7559		29.15	1.2673	1	460810			6439	9277	4024	4040	8026	8026					0.003501789441543224
DERESKTI	8	Unmodified	_DERESKTI_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;nc|ENSG00000003756|P52756-4|RBM5;nc|ENSG00000003756|P52756-2|RBM5;ENST00000492472.1_1_3:50127867-50131398:+|nuORF;nc|ENSG00000003756|P52756-5|RBM5;ENST00000464087.6_1_3:50127867-50138068:+|nuORF;RBM5|p.Q295Efs*9|1|0.61|ENSG00000003756|chr3:50106793-50106794|AC/-|frameshift_variant	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265625	2	489.248546	976.482539	-1.1659	-0.0005704	-1.3149	-0.00064332	-2.4808	-0.0012137	489.24854050196086	55.888	0.54677	55.731	55.386	55.933	-0.15656					31	14	3	0	0	0	0.027866	1	5992	5992		55.504	0	1	819960			6440	733	4025	4041	8027	8027					-0.006643146957458157
DERFLVLIN	9	Unmodified	_DERFLVLIN_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8138427734375	2	559.813856	1117.61316	-0.26775	-0.00014989	0.82023	0.00045917	0.55247	0.00030928	559.8140454732616	76.454	1.2428	76.454	75.516	76.759	0					66	31	4	0	0	0	0.53979	1	9422	9422		56.721	0	1	1638400			6441	653	4026	4042	8028	8028					0.05905701023107213
DERFLVLIN	9	Unmodified	_DERFLVLIN_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8138427734375	2	559.813856	1117.61316	-0.68008	-0.00038072	0.8962	0.0005017	0.21611	0.00012098	559.8143184803071	76.595	1.1795	76.366	75.633	76.813	-0.22843					67	29	5	0	0	0	0.77768	1	9421	9421		40.778	0	1	1527200			6442	653	4026	4042	8029	8029					0.05905701023107213
DERGPLIGQ	9	Unmodified	_DERGPLIGQ_					0	0	0			REV__ENST00000358726.6_1_19:16763368-16763446:-|nuORF	REV__ENST00000358726.6_1_19:16763368-16763446:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2698059082031	2	492.759081	983.503609	-0.94578	-0.00046604	-2.8704	-0.0014144	-3.8162	-0.0018804	492.75763265290027	44.477	0.62244	44.257	44.006	44.628	-0.21938					27	16	2	0	0	0	0.024484	1	4177	4177		30.318	6.115	1	851860	+		6443	30861	4027	4043	8030	8030					0.011196954037814066
DERGPLIGQ	9	Unmodified	_DERGPLIGQ_					0	0	0			REV__ENST00000358726.6_1_19:16763368-16763446:-|nuORF	REV__ENST00000358726.6_1_19:16763368-16763446:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.759081	983.503609	-1.1694	-0.00057625	-9.5683	-0.0047148	-10.738	-0.0052911	492.75406238318396	44.4	0.19378	44.255	44.099	44.292	-0.14471	0.025413	-0.0066196	NaN	37.812	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171910	+		6444	30861	4027	4043							0.011196954037814066
DERGPLIGQ	9	Unmodified	_DERGPLIGQ_					0	0	0			REV__ENST00000358726.6_1_19:16763368-16763446:-|nuORF	REV__ENST00000358726.6_1_19:16763368-16763446:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.759081	983.503609	-0.78514	-0.00038689	-2.847	-0.0014029	-3.6322	-0.0017898	492.75750617894334	44.471	0.73773	44.227	43.94	44.678	-0.2444	-0.0023906	4.2836E-06	NaN	37.812	38	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633210	+		6445	30861	4027	4043							0.011196954037814066
DERIFLCQGK	10	Unmodified	_DERIFLCQGK_					0	0	0		ENST00000528533.5_1_11:119181936-119187838:-|nuORF;ENST00000525586.5_1_11:119185190-119185971:-|nuORF;ENSG00000076706|ENST00000264036|MCAM	ENST00000528533.5_1_11:119181936-119187838:-|nuORF	ENST00000528533.5_1_11:119181936-119187838:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5111083984375	3	403.541257	1207.60194	-0.52479	-0.00021178	-2.6856	-0.0010837	-3.2104	-0.0012955	403.54015376047727	32.381	0.57344	32.224	31.991	32.564	-0.15772					24	13	2	0	0	0	0.03519	1	2182	2182		24.232	4.2013	1	439520			6446	16184	4028	4044	8031	8031					0.006445556572771238
DERKVNEL	8	Unmodified	_DERKVNEL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7846374511719	2	501.764363	1001.51417	0.24054	0.00012069	4.4136	0.0022146	4.6541	0.0023353	501.76632655425084	71.961	0.76917	71.699	71.403	72.173	-0.26199					41	18	3	0	0	0	0.027866	1	8466	8466		47.657	0	1	694450			6447	1175	4029	4045	8032	8032					0.013476780581868297
DERLKQKAE	9	Unmodified	_DERLKQKAE_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18;SIL1-DNAJC18|1|fusion	ENSG00000170464|ENST00000302060|DNAJC18;SIL1-DNAJC18|1|fusion	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.8035888671875	2	558.80402	1115.59349	-0.32672	-0.00018257	-0.41019	-0.00022922	-0.73691	-0.00041179	558.8037595247166	49.189	0.89643	48.909	48.538	49.434	-0.27977					69	23	4	0	0	0	0.42604	1	4914	4914		64.207	5.4253	1	7262600			6448	8043;37874	4030	4046	8033	8033					0.040313250123290345
DERPGTKVF	9	Unmodified	_DERPGTKVF_					0	0	0		ENST00000251810.7_1_8:103218984-103219068:-|nuORF	ENST00000251810.7_1_8:103218984-103219068:-|nuORF	ENST00000251810.7_1_8:103218984-103219068:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.8209228515625	2	524.774731	1047.53491	-0.89325	-0.00046875	2.2534	0.0011825	1.3601	0.00071376	524.7756583837569	48.353	0.51704	48.077	47.775	48.292	-0.27598					29	13	3	0	0	0	0.024319	1	4786	4786		39.253	7.298	1	934410			6449	11356	4031	4047	8034	8034					0.013042684378433478
DERQCVKCKT	10	Unmodified	_DERQCVKCKT_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5600280761719	3	403.862002	1208.56418	-1.0989	-0.00044381	4.166	0.0016825	3.0671	0.0012387	403.8639851526919	33.341	0.63834	33.175	32.879	33.517	-0.16565					19	15	2	0	0	0	0.03519	1	2326	2326		16.53	13.121	1	250310			6450	3610	4032	4048	8035	8035					-0.03176278599835314
DERSVRDL	8	Unmodified	_DERSVRDL_					0	0	0			REV__nc|ENSG00000164051|Q96ER9-2|CCDC51	REV__nc|ENSG00000164051|Q96ER9-2|CCDC51	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2513427734375	2	495.254163	988.493772	-0.060292	-2.986E-05	-1.8805	-0.0009313	-1.9407	-0.00096116	495.25265433467354	61.054	1.3168	61.125	60.639	61.956	0.071125					44	34	2	0	0	0	0.027866	1	6971	6971		38.806	15.764	1	378130	+		6451	25679	4033	4049	8036	8036					-0.0009349260162707651
DERVAEGTA	9	Unmodified	_DERVAEGTA_					0	0	0			REV__ENSG00000167476|ENST00000300961|JSRP1	REV__ENSG00000167476|ENST00000300961|JSRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2840881347656	2	474.225071	946.435589	0.91539	0.0004341	-2.0285	-0.00096198	-1.1131	-0.00052788	474.22381110730885	53.719	0.43077	53.719	53.545	53.976	0					25	11	3	0	0	0	0.024436	1	5818	5818		23.042	0	1	415830	+		6452	26144	4034	4050	8037	8037					-0.039771742468929006
DERVQQLRRRI	11	Unmodified	_DERVQQLRRRI_					0	0	0		ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2704772949219	3	490.28669	1467.83824	-0.20604	-0.00010102	1.4218	0.0006971	1.2158	0.00059608	490.28709033313146	41.457	0.70387	41.48	41.254	41.958	0.023003					44	19	4	0	0	0	0.024828	1	3692	3692		24.232	10.146	1	328100			6453	10463	4035	4051	8038	8038					0.12303623545972187
DERYLSMPKR	10	Unmodified	_DERYLSMPKR_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.2824401855469	3	432.223928	1293.64996	0.10002	4.323E-05	-1.5315	-0.00066194	-1.4315	-0.00061871	432.2232182613897	51.91	0.68378	51.91	51.667	52.351	0					25	18	2	0	0	0	0.03519	1	5554	5554		35.178	10.052	1	168450			6454	8529	4036	4052	8039	8039					0.014876295773319725
DESAPLPGR	9	Unmodified	_DESAPLPGR_					0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7666015625	2	471.237981	940.461409	1.1708	0.00055173	-0.46264	-0.00021801	0.70817	0.00033372	471.2381246854525	70.981	0.39809	70.981	70.787	71.185	0					15	9	2	0	0	0	0.02435	1	8610	8610		51.335	0	1	238220	+		6455	36572	4037	4053	8040	8040					-0.01120280004624874
DESEKLLY	8	Unmodified	_DESEKLLY_					0	0	0			REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7479248046875	2	498.747847	995.481142	0.66252	0.00033043	-0.65846	-0.0003284	0.0040629	2.0264E-06	498.7473918401215	68.096	0.93447	67.841	67.538	68.472	-0.25516					58	22	4	0	0	0	0.46709	3	7852	7852;7863;7875		88.643	8.7036	1	3351800	+		6456	25383	4038	4054	8041;8042;8043	8041					-0.016779487845155927
DESEKLLY	8	Unmodified	_DESEKLLY_					0	0	0			REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7478942871094	2	498.747847	995.481142	0.30946	0.00015434	-0.22648	-0.00011296	0.082984	4.1388E-05	498.74763220529127	68.091	0.88316	67.858	67.595	68.479	-0.23375					57	21	4	0	0	0	0.39824	3	7875	7852;7863;7875		97.473	19.529	1	3977000	+		6457	25383	4038	4054	8044;8045;8046	8046					-0.016779487845155927
DESEKLLY	8	Unmodified	_DESEKLLY_					0	0	0			REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7476806640625	2	498.747847	995.481142	0.016028	7.9938E-06	-0.11253	-5.6126E-05	-0.096506	-4.8132E-05	498.7476851713309	68.114	1.0852	67.876	67.466	68.552	-0.23814					68	26	4	0	0	0	0.39824	3	7847	7847;7858;7871		97.473	12.113	1	4524600	+		6458	25383	4038	4054	8047;8048;8049	8047					-0.016779487845155927
DESEKLLY	8	Unmodified	_DESEKLLY_					0	0	0			REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	498.747847	995.481142	0.30946	0.00015434	-0.22648	-0.00011296	0.082984	4.1388E-05	498.74763220529127	68.091	0.88316	67.858	67.595	68.479	-0.23375	-0.00054127	5.6658E-05	NaN	97.473	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3977000	+		6459	25383	4038	4054							-0.016779487845155927
DESEQRVL	8	Unmodified	_DESEQRVL_					0	0	0			REV__nc|ENSG00000135679|Q00987-6|MDM2	REV__nc|ENSG00000135679|Q00987-6|MDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2707824707031	2	488.240721	974.466889	-0.28135	-0.00013737	0.23645	0.00011545	-0.044896	-2.192E-05	488.24092359132305	23.359	0.3896	23.179	22.929	23.318	-0.17989					13	8	2	0	0	0	0.027866	1	876	876		18.324	0	1	182940	+		6460	36692	4039	4055	8050	8050					-0.021366012128055445
DESFLELEDY	10	Unmodified	_DESFLELEDY_					0	0	0		DDX28|p.V300E|1|0.21|ENSG00000182810|chr16:68022304-68022304|A/T|missense_variant	DDX28|p.V300E|1|0.21|ENSG00000182810|chr16:68022304-68022304|A/T|missense_variant	DDX28|p.V300E|1|0.21|ENSG00000182810|chr16:68022304-68022304|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	630.2697143554688	2	630.269341	1258.52413	0.33907	0.00021371	-0.57686	-0.00036358	-0.23779	-0.00014987	630.2688564681443	70.713	0.68004	70.499	70.406	71.086	-0.21425					28	16	3	0	0	0	0.82838	1	8251	8251		58.782	2.0609	1	716070			6461	629	4040	4056	8051	8051					-0.09479223517746505
DESIILYNNA	10	Unmodified	_DESIILYNNA_					0	0	0			REV__ENSG00000229292|ENST00000341750|RFPL4AL1	REV__ENSG00000229292|ENST00000341750|RFPL4AL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.328857421875	2	576.282586	1150.55062	-0.77955	-0.00044924	-0.8949	-0.00051572	-1.6745	-0.00096496	576.7837117018148	64.913	0.19642	64.658	64.504	64.7	-0.25563					6	4	2	0	0	0	0.03519	1	7367	7367		31.53	9.5699	1	373070	+		6462	28854	4041	4057	8052	8052					-0.018634898357504426
DESLAKPTI	9	Unmodified	_DESLAKPTI_					0	0	0		nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2799987792969	2	487.263665	972.512776	-0.43901	-0.00021391	1.1146	0.00054311	0.67561	0.0003292	487.2649874612844	50.408	0.53799	50.489	50.276	50.814	0.080994					23	15	3	0	0	0	0.023239	1	5234	5234		45.972	0	1	228150			6463	1053	4042	4058	8053	8053					0.025420439694244124
DESSKQEI	8	Unmodified	_DESSKQEI_					0	0	0			REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.26885986328125	2	468.219454	934.424355	-0.39814	-0.00018642	1.2464	0.00058359	0.84826	0.00039717	468.21986088465707	60.861	0.49112	60.648	60.421	60.912	-0.2134					18	12	2	0	0	0	0.027866	1	6956	6956		37.159	11.709	1	157360	+		6464	19675	4043	4059	8054	8054					-0.04547996341034377
DESVEAKR	8	Unmodified	_DESVEAKR_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.60772705078125	2	467.235439	932.456324	0.61918	0.0002893	2.2068	0.0010311	2.826	0.0013204	467.2363807677791	100.91	0.70183	100.78	100.57	101.27	-0.13188					25	17	2	0	0	0	0.027866	1	12548	12548		27.882	0	1	133960			6465	11013	4044	4060	8055	8055					-0.012605838672357095
DESYGQIFKPI	11	Unmodified	_DESYGQIFKPI_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2554626464844	3	432.887199	1295.63977	0.70821	0.00030657	-2.6938	-0.0011661	-1.9856	-0.00085952	432.8851272404557	103.21	1.3412	103.04	102.59	103.93	-0.17034					41	32	2	0	0	0	0.024727	1	12884	12884		17.833	0	1	63327			6466	9897	4045	4061	8056	8056					0.0037734512377483043
DETKNSVVK	9	Unmodified	_DETKNSVVK_					0	0	0			REV__ENSG00000081026|ENST00000307546|MAGI3	REV__ENSG00000081026|ENST00000307546|MAGI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.274169921875	2	510.272021	1018.52949	0.071912	3.6695E-05	3.3664	0.0017178	3.4383	0.0017545	510.2737196623369	90.544	2.1866	90.557	90.161	92.347	0.013443					125	52	4	0	0	0	0.10174	1	11467	11467		110.12	10.745	1	33874000	+		6467	20671	4046	4062	8057	8057					0.020965448553852184
DETLELRGL	9	Unmodified	_DETLELRGL_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.80078125	2	523.279846	1044.54514	-0.8963	-0.00046902	1.4263	0.00074637	0.53004	0.00027736	523.2812467390233	48.78	0.45306	48.78	48.516	48.969	0					16	12	2	0	0	0	0.023635	1	4995	4995		56.721	0	1	153780			6468	1331	4047	4063	8058	8058					0.024648313724583204
DETLLKKW	8	Unmodified	_DETLLKKW_					0	0	0		EXOC6|p.N425D|1|0.13|ENSG00000138190|chr10:92940787-92940787|A/G|missense_variant	EXOC6|p.N425D|1|0.13|ENSG00000138190|chr10:92940787-92940787|A/G|missense_variant	EXOC6|p.N425D|1|0.13|ENSG00000138190|chr10:92940787-92940787|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.768310546875	2	516.78985	1031.56515	-0.33361	-0.0001724	-0.36204	-0.0001871	-0.69564	-0.0003595	516.7884011650084	39.574	0.15875	39.351	39.263	39.422	-0.22311					5	3	2	0	0	0	0.027866	1	3343	3343		30.504	0	1	56134			6469	17629	4048	4064	8059	8059					0.05062627103052364
DETNVRIVG	9	Unmodified	_DETNVRIVG_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.32098388671875	2	501.764363	1001.51417	-0.61915	-0.00031067	-2.936	-0.0014732	-3.5552	-0.0017839	501.76254034341423	62.976	0.73362	62.976	62.531	63.265	0					34	18	3	0	0	0	0.024205	1	7389	7389		63.306	6.5852	1	490300	+		6470	20330	4049	4065	8060	8060					0.013476780582095671
DETPFKQI	8	Unmodified	_DETPFKQI_					0	0	0			REV__ENST00000485258.1_1_14:103840378-103840498:-|nuORF	REV__ENST00000485258.1_1_14:103840378-103840498:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.29278564453125	2	489.250557	976.486562	-0.38865	-0.00019015	3.8595	0.0018883	3.4709	0.0016981	489.2524092065901	67.184	0.86816	67.208	66.685	67.554	0.023903					24	20	2	0	0	0	0.027866	1	7895	7895		60.972	11.53	1	107470	+		6471	33558	4050	4066	8061	8061					-0.002622252020501037
DETTKLTQT	9	Unmodified	_DETTKLTQT_					0	0	0		nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7803344726562	2	518.761486	1035.50842	-0.75324	-0.00039075	2.6672	0.0013836	1.914	0.00099289	518.762569655368	44.21	0.26752	44.247	44.142	44.41	0.0369					10	7	2	0	0	0	0.024511	1	4159	4159		32.812	3.6629	1	118240			6472	4544	4051	4067	8062	8062					-0.007914652441513681
DETVTHFI	8	Unmodified	_DETVTHFI_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2555847167969	2	481.234907	960.455261	-0.36276	-0.00017457	0.68087	0.00032766	0.31811	0.00015308	481.2353839122637	89.835	0.34418	89.672	89.472	89.816	-0.1626					13	7	2	0	0	0	0.027866	1	10965	10965		19.36	0	1	69435			6473	7142	4052	4068	8063	8063					-0.02654798236142142
DEVAPEPLLPA	11	Unmodified	_DEVAPEPLLPA_					0	0	0		ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000472831.5_1_5:176884436-176895158:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8034057617188	2	575.803154	1149.59175	-0.218	-0.00012553	-0.32047	-0.00018453	-0.53848	-0.00031006	575.8028178611904	70.621	0.83017	70.621	70.355	71.185	0					49	19	3	0	0	0	0.81602	1	8532	8532		56.721	8.7615	1	1916500			6474	3326	4053	4069	8064	8064					0.02294271203709286
DEVFHSIQA	9	Unmodified	_DEVFHSIQA_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.292724609375	2	523.251089	1044.48762	0.24712	0.00012931	-1.1969	-0.00062629	-0.9498	-0.00049698	523.7529492776653	51.661	0.18125	51.542	51.394	51.575	-0.11876					6	4	2	0	0	0	0.024021	1	5315	5315		68.787	1.2932	1	37758			6475	3986	4054	4070	8065	8065					-0.03284010833135653
DEVGYSHPRY	10	Unmodified	_DEVGYSHPRY_					0	0	0		nc|ENSG00000101955|P78539-3|SRPX;ENSG00000101955|ENST00000378533|SRPX;nc|ENSG00000101955|P78539-4|SRPX	nc|ENSG00000101955|P78539-3|SRPX	nc|ENSG00000101955|P78539-3|SRPX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	612.7761840820312	2	611.778002	1221.54145	-0.29006	-0.00017745	-0.23567	-0.00014418	-0.52572	-0.00032163	611.7778883781315	49.251	0.93756	49.069	48.631	49.569	-0.18206					102	24	6	0	0	0	1.089	1	4920	4920		34.173	1.3601	1	3825000			6476	2364	4055	4071	8066	8066					-0.060458384014282274
DEVIEDTRY	9	Unmodified	_DEVIEDTRY_					0	0	0		nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-5|MYOF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.2677612304688	2	570.264393	1138.51423	0.12828	7.3152E-05	4.2652	0.0024323	4.3935	0.0025055	570.2669676045145	78.632	1.3174	78.476	77.914	79.231	-0.15592					96	30	5	0	0	0	0.51687	1	9368	9368		58.23	1.5089	1	825560			6477	5208	4056	4072	8067	8067					-0.04948366732469367
DEVKIKMV	8	Unmodified	_DEVKIKMV_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.8055419921875	2	481.272978	960.531403	0.13703	6.5949E-05	-0.8954	-0.00043093	-0.75837	-0.00036498	481.2723441325778	53.214	0.56836	53.214	53.086	53.655	0					21	15	2	0	0	0	0.027866	1	5801	5801		50.025	18.07	1	270630	+		6478	27649	4057	4073	8068	8068					0.049558823396409935
DEVKIKMV	8	Unmodified	_DEVKIKMV_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.272978	960.531403	-0.39543	-0.00019031	-0.32157	-0.00015477	-0.717	-0.00034507	481.27277036548594	53.064	0.46425	53.16	52.98	53.444	0.095669	-0.03453	0.00031743	NaN	47.916	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187200	+		6479	27649	4057	4073							0.049558823396409935
DEVKKVKAE	9	Unmodified	_DEVKKVKAE_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2899169921875	2	523.298039	1044.58152	-1.7492	-0.00091535	-3.4602	-0.0018107	-5.2094	-0.0027261	523.2950570466779	51.874	1.3508	51.605	51.203	52.553	-0.26904					80	35	4	0	0	0	0.27161	1	5334	5334		79.451	0	1	7671500			6480	10174	4058	4074	8069	8069					0.061017082691250835
DEVKLDKV	8	Unmodified	_DEVKLDKV_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7869873046875	2	473.266207	944.517862	0.67868	0.0003212	-0.15998	-7.5713E-05	0.5187	0.00024548	473.26594743314996	83.798	1.5598	83.629	83.328	84.888	-0.16915					60	36	3	0	0	0	0.027866	1	10117	10117		17.365	0	1	295780	+		6481	21708	4059	4075	8070	8070					0.04338347832049294
DEVLHTMPI	9	Oxidation (M)	_DEVLHTM(Oxidation (M))PI_		DEVLHTM(1)PI		DEVLHTM(77)PI	0	0	1		ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2706298828125	2	535.762975	1069.5114	-0.98292	-0.00052661	0.044172	2.3666E-05	-0.93875	-0.00050294	535.7627508354649	51.711	1.1995	51.564	51.01	52.209	-0.14735					73	33	3	0	0	0	0.023355	1	5577	5577		76.847	30.895	1	632190			6482	5513	4060	4076	8071	8071		235			-0.02057913391013244
DEVLHTMPI	9	Oxidation (M)	_DEVLHTM(Oxidation (M))PI_					0	0	1		ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.762975	1069.5114	0.025461	1.3641E-05	-0.0066476	-3.5615E-06	0.018813	1.0079E-05	535.7624997757529	51.629	1.2758	51.51	50.889	52.165	-0.11875	-0.062853	-2.5738E-05	NaN	76.847	69	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668180			6483	5513	4060	4076				235			-0.02057913391013244
DEVLHTMPI	9	Oxidation (M)	_DEVLHTM(Oxidation (M))PI_					0	0	1		ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.762975	1069.5114	-2.011	-0.0010774	1.2365	0.00066248	-0.77446	-0.00041493	535.7634710028819	51.859	1.3415	51.59	50.974	52.316	-0.26903	0.016753	0.0013063	NaN	76.847	63	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522570			6484	5513	4060	4076				235			-0.02057913391013244
DEVLHTMPI	9	Oxidation (M)	_DEVLHTM(Oxidation (M))PI_					0	0	1		ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.762975	1069.5114	0.036632	1.9626E-05	-0.69516	-0.00037244	-0.65853	-0.00035282	535.762395935421	51.761	1.3365	51.577	51.058	52.395	-0.18405	0.0037909	-0.0007635	NaN	76.847	54	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613700			6485	5513	4060	4076				235			-0.02057913391013244
DEVLRLILT	9	Unmodified	_DEVLRLILT_					0	0	0		ENSG00000129696|ENST00000431156|TTI2;ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7982788085938	2	536.324057	1070.63356	0.2261	0.00012126	-0.42017	-0.00022535	-0.19407	-0.00010408	536.3236983243243	88.78	0.50708	88.752	88.561	89.068	-0.027657					16	11	2	0	0	0	0.024511	1	11203	11203		25.574	0	1	90887			6486	4367	4061	4077	8072	8072					0.10106871682887686
DEVNYNIF	8	Unmodified	_DEVNYNIF_					0	0	0			REV__nc|ENSG00000145526|Q13634-2|CDH18	REV__nc|ENSG00000145526|Q13634-2|CDH18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7846374511719	2	507.232364	1012.45018	0.61584	0.00031237	4.0103	0.0020341	4.6261	0.0023465	507.23396329194463	72.503	0.5242	72.513	72.169	72.693	0.0097733					25	12	3	0	0	0	0.027866	1	8763	8763		47.916	1.9636	1	106300	+		6487	24413	4062	4078	8073	8073					-0.055551020987536504
DEVPLTSMA	9	Unmodified	_DEVPLTSMA_					0	0	0			REV__nc|ENSG00000263001|P78347-2|GTF2I	REV__nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.302978515625	2	481.7286	961.442648	-0.096219	-4.6351E-05	0.91126	0.00043898	0.81504	0.00039263	481.72878177101325	73.357	0.42982	73.167	73.007	73.436	-0.19027					15	10	2	0	0	0	0.024412	1	8599	8599		11.511	0	1	222200	+		6488	29127	4063	4079	8074	8074					-0.03961577690699869
DEVPVELY	8	Unmodified	_DEVPVELY_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-3|KMT2E;nc|ENSG00000005483|Q8IZD2-4|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.77630615234375	2	482.237116	962.459678	0.64123	0.00030922	-1.9807	-0.00095518	-1.3395	-0.00064595	482.2362920389288	49.392	0.51844	49.392	49.249	49.768	0					16	13	2	0	0	0	0.027866	1	5147	5147		33.516	6.8227	1	82054			6489	771	4064	4080	8075	8075					-0.023053338132399404
DEVQNRIKEI	10	Unmodified	_DEVQNRIKEI_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3364868164062	2	622.335684	1242.65681	-2.2817	-0.00142	3.7258	0.0023187	1.4441	0.00089872	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	1.0616	1	13512	13512		37.812	5.061	1	1465400			6490	9821	4065	4081	8076	8076					0.04519265729572908
DEVSKRRR	8	Unmodified	_DEVSKRRR_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3242797851562	2	523.296696	1044.57884	-0.87531	-0.00045805	1.3638	0.00071367	0.48848	0.00025562	523.7982531579135	79.326	0.24583	79.326	79.201	79.447	0					10	5	3	0	0	0	0.027866	1	9851	9851		24.203	0	1	84798	+		6491	20987	4066	4082	8077	8077					0.05833297654839953
DEVVLETEI	9	Unmodified	_DEVVLETEI_					0	0	0		nc|ENSG00000139977|Q147X3-2|NAA30;ENSG00000139977|ENST00000556492|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2967529296875	2	523.766237	1045.51792	-0.4654	-0.00024376	-3.9334	-0.0020602	-4.3988	-0.002304	524.2645394815426	51.584	0.16647	51.584	51.535	51.702	0					5	4	2	0	0	0	0.024436	1	5486	5486		30.504	5.0535	1	53014			6492	5382	4067	4083	8078	8078					-0.0030169695860422507
DEWHHYAL	8	Unmodified	_DEWHHYAL_					0	0	0		ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3495483398438	2	535.738148	1069.46174	-0.45941	-0.00024612	2.4133	0.0012929	1.9539	0.0010468	535.7391772316029	87.837	0.44115	87.658	87.405	87.847	-0.17874					17	10	2	0	0	0	0.027866	1	10660	10660		44.531	0	1	88201			6493	5310	4068	4084	8079	8079					-0.07020860284774244
DEWPFLWVFCP	11	Unmodified	_DEWPFLWVFCP_					0	0	0		ENST00000375389.7_1_9:96291879-96291945:+|nuORF	ENST00000375389.7_1_9:96291879-96291945:+|nuORF	ENST00000375389.7_1_9:96291879-96291945:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.21728515625	3	480.221525	1437.64274	1.0013	0.00048085	-2.3646	-0.0011355	-1.3633	-0.0006547	480.2202138005075	36.95	0.39567	36.741	36.565	36.961	-0.2092					20	9	3	0	0	0	0.024801	1	2940	2940		23.378	13.732	1	96940			6494	13159	4069	4085	8080	8080					-0.05857103023095078
DEWPFLWVFCP	11	Unmodified	_DEWPFLWVFCP_					0	0	0		ENST00000375389.7_1_9:96291879-96291945:+|nuORF	ENST00000375389.7_1_9:96291879-96291945:+|nuORF	ENST00000375389.7_1_9:96291879-96291945:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	480.221525	1437.64274	-0.66607	-0.00031986	-0.47047	-0.00022593	-1.1365	-0.00054579	480.22118910011227	37.028	0.31596	36.809	36.607	36.923	-0.2195	0.033909	0.0016955	NaN	29.551	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94296			6495	13159	4069	4085							-0.05857103023095078
DEWPGMRS	8	Unmodified	_DEWPGMRS_					0	0	0			REV__CON__Q28107	REV__CON__Q28107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.25152587890625	2	489.210909	976.407265	-0.54665	-0.00026743	0.96668	0.00047291	0.42003	0.00020548	489.21125134478945	73.309	0.4111	73.319	73.068	73.479	0.0096512					16	10	2	0	0	0	0.027866	1	8884	8884		20.947	0	1	118440	+	+	6496	19571	4070	4086	8081	8081					-0.0818819542782876
DEWQSLDQN	9	Unmodified	_DEWQSLDQN_					0	0	0		nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-2|BUB1	nc|ENSG00000169679|O43683-3|BUB1	nc|ENSG00000169679|O43683-3|BUB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8109741210938	2	567.738542	1133.46253	-0.25947	-0.00014731	-2.7456	-0.0015588	-3.0051	-0.0017061	567.7367781995349	70.34	1.4101	70.068	68.822	70.232	-0.27184					78	33	4	0	0	0	0.023454	1	8067	8067		62.107	0	1	547180			6497	7963	4071	4087	8082	8082					-0.0988611042635057
DEYEKKHEEYE	11	Unmodified	_DEYEKKHEEYE_					0	0	0			REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7922668457031	3	500.215933	1497.62597	0.31356	0.00015685	2.0178	0.0010094	2.3314	0.0011662	500.55082620103457	52.619	0.22618	52.711	52.638	52.864	0.091938					8	5	2	0	0	0	0.024869	1	5581	5581		3.4087	0	1	46670	+		6498	25840	4072	4088	8083	8083					-0.10293977165974866
DEYFTFIT	8	Unmodified	_DEYFTFIT_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.257080078125	2	518.237116	1034.45968	-0.51905	-0.00026899	-3.6292	-0.0018808	-4.1482	-0.0021498	518.2353138196294	81.738	0.6344	81.595	81.233	81.868	-0.14249					29	14	3	0	0	0	0.027866	1	9843	9843		24.203	0	1	195140			6499	7082	4073	4089	8084	8084					-0.05617333813233927
DEYFVNAL	8	Unmodified	_DEYFVNAL_					0	0	0			REV__ENSG00000144354|ENST00000306721|CDCA7	REV__ENSG00000144354|ENST00000306721|CDCA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.7337341308594	2	485.729458	969.444362	-0.13624	-6.6174E-05	3.7258	0.0018097	3.5895	0.0017435	485.7310940814935	72.788	0.68659	72.511	72.24	72.926	-0.2769					38	15	3	0	0	0	0.87148	1	8530	8530		53.351	10.877	1	649450	+		6500	24327	4074	4090	8085	8085					-0.04158200610413587
DEYGLTHY	8	Unmodified	_DEYGLTHY_					0	0	0			REV__nc|ENSG00000129221|Q9NZN9-2|AIPL1	REV__nc|ENSG00000129221|Q9NZN9-2|AIPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.73529052734375	2	499.216714	996.418876	-0.60181	-0.00030043	3.7105	0.0018523	3.1087	0.0015519	499.2184688021102	32.3	0.86654	32.142	31.861	32.728	-0.15772					53	20	5	0	0	0	0.027866	1	2265	2265		42.474	18.272	1	3055500	+		6501	23037	4075	4091	8086	8086					-0.07947675132857057
DEYKYNVL	8	Unmodified	_DEYKYNVL_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3255615234375	2	522.25584	1042.49713	-0.93054	-0.00048598	-2.2494	-0.0011748	-3.1799	-0.0016607	522.2543188071826	81.036	1.4515	81.06	80.735	82.187	0.023911					52	35	3	0	0	0	0.027866	1	10136	10136		30.504	0	1	491970	+		6502	36494	4076	4092	8087	8087					-0.022422425476179342
DFAASLPAFVT	11	Unmodified	_DFAASLPAFVT_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.737548828125	2	569.792589	1137.57063	0.28792	0.00016405	0.14522	8.2742E-05	0.43313	0.0002468	570.2927941206024	57.445	0.11106	57.242	57.172	57.283	-0.20209					4	2	2	0	0	0	0.024808	1	6273	6273		18.262	2.6203	1	61965	+		6503	23612	4077	4093	8088	8088					0.00734305894843601
DFAPGLHQSL	10	Unmodified	_DFAPGLHQSL_					0	0	0			REV__ENST00000567833.1_1_16:31146370-31146960:-|nuORF	REV__ENST00000567833.1_1_16:31146370-31146960:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7760620117188	2	542.774731	1083.53491	-0.32604	-0.00017697	3.2926	0.0017871	2.9665	0.0016102	542.776414331956	67.603	1.315	67.603	67.285	68.6	0					103	33	6	0	0	0	0.54901	1	8112	8112		82.75	9.8712	1	15261000	+		6504	35329	4078	4094	8089	8089					-0.0035173156215932977
DFAPGLHQSL	10	Unmodified	_DFAPGLHQSL_					0	0	0			REV__ENST00000567833.1_1_16:31146370-31146960:-|nuORF	REV__ENST00000567833.1_1_16:31146370-31146960:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.7759399414062	2	542.774731	1083.53491	-0.48424	-0.00026284	3.5719	0.0019387	3.0877	0.0016759	542.776579577496	67.98	1.5263	67.691	67.268	68.794	-0.28834					105	38	4	0	0	0	0.40114	1	8125	8125		98.582	13.666	1	14879000	+		6505	35329	4078	4094	8090	8090					-0.0035173156215932977
DFAVHCYRQGA	11	Unmodified	_DFAVHCYRQGA_					0	0	0		ENSG00000167094|ENST00000373289|TTC16;ENST00000488285.1_1_9:130482605-130486777:+|nuORF;nc|ENSG00000167094|Q8NEE8-2|TTC16	ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.7847900390625	2	633.787847	1265.56114	-0.7106	-0.00045037	-3.9191	-0.0024839	-4.6297	-0.0029342	633.785324005903	42.995	0.68431	42.757	42.452	43.136	-0.23737					46	17	4	0	0	0	0.97516	1	3894	3894		32.812	0	1	2376200			6506	7646	4079	4095	8091	8091					-0.0610178566232662
DFCTIIGLAH	10	Carbamidomethyl (C)	_DFC(Carbamidomethyl (C))TIIGLAH_	DFC(1)TIIGLAH		DFC(71)TIIGLAH		0	1	0			REV__ENSG00000182162|ENST00000381297|P2RY8	REV__ENSG00000182162|ENST00000381297|P2RY8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.7831420898438	2	573.784241	1145.55393	0.92398	0.00053017	1.2037	0.00069067	2.1277	0.0012208	573.7848207369756	70.816	0.98943	70.524	70.2	71.189	-0.29291					59	25	3	0	0	0	0.65054	1	8496	8496		71.296	9.1883	1	2618500	+		6507	27452	4080	4096	8092	8092	362				-0.013025182627643517
DFCTIIGLAH	10	Unmodified	_DFCTIIGLAH_					0	0	0			REV__ENSG00000182162|ENST00000381297|P2RY8	REV__ENSG00000182162|ENST00000381297|P2RY8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2756958007812	2	545.273509	1088.53247	-0.96677	-0.00052716	2.5394	0.0013847	1.5727	0.00085753	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.91051	1	9576	9576		53.351	5.4358	1	52905000	+		6508	27452	4080	4097	8093	8093					-0.008259032914565978
DFCYSSIIAP	10	Unmodified	_DFCYSSIIAP_					0	0	0		ENSG00000205029|ENST00000378396|OR5D16;ENSG00000186119|ENST00000333976|OR5D18	ENSG00000205029|ENST00000378396|OR5D16;ENSG00000186119|ENST00000333976|OR5D18	ENSG00000186119|ENST00000333976|OR5D18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2593383789062	2	558.257525	1114.5005	0.55882	0.00031197	2.3575	0.0013161	2.9163	0.0016281	558.2590178270653	79.585	1.5747	79.339	78.947	80.522	-0.2465					97	37	6	0	0	0	0.75995	1	9505	9505		63.306	4.5243	1	7994800			6509	10400;9517	4081	4098	8094	8094					-0.05217315765253261
DFDMQDSMV	9	Unmodified	_DFDMQDSMV_					0	0	0		sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2691650390625	2	544.207175	1086.3998	-0.2116	-0.00011515	-1.3194	-0.00071801	-1.531	-0.00083317	544.2057965272352	70.271	0.28458	70.02	69.858	70.143	-0.25063					13	6	3	0	0	0	0.024523	1	8176	8176		29.15	0	1	65282			6510	37932	4082	4099	8095	8095					-0.1399471581044054
DFDNRYKN	8	Unmodified	_DFDNRYKN_					0	0	0			REV__ENSG00000221923|ENST00000422689|ZNF880	REV__ENSG00000221923|ENST00000422689|ZNF880	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2471923828125	2	536.246338	1070.47812	-0.020473	-1.0978E-05	0.87901	0.00047136	0.85853	0.00046039	536.2466895998014	70.114	2.1538	70.114	69.75	71.904	0					81	57	2	0	0	0	1.0106	1	8477	8477		35.618	2.1027	1	5560700	+		6511	28838	4083	4100	8096	8096					-0.054297791186627364
DFDVVTLLL	9	Unmodified	_DFDVVTLLL_					0	0	0			REV__ENSG00000103528|ENST00000355377|SYT17	REV__ENSG00000103528|ENST00000355377|SYT17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7925415039062	2	517.792058	1033.56956	0.18535	9.5972E-05	2.86	0.0014809	3.0453	0.0015769	517.7933340082673	100.76	1.539	100.58	100.24	101.78	-0.17178					60	37	2	0	0	0	0.29104	1	12493	12493		76.847	2.8719	1	301950	+		6512	21392	4084	4101	8097	8097					0.054120915259545654
DFESIRLAHD	10	Unmodified	_DFESIRLAHD_					0	0	0		ENST00000561691.5_1_15:43691337-43697409:+|nuORF;ENST00000563963.1_1_15:43687726-43694213:+|nuORF;ENSG00000137822|ENST00000564079|TUBGCP4;nc|ENSG00000137822|Q9UGJ1|TUBGCP4	ENST00000561691.5_1_15:43691337-43697409:+|nuORF	ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.5545654296875	3	401.531527	1201.57275	0.16363	6.5704E-05	-1.9667	-0.00078968	-1.803	-0.00072398	401.53054237013816	26.996	0.53208	26.983	26.745	27.277	-0.012983					23	13	3	0	0	0	0.03519	1	1391	1391		49.536	25.304	1	157550			6513	5163	4085	4102	8098	8098					-0.019972653673676177
DFEYSTQSY	9	Unmodified	_DFEYSTQSY_					0	0	0		ELP3-MYO5C|1|fusion;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ENST00000521938.5_1_8:27950677-27967964:+|nuORF;nc|ENSG00000134014|Q9H9T3-5|ELP3;ENST00000522063.1_1_8:27957393-27970048:+|nuORF	ELP3-MYO5C|1|fusion	ELP3-MYO5C|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2291870117188	2	570.230019	1138.44548	-0.16719	-9.5336E-05	-0.26674	-0.0001521	-0.43393	-0.00024744	570.2297297038396	63.116	1.0947	62.932	62.671	63.765	-0.18386					63	27	4	0	0	0	0.20967	2	7128	7115;7128		87.754	18.127	1	3806800			6514	703	4086	4103	8099;8100	8100					-0.11820031032175393
DFEYSTQSY	9	Unmodified	_DFEYSTQSY_					0	0	0		ELP3-MYO5C|1|fusion;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ENST00000521938.5_1_8:27950677-27967964:+|nuORF;nc|ENSG00000134014|Q9H9T3-5|ELP3;ENST00000522063.1_1_8:27957393-27970048:+|nuORF	ELP3-MYO5C|1|fusion	ELP3-MYO5C|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.228515625	2	570.230019	1138.44548	0.22757	0.00012977	-0.46407	-0.00026463	-0.2365	-0.00013486	570.2296468366247	63.223	1.0863	62.964	62.706	63.792	-0.25824					63	27	4	0	0	0	0.32811	1	7113	7113		71.877	17.101	1	3686100			6515	703	4086	4103	8101	8101					-0.11820031032175393
DFFELNTIT	9	Unmodified	_DFFELNTIT_					0	0	0			REV__ENST00000444553.5_1_13:19625452-19630695:-|nuORF	REV__ENST00000444553.5_1_13:19625452-19630695:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3027954101562	2	550.268947	1098.52334	-0.46969	-0.00025845	1.8794	0.0010342	1.4097	0.00077572	550.2705976787622	78.771	1.0007	78.771	78.323	79.323	0					42	23	3	0	0	0	0.024209	1	9788	9788		56.721	10.749	1	134930	+		6516	32596	4087	4104	8102	8102					-0.021979733761327225
DFFFPIFDD	9	Unmodified	_DFFFPIFDD_					0	0	0		ENST00000582730.6_1_17:56081122-56081260:-|nuORF	ENST00000582730.6_1_17:56081122-56081260:-|nuORF	ENST00000582730.6_1_17:56081122-56081260:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.2767944335938	2	581.758215	1161.50188	-0.27753	-0.00016145	2.1532	0.0012526	1.8757	0.0010912	582.2621292922307	86.387	0.89624	86.411	86.116	87.012	0.023666					23	20	2	0	0	0	0.024523	1	10787	10787		29.15	0	1	71192			6517	17184	4088	4105	8103	8103					-0.07241358404849052
DFFLSLQV	8	Unmodified	_DFFLSLQV_					0	0	0			REV__ENSG00000157353|ENST00000288078|FCSK	REV__ENSG00000157353|ENST00000288078|FCSK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.77899169921875	2	484.758018	967.501483	-0.86321	-0.00041845	1.0977	0.00053212	0.2345	0.00011367	484.75821241882505	62.068	0.50306	61.89	61.576	62.079	-0.17781					18	12	2	0	0	0	0.027866	1	6978	6978		82.305	19.327	1	96458	+		6518	25126	4089	4106	8104	8104					0.016432666659511597
DFFMVSILF	9	Unmodified	_DFFMVSILF_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;DHCR24-PCNXL2|1|fusion;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENST00000484041.5_1_1:233225805-233270923:-|nuORF;ENST00000486012.5_1_1:233231420-233297095:-|nuORF;ENST00000520463.1_1_1:233261754-233296164:-|nuORF	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MSMS	OPSCC_39_ClassI_Rep-1	1	559.7822875976562	2	559.783179	1117.5518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.74	1	111.74	111.24	112.24	0								0	0	0	0.73432	1	14105	14105		12.959	0	1				6519	4927	4090	4107	8105	8105					-0.002269470005558105
DFFTLQDTL	9	Unmodified	_DFFTLQDTL_					0	0	0		ENSG00000215018|ENST00000399429|COL28A1	ENSG00000215018|ENST00000399429|COL28A1	ENSG00000215018|ENST00000399429|COL28A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3025512695312	2	550.268947	1098.52334	-0.56028	-0.0003083	2.3561	0.0012965	1.7958	0.00098816	550.2706032841971	78.927	0.95764	78.735	78.298	79.255	-0.1921					42	22	3	0	0	0	0.024025	1	9791	9791		82.241	5.4664	1	175490			6520	10578	4091	4108	8106	8106					-0.021979733761327225
DFFWPGWAN	9	Unmodified	_DFFWPGWAN_					0	0	0		ENST00000451734.1_2_2:122494382-122494481:-|nuORF	ENST00000451734.1_2_2:122494382-122494481:-|nuORF	ENST00000451734.1_2_2:122494382-122494481:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3138427734375	2	570.250892	1138.48723	0.90486	0.00051599	3.0749	0.0017535	3.9798	0.0022695	570.2524902588569	96.275	0.49742	96.152	95.898	96.396	-0.12305					20	11	2	0	0	0	0.024506	1	11892	11892		23.042	12.177	1	76439			6521	14527	4092	4109	8107	8107					-0.07647385762311387
DFGKVKSSL	9	Unmodified	_DFGKVKSSL_					0	0	0		ENST00000336314.8_2_5:154193613-154193697:+|nuORF	ENST00000336314.8_2_5:154193613-154193697:+|nuORF	ENST00000336314.8_2_5:154193613-154193697:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7738952636719	2	490.7742	979.533846	-0.61105	-0.00029989	-0.80503	-0.00039509	-1.4161	-0.00069498	490.77359688981244	28.091	0.52688	27.922	27.768	28.294	-0.16897					30	12	4	0	0	0	0.16468	1	1609	1609		96.19	11.275	1	817420			6522	12408	4093	4110	8108	8108					0.04326054068940266
DFGLETMGF	9	Unmodified	_DFGLETMGF_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|322|3|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|322|3|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|322|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7825012207031	2	508.723318	1015.43208	-0.49195	-0.00025027	4.2043	0.0021388	3.7124	0.0018886	508.72525625116674	41.692	0.68626	41.464	41.121	41.807	-0.2278					37	17	3	0	0	0	0.024506	1	3733	3733		23.042	9.5884	1	671430			6523	17844	4094	4111	8109	8109					-0.07501560345110647
DFHRFAKM	8	Unmodified	_DFHRFAKM_					0	0	0		LPCAT1|p.E481K|1|0.2|ENSG00000153395|chr5:1463815-1463815|C/T|missense_variant	LPCAT1|p.E481K|1|0.2|ENSG00000153395|chr5:1463815-1463815|C/T|missense_variant	LPCAT1|p.E481K|1|0.2|ENSG00000153395|chr5:1463815-1463815|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2960815429688	2	526.260736	1050.50692	0.15845	8.3387E-05	-4.0395	-0.0021258	-3.881	-0.0020424	526.258477457969	81.166	0.49149	80.973	80.68	81.171	-0.19333					19	11	2	0	0	0	0.027866	1	9762	9762		25.45	0	1	244700			6524	17920	4095	4112	8110	8110					-0.016313330232378576
DFHSNIKTV	9	Unmodified	_DFHSNIKTV_					0	0	0		ENSG00000144227|ENST00000272641|NXPH2;ENSG00000122584|ENST00000405863|NXPH1	ENSG00000144227|ENST00000272641|NXPH2	ENSG00000144227|ENST00000272641|NXPH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7684326171875	2	530.774731	1059.53491	-0.68121	-0.00036157	2.0065	0.001065	1.3252	0.00070341	530.775579210363	40.938	0.98582	40.71	40.329	41.315	-0.2278					39	25	2	0	0	0	0.024436	1	3515	3515		38.806	17.859	1	406110			6525	3934	4096	4113	8111	8111					0.007522684378500344
DFIFTSVY	8	Unmodified	_DFIFTSVY_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;SENP7|p.K545Nfs*11|1|0.2|ENSG00000138468|chr3:101351640-101351640|T/-|frameshift_variant	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.32318115234375	2	496.242201	990.469849	-0.39109	-0.00019408	-1.1354	-0.00056342	-1.5265	-0.00075749	496.2421774802285	64.678	0.41009	64.678	64.499	64.909	0					21	10	3	0	0	0	0.027866	1	7598	7598		13.775	0	1	159390			6526	5248	4097	4114	8112	8112					-0.025767260880115828
DFIGPYSM	8	Unmodified	_DFIGPYSM_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2379455566406	2	465.207304	928.400055	-0.48365	-0.000225	0.49614	0.00023081	0.012489	5.8099E-06	465.20711363883856	30.063	0.32463	30.072	29.922	30.247	0.0086708					12	7	2	0	0	0	0.027866	1	1909	1909		19.36	0	1	98528			6527	4209	4098	4115	8113	8113					-0.06700928028260478
DFIKEVLVE	9	Unmodified	_DFIKEVLVE_					0	0	0			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3169555664062	2	546.30279	1090.59103	-0.58895	-0.00032175	-2.0368	-0.0011127	-2.6258	-0.0014345	546.300783582126	90.192	1.1113	90.175	89.959	91.07	-0.016716					46	26	3	0	0	0	0.024374	1	11449	11449		40.778	1.5253	1	730640	+		6528	27834	4099	4116	8114	8114					0.04935476554669549
DFIPLLQDV	9	Unmodified	_DFIPLLQDV_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-3|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2882690429688	2	530.289682	1058.56481	-0.82167	-0.00043573	-1.5479	-0.00082085	-2.3696	-0.0012566	530.2886685901052	45.63	0.77491	45.63	45.246	46.021	0					59	22	4	0	0	0	0.48817	1	4448	4448		60.118	6.7668	1	8452700			6529	1514	4100	4117	8115	8115					0.03787207383174973
DFKDVLIPG	9	Unmodified	_DFKDVLIPG_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2763977050781	2	502.276575	1002.5386	-0.80193	-0.00040279	0.5928	0.00029775	-0.20913	-0.00010504	502.2764733449899	64.991	1.1991	64.736	64.191	65.39	-0.25563					80	29	4	0	0	0	0.80658	1	7403	7403		38.806	1.647	1	1826700			6530	971	4101	4118	8116	8116					0.037429382117238674
DFKEDVIET	9	Unmodified	_DFKEDVIET_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.310546875	2	548.263862	1094.51317	-0.98693	-0.0005411	-2.9945	-0.0016418	-3.9814	-0.0021829	548.2622856582743	63.081	0.24715	62.842	62.778	63.025	-0.23926					7	5	2	0	0	0	0.024292	1	7339	7339		49.442	23.867	1	104630			6531	1711	4102	4119	8117	8117					-0.030305811013704442
DFKFTSIY	8	Unmodified	_DFKFTSIY_					0	0	0			REV__ENSG00000274070|ENST00000616305|CASTOR2	REV__ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7533264160156	2	510.755475	1019.4964	0.0015907	8.1248E-07	-4.0765	-0.0020821	-4.0749	-0.0020813	510.7532212924537	45.736	0.82555	45.639	45.326	46.152	-0.096653					61	22	4	0	0	0	0.42327	1	4367	4367		94.006	25.22	1	4163300	+		6532	29180	4103	4120	8118	8118					-0.012570371966717175
DFKFTSIY	8	Unmodified	_DFKFTSIY_					0	0	0			REV__ENSG00000274070|ENST00000616305|CASTOR2	REV__ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.75335693359375	2	510.755475	1019.4964	-0.35905	-0.00018339	-3.7079	-0.0018938	-4.067	-0.0020772	510.7533838353162	45.912	0.62827	45.651	45.416	46.044	-0.26118					49	16	4	0	0	0	0.53523	1	4389	4389		82.305	10.927	1	4145200	+		6533	29180	4103	4120	8119	8119					-0.012570371966717175
DFKIKTVEL	9	Unmodified	_DFKIKTVEL_					0	0	0		ENSG00000206418|ENST00000649141|RAB12;nc|ENSG00000206418|Q6IQ22|RAB12;ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10	ENSG00000206418|ENST00000649141|RAB12;ENSG00000084733|ENST00000264710|RAB10	ENSG00000206418|ENST00000649141|RAB12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2611083984375	2	546.818607	1091.62266	0.963	0.00052658	-1.2108	-0.00066208	-0.24779	-0.0001355	546.8178742633479	59.824	1.2572	59.627	59.214	60.472	-0.19742					60	31	4	0	0	0	0.022704	1	6635	6635		101.25	16.092	1	2602900			6534	10469;1778	4104	4121	8120	8120					0.08051469308611559
DFKIKTVEL	9	Unmodified	_DFKIKTVEL_					0	0	0		ENSG00000206418|ENST00000649141|RAB12;nc|ENSG00000206418|Q6IQ22|RAB12;ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10	ENSG00000206418|ENST00000649141|RAB12;ENSG00000084733|ENST00000264710|RAB10	ENSG00000206418|ENST00000649141|RAB12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2611083984375	2	546.818607	1091.62266	0.43103	0.00023569	-0.70288	-0.00038435	-0.27185	-0.00014865	546.8181183924047	59.714	1.244	59.538	59.078	60.322	-0.1761					64	31	4	0	0	0	0.023291	1	6629	6629		90.601	15.558	1	2684000			6535	10469;1778	4104	4121	8121	8121					0.08051469308611559
DFKIKTVEL	9	Unmodified	_DFKIKTVEL_					0	0	0		ENSG00000206418|ENST00000649141|RAB12;nc|ENSG00000206418|Q6IQ22|RAB12;ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10	ENSG00000206418|ENST00000649141|RAB12;ENSG00000084733|ENST00000264710|RAB10	ENSG00000206418|ENST00000649141|RAB12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.259765625	2	546.818607	1091.62266	-0.3955	-0.00021627	-0.018622	-1.0183E-05	-0.41412	-0.00022645	546.8184859933216	59.876	1.0468	59.627	59.17	60.217	-0.24842					57	26	4	0	0	0	0.022704	1	6615	6615		80.455	9.6384	1	2315900			6536	10469;1778	4104	4121	8122	8122					0.08051469308611559
DFKIRTIEL	9	Unmodified	_DFKIRTIEL_					0	0	0		ENST00000590899.5_1_19:16222711-16232755:+|nuORF;ENST00000342609.6_1_2:191857981-191858245:-|nuORF;ENST00000589697.1_1_19:16222732-16236504:+|nuORF;ENST00000587156.5_1_19:16222711-16238468:+|nuORF;nc|ENSG00000167461|P61006-2|RAB8A;ENSG00000167461|ENST00000300935|RAB8A;ENSG00000166128|ENST00000321437|RAB8B;nc|ENSG00000138069|P62820-3|RAB1A;ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A	ENST00000590899.5_1_19:16222711-16232755:+|nuORF;nc|ENSG00000138069|P62820-3|RAB1A	ENST00000590899.5_1_19:16222711-16232755:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8292846679688	2	567.829506	1133.64446	-0.4122	-0.00023406	0.25273	0.00014351	-0.15948	-9.0556E-05	567.8295695138067	65.188	0.81934	64.954	64.687	65.507	-0.2345					58	19	4	0	0	0	0.32064	1	7427	7427		72.879	3.2516	1	2727500			6537	17342;5198	4105	4122	8123	8123					0.08298274057187882
DFKIRTIEL	9	Unmodified	_DFKIRTIEL_					0	0	0		ENST00000590899.5_1_19:16222711-16232755:+|nuORF;ENST00000342609.6_1_2:191857981-191858245:-|nuORF;ENST00000589697.1_1_19:16222732-16236504:+|nuORF;ENST00000587156.5_1_19:16222711-16238468:+|nuORF;nc|ENSG00000167461|P61006-2|RAB8A;ENSG00000167461|ENST00000300935|RAB8A;ENSG00000166128|ENST00000321437|RAB8B;nc|ENSG00000138069|P62820-3|RAB1A;ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A	ENST00000590899.5_1_19:16222711-16232755:+|nuORF;nc|ENSG00000138069|P62820-3|RAB1A	ENST00000590899.5_1_19:16222711-16232755:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.8291625976562	2	567.829506	1133.64446	-0.51182	-0.00029063	0.21173	0.00012023	-0.30009	-0.0001704	567.8296136570165	65.194	0.93725	64.94	64.663	65.6	-0.25372					60	22	4	0	0	0	0.086035	3	7429	7416;7429;7441		115.49	32.744	1	2875900			6538	17342;5198	4105	4122	8124;8125;8126	8125					0.08298274057187882
DFKKKEEL	8	Unmodified	_DFKKKEEL_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.787109375	2	518.787307	1035.56006	-0.57384	-0.0002977	-0.027423	-1.4227E-05	-0.60126	-0.00031193	518.7871497349388	24.914	0.81672	24.687	24.494	25.311	-0.22683					48	18	5	0	0	0	0.30053	1	1133	1133		111.65	17.642	1	2032300			6539	5919	4106	4123	8127	8127					0.04370323240414109
DFKKKEEL	8	Unmodified	_DFKKKEEL_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.786865234375	2	518.787307	1035.56006	1.8311	0.00094993	-2.5436	-0.0013196	-0.71259	-0.00036968	518.7858468913955	24.836	0.8171	24.665	24.383	25.2	-0.17163					50	18	4	0	0	0	0.5947	2	1085	1085;1107		76.774	5.4784	1	1890900			6540	5919	4106	4123	8128;8129	8128					0.04370323240414109
DFKLSTAIKT	10	Unmodified	_DFKLSTAIKT_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.7780151367188	2	562.321514	1122.62847	-0.82926	-0.00046631	-0.9516	-0.0005351	-1.7809	-0.0010014	562.8213459053712	84.09	0.94046	84.09	83.605	84.546	0					35	21	3	0	0	0	0.03519	1	10482	10482		31.634	15.992	1	80220			6541	6282	4107	4124	8130	8130					0.07206567820276177
DFKMAQALEEL	11	Unmodified	_DFKMAQALEEL_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	647.8186645507812	2	647.821021	1293.62749	-0.11852	-7.6782E-05	-2.5412	-0.0016462	-2.6597	-0.001723	647.8193193050613	82.716	0.81261	82.742	82.445	83.257	0.026558					51	18	4	0	0	0	0.73278	1	10274	10274		61.765	8.4131	1	695330			6542	8653	4108	4125	8131	8131					-0.0075801461091487
DFKRILID	8	Unmodified	_DFKRILID_					0	0	0			REV__ENST00000512466.1_1_5:311346-314627:+|nuORF	REV__ENST00000512466.1_1_5:311346-314627:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.32330322265625	2	510.297842	1018.58113	0.36738	0.00018747	-4.0919	-0.0020881	-3.7245	-0.0019006	510.2961410230002	78.671	0.61699	78.478	78.016	78.633	-0.1921					18	14	2	0	0	0	0.027866	1	9701	9701		38.806	0	1	72700	+		6543	29021	4109	4126	8132	8132					0.07258333339962064
DFKVVFTR	8	Unmodified	_DFKVVFTR_					0	0	0		ENSG00000110881|ENST00000447966|ASIC1;nc|ENSG00000110881|P78348-1|ASIC1	ENSG00000110881|ENST00000447966|ASIC1	ENSG00000110881|ENST00000447966|ASIC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3125915527344	2	506.284734	1010.55492	0.49476	0.00025049	-4.1895	-0.0021211	-3.6948	-0.0018706	506.2825161707778	20.788	0.58953	20.592	20.385	20.975	-0.19577					14	11	2	0	0	0	0.027866	1	624	624		20.947	8.7401	1	42644			6544	3071	4110	4127	8133	8133					0.05006064168469493
DFLISFLWD	9	Unmodified	_DFLISFLWD_					0	0	0		GDF6|p.V11D|1|0.22|ENSG00000156466|chr8:96160661-96160661|A/T|missense_variant	GDF6|p.V11D|1|0.22|ENSG00000156466|chr8:96160661-96160661|A/T|missense_variant	GDF6|p.V11D|1|0.22|ENSG00000156466|chr8:96160661-96160661|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.3060302734375	2	578.289682	1154.56481	-0.72783	-0.00042089	0.30443	0.00017605	-0.42339	-0.00024484	578.2894051660039	76.192	0.19254	75.963	75.888	76.081	-0.22843					9	4	3	0	0	0	0.024506	1	9352	9352		30.504	0	1	125450			6545	17674	4111	4128	8134	8134					-0.006287926168170088
DFLLKPEL	8	Unmodified	_DFLLKPEL_					0	0	0		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.780029296875	2	487.781493	973.548434	-0.50377	-0.00024573	-0.11354	-5.5384E-05	-0.61731	-0.00030111	487.7812702047306	75.716	2.3612	75.444	74.441	76.802	-0.27266					129	57	4	0	0	0	0.25561	1	8948	8948		131.03	2.1703	1	3428300			6546	10149	4112	4129	8135	8135					0.06060126217084871
DFLLKPEL	8	Unmodified	_DFLLKPEL_					0	0	0		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENST00000593008.1_1_19:14523585-14524032:-|nuORF;ENST00000586558.5_1_19:14523585-14524032:-|nuORF;ENST00000590260.5_1_19:14522263-14530155:-|nuORF;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.78021240234375	2	487.781493	973.548434	0.4035	0.00019682	-1.0899	-0.00053166	-0.68645	-0.00033484	487.78082070314474	75.545	2.3308	75.37	74.48	76.811	-0.17548					127	56	4	0	0	0	0.27973	1	8932	8932		120.62	23.148	1	3261400			6547	10149	4112	4129	8136	8136					0.06060126217084871
DFLNRQLGE	9	Unmodified	_DFLNRQLGE_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.299072265625	2	546.277638	1090.54072	-0.56321	-0.00030767	3.8924	0.0021263	3.3292	0.0018187	546.2798508591403	63.503	0.50436	63.252	62.976	63.48	-0.25141					21	13	3	0	0	0	0.024292	1	7428	7428		40.778	2.9666	1	184210			6548	10172	4113	4130	8137	8137					-0.0009263305048534676
DFLPVMKLFDL	11	Unmodified	_DFLPVMKLFDL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7457275390625	3	446.577308	1336.7101	-0.25746	-0.00011497	3.3404	0.0014917	3.0829	0.0013768	446.5785327398533	24.824	0.21425	24.609	24.463	24.677	-0.2151					7	4	2	0	0	0	0.024727	1	1108	1108		17.833	2.4957	1	31102			6549	3192	4114	4131	8138	8138					0.05520927187876623
DFLRGLEASW	10	Unmodified	_DFLRGLEASW_					0	0	0		nc|ENSG00000159588|Q96LX7-2|CCDC17;nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17	nc|ENSG00000159588|Q96LX7-2|CCDC17	nc|ENSG00000159588|Q96LX7-2|CCDC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.3599853515625	2	597.301113	1192.58767	-0.3906	-0.0002333	0.81949	0.00048948	0.42889	0.00025618	597.301736256564	58.787	0.4452	58.606	58.386	58.831	-0.18134					20	9	3	0	0	0	0.03519	1	6498	6498		44.117	20.739	1	254680			6550	6754	4115	4132	8139	8139					-0.00091773499343617
DFLTTIMKN	9	Oxidation (M)	_DFLTTIM(Oxidation (M))KN_		DFLTTIM(1)KN		DFLTTIM(53)KN	0	0	1			REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	549.778564453125	2	549.778625	1097.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.21	1	102.04	101.54	102.54	-0.17178								0	0	0	0.49654	1	12682	12682		53.351	9.2347	1		+		6551	24821	4116	4133	8140	8140		734			-0.002173403568804133
DFLVIRKNK	9	Unmodified	_DFLVIRKNK_					0	0	0			REV__ENSG00000084073|ENST00000372759|ZMPSTE24	REV__ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.829345703125	2	566.84549	1131.67643	-0.99557	-0.00056434	0.61219	0.00034702	-0.38338	-0.00021732	566.8457799959644	65.074	0.32529	64.871	64.697	65.023	-0.20254					11	7	2	0	0	0	0.024447	1	7429	7429		40.778	10.46	1	110380	+		6552	20727	4117	4134	8141	8141					0.11585686530997918
DFLVYLCVQ	9	Unmodified	_DFLVYLCVQ_					0	0	0		ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2804565429688	2	550.27826	1098.54197	-0.17265	-9.5003E-05	3.2042	0.0017632	3.0315	0.0016682	550.2798812249969	72.567	0.97575	72.567	72.17	73.146	0					60	23	3	0	0	0	0.25032	2	8856	8842;8856		82.305	6.4811	1	2289300			6553	12991	4118	4135	8142;8143	8143					-0.003361350059549295
DFLVYLCVQ	9	Unmodified	_DFLVYLCVQ_					0	0	0		ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.280517578125	2	550.27826	1098.54197	0.033356	1.8355E-05	2.7671	0.0015226	2.8004	0.001541	550.2796722193891	72.943	0.88648	72.662	72.344	73.231	-0.28124					36	21	2	0	0	0	0.29104	1	8861	8861		76.847	1.8033	1	2081400			6554	12991	4118	4135	8144	8144					-0.003361350059549295
DFLVYLCVQ	9	Unmodified	_DFLVYLCVQ_					0	0	0		ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2801513671875	2	550.27826	1098.54197	0.040505	2.2289E-05	2.9375	0.0016164	2.978	0.0016387	550.2797392130135	72.594	0.8139	72.604	72.331	73.145	0.0097733					50	19	3	0	0	0	0.22754	1	8778	8778		85.359	2.609	1	2190400			6555	12991	4118	4135	8145	8145					-0.003361350059549295
DFLVYLCVQ	9	Unmodified	_DFLVYLCVQ_					0	0	0		ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.27826	1098.54197	-0.26823	-0.0001476	2.489	0.0013697	2.2208	0.0012221	550.2793761812931	72.804	0.77089	72.527	72.028	72.799	-0.2769	-0.03522	-0.00036484	NaN	85.359	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275550			6556	12991	4118	4135							-0.003361350059549295
DFLVYLCVQ	9	Unmodified	_DFLVYLCVQ_					0	0	0		ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.27826	1098.54197	-0.081276	-4.4724E-05	2.2817	0.0012556	2.2004	0.0012108	550.2793190877794	72.84	0.84227	72.575	72.256	73.099	-0.26479	0.013455	-0.00059302	NaN	85.359	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438510			6557	12991	4118	4135							-0.003361350059549295
DFLVYLCVQ	9	Unmodified	_DFLVYLCVQ_					0	0	0		ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	ENST00000371361.3_1_10:96093866-96093926:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.27826	1098.54197	-0.56093	-0.00030867	2.9474	0.0016219	2.3865	0.0013132	550.2794377299017	72.634	0.63198	72.436	72.163	72.795	-0.19811	-0.12618	0.00013963	NaN	85.359	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465200			6558	12991	4118	4135							-0.003361350059549295
DFMNGFWSL	9	Unmodified	_DFMNGFWSL_					0	0	0			REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3	REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.3428344726562	2	558.744585	1115.47462	0.19442	0.00010863	-3.0309	-0.0016935	-2.8365	-0.0015849	558.7426965414187	67.427	0.48149	67.45	67.23	67.712	0.023911					15	11	2	0	0	0	0.024319	1	7944	7944		47.657	0	1	86929	+		6559	28311	4119	4136	8146	8146					-0.07850165216882488
DFMRFIVR	8	Unmodified	_DFMRFIVR_					0	0	0			REV__ENSG00000136937|ENST00000375147|NCBP1	REV__ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2950439453125	2	542.292037	1082.56952	3.2511	0.0017631	3.248	0.0017614	6.4991	0.0035244	542.2936863791565	18.412	1.8912	18.475	18.222	20.113	0.063307					66	38	4	0	0	0	1.0572	1	232	232		28.254	2.8041	1	653300	+		6560	23710	4120	4137	8147	8147					0.03153813044968956
DFPFPLGWL	9	Unmodified	_DFPFPLGWL_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.81640625	2	546.28166	1090.54877	-0.10613	-5.7976E-05	1.7006	0.00092902	1.5945	0.00087105	546.2824516733234	66.986	0.47005	66.738	66.65	67.12	-0.24839					14	12	2	0	0	0	0.024466	1	7712	7712		42.474	6.8562	1	475560			6561	10150	4121	4138	8148	8148					0.007115459369288146
DFPVNHEESR	10	Unmodified	_DFPVNHEESR_					0	0	0		ENST00000370282.7_1_1:93645835-93645964:-|nuORF	ENST00000370282.7_1_1:93645835-93645964:-|nuORF	ENST00000370282.7_1_1:93645835-93645964:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.73486328125	3	410.523031	1228.54726	-0.10668	-4.3796E-05	0.17621	7.234E-05	0.069529	2.8543E-05	410.8574849433759	30.824	0.57468	30.671	30.511	31.085	-0.15231					23	13	2	0	0	0	0.03519	1	1998	1998		17.167	0	1	121820			6562	12953	4122	4139	8149	8149					-0.05786739889776982
DFQQYLPLL	9	Unmodified	_DFQQYLPLL_					0	0	0		RANBP6|p.V634L|1|0.37|ENSG00000137040|chr9:6013708-6013708|C/G|missense_variant	RANBP6|p.V634L|1|0.37|ENSG00000137040|chr9:6013708-6013708|C/G|missense_variant	RANBP6|p.V634L|1|0.37|ENSG00000137040|chr9:6013708-6013708|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8036499023438	2	568.802957	1135.59136	-0.7512	-0.00042728	1.1159	0.0006347	0.36466	0.00020742	568.8032728203835	97.335	1.6791	97.335	96.925	98.604	0					87	38	4	0	0	0	0.70186	1	12496	12496		45.952	1.8352	1	1393200			6563	19027	4123	4140	8150	8150					0.028988962745188473
DFRAAASAF	9	Unmodified	_DFRAAASAF_					0	0	0		ENST00000603611.5_1_14:35591106-35591253:+|nuORF	ENST00000603611.5_1_14:35591106-35591253:+|nuORF	ENST00000603611.5_1_14:35591106-35591253:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.23492431640625	2	478.235242	954.45593	-0.46042	-0.00022019	0.23451	0.00011215	-0.22591	-0.00010804	478.23528966741213	45.102	0.9926	44.953	44.422	45.415	-0.1488					86	28	5	0	0	0	0.15029	1	4346	4346		99.375	6.2317	1	4762800			6564	17546	4124	4141	8151	8151					-0.023119587964401944
DFRDKLSP	8	Unmodified	_DFRDKLSP_					0	0	0		ENST00000592462.5_1_17:42452826-42458421:-|nuORF;nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B	ENST00000592462.5_1_17:42452826-42458421:-|nuORF	ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.7721252441406	2	489.256174	976.497795	-0.25304	-0.0001238	3.6	0.0017613	3.3469	0.0016375	489.2577553734801	42.123	0.88663	41.99	41.716	42.602	-0.13219					55	25	3	0	0	0	0.027866	1	3927	3927		40.778	17.736	1	1332900			6565	779	4125	4142	8152	8152					0.00860596892096055
DFSNFKKVL	9	Unmodified	_DFSNFKKVL_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3027954101562	2	549.303124	1096.5917	-0.61842	-0.0003397	0.10999	6.0418E-05	-0.50843	-0.00027928	549.3031625449072	78.887	1.7112	78.695	78.298	80.009	-0.1921					129	40	6	0	0	0	0.72875	1	9777	9777		44.117	2.6902	1	14463000			6566	18187	4126	4143	8153	8153					0.04726315994366814
DFSPSLSRIDL	11	Unmodified	_DFSPSLSRIDL_					0	0	0		ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2457580566406	3	417.218949	1248.63502	-0.5254	-0.00021921	2.709	0.0011303	2.1836	0.00091105	417.55410055728134	28.689	0.17419	28.52	28.424	28.598	-0.16897					5	3	2	0	0	0	0.024738	1	1697	1697		37.6	12.474	1	31272			6567	3175	4127	4144	8154	8154					0.02064460981000593
DFTVLVDRA	9	Unmodified	_DFTVLVDRA_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000496420.5_1_7:92131189-92135604:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.32373046875	2	518.277106	1034.53966	0.39655	0.00020552	-0.44968	-0.00023306	-0.053127	-2.7534E-05	518.2775172489313	50.8	0.14505	50.524	50.407	50.552	-0.27643					5	3	2	0	0	0	0.024466	1	5173	5173		31.53	0	1	130360			6568	4271	4128	4145	8155	8155					0.023771525806068894
DFVKTIKV	8	Unmodified	_DFVKTIKV_					0	0	0			REV__nc|ENSG00000153774|Q9UEE9-2|CFDP1	REV__nc|ENSG00000153774|Q9UEE9-2|CFDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.29010009765625	2	475.289485	948.564418	2.0211	0.00096059	-1.481	-0.00070389	0.54008	0.00025669	475.2886468791314	59.049	1.3031	58.862	58.173	59.476	-0.18705					88	35	4	0	0	0	0.94517	1	6716	6716		45.952	3.0877	1	10702000	+		6569	24909	4129	4146	8156	8156					0.08807832453999254
DFWLRLKR	8	Unmodified	_DFWLRLKR_					0	0	0		ENST00000493155.1_1_1:213124884-213125846:+|nuORF	ENST00000493155.1_1_1:213124884-213125846:+|nuORF	ENST00000493155.1_1_1:213124884-213125846:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3312377929688	2	567.33255	1132.65055	-0.25865	-0.00014674	-3.8369	-0.0021768	-4.0955	-0.0023235	567.3302396632416	88.151	1.3013	87.981	87.036	88.338	-0.17053					97	31	4	0	0	0	1.0574	1	10774	10774		4.3163	0.33103	1	1743200			6570	15495	4130	4147	8157	8157					0.08952837079368692
DGAGYDGR	8	Unmodified	_DGAGYDGR_					0	0	0			REV__ENST00000507650.1_1_12:54431690-54447061:+|nuORF	REV__ENST00000507650.1_1_12:54431690-54447061:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	2	405.672474	809.330395	0.064153	2.6025E-05	3.5166	0.0014266	3.5808	0.0014526	405.67340522109043	45.556	0.16987	45.404	45.276	45.446	-0.15156					9	4	3	0	0	0	0.027866	1	4417	4417		16.473	0	1	82205	+		6571	34050	4131	4148	8158	8158					-0.08189670652654968
DGAKLHVI	8	Unmodified	_DGAKLHVI_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2710266113281	2	426.750527	851.486502	-0.80395	-0.00034309	1.7254	0.00073632	0.92146	0.00039324	426.75104371892667	39.303	0.4278	39.204	38.949	39.377	-0.098755					15	11	2	0	0	0	0.027866	1	3345	3345		31.955	6.5047	1	149930	+		6572	23261	4132	4149	8159	8159					0.054818195886127796
DGALCTLLAI	10	Unmodified	_DGALCTLLAI_					0	0	0			REV__ENST00000381962.3_1_20:628196-628502:-|nuORF	REV__ENST00000381962.3_1_20:628196-628502:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.26025390625	2	495.270435	988.526318	-0.54531	-0.00027008	4.104	0.0020326	3.5587	0.0017625	495.27219790650037	29.445	0.39154	29.448	29.24	29.631	0.0031357					14	9	2	0	0	0	0.03519	1	1811	1811		20.947	6.2828	1	122180	+		6573	31530	4133	4150	8160	8160					0.03159578477016112
DGALEETKVKL	11	Unmodified	_DGALEETKVKL_					0	0	0		nc|ENSG00000166069|Q8N6Q1-2|TMCO5A;ENSG00000166069|ENST00000319669|TMCO5A	nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.55963134765625	3	401.559082	1201.65542	-0.69266	-0.00027814	1.7245	0.00069249	1.0319	0.00041435	401.559759658279	35.545	1.4441	35.358	35.023	36.467	-0.18675					96	38	4	0	0	0	0.64701	1	2674	2674		66.962	8.7157	1	10944000			6574	7502	4134	4151	8161	8161					0.06265631640781066
DGALSRHAK	9	Unmodified	_DGALSRHAK_					0	0	0		AP3B2|p.G592D|1|0.33|ENSG00000103723|chr15:82666824-82666824|C/T|missense_variant	AP3B2|p.G592D|1|0.33|ENSG00000103723|chr15:82666824-82666824|C/T|missense_variant	AP3B2|p.G592D|1|0.33|ENSG00000103723|chr15:82666824-82666824|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	477.759415	953.504277	0.10212	4.8787E-05	-0.40452	-0.00019327	-0.30241	-0.00014448	477.7590373841382	37.279	0.81923	37.311	37.035	37.854	0.032269					32	21	2	0	0	0	0.023635	1	3044	3044		56.721	0	1	225580			6575	99	4135	4152	8162	8162					0.02566534843458612
DGALVYIV	8	Unmodified	_DGALVYIV_					0	0	0			REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.263427734375	2	425.239461	848.46437	-1.2052	-0.0005125	1.2494	0.00053129	0.044167	1.8782E-05	425.23926132858026	46.326	0.35406	46.174	45.989	46.344	-0.15156					11	9	2	0	0	0	0.027866	1	4562	4562		41.208	7.6928	1	141990	+		6576	25025	4136	4153	8163	8163					0.03407595120188489
DGANFVKVQ	9	Unmodified	_DGANFVKVQ_					0	0	0			REV__ENSG00000132825|ENST00000370996|PPP1R3D	REV__ENSG00000132825|ENST00000370996|PPP1R3D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7720031738281	2	489.256174	976.497795	0.25244	0.00012351	2.9418	0.0014393	3.1943	0.0015628	489.25751152334215	41.967	0.84651	41.967	41.688	42.534	0					69	24	4	0	0	0	0.024477	1	3913	3913		27.882	11.409	1	1587200	+		6577	23323	4137	4154	8164	8164					0.00860596892096055
DGAPIVPNL	9	Unmodified	_DGAPIVPNL_					0	0	0		ENSG00000175535|ENST00000369221|PNLIP	ENSG00000175535|ENST00000369221|PNLIP	ENSG00000175535|ENST00000369221|PNLIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2584228515625	2	448.247818	894.481082	0.44945	0.00020146	-3.9554	-0.001773	-3.506	-0.0015715	448.2483520902075	42.373	0.34778	42.373	42.222	42.569	0					12	9	2	0	0	0	0.024294	1	3917	3917		37.159	2.9866	1	92830			6578	8569	4138	4155	8165	8165					0.029620960061379265
DGARPRAR	8	Unmodified	_DGARPRAR_					0	0	0			REV__ENST00000334801.7_1_11:118781071-118781260:-|nuORF	REV__ENST00000334801.7_1_11:118781071-118781260:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2813720703125	2	449.751924	897.489296	0.51746	0.00023273	4.1468	0.001865	4.6643	0.0020978	449.75294372960946	51.413	0.18317	51.413	51.248	51.431	0					6	4	2	0	0	0	0.027866	1	5440	5440		19.36	0	1	44740	+		6579	30525	4139	4156	8166	8166					0.03645087766130928
DGAYNMVR	8	Unmodified	_DGAYNMVR_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569474.5_1_16:67573772-67574407:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.23193359375	2	463.213452	924.412351	-1.2837	-0.00059464	2.625	0.0012159	1.3413	0.0006213	463.214460483143	29.302	0.78778	29.302	28.904	29.692	0					26	19	2	0	0	0	0.027866	1	1723	1723		21.96	10.449	1	185920			6580	1061	4140	4157	8167	8167					-0.05287891565217251
DGDDRLNV	8	Unmodified	_DGDDRLNV_					0	0	0			REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2421875	2	452.211963	902.409374	-0.874	-0.00039523	1.6716	0.00075593	0.79763	0.0003607	452.21342876653995	53.9	0.36319	53.764	53.564	53.928	-0.13617					16	11	2	0	0	0	0.027866	1	5705	5705		40.573	16.37	1	558430	+		6581	21819	4141	4158	8168	8168					-0.04573443418382794
DGDIEMPK	8	Unmodified	_DGDIEMPK_					0	0	0			REV__ENSG00000092377|ENST00000383032|TBL1Y	REV__ENSG00000092377|ENST00000383032|TBL1Y	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2425231933594	2	452.707668	903.400783	-0.42932	-0.00019436	-2.1753	-0.00098476	-2.6046	-0.0011791	452.7066086404536	53.563	0.18198	53.659	53.518	53.7	0.095669					6	4	2	0	0	0	0.027866	1	5716	5716		26.796	13.021	1	61510	+		6582	20931	4142	4159	8169	8169					-0.05478133379222072
DGELVTQVPLY	11	Unmodified	_DGELVTQVPLY_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000152818|P46939-3|UTRN	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	617.3208618164062	2	617.321711	1232.62887	0.020174	1.2454E-05	0.16099	9.9384E-05	0.18117	0.00011184	617.3217068467985	78.683	0.81005	78.527	78.128	78.938	-0.15592					51	18	4	0	0	0	0.96599	1	9394	9394		44.377	7.9304	1	1012200	+		6583	28526;24867;36792	4143	4160	8170	8170					0.021859427494746342
DGELVTQVPLY	11	Unmodified	_DGELVTQVPLY_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000152818|P46939-3|UTRN	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	617.321711	1232.62887	-0.36191	-0.00022342	0.53359	0.0003294	0.17168	0.00010598	617.3219755410814	78.813	0.64185	78.558	78.297	78.939	-0.25471	0.024903	1.4663E-05	NaN	44.377	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863260	+		6584	28526;24867;36792	4143	4160							0.021859427494746342
DGELVTQVPLY	11	Unmodified	_DGELVTQVPLY_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000152818|P46939-3|UTRN	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	617.321711	1232.62887	-0.45402	-0.00028028	0.8129	0.00050182	0.35888	0.00022154	617.3220704367639	78.746	0.72766	78.514	78.134	78.861	-0.23141	-0.018967	0.00035951	NaN	44.377	55	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	829890	+		6585	28526;24867;36792	4143	4160							0.021859427494746342
DGELVTQVPLY	11	Unmodified	_DGELVTQVPLY_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000152818|P46939-3|UTRN	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	617.321711	1232.62887	0.020174	1.2454E-05	0.16099	9.9384E-05	0.18117	0.00011184	617.3217068467985	78.683	0.81005	78.527	78.128	78.938	-0.15592	-0.0059361	-0.00044536	NaN	44.377	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1012200	+		6586	28526;24867;36792	4143	4160							0.021859427494746342
DGFIALLPM	9	Unmodified	_DGFIALLPM_					0	0	0		PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.76397705078125	2	488.762246	975.50994	-0.12957	-6.3331E-05	2.495	0.0012195	2.3654	0.0011561	488.76357364619463	40.802	1.0683	40.576	40.368	41.436	-0.22588					44	27	3	0	0	0	0.75282	1	3558	3558		42.474	1.0478	1	1626000			6587	10118	4144	4161	8171	8171					0.021204973109433922
DGFIALLPM	9	Unmodified	_DGFIALLPM_					0	0	0		PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.76397705078125	2	488.762246	975.50994	-0.97052	-0.00047435	3.2638	0.0015952	2.2932	0.0011208	488.76390983999875	40.846	0.85697	40.616	40.378	41.235	-0.23029					34	22	2	0	0	0	0.78069	1	3557	3557		40.573	1.3198	1	1754700			6588	10118	4144	4161	8172	8172					0.021204973109433922
DGGCCGGDGN	10	Unmodified	_DGGCCGGDGN_					0	0	0		ENSG00000158125|ENST00000379416|XDH;XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.3027038574219	2	427.623809	853.233066	0.45438	0.00019431	-3.3638	-0.0014385	-2.9094	-0.0012441	427.62232681881295	69.899	0.61386	69.677	69.474	70.087	-0.22245					23	14	2	0	0	0	0.03519	1	8136	8136		17.468	2.6031	1	77359			6589	6647	4145	4162	8173	8173					-0.19942143915466204
DGGNMALK	8	Unmodified	_DGGNMALK_					0	0	0		ENSG00000185697|ENST00000522677|MYBL1;nc|ENSG00000185697|P10243-2|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5537414550781	2	403.19727	804.379988	0.11016	4.4416E-05	-4.2542	-0.0017153	-4.1441	-0.0016709	403.19546562692057	30.033	0.80463	29.789	29.143	29.948	-0.24415					22	18	2	0	0	0	0.027866	1	1808	1808		7.1934	0	1	46111			6590	9465	4146	4163	8174	8174					-0.030026789682324306
DGGPIRLR	8	Unmodified	_DGGPIRLR_					0	0	0			REV__ENST00000530083.1_1_11:777645-783680:+|nuORF	REV__ENST00000530083.1_1_11:777645-783680:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.22503662109375	2	442.259051	882.503549	-0.82894	-0.00036661	-0.1938	-8.5709E-05	-1.0227	-0.00045232	442.2594095875146	27.156	2.3252	27.237	26.249	28.575	0.081293					186	58	5	0	0	0	0.027866	1	1332	1332		3.1592	0	1	65640000	+		6591	34528	4147	4164	8175	8175					0.057597401944121884
DGGPLDRVSL	10	Unmodified	_DGGPLDRVSL_					0	0	0		ENST00000441944.2_1_9:7597894-7598236:+|nuORF	ENST00000441944.2_1_9:7597894-7598236:+|nuORF	ENST00000441944.2_1_9:7597894-7598236:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7701416015625	2	514.772188	1027.52982	-0.87471	-0.00045028	0.42808	0.00022037	-0.44662	-0.00022991	514.7724367544774	43.246	0.83509	43.246	42.895	43.731	0					62	22	4	0	0	0	0.61732	1	4029	4029		75.043	7.5496	1	7507600			6592	14369	4148	4165	8176	8176					0.017159645752371944
DGGPLKRW	8	Unmodified	_DGGPLKRW_					0	0	0			REV__ENST00000286448.11_1_X:155119185-155119230:+|nuORF	REV__ENST00000286448.11_1_X:155119185-155119230:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.77545166015625	2	464.753601	927.49265	0.81899	0.00038063	-1.5447	-0.00071789	-0.72568	-0.00033726	464.75260551136444	51.065	0.79833	50.954	50.749	51.548	-0.11163					40	20	3	0	0	0	0.027866	1	5243	5243		37.159	1.5408	1	1001200	+		6593	29918	4149	4166	8177	8177					0.026003378201380656
DGGTKLTE	8	Unmodified	_DGGTKLTE_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-2|CEP170	REV__nc|ENSG00000143702|Q5SW79-2|CEP170	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.73468017578125	2	410.705983	819.397412	-0.20309	-8.3409E-05	1.5927	0.00065415	1.3897	0.00057074	410.70662699218457	31.192	0.4012	30.951	30.711	31.112	-0.24109					15	9	3	0	0	0	0.027866	1	2042	2042		11.511	0	1	63901	+		6594	24275	4150	4167	8178	8178					-0.019510601615706946
DGGVSRRL	8	Unmodified	_DGGVSRRL_					0	0	0		ENST00000337288.9_2_2:96861281-96874146:-|nuORF	ENST00000337288.9_2_2:96861281-96874146:-|nuORF	ENST00000337288.9_2_2:96861281-96874146:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.27667236328125	2	430.240858	858.467164	0.29147	0.0001254	3.0745	0.0013228	3.366	0.0014482	430.24189192833677	42.738	0.71753	42.626	42.245	42.962	-0.11253					31	18	3	0	0	0	0.027866	1	3910	3910		51.335	0	1	171940			6595	12419	4151	4168	8179	8179					0.03226863297709315
DGGWHPVLV	9	Unmodified	_DGGWHPVLV_					0	0	0			REV__ENST00000320033.4_1_17:41477745-41477949:+|nuORF	REV__ENST00000320033.4_1_17:41477745-41477949:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.82989501953125	2	490.253434	978.492316	-0.49389	-0.00024213	-2.9659	-0.001454	-3.4597	-0.0016961	490.2519158003775	66.897	0.42696	66.921	66.601	67.028	0.023911					14	9	2	0	0	0	0.024386	1	7843	7843		42.474	0	1	430920	+		6596	30329	4152	4169	8180	8180					0.002209181002740479
DGHGGNFNRSY	11	Unmodified	_DGHGGNFNRSY_					0	0	0		ENST00000472077.1_1_2:27609932-27632289:-|nuORF	ENST00000472077.1_1_2:27609932-27632289:-|nuORF	ENST00000472077.1_1_2:27609932-27632289:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	612.261474609375	2	612.26305	1222.51155	0.42577	0.00026068	-1.7002	-0.0010409	-1.2744	-0.00078026	612.2619199733635	54.521	0.77484	54.315	53.947	54.722	-0.20613					55	20	4	0	0	0	0.58492	1	5790	5790		70.816	10.698	1	1813200			6597	14982	4153	4170	8181	8181					-0.09080777346753166
DGHGGNFNRSY	11	Unmodified	_DGHGGNFNRSY_					0	0	0		ENST00000472077.1_1_2:27609932-27632289:-|nuORF	ENST00000472077.1_1_2:27609932-27632289:-|nuORF	ENST00000472077.1_1_2:27609932-27632289:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	612.26305	1222.51155	-1.7403	-0.0010655	0.26152	0.00016012	-1.4788	-0.00090542	612.2631059556968	54.425	0.77495	54.289	53.959	54.734	-0.13616	-0.036678	0.0013084	NaN	70.816	62	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2012000			6598	14982	4153	4170							-0.09080777346753166
DGHGGNFNRSY	11	Unmodified	_DGHGGNFNRSY_					0	0	0		ENST00000472077.1_1_2:27609932-27632289:-|nuORF	ENST00000472077.1_1_2:27609932-27632289:-|nuORF	ENST00000472077.1_1_2:27609932-27632289:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	612.26305	1222.51155	-0.293	-0.00017939	-1.0582	-0.00064792	-1.3512	-0.00082731	612.2623165420622	54.603	0.76483	54.372	54.056	54.821	-0.23087	0.046563	-0.00030771	NaN	70.816	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1673100			6599	14982	4153	4170							-0.09080777346753166
DGHSDPEESF	10	Unmodified	_DGHSDPEESF_					0	0	0		nc|ENSG00000141699|Q86VR2-2|RETREG3;ENSG00000141699|ENST00000309428|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2180786132812	2	560.2149	1118.41525	-1.186	-0.00066443	-1.8833	-0.0010551	-3.0694	-0.0017195	560.2128529005537	44.026	0.19262	43.807	43.672	43.864	-0.21939					6	4	2	0	0	0	0.03519	1	4069	4069		68.787	15.435	1	87479			6600	5517	4154	4171	8182	8182					-0.13922389697381732
DGIHLILRG	9	Unmodified	_DGIHLILRG_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.296630859375	2	497.295633	992.576714	0.25138	0.00012501	3.6265	0.0018034	3.8779	0.0019284	497.2973155057873	69.385	1.6056	69.385	68.56	70.166	0					126	43	4	0	0	0	0.70186	1	8329	8329		45.952	3.5558	1	3758800	+		6601	27656	4155	4172	8183	8183					0.0801286891704649
DGILKTATK	9	Unmodified	_DGILKTATK_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.78167724609375	2	473.782025	945.549496	1.6966	0.00080383	-0.56973	-0.00026993	1.1269	0.0005339	473.78163175453676	23.641	0.53668	23.45	23.124	23.66	-0.19117					40	12	4	0	0	0	0.77768	1	929	929		40.778	2.9666	1	1562200	+		6602	25591	4156	4173	8184	8184					0.07454340585991304
DGIRNIVLS	9	Unmodified	_DGIRNIVLS_					0	0	0		ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	493.785099	985.555644	-0.069567	-3.4351E-05	-0.37455	-0.00018495	-0.44412	-0.0002193	493.78489531697153	41.547	0.77483	41.424	41.155	41.93	-0.12318					58	21	4	0	0	0	0.024288	1	3772	3772		44.377	0	1	3027400			6603	4799	4157	4174	8185	8185					0.062288588175078985
DGKEIKDDV	9	Unmodified	_DGKEIKDDV_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2944030761719	2	509.756204	1017.49785	0.02602	1.3264E-05	-4.1582	-0.0021197	-4.1322	-0.0021064	509.75303870982725	63.877	0.5407	63.626	63.372	63.912	-0.25141					22	14	2	0	0	0	0.024344	1	7451	7451		45.972	0	1	117460			6604	2351	4158	4175	8186	8186					-0.010194478985567912
DGKELQFV	8	Unmodified	_DGKELQFV_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2444152832031	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	0.97924	1	12891	12891		40.573	5.3719	1	4477100	+		6605	28905	4159	4176	8187	8187					0.006137921435311
DGKKKKLL	8	Unmodified	_DGKKKKLL_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.76409912109375	2	465.310752	928.606951	0.48268	0.0002246	-0.53607	-0.00024944	-0.05339	-2.4843E-05	465.31026361623026	21.83	0.52512	21.652	21.397	21.923	-0.17721					19	10	2	0	0	0	0.027866	1	701	701		7.6903	0	1	108580	+		6606	20581	4160	4177	8188	8188					0.13979227582240128
DGKSAKQN	8	Unmodified	_DGKSAKQN_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2186584472656	2	424.217049	846.419545	-0.22547	-9.5648E-05	3.6889	0.0015649	3.4634	0.0014692	424.2185251046166	98.415	2.1934	98.415	97.594	99.787	0					127	50	5	0	0	0	0.89627	4	12566	12554;12566;12590;12602		51.335	12.529	1	7415800			6607	2053	4161	4178	8189;8190;8191;8192	8190					-0.009808356931443996
DGKSAKQN	8	Unmodified	_DGKSAKQN_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.2186584472656	2	424.217049	846.419545	0.15091	6.4021E-05	3.3998	0.0014423	3.5507	0.0015063	424.2184034867315	98.49	2.0564	98.5	97.728	99.785	0.010239					126	47	5	0	0	0	0.96769	4	12538	12538;12549;12585;12609		42.396	13.247	1	7266600			6608	2053	4161	4178	8193;8194;8195;8196	8193					-0.009808356931443996
DGKSAKQN	8	Unmodified	_DGKSAKQN_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.21856689453125	2	424.217049	846.419545	0.85808	0.00036401	2.6118	0.001108	3.4698	0.001472	424.21808049737785	98.51	2.2248	98.507	97.634	99.859	-0.0026703					125	51	4	0	0	0	0.96769	4	12502	12502;12514;12526;12575		42.396	6.7778	1	7197400			6609	2053	4161	4178	8197;8198;8199;8200	8197					-0.009808356931443996
DGKSAKQN	8	Unmodified	_DGKSAKQN_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.2186584472656	2	424.217049	846.419545	0.87142	0.00036967	2.8058	0.0011903	3.6773	0.00156	424.2181747148938	99.092	1.6406	98.957	98.148	99.788	-0.13526					107	39	4	0	0	0	0.77775	4	12274	12274;12285;12296;12311		60.972	20.399	1	5421400			6610	2053	4161	4178	8201;8202;8203;8204	8201					-0.009808356931443996
DGKSAKQN	8	Unmodified	_DGKSAKQN_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2187194824219	2	424.217049	846.419545	1.1723	0.00049729	2.4796	0.0010519	3.6519	0.0015492	424.21803932906255	99.133	1.6852	99.009	98.111	99.796	-0.12458					116	42	4	0	0	0	0.89627	5	12291	12291;12301;12312;12320;12328		51.335	10.763	1	4851200			6611	2053	4161	4178	8205;8206;8207;8208;8209	8205					-0.009808356931443996
DGKSAKQN	8	Unmodified	_DGKSAKQN_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2187194824219	2	424.217049	846.419545	0.068932	2.9242E-05	3.4089	0.0014461	3.4779	0.0014754	424.21842173588857	95.216	1.646	95.064	94.324	95.97	-0.15186					65	37	2	0	0	0	1.0516	1	11740	11740		29.15	0.89528	1	275470			6612	2053	4161	4178	8210	8210					-0.009808356931443996
DGKSAKQN	8	Unmodified	_DGKSAKQN_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.21875	2	424.217049	846.419545	0.29841	0.00012659	3.2518	0.0013795	3.5502	0.0015061	424.2183732670556	99.233	1.6227	99.064	98.24	99.863	-0.16863					102	39	4	0	0	0	0.77775	3	12279	12279;12336;12348		60.972	15.02	1	4500900			6613	2053	4161	4178	8211;8212;8213	8211					-0.009808356931443996
DGKSHWVF	8	Unmodified	_DGKSHWVF_					0	0	0		nc|ENSG00000259024|Q96ET8|TVP23C;ENST00000557349.5_3_17:15341430-15450444:-|nuORF;ENST00000572845.1_1_17:18700909-18702331:+|nuORF;nc|ENSG00000259024|Q96ET8-2|TVP23C;ENSG00000175106|ENST00000518321|TVP23C;ENSG00000171928|ENST00000307767|TVP23B	nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2375793457031	2	488.237784	974.461016	-1.0927	-0.00053349	0.81799	0.00039937	-0.27469	-0.00013411	488.2380136487519	48.579	0.9278	48.479	48.22	49.148	-0.099808					59	24	4	0	0	0	0.59392	1	4843	4843		76.847	16.553	1	1876500			6614	18780	4162	4179	8214	8214					-0.027236549338113036
DGKSHWVF	8	Unmodified	_DGKSHWVF_					0	0	0		nc|ENSG00000259024|Q96ET8|TVP23C;ENST00000557349.5_3_17:15341430-15450444:-|nuORF;ENST00000572845.1_1_17:18700909-18702331:+|nuORF;nc|ENSG00000259024|Q96ET8-2|TVP23C;ENSG00000175106|ENST00000518321|TVP23C;ENSG00000171928|ENST00000307767|TVP23B	nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.237784	974.461016	-0.62504	-0.00030517	0.25113	0.00012261	-0.37391	-0.00018256	488.2377593427106	48.937	0.76448	48.657	48.322	49.086	-0.27977	0.083814	4.9135E-05	NaN	76.847	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2100000			6615	18780	4162	4179							-0.027236549338113036
DGKSHWVF	8	Unmodified	_DGKSHWVF_					0	0	0		nc|ENSG00000259024|Q96ET8|TVP23C;ENST00000557349.5_3_17:15341430-15450444:-|nuORF;ENST00000572845.1_1_17:18700909-18702331:+|nuORF;nc|ENSG00000259024|Q96ET8-2|TVP23C;ENSG00000175106|ENST00000518321|TVP23C;ENSG00000171928|ENST00000307767|TVP23B	nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	488.237784	974.461016	-0.010946	-5.3444E-06	-0.38152	-0.00018627	-0.39247	-0.00019162	488.2374616899783	48.766	0.92238	48.584	48.268	49.19	-0.18206	0.010548	-0.00056863	NaN	76.847	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1774500			6616	18780	4162	4179							-0.027236549338113036
DGKYSQVL	8	Unmodified	_DGKYSQVL_					0	0	0		ENST00000407538.2_1_6:141243712-141243922:-|nuORF;ENST00000445477.1_1_22:31955550-31955922:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000407538.2_1_6:141243712-141243922:-|nuORF	ENST00000407538.2_1_6:141243712-141243922:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.2374572753906	2	455.23745	908.460347	-0.078384	-3.5683E-05	0.056391	2.5671E-05	-0.021993	-1.0012E-05	455.2373593135765	43.361	0.99012	43.249	42.927	43.917	-0.11253					68	26	4	0	0	0	0.26388	3	3961	3961;3970;3982		127.46	28.087	1	5884100			6617	10698	4163	4180	8215;8216;8217	8215					0.002455056264693667
DGKYSQVL	8	Unmodified	_DGKYSQVL_					0	0	0		ENST00000407538.2_1_6:141243712-141243922:-|nuORF;ENST00000445477.1_1_22:31955550-31955922:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000407538.2_1_6:141243712-141243922:-|nuORF	ENST00000407538.2_1_6:141243712-141243922:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2371826171875	2	455.23745	908.460347	-0.66915	-0.00030462	0.50227	0.00022865	-0.16689	-7.5973E-05	455.23754411722865	43.556	0.99518	43.318	42.879	43.874	-0.23736					68	26	4	0	0	0	0.29644	2	3976	3976;4015		113.41	19.253	1	5563300			6618	10698	4163	4180	8218;8219	8218					0.002455056264693667
DGKYSQVL	8	Unmodified	_DGKYSQVL_					0	0	0		ENST00000407538.2_1_6:141243712-141243922:-|nuORF;ENST00000445477.1_1_22:31955550-31955922:+|nuORF;ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18	ENST00000407538.2_1_6:141243712-141243922:-|nuORF	ENST00000407538.2_1_6:141243712-141243922:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.23760986328125	2	455.23745	908.460347	-0.81466	-0.00037086	0.55768	0.00025388	-0.25699	-0.00011699	455.2376035140638	43.521	1.4096	43.296	42.485	43.894	-0.22536					75	37	4	0	0	0	0.2677	1	3981	3981		125.81	8.9104	1	5516700			6619	10698	4163	4180	8220	8220					0.002455056264693667
DGLATRLGL	9	Unmodified	_DGLATRLGL_					0	0	0		ENST00000550249.2_1_2:74725056-74728711:-|nuORF;nc|ENSG00000179528|Q6XYB7-2|LBX2;ENSG00000179528|ENST00000377566|LBX2	ENST00000550249.2_1_2:74725056-74728711:-|nuORF	ENST00000550249.2_1_2:74725056-74728711:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2394104003906	2	458.266542	914.51853	-0.16026	-7.344E-05	-0.70517	-0.00032315	-0.86542	-0.00039659	458.2660366991672	33.537	0.35646	33.537	33.421	33.777	0					12	9	2	0	0	0	0.02435	1	2431	2431		42.396	3.1433	1	86805			6620	8900	4164	4181	8221	8221					0.05785187271760606
DGLFTDITL	9	Unmodified	_DGLFTDITL_					0	0	0		ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.296630859375	2	497.758215	993.501877	0.11982	5.9643E-05	3.8416	0.0019122	3.9614	0.0019718	497.76010737024865	69.315	0.53219	69.315	69.056	69.588	0					24	13	2	0	0	0	0.024374	1	8329	8329		58.782	29.632	1	214570			6621	10492	4165	4182	8222	8222					0.004866415951369163
DGLISLVVQ	9	Unmodified	_DGLISLVVQ_					0	0	0		nc|ENSG00000143627|P30613-2|PKLR;ENSG00000143627|ENST00000342741|PKLR	nc|ENSG00000143627|P30613-2|PKLR	nc|ENSG00000143627|P30613-2|PKLR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.27716064453125	2	472.276575	942.538597	0.36088	0.00017044	-1.0345	-0.00048855	-0.67358	-0.00031812	472.2758417221682	56.235	1.2855	56.235	55.249	56.535	0					51	35	2	0	0	0	0.75397	1	6287	6287		42.396	1.618	1	5548200			6622	5675	4166	4183	8223	8223					0.06502938211713172
DGLKKKADK	9	Unmodified	_DGLKKKADK_					0	0	0			REV__CON__Q8VED5	REV__CON__Q8VED5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7876281738281	2	501.800749	1001.58694	-0.57401	-0.00028804	-0.3806	-0.00019099	-0.95461	-0.00047903	501.8003392243928	32.412	0.44831	32.424	32.182	32.63	0.011799					28	11	3	0	0	0	0.024374	1	2204	2204		40.778	0	1	938450	+	+	6623	19602	4167	4184	8224	8224					0.08621431851599937
DGLKSLSLCSC	11	Unmodified	_DGLKSLSLCSC_					0	0	0		ENSG00000171823|ENST00000339235|FBXL14	ENSG00000171823|ENST00000339235|FBXL14	ENSG00000171823|ENST00000339235|FBXL14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.267578125	2	563.267567	1124.52058	0.1725	9.7165E-05	-0.37324	-0.00021023	-0.20074	-0.00011307	563.2674026963554	23.54	1.6335	23.338	23.014	24.648	-0.20193					85	37	5	0	0	0	0.95664	1	965	965		46.457	0	1	6659700			6624	8199	4168	4185	8225	8225					-0.03669888096942486
DGLLLRDI	8	Unmodified	_DGLLLRDI_					0	0	0			REV__ENSG00000165102|ENST00000379644|HGSNAT	REV__ENSG00000165102|ENST00000379644|HGSNAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2394714355469	2	457.768917	913.523281	-0.57666	-0.00026398	-0.73759	-0.00033764	-1.3143	-0.00060162	457.7683194619871	33.201	0.53099	33.208	32.967	33.498	0.0066261					31	14	3	0	0	0	0.027866	1	2397	2397		29.15	0	1	789530	+		6625	25838	4169	4186	8226	8226					0.06306071414508096
DGLLLRDI	8	Unmodified	_DGLLLRDI_					0	0	0			REV__ENSG00000165102|ENST00000379644|HGSNAT	REV__ENSG00000165102|ENST00000379644|HGSNAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2395935058594	2	457.768917	913.523281	0.78845	0.00036093	-2.1822	-0.00099896	-1.3938	-0.00063803	457.7677423219591	33.076	0.54615	33.133	32.877	33.423	0.056568					31	14	3	0	0	0	0.027866	1	2346	2346		12.959	0	1	570090	+		6626	25838	4169	4186	8227	8227					0.06306071414508096
DGLLVLVSL	9	Unmodified	_DGLLVLVSL_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2566223144531	2	464.789318	927.564084	-0.65304	-0.00030353	-2.3519	-0.0010931	-3.0049	-0.0013966	464.78814092454536	27.5	0.3281	27.5	27.361	27.689	0					11	8	2	0	0	0	0.024506	1	1514	1514		6.3127	0	1	103740			6627	9891	4170	4187	8228	8228					0.09740412734140591
DGLLVTVNG	9	Unmodified	_DGLLVTVNG_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	444.2452392578125	2	444.245275	886.475997	-0.38856	-0.00017261	0.092758	4.1207E-05	-0.2958	-0.00013141	444.24570454476	102.79	1.6394	102.79	102.21	103.85	0					89	39	5	0	0	0	0.94809	1	13210	13210		29.15	3.6994	1	7543800			6628	6441	4171	4188	8229	8229					0.02821792143527091
DGLRKRPLI	9	Unmodified	_DGLRKRPLI_					0	0	0		nc|nan|Q9BVC5-2|C2orf49;ENSG00000135974|ENST00000258457|C2orf49	nc|nan|Q9BVC5-2|C2orf49	nc|nan|Q9BVC5-2|C2orf49	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7924194335938	2	534.337833	1066.66111	-1.0086	-0.00053893	0.054585	2.9167E-05	-0.95402	-0.00050977	534.3377395706231	44.876	0.39705	44.624	44.429	44.826	-0.25252					14	9	2	0	0	0	0.024477	1	4198	4198		9.7057	0	1	93166			6629	4964	4172	4189	8230	8230					0.1304481973379552
DGLVDLTV	8	Unmodified	_DGLVDLTV_					0	0	0		ITGAM|p.R664Qfs*4|1|0.02|ENSG00000169896|chr16:31321615-31321616|-/AAACA|frameshift_variant;ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM	ITGAM|p.R664Qfs*4|1|0.02|ENSG00000169896|chr16:31321615-31321616|-/AAACA|frameshift_variant	ITGAM|p.R664Qfs*4|1|0.02|ENSG00000169896|chr16:31321615-31321616|-/AAACA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2273864746094	2	416.226551	830.438549	0.079434	3.3063E-05	3.6043	0.0015002	3.6837	0.0015333	416.22848233143117	41.796	1.5129	41.566	41.08	42.593	-0.23029					101	40	5	0	0	0	0.81662	1	3677	3677		57.811	5.5121	1	8086000			6630	7987	4173	4190	8231	8231					0.016547008779070893
DGMIVLLSL	9	Unmodified	_DGMIVLLSL_					0	0	0			REV__ENSG00000124479|ENST00000642620|NDP	REV__ENSG00000124479|ENST00000642620|NDP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.21710205078125	2	480.775354	959.536154	-0.82481	-0.00039655	4.4148	0.0021225	3.59	0.001726	480.77738372293993	37.11	0.66445	36.89	36.607	37.271	-0.2195					42	16	4	0	0	0	0.024323	1	2964	2964		44.117	5.3107	1	1184700	+		6631	22766	4174	4191	8232	8232					0.05476766482399853
DGNIKTAL	8	Unmodified	_DGNIKTAL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.2322998046875	2	416.232168	830.449782	-0.41338	-0.00017206	1.1035	0.00045933	0.69016	0.00028727	416.23252203422743	39.836	0.57082	39.687	39.433	40.004	-0.1497					38	14	4	0	0	0	0.38989	2	3407	3395;3407		98.629	19.178	1	3190100			6632	9339	4175	4192	8233;8234	8234					0.027775229720305106
DGNIKTAL	8	Unmodified	_DGNIKTAL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2323303222656	2	416.232168	830.449782	-0.28437	-0.00011836	1.1806	0.00049141	0.89625	0.00037305	416.232582589715	39.976	0.58037	39.751	39.46	40.041	-0.225					31	14	3	0	0	0	0.42912	2	3418	3407;3418		93.195	13.744	1	2808100			6633	9339	4175	4192	8235;8236	8236					0.027775229720305106
DGPFERLDI	9	Unmodified	_DGPFERLDI_					0	0	0			REV__ENSG00000174348|ENST00000312553|PODN	REV__ENSG00000174348|ENST00000312553|PODN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2779541015625	2	531.266739	1060.51892	-0.50618	-0.00026892	1.2315	0.00065425	0.7253	0.00038533	531.2671280881402	57.857	0.85449	57.857	57.641	58.495	0					47	22	3	0	0	0	0.023061	1	6529	6529		51.193	11.94	1	3610700	+		6634	26856	4176	4193	8237	8237					-0.008914377990549838
DGPGSARKRP	10	Unmodified	_DGPGSARKRP_					0	0	0			REV__ENSG00000101493|ENST00000443185|ZNF516;REV__ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	REV__ENSG00000101493|ENST00000443185|ZNF516	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7844848632812	2	520.783422	1039.55229	0.7045	0.00036689	0.70981	0.00036966	1.4143	0.00073655	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	1.0508	1	13295	13295		39.253	5.3312	1	3641400	+		6635	21239;37807	4177	4194	8238	8238					0.03409608763513461
DGPMHSMEV	9	Unmodified	_DGPMHSMEV_					0	0	0			REV__nc|ENSG00000152942|O75943-3|RAD17	REV__nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8006896972656	2	501.704602	1001.39465	-0.048152	-2.4158E-05	-0.86757	-0.00043527	-0.91573	-0.00045942	502.20623276327194	46.351	0.13274	46.402	46.342	46.474	0.051395					5	3	2	0	0	0	0.024541	1	4528	4528		23.042	0	1	52079	+		6636	24871	4178	4195	8239	8239					-0.10598974882373113
DGPNYQPN	8	Unmodified	_DGPNYQPN_					0	0	0			REV__ENSG00000165409|ENST00000298171|TSHR	REV__ENSG00000165409|ENST00000298171|TSHR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2423095703125	2	452.693407	903.37226	-0.10546	-4.774E-05	-3.0782	-0.0013935	-3.1836	-0.0014412	452.69211721107513	53.871	0.29169	53.724	53.529	53.821	-0.14723					11	7	2	0	0	0	0.027866	1	5839	5839		33.516	15.191	1	124700	+		6637	25884	4179	4196	8240	8240					-0.08329114964146811
DGQRHHSKL	9	Unmodified	_DGQRHHSKL_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7;ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7;ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7926025390625	2	539.281046	1076.54754	-1.6208	-0.00087409	1.657	0.0008936	0.036187	1.9515E-05	539.2818911132125	51.169	0.57653	51.256	51.001	51.577	0.087006					22	15	2	0	0	0	0.024351	1	5318	5318		59.931	0	1	186030			6638	8319;16083	4180	4197	8241	8241					0.012327246207632925
DGQSVYKLT	9	Unmodified	_DGQSVYKLT_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7596130371094	2	505.761289	1009.50803	0.072243	3.6538E-05	-2.1829	-0.001104	-2.1107	-0.0010675	505.7605255283673	106.9	0.66476	106.9	106.47	107.14	0.0018311					37	20	2	0	0	0	0.87448	1	13659	13659		34.173	0.65696	1	287360			6639	9267	4181	4198	8242	8242					0.0036515982666287528
DGREAWFVL	9	Unmodified	_DGREAWFVL_					0	0	0			REV__ENST00000339566.7_1_2:74091641-74092025:+|nuORF	REV__ENST00000339566.7_1_2:74091641-74092025:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.7755126953125	2	546.777274	1091.53999	-0.77624	-0.00042443	-0.26363	-0.00014415	-1.0399	-0.00056858	546.7772751004329	52.43	1.9846	52.522	52.16	54.144	0.091938					110	53	3	0	0	0	0.35646	1	5521	5521		68.787	2.3575	1	8984600	+		6640	30604	4182	4199	8243	8243					-0.002114276995371256
DGRFFAENET	10	Unmodified	_DGRFFAENET_					0	0	0		ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	ENSG00000186340|ENST00000617924|THBS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.2883911132812	2	593.262185	1184.50982	-0.94905	-0.00056304	2.3673	0.0014044	1.4182	0.00084138	593.2637491709377	72.816	0.46508	72.617	72.33	72.795	-0.1981					17	10	2	0	0	0	0.03519	1	8533	8533		39.253	0	1	100310			6641	9541	4183	4200	8244	8244					-0.07505831155390297
DGRGRPRHG	9	Unmodified	_DGRGRPRHG_					0	0	0		ENST00000528533.5_1_11:119181936-119187838:-|nuORF	ENST00000528533.5_1_11:119181936-119187838:-|nuORF	ENST00000528533.5_1_11:119181936-119187838:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2964782714844	2	504.26573	1006.51691	3.5572	0.0017938	1.2248	0.00061762	4.782	0.0024114	504.2661957034529	18.806	0.14655	18.869	18.747	18.893	0.063307					4	2	2	0	0	0	0.024495	1	298	298		34.173	1.3601	1	7438.4			6642	16184	4184	4201	8245	8245					0.013909910263691927
DGRGVLIAV	9	Unmodified	_DGRGVLIAV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENST00000490010.1_1_13:103249388-103260038:+|nuORF;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2691345214844	2	450.269084	898.523616	0.24128	0.00010864	4.3423	0.0019552	4.5836	0.0020638	450.2695732659568	79.227	1.124	79.007	78.662	79.786	-0.21923					64	26	4	0	0	0	0.6504	1	9493	9493		49.442	3.4896	1	794000			6643	18290	4185	4202	8246	8246					0.07029491134380805
DGRGVLIAV	9	Unmodified	_DGRGVLIAV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENST00000490010.1_1_13:103249388-103260038:+|nuORF;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.269084	898.523616	0.75754	0.0003411	3.2641	0.0014697	4.0217	0.0018108	450.2693809663797	79.274	1.4239	79.027	78.609	80.032	-0.2465	0.019221	-0.00070068	NaN	49.442	76	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615170			6644	18290	4185	4202							0.07029491134380805
DGRGVLIAV	9	Unmodified	_DGRGVLIAV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENST00000490010.1_1_13:103249388-103260038:+|nuORF;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.269084	898.523616	0.14395	6.4815E-05	4.5905	0.002067	4.7345	0.0021318	450.26959433051735	79.14	1.4759	78.989	78.432	79.908	-0.15051	-0.018599	0.00049379	NaN	49.442	71	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758780			6645	18290	4185	4202							0.07029491134380805
DGRLLGAGVQG	11	Unmodified	_DGRLLGAGVQG_					0	0	0			REV__ENST00000313005.10_1_11:117167648-117186494:-|nuORF	REV__ENST00000313005.10_1_11:117167648-117186494:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.22705078125	2	521.78563	1041.55671	-0.27715	-0.00014461	2.8872	0.0015065	2.6101	0.0013619	521.7875930336835	35.569	0.55974	35.382	35.061	35.621	-0.18675					29	14	3	0	0	0	0.024765	1	2686	2686		41.427	17.224	1	343280	+		6646	30227	4186	4203	8247	8247					0.037590731864384
DGRPHCGLD	9	Unmodified	_DGRPHCGLD_					0	0	0		ENSG00000104626|ENST00000250263|ERI1	ENSG00000104626|ENST00000250263|ERI1	ENSG00000104626|ENST00000250263|ERI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7616882324219	2	485.213983	968.413413	0.74421	0.0003611	1.2264	0.00059508	1.9706	0.00095618	485.21444681896764	36.878	0.61996	36.878	36.613	37.233	0					28	15	3	0	0	0	0.024397	1	3007	3007		47.657	13.485	1	291420			6647	2584	4187	4204	8248	8248					-0.07205677196316174
DGRVLLNTT	9	Unmodified	_DGRVLLNTT_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7791442871094	2	494.774731	987.534909	1.9109	0.00094546	-0.71617	-0.00035434	1.1947	0.00059111	494.7743704269871	23.994	0.4018	23.813	23.626	24.028	-0.18089					12	8	2	0	0	0	0.024319	1	967	967		56.721	14.325	1	133850			6648	8136	4188	4205	8249	8249					0.04064268437866758
DGSDMSAIIY	10	Unmodified	_DGSDMSAIIY_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11594499-11598073:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2352905273438	2	536.23679	1070.45903	-0.80001	-0.00042899	-3.1899	-0.0017105	-3.9899	-0.0021395	536.2348375049121	67.655	0.86869	67.417	66.878	67.747	-0.23814					43	20	5	0	0	0	0.96965	1	7788	7788		49.442	1.5259	1	992700			6649	6900	4189	4206	8250	8250					-0.07338496524562288
DGSEEIELS	9	Unmodified	_DGSEEIELS_					0	0	0			REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27783203125	2	489.716744	977.418936	-0.030389	-1.4882E-05	0.93092	0.00045589	0.90053	0.000441	489.7172423696441	76.461	0.44991	76.461	76.228	76.678	0					16	10	2	0	0	0	0.024323	1	9433	9433		27.882	0	1	95720	+		6650	27570	4190	4207	8251	8251					-0.0706771992350923
DGSLLYSVVN	10	Unmodified	_DGSLLYSVVN_					0	0	0		ENST00000495794.5_1_5:864585-881375:-|nuORF;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;ENSG00000028310|ENST00000467963|BRD9	ENST00000495794.5_1_5:864585-881375:-|nuORF	ENST00000495794.5_1_5:864585-881375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.774658203125	2	533.774396	1065.53424	-0.64929	-0.00034657	0.57723	0.00030811	-0.072063	-3.8466E-05	533.7746059894222	50.512	1.3612	50.593	50.243	51.604	0.08099					106	38	4	0	0	0	0.74632	1	5216	5216		64.207	2.0999	1	11721000			6651	1004	4191	4208	8252	8252					0.004094289981594557
DGSLLYSVVN	10	Unmodified	_DGSLLYSVVN_					0	0	0		ENST00000495794.5_1_5:864585-881375:-|nuORF;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;ENSG00000028310|ENST00000467963|BRD9	ENST00000495794.5_1_5:864585-881375:-|nuORF	ENST00000495794.5_1_5:864585-881375:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7744750976562	2	533.774396	1065.53424	0.18996	0.0001014	0.33372	0.00017813	0.52368	0.00027953	533.7743914659342	50.781	1.1346	50.67	50.267	51.401	-0.11163					67	29	4	0	0	0	0.88896	1	5180	5180		54.776	0	1	3083600			6652	1004	4191	4208	8253	8253					0.004094289981594557
DGTILKVGVG	10	Unmodified	_DGTILKVGVG_					0	0	0		ENSG00000081177|ENST00000685843|EXD2;nc|ENSG00000081177|Q9NVH0-2|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF	ENSG00000081177|ENST00000685843|EXD2	ENSG00000081177|ENST00000685843|EXD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.8118591308594	2	479.782025	957.549496	0.36988	0.00017746	-0.12347	-5.9241E-05	0.24641	0.00011822	479.78182371777973	57.474	0.57061	57.474	57.148	57.719	0					38	14	4	0	0	0	0.03519	1	6454	6454		40.058	20.061	1	7124800			6653	1706	4192	4209	8254	8254					0.06902340586020728
DGTIRLSRLEL	11	Unmodified	_DGTIRLSRLEL_					0	0	0		ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.912353515625	3	424.91386	1271.71975	-0.67753	-0.00028789	-2.32	-0.00098582	-2.9976	-0.0012737	424.91269257901234	39.098	1.2978	39.098	38.473	39.771	0					99	35	5	0	0	0	1.0022	1	3313	3313		36.318	4.7878	1	12888000			6654	3040	4193	4210	8255	8255					0.09475831517625011
DGTIRLSRLEL	11	Unmodified	_DGTIRLSRLEL_					0	0	0		ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.9133605957031	3	424.91386	1271.71975	-0.60793	-0.00025832	-2.6012	-0.0011053	-3.2091	-0.0013636	424.9127001724938	39.308	1.0729	39.331	38.768	39.84	0.023727					98	29	5	0	0	0	1.0233	1	3310	3310		31.634	3.9903	1	12649000			6655	3040	4193	4210	8256	8256					0.09475831517625011
DGTKAPHPS	9	Unmodified	_DGTKAPHPS_					0	0	0			REV__nc|ENSG00000122507|Q3SYG4-5|BBS9	REV__nc|ENSG00000122507|Q3SYG4-5|BBS9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.2428283691406	2	455.224874	908.435195	-0.4882	-0.00022224	-2.8211	-0.0012842	-3.3093	-0.0015065	455.22543369168693	36.458	0.43279	36.416	36.136	36.569	-0.042458					16	11	3	0	0	0	0.024319	1	2870	2870		39.253	5.0803	1	61751	+		6656	22648	4194	4211	8257	8257					-0.022685491760967125
DGTPLVAAPSL	11	Unmodified	_DGTPLVAAPSL_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7841796875	2	520.784764	1039.55498	0.26776	0.00013944	-1.2734	-0.00066318	-1.0057	-0.00052373	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	1.0238	1	13644	13644		31.53	2.3598	1	6875800			6657	157	4195	4212	8258	8258					0.036780193777985914
DGTPLVAAPSL	11	Unmodified	_DGTPLVAAPSL_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7843017578125	2	520.784764	1039.55498	-0.95638	-0.00049807	-0.21074	-0.00010975	-1.1671	-0.00060781	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	0.99553	1	13258	13258		37.812	0.65241	1	3485700			6658	157	4195	4212	8259	8259					0.036780193777985914
DGVHLGILE	9	Unmodified	_DGVHLGILE_					0	0	0		ENST00000411846.6_1_1:108815923-108880006:+|nuORF	ENST00000411846.6_1_1:108815923-108880006:+|nuORF	ENST00000411846.6_1_1:108815923-108880006:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7582702636719	2	476.758549	951.502546	-0.47199	-0.00022503	-0.90635	-0.00043211	-1.3783	-0.00065714	476.75811604323286	104.24	0.52078	104.11	103.95	104.47	-0.12927					26	16	2	0	0	0	0.94809	1	12977	12977		29.15	0	1	241170			6659	13810	4196	4213	8260	8260					0.0248548103485291
DGVVKRAVAS	10	Unmodified	_DGVVKRAVAS_					0	0	0		ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2898254394531	2	501.290548	1000.56654	-0.32298	-0.00016191	0.75266	0.0003773	0.42968	0.0002154	501.2905862857756	88.352	1.9534	88.181	87.855	89.808	-0.17053					95	46	4	0	0	0	1.0719	1	10780	10780		36.447	0.82846	1	1265500			6660	6627	4197	4214	8261	8261					0.06628261191804086
DGWNLNTAAV	10	Unmodified	_DGWNLNTAAV_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7586059570312	2	530.756538	1059.49852	0.26412	0.00014018	3.6117	0.001917	3.8759	0.0020571	530.7582937272027	96.697	1.061	96.703	96.397	97.458	0.0065079					59	23	4	0	0	0	0.6365	1	12319	12319		72.879	10.772	1	538290			6661	8761	4198	4215	8262	8262					-0.028846084588849408
DGWNLNTAAV	10	Unmodified	_DGWNLNTAAV_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7587890625	2	530.756538	1059.49852	0.84317	0.00044752	2.9919	0.0015879	3.835	0.0020355	530.7579552194014	96.843	1.1537	96.843	96.528	97.682	-3.0518E-05					59	25	3	0	0	0	0.86389	2	12289	12289;12302		56.434	6.9922	1	616190			6662	8761	4198	4215	8263;8264	8263					-0.028846084588849408
DHFKDVMAGL	10	Unmodified	_DHFKDVMAGL_					0	0	0		ENSG00000109511|ENST00000359299|ANXA10	ENSG00000109511|ENST00000359299|ANXA10	ENSG00000109511|ENST00000359299|ANXA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3136596679688	2	566.776416	1131.53828	0.40726	0.00023082	-2.4508	-0.0013891	-2.0435	-0.0011582	566.7739991029322	67.184	1.242	66.936	66.792	68.034	-0.2484					63	29	4	0	0	0	0.03519	1	7796	7796		45.972	8.8131	1	429140			6663	2980	4199	4216	8265	8265					-0.022228047797852923
DHFNDSNLKV	10	Unmodified	_DHFNDSNLKV_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	594.8221435546875	2	594.785827	1187.5571	-1.333	-0.00079286	-2.7623	-0.001643	-4.0954	-0.0024359	595.2852853105481	53.689	0.14589	53.542	53.456	53.602	-0.14723					5	3	2	0	0	0	0.03519	1	5791	5791		33.922	2.3918	1	65325	+		6664	21249	4200	4217	8266	8266					-0.029175518844112958
DHFYNYLRL	9	Unmodified	_DHFYNYLRL_					0	0	0			REV__nc|ENSG00000105146|Q9UQB9-2|AURKC	REV__nc|ENSG00000105146|Q9UQB9-2|AURKC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2100830078125	3	414.208495	1239.60366	0.59866	0.00024797	-1.0293	-0.00042636	-0.43068	-0.00017839	414.20791080175445	20.698	0.44446	20.502	20.187	20.632	-0.19577					12	8	2	0	0	0	0.024466	1	557	557		24.519	3.682	1	14568	+		6665	21498	4201	4218	8267	8267					-0.006560672624573272
DHGGHEDYGH	10	Unmodified	_DHGGHEDYGH_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.2150268554688	2	562.213026	1122.4115	3.2517	0.0018281	1.0018	0.0005632	4.2534	0.0023913	562.213492182052	17.127	0.40317	17.127	16.946	17.349	0					12	8	2	0	0	0	1.1237	1	135	135		23.042	0	1	54384			6666	18010	4202	4219	8268	8268					-0.1448101468056393
DHHCKDTTL	9	Unmodified	_DHHCKDTTL_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.2349243164062	2	535.240198	1068.46584	-0.60103	-0.00032169	-3.2629	-0.0017465	-3.864	-0.0020682	535.2383129575594	67.473	0.50056	67.239	66.97	67.471	-0.23376					16	11	2	0	0	0	0.024495	1	7800	7800		26.693	0	1	230470			6667	10690	4203	4220	8269	8269					-0.06565138853375174
DHHCKDTTL	9	Unmodified	_DHHCKDTTL_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.240198	1068.46584	-0.87356	-0.00046757	-8.1599	-0.0043675	-9.0335	-0.0048351	535.7355495655536	66.909	0.4492	66.909	66.755	67.205	0	-0.16597	-0.0042049	NaN	39.253	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314880			6668	10690	4203	4220							-0.06565138853375174
DHHCKDTTL	9	Unmodified	_DHHCKDTTL_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.240198	1068.46584	-0.72241	-0.00038666	-6.7913	-0.003635	-7.5137	-0.0040216	535.238309281793	67.204	0.4766	66.918	66.794	67.27	-0.28565	-0.15696	-0.0027397	NaN	39.253	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228600			6669	10690	4203	4220							-0.06565138853375174
DHHCKDTTL	9	Unmodified	_DHHCKDTTL_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.240198	1068.46584	-0.69038	-0.00036952	-9.3251	-0.0049911	-10.015	-0.0053607	535.2382233125614	67.011	0.61803	67.035	66.812	67.43	0.023903	-0.040418	-0.0054521	NaN	39.253	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213400			6670	10690	4203	4220							-0.06565138853375174
DHHQLNKYT	9	Unmodified	_DHHQLNKYT_					0	0	0			REV__ENSG00000160194|ENST00000354250|NDUFV3	REV__ENSG00000160194|ENST00000354250|NDUFV3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.2789916992188	2	578.280712	1154.54687	0.057383	3.3183E-05	-2.4947	-0.0014426	-2.4373	-0.0014094	578.2791835847098	108.38	0.34079	108.38	108.18	108.52	0					41	16	3	0	0	0	0.34489	1	13883	13883		69.628	14.905	1	4956200	+		6671	25293	4204	4221	8270	8270					-0.024221148189553787
DHKLLEKE	8	Unmodified	_DHKLLEKE_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2768859863281	2	506.277106	1010.53966	-0.19142	-9.6909E-05	-0.3092	-0.00015654	-0.50062	-0.00025345	506.27691475401133	54.813	0.97548	54.582	54.28	55.255	-0.23087					73	27	4	0	0	0	0.68164	1	5825	5825		68.787	0	1	9503200			6672	3196	4205	4222	8271	8271					0.034811525806162535
DHKNSPIEEF	10	Unmodified	_DHKNSPIEEF_					0	0	0			REV__ENST00000518738.1_1_8:104033398-104053069:+|nuORF	REV__ENST00000518738.1_1_8:104033398-104053069:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7452087402344	3	405.859532	1214.55677	1.5365	0.0006236	-4.0329	-0.0016368	-2.4964	-0.0010132	405.8590334205853	45.474	0.20242	45.518	45.344	45.546	0.043877					7	5	2	0	0	0	0.03519	1	4348	4348		32.751	0	1	66989	+		6673	34241	4206	4223	8272	8272					-0.04192971604265949
DHLESQDPRY	10	Unmodified	_DHLESQDPRY_					0	0	0		ENSG00000114455|ENST00000467761|HHLA2	ENSG00000114455|ENST00000467761|HHLA2	ENSG00000114455|ENST00000467761|HHLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	630.286376953125	2	630.286191	1258.55783	-0.35794	-0.0002256	-0.23172	-0.00014605	-0.58966	-0.00037165	630.2859238972002	74.408	1.0546	74.145	73.889	74.944	-0.26326					55	24	4	0	0	0	0.52982	1	8784	8784		84.916	2.165	1	1944300			6674	3365	4207	4224	8273	8273					-0.06110757235342135
DHLESQDPRY	10	Unmodified	_DHLESQDPRY_					0	0	0		ENSG00000114455|ENST00000467761|HHLA2	ENSG00000114455|ENST00000467761|HHLA2	ENSG00000114455|ENST00000467761|HHLA2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	630.286191	1258.55783	0.33187	0.00020918	-0.8912	-0.00056171	-0.55933	-0.00035254	630.2854508207739	74.25	1.1085	74.067	73.827	74.936	-0.18278	-0.062097	-0.00058562	NaN	84.916	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1994600			6675	3365	4207	4224							-0.06110757235342135
DHLVTWKE	8	Unmodified	_DHLVTWKE_					0	0	0		ENST00000581549.1_1_17:70595217-70599388:-|nuORF	ENST00000581549.1_1_17:70595217-70599388:-|nuORF	ENST00000581549.1_1_17:70595217-70599388:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2721557617188	2	514.263999	1026.51345	-0.42918	-0.00022071	-4.3291	-0.0022263	-4.7583	-0.002447	514.2616423495459	25.986	1.0923	26.066	25.706	26.798	0.08009					63	25	3	0	0	0	0.027866	1	1285	1285		53.351	12.573	1	364820			6676	17167	4208	4225	8274	8274					0.0012488340912568674
DHMVEGSVLL	10	Unmodified	_DHMVEGSVLL_					0	0	0			REV__ENSG00000101544|ENST00000262198|ADNP2	REV__ENSG00000101544|ENST00000262198|ADNP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8449096679688	2	550.276249	1098.53795	0.3932	0.00021637	3.3075	0.00182	3.7007	0.0020364	550.2781766804061	82.409	0.65285	82.189	82	82.652	-0.22015					21	14	2	0	0	0	0.03519	1	9971	9971		21.96	0	1	88546	+		6677	21241	4209	4226	8275	8275					-0.0073822449962790415
DHNWPVLH	8	Unmodified	_DHNWPVLH_					0	0	0			REV__ENSG00000021826|ENST00000233072|CPS1	REV__ENSG00000021826|ENST00000233072|CPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2878723144531	2	509.248683	1016.48281	-0.013315	-6.7807E-06	0.95345	0.00048554	0.94014	0.00047876	509.2491878698246	52.751	0.63047	52.492	52.173	52.803	-0.25838					32	15	3	0	0	0	0.027866	1	5497	5497		57.811	17.239	1	877840	+		6678	19999	4210	4227	8276	8276					-0.024768501852577174
DHPESDDEEN	10	Unmodified	_DHPESDDEEN_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.8016357421875	2	593.710179	1185.4058	-1.2535	-0.00074422	4.2697	0.002535	3.0162	0.0017908	593.7110074756669	35.891	0.16914	35.685	35.616	35.786	-0.20518					5	4	2	0	0	0	0.03519	1	2770	2770		31.53	0	1	119970			6679	3491	4211	4228	8277	8277					-0.17948202773550292
DHPRALPEV	9	Unmodified	_DHPRALPEV_					0	0	0			REV__ENST00000233668.9_1_2:74781546-74781675:+|nuORF	REV__ENST00000233668.9_1_2:74781546-74781675:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2715454101562	2	517.274898	1032.53524	0.55296	0.00028603	-1.0043	-0.0005195	-0.45134	-0.00023347	517.274340702127	85.116	1.0391	85.116	84.628	85.667	0					33	24	2	0	0	0	0.024427	1	10709	10709		26.693	0	1	294960	+		6680	29421	4212	4229	8278	8278					0.02027688157704688
DHQLQARTSC	10	Unmodified	_DHQLQARTSC_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7901000976562	2	579.769654	1157.52475	-0.36253	-0.00021018	-2.9048	-0.0016841	-3.2673	-0.0018943	579.7678309709826	49.269	0.98138	49.168	48.88	49.861	-0.1008					46	25	3	0	0	0	0.03519	1	4969	4969		37.812	5.061	1	1509600			6681	18296	4213	4230	8279	8279					-0.04770662559030825
DHQNGRCAQII	11	Unmodified	_DHQNGRCAQII_					0	0	0			REV__nc|ENSG00000138794|P55212-2|CASP6	REV__nc|ENSG00000138794|P55212-2|CASP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	418.8848876953125	3	418.871777	1253.5935	-0.87166	-0.00036511	3.3143	0.0013883	2.4426	0.0010232	418.87363862305386	37.256	0.66399	37.037	36.686	37.35	-0.2195					43	16	5	0	0	0	0.02478	1	2941	2941		53.597	0	1	242950	+		6682	23903	4214	4231	8280	8280					-0.023149982593167806
DHQVLIKVH	9	Unmodified	_DHQVLIKVH_					0	0	0		nc|ENSG00000116791|Q08257-3|CRYZ;ENSG00000116791|ENST00000340866|CRYZ	nc|ENSG00000116791|Q08257-3|CRYZ	nc|ENSG00000116791|Q08257-3|CRYZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.8157958984375	2	544.81419	1087.61383	2.922	0.0015919	-0.70401	-0.00038355	2.218	0.0012084	544.8140224140072	17.721	0.39379	17.721	17.498	17.892	0					16	7	3	0	0	0	0.92825	1	213	213		30.504	3.7075	1	299300			6683	3578	4215	4232	8281	8281					0.07352540462807156
DHTCRLRQ	8	Unmodified	_DHTCRLRQ_					0	0	0		ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.8423461914062	2	514.75635	1027.49815	1.4176	0.00072971	0.52502	0.00027026	1.9426	0.00099997	514.7565797782248	23.202	1.0992	23.011	22.386	23.485	-0.19117					34	24	2	0	0	0	0.027866	1	933	933		40.573	8.6178	1	44713			6684	16300	4216	4233	8282	8282					-0.014503066596944336
DHTDVHVPVPE	11	Unmodified	_DHTDVHVPVPE_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.2071533203125	3	415.535048	1243.58332	-0.62725	-0.00026065	-3.3798	-0.0014044	-4.0071	-0.0016651	415.5338067260414	36.961	0.67225	36.742	36.365	37.037	-0.2195					29	16	2	0	0	0	0.024734	1	2904	2904		27.644	0	1	104440			6685	4809	4217	4234	8283	8283					-0.028732827129033467
DHTQRPKW	8	Unmodified	_DHTQRPKW_					0	0	0			REV__KDM4B|p.Y60H|1|0.14|ENSG00000127663|chr19:5039872-5039872|T/C|missense_variant	REV__KDM4B|p.Y60H|1|0.14|ENSG00000127663|chr19:5039872-5039872|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2146606445312	2	534.27269	1066.53083	-0.78235	-0.00041799	-1.3703	-0.00073212	-2.1527	-0.0011501	534.2712478147251	29.79	0.21381	29.545	29.44	29.654	-0.24524					6	4	2	0	0	0	0.027866	1	1860	1860		26.796	1.3459	1	43929	+		6686	36177	4218	4235	8284	8284					0.0002222373479980888
DHTRTLQSV	9	Unmodified	_DHTRTLQSV_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7802124023438	2	528.775262	1055.53597	0.0019239	1.0173E-06	3.8179	0.0020188	3.8198	0.0020198	528.7771669065987	49.997	0.56723	49.891	49.635	50.202	-0.10558					36	14	4	0	0	0	0.247	1	5060	5060		82.75	8.4954	1	1079300	+		6687	27166	4219	4236	8285	8285					0.0104248280676984
DHVIASKT	8	Unmodified	_DHVIASKT_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.2691955566406	2	435.737617	869.460681	-0.32905	-0.00014338	3.7853	0.0016494	3.4562	0.001506	435.7394689819324	23.298	0.36596	23.237	22.981	23.347	-0.060862					12	8	2	0	0	0	0.027866	1	891	891		21.96	0	1	33438			6688	5070	4220	4237	8286	8286					0.020729253463287023
DHVLKRKV	8	Unmodified	_DHVLKRKV_					0	0	0			REV__ENSG00000120440|ENST00000239587|TTLL2	REV__ENSG00000120440|ENST00000239587|TTLL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.26251220703125	2	497.811451	993.608348	-0.9524	-0.00047411	3.7232	0.0018534	2.7708	0.0013793	497.8133321922809	56.177	0.6148	55.961	55.78	56.395	-0.21551					30	15	3	0	0	0	0.027866	1	6033	6033		47.916	17.412	1	563630	+		6689	22534	4221	4238	8287	8287					0.11128861670988499
DHVTHSLANL	10	Unmodified	_DHVTHSLANL_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.78271484375	2	553.783087	1105.55162	-0.56725	-0.00031413	-0.29437	-0.00016302	-0.86162	-0.00047715	553.7829629532582	82.654	1.8468	82.681	82.359	84.206	0.026558					60	42	2	0	0	0	0.48123	1	10250	10250		90.37	5.209	1	1228300			6690	653	4222	4239	8288	8288					0.0030676932381084043
DHVYCGIR	8	Unmodified	_DHVYCGIR_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.302490234375	2	481.729269	961.443985	-0.49357	-0.00023777	0.15527	7.4799E-05	-0.3383	-0.00016297	481.7288624356742	73.507	0.50822	73.242	73.017	73.526	-0.26479					25	12	3	0	0	0	0.027866	1	8655	8655		23.042	11.531	1	266600	+		6691	25604	4223	4240	8289	8289					-0.03827898811277919
DHWVRIKY	8	Unmodified	_DHWVRIKY_					0	0	0			REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8005981445312	2	558.801083	1115.58761	-0.10191	-5.6945E-05	-1.2516	-0.00069939	-1.3535	-0.00075633	558.8000245208339	86.82	1.0626	86.683	86.268	87.331	-0.13734					61	24	4	0	0	0	0.94517	1	10528	10528		45.952	1.5748	1	1034200	+		6692	26120	4224	4241	8290	8290					0.03444271291300538
DIAFVLLLGA	10	Unmodified	_DIAFVLLLGA_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7479248046875	2	516.310418	1030.60628	0.022579	1.1658E-05	-2.2816	-0.001178	-2.259	-0.0011663	516.3094638576132	63.845	0.50114	63.652	63.38	63.881	-0.19243					25	12	3	0	0	0	0.03519	1	7206	7206		16.473	0	1	343110			6693	8485	4225	4242	8291	8291					0.0922038814253483
DIALLDALI	9	Unmodified	_DIALLDALI_					0	0	0		ENST00000570511.5_1_16:3293693-3304184:-|nuORF;nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV	ENST00000570511.5_1_16:3293693-3304184:-|nuORF	ENST00000570511.5_1_16:3293693-3304184:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7438049316406	2	478.786776	955.558998	-0.2972	-0.00014229	-2.6988	-0.0012921	-2.996	-0.0014344	478.78532350246286	29.699	0.56946	29.702	29.427	29.997	0.0031357					25	13	2	0	0	0	0.020004	1	1852	1852		71.296	34.137	1	361110			6694	2492	4226	4243	8292	8292					0.0794410887151571
DIALVTEAI	9	Unmodified	_DIALVTEAI_					0	0	0			REV__ENSG00000112079|ENST00000229812|STK38	REV__ENSG00000112079|ENST00000229812|STK38	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.768798828125	2	472.768583	943.522613	0.71085	0.00033607	0.51544	0.00024369	1.2263	0.00057975	472.7683951406541	75.966	0.92979	75.977	75.681	76.611	0.011642					35	23	3	0	0	0	0.64155	1	9285	9285		50.025	2.1089	1	1043400	+		6695	21965	4227	4244	8293	8293					0.04859231974796785
DIAPYDIGGP	10	Unmodified	_DIAPYDIGGP_					0	0	0		ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	509.248015	1016.48148	-0.23395	-0.00011914	4.2222	0.0021502	3.9883	0.002031	509.2502254032345	65.38	1.4549	65.38	64.69	66.145	0					60	39	2	0	0	0	0.03519	1	7788	7788		60.972	0	1	250380			6696	7837	4228	4245	8294	8294					-0.026105290646682988
DIATKRKQY	9	Unmodified	_DIATKRKQY_					0	0	0		ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1;ENSG00000117697|ENST00000366977|NSL1	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2698974609375	2	561.81693	1121.61931	-0.24529	-0.00013781	3.7688	0.0021174	3.5235	0.0019795	561.8195414770224	26.237	0.39172	26.069	25.87	26.262	-0.16816					18	11	2	0	0	0	0.02435	1	1341	1341		42.396	4.5846	1	254320			6697	3655	4229	4246	8295	8295					0.06336219254603748
DIAVLFNII	9	Unmodified	_DIAVLFNII_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2884826660156	2	509.302593	1016.59063	-1.1099	-0.00056529	3.4383	0.0017512	2.3284	0.0011859	509.3040091130548	65.014	0.52244	64.811	64.5	65.023	-0.20254					25	12	3	0	0	0	0.024374	1	7406	7406		49.442	20.292	1	340720			6698	6093	4230	4247	8296	8296					0.08300101625468415
DIAVLFNII	9	Unmodified	_DIAVLFNII_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.302593	1016.59063	-0.56612	-0.00028833	4.1097	0.0020931	3.5436	0.0018047	509.30465303207586	64.527	1.0298	64.527	63.99	65.02	0	-0.19584	0.00076488	NaN	31.53	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437360			6699	6093	4230	4247							0.08300101625468415
DIAVLFNII	9	Unmodified	_DIAVLFNII_					0	0	0		ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	ENST00000534963.5_1_11:61131784-61133703:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.302593	1016.59063	-1.398	-0.00071202	3.9598	0.0020167	2.5618	0.0013047	509.30430552002497	65.007	1.013	64.744	63.976	64.989	-0.2626	0.021452	0.00061221	NaN	31.53	40	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556890			6700	6093	4230	4247							0.08300101625468415
DICITIQNAY	10	Unmodified	_DICITIQNAY_					0	0	0		ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2800903320312	2	577.281531	1152.54851	1.5324	0.00088465	-3.3374	-0.0019266	-1.805	-0.001042	577.279327880754	16.834	0.33245	16.68	16.524	16.857	-0.15376					10	6	3	0	0	0	1.1266	1	115	115		29.17	2.1227	1	39970			6701	4865	4231	4248	8297	8297					-0.021662418452024212
DICITIQNAY	10	Unmodified	_DICITIQNAY_					0	0	0		ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.281531	1152.54851	-0.60141	-0.00034718	-1.5558	-0.00089815	-2.1572	-0.0012453	577.2804662906975	16.802	0.21449	16.594	16.447	16.662	-0.20777	-0.0431	0.00071688	NaN	29.17	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25145			6702	4865	4231	4248							-0.021662418452024212
DICLSLETI	9	Unmodified	_DICLSLETI_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2662048339844	2	503.759901	1005.50525	0.31904	0.00016072	4.2159	0.0021238	4.535	0.0022845	504.2641411813831	71.792	0.44823	71.503	71.313	71.761	-0.28858					14	11	2	0	0	0	0.024205	1	8668	8668		53.351	14.545	1	112000	+		6703	27144	4232	4249	8298	8298					0.002715683775022626
DICLSLETI	9	Unmodified	_DICLSLETI_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.759901	1005.50525	0.24283	0.00012233	6.9156	0.0034838	7.1584	0.0036061	504.26519557161146	71.863	0.51582	71.588	71.394	71.91	-0.2751	0.053647	0.00070855	NaN	53.351	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219260	+		6704	27144	4232	4249							0.002715683775022626
DICLSLETI	9	Unmodified	_DICLSLETI_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.759901	1005.50525	0.14901	7.5066E-05	6.9707	0.0035116	7.1197	0.0035866	503.76323856823717	71.87	0.39836	71.608	71.363	71.761	-0.26199	0.07405	0.00076408	NaN	53.351	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276340	+		6705	27144	4232	4249							0.002715683775022626
DICLSLETI	9	Unmodified	_DICLSLETI_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.759901	1005.50525	-0.00082712	-4.1667E-07	7.2861	0.0036705	7.2853	0.0036701	503.76320911728146	71.723	0.47572	71.517	71.305	71.78	-0.20613	-0.017883	0.0010819	NaN	53.351	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243340	+		6706	27144	4232	4249							0.002715683775022626
DICPRCFPC	9	Unmodified	_DICPRCFPC_					0	0	0		ENST00000296220.5_1_3:125313783-125313900:-|nuORF	ENST00000296220.5_1_3:125313783-125313900:-|nuORF	ENST00000296220.5_1_3:125313783-125313900:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2510986328125	2	527.219365	1052.42418	-0.047399	-2.499E-05	0.62223	0.00032805	0.57483	0.00030306	527.2196325980761	62.06	0.38925	61.803	61.588	61.978	-0.25725					14	9	2	0	0	0	0.024412	1	6963	6963		31.955	1.4512	1	143460			6707	11839	4233	4250	8299	8299					-0.09993734137901811
DIDAGNRLL	9	Unmodified	_DIDAGNRLL_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7667236328125	2	493.766906	985.519259	0.38096	0.0001881	-0.44114	-0.00021782	-0.06018	-2.9715E-05	493.7666354051661	40.674	1.0456	40.674	40.281	41.326	0					55	29	2	0	0	0	0.31247	1	3598	3598		73.975	1.0955	1	4374600	+		6708	36757	4234	4251	8300	8300					0.025919819208070294
DIDECDIVP	9	Unmodified	_DIDECDIVP_					0	0	0		nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1	nc|ENSG00000115380|Q12805-2|EFEMP1	nc|ENSG00000115380|Q12805-2|EFEMP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8185119628906	2	509.723515	1017.43248	-0.22716	-0.00011579	1.9046	0.00097082	1.6774	0.00085504	509.7245186887475	74.881	0.47684	74.881	74.717	75.194	0					19	11	2	0	0	0	0.024436	1	9151	9151		23.042	2.0956	1	173690			6709	3440	4235	4252	8301	8301					-0.07554185415938264
DIDHYLEV	8	Unmodified	_DIDHYLEV_					0	0	0		ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29	ENSG00000137473|ENST00000325106|TTC29	ENSG00000137473|ENST00000325106|TTC29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2744445800781	2	502.24019	1002.46583	-0.46992	-0.00023601	4.3545	0.002187	3.8846	0.001951	502.2424365062492	48.631	0.38223	48.631	48.413	48.795	0					19	10	3	0	0	0	0.027866	1	4963	4963		92.191	1.414	1	91193			6710	5125	4236	4253	8302	8302					-0.03530815581711977
DIDKEKVPK	9	Unmodified	_DIDKEKVPK_					0	0	0			REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3007202148438	2	536.305864	1070.59717	-0.90628	-0.00048604	0.34544	0.00018526	-0.56084	-0.00030078	536.3057934598737	56.718	0.47863	56.816	56.435	56.913	0.097893					20	13	2	0	0	0	0.024344	1	6204	6204		45.972	11.8	1	270330	+		6711	36805	4237	4254	8303	8303					0.06469994786198185
DIDLDFFSV	9	Unmodified	_DIDLDFFSV_					0	0	0		ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.297119140625	2	535.755672	1069.49679	-0.23793	-0.00012747	-0.25259	-0.00013532	-0.49052	-0.0002628	535.7526909593897	57.474	0.48422	57.272	57.064	57.549	-0.20208					23	11	3	0	0	0	0.024523	1	6257	6257		29.15	0	1	369740			6712	1728	4238	4255	8304	8304					-0.03517662267472588
DIDTLAMAVT	10	Unmodified	_DIDTLAMAVT_					0	0	0			REV__ENST00000558282.5_1_15:85734698-85737265:+|nuORF	REV__ENST00000558282.5_1_15:85734698-85737265:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3092651367188	2	525.262807	1048.51106	-0.47874	-0.00025146	0.095948	5.0398E-05	-0.38279	-0.00020107	525.2625374725937	74.491	0.76467	74.501	73.967	74.731	0.0096512					27	17	2	0	0	0	0.03519	1	8966	8966		49.442	13.823	1	138210	+		6713	35094	4239	4256	8305	8305					-0.01125333110826432
DIDVDPILA	9	Unmodified	_DIDVDPILA_					0	0	0			REV__nc|ENSG00000054148|Q9NRX4-2|PHPT1	REV__nc|ENSG00000054148|Q9NRX4-2|PHPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.76666259765625	2	485.758215	969.501877	-0.023976	-1.1647E-05	0.11178	5.4296E-05	0.0878	4.2649E-05	485.75811496833256	72.399	1.2238	72.122	71.828	73.051	-0.2769					78	28	4	0	0	0	0.55828	1	8505	8505		55.504	3.205	1	1278300	+		6714	20185	4240	4257	8306	8306					0.015906415951462805
DIDVKPDRI	9	Unmodified	_DIDVKPDRI_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7981567382812	2	535.795663	1069.57677	-0.38037	-0.0002038	4.4351	0.0023763	4.0547	0.0021725	535.797831978329	89.076	1.1422	88.939	88.607	89.749	-0.13761					73	26	4	0	0	0	0.82115	1	10858	10858		37.812	0.65241	1	1062600	+		6715	22797	4241	4258	8307	8307					0.04476824126390966
DIEDEEWDTWY	11	Unmodified	_DIEDEEWDTWY_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2774353027344	3	500.8649	1499.57287	-0.36532	-0.00018297	-4.0867	-0.0020469	-4.452	-0.0022299	500.86202280627066	60.952	0.14769	61.023	60.947	61.095	0.071125					5	3	2	0	0	0	0.024873	1	6962	6962		6.001	0	1	38938	+		6716	26284	4242	4259	8308	8308					-0.15693354948666638
DIEGDDLIFS	10	Unmodified	_DIEGDDLIFS_					0	0	0			REV__ENSG00000164675|ENST00000324698|IQUB	REV__ENSG00000164675|ENST00000324698|IQUB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.3446655273438	2	562.261319	1122.50808	-0.38252	-0.00021508	-3.951	-0.0022215	-4.3335	-0.0024366	562.2583693468657	60.729	0.52101	60.523	60.213	60.734	-0.20599					21	12	2	0	0	0	0.03519	1	6753	6753		30.318	10.321	1	104820	+		6717	25790	4243	4260	8309	8309					-0.04826884963995326
DIEGDDLIFS	10	Unmodified	_DIEGDDLIFS_					0	0	0			REV__ENSG00000164675|ENST00000324698|IQUB	REV__ENSG00000164675|ENST00000324698|IQUB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	562.261319	1122.50808	-0.90656	-0.00050972	-7.4547	-0.0041915	-8.3612	-0.0047012	562.2559876856577	60.605	0.36105	60.429	60.198	60.559	-0.1761	-0.073038	-0.0015486	NaN	30.318	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68793	+		6718	25790	4243	4260							-0.04826884963995326
DIEILSLTL	9	Unmodified	_DIEILSLTL_					0	0	0		ENST00000295522.3_1_3:190025984-190026023:-|nuORF	ENST00000295522.3_1_3:190025984-190026023:-|nuORF	ENST00000295522.3_1_3:190025984-190026023:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.81610107421875	2	508.79734	1015.58013	0.36768	0.00018708	-3.0536	-0.0015537	-2.6859	-0.0013666	508.79572781930943	102.57	0.85091	102.44	101.9	102.75	-0.12931					31	19	3	0	0	0	0.024405	1	12695	12695		35.618	6.4687	1	300190			6719	11826	4244	4261	8310	8310					0.07296074180374035
DIEPSSLFSK	10	Unmodified	_DIEPSSLFSK_					0	0	0		ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	ENSG00000071575|ENST00000155926|TRIB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2686767578125	2	561.787504	1121.56045	-0.10984	-6.1705E-05	-1.5023	-0.00084398	-1.6122	-0.00090569	562.2860685275166	79.995	0.21193	79.849	79.658	79.87	-0.146					4	2	2	0	0	0	0.03519	1	9552	9552		8.6937	0	1	31022			6720	1456	4245	4262	8311	8311					0.004536981696446674
DIEQQVRR	8	Unmodified	_DIEQQVRR_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant;REV__nc|ENSG00000100197|P10635-2|CYP2D6	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.11181640625	2	522.283254	1042.55196	0.27642	0.00014437	2.6822	0.0014009	2.9586	0.0015452	522.2845383089121	100.88	0.26284	100.74	100.59	100.85	-0.13364					11	7	2	0	0	0	0.027866	1	12507	12507		58.782	5.4305	1	149860	+		6721	28013;21062	4246	4263	8312	8312					0.032381890436681715
DIEQQVRR	8	Unmodified	_DIEQQVRR_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant;REV__nc|ENSG00000100197|P10635-2|CYP2D6	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.283254	1042.55196	-0.49841	-0.00026031	2.9936	0.0015635	2.4952	0.0013032	522.2847896754889	100.87	0.29434	100.87	100.7	100.99	0	0.076981	0.00053418	NaN	58.782	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157340	+		6722	28013;21062	4246	4263							0.032381890436681715
DIEQQVRR	8	Unmodified	_DIEQQVRR_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant;REV__nc|ENSG00000100197|P10635-2|CYP2D6	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.283254	1042.55196	-0.3156	-0.00016483	2.8106	0.0014679	2.495	0.0013031	522.2846545181571	100.81	0.21568	100.82	100.74	100.96	0.0090332	0.029176	0.00034304	NaN	58.782	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119020	+		6723	28013;21062	4246	4263							0.032381890436681715
DIEQQVRR	8	Unmodified	_DIEQQVRR_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant;REV__nc|ENSG00000100197|P10635-2|CYP2D6	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.283254	1042.55196	0.68318	0.00035681	1.6067	0.00083918	2.2899	0.001196	522.2839031944918	100.86	0.28897	100.74	100.6	100.89	-0.12576	-0.05416	-0.00091447	NaN	58.782	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129610	+		6724	28013;21062	4246	4263							0.032381890436681715
DIEQQVRR	8	Unmodified	_DIEQQVRR_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant;REV__nc|ENSG00000100197|P10635-2|CYP2D6	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.283254	1042.55196	0.2161	0.00011287	1.9629	0.0010252	2.179	0.001138	522.2841800716117	100.96	0.25591	100.79	100.66	100.92	-0.17178	-0.0039392	-0.00054247	NaN	58.782	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100380	+		6725	28013;21062	4246	4263							0.032381890436681715
DIETSKISA	9	Unmodified	_DIETSKISA_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2546691894531	2	482.253297	962.492041	-0.61098	-0.00029465	3.266	0.001575	2.655	0.0012804	482.25480944404757	30.739	1.8399	30.561	30.203	32.043	-0.17818					74	44	2	0	0	0	0.6238	1	1990	1990		51.193	1.1682	1	2766200	+		6726	20046	4247	4264	8313	8313					0.00929453589753848
DIEVDEEKS	9	Unmodified	_DIEVDEEKS_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8026733398438	2	532.243126	1062.4717	-1.4737	-0.00078437	-0.39117	-0.0002082	-1.8649	-0.00099257	532.2425317531537	79.619	0.67198	79.447	79.15	79.822	-0.17226					23	15	2	0	0	0	0.024397	1	9835	9835		47.657	12.039	1	111110	+		6727	28172	4248	4265	8314	8314					-0.05703761860695522
DIFDKKEKT	9	Unmodified	_DIFDKKEKT_					0	0	0		ENSG00000055332|ENST00000233057|EIF2AK2;nc|ENSG00000055332|P19525-2|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.3242797851562	2	562.303321	1122.59209	-0.71612	-0.00040268	-3.6872	-0.0020733	-4.4033	-0.002476	562.3016492221709	69.551	0.24895	69.284	69.079	69.327	-0.26725					8	5	2	0	0	0	0.024367	1	8049	8049		44.377	12.847	1	111480			6728	1187	4249	4266	8315	8315					0.035696909235639396
DIFDVKQKF	9	Unmodified	_DIFDVKQKF_					0	0	0			REV__TTC13|p.L310F|1|0.2|ENSG00000143643|chr1:230933832-230933832|C/G|missense_variant	REV__TTC13|p.L310F|1|0.2|ENSG00000143643|chr1:230933832-230933832|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.2890625	2	570.308406	1138.60226	-1.1904	-0.0006789	4.0096	0.0022867	2.8192	0.0016078	570.3105253209757	73.31	0.51921	73.31	73.034	73.553	0					36	13	4	0	0	0	0.024477	1	8975	8975		14.865	0	1	2309900	+		6729	37738	4250	4267	8316	8316					0.03850298648808348
DIFIWEIT	8	Unmodified	_DIFIWEIT_					0	0	0			REV__nc|ENSG00000196811|P07510-2|CHRNG	REV__nc|ENSG00000196811|P07510-2|CHRNG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8158569335938	2	518.771126	1035.5277	0.20495	0.00010632	-3.1907	-0.0016552	-2.9858	-0.0015489	519.2713526384229	69.967	0.70532	69.716	69.358	70.063	-0.25063					21	16	2	0	0	0	0.027866	1	8119	8119		7.6903	0	1	97891	+		6730	28225	4251	4268	8317	8317					0.011355358374203206
DIFKKKAH	8	Unmodified	_DIFKKKAH_					0	0	0		ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7869567871094	2	493.792727	985.5709	-0.1395	-6.8885E-05	-4.4517	-0.0021982	-4.5912	-0.0022671	493.7906156916579	19.616	0.68954	19.455	19.134	19.823	-0.16079					19	13	2	0	0	0	0.027866	1	424	424		76.847	21.342	1	34836			6731	3634	4252	4269	8318	8318					0.07753770405372507
DIFKKLVE	8	Unmodified	_DIFKKLVE_					0	0	0			REV__CON__P09870	REV__CON__P09870	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7688903808594	2	496.294768	990.574983	-0.70685	-0.00035081	1.2372	0.00061403	0.53039	0.00026323	496.29535710033093	81.091	0.52092	81.115	80.89	81.411	0.023911					28	12	3	0	0	0	0.027866	1	10061	10061		34.173	8.7224	1	275880	+	+	6732	19547	4253	4270	8319	8319					0.07931815108440787
DIFRVAIAGAP	11	Unmodified	_DIFRVAIAGAP_					0	0	0		ENST00000560048.2_1_15:65743312-65748006:-|nuORF;nc|ENSG00000074603|Q6V1X1-6|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8	ENST00000560048.2_1_15:65743312-65748006:-|nuORF	ENST00000560048.2_1_15:65743312-65748006:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.8056640625	2	565.321848	1128.62914	-0.62791	-0.00035497	-0.19342	-0.00010934	-0.82133	-0.00046432	565.3213786699436	56.12	0.3849	56.12	55.892	56.277	0					15	10	2	0	0	0	0.024727	1	6267	6267		18.262	0.79408	1	193950			6733	1531	4254	4271	8320	8320					0.0699740725999618
DIFTFVSPQ	9	Unmodified	_DIFTFVSPQ_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2769165039062	2	527.266207	1052.51786	-0.42542	-0.00022431	4.4293	0.0023354	4.0039	0.0021111	527.2683230988599	94.451	0.25022	94.451	94.267	94.518	-0.00023651					8	5	2	0	0	0	0.024427	1	11992	11992		34.173	0	1	30101			6734	977	4255	4272	8321	8321					-0.006296521679587386
DIGAKNIL	8	Unmodified	_DIGAKNIL_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.250244140625	2	422.25036	842.486168	0.11133	4.7011E-05	0.27988	0.00011818	0.39122	0.00016519	422.250345354681	53.291	0.733	53.164	52.874	53.607	-0.12705					42	19	3	0	0	0	0.26064	1	5588	5588		128.86	4.2669	1	1899200			6735	5360	4256	4273	8322	8322					0.05862399868760804
DIGAKNIL	8	Unmodified	_DIGAKNIL_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.250732421875	2	422.25036	842.486168	0.1555	6.5662E-05	0.1785	7.5371E-05	0.334	0.00014103	422.2502933894405	53.526	0.66843	53.267	52.843	53.512	-0.25839					41	17	3	0	0	0	0.26064	1	5611	5611		128.86	4.2669	1	1880100			6736	5360	4256	4273	8323	8323					0.05862399868760804
DIGAKNIL	8	Unmodified	_DIGAKNIL_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.25048828125	2	422.25036	842.486168	0.16072	6.7864E-05	0.12778	5.3954E-05	0.2885	0.00012182	422.2502842880007	53.413	0.74575	53.217	52.935	53.68	-0.19682					37	20	3	0	0	0	0.26064	1	5593	5593		128.86	4.2669	1	1634900			6737	5360	4256	4273	8324	8324					0.05862399868760804
DIGDLEGLL	9	Unmodified	_DIGDLEGLL_					0	0	0			REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.76885986328125	2	472.75039	943.486227	0.73588	0.00034789	0.48955	0.00023144	1.2254	0.00057932	472.75053360946094	75.652	0.58057	75.662	75.47	76.05	0.010376					22	15	2	0	0	0	0.023355	1	9272	9272		55.504	5.4797	1	381620	+		6738	23320	4257	4274	8325	8325					0.012223550781186532
DIGDLEGLL	9	Unmodified	_DIGDLEGLL_					0	0	0			REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.75039	943.486227	0.033494	1.5834E-05	1.5666	0.00074061	1.6001	0.00075644	472.75100551063235	75.905	0.46348	75.66	75.409	75.872	-0.24455	0.0030258	0.00043162	NaN	55.504	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261370	+		6739	23320	4257	4274							0.012223550781186532
DIGHEEGIV	9	Unmodified	_DIGHEEGIV_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000025008	REV__CON__ENSEMBL:ENSBTAP00000025008	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7673645019531	2	484.737814	967.461075	-0.87643	-0.00042484	2.4456	0.0011855	1.5692	0.00076066	484.738461090502	34.932	0.21725	34.982	34.874	35.091	0.050255					8	5	2	0	0	0	0.023596	1	2575	2575		44.117	0	1	55945	+	+	6740	19527	4258	4275	8326	8326					-0.023956997244681588
DIGIWFHIL	9	Unmodified	_DIGIWFHIL_					0	0	0		ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7	ENSG00000146205|ENST00000674324|ANO7	ENSG00000146205|ENST00000674324|ANO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2595825195312	2	557.30821	1112.60187	0.55483	0.00030921	1.8403	0.0010256	2.3951	0.0013348	557.3089795688883	79.643	0.4589	79.396	79.153	79.612	-0.2465					15	10	2	0	0	0	0.024412	1	9531	9531		17.365	0	1	94887			6741	5862	4259	4276	8327	8327					0.050069237196112226
DIGLKNLTK	9	Unmodified	_DIGLKNLTK_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2783203125	2	501.303124	1000.5917	0.70235	0.00035209	-3.296	-0.0016523	-2.5937	-0.0013002	501.30193204740425	79.536	0.7086	79.29	78.987	79.696	-0.2465					31	16	3	0	0	0	0.0242	1	9556	9556		51.193	3.5354	1	110760	+		6742	37256	4260	4277	8328	8328					0.09142315994358796
DIGLKNLTK	9	Unmodified	_DIGLKNLTK_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.303124	1000.5917	0.16682	8.3626E-05	-1.6784	-0.0008414	-1.5116	-0.00075777	501.3021333578929	79.443	0.45867	79.224	79.035	79.494	-0.21923	-0.027104	0.00035456	NaN	51.193	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169330	+		6743	37256	4260	4277							0.09142315994358796
DIGLKNLTK	9	Unmodified	_DIGLKNLTK_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.303124	1000.5917	-0.12178	-6.1049E-05	-1.8916	-0.00094826	-2.0134	-0.0010093	501.30217046522847	79.389	0.42033	79.239	79.067	79.487	-0.15051	-0.011915	0.00014085	NaN	51.193	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129520	+		6744	37256	4260	4277							0.09142315994358796
DIHEGLNRIF	10	Unmodified	_DIHEGLNRIF_					0	0	0			REV__ENSG00000135828|ENST00000367559|RNASEL	REV__ENSG00000135828|ENST00000367559|RNASEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.21881103515625	3	405.21565	1212.62512	1.013	0.00041047	3.2639	0.0013226	4.2769	0.0017331	405.21671023266816	57.166	0.21299	56.964	56.783	56.996	-0.20208					8	5	2	0	0	0	0.03519	1	6226	6226		38.754	27.118	1	179710	+		6745	23583	4261	4278	8329	8329					0.027313177662790622
DIHHKVLSL	9	Unmodified	_DIHHKVLSL_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.3092651367188	2	531.308741	1060.60293	-0.74862	-0.00039775	0.66102	0.0003512	-0.087602	-4.6543E-05	531.3090184026705	38.136	0.91098	37.957	37.665	38.576	-0.17929					95	25	5	0	0	0	0.025498	4	3143	3108;3119;3131;3143		145.16	62.915	1	12121000			6746	5278;17666	4262	4279	8330;8331;8332;8333	8333					0.07505138088527019
DIHHKVLSL	9	Unmodified	_DIHHKVLSL_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3088989257812	2	531.308741	1060.60293	-1.2772	-0.0006786	1.1646	0.00061875	-0.11263	-5.9842E-05	531.3092923721746	38.196	0.85325	37.975	37.686	38.539	-0.22148					84	23	4	0	0	0	0.01896	5	3132	3109;3120;3132;3143;3155		150.36	59.995	1	12190000			6747	5278;17666	4262	4279	8334;8335;8336;8337;8338	8336					0.07505138088527019
DIHHKVLSL	9	Unmodified	_DIHHKVLSL_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.3084716796875	2	531.308741	1060.60293	-0.74755	-0.00039718	0.56637	0.00030092	-0.18119	-9.6265E-05	531.3089643446785	38.221	0.92512	38.003	37.718	38.643	-0.21849					87	25	5	0	0	0	0.025498	4	3124	3103;3113;3124;3136		145.16	62.851	1	11104000			6748	5278;17666	4262	4279	8339;8340;8341;8342	8341					0.07505138088527019
DIHHKVLSL	9	Unmodified	_DIHHKVLSL_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.308741	1060.60293	-1.6479	-0.00087554	2.0593	0.0010941	0.41143	0.0002186	531.3094004358217	38.302	0.45309	38.302	38.102	38.555	0	0.15523	0.001318	NaN	150.36	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312580			6749	5278;17666	4262	4279							0.07505138088527019
DIHHKVLSL	9	Unmodified	_DIHHKVLSL_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.308741	1060.60293	-1.2078	-0.00064174	1.615	0.00085804	0.40711	0.0002163	531.3089819021761	38.257	0.34343	38.175	37.95	38.294	-0.082516	0.027474	0.00084577	NaN	150.36	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246910			6750	5278;17666	4262	4279							0.07505138088527019
DIHHKVLSL	9	Unmodified	_DIHHKVLSL_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.308741	1060.60293	-1.8175	-0.00096567	1.988	0.0010562	0.17046	9.0567E-05	531.3095425982242	38.444	0.35376	38.471	38.298	38.651	0.027279	0.32421	0.0012422	NaN	150.36	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313040			6751	5278;17666	4262	4279							0.07505138088527019
DIHKKMVV	8	Unmodified	_DIHKKMVV_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.281005859375	2	485.281137	968.547722	-0.59313	-0.00028784	0.33044	0.00016036	-0.26269	-0.00012748	485.28124065338966	25.934	0.60036	25.698	25.467	26.067	-0.23603					28	15	2	0	0	0	0.71063	2	1278	1278;1291		66.429	15.094	1	2123000			6752	10611	4263	4280	8343;8344	8343					0.062190082963979876
DIHKKMVV	8	Unmodified	_DIHKKMVV_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2811279296875	2	485.281137	968.547722	-0.21408	-0.00010389	0.27996	0.00013586	0.065878	3.1969E-05	485.2811076077231	25.659	1.1007	25.488	24.825	25.925	-0.17078					62	27	4	0	0	0	0.33369	2	1228	1228;1240		106.42	40.612	1	2033200			6753	10611	4263	4280	8345;8346	8345					0.062190082963979876
DIHKKMVV	8	Unmodified	_DIHKKMVV_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.28094482421875	2	485.281137	968.547722	-0.6232	-0.00030243	0.71229	0.00034566	0.08909	4.3234E-05	485.2812374901608	25.823	0.63611	25.652	25.366	26.002	-0.17023					48	16	5	0	0	0	0.47665	2	1234	1222;1234		87.754	34.389	1	1911100			6754	10611	4263	4280	8347;8348	8348					0.062190082963979876
DIHKKMVV	8	Oxidation (M)	_DIHKKM(Oxidation (M))VV_		DIHKKM(1)VV		DIHKKM(77)VV	0	0	1		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2786560058594	2	493.278595	984.542637	1.1061	0.0005456	-1.0157	-0.00050102	0.090374	4.458E-05	493.27787412812	20.173	1.7642	19.977	19.26	21.024	-0.19577					59	35	4	0	0	0	0.5947	1	505	505		76.774	28.859	1	719150			6755	10611	4263	4281	8349	8349		446			0.049747044337891566
DIHLVRQK	8	Unmodified	_DIHLVRQK_					0	0	0			REV__VN1R4|p.Q214L|1|0.29|ENSG00000228567|chr19:53267025-53267025|T/A|missense_variant	REV__VN1R4|p.Q214L|1|0.29|ENSG00000228567|chr19:53267025-53267025|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.24755859375	2	504.801083	1007.58761	0.24861	0.0001255	-0.37424	-0.00018892	-0.12563	-6.3419E-05	504.80080432797405	20.105	0.43652	19.882	19.631	20.067	-0.22344					12	7	2	0	0	0	0.027866	1	462	462		18.324	0	1	26677	+		6756	37778	4264	4282	8350	8350					0.0841227129131994
DIHLVRQK	8	Unmodified	_DIHLVRQK_					0	0	0			REV__VN1R4|p.Q214L|1|0.29|ENSG00000228567|chr19:53267025-53267025|T/A|missense_variant	REV__VN1R4|p.Q214L|1|0.29|ENSG00000228567|chr19:53267025-53267025|T/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.801083	1007.58761	0.055948	2.8242E-05	-0.00053652	-2.7084E-07	0.055411	2.7972E-05	504.8010278196493	20.018	0.2864	19.85	19.669	19.955	-0.16774	-0.015885	8.996E-05	NaN	30.504	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43724	+		6757	37778	4264	4282							0.0841227129131994
DIHPLNKSL	9	Unmodified	_DIHPLNKSL_					0	0	0		ENSG00000154080|ENST00000618847|CHST9	ENSG00000154080|ENST00000618847|CHST9	ENSG00000154080|ENST00000618847|CHST9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.792724609375	2	518.792924	1035.57129	0.45961	0.00023844	-1.3333	-0.00069172	-0.87371	-0.00045328	518.7922700880588	51.498	1.0039	51.386	51.089	52.093	-0.11232					85	26	5	0	0	0	0.2508	2	5309	5309;5322		82.241	3.9767	1	22487000			6758	6378	4265	4283	8351;8352	8351					0.05493145334571636
DIHQLSFLL	9	Unmodified	_DIHQLSFLL_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.302978515625	2	543.303124	1084.5917	-0.2534	-0.00013767	-0.12115	-6.5822E-05	-0.37455	-0.0002035	543.3030164937979	74.606	1.4697	74.347	74.028	75.498	-0.25887					80	36	4	0	0	0	0.03201	2	9111	9077;9111		139.97	14.156	1	10820000			6759	6959	4266	4284	8353;8354	8354					0.05278315994382865
DIICVSSATI	10	Unmodified	_DIICVSSATI_					0	0	0			REV__ENST00000426077.2_1_2:120979205-120979463:-|nuORF	REV__ENST00000426077.2_1_2:120979205-120979463:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.26275634765625	2	511.26535	1020.51615	0.39184	0.00020033	-3.69	-0.0018866	-3.2982	-0.0016862	511.2632131103268	74.745	1.2608	74.563	74.005	75.266	-0.18279					57	29	4	0	0	0	0.55353	1	8813	8813		82.241	2.5279	1	1186800	+		6760	32266	4267	4285	8355	8355					0.006709707517870811
DIIDEYDLR	9	Unmodified	_DIIDEYDLR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.82373046875	2	576.282586	1150.55062	-0.60217	-0.00034702	-2.8682	-0.0016529	-3.4704	-0.0019999	576.2812440371601	44.997	0.24978	45.041	44.93	45.18	0.04388					9	6	2	0	0	0	0.024457	1	4262	4262		37.159	0	1	82855	+		6761	23044	4268	4286	8356	8356					-0.0186348983577318
DIIFMIDVI	9	Unmodified	_DIIFMIDVI_					0	0	0			REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2945556640625	2	539.796286	1077.57802	-1.0911	-0.00058897	-4.2656	-0.0023026	-5.3567	-0.0028915	539.7937230055172	81.922	1.7448	81.948	81.128	82.873	0.025711					73	41	3	0	0	0	0.024381	1	10022	10022		45.952	1.8352	1	806930	+		6762	27687	4269	4287	8357	8357					0.04233322170921383
DIIGGEAQVRA	11	Unmodified	_DIIGGEAQVRA_					0	0	0		ENST00000412658.5_1_22:24999197-24999317:+|nuORF	ENST00000412658.5_1_22:24999197-24999317:+|nuORF	ENST00000412658.5_1_22:24999197-24999317:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8016967773438	2	564.80402	1127.59349	-0.69156	-0.0003906	-4.3491	-0.0024564	-5.0406	-0.002847	565.3015118390696	32.137	0.84593	32.149	31.823	32.669	0.011795					66	21	5	0	0	0	0.024778	1	2186	2186		44.377	0	1	1656600			6763	13823	4270	4288	8358	8358					0.03479325012312984
DIIHIGMIF	9	Unmodified	_DIIHIGMIF_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2715454101562	2	529.788795	1057.56304	0.30424	0.00016119	3.2322	0.0017124	3.5365	0.0018736	529.7903896837221	88.9	1.0944	88.878	88.652	89.746	-0.021645					36	25	2	0	0	0	0.024293	1	11275	11275		18.324	0	1	482150	+		6764	20736	4271	4289	8359	8359					0.03655875093591021
DIIKKPIAL	9	Unmodified	_DIIKKPIAL_					0	0	0		BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2663879394531	2	505.83406	1009.65357	0.34409	0.00017405	-0.70285	-0.00035552	-0.35876	-0.00018147	505.8336298003277	53.121	0.6982	52.863	52.564	53.262	-0.25838					44	17	3	0	0	0	0.024457	1	5547	5547		29.15	0	1	1347300			6765	176	4272	4290	8360	8360					0.14912667413500458
DIIKKPIAL	9	Unmodified	_DIIKKPIAL_					0	0	0		BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2657775878906	2	505.83406	1009.65357	-0.18396	-9.3053E-05	-0.13192	-6.673E-05	-0.31588	-0.00015978	505.833900550174	53.061	0.80653	52.871	52.551	53.357	-0.18982					58	20	4	0	0	0	0.024457	1	5523	5523		29.15	8.2026	1	1412900			6766	176	4272	4290	8361	8361					0.14912667413500458
DIIKSTHDHW	10	Unmodified	_DIIKSTHDHW_					0	0	0		ENST00000610026.1_1_10:71965926-71969460:-|nuORF;ENSG00000180817|ENST00000373232|PPA1	ENST00000610026.1_1_10:71965926-71969460:-|nuORF	ENST00000610026.1_1_10:71965926-71969460:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.8746337890625	3	417.875405	1250.60439	0.30465	0.00012731	-2.2901	-0.00095697	-1.9854	-0.00082967	417.8744149721561	37.207	0.9715	36.998	36.645	37.616	-0.2092					65	24	3	0	0	0	1.1081	1	2969	2969		31.634	0.56612	1	3816300			6767	9000	4273	4291	8362	8362					-0.010892726133761244
DIISTTHII	9	Unmodified	_DIISTTHII_					0	0	0			REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7841796875	2	506.787307	1011.56006	0.19877	0.00010073	-0.23311	-0.00011814	-0.034339	-1.7403E-05	506.7869472716364	72.841	0.45654	72.851	72.611	73.068	0.0096512					16	10	2	0	0	0	0.024294	1	8812	8812		55.504	6.0627	1	212250	+		6768	32430	4274	4292	8363	8363					0.05474323240423473
DIISTTHII	9	Unmodified	_DIISTTHII_					0	0	0			REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.787307	1011.56006	-0.23335	-0.00011826	-0.89195	-0.00045203	-1.1253	-0.00057029	506.7867175558226	73.224	0.65726	72.948	72.669	73.327	-0.2769	0.049281	-0.00036347	NaN	55.504	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191020	+		6769	32430	4274	4292							0.05474323240423473
DIISTTHII	9	Unmodified	_DIISTTHII_					0	0	0			REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.787307	1011.56006	-0.40443	-0.00020496	-0.66285	-0.00033592	-1.0673	-0.00054088	506.7869158100868	73.161	0.54382	72.897	72.595	73.139	-0.26479	-0.0015385	-0.00013126	NaN	55.504	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255060	+		6770	32430	4274	4292							0.05474323240423473
DIITLYQE	8	Unmodified	_DIITLYQE_					0	0	0			REV__ENST00000588867.1_1_18:21114346-21115663:-|nuORF	REV__ENST00000588867.1_1_18:21114346-21115663:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.7681579589844	2	497.758215	993.501877	0.23557	0.00011726	3.2393	0.0016124	3.4748	0.0017296	497.7604983983821	81.349	0.245	81.155	81.05	81.295	-0.19333					7	5	2	0	0	0	0.027866	1	9793	9793		24.203	0	1	28522	+		6771	24092	4275	4293	8364	8364					0.004866415951369163
DIIVPGLLL	9	Unmodified	_DIIVPGLLL_					0	0	0		SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.8074035644531	2	476.807511	951.600469	0.019887	9.4824E-06	0.3356	0.00016002	0.35548	0.0001695	476.80741843361733	102.5	0.56641	102.37	102.15	102.72	-0.12666					27	12	3	0	0	0	0.55828	1	12763	12763		55.504	0	1	473690			6772	37966	4276	4294	8365	8365					0.12273289630866202
DIKAANVL	8	Unmodified	_DIKAANVL_					0	0	0		nc|ENSG00000115694|O00506-2|STK25;STK25|p.K288*|1|0.2|ENSG00000115694|chr2:241498694-241498695|-/A|frameshift_variant;nc|ENSG00000115694|O00506-3|STK25;ENSG00000115694|ENST00000316586|STK25;ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000134602|ENST00000394334|STK26;nc|ENSG00000134602|Q9P289-3|STK26;nc|ENSG00000134602|Q9P289-2|STK26	nc|ENSG00000115694|O00506-2|STK25;ENSG00000102572|ENST00000539966|STK24;ENSG00000134602|ENST00000394334|STK26	nc|ENSG00000115694|O00506-2|STK25	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.2506408691406	2	422.25036	842.486168	0.51866	0.00021901	0.56142	0.00023706	1.0801	0.00045607	422.25046003506577	50.814	0.8727	50.703	50.416	51.288	-0.11163					54	22	4	0	0	0	0.38451	2	5189	5189;5202		99.375	22.528	1	4066600			6773	18191;2416;4813	4277	4295	8366;8367	8366					0.05862399868760804
DIKAANVL	8	Unmodified	_DIKAANVL_					0	0	0		nc|ENSG00000115694|O00506-2|STK25;STK25|p.K288*|1|0.2|ENSG00000115694|chr2:241498694-241498695|-/A|frameshift_variant;nc|ENSG00000115694|O00506-3|STK25;ENSG00000115694|ENST00000316586|STK25;ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000134602|ENST00000394334|STK26;nc|ENSG00000134602|Q9P289-3|STK26;nc|ENSG00000134602|Q9P289-2|STK26	nc|ENSG00000115694|O00506-2|STK25;ENSG00000102572|ENST00000539966|STK24;ENSG00000134602|ENST00000394334|STK26	nc|ENSG00000115694|O00506-2|STK25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.25067138671875	2	422.25036	842.486168	0.43314	0.00018289	0.47626	0.0002011	0.9094	0.00038399	422.2503451266023	50.997	1.132	50.72	50.299	51.431	-0.27643					67	29	4	0	0	0	0.42912	2	5207	5207;5219		93.195	21.9	1	4015800			6774	18191;2416;4813	4277	4295	8368;8369	8368					0.05862399868760804
DIKAANVL	8	Unmodified	_DIKAANVL_					0	0	0		nc|ENSG00000115694|O00506-2|STK25;STK25|p.K288*|1|0.2|ENSG00000115694|chr2:241498694-241498695|-/A|frameshift_variant;nc|ENSG00000115694|O00506-3|STK25;ENSG00000115694|ENST00000316586|STK25;ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000134602|ENST00000394334|STK26;nc|ENSG00000134602|Q9P289-3|STK26;nc|ENSG00000134602|Q9P289-2|STK26	nc|ENSG00000115694|O00506-2|STK25;ENSG00000102572|ENST00000539966|STK24;ENSG00000134602|ENST00000394334|STK26	nc|ENSG00000115694|O00506-2|STK25	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	422.25036	842.486168	0.84227	0.00035565	-0.30797	-0.00013004	0.5343	0.00022561	422.25007595568616	50.895	0.83113	50.714	50.39	51.222	-0.18071	0.0017387	-0.00041703	NaN	99.375	56	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3358900			6775	18191;2416;4813	4277	4295							0.05862399868760804
DIKDTRKPT	9	Unmodified	_DIKDTRKPT_					0	0	0		ENSG00000103091|ENST00000262144|WDR59;nc|ENSG00000103091|Q6PJI9-2|WDR59;WDR59|p.Q650Pfs*23|1|0.33|ENSG00000103091|chr16:74893732-74893733|-/A|frameshift_variant	ENSG00000103091|ENST00000262144|WDR59	ENSG00000103091|ENST00000262144|WDR59	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2442626953125	2	537.301113	1072.58767	-0.18891	-0.0001015	3.1477	0.0016912	2.9587	0.0015897	537.3028447790206	55.868	0.46133	55.868	55.573	56.035	0					27	12	3	0	0	0	0.024025	1	6164	6164		62.107	0	1	956820			6776	2468	4278	4296	8370	8370					0.05428226500657729
DIKEKALI	8	Unmodified	_DIKEKALI_					0	0	0		ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.315185546875	2	465.286943	928.559333	0.15011	6.9845E-05	-0.33051	-0.00015378	-0.1804	-8.3938E-05	465.2866364801306	47.879	0.55992	47.693	47.526	48.086	-0.18684					18	14	2	0	0	0	0.027866	1	4704	4704		44.117	12.162	1	177160			6777	10818	4279	4297	8371	8371					0.09219528591370363
DIKFVAPI	8	Unmodified	_DIKFVAPI_					0	0	0			REV__CON__P02754	REV__CON__P02754	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.76885986328125	2	451.770929	901.527304	-0.59801	-0.00027016	-4.0254	-0.0018186	-4.6235	-0.0020887	451.769088727356	27.362	0.95968	27.194	26.809	27.768	-0.16816					58	22	4	0	0	0	0.97924	1	1524	1524		40.573	1.7665	1	3938000	+	+	6778	19541	4280	4298	8372	8372					0.07260160908231228
DIKKGNTL	8	Unmodified	_DIKKGNTL_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.7613220214844	2	444.761092	887.507631	0.012584	5.5969E-06	-0.28381	-0.00012623	-0.27123	-0.00012063	444.7609804139507	24.103	0.95199	23.887	23.554	24.506	-0.2151					56	21	4	0	0	0	0.47665	1	1018	1018		87.754	2.3948	1	5935600			6779	6834	4281	4299	8373	8373					0.05937784897491838
DIKKGNTL	8	Unmodified	_DIKKGNTL_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.7612609863281	2	444.761092	887.507631	-0.22439	-9.9799E-05	-0.059642	-2.6526E-05	-0.28403	-0.00012633	444.7610742859798	23.909	1.2509	23.729	23.477	24.728	-0.17989					54	28	4	0	0	0	0.47665	1	981	981		87.754	2.3948	1	5389400			6780	6834	4281	4299	8374	8374					0.05937784897491838
DIKKKVIA	8	Unmodified	_DIKKKVIA_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MSMS	OPSCC_40_ClassI_Rep-1	4	457.80517578125	2	457.805303	913.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.111	1	22.909	22.409	23.409	-0.20193								0	0	0	0.4514	1	886	886		60.294	15.763	1				6781	3693	4282	4300	8375	8375					0.13579825207932572
DIKKKVIA	8	Unmodified	_DIKKKVIA_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MSMS	OPSCC_40_ClassI_Rep-1	4	457.8050842285156	2	457.805303	913.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.205	1	23.003	22.503	23.503	-0.20193								0	0	0	0.3462	1	898	898		73.975	26.059	1				6782	3693	4282	4300	8376	8376					0.13579825207932572
DIKKKVIA	8	Unmodified	_DIKKKVIA_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.804931640625	2	457.805303	913.596052	-0.4582	-0.00020977	-0.02629	-1.2036E-05	-0.48449	-0.0002218	457.80510503900206	23.104	0.83019	22.921	22.602	23.432	-0.18319					38	18	4	0	0	0	0.81662	1	888	888		57.811	2.3071	1	880610			6783	3693	4282	4300	8377	8377					0.13579825207932572
DIKKLLPD	8	Unmodified	_DIKKLLPD_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.31585693359375	2	471.286943	940.559333	0.011291	5.3213E-06	-0.31553	-0.0001487	-0.30423	-0.00014338	471.2867863809938	56.751	0.91885	56.584	56.082	57.001	-0.1672					45	23	3	0	0	0	0.027866	1	6107	6107		102.77	20.468	1	689060			6784	1060	4283	4301	8378	8378					0.0866752859137705
DIKKLLPD	8	Unmodified	_DIKKLLPD_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.3153991699219	2	471.286943	940.559333	0.26182	0.00012339	-0.31835	-0.00015004	-0.056531	-2.6642E-05	471.2866785225296	56.176	0.4893	55.96	55.668	56.157	-0.21607					23	12	2	0	0	0	0.027866	1	6081	6081		102.77	8.7669	1	288980			6785	1060	4283	4301	8379	8379					0.0866752859137705
DIKKLLPD	8	Unmodified	_DIKKLLPD_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.3155822753906	2	471.286943	940.559333	0.41004	0.00019325	-0.63408	-0.00029883	-0.22404	-0.00010559	471.2865593409033	56.813	0.71985	56.611	56.171	56.891	-0.20209					42	18	3	0	0	0	0.027866	1	6105	6105		115.46	21.453	1	782370			6786	1060	4283	4301	8380	8380					0.0866752859137705
DIKKLLPD	8	Unmodified	_DIKKLLPD_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.315673828125	2	471.286943	940.559333	0.076746	3.617E-05	-0.42639	-0.00020095	-0.34964	-0.00016478	471.28664577446267	56.833	0.73434	56.608	56.189	56.923	-0.2248					45	18	3	0	0	0	0.027866	1	6106	6106		85.359	29.855	1	711480			6787	1060	4283	4301	8381	8381					0.0866752859137705
DIKKLLPD	8	Unmodified	_DIKKLLPD_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.3152160644531	2	471.286943	940.559333	-1.044	-0.00049204	1.3689	0.00064517	0.32492	0.00015313	471.2874397682585	56.2	0.52979	55.984	55.709	56.239	-0.21551					29	13	3	0	0	0	0.027866	1	6070	6070		93.195	0	1	441290			6788	1060	4283	4301	8382	8382					0.0866752859137705
DIKKSVKL	8	Unmodified	_DIKKSVKL_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.802978515625	2	465.80276	929.590967	-1.2986	-0.0006049	1.315	0.00061255	0.016412	7.6447E-06	465.8032286367304	28.916	0.86671	28.671	28.363	29.229	-0.24523					46	19	4	0	0	0	0.53523	2	1735	1724;1735		82.305	2.854	1	1208200			6789	3602	4284	4302	8383;8384	8384					0.12335521345323741
DIKRLFAKP	9	Unmodified	_DIKRLFAKP_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2822875976562	2	544.334759	1086.65496	0.63905	0.00034786	-1.5178	-0.00082618	-0.87873	-0.00047832	544.3339045148734	51.221	0.2755	51.11	50.973	51.249	-0.11163					11	6	2	0	0	0	0.024288	1	5267	5267		44.377	7.9304	1	128230	+		6790	29143	4285	4303	8385	8385					0.11510301502289622
DIKSDSILL	9	Unmodified	_DIKSDSILL_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;ENSG00000101349|ENST00000353224|PAK5	nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000101349|ENST00000353224|PAK5	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30908203125	2	502.28714	1002.55973	0.44767	0.00022486	0.21073	0.00010585	0.6584	0.00033071	502.2870946088902	21.883	0.52515	21.705	21.35	21.875	-0.17721					21	10	3	0	0	0	0.024344	1	685	685		54.776	17.617	1	104810			6791	5168;2314	4286	4304	8386	8386					0.058549035205942346
DIKSDSILL	9	Unmodified	_DIKSDSILL_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;ENSG00000101349|ENST00000353224|PAK5	nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000101349|ENST00000353224|PAK5	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.28714	1002.55973	-0.42486	-0.0002134	0.60254	0.00030265	0.17768	8.9249E-05	502.28729568668405	22.029	0.52503	21.838	21.564	22.089	-0.19072	0.063475	-0.00015341	NaN	54.776	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95534			6792	5168;2314	4286	4304							0.058549035205942346
DIKSDSILL	9	Unmodified	_DIKSDSILL_					0	0	0		nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6;nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;ENSG00000101349|ENST00000353224|PAK5	nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000101349|ENST00000353224|PAK5	nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.28714	1002.55973	-0.86501	-0.00043448	1.5189	0.00076291	0.65387	0.00032843	502.2877218853316	21.983	0.53074	21.781	21.517	22.048	-0.20199	0.0059292	0.00076711	NaN	54.776	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106120			6793	5168;2314	4286	4304							0.058549035205942346
DIKSHYAF	8	Unmodified	_DIKSHYAF_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.7451477050781	2	490.745442	979.476331	-0.54175	-0.00026586	0.27434	0.00013463	-0.26741	-0.00013123	490.745449020658	42.536	1.2351	42.413	42.076	43.311	-0.12299					79	32	4	0	0	0	0.27053	3	3845	3833;3845;3858		124.59	39.679	1	5931200			6794	9403	4287	4305	8387;8388;8389	8388					-0.014227881366196016
DIKSHYAF	8	Unmodified	_DIKSHYAF_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7452392578125	2	490.745442	979.476331	-0.23993	-0.00011774	-0.033362	-1.6372E-05	-0.27329	-0.00013412	490.74532285504904	42.668	1.0248	42.437	42.042	43.067	-0.23186					78	26	4	0	0	0	0.2822	3	3855	3844;3855;3868		119.56	37.628	1	5757800			6795	9403	4287	4305	8390;8391;8392	8391					-0.014227881366196016
DIKSHYAF	8	Unmodified	_DIKSHYAF_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.74493408203125	2	490.745442	979.476331	-0.24472	-0.00012009	-0.030651	-1.5042E-05	-0.27537	-0.00013514	490.74525929589083	42.705	1.0979	42.479	42.035	43.133	-0.22597					80	28	4	0	0	0	0.38451	3	3844	3844;3855;3869		99.375	19.924	1	4959800			6796	9403	4287	4305	8393;8394;8395	8393					-0.014227881366196016
DIKSIVSSL	9	Unmodified	_DIKSIVSSL_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29766845703125	2	481.281857	960.549162	2.2521	0.0010839	-0.88636	-0.00042659	1.3658	0.00065731	481.2812477560892	19.137	0.64302	18.903	18.682	19.325	-0.23345					23	12	3	0	0	0	0.024263	1	375	375		71.296	21.854	1	109370	+		6797	25091	4288	4306	8396	8396					0.06730920866152701
DIKSKIRAL	9	Unmodified	_DIKSKIRAL_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.3323974609375	2	522.332216	1042.64988	-0.67088	-0.00035042	0.25864	0.0001351	-0.41223	-0.00021532	522.3321640914129	39.426	0.87237	39.262	38.934	39.806	-0.16459					63	22	5	0	0	0	0.10174	2	3344	3344;3355		110.12	38.824	1	2483000			6798	8059	4289	4307	8397;8398	8397					0.13025997639647358
DIKSKIRAL	9	Unmodified	_DIKSKIRAL_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.3323364257812	2	522.332216	1042.64988	-0.25932	-0.00013545	-0.45421	-0.00023725	-0.71353	-0.0003727	522.331619393972	39.548	0.69907	39.325	38.999	39.698	-0.22311					57	17	5	0	0	0	0.2508	2	3355	3355;3366		82.241	21.269	1	2430200			6799	8059	4289	4307	8399;8400	8399					0.13025997639647358
DIKSLEKYII	10	Unmodified	_DIKSLEKYII_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3523559570312	2	611.358096	1220.70164	-2.7988	-0.0017111	-0.66999	-0.00040961	-3.4688	-0.0021207	611.3575286656617	92.522	1.7327	92.379	91.617	93.35	-0.14356					150	40	4	0	0	0	1.1265	1	11439	11439		24.519	0.99649	1	4645400			6800	9849	4290	4308	8401	8401					0.1001169654291516
DIKSVIKGL	9	Unmodified	_DIKSVIKGL_					0	0	0			REV__nc|ENSG00000128595|O43852-9|CALU	REV__nc|ENSG00000128595|O43852-9|CALU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2572021484375	2	486.808042	971.601532	-0.22554	-0.00010979	0.012809	6.2353E-06	-0.21273	-0.00010356	486.80780006877893	25.643	0.54984	25.723	25.459	26.008	0.08009					22	12	3	0	0	0	0.024344	1	1163	1163		45.972	11.8	1	296660	+		6801	22998	4291	4309	8402	8402					0.11459503999765275
DIKTINHK	8	Unmodified	_DIKTINHK_					0	0	0		nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B	nc|ENSG00000180777|Q9BXX2-2|ANKRD30B	nc|ENSG00000180777|Q9BXX2-2|ANKRD30B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3126220703125	2	484.779816	967.545079	-0.92206	-0.000447	0.15492	7.51E-05	-0.76715	-0.0003719	484.7800164320251	44.565	0.96575	44.565	44.215	45.181	0					48	27	3	0	0	0	0.027866	1	4215	4215		58.782	11.125	1	2182100			6802	8996	4292	4310	8403	8403					0.06000876163091107
DILAKTSAK	9	Unmodified	_DILAKTSAK_					0	0	0		ENST00000547751.5_1_12:45059243-45269664:-|nuORF;nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2	ENST00000547751.5_1_12:45059243-45269664:-|nuORF	ENST00000547751.5_1_12:45059243-45269664:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.25341796875	2	473.782025	945.549496	-0.35823	-0.00016973	1.739	0.0008239	1.3808	0.00065417	473.78298305486686	30.671	0.57687	30.671	30.343	30.92	0					20	13	2	0	0	0	0.024288	1	1968	1968		62.107	1.1355	1	60762			6803	9356	4293	4311	8404	8404					0.07454340586002672
DILGLSYL	8	Unmodified	_DILGLSYL_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.7615966796875	2	447.252569	892.490584	-0.20093	-8.9867E-05	-2.7777	-0.0012423	-2.9786	-0.0013322	447.25119851886586	25.167	0.92955	24.996	24.692	25.621	-0.17078					28	21	2	0	0	0	0.027866	1	1201	1201		19.36	0	1	374750	+		6804	22000	4294	4312	8405	8405					0.040038642916556455
DILHPPEVE	9	Unmodified	_DILHPPEVE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8365478515625	2	524.769114	1047.52368	-0.46051	-0.00024166	4.1249	0.0021646	3.6644	0.001923	524.7708776663053	61.23	0.51856	61.017	60.719	61.238	-0.2134					29	13	3	0	0	0	0.023596	1	7002	7002		53.351	0	1	362290			6805	6479	4295	4313	8406	8406					0.0018144634370855783
DILIKGVLL	9	Unmodified	_DILIKGVLL_					0	0	0			REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.30645751953125	2	492.328611	982.642668	0.20124	9.9076E-05	-0.26438	-0.00013016	-0.063144	-3.1088E-05	492.3284962283608	69.668	0.32797	69.417	69.196	69.524	-0.25063					11	7	2	0	0	0	0.024535	1	8074	8074		18.324	0	1	99124	+		6806	25120	4296	4314	8407	8407					0.1506526503923169
DILKRLYEL	9	Unmodified	_DILKRLYEL_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.8449096679688	2	581.845156	1161.67576	-1.0386	-0.0006043	0.53228	0.00030971	-0.50632	-0.0002946	581.8453101301108	68.868	0.95107	68.606	68.26	69.211	-0.26166					57	22	4	0	0	0	0.17845	3	7978	7955;7966;7978		93.143	40.207	1	3178200			6807	2776	4297	4315	8408;8409;8410	8410					0.10138847091275238
DILKRLYEL	9	Unmodified	_DILKRLYEL_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.8444213867188	2	581.845156	1161.67576	-0.43303	-0.00025196	-0.1694	-9.8563E-05	-0.60243	-0.00035052	581.844949758247	68.814	1.0574	68.572	68.227	69.284	-0.24277					66	25	4	0	0	0	0.12914	2	7979	7966;7979		104.06	31.036	1	3181700			6808	2776	4297	4315	8411;8412	8412					0.10138847091275238
DILKRLYEL	9	Unmodified	_DILKRLYEL_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.8447265625	2	581.845156	1161.67576	-0.3443	-0.00020033	-0.23873	-0.0001389	-0.58303	-0.00033923	581.8448974174731	68.771	0.98315	68.541	68.275	69.258	-0.23048					63	23	4	0	0	0	0.025498	4	7962	7939;7950;7962;7976		145.16	51.96	1	2973400			6809	2776	4297	4315	8413;8414;8415;8416	8415					0.10138847091275238
DILKSGHLY	9	Unmodified	_DILKSGHLY_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7;ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.75830078125	2	523.287474	1044.5604	-0.4212	-0.00022041	-2.3794	-0.0012451	-2.8006	-0.0014655	523.788395961205	41.485	0.19615	41.255	41.157	41.354	-0.23029					6	4	2	0	0	0	0.024436	1	3640	3640		38.806	21.338	1	77136			6810	1991;16803	4298	4316	8417	8417					0.039897429602888224
DILKSGHLY	9	Unmodified	_DILKSGHLY_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7;ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.287474	1044.5604	0.022247	1.1642E-05	-5.23	-0.0027368	-5.2077	-0.0027251	523.2852407798152	41.269	0.31485	41.146	40.98	41.294	-0.12317	-0.050224	-0.0019818	NaN	30.504	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116660			6811	1991;16803	4298	4316							0.039897429602888224
DILKSGHLY	9	Unmodified	_DILKSGHLY_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7;ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.287474	1044.5604	-0.07311	-3.8257E-05	-1.2589	-0.00065877	-1.332	-0.00069702	523.2855994743181	41.164	0.42315	41.187	41.005	41.429	0.023003	-0.0086448	0.0021742	NaN	30.504	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136230			6812	1991;16803	4298	4316							0.039897429602888224
DILLAKSN	8	Unmodified	_DILLAKSN_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2560119628906	2	437.255643	872.496732	0.6316	0.00027617	-0.59093	-0.00025839	0.040675	1.7785E-05	437.25525846675504	47.774	0.62202	47.588	47.318	47.94	-0.18684					40	16	4	0	0	0	0.85395	1	4693	4693		54.776	1.4249	1	1792500			6813	9199	4299	4317	8418	8418					0.05538382523184282
DILLRPEL	8	Unmodified	_DILLRPEL_					0	0	0		nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3;CYB5R3|p.E224K|1|0.29|ENSG00000100243|chr22:42623852-42623852|C/T|missense_variant;ENST00000470741.1_1_22:43015781-43027088:-|nuORF	nc|ENSG00000100243|P00387-2|CYB5R3	nc|ENSG00000100243|P00387-2|CYB5R3	MSMS	OPSCC_40_ClassI_Rep-1	4	484.7926330566406	2	484.792392	967.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.027	1	70.755	70.255	71.255	-0.27185								0	0	0	0.34072	1	8279	8279		87.696	13.441	1				6814	2159	4300	4318	8419	8419					0.08514930965668555
DILLRPEL	8	Unmodified	_DILLRPEL_					0	0	0		nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3;CYB5R3|p.E224K|1|0.29|ENSG00000100243|chr22:42623852-42623852|C/T|missense_variant;ENST00000470741.1_1_22:43015781-43027088:-|nuORF	nc|ENSG00000100243|P00387-2|CYB5R3	nc|ENSG00000100243|P00387-2|CYB5R3	MSMS	OPSCC_40_ClassI_Rep-2	5	484.79248046875	2	484.792392	967.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.961	1	70.704	70.204	71.204	-0.25713								0	0	0	0.34404	1	8282	8282		74.255	5.4682	1				6815	2159	4300	4318	8420	8420					0.08514930965668555
DILQLVIVE	9	Unmodified	_DILQLVIVE_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3299560546875	2	521.313158	1040.61176	-0.51935	-0.00027075	0.76849	0.00040063	0.24914	0.00012988	521.3133735687138	69.758	0.4082	69.771	69.544	69.952	0.012421					14	9	2	0	0	0	0.023274	1	8328	8328		77.318	31.366	1	177710			6816	4330	4301	4319	8421	8421					0.09308066934318049
DILRGQQI	8	Unmodified	_DILRGQQI_					0	0	0			REV__nc|ENSG00000102038|P28370-2|SMARCA1	REV__nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.246337890625	2	471.771991	941.529429	0.1335	6.2981E-05	-3.6807	-0.0017365	-3.5472	-0.0016735	471.771557127419	22.394	0.60703	22.394	22.012	22.619	0					19	12	2	0	0	0	0.027866	1	769	769		53.351	0	1	110330	+		6817	21280	4302	4320	8422	8422					0.05632589646052111
DILRSLVNI	9	Unmodified	_DILRSLVNI_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2451782226562	2	521.816399	1041.61824	-1.0453	-0.00054543	-0.16508	-8.6139E-05	-1.2103	-0.00063157	521.8162222912067	50.402	0.39932	50.402	50.178	50.577	0					23	11	3	0	0	0	0.024288	1	5301	5301		71.877	13.096	1	463840			6818	10155	4303	4321	8423	8423					0.09910004885705348
DILSNVHDT	9	Unmodified	_DILSNVHDT_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.74530029296875	2	507.248546	1012.48254	-0.38837	-0.000197	-1.6761	-0.00085022	-2.0645	-0.0010472	507.24749265190735	81.969	0.86153	81.995	81.454	82.315	0.025711					31	20	2	0	0	0	0.023239	1	10135	10135		64.207	0	1	658030	+		6819	24948	4304	4322	8424	8424					-0.023203146957712306
DILSQLVN	8	Unmodified	_DILSQLVN_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3;ENST00000470210.1_1_13:77589514-77592857:-|nuORF;nc|ENSG00000164616|Q9UKT6|FBXL21P	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7789306640625	2	451.2531	900.491647	-0.1563	-7.0531E-05	-0.17384	-7.8447E-05	-0.33014	-0.00014898	451.2527533577833	30.428	0.71942	30.184	29.905	30.624	-0.24415					23	16	2	0	0	0	0.027866	1	1973	1973		129.68	14.224	1	76554			6820	775	4305	4323	8425	8425					0.03742078660570769
DILSQLVN	8	Unmodified	_DILSQLVN_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3;ENST00000470210.1_1_13:77589514-77592857:-|nuORF;nc|ENSG00000164616|Q9UKT6|FBXL21P	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.2531	900.491647	-0.89505	-0.00040389	3.0285	0.0013666	2.1335	0.00096273	451.25382705471037	30.246	0.45132	30.246	30.057	30.508	0	0.030346	0.0016025	NaN	129.68	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56570			6821	775	4305	4323							0.03742078660570769
DILTLSFSY	9	Unmodified	_DILTLSFSY_					0	0	0			REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2535400390625	2	529.773865	1057.53318	-0.16399	-8.6878E-05	-3.7292	-0.0019756	-3.8932	-0.0020625	529.7721756490588	38.691	0.42578	38.465	38.21	38.636	-0.2257					18	10	2	0	0	0	0.024205	1	3187	3187		44.117	8.4985	1	121780	+		6822	36493	4306	4324	8426	8426					0.006712146292329635
DILVKGNEI	9	Unmodified	_DILVKGNEI_					0	0	0		ENST00000555284.1_1_14:81736911-81745120:-|nuORF;nc|ENSG00000140022|Q8WXE9|STON2;nc|ENSG00000140022|Q8WXE9-3|STON2;ENSG00000140022|ENST00000614646|STON2	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.75433349609375	2	500.787307	999.560061	-0.72747	-0.00036431	-0.47913	-0.00023994	-1.2066	-0.00060425	500.78694894194365	69.242	0.20872	68.98	68.875	69.084	-0.26166					6	4	2	0	0	0	0.023454	1	8022	8022		71.877	0	1	401730			6823	5387	4307	4325	8427	8427					0.060263232404167866
DILVSKVSI	9	Unmodified	_DILVSKVSI_					0	0	0		ENST00000494190.1_1_2:100013292-100015462:+|nuORF	ENST00000494190.1_1_2:100013292-100015462:+|nuORF	ENST00000494190.1_1_2:100013292-100015462:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2540588378906	2	487.30005	972.585547	-1.3033	-0.00063509	1.6275	0.0007931	0.32426	0.00015801	487.30077135234455	65.066	1.4291	64.803	64.532	65.961	-0.2626					57	38	2	0	0	0	0.023239	1	7623	7623		84.916	26.134	1	1051100			6824	15522	4308	4326	8428	8428					0.09815797762848888
DILWESLML	9	Unmodified	_DILWESLML_					0	0	0			REV__ENSG00000169371|ENST00000308588|SNUPN	REV__ENSG00000169371|ENST00000308588|SNUPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3097534179688	2	560.291368	1118.56818	0.060774	3.4051E-05	-0.77459	-0.000434	-0.71382	-0.00039995	560.7919297235785	51.28	1.0563	51.28	50.479	51.535	0					60	29	4	0	0	0	0.024477	1	5449	5449		35.618	22.164	1	480810	+		6825	26360	4309	4327	8429	8429					0.013641341655329597
DIMAAVVPKI	10	Unmodified	_DIMAAVVPKI_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2841186523438	2	528.809728	1055.6049	0.81826	0.0004327	0.74236	0.00039257	1.5606	0.00082527	528.8073562577174	87.462	1.6154	87.483	86.927	88.543	0.021263					126	38	6	0	0	0	0.03519	1	10888	10888		76.774	0	1	1231100			6826	9764	4310	4328	8430	8430					0.07932430782102529
DIMERNQHLAE	11	Unmodified	_DIMERNQHLAE_					0	0	0			REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.25787353515625	3	452.550593	1354.62995	-0.44194	-0.0002	-1.6074	-0.00072745	-2.0494	-0.00092745	452.5492454737924	44.963	0.56723	44.71	44.59	45.157	-0.25252					17	14	2	0	0	0	0.024789	1	4254	4254		26.75	13.792	1	73068	+		6827	22089	4311	4329	8431	8431					-0.03318166153258062
DIMFEHFF	8	Unmodified	_DIMFEHFF_					0	0	0		nc|ENSG00000167633|P43629-2|KIR3DL1;ENSG00000167633|ENST00000391728|KIR3DL1	nc|ENSG00000167633|P43629-2|KIR3DL1	nc|ENSG00000167633|P43629-2|KIR3DL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8239135742188	2	543.241678	1084.4688	-0.68549	-0.00037239	-0.4851	-0.00026353	-1.1706	-0.00063591	543.2413256759758	67.277	0.36017	67.301	67.152	67.513	0.023911					11	8	2	0	0	0	0.027866	1	7928	7928		14.664	0	1	57417			6828	7711	4312	4330	8432	8432					-0.07005263728547106
DIMLQLFDV	9	Unmodified	_DIMLQLFDV_					0	0	0			REV__ENSG00000160870|ENST00000336374|CYP3A7	REV__ENSG00000160870|ENST00000336374|CYP3A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.299072265625	2	547.283543	1092.55253	-0.98194	-0.0005374	3.9095	0.0021396	2.9276	0.0016022	547.2855785997285	80.754	0.4383	80.754	80.5	80.939	0					15	10	2	0	0	0	0.024319	1	10020	10020		47.657	6.8792	1	104670	+		6829	25355	4313	4331	8433	8433					0.009958476484825951
DIMTHDSRDLF	11	Unmodified	_DIMTHDSRDLF_					0	0	0			REV__COL5A1|p.P197T|1|0.32|ENSG00000130635|chr9:134701268-134701268|C/A|missense_variant	REV__COL5A1|p.P197T|1|0.32|ENSG00000130635|chr9:134701268-134701268|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2669677734375	3	450.543326	1348.60815	0.33026	0.00014879	2.5027	0.0011276	2.8329	0.0012764	450.5444049086033	53.868	0.73974	53.868	53.545	54.285	0					53	20	3	0	0	0	0.024782	1	5921	5921		19.263	0	1	2902300	+		6830	19512	4314	4332	8434	8434					-0.05220970901837063
DIMYLQAGDN	10	Unmodified	_DIMYLQAGDN_					0	0	0			REV__ENST00000554812.5_1_14:58714534-58734239:+|nuORF	REV__ENST00000554812.5_1_14:58714534-58734239:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3132934570312	2	570.255514	1138.49647	-0.18968	-0.00010817	-4.1006	-0.0023384	-4.2903	-0.0024466	570.2531819816405	96.351	0.54346	96.194	95.923	96.466	-0.15646					20	12	2	0	0	0	0.03519	1	11888	11888		26.063	0	1	121450	+		6831	21132	4315	4333	8435	8435					-0.06723405258981074
DINARVSAI	9	Unmodified	_DINARVSAI_					0	0	0		ENST00000560334.5_1_15:79271198-79356973:-|nuORF;ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1;nc|ENSG00000058335|Q13972-2|RASGRF1	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2458190917969	2	479.769448	957.524344	-1.211	-0.00058101	3.6294	0.0017413	2.4184	0.0011603	479.77047080664687	51.625	0.42424	51.351	51.119	51.543	-0.2736					16	10	2	0	0	0	0.024292	1	5293	5293		32.812	0	1	102370			6832	1214	4316	4334	8436	8436					0.04388285783431911
DINFYDLD	8	Unmodified	_DINFYDLD_					0	0	0			REV__nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	REV__nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.810302734375	2	507.724372	1013.43419	-0.37637	-0.00019109	2.9776	0.0015118	2.6012	0.0013207	507.72576661198303	64.663	0.66821	64.429	64.059	64.728	-0.2345					23	16	2	0	0	0	0.027866	1	7311	7311		49.442	8.8689	1	103040	+		6833	20083	4317	4335	8437	8437					-0.07198808335658669
DINNIKNV	8	Unmodified	_DINNIKNV_					0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.5854187011719	2	465.256174	928.497795	-0.17528	-8.1552E-05	-0.24155	-0.00011238	-0.41683	-0.00019393	465.25593331110196	46.254	0.73053	46.254	45.784	46.515	0					28	20	2	0	0	0	0.027866	1	4577	4577		18.262	10.027	1	378610	+		6834	22908	4318	4336	8438	8438					0.030685968920806772
DIPEENKLW	9	Unmodified	_DIPEENKLW_					0	0	0			REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2901611328125	2	572.287671	1142.56079	-1.3038	-0.00074616	0.74382	0.00042568	-0.55999	-0.00032048	572.2880914128423	65.449	1.3434	65.236	64.888	66.232	-0.21327					82	32	3	0	0	0	0.4752	1	7518	7518		60.972	1.0412	1	17107000	+		6835	25087	4319	4337	8439	8439					-0.004788821105421448
DIPKYGMADQ	10	Unmodified	_DIPKYGMADQ_					0	0	0			REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2681884765625	2	569.265881	1136.51721	2.7675	0.0015754	0.61477	0.00034997	3.3822	0.0019254	569.2661420939212	18.62	2.7683	18.377	17.478	20.247	-0.24256					129	55	4	0	0	0	1.1286	1	262	262		25.574	2.5316	1	322430	+		6836	24306	4320	4338	8440	8440					-0.04558814879305828
DIPLIIENL	9	Unmodified	_DIPLIIENL_					0	0	0			REV__ENST00000260323.15_1_15:54919629-54919713:+|nuORF	REV__ENST00000260323.15_1_15:54919629-54919713:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.305419921875	2	520.305332	1038.59611	0.09195	4.7842E-05	-0.52222	-0.00027171	-0.43027	-0.00022387	520.3049806038833	93.605	1.1323	93.461	92.958	94.09	-0.1441					56	25	3	0	0	0	0.37611	1	11492	11492		67.494	5.3863	1	1772100	+		6837	29597	4321	4339	8441	8441					0.07835780417281057
DIPQVPDEI	9	Unmodified	_DIPQVPDEI_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.788330078125	2	513.261122	1024.50769	-0.9394	-0.00048216	0.70609	0.00036241	-0.23331	-0.00011975	513.261391838864	44.903	0.53004	44.804	44.554	45.084	-0.099449					39	13	4	0	0	0	0.023837	1	4238	4238		54.776	21.964	1	891360			6838	4695	4322	4340	8442	8442					-0.0035825989318709617
DIQLVTKYD	9	Unmodified	_DIQLVTKYD_					0	0	0			REV__ENSG00000025772|ENST00000372813|TOMM34	REV__ENSG00000025772|ENST00000372813|TOMM34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3099975585938	2	547.790047	1093.56554	-0.46714	-0.0002559	-0.66706	-0.00036541	-1.1342	-0.0006213	548.2903891342379	67.485	0.47355	67.509	67.35	67.824	0.023911					16	11	2	0	0	0	0.024511	1	8006	8006		32.812	3.6629	1	62891	+		6839	20023	4323	4341	8443	8443					0.022500020322468117
DIQMLLEGR	9	Unmodified	_DIQMLLEGR_					0	0	0		ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.305419921875	2	537.784241	1073.55393	-0.70849	-0.00038101	1.6151	0.0008686	0.90666	0.00048759	537.7858203262901	68.501	0.49329	68.501	68.444	68.938	0					16	12	2	0	0	0	0.024344	1	8270	8270		54.776	15.523	1	229500			6840	6382	4324	4342	8444	8444					0.020094817372637408
DIQMWRSH	8	Unmodified	_DIQMWRSH_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3046875	2	536.753276	1071.492	-0.22023	-0.00011821	-4.1275	-0.0022155	-4.3478	-0.0023337	537.2505438414021	68.984	0.41399	68.692	68.556	68.97	-0.29267					14	10	2	0	0	0	0.027866	1	8275	8275		31.53	2.3803	1	91972			6841	10155	4325	4343	8445	8445					-0.04088824891209697
DIQTHMTNN	9	Unmodified	_DIQTHMTNN_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3115234375	2	537.237655	1072.46076	0.48089	0.00025835	-3.6866	-0.0019806	-3.2057	-0.0017222	537.2356350529942	59.251	0.48573	59.251	59.035	59.52	0					21	12	2	0	0	0	0.023837	1	6775	6775		54.776	20.604	1	354030			6842	18296	4326	4344	8446	8446					-0.07257442715967954
DIQTHMTNN	9	Unmodified	_DIQTHMTNN_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3118896484375	2	537.237655	1072.46076	0.61613	0.00033101	-3.474	-0.0018664	-2.8578	-0.0015353	537.2356442968218	59.496	0.47512	59.296	59.063	59.538	-0.20016					26	12	3	0	0	0	0.023454	1	6751	6751		62.107	1.9892	1	324980			6843	18296	4326	4344	8447	8447					-0.07257442715967954
DIQTHMTNN	9	Unmodified	_DIQTHMTNN_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.237655	1072.46076	0.55069	0.00029585	-3.7646	-0.0020225	-3.2139	-0.0017266	537.235404344364	59.567	0.40188	59.37	59.173	59.575	-0.19742	0.055348	-0.00034941	NaN	62.107	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298390			6844	18296	4326	4344							-0.07257442715967954
DIQTHMTNN	9	Unmodified	_DIQTHMTNN_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.237655	1072.46076	0.24167	0.00012983	-3.5893	-0.0019283	-3.3477	-0.0017985	537.2357013754391	59.529	0.4766	59.353	59.078	59.554	-0.1761	0.038519	-0.0001611	NaN	62.107	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337480			6845	18296	4326	4344							-0.07257442715967954
DIQTHMTNN	9	Unmodified	_DIQTHMTNN_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.237655	1072.46076	-0.46512	-0.00024988	-2.8161	-0.0015129	-3.2812	-0.0017628	537.2361121622306	59.631	0.4012	59.383	59.17	59.571	-0.24842	0.068209	0.00066976	NaN	62.107	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390730			6846	18296	4326	4344							-0.07257442715967954
DIRCIHTL	8	Unmodified	_DIRCIHTL_					0	0	0			REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13	REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.8163146972656	2	485.760569	969.506586	-0.065443	-3.179E-05	0.24161	0.00011736	0.17617	8.5574E-05	485.7607495638518	34.02	1.1376	33.796	33.121	34.258	-0.22412					35	28	2	0	0	0	0.027866	1	2503	2503		57.811	9.8957	1	108750	+		6847	23355	4327	4345	8448	8448					0.020612472569155216
DIRGDLAVNA	10	Unmodified	_DIRGDLAVNA_					0	0	0		ENSG00000167580|ENST00000199280|AQP2	ENSG00000167580|ENST00000199280|AQP2	ENSG00000167580|ENST00000199280|AQP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2706909179688	2	522.277638	1042.54072	-0.17958	-9.3788E-05	3.4454	0.0017995	3.2658	0.0017057	522.2794708068882	64.033	1.0657	63.782	63.518	64.584	-0.25141					42	28	2	0	0	0	0.03519	1	7586	7586		42.864	18.345	1	690180			6848	7704	4328	4346	8449	8449					0.021153669495106442
DIRGDLAVNA	10	Unmodified	_DIRGDLAVNA_					0	0	0		ENSG00000167580|ENST00000199280|AQP2	ENSG00000167580|ENST00000199280|AQP2	ENSG00000167580|ENST00000199280|AQP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.277638	1042.54072	1.4861	0.00077615	1.6896	0.00088244	3.1757	0.0016586	522.2785101522254	63.849	0.94176	63.894	63.583	64.525	0.045502	0.056126	-0.00082074	NaN	42.864	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658580			6849	7704	4328	4346							0.021153669495106442
DIRLPNFYQ	9	Unmodified	_DIRLPNFYQ_					0	0	0		ENSG00000132429|ENST00000254765|POPDC3	ENSG00000132429|ENST00000254765|POPDC3	ENSG00000132429|ENST00000254765|POPDC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2930297851562	2	583.303655	1164.59276	-0.26526	-0.00015473	-0.47307	-0.00027594	-0.73833	-0.00043067	583.3031457587515	63.646	0.97113	63.419	63.095	64.066	-0.22773					49	24	3	0	0	0	0.024447	1	7259	7259		32.812	0	1	1657500			6850	4604	4329	4347	8450	8450					0.01704530363304002
DIRSVLEPT	9	Unmodified	_DIRSVLEPT_					0	0	0		nc|ENSG00000197006|Q9H1A3-2|METTL9;ENSG00000197006|ENST00000358154|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2716674804688	2	515.282389	1028.55022	-0.41211	-0.00021235	-1.1273	-0.00058088	-1.5394	-0.00079324	515.2822840946756	49.004	0.1777	48.851	48.792	48.97	-0.15277					7	4	2	0	0	0	0.024261	1	5018	5018		54.776	0	1	713120			6851	9942	4330	4348	8451	8451					0.03709135235044414
DIRTLTLL	8	Unmodified	_DIRTLTLL_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7635803222656	2	472.792392	943.570232	0.51312	0.0002426	-0.60803	-0.00028747	-0.094908	-4.4872E-05	472.7920235716358	22.947	0.46805	22.745	22.499	22.967	-0.20193					15	9	2	0	0	0	0.027866	1	881	881		63.306	26.147	1	55851			6852	2770	4331	4349	8452	8452					0.0961893096566655
DISDCFIDGN	10	Unmodified	_DISDCFIDGN_					0	0	0		ENSG00000150540|ENST00000280097|HNMT	ENSG00000150540|ENST00000280097|HNMT	ENSG00000150540|ENST00000280097|HNMT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.79296875	2	549.724046	1097.43354	-0.39787	-0.00021872	3.9808	0.0021883	3.5829	0.0019696	549.7262157060372	67.249	1.3123	67.01	66.796	68.109	-0.23814					54	31	2	0	0	0	0.03519	1	7733	7733		19.997	0	1	179680			6853	6142	4332	4350	8453	8453					-0.11127971047017127
DISDVVLII	9	Unmodified	_DISDVVLII_					0	0	0			REV__ENSG00000165997|ENST00000377275|ARL5B	REV__ENSG00000165997|ENST00000377275|ARL5B	MSMS	OPSCC_39_ClassI_Rep-1	1	493.797119140625	2	493.792058	985.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.43	1	106.43	105.93	106.93	0								0	0	0	0.52164	1	13666	13666		50.025	5.9077	1		+		6854	25955	4333	4351	8454	8454					0.07620091525961925
DISFAVQKLL	10	Unmodified	_DISFAVQKLL_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|5	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|5	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.279296875	2	567.331882	1132.64921	0.37405	0.00021221	-1.1172	-0.00063382	-0.74314	-0.00042161	567.3310262609895	79.029	0.71278	78.774	78.557	79.27	-0.25471					34	16	3	0	0	0	0.03519	1	9499	9499		32.812	0	1	524090			6855	418	4334	4352	8455	8455					0.0881915819995811
DISILGLFV	9	Unmodified	_DISILGLFV_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.78912353515625	2	488.789318	975.564084	0.74427	0.00036379	-2.0168	-0.00098579	-1.2725	-0.000622	488.7885781983941	105.91	0.35692	105.75	105.52	105.87	-0.16133					26	14	2	0	0	0	0.67308	1	13173	13173		47.916	9.1095	1	201460	+		6856	23836	4335	4353	8456	8456					0.075324127341446
DISILGLFV	9	Unmodified	_DISILGLFV_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.789318	975.564084	-0.83097	-0.00040617	-0.34191	-0.00016712	-1.1729	-0.00057329	488.7893209572929	105.82	0.38496	105.69	105.47	105.85	-0.1328	-0.030824	0.00079656	NaN	47.916	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98633	+		6857	23836	4335	4353							0.075324127341446
DISKAISAL	9	Unmodified	_DISKAISAL_					0	0	0		nc|ENSG00000182979|Q13330-2|MTA1;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	nc|ENSG00000182979|Q13330-2|MTA1	nc|ENSG00000182979|Q13330-2|MTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2691955566406	2	459.26875	916.522947	0.46071	0.00021159	1.1449	0.00052581	1.6056	0.0007374	459.26914099451005	36.692	0.82137	36.692	36.298	37.12	0					51	21	3	0	0	0	0.31037	1	2947	2947		74.255	5.7703	1	2063600			6858	9184	4336	4354	8457	8457					0.061346516946514384
DISKAISAL	9	Unmodified	_DISKAISAL_					0	0	0		nc|ENSG00000182979|Q13330-2|MTA1;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	nc|ENSG00000182979|Q13330-2|MTA1	nc|ENSG00000182979|Q13330-2|MTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.26922607421875	2	459.26875	916.522947	-0.37768	-0.00017346	1.7907	0.00082239	1.413	0.00064894	459.26945141338086	36.547	0.82342	36.504	36.101	36.925	-0.042458					45	21	3	0	0	0	0.42604	1	2903	2903		64.207	2.0999	1	2032300			6859	9184	4336	4354	8458	8458					0.061346516946514384
DISKPRKTT	9	Unmodified	_DISKPRKTT_					0	0	0			REV__nc|ENSG00000008441|Q14938-6|NFIX	REV__nc|ENSG00000008441|Q14938-6|NFIX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3037719726562	2	523.303655	1044.59276	-0.28114	-0.00014712	0.21503	0.00011253	-0.066114	-3.4598E-05	523.3036290350911	89.646	0.60334	89.518	89.242	89.846	-0.12774					45	13	4	0	0	0	0.89441	1	10978	10978		32.812	0	1	897320	+		6860	19882	4337	4355	8459	8459					0.07224530363282611
DISLGHSLGE	10	Unmodified	_DISLGHSLGE_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.771240234375	2	514.256371	1026.49819	-0.76151	-0.00039161	-0.22257	-0.00011446	-0.98408	-0.00050607	514.2563794723808	43.132	0.25787	43.132	43.038	43.296	0					9	6	2	0	0	0	0.03519	1	4039	4039		37.812	0	1	58652			6861	7259	4338	4356	8460	8460					-0.014000281787048152
DISLGIPKG	9	Unmodified	_DISLGIPKG_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7795104980469	2	450.263468	898.512382	0.0207	9.3206E-06	-0.11942	-5.3769E-05	-0.098717	-4.4448E-05	450.263283613298	47.378	0.66799	47.378	47.111	47.779	0					53	19	4	0	0	0	0.024427	1	4811	4811		34.173	11.13	1	4155300			6862	8932	4339	4357	8461	8461					0.05906669040234647
DISLGIPKG	9	Unmodified	_DISLGIPKG_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.263468	898.512382	0.35091	0.000158	-0.53654	-0.00024158	-0.18562	-8.3579E-05	450.2631206566916	47.567	0.67546	47.414	47.089	47.764	-0.15301	0.025884	-0.00043858	NaN	14.137	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3437200			6863	8932	4339	4357							0.05906669040234647
DISLGIPKG	9	Unmodified	_DISLGIPKG_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	450.263468	898.512382	-0.73198	-0.00032958	0.63329	0.00028515	-0.098685	-4.4434E-05	450.2636504357696	47.313	0.63263	47.372	47.106	47.739	0.059097	-0.015975	0.00061488	NaN	14.137	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4143300			6864	8932	4339	4357							0.05906669040234647
DISLLFCIF	9	Unmodified	_DISLLFCIF_					0	0	0		ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7583618164062	2	535.783179	1069.5518	-0.53467	-0.00028646	4.204	0.0022524	3.6693	0.001966	535.7853470977167	53.83	0.85491	53.585	53.311	54.166	-0.2453					51	26	3	0	0	0	0.024412	1	5616	5616		24.203	0	1	2147700			6865	4414	4340	4358	8462	8462					0.019810529994401804
DISQTLSVL	9	Unmodified	_DISQTLSVL_					0	0	0		nc|ENSG998|Q9N2K0|HERV-H-ENH1;nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG998|Q9N2K0|HERV-H-ENH1;nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.2711181640625	2	488.27149	974.528426	-0.088439	-4.3182E-05	-0.09074	-4.4306E-05	-0.17918	-8.7488E-05	488.27129443139864	24.025	0.51681	23.845	23.607	24.124	-0.17989					25	11	3	0	0	0	0.56934	1	1008	1008		54.776	1.4249	1	519830			6866	18854;18855	4341	4359	8463	8463					0.0401433048649551
DISRNPIL	8	Unmodified	_DISRNPIL_					0	0	0		ENST00000332408.8_1_15:49118117-49118171:-|nuORF	ENST00000332408.8_1_15:49118117-49118171:-|nuORF	ENST00000332408.8_1_15:49118117-49118171:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2687072753906	2	464.266542	926.51853	0.72036	0.00033444	3.8842	0.0018033	4.6046	0.0021377	464.26829765811	83.584	0.80561	83.372	82.962	83.768	-0.21159					37	18	3	0	0	0	0.74904	1	10084	10084		63.306	0	1	756640			6867	12355	4342	4360	8464	8464					0.052331872717559236
DISSPCYLLT	10	Unmodified	_DISSPCYLLT_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.3150634765625	2	556.270632	1110.52671	-0.34175	-0.00019011	2.231	0.001241	1.8892	0.0010509	556.271989637366	67.653	0.70889	67.415	66.998	67.707	-0.23814					23	16	2	0	0	0	0.03519	1	7792	7792		19.997	0	1	196440	+		6868	20551	4343	4361	8465	8465					-0.024130465938014822
DITDAEKYFI	10	Unmodified	_DITDAEKYFI_					0	0	0		nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	608.3856811523438	2	607.800611	1213.58667	-0.32384	-0.00019683	-1.5601	-0.00094821	-1.8839	-0.001145	607.7999484959587	97.878	0.54903	97.876	97.59	98.139	-0.0020752					17	12	2	0	0	0	0.03519	1	12426	12426		27.047	4.0048	1	85269			6869	10927	4344	4362	8466	8466					-0.011580326589182732
DITILTPKL	9	Unmodified	_DITILTPKL_					0	0	0		nc|ENSG00000257923|P39880-4|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1	nc|ENSG00000257923|P39880-4|CUX1	nc|ENSG00000257923|P39880-4|CUX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.31573486328125	2	507.3157	1012.61685	-0.4837	-0.00024539	-0.23374	-0.00011858	-0.71745	-0.00036397	507.3155579012584	68.859	1.6599	68.859	68.295	69.954	0					108	42	4	0	0	0	0.016871	1	8260	8260		152.47	4.7772	1	23697000			6870	10924	4345	4363	8467	8467					0.11104370796931562
DITILTPKL	9	Unmodified	_DITILTPKL_					0	0	0		nc|ENSG00000257923|P39880-4|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1	nc|ENSG00000257923|P39880-4|CUX1	nc|ENSG00000257923|P39880-4|CUX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3160400390625	2	507.3157	1012.61685	-0.16219	-8.228E-05	-0.39282	-0.00019928	-0.555	-0.00028156	507.3154706633685	68.94	1.5004	68.955	68.495	69.995	0.015129					111	38	4	0	0	0	0.016871	1	8174	8174		152.47	21.439	1	23208000			6871	10924	4345	4363	8468	8468					0.11104370796931562
DITLDIDNY	9	Unmodified	_DITLDIDNY_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7943115234375	2	541.256037	1080.49752	0.26724	0.00014465	-0.043072	-2.3313E-05	0.22417	0.00012133	541.25605520992	51.383	0.72722	51.202	50.945	51.673	-0.18071					49	18	4	0	0	0	0.024374	1	5286	5286		32.812	0	1	1595400	+		6872	19756	4346	4364	8469	8469					-0.039508676184368596
DITLLFRAS	9	Unmodified	_DITLLFRAS_					0	0	0		ENST00000512780.2_1_4:4459120-4543730:-|nuORF;ENSG00000168818|ENST00000306200|STX18;ENST00000583091.1_1_17:28395652-28396225:+|nuORF	ENST00000512780.2_1_4:4459120-4543730:-|nuORF	ENST00000512780.2_1_4:4459120-4543730:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2627563476562	2	518.295299	1034.57605	0.31499	0.00016326	1.1524	0.00059726	1.4674	0.00076052	518.2963631544667	56.323	0.86575	56.107	55.525	56.39	-0.21607					28	22	2	0	0	0	0.024506	1	6071	6071		16.473	0	1	165270			6873	7869	4347	4365	8470	8470					0.06014029477319127
DITNEIRHV	9	Unmodified	_DITNEIRHV_					0	0	0			REV__ENST00000503051.1_1_4:53527397-53527544:+|nuORF	REV__ENST00000503051.1_1_4:53527397-53527544:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7671508789062	2	548.790912	1095.56727	-0.61604	-0.00033808	-4.1575	-0.0022816	-4.7736	-0.0026197	548.7876704007361	31.915	0.25361	31.758	31.694	31.948	-0.15772					6	5	2	0	0	0	0.024427	1	2139	2139		34.173	3.6689	1	51296	+		6874	33944	4348	4366	8471	8471					0.023310558408638826
DITNMLLLL	9	Unmodified	_DITNMLLLL_					0	0	0		ENST00000468723.1_1_7:23313099-23313135:+|nuORF	ENST00000468723.1_1_7:23313099-23313135:+|nuORF	ENST00000468723.1_1_7:23313099-23313135:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3235473632812	2	523.301736	1044.58892	0.4346	0.00022743	2.583	0.0013517	3.0176	0.0015791	523.3029635555	71.967	0.17936	71.977	71.915	72.094	0.0097733					6	4	2	0	0	0	0.018983	1	8673	8673		93.195	16.421	1	245340			6875	14882	4349	4367	8472	8472					0.06840724545213561
DITPDCPSFD	10	Unmodified	_DITPDCPSFD_					0	0	0			REV__ENST00000542060.5_1_1:180945439-180945631:-|nuORF	REV__ENST00000542060.5_1_1:180945439-180945631:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7982177734375	2	555.226422	1108.43829	1.1896	0.00066051	-3.1968	-0.0017749	-2.0072	-0.0011144	555.2247603368705	98.286	0.39305	98.162	98.069	98.463	-0.12414					12	8	2	0	0	0	0.03519	1	12187	12187		40.778	0	1	58449	+		6876	34786	4350	4368	8473	8473					-0.11159086904262949
DITPDEAHEI	10	Unmodified	_DITPDEAHEI_					0	0	0			REV__ENSG00000130560|ENST00000371756|UBAC1	REV__ENSG00000130560|ENST00000371756|UBAC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.283447265625	2	570.264393	1138.51423	0.46398	0.00026459	3.1352	0.0017879	3.5992	0.0020525	570.266231968171	81.754	1.6687	81.526	81.147	82.816	-0.2289					115	38	4	0	0	0	0.03519	1	9848	9848		40.778	21.675	1	1481000	+		6877	23127	4351	4369	8474	8474					-0.049483667324466296
DITRVDEEE	9	Unmodified	_DITRVDEEE_					0	0	0			REV__nc|ENSG00000078674|Q15154-3|PCM1	REV__nc|ENSG00000078674|Q15154-3|PCM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8137817382812	2	553.254025	1104.4935	-0.1174	-6.4954E-05	0.83846	0.00046388	0.72105	0.00039893	553.2543604163895	58.499	0.45346	58.311	58.093	58.546	-0.18795					25	10	3	0	0	0	0.024292	1	6457	6457		40.778	7.9657	1	441660	+		6878	36481	4352	4370	8475	8475					-0.05456957112141936
DITSPLLTSV	10	Unmodified	_DITSPLLTSV_					0	0	0			REV__ENSG00000138768|ENST00000514213|USO1	REV__ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.288330078125	2	523.292422	1044.57029	-0.32803	-0.00017165	1.4372	0.00075209	1.1092	0.00058043	523.2930497133508	28.989	0.90581	28.818	28.251	29.157	-0.17155					30	20	2	0	0	0	0.03519	1	1681	1681		32.812	0	1	557010	+		6879	23895	4353	4371	8476	8476					0.049788861749902935
DITTRLALAT	10	Unmodified	_DITTRLALAT_					0	0	0			REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	REV__nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.8131103515625	2	537.811313	1073.60807	-0.52493	-0.00028232	2.9236	0.0015724	2.3987	0.00129	537.8124378611373	71.398	0.97847	71.408	70.937	71.916	0.010735					68	25	5	0	0	0	0.65479	1	8562	8562		70.816	1.1886	1	3965800	+		6880	24149	4354	4372	8477	8477					0.07421397160464949
DIVAVFGF	8	Unmodified	_DIVAVFGF_					0	0	0			REV__ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	REV__ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.75921630859375	2	434.234179	866.453805	-0.45982	-0.00019967	1.8135	0.0007875	1.3537	0.00058783	434.234964803881	21.607	0.13921	21.607	21.491	21.63	0					4	2	2	0	0	0	0.027866	1	677	677		21.702	7.927	1	6280.6	+		6881	28900	4355	4373	8478	8478					0.015236124657690198
DIVFLATDIN	10	Unmodified	_DIVFLATDIN_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2;nc|ENSG00000196470|Q8IUQ4-3|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8153686523438	2	560.797872	1119.58119	-0.37678	-0.00021129	0.054203	3.0397E-05	-0.32257	-0.0001809	560.7978659926606	81.834	0.80601	81.703	81.217	82.023	-0.13075					40	19	3	0	0	0	0.03519	1	10107	10107		44.377	7.2181	1	157080			6882	9069	4356	4374	8479	8479					0.026182885492971764
DIVFMRTW	8	Unmodified	_DIVFMRTW_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2754516601562	2	534.27077	1066.52699	-1.6124	-0.00086144	3.4319	0.0018335	1.8195	0.0009721	534.2715461394356	49.544	0.41542	49.618	49.352	49.768	0.074196					16	10	2	0	0	0	0.027866	1	5064	5064		38.806	0	1	81342			6883	7462	4357	4375	8480	8480					-0.003615820832692407
DIVGMCRL	8	Unmodified	_DIVGMCRL_					0	0	0		chr5:149628647-149628809|117|12.44|0.03|8.52|+|0|None,ARHGEF37|1	chr5:149628647-149628809|117|12.44|0.03|8.52|+|0|None,ARHGEF37|1	chr5:149628647-149628809|117|12.44|0.03|8.52|+|0|None,ARHGEF37|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.777587890625	2	453.730423	905.446293	0.10703	4.8564E-05	-1.0456	-0.00047442	-0.93856	-0.00042585	453.72985303423565	41.116	0.5298	41.139	40.899	41.429	0.023006					22	14	2	0	0	0	0.027866	1	3653	3653		42.474	0	1	191010			6884	400	4358	4376	8481	8481					-0.01021186397827023
DIVHYIIL	8	Unmodified	_DIVHYIIL_					0	0	0			REV__nc|ENSG00000187486|Q14654-2|KCNJ11	REV__nc|ENSG00000187486|Q14654-2|KCNJ11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.30694580078125	2	493.289485	984.564418	-0.11307	-5.5778E-05	-3.1259	-0.001542	-3.2389	-0.0015977	493.2878442746417	69.469	0.74393	69.247	68.978	69.722	-0.22245					38	17	3	0	0	0	0.027866	1	8057	8057		54.765	5.3231	1	854940	+		6885	27933	4359	4377	8482	8482					0.07151832453996576
DIVKAQLET	9	Unmodified	_DIVKAQLET_					0	0	0			REV__ENST00000507185.1_1_5:139661015-139682658:-|nuORF	REV__ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.80023193359375	2	508.784764	1015.55498	-0.39751	-0.00020225	1.1377	0.00057886	0.74022	0.00037661	508.7851993051599	31.15	0.65211	30.998	30.765	31.417	-0.15231					24	16	2	0	0	0	0.023239	1	2013	2013		84.916	42.519	1	562880	+		6886	22039	4360	4378	8483	8483					0.04782019377819324
DIVMPGLL	8	Unmodified	_DIVMPGLL_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.2266540527344	2	429.243689	856.472826	-0.081218	-3.4862E-05	3.9737	0.0017057	3.8925	0.0016708	429.2452804538938	45.034	0.67377	44.782	44.549	45.223	-0.25252					24	17	2	0	0	0	0.027866	1	4267	4267		49.211	5.094	1	246230			6887	6623;16491	4361	4379	8484	8484					0.038848257651807216
DIVRINYLI	9	Unmodified	_DIVRINYLI_					0	0	0		ENST00000258412.7_1_2:219138982-219139078:-|nuORF	ENST00000258412.7_1_2:219138982-219139078:-|nuORF	ENST00000258412.7_1_2:219138982-219139078:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8150634765625	2	559.832049	1117.64954	-0.70153	-0.00039274	2.9	0.0016235	2.1984	0.0012308	559.8338415415783	81.295	1.1381	81.319	81.007	82.145	0.023911					51	27	3	0	0	0	0.023181	1	10054	10054		82.305	32.863	1	218920			6888	11421	4362	4380	8485	8485					0.09542577919796713
DIWKKFEL	8	Unmodified	_DIWKKFEL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000116990|P12524-2|MYCL;nc|ENSG00000204053|P12525|MYCLP1;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;ENSG00000134323|ENST00000281043|MYCN	nc|ENSG00000136997|P01106-1|MYC;ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8002319335938	2	539.800217	1077.58588	-0.089862	-4.8507E-05	0.52088	0.00028117	0.43102	0.00023267	539.8002430944117	68.28	0.93215	68.025	67.661	68.593	-0.25516					59	22	4	0	0	0	0.28835	2	7876	7876;7888		116.9	5.2553	1	3353000			6889	4783;5079	4363	4381	8486;8487	8486					0.05019217482708882
DIWKKFEL	8	Unmodified	_DIWKKFEL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC;nc|ENSG00000116990|P12524-2|MYCL;nc|ENSG00000204053|P12525|MYCLP1;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL;ENSG00000134323|ENST00000281043|MYCN	nc|ENSG00000136997|P01106-1|MYC;ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.800048828125	2	539.800217	1077.58588	0.10618	5.7316E-05	0.0062626	3.3806E-06	0.11244	6.0697E-05	539.8001652370033	68.333	0.92837	68.099	67.387	68.316	-0.23376					53	22	4	0	0	0	0.34573	1	7901	7901		104.75	10.74	1	3512500			6890	4783;5079	4363	4381	8488	8488					0.05019217482708882
DIWSYGVVL	9	Unmodified	_DIWSYGVVL_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.8450927734375	2	526.276575	1050.5386	-0.7521	-0.00039581	1.8066	0.00095076	1.0545	0.00055495	526.780335406236	55.513	0.59906	55.611	55.257	55.856	0.098015					27	15	3	0	0	0	0.023775	1	6086	6086		57.811	0	1	322020			6891	7898	4364	4382	8489	8489					0.015349382117165078
DIYEQVVK	8	Unmodified	_DIYEQVVK_					0	0	0			REV__nc|ENSG00000132670|P18433-6|PTPRA	REV__nc|ENSG00000132670|P18433-6|PTPRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.82916259765625	2	497.266207	992.517862	0.29432	0.00014635	3.1904	0.0015865	3.4847	0.0017328	497.268118286707	51.909	0.52216	51.909	51.6	52.123	0					27	14	3	0	0	0	0.027866	1	5561	5561		35.618	3.6634	1	137820	+		6892	23306	4365	4383	8490	8490					0.02130347832053303
DIYHSPSW	8	Unmodified	_DIYHSPSW_					0	0	0		ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7644958496094	2	502.727249	1003.43995	-0.37784	-0.00018995	-0.012025	-6.0451E-06	-0.38987	-0.000196	502.7270418030071	31.517	0.857	31.529	31.127	31.984	0.011797					33	20	2	0	0	0	0.027866	1	2123	2123		18.324	0	1	136350			6893	10377	4366	4384	8491	8491					-0.06163665033329835
DIYQSDPSF	9	Unmodified	_DIYQSDPSF_					0	0	0			REV__NCKAP1-PARD3|1|fusion	REV__NCKAP1-PARD3|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.2344360351562	2	536.235104	1070.45566	0.38814	0.00020814	-0.4594	-0.00024634	-0.071254	-3.8209E-05	536.2346850396289	67.631	0.70683	67.376	67.033	67.74	-0.25517					29	16	2	0	0	0	0.35646	1	7792	7792		68.787	4.5796	1	1063100	+		6894	24623	4367	4385	8492	8492					-0.07675423306955054
DIYSKKTL	8	Unmodified	_DIYSKKTL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000483847.1_1_3:47712102-47719818:-|nuORF	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.2745056152344	2	484.276575	966.538597	0.11639	5.6366E-05	0.65949	0.00031937	0.77588	0.00037574	484.27677556175155	34.346	0.57616	34.122	33.844	34.42	-0.22412					41	14	4	0	0	0	0.83003	1	2544	2544		56.721	4.4219	1	3267100			6895	8376	4368	4386	8493	8493					0.05398938211715176
DIYSKKTL	8	Unmodified	_DIYSKKTL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000483847.1_1_3:47712102-47719818:-|nuORF	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.276611328125	2	484.276575	966.538597	-0.22327	-0.00010812	0.4739	0.0002295	0.25063	0.00012138	484.27663771437153	34.294	0.57602	34.087	33.75	34.326	-0.20696					38	14	4	0	0	0	0.42912	1	2512	2512		93.195	5.4412	1	2954800			6896	8376	4368	4386	8494	8494					0.05398938211715176
DIYSKKTL	8	Unmodified	_DIYSKKTL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000483847.1_1_3:47712102-47719818:-|nuORF	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.2758483886719	2	484.276575	966.538597	-0.64613	-0.0003129	0.42849	0.00020751	-0.21764	-0.0001054	484.2765559745257	34.282	0.59197	34.107	33.742	34.334	-0.17557					35	14	4	0	0	0	0.64735	2	2500	2500;2512		71.877	6.0743	1	2922700			6897	8376	4368	4386	8495;8496	8495					0.05398938211715176
DIYSKKTL	8	Unmodified	_DIYSKKTL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000483847.1_1_3:47712102-47719818:-|nuORF	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.276575	966.538597	-1.195	-0.00057869	7.7909	0.003773	6.5959	0.0031943	484.28258619428163	34.299	0.26526	34.349	34.213	34.479	0.050255	0.18281	0.0067484	NaN	93.195	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52676			6898	8376	4368	4386							0.05398938211715176
DIYTVRAKIEI	11	Unmodified	_DIYTVRAKIEI_					0	0	0			REV__ENSG00000165934|ENST00000298875|CPSF2	REV__ENSG00000165934|ENST00000298875|CPSF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2273864746094	3	440.922244	1319.7449	-0.4117	-0.00018153	-2.0306	-0.00089532	-2.4423	-0.0010768	440.9215024957252	34.979	0.48497	34.979	34.785	35.27	0					18	12	2	0	0	0	0.024759	1	2646	2646		23.378	17.377	1	104490	+		6899	25946	4369	4387	8497	8497					0.0978188632018373
DIYTVRAKIEI	11	Unmodified	_DIYTVRAKIEI_					0	0	0			REV__ENSG00000165934|ENST00000298875|CPSF2	REV__ENSG00000165934|ENST00000298875|CPSF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.2273254394531	3	440.922244	1319.7449	-0.44725	-0.0001972	-1.2357	-0.00054484	-1.6829	-0.00074205	440.92156648985906	34.737	0.53598	34.715	34.513	35.049	-0.021767					22	13	2	0	0	0	0.024759	1	2590	2590		23.378	1.5975	1	83304	+		6900	25946	4369	4387	8498	8498					0.0978188632018373
DIYWTNKS	8	Unmodified	_DIYWTNKS_					0	0	0			REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.2989501953125	2	513.748182	1025.48181	-0.69061	-0.0003548	3.2007	0.0016444	2.5101	0.0012896	513.749556432809	52.201	0.4828	52.292	52.119	52.602	0.091938					14	11	2	0	0	0	0.027866	1	5545	5545		20.947	0	1	61713	+		6901	19639	4370	4388	8499	8499					-0.02991109344816323
DIYYSLNIY	9	Unmodified	_DIYYSLNIY_					0	0	0		ENSG00000172139|ENST00000305815|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.2858276367188	2	582.284597	1162.55464	0.45514	0.00026502	-0.28963	-0.00016865	0.16551	9.6375E-05	582.2842022291694	83.958	0.89286	83.746	83.393	84.286	-0.21159					59	20	4	0	0	0	0.62163	1	10132	10132		51.335	0.14276	1	729570			6902	8244	4371	4389	8500	8500					-0.02013400342048044
DKAAFPKEV	9	Unmodified	_DKAAFPKEV_					0	0	0			REV__ENSG00000112214|ENST00000450218|FHL5	REV__ENSG00000112214|ENST00000450218|FHL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7514953613281	2	502.7742	1003.53385	-1.4741	-0.00074113	-3.533	-0.0017763	-5.0071	-0.0025174	502.7721893127133	33.951	0.35036	33.775	33.622	33.972	-0.17557					14	8	2	0	0	0	0.024389	1	2445	2445		35.152	8.4591	1	838510	+		6903	21978	4372	4390	8501	8501					0.032220540689422705
DKAAKLAIA	9	Unmodified	_DKAAKLAIA_					0	0	0			REV__nc|ENSG00000119471|Q6YN16-2|HSDL2	REV__nc|ENSG00000119471|Q6YN16-2|HSDL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2532043457031	2	450.779285	899.544017	0.90223	0.00040671	3.3709	0.0015195	4.2731	0.0019262	450.7806454114956	65.845	0.6543	65.845	65.529	66.184	0					29	16	2	0	0	0	0.024484	1	7855	7855		23.523	3.0409	1	131650	+		6904	22457	4373	4391	8502	8502					0.09022661794153919
DKAANKMPL	9	Unmodified	_DKAANKMPL_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7720031738281	2	494.268227	986.521901	-0.67699	-0.00033462	-0.70212	-0.00034704	-1.3791	-0.00068165	494.2677570813873	33.288	0.3063	33.294	33.154	33.461	0.0066261					14	8	2	0	0	0	0.024381	1	2350	2350		29.15	0	1	294230			6905	2969	4374	4392	8503	8503					0.02810114054091173
DKAAYLQNL	9	Unmodified	_DKAAYLQNL_					0	0	0		ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.2789916992188	2	518.277106	1034.53966	-1.2076	-0.0006259	-0.12595	-6.5279E-05	-1.3336	-0.00069118	518.2771423187905	61.959	0.76851	61.959	61.453	62.222	0					79	20	6	0	0	0	0.75397	1	7163	7163		42.396	3.1433	1	11196000			6906	2956	4375	4393	8504	8504					0.02377152580584152
DKAFHVKYHKH	11	Unmodified	_DKAFHVKYHKH_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2666320800781	3	470.586077	1408.7364	-0.47109	-0.00022169	4.2037	0.0019782	3.7326	0.0017565	470.588065270915	29.682	0.38088	29.437	29.273	29.654	-0.24524					12	8	2	0	0	0	0.024747	1	1852	1852		26.75	0	1	45849	+		6907	27296	4376	4394	8505	8505					0.048383771942098974
DKAFHVKYHKH	11	Unmodified	_DKAFHVKYHKH_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.2664489746094	3	470.586077	1408.7364	-0.43612	-0.00020523	4.3116	0.002029	3.8755	0.0018238	470.92241028830534	29.57	0.37182	29.42	29.254	29.626	-0.14952					14	8	2	0	0	0	0.02473	1	1818	1818		21.032	0	1	55323	+		6908	27296	4376	4394	8506	8506					0.048383771942098974
DKAGKLTV	8	Unmodified	_DKAGKLTV_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8919677734375	2	416.25036	830.486168	-1.0343	-0.00043052	2.7511	0.0011451	1.7168	0.00071462	416.25136408609677	37.601	0.92378	37.381	37.037	37.961	-0.2195					32	24	2	0	0	0	0.027866	1	3103	3103		16.473	0	1	289160	+		6909	22225	4377	4395	8507	8507					0.06414399868742748
DKAIEEPY	8	Unmodified	_DKAIEEPY_					0	0	0			REV__ENST00000337385.7_1_21:35821964-35883431:-|nuORF	REV__ENST00000337385.7_1_21:35821964-35883431:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7611389160156	2	482.73474	963.454927	0.35891	0.00017326	-3.119	-0.0015057	-2.7601	-0.0013324	482.73484184074414	41.92	0.26616	41.92	41.688	41.954	0					10	7	2	0	0	0	0.027866	1	3806	3806		19.36	0	1	39924	+		6910	30563	4378	4396	8508	8508					-0.028262179559988
DKAILQLN	8	Unmodified	_DKAILQLN_					0	0	0			REV__ENSG00000084774|ENST00000264705|CAD	REV__ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.78057861328125	2	457.768917	913.523281	0.018232	8.3461E-06	0.1346	6.1616E-05	0.15283	6.9962E-05	457.7687809317561	49.462	0.87908	49.311	48.866	49.745	-0.1512					46	23	3	0	0	0	0.027866	1	5081	5081		27.882	5.9224	1	899660	+		6911	20743	4379	4397	8509	8509					0.06306071414519465
DKAILQLN	8	Unmodified	_DKAILQLN_					0	0	0			REV__ENSG00000084774|ENST00000264705|CAD	REV__ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.77984619140625	2	457.768917	913.523281	-0.054779	-2.5076E-05	-0.15911	-7.2834E-05	-0.21388	-9.791E-05	457.7687544172251	49.582	0.72198	49.302	48.825	49.547	-0.27977					41	18	3	0	0	0	0.027866	1	4951	4951		42.396	1.618	1	1083000	+		6912	20743	4379	4397	8510	8510					0.06306071414519465
DKAITFRLT	9	Unmodified	_DKAITFRLT_					0	0	0		nc|ENSG00000112139|Q8NFP4-2|MDGA1;ENSG00000112139|ENST00000434837|MDGA1;ENST00000478143.2_1_6:37617732-37622777:-|nuORF	nc|ENSG00000112139|Q8NFP4-2|MDGA1	nc|ENSG00000112139|Q8NFP4-2|MDGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7999877929688	2	532.808574	1063.60259	-0.74587	-0.0003974	2.835	0.0015105	2.0891	0.0011131	532.8093027628976	57.277	0.23199	57.277	57.073	57.305	0					7	5	2	0	0	0	0.024447	1	6436	6436		25.574	0	1	209280			6913	3174	4380	4398	8511	8511					0.07333718368636255
DKAKTEKAE	9	Unmodified	_DKAKTEKAE_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2966003417969	2	510.272021	1018.52949	-0.99835	-0.00050943	-2.4906	-0.0012709	-3.489	-0.0017803	510.27075531931683	62.806	0.63671	62.806	62.489	63.126	0					25	15	2	0	0	0	0.024405	1	7329	7329		35.618	2.8059	1	280130	+		6914	22308	4381	4399	8512	8512					0.02096544855362481
DKALLKDPR	9	Unmodified	_DKALLKDPR_					0	0	0		ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3108520507812	2	528.314023	1054.61349	-0.75952	-0.00040126	1.1562	0.00061085	0.39671	0.00020959	528.3148035983775	61.085	0.46907	60.832	60.584	61.053	-0.25373					16	11	2	0	0	0	0.024409	1	6774	6774		49.536	7.1399	1	126370			6915	6662	4382	4400	8513	8513					0.08837120742941806
DKALLKDPR	9	Unmodified	_DKALLKDPR_					0	0	0		ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.314023	1054.61349	-1.3346	-0.00070507	-0.85148	-0.00044985	-2.186	-0.0011549	528.314352715896	60.789	0.52319	60.789	60.473	60.996	0	-0.018046	-0.0012673	NaN	49.536	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621130			6916	6662	4382	4400							0.08837120742941806
DKALLKDPR	9	Unmodified	_DKALLKDPR_					0	0	0		ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.314023	1054.61349	-0.72503	-0.00038304	0.11528	6.0906E-05	-0.60975	-0.00032214	528.3140301183662	61.066	0.63548	60.853	60.531	61.166	-0.21339	0.045525	-0.00024583	NaN	49.536	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596510			6917	6662	4382	4400							0.08837120742941806
DKALLKDPR	9	Unmodified	_DKALLKDPR_					0	0	0		ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.314023	1054.61349	-1.0385	-0.00054866	0.41555	0.00021954	-0.62297	-0.00032912	528.3141635007646	60.713	0.6741	60.792	60.465	61.139	0.078888	-0.015258	7.1443E-05	NaN	49.536	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654200			6918	6662	4382	4400							0.08837120742941806
DKALPPIR	8	Unmodified	_DKALPPIR_					0	0	0			REV__ENST00000483089.5_1_7:99070565-99075929:+|nuORF	REV__ENST00000483089.5_1_7:99070565-99075929:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2621154785156	2	455.279452	908.544351	0.22332	0.00010167	-1.1687	-0.00053209	-0.94539	-0.00043041	455.278727247363	18.887	0.34295	18.755	18.597	18.94	-0.13147					9	6	2	0	0	0	0.027866	1	339	339		25.45	1.2474	1	12230	+		6919	33110	4383	4401	8514	8514					0.08642081514028632
DKAPLRPA	8	Unmodified	_DKAPLRPA_					0	0	0			REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2554626464844	2	434.255977	866.497401	0.39855	0.00017307	-2.6044	-0.001131	-2.2059	-0.00095791	434.2550809335902	103.32	0.85603	103.19	103.1	103.96	-0.12724					32	19	2	0	0	0	0.027866	1	12848	12848		31.955	0	1	265350	+		6920	20077	4384	4402	8515	8515					0.058812219628862294
DKAPPEPSSD	10	Unmodified	_DKAPPEPSSD_					0	0	0			REV__ENST00000465322.1_1_7:115797393-115799936:-|nuORF	REV__ENST00000465322.1_1_7:115797393-115799936:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.291259765625	2	521.738011	1041.46147	-0.37123	-0.00019369	3.4982	0.0018251	3.127	0.0016314	521.7400758785327	65.521	1.0172	65.27	65.027	66.044	-0.25112					45	24	4	0	0	0	0.03519	1	7541	7541		17.468	0	1	248190	+		6921	33000	4385	4403	8516	8516					-0.05760324795278393
DKAPVLKV	8	Unmodified	_DKAPVLKV_					0	0	0		ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	ENSG00000104763|ENST00000637790|ASAH1	ENSG00000104763|ENST00000637790|ASAH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.7926940917969	2	435.276378	868.538203	-0.44275	-0.00019272	0.97506	0.00042442	0.53231	0.0002317	435.27659945906726	33.309	0.64046	33.143	32.8	33.44	-0.16565					32	15	3	0	0	0	0.027866	1	2328	2328		17.365	0	1	264740			6922	2596	4386	4404	8517	8517					0.09867563282523406
DKARTSLFI	9	Unmodified	_DKARTSLFI_					0	0	0			REV__ENSG00000073712|ENST00000341590|FERMT2	REV__ENSG00000073712|ENST00000341590|FERMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.802734375	2	525.800749	1049.58694	-0.89929	-0.00047285	4.0905	0.0021508	3.1912	0.0016779	525.8029813282415	101.69	1.3686	101.69	101.28	102.65	0					75	30	4	0	0	0	0.31037	1	13046	13046		74.255	2.8771	1	2025900	+		6923	20507	4387	4405	8518	8518					0.06413431851615314
DKASFHIL	8	Unmodified	_DKASFHIL_					0	0	0			REV__ENSG00000169174|ENST00000302118|PCSK9	REV__ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7952575683594	2	465.75581	929.497067	-1.2613	-0.00058746	2.1801	0.0010154	0.9188	0.00042794	465.7563788286707	33.587	0.71333	33.421	32.998	33.711	-0.16565					37	17	3	0	0	0	0.027866	1	2434	2434		25.45	0	1	678450	+		6924	26327	4388	4406	8519	8519					0.029498022430516357
DKASQAPPL	9	Unmodified	_DKASQAPPL_					0	0	0			REV__ENST00000534381.1_1_11:226080-230657:-|nuORF	REV__ENST00000534381.1_1_11:226080-230657:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.7845458984375	2	463.750724	925.486896	-0.6909	-0.00032041	0.80115	0.00037153	0.11025	5.1128E-05	463.75088378924596	43.592	0.58011	43.354	43.099	43.679	-0.23736					23	15	2	0	0	0	0.024025	1	4013	4013		52.937	0	1	261250	+		6925	34388	4389	4407	8520	8520					0.021171945178025453
DKATYWEL	8	Unmodified	_DKATYWEL_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2867431640625	2	513.250557	1024.48656	-0.2297	-0.00011789	-4.2726	-0.0021929	-4.5023	-0.0023108	513.2484154371833	72.128	0.24377	71.93	71.748	71.992	-0.19811					7	5	2	0	0	0	0.027866	1	8413	8413		29.15	13.508	1	37005	+		6926	20983	4390	4408	8521	8521					-0.024702252020460946
DKAWKLKEL	9	Unmodified	_DKAWKLKEL_					0	0	0			REV__ENSG00000134901|ENST00000376004|POGLUT2	REV__ENSG00000134901|ENST00000376004|POGLUT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.781494140625	2	565.832049	1129.64954	-0.67595	-0.00038248	0.62617	0.0003543	-0.049786	-2.817E-05	565.8324165342361	78.581	0.79498	78.581	78.282	79.077	0					32	18	3	0	0	0	0.024367	1	9734	9734		52.937	6.9847	1	144400	+		6927	23495	4391	4409	8522	8522					0.089905779198034
DKAWKLKEL	9	Unmodified	_DKAWKLKEL_					0	0	0			REV__ENSG00000134901|ENST00000376004|POGLUT2	REV__ENSG00000134901|ENST00000376004|POGLUT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	565.832049	1129.64954	0.29105	0.00016468	-0.19231	-0.00010881	0.09874	5.587E-05	565.8317115701476	78.697	0.51827	78.466	78.218	78.736	-0.23141	-0.08353	-0.00051097	NaN	44.377	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80135	+		6928	23495	4391	4409							0.089905779198034
DKAWKLKEL	9	Unmodified	_DKAWKLKEL_					0	0	0			REV__ENSG00000134901|ENST00000376004|POGLUT2	REV__ENSG00000134901|ENST00000376004|POGLUT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	565.832049	1129.64954	0.00030695	1.7368E-07	-0.87875	-0.00049722	-0.87844	-0.00049705	565.831613121237	78.593	0.56179	78.437	78.212	78.773	-0.15592	-0.11185	-0.0012878	NaN	44.377	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89973	+		6929	23495	4391	4409							0.089905779198034
DKAYNVLLIAP	11	Unmodified	_DKAYNVLLIAP_					0	0	0			REV__ENSG00000100156|ENST00000681075|SLC16A8	REV__ENSG00000100156|ENST00000681075|SLC16A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2349853515625	3	406.236051	1215.68632	-0.41967	-0.00017048	-1.6169	-0.00065686	-2.0366	-0.00082734	406.2352348402459	29.142	0.75863	28.993	28.743	29.501	-0.14952					44	17	4	0	0	0	1.017	1	1739	1739		33.039	0	1	1022100	+		6930	21058	4392	4410	8523	8523					0.08710829745723458
DKAYSATYYVA	11	Unmodified	_DKAYSATYYVA_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.7533874511719	3	417.867916	1250.58192	-0.39106	-0.00016341	0.64095	0.00026783	0.24989	0.00010442	417.86812217079097	45.616	0.80531	45.414	45.161	45.967	-0.20226					75	22	5	0	0	0	0.024734	1	4342	4342		21.78	0.94327	1	5255500	+		6931	26779	4393	4411	8524	8524					-0.033349168016684416
DKAYSATYYVA	11	Unmodified	_DKAYSATYYVA_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	417.867916	1250.58192	-0.10067	-4.2069E-05	0.3678	0.00015369	0.26712	0.00011162	417.8680043344747	45.68	0.81903	45.427	45.157	45.976	-0.25252	0.027777	-0.00018041	NaN	21.78	80	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5440900	+		6932	26779	4393	4411							-0.033349168016684416
DKCLFKLV	8	Unmodified	_DKCLFKLV_					0	0	0			REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2569274902344	2	483.278063	964.541574	0.061189	2.9571E-05	3.4162	0.001651	3.4774	0.0016806	483.2794241680555	36.848	0.90912	36.785	36.396	37.305	-0.063389					45	23	3	0	0	0	0.027866	1	2941	2941		35.618	12.576	1	584720	+		6933	19857	4394	4412	8525	8525					0.057884900648673465
DKCLVFSIE	9	Unmodified	_DKCLVFSIE_					0	0	0			REV__ENSG00000175376|ENST00000533544|EIF1AD	REV__ENSG00000175376|ENST00000533544|EIF1AD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.314208984375	2	527.267893	1052.52123	-0.091324	-4.8152E-05	2.0899	0.0011019	1.9986	0.0010538	527.2683322336707	74.923	0.7789	74.664	74.244	75.023	-0.25887					37	18	3	0	0	0	0.024427	1	9183	9183		42.396	15.703	1	102240	+		6934	26945	4395	4413	8526	8526					-0.002927253855887102
DKCMFLLY	8	Carbamidomethyl (C)	_DKC(Carbamidomethyl (C))MFLLY_	DKC(1)MFLLY		DKC(77)MFLLY		0	1	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2581787109375	2	545.259013	1088.50347	-1.0755	-0.00058643	0.20965	0.00011431	-0.86586	-0.00047212	545.259005641427	61.008	1.252	60.832	60.403	61.655	-0.1761					101	30	5	0	0	0	0.59392	2	6799	6799;6847		76.847	10.892	1	6942700			6935	4161	4396	4414	8527;8528	8527	52				-0.03723763912103095
DKCMFLLY	8	Carbamidomethyl (C)	_DKC(Carbamidomethyl (C))MFLLY_	DKC(1)MFLLY		DKC(77)MFLLY		0	1	0		nc|ENSG00000125885|Q9UJA3-2|MCM8;ENSG00000125885|ENST00000610722|MCM8;nc|ENSG00000125885|Q9UJA3-4|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2584838867188	2	545.259013	1088.50347	-1.1851	-0.00064616	0.18307	9.9822E-05	-1.002	-0.00054634	545.2589999201597	61.18	1.4153	60.926	60.294	61.71	-0.25373					106	34	5	0	0	0	0.59392	1	6840	6840		76.847	13.54	1	6782000			6936	4161	4396	4414	8529	8529	52				-0.03723763912103095
DKDCNLSVK	9	Unmodified	_DKDCNLSVK_					0	0	0		nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2742919921875	2	511.252774	1020.491	0.11806	6.0356E-05	-4.4786	-0.0022897	-4.3605	-0.0022293	511.7520256946162	76.688	0.71992	76.436	76.103	76.823	-0.25162					25	16	2	0	0	0	0.024367	1	9143	9143		44.377	21.335	1	217780			6937	9180	4397	4415	8530	8530					-0.018430840507903667
DKDCVLNATLK	11	Unmodified	_DKDCVLNATLK_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.5788879394531	3	407.216551	1218.62782	0.43421	0.00017682	3.5943	0.0014637	4.0285	0.0016405	407.2178660652262	34	0.46886	33.996	33.829	34.298	-0.0045624					22	11	3	0	0	0	0.02473	1	2513	2513		21.032	3.5642	1	61247			6938	3980	4398	4416	8531	8531					0.02725405108913037
DKDDTQQIL	9	Unmodified	_DKDDTQQIL_					0	0	0		ENST00000491771.5_1_2:152135291-152146334:-|nuORF;ENSG00000123609|ENST00000243346|NMI	ENST00000491771.5_1_2:152135291-152146334:-|nuORF;ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8251953125	2	538.266936	1074.51932	-1.0609	-0.00057103	-0.48911	-0.00026327	-1.55	-0.0008343	538.7697754693537	48.465	0.27282	48.312	48.125	48.398	-0.15301					10	7	2	0	0	0	0.024337	1	4910	4910		49.536	1.6204	1	81158			6939	3991;15469	4399	4417	8532	8532					-0.01496062869864545
DKDFVCFADR	10	Unmodified	_DKDFVCFADR_					0	0	0			REV__ENST00000400429.3_1_13:41744904-41745177:-|nuORF	REV__ENST00000400429.3_1_13:41744904-41745177:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2391357421875	3	405.853612	1214.53901	0.7816	0.00031721	2.6444	0.0010732	3.426	0.0013905	405.8546177550714	26.91	0.70214	26.991	26.543	27.245	0.081293					35	17	3	0	0	0	0.03519	1	1409	1409		66.962	16.928	1	301840	+		6940	31850	4400	4418	8533	8533					-0.059680101307549194
DKDIIAEEN	9	Unmodified	_DKDIIAEEN_					0	0	0		C3|p.E753K|1|0.19|ENSG00000125730|chr19:6702568-6702568|C/T|missense_variant	C3|p.E753K|1|0.19|ENSG00000125730|chr19:6702568-6702568|C/T|missense_variant	C3|p.E753K|1|0.19|ENSG00000125730|chr19:6702568-6702568|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7908325195312	2	523.753661	1045.49277	0.66282	0.00034715	-2.635	-0.0013801	-1.9722	-0.0010329	523.7520955723562	70.655	0.24934	70.362	70.292	70.542	-0.29291					6	5	2	0	0	0	0.024445	1	8525	8525		46.457	5.6786	1	275590			6941	197	4401	4419	8534	8534					-0.02815751761181673
DKDKKSKKSS	10	Unmodified	_DKDKKSKKSS_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8230590820312	2	575.824952	1149.63535	-0.82073	-0.0004726	-1.6545	-0.00095272	-2.4753	-0.0014253	575.8237823931892	44.995	1.506	44.846	44.523	46.029	-0.1488					84	43	3	0	0	0	0.94316	1	4325	4325		51.193	1.7511	1	2149500	+		6942	27860	4402	4420	8535	8535					0.06651880700860602
DKDKVTEW	8	Unmodified	_DKDKVTEW_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7745361328125	2	510.753464	1019.49238	-1.1298	-0.00057707	0.050464	2.5774E-05	-1.0794	-0.0005513	510.75336981173217	44.436	0.41878	44.217	43.972	44.391	-0.21939					20	11	2	0	0	0	0.027866	1	4156	4156		35.618	5.3006	1	324370	+		6943	22439	4403	4421	8536	8536					-0.01659126690390167
DKDLLYSVY	9	Unmodified	_DKDLLYSVY_					0	0	0			REV__ENSG00000165556|ENST00000381020|CDX2	REV__ENSG00000165556|ENST00000381020|CDX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.7927856445312	2	558.284597	1114.55464	0.021007	1.1728E-05	1.1372	0.00063485	1.1582	0.00064658	558.2850440566694	57.714	0.41904	57.524	57.37	57.789	-0.19017					27	10	4	0	0	0	0.024344	1	6313	6313		54.776	6.8607	1	1462400	+		6944	25902	4404	4422	8537	8537					0.0019459965794794698
DKDPESFF	8	Unmodified	_DKDPESFF_					0	0	0		nc|ENSG00000121964|Q4AE62-6|GTDC1;nc|ENSG00000121964|Q4AE62-4|GTDC1;nc|ENSG00000121964|Q4AE62-5|GTDC1;ENSG00000121964|ENST00000682281|GTDC1	nc|ENSG00000121964|Q4AE62-6|GTDC1	nc|ENSG00000121964|Q4AE62-6|GTDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2586975097656	2	492.71909	983.423627	0.036122	1.7798E-05	3.6821	0.0018142	3.7182	0.001832	492.72063160852315	54.337	0.82009	54.092	53.625	54.445	-0.2453					41	25	3	0	0	0	0.027866	1	5749	5749		60.972	13.056	1	607490			6945	3901	4405	4423	8538	8538					-0.06874790990093516
DKDPTPLEPVN	11	Unmodified	_DKDPTPLEPVN_					0	0	0			REV__ZW10|p.E441K|1|0.23|ENSG00000086827|chr11:113743992-113743992|C/T|missense_variant	REV__ZW10|p.E441K|1|0.23|ENSG00000086827|chr11:113743992-113743992|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.7322998046875	3	408.875071	1223.60338	0.16319	6.6724E-05	3.4784	0.0014222	3.6416	0.001489	408.87561853909835	31.009	0.12762	31.021	30.956	31.084	0.011797					4	2	2	0	0	0	0.024767	1	2023	2023		25.068	7.5998	1	12260	+		6946	37830	4406	4424	8539	8539					0.0005246822704521037
DKDRVKLL	8	Unmodified	_DKDRVKLL_					0	0	0			REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2540283203125	2	493.803291	985.59203	-0.75982	-0.0003752	-1.2708	-0.00062755	-2.0307	-0.0010027	493.8032875570309	57.066	0.2853	56.899	56.751	57.036	-0.1672					13	7	2	0	0	0	0.027866	1	6227	6227		34.173	0	1	132650	+		6947	29049	4407	4425	8540	8540					0.09865735714231505
DKDSLLFM	8	Unmodified	_DKDSLLFM_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7900695800781	2	484.741511	967.468469	-0.68361	-0.00033137	3.8869	0.0018841	3.2033	0.0015528	484.7432037070864	33.269	0.152	33.269	33.135	33.287	0					5	3	2	0	0	0	0.027866	1	2364	2364		24.203	0	1	38436			6948	6649	4408	4426	8541	8541					-0.016566834483910498
DKDYFTFIANF	11	Unmodified	_DKDYFTFIANF_					0	0	0			REV__ENSG00000172137|ENST00000302628|CALB2	REV__ENSG00000172137|ENST00000302628|CALB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.75933837890625	3	460.887199	1379.63977	1.4732	0.00067897	0.79263	0.00036531	2.2658	0.0010443	460.8874945262366	37.101	0.38655	37.101	36.846	37.233	0					16	9	2	0	0	0	0.024809	1	2966	2966		17.167	4.7339	1	213920	+		6949	26635	4409	4427	8542	8542					-0.034866548762465754
DKEEKKID	8	Unmodified	_DKEEKKID_					0	0	0			REV__ENSG00000130254|ENST00000252542|SAFB2	REV__ENSG00000130254|ENST00000252542|SAFB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7799377441406	2	502.766571	1003.51859	-0.1046	-5.2588E-05	-3.6719	-0.0018461	-3.7765	-0.0018987	502.763220170293	53.554	0.47713	53.295	53	53.477	-0.25838					26	12	3	0	0	0	0.027866	1	5615	5615		27.882	5.9224	1	199000	+		6950	23096	4410	4428	8543	8543					0.016971424811004
DKEERSDAAM	10	Unmodified	_DKEERSDAAM_					0	0	0			REV__YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	REV__YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	576.2869262695312	2	576.253502	1150.49245	-1.2051	-0.00069442	-0.91162	-0.00052532	-2.1167	-0.0012197	576.2527926779011	47.355	0.54536	47.355	47.076	47.622	0					31	15	3	0	0	0	0.03519	1	4743	4743		24.519	17.784	1	471360	+		6951	20726	4411	4429	8544	8544					-0.07677494752692837
DKEFFGLRDYY	11	Unmodified	_DKEFFGLRDYY_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7984619140625	3	484.897987	1451.67213	1.5677	0.00076018	3.4872	0.0016909	5.0549	0.0024511	485.2344838557022	59.063	0.2492	58.876	58.721	58.971	-0.18705					9	6	2	0	0	0	0.024726	1	6682	6682		32.034	11.719	1	162990			6952	8414	4412	4430	8545	8545					-0.035638674732126674
DKEGIKQLGDD	11	Unmodified	_DKEGIKQLGDD_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8878173828125	3	406.538458	1216.59355	0.25766	0.00010475	2.1523	0.000875	2.41	0.00097975	406.87373171967613	33.673	0.36133	33.442	33.193	33.554	-0.23107					13	8	2	0	0	0	0.024727	1	2431	2431		10.145	3.8236	1	84465			6953	8707	4413	4431	8546	8546					-0.0060871977832448465
DKEGIKQLGDD	11	Unmodified	_DKEGIKQLGDD_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	406.538458	1216.59355	0.60322	0.00024523	-0.90586	-0.00036827	-0.30264	-0.00012304	406.53822013995983	33.557	0.24578	33.557	33.454	33.7	0	0.11068	-0.0025202	NaN	6.4189	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69100			6954	8707	4413	4431							-0.0060871977832448465
DKEGIKQLGDD	11	Unmodified	_DKEGIKQLGDD_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	406.538458	1216.59355	-0.08886	-3.6125E-05	0.1159	4.7119E-05	0.027042	1.0994E-05	406.5384691524352	33.397	0.31113	33.404	33.223	33.534	0.0066261	-0.042185	-0.0012741	NaN	6.4189	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100690			6955	8707	4413	4431							-0.0060871977832448465
DKEHEPVL	8	Unmodified	_DKEHEPVL_					0	0	0			REV__ENSG00000085377|ENST00000652536|PREP	REV__ENSG00000085377|ENST00000652536|PREP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7486267089844	2	483.748182	965.481811	-0.15459	-7.4781E-05	0.9903	0.00047905	0.83571	0.00040427	483.7485057417841	68.501	0.98721	68.501	68.179	69.166	0					61	25	3	0	0	0	0.91956	1	8221	8221		49.442	1.5259	1	3879100	+		6956	20747	4414	4432	8547	8547					-0.002311093448156498
DKEIKELENL	10	Unmodified	_DKEIKELENL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.8913879394531	3	410.890721	1229.65033	-0.69407	-0.00028519	-3.7387	-0.0015362	-4.4327	-0.0018214	410.88926086495786	28.226	1.3334	27.981	27.677	29.011	-0.24524					88	31	5	0	0	0	0.03519	1	1663	1663		39.873	5.7867	1	3887700			6957	8357	4415	4433	8548	8548					0.044693277782016594
DKEIKKLN	8	Unmodified	_DKEIKKLN_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.77911376953125	2	494.295299	986.576045	0.020701	1.0232E-05	-1.4636	-0.00072346	-1.4429	-0.00071323	494.2943143911997	57.06	0.4015	57.06	56.904	57.305	0					15	10	2	0	0	0	0.027866	1	6440	6440		60.294	4.7898	1	327030			6958	10188	4416	4434	8549	8549					0.08222029477326487
DKEKDFVVV	9	Unmodified	_DKEKDFVVV_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3086547851562	2	539.792589	1077.57063	-1.2912	-0.00069697	1.0724	0.00057889	-0.21874	-0.00011807	539.7931057052167	73.087	1.3461	72.895	72.295	73.641	-0.19214					72	32	4	0	0	0	0.024438	1	8517	8517		29.17	0	1	1263200	+		6959	26356	4417	4435	8550	8550					0.03494305894855643
DKEKEEKDL	9	Unmodified	_DKEKEEKDL_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.7672119140625	2	567.287868	1132.56118	-0.39312	-0.00022301	-2.0519	-0.001164	-2.445	-0.001387	567.2863208516718	41.231	0.78019	41.231	40.871	41.652	0					32	21	2	0	0	0	0.024374	1	3659	3659		40.778	0	1	144360	+		6960	23500	4418	4436	8551	8551					0.00020492818657658063
DKEKELEEI	9	Unmodified	_DKEKELEEI_					0	0	0			REV__ENSG00000244754|ENST00000267068|N4BP2L2	REV__ENSG00000244754|ENST00000267068|N4BP2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3088989257812	2	566.790244	1131.56593	-1.1753	-0.00066616	-0.32362	-0.00018342	-1.4989	-0.00084958	566.7883455239897	69.532	0.55792	69.547	69.316	69.874	0.015129					21	13	2	0	0	0	0.022657	1	8347	8347		77.318	11.852	1	135770	+		6961	29004	4419	4437	8552	8552					0.005413769614278863
DKELLKHKDR	10	Unmodified	_DKELLKHKDR_					0	0	0		nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1;nc|ENSG00000164304|Q8TC20-4|CAGE1	nc|ENSG00000164304|Q8TC20-3|CAGE1	nc|ENSG00000164304|Q8TC20-3|CAGE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.26458740234375	3	427.913971	1280.72008	0.059322	2.5385E-05	3.5505	0.0015193	3.6098	0.0015447	428.2500317844513	53.875	0.50016	53.677	53.422	53.922	-0.19739					18	15	2	0	0	0	0.03519	1	5680	5680		21.78	12.134	1	131450			6962	7255	4420	4438	8553	8553					0.0909525123745425
DKELLQHFI	9	Unmodified	_DKELLQHFI_					0	0	0		ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.2620849609375	2	571.813856	1141.61316	-1.3469	-0.00077018	-1.6915	-0.00096721	-3.0384	-0.0017374	571.8122635565832	43.202	0.65449	43.202	42.967	43.621	0					40	17	4	0	0	0	0.024447	1	3994	3994		32.812	1.2826	1	631920			6963	6548	4421	4439	8554	8554					0.04801701023075111
DKELNQKE	8	Unmodified	_DKELNQKE_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC;REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.8109130859375	2	502.256371	1002.49819	0.60386	0.00030329	3.0647	0.0015393	3.6686	0.0018426	502.2577018063152	70.082	0.53371	69.789	69.427	69.96	-0.29292					18	12	2	0	0	0	0.027866	1	8383	8383		39.253	13.679	1	190960	+		6964	20232;33027	4422	4440	8555	8555					-0.0029602817870681974
DKELNQKE	8	Unmodified	_DKELNQKE_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC;REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.256371	1002.49819	0.12485	6.2705E-05	3.6464	0.0018314	3.7713	0.0018942	502.2581054038708	69.714	0.40871	69.714	69.506	69.915	0	-0.048256	2.8938E-05	NaN	47.657	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205690	+		6965	20232;33027	4422	4440							-0.0029602817870681974
DKELNQKE	8	Unmodified	_DKELNQKE_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC;REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.256371	1002.49819	-0.25583	-0.00012849	3.8456	0.0019315	3.5897	0.001803	502.2583153862116	69.771	0.40738	69.784	69.585	69.993	0.012421	0.02155	0.00022895	NaN	47.657	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224410	+		6966	20232;33027	4422	4440							-0.0029602817870681974
DKELTEPGSD	10	Unmodified	_DKELTEPGSD_					0	0	0			REV__JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	REV__JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3246459960938	2	545.748576	1089.4826	-0.53685	-0.00029299	-1.4814	-0.00080846	-2.0182	-0.0011014	545.747688598106	67.591	1.2795	67.615	67.152	68.432	0.023911					51	32	2	0	0	0	0.03519	1	8119	8119		33.922	0	1	1762700	+		6967	24837	4423	4441	8556	8556					-0.058563594864153856
DKEQQQALL	9	Unmodified	_DKEQQQALL_					0	0	0		nc|ENSG00000165259|Q7Z353-2|HDX;ENSG00000165259|ENST00000373177|HDX	nc|ENSG00000165259|Q7Z353-2|HDX	nc|ENSG00000165259|Q7Z353-2|HDX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7850341796875	2	536.785296	1071.55604	-0.61426	-0.00032972	0.21054	0.00011301	-0.40372	-0.00021671	536.7853357507854	52.967	0.87309	52.82	52.366	53.239	-0.14724					56	22	4	0	0	0	0.22902	1	5686	5686		85.161	4.7062	1	2836600			6968	7386	4424	4442	8557	8557					0.023122337467157195
DKERLFKDL	9	Unmodified	_DKERLFKDL_					0	0	0			REV__EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	REV__EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.3047485351562	2	582.324588	1162.63462	-1.2779	-0.00074416	-0.87778	-0.00051115	-2.1557	-0.0012553	582.3226175885378	45.855	0.13409	45.855	45.784	45.919	0					8	3	3	0	0	0	0.024447	1	4491	4491		25.574	2.5316	1	73097	+		6969	24172	4425	4443	8558	8558					0.059810860518155096
DKERTSLF	8	Unmodified	_DKERTSLF_					0	0	0			REV__ENST00000506753.1_1_4:122075678-122085325:-|nuORF	REV__ENST00000506753.1_1_4:122075678-122085325:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2624816894531	2	498.261456	994.50836	-0.54519	-0.00027165	-2.4269	-0.0012092	-2.9721	-0.0014809	498.2597513918022	48.071	0.51863	47.974	47.52	48.039	-0.097549					45	13	7	0	0	0	0.027866	1	4741	4741		58.782	31.986	1	2303000	+		6970	20163	4426	4444	8559	8559					0.010885795465242154
DKERTSLF	8	Unmodified	_DKERTSLF_					0	0	0			REV__ENST00000506753.1_1_4:122075678-122085325:-|nuORF	REV__ENST00000506753.1_1_4:122075678-122085325:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.26220703125	2	498.261456	994.50836	-0.89719	-0.00044703	-1.7673	-0.00088058	-2.6645	-0.0013276	498.26022082848124	48.364	0.5222	48.088	47.664	48.187	-0.27598					42	13	4	0	0	0	0.027866	1	4787	4787		56.721	17.468	1	2200400	+		6971	20163	4426	4444	8560	8560					0.010885795465242154
DKEVDMLF	8	Unmodified	_DKEVDMLF_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.28741455078125	2	498.738968	995.463383	0.15487	7.724E-05	-0.22697	-0.0001132	-0.072097	-3.5958E-05	498.73872263065203	59.779	2.2538	59.579	58.671	60.925	-0.20016					131	60	3	0	0	0	0.027866	1	6812	6812		44.117	19.598	1	993550	+		6972	24805	4427	4445	8561	8561					-0.034529873110273
DKFCSLIT	8	Unmodified	_DKFCSLIT_					0	0	0			REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7966613769531	2	463.736228	925.457904	0.25416	0.00011787	3.9162	0.0018161	4.1704	0.001934	463.7379153888909	31.756	1.2851	31.825	31.527	32.812	0.068962					50	32	2	0	0	0	0.027866	1	2186	2186		45.952	3.0877	1	1858500	+		6973	36808	4428	4446	8562	8562					-0.007806661028325834
DKFKEMGE	8	Unmodified	_DKFKEMGE_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.22821044921875	2	492.228768	982.442982	-0.012116	-5.9641E-06	-4.3881	-0.00216	-4.4002	-0.0021659	492.22672057016047	62.105	0.31206	61.848	61.706	62.018	-0.25725					12	7	2	0	0	0	0.027866	1	6981	6981		37.159	5.2042	1	97513	+		6974	25481	4429	4447	8563	8563					-0.04894157970829838
DKFQQLLLCL	10	Unmodified	_DKFQQLLLCL_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.73748779296875	3	407.56177	1219.66348	0.17716	7.2203E-05	-1.914	-0.00078008	-1.7369	-0.00070788	407.5610183115897	37.784	0.2577	37.604	37.443	37.701	-0.17929					10	6	2	0	0	0	0.03519	1	3062	3062		20.837	9.7404	1	63180			6975	5068	4430	4448	8564	8564					0.062434873565962334
DKFQSSMNL	9	Unmodified	_DKFQSSMNL_					0	0	0			REV__TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	REV__TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8302612304688	2	535.252774	1068.491	0.56174	0.00030067	3.763	0.0020142	4.3248	0.0023148	535.2548657859635	63.775	1.077	63.775	63.161	64.238	0					42	29	2	0	0	0	0.024418	1	7454	7454		37.812	0	1	117230	+		6976	21414	4431	4449	8565	8565					-0.040510840507977264
DKFQSSMNL	9	Unmodified	_DKFQSSMNL_					0	0	0			REV__TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	REV__TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.252774	1068.491	-0.43606	-0.0002334	4.5133	0.0024158	4.0773	0.0021824	535.2552078682371	63.777	1.1657	63.526	63.3	64.466	-0.25141	-0.17539	0.00092899	NaN	40.058	42	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114390	+		6977	21414	4431	4449							-0.040510840507977264
DKFQSSMNL	9	Unmodified	_DKFQSSMNL_					0	0	0			REV__TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	REV__TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.252774	1068.491	1.1016	0.00058961	2.6995	0.0014449	3.8011	0.0020345	535.2541387667009	63.755	0.85985	63.803	63.368	64.227	0.048214	0.102	-0.0010127	NaN	40.058	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136980	+		6978	21414	4431	4449							-0.040510840507977264
DKFRPPLL	8	Unmodified	_DKFRPPLL_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7;WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant;ENST00000591524.1_1_18:54424563-54448991:+|nuORF	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.25830078125	2	493.295102	984.575651	-1.4024	-0.00069179	0.76419	0.00037697	-0.63819	-0.00031482	493.2949781615401	53.931	0.39198	53.795	53.661	54.053	-0.13617					17	12	2	0	0	0	0.027866	1	5720	5720		30.504	5.0535	1	177210			6979	1957	4432	4450	8566	8566					0.08274654548142735
DKGAPRSV	8	Unmodified	_DKGAPRSV_					0	0	0			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.2296142578125	2	415.229959	828.445365	0.40021	0.00016618	0.27596	0.00011459	0.67617	0.00028077	415.2299953417559	27.091	1.4348	27.091	26.489	27.924	0					88	36	4	0	0	0	0.73796	1	1455	1455		64.207	12.872	1	2843300	+		6980	20949	4433	4451	8567	8567					0.024280585491396778
DKGAQAAR	8	Unmodified	_DKGAQAAR_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2;LPIN2|p.D402Mfs*8|1|0.1|ENSG00000101577|chr18:2934415-2934416|-/AT|frameshift_variant	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	408.7322998046875	2	408.719759	815.424964	0.14392	5.8822E-05	-0.13428	-5.4884E-05	0.0096348	3.9379E-06	408.71925482103563	31.081	0.25422	31.081	31.003	31.257	0					7	5	2	0	0	0	0.027866	1	2057	2057		12.207	0	1	61637			6981	2337	4434	4452	8568	8568					0.009868878893257715
DKGATFFLHSK	11	Unmodified	_DKGATFFLHSK_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.5582275390625	3	417.555784	1249.64552	-0.087614	-3.6584E-05	-1.7428	-0.00072773	-1.8304	-0.00076431	417.55493518259567	23.538	1.3255	23.615	23.312	24.637	0.076239					75	29	4	0	0	0	0.024723	1	1021	1021		10.562	2.1546	1	483120	+		6982	20302	4435	4453	8569	8569					0.030684884260836043
DKGATFFLHSK	11	Unmodified	_DKGATFFLHSK_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	417.555784	1249.64552	-0.0020871	-8.715E-07	-1.9833	-0.00082813	-1.9854	-0.000829	417.554865518826	23.684	1.1195	23.684	23.399	24.518	0	0.042315	-0.00032124	NaN	10.562	70	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876020	+		6983	20302	4435	4453							0.030684884260836043
DKGDNSNCNWL	11	Unmodified	_DKGDNSNCNWL_					0	0	0			REV__nc|ENSG00000164347|Q969S9-2|GFM2	REV__nc|ENSG00000164347|Q969S9-2|GFM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.5133972167969	3	422.512026	1264.51425	-0.11506	-4.8613E-05	1.8419	0.00077825	1.7269	0.00072963	422.51335710581304	31.637	1.8259	31.706	31.327	33.153	0.06896					157	46	7	0	0	0	1.0584	1	2086	2086		22.781	0.20172	1	32141000	+		6984	25745	4436	4454	8570	8570					-0.10742690004099131
DKGILLNW	8	Unmodified	_DKGILLNW_					0	0	0		nc|ENSG00000106633|P35557-3|GCK;ENSG00000106633|ENST00000403799|GCK;nc|ENSG00000106633|P35557-2|GCK	nc|ENSG00000106633|P35557-3|GCK	nc|ENSG00000106633|P35557-3|GCK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.24365234375	2	479.77146	957.528367	0.6299	0.00030221	-4.4225	-0.0021218	-3.7927	-0.0018196	479.76948408391416	40.501	0.59967	40.501	40.381	40.981	0					23	16	2	0	0	0	0.027866	1	3551	3551		63.306	8.53	1	205590			6985	2804	4437	4455	8571	8571					0.04790375277138992
DKGILVHG	8	Unmodified	_DKGILVHG_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;ENST00000552253.1_1_12:70986014-71031175:-|nuORF;ENST00000538174.6_1_12:70979073-71031175:-|nuORF	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.53009033203125	2	419.742702	837.470852	1.9519	0.0008193	-1.3093	-0.00054957	0.64261	0.00026973	419.74197489007776	23.309	0.45793	23.117	22.942	23.4	-0.19117					21	10	3	0	0	0	0.027866	1	868	868		12.207	0	1	129440			6986	4234	4438	4456	8572	8572					0.045615330715691016
DKGIPVLQG	9	Unmodified	_DKGIPVLQG_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7793273925781	2	463.768917	925.523281	0.070229	3.257E-05	0.041061	1.9043E-05	0.11129	5.1613E-05	463.76895287216604	67.515	0.58636	67.515	67.245	67.831	0					22	14	2	0	0	0	0.024323	1	8104	8104		20.947	1.8434	1	131550			6987	7979	4439	4457	8573	8573					0.05754071414514783
DKGIPVLQG	9	Unmodified	_DKGIPVLQG_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.77947998046875	2	463.768917	925.523281	0.86379	0.0004006	-0.91461	-0.00042417	-0.050811	-2.3565E-05	463.768479660656	67.569	0.57948	67.593	67.43	68.009	0.023903					22	14	2	0	0	0	0.024427	1	8052	8052		19.997	0	1	111800			6988	7979	4439	4457	8574	8574					0.05754071414514783
DKGKKKLM	8	Unmodified	_DKGKKKLM_					0	0	0			REV__ENSG00000233802|ENST00000623787|TRIM49D2	REV__ENSG00000233802|ENST00000623787|TRIM49D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7847595214844	2	474.288963	946.563372	-0.28771	-0.00013646	-3.0272	-0.0014357	-3.3149	-0.0015722	474.28731000194716	34.058	0.67328	34.109	33.884	34.557	0.050251					26	16	3	0	0	0	0.027866	1	2515	2515		27.882	11.409	1	1064800	+		6989	27445	4440	4458	8575	8575					0.08795294813432974
DKGKLKPNL	9	Unmodified	_DKGKLKPNL_					0	0	0		ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7680969238281	2	506.811116	1011.60768	-0.85425	-0.00043294	1.2273	0.00062203	0.37309	0.00018908	506.81170655951763	61.226	0.72292	60.972	60.623	61.346	-0.25373					25	17	2	0	0	0	0.024397	1	6830	6830		39.253	2.2244	1	250500			6990	1925	4441	4459	8576	8576					0.10234022231270501
DKGLIRLF	8	Unmodified	_DKGLIRLF_					0	0	0			REV__ENST00000530015.1_1_11:74913922-74914042:+|nuORF	REV__ENST00000530015.1_1_11:74913922-74914042:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2648010253906	2	481.295102	960.575651	0.096343	4.6369E-05	-0.17696	-8.5168E-05	-0.080613	-3.8799E-05	481.2947274317455	37.306	0.54183	37.242	37.014	37.556	-0.063385					30	14	3	0	0	0	0.027866	1	3068	3068		47.916	3.3845	1	332550	+		6991	34526	4442	4460	8577	8577					0.09378654548129362
DKGLKEILN	9	Unmodified	_DKGLKEILN_					0	0	0			REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|7	REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3038940429688	2	515.300581	1028.58661	-1.4781	-0.00076167	-3.9157	-0.0020177	-5.3938	-0.0027794	515.2989427215027	30.115	0.57121	30.115	29.855	30.426	0					19	13	2	0	0	0	0.024313	1	1867	1867		51.193	3.5354	1	96485	+		6992	19443	4443	4461	8578	8578					0.07346012131779389
DKGNVFLVQN	10	Unmodified	_DKGNVFLVQN_					0	0	0			REV__ENST00000574998.5_1_16:14186646-14234409:+|nuORF	REV__ENST00000574998.5_1_16:14186646-14234409:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3192749023438	2	567.301113	1132.58767	0.21318	0.00012093	-1.659	-0.00094114	-1.4458	-0.0008202	567.8015509098478	57.562	0.60744	57.387	56.964	57.571	-0.1749					33	15	3	0	0	0	0.03519	1	6401	6401		46.457	0	1	174440	+		6993	35455	4444	4462	8579	8579					0.026682265006456873
DKGPILLL	8	Unmodified	_DKGPILLL_					0	0	0			REV__ENST00000275072.4_1_6:89862778-89862823:+|nuORF	REV__ENST00000275072.4_1_6:89862778-89862823:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7785339355469	2	434.778754	867.542954	0.36886	0.00016037	-0.45401	-0.0001974	-0.085157	-3.7025E-05	434.77861666998047	83.241	1.6706	83.102	82.523	84.194	-0.1386					84	38	4	0	0	0	0.42327	1	10039	10039		94.006	10.719	1	1269500	+		6994	29843	4445	4463	8580	8580					0.10388447425293634
DKGPVGPLD	9	Unmodified	_DKGPVGPLD_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.25390625	2	449.23745	896.460347	0.19893	8.9368E-05	0.27103	0.00012176	0.46997	0.00021113	449.23745731929563	49.682	0.96688	49.531	49.256	50.223	-0.1512					37	26	3	0	0	0	0.024397	1	5093	5093		39.253	21.888	1	189890	+		6995	33549	4446	4464	8581	8581					0.007975056264740488
DKGPVGPLD	9	Unmodified	_DKGPVGPLD_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.23745	896.460347	0.53125	0.00023866	-0.41563	-0.00018672	0.11562	5.194E-05	449.2372052076447	49.536	0.62938	49.536	49.176	49.805	0	0.018651	-0.00050937	NaN	62.107	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168040	+		6996	33549	4446	4464							0.007975056264740488
DKGPVGPLD	9	Unmodified	_DKGPVGPLD_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	449.23745	896.460347	-1.1121	-0.00049962	1.4076	0.00063236	0.29548	0.00013274	449.2378564671399	49.41	0.9368	49.484	49.204	50.141	0.074196	-0.032691	0.0011288	NaN	62.107	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201770	+		6997	33549	4446	4464							0.007975056264740488
DKGQKWLQY	9	Unmodified	_DKGQKWLQY_					0	0	0			REV__nc|ENSG00000293552|Q9H3R0-3|KDM4C	REV__nc|ENSG00000293552|Q9H3R0-3|KDM4C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.2855224609375	2	583.303655	1164.59276	-0.92173	-0.00053765	4.4797	0.002613	3.5579	0.0020754	583.3064330413209	55.433	0.16576	55.217	55.136	55.301	-0.21551					8	4	2	0	0	0	0.024495	1	5925	5925		26.693	0	1	156150	+		6998	21653	4447	4465	8582	8582					0.017045303632812647
DKGRPRSRKI	10	Unmodified	_DKGRPRSRKI_					0	0	0		ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant;nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19;ENST00000505791.5_2_5:128796160-128862161:+|nuORF	ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.7251892089844	3	404.914305	1211.72109	0.88086	0.00035667	-0.74658	-0.0003023	0.13428	5.4372E-05	404.91393525109913	19.985	0.73358	19.985	19.735	20.468	0					27	14	3	0	0	0	0.03519	1	501	501		10.104	0	1	50075			6999	27	4448	4466	8583	8583					0.12369510397024897
DKGRQPGEV	9	Unmodified	_DKGRQPGEV_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.24237060546875	2	493.256705	984.498858	-0.25282	-0.0001247	-0.30236	-0.00014914	-0.55518	-0.00027385	493.25678011857474	49.16	0.73909	48.88	48.501	49.24	-0.27977					48	19	4	0	0	0	0.024457	1	4944	4944		21.96	0	1	334700			7000	10716	4449	4467	8584	8584					0.0059881126099980975
DKGVAINRLS	10	Unmodified	_DKGVAINRLS_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.746337890625	2	536.809105	1071.60366	-1.1038	-0.00059251	-0.83759	-0.00044963	-1.9414	-0.0010421	536.8092849085107	30.323	0.41325	30.145	29.953	30.366	-0.17818					13	9	2	0	0	0	0.03519	1	1897	1897		20.03	8.5195	1	60275	+		7001	21868	4450	4468	8585	8585					0.07071932737562747
DKGVAINRLS	10	Unmodified	_DKGVAINRLS_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.809105	1071.60366	-1.6232	-0.00087133	0.34161	0.00018338	-1.2816	-0.00068796	536.8091505562608	30.384	0.53749	30.384	30.096	30.634	0	0.12939	0.0002083	NaN	20.03	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73542	+		7002	21868	4450	4468							0.07071932737562747
DKGVAINRLS	10	Unmodified	_DKGVAINRLS_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.809105	1071.60366	-0.99519	-0.00053423	0.60364	0.00032404	-0.39155	-0.00021019	536.8091670281772	30.354	0.3743	30.363	30.164	30.538	0.0086708	0.10791	0.00048962	NaN	20.03	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89576	+		7003	21868	4450	4468							0.07071932737562747
DKGVAINRLS	10	Unmodified	_DKGVAINRLS_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.809105	1071.60366	-1.674	-0.00089862	0.55678	0.00029888	-1.1172	-0.00059973	536.8094208671253	30.115	0.45835	30.189	29.92	30.378	0.074314	-0.066117	0.00043931	NaN	20.03	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96924	+		7004	21868	4450	4468							0.07071932737562747
DKGVAINRLS	10	Unmodified	_DKGVAINRLS_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.809105	1071.60366	-0.68153	-0.00036585	-0.97147	-0.0005215	-1.653	-0.00088735	536.8084916028953	30.438	0.33545	30.194	29.948	30.284	-0.24415	-0.060893	-0.0012014	NaN	20.03	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54135	+		7005	21868	4450	4468							0.07071932737562747
DKGVIILGI	9	Unmodified	_DKGVIILGI_					0	0	0			REV__ENSG00000198843|ENST00000471696|SELENOT	REV__ENSG00000198843|ENST00000471696|SELENOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2882995605469	2	464.29731	926.580068	0.1901	8.8264E-05	0.19248	8.9368E-05	0.38258	0.00017763	464.2972239319311	61.905	0.7473	61.679	61.336	62.084	-0.22663					35	19	2	0	0	0	0.024323	1	7164	7164		20.947	0	1	2287600	+		7006	28496	4451	4469	8586	8586					0.1138411897103424
DKHFQSYCL	9	Unmodified	_DKHFQSYCL_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7779541015625	2	570.760766	1139.50698	-0.27553	-0.00015726	-3.6675	-0.0020933	-3.9431	-0.0022505	570.7585052122614	32.179	0.3849	32.021	31.819	32.204	-0.15772					15	8	2	0	0	0	0.024541	1	2199	2199		29.17	15.716	1	98126			7007	8804	4452	4470	8587	8587					-0.05719377813875326
DKHGHLCEV	9	Unmodified	_DKHGHLCEV_					0	0	0		ENSG00000179938|ENST00000567927|GOLGA8J	ENSG00000179938|ENST00000567927|GOLGA8J	ENSG00000179938|ENST00000567927|GOLGA8J	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7928466796875	2	519.245283	1036.47601	-0.45991	-0.0002388	-3.9432	-0.0020475	-4.4031	-0.0022863	519.2430790683428	64.326	0.47696	64.063	63.864	64.341	-0.2626					17	12	2	0	0	0	0.023061	1	7555	7555		69.628	0	1	151700			7008	8944	4453	4471	8588	8588					-0.04076531128134775
DKHGMLPQL	9	Unmodified	_DKHGMLPQL_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7885131835938	2	519.773677	1037.5328	-0.38736	-0.00020134	-2.7133	-0.0014103	-3.1006	-0.0016116	519.7720238251161	53.834	0.63348	53.834	53.545	54.179	0					30	17	2	0	0	0	0.024381	1	5806	5806		55.504	22.692	1	452450	+		7009	23576	4454	4472	8589	8589					0.015535164283846825
DKHRNSFLGF	10	Unmodified	_DKHRNSFLGF_					0	0	0			REV__ENST00000254846.9_1_17:7757062-7757251:+|nuORF	REV__ENST00000254846.9_1_17:7757062-7757251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.8875732421875	3	407.543878	1219.60981	0.038783	1.5806E-05	-3.9434	-0.0016071	-3.9046	-0.0015913	407.5421650252271	27.355	0.67822	27.113	26.701	27.379	-0.24217					19	15	2	0	0	0	0.03519	1	1531	1531		19.263	6.3052	1	74025	+		7010	29532	4455	4473	8590	8590					0.008784509690713094
DKHSQGDVE	9	Unmodified	_DKHSQGDVE_					0	0	0		ZNF616|p.Q125K|1|0.27|ENSG00000204611|chr19:52116791-52116791|G/T|missense_variant	ZNF616|p.Q125K|1|0.27|ENSG00000204611|chr19:52116791-52116791|G/T|missense_variant	ZNF616|p.Q125K|1|0.27|ENSG00000204611|chr19:52116791-52116791|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8236083984375	2	507.727978	1013.4414	-0.94329	-0.00047893	-2.6653	-0.0013533	-3.6086	-0.0018322	507.7265013794054	60.895	0.47668	60.641	60.336	60.813	-0.25373					16	11	2	0	0	0	0.024209	1	6733	6733		56.721	0	1	165840			7011	38202	4456	4474	8591	8591					-0.06478075735230959
DKHTGLVK	8	Unmodified	_DKHTGLVK_					0	0	0			REV__ENST00000463785.1_1_22:46746261-46748489:+|nuORF	REV__ENST00000463785.1_1_22:46746261-46748489:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7532958984375	2	449.261259	896.507966	-0.26184	-0.00011764	-0.79139	-0.00035554	-1.0532	-0.00047318	449.2605881386442	40.062	0.26481	39.95	39.83	40.095	-0.11223					10	6	2	0	0	0	0.027866	1	3479	3479		40.778	27.324	1	72229	+		7012	32946	4457	4475	8592	8592					0.055572046173210765
DKHTGLVL	8	Unmodified	_DKHTGLVL_					0	0	0		nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE;nc|ENSG00000179397|Q5SY80-3|CATSPERE;ENST00000473875.5_1_1:244724068-244773670:+|nuORF	nc|ENSG00000179397|Q5SY80-2|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2354431152344	2	441.75581	881.497067	-0.36311	-0.00016041	-0.067132	-2.9656E-05	-0.43025	-0.00019006	441.7558486529077	34.037	0.63934	34.087	33.765	34.404	0.050251					30	15	3	0	0	0	0.027866	1	2428	2428		8.2313	0	1	271800			7013	8895	4458	4476	8593	8593					0.05157802243024889
DKIAKILPD	9	Unmodified	_DKIAKILPD_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2969665527344	2	506.8055	1011.59645	-0.2561	-0.00012979	-0.10982	-5.566E-05	-0.36593	-0.00018545	506.8050105270511	57.991	0.42554	58.082	57.908	58.333	0.091217					15	11	2	0	0	0	0.024511	1	6513	6513		19.104	11.413	1	305850	+		7014	19175	4459	4477	8594	8594					0.0911120013714708
DKIAQNLD	8	Unmodified	_DKIAQNLD_					0	0	0		nc|ENSG00000133063|Q13231-2|CHIT1;nc|ENSG00000133063|Q13231-3|CHIT1;nc|ENSG00000133063|Q13231-4|CHIT1;ENSG00000133063|ENST00000367229|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.279052734375	2	458.740357	915.46616	-0.9359	-0.00042934	0.97342	0.00044655	0.037518	1.7211E-05	458.74039215817646	44.253	0.2038	44.033	43.972	44.176	-0.21939					7	5	2	0	0	0	0.027866	1	4122	4122		6.7355	0	1	73296			7015	4676	4460	4478	8595	8595					0.005046041381433497
DKIDDEWCNK	10	Unmodified	_DKIDDEWCNK_					0	0	0			REV__nc|ENSG00000148516|P37275-4|ZEB1	REV__nc|ENSG00000148516|P37275-4|ZEB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.24578857421875	3	422.52041	1264.5394	-1.2536	-0.00052968	-3.6666	-0.0015492	-4.9202	-0.0020789	422.51885007191845	30.627	0.45358	30.627	30.384	30.838	0					18	10	2	0	0	0	0.03519	1	1993	1993		14.086	6.6863	1	47357	+		7016	36771	4461	4479	8596	8596					-0.08228635201544421
DKIEDIAML	9	Unmodified	_DKIEDIAML_					0	0	0		MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2969970703125	2	524.273175	1046.5318	-0.98779	-0.00051787	-1.8286	-0.00095871	-2.8164	-0.0014766	524.2720227690041	103.24	0.9395	103.24	102.96	103.9	0					40	22	2	0	0	0	0.016885	1	13227	13227		118.74	17.142	1	256740			7017	18007	4462	4480	8597	8597					0.01039257268826077
DKIEDIAML	9	Unmodified	_DKIEDIAML_					0	0	0		MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.273175	1046.5318	0.095663	5.0153E-05	-3.1651	-0.0016594	-3.0694	-0.0016092	524.2713895554713	103.02	0.31866	102.9	102.83	103.14	-0.12724	-0.22061	-0.00062388	NaN	118.74	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69011			7018	18007	4462	4480							0.01039257268826077
DKIEDIAML	9	Unmodified	_DKIEDIAML_					0	0	0		MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MYH6|p.M90I|1|0.19|ENSG00000197616|chr14:23405702-23405702|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.273175	1046.5318	-0.10973	-5.7529E-05	-3.3265	-0.001744	-3.4363	-0.0018015	524.2712099203258	103.09	0.50018	102.97	102.79	103.29	-0.12783	-0.15	-0.00079316	NaN	118.74	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78206			7019	18007	4462	4480							0.01039257268826077
DKIEHKFAL	9	Unmodified	_DKIEHKFAL_					0	0	0			REV__ENSG00000205810|ENST00000396439|KLRC3;REV__ENSG00000134545|ENST00000359151|KLRC1	REV__ENSG00000205810|ENST00000396439|KLRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7972412109375	2	550.808574	1099.60259	-0.98924	-0.00054488	1.8445	0.0010159	0.85521	0.00047106	550.8093657084045	57.611	0.54704	57.706	57.575	58.122	0.095306					25	14	2	0	0	0	0.024288	1	6414	6414		52.937	6.9645	1	1855100	+		7020	28691;23461	4463	4481	8598	8598					0.056777183686335775
DKIEIELVD	9	Unmodified	_DKIEIELVD_					0	0	0			REV__ENSG00000138411|ENST00000644978|HECW2	REV__ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8222045898438	2	537.289879	1072.56521	-0.82706	-0.00044437	1.7378	0.0009337	0.91073	0.00048933	537.2906530170884	45.902	0.47933	45.954	45.724	46.203	0.051395					20	13	2	0	0	0	0.024477	1	4436	4436		14.865	3.3539	1	97514	+		7021	23852	4464	4482	8599	8599					0.03182582312388149
DKIELYSNI	9	Unmodified	_DKIELYSNI_					0	0	0		ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2515869140625	2	547.790047	1093.56554	-0.6221	-0.00034078	0.088485	4.8471E-05	-0.53361	-0.00029231	547.7900389351918	52.258	0.81191	52.258	51.977	52.789	0					52	20	5	0	0	0	0.024428	1	5585	5585		47.96	12.807	1	1734800			7022	1398	4465	4483	8600	8600					0.022500020322468117
DKIENDTFIF	10	Unmodified	_DKIENDTFIF_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.1953430175781	3	414.539799	1240.59757	-0.53571	-0.00022207	-3.8596	-0.0016	-4.3953	-0.001822	414.53816070130955	42.097	0.68581	41.866	41.469	42.155	-0.23186					33	18	2	0	0	0	0.03519	1	3779	3779		30.569	9.5366	1	271660	+		7023	20082	4466	4484	8601	8601					-0.013106302846381368
DKIFEYDSPT	10	Unmodified	_DKIFEYDSPT_					0	0	0		nc|ENSG00000157168|Q02297-10|NRG1	nc|ENSG00000157168|Q02297-10|NRG1	nc|ENSG00000157168|Q02297-10|NRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	606.8326416015625	2	607.782418	1213.55028	-0.71901	-0.000437	-1.9534	-0.0011872	-2.6724	-0.0016242	607.7814060249694	54.488	0.41411	54.586	54.393	54.807	0.098015					19	11	2	0	0	0	0.03519	1	5873	5873		24.519	0.99649	1	184690			7024	18406	4467	4485	8602	8602					-0.04794909555630511
DKIFSICT	8	Unmodified	_DKIFSICT_					0	0	0			REV__ENST00000552128.2_1_12:71519116-71532942:-|nuORF	REV__ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.750732421875	2	463.736228	925.457904	-0.018335	-8.5027E-06	-1.127	-0.00052261	-1.1453	-0.00053112	463.7360294408041	42.522	0.29498	42.399	42.195	42.49	-0.12299					10	7	2	0	0	0	0.027866	1	3850	3850		3.1592	0	1	121210	+		7025	22925	4468	4486	8603	8603					-0.007806661028325834
DKIHGMTI	8	Unmodified	_DKIHGMTI_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.21990966796875	2	457.741845	913.469137	-0.20626	-9.4413E-05	-0.71915	-0.00032918	-0.92541	-0.0004236	457.7419533310934	40.412	0.47785	40.187	39.928	40.406	-0.225					28	12	3	0	0	0	0.027866	1	3495	3495		29.15	0	1	913580			7026	4321	4469	4487	8604	8604					0.008941559913068886
DKIIYKLI	8	Unmodified	_DKIIYKLI_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7619323730469	2	503.320786	1004.62702	-0.060108	-3.0254E-05	-0.010211	-5.1396E-06	-0.07032	-3.5393E-05	503.3206870144925	47.789	0.47368	47.602	47.389	47.863	-0.18684					22	12	2	0	0	0	0.027866	1	4710	4710		47.916	22.465	1	365280			7027	4326	4470	4488	8605	8605					0.12488978522173966
DKIKDRPL	8	Unmodified	_DKIKDRPL_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.77752685546875	2	492.795466	983.57638	0.29059	0.0001432	-0.78363	-0.00038617	-0.49304	-0.00024297	492.79467797949803	46.443	0.39359	46.443	46.378	46.772	0					15	10	2	0	0	0	0.027866	1	4600	4600		47.657	5.1829	1	103160	+		7028	27926	4471	4489	8606	8606					0.08393449197160407
DKIKKLRA	8	Unmodified	_DKIKKLRA_					0	0	0			REV__ENSG00000107815|ENST00000311916|TWNK	REV__ENSG00000107815|ENST00000311916|TWNK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3087158203125	2	486.321651	970.62875	-1.1242	-0.00054672	-1.9025	-0.00092522	-3.0267	-0.0014719	486.32090345419886	20.397	0.19429	20.397	20.274	20.468	0					5	3	2	0	0	0	0.027866	1	534	534		44.117	0	1	13792	+		7029	21688	4472	4490	8607	8607					0.14226032330782346
DKIKSLVD	8	Unmodified	_DKIKSLVD_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|40|3|sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|40|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2482604980469	2	459.26875	916.522947	0.51428	0.00023619	0.05916	2.717E-05	0.57344	0.00026336	459.26875326700866	71.289	1.5135	71.3	70.937	72.451	0.010735					52	39	2	0	0	0	0.027866	1	8511	8511		29.15	11.785	1	1205700	+		7030	36099	4473	4491	8608	8608					0.06134651694662807
DKILGFLID	9	Unmodified	_DKILGFLID_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7844848632812	2	517.30005	1032.58555	-1.3381	-0.00069219	1.1732	0.00060689	-0.16488	-8.5293E-05	517.3003653733252	93.325	1.588	93.185	92.96	94.548	-0.13995					45	36	2	0	0	0	0.024488	1	11561	11561		26.063	0	1	111100	+		7031	28616	4474	4492	8609	8609					0.07055797762859584
DKILGFLID	9	Unmodified	_DKILGFLID_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.30005	1032.58555	0.05168	2.6734E-05	0.10789	5.581E-05	0.15957	8.2544E-05	517.2997188421455	93.426	0.8709	93.282	92.914	93.785	-0.14411	-0.067577	-0.00073973	NaN	26.063	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127520	+		7032	28616	4474	4492							0.07055797762859584
DKILLVESI	9	Unmodified	_DKILLVESI_					0	0	0			REV__nc|ENSG00000226941|Q15415-2|RBMY1F	REV__nc|ENSG00000226941|Q15415-2|RBMY1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2608032226562	2	515.313158	1028.61176	-0.64378	-0.00033175	4.2912	0.0022113	3.6475	0.0018796	515.3139256294199	30.014	0.32468	30.022	29.88	30.205	0.0086708					12	7	2	0	0	0	0.02435	1	1891	1891		51.335	28.293	1	37514	+		7033	26400	4475	4493	8610	8610					0.098600669343341
DKILMLYF	8	Unmodified	_DKILMLYF_					0	0	0		ENST00000394885.7_1_15:77241588-77241771:+|nuORF	ENST00000394885.7_1_15:77241588-77241771:+|nuORF	ENST00000394885.7_1_15:77241588-77241771:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2274169921875	2	521.785721	1041.55689	-0.12049	-6.287E-05	2.6982	0.0014079	2.5777	0.001345	521.7872722351036	35.581	0.46906	35.369	35.115	35.584	-0.21246					26	11	3	0	0	0	0.027866	1	2721	2721		24.203	0	1	338270			7034	13499	4476	4494	8611	8611					0.03777356862065062
DKILSSRTV	9	Unmodified	_DKILSSRTV_					0	0	0		nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7548522949219	2	509.798206	1017.58186	-1.1623	-0.00059252	2.4119	0.0012296	1.2497	0.00063707	509.7989447092421	37.712	0.34682	37.629	37.396	37.743	-0.082516					16	9	2	0	0	0	0.024511	1	3047	3047		19.104	0	1	290390			7035	18544	4477	4495	8612	8612					0.07377127988991106
DKIMTSDEV	9	Unmodified	_DKIMTSDEV_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7928466796875	2	519.244615	1036.47468	0.79987	0.00041533	-3.7326	-0.0019381	-2.9327	-0.0015228	519.2426311664493	64.034	0.28524	64.034	63.917	64.203	0					11	7	2	0	0	0	0.023837	1	7537	7537		74.255	19.479	1	165300			7036	9241	4478	4496	8613	8613					-0.042102100075453563
DKIMTSDEV	9	Unmodified	_DKIMTSDEV_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7925415039062	2	519.244615	1036.47468	0.94467	0.00049051	-4.0574	-0.0021068	-3.1127	-0.0016163	519.2425490927126	64.078	0.39504	64.123	63.867	64.262	0.045502					14	10	2	0	0	0	0.024261	1	7452	7452		54.776	10.66	1	261470			7037	9241	4478	4496	8614	8614					-0.042102100075453563
DKINLPDFL	9	Unmodified	_DKINLPDFL_					0	0	0		ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.243408203125	2	537.795132	1073.57571	-0.58217	-0.00031309	3.2558	0.0017509	2.6736	0.0014379	537.7967528617949	55.642	0.63896	55.486	55.027	55.666	-0.15601					31	17	2	0	0	0	0.021816	1	6139	6139		107.01	21.847	1	1333000			7038	6640	4479	4497	8615	8615					0.04186609757448423
DKINLPDFL	9	Unmodified	_DKINLPDFL_					0	0	0		ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.795132	1073.57571	-0.47866	-0.00025742	-0.95071	-0.00051129	-1.4294	-0.00076871	537.7962391577225	55.695	0.41865	55.479	55.143	55.562	-0.21607	0.05597	-0.0046713	NaN	107.01	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175430			7039	6640	4479	4497							0.04186609757448423
DKIQQPDLRKL	11	Unmodified	_DKIQQPDLRKL_					0	0	0			REV__nc|ENSG00000138669|Q13237-2|PRKG2	REV__nc|ENSG00000138669|Q13237-2|PRKG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.93280029296875	3	451.933143	1352.7776	0.91985	0.00041571	-2.0117	-0.00090914	-1.0918	-0.00049343	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.044	1	12275	12275		26.75	0.68632	1	1435400	+		7040	23880	4480	4498	8616	8616					0.11532093442997393
DKIQQPDLRKL	11	Unmodified	_DKIQQPDLRKL_					0	0	0			REV__nc|ENSG00000138669|Q13237-2|PRKG2	REV__nc|ENSG00000138669|Q13237-2|PRKG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9327697753906	3	451.933143	1352.7776	0.95574	0.00043193	-1.8211	-0.00082301	-0.86535	-0.00039108	451.93215521600763	97.035	2.3592	96.912	95.552	97.912	-0.12368					183	54	5	0	0	0	1.0699	1	11989	11989		19.627	1.0959	1	477030	+		7041	23880	4480	4498	8617	8617					0.11532093442997393
DKIQQPDLRKL	11	Unmodified	_DKIQQPDLRKL_					0	0	0			REV__nc|ENSG00000138669|Q13237-2|PRKG2	REV__nc|ENSG00000138669|Q13237-2|PRKG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9327087402344	3	451.933143	1352.7776	-0.033263	-1.5033E-05	-1.0887	-0.00049204	-1.122	-0.00050707	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.044	1	12292	12292		26.75	4.9693	1	1141700	+		7042	23880	4480	4498	8618	8618					0.11532093442997393
DKIRIYVK	8	Unmodified	_DKIRIYVK_					0	0	0			REV__MGRN1-SNX29|1|fusion	REV__MGRN1-SNX29|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2875366210938	2	517.821484	1033.62842	-0.037524	-1.9431E-05	-1.1653	-0.00060342	-1.2028	-0.00062285	517.820086161214	49.558	0.48148	49.558	49.249	49.731	0					13	12	2	0	0	0	0.027866	1	5127	5127		17.365	5.1581	1	81924	+		7043	36378	4481	4499	8619	8619					0.11294612610936383
DKIRLYNV	8	Unmodified	_DKIRLYNV_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.25653076171875	2	510.795466	1019.57638	-1.2547	-0.00064088	0.82998	0.00042395	-0.42468	-0.00021693	510.79595308918977	37.854	0.34571	37.771	37.537	37.883	-0.082512					15	9	2	0	0	0	0.027866	1	3083	3083		23.042	0	1	189450			7044	8041	4482	4500	8620	8620					0.06737449197180467
DKIRLYNV	8	Unmodified	_DKIRLYNV_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2564392089844	2	510.795466	1019.57638	-1.4312	-0.00073107	-0.02206	-1.1268E-05	-1.4533	-0.00074234	510.7961799760801	37.993	0.44773	38.02	37.782	38.23	0.027279					24	12	3	0	0	0	0.027866	1	3066	3066		23.042	1.0826	1	161810			7045	8041	4482	4500	8621	8621					0.06737449197180467
DKISKKAVD	9	Unmodified	_DKISKKAVD_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.32122802734375	2	502.292756	1002.57096	1.5862	0.00079675	2.1993	0.0011047	3.7855	0.0019015	502.2936448128196	63.482	1.3003	63.536	63.233	64.533	0.054104					69	35	4	0	0	0	0.023239	1	7309	7309		64.207	11.271	1	4010300	+		7046	19428	4483	4501	8622	8622					0.06977725614706287
DKISRLLL	8	Unmodified	_DKISRLLL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2926940917969	2	479.30821	956.601866	0.11973	5.7388E-05	2.0552	0.00098508	2.175	0.0010425	479.3095840874492	78.231	0.25739	77.977	77.784	78.041	-0.25471					7	5	2	0	0	0	0.027866	1	9316	9316		24.203	15.971	1	28786	+		7047	26900	4484	4502	8623	8623					0.12182923719615246
DKISVKHKT	9	Unmodified	_DKISVKHKT_					0	0	0			REV__ENSG00000108506|ENST00000251334|INTS2	REV__ENSG00000108506|ENST00000251334|INTS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2747192382812	2	528.314023	1054.61349	-0.52729	-0.00027857	0.15997	8.4513E-05	-0.36732	-0.00019406	528.3141350172288	46.873	0.8428	46.72	46.172	47.015	-0.15301					66	22	4	0	0	0	0.024367	1	4675	4675		29.17	0	1	5853800	+		7048	21739	4485	4503	8624	8624					0.08837120742941806
DKITETGVEL	10	Unmodified	_DKITETGVEL_					0	0	0			REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.7940063476562	2	552.792786	1103.57102	0.11365	6.2828E-05	2.236	0.001236	2.3497	0.0012989	552.7939523428302	42.518	1.2137	42.518	42.154	43.367	0					107	33	4	0	0	0	0.69662	1	3926	3926		67.494	1.0644	1	5206000	+		7049	31856	4486	4504	8625	8625					0.02337680824052768
DKIYRRVI	8	Unmodified	_DKIYRRVI_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7855834960938	2	531.824558	1061.63456	-0.53561	-0.00028485	0.77087	0.00040997	0.23526	0.00012511	531.8250382601965	46.324	0.39093	46.324	46.021	46.412	0					24	10	3	0	0	0	0.027866	1	4525	4525		58.782	16.307	1	1303100	+		7050	22537	4487	4505	8626	8626					0.10621130842469029
DKIYRRVI	8	Unmodified	_DKIYRRVI_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.785888671875	2	531.824558	1061.63456	-1.5059	-0.0008009	1.8032	0.00095897	0.29722	0.00015807	531.8254247938158	46.38	0.32055	46.229	45.989	46.31	-0.15156					20	8	3	0	0	0	0.027866	1	4532	4532		44.117	1.6423	1	1119600	+		7051	22537	4487	4505	8627	8627					0.10621130842469029
DKIYRRVI	8	Unmodified	_DKIYRRVI_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.824558	1061.63456	-0.51614	-0.0002745	0.56873	0.00030247	0.052591	2.7969E-05	531.8247679789545	46.695	0.68203	46.428	46.193	46.875	-0.26764	0.097743	-0.00074266	NaN	66.429	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440710	+		7052	22537	4487	4505							0.10621130842469029
DKIYRRVI	8	Unmodified	_DKIYRRVI_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.824558	1061.63456	-0.69884	-0.00037166	2.7193	0.0014462	2.0204	0.0010745	531.8264110207907	46.533	0.54642	46.339	46.165	46.712	-0.19387	0.0088748	0.0015447	NaN	66.429	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457910	+		7053	22537	4487	4505							0.10621130842469029
DKIYSNNKV	9	Unmodified	_DKIYSNNKV_					0	0	0			REV__ENSG00000182993|ENST00000330828|C12orf60	REV__ENSG00000182993|ENST00000330828|C12orf60	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.7887573242188	2	540.787838	1079.56112	-0.89353	-0.00048321	0.5095	0.00027553	-0.38403	-0.00020768	540.7879632465316	46.759	1.1329	46.606	46.309	47.441	-0.15301					74	30	4	0	0	0	0.247	2	4661	4647;4661		82.75	10.698	1	4258300	+		7054	27524	4488	4506	8628;8629	8629					0.024525376093151863
DKKCSVEKK	9	Unmodified	_DKKCSVEKK_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.27197265625	2	532.792066	1063.56958	-0.48772	-0.00025985	-1.6969	-0.00090409	-2.1846	-0.0011639	533.2933278204418	55.47	0.21496	55.314	55.227	55.442	-0.15601					7	5	2	0	0	0	0.024397	1	6109	6109		47.657	6.8792	1	256960			7055	2760	4489	4507	8630	8630					0.040337682542940456
DKKDLAHTPS	10	Unmodified	_DKKDLAHTPS_					0	0	0		ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK;ENST00000553636.1_1_14:99959014-99959269:+|nuORF;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK	ENSG00000090061|ENST00000389879|CCNK	ENSG00000090061|ENST00000389879|CCNK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7689819335938	2	556.290745	1110.56694	-0.77862	-0.00043314	2.2888	0.0012732	1.5102	0.00084011	556.2919622253556	38.253	0.18879	38.034	37.894	38.083	-0.21848					8	5	2	0	0	0	0.03519	1	3117	3117		45.972	18.09	1	434710			7056	1923	4490	4508	8631	8631					0.01607636120979805
DKKDLSLDL	9	Unmodified	_DKKDLSLDL_					0	0	0		nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8187255859375	2	523.790047	1045.56554	-1.1772	-0.0006166	0.61659	0.00032296	-0.5606	-0.00029364	523.7907280518529	54.648	0.47602	54.648	54.393	54.869	0					22	13	2	0	0	0	0.024288	1	5945	5945		52.937	6.9847	1	295910			7057	18373	4491	4509	8632	8632					0.04458002032242803
DKKFCQQL	8	Unmodified	_DKKFCQQL_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7851257324219	2	505.260402	1008.50625	0.50402	0.00025466	-0.14784	-7.4699E-05	0.35618	0.00017996	505.26019694307956	64.297	0.81304	64.342	63.867	64.68	0.045502					31	21	2	0	0	0	0.027866	1	7406	7406		53.351	3.3269	1	693630	+		7058	35120	4492	4510	8633	8633					0.0023382753705618597
DKKFCQQL	8	Unmodified	_DKKFCQQL_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.260402	1008.50625	0.27535	0.00013912	0.32561	0.00016452	0.60095	0.00030364	505.2603113454703	64.344	0.55508	64.344	64.062	64.617	0	0.013044	-0.00036465	NaN	44.117	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691360	+		7059	35120	4492	4510							0.0023382753705618597
DKKFCQQL	8	Unmodified	_DKKFCQQL_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.260402	1008.50625	-0.89939	-0.00045443	1.2787	0.00064608	0.37932	0.00019165	505.26094042460267	64.573	0.75221	64.311	64.083	64.835	-0.2626	-0.020432	0.00059849	NaN	44.117	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	670810	+		7060	35120	4492	4510							0.0023382753705618597
DKKFCQQL	8	Unmodified	_DKKFCQQL_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.260402	1008.50625	-0.3398	-0.00017169	1.2765	0.00064494	0.93666	0.00047325	505.2607748196444	64.567	0.43088	64.332	64.059	64.49	-0.2345	0.0011227	0.00059621	NaN	44.117	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122070	+		7061	35120	4492	4510							0.0023382753705618597
DKKFCQQL	8	Unmodified	_DKKFCQQL_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.260402	1008.50625	-0.29878	-0.00015096	1.1195	0.00056563	0.8207	0.00041467	505.26051947076735	64.493	0.43416	64.291	64.105	64.539	-0.20254	-0.040457	0.00043757	NaN	44.117	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137570	+		7062	35120	4492	4510							0.0023382753705618597
DKKFCQQL	8	Unmodified	_DKKFCQQL_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.260402	1008.50625	-0.74299	-0.0003754	1.7675	0.00089306	1.0245	0.00051766	505.26123316539616	64.622	0.54551	64.366	64.076	64.621	-0.25563	0.035475	0.0010925	NaN	44.117	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221880	+		7063	35120	4492	4510							0.0023382753705618597
DKKGKIVDA	9	Unmodified	_DKKGKIVDA_					0	0	0		nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	nc|ENSG00000093010|P21964-2|COMT	nc|ENSG00000093010|P21964-2|COMT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7569885253906	2	487.287474	972.560395	0.28157	0.0001372	-0.32594	-0.00015883	-0.044369	-2.1621E-05	487.28719427006104	37.253	0.50749	37.044	36.765	37.273	-0.2092					25	12	3	0	0	0	0.024344	1	2982	2982		37.812	0	1	1021700			7064	2004	4493	4511	8634	8634					0.0730174296027144
DKKIAILGFA	10	Unmodified	_DKKIAILGFA_					0	0	0		nc|ENSG00000109814|O60701-3|UGDH;nc|ENSG00000109814|O60701-2|UGDH;RPL9-UGDH|2|fusion;ENSG00000109814|ENST00000316423|UGDH;RPL9-UGDH|1|fusion	nc|ENSG00000109814|O60701-3|UGDH	nc|ENSG00000109814|O60701-3|UGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3270263671875	2	538.329142	1074.64373	-0.74783	-0.00040258	-3.1387	-0.0016897	-3.8866	-0.0020923	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.1166	1	12330	12330		30.504	5.9844	1	21993000			7065	3000	4494	4512	8635	8635					0.10939479408148145
DKKIFRLD	8	Unmodified	_DKKIFRLD_					0	0	0			REV__ENSG00000178567|ENST00000322716|EPM2AIP1	REV__ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.78369140625	2	517.803291	1033.59203	-1.1217	-0.00058082	-0.88736	-0.00045948	-2.0091	-0.0010403	517.8023394627337	34.116	0.36135	34.166	34.005	34.367	0.050255					13	8	2	0	0	0	0.027866	1	2456	2456		6.3127	0	1	167410	+		7066	27191	4495	4513	8636	8636					0.07657735714224145
DKKIGRKAL	9	Unmodified	_DKKIGRKAL_					0	0	0		ENSG00000273540|ENST00000614907|AGBL1;nc|ENSG00000273540|Q96MI9|AGBL1	ENSG00000273540|ENST00000614907|AGBL1	ENSG00000273540|ENST00000614907|AGBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.307861328125	2	514.832383	1027.65021	-1.0188	-0.00052449	2.6789	0.0013792	1.6601	0.00085468	514.8342483515542	62.814	0.28717	62.814	62.651	62.938	0					10	6	2	0	0	0	0.024374	1	7302	7302		32.812	15.447	1	94396			7067	11020	4496	4514	8637	8637					0.13749417359508698
DKKKNLALL	9	Unmodified	_DKKKNLALL_					0	0	0		nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1;ENST00000534266.6_2_11:10649299-10673853:-|nuORF	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8347778320312	2	521.834591	1041.65463	-0.6794	-0.00035454	0.21234	0.00011081	-0.46706	-0.00024373	521.8346325329472	69.245	1.0165	69.245	68.898	69.915	0					82	25	4	0	0	0	0.59099	1	8324	8324		53.351	1.0523	1	5249100			7068	1495	4497	4515	8638	8638					0.13546881782394848
DKKLKKPSV	9	Unmodified	_DKKLKKPSV_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.768310546875	2	521.834591	1041.65463	-0.39831	-0.00020785	-1.1905	-0.00062124	-1.5888	-0.00082909	521.8340336462854	56.021	0.65582	55.865	55.591	56.247	-0.15602					24	17	2	0	0	0	0.024319	1	6153	6153		56.721	0	1	232190	+		7069	27038	4498	4516	8639	8639					0.13546881782394848
DKKLTTLA	8	Unmodified	_DKKLTTLA_					0	0	0		UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant;ENSG00000163960|ENST00000296328|UBXN7	UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.6361389160156	2	445.271293	888.528032	-0.036388	-1.6203E-05	1.4786	0.00065836	1.4422	0.00064216	445.27186396040594	39.255	0.66127	39.255	38.868	39.529	0					26	18	2	0	0	0	0.027866	1	3322	3322		40.778	10.937	1	143320			7070	7182	4499	4517	8640	8640					0.07930955557287689
DKKMLKEEI	9	Unmodified	_DKKMLKEEI_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	567.3133544921875	2	567.315374	1132.6162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.228	1	61.228	60.728	61.728	0								0	0	0	0.03995	1	7079	7079		113.41	3.2917	1				7071	14380	4500	4518	8641	8641					0.055192080855931636
DKKNAVLII	9	Unmodified	_DKKNAVLII_					0	0	0			REV__ENSG00000143878|ENST00000272233|RHOB	REV__ENSG00000143878|ENST00000272233|RHOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.29742431640625	2	507.321317	1012.62808	0.35556	0.00018038	-0.70953	-0.00035996	-0.35397	-0.00017958	507.32070251677635	91.427	0.67596	91.438	91.114	91.79	0.011276					33	15	3	0	0	0	0.024397	1	11492	11492		39.253	0	1	246050	+		7072	24293	4501	4519	8642	8642					0.12227192891100458
DKKPRCLEG	9	Unmodified	_DKKPRCLEG_					0	0	0			REV__nc|ENSG00000151651|P78325-3|ADAM8	REV__nc|ENSG00000151651|P78325-3|ADAM8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.314453125	2	523.276583	1044.53861	-0.41543	-0.00021738	-2.8386	-0.0014854	-3.2541	-0.0017028	523.2750697794246	45.536	0.92067	45.436	45.154	46.075	-0.099445					45	25	3	0	0	0	0.024344	1	4397	4397		37.812	8.662	1	782370	+		7073	24785	4502	4520	8643	8643					0.018126149400586655
DKKPTPQRVIK	11	Unmodified	_DKKPTPQRVIK_					0	0	0		ENSG00000155729|ENST00000359878|KCTD18;nc|ENSG00000155729|Q6PI47-3|KCTD18	ENSG00000155729|ENST00000359878|KCTD18	ENSG00000155729|ENST00000359878|KCTD18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2735595703125	3	437.269866	1308.78777	0.058045	2.5381E-05	-4.3835	-0.0019168	-4.3254	-0.0018914	437.267890885218	52.196	1.3955	52.196	51.836	53.232	0					99	36	4	0	0	0	0.024757	1	5716	5716		15.337	0	1	833460			7074	6484	4503	4521	8644	8644					0.1457270116827658
DKKPWYGY	8	Unmodified	_DKKPWYGY_					0	0	0			REV__CACNA1S|p.R1547W|1|0.31|ENSG00000081248|chr1:201047144-201047144|G/A|missense_variant	REV__CACNA1S|p.R1547W|1|0.31|ENSG00000081248|chr1:201047144-201047144|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7705688476562	2	528.761092	1055.50763	-0.47294	-0.00025007	-1.3266	-0.00070145	-1.7995	-0.00095152	528.7601104949551	47.796	0.29655	47.698	47.52	47.817	-0.097553					11	7	2	0	0	0	0.027866	1	4716	4716		30.504	0	1	197300	+		7075	19234	4504	4522	8645	8645					-0.017902151025282365
DKKQRLQL	8	Unmodified	_DKKQRLQL_					0	0	0		ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.80224609375	2	514.81419	1027.61383	0.35576	0.00018315	2.5202	0.0012975	2.876	0.0014806	514.8149548610146	69.317	0.56152	69.024	68.825	69.386	-0.29292					19	14	2	0	0	0	0.027866	1	8295	8295		58.782	0	1	386920			7076	10006	4505	4523	8646	8646					0.10112540462819197
DKKRERRKKKY	11	Unmodified	_DKKRERRKKKY_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7745361328125	3	512.314469	1533.92158	-0.53608	-0.00027464	-3.3071	-0.0016943	-3.8432	-0.0019689	512.3121909795686	48.107	0.62361	48.01	47.667	48.291	-0.097553					34	16	3	0	0	0	0.024846	1	4709	4709		8.0344	1.7135	1	216950			7077	4045	4506	4524	8647	8647					0.17597359993828832
DKKRPETV	8	Unmodified	_DKKRPETV_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MSMS	OPSCC_40_ClassI_Rep-3	6	486.77716064453125	2	486.777274	971.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.855	1	41.625	41.125	42.125	-0.23029								0	0	0	0.42131	1	3709	3709		64.207	3.2353	1				7078	10060	4507	4525	8648	8648					0.05308572300475589
DKKRPVII	8	Unmodified	_DKKRPVII_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.78204345703125	2	484.816202	967.617851	-0.1591	-7.7133E-05	0.26386	0.00012792	0.10476	5.0791E-05	484.8162201912805	24.236	0.55271	24.061	23.873	24.425	-0.17484					21	12	3	0	0	0	0.027866	1	1050	1050		38.806	29.984	1	156240			7079	9435	4508	4526	8649	8649					0.13274629956515582
DKKSELLP	8	Unmodified	_DKKSELLP_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2867126464844	2	465.26875	928.522947	0.42932	0.00019975	1.8196	0.00084662	2.249	0.0010464	465.2685721167784	74.767	1.107	74.777	74.181	75.288	0.010376					53	26	4	0	0	0	0.027866	1	9149	9149		26.796	8.4717	1	348950			7080	4143	4509	4527	8650	8650					0.05582651694669494
DKKSIGVSI	9	Unmodified	_DKKSIGVSI_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.76385498046875	2	473.782025	945.549496	-0.2574	-0.00012195	1.4357	0.00068022	1.1783	0.00055827	473.7826280234491	34.878	1.0574	34.929	34.253	35.311	0.050255					42	27	2	0	0	0	0.024021	1	2586	2586		49.442	0	1	322630	+		7081	26525	4510	4528	8651	8651					0.07454340586002672
DKKTKFTK	8	Unmodified	_DKKTKFTK_					0	0	0		OCRL|p.I164Tfs*23|1|0.07|ENSG00000122126|chrX:129558683-129558684|-/C|frameshift_variant	OCRL|p.I164Tfs*23|1|0.07|ENSG00000122126|chrX:129558683-129558684|-/C|frameshift_variant	OCRL|p.I164Tfs*23|1|0.07|ENSG00000122126|chrX:129558683-129558684|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.27099609375	2	498.297842	994.581131	-0.16286	-8.1152E-05	0.57088	0.00028447	0.40802	0.00020332	498.297763142274	62.014	0.85845	61.787	61.261	62.119	-0.22663					92	22	6	0	0	0	0.027866	1	7198	7198		30.504	10.022	1	3722200			7082	18902	4511	4529	8652	8652					0.08362333339948691
DKKTWGLLA	9	Unmodified	_DKKTWGLLA_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.287353515625	2	516.297842	1030.58113	0.090985	4.6975E-05	2.7425	0.001416	2.8335	0.0014629	516.8013251813861	49.807	0.44378	49.527	49.359	49.802	-0.27977					15	11	2	0	0	0	0.024541	1	5011	5011		26.693	13.734	1	230830	+		7083	28501	4512	4530	8653	8653					0.06706333339957382
DKKTWGLLA	9	Unmodified	_DKKTWGLLA_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.297842	1030.58113	-0.44359	-0.00022902	-2.056	-0.0010615	-2.4996	-0.0012905	516.2977238904652	49.839	0.42213	49.839	49.694	50.116	0	0.1562	-0.0028266	NaN	37.812	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151630	+		7084	28501	4512	4530							0.06706333339957382
DKKVRRLL	8	Unmodified	_DKKVRRLL_					0	0	0			REV__nc|ENSG00000173575|O14647-2|CHD2	REV__nc|ENSG00000173575|O14647-2|CHD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7894287109375	2	514.340375	1026.6662	-0.40962	-0.00021068	-4.0963	-0.0021069	-4.5059	-0.0023176	514.3382888247833	61.623	0.19079	61.623	61.529	61.72	0					6	4	2	0	0	0	0.027866	1	7149	7149		25.45	4.5032	1	65921	+		7085	26786	4513	4531	8654	8654					0.15393123596413716
DKLALGKTL	9	Unmodified	_DKLALGKTL_					0	0	0		ENSG00000280090|ENST00000356130|OR8B4	ENSG00000280090|ENST00000356130|OR8B4	ENSG00000280090|ENST00000356130|OR8B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7865905761719	2	479.800217	957.585882	-0.27213	-0.00013057	1.3112	0.00062909	1.039	0.00049853	479.8006939841015	25.194	0.46604	25.023	24.781	25.247	-0.17078					19	10	2	0	0	0	0.024344	1	1147	1147		45.972	0	1	102080			7086	11076	4514	4532	8655	8655					0.1053921748269886
DKLANHKT	8	Unmodified	_DKLANHKT_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7972412109375	2	463.756341	925.498129	-0.47042	-0.00021816	-1.5437	-0.0007159	-2.0141	-0.00093406	463.7553648412177	32.129	0.51068	32.129	31.829	32.34	0					18	12	2	0	0	0	0.027866	1	2229	2229		29.15	4.9468	1	145190	+		7087	28526	4515	4533	8656	8656					0.03240016611948704
DKLANHKT	8	Unmodified	_DKLANHKT_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7971496582031	2	463.756341	925.498129	-0.64614	-0.00029965	-0.71321	-0.00033076	-1.3594	-0.00063041	463.7557441211687	32.601	0.4479	32.601	32.379	32.827	0					20	11	2	0	0	0	0.027866	1	2253	2253		29.15	0	1	75661	+		7088	28526	4515	4533	8657	8657					0.03240016611948704
DKLANSCMAGW	11	Oxidation (M)	_DKLANSCM(Oxidation (M))AGW_		DKLANSCM(1)AGW		DKLANSCM(67)AGW	0	0	1			REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	404.510969	1210.51108	0.5796	0.00023445	-0.44548	-0.0001802	0.13412	5.4253E-05	404.5108205149643	32.083	1.0077	31.846	31.489	32.497	-0.23667					68	23	4	0	0	0	0.6477	3	2177	2167;2177;2188		66.92	16.292	1	5886800	+		7089	33639	4516	4534	8658;8659;8660	8659		918			-0.08575656382481611
DKLANSCMAGW	11	Oxidation (M)	_DKLANSCM(Oxidation (M))AGW_		DKLANSCM(1)AGW		DKLANSCM(59)AGW	0	0	1			REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.5111999511719	3	404.510969	1210.51108	0.99008	0.0004005	-1.1693	-0.00047298	-0.17918	-7.2478E-05	404.5106603150283	32.072	1.5129	31.88	31.472	32.985	-0.19261					101	35	5	0	0	0	0.78452	2	2181	2170;2181		58.63	9.1638	1	5650200	+		7090	33639	4516	4534	8661;8662	8662		918			-0.08575656382481611
DKLANSCMAGW	11	Oxidation (M)	_DKLANSCM(Oxidation (M))AGW_		DKLANSCM(1)AGW		DKLANSCM(59)AGW	0	0	1			REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.51123046875	3	404.510969	1210.51108	-0.57769	-0.00023368	0.2749	0.0001112	-0.30279	-0.00012248	404.51126135525834	31.999	1.1152	31.841	31.489	32.605	-0.15772					91	26	7	0	0	0	0.78452	1	2169	2169		58.63	12.173	1	6431900	+		7091	33639	4516	4534	8663	8663		918			-0.08575656382481611
DKLDDENNL	9	Unmodified	_DKLDDENNL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8244018554688	2	538.248743	1074.48293	-0.96515	-0.00051949	-0.25061	-0.00013489	-1.2158	-0.00065438	538.2479082066426	48.178	0.68639	48.178	48.003	48.69	0					27	19	3	0	0	0	0.024337	1	4915	4915		67.494	25.098	1	195050	+		7092	27671	4517	4535	8664	8664					-0.05132939766576783
DKLDLSKSD	9	Unmodified	_DKLDLSKSD_					0	0	0			REV__nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	REV__nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8443298339844	2	510.764029	1019.5135	0.07023	3.5871E-05	3.3732	0.0017229	3.4435	0.0017588	511.2665977648895	76.156	0.31324	76.168	76.051	76.365	0.011635					12	7	2	0	0	0	0.024511	1	9323	9323		25.574	0	1	115000	+		7093	20083	4518	4536	8665	8665					0.004528386184915689
DKLDNEQEV	9	Unmodified	_DKLDNEQEV_					0	0	0			REV__SERPINI1|p.I301N|1|0.23|ENSG00000163536|chr3:167807264-167807264|T/A|missense_variant	REV__SERPINI1|p.I301N|1|0.23|ENSG00000163536|chr3:167807264-167807264|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2830810546875	2	545.256568	1088.49858	0.094174	5.1349E-05	-2.4326	-0.0013264	-2.3385	-0.0012751	545.2565520984281	51.163	0.53036	50.886	50.665	51.195	-0.27643					26	13	4	0	0	0	0.024344	1	5277	5277		30.318	8.3578	1	809030	+		7094	37477	4519	4537	8666	8666					-0.042126532495103675
DKLEELRLLL	10	Unmodified	_DKLEELRLLL_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.240478515625	3	414.586972	1240.73909	0.063377	2.6275E-05	3.5034	0.0014525	3.5668	0.0014787	414.5882372494428	33.684	0.576	33.684	33.417	33.993	0.00013351					21	14	3	0	0	0	0.03519	1	2486	2486		20.837	0	1	58475	+		7095	22001	4520	4538	8667	8667					0.1283478780853784
DKLELELVL	9	Unmodified	_DKLELELVL_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.5584106445312	2	536.31844	1070.62233	-1.4534	-0.00077951	-0.96133	-0.00051558	-2.4148	-0.0012951	536.317783179308	35.21	0.41032	35.188	34.976	35.386	-0.021767					17	10	2	0	0	0	0.024405	1	2692	2692		20.947	0	1	110320			7096	6738	4521	4539	8668	8668					0.08984049588752896
DKLEQEGIIA	10	Unmodified	_DKLEQEGIIA_					0	0	0			REV__nc|ENSG00000170445|P12081-3|HARS1	REV__nc|ENSG00000170445|P12081-3|HARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.738525390625	2	558.300778	1114.587	-0.42039	-0.0002347	-4.0491	-0.0022606	-4.4695	-0.0024953	558.2981893135347	60.627	2.0083	60.627	59.711	61.72	0					77	53	2	0	0	0	0.03519	1	7010	7010		43.651	1.2547	1	544540	+		7097	26471	4522	4540	8669	8669					0.03429387060964473
DKLFDKATLY	10	Unmodified	_DKLFDKATLY_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	607.7572021484375	2	607.326796	1212.63904	-0.67583	-0.00041045	4.2359	0.0025726	3.56	0.0021621	607.3291644752248	52.609	1.5644	52.35	51.77	53.335	-0.25839					77	40	3	0	0	0	0.03519	1	5411	5411		44.377	0	1	387890	+		7098	22489	4523	4541	8670	8670					0.04122550474698983
DKLFDMLLD	9	Oxidation (M)	_DKLFDM(Oxidation (M))LLD_		DKLFDM(1)LLD		DKLFDM(70)LLD	0	0	1		chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2764282226562	2	563.278457	1124.54236	0.20952	0.00011802	-3.7569	-0.0021162	-3.5473	-0.0019981	563.2764196630745	81.846	2.6296	81.653	81.05	83.679	-0.19334					207	61	5	0	0	0	0.34489	1	9900	9900		69.628	7.5202	1	5941100			7099	379	4524	4542	8671	8671		7			-0.014927600767578042
DKLFNTGHKQI	11	Unmodified	_DKLFNTGHKQI_					0	0	0			REV__nc|ENSG00000075651|Q13393-4|PLD1	REV__nc|ENSG00000075651|Q13393-4|PLD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.2364501953125	3	434.238455	1299.69353	0.044825	1.9465E-05	-2.9618	-0.0012861	-2.9169	-0.0012666	434.2376145296231	72.85	1.8799	72.585	71.881	73.761	-0.26479					75	45	3	0	0	0	1.017	1	8552	8552		33.039	2.4705	1	591720	+		7100	36471	4525	4543	8672	8672					0.055675623461411305
DKLFQNPSL	9	Unmodified	_DKLFQNPSL_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.763671875	2	531.284931	1060.55531	-0.70093	-0.00037239	0.53734	0.00028548	-0.16359	-8.6912E-05	531.2853286397307	81.632	0.72219	81.49	81.275	81.997	-0.14248					22	16	2	0	0	0	0.024435	1	9847	9847		50.034	5.6563	1	289870	+		7101	20332	4526	4544	8673	8673					0.02745439097657254
DKLHAIND	8	Unmodified	_DKLHAIND_					0	0	0			REV__nc|ENSG00000133069|O75069-3|TMCC2	REV__nc|ENSG00000133069|O75069-3|TMCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7972412109375	2	463.240524	924.466495	-0.57356	-0.0002657	2.2826	0.0010574	1.709	0.00079169	463.2411970191551	32.465	0.56693	32.465	32.186	32.753	0					21	14	2	0	0	0	0.027866	1	2229	2229		26.693	0	1	102770	+		7102	23345	4527	4545	8674	8674					0.0012402385798395699
DKLHRHISI	9	Unmodified	_DKLHRHISI_					0	0	0			REV__ENST00000563271.5_1_16:67262538-67263013:+|nuORF	REV__ENST00000563271.5_1_16:67262538-67263013:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.270263671875	2	559.825089	1117.63563	-0.29047	-0.00016261	-3.5352	-0.0019791	-3.8256	-0.0021417	559.8231589876632	50.389	1.2009	50.238	49.52	50.721	-0.1512					50	34	2	0	0	0	0.024466	1	5146	5146		31.53	0	1	249210	+		7103	35218	4528	4546	8675	8675					0.08151345211376793
DKLHRHISI	9	Unmodified	_DKLHRHISI_					0	0	0			REV__ENST00000563271.5_1_16:67262538-67263013:+|nuORF	REV__ENST00000563271.5_1_16:67262538-67263013:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	559.825089	1117.63563	0.0035771	2.0025E-06	-3.5349	-0.0019789	-3.5313	-0.0019769	559.8230624497655	50.181	0.86538	50.262	49.81	50.676	0.080994	0.012077	1.3822E-07	NaN	16.717	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282320	+		7104	35218	4528	4546							0.08151345211376793
DKLHTKLW	8	Unmodified	_DKLHTKLW_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.77294921875	2	520.798009	1039.58147	0.11641	6.0626E-05	0.98524	0.00051311	1.1016	0.00057374	521.3001286057674	52.223	0.49141	52.039	51.741	52.233	-0.18405					21	12	2	0	0	0	0.027866	1	5429	5429		10.265	6.8552	1	215440	+		7105	27924	4529	4547	8676	8676					0.06325753059786621
DKLIKVFSL	9	Unmodified	_DKLIKVFSL_					0	0	0			REV__ENSG00000100365|ENST00000248899|NCF4	REV__ENSG00000100365|ENST00000248899|NCF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7860107421875	2	531.831517	1061.64848	-0.37093	-0.00019727	-2.9217	-0.0015539	-3.2927	-0.0017511	531.8290129774825	46.373	0.77102	46.424	46.063	46.834	0.051395					44	21	3	0	0	0	0.023454	1	4475	4475		71.877	13.096	1	1181600	+		7106	21103	4530	4548	8677	8677					0.12012363550911687
DKLINNLEV	9	Unmodified	_DKLINNLEV_					0	0	0		ENSG00000102349|ENST00000468660|KLF8;nc|ENSG00000102349|O95600-3|KLF8;nc|ENSG00000102349|O95600-5|KLF8	ENSG00000102349|ENST00000468660|KLF8	ENSG00000102349|ENST00000468660|KLF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2979736328125	2	529.298039	1056.58152	-0.73882	-0.00039106	-0.50571	-0.00026767	-1.2445	-0.00065873	529.2975257844018	52.092	1.3008	52.092	51.6	52.901	0					79	29	4	0	0	0	0.077175	1	5576	5576		118.74	8.6232	1	9186100			7107	2403	4531	4549	8678	8678					0.0554970826913177
DKLINNLEV	9	Unmodified	_DKLINNLEV_					0	0	0		ENSG00000102349|ENST00000468660|KLF8;nc|ENSG00000102349|O95600-3|KLF8;nc|ENSG00000102349|O95600-5|KLF8	ENSG00000102349|ENST00000468660|KLF8	ENSG00000102349|ENST00000468660|KLF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.298095703125	2	529.298039	1056.58152	-0.77065	-0.0004079	-0.83744	-0.00044326	-1.6081	-0.00085116	529.297329750578	51.968	1.5576	52.06	51.344	52.902	0.091942					86	37	4	0	0	0	0.077175	1	5476	5476		118.74	8.6232	1	8195200			7108	2403	4531	4549	8679	8679					0.0554970826913177
DKLIVEESS	9	Unmodified	_DKLIVEESS_					0	0	0			REV__THEM4|p.P147Tfs*15|1|0.24|ENSG00000159445|chr1:151889222-151889223|-/C|frameshift_variant	REV__THEM4|p.P147Tfs*15|1|0.24|ENSG00000159445|chr1:151889222-151889223|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.757080078125	2	510.266404	1018.51826	-0.58003	-0.00029597	-3.4374	-0.001754	-4.0174	-0.00205	510.7683770617321	34.702	0.20017	34.686	34.557	34.757	-0.016006					6	4	2	0	0	0	0.024367	1	2583	2583		52.937	10.462	1	39894	+		7109	25257	4532	4550	8680	8680					0.009737227612504284
DKLKEYLSV	9	Unmodified	_DKLKEYLSV_					0	0	0		ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.8242797851562	2	547.808239	1093.60193	-0.4721	-0.00025862	0.70123	0.00038414	0.22914	0.00012552	547.8086373852918	41.789	0.46153	41.558	41.272	41.734	-0.23101					23	11	3	0	0	0	0.024466	1	3661	3661		31.53	7.3271	1	176390			7110	2870	4533	4551	8681	8681					0.05886878928936312
DKLKIMTTL	9	Unmodified	_DKLKIMTTL_					0	0	0			REV__nc|ENSG00000130783|Q6P9F0-2|CCDC62	REV__nc|ENSG00000130783|Q6P9F0-2|CCDC62	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.7976684570312	2	531.81501	1061.61547	0.53715	0.00028567	0.16778	8.9229E-05	0.70494	0.0003749	531.8161925950426	98.595	0.82218	98.458	98.19	99.012	-0.13626					26	18	2	0	0	0	0.024447	1	12250	12250		32.812	9.7699	1	96359	+		7111	23157	4534	4552	8682	8682					0.0871241343654674
DKLKKGVK	8	Unmodified	_DKLKKGVK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant;ENST00000484081.1_1_2:225370642-225376119:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.2198181152344	2	458.302927	914.591301	-0.51554	-0.00023627	0.68488	0.00031388	0.16935	7.7612E-05	458.3030710855565	40.463	0.58133	40.313	40.04	40.621	-0.1497					25	15	2	0	0	0	0.027866	1	3472	3472		18.324	6.8134	1	450150			7112	1039	4535	4553	8683	8683					0.1305894106518508
DKLKRNPR	8	Unmodified	_DKLKRNPR_					0	0	0		chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.29833984375	2	513.811982	1025.60941	-0.086018	-4.4197E-05	-3.1526	-0.0016199	-3.2387	-0.0016641	513.8102795006059	52.869	0.61659	52.722	52.406	53.023	-0.14723					22	15	2	0	0	0	0.027866	1	5642	5642		47.657	0	1	95317			7113	298	4536	4554	8684	8684					0.09763076039871521
DKLKRNPR	8	Unmodified	_DKLKRNPR_					0	0	0		chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.811982	1025.60941	-0.18998	-9.7615E-05	-5.3025	-0.0027245	-5.4925	-0.0028221	513.8092232438757	52.751	0.44189	52.624	52.391	52.833	-0.12705	-0.058326	-0.00011042	NaN	31.53	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225850			7114	298	4536	4554							0.09763076039871521
DKLKRNPR	8	Unmodified	_DKLKRNPR_					0	0	0		chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	chr10:104074231-104075501|171|190.26|0.49|8.6|-|2|TE_info:L2c,L2c_dup90081,L2,LINE,donor,+,104075501,104075696|COL17A1,None|4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.811982	1025.60941	0.58756	0.0003019	-5.5846	-0.0028694	-4.997	-0.0025675	513.808975917731	52.96	0.40012	52.702	52.482	52.882	-0.25838	0.019172	-0.00040031	NaN	31.53	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299600			7115	298	4536	4554							0.09763076039871521
DKLKYLFS	8	Unmodified	_DKLKYLFS_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.71533203125	2	507.286943	1012.55933	-0.061281	-3.1087E-05	-1.9911	-0.0010101	-2.0524	-0.0010412	507.28520603298665	33.907	0.5854	33.683	33.485	34.07	-0.22412					20	14	2	0	0	0	0.027866	1	2483	2483		19.36	0	1	180450	+		7116	37546	4537	4555	8685	8685					0.05355528591360326
DKLLACSTPEP	11	Unmodified	_DKLLACSTPEP_					0	0	0			REV__ENST00000578921.5_1_18:9859346-9859484:+|nuORF	REV__ENST00000578921.5_1_18:9859346-9859484:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	587.295654296875	2	587.294639	1172.57472	0.30555	0.00017945	0.57362	0.00033689	0.87917	0.00051633	587.2949552399939	73.978	2.1464	73.988	73.677	75.823	0.0096512					165	53	5	0	0	0	0.96309	1	9025	9025		45.022	2.6261	1	50901000	+		7117	35496	4538	4556	8686	8686					-0.004659726737372694
DKLLHIYY	8	Unmodified	_DKLLHIYY_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000083642|Q9NTI5-2|PDS5B	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2551879882812	2	532.792392	1063.57023	-0.19335	-0.00010302	-3.9962	-0.0021291	-4.1895	-0.0022321	532.7907896280609	52.348	1.0378	52.2	51.985	53.023	-0.14735					67	26	3	0	0	0	0.027866	1	5672	5672		44.531	0	1	2672700			7118	3893;1756	4539	4557	8687	8687					0.040989309656424666
DKLLIELSK	9	Unmodified	_DKLLIELSK_					0	0	0			REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF	REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8079833984375	2	529.826432	1057.63831	-0.77856	-0.0004125	-0.96091	-0.00050911	-1.7395	-0.00092161	529.8258055077647	73.545	0.38675	73.28	73.139	73.526	-0.26479					16	9	3	0	0	0	0.024466	1	8640	8640		18.262	1.5447	1	212860	+		7119	24447	4540	4558	8688	8688					0.1117975582562849
DKLLIFLAL	9	Unmodified	_DKLLIFLAL_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7987670898438	2	523.336436	1044.65832	0.71579	0.0003746	-0.19763	-0.00010343	0.51815	0.00027117	523.3359396762178	71.018	0.39206	70.804	70.651	71.043	-0.21425					17	8	3	0	0	0	0.024405	1	8303	8303		35.618	7.736	1	196070			7120	3323	4541	4559	8689	8689					0.1377755155624527
DKLLIFLAL	9	Unmodified	_DKLLIFLAL_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.336436	1044.65832	0.12936	6.7699E-05	-0.46007	-0.00024077	-0.33071	-0.00017307	523.3359945539835	70.972	0.56235	70.972	70.7	71.263	0	0.019198	-0.00012859	NaN	35.618	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285980			7121	3323	4541	4559							0.1377755155624527
DKLLIFLAL	9	Unmodified	_DKLLIFLAL_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.336436	1044.65832	-0.01962	-1.0268E-05	-0.19588	-0.00010251	-0.2155	-0.00011278	523.3361786573919	71.029	0.50323	71.04	70.854	71.358	0.010735	0.086966	0.00014793	NaN	35.618	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339750			7122	3323	4541	4559							0.1377755155624527
DKLLKLREL	9	Unmodified	_DKLLKLREL_					0	0	0		CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.L1401Yfs*3|1|0.8|ENSG00000119397|chr9:121154742-121154743|TG/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.3425903320312	2	564.360973	1126.70739	-1.425	-0.00080422	-1.5132	-0.00085399	-2.9382	-0.0016582	564.8623581832989	46.39	0.13641	46.238	46.174	46.31	-0.15157					5	3	2	0	0	0	0.021816	1	4556	4556		85.161	5.4482	1	119560			7123	464	4542	4560	8690	8690					0.14910839845242663
DKLLLGYSD	9	Unmodified	_DKLLLGYSD_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ZBTB20|p.P692Lfs*43|2|0.29|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2704467773438	2	512.27149	1022.52843	-0.15004	-7.6862E-05	-0.45289	-0.000232	-0.60293	-0.00030886	512.270910752159	104.19	1.4432	104.18	103.73	105.17	-0.0032196					89	40	3	0	0	0	0.82115	1	13288	13288		37.812	2.1932	1	318570			7124	9063	4543	4561	8691	8691					0.01806330486465413
DKLLNGILV	9	Unmodified	_DKLLNGILV_					0	0	0			REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2528076171875	2	492.808042	983.601532	-0.077333	-3.811E-05	-1.7701	-0.00087232	-1.8474	-0.00091043	492.8069909287311	55.636	0.44395	55.48	55.26	55.704	-0.15601					17	11	2	0	0	0	0.024477	1	6148	6148		35.618	7.364	1	132750	+		7125	36514	4544	4562	8692	8692					0.10907503999749224
DKLLPAEW	8	Unmodified	_DKLLPAEW_					0	0	0			REV__ENST00000460006.5_1_20:5177814-5177943:+|nuORF	REV__ENST00000460006.5_1_20:5177814-5177943:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29034423828125	2	486.263468	970.512382	-0.49076	-0.00023864	-0.55362	-0.00026921	-1.0444	-0.00050784	486.2632654623256	27.521	0.33105	27.508	27.314	27.645	-0.012981					16	8	3	0	0	0	0.027866	1	1502	1502		31.955	0	1	144610	+		7126	32839	4545	4563	8693	8693					0.025946690402292916
DKLLPRLLNDL	11	Unmodified	_DKLLPRLLNDL_					0	0	0			REV__ENSG00000187736|ENST00000356853|NHEJ1	REV__ENSG00000187736|ENST00000356853|NHEJ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2454528808594	3	437.266122	1308.77654	0.43772	0.0001914	3.8108	0.0016663	4.2485	0.0018577	437.2677676083463	51.29	1.1665	51.29	50.74	51.906	0					105	32	4	0	0	0	0.024836	1	5529	5529		10.562	2.1546	1	782040	+		7127	27965	4546	4564	8694	8694					0.1344987907414179
DKLLRKVE	8	Unmodified	_DKLLRKVE_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7972106933594	2	500.811116	999.60768	-1.5959	-0.00079922	1.1237	0.00056276	-0.47217	-0.00023647	500.81159743921705	38.354	0.83333	38.381	38.127	38.96	0.027275					43	22	2	0	0	0	0.027866	1	3234	3234		18.324	0	1	3109600	+		7128	20191;37668	4547	4565	8695	8695					0.10786022231275183
DKLLSETCL	9	Unmodified	_DKLLSETCL_					0	0	0		nc|ENSG00000118263|O75840-3|KLF7;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;ENSG00000118263|ENST00000309446|KLF7	nc|ENSG00000118263|O75840-3|KLF7	nc|ENSG00000118263|O75840-3|KLF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.3102111816406	2	511.26535	1020.51615	-0.59689	-0.00030517	-3.0286	-0.0015484	-3.6255	-0.0018536	511.263726510869	77.851	0.83466	77.867	77.32	78.155	0.015907					26	19	2	0	0	0	0.024405	1	9492	9492		44.117	1.7207	1	361850			7129	3675	4548	4566	8696	8696					0.006709707517643437
DKLLTKTT	8	Unmodified	_DKLLTKTT_					0	0	0		ENSG00000168631|ENST00000462446|MUCL3;nc|ENSG00000168631|Q3MIW9|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7873229980469	2	460.276575	918.538597	-0.36233	-0.00016677	0.3307	0.00015221	-0.031626	-1.4557E-05	460.27712722183446	32.293	0.26777	32.305	32.182	32.45	0.011795					9	6	2	0	0	0	0.027866	1	2195	2195		16.473	0	1	38261			7130	7848	4549	4567	8697	8697					0.07606938211711167
DKLNSFLRGAG	11	Unmodified	_DKLNSFLRGAG_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.318359375	2	589.319837	1176.62512	-1.4708	-0.00086675	0.27499	0.00016206	-1.1958	-0.00070469	589.3198818732689	54.099	0.72577	54.099	53.799	54.524	0					58	20	4	0	0	0	0.58492	1	5890	5890		70.816	23.159	1	3235800	+		7131	22289	4550	4568	8698	8698					0.0438731776628174
DKLNSFLRGAG	11	Unmodified	_DKLNSFLRGAG_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	589.319837	1176.62512	-1.4708	-0.00086675	0.27499	0.00016206	-1.1958	-0.00070469	589.3198818732689	54.099	0.72577	54.099	53.799	54.524	0	0.01604	0.0012244	NaN	70.816	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3235800	+		7132	22289	4550	4568							0.0438731776628174
DKLNSFLRGAG	11	Unmodified	_DKLNSFLRGAG_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	589.319837	1176.62512	-0.90214	-0.00053165	-0.27654	-0.00016297	-1.1787	-0.00069462	589.3195484938886	54.186	0.6967	54.038	53.748	54.445	-0.14723	-0.044698	0.00057431	NaN	70.816	59	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3073900	+		7133	22289	4550	4568							0.0438731776628174
DKLNSFLRGAG	11	Unmodified	_DKLNSFLRGAG_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	589.319837	1176.62512	0.83332	0.00049109	-2.0393	-0.0012018	-1.206	-0.0007107	589.3185326467396	53.922	0.694	54.02	53.667	54.361	0.098015	-0.062763	-0.0015033	NaN	70.816	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3194800	+		7134	22289	4550	4568							0.0438731776628174
DKLNSFLRGAG	11	Unmodified	_DKLNSFLRGAG_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.319837	1176.62512	-1.1659	-0.0006871	-0.59888	-0.00035293	-1.7648	-0.00104	589.3194500479658	54.217	0.63765	54.081	53.867	54.505	-0.13617	-0.002161	0.00019439	NaN	70.816	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2223700	+		7135	22289	4550	4568							0.0438731776628174
DKLNSFLRGAG	11	Unmodified	_DKLNSFLRGAG_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	589.319837	1176.62512	-0.8063	-0.00047517	-0.67937	-0.00040037	-1.4857	-0.00087554	589.3193252413336	54.374	0.62424	54.129	53.891	54.515	-0.2453	0.045734	9.9523E-05	NaN	70.816	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2102800	+		7136	22289	4550	4568							0.0438731776628174
DKLNSFLRGAG	11	Unmodified	_DKLNSFLRGAG_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	589.319837	1176.62512	-0.23412	-0.00013797	-1.1595	-0.00068329	-1.3936	-0.00082126	589.3190405576171	54.328	0.841	54.131	53.889	54.73	-0.19739	0.047848	-0.00046633	NaN	70.816	51	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1646400	+		7137	22289	4550	4568							0.0438731776628174
DKLPTLFKL	9	Unmodified	_DKLPTLFKL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2442626953125	2	537.831517	1073.64848	0.23	0.0001237	2.8033	0.0015077	3.0333	0.0016314	537.8327042913121	55.552	1.0247	55.552	55.149	56.174	0					56	28	3	0	0	0	0.023478	1	6164	6164		78.264	11.302	1	861180	+		7138	25017	4551	4569	8699	8699					0.11460363550895636
DKLPVKIV	8	Unmodified	_DKLPVKIV_					0	0	0		nc|ENSG00000117713|O14497-2|ARID1A;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000117713|O14497-2|ARID1A	nc|ENSG00000117713|O14497-2|ARID1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7812805175781	2	456.299853	910.585153	-0.11602	-5.2939E-05	1.8616	0.00084943	1.7455	0.00079649	456.30067842652227	49.322	0.90815	49.221	48.841	49.75	-0.1008					32	23	2	0	0	0	0.027866	1	4927	4927		12.207	0	1	100070			7139	3657	4552	4570	8700	8700					0.12628422833643071
DKLQLLALL	9	Unmodified	_DKLQLLALL_					0	0	0			REV__ENSG00000125730|ENST00000245907|C3	REV__ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2981567382812	2	513.831517	1025.64848	0.0028223	1.4502E-06	-0.69088	-0.000355	-0.68806	-0.00035355	513.8312557458308	52.872	0.42638	52.724	52.447	52.873	-0.14723					17	10	2	0	0	0	0.024344	1	5654	5654		30.318	0	1	88638	+		7140	22835	4553	4571	8701	8701					0.13668363550891627
DKLQRYQT	8	Unmodified	_DKLQRYQT_					0	0	0		ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	ENSG00000122952|ENST00000373944|ZWINT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3055419921875	2	526.28018	1050.54581	-1.1657	-0.00061347	-2.563	-0.0013488	-3.7286	-0.0019623	526.2789246009247	65.761	0.57823	65.548	65.215	65.794	-0.21327					30	13	3	0	0	0	0.027866	1	7505	7505		19.997	6.5427	1	303770			7141	3947	4554	4572	8702	8702					0.022556708121328484
DKLRLDNTI	9	Unmodified	_DKLRLDNTI_					0	0	0			REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3003540039062	2	544.308938	1086.60332	-1.0007	-0.00054468	4.1729	0.0022713	3.1722	0.0017267	544.3109931183683	50.43	0.4325	50.43	50.242	50.675	0					20	12	3	0	0	0	0.024447	1	5259	5259		40.778	9.2484	1	188310	+		7142	20080	4555	4573	8703	8703					0.06348513017701407
DKLRMLLE	8	Unmodified	_DKLRMLLE_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27667236328125	2	509.291702	1016.56885	-0.20194	-0.00010285	-1.1733	-0.00059757	-1.3753	-0.00070042	509.29060811078136	73.156	0.5975	72.879	72.454	73.051	-0.2769					16	13	2	0	0	0	0.027866	1	8602	8602		51.335	0	1	66061	+		7143	22189	4556	4574	8704	8704					0.061229736052496264
DKLRNIAN	8	Unmodified	_DKLRNIAN_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2877502441406	2	472.269616	942.524678	0.47632	0.00022495	4.3146	0.0020377	4.791	0.0022626	472.270615299142	94.276	0.58093	94.154	93.886	94.467	-0.12215					23	13	2	0	0	0	0.027866	1	11661	11661		15.642	0	1	352200	+		7144	21768	4557	4575	8705	8705					0.05111705503259145
DKLRPLSV	8	Unmodified	_DKLRPLSV_					0	0	0			REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense	REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7701110839844	2	464.284734	926.554916	-1.0243	-0.00047555	-0.16626	-7.7192E-05	-1.1905	-0.00055274	464.28448683730176	43.939	0.75755	43.719	43.35	44.108	-0.21939					38	20	3	0	0	0	0.027866	1	4085	4085		18.324	10.093	1	1361600	+		7145	36210	4558	4576	8706	8706					0.08870064168468161
DKLRVQYIHTE	11	Unmodified	_DKLRVQYIHTE_					0	0	0			REV__ENSG00000165934|ENST00000298875|CPSF2	REV__ENSG00000165934|ENST00000298875|CPSF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.2628173828125	3	467.921014	1400.74121	0.35654	0.00016683	2.9322	0.001372	3.2887	0.0015389	468.2579914416694	50.8	0.59157	50.523	50.262	50.853	-0.27643					32	15	3	0	0	0	0.024823	1	5148	5148		21.032	0.71722	1	755240	+		7146	25946	4559	4577	8707	8707					0.05687216546334639
DKLSAVTM	8	Unmodified	_DKLSAVTM_					0	0	0			REV__nc|ENSG00000125826|Q9BYM8-3|RBCK1	REV__nc|ENSG00000125826|Q9BYM8-3|RBCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.74517822265625	2	432.728403	863.442254	0.019027	8.2334E-06	3.6524	0.0015805	3.6714	0.0015887	432.7285104316943	28.035	0.3939	27.883	27.769	28.162	-0.15195					16	9	2	0	0	0	0.027866	1	1570	1570		53.351	12.779	1	69775	+		7147	22847	4560	4578	8708	8708					0.005070473801197295
DKLSTFIFG	9	Unmodified	_DKLSTFIFG_					0	0	0		ENST00000435469.2_1_17:66099122-66110581:+|nuORF	ENST00000435469.2_1_17:66099122-66110581:+|nuORF	ENST00000435469.2_1_17:66099122-66110581:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7894287109375	2	514.276575	1026.5386	-0.59669	-0.00030686	-4.1526	-0.0021356	-4.7493	-0.0024424	514.7757984273312	61.701	0.19093	61.701	61.605	61.796	0					6	4	2	0	0	0	0.024381	1	7149	7149		29.15	4.6304	1	113530			7148	14261	4561	4579	8709	8709					0.026389382117031346
DKLTPITIF	9	Unmodified	_DKLTPITIF_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3055419921875	2	524.307875	1046.6012	-1.3714	-0.00071904	-0.30561	-0.00016024	-1.677	-0.00087928	524.3079220030174	65.354	0.57365	65.151	64.859	65.432	-0.20254					22	12	3	0	0	0	0.024374	1	7505	7505		40.778	0	1	333390			7149	5244	4562	4580	8710	8710					0.07976084279880524
DKLTPLEKV	9	Unmodified	_DKLTPLEKV_					0	0	0			REV__ENSG00000166908|ENST00000354947|PIP4K2C	REV__ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.79736328125	2	521.810782	1041.60701	-0.827	-0.00043154	0.47261	0.00024662	-0.35439	-0.00018492	521.8108837542565	56.793	0.77015	56.793	56.535	57.305	0					50	21	3	0	0	0	0.024313	1	6315	6315		42.864	0	1	4238400	+		7150	26078	4563	4581	8711	8711					0.0878718279154782
DKLTRESL	8	Unmodified	_DKLTRESL_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.2688293457031	2	481.269281	960.52401	0.04204	2.0233E-05	-0.40952	-0.00019709	-0.36748	-0.00017686	481.2690125553184	30.979	0.71528	30.826	30.553	31.269	-0.15231					52	17	5	0	0	0	0.97794	1	2015	2015		40.778	3.7497	1	4058500	+		7151	20028	4564	4582	8712	8712					0.04216866063575253
DKLVAKKAR	9	Unmodified	_DKLVAKKAR_					0	0	0			REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.30810546875	2	514.832383	1027.65021	-0.59064	-0.00030408	3.0775	0.0015844	2.4869	0.0012803	514.8336140952538	63.098	0.21042	62.859	62.695	62.905	-0.23926					5	4	2	0	0	0	0.024405	1	7319	7319		35.618	0	1	59329	+		7152	21138	4565	4583	8713	8713					0.1374941735948596
DKLVGITPQV	10	Unmodified	_DKLVGITPQV_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000495190.1_1_3:184612509-184618801:+|nuORF;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7731323242188	2	535.316232	1068.61791	-0.27251	-0.00014588	0.21617	0.00011572	-0.056334	-3.0157E-05	535.3158654492412	41.739	0.21051	41.739	41.615	41.825	0					8	5	2	0	0	0	0.03519	1	3765	3765		20.837	6.7	1	51850			7153	6560	4566	4584	8714	8714					0.08634585165827957
DKLVKFKK	8	Unmodified	_DKLVKFKK_					0	0	0			REV__ENST00000533597.1_1_11:108016907-108018114:+|nuORF	REV__ENST00000533597.1_1_11:108016907-108018114:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7870788574219	2	503.326402	1004.63825	-1.4019	-0.00070562	-4.1784	-0.0021031	-5.5803	-0.0028087	503.32546633206323	37.751	0.33678	37.533	37.344	37.681	-0.21848					12	8	2	0	0	0	0.027866	1	3015	3015		11.511	0	1	65371	+		7154	34611	4567	4585	8715	8715					0.13611800616320124
DKLVRRLI	8	Unmodified	_DKLVRRLI_					0	0	0			REV__nc|ENSG00000110619|P49589-2|CARS1	REV__nc|ENSG00000110619|P49589-2|CARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81085205078125	2	506.834926	1011.6553	-0.49297	-0.00024985	-0.68191	-0.00034562	-1.1749	-0.00059547	507.3357975123822	56.574	0.21529	56.574	56.497	56.712	0					6	5	2	0	0	0	0.027866	1	6335	6335		56.721	5.3856	1	59904	+		7155	21864	4568	4586	8716	8716					0.14993721222128897
DKLYNEAR	8	Unmodified	_DKLYNEAR_					0	0	0		EPX|p.V462Wfs*68|1|0.42|ENSG00000121053|chr17:58199639-58199639|G/-|frameshift_variant;ENSG00000121053|ENST00000225371|EPX	EPX|p.V462Wfs*68|1|0.42|ENSG00000121053|chr17:58199639-58199639|G/-|frameshift_variant	EPX|p.V462Wfs*68|1|0.42|ENSG00000121053|chr17:58199639-58199639|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7810974121094	2	504.759081	1007.50361	0.66517	0.00033575	3.0727	0.001551	3.7378	0.0018867	504.76056925453804	83.707	1.1515	83.496	82.704	83.856	-0.21159					37	26	2	0	0	0	0.027866	1	10025	10025		15.642	0	1	310080			7156	3850	4569	4587	8717	8717					0.00015695403760673798
DKMGTYSTL	9	Unmodified	_DKMGTYSTL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3030700683594	2	508.241875	1014.4692	-0.15033	-7.6405E-05	-2.0091	-0.0010211	-2.1594	-0.0010975	508.24073669936655	57.032	0.49025	56.868	56.71	57.2	-0.16431					16	13	2	0	0	0	0.024418	1	6355	6355		37.812	0	1	132170			7157	8735	4570	4588	8718	8718					-0.037458887993466305
DKMHARAR	8	Unmodified	_DKMHARAR_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3058166503906	2	492.761435	983.508317	0.67702	0.00033361	2.6069	0.0012846	3.2839	0.0016182	492.76283002105225	84.737	0.57698	84.737	84.546	85.123	0					16	13	2	0	0	0	0.027866	1	10666	10666		38.806	0	1	65510			7158	917	4571	4589	8719	8719					0.015903010655279104
DKMIRSAI	8	Unmodified	_DKMIRSAI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.738037109375	2	467.262945	932.511337	-0.7247	-0.00033863	-3.1887	-0.00149	-3.9134	-0.0018286	467.2613372888677	44.924	1.1272	44.775	44.355	45.483	-0.1488					64	32	4	0	0	0	0.027866	1	4341	4341		51.335	5.3835	1	5229100			7159	9470	4572	4590	8720	8720					0.042381313996770587
DKMLGETK	8	Unmodified	_DKMLGETK_					0	0	0			REV__nc|ENSG00000148516|P37275-4|ZEB1	REV__nc|ENSG00000148516|P37275-4|ZEB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.7510986328125	2	461.239135	920.463718	-0.22496	-0.00010376	3.5106	0.0016192	3.2856	0.0015155	461.2409511609513	34.351	0.16211	34.351	34.209	34.371	0					5	3	2	0	0	0	0.027866	1	2549	2549		10.265	0	1	56104	+		7160	36771	4573	4591	8721	8721					0.00030432408823344304
DKMMRKVIII	10	Unmodified	_DKMMRKVIII_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.90338134765625	3	416.25065	1245.73012	-0.10965	-4.5642E-05	-2.8491	-0.0011859	-2.9587	-0.0012316	416.2488923195835	32.127	0.42677	31.969	31.737	32.163	-0.15772					13	9	2	0	0	0	0.03519	1	2146	2146		20.837	3.004	1	135860	+		7161	24140	4574	4592	8722	8722					0.11708399646840917
DKNAYYLPGGF	11	Unmodified	_DKNAYYLPGGF_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.7715148925781	3	415.536389	1243.58734	-0.27796	-0.0001155	-3.7539	-0.0015599	-4.0319	-0.0016754	415.5347082793834	45.072	0.39227	44.861	44.595	44.988	-0.21109					16	9	2	0	0	0	0.024727	1	4230	4230		23.378	2.3457	1	124970	+		7162	24388	4575	4593	8723	8723					-0.02471193219230372
DKNAYYLPGGF	11	Unmodified	_DKNAYYLPGGF_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	415.536389	1243.58734	-1.0218	-0.00042461	-1.2705	-0.00052794	-2.2924	-0.00095256	415.5352107096795	44.895	0.38776	44.796	44.554	44.942	-0.099449	-0.032322	0.0019584	NaN	17.833	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66699	+		7163	24388	4575	4593							-0.02471193219230372
DKNCWIFE	8	Unmodified	_DKNCWIFE_					0	0	0			REV__nc|nan|Q6P387-2|C16orf46	REV__nc|nan|Q6P387-2|C16orf46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2950439453125	2	527.73676	1053.45897	-0.32393	-0.00017095	3.7345	0.0019708	3.4106	0.0017999	527.7388585416726	54.017	0.48299	53.87	53.711	54.194	-0.14723					17	13	2	0	0	0	0.027866	1	5866	5866		30.504	11.4	1	103980	+		7164	26020	4576	4594	8724	8724					-0.06562451733930175
DKNEKGRQN	9	Unmodified	_DKNEKGRQN_					0	0	0		nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL	nc|ENSG00000136155|O95171-3|SCEL	nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.31689453125	2	544.775793	1087.53703	-0.45305	-0.00024681	1.9417	0.0010578	1.4886	0.00081098	544.776954278758	90.873	0.49905	90.884	90.492	90.991	0.011276					16	11	2	0	0	0	0.024344	1	11412	11412		37.812	0	1	112940			7165	4989	4577	4595	8725	8725					-0.003233028243357694
DKNFPFWLWIE	11	Unmodified	_DKNFPFWLWIE_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7352294921875	3	498.918722	1493.73434	-0.56695	-0.00028286	2.988	0.0014908	2.4211	0.0012079	499.2550155465514	31.28	0.6237	31.128	30.681	31.305	-0.15231					20	15	2	0	0	0	0.024735	1	2021	2021		16.53	3.5724	1	212310			7166	3443	4578	4596	8726	8726					0.007219036657488687
DKNGRITP	8	Unmodified	_DKNGRITP_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26324462890625	2	450.748516	899.482479	-0.169	-7.6177E-05	4.3307	0.0019521	4.1617	0.0018759	450.74995536807455	61.141	0.34074	60.928	60.719	61.06	-0.21339					12	8	2	0	0	0	0.027866	1	7050	7050		19.104	4.2386	1	102190	+		7167	24228	4579	4597	8727	8727					0.028717300948869706
DKNIALLD	8	Unmodified	_DKNIALLD_					0	0	0		ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	ENSG00000180263|ENST00000343958|FGD6	ENSG00000180263|ENST00000343958|FGD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2638244628906	2	451.2531	900.491647	0.34594	0.00015611	-0.40486	-0.00018269	-0.058919	-2.6587E-05	451.25285146179385	61.538	0.68862	61.538	61.18	61.868	0					24	17	2	0	0	0	0.027866	1	7083	7083		53.351	3.9099	1	289160			7168	8969	4580	4598	8728	8728					0.03742078660570769
DKNIALLD	8	Unmodified	_DKNIALLD_					0	0	0		ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	ENSG00000180263|ENST00000343958|FGD6	ENSG00000180263|ENST00000343958|FGD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2640686035156	2	451.2531	900.491647	0.51898	0.00023419	-0.46373	-0.00020926	0.055251	2.4932E-05	451.25281976065287	61.74	0.71986	61.513	61.225	61.945	-0.22663					26	18	2	0	0	0	0.027866	1	7093	7093		44.117	3.3386	1	213410			7169	8969	4580	4598	8729	8729					0.03742078660570769
DKNIALLD	8	Unmodified	_DKNIALLD_					0	0	0		ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	ENSG00000180263|ENST00000343958|FGD6	ENSG00000180263|ENST00000343958|FGD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26409912109375	2	451.2531	900.491647	0.23722	0.00010704	0.014749	6.6556E-06	0.25196	0.0001137	451.2529354543999	61.366	0.64728	61.437	61.203	61.85	0.071125					28	16	2	0	0	0	0.027866	1	6996	6996		53.351	3.9099	1	150050			7170	8969	4580	4598	8730	8730					0.03742078660570769
DKNIAMTGQI	10	Unmodified	_DKNIAMTGQI_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.318359375	2	545.781699	1089.54884	-1.4732	-0.00080405	-1.0206	-0.000557	-2.4938	-0.0013611	545.7804843515455	81.254	0.52718	81.278	81.007	81.534	0.023911					16	12	2	0	0	0	0.03519	1	10079	10079		56.434	27.264	1	251720			7171	6502	4581	4599	8731	8731					0.007651778746321725
DKNIGPLVK	9	Unmodified	_DKNIGPLVK_					0	0	0		nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1;nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.8135986328125	2	492.297842	982.581131	-0.10769	-5.3018E-05	-1.4832	-0.00073019	-1.5909	-0.00078321	492.2970388722825	54.028	0.46634	53.831	53.456	53.922	-0.19739					20	14	2	0	0	0	0.023842	1	5634	5634		41.427	0	1	408540			7172	969	4582	4600	8732	8732					0.08914333339930636
DKNIQDMGE	9	Unmodified	_DKNIQDMGE_					0	0	0			REV__ENSG00000132639|ENST00000254976|SNAP25	REV__ENSG00000132639|ENST00000254976|SNAP25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2846069335938	2	525.232039	1048.44952	-0.44302	-0.00023269	-2.1468	-0.0011276	-2.5898	-0.0013602	525.2309526935502	66.536	0.38251	66.287	66.021	66.404	-0.24839					13	9	2	0	0	0	0.024457	1	7600	7600		10.265	0.5596	1	87183	+		7173	23301	4583	4601	8733	8733					-0.07276264810116118
DKNKLCYI	8	Unmodified	_DKNKLCYI_					0	0	0			REV__ENSG00000153230|ENST00000283225|OR14K1	REV__ENSG00000153230|ENST00000283225|OR14K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.8038024902344	2	498.762778	995.511002	-0.42454	-0.00021175	-3.1066	-0.0015495	-3.5312	-0.0017612	498.7610454789579	52.405	0.5981	52.22	51.997	52.595	-0.18521					33	14	3	0	0	0	0.027866	1	5488	5488		30.504	1.3541	1	977850	+		7174	24892	4584	4602	8734	8734					0.013067116798310963
DKNKSIHQL	9	Unmodified	_DKNKSIHQL_					0	0	0			REV__ENSG00000160808|ENST00000292327|MYL3	REV__ENSG00000160808|ENST00000292327|MYL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.80126953125	2	541.80128	1081.58801	-0.90128	-0.00048831	0.5017	0.00027182	-0.39958	-0.00021649	541.8014362020937	45.139	0.89071	45.183	44.756	45.647	0.043877					45	25	2	0	0	0	0.42604	1	4322	4322		64.207	0	1	3717700	+		7175	25349	4585	4603	8735	8735					0.050476462205324424
DKNKVTIW	8	Unmodified	_DKNKVTIW_					0	0	0		ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	ENSG00000188039|ENST00000524140|NWD1	ENSG00000188039|ENST00000524140|NWD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2825012207031	2	502.282192	1002.54983	-1.3762	-0.00069122	1.0602	0.00053252	-0.31596	-0.0001587	502.282597619088	51.722	1.1507	51.453	51.049	52.2	-0.26903					73	30	4	0	0	0	0.56067	1	5341	5341		79.939	4.8959	1	6042500			7176	9687	4586	4604	8736	8736					0.048657603058586574
DKNLSMKSL	9	Unmodified	_DKNLSMKSL_					0	0	0			REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	REV__nc|ENSG00000108423|Q9UJT1-3|TUBD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.79296875	2	518.278792	1034.54303	-0.40299	-0.00020886	-3.1987	-0.0016578	-3.6017	-0.0018667	518.7794604853834	64.181	0.16087	63.954	63.866	64.027	-0.22773					5	3	2	0	0	0	0.024261	1	7285	7285		54.776	19.158	1	43653	+		7177	21733	4587	4605	8737	8737					0.027140793629769178
DKNQERLEM	9	Unmodified	_DKNQERLEM_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.336181640625	2	581.779687	1161.54482	-0.38043	-0.00022133	4.1537	0.0024166	3.7733	0.0021952	581.7822482895698	53.355	0.88099	53.45	53.23	54.111	0.095669					32	24	2	0	0	0	0.024397	1	5761	5761		47.657	19.775	1	256300	+		7178	23525	4588	4606	8738	8738					-0.02948911619091632
DKNQERLEM	9	Unmodified	_DKNQERLEM_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	581.779687	1161.54482	-1.1065	-0.00064375	5.7365	0.0033374	4.63	0.0026936	581.7829689458301	53.549	0.50224	53.549	53.404	53.907	0	0.045484	0.0011016	NaN	56.721	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305460	+		7179	23525	4588	4606							-0.02948911619091632
DKNQRKKQIDD	11	Unmodified	_DKNQRKKQIDD_					0	0	0			REV__nc|ENSG00000130595|P45378-5|TNNT3	REV__nc|ENSG00000130595|P45378-5|TNNT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.2745361328125	3	463.24779	1386.72154	-1.2939	-0.00059942	0.073909	3.4238E-05	-1.22	-0.00056518	463.2474512577977	21.535	0.68115	21.323	21.02	21.701	-0.2128					29	13	4	0	0	0	0.024779	1	670	670		8.0344	0	1	91851	+		7180	23129	4589	4607	8739	8739					0.04364840535572512
DKNRCLDL	8	Unmodified	_DKNRCLDL_					0	0	0		CON__REFSEQ:XP_932229	CON__REFSEQ:XP_932229	CON__REFSEQ:XP_932229	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.23040771484375	2	488.747659	975.480765	-0.83276	-0.00040701	-2.8622	-0.0013989	-3.695	-0.0018059	488.7461076752831	31.173	1.0836	31.173	30.426	31.509	0					45	25	3	0	0	0	0.027866	1	2083	2083		44.117	0	1	131530		+	7181	578	4590	4608	8740	8740					-0.007956469853752424
DKNRIKPPF	9	Unmodified	_DKNRIKPPF_					0	0	0			REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|7|2|sense	REV__L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|7|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.738525390625	2	557.822015	1113.62948	-0.86411	-0.00048202	1.0534	0.00058761	0.18929	0.00010559	557.8228114475489	60.6	0.36955	60.6	60.437	60.807	0					17	9	3	0	0	0	0.024436	1	7010	7010		30.504	0	1	318280	+		7182	36211	4591	4609	8741	8741					0.0772082697985752
DKNSFPFF	8	Unmodified	_DKNSFPFF_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR;ENSG00000164327|ENST00000357387|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7509765625	2	501.239993	1000.46543	-0.55652	-0.00027895	1.0044	0.00050346	0.44791	0.00022451	501.24047626596564	35.671	0.22096	35.48	35.295	35.516	-0.19153					9	5	2	0	0	0	0.027866	1	2712	2712		35.201	4.6971	1	137340			7183	18456	4592	4610	8742	8742					-0.034781905109070976
DKNSFPFF	8	Unmodified	_DKNSFPFF_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR;ENSG00000164327|ENST00000357387|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.239993	1000.46543	-0.5735	-0.00028746	-0.83063	-0.00041635	-1.4041	-0.00070381	501.2395727153514	35.832	0.2233	35.627	35.428	35.651	-0.20518	0.054922	-0.00077505	NaN	76.847	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236540			7184	18456	4592	4610							-0.034781905109070976
DKNSRHLAE	9	Unmodified	_DKNSRHLAE_					0	0	0			REV__ENSG00000095585|ENST00000224337|BLNK	REV__ENSG00000095585|ENST00000224337|BLNK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.258544921875	2	535.272887	1068.53122	-0.71023	-0.00038017	-2.6355	-0.0014107	-3.3457	-0.0017909	535.2712596532209	53.702	1.2333	53.798	53.092	54.325	0.095669					72	34	3	0	0	0	0.024288	1	5687	5687		36.447	0	1	1634100	+		7185	20969	4593	4611	8743	8743					-0.0003040133599370165
DKNTKRNF	8	Unmodified	_DKNTKRNF_					0	0	0			REV__ENST00000330825.3_1_13:45963855-45964907:+|nuORF	REV__ENST00000330825.3_1_13:45963855-45964907:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8442687988281	2	511.772522	1021.53049	-0.00065801	-3.3675E-07	2.8404	0.0014537	2.8398	0.0014533	511.7734661410025	76.383	0.76699	76.395	76.09	76.857	0.011635					40	18	4	0	0	0	0.027866	1	9335	9335		55.504	5.4797	1	930090	+		7186	30466	4594	4612	8744	8744					0.020588040149391418
DKNTMTDSTI	10	Unmodified	_DKNTMTDSTI_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.2801513671875	2	563.258253	1124.50195	-0.94752	-0.0005337	-0.70676	-0.00039809	-1.6543	-0.00093179	563.2571120219974	37.764	0.34035	37.544	37.311	37.651	-0.2195					14	8	2	0	0	0	0.03519	1	3060	3060		23.523	3.5259	1	107280			7187	10013	4595	4613	8745	8745					-0.055317264671884914
DKNVIPDEV	9	Unmodified	_DKNVIPDEV_					0	0	0		ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2919311523438	2	514.766571	1027.51859	0.0083174	4.2815E-06	-0.27817	-0.00014319	-0.26986	-0.00013891	514.7662089515572	39.871	0.58141	39.871	39.594	40.176	0					20	12	2	0	0	0	0.024397	1	3495	3495		39.253	15.05	1	342000			7188	7158	4596	4614	8746	8746					0.005931424811024044
DKNVLCAVLS	10	Unmodified	_DKNVLCAVLS_					0	0	0			REV__ENST00000469912.1_1_3:46592844-46593081:-|nuORF	REV__ENST00000469912.1_1_3:46592844-46593081:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3067626953125	2	531.286617	1060.55868	0.92095	0.00048929	-0.62367	-0.00033135	0.29728	0.00015794	531.2859811294736	59.034	0.328	58.847	58.538	58.866	-0.18705					12	8	2	0	0	0	0.03519	1	6665	6665		56.434	29.741	1	249880	+		7189	33141	4597	4615	8747	8747					0.03082365880004545
DKNVPAPPVK	10	Unmodified	_DKNVPAPPVK_					0	0	0			REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.8084106445312	2	532.808574	1063.60259	-0.14498	-7.7247E-05	-2.2931	-0.0012218	-2.4381	-0.001299	532.8072054890515	45.784	2.6809	45.687	45.359	48.04	-0.096653					185	73	5	0	0	0	0.34101	1	4402	4402		104.75	8.5561	1	72845000	+		7190	23253	4598	4616	8748	8748					0.07333718368636255
DKPADETK	8	Unmodified	_DKPADETK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2598571777344	2	452.224539	902.434526	0.54085	0.00024459	-0.48168	-0.00021783	0.059175	2.6761E-05	452.2241955931763	40.197	0.81498	40.197	39.808	40.623	0					45	22	4	0	0	0	0.027866	1	3496	3496		17.468	0	1	2289700	+		7191	22447	4599	4617	8749	8749					-0.02059388615816715
DKPAVAASM	9	Unmodified	_DKPAVAASM_					0	0	0			REV__ENST00000591841.1_1_19:16034883-16038300:-|nuORF	REV__ENST00000591841.1_1_19:16034883-16038300:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.28741455078125	2	445.226028	888.437503	0.85535	0.00038082	-0.42044	-0.00018719	0.43491	0.00019363	445.22579812818765	18.161	0.93754	18.005	17.854	18.792	-0.15637					21	18	2	0	0	0	0.02435	1	268	268		34.173	8.7224	1	39283	+		7192	35731	4600	4618	8750	8750					-0.011178367626484942
DKPDVLHSL	9	Unmodified	_DKPDVLHSL_					0	0	0			REV__nc|ENSG00000149541|O94766-2|B3GAT3	REV__nc|ENSG00000149541|O94766-2|B3GAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.810791015625	2	512.277106	1022.53966	-0.90168	-0.00046191	2.6664	0.0013659	1.7647	0.00090402	512.7805002980326	58.298	0.31837	58.123	58.042	58.36	-0.1749					12	8	2	0	0	0	0.024397	1	6578	6578		31.53	3.6476	1	134570	+		7193	24686	4601	4619	8751	8751					0.029291525806115715
DKPDVVNVY	9	Unmodified	_DKPDVVNVY_					0	0	0			REV__nc|ENSG00000100150|O75140-5|DEPDC5;REV__nc|ENSG00000100150|O75140-6|DEPDC5	REV__nc|ENSG00000100150|O75140-6|DEPDC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.7843017578125	2	524.769114	1047.52368	-0.42843	-0.00022483	0.09287	4.8736E-05	-0.33556	-0.00017609	524.769365455385	65.361	0.36555	65.11	64.823	65.189	-0.25112					12	8	2	0	0	0	0.024484	1	7455	7455		30.318	0	1	130050	+		7194	21055;36515	4602	4620	8752	8752					0.001814463437312952
DKPFHLVE	8	Unmodified	_DKPFHLVE_					0	0	0			REV__ENST00000524323.1_1_8:23708937-23709015:-|nuORF	REV__ENST00000524323.1_1_8:23708937-23709015:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.30584716796875	2	492.761092	983.507631	-0.4744	-0.00023377	3.9793	0.0019608	3.5049	0.0017271	492.76320672753275	84.622	0.78827	84.647	84.248	85.036	0.025528					23	18	2	0	0	0	0.027866	1	10572	10572		35.618	2.1027	1	59741	+		7195	34381	4603	4621	8753	8753					0.0152178489746575
DKPFLGINL	9	Unmodified	_DKPFLGINL_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3138732910156	2	508.792392	1015.57023	-0.074574	-3.7943E-05	2.3416	0.0011914	2.2671	0.0011535	508.793464175402	104.71	0.32672	104.71	104.4	104.72	0.00096893					15	9	2	0	0	0	0.024405	1	13392	13392		20.947	0	1	63777	+		7196	19995	4604	4622	8754	8754					0.06306930965638458
DKPGKECAD	9	Unmodified	_DKPGKECAD_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.73260498046875	2	481.716024	961.417496	0.069138	3.3305E-05	-3.8293	-0.0018447	-3.7602	-0.0018114	481.71456199717306	57.263	0.4215	57.263	57.038	57.459	0					13	10	2	0	0	0	0.02435	1	6457	6457		26.693	4.733	1	215210			7197	8148	4605	4623	8755	8755					-0.06475632493277317
DKPILRID	8	Unmodified	_DKPILRID_					0	0	0			REV__ENSG00000070501|ENST00000265421|POLB	REV__ENSG00000070501|ENST00000265421|POLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.24871826171875	2	485.290017	968.565481	-0.26439	-0.00012831	-0.63014	-0.0003058	-0.89453	-0.00043411	485.2894343691644	26.41	0.40092	26.242	26.019	26.42	-0.16816					18	10	2	0	0	0	0.027866	1	1333	1333		38.806	0	1	94695	+		7198	20428	4606	4624	8756	8756					0.07994046822898326
DKPKLKNI	8	Unmodified	_DKPKLKNI_					0	0	0		nc|ENSG00000131781|P49326-3|FMO5	nc|ENSG00000131781|P49326-3|FMO5	nc|ENSG00000131781|P49326-3|FMO5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.301025390625	2	478.300384	954.586216	0.04144	1.9821E-05	-0.5208	-0.0002491	-0.47936	-0.00022928	478.29998573202954	31.446	1.1082	31.446	30.961	32.07	0					49	26	4	0	0	0	0.87148	1	2108	2108		53.351	7.3792	1	1988900			7199	18272	4607	4625	8757	8757					0.10710637202555517
DKPKSTKLI	9	Unmodified	_DKPKSTKLI_					0	0	0			REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2879028320312	2	515.318774	1028.623	-0.88515	-0.00045613	0.011472	5.9119E-06	-0.87367	-0.00045022	515.3186847017752	34.249	0.47284	34.074	33.82	34.293	-0.17557					24	11	3	0	0	0	0.024457	1	2517	2517		29.15	0	1	318600	+		7200	22187	4608	4626	8758	8758					0.1098288902846889
DKPLINHLL	9	Unmodified	_DKPLINHLL_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5;REV__ENST00000552099.5_1_12:49165333-49167571:-|nuORF	REV__nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.816650390625	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.72875	1	10935	10935		44.117	3.3386	1	3781500	+		7201	26749;26846	4609	4627	8759	8759					0.09498308748334239
DKPLLSALD	9	Unmodified	_DKPLLSALD_					0	0	0		ENSG00000163516|ENST00000323348|ANKZF1;ENST00000474225.5_1_2:220094544-220097914:+|nuORF;ENST00000486203.5_1_2:220094592-220097474:+|nuORF;ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF	ENSG00000163516|ENST00000323348|ANKZF1	ENSG00000163516|ENST00000323348|ANKZF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.289794921875	2	486.274032	970.533512	-0.073467	-3.5725E-05	1.5699	0.00076339	1.4964	0.00072766	486.27468186952507	34.767	0.52634	34.551	34.267	34.793	-0.21555					21	12	2	0	0	0	0.023239	1	2574	2574		64.207	2.0999	1	227760			7202	7093	4610	4628	8760	8760					0.0470663434908829
DKPPQRAPGLF	11	Unmodified	_DKPPQRAPGLF_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2;REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1829833984375	3	409.227779	1224.66151	1.3794	0.00056447	-0.35679	-0.00014601	1.0226	0.00041846	409.5616956002686	24.992	0.22166	24.821	24.643	24.865	-0.17151					6	4	2	0	0	0	0.024747	1	1101	1101		21.78	0	1	10526	+		7203	29163;37197	4611	4629	8761	8761					0.05816194662975249
DKPQKAVLL	9	Unmodified	_DKPQKAVLL_					0	0	0		nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;ENSG00000164398|ENST00000651883|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.3135070800781	2	506.313492	1010.61243	1.0345	0.00052378	-3.2625	-0.0016518	-2.228	-0.0011281	506.31263149461626	64.121	1.1814	64.167	63.794	64.975	0.045502					77	31	4	0	0	0	0.4752	1	7484	7484		60.972	7.6205	1	3405900			7204	7272	4612	4630	8762	8762					0.1075490637402936
DKPQLVAR	8	Unmodified	_DKPQLVAR_					0	0	0			REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.787353515625	2	463.774534	925.534515	0.58958	0.00027343	-2.0886	-0.00096864	-1.499	-0.00069521	463.7733926691444	70.822	0.12781	70.833	70.769	70.896	0.010735					4	2	2	0	0	0	0.027866	1	8493	8493		82.241	21.269	1	59611	+		7205	23047	4613	4631	8763	8763					0.06876893508660942
DKPSLVVPD	9	Unmodified	_DKPSLVVPD_					0	0	0			REV__ENSG00000178035|ENST00000326739|IMPDH2	REV__ENSG00000178035|ENST00000326739|IMPDH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.9281921386719	2	485.266207	968.517862	-0.064277	-3.1191E-05	2.3324	0.0011318	2.2681	0.0011007	485.26713429572476	45.441	0.36944	45.189	45.055	45.425	-0.25252					15	10	2	0	0	0	0.024397	1	4288	4288		24.519	0	1	135790	+		7206	27160	4614	4632	8764	8764					0.032343478320512986
DKPSSILVQ	9	Unmodified	_DKPSSILVQ_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.30584716796875	2	493.779482	985.544411	-0.45811	-0.00022621	-0.45491	-0.00022463	-0.91303	-0.00045083	493.77950755637806	84.426	1.1774	84.452	83.901	85.079	0.02655					61	27	3	0	0	0	0.0242	1	10572	10572		51.193	0	1	365950	+		7207	36427	4615	4633	8765	8765					0.05106036723395846
DKPTDHELD	9	Unmodified	_DKPTDHELD_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2466430664062	2	535.24346	1068.47237	-1.3819	-0.00073968	-0.48326	-0.00025866	-1.8652	-0.00099834	535.2425479704875	34.405	0.46814	34.455	34.213	34.682	0.050255					18	11	2	0	0	0	0.024288	1	2519	2519		62.107	6.6032	1	226870			7208	1189	4616	4634	8766	8766					-0.05912922420998257
DKPVWPPI	8	Unmodified	_DKPVWPPI_					0	0	0			REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7878112792969	2	476.268553	950.522553	0.38139	0.00018164	0.73003	0.00034769	1.1114	0.00052933	476.2684089675007	59.465	0.19137	59.551	59.426	59.617	0.085682					7	4	2	0	0	0	0.027866	1	6714	6714		45.952	12.436	1	51996	+		7209	26091	4617	4635	8767	8767					0.0453127676545364
DKPWVFAQL	9	Unmodified	_DKPWVFAQL_					0	0	0		nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.3020629882812	2	552.297842	1102.58113	-0.29602	-0.00016349	1.8537	0.0010238	1.5577	0.00086031	552.2975513545102	54.106	1.1799	54.106	53.799	54.979	0					102	33	6	0	0	0	0.16638	1	5902	5902		95.815	2.6719	1	4942300			7210	6579	4618	4636	8768	8768					0.033943333399292897
DKPYVRTIGG	10	Unmodified	_DKPYVRTIGG_					0	0	0			REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7830810546875	2	553.303655	1104.59276	-0.27342	-0.00015129	-0.71726	-0.00039686	-0.99069	-0.00054815	553.3031850433	41.223	0.50812	40.995	40.767	41.275	-0.2278					28	12	3	0	0	0	0.03519	1	3659	3659		31.53	14.062	1	350270	+		7211	33596	4619	4637	8769	8769					0.04464530363270569
DKPYVRTIGG	10	Unmodified	_DKPYVRTIGG_					0	0	0			REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.303655	1104.59276	0.090835	5.0259E-05	0.28457	0.00015745	0.3754	0.00020771	553.3042591281976	40.572	0.49332	40.572	40.414	40.908	0	-0.25631	0.00063239	NaN	24.519	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410550	+		7212	33596	4619	4637							0.04464530363270569
DKPYVRTIGG	10	Unmodified	_DKPYVRTIGG_					0	0	0			REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.303655	1104.59276	0.45344	0.00025089	0.10041	5.5555E-05	0.55384	0.00030644	553.3040899544511	40.746	0.71391	40.623	40.441	41.155	-0.12317	-0.20509	0.00042859	NaN	24.519	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364900	+		7213	33596	4619	4637							0.04464530363270569
DKPYVRTIGG	10	Unmodified	_DKPYVRTIGG_					0	0	0			REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.303655	1104.59276	-0.46416	-0.00025682	1.6864	0.00093308	1.2222	0.00067626	553.3049214671638	40.801	0.41296	40.824	40.663	41.076	0.023006	-0.0033599	0.0021836	NaN	24.519	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427490	+		7214	33596	4619	4637							0.04464530363270569
DKPYVRTIGG	10	Unmodified	_DKPYVRTIGG_					0	0	0			REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.303655	1104.59276	-0.4535	-0.00025093	-0.69325	-0.00038358	-1.1467	-0.0006345	553.3032264631044	41.031	0.50133	40.896	40.597	41.099	-0.13554	0.067925	-0.00044967	NaN	24.519	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383780	+		7215	33596	4619	4637							0.04464530363270569
DKPYVRTIGG	10	Unmodified	_DKPYVRTIGG_					0	0	0			REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	REV__ENST00000486539.1_1_7:81596969-81600094:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.303655	1104.59276	-0.86189	-0.00047689	0.29462	0.00016301	-0.56727	-0.00031387	553.3037885490592	41.287	0.58031	41.057	40.733	41.313	-0.23029	0.2293	0.00064351	NaN	24.519	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307360	+		7216	33596	4619	4637							0.04464530363270569
DKQASLFLLL	10	Unmodified	_DKQASLFLLL_					0	0	0		ENST00000307116.6_1_10:74767915-74768032:-|nuORF	ENST00000307116.6_1_10:74767915-74768032:-|nuORF	ENST00000307116.6_1_10:74767915-74768032:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7745361328125	2	574.339707	1146.66486	-0.38852	-0.00022314	-3.4638	-0.0019894	-3.8523	-0.0022126	574.3381071258182	34.602	0.40266	34.395	34.043	34.446	-0.20695					11	9	2	0	0	0	0.03519	1	2538	2538		19.104	0	1	44519			7217	12006	4620	4638	8770	8770					0.09739444716979051
DKQDIKDL	8	Unmodified	_DKQDIKDL_					0	0	0			REV__ENST00000503240.5_1_5:148743537-148748214:+|nuORF	REV__ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2301940917969	2	487.761289	973.508025	-0.66786	-0.00032576	2.4641	0.0012019	1.7962	0.00087611	487.76210470114097	31.322	0.60235	31.391	31.124	31.726	0.068962					31	14	3	0	0	0	0.027866	1	1997	1997		27.882	0	1	276470	+		7218	24442	4621	4639	8771	8771					0.02021159826665553
DKQELEKLL	9	Unmodified	_DKQELEKLL_					0	0	0			REV__ENSG00000053328|ENST00000338882|METTL24	REV__ENSG00000053328|ENST00000338882|METTL24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2928466796875	2	558.318971	1114.62339	-0.078697	-4.3938E-05	1.4527	0.00081109	1.374	0.00076715	558.3195972898329	76.513	0.63521	76.245	76.088	76.723	-0.26807					22	14	2	0	0	0	0.024017	1	9069	9069		56.434	5.2411	1	211650	+		7219	20179	4622	4640	8772	8772					0.0706626395767671
DKQELEKLL	9	Unmodified	_DKQELEKLL_					0	0	0			REV__ENSG00000053328|ENST00000338882|METTL24	REV__ENSG00000053328|ENST00000338882|METTL24	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.318971	1114.62339	-0.20769	-0.00011596	0.44989	0.00025118	0.2422	0.00013523	558.3191667871374	76.275	0.52606	76.275	76.071	76.597	0	0.027237	-0.00040993	NaN	56.434	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706550	+		7220	20179	4622	4640							0.0706626395767671
DKQELEKLL	9	Unmodified	_DKQELEKLL_					0	0	0			REV__ENSG00000053328|ENST00000338882|METTL24	REV__ENSG00000053328|ENST00000338882|METTL24	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.318971	1114.62339	-0.6781	-0.00037859	0.99233	0.00055404	0.31423	0.00017544	558.3195941190289	76.478	0.60962	76.25	76.081	76.691	-0.22843	0.001927	0.00019578	NaN	56.434	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717120	+		7221	20179	4622	4640							0.0706626395767671
DKQFRSVIDSA	11	Unmodified	_DKQFRSVIDSA_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5180969238281	3	422.554331	1264.64116	-0.56137	-0.00023721	0.22165	9.3659E-05	-0.33972	-0.00014355	422.5540966775034	30.331	1.5097	30.153	29.442	30.952	-0.17818					46	23	3	0	0	0	0.02475	1	1998	1998		37.6	13.368	1	447140	+		7222	22285	4623	4641	8773	8773					0.01942979212526552
DKQFRSVIDSA	11	Unmodified	_DKQFRSVIDSA_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	422.554331	1264.64116	0.18269	7.7195E-05	-0.97678	-0.00041274	-0.7941	-0.00033555	422.55369659423076	30.356	1.0956	30.206	29.418	30.513	-0.14952	0.018265	-0.00064645	NaN	37.6	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386600	+		7223	22285	4623	4641							0.01942979212526552
DKQGRPLL	8	Unmodified	_DKQGRPLL_					0	0	0		ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.77581787109375	2	463.774534	925.534515	0.08753	4.0594E-05	4.4505	0.002064	4.538	0.0021046	463.7763512355861	73.483	2.1596	73.483	73.034	75.194	0					92	53	3	0	0	0	0.87148	1	8978	8978		53.351	0.41475	1	3968600			7224	11782	4624	4642	8774	8774					0.06876893508649573
DKQIEPHF	8	Unmodified	_DKQIEPHF_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.30340576171875	2	507.256174	1012.49779	-0.51189	-0.00025966	-1.2595	-0.0006389	-1.7714	-0.00089856	507.2538155476616	56.972	0.22847	56.972	56.809	57.038	0					9	6	2	0	0	0	0.027866	1	6361	6361		26.693	0	1	92488	+		7225	23702	4625	4643	8775	8775					-0.007954031079179913
DKQKEEVK	8	Unmodified	_DKQKEEVK_					0	0	0		ENSG00000084453|ENST00000683939|SLCO1A2;nc|ENSG00000084453|P46721-2|SLCO1A2;ENST00000463718.5_1_12:21428225-21457481:-|nuORF	ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.2668151855469	2	502.274564	1002.53457	-1.0743	-0.00053958	-0.83878	-0.0004213	-1.913	-0.00096087	502.27319013664936	82.317	0.73532	82.176	81.743	82.478	-0.14014					22	16	2	0	0	0	0.027866	1	9849	9849		32.812	7.2384	1	268660			7226	1769	4626	4644	8776	8776					0.03340848718005418
DKQKEEVK	8	Unmodified	_DKQKEEVK_					0	0	0		ENSG00000084453|ENST00000683939|SLCO1A2;nc|ENSG00000084453|P46721-2|SLCO1A2;ENST00000463718.5_1_12:21428225-21457481:-|nuORF	ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.274564	1002.53457	-0.23319	-0.00011713	2.0759	0.0010427	1.8427	0.00092554	502.27448243335516	82.1	0.66845	82.126	81.819	82.487	0.025711	-0.0029734	0.00071985	NaN	13.454	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435470			7227	1769	4626	4644							0.03340848718005418
DKQLHQII	8	Unmodified	_DKQLHQII_					0	0	0			REV__ENSG00000152254|ENST00000375363|G6PC2	REV__ENSG00000152254|ENST00000375363|G6PC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.78753662109375	2	497.787641	993.56073	-0.54031	-0.00026896	0.3114	0.00015501	-0.22891	-0.00011395	497.7876822515526	60.7	0.88899	60.7	60.366	61.255	0					55	23	4	0	0	0	0.74904	1	6993	6993		63.306	0	1	3625800	+		7228	24829	4627	4645	8777	8777					0.0636916268015284
DKQPCLDLIE	10	Unmodified	_DKQPCLDLIE_					0	0	0		MYO19|p.N469K|1|0.55|ENSG00000278259|chr17:36507459-36507459|G/C|missense_variant	MYO19|p.N469K|1|0.55|ENSG00000278259|chr17:36507459-36507459|G/C|missense_variant	MYO19|p.N469K|1|0.55|ENSG00000278259|chr17:36507459-36507459|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	587.2957153320312	2	587.294639	1172.57472	-0.82882	-0.00048676	1.7662	0.0010373	0.9374	0.00055053	587.2956514141753	74.266	2.0461	74.007	73.701	75.747	-0.25887					171	51	5	0	0	0	1.0002	1	9106	9106		45.972	3.5761	1	53559000			7229	18012	4628	4646	8778	8778					-0.004659726737600067
DKQQITSH	8	Unmodified	_DKQQITSH_					0	0	0			REV__ACAP2|p.Y259Vfs*5|1|0.08|ENSG00000114331|chr3:195320783-195320784|-/GTTCTTTAAC|frameshift_variant	REV__ACAP2|p.Y259Vfs*5|1|0.08|ENSG00000114331|chr3:195320783-195320784|-/GTTCTTTAAC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.290283203125	2	478.743431	955.472308	-0.070974	-3.3978E-05	1.2567	0.00060165	1.1858	0.00056768	478.74371357060147	31.097	0.32155	30.945	30.724	31.045	-0.15231					10	7	2	0	0	0	0.027866	1	2020	2020		63.306	2.3343	1	77014	+		7230	19052	4629	4647	8779	8779					-0.007208776303286868
DKQQKKKPL	9	Unmodified	_DKQQKKKPL_					0	0	0			REV__ENSG00000145354|ENST00000273986|CISD2	REV__ENSG00000145354|ENST00000273986|CISD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3237915039062	2	556.842948	1111.67134	-0.54307	-0.00030241	4.2011	0.0023394	3.6581	0.002037	556.8453078302134	75.875	0.41031	75.875	75.622	76.032	0					15	10	2	0	0	0	0.024344	1	9356	9356		54.776	24.935	1	102800	+		7231	24402	4630	4648	8780	8780					0.11997382668369028
DKQQQQLLNL	10	Unmodified	_DKQQQQLLNL_					0	0	0		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8861999511719	3	409.894577	1226.6619	0.25025	0.00010258	3.9549	0.0016211	4.2051	0.0017237	409.8961092406398	34.514	0.61754	34.509	34.19	34.807	-0.0045624					23	15	2	0	0	0	0.03519	1	2569	2569		30.569	3.8192	1	203130			7232	9148	4631	4649	8781	8781					0.05763569592204476
DKQRSIQPAPH	11	Unmodified	_DKQRSIQPAPH_					0	0	0			REV__LRIG2|p.W635R|1|0.22|ENSG00000198799|chr1:113112583-113112583|T/C|missense_variant	REV__LRIG2|p.W635R|1|0.22|ENSG00000198799|chr1:113112583-113112583|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.7752380371094	3	426.230071	1275.66838	0.065671	2.7991E-05	3.5902	0.0015303	3.6559	0.0015582	426.23167800642966	42.366	0.86657	42.136	41.688	42.555	-0.2303					33	23	2	0	0	0	0.024735	1	3755	3755		21.78	12.134	1	207850	+		7233	36325	4632	4650	8782	8782					0.04157507543573047
DKQSEHLQ	8	Unmodified	_DKQSEHLQ_					0	0	0			REV__ENST00000483662.2_1_11:70266591-70267883:+|nuORF	REV__ENST00000483662.2_1_11:70266591-70267883:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.3034973144531	2	492.740888	983.467223	-0.3041	-0.00014984	-2.568	-0.0012654	-2.8721	-0.0014152	492.7397157728249	31.681	0.47865	31.693	31.505	31.984	0.011799					21	11	2	0	0	0	0.027866	1	2143	2143		62.107	0	1	348270	+		7234	19629	4633	4651	8783	8783					-0.025171814929535685
DKQSELRAL	9	Unmodified	_DKQSELRAL_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3035278320312	2	530.293288	1058.57202	-0.41794	-0.00022163	-0.047402	-2.5137E-05	-0.46534	-0.00024677	530.2932049638043	31.334	0.47847	31.403	31.208	31.686	0.06896					17	11	2	0	0	0	0.024447	1	2029	2029		49.442	16.629	1	53866			7235	10263	4634	4652	8784	8784					0.04507939983614051
DKQSFVAVG	9	Unmodified	_DKQSFVAVG_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MSMS	OPSCC_40_ClassI_Rep-3	6	475.7510986328125	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.607	1	20.383	19.883	20.883	-0.22344								0	0	0	0.37385	1	541	541		63.306	7.8021	1		+		7236	24589	4635	4653	8785	8785					0.010131945178159185
DKQSLWDIIE	10	Unmodified	_DKQSLWDIIE_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.232421875	3	416.215316	1245.62412	-0.20624	-8.5839E-05	2.1959	0.00091398	1.9897	0.00082814	416.2169350147089	40.181	0.38304	39.956	39.658	40.041	-0.225					18	9	3	0	0	0	0.03519	1	3407	3407		22.562	14.527	1	304090	+		7237	21307	4636	4654	8786	8786					0.011130586067110926
DKQSLWDIIE	10	Unmodified	_DKQSLWDIIE_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	416.215316	1245.62412	-0.65928	-0.0002744	2.8795	0.0011985	2.2202	0.00092408	416.21654388268615	40.299	0.3859	40.068	39.811	40.197	-0.2302	0.12632	0.0011671	NaN	22.562	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253100	+		7238	21307	4636	4654							0.011130586067110926
DKQTMTRPL	9	Unmodified	_DKQTMTRPL_					0	0	0			REV__ENSG00000066044|ENST00000407627|ELAVL1	REV__ENSG00000066044|ENST00000407627|ELAVL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7952270507812	2	545.289691	1088.56483	0.16535	9.0165E-05	-1.6216	-0.00088423	-1.4562	-0.00079406	545.2891126712984	55.445	0.8856	55.445	55.149	56.035	0					38	24	3	0	0	0	0.021513	1	6077	6077		104.75	14.377	1	157250	+		7239	20328	4637	4655	8787	8787					0.024088841115371906
DKQVNRGLW	9	Unmodified	_DKQVNRGLW_					0	0	0		SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|46|1|anti-sense	SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|46|1|anti-sense	SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|46|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.3216552734375	2	558.301447	1114.58834	-0.7188	-0.00040131	0.10134	5.6577E-05	-0.61747	-0.00034473	558.301097806794	28.491	0.49459	28.339	28.203	28.698	-0.15195					13	11	2	0	0	0	0.024487	1	1692	1692		6.7355	0	1	84193			7240	38020	4638	4656	8788	8788					0.03563065940375054
DKQVVELPF	9	Unmodified	_DKQVVELPF_					0	0	0			REV__ENSG00000196083|ENST00000447382|IL1RAP	REV__ENSG00000196083|ENST00000447382|IL1RAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2434692382812	2	537.795132	1073.57571	-1.2695	-0.00068271	-0.9064	-0.00048746	-2.1759	-0.0011702	537.7969658505245	55.54	0.67034	55.324	54.931	55.602	-0.21551					25	18	2	0	0	0	0.024261	1	5995	5995		54.776	0	1	136570	+		7241	28123	4639	4657	8789	8789					0.04186609757448423
DKQYHLSI	8	Unmodified	_DKQYHLSI_					0	0	0			REV__nc|ENSG00000117586|P23510-2|TNFSF4	REV__nc|ENSG00000117586|P23510-2|TNFSF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7113952636719	2	502.263999	1002.51345	-0.80782	-0.00040574	0.54705	0.00027476	-0.26078	-0.00013098	502.26423266382454	48.578	0.84487	48.479	48.148	48.993	-0.099781					44	22	3	0	0	0	0.027866	1	4820	4820		29.15	14.285	1	497550	+		7242	22355	4640	4658	8790	8790					0.012288834091350509
DKQYHLSI	8	Unmodified	_DKQYHLSI_					0	0	0			REV__nc|ENSG00000117586|P23510-2|TNFSF4	REV__nc|ENSG00000117586|P23510-2|TNFSF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.263999	1002.51345	-0.72295	-0.00036311	0.53014	0.00026627	-0.19281	-9.6842E-05	502.26399136681493	48.906	0.57964	48.626	48.394	48.973	-0.27977	0.061665	7.9849E-05	NaN	15.642	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761040	+		7243	22355	4640	4658							0.012288834091350509
DKQYHLSI	8	Unmodified	_DKQYHLSI_					0	0	0			REV__nc|ENSG00000117586|P23510-2|TNFSF4	REV__nc|ENSG00000117586|P23510-2|TNFSF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.263999	1002.51345	-0.54131	-0.00027188	0.28912	0.00014522	-0.25218	-0.00012666	502.2639775560879	48.77	0.87405	48.588	48.126	49	-0.18206	0.023882	-0.00016226	NaN	15.642	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654580	+		7244	22355	4640	4658							0.012288834091350509
DKQYMRVLQ	9	Unmodified	_DKQYMRVLQ_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.80908203125	2	590.81079	1179.60703	0.77062	0.00045529	-4.0086	-0.0023683	-3.238	-0.001913	590.8083306486845	58.923	1.5797	59.009	58.63	60.21	0.085682					114	42	5	0	0	0	0.23085	1	6635	6635		84.916	5.4645	1	6117600	+		7245	26872	4641	4659	8791	8791					0.02440859519924743
DKRDRPAQAR	10	Unmodified	_DKRDRPAQAR_					0	0	0			REV__ENSG00000188522|ENST00000388995|FAM83G	REV__ENSG00000188522|ENST00000388995|FAM83G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5598449707031	3	404.890048	1211.64832	0.40323	0.00016326	-0.31507	-0.00012757	0.088158	3.5694E-05	404.8898107794777	33.79	0.97932	33.566	33.239	34.219	-0.22412					55	24	3	0	0	0	0.03519	1	2392	2392		17.833	0	1	399680	+		7246	28042	4642	4660	8792	8792					0.050957566035776836
DKRGGPILT	9	Unmodified	_DKRGGPILT_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;TRIO-PPP2R5E|1|fusion;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2354431152344	2	478.779816	955.545079	-0.13309	-6.3719E-05	0.16273	7.7912E-05	0.029644	1.4193E-05	478.77972673231255	45.208	0.58029	45.252	44.966	45.546	0.04388					30	16	2	0	0	0	0.024397	1	4271	4271		39.253	1.4413	1	1194800			7247	1053;6785	4643	4661	8793	8793					0.0655287616308442
DKRGRATKFSQ	11	Unmodified	_DKRGRATKFSQ_					0	0	0		ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.72930908203125	3	431.905587	1292.69493	-0.18814	-8.1259E-05	-2.9738	-0.0012844	-3.162	-0.0013657	431.90425384166997	39.511	0.75205	39.347	38.862	39.614	-0.16458					27	19	2	0	0	0	0.024746	1	3284	3284		15.921	2.9632	1	178810			7248	16900	4644	4662	8794	8794					0.060291964349062255
DKRGRATKFSQ	11	Unmodified	_DKRGRATKFSQ_					0	0	0		ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	431.905587	1292.69493	-0.19863	-8.579E-05	-3.2727	-0.0014135	-3.4713	-0.0014993	431.90426459214837	39.661	0.69907	39.438	38.999	39.698	-0.22311	0.03984	-9.0225E-05	NaN	7.6794	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218170			7249	16900	4644	4662							0.060291964349062255
DKRGRATKFSQ	11	Unmodified	_DKRGRATKFSQ_					0	0	0		ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	ENST00000564697.1_1_6:164506107-164506446:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	431.905587	1292.69493	0.33699	0.00014555	-3.5774	-0.0015451	-3.2404	-0.0013996	432.2381997623936	39.64	0.75351	39.41	39.018	39.771	-0.23021	0.011709	-0.00048505	NaN	7.6794	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227090			7250	16900	4644	4662							0.060291964349062255
DKRHDSLL	8	Unmodified	_DKRHDSLL_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant	REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2665710449219	2	492.267073	982.519593	-0.23364	-0.00011501	0.48708	0.00023977	0.25344	0.00012476	492.2669179923295	37.045	0.99952	37.078	36.678	37.677	0.032269					73	25	4	0	0	0	0.68164	1	2958	2958		68.787	0	1	11695000	+		7251	36427;19808;36193	4645	4663	8795	8795					0.027634016406636874
DKRKRDLV	8	Unmodified	_DKRKRDLV_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF;LRRK2|p.I1380V|1|0.25|ENSG00000188906|chr12:40308645-40308645|A/G|missense_variant	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.3130493164062	2	515.311815	1028.60908	-0.2248	-0.00011584	2.1135	0.0010891	1.8887	0.00097329	515.3128662198355	68.197	1.2925	68.197	67.606	68.898	0					93	33	4	0	0	0	0.89627	1	8209	8209		51.335	1.7994	1	25876000			7252	9764	4646	4664	8796	8796					0.09591656320026232
DKRNLTALP	9	Unmodified	_DKRNLTALP_					0	0	0		GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA	GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant	GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2879638671875	2	514.298373	1026.58219	-0.90312	-0.00046447	0.96136	0.00049442	0.058241	2.9953E-05	514.298702691393	34.245	0.27161	34.069	33.896	34.168	-0.17557					9	6	2	0	0	0	0.024466	1	2505	2505		25.45	0	1	70952			7253	9419	4647	4665	8797	8797					0.06996547708831713
DKRRDYLY	8	Unmodified	_DKRRDYLY_					0	0	0		ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000497138.5_1_20:56807969-56820980:-|nuORF	ENST00000493688.5_1_20:56813265-56820980:-|nuORF	ENST00000493688.5_1_20:56813265-56820980:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2664794921875	2	564.793455	1127.57236	0.029659	1.6751E-05	3.4127	0.0019275	3.4423	0.0019442	564.7952694331195	75.753	0.81879	75.578	75.312	76.131	-0.17548					55	20	5	0	0	0	0.027866	1	9040	9040		11.511	2.3281	1	1159400			7254	15511	4648	4666	8798	8798					0.013673597034767226
DKRRLGKK	8	Unmodified	_DKRRLGKK_					0	0	0			REV__ENSG00000214042|ENST00000239347|IFNA7	REV__ENSG00000214042|ENST00000239347|IFNA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7961730957031	2	500.82235	999.630147	-0.035374	-1.7716E-05	2.7425	0.0013735	2.7071	0.0013558	500.8238714667968	67.037	0.78707	67.061	66.643	67.43	0.023911					33	18	3	0	0	0	0.027866	1	7871	7871		17.365	3.5896	1	726890	+		7255	28767	4649	4667	8799	8799					0.130316664195675
DKRRSLNS	8	Unmodified	_DKRRSLNS_					0	0	0		ENSG00000143674|ENST00000366624|MAP3K21;nc|ENSG00000143674|Q5TCX8-2|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7508239746094	2	488.270147	974.525741	-0.087153	-4.2554E-05	1.921	0.00093799	1.8339	0.00089544	488.27104454635435	75.969	0.5795	75.71	75.358	75.937	-0.25865					19	14	2	0	0	0	0.027866	1	8997	8997		62.107	0	1	85423			7256	5679	4650	4668	8800	8800					0.03745919872187642
DKRSFIPSL	9	Unmodified	_DKRSFIPSL_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.795654296875	2	531.800749	1061.58694	0.59664	0.00031729	-4.0006	-0.0021275	-3.404	-0.0018102	531.7985670672429	98.828	1.2682	98.704	98.373	99.641	-0.12428					44	25	3	0	0	0	0.75397	1	12240	12240		42.396	5.237	1	248340			7257	10949	4651	4669	8801	8801					0.05861431851622001
DKRVKKLP	8	Unmodified	_DKRVKKLP_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000469947.5_1_22:38037007-38038623:+|nuORF;ENST00000495174.5_1_22:38037392-38038915:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2587585449219	2	492.321651	982.62875	0.32672	0.00016085	-1.3364	-0.00065795	-1.0097	-0.0004971	492.3206658312146	41.488	0.32262	41.488	41.292	41.615	0					13	8	2	0	0	0	0.027866	1	3749	3749		25.45	0	1	166360			7258	2130	4652	4670	8802	8802					0.136740323308004
DKSARVLQT	9	Unmodified	_DKSARVLQT_					0	0	0			REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant;REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.302001953125	2	509.288005	1016.56146	0.14032	7.1461E-05	4.3169	0.0021985	4.4572	0.00227	509.290028379858	55.824	0.63404	55.824	55.573	56.207	0					23	17	2	0	0	0	0.024181	1	6241	6241		63.534	0	1	439390	+		7259	23043;19264	4653	4671	8803	8803					0.053839573291725173
DKSHTWET	8	Unmodified	_DKSHTWET_					0	0	0			REV__ENST00000507029.5_1_5:76758971-76788082:-|nuORF	REV__ENST00000507029.5_1_5:76758971-76788082:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.23193359375	2	502.227613	1002.44067	-0.91647	-0.00046027	0.075752	3.8045E-05	-0.84071	-0.00042223	502.2272981366467	38.509	0.59859	38.509	38.199	38.797	0					27	15	2	0	0	0	0.027866	1	3202	3202		51.335	8.9393	1	175700	+		7260	34041	4654	4672	8804	8804					-0.06044870384289425
DKSKKRIP	8	Unmodified	_DKSKKRIP_					0	0	0			REV__ENSG00000102034|ENST00000308167|ELF4	REV__ENSG00000102034|ENST00000308167|ELF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.77178955078125	2	486.303458	970.592364	0.18623	9.0563E-05	3.4412	0.0016735	3.6274	0.001764	486.30511191641307	76.587	0.67911	76.335	76.103	76.782	-0.25162					23	15	2	0	0	0	0.027866	1	9069	9069		30.504	0	1	388740	+		7261	21279	4655	4673	8805	8805					0.10589155434081476
DKSKTPRSP	9	Unmodified	_DKSKTPRSP_					0	0	0			REV__ENSG00000103449|ENST00000251020|SALL1	REV__ENSG00000103449|ENST00000251020|SALL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2720947265625	2	508.28018	1014.54581	0.1315	6.6838E-05	4.3492	0.0022106	4.4807	0.0022775	508.28193154146027	50.362	0.40862	50.256	50.049	50.457	-0.10558					13	10	2	0	0	0	0.023835	1	5086	5086		61.691	0.71934	1	259920	+		7262	21386	4656	4674	8806	8806					0.039116708121468946
DKSKVSDVK	9	Unmodified	_DKSKVSDVK_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2741394042969	2	503.282389	1004.55022	-0.4394	-0.00022114	3.0796	0.0015499	2.6402	0.0013288	503.28416883303095	91.562	0.63207	91.549	91.115	91.748	-0.012383					30	14	3	0	0	0	0.024323	1	11525	11525		35.618	0	1	572200	+		7263	27336	4657	4675	8807	8807					0.04813135235053778
DKSLELAGH	9	Unmodified	_DKSLELAGH_					0	0	0		ENSG00000180053|ENST00000325017|NKX2-6	ENSG00000180053|ENST00000325017|NKX2-6	ENSG00000180053|ENST00000325017|NKX2-6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.30804443359375	2	485.253631	968.49271	0.28116	0.00013643	3.5161	0.0017062	3.7973	0.0018426	485.2553187637059	78.949	0.47053	78.694	78.427	78.898	-0.25471					18	10	2	0	0	0	0.024263	1	9401	9401		34.173	0	1	123690			7264	8956	4658	4676	8808	8808					0.007202930294738508
DKSNVKAY	8	Unmodified	_DKSNVKAY_					0	0	0			REV__ENSG00000267060|ENST00000591916|PTGES3L	REV__ENSG00000267060|ENST00000591916|PTGES3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.26904296875	2	462.742899	923.471246	-0.55932	-0.00025882	-0.44397	-0.00020544	-1.0033	-0.00046426	462.74238476506525	45.303	0.88974	45.154	44.593	45.483	-0.1488					41	25	2	0	0	0	0.027866	1	4431	4431		3.6843	0	1	136990	+		7265	29145	4659	4677	8809	8809					0.006449080007541852
DKSPPFKW	8	Unmodified	_DKSPPFKW_					0	0	0			REV__nc|ENSG00000086827|O43264-2|ZW10	REV__nc|ENSG00000086827|O43264-2|ZW10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7796936035156	2	502.763635	1003.51272	-0.42449	-0.00021342	3.17	0.0015938	2.7456	0.0013804	502.7641598732586	53.439	0.51572	53.242	52.973	53.489	-0.19739					28	13	3	0	0	0	0.027866	1	5597	5597		44.117	3.3386	1	209240	+		7266	20778	4660	4678	8810	8810					0.01110088760083272
DKSQMCGVL	9	Unmodified	_DKSQMCGVL_					0	0	0			REV__nc|ENSG00000100243|P00387-3|CYB5R3	REV__nc|ENSG00000100243|P00387-3|CYB5R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.730224609375	2	490.73062	979.446687	-0.44644	-0.00021908	-0.68062	-0.000334	-1.1271	-0.00055308	490.73033993046215	27.567	1.326	27.554	27.205	28.531	-0.012983					86	33	4	0	0	0	0.35646	1	1517	1517		68.787	0.30212	1	3762700	+		7267	36516	4661	4679	8811	8811					-0.0438581146861452
DKSQMCGVL	9	Unmodified	_DKSQMCGVL_					0	0	0			REV__nc|ENSG00000100243|P00387-3|CYB5R3	REV__nc|ENSG00000100243|P00387-3|CYB5R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.7301330566406	2	490.73062	979.446687	-1.1477	-0.0005632	-0.059329	-2.9114E-05	-1.207	-0.00059231	490.7308505250967	27.257	1.2122	27.338	26.996	28.208	0.081291					77	31	5	0	0	0	0.39228	1	1421	1421		66.429	3.123	1	3910900	+		7268	36516	4661	4679	8812	8812					-0.0438581146861452
DKSREFIT	8	Unmodified	_DKSREFIT_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7956848144531	2	498.261456	994.50836	-0.49882	-0.00024854	0.32427	0.00016157	-0.17455	-8.6972E-05	498.2614603704591	56.395	0.58071	56.231	55.806	56.387	-0.16431					19	15	2	0	0	0	0.027866	1	6269	6269		24.203	0	1	186590	+		7269	28058	4662	4680	8813	8813					0.010885795465128467
DKSRKGELL	9	Unmodified	_DKSRKGELL_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3032836914062	2	523.303655	1044.59276	0.47324	0.00024765	-0.96385	-0.00050438	-0.49061	-0.00025674	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.93097	1	10519	10519		30.318	3.5216	1	13836000			7270	10092	4663	4681	8814	8814					0.07224530363305348
DKSTHKTF	8	Unmodified	_DKSTHKTF_					0	0	0			REV__ENSG00000118965|ENST00000281405|WDR35	REV__ENSG00000118965|ENST00000281405|WDR35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.76129150390625	2	482.248349	962.482145	-0.2529	-0.00012196	1.0814	0.00052149	0.82848	0.00039953	482.24890482688886	42.04	0.46841	42.066	41.821	42.289	0.026012					18	13	2	0	0	0	0.027866	1	3770	3770		21.96	0	1	84476	+		7271	22433	4664	4682	8815	8815					-0.0005968962494762309
DKSVGDDWYL	10	Unmodified	_DKSVGDDWYL_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	599.8429565429688	2	599.274761	1196.53497	-0.83834	-0.0005024	3.7815	0.0022662	2.9432	0.0017638	599.276776130953	64.293	0.55202	64.293	64.026	64.578	0					27	14	2	0	0	0	0.03519	1	7593	7593		47.657	15.702	1	310800	+		7272	29092	4665	4683	8816	8816					-0.05543776352783425
DKSVRVKLQ	9	Unmodified	_DKSVRVKLQ_					0	0	0			REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.826416015625	2	536.827298	1071.64004	-0.419	-0.00022493	0.20708	0.00011117	-0.21192	-0.00011376	536.8273199019792	42.789	0.61943	42.815	42.605	43.224	0.026012					47	16	4	0	0	0	0.48817	1	3908	3908		60.118	0	1	1709300	+		7273	29531	4666	4684	8817	8817					0.10708809634297722
DKSVRVKLQ	9	Unmodified	_DKSVRVKLQ_					0	0	0			REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.827298	1071.64004	-0.38328	-0.00020576	0.13747	7.3797E-05	-0.24581	-0.00013196	536.8273363641748	42.668	0.71977	42.668	42.355	43.075	0	-0.05343	-0.00021225	NaN	60.118	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1898300	+		7274	29531	4666	4684							0.10708809634297722
DKSVRVKLQ	9	Unmodified	_DKSVRVKLQ_					0	0	0			REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.827298	1071.64004	-0.44696	-0.00023994	0.20824	0.00011179	-0.23872	-0.00012815	536.8273816802927	42.865	0.68983	42.726	42.484	43.174	-0.13929	0.0045825	-0.00013626	NaN	60.118	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1851000	+		7275	29531	4666	4684							0.10708809634297722
DKSVRVKLQ	9	Unmodified	_DKSVRVKLQ_					0	0	0			REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	536.827298	1071.64004	-0.419	-0.00022493	0.20708	0.00011117	-0.21192	-0.00011376	536.8273199019792	42.789	0.61943	42.815	42.605	43.224	0.026012	0.093712	-0.0001375	NaN	60.118	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1709300	+		7276	29531	4666	4684							0.10708809634297722
DKSVRVKLQ	9	Unmodified	_DKSVRVKLQ_					0	0	0			REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.827298	1071.64004	-0.35506	-0.00019061	0.23584	0.00012661	-0.11922	-6.3999E-05	536.8273089066079	42.785	0.57115	42.672	42.391	42.962	-0.11253	-0.048504	-0.00010663	NaN	60.118	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1064400	+		7277	29531	4666	4684							0.10708809634297722
DKSVRVKLQ	9	Unmodified	_DKSVRVKLQ_					0	0	0			REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.827298	1071.64004	-0.66306	-0.00035595	0.46366	0.00024891	-0.1994	-0.00010704	536.8274844424617	42.934	0.5721	42.697	42.452	43.024	-0.23736	-0.024244	0.00013797	NaN	60.118	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	973460	+		7278	29531	4666	4684							0.10708809634297722
DKSVRVKLQ	9	Unmodified	_DKSVRVKLQ_					0	0	0			REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	REV__ENST00000254691.9_2_5:40853406-40853502:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.827298	1071.64004	-1.2078	-0.0006484	1.0272	0.00055144	-0.18061	-9.6959E-05	536.827761962529	42.975	0.5785	42.749	42.447	43.025	-0.22597	0.027884	0.00074303	NaN	60.118	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1051400	+		7279	29531	4666	4684							0.10708809634297722
DKSWKGSL	8	Unmodified	_DKSWKGSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.2799072265625	2	460.745442	919.476331	0.26302	0.00012119	0.86135	0.00039686	1.1244	0.00051805	460.7455253879585	42.611	0.21748	42.611	42.497	42.715	0					9	5	2	0	0	0	0.027866	1	3922	3922		35.618	0	1	56095			7280	4177	4667	4685	8818	8818					0.013372118633924401
DKTCSYWKMS	10	Unmodified	_DKTCSYWKMS_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8912353515625	3	416.851103	1247.53148	-0.40486	-0.00016876	0.46803	0.0001951	0.063176	2.6335E-05	416.85119316543415	33.651	0.42501	33.451	33.209	33.634	-0.20019					16	10	2	0	0	0	0.03519	1	2421	2421		14.694	0	1	117040			7281	4536	4668	4686	8819	8819					-0.08238485722699807
DKTEGTLLD	9	Unmodified	_DKTEGTLLD_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2955017089844	2	496.250754	990.486955	0.49622	0.00024625	-0.032032	-1.5896E-05	0.46418	0.00023035	496.25061304573103	61.194	0.83585	61.194	60.884	61.72	0					48	21	3	0	0	0	0.024344	1	7072	7072		54.776	0	1	2696400	+		7282	22985	4669	4687	8820	8820					-0.00866850272859665
DKTIPKYF	8	Unmodified	_DKTIPKYF_					0	0	0			REV__nc|ENSG00000174325|Q969H9|DIRC1	REV__nc|ENSG00000174325|Q969H9|DIRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.26605224609375	2	506.279118	1010.54368	-1.2618	-0.00063883	2.7813	0.0014081	1.5195	0.00076927	506.28042593653936	62.692	0.47065	62.452	62.35	62.821	-0.23926					16	12	2	0	0	0	0.027866	1	7273	7273		35.618	7.736	1	335200	+		7283	36952	4670	4688	8821	8821					0.03883242074323334
DKTLNIFIN	9	Unmodified	_DKTLNIFIN_					0	0	0			REV__ENST00000548855.5_1_12:54966399-54967542:+|nuORF	REV__ENST00000548855.5_1_12:54966399-54967542:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8242797851562	2	539.300581	1076.58661	-1.0896	-0.00058764	-0.1135	-6.1213E-05	-1.2031	-0.00064885	539.3004407561945	48.397	0.64939	48.244	47.891	48.54	-0.15301					25	18	2	0	0	0	0.024367	1	4935	4935		62.107	0	1	1234700	+		7284	22691	4671	4689	8822	8822					0.05138012131760661
DKTLNIFIN	9	Unmodified	_DKTLNIFIN_					0	0	0			REV__ENST00000548855.5_1_12:54966399-54967542:+|nuORF	REV__ENST00000548855.5_1_12:54966399-54967542:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.300581	1076.58661	-1.172	-0.00063205	2.8225	0.0015222	1.6505	0.00089014	539.3020033011654	48.309	0.3704	48.033	47.851	48.222	-0.27598	-0.10559	0.00047828	NaN	90.37	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187480	+		7285	22691	4671	4689							0.05138012131760661
DKTLNLSKT	9	Unmodified	_DKTLNLSKT_					0	0	0		ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2818908691406	2	510.290214	1018.56587	-0.39228	-0.00020018	-2.1034	-0.0010733	-2.4957	-0.0012735	510.78976353173294	95.398	0.85634	95.398	95.093	95.95	0					30	19	2	0	0	0	0.024457	1	12220	12220		10.265	3.5297	1	98726			7286	9370	4672	4690	8823	8823					0.057334217520860875
DKTLYHPV	8	Unmodified	_DKTLYHPV_					0	0	0		nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;ENST00000520647.5_1_5:153789305-153796529:+|nuORF	nc|ENSG00000164574|Q86SR1-2|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.8050537109375	2	486.761092	971.507631	-0.56169	-0.00027341	-0.70064	-0.00034105	-1.2623	-0.00061445	486.75906150210443	34.733	0.96468	34.733	34.129	35.093	0					55	24	5	0	0	0	0.027866	1	2601	2601		55.504	0	1	445110			7287	7292	4673	4691	8824	8824					0.02073784897470432
DKTNKSKLV	9	Unmodified	_DKTNKSKLV_					0	0	0			REV__ENSG00000179562|ENST00000321407|GCC1	REV__ENSG00000179562|ENST00000321407|GCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2896118164062	2	516.806031	1031.59751	-1.3497	-0.00069751	1.9678	0.001017	0.61815	0.00031946	516.8069043816799	34.296	0.79735	34.346	33.965	34.762	0.050255					45	19	3	0	0	0	0.024427	1	2446	2446		26.693	3.6504	1	1119300	+		7288	27275	4674	4692	8825	8825					0.08297414506023415
DKTPKKAQV	9	Unmodified	_DKTPKKAQV_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7989501953125	2	507.800749	1013.58694	-0.1748	-8.8762E-05	0.67329	0.0003419	0.4985	0.00025314	507.8010365610624	57.784	0.92695	57.784	57.266	58.193	0					58	24	4	0	0	0	0.247	1	6518	6518		82.75	6.5808	1	10932000			7289	1216	4675	4693	8826	8826					0.08069431851606623
DKTQLKLLS	9	Unmodified	_DKTQLKLLS_					0	0	0			REV__nc|ENSG00000249481|Q496A3-2|SPATS1	REV__nc|ENSG00000249481|Q496A3-2|SPATS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2575073242188	2	523.316232	1044.61791	-0.80326	-0.00042036	0.079459	4.1582E-05	-0.7238	-0.00037878	523.3162080291883	23.415	0.49089	23.355	23.152	23.643	-0.06086					17	11	2	0	0	0	0.024477	1	917	917		35.618	12.576	1	84402	+		7290	29016	4676	4694	8827	8827					0.09738585165860059
DKTQLKLLS	9	Unmodified	_DKTQLKLLS_					0	0	0			REV__nc|ENSG00000249481|Q496A3-2|SPATS1	REV__nc|ENSG00000249481|Q496A3-2|SPATS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2571411132812	2	523.316232	1044.61791	-0.44023	-0.00023038	-1.4518	-0.00075976	-1.8921	-0.00099014	523.315567083002	23.294	0.45647	23.37	23.234	23.69	0.076241					19	10	2	0	0	0	0.024447	1	871	871		32.812	4.9302	1	75328	+		7291	29016	4676	4694	8828	8828					0.09738585165860059
DKTRNIHHI	9	Unmodified	_DKTRNIHHI_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|80|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|80|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.766845703125	2	567.312346	1132.61014	-0.40603	-0.00023034	0.90709	0.00051461	0.50107	0.00028426	567.3121505612503	41.095	0.73769	41.095	40.623	41.36	0					41	20	3	0	0	0	0.02435	1	3595	3595		42.396	5.237	1	256750	+		7292	36260	4677	4695	8829	8829					0.049138706889380046
DKTSRSIL	8	Unmodified	_DKTSRSIL_					0	0	0			REV__ENSG00000112144|ENST00000676107|CILK1	REV__ENSG00000112144|ENST00000676107|CILK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.27130126953125	2	460.263999	918.513445	-0.69622	-0.00032044	1.5457	0.00071143	0.84948	0.00039099	460.2646325067357	43.532	0.43235	43.532	43.404	43.836	0					27	11	3	0	0	0	0.027866	1	4073	4073		24.203	1.1603	1	695250	+		7293	21971	4678	4696	8830	8830					0.050928834091337194
DKTVILNI	8	Unmodified	_DKTVILNI_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7;nc|ENSG00000216937|Q96M83-2|CCDC7;nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;nc|ENSG00000216937|Q96M83-5|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2689514160156	2	458.279118	914.543683	-0.35359	-0.00016204	0.81487	0.00037344	0.46127	0.00021139	458.2795497074714	48.667	0.60242	48.514	48.227	48.829	-0.15277					25	16	3	0	0	0	0.027866	1	4912	4912		42.474	18.272	1	241480			7294	10599	4679	4697	8831	8831					0.08299242074315316
DKTVKVLNI	9	Unmodified	_DKTVKVLNI_					0	0	0		NIPBL-WDR70|1|fusion;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2919311523438	2	515.318774	1028.623	-0.0048937	-2.5218E-06	-0.42622	-0.00021964	-0.43111	-0.00022216	515.3183499847828	39.969	0.47905	39.969	39.696	40.176	0					20	12	2	0	0	0	0.024427	1	3495	3495		34.173	3.6689	1	410010			7295	18873	4680	4698	8832	8832					0.10982889028446152
DKVCIGKIL	9	Unmodified	_DKVCIGKIL_					0	0	0			REV__ENSG00000156398|ENST00000369893|SFXN2	REV__ENSG00000156398|ENST00000369893|SFXN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.8056335449219	2	494.79662	987.578688	-0.30277	-0.00014981	-1.6836	-0.00083302	-1.9863	-0.00098283	494.7952980722127	39.748	0.39366	39.525	39.343	39.736	-0.22311					14	9	2	0	0	0	0.024506	1	3361	3361		23.042	9.2672	1	124620	+		7296	25073	4681	4699	8833	8833					0.08440161610644736
DKVDVLNQV	9	Unmodified	_DKVDVLNQV_					0	0	0		nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3340454101562	2	515.282389	1028.55022	-0.68355	-0.00035222	-2.6636	-0.0013725	-3.3471	-0.0017247	515.2815329122708	50.179	0.86368	50.179	49.582	50.445	0					35	24	2	0	0	0	0.017396	1	5139	5139		90.37	9.9152	1	230960			7297	3089;16559	4682	4700	8834	8834					0.03709135235044414
DKVDYVLDL	9	Unmodified	_DKVDYVLDL_					0	0	0			REV__ENSG00000146221|ENST00000371505|TCTE1	REV__ENSG00000146221|ENST00000371505|TCTE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.2947998046875	2	540.284597	1078.55464	-1.4123	-0.00076303	2.2848	0.0012345	0.87258	0.00047144	540.7869489379934	81.068	0.51582	80.937	80.619	81.135	-0.13075					18	12	2	0	0	0	0.024313	1	10060	10060		42.864	23.761	1	174880	+		7298	24470	4683	4701	8835	8835					0.018505996579506245
DKVDYVLDL	9	Unmodified	_DKVDYVLDL_					0	0	0			REV__ENSG00000146221|ENST00000371505|TCTE1	REV__ENSG00000146221|ENST00000371505|TCTE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2947998046875	2	540.284597	1078.55464	-1.6034	-0.00086631	2.4381	0.0013173	0.83464	0.00045095	540.2858663142578	80.822	0.42986	80.846	80.656	81.086	0.023903					18	10	2	0	0	0	0.024337	1	9971	9971		49.536	20.386	1	161760	+		7299	24470	4683	4701	8836	8836					0.018505996579506245
DKVFNDYTA	9	Unmodified	_DKVFNDYTA_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3076782226562	2	536.750921	1071.48729	-0.39194	-0.00021037	2.9781	0.0015985	2.5861	0.0013881	536.7525106925187	67.954	1.089	67.972	67.225	68.314	0.018913					39	27	2	0	0	0	0.023454	1	8097	8097		82.241	30.905	1	176910			7300	680	4684	4702	8837	8837					-0.04559430552990307
DKVFNDYTA	9	Unmodified	_DKVFNDYTA_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.750921	1071.48729	-0.36952	-0.00019834	2.8236	0.0015156	2.4541	0.0013172	536.7523342632089	68.024	0.98881	67.736	67.148	68.136	-0.28834	-0.030405	0.00013081	NaN	82.241	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148010			7301	680	4684	4702							-0.04559430552990307
DKVFNDYTA	9	Unmodified	_DKVFNDYTA_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.750921	1071.48729	0.67647	0.00036309	0.9532	0.00051163	1.6297	0.00087473	537.2530389644672	68.042	0.20303	67.787	67.7	67.903	-0.25517	0.021253	-0.001877	NaN	82.241	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37297			7302	680	4684	4702							-0.04559430552990307
DKVFYAPV	8	Unmodified	_DKVFYAPV_					0	0	0		nc|ENSG00000178882|Q6ZTI6-2|RFLNA;ENSG00000178882|ENST00000546355|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.7503967285156	2	469.752736	937.490919	-0.84285	-0.00039593	-3.4971	-0.0016428	-4.34	-0.0020387	469.7509259080835	30.43	1.8965	30.43	29.814	31.71	0					109	45	4	0	0	0	0.94517	1	1952	1952		45.952	1.5748	1	1096100			7303	8841	4685	4703	8838	8838					0.019672840115163126
DKVFYAPV	8	Unmodified	_DKVFYAPV_					0	0	0		nc|ENSG00000178882|Q6ZTI6-2|RFLNA;ENSG00000178882|ENST00000546355|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.75054931640625	2	469.752736	937.490919	-0.17104	-8.0345E-05	-4.277	-0.0020091	-4.448	-0.0020895	469.7506065831071	30.336	1.8234	30.345	29.797	31.621	0.0086708					137	43	5	0	0	0	0.71833	1	1942	1942		65.803	3.6958	1	1093700			7304	8841	4685	4703	8839	8839					0.019672840115163126
DKVKKIAEV	9	Unmodified	_DKVKKIAEV_					0	0	0			REV__nc|ENSG00000133878|Q9BV47-2|DUSP26	REV__nc|ENSG00000133878|Q9BV47-2|DUSP26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2879028320312	2	515.318774	1028.623	-0.16392	-8.4472E-05	-0.96597	-0.00049778	-1.1299	-0.00058225	515.3181163992725	34.261	0.495	34.054	33.789	34.284	-0.20695					27	12	3	0	0	0	0.024344	1	2530	2530		54.776	5.3348	1	321310	+		7305	23402	4686	4704	8840	8840					0.10982889028446152
DKVKLLIVS	9	Unmodified	_DKVKLLIVS_					0	0	0			REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.833251953125	2	507.831517	1013.64848	0.011049	5.6113E-06	3.5165	0.0017858	3.5276	0.0017914	507.83330022638233	106.87	0.43044	106.86	106.67	107.1	-0.0034866					20	13	2	0	0	0	0.89441	1	13683	13683		32.812	3.6629	1	201400	+		7306	20636	4687	4705	8841	8841					0.14220363550919046
DKVKLQSRP	9	Unmodified	_DKVKLQSRP_					0	0	0		ENSG00000108828|ENST00000355653|VAT1	ENSG00000108828|ENST00000355653|VAT1	ENSG00000108828|ENST00000355653|VAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7652587890625	2	535.819473	1069.62439	-1.8937	-0.0010147	1.495	0.00080105	-0.39872	-0.00021364	535.8201953675524	49.111	0.74391	49.186	48.987	49.731	0.074196					35	19	4	0	0	0	0.02435	1	4963	4963		42.396	0	1	703900			7307	2937	4688	4706	8842	8842					0.09236523117260731
DKVLGYAL	8	Unmodified	_DKVLGYAL_					0	0	0		ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2587890625	2	439.752736	877.490919	-0.55524	-0.00024417	1.064	0.00046789	0.50875	0.00022372	439.75296920693876	58.248	0.76457	58.073	57.859	58.623	-0.1749					22	20	2	0	0	0	0.027866	1	6626	6626		35.201	9.7505	1	200990			7308	3015	4689	4707	8843	8843					0.04727284011505617
DKVLLGFL	8	Unmodified	_DKVLLGFL_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.3442687988281	2	452.778754	903.542954	0.45666	0.00020677	4.0279	0.0018238	4.4846	0.0020305	452.77834528938354	100.4	0.35329	100.4	100.17	100.52	-0.0050812					11	7	2	0	0	0	0.027866	1	12739	12739		45.952	0	1	63874	+		7309	20516	4690	4708	8844	8844					0.08732447425290957
DKVLVPLI	8	Unmodified	_DKVLVPLI_					0	0	0			REV__ENSG00000171533|ENST00000304771|MAP6	REV__ENSG00000171533|ENST00000304771|MAP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.7451171875	2	448.794404	895.574254	0.40891	0.00018352	2.2513	0.0010104	2.6602	0.0011939	448.79537493730186	47.481	0.47638	47.328	47.161	47.637	-0.15301					22	13	2	0	0	0	0.027866	1	4754	4754		20.482	11.66	1	134700	+		7310	26579	4691	4709	8845	8845					0.12229020459369622
DKVMTNRVI	9	Unmodified	_DKVMTNRVI_					0	0	0		ENST00000556663.5_1_14:76621367-76638290:+|nuORF	ENST00000556663.5_1_14:76621367-76638290:+|nuORF	ENST00000556663.5_1_14:76621367-76638290:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.824951171875	2	538.300059	1074.58556	-1.0555	-0.00056815	-2.6426	-0.0014225	-3.6981	-0.0019907	538.2985167251495	48.43	0.87658	48.277	48.023	48.9	-0.15301					42	24	2	0	0	0	0.024307	1	4921	4921		72.879	3.2516	1	7772800			7311	16717	4692	4710	8846	8846					0.051254744912057504
DKVNVADILTK	11	Unmodified	_DKVNVADILTK_					0	0	0		ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2	ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.2171325683594	3	405.902961	1214.68705	-0.19512	-7.9201E-05	3.7262	0.0015125	3.5311	0.0014333	405.90481030650034	22.31	0.80703	22.108	21.614	22.421	-0.20199					49	16	4	0	0	0	0.02475	1	745	745		10.562	2.1546	1	215240			7312	5810;87	4693	4711	8847	8847					0.088296243947525
DKVPKDLPP	9	Unmodified	_DKVPKDLPP_					0	0	0		ENSG00000011465|ENST00000052754|DCN;nc|ENSG00000011465|P07585-4|DCN	ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3056335449219	2	504.78985	1007.56515	0.53387	0.00026949	-1.0269	-0.00051835	-0.49299	-0.00024886	504.7897221179527	69.891	0.61214	69.598	69.348	69.96	-0.29291					21	14	2	0	0	0	0.024181	1	8387	8387		72.879	21.544	1	194080			7313	899	4694	4712	8848	8848					0.06166627103038991
DKVQIFTSH	9	Unmodified	_DKVQIFTSH_					0	0	0		ENST00000420509.1_1_2:206951001-206951199:+|nuORF	ENST00000420509.1_1_2:206951001-206951199:+|nuORF	ENST00000420509.1_1_2:206951001-206951199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2440185546875	2	537.782556	1073.55056	-1.0621	-0.00057119	-0.16466	-8.8554E-05	-1.2268	-0.00065974	537.7826796769771	55.884	0.74889	55.728	55.386	56.135	-0.15655					27	19	3	0	0	0	0.023274	1	5990	5990		67.494	6.5217	1	307090			7314	13975	4695	4713	8849	8849					0.016725549548937124
DKVQLAMQT	9	Unmodified	_DKVQLAMQT_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;ENST00000492488.5_1_2:242641480-242651487:+|nuORF;ING5|p.G131Afs*69|1|0.22|ENSG00000168395|chr2:241711484-241711484|A/-|frameshift_variant;ENST00000489509.1_1_2:242641480-242659033:+|nuORF;ENST00000482774.5_1_2:242641480-242659534:+|nuORF;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5	ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000168395|Q8WYH8-2|ING5	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2894897460938	2	517.270967	1032.52738	-0.61566	-0.00031846	3.5144	0.0018179	2.8987	0.0014994	517.2705821375037	33.992	0.55305	33.992	33.739	34.292	0					16	13	2	0	0	0	0.024397	1	2531	2531		39.253	10.103	1	54828			7315	3132;7819	4696	4714	8850	8850					0.01241792845917189
DKVTNETLTLT	11	Unmodified	_DKVTNETLTLT_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.56304931640625	3	412.222359	1233.64525	-0.14183	-5.8466E-05	1.5476	0.00063796	1.4058	0.00057949	412.22283903603886	33.081	0.68664	32.85	32.586	33.273	-0.23107					23	16	2	0	0	0	0.024723	1	2304	2304		14.779	0	1	80929		+	7316	489	4697	4715	8851	8851					0.037770239155634044
DKVTTILID	9	Unmodified	_DKVTTILID_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7752380371094	2	509.294965	1016.57538	-0.44112	-0.00022466	-1.4212	-0.00072382	-1.8623	-0.00094848	509.2952378193841	44.366	0.47777	44.403	44.306	44.783	0.036903					14	13	2	0	0	0	0.024466	1	4178	4178		24.519	0	1	91926	+		7317	25880	4698	4716	8852	8852					0.06775190037626544
DKVVASVK	8	Unmodified	_DKVVASVK_					0	0	0		ENSG00000047410|ENST00000367478|TPR;ENST00000481347.1_1_1:186312376-186313186:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.1620788574219	2	423.258185	844.501818	0.021007	8.8915E-06	1.1379	0.00048162	1.1589	0.00049051	423.25836351553806	31.262	0.45478	31.109	30.887	31.342	-0.15231					14	11	2	0	0	0	0.027866	1	2052	2052		6.7355	3.8061	1	75095			7318	1102	4699	4717	8853	8853					0.07334686385809164
DKVVRTVPN	9	Unmodified	_DKVVRTVPN_					0	0	0			REV__ENSG00000185681|ENST00000373764|MORN5	REV__ENSG00000185681|ENST00000373764|MORN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7535400390625	2	514.298373	1026.58219	-0.43416	-0.00022329	-0.95264	-0.00048994	-1.3868	-0.00071323	514.2981323262578	51.28	0.75046	51.131	50.792	51.542	-0.14916					35	20	3	0	0	0	0.024344	1	5362	5362		37.812	0	1	857780	+		7319	27785	4700	4718	8854	8854					0.0699654770885445
DKWILVIL	8	Unmodified	_DKWILVIL_					0	0	0			REV__nc|ENSG00000230301|Q8NGV6|OR5H6	REV__nc|ENSG00000230301|Q8NGV6|OR5H6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7785339355469	2	500.315503	998.616454	-0.31507	-0.00015763	-3.724	-0.0018632	-4.0391	-0.0020208	500.3133325463361	69.552	0.51795	69.567	69.316	69.834	0.015129					21	12	2	0	0	0	0.027866	1	8325	8325		25.45	0	1	197810	+		7320	28892	4701	4719	8855	8855					0.11708995867752492
DKWKLSLL	8	Unmodified	_DKWKLSLL_					0	0	0			REV__nc|ENSG00000290798|Q9H1B4|NXF5	REV__nc|ENSG00000290798|Q9H1B4|NXF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.28594970703125	2	501.80276	1001.59097	-0.21064	-0.0001057	3.0828	0.0015469	2.8721	0.0014412	501.80414572451684	63.339	0.85116	63.155	62.955	63.807	-0.18386					29	21	2	0	0	0	0.027866	1	7134	7134		42.396	9.5837	1	340960	+		7321	37233	4702	4720	8856	8856					0.09023521345329755
DKWQQYWKS	9	Unmodified	_DKWQQYWKS_					0	0	0			REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF	REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.25830078125	3	423.540134	1267.59857	0.19631	8.3146E-05	0.98834	0.0004186	1.1846	0.00050175	423.87482435476954	32.942	1.0493	32.743	32.199	33.249	-0.19855					33	25	2	0	0	0	0.024541	1	2251	2251		20.837	0	1	75868	+		7322	21488	4703	4721	8857	8857					-0.024523711250594715
DKWRHHRRLLT	11	Unmodified	_DKWRHHRRLLT_					0	0	0		ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7035217285156	3	506.623525	1516.84875	-0.036815	-1.8651E-05	-2.2208	-0.0011251	-2.2576	-0.0011437	506.6224686644591	32.49	0.41091	32.253	32.086	32.497	-0.23666					15	9	2	0	0	0	0.024865	1	2249	2249		2.688	0	1	163710			7323	9558	4704	4722	8858	8858					0.11099650991059207
DKWRSETWTSY	11	Unmodified	_DKWRSETWTSY_					0	0	0			REV__ENST00000469159.1_1_1:160326803-160328058:+|nuORF	REV__ENST00000469159.1_1_1:160326803-160328058:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.24603271484375	3	486.893124	1457.65754	2.094	0.0010195	-1.1772	-0.00057316	0.9168	0.00044638	486.8922586103548	23.823	0.26307	23.632	23.442	23.705	-0.19117					6	5	2	0	0	0	0.024865	1	954	954		17.167	2.4731	1	18574	+		7324	25483	4705	4723	8859	8859					-0.05297939621391379
DKYADFIEA	9	Unmodified	_DKYADFIEA_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000486374.5_1_10:24873343-24884978:-|nuORF;ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENST00000401578.2_1_6:80775088-80776231:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.328125	2	536.253297	1070.49204	-1.2885	-0.00069095	-2.0391	-0.0010935	-3.3276	-0.0017844	536.2523550381717	43.687	1.068	43.542	43.094	44.162	-0.14471					48	29	2	0	0	0	0.024319	1	4132	4132		39.253	0	1	272650			7325	2865;13672	4706	4724	8860	8860					-0.04038546410265553
DKYFKEWHK	9	Unmodified	_DKYFKEWHK_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	640.2943725585938	2	640.824755	1279.63496	-1.316	-0.00084335	-3.2813	-0.0021027	-4.5973	-0.0029461	641.3239768243897	65.53	0.32789	65.317	65.135	65.463	-0.21327					13	7	2	0	0	0	0.024495	1	7508	7508		9.1829	0	1	148280			7326	2538	4707	4725	8861	8861					0.006325057716367155
DKYGIRIRVK	10	Unmodified	_DKYGIRIRVK_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.7220153808594	3	416.59094	1246.75099	0.035381	1.4739E-05	0.31806	0.0001325	0.35344	0.00014724	416.59100798504113	42.062	0.43149	42.088	41.857	42.289	0.026012					24	12	3	0	0	0	0.03519	1	3810	3810		1.6353	0	1	229750			7327	10237	4708	4726	8862	8862					0.13748449342347158
DKYGIRIRVK	10	Unmodified	_DKYGIRIRVK_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	416.59094	1246.75099	0.7631	0.0003179	-0.11613	-4.838E-05	0.64697	0.00026952	416.5906005516489	41.95	0.36422	41.95	41.722	42.087	0	-0.04832	-0.00048528	NaN	0.40526	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173820			7328	10237	4708	4726							0.13748449342347158
DKYGIRIRVK	10	Unmodified	_DKYGIRIRVK_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	416.59094	1246.75099	0.0556	2.3162E-05	0.36459	0.00015188	0.42019	0.00017505	416.59089932206354	42.089	0.35795	41.957	41.825	42.183	-0.13219	-0.041675	0.00011551	NaN	0.40526	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203890			7329	10237	4708	4726							0.13748449342347158
DKYGLQCR	8	Unmodified	_DKYGLQCR_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.75579833984375	2	491.742376	981.4702	-0.24127	-0.00011864	-0.07198	-3.5396E-05	-0.31325	-0.00015404	491.74194027234415	43.798	0.32402	43.829	43.629	43.953	0.030827					11	8	2	0	0	0	0.027866	1	4048	4048		21.96	0	1	108340	+		7330	21252	4709	4727	8863	8863					-0.021276296398013983
DKYLAKQV	8	Unmodified	_DKYLAKQV_					0	0	0			REV__ENSG00000204611|ENST00000600228|ZNF616	REV__ENSG00000204611|ENST00000600228|ZNF616	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.6463317871094	2	482.776742	963.538931	-0.091885	-4.436E-05	-0.53493	-0.00025825	-0.62682	-0.00030261	482.7762909190209	47.628	0.37059	47.359	47.163	47.534	-0.26939					16	9	2	0	0	0	0.027866	1	4627	4627		12.207	0	1	196120	+		7331	28624	4711	4728	8864	8864					0.05570357931549097
DKYLAKQV	8	Unmodified	_DKYLAKQV_					0	0	0			REV__ENSG00000204611|ENST00000600228|ZNF616	REV__ENSG00000204611|ENST00000600228|ZNF616	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	482.776742	963.538931	0.12397	5.9852E-05	-0.97088	-0.00046872	-0.8469	-0.00040886	482.7760323099057	47.42	0.36848	47.323	47.083	47.452	-0.096653	-0.018063	-0.00028022	NaN	7.1934	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211550	+		7332	28624	4711	4728							0.05570357931549097
DKYLLAMVL	9	Unmodified	_DKYLLAMVL_					0	0	0		ENSG00000204710|ENST00000377185|SPDYC;chr11:65172001-65172246|145|15.74|0.43|5.19|+|0|SPDYC,SPDYC|1	ENSG00000204710|ENST00000377185|SPDYC	ENSG00000204710|ENST00000377185|SPDYC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3214111328125	2	533.304278	1064.594	-1.2674	-0.00067589	4.2984	0.0022924	3.0311	0.0016165	533.3064575838009	30.019	0.71607	29.84	29.527	30.243	-0.17817					42	16	4	0	0	0	0.024539	1	1896	1896		20.947	0	1	951320			7333	10373	4712	4729	8865	8865					0.06429028407819715
DKYLVTEPIS	10	Unmodified	_DKYLVTEPIS_					0	0	0			REV__ENSG00000276747|ENST00000619609|PADI6	REV__ENSG00000276747|ENST00000619609|PADI6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.3373413085938	2	582.810979	1163.6074	-1.2786	-0.00074516	2.913	0.0016977	1.6344	0.00095257	583.3120261891613	54.079	0.23767	54.079	53.872	54.109	0					9	6	2	0	0	0	0.03519	1	5879	5879		24.519	0	1	88041	+		7334	29201	4713	4730	8866	8866					0.03214557720752964
DKYNLKKF	8	Unmodified	_DKYNLKKF_					0	0	0			REV__ENSG00000043462|ENST00000046794|LCP2	REV__ENSG00000043462|ENST00000046794|LCP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7484130859375	2	528.297842	1054.58113	0.28937	0.00015287	-2.0825	-0.0011002	-1.7931	-0.0009473	528.2970739201237	84.752	0.50513	84.549	84.294	84.8	-0.20329					23	11	3	0	0	0	0.027866	1	10274	10274		27.882	3.6795	1	55945	+		7335	20107	4714	4731	8867	8867					0.056023333399252806
DKYQFGKT	8	Unmodified	_DKYQFGKT_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.77947998046875	2	493.750724	985.486896	-0.13929	-6.8775E-05	2.2792	0.0011254	2.14	0.0010566	493.7519460110546	50.05	0.50563	50.131	49.737	50.243	0.08099					18	14	2	0	0	0	0.027866	1	5101	5101		21.96	1.013	1	420310			7336	10013	4715	4732	8868	8868					-0.006428054821981277
DKYQQTRKT	9	Unmodified	_DKYQQTRKT_					0	0	0		ENST00000470325.1_1_17:15231272-15234902:-|nuORF;ENSG00000125409|ENST00000395930|TEKT3	ENST00000470325.1_1_17:15231272-15234902:-|nuORF	ENST00000470325.1_1_17:15231272-15234902:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	584.330078125	2	584.309469	1166.60439	-1.3848	-0.00080915	-1.9062	-0.0011138	-3.291	-0.001923	584.3080823865296	60.267	0.52803	60.067	59.795	60.323	-0.20016					21	13	2	0	0	0	0.024319	1	6866	6866		24.519	0	1	135840			7337	4103	4716	4733	8869	8869					0.02774727386622544
DKYVFITGCDS	11	Unmodified	_DKYVFITGCDS_					0	0	0		ENSG00000139547|ENST00000398138|RDH16;ENSG00000025423|ENST00000322165|HSD17B6	ENSG00000139547|ENST00000398138|RDH16	ENSG00000139547|ENST00000398138|RDH16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.83917236328125	3	416.525273	1246.55399	-0.60029	-0.00025003	3.5175	0.0014651	2.9172	0.0012151	416.5267349043096	29.458	1.6129	29.286	27.963	29.575	-0.17258					60	37	3	0	0	0	0.024734	1	1656	1656		11.932	0	1	124710			7338	986	4717	4734	8870	8870					-0.05942563053417871
DKYVGLAI	8	Unmodified	_DKYVGLAI_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.7530517578125	2	439.752736	877.490919	-0.031776	-1.3974E-05	0.39941	0.00017564	0.36763	0.00016167	439.7527511396081	23.477	1.0878	23.275	23.014	24.102	-0.20193					67	24	4	0	0	0	0.68535	1	949	949		68.485	0	1	1362200			7339	37917	4718	4735	8871	8871					0.04727284011505617
DKYVGLAI	8	Unmodified	_DKYVGLAI_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.7527770996094	2	439.752736	877.490919	2.2082	0.00097105	-1.9228	-0.00084557	0.28534	0.00012548	439.7517476827268	23.455	1.0731	23.264	22.988	24.061	-0.19117					63	24	4	0	0	0	0.81662	1	906	906		57.811	0	1	2578900			7340	37917	4718	4735	8872	8872					0.04727284011505617
DKYYPLES	8	Unmodified	_DKYYPLES_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7643127441406	2	507.742565	1013.47058	-0.29778	-0.0001512	-2.5501	-0.0012948	-2.8479	-0.001446	507.74101845849145	49.303	1.0962	49.203	48.841	49.938	-0.1008					75	28	5	0	0	0	0.027866	1	4957	4957		30.504	0	1	2318000			7341	6090	4719	4736	8873	8873					-0.03561931438946431
DLAARNCL	8	Unmodified	_DLAARNCL_					0	0	0		ENSG00000113263|ENST00000422843|ITK;ENST00000513777.1_1_5:108513310-108523273:+|nuORF;ENST00000464684.5_1_15:91434747-91438785:+|nuORF;ENST00000519402.5_1_5:156668627-156679685:+|nuORF;ENSG00000074966|ENST00000264316|TXK;ENSG00000102010|ENST00000348343|BMX;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1;nc|ENSG00000010671|Q06187-2|BTK;ENSG00000010671|ENST00000308731|BTK;ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-8|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER;FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant;ENSG00000151422|ENST00000281092|FER;ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENSG00000135605|ENST00000381501|TEC;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	ENSG00000113263|ENST00000422843|ITK;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1;nc|ENSG00000010671|Q06187-2|BTK;ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000151422|P16591-3|FER;ENSG00000097007|ENST00000318560|ABL1;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;ENSG00000135605|ENST00000381501|TEC;nc|ENSG00000182511|P07332-2|FES	ENSG00000047936|ENST00000368507|ROS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.2427673339844	2	438.22382	874.433086	-0.099899	-4.3778E-05	0.30117	0.00013198	0.20127	8.82E-05	438.2238999358766	33.907	0.83116	33.964	33.693	34.524	0.056572					51	20	4	0	0	0	0.027866	1	2442	2442		31.955	0	1	1300900			7342	1112;18045;12;6200;880;2057;3227;9142;3275;4912	4720	4737	8874	8874					-0.009153011855573823
DLAARNVL	8	Unmodified	_DLAARNVL_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;FGFR3-TACC3|13|fusion;FGFR3-TACC3|14|fusion;nc|ENSG00000068078|P22607-2|FGFR3;ENSG00000068078|ENST00000440486|FGFR3;ENSG00000160867|ENST00000292408|FGFR4;nc|ENSG00000068078|P22607-4|FGFR3;nc|ENSG00000160867|P22455-2|FGFR4;FGFR3-TACC3|15|fusion;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000068078|P22607-3|FGFR3;ENST00000529422.1_1_19:10461953-10463789:-|nuORF;ENST00000530220.1_1_19:10461631-10463789:-|nuORF;ENSG00000111816|ENST00000606080|FRK;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ENSG00000103653|ENST00000220003|CSK;nc|ENSG00000111816|P42685-2|FRK;ENST00000380987.2_1_13:28578191-28599431:-|nuORF;ENST00000564216.5_1_15:75092818-75094348:+|nuORF;ENST00000495754.1_1_2:98351695-98354405:+|nuORF;ENST00000473014.1_1_1:43783488-43785201:+|nuORF;ENST00000563010.1_1_15:75093985-75094348:+|nuORF;ENST00000604236.5_1_10:123239373-123278228:-|nuORF;ENSG00000162434|ENST00000342505|JAK1;ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;ENSG00000070886|ENST00000166244|EPHA8;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF;nc|ENSG00000115085|P43403-3|ZAP70;ENSG00000115085|ENST00000264972|ZAP70;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENSG00000122025|ENST00000241453|FLT3;ENSG00000066056|ENST00000372476|TIE1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000105397|ENST00000525621|TYK2;FGFR3-TACC3|3|fusion;FGFR3-TACC3|6|fusion;FGFR3-TACC3|9|fusion;FGFR3-TACC3|2|fusion;FGFR3-TACC3|1|fusion;FGFR3-TACC3|5|fusion;FGFR3-TACC3|4|fusion;FGFR3-TACC3|12|fusion;FGFR3-TACC3|8|fusion;FGFR3-TACC3|7|fusion;FGFR3-TACC3|11|fusion;FGFR3-TACC3|10|fusion	ENSG00000146648|ENST00000275493|EGFR;ENSG00000162434|ENST00000342505|JAK1;ENSG00000113721|ENST00000261799|PDGFRB;ENSG00000070886|ENST00000166244|EPHA8;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000115085|P43403-2|ZAP70;nc|ENSG00000165025|P43405-2|SYK;nc|ENSG00000066468|P21802-17|FGFR2;ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000178568|Q15303-4|ERBB4;ENSG00000122025|ENST00000241453|FLT3;ENSG00000066056|ENST00000372476|TIE1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000105397|ENST00000525621|TYK2;FGFR3-TACC3|3|fusion	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.2535095214844	2	436.253434	870.492316	0.11852	5.1705E-05	-0.34784	-0.00015175	-0.22932	-0.00010004	436.25320949386645	50.3	1.5134	50.195	49.894	51.407	-0.10558					76	39	4	0	0	0	0.27053	4	5098	5088;5098;5110;5123		124.59	0	1	9693000			7343	3322;5898;5518;6943;18087;7356;18086;1439;4114;18065;2669;8819;3907;1330;4836;3407;17651	4721	4738	8875;8876;8877;8878	8876					0.051889181002820806
DLAARNVL	8	Unmodified	_DLAARNVL_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;FGFR3-TACC3|13|fusion;FGFR3-TACC3|14|fusion;nc|ENSG00000068078|P22607-2|FGFR3;ENSG00000068078|ENST00000440486|FGFR3;ENSG00000160867|ENST00000292408|FGFR4;nc|ENSG00000068078|P22607-4|FGFR3;nc|ENSG00000160867|P22455-2|FGFR4;FGFR3-TACC3|15|fusion;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000068078|P22607-3|FGFR3;ENST00000529422.1_1_19:10461953-10463789:-|nuORF;ENST00000530220.1_1_19:10461631-10463789:-|nuORF;ENSG00000111816|ENST00000606080|FRK;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ENSG00000103653|ENST00000220003|CSK;nc|ENSG00000111816|P42685-2|FRK;ENST00000380987.2_1_13:28578191-28599431:-|nuORF;ENST00000564216.5_1_15:75092818-75094348:+|nuORF;ENST00000495754.1_1_2:98351695-98354405:+|nuORF;ENST00000473014.1_1_1:43783488-43785201:+|nuORF;ENST00000563010.1_1_15:75093985-75094348:+|nuORF;ENST00000604236.5_1_10:123239373-123278228:-|nuORF;ENSG00000162434|ENST00000342505|JAK1;ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;ENSG00000070886|ENST00000166244|EPHA8;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF;nc|ENSG00000115085|P43403-3|ZAP70;ENSG00000115085|ENST00000264972|ZAP70;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENSG00000122025|ENST00000241453|FLT3;ENSG00000066056|ENST00000372476|TIE1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000105397|ENST00000525621|TYK2;FGFR3-TACC3|3|fusion;FGFR3-TACC3|6|fusion;FGFR3-TACC3|9|fusion;FGFR3-TACC3|2|fusion;FGFR3-TACC3|1|fusion;FGFR3-TACC3|5|fusion;FGFR3-TACC3|4|fusion;FGFR3-TACC3|12|fusion;FGFR3-TACC3|8|fusion;FGFR3-TACC3|7|fusion;FGFR3-TACC3|11|fusion;FGFR3-TACC3|10|fusion	ENSG00000146648|ENST00000275493|EGFR;ENSG00000162434|ENST00000342505|JAK1;ENSG00000113721|ENST00000261799|PDGFRB;ENSG00000070886|ENST00000166244|EPHA8;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000115085|P43403-2|ZAP70;nc|ENSG00000165025|P43405-2|SYK;nc|ENSG00000066468|P21802-17|FGFR2;ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000178568|Q15303-4|ERBB4;ENSG00000122025|ENST00000241453|FLT3;ENSG00000066056|ENST00000372476|TIE1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000105397|ENST00000525621|TYK2;FGFR3-TACC3|3|fusion	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.2535095214844	2	436.253434	870.492316	0.19727	8.6058E-05	-0.47302	-0.00020635	-0.27575	-0.0001203	436.25312688729593	50.557	1.436	50.277	49.953	51.389	-0.27977					74	37	4	0	0	0	0.24001	4	5122	5112;5122;5133;5146		133.81	0	1	10422000			7344	3322;5898;5518;6943;18087;7356;18086;1439;4114;18065;2669;8819;3907;1330;4836;3407;17651	4721	4738	8879;8880;8881;8882	8880					0.051889181002820806
DLAARNVL	8	Unmodified	_DLAARNVL_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;FGFR3-TACC3|13|fusion;FGFR3-TACC3|14|fusion;nc|ENSG00000068078|P22607-2|FGFR3;ENSG00000068078|ENST00000440486|FGFR3;ENSG00000160867|ENST00000292408|FGFR4;nc|ENSG00000068078|P22607-4|FGFR3;nc|ENSG00000160867|P22455-2|FGFR4;FGFR3-TACC3|15|fusion;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000068078|P22607-3|FGFR3;ENST00000529422.1_1_19:10461953-10463789:-|nuORF;ENST00000530220.1_1_19:10461631-10463789:-|nuORF;ENSG00000111816|ENST00000606080|FRK;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ENSG00000103653|ENST00000220003|CSK;nc|ENSG00000111816|P42685-2|FRK;ENST00000380987.2_1_13:28578191-28599431:-|nuORF;ENST00000564216.5_1_15:75092818-75094348:+|nuORF;ENST00000495754.1_1_2:98351695-98354405:+|nuORF;ENST00000473014.1_1_1:43783488-43785201:+|nuORF;ENST00000563010.1_1_15:75093985-75094348:+|nuORF;ENST00000604236.5_1_10:123239373-123278228:-|nuORF;ENSG00000162434|ENST00000342505|JAK1;ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;ENSG00000070886|ENST00000166244|EPHA8;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF;nc|ENSG00000115085|P43403-3|ZAP70;ENSG00000115085|ENST00000264972|ZAP70;nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENSG00000122025|ENST00000241453|FLT3;ENSG00000066056|ENST00000372476|TIE1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000105397|ENST00000525621|TYK2;FGFR3-TACC3|3|fusion;FGFR3-TACC3|6|fusion;FGFR3-TACC3|9|fusion;FGFR3-TACC3|2|fusion;FGFR3-TACC3|1|fusion;FGFR3-TACC3|5|fusion;FGFR3-TACC3|4|fusion;FGFR3-TACC3|12|fusion;FGFR3-TACC3|8|fusion;FGFR3-TACC3|7|fusion;FGFR3-TACC3|11|fusion;FGFR3-TACC3|10|fusion	ENSG00000146648|ENST00000275493|EGFR;ENSG00000162434|ENST00000342505|JAK1;ENSG00000113721|ENST00000261799|PDGFRB;ENSG00000070886|ENST00000166244|EPHA8;ENSG00000125508|ENST00000217188|SRMS;nc|ENSG00000115085|P43403-2|ZAP70;nc|ENSG00000165025|P43405-2|SYK;nc|ENSG00000066468|P21802-17|FGFR2;ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000178568|Q15303-4|ERBB4;ENSG00000122025|ENST00000241453|FLT3;ENSG00000066056|ENST00000372476|TIE1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;ENSG00000105397|ENST00000525621|TYK2;FGFR3-TACC3|3|fusion	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.25372314453125	2	436.253434	870.492316	0.71914	0.00031373	-0.99134	-0.00043247	-0.27219	-0.00011875	436.25287112209537	50.409	1.5894	50.229	49.788	51.378	-0.18071					78	41	4	0	0	0	0.27053	3	5109	5099;5109;5121		124.59	0	1	9562200			7345	3322;5898;5518;6943;18087;7356;18086;1439;4114;18065;2669;8819;3907;1330;4836;3407;17651	4721	4738	8883;8884;8885	8884					0.051889181002820806
DLAASVSLT	9	Unmodified	_DLAASVSLT_					0	0	0		ENST00000376139.6_2_10:27149770-27149884:-|nuORF	ENST00000376139.6_2_10:27149770-27149884:-|nuORF	ENST00000376139.6_2_10:27149770-27149884:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.1993103027344	2	438.737283	875.460012	0.3754	0.0001647	-0.52108	-0.00022862	-0.14568	-6.3916E-05	438.73699876450485	62.02	0.5131	61.763	61.505	62.018	-0.25725					19	12	2	0	0	0	0.024323	1	6927	6927		27.882	12.24	1	247990			7346	13175	4722	4739	8886	8886					0.01730085906626755
DLAEAVTVPS	10	Unmodified	_DLAEAVTVPS_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	501.261122	1000.50769	1.2446	0.00062386	-1.0912	-0.00054696	0.15341	7.6899E-05	501.2603891286676	59.65	0.80926	59.65	59.295	60.104	0					45	21	3	0	0	0	0.03519	1	6843	6843		32.812	0	1	863710	+		7347	22049	4723	4740	8887	8887					0.00745740106822268
DLAEPFRGP	9	Unmodified	_DLAEPFRGP_					0	0	0			REV__ENSG00000156381|ENST00000286918|ANKRD9	REV__ENSG00000156381|ENST00000286918|ANKRD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.29547119140625	2	501.256174	1000.49779	-0.54713	-0.00027425	-3.0268	-0.0015172	-3.5739	-0.0017915	501.25454332465915	26.245	0.36979	26.221	25.954	26.324	-0.023088					12	8	2	0	0	0	0.024541	1	1304	1304		19.997	0.6368	1	80663	+		7348	25071	4724	4741	8888	8888					-0.0024340310790194053
DLAEPFRGP	9	Unmodified	_DLAEPFRGP_					0	0	0			REV__ENSG00000156381|ENST00000286918|ANKRD9	REV__ENSG00000156381|ENST00000286918|ANKRD9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.256174	1000.49779	-1.0474	-0.000525	-0.5732	-0.00028732	-1.6206	-0.00081232	501.2556827043042	26.58	0.35863	26.416	26.307	26.666	-0.16331	0.12424	0.0025124	NaN	60.972	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38587	+		7349	25071	4724	4741							-0.0024340310790194053
DLAEQNRRDA	10	Unmodified	_DLAEQNRRDA_					0	0	0		CON__Q148H6	CON__Q148H6	CON__Q148H6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.3058471679688	2	594.291808	1186.56906	-0.75767	-0.00045027	-1.9771	-0.001175	-2.7348	-0.0016252	594.2903928152631	63.674	0.61522	63.482	63.224	63.84	-0.19243					39	15	3	0	0	0	0.03519	1	7171	7171		22.58	0	1	573560		+	7350	539	4725	4742	8889	8889					-0.016759351411792522
DLAERAARPA	10	Unmodified	_DLAERAARPA_					0	0	0			REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.260986328125	2	535.291079	1068.56761	-0.35533	-0.0001902	-0.52679	-0.00028199	-0.88212	-0.00047219	535.2907408346438	24.442	0.28769	24.227	24.089	24.377	-0.2151					9	6	2	0	0	0	0.03519	1	1090	1090		28.081	0	1	102400	+		7351	37018	4726	4743	8890	8890					0.03606475560695799
DLAGLDLTN	9	Unmodified	_DLAGLDLTN_					0	0	0		ENSG00000184378|ENST00000330368|ACTRT3	ENSG00000184378|ENST00000330368|ACTRT3	ENSG00000184378|ENST00000330368|ACTRT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.26629638671875	2	466.24019	930.465826	0.73606	0.00034318	-0.39862	-0.00018585	0.33744	0.00015733	466.23992997351195	65.516	0.76323	65.553	65.288	66.051	0.037376					45	20	3	0	0	0	0.024209	1	7736	7736		39.253	5.0803	1	1579800			7352	9332	4727	4744	8891	8891					-0.0021881558171799043
DLAGRYYAL	9	Unmodified	_DLAGRYYAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2730102539062	2	521.271824	1040.5291	-0.30818	-0.00016064	-0.73824	-0.00038482	-1.0464	-0.00054547	521.2716133256062	61.527	1.1676	61.313	61.001	62.168	-0.21375					78	28	5	0	0	0	0.31037	3	6881	6870;6881;6893		74.255	12.872	1	8295500			7353	7514	4728	4745	8892;8893;8894	8893					0.010451699261693648
DLAGRYYAL	9	Unmodified	_DLAGRYYAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2737426757812	2	521.271824	1040.5291	-0.60359	-0.00031464	-0.1899	-9.8988E-05	-0.79349	-0.00041362	521.271786395833	61.406	1.1662	61.23	60.914	62.08	-0.1761					77	28	5	0	0	0	0.31037	3	6860	6860;6868;6886		74.255	17.534	1	7279200			7354	7514	4728	4745	8895;8896;8897	8895					0.010451699261693648
DLAGRYYAL	9	Unmodified	_DLAGRYYAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2754516601562	2	521.271824	1040.5291	-0.20306	-0.00010585	-0.79714	-0.00041553	-1.0002	-0.00052138	521.2714620792403	61.608	1.1659	61.351	61.008	62.174	-0.25725					78	28	5	0	0	0	0.23085	3	6893	6881;6893;6901		84.916	22.92	1	7201600			7355	7514	4728	4745	8898;8899;8900	8899					0.010451699261693648
DLAIPLLGIY	10	Unmodified	_DLAIPLLGIY_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|84|2|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|84|2|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|84|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3184814453125	2	544.323525	1086.6325	-0.92347	-0.00050267	1.2548	0.00068301	0.33131	0.00018034	544.3239745854091	81.697	0.24145	81.697	81.589	81.83	0					8	5	2	0	0	0	0.03519	1	10179	10179		45.952	19.259	1	323450			7356	17901	4729	4746	8901	8901					0.09264657314020042
DLAIPSHLGL	10	Unmodified	_DLAIPSHLGL_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.779541015625	2	518.295299	1034.57605	-0.72469	-0.0003756	-2.3189	-0.0012019	-3.0436	-0.0015775	518.293892008597	51.578	0.17417	51.43	51.336	51.511	-0.14735					6	4	2	0	0	0	0.03519	1	5456	5456		14.865	0	1	60336	+		7357	20462	4730	4747	8902	8902					0.060140294773418645
DLAKKEAL	8	Unmodified	_DLAKKEAL_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1;ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.26336669921875	2	444.263468	886.512382	-0.6595	-0.00029299	0.77809	0.00034568	0.11859	5.2685E-05	444.2637394168643	29.464	0.8924	29.291	28.937	29.829	-0.17258					48	20	5	0	0	0	0.53593	1	1795	1795		82.241	2.5279	1	1367200			7358	6366	4731	4748	8903	8903					0.06458669040239329
DLALAAPRPS	10	Unmodified	_DLALAAPRPS_					0	0	0		ENST00000239944.6_1_3:150264054-150264312:-|nuORF	ENST00000239944.6_1_3:150264054-150264312:-|nuORF	ENST00000239944.6_1_3:150264054-150264312:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3230895996094	2	505.785099	1009.55564	-1.1917	-0.00060277	-2.5399	-0.0012847	-3.7317	-0.0018874	505.78363786944783	79.998	1.0079	79.838	79.369	80.376	-0.16017					48	23	3	0	0	0	0.03519	1	9855	9855		35.152	0	1	902750			7359	11278	4732	4749	8904	8904					0.05124858817521272
DLALFPEPQ	9	Unmodified	_DLALFPEPQ_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3233642578125	2	515.266207	1028.51786	-0.92534	-0.0004768	4.4027	0.0022686	3.4773	0.0017918	515.2683402309606	73.89	0.76183	73.9	73.677	74.439	0.0096512					39	17	3	0	0	0	0.024209	1	8953	8953		56.721	0	1	2330300			7360	4913	4733	4750	8905	8905					0.004743478320278882
DLALGRPNTL	10	Unmodified	_DLALGRPNTL_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8472900390625	2	535.303655	1068.59276	-0.50104	-0.00026821	0.56977	0.000305	0.068732	3.6793E-05	535.303657101498	47.111	0.69907	47.111	46.696	47.395	0					25	18	2	0	0	0	0.03519	1	4733	4733		23.523	0	1	171660	+		7361	20681	4734	4751	8906	8906					0.061205303632732466
DLALGRPNTL	10	Unmodified	_DLALGRPNTL_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.303655	1068.59276	0.086266	4.6179E-05	-0.36295	-0.00019429	-0.27668	-0.00014811	535.3032003080456	47.259	0.4375	47.106	46.899	47.336	-0.15301	0.0081658	-0.00096377	NaN	51.193	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246610	+		7362	20681	4734	4751							0.061205303632732466
DLALGRPNTL	10	Unmodified	_DLALGRPNTL_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.303655	1068.59276	-1.0555	-0.00056501	0.97203	0.00052033	-0.083473	-4.4683E-05	535.3040740497654	47.018	0.48158	47.077	46.766	47.247	0.059093	-0.021077	0.00046546	NaN	51.193	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233700	+		7363	20681	4734	4751							0.061205303632732466
DLALHVRW	8	Unmodified	_DLALHVRW_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32379150390625	2	505.282526	1008.5505	-0.081918	-4.1392E-05	-0.42784	-0.00021618	-0.50976	-0.00025757	505.28203017864337	78.779	0.46147	78.798	78.567	79.028	0.018677					16	10	2	0	0	0	0.027866	1	9712	9712		79.939	5.9645	1	104710	+		7364	29083	4735	4752	8907	8907					0.046565997455672914
DLALHVRW	8	Unmodified	_DLALHVRW_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.32373046875	2	505.282526	1008.5505	0.2831	0.00014304	0.14312	7.2317E-05	0.42622	0.00021536	505.28320033276947	78.959	0.59148	78.704	78.471	79.062	-0.25471					23	13	3	0	0	0	0.027866	1	9457	9457		79.939	8.6435	1	101480	+		7365	29083	4735	4752	8908	8908					0.046565997455672914
DLALKVNLL	9	Unmodified	_DLALKVNLL_					0	0	0			REV__nc|ENSG00000131095|P14136-2|GFAP;REV__nc|ENSG00000131095|P14136-3|GFAP	REV__nc|ENSG00000131095|P14136-2|GFAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	499.815867	997.617182	1.3893	0.0006944	-2.3842	-0.0011917	-0.9949	-0.00049727	499.8149138234469	59.818	0.321	59.818	59.559	59.88	0					12	8	2	0	0	0	0.024319	1	6843	6843		31.53	0	1	236860	+		7366	36655;36656	4736	4753	8909	8909					0.11827790516804271
DLAQRRGNI	9	Unmodified	_DLAQRRGNI_					0	0	0		nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2;nc|ENSG00000164347|Q969S9-2|GFM2	nc|ENSG00000164347|Q969S9-3|GFM2	nc|ENSG00000164347|Q969S9-3|GFM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3053588867188	2	521.791247	1041.56794	-0.90641	-0.00047296	3.2783	0.0017106	2.3719	0.0012376	521.7925677209581	47.269	0.20961	47.328	47.179	47.389	0.059093					9	5	2	0	0	0	0.024447	1	4654	4654		49.442	7.0454	1	227380			7367	7268	4737	4754	8910	8910					0.0488189528057319
DLAVLTII	8	Unmodified	_DLAVLTII_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.8707275390625	2	429.270761	856.52697	1.5345	0.00065873	1.4654	0.00062907	3	0.0012878	429.2712258400373	36.794	0.43931	36.584	36.405	36.844	-0.2092					16	10	2	0	0	0	0.027866	1	2907	2907		17.365	5.1581	1	85865	+		7368	23259	4738	4755	8911	8911					0.09296741188370561
DLAYHMHSPE	10	Unmodified	_DLAYHMHSPE_					0	0	0			REV__nc|ENSG00000054983|P54803-5|GALC	REV__nc|ENSG00000054983|P54803-5|GALC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.8948059082031	3	400.509846	1198.50771	0.13478	5.3983E-05	-0.46182	-0.00018496	-0.32704	-0.00013098	400.5094601264483	26.448	0.49042	26.425	26.203	26.694	-0.023088					17	11	2	0	0	0	0.03519	1	1354	1354		31.634	12.372	1	44404	+		7369	20197	4739	4756	8912	8912					-0.08360583164858326
DLCHIRDGS	9	Unmodified	_DLCHIRDGS_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.801025390625	2	508.234916	1014.45528	0.40436	0.00020551	0.9358	0.00047561	1.3402	0.00068112	508.7377893008989	37.071	0.23794	36.862	36.685	36.923	-0.2092					10	5	3	0	0	0	0.024418	1	2911	2911		37.812	4.2959	1	174150	+		7370	24322;28233	4740	4757	8913	8913					-0.0513712150777792
DLCIFKVQP	9	Unmodified	_DLCIFKVQP_					0	0	0			REV__ENSG00000137198|ENST00000259727|GMPR	REV__ENSG00000137198|ENST00000259727|GMPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7860107421875	2	531.786253	1061.55795	-0.36674	-0.00019503	3.9902	0.0021219	3.6235	0.0019269	531.7882538718965	46.296	0.6214	46.347	46.063	46.685	0.051395					30	17	2	0	0	0	0.023239	1	4475	4475		54.776	0	1	1138000	+		7371	23734	4741	4758	8914	8914					0.029635712309755036
DLCLAKQLRR	10	Unmodified	_DLCLAKQLRR_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD;REV__nc|ENSG00000152818|P46939-3|UTRN	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.7349548339844	3	405.90453	1214.69176	0.80488	0.0003267	-0.61834	-0.00025099	0.18654	7.5717E-05	405.9044290171174	22.173	0.79659	21.984	21.531	22.327	-0.18894					43	16	4	0	0	0	0.03519	1	790	790		3.4087	0	1	250560	+		7372	28526;24867;36792	4742	4759	8915	8915					0.09300230056510372
DLCQLPLGL	9	Unmodified	_DLCQLPLGL_					0	0	0		ENST00000519481.5_1_8:128903106-129001428:+|nuORF;ENST00000521951.1_1_8:128903100-128951828:+|nuORF	ENST00000519481.5_1_8:128903106-129001428:+|nuORF	ENST00000519481.5_1_8:128903106-129001428:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.81268310546875	2	486.265153	970.515753	-0.27025	-0.00013141	3.303	0.0016061	3.0328	0.0014747	486.2672465087245	89.558	0.33658	89.574	89.257	89.594	0.015907					10	7	2	0	0	0	0.024263	1	11188	11188		51.335	0	1	381140			7373	15953	4743	4760	8916	8916					0.0293159582259932
DLCVSPYFF	9	Unmodified	_DLCVSPYFF_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3245849609375	2	545.749336	1089.48412	-0.58151	-0.00031736	-2.8252	-0.0015418	-3.4067	-0.0018592	545.7477341992152	67.948	1.1459	67.66	67.03	68.176	-0.28834					46	28	2	0	0	0	0.024436	1	8159	8159		30.504	5.0535	1	1499300	+		7374	37178	4744	4761	8917	8917					-0.057043969313554044
DLDDLEREI	9	Unmodified	_DLDDLEREI_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2706298828125	2	559.272218	1116.52988	-0.79523	-0.00044475	-1.8767	-0.0010496	-2.672	-0.0014944	559.2710293803535	62.7	1.2902	62.7	62.446	63.736	0					71	33	3	0	0	0	0.17822	2	7298	7298;7320		93.195	18.152	1	3075000			7375	8242	4745	4762	8918;8919	8918					-0.023720802154457488
DLDDLEREI	9	Unmodified	_DLDDLEREI_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2708740234375	2	559.272218	1116.52988	-1.0094	-0.00056451	-1.4872	-0.00083172	-2.4965	-0.0013962	559.2712230839832	62.925	1.4316	62.686	62.419	63.85	-0.23926					66	37	3	0	0	0	0.23085	2	7303	7303;7329		84.916	7.6702	1	3429600			7376	8242	4745	4762	8920;8921	8920					-0.023720802154457488
DLDDLEREI	9	Unmodified	_DLDDLEREI_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2698364257812	2	559.272218	1116.52988	0.16407	9.1757E-05	-2.8674	-0.0016036	-2.7033	-0.0015119	559.2704498208099	62.674	2.0612	62.737	62.442	64.504	0.062767					93	54	3	0	0	0	0.15366	2	7226	7226;7239		98.629	5.6736	1	2967600			7377	8242	4745	4762	8922;8923	8922					-0.023720802154457488
DLDDLEREI	9	Unmodified	_DLDDLEREI_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	559.272218	1116.52988	-0.1025	-5.7325E-05	-1.8803	-0.0010516	-1.9828	-0.0011089	559.271066399737	62.922	0.97211	62.701	62.547	63.519	-0.22097	0.0059415	0.0003184	NaN	98.629	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	652950			7378	8242	4745	4762							-0.023720802154457488
DLDDLEREI	9	Unmodified	_DLDDLEREI_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.272218	1116.52988	-0.42546	-0.00023795	-2.7428	-0.001534	-3.1682	-0.0017719	559.2706295989276	62.835	0.85334	62.651	62.573	63.426	-0.18386	-0.043971	-0.00064631	NaN	98.629	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528180			7379	8242	4745	4762							-0.023720802154457488
DLDETSDPAL	10	Unmodified	_DLDETSDPAL_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140;ENST00000565298.5_1_16:1560947-1574065:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2948608398438	2	538.243126	1074.4717	-1.4051	-0.00075626	-4.0108	-0.0021588	-5.4159	-0.0029151	538.240521470729	55.825	0.72733	55.923	55.819	56.546	0.097897					31	19	2	0	0	0	0.03519	1	6140	6140		40.778	0	1	298250			7380	9632	4746	4763	8924	8924					-0.06255761860711573
DLDEVKQIY	9	Unmodified	_DLDEVKQIY_					0	0	0		ENST00000592408.5_1_17:42964113-42971889:-|nuORF;ENST00000590105.1_1_17:42971565-42971889:-|nuORF	ENST00000592408.5_1_17:42964113-42971889:-|nuORF	ENST00000592408.5_1_17:42964113-42971889:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.7874145507812	2	561.787504	1121.56045	0.45319	0.00025459	-0.21252	-0.00011939	0.24066	0.0001352	561.7871367281253	59.263	0.60478	59.082	58.791	59.395	-0.18134					40	14	4	0	0	0	0.62163	1	6554	6554		51.335	1.8939	1	1025000			7381	17321	4747	4764	8925	8925					0.004536981696446674
DLDEVKQIY	9	Unmodified	_DLDEVKQIY_					0	0	0		ENST00000592408.5_1_17:42964113-42971889:-|nuORF;ENST00000590105.1_1_17:42971565-42971889:-|nuORF	ENST00000592408.5_1_17:42964113-42971889:-|nuORF	ENST00000592408.5_1_17:42964113-42971889:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	561.787504	1121.56045	0.13541	7.6073E-05	-0.20484	-0.00011508	-0.069428	-3.9004E-05	561.7873487770627	59.308	0.65063	59.12	58.819	59.469	-0.18795	0.01908	4.2789E-06	NaN	51.335	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1029400			7382	17321	4747	4764							0.004536981696446674
DLDEWKGR	8	Unmodified	_DLDEWKGR_					0	0	0			REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7493896484375	2	509.751256	1017.48796	-1.1776	-0.00060026	-2.2275	-0.0011355	-3.405	-0.0017357	509.7500686546672	29.783	0.73362	29.862	29.607	30.341	0.078344					43	17	4	0	0	0	0.6536	1	1805	1805		71.296	13.484	1	1701500	+		7383	20240	4748	4765	8926	8926					-0.020085911132809997
DLDEWKGR	8	Unmodified	_DLDEWKGR_					0	0	0			REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	509.751256	1017.48796	-1.4361	-0.00073206	-1.7597	-0.00089701	-3.1958	-0.0016291	509.7502386520185	30.159	0.7793	30.159	29.855	30.634	0	0.11771	0.00051741	NaN	71.296	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1472400	+		7384	20240	4748	4765							-0.020085911132809997
DLDEWKGR	8	Unmodified	_DLDEWKGR_					0	0	0			REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	REV__ENST00000493262.1_1_7:139741422-139754495:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	509.751256	1017.48796	-0.66017	-0.00033652	-2.6481	-0.0013499	-3.3082	-0.0016864	509.74988788184965	30.095	0.86729	30.104	29.839	30.706	0.0086708	0.062434	-0.00038827	NaN	71.296	58	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525200	+		7385	20240	4748	4765							-0.020085911132809997
DLDGAPTQYL	10	Unmodified	_DLDGAPTQYL_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.7645874023438	2	546.764029	1091.5135	-0.62137	-0.00033974	0.52293	0.00028592	-0.098438	-5.3822E-05	546.7641126564824	67.699	1.1072	67.411	67.069	68.176	-0.28834					77	27	4	0	0	0	0.74632	1	8052	8052		64.207	0.901	1	4039100	+		7386	21909	4749	4766	8927	8927					-0.02859161381525155
DLDGHSDPE	9	Unmodified	_DLDGHSDPE_					0	0	0		nc|ENSG00000141699|Q86VR2-2|RETREG3;ENSG00000141699|ENST00000309428|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2668151855469	2	492.698886	983.383219	-0.84202	-0.00041486	1.1513	0.00056725	0.3093	0.00015239	492.6993344247017	28.794	0.81132	28.794	28.449	29.26	0					41	19	3	0	0	0	0.024263	1	1686	1686		42.396	14.514	1	897580			7387	5517	4750	4767	8928	8928					-0.10913757380512834
DLDGHSDPE	9	Unmodified	_DLDGHSDPE_					0	0	0		nc|ENSG00000141699|Q86VR2-2|RETREG3;ENSG00000141699|ENST00000309428|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	492.698886	983.383219	-0.40455	-0.00019932	0.74486	0.00036699	0.34031	0.00016767	492.6992346031291	28.786	0.86299	28.617	28.254	29.117	-0.16897	-0.0015703	-0.0004232	NaN	42.396	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1003400			7388	5517	4750	4767							-0.10913757380512834
DLDGHSDPE	9	Unmodified	_DLDGHSDPE_					0	0	0		nc|ENSG00000141699|Q86VR2-2|RETREG3;ENSG00000141699|ENST00000309428|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	nc|ENSG00000141699|Q86VR2-2|RETREG3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	492.698886	983.383219	-0.39945	-0.00019681	0.95294	0.00046951	0.55348	0.0002727	492.69932413101554	28.669	0.66713	28.517	28.243	28.91	-0.15195	-0.10068	-0.00021817	NaN	42.396	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	978130			7389	5517	4750	4767							-0.10913757380512834
DLDGNESPLA	10	Unmodified	_DLDGNESPLA_					0	0	0		nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7898559570312	2	515.738011	1029.46147	0.096743	4.9894E-05	0.68307	0.00035229	0.77982	0.00040218	515.7382274596035	41.279	0.89218	41.155	40.87	41.762	-0.12318					42	24	4	0	0	0	0.03519	1	3743	3743		62.107	19.243	1	286040			7390	8325	4751	4768	8929	8929					-0.052083247952623424
DLDGSTPLPN	10	Unmodified	_DLDGSTPLPN_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8394165039062	2	514.748379	1027.4822	-0.72656	-0.000374	-1.3247	-0.00068191	-2.0513	-0.0010559	514.7478509236377	57.344	0.36723	57.176	57.001	57.369	-0.1672					15	9	2	0	0	0	0.03519	1	6251	6251		62.107	1.9892	1	98258	+		7391	23409	4752	4769	8930	8930					-0.030437344156098334
DLDIFGYTHG	10	Unmodified	_DLDIFGYTHG_					0	0	0			REV__ENST00000441115.5_1_3:50012785-50103056:+|nuORF	REV__ENST00000441115.5_1_3:50012785-50103056:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3132934570312	2	569.264196	1136.51384	-0.22401	-0.00012752	2.4381	0.0013879	2.2141	0.0012604	569.2654531001493	96.314	0.50231	96.158	95.794	96.296	-0.15646					15	11	2	0	0	0	0.03519	1	11888	11888		26.693	0	1	66650	+		7392	19780	4753	4770	8931	8931					-0.048957416616758564
DLDIVAVVND	10	Unmodified	_DLDIVAVVND_					0	0	0		nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.707275390625	2	536.779679	1071.5448	-0.81075	-0.00043519	-1.9037	-0.0010219	-2.7144	-0.0014571	536.7787413138212	57.218	0.50707	57.051	56.823	57.33	-0.1672					25	13	2	0	0	0	0.03519	1	6200	6200		51.528	0	1	186670			7393	6537	4754	4771	8932	8932					0.011894116525809295
DLDKYTPF	8	Unmodified	_DLDKYTPF_					0	0	0			REV__nc|ENSG00000186111|O60331-2|PIP5K1C	REV__nc|ENSG00000186111|O60331-2|PIP5K1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.8005676269531	2	499.745108	997.475663	-0.83573	-0.00041765	1.006	0.00050272	0.17022	8.5067E-05	499.7456801863008	28.71	0.92184	28.71	28.151	29.073	0					33	21	3	0	0	0	0.027866	1	1711	1711		42.396	10.441	1	245330	+		7394	37025	4755	4772	8933	8933					-0.02317627576326231
DLDMLIRKNE	10	Unmodified	_DLDMLIRKNE_					0	0	0			REV__ENSG00000076984|ENST00000397979|MAP2K7	REV__ENSG00000076984|ENST00000397979|MAP2K7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.22088623046875	3	416.220184	1245.63872	-0.3815	-0.00015879	1.8465	0.00076854	1.465	0.00060975	416.22074792070606	24.459	2.0792	24.243	23.822	25.901	-0.2151					130	48	4	0	0	0	0.99657	1	1111	1111		46.457	0.54867	1	2424200	+		7395	20577	4756	4773	8934	8934					0.025728074832386483
DLDQLRSIV	9	Unmodified	_DLDQLRSIV_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7955932617188	2	529.795663	1057.57677	-0.44902	-0.00023789	-0.025749	-1.3642E-05	-0.47477	-0.00025153	529.7956054961212	63.282	1.2297	63.031	62.683	63.912	-0.25141					82	32	3	0	0	0	0.19099	1	7350	7350		90.37	10.657	1	11344000			7396	6165	4757	4774	8935	8935					0.05028824126361542
DLDQTKIL	8	Unmodified	_DLDQTKIL_					0	0	0			REV__ENSG00000124003|ENST00000446656|MOGAT1	REV__ENSG00000124003|ENST00000446656|MOGAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.271728515625	2	473.266207	944.517862	-0.76701	-0.000363	1.0022	0.0004743	0.23519	0.00011131	473.2665337173096	65.123	0.5532	64.86	64.686	65.239	-0.2626					37	14	3	0	0	0	0.027866	1	7669	7669		25.45	0	1	1224800	+		7397	22724	4758	4775	8936	8936					0.04338347832049294
DLDRPSHSE	9	Unmodified	_DLDRPSHSE_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7640380859375	2	528.241252	1054.46795	-0.32979	-0.00017421	3.2528	0.0017183	2.923	0.0015441	528.240666563875	62.427	0.23319	62.169	62.017	62.25	-0.25824					8	5	2	0	0	0	0.024457	1	7007	7007		21.96	0	1	60047	+		7398	35717	4759	4776	8937	8937					-0.057103868438844074
DLDSGPALLF	10	Unmodified	_DLDSGPALLF_					0	0	0		nc|nan|A6NN90|C2orf81;ENSG00000284308|ENST00000684111|C2orf81	nc|nan|A6NN90|C2orf81	nc|nan|A6NN90|C2orf81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2967529296875	2	524.27149	1046.52843	-0.25091	-0.00013154	0.90417	0.00047403	0.65326	0.00034249	524.271645700189	103.18	1.0914	103.19	102.89	103.98	0.0054245					48	27	2	0	0	0	0.03519	1	13191	13191		90.777	0	1	245480			7399	11093	4760	4777	8938	8938					0.00702330486478786
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.2877807617188	2	572.287671	1142.56079	-0.22648	-0.00012961	-0.34607	-0.00019805	-0.57255	-0.00032766	572.287465349207	65.469	1.3468	65.227	64.761	66.108	-0.24145					83	32	3	0	0	0	0.10174	6	7465	7453;7465;7477;7489;7501;7517		110.12	42.626	1	16020000			7400	4465	4761	4778	8939;8940;8941;8942;8943;8944	8940					-0.004788821105421448
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2877197265625	2	572.287671	1142.56079	-1.3038	-0.00074616	0.74382	0.00042568	-0.55999	-0.00032048	572.2880914128423	65.449	1.3434	65.236	64.888	66.232	-0.21327					82	32	3	0	0	0	0.1158	5	7468	7456;7468;7480;7492;7504		107.01	46.036	1	17107000			7401	4465	4761	4778	8945;8946;8947;8948;8949	8946					-0.004788821105421448
DLDSRVLYY	9	Unmodified	_DLDSRVLYY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2879028320312	2	572.287671	1142.56079	-0.51693	-0.00029583	-0.0046851	-2.6812E-06	-0.52162	-0.00029851	572.2876768286611	65.5	1.333	65.249	64.864	66.197	-0.25112					82	32	3	0	0	0	0.077175	6	7456	7447;7456;7467;7479;7491;7505		118.74	46.866	1	17380000			7402	4465	4761	4778	8950;8951;8952;8953;8954;8955	8951					-0.004788821105421448
DLDTFFIF	8	Unmodified	_DLDTFFIF_					0	0	0			REV__ENSG00000197233|ENST00000335302|OR1J2	REV__ENSG00000197233|ENST00000335302|OR1J2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.25	2	509.250026	1016.4855	-0.44804	-0.00022816	0.25585	0.00013029	-0.19218	-9.787E-05	509.2506213968544	52.565	0.84764	52.438	51.824	52.672	-0.12705					41	21	3	0	0	0	0.85409	1	5460	5460		54.765	1.828	1	958700	+		7403	28280	4762	4779	8956	8956					-0.02208439570961218
DLDTFFIF	8	Unmodified	_DLDTFFIF_					0	0	0			REV__ENSG00000197233|ENST00000335302|OR1J2	REV__ENSG00000197233|ENST00000335302|OR1J2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2502136230469	2	509.250026	1016.4855	-0.013315	-6.7807E-06	-1.6831	-0.00085713	-1.6964	-0.00086391	509.2491878698246	52.751	0.63047	52.492	52.173	52.803	-0.25838					32	15	3	0	0	0	0.71717	2	5489	5478;5489		65.897	9.1764	1	877840	+		7404	28280	4762	4779	8957;8958	8958					-0.02208439570961218
DLDYYFAL	8	Unmodified	_DLDYYFAL_					0	0	0			REV__nc|ENSG00000042062|Q96MK2|RIPOR3	REV__nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2501525878906	2	510.239658	1018.46476	-0.21166	-0.000108	-3.576	-0.0018246	-3.7877	-0.0019326	510.23779927352234	52.558	0.24298	52.368	52.267	52.51	-0.18982					8	5	2	0	0	0	0.027866	1	5459	5459		26.796	11.154	1	77360	+		7405	20098	4763	4780	8959	8959					-0.043730299506364645
DLEAAFIY	8	Unmodified	_DLEAAFIY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7667236328125	2	471.234376	940.454199	1.2235	0.00057657	4.1578	0.0019593	5.3813	0.0025359	471.23816829897817	71.302	0.47118	71.013	70.802	71.273	-0.28858					21	11	3	0	0	0	0.027866	1	8625	8625		65.897	4.9255	1	295470			7406	1272	4764	4781	8960	8960					-0.01841012605063952
DLEAALKKMYP	11	Unmodified	_DLEAALKKMYP_					0	0	0			REV__ENST00000472541.5_1_1:1235057-1244982:-|nuORF	REV__ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	639.8425903320312	2	639.841756	1277.66896	0.060115	3.8464E-05	3.6525	0.0023371	3.7127	0.0023755	640.3458355327866	105.37	0.36747	105.21	105.09	105.45	-0.16484					28	9	4	0	0	0	1.0238	1	13131	13131		31.53	4.4825	1	889270	+		7407	23221	4765	4782	8961	8961					0.04123166148406199
DLEEHYTPV	9	Unmodified	_DLEEHYTPV_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3;nc|ENSG00000182077|Q3KNS1-2|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.2534790039062	2	551.756204	1101.49785	-0.4181	-0.00023069	3.7486	0.0020683	3.3305	0.0018376	551.7579939763783	45.596	0.83969	45.596	45.079	45.919	0					35	24	2	0	0	0	0.024381	1	4483	4483		45.952	0	1	328320			7408	18566	4766	4783	8962	8962					-0.04883447898578197
DLEGAQETDVD	11	Unmodified	_DLEGAQETDVD_					0	0	0		nc|ENSG00000150510|Q86V42-2|FAM124A;ENSG00000150510|ENST00000322475|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	595.2598266601562	2	596.254222	1190.49389	-1.702	-0.0010148	1.9393	0.0011563	0.23733	0.00014151	596.75869280499	76.213	0.43498	76.213	75.956	76.391	0					14	10	2	0	0	0	0.024797	1	9371	9371		54.722	16.911	1	151380			7409	6140	4767	4784	8963	8963					-0.09373582182934115
DLEIELLK	8	Unmodified	_DLEIELLK_					0	0	0		ENST00000475858.1_1_10:14563191-14564038:-|nuORF;nc|ENSG00000065809|Q9H098|FAM107B;ENSG00000065809|ENST00000181796|FAM107B	ENST00000475858.1_1_10:14563191-14564038:-|nuORF	ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7832946777344	2	486.784233	971.553913	0.32937	0.00016033	-3.2379	-0.0015762	-2.9085	-0.0014158	486.78254980468114	32.243	0.56378	32.051	31.814	32.377	-0.19261					29	12	3	0	0	0	0.93274	1	2203	2203		47.916	3.7988	1	501140			7410	1319	4768	4785	8964	8964					0.06699805008906878
DLEIFNLPN	9	Unmodified	_DLEIFNLPN_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.7871704101562	2	537.776939	1073.53933	-0.83952	-0.00045147	1.4289	0.00076844	0.58939	0.00031696	537.7774293107315	79.977	1.0444	79.977	79.701	80.746	0					38	24	2	0	0	0	0.024374	1	9900	9900		32.812	0	1	424650			7411	6178	4769	4786	8965	8965					0.005497328607589225
DLEIFNLPN	9	Unmodified	_DLEIFNLPN_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.776939	1073.53933	-1.15	-0.00061843	1.5605	0.00083919	0.4105	0.00022076	537.7775991417659	79.945	1.0081	79.967	79.645	80.654	0.021439	-0.057886	-0.00020589	NaN	32.812	50	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465200			7412	6178	4769	4786							0.005497328607589225
DLEIFNLPN	9	Unmodified	_DLEIFNLPN_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.776939	1073.53933	-0.72317	-0.0003889	7.5996	0.0040869	6.8765	0.003698	537.7788787682683	80.325	0.33334	80.179	80.076	80.409	-0.146	0.15451	0.0062895	NaN	32.812	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91840			7413	6178	4769	4786							0.005497328607589225
DLEKLINPSG	10	Unmodified	_DLEKLINPSG_					0	0	0			REV__TRMT10A|p.D189G|1|0.83|ENSG00000145331|chr4:99553864-99553864|T/C|missense_variant	REV__TRMT10A|p.D189G|1|0.83|ENSG00000145331|chr4:99553864-99553864|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.77587890625	2	543.295496	1084.57644	-0.67056	-0.00036431	1.6054	0.00087221	0.93484	0.00050789	543.2960932228349	67.329	0.60671	67.352	67.028	67.635	0.023911					38	14	4	0	0	0	0.03519	1	7988	7988		64.207	18.255	1	414720	+		7414	37731	4770	4787	8966	8966					0.03753404406506888
DLEKLYLYLQL	11	Unmodified	_DLEKLYLYLQL_					0	0	0		RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.74322509765625	3	470.934149	1409.78062	0.15557	7.3261E-05	3.8338	0.0018055	3.9893	0.0018787	471.26925591487253	47.447	0.6715	47.447	47.076	47.748	0					32	19	2	0	0	0	0.02477	1	4739	4739		17.167	3.6588	1	1015600			7415	9074	4771	4788	8967	8967					0.09211923777183983
DLEKLYLYLQL	11	Unmodified	_DLEKLYLYLQL_					0	0	0		RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	470.934149	1409.78062	0.4962	0.00023368	5.4384	0.0025611	5.9346	0.0027948	471.2705320795812	47.603	0.79396	47.45	46.94	47.734	-0.153	0.005313	0.00014086	NaN	12.433	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	832650			7416	9074	4771	4788							0.09211923777183983
DLEKLYLYLQL	11	Unmodified	_DLEKLYLYLQL_					0	0	0		RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	470.934149	1409.78062	-0.36541	-0.00017208	5.9052	0.002781	5.5398	0.0026089	471.2705440514394	47.377	0.67638	47.436	47.032	47.708	0.059097	-0.0081824	0.00080037	NaN	12.433	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687030			7417	9074	4771	4788							0.09211923777183983
DLEKTMEN	8	Oxidation (M)	_DLEKTM(Oxidation (M))EN_		DLEKTM(1)EN		DLEKTM(85)EN	0	0	1		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2740478515625	2	498.221139	994.427726	-0.74029	-0.00036883	0.31953	0.0001592	-0.42075	-0.00020963	498.22128206419194	39.904	1.1969	39.792	39.255	40.452	-0.11223					43	32	2	0	0	0	0.027866	1	3490	3490		84.916	31.564	1	155300			7418	10159	4772	4789	8968	8968		427			-0.06971069558665022
DLELALNKT	9	Unmodified	_DLELALNKT_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8001708984375	2	508.784764	1015.55498	-0.32386	-0.00016478	1.2305	0.00062608	0.90668	0.0004613	508.7852362739643	31.239	0.62096	30.998	30.711	31.332	-0.24109					23	15	2	0	0	0	0.023454	1	2032	2032		52.937	0	1	547160			7419	6185	4773	4790	8969	8969					0.04782019377796587
DLELKEPDP	9	Unmodified	_DLELKEPDP_					0	0	0			REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.325927734375	2	528.266404	1054.51826	0.36944	0.00019516	3.0071	0.0015885	3.3765	0.0017837	528.7708910338412	72.44	0.46203	72.158	71.882	72.344	-0.28124					18	11	2	0	0	0	0.024506	1	8776	8776		6.3127	0	1	169450	+		7420	23061	4774	4791	8970	8970					-0.006822772387749865
DLELPEPLT	9	Unmodified	_DLELPEPLT_					0	0	0			REV__ENSG00000126070|ENST00000373191|AGO3	REV__ENSG00000126070|ENST00000373191|AGO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.78466796875	2	513.771322	1025.52809	-0.30845	-0.00015847	1.5418	0.00079212	1.2333	0.00063365	513.7719707411838	66.633	0.26259	66.385	66.179	66.441	-0.24839					10	6	2	0	0	0	0.024457	1	7637	7637		37.159	10.363	1	412170	+		7421	22878	4775	4792	8971	8971					0.016349107666201235
DLELPEPLT	9	Unmodified	_DLELPEPLT_					0	0	0			REV__ENSG00000126070|ENST00000373191|AGO3	REV__ENSG00000126070|ENST00000373191|AGO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7869262695312	2	513.771322	1025.52809	-0.58797	-0.00030208	1.6828	0.00086459	1.0949	0.00056251	513.7719197890992	66.609	0.37153	66.385	66.106	66.478	-0.22374					12	9	2	0	0	0	0.024427	1	7645	7645		42.396	6.7778	1	269720	+		7422	22878	4775	4792	8972	8972					0.016349107666201235
DLELRRYL	8	Unmodified	_DLELRRYL_					0	0	0		ENST00000597479.1_1_19:17163486-17163834:-|nuORF	ENST00000597479.1_1_19:17163486-17163834:-|nuORF	ENST00000597479.1_1_19:17163486-17163834:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8003540039062	2	539.306198	1076.59784	0.05085	2.7424E-05	1.8932	0.001021	1.944	0.0010484	539.3078263223022	68.597	0.51505	68.354	68.072	68.587	-0.24277					32	12	4	0	0	0	0.027866	1	7915	7915		40.573	9.0428	1	1052500			7423	17449	4776	4793	8973	8973					0.06260834225895451
DLEQKRHM	8	Unmodified	_DLEQKRHM_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2393188476562	2	528.766383	1055.51821	0.37175	0.00019657	4.2207	0.0022318	4.5925	0.0024284	529.2685865011615	68.18	0.84286	67.95	67.637	68.48	-0.23048					61	20	4	0	0	0	0.027866	1	7940	7940		24.203	5.0992	1	1211800	+		7424	27860	4777	4794	8974	8974					-0.007325557197418675
DLERKKKN	8	Unmodified	_DLERKKKN_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.28857421875	2	515.803823	1029.59309	-0.099386	-5.1264E-05	2.9121	0.0015021	2.8127	0.0014508	515.8049896328771	40.228	0.49082	40.003	39.696	40.187	-0.225					18	12	2	0	0	0	0.027866	1	3438	3438		21.96	0	1	322950	+		7425	25524	4778	4795	8975	8975					0.07947950083143951
DLERKVESL	9	Unmodified	_DLERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.8004150390625	2	544.800946	1087.58734	-0.9605	-0.00052328	-0.026675	-1.4532E-05	-0.98718	-0.00053781	544.8009525720225	45.105	1.477	45.006	44.672	46.149	-0.099449					92	40	3	0	0	0	0.016542	5	4270	4234;4246;4258;4270;4283		154.12	28.304	1	36239000			7426	992	4779	4796	8976;8977;8978;8979;8980	8979					0.04704806780819126
DLERKVESL	9	Unmodified	_DLERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.80078125	2	544.800946	1087.58734	-0.30934	-0.00016853	-0.66145	-0.00036036	-0.97079	-0.00052888	544.8006001861061	45.361	1.3832	45.108	44.67	46.053	-0.25252					96	37	3	0	0	0	0.025498	5	4281	4257;4269;4281;4293;4305		145.16	36.943	1	35369000			7427	992	4779	4796	8981;8982;8983;8984;8985	8983					0.04704806780819126
DLERKVESL	9	Unmodified	_DLERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.8005981445312	2	544.800946	1087.58734	-0.96088	-0.00052349	0.10645	5.7993E-05	-0.85443	-0.00046549	544.8010530365178	45.34	1.5115	45.129	44.637	46.148	-0.21109					95	41	3	0	0	0	0.030064	5	4293	4257;4269;4281;4293;4306		141.52	38.37	1	34916000			7428	992	4779	4796	8986;8987;8988;8989;8990	8989					0.04704806780819126
DLERTIAL	8	Unmodified	_DLERTIAL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.794921875	2	465.766374	929.518196	-0.02206	-1.0275E-05	0.46101	0.00021472	0.43895	0.00020445	465.7663704003832	33.754	0.75359	33.528	33.278	34.031	-0.22618					39	18	3	0	0	0	0.027866	1	2490	2490		68.485	15.133	1	1140000			7429	2521	4780	4797	8991	8991					0.05061767551910634
DLETLHHGL	9	Unmodified	_DLETLHHGL_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.768310546875	2	517.766906	1033.51926	-0.31703	-0.00016415	3.4987	0.0018115	3.1817	0.0016474	517.7685852186431	39.507	0.77572	39.284	38.999	39.775	-0.22311					48	19	4	0	0	0	0.64155	1	3343	3343		50.025	4.0523	1	2859800	+		7430	24548	4781	4798	8992	8992					0.0038398192079966975
DLETVVWAL	9	Unmodified	_DLETVVWAL_					0	0	0		ENST00000373731.6_1_6:36442658-36442763:+|nuORF	ENST00000373731.6_1_6:36442658-36442763:+|nuORF	ENST00000373731.6_1_6:36442658-36442763:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.27880859375	2	523.281857	1044.54916	-0.4199	-0.00021973	-0.42742	-0.00022366	-0.84732	-0.00044339	523.2816540583705	56.802	0.45602	56.635	56.402	56.858	-0.1672					16	11	2	0	0	0	0.024412	1	6169	6169		31.955	0	1	173920			7431	13090	4782	4799	8993	8993					0.02866920866131295
DLEVAKRAI	9	Unmodified	_DLEVAKRAI_					0	0	0			REV__ENSG00000137947|ENST00000370500|GTF2B	REV__ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.80078125	2	507.800749	1013.58694	-0.566	-0.00028742	-0.46637	-0.00023682	-1.0324	-0.00052424	507.80050060695794	31.108	1.6361	30.923	30.533	32.169	-0.18503					104	39	6	0	0	0	0.15029	1	2010	2010		99.375	9.0051	1	12349000	+		7432	23799	4783	4800	8994	8994					0.08069431851606623
DLEVASDPLY	10	Unmodified	_DLEVASDPLY_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2431030273438	2	561.271687	1120.52882	-0.16165	-9.0731E-05	-2.2081	-0.0012393	-2.3697	-0.0013301	561.2703234966508	75.903	0.8214	75.644	75.358	76.179	-0.25865					51	20	3	0	0	0	0.03519	1	9043	9043		49.442	0	1	536130			7433	6602	4784	4801	8995	8995					-0.026622945843200796
DLFARARM	8	Unmodified	_DLFARARM_					0	0	0			REV__ENST00000502947.1_1_4:3317897-3344786:+|nuORF	REV__ENST00000502947.1_1_4:3317897-3344786:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2646179199219	2	490.260736	978.50692	-0.22929	-0.00011241	1.8341	0.0008992	1.6048	0.00078679	490.2623871136946	104.52	0.46736	104.4	104.17	104.64	-0.12561					17	11	2	0	0	0	1.0574	1	12998	12998		25.45	0	1	149310	+		7434	25274	4785	4802	8996	8996					0.016806669767788662
DLFCAALRG	9	Unmodified	_DLFCAALRG_					0	0	0			REV__ENSG00000068976|ENST00000164139|PYGM;REV__ENSG00000100994|ENST00000216962|PYGB	REV__ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7730712890625	2	483.247295	964.480036	-1.6417	-0.00079336	2.4524	0.0011851	0.81069	0.00039176	483.24844614293346	49.309	0.78099	49.384	48.987	49.768	0.074196					31	20	2	0	0	0	0.024263	1	5060	5060		42.396	0	1	269350	+		7435	20393;21172	4786	4803	8997	8997					-0.003624416344223391
DLFDHIHGSV	10	Unmodified	_DLFDHIHGSV_					0	0	0			REV__ENST00000515197.2_1_7:135347327-135357590:+|nuORF	REV__ENST00000515197.2_1_7:135347327-135357590:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.29638671875	2	570.277638	1138.54072	-0.019935	-1.1368E-05	-0.59204	-0.00033763	-0.61197	-0.00034899	570.7793451981343	61.358	0.33118	61.152	60.928	61.259	-0.20599					12	7	2	0	0	0	0.03519	1	6865	6865		39.253	12.56	1	69342	+		7436	34189	4787	4804	8998	8998					-0.023006330504813377
DLFEEPLPTC	10	Unmodified	_DLFEEPLPTC_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.82373046875	2	582.26809	1162.52163	0.046549	2.7104E-05	-2.2344	-0.001301	-2.1879	-0.0012739	582.2670813091274	78.228	0.90224	78.036	77.604	78.506	-0.1921					25	21	2	0	0	0	0.03519	1	9695	9695		32.812	1.2826	1	155380	+		7437	19683	4788	4805	8999	8999					-0.053133504563902534
DLFHGQLK	8	Unmodified	_DLFHGQLK_					0	0	0		USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.3004150390625	2	479.261259	956.507966	-0.019956	-9.564E-06	-2.2572	-0.0010818	-2.2772	-0.0010914	479.2603451586097	33.015	0.48733	32.815	32.569	33.056	-0.20019					23	11	3	0	0	0	0.027866	1	2351	2351		44.531	29.867	1	180430			7438	38137	4789	4806	9000	9000					0.02797204617331772
DLFHGQLK	8	Unmodified	_DLFHGQLK_					0	0	0		USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.261259	956.507966	0.19463	9.3277E-05	-4.0829	-0.0019568	-3.8882	-0.0018635	479.25931878467827	32.941	0.41312	32.71	32.503	32.916	-0.23107	-0.035565	-0.00033749	NaN	44.531	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248760			7439	38137	4789	4806							0.02797204617331772
DLFHGQLK	8	Unmodified	_DLFHGQLK_					0	0	0		USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.261259	956.507966	-0.25714	-0.00012324	-3.3175	-0.00159	-3.5747	-0.0017132	479.25954017166623	32.877	0.40258	32.712	32.516	32.918	-0.16565	-0.034001	0.0003961	NaN	44.531	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194590			7440	38137	4789	4806							0.02797204617331772
DLFKSKTNT	9	Unmodified	_DLFKSKTNT_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2867431640625	2	527.282389	1052.55022	-1.2028	-0.0006342	-4.3549	-0.0022963	-5.5577	-0.0029305	527.2799186064382	60.645	0.638	60.724	60.465	61.103	0.078888					30	16	2	0	0	0	0.024344	1	6869	6869		54.776	20.604	1	1463000			7441	4017	4790	4807	9001	9001					0.026051352350577872
DLFKSKTNT	9	Unmodified	_DLFKSKTNT_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	527.282389	1052.55022	-0.81627	-0.0004304	-4.6831	-0.0024693	-5.4994	-0.0028997	527.2795913308042	60.964	0.70877	60.751	60.493	61.202	-0.21339	-0.043815	-4.264E-05	NaN	54.776	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1506800			7442	4017	4790	4807							0.026051352350577872
DLFKSKTNT	9	Unmodified	_DLFKSKTNT_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.282389	1052.55022	-0.31778	-0.00016756	-8.6549	-0.0045636	-8.9727	-0.0047311	527.7791920312937	61.202	0.32545	60.996	60.849	61.175	-0.20599	0.2011	-0.0042311	NaN	54.776	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44304			7443	4017	4790	4807							0.026051352350577872
DLFLIICII	9	Unmodified	_DLFLIICII_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7972412109375	2	531.817021	1061.61949	-1.3531	-0.0007196	1.6062	0.00085419	0.25308	0.00013459	531.8176951478457	90.132	1.0716	90.132	89.774	90.845	0					49	25	3	0	0	0	0.024535	1	11481	11481		25.45	0	1	430640			7444	5030	4791	4808	9002	9002					0.09114502930242452
DLFRAQLI	8	Unmodified	_DLFRAQLI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7944641113281	2	488.284734	974.554916	-1.352	-0.00066015	-0.63214	-0.00030866	-1.9841	-0.00096881	488.2841203382612	62.712	0.47218	62.472	62.264	62.736	-0.23926					22	13	3	0	0	0	0.027866	1	7314	7314		76.774	7.9873	1	2132300			7445	10947	4792	4809	9003	9003					0.06662064168483539
DLFRAQLI	8	Unmodified	_DLFRAQLI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.284734	974.554916	-0.94502	-0.00046144	-1.0459	-0.00051071	-1.9909	-0.00097214	488.2839560460484	62.475	0.45673	62.475	62.313	62.769	0	0.0045295	-0.00026861	NaN	76.774	25	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2125800			7446	10947	4792	4809							0.06662064168483539
DLFRAQLI	8	Unmodified	_DLFRAQLI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.284734	974.554916	-1.0032	-0.00048987	-0.60283	-0.00029435	-1.6061	-0.00078423	488.28406176195523	62.402	0.49622	62.464	62.272	62.769	0.062763	-0.006275	0.00016409	NaN	76.774	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3216600			7447	10947	4792	4809							0.06662064168483539
DLFSVQELT	9	Unmodified	_DLFSVQELT_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2852172851562	2	526.268947	1050.52334	-0.70976	-0.00037352	1.0031	0.0005279	0.29334	0.00015438	526.2691859856716	66.431	0.49377	66.207	65.945	66.439	-0.22374					33	12	5	0	0	0	0.024374	1	7610	7610		40.778	1.5253	1	1315300	+		7448	24756	4793	4810	9004	9004					0.00010026623863268469
DLFVPKFS	8	Unmodified	_DLFVPKFS_					0	0	0		CON__Q9TT36;ENSG00000123561|ENST00000372563|SERPINA7	CON__Q9TT36	CON__Q9TT36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.77655029296875	2	476.760561	951.506569	-0.4593	-0.00021898	3.3282	0.0015867	2.8689	0.0013678	476.76259762683316	69.242	0.21162	68.98	68.789	69.001	-0.26166					6	4	2	0	0	0	0.027866	1	8015	8015		18.324	0	1	51082		+	7449	574	4794	4811	9005	9005					0.02887570528582728
DLFYQINTSI	10	Unmodified	_DLFYQINTSI_					0	0	0			REV__ENSG00000067992|ENST00000379162|PDK3	REV__ENSG00000067992|ENST00000379162|PDK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9144287109375	3	405.208161	1212.60265	0.48206	0.00019533	2.5367	0.0010279	3.0187	0.0012232	405.5438586240198	20.34	0.24448	20.172	20.002	20.246	-0.16774					7	4	2	0	0	0	0.03519	1	536	536		27.644	9.8108	1	8673.9	+		7450	20369	4795	4812	9006	9006					0.004856735780094823
DLGAALADW	9	Unmodified	_DLGAALADW_					0	0	0		nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7841491699219	2	466.229625	930.444697	-0.038216	-1.7817E-05	3.5547	0.0016573	3.5165	0.0016395	466.2312682641163	46.724	0.55651	46.724	46.447	47.003	0					26	14	2	0	0	0	0.024487	1	4619	4619		24.203	3.7209	1	384310			7451	2856	4796	4813	9007	9007					-0.02330780890576989
DLGDTSFRSE	10	Unmodified	_DLGDTSFRSE_					0	0	0		ENSG00000205592|ENST00000454784|MUC19;nc|ENSG00000205592|Q7Z5P9-2|MUC19	ENSG00000205592|ENST00000454784|MUC19	ENSG00000205592|ENST00000454784|MUC19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.7572631835938	2	563.754192	1125.49383	-0.87383	-0.00049262	-1.2195	-0.00068748	-2.0933	-0.0011801	563.7518692514437	32.106	0.54438	32.169	31.921	32.465	0.062885					23	13	3	0	0	0	0.03519	1	2156	2156		32.751	4.8683	1	124280			7452	10435	4797	4814	9008	9008					-0.06389537392283273
DLGHGLRLI	9	Unmodified	_DLGHGLRLI_					0	0	0		nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1;nc|ENSG00000229769|A0A0K0K1G8|TRBV10-2	nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2980041503906	2	497.295633	992.576714	0.5982	0.00029748	3.2278	0.0016051	3.826	0.0019026	497.29713382221155	69.867	2.3595	69.574	68.634	70.993	-0.29291					150	63	4	0	0	0	0.59099	2	8535	8342;8535		53.351	8.861	1	3690300			7453	18694	4798	4815	9009;9010	9010					0.0801286891704649
DLGILGEALT	10	Unmodified	_DLGILGEALT_					0	0	0		ENST00000512379.5_1_17:48610205-48619515:+|nuORF;ENSG00000049283|ENST00000268933|EPN3	ENST00000512379.5_1_17:48610205-48619515:+|nuORF	ENST00000512379.5_1_17:48610205-48619515:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.31304931640625	2	501.279315	1000.54408	0.34047	0.00017067	-0.48353	-0.00024239	-0.14306	-7.1714E-05	501.27906300893017	76.37	1.0742	76.382	75.863	76.937	0.011635					72	26	5	0	0	0	0.03519	1	9365	9365		49.442	0	1	6499600			7454	15856	4799	4816	9011	9011					0.043826170035117684
DLGKKIAL	8	Unmodified	_DLGKKIAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	429.2763977050781	2	429.276378	856.538203	-0.34912	-0.00014987	0.14506	6.2269E-05	-0.20406	-8.7599E-05	429.27638634205374	43.197	1.3586	42.971	42.675	44.033	-0.22597					88	36	4	0	0	0	0.15369	1	3909	3909		148.21	14.737	1	12088000			7455	5266;17915	4800	4817	9012	9012					0.10419563282493982
DLGKKIAL	8	Unmodified	_DLGKKIAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	429.276378	856.538203	0.30953	0.00013288	-0.28551	-0.00012256	0.024028	1.0314E-05	429.27622469909545	43.008	1.3736	42.896	42.614	43.988	-0.11253	-0.038338	-0.00022636	NaN	148.21	83	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10336000			7456	5266;17915	4800	4817							0.10419563282493982
DLGKKIAL	8	Unmodified	_DLGKKIAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	429.276378	856.538203	-0.010114	-4.3416E-06	-0.028484	-1.2228E-05	-0.038598	-1.6569E-05	429.2763251223275	43.173	1.3085	42.935	42.639	43.947	-0.23736	0.0010371	-5.6903E-06	NaN	148.21	80	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11402000			7457	5266;17915	4800	4817							0.10419563282493982
DLGKLPSGT	9	Unmodified	_DLGKLPSGT_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MSMS	OPSCC_40_ClassI_Rep-2	5	444.2431640625	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.23	1	103.1	102.6	103.6	-0.12783								0	0	0	0.64798	1	12848	12848		31.53	2.3803	1				7458	6621	4801	4818	9013	9013					0.028217921435384596
DLGLHEPQ	8	Unmodified	_DLGLHEPQ_					0	0	0			REV__nc|ENSG00000107745|Q9BPX6-2|MICU1	REV__nc|ENSG00000107745|Q9BPX6-2|MICU1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.2792663574219	2	454.727249	907.439946	-0.06032	-2.7429E-05	0.36888	0.00016774	0.30856	0.00014031	454.7272517305609	24.715	0.37728	24.5	24.257	24.635	-0.2151					19	8	3	0	0	0	0.027866	1	1105	1105		35.618	10.168	1	124140	+		7459	21683	4802	4819	9014	9014					-0.01747665033337853
DLGLHEPQ	8	Unmodified	_DLGLHEPQ_					0	0	0			REV__nc|ENSG00000107745|Q9BPX6-2|MICU1	REV__nc|ENSG00000107745|Q9BPX6-2|MICU1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	454.727249	907.439946	-0.012476	-5.673E-06	0.16964	7.7139E-05	0.15716	7.1466E-05	454.7270931545808	24.366	0.61215	24.366	23.951	24.563	0	-0.037194	-0.00033919	NaN	35.618	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143380	+		7460	21683	4802	4819							-0.01747665033337853
DLGLHEPQ	8	Unmodified	_DLGLHEPQ_					0	0	0			REV__nc|ENSG00000107745|Q9BPX6-2|MICU1	REV__nc|ENSG00000107745|Q9BPX6-2|MICU1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.727249	907.439946	-0.90299	-0.00041061	1.4075	0.00064004	0.50453	0.00022942	454.7276358481747	24.391	0.57944	24.344	24.044	24.623	-0.047148	-0.059462	0.00078661	NaN	35.618	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132260	+		7461	21683	4802	4819							-0.01747665033337853
DLGLLAGLIF	10	Unmodified	_DLGLLAGLIF_					0	0	0		nc|ENSG00000091137|O43511-2|SLC26A4;ENSG00000091137|ENST00000644269|SLC26A4	nc|ENSG00000091137|O43511-2|SLC26A4	nc|ENSG00000091137|O43511-2|SLC26A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2992553710938	2	516.310418	1030.60628	-0.20262	-0.00010461	4.3251	0.0022331	4.1224	0.0021285	516.3126278442674	67.986	0.22641	68.004	67.892	68.118	0.018913					8	5	2	0	0	0	0.03519	1	8046	8046		25.45	1.2474	1	134000			7462	1955	4804	4820	9015	9015					0.09220388142512093
DLGLQKCF	8	Unmodified	_DLGLQKCF_					0	0	0		ENST00000361687.8_1_4:107230107-107237153:-|nuORF	ENST00000361687.8_1_4:107230107-107237153:-|nuORF	ENST00000361687.8_1_4:107230107-107237153:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2875061035156	2	462.236396	922.458238	0.66204	0.00030602	-2.4369	-0.0011264	-1.7749	-0.00082042	462.23474343669096	52.663	0.5233	52.755	52.565	53.088	0.091938					19	13	2	0	0	0	0.027866	1	5602	5602		47.916	0	1	104560			7463	12802	4805	4821	9016	9016					-0.006092463829759254
DLGRPVCF	8	Unmodified	_DLGRPVCF_					0	0	0		ENST00000497447.5_1_3:119198811-119198892:+|nuORF	ENST00000497447.5_1_3:119198811-119198892:+|nuORF	ENST00000497447.5_1_3:119198811-119198892:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.77734375	2	453.728738	905.442923	0.56478	0.00025626	1.9015	0.00086278	2.4663	0.001119	453.72955763147195	41.184	0.59712	41.184	40.871	41.469	0					22	16	2	0	0	0	0.027866	1	3675	3675		44.531	19.081	1	194780			7464	15594	4806	4822	9017	9017					-0.01358113180174314
DLGTALKPLV	10	Unmodified	_DLGTALKPLV_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2688598632812	2	513.813325	1025.6121	-0.73347	-0.00037687	2.3421	0.0012034	1.6087	0.00082655	513.8137479739198	79.787	0.37759	79.808	79.561	79.938	0.021439					11	8	2	0	0	0	0.03519	1	9796	9796		60.118	24.5	1	60935	+		7465	24243	4807	4823	9018	9018					0.10031486654156652
DLGVRLHA	8	Unmodified	_DLGVRLHA_					0	0	0			REV__ENST00000588848.5_3_19:13260460-13260511:-|nuORF	REV__ENST00000588848.5_3_19:13260460-13260511:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2197570800781	2	440.753601	879.49265	0.4145	0.00018269	0.7799	0.00034375	1.1944	0.00052644	440.7535071278216	25.736	0.3859	25.816	25.622	26.008	0.08009					14	8	3	0	0	0	0.027866	1	1212	1212		25.45	0	1	58105	+		7466	35658	4808	4824	9019	9019					0.04808337820122688
DLGVRVTLV	9	Unmodified	_DLGVRVTLV_					0	0	0			REV__ENST00000571697.5_1_17:7217203-7217998:-|nuORF	REV__ENST00000571697.5_1_17:7217203-7217998:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2977294921875	2	486.297842	970.581131	-0.13158	-6.3987E-05	-0.10854	-5.2783E-05	-0.24012	-0.00011677	486.2977452954503	67.653	0.64139	67.365	67.03	67.671	-0.28835					46	15	4	0	0	0	0.42604	1	8040	8040		64.207	2.0999	1	2846800	+		7467	35399	4809	4825	9020	9020					0.09466333339946686
DLGWVLLLL	9	Unmodified	_DLGWVLLLL_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3047485351562	2	521.320786	1040.62702	-0.47964	-0.00025005	-2.83	-0.0014753	-3.3097	-0.0017254	521.319495296269	82.195	0.59262	82.221	82.023	82.616	0.025711					21	13	2	0	0	0	0.024487	1	10224	10224		24.203	0	1	139930	+		7468	24020	4810	4826	9021	9021					0.10832978522194026
DLGWVLLLL	9	Unmodified	_DLGWVLLLL_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.320786	1040.62702	-0.79675	-0.00041536	-2.8587	-0.0014903	-3.6554	-0.0019056	521.3192751184248	82.237	0.41753	82.237	82.031	82.449	0	0.012566	0.00078108	NaN	17.365	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151620	+		7469	24020	4810	4826							0.10832978522194026
DLGWVLLLL	9	Unmodified	_DLGWVLLLL_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.320786	1040.62702	1.0043	0.00052356	-4.6763	-0.0024378	-3.672	-0.0019143	521.3184350789103	82.326	0.46555	82.216	82.043	82.509	-0.11006	-0.0086688	-0.001114	NaN	17.365	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147690	+		7470	24020	4810	4826							0.10832978522194026
DLHEINNW	8	Unmodified	_DLHEINNW_					0	0	0		SERPINF1|p.Q178H|1|0.17|ENSG00000132386|chr17:1771966-1771966|A/T|missense_variant	SERPINF1|p.Q178H|1|0.17|ENSG00000132386|chr17:1771966-1771966|A/T|missense_variant	SERPINF1|p.Q178H|1|0.17|ENSG00000132386|chr17:1771966-1771966|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.30615234375	2	520.743431	1039.47231	-0.69709	-0.000363	0.18829	9.8053E-05	-0.50879	-0.00026495	520.7427188660703	46.959	0.47902	47.018	46.803	47.282	0.059097					21	12	2	0	0	0	0.027866	1	4618	4618		53.351	2.016	1	433550			7471	37869	4811	4827	9022	9022					-0.04584877630327355
DLHEKDFSL	9	Unmodified	_DLHEKDFSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.270751953125	2	552.272021	1102.52949	0.18695	0.00010325	1.6954	0.00093634	1.8824	0.0010396	552.2712799286783	51.129	1.0605	50.853	50.552	51.613	-0.27643					96	27	7	0	0	0	0.22379	1	5251	5251		85.862	6.1492	1	4750300			7472	2420	4812	4828	9023	9023					-0.0176745514461345
DLHEKDFSL	9	Unmodified	_DLHEKDFSL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.2719116210938	2	552.272021	1102.52949	0.52436	0.00028959	1.5695	0.0008668	2.0939	0.0011564	552.2710677733749	50.945	0.87764	50.764	50.462	51.34	-0.18071					94	22	7	0	0	0	0.22379	1	5213	5213		85.862	9.0877	1	4482600			7473	2420	4812	4828	9024	9024					-0.0176745514461345
DLHFGPIIL	9	Unmodified	_DLHFGPIIL_					0	0	0			REV__ENST00000488748.1_1_20:60777823-60778294:+|nuORF	REV__ENST00000488748.1_1_20:60777823-60778294:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7745971679688	2	512.794935	1023.57532	-0.31585	-0.00016197	-3.2586	-0.001671	-3.5745	-0.001833	512.7937024083786	47.728	0.1482	47.63	47.557	47.705	-0.097553					5	3	2	0	0	0	0.024517	1	4685	4685		12.959	0.75233	1	56558	+		7474	33654	4813	4829	9025	9025					0.06447234828283399
DLHKQWENTE	10	Unmodified	_DLHKQWENTE_					0	0	0		ENSG00000189367|ENST00000483725|KIAA0408	ENSG00000189367|ENST00000483725|KIAA0408	ENSG00000189367|ENST00000483725|KIAA0408	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.77685546875	3	433.87032	1298.58913	-0.17643	-7.6547E-05	0.26862	0.00011655	0.092193	4E-05	433.8703609349955	31.326	0.82743	31.141	30.865	31.693	-0.18503					57	20	4	0	0	0	0.03519	1	2143	2143		16.007	11.363	1	1544000			7475	9806	4814	4830	9026	9026					-0.04822184201248092
DLHLKGQAV	9	Unmodified	_DLHLKGQAV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.7793884277344	2	490.779816	979.545079	-0.21868	-0.00010732	0.59279	0.00029093	0.37412	0.00018361	490.7797878116436	37.212	0.61652	37.019	36.774	37.39	-0.193					43	15	4	0	0	0	0.19099	1	2978	2978		90.37	27.064	1	1859600			7476	10867	4815	4831	9027	9027					0.054488761630864246
DLHNPKDSISI	11	Unmodified	_DLHNPKDSISI_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENST00000489038.5_1_7:33016023-33032371:+|nuORF	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.5501403808594	3	413.550698	1237.63027	-0.11815	-4.8862E-05	-0.55344	-0.00022888	-0.6716	-0.00027774	413.55049374276626	29.569	1.5636	29.572	29.055	30.618	0.0031357					57	38	2	0	0	0	0.73278	1	1814	1814		61.765	14.537	1	5491400			7477	3937	4816	4832	9028	9028					0.020955768382464157
DLHPGNLL	8	Unmodified	_DLHPGNLL_					0	0	0		ENST00000553646.1_1_14:75375979-75376912:-|nuORF;ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1	ENST00000553646.1_1_14:75375979-75376912:-|nuORF	ENST00000553646.1_1_14:75375979-75376912:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.7564697265625	2	439.74016	877.465767	0.32606	0.00014338	0.4415	0.00019415	0.76756	0.00033753	439.74031089279885	41.037	0.59599	41.037	40.764	41.36	0					33	16	3	0	0	0	0.027866	1	3651	3651		45.952	0	1	191030			7478	10108	4817	4833	9029	9029					0.022132292089509065
DLHRKVSV	8	Unmodified	_DLHRKVSV_					0	0	0		ENSG00000108551|ENST00000225688|RASD1	ENSG00000108551|ENST00000225688|RASD1	ENSG00000108551|ENST00000225688|RASD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.3026123046875	2	477.279983	952.545414	-0.53689	-0.00025625	4.1967	0.002003	3.6598	0.0017467	477.2817329186359	22.763	0.41605	22.577	22.415	22.831	-0.18539					13	8	2	0	0	0	0.027866	1	853	853		51.335	28.293	1	54978			7479	2906	4818	4834	9030	9030					0.06724295882952447
DLHSHHEL	8	Unmodified	_DLHSHHEL_					0	0	0		ENST00000587353.5_1_18:45394679-45413284:-|nuORF;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.23565673828125	2	494.235773	986.456993	0.010179	5.0307E-06	-0.13138	-6.4931E-05	-0.1212	-5.99E-05	494.23559287953606	22.556	0.87862	22.367	22.102	22.98	-0.18894					42	18	4	0	0	0	0.93274	1	822	822		47.916	3.7988	1	729990			7480	8554	4819	4835	9031	9031					-0.036777444275230664
DLHSHHEL	8	Unmodified	_DLHSHHEL_					0	0	0		ENST00000587353.5_1_18:45394679-45413284:-|nuORF;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.23577880859375	2	494.235773	986.456993	-0.48224	-0.00023834	0.30964	0.00015304	-0.1726	-8.5306E-05	494.23584928434894	22.716	0.73347	22.531	22.236	22.969	-0.18539					37	15	4	0	0	0	0.81662	1	828	828		57.811	4.4598	1	669760			7481	8554	4819	4835	9032	9032					-0.036777444275230664
DLHSHHEL	8	Unmodified	_DLHSHHEL_					0	0	0		ENST00000587353.5_1_18:45394679-45413284:-|nuORF;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2358703613281	2	494.235773	986.456993	0.6704	0.00033134	-1.0923	-0.00053986	-0.4219	-0.00020852	494.2351736958547	22.694	0.69196	22.492	22.194	22.886	-0.20198					39	14	5	0	0	0	0.91239	1	810	810		50.025	7.5501	1	664200			7482	8554	4819	4835	9033	9033					-0.036777444275230664
DLHTTAPQL	9	Unmodified	_DLHTTAPQL_					0	0	0		ENST00000564946.5_1_16:30663032-30664184:+|nuORF;ENST00000565410.5_1_16:30662428-30664184:+|nuORF;ENST00000563399.5_1_16:30662065-30664184:+|nuORF;ENST00000300835.8_2_16:30662428-30664408:+|nuORF;ENST00000568754.5_2_16:30662065-30664408:+|nuORF	ENST00000564946.5_1_16:30663032-30664184:+|nuORF	ENST00000564946.5_1_16:30663032-30664184:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.27392578125	2	498.261456	994.50836	-1.0612	-0.00052876	1.3057	0.00065059	0.24451	0.00012183	498.2621222753891	39.691	0.58014	39.579	39.398	39.978	-0.11223					17	15	2	0	0	0	0.02435	1	3478	3478		42.396	0	1	144190			7483	11911	4820	4836	9034	9034					0.010885795465128467
DLIALGVGSTL	11	Unmodified	_DLIALGVGSTL_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2343139648438	2	529.808239	1057.60193	-0.54349	-0.00028795	0.37717	0.00019983	-0.16632	-8.8118E-05	529.808578313783	67.508	0.66521	67.274	66.97	67.636	-0.23376					36	15	5	0	0	0	0.024803	1	7777	7777		52.937	7.9145	1	383890			7484	735	4821	4837	9035	9035					0.07542878928984464
DLIALKQP	8	Unmodified	_DLIALKQP_					0	0	0			REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2065124511719	2	449.273835	896.533118	0.45332	0.00020366	0.89122	0.0004004	1.3445	0.00060406	449.2738491345553	23.315	0.79813	23.113	22.64	23.438	-0.20193					25	17	2	0	0	0	0.027866	1	853	853		3.6843	0	1	96133	+		7485	20360	4822	4838	9036	9036					0.08071259419909893
DLIAVSNH	8	Unmodified	_DLIAVSNH_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47106643-47106892:+|nuORF;ENST00000467378.1_1_X:47106498-47106892:+|nuORF;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENSG00000102226|ENST00000377107|USP11;ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2763366699219	2	434.729792	867.445031	-0.080851	-3.5148E-05	-3.696	-0.0016068	-3.7768	-0.0016419	434.7303164645701	33.971	0.56573	34.022	33.648	34.214	0.051044					21	13	3	0	0	0	0.027866	1	2389	2389		35.618	0.41757	1	59270			7486	2394;3354	4823	4839	9037	9037					0.006006388292917109
DLIDLKTL	8	Unmodified	_DLIDLKTL_					0	0	0			REV__ENST00000557271.5_1_14:105211116-105211251:+|nuORF	REV__ENST00000557271.5_1_14:105211116-105211251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.8125915527344	2	465.778951	929.543348	-0.78253	-0.00036449	1.403	0.00065348	0.62045	0.00028899	465.7797843813691	38.103	0.30423	37.882	37.686	37.99	-0.22149					13	8	2	0	0	0	0.027866	1	3118	3118		68.787	0	1	360310	+		7487	20063	4824	4840	9038	9038					0.07575822354476713
DLIDNPVI	8	Unmodified	_DLIDNPVI_					0	0	0		nc|ENSG00000165568|Q96JD6-4|AKR1E2;ENSG00000165568|ENST00000298375|AKR1E2	nc|ENSG00000165568|Q96JD6-4|AKR1E2	nc|ENSG00000165568|Q96JD6-4|AKR1E2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7591552734375	2	449.74765	897.480748	-0.25297	-0.00011377	2.3294	0.0010476	2.0764	0.00093386	449.74834637231766	44.248	0.7938	44.284	43.853	44.647	0.0369					28	22	2	0	0	0	0.027866	1	4196	4196		38.806	0	1	147810			7488	7433	4825	4841	9039	9039					0.027906762862812684
DLIDQADPQ	9	Unmodified	_DLIDQADPQ_					0	0	0			REV__nc|ENSG00000184588|Q07343-4|PDE4B	REV__nc|ENSG00000184588|Q07343-4|PDE4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.8104248046875	2	507.740554	1013.46655	-0.16501	-8.3781E-05	-0.96843	-0.00049171	-1.1334	-0.00057549	507.7404835191353	64.035	0.40353	63.807	63.624	64.027	-0.22774					19	9	3	0	0	0	0.024021	1	7288	7288		79.451	2.6769	1	139120	+		7489	27686	4826	4842	9040	9040					-0.0396402093266488
DLIDQADPQ	9	Unmodified	_DLIDQADPQ_					0	0	0			REV__nc|ENSG00000184588|Q07343-4|PDE4B	REV__nc|ENSG00000184588|Q07343-4|PDE4B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.740554	1013.46655	-0.20903	-0.00010613	0.89586	0.00045486	0.68683	0.00034873	507.7409313610452	64.071	0.43476	63.813	63.601	64.035	-0.25824	0.0045704	0.00040613	NaN	79.451	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188300	+		7490	27686	4826	4842							-0.0396402093266488
DLIEKERLHTL	11	Unmodified	_DLIEKERLHTL_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2340087890625	3	456.261148	1365.76161	-0.097815	-4.4629E-05	1.2511	0.00057084	1.1533	0.00052621	456.26124785164694	51.268	0.30222	50.991	50.853	51.156	-0.27643					13	7	3	0	0	0	0.024743	1	5239	5239		23.378	0	1	93332	+		7491	22148	4827	4843	9041	9041					0.09336387206144536
DLIEPLLQL	9	Unmodified	_DLIEPLLQL_					0	0	0		ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6;ENST00000515265.2_1_5:140022188-140024328:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3118286132812	2	527.313158	1052.61176	1.2084	0.00063722	-3.9674	-0.002092	-2.7589	-0.0014548	527.3109520512323	20.47	0.83702	20.539	20.217	21.054	0.068901					41	16	4	0	0	0	0.83071	1	503	503		37.159	2.0071	1	682740			7492	3263	4828	4844	9042	9042					0.08756066934347473
DLIFHVAL	8	Unmodified	_DLIFHVAL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.26922607421875	2	464.268553	926.522553	0.5209	0.00024184	-0.30269	-0.00014053	0.21821	0.00010131	464.2683215064413	83.515	0.84351	83.346	82.99	83.834	-0.16916					39	19	3	0	0	0	0.40853	1	10087	10087		96.048	9.1131	1	547390			7493	9238	4829	4845	9043	9043					0.05635276765463004
DLIGFEFTV	9	Unmodified	_DLIGFEFTV_					0	0	0		ENSG00000149679|ENST00000279101|CABLES2	ENSG00000149679|ENST00000279101|CABLES2	ENSG00000149679|ENST00000279101|CABLES2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7661743164062	2	520.768583	1039.52261	-1.0985	-0.00057208	-3.5312	-0.0018389	-4.6297	-0.002411	520.766710576239	47.412	3.6363	47.471	46.918	50.554	0.059097					219	103	5	0	0	0	0.43973	1	4678	4678		63.306	7.8021	1	75914000			7494	6115	4830	4846	9044	9044					0.00443231974804803
DLIGKLTSL	9	Unmodified	_DLIGKLTSL_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;P4HB-CDK5RAP3|1|fusion;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2923278808594	2	480.292225	958.569897	0.28432	0.00013656	-0.41311	-0.00019841	-0.12879	-6.1856E-05	480.2919837013997	77.993	1.4075	77.731	77.399	78.806	-0.26201					85	32	5	0	0	0	0.013924	4	9290	9278;9290;9302;9316		167.23	37.546	1	7203100			7495	2900	4831	4847	9045;9046;9047;9048	9046					0.08895511245816579
DLIGKLTSL	9	Unmodified	_DLIGKLTSL_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;P4HB-CDK5RAP3|1|fusion;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.29254150390625	2	480.292225	958.569897	0.58191	0.00027949	-0.72011	-0.00034587	-0.13821	-6.638E-05	480.29182211107957	77.917	1.4881	77.674	77.362	78.85	-0.24232					89	34	4	0	0	0	0.034407	3	9285	9285;9297;9309		138.06	25.651	1	7055200			7496	2900	4831	4847	9049;9050;9051	9049					0.08895511245816579
DLIGKLTSL	9	Unmodified	_DLIGKLTSL_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;P4HB-CDK5RAP3|1|fusion;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.29248046875	2	480.292225	958.569897	0.086102	4.1354E-05	-0.33501	-0.0001609	-0.24891	-0.00011955	480.2920066707163	77.852	1.3705	77.69	77.355	78.725	-0.16196					83	31	4	0	0	0	0.013719	2	9258	9258;9270		168.26	37.951	1	6623800			7497	2900	4831	4847	9052;9053	9052					0.08895511245816579
DLIGKLTSL	9	Unmodified	_DLIGKLTSL_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;P4HB-CDK5RAP3|1|fusion;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.292225	958.569897	0.48959	0.00023514	0.35036	0.00016828	0.83995	0.00040342	480.2923414817557	77.646	0.57501	77.646	77.426	78.001	0	-0.027474	0.00053631	NaN	168.26	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444810			7498	2900	4831	4847							0.08895511245816579
DLIGKLTSL	9	Unmodified	_DLIGKLTSL_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;P4HB-CDK5RAP3|1|fusion;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.292225	958.569897	0.66705	0.00032038	-0.010562	-5.0727E-06	0.65649	0.00031531	480.2922662772113	77.842	0.57991	77.631	77.376	77.956	-0.21087	-0.042112	0.00018961	NaN	168.26	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527700			7499	2900	4831	4847							0.08895511245816579
DLIGKLTSL	9	Unmodified	_DLIGKLTSL_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;P4HB-CDK5RAP3|1|fusion;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	480.292225	958.569897	-0.3214	-0.00015437	1.075	0.00051631	0.75359	0.00036194	480.29273945919255	77.651	0.58342	77.666	77.405	77.989	0.015236	-0.0065903	0.0012324	NaN	168.26	28	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532100			7500	2900	4831	4847							0.08895511245816579
DLIIKGISV	9	Unmodified	_DLIIKGISV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.3022155761719	2	479.302593	956.590633	0.14512	6.9557E-05	-0.51462	-0.00024666	-0.3695	-0.0001771	479.3022945783064	73.266	1.1418	72.989	72.582	73.724	-0.2769					88	27	5	0	0	0	0.013924	5	8606	8572;8582;8594;8606;8619		167.23	38.628	1	13684000			7501	18221	4832	4848	9054;9055;9056;9057;9058	9057					0.11060101625480456
DLIIKGISV	9	Unmodified	_DLIIKGISV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.3023376464844	2	479.302593	956.590633	-0.40549	-0.00019435	0.0033696	1.6151E-06	-0.40212	-0.00019274	479.3025574250403	73.243	1.0921	72.978	72.595	73.687	-0.26479					88	26	5	0	0	0	0.016758	5	8615	8581;8591;8603;8615;8629		153.04	26.705	1	14600000			7502	18221	4832	4848	9059;9060;9061;9062;9063	9062					0.11060101625480456
DLIIKGISV	9	Unmodified	_DLIIKGISV_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP;ENSG00000120948|ENST00000240185|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.3020324707031	2	479.302593	956.590633	-0.20541	-9.8454E-05	-0.21368	-0.00010242	-0.41909	-0.00020087	479.3024740333337	73.055	1.0557	72.857	72.539	73.595	-0.1981					89	25	5	0	0	0	0.016542	5	8571	8547;8559;8571;8583;8595		154.12	43.998	1	13288000			7503	18221	4832	4848	9064;9065;9066;9067;9068	9066					0.11060101625480456
DLIIVRFKTL	10	Unmodified	_DLIIVRFKTL_					0	0	0			REV__ENST00000587125.1_1_17:58040633-58079710:-|nuORF	REV__ENST00000587125.1_1_17:58040633-58079710:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.73486328125	3	406.592058	1216.75434	0.024474	9.951E-06	-1.2644	-0.00051408	-1.2399	-0.00050412	406.5913338516388	22.542	0.3645	22.356	22.189	22.554	-0.18539					18	7	3	0	0	0	0.03519	1	790	790		3.6191	0	1	45899	+		7504	35622	4833	4849	9069	9069					0.15463699396377706
DLIIYFEP	8	Unmodified	_DLIIYFEP_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant;RYR1|p.S455C|1|0.25|ENSG00000196218|chr19:38452938-38452938|C/G|missense_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.78082275390625	2	505.265676	1008.5168	-0.65246	-0.00032967	-4.032	-0.0020372	-4.6844	-0.0023669	505.26475494599816	83.274	0.51144	83.3	82.831	83.342	0.02655					14	11	2	0	0	0	0.027866	1	10301	10301		73.975	15.193	1	38180			7505	9837	4834	4850	9070	9070					0.012881334631401842
DLIKFSTDL	9	Unmodified	_DLIKFSTDL_					0	0	0			REV__ENST00000591307.5_1_17:40972740-40975895:-|nuORF	REV__ENST00000591307.5_1_17:40972740-40975895:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.28759765625	2	526.28714	1050.55973	0.59574	0.00031353	-0.41949	-0.00022077	0.17625	9.2756E-05	526.2867151829394	74.378	1.0605	74.196	73.961	75.022	-0.18279					57	24	4	0	0	0	0.40693	1	8763	8763		65.465	5.1714	1	2462600	+		7506	22904	4835	4851	9071	9071					0.03646903520575506
DLIKLRCEI	9	Unmodified	_DLIKLRCEI_					0	0	0		ENST00000374826.8_3_2:190656656-190660567:+|nuORF	ENST00000374826.8_3_2:190656656-190660567:+|nuORF	ENST00000374826.8_3_2:190656656-190660567:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8179931640625	2	551.818084	1101.62162	-1.1222	-0.00061925	0.46219	0.00025505	-0.66	-0.0003642	551.8183606231418	39.207	1.3713	39.109	38.737	40.108	-0.098755					116	37	5	0	0	0	0.53979	1	3356	3356		56.721	0.28726	1	13865000			7507	13135	4836	4852	9072	9072					0.07486931668040597
DLILEPATL	9	Unmodified	_DLILEPATL_					0	0	0			REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2012023925781	2	492.784233	983.553913	-0.033285	-1.6402E-05	-2.8318	-0.0013955	-2.8651	-0.0014119	492.7831600660626	42.078	0.45113	41.847	41.614	42.065	-0.23029					17	12	2	0	0	0	0.024405	1	3760	3760		44.117	1.7207	1	183130	+		7508	23954	4837	4853	9073	9073					0.06147805008902196
DLILEPATL	9	Unmodified	_DLILEPATL_					0	0	0			REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.784233	983.553913	-0.33686	-0.000166	-0.60496	-0.00029812	-0.94182	-0.00046412	492.78354642160554	42.018	0.21687	41.786	41.62	41.837	-0.23186	-0.030865	0.001304	NaN	42.396	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116200	+		7509	23954	4837	4853							0.06147805008902196
DLIQANPK	8	Unmodified	_DLIQANPK_					0	0	0		nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2066955566406	2	449.753267	897.491981	0.51442	0.00023136	-0.2374	-0.00010677	0.27702	0.00012459	449.75299279391004	22.959	1.0041	22.757	22.314	23.318	-0.20193					34	21	2	0	0	0	0.027866	1	826	826		3.41	0	1	225250			7510	1784	4838	4854	9074	9074					0.039134983804160584
DLIQANPK	8	Unmodified	_DLIQANPK_					0	0	0		nc|ENSG00000085274|Q9NPC7-3|MYNN;nc|ENSG00000085274|Q9NPC7-2|MYNN;ENSG00000085274|ENST00000349841|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2066955566406	2	449.753267	897.491981	0.56961	0.00025618	-1.0325	-0.00046438	-0.46291	-0.00020819	449.75284942206446	22.476	0.60127	22.287	21.911	22.512	-0.18894					18	12	2	0	0	0	0.027866	1	826	826		3.41	0	1	53998			7511	1784	4838	4854	9075	9075					0.039134983804160584
DLIRLESID	9	Unmodified	_DLIRLESID_					0	0	0		ENSG00000137145|ENST00000434457|DENND4C;ENST00000494124.2_1_9:19316810-19337609:+|nuORF;ENST00000380437.8_1_9:19336661-19337609:+|nuORF	ENSG00000137145|ENST00000434457|DENND4C	ENSG00000137145|ENST00000434457|DENND4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.328125	2	537.295496	1072.57644	-1.4806	-0.00079553	-2.702	-0.0014518	-4.1827	-0.0022473	537.2936387399428	44.056	0.17699	43.912	43.781	43.958	-0.14471					7	4	2	0	0	0	0.024374	1	4132	4132		49.442	17.912	1	184930			7512	5092	4839	4855	9076	9076					0.04305404406500202
DLIRLYDII	9	Unmodified	_DLIRLYDII_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000588736.1_1_17:74041371-74044231:-|nuORF;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3298950195312	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	0.80003	1	11116	11116		39.253	5.0803	1	4298500			7513	7747	4840	4856	9077	9077					0.08819158199935373
DLISFLAW	8	Unmodified	_DLISFLAW_					0	0	0			REV__ENST00000503541.1_1_4:141446596-141446671:+|nuORF	REV__ENST00000503541.1_1_4:141446596-141446671:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7730712890625	2	482.760561	963.506569	-1.2942	-0.00062479	-2.7063	-0.0013065	-4.0005	-0.0019313	482.7590910663424	49.534	0.80529	49.608	49.242	50.047	0.074192					56	21	4	0	0	0	0.027866	1	5060	5060		33.516	0	1	1880000	+		7514	33958	4841	4857	9078	9078					0.023355705285553086
DLISKEPK	8	Unmodified	_DLISKEPK_					0	0	0		AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7607727050781	2	465.26875	928.522947	0.47403	0.00022055	0.79017	0.00036764	1.2642	0.00058819	465.2689998359604	86.041	0.6881	86.041	85.829	86.517	0					20	15	2	0	0	0	0.027866	1	10856	10856		29.15	7.1897	1	36102			7515	46	4842	4858	9079	9079					0.05582651694658125
DLITRLPK	8	Unmodified	_DLITRLPK_					0	0	0		ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2903137207031	2	478.300384	954.586216	0.41182	0.00019697	-0.67689	-0.00032376	-0.26507	-0.00012678	478.300124402668	67.974	1.491	67.686	67.148	68.639	-0.28834					101	37	5	0	0	0	0.027866	1	8143	8143		49.442	10.635	1	5022000			7516	2936	4843	4859	9080	9080					0.10710637202566886
DLITRLPK	8	Unmodified	_DLITRLPK_					0	0	0		ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2902526855469	2	478.300384	954.586216	0.35212	0.00016842	-0.62787	-0.00030031	-0.27575	-0.00013189	478.3001615408125	67.761	0.96904	67.78	67.345	68.314	0.018913					90	24	5	0	0	0	0.027866	1	8048	8048		51.335	3.4199	1	4606300			7517	2936	4843	4859	9081	9081					0.10710637202566886
DLITYDIPK	9	Unmodified	_DLITYDIPK_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.3090209960938	2	539.294965	1076.57538	-0.58514	-0.00031556	3.1813	0.0017157	2.5962	0.0014001	539.2966690490077	64.033	1.1757	63.782	63.408	64.584	-0.25141					38	31	2	0	0	0	0.024374	1	7585	7585		49.442	11.63	1	380600	+		7518	31349	4844	4860	9082	9082					0.040151900376031335
DLITYDIPK	9	Unmodified	_DLITYDIPK_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.294965	1076.57538	-0.49739	-0.00026824	3.5623	0.0019211	3.0649	0.0016529	539.7984073886969	63.964	0.3647	63.737	63.624	63.988	-0.22773	-0.030836	0.00096982	NaN	74.255	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81070	+		7519	31349	4844	4860							0.040151900376031335
DLITYDIPK	9	Unmodified	_DLITYDIPK_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.294965	1076.57538	-0.86937	-0.00046885	2.7505	0.0014834	1.8812	0.0010145	539.7982438293316	64.148	0.54044	63.889	63.495	64.035	-0.25824	0.12188	9.4269E-05	NaN	74.255	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117060	+		7520	31349	4844	4860							0.040151900376031335
DLIWRKVL	8	Unmodified	_DLIWRKVL_					0	0	0			REV__ENST00000301454.8_1_19:6441086-6441584:-|nuORF	REV__ENST00000301454.8_1_19:6441086-6441584:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3247680664062	2	521.824027	1041.6335	-1.4267	-0.0007445	3.322	0.0017335	1.8952	0.00098899	521.8257544676836	49.45	1.0972	49.524	48.95	50.047	0.074196					79	29	4	0	0	0	0.027866	1	5057	5057		73.975	5.49	1	3804500	+		7521	30058	4845	4861	9083	9083					0.11434916473558587
DLIYSSVL	8	Unmodified	_DLIYSSVL_					0	0	0			REV__chr2:127388311-127388881|507|11.47|0.0|20.13|+|1|MAP3K2-DT,MAP3K2-DT|1	REV__chr2:127388311-127388881|507|11.47|0.0|20.13|+|1|MAP3K2-DT,MAP3K2-DT|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2793273925781	2	455.250026	908.485499	-0.18379	-8.3672E-05	-2.3243	-0.0010582	-2.5081	-0.0011418	455.24873492177943	24.595	0.73873	24.42	24.169	24.907	-0.17484					19	16	2	0	0	0	0.027866	1	1061	1061		68.485	16.186	1	51083	+		7522	19404	4846	4862	9084	9084					0.027595604290468145
DLIYSSVL	8	Unmodified	_DLIYSSVL_					0	0	0			REV__chr2:127388311-127388881|507|11.47|0.0|20.13|+|1|MAP3K2-DT,MAP3K2-DT|1	REV__chr2:127388311-127388881|507|11.47|0.0|20.13|+|1|MAP3K2-DT,MAP3K2-DT|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	455.250026	908.485499	-0.99745	-0.00045409	-2.0765	-0.00094532	-3.0739	-0.0013994	455.2490791294786	24.545	0.3603	24.498	24.308	24.669	-0.047146	0.010628	0.00055291	NaN	68.485	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27085	+		7523	19404	4846	4862							0.027595604290468145
DLIYSSVL	8	Unmodified	_DLIYSSVL_					0	0	0			REV__chr2:127388311-127388881|507|11.47|0.0|20.13|+|1|MAP3K2-DT,MAP3K2-DT|1	REV__chr2:127388311-127388881|507|11.47|0.0|20.13|+|1|MAP3K2-DT,MAP3K2-DT|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	455.250026	908.485499	0.46074	0.00020975	-3.2368	-0.0014736	-2.7761	-0.0012638	455.2483560192555	24.415	0.36565	24.494	24.319	24.685	0.078344	0.0066832	-0.0005036	NaN	68.485	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30024	+		7524	19404	4846	4862							0.027595604290468145
DLKALWII	8	Unmodified	_DLKALWII_					0	0	0		ENST00000251636.9_1_5:54566241-54566439:-|nuORF	ENST00000251636.9_1_5:54566241-54566439:-|nuORF	ENST00000251636.9_1_5:54566241-54566439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.27984619140625	2	486.299853	970.585153	-0.26405	-0.00012841	-1.3873	-0.00067465	-1.6514	-0.00080305	486.2981975601646	50.756	0.27814	50.756	50.642	50.92	0					11	7	2	0	0	0	0.027866	1	5330	5330		38.806	5.9937	1	130130			7525	11355	4847	4863	9085	9085					0.09868422833653767
DLKATQAL	8	Unmodified	_DLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	430.2476501464844	2	430.247818	858.481082	-0.48338	-0.00020797	-0.27763	-0.00011945	-0.76101	-0.00032742	430.2476110969715	44.208	1.2633	44.103	43.78	45.043	-0.10468					98	33	6	0	0	0	0.11227	4	4099	4099;4109;4121;4133		157.21	32.614	1	11541000			7526	6905	4848	4864	9086;9087;9088;9089	9086					0.04618096006140604
DLKATQAL	8	Unmodified	_DLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.2475280761719	2	430.247818	858.481082	-0.61863	-0.00026617	0.0020754	8.9292E-07	-0.61656	-0.00026527	430.2477413162533	44.375	1.4363	44.13	43.829	45.266	-0.2444					99	38	5	0	0	0	0.24001	4	4120	4109;4120;4132;4143		133.81	23.475	1	10979000			7527	6905	4848	4864	9090;9091;9092;9093	9091					0.04618096006140604
DLKATQAL	8	Unmodified	_DLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.24737548828125	2	430.247818	858.481082	-0.65344	-0.00028114	0.25647	0.00011035	-0.39697	-0.0001708	430.24784674252953	44.333	1.2541	44.113	43.826	45.081	-0.21938					95	33	5	0	0	0	0.11227	5	4109	4098;4109;4120;4132;4147		157.21	37.652	1	9875100			7528	6905	4848	4864	9094;9095;9096;9097;9098	9095					0.04618096006140604
DLKATQAL	8	Unmodified	_DLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	430.247818	858.481082	-0.95673	-0.00041163	0.74064	0.00031866	-0.21609	-9.2972E-05	430.24809453456874	43.743	0.61562	43.743	43.44	44.056	0	-0.19859	0.00053281	NaN	157.21	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	634810			7529	6905	4848	4864							0.04618096006140604
DLKATQAL	8	Unmodified	_DLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	430.247818	858.481082	-0.87294	-0.00037558	0.62955	0.00027086	-0.24339	-0.00010472	430.24800492464215	43.869	0.56779	43.725	43.497	44.065	-0.14471	-0.2172	0.00043721	NaN	157.21	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550850			7530	6905	4848	4864							0.04618096006140604
DLKATQAL	8	Unmodified	_DLKATQAL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	430.247818	858.481082	0.2317	9.9687E-05	-0.49222	-0.00021178	-0.26052	-0.00011209	430.2475067953308	43.805	0.43634	43.835	43.593	44.029	0.030827	-0.10623	-0.00052806	NaN	157.21	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	705240			7531	6905	4848	4864							0.04618096006140604
DLKDAEAVQ	9	Unmodified	_DLKDAEAVQ_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.266357421875	2	494.750921	987.48729	-0.36096	-0.00017858	-0.46983	-0.00023245	-0.83079	-0.00041103	494.7504583400534	48.548	0.64168	48.615	48.228	48.87	0.066795					23	17	2	0	0	0	0.023007	1	4873	4873		87.754	13.499	1	130580			7532	8406	4849	4865	9099	9099					-0.006954305530030069
DLKDKGRKD	9	Unmodified	_DLKDKGRKD_					0	0	0			REV__ENST00000271324.5_1_1:111441941-111442178:+|nuORF	REV__ENST00000271324.5_1_1:111441941-111442178:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.8092041015625	2	537.798737	1073.58292	-0.27702	-0.00014898	-0.76634	-0.00041214	-1.0434	-0.00056111	537.7984027613363	31.925	0.38432	31.74	31.48	31.864	-0.18503					11	8	2	0	0	0	0.024313	1	2142	2142		42.864	5.0528	1	119760	+		7533	29801	4850	4866	9100	9100					0.04907342357910238
DLKEDLQKL	9	Unmodified	_DLKEDLQKL_					0	0	0		nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENST00000494224.1_1_1:118455281-118462980:-|nuORF;ENST00000493555.5_1_1:118439453-118462815:-|nuORF;ENSG00000196505|ENST00000369443|GDAP2	nc|ENSG00000196505|Q9NXN4-2|GDAP2	nc|ENSG00000196505|Q9NXN4-2|GDAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.7821655273438	2	551.311146	1100.60774	-0.090023	-4.9631E-05	-0.12802	-7.0576E-05	-0.21804	-0.00012021	551.3112700555563	45.543	0.47502	45.29	45.091	45.566	-0.25252					20	13	2	0	0	0	0.024405	1	4296	4296		35.618	0	1	271410			7534	18627	4851	4867	9101	9101					0.06145977440610295
DLKEHASSL	9	Unmodified	_DLKEHASSL_					0	0	0		ENST00000536573.6_1_12:1213918-1353789:+|nuORF;nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENSG00000187672|ENST00000288221|ERC2	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2586975097656	2	500.258914	998.503274	-0.20532	-0.00010271	-0.0096405	-4.8228E-06	-0.21496	-0.00010754	500.2587480774811	33.132	1.0927	32.901	32.221	33.314	-0.23107					62	26	4	0	0	0	0.020687	2	2332	2332;2347		148.99	44.24	1	1552600			7535	1741	4852	4868	9102;9103	9102					0.003962756839086978
DLKEHASSL	9	Unmodified	_DLKEHASSL_					0	0	0		ENST00000536573.6_1_12:1213918-1353789:+|nuORF;nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENSG00000187672|ENST00000288221|ERC2	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.2587890625	2	500.258914	998.503274	-0.13016	-6.5116E-05	-0.24186	-0.00012099	-0.37203	-0.00018611	500.258614099909	33.161	1.2675	32.96	32.449	33.717	-0.20019					63	31	4	0	0	0	0.03201	2	2346	2331;2346		139.97	35.224	1	1786300			7536	1741	4852	4868	9104;9105	9105					0.003962756839086978
DLKEHASSL	9	Unmodified	_DLKEHASSL_					0	0	0		ENST00000536573.6_1_12:1213918-1353789:+|nuORF;nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENSG00000187672|ENST00000288221|ERC2	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.2591247558594	2	500.258914	998.503274	-0.94013	-0.00047031	0.57189	0.00028609	-0.36824	-0.00018421	500.25910518125517	33.021	0.68164	32.855	32.597	33.278	-0.16565					46	16	5	0	0	0	0.28753	1	2316	2316		77.318	13.11	1	1606400			7537	1741	4852	4868	9106	9106					0.003962756839086978
DLKEKKEVV	9	Unmodified	_DLKEKKEVV_					0	0	0		nc|ENSG00000187514|P06454|PTMA;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF	nc|ENSG00000187514|P06454|PTMA	nc|ENSG00000187514|P06454|PTMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.3211669921875	2	544.321514	1086.62847	-0.45736	-0.00024895	-0.45678	-0.00024863	-0.91414	-0.00049758	544.3212797108174	24.532	1.6615	24.317	23.909	25.571	-0.21511					106	38	6	0	0	0	0.012922	5	1102	1070;1079;1091;1102;1117		209.84	99.248	1	12635000			7538	18604	4853	4869	9107;9108;9109;9110;9111	9110					0.08862567820278855
DLKEKKEVV	9	Unmodified	_DLKEKKEVV_					0	0	0		nc|ENSG00000187514|P06454|PTMA;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF	nc|ENSG00000187514|P06454|PTMA	nc|ENSG00000187514|P06454|PTMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3212890625	2	544.321514	1086.62847	-0.3434	-0.00018692	-0.31966	-0.000174	-0.66306	-0.00036092	544.3213458320213	24.322	1.3308	24.147	23.829	25.159	-0.17484					87	30	5	0	0	0	0.01388	4	1043	1031;1043;1054;1066		180.87	74.556	1	12072000			7539	18604	4853	4869	9112;9113;9114;9115	9113					0.08862567820278855
DLKEKKEVV	9	Unmodified	_DLKEKKEVV_					0	0	0		nc|ENSG00000187514|P06454|PTMA;ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF	nc|ENSG00000187514|P06454|PTMA	nc|ENSG00000187514|P06454|PTMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3213500976562	2	544.321514	1086.62847	1.4633	0.00079651	-2.167	-0.0011795	-0.70365	-0.00038301	544.3203777253534	24.4	1.335	24.219	23.938	25.273	-0.18089					92	30	6	0	0	0	0.01388	4	1053	1018;1029;1041;1053		195.06	88.056	1	11240000			7540	18604	4853	4869	9116;9117;9118;9119	9119					0.08862567820278855
DLKELKAYL	9	Unmodified	_DLKELKAYL_					0	0	0			REV__nc|ENSG00000183137|Q8IYX8-2|CEP57L1	REV__nc|ENSG00000183137|Q8IYX8-2|CEP57L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8184814453125	2	546.818607	1091.62266	-0.48313	-0.00026418	2.9384	0.0016068	2.4553	0.0013426	546.821116872408	64.405	1.0762	64.451	63.939	65.015	0.045502					79	28	5	0	0	0	0.70156	1	7517	7517		45.972	0	1	8562400	+		7541	27544	4854	4870	9120	9120					0.08051469308588821
DLKENLLKD	9	Unmodified	_DLKENLLKD_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3;ITGB3|p.M150*|1|0.33|ENSG00000259207|chr17:47284527-47284527|C/-|frameshift_variant	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8496704101562	2	544.303321	1086.59209	-0.16864	-9.1791E-05	1.4098	0.00076737	1.2412	0.00067558	544.3041029399601	77.094	0.3333	77.094	76.919	77.252	0					10	7	2	0	0	0	0.023835	1	9516	9516		61.691	10.499	1	208130			7542	10934	4855	4871	9121	9121					0.052256909235893545
DLKENLLKD	9	Unmodified	_DLKENLLKD_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3;ITGB3|p.M150*|1|0.33|ENSG00000259207|chr17:47284527-47284527|C/-|frameshift_variant	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.303321	1086.59209	-0.70231	-0.00038227	1.2728	0.00069278	0.57048	0.00031051	544.3040693659979	77.111	0.33928	77.124	76.978	77.317	0.013504	0.018047	-3.4283E-05	NaN	61.691	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203780			7543	10934	4855	4871							0.052256909235893545
DLKERLPSL	9	Unmodified	_DLKERLPSL_					0	0	0			REV__SMG7|p.E277D|1|0.37|ENSG00000116698|chr1:183529521-183529521|A/C|missense_variant	REV__SMG7|p.E277D|1|0.37|ENSG00000116698|chr1:183529521-183529521|A/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2379150390625	2	535.813856	1069.61316	-1.0915	-0.00058486	0.99454	0.00053289	-0.096999	-5.1974E-05	535.8140956993188	59.699	1.0404	59.784	59.54	60.58	0.085682					57	27	3	0	0	0	0.024263	1	6860	6860		51.335	0	1	1564000	+		7544	37517	4856	4872	9122	9122					0.08113701023103204
DLKERTVL	8	Unmodified	_DLKERTVL_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2875671386719	2	487.287474	972.560395	-1.255	-0.00061155	0.88578	0.00043163	-0.36924	-0.00017993	487.28782199279004	38.617	1.0433	38.438	38.17	39.213	-0.17929					59	28	4	0	0	0	0.78825	1	3214	3214		60.118	3.3972	1	5786000			7545	5465	4857	4873	9123	9123					0.0730174296027144
DLKERTVL	8	Unmodified	_DLKERTVL_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2871398925781	2	487.287474	972.560395	0.091122	4.4403E-05	-0.584	-0.00028458	-0.49288	-0.00024017	487.28711097165416	38.689	0.76622	38.463	38.143	38.909	-0.2257					53	20	4	0	0	0	0.36844	2	3185	3185;3195		101.6	16.685	1	5171100			7546	5465	4857	4873	9124;9125	9124					0.0730174296027144
DLKFKPTE	8	Unmodified	_DLKFKPTE_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.26861572265625	2	489.26875	976.522947	-0.23171	-0.00011337	-0.22409	-0.00010964	-0.4558	-0.00022301	489.268588081143	41.562	1.4594	41.334	40.966	42.426	-0.2278					93	38	4	0	0	0	0.6536	1	3675	3675		71.296	14.575	1	9281200	+		7547	27537	4858	4874	9126	9126					0.03374651694662134
DLKFKPTE	8	Unmodified	_DLKFKPTE_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2682800292969	2	489.26875	976.522947	-0.095309	-4.6632E-05	-0.53454	-0.00026154	-0.62985	-0.00030817	489.2684480785379	41.604	1.4395	41.374	41.003	42.442	-0.23029					81	38	3	0	0	0	0.62178	1	3669	3669		74.255	2.3776	1	10023000	+		7548	27537	4858	4874	9127	9127					0.03374651694662134
DLKGKPVAV	9	Unmodified	_DLKGKPVAV_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000486117.1_1_2:100048385-100055261:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.7872619628906	2	463.78711	925.559667	-0.085072	-3.9455E-05	-0.1365	-6.3306E-05	-0.22157	-0.00010276	463.7870443650934	33.569	0.64101	33.338	33.114	33.755	-0.23107					40	15	4	0	0	0	0.32811	1	2408	2408		71.877	23.962	1	1072200			7549	4957	4859	4875	9128	9128					0.09390948311227021
DLKGKPVAV	9	Unmodified	_DLKGKPVAV_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000486117.1_1_2:100048385-100055261:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.78711	925.559667	-0.37757	-0.00017511	0.40965	0.00018999	0.032075	1.4876E-05	463.7873474272343	33.575	0.69859	33.375	33.133	33.831	-0.20019	0.013806	0.00021767	NaN	71.877	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1015700			7550	4957	4859	4875							0.09390948311227021
DLKGKPVAV	9	Unmodified	_DLKGKPVAV_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000486117.1_1_2:100048385-100055261:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.78711	925.559667	-1.1585	-0.00053732	0.64313	0.00029828	-0.51542	-0.00023904	463.78755347978375	33.537	0.94319	33.371	33.117	34.06	-0.16565	0.0097198	0.00043424	NaN	71.877	41	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1053600			7551	4957	4859	4875							0.09390948311227021
DLKIRDQI	8	Unmodified	_DLKIRDQI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7929992675781	2	500.792924	999.571294	0.014314	7.1682E-06	-0.28256	-0.0001415	-0.26825	-0.00013434	500.79269802473954	51.856	0.88568	51.737	51.357	52.243	-0.11875					87	23	6	0	0	0	0.47665	1	5376	5376		87.754	10.437	1	10550000			7552	4485	4860	4876	9129	9129					0.07149145334562945
DLKITDVII	9	Unmodified	_DLKITDVII_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.271728515625	2	515.313158	1028.61176	-0.31459	-0.00016211	0.84115	0.00043345	0.52655	0.00027134	515.3133502163579	48.894	0.41658	48.894	48.724	49.141	0					17	11	2	0	0	0	0.024263	1	5013	5013		42.396	1.618	1	141440			7553	2185	4861	4877	9130	9130					0.098600669343341
DLKKAQGI	8	Unmodified	_DLKKAQGI_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.7637939453125	2	436.763635	871.512717	-0.5177	-0.00022611	0.7102	0.00031019	0.1925	8.4078E-05	436.76382837841277	27.091	0.89476	26.848	26.571	27.466	-0.24217					54	20	4	0	0	0	0.2917	1	1469	1469		115.46	9.0438	1	2563500			7554	8161	4862	4878	9131	9131					0.071820887600893
DLKKAQGI	8	Unmodified	_DLKKAQGI_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.763916015625	2	436.763635	871.512717	-0.30614	-0.00013371	0.57047	0.00024916	0.26434	0.00011545	436.7637826825393	26.882	0.98042	26.714	26.379	27.359	-0.16816					52	22	4	0	0	0	0.845	1	1422	1422		55.504	0.72789	1	2005400			7555	8161	4862	4878	9132	9132					0.071820887600893
DLKKIIDD	8	Unmodified	_DLKKIIDD_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.E1478K|1|0.16|ENSG00000039139|chr5:13864561-13864561|C/T|missense_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.297607421875	2	480.274032	958.533512	0.061953	2.9755E-05	1.0874	0.00052223	1.1493	0.00055199	480.27388778809666	49.527	0.44525	49.376	49.113	49.558	-0.1512					20	11	3	0	0	0	0.027866	1	5116	5116		56.721	15.943	1	201950			7556	1059	4863	4879	9133	9133					0.05258634349092972
DLKKIIDD	8	Unmodified	_DLKKIIDD_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.E1478K|1|0.16|ENSG00000039139|chr5:13864561-13864561|C/T|missense_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.274032	958.533512	0.90596	0.00043511	0.39629	0.00019033	1.3022	0.00062544	480.27351236578727	49.31	0.40062	49.31	49.072	49.473	0	-0.038502	-0.0010915	NaN	56.721	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187210			7557	1059	4863	4879							0.05258634349092972
DLKKIIDD	8	Unmodified	_DLKKIIDD_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.E1478K|1|0.16|ENSG00000039139|chr5:13864561-13864561|C/T|missense_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	480.274032	958.533512	-1.5257	-0.00073276	3.0888	0.0014835	1.5631	0.0007507	480.2747462026186	49.286	0.44313	49.36	49.022	49.465	0.074192	0.011367	0.0014947	NaN	56.721	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267720			7558	1059	4863	4879							0.05258634349092972
DLKKITNSL	9	Unmodified	_DLKKITNSL_					0	0	0		nc|ENSG00000104131|O75822-2|EIF3J;nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J;CTDSPL2-EIF3J|1|fusion	nc|ENSG00000104131|O75822-2|EIF3J	nc|ENSG00000104131|O75822-2|EIF3J	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.307373046875	2	516.308406	1030.60226	-0.52104	-0.00026902	-0.39848	-0.00020574	-0.91953	-0.00047476	516.3079790757638	46.604	0.73232	46.41	46.013	46.746	-0.19387					60	20	4	0	0	0	0.12914	1	4483	4483		104.06	21.816	1	1705100			7559	600	4864	4880	9134	9134					0.08818298648793643
DLKKMVIPD	9	Oxidation (M)	_DLKKM(Oxidation (M))VIPD_		DLKKM(1)VIPD		DLKKM(100)VIPD	0	0	1		ENST00000414386.5_1_6:41491948-41513865:-|nuORF	ENST00000414386.5_1_6:41491948-41513865:-|nuORF	ENST00000414386.5_1_6:41491948-41513865:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	537.7964477539062	2	537.796817	1073.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.1	1	86.124	85.624	86.624	0.023666								0	0	0	0.061278	1	10735	10735		104.06	26.739	1				7560	13861	4865	4881	9135	9135		496			0.04523536539818451
DLKLGPAIK	9	Unmodified	_DLKLGPAIK_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.7591552734375	2	477.80276	953.590967	-0.73022	-0.0003489	0.48854	0.00023343	-0.24168	-0.00011547	477.80285546185326	38.659	0.63748	38.438	38.119	38.757	-0.22149					32	16	3	0	0	0	0.024209	1	3181	3181		76.774	15.802	1	595350			7561	7173	4866	4882	9136	9136					0.11231521345314377
DLKLKEIQ	8	Unmodified	_DLKLKEIQ_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40;REV__nc|ENSG00000141519|Q4G0X9-4|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7747802734375	2	493.797675	985.580796	0.054602	2.6962E-05	-0.64108	-0.00031656	-0.58648	-0.0002896	493.7972046691187	49.818	0.65854	49.667	49.407	50.065	-0.1512					35	17	4	0	0	0	0.027866	1	5156	5156		96.19	5.4138	1	748920	+		7562	24099;36724	4867	4883	9137	9137					0.08742913620085346
DLKLVQLLF	9	Unmodified	_DLKLVQLLF_					0	0	0			REV__ENSG00000189132|ENST00000329357|FAM47B	REV__ENSG00000189132|ENST00000329357|FAM47B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.27685546875	2	544.839342	1087.66413	-0.98994	-0.00053936	0.54389	0.00029633	-0.44606	-0.00024303	544.8395128746427	72.817	0.58909	72.619	72.33	72.919	-0.1981					23	13	2	0	0	0	0.024261	1	8554	8554		45.972	0	1	683690	+		7563	28100	4868	4884	9138	9138					0.12380650067939314
DLKMLTNHT	9	Unmodified	_DLKMLTNHT_					0	0	0		ENST00000600584.5_1_19:4090598-4094708:-|nuORF;ENSG00000126934|ENST00000262948|MAP2K2	ENST00000600584.5_1_19:4090598-4094708:-|nuORF	ENST00000600584.5_1_19:4090598-4094708:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3046875	2	536.776416	1071.53828	-0.1826	-9.8016E-05	-0.98652	-0.00052954	-1.1691	-0.00062756	537.2757144810862	69.135	0.14644	68.842	68.714	68.86	-0.29267					5	3	2	0	0	0	0.024418	1	8275	8275		23.523	0	1	27472			7564	4222	4869	4885	9139	9139					0.00537195220204012
DLKNAKVI	8	Unmodified	_DLKNAKVI_					0	0	0			REV__ENST00000525616.1_1_19:50180537-50188241:+|nuORF;REV__nc|ENSG00000126457|Q99873-5|PRMT1	REV__nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.7792053222656	2	450.779285	899.544017	-0.62299	-0.00028083	0.39551	0.00017829	-0.22749	-0.00010255	450.779287593624	30.569	0.78777	30.391	30.124	30.912	-0.17817					43	18	4	0	0	0	0.35998	1	1959	1959		102.77	11.834	1	1396700	+		7565	34418;22895	4870	4886	9140	9140					0.09022661794188025
DLKPENLL	8	Unmodified	_DLKPENLL_					0	0	0		nc|ENSG00000148660|Q13555-9|CAMK2G;ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000148660|Q13555-6|CAMK2G;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000058404|Q13554-2|CAMK2B;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;ENSG00000070808|ENST00000671881|CAMK2A;RBM17-PRKACB|1|fusion;nc|ENSG00000070808|Q9UQM7|CAMK2A;ENSG00000152495|ENST00000282356|CAMK4;RBM17-PRKACB|2|fusion;BRSK1|p.R155G|1|0.32|ENSG00000160469|chr19:55294021-55294021|A/G|missense_variant;nc|ENSG00000130822|Q6P2M8-5|PNCK;ENSG00000159792|ENST00000291041|PSKH1;RBM17-PRKACB|3|fusion;CAMK2G|p.H134R|1|0.1|ENSG00000148660|chr10:73849274-73849274|T/C|missense_variant;ENSG00000142875|ENST00000370685|PRKACB;ENST00000523845.5_1_7:44260423-44302632:-|nuORF;nc|ENSG00000142875|P22694-4|PRKACB;ENST00000587533.1_1_19:14208485-14208734:-|nuORF;chr9:36581739-36589536|489|16.16|0.51|4.99|+|ENST00000627766|MELK,MELK;ENST00000505763.1_1_5:110693774-110785459:+|nuORF;ENST00000488994.5_1_X:152936878-152938531:-|nuORF;nc|ENSG00000130822|Q6P2M8-3|PNCK;ENST00000466638.5_1_X:152936878-152938301:-|nuORF;ENST00000397277.6_1_3:9799496-9807558:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;ENST00000466074.5_1_X:152935914-152937529:-|nuORF;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000130822|Q6P2M8-2|PNCK;ENSG00000134072|ENST00000256460|CAMK1;nc|ENSG00000072062|P17612-2|PRKACA;ENSG00000130822|ENST00000340888|PNCK;ENSG00000165059|ENST00000377276|PRKACG;ENSG00000072062|ENST00000308677|PRKACA;nc|ENSG00000142875|P22694|PRKACB;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;nc|ENSG00000130822|Q6P2M8-6|PNCK;ENST00000472912.5_1_10:75578585-75620616:-|nuORF;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000163673|ENST00000636136|DCLK3;ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5;ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1;ENST00000531078.1_1_11:1463684-1466535:+|nuORF;nc|ENSG00000160469|Q8TDC3-3|BRSK1;nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;ENSG00000112144|ENST00000676107|CILK1;nc|ENSG00000112144|Q9UPZ9-2|CILK1;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000008118|Q96NX5-2|CAMK1G;ENSG00000008118|ENST00000361322|CAMK1G;nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000089022|ENST00000550735|MAPKAPK5;ENSG00000160469|ENST00000309383|BRSK1;ENSG00000112144|ENST00000676107|CILK1;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000008118|Q96NX5-2|CAMK1G;nc|ENSG00000100784|O75582-3|RPS6KA5;nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.77667236328125	2	471.26875	940.522947	-0.69005	-0.0003252	1.4028	0.00066112	0.71279	0.00033592	471.269157705208	61.8	0.7501	61.622	61.329	62.079	-0.17782					27	18	2	0	0	0	0.027866	1	6926	6926		64.207	0	1	415520			7566	5808;3175;18371;1889;6818;7129;7396;833;2246;9192	4871	4887	9141	9141					0.0503065169467618
DLKPFSTGL	9	Unmodified	_DLKPFSTGL_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2684326171875	2	489.26875	976.522947	-0.095309	-4.6632E-05	-0.53454	-0.00026154	-0.62985	-0.00030817	489.2684480785379	41.604	1.4395	41.374	41.003	42.442	-0.23029					81	38	3	0	0	0	0.6238	1	3682	3682		51.193	1.6567	1	10023000	+		7567	23283	4872	4888	9142	9142					0.03374651694673503
DLKPRNIFL	9	Unmodified	_DLKPRNIFL_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000481134.1_1_3:142170107-142170575:+|nuORF	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.3323364257812	2	558.332216	1114.64988	0.18374	0.00010259	-0.49514	-0.00027645	-0.3114	-0.00017386	558.3318444181673	59.429	0.95211	59.18	58.847	59.8	-0.24841					65	23	4	0	0	0	0.17822	2	6552	6552;6575		93.195	8.2799	1	5001100			7568	1814	4873	4889	9143;9144	9143					0.0971399763966474
DLKQISTL	8	Unmodified	_DLKQISTL_					0	0	0		nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1;nc|ENSG00000014123|O94874-3|UFL1	nc|ENSG00000014123|O94874-2|UFL1	nc|ENSG00000014123|O94874-2|UFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2786560058594	2	459.26875	916.522947	0.16574	7.6121E-05	1.332	0.00061174	1.4977	0.00068786	459.269979664265	47.621	1.0009	47.468	46.858	47.858	-0.15301					42	28	2	0	0	0	0.027866	1	4720	4720		71.296	25.344	1	804860			7569	921	4874	4890	9145	9145					0.06134651694674176
DLKQKVENL	9	Unmodified	_DLKQKVENL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.811767578125	2	543.811313	1085.60807	-1.0481	-0.00056999	-0.11497	-6.2524E-05	-1.1631	-0.00063252	543.8112096698534	44.015	1.3038	43.911	43.363	44.667	-0.10468					83	34	5	0	0	0	0.014738	2	4085	4085;4112		163.15	8.4865	1	9210600			7570	10961	4875	4891	9146;9147	9146					0.06869397160471635
DLKQKVENL	9	Unmodified	_DLKQKVENL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8095092773438	2	543.811313	1085.60807	-1.1813	-0.00064241	0.049479	2.6907E-05	-1.1318	-0.0006155	543.8112982707287	44.225	1.2411	43.981	43.593	44.835	-0.2444					88	32	5	0	0	0	0.014738	3	4102	4091;4102;4116		163.15	21.631	1	9275500			7571	10961	4875	4891	9148;9149;9150	9149					0.06869397160471635
DLKRCKLA	8	Unmodified	_DLKRCKLA_					0	0	0		nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENSG00000167393|ENST00000390665|PPP2R3B;ENST00000477110.6_1_X:299337-302121:-|nuORF;ENST00000468169.6_1_X:299440-306311:-|nuORF	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.77850341796875	2	473.778762	945.542971	0.27668	0.00013108	-2.0152	-0.00095474	-1.7385	-0.00082366	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.78609	1	991	991		60.294	7.9948	1	5959600			7572	7683	4876	4892	9151	9151					0.06802124153625755
DLKRCKLA	8	Unmodified	_DLKRCKLA_					0	0	0		nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENSG00000167393|ENST00000390665|PPP2R3B;ENST00000477110.6_1_X:299337-302121:-|nuORF;ENST00000468169.6_1_X:299440-306311:-|nuORF	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	MSMS	OPSCC_39_ClassI_Rep-3	3	473.77862548828125	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.365	1	24.444	23.944	24.944	0.078344								0	0	0	0.57512	1	1006	1006		50.025	2.1089	1				7573	7683	4876	4892	9152	9152					0.06802124153625755
DLKRKAPQ	8	Unmodified	_DLKRKAPQ_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2458190917969	2	478.287808	954.561064	-1.486	-0.00071072	1.4365	0.00068704	-0.049499	-2.3675E-05	478.2882400504787	51.761	0.58861	51.492	51.242	51.831	-0.26903					21	15	2	0	0	0	0.027866	1	5293	5293		27.882	2.4321	1	762360	+		7574	19339	4877	4893	9153	9153					0.08196582399989438
DLKSFLRSV	9	Unmodified	_DLKSFLRSV_					0	0	0			REV__ENSG00000006831|ENST00000357103|ADIPOR2	REV__ENSG00000006831|ENST00000357103|ADIPOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.8092041015625	2	532.808574	1063.60259	-1.0669	-0.00056847	-1.3705	-0.00073019	-2.4374	-0.0012987	532.8077092719012	45.924	2.781	45.722	45.325	48.106	-0.20226					192	76	5	0	0	0	0.15388	1	4414	4414		98.582	5.4388	1	71155000	+		7575	19849	4878	4894	9154	9154					0.07333718368658992
DLKSMVQT	8	Unmodified	_DLKSMVQT_					0	0	0			REV__ENST00000581175.5_1_17:63133658-63206777:+|nuORF	REV__ENST00000581175.5_1_17:63133658-63206777:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2831115722656	2	461.239135	920.463718	-0.024956	-1.1511E-05	-3.378	-0.0015581	-3.403	-0.0015696	461.2379021753452	64.884	0.78035	64.922	64.44	65.221	0.037376					36	20	3	0	0	0	0.027866	1	7622	7622		23.523	10.069	1	317470	+		7576	35528	4879	4895	9155	9155					0.0003043240883471299
DLKSSKASL	9	Unmodified	_DLKSSKASL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.7710876464844	2	474.771657	947.528761	-0.32615	-0.00015485	-0.084729	-4.0227E-05	-0.41088	-0.00019508	474.7715729399414	29.258	0.92783	29.109	28.615	29.542	-0.14952					62	21	4	0	0	0	0.31105	1	1775	1775		74.165	5.3189	1	4123000			7577	4084	4880	4896	9156	9156					0.05289750206338795
DLKSVGMLL	9	Unmodified	_DLKSVGMLL_					0	0	0			REV__ENST00000388795.9_1_4:128886616-128922876:+|nuORF	REV__ENST00000388795.9_1_4:128886616-128922876:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2304382324219	2	488.280803	974.547053	-0.25406	-0.00012405	2.2116	0.0010799	1.9576	0.00095584	488.28234894740086	31.271	2.0523	31.086	30.117	32.169	-0.18503					84	49	3	0	0	0	0.024344	1	2082	2082		54.776	22.821	1	323560	+		7578	31562	4881	4897	9157	9157					0.0587616885669604
DLKTGLTN	8	Unmodified	_DLKTGLTN_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2662353515625	2	431.23745	860.460347	-0.34776	-0.00014997	1.0473	0.00045161	0.69949	0.00030165	431.2377731800151	48.781	0.36028	48.628	48.469	48.829	-0.15277					14	9	2	0	0	0	0.027866	1	4957	4957		36.447	7.2972	1	98561			7579	8503	4882	4898	9158	9158					0.024535056264653576
DLKTHIVSI	9	Unmodified	_DLKTHIVSI_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.3021850585938	2	513.303124	1024.5917	0.83378	0.00042798	-1.0341	-0.00053083	-0.20036	-0.00010284	513.3024871767237	51.378	0.64391	51.266	50.973	51.617	-0.11163					45	16	4	0	0	0	0.32811	1	5281	5281		71.877	15.156	1	1901000			7580	9887	4883	4899	9159	9159					0.0803831599437217
DLKTHIVSI	9	Unmodified	_DLKTHIVSI_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.3023681640625	2	513.303124	1024.5917	1.0759	0.00055225	-1.4128	-0.00072521	-0.33695	-0.00017296	513.3023066650434	51.487	0.57858	51.303	51.019	51.598	-0.18404					38	14	3	0	0	0	0.67244	1	5299	5299		47.96	7.1814	1	1374300			7581	9887	4883	4899	9160	9160					0.0803831599437217
DLKTKVLVL	9	Unmodified	_DLKTKVLVL_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8394165039062	2	514.839342	1027.66413	-0.67642	-0.00034825	0.19895	0.00010243	-0.47747	-0.00024582	514.839388077999	57.258	0.89933	57.091	56.786	57.686	-0.1672					86	23	5	0	0	0	0.053401	3	6240	6230;6240;6264		127.46	34.318	1	12877000			7582	8961	4884	4900	9161;9162;9163	9162					0.15140650067951356
DLKTKVLVL	9	Unmodified	_DLKTKVLVL_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.8389282226562	2	514.839342	1027.66413	0.223	0.00011481	-0.67473	-0.00034738	-0.45173	-0.00023257	514.8389510212749	57.324	0.95783	57.122	56.819	57.777	-0.20209					74	25	4	0	0	0	0.053401	4	6274	6240;6261;6274;6288		127.46	27.798	1	13377000			7583	8961	4884	4900	9164;9165;9166;9167	9166					0.15140650067951356
DLKTKVLVL	9	Unmodified	_DLKTKVLVL_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.8389282226562	2	514.839342	1027.66413	-0.39829	-0.00020506	-0.13492	-6.9463E-05	-0.53322	-0.00027452	514.8392398933679	57.414	0.89743	57.18	56.843	57.74	-0.23363					79	23	5	0	0	0	0.03201	5	6255	6234;6244;6255;6267;6294		139.97	24.476	1	13100000			7584	8961	4884	4900	9168;9169;9170;9171;9172	9170					0.15140650067951356
DLKVSKAEV	9	Unmodified	_DLKVSKAEV_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.P3423S|1|0.09|ENSG00000185567|chr14:104945184-104945184|G/A|missense_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.78656005859375	2	494.787307	987.560061	0.020928	1.0355E-05	-0.59709	-0.00029543	-0.57617	-0.00028508	494.78703127438985	19.419	0.9779	19.258	18.984	19.962	-0.16079					59	19	5	0	0	0	0.12914	1	413	413		104.06	4.6818	1	4279000			7585	9453	4885	4901	9173	9173					0.06578323240432837
DLKWSLVS	8	Unmodified	_DLKWSLVS_					0	0	0		nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;ENST00000534945.2_1_12:125834026-126068624:+|nuORF;nc|ENSG00000139364|Q14DG7-2|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.263427734375	2	474.263468	946.512382	-0.18339	-8.6977E-05	0.24117	0.00011438	0.05778	2.7403E-05	474.2634767071058	77.933	0.80727	77.772	77.527	78.334	-0.16196					56	18	4	0	0	0	0.47665	1	9283	9283		87.754	16.459	1	2001900			7586	5330	4886	4902	9174	9174					0.036986690402500244
DLLARIETL	9	Unmodified	_DLLARIETL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.3095703125	2	522.308406	1042.60226	-0.028043	-1.4647E-05	0.1725	9.0096E-05	0.14445	7.5449E-05	522.3082449114446	80.385	0.57648	80.147	79.874	80.45	-0.23784					29	13	3	0	0	0	0.025498	1	9628	9628		145.16	38.148	1	621510			7587	4961	4887	4903	9175	9175					0.08266298648823067
DLLARIETL	9	Unmodified	_DLLARIETL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.308406	1042.60226	0.44829	0.00023415	-0.64897	-0.00033896	-0.20068	-0.00010482	522.3078241263048	80.319	0.70506	80.113	79.843	80.548	-0.20633	-0.0074003	-0.00035331	NaN	145.16	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	524240			7588	4961	4887	4903							0.08266298648823067
DLLARIETL	9	Unmodified	_DLLARIETL_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.308406	1042.60226	0.11447	5.9789E-05	-0.29131	-0.00015216	-0.17684	-9.2366E-05	522.3080853218348	80.246	0.62257	80.1	79.828	80.45	-0.146	-0.019639	2.031E-05	NaN	145.16	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518230			7589	4961	4887	4903							0.08266298648823067
DLLATKRL	8	Unmodified	_DLLATKRL_					0	0	0		Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|27|1|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|27|1|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|27|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.3157958984375	2	465.292559	928.570566	-0.80217	-0.00037325	1.0018	0.00046612	0.1996	9.2874E-05	465.29283859290024	61.183	0.57128	60.929	60.774	61.346	-0.25373					29	13	3	0	0	0	0.027866	1	6847	6847		63.306	0	1	841440			7590	38071	4888	4904	9176	9176					0.10342350685516521
DLLEKSFSL	9	Unmodified	_DLLEKSFSL_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2869873046875	2	526.28714	1050.55973	-0.088588	-4.6623E-05	0.72422	0.00038115	0.63563	0.00033452	526.2871915588439	74.61	1.1814	74.334	74.001	75.183	-0.27573					79	27	5	0	0	0	0.041068	2	8780	8780;8791		132.76	36.567	1	3024900			7591	9771	4889	4905	9177;9178	9177					0.03646903520575506
DLLEKSFSL	9	Unmodified	_DLLEKSFSL_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.286865234375	2	526.28714	1050.55973	0.072296	3.8049E-05	0.29538	0.00015546	0.36768	0.00019351	526.2871300917677	74.562	1.1432	74.299	74.01	75.153	-0.26325					59	26	4	0	0	0	0.034407	3	8787	8787;8796;8809		138.06	49.885	1	2559700			7592	9771	4889	4905	9179;9180;9181	9179					0.03646903520575506
DLLEKSFSL	9	Unmodified	_DLLEKSFSL_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2880249023438	2	526.28714	1050.55973	0.59574	0.00031353	-0.41949	-0.00022077	0.17625	9.2756E-05	526.2867151829394	74.378	1.0605	74.196	73.961	75.022	-0.18279					57	24	4	0	0	0	0.030064	1	8752	8752		141.52	48.377	1	2462600			7593	9771	4889	4905	9182	9182					0.03646903520575506
DLLERMDI	8	Unmodified	_DLLERMDI_					0	0	0		ENST00000514262.5_1_5:52159827-52162958:+|nuORF;ITGA1|p.P513Lfs*28|1|0.09|ENSG00000213949|chr5:52908977-52908977|C/-|frameshift_variant;ENSG00000213949|ENST00000282588|ITGA1	ENST00000514262.5_1_5:52159827-52162958:+|nuORF;ENSG00000213949|ENST00000282588|ITGA1	ENST00000514262.5_1_5:52159827-52162958:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.80096435546875	2	502.757692	1003.50083	-0.04133	-2.0779E-05	0.32512	0.00016345	0.28379	0.00014268	502.75764038189755	46.038	0.733	46.038	45.714	46.447	0					30	20	2	0	0	0	0.027866	1	4585	4585		47.916	8.6628	1	670650			7594	15879;10530	4890	4906	9183	9183					-0.0007789604542267625
DLLERVGLW	9	Unmodified	_DLLERVGLW_					0	0	0			REV__ENST00000367807.7_2_1:169337295-169337499:+|nuORF	REV__ENST00000367807.7_2_1:169337295-169337499:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8063354492188	2	550.808574	1099.60259	-0.22396	-0.00012336	-3.9648	-0.0021838	-4.1887	-0.0023072	550.8062836715147	38.689	0.59441	38.463	38.177	38.771	-0.2257					45	15	4	0	0	0	0.096521	1	3210	3210		111.65	1.5284	1	2391600	+		7595	31031	4891	4907	9184	9184					0.05677718368656315
DLLFVALLL	9	Unmodified	_DLLFVALLL_					0	0	0			REV__nc|ENSG00000205336|Q9Y653-5|ADGRG1	REV__nc|ENSG00000205336|Q9Y653-5|ADGRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.75238037109375	2	508.823161	1015.63177	-0.91341	-0.00046476	-3.2866	-0.0016723	-4.2	-0.0021371	508.8214285748818	43.717	0.32194	43.572	43.388	43.71	-0.14471					20	8	3	0	0	0	0.024183	1	4084	4084		50.025	16.509	1	398320	+		7596	28674	4892	4908	9185	9185					0.12457862664939512
DLLFVFTL	8	Unmodified	_DLLFVFTL_					0	0	0		LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant;ENSG00000139679|ENST00000620633|LPAR6	LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	LPAR6|p.I145Sfs*41|1|0.27|ENSG00000139679|chr13:48411991-48411991|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.2757873535156	2	484.278586	966.54262	-0.22327	-0.00010812	-3.6794	-0.0017819	-3.9027	-0.00189	484.27663771437153	34.294	0.57602	34.087	33.75	34.326	-0.20696					38	14	4	0	0	0	0.59392	1	2523	2523		76.847	4.9692	1	2954800			7597	5357	4893	4909	9186	9186					0.05801027705433626
DLLGALKSQD	10	Unmodified	_DLLGALKSQD_					0	0	0			REV__nc|ENSG00000196482|P62508-4|ESRRG	REV__nc|ENSG00000196482|P62508-4|ESRRG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3052368164062	2	530.287671	1058.56079	-0.42572	-0.00022576	0.49036	0.00026003	0.06464	3.4278E-05	530.2883666693792	64.257	0.39613	64.03	63.866	64.263	-0.22774					19	9	3	0	0	0	0.03519	1	7279	7279		30.318	0	1	273980	+		7598	28187	4894	4910	9187	9187					0.03385117889479261
DLLGVKNKP	9	Unmodified	_DLLGVKNKP_					0	0	0			REV__ENSG00000166377|ENST00000426216|ATP9B	REV__ENSG00000166377|ENST00000426216|ATP9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2586975097656	2	492.297842	982.581131	0.060854	2.9958E-05	-0.98697	-0.00048588	-0.92612	-0.00045593	492.29722587028243	54.427	0.60669	54.182	53.98	54.586	-0.2453					32	17	2	0	0	0	0.024506	1	5749	5749		30.504	11.144	1	450910	+		7599	26008	4895	4911	9188	9188					0.08914333339942004
DLLGVKNKP	9	Unmodified	_DLLGVKNKP_					0	0	0			REV__ENSG00000166377|ENST00000426216|ATP9B	REV__ENSG00000166377|ENST00000426216|ATP9B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.297842	982.581131	-0.15365	-7.5642E-05	0.27184	0.00013383	0.11819	5.8186E-05	492.2978013224431	54.267	1.0312	54.267	53.726	54.757	0	0.024141	0.00051905	NaN	23.042	44	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154500	+		7600	26008	4895	4911							0.08914333339942004
DLLGVKNKP	9	Unmodified	_DLLGVKNKP_					0	0	0			REV__ENSG00000166377|ENST00000426216|ATP9B	REV__ENSG00000166377|ENST00000426216|ATP9B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.297842	982.581131	0.018388	9.0524E-06	0.22891	0.00011269	0.2473	0.00012175	492.2978020398254	54.381	1.0043	54.232	53.673	54.678	-0.14895	-0.010446	0.00047678	NaN	23.042	44	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	912560	+		7601	26008	4895	4911							0.08914333339942004
DLLGVKNKP	9	Unmodified	_DLLGVKNKP_					0	0	0			REV__ENSG00000166377|ENST00000426216|ATP9B	REV__ENSG00000166377|ENST00000426216|ATP9B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.297842	982.581131	0.3566	0.00017555	-1.0752	-0.00052933	-0.71862	-0.00035378	492.29765727146395	54.192	1.0653	54.29	53.631	54.696	0.098015	0.047406	-0.00080726	NaN	23.042	71	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002200	+		7602	26008	4895	4911							0.08914333339942004
DLLLICIVL	9	Unmodified	_DLLLICIVL_					0	0	0			REV__ENSG00000176742|ENST00000641270|OR51V1	REV__ENSG00000176742|ENST00000641270|OR51V1	MSMS	OPSCC_40_ClassI_Rep-1	4	507.81610107421875	2	507.817021	1013.61949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.26	1	102.13	101.63	102.63	-0.12931								0	0	0	0.59296	1	12695	12695		40.573	0	1		+		7603	27042	4896	4912	9189	9189					0.11322502930238443
DLLLINEVK	9	Unmodified	_DLLLINEVK_					0	0	0			REV__AAK1|p.H185L|1|0.13|ENSG00000115977|chr2:69532143-69532143|T/A|missense_variant	REV__AAK1|p.H185L|1|0.13|ENSG00000115977|chr2:69532143-69532143|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3220825195312	2	528.818607	1055.62266	0.4704	0.00024876	1.084	0.00057325	1.5544	0.00082201	528.8187812301243	70.314	1.4505	70.021	69.467	70.918	-0.29291					101	39	4	0	0	0	0.67687	1	8500	8500		47.657	1.7054	1	14037000	+		7604	19043	4897	4913	9190	9190					0.09707469308614236
DLLLLGESH	9	Unmodified	_DLLLLGESH_					0	0	0			REV__sp|P30118|HEPA_EBVB9DNAhelicase/primasecomplex-associatedproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBLF2/BBLF3PE=3SV=2	REV__sp|P30118|HEPA_EBVB9DNAhelicase/primasecomplex-associatedproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBLF2/BBLF3PE=3SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2928771972656	2	498.771657	995.528761	-0.11974	-5.9721E-05	0.54028	0.00026947	0.42054	0.00020975	498.77132827702354	47.558	0.89125	47.558	47.146	48.037	0					34	26	2	0	0	0	0.024381	1	4768	4768		37.159	0	1	161750	+		7605	37568	4898	4914	9191	9191					0.030817502063428037
DLLLPSQKL	9	Unmodified	_DLLLPSQKL_					0	0	0		ENST00000519338.1_1_8:82614932-82615299:-|nuORF	ENST00000519338.1_1_8:82614932-82615299:-|nuORF	ENST00000519338.1_1_8:82614932-82615299:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7994384765625	2	513.813325	1025.6121	-0.50658	-0.00026029	0.24046	0.00012355	-0.26611	-0.00013673	513.8148517157309	45.457	0.13124	45.245	45.153	45.284	-0.21109					5	3	2	0	0	0	0.024405	1	4294	4294		44.117	13.613	1	78674			7606	15950	4899	4915	9192	9192					0.10031486654179389
DLLLRLEP	8	Unmodified	_DLLLRLEP_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2;ENST00000483321.1_1_3:49166066-49166700:-|nuORF	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MSMS	OPSCC_40_ClassI_Rep-1	4	484.792236328125	2	484.792392	967.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.901	1	70.629	70.129	71.129	-0.27185								0	0	0	0.34583	1	8262	8262		90.37	0	1				7607	8233	4900	4916	9193	9193					0.08514930965657186
DLLLTVMDT	9	Unmodified	_DLLLTVMDT_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8123779296875	2	510.767726	1019.5209	-0.061921	-3.1627E-05	-2.4053	-0.0012286	-2.4672	-0.0012602	510.76583679926574	104.3	0.56976	104.3	104.03	104.6	-0.0032196					16	13	2	0	0	0	0.024381	1	13339	13339		29.15	0	1	129690	+		7608	24404	4901	4917	9194	9194					0.01191854894534572
DLLLWKKI	8	Unmodified	_DLLLWKKI_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7711791992188	2	514.828778	1027.643	-0.026267	-1.3523E-05	0.72472	0.0003731	0.69845	0.00035958	515.3299178140359	43.167	0.51128	43.198	42.974	43.486	0.030827					15	13	2	0	0	0	0.027866	1	4007	4007		38.806	0	1	322170			7609	3815	4902	4918	9195	9195					0.13028684759092357
DLLMVDTPN	9	Unmodified	_DLLMVDTPN_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7666320800781	2	509.2497	1016.48485	-0.2972	-0.00015135	1.2892	0.00065652	0.99199	0.00050517	509.2503336786634	65.736	1.1641	65.463	65.017	66.181	-0.27282					51	31	2	0	0	0	0.023181	1	7819	7819		60.972	15.02	1	212040	+		7610	23540	4903	4919	9196	9196					-0.022736022823210078
DLLPLFVCS	9	Unmodified	_DLLPLFVCS_					0	0	0		ENST00000417976.1_1:144300541-144300598:-|nuORF	ENST00000417976.1_1:144300541-144300598:-|nuORF	ENST00000417976.1_1:144300541-144300598:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.2907409667969	2	503.767529	1005.5205	-0.56393	-0.00028409	4.4239	0.0022286	3.86	0.0019445	503.7698604710845	55.05	0.46433	54.904	54.724	55.188	-0.14609					24	12	3	0	0	0	0.024381	1	5869	5869		29.15	0	1	215100			7611	13926	4904	4920	9197	9197					0.01796479965355502
DLLPRTPAY	9	Unmodified	_DLLPRTPAY_					0	0	0			REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF;REV__nc|ENSG00000143951|O95876-3|WDPCP	REV__nc|ENSG00000143951|O95876-3|WDPCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8390502929688	2	523.287474	1044.5604	0.056962	2.9808E-05	3.3439	0.0017498	3.4009	0.0017796	523.2892221409676	61.606	0.56462	61.379	61.047	61.611	-0.22663					23	14	2	0	0	0	0.024447	1	7051	7051		32.812	7.2384	1	182680	+		7612	31972;24300	4905	4921	9198	9198					0.03989742960266085
DLLQCVQLT	9	Unmodified	_DLLQCVQLT_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.7756958007812	2	516.773342	1031.53213	-1.1828	-0.00061126	2.3692	0.0012243	1.1864	0.00061309	516.7742805763476	25.039	0.80231	25.005	24.277	25.079	-0.034395					29	17	3	0	0	0	0.6504	1	1126	1126		49.442	7.0454	1	3157700			7613	3370	4906	4922	9199	9199					0.017626769886874172
DLLQDFIE	8	Unmodified	_DLLQDFIE_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2843017578125	2	496.75039	991.486227	-0.1551	-7.7044E-05	1.6854	0.0008372	1.5303	0.00076016	496.75173720823557	63.222	0.2037	63.001	62.858	63.062	-0.22097					5	4	2	0	0	0	0.027866	1	7119	7119		53.351	25.469	1	81880			7614	8113	4907	4923	9200	9200					-0.009856449219114438
DLLQDFIE	8	Unmodified	_DLLQDFIE_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.75039	991.486227	-0.37845	-0.00018799	3.6098	0.0017932	3.2314	0.0016052	496.7514422120899	62.957	0.47448	62.957	62.651	63.126	0	-0.0091136	0.00037266	NaN	53.351	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265180			7615	8113	4907	4923							-0.009856449219114438
DLLQDFIE	8	Unmodified	_DLLQDFIE_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.75039	991.486227	-0.34894	-0.00017333	3.9331	0.0019538	3.5842	0.0017805	496.7519135304291	63.179	0.47762	62.94	62.654	63.132	-0.23926	-0.026152	0.00069384	NaN	53.351	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177860			7616	8113	4907	4923							-0.009856449219114438
DLLQKHTL	8	Unmodified	_DLLQKHTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.2821350097656	2	484.282192	966.549831	-0.45359	-0.00021967	0.62775	0.00030401	0.17416	8.4342E-05	484.2823404415233	42.094	1.2976	41.863	41.508	42.806	-0.23186					64	34	3	0	0	0	0.38451	1	3745	3745		99.375	8.5983	1	2638200			7617	3431	4908	4924	9201	9201					0.06521760305861335
DLLQKHTL	8	Unmodified	_DLLQKHTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.2824401855469	2	484.282192	966.549831	0.072998	3.5352E-05	0.018782	9.0959E-06	0.09178	4.4447E-05	484.28203829295404	42.091	1.3204	41.861	41.508	42.829	-0.2303					67	35	3	0	0	0	0.47665	1	3739	3739		87.754	2.3948	1	2694000			7618	3431	4908	4924	9202	9202					0.06521760305861335
DLLQRLDAL	9	Unmodified	_DLLQRLDAL_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.8057250976562	2	528.806031	1055.59751	0.11493	6.0775E-05	-0.57865	-0.000306	-0.46373	-0.00024522	528.8056750340127	78.992	0.79923	78.738	78.471	79.27	-0.25471					41	18	4	0	0	0	0.12914	1	9431	9431		104.06	7.8664	1	816880			7619	7437	4909	4925	9203	9203					0.07193414506014051
DLLQRLDAL	9	Unmodified	_DLLQRLDAL_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.806031	1055.59751	-0.087057	-4.6036E-05	-0.32015	-0.0001693	-0.4072	-0.00021533	528.8058211458862	78.924	1.0503	78.692	78.389	79.439	-0.23141	-0.006432	0.00019012	NaN	104.06	49	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611180			7620	7437	4909	4925							0.07193414506014051
DLLQRLDAL	9	Unmodified	_DLLQRLDAL_					0	0	0		ENST00000378952.7_1_10:12209703-12222485:-|nuORF;ENSG00000165609|ENST00000491614|NUDT5	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.806031	1055.59751	0.13109	6.9322E-05	-0.58027	-0.00030685	-0.44918	-0.00023753	528.8056460767538	78.822	0.80576	78.666	78.383	79.189	-0.15591	-0.032391	-8.4985E-05	NaN	104.06	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	697270			7621	7437	4909	4925							0.07193414506014051
DLLRDNGL	8	Unmodified	_DLLRDNGL_					0	0	0		AADAC|p.D348N|1|0.14|ENSG00000114771|chr3:151828014-151828014|G/A|missense_variant	AADAC|p.D348N|1|0.14|ENSG00000114771|chr3:151828014-151828014|G/A|missense_variant	AADAC|p.D348N|1|0.14|ENSG00000114771|chr3:151828014-151828014|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.313232421875	2	458.248349	914.482145	-0.88755	-0.00040672	0.13392	6.137E-05	-0.75363	-0.00034535	458.24832089154955	44.799	0.54819	44.651	44.39	44.938	-0.1488					24	15	2	0	0	0	0.027866	1	4263	4263		23.042	1.0826	1	617030			7622	0	4910	4926	9204	9204					0.021483103750369992
DLLRKVGAL	9	Unmodified	_DLLRKVGAL_					0	0	0		ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1;nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1	ENSG00000072864|ENST00000396354|NDE1	ENSG00000072864|ENST00000396354|NDE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.81353759765625	2	492.813659	983.612765	-0.087743	-4.3241E-05	-0.11801	-5.8155E-05	-0.20575	-0.0001014	492.81344608141643	53.749	0.77324	53.504	53.237	54.01	-0.2453					57	23	4	0	0	0	0.26966	1	5653	5653		79.713	0.26157	1	4708200			7623	1494	4911	4927	9205	9205					0.12030326093884014
DLLRPLLPS	9	Unmodified	_DLLRPLLPS_					0	0	0			REV__ENST00000262424.9_1_16:84853614-84872070:+|nuORF	REV__ENST00000262424.9_1_16:84853614-84872070:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7843933105469	2	512.313492	1022.61243	0.53007	0.00027156	-1.0746	-0.00055053	-0.54452	-0.00027897	512.312683662367	58.981	1.0319	58.981	58.679	59.711	0					89	27	4	0	0	0	0.024021	1	6746	6746		58.782	19.976	1	2946500	+		7624	29662	4912	4928	9206	9206					0.10202906374036047
DLLSHKKTI	9	Unmodified	_DLLSHKKTI_					0	0	0		OR10K2|p.Q88H|1|0.17|ENSG00000180708|chr1:158420603-158420603|C/A|missense_variant	OR10K2|p.Q88H|1|0.17|ENSG00000180708|chr1:158420603-158420603|C/A|missense_variant	OR10K2|p.Q88H|1|0.17|ENSG00000180708|chr1:158420603-158420603|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7627563476562	2	527.816399	1053.61824	-0.39001	-0.00020586	-1.6211	-0.00085565	-2.0111	-0.0010615	527.8152559286304	62.477	0.47163	62.256	61.844	62.316	-0.22097					15	11	2	0	0	0	0.024541	1	7031	7031		17.365	0	1	523280			7625	18906	4913	4929	9207	9207					0.09358004885712035
DLLSQSCQY	9	Unmodified	_DLLSQSCQY_					0	0	0		ENST00000487532.5_1_1:45424435-45452248:-|nuORF	ENST00000487532.5_1_1:45424435-45452248:-|nuORF	ENST00000487532.5_1_1:45424435-45452248:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7377319335938	2	528.736957	1055.45936	-0.49908	-0.00026388	0.67056	0.00035455	0.17148	9.0669E-05	528.7370707123182	60.521	0.64497	60.315	60.05	60.695	-0.20599					35	15	3	0	0	0	0.37611	1	6752	6752		67.494	5.3863	1	1717700			7626	15368	4914	4930	9208	9208					-0.06615076804746423
DLLSQSCQY	9	Unmodified	_DLLSQSCQY_					0	0	0		ENST00000487532.5_1_1:45424435-45452248:-|nuORF	ENST00000487532.5_1_1:45424435-45452248:-|nuORF	ENST00000487532.5_1_1:45424435-45452248:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7363891601562	2	528.736957	1055.45936	-0.60032	-0.00031741	0.53199	0.00028128	-0.068332	-3.613E-05	528.7369790393645	60.626	0.68294	60.373	60.053	60.735	-0.25374					43	16	4	0	0	0	0.20967	1	6740	6740		87.754	5.4493	1	1499200			7627	15368	4914	4930	9209	9209					-0.06615076804746423
DLLSRAVM	8	Unmodified	_DLLSRAVM_					0	0	0			REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.76861572265625	2	452.74967	903.484787	-0.20902	-9.4632E-05	-4.3496	-0.0019693	-4.5586	-0.0020639	452.74824595295763	27.707	0.33601	27.551	27.349	27.685	-0.15664					10	7	2	0	0	0	0.027866	1	1509	1509		52.299	15.14	1	53453	+		7628	24977	4915	4931	9210	9210					0.02918442508348562
DLLSRTAV	8	Unmodified	_DLLSRTAV_					0	0	0		nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;ENST00000460505.5_1_3:49053023-49053570:-|nuORF;ENST00000498794.1_1_3:49053195-49053570:-|nuORF;ENST00000481001.5_1_3:49053078-49053570:-|nuORF;ENST00000498498.5_1_3:49053078-49053570:-|nuORF	nc|ENSG00000178149|Q5D0E6-4|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.7535705566406	2	437.753267	873.491981	-0.10599	-4.6397E-05	0.21824	9.5536E-05	0.11225	4.9139E-05	437.7533478347339	49.523	1.1749	49.422	49.068	50.243	-0.1008					91	30	5	0	0	0	0.29644	5	4984	4962;4973;4984;4996;5009		113.41	0	1	19023000			7629	8796	4916	4932	9211;9212;9213;9214;9215	9213					0.050174983804254225
DLLSRTAV	8	Unmodified	_DLLSRTAV_					0	0	0		nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;ENST00000460505.5_1_3:49053023-49053570:-|nuORF;ENST00000498794.1_1_3:49053195-49053570:-|nuORF;ENST00000481001.5_1_3:49053078-49053570:-|nuORF;ENST00000498498.5_1_3:49053078-49053570:-|nuORF	nc|ENSG00000178149|Q5D0E6-4|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.75323486328125	2	437.753267	873.491981	-0.0029491	-1.291E-06	0.13174	5.7672E-05	0.1288	5.6381E-05	437.7533157380422	49.796	1.0979	49.516	49.123	50.221	-0.27977					89	28	5	0	0	0	0.29644	4	4996	4996;5008;5019;5032		113.41	0	1	18359000			7630	8796	4916	4932	9216;9217;9218;9219	9216					0.050174983804254225
DLLSRTAV	8	Unmodified	_DLLSRTAV_					0	0	0		nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;ENST00000460505.5_1_3:49053023-49053570:-|nuORF;ENST00000498794.1_1_3:49053195-49053570:-|nuORF;ENST00000481001.5_1_3:49053078-49053570:-|nuORF;ENST00000498498.5_1_3:49053078-49053570:-|nuORF	nc|ENSG00000178149|Q5D0E6-4|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.75262451171875	2	437.753267	873.491981	0.72037	0.00031534	-0.68903	-0.00030162	0.031345	1.3721E-05	437.7529757956984	49.644	1.129	49.463	49.116	50.245	-0.18071					83	29	4	0	0	0	0.29644	5	4984	4973;4984;4995;5007;5020		113.41	0	1	17301000			7631	8796	4916	4932	9220;9221;9222;9223;9224	9221					0.050174983804254225
DLLTGSMEII	10	Unmodified	_DLLTGSMEII_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2;GPD2-NR4A2|1|fusion;NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3165893554688	2	546.286282	1090.55801	-0.80393	-0.00043918	0.19052	0.00010408	-0.61341	-0.0003351	546.2860858172598	89.592	0.54586	89.592	89.228	89.774	0					19	12	2	0	0	0	0.03519	1	11270	11270		29.15	0	1	239690			7632	6333	4917	4933	9225	9225					0.016355264403273395
DLLVEKVK	8	Unmodified	_DLLVEKVK_					0	0	0		nc|ENSG00000146535|Q03113-3|GNA12;nc|ENSG00000146535|Q03113-2|GNA12;ENSG00000146535|ENST00000275364|GNA12;ENST00000491117.5_1_7:2770817-2802736:-|nuORF	nc|ENSG00000146535|Q03113-3|GNA12	nc|ENSG00000146535|Q03113-3|GNA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.755859375	2	472.294768	942.574983	0.13051	6.1639E-05	-0.66092	-0.00031215	-0.53041	-0.00025051	472.2942995016599	42.768	0.38744	42.656	42.428	42.815	-0.11253					13	9	2	0	0	0	0.027866	1	3898	3898		57.811	0	1	119650			7633	5892	4918	4934	9226	9226					0.1013981510842541
DLLVLTHEP	9	Unmodified	_DLLVLTHEP_					0	0	0			REV__ENSG00000117226|ENST00000370481|GBP3;REV__ENSG00000162645|ENST00000370466|GBP2	REV__ENSG00000117226|ENST00000370481|GBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7815551757812	2	518.787307	1035.56006	-0.17627	-9.1449E-05	-0.86449	-0.00044849	-1.0408	-0.00053994	518.7869192550324	86.211	0.47691	86.166	85.99	86.466	-0.045105					14	10	2	0	0	0	0.024427	1	10793	10793		34.173	12.213	1	62371	+		7634	22334;25470	4919	4935	9227	9227					0.04370323240414109
DLLVPVILK	9	Unmodified	_DLLVPVILK_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3544006347656	2	505.336436	1008.65832	-0.78553	-0.00039696	-0.25886	-0.00013081	-1.0444	-0.00052777	505.33589682041867	90.49	0.29191	90.365	90.167	90.459	-0.12512					9	6	2	0	0	0	0.024436	1	11080	11080		30.504	10.022	1	25250	+		7635	20576	4920	4936	9228	9228					0.15433551556282055
DLLVQQYDK	9	Unmodified	_DLLVQQYDK_					0	0	0			REV__ENSG00000125875|ENST00000354200|TBC1D20	REV__ENSG00000125875|ENST00000354200|TBC1D20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2701416015625	2	561.295496	1120.57644	-1.2445	-0.00069854	0.74775	0.00041971	-0.49675	-0.00027883	561.2964248959739	26.157	0.087143	25.994	25.951	26.038	-0.16331					4	2	2	0	0	0	0.024397	1	1299	1299		24.519	4.5224	1	719710	+		7636	22857	4921	4937	9229	9229					0.020974044065042108
DLLWMFAF	8	Unmodified	_DLLWMFAF_					0	0	0			REV__nc|ENSG00000138463|Q96SL1-2|SLC49A4	REV__nc|ENSG00000138463|Q96SL1-2|SLC49A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.8029174804688	2	521.756964	1041.49937	-0.55344	-0.00028876	-0.97071	-0.00050647	-1.5242	-0.00079524	521.7561248304661	39.876	0.26805	39.727	39.591	39.859	-0.1497					11	6	2	0	0	0	0.027866	1	3391	3391		29.842	0	1	425830	+		7637	23859	4922	4938	9230	9230					-0.01971485343506174
DLLYCNIFF	9	Unmodified	_DLLYCNIFF_					0	0	0		Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|10|2|sense	Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|10|2|sense	Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|10|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.7625732421875	2	574.27826	1146.54197	-0.5972	-0.00034296	1.2571	0.00072194	0.65992	0.00037898	574.279015744088	72.733	0.59047	72.534	72.163	72.753	-0.1981					19	13	2	0	0	0	0.024323	1	8477	8477		35.618	0	1	53396			7638	38068	4923	4939	9231	9231					-0.02544135005928183
DLLYCNIFF	9	Unmodified	_DLLYCNIFF_					0	0	0		Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|10|2|sense	Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|10|2|sense	Tigger1_dup10712|chr17:1369700-1370119:-|1.1601934264460736|0.0417893780350381|4.8|510.0|10|2|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	574.27826	1146.54197	0.71575	0.00041104	-2.6305	-0.0015106	-1.9147	-0.0010996	574.2769614814487	72.874	0.24233	72.592	72.385	72.627	-0.28124	-0.011362	-0.00418	NaN	35.618	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84961			7639	38068	4923	4939							-0.02544135005928183
DLMIIVILI	9	Unmodified	_DLMIIVILI_					0	0	0			REV__ENSG00000112309|ENST00000230053|B3GAT2	REV__ENSG00000112309|ENST00000230053|B3GAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.297119140625	2	521.832672	1041.65079	-0.13742	-7.1709E-05	3.178	0.0016584	3.0406	0.0015867	521.8342478712694	52.886	0.41358	52.981	52.714	53.127	0.095669					22	10	3	0	0	0	0.024436	1	5582	5582		23.042	12.777	1	193760	+		7640	21993	4924	4940	9232	9232					0.13163075964371274
DLMLVVCLL	9	Unmodified	_DLMLVVCLL_					0	0	0		ENSG00000136404|ENST00000322019|TM6SF1;nc|ENSG00000136404|Q9BZW5-2|TM6SF1	ENSG00000136404|ENST00000322019|TM6SF1	ENSG00000136404|ENST00000322019|TM6SF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.8035888671875	2	509.787407	1017.56026	-0.039176	-1.9971E-05	2.7399	0.0013968	2.7007	0.0013768	510.2902751652838	87.077	0.42097	86.94	86.574	86.995	-0.13734					11	9	2	0	0	0	0.024325	1	10570	10570		31.955	0	1	70122			7641	5015	4925	4941	9233	9233					0.05218283644421717
DLNEKARAL	9	Unmodified	_DLNEKARAL_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2879638671875	2	515.288005	1028.56146	-0.12661	-6.5238E-05	-1.1275	-0.00058098	-1.2541	-0.00064622	515.287391484831	34.422	1.0953	34.198	33.883	34.979	-0.22412					75	27	4	0	0	0	0.015752	3	2531	2522;2531;2543		158.07	21.399	1	6843700			7642	3348	4926	4942	9234;9235;9236	9235					0.04831957329179204
DLNEKARAL	9	Unmodified	_DLNEKARAL_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2880249023438	2	515.288005	1028.56146	-0.16419	-8.4605E-05	-0.68695	-0.00035397	-0.85113	-0.00043858	515.2876455401987	34.346	1.2585	34.139	33.824	35.083	-0.20696					72	31	4	0	0	0	0.014034	2	2518	2508;2518		166.68	33.492	1	6499000			7643	3348	4926	4942	9237;9238	9238					0.04831957329179204
DLNEKARAL	9	Unmodified	_DLNEKARAL_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2886352539062	2	515.288005	1028.56146	-0.76727	-0.00039536	0.14008	7.218E-05	-0.62719	-0.00032318	515.2880765669939	34.323	1.0256	34.147	33.859	34.884	-0.17557					77	25	5	0	0	0	0.053401	2	2495	2495;2517		127.46	11.968	1	6594100			7644	3348	4926	4942	9239;9240	9239					0.04831957329179204
DLNELRKAV	9	Unmodified	_DLNELRKAV_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.276123046875	2	529.303655	1056.59276	-0.80024	-0.00042357	3.9905	0.0021122	3.1903	0.0016886	529.3053197974524	48.806	0.48741	48.806	48.585	49.072	0					18	11	2	0	0	0	0.024427	1	5041	5041		34.173	3.6689	1	190740			7645	7670	4927	4943	9241	9241					0.0667253036326656
DLNKAKLGM	9	Unmodified	_DLNKAKLGM_					0	0	0			REV__ENST00000558510.1_1_14:24711115-24711538:-|nuORF	REV__ENST00000558510.1_1_14:24711115-24711538:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2955322265625	2	495.276052	988.537551	-0.30298	-0.00015006	0.54451	0.00026968	0.24153	0.00011962	495.2762860077055	35.628	0.43054	35.415	35.154	35.584	-0.21246					20	10	2	0	0	0	0.024511	1	2695	2695		25.574	7.2496	1	369580	+		7646	35095	4928	4944	9242	9242					0.042824005711622704
DLNKEREN	8	Unmodified	_DLNKEREN_					0	0	0			REV__NDUFAF6|p.D157N|1|0.13|ENSG00000156170|chr8:95041618-95041618|G/A|missense_variant	REV__NDUFAF6|p.D157N|1|0.13|ENSG00000156170|chr8:95041618-95041618|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7665100097656	2	509.25162	1016.48869	-0.20399	-0.00010388	-2.5719	-0.0013097	-2.7758	-0.0014136	509.25027834948077	65.396	1.0853	65.433	65.081	66.166	0.037384					50	29	2	0	0	0	0.027866	1	7700	7700		68.787	0	1	199080	+		7647	37272	4929	4945	9243	9243					-0.018897964642405896
DLNKKTEV	8	Unmodified	_DLNKKTEV_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;USP8-MYEF2|1|fusion;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.76348876953125	2	473.763832	945.513111	-0.33077	-0.00015671	-0.021666	-1.0264E-05	-0.35244	-0.00016697	473.7637647990358	23.132	0.64179	22.952	22.559	23.201	-0.17989					35	13	4	0	0	0	0.47727	1	874	874		87.696	10.379	1	1714000			7648	18321	4930	4946	9244	9244					0.03817463689279066
DLNKRVQDL	9	Unmodified	_DLNKRVQDL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.8060302734375	2	550.806562	1099.59857	-1.2462	-0.00068639	0.93249	0.00051362	-0.31367	-0.00017277	550.8069424850445	38.625	0.7865	38.445	38.17	38.956	-0.17929					49	21	4	0	0	0	0.053401	1	3205	3205		127.46	28.087	1	2572400			7649	1773	4931	4947	9245	9245					0.052756288749378655
DLNKRVQDL	9	Unmodified	_DLNKRVQDL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8062133789062	2	550.806562	1099.59857	-0.73276	-0.00040361	0.37319	0.00020555	-0.35957	-0.00019806	550.8066639785604	38.659	0.73965	38.438	38.153	38.892	-0.22149					50	19	4	0	0	0	0.025498	1	3215	3215		145.16	28.252	1	2460300			7650	1773	4931	4947	9246	9246					0.052756288749378655
DLNLKRLY	8	Unmodified	_DLNLKRLY_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7692260742188	2	517.803291	1033.59203	-0.36758	-0.00019033	0.096559	4.9998E-05	-0.27102	-0.00014034	517.8033005080791	66.155	0.67323	65.914	65.665	66.338	-0.24145					24	16	2	0	0	0	0.027866	1	7564	7564		38.806	3.1879	1	319430	+		7651	22693	4932	4948	9247	9247					0.07657735714224145
DLNLTNAEF	9	Unmodified	_DLNLTNAEF_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7692260742188	2	518.750921	1035.48729	-0.42244	-0.00021914	-1.6438	-0.00085274	-2.0663	-0.0010719	518.7500403124121	66.569	0.70068	66.321	65.741	66.441	-0.24839					30	17	3	0	0	0	0.023842	1	7564	7564		58.23	10.573	1	243280			7652	9783	4933	4949	9248	9248					-0.029034305530103666
DLNMYKSEY	9	Unmodified	_DLNMYKSEY_					0	0	0		ENSG00000121318|ENST00000240619|TAS2R10	ENSG00000121318|ENST00000240619|TAS2R10	ENSG00000121318|ENST00000240619|TAS2R10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.723388671875	2	581.757889	1161.50123	-0.27889	-0.00016225	2.2366	0.0013011	1.9577	0.0011389	581.7589487237206	37.776	0.29725	37.597	37.404	37.701	-0.17929					13	7	2	0	0	0	0.023007	1	3047	3047		66.429	11.653	1	149450			7653	3865	4934	4950	9249	9249					-0.07306521116197473
DLNNFRTL	8	Unmodified	_DLNNFRTL_					0	0	0		nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2950744628906	2	496.761623	991.508694	0.47082	0.00023388	-0.55187	-0.00027415	-0.081056	-4.0265E-05	496.76110613874823	41.009	0.52976	41.009	40.728	41.258	0					25	14	2	0	0	0	0.027866	1	3673	3673		39.253	11.371	1	2059000			7654	5946	4935	4951	9250	9250					0.012599992663922421
DLNPSLQKT	9	Unmodified	_DLNPSLQKT_					0	0	0			REV__ENSG00000072422|ENST00000337910|RHOBTB1	REV__ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3159484863281	2	508.274564	1014.53457	-0.37503	-0.00019062	0.064028	3.2544E-05	-0.311	-0.00015807	508.274453902398	69.232	0.85373	69.232	68.938	69.791	0					38	21	2	0	0	0	0.024283	1	8303	8303		56.434	0	1	1790700	+		7655	20472	4936	4952	9251	9251					0.027888487180121047
DLNSIWAW	8	Unmodified	_DLNSIWAW_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000478916.5_1_6:152456172-152464916:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7644958496094	2	502.745442	1003.47633	-0.38638	-0.00019425	-0.18976	-9.5403E-05	-0.57614	-0.00028965	502.74491383650843	31.625	1.064	31.637	30.999	32.063	0.011797					34	25	2	0	0	0	0.027866	1	2123	2123		45.952	3.5558	1	79982			7656	4485	4938	4953	9252	9252					-0.02526788136617597
DLNTGVLII	9	Unmodified	_DLNTGVLII_					0	0	0			REV__RAC1|p.K116N|1|0.5|ENSG00000136238|chr7:6401927-6401927|A/C|missense_variant	REV__RAC1|p.K116N|1|0.5|ENSG00000136238|chr7:6401927-6401927|A/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.28466796875	2	479.2844	956.554247	0.35757	0.00017138	0.15027	7.2023E-05	0.50784	0.0002434	479.2842856885942	90.087	1.994	90.07	88.912	90.906	-0.016708					96	47	4	0	0	0	0.32811	1	11371	11371		71.877	0.58177	1	1691200	+		7657	37423	4939	4954	9253	9253					0.07423224728779587
DLNTVAAGTM	10	Unmodified	_DLNTVAAGTM_					0	0	0		ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000265354|ENST00000580018|TIMM23	ENSG00000204152|ENST00000651259|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.7417907714844	2	496.739499	991.464446	-0.88639	-0.0004403	4.342	0.0021569	3.4556	0.0017166	496.74154445995293	26.281	1.0328	26.045	25.843	26.876	-0.23603					68	27	3	0	0	0	1.0508	1	1339	1339		39.253	1.4413	1	5048200			7658	8812	4940	4955	9254	9254					-0.03162772942130232
DLNVKILDL	9	Unmodified	_DLNVKILDL_					0	0	0		ENST00000494139.1_1_13:24416692-24444322:-|nuORF;ENSG00000027001|ENST00000382172|MIPEP	ENST00000494139.1_1_13:24416692-24444322:-|nuORF	ENST00000494139.1_1_13:24416692-24444322:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8128051757812	2	521.810782	1041.60701	-0.33508	-0.00017485	4.428	0.0023106	4.0929	0.0021357	521.8130217566711	41.917	1.8968	41.917	41.579	43.475	0					149	53	4	0	0	0	0.86013	1	3857	3857		35.152	2.3396	1	7471500			7659	996	4941	4956	9255	9255					0.08787182791570558
DLNVRCES	8	Unmodified	_DLNVRCES_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.R234W|1|0.24|ENSG00000079999|chr19:10492202-10492202|G/A|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.71533203125	2	468.216192	934.41783	0.87175	0.00040817	0.15568	7.2893E-05	1.0274	0.00048106	468.21628005307326	25.822	0.91488	25.902	25.254	26.169	0.080088					33	21	3	0	0	0	0.027866	1	1211	1211		14.137	0	1	511370			7660	1680	4942	4957	9256	9256					-0.05200212773399926
DLNVRWVF	8	Unmodified	_DLNVRWVF_					0	0	0			REV__ENST00000462381.1_1_7:73151257-73151715:-|nuORF	REV__ENST00000462381.1_1_7:73151257-73151715:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8365478515625	2	524.782359	1047.55016	-0.85023	-0.00044618	3.1719	0.0016646	2.3217	0.0012184	524.7838533728319	60.837	0.677	60.623	60.31	60.987	-0.2134					31	17	2	0	0	0	0.027866	1	7002	7002		42.474	0	1	1742200	+		7661	21593	4943	4958	9257	9257					0.028291800257193245
DLNWNTWGM	9	Unmodified	_DLNWNTWGM_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.7451782226562	2	568.745116	1135.47568	-1.2134	-0.00069012	0.59617	0.00033907	-0.61725	-0.00035106	568.7453903779912	24.96	1.3959	24.925	24.591	25.987	-0.034395					74	32	3	0	0	0	0.85329	1	1145	1145		35.618	1.4457	1	2648100			7662	1930	4944	4959	9258	9258					-0.08663950847972046
DLNYPTRIT	9	Unmodified	_DLNYPTRIT_					0	0	0		TENM3|p.T2254N|1|0.16|ENSG00000218336|chr4:182793433-182793433|C/A|missense_variant	TENM3|p.T2254N|1|0.16|ENSG00000218336|chr4:182793433-182793433|C/A|missense_variant	TENM3|p.T2254N|1|0.16|ENSG00000218336|chr4:182793433-182793433|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.8116455078125	2	546.787838	1091.56112	-0.49576	-0.00027107	-0.53677	-0.0002935	-1.0325	-0.00056457	547.2887831197642	46.986	0.30434	46.986	46.772	47.076	0					12	7	2	0	0	0	0.024457	1	4660	4660		29.15	7.1897	1	201990			7663	38062	4945	4960	9259	9259					0.01900537609321873
DLPAISHS	8	Unmodified	_DLPAISHS_					0	0	0		ENST00000353159.6_2_9:33462250-33462577:-|nuORF	ENST00000353159.6_2_9:33462250-33462577:-|nuORF	ENST00000353159.6_2_9:33462250-33462577:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.2403259277344	2	420.216517	838.418482	2.1455	0.00090158	-0.39781	-0.00016717	1.7477	0.00073441	420.2172338708436	23.786	0.47789	23.595	23.36	23.838	-0.19117					11	10	2	0	0	0	0.027866	1	963	963		33.516	3.0119	1	27799			7664	12610	4946	4961	9260	9260					-0.007190500620367857
DLPAWASKTC	10	Unmodified	_DLPAWASKTC_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2655029296875	2	546.263142	1090.51173	-0.38931	-0.00021267	4.0017	0.002186	3.6123	0.0019733	546.265362993697	26.053	1.6161	25.885	25.7	27.317	-0.16816					110	41	4	0	0	0	1.0002	1	1314	1314		45.972	10.82	1	25118000	+		7665	27334	4947	4962	9261	9261					-0.02990493671131844
DLPDELVPN	9	Unmodified	_DLPDELVPN_					0	0	0		CREBBP|p.I45V|1|0.16|ENSG00000005339|chr16:3850962-3850962|T/C|missense_variant	CREBBP|p.I45V|1|0.16|ENSG00000005339|chr16:3850962-3850962|T/C|missense_variant	CREBBP|p.I45V|1|0.16|ENSG00000005339|chr16:3850962-3850962|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.25518798828125	2	506.253297	1010.49204	-0.04119	-2.0852E-05	-0.42142	-0.00021334	-0.46261	-0.0002342	506.2530025658316	61.463	0.7965	61.463	61.144	61.941	0					50	20	3	0	0	0	0.4752	1	7119	7119		60.972	6.1956	1	2981800			7666	586	4948	4963	9262	9262					-0.012785464102307742
DLPDRLLFG	9	Unmodified	_DLPDRLLFG_					0	0	0			REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7534790039062	2	523.287474	1044.5604	-0.14792	-7.7405E-05	-3.5681	-0.0018671	-3.716	-0.0019445	523.2857491694358	31.488	0.26811	31.303	31.172	31.44	-0.18503					10	5	3	0	0	0	0.024523	1	2101	2101		10.265	0	1	67161	+		7667	23440	4949	4964	9263	9263					0.039897429602888224
DLPDRLLFG	9	Unmodified	_DLPDRLLFG_					0	0	0			REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.287474	1044.5604	-0.40659	-0.00021277	-5.3715	-0.0028109	-5.7781	-0.0030236	523.2849474539835	31.535	0.18312	31.294	31.149	31.332	-0.24109	-0.0046212	-0.0011682	NaN	5.9211	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49962	+		7668	23440	4949	4964							0.039897429602888224
DLPEHAVL	8	Unmodified	_DLPEHAVL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.2403869628906	2	447.239993	892.465432	-0.41952	-0.00018763	-0.17843	-7.9801E-05	-0.59795	-0.00026743	447.23993290944435	54.411	1.9123	54.275	53.928	55.84	-0.13617					140	53	5	0	0	0	0.61897	2	5813	5756;5813		74.517	3.1387	1	35352000			7669	6327	4950	4965	9264;9265	9265					0.01489809489100935
DLPEHAVL	8	Unmodified	_DLPEHAVL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.24005126953125	2	447.239993	892.465432	-0.043021	-1.9241E-05	-0.52919	-0.00023667	-0.57221	-0.00025592	447.2397669443325	54.553	1.6237	54.308	53.98	55.604	-0.2453					126	46	5	0	0	0	0.65272	2	5781	5781;5793		71.378	11.084	1	33233000			7670	6327	4950	4965	9266;9267	9266					0.01489809489100935
DLPEHAVL	8	Unmodified	_DLPEHAVL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.2398376464844	2	447.239993	892.465432	0.73582	0.00032909	-1.168	-0.00052237	-0.43218	-0.00019329	447.23946512203395	54.505	1.7715	54.299	53.947	55.718	-0.20613					121	48	4	0	0	0	0.65272	1	5769	5769		71.378	4.9486	1	30226000			7671	6327	4950	4965	9268	9268					0.01489809489100935
DLPEKITIL	9	Unmodified	_DLPEKITIL_					0	0	0			REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.330078125	2	521.313158	1040.61176	0.51767	0.00026987	-0.37292	-0.00019441	0.14475	7.5462E-05	521.3128538873281	69.997	0.45249	69.705	69.467	69.92	-0.29291					17	10	2	0	0	0	0.023239	1	8429	8429		54.776	3.5836	1	167950	+		7672	36514	4951	4966	9269	9269					0.09308066934318049
DLPGQFTR	8	Unmodified	_DLPGQFTR_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2540283203125	2	467.243067	932.47158	-0.65413	-0.00030564	3.8934	0.0018192	3.2393	0.0015135	467.2447337578219	38.287	2.6101	38.314	38.023	40.633	0.027275					126	72	3	0	0	0	0.027866	1	3426	3426		40.778	10.275	1	738820			7673	956	4952	4967	9270	9270					0.0026432772060616117
DLPGSINVL	9	Unmodified	_DLPGSINVL_					0	0	0			REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	REV__KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.25634765625	2	464.260925	926.507297	-0.021785	-1.0114E-05	0.66656	0.00030946	0.64478	0.00029935	464.26102954526436	59.914	0.77444	59.714	59.318	60.093	-0.20016					41	20	3	0	0	0	0.024374	1	6773	6773		25.574	0	1	893390	+		7674	27687	4953	4968	9271	9271					0.04110365177609765
DLPIAVRIRID	11	Unmodified	_DLPIAVRIRID_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.8900146484375	2	640.887887	1279.76122	0.32967	0.00021128	3.0079	0.0019278	3.3376	0.002139	640.8897075718224	80.113	1.1476	80.113	79.87	81.017	0					60	27	3	0	0	0	0.96309	1	9965	9965		45.022	2.1579	1	1246800	+		7675	21681	4954	4969	9272	9272					0.13253012276936715
DLPIAVRIRID	11	Unmodified	_DLPIAVRIRID_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.8897094726562	2	640.887887	1279.76122	-0.0089672	-5.747E-06	3.2493	0.0020824	3.2403	0.0020767	640.8899002587254	80.288	1.2712	80.137	79.884	81.155	-0.15168					66	30	4	0	0	0	0.90172	1	9935	9935		51.528	5.071	1	1064900	+		7676	21681	4954	4969	9273	9273					0.13253012276936715
DLPKIIQLTEL	11	Unmodified	_DLPKIIQLTEL_					0	0	0			REV__ENSG00000142224|ENST00000659997|IL19	REV__ENSG00000142224|ENST00000659997|IL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.88232421875	2	641.884478	1281.7544	-2.5036	-0.001607	-0.82685	-0.00053074	-3.3304	-0.0021377	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	0.97926	1	11615	11615		41.427	6.2746	1	1400600	+		7677	19319	4955	4970	9274	9274					0.12479654605704127
DLPLEEETL	9	Unmodified	_DLPLEEETL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.3092041015625	2	529.766237	1057.51792	-0.88382	-0.00046822	-2.6298	-0.0013932	-3.5136	-0.0018614	529.7651511849734	29.447	0.3951	29.451	29.276	29.672	0.0031376					23	9	4	0	0	0	0.024323	1	1780	1780		35.618	8.571	1	114930			7678	9931	4956	4971	9275	9275					-0.008536969585975385
DLPLEEETL	9	Unmodified	_DLPLEEETL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.310302734375	2	529.766237	1057.51792	-0.32695	-0.00017321	-0.95049	-0.00050354	-1.2774	-0.00067674	529.7657145388365	29.055	0.38475	29.133	28.942	29.327	0.078346					16	9	2	0	0	0	0.024381	1	1694	1694		45.952	14.318	1	108330			7679	9931	4956	4971	9276	9276					-0.008536969585975385
DLPLKTKVL	9	Unmodified	_DLPLKTKVL_					0	0	0		ENSG00000174130|ENST00000508254|TLR6;nc|ENSG00000174130|Q9Y2C9-2|TLR6	ENSG00000174130|ENST00000508254|TLR6	ENSG00000174130|ENST00000508254|TLR6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8316040039062	2	513.831517	1025.64848	-0.36675	-0.00018845	0.051866	2.665E-05	-0.31489	-0.0001618	513.8315025354901	67.292	1.0957	67.292	66.968	68.064	0					85	27	5	0	0	0	0.74711	1	8009	8009		42.864	0.46813	1	6089300			7680	8443	4957	4972	9277	9277					0.13668363550914364
DLPLVKLDFS	10	Unmodified	_DLPLVKLDFS_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.8240966796875	2	573.823889	1145.63323	0.33583	0.0001927	-0.08701	-4.9929E-05	0.24882	0.00014278	573.8237534145502	105.28	0.20338	105.11	105.02	105.22	-0.16485					12	6	3	0	0	0	1.1307	1	13094	13094		26.693	0	1	150170			7681	4399	4958	4973	9278	9278					0.06623451963037041
DLPNPIIVD	9	Unmodified	_DLPNPIIVD_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2953796386719	2	498.274032	994.533512	-0.011217	-5.589E-06	4.4404	0.0022126	4.4292	0.002207	498.2758780478259	41.046	0.52748	41.069	40.83	41.358	0.023006					32	14	3	0	0	0	0.024319	1	3648	3648		31.53	0	1	291810	+		7682	22371	4959	4974	9279	9279					0.03602634349101663
DLPQKKKT	8	Unmodified	_DLPQKKKT_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.73590087890625	2	479.290017	956.565481	0.71629	0.00034331	-0.51783	-0.00024819	0.19846	9.512E-05	479.2897512161816	60.145	1.0033	60.145	59.88	60.884	0					58	26	3	0	0	0	0.027866	1	6891	6891		26.693	0	1	1172700	+		7683	20674	4960	4975	9280	9280					0.0854604682289164
DLPQNEIKNFE	11	Unmodified	_DLPQNEIKNFE_					0	0	0		nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1;nc|ENSG00000164304|Q8TC20-4|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1	nc|ENSG00000164304|Q8TC20-3|CAGE1	nc|ENSG00000164304|Q8TC20-3|CAGE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26904296875	3	449.557741	1345.6514	-1.3166	-0.00059189	2.5231	0.0011343	1.2064	0.00054237	449.55882907235	38.643	0.56781	38.67	38.429	38.997	0.027275					27	14	2	0	0	0	0.024726	1	3174	3174		25.892	0	1	295460			7684	7255	4961	4976	9281	9281					-0.007604578529253558
DLPQNFKIF	9	Unmodified	_DLPQNFKIF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3236694335938	2	561.303124	1120.5917	0.78342	0.00043974	0.88535	0.00049695	1.6688	0.00093669	561.3034245012939	67.847	0.58247	67.592	67.279	67.862	-0.25516					18	11	2	0	0	0	0.024323	1	7856	7856		44.117	0	1	178930			7685	918	4962	4977	9282	9282					0.036223159943801875
DLPRIFRVTT	10	Unmodified	_DLPRIFRVTT_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	608.3856811523438	2	609.35368	1216.69281	-0.21106	-0.00012861	4.2507	0.0025902	4.0396	0.0024616	609.3568067775444	97.485	1.1255	97.485	97.058	98.184	-0.00023651					35	25	2	0	0	0	0.03519	1	12426	12426		31.53	4.4825	1	200200			7686	8130	4963	4978	9283	9283					0.0931276769708802
DLPRQAPG	8	Unmodified	_DLPRQAPG_					0	0	0		ENST00000485245.2_1_2:98377202-98377406:-|nuORF	ENST00000485245.2_1_2:98377202-98377406:-|nuORF	ENST00000485245.2_1_2:98377202-98377406:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2537841796875	2	427.229959	852.445365	-0.49576	-0.0002118	0.37552	0.00016044	-0.12023	-5.1368E-05	427.2298659045339	23.284	0.54845	23.224	22.798	23.347	-0.060862					20	12	2	0	0	0	0.027866	1	871	871		50.025	11.218	1	95829			7687	15324	4964	4979	9284	9284					0.013240585491416823
DLPRQAPG	8	Unmodified	_DLPRQAPG_					0	0	0		ENST00000485245.2_1_2:98377202-98377406:-|nuORF	ENST00000485245.2_1_2:98377202-98377406:-|nuORF	ENST00000485245.2_1_2:98377202-98377406:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	427.229959	852.445365	0.055455	2.3692E-05	0.030141	1.2877E-05	0.085596	3.6569E-05	427.23014220043285	23.71	0.43207	23.53	23.436	23.868	-0.17989	0.092295	0.00040311	NaN	50.025	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38048			7688	15324	4964	4979							0.013240585491416823
DLPRQAPG	8	Unmodified	_DLPRQAPG_					0	0	0		ENST00000485245.2_1_2:98377202-98377406:-|nuORF	ENST00000485245.2_1_2:98377202-98377406:-|nuORF	ENST00000485245.2_1_2:98377202-98377406:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.229959	852.445365	2.2017	0.00094064	-2.075	-0.0008865	0.12672	5.414E-05	427.22858200758253	23.751	0.43351	23.56	23.36	23.794	-0.19117	0.12193	-0.0013956	NaN	50.025	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36095			7689	15324	4964	4979							0.013240585491416823
DLPSEWYL	8	Unmodified	_DLPSEWYL_					0	0	0		nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1	nc|ENSG00000146453|Q8NA58|PNLDC1	nc|ENSG00000146453|Q8NA58|PNLDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.81817626953125	2	511.745108	1021.47566	0.14954	7.6528E-05	0.51501	0.00026355	0.66455	0.00034008	511.74484628686463	74.387	0.39483	74.124	73.966	74.361	-0.26326					13	8	2	0	0	0	0.027866	1	8756	8756		37.028	1.8278	1	107860			7690	5886	4965	4980	9285	9285					-0.03421627576335595
DLPSPCPLFE	10	Unmodified	_DLPSPCPLFE_					0	0	0		ENST00000422956.6_1_2:114016893-114020997:+|nuORF	ENST00000422956.6_1_2:114016893-114020997:+|nuORF	ENST00000422956.6_1_2:114016893-114020997:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.814453125	2	559.26535	1116.51615	0.26411	0.00014771	0.14946	8.3587E-05	0.41357	0.00023129	559.2649824953072	80.386	1.2714	80.179	79.969	81.241	-0.20633					65	30	4	0	0	0	0.03519	1	9791	9791		42.396	0	1	804160			7691	14017	4966	4981	9286	9286					-0.037450292482162695
DLPSQGKKNR	10	Unmodified	_DLPSQGKKNR_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.8176879882812	2	571.817461	1141.62037	-0.24717	-0.00014134	0.022438	1.283E-05	-0.22473	-0.00012851	571.8173923714517	19.738	0.71766	19.619	19.348	20.066	-0.11872					36	14	4	0	0	0	0.98527	1	431	431		47.96	0.30219	1	306540	+		7692	21255	4967	4982	9287	9287					0.055224336235369265
DLPVVKKNIK	10	Unmodified	_DLPVVKKNIK_					0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2	REV__ENSG00000122512|ENST00000265849|PMS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	577.3665771484375	2	577.368798	1152.72304	-1.0688	-0.00061712	-2.9126	-0.0016817	-3.9815	-0.0022988	577.3670156537873	101.16	0.99826	101.16	100.82	101.82	0					57	22	4	0	0	0	1.089	1	12957	12957		34.173	5.0025	1	1213500	+		7693	22649	4968	4983	9288	9288					0.1527912636227029
DLPVVKKNIK	10	Unmodified	_DLPVVKKNIK_					0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2	REV__ENSG00000122512|ENST00000265849|PMS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.3667602539062	2	577.368798	1152.72304	-0.32694	-0.00018876	-3.4688	-0.0020028	-3.7958	-0.0021916	577.3666744516432	101.1	0.73207	101.11	100.83	101.56	0.0090332					51	16	4	0	0	0	1.1088	1	12891	12891		31.53	8.0071	1	1370400	+		7694	22649	4968	4983	9289	9289					0.1527912636227029
DLQARITSL	9	Unmodified	_DLQARITSL_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.79010009765625	2	508.790381	1015.56621	-0.25047	-0.00012743	0.12051	6.1312E-05	-0.12996	-6.6123E-05	508.79033427126706	60.805	0.75398	60.599	60.421	61.175	-0.20599					35	18	2	0	0	0	0.16539	1	6783	6783		96.034	8.3372	1	2191900			7695	1373	4969	4984	9290	9290					0.059048414719427456
DLQARITSL	9	Unmodified	_DLQARITSL_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.7903747558594	2	508.790381	1015.56621	-1.0978	-0.00055856	0.84398	0.00042941	-0.25384	-0.00012915	508.7907233047651	60.715	0.67521	60.539	60.322	60.997	-0.1761					34	16	3	0	0	0	0.1764	1	6774	6774		93.598	8.6821	1	2506900			7696	1373	4969	4984	9291	9291					0.059048414719427456
DLQARITSL	9	Unmodified	_DLQARITSL_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.790283203125	2	508.790381	1015.56621	-0.93247	-0.00047443	0.68953	0.00035083	-0.24294	-0.00012361	508.7906389584959	60.918	0.71545	60.664	60.421	61.137	-0.25373					37	17	4	0	0	0	0.29609	2	6783	6783;6795		76.17	7.3829	1	2154400			7697	1373	4969	4984	9292;9293	9292					0.059048414719427456
DLQDLCPRAV	10	Unmodified	_DLQDLCPRAV_					0	0	0		ENST00000313431.13_2_1:144931535-144931775:-|nuORF	ENST00000313431.13_2_1:144931535-144931775:-|nuORF	ENST00000313431.13_2_1:144931535-144931775:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.3427124023438	2	565.287148	1128.55974	-0.79029	-0.00044674	0.45377	0.00025651	-0.33652	-0.00019023	565.2871906258799	45.963	0.47961	46.014	45.794	46.274	0.051399					22	13	2	0	0	0	0.03519	1	4489	4489		39.253	27.046	1	242460			7698	12101	4970	4985	9294	9294					0.0006058024891899549
DLQKGLLI	8	Unmodified	_DLQKGLLI_					0	0	0			REV__ENST00000266085.6_1_22:33257961-33258000:+|nuORF	REV__ENST00000266085.6_1_22:33257961-33258000:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.77313232421875	2	450.28166	898.548768	0.21387	9.6303E-05	-0.028317	-1.2751E-05	0.18556	8.3552E-05	450.2814640240252	78.807	1.0812	78.615	78.298	79.379	-0.1921					55	25	3	0	0	0	0.027866	1	9786	9786		35.201	0	1	682820	+		7699	29759	4971	4986	9295	9295					0.09543545936958253
DLQKRKEN	8	Unmodified	_DLQKRKEN_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27;REV__nc|ENSG00000165115|Q86VH2-4|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8028564453125	2	515.78563	1029.55671	0.19415	0.00010014	4.204	0.0021683	4.3981	0.0022685	515.7877745120468	59.69	0.87001	59.441	58.93	59.8	-0.24842					54	21	4	0	0	0	0.027866	1	6612	6612		27.882	0	1	2438900	+		7700	25841;36871	4972	4987	9296	9296					0.04311073186431713
DLQKRKEN	8	Unmodified	_DLQKRKEN_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27;REV__nc|ENSG00000165115|Q86VH2-4|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.78563	1029.55671	-0.17497	-9.0248E-05	8.9095	0.0045954	8.7346	0.0045052	516.2908433138246	59.085	0.43069	59.171	58.921	59.351	0.085682	-0.19562	0.0050178	NaN	27.882	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69158	+		7701	25841;36871	4972	4987							0.04311073186431713
DLQLDRISV	9	Unmodified	_DLQLDRISV_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7958984375	2	529.795663	1057.57677	-0.44902	-0.00023789	-0.025749	-1.3642E-05	-0.47477	-0.00025153	529.7956054961212	63.282	1.2297	63.031	62.683	63.912	-0.25141					82	32	3	0	0	0	0.30449	1	7341	7341		75.043	3.7476	1	11344000			7702	9840	4973	4988	9297	9297					0.05028824126384279
DLQLSSKIL	9	Unmodified	_DLQLSSKIL_					0	0	0			REV__ENSG00000153317|ENST00000518721|ASAP1	REV__ENSG00000153317|ENST00000518721|ASAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8003845214844	2	508.802957	1015.59136	0.6424	0.00032686	-3.4224	-0.0017413	-2.78	-0.0014145	509.3033126215032	59.197	1.4438	59.197	58.193	59.637	0					74	38	4	0	0	0	0.024484	1	6797	6797		30.318	6.115	1	2647000	+		7703	24900	4974	4989	9298	9298					0.08418896274520193
DLQLWLFL	8	Unmodified	_DLQLWLFL_					0	0	0			REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2969970703125	2	524.29731	1046.58007	-1.0531	-0.00055216	1.3826	0.00072491	0.3295	0.00017276	524.297968411829	103.06	1.2007	103.06	102.65	103.85	0					86	29	4	0	0	0	0.24001	2	13227	13227;13239		133.81	0	1	4462700	+		7704	37106	4975	4990	9299;9300	9299					0.05864118971044263
DLQLWLFL	8	Unmodified	_DLQLWLFL_					0	0	0			REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2967529296875	2	524.29731	1046.58007	-0.2623	-0.00013752	0.68057	0.00035682	0.41827	0.0002193	524.2975724524634	103.03	1.0612	103.03	102.67	103.73	0.0054169					80	26	4	0	0	0	0.24207	2	13191	13191;13206		133.47	0	1	4374000	+		7705	37106	4975	4990	9301;9302	9301					0.05864118971044263
DLQLWLFL	8	Unmodified	_DLQLWLFL_					0	0	0			REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2960205078125	2	524.29731	1046.58007	0.21581	0.00011315	0.076836	4.0285E-05	0.29265	0.00015344	524.2972521633124	103.11	1.6176	103.1	102.68	104.29	-0.0046005					104	39	5	0	0	0	0.24207	3	13163	13151;13163;13177		133.47	0	1	4345800	+		7706	37106	4975	4990	9303;9304;9305	9304					0.05864118971044263
DLQLWLFL	8	Unmodified	_DLQLWLFL_					0	0	0			REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.29731	1046.58007	0.10462	5.485E-05	0.89916	0.00047143	1.0038	0.00052628	524.2977018509177	102.86	0.78268	102.73	102.49	103.27	-0.12931	-0.21299	0.00013351	NaN	133.81	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310210	+		7707	37106	4975	4990							0.05864118971044263
DLQLWLFL	8	Unmodified	_DLQLWLFL_					0	0	0			REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.29731	1046.58007	-0.082379	-4.3191E-05	0.91586	0.00048018	0.83348	0.00043699	524.2978100175585	103.08	0.88064	102.95	102.5	103.38	-0.12783	0.010912	0.00015102	NaN	133.81	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219760	+		7708	37106	4975	4990							0.05864118971044263
DLQLWLFL	8	Unmodified	_DLQLWLFL_					0	0	0			REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	REV__nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.29731	1046.58007	0.35612	0.00018671	0.52174	0.00027355	0.87786	0.00046026	524.2975745436923	102.94	0.89803	102.77	102.42	103.32	-0.17034	-0.17236	-0.00026225	NaN	133.81	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221080	+		7709	37106	4975	4990							0.05864118971044263
DLQQNEPWFL	10	Unmodified	_DLQQNEPWFL_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.7383728027344	3	430.543544	1288.6088	-0.12335	-5.3106E-05	1.4046	0.00060472	1.2812	0.00055162	430.8784507837497	39.453	1.0185	39.288	38.862	39.881	-0.16458					43	26	2	0	0	0	0.03519	1	3380	3380		15.333	0	1	554190	+		7710	28678	4976	4991	9306	9306					-0.023958081904766004
DLQQYKIAN	9	Unmodified	_DLQQYKIAN_					0	0	0		nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2590942382812	2	546.787838	1091.56112	-0.54011	-0.00029532	4.2131	0.0023037	3.673	0.0020084	546.7907875093138	52.29	0.42733	52.106	51.927	52.354	-0.18404					13	10	2	0	0	0	0.024456	1	5443	5443		51.193	19.663	1	134930			7711	4765	4977	4992	9307	9307					0.01900537609321873
DLQSLPND	8	Unmodified	_DLQSLPND_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;nc|ENSG00000119522|Q8TEH3-4|DENND1A;ENST00000491650.5_1_9:126219181-126371720:-|nuORF;ENST00000474676.1_1_9:126331853-126520026:-|nuORF;DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion	nc|ENSG00000119522|Q8TEH3-2|DENND1A;DENND1A-ENG|1|fusion	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2818908691406	2	451.216714	900.418876	-0.41248	-0.00018612	-1.1487	-0.00051832	-1.5612	-0.00070444	451.2161532142314	51.57	0.13944	51.423	51.371	51.511	-0.14735					5	3	2	0	0	0	0.027866	1	5447	5447		27.882	4.8398	1	64104			7712	18210;630	4978	4993	9308	9308					-0.035316751328537066
DLQTWGPTL	9	Unmodified	_DLQTWGPTL_					0	0	0			REV__ENSG00000187626|ENST00000377294|ZKSCAN4	REV__ENSG00000187626|ENST00000377294|ZKSCAN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7901000976562	2	515.763832	1029.51311	-0.28882	-0.00014896	3.4506	0.0017797	3.1618	0.0016307	515.7655398474974	52.08	0.75622	51.933	51.609	52.366	-0.14735					34	20	2	0	0	0	0.024021	1	5605	5605		49.442	0	1	1404700	+		7713	27951	4979	4994	9309	9309					-0.0004653631069686526
DLQVQCNPY	9	Unmodified	_DLQVQCNPY_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.805908203125	2	540.244949	1078.47534	-0.62084	-0.0003354	3.0724	0.0016599	2.4516	0.0013245	540.2468254099756	59.561	0.48349	59.647	59.314	59.798	0.085682					18	12	2	0	0	0	0.024263	1	6731	6731		42.396	14.514	1	166180			7714	17858	4980	4995	9310	9310					-0.06075370567828031
DLQVQCNPY	9	Unmodified	_DLQVQCNPY_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.244949	1078.47534	0.68989	0.00037271	2.0535	0.0011094	2.7434	0.0014821	540.2460222138455	60.007	0.37377	59.809	59.537	59.911	-0.19742	0.051664	-0.00050927	NaN	34.173	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205090			7715	17858	4980	4995							-0.06075370567828031
DLQVQCNPY	9	Unmodified	_DLQVQCNPY_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|28|2|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.244949	1078.47534	-1.1132	-0.00060138	4.7087	0.0025438	3.5955	0.0019425	540.2477855944946	60.065	0.60528	59.817	59.571	60.177	-0.24842	0.059307	0.0023596	NaN	34.173	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292580			7716	17858	4980	4995							-0.06075370567828031
DLRAANILV	9	Unmodified	_DLRAANILV_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC;ENST00000493775.1_1_20:36030831-36031351:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENST00000526097.1_1_8:11418120-11421614:+|nuORF;ENSG00000136573|ENST00000259089|BLK;ENST00000469765.5_1_1:32745435-32751314:+|nuORF;LCK|p.L453Rfs*19|1|0.06|ENSG00000182866|chr1:32285541-32285542|-/CCGACCCAGACAGAGACCACTCACT|frameshift_variant;ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-2|HCK;nc|ENSG00000101336|P08631-4|HCK;ENSG00000101336|ENST00000375852|HCK	ENSG00000197122|ENST00000373578|SRC;ENST00000469765.5_1_1:32745435-32751314:+|nuORF;ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000101336|P08631-3|HCK	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.79534912109375	2	492.795466	983.57638	0.46511	0.0002292	3.638	0.0017928	4.1031	0.002022	492.79706052738436	97.518	2.7521	97.527	95.437	98.189	0.0089111					82	63	2	0	0	0	0.6504	1	12385	12385		49.442	1.5259	1	1424600			7717	9958;9171;715;2312	4981	4996	9311	9311					0.08393449197171776
DLRAQTKIV	9	Unmodified	_DLRAQTKIV_					0	0	0		ENST00000414296.2_1_7:29749661-29781880:+|nuORF	ENST00000414296.2_1_7:29749661-29781880:+|nuORF	ENST00000414296.2_1_7:29749661-29781880:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7587280273438	2	522.314023	1042.61349	-0.54644	-0.00028541	0.6433	0.00033601	0.096865	5.0594E-05	522.3142907706543	41.139	0.65974	41.004	40.712	41.372	-0.13553					41	16	3	0	0	0	0.024374	1	3635	3635		19.104	0	1	1744400			7718	13859	4982	4997	9312	9312					0.0938912074293512
DLRDGLPVL	9	Unmodified	_DLRDGLPVL_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.2889099121094	2	499.287474	996.560395	-0.24388	-0.00012177	-1.2439	-0.00062108	-1.4878	-0.00074284	499.2867375265346	49.286	0.91495	49.133	48.864	49.779	-0.15277					45	24	3	0	0	0	0.35646	1	5072	5072		68.787	6.6794	1	2000600			7719	10973	4983	4998	9313	9313					0.061977429602734446
DLRDLRRG	8	Unmodified	_DLRDLRRG_					0	0	0			REV__ENST00000417972.5_1_2:157187265-157188308:-|nuORF	REV__ENST00000417972.5_1_2:157187265-157188308:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.818603515625	2	500.785964	999.557376	-1.078	-0.00053985	3.0067	0.0015057	1.9287	0.00096585	501.2894563294529	93.646	0.13017	93.506	93.441	93.571	-0.13995					4	2	2	0	0	0	0.027866	1	11511	11511		17.365	0.89182	1	47350	+		7720	32106	4984	4999	9314	9314					0.05757912626143025
DLREKLTIIPQ	11	Unmodified	_DLREKLTIIPQ_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2741394042969	3	442.59776	1324.77145	0.21149	9.3606E-05	4.002	0.0017713	4.2135	0.0018649	442.5994465708759	49.81	1.3799	49.659	49.113	50.493	-0.1512					70	38	2	0	0	0	0.024797	1	5276	5276		10.998	6.1121	1	795010			7721	977	4985	5000	9315	9315					0.1220557521153296
DLREQLTT	8	Unmodified	_DLREQLTT_					0	0	0		ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF;ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.30023193359375	2	488.258914	974.503274	0.49043	0.00023946	4.0217	0.0019636	4.5121	0.0022031	488.26074398768543	69.621	0.74364	69.328	68.97	69.714	-0.29292					41	18	3	0	0	0	0.027866	1	8318	8318		37.159	5.2042	1	1133000			7722	10676	4986	5001	9316	9316					0.015002756838953246
DLREQLTT	8	Unmodified	_DLREQLTT_					0	0	0		ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF;ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.258914	974.503274	-0.17826	-8.7036E-05	4.7886	0.0023381	4.6103	0.002251	488.2610657059872	69.29	0.61282	69.29	69.056	69.669	0	-0.063513	-0.00011131	NaN	37.159	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446600			7723	10676	4986	5001							0.015002756838953246
DLREQLTT	8	Unmodified	_DLREQLTT_					0	0	0		ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF;ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.258914	974.503274	-0.77332	-0.00037758	5.5329	0.0027015	4.7596	0.0023239	488.26114077298814	69.667	0.6253	69.4	69.206	69.831	-0.26725	0.046251	0.00061555	NaN	37.159	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265180			7724	10676	4986	5001							0.015002756838953246
DLREQLTT	8	Unmodified	_DLREQLTT_					0	0	0		ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF;ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.258914	974.503274	0.18055	8.8157E-05	4.417	0.0021566	4.5975	0.0022448	488.26054120707704	69.623	0.5755	69.372	69.115	69.691	-0.25063	0.018711	-0.00047421	NaN	37.159	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406380			7725	10676	4986	5001							0.015002756838953246
DLREQLTT	8	Unmodified	_DLREQLTT_					0	0	0		ENST00000595588.5_2_2:98290935-98319166:+|nuORF;ENST00000601509.5_2_2:98287946-98319166:+|nuORF;ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	ENST00000595588.5_2_2:98290935-98319166:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	488.258914	974.503274	0.13314	6.5006E-05	4.4847	0.0021897	4.6179	0.0022547	488.2605111146048	69.564	0.66125	69.341	69.145	69.806	-0.22245	-0.012447	-0.00040802	NaN	37.159	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451350			7726	10676	4986	5001							0.015002756838953246
DLRGIQQLYG	10	Unmodified	_DLRGIQQLYG_					0	0	0		MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant;ENSG00000102996|ENST00000219271|MMP15	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.814208984375	2	581.814387	1161.61422	0.50793	0.00029552	-0.45072	-0.00026224	0.05721	3.3286E-05	581.813963324668	21.01	0.59025	21.079	20.759	21.349	0.068901					25	11	3	0	0	0	0.80817	1	564	564		60.118	3.6845	1	136940			7727	2453	4987	5002	9317	9317					0.0398791539200829
DLRGIQQLYG	10	Unmodified	_DLRGIQQLYG_					0	0	0		MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant;ENSG00000102996|ENST00000219271|MMP15	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	581.814387	1161.61422	-2.1197	-0.0012333	2.0022	0.0011649	-0.11754	-6.8385E-05	581.8154809034485	20.936	0.73587	20.936	20.656	21.392	0	-0.064042	0.0010739	NaN	60.118	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141570			7728	2453	4987	5002							0.0398791539200829
DLRGIQQLYG	10	Unmodified	_DLRGIQQLYG_					0	0	0		MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant;ENSG00000102996|ENST00000219271|MMP15	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	581.814387	1161.61422	-1.1494	-0.00066876	0.59041	0.00034351	-0.55903	-0.00032525	581.8146081460027	21.075	0.86646	20.985	20.537	21.403	-0.090092	-0.014822	-0.00056885	NaN	60.118	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166010			7729	2453	4987	5002							0.0398791539200829
DLRIKSQEL	9	Unmodified	_DLRIKSQEL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3157958984375	2	551.316763	1100.61897	-0.71447	-0.0003939	-0.40677	-0.00022426	-1.1212	-0.00061816	551.3164013931482	43.878	0.59616	43.773	43.434	44.03	-0.10468					49	15	4	0	0	0	0.22379	1	4057	4057		85.862	9.0877	1	2372000			7730	9952	4988	5003	9318	9318					0.07268799534767822
DLRIKSQEL	9	Unmodified	_DLRIKSQEL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3163452148438	2	551.316763	1100.61897	-1.0497	-0.00057871	0.23309	0.00012851	-0.81659	-0.0004502	551.3167087193317	44.061	0.70056	43.817	43.52	44.22	-0.2444					51	18	4	0	0	0	0.28047	1	4060	4060		78.264	0.9462	1	2602800			7731	9952	4988	5003	9319	9319					0.07268799534767822
DLRIKSQEL	9	Unmodified	_DLRIKSQEL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3158569335938	2	551.316763	1100.61897	-1.0592	-0.00058397	0.080748	4.4518E-05	-0.97848	-0.00053945	551.316633911081	44.048	0.65097	43.829	43.525	44.176	-0.21938					49	17	4	0	0	0	0.54416	1	4063	4063		56.434	3.4971	1	2430300			7732	9952	4988	5003	9320	9320					0.07268799534767822
DLRKEHGE	8	Unmodified	_DLRKEHGE_					0	0	0			REV__ENSG00000101493|ENST00000443185|ZNF516	REV__ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2731628417969	2	492.24888	982.483208	-0.26542	-0.00013065	-0.6703	-0.00032995	-0.93572	-0.00046061	492.24920246503166	23.715	0.38103	23.715	23.441	23.822	0					15	8	2	0	0	0	0.027866	1	947	947		40.778	24.305	1	44346	+		7733	21239	4989	5004	9321	9321					-0.008734752560371817
DLRMLMPH	8	Unmodified	_DLRMLMPH_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF;ENST00000521785.1_1_8:52348396-52348462:+|nuORF;ENST00000510834.1_1_5:34915843-34920030:+|nuORF;ENST00000515798.5_1_5:34915843-34922393:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3083190917969	2	506.756972	1011.49939	-0.87712	-0.00044448	3.8437	0.0019478	2.9666	0.0015033	506.75697132526034	43.69	0.66108	43.453	43.136	43.797	-0.23736					37	17	3	0	0	0	0.027866	1	4035	4035		35.201	0	1	407900			7734	3296	4990	5005	9322	9322					-0.005898086151546522
DLRPKALMV	9	Unmodified	_DLRPKALMV_					0	0	0			REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7962646484375	2	521.807519	1041.60049	-1.2229	-0.0006381	-2.2612	-0.0011799	-3.4841	-0.001818	522.3080744142694	39.063	0.17599	38.898	38.795	38.971	-0.16458					6	4	2	0	0	0	0.024381	1	3266	3266		21.96	9.0007	1	43609	+		7735	36760	4991	5006	9323	9323					0.08134966359216378
DLRQMIIAL	9	Unmodified	_DLRQMIIAL_					0	0	0			REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3495483398438	2	536.812802	1071.61105	-0.48163	-0.00025854	1.2847	0.00068966	0.8031	0.00043111	536.813166696007	87.829	0.44531	87.65	87.363	87.809	-0.17875					16	10	2	0	0	0	0.024487	1	10660	10660		17.365	0.89182	1	127340	+		7736	27548	4992	5007	9324	9324					0.07810949013628488
DLRRCPRS	8	Unmodified	_DLRRCPRS_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;ENST00000552420.5_1_12:57870791-57873587:-|nuORF;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;ENST00000546200.5_1_12:57870467-57871594:-|nuORF;ENST00000547216.1_1_12:57871100-57871594:-|nuORF;ENST00000551000.1_1_12:57871100-57871616:-|nuORF	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENST00000547216.1_1_12:57871100-57871594:-|nuORF	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7928466796875	2	501.766717	1001.51888	-2.1502	-0.0010789	0.81956	0.00041123	-1.3307	-0.00066768	501.7666307118951	52.045	0.43336	51.776	51.548	51.981	-0.26903					16	11	2	0	0	0	0.027866	1	5404	5404		53.351	7.3792	1	465870			7737	3968;16524	4993	5008	9325	9325					0.018182837199674395
DLRRQLLV	8	Unmodified	_DLRRQLLV_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.26605224609375	2	506.816733	1011.61891	0.24051	0.00012189	3.3408	0.0016932	3.5813	0.001815	506.8183062237597	53.048	0.55189	52.921	52.591	53.143	-0.12705					27	13	3	0	0	0	0.027866	1	5518	5518		38.806	3.1879	1	526400	+		7738	28526	4994	5009	9326	9326					0.1135684432541666
DLRRQLLV	8	Unmodified	_DLRRQLLV_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2663879394531	2	506.816733	1011.61891	0.24541	0.00012438	3.1984	0.001621	3.4438	0.0017454	506.81834801464413	53.216	0.69102	52.958	52.644	53.335	-0.25838					36	17	3	0	0	0	0.027866	1	5547	5547		38.806	3.6054	1	417250	+		7739	28526	4994	5009	9327	9327					0.1135684432541666
DLRTKATI	8	Unmodified	_DLRTKATI_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2748107910156	2	459.274367	916.53418	0.039592	1.8184E-05	-0.067287	-3.0903E-05	-0.027695	-1.272E-05	459.27419557269826	34.311	0.73741	34.087	33.762	34.499	-0.22412					46	18	3	0	0	0	0.34573	1	2515	2515		104.75	16.104	1	2902200			7740	4257;37903	4995	5010	9328	9328					0.07257473788797597
DLRTKATI	8	Unmodified	_DLRTKATI_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2742614746094	2	459.274367	916.53418	-0.25851	-0.00011873	0.24488	0.00011247	-0.013631	-6.2602E-06	459.274316045816	34.27	0.98732	34.063	33.824	34.812	-0.20696					55	24	4	0	0	0	0.34573	1	2507	2507		104.75	13.97	1	2601100			7741	4257;37903	4995	5010	9329	9329					0.07257473788797597
DLRTKATI	8	Unmodified	_DLRTKATI_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2740783691406	2	459.274367	916.53418	-0.78591	-0.00036095	0.55997	0.00025718	-0.22595	-0.00010377	459.27451523719617	34.257	0.78986	34.081	33.781	34.571	-0.17557					50	19	4	0	0	0	0.30694	1	2501	2501		110.12	3.7047	1	2617200			7742	4257;37903	4995	5010	9330	9330					0.07257473788797597
DLRTKGFSL	9	Unmodified	_DLRTKGFSL_					0	0	0		ENST00000530567.1_1_11:64976762-64977505:+|nuORF;ENSG00000014216|ENST00000279247|CAPN1	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7926025390625	2	518.792924	1035.57129	0.45961	0.00023844	-1.3333	-0.00069172	-0.87371	-0.00045328	518.7922700880588	51.498	1.0039	51.386	51.089	52.093	-0.11232					85	26	5	0	0	0	0.28047	2	5284	5284;5296		78.264	6.3863	1	22487000			7743	924	4996	5011	9331;9332	9331					0.05493145334571636
DLRTKGFSL	9	Unmodified	_DLRTKGFSL_					0	0	0		ENST00000530567.1_1_11:64976762-64977505:+|nuORF;ENSG00000014216|ENST00000279247|CAPN1	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7928466796875	2	518.792924	1035.57129	-1.3156	-0.00068252	0.27792	0.00014418	-1.0377	-0.00053834	518.793110653343	51.777	1.4702	51.508	51.203	52.673	-0.26903					105	38	5	0	0	0	0.1764	1	5337	5337		93.598	9.9506	1	22848000			7744	924	4996	5011	9333	9333					0.05493145334571636
DLRTTSTL	8	Unmodified	_DLRTTSTL_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;nc|ENSG00000138468|Q9BQF6-3|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.7484436035156	2	453.748182	905.481811	0.10431	4.733E-05	-1.1307	-0.00051304	-1.0264	-0.00046571	453.748013450143	42.94	0.71524	42.828	42.538	43.253	-0.11253					44	18	4	0	0	0	0.27613	1	3902	3902		122.18	22.801	1	1971200			7745	5248	4997	5012	9334	9334					0.025288906552077606
DLRTTSTL	8	Unmodified	_DLRTTSTL_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7;nc|ENSG00000138468|Q9BQF6-3|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.7483825683594	2	453.748182	905.481811	-0.30032	-0.00013627	-0.56324	-0.00025557	-0.86356	-0.00039184	453.74822569126724	43.092	0.64738	42.855	42.6	43.247	-0.23736					41	16	4	0	0	0	0.27613	1	3913	3913		122.18	22.801	1	1813400			7746	5248	4997	5012	9335	9335					0.025288906552077606
DLRVLNLM	8	Unmodified	_DLRVLNLM_					0	0	0		nc|ENSG00000154099|Q8NEP3-3|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1	nc|ENSG00000154099|Q8NEP3-3|DNAAF1	nc|ENSG00000154099|Q8NEP3-3|DNAAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.307373046875	2	487.278595	972.542637	-0.012779	-6.2269E-06	0.99643	0.00048554	0.98365	0.00047931	487.2795050661533	20.63	0.29774	20.407	20.167	20.464	-0.22344					7	5	2	0	0	0	0.027866	1	550	550		11.511	0.64546	1	17404			7747	6380	4998	5013	9336	9336					0.05526704433771101
DLRVRQEI	8	Unmodified	_DLRVRQEI_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3084716796875	2	514.795998	1027.57744	0.24128	0.00012421	-2.9248	-0.0015057	-2.6835	-0.0013815	514.7946329604947	87.377	0.42166	87.341	87.11	87.532	-0.035355					14	9	2	0	0	0	0.027866	1	10949	10949		53.351	0	1	56338			7748	4822	4999	5014	9337	9337					0.06475663566084222
DLRVSILR	8	Unmodified	_DLRVSILR_					0	0	0		ENST00000423759.5_1_X:70644085-70674061:+|nuORF	ENST00000423759.5_1_X:70644085-70674061:+|nuORF	ENST00000423759.5_1_X:70644085-70674061:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.75921630859375	2	486.303458	970.592364	-0.60388	-0.00029367	4.2881	0.0020853	3.6842	0.0017917	486.30558180639736	37.522	0.65895	37.554	37.264	37.923	0.032269					40	17	3	0	0	0	0.027866	1	3012	3012		23.042	6.5693	1	754790			7749	14030	5000	5015	9338	9338					0.10589155434092845
DLRVTSLEP	9	Unmodified	_DLRVTSLEP_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3082275390625	2	515.282389	1028.55022	-0.18403	-9.4829E-05	-1.8674	-0.00096224	-2.0514	-0.0010571	515.7822782453633	87.27	1.3603	87.091	86.131	87.491	-0.17875					44	31	2	0	0	0	0.024319	1	10610	10610		47.657	0	1	176070	+		7750	20429	5001	5016	9339	9339					0.03709135235044414
DLRWFRANHGP	11	Unmodified	_DLRWFRANHGP_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.26922607421875	3	456.902177	1367.6847	-0.32391	-0.000148	-0.32765	-0.0001497	-0.65156	-0.0002977	456.90179449215236	47.933	0.51506	47.78	47.542	48.057	-0.15301					23	15	2	0	0	0	0.024801	1	4797	4797		23.378	8.6842	1	601900			7751	2163	5002	5017	9340	9340					0.015566335003086351
DLSAEWIAL	9	Unmodified	_DLSAEWIAL_					0	0	0			REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.3258972167969	2	509.266207	1016.51786	-0.25125	-0.00012796	0.17238	8.7788E-05	-0.078873	-4.0167E-05	509.26621978844565	77.851	0.72358	77.689	77.398	78.122	-0.16196					45	16	4	0	0	0	0.022756	1	9267	9267		58.782	0	1	504520	+		7752	25037	5003	5018	9341	9341					0.010263478320325703
DLSAHLMV	8	Unmodified	_DLSAHLMV_					0	0	0		ENST00000464863.1_1_6:32825734-32826344:+|nuORF;ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	ENST00000464863.1_1_6:32825734-32826344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2669677734375	2	443.228571	884.442588	-1.1442	-0.00050715	-3.3497	-0.0014847	-4.4939	-0.0019918	443.22692334802446	29.315	0.70178	29.315	28.99	29.692	0					30	17	2	0	0	0	0.027866	1	1843	1843		13.775	0.81615	1	850830			7753	10767	5004	5019	9342	9342					-0.004255329000216079
DLSATTVHCT	10	Unmodified	_DLSATTVHCT_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A;REV__ENST00000459908.5_1_13:113439469-113512287:+|nuORF	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	524.242406	1046.47026	0.15975	8.3746E-05	0.18926	9.9221E-05	0.34901	0.00018297	524.2423233068007	88.226	0.49245	88.088	87.823	88.315	-0.13744					26	11	3	0	0	0	0.03519	1	10752	10752		47.657	32.016	1	189660	+		7754	20382;32833	5005	5020	9343	9343					-0.05111674430440871
DLSDYKSKT	9	Unmodified	_DLSDYKSKT_					0	0	0			REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.8169555664062	2	528.764029	1055.5135	-0.10878	-5.7518E-05	-1.5982	-0.0008451	-1.707	-0.00090262	528.7625606075981	32.069	0.6034	31.832	31.57	32.173	-0.23667					23	13	3	0	0	0	0.024511	1	2204	2204		19.104	10.868	1	97136	+		7755	21819	5006	5021	9344	9344					-0.012031613815224773
DLSFWKED	8	Unmodified	_DLSFWKED_					0	0	0		ENST00000458191.5_1_7:48004189-48004931:-|nuORF	ENST00000458191.5_1_7:48004189-48004931:-|nuORF	ENST00000458191.5_1_7:48004189-48004931:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.7792358398438	2	520.24019	1038.46583	0.37855	0.00019694	2.6837	0.0013962	3.0622	0.0015931	520.2414700032988	86.186	0.69777	86.049	85.745	86.443	-0.13734					35	15	3	0	0	0	0.027866	1	10466	10466		47.916	16.386	1	393830			7756	14620	5007	5022	9345	9345					-0.051868155817146544
DLSGHFNI	8	Unmodified	_DLSGHFNI_					0	0	0		ENST00000497655.1_1_1:202933728-202933848:-|nuORF	ENST00000497655.1_1_1:202933728-202933848:-|nuORF	ENST00000497655.1_1_1:202933728-202933848:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7792663574219	2	451.721967	901.429381	-0.13794	-6.2311E-05	3.5457	0.0016017	3.4078	0.0015394	451.7225156167197	30.963	0.58838	30.811	30.298	30.887	-0.15231					24	13	3	0	0	0	0.027866	1	1962	1962		63.306	5.495	1	50378			7757	15599	5008	5023	9346	9346					-0.02527647687747958
DLSGNGLREL	10	Unmodified	_DLSGNGLREL_					0	0	0		ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8185424804688	2	537.28292	1072.55129	-0.20802	-0.00011177	3.8715	0.0020801	3.6635	0.0019683	537.2847800991094	67.734	1.0192	67.734	66.968	67.987	0					36	25	3	0	0	0	0.03519	1	7988	7988		39.253	3.6345	1	584660			7758	8564	5009	5024	9347	9347					0.017913496039454913
DLSGNGLREL	10	Unmodified	_DLSGNGLREL_					0	0	0		ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.28292	1072.55129	-0.32155	-0.00017276	3.6234	0.0019468	3.3019	0.001774	537.2846617346372	68.084	0.6689	67.796	67.388	68.057	-0.28834	0.028728	-0.00016231	NaN	47.657	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463890			7759	8564	5009	5024							0.017913496039454913
DLSGNGLREL	10	Unmodified	_DLSGNGLREL_					0	0	0		ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.28292	1072.55129	0.60257	0.00032375	3.0758	0.0016526	3.6784	0.0019763	537.2845727568944	68.037	0.65172	67.782	67.497	68.148	-0.25516	0.01444	-0.00075077	NaN	47.657	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275320			7760	8564	5009	5024							0.017913496039454913
DLSGNGLREL	10	Unmodified	_DLSGNGLREL_					0	0	0		ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.28292	1072.55129	-0.087557	-4.7043E-05	4.2317	0.0022736	4.1442	0.0022266	537.2849145276191	68.01	0.52617	67.776	67.555	68.081	-0.23376	0.0085899	0.00049133	NaN	47.657	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290560			7761	8564	5009	5024							0.017913496039454913
DLSGNGLREL	10	Unmodified	_DLSGNGLREL_					0	0	0		ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	ENSG00000175489|ENST00000339007|LRRC25	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.28292	1072.55129	-0.50326	-0.00027039	3.8838	0.0020867	3.3805	0.0018163	537.2850131628918	67.987	0.52296	67.749	67.508	68.031	-0.23814	-0.018295	0.00011746	NaN	47.657	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320520			7762	8564	5009	5024							0.017913496039454913
DLSIIAELL	9	Unmodified	_DLSIIAELL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MSMS	OPSCC_39_ClassI_Rep-2	2	493.7939453125	2	493.792058	985.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.35	1	106.34	105.84	106.84	-0.0013123								0	0	0	0.21697	1	13613	13613		73.975	10.668	1		+		7763	29044	5010	5025	9348	9348					0.07620091525961925
DLSIRLRA	8	Unmodified	_DLSIRLRA_					0	0	0			REV__ENST00000479767.1_1_9:139651519-139651801:-|nuORF	REV__ENST00000479767.1_1_9:139651519-139651801:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7555236816406	2	472.287808	942.561064	0.4612	0.00021782	-1.4681	-0.00069336	-1.0069	-0.00047554	472.28886531667143	42.896	0.21752	42.756	42.667	42.885	-0.13929					9	5	3	0	0	0	0.027866	1	3980	3980		47.916	0	1	56391	+		7764	33409	5011	5026	9349	9349					0.08748582399982752
DLSIVTLFF	9	Unmodified	_DLSIVTLFF_					0	0	0			REV__ENSG00000183671|ENST00000621141|CMKLR2	REV__ENSG00000183671|ENST00000621141|CMKLR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2644653320312	2	527.794601	1053.57465	-0.77648	-0.00040982	2.766	0.0014599	1.9895	0.00105	527.7963558647889	48.63	0.21126	48.477	48.329	48.54	-0.15277					10	5	3	0	0	0	0.024466	1	4943	4943		33.516	0	1	325350	+		7765	27596	5012	5027	9350	9350					0.05000395388583456
DLSLGGVLLF	10	Unmodified	_DLSLGGVLLF_					0	0	0		nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.784423828125	2	517.30005	1032.58555	0.53858	0.00027861	2.9629	0.0015327	3.5014	0.0018113	517.3008914149646	72.319	0.3055	72.037	71.956	72.262	-0.28124					9	7	2	0	0	0	0.03519	1	8782	8782		63.306	0	1	84482			7766	4549	5013	5028	9351	9351					0.07055797762859584
DLSLLHNI	8	Unmodified	_DLSLLHNI_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.772216796875	2	462.761092	923.507631	0.36024	0.00016671	-1.6642	-0.00077014	-1.304	-0.00060343	462.7601732101444	98.324	0.71771	98.334	98.062	98.78	0.010231					36	16	3	0	0	0	0.027866	1	12528	12528		45.952	0	1	305590	+		7767	25869	5014	5029	9352	9352					0.04281784897466423
DLSNELSR	8	Unmodified	_DLSNELSR_					0	0	0			REV__ENSG00000162714|ENST00000682384|ZNF496	REV__ENSG00000162714|ENST00000682384|ZNF496	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.942626953125	2	467.235439	932.456324	0.14374	6.716E-05	3.0337	0.0014175	3.1774	0.0014846	467.2368542341891	100.29	0.90886	100.29	100.04	100.95	0					25	21	2	0	0	0	0.027866	1	12892	12892		11.511	0.64546	1	146130	+		7768	25479	5015	5030	9353	9353					-0.012605838672357095
DLSPGLELSA	10	Unmodified	_DLSPGLELSA_					0	0	0			REV__ENSG00000102034|ENST00000308167|ELF4	REV__ENSG00000102034|ENST00000308167|ELF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2907409667969	2	501.261122	1000.50769	-0.28273	-0.00014172	4.0091	0.0020096	3.7264	0.0018679	501.26291619736173	85.795	0.20367	85.737	85.603	85.807	-0.05761					6	4	2	0	0	0	0.03519	1	10738	10738		25.574	4.6271	1	52767	+		7769	21279	5016	5031	9354	9354					0.00745740106822268
DLSPRSVI	8	Unmodified	_DLSPRSVI_					0	0	0		ENST00000488149.5_1_3:182948954-183027611:-|nuORF	ENST00000488149.5_1_3:182948954-183027611:-|nuORF	ENST00000488149.5_1_3:182948954-183027611:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2686767578125	2	443.753267	885.491981	-0.5405	-0.00023985	2.4854	0.0011029	1.9449	0.00086304	443.75365344978934	28.832	0.25997	28.663	28.467	28.727	-0.16897					9	5	2	0	0	0	0.027866	1	1703	1703		19.36	0	1	50428			7770	15385	5017	5032	9355	9355					0.04465498380432109
DLSPRYLK	8	Unmodified	_DLSPRYLK_					0	0	0		nc|ENSG00000214447|A6NFU0|FAM187A	nc|ENSG00000214447|A6NFU0|FAM187A	nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7793273925781	2	496.282192	990.549831	0.46041	0.00022849	-0.83548	-0.00041463	-0.37507	-0.00018614	496.281073699412	51.043	0.65235	51.043	50.707	51.359	0					22	17	2	0	0	0	0.027866	1	5434	5434		44.117	12.587	1	303680			7771	18716	5018	5033	9356	9356					0.05417760305851971
DLSQVNVIPLI	11	Unmodified	_DLSQVNVIPLI_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8560180664062	2	605.855721	1209.69689	0.33333	0.00020195	-0.12759	-7.73E-05	0.20574	0.00012465	605.855435743201	82.134	1.6348	82.024	81.646	83.28	-0.11006					91	38	5	0	0	0	0.84811	1	10231	10231		54.776	0	1	2457500	+		7772	19833	5019	5034	9357	9357					0.10042812400160983
DLSRAVTIL	9	Unmodified	_DLSRAVTIL_					0	0	0		nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32581422-32635732:-|nuORF	nc|ENSG00000120616|Q9H2F5-3|EPC1	nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28656005859375	2	494.295299	986.576045	0.24194	0.00011959	1.075	0.00053139	1.317	0.00065098	494.29571822785255	67.387	0.68765	67.387	66.841	67.528	0					24	16	2	0	0	0	0.023842	1	8014	8014		67.494	4.1874	1	1059000			7773	3825	5020	5035	9358	9358					0.08222029477337855
DLSRAVTIL	9	Unmodified	_DLSRAVTIL_					0	0	0		nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32581422-32635732:-|nuORF	nc|ENSG00000120616|Q9H2F5-3|EPC1	nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.287109375	2	494.295299	986.576045	0.15787	7.8036E-05	3.4653	0.0017129	3.6231	0.0017909	494.297485919985	67.468	0.9064	67.492	67.028	67.935	0.023911					29	22	2	0	0	0	0.023454	1	7937	7937		62.107	5.3864	1	944390			7774	3825	5020	5035	9359	9359					0.08222029477337855
DLSRKAPLL	9	Unmodified	_DLSRKAPLL_					0	0	0			REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146	REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.76763916015625	2	506.811116	1011.60768	-0.84554	-0.00042853	0.39769	0.00020156	-0.44784	-0.00022697	506.811274897182	60.735	1.0936	60.814	60.465	61.558	0.078888					73	28	4	0	0	0	0.024025	1	6946	6946		71.877	24.22	1	3153900	+		7775	19255	5021	5036	9360	9360					0.10234022231293238
DLSSITDPLI	10	Unmodified	_DLSSITDPLI_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;ENST00000465910.5_1_10:50154093-50174894:+|nuORF	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.310791015625	2	537.289879	1072.56521	-0.39904	-0.0002144	-0.68409	-0.00036755	-1.0831	-0.00058196	537.2910111010324	53.874	0.63441	53.874	53.509	54.144	0					23	17	2	0	0	0	0.03519	1	5835	5835		20.947	0	1	142180			7776	18258	5022	5037	9361	9361					0.03182582312388149
DLSVATMTIL	10	Unmodified	_DLSVATMTIL_					0	0	0			REV__ENSG00000124818|ENST00000371211|OPN5	REV__ENSG00000124818|ENST00000371211|OPN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7904663085938	2	532.288825	1062.5631	-1.0896	-0.00057998	3.1597	0.0016819	2.0701	0.0011019	532.7912672287754	55.829	0.98753	55.927	55.409	56.397	0.097893					47	26	2	0	0	0	0.941	1	6115	6115		51.335	5.3835	1	4894300	+		7777	22793	5023	5038	9362	9362					0.03431830302952221
DLSVRVAL	8	Unmodified	_DLSVRVAL_					0	0	0			REV__ENST00000521657.5_1_5:67522191-67522233:+|nuORF	REV__ENST00000521657.5_1_5:67522191-67522233:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.25311279296875	2	436.763635	871.512717	0.70002	0.00030574	-1.3212	-0.00057706	-0.62121	-0.00027132	436.76296635678847	50.695	0.4787	50.514	50.282	50.76	-0.18071					17	12	2	0	0	0	0.027866	1	5135	5135		29.15	1.2673	1	692080	+		7778	34320	5024	5039	9363	9363					0.071820887600893
DLSYTVISF	9	Unmodified	_DLSYTVISF_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0-2|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7645263671875	2	522.76604	1043.51753	-1.296	-0.0006775	-1.6632	-0.00086948	-2.9592	-0.001547	522.7650381992048	35.798	0.83904	35.756	35.405	36.244	-0.042458					59	22	3	0	0	0	0.31247	1	2757	2757		73.975	0	1	5220200	+		7779	36673	5025	5040	9364	9364					-0.002490718878334519
DLTAHFLI	8	Unmodified	_DLTAHFLI_					0	0	0		ZNF528|p.G461E|1|0.19|ENSG00000167555|chr19:52416234-52416234|G/A|missense_variant;nc|ENSG00000167555|Q3MIS6-2|ZNF528;ENST00000598479.1_1_19:52918345-52919989:+|nuORF;ENSG00000167555|ENST00000360465|ZNF528	ZNF528|p.G461E|1|0.19|ENSG00000167555|chr19:52416234-52416234|G/A|missense_variant	ZNF528|p.G461E|1|0.19|ENSG00000167555|chr19:52416234-52416234|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2541198730469	2	465.258185	928.501818	0.031224	1.4527E-05	-3.6246	-0.0016864	-3.5934	-0.0016719	465.25594412466637	39.975	0.7513	39.975	39.696	40.448	0					43	20	3	0	0	0	0.027866	1	3442	3442		20.482	0	1	526180			7780	7702	5026	5041	9365	9365					0.03470686385821864
DLTIDQLGIT	10	Unmodified	_DLTIDQLGIT_					0	0	0			REV__ENSG00000072736|ENST00000346183|NFATC3	REV__ENSG00000072736|ENST00000346183|NFATC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8021240234375	2	544.795329	1087.5761	-0.87807	-0.00047837	1.1241	0.00061239	0.246	0.00013402	544.7955155484799	57.009	0.62324	56.845	56.459	57.083	-0.16431					27	17	2	0	0	0	0.03519	1	6345	6345		24.519	0	1	258820	+		7781	20478	5027	5042	9366	9366					0.03581984686661599
DLTILKIKNPK	11	Unmodified	_DLTILKIKNPK_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2872009277344	3	428.274617	1281.80202	0.99089	0.00042437	-0.69701	-0.00029851	0.29388	0.00012586	428.27408769688213	62.931	0.50747	62.985	62.76	63.267	0.054104					21	12	3	0	0	0	0.024723	1	7256	7256		22.562	9.6041	1	144450	+		7782	19859	5028	5043	9367	9367					0.17239353596528417
DLTLDRGIR	9	Unmodified	_DLTLDRGIR_					0	0	0			REV__ENST00000314531.4_1_19:2934583-2934736:-|nuORF	REV__ENST00000314531.4_1_19:2934583-2934736:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8013916015625	2	529.80128	1057.58801	0.36957	0.0001958	-0.75925	-0.00040225	-0.38968	-0.00020645	529.8008825330886	40.837	1.234	40.714	40.162	41.396	-0.12317					80	34	4	0	0	0	0.31037	1	3620	3620		74.255	4.6274	1	7153100	+		7783	30247	5029	5044	9368	9368					0.06151646220496332
DLTLLQQR	8	Unmodified	_DLTLLQQR_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant;PCNT|p.E641Kfs*58|1|0.13|ENSG00000160299|chr21:46355609-46355610|-/AAAGGTGT|frameshift_variant	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2582702636719	2	493.785099	985.555644	-0.016773	-8.2821E-06	-0.33646	-0.00016614	-0.35323	-0.00017442	493.7848452576167	41.491	0.81483	41.514	41.04	41.854	0.023006					50	22	4	0	0	0	0.027866	1	3716	3716		53.351	5.4358	1	3089700			7784	6803	5030	5045	9369	9369					0.06228858817519267
DLTPLDAL	8	Unmodified	_DLTPLDAL_					0	0	0			REV__ENSG00000111860|ENST00000368491|CEP85L	REV__ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.27655029296875	2	429.234376	856.454199	-0.32713	-0.00014042	-3.3662	-0.0014449	-3.6933	-0.0015853	429.2325382978033	43.218	0.23237	42.992	42.793	43.025	-0.22597					6	5	2	0	0	0	0.027866	1	3933	3933		96.048	30.15	1	44629	+		7785	21952	5031	5046	9370	9370					0.02022987394957454
DLTPSKGYIV	10	Unmodified	_DLTPSKGYIV_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2981567382812	2	546.800414	1091.58628	-0.26852	-0.00014683	-0.74416	-0.00040691	-1.0127	-0.00055373	546.8000671592499	55.156	0.68364	54.926	54.674	55.357	-0.23087					25	18	2	0	0	0	0.03519	1	5969	5969		51.335	1.8939	1	700150			7786	7239	5032	5047	9371	9371					0.04414592411899321
DLTQVQKN	8	Unmodified	_DLTQVQKN_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7738037109375	2	473.253631	944.49271	0.42432	0.00020081	-0.23661	-0.00011198	0.18771	8.8834E-05	473.2560378848159	55.842	0.22333	55.686	55.591	55.814	-0.15601					8	5	3	0	0	0	0.027866	1	6159	6159		34.173	12.213	1	54625			7787	5969	5033	5048	9372	9372					0.018242930294718462
DLTREMIPV	9	Unmodified	_DLTREMIPV_					0	0	0			REV__ENST00000475028.2_1_6:679447-689206:-|nuORF	REV__ENST00000475028.2_1_6:679447-689206:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3495483398438	2	537.286617	1072.55868	-0.58737	-0.00031558	1.8561	0.00099728	1.2688	0.00068169	537.2883051291462	89.542	0.37756	89.542	89.228	89.605	0					12	8	2	0	0	0	0.023596	1	11285	11285		63.306	11.971	1	41206	+		7788	33284	5034	5049	9373	9373					0.025303658800112316
DLTRETRPRT	10	Unmodified	_DLTRETRPRT_					0	0	0		nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.5340576171875	3	415.561709	1243.6633	0.8313	0.00034546	-4.3444	-0.0018054	-3.5131	-0.0014599	415.5598141368692	19.765	0.54536	19.565	19.206	19.751	-0.2001					15	10	2	0	0	0	0.03519	1	466	466		19.263	0	1	25571			7789	8008	5035	5050	9374	9374					0.051212036809374695
DLTRETRPRT	10	Unmodified	_DLTRETRPRT_					0	0	0		nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	415.561709	1243.6633	1.4512	0.00060307	-4.56	-0.0018949	-3.1087	-0.0012919	415.55981135548006	19.653	0.59338	19.419	19.126	19.72	-0.23345	-0.073076	-6.3783E-05	NaN	19.263	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20418			7790	8008	5035	5050							0.051212036809374695
DLTRLEDIKT	10	Unmodified	_DLTRLEDIKT_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	401.87115478515625	3	401.890832	1202.65067	1.9982	0.00080304	-4.202	-0.0016887	-2.2039	-0.00088571	401.8894823427286	30.655	0.12495	30.729	30.667	30.792	0.074314					4	2	2	0	0	0	0.03519	1	1928	1928		19.263	0.73163	1	28839	+		7791	23832;36707	5036	5051	9375	9375					0.05744747498010838
DLTVDAILQ	9	Unmodified	_DLTVDAILQ_					0	0	0			REV__ENSG00000204599|ENST00000396551|TRIM39	REV__ENSG00000204599|ENST00000396551|TRIM39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2894592285156	2	494.27149	986.528426	0.44372	0.00021932	2.3157	0.0011446	2.7594	0.0013639	494.2737543793924	61.433	0.57541	61.433	61.144	61.72	0					21	14	3	0	0	0	0.024427	1	7081	7081		42.396	3.59	1	1178100	+		7792	28623	5037	5052	9376	9376					0.034623304864680904
DLTVKIGDF	9	Unmodified	_DLTVKIGDF_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.24847412109375	2	504.274032	1006.53351	0.017797	8.9746E-06	-2.8785	-0.0014516	-2.8607	-0.0014426	504.27250844393654	20.192	0.97076	20.024	19.62	20.591	-0.16774					42	19	4	0	0	0	0.024495	1	512	512		19.997	4.355	1	541880			7793	6619	5038	5053	9377	9377					0.030506343490856125
DLTWGMIT	8	Unmodified	_DLTWGMIT_					0	0	0			REV__nc|ENSG00000087088|Q07812-6|BAX	REV__nc|ENSG00000087088|Q07812-6|BAX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7311706542969	2	468.728403	935.442254	0.40756	0.00019103	-2.8928	-0.0013559	-2.4852	-0.0011649	468.7262408382405	60.145	0.4854	60.145	59.88	60.366	0					16	12	2	0	0	0	0.027866	1	6903	6903		68.485	0	1	80826	+		7794	20786	5039	5054	9378	9378					-0.02804952619874257
DLTYVQPQR	9	Unmodified	_DLTYVQPQR_					0	0	0			REV__ENSG00000165188|ENST00000489339|RNF183	REV__ENSG00000165188|ENST00000489339|RNF183	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3113403320312	2	560.293288	1118.57202	-0.23521	-0.00013179	3.0496	0.0017087	2.8144	0.0015769	560.295106040127	52.242	0.89337	52.242	51.702	52.595	0					38	23	2	0	0	0	0.024477	1	5523	5523		20.947	0	1	393340	+		7795	25853	5040	5055	9379	9379					0.017479399836020093
DLVAKVSDFG	10	Unmodified	_DLVAKVSDFG_					0	0	0		PIP5K1C-MATK|2|fusion;PIP5K1C-MATK|1|fusion;nc|ENSG00000007264|P42679-3|MATK;ENSG00000007264|ENST00000310132|MATK;nc|ENSG00000007264|P42679-2|MATK	PIP5K1C-MATK|2|fusion	PIP5K1C-MATK|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.8270874023438	2	525.776939	1049.53933	0.56477	0.00029694	-1.6586	-0.00087205	-1.0938	-0.00057511	525.7759814149954	98.073	0.85576	97.936	97.377	98.233	-0.13625					45	20	3	0	0	0	0.03519	1	12115	12115		32.812	1.2335	1	226350			7796	813	5041	5056	9380	9380					0.016537328607682866
DLVAQMLGLPG	11	Unmodified	_DLVAQMLGLPG_					0	0	0			REV__nc|ENSG00000128928|P26440-2|IVD	REV__nc|ENSG00000128928|P26440-2|IVD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3047485351562	2	557.302267	1112.58998	0.2355	0.00013125	4.1367	0.0023054	4.3722	0.0024366	557.3044354908918	21.195	0.92703	21.004	20.735	21.662	-0.19072					46	18	3	0	0	0	1.0075	1	654	654		35.152	0.97948	1	451370	+		7797	23021	5042	5057	9381	9381					0.03818938914105274
DLVDVEKDG	9	Unmodified	_DLVDVEKDG_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3117980957031	2	495.242929	988.471305	-0.11347	-5.6196E-05	0.74628	0.00036959	0.63281	0.00031339	495.2432016892884	81.105	0.77232	80.867	80.531	81.303	-0.23784					43	18	4	0	0	0	0.024209	1	9682	9682		47.657	5.2612	1	684830	+		7798	20082	5043	5058	9382	9382					-0.023391367898966564
DLVDVEKDG	9	Unmodified	_DLVDVEKDG_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.242929	988.471305	0.31302	0.00015502	0.38233	0.00018934	0.69534	0.00034436	495.24295174979494	81.072	1.0758	80.866	80.587	81.663	-0.20633	-0.075479	-0.00074392	NaN	47.657	47	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676040	+		7799	20082	5043	5058							-0.023391367898966564
DLVDVEKDG	9	Unmodified	_DLVDVEKDG_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.242929	988.471305	-0.30755	-0.00015231	1.2651	0.00062651	0.9575	0.0004742	495.2433416167083	81.021	1.0372	80.879	80.576	81.613	-0.14249	-0.062734	0.0001304	NaN	47.657	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614620	+		7800	20082	5043	5058							-0.023391367898966564
DLVEIDSTT	9	Unmodified	_DLVEIDSTT_					0	0	0			REV__ENSG00000144747|ENST00000398559|TMF1	REV__ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.74114990234375	2	496.742762	991.470971	-1.1579	-0.0005752	-1.99	-0.00098852	-3.1479	-0.0015637	496.7416700945716	26.127	0.94948	25.963	25.716	26.666	-0.16331					84	26	4	0	0	0	0.80658	1	1296	1296		38.806	3.6541	1	7449900	+		7801	24359	5044	5059	9383	9383					-0.02510556509764683
DLVEITLKKMD	11	Unmodified	_DLVEITLKKMD_					0	0	0		ENSG00000034239|ENST00000262103|CLXN;nc|ENSG00000034239|Q9HAE3-2|CLXN	ENSG00000034239|ENST00000262103|CLXN	ENSG00000034239|ENST00000262103|CLXN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.57763671875	3	435.575856	1303.70574	0.29995	0.00013065	4.1582	0.0018112	4.4581	0.0019419	435.57752878572217	110.31	0.40344	110.3	110.16	110.56	-0.009491					48	14	4	0	0	0	1.0648	1	13953	13953		21.032	2.5012	1	488450			7802	1027	5045	5060	9384	9384					0.06603417974292825
DLVENKFL	8	Unmodified	_DLVENKFL_					0	0	0		ENSG00000184185|ENST00000583088|KCNJ12;ENSG00000260458|ENST00000567955|KCNJ18;KCNJ12|p.S371C|1|0.13|ENSG00000184185|chr17:21416453-21416453|A/T|missense_variant	ENSG00000184185|ENST00000583088|KCNJ12	ENSG00000184185|ENST00000583088|KCNJ12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2687683105469	2	489.26875	976.522947	-0.095309	-4.6632E-05	-0.53454	-0.00026154	-0.62985	-0.00030817	489.2684480785379	41.604	1.4395	41.374	41.003	42.442	-0.23029					81	38	3	0	0	0	0.87148	1	3697	3697		53.351	7.3995	1	10023000			7803	9312	5046	5061	9385	9385					0.03374651694673503
DLVESALQP	9	Unmodified	_DLVESALQP_					0	0	0			REV__ENST00000478171.1_1_3:48450818-48451478:-|nuORF	REV__ENST00000478171.1_1_3:48450818-48451478:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3087158203125	2	486.25584	970.497126	-1.1633	-0.00056566	-0.87691	-0.0004264	-2.0402	-0.00099206	486.25573187035195	20.418	0.19429	20.418	20.274	20.468	0					5	3	2	0	0	0	0.024354	1	523	523		57.811	9.8957	1	5464.4	+		7804	33354	5047	5062	9386	9386					0.01069757452387421
DLVEYFGE	8	Unmodified	_DLVEYFGE_					0	0	0		ENST00000506381.1_1_4:169519393-169519789:-|nuORF	ENST00000506381.1_1_4:169519393-169519789:-|nuORF	ENST00000506381.1_1_4:169519393-169519789:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2816162109375	2	486.221465	970.428378	-0.25968	-0.00012626	3.7242	0.0018108	3.4645	0.0016845	486.22348588081536	89.476	0.12524	89.492	89.428	89.553	0.015907					4	2	2	0	0	0	0.027866	1	11218	11218		19.36	7.849	1	55612			7805	15740	5048	5063	9387	9387					-0.05801906847318605
DLVFAFSVW	9	Unmodified	_DLVFAFSVW_					0	0	0		ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2789306640625	2	542.279118	1082.54368	-0.53315	-0.00028911	-0.20257	-0.00010985	-0.73572	-0.00039896	542.2789101048246	63.679	1.4999	63.428	63.084	64.584	-0.25141					105	40	4	0	0	0	0.55828	1	7440	7440		55.504	0	1	10446000			7806	6978	5049	5064	9388	9388					0.005712420743293478
DLVGIVFVA	9	Unmodified	_DLVGIVFVA_					0	0	0			REV__ENSG00000121797|ENST00000399036|CCRL2	REV__ENSG00000121797|ENST00000399036|CCRL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.73138427734375	2	466.776211	931.537869	0.65061	0.00030369	3.7547	0.0017526	4.4053	0.0020563	466.77769969560643	60.144	0.85886	59.947	59.613	60.472	-0.19742					33	21	2	0	0	0	0.024418	1	6728	6728		37.028	0	1	90231	+		7807	22610	5050	5065	9389	9389					0.06936143562666075
DLVHLSSLI	9	Unmodified	_DLVHLSSLI_					0	0	0		chr2:191346282-191346848|190|23.29|0.29|6.35|+|1|MYO1B,None|2	chr2:191346282-191346848|190|23.29|0.29|6.35|+|1|MYO1B,None|2	chr2:191346282-191346848|190|23.29|0.29|6.35|+|1|MYO1B,None|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7894287109375	2	498.78985	995.565146	-0.0052508	-2.6191E-06	0.20797	0.00010373	0.20271	0.00010111	498.7897231213052	68.54	0.83839	68.54	68.256	69.094	0					62	21	4	0	0	0	0.17455	1	8228	8228		94.006	14.067	1	1724400			7808	374	5051	5066	9390	9390					0.0671862710306641
DLVISDGSSLE	11	Unmodified	_DLVISDGSSLE_					0	0	0		ENST00000511381.1_1_5:138677603-138704484:+|nuORF;ENST00000510409.1_1_5:138699473-138700456:+|nuORF;ENSG00000120727|ENST00000265192|PAIP2	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.7833251953125	2	567.779876	1133.5452	4.4734	0.0025399	-0.39185	-0.00022249	4.0815	0.0023174	567.7794900159628	17.493	0.69401	17.554	17.209	17.903	0.06036					54	20	4	0	0	0	1.0238	1	157	157		31.53	2.3803	1	200990			7809	3835	5052	5067	9391	9391					-0.016232134182018854
DLVIVSILT	9	Unmodified	_DLVIVSILT_					0	0	0			REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.802490234375	2	486.802426	971.590298	0.071053	3.4589E-05	0.16579	8.0705E-05	0.23684	0.00011529	486.80213940177424	88.61	0.98146	88.626	88.193	89.174	0.015915					55	22	4	0	0	0	0.62163	1	11096	11096		51.335	12.083	1	515090	+		7810	28962	5053	5068	9392	9392					0.10336681905619116
DLVKKREM	8	Unmodified	_DLVKKREM_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7493896484375	2	509.789327	1017.5641	-1.0097	-0.00051474	-2.6887	-0.0013707	-3.6984	-0.0018854	509.78779280377057	30.236	0.87212	30.31	29.92	30.792	0.074314					46	20	3	0	0	0	0.027866	1	1819	1819		30.504	0	1	440750	+		7811	28501	5054	5069	9393	9393					0.056020894625021356
DLVKKYIL	8	Unmodified	_DLVKKYIL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475276-40475366:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.3145446777344	2	496.312961	990.611368	-0.56994	-0.00028287	0.38518	0.00019117	-0.18476	-9.1697E-05	496.31297899450504	54.734	0.83948	54.588	54.316	55.156	-0.14609					56	22	4	0	0	0	0.2917	1	5846	5846		115.46	41.484	1	4906100			7812	7843	5055	5070	9394	9394					0.11568692005130288
DLVKKYIL	8	Unmodified	_DLVKKYIL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475276-40475366:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.3144836425781	2	496.312961	990.611368	-0.058561	-2.9064E-05	-0.45249	-0.00022458	-0.51105	-0.00025364	496.31256107587694	54.85	0.8393	54.619	54.351	55.19	-0.23087					58	23	4	0	0	0	0.2917	1	5856	5856		115.46	41.484	1	4012600			7813	7843	5055	5070	9395	9395					0.11568692005130288
DLVKKYIL	8	Unmodified	_DLVKKYIL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475276-40475366:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.31396484375	2	496.312961	990.611368	0.65826	0.0003267	-0.99145	-0.00049207	-0.33319	-0.00016536	496.31229858996267	54.81	0.82725	54.604	54.318	55.145	-0.20613					60	22	4	0	0	0	0.2917	1	5849	5849		115.46	46.974	1	4004400			7814	7843	5055	5070	9396	9396					0.11568692005130288
DLVKRQKVS	9	Unmodified	_DLVKRQKVS_					0	0	0			REV__nc|ENSG00000137941|Q6ZT98-3|TTLL7;REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.311767578125	2	536.827298	1071.64004	0.66909	0.00035919	-1.495	-0.00080253	-0.82586	-0.00044335	536.8267751301298	97.33	0.84799	97.206	96.84	97.688	-0.12368					30	18	2	0	0	0	0.024397	1	12035	12035		39.253	0	1	60668	+		7815	23796;33416	5056	5071	9397	9397					0.10708809634297722
DLVLEMCN	8	Unmodified	_DLVLEMCN_					0	0	0		nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13;ENST00000512009.5_1_5:64960022-64960435:+|nuORF	nc|ENSG00000113597|A5PLN9-2|TRAPPC13	nc|ENSG00000113597|A5PLN9-2|TRAPPC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.268310546875	2	468.711896	935.409239	-1.3325	-0.00062456	1.3702	0.00064223	0.037688	1.7665E-05	468.7125024805406	60.36	0.40814	60.439	60.203	60.611	0.078884					15	10	2	0	0	0	0.027866	1	6870	6870		30.504	6.3009	1	186070			7816	3310	5057	5072	9398	9398					-0.061049027342505724
DLVLGIGAVA	10	Unmodified	_DLVLGIGAVA_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.27874755859375	2	464.279118	926.543683	-0.19628	-9.1128E-05	0.3071	0.00014258	0.11082	5.1453E-05	464.27917818405325	81.014	1.324	81.038	80.656	81.98	0.023903					66	32	3	0	0	0	0.84306	1	10032	10032		57.811	1.0902	1	3248100	+		7817	23808	5058	5073	9399	9399					0.07747242074333371
DLVLRHKY	8	Unmodified	_DLVLRHKY_					0	0	0			REV__ENST00000336735.8_1_14:81961438-81964252:-|nuORF	REV__ENST00000336735.8_1_14:81961438-81964252:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2799072265625	2	522.303458	1042.59236	-1.5822	-0.00082641	-2.5088	-0.0013103	-4.091	-0.0021368	522.3020459808258	38.336	0.58727	38.336	38.134	38.721	0					31	15	3	0	0	0	0.027866	1	3260	3260		25.45	0	1	1828700	+		7818	30551	5059	5074	9400	9400					0.07277155434076121
DLVNGLVALM	10	Unmodified	_DLVNGLVALM_					0	0	0		ENST00000497604.1_1_2:106710484-106717684:-|nuORF;nc|ENSG00000115652|Q8NBZ7-3|UXS1;nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1	ENST00000497604.1_1_2:106710484-106717684:-|nuORF	ENST00000497604.1_1_2:106710484-106717684:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8126220703125	2	522.791535	1043.56852	-0.16125	-8.4299E-05	-1.3588	-0.00071039	-1.5201	-0.00079469	522.7899564623356	41.92	0.23035	41.946	41.857	42.088	0.026012					11	6	2	0	0	0	0.03519	1	3775	3775		18.262	7.3965	1	189770			7819	3477	5060	5075	9401	9401					0.048475538854063416
DLVPHVILEP	10	Unmodified	_DLVPHVILEP_					0	0	0			REV__nc|ENSG00000213995|Q8IW45-2|NAXD	REV__nc|ENSG00000213995|Q8IW45-2|NAXD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.3224487304688	2	566.324057	1130.63356	0.46208	0.00026169	-3.6634	-0.0020747	-3.2014	-0.001813	566.3219869268645	106.01	0.50353	105.85	105.65	106.16	-0.16132					58	22	4	0	0	0	1.089	1	13202	13202		34.173	2.6427	1	515910	+		7820	37129	5061	5076	9402	9402					0.07346871682898382
DLVPLPLF	8	Unmodified	_DLVPLPLF_					0	0	0			REV__ENST00000607190.1_1_2:20101816-20101957:+|nuORF	REV__ENST00000607190.1_1_2:20101816-20101957:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2586364746094	2	457.273304	912.532055	0.28303	0.00012942	-2.1068	-0.00096339	-1.8238	-0.00083397	457.27237054748474	61.471	0.2187	61.244	61.118	61.336	-0.22663					7	5	2	0	0	0	0.027866	1	7078	7078		19.36	0	1	86083	+		7821	35945	5062	5077	9403	9403					0.07229045051008143
DLVQRILTSA	10	Unmodified	_DLVQRILTSA_					0	0	0			REV__nc|ENSG00000183049|Q8IU85-2|CAMK1D	REV__nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.3230590820312	2	558.324588	1114.63462	1.0696	0.00059718	-0.94284	-0.00052641	0.12675	7.0768E-05	558.3240449933329	98.769	1.2313	98.645	98.241	99.472	-0.12414					51	30	3	0	0	0	1.0719	1	12228	12228		36.447	7.2767	1	217700	+		7822	27531	5063	5078	9404	9404					0.081890860518115
DLVRRCITR	9	Unmodified	_DLVRRCITR_					0	0	0		nc|ENSG00000147689|Q86UY5-3|FAM83A;ENST00000521468.1_1_8:124195447-124212099:+|nuORF;nc|ENSG00000147689|Q86UY5-2|FAM83A;ENSG00000147689|ENST00000690554|FAM83A	nc|ENSG00000147689|Q86UY5-3|FAM83A	nc|ENSG00000147689|Q86UY5-3|FAM83A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.322021484375	2	566.324399	1130.63425	0.070964	4.0189E-05	-3.8873	-0.0022015	-3.8163	-0.0021613	566.322303110478	105.93	0.62749	105.81	105.51	106.13	-0.12381					61	22	4	0	0	0	0.77768	1	13207	13207		40.778	4.3314	1	622550			7823	18365	5064	5079	9405	9405					0.07415387850937805
DLVSGAKKAGI	11	Unmodified	_DLVSGAKKAGI_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7852172851562	2	529.813856	1057.61316	-0.61023	-0.00032331	0.28414	0.00015054	-0.3261	-0.00017277	529.8139151668202	53.557	0.56926	53.557	53.337	53.907	0					41	15	4	0	0	0	0.024752	1	5788	5788		19.104	0	1	1672000			7824	9530	5065	5080	9406	9406					0.08665701023096517
DLVSTIFAKV	10	Unmodified	_DLVSTIFAKV_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2979125976562	2	546.818607	1091.62266	-0.98659	-0.00053948	-0.090473	-4.9472E-05	-1.0771	-0.00058896	546.8186990381406	55.389	0.37408	55.243	54.948	55.322	-0.14609					15	10	2	0	0	0	0.03519	1	5951	5951		45.972	14.442	1	105060	+		7825	26705	5066	5081	9407	9407					0.08051469308611559
DLVVKKEL	8	Unmodified	_DLVVKKEL_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2951354980469	2	472.294768	942.574983	-0.075998	-3.5893E-05	0.69201	0.00032683	0.61601	0.00029094	472.29489678216316	40.73	1.2341	40.505	40.004	41.239	-0.225					74	32	4	0	0	0	0.2677	1	3540	3540		125.81	12.402	1	4983700			7826	9251	5067	5082	9408	9408					0.10139815108436778
DLVVVRVLA	9	Unmodified	_DLVVVRVLA_					0	0	0			REV__ENSG00000187372|ENST00000341948|PCDHB13	REV__ENSG00000187372|ENST00000341948|PCDHB13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3070068359375	2	492.316035	982.617516	-0.099484	-4.8978E-05	-1.878	-0.00092455	-1.9775	-0.00097353	492.3152474797244	101.92	1.2396	101.93	101.09	102.33	0.0073471					38	28	2	0	0	0	0.024436	1	12934	12934		30.504	1.3541	1	152580	+		7827	27930	5068	5083	9409	9409					0.1255121023666561
DLVYFTLI	8	Unmodified	_DLVYFTLI_					0	0	0		GDPD5|p.S507Y|1|0.22|ENSG00000158555|chr11:75439915-75439915|G/T|missense_variant	GDPD5|p.S507Y|1|0.22|ENSG00000158555|chr11:75439915-75439915|G/T|missense_variant	GDPD5|p.S507Y|1|0.22|ENSG00000158555|chr11:75439915-75439915|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.8193664550781	2	492.276044	982.537535	2.4241	0.0011933	1.5202	0.00074838	3.9443	0.0019417	492.2765022214501	18.505	0.24321	18.505	18.431	18.674	0					7	4	2	0	0	0	0.027866	1	291	291		13.775	0	1	10701			7828	17676	5069	5084	9410	9410					0.04556723842813426
DLWAGSKGK	9	Unmodified	_DLWAGSKGK_					0	0	0		ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-2|MIA2	ENSG00000150527|ENST00000640607|MIA2	ENSG00000150527|ENST00000640607|MIA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2746276855469	2	481.258717	960.50288	-0.80173	-0.00038584	0.73771	0.00035503	-0.06402	-3.081E-05	481.25885096249414	59.803	0.85412	59.882	59.611	60.465	0.078888					57	22	4	0	0	0	0.024374	1	6818	6818		40.778	2.9666	1	1687800			7829	6141	5070	5085	9411	9411					0.021049007547162546
DLWKIYSN	8	Unmodified	_DLWKIYSN_					0	0	0			REV__nc|ENSG00000144959|Q6PIU2-3|NCEH1	REV__nc|ENSG00000144959|Q6PIU2-3|NCEH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7748413085938	2	519.766374	1037.5182	0.021093	1.0963E-05	-3.7229	-0.0019351	-3.7019	-0.0019241	519.764134655124	42.924	0.61943	42.955	42.609	43.228	0.03056					26	16	2	0	0	0	0.027866	1	3959	3959		27.882	0	1	172320	+		7830	24376	5071	5086	9412	9412					0.0009376755190260155
DLWKVCKA	8	Unmodified	_DLWKVCKA_					0	0	0		ENST00000508553.1_1_5:10236514-10249985:-|nuORF	ENST00000508553.1_1_5:10236514-10249985:-|nuORF	ENST00000508553.1_1_5:10236514-10249985:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7793884277344	2	481.760038	961.505523	0.43187	0.00020806	2.1304	0.0010263	2.5622	0.0012344	481.760914285161	61.187	0.87569	61.187	60.768	61.643	0					36	22	3	0	0	0	0.027866	1	7009	7009		24.203	2.5004	1	631620			7831	15782	5072	5087	9413	9413					0.023230328880117668
DLWKVCKA	8	Unmodified	_DLWKVCKA_					0	0	0		ENST00000508553.1_1_5:10236514-10249985:-|nuORF	ENST00000508553.1_1_5:10236514-10249985:-|nuORF	ENST00000508553.1_1_5:10236514-10249985:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.760038	961.505523	0.11897	5.7313E-05	2.6092	0.001257	2.7282	0.0013143	481.7612527428041	61.398	0.51679	61.172	60.899	61.415	-0.22663	0.013252	0.00025842	NaN	21.96	30	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628610			7832	15782	5072	5087							0.023230328880117668
DLWKVCKA	8	Unmodified	_DLWKVCKA_					0	0	0		ENST00000508553.1_1_5:10236514-10249985:-|nuORF	ENST00000508553.1_1_5:10236514-10249985:-|nuORF	ENST00000508553.1_1_5:10236514-10249985:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.760038	961.505523	-0.20746	-9.9948E-05	1.9243	0.00092707	1.7169	0.00082712	481.7612329976893	61.045	0.64123	61.116	60.871	61.512	0.071129	-0.042153	-0.00040147	NaN	21.96	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622310			7833	15782	5072	5087							0.023230328880117668
DLWNLEDDTHL	11	Unmodified	_DLWNLEDDTHL_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2845153808594	3	457.545613	1369.61501	0.077553	3.5484E-05	-2.4757	-0.0011328	-2.3982	-0.0010973	457.5443782456885	56.626	0.48325	56.626	56.388	56.872	0					35	13	3	0	0	0	0.024734	1	6303	6303		34.087	0	1	637060	+		7834	23724	5073	5088	9414	9414					-0.05501334749601483
DLWNLEDDTHL	11	Unmodified	_DLWNLEDDTHL_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2849426269531	3	457.545613	1369.61501	-0.10492	-4.8004E-05	-1.916	-0.00087664	-2.0209	-0.00092465	457.5445940039685	56.465	0.63033	56.563	56.283	56.913	0.097893					36	17	3	0	0	0	0.024765	1	6200	6200		33.039	5.3955	1	465530	+		7835	23724	5073	5088	9415	9415					-0.05501334749601483
DLWRALTDSYQ	11	Unmodified	_DLWRALTDSYQ_					0	0	0			REV__ENSG00000157093|ENST00000287748|LYZL4	REV__ENSG00000157093|ENST00000287748|LYZL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2704162597656	3	456.557853	1366.65173	-0.71027	-0.00032428	-1.7686	-0.00080747	-2.4789	-0.0011318	456.5568819845803	27.506	0.47188	27.338	27.057	27.528	-0.16816					16	10	2	0	0	0	0.024733	1	1530	1530		21.395	0	1	80681	+		7836	25110	5074	5089	9416	9416					-0.016930381330666933
DLWSAPSPE	9	Unmodified	_DLWSAPSPE_					0	0	0		ENST00000467826.5_1_9:130570554-130576503:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS	ENST00000467826.5_1_9:130570554-130576503:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS	ENST00000467826.5_1_9:130570554-130576503:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.78472900390625	2	501.232364	1000.45018	0.010524	5.2748E-06	0.24282	0.00012171	0.25335	0.00012699	501.23232171244337	72.513	0.51111	72.236	72.028	72.539	-0.2769					13	11	2	0	0	0	0.024354	1	8480	8480		38.806	3.1879	1	46390			7837	14854;5062	5075	5090	9417	9417					-0.05003102098760337
DLWSLGVL	8	Unmodified	_DLWSLGVL_					0	0	0		ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7686462402344	2	451.752736	901.490919	-0.41529	-0.00018761	-3.2142	-0.001452	-3.6295	-0.0016396	451.7509975993735	35.209	0.99419	34.997	34.401	35.395	-0.21246					50	24	3	0	0	0	0.027866	1	2694	2694		24.203	0	1	205690			7838	1854	5076	5091	9418	9418					0.03623284011530359
DLYAVVYVL	9	Unmodified	_DLYAVVYVL_					0	0	0			REV__COG2|p.D519Y|1|0.27|ENSG00000135775|chr1:230687109-230687109|G/T|missense_variant	REV__COG2|p.D519Y|1|0.27|ENSG00000135775|chr1:230687109-230687109|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.31494140625	2	527.794601	1053.57465	0.09603	5.0684E-05	-2.2157	-0.0011695	-2.1197	-0.0011188	528.2947979826237	97.703	1.5415	97.712	97.326	98.868	0.0091095					44	35	2	0	0	0	0.024325	1	12414	12414		40.573	6.4001	1	82164	+		7839	19509	5077	5092	9419	9419					0.05000395388560719
DLYCVSAIAV	10	Unmodified	_DLYCVSAIAV_					0	0	0			REV__ENST00000373479.8_1_6:37321761-37321914:+|nuORF	REV__ENST00000373479.8_1_6:37321761-37321914:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.7660522460938	2	527.267893	1052.52123	-1.7463	-0.00092078	2.7589	0.0014547	1.0126	0.00053389	527.2693957217323	62.091	0.5668	62.091	61.796	62.362	0					22	17	2	0	0	0	0.87795	1	7237	7237		55.504	2.5675	1	1359100	+		7840	31257	5078	5093	9420	9420					-0.0029272538561144756
DLYIPKVTI	9	Unmodified	_DLYIPKVTI_					0	0	0		ENST00000555056.1_1_14:94770757-94780257:-|nuORF;ENSG00000170099|ENST00000341584|SERPINA6	ENST00000555056.1_1_14:94770757-94780257:-|nuORF	ENST00000555056.1_1_14:94770757-94780257:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3111572265625	2	531.3157	1060.61685	-0.42705	-0.0002269	0.90319	0.00047988	0.47614	0.00025298	531.31514875794	70.196	0.45816	69.928	69.662	70.121	-0.26725					17	10	2	0	0	0	0.024539	1	8165	8165		27.882	7.4004	1	133070			7841	16671	5079	5094	9421	9421					0.0889637079694694
DLYIRPNI	8	Unmodified	_DLYIRPNI_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7644958496094	2	502.282192	1002.54983	-0.47241	-0.00023728	-3.1737	-0.0015941	-3.6461	-0.0018314	502.2803599844985	32.04	0.8212	32.052	31.702	32.523	0.011799					37	20	4	0	0	0	0.027866	1	2123	2123		27.882	0	1	917630			7842	1985	5080	5095	9422	9422					0.048657603058586574
DLYLKPIQ	8	Unmodified	_DLYLKPIQ_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7747802734375	2	495.286943	988.559333	0.039908	1.9766E-05	-3.0421	-0.0015067	-3.0022	-0.0014869	495.2841428175549	50.064	0.68044	49.913	49.708	50.388	-0.1512					51	19	4	0	0	0	0.027866	1	5156	5156		50.025	11.218	1	3109000			7843	7717	5081	5096	9423	9423					0.0645952859136969
DLYLKPIQ	8	Unmodified	_DLYLKPIQ_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.286943	988.559333	0.12307	6.0957E-05	-3.0805	-0.0015257	-2.9575	-0.0014648	495.2841405542209	49.861	1.0185	49.861	49.656	50.675	0	-0.01004	-0.00025643	NaN	50.025	61	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3378300			7844	7717	5081	5096							0.0645952859136969
DLYLKPIQ	8	Unmodified	_DLYLKPIQ_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.286943	988.559333	-0.52316	-0.00025911	-2.2567	-0.0011177	-2.7799	-0.0013768	495.28439393514543	49.766	0.6832	49.84	49.654	50.337	0.074192	-0.031415	0.00055962	NaN	50.025	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2942100			7845	7717	5081	5096							0.0645952859136969
DLYLKYGDD	9	Unmodified	_DLYLKYGDD_					0	0	0		nc|ENSG00000291014|Q9Y6N3|CLCA3P	nc|ENSG00000291014|Q9Y6N3|CLCA3P	nc|ENSG00000291014|Q9Y6N3|CLCA3P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2608032226562	2	551.258579	1100.50261	-0.48189	-0.00026564	-2.1051	-0.0011605	-2.587	-0.0014261	551.2565540350301	91.364	0.63548	91.24	90.994	91.629	-0.12341					23	14	2	0	0	0	0.024261	1	11224	11224		30.318	0	1	106730			7846	18835	5082	5097	9424	9424					-0.043625637557852315
DLYPDWEL	8	Unmodified	_DLYPDWEL_					0	0	0			REV__ENSG00000143195|ENST00000271417|ILDR2	REV__ENSG00000143195|ENST00000271417|ILDR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.724365234375	2	525.742565	1049.47058	0.2206	0.00011598	0.91373	0.00048038	1.1343	0.00059636	525.7430645617746	89.145	0.49645	89.008	88.777	89.273	-0.13761					18	11	2	0	0	0	0.027866	1	10910	10910		26.796	0	1	87225	+		7847	24210	5083	5098	9425	9425					-0.05217931438960477
DLYQTLYVD	9	Unmodified	_DLYQTLYVD_					0	0	0		ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.3235473632812	2	565.274229	1128.53391	-0.83697	-0.00047311	-2.5937	-0.0014661	-3.4307	-0.0019393	565.272514766588	62.292	0.31626	62.052	61.791	62.107	-0.23926					12	8	2	0	0	0	0.02435	1	7222	7222		34.173	0	1	310560			7848	10152	5084	5099	9426	9426					-0.025219907217206128
DLYRLYILMHL	11	Unmodified	_DLYRLYILMHL_					0	0	0			REV__ENST00000514672.1_1_5:81605958-81614116:+|nuORF	REV__ENST00000514672.1_1_5:81605958-81614116:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.78790283203125	3	483.935607	1448.78499	-0.46292	-0.00022402	-0.39522	-0.00019126	-0.85814	-0.00041528	483.93679660766196	43.119	0.77721	42.893	42.636	43.413	-0.22597					29	20	2	0	0	0	0.024845	1	3899	3899		10.104	0	1	503880	+		7849	34179	5085	5100	9427	9427					0.07855109719093889
DLYRMLIIQR	10	Unmodified	_DLYRMLIIQR_					0	0	0		ENST00000372134.5_1_10:85912629-85912848:+|nuORF	ENST00000372134.5_1_10:85912629-85912848:+|nuORF	ENST00000372134.5_1_10:85912629-85912848:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2275695800781	3	440.920069	1319.73838	-0.35911	-0.00015834	2.9614	0.0013057	2.6023	0.0011474	440.921324058172	34.937	0.48057	34.987	34.682	35.162	0.050255					19	12	2	0	0	0	0.03519	1	2560	2560		32.751	4.1738	1	81096			7850	13027	5086	5101	9428	9428					0.0912966988782955
DLYSQISSV	9	Unmodified	_DLYSQISSV_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT;ENST00000565671.1_1_16:8839919-8854000:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.25518798828125	2	506.253297	1010.49204	-0.31049	-0.00015719	0.085035	4.3049E-05	-0.22545	-0.00011414	506.25315495588023	56.375	0.79237	56.218	55.933	56.725	-0.15656					51	19	4	0	0	0	0.32811	1	6096	6096		71.877	0	1	1806900			7851	9190	5087	5102	9429	9429					-0.012785464102194055
DLYSQISSV	9	Unmodified	_DLYSQISSV_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT;ENST00000565671.1_1_16:8839919-8854000:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.2584228515625	2	506.253297	1010.49204	-0.23666	-0.00011981	0.076885	3.8923E-05	-0.15978	-8.0888E-05	506.2531924631687	56.491	1.1196	56.266	55.842	56.961	-0.22479					56	28	4	0	0	0	0.2508	1	6095	6095		82.241	10.363	1	2231900			7852	9190	5087	5102	9430	9430					-0.012785464102194055
DLYTRFDTL	9	Unmodified	_DLYTRFDTL_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.287353515625	2	572.287671	1142.56079	0.25515	0.00014602	-1.8183	-0.0010406	-1.5631	-0.00089456	572.2872081280054	71.269	1.0197	70.997	70.571	71.59	-0.27221					66	23	4	0	0	0	0.013337	4	8302	8290;8302;8313;8327		176.44	79.474	1	2870700			7853	1247	5088	5103	9431;9432;9433;9434	9432					-0.004788821105421448
DLYTRFDTL	9	Unmodified	_DLYTRFDTL_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2877197265625	2	572.287671	1142.56079	0.017691	1.0124E-05	-1.4927	-0.00085424	-1.475	-0.00084412	572.2874745622387	71.195	0.91258	70.938	70.651	71.564	-0.25713					75	21	5	0	0	0	0.016542	2	8317	8305;8317		154.12	66.364	1	3131800			7854	1247	5088	5103	9435;9436	9436					-0.004788821105421448
DLYTRFDTL	9	Unmodified	_DLYTRFDTL_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2871704101562	2	572.287671	1142.56079	0.62113	0.00035546	-2.081	-0.001191	-1.4599	-0.00083549	572.2870486423358	71.105	0.88786	70.891	70.563	71.451	-0.21425					66	20	4	0	0	0	0.013924	4	8272	8272;8283;8296;8304		167.23	71.786	1	2874800			7855	1247	5088	5103	9437;9438;9439;9440	9437					-0.004788821105421448
DLYYDVQV	8	Unmodified	_DLYYDVQV_					0	0	0			REV__ENSG00000167701|ENST00000394955|GPT	REV__ENSG00000167701|ENST00000394955|GPT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8173828125	2	507.742565	1013.47058	0.32689	0.00016597	-0.086251	-4.3794E-05	0.24064	0.00012218	507.7421699521128	68.385	0.60459	68.155	67.875	68.48	-0.23048					51	14	5	0	0	0	0.027866	1	7920	7920		29.15	0	1	676580	+		7856	26181	5089	5104	9441	9441					-0.03561931438946431
DLYYEDDTT	9	Unmodified	_DLYYEDDTT_					0	0	0			REV__ENSG00000110723|ENST00000265843|EXPH5	REV__ENSG00000110723|ENST00000265843|EXPH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.75439453125	2	567.727309	1133.44006	0.26506	0.00015048	-2.6849	-0.0015243	-2.4198	-0.0013738	567.7256330652981	50.644	0.4782	50.366	50.109	50.587	-0.27837					22	12	2	0	0	0	0.024262	1	5143	5143		38.806	0	1	642360	+		7857	21871	5090	5105	9442	9442					-0.12131754614665624
DMADLERLL	9	Unmodified	_DMADLERLL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2783203125	2	538.276249	1074.53795	-1.0728	-0.00057747	4.2752	0.0023012	3.2024	0.0017238	538.2786141712747	84.533	2.4334	84.559	84.075	86.509	0.026558					147	57	3	0	0	0	0.15029	1	10562	10562		99.375	0.74558	1	19436000			7858	1921	5091	5106	9443	9443					0.0036577550035872264
DMALKSLSL	9	Unmodified	_DMALKSLSL_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.27056884765625	2	489.270435	976.526318	0.40555	0.00019842	-1.3523	-0.00066166	-0.94678	-0.00046323	489.2695842116127	68.757	0.96937	68.515	68.072	69.041	-0.24278					40	23	3	0	0	0	0.071379	1	7981	7981		120.87	30.499	1	608940			7859	4929	5092	5107	9444	9444					0.03711578477009425
DMALKSLSL	9	Unmodified	_DMALKSLSL_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	489.270435	976.526318	-0.28587	-0.00013987	-4.4398	-0.0021723	-4.7257	-0.0023121	489.26779455660466	68.741	0.45605	68.741	68.56	69.016	0	0.16846	-0.0033772	NaN	120.87	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99462			7860	4929	5092	5107							0.03711578477009425
DMALKSLSL	9	Unmodified	_DMALKSLSL_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.270435	976.526318	-1.1707	-0.00057279	0.25463	0.00012458	-0.91607	-0.00044821	489.2703346357956	68.812	0.98452	68.551	68.142	69.126	-0.26165	-0.022099	0.0012164	NaN	120.87	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496730			7861	4929	5092	5107							0.03711578477009425
DMALKSLSL	9	Unmodified	_DMALKSLSL_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.270435	976.526318	0.40987	0.00020054	-1.3256	-0.00064857	-0.91571	-0.00044803	489.2696749397774	68.715	0.93739	68.484	68.116	69.054	-0.23048	-0.088282	-0.00032985	NaN	120.87	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527790			7862	4929	5092	5107							0.03711578477009425
DMAVNSNTNKK	11	Unmodified	_DMAVNSNTNKK_					0	0	0			REV__ENST00000492264.1_1_7:65615923-65617341:+|nuORF	REV__ENST00000492264.1_1_7:65615923-65617341:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	610.315185546875	2	611.298244	1220.58194	0.016436	1.0047E-05	-2.7497	-0.0016809	-2.7332	-0.0016708	611.29633068429	61.533	0.86883	61.307	60.743	61.611	-0.22663					36	22	3	0	0	0	0.024629	1	7100	7100		43.651	0	1	210740	+		7863	28968	5093	5108	9445	9445					-0.01953240073339657
DMAVVQTLR	9	Unmodified	_DMAVVQTLR_					0	0	0			REV__ENSG00000178597|ENST00000319098|PSAPL1	REV__ENSG00000178597|ENST00000319098|PSAPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3040771484375	2	516.778959	1031.54336	-0.32526	-0.00016809	1.6116	0.00083285	1.2864	0.00066476	516.7774208329147	60.326	0.54404	60.15	59.777	60.322	-0.1761					45	13	5	0	0	0	0.02435	1	6726	6726		26.693	3.6504	1	1007400	+		7864	27193	5094	5109	9446	9446					0.02885499082822207
DMAYTFKL	8	Unmodified	_DMAYTFKL_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.77496337890625	2	494.744053	987.473554	0.46032	0.00022774	-1.6548	-0.00081871	-1.1945	-0.00059097	494.74257750177946	49.639	0.65337	49.639	49.399	50.052	0					25	17	2	0	0	0	0.027866	1	5144	5144		63.306	0	1	258080	+		7865	27537	5095	5110	9447	9447					-0.02068379585796265
DMCDFINHV	9	Unmodified	_DMCDFINHV_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2755737304688	2	547.225702	1092.43685	-0.52268	-0.00028602	1.4473	0.00079199	0.9246	0.00050596	547.2264086724572	73.513	0.34647	73.248	73.099	73.445	-0.26479					13	8	2	0	0	0	0.024323	1	8634	8634		27.882	14.923	1	153320	+		7866	27378	5096	5111	9448	9448					-0.10566999474008298
DMCVAPSC	8	Unmodified	_DMCVAPSC_					0	0	0			REV__ENST00000378952.7_1_10:12209703-12222485:-|nuORF	REV__ENST00000378952.7_1_10:12209703-12222485:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.1510009765625	2	413.150617	824.286681	0.30815	0.00012731	0.093362	3.8573E-05	0.40152	0.00016589	413.1508417125863	81.516	0.96786	81.287	80.98	81.948	-0.2289					61	22	4	0	0	0	1.0574	1	9814	9814		26.796	0	1	1506100	+		7867	25906	5097	5112	9449	9449					-0.13249062737315853
DMDKAIKET	9	Unmodified	_DMDKAIKET_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5;ENST00000546394.1_1_12:112280306-112308075:+|nuORF	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3048095703125	2	525.760432	1049.50631	0.45735	0.00024045	-2.8037	-0.0014741	-2.3463	-0.0012336	525.7586745385744	70.108	0.61353	69.815	69.386	70	-0.29291					24	14	2	0	0	0	0.024427	1	8408	8408		34.173	3.6689	1	289690			7868	1889	5098	5113	9450	9450					-0.0164621725359666
DMDNKRQYNRY	11	Unmodified	_DMDNKRQYNRY_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.3025817871094	3	501.565013	1501.67321	-0.23441	-0.00011757	-0.13841	-6.942E-05	-0.37282	-0.00018699	501.56487024909984	24.792	0.47213	24.577	24.336	24.809	-0.2151					21	10	3	0	0	0	0.02483	1	1128	1128		15.337	0	1	76947	+		7869	26426	5099	5114	9451	9451					-0.05755976375985483
DMDNKRQYNRY	11	Unmodified	_DMDNKRQYNRY_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	501.565013	1501.67321	1.7991	0.00090238	-2.8077	-0.0014082	-1.0086	-0.00050587	501.5635848241855	24.602	0.30619	24.421	24.198	24.504	-0.18089	-0.060937	-0.0028496	NaN	15.337	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24758	+		7870	26426	5099	5114							-0.05755976375985483
DMDSYTNVY	9	Unmodified	_DMDSYTNVY_					0	0	0		ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1;ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000166840|ENST00000532726|GLYATL1;ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000166840|ENST00000532726|GLYATL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.2167358398438	2	554.218597	1106.42264	0.082907	4.5948E-05	-3.3562	-0.0018601	-3.2733	-0.0018141	554.2166455693526	70.185	0.56652	69.97	69.646	70.213	-0.21425					51	13	5	0	0	0	1.0019	1	8186	8186		19.997	1.6724	1	4629200			7871	7614;10888	5100	5115	9452	9452					-0.1263137342129994
DMDTCFSVR	9	Unmodified	_DMDTCFSVR_					0	0	0			REV__ENSG00000105655|ENST00000338128|ISYNA1	REV__ENSG00000105655|ENST00000338128|ISYNA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2586059570312	2	537.223159	1072.43177	-1.0509	-0.00056456	-2.8184	-0.0015141	-3.8693	-0.0020787	537.7241543892787	53.682	0.10937	53.535	53.456	53.566	-0.14724					4	2	2	0	0	0	0.024427	1	5787	5787		34.173	12.213	1	31287	+		7872	21550	5101	5116	9453	9453					-0.10155303336637189
DMDTFFLHY	9	Unmodified	_DMDTFFLHY_					0	0	0		TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	594.2918701171875	2	594.755149	1187.49575	0.067596	4.0203E-05	0.56034	0.00033326	0.62794	0.00037347	594.755220523127	84.501	0.55585	84.363	84.064	84.62	-0.13789					21	12	2	0	0	0	0.024506	1	10191	10191		30.504	0	1	227400			7873	2559	5102	5117	9454	9454					-0.09050199908028844
DMDVLVRVS	9	Unmodified	_DMDVLVRVS_					0	0	0			REV__ENST00000583655.5_1_17:73127559-73127802:-|nuORF	REV__ENST00000583655.5_1_17:73127559-73127802:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2699584960938	2	517.270967	1032.52738	-0.33559	-0.00017359	-2.0428	-0.0010567	-2.3784	-0.0012303	517.2699524708165	28.212	0.87427	28.06	27.61	28.484	-0.15195					69	21	4	0	0	0	0.20967	2	1611	1611;1625		87.754	4.4609	1	1847600	+		7874	22820	5103	5118	9455;9456	9455					0.01241792845917189
DMDWAESE	8	Unmodified	_DMDWAESE_					0	0	0			REV__ENST00000583273.5_1_17:56603775-56606703:-|nuORF	REV__ENST00000583273.5_1_17:56603775-56606703:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.271240234375	2	491.676565	981.338577	-0.16154	-7.9425E-05	-0.97717	-0.00048045	-1.1387	-0.00055988	491.6754959165208	33.964	0.35239	33.964	33.816	34.168	0					11	8	2	0	0	0	0.027866	1	2491	2491		19.36	2.8868	1	44954	+		7875	35550	5104	5119	9457	9457					-0.15283904518207692
DMEKLEVGF	9	Unmodified	_DMEKLEVGF_					0	0	0			REV__ENSG00000176746|ENST00000379034|MAGEB6	REV__ENSG00000176746|ENST00000379034|MAGEB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.276123046875	2	534.257525	1066.5005	-0.45186	-0.00024141	2.9017	0.0015502	2.4498	0.0013088	534.7607933928186	52.202	0.14599	52.018	51.927	52.073	-0.18404					5	3	2	0	0	0	0.024477	1	5395	5395		20.947	0	1	40531	+		7876	27043	5105	5120	9458	9458					-0.0300931576525727
DMELSQVTH	9	Unmodified	_DMELSQVTH_					0	0	0			REV__ENST00000395181.2_1_2:190176192-190176438:-|nuORF	REV__ENST00000395181.2_1_2:190176192-190176438:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2408447265625	2	530.242406	1058.47026	-0.098714	-5.2342E-05	-2.6719	-0.0014167	-2.7706	-0.0014691	530.2408927350496	110.12	1.4041	110.13	109.79	111.2	0.0059204					101	50	3	0	0	0	0.87448	1	13881	13881		34.173	5.0025	1	137900	+		7877	31690	5106	5121	9459	9459					-0.05663674430456922
DMERRVGPR	9	Unmodified	_DMERRVGPR_					0	0	0			REV__ENST00000383836.7_2_3:9023445-9023574:-|nuORF	REV__ENST00000383836.7_2_3:9023445-9023574:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2928466796875	2	558.290556	1114.56656	-0.14545	-8.1204E-05	2.8943	0.0016158	2.7488	0.0015346	558.2919424052994	76.505	1.1825	76.237	75.665	76.848	-0.26807					54	28	3	0	0	0	0.247	1	9069	9069		82.75	20.643	1	1694600	+		7878	31559	5107	5122	9460	9460					0.013859379201676347
DMERRVGPR	9	Unmodified	_DMERRVGPR_					0	0	0			REV__ENST00000383836.7_2_3:9023445-9023574:-|nuORF	REV__ENST00000383836.7_2_3:9023445-9023574:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.292724609375	2	558.290556	1114.56656	0.032574	1.8186E-05	2.7778	0.0015508	2.8103	0.001569	558.2918253978403	76.44	1.1408	76.188	75.641	76.782	-0.25162					52	27	3	0	0	0	0.5973	1	9073	9073		52.937	0.63753	1	1562000	+		7879	31559	5107	5122	9461	9461					0.013859379201676347
DMERRVTT	8	Unmodified	_DMERRVTT_					0	0	0			REV__ENST00000366672.4_1_1:230417100-230417286:+|nuORF	REV__ENST00000366672.4_1_1:230417100-230417286:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.3073425292969	2	504.250566	1006.48658	0.0073805	3.7216E-06	-3.7052	-0.0018683	-3.6978	-0.0018646	504.24869661987793	69.515	0.90865	69.265	68.95	69.858	-0.25063					39	21	2	0	0	0	0.027866	1	8081	8081		23.042	0	1	178830	+		7880	30982	5108	5123	9462	9462					-0.01640548473699255
DMESGRKLI	9	Unmodified	_DMESGRKLI_					0	0	0			REV__ENSG00000129071|ENST00000429544|MBD4	REV__ENSG00000129071|ENST00000429544|MBD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.8213500976562	2	524.776416	1047.53828	0.18085	9.4904E-05	-0.03609	-1.8939E-05	0.14476	7.5965E-05	524.775019033407	48.129	1.1677	47.942	47.673	48.841	-0.18684					53	31	3	0	0	0	0.023239	1	4799	4799		84.916	16.129	1	928070	+		7881	23030	5109	5124	9463	9463					0.016411952202361135
DMEVNNSKFAE	11	Unmodified	_DMEVNNSKFAE_					0	0	0			REV__ENST00000515565.1_1_5:55135402-55135780:-|nuORF	REV__ENST00000515565.1_1_5:55135402-55135780:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2373352050781	3	428.523932	1282.54997	-0.64064	-0.00027453	-4.2345	-0.0018146	-4.8751	-0.0020891	428.5220263575526	29.705	0.40011	29.783	29.607	30.007	0.078344					18	9	2	0	0	0	0.024746	1	1806	1806		21.032	3.8655	1	122850	+		7882	34201	5110	5125	9464	9464					-0.08000652547093523
DMFIIKAV	8	Unmodified	_DMFIIKAV_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.7633972167969	2	468.764789	935.515025	0.23529	0.00011029	-0.036618	-1.7165E-05	0.19867	9.3129E-05	468.764572178634	72.205	0.82491	71.93	71.588	72.412	-0.27509					39	19	3	0	0	0	0.59392	1	8448	8448		76.847	2.33	1	1192900			7883	5431	5111	5126	9465	9465					0.0446880117353885
DMFIIKAV	8	Unmodified	_DMFIIKAV_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.7643127441406	2	468.764789	935.515025	0.48701	0.0002283	-0.44388	-0.00020808	0.04313	2.0218E-05	468.76441512878176	72.154	0.9575	71.892	71.598	72.556	-0.26199					44	22	4	0	0	0	0.71833	1	8463	8463		65.803	2.4969	1	1313700			7884	5431	5111	5126	9466	9466					0.0446880117353885
DMGPQSKT	8	Unmodified	_DMGPQSKT_					0	0	0			REV__CFAP43|p.K149T|1|0.45|ENSG00000197748|chr10:104214397-104214397|T/G|missense_variant	REV__CFAP43|p.K149T|1|0.45|ENSG00000197748|chr10:104214397-104214397|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.8520812988281	2	432.20001	862.385467	0.23335	0.00010085	-0.23464	-0.00010141	-0.0012857	-5.5569E-07	432.19979682947115	46.431	0.92796	46.482	46.096	47.024	0.051395					53	25	3	0	0	0	0.027866	1	4469	4469		15.642	0	1	1735300	+		7885	19297	5112	5127	9467	9467					-0.05123000176399728
DMGQRTSVN	9	Unmodified	_DMGQRTSVN_					0	0	0			REV__ENSG00000075618|ENST00000382361|FSCN1	REV__ENSG00000075618|ENST00000382361|FSCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7605285644531	2	504.232373	1006.45019	-1.4466	-0.00072943	2.0883	0.001053	0.64166	0.00032355	504.2332870891704	65.376	0.6989	65.172	64.856	65.555	-0.2047					42	16	4	0	0	0	0.024405	1	7451	7451		35.618	3.6634	1	613390	+		7886	20553	5113	5128	9468	9468					-0.05277425370400124
DMHSLLLQP	9	Unmodified	_DMHSLLLQP_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.271484375	2	527.273509	1052.53247	0.63967	0.00033728	-0.82222	-0.00043354	-0.18255	-9.6253E-05	527.2712476933875	82.241	1.4543	82.131	81.441	82.895	-0.11006					56	34	3	0	0	0	0.45795	1	10233	10233		62.107	1.1355	1	6518300			7887	18125	5114	5129	9469	9469					0.008300967085688171
DMHSLLLQP	9	Unmodified	_DMHSLLLQP_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.2716064453125	2	527.273509	1052.53247	-0.19578	-0.00010323	-0.35706	-0.00018827	-0.55284	-0.0002915	527.2717259130405	82.082	1.413	82.108	81.331	82.744	0.025711					48	33	2	0	0	0	0.34489	1	10169	10169		69.628	0.8408	1	6481500			7888	18125	5114	5129	9470	9470					0.008300967085688171
DMHWHRGEAET	11	Unmodified	_DMHWHRGEAET_					0	0	0			REV__ENSG00000012211|ENST00000599218|PRICKLE3	REV__ENSG00000012211|ENST00000599218|PRICKLE3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2876892089844	3	456.863171	1367.56768	-1.1903	-0.00054381	1.3011	0.00059444	0.11083	5.0635E-05	456.8637991750996	28.964	0.64927	28.719	28.406	29.055	-0.24524					19	14	2	0	0	0	0.024801	1	1760	1760		5.4129	2.7249	1	88385	+		7889	19943	5115	5130	9471	9471					-0.10139892501570102
DMIHELQFA	9	Unmodified	_DMIHELQFA_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2813720703125	2	552.263142	1102.51173	-0.22613	-0.00012488	2.3547	0.0013004	2.1286	0.0011755	552.2643974993788	61.906	0.75216	61.692	61.416	62.168	-0.21375					52	18	3	0	0	0	0.024381	1	6960	6960		45.952	10.334	1	4253900	+		7890	28263;19723	5116	5131	9472	9472					-0.035424936711251576
DMIINIWL	8	Unmodified	_DMIINIWL_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2;REV__PSMD1-ATP2C1|1|fusion;REV__nc|ENSG00000017260|P98194-8|ATP2C1	REV__PSMD1-ATP2C1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8036193847656	2	509.275521	1016.53649	-0.56418	-0.00028733	3.7527	0.0019112	3.1886	0.0016239	509.2774504264514	85.08	1.0387	85.023	84.442	85.481	-0.05761					45	24	2	0	0	0	0.027866	1	10601	10601		60.972	9.6365	1	245140	+		7891	37415;20281;36437	5117	5132	9473	9473					0.02888186202255838
DMILDQTKT	9	Unmodified	_DMILDQTKT_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.323974609375	2	532.768257	1063.52196	-0.6483	-0.0003454	-2.0697	-0.0011027	-2.718	-0.0014481	532.7651443843114	72.803	0.21043	72.803	72.614	72.825	0					6	4	2	0	0	0	0.024484	1	8850	8850		17.468	6.6025	1	31908			7892	3926	5118	5133	9474	9474					-0.007259307365302448
DMKAKQEAL	9	Unmodified	_DMKAKQEAL_					0	0	0		ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.269775390625	2	517.270967	1032.52738	-1.0749	-0.00055602	-0.27265	-0.00014103	-1.3476	-0.00069705	517.2706814517236	28.443	1.0719	28.198	27.593	28.665	-0.24524					52	25	3	0	0	0	0.14181	1	1662	1662		101.25	22.989	1	2173900			7893	1459	5119	5134	9475	9475					0.01241792845917189
DMKAKQEAL	9	Unmodified	_DMKAKQEAL_					0	0	0		ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	517.2703247070312	2	517.270967	1032.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.258	1	28.089	27.589	28.589	-0.16897								0	0	0	0.083731	1	1631	1631		96.034	13.283	1				7894	1459	5119	5134	9476	9476					0.01241792845917189
DMKAKQEAL	9	Unmodified	_DMKAKQEAL_					0	0	0		ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000071859|ENST00000393600|FAM50A	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	ENST00000481619.5_1_X:153672624-153677371:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	517.2713012695312	2	517.270967	1032.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.34	1	28.171	27.671	28.671	-0.16897								0	0	0	0.084717	1	1643	1643		95.815	19.041	1				7895	1459	5119	5134	9477	9477					0.01241792845917189
DMKEKVDEL	9	Unmodified	_DMKEKVDEL_					0	0	0			REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.2334594726562	2	553.773539	1105.53253	-0.42931	-0.00023774	-1.007	-0.00055767	-1.4364	-0.00079542	553.773083445155	86.156	1.0107	86.11	85.326	86.336	-0.045105					33	23	3	0	0	0	0.024277	1	10673	10673		59.931	5.1545	1	138100	+		7896	36845	5120	5135	9478	9478					-0.016019480821341858
DMKEKVDEL	9	Unmodified	_DMKEKVDEL_					0	0	0			REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.773539	1105.53253	0.64815	0.00035893	-2.7255	-0.0015093	-2.0773	-0.0011504	553.772095560521	86.149	0.60072	86.149	85.829	86.43	0	0.01074	-0.0011088	NaN	59.931	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162120	+		7897	36845	5120	5135							-0.016019480821341858
DMKEKVDEL	9	Unmodified	_DMKEKVDEL_					0	0	0			REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.773539	1105.53253	-0.94301	-0.00052221	-0.79411	-0.00043976	-1.7371	-0.00096197	553.7731891883329	86.132	0.80268	86.156	85.616	86.419	0.023666	0.01737	0.0010303	NaN	59.931	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103760	+		7898	36845	5120	5135							-0.016019480821341858
DMKGLDLTP	9	Unmodified	_DMKGLDLTP_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4;nc|ENSG00000169933|Q14CM0|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.288330078125	2	495.252243	988.489932	0.24594	0.0001218	-0.30723	-0.00015216	-0.061288	-3.0353E-05	495.251769006844	58.344	1.4953	58.436	58.05	59.545	0.091217					69	40	3	0	0	0	0.024477	1	6526	6526		27.882	4.8398	1	534860			7899	7992	5121	5136	9479	9479					-0.004772984197074948
DMKITVSLE	9	Unmodified	_DMKITVSLE_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2813720703125	2	518.273175	1034.5318	0.53675	0.00027818	-0.79613	-0.00041262	-0.25938	-0.00013443	518.271073124056	74.78	0.79678	74.597	74.267	75.064	-0.18279					40	18	4	0	0	0	0.02435	1	8819	8819		34.173	0	1	304710			7900	3273	5122	5137	9480	9480					0.015912572688193904
DMKNEKSF	8	Unmodified	_DMKNEKSF_					0	0	0			REV__ENSG00000198824|ENST00000361283|CHAMP1	REV__ENSG00000198824|ENST00000361283|CHAMP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.27490234375	2	499.734217	997.453881	0.70086	0.00035025	-0.64409	-0.00032187	0.056777	2.8373E-05	499.73362216846016	40.537	0.53329	40.425	40.347	40.881	-0.11223					20	14	2	0	0	0	0.027866	1	3543	3543		24.203	13.937	1	109400	+		7901	28489	5123	5138	9481	9481					-0.04494755596545019
DMKPGVSYV	9	Unmodified	_DMKPGVSYV_					0	0	0		ENST00000512959.1_1_4:55595508-55599400:+|nuORF;KIT|p.A755Pfs*10|1|0.21|ENSG00000157404|chr4:54731897-54731897|C/-|frameshift_variant;nc|ENSG00000157404|P10721-2|KIT;ENSG00000157404|ENST00000288135|KIT	ENST00000512959.1_1_4:55595508-55599400:+|nuORF	ENST00000512959.1_1_4:55595508-55599400:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.26251220703125	2	498.24696	994.479368	-0.40743	-0.000203	-0.87993	-0.00043842	-1.2874	-0.00064142	498.2464055465863	49.109	0.4524	48.927	48.738	49.19	-0.18206					21	11	3	0	0	0	0.0242	1	4908	4908		51.193	12.387	1	105490			7902	6594	5124	5139	9482	9482					-0.018092810741109133
DMKQKLLQ	8	Unmodified	_DMKQKLLQ_					0	0	0			REV__nc|ENSG00000169679|O43683-2|BUB1	REV__nc|ENSG00000169679|O43683-2|BUB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.29119873046875	2	502.283877	1002.5532	-0.39857	-0.0002002	-4.146	-0.0020825	-4.5446	-0.0022827	502.2818607053723	84.866	0.70602	84.891	84.704	85.41	0.025536					22	16	2	0	0	0	0.027866	1	10535	10535		26.693	0	1	217810	+		7903	26390	5125	5140	9483	9483					0.05202687088217317
DMKRCYRDA	9	Unmodified	_DMKRCYRDA_					0	0	0		nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.304443359375	2	579.26315	1156.51175	-0.69763	-0.00040411	-4.2533	-0.0024638	-4.9509	-0.0028679	579.2618833399026	76.92	0.59302	76.751	76.266	76.859	-0.16853					18	13	2	0	0	0	0.024495	1	9102	9102		26.693	7.5894	1	137820			7904	18407	5126	5141	9484	9484					-0.06024816942749567
DMKTKYFFF	9	Unmodified	_DMKTKYFFF_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.7991943359375	2	613.79936	1225.58417	-0.96171	-0.0005903	0.61301	0.00037627	-0.34869	-0.00021403	613.7995830058085	70.978	0.60995	70.706	70.493	71.103	-0.27184					30	13	3	0	0	0	0.28753	1	8280	8280		77.318	11.852	1	944870			7905	4332	5127	5142	9485	9485					-0.019601595975700548
DMKTKYFFF	9	Unmodified	_DMKTKYFFF_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.7988891601562	2	613.79936	1225.58417	0.32603	0.00020012	-0.32306	-0.00019829	0.0029743	1.8256E-06	613.7988709730425	70.839	0.60796	70.624	70.435	71.043	-0.21424					31	14	3	0	0	0	0.2508	2	8249	8249;8262		82.241	13.394	1	1215200			7906	4332	5127	5142	9486;9487	9486					-0.019601595975700548
DMKVITMEI	9	Unmodified	_DMKVITMEI_					0	0	0		ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.296630859375	2	540.277403	1078.54025	0.023626	1.2764E-05	0.43187	0.00023333	0.4555	0.00024609	540.2772134763247	58.843	1.4468	58.656	58.066	59.513	-0.18705					90	39	4	0	0	0	0.023842	1	6580	6580		58.23	0	1	2500700			7907	13554	5128	5143	9488	9488					0.0041248791380894545
DMKVITMEI	9	Unmodified	_DMKVITMEI_					0	0	0		ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.277403	1078.54025	-0.15872	-8.5755E-05	1.6207	0.00087561	1.4619	0.00078986	540.7798434611068	58.765	0.48208	58.583	58.228	58.71	-0.18133	0.0011331	0.0012049	NaN	95.815	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187790			7908	13554	5128	5143							0.0041248791380894545
DMKVITMEI	9	Unmodified	_DMKVITMEI_					0	0	0		ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	ENST00000396408.7_1_19:53911016-53911145:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.277403	1078.54025	-0.28194	-0.00015232	1.9242	0.0010396	1.6422	0.00088725	540.277547148874	58.905	0.6413	58.663	58.173	58.814	-0.24165	0.080838	0.0015329	NaN	95.815	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137070			7909	13554	5128	5143							0.0041248791380894545
DMLETLVPK	9	Unmodified	_DMLETLVPK_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.291259765625	2	523.283543	1044.55253	-0.41127	-0.00021521	-0.33317	-0.00017434	-0.74444	-0.00038955	523.2830579996402	56.988	0.23321	56.824	56.675	56.909	-0.16431					9	6	2	0	0	0	0.023817	1	6352	6352		51.335	0	1	120660			7910	1383	5129	5144	9489	9489					0.03203847648478586
DMLFTVASIL	10	Unmodified	_DMLFTVASIL_					0	0	0		nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant;ENSG00000188869|ENST00000359440|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.3534545898438	2	555.299193	1108.58383	0.85625	0.00047547	-2.4243	-0.0013462	-1.5681	-0.00087077	555.2975769168662	99.47	0.53412	99.346	99.145	99.679	-0.12458					20	14	2	0	0	0	0.03519	1	12374	12374		32.812	0	1	28405			7911	9762	5130	5145	9490	9490					0.03388420682586002
DMLILQRKI	9	Unmodified	_DMLILQRKI_					0	0	0		nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7646484375	2	565.341726	1128.6689	0.32091	0.00018143	-0.13997	-7.9129E-05	0.18095	0.0001023	565.3415184051323	76.799	0.76881	76.53	76.253	77.022	-0.26806					41	18	3	0	0	0	0.024457	1	9139	9139		29.15	0	1	499290			7912	1984	5131	5146	9491	9491					0.10971210939055709
DMLILQRKI	9	Unmodified	_DMLILQRKI_					0	0	0		nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.341726	1128.6689	-0.23907	-0.00013516	0.46412	0.00026239	0.22505	0.00012723	565.3415930334617	76.678	1.3616	76.678	76.391	77.752	0	-0.0052368	0.00015923	NaN	29.15	44	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374900			7913	1984	5131	5146							0.10971210939055709
DMLILQRKI	9	Unmodified	_DMLILQRKI_					0	0	0		nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.341726	1128.6689	-0.60193	-0.00034029	0.5818	0.00032892	-0.020123	-1.1376E-05	565.3418269679865	76.905	0.99881	76.676	76.402	77.401	-0.22843	-0.0072942	0.00029229	NaN	29.15	34	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351790			7914	1984	5131	5146							0.10971210939055709
DMLILQRKI	9	Unmodified	_DMLILQRKI_					0	0	0		nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-4|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	nc|ENSG00000092200|Q96KN7-6|RPGRIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.341726	1128.6689	-0.40174	-0.00022712	0.74829	0.00042304	0.34655	0.00019592	565.3419242407598	76.814	0.36874	76.828	76.532	76.9	0.013504	0.14382	0.00048054	NaN	29.15	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356960			7915	1984	5131	5146							0.10971210939055709
DMLIRQLL	8	Unmodified	_DMLIRQLL_					0	0	0		nc|ENSG00000119707|P49756-4|RBM25;nc|ENSG00000119707|P49756-2|RBM25;nc|ENSG00000119707|P49756-3|RBM25;ENSG00000119707|ENST00000261973|RBM25	nc|ENSG00000119707|P49756-4|RBM25	nc|ENSG00000119707|P49756-4|RBM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29461669921875	2	501.294245	1000.57394	-0.16241	-8.1415E-05	0.056776	2.8462E-05	-0.10563	-5.2954E-05	501.2941619709045	78.099	0.93408	77.837	77.399	78.333	-0.26202					43	21	4	0	0	0	0.30053	1	9308	9308		111.65	1.5284	1	1404400			7916	3758	5132	5147	9492	9492					0.07367277467881195
DMLIRQLL	8	Unmodified	_DMLIRQLL_					0	0	0		nc|ENSG00000119707|P49756-4|RBM25;nc|ENSG00000119707|P49756-2|RBM25;nc|ENSG00000119707|P49756-3|RBM25;ENSG00000119707|ENST00000261973|RBM25	nc|ENSG00000119707|P49756-4|RBM25	nc|ENSG00000119707|P49756-4|RBM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2940673828125	2	501.294245	1000.57394	0.52873	0.00026505	-0.653	-0.00032735	-0.12428	-6.2299E-05	501.29379022298485	78.046	0.63205	77.804	77.575	78.207	-0.24232					33	14	3	0	0	0	0.21344	2	9310	9301;9310		138.24	8.5596	1	1468500			7917	3758	5132	5147	9493;9494	9494					0.07367277467881195
DMLIRQLL	8	Unmodified	_DMLIRQLL_					0	0	0		nc|ENSG00000119707|P49756-4|RBM25;nc|ENSG00000119707|P49756-2|RBM25;nc|ENSG00000119707|P49756-3|RBM25;ENSG00000119707|ENST00000261973|RBM25	nc|ENSG00000119707|P49756-4|RBM25	nc|ENSG00000119707|P49756-4|RBM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2928771972656	2	501.294245	1000.57394	-0.46208	-0.00023164	-2.6535	-0.0013302	-3.1156	-0.0015618	501.29213734484836	77.729	1.1082	77.567	77.183	78.291	-0.16196					52	25	4	0	0	0	0.30053	2	9274	9274;9284		111.65	6.9017	1	1916200			7918	3758	5132	5147	9495;9496	9495					0.07367277467881195
DMLLACVTPD	10	Unmodified	_DMLLACVTPD_					0	0	0			REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2	REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.327880859375	2	539.251385	1076.48822	-0.99336	-0.00053567	1.2451	0.00067142	0.25173	0.00013575	539.2520251640902	82.06	0.24916	82.085	81.94	82.189	0.025711					8	5	2	0	0	0	0.03519	1	10142	10142		40.778	0	1	100110	+		7919	20319	5133	5148	9497	9497					-0.04696675499963021
DMLLLCTNAL	10	Unmodified	_DMLLLCTNAL_					0	0	0			REV__PTPN1|p.D229N|1|0.15|ENSG00000196396|chr20:50578612-50578612|G/A|missense_variant	REV__PTPN1|p.D229N|1|0.15|ENSG00000196396|chr20:50578612-50578612|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.782470703125	2	553.782853	1105.55115	-0.3182	-0.00017621	-0.2693	-0.00014914	-0.5875	-0.00032535	553.7827692018195	82.714	1.3291	82.714	82.363	83.692	0					49	30	2	0	0	0	0.94316	1	10361	10361		51.193	0	1	1396000	+		7920	37419	5134	5149	9498	9498					0.0025989028808908188
DMLVAHEDT	9	Unmodified	_DMLVAHEDT_					0	0	0			REV__FXR1|p.D514H|1|0.15|ENSG00000114416|chr3:180970295-180970295|G/C|missense_variant	REV__FXR1|p.D514H|1|0.15|ENSG00000114416|chr3:180970295-180970295|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7933959960938	2	515.729132	1029.44371	0.53701	0.00027695	3.7689	0.0019437	4.3059	0.0022207	515.7309852716508	71.182	2.0199	70.976	70.469	72.489	-0.20613					78	48	2	0	0	0	0.024405	1	8394	8394		20.947	0	1	393870	+		7921	36052	5135	5150	9499	9499					-0.06983363321796787
DMLYKIED	8	Unmodified	_DMLYKIED_					0	0	0		nc|ENSG00000170482|Q9UHI7-3|SLC23A1;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-2|SLC23A1;SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2689819335938	2	513.74425	1025.47395	-1.1429	-0.00058715	1.3803	0.00070914	0.23747	0.000122	513.7444464423774	79.991	0.12598	79.827	79.746	79.872	-0.16363					4	2	2	0	0	0	0.027866	1	9888	9888		57.811	2.3071	1	28655			7922	8047	5136	5151	9500	9500					-0.037770046565810844
DMMCRAAK	8	Unmodified	_DMMCRAAK_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.79827880859375	2	463.206258	924.397963	0.1457	6.749E-05	-3.6897	-0.0017091	-3.544	-0.0016416	463.204301723951	41.633	0.69113	41.633	41.396	42.087	0					27	19	2	0	0	0	0.027866	1	3766	3766		27.882	0	1	167220			7923	1130	5137	5152	9501	9501					-0.06726003309370299
DMMCRAAK	8	Unmodified	_DMMCRAAK_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.79827880859375	2	463.206258	924.397963	-0.2318	-0.00010737	-3.4422	-0.0015944	-3.674	-0.0017018	463.2045500911124	41.827	0.62829	41.695	41.421	42.049	-0.13219					25	17	2	0	0	0	0.027866	1	3777	3777		51.335	16.135	1	160430			7924	1130	5137	5152	9502	9502					-0.06726003309370299
DMNEKVGQI	9	Unmodified	_DMNEKVGQI_					0	0	0			REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3040771484375	2	517.252774	1032.491	-0.43338	-0.00022417	2.8065	0.0014517	2.3732	0.0012275	517.7542041773677	60.386	0.24308	60.21	60.037	60.28	-0.1761					6	5	2	0	0	0	0.024397	1	6726	6726		24.519	7.1542	1	78977	+		7925	28733	5138	5153	9503	9503					-0.023950840507950488
DMNIKAPKISM	11	Unmodified	_DMNIKAPKISM_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.23162841796875	3	416.554398	1246.64136	0.0091368	3.806E-06	2.6096	0.001087	2.6187	0.0010908	416.55555914000144	20.845	0.2423	20.678	20.494	20.736	-0.16774					5	4	2	0	0	0	0.024723	1	587	587		25.068	15.856	1	9910.7			7926	4084	5139	5154	9504	9504					0.027909396164886857
DMNPIVVV	8	Unmodified	_DMNPIVVV_					0	0	0		ENST00000525496.1_1_11:62105032-62105701:+|nuORF	ENST00000525496.1_1_11:62105032-62105701:+|nuORF	ENST00000525496.1_1_11:62105032-62105701:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.7410583496094	2	443.738771	885.462989	-0.28205	-0.00012516	4.4785	0.0019873	4.1964	0.0018621	443.7407610524949	22.455	1.5106	22.455	22.012	23.523	0					97	33	5	0	0	0	0.65272	1	773	773		71.378	5.5747	1	3563400			7927	16097	5140	5155	9505	9505					0.01567637759774243
DMPFIVVVAG	10	Unmodified	_DMPFIVVVAG_					0	0	0			REV__ENST00000395415.2_1_7:63391808-63391940:+|nuORF	REV__ENST00000395415.2_1_7:63391808-63391940:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2998046875	2	524.280803	1046.54705	-0.55557	-0.00029127	-2.8923	-0.0015164	-3.4479	-0.0018077	524.2790934013643	76.965	0.78603	76.737	76.444	77.23	-0.22843					31	18	2	0	0	0	0.03519	1	9436	9436		55.504	22.692	1	993630	+		7928	31698	5141	5156	9506	9506					0.025641688566793164
DMPIFMGLIGD	11	Unmodified	_DMPIFMGLIGD_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2375183105469	3	403.527849	1207.56172	-0.0018795	-7.5845E-07	-1.9401	-0.00078287	-1.9419	-0.00078362	403.5271674127068	30.293	0.40697	30.293	29.977	30.384	0					11	9	2	0	0	0	0.024748	1	1886	1886		13.508	2.4112	1	20281			7929	653	5142	5157	9507	9507					-0.03376127057481426
DMPLVDQELF	10	Unmodified	_DMPLVDQELF_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	402.8612365722656	3	402.861885	1205.56383	1.9984	0.00080507	-3.558	-0.0014334	-1.5596	-0.0006283	402.8602555058969	23.453	1.4811	23.53	23.156	24.637	0.076241					72	33	3	0	0	0	1.1161	1	902	902		30.569	1.0181	1	1143500			7930	5230	5143	5158	9508	9508					-0.03073375048052185
DMPNVIVKYY	10	Unmodified	_DMPNVIVKYY_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3143310546875	2	621.315374	1240.6162	0.018917	1.1754E-05	-3.0174	-0.0018748	-2.9985	-0.001863	621.3134783770568	66.633	3.4513	66.385	66.061	69.512	-0.24839					161	90	2	0	0	0	0.45367	2	7709	7663;7709		93.195	13.744	1	29011000	+		7931	36762	5144	5159	9509;9510	9510					0.005512080856078683
DMQARWTC	8	Unmodified	_DMQARWTC_					0	0	0			REV__ENST00000395876.6_1_22:50523614-50523686:-|nuORF	REV__ENST00000395876.6_1_22:50523614-50523686:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7138671875	2	505.712762	1009.41097	-0.54029	-0.00027323	3.1337	0.0015847	2.5934	0.0013115	505.7144135483818	29.07	1.2607	28.92	28.324	29.584	-0.14952					87	29	5	0	0	0	0.94517	1	1720	1720		45.952	0	1	1678400	+		7932	31718	5145	5160	9511	9511					-0.09335848925638857
DMQEVIGTA	9	Unmodified	_DMQEVIGTA_					0	0	0		SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1;ENST00000475225.5_1_2:219247091-219251606:+|nuORF;ENST00000492413.5_1_2:219247091-219251606:+|nuORF;ENST00000469449.1_1_2:219248824-219251606:+|nuORF;ENST00000465984.5_1_2:219247091-219251606:+|nuORF	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000465984.5_1_2:219247091-219251606:+|nuORF	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2828369140625	2	482.226225	962.437897	-2.2008	-0.0010613	1.8634	0.0008986	-0.33733	-0.00016267	482.226981784125	52.158	0.32936	51.889	51.725	52.054	-0.26903					13	8	2	0	0	0	0.022587	1	5365	5365		64.207	0	1	119260			7933	940;14801	5146	5161	9512	9512					-0.04482461833435991
DMQILEERQL	10	Unmodified	_DMQILEERQL_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;ENST00000602645.1_1_13:32828360-32839754:+|nuORF	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	637.8236694335938	2	637.824095	1273.63364	0.98941	0.00063107	-0.49394	-0.00031505	0.49547	0.00031602	637.8236303795746	98.996	1.0107	99.007	98.564	99.575	0.010239					21	15	2	0	0	0	1.1266	1	12625	12625		29.17	1.0886	1	93605			7934	1519	5147	5162	9513	9513					0.007765036205910292
DMQILLESK	9	Unmodified	_DMQILLESK_					0	0	0			REV__ENSG00000102781|ENST00000380615|KATNAL1	REV__ENSG00000102781|ENST00000380615|KATNAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7962036132812	2	538.78645	1075.55835	-1.4035	-0.0007562	-1.0208	-0.00054999	-2.4243	-0.0013062	538.785839649632	75.612	0.8437	75.612	75.307	76.15	0					50	22	3	0	0	0	0.023473	1	9311	9311		65.465	0	1	1886600	+		7935	21326	5148	5163	9514	9514					0.023589461601659423
DMRCIERPQT	10	Unmodified	_DMRCIERPQT_					0	0	0			REV__ENST00000496017.1_1_7:6618325-6620478:+|nuORF	REV__ENST00000496017.1_1_7:6618325-6620478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.9034118652344	3	416.865635	1247.57508	-0.11776	-4.9091E-05	1.9545	0.00081475	1.8367	0.00076566	417.1999932972905	32.044	0.34208	31.887	31.737	32.079	-0.15772					11	7	2	0	0	0	0.03519	1	2159	2159		9.6461	0	1	86442	+		7936	33660	5149	5164	9515	9515					-0.038808762255257534
DMRFCGPNR	9	Unmodified	_DMRFCGPNR_					0	0	0		ENSG00000186306|ENST00000334438|OR10T2	ENSG00000186306|ENST00000334438|OR10T2	ENSG00000186306|ENST00000334438|OR10T2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3277587890625	2	548.24476	1094.47497	-0.29052	-0.00015928	-0.17809	-9.7639E-05	-0.46862	-0.00025692	548.2448049834051	40.554	0.27809	40.554	40.414	40.692	0					10	7	2	0	0	0	0.02435	1	3585	3585		42.396	0	1	98795			7937	9538	5150	5165	9516	9516					-0.0684906876867899
DMRHHPIV	8	Unmodified	_DMRHHPIV_					0	0	0			REV__ENST00000498711.1_1_17:57771154-57771226:+|nuORF	REV__ENST00000498711.1_1_17:57771154-57771226:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8009948730469	2	502.758361	1003.50217	-0.099242	-4.9895E-05	-0.54474	-0.00027387	-0.64398	-0.00032377	502.75771305392317	46.041	0.78477	46.092	45.724	46.509	0.051399					33	22	2	0	0	0	0.027866	1	4495	4495		33.516	12.569	1	638710	+		7938	33889	5151	5166	9517	9517					0.0005578283401064255
DMRLKITK	8	Unmodified	_DMRLKITK_					0	0	0			REV__nc|ENSG00000150045|Q9NZS2-4|KLRF1	REV__nc|ENSG00000150045|Q9NZS2-4|KLRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2742004394531	2	502.799694	1003.58484	-0.55784	-0.00028048	-1.8243	-0.00091724	-2.3821	-0.0011977	502.79778820052115	48.483	0.24038	48.483	48.311	48.551	0					10	6	2	0	0	0	0.027866	1	4951	4951		35.618	0	1	126950	+		7939	36777	5152	5167	9518	9518					0.08318679842136589
DMRLMRLI	8	Unmodified	_DMRLMRLI_					0	0	0			REV__ENSG00000184156|ENST00000388996|KCNQ3	REV__ENSG00000184156|ENST00000388996|KCNQ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7611083984375	2	524.293722	1046.57289	-0.30477	-0.00015979	1.539	0.00080687	1.2342	0.00064708	524.2941134347795	60.337	0.57591	60.161	59.704	60.28	-0.1761					18	14	2	0	0	0	0.027866	1	6697	6697		47.916	0	1	261050	+		7940	27639	5153	5168	9519	9519					0.05146739827318925
DMSAIIYEI	9	Unmodified	_DMSAIIYEI_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11594499-11598073:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7588500976562	2	527.759901	1053.50525	-0.77515	-0.00040909	1.365	0.00072041	0.58988	0.00031132	527.7597231870254	80.57	1.2178	80.591	80.232	81.449	0.021446					66	29	4	0	0	0	0.29104	1	9937	9937		76.847	2.8719	1	1235100			7941	6900	5154	5169	9520	9520					-0.019364316224937284
DMSALPLR	8	Unmodified	_DMSALPLR_					0	0	0			REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN	REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2701721191406	2	451.741845	901.469137	0.43951	0.00019855	-4.0276	-0.0018194	-3.5881	-0.0016209	451.7398379455577	46.791	0.59579	46.791	46.515	47.111	0					31	15	3	0	0	0	0.027866	1	4673	4673		37.159	11.709	1	716150	+		7942	20940	5155	5170	9521	9521					0.01446155991300202
DMSGPKWPK	9	Unmodified	_DMSGPKWPK_					0	0	0		ENST00000370982.3_1_1:68170780-68170900:-|nuORF	ENST00000370982.3_1_1:68170780-68170900:-|nuORF	ENST00000370982.3_1_1:68170780-68170900:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.291259765625	2	523.260402	1044.50625	-0.62674	-0.00032795	-0.4536	-0.00023735	-1.0803	-0.0005653	523.260226324158	56.927	0.68012	56.763	56.165	56.845	-0.16431					20	18	2	0	0	0	0.021513	1	6352	6352		71.877	6.0743	1	161420			7943	12979	5156	5171	9522	9522					-0.014221724629351229
DMSGPKWPK	9	Unmodified	_DMSGPKWPK_					0	0	0		ENST00000370982.3_1_1:68170780-68170900:-|nuORF	ENST00000370982.3_1_1:68170780-68170900:-|nuORF	ENST00000370982.3_1_1:68170780-68170900:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.260402	1044.50625	-0.42139	-0.0002205	-1.2282	-0.00064267	-1.6496	-0.00086317	523.2594293437166	56.611	0.46905	56.709	56.283	56.752	0.097893	-0.073418	-0.00019771	NaN	71.877	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141580			7944	12979	5156	5171							-0.014221724629351229
DMSGPKWPK	9	Unmodified	_DMSGPKWPK_					0	0	0		ENST00000370982.3_1_1:68170780-68170900:-|nuORF	ENST00000370982.3_1_1:68170780-68170900:-|nuORF	ENST00000370982.3_1_1:68170780-68170900:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.260402	1044.50625	0.36296	0.00018992	-0.81751	-0.00042777	-0.45455	-0.00023785	523.2595562487368	57.049	0.28965	56.847	56.672	56.962	-0.20208	0.06399	0.00023209	NaN	71.877	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268550			7945	12979	5156	5171							-0.014221724629351229
DMSGSALQKT	10	Unmodified	_DMSGSALQKT_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.79248046875	2	519.250231	1036.48591	-0.090298	-4.6887E-05	-2.2636	-0.0011754	-2.3539	-0.0012223	519.2488641799397	55.072	0.66882	55.072	54.831	55.5	0					42	18	3	0	0	0	0.03519	1	6129	6129		42.864	16.068	1	1255900	+		7946	25690	5157	5172	9523	9523					-0.030873879134105664
DMSGSALQKT	10	Unmodified	_DMSGSALQKT_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.250231	1036.48591	-0.284	-0.00014747	-2.0197	-0.0010487	-2.3037	-0.0011962	519.2490163065622	55.186	0.55424	55.035	54.782	55.336	-0.15036	0.032285	0.00021983	NaN	28.081	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1457700	+		7947	25690	5157	5172							-0.030873879134105664
DMSGSALQKT	10	Unmodified	_DMSGSALQKT_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.250231	1036.48591	-0.68184	-0.00035404	-1.8401	-0.0009555	-2.522	-0.0013095	519.2491380106284	54.834	0.67457	54.932	54.696	55.371	0.098015	-0.070638	0.0004063	NaN	28.081	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1490600	+		7948	25690	5157	5172							-0.030873879134105664
DMSGSALQKT	10	Unmodified	_DMSGSALQKT_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.250231	1036.48591	-0.82612	-0.00042896	-3.8881	-0.0020189	-4.7142	-0.0024479	519.2476686115418	55.14	0.54808	54.994	54.608	55.156	-0.14609	-0.0087498	-0.0017205	NaN	28.081	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299050	+		7949	25690	5157	5172							-0.030873879134105664
DMSGSALQKT	10	Unmodified	_DMSGSALQKT_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.250231	1036.48591	0.080189	4.1638E-05	-3.9529	-0.0020525	-3.8727	-0.0020109	519.2478361867799	55.212	0.5894	54.981	54.601	55.19	-0.23087	-0.02153	-0.0017877	NaN	28.081	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186030	+		7950	25690	5157	5172							-0.030873879134105664
DMSICTLLL	9	Unmodified	_DMSICTLLL_					0	0	0			REV__ENSG00000112486|ENST00000341935|CCR6	REV__ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7811279296875	2	504.758846	1007.50314	-0.0029828	-1.5056E-06	3.2429	0.0016369	3.2399	0.0016354	504.76097719720883	83.656	1.109	83.517	82.867	83.976	-0.1386					64	25	4	0	0	0	0.024541	1	10028	10028		24.203	15.971	1	269570	+		7951	22006	5158	5173	9524	9524					-0.0003118363193834739
DMSIFIGPTE	10	Unmodified	_DMSIFIGPTE_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.3150024414062	2	555.262807	1108.51106	-0.11883	-6.598E-05	-3.2861	-0.0018247	-3.405	-0.0018907	555.761963011903	67.889	0.36427	67.651	67.422	67.787	-0.23814					11	8	2	0	0	0	0.03519	1	7806	7806		20.947	0	1	77318	+		7952	22840	5159	5174	9525	9525					-0.03885333110838474
DMSLSHKW	8	Unmodified	_DMSLSHKW_					0	0	0			REV__ENST00000302548.4_1_X:41586296-41586413:+|nuORF	REV__ENST00000302548.4_1_X:41586296-41586413:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78277587890625	2	502.236927	1002.4593	-0.53802	-0.00027021	3.5922	0.0018041	3.0541	0.0015339	502.2386004480377	44.941	0.99315	44.941	44.485	45.478	0					57	28	3	0	0	0	0.027866	1	4371	4371		35.618	0	1	1874600	+		7953	30081	5160	5175	9526	9526					-0.04183032014077526
DMTEQAKDR	9	Unmodified	_DMTEQAKDR_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7296142578125	2	547.250763	1092.48697	-0.50205	-0.00027475	0.96907	0.00053033	0.46702	0.00025558	547.2511430939585	62.136	0.86614	61.879	61.423	62.29	-0.25725					71	21	4	0	0	0	0.024374	1	6909	6909		40.778	9.2484	1	4549500	+		7954	25807	5161	5176	9527	9527					-0.055571735445028025
DMTKQITK	8	Unmodified	_DMTKQITK_					0	0	0			REV__DGKA|p.S351I|1|0.07|ENSG00000065357|chr12:55940931-55940931|G/T|missense_variant	REV__DGKA|p.S351I|1|0.07|ENSG00000065357|chr12:55940931-55940931|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7481994628906	2	482.760235	963.505917	0.19361	9.3469E-05	4.3115	0.0020814	4.5051	0.0021749	482.7621590151995	68.503	1.5849	68.21	67.466	69.051	-0.29267					55	40	2	0	0	0	0.027866	1	8229	8229		17.365	0	1	193930	+		7955	19668	5162	5177	9528	9528					0.02270407817195519
DMVCSYESSET	11	Unmodified	_DMVCSYESSET_					0	0	0			REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	624.7670288085938	2	625.731211	1249.44787	0.18651	0.0001167	-2.4438	-0.0015292	-2.2573	-0.0014125	625.7295964782677	75.293	0.36922	75.118	74.943	75.312	-0.17548					14	8	2	0	0	0	0.024778	1	8909	8909		36.447	4.9169	1	106780	+		7956	36723	5163	5178	9529	9529					-0.16687686681052583
DMVGILDFY	9	Unmodified	_DMVGILDFY_					0	0	0		ENSG00000115419|ENST00000320717|GLS;ENST00000495444.1_1_2:191785873-191789325:+|nuORF;ENST00000461965.5_1_2:191775005-191792247:+|nuORF;nc|ENSG00000115419|O94925-3|GLS	ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7732543945312	2	536.754618	1071.49468	-0.7677	-0.00041207	-2.9088	-0.0015613	-3.6765	-0.0019734	537.255411321626	41.743	0.33346	41.611	41.491	41.825	-0.13219					11	8	2	0	0	0	0.024412	1	3776	3776		24.203	4.206	1	75850			7957	3444	5164	5179	9530	9530					-0.03820414276947304
DMVKESLLI	9	Unmodified	_DMVKESLLI_					0	0	0			REV__ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	REV__ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2939453125	2	524.291368	1046.56818	0.92181	0.0004833	3.8958	0.0020425	4.8176	0.0025258	524.2932286638162	51.733	0.37988	51.549	51.218	51.598	-0.18404					16	9	2	0	0	0	0.023817	1	5333	5333		71.296	4.8664	1	629640	+		7958	19067	5165	5180	9531	9531					0.04676134165561052
DMVKISMDV	9	Unmodified	_DMVKISMDV_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;nc|ENSG00000127663|O94953-2|KDM4B	ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7930297851562	2	519.253928	1036.4933	0.17867	9.2773E-05	0.78757	0.00040895	0.96624	0.00050172	519.7548612076102	64.271	0.1787	64.271	64.168	64.347	0					6	4	2	0	0	0	0.024292	1	7549	7549		49.442	13.823	1	86962			7959	4258;1332	5166	5181	9532	9532					-0.023483716373220886
DMVKTIKW	8	Unmodified	_DMVKTIKW_					0	0	0			REV__nc|ENSG00000104853|O96005-3|CLPTM1	REV__nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2553405761719	2	510.78097	1019.54739	-0.55553	-0.00028375	-2.4161	-0.0012341	-2.9716	-0.0015178	510.77875729799126	91.433	0.72662	91.309	91.076	91.802	-0.12341					32	16	4	0	0	0	0.027866	1	11267	11267		37.159	10.466	1	123150	+		7960	21470	5167	5182	9533	9533					0.0383958857653397
DMVLVEDEEV	10	Unmodified	_DMVLVEDEEV_					0	0	0		ENSG00000214415|ENST00000398291|GNAT3	ENSG00000214415|ENST00000398291|GNAT3	ENSG00000214415|ENST00000398291|GNAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.7493286132812	2	589.268287	1176.52202	-1.135	-0.00066883	4.366	0.0025728	3.231	0.0019039	589.7769132768074	60.537	0.40755	60.283	60.014	60.421	-0.25373					17	9	3	0	0	0	0.03519	1	6708	6708		40.778	14.085	1	49264			7961	10555	5168	5183	9534	9534					-0.05917975527222552
DMVQRSTL	8	Unmodified	_DMVQRSTL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.2702331542969	2	475.242209	948.469866	-0.49225	-0.00023394	-2.3511	-0.0011173	-2.8434	-0.0013513	475.24087046426496	25.219	0.91106	25.185	24.771	25.682	-0.034395					35	21	3	0	0	0	0.027866	1	1137	1137		29.15	1.2673	1	234260			7962	6240	5169	5184	9535	9535					-0.006430493596440101
DMVQSALCFVP	11	Unmodified	_DMVQSALCFVP_					0	0	0			REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	605.7716674804688	2	605.28576	1208.55697	-0.71646	-0.00043366	1.3921	0.00084261	0.67562	0.00040894	605.2862798993374	58.306	1.013	58.128	57.895	58.908	-0.17775					40	24	2	0	0	0	0.024771	1	6378	6378		51.193	17.02	1	291080	+		7963	36854	5170	5185	9536	9536					-0.038970112002516544
DMVQSALCFVP	11	Unmodified	_DMVQSALCFVP_					0	0	0			REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	605.28576	1208.55697	-1.1796	-0.000714	1.8897	0.0011438	0.71011	0.00042982	605.286482897794	58.144	0.39352	57.969	57.859	58.252	-0.1749	-0.034202	0.0010955	NaN	51.193	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330090	+		7964	36854	5170	5185							-0.038970112002516544
DMVQSALCFVP	11	Unmodified	_DMVQSALCFVP_					0	0	0			REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	605.28576	1208.55697	-1.5941	-0.00096491	2.3859	0.0014441	0.79174	0.00047923	605.2873116817269	57.808	0.68864	57.902	57.762	58.451	0.094223	-0.10144	0.0016962	NaN	51.193	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240220	+		7965	36854	5170	5185							-0.038970112002516544
DMVRGEVNP	9	Unmodified	_DMVRGEVNP_					0	0	0			REV__nc|ENSG00000161513|P22570-4|FDXR	REV__nc|ENSG00000161513|P22570-4|FDXR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8306579589844	2	508.745116	1015.47568	-0.028775	-1.4639E-05	1.2168	0.00061904	1.188	0.0006044	509.2487764962545	47.229	0.68858	46.959	46.662	47.35	-0.26939					22	18	2	0	0	0	0.0242	1	4547	4547		51.193	7.0759	1	146160	+		7966	25385	5171	5186	9537	9537					-0.031439508479707
DMVRLREP	8	Unmodified	_DMVRLREP_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814-6|SMTN	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2919921875	2	508.271301	1014.52805	-0.63079	-0.00032061	0.83148	0.00042262	0.2007	0.00010201	508.2715210393789	64.489	0.46597	64.233	63.999	64.465	-0.25563					17	11	2	0	0	0	0.027866	1	7344	7344		37.159	0	1	160250			7967	9296	5172	5187	9538	9538					0.02136632285646556
DMVSRLRHAI	10	Unmodified	_DMVSRLRHAI_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.33203125	2	599.329682	1196.64481	0.40557	0.00024307	3.2835	0.0019679	3.6891	0.002211	599.3315428662127	58.502	0.6207	58.26	58.001	58.622	-0.24165					38	14	3	0	0	0	0.77808	1	6416	6416		62.107	3.3255	1	2066500	+		7968	20906	5173	5188	9539	9539					0.054353705053927115
DMVWWPVG	8	Unmodified	_DMVWWPVG_					0	0	0		nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-2|SLC5A11	nc|ENSG00000158865|Q8WWX8-2|SLC5A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7825012207031	2	495.231113	988.447674	-0.14996	-7.4266E-05	-4.3719	-0.0021651	-4.5219	-0.0022394	495.2287856879622	46.515	0.65329	46.567	46.408	47.061	0.051395					28	17	2	0	0	0	0.027866	1	4555	4555		21.702	1.2205	1	61931			7969	6710	5174	5189	9540	9540					-0.04701229037402754
DMWHLTDG	8	Unmodified	_DMWHLTDG_					0	0	0			REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.79302978515625	2	487.70546	973.396366	0.27646	0.00013483	3.4718	0.0016932	3.7482	0.001828	487.7070465429021	36.361	0.38724	36.144	35.981	36.368	-0.21661					17	9	2	0	0	0	0.027866	1	2825	2825		24.203	0	1	262790	+		7970	32603	5175	5190	9541	9541					-0.0913959780211826
DMYMILQT	8	Unmodified	_DMYMILQT_					0	0	0			REV__ENSG00000213822|ENST00000396477|CEACAM18	REV__ENSG00000213822|ENST00000396477|CEACAM18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.310546875	2	507.735371	1013.45619	-0.013039	-6.6204E-06	-0.082114	-4.1692E-05	-0.095153	-4.8312E-05	507.73532804633965	31.785	0.56241	31.548	31.262	31.824	-0.23667					23	13	2	0	0	0	0.027866	1	2158	2158		76.847	21.342	1	459470	+		7971	28751	5176	5191	9542	9542					-0.050000431830994785
DMYMILQT	8	Unmodified	_DMYMILQT_					0	0	0			REV__ENSG00000213822|ENST00000396477|CEACAM18	REV__ENSG00000213822|ENST00000396477|CEACAM18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.31024169921875	2	507.735371	1013.45619	-0.20803	-0.00010562	0.33543	0.00017031	0.1274	6.4683E-05	507.7354711948407	31.729	0.6554	31.544	31.208	31.864	-0.18503					32	15	3	0	0	0	0.027866	1	2146	2146		53.351	14.545	1	447040	+		7972	28751	5176	5191	9543	9543					-0.050000431830994785
DMYVHVAPY	9	Unmodified	_DMYVHVAPY_					0	0	0			REV__nc|ENSG00000204290|Q9UIR0-2|BTNL2	REV__nc|ENSG00000204290|Q9UIR0-2|BTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.7847290039062	2	547.75241	1093.49027	0.37876	0.00020747	0.78688	0.00043102	1.1656	0.00063848	547.7523409420426	83.49	1.5349	83.321	82.69	84.225	-0.16915					62	35	2	0	0	0	0.024183	1	10135	10135		50.025	0	1	91507	+		7973	28585	5177	5192	9544	9544					-0.05273878699836132
DMYVHVAPY	9	Unmodified	_DMYVHVAPY_					0	0	0			REV__nc|ENSG00000204290|Q9UIR0-2|BTNL2	REV__nc|ENSG00000204290|Q9UIR0-2|BTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.7838745117188	2	547.75241	1093.49027	-0.23999	-0.00013146	0.93012	0.00050947	0.69012	0.00037802	547.7524837758317	83.307	1.6699	83.168	82.61	84.28	-0.1386					53	38	2	0	0	0	0.024262	1	10119	10119		57.811	5.5121	1	130660	+		7974	28585	5177	5192	9545	9545					-0.05273878699836132
DNAEHYPNL	9	Unmodified	_DNAEHYPNL_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2784423828125	2	536.738345	1071.46214	-0.77613	-0.00041658	2.6021	0.0013967	1.826	0.00098008	536.7393845285833	29.893	0.50301	29.648	29.317	29.82	-0.24415					18	11	2	0	0	0	0.024288	1	1855	1855		52.937	1.4089	1	65571	+		7975	27373	5178	5193	9546	9546					-0.07073485355567755
DNAEHYPNL	9	Unmodified	_DNAEHYPNL_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.738345	1071.46214	-0.80807	-0.00043372	6.4564	0.0034654	5.6483	0.0030317	536.7429771226505	29.594	0.88316	29.445	28.784	29.668	-0.14952	-0.10984	0.0045268	NaN	52.937	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103430	+		7976	27373	5178	5193							-0.07073485355567755
DNAGKVAR	8	Unmodified	_DNAGKVAR_					0	0	0		nc|ENSG00000198520|Q6PIY5-2|ARMH1;ENST00000357508.5_1_1:45155363-45190065:+|nuORF;ENSG00000198520|ENST00000535358|ARMH1;ENST00000444751.5_1_1:45140474-45166606:+|nuORF;ENST00000424484.5_1_1:45155363-45158665:+|nuORF	nc|ENSG00000198520|Q6PIY5-2|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.7283935546875	2	415.727584	829.440614	4.4908	0.0018669	-2.3453	-0.00097499	2.1455	0.00089195	415.7264988862128	17.696	0.59088	17.446	17.276	17.867	-0.25049					18	11	3	0	0	0	1.0574	1	198	198		24.203	2.5004	1	162110			7977	10142	5179	5194	9547	9547					0.019071744063694496
DNAKILYDA	9	Unmodified	_DNAKILYDA_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;nc|ENSG00000187775|Q9UFH2-4|DNAH17;ENST00000589793.1_1_17:76539878-76567391:-|nuORF;DNAH17-TMC6|1|fusion	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7894287109375	2	511.761289	1021.50803	-0.84431	-0.00043208	3.7615	0.001925	2.9172	0.0014929	512.2619326542344	82.976	0.42822	83.003	82.702	83.13	0.02655					18	9	2	0	0	0	0.024367	1	10256	10256		36.447	10.997	1	106540			7978	9658	5180	5195	9548	9548					-0.001868401733418068
DNAKVRRSRRL	11	Unmodified	_DNAKVRRSRRL_					0	0	0			REV__ENSG00000181965|ENST00000314744|NEUROG1	REV__ENSG00000181965|ENST00000314744|NEUROG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.6081848144531	3	457.607764	1369.80146	0.98273	0.00044971	-0.51799	-0.00023704	0.46474	0.00021267	457.6076861640624	98.645	1.9478	98.521	97.849	99.796	-0.12413					135	49	3	0	0	0	1.0764	1	12266	12266		17.833	0	1	291450	+		7979	27440	5181	5196	9549	9549					0.13135371720068179
DNAPVFAQEV	10	Unmodified	_DNAPVFAQEV_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2822265625	2	545.264196	1088.51384	-0.13804	-7.5269E-05	-0.12415	-6.7696E-05	-0.26219	-0.00014296	545.2643626919206	50.415	0.86141	50.31	49.783	50.644	-0.10558					43	22	3	0	0	0	0.03519	1	5170	5170		40.058	27.246	1	1857500			7980	7399	5182	5197	9550	9550					-0.026877416616798655
DNAPVFAQEV	10	Unmodified	_DNAPVFAQEV_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2822265625	2	545.264196	1088.51384	0.13287	7.2451E-05	0.17239	9.4E-05	0.30527	0.00016645	545.7675814471494	50.818	0.22308	50.706	50.563	50.786	-0.11163					6	5	2	0	0	0	0.03519	1	5170	5170		40.058	27.246	1	734240			7981	7399	5182	5197	9551	9551					-0.026877416616798655
DNCEEEEDCDL	11	Unmodified	_DNCEEEEDCDL_					0	0	0			REV__ENSG00000176635|ENST00000336726|HORMAD2	REV__ENSG00000176635|ENST00000336726|HORMAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.2423400878906	3	438.476319	1312.40713	-0.39147	-0.00017165	0.7963	0.00034916	0.40482	0.00017751	438.47644467517193	44.759	0.3527	44.548	44.362	44.715	-0.21109					11	8	2	0	0	0	0.02484	1	4189	4189		5.1424	0	1	57854	+		7982	27036	5183	5198	9552	9552					-0.23658072791295126
DNDILEYFI	9	Unmodified	_DNDILEYFI_					0	0	0			REV__ENSG00000149646|ENST00000373973|CNBD2	REV__ENSG00000149646|ENST00000373973|CNBD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.340087890625	2	571.274229	1140.53391	-0.30694	-0.00017535	-1.5897	-0.00090815	-1.8966	-0.0010835	571.2731095736682	71.949	1.1126	71.949	71.301	72.414	0					37	28	2	0	0	0	0.024397	1	8709	8709		31.53	9.8441	1	192160	+		7983	24693	5184	5199	9553	9553					-0.030739907217139262
DNDLREMHTI	10	Unmodified	_DNDLREMHTI_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2120666503906	3	415.196038	1242.56629	-0.44571	-0.00018506	2.206	0.00091593	1.7603	0.00073088	415.1967233174293	27.849	0.36464	27.93	27.759	28.124	0.081293					11	8	2	0	0	0	0.03519	1	1530	1530		18.531	0	1	28411			7984	8446	5185	5200	9554	9554					-0.04529526590363275
DNDPSDPALA	10	Unmodified	_DNDPSDPALA_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.307861328125	2	507.722361	1013.43017	-1.0088	-0.00051221	0.463	0.00023507	-0.54583	-0.00027713	507.722539306604	43.78	0.66299	43.536	43.205	43.868	-0.24393					43	16	4	0	0	0	0.03519	1	3975	3975		41.427	0	1	1540400	+		7985	25109	5186	5201	9555	9555					-0.07600897829377118
DNDYGDNS	8	Unmodified	_DNDYGDNS_					0	0	0		LRP2|p.C2848Y|1|0.26|ENSG00000081479|chr2:169198821-169198821|C/T|missense_variant	LRP2|p.C2848Y|1|0.26|ENSG00000081479|chr2:169198821-169198821|C/T|missense_variant	LRP2|p.C2848Y|1|0.26|ENSG00000081479|chr2:169198821-169198821|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.281005859375	2	450.154311	898.294069	0.32762	0.00014748	-4.237	-0.0019073	-3.9093	-0.0017598	450.15068029777683	50.962	0.22195	50.962	50.845	51.067	0					12	5	3	0	0	0	0.027866	1	5383	5383		6.7355	0	1	84293			7986	17925	5187	5202	9556	9556					-0.15914592340027411
DNEARLVE	8	Unmodified	_DNEARLVE_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77447509765625	2	473.235439	944.456324	0.58492	0.0002768	4.3419	0.0020547	4.9268	0.0023315	473.2375087928271	36.91	0.42646	36.847	36.588	37.014	-0.063385					15	10	2	0	0	0	0.027866	1	2945	2945		27.882	0	1	234850	+		7987	22806	5188	5203	9557	9557					-0.01812583867229023
DNEAVFIADK	10	Unmodified	_DNEAVFIADK_					0	0	0		RBAK|p.H223D|1|0.2|ENSG00000146587|chr7:5064123-5064123|C/G|missense_variant	RBAK|p.H223D|1|0.2|ENSG00000146587|chr7:5064123-5064123|C/G|missense_variant	RBAK|p.H223D|1|0.2|ENSG00000146587|chr7:5064123-5064123|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.7366333007812	2	561.277303	1120.54005	0.22339	0.00012538	3.7657	0.0021136	3.9891	0.002239	561.2800806065745	87.758	1.9494	87.723	87.236	89.185	-0.035362					69	46	2	0	0	0	0.03519	1	11119	11119		54.722	19.57	1	143860			7988	19031	5189	5204	9558	9558					-0.015394724901852896
DNEAVFIADK	10	Unmodified	_DNEAVFIADK_					0	0	0		RBAK|p.H223D|1|0.2|ENSG00000146587|chr7:5064123-5064123|C/G|missense_variant	RBAK|p.H223D|1|0.2|ENSG00000146587|chr7:5064123-5064123|C/G|missense_variant	RBAK|p.H223D|1|0.2|ENSG00000146587|chr7:5064123-5064123|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.277303	1120.54005	0.13113	7.36E-05	4.5081	0.0025303	4.6392	0.0026039	561.2802976678595	87.605	1.9069	87.605	87.406	89.313	0	-0.072447	0.0010659	NaN	54.722	61	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159970			7989	19031	5189	5204							-0.015394724901852896
DNEDSLFVK	9	Unmodified	_DNEDSLFVK_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3194580078125	2	533.756204	1065.49785	-0.79623	-0.000425	-1.7483	-0.00093319	-2.5446	-0.0013582	533.7549431043577	34.108	0.7408	34.108	33.739	34.479	0					42	18	3	0	0	0	0.024319	1	2485	2485		31.53	0	1	964000	+		7990	26001	5190	5205	9559	9559					-0.03227447898552782
DNETYEVE	8	Unmodified	_DNETYEVE_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7900390625	2	499.701094	997.387635	-0.61132	-0.00030548	1.5934	0.00079624	0.98211	0.00049076	499.70179655605864	29.436	0.71288	29.439	29.204	29.916	0.0031357					28	17	2	0	0	0	0.027866	1	1817	1817		22.58	0	1	219420	+		7991	23872	5191	5206	9560	9560					-0.11116292957603946
DNEWVVLL	8	Unmodified	_DNEWVVLL_					0	0	0		LATS1|p.R767L|1|0.26|ENSG00000131023|chr6:149680168-149680168|C/A|missense_variant	LATS1|p.R767L|1|0.26|ENSG00000131023|chr6:149680168-149680168|C/A|missense_variant	LATS1|p.R767L|1|0.26|ENSG00000131023|chr6:149680168-149680168|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7816162109375	2	494.260925	986.507297	0.67349	0.00033288	0.68215	0.00033716	1.3556	0.00067004	494.26044832971365	66.188	0.27318	66.188	65.95	66.224	0					9	6	2	0	0	0	0.027866	1	7843	7843		47.657	0	1	591170			7992	17911	5192	5207	9561	9561					0.013503651776318293
DNFDPGAGGQY	11	Unmodified	_DNFDPGAGGQY_					0	0	0			REV__nc|ENSG00000172794|Q96AX2-2|RAB37	REV__nc|ENSG00000172794|Q96AX2-2|RAB37	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.7322387695312	2	570.73326	1139.45197	0.24385	0.00013917	-3.5083	-0.0020023	-3.2645	-0.0018631	570.731097082448	72.552	2.7024	72.287	70.864	73.566	-0.26479					140	65	3	0	0	0	0.97926	1	8505	8505		41.427	0.85399	1	645900	+		7993	36944	5193	5208	9562	9562					-0.11218093080810831
DNFGKFEIV	9	Unmodified	_DNFGKFEIV_					0	0	0		ENST00000494283.1_1_14:50520012-50520198:+|nuORF	ENST00000494283.1_1_14:50520012-50520198:+|nuORF	ENST00000494283.1_1_14:50520012-50520198:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.8057861328125	2	534.771657	1067.52876	-1.4775	-0.0007901	1.9216	0.0010276	0.44413	0.00023751	534.7724300968727	80.12	0.79651	79.968	79.588	80.385	-0.15169					30	16	3	0	0	0	0.024367	1	9972	9972		52.937	20.124	1	681900			7994	15526	5194	5209	9563	9563					-0.0023024979368528875
DNFPQALLT	9	Unmodified	_DNFPQALLT_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.23480224609375	2	509.763832	1017.51311	-0.0093682	-4.7756E-06	-2.6997	-0.0013762	-2.7091	-0.001381	509.7625353640401	104.82	0.4221	104.82	104.64	105.06	0					18	14	2	0	0	0	0.024447	1	13466	13466		19.104	3.4617	1	61997			7995	18408	5195	5210	9564	9564					0.0050546368928507945
DNFPQALLT	9	Unmodified	_DNFPQALLT_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.763832	1017.51311	0.3584	0.0001827	-4.073	-0.0020762	-3.7146	-0.0018935	510.2633599311569	105.37	0.15822	105.2	105.07	105.22	-0.16484	0.25807	-0.00097252	NaN	19.104	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85294			7996	18408	5195	5210							0.0050546368928507945
DNFVMEHSDI	10	Unmodified	_DNFVMEHSDI_					0	0	0		ENST00000495736.1_1_7:129986419-130007427:+|nuORF;nc|ENSG00000158525|Q8WXQ8-2|CPA5;nc|ENSG00000158525|Q8WXQ8-3|CPA5;ENSG00000158525|ENST00000474905|CPA5	ENST00000495736.1_1_7:129986419-130007427:+|nuORF	ENST00000495736.1_1_7:129986419-130007427:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5364685058594	3	402.841372	1205.50229	1.1609	0.00046764	2.9086	0.0011717	4.0694	0.0016393	402.84339165370983	32.83	0.20203	32.638	32.536	32.738	-0.19261					7	4	2	0	0	0	0.03519	1	2284	2284		32.751	3.1998	1	20105			7997	6679	5196	5211	9565	9565					-0.09224306747296396
DNGAKFLRI	9	Unmodified	_DNGAKFLRI_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7688598632812	2	517.293091	1032.57163	-1.2412	-0.00064207	2.388	0.0012353	1.1468	0.00059325	517.2941330479238	60.638	0.40174	60.638	60.366	60.768	0					14	10	2	0	0	0	0.024523	1	6953	6953		15.642	0	1	141140			7998	10296	5197	5212	9566	9566					0.05664565054416926
DNGFSQIN	8	Unmodified	_DNGFSQIN_					0	0	0			REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.2398376464844	2	447.701232	893.38791	-0.39129	-0.00017518	-4.2903	-0.0019208	-4.6816	-0.0020959	447.6989573730054	54.409	0.2118	54.273	54.151	54.363	-0.13617					7	5	2	0	0	0	0.027866	1	5776	5776		37.159	0	1	40180	+		7999	19712	5198	5213	9567	9567					-0.063048284470824
DNHEISVYQC	10	Unmodified	_DNHEISVYQC_					0	0	0		ENSG00000105679|ENST00000222286|GAPDHS	ENSG00000105679|ENST00000222286|GAPDHS	ENSG00000105679|ENST00000222286|GAPDHS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.15509033203125	3	403.173122	1206.49754	0.92121	0.00037141	2.3709	0.0009559	3.2922	0.0013273	403.5086628486681	33.08	0.16544	32.88	32.771	32.937	-0.20019					5	3	2	0	0	0	0.03519	1	2315	2315		17.833	0	1	24972			8000	2708	5199	5214	9568	9568					-0.09745190890043887
DNHPTKFKV	9	Unmodified	_DNHPTKFKV_					0	0	0		ENSG00000137218|ENST00000373018|FRS3	ENSG00000137218|ENST00000373018|FRS3	ENSG00000137218|ENST00000373018|FRS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.3074951171875	2	543.290548	1084.56654	-0.54212	-0.00029453	3.5252	0.0019152	2.9831	0.0016207	543.293123037703	79.658	0.50281	79.508	79.321	79.823	-0.15051					18	11	2	0	0	0	0.024418	1	9541	9541		37.812	0	1	256550			8001	5102	5200	5215	9569	9569					0.027642611918054172
DNIECRPEAP	10	Unmodified	_DNIECRPEAP_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.340087890625	2	572.258588	1142.50262	-0.35855	-0.00020518	-2.9414	-0.0016832	-3.2999	-0.0018884	572.2565989313939	71.809	0.8877	71.809	71.566	72.454	0					38	22	3	0	0	0	0.03519	1	8709	8709		32.812	0	1	536990	+		8002	24724	5201	5216	9570	9570					-0.06292887027439065
DNIEVAFSY	9	Unmodified	_DNIEVAFSY_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.761962890625	2	529.245472	1056.47639	-1.0006	-0.00052958	-3.7495	-0.0019844	-4.7501	-0.002514	529.2424482388644	45.056	0.53004	44.957	44.554	45.084	-0.099445					23	13	3	0	0	0	0.024389	1	4255	4255		42.864	3.6114	1	131800			8003	5453	5202	5217	9571	9571					-0.049588329272637566
DNIIAIPL	8	Unmodified	_DNIIAIPL_					0	0	0			REV__ENSG00000164794|ENST00000524391|KCNV1	REV__ENSG00000164794|ENST00000524391|KCNV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7482604980469	2	434.760561	867.506569	-0.060665	-2.6375E-05	2.3104	0.0010045	2.2498	0.00097812	434.76125253540596	65.739	0.30916	65.466	65.297	65.606	-0.27282					15	8	2	0	0	0	0.027866	1	7757	7757		60.972	0	1	282540	+		8004	25802	5203	5218	9572	9572					0.06751570528570028
DNIIANSEEI	10	Unmodified	_DNIIANSEEI_					0	0	0			REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.27001953125	2	559.272218	1116.52988	0.16407	9.1757E-05	-2.8674	-0.0016036	-2.7033	-0.0015119	559.2704498208099	62.674	2.0612	62.737	62.442	64.504	0.062767					93	54	3	0	0	0	0.52143	1	7215	7215		85.862	0.70101	1	2967600	+		8005	27301	5204	5219	9573	9573					-0.023720802154230114
DNIKGITI	8	Unmodified	_DNIKGITI_					0	0	0			REV__nc|ENSG00000138592|P40818-2|USP8	REV__nc|ENSG00000138592|P40818-2|USP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.5226745605469	2	437.255643	872.496732	-0.38009	-0.0001662	0.46421	0.00020298	0.084117	3.6781E-05	437.25567549198144	47.922	0.66065	47.646	47.344	48.004	-0.27598					38	17	3	0	0	0	0.027866	1	4746	4746		21.96	0	1	1794400	+		8006	23863	5205	5220	9574	9574					0.05538382523195651
DNIKRNHN	8	Unmodified	_DNIKRNHN_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.76068115234375	2	505.759946	1009.50534	-0.0038285	-1.9363E-06	0.81063	0.00040998	0.8068	0.00040805	505.7605623678543	107.24	0.67344	107.11	106.68	107.35	-0.1238					51	22	3	0	0	0	1.0009	1	13332	13332		37.159	0.71236	1	321480			8007	3299	5206	5221	9575	9575					0.000967492123777447
DNKALETHA	9	Unmodified	_DNKALETHA_					0	0	0			REV__AKAP1|p.D282N|1|0.31|ENSG00000121057|chr17:57106308-57106308|G/A|missense_variant	REV__AKAP1|p.D282N|1|0.31|ENSG00000121057|chr17:57106308-57106308|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3134460449219	2	499.748713	997.482873	-0.18345	-9.1678E-05	-1.4556	-0.00072744	-1.6391	-0.00081911	500.2499298204954	76.287	1.4175	76.019	75.389	76.807	-0.26806					59	34	2	0	0	0	0.024374	1	9043	9043		40.778	11.629	1	128510	+		8008	19095	5207	5222	9576	9576					-0.015968949759098905
DNKDLRIEA	9	Unmodified	_DNKDLRIEA_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3117065429688	2	537.28292	1072.55129	0.4365	0.00023452	3.1131	0.0016726	3.5496	0.0019071	537.2844678376858	59.204	0.73338	59.204	58.787	59.52	0					45	19	3	0	0	0	0.023635	1	6753	6753		56.721	1.9447	1	4570100	+		8009	22076	5208	5223	9577	9577					0.01791349603922754
DNKDLRIEA	9	Unmodified	_DNKDLRIEA_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3118896484375	2	537.28292	1072.55129	0.86976	0.00046731	2.7386	0.0014714	3.6083	0.0019387	537.2842643162314	59.396	0.76156	59.196	58.816	59.577	-0.20016					39	18	3	0	0	0	0.023635	1	6751	6751		56.721	0	1	4613100	+		8010	22076	5208	5223	9578	9578					0.01791349603922754
DNKDLRIEA	9	Unmodified	_DNKDLRIEA_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.28292	1072.55129	0.21047	0.00011308	3.1546	0.0016949	3.365	0.001808	537.2848987701244	59.454	0.61053	59.257	58.888	59.499	-0.19742	0.060568	-0.00025505	NaN	56.721	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367920	+		8011	22076	5208	5223							0.01791349603922754
DNKDLRIEA	9	Unmodified	_DNKDLRIEA_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.28292	1072.55129	0.13002	6.9859E-05	3.7004	0.0019882	3.8304	0.002058	537.2848783170738	59.314	0.48412	59.132	58.911	59.395	-0.18134	-0.063818	0.0003315	NaN	56.721	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389440	+		8012	22076	5208	5223							0.01791349603922754
DNKDLRIEA	9	Unmodified	_DNKDLRIEA_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.28292	1072.55129	-0.31707	-0.00017036	3.5617	0.0019137	3.2446	0.0017433	537.2850447468688	59.486	0.76386	59.238	58.808	59.571	-0.24842	0.04202	0.00018247	NaN	56.721	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346140	+		8013	22076	5208	5223							0.01791349603922754
DNKKLRIVD	9	Unmodified	_DNKKLRIVD_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.8176879882812	2	550.824755	1099.63496	-0.11709	-6.4498E-05	3.9276	0.0021634	3.8105	0.0020989	550.8267132436732	39.393	0.44657	39.393	39.148	39.594	0					20	12	2	0	0	0	0.024495	1	3370	3370		19.997	0	1	252910	+		8014	20687	5209	5224	9579	9579					0.0891250577167284
DNKNDNPS	8	Unmodified	_DNKNDNPS_					0	0	0			REV__WRN|p.E431K|1|0.15|ENSG00000165392|chr8:31083720-31083720|G/A|missense_variant	REV__WRN|p.E431K|1|0.15|ENSG00000165392|chr8:31083720-31083720|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2423095703125	2	452.193771	902.372988	-0.087899	-3.9747E-05	-2.2747	-0.0010286	-2.3626	-0.0010684	452.19289583976297	54.123	0.11607	53.877	53.833	53.949	-0.2453					5	3	2	0	0	0	0.027866	1	5728	5728		12.207	3.3845	1	201740	+		8015	37786	5210	5225	9580	9580					-0.08210320315095032
DNKQSAVLGV	10	Unmodified	_DNKQSAVLGV_					0	0	0			REV__nc|ENSG00000177628|P04062-4|GBA1	REV__nc|ENSG00000177628|P04062-4|GBA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.7644653320312	2	515.780013	1029.54547	-0.98971	-0.00051047	1.8855	0.00097248	0.89576	0.00046201	515.7802405322567	25.325	0.27128	25.325	25.173	25.445	0					10	6	2	0	0	0	0.03519	1	1172	1172		23.523	1.8369	1	69541	+		8016	27131	5211	5226	9581	9581					0.03188251092274186
DNKRPTLGRLI	11	Unmodified	_DNKRPTLGRLI_					0	0	0			REV__nc|ENSG00000163714|O15042-3|U2SURP	REV__nc|ENSG00000163714|O15042-3|U2SURP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8828125	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	0.99129	1	11960	11960		38.754	0.94209	1	3558500	+		8017	25623	5212	5227	9582	9582					0.12211243991418996
DNKTMDDLL	9	Unmodified	_DNKTMDDLL_					0	0	0			REV__ENSG00000159840|ENST00000322764|ZYX	REV__ENSG00000159840|ENST00000322764|ZYX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7842407226562	2	532.750064	1063.48558	-1.0604	-0.00056491	3.8846	0.0020695	2.8243	0.0015046	532.7522236650422	45.84	0.37746	45.689	45.379	45.756	-0.15157					14	10	2	0	0	0	0.024511	1	4429	4429		19.104	3.4617	1	1542000	+		8018	25276	5213	5228	9583	9583					-0.0436280763326522
DNLALMSL	8	Oxidation (M)	_DNLALM(Oxidation (M))SL_		DNLALM(1)SL		DNLALM(53)SL	0	0	1			REV__ENSG00000167359|ENST00000380211|OR51I1	REV__ENSG00000167359|ENST00000380211|OR51I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.7386169433594	2	446.725861	891.437169	-0.41137	-0.00018377	3.2686	0.0014602	2.8572	0.0012764	446.7271936407421	65.203	0.77678	65.203	64.944	65.721	0					47	21	3	0	0	0	0.027866	1	7718	7718		52.937	8.8199	1	1360400	+		8019	26133	5214	5229	9584	9584		777			-0.012892564825051522
DNLALMSL	8	Oxidation (M)	_DNLALM(Oxidation (M))SL_		DNLALM(1)SL		DNLALM(41)SL	0	0	1			REV__ENSG00000167359|ENST00000380211|OR51I1	REV__ENSG00000167359|ENST00000380211|OR51I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.2698059082031	2	446.725861	891.437169	-0.32098	-0.00014339	3.3648	0.0015032	3.0439	0.0013598	446.72725667115736	65.52	0.89586	65.247	64.901	65.796	-0.27282					57	24	4	0	0	0	0.027866	1	7731	7731		40.778	6.6056	1	1354600	+		8020	26133	5214	5229	9585	9585		777			-0.012892564825051522
DNLCYLVTI	9	Unmodified	_DNLCYLVTI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2696533203125	2	527.267893	1052.52123	-0.34056	-0.00017957	4.167	0.0021971	3.8264	0.0020175	527.2696040193798	54.674	1.3888	54.524	53.984	55.373	-0.15036					115	39	6	0	0	0	0.15366	2	5968	5957;5968		98.629	16.389	1	7730700			8021	4475	5215	5230	9586;9587	9587					-0.002927253855887102
DNLGALVRG	9	Unmodified	_DNLGALVRG_					0	0	0		TUFM|p.G322R|1|0.14|ENSG00000178952|chr16:28844060-28844060|C/T|missense_variant;ENST00000569217.1_1_16:28854298-28855510:-|nuORF;ENSG00000178952|ENST00000313511|TUFM	TUFM|p.G322R|1|0.14|ENSG00000178952|chr16:28844060-28844060|C/T|missense_variant	TUFM|p.G322R|1|0.14|ENSG00000178952|chr16:28844060-28844060|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7661437988281	2	457.756341	913.498129	-0.30544	-0.00013982	-1.6436	-0.00075237	-1.949	-0.00089218	457.75606310955686	20.787	2.3559	20.682	19.932	22.287	-0.10477					122	48	5	0	0	0	0.02435	1	759	759		51.335	15.717	1	10305000			8022	8849	5216	5231	9588	9588					0.03792016611964755
DNLHIFLL	8	Unmodified	_DNLHIFLL_					0	0	0		ENST00000413816.6_3_12:129383828-129431963:+|nuORF;GLT1D1|p.V268Yfs*13|1|0.36|ENSG00000151948|chr12:128957565-128957565|G/-|frameshift_variant;ENSG00000151948|ENST00000442111|GLT1D1	ENST00000413816.6_3_12:129383828-129431963:+|nuORF	ENST00000413816.6_3_12:129383828-129431963:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2528991699219	2	492.779285	983.544017	-0.99388	-0.00048977	4.0335	0.0019876	3.0396	0.0014979	492.7811363352402	55.545	0.66196	55.643	55.371	56.033	0.098015					32	17	3	0	0	0	0.027866	1	6032	6032		38.806	0	1	304960			8023	6242	5217	5232	9589	9589					0.051586617941893564
DNLKKSIL	8	Unmodified	_DNLKKSIL_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.8125915527344	2	465.784567	929.554582	-0.71924	-0.00033501	1.4237	0.00066315	0.7045	0.00032814	465.78482587333076	38.325	1.3494	38.104	37.229	38.579	-0.22149					73	36	4	0	0	0	0.027866	1	3118	3118		51.335	5.3632	1	1363000	+		8024	29195	5218	5233	9590	9590					0.08698644448622872
DNLKLKTHT	9	Unmodified	_DNLKLKTHT_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.3037719726562	2	535.303655	1068.59276	-1.048	-0.00056098	0.27725	0.00014841	-0.77072	-0.00041257	535.3037373816776	35.069	0.86189	35.069	34.746	35.608	0					58	22	4	0	0	0	0.053401	1	2660	2660		127.46	3.3816	1	3097900			8025	7551	5219	5234	9591	9591					0.061205303632732466
DNLLRPEALE	10	Unmodified	_DNLLRPEALE_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	ENSG00000072071|ENST00000361434|ADGRL1;ENSG00000117114|ENST00000686636|ADGRL2	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	584.8373413085938	2	585.311677	1168.6088	0.45465	0.00026611	-1.1562	-0.00067671	-0.7015	-0.0004106	585.3110007234184	52.926	0.44217	53.022	52.753	53.195	0.095669					20	11	2	0	0	0	0.03519	1	5596	5596		41.427	2.1738	1	272920			8026	1465;3607	5220	5235	9592	9592					0.031241918095247456
DNLLRYAQD	9	Unmodified	_DNLLRYAQD_					0	0	0			REV__nc|ENSG00000292336|P46597-2|ASMT	REV__nc|ENSG00000292336|P46597-2|ASMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3033447265625	2	554.275095	1106.53564	-0.30497	-0.00016904	4.4014	0.0024396	4.0965	0.0022706	554.7805442622982	36.526	0.466	36.526	36.298	36.764	0					14	12	2	0	0	0	0.024337	1	2877	2877		49.536	0	1	95288	+		8027	28181	5221	5236	9593	9593					-0.013369369131169151
DNLMRIRI	8	Unmodified	_DNLMRIRI_					0	0	0			REV__ENSG00000177694|ENST00000454872|NAALADL2	REV__ENSG00000177694|ENST00000454872|NAALADL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7991943359375	2	515.794943	1029.57533	-0.59507	-0.00030694	-0.88524	-0.0004566	-1.4803	-0.00076354	516.2961544999514	45.34	0.3791	45.241	44.977	45.356	-0.099445					23	10	3	0	0	0	0.027866	1	4295	4295		30.504	8.8013	1	238880	+		8028	27139	5222	5237	9594	9594					0.061729115566322434
DNLRASDL	8	Unmodified	_DNLRASDL_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2;ENST00000521949.1_1_8:99244015-99248416:-|nuORF;ENST00000520545.5_1_8:99229439-99248416:-|nuORF	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2300720214844	2	452.230156	902.445759	0.084603	3.826E-05	-0.23754	-0.00010742	-0.15294	-6.9162E-05	452.2299920048317	26.343	0.57254	26.343	26.001	26.573	0					25	13	2	0	0	0	0.38451	1	1337	1337		99.375	6.1795	1	3233800			8029	2563	5223	5238	9595	9595					-0.009365665216591879
DNLSGDRLES	10	Unmodified	_DNLSGDRLES_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.3011474609375	2	553.259642	1104.50473	-0.23557	-0.00013033	-2.1188	-0.0011722	-2.3544	-0.0013026	553.258324651297	54.119	0.59334	54.119	53.835	54.428	0					38	16	3	0	0	0	0.03519	1	5914	5914		28.081	0	1	1139400	+		8030	27786	5224	5239	9596	9596					-0.043341350179844085
DNLVFTQIFN	10	Unmodified	_DNLVFTQIFN_					0	0	0		ENST00000274711.6_1_5:138208179-138208284:-|nuORF	ENST00000274711.6_1_5:138208179-138208284:-|nuORF	ENST00000274711.6_1_5:138208179-138208284:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5537414550781	3	404.208273	1209.60299	-0.48142	-0.00019459	2.6318	0.0010638	2.1504	0.00086921	404.2095931505981	29.296	0.68991	29.051	28.709	29.399	-0.24524					23	15	2	0	0	0	0.03519	1	1808	1808		23.378	7.4573	1	36683			8031	11682	5225	5240	9597	9597					0.006570932978547717
DNLVRIVP	8	Unmodified	_DNLVRIVP_					0	0	0		ENSG00000187783|ENST00000389583|TMEM72;nc|ENSG00000187783|A0PK05-2|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.287841796875	2	463.276909	924.539266	1.3063	0.00060519	-1.0848	-0.00050255	0.22156	0.00010265	463.2762416611752	59.453	0.68882	59.253	58.888	59.577	-0.20016					30	18	2	0	0	0	0.027866	1	6796	6796		49.442	5.3247	1	751170			8032	9660	5226	5241	9598	9598					0.0739777765143117
DNLYKLLN	8	Unmodified	_DNLYKLLN_					0	0	0			REV__ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	REV__ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.3132019042969	2	496.7742	991.533846	-0.52757	-0.00026209	0.49948	0.00024813	-0.028093	-1.3956E-05	496.7742368761925	73.196	0.80396	73.006	72.633	73.436	-0.19026					39	19	3	0	0	0	0.027866	1	8629	8629		37.159	0	1	1004100	+		8033	27151	5227	5242	9599	9599					0.03774054068958321
DNLYWTDD	8	Unmodified	_DNLYWTDD_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.316650390625	2	521.211629	1040.40871	-0.98436	-0.00051306	0.55093	0.00028715	-0.43343	-0.00022591	521.211822614086	33.498	3.3748	33.498	31.789	35.164	0					138	88	2	0	0	0	0.027866	1	2163	2163		24.203	0	1	333620			8034	3974	5228	5243	9600	9600					-0.10988282858102139
DNLYWTDD	8	Unmodified	_DNLYWTDD_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.211629	1040.40871	-0.033444	-1.7431E-05	-0.25616	-0.00013351	-0.28961	-0.00015095	521.2112914068969	33.487	2.3839	33.544	31.753	34.137	0.056572	0.022535	-0.00065374	NaN	26.693	99	61	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360950			8035	3974	5228	5243							-0.10988282858102139
DNMIKKVIQ	9	Unmodified	_DNMIKKVIQ_					0	0	0			REV__ENST00000277905.6_1_10:118891811-118897401:-|nuORF	REV__ENST00000277905.6_1_10:118891811-118897401:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.290283203125	2	544.810259	1087.60597	-0.62954	-0.00034298	-0.089534	-4.8779E-05	-0.71907	-0.00039176	544.8100244484933	50.828	0.67084	50.828	50.577	51.248	0					37	18	3	0	0	0	0.024397	1	5349	5349		47.657	13.485	1	1373700	+		8036	29860	5229	5244	9601	9601					0.06566645150996919
DNMQVQENFNI	11	Unmodified	_DNMQVQENFNI_					0	0	0		AMBP|p.I29M|1|0.11|ENSG00000106927|chr9:114078123-114078123|G/C|missense_variant	AMBP|p.I29M|1|0.11|ENSG00000106927|chr9:114078123-114078123|G/C|missense_variant	AMBP|p.I29M|1|0.11|ENSG00000106927|chr9:114078123-114078123|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2819519042969	3	451.203081	1350.58741	-0.29296	-0.00013218	1.857	0.00083787	1.564	0.00070568	451.2043065300593	51.432	0.57573	51.285	50.935	51.511	-0.14735					47	15	4	0	0	0	0.02477	1	5401	5401		17.167	9.4873	1	660660			8037	82	5230	5245	9602	9602					-0.07385561281489572
DNMYMSTP	8	Unmodified	_DNMYMSTP_					0	0	0			REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF	REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7353820800781	2	479.685878	957.357204	-0.084529	-4.0547E-05	1.3798	0.00066185	1.2952	0.00062131	479.68644515576506	60.165	0.21952	59.916	59.8	60.019	-0.24842					8	5	2	0	0	0	0.027866	1	6679	6679		25.574	0	1	42042	+		8038	20556	5231	5246	9603	9603					-0.12318066147997797
DNNKRLVAL	9	Unmodified	_DNNKRLVAL_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2;ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.8029174804688	2	521.803823	1041.59309	-0.48842	-0.00025486	0.43595	0.00022748	-0.052468	-2.7378E-05	521.8039729906804	39.759	0.64761	39.61	39.357	40.004	-0.1497					31	16	2	0	0	0	0.091713	2	3391	3391;3404		113.41	52.44	1	2744500			8039	1750;14984	5232	5247	9604;9605	9604					0.073959500831279
DNNKRLVAL	9	Unmodified	_DNNKRLVAL_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2;ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.8018188476562	2	521.803823	1041.59309	-0.047188	-2.4623E-05	0.19257	0.00010048	0.14538	7.5861E-05	521.8038354018726	39.914	0.77039	39.689	39.38	40.15	-0.225					35	19	2	0	0	0	0.14024	3	3397	3397;3406;3419		101.6	27.346	1	2424700			8040	1750;14984	5232	5247	9606;9607;9608	9606					0.073959500831279
DNNKRLVAL	9	Unmodified	_DNNKRLVAL_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2;ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.802978515625	2	521.803823	1041.59309	-0.19074	-9.9529E-05	0.45864	0.00023932	0.2679	0.00013979	521.8039699427699	39.872	0.84398	39.642	39.391	40.235	-0.23021					39	21	2	0	0	0	0.091713	2	3390	3390;3402		113.41	51.304	1	2378900			8041	1750;14984	5232	5247	9609;9610	9609					0.073959500831279
DNNLTRIVG	9	Unmodified	_DNNLTRIVG_					0	0	0		ENSG00000126218|ENST00000375559|F10;ENST00000477269.5_1_13:113777169-113798523:+|nuORF	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8005676269531	2	501.272355	1000.53016	-0.045544	-2.283E-05	4.4192	0.0022152	4.3736	0.0021924	501.2742074823425	46.453	0.94476	46.504	45.965	46.91	0.051399					55	26	3	0	0	0	0.024021	1	4589	4589		49.442	4.4193	1	1598900			8042	4184	5233	5248	9611	9611					0.02991384295091848
DNNLTRIVG	9	Unmodified	_DNNLTRIVG_					0	0	0		ENSG00000126218|ENST00000375559|F10;ENST00000477269.5_1_13:113777169-113798523:+|nuORF	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.272355	1000.53016	-1.0077	-0.00050513	7.4516	0.0037353	6.4439	0.0032302	501.2739874245367	46.284	0.41091	46.082	45.819	46.23	-0.20226	-0.28206	0.0025998	NaN	49.442	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156070			8043	4184	5233	5248							0.02991384295091848
DNPKWSMV	8	Unmodified	_DNPKWSMV_					0	0	0		ENSG00000151500|ENST00000341541|THYN1;ENST00000533975.1_1_11:134119036-134122923:-|nuORF	ENSG00000151500|ENST00000341541|THYN1	ENSG00000151500|ENST00000341541|THYN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.76123046875	2	488.731477	975.448402	-0.20962	-0.00010245	2.108	0.0010302	1.8984	0.0009278	488.7327859364645	36.712	0.23996	36.649	36.588	36.828	-0.063385					6	5	2	0	0	0	0.027866	1	2943	2943		38.806	12.113	1	37471			8044	6207	5234	5249	9612	9612					-0.04030434388357662
DNPRCSKIC	9	Unmodified	_DNPRCSKIC_					0	0	0			REV__ENSG00000077942|ENST00000327858|FBLN1	REV__ENSG00000077942|ENST00000327858|FBLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.268798828125	2	518.239144	1034.46373	-0.4447	-0.00023046	3.5553	0.0018425	3.1106	0.001612	518.2407909530439	57.735	0.50298	57.502	57.237	57.74	-0.23363					27	12	3	0	0	0	0.024466	1	6283	6283		18.262	0	1	543700	+	+	8045	19524	5235	5250	9613	9613					-0.05211890862824475
DNPRNRHFTN	10	Unmodified	_DNPRNRHFTN_					0	0	0		ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF	ENSG00000147457|ENST00000397677|CHMP7	ENSG00000147457|ENST00000397677|CHMP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.5822448730469	3	424.206037	1269.59628	-0.077879	-3.3037E-05	2.5912	0.0010992	2.5133	0.0010662	424.20689976114147	44.097	0.41969	44.134	43.853	44.273	0.0369					22	11	3	0	0	0	0.03519	1	4118	4118		24.232	0	1	245000			8046	5968	5236	5251	9614	9614					-0.0277340681016085
DNPRRGGG	8	Unmodified	_DNPRRGGG_					0	0	0			REV__ENST00000398571.6_2_2:61697786-61697867:-|nuORF	REV__ENST00000398571.6_2_2:61697786-61697867:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.7616271972656	2	414.707183	827.399812	0.81718	0.00033889	-0.17304	-7.176E-05	0.64414	0.00026713	414.7058868288264	87.829	0.46907	87.793	87.573	88.042	-0.035362					12	11	2	0	0	0	0.027866	1	11050	11050		38.806	0	1	80289	+		8047	31802	5237	5252	9615	9615					-0.02079166913233621
DNQLNAQLAA	10	Unmodified	_DNQLNAQLAA_					0	0	0		nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-6|LSR	nc|ENSG00000105699|Q86X29-6|LSR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8139038085938	2	529.26727	1056.51999	-0.89058	-0.00047135	-3.5313	-0.001869	-4.4219	-0.0023404	529.2669803142159	26.942	0.32644	26.942	26.783	27.109	0					19	7	3	0	0	0	0.03519	1	1409	1409		29.17	8.6882	1	61885			8048	2711	5238	5253	9616	9616					-0.006012234301579156
DNQNLQQLWDW	11	Unmodified	_DNQNLQQLWDW_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2874755859375	3	487.224874	1458.65279	-0.75719	-0.00036892	-3.1061	-0.0015134	-3.8633	-0.0018823	487.2231459294352	38.164	0.70109	37.943	37.797	38.498	-0.22149					28	19	3	0	0	0	0.024821	1	3197	3197		14.086	4.4399	1	225570			8049	5410	5239	5254	9617	9617					-0.05818823764161607
DNQNLQQLWDW	11	Unmodified	_DNQNLQQLWDW_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	487.224874	1458.65279	-0.74734	-0.00036412	-2.4688	-0.0012029	-3.2162	-0.001567	487.2233259818436	38.193	0.46423	38.014	37.739	38.203	-0.17929	0.01685	0.00061215	NaN	14.086	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169640			8050	5410	5239	5254							-0.05818823764161607
DNQNLQQLWDW	11	Unmodified	_DNQNLQQLWDW_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	487.224874	1458.65279	-0.36895	-0.00017976	-2.9886	-0.0014561	-3.3576	-0.0016359	487.223248635512	38.253	0.46252	38.034	37.755	38.218	-0.21848	0.037343	-0.00014761	NaN	14.086	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173350			8051	5410	5239	5254							-0.05818823764161607
DNQRSAQFEHT	11	Unmodified	_DNQRSAQFEHT_					0	0	0		ENSG00000172878|ENST00000315796|METAP1D	ENSG00000172878|ENST00000315796|METAP1D	ENSG00000172878|ENST00000315796|METAP1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.76116943359375	3	444.86909	1331.58544	-0.078979	-3.5135E-05	0.23966	0.00010662	0.16068	7.1481E-05	444.869018030792	24.284	0.99559	24.069	23.554	24.55	-0.2151					58	22	4	0	0	0	0.024735	1	1030	1030		21.78	0	1	197450			8052	8316	5240	5255	9618	9618					-0.06708853975101192
DNQTEERR	8	Unmodified	_DNQTEERR_					0	0	0		ENSG00000175538|ENST00000310128|KCNE3	ENSG00000175538|ENST00000310128|KCNE3	ENSG00000175538|ENST00000310128|KCNE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2692260742188	2	524.244326	1046.4741	-1.2617	-0.00066141	-2.0238	-0.001061	-3.2855	-0.0017224	524.243479112944	35.182	0.18189	35.182	35.018	35.2	0					7	4	2	0	0	0	0.027866	1	2664	2664		14.865	3.3539	1	146990			8053	8570	5241	5256	9619	9619					-0.04727868612394559
DNQTNPVLV	9	Unmodified	_DNQTNPVLV_					0	0	0			REV__ENST00000579295.1_1_1:213037039-213043480:+|nuORF	REV__ENST00000579295.1_1_1:213037039-213043480:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.207763671875	2	500.258914	998.503274	-1.2405	-0.00062058	-1.0049	-0.00050271	-2.2454	-0.0011233	500.25849553258	43.712	0.47157	43.493	43.316	43.788	-0.21939					19	12	2	0	0	0	0.024323	1	4042	4042		44.117	0	1	195260	+		8054	25489	5242	5257	9620	9620					0.0039627568389732915
DNRIQLLL	8	Unmodified	_DNRIQLLL_					0	0	0			REV__ENSG00000142230|ENST00000270225|SAE1	REV__ENSG00000142230|ENST00000270225|SAE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.77532958984375	2	492.795466	983.57638	0.35377	0.00017434	-1.1781	-0.00058056	-0.82432	-0.00040622	492.79472754605075	51.595	0.79973	51.595	51.286	52.085	0					43	22	2	0	0	0	0.027866	1	5483	5483		27.882	3.3631	1	1455800	+		8055	24146	5243	5258	9621	9621					0.08393449197183145
DNRKTARAI	9	Unmodified	_DNRKTARAI_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7958984375	2	522.799072	1043.58359	-0.39154	-0.0002047	-3.8831	-0.0020301	-4.2746	-0.0022348	522.7969513620492	39.075	2.5388	38.851	37.759	40.298	-0.22311					131	68	2	0	0	0	0.34489	1	3270	3270		69.628	3.8245	1	2528800			8056	3961	5244	5259	9622	9622					0.06354181797587444
DNRTAKLVL	9	Unmodified	_DNRTAKLVL_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2823486328125	2	515.306198	1028.59784	-0.16574	-8.5409E-05	-1.038	-0.00053487	-1.2037	-0.00062028	515.3048273387983	65.801	0.17227	65.529	65.396	65.568	-0.27282					6	4	2	0	0	0	0.024323	1	7775	7775		44.117	3.5442	1	93435	+		8057	25604	5245	5260	9623	9623					0.08468834225891442
DNSAKNYEGV	10	Unmodified	_DNSAKNYEGV_					0	0	0			REV__ENSG00000101439|ENST00000376925|CST3	REV__ENSG00000101439|ENST00000376925|CST3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.27734375	2	548.74891	1095.48327	-0.2066	-0.00011337	-0.20413	-0.00011202	-0.41074	-0.00022539	548.7489549841753	34.947	0.4052	34.731	34.508	34.913	-0.21555					14	9	2	0	0	0	0.03519	1	2629	2629		31.53	0	1	163600	+		8058	21234	5246	5261	9624	9624					-0.0606552004671812
DNSLKVYTL	9	Unmodified	_DNSLKVYTL_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.267822265625	2	526.784764	1051.55498	-0.26417	-0.00013916	0.33272	0.00017527	0.068547	3.611E-05	526.7845133550268	52.864	0.88098	52.717	52.287	53.168	-0.14723					32	22	2	0	0	0	0.024484	1	5709	5709		30.318	10.321	1	292140			8059	3733	5247	5262	9625	9625					0.03126019377805278
DNSNTRTN	8	Unmodified	_DNSNTRTN_					0	0	0			REV__ENSG00000156218|ENST00000286744|ADAMTSL3	REV__ENSG00000156218|ENST00000286744|ADAMTSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2844543457031	2	461.20467	920.394786	-0.40112	-0.000185	-0.91039	-0.00041988	-1.3115	-0.00060487	461.20411363461795	65.297	0.54649	65.297	64.983	65.529	0					19	15	2	0	0	0	0.027866	1	7707	7707		27.882	7.8855	1	267470	+		8060	25059	5248	5263	9626	9626					-0.06859515566509344
DNSQHPQPAD	10	Unmodified	_DNSQHPQPAD_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.78271484375	2	554.736334	1107.45811	0.23928	0.00013274	3.1596	0.0017527	3.3989	0.0018855	554.7377560240644	82.772	0.77614	82.591	82.374	83.15	-0.18079					30	17	3	0	0	0	0.03519	1	9970	9970		42.864	0	1	232880			8061	8726	5249	5264	9627	9627					-0.09131574849288882
DNSSDTEM	8	Oxidation (M)	_DNSSDTEM(Oxidation (M))_		DNSSDTEM(1)		DNSSDTEM(59)	0	0	1		nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.65673828125	2	457.655829	913.297106	1.1075	0.00050685	0.57924	0.00026509	1.6867	0.00077194	457.6559834456651	59.701	1.6849	59.503	59.173	60.858	-0.19742					106	42	3	0	0	0	0.80469	4	6600	6590;6600;6623;6639		58.782	17.487	1	5392000			8062	8420	5250	5265	9628;9629;9630;9631	9629		349			-0.16301085277530092
DNSSDTEM	8	Oxidation (M)	_DNSSDTEM(Oxidation (M))_		DNSSDTEM(1)		DNSSDTEM(55)	0	0	1		nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.65679931640625	2	457.655829	913.297106	0.48079	0.00022004	1.1765	0.00053845	1.6573	0.00075849	457.65626167963615	59.605	1.7159	59.429	59.117	60.833	-0.1761					100	43	3	0	0	0	0.85395	4	6605	6583;6593;6605;6618		54.776	21.261	1	5157800			8063	8420	5250	5265	9632;9633;9634;9635	9634		349			-0.16301085277530092
DNSSDTEM	8	Oxidation (M)	_DNSSDTEM(Oxidation (M))_		DNSSDTEM(1)		DNSSDTEM(55)	0	0	1		nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.65655517578125	2	457.655829	913.297106	0.12528	5.7336E-05	1.1242	0.00051448	1.2494	0.00057181	457.6564009341363	59.765	1.6867	59.517	59.17	60.857	-0.24842					90	42	4	0	0	0	0.85395	4	6606	6584;6594;6606;6619		54.776	21.261	1	5153100			8064	8420	5250	5265	9636;9637;9638;9639	9638		349			-0.16301085277530092
DNSVIEDLDAH	11	Unmodified	_DNSVIEDLDAH_					0	0	0			REV__nc|ENSG00000179454|Q9NXS3-2|KLHL28	REV__nc|ENSG00000179454|Q9NXS3-2|KLHL28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.880126953125	3	409.854447	1226.54151	1.3854	0.0005678	4.2924	0.0017593	5.6777	0.002327	409.8560555166405	33.08	0.18019	33.137	32.995	33.176	0.056568					5	4	2	0	0	0	0.024732	1	2302	2302		17.167	6.07	1	51912	+		8065	27268	5251	5266	9640	9640					-0.06269883192089765
DNSVLKSL	8	Unmodified	_DNSVLKSL_					0	0	0		ENST00000439176.5_1_5:60224765-60240887:-|nuORF	ENST00000439176.5_1_5:60224765-60240887:-|nuORF	ENST00000439176.5_1_5:60224765-60240887:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7376708984375	2	438.245275	874.475997	0.12448	5.4554E-05	-0.13661	-5.9871E-05	-0.012133	-5.3171E-06	438.24508151643397	61.591	0.37594	61.662	61.474	61.85	0.071125					12	9	2	0	0	0	0.027866	1	7049	7049		27.882	0	1	204990			8066	14328	5252	5267	9641	9641					0.03373792143509036
DNSVVDLET	9	Unmodified	_DNSVVDLET_					0	0	0		ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7558288574219	2	496.232561	990.45057	0.60593	0.00030068	-3.8796	-0.0019252	-3.2737	-0.0016245	496.2286578642925	67.683	0.19055	67.683	67.528	67.719	0					5	4	2	0	0	0	0.024447	1	8084	8084		25.574	0	1	53156			8067	6488	5253	5268	9642	9642					-0.045037271695491654
DNTIHGRID	9	Unmodified	_DNTIHGRID_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2504272460938	2	520.759612	1039.50467	0.16858	8.7788E-05	2.6873	0.0013994	2.8559	0.0014872	520.7597882000409	71.91	0.16281	71.704	71.618	71.78	-0.20614					5	3	2	0	0	0	0.024484	1	8398	8398		17.468	0	1	59985			8068	7523	5254	5269	9643	9643					-0.013500902273335669
DNVCELVI	8	Unmodified	_DNVCELVI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.76885986328125	2	452.725861	903.437169	0.050001	2.2637E-05	4.2273	0.0019138	4.2773	0.0019365	452.7274779520371	27.652	0.43429	27.41	27.119	27.553	-0.24217					14	9	2	0	0	0	0.027866	1	1546	1546		51.335	0	1	35439			8069	6479;18400	5255	5270	9644	9644					-0.01841256482521203
DNVCELVI	8	Unmodified	_DNVCELVI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.76898193359375	2	452.725861	903.437169	-0.69756	-0.0003158	4.4432	0.0020115	3.7456	0.0016957	452.7279949959151	27.484	0.70856	27.316	27.099	27.808	-0.16816					18	16	2	0	0	0	0.027866	1	1497	1497		66.429	5.4573	1	42258			8070	6479;18400	5255	5270	9645	9645					-0.01841256482521203
DNVILQGR	8	Unmodified	_DNVILQGR_					0	0	0			REV__ENST00000526766.1_1_11:112051504-112052349:+|nuORF	REV__ENST00000526766.1_1_11:112051504-112052349:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.766357421875	2	457.756341	913.498129	-0.1035	-4.7377E-05	-1.6402	-0.00075082	-1.7437	-0.0007982	457.75674914909763	22.149	0.56555	22.149	21.819	22.385	0					17	11	2	0	0	0	0.027866	1	763	763		37.159	5.2042	1	37472	+		8071	34458	5256	5271	9646	9646					0.03792016611953386
DNVIRGGKIL	10	Unmodified	_DNVIRGGKIL_					0	0	0			REV__ENST00000519672.1_1_5:146788331-146833150:-|nuORF	REV__ENST00000519672.1_1_5:146788331-146833150:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.26611328125	2	542.827298	1083.64004	-1.2451	-0.00067586	0.77266	0.00041942	-0.47241	-0.00025644	542.8277534031573	53.547	1.2799	53.4	53.132	54.412	-0.14723					89	35	5	0	0	0	0.03519	1	5825	5825		65.465	0	1	2424500	+		8072	22082	5257	5272	9647	9647					0.10156809634281672
DNVQKEVK	8	Unmodified	_DNVQKEVK_					0	0	0			REV__nc|ENSG00000112294|P51649-2|ALDH5A1	REV__nc|ENSG00000112294|P51649-2|ALDH5A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.8001403808594	2	480.261456	958.50836	0.11759	5.6476E-05	1.0784	0.00051789	1.196	0.00057437	480.262162594616	27.105	0.83307	27.105	26.783	27.616	0					33	21	2	0	0	0	0.027866	1	1440	1440		71.877	0	1	295000	+		8073	36570	5258	5273	9648	9648					0.02744579546526893
DNWSVTNAWA	10	Unmodified	_DNWSVTNAWA_					0	0	0			REV__ENST00000524817.5_1_11:9761894-9761963:+|nuORF	REV__ENST00000524817.5_1_11:9761894-9761963:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.2489013671875	2	582.259445	1162.50434	-0.56372	-0.00032823	1.6805	0.00097847	1.1167	0.00065024	582.2607901416767	80.589	0.65654	80.443	80.076	80.733	-0.146					27	15	2	0	0	0	0.03519	1	9602	9602		58.23	16.803	1	142980	+		8074	34398	5259	5274	9649	9649					-0.07041509947180202
DNWVEQYW	8	Unmodified	_DNWVEQYW_					0	0	0			REV__nc|ENSG00000149305|O95264-2|HTR3B	REV__nc|ENSG00000149305|O95264-2|HTR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.78955078125	2	570.243264	1138.47197	0.18611	0.00010613	-1.4015	-0.0007992	-1.2154	-0.00069307	570.2423726462184	77.619	0.7905	77.408	77.165	77.956	-0.21087					31	18	2	0	0	0	0.027866	1	9621	9621		35.618	10.044	1	496000	+		8075	24670	5260	5275	9650	9650					-0.09172297350210101
DNYNRELK	8	Unmodified	_DNYNRELK_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.3023681640625	2	526.261988	1050.50942	-0.33378	-0.00017565	-0.223	-0.00011736	-0.55678	-0.00029301	526.2617102418566	72.282	0.55472	72.282	71.978	72.533	0					20	13	2	0	0	0	0.027866	1	8778	8778		7.1934	0	1	258800			8076	7771	5261	5276	9651	9651					-0.013812060845793894
DNYTLDLW	8	Unmodified	_DNYTLDLW_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R;IL4R|p.R198Hfs*3|1|0.08|ENSG00000077238|chr16:27352618-27352621|AGGG/-|frameshift_variant;nc|ENSG00000077238|P24394-2|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7767944335938	2	520.24019	1038.46583	-1.2572	-0.00065406	-0.345	-0.00017948	-1.6022	-0.00083355	520.7435182606571	28.236	0.24402	28.236	28.074	28.318	0					7	5	2	0	0	0	0.027866	1	1629	1629		27.882	7.8855	1	17994			8077	1605	5262	5277	9652	9652					-0.051868155817146544
DNYYKTPL	8	Unmodified	_DNYYKTPL_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.30767822265625	2	507.250557	1012.48656	-1.0149	-0.00051479	-0.30492	-0.00015467	-1.3198	-0.00066946	507.25045158654615	83.689	0.43402	83.689	83.52	83.954	0					18	9	3	0	0	0	0.027866	1	10503	10503		23.042	0	1	57596			8078	4629	5263	5278	9653	9653					-0.019182252020527812
DNYYMSEGY	9	Unmodified	_DNYYMSEGY_					0	0	0			REV__ENSG00000173914|ENST00000310046|RBM4B	REV__ENSG00000173914|ENST00000310046|RBM4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.2743530273438	2	571.210772	1140.40699	0.439	0.00025076	-3.3348	-0.0019048	-2.8958	-0.0016541	571.7101994722515	56.77	0.27483	56.545	56.307	56.582	-0.2248					9	6	2	0	0	0	0.024541	1	6123	6123		10.866	0	1	72443	+		8079	26820	5264	5279	9654	9654					-0.1575965993833961
DPACGPLFY	9	Unmodified	_DPACGPLFY_					0	0	0		ENSG00000226490|ENST00000643770|C8orf90	ENSG00000226490|ENST00000643770|C8orf90	ENSG00000226490|ENST00000643770|C8orf90	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2977294921875	2	491.720578	981.426604	-0.6514	-0.00032031	2.4477	0.0012036	1.7963	0.00088329	491.7212970384652	60.902	0.47321	60.648	60.378	60.852	-0.25373					19	11	3	0	0	0	0.024293	1	6758	6758		42.474	0	1	116610			8080	10664	5265	5280	9655	9655					-0.06485239136929977
DPAEHAAFL	9	Unmodified	_DPAEHAAFL_					0	0	0		ENSG00000213199|ENST00000349064|ASIC3;nc|ENSG00000213199|Q9UHC3-2|ASIC3;nc|ENSG00000213199|Q9UHC3-3|ASIC3;nc|ENSG00000213199|Q9UHC3-4|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.30596923828125	2	485.735074	969.455596	0.039186	1.9034E-05	-1.0344	-0.00050242	-0.99517	-0.00048339	485.73674018489595	73.236	0.24956	72.965	72.801	73.05	-0.27126					7	5	2	0	0	0	0.024386	1	8884	8884		42.474	23.114	1	44873			8081	10494	5266	5281	9656	9656					-0.03035378516290166
DPAGEVGRVQ	10	Unmodified	_DPAGEVGRVQ_					0	0	0		ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7850952148438	2	514.261988	1026.50942	-0.69424	-0.00035702	-1.4718	-0.00075687	-2.166	-0.0011139	514.2602090017942	73.344	0.18489	73.353	73.217	73.402	0.0096512					9	4	3	0	0	0	0.03519	1	8859	8859		27.882	5.9224	1	47548			8082	6912	5267	5282	9657	9657					-0.0027720608457002527
DPAHDRRH	8	Unmodified	_DPAHDRRH_					0	0	0			REV__nc|ENSG00000214022|Q9BWE0|REPIN1	REV__nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.77996826171875	2	502.244464	1002.47437	-0.34302	-0.00017228	2.8408	0.0014268	2.4978	0.0012545	502.24582376787987	52.975	0.51643	52.975	52.75	53.267	0					34	13	3	0	0	0	0.027866	1	5750	5750		68.787	17.594	1	615850	+		8083	28765	5268	5283	9658	9658					-0.026764041018623175
DPAKRITL	8	Unmodified	_DPAKRITL_					0	0	0		ENST00000461981.5_1_2:201718031-201721754:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000461981.5_1_2:201718031-201721754:-|nuORF	ENST00000461981.5_1_2:201718031-201721754:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.24822998046875	2	457.276909	912.539266	-0.63253	-0.00028924	1.2019	0.00054959	0.56935	0.00026035	457.2772671255039	30.885	0.32997	30.885	30.717	31.047	0					11	7	2	0	0	0	0.027866	1	1995	1995		24.203	0	1	70444			8084	916	5269	5284	9659	9659					0.07949777651424483
DPALLDRHGDS	11	Unmodified	_DPALLDRHGDS_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8563842773438	2	598.288734	1194.56291	-1.3121	-0.00078501	-1.5712	-0.00094001	-2.8833	-0.001725	598.2876542097176	94.017	0.9341	93.878	93.615	94.549	-0.13882					33	21	3	0	0	0	0.024804	1	11560	11560		56.434	0	1	298830			8085	1601	5270	5285	9660	9660					-0.026584533727145754
DPALLRARA	9	Unmodified	_DPALLRARA_					0	0	0		ENST00000596657.1_1_19:6373528-6374597:+|nuORF;ENST00000245812.7_1_19:6372800-6374597:+|nuORF	ENST00000596657.1_1_19:6373528-6374597:+|nuORF	ENST00000596657.1_1_19:6373528-6374597:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2873229980469	2	491.793258	981.571963	0.20409	0.00010037	4.3467	0.0021377	4.5508	0.002238	491.7952721203037	68.001	0.80972	68.001	67.831	68.641	0					34	20	2	0	0	0	0.024427	1	8114	8114		34.173	3.6689	1	327520			8086	11315	5271	5286	9661	9661					0.08043984774269575
DPALPRLAIQL	11	Unmodified	_DPALPRLAIQL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	603.8574829101562	2	603.86388	1205.71321	-0.25459	-0.00015374	-4.4469	-0.0026853	-4.7015	-0.0028391	604.3652124191279	98.898	1.4284	98.908	98.315	99.743	0.010239					67	32	4	0	0	0	0.97926	1	12637	12637		41.427	5.8083	1	149340			8087	2021	5272	5287	9662	9662					0.11857938356888553
DPALRDQV	8	Unmodified	_DPALRDQV_					0	0	0		ENST00000596626.1_1_19:17392705-17393630:+|nuORF	ENST00000596626.1_1_19:17392705-17393630:+|nuORF	ENST00000596626.1_1_19:17392705-17393630:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.26300048828125	2	457.240524	912.466495	0.48719	0.00022276	4.3332	0.0019813	4.8204	0.0022041	457.24247811258067	84.243	1.1995	84.106	83.547	84.747	-0.13789					35	27	2	0	0	0	0.027866	1	10159	10159		27.882	0	1	108200			8088	17434	5273	5288	9663	9663					0.0067602385800000775
DPARCLRLD	9	Unmodified	_DPARCLRLD_					0	0	0			REV__ENSG00000225556|ENST00000694868|C2CD4D	REV__ENSG00000225556|ENST00000694868|C2CD4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.342041015625	2	529.774208	1057.53386	-1.2536	-0.00066411	0.081532	4.3194E-05	-1.172	-0.00062092	529.7742947578714	84.012	0.39132	83.939	83.743	84.134	-0.072769					13	8	2	0	0	0	0.024506	1	10483	10483		30.504	11.144	1	112460	+		8089	28865	5274	5289	9664	9664					0.007397307972951239
DPASISIKI	9	Unmodified	_DPASISIKI_					0	0	0			REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|35|2|anti-sense	REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|35|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.288818359375	2	472.276575	942.538597	0.64035	0.00030242	0.19234	9.0837E-05	0.83269	0.00039326	472.2763073199642	93.909	0.3597	93.909	93.687	94.047	0					14	8	2	0	0	0	0.024374	1	11946	11946		40.778	3.6191	1	176760	+		8090	36203	5275	5290	9665	9665					0.06502938211713172
DPASISIKI	9	Unmodified	_DPASISIKI_					0	0	0			REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|35|2|anti-sense	REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|35|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.287841796875	2	472.276575	942.538597	-0.1228	-5.7997E-05	0.085277	4.0274E-05	-0.037527	-1.7723E-05	472.2763884298999	93.903	0.40476	93.909	93.646	94.051	0.0059814					16	9	2	0	0	0	0.02435	1	11879	11879		26.693	0	1	160150	+		8091	36203	5275	5290	9666	9666					0.06502938211713172
DPAVGTRSDL	10	Unmodified	_DPAVGTRSDL_					0	0	0			REV__ENSG00000112972|ENST00000325110|HMGCS1	REV__ENSG00000112972|ENST00000325110|HMGCS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2796020507812	2	515.76182	1029.50909	0.20563	0.00010606	0.33885	0.00017476	0.54448	0.00028082	516.2624026466399	82.35	0.43476	82.169	82.07	82.505	-0.18079					15	9	2	0	0	0	0.03519	1	9935	9935		29.17	8.2231	1	49924	+		8092	22031	5276	5291	9667	9667					-0.004486258044153146
DPAVIKVR	8	Unmodified	_DPAVIKVR_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.5613098144531	2	449.279452	896.544351	-0.36365	-0.00016338	-0.93109	-0.00041832	-1.2947	-0.0005817	449.278773106556	48.264	0.36873	48.166	47.817	48.186	-0.097553					11	9	2	0	0	0	0.027866	1	4735	4735		30.504	0	1	55785			8093	7478	5277	5292	9668	9668					0.09194081514056052
DPAVIKVR	8	Unmodified	_DPAVIKVR_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.279452	896.544351	-0.33519	-0.00015059	0.92766	0.00041678	0.59247	0.00026619	449.280153229244	48.488	0.10329	48.488	48.413	48.516	0	0.16101	0.0013443	NaN	30.504	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33092			8094	7478	5277	5292							0.09194081514056052
DPAWLMVDTVI	11	Unmodified	_DPAWLMVDTVI_					0	0	0		ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.70391845703125	3	420.54953	1258.62676	-0.99978	-0.00042046	-4.2961	-0.0018067	-5.2959	-0.0022272	420.5486897032411	33.912	0.19798	33.736	33.583	33.781	-0.17557					6	4	2	0	0	0	0.024727	1	2422	2422		23.378	0	1	30392			8095	5918	5278	5293	9669	9669					0.007791907400132914
DPAWRAPE	8	Unmodified	_DPAWRAPE_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7820739746094	2	471.227417	940.44028	0.20136	9.4886E-05	0.66545	0.00031358	0.86681	0.00040847	471.2271647692628	44.017	0.6327	44.054	43.743	44.375	0.036903					44	17	3	0	0	0	0.027866	1	4105	4105		53.351	3.3269	1	549230			8096	18258	5279	5294	9670	9670					-0.032322453134838725
DPCGHLVAR	9	Unmodified	_DPCGHLVAR_					0	0	0			REV__ENST00000235310.7_1_1:11734653-11734812:-|nuORF	REV__ENST00000235310.7_1_1:11734653-11734812:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2711181640625	2	484.242544	966.470534	-0.72199	-0.00034962	1.6558	0.00080179	0.93377	0.00045217	484.24384590210116	31.322	0.2552	31.322	31.173	31.428	0					7	5	2	0	0	0	0.024263	1	2075	2075		34.173	0.65696	1	31018	+		8097	29428	5280	5295	9671	9671					-0.014042099199514269
DPCGHLVAR	9	Unmodified	_DPCGHLVAR_					0	0	0			REV__ENST00000235310.7_1_1:11734653-11734812:-|nuORF	REV__ENST00000235310.7_1_1:11734653-11734812:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.242544	966.470534	-0.43599	-0.00021113	5.7134	0.0027667	5.2774	0.0025555	484.2447445543872	30.923	0.25302	30.935	30.831	31.084	0.011797	-0.19355	0.0017494	NaN	34.173	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69584	+		8098	29428	5280	5295							-0.014042099199514269
DPCLRKYK	8	Unmodified	_DPCLRKYK_					0	0	0		ENSG00000113070|ENST00000230990|HBEGF	ENSG00000113070|ENST00000230990|HBEGF	ENSG00000113070|ENST00000230990|HBEGF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7894287109375	2	511.776219	1021.53789	-0.6551	-0.00033527	-4.3754	-0.0022392	-5.0305	-0.0025745	511.7735990411032	82.483	0.72885	82.509	82.273	83.002	0.025711					25	16	2	0	0	0	0.027866	1	10256	10256		31.955	11.958	1	446170			8099	3258	5281	5296	9672	9672					0.02797820291016251
DPDFVDNLKE	10	Unmodified	_DPDFVDNLKE_					0	0	0			REV__ENSG00000114120|ENST00000324194|SLC25A36	REV__ENSG00000114120|ENST00000324194|SLC25A36	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.2789916992188	2	596.280043	1190.54553	-0.23008	-0.00013719	0.89825	0.00053561	0.66817	0.00039841	596.2804662078306	102.93	4.4498	102.93	100.72	105.17	-0.0046082					241	111	3	0	0	0	1.0122	1	13022	13022		44.377	0.26039	1	301850	+		8100	22106	5282	5297	9673	9673					-0.04211793698368638
DPDGSQIEKI	10	Unmodified	_DPDGSQIEKI_					0	0	0		nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.2638549804688	2	551.274761	1100.53497	-0.25504	-0.0001406	-0.97776	-0.00053902	-1.2328	-0.00067961	551.2740423394631	61.859	0.7473	61.632	61.336	62.084	-0.22663					23	19	2	0	0	0	0.03519	1	7115	7115		41.427	14.734	1	138830			8101	9850	5283	5298	9674	9674					-0.01127776352791443
DPDHGDLV	8	Unmodified	_DPDHGDLV_					0	0	0			REV__ENSG00000184227|ENST00000311148|ACOT1	REV__ENSG00000184227|ENST00000311148|ACOT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2664489746094	2	434.195782	866.377011	2.4219	0.0010516	-0.36967	-0.00016051	2.0522	0.00089105	434.1955578046326	24.669	0.69928	24.488	24.156	24.855	-0.18089					25	15	3	0	0	0	0.027866	1	1056	1056		73.975	5.49	1	115630	+		8102	22471	5284	5299	9675	9675					-0.06152230821373905
DPDLPVVVV	9	Unmodified	_DPDLPVVVV_					0	0	0		ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.30572509765625	2	476.771126	951.527698	-0.10104	-4.8175E-05	-2.2669	-0.0010808	-2.3679	-0.001129	476.76985548324564	91.651	0.47647	91.651	91.383	91.86	0					14	10	2	0	0	0	0.023596	1	11591	11591		63.306	26.147	1	73664			8103	8557	5285	5300	9676	9676					0.049995358374417265
DPDLPVVVV	9	Unmodified	_DPDLPVVVV_					0	0	0		ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.771126	951.527698	-1.0756	-0.00051279	-2.5029	-0.0011933	-3.5784	-0.0017061	476.77023014733425	91.622	0.56016	91.473	91.225	91.785	-0.1487	-0.10977	0.0001946	NaN	63.306	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92072			8104	8557	5285	5300							0.049995358374417265
DPDLPVVVV	9	Unmodified	_DPDLPVVVV_					0	0	0		ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	476.771126	951.527698	-0.37108	-0.00017692	-2.3673	-0.0011286	-2.7383	-0.0013056	476.7700613682022	91.622	0.64965	91.499	91.328	91.978	-0.12341	-0.083901	0.0003239	NaN	63.306	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58485			8105	8557	5285	5300							0.049995358374417265
DPDLPVVVV	9	Unmodified	_DPDLPVVVV_					0	0	0		ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.771126	951.527698	0.25782	0.00012292	-3.2219	-0.0015361	-2.9641	-0.0014132	476.7696406559989	91.726	0.47736	91.587	91.316	91.794	-0.13942	0.0039534	-0.00049105	NaN	63.306	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53150			8106	8557	5285	5300							0.049995358374417265
DPDLTVAVFHL	11	Unmodified	_DPDLTVAVFHL_					0	0	0			REV__ENSG00000164010|ENST00000372517|ERMAP	REV__ENSG00000164010|ENST00000372517|ERMAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	614.7953491210938	2	613.824421	1225.63429	-2.0103	-0.001234	-3.34	-0.0020502	-5.3503	-0.0032841	613.8221304441113	54.037	1.2231	53.9	53.319	54.543	-0.13617					73	36	3	0	0	0	0.024732	1	5780	5780		32.812	4.9302	1	525460	+		8107	25670	5286	5301	9677	9677					0.030496663319581785
DPDRCESCYG	10	Carbamidomethyl (C)	_DPDRC(Carbamidomethyl (C))ESCYG_	DPDRC(0.5)ESC(0.5)YG		DPDRC(0)ESC(0)YG		0	1	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000489071.5_1_20:34135089-34136623:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.2161865234375	2	601.216063	1200.41757	-0.7388	-0.00044418	0.79199	0.00047615	0.053181	3.1974E-05	601.2164119800121	30.932	0.66338	30.691	30.41	31.073	-0.24109					38	15	3	0	0	0	0.82838	1	2010	2010		58.782	19.976	2	1627800			8108	4171	5287	5302	9678	9678	53;54				-0.17462000555565282
DPDTANLDL	9	Unmodified	_DPDTANLDL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2586975097656	2	487.227279	972.440005	-0.30071	-0.00014651	0.94886	0.00046231	0.64816	0.0003158	487.2277140102276	45.455	1.0896	45.244	44.831	45.921	-0.21109					55	30	2	0	0	0	0.024292	1	4237	4237		58.782	2.0609	1	625510	+		8109	28106	5288	5303	9679	9679					-0.047317098239886946
DPDTANLDL	9	Unmodified	_DPDTANLDL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.227279	972.440005	-0.50375	-0.00024544	0.86322	0.00042058	0.35947	0.00017514	487.22772602060377	45.12	1.0927	45.12	44.725	45.818	0	-0.060241	-0.00013576	NaN	79.451	59	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	927890	+		8110	28106	5288	5303							-0.047317098239886946
DPDTANLDL	9	Unmodified	_DPDTANLDL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.227279	972.440005	-0.67073	-0.0003268	1.1714	0.00057074	0.50068	0.00024395	487.2278468919719	45.276	1.0947	45.127	44.697	45.792	-0.1488	-0.053447	0.00016455	NaN	79.451	64	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	881320	+		8111	28106	5288	5303							-0.047317098239886946
DPDTANLDL	9	Unmodified	_DPDTANLDL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.227279	972.440005	-0.60573	-0.00029513	1.0656	0.00051918	0.45985	0.00022405	487.2277937290785	45.095	1.3341	45.139	44.722	46.056	0.04388	-0.041191	6.1425E-05	NaN	79.451	71	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858170	+		8112	28106	5288	5303							-0.047317098239886946
DPDTANLDL	9	Unmodified	_DPDTANLDL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.227279	972.440005	-0.49334	-0.00024037	1.113	0.00054227	0.61963	0.0003019	487.22774583311065	45.323	1.0518	45.223	44.906	45.958	-0.099445	0.043138	0.0001076	NaN	79.451	51	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	690140	+		8113	28106	5288	5303							-0.047317098239886946
DPDTANLDL	9	Unmodified	_DPDTANLDL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.227279	972.440005	-0.062507	-3.0455E-05	0.624	0.00030403	0.56149	0.00027358	487.22749512942147	45.481	1.0381	45.229	44.748	45.786	-0.25252	0.048374	-0.00036887	NaN	79.451	50	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562770	+		8114	28106	5288	5303							-0.047317098239886946
DPEEWVAVSD	10	Unmodified	_DPEEWVAVSD_					0	0	0		ENSG00000275520|ENST00000611003|FAM236A;ENSG00000268994|ENST00000596535|FAM236B	ENSG00000275520|ENST00000611003|FAM236A	ENSG00000275520|ENST00000611003|FAM236A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.3160400390625	2	573.751118	1145.48768	-0.74229	-0.00042589	4.1594	0.0023864	3.4171	0.0019606	573.7533511243878	56.748	0.36447	56.846	56.616	56.981	0.097893					16	10	2	0	0	0	0.03519	1	6248	6248		37.812	13.292	1	172470			8115	10991	5289	5304	9680	9680					-0.0792405562381191
DPEKFFSEP	9	Unmodified	_DPEKFFSEP_					0	0	0			REV__WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	REV__WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.7781372070312	2	548.253297	1094.49204	-1.1193	-0.00061367	-1.8258	-0.001001	-2.9451	-0.0016147	548.252225529535	64.507	0.44311	64.244	64.012	64.455	-0.2626					21	11	2	0	0	0	0.02435	1	7560	7560		26.693	0	1	209500	+		8116	19980	5290	5305	9681	9681					-0.05142546410229443
DPEKKATL	8	Unmodified	_DPEKKATL_					0	0	0		ENSG00000154217|ENST00000581322|PITPNC1	ENSG00000154217|ENST00000581322|PITPNC1	ENSG00000154217|ENST00000581322|PITPNC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7793273925781	2	451.2531	900.491647	-0.1273	-5.7443E-05	0.96884	0.00043719	0.84154	0.00037975	451.2536210709338	30.366	0.67856	30.216	29.835	30.513	-0.14952					23	15	2	0	0	0	0.027866	1	1949	1949		17.365	0	1	108170			8117	6391	5291	5306	9682	9682					0.03742078660570769
DPEMEQKM	8	Unmodified	_DPEMEQKM_					0	0	0		ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7665100097656	2	504.21226	1006.40997	-0.051692	-2.6064E-05	2.7875	0.0014055	2.7358	0.0013794	504.7156617376769	63.657	0.37165	63.43	63.291	63.662	-0.22773					14	9	2	0	0	0	0.027866	1	7207	7207		24.203	0	1	102080			8118	8844	5292	5307	9683	9683					-0.0929810808519278
DPENDSYKS	9	Unmodified	_DPENDSYKS_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.3284912109375	2	527.719818	1053.42508	-0.13539	-7.1448E-05	-1.1001	-0.00058052	-1.2354	-0.00065197	527.7191586877874	77.74	0.37965	77.579	77.441	77.821	-0.16196					13	8	2	0	0	0	0.024418	1	9232	9232		37.812	2.1932	1	105620			8119	10058	5293	5308	9684	9684					-0.09949201691983944
DPENIILIL	9	Unmodified	_DPENIILIL_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3056640625	2	520.305332	1038.59611	-0.69967	-0.00036404	0.29519	0.00015359	-0.40448	-0.00021045	520.3054938297144	93.614	1.9055	93.62	92.501	94.406	0.0059814					101	45	5	0	0	0	0.59099	1	11838	11838		53.351	0.41475	1	6622100			8120	656	5294	5309	9685	9685					0.07835780417281057
DPENPECEEI	10	Unmodified	_DPENPECEEI_					0	0	0		ENST00000558995.5_1_14:24543475-24546936:+|nuORF;ENSG00000100884|ENST00000689861|CPNE6;nc|ENSG00000100884|O95741-2|CPNE6	ENST00000558995.5_1_14:24543475-24546936:+|nuORF	ENST00000558995.5_1_14:24543475-24546936:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.2901611328125	2	587.732068	1173.44958	0.021972	1.2914E-05	4.0272	0.0023669	4.0491	0.0023798	587.7342120798545	84.965	0.78804	84.806	84.488	85.276	-0.15869					39	18	5	0	0	0	0.03519	1	10338	10338		36.447	15.5	1	112840			8121	2253	5295	5310	9686	9686					-0.13020309600779
DPERGEKL	8	Unmodified	_DPERGEKL_					0	0	0			REV__ENST00000592188.1_1_19:19387459-19391209:-|nuORF	REV__ENST00000592188.1_1_19:19387459-19391209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.246337890625	2	472.245806	942.47706	0.16122	7.6135E-05	0.058383	2.7571E-05	0.2196	0.00010371	472.24568220934134	22.221	0.98047	22.221	21.868	22.848	0					55	20	4	0	0	0	0.77775	1	769	769		60.972	2.19	1	684890	+		8122	21557	5296	5311	9687	9687					0.003520065124348548
DPERGEKL	8	Unmodified	_DPERGEKL_					0	0	0			REV__ENST00000592188.1_1_19:19387459-19391209:-|nuORF	REV__ENST00000592188.1_1_19:19387459-19391209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2458801269531	2	472.245806	942.47706	0.093499	4.4154E-05	0.14207	6.709E-05	0.23556	0.00011124	472.24574007371564	22.322	0.98825	22.247	21.841	22.829	-0.075296					55	20	4	0	0	0	0.5947	1	758	758		76.774	12.567	1	667420	+		8123	21557	5296	5311	9688	9688					0.003520065124348548
DPETACSLTL	10	Unmodified	_DPETACSLTL_					0	0	0		ENST00000602865.1_1_1:2282646-2283036:-|nuORF	ENST00000602865.1_1_1:2282646-2283036:-|nuORF	ENST00000602865.1_1_1:2282646-2283036:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3137817382812	2	525.244615	1048.47468	0.047553	2.4977E-05	2.5187	0.0013229	2.5663	0.0013479	525.2457246092413	73.038	0.6794	73.047	72.611	73.29	0.0096512					22	16	2	0	0	0	0.03519	1	8865	8865		34.173	3.6689	1	289050			8124	17535	5297	5312	9689	9689					-0.04762210007561407
DPEVLFPK	8	Unmodified	_DPEVLFPK_					0	0	0			REV__ENSG00000171450|ENST00000302625|CDK5R2	REV__ENSG00000171450|ENST00000302625|CDK5R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2755126953125	2	472.758018	943.501483	0.82297	0.00038907	-0.64143	-0.00030324	0.18154	8.5824E-05	472.7577414810424	21.01	0.44296	21.079	20.71	21.153	0.068901					14	8	2	0	0	0	0.027866	1	542	542		17.365	10.629	1	73155	+		8125	26565	5298	5313	9690	9690					0.02747266665949155
DPEVRVLW	8	Unmodified	_DPEVRVLW_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2276916503906	2	507.274367	1012.53418	-0.29239	-0.00014832	-3.6994	-0.0018766	-3.9918	-0.0020249	507.2725307586661	30.023	0.59348	29.873	29.626	30.219	-0.14952					18	13	2	0	0	0	0.027866	1	1899	1899		38.806	3.1879	1	103500	+		8126	22617	5299	5314	9691	9691					0.028414737887942465
DPEYQCRKL	9	Unmodified	_DPEYQCRKL_					0	0	0			REV__ENST00000492368.1_1_10:5924953-5929894:-|nuORF	REV__ENST00000492368.1_1_10:5924953-5929894:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2800903320312	2	576.279323	1150.54409	0.85115	0.0004905	1.8423	0.0010617	2.6934	0.0015522	576.2809980073698	51.41	0.72546	51.299	50.749	51.475	-0.11163					25	18	3	0	0	0	0.024447	1	5210	5210		32.812	0	1	178140	+		8127	23455	5300	5315	9692	9692					-0.0251570626812736
DPFDRHTDQ	9	Unmodified	_DPFDRHTDQ_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.7564697265625	2	565.746702	1129.47885	-0.59723	-0.00033788	3.142	0.0017776	2.5448	0.0014397	565.7477271979013	64.514	0.89781	64.56	64.117	65.015	0.045509					36	23	2	0	0	0	0.024511	1	7472	7472		25.574	0	1	209500			8128	3858	5301	5316	9693	9693					-0.08070984469623
DPFGQPLFV	9	Unmodified	_DPFGQPLFV_					0	0	0			REV__ENST00000541442.5_1_16:31508264-31519694:-|nuORF	REV__ENST00000541442.5_1_16:31508264-31519694:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2779235839844	2	510.263468	1018.51238	-0.28227	-0.00014403	-3.7978	-0.0019379	-4.0801	-0.0020819	510.26132196833623	72.994	0.96919	72.729	72.17	73.139	-0.26479					48	22	3	0	0	0	0.022924	1	8607	8607		73.975	19.198	1	574860	+		8129	24037	5302	5317	9694	9694					0.003866690402333006
DPFLHQQVP	9	Unmodified	_DPFLHQQVP_					0	0	0			REV__ENST00000542454.2_2_14:96706910-96707273:+|nuORF	REV__ENST00000542454.2_2_14:96706910-96707273:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.794921875	2	540.777274	1079.53999	-1.3489	-0.00072946	3.9812	0.002153	2.6323	0.0014235	540.7796840495276	81.408	0.2448	81.277	81.135	81.38	-0.13075					7	5	2	0	0	0	0.024487	1	10099	10099		24.203	1.1603	1	61905	+		8130	34792	5303	5318	9695	9695					0.003405723004561878
DPFLLLRSQ	9	Unmodified	_DPFLLLRSQ_					0	0	0		ENST00000527169.5_1_11:93466273-93470263:-|nuORF;ENST00000323981.6_1_11:93469454-93470302:-|nuORF	ENST00000527169.5_1_11:93466273-93470263:-|nuORF	ENST00000527169.5_1_11:93466273-93470263:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8312377929688	2	544.808574	1087.60259	0.10288	5.6049E-05	-1.2135	-0.00066113	-1.1106	-0.00060508	545.3093216018439	71.133	0.39149	71.133	70.909	71.301	0					23	9	3	0	0	0	0.024456	1	8627	8627		35.152	24.887	1	299280			8131	12248	5304	5319	9696	9696					0.06229718368649628
DPFPFPICI	9	Unmodified	_DPFPFPICI_					0	0	0			REV__ENST00000469196.1_1_3:156806110-156806296:+|nuORF	REV__ENST00000469196.1_1_3:156806110-156806296:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3023681640625	2	524.762246	1047.50994	0.30306	0.00015903	-0.55894	-0.00029331	-0.25588	-0.00013427	524.7619082678481	72.097	1.1591	71.809	71.502	72.661	-0.28858					53	29	3	0	0	0	0.024443	1	8794	8794		19.36	0	1	1082500	+		8132	33127	5305	5320	9697	9697					-0.011915026890847003
DPFRLLAR	8	Unmodified	_DPFRLLAR_					0	0	0			REV__ENST00000559228.5_1_15:59063709-59063856:+|nuORF	REV__ENST00000559228.5_1_15:59063709-59063856:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3056335449219	2	494.290351	986.566149	0.00092274	4.561E-07	-0.97613	-0.00048249	-0.97521	-0.00048204	494.2900118731984	85.574	0.76118	85.379	85.047	85.808	-0.19508					28	17	2	0	0	0	0.027866	1	10345	10345		40.573	1.7665	1	108560	+		8133	35116	5306	5321	9698	9698					0.07232886262602278
DPFRLLAR	8	Unmodified	_DPFRLLAR_					0	0	0			REV__ENST00000559228.5_1_15:59063709-59063856:+|nuORF	REV__ENST00000559228.5_1_15:59063709-59063856:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3057556152344	2	494.290351	986.566149	0.79051	0.00039074	-1.6821	-0.00083146	-0.89162	-0.00044072	494.28956831218153	85.524	0.75982	85.374	85.03	85.79	-0.14967					27	17	2	0	0	0	0.027866	1	10331	10331		33.516	0	1	136820	+		8134	35116	5306	5321	9699	9699					0.07232886262602278
DPGATKGAKV	10	Unmodified	_DPGATKGAKV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7555236816406	2	472.263999	942.513445	0.20105	9.4947E-05	0.50847	0.00024013	0.70952	0.00033508	472.26395081732994	43.1	0.87217	42.961	42.737	43.609	-0.13929					40	23	3	0	0	0	0.03519	1	3980	3980		41.427	0	1	1279100	+		8135	25017	5307	5322	9700	9700					0.03988883409135724
DPGDECEC	8	Unmodified	_DPGDECEC_					0	0	0			REV__GAGE2E|p.Q83H|1|0.04|ENSG00000275113|chrX:49345840-49345840|G/C|missense_variant	REV__GAGE2E|p.Q83H|1|0.04|ENSG00000275113|chrX:49345840-49345840|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2558288574219	2	434.128393	866.242233	0.44972	0.00019523	-4.0497	-0.0017581	-3.5999	-0.0015628	434.126009473234	102.92	0.3134	102.79	102.67	102.98	-0.12724					10	7	2	0	0	0	0.027866	1	12789	12789		13.775	4.3048	1	48363	+		8136	19485	5308	5323	9701	9701					-0.19623795349809825
DPGEQVLSH	9	Unmodified	_DPGEQVLSH_					0	0	0		ENSG00000187987|ENST00000289788|ZSCAN23	ENSG00000187987|ENST00000289788|ZSCAN23	ENSG00000187987|ENST00000289788|ZSCAN23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.82965087890625	2	491.235439	980.456324	-1.1411	-0.00056055	1.6989	0.00083457	0.55781	0.00027402	491.2361293408398	26.034	0.40761	25.798	25.508	25.916	-0.23603					14	9	2	0	0	0	0.024323	1	1307	1307		35.618	0	1	198660			8137	9679	5309	5324	9702	9702					-0.03468583867220332
DPGLFSLLAD	10	Unmodified	_DPGLFSLLAD_					0	0	0			REV__ENST00000478793.1_1_3:113678390-113679949:+|nuORF	REV__ENST00000478793.1_1_3:113678390-113679949:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3135375976562	2	524.27149	1046.52843	-0.43183	-0.00022639	-2.3792	-0.0012473	-2.811	-0.0014737	524.270016496571	73.445	0.12141	73.168	73.092	73.214	-0.2769					4	2	2	0	0	0	0.03519	1	8624	8624		10.265	3.0719	1	29898	+		8138	33377	5310	5325	9703	9703					0.007023304865015234
DPGLRSGAEL	10	Unmodified	_DPGLRSGAEL_					0	0	0			REV__ENSG00000141933|ENST00000359315|TPGS1	REV__ENSG00000141933|ENST00000359315|TPGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7643127441406	2	507.764363	1013.51417	-0.62008	-0.00031486	-0.0938	-4.7628E-05	-0.71388	-0.00036248	507.76434235861836	22.221	1.2893	22.221	21.916	23.206	0					48	27	2	0	0	0	0.82838	1	792	792		58.782	0	1	6504000	+		8139	24125	5311	5326	9704	9704					0.007956780581821477
DPGLRSGAEL	10	Unmodified	_DPGLRSGAEL_					0	0	0			REV__ENSG00000141933|ENST00000359315|TPGS1	REV__ENSG00000141933|ENST00000359315|TPGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.76416015625	2	507.764363	1013.51417	-0.43397	-0.00022036	-0.34241	-0.00017386	-0.77638	-0.00039422	507.76426259909874	22.322	1.2232	22.246	21.698	22.921	-0.075296					49	25	3	0	0	0	0.64538	2	781	745;781		71.877	8.5712	1	6188800	+		8140	24125	5311	5326	9705;9706	9706					0.007956780581821477
DPGLRSGAEL	10	Unmodified	_DPGLRSGAEL_					0	0	0			REV__ENSG00000141933|ENST00000359315|TPGS1	REV__ENSG00000141933|ENST00000359315|TPGS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.764363	1013.51417	-0.69157	-0.00035115	-6.5397	-0.0033206	-7.2313	-0.0036718	507.7611309751692	22.472	0.51095	22.287	21.858	22.369	-0.18539	0.039031	-0.0062928	NaN	71.877	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38468	+		8141	24125	5311	5326							0.007956780581821477
DPGLRSGAEL	10	Unmodified	_DPGLRSGAEL_					0	0	0			REV__ENSG00000141933|ENST00000359315|TPGS1	REV__ENSG00000141933|ENST00000359315|TPGS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.764363	1013.51417	-0.081091	-4.1175E-05	-7.389	-0.0037519	-7.4701	-0.0037931	507.7605766780901	22.491	0.66327	22.289	21.712	22.375	-0.20199	0.040787	-0.0071553	NaN	71.877	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25029	+		8142	24125	5311	5326							0.007956780581821477
DPGPPGPIGSL	11	Unmodified	_DPGPPGPIGSL_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;OLFM2-COL5A3|1|fusion	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.27716064453125	2	503.763832	1005.51311	-0.76582	-0.00038579	4.2619	0.002147	3.4961	0.0017612	503.76601304072835	31.35	0.98606	31.35	31.003	31.989	0					42	23	2	0	0	0	0.024756	1	2063	2063		36.447	0	1	1405900			8143	1689	5312	5327	9707	9707					0.010574636892783928
DPGQLLPLLL	10	Unmodified	_DPGQLLPLLL_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.791015625	2	539.828975	1077.6434	-0.77801	-0.00041999	-1.1089	-0.00059859	-1.8869	-0.0010186	539.8280815285942	65.879	0.422	65.909	65.699	66.121	0.030106					15	10	2	0	0	0	0.03519	1	7753	7753		32.812	13.452	1	248540	+		8144	20838	5313	5328	9708	9708					0.10768059688302856
DPGRCFFFHT	10	Unmodified	_DPGRCFFFHT_					0	0	0			REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L	REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.51971435546875	3	409.518564	1225.53386	0.39308	0.00016097	2.1244	0.00086997	2.5175	0.0010309	409.5194093994418	24.723	0.73743	24.723	24.474	25.211	0					55	16	6	0	0	0	1.1161	1	1107	1107		30.569	2.4874	1	699510	+		8145	36729	5314	5329	9709	9709					-0.06988269202702213
DPGRCSPDPG	10	Unmodified	_DPGRCSPDPG_					0	0	0		ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.82379150390625	2	500.711273	999.407994	-0.25841	-0.00012939	-0.64176	-0.00032133	-0.90016	-0.00045072	500.7107633314196	33.864	0.68792	33.864	33.521	34.209	0					29	17	2	0	0	0	0.03519	1	2455	2455		51.193	3.2771	1	64532			8146	12231	5315	5330	9710	9710					-0.09173400778786345
DPHEYPLW	8	Unmodified	_DPHEYPLW_					0	0	0			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.3160400390625	2	528.742899	1055.47125	-0.37425	-0.00019788	2.8393	0.0015012	2.465	0.0013034	528.7440486715082	66.193	1.5658	65.952	64.883	66.448	-0.24145					59	25	4	0	0	0	0.027866	1	7654	7654		44.531	0	1	549470	+		8147	25055	5316	5331	9711	9711					-0.05427091999240474
DPHFALVRPR	10	Unmodified	_DPHFALVRPR_					0	0	0			REV__ENST00000580420.1_1_18:29522783-29523056:+|nuORF	REV__ENST00000580420.1_1_18:29522783-29523056:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.86309814453125	3	403.228001	1206.66217	0.35497	0.00014313	-0.0095528	-3.852E-06	0.34541	0.00013928	403.5629186390493	27.826	0.59294	27.583	27.291	27.884	-0.24286					23	13	3	0	0	0	0.03519	1	1596	1596		3.6191	0	1	180860	+		8148	35516	5317	5332	9712	9712					0.06711034102681879
DPHGASTVEF	10	Unmodified	_DPHGASTVEF_					0	0	0			REV__ENST00000568056.5_1_17:75082901-75095218:+|nuORF	REV__ENST00000568056.5_1_17:75082901-75095218:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2398071289062	2	530.240721	1058.46689	-0.090946	-4.8223E-05	0.51078	0.00027083	0.41983	0.00022261	530.2409838189699	107.43	1.1014	107.43	106.37	107.47	0.0018311					68	32	3	0	0	0	1.0271	1	13707	13707		42.396	8.2236	1	407140	+		8149	35332	5318	5333	9713	9713					-0.06000601212804213
DPHGPVYVI	9	Unmodified	_DPHGPVYVI_					0	0	0			REV__ENST00000565677.5_1_16:732528-732699:+|nuORF	REV__ENST00000565677.5_1_16:732528-732699:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.779296875	2	498.761092	995.507631	-0.36561	-0.00018235	-3.1666	-0.0015794	-3.5322	-0.0017617	498.7592622617837	65.549	0.41431	65.307	65.085	65.5	-0.24145					11	9	2	0	0	0	0.024466	1	7469	7469		33.516	6.7195	1	28640	+		8150	35283	5319	5334	9714	9714					0.009697848974610679
DPHHRVLSE	9	Unmodified	_DPHHRVLSE_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2754516601562	2	545.275429	1088.53631	-0.48422	-0.00026403	-1.6454	-0.00089717	-2.1296	-0.0011612	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.6504	2	9520	9520;9820		49.442	7.0454	1	63206000	+		8151	27997	5320	5335	9715;9716	9715					-0.004420974733875482
DPHHRVLSE	9	Unmodified	_DPHHRVLSE_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2756958007812	2	545.275429	1088.53631	-0.30268	-0.00016504	-1.8598	-0.0010141	-2.1624	-0.0011791	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.70156	1	9815	9815		45.972	3.108	1	57394000	+		8152	27997	5320	5335	9717	9717					-0.004420974733875482
DPHHRVLSE	9	Unmodified	_DPHHRVLSE_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2761840820312	2	545.275429	1088.53631	-0.96677	-0.00052716	-0.98156	-0.00053522	-1.9483	-0.0010624	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.67687	1	9662	9662		47.657	0	1	52905000	+		8153	27997	5320	5335	9718	9718					-0.004420974733875482
DPHRWVGL	8	Unmodified	_DPHRWVGL_					0	0	0			REV__ENST00000465076.5_1_10:75531037-75531319:+|nuORF	REV__ENST00000465076.5_1_10:75531037-75531319:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2601623535156	2	490.259051	978.503549	0.0031706	1.5544E-06	-1.6739	-0.00082063	-1.6707	-0.00081908	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	1.0239	1	13386	13386		33.516	0.70317	1	6674100	+		8154	32994	5321	5336	9719	9719					0.013437401944315752
DPHVASLVFI	10	Unmodified	_DPHVASLVFI_					0	0	0			REV__ENST00000489881.5_1_3:15455665-15457401:-|nuORF	REV__ENST00000489881.5_1_3:15455665-15457401:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3030395507812	2	549.303124	1096.5917	-0.55003	-0.00030213	0.069523	3.8189E-05	-0.48051	-0.00026394	549.3031405933436	78.762	1.7147	78.762	78.363	80.078	0					126	40	6	0	0	0	0.941	1	9740	9740		51.335	3.4199	1	13542000	+		8155	28712	5322	5337	9720	9720					0.04726315994366814
DPHVASLVFI	10	Unmodified	_DPHVASLVFI_					0	0	0			REV__ENST00000489881.5_1_3:15455665-15457401:-|nuORF	REV__ENST00000489881.5_1_3:15455665-15457401:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3026123046875	2	549.303124	1096.5917	-0.59819	-0.00032859	0.15788	8.6727E-05	-0.44031	-0.00024186	549.3031841848409	78.78	1.6602	78.798	78.441	80.101	0.018677					119	39	6	0	0	0	0.85955	1	9706	9706		56.721	12.604	1	13961000	+		8156	28712	5322	5337	9721	9721					0.04726315994366814
DPHVKTNL	8	Unmodified	_DPHVKTNL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480835.1_1_2:96943505-96944085:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2509460449219	2	462.250892	922.48723	-0.76959	-0.00035574	0.17134	7.9202E-05	-0.59825	-0.00027654	462.25086787587975	30.319	1.0904	30.141	29.782	30.872	-0.17817					65	25	4	0	0	0	0.76379	2	1931	1917;1931		62.107	16.155	1	4652100			8157	5711	5323	5338	9722;9723	9723					0.022886142376592034
DPHVKTNL	8	Unmodified	_DPHVKTNL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480835.1_1_2:96943505-96944085:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2510070800781	2	462.250892	922.48723	-0.10913	-5.0445E-05	-0.43817	-0.00020254	-0.5473	-0.00025299	462.25055457817837	30.351	1.0963	30.201	29.835	30.931	-0.14952					67	25	4	0	0	0	0.83003	1	1896	1896		56.721	3.3696	1	4626400			8158	5711	5323	5338	9724	9724					0.022886142376592034
DPHVLLAVAK	10	Unmodified	_DPHVLLAVAK_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8167724609375	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.0393	1	10848	10848		40.778	1.972	1	4853400			8159	2288	5324	5339	9725	9725					0.09498308748334239
DPIDEPSLSLD	11	Unmodified	_DPIDEPSLSLD_					0	0	0		ENSG00000101115|ENST00000217086|SALL4	ENSG00000101115|ENST00000217086|SALL4	ENSG00000101115|ENST00000217086|SALL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	601.2465209960938	2	600.785158	1199.55576	0.32589	0.00019579	-0.19742	-0.00011861	0.12847	7.718E-05	601.2869421120349	50.537	1.2421	50.356	49.901	51.143	-0.18071					47	32	2	0	0	0	0.02475	1	5077	5077		51.193	11.94	1	158470			8160	2282	5325	5340	9726	9726					-0.03603230763792453
DPIDPPKLE	9	Unmodified	_DPIDPPKLE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.270751953125	2	512.27149	1022.52843	0.53902	0.00027612	-1.7123	-0.00087719	-1.1733	-0.00060106	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	0.75397	1	13263	13263		42.396	3.1433	1	5030900	+		8161	25017	5326	5341	9727	9727					0.018063304864767815
DPIDSFELLDL	11	Unmodified	_DPIDSFELLDL_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3;nc|ENSG00000060566|Q68CJ9-5|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.578369140625	3	426.215093	1275.62345	-0.4117	-0.00017547	-2.1175	-0.00090249	-2.5292	-0.001078	426.2139227771026	36.025	0.44689	35.82	35.506	35.953	-0.20518					19	12	2	0	0	0	0.024746	1	2802	2802		26.75	10.743	1	327310			8162	1234	5327	5342	9728	9728					-0.003337808329888503
DPIKNGCLRG	10	Unmodified	_DPIKNGCLRG_					0	0	0			REV__ENSG00000038295|ENST00000061240|TLL1	REV__ENSG00000038295|ENST00000061240|TLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.7799682617188	2	536.782033	1071.54951	-0.55359	-0.00029716	-1.7756	-0.00095311	-2.3292	-0.0012503	536.7811442635762	17.031	0.24961	16.823	16.662	16.912	-0.20777					6	4	2	0	0	0	1.1162	1	125	125		19.104	1.7386	1	30290	+		8163	20076	5328	5343	9729	9729					0.01660017314338802
DPIKNGCLRG	10	Unmodified	_DPIKNGCLRG_					0	0	0			REV__ENSG00000038295|ENST00000061240|TLL1	REV__ENSG00000038295|ENST00000061240|TLL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.782033	1071.54951	1.2112	0.00065015	-3.2378	-0.001738	-2.0266	-0.0010878	536.7804453979394	17.036	0.25115	16.882	16.756	17.007	-0.15403	0.029398	-0.0013821	NaN	19.104	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28566	+		8164	20076	5328	5343							0.01660017314338802
DPIKNGCLRG	10	Unmodified	_DPIKNGCLRG_					0	0	0			REV__ENSG00000038295|ENST00000061240|TLL1	REV__ENSG00000038295|ENST00000061240|TLL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	536.782033	1071.54951	-0.55359	-0.00029716	-1.7756	-0.00095311	-2.3292	-0.0012503	536.7811442635762	17.031	0.24961	16.823	16.662	16.912	-0.20777	-0.029398	0.00018769	NaN	19.104	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30290	+		8165	20076	5328	5343							0.01660017314338802
DPILPPSLQ	9	Unmodified	_DPILPPSLQ_					0	0	0		ENSG00000146242|ENST00000369750|TPBG	ENSG00000146242|ENST00000369750|TPBG	ENSG00000146242|ENST00000369750|TPBG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.33685302734375	2	490.276575	978.538597	0.26161	0.00012826	-0.098152	-4.8122E-05	0.16346	8.0139E-05	490.2763582706394	76.587	0.88044	76.335	76.023	76.903	-0.25162					44	20	3	0	0	0	0.024021	1	9081	9081		68.787	29.765	1	762230			8166	5867	5329	5344	9730	9730					0.04846938211710494
DPIRCVPL	8	Unmodified	_DPIRCVPL_					0	0	0			REV__ENST00000449500.1_1_20:62259545-62259701:+|nuORF	REV__ENST00000449500.1_1_20:62259545-62259701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2955322265625	2	456.752213	911.489873	-0.52635	-0.00024041	0.82314	0.00037597	0.29679	0.00013556	456.75232583070994	55.82	0.35457	55.918	55.782	56.136	0.097897					15	9	2	0	0	0	0.027866	1	6113	6113		31.955	0	1	89613	+		8167	31986	5330	5345	9731	9731					0.030587463709707663
DPIYPVCICP	10	Unmodified	_DPIYPVCICP_					0	0	0		CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1;nc|ENSG00000134376|P82279-5|CRB1;ENST00000475659.1_1_1:197237491-197326220:+|nuORF	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.322998046875	2	560.264296	1118.51404	-0.10015	-5.6112E-05	0.47378	0.00026544	0.37362	0.00020933	560.2648373187022	68.093	0.22903	67.805	67.632	67.861	-0.28835					9	5	2	0	0	0	0.03519	1	8099	8099		21.96	1.9631	1	156890			8168	584	5331	5346	9732	9732					-0.040477812576909855
DPIYSKLLN	9	Unmodified	_DPIYSKLLN_					0	0	0			REV__ENST00000374423.7_1_2:207169553-207169727:+|nuORF	REV__ENST00000374423.7_1_2:207169553-207169727:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8173217773438	2	531.795132	1061.57571	0.17645	9.3836E-05	0.0038339	2.0388E-06	0.18029	9.5875E-05	531.795112335603	88.606	1.3187	88.622	88.193	89.511	0.015907					62	30	3	0	0	0	0.024374	1	11046	11046		32.812	0	1	511420	+		8169	31294	5332	5347	9733	9733					0.04738609757487211
DPKGKNQNL	9	Unmodified	_DPKGKNQNL_					0	0	0			REV__ENSG00000134046|ENST00000256429|MBD2	REV__ENSG00000134046|ENST00000256429|MBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.274169921875	2	507.272355	1012.53016	-0.34359	-0.00017429	3.9369	0.0019971	3.5933	0.0018228	507.27420160272965	67.361	0.96463	67.073	66.707	67.671	-0.28834					68	23	4	0	0	0	0.48817	1	8018	8018		60.118	7.1816	1	2942400	+		8170	23414	5333	5348	9734	9734					0.02439384295075797
DPKIQEDNL	9	Unmodified	_DPKIQEDNL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2694702148438	2	536.269478	1070.5244	-1.017	-0.00054541	1.8377	0.00098551	0.82067	0.0004401	536.2703397768122	29.483	0.83671	29.486	29.24	30.076	0.0031376					52	20	3	0	0	0	0.32811	1	1810	1810		71.877	8.3436	1	1057400	+		8171	25017;36804	5334	5349	9735	9735					-0.008037590072490275
DPKIQEDNL	9	Unmodified	_DPKIQEDNL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	536.269478	1070.5244	-1.017	-0.00054541	1.8377	0.00098551	0.82067	0.0004401	536.2703397768122	29.483	0.83671	29.486	29.24	30.076	0.0031376	0.063188	-0.00027779	NaN	71.877	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057400	+		8172	25017;36804	5334	5349							-0.008037590072490275
DPKLILQAVTL	11	Unmodified	_DPKLILQAVTL_					0	0	0		ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112;nc|ENSG00000000460|Q9NSG2-3|FIRRM	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8720703125	2	605.873914	1209.73327	-0.09991	-6.0533E-05	-2.8522	-0.0017281	-2.9521	-0.0017886	605.8719802701046	98.576	1.0775	98.586	98.19	99.268	0.010231					67	24	4	0	0	0	1.0557	1	12595	12595		23.523	0.94304	1	1246300			8173	714	5335	5350	9736	9736					0.13679689296827746
DPKTFYDL	8	Unmodified	_DPKTFYDL_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2;REV__ENSG00000146216|ENST00000259750|TTBK1	REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.80047607421875	2	499.745108	997.475663	-0.57139	-0.00028555	0.52358	0.00026166	-0.047806	-2.3891E-05	499.7453904630167	28.675	0.66421	28.671	28.458	29.122	-0.0042					21	15	2	0	0	0	0.027866	1	1681	1681		44.117	1.7207	1	238460	+		8174	23014;24469	5336	5351	9737	9737					-0.023176275763375997
DPKTRRLL	8	Unmodified	_DPKTRRLL_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.83197021484375	2	499.808908	997.603263	-0.24613	-0.00012302	-1.2781	-0.00063881	-1.5242	-0.00076183	499.80898978676834	44.407	0.78061	44.444	44.142	44.923	0.0369					39	16	4	0	0	0	0.027866	1	4189	4189		60.972	16.855	1	482180	+		8175	28441	5337	5352	9738	9738					0.10436557808372982
DPKVCLVSEY	10	Unmodified	_DPKVCLVSEY_					0	0	0			REV__nc|ENSG00000089818|Q8NC96-2|NECAP1	REV__nc|ENSG00000089818|Q8NC96-2|NECAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7828369140625	2	576.783907	1151.55326	-1.2871	-0.00074239	-1.5693	-0.00090512	-2.8564	-0.0016475	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	1.0616	1	7590	7590		37.812	8.662	1	1856800	+		8176	20861	5338	5353	9739	9739					-0.01645357702432193
DPLCMTMTLPA	11	Unmodified	_DPLCMTMTLPA_					0	0	0			REV__ENSG00000101346|ENST00000375749|POFUT1	REV__ENSG00000101346|ENST00000375749|POFUT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.80078125	2	596.77417	1191.53379	-0.25888	-0.00015449	-0.020654	-1.2326E-05	-0.27954	-0.00016682	596.774107710481	78.433	0.81534	78.277	78	78.815	-0.15591					51	18	4	0	0	0	0.024732	1	9416	9416		19.104	7.5925	1	517600	+		8177	21221	5339	5354	9740	9740					-0.05431773309192067
DPLEVHLL	8	Unmodified	_DPLEVHLL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.30438232421875	2	468.263468	934.512382	-0.25695	-0.00012032	-1.1214	-0.00052512	-1.3784	-0.00064544	468.263257151937	62.223	0.24481	61.996	61.839	62.084	-0.22663					9	6	2	0	0	0	0.027866	1	7216	7216		33.516	0	1	105380			8178	8454	5340	5355	9741	9741					0.04250669040231969
DPLEVHLLD	9	Unmodified	_DPLEVHLLD_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3023681640625	2	525.776939	1049.53933	0.45901	0.00024134	-0.58399	-0.00030705	-0.12498	-6.5713E-05	525.7765014851309	72.51	0.47424	72.229	71.991	72.465	-0.28124					21	11	2	0	0	0	0.024506	1	8794	8794		16.473	0	1	212710			8179	8454	5341	5356	9742	9742					0.016537328607682866
DPLHISNL	8	Unmodified	_DPLHISNL_					0	0	0			REV__ZFHX3|p.T30I|1|0.22|ENSG00000140836|chr16:72960057-72960057|G/A|missense_variant	REV__ZFHX3|p.T30I|1|0.22|ENSG00000140836|chr16:72960057-72960057|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7447204589844	2	454.745442	907.476331	0.059719	2.7157E-05	-1.482	-0.00067391	-1.4222	-0.00064675	454.744685532615	101.18	1.8063	101.19	100.7	102.5	0.0090332					106	41	5	0	0	0	0.99042	1	12901	12901		38.806	1.647	1	4694600	+		8180	37795	5342	5357	9743	9743					0.01889211863363016
DPLKKHTL	8	Unmodified	_DPLKKHTL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2849426269531	2	476.284734	950.554916	-0.20143	-9.5936E-05	0.3677	0.00017513	0.16627	7.9193E-05	476.28473227087136	25.238	0.81147	25.011	24.623	25.434	-0.22683					41	18	4	0	0	0	0.74904	1	1183	1183		63.306	5.495	1	760210			8181	1604	5343	5358	9744	9744					0.07766064168481535
DPLKKHTL	8	Unmodified	_DPLKKHTL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.284912109375	2	476.284734	950.554916	-0.1653	-7.873E-05	0.34159	0.00016269	0.17629	8.3963E-05	476.2846922668263	24.961	0.52468	24.786	24.511	25.035	-0.17484					40	11	5	0	0	0	0.42327	1	1126	1126		94.006	22.711	1	726280			8182	1604	5343	5358	9745	9745					0.07766064168481535
DPLKKHTL	8	Unmodified	_DPLKKHTL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.284734	950.554916	1.1984	0.00057077	-1.1577	-0.00055141	0.040647	1.936E-05	476.2839437355314	25.02	0.60086	24.848	24.599	25.2	-0.17151	-0.033642	-0.001078	NaN	94.006	40	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673650			8183	1604	5343	5358							0.07766064168481535
DPLKKLLEVVE	11	Unmodified	_DPLKKLLEVVE_					0	0	0			REV__nc|ENSG00000116062|P52701-4|MSH6	REV__nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8822021484375	2	641.884478	1281.7544	-0.57436	-0.00036868	-2.744	-0.0017613	-3.3184	-0.00213	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0075	1	11689	11689		35.152	5.982	1	1351900	+		8184	22255	5344	5359	9746	9746					0.12479654605704127
DPLLHDTPV	9	Unmodified	_DPLLHDTPV_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|2|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|12	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|2|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.3036193847656	2	503.763832	1005.51311	0.27875	0.00014042	-2.3483	-0.001183	-2.0696	-0.0010426	503.7624077417863	23.446	0.60015	23.244	22.967	23.567	-0.20193					23	13	2	0	0	0	0.024381	1	956	956		45.952	16.11	1	275910	+		8185	19462	5345	5360	9747	9747					0.010574636892670242
DPLLPVGL	8	Unmodified	_DPLLPVGL_					0	0	0		ENST00000378536.4_1_1:2240916-2241354:+|nuORF	ENST00000378536.4_1_1:2240916-2241354:+|nuORF	ENST00000378536.4_1_1:2240916-2241354:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.8872985839844	2	412.249829	822.485105	-0.065462	-2.6987E-05	-3.1619	-0.0013035	-3.2274	-0.0013305	412.24850936054526	27.732	0.61838	27.575	27.185	27.804	-0.15664					19	14	3	0	0	0	0.027866	1	1507	1507		15.636	0	1	159590			8186	13240	5346	5361	9748	9748					0.06676185499861731
DPLPEWLLHS	10	Unmodified	_DPLPEWLLHS_					0	0	0		ENST00000567273.1_1_X:37765640-37765808:+|nuORF	ENST00000567273.1_1_X:37765640-37765808:+|nuORF	ENST00000567273.1_1_X:37765640-37765808:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.22198486328125	3	402.876634	1205.60807	1.7578	0.00070819	-2.3794	-0.0009586	-0.62154	-0.0002504	402.8758716808539	24.341	0.39131	24.16	23.938	24.329	-0.18089					14	8	2	0	0	0	0.03519	1	1044	1044		20.837	0	1	106190			8187	16959	5347	5362	9749	9749					0.013493971604930266
DPLPQPEPQ	9	Unmodified	_DPLPQPEPQ_					0	0	0			REV__ENSG00000147100|ENST00000587091|SLC16A2	REV__ENSG00000147100|ENST00000587091|SLC16A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7948913574219	2	510.753464	1019.49238	-0.82622	-0.00042199	3.5374	0.0018067	2.7112	0.0013847	511.25690648435653	37.762	1.9746	37.544	36.516	38.491	-0.21848					89	52	3	0	0	0	0.024447	1	3066	3066		32.812	0	1	376250	+		8188	24527	5348	5363	9750	9750					-0.016591266903787982
DPLQLFLL	8	Unmodified	_DPLQLFLL_					0	0	0			REV__ENSG00000168495|ENST00000306433|POLR3D	REV__ENSG00000168495|ENST00000306433|POLR3D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7691955566406	2	479.784036	957.553519	0.16438	7.8868E-05	-3.7782	-0.0018127	-3.6138	-0.0017339	479.7817259667728	41.246	0.76096	41.11	40.83	41.591	-0.13554					30	19	2	0	0	0	0.027866	1	3589	3589		20.482	0	1	230460	+		8189	26265	5349	5364	9751	9751					0.07304430079705071
DPLQTLYF	8	Unmodified	_DPLQTLYF_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.3247375488281	2	498.755475	995.496398	0.90622	0.00045198	-4.37	-0.0021795	-3.4637	-0.0017276	498.7530993397305	63.487	0.79337	63.487	63.161	63.954	0					48	21	3	0	0	0	0.027866	1	7442	7442		58.782	8.7574	1	871690	+		8190	24542	5350	5365	9752	9752					-0.001530371966509847
DPLTKRSR	8	Unmodified	_DPLTKRSR_					0	0	0		ENSG00000135097|ENST00000257552|MSI1	ENSG00000135097|ENST00000257552|MSI1	ENSG00000135097|ENST00000257552|MSI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2623596191406	2	486.78289	971.551228	-0.57244	-0.00027865	0.22234	0.00010823	-0.3501	-0.00017042	486.7825871173166	24.2	1.0898	24.2	23.607	24.697	0					37	24	3	0	0	0	0.027866	1	1058	1058		15.642	0	1	87549			8191	4860	5351	5366	9753	9753					0.06431394394610379
DPLVENVQI	9	Unmodified	_DPLVENVQI_					0	0	0			REV__ENSG00000166707|ENST00000650639|ZCCHC18	REV__ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7764892578125	2	513.776939	1025.53933	-0.61749	-0.00031725	1.1616	0.00059681	0.54412	0.00027956	513.7772310336056	102.5	0.47264	102.5	102.26	102.73	0					31	10	4	0	0	0	0.19099	1	13126	13126		90.37	16.115	1	678310	+		8192	26046	5352	5367	9754	9754					0.027577328607549134
DPLVENVQI	9	Unmodified	_DPLVENVQI_					0	0	0			REV__ENSG00000166707|ENST00000650639|ZCCHC18	REV__ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.77734375	2	513.776939	1025.53933	-0.12485	-6.4143E-05	-0.68632	-0.00035261	-0.81117	-0.00041676	513.7755134328837	102.48	0.86111	102.49	102.11	102.97	0.0073471					45	20	4	0	0	0	0.28753	1	13085	13085		77.318	13.11	1	538080	+		8193	26046	5352	5367	9755	9755					0.027577328607549134
DPLVENVQI	9	Unmodified	_DPLVENVQI_					0	0	0			REV__ENSG00000166707|ENST00000650639|ZCCHC18	REV__ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7770385742188	2	513.776939	1025.53933	-0.16517	-8.4861E-05	0.67688	0.00034777	0.51171	0.00026291	513.7771259792884	102.56	0.51688	102.55	102.24	102.76	-0.0046005					27	11	3	0	0	0	0.067814	1	13056	13056		122.18	45.402	1	617840	+		8194	26046	5352	5367	9756	9756					0.027577328607549134
DPLVENVQI	9	Unmodified	_DPLVENVQI_					0	0	0			REV__ENSG00000166707|ENST00000650639|ZCCHC18	REV__ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.7767333984375	2	513.776939	1025.53933	0.28318	0.00014549	-0.68202	-0.00035041	-0.39885	-0.00020492	513.7764310797861	102.69	0.31248	102.56	102.31	102.62	-0.12931					16	6	3	0	0	0	0.72494	1	12744	12744		44.377	1.981	1	395730	+		8195	26046	5352	5367	9757	9757					0.027577328607549134
DPLVENVQI	9	Unmodified	_DPLVENVQI_					0	0	0			REV__ENSG00000166707|ENST00000650639|ZCCHC18	REV__ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.7753295898438	2	513.776939	1025.53933	0.28318	0.00014549	-0.68202	-0.00035041	-0.39885	-0.00020492	513.7764310797861	102.69	0.31248	102.56	102.31	102.62	-0.12931					16	6	3	0	0	0	0.024367	1	12756	12756		44.377	18.927	1	395730	+		8196	26046	5352	5367	9758	9758					0.027577328607549134
DPLVENVQI	9	Unmodified	_DPLVENVQI_					0	0	0			REV__ENSG00000166707|ENST00000650639|ZCCHC18	REV__ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	513.776939	1025.53933	-0.61749	-0.00031725	1.1616	0.00059681	0.54412	0.00027956	513.7772310336056	102.5	0.47264	102.5	102.26	102.73	0	-0.035156	0.00085801	NaN	122.18	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678310	+		8197	26046	5352	5367							0.027577328607549134
DPLVENVQI	9	Unmodified	_DPLVENVQI_					0	0	0			REV__ENSG00000166707|ENST00000650639|ZCCHC18	REV__ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	513.776939	1025.53933	-0.16517	-8.4861E-05	0.67688	0.00034777	0.51171	0.00026291	513.7771259792884	102.56	0.51688	102.55	102.24	102.76	-0.0046005	0.021071	0.00035992	NaN	122.18	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617840	+		8198	26046	5352	5367							0.027577328607549134
DPLVPLPTF	9	Unmodified	_DPLVPLPTF_					0	0	0			REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3190002441406	2	499.781493	997.548434	1.0872	0.00054334	0.53042	0.0002651	1.6176	0.00080843	499.7805866697955	97.007	1.2405	97.007	96.397	97.637	-3.8147E-05					37	27	2	0	0	0	0.024294	1	12258	12258		45.952	0	1	59953	+		8199	34888	5353	5368	9759	9759					0.049561262170982445
DPLVRRSA	8	Unmodified	_DPLVRRSA_					0	0	0		ENST00000526183.5_1_8:145703364-145715441:+|nuORF	ENST00000526183.5_1_8:145703364-145715441:+|nuORF	ENST00000526183.5_1_8:145703364-145715441:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26409912109375	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.89627	1	10104	10104		51.335	1.8939	1	2920900			8200	16116	5354	5369	9760	9760					0.05435722848858404
DPLYKEAL	8	Unmodified	_DPLYKEAL_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000128383|P31941-2|APOBEC3A;ENSG00000128383|ENST00000249116|APOBEC3A	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.7553405761719	2	474.755475	947.496398	-0.12064	-5.7276E-05	0.95669	0.0004542	0.83605	0.00039692	474.75600182893294	54.52	1.0303	54.373	53.769	54.8	-0.14609					55	29	3	0	0	0	0.32162	1	5803	5803		108.09	5.3142	1	2225600			8201	8918	5355	5370	9761	9761					0.02054962803322269
DPLYKEAL	8	Unmodified	_DPLYKEAL_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000128383|P31941-2|APOBEC3A;ENSG00000128383|ENST00000249116|APOBEC3A	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.7555236816406	2	474.755475	947.496398	0.010796	5.1255E-06	-0.059357	-2.818E-05	-0.048561	-2.3055E-05	474.7552859600198	54.687	0.60785	54.456	54.213	54.821	-0.23087					40	16	3	0	0	0	0.4075	1	5815	5815		96.19	5.4138	1	2123500			8202	8918	5355	5370	9762	9762					0.02054962803322269
DPLYKEAL	8	Unmodified	_DPLYKEAL_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000128383|P31941-2|APOBEC3A;ENSG00000128383|ENST00000249116|APOBEC3A	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	474.755475	947.496398	0.77263	0.00036681	-0.69324	-0.00032912	0.079396	3.7694E-05	474.7549621228199	54.606	0.67202	54.4	54.122	54.794	-0.20613	-0.0097787	-0.0004064	NaN	108.09	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2221900			8203	8918	5355	5370							0.02054962803322269
DPMKARVVL	9	Unmodified	_DPMKARVVL_					0	0	0		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7998657226562	2	514.799694	1027.58484	-0.54969	-0.00028298	0.075233	3.873E-05	-0.47445	-0.00024425	514.7996695574594	45.302	1.4969	45.203	44.868	46.365	-0.099445					97	41	5	0	0	0	0.12602	1	4282	4282		104.75	10.74	1	15757000			8204	5682	5356	5371	9763	9763					0.07214679842149962
DPMKARVVL	9	Unmodified	_DPMKARVVL_					0	0	0		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.7994384765625	2	514.799694	1027.58484	-0.054432	-2.8021E-05	-0.56239	-0.00028952	-0.61682	-0.00031754	514.799356717267	45.461	1.1885	45.208	44.826	46.015	-0.25252					91	32	5	0	0	0	0.12602	1	4299	4299		104.75	17.812	1	17317000			8205	5682	5356	5371	9764	9764					0.07214679842149962
DPMKARVVL	9	Unmodified	_DPMKARVVL_					0	0	0		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.80029296875	2	514.799694	1027.58484	-0.45759	-0.00023557	0.058667	3.0202E-05	-0.39892	-0.00020536	514.7996735856224	45.41	1.2015	45.199	44.871	46.072	-0.21109					85	33	4	0	0	0	0.2508	2	4282	4282;4294		82.241	19.262	1	16377000			8206	5682	5356	5371	9765;9766	9765					0.07214679842149962
DPNKQANLVC	10	Unmodified	_DPNKQANLVC_					0	0	0			REV__ENST00000544246.5_1_13:67804114-67804252:-|nuORF	REV__ENST00000544246.5_1_13:67804114-67804252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.2694702148438	2	551.271498	1100.52844	-0.48661	-0.00026825	-2.7955	-0.0015411	-3.2821	-0.0018093	551.2698734745812	22.96	0.5995	22.775	22.507	23.107	-0.18539					32	12	4	0	0	0	1.0719	1	865	865		36.447	2.2742	1	306740	+		8207	34809	5357	5372	9767	9767					-0.01779992785191098
DPNNKEFEG	9	Unmodified	_DPNNKEFEG_					0	0	0			REV__ENSG00000147687|ENST00000276692|TATDN1	REV__ENSG00000147687|ENST00000276692|TATDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.28515625	2	525.230353	1048.44615	-0.35714	-0.00018758	-0.23816	-0.00012509	-0.59529	-0.00031267	525.2307991231502	66.505	0.33582	66.259	66.05	66.386	-0.24517					13	8	2	0	0	0	0.024418	1	7591	7591		30.318	0	1	96561	+		8208	24577	5358	5373	9768	9768					-0.07613191592463409
DPNRQLWIEL	10	Unmodified	_DPNRQLWIEL_					0	0	0		ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2559509277344	3	428.562938	1282.66699	-1.0103	-0.00043297	4.2635	0.0018272	3.2533	0.0013942	428.56474979243063	44.495	0.27457	44.495	44.417	44.691	0					10	7	2	0	0	0	0.03519	1	4255	4255		18.531	7.9443	1	69519			8209	10953	5359	5374	9769	9769					0.036958734547852146
DPNTKITDI	9	Unmodified	_DPNTKITDI_					0	0	0			REV__ENST00000581920.1_1_18:667730-672994:+|nuORF	REV__ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7694396972656	2	508.766571	1015.51859	-0.98741	-0.00050236	0.74538	0.00037923	-0.24203	-0.00012313	508.7671287500867	22.556	1.5159	22.63	22.172	23.688	0.073954					80	33	3	0	0	0	0.17822	1	791	791		93.195	10.445	1	5476900	+		8210	27054	5360	5375	9770	9770					0.011451424810957178
DPNYGIKNI	9	Unmodified	_DPNYGIKNI_					0	0	0			REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8192138671875	2	517.269281	1032.52401	-0.13265	-6.8615E-05	2.9525	0.0015272	2.8199	0.0014586	517.2702172746727	92.083	0.96726	91.961	91.414	92.382	-0.12241					38	22	3	0	0	0	0.024397	1	11280	11280		31.53	3.6476	1	238670	+		8211	32096	5361	5376	9771	9771					0.00904866063569898
DPNYGIKNI	9	Unmodified	_DPNYGIKNI_					0	0	0			REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	REV__ENST00000417549.1_1_13:28788954-28789521:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.8190307617188	2	517.269281	1032.52401	0.21561	0.00011153	2.8638	0.0014814	3.0795	0.0015929	517.2705321143287	92.198	0.62351	92.057	91.748	92.371	-0.14131					27	14	2	0	0	0	0.024319	1	11265	11265		31.53	0	1	238670	+		8212	32096	5361	5376	9772	9772					0.00904866063569898
DPNYLKGVSL	10	Unmodified	_DPNYLKGVSL_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.3323364257812	2	553.298039	1104.58152	-0.76729	-0.00042454	3.9378	0.0021788	3.1705	0.0017543	553.2999351119544	94.339	1.6283	94.202	93.79	95.418	-0.13779					70	37	4	0	0	0	0.03519	1	11773	11773		41.08	3.2685	1	562440	+		8213	25610	5362	5377	9773	9773					0.033417082691585165
DPPCFCGE	8	Unmodified	_DPPCFCGE_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2552490234375	2	434.154214	866.293875	0.45058	0.00019562	-1.4628	-0.00063507	-1.0122	-0.00043945	434.15488003689234	102.89	0.35858	102.77	102.58	102.94	-0.12724					9	8	2	0	0	0	0.027866	1	12765	12765		19.36	1.0356	1	150480	+		8214	21876	5363	5378	9774	9774					-0.14462006865244348
DPPLKFMSV	9	Unmodified	_DPPLKFMSV_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2733154296875	2	517.272978	1032.5314	-0.0040077	-2.0731E-06	0.10552	5.4582E-05	0.10151	5.2509E-05	517.272845562665	71.171	0.86215	70.899	70.614	71.476	-0.27185					39	19	3	0	0	0	0.20652	3	8306	8284;8294;8306		88.177	15.909	1	3557500			8215	7978	5364	5379	9775;9776;9777	9777					0.016438823396356383
DPPLKFMSV	9	Unmodified	_DPPLKFMSV_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2732543945312	2	517.272978	1032.5314	0.094766	4.902E-05	0.13085	6.7685E-05	0.22562	0.0001167	517.272903272568	71.11	0.88255	70.853	70.564	71.446	-0.25713					50	20	3	0	0	0	0.079716	3	8303	8291;8303;8316		117.81	43.72	1	4347700			8216	7978	5364	5379	9778;9779;9780	9779					0.016438823396356383
DPPLKFMSV	9	Unmodified	_DPPLKFMSV_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2730712890625	2	517.272978	1032.5314	0.67172	0.00034746	-0.4018	-0.00020784	0.26992	0.00013962	517.2725746100771	71.015	1.1293	70.8	70.52	71.65	-0.21424					57	26	3	0	0	0	0.11727	2	8277	8260;8277		106.68	32.849	1	4508600			8217	7978	5364	5379	9781;9782	9782					0.016438823396356383
DPPLLYKD	8	Unmodified	_DPPLLYKD_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2766418457031	2	480.755475	959.496398	-0.10789	-5.1868E-05	-3.996	-0.0019211	-4.1039	-0.001973	480.75336956049443	48.12	0.62361	48.023	47.667	48.291	-0.097553					39	16	3	0	0	0	0.027866	1	4793	4793		38.806	18.324	1	1462800	+		8218	27537	5365	5380	9783	9783					0.015029628033175868
DPPPLPIRA	9	Unmodified	_DPPPLPIRA_					0	0	0		ENST00000596232.1_1_19:36036641-36037015:+|nuORF	ENST00000596232.1_1_19:36036641-36037015:+|nuORF	ENST00000596232.1_1_19:36036641-36037015:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.76837158203125	2	488.284734	974.554916	-0.5533	-0.00027017	3.174	0.0015498	2.6207	0.0012797	488.2862113909007	37.615	0.42156	37.615	37.414	37.836	0					17	11	2	0	0	0	0.024427	1	3073	3073		42.396	26.754	1	917990			8219	17431	5366	5381	9784	9784					0.06662064168460802
DPPPLPIRA	9	Unmodified	_DPPPLPIRA_					0	0	0		ENST00000596232.1_1_19:36036641-36037015:+|nuORF	ENST00000596232.1_1_19:36036641-36037015:+|nuORF	ENST00000596232.1_1_19:36036641-36037015:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7677917480469	2	488.284734	974.554916	-0.8006	-0.00039092	3.4778	0.0016982	2.6772	0.0013073	488.2864781674104	37.644	0.47333	37.676	37.45	37.923	0.032269					20	12	2	0	0	0	0.024427	1	3031	3031		51.335	28.293	1	702680			8220	17431	5366	5381	9785	9785					0.06662064168460802
DPPPPEEM	8	Unmodified	_DPPPPEEM_					0	0	0			REV__ENSG00000127586|ENST00000262315|CHTF18	REV__ENSG00000127586|ENST00000262315|CHTF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2583923339844	2	456.194393	910.374234	-0.39011	-0.00017797	2.856	0.0013029	2.4659	0.0011249	456.1953139122977	32.59	0.25515	32.601	32.488	32.743	0.011799					9	6	2	0	0	0	0.027866	1	2275	2275		73.975	40.482	1	37519	+		8221	22941	5367	5382	9786	9786					-0.08453822270541878
DPPPPPPPV	9	Unmodified	_DPPPPPPPV_					0	0	0			REV__ENSG00000129038|ENST00000261921|LOXL1	REV__ENSG00000129038|ENST00000261921|LOXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.25848388671875	2	456.744911	911.475269	-0.10611	-4.8463E-05	-3.3524	-0.0015312	-3.4586	-0.0015797	456.7434004919666	31.771	0.52477	31.84	31.606	32.131	0.068962					25	12	3	0	0	0	0.024	1	2141	2141		65.803	15.779	1	195620	+		8222	23028	5368	5383	9787	9787					0.015989974944773166
DPPPPPPPV	9	Unmodified	_DPPPPPPPV_					0	0	0			REV__ENSG00000129038|ENST00000261921|LOXL1	REV__ENSG00000129038|ENST00000261921|LOXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2581481933594	2	456.744911	911.475269	0.71866	0.00032825	-4.0016	-0.0018277	-3.283	-0.0014995	456.7430566746164	33.189	1.2153	33.245	32.838	34.054	0.056568					75	31	3	0	0	0	0.023775	1	2261	2261		57.811	0	1	1078200	+		8223	23028	5368	5383	9788	9788					0.015989974944773166
DPPPRKNTV	9	Unmodified	_DPPPRKNTV_					0	0	0			REV__ABCC2|p.D1287N|1|0.32|ENSG00000023839|chr10:99844337-99844337|G/A|missense_variant	REV__ABCC2|p.D1287N|1|0.32|ENSG00000023839|chr10:99844337-99844337|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.32720947265625	2	512.282723	1022.55089	0.67602	0.00034631	-2.6796	-0.0013727	-2.0036	-0.0010264	512.2794812633924	96.7	1.2859	96.563	96.183	97.468	-0.13671					54	28	4	0	0	0	0.02435	1	11907	11907		26.693	0	1	76912	+		8224	19046	5369	5384	9789	9789					0.040519746747463614
DPPSDMDSEA	10	Unmodified	_DPPSDMDSEA_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant;ENST00000435830.6_1_3:37323589-37329032:+|nuORF	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7688598632812	2	532.197861	1062.38117	-0.637	-0.00033901	0.89616	0.00047694	0.25917	0.00013793	532.1983337846065	40.585	0.65094	40.36	40.004	40.655	-0.225					21	17	2	0	0	0	0.03519	1	3502	3502		54.776	20.604	1	454320			8225	5759	5370	5385	9790	9790					-0.14752554180631705
DPPTELNKT	9	Unmodified	_DPPTELNKT_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2796936035156	2	507.758746	1013.50294	-0.057699	-2.9297E-05	1.2372	0.00062818	1.1795	0.00059889	507.75918278340447	24.368	0.72509	24.153	23.909	24.635	-0.2151					32	16	3	0	0	0	0.024263	1	1046	1046		42.396	12.078	1	1248700	+		8226	23178	5371	5386	9791	9791					-0.00327144035964011
DPPTELNKT	9	Unmodified	_DPPTELNKT_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.759033203125	2	507.758746	1013.50294	-0.27822	-0.00014127	1.8806	0.00095487	1.6023	0.0008136	507.7594727078954	24.204	0.55394	24.029	23.829	24.383	-0.17484					33	12	4	0	0	0	0.6504	1	1026	1026		49.442	11.63	1	1222000	+		8227	23178	5371	5386	9792	9792					-0.00327144035964011
DPPTELNKT	9	Unmodified	_DPPTELNKT_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7595520019531	2	507.758746	1013.50294	1.8368	0.00093265	-0.68871	-0.0003497	1.1481	0.00058296	507.758269010358	24.186	0.57016	24.005	23.759	24.329	-0.18089					36	12	4	0	0	0	0.62163	1	1001	1001		51.335	1.7994	1	1267200	+		8228	23178	5371	5386	9793	9793					-0.00327144035964011
DPQAIYCK	8	Unmodified	_DPQAIYCK_					0	0	0		nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6	nc|ENSG00000198055|P43250-3|GRK6	nc|ENSG00000198055|P43250-3|GRK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.75054931640625	2	469.226028	936.437503	-0.17923	-8.41E-05	-2.1606	-0.0010138	-2.3399	-0.0010979	469.22534614178704	30.611	0.37491	30.62	30.331	30.706	0.0086708					10	8	2	0	0	0	0.027866	1	1929	1929		40.778	28.571	1	29933			8229	10091	5372	5387	9794	9794					-0.03325836762655854
DPQALAMPCL	10	Unmodified	_DPQALAMPCL_					0	0	0		ENST00000527969.1_1_11:65637109-65637745:-|nuORF	ENST00000527969.1_1_11:65637109-65637745:-|nuORF	ENST00000527969.1_1_11:65637109-65637745:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.298583984375	2	529.754095	1057.49364	-1.3962	-0.00073965	4.4866	0.0023768	3.0903	0.0016371	529.7563762398806	31.292	0.71198	31.292	30.797	31.509	0					27	16	2	0	0	0	0.03519	1	2017	2017		26.693	0	1	204910			8230	16169	5373	5388	9795	9795					-0.032809519174861634
DPQAPDPLTL	10	Unmodified	_DPQAPDPLTL_					0	0	0			REV__ENST00000405489.7_2_2:27435435-27436103:+|nuORF	REV__ENST00000405489.7_2_2:27435435-27436103:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7744750976562	2	533.774396	1065.53424	-0.60224	-0.00032146	1.036	0.00055302	0.43381	0.00023155	533.7745829780545	84.276	1.5497	84.276	83.823	85.372	0					98	36	4	0	0	0	0.37509	2	10548	10535;10548		101.25	8.2277	1	2544700	+		8231	31910	5374	5389	9796;9797	9797					0.004094289981367183
DPQAPDPLTL	10	Unmodified	_DPQAPDPLTL_					0	0	0			REV__ENST00000405489.7_2_2:27435435-27436103:+|nuORF	REV__ENST00000405489.7_2_2:27435435-27436103:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7748413085938	2	533.774396	1065.53424	-0.94614	-0.00050503	1.3902	0.00074208	0.4441	0.00023705	533.7747907920686	84.171	2.0904	84.198	83.814	85.905	0.026558					117	49	4	0	0	0	0.31896	2	10442	10442;10452		107.01	10.817	1	2621900	+		8232	31910	5374	5389	9798;9799	9798					0.004094289981367183
DPQEAIAIV	9	Unmodified	_DPQEAIAIV_					0	0	0		nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.77423095703125	2	478.258382	954.502212	0.052005	2.4872E-05	0.32954	0.0001576	0.38154	0.00018247	478.2585732459384	68.852	0.56468	68.867	68.569	69.133	0.015129					23	14	2	0	0	0	0.024436	1	8227	8227		30.504	1.3541	1	318680			8233	10052	5375	5390	9800	9800					0.023140613149848832
DPQHQRRW	8	Unmodified	_DPQHQRRW_					0	0	0			REV__ENSG00000136449|ENST00000323776|MYCBPAP	REV__ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.7339477539062	2	561.781213	1121.54787	0.2618	0.00014707	-2.3351	-0.0013118	-2.0733	-0.0011648	561.7797227708561	79.077	0.67284	78.822	78.514	79.187	-0.25471					19	11	2	0	0	0	0.027866	1	9399	9399		31.955	5.2619	1	167630	+		8234	23657	5376	5391	9801	9801					-0.008038556593874091
DPQHVNDRTF	10	Unmodified	_DPQHVNDRTF_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.9156494140625	3	410.195026	1227.56325	0.13839	5.6768E-05	0.36615	0.00015019	0.50454	0.00020696	410.19535929746587	32.457	1.0427	32.22	31.867	32.91	-0.23666					42	24	3	0	0	0	0.03519	1	2202	2202		32.751	12.72	1	235680			8235	9707	5377	5392	9802	9802					-0.041430336528719636
DPQIPHLVA	9	Unmodified	_DPQIPHLVA_					0	0	0		nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant	nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2745056152344	2	495.274367	988.53418	0.75116	0.00037203	-0.49318	-0.00024426	0.25798	0.00012777	495.27400481572096	72.137	0.69776	72.137	71.795	72.493	0					55	17	4	0	0	0	0.15029	2	8771	8771;8781		99.375	32.946	1	2258500			8236	6402	5378	5393	9803;9804	9803					0.03945473788792242
DPQIPHLVA	9	Unmodified	_DPQIPHLVA_					0	0	0		nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant	nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2747802734375	2	495.274367	988.53418	0.70349	0.00034842	-0.4545	-0.0002251	0.24899	0.00012332	495.274005872249	72.494	0.69901	72.213	71.807	72.506	-0.28124					53	17	4	0	0	0	0.15029	2	8799	8787;8799		99.375	32.946	1	2212400			8237	6402	5378	5393	9805;9806	9806					0.03945473788792242
DPQIPHLVA	9	Unmodified	_DPQIPHLVA_					0	0	0		nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant	nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.27471923828125	2	495.274367	988.53418	0.65266	0.00032325	-0.56564	-0.00028015	0.087022	4.31E-05	495.2739857891853	72.177	0.89085	72.187	71.802	72.693	0.0097733					59	22	4	0	0	0	0.29158	2	8710	8698;8710		76.774	15.435	1	2560800			8238	6402	5378	5393	9807;9808	9808					0.03945473788792242
DPQKRNLD	8	Unmodified	_DPQKRNLD_					0	0	0		ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000152076|Q96LY2|CCDC74B;ENSG00000163040|ENST00000409856|CCDC74A;nc|ENSG00000163040|Q96AQ1|CCDC74A;ENST00000465939.1_1_2:132285543-132287284:+|nuORF;ENST00000478665.1_1_2:132285543-132287284:+|nuORF	ENSG00000152076|ENST00000409943|CCDC74B	ENSG00000152076|ENST00000409943|CCDC74B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7861022949219	2	493.256705	984.498858	0.92147	0.00045452	4.1143	0.0020294	5.0358	0.0024839	493.2584697466277	51.674	0.34016	51.49	51.258	51.598	-0.18405					12	8	2	0	0	0	0.027866	1	5323	5323		26.693	0	1	83645			8239	6246	5379	5394	9809	9809					0.0059881126099980975
DPQNYLMEV	9	Unmodified	_DPQNYLMEV_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.3242797851562	2	554.752607	1107.49066	0.21258	0.00011793	3.8218	0.0021202	4.0344	0.0022381	554.7547678745942	50.706	0.40744	50.594	50.416	50.823	-0.11163					18	10	2	0	0	0	0.024495	1	5144	5144		19.997	0	1	464630	+		8240	28084	5380	5395	9810	9810					-0.05878503770668431
DPQQPTSTV	9	Unmodified	_DPQQPTSTV_					0	0	0		ENSG00000109943|ENST00000227348|CRTAM;nc|ENSG00000109943|O95727-2|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.8135681152344	2	486.735271	971.45599	0.27593	0.00013431	2.3447	0.0011413	2.6206	0.0012756	486.7364036566057	21.59	0.76161	21.413	21.113	21.875	-0.17721					28	15	3	0	0	0	0.024319	1	695	695		56.721	0	1	44693			8241	3006	5381	5396	9811	9811					-0.03088003587095045
DPQRVFNL	8	Unmodified	_DPQRVFNL_					0	0	0		nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7661437988281	2	494.764166	987.513779	-0.17205	-8.5124E-05	3.3922	0.0016783	3.2201	0.0015932	494.7655860749451	40.914	0.68191	40.686	40.439	41.121	-0.2278					47	17	4	0	0	0	0.87148	1	3583	3583		53.351	3.9099	1	1128400			8242	18379;18380	5382	5397	9812	9812					0.019523031289850223
DPQVLFAGY	9	Unmodified	_DPQVLFAGY_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENSG00000005075|ENST00000292614|POLR2J;ENST00000427076.5_1_7:44053248-44058742:-|nuORF;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8219299316406	2	505.2531	1008.49165	0.32249	0.00016294	-4.1629	-0.0021033	-3.8404	-0.0019404	505.2514979868383	42.867	0.32285	42.893	42.754	43.077	0.026012					13	8	2	0	0	0	0.024487	1	3936	3936		17.365	0	1	117120			8243	10673	5383	5398	9813	9813					-0.01225921339425895
DPRGLMSLGHS	11	Unmodified	_DPRGLMSLGHS_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	585.3116455078125	2	585.290222	1168.56589	0.72595	0.00042489	0.85122	0.00049821	1.5772	0.0009231	585.791955236236	50.147	0.12657	50.228	50.117	50.243	0.08099					5	3	2	0	0	0	0.024771	1	5146	5146		42.864	5.7052	1	90983	+		8244	27537	5384	5399	9814	9814					-0.011649015195644097
DPRGRTPL	8	Unmodified	_DPRGRTPL_					0	0	0		ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;ENSG00000172932|ENST00000511455|ANKRD13D;ENST00000514166.5_1_11:67056880-67057734:+|nuORF;ENST00000512101.5_1_11:67056880-67058074:+|nuORF;ANKRD13B|p.T432Sfs*64|1|0.06|ENSG00000198720|chr17:29612426-29612427|-/CGCCCGCATCT|frameshift_variant;ENST00000487527.5_1_17:27916841-27940597:+|nuORF;ENSG00000198720|ENST00000394859|ANKRD13B	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;ANKRD13B|p.T432Sfs*64|1|0.06|ENSG00000198720|chr17:29612426-29612427|-/CGCCCGCATCT|frameshift_variant	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.26898193359375	2	456.256508	910.498464	-0.030859	-1.4079E-05	-3.2988	-0.0015051	-3.3296	-0.0015192	456.25303254821387	45.124	0.4762	45.124	44.934	45.41	0					35	13	4	0	0	0	0.027866	1	4375	4375		71.296	0	1	187130			8245	91;90	5385	5400	9815	9815					0.039634363317986754
DPRIQDVIK	9	Unmodified	_DPRIQDVIK_					0	0	0			REV__nc|ENSG00000100201|Q92841-1|DDX17	REV__nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8104858398438	2	542.31148	1082.60841	-0.95053	-0.00051548	-3.7328	-0.0020243	-4.6833	-0.0025398	542.8111036378995	63.118	0.80206	62.879	62.654	63.457	-0.23926					30	20	2	0	0	0	0.30449	1	7334	7334		75.043	14.925	1	2597900	+		8246	21063	5386	5401	9816	9816					0.07040816880316925
DPRISIPDD	9	Unmodified	_DPRISIPDD_					0	0	0		DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant;ENSG00000064218|ENST00000190165|DMRT3	DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant	DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2962646484375	2	514.256371	1026.49819	0.54384	0.00027967	4.3416	0.0022327	4.8854	0.0025124	514.2578569435766	85.849	0.84143	85.849	85.372	86.214	0					26	19	3	0	0	0	0.024209	1	10734	10734		66.429	18.772	1	62830			8247	646	5387	5402	9817	9817					-0.014000281787275526
DPRISIPDD	9	Unmodified	_DPRISIPDD_					0	0	0		DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant;ENSG00000064218|ENST00000190165|DMRT3	DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant	DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.256371	1026.49819	-0.23964	-0.00012324	3.954	0.0020334	3.7144	0.0019101	514.2584120193807	85.832	0.5007	85.774	85.563	86.064	-0.05761	-0.046825	-0.00055771	NaN	66.429	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59060			8248	646	5387	5402							-0.014000281787275526
DPRISIPDD	9	Unmodified	_DPRISIPDD_					0	0	0		DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant;ENSG00000064218|ENST00000190165|DMRT3	DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant	DMRT3|p.T430M|1|0.4|ENSG00000064218|chr9:990875-990875|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.256371	1026.49819	-1.2838	-0.0006602	4.9564	0.0025489	3.6726	0.0018887	514.2586061263249	85.816	0.45612	85.84	85.616	86.072	0.023666	0.018599	0.00047331	NaN	66.429	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118810			8249	646	5387	5402							-0.014000281787275526
DPRLKTPMY	9	Unmodified	_DPRLKTPMY_					0	0	0		ENSG00000188324|ENST00000358433|OR6C6	ENSG00000188324|ENST00000358433|OR6C6	ENSG00000188324|ENST00000358433|OR6C6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2791137695312	2	560.794609	1119.57467	0.093859	5.2636E-05	3.2116	0.0018011	3.3055	0.0018537	561.2975031016501	85.941	0.21671	85.804	85.702	85.919	-0.13734					5	4	2	0	0	0	0.024427	1	10407	10407		34.173	13.226	1	41455			8250	9710	5388	5403	9818	9818					0.019660721168975215
DPRRGVPEPQ	10	Unmodified	_DPRRGVPEPQ_					0	0	0			REV__ENST00000419593.5_1_20:44038801-44038933:+|nuORF	REV__ENST00000419593.5_1_20:44038801-44038933:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.8368530273438	2	575.801811	1149.58907	-0.79572	-0.00045818	2.1458	0.0012355	1.35	0.00077735	576.3045664559551	51.587	0.20223	51.587	51.431	51.633	0					7	5	2	0	0	0	0.03519	1	5487	5487		19.997	0	1	266790	+		8251	32146	5389	5404	9819	9819					0.020258605894241555
DPRSPVCPH	9	Unmodified	_DPRSPVCPH_					0	0	0			REV__ENSG00000180304|ENST00000326005|OAZ2	REV__ENSG00000180304|ENST00000326005|OAZ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2963562011719	2	504.240001	1006.46545	2.1293	0.0010737	-3.406	-0.0017175	-1.2767	-0.00064378	504.7388537756332	18.553	0.34224	18.553	18.431	18.774	0					9	6	2	0	0	0	0.024405	1	311	311		35.618	0	1	17361	+		8252	27329	5390	5405	9820	9820					-0.03752513782558253
DPRTSYIA	8	Unmodified	_DPRTSYIA_					0	0	0			REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.7345275878906	2	461.735074	921.455596	-0.36915	-0.00017045	-1.3565	-0.00062633	-1.7256	-0.00079678	461.7346477897209	103.79	0.73402	103.66	103.29	104.02	-0.12927					37	17	3	0	0	0	1.043	1	12934	12934		30.504	2.6214	1	153390	+		8253	24631	5391	5406	9821	9821					-0.008273785163055436
DPSAQISPTDS	11	Unmodified	_DPSAQISPTDS_					0	0	0		nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X;FAM199X|p.D385Qfs*7|1|0.07|ENSG00000123575|chrX:104189762-104189763|-/TCAAATCCTTC|frameshift_variant	nc|ENSG00000123575|Q6PEV8-2|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.298828125	2	559.254025	1116.4935	1.0701	0.00059843	2.8889	0.0016156	3.9589	0.002214	559.2564097721264	97.61	0.53087	97.487	97.243	97.774	-0.12368					24	11	3	0	0	0	0.02479	1	12095	12095		45.022	12.21	1	78399			8254	3987	5392	5407	9822	9822					-0.06008957112135249
DPSDFPSVP	9	Unmodified	_DPSDFPSVP_					0	0	0		ENST00000374980.2_1_20:32693350-32700101:-|nuORF	ENST00000374980.2_1_20:32693350-32700101:-|nuORF	ENST00000374980.2_1_20:32693350-32700101:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.74969482421875	2	480.71909	959.423627	-0.2801	-0.00013465	0.90941	0.00043717	0.62931	0.00030252	480.7203767886219	32.846	0.3838	32.846	32.79	33.174	0					12	9	2	0	0	0	0.024294	1	2357	2357		55.504	6.0627	1	45665			8255	13144	5393	5408	9823	9823					-0.057707909900841514
DPSIQNELT	9	Unmodified	_DPSIQNELT_					0	0	0		nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;nc|ENSG00000163531|O94856-2|NFASC	nc|ENSG00000163531|O94856-4|NFASC	nc|ENSG00000163531|O94856-4|NFASC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	508.748379	1015.4822	0.020136	1.0244E-05	-2.4164	-0.0012293	-2.3962	-0.0012191	508.7471439023946	59.823	1.3337	59.623	59.063	60.397	-0.20016					59	35	2	0	0	0	0.024017	1	6762	6762		65.465	17.55	1	558840			8256	7100	5394	5409	9824	9824					-0.024917344156278887
DPSIQNELT	9	Unmodified	_DPSIQNELT_					0	0	0		nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;nc|ENSG00000163531|O94856-2|NFASC	nc|ENSG00000163531|O94856-4|NFASC	nc|ENSG00000163531|O94856-4|NFASC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.748379	1015.4822	1.1892	0.00060498	-2.47	-0.0012566	-1.2809	-0.00065164	508.7472256582882	59.805	0.76366	59.607	59.256	60.02	-0.19742	0.0044955	-7.5206E-05	NaN	65.465	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447430			8257	7100	5394	5409							-0.024917344156278887
DPSIQNELT	9	Unmodified	_DPSIQNELT_					0	0	0		nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;nc|ENSG00000163531|O94856-2|NFASC	nc|ENSG00000163531|O94856-4|NFASC	nc|ENSG00000163531|O94856-4|NFASC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.748379	1015.4822	0.36576	0.00018608	-2.7997	-0.0014243	-2.4339	-0.0012382	508.74691658531407	59.738	0.63711	59.562	59.361	59.998	-0.1761	-0.041212	-0.0004106	NaN	65.465	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436890			8258	7100	5394	5409							-0.024917344156278887
DPSIQNELT	9	Unmodified	_DPSIQNELT_					0	0	0		nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;nc|ENSG00000163531|O94856-2|NFASC	nc|ENSG00000163531|O94856-4|NFASC	nc|ENSG00000163531|O94856-4|NFASC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.748379	1015.4822	-0.191	-9.717E-05	-1.0986	-0.00055892	-1.2896	-0.00065609	508.74794552211887	59.886	0.72017	59.637	59.377	60.097	-0.24841	0.034442	0.0013202	NaN	65.465	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263400			8259	7100	5394	5409							-0.024917344156278887
DPSKKLAASV	10	Unmodified	_DPSKKLAASV_					0	0	0		ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2963562011719	2	508.292756	1014.57096	-0.31943	-0.00016237	4.413	0.0022431	4.0936	0.0020807	508.29309388791825	61.78	0.48565	61.523	61.258	61.744	-0.25725					20	11	3	0	0	0	0.03519	1	6920	6920		90.601	24.172	1	1203100			8260	2197	5395	5410	9825	9825					0.06425725614701605
DPSLIHVEV	9	Unmodified	_DPSLIHVEV_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000488971.1_1_2:86683605-86693535:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A;ENST00000488971.1_1_2:86683605-86693535:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.245849609375	2	504.771657	1007.52876	0.093791	4.7343E-05	-0.27056	-0.00013657	-0.17677	-8.9229E-05	504.77139962886946	56.892	0.60912	56.667	56.426	57.035	-0.22479					26	15	2	0	0	0	0.024381	1	6132	6132		37.159	12.956	1	754350			8261	3464;15399	5396	5411	9826	9826					0.02529750206326753
DPSLIWQY	8	Unmodified	_DPSLIWQY_					0	0	0		ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.26422119140625	2	511.2531	1020.49165	0.37434	0.00019138	-1.8451	-0.00094331	-1.4708	-0.00075193	511.2516428409534	79.116	0.37521	78.861	78.687	79.062	-0.25471					12	8	2	0	0	0	0.027866	1	9466	9466		25.45	13.939	1	125400			8262	6597	5397	5412	9827	9827					-0.017779213394419457
DPSLIWQY	8	Unmodified	_DPSLIWQY_					0	0	0		ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.2531	1020.49165	-0.45289	-0.00023154	-0.43643	-0.00022313	-0.88932	-0.00045467	511.2526018265107	78.951	0.79498	78.951	78.282	79.077	0	0.043322	0.00014494	NaN	18.324	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343680			8263	6597	5397	5412							-0.017779213394419457
DPSLIWQY	8	Unmodified	_DPSLIWQY_					0	0	0		ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.2531	1020.49165	-0.40204	-0.00020554	-0.38811	-0.00019842	-0.79015	-0.00040396	511.25255516326354	79.104	0.45602	78.932	78.653	79.109	-0.17226	0.024327	0.00019435	NaN	18.324	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357160			8264	6597	5397	5412							-0.017779213394419457
DPSLIWQY	8	Unmodified	_DPSLIWQY_					0	0	0		ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.2531	1020.49165	-0.30763	-0.00015728	0.39506	0.00020198	0.087432	4.47E-05	511.25361188997937	78.935	0.6691	78.954	78.441	79.11	0.018677	0.046098	0.00099514	NaN	18.324	32	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303090			8265	6597	5397	5412							-0.017779213394419457
DPSLIWQY	8	Unmodified	_DPSLIWQY_					0	0	0		ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.2531	1020.49165	0.088564	4.5279E-05	-1.1802	-0.00060339	-1.0917	-0.00055811	511.2521665874145	79.072	0.3726	78.84	78.65	79.023	-0.23141	-0.06723	-0.00061559	NaN	18.324	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145790			8266	6597	5397	5412							-0.017779213394419457
DPSLLCSIPLL	11	Unmodified	_DPSLLCSIPLL_					0	0	0		nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	585.2847290039062	2	585.825575	1169.6366	0.79791	0.00046744	1.7176	0.0010062	2.5155	0.0014737	585.8264344709022	50.171	0.68734	50.252	49.989	50.676	0.08099					42	20	3	0	0	0	0.024738	1	5220	5220		34.173	8.5985	1	1552100			8267	18044	5398	5413	9828	9828					0.058563787453977056
DPSVAKSQLL	10	Unmodified	_DPSVAKSQLL_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.328857421875	2	529.298039	1056.58152	-0.2006	-0.00010618	-0.62565	-0.00033115	-0.82625	-0.00043733	529.29792579032	77.442	0.54632	77.456	77.231	77.777	0.013504					21	12	2	0	0	0	0.03519	1	9498	9498		47.657	8.4045	1	171240			8268	3172	5399	5414	9829	9829					0.055497082691545074
DPSVKRTL	8	Unmodified	_DPSVKRTL_					0	0	0		ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21;ENST00000498414.5_1_6:30313175-30313451:+|nuORF;ENST00000466327.5_1_6:30312945-30313451:+|nuORF	ENST00000473266.1_1_6:30313175-30314584:+|nuORF	ENST00000473266.1_1_6:30313175-30314584:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.26641845703125	2	458.266542	914.51853	-1.1953	-0.00054775	1.263	0.00057881	0.067764	3.1054E-05	458.26695720914114	28.625	0.97029	28.38	28.041	29.011	-0.24524					54	22	4	0	0	0	0.71063	1	1682	1682		66.429	3.4509	1	1818100			8269	10781	5400	5415	9830	9830					0.05785187271760606
DPSVLSRVS	9	Unmodified	_DPSVLSRVS_					0	0	0		ARL6IP1|p.G69R|1|0.13|ENSG00000170540|chr16:18798010-18798010|C/G|missense_variant	ARL6IP1|p.G69R|1|0.13|ENSG00000170540|chr16:18798010-18798010|C/G|missense_variant	ARL6IP1|p.G69R|1|0.13|ENSG00000170540|chr16:18798010-18798010|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.75018310546875	2	480.261456	958.50836	-0.40194	-0.00019304	0.53503	0.00025696	0.13309	6.392E-05	480.26146791693276	30.094	0.85772	30.102	29.597	30.455	0.0086708					41	20	3	0	0	0	0.024436	1	1933	1933		23.042	0	1	962750			8270	128	5401	5416	9831	9831					0.027445795465382616
DPSVRLKI	8	Unmodified	_DPSVRLKI_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.26123046875	2	464.284734	926.554916	-0.17024	-7.9041E-05	-2.1443	-0.00099556	-2.3145	-0.0010746	464.283325966274	59.971	0.60162	59.722	59.417	60.019	-0.24842					22	15	2	0	0	0	0.027866	1	6638	6638		45.952	0	1	152630			8271	6076	5402	5417	9832	9832					0.08870064168456793
DPSWPGPE	8	Unmodified	_DPSWPGPE_					0	0	0			REV__ENST00000331758.7_1_20:60733756-60736577:+|nuORF	REV__ENST00000331758.7_1_20:60733756-60736577:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78814697265625	2	442.692875	883.371197	-0.22276	-9.8615E-05	-2.9412	-0.0013021	-3.164	-0.0014007	442.6914836301878	42.937	0.27165	42.711	42.521	42.793	-0.22597					10	6	2	0	0	0	0.027866	1	3880	3880		42.474	19.432	1	61000	+		8272	30480	5403	5418	9833	9833					-0.07515329333045884
DPTCVRAETPL	11	Unmodified	_DPTCVRAETPL_					0	0	0			REV__ENST00000361060.5_1_2:69601227-69614343:-|nuORF	REV__ENST00000361060.5_1_2:69601227-69614343:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.23046875	3	401.200901	1200.58087	0.2572	0.00010319	2.611	0.0010476	2.8682	0.0011507	401.20205674646553	22.486	1.2216	22.411	21.745	22.966	-0.075296					38	25	4	0	0	0	0.024752	1	752	752		12.433	0	1	99834	+		8273	30929	5404	5419	9834	9834					-0.011394544422046238
DPTDEIPTK	9	Unmodified	_DPTDEIPTK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.28173828125	2	508.250754	1014.48696	1.5982	0.00081226	2.3309	0.0011847	3.9291	0.001997	508.25212242079283	23.42	0.32618	23.229	23.034	23.36	-0.19117					13	7	3	0	0	0	0.024427	1	882	882		19.997	2.6318	1	279970			8274	6721	5405	5420	9835	9835					-0.01970850272869029
DPTGTALGISV	11	Unmodified	_DPTGTALGISV_					0	0	0		ENSG00000102924|ENST00000219197|CBLN1	ENSG00000102924|ENST00000219197|CBLN1	ENSG00000102924|ENST00000219197|CBLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7588500976562	2	515.774396	1029.53424	-0.053198	-2.7438E-05	0.41459	0.00021383	0.36139	0.0001864	515.7743155625251	73.931	0.20226	73.666	73.485	73.687	-0.26479					7	4	2	0	0	0	0.024775	1	8701	8701		54.722	1.3709	1	213890			8275	2446	5406	5421	9836	9836					0.02065428998139396
DPTLLPPI	8	Unmodified	_DPTLLPPI_					0	0	0			REV__ENST00000553230.1_1_12:56711395-56712273:-|nuORF	REV__ENST00000553230.1_1_12:56711395-56712273:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.73199462890625	2	433.255111	864.49567	0.98206	0.00042548	-2.9966	-0.0012983	-2.0145	-0.00087279	433.25334221198455	98.427	0.45786	98.425	98.182	98.64	-0.0020828					16	10	2	0	0	0	0.027866	1	12473	12473		25.45	0	1	58075	+		8276	34967	5407	5422	9837	9837					0.058001681542691585
DPTLRTKQP	9	Unmodified	_DPTLRTKQP_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2763671875	2	528.29583	1054.57711	-1.2449	-0.00065765	1.619	0.00085531	0.37415	0.00019766	528.2966355526133	49.111	0.47735	49.186	48.913	49.391	0.074196					21	12	2	0	0	0	0.024473	1	4945	4945		33.922	7.2287	1	373630			8277	4791	5408	5423	9838	9838					0.052002438462295686
DPTMWDTI	8	Unmodified	_DPTMWDTI_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.27703857421875	2	489.715493	977.416433	-0.0079736	-3.9048E-06	3.7432	0.0018331	3.7352	0.0018292	489.7171636077062	76.414	0.45078	76.426	76.325	76.775	0.011635					15	10	2	0	0	0	0.027866	1	9357	9357		47.916	31.442	1	92801			8278	18521	5409	5424	9839	9839					-0.0731784686215633
DPTPGPVRRA	10	Unmodified	_DPTPGPVRRA_					0	0	0			REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF	REV__ENST00000455062.2_1_7:74197704-74203407:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7684936523438	2	533.293622	1064.57269	-0.83194	-0.00044367	-1.0329	-0.00055086	-1.8649	-0.00099453	533.2928025906907	23.163	0.17084	23.102	22.981	23.152	-0.060862					5	3	2	0	0	0	0.03519	1	857	857		30.318	0	1	22539	+		8279	32210	5410	5425	9840	9840					0.042987794233113164
DPTTCALKT	9	Unmodified	_DPTTCALKT_					0	0	0		ENST00000453337.1_2_6:33041307-33041388:-|nuORF	ENST00000453337.1_2_6:33041307-33041388:-|nuORF	ENST00000453337.1_2_6:33041307-33041388:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7924499511719	2	475.236593	948.458632	0.65932	0.00031333	-3.8852	-0.0018464	-3.2259	-0.0015331	475.23470974521337	56.317	1.6386	56.317	55.858	57.496	0					82	45	3	0	0	0	0.024466	1	6280	6280		39.253	5.7372	1	941920			8280	14547	5411	5426	9841	9841					-0.017658714537901687
DPTVAAARA	9	Unmodified	_DPTVAAARA_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.7403564453125	2	436.235242	870.45593	0.17901	7.8092E-05	-2.552	-0.0011133	-2.373	-0.0010352	436.23480788191273	45.269	0.47001	45.313	45.11	45.58	0.04388					14	13	2	0	0	0	0.02435	1	4298	4298		42.396	1.618	1	109340	+		8281	24559	5412	5427	9842	9842					0.01552041203558474
DPTYFEPK	8	Unmodified	_DPTYFEPK_					0	0	0			REV__ENSG00000100031|ENST00000400382|GGT1;REV__nc|ENSG00000133475|P36268-2|GGT2P	REV__ENSG00000100031|ENST00000400382|GGT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7693176269531	2	498.737283	995.460012	0.33688	0.00016801	0.46268	0.00023075	0.79956	0.00039877	498.73725638698875	24.798	0.45202	24.876	24.639	25.091	0.078346					13	9	2	0	0	0	0.027866	1	1086	1086		26.796	1.3459	1	31659	+		8282	21036;36672	5413	5428	9843	9843					-0.03789914093374591
DPVAQPTPTQ	10	Unmodified	_DPVAQPTPTQ_					0	0	0			REV__ENST00000343242.8_1_7:1580779-1580905:+|nuORF	REV__ENST00000343242.8_1_7:1580779-1580905:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.8223266601562	2	527.264196	1052.51384	-0.8792	-0.00046357	0.51529	0.00027169	-0.36391	-0.00019188	527.2642983939282	32.762	0.37735	32.768	32.589	32.967	0.0066261					16	9	2	0	0	0	0.03519	1	2272	2272		32.812	17.171	1	333360	+		8283	30664	5414	5429	9844	9844					-0.01031741661677188
DPVEVSALPP	10	Unmodified	_DPVEVSALPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.269775390625	2	512.27149	1022.52843	-0.24649	-0.00012627	-0.34477	-0.00017662	-0.59126	-0.00030289	512.2709906728722	104.04	1.3639	104.04	103.63	105	0					74	36	3	0	0	0	1.0142	1	13354	13354		44.117	0	1	306250	+		8284	23649	5415	5430	9845	9845					0.01806330486465413
DPVEVSALPP	10	Unmodified	_DPVEVSALPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2705688476562	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	1.0271	3	13601	13590;13601;13657		42.396	11.13	1	6386000	+		8285	23649	5415	5430	9846;9847;9848	9847					0.01806330486465413
DPVEVSALPP	10	Unmodified	_DPVEVSALPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2700805664062	2	512.27149	1022.52843	-0.15004	-7.6862E-05	-0.45289	-0.000232	-0.60293	-0.00030886	512.270910752159	104.19	1.4432	104.18	103.73	105.17	-0.0032196					89	40	3	0	0	0	1.1267	1	13298	13298		29.15	0	1	318570	+		8286	23649	5415	5430	9849	9849					0.01806330486465413
DPVEVSALPP	10	Unmodified	_DPVEVSALPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2705688476562	2	512.27149	1022.52843	-0.23912	-0.0001225	-0.81194	-0.00041593	-1.0511	-0.00053843	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	1.0781	2	13608	13608;13647		35.618	0.65696	1	6463600	+		8287	23649	5415	5430	9850;9851	9850					0.01806330486465413
DPVEVSALPP	10	Unmodified	_DPVEVSALPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2704467773438	2	512.27149	1022.52843	-0.053609	-2.7462E-05	-1.1778	-0.00060337	-1.2314	-0.00063083	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	1.089	1	13267	13267		34.173	0	1	4944800	+		8288	23649	5415	5430	9852	9852					0.01806330486465413
DPVGSNKLSN	10	Unmodified	_DPVGSNKLSN_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.8389282226562	2	515.76182	1029.50909	0.17815	9.1882E-05	2.9416	0.0015172	3.1198	0.0016091	515.762901354197	57.518	0.22172	57.32	57.214	57.436	-0.19747					8	5	2	0	0	0	0.03519	1	6274	6274		39.253	5.7372	1	48496	+		8289	27144	5416	5431	9853	9853					-0.004486258044153146
DPVHRHRQ	8	Unmodified	_DPVHRHRQ_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000556277.5_1_14:24034355-24036984:-|nuORF;ENST00000553629.5_1_14:24035015-24036984:-|nuORF;ENST00000553685.1_1_14:24036229-24036984:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.801025390625	2	522.775931	1043.53731	-0.19478	-0.00010183	3.7678	0.0019697	3.573	0.0018679	522.7797128494103	19.609	0.56347	19.609	19.366	19.929	0					18	11	3	0	0	0	0.027866	1	449	449		40.573	1.7665	1	170850			8290	10532	5417	5432	9854	9854					0.017281616861737348
DPVITTYGN	9	Unmodified	_DPVITTYGN_					0	0	0			REV__ENST00000511963.5_1_5:10286382-10290874:-|nuORF	REV__ENST00000511963.5_1_5:10286382-10290874:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.258056640625	2	490.24019	978.465826	-0.12177	-5.9696E-05	3.6045	0.0017671	3.4828	0.0017074	490.2416226172867	105.02	0.36015	105.02	104.81	105.17	-0.0015945					15	12	2	0	0	0	0.024323	1	13422	13422		44.117	14.275	1	37765	+		8291	25722	5418	5433	9855	9855					-0.0242681558172535
DPVLTLPAE	9	Unmodified	_DPVLTLPAE_					0	0	0		SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2635803222656	2	477.760758	953.506963	-1.4785	-0.00070638	-1.4884	-0.00071108	-2.9669	-0.0014175	477.7599378631705	38.454	0.80179	38.481	38.23	39.032	0.027275					42	21	3	0	0	0	0.024427	1	3245	3245		26.693	11.051	1	1631000			8292	37969	5419	5434	9856	9856					0.028349454577551114
DPVLTLPAE	9	Unmodified	_DPVLTLPAE_					0	0	0		SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.760758	953.506963	-0.36327	-0.00017356	-2.4833	-0.0011864	-2.8466	-0.00136	477.7594257456898	38.297	0.72371	38.297	38.037	38.761	0	0.049788	-9.9485E-05	NaN	26.693	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1591200			8293	37969	5419	5434							0.028349454577551114
DPVLTLPAE	9	Unmodified	_DPVLTLPAE_					0	0	0		SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	477.760758	953.506963	-0.45649	-0.0002181	-2.9755	-0.0014216	-3.432	-0.0016397	477.75944184245384	38.366	1.054	38.187	37.522	38.576	-0.17929	-0.06085	-0.00056977	NaN	26.693	63	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3290800			8294	37969	5419	5434							0.028349454577551114
DPVLTLPAE	9	Unmodified	_DPVLTLPAE_					0	0	0		SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	477.760758	953.506963	-0.79014	-0.0003775	-2.3208	-0.0011088	-3.111	-0.0014863	477.7595827863292	38.391	0.71974	38.17	37.898	38.617	-0.22149	-0.07752	5.5785E-05	NaN	26.693	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3489500			8295	37969	5419	5434							0.028349454577551114
DPVLTLPAE	9	Unmodified	_DPVLTLPAE_					0	0	0		SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	SRMS|p.P42L|1|0.23|ENSG00000125508|chr20:63547339-63547339|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	477.760758	953.506963	-0.31069	-0.00014844	-2.9081	-0.0013894	-3.2188	-0.0015378	477.7593033193202	38.44	0.681	38.222	37.926	38.607	-0.21849	-0.025672	-0.00050534	NaN	26.693	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4367800			8296	37969	5419	5434							0.028349454577551114
DPVPDPRAVNQ	11	Unmodified	_DPVPDPRAVNQ_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2070007324219	3	403.207043	1206.5993	1.7549	0.00070757	-1.7592	-0.00070931	-0.004315	-1.7399E-06	403.2063348126522	35.06	1.1418	35.104	34.756	35.898	0.044056					86	29	5	0	0	0	0.86757	1	2598	2598		53.597	5.6373	1	7299400			8297	8466	5420	5435	9857	9857					0.0042642352398161165
DPVPYINGKV	10	Unmodified	_DPVPYINGKV_					0	0	0			REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.3265991210938	2	551.300581	1100.58661	0.58495	0.00032248	2.385	0.0013149	2.97	0.0016373	551.3020158691231	98.944	0.37253	98.808	98.681	99.053	-0.13589					14	8	2	0	0	0	0.03519	1	12281	12281		14.865	0	1	53725	+		8298	20796	5421	5436	9858	9858					0.04034012131751297
DPVQKAVL	8	Unmodified	_DPVQKAVL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25909423828125	2	435.258185	868.501818	-0.14088	-6.132E-05	0.40848	0.00017779	0.2676	0.00011647	435.258235100891	43.345	0.88059	43.232	42.891	43.772	-0.11253					56	23	4	0	0	0	0.30053	2	3968	3968;3978		111.65	0	1	2889400			8299	6886	5422	5437	9859;9860	9859					0.062306863857997996
DPVQKAVL	8	Unmodified	_DPVQKAVL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2589416503906	2	435.258185	868.501818	-0.49771	-0.00021663	0.71189	0.00030986	0.21418	9.3225E-05	435.25835067611285	43.479	0.87983	43.242	42.917	43.797	-0.23736					57	23	4	0	0	0	0.30053	1	3979	3979		111.65	0	1	2769500			8300	6886	5422	5437	9861	9861					0.062306863857997996
DPVSTHEPQTK	11	Unmodified	_DPVSTHEPQTK_					0	0	0		nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-5|SHTN1	nc|ENSG00000187164|A0MZ66-5|SHTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8816833496094	3	413.53857	1237.59388	-1.2884	-0.00053281	-2.9383	-0.0012151	-4.2268	-0.0017479	413.5369134121164	29.062	0.56338	28.817	28.491	29.055	-0.24524					17	12	2	0	0	0	0.024702	1	1768	1768		49.466	0	1	56192			8301	9612	5423	5438	9862	9862					-0.015413000584885594
DPVVKPKT	8	Unmodified	_DPVVKPKT_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.7351379394531	2	442.26601	882.517468	-0.31579	-0.00013966	1.0371	0.00045865	0.72126	0.00031899	442.2668599971071	23.701	0.21189	23.521	23.395	23.607	-0.17989					6	4	2	0	0	0	0.027866	1	946	946		21.96	5.4867	1	10382			8302	1365	5424	5439	9863	9863					0.07150972902854846
DPVWPEEERVQ	11	Unmodified	_DPVWPEEERVQ_					0	0	0			REV__nc|ENSG00000166261|O95125-2|ZNF202	REV__nc|ENSG00000166261|O95125-2|ZNF202	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.75909423828125	3	461.889491	1382.64664	0.13687	6.3219E-05	-2.6631	-0.00123	-2.5262	-0.0011668	461.88817126599383	36.692	0.55791	36.73	36.444	37.002	0.038044					36	14	3	0	0	0	0.024779	1	2863	2863		16.53	0	1	541340	+		8303	25995	5425	5440	9864	9864					-0.029373419956755242
DPWTAKKV	8	Unmodified	_DPWTAKKV_					0	0	0		ENSG00000256870|ENST00000536262|SLC5A8	ENSG00000256870|ENST00000536262|SLC5A8	ENSG00000256870|ENST00000536262|SLC5A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718811035156	2	472.763635	943.512717	0.81198	0.00038388	0.45182	0.0002136	1.2638	0.00059748	472.7613901934349	40.39	0.49361	40.39	39.988	40.481	0					21	13	2	0	0	0	0.027866	1	3493	3493		42.396	0	1	74437			8304	10911	5426	5441	9865	9865					0.03870088760083945
DPWTIWVM	8	Unmodified	_DPWTIWVM_					0	0	0		ENST00000251047.5_1_18:56995836-56996004:-|nuORF	ENST00000251047.5_1_18:56995836-56996004:-|nuORF	ENST00000251047.5_1_18:56995836-56996004:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2485961914062	2	524.252046	1046.48954	-0.92668	-0.00048581	0.9084	0.00047623	-0.018284	-9.5854E-06	524.2524543333445	26.722	0.3653	26.486	26.341	26.707	-0.23603					15	8	2	0	0	0	0.027866	1	1440	1440		13.775	3.5101	1	353580			8305	11349	5427	5442	9866	9866					-0.0318467334889192
DPYLKPYAV	9	Unmodified	_DPYLKPYAV_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7591552734375	2	533.2844	1064.55425	-0.40728	-0.0002172	-0.25961	-0.00013845	-0.6669	-0.00035565	533.2848622985874	58.778	1.2172	58.59	58.007	59.224	-0.18795					81	29	4	0	0	0	0.024288	1	6470	6470		71.877	24.22	1	2068600			8306	3367	5428	5443	9867	9867					0.024552247287601858
DPYLKPYAV	9	Unmodified	_DPYLKPYAV_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.759033203125	2	533.2844	1064.55425	0.28003	0.00014934	-1.9577	-0.001044	-1.6777	-0.00089468	533.2840450250907	58.685	1.0931	58.443	58.044	59.137	-0.24165					65	26	4	0	0	0	0.0242	1	6470	6470		69.628	23.655	1	1945400			8307	3367	5428	5443	9868	9868					0.024552247287601858
DPYQKATL	8	Unmodified	_DPYQKATL_					0	0	0			REV__nc|ENSG00000107036|Q4ADV7-2|RIC1;REV__nc|ENSG00000107036|Q4ADV7-3|RIC1	REV__nc|ENSG00000107036|Q4ADV7-3|RIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.244873046875	2	468.245275	934.475997	0.84537	0.00039584	-1.803	-0.00084423	-0.9576	-0.00044839	468.2442937403857	103.2	1.893	103.19	102.28	104.18	-0.0046005					118	45	4	0	0	0	0.97924	1	13139	13139		40.573	2.7611	1	6166300	+		8308	36549;21652	5429	5444	9869	9869					0.006137921435311
DPYSQPPLT	9	Unmodified	_DPYSQPPLT_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2921447753906	2	509.248015	1016.48148	-0.93307	-0.00047516	0.73258	0.00037306	-0.20049	-0.0001021	509.24826443920335	64.891	0.64286	64.688	64.42	65.063	-0.20254					37	15	3	0	0	0	0.024447	1	7361	7361		25.574	0	1	1045800			8309	1189	5430	5445	9870	9870					-0.026105290646682988
DPYYGWHLLVQ	11	Unmodified	_DPYYGWHLLVQ_					0	0	0			REV__SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	REV__SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7640380859375	3	464.231189	1389.67174	-0.83043	-0.00038551	-4.2919	-0.0019924	-5.1223	-0.0023779	464.22937414233485	21.841	0.38647	21.628	21.458	21.845	-0.2128					11	7	2	0	0	0	0.024723	1	685	685		28.577	8.5463	1	26643	+		8310	23949	5431	5446	9871	9871					-0.007512424024525899
DQAGLRVL	8	Unmodified	_DQAGLRVL_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.76123046875	2	436.253434	870.492316	0.0037002	1.6142E-06	0.35173	0.00015344	0.35543	0.00015506	436.2534633251442	33.895	1.0535	33.891	33.637	34.691	-0.0045624					54	26	3	0	0	0	0.027866	1	2512	2512		38.806	0	1	1297200	+		8311	26010	5432	5447	9872	9872					0.051889181002820806
DQAGLRVL	8	Unmodified	_DQAGLRVL_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.76123046875	2	436.253434	870.492316	0.025881	1.129E-05	0.27114	0.00011829	0.29702	0.00012958	436.25341765406813	33.854	1.2232	33.91	33.423	34.646	0.056572					58	30	3	0	0	0	0.027866	1	2467	2467		47.916	0	1	1100500	+		8312	26010	5432	5447	9873	9873					0.051889181002820806
DQAILQRIKK	10	Unmodified	_DQAILQRIKK_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3;ENST00000478858.5_1_1:23767892-23782684:-|nuORF	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	404.918945	1211.73501	0.526	0.00021299	2.0269	0.00082071	2.5529	0.0010337	405.2527746302402	32.197	0.64629	31.961	31.611	32.258	-0.23667					18	14	2	0	0	0	0.03519	1	2177	2177		39.873	17.312	1	42891			8313	1864	5433	5448	9874	9874					0.13760743105444817
DQAKGKKPL	9	Unmodified	_DQAKGKKPL_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7794494628906	2	492.795466	983.57638	0.18827	9.2778E-05	-3.0967	-0.001526	-2.9084	-0.0014333	492.7903000536342	57.624	0.66566	57.433	57.008	57.674	-0.19018					37	17	3	0	0	0	0.023635	1	6306	6306		56.721	0	1	642140			8314	5431	5434	5449	9875	9875					0.08393449197183145
DQALAQLRA	9	Unmodified	_DQALAQLRA_					0	0	0		ENSG00000248712|ENST00000503566|CCDC153;nc|ENSG00000248712|Q494R4-2|DRC12;ENST00000375140.7_1_11:119061011-119064134:-|nuORF	ENSG00000248712|ENST00000503566|CCDC153	ENSG00000248712|ENST00000503566|CCDC153	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.779541015625	2	493.274898	984.535243	-0.88409	-0.0004361	-3.5892	-0.0017705	-4.4733	-0.0022066	493.2729223579258	81.123	0.87925	81.147	80.573	81.452	0.023911					28	21	2	0	0	0	0.024477	1	10058	10058		35.618	7.736	1	319770			8315	10834	5435	5450	9876	9876					0.04235688157700679
DQALSNARLF	10	Unmodified	_DQALSNARLF_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant	ENSG00000127603|ENST00000564288|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.7803955078125	2	567.798737	1133.58292	-0.49757	-0.00028252	1.1495	0.00065271	0.65197	0.00037019	567.7992177912128	57.231	0.80994	57.064	56.714	57.524	-0.1672					55	21	4	0	0	0	0.03519	1	6234	6234		27.882	0	1	810680			8316	4256	5436	5451	9877	9877					0.02147342357875459
DQANHAPHT	9	Unmodified	_DQANHAPHT_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.7229309082031	2	495.72303	989.431506	-0.1823	-9.037E-05	-0.5012	-0.00024846	-0.6835	-0.00033883	495.7226667960417	47.744	1.2398	47.591	47.265	48.505	-0.15301					89	36	4	0	0	0	0.5973	1	4792	4792		52.937	3.4952	1	7954500			8317	1818;17643	5437	5452	9878	9878					-0.06363218949968541
DQANHAPHT	9	Unmodified	_DQANHAPHT_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.722900390625	2	495.72303	989.431506	-0.79846	-0.00039582	-0.18702	-9.2712E-05	-0.98549	-0.00048853	495.72296237801766	47.511	1.231	47.57	47.214	48.445	0.059097					82	35	5	0	0	0	0.67687	1	4705	4705		47.657	5.1829	1	8585500			8318	1818;17643	5437	5452	9879	9879					-0.06363218949968541
DQANNYLLHC	10	Unmodified	_DQANNYLLHC_					0	0	0			REV__ENST00000485101.5_1_3:186506527-186506686:+|nuORF	REV__ENST00000485101.5_1_3:186506527-186506686:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	594.8323364257812	2	595.76658	1189.51861	-0.47184	-0.00028111	1.6225	0.00096663	1.1507	0.00068553	595.7673830771396	58.433	0.41585	58.255	58.103	58.519	-0.17775					12	9	2	0	0	0	0.03519	1	6398	6398		26.693	0	1	152140	+		8319	33555	5438	5453	9880	9880					-0.06857180790552775
DQASQLLAGT	10	Unmodified	_DQASQLLAGT_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2940673828125	2	502.256371	1002.49819	0.44668	0.00022435	4.1178	0.0020682	4.5644	0.0022925	502.2584083796817	78.147	0.46815	77.909	77.743	78.211	-0.23805					15	10	2	0	0	0	0.03519	1	9310	9310		47.96	5.0953	1	78470			8320	4441	5439	5454	9881	9881					-0.0029602817870681974
DQCCVRID	8	Unmodified	_DQCCVRID_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2608947753906	2	476.20477	950.394986	-0.55568	-0.00026462	-2.8266	-0.0013461	-3.3823	-0.0016107	476.20327669682916	28.266	0.27996	28.02	27.961	28.241	-0.24524					13	6	3	0	0	0	0.027866	1	1666	1666		18.324	0	1	125200	+		8321	21751	5440	5455	9882	9882					-0.08219555162543202
DQCSREFM	8	Unmodified	_DQCSREFM_					0	0	0		ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2819519042969	2	508.202227	1014.3899	0.25674	0.00013047	-2.9193	-0.0014836	-2.6625	-0.0013531	508.2008856282398	23.434	0.21823	23.232	23.061	23.279	-0.20193					5	4	2	0	0	0	0.027866	1	910	910		26.693	0	1	16523			8322	8213	5441	5456	9883	9883					-0.11671859025136655
DQDEARKIN	9	Unmodified	_DQDEARKIN_					0	0	0		ENST00000442677.3_1_10:73474007-73474583:+|nuORF	ENST00000442677.3_1_10:73474007-73474583:+|nuORF	ENST00000442677.3_1_10:73474007-73474583:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.823974609375	2	544.770177	1087.5258	-0.62946	-0.00034291	3.8816	0.0021146	3.2521	0.0017717	544.7723258231488	67.346	0.63311	67.346	67.049	67.682	0					46	15	4	0	0	0	0.024511	1	7997	7997		25.574	3.6142	1	2018800			8323	14385	5442	5457	9884	9884					-0.014461249184705594
DQDFELWDDV	10	Unmodified	_DQDFELWDDV_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2369689941406	3	427.847181	1280.51971	-1.4155	-0.00060562	-3.2918	-0.0014084	-4.7074	-0.002014	427.84535703609816	30.112	0.77301	30.112	29.611	30.384	0					20	18	2	0	0	0	0.03519	1	1911	1911		19.263	2.7328	1	45518			8324	4796	5443	5458	9885	9885					-0.10932687940680808
DQDHFLLV	8	Unmodified	_DQDHFLLV_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.8140563964844	2	493.750724	985.486896	-0.9879	-0.00048777	0.99077	0.00048919	0.0028707	1.4174E-06	493.7510929961144	53.593	0.69353	53.457	53.057	53.75	-0.13617					47	19	3	0	0	0	0.027866	1	5635	5635		45.952	0	1	3118000	+		8325	24020	5444	5459	9886	9886					-0.00642805482186759
DQDHFNLTT	9	Unmodified	_DQDHFNLTT_					0	0	0		CON__Q2KIU3	CON__Q2KIU3	CON__Q2KIU3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.282470703125	2	545.743628	1089.4727	-0.56489	-0.00030829	-2.6001	-0.001419	-3.165	-0.0017273	545.7419644610229	60.545	0.60422	60.339	60.091	60.695	-0.20599					34	14	3	0	0	0	0.024447	1	6704	6704		25.574	0	1	463140		+	8326	545	5445	5460	9887	9887					-0.06845502701162332
DQDHFNLTT	9	Unmodified	_DQDHFNLTT_					0	0	0		CON__Q2KIU3	CON__Q2KIU3	CON__Q2KIU3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.743628	1089.4727	-1.1071	-0.00060417	-2.3332	-0.0012733	-3.4403	-0.0018775	545.7421564467744	60.654	0.56553	60.4	60.132	60.697	-0.25373	0.039498	3.9383E-07	NaN	44.377	37	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646760		+	8327	545	5445	5460							-0.06845502701162332
DQDKLFYLVE	10	Unmodified	_DQDKLFYLVE_					0	0	0			REV__ZFYVE16|p.F1433L|1|0.07|ENSG00000039319|chr5:80474668-80474668|C/G|missense_variant	REV__ZFYVE16|p.F1433L|1|0.07|ENSG00000039319|chr5:80474668-80474668|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.2582092285156	3	423.883566	1268.62887	-0.00088576	-3.7546E-07	-2.6914	-0.0011408	-2.6923	-0.0011412	423.8820399497167	27.543	0.47669	27.301	27.076	27.553	-0.24217					19	10	3	0	0	0	0.03519	1	1502	1502		22.562	0	1	61791	+		8328	37798	5446	5461	9888	9888					0.005299427494719566
DQDLDMAKQW	10	Unmodified	_DQDLDMAKQW_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.1902770996094	3	417.188772	1248.54449	-0.10008	-4.1752E-05	3.6006	0.0015021	3.5005	0.0014604	417.19019575522447	51.221	0.76462	50.945	50.702	51.467	-0.27643					51	19	3	0	0	0	0.99657	1	5257	5257		46.457	5.0302	1	2080200	+		8329	20901	5447	5462	9889	9889					-0.0698433133893559
DQDVQLQTE	9	Unmodified	_DQDVQLQTE_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.824951171875	2	538.248743	1074.48293	-1.0807	-0.0005817	-1.3901	-0.00074824	-2.4709	-0.0013299	538.2478979305756	48.351	0.85077	48.198	47.795	48.646	-0.15301					32	24	2	0	0	0	0.024344	1	4921	4921		54.776	0	1	191030	+		8330	24243	5448	5463	9890	9890					-0.05132939766576783
DQEAAFMQIQ	10	Unmodified	_DQEAAFMQIQ_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	591.2991943359375	2	590.768788	1179.52302	-0.82873	-0.00048959	-2.8282	-0.0016708	-3.6569	-0.0021604	591.2697267107726	27.425	0.24605	27.268	27.145	27.391	-0.15664					7	5	2	0	0	0	0.03519	1	1499	1499		28.081	0	1	38013			8331	1939	5449	5464	9891	9891					-0.059557163676345226
DQEALVNTV	9	Unmodified	_DQEALVNTV_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7503662109375	2	494.750921	987.48729	0.0043124	2.1336E-06	-0.51333	-0.00025397	-0.50902	-0.00025184	494.7506803403842	45.458	0.80534	45.458	45.147	45.953	0					80	23	5	0	0	0	0.077175	1	4456	4456		118.74	6.3322	1	29563000	+		8332	26822	5450	5465	9892	9892					-0.006954305530143756
DQEEQTNIV	9	Unmodified	_DQEEQTNIV_					0	0	0			REV__nc|ENSG00000111729|Q9UMR7-4|CLEC4A	REV__nc|ENSG00000111729|Q9UMR7-4|CLEC4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.8253784179688	2	538.248743	1074.48293	-1.2183	-0.00065575	-1.7086	-0.00091968	-2.9269	-0.0015754	538.2477038166616	47.978	0.58576	48.044	47.716	48.301	0.066799					28	16	2	0	0	0	0.024288	1	4801	4801		62.107	0	1	202640	+		8333	21942	5451	5466	9893	9893					-0.05132939766576783
DQEKLLRES	9	Unmodified	_DQEKLLRES_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.31787109375	2	559.296027	1116.5775	-0.081884	-4.5797E-05	3.1164	0.001743	3.0345	0.0016972	559.2976274681229	64.419	0.74124	64.419	64.203	64.944	0					26	19	2	0	0	0	0.024374	1	7659	7659		19.104	1.6355	1	108190			8334	9098	5452	5467	9894	9894					0.023876187754240163
DQEKLLRES	9	Unmodified	_DQEKLLRES_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	559.296027	1116.5775	-1.1698	-0.00065424	5.1888	0.0029021	4.019	0.0022478	559.2987894923716	64.712	0.52893	64.449	64.193	64.722	-0.2626	0.011457	0.0017074	NaN	19.104	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120830			8335	9098	5452	5467							0.023876187754240163
DQEKLLRES	9	Unmodified	_DQEKLLRES_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	559.296027	1116.5775	0.19584	0.00010953	3.2408	0.0018126	3.4367	0.0019221	559.2977933676077	64.399	0.49078	64.445	64.225	64.715	0.045502	0.0068772	-0.00047153	NaN	19.104	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151630			8336	9098	5452	5467							0.023876187754240163
DQEPNSNES	9	Unmodified	_DQEPNSNES_					0	0	0			REV__ENSG00000166351|ENST00000299443|POTED;REV__ENSG00000196604|ENST00000409914|POTEF	REV__ENSG00000196604|ENST00000409914|POTEF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.3101501464844	2	510.19925	1018.38395	-0.12284	-6.2672E-05	-4.4603	-0.0022756	-4.5831	-0.0023383	510.6959413858304	77.374	0.16929	77.164	77.037	77.206	-0.21088					5	3	2	0	0	0	0.024511	1	9525	9525		25.574	1.3422	1	48585	+		8337	26006;28021	5453	5468	9895	9895					-0.12450962731463733
DQEQRDPL	8	Unmodified	_DQEQRDPL_					0	0	0		nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3;nc|ENSG00000131584|Q96P50-4|ACAP3;ENST00000467278.5_1_1:1228946-1234134:-|nuORF	nc|ENSG00000131584|Q96P50-1|ACAP3	nc|ENSG00000131584|Q96P50-1|ACAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7731018066406	2	500.738345	999.462138	-0.50704	-0.0002539	-2.351	-0.0011772	-2.8581	-0.0014311	500.73725063269285	25.644	2.1442	25.644	24.429	26.573	0					63	50	2	0	0	0	0.027866	1	1100	1100		45.952	0	1	95692			8338	4535	5454	5469	9896	9896					-0.03761485355573768
DQFAVPGEL	9	Unmodified	_DQFAVPGEL_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2425537109375	2	488.242732	974.470912	-0.35221	-0.00017196	0.30421	0.00014853	-0.047996	-2.3433E-05	488.2428816071837	60.975	1.0202	60.975	60.509	61.529	0					79	26	5	0	0	0	0.4752	1	7037	7037		60.972	2.19	1	2658100	+		8339	37528	5455	5470	9897	9897					-0.01734511719087095
DQFAVPGEL	9	Unmodified	_DQFAVPGEL_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.24237060546875	2	488.242732	974.470912	-0.98773	-0.00048225	1.1961	0.00058399	0.20839	0.00010174	488.24325652517774	60.91	0.94049	60.981	60.493	61.434	0.071125					71	24	4	0	0	0	0.20967	1	6935	6935		87.754	2.5935	1	2383300	+		8340	37528	5455	5470	9898	9898					-0.01734511719087095
DQFAVPGEL	9	Unmodified	_DQFAVPGEL_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	488.242732	974.470912	-0.35221	-0.00017196	0.30421	0.00014853	-0.047996	-2.3433E-05	488.2428816071837	60.975	1.0202	60.975	60.509	61.529	0	-0.006044	-0.00034772	NaN	87.754	79	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2658100	+		8341	37528	5455	5470							-0.01734511719087095
DQFAVPGEL	9	Unmodified	_DQFAVPGEL_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	488.242732	974.470912	-0.98773	-0.00048225	1.1961	0.00058399	0.20839	0.00010174	488.24325652517774	60.91	0.94049	60.981	60.493	61.434	0.071125	0.00061509	0.00052321	NaN	87.754	71	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2383300	+		8342	37528	5455	5470							-0.01734511719087095
DQFFTDTE	8	Unmodified	_DQFFTDTE_					0	0	0		KLF5|p.L130Sfs*3|1|0.17|ENSG00000102554|chr13:73061987-73061999|TTACCTTACAGTA/-|frameshift_variant;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000102554|ENST00000377687|KLF5;PIBF1-KLF5|1|fusion	KLF5|p.L130Sfs*3|1|0.17|ENSG00000102554|chr13:73061987-73061999|TTACCTTACAGTA/-|frameshift_variant	KLF5|p.L130Sfs*3|1|0.17|ENSG00000102554|chr13:73061987-73061999|TTACCTTACAGTA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.81805419921875	2	501.70618	1001.39781	-0.54576	-0.00027381	1.3528	0.00067871	0.80704	0.0004049	501.70665073240076	93.959	0.59695	93.965	93.689	94.286	0.0059814					31	14	4	0	0	0	0.027866	1	11861	11861		26.693	0	1	361910			8343	2415	5456	5471	9899	9899					-0.10283685232377593
DQFGCREI	8	Unmodified	_DQFGCREI_					0	0	0			REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.2174987792969	2	484.218734	966.422915	-0.18874	-9.1392E-05	-3.0596	-0.0014815	-3.2483	-0.0015729	484.21712946783265	55.491	0.76085	55.261	54.927	55.688	-0.23087					47	21	3	0	0	0	0.74904	1	5977	5977		63.306	3.0123	1	2127000	+		8344	27037	5457	5472	9900	9900					-0.06163908910775717
DQFGCREI	8	Unmodified	_DQFGCREI_					0	0	0			REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.218734	966.422915	-0.67599	-0.00032733	-2.4896	-0.0012055	-3.1656	-0.0015328	484.21735709238027	55.384	0.81208	55.238	54.911	55.723	-0.14609	-0.0087781	0.00033451	NaN	63.306	56	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1951200	+		8345	27037	5457	5472							-0.06163908910775717
DQFGCREI	8	Unmodified	_DQFGCREI_					0	0	0			REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	484.218734	966.422915	-0.18874	-9.1392E-05	-3.0596	-0.0014815	-3.2483	-0.0015729	484.21712946783265	55.491	0.76085	55.261	54.927	55.688	-0.23087	0.013952	-0.00021749	NaN	63.306	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2127000	+		8346	27037	5457	5472							-0.06163908910775717
DQFGCREI	8	Unmodified	_DQFGCREI_					0	0	0			REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	REV__ENST00000585094.1_1_17:30986131-31048108:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.218734	966.422915	-0.20909	-0.00010124	-2.9739	-0.00144	-3.183	-0.0015413	484.2171354021898	55.457	0.84898	55.241	54.931	55.78	-0.21551	-0.0051741	-0.00013455	NaN	63.306	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2319200	+		8347	27037	5457	5472							-0.06163908910775717
DQFHVILD	8	Unmodified	_DQFHVILD_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-3|VPS8	REV__nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.8135986328125	2	493.750724	985.486896	-0.21298	-0.00010516	-0.0045384	-2.2408E-06	-0.21752	-0.0001074	493.750603932568	53.592	0.65088	53.394	53.089	53.74	-0.19739					44	18	3	0	0	0	0.027866	1	5634	5634		49.442	0	1	2924200	+		8348	25100	5458	5473	9901	9901					-0.006428054821981277
DQFLSQVK	8	Unmodified	_DQFLSQVK_					0	0	0		sp|P0DKA0|VE8E2_HPV16ProteinE8^E2COS=Humanpapillomavirustype16OX=333760PE=1SV=1;sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	sp|P0DKA0|VE8E2_HPV16ProteinE8^E2COS=Humanpapillomavirustype16OX=333760PE=1SV=1	sp|P0DKA0|VE8E2_HPV16ProteinE8^E2COS=Humanpapillomavirustype16OX=333760PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.767822265625	2	482.758549	963.502546	-0.59091	-0.00028527	0.1042	5.0306E-05	-0.48671	-0.00023496	482.7581557271817	44.421	0.44999	44.316	44.099	44.549	-0.10468					15	11	2	0	0	0	0.027866	1	4139	4139		24.519	0.31644	1	188450			8349	37915	5459	5474	9902	9902					0.019334810348709652
DQFQKVLS	8	Unmodified	_DQFQKVLS_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.7685546875	2	482.758549	963.502546	-0.88737	-0.00042839	1.0006	0.00048304	0.1132	5.465E-05	482.7586854011725	44.551	0.36542	44.307	44.151	44.516	-0.2444					17	9	2	0	0	0	0.027866	1	4155	4155		27.882	11.409	1	213320			8350	4824	5460	5475	9903	9903					0.019334810348709652
DQGDLIDSI	9	Unmodified	_DQGDLIDSI_					0	0	0		ENSG00000117758|ENST00000373943|STX12	ENSG00000117758|ENST00000373943|STX12	ENSG00000117758|ENST00000373943|STX12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7909240722656	2	488.235104	974.455655	0.57588	0.00028116	-0.19805	-9.6696E-05	0.37783	0.00018447	488.2348632666549	83.557	0.58455	83.388	83.119	83.703	-0.16915					20	13	2	0	0	0	0.024374	1	10084	10084		32.812	0	1	122710			8351	3660	5461	5476	9904	9904					-0.03259423306928966
DQGKLWQLL	9	Unmodified	_DQGKLWQLL_					0	0	0		nc|ENSG00000104044|Q04671-3|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;ENSG00000104044|ENST00000354638|OCA2	nc|ENSG00000104044|Q04671-3|OCA2	nc|ENSG00000104044|Q04671-3|OCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2891235351562	2	550.808574	1099.60259	-0.71993	-0.00039655	0.86902	0.00047866	0.14909	8.2118E-05	551.3114988014562	48.17	0.55698	47.894	47.63	48.187	-0.27598					27	14	3	0	0	0	0.024539	1	4777	4777		9.7057	0	1	182250			8352	2539	5462	5477	9905	9905					0.05677718368656315
DQGKRETP	8	Unmodified	_DQGKRETP_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.75384521484375	2	465.735606	929.456658	-0.52184	-0.00024304	2.5996	0.0012107	2.0777	0.00096767	465.73751143573884	23.552	0.45568	23.491	23.229	23.685	-0.060862					14	10	2	0	0	0	0.027866	1	943	943		31.53	0	1	50914	+		8353	27517	5463	5478	9906	9906					-0.010891641473904201
DQGLGRTLCL	10	Unmodified	_DQGLGRTLCL_					0	0	0		ENST00000392563.5_1_17:73314637-73314766:-|nuORF	ENST00000392563.5_1_17:73314637-73314766:-|nuORF	ENST00000392563.5_1_17:73314637-73314766:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2808837890625	2	538.281866	1074.54918	-0.40735	-0.00021927	2.8371	0.0015272	2.4298	0.0013079	538.2840777455502	104.1	0.36081	103.94	103.72	104.08	-0.16791					10	8	2	0	0	0	1.0816	1	12938	12938		35.152	0.97948	1	73822			8354	13422	5464	5479	9907	9907					0.014885975944707752
DQGNDEEKINT	11	Unmodified	_DQGNDEEKINT_					0	0	0		ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.5206604003906	3	421.521356	1261.54224	0.01465	6.1755E-06	-1.6232	-0.0006842	-1.6085	-0.00067803	421.5205850248075	34.1	3.4468	33.876	32.186	35.632	-0.22412					154	86	4	0	0	0	1.0501	1	2474	2474		25.068	0.54859	1	682210			8355	121	5465	5480	9908	9908					-0.07807088543040663
DQGPTESPTSW	11	Unmodified	_DQGPTESPTSW_					0	0	0		ENSG00000183476|ENST00000328828|SH2D7	ENSG00000183476|ENST00000328828|SH2D7	ENSG00000183476|ENST00000328828|SH2D7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	602.759033203125	2	602.759475	1203.5044	-0.7808	-0.00047063	2.2429	0.0013519	1.4621	0.00088132	602.7605664478331	57.873	0.57355	57.695	57.358	57.932	-0.17775					39	14	4	0	0	0	0.56861	1	6331	6331		71.877	2.2498	1	5758500			8356	9233	5466	5481	9909	9909					-0.08921554737844417
DQGQDLQVCA	10	Unmodified	_DQGQDLQVCA_					0	0	0			REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	REV__ENST00000485925.5_1_9:136305545-136324175:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7540283203125	2	538.737488	1075.46042	-0.73804	-0.00039761	2.2316	0.0012023	1.4936	0.00080466	538.7390597369115	25.474	0.16414	25.302	25.2	25.365	-0.17151					5	3	2	0	0	0	0.03519	1	1173	1173		58.782	14.665	1	36828	+		8357	25312	5467	5482	9910	9910					-0.07428862435835981
DQGQLQLIL	9	Unmodified	_DQGQLQLIL_					0	0	0			REV__nc|ENSG00000128604|Q13568-5|IRF5	REV__nc|ENSG00000128604|Q13568-5|IRF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7894897460938	2	514.292756	1026.57096	0.054533	2.8046E-05	0.71531	0.00036788	0.76984	0.00039592	514.2925845598678	55.107	0.37564	55.107	54.908	55.284	0					18	10	2	0	0	0	0.024292	1	6099	6099		49.442	14.241	1	382610	+		8358	23000	5468	5483	9911	9911					0.058737256147196604
DQGQLQLIL	9	Unmodified	_DQGQLQLIL_					0	0	0			REV__nc|ENSG00000128604|Q13568-5|IRF5	REV__nc|ENSG00000128604|Q13568-5|IRF5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.292756	1026.57096	-0.21007	-0.00010804	-0.057703	-2.9676E-05	-0.26778	-0.00013772	514.2925958597165	55.166	0.30833	55.016	54.857	55.166	-0.15036	-0.045614	-0.0005155	NaN	47.657	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394440	+		8359	23000	5468	5483							0.058737256147196604
DQGQLQLIL	9	Unmodified	_DQGQLQLIL_					0	0	0			REV__nc|ENSG00000128604|Q13568-5|IRF5	REV__nc|ENSG00000128604|Q13568-5|IRF5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.292756	1026.57096	-0.85737	-0.00044094	1.4953	0.000769	0.63789	0.00032806	514.2930241129307	54.964	0.34658	55.062	54.769	55.116	0.098015	0.00022676	0.0010819	NaN	47.657	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311580	+		8360	23000	5468	5483							0.058737256147196604
DQGQPGAVAL	10	Unmodified	_DQGQPGAVAL_					0	0	0		nc|ENSG00000136828|Q5JS13-3|RALGPS1	nc|ENSG00000136828|Q5JS13-3|RALGPS1	nc|ENSG00000136828|Q5JS13-3|RALGPS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.9744873046875	2	478.245806	954.47706	-0.55312	-0.00026453	-0.30437	-0.00014557	-0.85749	-0.00041009	478.24564122111536	43.739	0.95777	43.594	43.205	44.162	-0.14471					70	26	4	0	0	0	0.03519	1	4175	4175		36.447	7.2767	1	1723300			8361	18309	5469	5484	9912	9912					-0.0019999348758119595
DQGRYKSLE	9	Unmodified	_DQGRYKSLE_					0	0	0			REV__CON__Q28085	REV__CON__Q28085	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.3003540039062	2	548.275095	1094.53564	-0.54414	-0.00029834	2.1218	0.0011633	1.5776	0.00086497	548.275857862333	59.475	0.59182	59.561	59.241	59.833	0.085682					24	15	2	0	0	0	0.024477	1	6692	6692		9.7057	0	1	129680	+	+	8362	19570	5470	5485	9913	9913					-0.00784936913078127
DQGSDAPARD	10	Unmodified	_DQGSDAPARD_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2919311523438	2	516.223059	1030.43157	-0.042038	-2.1701E-05	-1.1459	-0.00059152	-1.1879	-0.00061322	516.2224545050686	40.092	0.47129	40.092	39.843	40.314	0					20	12	2	0	0	0	0.03519	1	3495	3495		31.53	8.0071	1	347230			8363	5686	5471	5486	9914	9914					-0.08243263740632756
DQGSDAPARD	10	Unmodified	_DQGSDAPARD_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.293701171875	2	516.223059	1030.43157	-0.3052	-0.00015755	-0.59901	-0.00030923	-0.90421	-0.00046678	516.2227476120188	40.137	0.65673	40.025	39.83	40.487	-0.11223					28	17	2	0	0	0	0.03519	1	3491	3491		33.922	4.7516	1	359420			8364	5686	5471	5486	9915	9915					-0.08243263740632756
DQGTTESTEH	10	Unmodified	_DQGTTESTEH_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7591552734375	2	552.725632	1103.43671	-1.4787	-0.00081729	2.517	0.0013912	1.0384	0.00057394	552.7269285795203	52.36	0.10703	52.091	52.018	52.125	-0.26903					4	2	2	0	0	0	0.03519	1	5421	5421		23.523	0	1	39047			8365	6965	5472	5487	9916	9916					-0.11087004668661393
DQGWGARA	8	Unmodified	_DQGWGARA_					0	0	0			REV__ENST00000443842.1_1_3:50335366-50336690:-|nuORF	REV__ENST00000443842.1_1_3:50335366-50336690:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.2662658691406	2	430.704109	859.393664	1.0807	0.00046548	3.5715	0.0015383	4.6522	0.0020037	430.705440154896	20.516	0.73681	20.32	19.993	20.73	-0.19577					22	14	2	0	0	0	0.027866	1	580	580		23.042	0	1	32119	+		8366	32582	5473	5488	9917	9917					-0.04165685144778308
DQHGLIQPG	9	Unmodified	_DQHGLIQPG_					0	0	0		nc|ENSG00000129646|Q9H0J4-2|QRICH2;nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2923889160156	2	482.745973	963.477394	-0.28944	-0.00013973	0.27575	0.00013311	-0.013698	-6.6129E-06	482.745638047752	57.225	0.93181	57.058	56.714	57.646	-0.1672					39	24	2	0	0	0	0.024292	1	6319	6319		40.778	6.6056	1	161910			8367	4361	5474	5489	9918	9918					-0.005805737677178513
DQHHIANL	8	Unmodified	_DQHHIANL_					0	0	0		nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	nc|ENSG00000065970|Q9P0K8-2|FOXJ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2648010253906	2	474.238316	946.462078	-0.17462	-8.2812E-05	3.8359	0.0018192	3.6613	0.0017363	474.2395352040513	44.33	0.43223	44.33	44.12	44.553	0					14	12	2	0	0	0	0.027866	1	4220	4220		42.396	0	1	62912			8368	1325	5475	5490	9919	9919					-0.0132944056491624
DQHVHCLQDL	10	Unmodified	_DQHVHCLQDL_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.53643798828125	3	403.188995	1206.54516	0.35112	0.00014157	-2.6927	-0.0010857	-2.3416	-0.0009441	403.187976364204	35.339	0.62341	35.123	34.833	35.457	-0.21555					25	15	3	0	0	0	0.03519	1	2654	2654		33.039	13.009	1	141910			8369	5576	5476	5491	9920	9920					-0.04985491899219596
DQHYPKWNR	9	Unmodified	_DQHYPKWNR_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.5681457519531	3	415.203744	1242.5894	-1.4276	-0.00059276	-2.7901	-0.0011585	-4.2177	-0.0017512	415.20254753494817	29.015	0.60657	28.77	28.448	29.055	-0.24524					26	13	3	0	0	0	0.0245	1	1757	1757		22.58	0	1	77206	+		8370	26866	5477	5492	9921	9921					-0.022187196907452744
DQIAGKLVNS	10	Unmodified	_DQIAGKLVNS_					0	0	0			REV__nc|ENSG00000138075|Q9H222-2|ABCG5	REV__nc|ENSG00000138075|Q9H222-2|ABCG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.326904296875	2	522.787838	1043.56112	-0.56968	-0.00029782	0.38614	0.00020187	-0.18354	-9.5954E-05	522.7879645220617	54.847	0.8558	54.945	54.591	55.447	0.098015					37	23	4	0	0	0	0.03519	1	6019	6019		39.253	0	1	844020	+		8371	23813	5478	5493	9922	9922					0.04108537609317864
DQIEEPKDK	9	Unmodified	_DQIEEPKDK_					0	0	0			REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.8345336914062	2	551.274761	1100.53497	-0.38664	-0.00021315	-1.3544	-0.00074667	-1.7411	-0.00095981	551.273903371455	65.966	0.77671	65.996	65.382	66.159	0.030106					38	20	2	0	0	0	0.024	1	7761	7761		78.264	21.543	1	198430	+		8372	34063	5479	5494	9923	9923					-0.011277763528141804
DQIEEPKDK	9	Unmodified	_DQIEEPKDK_					0	0	0			REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.274761	1100.53497	-0.28809	-0.00015882	-2.4765	-0.0013652	-2.7645	-0.001524	551.2735484881694	66.154	0.52438	65.913	65.583	66.108	-0.24145	0.0032708	-0.00077871	NaN	59.931	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138180	+		8373	34063	5479	5494							-0.011277763528141804
DQIEEPKDK	9	Unmodified	_DQIEEPKDK_					0	0	0			REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	551.274761	1100.53497	-0.69281	-0.00038193	-1.6845	-0.00092863	-2.3773	-0.0013106	551.2742865856097	66.161	0.83163	65.948	65.547	66.378	-0.21328	0.03858	9.444E-05	NaN	59.931	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135870	+		8374	34063	5479	5494							-0.011277763528141804
DQIEEPKDK	9	Unmodified	_DQIEEPKDK_					0	0	0			REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	REV__ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	551.274761	1100.53497	-0.51273	-0.00028266	-3.4066	-0.001878	-3.9194	-0.0021607	551.2739058818024	66.089	0.74751	65.838	65.561	66.309	-0.25112	-0.071369	-0.0018043	NaN	59.931	28	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94566	+		8375	34063	5479	5494							-0.011277763528141804
DQIEITNEFLT	11	Unmodified	_DQIEITNEFLT_					0	0	0			REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF	REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78741455078125	3	441.553997	1321.64016	-0.39304	-0.00017355	2.4838	0.0010967	2.0907	0.00092317	441.5563737560061	43.287	0.10825	43.061	42.989	43.097	-0.22597					6	2	3	0	0	0	0.02473	1	3939	3939		23.514	0	1	34620	+		8376	33204	5480	5495	9924	9924					-0.007792799470507816
DQIIEQRHQQV	11	Unmodified	_DQIIEQRHQQV_					0	0	0			REV__ENSG00000123908|ENST00000220592|AGO2	REV__ENSG00000123908|ENST00000220592|AGO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2791442871094	3	465.244268	1392.71098	0.067847	3.1565E-05	0.93438	0.00043472	1.0022	0.00046628	465.24485254781365	51.413	0.66055	51.413	51.143	51.803	0					40	18	3	0	0	0	0.024779	1	5419	5419		21.78	0	1	1039800	+		8377	22719	5481	5496	9925	9925					0.03032857881134987
DQIKLMNVA	9	Unmodified	_DQIKLMNVA_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T594Nfs*5|1|0.13|ENSG00000127914|chr7:92001697-92001712|ACAAATTACAAGATAA/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8265380859375	2	516.281334	1030.54812	-0.34697	-0.00017914	-2.7675	-0.0014288	-3.1145	-0.0016079	516.2795019079775	57.454	1.011	57.22	56.613	57.624	-0.23363					33	26	2	0	0	0	0.024292	1	6209	6209		49.442	1.7842	1	285650			8378	4266	5482	5497	9926	9926					0.03406383225569698
DQIKTSVMN	9	Unmodified	_DQIKTSVMN_					0	0	0			REV__nc|ENSG00000104814|Q92918|MAP4K1	REV__nc|ENSG00000104814|Q92918|MAP4K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.265625	2	518.260599	1034.50665	-0.64982	-0.00033677	-0.49219	-0.00025508	-1.142	-0.00059186	518.2595472570174	57.054	0.33226	57.149	56.911	57.243	0.09531					11	8	2	0	0	0	0.023239	1	6314	6314		64.207	0	1	72651	+		8379	36532	5483	5498	9927	9927					-0.0092279753373532
DQILEEMNFF	10	Unmodified	_DQILEEMNFF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.93438720703125	3	429.197156	1284.56964	0.026679	1.1451E-05	3.3552	0.00144	3.3819	0.0014515	429.19861272233453	27.981	0.59334	27.829	27.649	28.243	-0.15195					36	14	3	0	0	0	0.03519	1	1630	1630		50.791	4.8831	1	749630	+		8380	28328	5484	5499	9928	9928					-0.06126276536383557
DQILWLFL	8	Unmodified	_DQILWLFL_					0	0	0			REV__MLT2C1_dup2391|chr19:43794789-43795170:-|1.1304770532666923|0.2395024624305904|2.24|522.0|5|1|sense	REV__MLT2C1_dup2391|chr19:43794789-43795170:-|1.1304770532666923|0.2395024624305904|2.24|522.0|5|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2960205078125	2	524.29731	1046.58007	-1.0531	-0.00055216	1.3826	0.00072491	0.3295	0.00017276	524.297968411829	103.06	1.2007	103.06	102.65	103.85	0					86	29	4	0	0	0	0.52467	1	13257	13257		83.287	8.2439	1	4462700	+		8381	36392	5485	5500	9929	9929					0.05864118971044263
DQINQLELL	9	Unmodified	_DQINQLELL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8197631835938	2	543.295496	1084.57644	-1.2061	-0.00065529	-1.2845	-0.00069785	-2.4906	-0.0013531	543.2947114838653	48.051	0.38792	47.898	47.669	48.057	-0.15301					19	11	2	0	0	0	0.024025	1	4820	4820		52.937	0	1	660810			8382	5759	5486	5501	9930	9930					0.03753404406506888
DQIQLMKR	8	Unmodified	_DQIQLMKR_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1;NCOA1|p.S176Efs*6|1|0.14|ENSG00000084676|chr2:24683121-24683122|-/GAAAAAAATGG|frameshift_variant	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8262329101562	2	516.286951	1030.55935	-0.74326	-0.00038374	-3.717	-0.001919	-4.4602	-0.0023028	516.2859563319234	57.001	0.61377	57.097	56.815	57.429	0.095306					24	16	2	0	0	0	0.027866	1	6264	6264		73.975	8.1716	1	168360			8383	1775	5487	5502	9931	9931					0.04529205319727225
DQIRFCEV	8	Carbamidomethyl (C)	_DQIRFC(Carbamidomethyl (C))EV_	DQIRFC(1)EV		DQIRFC(79)EV		0	1	0			REV__nc|ENSG00000130226|P42658-2|DPP6	REV__nc|ENSG00000130226|P42658-2|DPP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.8092041015625	2	533.752941	1065.49133	-1.1048	-0.00058967	-0.72188	-0.00038531	-1.8266	-0.00097498	533.7525446780488	46.113	0.22368	45.911	45.781	46.005	-0.20226					7	5	2	0	0	0	0.027866	1	4414	4414		79.451	42.292	1	123590	+		8384	23093	5488	5503	9932	9932	303				-0.038796643309296996
DQIRNKQLEA	10	Unmodified	_DQIRNKQLEA_					0	0	0			REV__ZNF699|p.K276Nfs*69|1|0.06|ENSG00000196110|chr19:9296558-9296579|TTTACATTCATAGTTTGTCTTT/-|frameshift_variant	REV__ZNF699|p.K276Nfs*69|1|0.06|ENSG00000196110|chr19:9296558-9296579|TTTACATTCATAGTTTGTCTTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	606.8333129882812	2	607.828026	1213.6415	-0.44491	-0.00027043	2.3701	0.0014406	1.9252	0.0011702	607.8290372014027	55.105	0.38375	54.954	54.782	55.166	-0.15036					21	10	3	0	0	0	0.03519	1	6011	6011		24.519	0	1	281570	+		8385	37817	5489	5504	9933	9933					0.043223989323678325
DQIRSAVLI	9	Unmodified	_DQIRSAVLI_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2801208496094	2	507.800749	1013.58694	-0.45499	-0.00023104	-3.1549	-0.001602	-3.6098	-0.0018331	507.8005871010904	48.036	0.51411	47.938	47.743	48.257	-0.097553					17	13	2	0	0	0	0.02435	1	4733	4733		51.335	22.186	1	155870			8386	1780	5490	5505	9934	9934					0.08069431851606623
DQIRTWRY	8	Unmodified	_DQIRTWRY_					0	0	0			REV__ENST00000500276.6_1_12:26109641-26111021:-|nuORF	REV__ENST00000500276.6_1_12:26109641-26111021:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.302734375	2	569.293622	1136.57269	-0.27993	-0.00015936	-1.6023	-0.00091216	-1.8822	-0.0010715	569.292616794337	49.434	0.44237	49.282	49.076	49.519	-0.15233					19	11	2	0	0	0	0.027866	1	5102	5102		19.36	0	1	605610	+		8387	33903	5491	5506	9935	9935					0.009867794233286986
DQISFVPLS	9	Unmodified	_DQISFVPLS_					0	0	0			REV__ENSG00000167595|ENST00000646935|PROSER3	REV__ENSG00000167595|ENST00000646935|PROSER3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7427062988281	2	503.266207	1004.51786	-1.2088	-0.00060836	-1.8034	-0.00090757	-3.0122	-0.0015159	503.2652662628393	24.47	1.6634	24.423	23.36	25.024	-0.047148					85	37	4	0	0	0	0.024374	1	1071	1071		40.778	11.629	1	2056000	+		8388	26158	5492	5507	9936	9936					0.01578347832048621
DQITGLQTV	9	Unmodified	_DQITGLQTV_					0	0	0		ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.79071044921875	2	487.761289	973.508025	-0.55569	-0.00027104	2.3623	0.0011522	1.8066	0.00088118	487.76186641728935	31.628	0.5212	31.628	31.428	31.949	0					24	12	3	0	0	0	0.023473	1	2169	2169		56.434	24.8	1	179710			8389	64	5493	5508	9937	9937					0.020211598266769215
DQITLAAQL	9	Unmodified	_DQITLAAQL_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7886962890625	2	486.771657	971.528761	-0.58552	-0.00028501	0.00051637	2.5135E-07	-0.585	-0.00028476	486.7716371989918	46.577	0.80053	46.629	46.474	47.275	0.051395					50	21	3	0	0	0	0.024021	1	4619	4619		58.782	14.665	1	2260200	+		8390	28792	5494	5509	9938	9938					0.04185750206318062
DQITLPTSSI	10	Unmodified	_DQITLPTSSI_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2435302734375	2	537.787504	1073.56045	-1.5629	-0.0008405	3.2004	0.0017211	1.6375	0.00088063	538.2902364881941	55.592	0.1847	55.69	55.523	55.707	0.098015					6	4	2	0	0	0	0.03519	1	6058	6058		58.23	5.2932	1	95091	+		8391	20087	5495	5510	9939	9939					0.02661698169617921
DQIVPSFY	8	Unmodified	_DQIVPSFY_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7486267089844	2	484.739825	967.465098	-0.34357	-0.00016654	4.4139	0.0021396	4.0704	0.0019731	484.7419045399002	68.863	1.2911	68.863	68.256	69.547	0					54	33	3	0	0	0	0.027866	1	8221	8221		47.916	5.4411	1	877500	+		8392	21420	5496	5511	9940	9940					-0.019936102307724468
DQKDHAVF	8	Unmodified	_DQKDHAVF_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF;ENST00000495015.5_1_9:33025323-33036160:+|nuORF	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2325439453125	2	480.232699	958.450845	0.043275	2.0782E-05	-0.10279	-4.9365E-05	-0.059519	-2.8583E-05	480.23256883906083	31.134	1.2807	30.893	30.326	31.607	-0.24109					78	31	5	0	0	0	0.5947	1	2039	2039		76.774	10.971	1	3795900			8393	1808	5497	5512	9941	9941					-0.03004262659055712
DQKDHAVF	8	Unmodified	_DQKDHAVF_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF;ENST00000495015.5_1_9:33025323-33036160:+|nuORF	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2324523925781	2	480.232699	958.450845	0.050041	2.4031E-05	-0.14224	-6.831E-05	-0.092202	-4.4278E-05	480.2325338405151	30.938	1.1903	30.786	30.384	31.574	-0.15231					70	29	4	0	0	0	0.44658	1	1990	1990		90.777	8.4716	1	3746000			8394	1808	5497	5512	9942	9942					-0.03004262659055712
DQKIIKEV	8	Unmodified	_DQKIIKEV_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2873840332031	2	486.78985	971.565146	-0.75013	-0.00036516	1.9166	0.00093297	1.1665	0.00056782	486.79058737492784	37.602	1.1274	37.393	36.999	38.126	-0.2092					95	30	5	0	0	0	0.027866	1	2971	2971		25.574	0	1	3324500	+		8395	22099	5498	5513	9943	9943					0.07822627103041668
DQKKVHDI	8	Unmodified	_DQKKVHDI_					0	0	0			REV__chr12:52469969-52470505|279|51.93|0.53|6.62|-|0|None,KRT6C|1	REV__chr12:52469969-52470505|279|51.93|0.53|6.62|-|0|None,KRT6C|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7963562011719	2	491.769448	981.524344	-0.10292	-5.0613E-05	3.179	0.0015633	3.0761	0.0015127	491.7693411839522	47.405	0.9454	47.405	46.93	47.875	0					51	27	3	0	0	0	0.027866	1	4833	4833		23.042	0	1	204050	+		8396	19358	5499	5514	9944	9944					0.03284285783422547
DQKKVSNGRHW	11	Unmodified	_DQKKVSNGRHW_					0	0	0			REV__ENST00000277900.12_1_10:111883874-111883952:+|nuORF	REV__ENST00000277900.12_1_10:111883874-111883952:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.2375793457031	3	452.237337	1353.69018	-0.14695	-6.6455E-05	0.016883	7.635E-06	-0.13006	-5.882E-05	452.2373297828072	27.24	0.98144	26.998	26.571	27.553	-0.24217					65	22	4	0	0	0	0.80896	1	1484	1484		57.149	0.5165	1	2208300	+		8397	29859	5500	5515	9945	9945					0.027483122921239556
DQKLLHQL	8	Unmodified	_DQKLLHQL_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.763916015625	2	497.787641	993.56073	-0.20753	-0.00010331	-0.32238	-0.00016048	-0.52992	-0.00026379	497.78727952429756	42.501	0.48839	42.378	42.116	42.604	-0.12299					22	12	2	0	0	0	0.027866	1	3834	3834		27.882	0	1	229140			8398	6938	5501	5516	9946	9946					0.06369162680130103
DQKLLLDLFRF	11	Unmodified	_DQKLLLDLFRF_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39;ENST00000555854.1_1_14:77906782-77910618:-|nuORF;ENST00000553576.5_1_14:77901517-77909492:-|nuORF	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.3153991699219	3	469.938005	1406.79219	0.1042	4.8968E-05	-2.7656	-0.0012997	-2.6614	-0.0012507	469.93659894056236	55.778	0.76789	55.562	55.27	56.038	-0.21607					49	20	4	0	0	0	0.024587	1	6081	6081		75.652	38.052	1	1996300			8399	6201	5502	5517	9947	9947					0.10506165591141325
DQKLLLDLFRF	11	Unmodified	_DQKLLLDLFRF_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39;ENST00000555854.1_1_14:77906782-77910618:-|nuORF;ENST00000553576.5_1_14:77901517-77909492:-|nuORF	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.3152160644531	3	469.938005	1406.79219	-1.4082	-0.00066177	-1.3527	-0.00063567	-2.7609	-0.0012974	469.93725365096805	55.795	0.77036	55.579	55.268	56.038	-0.21551					55	20	4	0	0	0	0.02476	1	6070	6070		53.597	20.557	1	1868300			8400	6201	5502	5517	9948	9948					0.10506165591141325
DQKLLLDLFRF	11	Unmodified	_DQKLLLDLFRF_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39;ENST00000555854.1_1_14:77906782-77910618:-|nuORF;ENST00000553576.5_1_14:77901517-77909492:-|nuORF	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	469.938005	1406.79219	0.24199	0.00011372	-2.0666	-0.00097119	-1.8246	-0.00085746	469.93640960651607	55.823	0.59344	55.667	55.293	55.887	-0.15601	0.081292	-0.00011558	NaN	75.652	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231940			8401	6201	5502	5517							0.10506165591141325
DQKLLLDLFRF	11	Unmodified	_DQKLLLDLFRF_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39;ENST00000555854.1_1_14:77906782-77910618:-|nuORF;ENST00000553576.5_1_14:77901517-77909492:-|nuORF	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	469.938005	1406.79219	-0.37142	-0.00017454	-1.6636	-0.00078177	-2.035	-0.00095632	469.9367412999479	55.438	0.59961	55.536	55.22	55.819	0.098015	-0.050299	0.00045265	NaN	75.652	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269860			8402	6201	5502	5517							0.10506165591141325
DQKLLLDLFRF	11	Unmodified	_DQKLLLDLFRF_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39;ENST00000555854.1_1_14:77906782-77910618:-|nuORF;ENST00000553576.5_1_14:77901517-77909492:-|nuORF	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	469.938005	1406.79219	-0.75296	-0.00035384	-1.8046	-0.00084803	-2.5575	-0.0012019	469.9370519416119	55.743	0.62061	55.586	55.312	55.933	-0.15655	-0.00021029	0.00025387	NaN	75.652	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2027300			8403	6201	5502	5517							0.10506165591141325
DQKLLRLW	8	Unmodified	_DQKLLRLW_					0	0	0			REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3056640625	2	536.319109	1070.62366	-1.0126	-0.00054306	3.704	0.0019865	2.6915	0.0014435	536.3211340468333	48.132	0.15194	47.856	47.738	47.89	-0.27598					6	3	2	0	0	0	0.027866	1	4737	4737		31.955	4.0726	1	163540	+		8404	25620	5503	5518	9949	9949					0.09117728468186215
DQKLQKEV	8	Unmodified	_DQKLQKEV_					0	0	0			REV__ENST00000399469.2_2_6:12126027-12131097:+|nuORF	REV__ENST00000399469.2_2_6:12126027-12131097:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3288879394531	2	494.277106	986.53966	0.15638	7.7294E-05	1.7539	0.00086691	1.9103	0.0009442	494.27809785467326	18.28	0.49578	18.076	17.915	18.411	-0.20371					12	9	2	0	0	0	0.027866	1	297	297		37.159	0	1	23572	+		8405	31831	5504	5519	9950	9950					0.04585152580614249
DQKRTSIR	8	Unmodified	_DQKRTSIR_					0	0	0			REV__TMEM200C|p.A12T|1|0.33|ENSG00000206432|chr18:5892030-5892030|C/T|missense_variant	REV__TMEM200C|p.A12T|1|0.33|ENSG00000206432|chr18:5892030-5892030|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.265869140625	2	502.285797	1002.55704	0.47771	0.00023994	2.6755	0.0013439	3.1532	0.0015838	502.2873610032794	81.882	0.59702	81.654	81.437	82.034	-0.2289					24	13	2	0	0	0	0.027866	1	9861	9861		37.812	3.639	1	187930	+		8406	37707	5505	5520	9951	9951					0.05586492906297735
DQKTTGLL	8	Unmodified	_DQKTTGLL_					0	0	0		ENST00000531462.5_1_11:6503495-6504159:+|nuORF	ENST00000531462.5_1_11:6503495-6504159:+|nuORF	ENST00000531462.5_1_11:6503495-6504159:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.7373046875	2	438.245275	874.475997	-0.13331	-5.8422E-05	-0.34312	-0.00015037	-0.47643	-0.00020879	438.2449538097791	61.663	0.52119	61.663	61.453	61.974	0					17	13	2	0	0	0	0.027866	1	7145	7145		20.947	6.8098	1	132270			8407	16259	5506	5521	9952	9952					0.03373792143531773
DQKVYQAVT	9	Unmodified	_DQKVYQAVT_					0	0	0		ENSG00000174136|ENST00000513185|RGMB	ENSG00000174136|ENST00000513185|RGMB	ENSG00000174136|ENST00000513185|RGMB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.3021240234375	2	526.274564	1050.53457	-1.1401	-0.0006	-1.5342	-0.00080743	-2.6743	-0.0014074	526.2738008828073	65.263	0.77678	65.263	64.944	65.721	0					55	21	3	0	0	0	0.02435	1	7742	7742		26.693	0	1	3861100			8408	8445	5507	5522	9953	9953					0.011328487179980584
DQKWILLQKIN	11	Unmodified	_DQKWILLQKIN_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MSMS	OPSCC_39_ClassI_Rep-2	2	466.9419250488281	3	466.941638	1397.80309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.69	1	100.7	100.2	101.2	0.0095444								0	0	0	1.4681	1	12848	12848		17.167	0.63689	1		+		8409	27801	5508	5523	9954	9954					0.12009567965469614
DQLAKIGLG	9	Unmodified	_DQLAKIGLG_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.78076171875	2	457.768917	913.523281	0.7453	0.00034117	-0.70269	-0.00032167	0.042605	1.9503E-05	457.7683935226864	49.242	0.79498	49.242	48.899	49.694	0					51	21	3	0	0	0	0.024263	1	5072	5072		19.997	0	1	961400	+		8410	28447	5509	5524	9955	9955					0.06306071414519465
DQLDQDIEN	9	Unmodified	_DQLDQDIEN_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3006591796875	2	545.238375	1088.4622	-1.1196	-0.00061043	-3.4976	-0.0019071	-4.6172	-0.0025175	545.2362679957158	50.301	0.6553	50.301	50.084	50.74	0					30	19	2	0	0	0	0.024409	1	5222	5222		58.23	15.834	1	273720			8411	7313	5510	5525	9956	9956					-0.07849530146245343
DQLDQDIEN	9	Unmodified	_DQLDQDIEN_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.238375	1088.4622	-0.13838	-7.5452E-05	-4.7363	-0.0025824	-4.8747	-0.0026579	545.2359074466548	50.326	0.56342	50.221	49.894	50.457	-0.10558	-0.076709	-0.00044984	NaN	41.427	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260080			8412	7313	5510	5525							-0.07849530146245343
DQLEKITDAIV	11	Unmodified	_DQLEKITDAIV_					0	0	0			REV__nc|ENSG00000114473|Q9H095-2|IQCG	REV__nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.221435546875	3	415.562604	1243.66598	2.2117	0.00091911	-0.97797	-0.00040641	1.2338	0.0005127	415.56218436236384	24.142	0.4825	23.961	23.715	24.198	-0.18089					20	10	2	0	0	0	0.02473	1	1025	1025		18.332	0	1	293790	+		8413	22125	5511	5526	9957	9957					0.053896142952226
DQLEQMILT	9	Unmodified	_DQLEQMILT_					0	0	0		nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF	nc|ENSG00000141519|Q4G0X9-2|CCDC40	nc|ENSG00000141519|Q4G0X9-2|CCDC40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8275756835938	2	545.776082	1089.53761	-1.2031	-0.0006566	-3.2719	-0.0017857	-4.4749	-0.0024423	545.7740895376364	61.867	0.55122	61.867	61.529	62.08	0					32	14	3	0	0	0	0.024511	1	7133	7133		19.104	0	1	594910			8414	5502	5512	5527	9958	9958					-0.003576442195026175
DQLEQMILT	9	Unmodified	_DQLEQMILT_					0	0	0		nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF	nc|ENSG00000141519|Q4G0X9-2|CCDC40	nc|ENSG00000141519|Q4G0X9-2|CCDC40	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.776082	1089.53761	-0.868	-0.00047373	-3.6336	-0.0019831	-4.5016	-0.0024569	545.7739513276728	62.072	0.4378	61.845	61.611	62.049	-0.22663	-0.004195	-0.00025159	NaN	30.318	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	546780			8415	5502	5512	5527							-0.003576442195026175
DQLEQMILT	9	Unmodified	_DQLEQMILT_					0	0	0		nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF	nc|ENSG00000141519|Q4G0X9-2|CCDC40	nc|ENSG00000141519|Q4G0X9-2|CCDC40	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	545.776082	1089.53761	-1.2908	-0.00070451	-3.2946	-0.0017981	-4.5854	-0.0025026	545.7740605991821	61.765	0.51017	61.835	61.55	62.06	0.070293	-0.013647	0.00011843	NaN	30.318	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	852890			8416	5502	5512	5527							-0.003576442195026175
DQLGQQRG	8	Unmodified	_DQLGQQRG_					0	0	0		chr7:97970730-97973092|178|10.24|0.0|19.97|-|2|TE_info:FLAM_C,FLAM_C_dup9538,Alu,SINE,donor,-,97973092,97973175|CCZ1P1,None|2	chr7:97970730-97973092|178|10.24|0.0|19.97|-|2|TE_info:FLAM_C,FLAM_C_dup9538,Alu,SINE,donor,-,97973092,97973175|CCZ1P1,None|2	chr7:97970730-97973092|178|10.24|0.0|19.97|-|2|TE_info:FLAM_C,FLAM_C_dup9538,Alu,SINE,donor,-,97973092,97973175|CCZ1P1,None|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26409912109375	2	451.227948	900.441343	-0.23389	-0.00010554	-3.867	-0.0017449	-4.1009	-0.0018504	451.226123422209	60.994	0.56342	61.065	60.831	61.394	0.071125					21	14	2	0	0	0	0.027866	1	6996	6996		49.442	17.487	1	159810			8417	428	5513	5528	9959	9959					-0.01286030944572758
DQLGSERGH	9	Unmodified	_DQLGSERGH_					0	0	0		X9_LINE_dup501|chr12:123390764-123390851:+|1.6249029807997828|0.3437392533533853|2.24|520.0|7|2|anti-sense	X9_LINE_dup501|chr12:123390764-123390851:+|1.6249029807997828|0.3437392533533853|2.24|520.0|7|2|anti-sense	X9_LINE_dup501|chr12:123390764-123390851:+|1.6249029807997828|0.3437392533533853|2.24|520.0|7|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.8316955566406	2	499.736137	997.457721	-0.89594	-0.00044773	3.2277	0.001613	2.3318	0.0011653	499.7381892431018	44.347	0.40219	44.243	44.064	44.467	-0.10468					15	10	2	0	0	0	0.024412	1	4144	4144		24.203	2.2429	1	164400			8418	38159	5514	5529	9960	9960					-0.041109497784759697
DQLGSPLDPP	10	Unmodified	_DQLGSPLDPP_					0	0	0			REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF	REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3118896484375	2	519.758746	1037.50294	-0.48174	-0.00025039	-4.4749	-0.0023259	-4.9566	-0.0025762	519.7564160399887	52.96	0.5392	53.056	52.868	53.407	0.095669					19	14	2	0	0	0	0.03519	1	5663	5663		41.427	2.1738	1	340470	+		8419	33887	5515	5530	9961	9961					-0.014311440359733751
DQLIDRHR	8	Unmodified	_DQLIDRHR_					0	0	0			REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF	REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.268310546875	2	526.783422	1051.55229	0.28505	0.00015016	3.1259	0.0016467	3.411	0.0017968	526.7845400250591	52.629	0.84332	52.721	52.28	53.123	0.091938					33	21	2	0	0	0	0.027866	1	5624	5624		53.351	12.573	1	211990	+		8420	21749	5516	5531	9962	9962					0.028576087635201475
DQLIHGEKF	9	Unmodified	_DQLIHGEKF_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3272705078125	2	543.782556	1085.55056	1.1973	0.00065106	1.9165	0.0010421	3.1138	0.0016932	543.7829994600751	23.704	0.37617	23.513	23.284	23.66	-0.19117					12	8	2	0	0	0	0.024541	1	919	919		17.468	0	1	33366	+		8421	23605	5517	5532	9963	9963					0.01120554954900399
DQLIIDGLL	9	Unmodified	_DQLIIDGLL_					0	0	0		ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	ENSG00000105229|ENST00000262971|PIAS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.8267822265625	2	500.289682	998.564812	0.40721	0.00020372	-2.9544	-0.0014781	-2.5472	-0.0012743	500.28826496722473	21.757	0.47762	21.58	21.397	21.875	-0.17721					14	9	2	0	0	0	0.024374	1	720	720		58.782	23.164	1	88448			8422	2649	5518	5533	9964	9964					0.06547207383187015
DQLIQMLNF	9	Unmodified	_DQLIQMLNF_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2442626953125	2	561.286617	1120.55868	-0.14814	-8.3151E-05	-2.8498	-0.0015996	-2.998	-0.0016827	561.2849793033463	76.487	0.86382	76.219	75.817	76.681	-0.26806					45	20	3	0	0	0	0.024418	1	9029	9029		45.972	3.108	1	793370	+		8423	22475	5519	5534	9965	9965					0.003223658800152407
DQLIRILN	8	Unmodified	_DQLIRILN_					0	0	0			REV__ENSG00000161896|ENST00000293756|IP6K3	REV__ENSG00000161896|ENST00000293756|IP6K3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7771301269531	2	492.795466	983.57638	-0.39075	-0.00019256	-0.48275	-0.0002379	-0.87351	-0.00043046	492.79459428277687	46.889	0.75727	46.948	46.349	47.106	0.059097					25	20	2	0	0	0	0.027866	1	4531	4531		24.203	0	1	218720	+		8424	25404	5520	5535	9966	9966					0.08393449197171776
DQLKLALLV	9	Unmodified	_DQLKLALLV_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1;REV__ENSG00000204010|ENST00000371809|IFIT1B	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81085205078125	2	506.823692	1011.63283	-0.47898	-0.00024276	-2.4787	-0.0012563	-2.9577	-0.001499	506.8235420291485	57.033	0.667	57.033	56.678	57.345	0					26	18	2	0	0	0	0.024261	1	6335	6335		64.207	0	1	180510	+		8425	27791;28559	5521	5536	9967	9967					0.1274807703383658
DQLKLRDF	8	Unmodified	_DQLKLRDF_					0	0	0			REV__ENSG00000155858|ENST00000286307|LSM11	REV__ENSG00000155858|ENST00000286307|LSM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8258666992188	2	517.785099	1033.55564	-0.63145	-0.00032695	-0.16885	-8.7429E-05	-0.8003	-0.00041438	517.785005059647	56.537	0.50077	56.537	56.277	56.778	0					36	13	4	0	0	0	0.027866	1	6345	6345		65.803	4.8312	1	672010	+		8426	25034	5522	5537	9968	9968					0.040208588175119075
DQLKQLFF	8	Unmodified	_DQLKQLFF_					0	0	0			REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3084716796875	2	519.784567	1037.55458	-0.23837	-0.0001239	-2.8995	-0.0015071	-3.1379	-0.001631	519.7828336799566	49.496	0.70448	49.344	49.113	49.817	-0.1512					35	18	3	0	0	0	0.027866	1	5071	5071		28.254	0	1	298520	+		8427	30725	5523	5538	9969	9969					0.037306444486148393
DQLKQVAEL	9	Unmodified	_DQLKQVAEL_					0	0	0			REV__nc|ENSG00000119715|O95718-1|ESRRB	REV__nc|ENSG00000119715|O95718-1|ESRRB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7652587890625	2	522.290214	1042.56587	0.27616	0.00014424	-0.71203	-0.00037189	-0.43587	-0.00022765	522.2906407902781	99.386	1.137	99.382	98.68	99.817	-0.0038757					33	25	2	0	0	0	0.024017	1	12647	12647		65.465	10.743	1	48479	+		8428	36607	5524	5539	9970	9970					0.04629421752088092
DQLKQVAEL	9	Unmodified	_DQLKQVAEL_					0	0	0			REV__nc|ENSG00000119715|O95718-1|ESRRB	REV__nc|ENSG00000119715|O95718-1|ESRRB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.290214	1042.56587	0.40606	0.00021208	-3.1805	-0.0016612	-2.7745	-0.0014491	522.2906260911782	99.505	0.74678	99.37	98.973	99.719	-0.13526	0.037626	-0.0010968	NaN	65.465	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59282	+		8429	36607	5524	5539							0.04629421752088092
DQLKQVAEL	9	Unmodified	_DQLKQVAEL_					0	0	0			REV__nc|ENSG00000119715|O95718-1|ESRRB	REV__nc|ENSG00000119715|O95718-1|ESRRB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.290214	1042.56587	1.0964	0.00057263	-4.9542	-0.0025875	-3.8579	-0.0020149	522.7892241863472	99.37	1.0062	99.245	98.673	99.679	-0.12458	-0.087102	-0.0029495	NaN	65.465	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63530	+		8430	36607	5524	5539							0.04629421752088092
DQLLGPHSV	9	Unmodified	_DQLLGPHSV_					0	0	0			REV__ENSG00000143217|ENST00000368012|NECTIN4	REV__ENSG00000143217|ENST00000368012|NECTIN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.27484130859375	2	483.256174	964.497795	0.099904	4.8279E-05	4.2025	0.0020309	4.3024	0.0020792	483.2582124030752	30.764	1.3001	30.612	29.707	31.007	-0.15189					45	30	2	0	0	0	0.024539	1	1945	1945		14.865	0	1	258470	+		8431	24212	5525	5540	9971	9971					0.01412596892100737
DQLLGTRSV	9	Unmodified	_DQLLGTRSV_					0	0	0		ENST00000550406.1_1_17:40282423-40282585:-|nuORF	ENST00000550406.1_1_17:40282423-40282585:-|nuORF	ENST00000550406.1_1_17:40282423-40282585:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7744445800781	2	494.774731	987.534909	-1.1316	-0.0005599	1.3059	0.00064612	0.17426	8.6219E-05	494.7753427019882	49.521	0.4522	49.595	49.316	49.768	0.074196					40	11	5	0	0	0	0.42604	2	5050	5050;5063		64.207	3.2353	1	5860400			8432	16580	5526	5541	9972;9973	9972					0.04064268437866758
DQLLINLNI	9	Unmodified	_DQLLINLNI_					0	0	0			REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2747192382812	2	528.308406	1054.60226	0.18677	9.8673E-05	-2.2059	-0.0011654	-2.0192	-0.0010667	528.3073156987701	47.252	0.56059	47.099	46.776	47.336	-0.15301					28	14	3	0	0	0	0.024021	1	4675	4675		49.442	7.0454	1	795260	+		8433	33205	5527	5542	9974	9974					0.07714298648784279
DQLLINLNI	9	Unmodified	_DQLLINLNI_					0	0	0			REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.308406	1054.60226	-0.32907	-0.00017385	-9.0145	-0.0047624	-9.3436	-0.0049363	528.3031333369597	47.308	0.478	47.212	47.008	47.486	-0.096649	0.027979	-0.0056375	NaN	58.782	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147060	+		8434	33205	5527	5542							0.07714298648784279
DQLLINLNI	9	Unmodified	_DQLLINLNI_					0	0	0			REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.308406	1054.60226	-0.24709	-0.00013054	-9.3183	-0.0049229	-9.5654	-0.0050535	528.3032275734796	47.651	0.47993	47.382	47.087	47.567	-0.26939	0.19827	-0.0059585	NaN	58.782	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143010	+		8435	33205	5527	5542							0.07714298648784279
DQLLINLNI	9	Unmodified	_DQLLINLNI_					0	0	0			REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	REV__ENST00000472424.1_1_1:82447552-82452975:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.308406	1054.60226	0.029462	1.5565E-05	-9.5333	-0.0050365	-9.5039	-0.005021	528.3027440151766	47.477	0.66918	47.288	47.002	47.671	-0.18838	0.10452	-0.0061857	NaN	58.782	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130410	+		8436	33205	5527	5542							0.07714298648784279
DQLLLRAF	8	Unmodified	_DQLLLRAF_					0	0	0			REV__UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	REV__UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2423400878906	2	488.284734	974.554916	-0.29678	-0.00014491	-0.037608	-1.8364E-05	-0.33439	-0.00016328	488.28482288255066	61.208	0.66785	60.994	60.643	61.311	-0.2134					36	17	4	0	0	0	0.027866	1	7034	7034		37.159	7.3176	1	527060	+		8437	21854	5528	5543	9975	9975					0.0666206416847217
DQLLRLNES	9	Unmodified	_DQLLRLNES_					0	0	0			REV__SPEG|p.R1113L|1|0.24|ENSG00000072195|chr2:219468895-219468895|G/T|missense_variant	REV__SPEG|p.R1113L|1|0.24|ENSG00000072195|chr2:219468895-219468895|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.281982421875	2	544.290745	1086.56694	0.43452	0.00023651	-1.8873	-0.0010272	-1.4528	-0.00079074	544.2905194677453	51.248	0.54465	51.067	50.87	51.415	-0.18071					24	13	2	0	0	0	0.024484	1	5283	5283		23.523	0	1	4563600	+		8438	37573	5529	5544	9976	9976					0.027116361209891693
DQLLRPAN	8	Unmodified	_DQLLRPAN_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7793273925781	2	463.756341	925.498129	-0.010692	-4.9587E-06	-4.4029	-0.0020419	-4.4136	-0.0020468	463.75432813600946	67.574	1.5503	67.574	67.01	68.56	0					54	39	2	0	0	0	0.027866	1	8104	8104		19.997	0	1	257550	+		8439	28192	5530	5545	9977	9977					0.03240016611937335
DQLMKLAF	8	Unmodified	_DQLMKLAF_					0	0	0			REV__ENSG00000162889|ENST00000367103|MAPKAPK2	REV__ENSG00000162889|ENST00000367103|MAPKAPK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2494201660156	2	483.259871	964.505189	-0.61532	-0.00029736	-2.72	-0.0013145	-3.3354	-0.0016118	483.2585594151648	84.753	1.2966	84.68	83.874	85.171	-0.072769					36	30	2	0	0	0	0.027866	1	10470	10470		20.482	4.0087	1	79869	+		8440	25505	5531	5546	9978	9978					0.021516131681551087
DQLQKLDDV	9	Unmodified	_DQLQKLDDV_					0	0	0			REV__ENST00000474352.5_1_1:151337855-151338307:-|nuORF	REV__ENST00000474352.5_1_1:151337855-151338307:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3054809570312	2	537.277303	1072.54005	-0.47157	-0.00025336	-2.9701	-0.0015958	-3.4417	-0.0018491	537.2760437456784	49.005	0.278	49.005	48.761	49.039	0					12	7	2	0	0	0	0.024466	1	5006	5006		39.253	3.6345	1	357750	+		8441	33272	5532	5547	9979	9979					0.006685275097879639
DQLQNEGHM	9	Unmodified	_DQLQNEGHM_					0	0	0			REV__ENST00000451057.1_1_7:156990296-156991186:-|nuORF	REV__ENST00000451057.1_1_7:156990296-156991186:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.305419921875	2	536.22983	1070.44511	-0.33012	-0.00017702	1.9236	0.0010315	1.5935	0.00085447	536.7332806918607	47.993	0.26584	47.806	47.712	47.978	-0.18684					9	6	2	0	0	0	0.024466	1	4714	4714		39.253	11.371	1	64412	+		8442	32717	5533	5548	9980	9980					-0.08729729233027683
DQLQRHATAL	10	Unmodified	_DQLQRHATAL_					0	0	0			REV__ENSG00000179921|ENST00000519574|GPBAR1	REV__ENSG00000179921|ENST00000519574|GPBAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2539672851562	2	576.809636	1151.60472	-0.97352	-0.00056154	3.989	0.0023009	3.0155	0.0017394	576.81181285429	46.277	0.58774	46.075	45.819	46.406	-0.20226					24	15	2	0	0	0	0.03519	1	4457	4457		49.536	22.843	1	456420	+		8443	27303	5534	5549	9981	9981					0.03498147106461147
DQLQRQII	8	Unmodified	_DQLQRQII_					0	0	0		TTC39C|p.R128Q|1|0.14|ENSG00000168234|chr18:24069194-24069194|G/A|missense_variant	TTC39C|p.R128Q|1|0.14|ENSG00000168234|chr18:24069194-24069194|G/A|missense_variant	TTC39C|p.R128Q|1|0.14|ENSG00000168234|chr18:24069194-24069194|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81085205078125	2	507.290548	1012.56654	-0.5034	-0.00025537	-0.80828	-0.00041003	-1.3117	-0.0006654	507.29045206560505	56.793	0.13139	56.793	56.678	56.809	0					5	3	2	0	0	0	0.027866	1	6335	6335		62.107	3.8775	1	94772			8444	38115	5535	5550	9982	9982					0.060762611917994036
DQLRTQVVR	9	Unmodified	_DQLRTQVVR_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.738525390625	2	557.820004	1113.62546	-0.17581	-9.8071E-05	3.3628	0.0018758	3.187	0.0017778	557.8217698656437	60.964	0.44877	60.964	60.768	61.216	0					27	11	3	0	0	0	0.024374	1	7010	7010		32.812	0	1	310940			8445	3965	5536	5551	9983	9983					0.07318737486116333
DQLSCVRMPM	10	2 Oxidation (M)	_DQLSCVRM(Oxidation (M))PM(Oxidation (M))_		DQLSCVRM(1)PM(1)		DQLSCVRM(69)PM(69)	0	0	2		ENST00000609438.1_1_4:90171068-90171173:-|nuORF	ENST00000609438.1_1_4:90171068-90171173:-|nuORF	ENST00000609438.1_1_4:90171068-90171173:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.5111999511719	3	404.512093	1210.51445	0.57959	0.00023445	-3.2232	-0.0013038	-2.6436	-0.0010694	404.5108205149643	32.083	1.0077	31.846	31.489	32.497	-0.23667					68	23	4	0	0	0	0.67616	1	2200	2200		68.846	10.217	1	5886800			8446	17606	5537	5552	9984	9984		557;558			-0.0823872960013432
DQLSQSIVM	9	Unmodified	_DQLSQSIVM_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7741394042969	2	510.755149	1019.49575	-0.87248	-0.00044562	-3.3222	-0.0016968	-4.1947	-0.0021425	510.75316470936957	44.245	0.49758	44.14	43.889	44.387	-0.10468					23	13	2	0	0	0	0.024457	1	4136	4136		37.159	8.0096	1	358360			8447	2338	5538	5553	9985	9985					-0.013221999080201385
DQLSQSIVM	9	Unmodified	_DQLSQSIVM_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.7744140625	2	510.755149	1019.49575	-1.0461	-0.00053429	-2.9419	-0.0015026	-3.988	-0.0020369	510.753493047	44.401	0.50617	44.157	44.01	44.516	-0.2444					20	13	2	0	0	0	0.023007	1	4152	4152		66.429	11.653	1	420790			8448	2338	5538	5553	9986	9986					-0.013221999080201385
DQLSRVAVP	9	Unmodified	_DQLSRVAVP_					0	0	0			REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.77752685546875	2	492.777274	983.539994	0.27428	0.00013516	-0.36585	-0.00018028	-0.09157	-4.5124E-05	492.7769502575609	46.451	0.87701	46.451	46.126	47.003	0					66	23	4	0	0	0	0.42604	1	4600	4600		64.207	14.183	1	5183100	+		8449	28552	5539	5554	9987	9987					0.04756572300470907
DQLSTITKN	9	Unmodified	_DQLSTITKN_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2894592285156	2	510.272021	1018.52949	-0.79239	-0.00040433	-4.4853	-0.0022887	-5.2777	-0.0026931	510.2698337628148	48.092	1.0132	47.816	47.492	48.505	-0.27598					40	27	3	0	0	0	0.024438	1	4723	4723		29.17	10.067	1	406450			8450	8590	5540	5555	9988	9988					0.02096544855362481
DQLTNILAPM	10	Unmodified	_DQLTNILAPM_					0	0	0		ENSG00000138449|ENST00000261024|SLC40A1	ENSG00000138449|ENST00000261024|SLC40A1	ENSG00000138449|ENST00000261024|SLC40A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8440551757812	2	558.291899	1114.56925	-0.25243	-0.00014093	-3.9795	-0.0022217	-4.2319	-0.0023626	558.7921457635078	54.434	0.18062	54.283	54.229	54.409	-0.15036					5	4	2	0	0	0	0.03519	1	5933	5933		24.519	0	1	58209			8451	5245	5541	5556	9989	9989					0.016543485344527653
DQLTSHARL	9	Unmodified	_DQLTSHARL_					0	0	0			REV__ENSG00000130309|ENST00000252599|COLGALT1	REV__ENSG00000130309|ENST00000252599|COLGALT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2617797851562	2	520.777805	1039.54106	-1.1691	-0.00060885	-0.7469	-0.00038897	-1.916	-0.00099781	520.7773591437852	22.533	0.71182	22.607	22.172	22.884	0.073954					19	12	3	0	0	0	0.024477	1	760	760		14.865	0	1	58786	+		8452	23104	5542	5557	9990	9990					0.022867866693559336
DQLVNFPFGDD	11	Unmodified	_DQLVNFPFGDD_					0	0	0			REV__ENSG00000185033|ENST00000411539|SEMA4B	REV__ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.7849731445312	2	633.785492	1265.55643	-0.93114	-0.00059015	0.034502	2.1867E-05	-0.89664	-0.00056828	633.7854170618903	42.827	0.71785	42.714	42.464	43.182	-0.11253					48	18	4	0	0	0	0.97559	1	3893	3893		40.058	2.2467	1	2647300	+		8453	27725	5543	5558	9991	9991					-0.0657239132410723
DQLVSEALN	9	Unmodified	_DQLVSEALN_					0	0	0			REV__ENSG00000153820|ENST00000392056|SPHKAP	REV__ENSG00000153820|ENST00000392056|SPHKAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2665710449219	2	494.750921	987.48729	-0.13436	-6.6475E-05	-0.31705	-0.00015686	-0.45141	-0.00022334	494.75138499459894	48.58	0.51878	48.58	48.311	48.83	0					18	14	2	0	0	0	0.024374	1	4964	4964		40.778	5.1599	1	100240	+		8454	24912	5544	5559	9992	9992					-0.006954305530143756
DQLWPAKV	8	Unmodified	_DQLWPAKV_					0	0	0		ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2898254394531	2	478.763635	955.512717	-0.15931	-7.6274E-05	1.0807	0.00051742	0.92143	0.00044115	478.76356671301755	53.035	0.87881	53.131	52.714	53.592	0.095669					49	23	3	0	0	0	0.027866	1	5587	5587		21.96	14.767	1	2048000			8455	6603	5545	5560	9993	9993					0.03318088760079263
DQLYELLN	8	Unmodified	_DQLYELLN_					0	0	0		nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7408447265625	2	504.25584	1006.49713	-0.66804	-0.00033686	-1.8552	-0.00093548	-2.5232	-0.0012723	504.7563306354778	24.689	0.53472	24.689	24.429	24.964	0					17	11	3	0	0	0	0.027866	1	1087	1087		13.454	0	1	47549			8456	6315	5546	5561	9994	9994					-0.005862425476152566
DQMQVLNP	8	Unmodified	_DQMQVLNP_					0	0	0		nc|ENSG00000163406|Q16348-2|SLC15A2;ENSG00000163406|ENST00000489711|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.8084716796875	2	472.728935	943.443317	0.7668	0.00036249	2.586	0.0012225	3.3528	0.001585	472.7297027149242	40.783	0.10747	40.783	40.692	40.8	0					4	2	2	0	0	0	0.027866	1	3604	3604		38.806	18.809	1	43919			8457	7074	5547	5562	9995	9995					-0.030667382509818708
DQMRRDGF	8	Unmodified	_DQMRRDGF_					0	0	0		nc|ENSG00000172752|A8TX70|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.8338317871094	2	512.735083	1023.45561	-0.25625	-0.00013139	-2.5024	-0.0012831	-2.7587	-0.0014145	512.7329748044316	73.012	0.38757	72.735	72.497	72.884	-0.2769					11	8	2	0	0	0	0.027866	1	8537	8537		35.618	0	1	89869			8458	8301	5548	5563	9996	9996					-0.05517701787925944
DQMWYEDAL	9	Unmodified	_DQMWYEDAL_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.7540893554688	2	585.742239	1169.46993	-0.77783	-0.00045561	4.4601	0.0026125	3.6823	0.0021569	585.7446857962866	70.232	0.86504	69.982	69.317	70.182	-0.25063					34	20	3	0	0	0	0.024457	1	8189	8189		29.15	0	1	625250			8459	2272	5549	5564	9997	9997					-0.10803094150310244
DQMWYEDAL	9	Unmodified	_DQMWYEDAL_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.7538452148438	2	585.742239	1169.46993	-0.36817	-0.00021565	3.966	0.0023231	3.5979	0.0021074	585.7443174438167	70.146	0.69184	69.932	69.482	70.174	-0.21425					26	16	2	0	0	0	0.024457	1	8185	8185		29.15	0	1	606870			8460	2272	5549	5564	9998	9998					-0.10803094150310244
DQNLLEGLLG	10	Unmodified	_DQNLLEGLLG_					0	0	0		ENST00000609803.2_1_12:46120923-46121040:-|nuORF	ENST00000609803.2_1_12:46120923-46121040:-|nuORF	ENST00000609803.2_1_12:46120923-46121040:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2769165039062	2	536.287671	1070.56079	-0.98849	-0.00053012	-4.4771	-0.002401	-5.4656	-0.0029312	536.2850652808916	44.189	0.16892	44.226	44.072	44.241	0.0369					6	4	2	0	0	0	0.03519	1	4120	4120		60.118	0	1	120500			8461	17612	5550	5565	9999	9999					0.028331178894632103
DQNLQQCLN	9	Unmodified	_DQNLQQCLN_					0	0	0			REV__ENST00000509842.5_3_3:141100305-141105758:+|nuORF	REV__ENST00000509842.5_3_3:141100305-141105758:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2442626953125	2	538.24548	1074.47641	0.11217	6.0375E-05	-2.5444	-0.0013695	-2.4322	-0.0013091	538.2448553985078	55.662	1.4268	55.662	55.319	56.745	0					91	39	6	0	0	0	0.32811	1	6164	6164		71.877	2.2498	1	12697000	+		8462	34090	5551	5566	10000	10000					-0.05785156198930963
DQNRAPSLTL	10	Unmodified	_DQNRAPSLTL_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.7957153320312	2	557.796195	1113.57784	-1.1288	-0.00062962	0.85905	0.00047917	-0.26971	-0.00015044	557.7967068918219	39.385	1.3771	39.287	38.949	40.326	-0.098755					102	37	5	0	0	0	0.59716	1	3401	3401		77.318	4.4383	1	11249000			8463	7724	5552	5567	10001	10001					0.02559038495292043
DQNRSWHE	8	Unmodified	_DQNRSWHE_					0	0	0			REV__nc|ENSG00000198959|P21980-3|TGM2	REV__nc|ENSG00000198959|P21980-3|TGM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2931518554688	2	536.233761	1070.45297	-1.1289	-0.00060536	0.025615	1.3736E-05	-1.1033	-0.00059163	536.2338159809871	44.822	0.44884	44.822	44.485	44.934	0					16	12	2	0	0	0	0.027866	1	4261	4261		23.042	0	1	97196	+		8464	33276	5553	5568	10002	10002					-0.07943833921240184
DQPAAVRKT	9	Unmodified	_DQPAAVRKT_					0	0	0			REV__ENST00000523259.5_1_5:139931458-139936810:-|nuORF	REV__ENST00000523259.5_1_5:139931458-139936810:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7792663574219	2	493.274898	984.535243	-0.77081	-0.00038022	-3.7486	-0.0018491	-4.5194	-0.0022293	493.27296216720157	81.269	1.1274	81.138	80.577	81.705	-0.13075					40	27	2	0	0	0	0.024427	1	10139	10139		26.693	0	1	350980	+		8465	28744	5554	5569	10003	10003					0.04235688157700679
DQPCATGFY	9	Unmodified	_DQPCATGFY_					0	0	0		SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant;ENSG00000244486|ENST00000622235|SCARF2;nc|ENSG00000244486|Q96GP6|SCARF2	SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.794677734375	2	501.205292	1000.39603	-0.38075	-0.00019084	3.5433	0.0017759	3.1625	0.0015851	501.2069722941959	52.749	0.48619	52.559	52.267	52.754	-0.18982					18	11	2	0	0	0	0.024487	1	5464	5464		17.365	0	1	199810			8466	10823	5555	5570	10004	10004					-0.10415017521972914
DQPCPRGWW	9	Unmodified	_DQPCPRGWW_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.3031005859375	2	572.753276	1143.492	0.34083	0.00019521	1.209	0.00069243	1.5498	0.00088765	572.7538023892504	58.629	0.29825	58.442	58.386	58.684	-0.18705					9	7	2	0	0	0	0.024436	1	6632	6632		30.504	4.9296	1	51847			8467	247	5556	5571	10005	10005					-0.0740082489123779
DQPIHLYSRG	10	Unmodified	_DQPIHLYSRG_					0	0	0			REV__ENST00000606893.5_1_6:110533295-110551331:+|nuORF	REV__ENST00000606893.5_1_6:110533295-110551331:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.3076171875	2	593.304187	1184.59382	-0.15806	-9.3775E-05	3.2738	0.0019423	3.1157	0.0018486	593.3060345541127	63.454	1.3539	63.196	62.835	64.188	-0.25824					92	34	4	0	0	0	0.78438	1	7134	7134		61.691	10.499	1	6804400	+		8468	26259	5557	5572	10006	10006					0.008907447321689688
DQPLPQLLPI	10	Unmodified	_DQPLPQLLPI_					0	0	0		ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.4286499023438	2	567.331882	1132.64921	-0.25341	-0.00014377	-3.2747	-0.0018579	-3.5282	-0.0020016	567.3299706706163	102.52	0.73519	102.52	102.24	102.97	0.0073471					42	17	4	0	0	0	0.03519	1	13068	13068		67.494	12.717	1	1033600			8469	13665	5558	5573	10007	10007					0.0881915819995811
DQPLPQLLPI	10	Unmodified	_DQPLPQLLPI_					0	0	0		ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297119140625	2	567.331882	1132.64921	0.23301	0.0001322	-3.6742	-0.0020845	-3.4412	-0.0019523	567.3296771474468	102.77	0.5423	102.6	102.33	102.87	-0.17034					35	12	4	0	0	0	1.0393	1	12749	12749		40.778	1.5253	1	797050			8470	13665	5558	5573	10008	10008					0.0881915819995811
DQPRIEKAL	9	Unmodified	_DQPRIEKAL_					0	0	0			REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1	REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7850952148438	2	535.303655	1068.59276	0.22374	0.00011977	-0.23849	-0.00012766	-0.014748	-7.8949E-06	535.3031811545478	55.64	0.39518	55.64	55.427	55.822	0					19	10	2	0	0	0	0.024495	1	6161	6161		19.997	0	1	479320	+		8471	20379	5559	5574	10009	10009					0.061205303632732466
DQPRRLFFR	9	Unmodified	_DQPRRLFFR_					0	0	0			REV__CON__P17697	REV__CON__P17697	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.8949279785156	3	412.231634	1233.67307	-0.33489	-0.00013805	-2.5002	-0.0010306	-2.8351	-0.0011687	412.22896327018225	30.676	0.34042	30.431	30.284	30.624	-0.24415					11	7	2	0	0	0	0.024511	1	1963	1963		8.6937	0	1	25004	+	+	8472	19555	5560	5575	10010	10010					0.06558436476962015
DQPSDPLNSP	10	Unmodified	_DQPSDPLNSP_					0	0	0		nc|ENSG00000125740|P53539-9|FOSB;nc|ENSG00000125740|P53539-8|FOSB;ENST00000587358.1_1_19:45974364-45976267:+|nuORF;nc|ENSG00000125740|P53539-7|FOSB;nc|ENSG00000125740|P53539-6|FOSB;nc|ENSG00000125740|P53539-5|FOSB;nc|ENSG00000125740|P53539-10|FOSB;nc|ENSG00000125740|P53539-4|FOSB;nc|ENSG00000125740|P53539-3|FOSB;nc|ENSG00000125740|P53539-2|FOSB;ENSG00000125740|ENST00000353609|FOSB	nc|ENSG00000125740|P53539-9|FOSB	nc|ENSG00000125740|P53539-9|FOSB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2464599609375	2	535.24346	1068.47237	-0.6357	-0.00034025	-1.7504	-0.00093692	-2.3861	-0.0012772	535.2419906142414	34.439	0.46548	34.434	34.225	34.691	-0.0045624					18	11	2	0	0	0	0.03519	1	2559	2559		51.528	19.998	1	215320			8473	4133	5561	5576	10011	10011					-0.05912922420998257
DQPSPDYFTCL	11	Unmodified	_DQPSPDYFTCL_					0	0	0			REV__ENST00000367995.3_1_1:161165886-161166201:-|nuORF	REV__ENST00000367995.3_1_1:161165886-161166201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.1900939941406	3	429.185028	1284.53325	2.1361	0.00091677	0.94813	0.00040692	3.0842	0.0013237	429.1852845402741	24.821	0.73714	24.646	24.335	25.072	-0.17494					39	16	3	0	0	0	0.024739	1	1117	1117		28.577	6.7963	1	474040	+		8474	31037	5562	5577	10012	10012					-0.0976315343305032
DQPVHLTFT	9	Unmodified	_DQPVHLTFT_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2422485351562	2	529.269281	1056.52401	-0.039506	-2.0909E-05	4.3723	0.0023141	4.3328	0.0022932	529.7718898370579	43.628	0.76318	43.659	43.229	43.992	0.030823					46	20	4	0	0	0	0.024447	1	4085	4085		32.812	4.9302	1	234220	+		8475	23867	5563	5578	10013	10013					-0.0019913393641672883
DQPVKWND	8	Unmodified	_DQPVKWND_					0	0	0			REV__ENSG00000104375|ENST00000419617|STK3	REV__ENSG00000104375|ENST00000419617|STK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3128356933594	2	501.237981	1000.46141	-0.48758	-0.00024439	3.5219	0.0017653	3.0343	0.0015209	501.23945030328235	75.989	0.40578	75.745	75.581	75.987	-0.24455					17	10	2	0	0	0	0.027866	1	9345	9345		39.253	3.6345	1	155110	+		8476	21442	5564	5579	10014	10014					-0.03880280004625547
DQPVQELNE	9	Unmodified	_DQPVQELNE_					0	0	0			REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3067626953125	2	536.251286	1070.48802	-1.3373	-0.00071712	-0.84411	-0.00045266	-2.1814	-0.0011698	536.2505764781038	47.727	0.28525	47.786	47.677	47.963	0.059097					14	8	3	0	0	0	0.0245	1	4756	4756		44.377	12.422	1	949030	+		8477	23332	5565	5580	10015	10015					-0.04440635903961265
DQQAKIPL	8	Unmodified	_DQQAKIPL_					0	0	0		nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1;RSF1|p.K1002Nfs*18|1|0.29|ENSG00000048649|chr11:77683769-77683769|T/-|frameshift_variant	nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2950439453125	2	456.761092	911.507631	-0.48474	-0.00022141	0.5444	0.00024866	0.059665	2.7252E-05	456.76127987739187	55.92	0.53871	56.018	55.744	56.283	0.097897					31	14	3	0	0	0	0.027866	1	6139	6139		65.803	2.4969	1	187860			8478	1118	5566	5581	10016	10016					0.04833784897471105
DQQCPLLW	8	Unmodified	_DQQCPLLW_					0	0	0			REV__ENST00000361069.8_1_9:133967170-133967356:+|nuORF	REV__ENST00000361069.8_1_9:133967170-133967356:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7947082519531	2	501.739302	1001.46405	-0.46715	-0.00023439	1.0898	0.00054678	0.62262	0.00031239	501.7400933906434	52.499	0.1569	52.38	52.243	52.4	-0.11875					5	3	2	0	0	0	0.027866	1	5458	5458		17.365	0	1	26013	+		8479	30930	5567	5582	10017	10017					-0.036621478713072975
DQQHKLSE	8	Unmodified	_DQQHKLSE_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3288879394531	2	492.740888	983.467223	0.21929	0.00010806	0.28288	0.00013939	0.50218	0.00024744	492.74105641325747	18.391	0.69372	18.188	17.717	18.411	-0.20371					19	13	2	0	0	0	0.027866	1	297	297		45.952	0	1	72507	+		8480	24351	5568	5583	10018	10018					-0.025171814929422
DQQPQQQLEL	10	Unmodified	_DQQPQQQLEL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	613.8048095703125	2	613.804217	1225.59388	-1.658	-0.0010177	4.2917	0.0026343	2.6338	0.0016166	613.8068870254968	62.374	0.43961	62.374	62.25	62.69	0					17	13	2	0	0	0	0.53069	1	7262	7262		54.722	7.065	1	1411500	+		8481	28935	5569	5584	10019	10019					-0.00989300058495246
DQQPQQQLEL	10	Unmodified	_DQQPQQQLEL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	613.804217	1225.59388	-1.658	-0.0010177	4.2917	0.0026343	2.6338	0.0016166	613.8068870254968	62.374	0.43961	62.374	62.25	62.69	0	0.018696	0.00079275	NaN	54.722	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1411500	+		8482	28935	5569	5584							-0.00989300058495246
DQQPQQQLEL	10	Unmodified	_DQQPQQQLEL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	613.804217	1225.59388	-1.8299	-0.0011232	3.9882	0.002448	2.1584	0.0013248	613.8066168801313	62.364	0.48652	62.426	62.201	62.688	0.062767	0.071355	0.00042017	NaN	54.722	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958480	+		8483	28935	5569	5584							-0.00989300058495246
DQQQRAQQLI	10	Unmodified	_DQQQRAQQLI_					0	0	0			REV__BYSL|p.E67D|1|0.33|ENSG00000112578|chr6:41921763-41921763|G/C|missense_variant	REV__BYSL|p.E67D|1|0.33|ENSG00000112578|chr6:41921763-41921763|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.8864440917969	3	409.886192	1226.63675	0.11489	4.709E-05	-0.13974	-5.7276E-05	-0.02485	-1.0186E-05	409.8861759658138	34.5	1.4092	34.55	34.213	35.623	0.050255					110	36	5	0	0	0	1.0074	1	2503	2503		45.022	2.1579	1	10789000	+		8484	19225	5570	5585	10020	10020					0.03249514789604291
DQRCRALL	8	Unmodified	_DQRCRALL_					0	0	0		ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant;ENSG00000073331|ENST00000650871|ALPK1;ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant;ENST00000509688.5_1_4:113236981-113303765:+|nuORF	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2300720214844	2	487.763643	973.512734	-0.31924	-0.00015571	-2.9781	-0.0014526	-3.2973	-0.0016083	487.76161585238356	31.526	0.44183	31.538	31.34	31.782	0.011799					23	10	3	0	0	0	0.027866	1	2078	2078		16.473	0	1	218570			8485	65	5571	5586	10021	10021					0.02491765488434794
DQRCSPVL	8	Unmodified	_DQRCSPVL_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2559814453125	2	459.229102	916.443651	-0.84891	-0.00038984	1.4145	0.00064957	0.56557	0.00025973	459.22950345555137	30.585	3.1191	30.585	29.26	32.379	0					205	76	4	0	0	0	0.027866	1	1806	1806		42.474	7.2737	1	1181100	+		8486	28014	5572	5587	10022	10022					-0.017913185311158486
DQRESLIQF	9	Unmodified	_DQRESLIQF_					0	0	0			REV__ENST00000482153.1_1_10:135122453-135123793:+|nuORF	REV__ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.8025512695312	2	568.290745	1134.56694	-0.99042	-0.00056285	-3.8092	-0.0021648	-4.7997	-0.0027276	568.2903279185083	81.621	0.40697	81.621	81.423	81.83	0					12	9	2	0	0	0	0.024021	1	10166	10166		68.787	0	1	77974	+		8487	28430	5573	5588	10023	10023					0.005036361209931783
DQRFQDADEK	10	Unmodified	_DQRFQDADEK_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.8589782714844	3	417.858191	1250.55274	0.039874	1.6662E-05	1.6133	0.00067414	1.6532	0.0006908	417.858756944749	32.046	0.9408	32.046	31.591	32.531	0					58	23	3	0	0	0	1.0177	1	2193	2193		43.651	2.2242	1	1622000			8488	680	5574	5589	10024	10024					-0.06251061097964339
DQRFQDADEK	10	Unmodified	_DQRFQDADEK_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	417.858191	1250.55274	-0.1266	-5.2902E-05	1.616	0.00067527	1.4894	0.00062237	417.8587764258377	31.808	0.91135	31.82	31.465	32.376	0.011797	-0.018574	-8.8276E-05	NaN	43.651	64	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1536000			8489	680	5574	5589							-0.06251061097964339
DQRFQDADEK	10	Unmodified	_DQRFQDADEK_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	417.858191	1250.55274	-0.18824	-7.8656E-05	1.8262	0.00076311	1.638	0.00068445	417.8588268184156	31.58	0.99532	31.649	31.288	32.284	0.06896	-0.18921	0.00017523	NaN	43.651	61	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1078100			8490	680	5574	5589							-0.06251061097964339
DQRGSFVDEPL	11	Unmodified	_DQRGSFVDEPL_					0	0	0			REV__ENSG00000173917|ENST00000330070|HOXB2	REV__ENSG00000173917|ENST00000330070|HOXB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.2381896972656	3	421.53857	1261.59388	-0.03084	-1.3E-05	0.53385	0.00022504	0.50301	0.00021204	421.53888865414484	32.245	1.0736	32.087	31.694	32.767	-0.15772					32	25	2	0	0	0	0.024759	1	2271	2271		17.833	3.7471	1	165520	+		8491	26821	5575	5590	10025	10025					-0.02645300058452449
DQRGSFVDEPL	11	Unmodified	_DQRGSFVDEPL_					0	0	0			REV__ENSG00000173917|ENST00000330070|HOXB2	REV__ENSG00000173917|ENST00000330070|HOXB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	421.53857	1261.59388	0.10043	4.2336E-05	1.2244	0.00051614	1.3248	0.00055847	421.53894598945493	32.285	0.63235	32.048	31.824	32.457	-0.23666	-0.034942	0.00044963	NaN	16.53	32	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171790	+		8492	26821	5575	5590							-0.02645300058452449
DQRGSFVDEPL	11	Unmodified	_DQRGSFVDEPL_					0	0	0			REV__ENSG00000173917|ENST00000330070|HOXB2	REV__ENSG00000173917|ENST00000330070|HOXB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	421.53857	1261.59388	0.47966	0.00020219	0.72591	0.000306	1.2056	0.00050819	421.5386812849536	32.307	0.597	32.114	31.899	32.496	-0.19261	0.030926	-0.00018078	NaN	16.53	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121060	+		8493	26821	5575	5590							-0.02645300058452449
DQRKKMLKN	9	Unmodified	_DQRKKMLKN_					0	0	0		ENST00000477040.1_1_1:36921391-36921985:-|nuORF;ENST00000488606.5_1_1:36921391-36923601:-|nuORF;ENSG00000116898|ENST00000373116|MRPS15	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	580.3091430664062	2	580.832057	1159.64956	-1.1203	-0.0006507	-2.2594	-0.0013123	-3.3797	-0.001963	580.8290839241038	64.458	0.63123	64.196	63.901	64.532	-0.2626					31	16	4	0	0	0	0.024344	1	7593	7593		37.812	11.748	1	483220			8494	3590	5576	5591	10026	10026					0.0761225464814288
DQRLLKLI	8	Unmodified	_DQRLLKLI_					0	0	0		nc|ENSG00000133110|Q15063-8|POSTN;ENSG00000133110|ENST00000379747|POSTN;nc|ENSG00000133110|Q15063-7|POSTN;nc|ENSG00000133110|Q15063-6|POSTN;nc|ENSG00000133110|Q15063-4|POSTN;nc|ENSG00000133110|Q15063-10|POSTN;nc|ENSG00000133110|Q15063-2|POSTN;CON__Q2KJC7;nc|ENSG00000133110|Q15063-3|POSTN;nc|ENSG00000133110|Q15063-9|POSTN;nc|ENSG00000133110|Q15063-5|POSTN	nc|ENSG00000133110|Q15063-8|POSTN	nc|ENSG00000133110|Q15063-8|POSTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.791015625	2	499.821484	997.628415	-0.48423	-0.00024203	-0.28883	-0.00014436	-0.77306	-0.00038639	499.8211354052762	29.556	0.62023	29.407	29.129	29.75	-0.14952					34	14	3	0	0	0	0.027866	1	1821	1821		20.947	0	1	576820		+	8495	4684	5577	5592	10027	10027					0.1295061261095043
DQRNPLIS	8	Unmodified	_DQRNPLIS_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.8016662597656	2	471.753798	941.493044	0.27268	0.00012864	2.7372	0.0012913	3.0099	0.0014199	471.7548194124412	51.198	0.26357	50.921	50.778	51.042	-0.27643					9	6	2	0	0	0	0.027866	1	5248	5248		12.207	0	1	106120	+		8496	28058	5578	5593	10028	10028					0.019957127493285043
DQRQGRLLQI	10	Unmodified	_DQRQGRLLQI_					0	0	0			REV__ENST00000567020.6_2_16:2546055-2546238:+|nuORF	REV__ENST00000567020.6_2_16:2546055-2546238:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5703430175781	3	409.570316	1225.68912	0.57597	0.0002359	-0.71959	-0.00029472	-0.14362	-5.8824E-05	409.5700316746526	32.044	1.1631	32.107	31.799	32.962	0.062885					92	29	5	0	0	0	0.98527	1	2159	2159		47.96	5.0953	1	5773500	+		8497	35312	5579	5594	10029	10029					0.08530097923244284
DQRQVIIL	8	Unmodified	_DQRQVIIL_					0	0	0			REV__ENSG00000112218|ENST00000229955|GPR63	REV__ENSG00000112218|ENST00000229955|GPR63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.728515625	2	492.795466	983.57638	0.39551	0.00019491	-1.3778	-0.00067897	-0.98228	-0.00048406	492.7946945831941	63.432	0.65492	63.174	62.876	63.531	-0.25824					29	16	3	0	0	0	0.027866	1	7176	7176		23.042	4.7181	1	565840	+		8498	21979	5580	5595	10030	10030					0.08393449197183145
DQRQVISVPIW	11	Unmodified	_DQRQVISVPIW_					0	0	0		ENSG00000258659|ENST00000429814|TRIM34;ENST00000495668.1_1_11:5664055-5664936:+|nuORF	ENSG00000258659|ENST00000429814|TRIM34	ENSG00000258659|ENST00000429814|TRIM34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.2080993652344	3	447.582221	1339.72483	0.2066	9.2472E-05	-0.89913	-0.00040244	-0.69253	-0.00030996	447.5816649573692	21.442	0.73514	21.251	20.637	21.372	-0.19072					23	14	2	0	0	0	0.024723	1	621	621		28.577	16.37	1	18113			8499	10929	5581	5596	10031	10031					0.06856135380212436
DQRRQQGY	8	Unmodified	_DQRRQQGY_					0	0	0		ENSG00000214456|ENST00000381848|PLIN5	ENSG00000214456|ENST00000381848|PLIN5	ENSG00000214456|ENST00000381848|PLIN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2691650390625	2	525.757404	1049.50025	-0.14494	-7.6204E-05	-0.3044	-0.00016004	-0.44934	-0.00023624	525.757192298465	49.019	0.7082	48.837	48.558	49.266	-0.18206					34	18	3	0	0	0	0.027866	1	4957	4957		29.15	20.918	1	752090			8500	10556	5582	5597	10032	10032					-0.022515546502290817
DQRSRQASD	9	Unmodified	_DQRSRQASD_					0	0	0			REV__ENSG00000164062|ENST00000296456|APEH	REV__ENSG00000164062|ENST00000296456|APEH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7655029296875	2	531.749776	1061.485	-0.81859	-0.00043529	-1.0042	-0.00053396	-1.8227	-0.00096924	531.7497226590397	40.542	0.16909	40.565	40.494	40.663	0.023006					5	4	2	0	0	0	0.024313	1	3515	3515		51.193	1.1682	1	49878	+		8501	25682	5583	5598	10033	10033					-0.04328466238098372
DQRWLIDI	8	Unmodified	_DQRWLIDI_					0	0	0			REV__NFE2L2|p.I28T|1|0.56|ENSG00000116044|chr2:177234234-177234234|A/G|missense_variant	REV__NFE2L2|p.I28T|1|0.56|ENSG00000116044|chr2:177234234-177234234|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.298583984375	2	529.785099	1057.55564	-1.5008	-0.00079511	3.8143	0.0020207	2.3135	0.0012256	529.7852180080653	30.969	1.2345	30.969	30.675	31.91	0					50	29	3	0	0	0	0.027866	1	2017	2017		66.429	0	1	132110	+		8502	20700	5584	5599	10034	10034					0.029168588175252808
DQSATLSREL	10	Unmodified	_DQSATLSREL_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.8048706054688	2	560.28566	1118.55677	-0.43996	-0.0002465	3.2807	0.0018382	2.8408	0.0015916	560.7873132536148	57.191	0.52477	57.286	56.978	57.503	0.095306					25	13	3	0	0	0	0.03519	1	6376	6376		65.465	8.7443	1	739430	+		8503	25309	5585	5600	10035	10035					0.0022302839577150735
DQSGGEPEGR	10	Unmodified	_DQSGGEPEGR_					0	0	0			REV__nc|ENSG00000137337|Q14676-3|MDC1	REV__nc|ENSG00000137337|Q14676-3|MDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2924194335938	2	516.223059	1030.43157	-1.2866	-0.00066417	0.43453	0.00022432	-0.85205	-0.00043985	516.2233020343317	40.168	0.48268	40.191	39.977	40.46	0.023003					21	12	2	0	0	0	0.03519	1	3479	3479		31.53	0	1	403540	+		8504	23748	5586	5601	10036	10036					-0.08243263740610018
DQSLAQYQSR	10	Unmodified	_DQSLAQYQSR_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	599.244140625	2	598.288734	1194.56291	-0.90232	-0.00053985	0.89004	0.0005325	-0.01228	-7.3472E-06	598.289266566561	27.095	0.74086	26.852	26.335	27.076	-0.24217					47	17	3	0	0	0	0.03519	1	1493	1493		28.081	5.5018	1	841690	+		8505	21318	5587	5602	10037	10037					-0.026584533727373127
DQSQWMTKW	9	Oxidation (M)	_DQSQWM(Oxidation (M))TKW_		DQSQWM(1)TKW		DQSQWM(110)TKW	0	0	1			REV__nc|ENSG00000135114|Q15646-2|OASL	REV__nc|ENSG00000135114|Q15646-2|OASL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.2709350585938	2	613.268955	1224.52336	-0.52037	-0.00031913	3.5078	0.0021512	2.9875	0.0018321	613.270916800364	24.972	1.1126	24.797	24.34	25.453	-0.17484					66	25	4	0	0	0	0.1158	1	1151	1151		107.01	29.69	1	1664500	+		8506	23515	5588	5603	10038	10038		700			-0.07992296647807962
DQSRLEQM	8	Unmodified	_DQSRLEQM_					0	0	0			REV__ENSG00000080986|ENST00000261597|NDC80	REV__ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.76373291015625	2	503.734748	1005.45494	-0.0037839	-1.9061E-06	-2.7907	-0.0014058	-2.7945	-0.0014077	503.73327213473493	35.028	0.20395	34.812	34.63	34.833	-0.21555					6	4	2	0	0	0	0.027866	1	2620	2620		42.396	19.354	1	118160	+		8507	20669	5589	5604	10039	10039					-0.04756541227629896
DQSYHTHLL	9	Unmodified	_DQSYHTHLL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.798095703125	2	557.269813	1112.52507	0.34126	0.00019017	1.8263	0.0010177	2.1675	0.0012079	557.7734554598522	82.006	0.21148	81.777	81.608	81.819	-0.2289					5	4	2	0	0	0	0.024447	1	9856	9856		32.812	10.233	1	28914			8508	8976	5590	5605	10040	10040					-0.026689195675317023
DQTAEGPLLL	10	Unmodified	_DQTAEGPLLL_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3154296875	2	528.782222	1055.54989	-0.52416	-0.00027717	-3.0297	-0.001602	-3.5538	-0.0018792	528.7804541785406	66.391	0.82092	66.391	66.105	66.926	0					30	24	2	0	0	0	0.03519	1	7969	7969		29.17	0	1	956060	+		8509	25218	5591	5606	10041	10041					0.024337155151897605
DQTCMPPYST	10	Unmodified	_DQTCMPPYST_					0	0	0			REV__nc|ENSG00000198848|P23141-3|CES1	REV__nc|ENSG00000198848|P23141-3|CES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.7282104492188	2	571.728274	1141.442	-1.5713	-0.00089838	0.94689	0.00054137	-0.62445	-0.00035702	571.7286734344957	51.347	1.3189	51.434	51.039	52.358	0.087006					94	35	4	0	0	0	0.91678	1	5357	5357		52.937	5.2794	1	4867000	+		8510	28498	5592	5607	10042	10042					-0.12306740402073046
DQTCMPPYST	10	Unmodified	_DQTCMPPYST_					0	0	0			REV__nc|ENSG00000198848|P23141-3|CES1	REV__nc|ENSG00000198848|P23141-3|CES1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.7279052734375	2	571.728274	1141.442	0.4047	0.00023138	-0.85479	-0.00048871	-0.45009	-0.00025733	571.7277714030618	51.661	1.0013	51.543	51.202	52.203	-0.11876					77	26	4	0	0	0	1.0992	1	5323	5323		32.812	0	1	4679300	+		8511	28498	5592	5607	10043	10043					-0.12306740402073046
DQTHMDRF	8	Unmodified	_DQTHMDRF_					0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2586059570312	2	525.227091	1048.43963	-0.67662	-0.00035538	3.7685	0.0019793	3.0919	0.001624	525.2288261338447	26.597	0.65917	26.574	26.283	26.943	-0.023087					32	15	3	0	0	0	0.027866	1	1337	1337		55.504	0	1	246320	+		8512	25922	5593	5608	10044	10044					-0.08265408024840326
DQTIKQMY	8	Oxidation (M)	_DQTIKQM(Oxidation (M))Y_		DQTIKQM(1)Y		DQTIKQM(80)Y	0	0	1			REV__ENST00000459706.1_1_2:15760479-15761249:+|nuORF	REV__ENST00000459706.1_1_2:15760479-15761249:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7474365234375	2	521.747324	1041.4801	-0.07653	-3.993E-05	-0.11343	-5.918E-05	-0.18996	-9.911E-05	521.7471613517711	36.767	1.8241	36.55	35.647	37.471	-0.21661					153	47	4	0	0	0	0.56067	1	2947	2947		79.939	10.312	1	3314100	+		8513	31515	5594	5609	10045	10045		880			-0.03898486425077863
DQTKDGLI	8	Unmodified	_DQTKDGLI_					0	0	0		ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13;SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12	ENSG00000004864|ENST00000265631|SLC25A13	ENSG00000004864|ENST00000265631|SLC25A13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.25445556640625	2	445.234907	888.455261	-0.58648	-0.00026112	1.2621	0.00056192	0.67559	0.0003008	445.2353495564463	34.332	0.59579	34.157	33.934	34.53	-0.17557					23	14	2	0	0	0	0.027866	1	2557	2557		31.955	0	1	220470			8514	750	5595	5610	10046	10046					0.006572017638518446
DQTKDGLI	8	Unmodified	_DQTKDGLI_					0	0	0		ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13;SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12	ENSG00000004864|ENST00000265631|SLC25A13	ENSG00000004864|ENST00000265631|SLC25A13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	445.234907	888.455261	-0.27406	-0.00012202	2.8221	0.0012565	2.548	0.0011345	445.23630230171017	34.163	0.77422	34.163	33.816	34.59	0	-0.00067497	0.0013145	NaN	31.955	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58828			8515	750	5595	5610							0.006572017638518446
DQTKDGLI	8	Unmodified	_DQTKDGLI_					0	0	0		ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13;SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12	ENSG00000004864|ENST00000265631|SLC25A13	ENSG00000004864|ENST00000265631|SLC25A13	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	445.234907	888.455261	-0.051166	-2.2781E-05	1.2948	0.00057648	1.2436	0.0005537	445.23540979764016	34.347	0.3012	34.123	33.997	34.299	-0.22412	-0.039955	-4.5522E-05	NaN	31.955	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146700			8516	750	5595	5610							0.006572017638518446
DQTKDGLI	8	Unmodified	_DQTKDGLI_					0	0	0		ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13;SLC25A12|p.A532Sfs*9|1|0.3|ENSG00000115840|chr2:171787940-171787941|-/G|frameshift_variant;ENSG00000115840|ENST00000422440|SLC25A12	ENSG00000004864|ENST00000265631|SLC25A13	ENSG00000004864|ENST00000265631|SLC25A13	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	445.234907	888.455261	-0.23418	-0.00010427	0.70899	0.00031567	0.47481	0.0002114	445.235105405174	34.417	0.31575	34.21	33.968	34.284	-0.20696	0.047094	-0.00056715	NaN	31.955	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130450			8517	750	5595	5610							0.006572017638518446
DQTLDKNPA	9	Unmodified	_DQTLDKNPA_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2510986328125	2	501.248546	1000.48254	0.28832	0.00014452	-0.24033	-0.00012046	0.047998	2.4059E-05	501.2483733429364	104.84	0.69293	104.84	104.5	105.19	0					54	22	3	0	0	0	0.89441	1	13444	13444		32.812	1.2826	1	339730	+		8518	26447	5596	5611	10047	10047					-0.017683146957665485
DQTLPWISL	9	Unmodified	_DQTLPWISL_					0	0	0			REV__ENST00000495058.5_1_20:56822334-56847858:-|nuORF	REV__ENST00000495058.5_1_20:56822334-56847858:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3226928710938	2	536.787307	1071.56006	-0.75982	-0.00040786	2.977	0.001598	2.2172	0.0011902	536.7889459029068	81.735	0.24355	81.604	81.461	81.705	-0.13075					8	5	2	0	0	0	0.023842	1	10151	10151		49.536	14.384	1	67761	+		8519	29463	5597	5612	10048	10048					0.027143232404114315
DQTLVIKT	8	Unmodified	_DQTLVIKT_					0	0	0		nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2485656738281	2	459.26875	916.522947	1.0546	0.00048432	-0.4739	-0.00021765	0.58066	0.00026668	459.26851825986455	70.97	0.62704	70.677	70.329	70.956	-0.29292					25	14	3	0	0	0	0.027866	1	8583	8583		21.96	9.753	1	284980			8520	18665;10368	5598	5613	10049	10049					0.06134651694674176
DQTLVIKT	8	Unmodified	_DQTLVIKT_					0	0	0		nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	459.26875	916.522947	1.0164	0.00046678	-0.3533	-0.00016226	0.66306	0.00030452	459.2685613710631	70.596	0.42824	70.596	70.44	70.868	0	-0.077579	-0.0002264	NaN	15.642	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274690			8521	18665;10368	5598	5613							0.06134651694674176
DQTLVIKT	8	Unmodified	_DQTLVIKT_					0	0	0		nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	459.26875	916.522947	0.32774	0.00015052	0.79434	0.00036482	1.1221	0.00051533	459.2692327786884	70.736	0.55363	70.747	70.384	70.937	0.010735	0.074047	0.00082775	NaN	15.642	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279810			8522	18665;10368	5598	5613							0.06134651694674176
DQTPPRGALE	10	Unmodified	_DQTPPRGALE_					0	0	0			REV__ENST00000256108.9_1_8:82593790-82598571:-|nuORF	REV__ENST00000256108.9_1_8:82593790-82598571:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.3222045898438	2	542.275095	1082.53564	-0.79527	-0.00043125	-2.5965	-0.001408	-3.3918	-0.0018393	542.2735816036	60.301	0.44279	60.301	60.066	60.509	0					19	11	3	0	0	0	0.03519	1	6913	6913		32.812	4.9302	1	142090	+		8523	29549	5599	5614	10050	10050					-0.0023293691308481357
DQTQICKQI	9	Unmodified	_DQTQICKQI_					0	0	0		SBDS|p.E82Q|1|0.22|ENSG00000126524|chr7:66994226-66994226|C/G|missense_variant	SBDS|p.E82Q|1|0.22|ENSG00000126524|chr7:66994226-66994226|C/G|missense_variant	SBDS|p.E82Q|1|0.22|ENSG00000126524|chr7:66994226-66994226|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8244018554688	2	538.773874	1075.53319	-0.97491	-0.00052526	3.8265	0.0020616	2.8516	0.0015364	539.2755979156717	48.246	0.17125	48.246	48.14	48.311	0					6	4	2	0	0	0	0.024288	1	4915	4915		71.877	3.0906	1	48160			8524	37853	5600	5615	10051	10051					-0.0015510864241150557
DQVAYTALL	9	Unmodified	_DQVAYTALL_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2686462402344	2	497.266207	992.517862	-0.35959	-0.00017881	4.4429	0.0022093	4.0833	0.0020305	497.26837861192877	36.109	3.0502	36.147	35.652	38.702	0.038044					198	83	4	0	0	0	0.5973	1	2888	2888		52.937	5.2794	1	12565000			8525	7399	5601	5616	10052	10052					0.021303478320305658
DQVFKVIVL	9	Unmodified	_DQVFKVIVL_					0	0	0			REV__nc|ENSG00000136205|Q68CZ2-2|TNS3	REV__nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.2859497070312	2	530.823692	1059.63283	-0.37925	-0.00020132	1.292	0.0006858	0.9127	0.00048448	530.8242184214837	70.104	0.88656	70.116	69.751	70.637	0.012421					41	23	2	0	0	0	0.024427	1	8448	8448		51.335	14.889	1	3558300	+		8526	23637	5602	5617	10053	10053					0.10540077033851958
DQVGVGQLW	9	Unmodified	_DQVGVGQLW_					0	0	0		nc|ENSG00000182698|Q5W5W9-3|RESP18;ENSG00000182698|ENST00000333527|RESP18	nc|ENSG00000182698|Q5W5W9-3|RESP18	nc|ENSG00000182698|Q5W5W9-3|RESP18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29327392578125	2	501.256174	1000.49779	0.085152	4.2683E-05	0.27162	0.00013615	0.35677	0.00017883	501.25584373253315	50.565	0.3359	50.285	50.031	50.367	-0.27977					10	8	2	0	0	0	0.024261	1	5145	5145		30.318	0	1	129260			8527	9154	5603	5618	10054	10054					-0.0024340310790194053
DQVHQKAVQ	9	Unmodified	_DQVHQKAVQ_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.769287109375	2	526.777805	1051.54106	-0.56245	-0.00029629	-1.6712	-0.00088037	-2.2337	-0.0011767	526.7768377034977	53.936	0.36188	53.788	53.493	53.855	-0.14723					15	9	2	0	0	0	0.024381	1	5793	5793		45.952	0	1	671700	+		8528	20633	5604	5619	10055	10055					0.0173478666936262
DQVHQKAVQ	9	Unmodified	_DQVHQKAVQ_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.777805	1051.54106	-0.28492	-0.00015009	-0.087186	-4.5927E-05	-0.3721	-0.00019601	526.7771478166807	54.028	0.2745	53.783	53.559	53.833	-0.2453	0.037221	0.0013737	NaN	68.787	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144500	+		8529	20633	5604	5619							0.0173478666936262
DQVHQKAVQ	9	Unmodified	_DQVHQKAVQ_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.777805	1051.54106	-0.27475	-0.00014473	-1.3133	-0.00069181	-1.588	-0.00083654	526.7769323065271	53.863	0.30419	53.666	53.523	53.827	-0.19739	-0.079862	8.1975E-05	NaN	68.787	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178890	+		8530	20633	5604	5619							0.0173478666936262
DQVKKQLK	8	Unmodified	_DQVKKQLK_					0	0	0			REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF	REV__ENST00000556340.1_1_9:139265151-139266545:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.25323486328125	2	493.803291	985.59203	0.07872	3.8872E-05	-0.97777	-0.00048283	-0.89905	-0.00044395	493.80272120899457	57.182	0.38717	57.018	56.813	57.2	-0.16432					18	10	2	0	0	0	0.027866	1	6376	6376		26.693	0	1	654070	+		8531	27976	5605	5620	10056	10056					0.09865735714242874
DQVKLEILP	9	Unmodified	_DQVKLEILP_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.769287109375	2	527.810782	1053.60701	-0.42037	-0.00022187	-0.3745	-0.00019766	-0.79486	-0.00041954	527.8106216403096	54.014	0.74047	53.867	53.529	54.27	-0.14723					44	20	3	0	0	0	0.024257	1	5793	5793		67.494	18.052	1	1102100			8532	6504	5606	5621	10057	10057					0.08235182791554507
DQVKLEILP	9	Unmodified	_DQVKLEILP_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.810782	1053.60701	-0.34317	-0.00018113	-0.53846	-0.00028421	-0.88163	-0.00046533	527.8105010503646	54.031	0.64487	53.786	53.49	54.135	-0.2453	-0.013419	-0.00039491	NaN	77.318	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	756190			8533	6504	5606	5621							0.08235182791554507
DQVKLEILP	9	Unmodified	_DQVKLEILP_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.810782	1053.60701	-0.17209	-9.0831E-05	-1.0026	-0.00052921	-1.1747	-0.00062004	527.8103676673701	53.912	0.74408	53.714	53.387	54.131	-0.19739	-0.084859	-0.00088491	NaN	77.318	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497130			8534	6504	5606	5621							0.08235182791554507
DQVLAVNDVD	10	Unmodified	_DQVLAVNDVD_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8275756835938	2	544.266936	1086.51932	-0.95644	-0.00052056	-0.73927	-0.00040236	-1.6957	-0.00092292	544.2665292339755	61.714	0.41369	61.714	61.492	61.906	0					17	10	2	0	0	0	0.03519	1	7133	7133		21.686	10.175	1	92372			8535	3820	5607	5622	10058	10058					-0.020480628698578585
DQVNITEFY	9	Unmodified	_DQVNITEFY_					0	0	0		ENSG00000118432|ENST00000369501|CNR1;nc|ENSG00000118432|P21554-3|CNR1	ENSG00000118432|ENST00000369501|CNR1	ENSG00000118432|ENST00000369501|CNR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.7646484375	2	564.764029	1127.5135	0.34795	0.00019651	-0.21157	-0.00011949	0.13638	7.7024E-05	564.7638140465955	76.928	0.46338	76.66	76.424	76.887	-0.26806					38	10	5	0	0	0	0.56934	2	9139	9119;9139		54.776	3.5836	1	1573500			8536	3682	5608	5623	10059;10060	10060					-0.045151613815278324
DQVNPNLY	8	Unmodified	_DQVNPNLY_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7613830566406	2	481.732532	961.45051	0.46288	0.00022298	-1.5647	-0.00075375	-1.1018	-0.00053077	481.73146908732576	41.706	0.24659	41.706	41.579	41.825	0					11	6	2	0	0	0	0.027866	1	3758	3758		11.511	0	1	109720	+		8537	26216	5609	5624	10061	10061					-0.031756823789010014
DQVPAEKLGF	10	Unmodified	_DQVPAEKLGF_					0	0	0			REV__ENSG00000278129|ENST00000621650|ZNF8	REV__ENSG00000278129|ENST00000621650|ZNF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2998657226562	2	552.290214	1102.56587	-0.79936	-0.00044148	-3.9891	-0.0022032	-4.7885	-0.0026446	552.2878760592594	26.684	1.1011	26.66	26.203	27.304	-0.023087					71	27	4	0	0	0	0.03519	1	1324	1324		47.657	0	1	214260	+		8538	29213	5610	5625	10062	10062					0.018694217520987877
DQVREVKRHI	10	Unmodified	_DQVREVKRHI_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.2644348144531	3	427.245832	1278.71567	-0.79015	-0.00033759	2.5709	0.0010984	1.7808	0.00076083	427.24800394229305	53.872	0.34125	53.736	53.496	53.837	-0.13617					13	10	2	0	0	0	0.03519	1	5686	5686		14.694	5.8944	1	529990			8539	662	5611	5626	10063	10063					0.08745786814552048
DQVRPMVML	9	Unmodified	_DQVRPMVML_					0	0	0			REV__ENST00000373616.9_1_6:36935956-36936193:-|nuORF	REV__ENST00000373616.9_1_6:36935956-36936193:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3180541992188	2	544.783187	1087.55182	-1.6279	-0.00088686	3.5631	0.0019411	1.9352	0.0010542	544.785198720139	91.338	0.59577	91.338	91.133	91.729	0					24	13	2	0	0	0	0.024495	1	11538	11538		34.173	0	1	185860	+		8540	31263	5612	5627	10064	10064					0.011547297278184487
DQVTHELGI	9	Unmodified	_DQVTHELGI_					0	0	0		nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF	nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.8233337402344	2	506.258914	1010.50327	-0.11464	-5.8036E-05	-1.8552	-0.00093922	-1.9699	-0.00099726	506.2579383027599	60.48	1.2144	60.274	59.794	61.008	-0.20599					47	30	2	0	0	0	0.023596	1	6722	6722		35.618	0	1	229070			8541	1053	5613	5628	10065	10065					-0.0015572431610735293
DQVVEKIEDLL	11	Unmodified	_DQVVEKIEDLL_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;nc|ENSG00000140694|O95453-3|PARN;PARN|p.C597Lfs*15|1|0.06|ENSG00000140694|chr16:14446962-14446962|C/-|frameshift_variant;ENSG00000140694|ENST00000437198|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.2366943359375	3	434.238009	1299.6922	0.044825	1.9465E-05	-1.9351	-0.00084031	-1.8903	-0.00082084	434.2376145296231	72.85	1.8799	72.585	71.881	73.761	-0.26479					75	45	3	0	0	0	1.0341	1	8564	8564		29.245	3.1816	1	591720			8542	5438	5614	5629	10066	10066					0.05433883466730549
DQVVKKLV	8	Unmodified	_DQVVKKLV_					0	0	0			REV__ENST00000494465.5_1_2:242592964-242606150:+|nuORF	REV__ENST00000494465.5_1_2:242592964-242606150:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2791442871094	2	464.794935	927.575317	-0.5103	-0.00023719	3.2116	0.0014927	2.7013	0.0012555	464.79719232445996	51.585	0.177	51.438	51.3	51.477	-0.14735					6	4	2	0	0	0	0.027866	1	5443	5443		37.159	19.794	1	105520	+		8543	33784	5615	5630	10067	10067					0.10863234828275381
DQVVKKLV	8	Unmodified	_DQVVKKLV_					0	0	0			REV__ENST00000494465.5_1_2:242592964-242606150:+|nuORF	REV__ENST00000494465.5_1_2:242592964-242606150:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.27886962890625	2	464.794935	927.575317	0.39654	0.00018431	3.2857	0.0015272	3.6822	0.0017115	464.79788855063765	51.702	0.10601	51.584	51.504	51.61	-0.11876					4	2	2	0	0	0	0.027866	1	5320	5320		29.15	4.9468	1	46621	+		8544	33784	5615	5630	10068	10068					0.10863234828275381
DQWCHTIR	8	Unmodified	_DQWCHTIR_					0	0	0			REV__ENSG00000158077|ENST00000299481|NLRP14	REV__ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.801025390625	2	529.74545	1057.47635	-0.48746	-0.00025823	-3.3958	-0.0017989	-3.8833	-0.0020571	529.7439253317187	41.125	0.80581	41.125	40.347	41.153	0					30	22	2	0	0	0	0.027866	1	3597	3597		45.952	0	1	304020	+		8545	25170	5616	5631	10069	10069					-0.0500911140829885
DQWTLIFG	8	Unmodified	_DQWTLIFG_					0	0	0		ENSG00000040531|ENST00000046640|CTNS;nc|ENSG00000040531|O60931-2|CTNS	ENSG00000040531|ENST00000046640|CTNS	ENSG00000040531|ENST00000046640|CTNS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.25177001953125	2	490.247818	978.481082	-1.0376	-0.0005087	0.45379	0.00022247	-0.58384	-0.00028623	490.2476437703681	65.37	0.33238	65.097	64.863	65.195	-0.27283					10	8	2	0	0	0	0.027866	1	7681	7681		31.955	0	1	66984			8546	1067	5617	5632	10070	10070					-0.009019039938380047
DQWVGISH	8	Unmodified	_DQWVGISH_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.75396728515625	2	471.227417	940.44028	-0.059367	-2.7975E-05	3.2495	0.0015312	3.1901	0.0015033	471.22851367746586	32.458	0.23131	32.458	32.3	32.531	0					8	5	2	0	0	0	0.027866	1	2244	2244		24.203	1.1603	1	38771	+		8547	26592	5618	5633	10071	10071					-0.032322453134838725
DQYMDFAL	8	Unmodified	_DQYMDFAL_					0	0	0			REV__ENSG00000116198|ENST00000378230|CEP104	REV__ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7404479980469	2	501.715493	1001.41643	-0.2657	-0.0001333	-3.061	-0.0015357	-3.3267	-0.0016691	501.7138210484005	40.257	1.8997	40.032	39.3	41.2	-0.225					66	49	2	0	0	0	0.027866	1	3601	3601		38.806	0	1	219990	+		8548	22267	5619	5634	10072	10072					-0.08421846862177063
DRALVPPAGV	10	Unmodified	_DRALVPPAGV_					0	0	0		ENST00000543661.1_1_11:67231974-67232409:-|nuORF	ENST00000543661.1_1_11:67231974-67232409:-|nuORF	ENST00000543661.1_1_11:67231974-67232409:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2684326171875	2	497.787641	993.56073	-0.30999	-0.00015431	1.0259	0.00051068	0.7159	0.00035637	497.7872763637086	34.909	0.9426	34.909	34.785	35.728	0					35	24	4	0	0	0	0.03519	1	2711	2711		49.442	6.9671	1	242060			8549	16469	5620	5635	10073	10073					0.06369162680130103
DRAPRGPLL	9	Unmodified	_DRAPRGPLL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.268310546875	2	497.793258	993.571963	0.62439	0.00031082	2.2138	0.001102	2.8382	0.0014128	497.7945009928412	36.685	0.49958	36.685	36.543	37.042	0					19	12	2	0	0	0	0.02435	1	2913	2913		51.335	23.453	1	118340	+		8550	21027	5621	5636	10074	10074					0.07491984774276261
DRCAPASPAL	10	Unmodified	_DRCAPASPAL_					0	0	0		ENST00000432031.6_1_2:179315212-179315317:-|nuORF	ENST00000432031.6_1_2:179315212-179315317:-|nuORF	ENST00000432031.6_1_2:179315212-179315317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7466125488281	2	500.747659	999.480765	0.23055	0.00011545	-3.6353	-0.0018203	-3.4047	-0.0017049	500.7457945971024	53.021	1.2864	52.894	52.353	53.639	-0.12705					96	33	4	0	0	0	0.55353	1	5542	5542		82.241	2.5279	1	7054800			8551	14193	5622	5637	10075	10075					-0.01899646985373238
DRDIRQIH	8	Unmodified	_DRDIRQIH_					0	0	0			REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2974853515625	2	526.783422	1051.55229	-0.40225	-0.0002119	4.2592	0.0022437	3.857	0.0020318	526.7858831832536	55.28	0.33686	55.13	54.929	55.266	-0.15036					10	9	2	0	0	0	0.027866	1	6061	6061		29.15	0	1	70688	+		8552	37202	5623	5638	10076	10076					0.028576087635201475
DRDNKVDI	8	Unmodified	_DRDNKVDI_					0	0	0			REV__nc|ENSG00000206075|P36952-2|SERPINB5	REV__nc|ENSG00000206075|P36952-2|SERPINB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.79022216796875	2	487.748713	973.482873	0.084249	4.1093E-05	-1.7677	-0.0008622	-1.6835	-0.00082111	487.74823053096316	81.488	0.45732	81.259	81.022	81.479	-0.2289					17	10	2	0	0	0	0.027866	1	9773	9773		32.812	0	1	57368	+		8553	37090	5624	5639	10077	10077					-0.00492894975911895
DRDQQTIS	8	Unmodified	_DRDQQTIS_					0	0	0			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.7322998046875	2	481.73052	961.446488	0.1118	5.3858E-05	3.9843	0.0019194	4.0961	0.0019732	481.73241627706994	57.282	2.588	57.282	56.745	59.333	0					166	70	5	0	0	0	0.44658	1	6482	6482		90.777	11.064	1	18734000	+		8554	26721	5625	5640	10078	10078					-0.03577771872619451
DREKIAVI	8	Unmodified	_DREKIAVI_					0	0	0		ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2824401855469	2	472.282192	942.549831	0.42228	0.00019944	-0.46981	-0.00022188	-0.047525	-2.2445E-05	472.2818414116828	50.924	0.55966	50.647	50.407	50.967	-0.27643					27	14	2	0	0	0	0.74904	1	5185	5185		63.306	8.53	1	3099400			8555	5854	5626	5641	10079	10079					0.0762576030585933
DRENVAVY	8	Unmodified	_DRENVAVY_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.27398681640625	2	483.237981	964.461409	-0.99413	-0.0004804	3.4754	0.0016795	2.4813	0.0011991	483.24045318518586	30.737	0.66098	30.737	30.3	30.961	0					21	15	2	0	0	0	0.027866	1	1949	1949		26.796	0	1	146810			8556	1550	5627	5642	10080	10080					-0.022242800046228695
DREREREG	8	Unmodified	_DREREREG_					0	0	0			REV__SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|61|2|anti-sense	REV__SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|61|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.8126220703125	2	523.752318	1045.49008	0.038045	1.9926E-05	3.6794	0.0019271	3.7175	0.001947	523.7538650680783	23.226	0.36913	23.024	22.826	23.195	-0.20193					11	7	2	0	0	0	0.027866	1	878	878		30.504	0	1	42259	+		8557	37632	5628	5643	10081	10081					-0.030841623754668035
DRESEQFLKL	10	Unmodified	_DRESEQFLKL_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8863220214844	3	422.222582	1263.64592	0.0083435	3.5228E-06	-3.6921	-0.0015589	-3.6837	-0.0015554	422.2208154271145	17.946	0.39915	17.739	17.414	17.813	-0.20669					10	7	2	0	0	0	0.03519	1	235	235		20.03	4.0237	1	44844	+		8558	23174	5629	5644	10082	10082					0.02463863355274043
DRGYRRLLT	9	Unmodified	_DRGYRRLLT_					0	0	0			REV__nc|ENSG00000115325|Q99704-3|DOK1	REV__nc|ENSG00000115325|Q99704-3|DOK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.2654418945312	2	575.327996	1148.64144	-0.13417	-7.719E-05	3.1523	0.0018136	3.0181	0.0017364	575.3296652743799	57.608	0.67376	57.418	57.076	57.75	-0.19017					42	17	3	0	0	0	0.024477	1	6339	6339		14.865	0	1	1033900	+		8559	19701	5630	5645	10083	10083					0.07306443723041411
DRHILKKSH	9	Unmodified	_DRHILKKSH_					0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3298950195312	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.86013	1	11380	11380		35.152	3.6222	1	18337000	+		8560	20204	5631	5646	10084	10084					0.0855074758567298
DRHLLLYARGH	11	Unmodified	_DRHLLLYARGH_					0	0	0			REV__ENSG00000177414|ENST00000371077|UBE2U	REV__ENSG00000177414|ENST00000371077|UBE2U	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.9164123535156	3	450.917827	1349.73165	-0.87959	-0.00039662	-2.2777	-0.0010271	-3.1573	-0.0014237	450.91673342440487	24.349	1.1515	24.301	23.783	24.935	-0.047148					66	25	4	0	0	0	1.0183	1	1055	1055		32.751	5.1066	1	756490	+		8561	27111	5632	5647	10085	10085					0.07077493051451711
DRIFQNYY	8	Unmodified	_DRIFQNYY_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.817138671875	2	559.766906	1117.51926	-0.92601	-0.00051835	-3.1263	-0.00175	-4.0523	-0.0022683	559.7649094461831	37.887	0.2192	37.666	37.542	37.761	-0.22149					7	5	2	0	0	0	0.027866	1	3079	3079		34.173	9.6534	1	108310	+		8562	23169	5633	5648	10086	10086					-0.03480018079198999
DRILLHRPN	9	Unmodified	_DRILLHRPN_					0	0	0			REV__HSP90B1|p.P692L|1|0.18|ENSG00000166598|chr12:103946665-103946665|C/T|missense_variant	REV__HSP90B1|p.P692L|1|0.18|ENSG00000166598|chr12:103946665-103946665|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3291015625	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.96906	1	11592	11592		26.693	0.62953	1	14972000	+		8563	36135	5634	5649	10087	10087					0.08550747585650242
DRIRARRCT	9	Unmodified	_DRIRARRCT_					0	0	0			REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.78466796875	2	573.817273	1145.61999	-0.40858	-0.00023445	3.918	0.0022482	3.5094	0.0020137	574.319419635353	52.507	0.19822	52.387	52.28	52.478	-0.12063					6	4	2	0	0	0	0.024405	1	5448	5448		20.947	0	1	46744	+		8564	26399	5635	5650	10088	10088					0.05300735422656544
DRKCVPVP	8	Unmodified	_DRKCVPVP_					0	0	0		nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2768249511719	2	457.249837	912.485122	0.084035	3.8425E-05	-2.3365	-0.0010684	-2.2525	-0.0010299	457.24819111014773	25.517	0.45825	25.345	25.034	25.492	-0.17151					20	10	3	0	0	0	0.027866	1	1182	1182		29.15	0	1	72937			8565	3363	5636	5651	10089	10089					0.02537862228200538
DRKKKSISL	9	Unmodified	_DRKKKSISL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;ENST00000517549.1_1_8:134050771-134052457:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.8350830078125	2	537.835123	1073.65569	-1.1031	-0.0005933	1.0961	0.0005895	-0.0070721	-3.8036E-06	537.8356173570306	20.663	0.54572	20.44	20.216	20.762	-0.22344					22	10	3	0	0	0	0.80003	1	551	551		39.253	2.8061	1	194560			8566	6500	5637	5652	10090	10090					0.12181096151334714
DRKKKSISL	9	Unmodified	_DRKKKSISL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA;ENST00000517549.1_1_8:134050771-134052457:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.835123	1073.65569	-0.22026	-0.00011846	0.20873	0.00011226	-0.011535	-6.2038E-06	537.8351155610757	20.571	0.49085	20.403	20.197	20.688	-0.16774	-0.026431	-0.00016393	NaN	39.253	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183350			8567	6500	5637	5652							0.12181096151334714
DRKLHISF	8	Unmodified	_DRKLHISF_					0	0	0			REV__ENSG00000250374|ENST00000503032|TRIM75	REV__ENSG00000250374|ENST00000503032|TRIM75	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2878723144531	2	508.287808	1014.56106	0.36012	0.00018304	-0.61737	-0.0003138	-0.25725	-0.00013075	508.2873679415835	52.919	1.1511	52.66	52.326	53.477	-0.25839					47	29	2	0	0	0	0.87148	1	5497	5497		53.351	2.016	1	2406100	+		8568	29025	5638	5653	10091	10091					0.05436582399988765
DRKLSSIL	8	Unmodified	_DRKLSSIL_					0	0	0		ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.75341796875	2	466.282192	930.549831	-1.421	-0.00066258	1.8531	0.00086405	0.43207	0.00020147	466.2831707092804	29.701	1.0637	29.701	29.57	30.634	0					51	25	4	0	0	0	0.027866	1	1865	1865		71.296	25.344	1	467350			8569	1269	5639	5654	10092	10092					0.08177760305852644
DRKQPSPA	8	Unmodified	_DRKQPSPA_					0	0	0		ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.7412414550781	2	449.740691	897.466829	-0.88915	-0.00039989	1.1309	0.0005086	0.24172	0.00010871	449.7410330188534	40.256	0.68174	40.026	39.697	40.378	-0.23021					40	17	3	0	0	0	0.85395	1	3462	3462		54.776	7.119	1	2239500			8570	3180	5640	5655	10093	10093					0.013994435778499792
DRKRHHVL	8	Unmodified	_DRKRHHVL_					0	0	0		nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG	nc|ENSG00000076248|P13051-2|UNG	nc|ENSG00000076248|P13051-2|UNG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8095092773438	2	530.809774	1059.60499	1.03	0.00054673	-1.6137	-0.00085654	-0.58367	-0.00030982	530.8089811467206	17.637	1.0901	17.483	17.159	18.249	-0.15403					54	21	5	0	0	0	0.845	1	198	198		55.504	11.387	1	2530100			8571	1579	5641	5656	10094	10094					0.0775761161698938
DRLFKAKQET	10	Unmodified	_DRLFKAKQET_					0	0	0		PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant;ENSG00000137338|ENST00000682144|PGBD1	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.90020751953125	3	412.562938	1234.66699	-1.224	-0.00050499	2.198	0.0009068	0.97396	0.00040182	412.56399469216825	29.041	0.30309	28.796	28.621	28.924	-0.24524					14	6	3	0	0	0	0.03519	1	1723	1723		21.78	7.6944	1	91715			8572	5115	5642	5657	10095	10095					0.059038734547812055
DRLKKFPE	8	Unmodified	_DRLKKFPE_					0	0	0		nc|ENSG00000141627|Q7RTS9-2|DYM;nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM	nc|ENSG00000141627|Q7RTS9-2|DYM	nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.794677734375	2	516.795466	1031.57638	-1.4127	-0.00073009	1.377	0.00071164	-0.035708	-1.8454E-05	516.7960099778252	64.931	0.6485	64.669	64.379	65.027	-0.2626					48	16	4	0	0	0	0.74904	1	7621	7621		63.306	5.495	1	4748900			8573	5511	5643	5658	10096	10096					0.06185449197187154
DRLLLAFLL	9	Unmodified	_DRLLLAFLL_					0	0	0		nc|ENSG00000137404|Q8IXM6-2|NRM;ENSG00000137404|ENST00000376421|NRM;ENST00000462857.5_1_6:30656440-30657876:-|nuORF;ENST00000470733.1_1_6:30656440-30657876:-|nuORF	nc|ENSG00000137404|Q8IXM6-2|NRM	nc|ENSG00000137404|Q8IXM6-2|NRM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.8086547851562	2	537.33951	1072.66447	0.56433	0.00030324	-0.41318	-0.00022202	0.15115	8.1222E-05	537.3390293001564	77.511	0.53375	77.269	77.041	77.575	-0.24232					21	12	3	0	0	0	0.024506	1	9226	9226		30.504	0	1	234090			8574	5117	5644	5659	10097	10097					0.13104069787800654
DRLLTILS	8	Unmodified	_DRLLTILS_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.795166015625	2	465.784567	929.554582	-0.025369	-1.1817E-05	0.094418	4.3978E-05	0.069049	3.2162E-05	465.7844407518157	55.082	1.0759	54.931	54.409	55.485	-0.15036					56	30	3	0	0	0	0.027866	1	6123	6123		26.693	0	1	782580	+		8575	23528	5645	5660	10098	10098					0.08698644448622872
DRLMNSLF	8	Unmodified	_DRLMNSLF_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2628479003906	2	498.252577	994.490601	-0.23687	-0.00011802	1.6017	0.00079805	1.3648	0.00068003	498.2533574348918	48.331	0.71969	48.144	47.978	48.698	-0.18684					38	19	3	0	0	0	0.027866	1	4805	4805		55.504	13.108	1	2314400	+		8576	25208	5646	5661	10099	10099					-0.006864589799874921
DRLPLAHQLY	10	Unmodified	_DRLPLAHQLY_					0	0	0		LIPG|p.W123R|1|0.2|ENSG00000101670|chr18:49567529-49567529|T/A|missense_variant	LIPG|p.W123R|1|0.2|ENSG00000101670|chr18:49567529-49567529|T/A|missense_variant	LIPG|p.W123R|1|0.2|ENSG00000101670|chr18:49567529-49567529|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	613.2903442382812	2	613.33803	1224.66151	-1.4025	-0.00086018	4.3553	0.0026713	2.9529	0.0018111	613.3405343430468	60.922	0.30833	60.716	60.62	60.928	-0.20599					11	7	2	0	0	0	0.03519	1	6821	6821		58.782	0	1	102280			8577	17917	5647	5662	10100	10100					0.058161946629979866
DRLPLRGREL	10	Unmodified	_DRLPLRGREL_					0	0	0		ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.7426452636719	3	408.910561	1223.70985	0.40401	0.0001652	4.4436	0.0018171	4.8476	0.0019823	408.9122642397243	55.566	0.92821	55.41	54.923	55.852	-0.15601					59	25	3	0	0	0	0.03519	1	6131	6131		24.232	0	1	709450			8578	12116	5648	5663	10101	10101					0.1069468830291953
DRLQLNPFRNN	11	Unmodified	_DRLQLNPFRNN_					0	0	0			REV__nc|ENSG00000055917|Q8TB72-2|PUM2	REV__nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7718200683594	3	462.912742	1385.7164	-0.43418	-0.00020099	1.2864	0.0005955	0.85225	0.00039452	463.2487495639076	23.379	0.3584	23.379	23.123	23.482	0					11	8	2	0	0	0	0.02473	1	888	888		33.039	26.021	1	38681	+		8579	20208	5649	5664	10102	10102					0.03896581463595794
DRMETEAAPAS	11	Unmodified	_DRMETEAAPAS_					0	0	0		ENST00000361871.7_2_16:1988507-1988831:-|nuORF	ENST00000361871.7_2_16:1988507-1988831:-|nuORF	ENST00000361871.7_2_16:1988507-1988831:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3445434570312	2	589.261327	1176.5081	-0.77956	-0.00045936	1.6477	0.00097095	0.86819	0.00051159	589.2621992083413	95.01	0.25887	94.873	94.723	94.982	-0.13689					6	5	2	0	0	0	0.024756	1	11714	11714		52.937	32.94	1	39793			8580	12807	5650	5665	10103	10103					-0.0730920823566521
DRMKKQGRL	9	Unmodified	_DRMKKQGRL_					0	0	0			REV__ENSG00000102935|ENST00000563137|ZNF423	REV__ENSG00000102935|ENST00000563137|ZNF423	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.32373046875	2	566.324399	1130.63425	-0.88244	-0.00049975	-2.9363	-0.0016629	-3.8188	-0.0021627	566.3227485471073	106.03	0.53613	105.89	105.56	106.09	-0.1328					55	22	3	0	0	0	0.80003	1	13188	13188		39.253	7.298	1	385150	+		8581	21342	5651	5666	10104	10104					0.07415387850960542
DRMKKQGRL	9	Unmodified	_DRMKKQGRL_					0	0	0			REV__ENSG00000102935|ENST00000563137|ZNF423	REV__ENSG00000102935|ENST00000563137|ZNF423	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	566.324399	1130.63425	0.46208	0.00026169	-4.2686	-0.0024174	-3.8066	-0.0021557	566.3219869268645	106.01	0.50353	105.85	105.65	106.16	-0.16132	0.0017111	-0.00062458	NaN	39.253	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515910	+		8582	21342	5651	5666							0.07415387850960542
DRNCDTGAF	9	Unmodified	_DRNCDTGAF_					0	0	0		nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3;ENST00000496526.5_1_3:9870593-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7-6|TTLL3;ENST00000473661.5_1_3:9867594-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7-2|TTLL3;ENST00000427220.5_1_3:9860474-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7-5|TTLL3;nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000214021|Q9Y4R7|TTLL3	nc|ENSG00000214021|Q9Y4R7|TTLL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7901916503906	2	499.703448	997.392344	-1.1464	-0.00057286	-2.482	-0.0012403	-3.6284	-0.0018131	499.7020450067181	29.477	0.67551	29.477	29.26	29.936	0					28	16	2	0	0	0	0.024374	1	1815	1815		19.104	0	1	188540			8583	10536	5652	5667	10105	10105					-0.10645687295846074
DRNIIRISS	9	Unmodified	_DRNIIRISS_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3116455078125	2	537.306729	1072.59891	-0.94374	-0.00050708	2.1153	0.0011365	1.1715	0.00062946	537.3069837697558	34.789	0.53687	34.789	34.444	34.981	0					20	13	3	0	0	0	0.024389	1	2575	2575		35.152	10.949	1	122170			8584	9909	5653	5668	10106	10106					0.06551048594792519
DRNIIRISS	9	Unmodified	_DRNIIRISS_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.306729	1072.59891	-0.86828	-0.00046653	1.7639	0.00094777	0.89564	0.00048124	537.3068139867866	34.593	0.43259	34.589	34.375	34.807	-0.0045624	-0.090902	-0.00068948	NaN	16.007	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125410			8585	9909	5653	5668							0.06551048594792519
DRNIIRISS	9	Unmodified	_DRNIIRISS_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.306729	1072.59891	-1.3441	-0.00072218	2.7228	0.001463	1.3787	0.0007408	537.3077247944387	34.611	0.46529	34.661	34.518	34.983	0.050255	-0.018572	0.00034094	NaN	16.007	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117760			8586	9909	5653	5668							0.06551048594792519
DRPDLVNGL	9	Unmodified	_DRPDLVNGL_					0	0	0			REV__ENSG00000137411|ENST00000676266|VARS2	REV__ENSG00000137411|ENST00000676266|VARS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.7692565917969	2	499.766906	997.519259	0.84229	0.00042095	3.5832	0.0017908	4.4255	0.0022117	499.76858045528	19.683	0.49541	19.483	19.305	19.801	-0.2001					23	9	3	0	0	0	0.87448	1	455	455		34.173	1.3601	1	383430	+		8587	23751	5654	5669	10107	10107					0.020399819208023473
DRPRDLEL	8	Unmodified	_DRPRDLEL_					0	0	0		nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;ENST00000404977.6_1_1:204937408-204955114:+|nuORF;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC	nc|ENSG00000163531|O94856-4|NFASC	nc|ENSG00000163531|O94856-4|NFASC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3002014160156	2	507.272355	1012.53016	-0.62651	-0.00031781	0.015749	7.9888E-06	-0.61076	-0.00030982	507.27231318576565	32.471	0.82766	32.483	32.182	33.01	0.011799					38	21	2	0	0	0	0.027866	1	2222	2222		79.451	18.479	1	1155300			8588	7100	5655	5670	10108	10108					0.02439384295075797
DRPRDLEL	8	Unmodified	_DRPRDLEL_					0	0	0		nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;ENST00000404977.6_1_1:204937408-204955114:+|nuORF;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC	nc|ENSG00000163531|O94856-4|NFASC	nc|ENSG00000163531|O94856-4|NFASC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.30047607421875	2	507.272355	1012.53016	-0.3059	-0.00015518	-0.186	-9.4355E-05	-0.49191	-0.00024953	507.2722165408715	32.246	0.96289	32.309	31.921	32.883	0.062889					43	24	2	0	0	0	0.027866	1	2190	2190		49.442	5.3247	1	1060300			8589	7100	5655	5670	10109	10109					0.02439384295075797
DRQIALLF	8	Unmodified	_DRQIALLF_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|300|3|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|300|3|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|300|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.2821350097656	2	488.284734	974.554916	-0.66886	-0.00032659	-0.40902	-0.00019972	-1.0779	-0.00052631	488.28442842015176	43.752	0.8285	43.533	43.211	44.04	-0.21938					48	22	3	0	0	0	0.78609	1	4021	4021		60.294	3.5729	1	2106200			8590	17731	5656	5671	10110	10110					0.0666206416847217
DRRKKTLS	8	Unmodified	_DRRKKTLS_					0	0	0		ENST00000482098.1_1_3:183171768-183171861:+|nuORF	ENST00000482098.1_1_3:183171768-183171861:+|nuORF	ENST00000482098.1_1_3:183171768-183171861:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7580261230469	2	502.30399	1002.59343	1.3675	0.00068689	2.1557	0.0010828	3.5232	0.0017697	502.30475551148777	37.158	0.33912	37.158	36.966	37.305	0					11	8	2	0	0	0	0.027866	1	3015	3015		40.778	12.896	1	80561			8591	15245	5657	5672	10111	10111					0.09223369802998604
DRRLKKKHELL	11	Unmodified	_DRRLKKKHELL_					0	0	0		nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;nc|ENSG00000139220|O75334-8|PPFIA2;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2	nc|ENSG00000139220|O75334-4|PPFIA2	nc|ENSG00000139220|O75334-4|PPFIA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2846374511719	3	479.300048	1434.87832	-0.44441	-0.000213	-2.0711	-0.00099266	-2.5155	-0.0012057	479.2991290912982	75.532	0.64873	75.532	75.269	75.918	0					29	17	3	0	0	0	0.024846	1	9316	9316		21.78	15.46	1	2148900			8592	5317	5658	5673	10112	10112					0.17827170216560262
DRRNGDPT	8	Unmodified	_DRRNGDPT_					0	0	0		ENST00000317287.5_1_12:56224118-56224328:-|nuORF	ENST00000317287.5_1_12:56224118-56224328:-|nuORF	ENST00000317287.5_1_12:56224118-56224328:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.75384521484375	2	465.72303	929.431506	-0.50439	-0.0002349	2.4954	0.0011622	1.991	0.00092727	465.7246275683377	23.524	0.37131	23.463	23.229	23.6	-0.060862					11	8	2	0	0	0	0.027866	1	943	943		38.806	10.924	1	28644			8593	12162	5659	5674	10113	10113					-0.036032189499451306
DRRTPKKPKCR	11	Unmodified	_DRRTPKKPKCR_					0	0	0			REV__nc|ENSG00000087460|O95467|GNAS	REV__nc|ENSG00000087460|O95467|GNAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7718505859375	3	462.269983	1383.78812	0.011486	5.3095E-06	-2.6134	-0.0012081	-2.6019	-0.0012028	462.2679255152611	23.186	0.23652	23.262	23.114	23.351	0.076241					8	5	2	0	0	0	0.024779	1	827	827		21.78	16.082	1	38761	+		8594	36489	5660	5675	10114	10114					0.11157797616465359
DRRTVFIA	8	Unmodified	_DRRTVFIA_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11;MFSD11|p.T177M|1|0.12|ENSG00000092931|chr17:76744355-76744355|C/T|missense_variant	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2524719238281	2	489.279983	976.545414	-1.0841	-0.00053042	-0.14076	-6.8871E-05	-1.2248	-0.00059929	489.28315813983977	79.539	0.79363	79.367	79.029	79.822	-0.17226					38	18	3	0	0	0	0.027866	1	9881	9881		38.806	6.8513	1	67723			8595	2000	5661	5676	10115	10115					0.056202958829544514
DRSQSREH	8	Unmodified	_DRSQSREH_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7635192871094	2	507.739211	1013.46387	-0.14097	-7.1574E-05	3.6659	0.0018613	3.5249	0.0017897	507.7409379744361	49.581	1.361	49.301	48.934	50.295	-0.27977					74	35	4	0	0	0	0.027866	1	4999	4999		49.442	13.823	1	2581000			8596	3209	5662	5677	10116	10116					-0.04232431546950011
DRSRWASP	8	Unmodified	_DRSRWASP_					0	0	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7952880859375	2	487.743765	973.472977	-0.58788	-0.00028673	0.30894	0.00015068	-0.27894	-0.00013605	487.7439820454626	30.861	0.38091	30.62	30.453	30.834	-0.24109					14	8	2	0	0	0	0.027866	1	2012	2012		40.573	5.3719	1	101210	+		8597	24895	5663	5678	10117	10117					-0.014820381906247349
DRSWKRNKF	9	Unmodified	_DRSWKRNKF_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.8907470703125	3	412.891389	1235.65234	0.4424	0.00018266	-1.82	-0.00075145	-1.3776	-0.00056879	412.89054449658374	20.883	1.0807	20.687	20.286	21.367	-0.19577					80	21	5	0	0	0	0.91321	1	648	648		31.53	3.4483	1	253780			8598	1904	5664	5679	10118	10118					0.04393846097309506
DRTNTAQFM	9	Unmodified	_DRTNTAQFM_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2456665039062	2	542.248023	1082.48149	-0.56964	-0.00030889	-2.6095	-0.001415	-3.1791	-0.0017239	542.2463534859929	89.743	0.77301	89.757	89.467	90.24	0.013435					44	18	4	0	0	0	0.35646	1	11270	11270		68.787	10.005	1	1009300			8599	3207	5665	5680	10119	10119					-0.05644852336331496
DRTRCTLL	8	Unmodified	_DRTRCTLL_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2657775878906	2	489.263476	976.512399	0.10189	4.9851E-05	3.0088	0.0014721	3.1107	0.0015219	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.845	2	6015	6015;6064		55.504	2.1528	1	81379000	+		8600	27966	5666	5681	10120;10121	10120					0.02320345768578136
DRVKPLQD	8	Unmodified	_DRVKPLQD_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.79254150390625	2	485.769448	969.524344	0.024043	1.1679E-05	-4.0277	-0.0019565	-4.0037	-0.0019449	485.76763010816563	83.398	1.8864	83.308	82.442	84.328	-0.090454					72	43	2	0	0	0	0.027866	1	10441	10441		82.305	28.954	1	123300			8601	9229	5667	5682	10122	10122					0.03836285783427229
DRVLRPAS	8	Unmodified	_DRVLRPAS_					0	0	0			REV__ENST00000427606.2_1_8:146220430-146220631:-|nuORF	REV__ENST00000427606.2_1_8:146220430-146220631:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2630310058594	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0106	1	10138	10138		35.618	2.1027	1	2920900	+		8602	32302	5668	5683	10123	10123					0.054357228488470355
DRVRLLVE	8	Unmodified	_DRVRLLVE_					0	0	0		nc|ENSG00000165983|Q96BW5-2|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.300537109375	2	500.300916	998.587279	-0.15362	-7.6857E-05	-1.7973	-0.00089921	-1.951	-0.00097607	500.30038800266993	32.337	0.64147	32.4	32.125	32.766	0.062885					77	16	7	0	0	0	0.6248	1	2183	2183		73.975	2.679	1	6558300			8603	18470	5669	5684	10124	10124					0.08792851571479332
DRVRSGGPE	9	Unmodified	_DRVRSGGPE_					0	0	0			REV__ENST00000497897.5_1_7:73151846-73153108:-|nuORF	REV__ENST00000497897.5_1_7:73151846-73153108:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	486.7474060058594	2	486.746505	971.478456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.38	1	106.26	105.76	106.76	-0.1238								0	0	0	0.63578	1	13243	13243		34.173	0.65696	1		+		8604	33862	5670	5685	10125	10125					-0.008423593988027278
DRWYERPVRFY	11	Unmodified	_DRWYERPVRFY_					0	0	0			REV__ENSG00000149328|ENST00000535456|GLB1L2;REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8056640625	3	529.600275	1585.779	-0.57871	-0.00030649	-3.4029	-0.0018022	-3.9817	-0.0021087	529.598247186423	53.852	0.63348	53.852	53.545	54.179	0					46	17	4	0	0	0	0.024886	1	5901	5901		6.3209	4.999	1	711880	+		8605	24672;25967	5671	5686	10126	10126					0.009537275317825333
DRWYQQFYMT	10	Unmodified	_DRWYQQFYMT_					0	0	0			REV__nc|ENSG00000166206|P28472-2|GABRB3	REV__nc|ENSG00000166206|P28472-2|GABRB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7676696777344	3	479.88005	1436.61832	-0.51432	-0.00024681	0.24756	0.0001188	-0.26676	-0.00012801	479.88005698132065	36.335	0.69072	36.373	36.031	36.721	0.038044					35	19	3	0	0	0	0.03519	1	2821	2821		30.569	12.736	1	155100	+		8606	36884	5672	5687	10127	10127					-0.08252363176620747
DRYVKAAY	8	Unmodified	_DRYVKAAY_					0	0	0			REV__ENSG00000164031|ENST00000442697|DNAJB14	REV__ENSG00000164031|ENST00000442697|DNAJB14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2908020019531	2	493.258717	984.50288	-0.41349	-0.00020396	-4.1495	-0.0020468	-4.563	-0.0022507	493.25651823466546	26.93	0.58393	26.917	26.621	27.205	-0.012983					20	14	2	0	0	0	0.027866	1	1397	1397		23.042	0	1	108840	+		8607	25672	5673	5688	10128	10128					0.010009007546955218
DRYWSDPYERS	11	Unmodified	_DRYWSDPYERS_					0	0	0			REV__nc|ENSG00000122390|Q9H7X0-2|NAA60	REV__nc|ENSG00000122390|Q9H7X0-2|NAA60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.2347717285156	3	491.884629	1472.63206	-1.0557	-0.00051928	-2.7855	-0.0013701	-3.8412	-0.0018894	491.8831915942123	40.377	0.36299	40.227	40.004	40.367	-0.1497					16	9	2	0	0	0	0.024834	1	3498	3498		23.378	5.5448	1	397300	+		8608	36621	5674	5689	10129	10129					-0.08535414143830167
DRYYKIVK	8	Unmodified	_DRYYKIVK_					0	0	0		ENSG00000174944|ENST00000309170|P2RY14	ENSG00000174944|ENST00000309170|P2RY14	ENSG00000174944|ENST00000309170|P2RY14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2901611328125	2	542.811116	1083.60768	-1.1521	-0.00062537	-0.45016	-0.00024435	-1.6022	-0.00086972	542.810441951611	48.314	0.40535	48.038	47.851	48.257	-0.27598					16	10	2	0	0	0	0.027866	1	4799	4799		57.811	0	1	224550			8609	8512	5675	5690	10130	10130					0.06922022231265146
DSAEKHEI	8	Unmodified	_DSAEKHEI_					0	0	0			REV__ENSG00000155792|ENST00000286234|DEPTOR	REV__ENSG00000155792|ENST00000286234|DEPTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.26690673828125	2	464.722164	927.429775	-0.12534	-5.825E-05	-1.272	-0.00059111	-1.3973	-0.00064936	464.7213752321558	42.672	0.72392	42.672	42.389	43.113	0					47	19	4	0	0	0	0.027866	1	3952	3952		34.173	5.023	1	1408900	+		8610	25028	5676	5691	10131	10131					-0.0368427275857357
DSALPLYSLG	10	Unmodified	_DSALPLYSLG_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2520751953125	2	518.27149	1034.52843	-0.0053911	-2.794E-06	2.3596	0.0012229	2.3542	0.0012201	518.2711604461955	74.978	0.74544	74.703	74.396	75.141	-0.27573					36	17	4	0	0	0	0.03519	1	8891	8891		27.882	0	1	279990			8611	6497	5677	5692	10132	10132					0.012543304864720994
DSAPSKENI	9	Unmodified	_DSAPSKENI_					0	0	0		nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.8009338378906	2	480.735271	959.45599	0.3816	0.00018345	-1.4714	-0.00070734	-1.0898	-0.00052389	480.7345047367345	94.289	0.6119	94.289	94.047	94.659	0					34	14	4	0	0	0	0.024292	1	11967	11967		40.778	7.2626	1	353590			8612	6448	5678	5693	10133	10133					-0.025360035871017317
DSAPSKENI	9	Unmodified	_DSAPSKENI_					0	0	0		nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.8009948730469	2	480.735271	959.45599	-0.59198	-0.00028458	-0.78732	-0.00037849	-1.3793	-0.00066308	480.7347569259531	94.275	0.56846	94.281	94.051	94.619	0.0059814					23	13	2	0	0	0	0.024263	1	11884	11884		51.335	8.9393	1	270550			8613	6448	5678	5693	10134	10134					-0.025360035871017317
DSAPSKENI	9	Unmodified	_DSAPSKENI_					0	0	0		nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.80078125	2	480.735271	959.45599	-0.3192	-0.00015345	-1.4266	-0.00068584	-1.7458	-0.00083929	480.734680354088	94.29	0.41199	94.153	93.921	94.333	-0.13779					13	9	2	0	0	0	0.024292	1	11629	11629		40.778	9.2484	1	87494			8614	6448	5678	5693	10135	10135					-0.025360035871017317
DSAQIEICVAD	11	Unmodified	_DSAQIEICVAD_					0	0	0		ENST00000599418.1_1_19:39437110-39437239:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.2666625976562	2	582.266078	1162.5176	-0.28414	-0.00016545	0.71407	0.00041578	0.42992	0.00025033	582.2665401659225	61.955	0.9133	61.741	61.293	62.206	-0.21375					69	22	4	0	0	0	0.67171	1	6955	6955		65.465	1.9315	1	2864800			8615	10995	5679	5694	10136	10136					-0.05715439950108703
DSAQIEICVAD	11	Unmodified	_DSAQIEICVAD_					0	0	0		ENST00000599418.1_1_19:39437110-39437239:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.2667236328125	2	582.266078	1162.5176	-0.60006	-0.00034939	1.1963	0.00069657	0.59626	0.00034718	582.2666095960315	62.018	0.86811	61.761	61.383	62.251	-0.25725					43	21	3	0	0	0	0.28368	2	6939	6939;6950		90.601	18.723	1	3240100			8616	10995	5679	5694	10137;10138	10137					-0.05715439950108703
DSAQIEICVAD	11	Unmodified	_DSAQIEICVAD_					0	0	0		ENST00000599418.1_1_19:39437110-39437239:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	582.266078	1162.5176	-1.5641	-0.00091075	0.34762	0.00020241	-1.2165	-0.00070834	582.2672246453516	61.722	0.63012	61.722	61.414	62.044	0	-0.015591	-0.00090992	NaN	90.601	55	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1053200			8617	10995	5679	5694							-0.05715439950108703
DSAQIEICVAD	11	Unmodified	_DSAQIEICVAD_					0	0	0		ENST00000599418.1_1_19:39437110-39437239:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	582.266078	1162.5176	-0.72207	-0.00042044	1.013	0.00058982	0.2909	0.00016938	582.2667644416908	61.942	0.59922	61.715	61.415	62.015	-0.22663	-0.022453	-0.00013511	NaN	90.601	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1095300			8618	10995	5679	5694							-0.05715439950108703
DSAQIEICVAD	11	Unmodified	_DSAQIEICVAD_					0	0	0		ENST00000599418.1_1_19:39437110-39437239:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	582.266078	1162.5176	-0.074293	-4.3258E-05	-0.9287	-0.00054075	-1.003	-0.00058401	582.2664020744477	61.662	0.59192	61.733	61.434	62.026	0.071129	-0.0045787	-0.0023962	NaN	90.601	47	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037100			8619	10995	5679	5694							-0.05715439950108703
DSAQIEICVAD	11	Unmodified	_DSAQIEICVAD_					0	0	0		ENST00000599418.1_1_19:39437110-39437239:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	582.266078	1162.5176	-1.5993	-0.0009312	1.774	0.0010329	0.17473	0.00010174	582.2671918491112	61.932	1.0665	61.754	61.162	62.229	-0.17781	0.016132	0.00075114	NaN	90.601	76	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3266800			8620	10995	5679	5694							-0.05715439950108703
DSAQKNERES	10	Unmodified	_DSAQKNERES_					0	0	0		nc|ENSG00000283154|P0DPB3-3|SCHIP1	nc|ENSG00000283154|P0DPB3-3|SCHIP1	nc|ENSG00000283154|P0DPB3-3|SCHIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.2664794921875	2	582.267998	1162.52144	-0.28414	-0.00016545	-2.5832	-0.0015041	-2.8674	-0.0016696	582.2665401659225	61.955	0.9133	61.741	61.293	62.206	-0.21375					69	22	4	0	0	0	0.55353	1	6943	6943		82.241	2.5279	1	2864800			8621	18804	5680	5695	10139	10139					-0.05331634132039653
DSARITLVE	9	Unmodified	_DSARITLVE_					0	0	0			REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2748107910156	2	502.274564	1002.53457	-0.34479	-0.00017318	-0.40971	-0.00020579	-0.75449	-0.00037896	502.2743666614946	48.637	1.8074	48.637	48.277	50.084	0					145	50	5	0	0	0	0.12602	1	5027	5027		104.75	11.551	1	33137000	+		8622	20542	5681	5696	10140	10140					0.033408487179940494
DSARITLVE	9	Unmodified	_DSARITLVE_					0	0	0			REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2749328613281	2	502.274564	1002.53457	-0.39647	-0.00019914	-0.3691	-0.00018539	-0.76558	-0.00038453	502.2744118269498	48.48	1.9747	48.547	48.191	50.165	0.066795					146	54	5	0	0	0	0.37611	1	4946	4946		67.494	8.7117	1	23991000	+		8623	20542	5681	5696	10141	10141					0.033408487179940494
DSCALHIV	8	Unmodified	_DSCALHIV_					0	0	0			REV__ENSG00000185385|ENST00000641113|OR7A17	REV__ENSG00000185385|ENST00000641113|OR7A17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2559509277344	2	429.212921	856.411288	-0.72451	-0.00031097	0.88531	0.00037999	0.16081	6.902E-05	429.2130881779256	44.796	1.1979	44.796	44.382	45.58	0					71	34	3	0	0	0	0.027866	1	4255	4255		21.702	0	1	500550	+		8624	27759	5682	5697	10142	10142					-0.02266105934108964
DSCMYYKY	8	Unmodified	_DSCMYYKY_					0	0	0			REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	REV__ENST00000602430.1_1_3:51575458-51575656:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.707275390625	2	536.709353	1071.40415	-0.42724	-0.0002293	-3.6745	-0.0019722	-4.1018	-0.0022015	536.7072120643876	56.957	0.86016	56.733	56.386	57.246	-0.2248					57	22	4	0	0	0	0.97924	1	6163	6163		40.573	1.7665	1	5809800	+		8625	35872	5683	5698	10143	10143					-0.1286920659686075
DSDDDVKPIT	10	Unmodified	_DSDDDVKPIT_					0	0	0		CLNS1A|p.E107K|1|0.07|ENSG00000074201|chr11:77625762-77625762|C/T|missense_variant	CLNS1A|p.E107K|1|0.07|ENSG00000074201|chr11:77625762-77625762|C/T|missense_variant	CLNS1A|p.E107K|1|0.07|ENSG00000074201|chr11:77625762-77625762|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.8040771484375	2	552.756401	1103.49825	0.15936	8.8086E-05	-1.0722	-0.00059269	-0.91289	-0.00050461	552.7563254390221	57.416	0.6934	57.214	56.855	57.549	-0.20208					28	18	2	0	0	0	0.03519	1	6301	6301		22.58	5.1116	1	531050			8626	454	5684	5699	10144	10144					-0.049360729693717076
DSDEVELGAG	10	Unmodified	_DSDEVELGAG_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.2143249511719	2	496.214369	990.414184	0.12837	6.3697E-05	0.7663	0.00038025	0.89467	0.00044395	496.2145858256494	69.622	0.94941	69.372	69.033	69.983	-0.25063					49	22	3	0	0	0	0.941	1	8093	8093		51.335	1.8939	1	1183900	+		8627	25289	5685	5700	10145	10145					-0.08140604066261403
DSDFFTSYY	9	Unmodified	_DSDFFTSYY_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.7274169921875	2	572.727112	1143.43967	0.69901	0.00040034	-0.55186	-0.00031607	0.14714	8.4273E-05	572.726686783366	84.479	0.91928	84.321	84.02	84.939	-0.15869					65	21	5	0	0	0	0.13494	1	10231	10231		102.77	28.799	1	1263400			8628	1156	5686	5701	10146	10146					-0.1263112954384269
DSDFFTSYY	9	Unmodified	_DSDFFTSYY_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.72705078125	2	572.727112	1143.43967	0.43911	0.00025149	-0.34372	-0.00019686	0.095391	5.4633E-05	572.7267612551923	84.527	0.88341	84.389	84.064	84.948	-0.13789					61	20	4	0	0	0	0.014907	1	10215	10215		162.31	80.001	1	1311200			8629	1156	5686	5701	10147	10147					-0.1263112954384269
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.5229187011719	3	436.522808	1306.5466	-0.38256	-0.000167	0.25363	0.00011072	-0.12893	-5.6282E-05	436.522829660428	47.801	0.73476	47.703	47.451	48.186	-0.097553					66	19	4	0	0	0	0.99657	1	4715	4715		46.457	3.0382	1	3128900			8630	1002	5687	5702	10148	10148					-0.09441579329472916
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.52301025390625	3	436.522808	1306.5466	-0.72909	-0.00031826	0.54117	0.00023623	-0.18792	-8.2033E-05	436.52298987520146	48.189	0.83768	47.913	47.595	48.433	-0.27598					70	22	4	0	0	0	0.44975	2	4758	4746;4758		93.598	33.667	1	3332200			8631	1002	5687	5702	10149;10150	10150					-0.09441579329472916
DSDFRKDDFY	10	Unmodified	_DSDFRKDDFY_					0	0	0		ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.522705078125	3	436.522808	1306.5466	0.68154	0.00029751	-0.89699	-0.00039156	-0.21544	-9.4046E-05	436.5223664652503	47.95	0.91129	47.763	47.457	48.368	-0.18684					71	24	4	0	0	0	0.58878	2	4717	4717;4729		78.264	21.632	1	3530300			8632	1002	5687	5702	10151;10152	10151					-0.09441579329472916
DSDGKRLAR	9	Unmodified	_DSDGKRLAR_					0	0	0			REV__ENSG00000242802|ENST00000649063|AP5Z1	REV__ENSG00000242802|ENST00000649063|AP5Z1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.3092956542969	2	509.275429	1016.53631	0.015635	7.9624E-06	-2.7329	-0.0013918	-2.7173	-0.0013839	509.7767114531574	83.612	0.59271	83.473	82.995	83.588	-0.1386					21	13	2	0	0	0	0.024261	1	10082	10082		64.207	14.766	1	62574	+		8633	28982	5688	5703	10153	10153					0.02869902526617807
DSDGLTLKEL	10	Unmodified	_DSDGLTLKEL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant;DIDO1|p.E476Rfs*15|1|0.36|ENSG00000101191|chr20:62906049-62906050|-/T|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3240356445312	2	545.784961	1089.55537	-0.60962	-0.00033272	-0.28819	-0.00015729	-0.89781	-0.00049001	545.7840201094883	68.348	0.8736	68.348	67.987	68.861	0					43	22	3	0	0	0	0.03519	1	8176	8176		49.536	0	1	1748000			8634	2291	5689	5704	10154	10154					0.0141739430700909
DSDGSCAVYT	10	Carbamidomethyl (C)	_DSDGSC(Carbamidomethyl (C))AVYT_	DSDGSC(1)AVYT		DSDGSC(59)AVYT		0	1	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.70166015625	2	537.705854	1073.39715	-0.51521	-0.00027703	-4.0323	-0.0021682	-4.5475	-0.0024452	537.7035957802727	89.107	1.1427	88.979	88.617	89.76	-0.12775					67	26	4	0	0	0	0.82838	1	10891	10891		58.782	9.3404	1	1740700			8635	1519	5690	5705	10155	10155	21				-0.13660847943742738
DSDGSFFLY	9	Unmodified	_DSDGSFFLY_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7244873046875	2	525.724372	1049.43419	-0.77659	-0.00040827	0.79377	0.00041731	0.01718	9.0321E-06	525.7247015513813	89.138	1.4609	88.976	88.554	90.015	-0.1626					96	34	4	0	0	0	0.028181	6	10875	10852;10863;10875;10887;10899;10911		143.02	73.926	1	4296600			8636	18703	5691	5706	10156;10157;10158;10159;10160;10161	10158					-0.08854808335649977
DSDGSFFLY	9	Unmodified	_DSDGSFFLY_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.724365234375	2	525.724372	1049.43419	-0.25981	-0.00013659	0.090866	4.777E-05	-0.16894	-8.8818E-05	525.7243594315938	89.105	1.7975	88.977	88.532	90.329	-0.12774					129	42	5	0	0	0	0.013805	7	10881	10861;10871;10881;10893;10907;10919;10932		167.82	102.02	1	9079400			8637	18703	5691	5706	10162;10163;10164;10165;10166;10167;10168	10164					-0.08854808335649977
DSDGSFFLY	9	Unmodified	_DSDGSFFLY_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7243041992188	2	525.724372	1049.43419	0.22113	0.00011625	-0.51724	-0.00027192	-0.29611	-0.00015567	525.7240613516361	89.146	2.098	89.008	88.607	90.705	-0.13762					138	49	5	0	0	0	0.014251	9	10850	10839;10850;10861;10873;10885;10897;10910;10922;10936		219.18	136.43	1	11425000			8638	18703	5691	5706	10169;10170;10171;10172;10173;10174;10175;10176;10177	10170					-0.08854808335649977
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		ENSG00000078403|ENST00000307729|MLLT10;nc|ENSG00000078403|P55197-1|MLLT10	ENSG00000078403|ENST00000307729|MLLT10	ENSG00000078403|ENST00000307729|MLLT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.7796630859375	2	542.730717	1083.44688	-0.55869	-0.00030322	-0.075347	-4.0893E-05	-0.63403	-0.00034411	542.7308569712438	35.373	1.1889	35.157	34.307	35.496	-0.21555					63	29	4	0	0	0	0.024359	1	2681	2681		56.434	27.284	1	1029100			8639	1636	5692	5707	10178	10178					-0.09150396943414307
DSDLRNDSY	9	Unmodified	_DSDLRNDSY_					0	0	0		ENSG00000078403|ENST00000307729|MLLT10;nc|ENSG00000078403|P55197-1|MLLT10	ENSG00000078403|ENST00000307729|MLLT10	ENSG00000078403|ENST00000307729|MLLT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7793579101562	2	542.730717	1083.44688	-0.68646	-0.00037256	0.113	6.1328E-05	-0.57346	-0.00031123	542.7310316156287	35.3	1.1992	35.087	34.196	35.395	-0.21246					64	29	4	0	0	0	0.024253	1	2675	2675		70.816	40.313	1	881180			8640	1636	5692	5707	10179	10179					-0.09150396943414307
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(74)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.236083984375	2	544.234247	1086.45394	-0.52119	-0.00028365	0.24974	0.00013592	-0.27145	-0.00014773	544.2345014300798	58.761	1.0027	58.573	58.18	59.182	-0.18795					84	24	5	0	0	0	0.31037	1	6474	6474		74.255	18.751	1	3785700			8641	6122	5693	5708	10180	10180		256			-0.08582800387216594
DSDMQTLVY	9	Oxidation (M)	_DSDM(Oxidation (M))QTLVY_		DSDM(1)QTLVY		DSDM(69)QTLVY	0	0	1		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2354125976562	2	544.234247	1086.45394	0.0091619	4.9862E-06	0.092959	5.0592E-05	0.10212	5.5578E-05	544.2341328697557	58.79	1.1677	58.608	58.228	59.395	-0.18134					60	28	3	0	0	0	0.35646	1	6481	6481		68.787	13.283	1	3773900			8642	6122	5693	5708	10181	10181		256			-0.08582800387216594
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.2369384765625	2	536.23679	1070.45903	-0.98916	-0.00053043	0.8572	0.00045966	-0.13197	-7.0765E-05	536.2371288974899	69.309	1.1288	69.044	68.662	69.791	-0.26508					72	26	4	0	0	0	0.013887	4	8031	8019;8031;8044;8057		180.93	76.179	1	5058600			8643	6122	5693	5709	10182;10183;10184;10185	10183					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2365112304688	2	536.23679	1070.45903	-0.16961	-9.0952E-05	0.028917	1.5507E-05	-0.14069	-7.5446E-05	536.2366872073766	69.301	1.1598	69.058	68.707	69.866	-0.24277					72	27	4	0	0	0	0.014988	4	8039	8027;8039;8050;8063		161.9	62.523	1	5445300			8644	6122	5693	5709	10186;10187;10188;10189	10187					-0.07338496524585025
DSDMQTLVY	9	Unmodified	_DSDMQTLVY_					0	0	0		ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2365112304688	2	536.23679	1070.45903	-0.80317	-0.00043069	0.67076	0.00035968	-0.13242	-7.1007E-05	536.2369863229598	69.266	1.1192	69.043	68.645	69.764	-0.22245					76	26	5	0	0	0	0.021872	4	8027	8015;8027;8038;8051		148.04	71.269	1	5191600			8645	6122	5693	5709	10190;10191;10192;10193	10191					-0.07338496524585025
DSDPFSSFY	9	Unmodified	_DSDPFSSFY_					0	0	0		ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7136840820312	2	532.714005	1063.41346	0.027038	1.4404E-05	-0.29277	-0.00015596	-0.26573	-0.00014156	532.7137409477459	86.047	1.0416	85.851	85.51	86.552	-0.19508					61	23	4	0	0	0	0.022311	3	10420	10420;10431;10443		147.69	69.132	1	1127800			8646	2019	5694	5710	10194;10195;10196	10194					-0.11571398715318537
DSDPFSSFY	9	Unmodified	_DSDPFSSFY_					0	0	0		ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.7139282226562	2	532.714005	1063.41346	0.24132	0.00012856	-0.49127	-0.00026171	-0.24995	-0.00013315	532.7136406747875	85.962	0.94881	85.812	85.451	86.4	-0.14967					63	21	4	0	0	0	0.012965	4	10437	10427;10437;10449;10464		172.03	86.672	1	1673000			8647	2019	5694	5710	10197;10198;10199;10200	10198					-0.11571398715318537
DSDPFSSFY	9	Unmodified	_DSDPFSSFY_					0	0	0		ENST00000496688.1_1_9:123589031-123593637:-|nuORF;ENST00000373903.1_1_9:123586619-123589169:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	ENST00000496688.1_1_9:123589031-123593637:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7137451171875	2	532.714005	1063.41346	0.046643	2.4847E-05	-0.31493	-0.00016777	-0.26828	-0.00014292	532.7137446154527	86.017	0.99508	85.88	85.535	86.53	-0.13734					69	22	5	0	0	0	0.012965	3	10411	10411;10423;10436		172.03	86.672	1	1690200			8648	2019	5694	5710	10201;10202;10203	10201					-0.11571398715318537
DSDPLCIPQ	9	Unmodified	_DSDPLCIPQ_					0	0	0			REV__ENSG00000187950|ENST00000537054|OVCH1	REV__ENSG00000187950|ENST00000537054|OVCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.30810546875	2	494.226225	986.437897	0.25454	0.0001258	-3.0675	-0.0015161	-2.813	-0.0013903	494.2246220475801	68.562	0.41084	68.581	68.353	68.764	0.018913					13	10	2	0	0	0	0.02435	1	8161	8161		34.173	2.6427	1	76968	+		8649	27993	5695	5711	10204	10204					-0.05586461833445355
DSDQDSCRLSI	11	Unmodified	_DSDQDSCRLSI_					0	0	0		nc|ENSG00000125618|Q06710-2|PAX8;ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-5|PAX8;nc|ENSG00000125618|Q06710-4|PAX8;nc|ENSG00000125618|Q06710-3|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2145080566406	3	413.515436	1237.52448	0.44184	0.00018271	-2.9199	-0.0012074	-2.4781	-0.0010247	413.5144561788117	24.538	0.2756	24.616	24.455	24.731	0.078344					7	5	2	0	0	0	0.024727	1	1019	1019		34.501	8.9268	1	17850			8650	4120	5696	5712	10205	10205					-0.08478127069543007
DSDRGLQEGY	10	Unmodified	_DSDRGLQEGY_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.25146484375	2	570.251817	1138.48908	-0.55751	-0.00031792	0.24117	0.00013753	-0.31634	-0.0001804	570.2519391097518	38.705	0.63728	38.483	38.221	38.858	-0.22149					48	16	4	0	0	0	0.1169	2	3210	3210;3222		131.62	18.705	1	1546300			8651	8599	5697	5713	10206;10207	10206					-0.07462421535024077
DSDRGLQEGY	10	Unmodified	_DSDRGLQEGY_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.2512817382812	2	570.251817	1138.48908	-0.082693	-4.7156E-05	-0.50779	-0.00028957	-0.59049	-0.00033673	570.2515226768373	38.689	0.5606	38.464	38.21	38.771	-0.2257					51	14	5	0	0	0	0.082298	1	3199	3199		140.11	14.298	1	1490000			8652	8599	5697	5713	10208	10208					-0.07462421535024077
DSDSHFEQLMV	11	Unmodified	_DSDSHFEQLMV_					0	0	0		nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;ENST00000550798.1_1_12:82070563-82148000:-|nuORF;PPFIA2|p.V156Wfs*2|1|0.39|ENSG00000139220|chr12:81445660-81445660|C/-|frameshift_variant;nc|ENSG00000139220|O75334-2|PPFIA2	nc|ENSG00000139220|O75334-4|PPFIA2	nc|ENSG00000139220|O75334-4|PPFIA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.52264404296875	3	436.523932	1306.54997	-0.38256	-0.000167	-2.3204	-0.0010129	-2.7029	-0.0011799	436.522829660428	47.801	0.73476	47.703	47.451	48.186	-0.097553					66	19	4	0	0	0	0.96309	1	4703	4703		45.022	0.64502	1	3128900			8653	5317	5698	5714	10209	10209					-0.09104652547148362
DSDSHSDSSKS	11	Unmodified	_DSDSHSDSSKS_					0	0	0			REV__nc|ENSG00000120688|O75554-2|WBP4	REV__nc|ENSG00000120688|O75554-2|WBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.7881469726562	2	576.225996	1150.43744	-0.7451	-0.00042934	-2.0947	-0.001207	-2.8398	-0.0016364	576.2247189337162	69.164	0.26636	69.179	69.014	69.28	0.015129					10	6	2	0	0	0	0.024774	1	8229	8229		38.754	0	1	95908	+		8654	36613	5699	5715	10210	10210					-0.13176210019605605
DSDSVPAFY	9	Unmodified	_DSDSVPAFY_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7163391113281	2	500.716547	999.418542	0.20167	0.00010098	-0.092008	-4.607E-05	0.10967	5.4912E-05	500.71636015791665	71.326	0.81264	71.051	70.699	71.511	-0.2751					51	18	4	0	0	0	0.36105	1	8304	8304		68.485	21.718	1	2230000			8655	4368	5700	5716	10211	10211					-0.08119094852713715
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40719142-40721608:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.217041015625	2	564.217443	1126.42033	-0.053563	-3.0221E-05	-0.15985	-9.0189E-05	-0.21341	-0.00012041	564.217229063855	34.309	0.9818	34.085	33.721	34.703	-0.22412					70	24	4	0	0	0	0.041068	3	2504	2504;2514;2527		132.76	66.329	1	3281200			8656	2931	5701	5717	10212;10213;10214	10212					-0.13782085834759528
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40719142-40721608:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.217529296875	2	564.217443	1126.42033	-0.20738	-0.00011701	0.079476	4.4842E-05	-0.12791	-7.2167E-05	564.2173564777183	34.074	0.93625	33.867	33.549	34.485	-0.20695					69	23	4	0	0	0	0.03666	3	2490	2467;2477;2490		136.27	72.734	1	2956500			8657	2931	5701	5717	10215;10216;10217	10217					-0.13782085834759528
DSDYHQEAY	9	Unmodified	_DSDYHQEAY_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40719142-40721608:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2174072265625	2	564.217443	1126.42033	-1.3493	-0.00076132	1.1754	0.00066318	-0.17393	-9.8134E-05	564.2180112156499	33.898	0.90169	33.722	33.391	34.293	-0.17557					61	22	4	0	0	0	0.020687	3	2435	2435;2447;2461		148.99	73.306	1	3040600			8658	2931	5701	5717	10218;10219;10220	10218					-0.13782085834759528
DSDYLWRSL	9	Unmodified	_DSDYLWRSL_					0	0	0		nc|ENSG00000164049|Q6X9E4-2|FBXW12;nc|ENSG00000164049|Q6X9E4-3|FBXW12;ENSG00000164049|ENST00000296438|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.2443237304688	2	577.77747	1153.54039	-0.82872	-0.00047881	0.086197	4.9803E-05	-0.74252	-0.00042901	577.7771324944068	65.38	0.36608	65.129	64.946	65.312	-0.25112					12	8	2	0	0	0	0.024466	1	7465	7465		24.519	3.5723	1	149610			8659	7196	5702	5718	10221	10221					-0.03024052770342678
DSEENDAE	8	Unmodified	_DSEENDAE_					0	0	0			REV__ENST00000489788.5_1_X:135304004-135309568:-|nuORF	REV__ENST00000489788.5_1_X:135304004-135309568:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.662841796875	2	454.659426	907.3043	0.29873	0.00013582	3.6875	0.0016766	3.9862	0.0018124	454.6625127910412	68.669	1.8667	68.426	67.707	69.574	-0.24277					185	45	5	0	0	0	1.0574	1	7969	7969		27.882	2.4321	1	1459100	+		8660	23059	5703	5719	10222	10222					-0.15306029405462596
DSEIQKLDQM	10	Unmodified	_DSEIQKLDQM_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9;nc|ENSG00000115514|O14530-2|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.8664245605469	3	402.860544	1205.5598	0.51626	0.00020798	-3.7504	-0.0015109	-3.2341	-0.0013029	402.8588656273431	43.095	0.29589	42.982	42.775	43.071	-0.11253					9	7	2	0	0	0	0.03519	1	3942	3942		22.562	1.5294	1	58639			8661	3456	5704	5720	10223	10223					-0.03475464541747897
DSEKLLYVL	9	Unmodified	_DSEKLLYVL_					0	0	0		ENSG00000118898|ENST00000345988|PPL;PPL|p.E413Gfs*46|1|0.28|ENSG00000118898|chr16:4895270-4895271|-/T|frameshift_variant	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MSMS	OPSCC_39_ClassI_Rep-1	1	540.300048828125	2	540.30279	1078.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.43	1	107.43	106.93	107.93	0								0	0	0	0.47068	1	13802	13802		56.721	0	1				8662	3707	5705	5721	10224	10224					0.05487476554662862
DSELRNMREVV	11	Unmodified	_DSELRNMREVV_					0	0	0		CON__Q6IME9	CON__Q6IME9	CON__Q6IME9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.8661193847656	3	449.894359	1346.66125	-0.17378	-7.8182E-05	-2.3575	-0.0010606	-2.5312	-0.0011388	449.8931825086827	47.944	0.44613	47.846	47.593	48.039	-0.097553					24	11	3	0	0	0	0.024739	1	4718	4718		22.562	8.4756	1	200700		+	8663	560	5706	5722	10225	10225					0.0017840688080923428
DSELRNMREVV	11	Unmodified	_DSELRNMREVV_					0	0	0		CON__Q6IME9	CON__Q6IME9	CON__Q6IME9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	449.894359	1346.66125	0.17961	8.0803E-05	-3.3635	-0.0015132	-3.1839	-0.0014324	449.8928189905159	48.108	0.37867	47.921	47.673	48.052	-0.18684	0.037569	-0.00048586	NaN	22.562	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165720		+	8664	560	5706	5722							0.0017840688080923428
DSEYWGDTV	9	Unmodified	_DSEYWGDTV_					0	0	0		ENST00000578547.1_1_17:26658777-26659262:-|nuORF;ENST00000580357.1_1_17:26658777-26662483:-|nuORF;ENST00000580991.1_1_17:26658777-26662483:-|nuORF	ENST00000578547.1_1_17:26658777-26659262:-|nuORF	ENST00000578547.1_1_17:26658777-26659262:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.23828125	2	536.216911	1070.41927	-2.5425	-0.0013633	-1.808	-0.00096949	-4.3505	-0.0023328	536.2154798780574	60.403	0.3292	60.482	60.318	60.647	0.078888					14	8	2	0	0	0	0.023596	1	6885	6885		63.306	11.007	1	155180			8665	17131	5707	5723	10226	10226					-0.11312300203667291
DSFFSQRFTI	10	Unmodified	_DSFFSQRFTI_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.8391418457031	3	416.540022	1246.59824	-1.0487	-0.00043681	-0.93407	-0.00038908	-1.9827	-0.00082588	416.53953960742655	28.388	0.47992	28.142	27.842	28.322	-0.24524					18	11	2	0	0	0	0.03519	1	1676	1676		31.634	13.103	1	98705	+		8666	28631	5708	5724	10227	10227					-0.015197908449181341
DSFNMYVPT	9	Unmodified	_DSFNMYVPT_					0	0	0			REV__ENSG00000186714|ENST00000335185|CCDC73	REV__ENSG00000186714|ENST00000335185|CCDC73	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.23828125	2	537.23405	1072.45355	-0.56385	-0.00030292	1.4263	0.00076626	0.86245	0.00046334	537.2343155919795	60.722	0.51834	60.516	60.254	60.772	-0.20599					22	12	2	0	0	0	0.024344	1	6775	6775		54.776	20.604	1	103930	+		8667	27879	5709	5725	10228	10228					-0.07978175316407032
DSFRPKIEA	9	Unmodified	_DSFRPKIEA_					0	0	0			REV__ENST00000473682.5_1_1:111738338-111738410:-|nuORF	REV__ENST00000473682.5_1_1:111738338-111738410:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2872314453125	2	531.782556	1061.55056	0.028414	1.511E-05	1.6114	0.0008569	1.6398	0.00087201	532.2870909917095	71.85	0.96747	71.575	71.188	72.155	-0.2751					37	21	2	0	0	0	0.42604	1	8381	8381		64.207	16.248	1	3107700	+		8668	33245	5710	5726	10229	10229					0.022245549549097632
DSFRPKIEA	9	Unmodified	_DSFRPKIEA_					0	0	0			REV__ENST00000473682.5_1_1:111738338-111738410:-|nuORF	REV__ENST00000473682.5_1_1:111738338-111738410:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.782556	1061.55056	0.13046	6.9379E-05	-0.57511	-0.00030583	-0.44464	-0.00023645	532.2861855395929	71.71	0.75893	71.504	71.225	71.984	-0.20613	-0.035825	-0.0012643	NaN	64.207	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1616000	+		8669	33245	5710	5726							0.022245549549097632
DSFSVLAKL	9	Unmodified	_DSFSVLAKL_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B;REV__POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2768249511719	2	490.276575	978.538597	-0.35404	-0.00017358	0.56159	0.00027533	0.20755	0.00010176	490.2766753273398	76.629	0.8391	76.361	76.048	76.887	-0.26806					47	19	4	0	0	0	0.27161	1	9094	9094		79.451	2.6769	1	745380	+		8670	36635;22828	5711	5727	10230	10230					0.04846938211710494
DSFVKRIRA	9	Unmodified	_DSFVKRIRA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7803344726562	2	546.31964	1090.62473	-0.70845	-0.00038704	-2.4953	-0.0013633	-3.2038	-0.0017503	546.819396910003	73.429	0.1161	73.239	73.16	73.276	-0.19027					4	2	2	0	0	0	0.024374	1	8616	8616		40.778	1.972	1	30197			8671	2800	5712	5728	10231	10231					0.08303942837073919
DSFWVKNEL	9	Unmodified	_DSFWVKNEL_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2776489257812	2	569.282389	1136.55022	-0.33859	-0.00019276	-0.79607	-0.00045319	-1.1347	-0.00064595	569.2817988523569	62.933	1.0644	62.749	62.473	63.537	-0.18386					60	30	3	0	0	0	0.16468	1	7078	7078		96.19	0	1	1490200			8672	8442	5713	5729	10232	10232					-0.012588647649408813
DSGAKKISVKT	11	Unmodified	_DSGAKKISVKT_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3294677734375	2	567.32987	1132.64519	0.34076	0.00019332	-0.47772	-0.00027103	-0.13696	-7.7703E-05	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0075	1	11238	11238		35.152	3.6222	1	4116000			8673	4316	5714	5730	10233	10233					0.08417068706239661
DSGCAHALRA	10	Unmodified	_DSGCAHALRA_					0	0	0			REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3077697753906	2	500.735083	999.455613	0.40699	0.0002038	-0.75061	-0.00037585	-0.34361	-0.00017206	500.7344967907394	72.996	0.53421	72.715	72.465	72.999	-0.28124					26	12	3	0	0	0	0.03519	1	8889	8889		19.997	0	1	304210	+		8674	19990	5715	5731	10234	10234					-0.04413701787950686
DSGESPPPKT	10	Unmodified	_DSGESPPPKT_					0	0	0			REV__ENSG00000105447|ENST00000253237|GRWD1	REV__ENSG00000105447|ENST00000253237|GRWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7595520019531	2	507.740554	1013.46655	1.9243	0.00097703	-0.44939	-0.00022817	1.4749	0.00074885	507.7400343651382	24.471	0.56183	24.29	24.028	24.59	-0.18089					29	12	4	0	0	0	0.03519	1	1014	1014		24.519	0.31644	1	285020	+		8675	21527	5716	5732	10235	10235					-0.0396402093266488
DSGESPPPKT	10	Unmodified	_DSGESPPPKT_					0	0	0			REV__ENSG00000105447|ENST00000253237|GRWD1	REV__ENSG00000105447|ENST00000253237|GRWD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.740554	1013.46655	-0.19689	-9.997E-05	1.2789	0.00064937	1.0821	0.0005494	507.74112040839464	24.617	0.4594	24.402	24.218	24.677	-0.2151	0.071533	0.0004153	NaN	24.519	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283940	+		8676	21527	5716	5732							-0.0396402093266488
DSGESPPPKT	10	Unmodified	_DSGESPPPKT_					0	0	0			REV__ENSG00000105447|ENST00000253237|GRWD1	REV__ENSG00000105447|ENST00000253237|GRWD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.740554	1013.46655	-0.28894	-0.00014671	1.5819	0.00080319	1.293	0.00065649	507.74119073339364	24.474	0.50548	24.299	24.048	24.554	-0.17484	-0.031191	0.00072294	NaN	24.519	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270690	+		8677	21527	5716	5732							-0.0396402093266488
DSGEYKCQ	8	Unmodified	_DSGEYKCQ_					0	0	0		ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2870178222656	2	465.1871	928.359646	-0.10738	-4.9954E-05	1.3131	0.00061085	1.2057	0.0005609	465.18714634116174	75.602	0.48209	75.329	75.06	75.542	-0.27266					18	11	3	0	0	0	0.027866	1	8929	8929		42.396	1.8235	1	67291			8678	8914	5717	5733	10236	10236					-0.10739894418691165
DSGPCCILTF	10	Unmodified	_DSGPCCILTF_					0	0	0			REV__ENST00000580011.1_1_17:62082347-62097946:-|nuORF	REV__ENST00000580011.1_1_17:62082347-62097946:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7720336914062	2	528.230453	1054.44635	-0.28513	-0.00015061	-0.89094	-0.00047062	-1.1761	-0.00062123	528.2299308930067	55.868	0.43642	55.652	55.372	55.808	-0.21607					16	11	2	0	0	0	0.03519	1	6025	6025		64.207	21.811	1	108840	+		8679	21754	5719	5734	10237	10237					-0.07869231188487902
DSGREVGSCT	10	Unmodified	_DSGREVGSCT_					0	0	0			REV__ENST00000556830.1_1_12:57559409-57560120:+|nuORF	REV__ENST00000556830.1_1_12:57559409-57560120:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.71435546875	2	505.714013	1009.41347	-1.0134	-0.00051249	0.58211	0.00029438	-0.43128	-0.00021811	505.7147543516341	29.365	1.4537	29.12	28.241	29.695	-0.24524					105	33	5	0	0	0	1.089	1	1776	1776		34.173	2.6427	1	1846100	+		8680	35047	5720	5735	10238	10238					-0.09085721986957651
DSGVDTLAVF	10	Unmodified	_DSGVDTLAVF_					0	0	0		nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.26409912109375	2	512.253297	1022.49204	-0.96731	-0.00049551	1.6129	0.00082623	0.64562	0.00033072	512.2539785907258	80.851	0.8518	80.7	80.385	81.237	-0.15168					47	20	3	0	0	0	0.03519	1	10051	10051		23.042	4.7181	1	771090			8681	7131	5721	5736	10239	10239					-0.018305464102240876
DSGVIFRQV	9	Unmodified	_DSGVIFRQV_					0	0	0			REV__ENSG00000117899|ENST00000261758|MESD	REV__ENSG00000117899|ENST00000261758|MESD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8367919921875	2	510.777274	1019.53999	-0.65033	-0.00033217	1.3947	0.0007124	0.7444	0.00038022	510.77805355505996	45.327	1.6189	45.178	44.628	46.247	-0.1488					58	46	2	0	0	0	0.024374	1	4492	4492		49.442	16.629	1	1146400	+		8682	22379	5722	5737	10240	10240					0.031005723004795982
DSGVIFRQV	9	Unmodified	_DSGVIFRQV_					0	0	0			REV__ENSG00000117899|ENST00000261758|MESD	REV__ENSG00000117899|ENST00000261758|MESD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.777274	1019.53999	-0.40616	-0.00020746	0.55478	0.00028337	0.14862	7.5913E-05	510.7776114200029	45.197	0.65015	45.241	44.93	45.58	0.043877	0.010722	2.3327E-05	NaN	49.442	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1238000	+		8683	22379	5722	5737							0.031005723004795982
DSGVIFRQV	9	Unmodified	_DSGVIFRQV_					0	0	0			REV__ENSG00000117899|ENST00000261758|MESD	REV__ENSG00000117899|ENST00000261758|MESD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.777274	1019.53999	-0.57771	-0.00029508	-0.34741	-0.00017745	-0.92512	-0.00047253	510.7771764302882	45.347	0.71801	45.247	44.672	45.39	-0.099445	0.017401	-0.00089831	NaN	49.442	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385490	+		8684	22379	5722	5737							0.031005723004795982
DSGVIFRQV	9	Unmodified	_DSGVIFRQV_					0	0	0			REV__ENSG00000117899|ENST00000261758|MESD	REV__ENSG00000117899|ENST00000261758|MESD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.777274	1019.53999	-0.23243	-0.00011872	-0.48272	-0.00024656	-0.71515	-0.00036528	510.7766330959463	45.485	0.57769	45.233	44.748	45.325	-0.25252	0.0028827	-0.0010365	NaN	49.442	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374560	+		8685	22379	5722	5737							0.031005723004795982
DSGVIFRQV	9	Unmodified	_DSGVIFRQV_					0	0	0			REV__ENSG00000117899|ENST00000261758|MESD	REV__ENSG00000117899|ENST00000261758|MESD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.777274	1019.53999	-0.56194	-0.00028702	-3.7277	-0.001904	-4.2896	-0.002191	510.7742024304536	45.479	0.76122	45.268	44.793	45.554	-0.21109	0.038489	-0.0043515	NaN	49.442	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609020	+		8686	22379	5722	5737							0.031005723004795982
DSGVLKSPII	10	Unmodified	_DSGVLKSPII_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|203|1|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|194|1|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|212|1|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|12;chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|60;chr5:90822097-90965415|211|21.16|0.18|6.88|+|2|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|44;chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|76;chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|58;chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|76;chr1:89418355-89420191|233|12.99|0.01|10.41|+|1|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|72;chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|45;chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|59	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|203|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|203|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.77490234375	2	514.802957	1027.59136	-0.91719	-0.00047217	1.5248	0.00078498	0.60762	0.00031281	514.8030690011467	69.159	0.45799	68.897	68.626	69.084	-0.26166					18	10	2	0	0	0	0.03519	1	7985	7985		51.193	12.387	1	260620			8687	289	5723	5738	10241	10241					0.0786689627452688
DSGVVPPHTV	10	Unmodified	_DSGVVPPHTV_					0	0	0			REV__ENSG00000168676|ENST00000304372|KCTD19	REV__ENSG00000168676|ENST00000304372|KCTD19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7768859863281	2	504.261456	1006.50836	-0.12712	-6.41E-05	1.5248	0.00076891	1.3977	0.00070481	504.26109806702834	73.641	0.34831	73.364	73.133	73.482	-0.2769					10	8	2	0	0	0	0.03519	1	8673	8673		19.104	0	1	38944	+		8688	26282	5724	5739	10242	10242					0.005365795465195333
DSGWAKLELFL	11	Unmodified	_DSGWAKLELFL_					0	0	0			REV__ENST00000493165.1_1_20:62710840-62711161:-|nuORF	REV__ENST00000493165.1_1_20:62710840-62711161:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	639.84326171875	2	639.840071	1277.66559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.917	1	99.912	99.412	100.41	-0.0050888								0	0	0	0.83179	1	12703	12703		59.931	13.474	1		+		8689	33757	5725	5740	10243	10243					0.037862393660361704
DSGYIDCW	8	Unmodified	_DSGYIDCW_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1;nc|ENSG00000064042|Q9UPQ0-7|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8970947265625	2	479.684193	957.353833	-0.11759	-5.6406E-05	0.4927	0.00023634	0.37511	0.00017993	479.6838268096837	32.267	0.25658	32.109	31.948	32.204	-0.15772					7	5	2	0	0	0	0.027866	1	2178	2178		18.324	6.1176	1	28529			8690	1266	5726	5741	10244	10244					-0.12654992930367825
DSHAVKRLRL	10	Unmodified	_DSHAVKRLRL_					0	0	0			REV__ENSG00000101558|ENST00000400000|VAPA	REV__ENSG00000101558|ENST00000400000|VAPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8564453125	2	597.856921	1193.69929	-0.90106	-0.00053871	-0.64256	-0.00038416	-1.5436	-0.00092287	598.357733895592	103.83	0.97852	103.71	103.29	104.27	-0.12928					48	27	3	0	0	0	1.1286	1	12923	12923		25.574	0	1	387740	+		8691	21243	5727	5742	10245	10245					0.11018705648439209
DSHELCLAPKT	11	Unmodified	_DSHELCLAPKT_					0	0	0		ENST00000519592.5_1_8:28196184-28196235:+|nuORF	ENST00000519592.5_1_8:28196184-28196235:+|nuORF	ENST00000519592.5_1_8:28196184-28196235:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.2039489746094	3	405.200901	1212.58087	0.19241	7.7963E-05	3.5587	0.001442	3.7511	0.0015199	405.20256789697453	60.757	0.51088	60.551	60.378	60.889	-0.20599					13	12	2	0	0	0	0.024739	1	6765	6765		35.178	10.946	1	86834			8692	15957	5728	5743	10246	10246					-0.01691454442243412
DSIAKARGGNI	11	Unmodified	_DSIAKARGGNI_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3016357421875	2	551.304187	1100.59382	-0.21843	-0.00012042	-3.1398	-0.001731	-3.3583	-0.0018514	551.3023615367912	97.796	1.9457	97.631	97.26	99.206	-0.1652					103	45	4	0	0	0	0.58492	1	12158	12158		70.816	1.1886	1	3964700			8693	7391	5729	5744	10247	10247					0.047547447321903746
DSIHVRMN	8	Unmodified	_DSIHVRMN_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.83660888671875	2	486.240001	970.465449	-0.37848	-0.00018403	-4.0215	-0.0019554	-4.4	-0.0021395	486.2379523262218	33.545	0.38454	33.345	33.171	33.555	-0.20019					21	9	3	0	0	0	0.027866	1	2428	2428		38.806	0	1	289460	+		8694	36665	5730	5745	10248	10248					-0.02096513782544207
DSIKFELD	8	Unmodified	_DSIKFELD_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.3070983886719	2	483.742565	965.470577	-0.89405	-0.00043249	0.35426	0.00017137	-0.5398	-0.00026112	483.7430225263906	81.422	0.53023	81.446	81.207	81.737	0.023903					22	12	3	0	0	0	0.027866	1	10088	10088		58.782	19.976	1	165590	+		8695	26560	5731	5746	10249	10249					-0.01353931438939071
DSIPFKLN	8	Unmodified	_DSIPFKLN_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.276611328125	2	467.255643	932.496732	0.15061	7.0374E-05	-0.3643	-0.00017022	-0.21369	-9.9847E-05	467.2553735431544	47.606	0.94553	47.336	46.874	47.819	-0.26939					54	25	3	0	0	0	0.027866	1	4686	4686		30.504	3.7075	1	1968800	+		8696	23832	5732	5747	10250	10250					0.02778382523183609
DSIPPDTLL	9	Unmodified	_DSIPPDTLL_					0	0	0		ENST00000599004.1_1_19:51302184-51302572:-|nuORF;ENST00000596655.1_1_19:51302184-51302277:-|nuORF	ENST00000599004.1_1_19:51302184-51302572:-|nuORF	ENST00000599004.1_1_19:51302184-51302572:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7606201171875	2	485.758215	969.501877	0.247	0.00011998	-0.16609	-8.0681E-05	0.080907	3.9301E-05	485.758006842451	72.415	1.3412	72.151	71.676	73.017	-0.26479					87	31	4	0	0	0	0.43973	1	8515	8515		63.306	2.3343	1	1662300			8697	17435	5733	5748	10251	10251					0.01590641595157649
DSKAITTSL	9	Unmodified	_DSKAITTSL_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;UGGT1|p.G926Dfs*4|1|0.05|ENSG00000136731|chr2:128161219-128161219|G/-|frameshift_variant	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.7403564453125	2	468.25584	934.497126	-0.66605	-0.00031188	-1.4997	-0.00070226	-2.1658	-0.0010141	468.256323054986	38.351	0.23553	38.172	38.035	38.27	-0.17929					9	6	2	0	0	0	0.024506	1	3152	3152		16.473	9.2798	1	59060			8698	5040	5734	5749	10252	10252					0.02725757452367361
DSKKTVKNPK	10	Unmodified	_DSKKTVKNPK_					0	0	0		L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense	L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense	L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|17|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	573.2860717773438	2	572.837862	1143.66117	0.10392	5.9526E-05	2.8233	0.0016173	2.9272	0.0016768	572.8393503972775	64.244	0.77665	64.29	63.939	64.715	0.045502					52	20	4	0	0	0	0.03519	1	7455	7455		22.58	0	1	1129400			8699	17839	5735	5750	10253	10253					0.09508774943151366
DSKRERTTV	9	Unmodified	_DSKRERTTV_					0	0	0		ENST00000343028.8_3_12:27127006-27127141:-|nuORF	ENST00000343028.8_3_12:27127006-27127141:-|nuORF	ENST00000343028.8_3_12:27127006-27127141:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.316650390625	2	546.293819	1090.57309	0.0017236	9.4161E-07	-0.21393	-0.00011687	-0.21221	-0.00011593	546.2935757752169	87.231	0.94577	87.253	86.927	87.873	0.021263					49	22	3	0	0	0	0.024397	1	10895	10895		31.53	17.393	1	677720			8700	12524	5736	5751	10254	10254					0.03142154352508442
DSKRKSVL	8	Unmodified	_DSKRKSVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.7796630859375	2	466.779816	931.545079	0.51831	0.00024194	-0.88367	-0.00041248	-0.36536	-0.00017054	466.7794058213806	19.22	0.98703	19.059	18.787	19.774	-0.16079					48	19	4	0	0	0	0.68164	1	406	406		68.787	8.4929	1	1900500			8701	7065	5737	5752	10255	10255					0.07656876163093784
DSKSIHTL	8	Unmodified	_DSKSIHTL_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7589111328125	2	450.742899	899.471246	-0.49797	-0.00022446	0.41856	0.00018866	-0.079414	-3.5795E-05	450.7430343928315	44.68	0.58441	44.68	44.314	44.898	0					39	16	3	0	0	0	0.027866	1	4285	4285		32.812	4.9302	1	496230	+		8702	20348	5738	5753	10256	10256					0.017489080007635494
DSKSKYVL	8	Unmodified	_DSKSKYVL_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.26068115234375	2	470.260925	938.507297	-0.069813	-3.283E-05	-0.55009	-0.00025869	-0.6199	-0.00029152	470.26083724593025	33.327	0.39188	33.127	32.855	33.247	-0.20019					21	9	3	0	0	0	0.30053	1	2365	2365		111.65	32.197	1	1144500			8703	2231	5739	5754	10257	10257					0.035583651776164515
DSKVDPILI	9	Unmodified	_DSKVDPILI_					0	0	0		ENSG00000176928|ENST00000652361|GCNT4	ENSG00000176928|ENST00000652361|GCNT4	ENSG00000176928|ENST00000652361|GCNT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2869873046875	2	500.289682	998.564812	0.23721	0.00011867	-0.50258	-0.00025143	-0.26537	-0.00013276	500.28935987923074	89.526	1.0684	89.542	89.215	90.284	0.015907					60	25	5	0	0	0	0.18915	1	11227	11227		90.777	5.8611	1	958880			8704	8689	5740	5755	10258	10258					0.06547207383187015
DSLCLLLSLI	10	Unmodified	_DSLCLLLSLI_					0	0	0			REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.791015625	2	545.314843	1088.61513	0.32823	0.00017899	-1.6786	-0.00091534	-1.3503	-0.00073635	545.3136121288144	59.25	0.40557	59.25	58.965	59.37	0					17	10	2	0	0	0	0.03519	1	6728	6728		40.778	0	1	264460	+		8705	29196	5741	5756	10259	10259					0.07436993716714824
DSLDQVEII	9	Unmodified	_DSLDQVEII_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2681884765625	2	516.266404	1030.51826	-0.80704	-0.00041665	1.4589	0.00075316	0.65181	0.00033651	516.2671056406949	31.1	1.9277	31.169	30.04	31.967	0.068962					153	46	5	0	0	0	0.72494	1	2030	2030		44.377	1.981	1	6164700			8706	745	5742	5757	10260	10260					0.004217227612343777
DSLGQVFIRTL	11	Unmodified	_DSLGQVFIRTL_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.7331848144531	3	416.903072	1247.68739	-0.75251	-0.00031372	1.9755	0.00082361	1.223	0.00050988	416.903824693764	39.275	1.2681	39.11	38.795	40.063	-0.16459					74	33	4	0	0	0	0.02476	1	3342	3342		45.908	0	1	1264000			8707	9909	5743	5758	10261	10261					0.07345044114595112
DSLISPFSAKS	11	Unmodified	_DSLISPFSAKS_					0	0	0			REV__ENSG00000158435|ENST00000289382|CNOT11	REV__ENSG00000158435|ENST00000289382|CNOT11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	577.298583984375	2	576.300778	1150.587	-0.45243	-0.00026073	-0.48517	-0.0002796	-0.9376	-0.00054034	576.3003790348299	92.881	0.59584	92.888	92.587	93.183	0.0077286					16	13	2	0	0	0	0.024741	1	11688	11688		23.523	1.8204	1	55135	+		8708	25195	5744	5759	10262	10262					0.01773387060939058
DSLLCFDVV	9	Carbamidomethyl (C)	_DSLLC(Carbamidomethyl (C))FDVV_	DSLLC(1)FDVV		DSLLC(58)FDVV		0	1	0			REV__nc|ENSG00000163071|Q8TC71-2|SPATA18	REV__nc|ENSG00000163071|Q8TC71-2|SPATA18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2594604492188	2	534.257525	1066.5005	-0.44731	-0.00023898	3.1077	0.0016603	2.6604	0.0014213	534.2592292246243	66.498	1.0608	66.25	65.45	66.511	-0.24839					68	27	4	0	0	0	0.52323	1	7615	7615		57.811	8.3697	1	6256200	+		8709	25528	5745	5760	10263	10263	336				-0.0300931576525727
DSLLEYEKTK	10	Unmodified	_DSLLEYEKTK_					0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.9156494140625	3	409.215204	1224.62378	0.31098	0.00012726	0.73712	0.00030164	1.0481	0.0004289	409.2154495853156	32.062	0.68711	31.825	31.529	32.216	-0.23667					44	15	4	0	0	0	0.03519	1	2202	2202		9.2118	0	1	811750	+		8710	26501	5746	5761	10264	10264					0.0204563888685243
DSLLMLFY	8	Unmodified	_DSLLMLFY_					0	0	0		ENST00000397641.7_1_22:31321876-31321963:-|nuORF	ENST00000397641.7_1_22:31321876-31321963:-|nuORF	ENST00000397641.7_1_22:31321876-31321963:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.29583740234375	2	501.254254	1000.49396	-0.29452	-0.00014763	0.4386	0.00021985	0.14409	7.2225E-05	501.2544278950554	26.239	0.58018	26.239	25.867	26.447	0					24	13	2	0	0	0	0.027866	1	1311	1311		39.021	1.993	1	75316			8711	13599	5747	5762	10265	10265					-0.006272089259823588
DSLPGCPSPPC	11	Unmodified	_DSLPGCPSPPC_					0	0	0		ENST00000576723.5_1_17:7852346-7852749:+|nuORF	ENST00000576723.5_1_17:7852346-7852749:+|nuORF	ENST00000576723.5_1_17:7852346-7852749:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3115844726562	2	536.725535	1071.43652	-1.5189	-0.00081523	0.45044	0.00024176	-1.0685	-0.00057347	536.7260682015802	34.332	0.30441	34.382	34.213	34.518	0.050251					10	7	2	0	0	0	0.024735	1	2485	2485		19.997	9.1312	1	61216			8712	17109	5748	5763	10266	10266					-0.09634419193866961
DSLPKPIQL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DSLPKPIQL_					1	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8019409179688	2	526.802957	1051.59136	-0.9052	-0.00047686	0.54067	0.00028482	-0.36453	-0.00019204	526.8031501488817	76.288	0.8439	76.288	75.956	76.799	0					54	20	3	0	0	0	0.53979	1	9420	9420		56.721	7.2795	1	3157600	+		8713	25109	5749	5764	10267	10267					0.06762896274540253
DSLPVDRAAK	10	Unmodified	_DSLPVDRAAK_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2882690429688	2	536.293288	1070.57202	-0.71762	-0.00038486	1.3454	0.00072152	0.62775	0.00033666	536.2936271219403	23.798	0.75817	23.874	23.604	24.362	0.076239					18	16	2	0	0	0	0.03519	1	920	920		44.377	8.7589	1	22045	+		8714	28222	5750	5765	10268	10268					0.039559399836207376
DSLPVDRAAK	10	Unmodified	_DSLPVDRAAK_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.293288	1070.57202	-1.2917	-0.00069273	2.5274	0.0013554	1.2357	0.00066271	536.2945513804995	23.99	0.60551	23.942	23.571	24.177	-0.047148	0.034148	0.00048919	NaN	44.377	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26286	+		8715	28222	5750	5765							0.039559399836207376
DSLQRLFLI	9	Unmodified	_DSLQRLFLI_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;AP5Z1|p.Q554Rfs*14|1|0.23|ENSG00000242802|chr7:4788902-4788902|C/-|frameshift_variant;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.79345703125	2	552.824224	1103.63389	-0.29169	-0.00016125	-0.55282	-0.00030562	-0.84451	-0.00046687	552.8238141416365	66.252	1.2482	66.011	65.126	66.375	-0.24145					25	14	2	0	0	0	0.024506	1	7594	7594		16.473	0	1	448460			8716	10802	5751	5766	10269	10269					0.08622291402775772
DSLQVSPKELH	11	Unmodified	_DSLQVSPKELH_					0	0	0			REV__nc|ENSG00000211798|A0A075B6X5|TRAV18	REV__nc|ENSG00000211798|A0A075B6X5|TRAV18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	627.3529052734375	2	626.830234	1251.64592	0.38933	0.00024404	4.4048	0.0027611	4.7942	0.0030051	627.3345607352865	77.075	0.29191	76.807	76.595	76.887	-0.26807					9	6	2	0	0	0	0.024745	1	9135	9135		41.427	0	1	99904	+		8717	37109	5752	5767	10270	10270					0.030158633552900938
DSLRVLLK	8	Unmodified	_DSLRVLLK_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.77728271484375	2	472.300384	942.586216	-0.59694	-0.00028193	2.5093	0.0011852	1.9124	0.00090323	472.30112205578996	29.19	0.87311	29.19	28.655	29.528	0					32	21	3	0	0	0	0.027866	1	1755	1755		68.787	7.8149	1	222230	+		8718	26057	5753	5768	10271	10271					0.11262637202571568
DSLRVLLK	8	Unmodified	_DSLRVLLK_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.300384	942.586216	0.22418	0.00010588	0.31097	0.00014687	0.53515	0.00025275	472.3002514173818	29.014	0.46201	29.093	28.866	29.328	0.079494	-0.068215	-0.00098533	NaN	68.787	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255530	+		8719	26057	5753	5768							0.11262637202571568
DSLRWPKR	8	Unmodified	_DSLRWPKR_					0	0	0		ENST00000369486.7_1_1:117150701-117150863:-|nuORF	ENST00000369486.7_1_1:117150701-117150863:-|nuORF	ENST00000369486.7_1_1:117150701-117150863:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2973022460938	2	529.298707	1056.58286	-0.22091	-0.00011693	-1.9828	-0.0010495	-2.2038	-0.0011664	529.2974915684347	106.43	0.70708	106.43	106.04	106.75	-0.0013199					53	23	4	0	0	0	1.0574	1	13615	13615		24.203	2.2429	1	1408400			8720	12923	5754	5769	10272	10272					0.05683387148565089
DSLVKVLKL	9	Unmodified	_DSLVKVLKL_					0	0	0			REV__nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	REV__nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8340148925781	2	507.831517	1013.64848	0.15322	7.7812E-05	3.6445	0.0018508	3.7977	0.0019286	507.8332675843573	105.03	0.43443	104.9	104.68	105.12	-0.12444					35	13	3	0	0	0	0.80003	1	13080	13080		39.253	0.23134	1	258220	+		8721	23248	5755	5770	10273	10273					0.14220363550907678
DSLVRNTNL	9	Unmodified	_DSLVRNTNL_					0	0	0			REV__nc|ENSG00000186088|A4D1B5-2|GSAP	REV__nc|ENSG00000186088|A4D1B5-2|GSAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7953491210938	2	516.277638	1030.54072	0.10173	5.2519E-05	2.653	0.0013697	2.7547	0.0014222	516.2790723501224	23.403	0.82665	23.201	22.92	23.747	-0.20193					40	18	3	0	0	0	0.024436	1	1000	1000		38.806	10.924	1	329360	+		8722	37024	5756	5771	10274	10274					0.026673669495039576
DSLVVLFAQV	10	Unmodified	_DSLVVLFAQV_					0	0	0		nc|ENSG00000143499|Q9NRG4-2|SMYD2;ENST00000471645.5_1_1:214454597-214504559:+|nuORF;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENSG00000143499|ENST00000366957|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	nc|ENSG00000143499|Q9NRG4-2|SMYD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.81298828125	2	545.810782	1089.60701	-1.5334	-0.00083692	2.8431	0.0015518	1.3097	0.00071486	545.8126020667369	91.474	1.5267	91.474	91.011	92.537	0					93	36	4	0	0	0	0.66532	1	11634	11634		69.628	14.851	1	3855000			8723	5656	5757	5772	10275	10275					0.0657918279155183
DSLYWSVK	8	Unmodified	_DSLYWSVK_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7427978515625	2	499.2531	996.491647	-0.029611	-1.4784E-05	-0.69871	-0.00034883	-0.72832	-0.00036362	499.25236460350055	56.932	0.38705	56.707	56.464	56.851	-0.2248					13	9	2	0	0	0	0.027866	1	6178	6178		30.504	0	1	280580			8724	719	5758	5773	10276	10276					-0.006739213394212129
DSMCCFPE	8	Unmodified	_DSMCCFPE_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B;ENST00000490303.5_1_3:182583321-182631816:+|nuORF	ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2635192871094	2	466.153357	930.292161	-0.17485	-8.1506E-05	1.8404	0.00085789	1.6655	0.00077638	466.1545512840764	37.891	0.21596	37.712	37.594	37.809	-0.17929					6	5	2	0	0	0	0.027866	1	3076	3076		26.796	19.106	1	135540			8725	1209	5759	5774	10277	10277					-0.1757738394550188
DSMLGGLEQEL	11	Unmodified	_DSMLGGLEQEL_					0	0	0		ENST00000530561.5_1_11:58294929-58321330:-|nuORF;ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.281494140625	2	596.281728	1190.5489	-0.23008	-0.00013719	-1.9283	-0.0011498	-2.1584	-0.001287	596.2804662078306	102.93	4.4498	102.93	100.72	105.17	-0.0046082					241	111	3	0	0	0	0.87596	1	13057	13057		53.089	15.277	1	301850			8726	3013	5760	5775	10278	10278					-0.03874866916021347
DSMLLALQLS	10	Unmodified	_DSMLLALQLS_					0	0	0		ENST00000392911.6_2_12:102517666-102542036:+|nuORF;nc|ENSG00000185480|Q9NWS1-4|PARPBP;nc|ENSG00000185480|Q9NWS1-3|PARPBP;ENST00000541668.5_1_12:102514215-102548625:+|nuORF;ENST00000392914.3_1_12:102517666-102545686:+|nuORF;nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;ENSG00000185480|ENST00000327680|PARPBP	ENST00000392911.6_2_12:102517666-102542036:+|nuORF	ENST00000392911.6_2_12:102517666-102542036:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.794275	1089.574	-1.3105	-0.00071528	2.5424	0.0013876	1.2319	0.00067235	546.2965227892438	90.577	0.25468	90.422	90.348	90.602	-0.1552					7	5	2	0	0	0	0.03519	1	11103	11103		31.53	3.6476	1	129360			8727	9442	5761	5776	10279	10279					0.0327923267720962
DSMLSSMIF	9	Unmodified	_DSMLSSMIF_					0	0	0			REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.290283203125	2	515.732828	1029.4511	0.040654	2.0967E-05	-0.92467	-0.00047689	-0.88402	-0.00045592	515.7318461970084	70.192	0.61572	69.941	69.566	70.182	-0.25063					20	14	2	0	0	0	0.024535	1	8190	8190		18.324	5.3652	1	44418	+		8728	36078	5762	5777	10280	10280					-0.062443470457083095
DSNGSVQII	9	Unmodified	_DSNGSVQII_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7377624511719	2	466.737814	931.461075	-0.56035	-0.00026153	0.058982	2.7529E-05	-0.50136	-0.00023401	466.73781347457845	45.095	0.92117	45.095	44.758	45.679	0					74	26	4	0	0	0	0.35646	1	4377	4377		68.787	0	1	9434300			8729	7061	5763	5778	10281	10281					-0.007396997244541126
DSNGSVQII	9	Unmodified	_DSNGSVQII_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.737548828125	2	466.737814	931.461075	-0.48767	-0.00022762	0.15992	7.4641E-05	-0.32775	-0.00015297	466.73784110464123	45.208	0.9959	45.059	44.763	45.759	-0.1488					63	28	4	0	0	0	0.16468	1	4366	4366		96.19	2.995	1	9270800			8730	7061	5763	5778	10282	10282					-0.007396997244541126
DSNGTTSRLL	10	Unmodified	_DSNGTTSRLL_					0	0	0			REV__ENST00000427980.6_1_16:71879975-71883657:+|nuORF	REV__ENST00000427980.6_1_16:71879975-71883657:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.812744140625	2	532.272552	1062.53055	-0.11215	-5.9692E-05	2.4999	0.0013306	2.3877	0.0012709	532.2744521350145	100.41	0.31851	100.24	100.18	100.5	-0.17088					10	7	2	0	0	0	0.03519	1	12439	12439		40.778	6.6056	1	143760	+		8731	32310	5764	5779	10283	10283					0.0017875922428629565
DSNLQKASA	9	Unmodified	_DSNLQKASA_					0	0	0		nc|ENSG00000152672|Q8N1N0-2|CLEC4F;ENSG00000152672|ENST00000272367|CLEC4F	nc|ENSG00000152672|Q8N1N0-2|CLEC4F	nc|ENSG00000152672|Q8N1N0-2|CLEC4F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.6085205078125	2	467.235439	932.456324	1.01	0.00047192	2.4423	0.0011412	3.4524	0.0016131	467.2364564850883	100.51	0.98244	100.51	100.17	101.15	-0.0054398					27	23	2	0	0	0	0.024323	1	12777	12777		20.947	0	1	133880			8732	6292	5765	5780	10284	10284					-0.012605838672357095
DSNYGSGGLV	10	Unmodified	_DSNYGSGGLV_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7673645019531	2	484.719621	967.42469	-0.86709	-0.00042029	-3.8786	-0.00188	-4.7457	-0.0023003	484.7181171391418	34.89	0.2885	34.94	34.838	35.127	0.050255					10	7	2	0	0	0	0.03519	1	2575	2575		69.628	20.186	1	35721	+		8733	20738	5766	5781	10285	10285					-0.06032576621169028
DSPALEVPLPT	11	Unmodified	_DSPALEVPLPT_					0	0	0		ENST00000552162.5_1_17:40282572-40288397:-|nuORF	ENST00000552162.5_1_17:40282572-40288397:-|nuORF	ENST00000552162.5_1_17:40282572-40288397:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7781982421875	2	569.803154	1137.59175	0.098036	5.5861E-05	0.93983	0.00053552	1.0379	0.00059138	569.803747027061	53.314	0.34047	53.187	52.988	53.329	-0.12705					16	8	3	0	0	0	0.024762	1	5600	5600		8.2351	0	1	207340			8734	16617	5767	5782	10286	10286					0.028462712037025995
DSPALEVPLPT	11	Unmodified	_DSPALEVPLPT_					0	0	0		ENST00000552162.5_1_17:40282572-40288397:-|nuORF	ENST00000552162.5_1_17:40282572-40288397:-|nuORF	ENST00000552162.5_1_17:40282572-40288397:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	569.803154	1137.59175	0.12643	7.2038E-05	1.489	0.00084844	1.6154	0.00092048	569.8043948136714	53.563	0.43853	53.305	53.039	53.477	-0.25838	0.068372	0.00045813	NaN	12.812	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266520			8735	16617	5767	5782							0.028462712037025995
DSPALEVPLPT	11	Unmodified	_DSPALEVPLPT_					0	0	0		ENST00000552162.5_1_17:40282572-40288397:-|nuORF	ENST00000552162.5_1_17:40282572-40288397:-|nuORF	ENST00000552162.5_1_17:40282572-40288397:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	569.803154	1137.59175	-0.081799	-4.6609E-05	1.0963	0.00062469	1.0145	0.00057808	569.8033858278125	53.415	0.37679	53.218	52.973	53.35	-0.19722	-0.018526	1.0629E-05	NaN	12.812	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188740			8736	16617	5767	5782							0.028462712037025995
DSPDGEDDRV	10	Unmodified	_DSPDGEDDRV_					0	0	0		nc|ENSG00000187764|Q92854-2|SEMA4D;ENSG00000187764|ENST00000422704|SEMA4D	nc|ENSG00000187764|Q92854-2|SEMA4D	nc|ENSG00000187764|Q92854-2|SEMA4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7799072265625	2	552.725632	1103.43671	-0.9239	-0.00051066	4.2809	0.0023662	3.357	0.0018555	552.728022701789	45.305	0.37228	45.156	44.974	45.346	-0.1488					18	10	2	0	0	0	0.03519	1	4388	4388		27.882	5.3026	1	284700			8737	9657	5768	5783	10287	10287					-0.11087004668661393
DSPEVKKSV	9	Unmodified	_DSPEVKKSV_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2652282714844	2	494.769114	987.523675	-0.15694	-7.765E-05	1.8523	0.00091645	1.6953	0.0008388	494.7701709927343	74.752	0.45809	74.477	74.22	74.678	-0.27573					16	10	2	0	0	0	0.024021	1	8817	8817		68.787	0	1	87159	+		8738	22308	5769	5784	10288	10288					0.029414463437205995
DSPLLVRFA	9	Unmodified	_DSPLLVRFA_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7452392578125	2	509.290017	1016.56548	-1.3219	-0.00067324	0.12524	6.3782E-05	-1.1967	-0.00060945	509.2902766253898	38.839	0.1496	38.866	38.81	38.96	0.027275					5	3	2	0	0	0	0.024294	1	3244	3244		37.159	0	1	114360	+		8739	25914	5770	5785	10289	10289					0.05786046822890967
DSPPPSWTG	9	Unmodified	_DSPPPSWTG_					0	0	0		SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|55|2|anti-sense	SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|55|2|anti-sense	SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|55|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2878112792969	2	472.211432	942.408311	0.19089	9.0142E-05	1.5483	0.00073113	1.7392	0.00082127	472.2113694091523	94.17	0.39915	94.17	94.032	94.432	-0.00022888					14	9	2	0	0	0	0.024381	1	11955	11955		37.159	0	1	94580			8740	37984	5771	5786	10290	10290					-0.06519657787271171
DSPSEHTDTER	11	Unmodified	_DSPSEHTDTER_					0	0	0		nc|ENSG00000028277|P09086-4|POU2F2;nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;ENSG00000028277|ENST00000692977|POU2F2;ENST00000530982.7_1_19:42603618-42636563:-|nuORF	nc|ENSG00000028277|P09086-4|POU2F2	nc|ENSG00000028277|P09086-4|POU2F2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	637.2683715820312	2	637.268195	1272.52184	-0.81877	-0.00052178	1.2116	0.00077213	0.39284	0.00025035	637.2690837353263	34.68	1.0236	34.494	34.158	35.182	-0.18524					70	25	4	0	0	0	0.78452	1	2571	2571		49.536	0	1	6509800			8741	1003	5772	5787	10291	10291					-0.10352259202863934
DSPYIRRA	8	Unmodified	_DSPYIRRA_					0	0	0			REV__nc|ENSG00000274391|P56180-4|TPTE	REV__nc|ENSG00000274391|P56180-4|TPTE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.27093505859375	2	489.261791	976.509028	-0.86453	-0.00042298	1.7656	0.00086384	0.90107	0.00044086	489.2635406858128	38.485	0.36523	38.485	38.356	38.721	0					14	8	3	0	0	0	0.027866	1	3257	3257		29.15	0	1	142200	+		8742	29183	5773	5788	10292	10292					0.01983418986230845
DSQEQQPKV	9	Unmodified	_DSQEQQPKV_					0	0	0			REV__ENSG00000223611|ENST00000486479|SUPT20HL2;REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2866821289062	2	529.759278	1057.504	0.14225	7.5356E-05	1.546	0.00081903	1.6883	0.00089439	529.7599526026586	85.642	0.92881	85.447	84.967	85.895	-0.19508					32	21	2	0	0	0	0.024319	1	10347	10347		31.53	9.5699	1	401880	+		8743	28855;28853	5774	5789	10293	10293					-0.022449296670401964
DSQKKRKK	8	Unmodified	_DSQKKRKK_					0	0	0		chr3:182848557-182849180|109|22.14|0.28|6.33|+|2|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|13	chr3:182848557-182849180|109|22.14|0.28|6.33|+|2|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|13	chr3:182848557-182849180|109|22.14|0.28|6.33|+|2|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7452392578125	2	509.311815	1016.60908	-1.4499	-0.00073846	-2.3295	-0.0011865	-3.7795	-0.0019249	509.3106683747725	38.085	1.7763	38.112	37.184	38.96	0.027279					73	48	2	0	0	0	0.027866	1	3244	3244		24.203	5.8783	1	293900			8744	391	5775	5790	10294	10294					0.10143656320042282
DSQKKRKK	8	Unmodified	_DSQKKRKK_					0	0	0		chr3:182848557-182849180|109|22.14|0.28|6.33|+|2|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|13	chr3:182848557-182849180|109|22.14|0.28|6.33|+|2|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|13	chr3:182848557-182849180|109|22.14|0.28|6.33|+|2|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|13	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.311815	1016.60908	-1.0137	-0.00051628	-2.6476	-0.0013485	-3.6613	-0.0018647	509.31037782178623	37.953	1.4629	37.87	37.144	38.607	-0.082516	-0.12082	-0.00012073	NaN	17.365	66	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287500			8745	391	5775	5790							0.10143656320042282
DSQKVKSDFHV	11	Unmodified	_DSQKVKSDFHV_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	645.3271484375	2	645.327859	1288.64116	-2.1871	-0.0014114	0.34241	0.00022097	-1.8447	-0.0011904	645.3279912444518	61.583	1.0851	61.369	61.083	62.168	-0.21375					85	26	4	0	0	0	0.98542	1	6908	6908		40.058	0.80534	1	1414700	+		8746	25914	5776	5791	10295	10295					0.00838979212517188
DSQKVKSDFHV	11	Unmodified	_DSQKVKSDFHV_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	645.327859	1288.64116	1.147	0.00074019	-3.5773	-0.0023085	-2.4303	-0.0015683	645.3254638997046	61.34	0.86636	61.34	61.108	61.974	0	-0.012164	-0.0024482	NaN	40.058	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	746850	+		8747	25914	5776	5791							0.00838979212517188
DSQKVKSDFHV	11	Unmodified	_DSQKVKSDFHV_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	645.327859	1288.64116	1.434	0.00092542	-3.792	-0.0024471	-2.358	-0.0015217	645.3253195708787	61.5	0.79176	61.274	61.082	61.874	-0.22663	-0.078128	-0.0027253	NaN	40.058	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597290	+		8748	25914	5776	5791							0.00838979212517188
DSQKVKSDFHV	11	Unmodified	_DSQKVKSDFHV_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	645.327859	1288.64116	0.47157	0.00030432	-2.6149	-0.0016875	-2.1433	-0.0013831	645.3260234390439	61.223	0.8611	61.294	61.095	61.956	0.071125	-0.057934	-0.001206	NaN	40.058	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706430	+		8749	25914	5776	5791							0.00838979212517188
DSQKVKSDFHV	11	Unmodified	_DSQKVKSDFHV_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	645.327859	1288.64116	-2.1871	-0.0014114	0.34241	0.00022097	-1.8447	-0.0011904	645.3279912444518	61.583	1.0851	61.369	61.083	62.168	-0.21375	0.017008	0.0026108	NaN	40.058	85	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1414700	+		8750	25914	5776	5791							0.00838979212517188
DSQKVKSDFHV	11	Unmodified	_DSQKVKSDFHV_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	645.327859	1288.64116	-0.74092	-0.00047814	-1.2302	-0.00079389	-1.9711	-0.001272	645.3269847879743	61.708	1.1601	61.451	61.091	62.251	-0.25725	0.098966	0.00058113	NaN	40.058	86	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1949800	+		8751	25914	5776	5791							0.00838979212517188
DSQLISPFL	9	Unmodified	_DSQLISPFL_					0	0	0			REV__ENST00000336505.10_1_9:127783037-127789160:-|nuORF	REV__ENST00000336505.10_1_9:127783037-127789160:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.27471923828125	2	510.274032	1018.53351	0.84661	0.000432	-0.47768	-0.00024375	0.36893	0.00018825	510.2735046597124	70.94	0.97894	70.647	70.368	71.347	-0.29291					50	23	4	0	0	0	0.48817	1	8542	8542		60.118	3.3972	1	1448500	+		8752	30548	5777	5792	10296	10296					0.02498634349092299
DSQLISPFL	9	Unmodified	_DSQLISPFL_					0	0	0			REV__ENST00000336505.10_1_9:127783037-127789160:-|nuORF	REV__ENST00000336505.10_1_9:127783037-127789160:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.27520751953125	2	510.274032	1018.53351	-0.24483	-0.00012493	0.39387	0.00020098	0.14904	7.6051E-05	510.27389802744034	70.72	1.1564	70.731	70.423	71.579	0.011353					52	28	4	0	0	0	0.43628	1	8465	8465		63.534	13.998	1	1459800	+		8753	30548	5777	5792	10297	10297					0.02498634349092299
DSQLKAMVQ	9	Unmodified	_DSQLKAMVQ_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.80780029296875	2	510.263142	1018.51173	-0.88589	-0.00045204	-3.0268	-0.0015445	-3.9127	-0.0019965	510.2615749219105	68.923	0.86591	68.661	68.26	69.126	-0.26165					32	20	2	0	0	0	0.024466	1	7944	7944		39.253	3.6345	1	238390			8754	3130	5778	5793	10298	10298					0.0032150632887351094
DSQLTSVKSV	10	Unmodified	_DSQLTSVKSV_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2550048828125	2	532.285128	1062.5557	-0.52112	-0.00027738	-1.8061	-0.00096137	-2.3272	-0.0012388	532.2843502717399	41.077	0.62031	40.942	40.674	41.294	-0.13553					23	15	2	0	0	0	0.03519	1	3572	3572		67.494	8.7117	1	283980			8755	10614	5779	5794	10299	10299					0.026928140268637435
DSQRQLLS	8	Unmodified	_DSQRQLLS_					0	0	0			REV__ENSG00000172244|ENST00000306862|C5orf34	REV__ENSG00000172244|ENST00000306862|C5orf34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7784729003906	2	473.751256	945.487959	-0.20948	-9.9243E-05	2.6621	0.0012612	2.4526	0.0011619	473.75331072311945	23.099	0.24648	23.175	23.026	23.272	0.076241					10	5	2	0	0	0	0.027866	1	820	820		44.117	0	1	23655	+		8756	26651	5780	5795	10300	10300					0.013034088867243554
DSQSSRSLL	9	Unmodified	_DSQSSRSLL_					0	0	0			REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7557678222656	2	496.753995	991.493438	0.47901	0.00023795	3.7621	0.0018689	4.2411	0.0021068	496.7557130187472	67.551	0.93532	67.551	67.205	68.14	0					62	23	4	0	0	0	0.56934	1	8064	8064		54.776	1.4249	1	2739000	+		8757	33157	5781	5796	10301	10301					-0.002649123214609972
DSQSSRSLL	9	Unmodified	_DSQSSRSLL_					0	0	0			REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.753995	991.493438	0.075629	3.7569E-05	4.2821	0.0021271	4.3577	0.0021647	496.75596274007455	67.875	0.94822	67.586	67.307	68.255	-0.28835	-0.062229	0.00019799	NaN	54.776	58	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2657200	+		8758	33157	5781	5796							-0.002649123214609972
DSQSSRSLL	9	Unmodified	_DSQSSRSLL_					0	0	0			REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.753995	991.493438	0.35525	0.00017647	3.8994	0.001937	4.2547	0.0021135	496.7557558385556	67.616	0.81285	67.64	67.31	68.123	0.023911	-0.0086776	-0.00018219	NaN	54.776	55	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2841900	+		8759	33157	5781	5796							-0.002649123214609972
DSQSSRSLL	9	Unmodified	_DSQSSRSLL_					0	0	0			REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	REV__ENST00000470435.5_1_7:144047851-144051157:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.753995	991.493438	0.27146	0.00013485	8.1963	0.0040715	8.4677	0.0042064	496.75620098407074	68.051	0.24147	67.817	67.636	67.877	-0.23376	0.16865	0.0040868	NaN	54.776	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61122	+		8760	33157	5781	5796							-0.002649123214609972
DSQTCSLEL	9	Unmodified	_DSQTCSLEL_					0	0	0		ENSG00000111886|ENST00000402938|GABRR2;nc|ENSG00000111886|P28476-2|GABRR2	ENSG00000111886|ENST00000402938|GABRR2	ENSG00000111886|ENST00000402938|GABRR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25018310546875	2	498.221139	994.427726	-0.69818	-0.00034785	3.5905	0.0017889	2.8923	0.001441	498.2222506170496	25.641	0.32756	25.414	25.19	25.517	-0.22683					14	7	4	0	0	0	0.024397	1	1223	1223		47.657	10.498	1	112250			8761	3156	5782	5797	10302	10302					-0.06971069558687759
DSQYLKLPA	9	Unmodified	_DSQYLKLPA_					0	0	0			REV__ENST00000510786.1_1_4:164449856-164449955:-|nuORF	REV__ENST00000510786.1_1_4:164449856-164449955:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2964477539062	2	517.779482	1033.54441	0.18027	9.334E-05	-0.018754	-9.7107E-06	0.16152	8.3629E-05	517.7790099099288	78.843	0.68572	78.687	78.212	78.897	-0.15591					28	15	3	0	0	0	0.024323	1	9352	9352		35.618	0	1	115620	+		8762	34110	5783	5798	10303	10303					0.028980367233771176
DSRCGDMS	8	Unmodified	_DSRCGDMS_					0	0	0		ENST00000609682.1_1_3:101396927-101397152:+|nuORF	ENST00000609682.1_1_3:101396927-101397152:+|nuORF	ENST00000609682.1_1_3:101396927-101397152:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7721862792969	2	435.657652	869.300751	-0.4709	-0.00020515	1.833	0.00079857	1.3621	0.00059342	435.65857283543374	25.405	0.15913	25.405	25.285	25.445	0					5	3	2	0	0	0	0.027866	1	1199	1199		12.959	0.75233	1	14410			8763	17609	5784	5799	10304	10304					-0.13912693984661928
DSREERKN	8	Unmodified	_DSREERKN_					0	0	0		ENST00000455364.1_3_1:27115459-27117340:+|nuORF	ENST00000455364.1_3_1:27115459-27117340:+|nuORF	ENST00000455364.1_3_1:27115459-27117340:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2393188476562	2	517.254694	1032.49483	0.65389	0.00033823	3.2935	0.0017036	3.9474	0.0020418	517.2563114822794	78.091	1.2776	77.849	77.49	78.767	-0.24232					44	29	3	0	0	0	0.027866	1	9403	9403		30.504	8.5438	1	570590			8764	14577	5785	5800	10305	10305					-0.02011278232703262
DSRKPVILEV	10	Unmodified	_DSRKPVILEV_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;DNAJC13|p.Y2206Tfs*27|1|0.1|ENSG00000138246|chr3:132531087-132531087|A/-|frameshift_variant;DNAJC13|p.S1189Lfs*5|1|0.23|ENSG00000138246|chr3:132490990-132490990|T/-|frameshift_variant	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.2619018554688	2	578.340238	1154.66592	-0.24085	-0.00013929	3.317	0.0019184	3.0762	0.0017791	578.3424218490885	75.571	0.23738	75.298	75.186	75.423	-0.27266					8	5	2	0	0	0	0.03519	1	8924	8924		35.152	12.11	1	102960			8765	656	5786	5801	10306	10306					0.09477659085905543
DSRNLVPNS	9	Unmodified	_DSRNLVPNS_					0	0	0			REV__ENST00000555806.5_1_12:97313883-97318704:+|nuORF	REV__ENST00000555806.5_1_12:97313883-97318704:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.30780029296875	2	501.254163	1000.49377	0.26299	0.00013183	-3.7279	-0.0018686	-3.4649	-0.0017368	501.2521447927578	72.838	0.7206	72.848	72.57	73.29	0.0096512					42	17	4	0	0	0	0.024511	1	8807	8807		19.104	8.8383	1	844890	+		8766	35017	5787	5802	10307	10307					-0.006454926016203899
DSRNRILK	8	Unmodified	_DSRNRILK_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.30780029296875	2	501.296165	1000.57778	0.07406	3.7126E-05	2.8017	0.0014045	2.8758	0.0014416	501.29764927530084	73.017	0.62924	73.027	72.735	73.365	0.0096512					30	15	3	0	0	0	0.027866	1	8807	8807		16.473	0	1	202620	+		8767	24298	5788	5803	10308	10308					0.07751083285950244
DSRQHLGPK	9	Unmodified	_DSRQHLGPK_					0	0	0		ENST00000531958.5_1_11:67183673-67183790:+|nuORF	ENST00000531958.5_1_11:67183673-67183790:+|nuORF	ENST00000531958.5_1_11:67183673-67183790:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.788818359375	2	519.277972	1036.54139	-0.6105	-0.00031702	-1.4416	-0.00074861	-2.0521	-0.0010656	519.2776800592161	53.067	0.72646	53.163	52.83	53.556	0.095669					51	19	4	0	0	0	0.024506	1	5699	5699		30.504	0	1	522500			8768	16276	5789	5804	10309	10309					0.024582063892466977
DSRQLRSL	8	Unmodified	_DSRQLRSL_					0	0	0		FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.26910400390625	2	487.772522	973.530492	-0.52877	-0.00025792	-3.565	-0.0017389	-4.0938	-0.0019969	487.77069892445587	53.767	0.89142	53.62	53.096	53.987	-0.14723					48	24	3	0	0	0	0.027866	1	5798	5798		42.396	10.441	1	2146400			8769	17643	5790	5805	10310	10310					0.042668040149465014
DSRQSPDN	8	Unmodified	_DSRQSPDN_					0	0	0		sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.25592041015625	2	459.69922	917.383887	-0.43816	-0.00020142	3.0059	0.0013818	2.5677	0.0011804	459.70052347886343	29.125	0.75484	29.129	28.755	29.509	0.0031357					29	18	2	0	0	0	0.027866	1	1789	1789		37.159	0	1	129090			8770	37927	5791	5806	10311	10311					-0.07810917940810214
DSRQSPDN	8	Unmodified	_DSRQSPDN_					0	0	0		sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.25616455078125	2	459.69922	917.383887	0.38766	0.00017821	1.405	0.00064586	1.7926	0.00082407	459.6996095937603	28.64	1.1209	28.721	28.37	29.491	0.080811					36	27	2	0	0	0	0.027866	1	1710	1710		38.806	8.3025	1	123300			8771	37927	5791	5806	10312	10312					-0.07810917940810214
DSRSQSPWRL	10	Unmodified	_DSRSQSPWRL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.755615234375	3	411.210788	1230.61053	-0.7998	-0.00032889	1.0841	0.00044581	0.28434	0.00011692	411.211265686272	37.671	0.60242	37.452	37.231	37.834	-0.2195					25	15	2	0	0	0	0.03519	1	3047	3047		26.063	0	1	143230			8772	3328	5792	5807	10313	10313					0.004452456181297748
DSRSSDSSCQV	11	Unmodified	_DSRSSDSSCQV_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.2705688476562	2	585.738216	1169.46188	-0.015847	-9.282E-06	-1.2345	-0.00072308	-1.2503	-0.00073236	585.7374298219114	84.99	0.53611	84.853	84.577	85.113	-0.13753					22	12	2	0	0	0	0.024743	1	10264	10264		43.651	26.286	1	80642			8773	8974	5793	5808	10314	10314					-0.11607273137747143
DSRSSDSSCQV	11	Unmodified	_DSRSSDSSCQV_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.738216	1169.46188	0.12244	7.1716E-05	-1.44	-0.00084349	-1.3176	-0.00077177	585.7374594913748	85.072	0.6192	84.869	84.544	85.163	-0.20329	0.035449	-0.00022928	NaN	43.651	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54456			8774	8974	5793	5808							-0.11607273137747143
DSRSSDSSCQV	11	Unmodified	_DSRSSDSSCQV_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.738216	1169.46188	0.030665	1.7962E-05	-1.1059	-0.00064775	-1.0752	-0.00062979	586.2393071675938	84.937	0.48982	84.778	84.573	85.063	-0.15868	-0.054877	0.0001622	NaN	43.651	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91084			8775	8974	5793	5808							-0.11607273137747143
DSRSVLSDI	9	Unmodified	_DSRSVLSDI_					0	0	0		ENST00000475774.5_1_9:36066843-36085921:+|nuORF	ENST00000475774.5_1_9:36066843-36085921:+|nuORF	ENST00000475774.5_1_9:36066843-36085921:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2973937988281	2	496.256371	990.498189	0.52171	0.0002589	-3.1586	-0.0015675	-2.6369	-0.0013086	496.2544546435679	54.503	0.65584	54.601	54.26	54.916	0.098015					37	18	3	0	0	0	0.023635	1	5854	5854		56.721	0	1	639070			8776	15069	5794	5809	10315	10315					0.0025597182128649365
DSRTIALTI	9	Unmodified	_DSRTIALTI_					0	0	0		ENST00000266671.9_1_12:76426043-76426169:-|nuORF	ENST00000266671.9_1_12:76426043-76426169:-|nuORF	ENST00000266671.9_1_12:76426043-76426169:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2834167480469	2	495.284931	988.55531	-0.22247	-0.00011019	-2.0904	-0.0010353	-2.3129	-0.0011455	495.28371534378294	69.097	0.70424	68.867	68.677	69.382	-0.23048					37	16	3	0	0	0	0.67687	1	8010	8010		47.657	0	1	1966000			8777	11609	5795	5810	10316	10316					0.060574390976512404
DSRTYLLD	8	Unmodified	_DSRTYLLD_					0	0	0		nc|ENSG00000132356|Q13131-2|PRKAA1;ENSG00000132356|ENST00000397128|PRKAA1;ENST00000513152.1_1_5:40764586-40764871:-|nuORF	nc|ENSG00000132356|Q13131-2|PRKAA1	nc|ENSG00000132356|Q13131-2|PRKAA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7922668457031	2	491.745639	981.476725	-0.63312	-0.00031134	1.0844	0.00053327	0.45131	0.00022193	491.74607494585507	60.94	0.52518	61.011	60.751	61.276	0.071125					41	13	4	0	0	0	0.027866	1	6942	6942		40.778	0	1	660000			8778	4595	5796	5811	10317	10317					-0.014754132074131121
DSSCSISILL	10	Unmodified	_DSSCSISILL_					0	0	0			REV__ENST00000417811.2_3_7:32674948-32715621:-|nuORF	REV__ENST00000417811.2_3_7:32674948-32715621:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8207397460938	2	519.262807	1036.51106	-0.61787	-0.00032084	-1.0861	-0.00056396	-1.704	-0.0008848	519.2620223006514	81.904	0.81724	81.762	81.483	82.301	-0.14249					30	18	2	0	0	0	0.03519	1	9832	9832		35.618	0	1	183350	+		8779	32102	5797	5812	10318	10318					-0.005733331108103812
DSSEGLLARA	10	Unmodified	_DSSEGLLARA_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692637-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.285400390625	2	509.76182	1017.50909	-0.33259	-0.00016954	-2.8601	-0.001458	-3.1927	-0.0016275	509.7604261043724	56.97	0.85815	56.806	56.459	57.318	-0.16431					63	23	4	0	0	0	0.03519	1	6395	6395		37.812	8.6415	1	858800			8780	9534	5798	5813	10319	10319					0.0010337419556663008
DSSGTIDMAK	10	Unmodified	_DSSGTIDMAK_					0	0	0			REV__ENSG00000110975|ENST00000228567|SYT10	REV__ENSG00000110975|ENST00000228567|SYT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3032836914062	2	512.734414	1023.45428	-1.1249	-0.00057678	-2.3355	-0.0011975	-3.4605	-0.0017743	512.7330180950646	37.549	0.35445	37.329	37.114	37.468	-0.2195					9	8	2	0	0	0	0.03519	1	2987	2987		54.776	16.965	1	60589	+		8781	21888	5799	5814	10320	10320					-0.05651380667347894
DSSKRLPGGL	10	Unmodified	_DSSKRLPGGL_					0	0	0		nc|ENSG00000181171|Q8NA97|FER1L6-AS1	nc|ENSG00000181171|Q8NA97|FER1L6-AS1	nc|ENSG00000181171|Q8NA97|FER1L6-AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7739868164062	2	515.288005	1028.56146	0.30312	0.00015619	3.1367	0.0016163	3.4398	0.0017725	515.289553188002	69.011	0.45173	68.768	68.548	68.999	-0.24277					16	10	2	0	0	0	0.03519	1	7992	7992		62.107	0	1	214640			8782	18563	5800	5815	10321	10321					0.04831957329201941
DSSQKRLAN	9	Unmodified	_DSSQKRLAN_					0	0	0			REV__nc|ENSG00000171703|Q15560-2|TCEA2	REV__nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.32586669921875	2	509.767437	1017.52032	-0.075728	-3.8604E-05	-1.892	-0.00096448	-1.9677	-0.0010031	510.26746224147024	77.534	0.54277	77.534	77.209	77.752	0					25	12	3	0	0	0	0.0242	1	9604	9604		60.118	22.307	1	269120	+		8783	26591	5801	5816	10322	10322					0.0122619628970142
DSSVHQEKQL	10	Unmodified	_DSSVHQEKQL_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.361328125	2	585.791109	1169.56767	0.64599	0.00037841	-0.33864	-0.00019837	0.30735	0.00018004	585.7904514334298	18.137	0.54325	17.98	17.605	18.148	-0.15637					14	10	2	0	0	0	0.03519	1	240	240		47.657	0	1	23313	+		8784	22460	5802	5817	10323	10323					-0.01033569229934983
DSTFIVNKT	9	Unmodified	_DSTFIVNKT_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.78009033203125	2	512.769114	1023.52368	-0.47015	-0.00024108	-2.2591	-0.0011584	-2.7293	-0.0013995	512.7680235077936	93.031	0.9323	93.027	92.52	93.452	-0.0042038					45	21	3	0	0	0	0.024319	1	11760	11760		18.262	0	1	283600			8785	674	5803	5818	10324	10324					0.01285446343717922
DSTRLGALVWE	11	Unmodified	_DSTRLGALVWE_					0	0	0			REV__ENSG00000260734|ENST00000561754|TLE7	REV__ENSG00000260734|ENST00000561754|TLE7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.7095947265625	3	416.21906	1245.63535	-0.82023	-0.00034139	4.0267	0.001676	3.2064	0.0013346	416.2201478427691	26.257	0.49402	26.021	25.636	26.13	-0.23603					18	13	2	0	0	0	0.024755	1	1349	1349		37.6	16.568	1	174160	+		8786	29108	5804	5819	10325	10325					0.022358807008913573
DSTRLGALVWE	11	Unmodified	_DSTRLGALVWE_					0	0	0			REV__ENSG00000260734|ENST00000561754|TLE7	REV__ENSG00000260734|ENST00000561754|TLE7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	416.21906	1245.63535	0.38344	0.0001596	1.9837	0.00082567	2.3672	0.00098527	416.21940860025535	26.386	0.70361	26.386	26.163	26.867	0	0.16989	-0.00097778	NaN	37.6	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90131	+		8787	29108	5804	5819							0.022358807008913573
DSTRSKGP	8	Unmodified	_DSTRSKGP_					0	0	0			REV__ENSG00000103404|ENST00000219689|USP31	REV__ENSG00000103404|ENST00000219689|USP31	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.21881103515625	2	424.217049	846.419545	0.85808	0.00036401	2.6118	0.001108	3.4698	0.001472	424.21808049737785	98.51	2.2248	98.507	97.634	99.859	-0.0026703					125	51	4	0	0	0	0.96719	1	12478	12478		42.474	0.078325	1	7197400	+		8788	21383	5805	5820	10326	10326					-0.009808356931330309
DSTTSELSSL	10	Unmodified	_DSTTSELSSL_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2899169921875	2	520.243126	1038.4717	1.1918	0.00062002	3.6	0.0018729	4.7918	0.0024929	520.2453301742024	51.517	0.46197	51.333	51.099	51.561	-0.18404					16	11	2	0	0	0	0.03519	1	5268	5268		19.104	0	1	78084	+		8789	24716	5806	5821	10327	10327					-0.04599761860708895
DSVERSII	8	Unmodified	_DSVERSII_					0	0	0			REV__nc|ENSG00000138363|P31939-2|ATIC	REV__nc|ENSG00000138363|P31939-2|ATIC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2292785644531	2	459.748182	917.481811	-0.88453	-0.00040666	1.8324	0.00084243	0.94785	0.00043577	459.748961370399	29.012	0.33686	29.012	28.736	29.073	0					10	7	2	0	0	0	0.027866	1	1722	1722		42.396	9.5837	1	88489	+		8790	23845	5807	5822	10328	10328					0.019768906552030785
DSVGVFLRQL	10	Unmodified	_DSVGVFLRQL_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3193969726562	2	567.319306	1132.62406	-0.80648	-0.00045753	0.31882	0.00018087	-0.48766	-0.00027666	567.3194521584941	57.101	0.69091	57.101	56.841	57.532	0					59	18	5	0	0	0	0.72729	2	6424	6413;6424		65.465	10.743	1	4024700			8791	6507	5808	5823	10329;10330	10330					0.06305103397380662
DSVGVFLRQL	10	Unmodified	_DSVGVFLRQL_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3196411132812	2	567.319306	1132.62406	0.078115	4.4316E-05	-0.69496	-0.00039426	-0.61684	-0.00034995	567.3188657330838	57.304	0.73155	57.139	56.813	57.545	-0.16431					61	19	4	0	0	0	0.72729	1	6411	6411		65.465	12.529	1	3739600			8792	6507	5808	5823	10331	10331					0.06305103397380662
DSVGVFLRQL	10	Unmodified	_DSVGVFLRQL_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.319580078125	2	567.319306	1132.62406	-1	-0.00056733	0.48396	0.00027456	-0.51605	-0.00029277	567.3195250945613	56.938	0.68235	57.033	56.783	57.465	0.095306					59	18	5	0	0	0	0.96822	1	6308	6308		49.536	5.4192	1	3942100			8793	6507	5808	5823	10332	10332					0.06305103397380662
DSVIKVFTF	9	Unmodified	_DSVIKVFTF_					0	0	0		ENST00000583470.1_1_17:30439049-30439436:-|nuORF	ENST00000583470.1_1_17:30439049-30439436:-|nuORF	ENST00000583470.1_1_17:30439049-30439436:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7720336914062	2	528.292225	1054.5699	-0.23949	-0.00012652	3.0793	0.0016268	2.8398	0.0015003	528.2925641628931	55.966	0.63477	55.75	55.562	56.197	-0.21607					29	16	3	0	0	0	0.024344	1	6025	6025		45.972	0	1	212430			8794	17195	5809	5824	10333	10333					0.044795112457904906
DSVKEQNL	8	Unmodified	_DSVKEQNL_					0	0	0			REV__ENST00000532690.1_1_11:19296372-19296621:-|nuORF	REV__ENST00000532690.1_1_11:19296372-19296621:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7377624511719	2	466.737814	931.461075	-0.56035	-0.00026153	0.058982	2.7529E-05	-0.50136	-0.00023401	466.73781347457845	45.095	0.92117	45.095	44.758	45.679	0					74	26	4	0	0	0	0.53523	1	4340	4340		82.305	5.5309	1	9434300	+		8795	34583	5810	5825	10334	10334					-0.0073969972447684995
DSVKEQNL	8	Unmodified	_DSVKEQNL_					0	0	0			REV__ENST00000532690.1_1_11:19296372-19296621:-|nuORF	REV__ENST00000532690.1_1_11:19296372-19296621:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.738037109375	2	466.737814	931.461075	-0.48767	-0.00022762	0.15992	7.4641E-05	-0.32775	-0.00015297	466.73784110464123	45.208	0.9959	45.059	44.763	45.759	-0.1488					63	28	4	0	0	0	0.59392	1	4341	4341		76.847	0.072494	1	9270800	+		8796	34583	5810	5825	10335	10335					-0.0073969972447684995
DSVKTLIYVD	10	Unmodified	_DSVKTLIYVD_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.777587890625	2	576.810979	1151.6074	0.064451	3.7176E-05	0.82745	0.00047728	0.89191	0.00051446	576.8114276039655	46.139	0.69665	46.043	45.741	46.438	-0.096649					28	18	2	0	0	0	0.03519	1	4481	4481		25.574	0	1	543380	+		8797	20301	5811	5826	10336	10336					0.03766557720769015
DSVLAFWSH	9	Unmodified	_DSVLAFWSH_					0	0	0		nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2	nc|ENSG00000168067|Q12851-2|MAP4K2	nc|ENSG00000168067|Q12851-2|MAP4K2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.3007202148438	2	531.256174	1060.49779	-0.55624	-0.00029551	-0.2287	-0.0001215	-0.78494	-0.00041701	531.2557451573728	31.11	3.7427	31.179	29.48	33.222	0.06896					202	93	4	0	0	0	0.02435	1	1842	1842		51.335	5.3835	1	965800			8798	7781	5812	5827	10337	10337					-0.030034031079139822
DSVLFLKKID	10	Unmodified	_DSVLFLKKID_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.343505859375	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0122	1	12077	12077		44.377	6.5657	1	12648000			8799	6658	5813	5828	10338	10338					0.09415427371436635
DSVLFLKKID	10	Unmodified	_DSVLFLKKID_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.34375	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0545	1	12019	12019		38.754	2.436	1	13724000			8800	6658	5813	5828	10339	10339					0.09415427371436635
DSVLFLKKID	10	Unmodified	_DSVLFLKKID_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.118	1	11282	11282		30.318	5.7985	1	15816000			8801	6658	5813	5828	10340	10340					0.09415427371436635
DSVLFLKKID	10	Unmodified	_DSVLFLKKID_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428955078125	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0816	1	11545	11545		35.152	5.982	1	17343000			8802	6658	5813	5828	10341	10341					0.09415427371436635
DSVLLLMIL	9	Unmodified	_DSVLLLMIL_					0	0	0			REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF	REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8133239746094	2	508.806654	1015.59875	-0.027588	-1.4037E-05	-4.4151	-0.0022464	-4.4426	-0.0022604	508.8046356154899	93.442	0.70012	93.32	92.84	93.54	-0.12215					32	15	3	0	0	0	0.024535	1	11464	11464		12.207	0	1	162940	+		8803	31133	5814	5829	10342	10342					0.09157912550585934
DSVPRENHES	10	Unmodified	_DSVPRENHES_					0	0	0		nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1	nc|ENSG00000120616|Q9H2F5-3|EPC1	nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2626342773438	2	585.262716	1168.51088	-0.97172	-0.00056871	0.46218	0.00027049	-0.50954	-0.00029822	585.2629390186464	26.291	1.4985	26.055	25.843	27.341	-0.23603					113	38	4	0	0	0	1.0002	1	1387	1387		45.972	1.5951	1	5115100			8804	3825	5815	5830	10343	10343					-0.06663616786477178
DSVQHQELL	9	Unmodified	_DSVQHQELL_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.296875	2	534.769645	1067.52474	-0.15518	-8.2987E-05	3.6449	0.0019492	3.4897	0.0018662	534.7715814995673	80.007	0.42063	79.788	79.577	79.997	-0.21922					25	9	4	0	0	0	0.024427	1	9568	9568		26.693	0	1	163790	+		8805	19695	5816	5831	10344	10344					-0.006323392873810008
DSVRKGLLIF	10	Unmodified	_DSVRKGLLIF_					0	0	0		SLFN12|p.S421L|1|0.33|ENSG00000172123|chr17:35411813-35411813|G/A|missense_variant	SLFN12|p.S421L|1|0.33|ENSG00000172123|chr17:35411813-35411813|G/A|missense_variant	SLFN12|p.S421L|1|0.33|ENSG00000172123|chr17:35411813-35411813|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.7628784179688	2	574.345323	1146.67609	-0.087933	-5.0504E-05	-0.48825	-0.00028042	-0.57618	-0.00033093	574.3449992946265	72.729	0.46822	72.464	72.17	72.638	-0.26479					15	10	2	0	0	0	0.03519	1	8546	8546		30.318	0	1	72830			8806	37898	5817	5832	10345	10345					0.10862266811136578
DSVRQRLL	8	Unmodified	_DSVRQRLL_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MSMS	OPSCC_39_ClassI_Rep-2	2	493.7954406738281	2	493.790715	985.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.42	1	106.42	105.92	106.92	-0.0013123								0	0	0	0.70856	1	13624	13624		40.778	0	1				8807	10874	5818	5833	10346	10346					0.07351680911676794
DSVRVAAAQV	10	Unmodified	_DSVRVAAAQV_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.271240234375	2	508.28018	1014.54581	0.037038	1.8826E-05	4.4845	0.0022794	4.5216	0.0022982	508.28191740810314	50.629	0.3314	50.35	50.145	50.477	-0.27977					11	8	2	0	0	0	0.03519	1	5149	5149		29.551	20.368	1	238990	+		8808	27509	5819	5834	10347	10347					0.03911670812135526
DSVSSVKFNPI	11	Unmodified	_DSVSSVKFNPI_					0	0	0		ENST00000561147.1_1_15:51237268-51237508:+|nuORF	ENST00000561147.1_1_15:51237268-51237508:+|nuORF	ENST00000561147.1_1_15:51237268-51237508:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.2936401367188	2	596.814053	1191.61355	-0.39649	-0.00023663	0.18593	0.00011097	-0.21056	-0.00012566	596.8138905590947	52.969	0.6326	52.842	52.472	53.104	-0.12705					21	15	2	0	0	0	0.024727	1	5557	5557		20.837	0	1	109330			8809	16817	5820	5835	10348	10348					0.02541075952308347
DSWVIGFTI	9	Unmodified	_DSWVIGFTI_					0	0	0		OR2J2|p.A148D|1|0.48|ENSG00000204700|chr6:29174078-29174078|C/A|missense_variant	OR2J2|p.A148D|1|0.48|ENSG00000204700|chr6:29174078-29174078|C/A|missense_variant	OR2J2|p.A148D|1|0.48|ENSG00000204700|chr6:29174078-29174078|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2329711914062	2	519.26875	1036.52295	0.096905	5.032E-05	-3.9048	-0.0020276	-3.8079	-0.0019773	519.2663524241748	45.378	0.34835	45.126	44.944	45.292	-0.25252					21	9	3	0	0	0	0.024487	1	4313	4313		24.203	0	1	325130			8810	18909	5821	5836	10349	10349					0.006146516946728298
DTAKQSGHS	9	Unmodified	_DTAKQSGHS_					0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.75384521484375	2	465.717413	929.420273	-0.6156	-0.0002867	-3.2163	-0.0014979	-3.8319	-0.0017846	465.7157996744624	23.462	0.25174	23.462	23.399	23.651	0					7	5	2	0	0	0	0.024374	1	953	953		49.442	12.282	1	23102	+		8811	19097	5822	5837	10350	10350					-0.047260410440799205
DTALRLSVVS	10	Unmodified	_DTALRLSVVS_					0	0	0			REV__ENST00000391834.6_1_19:50372921-50373047:-|nuORF	REV__ENST00000391834.6_1_19:50372921-50373047:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8175659179688	2	530.803488	1059.59242	0.38777	0.00020583	-3.0795	-0.0016346	-2.6918	-0.0014288	531.302050346255	68.573	0.48101	68.343	67.917	68.398	-0.23048					16	11	2	0	0	0	0.03519	1	7894	7894		25.574	4.6271	1	976450	+		8812	31583	5823	5838	10351	10351					0.0650111064342127
DTARKKNLV	9	Unmodified	_DTARKKNLV_					0	0	0		ENST00000470761.5_1_7:10979390-10979450:-|nuORF	ENST00000470761.5_1_7:10979390-10979450:-|nuORF	ENST00000470761.5_1_7:10979390-10979450:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2971801757812	2	522.811648	1043.60874	-1.0666	-0.00055765	2.0321	0.0010624	0.96551	0.00050478	522.8134795027637	51.445	0.41264	51.532	51.302	51.715	0.087009					17	11	2	0	0	0	0.024427	1	5411	5411		34.173	5.023	1	156220			8813	14938	5824	5839	10352	10352					0.08868236600164892
DTARVTLVE	9	Unmodified	_DTARVTLVE_					0	0	0			REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2747497558594	2	502.274564	1002.53457	-0.34479	-0.00017318	-0.40971	-0.00020579	-0.75449	-0.00037896	502.2743666614946	48.637	1.8074	48.637	48.277	50.084	0					145	50	5	0	0	0	0.22379	2	5014	4987;5014		85.862	10.819	1	33137000	+		8814	19288	5825	5840	10353;10354	10354					0.03340848718016787
DTARVTLVE	9	Unmodified	_DTARVTLVE_					0	0	0			REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2746276855469	2	502.274564	1002.53457	-0.39647	-0.00019914	-0.3691	-0.00018539	-0.76558	-0.00038453	502.2744118269498	48.48	1.9747	48.547	48.191	50.165	0.066795					146	54	5	0	0	0	0.22902	1	4894	4894		85.161	2.4103	1	23991000	+		8815	19288	5825	5840	10355	10355					0.03340848718016787
DTATIPFLNL	10	Unmodified	_DTATIPFLNL_					0	0	0		SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|44|1|anti-sense	SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|44|1|anti-sense	SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|44|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7847900390625	2	552.800414	1103.58628	-0.14201	-7.8504E-05	0.19978	0.00011044	0.057772	3.1937E-05	552.8004122012396	76.061	0.18742	75.803	75.672	75.86	-0.25866					7	4	2	0	0	0	0.03519	1	9019	9019		19.104	0	1	45748			8816	37998	5826	5841	10356	10356					0.03862592411906007
DTAVLHLDTN	10	Unmodified	_DTAVLHLDTN_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.7749633789062	2	549.774928	1097.5353	-0.63171	-0.0003473	0.052602	2.8919E-05	-0.5791	-0.00031838	549.7747889304002	43.861	0.97858	43.891	43.593	44.572	0.030827					74	27	4	0	0	0	0.86389	1	4098	4098		56.434	0	1	2933300			8817	8381	5827	5842	10357	10357					-0.009563566329461537
DTAVRHVL	8	Unmodified	_DTAVRHVL_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.75830078125	2	455.758884	909.503215	-0.027735	-1.2641E-05	-0.042085	-1.9181E-05	-0.06982	-3.1821E-05	455.75873478096395	33.447	1.2384	33.216	32.752	33.99	-0.23107					73	30	4	0	0	0	0.2917	3	2398	2377;2386;2398		115.46	26.816	1	2405900			8818	6078	5828	5843	10358;10359;10360	10360					0.044843204745689036
DTAVRHVL	8	Unmodified	_DTAVRHVL_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.75860595703125	2	455.758884	909.503215	-0.3368	-0.0001535	0.2082	9.489E-05	-0.1286	-5.861E-05	455.7588261327387	33.426	0.9401	33.226	32.855	33.795	-0.20019					62	23	4	0	0	0	0.42327	3	2381	2370;2381;2393		94.006	21.333	1	2534800			8819	6078	5828	5843	10361;10362;10363	10362					0.044843204745689036
DTAVRHVL	8	Unmodified	_DTAVRHVL_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.7586364746094	2	455.758884	909.503215	-0.89436	-0.00040761	0.76454	0.00034845	-0.12982	-5.9168E-05	455.7591493920737	33.381	0.91185	33.215	32.8	33.711	-0.16565					54	22	3	0	0	0	0.33369	3	2374	2353;2362;2374		106.42	17.772	1	2498800			8820	6078	5828	5843	10364;10365;10366	10366					0.044843204745689036
DTCACEKEPI	10	Unmodified	_DTCACEKEPI_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.3014526367188	2	554.736099	1107.45765	0.89001	0.00049372	-3.6003	-0.0019972	-2.7103	-0.0015035	554.7341685090402	77.597	0.55019	77.355	77.148	77.698	-0.24232					17	12	3	0	0	0	0.03519	1	9221	9221		52.937	10.541	1	126710	+		8821	25943	5829	5844	10367	10367					-0.0917845388501064
DTCGDLLVTL	10	Unmodified	_DTCGDLLVTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.276611328125	2	525.262807	1048.51106	0.18827	9.8889E-05	-1.54	-0.0008089	-1.3517	-0.00071001	525.2615753487163	56.427	0.42977	56.211	56.038	56.468	-0.21607					18	10	2	0	0	0	0.03519	1	6132	6132		25.574	3.6142	1	135660			8822	2483	5830	5845	10368	10368					-0.011253331108036946
DTCVTTRNST	10	Unmodified	_DTCVTTRNST_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2767944335938	2	549.24822	1096.48189	-0.91899	-0.00050475	1.8139	0.0009963	0.89494	0.00049154	549.2491402270356	61.512	0.68806	61.335	61.078	61.766	-0.17781					21	16	2	0	0	0	0.03519	1	6953	6953		45.022	10.85	1	228800			8823	8429	5831	5846	10369	10369					-0.062494774071410575
DTCVTTRNST	10	Unmodified	_DTCVTTRNST_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2763061523438	2	549.24822	1096.48189	-0.37346	-0.00020512	0.29255	0.00016068	-0.080918	-4.4444E-05	549.2483848923744	62.163	0.35257	61.906	61.744	62.097	-0.25725					15	8	2	0	0	0	0.03519	1	6966	6966		51.528	18.715	1	109870			8824	8429	5831	5846	10370	10370					-0.062494774071410575
DTCVTTRNST	10	Unmodified	_DTCVTTRNST_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.24822	1096.48189	-0.21198	-0.00011643	0.63278	0.00034755	0.4208	0.00023112	549.2485481603056	61.618	0.4181	61.405	61.083	61.501	-0.21375	0.027941	-0.00049769	NaN	45.022	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153630			8825	8429	5831	5846							-0.062494774071410575
DTCVTTRNST	10	Unmodified	_DTCVTTRNST_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.24822	1096.48189	-0.47372	-0.00026019	0.95032	0.00052196	0.47659	0.00026177	549.2485966950793	61.648	0.49175	61.391	61.175	61.667	-0.25725	0.01409	-0.00014888	NaN	45.022	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224950			8826	8429	5831	5846							-0.062494774071410575
DTDAAFELNSQ	11	Unmodified	_DTDAAFELNSQ_					0	0	0		ENSG00000205268|ENST00000401827|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5719909667969	3	404.17893	1209.51496	-0.87395	-0.00035323	-0.60092	-0.00024288	-1.4749	-0.00059611	404.5128709029345	43.202	0.7161	42.976	42.559	43.275	-0.22597					40	18	3	0	0	0	0.024751	1	3868	3868		34.087	16.253	1	154300			8827	10411	5832	5847	10371	10371					-0.08141572083422943
DTDEYVLKY	9	Unmodified	_DTDEYVLKY_					0	0	0		ENSG00000096093|ENST00000371068|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.3056030273438	2	573.271687	1144.52882	-0.27013	-0.00015486	0.84121	0.00048224	0.57108	0.00032738	573.2720097608822	58.9	0.62909	58.712	58.349	58.979	-0.18795					47	15	4	0	0	0	0.024261	1	6488	6488		54.776	25.627	1	1991600			8828	2048	5833	5848	10372	10372					-0.03766294584329444
DTDEYVLKY	9	Unmodified	_DTDEYVLKY_					0	0	0		ENSG00000096093|ENST00000371068|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.3065185546875	2	573.271687	1144.52882	0.15196	8.7113E-05	0.3498	0.00020053	0.50175	0.00028764	573.2717931741855	58.837	0.56415	58.655	58.308	58.872	-0.18134					41	13	4	0	0	0	0.024344	1	6472	6472		54.776	15.523	1	1833200			8829	2048	5833	5848	10373	10373					-0.03766294584329444
DTDEYVLKY	9	Unmodified	_DTDEYVLKY_					0	0	0		ENSG00000096093|ENST00000371068|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.3050537109375	2	573.271687	1144.52882	0.5158	0.00029569	-0.0094938	-5.4425E-06	0.5063	0.00029025	573.2715307136395	58.971	0.47495	58.729	58.461	58.936	-0.24166					41	11	4	0	0	0	0.024263	1	6482	6482		60.972	11.53	1	2006200			8830	2048	5833	5848	10374	10374					-0.03766294584329444
DTDGILIIW	9	Unmodified	_DTDGILIIW_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.334228515625	2	523.281857	1044.54916	-0.24303	-0.00012718	-2.5596	-0.0013394	-2.8027	-0.0014666	523.2803623224896	27.212	0.42173	27.055	26.844	27.266	-0.15664					16	9	2	0	0	0	0.024443	1	1453	1453		26.796	0	1	171470			8831	38151;4848	5834	5849	10375	10375					0.028669208661540324
DTDHSPLPK	9	Unmodified	_DTDHSPLPK_					0	0	0			REV__GYPA|p.P131H|1|0.31|ENSG00000170180|chr4:144114733-144114733|G/T|missense_variant	REV__GYPA|p.P131H|1|0.31|ENSG00000170180|chr4:144114733-144114733|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7808532714844	2	505.251089	1008.48762	0.7043	0.00035585	-1.6483	-0.00083278	-0.94395	-0.00047693	505.2502016434443	83.184	0.38504	83.093	82.872	83.257	-0.090454					13	8	2	0	0	0	0.024294	1	10372	10372		29.15	0	1	82593	+		8832	36088	5835	5850	10376	10376					-0.016280108331329757
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.52471923828125	3	410.524372	1228.55129	-0.49981	-0.00020518	0.48769	0.00020021	-0.012121	-4.9759E-06	410.5246233665826	55.183	1.6974	55.037	54.647	56.344	-0.14609					150	45	6	0	0	0	0.28753	6	5890	5878;5890;5902;5915;5927;5941		77.318	26.763	1	26797000			8833	18235	5836	5851	10377;10378;10379;10380;10381;10382	10378					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	615.282958984375	2	615.28292	1228.55129	-1.495	-0.00091987	1.3653	0.00084004	-0.12975	-7.9832E-05	615.2837961324145	55.163	1.2188	55.017	54.686	55.905	-0.14609					101	33	5	0	0	0	0.020687	5	5916	5881;5891;5903;5916;5930		120.62	29.398	1	13270000			8834	18235	5836	5851	10383;10384;10385;10386;10387	10386					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.5246276855469	3	410.524372	1228.55129	0.090487	3.7147E-05	-0.30475	-0.00012511	-0.21426	-8.7959E-05	410.5242843445986	55.244	1.2696	55.013	54.674	55.943	-0.23087					128	35	6	0	0	0	0.15366	6	5907	5886;5895;5907;5920;5933;5945		98.629	48.596	1	30917000			8835	18235	5836	5851	10388;10389;10390;10391;10392;10393	10390					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	615.2823486328125	2	615.28292	1228.55129	-0.65785	-0.00040476	0.44712	0.00027511	-0.21073	-0.00012966	615.2831688536211	55.227	1.2673	54.996	54.638	55.905	-0.23087					100	35	5	0	0	0	0.048057	4	5934	5897;5908;5922;5934		101.6	46.878	1	13915000			8836	18235	5836	5851	10394;10395;10396;10397	10397					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.52459716796875	3	410.524372	1228.55129	0.071899	2.9516E-05	-0.10171	-4.1756E-05	-0.029815	-1.224E-05	410.52436538087017	55.201	1.7981	54.995	54.685	56.483	-0.20613					152	48	6	0	0	0	0.15366	6	5895	5874;5883;5895;5908;5920;5935		98.629	47.838	1	27793000			8837	18235	5836	5851	10398;10399;10400;10401;10402;10403	10400					-0.053846503960585324
DTDHYFLRY	9	Unmodified	_DTDHYFLRY_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	615.282958984375	2	615.28292	1228.55129	-0.14297	-8.7966E-05	0.0029178	1.7953E-06	-0.14005	-8.6171E-05	615.2829199616694	55.201	1.2853	54.995	54.685	55.97	-0.20613					97	35	4	0	0	0	0.030064	5	5878	5878;5889;5903;5916;5929		113.41	47.946	1	12894000			8838	18235	5836	5851	10404;10405;10406;10407;10408	10404					-0.053846503960585324
DTDIQAPNHVY	11	Unmodified	_DTDIQAPNHVY_					0	0	0			REV__ENSG00000186340|ENST00000617924|THBS2	REV__ENSG00000186340|ENST00000617924|THBS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	636.796142578125	2	636.796392	1271.57823	-0.54768	-0.00034876	0.040933	2.6066E-05	-0.50674	-0.00032269	636.7962306903851	83.854	0.85134	83.643	83.308	84.159	-0.21159					44	19	3	0	0	0	0.99553	1	10133	10133		37.812	0	1	943120	+		8839	27849	5837	5852	10409	10409					-0.046695865755282284
DTDKQDVNY	9	Unmodified	_DTDKQDVNY_					0	0	0			REV__CON__Q28194	REV__CON__Q28194	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.2418212890625	2	549.240918	1096.46728	-0.057904	-3.1803E-05	0.2173	0.00011935	0.1594	8.7549E-05	549.240926217939	49.867	0.82928	49.587	49.24	50.07	-0.27977					62	21	4	0	0	0	0.28753	1	5005	5005		77.318	4.4383	1	4432600	+	+	8840	19572	5838	5853	10410	10410					-0.07709226283623138
DTDLAVLPK	9	Unmodified	_DTDLAVLPK_					0	0	0			REV__nc|ENSG00000164970|Q8IW50-3|FAM219A	REV__nc|ENSG00000164970|Q8IW50-3|FAM219A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2548522949219	2	486.274032	970.533512	-1.2388	-0.00060239	0.30364	0.00014765	-0.93514	-0.00045473	486.27444323179793	64.884	0.51711	64.884	64.538	65.055	0					15	13	2	0	0	0	0.024261	1	7622	7622		45.972	0	1	186580	+		8841	25827	5839	5854	10411	10411					0.04706634349099659
DTDLQPKSI	9	Unmodified	_DTDLQPKSI_					0	0	0			REV__nc|ENSG00000187642|Q5SV97-3|PERM1	REV__nc|ENSG00000187642|Q5SV97-3|PERM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	508.766571	1015.51859	-0.58322	-0.00029672	0.56099	0.00028541	-0.02223	-1.131E-05	508.7670030526547	22.684	1.752	22.684	21.771	23.523	0					104	38	4	0	0	0	0.072054	1	803	803		120.62	10.501	1	5505800	+		8842	27954	5840	5855	10412	10412					0.011451424810957178
DTDRLMVIL	9	Unmodified	_DTDRLMVIL_					0	0	0			REV__ENSG00000166351|ENST00000299443|POTED;REV__ENSG00000196604|ENST00000409914|POTEF	REV__ENSG00000196604|ENST00000409914|POTEF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7494506835938	2	538.294442	1074.57433	-0.43478	-0.00023404	-1.885	-0.0010147	-2.3197	-0.0012487	538.2931832941644	76.055	0.3434	75.797	75.672	76.016	-0.25866					14	8	2	0	0	0	0.024466	1	9054	9054		12.207	0	1	244780	+		8843	26006;28021	5841	5856	10413	10413					0.040026523970709604
DTDSQRLAY	9	Unmodified	_DTDSQRLAY_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7509765625	2	534.751453	1067.48835	-0.58818	-0.00031453	0.9161	0.00048989	0.32792	0.00017536	534.7516679761683	39.951	0.74569	39.801	39.513	40.258	-0.1497					45	19	3	0	0	0	0.16638	2	3425	3416;3425		95.815	34.843	1	3690800			8844	2322	5842	5857	10414;10415	10415					-0.042692161840932386
DTDSQRLAY	9	Unmodified	_DTDSQRLAY_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.7508544921875	2	534.751453	1067.48835	-0.59439	-0.00031785	0.65799	0.00035186	0.063601	3.4011E-05	534.7515145744716	40.095	0.72103	39.87	39.501	40.222	-0.225					43	18	3	0	0	0	0.17822	3	3430	3420;3430;3443		93.195	36.504	1	3610800			8845	2322	5842	5857	10416;10417;10418	10417					-0.042692161840932386
DTDSQRLAY	9	Unmodified	_DTDSQRLAY_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.7507934570312	2	534.751453	1067.48835	-0.94825	-0.00050708	1.2147	0.00064956	0.26645	0.00014248	534.7518640903688	40.057	0.69001	39.826	39.507	40.197	-0.23021					43	17	3	0	0	0	0.16638	3	3431	3409;3420;3431		95.815	37.033	1	3347200			8846	2322	5842	5857	10419;10420;10421	10421					-0.042692161840932386
DTDTNAQITY	10	Unmodified	_DTDTNAQITY_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.2536010742188	2	571.254025	1140.4935	-0.42653	-0.00024366	-0.032474	-1.8551E-05	-0.45901	-0.00026221	571.2539834972857	52.456	1.3625	52.338	51.974	53.337	-0.11876					82	34	3	0	0	0	4.429E-06	4	5452	5428;5440;5452;5464		276.75	147.33	1	23016000			8847	1818;17643	5843	5858	10422;10423;10424;10425	10424					-0.07112957112144613
DTDTNAQITY	10	Unmodified	_DTDTNAQITY_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.2540893554688	2	571.254025	1140.4935	0.022225	1.2696E-05	-0.58292	-0.00033299	-0.56069	-0.0003203	571.2537028058239	52.72	1.3076	52.462	52.1	53.408	-0.25838					61	33	2	0	0	0	1.2586E-06	4	5481	5457;5469;5481;5493		305.12	172.36	1	23301000			8848	1818;17643	5843	5858	10426;10427;10428;10429	10428					-0.07112957112144613
DTDTNAQITY	10	Unmodified	_DTDTNAQITY_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.2538452148438	2	571.254025	1140.4935	-0.083429	-4.7659E-05	-0.025772	-1.4723E-05	-0.1092	-6.2382E-05	571.2539656878803	52.578	1.2163	52.388	52.067	53.283	-0.18982					75	30	3	0	0	0	4.8167E-06	3	5463	5439;5451;5463		272.66	146.36	1	16864000			8849	1818;17643	5843	5858	10430;10431;10432	10432					-0.07112957112144613
DTEARPVAQ	9	Unmodified	_DTEARPVAQ_					0	0	0			REV__ENST00000429770.5_2_3:50402382-50403264:-|nuORF	REV__ENST00000429770.5_2_3:50402382-50403264:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7405090332031	2	493.748713	985.482873	-0.1005	-4.9623E-05	4.0178	0.0019838	3.9173	0.0019342	493.7505724285787	53.746	0.66306	53.501	53.199	53.862	-0.2453					50	19	4	0	0	0	0.0242	1	5614	5614		51.193	5.2204	1	3408300	+		8850	32344	5844	5859	10433	10433					-0.010448949759052084
DTECDSTTSS	10	Unmodified	_DTECDSTTSS_					0	0	0			REV__nc|ENSG00000126562|Q96J92-2|WNK4	REV__nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8010864257812	2	523.184951	1044.35535	1.9829	0.0010374	2.0876	0.0010922	4.0705	0.0021296	523.1847466219765	19.841	0.2339	19.907	19.735	19.969	0.066195					9	4	3	0	0	0	0.03519	1	412	412		25.574	4.6271	1	12568	+		8851	22903	5845	5860	10434	10434					-0.16505448422913105
DTEDAGLDDW	10	Unmodified	_DTEDAGLDDW_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.777099609375	2	568.722558	1135.43056	-0.34205	-0.00019453	4.043	0.0022993	3.7009	0.0021048	568.7246278715634	62.414	0.43042	62.156	61.897	62.327	-0.25824					21	10	3	0	0	0	0.03519	1	6985	6985		26.693	2.1737	1	409990			8852	6667	5846	5861	10435	10435					-0.13173522900183343
DTEKELQALY	10	Unmodified	_DTEKELQALY_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.3051147460938	2	605.303518	1208.59248	-0.68613	-0.00041532	0.80702	0.00048849	0.12089	7.3175E-05	605.3039531682399	61.53	0.62298	61.317	61.001	61.624	-0.21375					41	14	4	0	0	0	0.50091	1	6890	6890		88.177	29.947	1	2392700			8853	1544	5847	5862	10436	10436					-0.0034693414722823945
DTEKELQALY	10	Unmodified	_DTEKELQALY_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.304443359375	2	605.303518	1208.59248	-1.2271	-0.00074274	1.254	0.00075905	0.026945	1.631E-05	605.3043100102433	61.379	0.74305	61.203	60.874	61.617	-0.1761					39	17	3	0	0	0	0.54106	1	6872	6872		83.647	28.143	1	1762300			8854	1544	5847	5862	10437	10437					-0.0034693414722823945
DTEKELQALY	10	Unmodified	_DTEKELQALY_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.306396484375	2	605.303518	1208.59248	-0.54551	-0.0003302	0.70458	0.00042649	0.15907	9.6287E-05	605.30384756029	61.6	0.65867	61.343	61.008	61.667	-0.25725					41	15	4	0	0	0	0.47897	1	6879	6879		90.601	21.755	1	1889600			8855	1544	5847	5862	10438	10438					-0.0034693414722823945
DTENQSLKR	9	Unmodified	_DTENQSLKR_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.778002	1089.54145	-1.3056	-0.00071259	-2.2254	-0.0012146	-3.531	-0.0019272	546.2790006308384	90.589	0.29691	90.434	90.305	90.602	-0.1552					9	6	2	0	0	0	0.024397	1	11103	11103		24.519	0	1	33556	+		8856	26330	5848	5863	10439	10439					0.00026161598589169444
DTENQTLNY	9	Unmodified	_DTENQTLNY_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.24169921875	2	549.240918	1096.46728	-0.073201	-4.0205E-05	0.34287	0.00018832	0.26967	0.00014812	549.2410024689855	49.61	0.94625	49.505	49.103	50.049	-0.10558					64	24	4	0	0	0	0.013337	3	4991	4979;4991;5005		176.44	72.388	1	5024100			8857	3824	5849	5864	10440;10441;10442	10441					-0.07709226283623138
DTENQTLNY	9	Unmodified	_DTENQTLNY_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.2412719726562	2	549.240918	1096.46728	-0.057904	-3.1803E-05	0.2173	0.00011935	0.1594	8.7549E-05	549.240926217939	49.867	0.82928	49.587	49.24	50.07	-0.27977					62	21	4	0	0	0	0.012922	3	5015	5015;5026;5041		172.25	68.192	1	4432600			8858	3824	5849	5864	10443;10444;10445	10443					-0.07709226283623138
DTENQTLNY	9	Unmodified	_DTENQTLNY_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.2413330078125	2	549.240918	1096.46728	0.12172	6.6852E-05	0.055929	3.0719E-05	0.17765	9.757E-05	549.2408722787499	49.658	0.7849	49.478	49.154	49.939	-0.18071					57	20	4	0	0	0	0.013719	3	4999	4986;4999;5010		168.26	64.202	1	5096000			8859	3824	5849	5864	10446;10447;10448	10447					-0.07709226283623138
DTENVPVTL	9	Unmodified	_DTENVPVTL_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2803039550781	2	494.253297	986.492041	1.9758	0.00097656	-0.93848	-0.00046385	1.0373	0.00051271	494.25267496671086	24.75	0.43743	24.569	24.374	24.811	-0.18089					16	9	2	0	0	0	0.024021	1	1110	1110		79.451	13.022	1	82374			8860	4092	5850	5865	10449	10449					-0.0017454641023277873
DTERGLETL	9	Unmodified	_DTERGLETL_					0	0	0			REV__nc|ENSG00000136108|Q8WWK9-6|CKAP2	REV__nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2716064453125	2	517.261653	1032.50875	0.078099	4.0397E-05	-3.0821	-0.0015942	-3.004	-0.0015539	517.260332837166	49.421	0.72198	49.141	48.825	49.547	-0.27977					46	18	4	0	0	0	0.024374	1	4927	4927		49.442	5.3247	1	737020	+		8861	23626	5851	5866	10450	10450					-0.00620045524260604
DTERQGPRAD	10	Unmodified	_DTERQGPRAD_					0	0	0		ENST00000420110.1_1_6:30227739-30228176:+|nuORF	ENST00000420110.1_1_6:30227739-30228176:+|nuORF	ENST00000420110.1_1_6:30227739-30228176:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2874755859375	2	572.770708	1143.52686	0.26623	0.00015249	0.090354	5.1752E-05	0.35658	0.00020424	572.7707985427922	71.408	0.38711	71.133	70.967	71.354	-0.27509					11	8	2	0	0	0	0.03519	1	8313	8313		35.152	3.6222	1	102800			8862	13967	5852	5867	10451	10451					-0.039159105495627955
DTFELRYALL	10	Unmodified	_DTFELRYALL_					0	0	0			REV__ENSG00000105520|ENST00000688289|PLPPR2	REV__ENSG00000105520|ENST00000688289|PLPPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.8841247558594	3	414.223923	1239.64994	-0.83223	-0.00034473	-0.077129	-3.1949E-05	-0.90936	-0.00037668	414.2230351899014	28.077	0.24058	27.908	27.807	28.048	-0.16897					8	5	2	0	0	0	0.03519	1	1590	1590		33.922	2.2874	1	192990	+		8863	21534	5853	5868	10452	10452					0.039699528490018565
DTFKKKAEA	9	Unmodified	_DTFKKKAEA_					0	0	0			REV__ENSG00000174450|ENST00000567107|GOLGA6L2	REV__ENSG00000174450|ENST00000567107|GOLGA6L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2557983398438	2	519.284931	1036.55531	-0.023003	-1.1945E-05	0.16696	8.6698E-05	0.14395	7.4753E-05	519.2848494285744	50.656	0.74301	50.544	50.043	50.786	-0.11163					39	19	3	0	0	0	0.024427	1	5105	5105		34.173	0	1	1236300	+		8864	26864	5854	5869	10453	10453					0.03849439097666618
DTFLISRRTK	10	Unmodified	_DTFLISRRTK_					0	0	0		ENST00000382044.8_1_15:43784217-43784558:-|nuORF	ENST00000382044.8_1_15:43784217-43784558:-|nuORF	ENST00000382044.8_1_15:43784217-43784558:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.21881103515625	3	412.906816	1235.69862	-0.56582	-0.00023363	4.3833	0.0018099	3.8175	0.0015763	412.90843097325927	40.374	0.57697	40.224	39.933	40.51	-0.1497					29	15	3	0	0	0	0.03519	1	3535	3535		8.7993	0	1	764030			8865	13354	5855	5870	10454	10454					0.09019866208745952
DTGGGEGDAL	10	Unmodified	_DTGGGEGDAL_					0	0	0			REV__nc|ENSG00000100842|O43281-2|EFS	REV__nc|ENSG00000100842|O43281-2|EFS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.23223876953125	2	446.188154	890.361755	-0.98773	-0.00044071	3.7748	0.0016843	2.7871	0.0012436	446.1897988509615	37.855	0.21207	37.773	37.671	37.883	-0.082516					7	5	2	0	0	0	0.03519	1	3097	3097		26.693	9.3279	1	60184	+		8866	19732	5856	5871	10455	10455					-0.0878114240922514
DTGTIYKK	8	Unmodified	_DTGTIYKK_					0	0	0			REV__nc|ENSG00000117500|Q9Y3A6-2|TMED5	REV__nc|ENSG00000117500|Q9Y3A6-2|TMED5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2696533203125	2	463.2531	924.491647	0.61385	0.00028437	-2.9976	-0.0013887	-2.3838	-0.0011043	463.2515452080889	21.206	0.49094	21.278	21.008	21.499	0.071487					16	9	2	0	0	0	0.027866	1	584	584		37.159	0	1	192200	+		8867	36598	5857	5872	10456	10456					0.026380786605727735
DTHVRKHKI	9	Unmodified	_DTHVRKHKI_					0	0	0			REV__ENSG00000125945|ENST00000314011|ZNF436	REV__ENSG00000125945|ENST00000314011|ZNF436	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3292846679688	2	567.330539	1132.64652	0.14889	8.447E-05	-1.4619	-0.0008294	-1.313	-0.00074493	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	0.94809	1	10886	10886		29.15	1.2673	1	5699400	+		8868	22863	5858	5873	10457	10457					0.0855074758567298
DTIDEPDS	8	Unmodified	_DTIDEPDS_					0	0	0			REV__nc|ENSG00000065243|Q16513-3|PKN2	REV__nc|ENSG00000065243|Q16513-3|PKN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.23223876953125	2	446.182537	890.350522	-1.0037	-0.00044784	-0.91526	-0.00040837	-1.919	-0.00085621	446.1820797956732	37.843	0.17651	37.761	37.636	37.813	-0.082516					8	4	2	0	0	0	0.027866	1	3097	3097		18.324	0	1	92104	+		8869	20303	5859	5874	10458	10458					-0.0990396450335993
DTIHVHKR	8	Unmodified	_DTIHVHKR_					0	0	0		ENSG00000162438|ENST00000375949|CTRC	ENSG00000162438|ENST00000375949|CTRC	ENSG00000162438|ENST00000375949|CTRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2742614746094	2	503.283057	1004.55156	-1.0314	-0.00051911	2.1133	0.0010636	1.0818	0.00054446	503.28449601512136	91.558	0.55461	91.558	91.174	91.729	0					26	12	3	0	0	0	0.027866	1	11561	11561		33.516	0	1	481230			8870	6945	5860	5875	10459	10459					0.049468141144643596
DTIILFPW	8	Unmodified	_DTIILFPW_					0	0	0			REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2786560058594	2	502.776211	1003.53787	0.15327	7.7063E-05	-4.3697	-0.002197	-4.2164	-0.0021199	502.7742983139158	78.858	1.8117	78.626	78.006	79.818	-0.23141					92	42	4	0	0	0	0.027866	1	9576	9576		37.028	0	1	462230	+		8871	19190	5861	5876	10460	10460					0.03624143562649351
DTIKNSDKN	9	Unmodified	_DTIKNSDKN_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7050170898438	2	517.759278	1033.504	-0.22362	-0.00011578	-3.6455	-0.0018875	-3.8691	-0.0020033	517.7570173387951	34.08	0.5021	33.856	33.64	34.142	-0.22412					24	12	3	0	0	0	0.024313	1	2516	2516		28.081	0	1	184460			8872	1685	5862	5877	10461	10461					-0.011409296670308322
DTIKTFYM	8	Unmodified	_DTIKTFYM_					0	0	0			REV__ENSG00000205301|ENST00000511113|MGAT4D	REV__ENSG00000205301|ENST00000511113|MGAT4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.78387451171875	2	509.749336	1017.48412	-0.1348	-6.8716E-05	1.265	0.00064485	1.1302	0.00057613	509.7501536553	49.689	0.18611	49.689	49.582	49.768	0					7	4	2	0	0	0	0.027866	1	5143	5143		38.806	10.924	1	78718	+		8873	28669	5863	5878	10462	10462					-0.023923969313727866
DTILQNLK	8	Unmodified	_DTILQNLK_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.8045959472656	2	472.7742	943.533846	0.35178	0.00016631	0.72371	0.00034215	1.0755	0.00050847	472.7740324318148	55.862	0.62773	55.706	55.404	56.031	-0.15602					40	16	3	0	0	0	0.027866	1	6215	6215		79.939	5.6842	1	2789100			8874	9948	5864	5879	10463	10463					0.05982054068954312
DTILYLQT	8	Unmodified	_DTILYLQT_					0	0	0			REV__nc|ENSG00000138696|O00238-2|BMPR1B;REV__ENSG00000107779|ENST00000372037|BMPR1A	REV__ENSG00000107779|ENST00000372037|BMPR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7840270996094	2	483.760758	965.506963	0.68304	0.00033043	-0.41873	-0.00020257	0.2643	0.00012786	483.76033660378425	72.628	0.80025	72.346	71.991	72.791	-0.28124					43	19	3	0	0	0	0.027866	1	8860	8860		32.812	0	1	343000	+		8875	21685;23888	5865	5880	10464	10464					0.02282945457761798
DTIQGPPFL	9	Unmodified	_DTIQGPPFL_					0	0	0			REV__ENSG00000016490|ENST00000394711|CLCA1	REV__ENSG00000016490|ENST00000394711|CLCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2601318359375	2	494.260925	986.507297	-0.63629	-0.00031449	-1.7306	-0.00085535	-2.3668	-0.0011698	494.259632801062	83.028	2.2683	83.054	82.066	84.334	0.02655					74	52	3	0	0	0	0.6504	1	10310	10310		49.442	4.9105	1	450940	+		8876	19974	5866	5881	10465	10465					0.01350365177609092
DTIQLRAGAA	10	Unmodified	_DTIQLRAGAA_					0	0	0			REV__ENST00000573308.5_1_4:16228380-16240465:+|nuORF	REV__ENST00000573308.5_1_4:16228380-16240465:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2846984863281	2	508.28018	1014.54581	-0.50812	-0.00025827	2.9042	0.0014762	2.3961	0.0012179	508.28172908857556	30.784	0.37169	30.796	30.584	30.956	0.011799					10	8	2	0	0	0	0.03519	1	2000	2000		27.882	2.3082	1	310320	+		8877	35430	5867	5882	10466	10466					0.03911670812124157
DTIQLRAGAA	10	Unmodified	_DTIQLRAGAA_					0	0	0			REV__ENST00000573308.5_1_4:16228380-16240465:+|nuORF	REV__ENST00000573308.5_1_4:16228380-16240465:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.28018	1014.54581	-0.75518	-0.00038384	1.3945	0.0007088	0.63932	0.00032495	508.2807751729782	30.496	0.37126	30.571	30.337	30.708	0.074314	-0.11249	-0.00089817	NaN	27.882	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264660	+		8878	35430	5867	5882							0.03911670812124157
DTISAINNFQ	10	Unmodified	_DTISAINNFQ_					0	0	0			REV__ENSG00000106809|ENST00000375561|OGN	REV__ENSG00000106809|ENST00000375561|OGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.272216796875	2	561.774928	1121.5353	-0.96309	-0.00054104	3.5403	0.0019888	2.5772	0.0014478	562.2794679968694	44.714	0.54982	44.614	44.392	44.942	-0.099445					14	13	2	0	0	0	0.03519	1	4241	4241		26.693	8.3685	1	206540	+		8879	21645	5868	5883	10467	10467					-0.02060356632955518
DTITHLVI	8	Unmodified	_DTITHLVI_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2629089355469	2	456.263468	910.512382	-0.11714	-5.3449E-05	0.28782	0.00013132	0.17067	7.7873E-05	456.2634835400152	63.701	0.89034	63.509	63.148	64.038	-0.19243					60	22	4	0	0	0	0.28298	1	7219	7219		119.22	25.215	1	3211700	+		8880	25473	5869	5884	10468	10468					0.053546690402299646
DTKALLER	8	Unmodified	_DTKALLER_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.25341796875	2	473.271824	944.529095	-0.35801	-0.00016943	-0.39522	-0.00018704	-0.75322	-0.00035648	473.2716011902571	30.816	0.66459	30.816	30.508	31.173	0					22	15	2	0	0	0	0.027866	1	1968	1968		94.006	3.2298	1	374790			8881	1307	5870	5885	10469	10469					0.05461169926195453
DTKEFPKVS	9	Unmodified	_DTKEFPKVS_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3050537109375	2	525.776939	1049.53933	-0.67414	-0.00035445	2.2412	0.0011784	1.5671	0.00082395	525.7780153675259	69.83	0.46278	69.563	69.368	69.831	-0.26725					19	10	2	0	0	0	0.024427	1	8127	8127		26.693	4.733	1	193670	+		8882	26868	5871	5886	10470	10470					0.016537328607682866
DTKGRQER	8	Unmodified	_DTKGRQER_					0	0	0		FYCO1|p.P391R|1|0.13|ENSG00000163820|chr3:45968162-45968162|G/C|missense_variant	FYCO1|p.P391R|1|0.13|ENSG00000163820|chr3:45968162-45968162|G/C|missense_variant	FYCO1|p.P391R|1|0.13|ENSG00000163820|chr3:45968162-45968162|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7757568359375	2	495.259779	988.505006	-0.57057	-0.00028258	-2.7629	-0.0013684	-3.3335	-0.0016509	495.25823664584243	60.622	0.75433	60.408	60.079	60.834	-0.21339					39	19	3	0	0	0	0.027866	1	6899	6899		26.693	9.3279	1	597750			8883	17665	5872	5887	10471	10471					0.010293294925190821
DTKKTPFLD	9	Unmodified	_DTKKTPFLD_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.3056030273438	2	532.784764	1063.55498	-0.33909	-0.00018066	-0.51681	-0.00027535	-0.8559	-0.00045601	532.784566078439	62.645	0.72401	62.708	62.483	63.207	0.062767					28	17	2	0	0	0	0.024397	1	7272	7272		31.53	0	1	775190	+		8884	22318	5873	5888	10472	10472					0.025740193777892273
DTKLRPLFE	9	Unmodified	_DTKLRPLFE_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8154907226562	2	559.813856	1117.61316	0.27362	0.00015318	2.6498	0.0014834	2.9234	0.0016366	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.74711	1	9827	9827		42.864	1.4377	1	35108000			8885	1572	5874	5889	10473	10473					0.05905701023084475
DTKNATQVVSA	11	Unmodified	_DTKNATQVVSA_					0	0	0			REV__nc|ENSG00000134324|Q14693|LPIN1	REV__nc|ENSG00000134324|Q14693|LPIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	567.293485	1132.57242	-1.4021	-0.00079537	1.2511	0.00070977	-0.1509	-8.5607E-05	567.2959695633751	91.788	0.56143	91.639	91.268	91.829	-0.1487					18	12	2	0	0	0	0.024768	1	11221	11221		37.508	14.929	1	62247	+		8886	23439	5875	5890	10474	10474					0.011433149128379227
DTKQQVELN	9	Unmodified	_DTKQQVELN_					0	0	0			REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2948608398438	2	537.774928	1073.5353	-0.73421	-0.00039484	3.6179	0.0019456	2.8837	0.0015508	537.7783693315887	56.3	0.14347	56.3	56.207	56.351	0					5	3	2	0	0	0	0.024181	1	6277	6277		54.722	0	1	102880	+		8887	24047	5876	5891	10475	10475					0.0014764336706321046
DTKQSALL	8	Unmodified	_DTKQSALL_					0	0	0			REV__ENSG00000182180|ENST00000372945|MRPS16	REV__ENSG00000182180|ENST00000372945|MRPS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.7370910644531	2	438.245275	874.475997	0.32946	0.00014438	-0.5712	-0.00025033	-0.24175	-0.00010594	438.2450785294356	61.894	0.48915	61.667	61.455	61.945	-0.22663					18	12	2	0	0	0	0.027866	1	7154	7154		55.504	27.622	1	173280	+		8888	27454	5877	5892	10476	10476					0.03373792143531773
DTKRWTLI	8	Unmodified	_DTKRWTLI_					0	0	0			REV__ENST00000380152.7_1_13:32929245-32929386:+|nuORF	REV__ENST00000380152.7_1_13:32929245-32929386:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2718505859375	2	516.795466	1031.57638	-0.80381	-0.00041541	3.877	0.0020036	3.0732	0.0015882	516.7973179907848	48.33	0.75914	48.33	48.105	48.864	0					49	21	3	0	0	0	0.027866	1	5002	5002		19.36	0	1	1096100	+		8889	31466	5878	5893	10477	10477					0.06185449197187154
DTLFLTVTAS	10	Unmodified	_DTLFLTVTAS_					0	0	0		nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2841186523438	2	534.284597	1066.55464	-0.37302	-0.0001993	-0.018349	-9.8037E-06	-0.39137	-0.0002091	534.2845398871997	105.79	0.63905	105.79	105.54	106.18	0.00015259					52	22	3	0	0	0	1.089	1	13528	13528		34.173	5.9183	1	294350			8890	18464	5879	5894	10478	10478					0.02402599657943938
DTLIAVPYTV	10	Unmodified	_DTLIAVPYTV_					0	0	0		ENSG00000279111|ENST00000623167|OR10X1	ENSG00000279111|ENST00000623167|OR10X1	ENSG00000279111|ENST00000623167|OR10X1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3169555664062	2	546.30279	1090.59103	-0.17016	-9.2961E-05	0.383	0.00020923	0.21283	0.00011627	546.3028648224365	90.169	0.78826	90.03	89.662	90.45	-0.13824					42	18	3	0	0	0	0.03519	1	11005	11005		31.53	7.3271	1	432980			8891	11072	5880	5895	10479	10479					0.049354765546468116
DTLKEFIQHL	10	Unmodified	_DTLKEFIQHL_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3365478515625	2	622.337695	1242.66084	-2.2816	-0.00142	0.49379	0.0003073	-1.7879	-0.0011127	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	1.1211	1	13532	13532		21.686	1.689	1	1465400	+		8892	23827	5881	5896	10480	10480					0.04921355223291357
DTLKRLLL	8	Unmodified	_DTLKRLLL_					0	0	0		ENST00000264033.5_1_11:119175703-119175820:+|nuORF	ENST00000264033.5_1_11:119175703-119175820:+|nuORF	ENST00000264033.5_1_11:119175703-119175820:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.28155517578125	2	486.316035	970.617516	-0.13953	-6.7857E-05	-4.2665	-0.0020749	-4.406	-0.0021427	486.3138695968102	89.178	0.67349	89.194	88.838	89.511	0.015907					46	15	4	0	0	0	0.027866	1	11206	11206		55.504	18.345	1	4152100			8893	11550	5882	5897	10481	10481					0.13103210236658924
DTLKRLLL	8	Unmodified	_DTLKRLLL_					0	0	0		ENST00000264033.5_1_11:119175703-119175820:+|nuORF	ENST00000264033.5_1_11:119175703-119175820:+|nuORF	ENST00000264033.5_1_11:119175703-119175820:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.28155517578125	2	486.316035	970.617516	-0.27842	-0.0001354	3.3639	0.0016359	3.0855	0.0015005	486.3175151495527	89.556	0.41667	89.572	89.342	89.759	0.015907					13	9	3	0	0	0	0.027866	1	11206	11206		55.504	18.345	1	197320			8894	11550	5882	5897	10482	10482					0.13103210236658924
DTLKSMEEAL	10	Unmodified	_DTLKSMEEAL_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8168334960938	2	568.778822	1135.54309	-0.19663	-0.00011184	-1.0296	-0.0005856	-1.2262	-0.00069743	568.7780927655314	42.882	0.42859	42.645	42.489	42.917	-0.23736					21	10	3	0	0	0	0.03519	1	3865	3865		85.161	2.9203	1	149590	+		8895	23732	5883	5898	10483	10483					-0.019259654276766014
DTLKYCKPS	9	Unmodified	_DTLKYCKPS_					0	0	0			REV__ENSG00000008018|ENST00000262193|PSMB1	REV__ENSG00000008018|ENST00000262193|PSMB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8087768554688	2	527.765517	1053.51648	-0.97971	-0.00051706	0.56816	0.00029986	-0.41155	-0.0002172	527.7654029828578	56.819	1.179	56.819	56.424	57.603	0					69	21	5	0	0	0	0.0242	1	6460	6460		79.713	5.4575	1	2824100	+		8896	19874	5884	5899	10484	10484					-0.008136095283816758
DTLLLFHLP	9	Unmodified	_DTLLLFHLP_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2757568359375	2	534.808042	1067.60153	-0.44603	-0.00023854	-0.58015	-0.00031027	-1.0262	-0.00054881	534.8075660909142	52.192	0.68951	52.008	51.705	52.395	-0.18404					22	17	2	0	0	0	0.024517	1	5407	5407		19.36	0	1	368470	+		8897	25152	5885	5900	10485	10485					0.07043503999739187
DTLLRVGKL	9	Unmodified	_DTLLRVGKL_					0	0	0			REV__nc|ENSG00000177963|Q9NPQ8-2|RIC8A	REV__nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.75555419921875	2	507.818941	1013.62333	-1.4069	-0.00071443	-0.46275	-0.00023499	-1.8696	-0.00094942	507.82098778484055	29.231	0.53971	29.231	28.947	29.487	0					28	13	3	0	0	0	0.024436	1	1784	1784		38.806	1.647	1	257590	+		8898	36976	5886	5901	10486	10486					0.1170630874833023
DTLLRVGKL	9	Unmodified	_DTLLRVGKL_					0	0	0			REV__nc|ENSG00000177963|Q9NPQ8-2|RIC8A	REV__nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.818941	1013.62333	-0.79081	-0.00040159	0.31094	0.0001579	-0.47988	-0.00024369	507.81905534807805	29.582	0.38224	29.337	29.099	29.481	-0.24524	0.1486	-0.00032083	NaN	23.042	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54936	+		8899	36976	5886	5901							0.1170630874833023
DTLLVKALL	9	Unmodified	_DTLLVKALL_					0	0	0		nc|ENSG00000167380|Q9NYT6-2|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2652282714844	2	493.318243	984.621933	-0.24636	-0.00012153	1.2305	0.00060702	0.98412	0.00048548	493.3187996218443	74.673	0.42119	74.398	74.176	74.597	-0.27573					12	9	2	0	0	0	0.024405	1	8817	8817		44.117	9.9443	1	75414			8900	18478	5887	5902	10487	10487					0.12900674659567812
DTLLVKALL	9	Unmodified	_DTLLVKALL_					0	0	0		nc|ENSG00000167380|Q9NYT6-2|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	nc|ENSG00000167380|Q9NYT6-2|ZNF226	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2642822265625	2	493.318243	984.621933	0.24832	0.0001225	0.43475	0.00021447	0.68307	0.00033697	493.3184771915125	74.629	0.34505	74.366	74.186	74.531	-0.26326					11	7	2	0	0	0	0.024294	1	8832	8832		37.159	0	1	96253			8901	18478	5887	5902	10488	10488					0.12900674659567812
DTLNAIALQY	10	Unmodified	_DTLNAIALQY_					0	0	0		ENSG00000176018|ENST00000315948|LYSMD3;nc|ENSG00000176018|Q7Z3D4-2|LYSMD3;nc|ENSG00000176018|Q7Z3D4-3|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.7826538085938	2	561.295496	1120.57644	-0.38972	-0.00021875	-2.3883	-0.0013406	-2.7781	-0.0015593	561.2947189629928	64.403	0.66668	64.168	63.902	64.568	-0.2345					23	16	2	0	0	0	0.03519	1	7377	7377		32.812	0	1	655140			8902	8604	5888	5903	10489	10489					0.02097404406526948
DTLQKLAKHY	10	Unmodified	_DTLQKLAKHY_					0	0	0		ENST00000418510.1_1_22:26043331-26044389:+|nuORF	ENST00000418510.1_1_22:26043331-26044389:+|nuORF	ENST00000418510.1_1_22:26043331-26044389:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8369750976562	2	608.837862	1215.66117	-0.10849	-6.605E-05	-1.328	-0.00080854	-1.4365	-0.00087459	608.837007262788	109.69	0.40428	109.68	109.51	109.92	-0.0094986					54	19	4	0	0	0	1.1179	1	13894	13894		19.997	0	1	4069800			8903	13938	5889	5904	10490	10490					0.061967749431460106
DTLRTFSL	8	Unmodified	_DTLRTFSL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.2849426269531	2	476.758549	951.502546	0.58897	0.0002808	-3.0756	-0.0014663	-2.4866	-0.0011855	476.7575184739882	102.02	0.61688	102.02	101.68	102.3	0					20	13	2	0	0	0	0.027866	1	13071	13071		29.15	11.785	1	109270			8904	5194	5890	5905	10491	10491					0.024854810348415413
DTLSAGLFSF	10	Unmodified	_DTLSAGLFSF_					0	0	0			REV__ENST00000435817.6_1_5:141019007-141019274:-|nuORF	REV__ENST00000435817.6_1_5:141019007-141019274:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8060913085938	2	529.263665	1056.51278	-0.28128	-0.00014887	-0.66948	-0.00035433	-0.95076	-0.0005032	529.7668093673208	50.079	0.21477	49.928	49.745	49.96	-0.1512					6	5	2	0	0	0	0.03519	1	5168	5168		34.173	3.6689	1	43844	+		8905	32448	5891	5906	10492	10492					-0.013219560305742561
DTNAATIGEY	10	Unmodified	_DTNAATIGEY_					0	0	0		ENST00000451137.6_1_1:86048903-86048948:+|nuORF	ENST00000451137.6_1_1:86048903-86048948:+|nuORF	ENST00000451137.6_1_1:86048903-86048948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8087768554688	2	527.738011	1053.46147	-0.86352	-0.00045571	1.1487	0.00060624	0.28522	0.00015052	528.2399949789414	57.365	0.34867	57.365	57.111	57.459	0					14	8	2	0	0	0	0.03519	1	6460	6460		47.657	0	1	204380			8906	14516	5892	5907	10493	10493					-0.06312324795271707
DTNITRLQL	9	Unmodified	_DTNITRLQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;CON__P05784	ENSG00000111057|ENST00000388835|KRT18;CON__P05784	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.3009033203125	2	537.301113	1072.58767	-1.0248	-0.00055065	1.1406	0.00061285	0.11576	6.2196E-05	537.3015337813486	56.777	1.005	56.613	56.313	57.318	-0.16431					57	27	4	0	0	0	0.23085	1	6309	6309		84.916	9.8722	1	3827000		+	8907	3084;511	5893	5908	10494	10494					0.054282265006804664
DTNKIARKPK	10	Unmodified	_DTNKIARKPK_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.720703125	2	585.851304	1169.68806	-1.2711	-0.00074465	1.7089	0.0010012	0.43788	0.00025654	585.8522372637856	29.24	0.30598	29.067	28.893	29.199	-0.17258					10	6	2	0	0	0	0.03519	1	1770	1770		20.947	4.2295	1	41146	+		8908	19887	5894	5909	10495	10495					0.10999883554313783
DTNYDEFNG	9	Unmodified	_DTNYDEFNG_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7075805664062	2	537.704168	1073.39378	-0.083755	-4.5035E-05	-2.168	-0.0011657	-2.2517	-0.0012108	537.7021674910234	56.968	0.58729	56.766	56.443	57.03	-0.20209					23	15	2	0	0	0	0.024427	1	6189	6189		34.173	0	1	242340			8909	2288	5895	5910	10496	10496					-0.1399777472609003
DTPEILNLS	9	Unmodified	_DTPEILNLS_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF;LIFR|p.K450Tfs*17|1|0.09|ENSG00000113594|chr5:38504064-38504065|-/ACTATCCATG|frameshift_variant	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29248046875	2	501.261122	1000.50769	0.14126	7.0809E-05	-2.4857	-0.001246	-2.3445	-0.0011752	501.259714487524	57.315	0.35748	57.113	56.926	57.283	-0.20208					15	9	2	0	0	0	0.024412	1	6244	6244		31.955	6.5047	1	137380			8910	3308	5896	5911	10497	10497					0.007457401068108993
DTPGVSLHPL	10	Unmodified	_DTPGVSLHPL_					0	0	0		nc|ENSG00000076928|Q92888-4|ARHGEF1;ARHGEF1|p.A538Rfs*14|1|0.43|ENSG00000076928|chr19:41902644-41902653|TGTGCCTTCG/-|frameshift_variant;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF	nc|ENSG00000076928|Q92888-4|ARHGEF1	nc|ENSG00000076928|Q92888-4|ARHGEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.2791137695312	2	518.277106	1034.53966	-1.0942	-0.00056711	-0.34371	-0.00017814	-1.4379	-0.00074524	518.2769763326947	61.861	0.69765	61.924	61.504	62.201	0.062767					65	18	5	0	0	0	0.941	1	7077	7077		51.335	5.3632	1	10048000			8911	18084	5897	5912	10498	10498					0.023771525806068894
DTPLRFVE	8	Unmodified	_DTPLRFVE_					0	0	0			REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.23040771484375	2	488.758549	975.502546	-0.42529	-0.00020786	-0.97584	-0.00047695	-1.4011	-0.00068482	488.7582444138121	32.243	1.1219	32.243	31.257	32.379	0					33	27	2	0	0	0	0.027866	1	2083	2083		30.504	0	1	186870	+		8912	22538	5898	5913	10499	10499					0.013814810348549145
DTPLRFVE	8	Unmodified	_DTPLRFVE_					0	0	0			REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.758549	975.502546	-0.6929	-0.00033866	-1.4067	-0.00068753	-2.0996	-0.0010262	488.7583978766214	31.837	0.83855	31.906	31.406	32.244	0.068962	-0.16826	-0.00024135	NaN	16.473	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212420	+		8913	22538	5898	5913							0.013814810348549145
DTPRATATL	9	Unmodified	_DTPRATATL_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2535095214844	2	473.253631	944.49271	-0.4263	-0.00020175	0.25935	0.00012274	-0.16694	-7.9007E-05	473.2536857845434	30.598	0.99996	30.598	30.3	31.3	0					66	23	4	0	0	0	0.31037	1	1979	1979		74.255	0.28031	1	3587400	+		8914	25416	5899	5914	10500	10500					0.018242930294718462
DTPSLRTVT	9	Unmodified	_DTPSLRTVT_					0	0	0		nc|ENSG00000155849|Q92556-3|ELMO1	nc|ENSG00000155849|Q92556-3|ELMO1	nc|ENSG00000155849|Q92556-3|ELMO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7405090332031	2	495.266739	988.518924	-0.087676	-4.3423E-05	-1.7947	-0.00088886	-1.8824	-0.00093229	495.2661451584026	53.645	0.35949	53.4	53.199	53.559	-0.2453					10	9	2	0	0	0	0.024374	1	5614	5614		32.812	17.171	1	131060			8915	18401	5900	5915	10501	10501					0.024205622009731087
DTQDQKRTL	9	Unmodified	_DTQDQKRTL_					0	0	0		TULP4-FNDC1|1|fusion;ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1	TULP4-FNDC1|1|fusion	TULP4-FNDC1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8148193359375	2	552.785827	1103.5571	-0.1282	-7.087E-05	-2.6827	-0.001483	-2.8109	-0.0015538	552.7841419973504	98.723	0.91477	98.734	98.397	99.312	0.010239					46	20	3	0	0	0	0.02366	1	12593	12593		63.534	0	1	195400			8916	7310	5901	5916	10502	10502					0.009464481156101101
DTQHLASNL	9	Unmodified	_DTQHLASNL_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.79022216796875	2	499.748713	997.482873	0.75116	0.00037539	-4.1896	-0.0020937	-3.4384	-0.0017183	499.74644632791853	70.397	0.70627	70.397	70.081	70.787	0					33	19	3	0	0	0	0.024367	1	8476	8476		52.937	10.462	1	536600	+		8917	37256	5902	5917	10503	10503					-0.015968949758985218
DTQIKEKIF	9	Unmodified	_DTQIKEKIF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3240966796875	2	561.313689	1120.61282	-0.28478	-0.00015985	-0.12442	-6.9838E-05	-0.4092	-0.00022969	561.3137082465603	68.494	0.52728	68.233	67.939	68.466	-0.26165					28	12	3	0	0	0	0.024374	1	7872	7872		40.778	5.1599	1	351990			8918	1119	5903	5918	10504	10504					0.05734281303239186
DTQLCLWDL	9	Unmodified	_DTQLCLWDL_					0	0	0		ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20;nc|ENSG00000140153|Q8TBZ3-7|WDR20;ENST00000299135.6_1_14:102606435-102676214:+|nuORF;nc|ENSG00000140153|Q8TBZ3-4|WDR20;nc|ENSG00000140153|Q8TBZ3-5|WDR20;nc|ENSG00000140153|Q8TBZ3-6|WDR20	ENSG00000140153|ENST00000342702|WDR20	ENSG00000140153|ENST00000342702|WDR20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.762975	1105.5114	-0.5675	-0.00031426	-4.3289	-0.0023972	-4.8964	-0.0027115	553.7608393979668	88.936	0.29511	88.766	88.546	88.841	-0.17053					9	6	2	0	0	0	0.024457	1	10826	10826		29.15	0	1	53616			8919	5394	5904	5919	10505	10505					-0.03713913390970447
DTQLPNPVK	9	Unmodified	_DTQLPNPVK_					0	0	0			REV__nc|ENSG00000169231|P49746-2|THBS3	REV__nc|ENSG00000169231|P49746-2|THBS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.240234375	2	506.277106	1010.53966	-1.3353	-0.00067601	0.96794	0.00049005	-0.36732	-0.00018597	506.27737862282453	30.572	0.53747	30.572	30.3	30.838	0					17	12	2	0	0	0	0.024292	1	1977	1977		58.782	7.4465	1	201260	+		8920	26339	5905	5920	10506	10506					0.03481152580627622
DTQLQRLIL	9	Unmodified	_DTQLQRLIL_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.326416015625	2	550.327131	1098.63971	-0.021848	-1.2023E-05	0.9288	0.00051114	0.90695	0.00049912	550.3277998075141	98.945	1.0124	98.945	98.479	99.492	0					46	22	3	0	0	0	0.84115	1	12646	12646		36.447	2.5251	1	260500	+		8921	22317	5906	5921	10507	10507					0.09433389914443069
DTQPILLQ	8	Unmodified	_DTQPILLQ_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2791442871094	2	464.260925	926.507297	0.62003	0.00028785	-1.7768	-0.00082489	-1.1567	-0.00053703	464.2613412687911	51.726	0.63419	51.542	51.218	51.852	-0.18404					26	16	2	0	0	0	0.027866	1	5325	5325		23.042	0	1	261490			8922	9981	5907	5922	10508	10508					0.04110365177632502
DTQTFGSKYG	10	Unmodified	_DTQTFGSKYG_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.2532348632812	2	552.253828	1102.4931	-0.19964	-0.00011025	0.87241	0.00048179	0.67277	0.00037154	552.2541224254933	110.25	0.94171	110.26	110.07	111.01	0.005928					52	29	2	0	0	0	1.1265	1	13930	13930		24.519	2.5593	1	48580	+		8923	24090	5908	5923	10509	10509					-0.05404332041325688
DTQYTCDNHQ	10	Unmodified	_DTQYTCDNHQ_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	612.7754516601562	2	612.732934	1223.45132	0.23498	0.00014398	-2.9068	-0.0017811	-2.6718	-0.0016371	612.731035289606	50.904	0.33596	50.723	50.498	50.834	-0.18071					13	8	2	0	0	0	0.03519	1	5212	5212		25.574	8.106	1	101300			8924	1711	5909	5924	10510	10510					-0.1514725579215792
DTQYTCDNHQ	10	Unmodified	_DTQYTCDNHQ_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	612.732934	1223.45132	-0.90388	-0.00055383	-2.381	-0.0014589	-3.2849	-0.0020128	612.7312709650389	50.856	0.29793	50.745	50.488	50.786	-0.11163	-0.0035005	0.00041623	NaN	32.812	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182050			8925	1711	5909	5924							-0.1514725579215792
DTQYTCDNHQ	10	Unmodified	_DTQYTCDNHQ_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	612.732934	1223.45132	0.047249	2.8951E-05	-2.7682	-0.0016962	-2.721	-0.0016672	612.7311243864009	51.053	0.26413	50.777	50.589	50.853	-0.27643	0.028501	-5.8275E-05	NaN	32.812	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134760			8926	1711	5909	5924							-0.1514725579215792
DTRPKVSSLL	10	Unmodified	_DTRPKVSSLL_					0	0	0		SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.3241577148438	2	558.324588	1114.63462	-0.24155	-0.00013486	-0.053943	-3.0118E-05	-0.2955	-0.00016498	558.3245220458238	98.866	1.0033	98.698	98.24	99.243	-0.16862					43	22	3	0	0	0	1.0816	1	12225	12225		35.152	0	1	265440			8927	5395	5910	5925	10511	10511					0.081890860518115
DTRQLAHGPL	10	Unmodified	_DTRQLAHGPL_					0	0	0			REV__ENST00000396501.8_2_17:7490054-7490866:+|nuORF	REV__ENST00000396501.8_2_17:7490054-7490866:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7667846679688	2	554.298904	1106.58326	-0.25084	-0.00013904	-2.5753	-0.0014275	-2.8261	-0.0015665	554.2969864677345	61.851	0.96343	61.593	61.133	62.097	-0.25725					56	23	4	0	0	0	0.03519	1	6888	6888		40.778	11.629	1	977370	+		8928	31737	5911	5926	10512	10512					0.0342276207775285
DTRRPEKVS	9	Unmodified	_DTRRPEKVS_					0	0	0		ENST00000432366.6_2_7:86783821-86792930:+|nuORF	ENST00000432366.6_2_7:86783821-86792930:+|nuORF	ENST00000432366.6_2_7:86783821-86792930:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.7671508789062	2	544.296362	1086.57817	-0.23582	-0.00012835	3.4187	0.0018608	3.1829	0.0017324	544.2980946090736	46.813	0.71365	46.543	46.229	46.943	-0.26939					36	19	2	0	0	0	0.024397	1	4499	4499		39.253	6.4404	1	1178900			8929	14203	5912	5927	10513	10513					0.038344582151466966
DTRSSAGRLL	10	Unmodified	_DTRSSAGRLL_					0	0	0			REV__ENST00000307169.3_1_14:36003904-36004144:+|nuORF	REV__ENST00000307169.3_1_14:36003904-36004144:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2980346679688	2	538.296362	1074.57817	-0.49567	-0.00026682	4.3493	0.0023412	3.8536	0.0020744	538.2986391789228	59.397	0.88911	59.483	59.206	60.095	0.085682					58	23	4	0	0	0	0.75651	1	6694	6694		63.534	4.7519	1	7875800	+		8930	30131	5913	5928	10514	10514					0.043864582151627474
DTRVIHIKT	9	Unmodified	_DTRVIHIKT_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.3033447265625	2	541.819473	1081.62439	-0.71764	-0.00038883	-0.29839	-0.00016167	-1.016	-0.0005505	541.8191556762434	47.376	0.95176	47.376	46.892	47.843	0					64	27	4	0	0	0	0.024359	1	4699	4699		40.058	0	1	3111800			8931	10516	5914	5929	10515	10515					0.0868452311724468
DTRVIHIKT	9	Unmodified	_DTRVIHIKT_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.3031616210938	2	541.819473	1081.62439	-1.4707	-0.00079686	0.33812	0.0001832	-1.1326	-0.00061366	541.8194498207185	47.296	0.82774	47.355	46.88	47.708	0.059097					59	23	4	0	0	0	0.024371	1	4636	4636		28.577	0	1	2880400			8932	10516	5914	5929	10516	10516					0.0868452311724468
DTSGAPIIGI	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DTSGAPIIGI_					1	0	0			REV__ENSG00000100422|ENST00000216264|CERK	REV__ENSG00000100422|ENST00000216264|CERK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2621154785156	2	493.263665	984.512776	0.71752	0.00035393	-0.58014	-0.00028616	0.13738	6.7766E-05	493.26329528446615	71.329	1.2418	71.123	70.659	71.901	-0.20614					67	29	4	0	0	0	1.0004	1	8341	8341		45.952	6.6991	1	1639500	+		8933	21114	5915	5930	10517	10517					0.019900439694424676
DTSKPYSPVK	10	Unmodified	_DTSKPYSPVK_					0	0	0			REV__ENSG00000138483|ENST00000261058|CCDC54	REV__ENSG00000138483|ENST00000261058|CCDC54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2703247070312	2	561.295496	1120.57644	-0.81177	-0.00045564	4.0487	0.0022725	3.2369	0.0018169	561.2984893856913	26.523	0.18411	26.287	26.232	26.416	-0.23603					9	4	3	0	0	0	0.03519	1	1396	1396		27.047	0	1	328110	+		8934	23861	5916	5931	10518	10518					0.02097404406526948
DTSLPLAKV	9	Unmodified	_DTSLPLAKV_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2783508300781	2	472.276575	942.538597	0.36088	0.00017044	-1.0345	-0.00048855	-0.67358	-0.00031812	472.2758417221682	56.235	1.2855	56.235	55.249	56.535	0					51	35	2	0	0	0	0.32811	1	6274	6274		71.877	2.2498	1	5548200			8935	9697	5917	5932	10519	10519					0.0650293821172454
DTSLPLAKV	9	Unmodified	_DTSLPLAKV_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2774353027344	2	472.276575	942.538597	-0.21493	-0.00010151	-0.55669	-0.00026291	-0.77163	-0.00036442	472.2760642599516	56.12	1.4265	56.218	55.819	57.246	0.097893					73	39	3	0	0	0	0.2508	1	6168	6168		82.241	2.7895	1	5633100			8936	9697	5917	5932	10520	10520					0.0650293821172454
DTSMIEKLLSY	11	Unmodified	_DTSMIEKLLSY_					0	0	0		nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C	nc|ENSG00000174501|Q5JPF3|ANKRD36C	nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.7767333984375	3	433.888211	1298.6428	-0.37481	-0.00016262	4.0018	0.0017363	3.627	0.0015737	433.8898272121801	29.262	0.5571	29.089	28.808	29.365	-0.17258					26	12	3	0	0	0	0.024742	1	1804	1804		32.034	0.39986	1	239720			8937	8476	5918	5933	10521	10521					0.005428521862768321
DTTDLPLPT	9	Unmodified	_DTTDLPLPT_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.747802734375	2	486.747847	971.481142	0.78937	0.00038422	-2.0293	-0.00098778	-1.24	-0.00060356	486.74701300065806	106.52	0.28253	106.36	106.16	106.44	-0.16132					19	13	2	0	0	0	0.62163	1	13237	13237		51.335	0	1	177420	+		8938	24763	5919	5934	10522	10522					-0.005739487845289659
DTTKMWKLLK	10	Unmodified	_DTTKMWKLLK_					0	0	0			REV__ENST00000377989.8_2_6:25115289-25137913:-|nuORF	REV__ENST00000377989.8_2_6:25115289-25137913:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	632.86376953125	2	632.360116	1262.70568	0.83791	0.00052986	1.698	0.0010738	2.5359	0.0016036	632.3609673510513	105.96	0.37948	105.96	105.76	106.14	0					22	16	2	0	0	0	1.1307	1	13604	13604		26.693	4.733	1	106320	+		8939	31389	5920	5935	10523	10523					0.0848346276495704
DTTKMWKLLK	10	Unmodified	_DTTKMWKLLK_					0	0	0			REV__ENST00000377989.8_2_6:25115289-25137913:-|nuORF	REV__ENST00000377989.8_2_6:25115289-25137913:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	632.8650512695312	2	632.360116	1262.70568	-1.2957	-0.00081933	3.3537	0.0021207	2.058	0.0013014	632.361969490638	105.46	0.64989	105.33	105.02	105.67	-0.13099					46	20	4	0	0	0	1.0992	1	13110	13110		32.812	4.7309	1	2202000	+		8940	31389	5920	5935	10524	10524					0.0848346276495704
DTTLAVSTF	9	Unmodified	_DTTLAVSTF_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.80712890625	2	477.742565	953.470577	0.73218	0.00034979	3.5852	0.0017128	4.3173	0.0020626	477.74422443841286	102.42	0.41843	102.29	102.03	102.45	-0.12931					14	9	2	0	0	0	0.024457	1	12726	12726		37.159	16.677	1	49176			8941	1054	5921	5936	10525	10525					-0.008019314389457577
DTTPARAF	8	Unmodified	_DTTPARAF_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.72198486328125	2	439.721967	877.429381	0.62162	0.00027334	-1.7928	-0.00078832	-1.1712	-0.00051498	439.7211350198344	101.75	0.64523	101.58	101.28	101.93	-0.17178					25	14	2	0	0	0	1.0574	1	12632	12632		25.45	1.2474	1	234410			8942	1500	5922	5937	10526	10526					-0.014236476877613313
DTTSDFLPKEG	11	Unmodified	_DTTSDFLPKEG_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.2858276367188	2	605.285325	1208.5561	-1.1989	-0.00072566	1.9757	0.0011959	0.77686	0.00047022	605.2863716977504	57.733	0.79837	57.555	57.06	57.859	-0.17775					62	20	4	0	0	0	0.96599	1	6290	6290		44.377	1.981	1	3666200	+		8943	23008	5923	5938	10527	10527					-0.039838110439632146
DTTTQVVTI	9	Unmodified	_DTTTQVVTI_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7718505859375	2	489.261122	976.507691	-0.053589	-2.6219E-05	-4.0768	-0.0019946	-4.1304	-0.0020208	489.25968700611423	42.837	0.14293	42.863	42.754	42.897	0.026012					5	3	2	0	0	0	0.024021	1	3899	3899		40.778	0	1	91202	+		8944	20598	5924	5939	10528	10528					0.01849740106831632
DTTTVHISVE	10	Unmodified	_DTTTVHISVE_					0	0	0		ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	ENSG00000101542|ENST00000262717|CDH20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.3219604492188	2	551.274761	1100.53497	0.54704	0.00030157	-2.3113	-0.0012742	-1.7643	-0.00097259	551.2729250459474	62.9	0.76384	62.954	62.719	63.483	0.054104					42	19	3	0	0	0	0.03519	1	7261	7261		34.173	5.023	1	530110			8945	2333	5925	5940	10529	10529					-0.01127776352791443
DTTVCVLAL	9	Unmodified	_DTTVCVLAL_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.7494812011719	2	467.749336	933.484119	0.78358	0.00036652	-0.51051	-0.00023879	0.27307	0.00012773	467.7490013664242	69.71	1.0232	69.417	68.896	69.92	-0.29291					63	25	4	0	0	0	0.40179	1	8373	8373		65.803	0	1	1377500			8946	8804	5926	5941	10530	10530					0.014716030686258819
DTVKTLVRGT	10	Unmodified	_DTVKTLVRGT_					0	0	0			REV__ENST00000539960.1_1_11:60665249-60666641:-|nuORF	REV__ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3171997070312	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.118	1	11043	11043		30.318	1.1477	1	17400000	+		8947	21840	5927	5942	10531	10531					0.07820799534783873
DTVPRGECK	9	Unmodified	_DTVPRGECK_					0	0	0			REV__ENST00000366221.3_2_1:1510630-1510894:+|nuORF	REV__ENST00000366221.3_2_1:1510630-1510894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7638854980469	2	502.745116	1003.47568	-0.26359	-0.00013252	0.86512	0.00043493	0.60153	0.00030242	502.74490312000063	31.391	1.5508	31.46	30.58	32.131	0.068962					50	37	3	0	0	0	0.024457	1	2039	2039		45.952	12.436	1	97323	+		8948	30969	5928	5943	10532	10532					-0.025919508479773867
DTVPWYLR	8	Unmodified	_DTVPWYLR_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.7984008789062	2	525.274367	1048.53418	0.1832	9.6232E-05	4.1841	0.0021978	4.3673	0.002294	525.276328959428	22.029	0.33256	21.84	21.531	21.863	-0.18894					11	6	2	0	0	0	0.027866	1	734	734		15.642	0	1	33592			8949	18235	5929	5944	10533	10533					0.01185473788791569
DTVRAGRRG	9	Unmodified	_DTVRAGRRG_					0	0	0			REV__nc|ENSG00000196711|Q6UXT8-2|ALKAL1	REV__nc|ENSG00000196711|Q6UXT8-2|ALKAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.26666259765625	2	494.275764	986.536974	0.40093	0.00019817	1.8178	0.00089851	2.2188	0.0010967	494.27657483422695	49.081	0.81403	49.081	48.585	49.399	0					42	22	3	0	0	0	0.024381	1	4976	4976		45.952	1.8352	1	1238100	+		8950	28218	5930	5945	10534	10534					0.04316741966340487
DTVRDNLVI	9	Unmodified	_DTVRDNLVI_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.80078125	2	522.787838	1043.56112	-0.4888	-0.00025554	-1.2329	-0.00064452	-1.7217	-0.00090006	522.7868811255262	49.021	0.78214	49.021	48.654	49.437	0					30	21	2	0	0	0	0.023454	1	4995	4995		62.107	0	1	474360	+		8951	23682	5931	5946	10535	10535					0.04108537609317864
DTVVALQAL	9	Unmodified	_DTVVALQAL_					0	0	0		nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.26947021484375	2	465.26875	928.522947	-0.079	-3.6756E-05	-0.039001	-1.8146E-05	-0.118	-5.4902E-05	465.2687033618373	66.397	0.63419	66.115	65.75	66.384	-0.28149					50	18	5	0	0	0	0.50848	1	7844	7844		58.782	4.0056	1	12796000			8952	7579	5932	5947	10536	10536					0.055826516946467564
DTVVVRTY	8	Unmodified	_DTVVVRTY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7586669921875	2	476.758549	951.502546	0.34901	0.00016639	-1.4907	-0.00071071	-1.1417	-0.00054432	476.75772494847956	103.11	2.084	103.12	102.24	104.32	0.0054245					130	51	5	0	0	0	1.0574	1	13263	13263		26.796	2.5934	1	5192800			8953	6479;18400	5933	5948	10537	10537					0.0248548103485291
DTWESRNFSV	10	Unmodified	_DTWESRNFSV_					0	0	0			REV__ENST00000507620.2_1_3:142215312-142218583:-|nuORF	REV__ENST00000507620.2_1_3:142215312-142218583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2408142089844	3	414.191282	1239.55202	-0.34451	-0.00014269	-2.7106	-0.0011227	-3.0551	-0.0012654	414.52476666260156	30.719	0.46066	30.793	30.626	31.087	0.074316					14	10	3	0	0	0	0.03519	1	1946	1946		30.569	14.039	1	32775	+		8954	34048	5934	5949	10538	10538					-0.05817855747000067
DTWIQCRY	8	Unmodified	_DTWIQCRY_					0	0	0		ENST00000491977.1_1_2:89986389-89986853:+|nuORF	ENST00000491977.1_1_2:89986389-89986853:+|nuORF	ENST00000491977.1_1_2:89986389-89986853:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2794189453125	2	542.747659	1083.48076	-0.40013	-0.00021717	-3.9449	-0.0021411	-4.345	-0.0023583	542.7454345501617	61.487	0.77699	61.273	60.96	61.737	-0.21375					38	18	3	0	0	0	0.027866	1	6919	6919		53.351	14.545	1	989290			8955	15472	5935	5950	10539	10539					-0.05763646985360538
DTWQTTCSVL	10	Carbamidomethyl (C)	_DTWQTTC(Carbamidomethyl (C))SVL_	DTWQTTC(1)SVL		DTWQTTC(67)SVL		0	1	0		ENST00000473046.1_1_1:183252983-183259825:-|nuORF;nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2	ENST00000473046.1_1_1:183252983-183259825:-|nuORF	ENST00000473046.1_1_1:183252983-183259825:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.77392578125	2	605.774071	1209.53359	0.24949	0.00015113	-0.2678	-0.00016223	-0.01831	-1.1092E-05	605.7737629045049	69.883	2.2667	69.59	67.896	70.163	-0.29292					146	59	4	0	0	0	0.69662	1	8409	8409		67.494	12.717	1	2444800			8956	6571	5936	5951	10540	10540	81				-0.06279733713222413
DTWYLNKS	8	Unmodified	_DTWYLNKS_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2855834960938	2	513.748182	1025.48181	-0.89147	-0.00045799	0.058217	2.9909E-05	-0.83325	-0.00042808	513.7481004479189	54.899	0.67583	54.997	54.733	55.409	0.098015					32	18	2	0	0	0	0.027866	1	6025	6025		27.882	11.409	1	367770	+		8957	20681	5937	5952	10541	10541					-0.02991109344816323
DTYVLYAE	8	Unmodified	_DTYVLYAE_					0	0	0			REV__nc|ENSG00000141934|O43688-3|PLPP2	REV__nc|ENSG00000141934|O43688-3|PLPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2684020996094	2	487.22929	972.444028	-0.56229	-0.00027396	-1.0807	-0.00052657	-1.643	-0.00080053	487.2283722812474	53.659	0.57917	53.511	53.31	53.889	-0.14723					19	15	2	0	0	0	0.027866	1	5824	5824		33.516	5.2613	1	200950	+		8958	24126	5938	5953	10542	10542					-0.04329620330281614
DTYWNRYQ	8	Unmodified	_DTYWNRYQ_					0	0	0			REV__nc|ENSG00000154645|Q9H9P2-2|CHODL	REV__nc|ENSG00000154645|Q9H9P2-2|CHODL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.27685546875	2	573.254163	1144.49377	-1.2339	-0.00070731	3.9423	0.0022599	2.7085	0.0015526	573.2561761153244	25.943	0.12394	25.779	25.674	25.798	-0.16331					4	2	2	0	0	0	0.027866	1	1240	1240		30.504	0	1	73979	+		8959	24968	5939	5954	10543	10543					-0.072694926016311
DTYYYRRRHRH	11	Unmodified	_DTYYYRRRHRH_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18;ENST00000507405.5_1_5:138755893-138773164:-|nuORF	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7530517578125	3	541.606423	1621.79744	-1.3498	-0.00073103	-2.2895	-0.00124	-3.6392	-0.001971	541.6036652730614	38.336	0.16151	38.117	37.988	38.15	-0.21849					6	4	2	0	0	0	0.024902	1	3141	3141		1.4188	0	1	103090			8960	8043	5940	5955	10544	10544					0.011412822263309863
DVAAILFW	8	Unmodified	_DVAAILFW_					0	0	0		ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.26910400390625	2	467.755278	933.496004	0.2883	0.00013485	-4.0478	-0.0018934	-3.7595	-0.0017585	467.7532558146644	56.482	0.50267	56.58	56.283	56.786	0.097897					23	13	2	0	0	0	0.027866	1	6211	6211		21.702	1.2205	1	324860			8961	12903	5941	5956	10545	10545					0.02659587874143199
DVAAILFW	8	Unmodified	_DVAAILFW_					0	0	0		ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	467.755278	933.496004	-0.032821	-1.5352E-05	-4.1484	-0.0019404	-4.1812	-0.0019558	467.7532363528189	56.724	0.72243	56.557	56.245	56.967	-0.1672	-0.040185	-2.7186E-05	NaN	21.702	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	819340			8962	12903	5941	5956							0.02659587874143199
DVAAILFW	8	Unmodified	_DVAAILFW_					0	0	0		ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	467.755278	933.496004	0.36644	0.0001714	-4.6101	-0.0021564	-4.2437	-0.001985	467.75294785201146	56.797	0.70837	56.595	56.288	56.996	-0.20209	-0.0023248	-0.00045911	NaN	21.702	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731510			8963	12903	5941	5956							0.02659587874143199
DVAAILFW	8	Unmodified	_DVAAILFW_					0	0	0		ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	ENST00000368690.7_1_1:153606535-153606622:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	467.755278	933.496004	0.11049	5.1683E-05	-4.205	-0.0019669	-4.0945	-0.0019152	467.7531477987574	56.79	1.2436	56.565	56.189	57.432	-0.2248	-0.031775	-8.0122E-05	NaN	21.702	49	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	829610			8964	12903	5941	5956							0.02659587874143199
DVAIALFVNL	10	Unmodified	_DVAIALFVNL_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__ENSG00000081248|ENST00000362061|CACNA1S;REV__nc|ENSG00000151067|Q13936-17|CACNA1C;REV__nc|ENSG00000157388|Q01668-2|CACNA1D;REV__nc|ENSG00000102001|O60840-5|CACNA1F;REV__nc|ENSG00000141837|O00555-5|CACNA1A;REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2959594726562	2	537.813325	1073.6121	-1.3514	-0.0007268	-2.7398	-0.0014735	-4.0912	-0.0022003	537.8117982448166	38.237	1.0278	38.155	37.503	38.531	-0.082516					72	28	4	0	0	0	0.03519	1	3093	3093		39.253	13.679	1	2027000	+		8965	20677;28400;24748;24120;24615;36811;21275	5942	5957	10546	10546					0.07823486654183398
DVARDLLY	8	Unmodified	_DVARDLLY_					0	0	0			REV__ENSG00000169410|ENST00000618819|PTPN9	REV__ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7585144042969	2	482.758549	963.502546	-0.057879	-2.7942E-05	0.14624	7.06E-05	0.088364	4.2659E-05	482.7584136896763	49.623	1.0199	49.344	49.011	50.031	-0.27977					58	26	4	0	0	0	0.95679	1	4993	4993		44.117	1.6423	1	2214700	+		8966	26365	5943	5958	10547	10547					0.019334810348595965
DVAVYFIR	8	Unmodified	_DVAVYFIR_					0	0	0		nc|ENSG00000166526|P17036-2|ZNF3;ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	nc|ENSG00000166526|P17036-2|ZNF3	nc|ENSG00000166526|P17036-2|ZNF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2960510253906	2	491.77146	981.528367	0.3692	0.00018156	0.52219	0.0002568	0.89139	0.00043836	491.77013647859394	57.35	0.80188	57.175	56.769	57.571	-0.1749					41	21	3	0	0	0	0.027866	1	6351	6351		31.955	0	1	236990			8967	7576	5944	5959	10548	10548					0.03686375277140996
DVAVYFIR	8	Unmodified	_DVAVYFIR_					0	0	0		nc|ENSG00000166526|P17036-2|ZNF3;ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	nc|ENSG00000166526|P17036-2|ZNF3	nc|ENSG00000166526|P17036-2|ZNF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.77146	981.528367	-0.055361	-2.7225E-05	1.3002	0.00063941	1.2449	0.00061219	491.7709693557863	57.236	0.66761	57.236	56.936	57.603	0	0.053578	-5.4526E-06	NaN	30.504	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267680			8968	7576	5944	5959							0.03686375277140996
DVAVYFIR	8	Unmodified	_DVAVYFIR_					0	0	0		nc|ENSG00000166526|P17036-2|ZNF3;ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	nc|ENSG00000166526|P17036-2|ZNF3	nc|ENSG00000166526|P17036-2|ZNF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.77146	981.528367	-0.40308	-0.00019822	1.9642	0.00096593	1.5611	0.00076771	491.77104235292654	57.04	0.58271	57.136	56.846	57.429	0.095306	-0.046554	0.00064758	NaN	30.504	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211460			8969	7576	5944	5959							0.03686375277140996
DVAYNLKF	8	Unmodified	_DVAYNLKF_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7813720703125	2	485.255643	968.496732	0.65336	0.00031705	-0.54498	-0.00026446	0.10837	5.2589E-05	485.25516169112154	70.757	1.1345	70.757	70.355	71.489	0					50	27	3	0	0	0	0.027866	1	8536	8536		18.324	0	1	956530	+		8970	20836	5945	5960	10549	10549					0.011223825231923001
DVCGLLPFLN	10	Unmodified	_DVCGLLPFLN_					0	0	0		ENST00000486045.1_1_16:109134-109779:-|nuORF;ENSG00000007384|ENST00000262316|RHBDF1	ENST00000486045.1_1_16:109134-109779:-|nuORF	ENST00000486045.1_1_16:109134-109779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.8213500976562	2	545.78371	1089.55287	-0.55585	-0.00030337	-3.4675	-0.0018925	-4.0233	-0.0021959	545.7817239878666	64.057	0.64993	63.806	63.48	64.13	-0.25141					45	17	3	0	0	0	0.03519	1	7445	7445		24.519	1.9395	1	3719400			8971	819	5946	5961	10550	10550					0.011672673683733592
DVCKQWRSI	9	Unmodified	_DVCKQWRSI_					0	0	0			REV__ENSG00000170364|ENST00000358065|SETMAR	REV__ENSG00000170364|ENST00000358065|SETMAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.7546997070312	2	567.789858	1133.56516	-0.808	-0.00045878	0.57294	0.00032531	-0.23506	-0.00013346	567.7901580559211	61.046	0.56668	60.87	60.597	61.164	-0.1761					27	13	3	0	0	0	0.024209	1	6793	6793		47.657	0	1	309880	+		8972	26459	5947	5962	10551	10551					0.0037230383138648904
DVCLDNCFR	9	Unmodified	_DVCLDNCFR_					0	0	0			REV__DCUN1D3|p.P122H|1|0.26|ENSG00000188215|chr16:20862174-20862174|G/T|missense_variant	REV__DCUN1D3|p.P122H|1|0.26|ENSG00000188215|chr16:20862174-20862174|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.7799072265625	2	542.731151	1083.44775	-1.2049	-0.00065395	0.6452	0.00035017	-0.55973	-0.00030378	542.7314365103882	35.117	0.53947	34.93	34.641	35.18	-0.18675					23	13	2	0	0	0	0.024397	1	2603	2603		47.657	23.138	1	790630	+		8973	19656	5948	5963	10552	10552					-0.09063597099725484
DVDAAYMIK	9	Unmodified	_DVDAAYMIK_					0	0	0		CON__P07744	CON__P07744	CON__P07744	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8147583007812	2	513.252243	1024.48993	-0.83751	-0.00042986	0.46387	0.00023808	-0.37365	-0.00019177	513.2524630844365	45.14	0.48569	44.991	44.662	45.148	-0.1488					19	13	2	0	0	0	0.024354	1	4289	4289		30.504	18.297	1	155400		+	8974	513	5949	5964	10553	10553					-0.021332984196988036
DVDASLLQH	9	Unmodified	_DVDASLLQH_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2975769042969	2	499.251089	996.487624	-0.5233	-0.00026126	-0.40914	-0.00020426	-0.93244	-0.00046552	499.250857864304	61.895	0.1087	61.895	61.832	61.941	0					4	2	2	0	0	0	0.024323	1	7180	7180		44.117	5.3107	1	53188	+		8975	20516	5950	5965	10554	10554					-0.010760108331282936
DVDCDLGLPS	10	Unmodified	_DVDCDLGLPS_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2505493164062	2	517.228965	1032.44338	-0.42222	-0.00021838	-0.20813	-0.00010765	-0.63035	-0.00032603	517.2281234939295	46.739	0.12806	46.545	46.481	46.609	-0.19387					5	3	2	0	0	0	0.03519	1	4513	4513		26.693	3.6504	1	65324			8976	9246	5951	5966	10555	10555					-0.07154783041642077
DVDCLPLPR	9	Unmodified	_DVDCLPLPR_					0	0	0		ENSG00000114737|ENST00000348721|CISH;nc|ENSG00000114737|Q9NSE2-2|CISH;nc|ENSG00000114737|Q9NSE2-3|CISH;ENST00000491847.1_1_3:50645040-50646098:-|nuORF	ENSG00000114737|ENST00000348721|CISH	ENSG00000114737|ENST00000348721|CISH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8218383789062	2	514.265684	1026.51682	-0.79051	-0.00040653	-3.267	-0.0016801	-4.0575	-0.0020866	514.2638847023406	56.511	0.53992	56.609	56.246	56.786	0.097897					22	14	2	0	0	0	0.024436	1	6217	6217		38.806	0	1	221620			8977	3378	5952	5967	10556	10556					0.0046181019147297775
DVDEVQMF	8	Unmodified	_DVDEVQMF_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.7803955078125	2	491.71295	981.411348	-1.1344	-0.00055781	0.13278	6.5291E-05	-1.0016	-0.00049252	491.7119162781014	26.71	0.45614	26.474	26.378	26.834	-0.23603					15	10	2	0	0	0	0.027866	1	1451	1451		38.806	5.2906	1	89008	+		8978	22882	5953	5968	10557	10557					-0.08010150724783216
DVDFTANLD	9	Unmodified	_DVDFTANLD_					0	0	0			REV__ENSG00000183763|ENST00000331456|TRAIP	REV__ENSG00000183763|ENST00000331456|TRAIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2753601074219	2	505.227279	1008.44001	-0.71633	-0.00036191	2.6214	0.0013244	1.9051	0.0009625	505.2292934406043	56.728	0.43026	56.563	56.35	56.78	-0.16432					21	11	3	0	0	0	0.024263	1	6341	6341		34.173	0	1	130910	+		8979	27606	5954	5969	10558	10558					-0.06387709823991372
DVDGNIVNEV	10	Unmodified	_DVDGNIVNEV_					0	0	0		ENSG00000116194|ENST00000234816|ANGPTL1	ENSG00000116194|ENST00000234816|ANGPTL1	ENSG00000116194|ENST00000234816|ANGPTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7775268554688	2	537.259111	1072.50367	-0.90891	-0.00048832	0.027182	1.4604E-05	-0.88172	-0.00047371	537.2589022552155	56.994	0.44791	57.09	56.945	57.392	0.095306					17	11	2	0	0	0	0.03519	1	6320	6320		58.23	3.4536	1	86426			8980	3531	5955	5970	10559	10559					-0.029683493869015365
DVDPKVKL	8	Unmodified	_DVDPKVKL_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.29010009765625	2	457.271293	912.528032	1.1898	0.00054408	-0.28294	-0.00012938	0.9069	0.0004147	457.2711960027602	85.878	1.2124	85.878	84.958	86.171	0					54	28	3	0	0	0	0.027866	1	10794	10794		125.81	40.455	1	288350			8981	7442	5956	5971	10560	10560					0.06826955557278325
DVDRGPIMP	9	Unmodified	_DVDRGPIMP_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2875061035156	2	500.250034	998.485516	-0.69612	-0.00034823	-2.2437	-0.0011224	-2.9398	-0.0014706	500.2487958413041	55.786	0.83654	55.884	55.598	56.435	0.097984					37	22	2	0	0	0	0.024294	1	6077	6077		45.952	0	1	283250			8982	3413	5957	5972	10561	10561					-0.01378762842591641
DVDRGPIMP	9	Unmodified	_DVDRGPIMP_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	500.250034	998.485516	-0.019886	-9.9479E-06	-2.8262	-0.0014138	-2.8461	-0.0014238	500.2484728169882	56.087	0.74925	56.087	55.822	56.571	0	0.081618	-0.00023389	NaN	45.952	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257410			8983	3413	5957	5972							-0.01378762842591641
DVDRGPIMP	9	Unmodified	_DVDRGPIMP_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.250034	998.485516	-0.42362	-0.00021192	-2.5088	-0.001255	-2.9324	-0.001467	500.24843792787186	56.202	0.87297	56.046	55.742	56.614	-0.15601	0.040006	8.3693E-05	NaN	45.952	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303780			8984	3413	5957	5972							-0.01378762842591641
DVDSSLPRTT	10	Unmodified	_DVDSSLPRTT_					0	0	0			REV__ENST00000601464.5_1_19:41120174-41122801:+|nuORF	REV__ENST00000601464.5_1_19:41120174-41122801:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3170166015625	2	545.772385	1089.53022	-0.20447	-0.0001116	4.3178	0.0023565	4.1133	0.002245	545.7745147301732	88.554	1.2271	88.554	88.128	89.355	0					39	26	2	0	0	0	0.03519	1	11129	11129		20.837	0	1	235300	+		8985	30315	5958	5973	10562	10562					-0.010966604955683579
DVDWFQKY	8	Unmodified	_DVDWFQKY_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.7723388671875	2	550.756007	1099.49746	-0.37752	-0.00020792	2.9262	0.0016116	2.5487	0.0014037	551.2590194505781	48.937	0.17804	48.755	48.631	48.809	-0.18206					5	4	2	0	0	0	0.027866	1	4877	4877		88.643	0	1	81196	+		8986	28725	5959	5974	10563	10563					-0.04830822827761949
DVDYRYLD	8	Unmodified	_DVDYRYLD_					0	0	0			REV__ENSG00000088812|ENST00000262919|ATRN	REV__ENSG00000088812|ENST00000262919|ATRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2866821289062	2	529.743096	1057.47164	0.24662	0.00013065	2.013	0.0010664	2.2596	0.001197	530.2461149664624	84.996	1.5887	84.793	84.211	85.799	-0.20329					56	37	2	0	0	0	0.027866	1	10347	10347		39.253	10.103	1	85322	+		8987	20822	5960	5975	10564	10564					-0.05479717070033985
DVEDFAEKAL	10	Unmodified	_DVEDFAEKAL_					0	0	0			REV__ENSG00000116863|ENST00000373178|ADPRS	REV__ENSG00000116863|ENST00000373178|ADPRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.8167724609375	2	568.777136	1135.53972	-0.56324	-0.00032036	1.8242	0.0010376	1.261	0.00071721	569.2795051568397	42.96	0.4299	42.734	42.559	42.989	-0.22597					15	10	2	0	0	0	0.03519	1	3907	3907		65.465	17.808	1	146430	+		8988	22310	5961	5976	10565	10565					-0.022628922100466298
DVEELGLNF	9	Unmodified	_DVEELGLNF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3208618164062	2	518.253297	1034.49204	-0.28614	-0.0001483	0.0015051	7.8E-07	-0.28464	-0.00014752	518.253251419474	68.083	2.2723	68.083	67.682	69.954	0					122	58	5	0	0	0	0.024292	1	8124	8124		40.778	12.697	1	2027500			8989	856	5962	5977	10566	10566					-0.023825464102401384
DVEIAKQSV	9	Unmodified	_DVEIAKQSV_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1;ENST00000506450.1_1_4:25624416-25624897:+|nuORF	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2642822265625	2	494.769114	987.523675	0.14282	7.0663E-05	1.7491	0.00086538	1.8919	0.00093604	494.77039689028754	74.774	0.54369	74.511	74.231	74.774	-0.26326					14	12	2	0	0	0	0.023274	1	8832	8832		87.696	0	1	130950			8990	3303	5963	5978	10567	10567					0.029414463437205995
DVEKDGLII	9	Unmodified	_DVEKDGLII_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.27447509765625	2	501.279315	1000.54408	-0.38877	-0.00019488	-0.089796	-4.5013E-05	-0.47857	-0.0002399	501.7813194189147	49.123	0.608	48.971	48.646	49.254	-0.15277					23	16	2	0	0	0	0.022083	1	4981	4981		99.375	14.459	1	111640	+		8991	19683	5964	5979	10568	10568					0.04382617003534506
DVELDCHRGQ	10	Unmodified	_DVELDCHRGQ_					0	0	0			REV__nc|ENSG00000134376|P82279-5|CRB1	REV__nc|ENSG00000134376|P82279-5|CRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.7677612304688	2	586.261662	1170.50877	-0.53338	-0.0003127	-0.88433	-0.00051845	-1.4177	-0.00083115	586.2613351485381	79.777	0.58797	79.558	79.327	79.915	-0.21923					20	13	2	0	0	0	0.03519	1	9552	9552		56.721	15.294	1	650450	+		8992	19614	5965	5980	10569	10569					-0.06966368795929156
DVELLPVGNI	10	Unmodified	_DVELLPVGNI_					0	0	0			REV__nc|ENSG00000145216|Q6UN15-4|FIP1L1	REV__nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2744140625	2	534.800414	1067.58628	-0.013347	-7.138E-06	3.5459	0.0018964	3.5326	0.0018892	535.303969573832	77.482	0.17161	77.22	77.141	77.313	-0.26202					5	3	2	0	0	0	0.03519	1	9208	9208		19.104	9.3979	1	83404	+		8993	24387	5966	5981	10570	10570					0.05518592411908685
DVEQRIKK	8	Unmodified	_DVEQRIKK_					0	0	0			REV__nc|ENSG00000171551|O95672-2|ECEL1	REV__nc|ENSG00000171551|O95672-2|ECEL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2984313964844	2	508.298373	1014.58219	-0.43638	-0.00022181	-0.47161	-0.00023972	-0.90799	-0.00046153	508.2977211582459	26.738	0.93801	26.57	26.119	27.057	-0.16816					38	22	3	0	0	0	0.87148	1	1423	1423		53.351	8.8204	1	765830	+		8994	26580	5967	5982	10571	10571					0.07548547708859132
DVEQWFQAQ	9	Unmodified	_DVEQWFQAQ_					0	0	0		ENSG00000108417|ENST00000225550|KRT37;ENSG00000171360|ENST00000246646|KRT38;CON__O76015;CON__O76014	ENSG00000108417|ENST00000225550|KRT37	ENSG00000108417|ENST00000225550|KRT37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.7738037109375	2	575.76182	1149.50909	-0.25973	-0.00014954	2.3374	0.0013458	2.0777	0.0011963	575.7629413579243	49.219	0.46097	49.037	48.883	49.344	-0.18206					14	11	2	0	0	0	0.024541	1	4921	4921		6.7355	0	1	102420		+	8995	496	5968	5983	10572	10572					-0.05968625804439398
DVEREAQLVE	10	Unmodified	_DVEREAQLVE_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	595.2598266601562	2	594.298767	1186.58298	-1.196	-0.00071078	4.2382	0.0025188	3.0422	0.001808	594.3012074416001	75.992	0.63605	75.747	75.547	76.183	-0.24455					43	16	4	0	0	0	0.03519	1	9383	9383		75.043	18.322	1	1415500			8996	5096	5969	5984	10573	10573					-0.002847024327820691
DVEREAQLVE	10	Unmodified	_DVEREAQLVE_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	594.298767	1186.58298	-1.0273	-0.00061052	4.6968	0.0027913	3.6695	0.0021808	594.301584090951	75.996	0.42227	75.724	75.502	75.924	-0.27266	-0.043072	0.00067694	NaN	75.043	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	724510			8997	5096	5969	5984							-0.002847024327820691
DVEREAQLVE	10	Unmodified	_DVEREAQLVE_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	594.298767	1186.58298	-0.81166	-0.00048237	3.7381	0.0022216	2.9265	0.0017392	594.3011703730365	76.008	0.46021	75.749	75.477	75.937	-0.25866	-0.017834	-0.00046249	NaN	75.043	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361660			8998	5096	5969	5984							-0.002847024327820691
DVEREAQLVE	10	Unmodified	_DVEREAQLVE_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	594.298767	1186.58298	-0.32617	-0.00019384	3.2677	0.001942	2.9415	0.0017481	594.3008438404124	75.892	0.45708	75.717	75.389	75.846	-0.17548	-0.049752	-0.0010217	NaN	75.043	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466800			8999	5096	5969	5984							-0.002847024327820691
DVERKEWMQ	9	Unmodified	_DVERKEWMQ_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.75311279296875	3	407.529129	1219.56556	-0.21404	-8.7229E-05	3.2153	0.0013103	3.0012	0.0012231	407.53033703893954	45.114	0.81812	44.966	44.697	45.515	-0.1488					52	23	3	0	0	0	0.024541	1	4373	4373		18.262	7.1653	1	1424100			9000	9566	5970	5985	10574	10574					-0.035443212394284274
DVEVEDVL	8	Unmodified	_DVEVEDVL_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.26629638671875	2	459.226748	916.438943	-0.64337	-0.00029545	-1.9692	-0.0009043	-2.6125	-0.0011998	459.22576455732894	28.495	1.871	28.326	28.048	29.919	-0.16897					57	43	2	0	0	0	0.027866	1	1672	1672		33.516	0	1	117330			9001	4506	5971	5986	10575	10575					-0.022619241928964584
DVEVFTKHI	9	Unmodified	_DVEVFTKHI_					0	0	0			REV__nc|ENSG00000166634|Q96P63|SERPINB12	REV__nc|ENSG00000166634|Q96P63|SERPINB12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.34716796875	2	544.292756	1086.57096	0.2591	0.00014103	3.2293	0.0017577	3.4884	0.0018987	544.2943978490495	78.237	0.85453	78.006	77.709	78.563	-0.23141					42	19	3	0	0	0	0.024292	1	9393	9393		58.782	19.529	1	375050	+		9002	26039	5972	5987	10576	10576					0.031137256147076187
DVEVFTKHI	9	Unmodified	_DVEVFTKHI_					0	0	0			REV__nc|ENSG00000166634|Q96P63|SERPINB12	REV__nc|ENSG00000166634|Q96P63|SERPINB12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	544.292756	1086.57096	-0.69804	-0.00037994	7.5103	0.0040878	6.8122	0.0037078	544.2963509864954	78.034	0.12263	78.034	77.959	78.082	0	0.026732	0.0039305	NaN	49.442	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32598	+		9003	26039	5972	5987							0.031137256147076187
DVEVVGHSI	9	Unmodified	_DVEVVGHSI_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26397705078125	2	477.748182	953.481811	0.20816	9.945E-05	-2.4823	-0.0011859	-2.2741	-0.0010865	477.7475572486107	38.911	0.79156	38.911	38.356	39.148	0					31	20	2	0	0	0	0.024436	1	3274	3274		30.504	8.5438	1	165340	+		9004	21509	5973	5988	10577	10577					0.0032089065520040094
DVFDPVTK	8	Unmodified	_DVFDPVTK_					0	0	0		ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000494880.5_1_1:185268818-185270317:-|nuORF	ENST00000494880.5_1_1:185268818-185270317:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.2740173339844	2	460.739825	919.465098	0.07274	3.3514E-05	-0.3959	-0.00018241	-0.32316	-0.00014889	460.74080355458455	48.553	0.20957	48.62	48.519	48.729	0.066795					8	5	2	0	0	0	0.027866	1	4889	4889		37.159	15.199	1	39268			9005	3564	5974	5989	10578	10578					0.002143897692349128
DVFEKTILE	9	Unmodified	_DVFEKTILE_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.313720703125	2	547.292422	1092.57029	-0.58041	-0.00031766	3.7446	0.0020494	3.1642	0.0017317	547.797183139871	45.408	0.20193	45.309	45.154	45.356	-0.099449					6	5	2	0	0	0	0.024288	1	4298	4298		62.107	16.135	1	106380			9006	19003;8399	5975	5990	10579	10579					0.0277088617501704
DVFEKTILE	9	Unmodified	_DVFEKTILE_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	547.292422	1092.57029	-0.30305	-0.00016586	10.457	0.0057232	10.154	0.0055574	547.2979637778182	45.305	0.43621	45.053	44.786	45.223	-0.25252	-0.19699	0.0040271	NaN	62.107	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189650			9007	19003;8399	5975	5990							0.0277088617501704
DVFKKYIN	8	Unmodified	_DVFKKYIN_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7880249023438	2	513.784567	1025.55458	0.42292	0.00021729	0.18858	9.689E-05	0.61151	0.00031418	513.7841713404663	71.606	0.52309	71.4	71.094	71.618	-0.20613					19	12	2	0	0	0	0.027866	1	8320	8320		37.159	0	1	354000			9008	8409	5976	5991	10580	10580					0.0428264444863089
DVFKMLGET	9	Unmodified	_DVFKMLGET_					0	0	0			REV__ENSG00000062485|ENST00000351328|CS	REV__ENSG00000062485|ENST00000351328|CS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2618408203125	2	520.260068	1038.50558	-0.45962	-0.00023912	3.6073	0.0018767	3.1477	0.0016376	520.2618713208313	22.784	0.96893	22.709	22.363	23.332	-0.075296					77	21	6	0	0	0	0.30449	1	829	829		75.043	0.78827	1	5969800	+		9009	20264	5977	5992	10581	10581					-0.012130119026551256
DVFKRNSGMM	10	Unmodified	_DVFKRNSGMM_					0	0	0			REV__nc|ENSG00000048028|Q96RU2-2|USP28	REV__nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	592.2544555664062	2	592.781176	1183.5478	-0.35923	-0.00021294	0.8634	0.00051181	0.50417	0.00029886	592.7815079601802	53.145	0.68406	53.018	52.753	53.437	-0.12706					39	17	3	0	0	0	0.03519	1	5516	5516		24.519	3.5723	1	931050	+		9010	20135	5978	5993	10582	10582					-0.0366335976591472
DVFLLPFY	8	Unmodified	_DVFLLPFY_					0	0	0		ENST00000480638.1_1_7:134649999-134653093:+|nuORF	ENST00000480638.1_1_7:134649999-134653093:+|nuORF	ENST00000480638.1_1_7:134649999-134653093:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7036437988281	2	507.270761	1012.52697	0.25924	0.00013151	0.92619	0.00046983	1.1854	0.00060134	507.271222834461	32.653	0.75225	32.46	31.986	32.738	-0.19261					23	17	2	0	0	0	0.027866	1	2293	2293		31.955	2.1133	1	154400			9011	15206	5979	5994	10583	10583					0.02120741188377906
DVFMEYNLI	9	Unmodified	_DVFMEYNLI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;ENST00000466513.1_1_17:57742174-57744343:+|nuORF	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.297119140625	2	572.273175	1142.5318	-1.9381	-0.0011091	-1.0044	-0.00057479	-2.9425	-0.0016839	572.2732047183368	64.942	0.29203	64.942	64.763	65.055	0					13	7	2	0	0	0	0.024427	1	7655	7655		42.396	3.1433	1	44120			9012	456	5980	5995	10584	10584					-0.03376742731165905
DVFPEPDLTDN	11	Unmodified	_DVFPEPDLTDN_					0	0	0			REV__ENSG00000005339|ENST00000262367|CREBBP	REV__ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.5294189453125	3	421.190947	1260.55101	3.3624	0.0014162	3.1859	0.0013419	6.5483	0.0027581	421.19186401400077	18.512	0.25035	18.27	18.074	18.324	-0.24256					6	4	2	0	0	0	0.024742	1	276	276		20.315	0	1	9563.2	+		9013	19803	5981	5996	10585	10585					-0.06884114906551986
DVFPHKNSV	9	Unmodified	_DVFPHKNSV_					0	0	0			REV__ENSG00000155792|ENST00000286234|DEPTOR	REV__ENSG00000155792|ENST00000286234|DEPTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7697143554688	2	521.769448	1041.52434	0.17162	8.9544E-05	-0.73042	-0.00038111	-0.5588	-0.00029156	521.768922838575	55.615	0.75095	55.615	55.284	56.035	0					59	20	4	0	0	0	0.56934	2	6146	6146;6170		54.776	1.744	1	8505200	+		9014	25028	5982	5997	10586;10587	10586					0.005242857834218739
DVFPHKNSV	9	Unmodified	_DVFPHKNSV_					0	0	0			REV__ENSG00000155792|ENST00000286234|DEPTOR	REV__ENSG00000155792|ENST00000286234|DEPTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7694702148438	2	521.769448	1041.52434	-0.24939	-0.00013012	-0.53303	-0.00027812	-0.78241	-0.00040824	521.7690494448261	55.669	1.0713	55.513	54.923	55.995	-0.15601					66	29	4	0	0	0	0.42604	2	6127	6127;6140		64.207	10.856	1	8170400	+		9015	25028	5982	5997	10588;10589	10588					0.005242857834218739
DVFPHKNSV	9	Unmodified	_DVFPHKNSV_					0	0	0			REV__ENSG00000155792|ENST00000286234|DEPTOR	REV__ENSG00000155792|ENST00000286234|DEPTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7688598632812	2	521.769448	1041.52434	-1.1166	-0.00058261	0.43627	0.00022763	-0.68033	-0.00035498	521.7695543372945	55.414	0.783	55.512	55.148	55.931	0.098015					51	20	4	0	0	0	0.45795	2	6053	6040;6053		62.107	7.3851	1	9137700	+		9016	25028	5982	5997	10590;10591	10591					0.005242857834218739
DVFRVAISQ	9	Unmodified	_DVFRVAISQ_					0	0	0		nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENST00000506225.1_1_4:184187042-184190959:+|nuORF	nc|ENSG00000151718|Q6AWC2-3|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.825927734375	2	517.785099	1033.55564	-0.94301	-0.00048828	0.42304	0.00021904	-0.51997	-0.00026923	517.7853081572468	56.315	0.57951	56.413	56.173	56.752	0.097893					41	15	4	0	0	0	0.024447	1	6241	6241		25.574	0	1	599180			9017	6225	5983	5998	10592	10592					0.04020858817534645
DVFSHFLY	8	Unmodified	_DVFSHFLY_					0	0	0		nc|ENSG00000124224|Q9P1A2|PPP4R1L;ENST00000244070.7_1_20:56821016-56884481:-|nuORF;nc|ENSG00000124224|Q9P1A2-3|PPP4R1L;ENST00000493688.5_1_20:56821016-56847830:-|nuORF	nc|ENSG00000124224|Q9P1A2|PPP4R1L	nc|ENSG00000124224|Q9P1A2|PPP4R1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.8027954101562	2	514.247818	1026.48108	0.57834	0.00029741	4.261	0.0021912	4.8394	0.0024886	514.2503225862064	59.721	0.45639	59.544	59.321	59.777	-0.1761					19	11	2	0	0	0	0.027866	1	6634	6634		35.201	1.6851	1	367560			9018	11300	5984	5999	10593	10593					-0.031099039938453643
DVFSLAIIM	9	Oxidation (M)	_DVFSLAIIM(Oxidation (M))_		DVFSLAIIM(1)		DVFSLAIIM(68)	0	0	1		ENSG00000132518|ENST00000254854|GUCY2D;GUCY2D|p.A726V|1|0.15|ENSG00000132518|chr17:8013166-8013166|C/T|missense_variant	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MSMS	OPSCC_40_ClassI_Rep-2	5	512.7713012695312	2	512.772811	1023.53107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.856	1	19.656	19.156	20.156	-0.2001								0	0	0	0.2977	1	467	467		68.485	10.673	1				9019	4616	5985	6000	10594	10594		182			0.020244626197836624
DVFTDYSFKHR	11	Unmodified	_DVFTDYSFKHR_					0	0	0			REV__nc|ENSG00000158717|Q96A37-2|RNF166	REV__nc|ENSG00000158717|Q96A37-2|RNF166	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7480773925781	3	472.229848	1413.66771	-0.6801	-0.00032116	0.18816	8.8855E-05	-0.49194	-0.00023231	472.22991115715763	45.443	0.22726	45.232	45.089	45.316	-0.21109					9	6	2	0	0	0	0.024734	1	4303	4303		34.087	16.92	1	131000	+		9020	25217	5986	6001	10595	10595					-0.02257331896157666
DVFVSSVAET	10	Unmodified	_DVFVSSVAET_					0	0	0		ENSG00000161860|ENST00000293695|SYCE2	ENSG00000161860|ENST00000293695|SYCE2	ENSG00000161860|ENST00000293695|SYCE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.80810546875	2	527.258579	1052.50261	-0.071897	-3.7908E-05	-1.1685	-0.00061608	-1.2404	-0.00065399	527.2585809699734	56.996	0.33226	57.092	56.911	57.243	0.09531					15	8	3	0	0	0	0.03519	1	6335	6335		58.782	16.386	1	212920			9021	6897	5987	6002	10596	10596					-0.021545637557892405
DVFYGTVPT	9	Unmodified	_DVFYGTVPT_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.9018859863281	2	499.745108	997.475663	-0.81054	-0.00040506	-4.2481	-0.002123	-5.0587	-0.002528	499.7430026283952	43.832	0.50819	43.832	43.548	44.056	0					27	13	3	0	0	0	0.024323	1	4099	4099		53.351	12.573	1	708810	+		9022	21246	5988	6003	10597	10597					-0.023176275763148624
DVFYPIGDVT	10	Unmodified	_DVFYPIGDVT_					0	0	0			REV__ENST00000483727.5_1_20:33033173-33065666:+|nuORF	REV__ENST00000483727.5_1_20:33033173-33065666:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.3433837890625	2	563.276772	1124.53899	-0.24736	-0.00013933	-0.031599	-1.7799E-05	-0.27896	-0.00015713	563.276440982482	89.391	0.63084	89.263	88.955	89.586	-0.12774					22	14	2	0	0	0	0.03519	1	10938	10938		19.997	4.355	1	120690	+		9023	20619	5989	6004	10598	10598					-0.01829686859082358
DVGHNIYIL	9	Unmodified	_DVGHNIYIL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2899169921875	2	522.279649	1042.54475	-0.85067	-0.00044429	-3.5642	-0.0018615	-4.4149	-0.0023058	522.7799082199574	57.055	0.10503	57.055	56.968	57.073	0					4	2	2	0	0	0	0.024412	1	6399	6399		31.955	8.9124	1	90929			9024	3956	5990	6005	10599	10599					0.025174564432290936
DVGKLREA	8	Unmodified	_DVGKLREA_					0	0	0			REV__nc|ENSG00000211720|A0A0K0K1C0|TRBV11-1	REV__nc|ENSG00000211720|A0A0K0K1C0|TRBV11-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.27081298828125	2	444.250892	886.48723	-0.23245	-0.00010327	0.75625	0.00033596	0.52379	0.00023269	444.25116175971465	38.691	0.56214	38.592	38.318	38.88	-0.098755					23	14	2	0	0	0	0.027866	1	3232	3232		37.159	0	1	244340	+		9025	37101	5991	6006	10600	10600					0.039446142376732496
DVGKRKVE	8	Unmodified	_DVGKRKVE_					0	0	0		nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000609175.1_1_13:53261778-53261967:+|nuORF	nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7538146972656	2	465.771991	929.529429	-0.062175	-2.8959E-05	-0.99566	-0.00046375	-1.0578	-0.00049271	465.7715030483524	37.423	0.32717	37.423	37.305	37.632	0					12	8	2	0	0	0	0.027866	1	3075	3075		37.159	2.9866	1	157800			9026	18465	5992	6007	10601	10601					0.06184589646045424
DVGLKVRD	8	Unmodified	_DVGLKVRD_					0	0	0			REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.26910400390625	2	451.258717	900.50288	-0.74921	-0.00033809	-0.46681	-0.00021065	-1.216	-0.00054874	451.2586807688392	44.096	0.28449	44.096	43.836	44.12	0					9	7	2	0	0	0	0.027866	1	4142	4142		57.811	9.8957	1	98023	+		9027	26175	5993	6008	10602	10602					0.04864900754705559
DVGRAEVSVQ	10	Unmodified	_DVGRAEVSVQ_					0	0	0		ENST00000530298.5_1_1:156807654-156845592:+|nuORF;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1	ENST00000530298.5_1_1:156807654-156845592:+|nuORF	ENST00000530298.5_1_1:156807654-156845592:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3035278320312	2	530.275095	1058.53564	-0.41181	-0.00021837	1.1449	0.00060713	0.73313	0.00038876	530.2749078874544	30.956	0.74202	31.029	30.749	31.491	0.073515					48	17	4	0	0	0	0.03519	1	2029	2029		19.997	0	1	564330			9028	10132	5994	6009	10603	10603					0.008710630869245506
DVGVPDIKR	9	Unmodified	_DVGVPDIKR_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.9018249511719	2	499.785099	997.555644	-0.97287	-0.00048623	0.52799	0.00026388	-0.44488	-0.00022234	499.7852354896591	43.864	0.64066	43.72	43.425	44.065	-0.14471					63	17	5	0	0	0	0.024381	1	4173	4173		37.159	10.466	1	2444700	+		9029	23887	5995	6010	10604	10604					0.05676858817525954
DVHARYIEL	9	Unmodified	_DVHARYIEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2959594726562	2	558.29583	1114.57711	0.085134	4.753E-05	-0.049858	-2.7836E-05	0.035276	1.9694E-05	558.2956923930558	50.58	1.2808	50.468	50.121	51.401	-0.11163					74	33	4	0	0	0	0.094442	4	5147	5136;5147;5159;5173		112.41	32.698	1	7450500			9030	2053	5996	6011	10605;10606;10607;10608	10606					0.02440243846217527
DVHARYIEL	9	Unmodified	_DVHARYIEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2958374023438	2	558.29583	1114.57711	0.24209	0.00013516	-0.086373	-4.8221E-05	0.15572	8.6936E-05	558.2956561134722	50.817	1.0914	50.541	50.262	51.353	-0.27643					70	28	4	0	0	0	0.10464	4	5171	5160;5171;5183;5196		109.48	34.823	1	7083800			9031	2053	5996	6011	10609;10610;10611;10612	10610					0.02440243846217527
DVHARYIEL	9	Unmodified	_DVHARYIEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.295654296875	2	558.29583	1114.57711	0.11919	6.6545E-05	-0.042158	-2.3537E-05	0.077036	4.3009E-05	558.2957126657441	50.689	1.2436	50.508	50.172	51.415	-0.18071					68	32	4	0	0	0	0.062622	4	5151	5143;5151;5163;5176		124.08	33.71	1	7732800			9032	2053	5996	6011	10613;10614;10615;10616	10614					0.02440243846217527
DVHIYRLI	8	Unmodified	_DVHIYRLI_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.31689453125	2	514.798009	1027.58147	-0.24219	-0.00012468	2.7052	0.0013926	2.463	0.001268	514.7996220375223	32.879	0.70276	32.648	32.092	32.794	-0.23107					18	16	2	0	0	0	0.027866	1	2276	2276		33.516	11.556	1	126820			9033	1690;37967	5997	6012	10617	10617					0.06877753059802671
DVHKKYNAL	9	Unmodified	_DVHKKYNAL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.2982788085938	2	544.298373	1086.58219	-0.28984	-0.00015776	-0.12104	-6.5882E-05	-0.41088	-0.00022364	544.2982000784933	24.232	0.99038	24.016	23.644	24.635	-0.2151					82	22	5	0	0	0	0.091713	3	1043	1032;1043;1058		113.41	46.982	1	2279400			9034	1185	5998	6013	10618;10619;10620	10619					0.042365477088424086
DVHKKYNAL	9	Unmodified	_DVHKKYNAL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.298095703125	2	544.298373	1086.58219	-0.34242	-0.00018638	0.17212	9.3683E-05	-0.1703	-9.2695E-05	544.2984075667002	24.064	0.90006	23.884	23.563	24.463	-0.17989					72	20	5	0	0	0	0.16468	2	1001	1001;1013		96.19	24.895	1	2154800			9035	1185	5998	6013	10621;10622	10621					0.042365477088424086
DVHKKYNAL	9	Unmodified	_DVHKKYNAL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.2982177734375	2	544.298373	1086.58219	1.384	0.00075329	-1.6262	-0.00088514	-0.24223	-0.00013185	544.2974238569885	24.093	1.0078	23.912	23.539	24.547	-0.18089					76	22	5	0	0	0	0.14024	2	995	984;995		101.6	42.819	1	2471200			9036	1185	5998	6013	10623;10624	10624					0.042365477088424086
DVHLRLRPS	9	Unmodified	_DVHLRLRPS_					0	0	0		ENST00000303052.12_2_15:64592864-64648248:-|nuORF	ENST00000303052.12_2_15:64592864-64648248:-|nuORF	ENST00000303052.12_2_15:64592864-64648248:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2974243164062	2	546.817264	1091.61998	-0.62181	-0.00034002	2.3337	0.0012761	1.7119	0.00093611	546.819132450767	55.38	0.33448	55.164	54.967	55.301	-0.21551					14	9	2	0	0	0	0.024506	1	5934	5934		16.473	0	1	120830			9037	11967	5999	6014	10625	10625					0.0778305869430369
DVHNRVRMV	9	Unmodified	_DVHNRVRMV_					0	0	0		ENSG00000162771|ENST00000294829|GARIN4;ENSG00000170613|ENST00000302938|GARIN3	ENSG00000162771|ENST00000294829|GARIN4;ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.276611328125	2	563.300924	1124.5873	-0.68957	-0.00038844	-0.76312	-0.00042987	-1.4527	-0.0008183	563.3001085193217	82.226	0.50162	82.252	81.899	82.401	0.025711					18	11	2	0	0	0	0.023635	1	10184	10184		76.774	0	1	112840			9038	8060;6989	6000	6015	10626	10626					0.02998528299804093
DVHSRSKQ	8	Unmodified	_DVHSRSKQ_					0	0	0			REV__ENST00000325327.3_1_19:2429314-2429548:-|nuORF	REV__ENST00000325327.3_1_19:2429314-2429548:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7510681152344	2	478.749047	955.483542	2.1199	0.0010149	1.2311	0.00058937	3.3509	0.0016043	478.7493100544196	24.092	0.70274	23.911	23.582	24.285	-0.18089					38	15	4	0	0	0	0.71063	1	991	991		66.429	16.405	1	552680	+		9039	30387	6001	6016	10627	10627					0.004019444638174718
DVIAAYQI	8	Unmodified	_DVIAAYQI_					0	0	0		ENST00000521792.2_1_8:43126156-43127029:-|nuORF	ENST00000521792.2_1_8:43126156-43127029:-|nuORF	ENST00000521792.2_1_8:43126156-43127029:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.7425231933594	2	446.742368	891.470183	-0.29686	-0.00013262	0.51881	0.00023177	0.22195	9.9154E-05	446.7424988443532	81.687	1.143	81.687	81.178	82.321	0					66	27	3	0	0	0	0.78609	1	10206	10206		60.294	4.7898	1	1894300			9040	16012	6002	6017	10628	10628					0.02010693631848426
DVIEINPVTGV	11	Unmodified	_DVIEINPVTGV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.2725830078125	2	578.316428	1154.6183	-0.68742	-0.00039755	3.8129	0.0022051	3.1255	0.0018075	578.3186882423305	69.516	0.54015	69.249	68.953	69.493	-0.26725					29	12	3	0	0	0	0.024787	1	8076	8076		58.23	22.612	1	155060			9041	1818;17643	6003	6018	10629	10629					0.04717960095013041
DVIEINPVTGV	11	Unmodified	_DVIEINPVTGV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	578.316428	1154.6183	-0.57627	-0.00033326	3.6961	0.0021375	3.1199	0.0018043	578.3183683356249	69.418	0.62147	69.196	68.768	69.39	-0.22245	-0.026438	-5.8332E-05	NaN	58.23	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79176			9042	1818;17643	6003	6018							0.04717960095013041
DVIENVIEN	9	Unmodified	_DVIENVIEN_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3106689453125	2	522.764029	1043.5135	-0.4777	-0.00024973	0.28009	0.00014642	-0.19761	-0.00010331	522.7640469962814	32.009	0.93581	32.072	31.68	32.616	0.062885					56	23	4	0	0	0	0.022657	1	2142	2142		110.12	16.924	1	1049800			9043	8529	6004	6019	10630	10630					-0.006511613815291639
DVIHAVEII	9	Unmodified	_DVIHAVEII_					0	0	0		OR6K2|p.A211T|1|0.3|ENSG00000196171|chr1:158700022-158700022|C/T|missense_variant;ENSG00000196171|ENST00000359610|OR6K2	OR6K2|p.A211T|1|0.3|ENSG00000196171|chr1:158700022-158700022|C/T|missense_variant	OR6K2|p.A211T|1|0.3|ENSG00000196171|chr1:158700022-158700022|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7705993652344	2	504.78985	1007.56515	-0.52253	-0.00026377	-0.50426	-0.00025454	-1.0268	-0.00051831	504.78963009417646	42.363	0.94749	42.131	41.583	42.53	-0.23186					46	25	4	0	0	0	0.024477	1	3858	3858		20.947	3.582	1	1367900			9044	9829	6005	6020	10631	10631					0.06166627103038991
DVIILIKSD	9	Unmodified	_DVIILIKSD_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3160400390625	2	508.305332	1014.59611	0.25395	0.00012908	-0.0059535	-3.0262E-06	0.24799	0.00012606	508.3052294349051	68.402	0.71535	68.421	68.118	68.833	0.018921					26	18	2	0	0	0	0.024477	1	8174	8174		20.947	0	1	431620			9045	1881	6006	6021	10632	10632					0.08939780417279053
DVIKHLAQT	9	Unmodified	_DVIKHLAQT_					0	0	0			REV__ENSG00000184162|ENST00000331552|NR2C2AP	REV__ENSG00000184162|ENST00000331552|NR2C2AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.253173828125	2	512.792924	1023.57129	-0.22507	-0.00011541	-0.84893	-0.00043533	-1.074	-0.00055074	512.7923039692281	57.24	0.81013	57.015	56.7	57.51	-0.2248					61	21	4	0	0	0	0.024389	1	6221	6221		35.152	0	1	744500	+		9046	27640	6007	6022	10633	10633					0.0604514533456495
DVILGTRKT	9	Unmodified	_DVILGTRKT_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2746887207031	2	501.800749	1001.58694	-0.63979	-0.00032105	0.084198	4.2251E-05	-0.55559	-0.0002788	501.8009600294112	48.531	0.61859	48.378	47.957	48.575	-0.15276					27	17	2	0	0	0	0.024495	1	4958	4958		34.173	11.13	1	121110			9047	18235	6008	6023	10634	10634					0.08621431851599937
DVILPPVPES	10	Unmodified	_DVILPPVPES_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.25927734375	2	533.294965	1064.57538	-0.43691	-0.000233	0.16106	8.5891E-05	-0.27586	-0.00014711	533.2948811784491	66.557	0.38251	66.309	66.021	66.404	-0.24839					20	9	3	0	0	0	0.03519	1	7627	7627		58.782	5.4305	1	263700	+		9048	22489	6009	6024	10635	10635					0.04567190037619184
DVILVAVDGT	10	Unmodified	_DVILVAVDGT_					0	0	0			REV__FLNC|p.V413L|1|0.68|ENSG00000128591|chr7:128838629-128838629|G/C|missense_variant	REV__FLNC|p.V413L|1|0.68|ENSG00000128591|chr7:128838629-128838629|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2900695800781	2	501.279315	1000.54408	0.73657	0.00036923	-3.0332	-0.0015205	-2.2966	-0.0011512	501.27734061547847	85.011	0.12007	84.852	84.778	84.898	-0.15869					4	2	2	0	0	0	0.03519	1	10294	10294		34.173	3.6689	1	140480	+		9049	36045	6010	6025	10636	10636					0.04382617003534506
DVIMHALTK	9	Unmodified	_DVIMHALTK_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;ENST00000556300.6_1_14:74417008-74425067:+|nuORF;ENST00000555196.5_1_14:74417278-74423148:+|nuORF;ENST00000555552.5_1_14:74417035-74423148:+|nuORF;ENST00000554193.5_1_14:74417035-74422669:+|nuORF	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3032836914062	2	514.283877	1026.5532	-0.96233	-0.00049491	1.8629	0.00095804	0.90053	0.00046313	514.7847960786626	37.809	0.82413	37.589	37.076	37.9	-0.2195					33	21	2	0	0	0	0.024209	1	2987	2987		47.657	8.4045	1	150680			9050	3762	6011	6026	10637	10637					0.040986870881852155
DVINAILKQH	10	Unmodified	_DVINAILKQH_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8142700195312	2	575.83258	1149.65061	-0.074561	-4.2935E-05	0.57409	0.00033058	0.49953	0.00028764	575.8327607694202	47.747	0.27995	47.56	47.355	47.635	-0.18684					12	7	2	0	0	0	0.03519	1	4655	4655		52.937	11.51	1	102680			9051	8462	6012	6027	10638	10638					0.08176792288736578
DVITLTRD	8	Unmodified	_DVITLTRD_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.7776184082031	2	466.756007	931.497461	0.35087	0.00016377	3.4099	0.0015916	3.7608	0.0017554	466.757811506923	81.152	0.53127	80.959	80.64	81.171	-0.19334					20	12	2	0	0	0	0.027866	1	9748	9748		29.15	10.046	1	97955	+		9052	20665	6013	6028	10639	10639					0.02897177172235388
DVIVASWEL	9	Unmodified	_DVIVASWEL_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2;REV__ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2714233398438	2	516.274032	1030.53351	-0.080851	-4.1741E-05	-4.3354	-0.0022382	-4.4162	-0.00228	516.2717183881178	49.149	0.90163	48.967	48.667	49.569	-0.18206					52	23	4	0	0	0	0.40179	1	4932	4932		65.803	9.3694	1	3489800	+		9053	27450;36012	6014	6029	10640	10640					0.01946634349087617
DVKETGACII	10	Unmodified	_DVKETGACII_					0	0	0			REV__ENSG00000140006|ENST00000620954|WDR89	REV__ENSG00000140006|ENST00000620954|WDR89	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3074340820312	2	524.7708	1047.52705	0.24426	0.00012818	-1.8719	-0.00098233	-1.6277	-0.00085415	524.7694929431514	75.447	0.50974	75.271	75.113	75.622	-0.17548					22	12	2	0	0	0	0.03519	1	8943	8943		51.335	10.557	1	247950	+		9054	23982	6015	6030	10641	10641					0.005183731260558488
DVKEVPLEV	9	Unmodified	_DVKEVPLEV_					0	0	0			REV__ENST00000525616.1_1_19:50180537-50188241:+|nuORF;REV__nc|ENSG00000126457|Q99873-5|PRMT1	REV__nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8158569335938	2	514.28714	1026.55973	-1.7753	-0.00091303	-4.157	-0.0021379	-5.9323	-0.0030509	514.2845193758446	59.951	0.38197	60.03	59.974	60.356	0.078888					15	9	2	0	0	0	0.024367	1	6806	6806		52.937	5.2794	1	103170	+		9055	34418;22895	6016	6031	10642	10642					0.04750903520562133
DVKFYLAEL	9	Unmodified	_DVKFYLAEL_					0	0	0		nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;RPS6KA3|p.E167D|1|0.07|ENSG00000177189|chrX:20193579-20193579|T/A|missense_variant;ENST00000474934.1_1_1:26877949-26879989:+|nuORF;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENSG00000177189|ENST00000379565|RPS6KA3;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant;ENSG00000071242|ENST00000265678|RPS6KA2	nc|ENSG00000072133|Q9UK32-2|RPS6KA6;nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000071242|ENST00000265678|RPS6KA2	nc|ENSG00000117676|Q15418-3|RPS6KA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.2949829101562	2	549.297507	1096.58046	-1.4867	-0.00081664	-0.52326	-0.00028743	-2.01	-0.0011041	549.2971375372593	62.245	0.93702	62.308	62.087	63.024	0.062767					51	23	3	0	0	0	0.42604	1	7185	7185		64.207	2.0999	1	2812500			9056	3652;1467;1448	6017	6032	10643	10643					0.03603493900232024
DVKGRIYQL	9	Unmodified	_DVKGRIYQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.314208984375	2	546.314023	1090.61349	-0.51669	-0.00028227	-1.2868	-0.000703	-1.8035	-0.00098528	546.3138348140509	45.462	1.1673	45.362	44.868	46.036	-0.099445					119	32	6	0	0	0	0.10174	1	4332	4332		110.12	14.305	1	15784000			9057	872	6018	6033	10644	10644					0.07181120742939129
DVKGRIYQL	9	Unmodified	_DVKGRIYQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.3134155273438	2	546.314023	1090.61349	-0.24517	-0.00013394	-1.2312	-0.00067262	-1.4764	-0.00080656	546.3135849347806	45.64	1.197	45.388	45.124	46.321	-0.25252					107	32	6	0	0	0	0.15366	1	4330	4330		98.629	0	1	13593000			9058	872	6018	6033	10645	10645					0.07181120742939129
DVKGRIYQL	9	Unmodified	_DVKGRIYQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant;ENST00000536090.1_1_12:6626539-6627126:+|nuORF;ENST00000542472.1_1_12:6626979-6631036:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.3137817382812	2	546.314023	1090.61349	-1.0325	-0.00056405	-0.4929	-0.00026928	-1.5254	-0.00083332	546.3139995160525	45.578	0.88279	45.375	45.161	46.044	-0.20226					95	24	6	0	0	0	0.12914	2	4351	4326;4351		104.06	13.687	1	14376000			9059	872	6018	6033	10646;10647	10647					0.07181120742939129
DVKIKNVI	8	Unmodified	_DVKIKNVI_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;ENST00000586709.1_1_18:21478707-21479460:+|nuORF	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2198181152344	2	464.794935	927.575317	-0.4779	-0.00022212	1.076	0.00050011	0.59809	0.00027799	464.7952715729048	34.351	0.38989	34.351	34.09	34.479	0					13	9	2	0	0	0	0.027866	1	2529	2529		17.365	4.4058	1	538790			9060	1163	6019	6034	10648	10648					0.10863234828264012
DVKIKNVI	8	Unmodified	_DVKIKNVI_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant;ENST00000586709.1_1_18:21478707-21479460:+|nuORF	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.794935	927.575317	-0.026737	-1.2427E-05	1.4266	0.00066307	1.3999	0.00065065	464.795799037429	34.18	0.40467	34.23	33.925	34.329	0.050255	-0.02935	0.00037555	NaN	11.511	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460690			9061	1163	6019	6034							0.10863234828264012
DVKKKIKEV	9	Unmodified	_DVKKKIKEV_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;ENST00000482661.1_1_3:179094869-179095079:+|nuORF	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8473510742188	2	543.847699	1085.68084	-1.6833	-0.00091544	1.2891	0.00070106	-0.39421	-0.00021439	543.8483119492604	21.11	0.78633	20.897	20.624	21.41	-0.2128					38	15	4	0	0	0	0.43628	1	610	610		63.534	4.7519	1	724730			9062	8112	6020	6035	10649	10649					0.14143150953873374
DVKKKSQRPL	10	Unmodified	_DVKKKSQRPL_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.24737548828125	3	400.247062	1197.71936	0.6522	0.00026104	-0.67062	-0.00026841	-0.018423	-7.3737E-06	400.2467718042326	33.001	0.74602	33.001	32.642	33.388	0					61	19	5	0	0	0	0.83648	1	2342	2342		58.246	6.7185	1	3310800	+		9063	22204	6021	6036	10650	10650					0.12840456588423876
DVKKNQSLL	9	Unmodified	_DVKKNQSLL_					0	0	0		ENST00000371857.7_1_10:90751224-90770455:+|nuORF	ENST00000371857.7_1_10:90751224-90770455:+|nuORF	ENST00000371857.7_1_10:90751224-90770455:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7839965820312	2	522.806031	1043.59751	-0.021366	-1.117E-05	3.7044	0.0019367	3.683	0.0019255	522.8080351882345	68.398	0.89795	68.106	67.507	68.405	-0.29267					48	22	4	0	0	0	0.023093	1	8138	8138		82.75	15.257	1	786650			9064	13019	6022	6037	10651	10651					0.07745414506052839
DVKKRIKEA	9	Unmodified	_DVKKRIKEA_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8353881835938	2	543.835123	1085.65569	0.45755	0.00024883	-0.68814	-0.00037423	-0.23058	-0.0001254	543.834661039973	19.31	0.74352	19.11	18.811	19.554	-0.2001					39	14	4	0	0	0	0.51687	1	395	395		58.23	3.4536	1	595420			9065	4706	6023	6038	10652	10652					0.11629096151318663
DVKKRIKEA	9	Unmodified	_DVKKRIKEA_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8350219726562	2	543.835123	1085.65569	1.1679	0.00063517	-1.5362	-0.00083543	-0.36824	-0.00020026	543.8342148057066	19.284	0.69296	19.05	18.78	19.473	-0.23345					37	13	4	0	0	0	0.43628	1	372	372		63.534	1.4264	1	617520			9066	4706	6023	6038	10653	10653					0.11629096151318663
DVKNKVTAV	9	Unmodified	_DVKNKVTAV_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A;ENST00000510445.1_1_5:93120070-93217196:-|nuORF	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.28717041015625	2	487.287474	972.560395	-1.3859	-0.00067532	0.93647	0.00045633	-0.4494	-0.00021899	487.28787471345504	29.062	1.5421	28.817	28.448	29.99	-0.24524					74	35	4	0	0	0	0.086035	3	1751	1738;1751;1763		115.49	30.579	1	5821400			9067	3291	6024	6039	10654;10655;10656	10655					0.0730174296027144
DVKNKVTAV	9	Unmodified	_DVKNKVTAV_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A;ENST00000510445.1_1_5:93120070-93217196:-|nuORF	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2872619628906	2	487.287474	972.560395	-0.38675	-0.00018846	-0.10144	-4.9432E-05	-0.4882	-0.00023789	487.28742060475133	28.998	1.3239	28.825	28.464	29.788	-0.17229					52	30	3	0	0	0	0.053401	3	1732	1722;1732;1743		127.46	32.814	1	4981500			9068	3291	6024	6039	10657;10658;10659	10658					0.0730174296027144
DVKNKVTAV	9	Unmodified	_DVKNKVTAV_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A;ENST00000510445.1_1_5:93120070-93217196:-|nuORF	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2869873046875	2	487.287474	972.560395	-0.12677	-6.1776E-05	-0.48875	-0.00023816	-0.61552	-0.00029994	487.287194030474	28.996	1.1369	28.847	28.572	29.709	-0.14952					50	26	4	0	0	0	0.086035	3	1719	1708;1719;1731		115.49	29.766	1	5554000			9069	3291	6024	6039	10660;10661;10662	10661					0.0730174296027144
DVKPGRINM	9	Unmodified	_DVKPGRINM_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8001098632812	2	515.279126	1028.5437	-0.56848	-0.00029293	0.46993	0.00024214	-0.098554	-5.0783E-05	515.2792199360472	45.558	0.4653	45.356	45.098	45.563	-0.20226					21	13	2	0	0	0	0.02435	1	4319	4319		34.173	0	1	289880	+		9070	22797	6025	6040	10663	10663					0.03056918802690234
DVKQMLLKL	9	Unmodified	_DVKQMLLKL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3025512695312	2	544.330827	1086.6471	-1.1354	-0.00061804	-0.015652	-8.5199E-06	-1.1511	-0.00062656	544.3304910395005	65.201	0.69358	65.201	64.873	65.566	0					28	19	2	0	0	0	0.02435	1	7657	7657		60.972	2.19	1	532340			9071	8258	6026	6041	10664	10664					0.10724406190502123
DVKQMLLKL	9	Unmodified	_DVKQMLLKL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.330827	1086.6471	-1.234	-0.0006717	0.36583	0.00019913	-0.86816	-0.00047257	544.3308493323605	65.5	0.55103	65.227	65.017	65.568	-0.27283	0.0042728	0.00038691	NaN	71.296	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422250			9072	8258	6026	6041							0.10724406190502123
DVKQMLLKL	9	Unmodified	_DVKQMLLKL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.330827	1086.6471	-1.6044	-0.00087333	-2.3752	-0.0012929	-3.9796	-0.0021662	544.3285247599183	65.424	0.20308	65.211	65.052	65.255	-0.21328	-0.01171	-0.0025971	NaN	71.296	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66373			9073	8258	6026	6041							0.10724406190502123
DVKRKGII	8	Unmodified	_DVKRKGII_					0	0	0			REV__ENST00000556349.1_1_14:20617709-20617883:+|nuORF	REV__ENST00000556349.1_1_14:20617709-20617883:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.9007263183594	2	464.800552	927.58655	-0.32789	-0.0001524	0.27753	0.000129	-0.050361	-2.3408E-05	464.8005916830814	20.613	0.59316	20.39	20.02	20.613	-0.22344					17	11	2	0	0	0	0.027866	1	520	520		13.775	4.953	1	46196	+		9074	35032	6027	6042	10665	10665					0.11986056922432908
DVKRSRTYGLI	11	Unmodified	_DVKRSRTYGLI_					0	0	0			REV__ENSG00000175538|ENST00000310128|KCNE3	REV__ENSG00000175538|ENST00000310128|KCNE3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.2739562988281	3	436.585854	1306.73573	-0.35109	-0.00015328	3.4486	0.0015056	3.0975	0.0013523	436.92184018223577	42.525	0.33899	42.293	42.155	42.494	-0.23186					16	8	2	0	0	0	0.024723	1	3834	3834		42.338	21.501	1	117130	+		9075	26958	6028	6043	10666	10666					0.09463537754527351
DVKSKTEAL	9	Unmodified	_DVKSKTEAL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.7767333984375	2	495.776939	989.539325	-0.60423	-0.00029956	-0.13639	-6.7621E-05	-0.74062	-0.00036718	495.77687344209716	27.944	1.3308	27.699	26.951	28.281	-0.24524					97	31	6	0	0	0	0.18994	3	1614	1576;1588;1614		90.601	13.352	1	10356000			9076	4330	6029	6044	10667;10668;10669	10669					0.04413732860757591
DVKSKTEAL	9	Unmodified	_DVKSKTEAL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7767028808594	2	495.776939	989.539325	-0.78508	-0.00038922	0.073893	3.6634E-05	-0.71118	-0.00035259	495.7769557752513	27.755	1.7137	27.587	27.057	28.77	-0.16816					101	40	4	0	0	0	0.14181	4	1557	1534;1545;1557;1570		101.25	5.2143	1	10973000			9077	4330	6029	6044	10670;10671;10672;10673	10672					0.04413732860757591
DVKSKTEAL	9	Unmodified	_DVKSKTEAL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7766418457031	2	495.776939	989.539325	-0.35871	-0.00017784	-0.37455	-0.00018569	-0.73326	-0.00036353	495.77671733946215	27.822	1.1314	27.67	27.19	28.321	-0.15196					86	27	5	0	0	0	0.14181	4	1557	1523;1533;1557;1572		101.25	16.337	1	11861000			9078	4330	6029	6044	10674;10675;10676;10677	10676					0.04413732860757591
DVKSSWLI	8	Unmodified	_DVKSSWLI_					0	0	0			REV__ENST00000485040.5_1_1:151403272-151413406:-|nuORF	REV__ENST00000485040.5_1_1:151403272-151413406:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2608337402344	2	474.263468	946.512382	0.60956	0.00028909	3.1352	0.0014869	3.7448	0.001776	474.26473619121185	43.142	1.3133	43.173	42.533	43.847	0.030827					56	35	2	0	0	0	0.027866	1	3985	3985		24.203	2.2429	1	361640	+		9079	33553	6030	6045	10678	10678					0.03698669040238656
DVLAKLLPL	9	Unmodified	_DVLAKLLPL_					0	0	0		ENST00000429300.5_1_22:18905996-18910521:-|nuORF	ENST00000429300.5_1_22:18905996-18910521:-|nuORF	ENST00000429300.5_1_22:18905996-18910521:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2906494140625	2	491.320786	980.627018	-0.36066	-0.0001772	1.8951	0.00093108	1.5344	0.00075388	491.32177052385845	66.681	0.47183	66.399	66.326	66.798	-0.28149					23	15	2	0	0	0	0.024523	1	7928	7928		29.15	7.1897	1	1660900			9080	14140	6031	6046	10679	10679					0.13592978522194699
DVLCLTTIF	9	Unmodified	_DVLCLTTIF_					0	0	0		ENST00000468810.1_1_2:55461284-55461350:+|nuORF;ENST00000404735.1_1_2:55461284-55461991:+|nuORF	ENST00000468810.1_1_2:55461284-55461350:+|nuORF	ENST00000468810.1_1_2:55461284-55461350:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.77099609375	2	512.772811	1023.53107	0.81594	0.00041839	-3.4055	-0.0017462	-2.5895	-0.0013278	512.7708734959615	19.876	0.88161	19.643	19.374	20.256	-0.23345					34	17	4	0	0	0	0.55828	1	445	445		55.504	2.1528	1	407580			9081	13706	6032	6047	10680	10680					0.020244626197722937
DVLDFRLN	8	Unmodified	_DVLDFRLN_					0	0	0		SCFD1|p.H288R|1|0.33|ENSG00000092108|chr14:30670263-30670263|A/G|missense_variant	SCFD1|p.H288R|1|0.33|ENSG00000092108|chr14:30670263-30670263|A/G|missense_variant	SCFD1|p.H288R|1|0.33|ENSG00000092108|chr14:30670263-30670263|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.79132080078125	2	496.263999	990.513445	-0.75842	-0.00037638	3.939	0.0019548	3.1806	0.0015784	496.2659954123912	34.906	0.49733	34.884	34.551	35.049	-0.021763					23	12	2	0	0	0	0.027866	1	2589	2589		25.45	0	1	6576400			9082	37856	6033	6048	10681	10681					0.017808834091511017
DVLDMRLPE	9	Unmodified	_DVLDMRLPE_					0	0	0			REV__UBE2L6|p.A126V|1|0.18|ENSG00000156587|chr11:57552443-57552443|G/A|missense_variant	REV__UBE2L6|p.A126V|1|0.18|ENSG00000156587|chr11:57552443-57552443|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.2904052734375	2	544.276249	1086.53795	-0.57736	-0.00031424	-1.6394	-0.00089227	-2.2167	-0.0012065	544.2754479490994	53.96	0.13651	53.96	53.907	54.043	0					5	3	2	0	0	0	0.024511	1	5871	5871		25.574	9.1009	1	107760	+		9083	37750	6034	6049	10682	10682					-0.0018622449965732812
DVLEATVGILN	11	Unmodified	_DVLEATVGILN_					0	0	0			REV__ENSG00000135931|ENST00000611582|ARMC9	REV__ENSG00000135931|ENST00000611582|ARMC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.3197631835938	2	572.316428	1142.6183	0.68404	0.00039149	3.8591	0.0022086	4.5431	0.0026001	572.3186077391873	77.163	0.69685	76.911	76.614	77.31	-0.25163					28	17	2	0	0	0	0.95664	1	9177	9177		46.457	2.34	1	500460	+		9084	23601	6035	6050	10683	10683					0.05269960095074566
DVLERTPLD	9	Unmodified	_DVLERTPLD_					0	0	0		ENST00000553142.5_1_12:58021700-58025915:-|nuORF;nc|ENSG00000135454|Q00973-2|B4GALNT1;ENSG00000135454|ENST00000341156|B4GALNT1;ENST00000552468.1_1_12:58021700-58022177:-|nuORF	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2823486328125	2	529.279846	1056.54514	0.27724	0.00014674	3.3385	0.001767	3.6158	0.0019138	529.2815217334794	83.747	0.80861	83.609	83.255	84.063	-0.1386					45	18	4	0	0	0	0.54416	1	10114	10114		56.434	4.1346	1	884400			9085	4898	6036	6051	10684	10684					0.019128313724195323
DVLFGDVW	8	Unmodified	_DVLFGDVW_					0	0	0		ENST00000436137.2_1_11:124530361-124543691:-|nuORF;nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE	ENST00000436137.2_1_11:124530361-124543691:-|nuORF	ENST00000436137.2_1_11:124530361-124543691:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2488098144531	2	475.734543	949.454533	-0.09698	-4.6137E-05	3.1201	0.0014843	3.0231	0.0014382	475.73614713557106	51.689	0.93703	51.541	51.12	52.057	-0.14735					35	26	2	0	0	0	0.027866	1	5471	5471		47.916	5.4411	1	204530			9086	3011	6037	6052	10685	10685					-0.0222159288517787
DVLGLVASGT	10	Unmodified	_DVLGLVASGT_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2373046875	2	466.258382	930.502212	-0.34754	-0.00016205	0.90789	0.00042331	0.56034	0.00026126	466.2590902408848	28.348	0.25677	28.343	28.242	28.499	-0.0042019					8	5	2	0	0	0	0.03519	1	1628	1628		32.812	0	1	50650			9087	7732	6038	6053	10686	10686					0.03418061315016985
DVLIERIA	8	Unmodified	_DVLIERIA_					0	0	0			REV__ENSG00000168334|ENST00000340369|XIRP1	REV__ENSG00000168334|ENST00000340369|XIRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7745666503906	2	464.776742	927.538931	-0.081102	-3.7694E-05	-0.21119	-9.8155E-05	-0.29229	-0.00013585	464.77653628616827	51.298	0.53358	51.022	50.74	51.274	-0.27643					44	13	4	0	0	0	0.95679	1	5261	5261		44.117	0	1	3265500	+		9088	26249	6039	6054	10687	10687					0.07226357931551775
DVLKISGPCI	10	Unmodified	_DVLKISGPCI_					0	0	0		ENSG00000163746|ENST00000696113|PLSCR2;nc|ENSG00000163746|Q9NRY7-3|PLSCR2;nc|ENSG00000163746|Q9NRY7|PLSCR2	ENSG00000163746|ENST00000696113|PLSCR2	ENSG00000163746|ENST00000696113|PLSCR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.790283203125	2	522.791535	1043.56852	-0.16291	-8.5166E-05	-3.2539	-0.0017011	-3.4168	-0.0017863	522.7896670460145	70.585	0.66798	70.598	70.347	71.015	0.012413					33	15	3	0	0	0	0.57594	1	8457	8457		79.713	5.4575	1	918300			9089	7139	6040	6055	10688	10688					0.048475538854063416
DVLLHAGNR	9	Unmodified	_DVLLHAGNR_					0	0	0		ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.77490234375	2	497.775065	993.535577	0.38742	0.00019285	-0.58383	-0.00029062	-0.19641	-9.7768E-05	497.7747674784176	100.81	1.1712	100.67	100.46	101.63	-0.13364					54	28	3	0	0	0	0.33245	1	12503	12503		71.296	5.4925	1	642740			9090	8177	6041	6056	10689	10689					0.03855107877575392
DVLLLRGR	8	Unmodified	_DVLLLRGR_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7820739746094	2	471.298176	940.581799	-0.18763	-8.8428E-05	-0.042307	-1.9939E-05	-0.22993	-0.00010837	471.29797706496777	29.676	0.48934	29.679	29.427	29.916	0.0031357					20	11	2	0	0	0	0.027866	1	1797	1797		12.207	5.0135	1	130630			9091	2718	6042	6057	10690	10690					0.10913172779669367
DVLLLRGR	8	Unmodified	_DVLLLRGR_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.298176	940.581799	-0.87321	-0.00041154	0.55767	0.00026283	-0.31553	-0.00014871	471.2982781793834	29.717	0.44777	29.717	29.447	29.895	0	0.069824	0.00045707	NaN	12.207	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105990			9092	2718	6042	6057							0.10913172779669367
DVLLLRGR	8	Unmodified	_DVLLLRGR_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.298176	940.581799	-0.18602	-8.7672E-05	-0.46767	-0.00022041	-0.6537	-0.00030809	471.29780054761255	29.467	0.31722	29.545	29.368	29.685	0.078344	-0.10191	-0.00050942	NaN	12.207	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140960			9093	2718	6042	6057							0.10913172779669367
DVLLVLTQ	8	Unmodified	_DVLLVLTQ_					0	0	0			REV__GPR26|p.V277Cfs*33|1|0.2|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant	REV__GPR26|p.V277Cfs*33|1|0.2|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2857360839844	2	450.773668	899.532783	-0.12068	-5.44E-05	0.37791	0.00017035	0.25723	0.00011595	450.77365800985336	53.946	0.56615	53.7	53.383	53.949	-0.2453					38	17	3	0	0	0	0.027866	1	5662	5662		20.947	0	1	3698200	+		9094	24961	6043	6058	10691	10691					0.07899839700041866
DVLPKKPRQ	9	Unmodified	_DVLPKKPRQ_					0	0	0			REV__ENSG00000120896|ENST00000240123|SORBS3	REV__ENSG00000120896|ENST00000240123|SORBS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.831787109375	2	540.82984	1079.64513	-0.45582	-0.00024652	3.2955	0.0017823	2.8397	0.0015358	540.8316944739571	75.373	1.966	75.383	75.051	77.017	0.010376					182	50	6	0	0	0	0.62163	1	9223	9223		51.335	1.8939	1	103560000	+		9095	22565	6044	6059	10692	10692					0.10849113496897189
DVLPTEEESL	10	Unmodified	_DVLPTEEESL_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.2717895507812	2	566.274426	1130.5343	-0.29915	-0.0001694	-4.4322	-0.0025098	-4.7313	-0.0026792	566.2721045457445	96.303	2.4519	96.147	95.313	97.765	-0.15646					86	55	4	0	0	0	0.74632	1	11920	11920		64.207	3.2353	1	1015900	+		9096	25923	6045	6060	10693	10693					-0.025746157925141233
DVLQWRAH	8	Unmodified	_DVLQWRAH_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.285400390625	2	512.769783	1023.52501	-0.11501	-5.8973E-05	-1.8385	-0.00094273	-1.9535	-0.0010017	512.7686752330351	55.882	1.6876	55.882	55.216	56.904	0					100	46	3	0	0	0	0.027866	1	6134	6134		19.36	0	1	1668000			9097	6804	6046	6061	10694	10694					0.014191252231285034
DVLRPKGTS	9	Unmodified	_DVLRPKGTS_					0	0	0			REV__ENST00000416904.4_1_12:53574525-53575604:+|nuORF	REV__ENST00000416904.4_1_12:53574525-53575604:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.29034423828125	2	486.777274	971.539994	-0.66546	-0.00032393	-3.4407	-0.0016748	-4.1061	-0.0019988	486.7759071719979	27.645	0.77999	27.645	27.144	27.924	0					39	20	3	0	0	0	0.024294	1	1517	1517		55.504	28.811	1	696190	+		9098	32086	6047	6062	10695	10695					0.05308572300486958
DVLTLFGDYL	10	Unmodified	_DVLTLFGDYL_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MSMS	OPSCC_40_ClassI_Rep-1	4	578.3025512695312	2	578.300247	1154.58594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.576	1	99.44	98.94	99.94	-0.13526								0	0	0	0.73832	1	12338	12338		35.618	1.4457	1		+		9099	23822	6048	6063	10696	10696					0.01483172692064727
DVLTNLILL	9	Unmodified	_DVLTNLILL_					0	0	0		CON__REFSEQ:XP_001252647;CON__A2I7N3	CON__REFSEQ:XP_001252647;CON__A2I7N3	CON__A2I7N3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2972106933594	2	507.3157	1012.61685	0.23652	0.00011999	-1.2809	-0.00064985	-1.0444	-0.00052985	507.3148404413011	58.539	0.66742	58.539	58.228	58.895	0					35	17	3	0	0	0	0.02435	1	6621	6621		42.396	6.7778	1	708610		+	9100	479;576	6049	6064	10697	10697					0.11104370796977037
DVMAKHSVK	9	Unmodified	_DVMAKHSVK_					0	0	0			REV__ENSG00000186910|ENST00000334708|SERPINA11	REV__ENSG00000186910|ENST00000334708|SERPINA11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.79229736328125	2	507.773677	1013.5328	-1.1134	-0.00056536	0.71959	0.00036539	-0.39382	-0.00019997	507.7740718421472	44.084	0.35548	43.94	43.71	44.065	-0.14471					16	9	2	0	0	0	0.023635	1	4162	4162		66.429	14.13	1	314820	+		9101	27895	6050	6065	10698	10698					0.026575164283940467
DVMMKYLD	8	Unmodified	_DVMMKYLD_					0	0	0		ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;ENST00000574215.5_1_3:27203940-27332977:-|nuORF;nc|ENSG00000163491|Q6ZWH5-7|NEK10;nc|ENSG00000163491|Q6ZWH5-6|NEK10;nc|ENSG00000163491|Q6ZWH5-5|NEK10	ENSG00000163491|ENST00000691995|NEK10	ENSG00000163491|ENST00000691995|NEK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7928161621094	2	507.735371	1013.45619	-1.2329	-0.000626	-0.54005	-0.0002742	-1.773	-0.0009002	507.7356582751296	44.29	0.097115	44.146	44.065	44.162	-0.14471					4	2	2	0	0	0	0.027866	1	4195	4195		65.803	0	1	94401			9102	7087	6051	6066	10699	10699					-0.050000431830994785
DVMTDLLKV	9	Unmodified	_DVMTDLLKV_					0	0	0			REV__ENST00000606952.5_1_1:156182806-156203452:+|nuORF	REV__ENST00000606952.5_1_1:156182806-156203452:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2824096679688	2	517.283543	1032.55253	-0.4359	-0.00022548	-2.0258	-0.0010479	-2.4617	-0.0012734	517.2824729486334	91.566	0.95208	91.553	91.28	92.232	-0.012383					36	22	2	0	0	0	0.10174	1	11575	11575		110.12	25.204	1	821740	+		9103	25344	6052	6067	10700	10700					0.03755847648517374
DVMVKVKAL	9	Unmodified	_DVMVKVKAL_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7689514160156	2	501.804445	1001.59434	-0.76157	-0.00038216	0.11151	5.5958E-05	-0.65005	-0.0003262	502.3064027303982	65.777	0.4557	65.526	65.27	65.726	-0.25111					14	10	2	0	0	0	0.024457	1	7492	7492		21.96	4.5949	1	100380	+		9104	26475	6053	6068	10701	10701					0.09360448127688414
DVNCACVSHS	10	Unmodified	_DVNCACVSHS_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7046508789062	2	517.705134	1033.39571	-1.1903	-0.00061621	1.4633	0.00075756	0.27302	0.00014135	517.705704793459	33.843	0.77647	33.667	33.352	34.128	-0.17557					58	19	4	0	0	0	1.0002	1	2436	2436		45.972	0.020292	1	1150400			9105	7425	6054	6069	10702	10702					-0.11964760513478723
DVNCNNKVST	10	Unmodified	_DVNCNNKVST_					0	0	0			REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42	REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2791748046875	2	547.250763	1092.48697	-0.75516	-0.00041326	-2.2619	-0.0012379	-3.0171	-0.0016511	547.2495234016625	28.036	0.89953	27.791	27.463	28.363	-0.24524					51	21	3	0	0	0	0.03519	1	1582	1582		40.778	22.516	1	507640	+		9106	28005	6055	6070	10703	10703					-0.05557173544480065
DVNCNNKVST	10	Unmodified	_DVNCNNKVST_					0	0	0			REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42	REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2796020507812	2	547.250763	1092.48697	-0.92264	-0.00050491	-2.0497	-0.0011217	-2.9724	-0.0016266	547.2496209948227	27.844	0.85406	27.676	27.359	28.213	-0.16816					55	20	4	0	0	0	0.03519	1	1558	1558		60.972	26.799	1	570300	+		9107	28005	6055	6070	10704	10704					-0.05557173544480065
DVNCNNKVST	10	Unmodified	_DVNCNNKVST_					0	0	0			REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42	REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2797241210938	2	547.250763	1092.48697	-0.6069	-0.00033213	-2.6338	-0.0014413	-3.2407	-0.0017735	547.2492651251583	27.778	0.68799	27.622	27.307	27.995	-0.15664					39	16	3	0	0	0	0.03519	1	1563	1563		42.396	3.59	1	584560	+		9108	28005	6055	6070	10705	10705					-0.05557173544480065
DVNDRMAILV	10	Unmodified	_DVNDRMAILV_					0	0	0		PRPS1L1|p.V215M|1|0.17|ENSG00000229937|chr7:18027140-18027140|C/T|missense_variant	PRPS1L1|p.V215M|1|0.17|ENSG00000229937|chr7:18027140-18027140|C/T|missense_variant	PRPS1L1|p.V215M|1|0.17|ENSG00000229937|chr7:18027140-18027140|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2791137695312	2	573.302798	1144.59104	0.088136	5.0529E-05	0.94877	0.00054393	1.0369	0.00059446	573.3034308663028	77.725	0.50562	77.463	77.356	77.861	-0.26202					25	11	3	0	0	0	0.03519	1	9253	9253		21.96	0	1	757920			9109	18997	6056	6071	10706	10706					0.024531532830224023
DVNGLVAVR	9	Unmodified	_DVNGLVAVR_					0	0	0			REV__nc|ENSG00000172432|Q9BX10-2|GTPBP2	REV__nc|ENSG00000172432|Q9BX10-2|GTPBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.74884033203125	2	471.771991	941.529429	0.28617	0.00013501	2.6617	0.0012557	2.9479	0.0013907	471.7716624292649	45.538	0.94944	45.538	45.214	46.163	0					72	27	4	0	0	0	0.024354	1	4413	4413		30.504	9.5567	1	2264800	+		9110	26670	6057	6072	10707	10707					0.05632589646052111
DVNHRRKQ	8	Unmodified	_DVNHRRKQ_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7381591796875	2	526.789038	1051.56352	0.012746	6.7147E-06	2.1697	0.001143	2.1825	0.0011497	526.7898231318526	53.203	0.2286	53.013	52.905	53.133	-0.18982					7	5	2	0	0	0	0.027866	1	5553	5553		27.882	7.8855	1	80825	+		9111	25841	6058	6073	10708	10708					0.039804308576549374
DVNLIRFGT	9	Unmodified	_DVNLIRFGT_					0	0	0			REV__nc|ENSG00000163873|Q13003-2|GRIK3	REV__nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2507934570312	2	517.785099	1033.55564	0.14828	7.6775E-05	2.2917	0.0011866	2.44	0.0012634	517.7857731564679	46.934	0.31105	46.664	46.49	46.801	-0.26939					13	8	2	0	0	0	0.024427	1	4531	4531		26.693	0	1	223700	+		9112	25649	6059	6074	10709	10709					0.04020858817534645
DVNWKDYV	8	Unmodified	_DVNWKDYV_					0	0	0		ENSG00000008282|ENST00000455385|SYPL1;nc|ENSG00000008282|Q16563|SYPL1	ENSG00000008282|ENST00000455385|SYPL1	ENSG00000008282|ENST00000455385|SYPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.732666015625	2	519.748182	1037.48181	-0.14816	-7.7004E-05	2.8308	0.0014713	2.6827	0.0013943	519.7493160897247	57.153	0.64213	56.989	56.675	57.318	-0.16432					39	17	3	0	0	0	0.027866	1	6394	6394		27.882	5.9224	1	683400			9113	841	6060	6075	10710	10710					-0.03543109344809636
DVNYIKSLL	9	Unmodified	_DVNYIKSLL_					0	0	0			REV__ENST00000427776.1_1_7:66379888-66379927:+|nuORF	REV__ENST00000427776.1_1_7:66379888-66379927:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7740478515625	2	532.802957	1063.59136	-0.13211	-7.0388E-05	-0.32879	-0.00017518	-0.4609	-0.00024557	532.8027202540534	50.959	0.18882	50.682	50.589	50.778	-0.27643					6	4	2	0	0	0	0.024374	1	5201	5201		49.442	1.7842	1	92509	+		9114	32304	6061	6076	10711	10711					0.062108962745242025
DVPEECYNL	9	Unmodified	_DVPEECYNL_					0	0	0			REV__CON__P00735	REV__CON__P00735	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.3221435546875	2	541.228965	1080.44338	-1.0237	-0.00055403	-2.9139	-0.0015771	-3.9376	-0.0021311	541.226492006833	60.364	0.42033	60.151	60	60.421	-0.2134					13	10	2	0	0	0	0.024477	1	6923	6923		27.882	0	1	111630	+	+	9115	19534	6062	6077	10712	10712					-0.09362783041660805
DVPEECYNL	9	Unmodified	_DVPEECYNL_					0	0	0			REV__CON__P00735	REV__CON__P00735	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.322265625	2	541.228965	1080.44338	-1.9835	-0.0010735	-3.3877	-0.0018335	-5.3712	-0.002907	541.2270526260941	60.041	0.30626	60.12	59.936	60.242	0.078884					12	7	2	0	0	0	0.024374	1	6824	6824		19.104	0	1	95144	+	+	9116	19534	6062	6077	10713	10713					-0.09362783041660805
DVPEEKPSN	9	Unmodified	_DVPEEKPSN_					0	0	0		nc|ENSG00000138380|Q8N187-2|CARF;nc|ENSG00000138380|Q8N187-3|CARF;ENSG00000138380|ENST00000438828|CARF	nc|ENSG00000138380|Q8N187-2|CARF	nc|ENSG00000138380|Q8N187-2|CARF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8106384277344	2	507.740554	1013.46655	-0.27454	-0.0001394	1.0677	0.00054213	0.79318	0.00040273	507.7409175733783	45.333	1.1148	45.08	44.748	45.863	-0.25252					55	30	3	0	0	0	0.024457	1	4333	4333		21.96	0	1	1249200			9117	18320	6063	6078	10714	10714					-0.0396402093266488
DVPFKVKVGHI	11	Unmodified	_DVPFKVKVGHI_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8690795898438	2	619.866423	1237.71829	0.12405	7.6895E-05	4.447	0.0027565	4.5711	0.0028334	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0429	1	11494	11494		27.047	0.3544	1	1596200			9118	10074	6064	6079	10715	10715					0.1089424221952413
DVPFKYEEV	9	Unmodified	_DVPFKYEEV_					0	0	0			REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2763061523438	2	563.276772	1124.53899	-0.78978	-0.00044486	0.30193	0.00017007	-0.48785	-0.00027479	563.2769492546245	81.784	2.2277	81.642	81.151	83.379	-0.14248					171	51	5	0	0	0	0.23085	1	9866	9866		84.916	8.1414	1	6248000	+		9119	24306	6065	6080	10716	10716					-0.018296868591050952
DVPGAVQAPE	10	Unmodified	_DVPGAVQAPE_					0	0	0			REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	REV__sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7923583984375	2	491.745639	981.476725	-0.15411	-7.5785E-05	0.5705	0.00028054	0.41639	0.00020476	491.74583283968656	61.27	0.55527	61.051	60.751	61.306	-0.21859					34	14	3	0	0	0	0.03519	1	7020	7020		39.253	25.116	1	618030	+		9120	37530	6066	6081	10717	10717					-0.014754132074244808
DVPIISFLL	9	Unmodified	_DVPIISFLL_					0	0	0			REV__ENSG00000169083|ENST00000374690|AR	REV__ENSG00000169083|ENST00000374690|AR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7826232910156	2	508.804968	1015.59538	0.0043707	2.2238E-06	2.3763	0.0012091	2.3806	0.0012113	508.8070899160579	88.765	0.2536	88.628	88.566	88.819	-0.13744					6	5	2	0	0	0	0.024541	1	10838	10838		26.796	0	1	58268	+		9121	26316	6067	6082	10718	10718					0.08820985768238643
DVPLHLESF	9	Unmodified	_DVPLHLESF_					0	0	0			REV__ENST00000391911.5_1_1:209823343-209823388:-|nuORF	REV__ENST00000391911.5_1_1:209823343-209823388:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3162841796875	2	528.771657	1055.52876	1.6121	0.00085243	1.329	0.00070276	2.9411	0.0015552	528.7721424261788	36.432	0.55692	36.234	35.979	36.536	-0.19829					31	13	3	0	0	0	0.024292	1	2844	2844		25.574	0	1	936680	+		9122	31588	6068	6083	10719	10719					0.003217502063534994
DVPQVKITF	9	Unmodified	_DVPQVKITF_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2587280273438	2	523.797675	1045.5808	-1.0014	-0.00052454	-2.656	-0.0013912	-3.6574	-0.0019157	523.7952719574133	26.144	0.36687	26.144	25.957	26.324	0					16	8	3	0	0	0	0.024487	1	1322	1322		24.203	9.5387	1	103270	+		9123	27536	6069	6084	10720	10720					0.059829136200733046
DVPWNVVPE	9	Unmodified	_DVPWNVVPE_					0	0	0		VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant;ENSG00000110799|ENST00000261405|VWF	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.76611328125	2	527.763832	1053.51311	-0.18174	-9.5916E-05	2.9874	0.0015767	2.8057	0.0014807	527.7652318408423	56.694	1.0714	56.792	56.397	57.468	0.097893					54	21	3	0	0	0	0.2101	1	6260	6260		87.696	5.3914	1	2281400			9124	3064	6070	6085	10721	10721					-0.011505363107289668
DVPYVTINL	9	Unmodified	_DVPYVTINL_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.8190307617188	2	517.281857	1032.54916	0.29137	0.00015072	-2.1551	-0.0011148	-1.8637	-0.00096406	517.2818606007639	91.666	0.77793	91.526	91.189	91.967	-0.13942					63	17	5	0	0	0	0.024397	1	11265	11265		31.53	3.6476	1	277740	+		9125	25824	6071	6086	10722	10722					0.034189208661246084
DVQKKLMSL	9	Unmodified	_DVQKKLMSL_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.3068237304688	2	531.30481	1060.59507	-0.59219	-0.00031463	0.23868	0.00012681	-0.35351	-0.00018782	531.3048332996739	47.974	0.73618	47.876	47.52	48.257	-0.097553					44	19	3	0	0	0	0.11727	1	4729	4729		106.68	23.933	1	2685500			9126	2250	6072	6087	10723	10723					0.0671924277673952
DVQKKLMSL	9	Unmodified	_DVQKKLMSL_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3056640625	2	531.30481	1060.59507	-1.3576	-0.00072131	0.82391	0.00043775	-0.5337	-0.00028356	531.3051987883268	48.338	0.55378	48.062	47.738	48.292	-0.27598					42	14	3	0	0	0	0.030064	2	4770	4770;4783		141.52	42.891	1	2767800			9127	2250	6072	6087	10724;10725	10724					0.0671924277673952
DVQKKLMSL	9	Unmodified	_DVQKKLMSL_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.3060302734375	2	531.30481	1060.59507	0.087549	4.6515E-05	-0.58217	-0.00030931	-0.49462	-0.00026279	531.3043997538773	48.1	0.84277	47.914	47.491	48.334	-0.18684					50	22	3	0	0	0	0.22902	1	4741	4741		85.161	5.4482	1	2435600			9128	2250	6072	6087	10726	10726					0.0671924277673952
DVQKVLKQ	8	Unmodified	_DVQKVLKQ_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7352600097656	2	479.290017	956.565481	-1.3191	-0.00063225	1.2243	0.00058679	-0.094861	-4.5466E-05	479.29070828666204	60.056	0.92561	60.135	59.611	60.536	0.078888					61	24	4	0	0	0	0.027866	1	6752	6752		33.516	0	1	1133100			9129	1063	6073	6088	10727	10727					0.08546046822903008
DVQRILSQ	8	Unmodified	_DVQRILSQ_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2926940917969	2	479.769448	957.524344	0.85074	0.00040816	4.2049	0.0020174	5.0557	0.0024256	479.77101817227714	88.513	0.8951	88.486	88.091	88.986	-0.027657					55	20	4	0	0	0	0.027866	1	11172	11172		26.693	0	1	557000			9130	1916	6074	6089	10728	10728					0.04388285783431911
DVQSRWLN	8	Unmodified	_DVQSRWLN_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7494201660156	2	509.259248	1016.50394	-1.4588	-0.00074293	1.615	0.00082244	0.15614	7.9513E-05	509.2598609757353	30.069	0.52935	30.069	29.814	30.343	0					18	12	2	0	0	0	0.027866	1	1917	1917		51.335	1.8939	1	120810	+		9131	22308	6075	6090	10729	10729					-0.0036488487638735023
DVRAALLAQA	10	Unmodified	_DVRAALLAQA_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7538452148438	2	514.298373	1026.58219	-0.11568	-5.9495E-05	-0.67171	-0.00034546	-0.78739	-0.00040495	514.2979480925944	51.036	0.76132	51.036	50.74	51.501	0					32	20	2	0	0	0	0.03519	1	5357	5357		13.454	0	1	659150	+		9132	21664	6076	6091	10730	10730					0.06996547708831713
DVRAMRRAI	9	Unmodified	_DVRAMRRAI_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3025512695312	2	544.311292	1086.60803	-0.74467	-0.00040533	0.79474	0.00043259	0.050073	2.7255E-05	544.3116860862172	64.518	1.0611	64.518	64.097	65.158	0					46	28	2	0	0	0	0.024323	1	7657	7657		53.351	0	1	5378600			9133	7526	6077	6092	10731	10731					0.06819118679482017
DVRFLLFF	8	Unmodified	_DVRFLLFF_					0	0	0		ENST00000598962.5_1_19:40871500-40871671:+|nuORF	ENST00000598962.5_1_19:40871500-40871671:+|nuORF	ENST00000598962.5_1_19:40871500-40871671:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.3294067382812	2	528.797478	1055.5804	-0.095227	-5.0356E-05	-2.7614	-0.0014602	-2.8566	-0.0015106	529.2975874870017	77.952	0.42537	77.79	77.569	77.994	-0.16196					17	9	3	0	0	0	0.027866	1	9249	9249		25.45	0	1	87871			9134	17479	6078	6093	10732	10732					0.054835386909189765
DVRGRWYGL	9	Unmodified	_DVRGRWYGL_					0	0	0			REV__ENST00000461221.5_1_17:41277205-41277244:-|nuORF	REV__ENST00000461221.5_1_17:41277205-41277244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2540893554688	2	561.296165	1120.57778	1.358	0.00076224	4.1065	0.002305	5.4645	0.0030672	561.2985840899212	63.955	0.50182	63.955	63.666	64.168	0					22	13	2	0	0	0	0.023596	1	7543	7543		63.306	6.5852	1	315340	+		9135	32871	6079	6094	10733	10733					0.022310832859375296
DVRISSVKV	9	Unmodified	_DVRISSVKV_					0	0	0			REV__LRAT|p.A106S|1|0.69|ENSG00000121207|chr4:154744642-154744642|G/T|missense_variant	REV__LRAT|p.A106S|1|0.69|ENSG00000121207|chr4:154744642-154744642|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2744140625	2	501.800749	1001.58694	-0.2842	-0.00014261	0.30564	0.00015337	0.021436	1.0757E-05	501.80067213753085	48.136	0.61662	48.203	47.903	48.519	0.066795					22	16	2	0	0	0	0.024261	1	4871	4871		64.207	0	1	167640	+		9136	36317	6080	6095	10734	10734					0.08621431851611305
DVRITEGPK	9	Unmodified	_DVRITEGPK_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29254150390625	2	507.782556	1013.55056	0.23694	0.00012032	-2.5919	-0.0013161	-2.355	-0.0011958	507.78224767326134	74.481	0.75858	74.222	73.86	74.619	-0.25887					22	17	2	0	0	0	0.024367	1	9075	9075		62.107	24.948	1	100520	+		9137	22381	6081	6096	10735	10735					0.04432554954905754
DVRNRQQDV	9	Unmodified	_DVRNRQQDV_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.3425903320312	2	565.289068	1128.56358	-1.1883	-0.00067174	-2.8944	-0.0016362	-4.0828	-0.0023079	565.2873294500189	46.039	0.4903	45.887	45.719	46.209	-0.15157					24	13	2	0	0	0	0.0242	1	4556	4556		69.628	28.849	1	267450			9138	3852	6082	6097	10736	10736					0.004443860669880451
DVRPGKKN	8	Unmodified	_DVRPGKKN_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2643737792969	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0106	1	10191	10191		35.618	2.1027	1	3048400	+		9139	22103	6083	6098	10737	10737					0.05435722848858404
DVRPGKKN	8	Unmodified	_DVRPGKKN_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2639465332031	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0106	2	9958	9958;9984		35.618	2.1027	1	2920900	+		9140	22103	6083	6098	10738;10739	10738					0.05435722848858404
DVRPGKKN	8	Unmodified	_DVRPGKKN_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2641296386719	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	0.95679	1	9790	9790		44.117	5.3107	1	4140300	+		9141	22103	6083	6098	10740	10740					0.05435722848858404
DVRPGKKN	8	Unmodified	_DVRPGKKN_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2640686035156	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0574	2	9703	9703;9798		27.882	0	1	3503800	+		9142	22103	6083	6098	10741;10742	10741					0.05435722848858404
DVRPRLAS	8	Unmodified	_DVRPRLAS_					0	0	0		ENSG00000163645|ENST00000295910|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6	ENSG00000163645|ENST00000295910|ERICH6	ENSG00000163645|ENST00000295910|ERICH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.26385498046875	2	457.264333	912.514114	0.1671	7.6407E-05	0.47441	0.00021693	0.6415	0.00029334	457.26446009858824	78.667	1.666	78.667	78.162	79.828	0					77	39	2	0	0	0	0.98759	1	9744	9744		39.253	3.6345	1	763610			9143	7125	6084	6099	10743	10743					0.05435722848858404
DVRRKQSV	8	Unmodified	_DVRRKQSV_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9|TBC1D30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2655944824219	2	494.28834	986.562127	0.53076	0.00026235	2.118	0.0010469	2.6487	0.0013092	494.2892516527049	74.565	0.50112	74.382	74.224	74.725	-0.18279					15	11	2	0	0	0	0.027866	1	8793	8793		76.774	24.475	1	104480	+		9144	37221	6085	6100	10744	10744					0.06830796768906566
DVRVNKLLQH	10	Unmodified	_DVRVNKLLQH_					0	0	0		nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B;ENST00000547496.5_1_12:89853476-89885774:-|nuORF;ENST00000539190.6_1_12:89855074-89919672:-|nuORF	nc|ENSG00000139323|Q8TC44-2|POC1B	nc|ENSG00000139323|Q8TC44-2|POC1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3558959960938	2	611.356754	1220.69895	-0.19635	-0.00012004	-1.1472	-0.00070135	-1.3436	-0.00082139	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.0992	1	11257	11257		32.812	3.6424	1	5237500			9145	5324	6086	6101	10745	10745					0.09743285928607293
DVRWALLD	8	Unmodified	_DVRWALLD_					0	0	0			REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF	REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30596923828125	2	494.266542	986.51853	0.66101	0.00032671	-0.38504	-0.00019031	0.27596	0.0001364	494.2660090978309	55.89	1.1282	55.89	55.149	56.277	0					63	31	3	0	0	0	0.027866	1	6249	6249		93.195	2.4188	1	642680	+		9146	26965	6087	6102	10746	10746					0.024731872717552505
DVRWVITV	8	Unmodified	_DVRWVITV_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.2861633300781	2	494.284734	986.554916	-0.19449	-9.6135E-05	3.801	0.0018788	3.6065	0.0017826	494.2863595933186	53.872	1.4044	53.725	53.31	54.714	-0.14723					100	39	3	0	0	0	0.68164	1	5837	5837		68.787	5.8084	1	2595600			9147	7478	6088	6103	10747	10747					0.06110064168467488
DVRWVITV	8	Unmodified	_DVRWVITV_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.284734	986.554916	0.20558	0.00010161	3.267	0.0016148	3.4726	0.0017165	494.2861181105808	53.809	1.3857	53.809	53.337	54.723	0	0.026623	-0.00025142	NaN	68.787	92	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2233500			9148	7478	6088	6103							0.06110064168467488
DVRWVITV	8	Unmodified	_DVRWVITV_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.284734	986.554916	-0.12505	-6.1809E-05	3.5962	0.0017776	3.4712	0.0017158	494.2862105082284	53.717	1.2875	53.813	53.336	54.623	0.095665	0.030713	7.4022E-05	NaN	68.787	90	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2586600			9149	7478	6088	6103							0.06110064168467488
DVSAWLPDI	9	Unmodified	_DVSAWLPDI_					0	0	0		ENST00000375165.5_1_9:100368507-100388213:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	ENST00000375165.5_1_9:100368507-100388213:-|nuORF	ENST00000375165.5_1_9:100368507-100388213:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2763366699219	2	508.258382	1014.50221	-0.37743	-0.00019183	-4.4256	-0.0022493	-4.803	-0.0024412	508.7590728875593	78.19	0.32272	78.19	77.959	78.282	0					13	7	2	0	0	0	0.024405	1	9663	9663		20.947	0	1	139750			9150	5066	6089	6104	10748	10748					-0.004459386850044211
DVSDLRAPL	9	Unmodified	_DVSDLRAPL_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.3109130859375	2	493.269281	984.52401	-0.34239	-0.00016889	-4.1064	-0.0020256	-4.4488	-0.0021945	493.2659474883104	62.5	0.46902	62.242	61.82	62.289	-0.25824					21	11	3	0	0	0	0.024397	1	6967	6967		31.53	0	1	185120	+		9151	23128	6090	6105	10749	10749					0.031128660635772576
DVSFNKVTL	9	Unmodified	_DVSFNKVTL_					0	0	0		ENST00000510270.5_1_4:145916513-145916567:-|nuORF	ENST00000510270.5_1_4:145916513-145916567:-|nuORF	ENST00000510270.5_1_4:145916513-145916567:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.780517578125	2	511.779482	1021.54441	-0.38074	-0.00019485	1.4427	0.00073834	1.062	0.00054349	511.78026848532875	92.972	1.1025	92.98	92.629	93.732	0.0077286					54	25	3	0	0	0	0.6504	1	11730	11730		49.442	1.7842	1	788280			9152	15819	6091	6106	10750	10750					0.034500367233818
DVSIEREDKYW	11	Unmodified	_DVSIEREDKYW_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7321472167969	3	480.564896	1438.67286	0.0049727	2.3897E-06	-0.26761	-0.0001286	-0.26264	-0.00012621	480.5647933723784	32.129	0.42892	32.129	31.989	32.418	0					16	10	2	0	0	0	0.024746	1	2192	2192		26.75	0	1	190310	+		9153	21246	6092	6107	10751	10751					-0.028930728241903125
DVSIQGWGL	9	Unmodified	_DVSIQGWGL_					0	0	0		ENSG00000131873|ENST00000254190|CHSY1;ENST00000543813.1_1_15:101717595-101728206:-|nuORF	ENSG00000131873|ENST00000254190|CHSY1	ENSG00000131873|ENST00000254190|CHSY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2690734863281	2	487.750724	973.486896	-1.0131	-0.00049414	3.4309	0.0016734	2.4178	0.0011793	487.7519525158483	53.358	0.36397	53.453	53.3	53.664	0.095669					12	9	2	0	0	0	0.024323	1	5711	5711		44.117	0	1	75432			9154	4558	6093	6108	10752	10752					-0.0009080548219344564
DVSLTVVAV	9	Unmodified	_DVSLTVVAV_					0	0	0			REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.7633056640625	2	451.7633	901.512048	-0.33868	-0.000153	0.63546	0.00028708	0.29678	0.00013408	451.7633904035265	77.34	0.66515	77.179	76.946	77.611	-0.16196					33	15	3	0	0	0	0.18915	1	9213	9213		90.777	5.4172	1	1223000	+		9155	36687	6094	6109	10753	10753					0.057352493203779886
DVSLTVVAV	9	Unmodified	_DVSLTVVAV_					0	0	0			REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.7632141113281	2	451.7633	901.512048	-0.03533	-1.5961E-05	0.022707	1.0258E-05	-0.012623	-5.7025E-06	451.7632073420296	78.096	1.5716	77.94	77.533	79.104	-0.15591					87	36	4	0	0	0	0.074956	1	9322	9322		119.56	4.971	1	2097100	+		9156	36687	6094	6109	10754	10754					0.057352493203779886
DVSQLRKEA	9	Unmodified	_DVSQLRKEA_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|43|1|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|43|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2896118164062	2	523.285463	1044.55637	-0.28442	-0.00014883	-1.2975	-0.00067895	-1.5819	-0.00082778	523.2829393210208	56.723	0.77132	56.821	56.397	57.168	0.097893					37	21	3	0	0	0	0.023817	1	6268	6268		34.173	0	1	205730	+		9157	36128	6095	6110	10755	10755					0.03587653466570373
DVSRLAYTQ	9	Unmodified	_DVSRLAYTQ_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.3244018554688	2	526.772188	1051.52982	-0.24125	-0.00012709	-0.75338	-0.00039686	-0.99463	-0.00052394	526.7697505462099	32.443	0.62824	32.206	31.91	32.539	-0.23666					25	14	3	0	0	0	0.024021	1	2208	2208		49.442	0	1	344220			9158	2369	6096	6111	10756	10756					0.006119645752278302
DVSRLAYTQ	9	Unmodified	_DVSRLAYTQ_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.772188	1051.52982	0.28521	0.00015024	-5.0175	-0.0026431	-4.7323	-0.0024929	526.7694276674972	32.505	0.41096	32.312	32.205	32.616	-0.19261	0.05286	-0.00054629	NaN	49.442	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323550			9159	2369	6096	6111							0.006119645752278302
DVSSSAVVL	9	Unmodified	_DVSSSAVVL_					0	0	0		ENST00000303460.4_1_12:54378975-54379038:+|nuORF	ENST00000303460.4_1_12:54378975-54379038:+|nuORF	ENST00000303460.4_1_12:54378975-54379038:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.1990051269531	2	438.737283	875.460012	-0.31247	-0.00013709	0.35097	0.00015398	0.038494	1.6889E-05	438.7373799783237	61.916	0.39067	61.702	61.501	61.892	-0.21375					17	9	2	0	0	0	0.024354	1	6915	6915		47.916	30.551	1	144740			9160	11971	6097	6112	10757	10757					0.01730085906626755
DVSWTRAQL	9	Unmodified	_DVSWTRAQL_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7843017578125	2	538.28018	1074.54581	-0.59915	-0.00032251	-1.2429	-0.00066905	-1.8421	-0.00099156	538.7832546406702	57.366	0.6847	57.366	57.073	57.758	0					32	17	2	0	0	0	0.23085	1	6455	6455		84.916	9.8722	1	6131600	+		9161	28588	6098	6113	10758	10758					0.011516708121462216
DVTAINNSN	9	Unmodified	_DVTAINNSN_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.2805480957031	2	474.225071	946.435589	-0.029084	-1.3792E-05	-0.5993	-0.0002842	-0.62838	-0.00029799	474.22477810246846	54.093	0.35382	53.848	53.657	54.01	-0.2453					22	11	2	0	0	0	0.023837	1	5676	5676		37.812	0	1	349790	+		9162	26844	6099	6114	10759	10759					-0.039771742468929006
DVTDKILTE	9	Unmodified	_DVTDKILTE_					0	0	0			REV__CEP350|p.I3101V|1|0.34|ENSG00000135837|chr1:180111108-180111108|A/G|missense_variant	REV__CEP350|p.I3101V|1|0.34|ENSG00000135837|chr1:180111108-180111108|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2745361328125	2	517.274229	1032.53391	-0.69245	-0.00035819	1.2923	0.00066846	0.59981	0.00031027	517.2745009008704	25.838	0.75816	25.815	25.485	26.243	-0.023088					38	17	4	0	0	0	0.56934	1	1259	1259		54.776	1.8396	1	538740	+		9163	19293	6100	6115	10760	10760					0.018940092782941065
DVTGAMIYLA	10	Unmodified	_DVTGAMIYLA_					0	0	0			REV__ENSG00000110917|ENST00000228506|MLEC	REV__ENSG00000110917|ENST00000228506|MLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.775390625	2	527.267893	1052.52123	0.22052	0.00011627	0.49569	0.00026136	0.7162	0.00037763	527.767433177737	59.649	0.71311	59.401	59.01	59.723	-0.24841					51	17	5	0	0	0	0.03519	1	6537	6537		27.882	0	1	1191400	+		9164	21881	6101	6116	10761	10761					-0.002927253855887102
DVTICTLIL	9	Unmodified	_DVTICTLIL_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.78167724609375	2	495.780636	989.546719	-1.2563	-0.00062286	1.1549	0.00057258	-0.10142	-5.0281E-05	495.78102939883263	90.451	2.7585	90.296	89.436	92.195	-0.1552					122	65	3	0	0	0	0.43973	1	11063	11063		63.306	2.3343	1	1061600	+		9165	26646	6102	6117	10762	10762					0.05152749136846069
DVTKRLLI	8	Unmodified	_DVTKRLLI_					0	0	0		ENSG00000119812|ENST00000238823|FAM98A;ENST00000498340.5_1_2:33812358-33824321:-|nuORF;ENST00000464415.1_1_2:33817123-33824435:-|nuORF	ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7825012207031	2	479.30821	956.601866	0.024387	1.1689E-05	-3.6083	-0.0017295	-3.5839	-0.0017178	479.305909153714	57.647	0.18761	57.457	57.332	57.52	-0.19018					5	4	2	0	0	0	0.027866	1	6299	6299		44.117	10.601	1	39572			9166	3769	6103	6118	10763	10763					0.12182923719615246
DVTLGCLVPL	10	Unmodified	_DVTLGCLVPL_					0	0	0			REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2718505859375	2	515.286085	1028.55762	-0.67602	-0.00034834	3.57	0.0018396	2.894	0.0014912	515.2877170480191	48.639	0.38144	48.639	48.448	48.83	0					24	10	3	0	0	0	0.03519	1	5002	5002		47.916	1.9636	1	2437100	+		9167	24141	6104	6119	10764	10764					0.044481515111101544
DVTPGGKWY	9	Unmodified	_DVTPGGKWY_					0	0	0			REV__ENST00000577083.1_1_16:4491378-4492529:+|nuORF	REV__ENST00000577083.1_1_16:4491378-4492529:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.75482177734375	2	511.750724	1021.4869	1.0155	0.00051968	-1.533	-0.00078454	-0.51756	-0.00026486	511.74985067481725	37.113	1.1223	37.113	36.474	37.596	0					53	29	3	0	0	0	0.024535	1	3063	3063		18.324	5.3652	1	1304400	+		9168	21384	6105	6120	10765	10765					-0.022988054821894366
DVTVMSLIF	9	Unmodified	_DVTVMSLIF_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN;REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7713623046875	2	512.772811	1023.53107	0.07834	4.0171E-05	-2.6841	-0.0013763	-2.6057	-0.0013362	512.771237283571	19.803	0.58503	19.642	19.331	19.916	-0.1608					28	11	4	0	0	0	0.55828	1	467	467		55.504	7.5886	1	383710	+		9169	21310;33846	6106	6121	10766	10766					0.02024462619795031
DVVAAPCDL	9	Unmodified	_DVVAAPCDL_					0	0	0			REV__ENSG00000175352|ENST00000309166|NRIP3	REV__ENSG00000175352|ENST00000309166|NRIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2642517089844	2	451.718036	901.421518	-0.29919	-0.00013515	-3.4983	-0.0015803	-3.7975	-0.0017154	451.7163222668053	33.404	0.46283	33.203	33.016	33.479	-0.20019					18	11	2	0	0	0	0.024354	1	2352	2352		23.042	6.5693	1	306840	+		9170	26944	6107	6122	10767	10767					-0.033135429995581944
DVVATGKITK	10	Unmodified	_DVVATGKITK_					0	0	0			REV__ENSG00000146282|ENST00000369536|RARS2	REV__ENSG00000146282|ENST00000369536|RARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2511596679688	2	516.308406	1030.60226	-0.084978	-4.3875E-05	-0.48435	-0.00025007	-0.56932	-0.00029395	516.3078451514248	46.51	0.82133	46.414	46.039	46.86	-0.096653					62	22	4	0	0	0	0.03519	1	4518	4518		17.468	0.10304	1	1207300	+		9171	24476	6108	6123	10768	10768					0.08818298648793643
DVVATRANR	9	Unmodified	_DVVATRANR_					0	0	0		CTNNA2|p.A234V|1|0.33|ENSG00000066032|chr2:79874191-79874191|C/T|missense_variant	CTNNA2|p.A234V|1|0.33|ENSG00000066032|chr2:79874191-79874191|C/T|missense_variant	CTNNA2|p.A234V|1|0.33|ENSG00000066032|chr2:79874191-79874191|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2747497558594	2	501.277972	1000.54139	0.095647	4.7946E-05	0.65849	0.00033009	0.75414	0.00037803	501.27821855056857	48.94	0.56222	48.94	48.724	49.287	0					20	15	2	0	0	0	0.023655	1	5014	5014		60.118	0	1	136580			9172	601	6109	6124	10769	10769					0.04114206389215269
DVVDWDEE	8	Unmodified	_DVVDWDEE_					0	0	0		ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENST00000525661.5_1_11:13427176-13461653:-|nuORF;ENST00000525864.5_1_11:13427176-13484721:-|nuORF;ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	ENST00000549824.1_1_12:53143198-53143681:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2972412109375	2	503.703637	1005.39272	-0.61499	-0.00030977	-2.8719	-0.0014466	-3.4869	-0.0017564	503.7021508020193	20.452	1.62	20.229	19.973	21.593	-0.22344					44	32	2	0	0	0	0.027866	1	675	675		62.978	17.026	1	51140			9173	6057	6110	6125	10770	10770					-0.1097598909499311
DVVHRVIFP	9	Unmodified	_DVVHRVIFP_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.76416015625	2	541.311284	1080.60801	-0.56439	-0.00030551	0.24361	0.00013187	-0.32077	-0.00017364	541.3111971175078	49.677	0.41073	49.526	49.407	49.817	-0.1512					18	10	2	0	0	0	0.024386	1	5141	5141		33.516	0	1	181060	+		9174	36443	6111	6126	10771	10771					0.07093441951133173
DVVIDRNL	8	Unmodified	_DVVIDRNL_					0	0	0		BCL2L11-MERTK|1|fusion;BCL2L11-MERTK|3|fusion;BCL2L11-MERTK|2|fusion;ENST00000473065.1_1_2:112754988-112760808:+|nuORF;MERTK|p.E960Rfs*39|1|0.13|ENSG00000153208|chr2:112028738-112028738|G/-|frameshift_variant;ENSG00000153208|ENST00000295408|MERTK	BCL2L11-MERTK|1|fusion	BCL2L11-MERTK|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75628662109375	2	472.263999	942.513445	0.83386	0.0003938	-0.52293	-0.00024696	0.31093	0.00014684	472.26357826481296	43.026	0.58058	43.057	42.722	43.302	0.030827					27	15	3	0	0	0	0.027866	1	3894	3894		49.442	0	1	1278500			9175	182	6112	6127	10772	10772					0.03988883409135724
DVVITIANN	9	Unmodified	_DVVITIANN_					0	0	0		nc|ENSG00000103507|O14874-3|BCKDK;ENSG00000103507|ENST00000219794|BCKDK;BCKDK|p.D306N|1|0.22|ENSG00000103507|chr16:31111370-31111370|G/A|missense_variant	nc|ENSG00000103507|O14874-3|BCKDK	nc|ENSG00000103507|O14874-3|BCKDK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.3025817871094	2	479.763832	957.513111	-0.15005	-7.1987E-05	0.22884	0.00010979	0.078793	3.7802E-05	479.7637940492358	73.26	0.6749	73.069	72.803	73.478	-0.19027					35	16	3	0	0	0	0.024405	1	8595	8595		27.882	3.6795	1	784100			9176	2510	6113	6128	10773	10773					0.03265463689274384
DVVKESPVI	9	Unmodified	_DVVKESPVI_					0	0	0			REV__ENSG00000107863|ENST00000396432|ARHGAP21	REV__ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.28363037109375	2	493.281857	984.549162	0.072333	3.568E-05	0.058353	2.8784E-05	0.13069	6.4465E-05	493.2816551507724	71.191	1.0766	70.934	70.607	71.684	-0.25713					51	25	3	0	0	0	0.12602	2	8318	8306;8318		104.75	8.9314	1	2067100	+		9177	21693	6114	6129	10774;10775	10775					0.056269208661547054
DVVKESPVI	9	Unmodified	_DVVKESPVI_					0	0	0			REV__ENSG00000107863|ENST00000396432|ARHGAP21	REV__ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.28369140625	2	493.281857	984.549162	0.70766	0.00034908	-0.55541	-0.00027397	0.15226	7.5106E-05	493.28133541445175	71.105	1.0431	70.891	70.606	71.65	-0.21425					51	24	3	0	0	0	0.091713	3	8298	8274;8284;8298		113.41	9.3548	1	1980700	+		9178	21693	6114	6129	10776;10777;10778	10778					0.056269208661547054
DVVLILELVS	10	Unmodified	_DVVLILELVS_					0	0	0		ENST00000558482.5_1_15:64221904-64332460:-|nuORF;ENSG00000035664|ENST00000457488|DAPK2;nc|ENSG00000035664|Q9UIK4-2|DAPK2;nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2284545898438	2	550.33409	1098.65363	-0.2448	-0.00013472	1.367	0.00075229	1.1222	0.00061756	550.3346994815961	40.061	0.64545	39.836	39.541	40.187	-0.225					36	16	3	0	0	0	0.03519	1	3384	3384		14.137	7.8245	1	778310			9179	1032	6115	6130	10779	10779					0.10824622622840252
DVVMAVFQW	9	Unmodified	_DVVMAVFQW_					0	0	0			REV__nc|ENSG00000170175|P11230-2|CHRNB1	REV__nc|ENSG00000170175|P11230-2|CHRNB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7880249023438	2	547.770603	1093.52665	-0.9447	-0.00051748	1.4236	0.00077983	0.47894	0.00026235	547.771471201344	30.03	0.59836	29.851	29.442	30.04	-0.17817					36	13	4	0	0	0	0.024506	1	1845	1845		23.042	0	1	376550	+		9180	26439	6116	6131	10780	10780					-0.01637001803101157
DVVMPRKTT	9	Oxidation (M)	_DVVM(Oxidation (M))PRKTT_		DVVM(1)PRKTT		DVVM(49)PRKTT	0	0	1			REV__nc|ENSG00000128656|P15882-3|CHN1	REV__nc|ENSG00000128656|P15882-3|CHN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2872314453125	2	531.784241	1061.55393	0.028414	1.511E-05	-1.558	-0.00082851	-1.5296	-0.0008134	532.2870909917095	71.85	0.96747	71.575	71.188	72.155	-0.2751					37	21	2	0	0	0	0.6504	1	8417	8417		49.442	8.6634	1	3107700	+		9181	23005	6117	6132	10781	10781		687			0.025614817372343168
DVVNKRNR	8	Unmodified	_DVVNKRNR_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3135070800781	2	500.785964	999.557376	0.36548	0.00018303	3.4974	0.0017515	3.8629	0.0019345	500.78778138861696	76.144	0.62131	76.156	75.825	76.446	0.011642					31	15	3	0	0	0	0.027866	1	9341	9341		30.504	5.0535	1	1307100			9182	1023	6118	6133	10782	10782					0.05757912626131656
DVVNQDPNN	9	Unmodified	_DVVNQDPNN_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3038024902344	2	507.727978	1013.4414	-0.36064	-0.00018311	1.911	0.00097027	1.5504	0.00078717	507.7290289731604	26.527	0.25084	26.527	26.365	26.615	0					8	5	2	0	0	0	0.024511	1	1370	1370		25.574	0	1	25701			9183	1144	6119	6134	10783	10783					-0.06478075735242328
DVVPGLIGLI	10	Unmodified	_DVVPGLIGLI_					0	0	0		ENSG00000117408|ENST00000372343|IPO13;IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2877502441406	2	498.310418	994.606283	1.2272	0.00061155	-0.89063	-0.00044381	0.33661	0.00016774	498.30965635759463	59.341	0.56704	59.341	59.07	59.637	0					37	14	3	0	0	0	0.03519	1	6809	6809		30.504	18.297	1	998360			9184	3626	6120	6135	10784	10784					0.1087638814251477
DVVPGLIGLI	10	Unmodified	_DVVPGLIGLI_					0	0	0		ENSG00000117408|ENST00000372343|IPO13;IPO13|p.F913Cfs*6|1|0.29|ENSG00000117408|chr1:43967438-43967445|TTCCCCTC/-|frameshift_variant	ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.310418	994.606283	0.35301	0.00017591	-0.28591	-0.00014247	0.067094	3.3433E-05	498.3101097174825	59.26	0.59133	59.346	59.026	59.618	0.085686	-0.0047671	0.00028766	NaN	30.504	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	972590			9185	3626	6120	6135							0.1087638814251477
DVVRKGKNE	9	Unmodified	_DVVRKGKNE_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF;nc|ENSG00000132554|Q8NE09-2|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8170166015625	2	522.793455	1043.57236	-1.4997	-0.00078405	2.7037	0.0014135	1.204	0.00062945	522.7939865298559	65.063	0.73407	65.063	64.725	65.46	0					56	20	4	0	0	0	0.024367	1	7639	7639		29.17	2.4771	1	1310900			9186	4620	6121	6136	10785	10785					0.05231359703475391
DVVRRSLEP	9	Unmodified	_DVVRRSLEP_					0	0	0		ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7595825195312	2	535.80128	1069.58801	-0.80337	-0.00043045	1.8333	0.00098229	1.0299	0.00055185	535.8022591921792	42.343	0.57693	42.112	41.865	42.442	-0.2303					33	15	3	0	0	0	0.024381	1	3769	3769		21.96	0	1	410040			9187	13694	6122	6137	10786	10786					0.05599646220525756
DVVRRSLEP	9	Unmodified	_DVVRRSLEP_					0	0	0		ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.80128	1069.58801	-0.17757	-9.514E-05	3.2291	0.0017302	3.0515	0.001635	535.8028458777795	42.268	0.7635	42.268	41.987	42.75	0	0.062329	7.2786E-06	NaN	21.96	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2523100			9188	13694	6122	6137							0.05599646220525756
DVVRRSLEP	9	Unmodified	_DVVRRSLEP_					0	0	0		ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.80128	1069.58801	-0.52798	-0.00028289	3.6718	0.0019674	3.1438	0.0016845	535.8030794475279	42.437	0.87464	42.305	42.017	42.892	-0.13219	0.099689	0.00048168	NaN	21.96	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2591700			9189	13694	6122	6137							0.05599646220525756
DVVRRSLEP	9	Unmodified	_DVVRRSLEP_					0	0	0		ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	ENST00000403150.5_1_7:1577170-1577704:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.80128	1069.58801	-0.65223	-0.00034947	3.6999	0.0019824	3.0477	0.001633	535.8030216344862	42.369	1.0926	42.395	42.056	43.148	0.026012	0.18984	0.00051182	NaN	21.96	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2396000			9190	13694	6122	6137							0.05599646220525756
DVVRVARTV	9	Unmodified	_DVVRVARTV_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7646179199219	2	507.806365	1013.59818	-0.491	-0.00024933	-0.30706	-0.00015592	-0.79805	-0.00040526	507.80613804780376	39.066	0.59645	39.066	38.761	39.357	0					29	16	3	0	0	0	0.024374	1	3347	3347		40.778	3.6191	1	325050	+		9191	20777	6123	6138	10787	10787					0.0919225394576415
DVVVINLQNH	10	Unmodified	_DVVVINLQNH_					0	0	0		nc|ENSG00000082512|O00463-2|TRAF5;ENSG00000082512|ENST00000261464|TRAF5	nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-2|TRAF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8141479492188	2	575.814387	1149.61422	-0.54648	-0.00031467	-0.062619	-3.6057E-05	-0.6091	-0.00035073	575.8143293593397	47.823	0.77308	47.547	47.231	48.004	-0.27598					66	20	4	0	0	0	0.96965	1	4669	4669		49.442	5.3247	1	8177800			9192	1735	6124	6139	10788	10788					0.04539915392001603
DVVYEVFGPS	10	Unmodified	_DVVYEVFGPS_					0	0	0			REV__ENSG00000095261|ENST00000210313|PSMD5	REV__ENSG00000095261|ENST00000210313|PSMD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.3013916015625	2	556.268947	1110.52334	-0.11761	-6.5425E-05	-3.8351	-0.0021333	-3.9527	-0.0021988	556.7704013837746	46.716	0.25838	46.447	46.267	46.526	-0.26939					8	6	2	0	0	0	0.03519	1	4513	4513		25.574	0	1	54653	+		9193	20961	6125	6140	10789	10789					-0.02749973376126036
DVWKTILS	8	Unmodified	_DVWKTILS_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2893981933594	2	481.271293	960.528032	-0.2088	-0.00010049	0.15313	7.3698E-05	-0.055667	-2.6791E-05	481.2713223660848	66.019	0.57176	66.049	65.587	66.159	0.030106					24	14	3	0	0	0	0.027866	1	7767	7767		42.396	0	1	329640			9194	4445	6126	6141	10790	10790					0.046189555572937024
DVWLAVDYY	9	Unmodified	_DVWLAVDYY_					0	0	0		XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant;ENSG00000206579|ENST00000327381|XKR4	XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2696533203125	2	572.27149	1142.52843	0.80949	0.00046325	-3.254	-0.0018622	-2.4445	-0.0013989	572.2695586517846	84.933	2.3333	84.774	84.405	86.738	-0.15869					108	54	4	0	0	0	0.55828	1	10302	10302		55.504	7.5447	1	1791900			9195	10475	6127	6142	10791	10791					-0.03713669513535933
DVYDLHTLY	9	Unmodified	_DVYDLHTLY_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7750854492188	2	569.774396	1137.53424	0.82125	0.00046793	-0.47019	-0.0002679	0.35106	0.00020002	569.7741095752219	77.875	1.7748	77.632	77.32	79.095	-0.24232					78	41	5	0	0	0	0.90698	1	9270	9270		31.955	2.7848	1	9792300	+		9196	20705	6128	6143	10792	10792					-0.029025710018458994
DVYISEHVMP	10	Unmodified	_DVYISEHVMP_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	594.8220825195312	2	595.281531	1188.54851	-1.6556	-0.00098554	1.4438	0.00085944	-0.21183	-0.0001261	595.2820839090609	53.085	0.68224	53.085	52.827	53.509	0					44	18	3	0	0	0	0.03519	1	5791	5791		21.96	1.013	1	1059100			9197	9231	6129	6144	10793	10793					-0.03822241845205099
DVYLLNLAL	9	Unmodified	_DVYLLNLAL_					0	0	0		ENSG00000163464|ENST00000295683|CXCR1;ENSG00000180871|ENST00000318507|CXCR2;ENSG00000179934|ENST00000326306|CCR8	ENSG00000163464|ENST00000295683|CXCR1;ENSG00000179934|ENST00000326306|CCR8	ENSG00000163464|ENST00000295683|CXCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.7844848632812	2	517.30005	1032.58555	-0.1882	-9.7357E-05	0.49646	0.00025682	0.30826	0.00015946	517.3001875320176	95.586	1.7866	95.588	94.166	95.953	0.0020752					60	41	2	0	0	0	0.024319	1	11911	11911		47.657	0	1	291420			9198	7080;8943	6130	6145	10794	10794					0.07055797762836846
DVYLLNLAL	9	Unmodified	_DVYLLNLAL_					0	0	0		ENSG00000163464|ENST00000295683|CXCR1;ENSG00000180871|ENST00000318507|CXCR2;ENSG00000179934|ENST00000326306|CCR8	ENSG00000163464|ENST00000295683|CXCR1;ENSG00000179934|ENST00000326306|CCR8	ENSG00000163464|ENST00000295683|CXCR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.30005	1032.58555	-0.47515	-0.00024579	0.71158	0.0003681	0.23643	0.0001223	517.3002424782558	95.627	1.0305	95.627	94.919	95.95	0	0.070792	0.0003436	NaN	39.253	44	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299640			9199	7080;8943	6130	6145							0.07055797762836846
DVYLLNLAL	9	Unmodified	_DVYLLNLAL_					0	0	0		ENSG00000163464|ENST00000295683|CXCR1;ENSG00000180871|ENST00000318507|CXCR2;ENSG00000179934|ENST00000326306|CCR8	ENSG00000163464|ENST00000295683|CXCR1;ENSG00000179934|ENST00000326306|CCR8	ENSG00000163464|ENST00000295683|CXCR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.30005	1032.58555	0.13265	6.862E-05	0.094751	4.9015E-05	0.2274	0.00011764	517.2999865279197	95.45	1.2506	95.453	94.651	95.901	0.0033798	-0.103	-0.00029456	NaN	39.253	49	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295880			9200	7080;8943	6130	6145							0.07055797762836846
DVYLMVGTSI	10	Unmodified	_DVYLMVGTSI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2687377929688	2	549.281	1096.54745	-0.43853	-0.00024087	0.23891	0.00013123	-0.19962	-0.00010965	549.281003102716	64.234	1.144	63.978	63.716	64.86	-0.25563					46	28	3	0	0	0	0.03519	1	7408	7408		25.574	9.9322	1	1208700			9201	4580	6131	6146	10795	10795					0.003035437858898149
DVYMKETEV	9	Unmodified	_DVYMKETEV_					0	0	0			REV__ENSG00000240771|ENST00000286494|ARHGEF25	REV__ENSG00000240771|ENST00000286494|ARHGEF25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.2991943359375	2	557.260265	1112.50598	0.30398	0.0001694	0.35974	0.00020047	0.66372	0.00036987	557.260501671923	67.919	0.49803	67.919	67.719	68.217	0					15	12	2	0	0	0	0.024257	1	8146	8146		77.318	27.876	1	123380	+		9202	28963	6132	6147	10796	10796					-0.04577636973453991
DVYSRLTTPVF	11	Unmodified	_DVYSRLTTPVF_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.7515869140625	3	433.231077	1296.6714	0.79515	0.00034449	4.1787	0.0018104	4.9739	0.0021548	433.23289852094905	19.499	0.3272	19.499	19.317	19.644	0					13	6	3	0	0	0	0.024734	1	405	405		34.087	14.824	1	30939			9203	618	6133	6148	10797	10797					0.034933378776941026
DVYSRLTTPVF	11	Unmodified	_DVYSRLTTPVF_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	433.231077	1296.6714	2.5867	0.0011206	2.3442	0.0010156	4.9309	0.0021362	433.2319503385825	19.645	0.28751	19.711	19.587	19.875	0.066195	0.17665	-0.0016251	NaN	34.087	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17568			9204	618	6133	6148							0.034933378776941026
DVYSRLTTPVF	11	Unmodified	_DVYSRLTTPVF_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	433.231077	1296.6714	0.51271	0.00022212	-0.094735	-4.1042E-05	0.41798	0.00018108	433.22971967286395	19.425	0.24728	19.264	19.084	19.331	-0.16079	-0.27087	-0.0047949	NaN	34.087	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15199			9205	618	6133	6148							0.034933378776941026
DVYTKFDV	8	Unmodified	_DVYTKFDV_					0	0	0			REV__ENSG00000132661|ENST00000254998|NXT1	REV__ENSG00000132661|ENST00000254998|NXT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.305908203125	2	493.745108	985.475663	1.0475	0.00051721	2.8956	0.0014297	3.9432	0.0019469	493.7461358439669	59.027	0.87637	59.027	58.606	59.482	0					29	23	2	0	0	0	0.027866	1	6764	6764		51.193	15.574	1	103700	+		9206	23303	6134	6149	10798	10798					-0.017656275763329177
DVYVPKKVK	9	Unmodified	_DVYVPKKVK_					0	0	0			REV__ENST00000578114.1_1_18:29202843-29202987:-|nuORF	REV__ENST00000578114.1_1_18:29202843-29202987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3265380859375	2	538.329142	1074.64373	-0.12202	-6.5684E-05	-3.9102	-0.002105	-4.0322	-0.0021706	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	0.89441	1	12831	12831		32.812	1.2826	1	22543000	+		9207	35487	6135	6150	10799	10799					0.10939479408125408
DVYVSRLVY	9	Unmodified	_DVYVSRLVY_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3001098632812	2	557.300581	1112.58661	0.53121	0.00029605	-1.232	-0.00068658	-0.70075	-0.00039053	557.2997142401326	68.091	1.0178	68.11	67.781	68.799	0.018913					76	26	4	0	0	0	0.56934	1	8089	8089		54.776	3.2486	1	3473000	+		9208	20459	6136	6151	10800	10800					0.03482012131757983
DWCAREEQQ	9	Unmodified	_DWCAREEQQ_					0	0	0			REV__ENST00000429422.5_2_3:47892501-47892651:-|nuORF	REV__ENST00000429422.5_2_3:47892501-47892651:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.73876953125	2	582.740562	1163.46657	-1.3026	-0.0007591	-2.1802	-0.0012705	-3.4829	-0.0020296	582.7391588821214	66.627	0.62627	66.404	66.066	66.692	-0.22374					53	19	5	0	0	0	0.45795	2	7639	7639;7651		62.107	1.9892	1	6597400	+		9209	32336	6137	6152	10801;10802	10801					-0.10862344204315377
DWCAREEQQ	9	Unmodified	_DWCAREEQQ_					0	0	0			REV__ENST00000429422.5_2_3:47892501-47892651:-|nuORF	REV__ENST00000429422.5_2_3:47892501-47892651:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.7378540039062	2	582.740562	1163.46657	-0.94751	-0.00055215	-2.5132	-0.0014645	-3.4607	-0.0020167	582.7389270539771	66.647	0.74976	66.402	65.891	66.64	-0.24517					52	22	4	0	0	0	0.29158	1	7648	7648		76.774	3.8949	1	6967600	+		9210	32336	6137	6152	10803	10803					-0.10862344204315377
DWFKIPQQS	9	Unmodified	_DWFKIPQQS_					0	0	0			REV__ENSG00000136709|ENST00000322313|WDR33	REV__ENSG00000136709|ENST00000322313|WDR33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	574.8087768554688	2	574.790381	1147.56621	0.42808	0.00024606	0.8992	0.00051685	1.3273	0.00076291	575.2920022600198	17.931	0.24569	17.792	17.655	17.9	-0.1396					7	4	2	0	0	0	0.024511	1	226	226		32.812	0	1	12711	+		9211	23673	6138	6153	10804	10804					-0.001671585280519139
DWIFLVLL	8	Unmodified	_DWIFLVLL_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8034362792969	2	509.802229	1017.5899	0.56391	0.00028748	2.2038	0.0011235	2.7677	0.001411	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	1.0472	1	10300	10300		29.842	0	1	3699900			9212	3390	6139	6154	10805	10805					0.08181306976428004
DWIKGWRNF	9	Unmodified	_DWIKGWRNF_					0	0	0		ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.7781982421875	2	611.311815	1220.60908	-1.5297	-0.00093512	-3.4132	-0.0020865	-4.9429	-0.0030216	611.3098906389704	49.338	0.49943	49.237	48.955	49.454	-0.1008					17	12	3	0	0	0	0.024436	1	4932	4932		47.916	23.713	1	114240			9213	3148	6140	6155	10806	10806					0.007596563200422679
DWLRPLKHL	9	Unmodified	_DWLRPLKHL_					0	0	0			REV__ENST00000591434.1_1_17:43311493-43313776:+|nuORF	REV__ENST00000591434.1_1_17:43311493-43313776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3424682617188	2	589.345658	1176.67676	-1.4778	-0.00087093	-2.7044	-0.0015938	-4.1822	-0.0024647	589.3438908095844	95.449	1.0217	95.449	95.093	96.115	0					57	23	3	0	0	0	0.99229	1	12174	12174		21.96	0.27414	1	679850	+		9214	35723	6141	6156	10807	10807					0.09549106250869954
DWPRDVSL	8	Unmodified	_DWPRDVSL_					0	0	0		nc|ENSG00000135446|P11802-2|CDK4;ENSG00000135446|ENST00000257904|CDK4	nc|ENSG00000135446|P11802-2|CDK4	nc|ENSG00000135446|P11802-2|CDK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	494.248349	986.482145	0.0081286	4.0175E-06	0.025122	1.2416E-05	0.03325	1.6434E-05	494.24821119475024	41.499	0.6392	41.376	41.086	41.725	-0.12317					51	17	4	0	0	0	0.027866	1	3772	3772		63.306	22.734	1	1384800			9215	4895	6142	6157	10808	10808					-0.01163689624968356
DWPRDVSL	8	Unmodified	_DWPRDVSL_					0	0	0		nc|ENSG00000135446|P11802-2|CDK4;ENSG00000135446|ENST00000257904|CDK4	nc|ENSG00000135446|P11802-2|CDK4	nc|ENSG00000135446|P11802-2|CDK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	494.248349	986.482145	-0.23688	-0.00011708	0.5329	0.00026339	0.29602	0.00014631	494.2484727698032	41.985	0.88838	41.853	41.603	42.491	-0.13219					51	25	3	0	0	0	0.027866	1	3772	3772		63.306	22.734	1	765190			9216	4895	6142	6157	10809	10809					-0.01163689624968356
DWRNLHTV	8	Unmodified	_DWRNLHTV_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7674560546875	2	520.76724	1039.51993	-1.0985	-0.00057208	-0.95297	-0.00049627	-2.0515	-0.0010684	520.766710576239	47.412	3.6363	47.471	46.918	50.554	0.059097					219	103	5	0	0	0	0.94517	1	4753	4753		45.952	1.5748	1	75914000			9217	8870	6143	6158	10810	10810					0.0017482136049693509
DWRQPVFYYRR	11	Unmodified	_DWRQPVFYYRR_					0	0	0		ENST00000376946.2_1_10:22209591-22217997:-|nuORF;DNAJC1|p.K550Tfs*3|1|0.08|ENSG00000136770|chr10:21756702-21756703|TT/-|frameshift_variant;ENSG00000136770|ENST00000376980|DNAJC1	ENST00000376946.2_1_10:22209591-22217997:-|nuORF	ENST00000376946.2_1_10:22209591-22217997:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.60791015625	3	529.27227	1584.79498	-0.36468	-0.00019302	2.0067	0.0010621	1.642	0.00086907	529.6076663046762	72.962	1.0369	72.685	72.368	73.405	-0.2769					57	24	4	0	0	0	1.1135	1	8555	8555		6.001	0	1	702120			9218	655	6144	6159	10811	10811					0.025974337686875515
DYAPGINSL	9	Unmodified	_DYAPGINSL_					0	0	0			REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.23492431640625	2	475.234907	948.455261	0.37421	0.00017784	-1.1219	-0.00053315	-0.74765	-0.00035531	475.234312325968	105.62	0.56879	105.5	105.24	105.8	-0.12444					36	16	3	0	0	0	0.77768	1	13147	13147		40.778	7.2626	1	228220	+		9219	23061	6145	6160	10812	10812					-0.021027982361488284
DYAPGINSL	9	Unmodified	_DYAPGINSL_					0	0	0			REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	475.234907	948.455261	0.37421	0.00017784	-1.1219	-0.00053315	-0.74765	-0.00035531	475.234312325968	105.62	0.56879	105.5	105.24	105.8	-0.12444	0.23008	2.8152E-05	NaN	40.778	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228220	+		9220	23061	6145	6160							-0.021027982361488284
DYDQMIKLM	9	Unmodified	_DYDQMIKLM_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.7723388671875	2	578.772485	1155.53042	-0.43628	-0.00025251	0.081121	4.6951E-05	-0.35516	-0.00020556	578.7725592985578	86.184	0.8212	86.139	85.861	86.683	-0.045097					44	18	4	0	0	0	0.70186	1	10806	10806		45.952	1.8352	1	659300	+		9221	27574	6146	6161	10813	10813					-0.041127000915821554
DYDQMIKLM	9	Unmodified	_DYDQMIKLM_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	578.772485	1155.53042	-0.46219	-0.00026751	0.65372	0.00037835	0.19152	0.00011085	578.7726246621869	86.207	0.9433	86.207	85.956	86.899	0	0.090752	0.00066988	NaN	45.952	46	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609510	+		9222	27574	6146	6161							-0.041127000915821554
DYDQMIKLM	9	Unmodified	_DYDQMIKLM_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.772485	1155.53042	0.1078	6.2391E-05	-0.93763	-0.00054267	-0.82983	-0.00048028	578.7722439384221	86.158	0.95747	86.015	85.754	86.712	-0.14217	-0.10066	-0.0011722	NaN	45.952	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450420	+		9223	27574	6146	6161							-0.041127000915821554
DYDQMIKLM	9	Unmodified	_DYDQMIKLM_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	578.772485	1155.53042	-0.14713	-8.5156E-05	0.010216	5.9129E-06	-0.13692	-7.9243E-05	578.7723674859969	86.211	1.0423	86.074	85.745	86.787	-0.13734	-0.042533	-7.5001E-05	NaN	45.952	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579720	+		9224	27574	6146	6161							-0.041127000915821554
DYDRVDARY	9	Unmodified	_DYDRVDARY_					0	0	0			REV__ENSG00000113083|ENST00000231004|LOX;REV__ENST00000513319.5_1_5:121402440-121412860:-|nuORF	REV__ENSG00000113083|ENST00000231004|LOX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.7706298828125	2	586.770177	1171.5258	-0.87102	-0.00051109	2.1749	0.0012762	1.3039	0.00076507	586.7711676570317	73.931	0.45983	73.666	73.368	73.828	-0.26479					27	12	3	0	0	0	1.0019	1	8719	8719		19.997	0	1	1484900	+		9225	22041;34151	6147	6162	10814	10814					-0.05310124918469228
DYDYCMVQ	8	Unmodified	_DYDYCMVQ_					0	0	0			REV__CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant	REV__CPNE2|p.C304Sfs*8|1|0.11|ENSG00000140848|chr16:57123455-57123458|CTGC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7046508789062	2	518.691161	1035.36777	-0.20843	-0.00010811	4.0918	0.0021224	3.8834	0.0020143	518.6931767539966	34.328	0.98227	34.104	33.762	34.744	-0.22412					59	24	4	0	0	0	0.027866	1	2538	2538		38.806	8.3025	1	2096000	+		9226	19612	6148	6163	10815	10815					-0.1485008349357031
DYGSNYLY	8	Unmodified	_DYGSNYLY_					0	0	0		ENSG00000126550|ENST00000246896|HTN1	ENSG00000126550|ENST00000246896|HTN1	ENSG00000126550|ENST00000246896|HTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.70855712890625	2	497.711265	993.407977	-0.15324	-7.6269E-05	-3.2786	-0.0016318	-3.4319	-0.0017081	497.70952561711016	34.347	0.77811	34.123	33.762	34.54	-0.22412					35	19	2	0	0	0	0.50239	1	2528	2528		85.359	8.5853	1	2012800			9227	4205	6149	6164	10816	10816					-0.08899077507146558
DYIIPKNTL	9	Unmodified	_DYIIPKNTL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.802734375	2	538.802957	1075.59136	-1.1978	-0.00064539	0.45553	0.00024544	-0.74228	-0.00039994	538.8031436333358	93.829	2.7283	93.834	93.391	96.119	0.0059814					181	64	5	0	0	0	0.15029	1	11905	11905		99.375	3.5598	1	13029000			9228	3081	6150	6165	10817	10817					0.05658896274530889
DYILMKSLL	9	Unmodified	_DYILMKSLL_					0	0	0			REV__ENSG00000170312|ENST00000395284|CDK1	REV__ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3088989257812	2	548.309561	1094.60457	-0.56933	-0.00031217	-2.9859	-0.0016372	-3.5553	-0.0019494	548.307774593908	101.61	1.8886	101.61	100.99	102.88	0					101	43	4	0	0	0	0.32811	1	13052	13052		71.877	0.58177	1	2686600	+		9229	26455	6151	6166	10818	10818					0.06105011062277299
DYILMKSLL	9	Unmodified	_DYILMKSLL_					0	0	0			REV__ENSG00000170312|ENST00000395284|CDK1	REV__ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3095703125	2	548.309561	1094.60457	-0.63396	-0.00034761	-2.7965	-0.0015333	-3.4304	-0.0018809	548.30787158307	101.57	1.6212	101.58	101.09	102.71	0.0090332					100	37	4	0	0	0	0.14024	1	13011	13011		101.6	10.824	1	2768400	+		9230	26455	6151	6166	10819	10819					0.06105011062277299
DYILMKSLL	9	Unmodified	_DYILMKSLL_					0	0	0			REV__ENSG00000170312|ENST00000395284|CDK1	REV__ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3084716796875	2	548.309561	1094.60457	-0.34826	-0.00019095	-3.0287	-0.0016607	-3.377	-0.0018516	548.30777302576	101.66	1.8008	101.65	101.06	102.86	-0.0054474					102	41	4	0	0	0	0.091713	1	12920	12920		113.41	10.638	1	3111100	+		9231	26455	6151	6166	10820	10820					0.06105011062277299
DYKCVEHGIT	10	Unmodified	_DYKCVEHGIT_					0	0	0		nc|ENSG00000197702|Q9NVD7-2|PARVA;ENST00000530755.5_1_11:12399134-12499642:+|nuORF	nc|ENSG00000197702|Q9NVD7-2|PARVA	nc|ENSG00000197702|Q9NVD7-2|PARVA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.2858276367188	2	582.771331	1163.52811	0.45868	0.00026731	-3.2211	-0.0018772	-2.7624	-0.0016099	582.7687632001921	83.375	1.3251	83.164	82.53	83.856	-0.21159					32	20	2	0	0	0	0.03519	1	10132	10132		47.657	1.6851	1	127040			9232	16242	6152	6167	10821	10821					-0.047114125050256916
DYKDGIPTL	9	Unmodified	_DYKDGIPTL_					0	0	0			REV__ENST00000421856.1_1_X:63917840-63918137:-|nuORF	REV__ENST00000421856.1_1_X:63917840-63918137:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.26171875	2	511.263665	1020.51278	0.28326	0.00014482	-1.375	-0.00070299	-1.0917	-0.00055817	511.2635691605744	83.938	1.1092	83.8	83.255	84.365	-0.13789					52	25	3	0	0	0	0.20967	1	10137	10137		87.754	10.98	1	685890	+		9233	25727	6153	6168	10822	10822					0.003340439694284214
DYLGIPVEG	9	Unmodified	_DYLGIPVEG_					0	0	0		nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7493591308594	2	481.745108	961.475663	-0.3504	-0.0001688	0.94552	0.0004555	0.59513	0.0002867	481.74502281043544	32.999	1.4171	32.999	32.07	33.487	0					58	37	2	0	0	0	0.024205	1	2345	2345		53.351	7.3995	1	145980			9234	18223	6154	6169	10823	10823					-0.006616275763235535
DYLSSYSSF	9	Unmodified	_DYLSSYSSF_					0	0	0			REV__ENSG00000066629|ENST00000262233|EML1	REV__ENSG00000066629|ENST00000262233|EML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2431640625	2	534.729655	1067.44476	-0.64808	-0.00034655	1.0538	0.00056348	0.40569	0.00021693	534.7304469808695	56.297	0.24376	56.14	56.011	56.255	-0.15656					6	5	2	0	0	0	0.024457	1	6095	6095		37.159	7.3176	1	48380	+		9235	20340	6155	6170	10824	10824					-0.08626825681221817
DYLTSKIKSR	10	Unmodified	_DYLTSKIKSR_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000567842.5_1_16:28138076-28157497:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2184143066406	3	404.231189	1209.67174	1.0368	0.00041911	-1.7366	-0.00070199	-0.69978	-0.00028287	404.56448607137463	57.355	0.17957	57.153	57.03	57.21	-0.20209					6	4	2	0	0	0	0.03519	1	6262	6262		24.232	8.8987	1	57682			9236	7910	6156	6171	10825	10825					0.07528757597560798
DYQMLKRRLV	10	Unmodified	_DYQMLKRRLV_					0	0	0			REV__CON__Q0VCM5	REV__CON__Q0VCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.5870056152344	3	441.251818	1320.73363	1.2654	0.00055834	1.9936	0.00087967	3.2589	0.001438	441.2525954706037	110.33	0.52612	110.33	110.08	110.61	0					37	13	3	0	0	0	1.1165	1	14044	14044		19.263	1.7947	1	327170	+	+	9237	19566	6157	6172	10826	10826					0.08608785745059322
DYQSQEPLDL	10	Unmodified	_DYQSQEPLDL_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.18780517578125	3	403.187426	1206.54045	0.99077	0.00039947	0.39163	0.0001579	1.3824	0.00055737	403.18754893987364	36.559	0.67849	36.343	36.05	36.729	-0.21661					41	16	3	0	0	0	1.0275	1	2868	2868		42.338	2.2799	1	2443200			9238	18094	6158	6173	10827	10827					-0.05456097560977469
DYSKCSLLD	9	Unmodified	_DYSKCSLLD_					0	0	0		ENST00000579249.1_1_17:62145505-62149428:-|nuORF	ENST00000579249.1_1_17:62145505-62149428:-|nuORF	ENST00000579249.1_1_17:62145505-62149428:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2897338867188	2	522.239332	1042.46411	-0.13235	-6.9116E-05	-2.5267	-0.0013195	-2.659	-0.0013886	522.2376956133428	63.534	1.3402	63.283	62.683	64.023	-0.25141					72	35	4	0	0	0	0.024319	1	7321	7321		56.721	12.604	1	2210800			9239	17139	6159	6174	10828	10828					-0.055421926619601436
DYSKDSVLLKT	11	Unmodified	_DYSKDSVLLKT_					0	0	0			REV__nc|ENSG00000173124|Q6P461-2|ACSM6	REV__nc|ENSG00000173124|Q6P461-2|ACSM6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.5623474121094	3	423.562604	1267.66598	1.4103	0.00059734	-2.5318	-0.0010724	-1.1215	-0.00047502	423.56156529534127	17.487	2.1789	17.333	17.159	19.338	-0.15403					69	43	4	0	0	0	1.053	1	197	197		24.276	3.4388	1	1152400	+		9240	26741	6160	6175	10829	10829					0.04285614295235973
DYTPFNLGE	9	Unmodified	_DYTPFNLGE_					0	0	0			REV__nc|ENSG00000118729|O14958-2|CASQ2	REV__nc|ENSG00000118729|O14958-2|CASQ2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2384033203125	2	528.237647	1054.46074	-0.020921	-1.1051E-05	3.1222	0.0016492	3.1012	0.0016382	528.2391109941838	68.01	3.4665	67.776	66.732	70.199	-0.23376					176	84	3	0	0	0	0.42604	1	7816	7816		64.207	9.431	1	2233000	+		9241	22422	6161	6176	10830	10830					-0.06431119444323485
DYVLNCSI	8	Unmodified	_DYVLNCSI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7796630859375	2	463.718036	925.421518	0.22461	0.00010416	-1.189	-0.00055134	-0.96434	-0.00044718	463.71747339473245	68.168	0.30907	67.88	67.748	68.057	-0.28834					12	7	2	0	0	0	0.027866	1	8136	8136		37.159	18.835	1	62562			9242	991	6162	6177	10831	10831					-0.044175429995334525
DYVLSRTANSI	11	Unmodified	_DYVLSRTANSI_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.5502014160156	3	413.550698	1237.63027	-0.11815	-4.8862E-05	-0.55344	-0.00022888	-0.6716	-0.00027774	413.55049374276626	29.569	1.5636	29.572	29.055	30.618	0.0031357					57	38	2	0	0	0	0.96309	1	1803	1803		45.022	8.7046	1	5491400	+		9243	25880	6163	6178	10832	10832					0.020955768382464157
DYVPKSWGL	9	Unmodified	_DYVPKSWGL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7738647460938	2	532.7742	1063.53385	-0.53501	-0.00028504	-1.333	-0.00071021	-1.8681	-0.00099525	532.7740764023328	97.884	0.94305	97.884	97.415	98.358	0					72	21	5	0	0	0	0.20967	1	12480	12480		87.754	2.8388	1	411130	+		9244	25017	6164	6179	10833	10833					0.004620540689757036
DYVQIPYEV	9	Unmodified	_DYVQIPYEV_					0	0	0		SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.2766723632812	2	563.276772	1124.53899	-0.67038	-0.00037761	0.006167	3.4737E-06	-0.66421	-0.00037413	563.2767772660837	81.732	3.2047	81.732	81.299	84.504	0					218	75	4	0	0	0	0.17822	3	10185	10185;10221;10259		93.195	4.0924	1	19333000			9245	8967	6165	6180	10834;10835;10836	10834					-0.01829686859082358
DYVQIPYEV	9	Unmodified	_DYVQIPYEV_					0	0	0		SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.276611328125	2	563.276772	1124.53899	-0.073824	-4.1583E-05	-0.5296	-0.00029831	-0.60342	-0.00033989	563.2764708422711	81.861	3.0713	81.73	81.298	84.369	-0.13075					222	72	4	0	0	0	0.17822	4	10167	10167;10180;10217;10254		93.195	8.1414	1	21913000			9246	8967	6165	6180	10837;10838;10839;10840	10837					-0.01829686859082358
DYVQIPYEV	9	Unmodified	_DYVQIPYEV_					0	0	0		SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.276611328125	2	563.276772	1124.53899	-0.90856	-0.00051177	0.22095	0.00012445	-0.68761	-0.00038731	563.2768894849044	81.695	3.3298	81.721	81.25	84.579	0.025711					226	78	4	0	0	0	0.15366	3	10109	10109;10121;10145		98.629	8.2596	1	23997000			9247	8967	6165	6180	10841;10842;10843	10841					-0.01829686859082358
DYVQIPYEV	9	Unmodified	_DYVQIPYEV_					0	0	0		SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.2769775390625	2	563.276772	1124.53899	0.36435	0.00020523	-0.78413	-0.00044168	-0.41978	-0.00023645	563.2763621872085	81.853	2.3968	81.624	81.022	83.418	-0.2289					176	55	5	0	0	0	0.17822	3	9835	9835;9847;9860		93.195	10.919	1	5689700			9248	8967	6165	6180	10844;10845;10846	10844					-0.01829686859082358
DYVQIPYEV	9	Unmodified	_DYVQIPYEV_					0	0	0		SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2767333984375	2	563.276772	1124.53899	-0.78978	-0.00044486	0.30193	0.00017007	-0.48785	-0.00027479	563.2769492546245	81.784	2.2277	81.642	81.151	83.379	-0.14248					171	51	5	0	0	0	0.23085	1	9816	9816		84.916	5.2029	1	6248000			9249	8967	6165	6180	10847	10847					-0.01829686859082358
DYVRQLLL	8	Unmodified	_DYVRQLLL_					0	0	0		ENST00000464576.1_1_2:131128085-131128235:+|nuORF;ENST00000490812.5_1_2:131127701-131128235:+|nuORF;nc|ENSG00000072135|Q99952-2|PTPN18;ENSG00000072135|ENST00000175756|PTPN18	ENST00000464576.1_1_2:131128085-131128235:+|nuORF	ENST00000464576.1_1_2:131128085-131128235:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.78729248046875	2	510.297842	1018.58113	-2.1328	-0.0010884	1.1465	0.00058507	-0.98625	-0.00050328	510.29803620779177	60.353	0.63585	60.432	60.203	60.839	0.078884					46	16	4	0	0	0	0.027866	1	6825	6825		53.351	6.585	1	3039600			9250	1469	6166	6181	10848	10848					0.07258333339962064
DYVRYKPVII	10	Unmodified	_DYVRYKPVII_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3695068359375	2	633.366256	1264.71796	0.56004	0.00035471	4.0044	0.0025362	4.5644	0.0028909	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	1.0002	1	12343	12343		45.972	5.9141	1	8480900			9251	4950	6167	6182	10849	10849					0.09618822499669477
DYYDLFPKI	9	Unmodified	_DYYDLFPKI_					0	0	0			REV__ENSG00000136827|ENST00000351698|TOR1A	REV__ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	587.2952880859375	2	587.294965	1172.57538	-0.074375	-4.368E-05	0.47031	0.00027621	0.39593	0.00023253	587.2952118838654	73.974	2.1507	73.974	73.655	75.806	0					175	53	6	0	0	0	0.70186	1	9076	9076		45.952	15.634	1	52037000	+		9252	23686	6168	6183	10850	10850					-0.00400809962366111
EAAELRCAL	9	Unmodified	_EAAELRCAL_					0	0	0			REV__ENST00000590083.5_1_19:1229180-1230152:-|nuORF	REV__ENST00000590083.5_1_19:1229180-1230152:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.2497253417969	2	488.250034	974.485516	-0.3205	-0.00015648	0.22011	0.00010747	-0.10039	-4.9016E-05	488.25006176452007	33.544	0.81044	33.344	33.056	33.866	-0.20019					55	20	4	0	0	0	0.16468	1	2392	2392		96.19	5.4138	1	5289300	+		9253	35693	6169	6184	10851	10851					-0.0027476284260501416
EAAFFANLKL	10	Unmodified	_EAAFFANLKL_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.7945556640625	2	562.310949	1122.60735	-0.63891	-0.00035927	-2.3312	-0.0013108	-2.9701	-0.0016701	562.3098593944549	52.147	0.44898	52.028	51.833	52.282	-0.11875					14	11	2	0	0	0	0.03519	1	5425	5425		25.574	0	1	205550			9254	9450	6170	6185	10852	10852					0.05094602511417179
EAAGAPDLREL	11	Unmodified	_EAAGAPDLREL_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.298583984375	2	571.296027	1140.5775	-0.061426	-3.5093E-05	3.7301	0.002131	3.6687	0.0020959	571.2981835137269	72.505	0.65172	72.514	72.25	72.902	0.0097733					37	15	3	0	0	0	0.64701	1	8765	8765		66.962	4.8545	1	702870	+		9255	21546	6171	6186	10853	10853					0.012836187754373896
EAAGPVLPLL	10	Unmodified	_EAAGPVLPLL_					0	0	0		ENST00000542579.5_1_10:11377172-11377550:+|nuORF	ENST00000542579.5_1_10:11377172-11377550:+|nuORF	ENST00000542579.5_1_10:11377172-11377550:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27728271484375	2	490.294768	978.574983	-0.15679	-7.6873E-05	-0.89759	-0.00044008	-1.0544	-0.00051696	490.2941476395351	64.557	0.56096	64.557	64.275	64.836	0					31	14	3	0	0	0	0.03519	1	7604	7604		53.351	20.539	1	671340			9256	16461	6172	6187	10854	10854					0.084838151084341
EAAGRHKTVP	10	Unmodified	_EAAGRHKTVP_					0	0	0			REV__ENST00000571666.1_1_16:21273345-21289551:-|nuORF	REV__ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2590942382812	2	533.293622	1064.57269	-1.0086	-0.0005379	3.7184	0.001983	2.7098	0.0014451	533.2954450432934	66.442	0.49856	66.219	65.905	66.403	-0.22374					18	12	2	0	0	0	0.03519	1	7631	7631		52.937	0	1	173580	+		9257	35408	6173	6188	10855	10855					0.04298779423334054
EAAGSPARKVK	11	Unmodified	_EAAGSPARKVK_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.7959594726562	2	557.32238	1112.63021	-0.8804	-0.00049067	0.029366	1.6367E-05	-0.85103	-0.0004743	557.3222380019903	39.05	0.49742	38.951	38.737	39.234	-0.098751					22	13	2	0	0	0	0.024736	1	3352	3352		22.58	6.9378	1	209180			9258	1964	6174	6189	10856	10856					0.07839621628886562
EAAGTMFPKV	10	Unmodified	_EAAGTMFPKV_					0	0	0			REV__TPT1-KRT17|1|fusion;REV__ENSG00000133112|ENST00000530705|TPT1	REV__TPT1-KRT17|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7694702148438	2	525.76806	1049.52157	-0.33165	-0.00017437	3.9737	0.0020893	3.6421	0.0019149	525.7695742420977	34.074	1.1849	33.867	33.627	34.812	-0.20696					73	29	4	0	0	0	0.83673	1	2482	2482		58.23	12.258	1	9132600	+	+	9259	37724;23352	6175	6190	10857	10857					-0.0012130566574342083
EAAHHHGRCQG	11	Unmodified	_EAAHHHGRCQG_					0	0	0			REV__ENST00000564460.2_1_16:952344-953654:-|nuORF	REV__ENST00000564460.2_1_16:952344-953654:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	601.8323364257812	2	601.765237	1201.51592	-0.071061	-4.2762E-05	-0.65829	-0.00039614	-0.72935	-0.0004389	601.7645263409789	72.297	0.79441	72.033	71.758	72.553	-0.26479					41	18	4	0	0	0	0.024774	1	8529	8529		12.207	0	1	432240	+		9260	35248	6176	6191	10858	10858					-0.07677591404853956
EAAIFLDHP	9	Unmodified	_EAAIFLDHP_					0	0	0			REV__ENST00000372343.7_1_1:44412765-44412906:+|nuORF	REV__ENST00000372343.7_1_1:44412765-44412906:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3092956542969	2	506.758549	1011.50255	-1.074	-0.00054424	-0.78034	-0.00039544	-1.8543	-0.00093968	506.7568248148481	43.665	0.54126	43.445	43.246	43.788	-0.21938					33	13	4	0	0	0	0.024323	1	4049	4049		44.117	7.67	1	528150	+		9261	31199	6177	6192	10859	10859					-0.0027451896515913177
EAAIRNAHS	9	Unmodified	_EAAIRNAHS_					0	0	0			REV__MYH6|p.M1637I|1|0.12|ENSG00000197616|chr14:23386363-23386363|C/T|missense_variant	REV__MYH6|p.M1637I|1|0.12|ENSG00000197616|chr14:23386363-23386363|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2952880859375	2	484.749047	967.483542	1.962	0.00095107	-2.5748	-0.0012481	-0.61283	-0.00029707	484.74779236400775	24.792	0.3941	24.611	24.461	24.855	-0.18089					14	8	2	0	0	0	0.024466	1	1120	1120		39.253	7.298	1	73129	+		9262	36409	6178	6193	10860	10860					-0.0015005553619857892
EAAKLRIQ	8	Unmodified	_EAAKLRIQ_					0	0	0			REV__ATAD3A|p.R534Efs*5|1|0.18|ENSG00000197785|chr1:1527811-1527812|-/G|frameshift_variant	REV__ATAD3A|p.R534Efs*5|1|0.18|ENSG00000197785|chr1:1527811-1527812|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2377624511719	2	464.782359	927.550165	-1.3319	-0.00061904	3.4924	0.0016232	2.1605	0.0010041	464.78289203942154	30.364	0.53878	30.364	30.137	30.675	0					16	12	2	0	0	0	0.027866	1	1925	1925		31.955	5.1588	1	65752	+		9263	19180	6179	6194	10861	10861					0.08349180025709302
EAALEKQAL	9	Unmodified	_EAALEKQAL_					0	0	0		ENST00000466256.6_1_1:17257024-17267483:+|nuORF;CROCC|p.L1854Rfs*2|1|0.12|ENSG00000058453|chr1:16970362-16970375|TGGCTCAGCTGGAA/-|frameshift_variant;ENSG00000058453|ENST00000375541|CROCC	ENST00000466256.6_1_1:17257024-17267483:+|nuORF	ENST00000466256.6_1_1:17257024-17267483:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7882995605469	2	486.771657	971.528761	0.00042981	2.0922E-07	-0.64326	-0.00031312	-0.64283	-0.00031291	486.7713045679506	46.64	0.90826	46.64	46.273	47.181	0					51	24	3	0	0	0	0.024	1	4695	4695		65.803	2.4969	1	2377500			9264	589	6180	6195	10862	10862					0.04185750206340799
EAALKWDL	8	Unmodified	_EAALKWDL_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7781677246094	2	473.255643	944.496732	-0.58555	-0.00027712	-2.9211	-0.0013824	-3.5067	-0.0016595	473.2538319295529	24.305	0.84503	24.257	23.913	24.758	-0.047148					44	18	3	0	0	0	0.027866	1	1045	1045		60.972	0	1	838630	+		9265	27352	6181	6196	10863	10863					0.02226382523178927
EAAPHPCLLD	10	Unmodified	_EAAPHPCLLD_					0	0	0			REV__ENSG00000140396|ENST00000452400|NCOA2	REV__ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7902221679688	2	533.255317	1064.49608	-0.76295	-0.00040685	0.66644	0.00035538	-0.096512	-5.1465E-05	533.2555970361961	56.472	2.1407	56.472	55.5	57.641	0					146	59	3	0	0	0	0.03519	1	6269	6269		84.916	21.609	1	1671000	+		9266	24013	6182	6197	10864	10864					-0.033587801881594714
EAAPVLLKKV	10	Unmodified	_EAAPVLLKKV_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-5|QKI	REV__nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7946166992188	2	534.344792	1066.67503	-1.7249	-0.0009217	0.95754	0.00051166	-0.76738	-0.00041004	534.3452514166844	91.058	0.53723	91.058	90.804	91.341	0					23	12	3	0	0	0	0.03519	1	11548	11548		32.812	0	1	388160	+		9267	22009	6183	6198	10865	10865					0.1443605244223818
EAAQKNMAL	9	Unmodified	_EAAQKNMAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2500915527344	2	488.250034	974.485516	-0.37664	-0.00018389	0.35368	0.00017268	-0.02296	-1.121E-05	488.2501119583659	33.604	0.91514	33.373	33.075	33.99	-0.23107					68	22	5	0	0	0	0.20967	1	2417	2417		87.754	16.459	1	4494000			9268	2185	6184	6199	10866	10866					-0.0027476284260501416
EAAQKNMAL	9	Unmodified	_EAAQKNMAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.2498474121094	2	488.250034	974.485516	-0.3205	-0.00015648	0.22011	0.00010747	-0.10039	-4.9016E-05	488.25006176452007	33.544	0.81044	33.344	33.056	33.866	-0.20019					55	20	4	0	0	0	0.18915	2	2404	2383;2404		90.777	11.064	1	5289300			9269	2185	6184	6199	10867;10868	10868					-0.0027476284260501416
EAAQKNMAL	9	Unmodified	_EAAQKNMAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.250244140625	2	488.250034	974.485516	-0.80813	-0.00039457	0.73064	0.00035674	-0.07749	-3.7834E-05	488.25028251541283	33.504	0.90652	33.338	33.038	33.944	-0.16565					64	22	5	0	0	0	0.082191	3	2367	2367;2379;2393		116.9	8.8161	1	4501200			9270	2185	6184	6199	10869;10870;10871	10869					-0.0027476284260501416
EAAQRQAHG	9	Unmodified	_EAAQRQAHG_					0	0	0		ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7795104980469	2	484.238847	966.463141	-0.56398	-0.0002731	-1.8106	-0.00087678	-2.3746	-0.0011499	484.2366452200267	38.812	0.47292	38.812	38.639	39.112	0					13	12	2	0	0	0	0.024381	1	3267	3267		29.15	0	1	134620			9271	7532	6185	6200	10872	10872					-0.0214322619599443
EAARDGQVW	9	Unmodified	_EAARDGQVW_					0	0	0		ENST00000409657.5_2_3:123675266-123680045:-|nuORF;ENST00000409697.7_1_3:123675607-123680045:-|nuORF	ENST00000409657.5_2_3:123675266-123680045:-|nuORF	ENST00000409657.5_2_3:123675266-123680045:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2970581054688	2	516.24888	1030.48321	0.93268	0.00048149	-0.72787	-0.00037576	0.20481	0.00010573	516.2484542453234	36.902	0.82844	36.693	36.364	37.192	-0.2092					50	20	3	0	0	0	0.023007	1	2892	2892		87.754	10.908	1	887570			9272	13786	6186	6201	10873	10873					-0.030814752560445413
EAARPFDI	8	Unmodified	_EAARPFDI_					0	0	0			REV__ENSG00000121741|ENST00000610343|ZMYM2	REV__ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2636413574219	2	459.737617	917.460681	-0.047963	-2.205E-05	1.2044	0.00055369	1.1564	0.00053164	459.7377581304673	42.022	0.36335	41.899	41.752	42.116	-0.12299					11	9	2	0	0	0	0.027866	1	3754	3754		37.159	0	1	103900	+		9273	22603	6187	6202	10874	10874					-0.0013507465366728866
EAARSLINDY	10	Unmodified	_EAARSLINDY_					0	0	0		CON__A2I7N1;CON__Q9TTE1	CON__A2I7N1;CON__Q9TTE1	CON__A2I7N1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2852783203125	2	576.288202	1150.56185	-1.1388	-0.00065628	-0.51318	-0.00029574	-1.652	-0.00095202	576.287729435565	29.191	0.39016	28.945	28.709	29.099	-0.24524					14	8	2	0	0	0	0.03519	1	1752	1752		42.864	7.246	1	124250		+	9274	478;575	6188	6203	10875	10875					-0.007406677416156526
EAASQRLNSL	10	Unmodified	_EAASQRLNSL_					0	0	0			REV__sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	REV__sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7902221679688	2	544.78837	1087.56219	-0.12336	-6.7207E-05	2.9703	0.0016182	2.847	0.001551	544.7899729249108	49.267	0.76307	49.267	49.005	49.768	0					60	20	6	0	0	0	0.34816	1	5096	5096		104.01	2.761	1	6077600	+		9275	37548	6189	6204	10876	10876					0.021907519782416784
EAASRKRR	8	Unmodified	_EAASRKRR_					0	0	0			REV__chr11:65894121-65900241|239|10.65|0.6|4.16|-|1|FOSL1,FOSL1|1	REV__chr11:65894121-65900241|239|10.65|0.6|4.16|-|1|FOSL1,FOSL1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2497253417969	2	487.286131	972.55771	-0.20654	-0.00010065	3.2316	0.0015747	3.0251	0.0014741	487.2874633889114	33.35	1.0949	33.15	32.771	33.866	-0.20019					76	27	5	0	0	0	0.027866	1	2392	2392		63.306	0	1	1057400	+		9276	19353	6190	6205	10877	10877					0.07033332345997678
EAATGSPRGGT	11	Unmodified	_EAATGSPRGGT_					0	0	0		ENST00000345057.8_1_16:67190567-67193991:-|nuORF	ENST00000345057.8_1_16:67190567-67193991:-|nuORF	ENST00000345057.8_1_16:67190567-67193991:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.8107604980469	2	502.243795	1002.47304	-0.029515	-1.4824E-05	0.93089	0.00046754	0.90138	0.00045271	502.2446978330501	69.543	0.20548	69.543	69.383	69.588	0					5	4	2	0	0	0	0.024731	1	8368	8368		21.686	8.874	1	16729			9277	12559	6191	6206	10878	10878					-0.028100829812615302
EAATVGVVSV	10	Unmodified	_EAATVGVVSV_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2721252441406	2	466.258382	930.502212	0.52922	0.00024675	-0.28527	-0.00013301	0.24395	0.00011375	466.2581739377498	36.03	1.1208	35.832	35.575	36.696	-0.19829					53	29	3	0	0	0	0.03519	1	2821	2821		56.721	21.103	1	1414500	+		9278	26262	6192	6207	10879	10879					0.03418061315016985
EAAVAELQAAL	11	Unmodified	_EAAVAELQAAL_					0	0	0		ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	ENSG00000123689|ENST00000367029|G0S2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7980346679688	2	543.295496	1084.57644	-0.39992	-0.00021728	2.3021	0.0012507	1.9022	0.0010335	543.2963735223976	71.749	0.43599	71.543	71.344	71.78	-0.20613					14	10	2	0	0	0	0.024818	1	8399	8399		68.626	20.968	1	437130			9279	3996	6193	6208	10880	10880					0.03753404406529626
EAAYHLII	8	Unmodified	_EAAYHLII_					0	0	0		nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50304918-50319471:-|nuORF	nc|ENSG00000165525|O60524-3|NEMF	nc|ENSG00000165525|O60524-3|NEMF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2922668457031	2	465.258185	928.501818	-0.37957	-0.0001766	3.7334	0.001737	3.3538	0.0015604	465.25971273906924	61.051	0.2254	61.051	60.845	61.07	0					6	5	2	0	0	0	0.027866	1	7034	7034		35.201	1.6851	1	44732			9280	7426	6194	6209	10881	10881					0.03470686385821864
EAAYLLDDL	9	Unmodified	_EAAYLLDDL_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7843933105469	2	511.755672	1021.49679	0.42619	0.00021811	1.8031	0.00092276	2.2293	0.0011409	511.7561537881622	59.665	0.80183	59.465	59.136	59.938	-0.20016					28	21	2	0	0	0	0.024381	1	6767	6767		45.952	5.3793	1	429110	+		9281	34774	6195	6210	10882	10882					-0.01309662267465228
EACLQSRSV	9	Unmodified	_EACLQSRSV_					0	0	0			REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2956848144531	2	496.745116	991.475679	-0.29935	-0.0001487	-1.5867	-0.0007882	-1.8861	-0.0009369	496.744766664612	41.563	1.1627	41.335	40.847	42.01	-0.2278					49	30	3	0	0	0	0.02435	1	3637	3637		34.173	0	1	179830	+		9282	32548	6196	6211	10883	10883					-0.020399508479727047
EACPFVIDI	9	Unmodified	_EACPFVIDI_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.2226867675781	2	503.749336	1005.48412	0.032989	1.6618E-05	2.1971	0.0011068	2.2301	0.0011234	503.75007446064876	46.807	0.35763	46.71	46.539	46.897	-0.096653					14	9	2	0	0	0	0.024021	1	4538	4538		49.442	23.991	1	126000			9283	10290	6197	6212	10884	10884					-0.01840396931356736
EACPFVIDI	9	Unmodified	_EACPFVIDI_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2229309082031	2	503.749336	1005.48412	0.038856	1.9574E-05	2.3258	0.0011716	2.3647	0.0011912	503.7498721053919	47.161	0.32305	46.891	46.764	47.087	-0.26939					12	8	2	0	0	0	0.024263	1	4572	4572		51.335	15.717	1	93749			9284	10290	6197	6212	10885	10885					-0.01840396931356736
EACPFVIDI	9	Unmodified	_EACPFVIDI_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;ENST00000461039.1_1_1:64021028-64034235:+|nuORF	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.22271728515625	2	503.749336	1005.48412	-0.61468	-0.00030965	2.9215	0.0014717	2.3068	0.0011621	503.7504873255263	46.956	0.27702	46.762	46.609	46.886	-0.19387					13	7	2	0	0	0	0.024323	1	4537	4537		35.618	2.8059	1	146920			9285	10290	6197	6212	10886	10886					-0.01840396931356736
EACPHQLL	8	Unmodified	_EACPHQLL_					0	0	0		ENSG00000131126|ENST00000598265|TEX101;nc|ENSG00000131126|Q9BY14-2|TEX101	ENSG00000131126|ENST00000598265|TEX101	ENSG00000131126|ENST00000598265|TEX101	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.74273681640625	2	455.726195	909.437837	-0.38021	-0.00017327	2.7805	0.0012671	2.4003	0.0010939	455.7288906158623	43.414	0.22111	43.275	43.137	43.358	-0.13929					6	5	2	0	0	0	0.027866	1	4042	4042		30.504	23.31	1	24589			9286	4498	6198	6213	10887	10887					-0.020504170427898316
EACSYFPL	8	Unmodified	_EACSYFPL_					0	0	0		ENST00000471957.1_1_9:140482023-140483371:-|nuORF	ENST00000471957.1_1_9:140482023-140483371:-|nuORF	ENST00000471957.1_1_9:140482023-140483371:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	465.207304	928.400055	-0.53704	-0.00024984	-0.45221	-0.00021037	-0.98925	-0.00046021	465.206909465852	33.912	0.19461	33.912	33.777	33.972	0					6	4	2	0	0	0	0.027866	1	2480	2480		28.254	17.389	1	52358			9287	14977	6199	6214	10888	10888					-0.06700928028260478
EADDMELPL	9	Unmodified	_EADDMELPL_					0	0	0			REV__nc|ENSG00000131759|P10276-3|RARA	REV__nc|ENSG00000131759|P10276-3|RARA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.292236328125	2	516.73134	1031.44813	-0.54066	-0.00027938	3.6466	0.0018843	3.1059	0.0016049	516.7337348295544	32.241	0.65567	32.253	31.902	32.558	0.011799					45	16	4	0	0	0	0.024354	1	2194	2194		30.504	0	1	534080	+		9288	23232	6200	6215	10889	10889					-0.06633898898871848
EADFMMPPI	9	Unmodified	_EADFMMPPI_					0	0	0			REV__nc|ENSG00000141027|O75376-3|NCOR1	REV__nc|ENSG00000141027|O75376-3|NCOR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7330322265625	2	525.735371	1049.45619	-1.6521	-0.00086857	-2.9778	-0.0015655	-4.6299	-0.0024341	525.7337586168185	43.781	0.95109	43.781	43.296	44.247	0					65	26	4	0	0	0	0.52323	1	4145	4145		57.811	2.3071	1	3735100	+		9289	24060	6201	6216	10890	10890					-0.06656043183102156
EADFSHTGW	9	Unmodified	_EADFSHTGW_					0	0	0		ENST00000446044.5_1_3:50685932-50686385:+|nuORF	ENST00000446044.5_1_3:50685932-50686385:+|nuORF	ENST00000446044.5_1_3:50685932-50686385:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2213134765625	2	525.219788	1048.42502	-0.96982	-0.00050937	3.6345	0.0019089	2.6647	0.0013996	525.2215702183395	28.207	0.72811	27.962	27.677	28.406	-0.24523					41	17	3	0	0	0	0.90698	1	1634	1634		31.955	2.8053	1	725950			9290	14448	6202	6217	10891	10891					-0.0972515690129967
EADFSPSVAF	10	Unmodified	_EADFSPSVAF_					0	0	0		ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7507934570312	2	535.245472	1068.47639	-1.3011	-0.00069642	2.1942	0.0011744	0.89305	0.000478	535.2465393500509	40.17	0.53193	39.94	39.811	40.343	-0.23021					19	13	3	0	0	0	0.03519	1	3431	3431		37.159	2.9866	1	145080			9291	784	6203	6218	10892	10892					-0.05510832927279807
EADGKKLL	8	Unmodified	_EADGKKLL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2235107421875	2	437.255643	872.496732	-0.31066	-0.00013584	2.2372	0.00097822	1.9265	0.00084239	437.2565583755788	25.847	1.0044	25.847	25.527	26.531	0					41	23	3	0	0	0	0.027866	1	1275	1275		47.657	0	1	230010			9292	6676	6204	6219	10893	10893					0.05538382523195651
EADHDSLLDLL	11	Unmodified	_EADHDSLLDLL_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.90576171875	3	414.206709	1239.5983	0.22844	9.462E-05	-2.7656	-0.0011455	-2.5372	-0.0010509	414.2065381008367	21.109	0.14767	21.18	21.106	21.254	0.071487					4	2	2	0	0	0	0.024751	1	574	574		41.08	23.913	1	5870.5			9293	4960	6205	6220	10894	10894					-0.011918356355408832
EADIKAGKYL	10	Unmodified	_EADIKAGKYL_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3046875	2	554.305864	1106.59717	-0.88005	-0.00048782	0.30346	0.00016821	-0.57659	-0.00031961	554.3059575570084	75.594	1.3606	75.594	75.155	76.516	0					93	35	4	0	0	0	0.71272	1	9294	9294		66.429	2.222	1	8513400			9294	2734	6206	6221	10895	10895					0.04813994786195508
EADILKLLP	9	Unmodified	_EADILKLLP_					0	0	0			REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.30810546875	2	506.307875	1010.6012	-0.1512	-7.6556E-05	0.31608	0.00016004	0.16488	8.348E-05	506.30791743129794	87.619	1.1107	87.481	87.122	88.232	-0.13734					65	26	4	0	0	0	0.27161	1	10660	10660		79.451	2.6769	1	765780	+		9295	24678	6207	6222	10896	10896					0.09632084279917308
EADILKLLP	9	Unmodified	_EADILKLLP_					0	0	0			REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3072509765625	2	506.307875	1010.6012	-1.1408	-0.00057759	3.4412	0.0017423	2.3004	0.0011647	506.30950533302877	43.859	1.1076	43.64	43.246	44.354	-0.21938					41	30	2	0	0	0	0.024021	1	4062	4062		25.574	0	1	357030	+		9296	24678	6207	6222	10897	10897					0.09632084279917308
EADISEHLT	9	Unmodified	_EADISEHLT_					0	0	0		CFAP61|p.Q787E|1|0.3|ENSG00000089101|chr20:20262986-20262986|C/G|missense_variant	CFAP61|p.Q787E|1|0.3|ENSG00000089101|chr20:20262986-20262986|C/G|missense_variant	CFAP61|p.Q787E|1|0.3|ENSG00000089101|chr20:20262986-20262986|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.30255126953125	2	507.740554	1013.46655	0.56502	0.00028688	0.2797	0.00014201	0.84471	0.00042889	507.7404668273181	54.597	0.81315	54.391	53.981	54.794	-0.20613					28	21	2	0	0	0	0.024323	1	5857	5857		35.618	1.4457	1	100280			9297	257	6208	6223	10898	10898					-0.0396402093266488
EADKRRLFP	9	Unmodified	_EADKRRLFP_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.2791748046875	2	566.317097	1130.61964	0.30948	0.00017527	2.9076	0.0016466	3.2171	0.0018219	566.3184224068059	79.048	0.59148	78.793	78.471	79.062	-0.25471					23	13	2	0	0	0	0.024523	1	9465	9465		21.96	7.095	1	221850			9298	8454	6209	6224	10899	10899					0.05955638974455724
EADLALRPP	9	Unmodified	_EADLALRPP_					0	0	0		nc|ENSG00000126562|Q96J92-3|WNK4;ENSG00000126562|ENST00000246914|WNK4	nc|ENSG00000126562|Q96J92-3|WNK4	nc|ENSG00000126562|Q96J92-3|WNK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7492370605469	2	491.271824	980.529095	-0.35708	-0.00017542	1.8009	0.00088471	1.4438	0.00070929	491.2728773600721	85.45	0.62151	85.392	85.063	85.684	-0.05761					27	14	3	0	0	0	0.024484	1	10705	10705		45.972	8.1607	1	177110			9299	4206	6210	6225	10900	10900					0.038051699261814065
EADLALRPP	9	Unmodified	_EADLALRPP_					0	0	0		nc|ENSG00000126562|Q96J92-3|WNK4;ENSG00000126562|ENST00000246914|WNK4	nc|ENSG00000126562|Q96J92-3|WNK4	nc|ENSG00000126562|Q96J92-3|WNK4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.271824	980.529095	1.0923	0.00053662	0.50868	0.0002499	1.601	0.00078652	491.2720765028823	85.436	0.74931	85.436	84.999	85.748	0	0.039374	-0.00081886	NaN	37.812	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222140			9300	4206	6210	6225							0.038051699261814065
EADQRVLGQ	9	Unmodified	_EADQRVLGQ_					0	0	0			REV__ENST00000533136.1_1_11:61665752-61666996:-|nuORF	REV__ENST00000533136.1_1_11:61665752-61666996:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.28631591796875	2	508.261988	1014.50942	-0.0052653	-2.6762E-06	4.4387	0.002256	4.4334	0.0022534	508.2642145782253	58.372	0.57386	58.195	58.06	58.634	-0.17776					21	13	2	0	0	0	0.024354	1	6404	6404		38.806	1.647	1	263370	+		9301	26211	6211	6226	10901	10901					0.002747939154460255
EADSPLEDPT	10	Unmodified	_EADSPLEDPT_					0	0	0			REV__ENSG00000204950|ENST00000378075|LRRC10B	REV__ENSG00000204950|ENST00000378075|LRRC10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7822265625	2	537.235301	1072.45605	-0.28016	-0.00015051	-3.6792	-0.0019766	-3.9594	-0.0021271	537.7347465386342	33.048	0.34119	33.105	32.8	33.141	0.056568					14	8	2	0	0	0	0.03519	1	2262	2262		32.812	0	1	47686	+		9302	28645	6212	6227	10902	10902					-0.07728048377748564
EADSVYGEW	9	Unmodified	_EADSVYGEW_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7737426757812	2	528.219454	1054.42436	-1.2291	-0.00064925	1.1223	0.00059281	-0.10685	-5.644E-05	528.2198606267905	33.284	2.3415	33.284	31.591	33.932	0					135	61	3	0	0	0	0.024405	1	2210	2210		20.947	6.2828	1	433750			9303	6721	6213	6228	10903	10903					-0.10067996341035723
EADTVMGPGGL	11	Unmodified	_EADTVMGPGGL_					0	0	0			REV__nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B	REV__nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.761474609375	2	523.744782	1045.47501	0.6142	0.00032169	-2.6838	-0.0014056	-2.0696	-0.0010839	523.743841719074	59.762	0.37692	59.586	59.401	59.777	-0.1761					18	9	3	0	0	0	0.02416	1	6594	6594		58.782	23.164	1	211990	+		9304	26860	6214	6229	10904	10904					-0.04590790287670643
EADVLTADVT	10	Unmodified	_EADVLTADVT_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2684936523438	2	517.256037	1032.49752	-0.94264	-0.00048759	1.3793	0.00071346	0.43667	0.00022587	517.2559431378705	28.221	0.2396	27.976	27.882	28.121	-0.24524					10	5	3	0	0	0	0.03519	1	1631	1631		34.173	0	1	39701	+		9305	22204	6215	6230	10905	10905					-0.017428676184408687
EADWPHRW	8	Unmodified	_EADWPHRW_					0	0	0			REV__ENST00000354336.7_1_22:21271769-21272156:+|nuORF	REV__ENST00000354336.7_1_22:21271769-21272156:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.326171875	2	548.75159	1095.48863	0.12836	7.044E-05	0.82849	0.00045464	0.95685	0.00052508	548.7519103303886	81.569	0.79385	81.376	81.05	81.844	-0.19333					47	18	5	0	0	0	0.027866	1	9811	9811		31.955	1.6371	1	518010	+		9306	30753	6216	6231	10906	10906					-0.05529751673566352
EAEARAPEGAA	11	Unmodified	_EAEARAPEGAA_					0	0	0			REV__ENST00000570077.1_1_15:62538426-62538813:-|nuORF	REV__ENST00000570077.1_1_15:62538426-62538813:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.773193359375	2	536.256902	1070.49925	-1.0168	-0.00054529	-2.5842	-0.0013858	-3.601	-0.0019311	536.2549150059975	40.678	1.6195	40.701	40.013	41.633	0.023003					107	45	3	0	0	0	0.024643	1	3700	3700		32.751	0	1	1547400	+		9307	35386	6217	6232	10907	10907					-0.03317813809803738
EAECRRAQHSW	11	Unmodified	_EAECRRAQHSW_					0	0	0		ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2606506347656	3	458.210682	1371.61022	0.15526	7.1144E-05	4.4547	0.0020412	4.61	0.0021123	458.2127248942369	78.142	0.571	78.142	77.918	78.489	0					20	13	2	0	0	0	0.024834	1	9647	9647		17.833	12.691	1	167020			9308	3939	6218	6233	10908	10908					-0.06072497373384067
EAEDKSIRLGL	11	Unmodified	_EAEDKSIRLGL_					0	0	0		ENSG00000135643|ENST00000258111|KCNMB4	ENSG00000135643|ENST00000258111|KCNMB4	ENSG00000135643|ENST00000258111|KCNMB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.8793029785156	3	410.894465	1229.66157	0.037089	1.524E-05	3.2179	0.0013222	3.255	0.0013375	410.8960841011287	31.512	0.59362	31.327	31.099	31.693	-0.18503					18	14	2	0	0	0	0.024739	1	2095	2095		42.338	3.5845	1	37688			9309	4920	6219	6234	10909	10909					0.05592149872336449
EAEEAGLPL	9	Unmodified	_EAEEAGLPL_					0	0	0		ENSG00000126767|ENST00000376983|ELK1	ENSG00000126767|ENST00000376983|ELK1	ENSG00000126767|ENST00000376983|ELK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.268310546875	2	464.73474	927.454927	0.59393	0.00027602	1.2296	0.00057144	1.8235	0.00084746	464.7351289573555	41.971	0.6193	41.997	41.636	42.255	0.026012					30	17	2	0	0	0	0.024325	1	3805	3805		50.025	11.218	1	676970			9310	4211	6220	6235	10910	10910					-0.01170217955973385
EAEEAITPPPN	11	Unmodified	_EAEEAITPPPN_					0	0	0			REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	584.8383178710938	2	584.280043	1166.54553	-1.4281	-0.0008344	-3.8961	-0.0022764	-5.3241	-0.0031108	584.277726537258	53.163	0.66818	53.016	52.607	53.275	-0.14723					24	17	2	0	0	0	0.024814	1	5669	5669		70.816	44.123	1	155730	+		9311	20579	6221	6236	10911	10911					-0.03107793698382011
EAEFEAERA	9	Unmodified	_EAEFEAERA_					0	0	0			REV__ENST00000475911.2_1_1:159846344-159850487:-|nuORF	REV__ENST00000475911.2_1_1:159846344-159850487:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.238037109375	2	526.238178	1050.4618	-1.0053	-0.00052903	0.86206	0.00045365	-0.14325	-7.5386E-05	526.238538703008	56.396	0.70555	56.396	56.104	56.809	0					53	19	4	0	0	0	0.45795	1	6279	6279		62.107	1.1355	1	3859000	+		9312	28726	6222	6237	10912	10912					-0.06140905075426417
EAEFQLIEL	9	Unmodified	_EAEFQLIEL_					0	0	0			REV__SERPINE3|p.G67E|1|0.07|ENSG00000253309|chr13:51341291-51341291|G/A|missense_variant	REV__SERPINE3|p.G67E|1|0.07|ENSG00000253309|chr13:51341291-51341291|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2866821289062	2	546.284597	1090.55464	-1.3975	-0.00076342	4.1403	0.0022618	2.7429	0.0014984	546.286669597436	84.326	0.55037	84.254	83.917	84.468	-0.072769					41	12	4	0	0	0	0.047345	1	10530	10530		129.68	8.8142	1	2251600	+		9313	37476	6223	6238	10913	10913					0.012985996579345738
EAEFVGVSH	9	Unmodified	_EAEFVGVSH_					0	0	0		ENST00000502915.1_1_4:139481866-139482694:+|nuORF;ENSG00000141101|ENST00000268802|NOB1	ENST00000502915.1_1_4:139481866-139482694:+|nuORF	ENST00000502915.1_1_4:139481866-139482694:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.28399658203125	2	487.732532	973.45051	-0.2708	-0.00013208	0.45748	0.00022313	0.18668	9.1049E-05	487.7325964290675	55.567	2.0748	55.411	55.093	57.168	-0.15602					95	57	2	0	0	0	0.024262	1	6093	6093		30.504	0	1	284230			9314	5472	6224	6239	10914	10914					-0.03727682378894315
EAEGTLAAWRP	11	Unmodified	_EAEGTLAAWRP_					0	0	0			REV__ENST00000432521.2_1_1:2484838-2485120:-|nuORF	REV__ENST00000432521.2_1_1:2484838-2485120:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5718688964844	3	400.871772	1199.59349	0.55116	0.00022095	0.99368	0.00039834	1.5448	0.00061928	401.2071055200419	33.443	0.16077	33.212	33.153	33.314	-0.23107					5	3	2	0	0	0	0.024734	1	2376	2376		41.08	27.572	1	42323	+		9315	32386	6225	6240	10915	10915					0.00167325012330366
EAEKNLTDL	9	Unmodified	_EAEKNLTDL_					0	0	0		ENSG00000132639|ENST00000254976|SNAP25	ENSG00000132639|ENST00000254976|SNAP25	ENSG00000132639|ENST00000254976|SNAP25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7631225585938	2	516.764029	1031.5135	-0.38933	-0.00020119	0.41777	0.00021589	0.028441	1.4697E-05	516.7640415644235	67.305	0.74509	67.305	67.01	67.755	0					48	18	4	0	0	0	0.26413	1	8034	8034		80.455	7.5754	1	2184000			9316	4630	6226	6241	10916	10916					-0.0009916138151311316
EAEKVLHYL	9	Unmodified	_EAEKVLHYL_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.27734375	2	551.300581	1100.58661	-0.04747	-2.617E-05	-0.52915	-0.00029172	-0.57662	-0.00031789	551.3001461084996	70.414	1.312	70.157	69.768	71.08	-0.25713					69	33	4	0	0	0	0.024319	1	8276	8276		47.657	19.576	1	5831600			9317	3494	6227	6242	10917	10917					0.04034012131751297
EAELEPRCC	9	Unmodified	_EAELEPRCC_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2210693359375	2	525.223159	1048.43177	-0.78894	-0.00041437	-3.0318	-0.0015924	-3.8208	-0.0020068	525.2214415897082	28.034	0.81479	27.865	27.609	28.424	-0.16897					46	19	3	0	0	0	0.85329	1	1596	1596		35.618	6.4687	1	1010900	+		9318	28499	6228	6243	10918	10918					-0.09051303336627825
EAELLLLQA	9	Unmodified	_EAELLLLQA_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.286865234375	2	500.289682	998.564812	0.34516	0.00017268	-0.4345	-0.00021737	-0.089334	-4.4693E-05	500.28929533412116	89.425	0.71712	89.403	89.157	89.874	-0.021645					29	16	2	0	0	0	0.17822	1	11269	11269		93.195	8.0346	1	909590			9319	5772	6229	6244	10919	10919					0.06547207383198383
EAELPPKAR	9	Unmodified	_EAELPPKAR_					0	0	0			REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.3546447753906	2	505.785099	1009.55564	-1.0023	-0.00050697	-2.7323	-0.0013819	-3.7346	-0.0018889	505.78367636971456	90.494	0.74236	90.339	89.983	90.725	-0.1552					26	17	2	0	0	0	0.024021	1	11045	11045		40.778	7.9657	1	66322	+		9320	36006	6230	6245	10920	10920					0.05124858817521272
EAELPPKAR	9	Unmodified	_EAELPPKAR_					0	0	0			REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.785099	1009.55564	-1.3786	-0.00069727	-2.3037	-0.0011652	-3.6823	-0.0018624	505.783793522235	90.634	1.1955	90.634	89.896	91.092	0	0.12919	0.00074734	NaN	40.778	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217320	+		9321	36006	6230	6245							0.05124858817521272
EAELPPKAR	9	Unmodified	_EAELPPKAR_					0	0	0			REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.785099	1009.55564	-0.22517	-0.00011389	-3.2308	-0.0016341	-3.4559	-0.001748	505.7832768743274	90.646	1.1509	90.629	89.879	91.03	-0.016716	0.12414	-0.00019046	NaN	40.778	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267340	+		9322	36006	6230	6245							0.05124858817521272
EAELPPKAR	9	Unmodified	_EAELPPKAR_					0	0	0			REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	REV__EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.785099	1009.55564	0.2875	0.00014541	-3.7267	-0.0018849	-3.4392	-0.0017395	505.78305900891235	90.61	0.91351	90.621	90.119	91.033	0.011276	0.11564	-0.00069217	NaN	40.778	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266480	+		9323	36006	6230	6245							0.05124858817521272
EAELRWAQ	8	Unmodified	_EAELRWAQ_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7827453613281	2	501.753798	1001.49304	-1.2561	-0.00063026	2.7757	0.0013927	1.5196	0.00076244	501.754325465627	44.343	0.19378	44.198	44.099	44.292	-0.14471					8	5	2	0	0	0	0.027866	1	4213	4213		19.36	1.995	1	177540	+		9324	37528	6231	6246	10921	10921					-0.007642872506721687
EAEMKLELL	9	Unmodified	_EAEMKLELL_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2941284179688	2	538.288825	1074.5631	-1.4272	-0.00076825	1.2628	0.00067973	-0.16445	-8.8521E-05	538.2871624252432	91.57	0.96288	91.57	91.215	92.178	0					78	22	5	0	0	0	0.43628	1	11609	11609		63.534	8.0296	1	1818900	+		9325	20312	6232	6247	10922	10922					0.028798303029361705
EAEMKLELL	9	Unmodified	_EAEMKLELL_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.2943115234375	2	538.288825	1074.5631	-0.26911	-0.00014486	0.45116	0.00024286	0.18205	9.7998E-05	538.286807192827	91.564	1.31	91.575	91.154	92.464	0.010269					85	31	5	0	0	0	0.32064	2	11528	11528;11540		72.879	10.773	1	1934800	+		9326	20312	6232	6247	10923;10924	10923					0.028798303029361705
EAENELSLL	9	Unmodified	_EAENELSLL_					0	0	0			REV__nc|ENSG00000154645|Q9H9P2-2|CHODL	REV__nc|ENSG00000154645|Q9H9P2-2|CHODL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.78753662109375	2	509.258579	1016.50261	-0.13892	-7.0747E-05	3.6898	0.0018791	3.5509	0.0018083	509.2606077118417	59.556	1.3224	59.642	58.849	60.171	0.085682					81	35	3	0	0	0	0.024263	1	6814	6814		42.396	0	1	915980	+		9327	24968	6233	6248	10925	10925					-0.004985637557979317
EAEPGARNK	9	Unmodified	_EAEPGARNK_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2349548339844	2	486.24888	970.483208	-0.38285	-0.00018616	4.0813	0.0019845	3.6984	0.0017984	486.25051524529596	47.878	0.40968	47.78	47.557	47.966	-0.097553					16	10	2	0	0	0	0.024427	1	4738	4738		42.396	11.892	1	155770	+		9328	20465	6234	6249	10926	10926					-0.0032147525605523697
EAERILPGI	9	Unmodified	_EAERILPGI_					0	0	0		ENSG00000157119|ENST00000287777|KLHL40;nc|ENSG00000157119|Q2TBA0-2|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2887878417969	2	499.287474	996.560395	0.42711	0.00021325	-1.8857	-0.00094153	-1.4586	-0.00072828	499.28636997274714	49.083	0.86688	49.083	48.864	49.731	0					45	23	3	0	0	0	0.59099	1	5069	5069		53.351	2.016	1	1942000			9329	6578	6235	6250	10927	10927					0.061977429602734446
EAERLLAPF	9	Unmodified	_EAERLLAPF_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;ENST00000505732.5_1_9:15186859-15307321:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.307861328125	2	523.287474	1044.5604	-0.4371	-0.00022873	0.98906	0.00051756	0.55196	0.00028884	523.7894386508148	30.772	0.74519	30.847	30.626	31.372	0.074316					33	17	3	0	0	0	0.024477	1	1970	1970		27.882	0	1	232970			9330	6457	6236	6251	10928	10928					0.03989742960266085
EAERPRPL	8	Unmodified	_EAERPRPL_					0	0	0		ENST00000320431.7_1_3:49755004-49755133:-|nuORF;ENSG00000099381|ENST00000262519|SETD1A	ENST00000320431.7_1_3:49755004-49755133:-|nuORF	ENST00000320431.7_1_3:49755004-49755133:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2712707519531	2	484.269616	966.524678	-0.34493	-0.00016704	0.21914	0.00010612	-0.12578	-6.0913E-05	484.2695766670706	31.309	0.70725	31.321	30.956	31.663	0.011799					59	16	5	0	0	0	0.77775	1	2057	2057		60.972	0	1	3229500			9331	2076	6237	6252	10929	10929					0.04007705503283887
EAERRNQEA	9	Unmodified	_EAERRNQEA_					0	0	0			REV__ENSG00000167916|ENST00000264651|KRT24	REV__ENSG00000167916|ENST00000264651|KRT24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3168334960938	2	551.765426	1101.5163	-0.1938	-0.00010693	2.822	0.0015571	2.6282	0.0014502	552.2683886066425	24.795	0.17689	24.62	24.511	24.688	-0.17484					5	3	2	0	0	0	0.023842	1	1105	1105		87.696	15.819	1	25736	+	+	9332	19578	6238	6253	10930	10930					-0.03039893204004329
EAESRSPSPL	10	Unmodified	_EAESRSPSPL_					0	0	0		nc|ENSG00000084710|Q9Y2G0-2|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B;ENSG00000084710|ENST00000403714|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.769287109375	2	536.767103	1071.51965	-0.10563	-5.67E-05	3.4675	0.0018613	3.3619	0.0018046	536.7689990577634	87.091	1.4179	87.112	86.417	87.834	0.021263					62	24	4	0	0	0	0.88896	1	10896	10896		54.776	3.5836	1	4286000			9333	1776	6239	6254	10931	10931					-0.013246431499965183
EAETLAPVQ	9	Unmodified	_EAETLAPVQ_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1;ENST00000485244.1_1_3:149243755-149260220:-|nuORF;ENST00000471586.5_2_3:149238594-149258828:-|nuORF;ENST00000494754.1_2_3:149238594-149258041:-|nuORF	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.79254150390625	2	479.248015	956.481476	-0.017505	-8.3894E-06	2.0926	0.0010029	2.0751	0.00099448	479.2482988666614	30.563	0.4206	30.319	30.245	30.666	-0.24415					11	9	2	0	0	0	0.022832	1	1969	1969		93.195	0	1	48267			9334	941	6240	6255	10932	10932					0.001494709353323742
EAETLLHPV	9	Unmodified	_EAETLLHPV_					0	0	0			REV__ENSG00000145375|ENST00000274008|SPATA5	REV__ENSG00000145375|ENST00000274008|SPATA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.3037109375	2	504.771657	1007.52876	1.5332	0.00077391	3.588	0.0018111	5.1212	0.002585	504.77333640991964	23.455	0.62618	23.264	23.034	23.66	-0.19117					33	14	3	0	0	0	0.024412	1	907	907		40.573	15.122	1	471750	+		9335	24405	6241	6256	10933	10933					0.02529750206326753
EAETVAHKIQL	11	Unmodified	_EAETVAHKIQL_					0	0	0			REV__ENSG00000108819|ENST00000612501|PPP1R9B;REV__nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.86566162109375	3	413.562827	1237.66665	1.3934	0.00057625	-2.7744	-0.0011474	-1.381	-0.00057115	413.5613182342957	19.535	0.38218	19.535	19.218	19.6	0					10	7	2	0	0	0	0.024731	1	404	404		24.232	0	1	20234	+		9336	25203;21764	6242	6257	10934	10934					0.057324537349586535
EAEVGGSRGQE	11	Unmodified	_EAEVGGSRGQE_					0	0	0		AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|1|1|sense	AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|1|1|sense	AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|1|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.7576904296875	2	559.757266	1117.49998	0.12055	6.7476E-05	0.27192	0.00015221	0.39247	0.00021969	559.757094094555	71.69	0.81389	71.415	71.056	71.87	-0.2751					44	19	3	0	0	0	0.94988	1	8382	8382		47.96	5.5634	1	1067800			9337	72	6243	6258	10935	10935					-0.054070191607706874
EAFEKYLEM	9	Unmodified	_EAFEKYLEM_					0	0	0			REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.2883911132812	2	580.270632	1158.52671	-0.44784	-0.00025987	-4.0434	-0.0023463	-4.4912	-0.0026061	580.2684183100923	79.35	1.1242	79.13	78.832	79.957	-0.21923					32	26	2	0	0	0	0.024374	1	9504	9504		49.442	17.912	1	83211	+		9338	28286	6244	6259	10936	10936					-0.04621046593797473
EAFGSGVALLA	11	Unmodified	_EAFGSGVALLA_					0	0	0			REV__ENST00000528196.5_2_11:8772194-8795704:-|nuORF	REV__ENST00000528196.5_2_11:8772194-8795704:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7781982421875	2	517.779482	1033.54441	0.50518	0.00026157	-1.3892	-0.00071929	-0.88399	-0.00045771	517.7788390794499	85.729	0.84232	85.729	85.414	86.257	0					27	19	2	0	0	0	0.024747	1	10786	10786		39.253	6.5023	1	636570	+		9339	34489	6245	6260	10937	10937					0.028980367233771176
EAFHALQIL	9	Unmodified	_EAFHALQIL_					0	0	0		ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.2894287109375	2	521.290017	1040.56548	-0.18777	-9.7882E-05	-0.18211	-9.4935E-05	-0.36988	-0.00019282	521.2900853422124	62.771	1.0097	62.825	62.292	63.302	0.054104					62	25	4	0	0	0	0.35646	1	7238	7238		68.787	2.8894	1	1852000			9340	10519	6246	6261	10938	10938					0.0468204682290434
EAFHELCDR	9	Unmodified	_EAFHELCDR_					0	0	0			REV__ENSG00000131477|ENST00000253796|RAMP2	REV__ENSG00000131477|ENST00000253796|RAMP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2717895507812	2	560.248023	1118.48149	-0.13486	-7.5556E-05	1.333	0.00074684	1.1982	0.00067128	560.2496646467262	93.198	0.50684	93.198	93.051	93.558	0					18	11	2	0	0	0	0.022832	1	11858	11858		71.877	0	1	78018	+		9341	23215	6247	6262	10939	10939					-0.07300852336334174
EAFKRARR	8	Unmodified	_EAFKRARR_					0	0	0			REV__ENST00000583651.1_1_18:70210279-70210456:-|nuORF	REV__ENST00000583651.1_1_18:70210279-70210456:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	517.304324	1032.5941	-0.74847	-0.00038719	2.6443	0.0013679	1.8958	0.00098072	517.3055417251097	44.477	0.64875	44.233	43.867	44.516	-0.2444					49	17	4	0	0	0	0.027866	1	4176	4176		17.365	5.1581	1	1383800	+		9342	35553	6248	6263	10940	10940					0.07910209242686506
EAFMVKNIVP	10	Unmodified	_EAFMVKNIVP_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.8427124023438	2	574.312635	1146.61072	-0.65767	-0.00037771	-3.3548	-0.0019267	-4.0124	-0.0023044	574.3105554871754	26.872	1.1079	26.715	26.241	27.349	-0.15664					61	26	3	0	0	0	0.03519	1	1433	1433		13.454	0	1	168370			9343	2137	6249	6264	10941	10941					0.04327529293777843
EAFNGLPNL	9	Unmodified	_EAFNGLPNL_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.28472900390625	2	487.750724	973.486896	-0.19882	-9.6975E-05	4.2029	0.00205	4.0041	0.001953	487.75241994242464	54.921	0.55858	54.921	54.558	55.116	0					24	15	2	0	0	0	0.024374	1	6045	6045		49.442	8.8689	1	375350			9344	2818	6250	6265	10942	10942					-0.0009080548219344564
EAFNVPVEP	9	Unmodified	_EAFNVPVEP_					0	0	0			REV__ENSG00000029993|ENST00000325307|HMGB3	REV__ENSG00000029993|ENST00000325307|HMGB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7843933105469	2	501.250557	1000.48656	-0.38024	-0.0001906	-1.9129	-0.00095886	-2.2932	-0.0011495	501.24956784571435	71.965	0.36603	71.759	71.618	71.984	-0.20613					14	8	2	0	0	0	0.024288	1	8429	8429		52.937	0	1	86336	+		9345	20041	6251	6266	10943	10943					-0.013662252020480992
EAFPKIARS	9	Unmodified	_EAFPKIARS_					0	0	0			REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2908630371094	2	509.787641	1017.56073	0.083505	4.257E-05	3.1025	0.0015816	3.186	0.0016242	509.78786717027975	57.7	0.59554	57.526	57.229	57.825	-0.1749					44	15	5	0	0	0	0.70156	1	6471	6471		45.972	1.8554	1	2690500	+		9346	22033	6252	6267	10944	10944					0.05265162680132107
EAFQTVLVI	9	Unmodified	_EAFQTVLVI_					0	0	0		ENSG00000159899|ENST00000342694|NPR2;nc|ENSG00000159899|P20594-2|NPR2	ENSG00000159899|ENST00000342694|NPR2	ENSG00000159899|ENST00000342694|NPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2641296386719	2	510.292225	1018.5699	-1.0043	-0.0005125	-2.7836	-0.0014205	-3.7879	-0.001933	510.2902145459093	80.973	0.47993	80.997	80.89	81.37	0.023903					22	11	3	0	0	0	0.024323	1	10025	10025		53.351	0	1	51016			9347	6773	6253	6268	10945	10945					0.06135511245793168
EAFRQIKDL	9	Unmodified	_EAFRQIKDL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2717895507812	2	560.31148	1118.60841	-0.13461	-7.5421E-05	2.7951	0.0015661	2.6605	0.0014907	560.3127452500024	93.253	1.4678	93.253	92.579	94.047	0					108	34	5	0	0	0	0.022587	1	11858	11858		64.207	0	1	1475200			9348	8693	6254	6269	10946	10946					0.05384816880314247
EAFSNLPND	9	Unmodified	_EAFSNLPND_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75848388671875	2	503.727446	1005.44034	-0.18229	-9.1823E-05	-0.44261	-0.00022295	-0.6249	-0.00031478	503.727112551573	36.55	0.8947	36.55	36.263	37.158	0					33	23	2	0	0	0	0.024292	1	3003	3003		40.778	3.6191	1	615180			9349	1376	6255	6270	10947	10947					-0.06216290104146083
EAFSNLPND	9	Unmodified	_EAFSNLPND_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.727446	1005.44034	-0.79427	-0.0004001	0.30694	0.00015461	-0.48733	-0.00024548	503.7274894000273	36.395	0.59453	36.353	36.136	36.73	-0.042454	-0.1206	0.00031611	NaN	40.778	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601630			9350	1376	6255	6270							-0.06216290104146083
EAFSNLPND	9	Unmodified	_EAFSNLPND_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.727446	1005.44034	-0.4484	-0.00022587	-0.022245	-1.1206E-05	-0.47065	-0.00023708	503.7273357540732	36.445	0.57629	36.483	36.267	36.843	0.038044	0.0099137	-1.5529E-05	NaN	40.778	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568630			9351	1376	6255	6270							-0.06216290104146083
EAFVLVEYL	9	Unmodified	_EAFVLVEYL_					0	0	0			REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.2477416992188	2	541.792058	1081.56956	-0.56041	-0.00030363	0.79391	0.00043013	0.2335	0.00012651	541.7922438823464	89.977	0.66815	89.839	89.488	90.156	-0.13824					32	15	3	0	0	0	0.024477	1	10977	10977		35.618	11.416	1	191990	+		9352	25124	6256	6271	10948	10948					0.03204091525935837
EAFVREVL	8	Unmodified	_EAFVREVL_					0	0	0		ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65654989-65655220:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.7692565917969	2	481.768917	961.523281	-0.2939	-0.00014159	0.4808	0.00023163	0.1869	9.0041E-05	481.76893065541236	57.428	0.68442	57.26	57.001	57.686	-0.1672					49	17	4	0	0	0	0.56592	1	6271	6271		79.451	0	1	1841100			9353	8284	6257	6272	10949	10949					0.04098071414523474
EAFVREVL	8	Unmodified	_EAFVREVL_					0	0	0		ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65654989-65655220:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.7693786621094	2	481.768917	961.523281	0.073445	3.5384E-05	-0.074399	-3.5843E-05	-0.00095346	-4.5935E-07	481.768731758878	57.465	0.70337	57.263	56.996	57.7	-0.20208					42	18	3	0	0	0	0.44658	1	6276	6276		90.777	0	1	2038100			9354	8284	6257	6272	10950	10950					0.04098071414523474
EAFVRHIL	8	Unmodified	_EAFVRHIL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.784423828125	2	492.784902	983.55525	-0.3744	-0.0001845	-0.86307	-0.00042531	-1.2375	-0.00060981	492.7845990078756	46.638	2.5459	46.541	46.223	48.769	-0.096653					180	69	4	0	0	0	0.073916	7	4498	4487;4498;4510;4540;4552;4564;4589		167.82	79.182	1	127140000			9355	1996	6258	6273	10951;10952;10953;10954;10955;10956;10957	10952					0.06281483888335515
EAFVRHIL	8	Unmodified	_EAFVRHIL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.7845458984375	2	492.784902	983.55525	0.098125	4.8355E-05	-1.4128	-0.00069623	-1.3147	-0.00064787	492.7843418039209	46.945	2.5295	46.675	46.341	48.871	-0.26939					181	69	4	0	0	0	0.073916	8	4515	4515;4527;4539;4551;4563;4582;4595;4614		167.82	73.818	1	134120000			9356	1996	6258	6273	10958;10959;10960;10961;10962;10963;10964;10965	10958					0.06281483888335515
EAFVRHIL	8	Unmodified	_EAFVRHIL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.7848815917969	2	492.784902	983.55525	-0.37866	-0.0001866	-0.90525	-0.00044609	-1.2839	-0.00063269	492.7845814796253	46.732	2.4879	46.538	46.238	48.726	-0.19387					181	68	4	0	0	0	0.073916	8	4488	4488;4497;4509;4521;4539;4551;4571;4590		167.82	79.182	1	134440000			9357	1996	6258	6273	10966;10967;10968;10969;10970;10971;10972;10973	10966					0.06281483888335515
EAGAEEKAIL	10	Unmodified	_EAGAEEKAIL_					0	0	0			REV__ENST00000582645.5_1_18:21914291-21957397:-|nuORF	REV__ENST00000582645.5_1_18:21914291-21957397:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3140869140625	2	515.774396	1029.53424	-0.21885	-0.00011288	0.97377	0.00050224	0.75492	0.00038937	515.7755964983962	98.063	0.37668	98.063	97.856	98.233	0					14	8	2	0	0	0	0.03519	1	12542	12542		30.318	0	1	53167	+		9358	35541	6259	6274	10974	10974					0.02065428998139396
EAGALTPALR	10	Unmodified	_EAGALTPALR_					0	0	0		ENST00000589225.5_1_17:76834724-76836844:-|nuORF	ENST00000589225.5_1_17:76834724-76836844:-|nuORF	ENST00000589225.5_1_17:76834724-76836844:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7752990722656	2	499.785099	997.555644	-0.38857	-0.0001942	0.20756	0.00010374	-0.18101	-9.0468E-05	499.7851074950178	50.359	0.58904	50.359	50.02	50.609	0					35	17	3	0	0	0	0.03519	1	5294	5294		25.574	13.367	1	2001600			9359	17306	6260	6275	10975	10975					0.05676858817514585
EAGDLQFQD	9	Unmodified	_EAGDLQFQD_					0	0	0			REV__ENSG00000177694|ENST00000454872|NAALADL2	REV__ENSG00000177694|ENST00000454872|NAALADL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7287902832031	2	511.724904	1021.43525	-0.23424	-0.00011987	-1.2002	-0.00061417	-1.4344	-0.00073404	511.7239193453265	55.111	0.5206	54.961	54.745	55.266	-0.15036					23	14	2	0	0	0	0.023007	1	6027	6027		56.721	10.769	1	303210	+		9360	27139	6261	6276	10976	10976					-0.07460593966766282
EAGGPESDL	9	Unmodified	_EAGGPESDL_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.771240234375	2	437.693072	873.371591	-0.54992	-0.0002407	2.762	0.0012089	2.2121	0.00096821	437.6939302784096	22.669	0.32071	22.484	22.325	22.646	-0.18539					9	6	2	0	0	0	0.024487	1	835	835		17.365	0	1	19784	+		9361	25347	6262	6277	10977	10977					-0.07015954403834712
EAGIIWDSV	9	Unmodified	_EAGIIWDSV_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2497863769531	2	495.250557	988.486562	0.17161	8.4989E-05	-0.44625	-0.00022101	-0.27464	-0.00013602	495.25025486167794	68.692	1.1379	68.462	68.039	69.177	-0.23048					73	27	4	0	0	0	0.25032	1	7956	7956		82.305	2.854	1	4785100			9362	2494	6263	6278	10978	10978					-0.00814225202043417
EAGKSFLVL	9	Unmodified	_EAGKSFLVL_					0	0	0			REV__ENST00000354336.7_1_22:21307442-21307709:+|nuORF	REV__ENST00000354336.7_1_22:21307442-21307709:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.78424072265625	2	482.279118	962.543683	0.75957	0.00036633	-0.48437	-0.0002336	0.2752	0.00013272	482.2788051397828	72.513	0.71231	72.232	71.956	72.668	-0.28124					32	17	3	0	0	0	0.024506	1	8847	8847		23.042	10.083	1	311530	+		9363	30754	6264	6279	10979	10979					0.06091242074330694
EAGLLLYLKTG	11	Unmodified	_EAGLLLYLKTG_					0	0	0		nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2;nc|ENSG00000138346|P51530-2|DNA2;nc|ENSG00000138346|P51530-3|DNA2	nc|ENSG00000138346|P51530-4|DNA2	nc|ENSG00000138346|P51530-4|DNA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3434448242188	2	589.344989	1176.67542	-1.1102	-0.00065427	-2.5095	-0.001479	-3.6197	-0.0021332	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	1.0017	1	11328	11328		36.447	6.129	1	4794700			9364	5228	6265	6280	10980	10980					0.09415427371413898
EAGLTFYAR	9	Unmodified	_EAGLTFYAR_					0	0	0			REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8025512695312	2	514.263999	1026.51345	-0.12083	-6.2139E-05	2.0235	0.0010406	1.9027	0.00097848	514.7663888873458	59.119	0.4771	59.205	59.063	59.54	0.085682					17	12	2	0	0	0	0.024323	1	6704	6704		20.947	0	1	113010	+		9365	27644	6266	6281	10981	10981					0.0012488340912568674
EAGLTFYAR	9	Unmodified	_EAGLTFYAR_					0	0	0			REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.263999	1026.51345	0.77148	0.00039674	2.3872	0.0012276	3.1587	0.0016244	514.2654434354426	59.329	0.1871	59.329	59.257	59.444	0	0.062054	0.00017244	NaN	27.882	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40064	+		9366	27644	6266	6281							0.0012488340912568674
EAGMGVLHK	9	Unmodified	_EAGMGVLHK_					0	0	0		ENST00000532268.1_1_11:126133989-126134477:-|nuORF	ENST00000532268.1_1_11:126133989-126134477:-|nuORF	ENST00000532268.1_1_11:126133989-126134477:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7718505859375	2	471.247295	940.480036	-0.17556	-8.2732E-05	2.6292	0.001239	2.4537	0.0011563	471.24992845754133	46.676	0.36003	46.523	46.376	46.736	-0.15301					19	9	3	0	0	0	0.024263	1	4622	4622		51.335	3.6781	1	76255			9367	16284	6267	6282	10982	10982					0.00741558365587025
EAGPGKAWAEL	11	Unmodified	_EAGPGKAWAEL_					0	0	0			REV__ENSG00000100065|ENST00000251973|CARD10	REV__ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.3158569335938	2	564.787838	1127.56112	-0.27974	-0.00015799	-1.8918	-0.0010685	-2.1716	-0.0012265	564.7862463226024	94.757	0.52332	94.757	94.518	95.041	-0.00022888					19	11	2	0	0	0	0.02479	1	12043	12043		53.089	19.573	1	104180	+		9368	21042	6268	6283	10983	10983					0.0024453760931919533
EAGPGLFPK	9	Unmodified	_EAGPGLFPK_					0	0	0		ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.279296875	2	458.25036	914.486168	-0.93428	-0.00042813	-1.989	-0.00091144	-2.9232	-0.0013396	458.2489884844531	44.209	0.34929	43.99	43.826	44.176	-0.21939					13	9	2	0	0	0	0.024381	1	4072	4072		21.96	0	1	119180			9369	14588	6269	6284	10984	10984					0.025503998687554486
EAGPLPIRQI	10	Unmodified	_EAGPLPIRQI_					0	0	0			REV__nc|ENSG00000001167|P23511-2|NFYA	REV__nc|ENSG00000001167|P23511-2|NFYA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8031005859375	2	547.321848	1092.62914	-1.1442	-0.00062623	-2.0054	-0.0010976	-3.1496	-0.0017238	547.3207075356328	45.65	0.64264	45.498	45.077	45.719	-0.15156					28	18	2	0	0	0	0.03519	1	4403	4403		40.778	16.259	1	288400	+		9370	19757	6270	6285	10985	10985					0.08653407259998858
EAGPNGNPL	9	Unmodified	_EAGPNGNPL_					0	0	0		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENST00000584842.1_1_17:8141634-8146421:-|nuORF	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7480773925781	2	434.711599	867.408646	-0.61826	-0.00026876	0.14105	6.1317E-05	-0.4772	-0.00020745	434.711888172875	65.455	0.17377	65.182	65.055	65.229	-0.27282					11	4	3	0	0	0	0.022484	1	7709	7709		51.335	5.3835	1	208840			9371	8852	6271	6286	10986	10986					-0.030362380674318956
EAGQRLRA	8	Unmodified	_EAGQRLRA_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2319030761719	2	450.754133	899.493713	-0.93524	-0.00042156	-0.86274	-0.00038888	-1.798	-0.00081045	450.7531141522306	35.982	0.23671	35.939	35.83	36.067	-0.042458					9	6	2	0	0	0	0.027866	1	2783	2783		32.812	2.3088	1	48850			9372	5428	6272	6287	10987	10987					0.03994552189033129
EAGSPTIMLL	10	Unmodified	_EAGSPTIMLL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2713012695312	2	516.275718	1030.53688	-1.5121	-0.00078064	3.0561	0.0015778	1.544	0.00079714	516.2775742079064	28.771	0.72614	28.525	28.241	28.967	-0.24523					28	16	2	0	0	0	0.03519	1	1673	1673		19.997	0	1	151950			9373	1458	6273	6288	10988	10988					0.022835611314576454
EAGVERWYLKY	11	Unmodified	_EAGVERWYLKY_					0	0	0			REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2039489746094	3	471.910227	1412.70885	-0.20753	-9.7937E-05	-0.74465	-0.00035141	-0.95218	-0.00044934	472.2447336834971	30.502	0.71293	30.258	29.737	30.45	-0.24415					21	16	2	0	0	0	0.024767	1	1902	1902		31.068	10.036	1	299700	+		9374	21405	6274	6289	10989	10989					0.019004291433248
EAGWERMRSNP	11	Oxidation (M)	_EAGWERM(Oxidation (M))RSNP_		EAGWERM(1)RSNP		EAGWERM(41)RSNP	0	0	1			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.2066955566406	3	450.206937	1347.59898	0.82021	0.00036926	-1.662	-0.00074826	-0.84183	-0.000379	450.2062862239645	22.791	1.1455	22.589	22.285	23.431	-0.20199					72	25	5	0	0	0	0.98082	1	798	798		41.08	9.0459	1	4455900	+		9375	20260	6275	6290	10990	10990		624			-0.060913194674867555
EAHAKVRL	8	Unmodified	_EAHAKVRL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2744445800781	2	462.274701	922.534849	0.3822	0.00017668	-0.75468	-0.00034887	-0.37249	-0.00017219	462.2742970780849	21.55	1.0015	21.373	21.065	22.066	-0.17721					57	20	4	0	0	0	0.53523	1	688	688		82.305	8.3303	1	1516700			9376	2593	6276	6291	10991	10991					0.07048313228528968
EAHAKVRL	8	Unmodified	_EAHAKVRL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.27496337890625	2	462.274701	922.534849	-0.1111	-5.1359E-05	-0.19572	-9.0475E-05	-0.30682	-0.00014183	462.2745568909641	21.682	0.91201	21.491	21.177	22.089	-0.19072					49	18	4	0	0	0	0.74904	1	678	678		63.306	7.8021	1	1236500			9377	2593	6276	6291	10992	10992					0.07048313228528968
EAHAKVRL	8	Unmodified	_EAHAKVRL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2746276855469	2	462.274701	922.534849	-1.0297	-0.00047602	0.56759	0.00026238	-0.46213	-0.00021363	462.2749027572938	21.651	1.1072	21.438	21.167	22.275	-0.2128					55	22	4	0	0	0	0.53523	1	660	660		82.305	16.502	1	1444500			9378	2593	6276	6291	10993	10993					0.07048313228528968
EAHEQGKDI	9	Unmodified	_EAHEQGKDI_					0	0	0		ELP3-MYO5C|1|fusion;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ENST00000521938.5_1_8:27950677-27967964:+|nuORF	ELP3-MYO5C|1|fusion	ELP3-MYO5C|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7769775390625	2	513.74617	1025.47779	-0.22765	-0.00011696	0.58164	0.00029882	0.35399	0.00018186	513.7465303277357	25.385	0.79053	25.214	24.869	25.659	-0.17078					25	18	2	0	0	0	0.024427	1	1157	1157		26.693	11.828	1	166360			9379	703	6277	6292	10994	10994					-0.03393198838512035
EAHEQGKDI	9	Unmodified	_EAHEQGKDI_					0	0	0		ELP3-MYO5C|1|fusion;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ENST00000521938.5_1_8:27950677-27967964:+|nuORF	ELP3-MYO5C|1|fusion	ELP3-MYO5C|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.74617	1025.47779	-0.67535	-0.00034696	0.7751	0.00039821	0.099751	5.1247E-05	513.7465479196111	25.652	0.58129	25.426	25.231	25.812	-0.22683	0.11495	0.00013696	NaN	9.1829	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191320			9380	703	6277	6292							-0.03393198838512035
EAHEQGKDI	9	Unmodified	_EAHEQGKDI_					0	0	0		ELP3-MYO5C|1|fusion;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;ENST00000521938.5_1_8:27950677-27967964:+|nuORF	ELP3-MYO5C|1|fusion	ELP3-MYO5C|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.74617	1025.47779	-0.036413	-1.8707E-05	0.58082	0.00029839	0.54441	0.00027969	513.7464967363828	25.464	0.67384	25.292	25.034	25.708	-0.17151	-0.018407	-6.2667E-05	NaN	9.1829	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173640			9381	703	6277	6292							-0.03393198838512035
EAHHVWALT	9	Unmodified	_EAHHVWALT_					0	0	0			REV__nc|ENSG00000064205|O76076-2|CCN5	REV__nc|ENSG00000064205|O76076-2|CCN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7970581054688	2	532.269616	1062.52468	-1.8887	-0.0010053	-0.19973	-0.00010631	-2.0884	-0.0011116	532.7725224845403	90.896	0.25066	90.896	90.719	90.97	0					7	5	2	0	0	0	0.024405	1	11505	11505		35.618	14.671	1	39965	+		9382	36461	6278	6293	10995	10995					-0.004082944967422009
EAHISDEVFT	10	Unmodified	_EAHISDEVFT_					0	0	0		ENSG00000168828|ENST00000377981|OR13J1	ENSG00000168828|ENST00000377981|OR13J1	ENSG00000168828|ENST00000377981|OR13J1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7699584960938	2	574.266936	1146.51932	0.016342	9.3844E-06	0.78115	0.00044859	0.7975	0.00045798	574.2677883178364	101.26	2.1228	101.09	100.6	102.72	-0.17178					85	51	3	0	0	0	1.089	1	12542	12542		34.173	0.25091	1	114780			9383	7872	6279	6294	10996	10996					-0.04808062869847163
EAHISKPVIL	10	Unmodified	_EAHISKPVIL_					0	0	0		ENST00000467629.1_1_10:106054804-106059039:+|nuORF	ENST00000467629.1_1_10:106054804-106059039:+|nuORF	ENST00000467629.1_1_10:106054804-106059039:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.2828369140625	2	553.832049	1105.64954	-1.6531	-0.00091556	-2.3334	-0.0012923	-3.9865	-0.0022079	553.8306509125797	92.098	1.6452	91.955	91.617	93.262	-0.14356					87	38	3	0	0	0	0.03519	1	11483	11483		40.778	0	1	570180			9384	14847	6280	6295	10997	10997					0.10094577919812764
EAHRIQFYD	9	Unmodified	_EAHRIQFYD_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3448486328125	2	589.783087	1177.55162	-0.86832	-0.00051212	0.8345	0.00049218	-0.033816	-1.9944E-05	589.7840086800804	90.12	0.36096	90.104	89.999	90.36	-0.016708					12	8	2	0	0	0	0.024438	1	11389	11389		22.58	0	1	85598	+		9385	27701	6281	6296	10998	10998					-0.030052306761945147
EAHVQQFF	8	Unmodified	_EAHVQQFF_					0	0	0			REV__ENST00000555232.5_1_14:21538555-21549271:+|nuORF	REV__ENST00000555232.5_1_14:21538555-21549271:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.306884765625	2	503.243067	1004.47158	-0.42491	-0.00021383	-2.572	-0.0012944	-2.9969	-0.0015082	503.24136298701836	23.392	0.50689	23.212	22.929	23.436	-0.17989					23	11	3	0	0	0	0.027866	1	894	894		33.516	6.8227	1	66883	+		9386	35004	6282	6297	10999	10999					-0.030476722793764566
EAHVRAIAGI	10	Unmodified	_EAHVRAIAGI_					0	0	0			REV__ENSG00000157851|ENST00000288699|DPYSL5	REV__ENSG00000157851|ENST00000288699|DPYSL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2960205078125	2	518.79854	1035.58253	-0.19884	-0.00010316	0.98817	0.00051266	0.78933	0.0004095	518.7991127876005	78.617	0.64496	78.362	78.127	78.772	-0.25471					31	14	3	0	0	0	0.03519	1	9382	9382		20.947	5.3051	1	426080	+		9387	25153	6283	6298	11000	11000					0.06615967428706426
EAIDNVLAWI	10	Unmodified	_EAIDNVLAWI_					0	0	0		nc|ENSG00000150510|Q86V42-2|FAM124A;ENSG00000150510|ENST00000322475|FAM124A;nc|ENSG00000150510|Q86V42-3|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	nc|ENSG00000150510|Q86V42-2|FAM124A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	572.3101196289062	2	572.305864	1142.59717	0.02785	1.5938E-05	3.5676	0.0020418	3.5955	0.0020577	572.3075502848291	105.19	1.1875	105.19	104.65	105.84	0.00097656					59	40	3	0	0	0	0.69662	1	13470	13470		67.494	6.5217	1	429330			9388	6140	6284	6299	11001	11001					0.031579947861928304
EAIDRGNIL	9	Unmodified	_EAIDRGNIL_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MSMS	OPSCC_39_ClassI_Rep-1	1	500.77667236328125	2	500.774731	999.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.545	1	79.545	79.045	80.045	0								0	0	0	0.3606	1	9870	9870		64.207	0.901	1		+		9389	20808	6285	6300	11002	11002					0.03512268437862076
EAIDRGNIL	9	Unmodified	_EAIDRGNIL_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MSMS	OPSCC_39_ClassI_Rep-1	1	500.7767333984375	2	500.774731	999.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.623	1	79.623	79.123	80.123	0								0	0	0	0.052088	1	9881	9881		108.09	14.892	1		+		9390	20808	6285	6300	11003	11003					0.03512268437862076
EAIDRGNIL	9	Unmodified	_EAIDRGNIL_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.776611328125	2	500.774731	999.534909	-0.17999	-9.0132E-05	4.3218	0.0021643	4.1418	0.0020741	500.77677917196604	79.616	0.90974	79.635	79.192	80.101	0.018669					33	21	2	0	0	0	0.14024	2	9803	9793;9803		101.6	10.824	1	1266000	+		9391	20808	6285	6300	11004;11005	11005					0.03512268437862076
EAIDRGNIL	9	Unmodified	_EAIDRGNIL_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	500.774731	999.534909	-0.17999	-9.0132E-05	4.3218	0.0021643	4.1418	0.0020741	500.77677917196604	79.616	0.90974	79.635	79.192	80.101	0.018669	0.11106	0.00012924	NaN	101.6	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266000	+		9392	20808	6285	6300							0.03512268437862076
EAIDRGNIL	9	Unmodified	_EAIDRGNIL_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.774731	999.534909	0.66522	0.00033313	3.5322	0.0017688	4.1974	0.002102	500.7764227184067	79.659	0.75326	79.413	79.112	79.865	-0.2465	-0.11105	-0.00066161	NaN	101.6	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358110	+		9393	20808	6285	6300							0.03512268437862076
EAIDRGNIL	9	Unmodified	_EAIDRGNIL_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.774731	999.534909	0.17275	8.651E-05	3.8076	0.0019067	3.9803	0.0019932	500.77653422943416	79.636	0.70872	79.417	79.035	79.744	-0.21922	-0.10705	-0.00038582	NaN	101.6	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306850	+		9394	20808	6285	6300							0.03512268437862076
EAIDVTNKT	9	Unmodified	_EAIDVTNKT_					0	0	0			REV__ENSG00000230873|ENST00000536551|STMND1	REV__ENSG00000230873|ENST00000536551|STMND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.78460693359375	2	495.758746	989.50294	-0.37211	-0.00018447	-0.029557	-1.4653E-05	-0.40166	-0.00019913	495.7583694609313	32.674	0.57139	32.437	32.299	32.87	-0.23666					15	13	2	0	0	0	0.024025	1	2284	2284		52.937	2.9122	1	63943	+		9395	28896	6286	6301	11006	11006					0.007768559640339845
EAIELILTL	9	Unmodified	_EAIELILTL_					0	0	0		ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2999572753906	2	507.807708	1013.60086	-0.19983	-0.00010148	0.86032	0.00043688	0.66049	0.0003354	507.80780557904984	42.732	0.68597	42.732	42.389	43.075	0					28	18	2	0	0	0	0.024436	1	3915	3915		38.806	1.647	1	209020			9396	12561	6287	6302	11007	11007					0.0946066456006065
EAIGPYVC	8	Unmodified	_EAIGPYVC_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2460021972656	2	426.202021	850.38949	0.27688	0.00011801	-1.2482	-0.00053198	-0.97132	-0.00041398	426.20119036217284	86.98	0.33265	86.793	86.604	86.936	-0.18696					9	7	2	0	0	0	0.027866	1	10537	10537		26.796	0	1	65091	+		9397	22560	6288	6303	11008	11008					-0.04168910682687965
EAIGTYFEL	9	Unmodified	_EAIGTYFEL_					0	0	0			REV__ENST00000403633.6_1_7:99006457-99006505:+|nuORF	REV__ENST00000403633.6_1_7:99006457-99006505:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.30322265625	2	521.758215	1041.50188	-0.4514	-0.00023552	4.1987	0.0021907	3.7473	0.0019552	521.760507675672	82.284	0.55138	82.31	82.065	82.616	0.025711					22	12	2	0	0	0	0.024457	1	10235	10235		29.15	0	1	244790	+		9398	31894	6289	6304	11009	11009					-0.017213584048704433
EAIIRLLKREE	11	Unmodified	_EAIIRLLKREE_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.27685546875	3	457.276909	1368.8089	-0.27745	-0.00012687	-1.0805	-0.00049407	-1.3579	-0.00062094	457.276048875292	103.44	0.74582	103.31	103.05	103.79	-0.12783					38	17	3	0	0	0	1.0788	1	12879	12879		17.167	1.16	1	459500	+		9399	22509	6290	6305	11010	11010					0.13924666477123537
EAIISFIKP	9	Unmodified	_EAIISFIKP_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2756042480469	2	509.302593	1016.59063	0.31357	0.0001597	-0.090213	-4.5946E-05	0.22336	0.00011376	509.3023097830495	70.275	0.66315	70.275	70.081	70.744	0					41	18	3	0	0	0	0.024319	1	8534	8534		31.53	0	1	1237900	+		9400	20301	6291	6306	11011	11011					0.08300101625457046
EAIKFLVTW	9	Unmodified	_EAIKFLVTW_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7967529296875	2	553.815867	1105.61718	-0.15903	-8.8075E-05	-2.3862	-0.0013215	-2.5452	-0.0014096	553.8148521968183	80.537	0.41537	80.391	80.117	80.532	-0.146					13	9	2	0	0	0	0.024292	1	9649	9649		49.442	18.938	1	82746			9401	10789	6292	6307	11012	11012					0.06859790516796238
EAIKKKQW	8	Unmodified	_EAIKKKQW_					0	0	0			REV__ENST00000475124.1_1_3:53892553-53899332:+|nuORF	REV__ENST00000475124.1_1_3:53892553-53899332:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	515.8079223632812	2	515.805834	1029.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.715	1	66.491	65.991	66.991	-0.22374								0	0	0	1.3923	1	7670	7670		4.3163	0.33103	1		+		9402	20216	6293	6308	11013	11013					0.08350039576839663
EAIKMNLFI	9	Unmodified	_EAIKMNLFI_					0	0	0			REV__ENST00000555151.5_1_12:25348680-25348749:+|nuORF	REV__ENST00000555151.5_1_12:25348680-25348749:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7968139648438	2	539.801903	1077.58925	-0.36904	-0.00019921	-2.5898	-0.001398	-2.9588	-0.0015972	539.8000815017555	98.888	0.53191	98.898	98.736	99.268	0.010239					19	11	2	0	0	0	0.39228	1	12624	12624		66.429	2.222	1	40261	+		9403	35002	6294	6309	11014	11014					0.05356144265056173
EAIKNVGGLL	10	Unmodified	_EAIKNVGGLL_					0	0	0			REV__ENSG00000149651|ENST00000279058|SPINT4	REV__ENSG00000149651|ENST00000279058|SPINT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2740478515625	2	507.303124	1012.5917	-0.23744	-0.00012046	-0.38454	-0.00019508	-0.62198	-0.00031553	507.3027912705986	44.86	0.45742	44.896	44.681	45.138	0.0369					19	12	2	0	0	0	0.03519	1	4238	4238		37.812	7.4938	1	695510	+		9404	24694	6295	6310	11015	11015					0.08590315994399589
EAIKPLTVK	9	Unmodified	_EAIKPLTVK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.74578857421875	2	499.815867	997.617182	-0.32912	-0.0001645	0.12879	6.4372E-05	-0.20033	-0.00010013	499.8156154117447	41.101	0.61765	40.965	40.791	41.409	-0.13553					22	15	2	0	0	0	0.024541	1	3626	3626		15.642	0.77694	1	226160	+		9405	25910	6296	6311	11016	11016					0.11827790516804271
EAILEKLT	8	Unmodified	_EAILEKLT_					0	0	0		nc|ENSG00000197566|Q9P2J8-2|ZNF624;ENST00000579528.1_1_17:16525604-16527848:-|nuORF;ENSG00000197566|ENST00000311331|ZNF624	nc|ENSG00000197566|Q9P2J8-2|ZNF624	nc|ENSG00000197566|Q9P2J8-2|ZNF624	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7753601074219	2	458.771126	915.527698	1.3884	0.00063696	-0.27233	-0.00012494	1.1161	0.00051202	458.7708592395527	20.495	1.0839	20.564	20.119	21.202	0.068901					29	21	2	0	0	0	0.027866	1	559	559		11.511	0	1	23997			9406	10018	6297	6312	11017	11017					0.06655535837421667
EAILIFAM	8	Unmodified	_EAILIFAM_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2637634277344	2	454.251514	906.488476	-1.0473	-0.00047574	-2.88	-0.0013082	-3.9273	-0.001784	454.250125037687	21.633	0.43552	21.42	21.266	21.701	-0.2128					11	8	2	0	0	0	0.027866	1	664	664		28.254	7.7724	1	27497	+		9407	20534	6298	6313	11018	11018					0.031491122822103534
EAILKLILK	9	Unmodified	_EAILKLILK_					0	0	0		ENSG00000138138|ENST00000680024|ATAD1;nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENST00000579735.1_1_18:1362647-1362968:-|nuORF	ENSG00000138138|ENST00000680024|ATAD1	ENSG00000138138|ENST00000680024|ATAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8095092773438	2	520.857535	1039.70052	-0.4319	-0.00022496	-0.65312	-0.00034018	-1.085	-0.00056514	520.8571730651886	53.828	0.45458	53.681	53.566	54.02	-0.14723					17	12	2	0	0	0	0.024539	1	5819	5819		20.947	4.4738	1	185330			9408	5211	6299	6314	11019	11019					0.18225526964647543
EAILKRRQRYV	11	Unmodified	_EAILKRRQRYV_					0	0	0			REV__nc|ENSG00000180176|P07101-6|TH;REV__ENST00000381168.7_1_11:2187868-2190906:-|nuORF	REV__nc|ENSG00000180176|P07101-6|TH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7945861816406	3	477.956282	1430.84702	0.67304	0.00032168	-1.021	-0.00048799	-0.34795	-0.00016631	477.95562236792057	46.154	0.66479	46.154	45.714	46.378	0					37	18	3	0	0	0	0.02486	1	4479	4479		12.957	0.52465	1	521310	+		9409	27317;31509	6300	6315	11020	11020					0.14882597182463542
EAILKRRQRYV	11	Unmodified	_EAILKRRQRYV_					0	0	0			REV__nc|ENSG00000180176|P07101-6|TH;REV__ENST00000381168.7_1_11:2187868-2190906:-|nuORF	REV__nc|ENSG00000180176|P07101-6|TH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.79425048828125	3	477.956282	1430.84702	-0.69619	-0.00033275	0.37747	0.00018041	-0.31873	-0.00015234	477.95640645734983	46.216	0.69884	46.065	45.611	46.31	-0.15157					43	19	3	0	0	0	0.02477	1	4467	4467		28.577	15.069	1	389170	+		9410	27317;31509	6300	6315	11021	11021					0.14882597182463542
EAILTFNY	8	Unmodified	_EAILTFNY_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.74456787109375	2	485.74765	969.480748	-1.2979	-0.00063044	-3.9664	-0.0019267	-5.2643	-0.0025571	485.7454795824899	61.99	0.7301	62.053	61.542	62.272	0.062767					43	19	4	0	0	0	0.6248	1	7127	7127		73.975	2.0973	1	3871400	+		9411	24417	6301	6316	11022	11022					-0.00521323713712718
EAINGFNLF	9	Unmodified	_EAINGFNLF_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7714233398438	2	512.758549	1023.50255	0.99324	0.00050929	-1.8182	-0.0009323	-0.82496	-0.000423	513.2594125780544	19.976	0.29012	19.776	19.653	19.943	-0.2001					8	5	2	0	0	0	0.024477	1	478	478		35.618	26.796	1	21387			9412	2438	6302	6317	11023	11023					-0.008265189651410765
EAINGFNLF	9	Unmodified	_EAINGFNLF_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.758549	1023.50255	0.32412	0.0001662	-1.5686	-0.00080432	-1.2445	-0.00063812	512.7572100448775	19.505	0.37199	19.505	19.317	19.689	0	-0.16485	0.00076126	NaN	20.947	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53734			9413	2438	6302	6317							-0.008265189651410765
EAINGFNLF	9	Unmodified	_EAINGFNLF_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.758549	1023.50255	-0.28687	-0.0001471	-1.1505	-0.00058993	-1.4374	-0.00073702	512.7574660055063	19.758	0.52038	19.639	19.397	19.918	-0.11872	-0.030559	0.00119	NaN	20.947	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38884			9414	2438	6302	6317							-0.008265189651410765
EAINGFNLF	9	Unmodified	_EAINGFNLF_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.758549	1023.50255	1.8655	0.00095654	-3.5424	-0.0018164	-1.6769	-0.00085986	512.7565118446624	19.693	0.47942	19.759	19.587	20.067	0.066195	0.089232	-0.0012629	NaN	20.947	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59946			9415	2438	6302	6317							-0.008265189651410765
EAIQKAKIL	9	Unmodified	_EAIQKAKIL_					0	0	0		ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.78436279296875	2	507.321317	1012.62808	-0.36998	-0.0001877	0.61138	0.00031017	0.2414	0.00012247	507.32146122922825	73.687	0.80511	73.416	72.883	73.688	-0.27126					44	20	4	0	0	0	0.024427	1	8896	8896		34.173	6.2903	1	2352300			9416	2389	6303	6318	11024	11024					0.12227192891100458
EAIQKAKIL	9	Unmodified	_EAIQKAKIL_					0	0	0		ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7841796875	2	507.321317	1012.62808	-0.30946	-0.000157	0.49545	0.00025135	0.18599	9.4359E-05	507.32144614635394	73.377	0.86268	73.386	72.735	73.598	0.0096512					46	21	4	0	0	0	0.024466	1	8812	8812		31.53	4.8369	1	2306900			9417	2389	6303	6318	11025	11025					0.12227192891100458
EAIQRTPK	8	Unmodified	_EAIQRTPK_					0	0	0		B2M|p.N41Ffs*15|1|0.33|ENSG00000166710|chr15:44715475-44715476|AA/-|frameshift_variant;B2M|p.I27Nfs*30|1|0.25|ENSG00000166710|chr15:44715433-44715434|-/A|frameshift_variant;B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant;ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	B2M|p.N41Ffs*15|1|0.33|ENSG00000166710|chr15:44715475-44715476|AA/-|frameshift_variant	B2M|p.N41Ffs*15|1|0.33|ENSG00000166710|chr15:44715475-44715476|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.75604248046875	2	471.771991	941.529429	0.63193	0.00029813	-1.3672	-0.00064498	-0.73523	-0.00034686	471.77111194226995	42.517	0.54015	42.517	42.355	42.895	0					25	14	2	0	0	0	0.027866	1	3943	3943		42.396	3.59	1	322570			9418	171	6304	6319	11026	11026					0.05632589646040742
EAIRLYLGY	9	Unmodified	_EAIRLYLGY_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7158203125	2	549.303124	1096.5917	-0.6808	-0.00037397	0.19642	0.0001079	-0.48438	-0.00026607	549.3020293835648	43.731	0.66501	43.627	43.434	44.099	-0.10468					26	17	3	0	0	0	0.024487	1	4103	4103		40.573	13.88	1	220010			9419	9588	6305	6320	11027	11027					0.04726315994366814
EAIRLYLGY	9	Unmodified	_EAIRLYLGY_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.303124	1096.5917	-1.0166	-0.00055842	0.81753	0.00044907	-0.19908	-0.00010935	549.302528863682	43.876	0.52808	43.632	43.412	43.94	-0.2444	-0.017603	0.00030342	NaN	47.916	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239660			9420	9588	6305	6320							0.04726315994366814
EAIRLYLGY	9	Unmodified	_EAIRLYLGY_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.303124	1096.5917	-1.1162	-0.00061314	0.57916	0.00031813	-0.53706	-0.00029501	549.3025931165735	43.909	0.37533	43.69	43.525	43.9	-0.21939	0.040525	4.1544E-05	NaN	47.916	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287760			9421	9588	6305	6320							0.04726315994366814
EAISALVKL	9	Unmodified	_EAISALVKL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2844543457031	2	472.294768	942.574983	1.0016	0.00047305	-0.71036	-0.0003355	0.29124	0.00013755	472.294506935631	83.281	0.38434	83.191	83	83.385	-0.090454					13	8	2	0	0	0	0.024323	1	10396	10396		44.117	6.9577	1	81598			9422	3893	6306	6321	11028	11028					0.10139815108436778
EAITWFNV	8	Unmodified	_EAITWFNV_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.81207275390625	2	490.247818	978.481082	-1.0214	-0.00050073	-3.1528	-0.0015456	-4.1742	-0.0020464	490.2461473305578	25.708	0.33101	25.481	25.271	25.602	-0.22683					13	7	2	0	0	0	0.027866	1	1260	1260		12.207	5.4713	1	78629			9423	1428	6307	6322	11029	11029					-0.009019039938493734
EAIVFDVPPE	10	Unmodified	_EAIVFDVPPE_					0	0	0		ENSG00000170743|ENST00000318881|SYT9	ENSG00000170743|ENST00000318881|SYT9	ENSG00000170743|ENST00000318881|SYT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2593994140625	2	558.284597	1114.55464	0.31282	0.00017464	-3.4514	-0.0019269	-3.1386	-0.0017522	558.2824068107255	85.216	0.44783	85.02	84.681	85.129	-0.19508					12	10	2	0	0	0	0.03519	1	10310	10310		111.65	28.898	1	50259			9424	8072	6308	6323	11030	11030					0.0019459965794794698
EAIVFDVPPE	10	Unmodified	_EAIVFDVPPE_					0	0	0		ENSG00000170743|ENST00000318881|SYT9	ENSG00000170743|ENST00000318881|SYT9	ENSG00000170743|ENST00000318881|SYT9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.284597	1114.55464	-0.68529	-0.00038258	-7.6492	-0.0042704	-8.3345	-0.004653	558.7830658498748	85.194	0.28881	85.137	84.939	85.228	-0.05761	0.058059	-0.002782	NaN	111.65	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126700			9425	8072	6308	6323							0.0019459965794794698
EAIVLRVK	8	Unmodified	_EAIVLRVK_					0	0	0			REV__ENSG00000104381|ENST00000220822|GDAP1;REV__ENSG00000124194|ENST00000342560|GDAP1L1	REV__ENSG00000104381|ENST00000220822|GDAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2691955566406	2	464.302927	926.591301	0.53335	0.00024764	-0.30662	-0.00014236	0.22673	0.00010527	464.30262085157165	66.007	0.45943	66.037	65.699	66.159	0.030106					21	11	2	0	0	0	0.027866	1	7748	7748		31.955	0	1	288060	+		9426	21443;22744	6309	6324	11031	11031					0.12506941065191768
EAIWQSLF	8	Unmodified	_EAIWQSLF_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2535400390625	2	497.255643	992.496732	-0.071221	-3.5415E-05	-3.9994	-0.0019887	-4.0706	-0.0020242	497.25350026569885	49.605	0.70448	49.454	49.113	49.817	-0.1512					48	18	4	0	0	0	0.68535	1	5117	5117		68.485	2.5872	1	1780600	+		9427	28450	6310	6325	11032	11032					0.00018382523182935984
EAIWQSLF	8	Unmodified	_EAIWQSLF_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.255643	992.496732	0.741	0.00036847	-4.9049	-0.002439	-4.1639	-0.0020705	497.2531014796297	49.435	0.66438	49.435	49.141	49.805	0	0.0061112	-0.00076435	NaN	68.485	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1702900	+		9428	28450	6310	6325							0.00018382523182935984
EAIWQSLF	8	Unmodified	_EAIWQSLF_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	497.255643	992.496732	-0.071221	-3.5415E-05	-3.9994	-0.0019887	-4.0706	-0.0020242	497.25350026569885	49.605	0.70448	49.454	49.113	49.817	-0.1512	0.024682	0.00013611	NaN	68.485	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1780600	+		9429	28450	6310	6325							0.00018382523182935984
EAIWQSLF	8	Unmodified	_EAIWQSLF_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.255643	992.496732	-1.3493	-0.00067093	-2.6499	-0.0013177	-3.9992	-0.0019886	497.2541852774459	49.324	0.59813	49.398	49.133	49.731	0.074196	-0.030793	0.0014782	NaN	68.485	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1825300	+		9430	28450	6310	6325							0.00018382523182935984
EAKAKGLVI	9	Unmodified	_EAKAKGLVI_					0	0	0		ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7563781738281	2	464.794935	927.575317	0.024586	1.1428E-05	0.57134	0.00026556	0.59593	0.00027698	464.7950756056088	29.431	0.44401	29.509	29.202	29.646	0.078344					15	10	2	0	0	0	0.022924	1	1757	1757		44.117	0	1	93428			9431	4137	6311	6326	11033	11033					0.10863234828264012
EAKAKLSKP	9	Unmodified	_EAKAKLSKP_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7896423339844	2	486.297842	970.581131	-1.1416	-0.00055516	1.2103	0.00058854	0.068638	3.3378E-05	486.2983616007676	55.065	0.59863	55.164	54.733	55.332	0.098015					34	16	3	0	0	0	0.024257	1	5947	5947		33.922	2.3918	1	5180100	+		9432	27807	6312	6327	11034	11034					0.09466333339946686
EAKAKLSKP	9	Unmodified	_EAKAKLSKP_					0	0	0			REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	REV__nc|ENSG00000185917|Q9NVD3-3|SETD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.297842	970.581131	0.44465	0.00021623	-0.33972	-0.00016521	0.10492	5.1024E-05	486.2976957540048	55.22	0.63278	55.22	54.831	55.464	0	0.028151	-0.00069628	NaN	33.922	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4460800	+		9433	27807	6312	6327							0.09466333339946686
EAKANEEELD	10	Unmodified	_EAKANEEELD_					0	0	0			REV__MAP9|p.K316N|1|0.15|ENSG00000164114|chr4:155360270-155360270|C/A|missense_variant	REV__MAP9|p.K316N|1|0.15|ENSG00000164114|chr4:155360270-155360270|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7825927734375	2	574.259308	1146.50406	-0.65852	-0.00037816	-1.4618	-0.00083944	-2.1203	-0.0012176	574.2579637514324	64.74	0.15714	64.538	64.42	64.577	-0.20254					5	3	2	0	0	0	0.03519	1	7356	7356		40.058	0	1	31854	+		9434	36352	6313	6328	11035	11035					-0.0633297445772314
EAKAPTPPAPL	11	Unmodified	_EAKAPTPPAPL_					0	0	0			REV__ENSG00000119574|ENST00000594051|ZBTB45	REV__ENSG00000119574|ENST00000594051|ZBTB45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7645874023438	2	546.308406	1090.60226	-0.64628	-0.00035307	1.1146	0.00060891	0.4683	0.00025584	546.3089557009588	67.584	1.2643	67.296	66.911	68.176	-0.28835					31	19	2	0	0	0	0.024814	1	8052	8052		53.089	0	1	740710	+		9435	22465	6314	6329	11036	11036					0.060582986487816015
EAKARCVP	8	Unmodified	_EAKARCVP_					0	0	0		ENST00000530149.1_1_11:212820-213114:+|nuORF	ENST00000530149.1_1_11:212820-213114:+|nuORF	ENST00000530149.1_1_11:212820-213114:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.5292663574219	2	437.234187	872.453822	-0.4168	-0.00018224	-0.42023	-0.00018374	-0.83703	-0.00036598	437.23373418531446	31.033	1.882	30.792	30.287	32.169	-0.24109					88	45	4	0	0	0	0.027866	1	2180	2180		17.365	0	1	281630			9436	16224	6315	6330	11037	11037					0.012492891941064954
EAKAYKQID	9	Unmodified	_EAKAYKQID_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7139282226562	2	533.282389	1064.55022	0.28597	0.0001525	3.0184	0.0016097	3.3044	0.0017622	533.2839288942727	85.638	0.84854	85.489	85.072	85.92	-0.14967					24	19	2	0	0	0	0.024427	1	10437	10437		26.693	0	1	132930			9437	6304	6316	6331	11038	11038					0.02053135235018999
EAKDPTQKP	9	Unmodified	_EAKDPTQKP_					0	0	0		nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF;ENST00000479196.1_1_2:73308605-73315425:-|nuORF	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.30303955078125	2	507.266739	1012.51892	0.12515	6.3487E-05	3.5611	0.0018064	3.6862	0.0018699	507.2686475710624	57.132	0.42627	56.93	56.783	57.21	-0.20208					20	11	2	0	0	0	0.024477	1	6217	6217		27.882	0	1	375840			9438	4915	6317	6332	11039	11039					0.013165622009410072
EAKDYHLMPE	10	Unmodified	_EAKDYHLMPE_					0	0	0		ENSG00000114648|ENST00000232766|KLHL18;nc|ENSG00000114648|O94889-2|KLHL18;ENST00000461084.5_1_3:47324437-47378284:+|nuORF	ENSG00000114648|ENST00000232766|KLHL18	ENSG00000114648|ENST00000232766|KLHL18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.89862060546875	3	411.525384	1231.55432	0.89141	0.00036684	-0.2575	-0.00010597	0.63392	0.00026087	411.52525491460966	18.527	0.29722	18.371	18.148	18.445	-0.15637					9	5	2	0	0	0	0.03519	1	302	302		16.007	0.67366	1	45914			9439	3373	6318	6333	11040	11040					-0.05219143333533793
EAKEPLLQDT	10	Unmodified	_EAKEPLLQDT_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2643432617188	2	572.298236	1142.58192	0.39421	0.00022561	-2.0831	-0.0011922	-1.6889	-0.00096656	572.2971896274985	76.907	0.50917	76.655	76.314	76.823	-0.25163					19	11	2	0	0	0	0.03519	1	9141	9141		35.152	17.787	1	88535			9440	6555	6319	6334	11041	11041					0.016330831983168537
EAKERKKR	8	Unmodified	_EAKERKKR_					0	0	0		CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant;ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.263427734375	2	522.817264	1043.61998	-0.0095788	-5.0079E-06	2.2781	0.001191	2.2685	0.001186	522.8182514772694	53.876	0.59644	53.631	53.383	53.98	-0.2453					37	18	3	0	0	0	0.027866	1	5729	5729		17.365	0	1	1869900			9441	206	6320	6335	11042	11042					0.09991058694299682
EAKGAFFQF	9	Unmodified	_EAKGAFFQF_					0	0	0		ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2803955078125	2	522.761092	1043.50763	-0.8009	-0.00041868	-3.422	-0.0017889	-4.2229	-0.0022076	522.7592753013033	38.47	0.6725	38.388	38.116	38.788	-0.082516					36	17	3	0	0	0	0.024021	1	3239	3239		68.787	10.976	1	1398500			9442	11002	6321	6336	11043	11043					-0.01238215102534923
EAKGAFFQF	9	Unmodified	_EAKGAFFQF_					0	0	0		ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2803955078125	2	522.761092	1043.50763	-1.4513	-0.00075866	-2.5815	-0.0013495	-4.0327	-0.0021081	522.7596244368286	38.661	0.74482	38.688	38.429	39.174	0.027275					41	19	3	0	0	0	0.024263	1	3226	3226		51.335	0.14276	1	1080100			9443	11002	6321	6336	11044	11044					-0.01238215102534923
EAKHAGFA	8	Unmodified	_EAKHAGFA_					0	0	0			REV__ENSG00000111049|ENST00000228644|MYF5	REV__ENSG00000111049|ENST00000228644|MYF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.7098388671875	2	415.711402	829.408252	-0.83536	-0.00034727	-3.931	-0.0016342	-4.7664	-0.0019814	415.7097107306702	26.257	2.915	26.021	25.803	28.718	-0.23603					131	72	3	0	0	0	0.96719	2	1337	1337;1362		42.474	6.8562	1	12481000	+		9444	21890	6322	6337	11045;11046	11045					-0.013276129966243388
EAKHAGFA	8	Unmodified	_EAKHAGFA_					0	0	0			REV__ENSG00000111049|ENST00000228644|MYF5	REV__ENSG00000111049|ENST00000228644|MYF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.70977783203125	2	415.711402	829.408252	-0.76262	-0.00031703	-3.9965	-0.0016614	-4.7591	-0.0019784	415.7097228923088	26.126	2.4926	25.963	25.457	27.95	-0.16331					138	63	4	0	0	0	0.81662	3	1282	1261;1282;1318		57.811	19.005	1	18466000	+		9445	21890	6322	6337	11047;11048;11049	11048					-0.013276129966243388
EAKHVWECL	9	Unmodified	_EAKHVWECL_					0	0	0		ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.2977294921875	2	557.771134	1113.52771	0.034453	1.9217E-05	-4.175	-0.0023287	-4.1406	-0.0023095	557.7686926933305	74.775	0.66322	74.516	74.201	74.864	-0.25887					23	15	3	0	0	0	0.024292	1	9143	9143		49.442	17.487	1	123390			9446	2600	6323	6338	11050	11050					-0.0245078743423619
EAKHVWECL	9	Unmodified	_EAKHVWECL_					0	0	0		ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.771134	1113.52771	1.5136	0.00084426	-6.2526	-0.0034875	-4.739	-0.0026433	557.767366535785	74.48	0.3774	74.48	74.298	74.676	0	-0.035567	-0.0017669	NaN	49.442	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86017			9447	2600	6323	6338							-0.0245078743423619
EAKHVWECL	9	Unmodified	_EAKHVWECL_					0	0	0		ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	ENSG00000104808|ENST00000221403|DHDH	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.771134	1113.52771	-0.35462	-0.0001978	-4.5501	-0.0025379	-4.9048	-0.0027357	557.7683936496887	74.542	0.37676	74.552	74.355	74.731	0.0096512	0.035758	0.00013229	NaN	49.442	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107320			9448	2600	6323	6338							-0.0245078743423619
EAKITEVKV	9	Unmodified	_EAKITEVKV_					0	0	0		nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.8066101074219	2	508.802957	1015.59136	-0.68907	-0.0003506	0.76309	0.00038826	0.07402	3.7662E-05	508.8034820890463	34.705	0.75608	34.705	34.408	35.164	0					32	19	3	0	0	0	0.024205	1	2582	2582		53.351	0	1	216950			9449	6110	6324	6339	11051	11051					0.08418896274520193
EAKKKEPVD	9	Unmodified	_EAKKKEPVD_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2841186523438	2	522.290214	1042.56587	-1.8123	-0.00094656	4.2534	0.0022215	2.4411	0.001275	522.7941117692608	37.791	0.46969	37.791	37.632	38.102	0					20	13	2	0	0	0	0.024292	1	3132	3132		58.782	11.125	1	2464800	+		9450	21457	6325	6340	11052	11052					0.04629421752088092
EAKKKEPVD	9	Unmodified	_EAKKKEPVD_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7933959960938	2	522.290214	1042.56587	-0.83475	-0.00043598	1.3304	0.00069487	0.49568	0.00025889	522.2901545581767	37.935	0.76569	37.717	37.384	38.15	-0.21849					55	21	5	0	0	0	0.48817	1	3061	3061		60.118	1.3363	1	3021000	+		9451	21457	6325	6340	11053	11053					0.04629421752088092
EAKKRILN	8	Unmodified	_EAKKRILN_					0	0	0		nc|ENSG00000091831|P03372-4|ESR1	nc|ENSG00000091831|P03372-4|ESR1	nc|ENSG00000091831|P03372-4|ESR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8370361328125	2	486.303458	970.592364	-0.16398	-7.9742E-05	-0.45125	-0.00021944	-0.61523	-0.00029919	486.30285267395027	33.739	0.40027	33.51	33.316	33.716	-0.22905					15	9	2	0	0	0	0.027866	1	2418	2418		12.207	0	1	78984			9452	18112	6326	6341	11054	11054					0.10589155434092845
EAKLHDAIY	9	Unmodified	_EAKLHDAIY_					0	0	0			REV__nc|ENSG00000101204|P43681-2|CHRNA4	REV__nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2770385742188	2	530.277106	1058.53966	0.59699	0.00031657	-1.188	-0.00062999	-0.59106	-0.00031342	530.2766320210427	58.835	1.0862	58.593	58.173	59.259	-0.24165					81	26	5	0	0	0	0.35646	1	6461	6461		68.787	4.5796	1	15720000	+		9453	21200	6327	6342	11055	11055					0.012731525806202626
EAKLPEKL	8	Unmodified	_EAKLPEKL_					0	0	0			REV__nc|ENSG00000168843|Q8N475-3|FSTL5	REV__nc|ENSG00000168843|Q8N475-3|FSTL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2803039550781	2	464.279118	926.543683	0.81775	0.00037966	-1.3939	-0.00064715	-0.57614	-0.00026749	464.2788391564568	50.168	0.75558	50.249	49.989	50.744	0.08099					84	22	6	0	0	0	0.68164	1	5186	5186		68.787	2.9837	1	4655000	+		9454	26298	6328	6343	11056	11056					0.07747242074333371
EAKLTRVQ	8	Unmodified	_EAKLTRVQ_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7781677246094	2	472.779816	943.545079	-0.32382	-0.00015309	-0.15927	-7.53E-05	-0.48309	-0.00022839	472.7796155129647	23.768	0.86946	23.707	23.47	24.339	-0.060862					32	19	2	0	0	0	0.027866	1	1045	1045		32.812	0	1	833330	+		9455	28872	6329	6344	11057	11057					0.07104876163089102
EAKLVKVK	8	Unmodified	_EAKLVKVK_					0	0	0			REV__ENSG00000160877|ENST00000292431|NACC1	REV__ENSG00000160877|ENST00000292431|NACC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2663269042969	2	457.805303	913.596052	-0.44428	-0.0002034	1.6247	0.0007438	1.1804	0.0005404	457.80605915809343	28.476	0.57914	28.324	28.203	28.782	-0.15195					26	13	3	0	0	0	0.027866	1	1667	1667		15.642	4.1308	1	265960	+		9456	25356	6330	6345	11058	11058					0.13579825207932572
EAKMCLLKSF	10	Unmodified	_EAKMCLLKSF_					0	0	0			REV__BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	REV__BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	585.2401123046875	2	585.306495	1168.59844	-1.6153	-0.00094543	1.6739	0.00097974	0.058616	3.4308E-05	585.3073476285334	38.567	0.85228	38.485	38.182	39.034	-0.082516					56	22	4	0	0	0	0.03519	1	3291	3291		42.864	7.246	1	1130600	+		9457	19202	6331	6346	11059	11059					0.02088169559101516
EAKMCLLKSF	10	Unmodified	_EAKMCLLKSF_					0	0	0			REV__BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	REV__BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	585.240966796875	2	585.306495	1168.59844	-0.58613	-0.00034306	0.42475	0.00024861	-0.16138	-9.4456E-05	585.3066104958012	38.863	0.85219	38.89	38.572	39.424	0.027279					55	22	3	0	0	0	0.03519	1	3317	3317		51.193	14.034	1	1061800	+		9458	19202	6331	6346	11060	11060					0.02088169559101516
EAKNNQTVL	9	Unmodified	_EAKNNQTVL_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7721862792969	2	508.772188	1015.52982	-0.54006	-0.00027477	2.0837	0.0010601	1.5436	0.00078533	508.77200365050044	33.945	1.2	33.945	33.626	34.826	0					58	30	3	0	0	0	0.23085	1	2477	2477		84.916	8.1414	1	5734900	+		9459	20748	6332	6347	11061	11061					0.02267964575219139
EAKNNQTVL	9	Unmodified	_EAKNNQTVL_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.77264404296875	2	508.772188	1015.52982	-0.36652	-0.00018647	1.7749	0.00090304	1.4084	0.00071656	508.7719296100509	33.808	1.2357	33.803	33.178	34.414	-0.0045624					85	32	4	0	0	0	0.16468	3	2433	2433;2443;2456		96.19	22.216	1	6076200	+		9460	20748	6332	6347	11062;11063;11064	11062					0.02267964575219139
EAKNNQTVL	9	Unmodified	_EAKNNQTVL_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7724609375	2	508.772188	1015.52982	-0.25531	-0.0001299	2.5592	0.0013021	2.3039	0.0011722	508.7718344331151	33.71	1.2646	33.766	33.423	34.688	0.056572					138	31	7	0	0	0	0.16468	3	2383	2383;2392;2405		96.19	24.313	1	5716200	+		9461	20748	6332	6347	11065;11066;11067	11065					0.02267964575219139
EAKQQKEIK	9	Unmodified	_EAKQQKEIK_					0	0	0			REV__nc|ENSG00000184672|Q86SE5-3|RALYL	REV__nc|ENSG00000184672|Q86SE5-3|RALYL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3168334960938	2	551.316763	1100.61897	-0.19044	-0.00010499	0.066302	3.6554E-05	-0.12414	-6.8439E-05	551.316644988916	24.66	0.52461	24.486	24.252	24.777	-0.17484					29	11	5	0	0	0	0.32064	1	1105	1105		72.879	5.3856	1	648660	+		9462	27692	6333	6348	11068	11068					0.07268799534745085
EAKQQKEIK	9	Unmodified	_EAKQQKEIK_					0	0	0			REV__nc|ENSG00000184672|Q86SE5-3|RALYL	REV__nc|ENSG00000184672|Q86SE5-3|RALYL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.316763	1100.61897	-0.42762	-0.00023576	-0.065779	-3.6265E-05	-0.4934	-0.00027202	551.3166116799118	24.871	0.56831	24.644	24.407	24.975	-0.22663	0.06622	8.2389E-05	NaN	72.879	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	760270	+		9463	27692	6333	6348							0.07268799534745085
EAKQQKEIK	9	Unmodified	_EAKQQKEIK_					0	0	0			REV__nc|ENSG00000184672|Q86SE5-3|RALYL	REV__nc|ENSG00000184672|Q86SE5-3|RALYL	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	551.316763	1100.61897	-0.19044	-0.00010499	0.066302	3.6554E-05	-0.12414	-6.8439E-05	551.316644988916	24.66	0.52461	24.486	24.252	24.777	-0.17484	-0.092231	0.00022803	NaN	72.879	29	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	648660	+		9464	27692	6333	6348							0.07268799534745085
EAKQQKEIK	9	Unmodified	_EAKQQKEIK_					0	0	0			REV__nc|ENSG00000184672|Q86SE5-3|RALYL	REV__nc|ENSG00000184672|Q86SE5-3|RALYL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	551.316763	1100.61897	1.8296	0.0010087	-2.9457	-0.001624	-1.1161	-0.0006153	551.3153983100733	24.785	0.8274	24.604	24.156	24.983	-0.18089	0.026012	-0.0030931	NaN	72.879	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595620	+		9465	27692	6333	6348							0.07268799534745085
EAKQRLQQL	9	Unmodified	_EAKQRLQQL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7;ENST00000496129.1_1_7:22857608-22862419:-|nuORF;ENST00000463284.2_1_7:22852718-22862419:-|nuORF	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3224487304688	2	557.32238	1112.63021	-1.3961	-0.00077809	1.1378	0.00063412	-0.25832	-0.00014397	557.3229442960704	29.019	0.78116	28.774	28.448	29.229	-0.24524					50	17	4	0	0	0	0.067814	2	1746	1736;1746		122.18	24.283	1	2284500			9466	9911	6334	6349	11069;11070	11070					0.07839621628886562
EAKQRLQQL	9	Unmodified	_EAKQRLQQL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7;ENST00000496129.1_1_7:22857608-22862419:-|nuORF;ENST00000463284.2_1_7:22852718-22862419:-|nuORF	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3225708007812	2	557.32238	1112.63021	-0.46778	-0.0002607	0.096416	5.3735E-05	-0.37136	-0.00020697	557.3223672893353	28.879	0.77945	28.71	28.424	29.203	-0.16897					50	17	4	0	0	0	0.043667	2	1721	1711;1721		131.03	29.431	1	2015000			9467	9911	6334	6349	11071;11072	11072					0.07839621628886562
EAKQRLQQL	9	Unmodified	_EAKQRLQQL_					0	0	0		ENSG00000196683|ENST00000358435|TOMM7;ENST00000496129.1_1_7:22857608-22862419:-|nuORF;ENST00000463284.2_1_7:22852718-22862419:-|nuORF	ENSG00000196683|ENST00000358435|TOMM7	ENSG00000196683|ENST00000358435|TOMM7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.3220825195312	2	557.32238	1112.63021	-0.59049	-0.0003291	0.29427	0.000164	-0.29622	-0.00016509	557.3224616341885	28.87	0.72762	28.721	28.444	29.171	-0.14952					46	16	4	0	0	0	0.043667	2	1703	1692;1703		131.03	29.431	1	2301100			9468	9911	6334	6349	11073;11074	11074					0.07839621628886562
EAKRLYKSN	9	Unmodified	_EAKRLYKSN_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.8094482421875	2	554.809105	1107.60366	-0.92312	-0.00051216	-0.29289	-0.0001625	-1.216	-0.00067466	554.8088772094743	46.049	0.90938	45.847	45.563	46.472	-0.20226					58	24	5	0	0	0	0.6504	1	4386	4386		49.442	5.0644	1	9753800			9469	5741	6335	6350	11075	11075					0.0541593273756007
EAKRPFLASA	10	Unmodified	_EAKRPFLASA_					0	0	0			REV__ENST00000557989.1_1_15:30114845-30115226:+|nuORF	REV__ENST00000557989.1_1_15:30114845-30115226:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2332153320312	2	545.306198	1088.59784	-1.8608	-0.0010147	1.1447	0.00062422	-0.7161	-0.00039049	545.3065004749193	29.742	0.77119	29.742	29.487	30.258	0					36	18	3	0	0	0	0.03519	1	1845	1845		40.778	0	1	224500	+		9470	35085	6336	6351	11076	11076					0.057088342259021374
EAKTCFRKM	9	Oxidation (M)	_EAKTCFRKM(Oxidation (M))_		EAKTCFRKM(1)		EAKTCFRKM(110)	0	0	1		ENSG00000166432|ENST00000651725|ZMAT1;nc|ENSG00000166432|Q5H9K5|ZMAT1;nc|ENSG00000166432|Q5H9K5-2|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.2804565429688	2	565.278269	1128.54198	0.16823	9.5098E-05	2.2474	0.0012704	2.4157	0.0013655	565.2794180524378	47.531	1.1961	47.262	46.662	47.858	-0.26939					90	32	4	0	0	0	0.10174	2	4637	4637;4662		110.12	31.856	1	4975200			9471	7557	6337	6352	11077;11078	11077		312			-0.01714458277592712
EAKTCFRKM	9	Oxidation (M)	_EAKTCFRKM(Oxidation (M))_		EAKTCFRKM(1)		EAKTCFRKM(110)	0	0	1		ENSG00000166432|ENST00000651725|ZMAT1;nc|ENSG00000166432|Q5H9K5|ZMAT1;nc|ENSG00000166432|Q5H9K5-2|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.27978515625	2	565.278269	1128.54198	-0.20491	-0.00011583	2.4599	0.0013905	2.255	0.0012747	565.2795145435401	47.309	0.97683	47.115	46.577	47.554	-0.19387					81	26	4	0	0	0	0.10174	3	4608	4608;4618;4631		110.12	30.669	1	5046400			9472	7557	6337	6352	11079;11080;11081	11079		312			-0.01714458277592712
EAKTCFRKM	9	Oxidation (M)	_EAKTCFRKM(Oxidation (M))_					0	0	1		ENSG00000166432|ENST00000651725|ZMAT1;nc|ENSG00000166432|Q5H9K5|ZMAT1;nc|ENSG00000166432|Q5H9K5-2|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.278269	1128.54198	-0.76072	-0.00043002	2.9116	0.0016458	2.1508	0.0012158	565.279812839705	47.543	0.41738	47.543	47.361	47.779	0	0.12766	0.0004202	NaN	110.12	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434300			9473	7557	6337	6352				312			-0.01714458277592712
EAKTCFRKM	9	Oxidation (M)	_EAKTCFRKM(Oxidation (M))_					0	0	1		ENSG00000166432|ENST00000651725|ZMAT1;nc|ENSG00000166432|Q5H9K5|ZMAT1;nc|ENSG00000166432|Q5H9K5-2|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.278269	1128.54198	-0.40416	-0.00022847	2.709	0.0015313	2.3048	0.0013028	565.2796478241949	47.752	0.52602	47.599	47.3	47.827	-0.15301	0.18392	0.00019114	NaN	110.12	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440090			9474	7557	6337	6352				312			-0.01714458277592712
EAKTCFRKM	9	Oxidation (M)	_EAKTCFRKM(Oxidation (M))_					0	0	1		ENSG00000166432|ENST00000651725|ZMAT1;nc|ENSG00000166432|Q5H9K5|ZMAT1;nc|ENSG00000166432|Q5H9K5-2|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	ENSG00000166432|ENST00000651725|ZMAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.278269	1128.54198	-1.5231	-0.00086095	3.558	0.0020113	2.035	0.0011503	565.2802272817472	47.499	0.3892	47.558	47.319	47.708	0.059097	0.1427	0.001151	NaN	110.12	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432800			9475	7557	6337	6352				312			-0.01714458277592712
EAKVAKRLG	9	Unmodified	_EAKVAKRLG_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.30596923828125	2	486.303458	970.592364	0.1609	7.8244E-05	2.7649	0.0013446	2.9258	0.0014228	486.30473320464193	73.114	0.8673	72.838	72.511	73.379	-0.27613					57	21	4	0	0	0	0.53979	1	8884	8884		56.721	3.3696	1	1708700	+		9476	20535	6338	6353	11082	11082					0.10589155434092845
EAKVAQLKAY	10	Unmodified	_EAKVAQLKAY_					0	0	0			REV__ENST00000488341.5_1_2:26174656-26179274:-|nuORF	REV__ENST00000488341.5_1_2:26174656-26179274:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.3140258789062	2	560.821681	1119.62881	0.44973	0.00025222	0.81191	0.00045534	1.2616	0.00070756	560.8216031975812	71.427	1.0292	71.138	70.546	71.575	-0.28858					33	17	3	0	0	0	0.03519	1	8543	8543		49.442	10.189	1	310150	+		9477	20739	6339	6354	11083	11083					0.07377987540144204
EAKVRHPL	8	Unmodified	_EAKVRHPL_					0	0	0		ENSG00000107738|ENST00000394957|VSIR	ENSG00000107738|ENST00000394957|VSIR	ENSG00000107738|ENST00000394957|VSIR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7926940917969	2	475.282526	948.550499	0.35142	0.00016702	-4.2588	-0.0020241	-3.9074	-0.0018571	475.28162028316837	50.11	0.66995	50.11	49.842	50.512	0					35	19	3	0	0	0	0.027866	1	5253	5253		31.955	7.7521	1	1318100			9478	2850	6340	6355	11084	11084					0.07416599745567964
EAKVTEKQA	9	Unmodified	_EAKVTEKQA_					0	0	0			REV__nc|ENSG00000159023|P11171-2|EPB41	REV__nc|ENSG00000159023|P11171-2|EPB41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7539367675781	2	502.274564	1002.53457	-0.4642	-0.00023315	2.3032	0.0011569	1.839	0.0009237	502.27574610550454	25.982	1.4557	25.982	25.285	26.741	0					49	34	3	0	0	0	0.021513	1	1326	1326		93.195	34.414	1	318720	+		9479	25228	6341	6356	11085	11085					0.03340848718005418
EAKVTEKQA	9	Unmodified	_EAKVTEKQA_					0	0	0			REV__nc|ENSG00000159023|P11171-2|EPB41	REV__nc|ENSG00000159023|P11171-2|EPB41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7542419433594	2	502.274564	1002.53457	0.22271	0.00011186	1.7408	0.00087438	1.9636	0.00098625	502.2754422558597	25.868	1.3271	25.948	25.215	26.542	0.08009					55	31	3	0	0	0	0.022482	1	1236	1236		104.06	2.8042	1	292280	+		9480	25228	6341	6356	11086	11086					0.03340848718005418
EAKWPQAM	8	Unmodified	_EAKWPQAM_					0	0	0			REV__ENST00000320230.9_1_11:796095-796233:-|nuORF	REV__ENST00000320230.9_1_11:796095-796233:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7312927246094	2	480.73402	959.453487	-0.37385	-0.00017972	-3.9247	-0.0018867	-4.2985	-0.0020664	480.7321405153963	31.237	3.3748	31.306	29.359	32.734	0.068962					202	83	4	0	0	0	0.845	2	1993	1993;2051		55.504	4.0726	1	10183000	+		9481	30330	6342	6357	11087;11088	11087					-0.02786130525748831
EALAALSFF	9	Unmodified	_EALAALSFF_					0	0	0			REV__nc|ENSG00000114439|Q8WY36-2|BBX	REV__nc|ENSG00000114439|Q8WY36-2|BBX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.74578857421875	2	484.758018	967.501483	0.01275	6.1807E-06	0.029898	1.4493E-05	0.042648	2.0674E-05	484.757872614484	62.283	0.39202	62.025	61.743	62.135	-0.25824					13	9	2	0	0	0	0.024	1	6992	6992		55.504	0	1	91890	+		9482	22122	6343	6358	11089	11089					0.01643266665939791
EALAARVQ	8	Unmodified	_EALAARVQ_					0	0	0		sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.2296142578125	2	429.245609	856.476666	0.65258	0.00028012	-0.64156	-0.00027538	0.011021	4.7309E-06	429.2452909885513	42.957	0.65736	42.988	42.609	43.267	0.030823					34	17	3	0	0	0	0.027866	1	3883	3883		44.117	8.4985	1	358190			9483	37921	6344	6359	11090	11090					0.04268631583227034
EALAGAAPHSL	11	Unmodified	_EALAGAAPHSL_					0	0	0		ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;ENSG00000164808|ENST00000297423|SPIDR	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3075561523438	2	518.774731	1035.53491	-0.35043	-0.0001818	-0.98064	-0.00050873	-1.3311	-0.00069053	518.7740165571797	49.282	0.43161	49.13	48.935	49.366	-0.15277					22	11	2	0	0	0	0.024649	1	5050	5050		71.877	34.718	1	593700			9484	7323	6345	6360	11091	11091					0.018562684378366612
EALAGFLFE	9	Unmodified	_EALAGFLFE_					0	0	0			REV__ENSG00000133422|ENST00000397641|MORC2	REV__ENSG00000133422|ENST00000397641|MORC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.77215576171875	2	498.755475	995.496398	-0.18128	-9.0413E-05	1.8003	0.00089789	1.619	0.00080747	498.7559228482318	24.605	0.3005	24.43	24.21	24.511	-0.17484					9	6	2	0	0	0	0.024436	1	1060	1060		38.806	5.2906	1	45678	+		9485	23371	6346	6361	11092	11092					-0.0015303719667372206
EALAGGTLPL	10	Unmodified	_EALAGGTLPL_					0	0	0			REV__ENST00000377710.9_1_20:17949590-17949680:+|nuORF	REV__ENST00000377710.9_1_20:17949590-17949680:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.26861572265625	2	471.26875	940.522947	0.073094	3.4447E-05	0.16323	7.6927E-05	0.23633	0.00011137	471.268761887639	66.945	1.3116	66.945	66.519	67.831	0					88	32	5	0	0	0	0.96965	1	7954	7954		49.442	4.9105	1	7614600	+		9486	31382	6347	6362	11093	11093					0.0503065169467618
EALARNLL	8	Unmodified	_EALARNLL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2693786621094	2	450.269084	898.523616	-0.0059127	-2.6623E-06	0.0062606	2.819E-06	0.00034793	1.5666E-07	450.2689731566364	51.943	0.93951	51.824	51.54	52.48	-0.11876					57	24	4	0	0	0	0.21202	2	5371	5371;5384		138.48	0	1	2762000			9487	1738	6348	6363	11094;11095	11094					0.07029491134380805
EALARNLL	8	Unmodified	_EALARNLL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2687683105469	2	450.269084	898.523616	-1.8662	-0.00084031	1.7907	0.00080628	-0.075568	-3.4026E-05	450.26979469104555	52.194	0.90186	51.925	51.691	52.593	-0.26904					69	23	5	0	0	0	0.21202	2	5388	5388;5400		138.48	0	1	2769500			9488	1738	6348	6363	11096;11097	11096					0.07029491134380805
EALARNLL	8	Unmodified	_EALARNLL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.26885986328125	2	450.269084	898.523616	0.097843	4.4056E-05	-0.27639	-0.00012445	-0.17854	-8.0393E-05	450.26884784577805	52.091	0.95523	51.907	51.561	52.516	-0.18404					55	24	3	0	0	0	0.15369	1	5389	5389		148.21	0	1	2573600			9489	1738	6348	6363	11098	11098					0.07029491134380805
EALCELMCL	9	2 Carbamidomethyl (C)	_EALC(Carbamidomethyl (C))ELMC(Carbamidomethyl (C))L_	EALC(1)ELMC(1)L		EALC(97)ELMC(97)L		0	2	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7486572265625	2	569.750695	1137.48684	-0.3311	-0.00018864	-2.65	-0.0015098	-2.9811	-0.0016985	569.7491241451817	69.95	0.90935	69.683	69.327	70.237	-0.26725					68	21	4	0	0	0	0.15889	1	8151	8151		97.473	6.696	1	7267900			9490	9160	6349	6364	11099	11099	115;116				-0.07640632860352525
EALCFPCSLA	10	Carbamidomethyl (C)	_EALC(Carbamidomethyl (C))FPCSLA_	EALC(0.999)FPC(0.001)SLA		EALC(31)FPC(-31)SLA		0	1	0		ENST00000304385.7_1_4:153548048-153548159:-|nuORF	ENST00000304385.7_1_4:153548048-153548159:-|nuORF	ENST00000304385.7_1_4:153548048-153548159:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7807006835938	2	555.751553	1109.48855	0.20747	0.0001153	0.2287	0.0001271	0.43617	0.0002424	555.7513794183872	74.5	0.6398	74.237	74.01	74.65	-0.26326					27	14	3	0	0	0	0.03519	1	8798	8798		66.429	8.1994	2	632150			9491	11977	6350	6365	11100	11100	164				-0.06181255780097672
EALDYRCI	8	Unmodified	_EALDYRCI_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7693786621094	2	491.73676	981.458967	0.37563	0.00018471	2.2719	0.0011172	2.6475	0.0013019	491.7377541561216	42.026	0.42958	42.026	41.758	42.187	0					20	12	2	0	0	0	0.027866	1	3850	3850		53.351	7.3995	1	140870	+		9492	20967	6351	6366	11101	11101					-0.03250451733936188
EALENIRTI	9	Unmodified	_EALENIRTI_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.3270874023438	2	529.795663	1057.57677	-0.32941	-0.00017452	4.0089	0.0021239	3.6795	0.0019494	529.7976593846572	74.99	1.2229	74.731	74.451	75.674	-0.25887					66	31	3	0	0	0	0.024283	1	9121	9121		56.434	10.482	1	1312600			9493	749	6352	6367	11102	11102					0.05028824126384279
EALERQRV	8	Unmodified	_EALERQRV_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7656555175781	2	500.780348	999.546142	0.14788	7.4057E-05	-3.7773	-0.0018916	-3.6295	-0.0018176	500.77843784558365	74.384	1.3968	74.125	73.78	75.177	-0.25887					48	33	2	0	0	0	0.027866	1	9061	9061		40.573	0	1	191720	+		9494	27175	6353	6368	11103	11103					0.04635090531996866
EALEWLIRETQ	11	Unmodified	_EALEWLIRETQ_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.7457275390625	3	463.245386	1386.71433	-0.12757	-5.9095E-05	0.84866	0.00039314	0.72109	0.00033404	463.24594088522565	41.441	0.56876	41.305	41.099	41.668	-0.13554					22	14	3	0	0	0	0.024823	1	3667	3667		7.6794	0	1	128840			9495	2875	6354	6369	11104	11104					0.03644107935133434
EALFIVDPY	9	Unmodified	_EALFIVDPY_					0	0	0			REV__ENSG00000127989|ENST00000351870|MTERF1	REV__ENSG00000127989|ENST00000351870|MTERF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7737426757812	2	533.776408	1065.53826	0.18634	9.9463E-05	-3.988	-0.0021287	-3.8017	-0.0020292	533.7743324061715	50.858	1.1744	50.678	50.353	51.527	-0.18071					71	30	4	0	0	0	0.72875	1	5209	5209		44.117	1.7207	1	3110800	+		9496	22957	6355	6370	11105	11105					0.008115184918551677
EALFSRINL	9	Unmodified	_EALFSRINL_					0	0	0		nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;ENST00000543928.5_1_2:231090559-231103146:+|nuORF;nc|ENSG00000079263|Q13342-4|SP140;nc|ENSG00000079263|Q13342-2|SP140	nc|ENSG00000079263|Q13342-3|SP140	nc|ENSG00000079263|Q13342-3|SP140	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7991943359375	2	531.800749	1061.58694	-0.46321	-0.00024634	-2.9988	-0.0015948	-3.462	-0.0018411	531.7988227596488	101.68	1.9656	101.69	100.74	102.71	0.0085068					63	45	2	0	0	0	0.26966	1	12958	12958		79.713	2.866	1	356710			9497	1656	6356	6371	11106	11106					0.058614318515992636
EALGLLPAEP	10	Unmodified	_EALGLLPAEP_					0	0	0			REV__ENSG00000170684|ENST00000303809|ZNF296	REV__ENSG00000170684|ENST00000303809|ZNF296	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.26715087890625	2	505.281857	1008.54916	-0.56815	-0.00028708	-0.099136	-5.0092E-05	-0.66729	-0.00033717	505.2816819931633	45.048	0.35104	44.795	44.63	44.981	-0.25252					14	8	2	0	0	0	0.03519	1	4247	4247		26.693	11.828	1	254510	+		9498	26496	6357	6372	11107	11107					0.045229208661339726
EALGLLPAEP	10	Unmodified	_EALGLLPAEP_					0	0	0			REV__ENSG00000170684|ENST00000303809|ZNF296	REV__ENSG00000170684|ENST00000303809|ZNF296	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.281857	1008.54916	-0.86018	-0.00043463	-1.2966	-0.00065515	-2.1568	-0.0010898	505.2815671285647	44.836	0.43428	44.736	44.472	44.906	-0.099449	-0.0448	-0.00096115	NaN	26.693	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230990	+		9499	26496	6357	6372							0.045229208661339726
EALGPPLSLGL	11	Unmodified	_EALGPPLSLGL_					0	0	0			REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3206176757812	2	533.810782	1065.60701	0.22569	0.00012048	3.9962	0.0021332	4.2219	0.0022537	533.8124537900023	96.604	0.74794	96.61	96.353	97.101	0.0065079					28	16	3	0	0	0	0.024351	1	12259	12259		79.713	40.46	1	360160	+		9500	19313	6358	6373	11108	11108					0.07683182791583931
EALGTGTDI	9	Unmodified	_EALGTGTDI_					0	0	0		ENST00000526352.5_1_11:6621466-6622302:-|nuORF	ENST00000526352.5_1_11:6621466-6622302:-|nuORF	ENST00000526352.5_1_11:6621466-6622302:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.771240234375	2	438.71909	875.423627	-0.49812	-0.00021854	3.0913	0.0013562	2.5931	0.0011377	438.7202808360015	22.993	0.36911	22.808	22.6	22.969	-0.18539					11	7	2	0	0	0	0.024381	1	835	835		29.15	22.837	1	43410			9501	16119	6359	6374	11109	11109					-0.019067909900741142
EALHGRGP	8	Unmodified	_EALHGRGP_					0	0	0			REV__ENST00000578846.5_1_17:80015993-80016652:-|nuORF	REV__ENST00000578846.5_1_17:80015993-80016652:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.85107421875	2	418.722301	835.43005	0.14335	6.0026E-05	1.7906	0.00074975	1.9339	0.00080978	418.7231125866253	30.81	0.50468	30.658	30.341	30.846	-0.15231					18	11	2	0	0	0	0.027866	1	1954	1954		30.504	22.813	1	195240	+		9502	35493	6360	6375	11110	11110					0.005751917519546623
EALIQNLDN	9	Unmodified	_EALIQNLDN_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3237915039062	2	515.264196	1028.51384	-0.57738	-0.0002975	0.13739	7.0791E-05	-0.43999	-0.00022671	515.264108907601	41.105	0.35555	41.128	40.899	41.254	0.023006					17	9	2	0	0	0	0.024319	1	3608	3608		47.657	5.2612	1	158300			9503	3480	6361	6376	11111	11111					0.0007225833833217621
EALIQNLDN	9	Unmodified	_EALIQNLDN_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.264196	1028.51384	-0.10416	-5.3668E-05	0.10392	5.3547E-05	-0.00023448	-1.2082E-07	515.2638996391639	40.961	0.38874	40.961	40.764	41.153	0	-0.083464	-2.4333E-05	NaN	58.23	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167770			9504	3480	6361	6376							0.0007225833833217621
EALIRTLAM	9	Unmodified	_EALIRTLAM_					0	0	0			REV__ENSG00000179774|ENST00000373673|ATOH7	REV__ENSG00000179774|ENST00000373673|ATOH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.290283203125	2	509.291702	1016.56885	-0.4903	-0.00024971	-3.4028	-0.001733	-3.8931	-0.0019827	509.2901040479188	52.106	0.89329	51.987	51.468	52.361	-0.11876					57	23	3	0	0	0	0.56934	1	5408	5408		54.776	7.119	1	1691800	+		9505	27291	6362	6377	11112	11112					0.06122973605260995
EALKKQLKV	9	Unmodified	_EALKKQLKV_					0	0	0			REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.281494140625	2	528.842416	1055.67028	-1.1635	-0.00061533	-4.0375	-0.0021352	-5.201	-0.0027505	528.8405743938084	62.043	0.61753	61.865	61.536	62.154	-0.17781					26	15	3	0	0	0	0.024523	1	6980	6980		29.15	2.4566	1	537540	+		9506	37018	6363	6378	11113	11113					0.14467168299461264
EALKKRTAI	9	Unmodified	_EALKKRTAI_					0	0	0			REV__ENSG00000282757|ENST00000633875|DUXB	REV__ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2967529296875	2	515.324391	1028.63423	-0.24183	-0.00012462	-0.010985	-5.661E-06	-0.25282	-0.00013028	515.3242597570005	36.549	0.7481	36.344	36.091	36.839	-0.20518					37	18	3	0	0	0	0.024381	1	2921	2921		21.96	6.3181	1	843190	+		9507	29239	6364	6379	11114	11114					0.1210571112260368
EALKKVKDI	9	Unmodified	_EALKKVKDI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.3259887695312	2	522.326599	1042.63865	-0.89105	-0.00046542	0.55964	0.00029231	-0.33141	-0.0001731	522.3267463267001	81.884	1.9625	81.884	81.218	83.18	0					117	46	3	0	0	0	0.18994	1	10236	10236		90.601	13.283	1	890740			9508	4485	6365	6380	11115	11115					0.11903175545512568
EALKKVKDI	9	Unmodified	_EALKKVKDI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3258666992188	2	522.326599	1042.63865	0.47842	0.00024989	-0.7963	-0.00041593	-0.31788	-0.00016604	522.326023782232	82.159	1.7501	82.049	81.359	83.109	-0.11006					111	41	3	0	0	0	0.20652	1	10213	10213		88.177	26.07	1	889650			9509	4485	6365	6380	11116	11116					0.11903175545512568
EALKQALEL	9	Unmodified	_EALKQALEL_					0	0	0			REV__ENSG00000172732|ENST00000308110|MUS81	REV__ENSG00000172732|ENST00000308110|MUS81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2812805175781	2	507.795132	1013.57571	0.25406	0.00012901	-0.47556	-0.00024149	-0.2215	-0.00011248	507.79475707411524	84.177	0.86221	84.039	83.758	84.62	-0.13789					29	19	3	0	0	0	0.020937	1	10186	10186		58.23	0	1	550790	+		9510	26701	6366	6381	11117	11117					0.06946609757460465
EALKVLVKL	9	Unmodified	_EALKVLVKL_					0	0	0			REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8309631347656	2	506.841885	1011.66922	0.06592	3.3411E-05	-0.31333	-0.00015881	-0.24741	-0.0001254	506.8415121964384	46.557	0.53027	46.461	46.259	46.789	-0.096649					32	14	3	0	0	0	0.024418	1	4544	4544		45.972	0	1	1164000	+		9511	25680	6367	6382	11118	11118					0.16384953930560187
EALLALLQG	9	Unmodified	_EALLALLQG_					0	0	0			REV__nc|ENSG00000132153|Q7L2E3-3|DHX30	REV__nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2789611816406	2	464.279118	926.543683	-0.76344	-0.00035445	1.173	0.00054462	0.40961	0.00019017	464.27964296126913	81.18	1.7865	81.049	80.195	81.982	-0.13075					76	43	3	0	0	0	0.4752	1	10092	10092		60.972	0	1	3145900	+		9512	23255	6368	6383	11119	11119					0.0774724207434474
EALLFLPEI	9	Unmodified	_EALLFLPEI_					0	0	0			REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.8023071289062	2	522.802426	1043.5903	0.59174	0.00030936	-0.56448	-0.00029511	0.027264	1.4254E-05	522.8020295785374	97.06	1.5574	96.924	96.263	97.82	-0.13671					116	34	4	0	0	0	0.18915	1	12014	12014		90.777	5.4172	1	2308700	+		9513	19843	6369	6384	11120	11120					0.07024681905591024
EALLFLPEI	9	Unmodified	_EALLFLPEI_					0	0	0			REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.8025512695312	2	522.802426	1043.5903	1.0938	0.00057183	-1.1571	-0.00060491	-0.063282	-3.3084E-05	522.8017479620929	97.019	1.637	96.896	96.351	97.988	-0.12369					121	37	5	0	0	0	0.18915	1	11991	11991		90.777	0	1	2366800	+		9514	19843	6369	6384	11121	11121					0.07024681905591024
EALLLRSLP	9	Unmodified	_EALLLRSLP_					0	0	0			REV__ENST00000594688.1_1_19:42929068-42929311:+|nuORF	REV__ENST00000594688.1_1_19:42929068-42929311:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.82745361328125	2	506.313492	1010.61243	0.07283	3.6875E-05	-0.998	-0.0005053	-0.92517	-0.00046843	506.31274009372424	67.27	0.81989	67.294	67.152	67.972	0.023911					36	20	3	0	0	0	0.024427	1	7994	7994		34.173	0	1	690960	+		9515	35770	6370	6385	11122	11122					0.1075490637402936
EALLPSSPTL	10	Unmodified	_EALLPSSPTL_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;ENST00000546997.1_1_14:105676890-105678659:-|nuORF;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8046264648438	2	514.28714	1026.55973	-0.37629	-0.00019352	-0.52209	-0.0002685	-0.89838	-0.00046202	514.2870387066395	58.241	0.5107	58.332	58.05	58.561	0.091217					18	13	2	0	0	0	0.03519	1	6496	6496		45.972	0	1	132810			9516	9400	6371	6386	11123	11123					0.04750903520562133
EALLRELEV	9	Unmodified	_EALLRELEV_					0	0	0		nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.832763671875	2	536.305864	1070.59717	-0.56403	-0.00030249	1.2285	0.00065886	0.66449	0.00035637	536.3063465932154	78.309	1.1133	78.153	77.784	78.897	-0.15592					38	25	3	0	0	0	0.024288	1	9340	9340		71.877	32.625	1	198280			9517	8308	6372	6387	11124	11124					0.06469994786198185
EALLRYVL	8	Unmodified	_EALLRYVL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000534767.1_1_11:43919588-43920434:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.795166015625	2	488.794935	975.575317	-0.14957	-7.3111E-05	0.27582	0.00013482	0.12625	6.1709E-05	488.7949077400923	71.085	0.65417	70.813	70.493	71.147	-0.27185					29	14	3	0	0	0	0.33369	1	8285	8285		106.42	26.476	1	1234900			9518	4363	6373	6388	11125	11125					0.08655234828268021
EALLRYVL	8	Unmodified	_EALLRYVL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000534767.1_1_11:43919588-43920434:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.7952880859375	2	488.794935	975.575317	0.050056	2.4467E-05	0.24215	0.00011836	0.29221	0.00014283	488.79485174366806	70.97	0.63559	70.713	70.528	71.164	-0.25713					30	14	3	0	0	0	0.33369	1	8288	8288		106.42	26.476	1	1151500			9519	4363	6373	6388	11126	11126					0.08655234828268021
EALLRYVL	8	Unmodified	_EALLRYVL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000534767.1_1_11:43919588-43920434:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7948913574219	2	488.794935	975.575317	0.80493	0.00039345	-0.7922	-0.00038722	0.012735	6.225E-06	488.7944659426021	70.927	0.91335	70.713	70.461	71.374	-0.21425					36	21	3	0	0	0	0.53523	1	8255	8255		82.305	2.3658	1	1146200			9520	4363	6373	6388	11127	11127					0.08655234828268021
EALLTKLPE	9	Unmodified	_EALLTKLPE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2953796386719	2	507.297507	1012.58046	0.17411	8.8327E-05	-2.9117	-0.0014771	-2.7376	-0.0013888	507.2959247911687	18.209	0.54043	18.077	17.712	18.253	-0.13148					29	10	4	0	0	0	0.84115	1	260	260		36.447	3.6343	1	262090	+		9521	25017	6374	6389	11128	11128					0.07467493900242061
EALLVGDAID	10	Unmodified	_EALLVGDAID_					0	0	0			REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2999572753906	2	508.268947	1014.52334	0.086697	4.4066E-05	2.6533	0.0013486	2.74	0.0013927	508.7721756856855	42.413	0.20858	42.413	42.289	42.497	0					7	5	2	0	0	0	0.03519	1	3915	3915		40.778	1.5253	1	186350	+		9522	20365	6375	6390	11129	11129					0.016660266238432087
EALMAAKID	9	Unmodified	_EALMAAKID_					0	0	0			REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.3136291503906	2	481.254785	960.495018	0.21049	0.0001013	2.2672	0.0010911	2.4777	0.0011924	481.2547650773922	68.296	0.75871	68.315	67.967	68.726	0.018921					40	19	3	0	0	0	0.024511	1	8157	8157		19.104	0	1	110820	+		9523	28368	6376	6391	11130	11130					0.01319005442917387
EALMDQKNL	9	Unmodified	_EALMDQKNL_					0	0	0			REV__nc|ENSG00000141404|P38405-3|GNAL	REV__nc|ENSG00000141404|P38405-3|GNAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3046875	2	531.268424	1060.5223	-0.25646	-0.00013625	-2.5815	-0.0013715	-2.838	-0.0015077	531.2669566272453	58.202	0.54136	58.024	57.859	58.4	-0.17776					19	12	2	0	0	0	0.024017	1	6392	6392		56.434	0	1	910360	+		9524	24080	6377	6392	11131	11131					-0.005545110166849554
EALMWAEE	8	Unmodified	_EALMWAEE_					0	0	0		PLEKHG4|p.T567M|1|0.15|ENSG00000196155|chr16:67284720-67284720|C/T|missense_variant	PLEKHG4|p.T567M|1|0.15|ENSG00000196155|chr16:67284720-67284720|C/T|missense_variant	PLEKHG4|p.T567M|1|0.15|ENSG00000196155|chr16:67284720-67284720|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.27691650390625	2	489.715493	977.416433	0.43429	0.00021268	3.1419	0.0015386	3.5761	0.0017513	489.7169270119059	76.844	0.38325	76.592	76.399	76.782	-0.25162					14	8	2	0	0	0	0.027866	1	9110	9110		30.504	0	1	73733			9525	18973	6378	6393	11132	11132					-0.07317846862167698
EALNENLPE	9	Unmodified	_EALNENLPE_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.281005859375	2	514.748379	1027.4822	-0.96978	-0.00049919	-2.9202	-0.0015032	-3.89	-0.0020024	515.2505433965792	83.566	0.25574	83.566	83.393	83.649	0					7	5	2	0	0	0	0.024025	1	10438	10438		44.377	0	1	53766			9526	9617	6379	6394	11133	11133					-0.030437344156325707
EALNVLPPD	9	Unmodified	_EALNVLPPD_					0	0	0		nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF	nc|ENSG00000110619|P49589|CARS1	nc|ENSG00000110619|P49589|CARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7900390625	2	484.258382	966.502212	-0.45158	-0.00021868	1.1584	0.00056095	0.70679	0.00034227	484.2584695086558	46.052	0.4094	46.103	45.83	46.239	0.051395					14	11	2	0	0	0	0.024292	1	4452	4452		32.812	4.9302	1	124030			9527	3050	6380	6395	11134	11134					0.017620613149915698
EALPFFLLL	9	Unmodified	_EALPFFLLL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7984008789062	2	531.815336	1061.61612	-0.4239	-0.00022544	-1.1005	-0.00058527	-1.5244	-0.00081071	531.8165919803735	98.536	0.67718	98.536	98.19	98.867	0					20	15	2	0	0	0	0.023775	1	12632	12632		79.939	0	1	113150			9528	3265	6381	6396	11135	11135					0.08777576147895161
EALPFFLLL	9	Unmodified	_EALPFFLLL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.815336	1061.61612	0.34408	0.00018299	0.15874	8.4419E-05	0.50282	0.00026741	532.3164826122149	98.558	0.67542	98.554	98.18	98.855	-0.0038834	0.05635	0.00065938	NaN	79.939	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88982			9529	3265	6381	6396							0.08777576147895161
EALPKQSV	8	Unmodified	_EALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.2478942871094	2	436.247818	870.481082	-0.059311	-2.5874E-05	0.12648	5.5177E-05	0.067171	2.9303E-05	436.2478232636943	34.152	1.607	33.928	33.485	35.092	-0.22412					107	40	4	0	0	0	0.2677	2	2488	2488;2513		125.81	7.2094	1	8890900			9530	5836	6382	6397	11136;11137	11136					0.040660960061472906
EALPKQSV	8	Unmodified	_EALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.2480163574219	2	436.247818	870.481082	-0.19557	-8.5319E-05	0.31037	0.0001354	0.1148	5.008E-05	436.24787409794766	34.122	1.2608	33.915	33.511	34.771	-0.20696					84	31	4	0	0	0	0.2677	4	2487	2465;2475;2487;2513		125.81	7.2094	1	8826400			9531	5836	6382	6397	11138;11139;11140;11141	11140					0.040660960061472906
EALPKQSV	8	Unmodified	_EALPKQSV_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.2480773925781	2	436.247818	870.481082	-0.63886	-0.0002787	0.53996	0.00023556	-0.098903	-4.3146E-05	436.248019222092	34.091	1.3776	33.916	33.469	34.846	-0.17557					94	34	4	0	0	0	0.17959	4	2459	2459;2469;2481;2496		143.89	9.076	1	9163300			9532	5836	6382	6397	11142;11143;11144;11145	11142					0.040660960061472906
EALQRRLN	8	Unmodified	_EALQRRLN_					0	0	0		nc|ENSG00000105983|Q8WVP7-3|LMBR1;ENSG00000105983|ENST00000353442|LMBR1;ENST00000477983.1_1_7:156526850-156555826:-|nuORF;ENST00000434503.5_1_7:156480878-156685794:-|nuORF	nc|ENSG00000105983|Q8WVP7-3|LMBR1;ENST00000434503.5_1_7:156480878-156685794:-|nuORF	nc|ENSG00000105983|Q8WVP7-3|LMBR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7660827636719	2	500.28834	998.562127	0.061431	3.0733E-05	3.4671	0.0017345	3.5285	0.0017653	500.2898604408159	36.933	0.76663	36.869	36.432	37.198	-0.063385					35	19	2	0	0	0	0.027866	1	2902	2902		30.504	20.238	1	315320			9533	2743;14246	6383	6398	11146	11146					0.06278796768890516
EALRKHKV	8	Unmodified	_EALRKHKV_					0	0	0		nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	nc|ENSG00000121274|Q8NDF8-5|TENT4B	nc|ENSG00000121274|Q8NDF8-5|TENT4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.802490234375	2	490.803626	979.592698	0.83335	0.00040901	-0.62693	-0.0003077	0.20641	0.00010131	490.80305793052366	17.438	0.35011	17.284	17.057	17.408	-0.15403					13	6	3	0	0	0	0.94517	1	182	182		45.952	8.7928	1	123600			9534	18222	6384	6399	11147	11147					0.10208575153944821
EALRLKEQL	9	Unmodified	_EALRLKEQL_					0	0	0			REV__ENSG00000174450|ENST00000567107|GOLGA6L2	REV__ENSG00000174450|ENST00000567107|GOLGA6L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.328125	2	550.327131	1098.63971	-0.65209	-0.00035886	-0.0075451	-4.1523E-06	-0.65963	-0.00036301	550.3270581023166	52.08	1.2686	51.933	51.642	52.91	-0.14735					90	33	5	0	0	0	0.51662	1	5566	5566		58.246	6.7185	1	11448000	+		9535	26864	6385	6400	11148	11148					0.09433389914443069
EALRRQLL	8	Unmodified	_EALRRQLL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.80950927734375	2	499.808908	997.603263	-0.53927	-0.00026953	0.12758	6.3765E-05	-0.41169	-0.00020577	499.80893599705723	38.081	1.0831	37.902	37.63	38.713	-0.17929					83	30	4	0	0	0	0.75307	2	3118	3118;3133		62.978	7.4742	1	11666000			9536	2053	6386	6401	11149;11150	11149					0.10436557808372982
EALRRQLL	8	Unmodified	_EALRRQLL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.8086242675781	2	499.808908	997.603263	-0.86347	-0.00043157	0.4057	0.00020277	-0.45777	-0.0002288	499.809071667659	38.135	1.0039	37.914	37.649	38.653	-0.22149					85	27	4	0	0	0	0.85409	2	3111	3111;3124		54.765	2.4655	1	12379000			9537	2053	6386	6401	11151;11152	11151					0.10436557808372982
EALRRQLL	8	Unmodified	_EALRRQLL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.80865478515625	2	499.808908	997.603263	-1.0124	-0.00050601	0.52983	0.00026482	-0.48257	-0.00024119	499.809154195003	38.16	1.097	37.942	37.681	38.778	-0.21849					84	30	4	0	0	0	0.68535	2	3100	3100;3112		68.485	12.98	1	12643000			9538	2053	6386	6401	11153;11154	11153					0.10436557808372982
EALSGEFDVV	10	Unmodified	_EALSGEFDVV_					0	0	0			REV__nc|ENSG00000204410|O43196-4|MSH5	REV__nc|ENSG00000204410|O43196-4|MSH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.2794189453125	2	533.258579	1064.50261	-0.46324	-0.00024703	-1.7439	-0.00092994	-2.2071	-0.001177	533.2570415820351	67.487	0.93657	67.487	67.01	67.947	0					73	23	5	0	0	0	0.03519	1	8120	8120		26.693	5.746	1	597490	+		9539	37078	6387	6402	11155	11155					-0.027065637558052913
EALSGEFDVV	10	Unmodified	_EALSGEFDVV_					0	0	0			REV__nc|ENSG00000204410|O43196-4|MSH5	REV__nc|ENSG00000204410|O43196-4|MSH5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.258579	1064.50261	-0.3901	-0.00020802	-2.6911	-0.0014351	-3.0812	-0.0016431	533.2571963945107	67.754	0.60174	67.466	67.108	67.71	-0.28835	-0.029629	-0.00025904	NaN	26.693	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293740	+		9540	37078	6387	6402							-0.027065637558052913
EALSGEFDVV	10	Unmodified	_EALSGEFDVV_					0	0	0			REV__nc|ENSG00000204410|O43196-4|MSH5	REV__nc|ENSG00000204410|O43196-4|MSH5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.258579	1064.50261	-0.20298	-0.00010824	-2.6655	-0.0014214	-2.8684	-0.0015296	533.2571938923875	67.51	0.55589	67.534	67.23	67.786	0.023911	0.03797	-0.00023169	NaN	26.693	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257750	+		9541	37078	6387	6402							-0.027065637558052913
EALSLLAH	8	Unmodified	_EALSLLAH_					0	0	0		ENSG00000103227|ENST00000262301|LMF1;ENST00000569516.5_1_16:904534-921479:-|nuORF;nc|ENSG00000103227|Q96S06-2|LMF1	ENSG00000103227|ENST00000262301|LMF1	ENSG00000103227|ENST00000262301|LMF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2537536621094	2	427.242535	852.470518	-0.63223	-0.00027011	3.7684	0.00161	3.1362	0.0013399	427.2444272324277	23.225	0.16584	23.225	23.079	23.245	0					5	3	2	0	0	0	0.027866	1	893	893		26.796	0	1	76137			9542	2484	6388	6403	11156	11156					0.038381133517077615
EALSPACPRL	10	Unmodified	_EALSPACPRL_					0	0	0			REV__TNK2|p.Q606E|1|0.33|ENSG00000061938|chr3:195868437-195868437|G/C|missense_variant	REV__TNK2|p.Q606E|1|0.33|ENSG00000061938|chr3:195868437-195868437|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2532348632812	2	528.778959	1055.54336	-0.17317	-9.1569E-05	-1.9555	-0.001034	-2.1287	-0.0011256	528.7769725598022	36.202	0.1377	35.985	35.913	36.05	-0.21661					5	3	2	0	0	0	0.03519	1	2802	2802		26.693	0	1	62081	+		9543	37714	6389	6404	11157	11157					0.017814990828355803
EALSRSALLP	10	Unmodified	_EALSRSALLP_					0	0	0		nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7960205078125	2	528.806031	1055.59751	-0.26762	-0.00014152	-0.056697	-2.9982E-05	-0.32432	-0.0001715	528.805940186408	63.524	0.67857	63.273	62.766	63.444	-0.25141					39	17	3	0	0	0	0.03519	1	7362	7362		42.864	0	1	1702500			9544	4428	6390	6405	11158	11158					0.07193414506036788
EALTETTLR	9	Unmodified	_EALTETTLR_					0	0	0		ENST00000590268.1_1_19:55602842-55603850:-|nuORF;nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C	ENST00000590268.1_1_19:55602842-55603850:-|nuORF	ENST00000590268.1_1_19:55602842-55603850:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.28076171875	2	517.279846	1032.54514	-0.24243	-0.0001254	1.4711	0.00076099	1.2287	0.00063558	517.2804429704213	33.889	0.71228	33.665	33.321	34.033	-0.22412					37	17	3	0	0	0	0.72494	1	2460	2460		44.377	7.2181	1	744250			9545	4112	6391	6406	11159	11159					0.03016831372406159
EALTLRLL	8	Unmodified	_EALTLRLL_					0	0	0			REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.26922607421875	2	464.794935	927.575317	-0.053946	-2.5074E-05	0.33825	0.00015722	0.28431	0.00013214	464.79491570162156	66.287	0.42311	66.006	65.75	66.173	-0.28149					21	10	3	0	0	0	0.027866	1	7855	7855		55.504	5.4797	1	638010	+		9546	36760	6392	6407	11160	11160					0.1086323482828675
EALVARKVF	9	Unmodified	_EALVARKVF_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2566528320312	2	516.813659	1031.61277	0.00083515	4.3162E-07	-0.22032	-0.00011386	-0.21949	-0.00011343	516.8130909537164	81.597	1.3222	81.467	81.339	82.661	-0.13075					36	31	2	0	0	0	0.023239	1	10186	10186		74.255	2.9593	1	89955	+		9547	36888	6393	6408	11161	11161					0.09822326093899392
EALVARKVF	9	Unmodified	_EALVARKVF_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.813659	1031.61277	-0.6888	-0.00035598	0.41435	0.00021414	-0.27445	-0.00014184	516.8138042043229	81.525	0.36934	81.525	81.382	81.751	0	0.090437	0.00016577	NaN	74.255	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90038	+		9548	36888	6393	6408							0.09822326093899392
EALVARKVF	9	Unmodified	_EALVARKVF_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.813659	1031.61277	-1.1206	-0.00057913	0.70465	0.00036417	-0.41592	-0.00021495	516.8141157995071	81.437	0.52851	81.461	81.288	81.817	0.023911	0.02635	0.00046583	NaN	74.255	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127630	+		9549	36888	6393	6408							0.09822326093899392
EALVARKVF	9	Unmodified	_EALVARKVF_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.813659	1031.61277	0.32053	0.00016565	-0.23878	-0.0001234	0.081755	4.2252E-05	516.8132823883689	81.479	0.45488	81.286	81.05	81.505	-0.19334	-0.14864	-0.00050932	NaN	74.255	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61225	+		9550	36888	6393	6408							0.09822326093899392
EALVGLAANVG	11	Unmodified	_EALVGLAANVG_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12767171-12772081:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7646179199219	2	507.284931	1012.55531	0.012016	6.0955E-06	1.1079	0.000562	1.1199	0.0005681	507.28534238586985	39.503	0.7319	39.503	39.183	39.915	0					37	20	2	0	0	0	0.024771	1	3347	3347		60.118	6.7668	1	416320			9551	2598	6394	6409	11162	11162					0.04953439097664614
EALVLLADLV	10	Unmodified	_EALVLLADLV_					0	0	0			REV__nc|ENSG00000122986|Q96D96-2|HVCN1	REV__nc|ENSG00000122986|Q96D96-2|HVCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7937622070312	2	528.320983	1054.62741	0.71447	0.00037747	-3.1812	-0.0016807	-2.4667	-0.0013032	528.3192852161918	36.983	0.74736	36.774	36.525	37.273	-0.2092					27	18	2	0	0	0	0.03519	1	2964	2964		51.335	7.2187	1	616560	+		9552	22674	6395	6410	11163	11163					0.10228353451361727
EALVNNPKI	9	Unmodified	_EALVNNPKI_					0	0	0		ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2893371582031	2	499.287474	996.560395	0.42711	0.00021325	-1.8857	-0.00094153	-1.4586	-0.00072828	499.28636997274714	49.083	0.86688	49.083	48.864	49.731	0					45	23	3	0	0	0	0.4752	1	5085	5085		60.972	0	1	1942000			9553	9975	6396	6411	11164	11164					0.061977429602734446
EALVRTVAL	9	Unmodified	_EALVRTVAL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000460703.1_1_3:49848630-49848912:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.2978515625	2	486.297842	970.581131	0.25819	0.00012556	-0.29718	-0.00014452	-0.038991	-1.8961E-05	486.29751263634944	56.503	0.88581	56.287	55.772	56.658	-0.21607					46	22	3	0	0	0	0.027092	1	6114	6114		143.89	26.983	1	1725000			9554	9110	6397	6412	11165	11165					0.09466333339958055
EALVRTVAL	9	Unmodified	_EALVRTVAL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000460703.1_1_3:49848630-49848912:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.297842	970.581131	-0.46873	-0.00022794	-3.2142	-0.0015631	-3.6829	-0.001791	486.29751509851883	56.24	0.43406	56.084	55.887	56.321	-0.15601	-0.1496	-0.0029033	NaN	143.89	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156870			9555	9110	6397	6412							0.09466333339958055
EALVRTVAL	9	Unmodified	_EALVRTVAL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000460703.1_1_3:49848630-49848912:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.297842	970.581131	-0.34281	-0.00016671	0.23017	0.00011193	-0.11265	-5.4779E-05	486.2977719791815	56.392	0.63515	56.235	55.972	56.608	-0.15656	0.0020102	0.00044667	NaN	143.89	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474400			9556	9110	6397	6412							0.09466333339958055
EALVRTVAL	9	Unmodified	_EALVRTVAL_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000460703.1_1_3:49848630-49848912:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.297842	970.581131	0.27198	0.00013226	-0.49082	-0.00023869	-0.21884	-0.00010642	486.2973994913866	56.552	0.67112	56.327	56.029	56.7	-0.2248	0.093883	-0.00025457	NaN	143.89	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1583200			9557	9110	6397	6412							0.09466333339958055
EALVRTVL	8	Unmodified	_EALVRTVL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7792053222656	2	450.779285	899.544017	-0.43458	-0.0001959	-0.12822	-5.78E-05	-0.5628	-0.0002537	450.77917080274807	54.208	1.3243	54.072	53.808	55.132	-0.13617					88	37	4	0	0	0	0.28835	1	5742	5742		116.9	10.488	1	9639200			9558	7775	6398	6413	11166	11166					0.09022661794188025
EALVRTVL	8	Unmodified	_EALVRTVL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.7789611816406	2	450.779285	899.544017	-0.022145	-9.9825E-06	-0.34627	-0.00015609	-0.36842	-0.00016608	450.7790651591307	54.374	1.191	54.129	53.891	55.082	-0.2453					91	34	4	0	0	0	0.25873	1	5759	5759		129.68	9.0616	1	8413100			9559	7775	6398	6413	11167	11167					0.09022661794188025
EALVRTVL	8	Unmodified	_EALVRTVL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7779846191406	2	450.779285	899.544017	0.33688	0.00015186	-0.67682	-0.0003051	-0.33994	-0.00015324	450.77889651447543	54.3	1.1991	54.103	53.889	55.088	-0.19739					74	32	3	0	0	0	0.32162	1	5752	5752		108.09	5.3142	1	7527100			9560	7775	6398	6413	11168	11168					0.09022661794188025
EALVWETVAP	10	Unmodified	_EALVWETVAP_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.7382202148438	2	557.792589	1113.57063	-0.22633	-0.00012625	1.0608	0.00059171	0.83448	0.00046547	558.2955244204084	61.207	0.36085	61.001	60.772	61.133	-0.20599					10	8	2	0	0	0	0.03519	1	6854	6854		26.693	11.051	1	130120	+		9561	28213	6399	6414	11169	11169					0.01838305894852965
EALWLPSPL	9	Unmodified	_EALWLPSPL_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3037109375	2	513.286943	1024.55933	-0.7436	-0.00038168	-4.2133	-0.0021626	-4.9568	-0.0025443	513.2845694579138	62.29	1.0384	62.353	62.272	63.311	0.062767					40	26	2	0	0	0	0.023817	1	7293	7293		42.396	0	1	1105200			9562	4258	6400	6415	11170	11170					0.04803528591378381
EALWRPLFP	9	Unmodified	_EALWRPLFP_					0	0	0			REV__ENSG00000185163|ENST00000397333|DDX51	REV__ENSG00000185163|ENST00000397333|DDX51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7222900390625	2	564.813659	1127.61277	-0.07607	-4.2965E-05	1.1095	0.00062667	1.0335	0.00058371	565.3149572927421	49.337	0.22766	49.155	49.039	49.266	-0.18206					8	5	2	0	0	0	0.024477	1	4951	4951		14.865	0	1	108170	+		9563	27740	6401	6416	11171	11171					0.054063260938846724
EALYKWLL	8	Unmodified	_EALYKWLL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MSMS	OPSCC_40_ClassI_Rep-1	4	518.2960205078125	2	518.29731	1034.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.603	1	78.348	77.848	78.848	-0.25471								0	0	0	0.3668	1	9370	9370		71.296	15.791	1				9564	18787	6402	6417	11172	11172					0.06416118971037577
EALYKWLL	8	Unmodified	_EALYKWLL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.2964477539062	2	518.29731	1034.58007	0.14	7.2564E-05	-0.5989	-0.00031041	-0.4589	-0.00023784	518.2967155769795	78.426	1.4016	78.271	77.914	79.315	-0.15591					65	32	4	0	0	0	0.74904	1	9352	9352		63.306	9.9548	1	949160			9565	18787	6402	6417	11173	11173					0.06416118971037577
EAMCFDGVK	9	Unmodified	_EAMCFDGVK_					0	0	0		ENSG00000173674|ENST00000379607|EIF1AX	ENSG00000173674|ENST00000379607|EIF1AX	ENSG00000173674|ENST00000379607|EIF1AX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7870178222656	2	500.217346	998.420138	-0.70296	-0.00035163	3.2493	0.0016254	2.5464	0.0012737	500.2190098884573	60.856	0.44792	60.643	60.347	60.795	-0.2134					18	11	2	0	0	0	0.024457	1	6947	6947		21.96	0	1	104730			9566	8397	6403	6418	11174	11174					-0.07913500359950376
EAMIDNPRSQS	11	Unmodified	_EAMIDNPRSQS_					0	0	0			REV__ENSG00000132356|ENST00000397128|PRKAA1	REV__ENSG00000132356|ENST00000397128|PRKAA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.7095947265625	3	416.527676	1246.5612	-0.79713	-0.00033203	-2.2293	-0.00092857	-3.0264	-0.0012606	416.52673937969024	26.775	0.48231	26.539	26.268	26.75	-0.23603					25	11	3	0	0	0	0.024723	1	1386	1386		19.627	0	1	255170	+		9567	23268	6404	6419	11175	11175					-0.05221830452978793
EAMKVEEPL	9	Unmodified	_EAMKVEEPL_					0	0	0			REV__GGA1|p.I132M|1|0.21|ENSG00000100083|chr22:37620330-37620330|C/G|missense_variant	REV__GGA1|p.I132M|1|0.21|ENSG00000100083|chr22:37620330-37620330|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7950439453125	2	523.26535	1044.51615	-0.4242	-0.00022197	1.2755	0.00066744	0.85132	0.00044547	523.2658306596921	67.952	0.99451	67.952	67.606	68.6	0					55	25	3	0	0	0	0.023454	1	8161	8161		71.877	4.3838	1	560880	+		9568	36070	6405	6420	11176	11176					-0.004330292482109144
EAMNELFQP	9	Unmodified	_EAMNELFQP_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2891235351562	2	539.747324	1077.4801	-0.6372	-0.00034393	1.7034	0.00091943	1.0662	0.0005755	540.7524495035973	34.832	0.32542	34.625	34.446	34.771	-0.20695					14	7	3	0	0	0	0.024405	1	2580	2580		14.865	0	1	101230			9569	4628	6406	6421	11177	11177					-0.055544864250805404
EAMNTTSLL	9	Oxidation (M)	_EAM(Oxidation (M))NTTSLL_		EAM(1)NTTSLL		EAM(71)NTTSLL	0	0	1		ENSG00000132297|ENST00000414222|HHLA1;nc|ENSG00000132297|C9JL84-2|HHLA1	ENSG00000132297|ENST00000414222|HHLA1	ENSG00000132297|ENST00000414222|HHLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.29791259765625	2	498.239332	994.464112	-0.15045	-7.4962E-05	-2.7239	-0.0013571	-2.8743	-0.0014321	498.23780172591194	61.611	0.67088	61.682	61.355	62.026	0.071125					36	17	3	0	0	0	0.023181	1	7066	7066		71.296	16.519	1	357730			9570	4587	6407	6422	11178	11178		181			-0.033341926619641526
EAMRPSAR	8	Unmodified	_EAMRPSAR_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|28|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|28|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|28|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2278747558594	2	459.234719	916.454884	-0.45589	-0.00020936	0.52853	0.00024272	0.072637	3.3358E-05	459.2350710192901	25.626	0.54344	25.626	25.324	25.867	0					13	12	2	0	0	0	0.027866	1	1213	1213		44.117	16.235	1	65059			9571	38008	6408	6423	11179	11179					-0.0066849643698105865
EAMVQVEKSD	10	Unmodified	_EAMVQVEKSD_					0	0	0			REV__nc|ENSG00000022556|Q9NX02-3|NLRP2	REV__nc|ENSG00000022556|Q9NX02-3|NLRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.75048828125	2	568.268621	1134.52269	0.89817	0.0005104	3.7365	0.0021233	4.6346	0.0026337	568.271054364399	51.181	0.57838	51.069	50.786	51.364	-0.11163					19	14	2	0	0	0	0.03519	1	5233	5233		45.022	6.2161	1	127500	+		9572	20002	6409	6424	11180	11180					-0.03919136087483821
EANAARQA	8	Unmodified	_EANAARQA_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.7093811035156	2	415.709391	829.404229	-0.30723	-0.00012772	0.073528	3.0566E-05	-0.2337	-9.715E-05	415.70940807998153	26.102	2.1457	25.934	25.662	27.808	-0.16816					116	54	3	0	0	0	0.94517	2	1301	1289;1301		45.952	3.4775	1	16521000			9573	10173	6410	6425	11181;11182	11182					-0.017297024903427882
EANCLKGAL	9	Carbamidomethyl (C)	_EANC(Carbamidomethyl (C))LKGAL_	EANC(1)LKGAL		EANC(91)LKGAL		0	1	0		ENSG00000106560|ENST00000223293|GIMAP2	ENSG00000106560|ENST00000223293|GIMAP2	ENSG00000106560|ENST00000223293|GIMAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2500305175781	2	488.250034	974.485516	-0.37664	-0.00018389	0.35368	0.00017268	-0.02296	-1.121E-05	488.2501119583659	33.604	0.91514	33.373	33.075	33.99	-0.23107					68	22	5	0	0	0	0.18915	1	2395	2395		90.777	14.003	1	4494000			9574	2796	6411	6426	11183	11183	37				-0.0027476284259364547
EANGKMVI	8	Unmodified	_EANGKMVI_					0	0	0		ENST00000519672.1_1_5:146788331-146833150:-|nuORF;nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3	ENST00000519672.1_1_5:146788331-146833150:-|nuORF	ENST00000519672.1_1_5:146788331-146833150:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.7794189453125	2	431.228571	860.442588	-0.20377	-8.7874E-05	0.5619	0.00024231	0.35813	0.00015444	431.22872451575404	34.915	0.78866	34.966	34.599	35.388	0.050255					46	20	4	0	0	0	0.027866	1	2658	2658		31.955	9.995	1	596410			9575	3317	6412	6427	11184	11184					0.0067846709997638754
EANIRIYLT	9	Unmodified	_EANIRIYLT_					0	0	0			REV__ENST00000332503.5_1_17:46653908-46653992:-|nuORF	REV__ENST00000332503.5_1_17:46653908-46653992:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8162841796875	2	546.806031	1091.59751	-0.40318	-0.00022046	-2.1643	-0.0011835	-2.5675	-0.0014039	547.3060685371047	67.238	1.112	67.015	66.816	67.928	-0.22374					53	26	4	0	0	0	0.024344	1	7769	7769		23.523	0	1	471080	+		9576	30492	6413	6428	11185	11185					0.05537414506011373
EANKEQLI	8	Unmodified	_EANKEQLI_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7972412109375	2	472.756007	943.497461	1.4036	0.00066355	2.9794	0.0014085	4.383	0.0020721	472.7572967955177	85.881	0.37485	85.881	85.667	86.042	0					14	8	2	0	0	0	0.027866	1	10758	10758		33.516	3.0119	1	65425	+		9577	27363	6414	6429	11186	11186					0.023451771722420744
EANLSKKKVCE	11	Unmodified	_EANLSKKKVCE_					0	0	0		KCTD8|p.T423A|1|0.31|ENSG00000183783|chr4:44174945-44174945|T/C|missense_variant	KCTD8|p.T423A|1|0.31|ENSG00000183783|chr4:44174945-44174945|T/C|missense_variant	KCTD8|p.T423A|1|0.31|ENSG00000183783|chr4:44174945-44174945|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.8951110839844	3	416.892067	1247.65437	0.13146	5.4803E-05	0.90993	0.00037934	1.0414	0.00043415	417.22640988903834	30.376	1.3833	30.226	29.626	31.009	-0.14952					61	32	3	0	0	0	1.0013	1	1926	1926		36.528	6.3888	1	2127100			9578	17789	6415	6430	11187	11187					0.04045094000252902
EANYWQFP	8	Unmodified	_EANYWQFP_					0	0	0		PRND|p.G88S|1|0.24|ENSG00000171864|chr20:4724813-4724813|G/A|missense_variant;ENSG00000171864|ENST00000305817|PRND	PRND|p.G88S|1|0.24|ENSG00000171864|chr20:4724813-4724813|G/A|missense_variant	PRND|p.G88S|1|0.24|ENSG00000171864|chr20:4724813-4724813|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.286865234375	2	527.735074	1053.4556	-0.97568	-0.0005149	3.1709	0.0016734	2.1952	0.0011585	527.7366535422773	30.076	0.37593	30.15	29.92	30.296	0.074314					14	8	2	0	0	0	0.027866	1	1860	1860		21.96	3.6355	1	102550			9579	8211	6416	6431	11188	11188					-0.06899378516277466
EAPAASGPAPV	11	Unmodified	_EAPAASGPAPV_					0	0	0		ENST00000492398.5_1_1:45268975-45270965:+|nuORF;ENST00000465443.5_1_1:45266117-45270174:+|nuORF;ENSG00000173846|ENST00000372201|PLK3	ENST00000492398.5_1_1:45268975-45270965:+|nuORF	ENST00000492398.5_1_1:45268975-45270965:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.301025390625	2	483.748182	965.481811	-0.50726	-0.00024539	1.1054	0.00053472	0.5981	0.00028933	483.74874206467047	54.794	0.63173	54.892	54.626	55.257	0.098015					35	17	3	0	0	0	0.024762	1	5930	5930		17.468	0	1	737690			9580	8416	6417	6432	11189	11189					-0.0023110934480428114
EAPADERLI	9	Unmodified	_EAPADERLI_					0	0	0			REV__nc|ENSG00000115041|Q9Y2W7-3|KCNIP3	REV__nc|ENSG00000115041|Q9Y2W7-3|KCNIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3028869628906	2	507.266739	1012.51892	-0.32676	-0.00016575	1.5248	0.00077349	1.1981	0.00060774	507.76739585113927	57.166	0.50674	56.941	56.776	57.283	-0.2248					23	13	2	0	0	0	0.024477	1	6198	6198		20.947	0	1	255880	+		9581	22162	6418	6433	11190	11190					0.013165622009523759
EAPAQKGPL	9	Unmodified	_EAPAQKGPL_					0	0	0			REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.22503662109375	2	455.753267	909.491981	0.59327	0.00027038	-0.93263	-0.00042505	-0.33937	-0.00015467	455.75282382093087	51.845	0.4754	51.661	51.487	51.963	-0.18404					15	12	2	0	0	0	0.02435	1	5353	5353		34.173	0	1	128950	+		9582	22388	6419	6434	11191	11191					0.03361498380422745
EAPCQDATPVL	11	Unmodified	_EAPCQDATPVL_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.27099609375	2	572.271164	1142.52777	-1.0237	-0.00058583	-0.70917	-0.00040584	-1.7329	-0.00099166	572.2706469274149	84.901	1.0795	84.926	84.579	85.659	0.025528					69	25	5	0	0	0	0.95317	1	10592	10592		47.228	2.8505	1	1229600	+		9583	24114	6420	6435	11192	11192					-0.03778832224884354
EAPDHSYES	9	Unmodified	_EAPDHSYES_					0	0	0		ENST00000600178.5_1_19:39307991-39322412:-|nuORF;ENST00000598707.5_1_19:39306922-39322412:-|nuORF;ENSG00000104823|ENST00000221418|ECH1	ENST00000600178.5_1_19:39307991-39322412:-|nuORF	ENST00000600178.5_1_19:39307991-39322412:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2949829101562	2	517.706711	1033.39887	-0.65015	-0.00033659	-1.2547	-0.00064955	-1.9048	-0.00098614	517.7056163319658	34.377	0.24557	34.202	34.128	34.374	-0.17557					6	5	2	0	0	0	0.024541	1	2518	2518		23.042	10.836	1	29309			9584	2603	6421	6436	11193	11193					-0.11649470863471834
EAPEEAEPQ	9	Unmodified	_EAPEEAEPQ_					0	0	0			REV__ENSG00000089159|ENST00000637617|PXN	REV__ENSG00000089159|ENST00000637617|PXN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2780456542969	2	500.216911	998.41927	-0.7557	-0.00037801	3.7833	0.0018925	3.0276	0.0015145	500.218772059574	60.658	0.41089	60.658	60.473	60.884	0					15	10	2	0	0	0	0.024457	1	7018	7018		29.15	0	1	125410	+		9585	20844	6422	6437	11194	11194					-0.08000300203650568
EAPERRLL	8	Unmodified	_EAPERRLL_					0	0	0			REV__ENSG00000101255|ENST00000217233|TRIB3	REV__ENSG00000101255|ENST00000217233|TRIB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7691650390625	2	492.285266	982.555979	0.41625	0.00020491	-1.7448	-0.00085892	-1.3285	-0.00065401	492.2840633538181	42.078	0.36236	42.078	41.825	42.187	0					13	10	2	0	0	0	0.027866	1	3860	3860		40.573	10.069	1	102970	+		9586	21209	6423	6438	11195	11195					0.06400278537375925
EAPETVAAEP	10	Unmodified	_EAPETVAAEP_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3034973144531	2	507.242929	1012.47131	-0.51001	-0.0002587	-2.6452	-0.0013417	-3.1552	-0.0016004	507.2422248067164	56.895	0.094933	56.895	56.841	56.936	0					4	2	2	0	0	0	0.03519	1	6373	6373		24.519	0	1	73416			9587	186	6424	6439	11196	11196					-0.034431367899060206
EAPGTCPPSAM	11	Unmodified	_EAPGTCPPSAM_					0	0	0			REV__ENST00000299421.8_1_11:6625439-6629346:+|nuORF	REV__ENST00000299421.8_1_11:6625439-6629346:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2776489257812	2	530.725535	1059.43652	-0.14456	-7.6724E-05	-0.10011	-5.3129E-05	-0.24467	-0.00012985	530.7253598508472	57.728	0.37678	57.553	57.307	57.684	-0.1749					15	9	2	0	0	0	0.024727	1	6488	6488		24.519	4.0374	1	556810	+		9588	30033	6425	6440	11197	11197					-0.0908241919385091
EAPHAPFPD	9	Unmodified	_EAPHAPFPD_					0	0	0			REV__ENST00000267163.4_1_13:49033902-49033935:+|nuORF	REV__ENST00000267163.4_1_13:49033902-49033935:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2828674316406	2	490.727249	979.439946	1.2068	0.00059219	-3.9109	-0.0019192	-2.7041	-0.001327	490.72519742277336	59.767	0.91958	59.767	59.482	60.401	0					62	24	4	0	0	0	0.024381	1	6808	6808		45.952	15.448	1	2162600	+		9589	29769	6426	6441	11198	11198					-0.050596650333318394
EAPHAPFPD	9	Unmodified	_EAPHAPFPD_					0	0	0			REV__ENST00000267163.4_1_13:49033902-49033935:+|nuORF	REV__ENST00000267163.4_1_13:49033902-49033935:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.727249	979.439946	0.2225	0.00010919	-3.1654	-0.0015534	-2.9429	-0.0014442	490.72558297433557	60.094	0.7284	59.897	59.575	60.303	-0.19742	0.080828	-0.00016212	NaN	35.618	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	792690	+		9590	29769	6426	6441							-0.050596650333318394
EAPKSLPLV	9	Unmodified	_EAPKSLPLV_					0	0	0		chr11:68900605-68903252|112|34.82|0.67|5.7|-|1|MRPL21,None|2	chr11:68900605-68903252|112|34.82|0.67|5.7|-|1|MRPL21,None|2	chr11:68900605-68903252|112|34.82|0.67|5.7|-|1|MRPL21,None|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2869873046875	2	477.286943	952.559333	0.80469	0.00038407	-0.62783	-0.00029966	0.17686	8.4413E-05	477.2864697471457	54.224	1.0394	54.322	53.876	54.916	0.098015					70	29	3	0	0	0	0.48817	1	5826	5826		60.118	1.3363	1	4111600			9591	311	6427	6442	11199	11199					0.08115528591383736
EAPLAVWLW	9	Unmodified	_EAPLAVWLW_					0	0	0		ENST00000493368.5_1_9:37428495-37428573:+|nuORF	ENST00000493368.5_1_9:37428495-37428573:+|nuORF	ENST00000493368.5_1_9:37428495-37428573:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.833740234375	2	542.794935	1083.57532	-0.074677	-4.0534E-05	0.19042	0.00010336	0.11575	6.2827E-05	542.7952259851955	71.067	0.47997	70.853	70.651	71.131	-0.21425					23	10	3	0	0	0	0.024487	1	8280	8280		17.365	1.7232	1	413060			9592	15500	6428	6443	11200	11200					0.036872348282713574
EAPLLFLL	8	Unmodified	_EAPLLFLL_					0	0	0			REV__ENSG00000129749|ENST00000250699|CHRNA10	REV__ENSG00000129749|ENST00000250699|CHRNA10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2688903808594	2	458.281129	914.547705	-0.22146	-0.00010149	-3.4527	-0.0015823	-3.6741	-0.0016838	458.2794441822839	48.436	0.51543	48.436	48.209	48.724	0					23	14	3	0	0	0	0.027866	1	4912	4912		29.842	1.9593	1	218150	+		9593	23063	6429	6444	11201	11201					0.08701331568033766
EAPLPVSRSL	10	Unmodified	_EAPLPVSRSL_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2667846679688	2	534.806031	1067.59751	-0.28375	-0.00015175	1.3829	0.00073957	1.0991	0.00058782	534.8052766568368	54.591	0.28702	54.689	54.558	54.845	0.098015					12	7	2	0	0	0	0.03519	1	5887	5887		51.193	3.5354	1	102720	+		9594	22746	6430	6445	11202	11202					0.06641414506043475
EAPLSRLAA	9	Unmodified	_EAPLSRLAA_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2668762207031	2	464.266542	926.51853	0.058634	2.7222E-05	-0.6165	-0.00028622	-0.55786	-0.000259	464.2664997711173	42.874	1.9695	42.735	41.746	43.715	-0.13929					102	55	5	0	0	0	0.72875	1	3971	3971		44.117	1.7207	1	3686000	+		9595	20911	6431	6446	11203	11203					0.052331872717559236
EAPMHMLLV	9	Unmodified	_EAPMHMLLV_					0	0	0			REV__ENST00000462073.5_1_22:30689736-30691829:-|nuORF;REV__ENSG00000169221|ENST00000409939|TBC1D10B	REV__ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7664794921875	2	520.767006	1039.51946	-0.22166	-0.00011544	-1.3179	-0.00068633	-1.5396	-0.00080176	520.7662782590676	47.647	4.0898	47.494	46.698	50.788	-0.153					259	116	4	0	0	0	0.4855	1	4777	4777		60.294	0.17569	1	67190000	+		9596	21028;26336	6432	6447	11204	11204					0.001279423247979139
EAPNQEKVSDY	11	Unmodified	_EAPNQEKVSDY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.2938232421875	2	640.293682	1278.57281	-1.7792	-0.0011392	1.8646	0.0011939	0.085422	5.4695E-05	640.2947662428646	65.64	0.78201	65.399	65.085	65.867	-0.24145					44	18	3	0	0	0	0.40931	2	7495	7495;7510		82.241	20.133	1	1533600			9597	4632	6433	6448	11205;11206	11205					-0.05533310157966298
EAPNQEKVSDY	11	Unmodified	_EAPNQEKVSDY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.2935791015625	2	640.293682	1278.57281	-1.2167	-0.00077903	1.2901	0.00082604	0.073412	4.7005E-05	640.2944002153253	65.628	0.86217	65.415	65.012	65.874	-0.21327					55	20	4	0	0	0	0.25893	2	7519	7508;7519		93.143	28.936	1	1638200			9598	4632	6433	6448	11207;11208	11208					-0.05533310157966298
EAPNQEKVSDY	11	Unmodified	_EAPNQEKVSDY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.293701171875	2	640.293682	1278.57281	-0.88106	-0.00056414	1.0277	0.00065803	0.14665	9.3897E-05	640.2942929233378	65.684	0.85789	65.433	65.027	65.885	-0.25112					51	20	4	0	0	0	0.2308	2	7495	7495;7506		96.034	14.649	1	1640000			9599	4632	6433	6448	11209;11210	11209					-0.05533310157966298
EAPNRPSPSL	10	Unmodified	_EAPNRPSPSL_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2470092773438	2	534.277638	1066.54072	-0.67042	-0.00035819	-1.9772	-0.0010564	-2.6476	-0.0014146	534.2756134854255	73.461	0.51009	73.271	72.967	73.478	-0.19027					28	12	3	0	0	0	0.03519	1	8658	8658		47.96	9.1534	1	166510	+		9600	24256	6434	6449	11211	11211					0.010113669495240174
EAPPLAPMPKP	11	Unmodified	_EAPPLAPMPKP_					0	0	0			REV__ENST00000356728.10_1_1:151787708-151789240:-|nuORF	REV__ENST00000356728.10_1_1:151787708-151789240:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.2786865234375	2	574.312635	1146.61072	0.16228	9.3201E-05	-4.464	-0.0025637	-4.3017	-0.0024705	574.3101392819335	24.106	0.82841	23.891	23.305	24.134	-0.21511					31	18	3	0	0	0	0.024752	1	1036	1036		32.812	1.2826	1	276640	+		9601	30799	6435	6450	11212	11212					0.04327529293777843
EAPQPLTF	8	Unmodified	_EAPQPLTF_					0	0	0			REV__ENST00000574030.5_2_16:55794553-55801328:+|nuORF	REV__ENST00000574030.5_2_16:55794553-55801328:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2518615722656	2	451.734543	901.454533	0.40211	0.00018165	0.66661	0.00030113	1.0687	0.00048277	451.7343163279506	74.929	0.42274	74.746	74.513	74.936	-0.18279					15	9	2	0	0	0	0.027866	1	8848	8848		30.504	0	1	65846	+		9602	35441	6436	6451	11213	11213					-0.00013592885204616323
EAPRDRLD	8	Unmodified	_EAPRDRLD_					0	0	0			REV__ENST00000338483.6_1_22:38611239-38611320:+|nuORF	REV__ENST00000338483.6_1_22:38611239-38611320:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2613525390625	2	486.24888	970.483208	-0.11557	-5.6194E-05	2.6134	0.0012708	2.4978	0.0012146	486.2505028343666	46.324	0.17981	46.324	46.163	46.343	0					6	4	2	0	0	0	0.027866	1	4556	4556		42.396	0	1	105990	+		9603	30586	6437	6452	11214	11214					-0.0032147525606660565
EAPRPDPSTSV	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EAPRPDPSTSV_					1	0	0			REV__ENST00000462414.1_1_22:32229860-32233090:+|nuORF	REV__ENST00000462414.1_1_22:32229860-32233090:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.2923583984375	2	599.290942	1196.56733	-0.40767	-0.00024431	2.613	0.0015659	2.2053	0.0013216	599.292451375102	47.157	1.263	46.888	46.304	47.567	-0.26939					100	34	5	0	0	0	0.67679	2	4571	4571;4585		65.157	12.221	1	4543500	+		9604	32902	6438	6453	11215;11216	11215					-0.02308988949812374
EAPRRARP	8	Unmodified	_EAPRRARP_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.3292541503906	2	476.7754	951.536246	0.69668	0.00033216	2.5107	0.001197	3.2074	0.0015292	476.77629946545363	78.062	0.65044	78.062	77.672	78.323	0					20	15	2	0	0	0	0.027866	1	9684	9684		21.96	9.753	1	163450			9605	18361	6439	6454	11217	11217					0.058539473172686485
EAPRRARP	8	Unmodified	_EAPRRARP_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.7754	951.536246	-0.20908	-9.9686E-05	3.7934	0.0018086	3.5843	0.0017089	476.77686662243326	78.159	0.4942	78.175	77.821	78.315	0.015907	0.099427	0.0010627	NaN	21.96	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199750			9606	18361	6439	6454							0.058539473172686485
EAPRRTRF	8	Unmodified	_EAPRRTRF_					0	0	0			REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2210693359375	2	516.788507	1031.56246	-0.98041	-0.00050666	4.4119	0.00228	3.4315	0.0017734	517.2918366037222	36.388	0.10653	36.388	36.334	36.44	0					4	2	2	0	0	0	0.027866	1	2887	2887		57.811	22.193	1	24518	+		9607	30248	6440	6455	11218	11218					0.047942164887672334
EAPRVQPDL	9	Unmodified	_EAPRVQPDL_					0	0	0		ENST00000557945.5_1_15:44580961-44581297:+|nuORF	ENST00000557945.5_1_15:44580961-44581297:+|nuORF	ENST00000557945.5_1_15:44580961-44581297:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2533569335938	2	512.774731	1023.53491	-0.48203	-0.00024717	-4.3454	-0.0022282	-4.8275	-0.0024754	512.7726484354154	57.393	0.54833	57.16	56.914	57.463	-0.23363					21	14	2	0	0	0	0.024389	1	6235	6235		35.152	14.205	1	200370			9608	16742	6441	6456	11219	11219					0.024082684378413433
EAPSIDEKV	9	Unmodified	_EAPSIDEKV_					0	0	0		ENST00000570285.1_1_13:76140977-76197422:+|nuORF;ENST00000563635.5_1_13:76123956-76287321:+|nuORF;ENSG00000118939|ENST00000377595|UCHL3	ENST00000570285.1_1_13:76140977-76197422:+|nuORF	ENST00000570285.1_1_13:76140977-76197422:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2536315917969	2	494.253297	986.492041	-0.22049	-0.00010898	0.26949	0.0001332	0.049001	2.4219E-05	494.2533293966073	56.778	0.88516	56.876	56.546	57.432	0.097897					84	24	6	0	0	0	0.11092	1	6258	6258		108.09	12.272	1	7642100			9609	3710	6442	6457	11220	11220					-0.001745464102441474
EAPSLFFMTN	10	Oxidation (M)	_EAPSLFFM(Oxidation (M))TN_		EAPSLFFM(1)TN		EAPSLFFM(96)TN	0	0	1			REV__nc|ENSG00000255298|Q8NG78|OR8G5	REV__nc|ENSG00000255298|Q8NG78|OR8G5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.77001953125	2	586.768257	1171.52196	0.30602	0.00017956	2.8656	0.0016815	3.1716	0.001861	586.7696825708855	79.589	0.91988	79.343	78.987	79.907	-0.2465					55	21	4	0	0	0	0.42812	1	9507	9507		95.815	18.498	1	2308400	+		9610	37175	6443	6458	11221	11221		979			-0.056939307365382774
EAPSVVWTK	9	Unmodified	_EAPSVVWTK_					0	0	0			REV__EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant	REV__EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2928161621094	2	508.7742	1015.53385	-0.25952	-0.00013204	-3.9512	-0.0020103	-4.2107	-0.0021423	508.77195971974953	50.831	0.77396	50.831	50.512	51.286	0					54	21	4	0	0	0	0.024374	1	5351	5351		40.778	0	1	2661300	+		9611	20759	6444	6459	11222	11222					0.026700540689603258
EAPTKKVKP	9	Unmodified	_EAPTKKVKP_					0	0	0			REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.30731201171875	2	499.305667	996.596781	-0.50603	-0.00025267	4.3397	0.0021668	3.8337	0.0019142	499.30778010048226	96.823	0.75146	96.662	96.333	97.084	-0.16106					25	16	2	0	0	0	0.024257	1	11935	11935		33.922	0	1	59741	+		9612	24302	6445	6460	11223	11223					0.09834619856997051
EAPTPAPALL	10	Unmodified	_EAPTPAPALL_					0	0	0			REV__ENSG00000165804|ENST00000360947|ZNF219	REV__ENSG00000165804|ENST00000360947|ZNF219	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2484436035156	2	490.276575	978.538597	0.14184	6.954E-05	-0.0079068	-3.8765E-06	0.13393	6.5664E-05	490.276399802537	68.589	0.66047	68.297	68.013	68.673	-0.29267					23	16	2	0	0	0	0.03519	1	8205	8205		35.618	6.4687	1	272520	+		9613	25930	6446	6461	11224	11224					0.04846938211710494
EAPTRGRPS	9	Unmodified	_EAPTRGRPS_					0	0	0		ENST00000369124.4_1_1:150122230-150123238:+|nuORF	ENST00000369124.4_1_1:150122230-150123238:+|nuORF	ENST00000369124.4_1_1:150122230-150123238:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7615966796875	2	485.756872	969.499192	-0.16313	-7.9242E-05	2.9039	0.0014106	2.7407	0.0013313	485.75811211348827	72.279	1.253	72.081	71.666	72.919	-0.1981					81	29	4	0	0	0	0.15366	1	8482	8482		98.629	9.9865	1	1645000			9614	12916	6447	6462	11225	11225					0.013222309808611499
EAPVELKT	8	Unmodified	_EAPVELKT_					0	0	0			REV__ENSG00000075391|ENST00000367649|RASAL2	REV__ENSG00000075391|ENST00000367649|RASAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2738342285156	2	443.74765	885.480748	0.10715	4.7548E-05	2.6786	0.0011886	2.7857	0.0012362	443.7490291888344	50.766	0.23069	50.617	50.561	50.792	-0.14916					10	6	2	0	0	0	0.027866	1	5337	5337		7.1934	0	1	79577	+		9615	20546	6448	6463	11226	11226					0.033426762862859505
EAPWNKIPS	9	Unmodified	_EAPWNKIPS_					0	0	0			REV__ENST00000551050.6_2_12:42866355-42876857:-|nuORF	REV__ENST00000551050.6_2_12:42866355-42876857:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.99169921875	2	521.271824	1040.5291	0.1038	5.411E-05	-0.55863	-0.0002912	-0.45482	-0.00023709	521.2713828509496	55.299	0.61155	55.068	54.821	55.432	-0.23087					25	16	2	0	0	0	0.024447	1	5885	5885		19.104	0	1	621570	+		9616	34923	6449	6464	11227	11227					0.010451699261921021
EAPWPSTAPE	10	Unmodified	_EAPWPSTAPE_					0	0	0			REV__ENSG00000005206|ENST00000613503|SPPL2B	REV__ENSG00000005206|ENST00000613503|SPPL2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.2660522460938	2	542.750921	1083.48729	-1.3813	-0.00074968	0.41123	0.0002232	-0.97003	-0.00052649	542.7509331780509	53.364	0.84398	53.217	52.758	53.602	-0.14723					46	22	3	0	0	0	0.03519	1	5800	5800		25.574	0	1	963230	+		9617	19799	6450	6465	11228	11228					-0.051114305530063575
EAPWTVYAM	9	Unmodified	_EAPWTVYAM_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2553100585938	2	534.24696	1066.47937	-0.44289	-0.00023661	1.0712	0.00057228	0.6283	0.00033567	534.245754575354	52.911	0.52991	52.764	52.53	53.06	-0.14723					20	13	2	0	0	0	0.024457	1	5685	5685		45.952	3.4775	1	201930			9618	5020	6451	6466	11229	11229					-0.051212810741162684
EAPWTVYAM	9	Unmodified	_EAPWTVYAM_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.24696	1066.47937	-0.70447	-0.00037636	-2.38	-0.0012715	-3.0845	-0.0016479	534.2452286123107	52.399	0.39719	52.399	52.198	52.595	0	-0.2329	-0.00057253	NaN	45.952	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206190			9619	5020	6451	6466							-0.051212810741162684
EAPYKNGRPCS	11	Unmodified	_EAPYKNGRPCS_					0	0	0		ENST00000566431.5_1_16:84853723-84896622:+|nuORF;nc|ENSG00000103196|Q9H0B8-3|CRISPLD2;ENST00000569262.5_1_16:84853723-84906729:+|nuORF;nc|ENSG00000103196|Q9H0B8-2|CRISPLD2;ENSG00000103196|ENST00000262424|CRISPLD2	ENST00000566431.5_1_16:84853723-84896622:+|nuORF	ENST00000566431.5_1_16:84853723-84896622:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.24951171875	2	611.287679	1220.56081	-1.2459	-0.00076157	-0.50073	-0.00030609	-1.7466	-0.0010677	611.2867322411199	61.541	0.29178	61.328	61.209	61.501	-0.21375					11	6	2	0	0	0	0.02361	1	6885	6885		83.647	5.3832	1	71606			9620	2479	6452	6467	11230	11230					-0.04065205382153181
EAQARKRIP	9	Unmodified	_EAQARKRIP_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.812255859375	2	534.817264	1067.61998	-0.44763	-0.0002394	-0.52507	-0.00028082	-0.9727	-0.00052022	534.8167791324324	19.092	0.29708	18.973	18.854	19.151	-0.11872					9	5	2	0	0	0	0.024541	1	371	371		11.511	0	1	12627			9621	6099	6453	6468	11231	11231					0.08887058694313055
EAQCRQQTQ	9	Unmodified	_EAQCRQQTQ_					0	0	0		ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7645874023438	2	546.248554	1090.48256	-0.46186	-0.00025229	-2.6378	-0.0014409	-3.0997	-0.0016932	546.2466137884225	68.388	1.1076	68.095	67.143	68.251	-0.29266					41	27	3	0	0	0	0.024313	1	8052	8052		60.118	34.055	1	786720			9622	2240	6454	6469	11232	11232					-0.05906637967405004
EAQEALKVQ	9	Unmodified	_EAQEALKVQ_					0	0	0			REV__ENST00000453697.1_1_7:63894215-63894284:+|nuORF	REV__ENST00000453697.1_1_7:63894215-63894284:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.806396484375	2	508.274564	1014.53457	-0.41772	-0.00021232	-0.050509	-2.5673E-05	-0.46823	-0.00023799	508.2743868714134	34.559	0.50932	34.555	34.298	34.807	-0.0045624					18	12	2	0	0	0	0.023239	1	2552	2552		64.207	5.4253	1	139330	+		9623	32753	6455	6470	11233	11233					0.027888487179893673
EAQFIDPED	9	Unmodified	_EAQFIDPED_					0	0	0		ENST00000508894.1_2_5:114483036-114495345:-|nuORF;ENST00000510222.1_1_5:114483036-114505363:-|nuORF	ENST00000508894.1_2_5:114483036-114495345:-|nuORF	ENST00000508894.1_2_5:114483036-114495345:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3062744140625	2	532.232561	1062.45057	0.17784	9.4652E-05	-3.1012	-0.0016506	-2.9234	-0.0015559	532.2306368038219	58.755	0.51056	58.846	58.486	58.997	0.091217					19	13	2	0	0	0	0.023842	1	6617	6617		67.494	31.875	1	152180			9624	15795	6456	6471	11234	11234					-0.0781572716955452
EAQGPGEEAM	10	Unmodified	_EAQGPGEEAM_					0	0	0			REV__nc|ENSG00000167395|O15015-1|ZNF646	REV__nc|ENSG00000167395|O15015-1|ZNF646	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80865478515625	2	509.710939	1017.40732	-1.1923	-0.00060775	1.7099	0.00087157	0.51759	0.00026382	509.7117493541094	29.104	0.82427	28.859	28.491	29.316	-0.24524					26	18	2	0	0	0	0.03519	1	1778	1778		45.972	33.013	1	66883	+		9625	26139	6457	6472	11235	11235					-0.10068240218504343
EAQKNWDL	8	Unmodified	_EAQKNWDL_					0	0	0		ENSG00000206562|ENST00000383790|METTL6;nc|ENSG00000206562|Q8TCB7-2|METTL6	ENSG00000206562|ENST00000383790|METTL6	ENSG00000206562|ENST00000383790|METTL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76336669921875	2	502.245806	1002.47706	-0.86952	-0.00043671	1.6608	0.00083413	0.79128	0.00039742	502.24641176129	34.91	0.91496	34.889	34.634	35.549	-0.021763					45	23	4	0	0	0	0.027866	1	2728	2728		31.53	11.533	1	474550			9626	10474	6458	6473	11236	11236					-0.024079934875885556
EAQLRRSR	8	Unmodified	_EAQLRRSR_					0	0	0			REV__ENST00000493504.1_1_19:59093379-59093973:+|nuORF	REV__ENST00000493504.1_1_19:59093379-59093973:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80877685546875	2	508.291414	1014.56827	-0.062577	-3.1807E-05	3.4147	0.0017357	3.3521	0.0017038	508.29295663813036	61.651	0.37666	61.437	61.167	61.544	-0.21375					15	8	3	0	0	0	0.027866	1	6882	6882		60.972	4.5381	1	806990	+		9627	33764	6459	6474	11237	11237					0.061573150004164745
EAQMYESL	8	Unmodified	_EAQMYESL_					0	0	0			REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.25628662109375	2	485.71295	969.411348	-0.36835	-0.00017891	3.8715	0.0018804	3.5032	0.0017015	485.71463089938527	52.978	1.8533	52.831	52.488	54.342	-0.14723					79	50	2	0	0	0	0.027866	1	5705	5705		34.173	21.966	1	357540	+		9628	19788	6460	6475	11238	11238					-0.07458150724778534
EAQPETEPL	9	Unmodified	_EAQPETEPL_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3312683105469	2	507.242929	1012.47131	-0.024434	-1.2394E-05	0.62394	0.00031649	0.5995	0.00030409	507.24313665739595	74.032	0.79263	73.761	73.646	74.438	-0.27126					22	18	2	0	0	0	0.024506	1	9002	9002		38.806	3.6054	1	1032200			9629	12799	6461	6476	11239	11239					-0.03443136789917389
EAQPETEPL	9	Unmodified	_EAQPETEPL_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.242929	1012.47131	0.58508	0.00029678	0.35204	0.00017857	0.93712	0.00047535	507.2429083010974	73.758	0.89207	73.758	73.617	74.509	0	0.034086	-0.00053343	NaN	37.159	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	873730			9630	12799	6461	6476							-0.03443136789917389
EAQPETEPL	9	Unmodified	_EAQPETEPL_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.242929	1012.47131	-0.22614	-0.00011471	1.1378	0.00057712	0.91161	0.00046241	507.24342744542685	73.965	0.31943	73.7	73.406	73.725	-0.26479	-0.024059	0.00026366	NaN	37.159	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647500			9631	12799	6461	6476							-0.03443136789917389
EAQPETEPL	9	Unmodified	_EAQPETEPL_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.242929	1012.47131	-0.09839	-4.9907E-05	1.1988	0.00060809	1.1004	0.00055819	507.2434029904922	73.801	0.39462	73.61	73.396	73.791	-0.19027	-0.11356	0.00032562	NaN	37.159	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409710			9632	12799	6461	6476							-0.03443136789917389
EAQRCGCAAPF	11	Unmodified	_EAQRCGCAAPF_					0	0	0			REV__ENST00000263377.6_1_19:15383626-15383689:-|nuORF	REV__ENST00000263377.6_1_19:15383626-15383689:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.78759765625	2	576.749876	1151.4852	0.31078	0.00017924	2.1228	0.0012243	2.4336	0.0014036	576.7506264733531	69.44	0.26894	69.147	68.933	69.202	-0.29291					9	6	2	0	0	0	0.024745	1	8298	8298		49.536	39.351	1	99715	+		9633	29688	6462	6477	11240	11240					-0.08448505834121534
EAQRCGCAAPF	11	Unmodified	_EAQRCGCAAPF_					0	0	0			REV__ENST00000263377.6_1_19:15383626-15383689:-|nuORF	REV__ENST00000263377.6_1_19:15383626-15383689:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.749876	1151.4852	-0.7958	-0.00045898	4.0095	0.0023125	3.2137	0.0018535	576.7522867726005	69.234	0.21855	69.25	69.133	69.352	0.015121	0.051268	0.0014822	NaN	67.494	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72074	+		9634	29688	6462	6477							-0.08448505834121534
EAQRDPSGPE	10	Unmodified	_EAQRDPSGPE_					0	0	0			REV__nc|ENSG00000102554|Q13887-2|KLF5	REV__nc|ENSG00000102554|Q13887-2|KLF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2654418945312	2	543.246535	1084.47852	-1.4236	-0.00077339	4.2583	0.0023133	2.8346	0.0015399	543.2498723428382	53.469	0.18478	53.565	53.444	53.629	0.095669					5	4	2	0	0	0	0.03519	1	5724	5724		31.53	8.0071	1	31375	+		9635	21316	6463	6478	11241	11241					-0.06034404189472298
EAQRDPSGPE	10	Unmodified	_EAQRDPSGPE_					0	0	0			REV__nc|ENSG00000102554|Q13887-2|KLF5	REV__nc|ENSG00000102554|Q13887-2|KLF5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.246535	1084.47852	-0.19121	-0.00010387	8.4625	0.0045972	8.2713	0.0044934	543.2510910678405	53.502	0.29608	53.244	53.039	53.335	-0.25838	-0.16056	0.002821	NaN	36.447	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263790	+		9636	21316	6463	6478							-0.06034404189472298
EAQRGPCL	8	Unmodified	_EAQRGPCL_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.5292663574219	2	437.215995	872.417436	-0.0005862	-2.563E-07	-2.7503	-0.0012025	-2.7509	-0.0012027	437.21434873495934	32.114	0.17055	31.877	31.74	31.91	-0.23666					5	3	2	0	0	0	0.027866	1	2180	2180		19.36	6.4008	1	23373			9637	818	6464	6479	11242	11242					-0.023875877025943737
EAQRLIEIL	9	Unmodified	_EAQRLIEIL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.26611328125	2	542.821681	1083.62881	-0.71676	-0.00038907	-3.5063	-0.0019033	-4.2231	-0.0022924	542.8199518423846	54.031	0.24312	53.884	53.711	53.954	-0.14723					12	6	2	0	0	0	0.022657	1	5825	5825		98.629	16.389	1	164590			9638	4149	6465	6480	11243	11243					0.09033987540146882
EAQRLIEIL	9	Unmodified	_EAQRLIEIL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.821681	1083.62881	-0.94025	-0.00051039	-2.5724	-0.0013964	-3.5126	-0.0019067	542.8197311757098	53.694	0.34226	53.79	53.629	53.971	0.095669	-0.046866	0.00040198	NaN	134.81	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267110			9639	4149	6465	6480							0.09033987540146882
EAQRREEERRL	11	Unmodified	_EAQRREEERRL_					0	0	0			REV__MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant	REV__MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.57965087890625	3	491.262322	1470.76514	1.4229	0.00069904	-3.6454	-0.0017908	-2.2225	-0.0010918	491.26038449838165	19.682	0.19793	19.448	19.275	19.473	-0.23345					6	3	2	0	0	0	0.02477	1	417	417		22.562	12.458	1	10303	+		9640	24095	6466	6481	11244	11244					0.04858450032679684
EAQRVARPN	9	Unmodified	_EAQRVARPN_					0	0	0			REV__ENSG00000184232|ENST00000328965|OAF	REV__ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7838134765625	2	520.783422	1039.55229	-0.065214	-3.3962E-05	1.6553	0.00086208	1.5901	0.00082811	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	0.92825	1	13663	13663		30.504	0.6621	1	7303900	+		9641	27650	6467	6482	11245	11245					0.03409608763513461
EAQTGRPAM	9	Unmodified	_EAQTGRPAM_					0	0	0			REV__ENSG00000167601|ENST00000301178|AXL	REV__ENSG00000167601|ENST00000301178|AXL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7317199707031	2	480.732009	959.449465	-0.37385	-0.00017972	0.2593	0.00012465	-0.11455	-5.5068E-05	480.7321405153963	31.237	3.3748	31.306	29.359	32.734	0.068962					202	83	4	0	0	0	0.72875	1	2026	2026		44.117	0	1	10183000	+		9642	26160	6468	6483	11246	11246					-0.03188220019455912
EAQTKRLR	8	Unmodified	_EAQTKRLR_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3087158203125	2	501.296165	1000.57778	0.34497	0.00017293	-0.31741	-0.00015912	0.027551	1.3811E-05	501.2958931890756	21.028	0.88259	20.832	20.484	21.367	-0.19577					44	17	3	0	0	0	0.027866	1	667	667		17.365	0	1	160330	+		9643	23437	6469	6484	11247	11247					0.07751083285927507
EAQTKRLR	8	Unmodified	_EAQTKRLR_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.296165	1000.57778	0.22865	0.00011462	-0.62165	-0.00031163	-0.393	-0.00019701	501.29577522275684	20.912	0.67743	20.738	20.487	21.165	-0.17415	-0.051172	-0.00042556	NaN	23.042	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195720	+		9644	23437	6469	6484							0.07751083285927507
EAQTKRLR	8	Unmodified	_EAQTKRLR_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.296165	1000.57778	-1.2805	-0.00064193	1.4889	0.00074637	0.20833	0.00010444	501.29678122644765	21.01	0.69145	20.797	20.574	21.266	-0.2128	0.0080721	0.0016904	NaN	23.042	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208390	+		9645	23437	6469	6484							0.07751083285927507
EAQVFLNKN	9	Unmodified	_EAQVFLNKN_					0	0	0		nc|ENSG00000164520|Q8TD07-5|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E;RAET1E|p.N250Mfs*11|1|0.46|ENSG00000164520|chr6:149888541-149888541|T/-|frameshift_variant;nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.310791015625	2	531.782556	1061.55056	0.41417	0.00022025	3.6916	0.0019632	4.1058	0.0021834	531.784349868611	71.007	0.4361	70.793	70.563	70.999	-0.21425					29	9	4	0	0	0	0.024457	1	8243	8243		37.159	6.8414	1	277360			9646	7288	6470	6485	11248	11248					0.022245549549097632
EAQVKTMPD	9	Unmodified	_EAQVKTMPD_					0	0	0			REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF	REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7508544921875	2	509.747324	1017.4801	-0.42528	-0.00021678	3.2607	0.0016621	2.8354	0.0014454	509.74904133176966	66.387	0.71181	66.417	66.237	66.948	0.030106					27	20	2	0	0	0	0.87448	1	7839	7839		34.173	5.023	1	1192400	+		9647	21633	6471	6486	11249	11249					-0.027944864250684986
EAQVKTMPD	9	Unmodified	_EAQVKTMPD_					0	0	0			REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF	REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.747324	1017.4801	-0.05671	-2.8908E-05	3.5179	0.0017932	3.4612	0.0017643	509.7489041161211	66.381	0.2632	66.381	66.224	66.487	0	-0.018231	0.00021639	NaN	34.173	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864470	+		9648	21633	6471	6486							-0.027944864250684986
EAQVKTMPD	9	Unmodified	_EAQVKTMPD_					0	0	0			REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF	REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	509.747324	1017.4801	-0.42528	-0.00021678	3.2607	0.0016621	2.8354	0.0014454	509.74904133176966	66.387	0.71181	66.417	66.237	66.948	0.030106	0.018231	-4.5821E-05	NaN	34.173	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1192400	+		9649	21633	6471	6486							-0.027944864250684986
EARAEPRSR	9	Unmodified	_EARAEPRSR_					0	0	0			REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	REV__ENST00000467891.5_1_22:50699812-50700103:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7733764648438	2	536.286328	1070.5581	-0.8635	-0.00046308	2.9999	0.0016088	2.1364	0.0011457	536.2882039691644	41.616	0.45422	41.386	41.196	41.651	-0.2303					18	11	2	0	0	0	0.023842	1	3690	3690		33.922	0	1	96095	+		9650	33087	6472	6487	11250	11250					0.025647072751780797
EARAFDEV	8	Unmodified	_EARAFDEV_					0	0	0			REV__nc|ENSG00000105856|O60381-3|HBP1	REV__nc|ENSG00000105856|O60381-3|HBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.7400207519531	2	468.724707	935.43486	-0.65508	-0.00030705	0.79272	0.00037157	0.13763	6.4513E-05	468.7249637547134	38.453	0.47202	38.234	38.019	38.491	-0.21848					20	12	2	0	0	0	0.027866	1	3138	3138		34.173	3.6689	1	197570	+		9651	21571	6473	6488	11251	11251					-0.03543968895951366
EARAFDEV	8	Unmodified	_EARAFDEV_					0	0	0			REV__nc|ENSG00000105856|O60381-3|HBP1	REV__nc|ENSG00000105856|O60381-3|HBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.724707	935.43486	-0.93985	-0.00044053	1.1574	0.0005425	0.21754	0.00010197	468.7250286599236	38.228	0.48412	38.228	38.071	38.555	0	-0.014626	0.00035066	NaN	19.997	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198720	+		9652	21571	6473	6488							-0.03543968895951366
EARAFDEV	8	Unmodified	_EARAFDEV_					0	0	0			REV__nc|ENSG00000105856|O60381-3|HBP1	REV__nc|ENSG00000105856|O60381-3|HBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.724707	935.43486	-0.63745	-0.00029879	0.4289	0.00020104	-0.20855	-9.7751E-05	468.72476784978403	38.19	0.29905	38.108	37.918	38.217	-0.082516	-0.1349	-0.00033226	NaN	19.997	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188870	+		9653	21571	6473	6488							-0.03543968895951366
EARAFDEV	8	Unmodified	_EARAFDEV_					0	0	0			REV__nc|ENSG00000105856|O60381-3|HBP1	REV__nc|ENSG00000105856|O60381-3|HBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	468.724707	935.43486	-1.0621	-0.00049785	-0.053133	-2.4905E-05	-1.1153	-0.00052276	468.7246393181188	38.244	0.37007	38.272	38.092	38.462	0.027275	0.029076	-0.00078414	NaN	19.997	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198640	+		9654	21571	6473	6488							-0.03543968895951366
EARAFDEV	8	Unmodified	_EARAFDEV_					0	0	0			REV__nc|ENSG00000105856|O60381-3|HBP1	REV__nc|ENSG00000105856|O60381-3|HBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.724707	935.43486	-0.85698	-0.00040169	1.3395	0.00062784	0.48248	0.00022615	468.72515879712097	38.518	0.40385	38.338	38.136	38.539	-0.17929	0.095909	0.00052134	NaN	19.997	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240580	+		9655	21571	6473	6488							-0.03543968895951366
EARASLHQW	9	Unmodified	_EARASLHQW_					0	0	0		ENSG00000187994|ENST00000591812|RINL;ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL	ENSG00000187994|ENST00000591812|RINL	ENSG00000187994|ENST00000591812|RINL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2554931640625	2	549.277972	1096.54139	-1.4942	-0.00082072	1.9585	0.0010757	0.46427	0.00025502	549.2788873698852	91.438	0.55444	91.289	91.014	91.569	-0.1487					12	12	2	0	0	0	0.02435	1	11183	11183		34.173	0	1	44174			9656	9680	6474	6489	11252	11252					-0.0030179361078808142
EARAVVSGIVW	11	Unmodified	_EARAVVSGIVW_					0	0	0			REV__ENSG00000159131|ENST00000381815|GART	REV__ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.8319702148438	2	593.83258	1185.65061	-0.58427	-0.00034696	0.21985	0.00013056	-0.36441	-0.0002164	593.8325749825296	75.392	0.93343	75.119	74.766	75.699	-0.27266					55	22	4	0	0	0	0.87596	1	8921	8921		53.089	8.0668	1	2309100	+		9657	25234	6475	6490	11253	11253					0.06520792288733901
EARDLLSFI	9	Unmodified	_EARDLLSFI_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.2930297851562	2	532.292756	1062.57096	-0.6237	-0.00033199	0.37702	0.00020069	-0.24667	-0.0001313	532.2927988506218	65.087	0.63474	65.125	64.854	65.489	0.037376					37	17	4	0	0	0	0.42604	1	7611	7611		64.207	2.0999	1	2002000			9658	998	6476	6491	11254	11254					0.04217725614716983
EAREDYFGRT	10	Unmodified	_EAREDYFGRT_					0	0	0		chr14:22976712-22981261|181|14.98|0.18|6.37|-|2|AJUBA,AJUBA|1	chr14:22976712-22981261|181|14.98|0.18|6.37|-|2|AJUBA,AJUBA|1	chr14:22976712-22981261|181|14.98|0.18|6.37|-|2|AJUBA,AJUBA|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.1957702636719	3	415.194915	1242.56291	0.015028	6.2394E-06	1.0613	0.00044063	1.0763	0.00044687	415.19525490288487	42.269	0.94252	42.039	41.651	42.593	-0.2303					69	25	3	0	0	0	1.0896	1	3781	3781		34.087	1.336	1	2834900			9659	338	6477	6492	11255	11255					-0.04866453372733304
EARELYFRKKK	11	Unmodified	_EARELYFRKKK_					0	0	0		ENST00000399207.5_1_21:37431190-37432435:-|nuORF	ENST00000399207.5_1_21:37431190-37432435:-|nuORF	ENST00000399207.5_1_21:37431190-37432435:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79290771484375	3	489.952537	1466.83578	-0.013835	-6.7784E-06	-0.44633	-0.00021868	-0.46016	-0.00022546	490.2866229529586	61.618	0.501	61.618	61.295	61.796	0					18	12	2	0	0	0	0.02484	1	7127	7127		17.167	0	1	1262900			9660	13639	6478	6493	11256	11256					0.12103775088257862
EARFRIGA	8	Unmodified	_EARFRIGA_					0	0	0		ENST00000480137.1_1_7:128446747-128451900:+|nuORF	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2605285644531	2	460.259051	918.503549	-0.78059	-0.00035928	-0.6496	-0.00029898	-1.4302	-0.00065826	460.2588711712046	37.721	1.0896	37.721	37.305	38.395	0					74	31	4	0	0	0	0.71833	1	3081	3081		65.803	2.4969	1	6674300			9661	15187	6479	6494	11257	11257					0.041037401944208796
EARFRIGA	8	Unmodified	_EARFRIGA_					0	0	0		ENST00000480137.1_1_7:128446747-128451900:+|nuORF	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.26043701171875	2	460.259051	918.503549	-0.78412	-0.0003609	-0.48219	-0.00022193	-1.2663	-0.00058283	460.2588953860786	37.636	0.90883	37.572	37.127	38.036	-0.063385					57	25	4	0	0	0	0.77775	1	3052	3052		60.972	2.19	1	6142900			9662	15187	6479	6494	11258	11258					0.041037401944208796
EARGDGGVRA	10	Unmodified	_EARGDGGVRA_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7894287109375	2	494.251954	986.489356	0.59989	0.0002965	-3.6612	-0.0018096	-3.0613	-0.0015131	494.25011867868204	88.251	0.47098	88.27	88.069	88.54	0.018555					18	10	2	0	0	0	0.03519	1	11071	11071		28.081	1.3886	1	91651	+		9663	33406	6480	6495	11259	11259					-0.004429570245179093
EARGGGGGLG	10	Unmodified	_EARGGGGGLG_					0	0	0		ENSG00000235608|ENST00000422806|NKX1-1	ENSG00000235608|ENST00000422806|NKX1-1	ENSG00000235608|ENST00000422806|NKX1-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.70947265625	2	415.709391	829.404229	-0.30723	-0.00012772	0.073528	3.0566E-05	-0.2337	-9.715E-05	415.70940807998153	26.102	2.1457	25.934	25.662	27.808	-0.16816					116	54	3	0	0	0	1.0992	1	1312	1312		32.812	7.2384	1	16521000			9664	10732	6481	6496	11260	11260					-0.01729702490320051
EARGPQESPQ	10	Unmodified	_EARGPQESPQ_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;STK11IP|p.A531Gfs*32|1|0.33|ENSG00000144589|chr2:219608385-219608386|-/GCTC|frameshift_variant	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.306884765625	2	549.762352	1097.51015	-1.2757	-0.00070132	1.0058	0.00055296	-0.26987	-0.00014837	549.7626762574998	51.893	0.76603	51.985	51.72	52.486	0.091938					40	19	3	0	0	0	0.03519	1	5513	5513		49.536	21.455	1	1342200			9665	5750	6482	6497	11261	11261					-0.03470411435546339
EARGPQLLL	9	Unmodified	_EARGPQLLL_					0	0	0		ENST00000474629.6_1_3:122449243-122449357:+|nuORF	ENST00000474629.6_1_3:122449243-122449357:+|nuORF	ENST00000474629.6_1_3:122449243-122449357:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7971496582031	2	498.795466	995.57638	0.21695	0.00010821	-0.66132	-0.00032986	-0.44437	-0.00022165	498.7950714375188	58.26	0.73438	58.351	58.084	58.819	0.091217					41	19	3	0	0	0	0.56934	1	6531	6531		54.776	8.8041	1	3557800			9666	15037	6483	6498	11262	11262					0.07841449197189831
EARIIIDLFNT	11	Unmodified	_EARIIIDLFNT_					0	0	0			REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF	REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.5776062011719	3	435.578477	1303.7136	0.29994	0.00013065	-1.8588	-0.00080965	-1.5588	-0.000679	435.57752878572217	110.31	0.40344	110.3	110.16	110.56	-0.009491					48	14	4	0	0	0	1.0501	1	13945	13945		25.068	0.79185	1	488450	+		9667	32260	6485	6499	11263	11263					0.07389313286080323
EARIRLSF	8	Unmodified	_EARIRLSF_					0	0	0		nc|ENSG00000103852|Q5W5X9-2|TTC23;nc|ENSG00000103852|Q5W5X9-3|TTC23;ENSG00000103852|ENST00000394132|TTC23	nc|ENSG00000103852|Q5W5X9-2|TTC23	nc|ENSG00000103852|Q5W5X9-2|TTC23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.76824951171875	2	496.287808	990.561064	0.091118	4.5221E-05	-0.70832	-0.00035153	-0.6172	-0.00030631	496.2875423533528	81.633	0.54276	81.404	81.022	81.564	-0.22891					19	12	2	0	0	0	0.027866	1	9791	9791		34.173	8.5985	1	165910			9668	2530	6486	6500	11264	11264					0.06540582399986761
EARLAELKP	9	Unmodified	_EARLAELKP_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7769165039062	2	513.800749	1025.58694	-0.20447	-0.00010506	-2.4134	-0.00124	-2.6179	-0.0013451	513.7995132979712	24.988	0.3109	24.813	24.554	24.865	-0.17484					9	6	2	0	0	0	0.024511	1	1120	1120		19.104	0	1	19801	+		9669	23762	6487	6501	11265	11265					0.07517431851601941
EARLAELKP	9	Unmodified	_EARLAELKP_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.800749	1025.58694	-1.0659	-0.00054764	4.2762	0.0021971	3.2103	0.0016495	514.3037794621804	25.116	0.44772	25.082	24.904	25.351	-0.034395	0.13419	0.0033135	NaN	13.454	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69801	+		9670	23762	6487	6501							0.07517431851601941
EARLHVLKV	9	Unmodified	_EARLHVLKV_					0	0	0		ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	ENSG00000163930|ENST00000460680|BAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7860107421875	2	532.832383	1063.65021	-0.49265	-0.0002625	1.4771	0.00078702	0.98441	0.00052453	532.8333328788577	45.996	0.20207	46.047	45.965	46.167	0.051395					7	5	2	0	0	0	0.023837	1	4475	4475		74.255	19.479	1	168430			9671	7171	6488	6502	11266	11266					0.1209341735950602
EARLLAAVV	9	Unmodified	_EARLLAAVV_					0	0	0			REV__ENST00000450053.7_2_3:47021266-47030373:+|nuORF	REV__ENST00000450053.7_2_3:47021266-47030373:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2745361328125	2	471.292559	940.570566	0.24536	0.00011564	-1.7531	-0.00082624	-1.5078	-0.0007106	471.29172897408415	42.401	0.53805	42.269	41.953	42.491	-0.13219					19	15	2	0	0	0	0.024021	1	3861	3861		68.787	5.4806	1	131930	+		9672	32690	6489	6503	11267	11267					0.0979035068551184
EARLMWPFW	9	Unmodified	_EARLMWPFW_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	618.304931640625	2	618.305144	1234.59573	0.31254	0.00019325	-1.0835	-0.00066994	-0.77097	-0.00047669	618.3042701966049	83.56	0.80561	83.348	82.962	83.768	-0.21159					38	18	3	0	0	0	0.88411	1	10091	10091		33.516	0.70317	1	647210	+		9673	21505	6490	6504	11268	11268					-0.012179177835832888
EARLTVSW	8	Unmodified	_EARLTVSW_					0	0	0		ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2595520019531	2	481.258717	960.50288	0.56457	0.0002717	-0.37585	-0.00018088	0.18871	9.082E-05	481.25838897230614	20.827	0.43521	20.659	20.444	20.879	-0.16774					22	8	3	0	0	0	0.88442	1	596	596		52.299	1.1065	1	225270			9674	5757	6491	6505	11269	11269					0.02104900754704886
EARPFPLL	8	Unmodified	_EARPFPLL_					0	0	0			REV__ENST00000546727.5_1_12:113545343-113557136:-|nuORF	REV__ENST00000546727.5_1_12:113545343-113557136:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.3121032714844	2	471.774003	941.533452	-0.84725	-0.00039971	-0.96322	-0.00045442	-1.8105	-0.00085413	471.771766715587	45.002	0.79034	44.791	44.362	45.153	-0.21109					34	20	3	0	0	0	0.027866	1	4211	4211		24.203	0	1	358120	+		9675	21911	6492	6506	11270	11270					0.06034679139747823
EARPGFYCL	9	Unmodified	_EARPGFYCL_					0	0	0		ENST00000429630.1_1_7:143077165-143077423:-|nuORF	ENST00000429630.1_1_7:143077165-143077423:-|nuORF	ENST00000429630.1_1_7:143077165-143077423:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8060302734375	2	528.252577	1054.4906	-0.28638	-0.00015128	4.2331	0.0022361	3.9467	0.0020849	528.2547395188296	50.233	0.6423	50.082	49.781	50.423	-0.1512					33	18	2	0	0	0	0.024381	1	5179	5179		37.159	12.655	1	910500			9676	14150	6493	6507	11271	11271					-0.03446458979988165
EARPRVLE	8	Unmodified	_EARPRVLE_					0	0	0		nc|ENSG00000197415|Q14D04-3|VEPH1	nc|ENSG00000197415|Q14D04-3|VEPH1	nc|ENSG00000197415|Q14D04-3|VEPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8365478515625	2	485.277441	968.540328	-0.01527	-7.4102E-06	0.34813	0.00016894	0.33286	0.00016153	485.27711845516006	34.048	0.39901	33.824	33.561	33.96	-0.22412					13	9	2	0	0	0	0.027866	1	2455	2455		42.864	20.904	1	48122			9677	18634	6494	6508	11272	11272					0.05479992020332247
EARPRVLE	8	Unmodified	_EARPRVLE_					0	0	0		nc|ENSG00000197415|Q14D04-3|VEPH1	nc|ENSG00000197415|Q14D04-3|VEPH1	nc|ENSG00000197415|Q14D04-3|VEPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.8365783691406	2	485.277441	968.540328	-0.30391	-0.00014748	0.17587	8.5347E-05	-0.12804	-6.2136E-05	485.277421703424	33.942	0.19761	33.735	33.627	33.824	-0.20696					7	4	2	0	0	0	0.027866	1	2454	2454		17.468	0	1	114070			9678	18634	6494	6508	11273	11273					0.05479992020332247
EARPYCCNY	9	Unmodified	_EARPYCCNY_					0	0	0		ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.7830200195312	2	559.723326	1117.4321	-0.36261	-0.00020296	0.086085	4.8184E-05	-0.27652	-0.00015478	559.7232963079396	36.411	0.27205	36.205	36.091	36.363	-0.20518					12	6	2	0	0	0	0.024447	1	2870	2870		32.812	0	1	108770			9679	8213	6495	6509	11274	11274					-0.12191883616765153
EARPYCCNY	9	Unmodified	_EARPYCCNY_					0	0	0		ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.782470703125	2	559.723326	1117.4321	0.2117	0.00011849	-0.36413	-0.00020381	-0.15243	-8.5318E-05	559.7227380773458	36.429	0.35314	36.212	36.015	36.368	-0.21661					13	8	2	0	0	0	0.024319	1	2869	2869		56.721	35.019	1	104190			9680	8213	6495	6509	11275	11275					-0.12191883616765153
EARPYCCNY	9	Unmodified	_EARPYCCNY_					0	0	0		ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.723326	1117.4321	1.1767	0.00065861	-1.5623	-0.00087443	-0.38559	-0.00021582	559.7223273124844	36.319	0.31747	36.121	36.016	36.334	-0.19829	-0.058588	-0.0010305	NaN	56.721	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137700			9681	8213	6495	6509							-0.12191883616765153
EARQEKEA	8	Unmodified	_EARQEKEA_					0	0	0		ENSG00000165813|ENST00000369287|CCDC186	ENSG00000165813|ENST00000369287|CCDC186	ENSG00000165813|ENST00000369287|CCDC186	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7878723144531	2	480.740888	959.467223	0.012243	5.8856E-06	0.32798	0.00015767	0.34022	0.00016356	480.7407935019963	22.655	1.0707	22.655	21.916	22.987	0					46	22	3	0	0	0	0.027866	1	780	780		47.916	0	1	203450			9682	7471	6496	6510	11276	11276					-0.01413181492955573
EARQGLQSV	9	Unmodified	_EARQGLQSV_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333;REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.2642822265625	2	494.26453	986.514508	0.058929	2.9126E-05	-3.6315	-0.0017949	-3.5726	-0.0017658	494.2631446910262	74.862	1.0497	74.599	74.186	75.235	-0.26326					47	24	3	0	0	0	0.12602	3	8832	8832;8844;8858		104.75	18.917	1	777650	+		9683	25364;31628	6497	6511	11277;11278;11279	11277					0.0207109777804817
EARQGLQSV	9	Unmodified	_EARQGLQSV_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333;REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	494.26453	986.514508	0.058929	2.9126E-05	-3.6315	-0.0017949	-3.5726	-0.0017658	494.2631446910262	74.862	1.0497	74.599	74.186	75.235	-0.26326	0.0032648	0.0014221	NaN	104.75	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	777650	+		9684	25364;31628	6497	6511							0.0207109777804817
EARQKGHKS	9	Unmodified	_EARQKGHKS_					0	0	0			REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7835693359375	2	520.783422	1039.55229	-0.15368	-8.0034E-05	1.2689	0.0006608	1.1152	0.00058077	520.7842808376299	104.04	1.3429	104.04	103.75	105.09	0.0031357					61	37	3	0	0	0	0.77768	1	13324	13324		40.778	3.6191	1	243720	+		9685	29203	6498	6512	11280	11280					0.03409608763513461
EARQSIAPL	9	Unmodified	_EARQSIAPL_					0	0	0		sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.32421875	2	492.777274	983.539994	-1.6481	-0.00081216	-1.1187	-0.00055128	-2.7668	-0.0013634	492.7784243048098	38.724	0.22926	38.56	38.396	38.625	-0.16458					8	5	2	0	0	0	0.024457	1	3224	3224		29.15	12.676	1	54581			9686	37938	6499	6513	11281	11281					0.04756572300470907
EARQSIAPL	9	Unmodified	_EARQSIAPL_					0	0	0		sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.777274	983.539994	-0.53683	-0.00026454	0.18575	9.1535E-05	-0.35107	-0.000173	492.77724819679264	38.596	0.71747	38.596	38.395	39.112	0	0.017967	0.00071714	NaN	29.15	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434200			9687	37938	6499	6513							0.04756572300470907
EARRKKDL	8	Unmodified	_EARRKKDL_					0	0	0		nc|ENSG00000169807|O14603-2|PRY;ENSG00000169807|ENST00000303804|PRY2;ENSG00000169789|ENST00000303728|PRY	nc|ENSG00000169807|O14603-2|PRY	nc|ENSG00000169807|O14603-2|PRY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.80145263671875	2	508.30399	1014.59343	-0.88651	-0.00045062	-3.1206	-0.0015862	-4.0071	-0.0020368	508.3023500786697	55.676	1.7745	55.774	54.66	56.435	0.098015					108	39	3	0	0	0	0.76379	2	6004	6004;6016		62.107	14.148	1	9000800			9688	7977	6500	6514	11282;11283	11282					0.08671369802982554
EARRLLNL	8	Unmodified	_EARRLLNL_					0	0	0		ENSG00000164400|ENST00000296871|CSF2	ENSG00000164400|ENST00000296871|CSF2	ENSG00000164400|ENST00000296871|CSF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.32421875	2	492.801083	983.587613	-1.3484	-0.0006645	1.2488	0.00061539	-0.099651	-4.9108E-05	492.8015964895135	38.475	0.57588	38.296	38.035	38.611	-0.17929					36	15	3	0	0	0	0.027866	1	3224	3224		26.796	0	1	568110			9689	7273	6501	6515	11284	11284					0.09516271291306566
EARRLLNL	8	Unmodified	_EARRLLNL_					0	0	0		ENSG00000164400|ENST00000296871|CSF2	ENSG00000164400|ENST00000296871|CSF2	ENSG00000164400|ENST00000296871|CSF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.801083	983.587613	-0.65007	-0.00032036	0.3874	0.00019091	-0.26267	-0.00012944	492.8012149617028	38.535	0.66854	38.313	38.054	38.722	-0.22149	-0.0046921	-0.00020509	NaN	26.796	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573910			9690	7273	6501	6515							0.09516271291306566
EARRLLNL	8	Unmodified	_EARRLLNL_					0	0	0		ENSG00000164400|ENST00000296871|CSF2	ENSG00000164400|ENST00000296871|CSF2	ENSG00000164400|ENST00000296871|CSF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.801083	983.587613	-0.19031	-9.3786E-05	-0.10465	-5.1573E-05	-0.29497	-0.00014536	492.80099560963043	38.563	0.56086	38.345	38.083	38.643	-0.21849	0.026863	-0.00069007	NaN	26.796	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565110			9691	7273	6501	6515							0.09516271291306566
EARSLLSLN	9	Unmodified	_EARSLLSLN_					0	0	0			REV__ENSG00000167131|ENST00000417826|CCDC103	REV__ENSG00000167131|ENST00000417826|CCDC103	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7807922363281	2	501.782556	1001.55056	-0.65016	-0.00032624	1.5418	0.00077363	0.8916	0.00044739	501.78345778123247	45.34	1.2688	45.191	44.796	46.065	-0.1488					99	36	4	0	0	0	0.2101	1	4396	4396		87.696	2.7809	1	6807700	+		9692	26111	6502	6516	11285	11285					0.04984554954921805
EARSLLSLN	9	Unmodified	_EARSLLSLN_					0	0	0			REV__ENSG00000167131|ENST00000417826|CCDC103	REV__ENSG00000167131|ENST00000417826|CCDC103	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.78125	2	501.782556	1001.55056	-0.12673	-6.3592E-05	0.94722	0.0004753	0.82049	0.00041171	501.7831587693353	45.205	1.3016	45.249	44.858	46.16	0.04388					105	37	4	0	0	0	0.15366	1	4332	4332		98.629	5.4339	1	6786900	+		9693	26111	6502	6516	11286	11286					0.04984554954921805
EARSRALHS	9	Unmodified	_EARSRALHS_					0	0	0			REV__ENST00000282032.3_1_11:30344691-30344748:+|nuORF	REV__ENST00000282032.3_1_11:30344691-30344748:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3037719726562	2	513.775597	1025.53664	-1.2445	-0.00063938	1.4146	0.00072677	0.1701	8.7391E-05	513.7760499117948	29.647	0.51828	29.726	29.489	30.007	0.078346					18	12	2	0	0	0	0.024319	1	1763	1763		47.657	11.211	1	232780	+		9694	29891	6503	6517	11287	11287					0.02489322246469783
EARSSDELL	9	Unmodified	_EARSSDELL_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.77093505859375	2	510.253828	1018.4931	-0.20795	-0.00010611	2.4521	0.0012512	2.2441	0.0011451	510.255656657218	84.435	0.71016	84.435	84.041	84.751	0					28	16	3	0	0	0	0.023454	1	10572	10572		71.877	0	1	148430	+		9695	22911	6504	6518	11288	11288					-0.015403320413270194
EARTRNQL	8	Unmodified	_EARTRNQL_					0	0	0			REV__SLC25A53|p.H14N|1|0.27|ENSG00000269743|chrX:104105218-104105218|G/T|missense_variant	REV__SLC25A53|p.H14N|1|0.27|ENSG00000269743|chrX:104105218-104105218|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7701721191406	2	494.270147	986.525741	0.90481	0.00044722	-3.6689	-0.0018134	-2.7641	-0.0013662	494.2709357884696	70.318	0.57788	70.318	70.209	70.787	0					36	13	4	0	0	0	0.85395	1	8502	8502		54.776	5.3348	1	840630	+		9696	37499	6505	6519	11289	11289					0.0319391987218296
EARVPGKAQ	9	Unmodified	_EARVPGKAQ_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.75274658203125	2	478.269616	954.524678	0.3262	0.00015601	-0.91031	-0.00043538	-0.58411	-0.00027936	478.26925413564913	32.836	1.3062	32.899	32.315	33.622	0.062889					77	34	4	0	0	0	0.024427	1	2201	2201		34.173	0	1	3397800			9697	2770	6506	6520	11290	11290					0.045597055032772005
EARVTRIF	8	Unmodified	_EARVTRIF_					0	0	0		CMKLR1|p.M101Wfs*30|1|0.2|ENSG00000174600|chr12:108292663-108292663|G/-|frameshift_variant;nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000174600|ENST00000550402|CMKLR1	CMKLR1|p.M101Wfs*30|1|0.2|ENSG00000174600|chr12:108292663-108292663|G/-|frameshift_variant	CMKLR1|p.M101Wfs*30|1|0.2|ENSG00000174600|chr12:108292663-108292663|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7681579589844	2	496.287808	990.561064	-0.59718	-0.00029637	-0.015191	-7.539E-06	-0.61237	-0.00030391	496.28778869309457	81.467	0.50198	81.325	81.068	81.57	-0.14249					18	11	2	0	0	0	0.027866	1	9777	9777		60.972	20.399	1	175700			9698	460	6507	6521	11291	11291					0.06540582399986761
EASATWQDI	9	Unmodified	_EASATWQDI_					0	0	0			REV__ENST00000506361.5_1_3:123456168-123512688:-|nuORF	REV__ENST00000506361.5_1_3:123456168-123512688:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8009033203125	2	510.735271	1019.45599	0.80079	0.00040899	-1.9864	-0.0010145	-1.1856	-0.00060553	510.7346403916358	59.405	0.33968	59.405	59.22	59.559	0					14	8	2	0	0	0	0.024457	1	6783	6783		37.159	11.709	1	66999	+		9699	34026	6508	6522	11292	11292					-0.05296003587102405
EASDREVPR	9	Unmodified	_EASDREVPR_					0	0	0		ENST00000563104.5_1_16:71841998-71842661:-|nuORF	ENST00000563104.5_1_16:71841998-71842661:-|nuORF	ENST00000563104.5_1_16:71841998-71842661:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8013305664062	2	529.764894	1057.51524	-0.48678	-0.00025788	-2.3557	-0.001248	-2.8425	-0.0015059	529.7636623821725	41.016	0.59959	41.016	40.692	41.292	0					17	16	2	0	0	0	0.024021	1	3621	3621		49.442	0	1	193980			9700	16859	6509	6523	11293	11293					-0.011221075729281438
EASDTVEGVLP	11	Unmodified	_EASDTVEGVLP_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant;DIDO1|p.E476Rfs*15|1|0.36|ENSG00000101191|chr20:62906049-62906050|-/T|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.8043823242188	2	558.774593	1115.53463	-0.43203	-0.00024141	0.10699	5.9782E-05	-0.32504	-0.00018163	559.2756319670327	49.009	0.14513	48.827	48.738	48.883	-0.18206					5	3	2	0	0	0	0.024762	1	4894	4894		45.972	5.1941	1	100110			9701	2291	6510	6524	11294	11294					-0.018511960726527832
EASENIRF	8	Unmodified	_EASENIRF_					0	0	0			REV__nc|ENSG00000103222|P33527-6|ABCC1	REV__nc|ENSG00000103222|P33527-6|ABCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.268310546875	2	483.237981	964.461409	-0.20235	-9.7783E-05	3.6752	0.001776	3.4729	0.0016782	483.2381807095376	46.603	0.26417	46.342	46.123	46.387	-0.26118					11	6	3	0	0	0	0.027866	1	4467	4467		82.305	0	1	67004	+		9702	21366	6511	6525	11295	11295					-0.022242800046228695
EASFLGAPEL	10	Unmodified	_EASFLGAPEL_					0	0	0			REV__ENST00000272133.3_1_1:224927453-224927669:+|nuORF	REV__ENST00000272133.3_1_1:224927453-224927669:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2653198242188	2	517.263665	1032.51278	-0.54234	-0.00028053	3.6537	0.0018899	3.1114	0.0016094	517.2654300793907	57.164	0.79396	57.164	56.809	57.603	0					68	21	4	0	0	0	0.52982	1	6412	6412		84.916	2.675	1	4899800	+		9703	29807	6512	6526	11296	11296					-0.00217956030564892
EASFLSALYM	10	Unmodified	_EASFLSALYM_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.2720336914062	2	566.273175	1130.5318	0.43894	0.00024856	-2.8786	-0.0016301	-2.4397	-0.0013815	566.2717012848174	96.177	2.647	96.04	95.243	97.89	-0.1367					96	60	4	0	0	0	0.55296	1	11873	11873		82.305	2.3658	1	1499600			9704	9743	6513	6527	11297	11297					-0.028247427311725914
EASFSSSGAV	10	Unmodified	_EASFSSSGAV_					0	0	0		ENSG00000172007|ENST00000305626|RAB33B	ENSG00000172007|ENST00000305626|RAB33B	ENSG00000172007|ENST00000305626|RAB33B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.274169921875	2	471.214172	940.413791	0.72106	0.00033977	-3.4699	-0.0016351	-2.7489	-0.0012953	471.21243865157015	42.306	0.44928	42.306	42.12	42.569	0					22	12	2	0	0	0	0.03519	1	3853	3853		71.296	16.531	1	449500			9705	8231	6514	6528	11298	11298					-0.05879978995460533
EASFSSSGAV	10	Unmodified	_EASFSSSGAV_					0	0	0		ENSG00000172007|ENST00000305626|RAB33B	ENSG00000172007|ENST00000305626|RAB33B	ENSG00000172007|ENST00000305626|RAB33B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2746276855469	2	471.214172	940.413791	0.29755	0.00014021	-2.9799	-0.0014042	-2.6824	-0.001264	471.2126451626017	42.467	0.45384	42.335	42.149	42.602	-0.13219					27	12	3	0	0	0	0.03519	1	3873	3873		73.975	5.49	1	353250			9706	8231	6514	6528	11299	11299					-0.05879978995460533
EASGSNRDPH	10	Unmodified	_EASGSNRDPH_					0	0	0			REV__ENSG00000176410|ENST00000395176|DNAJC30	REV__ENSG00000176410|ENST00000395176|DNAJC30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2144165039062	2	535.236501	1068.45845	-1.1665	-0.00062437	3.4382	0.0018402	2.2717	0.0012159	535.2392994181207	29.854	0.33992	29.681	29.406	29.745	-0.17258					10	7	2	0	0	0	0.03519	1	1851	1851		34.173	11.13	1	56886	+		9707	27020	6515	6529	11300	11300					-0.07304155129418177
EASHEGSW	8	Unmodified	_EASHEGSW_					0	0	0		ENST00000461547.5_1_20:56179631-56185646:-|nuORF;nc|ENSG00000124256|Q9H171-7|ZBP1;nc|ENSG00000124256|Q9H171-4|ZBP1;ENSG00000124256|ENST00000371173|ZBP1	ENST00000461547.5_1_20:56179631-56185646:-|nuORF	ENST00000461547.5_1_20:56179631-56185646:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2301025390625	2	451.685581	901.35661	-0.24224	-0.00010942	-3.0046	-0.0013571	-3.2468	-0.0014666	451.6840929887777	26.655	0.53793	26.632	26.405	26.943	-0.023088					16	12	2	0	0	0	0.027866	1	1377	1377		35.201	20.336	1	54983			9708	4036	6516	6530	11301	11301					-0.09801401481183802
EASIVIQKWW	10	Unmodified	_EASIVIQKWW_					0	0	0		ENSG00000163377|ENST00000295569|TAFA4	ENSG00000163377|ENST00000295569|TAFA4	ENSG00000163377|ENST00000295569|TAFA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	631.2758178710938	2	630.342781	1258.67101	-0.63561	-0.00040065	-1.8106	-0.0011413	-2.4462	-0.001542	630.3415887506949	59.152	0.56333	58.964	58.702	59.265	-0.18795					32	13	3	0	0	0	0.03519	1	6543	6543		62.107	25.661	1	455420			9709	7067	6517	6531	11302	11302					0.05201962948513028
EASKRAATL	9	Unmodified	_EASKRAATL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.769287109375	2	473.769448	945.524344	0.30053	0.00014238	-0.38012	-0.00018009	-0.079586	-3.7705E-05	473.76917778305074	20.472	0.73465	20.304	20.049	20.784	-0.16774					30	14	3	0	0	0	0.2101	1	545	545		87.696	25.589	1	837220			9710	1482	6518	6532	11303	11303					0.049402857834252245
EASLFDESTVS	11	Unmodified	_EASLFDESTVS_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.R2554Tfs*3|1|0.44|ENSG00000128731|chr15:28201512-28201513|-/T|frameshift_variant;HERC2|p.A2915Qfs*12|1|0.06|ENSG00000128731|chr15:28186659-28186659|C/-|frameshift_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.7698364257812	2	592.769508	1183.52446	-0.42804	-0.00025373	0.98263	0.00058247	0.55459	0.00032874	592.7698203515453	70.947	0.67659	70.676	70.471	71.147	-0.27184					32	15	3	0	0	0	0.72712	1	8265	8265		62.107	1.9892	1	1132600			9711	4311	6519	6533	11304	11304					-0.059958037979185974
EASLFDESTVS	11	Unmodified	_EASLFDESTVS_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.R2554Tfs*3|1|0.44|ENSG00000128731|chr15:28201512-28201513|-/T|frameshift_variant;HERC2|p.A2915Qfs*12|1|0.06|ENSG00000128731|chr15:28186659-28186659|C/-|frameshift_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.7709350585938	2	592.769508	1183.52446	-0.75529	-0.00044772	1.3686	0.00081128	0.61334	0.00036357	592.7700866215583	70.904	0.78447	70.647	70.379	71.164	-0.25713					40	19	3	0	0	0	0.63824	1	8280	8280		67.494	8.7117	1	1545700			9712	4311	6519	6533	11305	11305					-0.059958037979185974
EASLLEKTM	9	Unmodified	_EASLLEKTM_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2635192871094	2	511.26535	1020.51615	-0.1402	-7.1681E-05	-3.0905	-0.0015801	-3.2307	-0.0016517	511.2635327103733	74.894	1.0093	74.631	74.186	75.195	-0.26326					49	23	3	0	0	0	0.34489	1	8840	8840		69.628	0.8408	1	1297800	+		9713	28524	6520	6534	11306	11306					0.006709707517757124
EASLVLQQL	9	Unmodified	_EASLVLQQL_					0	0	0			REV__ENSG00000242866|ENST00000450892|STRC	REV__ENSG00000242866|ENST00000450892|STRC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.289306640625	2	500.787307	999.560061	-0.15409	-7.7169E-05	1.4586	0.00073047	1.3046	0.0006533	500.78729431251725	87.739	1.0094	87.56	87.238	88.247	-0.17875					51	24	3	0	0	0	0.5973	1	10648	10648		52.937	5.0211	1	2531900	+		9714	28984	6521	6535	11307	11307					0.060263232404167866
EASLVLQQL	9	Unmodified	_EASLVLQQL_					0	0	0			REV__ENSG00000242866|ENST00000450892|STRC	REV__ENSG00000242866|ENST00000450892|STRC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2893371582031	2	500.787307	999.560061	0.30224	0.00015136	1.1575	0.00057965	1.4597	0.000731	501.2897484881283	87.686	0.92816	87.55	87.22	88.148	-0.13613					52	22	3	0	0	0	0.067814	1	10667	10667		122.18	15.168	1	2153400	+		9715	28984	6521	6535	11308	11308					0.060263232404167866
EASPEPIL	8	Unmodified	_EASPEPIL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000032840	REV__CON__ENSEMBL:ENSBTAP00000032840	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.225341796875	2	428.226551	854.438549	-0.64819	-0.00027757	-2.2968	-0.00098356	-2.945	-0.0012611	428.2255376804418	25.744	1.2906	25.71	25.392	26.682	-0.034395					60	30	4	0	0	0	0.93274	2	1253	1240;1253		47.916	5.5195	1	1508300	+	+	9716	19529	6522	6536	11309;11310	11310					0.005507008779090938
EASPWRRR	8	Unmodified	_EASPWRRR_					0	0	0			REV__DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	REV__DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8013916015625	2	529.286131	1056.55771	0.43843	0.00023206	-2.8771	-0.0015228	-2.4386	-0.0012907	529.7857851756161	40.879	0.21327	40.756	40.584	40.797	-0.12317					8	5	2	0	0	0	0.027866	1	3620	3620		63.306	3.188	1	126190	+		9717	19673	6523	6537	11311	11311					0.03169332345987641
EASQARFVY	9	Unmodified	_EASQARFVY_					0	0	0			REV__ENST00000595700.5_1_19:44242246-44254893:-|nuORF	REV__ENST00000595700.5_1_19:44242246-44254893:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3308715820312	2	535.766906	1069.51926	-0.31334	-0.00016787	2.4037	0.0012878	2.0904	0.00112	535.768219517908	47.063	0.44016	46.966	46.682	47.122	-0.096649					16	11	2	0	0	0	0.024447	1	4561	4561		40.778	15.204	1	443890	+		9718	21565	6524	6538	11312	11312					-0.012720180792030078
EASRLQELL	9	Unmodified	_EASRLQELL_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.27490234375	2	529.795663	1057.57677	-0.55377	-0.00029338	-2.7125	-0.0014371	-3.2662	-0.0017304	529.7926900729844	40.677	0.13522	40.7	40.595	40.73	0.023006					5	3	2	0	0	0	0.024319	1	3536	3536		47.657	6.2307	1	69012			9719	4902	6525	6539	11313	11313					0.05028824126384279
EASRNTIPL	9	Unmodified	_EASRNTIPL_					0	0	0		nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1;nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.791015625	2	500.774731	999.534909	-0.38067	-0.00019063	-0.35314	-0.00017685	-0.73382	-0.00036748	500.7748722252305	30.12	0.67673	29.876	29.568	30.245	-0.24415					47	15	4	0	0	0	0.024427	1	1859	1859		34.173	3.6689	1	590420			9720	6315	6526	6540	11314	11314					0.03512268437862076
EASSGPSSRAP	11	Unmodified	_EASSGPSSRAP_					0	0	0			REV__ENST00000415912.6_1_1:21544206-21544590:-|nuORF	REV__ENST00000415912.6_1_1:21544206-21544590:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.291259765625	2	523.249077	1044.4836	-0.1445	-7.5609E-05	4.2684	0.0022334	4.1239	0.0021578	523.2513235806686	57.184	0.52494	57.02	56.675	57.2	-0.16431					31	14	4	0	0	0	0.024643	1	6352	6352		65.465	19.493	1	891040	+		9721	32065	6527	6541	11315	11315					-0.036861003268541026
EASSLTDSDAL	11	Unmodified	_EASSLTDSDAL_					0	0	0			REV__ENST00000392363.2_1_2:189092214-189092451:+|nuORF	REV__ENST00000392363.2_1_2:189092214-189092451:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.8086547851562	2	554.753858	1107.49316	-0.86707	-0.00048101	2.4531	0.0013609	1.5861	0.00087987	555.2539125546954	46.207	0.30154	46.005	45.855	46.157	-0.20226					11	7	2	0	0	0	0.024768	1	4407	4407		39.253	21.785	1	67041	+		9722	24827	6528	6542	11316	11316					-0.05628376831987225
EASVGLVRW	9	Unmodified	_EASVGLVRW_					0	0	0			REV__ENST00000338637.11_1_X:47696378-47705546:+|nuORF	REV__ENST00000338637.11_1_X:47696378-47705546:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3055114746094	2	508.779816	1015.54508	-0.75136	-0.00038228	-0.026445	-1.3455E-05	-0.77781	-0.00039573	509.28250308293565	22.443	0.46014	22.258	22.047	22.507	-0.18539					13	9	2	0	0	0	0.024405	1	766	766		53.351	16.905	1	39317	+		9723	30590	6529	6543	11317	11317					0.03792876163083747
EATAKKKINP	10	Unmodified	_EATAKKKINP_					0	0	0			REV__ENSG00000169607|ENST00000302450|CKAP2L	REV__ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.3265380859375	2	550.327131	1098.63971	-0.11854	-6.5236E-05	0.10237	5.6335E-05	-0.016173	-8.9002E-06	550.3277555338492	99.243	1.119	99.074	98.417	99.536	-0.16862					47	25	3	0	0	0	1.1088	1	12276	12276		31.53	5.9558	1	186930	+		9724	26384	6530	6544	11318	11318					0.09433389914443069
EATDPSHRY	9	Unmodified	_EATDPSHRY_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7744140625	2	538.243795	1074.47304	-0.6305	-0.00033937	-2.0545	-0.0011058	-2.685	-0.0014452	538.2428354125445	75.449	0.69012	75.191	74.906	75.596	-0.25866					34	16	3	0	0	0	0.024506	1	8894	8894		23.042	1.0826	1	192070	+		9725	25739	6531	6545	11319	11319					-0.06122082981278254
EATDSTIIEI	10	Unmodified	_EATDSTIIEI_					0	0	0			REV__nc|ENSG00000174226|Q8N9S9-2|SNX31	REV__nc|ENSG00000174226|Q8N9S9-2|SNX31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.286376953125	2	546.276969	1090.53938	-1.2792	-0.00069877	-0.2904	-0.00015864	-1.5696	-0.00085741	546.2767441731082	84.599	0.57948	84.526	84.221	84.8	-0.072769					26	10	3	0	0	0	0.03519	1	10519	10519		122.18	0	1	995520	+		9726	26843	6532	6546	11320	11320					-0.002263119298959282
EATGTWALLL	10	Unmodified	_EATGTWALLL_					0	0	0		ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000167600|Q96SQ9-2|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	ENSG00000167600|ENST00000310054|CYP2S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3272705078125	2	537.795132	1073.57571	-0.72546	-0.00039015	3.4143	0.0018362	2.6889	0.0014461	537.7969920010394	82.67	0.81252	82.67	82.195	83.008	0					36	18	3	0	0	0	0.03519	1	10325	10325		32.812	0	1	248940			9727	7705	6533	6547	11321	11321					0.0418660975747116
EATHYSSPL	9	Unmodified	_EATHYSSPL_					0	0	0			REV__ENSG00000196539|ENST00000359594|OR2T3	REV__ENSG00000196539|ENST00000359594|OR2T3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.22308349609375	2	502.737814	1003.46108	-0.58291	-0.00029305	-0.26676	-0.00013411	-0.84967	-0.00042716	502.7378614234722	46.99	0.31875	46.796	46.678	46.997	-0.19387					13	8	2	0	0	0	0.024506	1	4549	4549		23.042	3.6825	1	177370	+		9728	28193	6534	6548	11322	11322					-0.04051699724482205
EATIGRKLN	9	Unmodified	_EATIGRKLN_					0	0	0			REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3069763183594	2	501.290548	1000.56654	0.81801	0.00041006	-0.97758	-0.00049005	-0.15957	-7.9992E-05	501.2900767213522	96.763	1.5564	96.64	95.771	97.327	-0.12305					52	35	2	0	0	0	0.024477	1	11945	11945		27.882	0	1	190170	+		9729	35721	6535	6549	11323	11323					0.06628261191804086
EATLELIL	8	Unmodified	_EATLELIL_					0	0	0		nc|ENSG00000031003|Q9NYF5-3|FAM13B;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2645568847656	2	451.265676	900.516799	0.033483	1.511E-05	-3.2431	-0.0014635	-3.2096	-0.0014484	451.26412952419776	33.082	0.85314	32.85	32.544	33.397	-0.23107					63	20	5	0	0	0	0.85409	1	2326	2326		54.765	10.234	1	4935500			9730	1011	6536	6550	11324	11324					0.06256133463148217
EATLHRMN	8	Unmodified	_EATLHRMN_					0	0	0			REV__ENST00000556940.1_1_14:37777682-37838859:+|nuORF	REV__ENST00000556940.1_1_14:37777682-37838859:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8370361328125	2	486.240001	970.465449	-0.1928	-9.3747E-05	-4.3639	-0.0021219	-4.5567	-0.0022157	486.2378460979373	33.644	0.44009	33.413	33.193	33.633	-0.23107					20	10	3	0	0	0	0.027866	1	2418	2418		53.351	5.4358	1	228080	+		9731	24766	6537	6551	11325	11325					-0.02096513782544207
EATLSMTVEN	10	Unmodified	_EATLSMTVEN_					0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1;SLC24A1|p.A134Qfs*18|1|0.1|ENSG00000074621|chr15:65624480-65624480|G/-|frameshift_variant	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.781005859375	2	547.755346	1093.49614	-1.1642	-0.0006377	-0.18151	-9.942E-05	-1.3457	-0.00073712	547.7547774731868	75.815	0.48448	75.815	75.586	76.071	0					19	11	2	0	0	0	0.03519	1	9361	9361		26.693	1.1189	1	163330			9732	1532	6538	6552	11326	11326					-0.04686824978830373
EATNLRVY	8	Unmodified	_EATNLRVY_					0	0	0			REV__ENSG00000161594|ENST00000293303|KLHL10	REV__ENSG00000161594|ENST00000293303|KLHL10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2742004394531	2	483.256174	964.497795	-1.0887	-0.0005261	0.28741	0.00013889	-0.80125	-0.00038721	483.2565063995029	30.391	0.4557	30.391	30.137	30.592	0					18	10	3	0	0	0	0.027866	1	1961	1961		33.516	0	1	77780	+		9733	25387	6539	6553	11327	11327					0.014125968920893683
EATPILEW	8	Unmodified	_EATPILEW_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1;nc|ENSG00000164050|O43157-3|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7611389160156	2	479.74765	957.480748	-0.3944	-0.00018921	1.5292	0.00073362	1.1348	0.00054441	479.7477288262015	33.397	1.2358	33.404	32.888	34.124	0.0066261					45	32	2	0	0	0	0.027866	1	2473	2473		35.201	4.6971	1	201710			9734	7197	6540	6554	11328	11328					0.0003067628629196406
EATQERTDLY	10	Unmodified	_EATQERTDLY_					0	0	0		SMC3|p.Q367E|1|0.13|ENSG00000108055|chr10:110584190-110584190|C/G|missense_variant	SMC3|p.Q367E|1|0.13|ENSG00000108055|chr10:110584190-110584190|C/G|missense_variant	SMC3|p.Q367E|1|0.13|ENSG00000108055|chr10:110584190-110584190|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.2904663085938	2	613.288399	1224.56225	-1.2832	-0.00078698	3.9868	0.002445	2.7036	0.0016581	613.2908696486643	60.831	2.3089	60.654	60.076	62.385	-0.1761					192	57	5	0	0	0	0.59716	1	6857	6857		77.318	0.54344	1	55768000			9735	37907	6541	6555	11329	11329					-0.04105292812414518
EATSGSLAHCN	11	Unmodified	_EATSGSLAHCN_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2828369140625	2	545.235113	1088.45567	0.0019044	1.0383E-06	1.3818	0.00075343	1.3837	0.00075447	545.2360910406885	50.574	0.59187	50.294	50.07	50.661	-0.27977					23	15	2	0	0	0	0.024756	1	5194	5194		36.447	11.928	1	235490	+		9736	20191	6542	6556	11330	11330					-0.08501746578576785
EATSSPTTAEV	11	Unmodified	_EATSSPTTAEV_					0	0	0		MUC17|p.G970V|1|0.03|ENSG00000169876|chr7:101034325-101034325|G/T|missense_variant	MUC17|p.G970V|1|0.03|ENSG00000169876|chr7:101034325-101034325|G/T|missense_variant	MUC17|p.G970V|1|0.03|ENSG00000169876|chr7:101034325-101034325|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3326416015625	2	546.756401	1091.49825	-0.089036	-4.8681E-05	2.1306	0.0011649	2.0416	0.0011163	546.7566407441939	95.981	0.50022	95.988	95.647	96.147	0.0065002					32	10	4	0	0	0	0.024747	1	12179	12179		24.519	0	1	150190			9737	18002	6543	6557	11331	11331					-0.043840729694011316
EATTPPLTRY	10	Unmodified	_EATTPPLTRY_					0	0	0			REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|3|1|sense	REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|3|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.7994384765625	2	574.800946	1147.58734	0.95593	0.00054947	-3.0451	-0.0017503	-2.0892	-0.0012009	574.7990854031708	18.197	0.44233	18.04	17.854	18.297	-0.15637					26	8	4	0	0	0	1.0177	1	283	283		43.651	5.8393	1	377340	+		9738	36214	6544	6558	11332	11332					0.019448067808070846
EATTRPKEN	9	Unmodified	_EATTRPKEN_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ENST00000531925.5_1_19:1789538-1806275:-|nuORF	nc|ENSG00000130270|O60423-3|ATP8B3;ENST00000531925.5_1_19:1789538-1806275:-|nuORF	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.307861328125	2	523.26727	1044.51999	-0.37515	-0.0001963	4.0651	0.0021271	3.69	0.0019308	523.2692935601056	30.856	0.54615	30.931	30.667	31.213	0.074316					29	12	3	0	0	0	0.024418	1	1970	1970		37.812	0	1	203360			9739	4405;16275	6545	6559	11333	11333					-0.0004922343014186481
EATVRLSLN	9	Unmodified	_EATVRLSLN_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__ENST00000568591.5_1_16:2156634-2167660:-|nuORF	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.78277587890625	2	501.782556	1001.55056	-0.3627	-0.00018199	0.93885	0.0004711	0.57615	0.0002891	501.78311422641656	45.207	1.2281	45.207	44.758	45.986	0					95	35	4	0	0	0	0.17822	1	4371	4371		93.195	0	1	7121700	+		9740	19884;34585;35345	6546	6560	11334	11334					0.04984554954921805
EATVRLSLN	9	Unmodified	_EATVRLSLN_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__ENST00000568591.5_1_16:2156634-2167660:-|nuORF	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7790832519531	2	501.782556	1001.55056	-0.65016	-0.00032624	1.5418	0.00077363	0.8916	0.00044739	501.78345778123247	45.34	1.2688	45.191	44.796	46.065	-0.1488					99	36	4	0	0	0	0.28753	1	4409	4409		77.318	0	1	6807700	+		9741	19884;34585;35345	6546	6560	11335	11335					0.04984554954921805
EATVRLSLN	9	Unmodified	_EATVRLSLN_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532739.1_1_16:16450692-16458759:+|nuORF;REV__ENST00000568591.5_1_16:2156634-2167660:-|nuORF	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7800598144531	2	501.782556	1001.55056	-0.12673	-6.3592E-05	0.94722	0.0004753	0.82049	0.00041171	501.7831587693353	45.205	1.3016	45.249	44.858	46.16	0.04388					105	37	4	0	0	0	0.15366	1	4346	4346		98.629	0	1	6786900	+		9742	19884;34585;35345	6546	6560	11336	11336					0.04984554954921805
EAVAPLVL	8	Unmodified	_EAVAPLVL_					0	0	0			REV__ENST00000601667.5_1_19:52217262-52219608:-|nuORF	REV__ENST00000601667.5_1_19:52217262-52219608:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2488708496094	2	406.249829	810.485105	0.12795	5.1981E-05	-3.6099	-0.0014665	-3.4819	-0.0014145	406.24811937571087	90.223	1.1293	90.085	89.575	90.704	-0.13824					59	26	3	0	0	0	1.0017	1	11032	11032		37.028	0	1	760810	+		9743	35862	6547	6561	11337	11337					0.07228185499832307
EAVASQNDH	9	Unmodified	_EAVASQNDH_					0	0	0			REV__nc|ENSG00000143514|Q13625-2|TP53BP2	REV__nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2616882324219	2	485.71487	969.415188	-1.1829	-0.00057456	2.8467	0.0013827	1.6638	0.00080812	485.71585859646655	38.362	0.22601	38.362	38.247	38.473	0					7	5	2	0	0	0	0.024418	1	3209	3209		45.972	8.8131	1	98820	+		9744	24257	6548	6562	11338	11338					-0.07074344906720853
EAVASSVAEHA	11	Unmodified	_EAVASSVAEHA_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.343505859375	2	535.759278	1069.504	-0.29596	-0.00015856	-3.5061	-0.0018784	-3.8021	-0.002037	535.7571708134883	76.239	0.71438	76.251	75.938	76.653	0.011635					32	17	3	0	0	0	0.024762	1	9319	9319		30.318	3.5216	1	509410			9745	6817	6549	6563	11339	11339					-0.027969296670335098
EAVCAQMVEIC	11	Unmodified	_EAVCAQMVEIC_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.2598266601562	2	598.261427	1194.5083	-0.75818	-0.00045359	-1.1032	-0.00066	-1.8614	-0.0011136	598.763227312816	64.917	1.0791	64.661	64.269	65.348	-0.25563					34	26	2	0	0	0	0.23292	1	7379	7379		95.815	2.6197	1	2389600	+		9746	25765	6550	6564	11340	11340					-0.08117247831660279
EAVCAQMVEIC	11	Unmodified	_EAVCAQMVEIC_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	598.261427	1194.5083	-1.3696	-0.00081939	-2.0739	-0.0012407	-3.4435	-0.0020601	598.2602222840363	64.413	0.63336	64.413	64.203	64.836	0	-0.11291	-6.9016E-05	NaN	95.815	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484240	+		9747	25765	6550	6564							-0.08117247831660279
EAVCAQMVEIC	11	Unmodified	_EAVCAQMVEIC_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	598.261427	1194.5083	-1.6417	-0.00098215	-1.7272	-0.0010333	-3.3689	-0.0020155	598.260416182551	64.752	0.60506	64.489	64.23	64.835	-0.2626	-0.037243	0.00034579	NaN	95.815	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535110	+		9748	25765	6550	6564							-0.08117247831660279
EAVCAQMVEIC	11	Unmodified	_EAVCAQMVEIC_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	598.261427	1194.5083	-0.65902	-0.00039427	-2.705	-0.0016183	-3.364	-0.0020126	598.2596384202458	64.435	0.60084	64.48	64.225	64.825	0.045502	-0.046062	-0.00082419	NaN	95.815	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469980	+		9749	25765	6550	6564							-0.08117247831660279
EAVELLQGL	9	Unmodified	_EAVELLQGL_					0	0	0			REV__ENST00000558641.2_1_15:101402159-101407614:+|nuORF	REV__ENST00000558641.2_1_15:101402159-101407614:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2743225097656	2	486.274032	970.533512	0.64607	0.00031417	-0.40099	-0.00019499	0.24508	0.00011918	486.2738468986523	70.805	0.99709	70.805	70.569	71.566	0					55	24	4	0	0	0	0.26966	1	8574	8574		79.713	10.926	1	2186500	+		9750	35100	6551	6565	11341	11341					0.0470663434908829
EAVERLSVL	9	Unmodified	_EAVERLSVL_					0	0	0		nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	nc|ENSG00000167671|Q9BZV1-2|UBXN6	nc|ENSG00000167671|Q9BZV1-2|UBXN6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2919921875	2	508.292756	1014.57096	-0.66552	-0.00033828	-0.024474	-1.244E-05	-0.68999	-0.00035072	508.2927383105903	64.701	1.3521	64.446	64.038	65.39	-0.25563					56	33	2	0	0	0	0.2508	1	7344	7344		82.241	10.363	1	5339200			9751	7719	6552	6566	11342	11342					0.06425725614712974
EAVIKHSL	8	Unmodified	_EAVIKHSL_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.7637939453125	2	448.763635	895.512717	-0.23825	-0.00010692	-0.27624	-0.00012397	-0.51449	-0.00023089	448.76342700813393	30.512	0.95995	30.267	29.991	30.951	-0.24415					50	22	4	0	0	0	0.053308	2	1962	1950;1962		177.71	19.718	1	4346300			9752	1691	6553	6567	11343;11344	11344					0.06078088760091305
EAVIKHSL	8	Unmodified	_EAVIKHSL_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.76397705078125	2	448.763635	895.512717	-0.69624	-0.00031245	0.25013	0.00011225	-0.44611	-0.0002002	448.7636309446126	30.442	0.91505	30.263	29.997	30.912	-0.17818					48	21	4	0	0	0	0.053308	3	1932	1932;1943;1955		177.71	19.718	1	3893600			9753	1691	6553	6567	11345;11346;11347	11345					0.06078088760091305
EAVIKHSL	8	Unmodified	_EAVIKHSL_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.7637023925781	2	448.763635	895.512717	-0.11056	-4.9617E-05	-0.22496	-0.00010095	-0.33552	-0.00015057	448.7634225718292	30.472	0.88584	30.323	29.923	30.809	-0.14952					45	20	4	0	0	0	0.043832	3	1942	1921;1929;1942		191.63	28.836	1	3710700			9754	1691	6553	6567	11348;11349;11350	11350					0.06078088760091305
EAVKITKQP	9	Unmodified	_EAVKITKQP_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8306579589844	2	507.303124	1012.5917	-0.073157	-3.7113E-05	-0.83175	-0.00042195	-0.90491	-0.00045906	507.30260377745424	46.977	0.63547	46.708	46.49	47.125	-0.26939					29	17	3	0	0	0	0.024283	1	4547	4547		56.434	12.057	1	424050	+		9755	25824	6554	6568	11351	11351					0.08590315994365483
EAVKKIIKS	9	Unmodified	_EAVKKIIKS_					0	0	0			REV__ENST00000575826.5_1_17:7530037-7530880:-|nuORF	REV__ENST00000575826.5_1_17:7530037-7530880:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3055114746094	2	508.329142	1014.64373	-0.5961	-0.00030302	0.15926	8.0955E-05	-0.43685	-0.00022206	508.32910685674483	22.161	0.37824	21.976	21.811	22.189	-0.18539					13	7	2	0	0	0	0.024447	1	766	766		32.812	1.2826	1	82258	+		9756	24096	6555	6569	11352	11352					0.13699479408148818
EAVKLIIGR	9	Unmodified	_EAVKLIIGR_					0	0	0		nc|ENSG00000182134|Q9Y2W6-3|TDRKH;ENSG00000182134|ENST00000368824|TDRKH;ENST00000486986.6_1_1:151752280-151755498:-|nuORF	nc|ENSG00000182134|Q9Y2W6-3|TDRKH	nc|ENSG00000182134|Q9Y2W6-3|TDRKH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.30487060546875	2	499.821484	997.628415	0.76649	0.00038311	-1.9984	-0.00099885	-1.2319	-0.00061574	499.82102256383024	60.028	0.44314	60.028	59.813	60.256	0					27	11	3	0	0	0	0.024367	1	6892	6892		36.447	14.487	1	517460			9757	9102	6556	6570	11353	11353					0.1295061261095043
EAVKQRLP	8	Unmodified	_EAVKQRLP_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7511291503906	2	470.782359	939.550165	0.0922	4.3406E-05	-0.35908	-0.00016905	-0.26688	-0.00012564	470.78220664512713	45.433	0.67077	45.433	45.114	45.784	0					28	19	3	0	0	0	0.027866	1	4366	4366		21.96	0	1	414470	+		9758	23762	6557	6571	11354	11354					0.07797180025715988
EAVLADFGMY	10	Unmodified	_EAVLADFGMY_					0	0	0			REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2597045898438	2	558.257525	1114.5005	0.2176	0.00012148	2.8064	0.0015667	3.024	0.0016882	558.2591032240977	79.482	1.4597	79.263	78.994	80.454	-0.21923					96	34	5	0	0	0	1.0271	1	9547	9547		42.396	12.078	1	8248200	+		9759	19955	6558	6572	11355	11355					-0.05217315765253261
EAVLPTMTAF	10	Unmodified	_EAVLPTMTAF_					0	0	0		ENSG00000162542|ENST00000294543|TMCO4;nc|ENSG00000162542|Q5TGY1-2|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7464599609375	2	540.275718	1078.53688	-0.42252	-0.00022828	-3.5426	-0.001914	-3.9651	-0.0021422	540.2738265606197	76.154	1.3172	75.895	75.075	76.392	-0.25865					59	32	2	0	0	0	0.03519	1	8966	8966		37.812	0	1	147740			9760	6951	6559	6573	11356	11356					0.0007556113146165444
EAVLPTMTAF	10	Unmodified	_EAVLPTMTAF_					0	0	0		ENSG00000162542|ENST00000294543|TMCO4;nc|ENSG00000162542|Q5TGY1-2|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7462158203125	2	540.275718	1078.53688	-0.80477	-0.0004348	-3.3216	-0.0017946	-4.1264	-0.0022294	540.2737944854391	75.9	1.3162	75.725	74.986	76.302	-0.17548					74	32	3	0	0	0	0.03519	1	8939	8939		31.53	0	1	151280			9761	6951	6559	6573	11357	11357					0.0007556113146165444
EAVMYVCKV	9	Unmodified	_EAVMYVCKV_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3055419921875	2	521.259013	1040.50347	-0.60538	-0.00031556	-1.8469	-0.00096273	-2.4523	-0.0012783	521.2573907584564	47.173	0.39629	47.173	46.93	47.326	0					16	10	3	0	0	0	0.024405	1	4729	4729		44.117	5.3107	1	206110			9762	2737	6560	6574	11358	11358					-0.015157639121071043
EAVNANIINK	10	Unmodified	_EAVNANIINK_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.829345703125	2	543.301113	1084.58767	-0.74131	-0.00040275	3.2184	0.0017485	2.477	0.0013458	543.3018626517924	54.943	0.37833	54.793	54.442	54.82	-0.15036					16	10	2	0	0	0	0.03519	1	5999	5999		37.812	4.9991	1	327510			9763	18383	6561	6575	11359	11359					0.04876226500641678
EAVPLGLGL	9	Unmodified	_EAVPLGLGL_					0	0	0		ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	ENSG00000182459|ENST00000333437|TEX19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.8852233886719	2	434.760561	867.506569	0.12289	5.3427E-05	-2.6059	-0.0011329	-2.483	-0.0010795	434.75929769820436	19.855	0.77951	19.855	19.689	20.468	0					22	15	2	0	0	0	0.024535	1	488	488		25.45	8.0852	1	188180			9764	9138	6562	6576	11360	11360					0.06751570528570028
EAVQVVLAV	9	Unmodified	_EAVQVVLAV_					0	0	0			REV__ENSG00000049860|ENST00000261416|HEXB	REV__ENSG00000049860|ENST00000261416|HEXB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.758544921875	2	464.279118	926.543683	-0.33723	-0.00015657	-0.8212	-0.00038127	-1.1584	-0.00053783	464.2786981521442	53.806	0.88446	53.659	53.203	54.088	-0.14723					55	24	3	0	0	0	0.024466	1	5765	5765		31.53	15.057	1	2584800	+		9765	20151	6563	6577	11361	11361					0.07747242074333371
EAVREAFETG	10	Unmodified	_EAVREAFETG_					0	0	0		ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2907104492188	2	554.767103	1107.51965	-0.34571	-0.00019179	-2.7114	-0.0015042	-3.0571	-0.001696	554.7668566218641	60.836	0.1524	60.63	60.543	60.695	-0.20599					6	3	2	0	0	0	0.03519	1	6785	6785		47.657	6.8792	1	96506			9766	7680	6564	6578	11362	11362					-0.02980643149999196
EAVRLLVSV	9	Unmodified	_EAVRLLVSV_					0	0	0		nc|ENSG00000160570|Q8WXF8-2|DEDD2;ENSG00000160570|ENST00000596251|DEDD2	nc|ENSG00000160570|Q8WXF8-2|DEDD2	nc|ENSG00000160570|Q8WXF8-2|DEDD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2900085449219	2	493.305667	984.596781	0.1847	9.1116E-05	0.57838	0.00028532	0.76309	0.00037644	493.30589856902736	61.495	0.29793	61.268	61.118	61.415	-0.22663					10	7	2	0	0	0	0.024292	1	7084	7084		49.442	3.4896	1	190050			9767	6822	6565	6579	11363	11363					0.10386619857001733
EAVSDQQGR	9	Unmodified	_EAVSDQQGR_					0	0	0		ENST00000468709.5_1_10:101993014-101993080:-|nuORF	ENST00000468709.5_1_10:101993014-101993080:-|nuORF	ENST00000468709.5_1_10:101993014-101993080:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.77655029296875	2	495.23597	988.457387	-0.70881	-0.00035103	-3.3661	-0.001667	-4.0749	-0.002018	495.2343460030935	28.035	0.68866	27.866	27.649	28.337	-0.16897					25	16	2	0	0	0	0.024209	1	1585	1585		47.657	0	1	145340			9768	14881	6566	6580	11364	11364					-0.037303694983279456
EAVSKTAL	8	Unmodified	_EAVSKTAL_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.73468017578125	2	409.734543	817.454533	-0.1836	-7.5229E-05	0.99137	0.0004062	0.80777	0.00033097	409.7347628765688	31.051	0.57607	30.81	30.497	31.073	-0.24109					35	13	4	0	0	0	0.6536	1	2042	2042		71.296	7.9894	1	980720			9769	1766	6567	6581	11365	11365					0.03850407114805421
EAVSKTAL	8	Unmodified	_EAVSKTAL_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.73486328125	2	409.734543	817.454533	-0.13873	-5.6841E-05	0.76331	0.00031275	0.62458	0.00025591	409.7346722463779	30.977	0.53194	30.824	30.553	31.085	-0.15231					34	12	4	0	0	0	0.47665	1	1998	1998		87.754	13.78	1	983850			9770	1766	6567	6581	11366	11366					0.03850407114805421
EAVSKWKN	8	Unmodified	_EAVSKWKN_					0	0	0		RAB38|p.A102S|1|0.04|ENSG00000123892|chr11:88149854-88149854|C/A|missense_variant	RAB38|p.A102S|1|0.04|ENSG00000123892|chr11:88149854-88149854|C/A|missense_variant	RAB38|p.A102S|1|0.04|ENSG00000123892|chr11:88149854-88149854|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2745056152344	2	481.258717	960.50288	-0.20758	-9.9901E-05	0.11816	5.6865E-05	-0.089424	-4.3036E-05	481.25862018646137	60.136	0.70624	59.936	59.654	60.36	-0.20016					59	18	4	0	0	0	0.027866	1	6929	6929		47.916	0	1	1770200			9771	19019	6568	6582	11367	11367					0.02104900754704886
EAVSLLWKV	9	Unmodified	_EAVSLLWKV_					0	0	0		ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3001708984375	2	522.808042	1043.60153	0.16244	8.4927E-05	3.0519	0.0015955	3.2143	0.0016805	522.8093867243304	52.714	0.54947	52.567	52.17	52.72	-0.14723					37	13	4	0	0	0	0.024427	1	5585	5585		26.693	0	1	518160			9772	13285	6569	6583	11368	11368					0.08147503999771288
EAVSLLWKV	9	Unmodified	_EAVSLLWKV_					0	0	0		ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.808042	1043.60153	-0.85609	-0.00044757	4.2155	0.0022039	3.3594	0.0017563	522.8099311536106	52.62	0.59145	52.62	52.236	52.827	0	0.032937	0.00092424	NaN	34.173	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669900			9773	13285	6569	6583							0.08147503999771288
EAVSLLWKV	9	Unmodified	_EAVSLLWKV_					0	0	0		ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.808042	1043.60153	-0.06569	-3.4343E-05	3.0262	0.0015821	2.9606	0.0015478	522.8093829534723	52.502	0.50946	52.593	52.24	52.749	0.091942	0.006691	-0.0003193	NaN	34.173	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254800			9774	13285	6569	6583							0.08147503999771288
EAVSLLWKV	9	Unmodified	_EAVSLLWKV_					0	0	0		ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	ENST00000379876.5_1_X:19014179-19014218:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.808042	1043.60153	0.048109	2.5152E-05	2.9246	0.001529	2.9727	0.0015541	523.3116844380784	52.757	0.24287	52.567	52.47	52.712	-0.18982	-0.019434	-0.00042563	NaN	34.173	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197790			9775	13285	6569	6583							0.08147503999771288
EAVVMVEVI	9	Unmodified	_EAVVMVEVI_					0	0	0		nc|ENSG00000283378|Q9BZ76-2|CNTNAP3	nc|ENSG00000283378|Q9BZ76-2|CNTNAP3	nc|ENSG00000283378|Q9BZ76-2|CNTNAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2266845703125	2	494.772811	987.531069	-0.90391	-0.00044723	4.4149	0.0021844	3.511	0.0017372	494.7748784254059	38.126	0.68638	38.126	37.869	38.555	0					56	19	4	0	0	0	0.024457	1	3220	3220		29.15	2.4566	1	794430			9776	18805	6570	6584	11369	11369					0.0368046261978634
EAVVQPAKVV	10	Unmodified	_EAVVQPAKVV_					0	0	0			REV__ENSG00000130826|ENST00000369550|DKC1	REV__ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.765625	2	520.310949	1038.60735	-0.80608	-0.00041941	-0.75506	-0.00039287	-1.5611	-0.00081228	520.8116805096294	47.552	0.41562	47.552	47.395	47.811	0					19	12	2	0	0	0	0.03519	1	4759	4759		64.207	5.4253	1	313630	+		9777	23161	6571	6585	11370	11370					0.08958602511415847
EAVVSDDMVA	10	Oxidation (M)	_EAVVSDDM(Oxidation (M))VA_		EAVVSDDM(1)VA		EAVVSDDM(49)VA	0	0	1			REV__nc|ENSG00000078674|Q15154-4|PCM1;REV__nc|ENSG00000078674|Q15154-3|PCM1	REV__nc|ENSG00000078674|Q15154-3|PCM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2315063476562	2	526.234247	1050.45394	-0.064158	-3.3762E-05	-1.7949	-0.00094451	-1.859	-0.00097828	526.2331110464029	50.275	0.56525	50.17	49.856	50.422	-0.10558					46	14	5	0	0	0	0.96965	1	5114	5114		49.442	8.6634	1	2307400	+		9778	20615;36481	6572	6586	11371	11371		630			-0.06926800387213916
EAWARRVP	8	Unmodified	_EAWARRVP_					0	0	0		nc|ENSG00000213999|Q02080|MEF2B	nc|ENSG00000213999|Q02080|MEF2B	nc|ENSG00000213999|Q02080|MEF2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2998962402344	2	492.772326	983.530098	0.054173	2.6695E-05	2.867	0.0014128	2.9212	0.0014395	492.7735715887115	90.212	0.69584	90.196	89.959	90.655	-0.016716					28	16	3	0	0	0	0.027866	1	11381	11381		25.45	0	1	162470			9779	18714	6573	6587	11372	11372					0.03767429085758067
EAWKQTEP	8	Unmodified	_EAWKQTEP_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;ENST00000477136.5_1_2:27278334-27279673:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2867126464844	2	494.740357	987.46616	0.1533	7.5845E-05	4.1267	0.0020417	4.28	0.0021175	494.742154232846	67.466	0.36356	67.49	67.31	67.674	0.023911					13	8	2	0	0	0	0.027866	1	7961	7961		24.519	1.4767	1	73022			9780	18100	6574	6588	11373	11373					-0.028073958618620054
EAWPGLVPT	9	Unmodified	_EAWPGLVPT_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78826904296875	2	485.255643	968.496732	0.33032	0.00016029	3.9599	0.0019216	4.2902	0.0020818	485.2574955081353	47.296	0.61082	47.143	46.899	47.51	-0.15301					29	16	2	0	0	0	0.022924	1	4694	4694		73.975	8.1716	1	192930			9781	10981	6575	6589	11374	11374					0.011223825231923001
EAWPGLVPT	9	Unmodified	_EAWPGLVPT_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.255643	968.496732	0.16585	8.0481E-05	2.4095	0.0011692	2.5754	0.0012497	485.2566516567604	47.263	0.59078	46.994	46.837	47.427	-0.26939	-0.096853	-0.0010613	NaN	73.975	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219550			9782	10981	6575	6589							0.011223825231923001
EAWQRYGK	8	Unmodified	_EAWQRYGK_					0	0	0			REV__CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	REV__CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2794189453125	2	519.261791	1036.50903	0.1558	8.09E-05	3.1653	0.0016436	3.3211	0.0017245	519.2634369193335	77.657	0.37897	77.446	77.206	77.585	-0.21087					14	8	2	0	0	0	0.027866	1	9541	9541		24.203	2.2429	1	74710	+		9783	19247	6576	6590	11375	11375					-0.007765810137698281
EAWRRALD	8	Unmodified	_EAWRRALD_					0	0	0		ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3021545410156	2	508.76724	1015.51993	0.53621	0.0002728	4.2498	0.0021622	4.786	0.002435	509.27082409010296	55.625	0.25053	55.625	55.464	55.715	0					10	6	2	0	0	0	0.027866	1	6160	6160		53.351	0	1	84386			9784	9015	6577	6591	11376	11376					0.012788213605062992
EAWVQPPGY	9	Unmodified	_EAWVQPPGY_					0	0	0		nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	nc|ENSG00000077044|Q16760-2|DGKD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.750732421875	2	523.750724	1045.4869	-0.5027	-0.00026329	-2.8566	-0.0014962	-3.3593	-0.0017594	523.7492090444878	39.571	1.0202	39.407	39.081	40.101	-0.16458					67	26	4	0	0	0	0.80658	1	3384	3384		38.806	4.6336	1	3181000			9785	1595	6578	6592	11377	11377					-0.03402805482187432
EAWVTAII	8	Unmodified	_EAWVTAII_					0	0	0			REV__ENSG00000221931|ENST00000327930|OR6X1	REV__ENSG00000221931|ENST00000327930|OR6X1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2301025390625	2	451.752736	901.490919	-0.12612	-5.6975E-05	-3.9991	-0.0018066	-4.1252	-0.0018636	451.7507288157304	26.019	1.0465	26.019	25.569	26.615	0					47	24	3	0	0	0	0.027866	1	1328	1328		54.765	0	1	572260	+		9786	28839	6579	6593	11378	11378					0.036232840115076215
EAYKVFSR	8	Unmodified	_EAYKVFSR_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.8082580566406	2	500.266542	998.51853	-1.2093	-0.00060497	3.42	0.0017109	2.2107	0.0011059	500.26797088589285	37.978	0.31909	37.76	37.607	37.926	-0.21848					14	8	2	0	0	0	0.027866	1	3091	3091		23.042	0	1	77429			9787	5404	6580	6594	11379	11379					0.01921187271773306
EAYSRSQL	8	Unmodified	_EAYSRSQL_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.2376708984375	2	477.237981	952.461409	0.33088	0.00015791	-0.07235	-3.4528E-05	0.25853	0.00012338	477.23770691423573	32.671	0.83395	32.479	32.029	32.863	-0.19261					44	19	4	0	0	0	0.26388	1	2281	2281		127.46	28.832	1	1258800		+	9788	536	6581	6595	11380	11380					-0.016722800046068187
EAYSRSQL	8	Unmodified	_EAYSRSQL_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.237548828125	2	477.237981	952.461409	-0.19892	-9.4933E-05	0.6609	0.00031541	0.46198	0.00022047	477.23796035107927	32.461	0.85596	32.304	31.991	32.847	-0.15772					45	20	4	0	0	0	0.2677	1	2221	2221		125.81	17.727	1	1484700		+	9789	536	6581	6595	11381	11381					-0.016722800046068187
EAYSRSQL	8	Unmodified	_EAYSRSQL_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.237981	952.461409	0.25668	0.0001225	-0.15182	-7.2454E-05	0.10486	5.0045E-05	477.23778392085836	32.592	0.82788	32.356	32.042	32.87	-0.23666	-0.023672	-0.00011827	NaN	127.46	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1418700		+	9790	536	6581	6595							-0.016722800046068187
ECAHVWIS	8	Unmodified	_ECAHVWIS_					0	0	0		ENSG00000176900|ENST00000322049|OR51T1	ENSG00000176900|ENST00000322049|OR51T1	ENSG00000176900|ENST00000322049|OR51T1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7534484863281	2	472.71837	943.422187	0.18977	8.9706E-05	0.018044	8.5297E-06	0.20781	9.8235E-05	472.71801665997765	36.305	2.5049	36.305	35.018	37.523	0					112	67	3	0	0	0	0.027866	1	2799	2799		31.955	15.482	1	341830			9791	8680	6582	6596	11382	11382					-0.051787035598295006
ECAKLFVNIN	10	Unmodified	_ECAKLFVNIN_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8426513671875	2	575.799891	1149.58523	-0.24688	-0.00014216	-0.25477	-0.00014669	-0.50165	-0.00028885	575.7997770024327	88.512	0.67212	88.38	88.153	88.825	-0.13135					30	15	3	0	0	0	0.03519	1	10852	10852		41.427	0	1	233520	+		9792	23630	6583	6597	11383	11383					0.01642054771355106
ECAPLDVALQ	10	Unmodified	_ECAPLDVALQ_					0	0	0			REV__ENSG00000196581|ENST00000378191|AJAP1	REV__ENSG00000196581|ENST00000378191|AJAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7993774414062	2	529.762975	1057.5114	-0.9066	-0.00048028	1.2548	0.00066476	0.34823	0.00018448	529.763405424148	83.726	1.0269	83.635	83.342	84.369	-0.090446					46	21	3	0	0	0	0.03519	1	10426	10426		32.812	0	1	693800	+		9793	28199	6584	6598	11384	11384					-0.01505913390974456
ECCLNEEATAV	11	Unmodified	_ECCLNEEATAV_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	591.2434692382812	2	591.244289	1180.47402	-1.8939	-0.0011197	0.62072	0.000367	-1.2732	-0.00075275	591.2446518003549	35.213	1.0566	35.192	34.828	35.884	-0.021763					83	27	5	0	0	0	1.0017	1	2673	2673		36.447	2.2742	1	7223300	+		9794	20653	6585	6599	11385	11385					-0.10899372718927225
ECCLNEEATAV	11	Unmodified	_ECCLNEEATAV_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	591.244289	1180.47402	-0.91323	-0.00053994	-0.32066	-0.00018959	-1.2339	-0.00072953	591.2439313763903	35.499	0.5817	35.283	35.024	35.606	-0.21555	0.012158	-0.00093938	NaN	36.447	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	816550	+		9795	20653	6585	6599							-0.10899372718927225
ECCLNEEATAV	11	Unmodified	_ECCLNEEATAV_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	591.244289	1180.47402	-1.207	-0.00071364	-0.14217	-8.4059E-05	-1.3492	-0.0007977	591.2441406366954	35.462	0.58569	35.25	34.963	35.548	-0.21246	-0.021545	-0.00072832	NaN	36.447	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	822600	+		9796	20653	6585	6599							-0.10899372718927225
ECCPCSFPRP	10	Unmodified	_ECCPCSFPRP_					0	0	0		ENST00000372813.3_1_20:43571317-43571440:-|nuORF	ENST00000372813.3_1_20:43571317-43571440:-|nuORF	ENST00000372813.3_1_20:43571317-43571440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.8258056640625	2	569.727555	1137.44056	0.28217	0.00016076	-3.0316	-0.0017272	-2.7494	-0.0015664	569.7256196849014	74.497	0.71588	74.238	73.986	74.702	-0.25887					40	16	3	0	0	0	0.03519	1	9138	9138		19.997	0	1	929820			9797	13056	6586	6600	11386	11386					-0.12266652971788972
ECDEEKEFE	9	Unmodified	_ECDEEKEFE_					0	0	0			REV__ENSG00000131013|ENST00000253329|PPIL4	REV__ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.7630004882812	2	579.218794	1156.42303	-0.814	-0.00047149	-4.028	-0.0023331	-4.842	-0.0028046	579.2164497373237	40.008	0.34721	39.783	39.581	39.928	-0.225					12	8	2	0	0	0	0.024523	1	3395	3395		21.96	13.725	1	74350	+		9798	23175	6587	6601	11387	11387					-0.1489199849211218
ECELEVRAI	9	Unmodified	_ECELEVRAI_					0	0	0			REV__ENSG00000080986|ENST00000261597|NDC80	REV__ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2706298828125	2	531.268424	1060.5223	1.1525	0.00061231	-0.21241	-0.00011285	0.94014	0.00049947	531.2681518898328	74.402	0.75102	74.402	74.084	74.835	0					61	17	5	0	0	0	0.42604	1	9098	9098		64.207	0.67341	1	1260200	+		9799	20669	6588	6602	11388	11388					-0.005545110166849554
ECERWSLAL	9	Unmodified	_ECERWSLAL_					0	0	0		nc|ENSG00000168386|Q4L180-4|FILIP1L	nc|ENSG00000168386|Q4L180-4|FILIP1L	nc|ENSG00000168386|Q4L180-4|FILIP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.766845703125	2	553.768591	1105.52263	-0.63153	-0.00034972	-2.7444	-0.0015198	-3.376	-0.0018695	553.7668875116799	54.358	0.89708	54.222	53.721	54.618	-0.13617					61	26	4	0	0	0	0.62163	1	5777	5777		51.335	1.7994	1	2830100			9800	18492	6589	6603	11389	11389					-0.025910912968583943
ECFDKKLPL	9	Unmodified	_ECFDKKLPL_					0	0	0			REV__ENSG00000196867|ENST00000301318|ZFP28	REV__ENSG00000196867|ENST00000301318|ZFP28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.9131469726562	2	546.791535	1091.56852	-0.54662	-0.00029889	4.224	0.0023096	3.6774	0.0020108	546.7934106967218	27.337	0.29515	27.095	26.911	27.207	-0.24217					13	6	3	0	0	0	0.024405	1	1506	1506		35.618	0	1	78215	+		9801	28231	6590	6604	11390	11390					0.026395538854103506
ECFILAGWL	9	Unmodified	_ECFILAGWL_					0	0	0			REV__ENST00000292114.7_1_17:26688326-26688482:+|nuORF	REV__ENST00000292114.7_1_17:26688326-26688482:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.796875	2	526.267696	1050.52084	0.17036	8.9653E-05	3.5517	0.0018692	3.7221	0.0019588	526.7699610243783	78.909	0.38339	78.753	78.514	78.897	-0.15591					11	8	2	0	0	0	0.024386	1	9430	9430		42.474	0	1	33449	+		9802	29947	6591	6605	11391	11391					-0.0024010031479519967
ECGEWLCK	8	Unmodified	_ECGEWLCK_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.7682189941406	2	484.204238	966.393924	-0.1881	-9.1079E-05	4.1319	0.0020007	3.9438	0.0019096	484.20594225757753	27.309	0.59556	27.067	26.828	27.423	-0.24217					20	13	2	0	0	0	0.027866	1	1478	1478		24.203	4.206	1	142550			9803	9982	6592	6606	11392	11392					-0.09061769531444952
ECGKAFRGQ	9	Unmodified	_ECGKAFRGQ_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.294921875	2	498.240001	994.465449	-0.091549	-4.5613E-05	-1.696	-0.00084504	-1.7876	-0.00089065	498.2386906172539	34.324	1.0066	34.324	34.011	35.018	0					37	25	2	0	0	0	0.024323	1	2624	2624		27.882	10.517	1	581110			9804	10523	6593	6607	11393	11393					-0.032005137825422025
ECGKAFRGQ	9	Unmodified	_ECGKAFRGQ_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.240001	994.465449	-0.44235	-0.0002204	-0.0036377	-1.8124E-06	-0.44599	-0.00022221	498.2398382024263	34.018	0.5626	34.068	33.804	34.367	0.050255	-0.10723	0.00053183	NaN	27.882	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666430			9805	10523	6593	6607							-0.032005137825422025
ECGKLREQEEE	11	Unmodified	_ECGKLREQEEE_					0	0	0			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2441101074219	3	450.538241	1348.59289	-0.27485	-0.00012383	3.0142	0.001358	2.7394	0.0012342	450.5396139158616	31.144	0.19858	30.992	30.887	31.085	-0.15231					6	4	2	0	0	0	0.024757	1	2027	2027		25.892	3.3301	1	34226	+		9806	26438	6594	6608	11394	11394					-0.06745882489667565
ECGTVKLFM	9	Unmodified	_ECGTVKLFM_					0	0	0			REV__ENST00000295851.9_2_2:204295425-204295500:+|nuORF	REV__ENST00000295851.9_2_2:204295425-204295500:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2870483398438	2	514.251188	1026.48782	0.0080587	4.1442E-06	-0.93168	-0.00047912	-0.92362	-0.00047497	514.2503940760039	72.147	0.44904	71.872	71.706	72.155	-0.27509					20	10	3	0	0	0	0.024405	1	8439	8439		44.117	12.483	1	189550	+		9807	29984	6595	6609	11395	11395					-0.024360504291507823
ECHEWLCL	8	Unmodified	_ECHEWLCL_					0	0	0			REV__ENST00000529354.1_1_11:118992311-119001682:+|nuORF	REV__ENST00000529354.1_1_11:118992311-119001682:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2822875976562	2	516.717513	1031.42047	-0.17247	-8.9117E-05	3.2149	0.0016612	3.0424	0.0015721	516.7190143552629	75.125	0.51623	74.88	74.675	75.191	-0.24455					19	12	2	0	0	0	0.027866	1	9151	9151		19.36	0	1	135000	+		9808	26656	6596	6610	11396	11396					-0.09398080640107764
ECHNLVPLGP	10	Unmodified	_ECHNLVPLGP_					0	0	0		MUC5B|p.P5308L|1|0.31|ENSG00000117983|chr11:1255415-1255415|C/T|missense_variant	MUC5B|p.P5308L|1|0.31|ENSG00000117983|chr11:1255415-1255415|C/T|missense_variant	MUC5B|p.P5308L|1|0.31|ENSG00000117983|chr11:1255415-1255415|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.7930908203125	2	539.771134	1077.52771	-1.1422	-0.00061652	-1.556	-0.00083989	-2.6982	-0.0014564	539.7699379101501	51.604	0.5253	51.457	51.084	51.609	-0.14735					31	14	3	0	0	0	0.03519	1	5404	5404		24.519	6.1948	1	289240			9809	18005	6597	6611	11397	11397					-0.007947874342335126
ECHQIKSLQ	9	Unmodified	_ECHQIKSLQ_					0	0	0		NIPBL-WDR70|1|fusion;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7980346679688	2	543.274041	1084.53353	-0.5397	-0.0002932	4.3957	0.0023881	3.856	0.0020949	543.2762351025249	71.813	0.63921	71.607	71.344	71.984	-0.20613					32	15	3	0	0	0	0.023837	1	8399	8399		64.207	13.015	1	871360			9810	18873	6598	6612	11398	11398					-0.005356889225595296
ECILKQKSI	9	Unmodified	_ECILKQKSI_					0	0	0		ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2671508789062	2	531.30481	1060.59507	-0.92054	-0.00048909	-4.3554	-0.0023141	-5.276	-0.0028032	531.3022284244129	20.977	0.94186	20.764	20.078	21.02	-0.2128					28	18	3	0	0	0	0.023842	1	555	555		58.23	3.4536	1	37409			9811	6148	6599	6613	11399	11399					0.0671924277673952
ECILKQKSI	9	Unmodified	_ECILKQKSI_					0	0	0		ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.30481	1060.59507	0.018877	1.0029E-05	-5.9119	-0.003141	-5.893	-0.003131	531.3014009013588	20.928	0.49073	20.732	20.484	20.975	-0.19577	0.011989	-0.00022338	NaN	58.23	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30888			9812	6148	6599	6613							0.0671924277673952
ECIRRYSI	8	Unmodified	_ECIRRYSI_					0	0	0			REV__nc|ENSG00000258227|Q9NY25-2|CLEC5A	REV__nc|ENSG00000258227|Q9NY25-2|CLEC5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.2686767578125	2	520.271301	1038.52805	-0.038208	-1.9878E-05	-4.4004	-0.0022894	-4.4386	-0.0023093	520.2688033385149	75.355	0.90073	75.096	74.695	75.596	-0.25866					58	21	4	0	0	0	0.28835	1	8941	8941		116.9	23.708	1	2954500	+		9813	29094	6600	6614	11400	11400					0.010326322856371917
ECLERCKNY	9	Unmodified	_ECLERCKNY_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.2883911132812	2	579.257533	1156.50051	-0.36551	-0.00021173	0.98881	0.00057277	0.62329	0.00036105	579.2580121438489	79.4	0.662	79.18	78.873	79.535	-0.21923					29	15	3	0	0	0	0.022756	1	9504	9504		58.782	0	1	344930	+		9814	36907	6601	6615	11401	11401					-0.07147639036907094
ECLKKLQKV	9	Unmodified	_ECLKKLQKV_					0	0	0		ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	ENST00000548878.6_1_12:110874873-110883331:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.7997436523438	2	544.828452	1087.64235	-0.14358	-7.8228E-05	0.86029	0.00046871	0.71671	0.00039048	544.8283489823148	50.487	0.44188	50.382	50.202	50.644	-0.10558					26	11	3	0	0	0	0.024535	1	5149	5149		25.45	7.1258	1	501190			9815	16560	6602	6616	11402	11402					0.10203522047731894
ECLMGNCQYVQ	11	Unmodified	_ECLMGNCQYVQ_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENST00000527750.1_1_11:47826046-47827772:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.2633972167969	3	429.843731	1286.50936	-0.083408	-3.5852E-05	-0.88504	-0.00038043	-0.96845	-0.00041628	429.8433065149602	41.849	0.55878	41.617	41.311	41.87	-0.23186					34	14	3	0	0	0	0.024759	1	3697	3697		12.957	0	1	447740			9816	1009	6603	6617	11403	11403					-0.12243033462755193
ECLPPSTVT	9	Unmodified	_ECLPPSTVT_					0	0	0		ENSG00000123388|ENST00000546378|HOXC11	ENSG00000123388|ENST00000546378|HOXC11	ENSG00000123388|ENST00000546378|HOXC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.75225830078125	2	473.731143	945.447733	0.45713	0.00021656	1.0374	0.00049144	1.4945	0.000708	473.7318285998772	34.144	0.39305	34.144	33.816	34.209	0					11	9	2	0	0	0	0.024487	1	2498	2498		17.365	10.629	1	53646			9817	3975	6604	6618	11404	11404					-0.02717273828056932
ECLVTRVSS	9	Unmodified	_ECLVTRVSS_					0	0	0			REV__nc|ENSG00000120868|O14727-3|APAF1	REV__nc|ENSG00000120868|O14727-3|APAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.24981689453125	2	497.255317	992.49608	-0.050447	-2.5085E-05	0.95474	0.00047475	0.90429	0.00044967	497.25577378206816	28.946	0.58746	29.027	28.742	29.329	0.080812					23	14	2	0	0	0	0.024319	1	1643	1643		56.721	8.8055	1	354890	+		9818	36614	6605	6619	11405	11405					-0.00046780188165485015
ECLVWIGGK	9	Unmodified	_ECLVWIGGK_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7926330566406	2	502.76532	1003.51609	-0.77552	-0.0003899	0.0090166	4.5333E-06	-0.7665	-0.00038537	502.76715425382326	64.483	0.70886	64.227	63.795	64.504	-0.25562					16	11	2	0	0	0	0.024205	1	7295	7295		44.117	0	1	152190	+		9819	26994	6606	6620	11406	11406					0.014470155424646691
ECLYRRNL	8	Unmodified	_ECLYRRNL_					0	0	0			REV__ENST00000583899.5_1_17:7477924-7480015:+|nuORF	REV__ENST00000583899.5_1_17:7477924-7480015:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7747192382812	2	533.776751	1065.53895	-0.94614	-0.00050503	-3.0201	-0.001612	-3.9662	-0.0021171	533.7747907920686	84.171	2.0904	84.198	83.814	85.905	0.026558					117	49	4	0	0	0	0.46709	1	10464	10464		88.643	0.88857	1	2621900	+		9820	35546	6607	6621	11407	11407					0.008800346599173281
ECMGAVSALGL	11	Unmodified	_ECMGAVSALGL_					0	0	0			REV__ENST00000470597.5_1_5:64558740-64769500:-|nuORF;REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	REV__ENST00000470597.5_1_5:64558740-64769500:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.770263671875	2	525.751553	1049.48855	-0.52859	-0.00027791	1.9681	0.0010347	1.4395	0.00075684	525.7526289311238	31.267	0.35071	31.026	30.834	31.185	-0.24109					13	8	2	0	0	0	0.024498	1	2054	2054		74.255	18.751	1	126340	+		9821	33158;36455	6608	6622	11408	11408					-0.0342125578008563
ECMRRKTY	8	Unmodified	_ECMRRKTY_					0	0	0			REV__ENST00000463938.5_1_1:48864995-48878812:-|nuORF	REV__ENST00000463938.5_1_1:48864995-48878812:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2262573242188	2	543.762786	1085.51102	-0.79835	-0.00043411	3.8377	0.0020868	3.0393	0.0016527	543.7649857900216	57.772	0.76598	57.594	57.06	57.826	-0.17775					31	19	3	0	0	0	0.027866	1	6349	6349		12.959	0	1	432430	+		9822	23254	6609	6623	11409	11409					-0.028316115917959905
ECPDLQSPLA	10	Unmodified	_ECPDLQSPLA_					0	0	0			REV__PRSS16|p.L406P|1|0.04|ENSG00000112812|chr6:27254759-27254759|T/C|missense_variant	REV__PRSS16|p.L406P|1|0.04|ENSG00000112812|chr6:27254759-27254759|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.773193359375	2	536.752607	1071.49066	-0.48304	-0.00025927	0.88075	0.00047275	0.39771	0.00021347	536.7533175166282	41.358	0.45845	41.222	40.985	41.443	-0.13553					17	11	2	0	0	0	0.03519	1	3673	3673		39.253	5.7372	1	164960	+		9823	37411	6610	6624	11410	11410					-0.042225037706202784
ECPICRKDI	9	Unmodified	_ECPICRKDI_					0	0	0		ENSG00000112130|ENST00000373479|RNF8;ENST00000229866.10_1_6:37328318-37358531:+|nuORF	ENSG00000112130|ENST00000373479|RNF8	ENSG00000112130|ENST00000373479|RNF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.766845703125	2	538.764994	1075.51544	-1.4105	-0.0007599	4.3583	0.0023481	2.9478	0.0015882	538.7672703117345	83.277	0.89713	83.304	82.874	83.771	0.02655					47	20	3	0	0	0	0.247	1	10346	10346		82.75	4.4867	1	1790900			9824	3173	6611	6625	11411	11411					-0.01930147168923213
ECRARKKL	8	Unmodified	_ECRARKKL_					0	0	0		ENSG00000111269|ENST00000228865|CREBL2	ENSG00000111269|ENST00000228865|CREBL2	ENSG00000111269|ENST00000228865|CREBL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7927551269531	2	502.295111	1002.57567	-0.063567	-3.1929E-05	-1.6775	-0.0008426	-1.7411	-0.00087452	502.29415092613146	63.785	0.81379	63.557	63.291	64.104	-0.22773					30	20	2	0	0	0	0.027866	1	7281	7281		30.504	7.4612	1	469020			9825	3099	6612	6626	11412	11412					0.07448331276486897
ECRCAQYRY	9	Unmodified	_ECRCAQYRY_					0	0	0			REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.256591796875	2	596.255325	1190.4961	-0.3052	-0.00018198	2.6868	0.001602	2.3816	0.0014201	596.2567154226763	69.839	0.82005	69.616	69.307	70.127	-0.22245					64	19	5	0	0	0	0.4752	1	8107	8107		60.972	15	1	2219400	+		9826	33277	6613	6627	11413	11413					-0.09153103459811973
ECRCAQYRY	9	Unmodified	_ECRCAQYRY_					0	0	0			REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	596.255325	1190.4961	-0.85103	-0.00050743	3.1646	0.0018869	2.3136	0.0013795	596.2570063738269	69.955	0.79088	69.688	69.368	70.159	-0.26724	0.043493	0.00025655	NaN	60.972	56	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1964800	+		9827	33277	6613	6627							-0.09153103459811973
ECRCAQYRY	9	Unmodified	_ECRCAQYRY_					0	0	0			REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	REV__ENST00000474802.1_1_2:27355436-27356101:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	596.255325	1190.4961	-0.3052	-0.00018198	2.6868	0.001602	2.3816	0.0014201	596.2567154226763	69.839	0.82005	69.616	69.307	70.127	-0.22245	-0.028246	-0.00031318	NaN	60.972	64	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2219400	+		9828	33277	6613	6627							-0.09153103459811973
ECRFVGLTN	9	Unmodified	_ECRFVGLTN_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.R1888H|1|0.2|ENSG00000115464|chr2:61265512-61265512|C/T|missense_variant;ENST00000492882.1_1_2:61492513-61493137:-|nuORF	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.8204956054688	2	519.755484	1037.49641	0.51999	0.00027027	-4.1908	-0.0021782	-3.6708	-0.0019079	519.7537054819842	80.668	0.44691	80.461	80.3	80.747	-0.20632					23	10	3	0	0	0	0.024447	1	9718	9718		25.574	0	1	181260			9829	3450	6614	6628	11414	11414					-0.02083360468304818
ECRPKKLF	8	Unmodified	_ECRPKKLF_					0	0	0			REV__ENST00000538501.5_1_11:73950145-73964552:+|nuORF	REV__ENST00000538501.5_1_11:73950145-73964552:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.78033447265625	2	510.786587	1019.55862	-0.35238	-0.00017999	-2.5538	-0.0013044	-2.9062	-0.0014844	511.2874984360773	93.1	0.67723	93.1	92.794	93.472	0					22	15	2	0	0	0	0.027866	1	11808	11808		24.203	0	1	66204	+		9830	34715	6615	6629	11415	11415					0.049624106706801285
ECRRNLVQ	8	Unmodified	_ECRRNLVQ_					0	0	0		ENST00000475860.1_1_2:242038724-242041688:-|nuORF;ENSG00000122085|ENST00000391980|MTERF4	ENST00000475860.1_1_2:242038724-242041688:-|nuORF	ENST00000475860.1_1_2:242038724-242041688:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3207092285156	2	509.26655	1016.51855	0.34314	0.00017475	1.9697	0.0010031	2.3128	0.0011778	509.2677001034199	69.421	0.26799	69.128	68.97	69.238	-0.29291					10	6	2	0	0	0	0.027866	1	8323	8323		25.45	0	1	172000			9831	3913	6616	6630	11416	11416					0.010948640001174681
ECSFYPCKN	9	Unmodified	_ECSFYPCKN_					0	0	0			REV__ENSG00000145839|ENST00000274520|IL9	REV__ENSG00000145839|ENST00000274520|IL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2578735351562	2	545.720252	1089.42595	0.63298	0.00034543	3.3663	0.001837	3.9992	0.0021825	545.7215807867249	59.618	0.43979	59.42	59.173	59.613	-0.19742					20	10	3	0	0	0	0.024	1	6607	6607		55.504	0	1	145410	+		9832	24437	6617	6631	11417	11417					-0.11518401848297799
ECSFYPCKN	9	Unmodified	_ECSFYPCKN_					0	0	0			REV__ENSG00000145839|ENST00000274520|IL9	REV__ENSG00000145839|ENST00000274520|IL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.258544921875	2	545.720252	1089.42595	-0.32095	-0.00017515	4.0098	0.0021883	3.6889	0.0020131	545.7221548982453	59.713	0.43747	59.464	59.211	59.648	-0.24842					19	10	2	0	0	0	0.024	1	6602	6602		55.504	9.532	1	147740	+		9833	24437	6617	6631	11418	11418					-0.11518401848297799
ECSKSRARR	9	Unmodified	_ECSKSRARR_					0	0	0			REV__ENST00000464350.6_1_3:66428885-66430595:+|nuORF	REV__ENST00000464350.6_1_3:66428885-66430595:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.8115234375	2	546.788181	1091.56181	-0.59544	-0.00032558	0.012341	6.748E-06	-0.5831	-0.00031883	546.7882025072842	43.394	0.61142	43.156	42.879	43.49	-0.23736					28	16	3	0	0	0	0.024539	1	3983	3983		27.882	10.517	1	736870	+		9834	32971	6618	6632	11419	11419					0.019690537773840333
ECTAPVIPTH	10	Unmodified	_ECTAPVIPTH_					0	0	0			REV__ENST00000583837.5_1_17:59853319-59853833:-|nuORF	REV__ENST00000583837.5_1_17:59853319-59853833:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7544555664062	2	534.263142	1066.51173	-1.1118	-0.00059399	-1.7494	-0.00093465	-2.8612	-0.0015286	534.2619811965781	55.686	1.0774	55.53	55.178	56.255	-0.15655					48	28	2	0	0	0	0.03519	1	6106	6106		47.657	8.8512	1	1749100	+		9835	35557	6619	6633	11420	11420					-0.0188649367112248
ECTGKRKYLH	10	Unmodified	_ECTGKRKYLH_					0	0	0		nc|ENSG00000155329|Q8TBK6-2|ZCCHC10;ENSG00000155329|ENST00000509437|ZCCHC10	nc|ENSG00000155329|Q8TBK6-2|ZCCHC10	nc|ENSG00000155329|Q8TBK6-2|ZCCHC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	617.8192138671875	2	617.821689	1233.62883	-0.4547	-0.00028093	-3.9372	-0.0024325	-4.3919	-0.0027134	617.8191244181005	29.142	1.0406	29.145	28.631	29.672	0.0031357					64	25	4	0	0	0	1.0816	1	1739	1739		35.152	0.97948	1	1886300			9836	6469	6620	6634	11421	11421					0.021356642684850158
ECTHNGCPL	9	Unmodified	_ECTHNGCPL_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7615051269531	2	487.196945	972.379336	-0.16506	-8.0417E-05	-2.0894	-0.001018	-2.2545	-0.0010984	487.1959691657978	59.284	0.22055	59.37	59.206	59.426	0.085682					7	5	2	0	0	0	0.024374	1	6671	6671		40.778	13.982	1	55220	+		9837	26472	6621	6635	11422	11422					-0.10795841679578189
ECTPALAQEL	10	Unmodified	_ECTPALAQEL_					0	0	0			REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3052368164062	2	537.760432	1073.50631	0.3516	0.00018908	3.3592	0.0018064	3.7108	0.0019955	537.7620911018588	85.863	0.72945	85.713	85.41	86.139	-0.14967					31	16	3	0	0	0	0.03519	1	10441	10441		68.846	10.616	1	115000	+		9838	31749	6622	6636	11423	11423					-0.027502172536060243
ECVELMWY	8	Unmodified	_ECVELMWY_					0	0	0			REV__ENSG00000112576|ENST00000372991|CCND3	REV__ENSG00000112576|ENST00000372991|CCND3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.755859375	2	536.727546	1071.44054	-0.81183	-0.00043573	4.4298	0.0023776	3.6179	0.0019419	536.7301230753144	76.74	0.42835	76.572	76.223	76.652	-0.16854					14	9	2	0	0	0	0.027866	1	9083	9083		14.664	6.9738	1	43620	+		9839	22013	6623	6637	11424	11424					-0.09232329700148512
ECVELMWY	8	Unmodified	_ECVELMWY_					0	0	0			REV__ENSG00000112576|ENST00000372991|CCND3	REV__ENSG00000112576|ENST00000372991|CCND3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.727546	1071.44054	0.065524	3.5169E-05	6.1843	0.0033193	6.2498	0.0033545	537.231644908105	76.941	0.21388	76.673	76.509	76.723	-0.26806	0.076233	0.0015422	NaN	14.664	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36812	+		9840	22013	6623	6637							-0.09232329700148512
ECVELMWY	8	Unmodified	_ECVELMWY_					0	0	0			REV__ENSG00000112576|ENST00000372991|CCND3	REV__ENSG00000112576|ENST00000372991|CCND3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.727546	1071.44054	-0.070206	-3.7682E-05	4.1408	0.0022225	4.0706	0.0021848	536.7300403158291	76.797	0.38498	76.545	76.314	76.699	-0.25162	-0.051466	-0.00065143	NaN	14.664	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35429	+		9841	22013	6623	6637							-0.09232329700148512
ECVESLAPLV	10	Unmodified	_ECVESLAPLV_					0	0	0			REV__ENST00000425350.1_1_13:49151308-49151716:-|nuORF	REV__ENST00000425350.1_1_13:49151308-49151716:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.8135375976562	2	530.273175	1058.5318	-0.46053	-0.00024421	-4.4753	-0.0023731	-4.9358	-0.0026173	530.2708151952934	77.541	0.75108	77.541	77.167	77.918	0					22	15	2	0	0	0	0.03519	1	9630	9630		26.693	0	1	123990	+		9842	32248	6624	6638	11425	11425					0.004872572688100263
ECVESLAPLV	10	Unmodified	_ECVESLAPLV_					0	0	0			REV__ENST00000425350.1_1_13:49151308-49151716:-|nuORF	REV__ENST00000425350.1_1_13:49151308-49151716:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.273175	1058.5318	-0.062716	-3.3257E-05	-5.043	-0.0026741	-5.1057	-0.0027074	530.2702823882843	77.57	0.62273	77.359	77.122	77.745	-0.21087	-0.090986	-0.00019098	NaN	19.997	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104740	+		9843	32248	6624	6638							0.004872572688100263
ECVFREQF	8	Unmodified	_ECVFREQF_					0	0	0		ENSG00000196468|ENST00000439435|FGF16;ENST00000478546.1_1_13:22255254-22275571:+|nuORF;ENSG00000102678|ENST00000382353|FGF9	ENSG00000196468|ENST00000439435|FGF16	ENSG00000196468|ENST00000439435|FGF16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2472534179688	2	529.242209	1056.46987	-1.0531	-0.00055735	-0.088121	-4.6637E-05	-1.1412	-0.00060399	529.2422221008374	44.413	0.42465	44.308	44.203	44.628	-0.10468					14	10	2	0	0	0	0.027866	1	4130	4130		12.207	0.69583	1	202720			9844	9879	6625	6639	11426	11426					-0.05611049359640674
ECVKLRPSD	9	Unmodified	_ECVKLRPSD_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3078002929688	2	523.768591	1045.52263	0.19826	0.00010384	-0.16149	-8.4585E-05	0.036766	1.9257E-05	524.27046775535	75.866	0.22696	75.69	75.507	75.734	-0.17548					8	5	2	0	0	0	0.024457	1	8981	8981		21.96	0	1	65804			9845	1388	6626	6640	11427	11427					0.0016890870317638473
ECVKQIKIN	9	Unmodified	_ECVKQIKIN_					0	0	0			REV__ENST00000480188.1_1_9:123719518-123724970:-|nuORF	REV__ENST00000480188.1_1_9:123719518-123724970:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.3048706054688	2	537.802434	1073.59032	-0.276	-0.00014843	-4.1677	-0.0022414	-4.4437	-0.0023898	537.8003756760894	68.503	0.40254	68.272	68.077	68.48	-0.23048					22	9	3	0	0	0	0.024381	1	7933	7933		29.15	0	1	275870	+		9846	21644	6627	6641	11428	11428					0.056463586339759786
ECVMYLGW	8	Unmodified	_ECVMYLGW_					0	0	0			REV__ENST00000443722.5_1_7:102939135-102952660:+|nuORF	REV__ENST00000443722.5_1_7:102939135-102952660:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.71527099609375	2	500.716981	999.41941	-0.041557	-2.0809E-05	-0.67437	-0.00033767	-0.71593	-0.00035848	500.71650096795923	71.287	0.90787	71.028	70.694	71.602	-0.25856					58	21	4	0	0	0	0.98906	1	8355	8355		39.021	3.4032	1	2644100	+		9847	21567	6628	6642	11429	11429					-0.08032295009002155
ECVPYMEQKV	10	Unmodified	_ECVPYMEQKV_					0	0	0		ENSG00000117114|ENST00000686636|ADGRL2	ENSG00000117114|ENST00000686636|ADGRL2	ENSG00000117114|ENST00000686636|ADGRL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.18304443359375	3	409.191237	1224.55188	0.20002	8.1848E-05	3.5736	0.0014623	3.7736	0.0015441	409.19272070277896	24.973	0.22301	24.798	24.598	24.821	-0.17484					7	4	2	0	0	0	0.03519	1	1119	1119		45.022	0	1	53312			9848	3607	6629	6643	11430	11430					-0.05141315062883223
ECVSSWKYGFI	11	Unmodified	_ECVSSWKYGFI_					0	0	0		ENST00000432045.6_1_7:130597755-130597818:-|nuORF	ENST00000432045.6_1_7:130597755-130597818:-|nuORF	ENST00000432045.6_1_7:130597755-130597818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	440.2106628417969	3	440.209396	1317.60636	0.15575	6.8564E-05	2.5725	0.0011324	2.7283	0.001201	440.210440869061	50.822	0.70493	50.546	50.224	50.929	-0.27643					57	18	4	0	0	0	0.99129	1	5177	5177		38.754	2.436	1	3122200			9849	14194	6630	6644	11431	11431					-0.0397397991980597
ECYDTRTESWH	11	Unmodified	_ECYDTRTESWH_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;ENST00000469576.1_1_7:23207465-23207669:+|nuORF	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2604064941406	3	476.194586	1425.56193	0.45402	0.0002162	4.4671	0.0021272	4.9212	0.0023434	476.1967036039426	43.401	0.36224	43.432	43.267	43.629	0.030827					16	9	2	0	0	0	0.024851	1	3997	3997		9.6461	0.43434	1	285700			9850	3931	6631	6645	11432	11432					-0.13383035803917664
ECYKLVSI	8	Unmodified	_ECYKLVSI_					0	0	0			REV__ENST00000492423.5_1_2:232651186-232653667:+|nuORF	REV__ENST00000492423.5_1_2:232651186-232653667:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.23565673828125	2	477.751879	953.489204	-0.38505	-0.00018396	4.3148	0.0020614	3.9297	0.0018774	477.75391496187007	45.124	0.98611	44.975	44.628	45.614	-0.1488					65	28	3	0	0	0	0.027866	1	4359	4359		30.504	0	1	1721500	+		9851	33740	6632	6646	11433	11433					0.010599069312661413
ECYPCIVAVL	10	Unmodified	_ECYPCIVAVL_					0	0	0			REV__nc|ENSG00000104231|Q8TCF1-3|ZFAND1;REV__nc|ENSG00000104231|Q8TCF1-4|ZFAND1	REV__nc|ENSG00000104231|Q8TCF1-4|ZFAND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.8058471679688	2	555.272121	1108.52969	-0.23855	-0.00013246	1.6138	0.00089609	1.3752	0.00076363	555.2727561003086	33.245	0.58644	33.045	32.855	33.442	-0.20019					23	14	2	0	0	0	0.03519	1	2358	2358		11.511	0	1	161360	+		9852	21427;36530	6633	6647	11434	11434					-0.020234947406379433
ECYPYVGIL	9	Unmodified	_ECYPYVGIL_					0	0	0		LEMD2|p.R435C|1|0.43|ENSG00000161904|chr6:33777012-33777012|G/A|missense_variant	LEMD2|p.R435C|1|0.43|ENSG00000161904|chr6:33777012-33777012|G/A|missense_variant	LEMD2|p.R435C|1|0.43|ENSG00000161904|chr6:33777012-33777012|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3219604492188	2	528.757161	1055.49977	0.42007	0.00022211	-0.83244	-0.00044016	-0.41237	-0.00021804	528.7571772712973	83.151	0.25856	82.939	82.747	83.005	-0.2119					7	5	2	0	0	0	0.024386	1	9994	9994		25.45	15.185	1	21816			9853	17913	6634	6648	11435	11435					-0.02576110414292998
EDAAPKDSST	10	Unmodified	_EDAAPKDSST_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.76458740234375	2	510.727643	1019.44073	-0.76892	-0.00039271	2.4751	0.0012641	1.7062	0.00087139	510.7289377194582	25.653	0.25323	25.618	25.556	25.809	-0.034395					6	5	2	0	0	0	0.03519	1	1226	1226		31.53	0	1	23082			9854	5122	6635	6649	11436	11436					-0.06820915174944275
EDAAVKVK	8	Unmodified	_EDAAVKVK_					0	0	0			REV__ENST00000412580.1_1_2:122466160-122466664:-|nuORF	REV__ENST00000412580.1_1_2:122466160-122466664:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.9063720703125	2	430.247818	858.481082	-0.62197	-0.0002676	2.2875	0.00098421	1.6656	0.00071661	430.24867503810003	37.622	1.2229	37.412	37.114	38.336	-0.2092					68	33	4	0	0	0	0.027866	1	3145	3145		12.207	0	1	2279400	+		9855	32002	6636	6650	11437	11437					0.04618096006151973
EDACEMSGQYF	11	Unmodified	_EDACEMSGQYF_					0	0	0			REV__ENSG00000138303|ENST00000672957|ASCC1	REV__ENSG00000138303|ENST00000672957|ASCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.5791931152344	3	427.158373	1278.45329	0.17882	7.6385E-05	-2.5323	-0.0010817	-2.3534	-0.0010053	427.1572663303106	36.577	0.36103	36.372	36.164	36.525	-0.20518					14	8	2	0	0	0	0.024801	1	2852	2852		17.833	1.9125	1	74274	+		9856	23838	6637	6651	11438	11438					-0.17479963098548978
EDADKLIQV	9	Unmodified	_EDADKLIQV_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7625122070312	2	515.774396	1029.53424	-0.15691	-8.0932E-05	1.0109	0.00052142	0.85403	0.00044049	515.7745065100167	67.653	0.91171	67.364	66.911	67.823	-0.28834					50	22	4	0	0	0	0.021219	1	8049	8049		124.08	28.265	1	1693700			9857	653	6638	6652	11439	11439					0.02065428998139396
EDAEKENIE	9	Unmodified	_EDAEKENIE_					0	0	0		SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant;nc|ENSG00000135250|P78362|SRPK2;ENSG00000135250|ENST00000393651|SRPK2	SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7432250976562	2	538.740751	1075.46695	-0.41327	-0.00022265	4.3257	0.0023305	3.9125	0.0021078	538.7428551826441	61.341	0.73709	61.135	60.772	61.509	-0.20599					45	17	4	0	0	0	0.82115	1	6867	6867		37.812	0.78304	1	1182800			9858	4871	6639	6653	11440	11440					-0.06776646003459064
EDAFRVRFP	9	Unmodified	_EDAFRVRFP_					0	0	0			REV__ENSG00000179058|ENST00000372478|C9orf50	REV__ENSG00000179058|ENST00000372478|C9orf50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.8286743164062	2	568.795998	1135.57744	0.43788	0.00024906	-1.6148	-0.00091849	-1.1769	-0.00066943	568.7927844524577	49.876	0.63802	49.696	49.495	50.133	-0.18071					25	16	2	0	0	0	0.024374	1	5083	5083		25.574	0	1	268580	+		9859	27233	6640	6654	11441	11441					0.015076635660989268
EDAGRKEPGRI	11	Unmodified	_EDAGRKEPGRI_					0	0	0			REV__nc|ENSG00000075856|Q15020-4|SART3	REV__nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.8861999511719	3	409.886192	1226.63675	0.21358	8.7542E-05	-0.40554	-0.00016622	-0.19196	-7.8682E-05	409.8861102460467	34.475	1.5742	34.47	34.152	35.726	-0.0045624					112	40	5	0	0	0	0.94699	1	2569	2569		48.602	3.5793	1	12390000	+		9860	20558	6641	6655	11442	11442					0.03249514789604291
EDAIEAVNL	9	Unmodified	_EDAIEAVNL_					0	0	0			REV__ENSG00000067646|ENST00000155093|ZFY	REV__ENSG00000067646|ENST00000155093|ZFY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7901306152344	2	487.245472	972.476391	0.28607	0.00013938	3.6126	0.0017602	3.8987	0.0018996	487.2478242361825	81.368	1.3225	81.175	80.521	81.844	-0.19333					53	31	3	0	0	0	0.023274	1	9774	9774		67.494	0	1	200740	+		9861	20363	6642	6656	11443	11443					-0.010948329272878254
EDALFLVYL	9	Unmodified	_EDALFLVYL_					0	0	0			REV__ENSG00000119523|ENST00000476832|ALG2	REV__ENSG00000119523|ENST00000476832|ALG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.2456665039062	2	541.792058	1081.56956	-0.53087	-0.00028762	1.0435	0.00056535	0.5126	0.00027773	541.7923261693509	89.977	0.60973	89.99	89.756	90.366	0.013435					30	14	3	0	0	0	0.024325	1	11270	11270		31.955	10.253	1	332360	+		9862	22462	6643	6657	11444	11444					0.032040915259585745
EDASLKRHL	9	Unmodified	_EDASLKRHL_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3;ENST00000486758.5_1_4:77631429-77663226:+|nuORF	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3206176757812	2	534.793455	1067.57236	0.22629	0.00012102	1.4005	0.00074896	1.6268	0.00086998	534.7944133724083	96.597	0.39597	96.603	96.397	96.793	0.0065002					11	8	2	0	0	0	0.024447	1	12259	12259		32.812	4.7309	1	42082			9863	5283	6644	6658	11445	11445					0.041273597034887644
EDATDKLNL	9	Unmodified	_EDATDKLNL_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2908630371094	2	509.756204	1017.49785	0.32068	0.00016347	-0.43119	-0.0002198	-0.11052	-5.6336E-05	509.7558861796369	57.59	0.38151	57.415	57.19	57.571	-0.1749					16	9	2	0	0	0	0.0242	1	6471	6471		35.152	0	1	394270			9864	3209	6645	6659	11446	11446					-0.010194478985567912
EDATEDCY	8	Unmodified	_EDATEDCY_					0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7744445800781	2	473.160748	944.306942	-0.012329	-5.8338E-06	-2.2995	-0.001088	-2.3118	-0.0010939	473.1596557242965	37.189	0.23017	36.98	36.883	37.114	-0.2092					8	5	2	0	0	0	0.027866	1	2946	2946		13.775	0	1	76204	+		9865	19182;20344	6646	6660	11447	11447					-0.16743897272158392
EDAVRVPI	8	Unmodified	_EDAVRVPI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.206787109375	2	449.753267	897.491981	1.2224	0.00054976	-1.0101	-0.00045428	0.21228	9.5475E-05	449.7527329980459	23.012	0.75851	22.821	22.526	23.284	-0.19117					38	16	3	0	0	0	0.027866	1	807	807		19.36	0	1	269690	+		9866	24756	6647	6661	11448	11448					0.03913498380427427
EDCEHRLLE	9	Unmodified	_EDCEHRLLE_					0	0	0		ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	ENSG00000090863|ENST00000422840|GLG1	ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.340087890625	2	572.258588	1142.50262	0.54917	0.00031427	-4.2949	-0.0024578	-3.7457	-0.0021435	572.2561315728719	72.194	0.969	71.912	71.658	72.627	-0.28124					38	24	2	0	0	0	0.024374	1	8793	8793		32.812	0	1	582240			9867	1942	6648	6662	11449	11449					-0.06292887027439065
EDCKILIV	8	Carbamidomethyl (C)	_EDC(Carbamidomethyl (C))KILIV_	EDC(1)KILIV		EDC(130)KILIV		0	1	0			REV__ENSG00000136750|ENST00000376261|GAD2	REV__ENSG00000136750|ENST00000376261|GAD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2705383300781	2	495.270435	988.526318	0.75773	0.00037528	-1.2254	-0.00060691	-0.46768	-0.00023163	495.2697298626049	77.876	2.0704	77.634	77.276	79.346	-0.24232					95	48	3	0	0	0	0.24207	1	9286	9286		133.47	7.655	1	6524500	+		9868	23679	6649	6663	11450	11450	308				0.03159578477038849
EDCKYPKEET	10	Unmodified	_EDCKYPKEET_					0	0	0			REV__ENST00000527740.1_1_8:145998653-146003561:-|nuORF	REV__ENST00000527740.1_1_8:145998653-146003561:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.880859375	3	414.516666	1240.52817	-0.62713	-0.00025995	-0.20119	-8.3395E-05	-0.82831	-0.00034335	414.515013797221	29.244	0.26236	29.072	28.937	29.199	-0.17258					6	5	2	0	0	0	0.03519	1	1762	1762		52.167	7.5277	1	16795	+		9869	25282	6650	6664	11451	11451					-0.08247457295692584
EDCQYPKKGT	10	Unmodified	_EDCQYPKKGT_					0	0	0			REV__ENSG00000196350|ENST00000601693|ZNF729	REV__ENSG00000196350|ENST00000601693|ZNF729	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.298095703125	2	584.768788	1167.52302	-1.5621	-0.00091349	-3.6703	-0.0021463	-5.2324	-0.0030597	584.7663026849698	44.277	0.27736	44.058	43.864	44.142	-0.21939					13	7	2	0	0	0	0.03519	1	4089	4089		37.812	0	1	146330	+		9870	28168	6651	6665	11452	11452					-0.054037163676639466
EDDCGDGSDE	10	Unmodified	_EDDCGDGSDE_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3059692382812	2	521.151108	1040.28766	-0.57998	-0.00030226	-2.9135	-0.0015184	-3.4935	-0.0018206	521.6524356659442	47.129	0.24866	47.129	47.003	47.252	0					10	6	3	0	0	0	0.03519	1	4693	4693		9.7057	5.0239	1	276840			9871	3974	6652	6666	11453	11453					-0.23086898353722063
EDDCLAFKV	9	Unmodified	_EDDCLAFKV_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000599899.5_1_19:6677895-6682275:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2415771484375	2	520.241875	1038.4692	-1.1357	-0.00059085	1.5194	0.00079045	0.38368	0.0001996	520.2424014032068	86.068	1.0278	86.092	85.778	86.806	0.023666					49	23	3	0	0	0	0.2508	1	10742	10742		82.241	5.4664	1	800040			9872	4130	6653	6667	11454	11454					-0.04849888799344626
EDDDDSDSD	9	Unmodified	_EDDDDSDSD_					0	0	0			REV__ENSG00000118096|ENST00000264021|IFT46	REV__ENSG00000118096|ENST00000264021|IFT46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7142333984375	2	506.646713	1011.27887	-0.0090995	-4.6102E-06	-0.46132	-0.00023373	-0.47042	-0.00023834	506.64657104668316	34.203	0.14997	33.978	33.883	34.033	-0.22412					5	3	2	0	0	0	0.024541	1	2494	2494		7.1934	0	1	68093	+		9873	22387	6654	6668	11455	11455					-0.2263154871855022
EDDDDTIKTRA	11	Unmodified	_EDDDDTIKTRA_					0	0	0			REV__NCR2|p.S268T|1|0.32|ENSG00000096264|chr6:41350836-41350836|G/C|missense_variant	REV__NCR2|p.S268T|1|0.32|ENSG00000096264|chr6:41350836-41350836|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7296142578125	3	426.865123	1277.57354	-0.21303	-9.0935E-05	-4.401	-0.0018786	-4.614	-0.0019696	427.1984211722357	28.848	0.43107	28.679	28.38	28.812	-0.16897					10	9	2	0	0	0	0.024723	1	1726	1726		22.562	0.78116	1	16340	+		9874	37269	6655	6669	11456	11456					-0.054145155089372565
EDDDEDDDP	9	Unmodified	_EDDDEDDDP_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-2|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7844848632812	2	532.662363	1063.31017	-0.49356	-0.0002629	-2.3771	-0.0012662	-2.8707	-0.0015291	532.6620822704335	45.731	0.24162	45.774	45.716	45.958	0.04388					8	6	2	0	0	0	0.024457	1	4402	4402		29.15	6.1071	1	280630	+		9875	21151	6656	6670	11457	11457					-0.2189497568444949
EDDDRRLLYR	10	Unmodified	_EDDDRRLLYR_					0	0	0			REV__ENST00000540175.1_1_12:20704556-20705942:+|nuORF	REV__ENST00000540175.1_1_12:20704556-20705942:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7610168457031	3	450.896869	1349.66878	0.64114	0.00028909	-2.5819	-0.0011642	-1.9408	-0.0008751	450.89551882909984	22.107	0.37844	21.918	21.723	22.102	-0.18894					17	7	3	0	0	0	0.03519	1	775	775		25.126	0	1	65587	+		9876	19398	6657	6671	11458	11458					0.007928824727514439
EDDECDGDAP	10	Unmodified	_EDDECDGDAP_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2409057617188	2	533.169301	1064.32405	-0.21799	-0.00011623	1.2838	0.00068448	1.0658	0.00056825	533.1698909247133	34.353	0.57635	34.129	33.803	34.379	-0.22412					36	14	4	0	0	0	0.03519	1	2521	2521		40.778	21.418	1	532540	+		9877	26757	6658	6672	11459	11459					-0.20554021456996452
EDDECDGDAP	10	Unmodified	_EDDECDGDAP_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-2|DMRT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2413330078125	2	533.169301	1064.32405	-0.6737	-0.00035919	1.8516	0.00098719	1.1779	0.000628	533.1701615991473	34.129	0.61554	33.922	33.627	34.242	-0.20696					42	15	4	0	0	0	0.03519	1	2495	2495		35.618	5.1146	1	513490	+		9878	26757	6658	6672	11460	11460					-0.20554021456996452
EDDFEMFYET	10	Unmodified	_EDDFEMFYET_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.25933837890625	3	442.500793	1324.48055	-0.20312	-8.9879E-05	0.95604	0.00042305	0.75292	0.00033317	442.83430604949575	27.399	0.22312	27.386	27.277	27.5	-0.012983					8	5	2	0	0	0	0.03519	1	1478	1478		10.104	0	1	30846			9879	816	6659	6673	11461	11461					-0.16871156286515543
EDDFLQDL	8	Unmodified	_EDDFLQDL_					0	0	0			REV__SERBP1|p.F17L|1|0.5|ENSG00000142864|chr1:67430250-67430250|G/C|missense_variant	REV__SERBP1|p.F17L|1|0.5|ENSG00000142864|chr1:67430250-67430250|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.8094482421875	2	497.72183	993.429106	0.1246	6.2018E-05	-2.9772	-0.0014818	-2.8526	-0.0014198	497.7202200843885	23.271	0.74104	23.069	22.826	23.567	-0.20193					23	16	2	0	0	0	0.027866	1	920	920		35.618	0	1	108950	+		9880	37475	6660	6674	11462	11462					-0.06787112198264822
EDDGIDWADS	10	Unmodified	_EDDGIDWADS_					0	0	0			REV__ENSG00000065491|ENST00000373491|TBC1D22B	REV__ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2738037109375	2	561.714733	1121.41491	-0.71667	-0.00040256	-1.9086	-0.0010721	-2.6253	-0.0014747	561.7133915689715	45.488	0.42742	45.277	45.056	45.484	-0.21109					23	12	2	0	0	0	0.03519	1	4288	4288		27.882	0	1	262610	+		9881	20311	6661	6675	11463	11463					-0.1409380941722702
EDDHLTSIT	9	Unmodified	_EDDHLTSIT_					0	0	0			REV__ENSG00000129933|ENST00000262815|MAU2	REV__ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7429809570312	2	515.738011	1029.46147	-0.021711	-1.1197E-05	2.7926	0.0014403	2.7709	0.0014291	515.739141621015	69.925	0.24489	69.925	69.71	69.954	0					9	5	2	0	0	0	0.024427	1	8435	8435		26.693	1.1189	1	167700	+		9882	23067	6662	6676	11464	11464					-0.0520832479528508
EDDKFCLDLLT	11	Unmodified	_EDDKFCLDLLT_					0	0	0		ENST00000445028.1_1_X:43137608-43138196:-|nuORF	ENST00000445028.1_1_X:43137608-43138196:-|nuORF	ENST00000445028.1_1_X:43137608-43138196:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.87506103515625	3	437.876083	1310.60642	0.51084	0.00022368	-2.9824	-0.0013059	-2.4715	-0.0010822	437.87466561660625	42.32	0.83592	42.32	41.987	42.823	0					57	23	3	0	0	0	0.96926	1	3893	3893		43.651	10.611	1	2888500			9883	14433	6663	6677	11465	11465					-0.03646024710428719
EDDNNSSRSR	10	Unmodified	_EDDNNSSRSR_					0	0	0			REV__nc|ENSG00000196628|P15884-11|TCF4	REV__nc|ENSG00000196628|P15884-11|TCF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.8192138671875	2	590.252879	1178.49121	-0.75074	-0.00044313	1.1685	0.00068969	0.41772	0.00024656	590.2531617046416	69.987	0.86735	69.736	69.236	70.103	-0.25063					25	20	2	0	0	0	0.03519	1	8110	8110		36.447	0	1	113760	+		9884	37055	6664	6678	11466	11466					-0.09089992797225932
EDDPMPPVQ	9	Unmodified	_EDDPMPPVQ_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000475277.1_1_1:235876468-235887465:-|nuORF;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8138427734375	2	514.223682	1026.43281	-0.50195	-0.00025812	4.2379	0.0021792	3.7359	0.0019211	514.2255615572415	59.575	0.59207	59.661	59.426	60.018	0.085686					26	15	2	0	0	0	0.024323	1	6782	6782		35.618	7.736	1	255820			9885	5678	6665	6679	11467	11467					-0.0793476569606355
EDDTCLMVL	9	Unmodified	_EDDTCLMVL_					0	0	0		nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.26904296875	2	519.727743	1037.44093	-0.22534	-0.00011711	1.3959	0.0007255	1.1706	0.00060839	519.7281563782865	75.15	0.31984	74.906	74.757	75.077	-0.24455					11	7	2	0	0	0	0.024294	1	9193	9193		45.952	16.802	1	85371			9886	18303	6666	6680	11468	11468					-0.07628954770939345
EDEAASRKVE	10	Unmodified	_EDEAASRKVE_					0	0	0		nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP;nc|ENSG00000146147|Q5VWP3-2|MLIP;LRRC1-MLIP|2|fusion;nc|ENSG00000146147|Q5VWP3-1|MLIP;LRRC1-MLIP|1|fusion	nc|ENSG00000146147|Q5VWP3-4|MLIP	nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.2767333984375	2	567.275292	1132.53603	0.58416	0.00033138	0.96133	0.00054534	1.5455	0.00087672	567.2752204241652	82.633	1.6741	82.413	82.043	83.717	-0.22015					68	38	3	0	0	0	1.0236	1	9965	9965		42.864	4.0581	1	822000			9887	5860	6667	6681	11469	11469					-0.024935619838970524
EDEDEDLGAPP	11	Unmodified	_EDEDEDLGAPP_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.80224609375	2	593.740948	1185.46734	-0.35735	-0.00021217	3.9899	0.0023689	3.6325	0.0021568	593.7432541362447	35.825	0.26825	35.626	35.44	35.708	-0.19829					9	7	2	0	0	0	0.024759	1	2728	2728		51.335	10.763	1	228800			9888	4672	6668	6682	11470	11470					-0.11797271074283344
EDEDFIHTV	9	Unmodified	_EDEDFIHTV_					0	0	0		ATP10D|p.D484H|1|0.47|ENSG00000145246|chr4:47546677-47546677|G/C|missense_variant	ATP10D|p.D484H|1|0.47|ENSG00000145246|chr4:47546677-47546677|G/C|missense_variant	ATP10D|p.D484H|1|0.47|ENSG00000145246|chr4:47546677-47546677|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7936401367188	2	552.745836	1103.47712	-0.65169	-0.00036022	-1.6241	-0.00089774	-2.2758	-0.001258	552.7444902848199	66.21	0.3597	65.997	65.834	66.194	-0.21328					12	8	2	0	0	0	0.024487	1	7604	7604		24.203	0	1	87862			9889	148	6669	6683	11471	11471					-0.07048038278253443
EDEEDNEEEER	11	Unmodified	_EDEEDNEEEER_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENST00000491313.5_1_10:99116853-99127090:-|nuORF;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7710876464844	3	474.842823	1421.50664	-0.33071	-0.00015703	-3.4734	-0.0016493	-3.8041	-0.0018063	474.841147498439	29.212	0.42704	29.063	28.869	29.296	-0.14952					13	9	2	0	0	0	0.024789	1	1775	1775		26.75	17.104	1	60592			9890	1153	6670	6684	11472	11472					-0.18725215581366683
EDEEEEIKL	9	Unmodified	_EDEEEEIKL_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4	ENSG00000071054|ENST00000324219|MAP4K4	ENSG00000071054|ENST00000324219|MAP4K4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.309326171875	2	567.264059	1132.51356	-0.57454	-0.00032591	-1.6768	-0.00095117	-2.2513	-0.0012771	567.2628809309062	69.429	0.78867	69.429	69.166	69.954	0					34	19	2	0	0	0	0.019995	1	8375	8375		113.41	8.665	1	123500			9891	1444	6671	6685	11473	11473					-0.0473920617218937
EDEEEEIKL	9	Unmodified	_EDEEEEIKL_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4	ENSG00000071054|ENST00000324219|MAP4K4	ENSG00000071054|ENST00000324219|MAP4K4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.8102416992188	2	567.264059	1132.51356	0.42874	0.00024321	-2.3013	-0.0013055	-1.8726	-0.0010622	567.2627199101419	69.739	0.75391	69.446	69.166	69.92	-0.29291					32	18	2	0	0	0	0.016885	1	8351	8351		131.03	17.62	1	141290			9892	1444	6671	6685	11474	11474					-0.0473920617218937
EDEEELSGTK	10	Unmodified	_EDEEELSGTK_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;ENST00000477340.5_1_20:62339420-62365174:+|nuORF	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.8102416992188	2	568.751315	1135.48808	0.3694	0.0002101	0.15714	8.9376E-05	0.52655	0.00029947	568.7513761420784	69.585	0.66306	69.292	68.97	69.633	-0.29291					26	16	2	0	0	0	0.03519	1	8351	8351		45.972	0	1	721030			9893	9955	6672	6686	11475	11475					-0.07424680694612107
EDEEHYADQ	9	Unmodified	_EDEEHYADQ_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4;ENSG00000114520|ENST00000251775|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.2298583984375	2	568.212357	1134.41016	-0.5752	-0.00032684	-4.3283	-0.0024594	-4.9035	-0.0027862	568.2098305359692	38.263	0.19228	38.044	37.957	38.15	-0.21849					7	5	2	0	0	0	0.024523	1	3143	3143		15.642	4.1308	1	100440			9894	14964	6673	6687	11476	11476					-0.15166693559990563
EDEEPKELETE	11	Unmodified	_EDEEPKELETE_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2607116699219	3	449.864788	1346.57254	0.040185	1.8078E-05	1.6004	0.00071997	1.6406	0.00073805	449.8652099743765	31.463	0.33363	31.222	31.073	31.407	-0.24109					17	8	3	0	0	0	0.024801	1	2078	2078		17.833	6.1972	1	136340			9895	3940	6674	6688	11477	11477					-0.08688774668507904
EDEEPSASPC	10	Unmodified	_EDEEPSASPC_					0	0	0			REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF	REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2385864257812	2	532.197861	1062.38117	-1.5168	-0.00080722	2.1949	0.0011681	0.67814	0.0003609	532.1989304200918	40.627	0.61304	40.397	40.12	40.733	-0.23029					29	16	2	0	0	0	0.03519	1	3468	3468		34.173	12.213	1	459690	+		9896	20776	6675	6689	11478	11478					-0.14752554180631705
EDEERRKREKE	11	Unmodified	_EDEERRKREKE_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29217529296875	3	501.921854	1502.74373	-0.66168	-0.00033211	2.3623	0.0011857	1.7007	0.0008536	501.92318681930107	45.152	1.002	45.052	44.354	45.356	-0.099445					51	26	3	0	0	0	0.024856	1	4312	4312		9.2118	0	1	824520	+		9897	28200	6676	6690	11479	11479					0.01247020213304495
EDEIKLLAL	9	Unmodified	_EDEIKLLAL_					0	0	0			REV__ENSG00000238269|ENST00000374971|PAGE2B	REV__ENSG00000238269|ENST00000374971|PAGE2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.302490234375	2	522.30279	1042.59103	-0.039967	-2.0875E-05	-0.52531	-0.00027437	-0.56527	-0.00029524	522.3024450505781	86.452	0.89885	86.452	86.085	86.984	0					28	20	2	0	0	0	0.024374	1	10840	10840		40.778	2.9666	1	336260	+		9898	28912	6677	6691	11480	11480					0.0714347655466554
EDEIKLLAL	9	Unmodified	_EDEIKLLAL_					0	0	0			REV__ENSG00000238269|ENST00000374971|PAGE2B	REV__ENSG00000238269|ENST00000374971|PAGE2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.30279	1042.59103	-0.17768	-9.2802E-05	-0.22748	-0.00011881	-0.40516	-0.00021162	522.3026439467653	86.457	0.73611	86.412	85.947	86.683	-0.045105	0.022411	-0.00016908	NaN	40.778	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258150	+		9899	28912	6677	6691							0.0714347655466554
EDEKKLNMK	9	Unmodified	_EDEKKLNMK_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.8121337890625	2	567.794806	1133.57506	-0.71513	-0.00040605	2.266	0.0012866	1.5509	0.00088057	567.7959243206786	71.167	0.4957	71.178	70.976	71.472	0.010735					28	12	3	0	0	0	0.024427	1	8544	8544		34.173	1.3601	1	236490			9900	8227	6678	6692	11481	11481					0.013614470460879602
EDELDCGGLPA	11	Unmodified	_EDELDCGGLPA_					0	0	0		nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3206176757812	2	559.737154	1117.45975	-0.28473	-0.00015937	1.3049	0.00073041	1.0202	0.00057103	559.7375211053285	72.968	0.55466	72.691	72.497	73.051	-0.2769					18	12	2	0	0	0	0.024735	1	8553	8553		14.137	0	1	146360			9901	18638	6679	6693	11482	11482					-0.09427701875529237
EDELPAGALLV	11	Unmodified	_EDELPAGALLV_					0	0	0			REV__ENSG00000149806|ENST00000529639|FAU	REV__ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8109741210938	2	563.803154	1125.59175	-0.14728	-8.3039E-05	2.5201	0.0014208	2.3728	0.0013378	563.8027857274413	107.08	0.742	107.08	106.7	107.44	-0.003479					75	24	4	0	0	0	1.0054	1	13691	13691		35.618	2.8059	1	189000	+		9902	24702	6680	6694	11483	11483					0.0339827120371865
EDELQAILN	9	Unmodified	_EDELQAILN_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.2472534179688	2	522.764029	1043.5135	0.34731	0.00018156	1.7266	0.00090262	2.0739	0.0010842	522.7648046303592	83.691	0.54544	83.553	83.212	83.757	-0.13861					15	12	2	0	0	0	0.024427	1	10066	10066		26.693	0	1	93436			9903	10155	6681	6695	11484	11484					-0.0065116138150642655
EDELWASFL	9	Unmodified	_EDELWASFL_					0	0	0		nc|ENSG00000153774|Q9UEE9-2|CFDP1;ENST00000566901.5_1_16:75428986-75467250:-|nuORF;ENSG00000153774|ENST00000283882|CFDP1	nc|ENSG00000153774|Q9UEE9-2|CFDP1	nc|ENSG00000153774|Q9UEE9-2|CFDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7771606445312	2	555.261122	1108.50769	-0.072484	-4.0248E-05	0.22082	0.00012261	0.14834	8.2365E-05	555.261699410578	76.545	0.46562	76.276	76.129	76.595	-0.26806					16	10	2	0	0	0	0.024436	1	9106	9106		30.504	0	1	68853			9904	6355	6682	6696	11485	11485					-0.04222259893185765
EDETFQESN	9	Unmodified	_EDETFQESN_					0	0	0		HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant;HEPH|p.R1086Efs*8|1|0.77|ENSG00000089472|chrX:66266445-66266445|C/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant	HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.276123046875	2	549.714733	1097.41491	-0.63613	-0.00034969	1.128	0.00062009	0.4919	0.0002704	549.7152071722356	46.639	0.44325	46.69	46.544	46.987	0.051395					16	11	2	0	0	0	0.024405	1	4567	4567		14.865	0	1	109460			9905	1907	6683	6697	11486	11486					-0.12989809417217657
EDEVELNNK	9	Unmodified	_EDEVELNNK_					0	0	0			REV__ENSG00000162438|ENST00000375949|CTRC	REV__ENSG00000162438|ENST00000375949|CTRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8162231445312	2	545.256568	1088.49858	-0.48964	-0.00026698	3.8237	0.0020849	3.3341	0.0018179	545.2583959925573	67.351	0.36942	67.127	66.857	67.226	-0.22471					21	8	3	0	0	0	0.024397	1	7756	7756		47.657	1.6851	1	1093400	+		9906	25442	6684	6698	11487	11487					-0.04212653249533105
EDEVFADFF	9	Unmodified	_EDEVFADFF_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-6|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.2960815429688	2	559.73748	1117.46041	0.08374	4.6873E-05	0.16409	9.185E-05	0.24783	0.00013872	559.7374047087059	73.051	0.40984	72.77	72.547	72.957	-0.28124					15	9	2	0	0	0	0.024457	1	8836	8836		29.15	0	1	147660			9907	3871	6685	6699	11488	11488					-0.09362539164180816
EDEYEMESP	9	Unmodified	_EDEYEMESP_					0	0	0		nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-2|CD58	nc|ENSG00000116815|P19256-2|CD58	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.721923828125	2	564.705519	1127.39649	-0.16711	-9.4366E-05	-1.6818	-0.00094975	-1.849	-0.0010441	564.7050304354085	49.386	0.42037	49.285	49.147	49.567	-0.1008					11	10	2	0	0	0	0.024539	1	4948	4948		27.882	0	1	188130			9908	3580	6686	6700	11489	11489					-0.16211687383429307
EDEYMIQEE	9	Unmodified	_EDEYMIQEE_					0	0	0		nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.7931518554688	2	593.234444	1184.45433	-0.47734	-0.00028317	-1.3306	-0.00078936	-1.8079	-0.0010725	593.2336768621866	76.181	0.28854	76.012	75.892	76.181	-0.16854					9	6	2	0	0	0	0.024541	1	9017	9017		19.997	2.6318	1	60597			9909	1616	6687	6701	11490	11490					-0.13051425458002086
EDFEAPFL	8	Unmodified	_EDFEAPFL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6469421386719	2	484.224008	966.433463	0.17506	8.4767E-05	-4.3836	-0.0021227	-4.2086	-0.0020379	484.2219175803384	46.687	0.17646	46.59	46.506	46.682	-0.096649					6	4	2	0	0	0	0.027866	1	4517	4517		42.474	0	1	112270			9910	1039	6688	6702	11491	11491					-0.051096029847144564
EDFEAPFL	8	Unmodified	_EDFEAPFL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.6468200683594	2	484.224008	966.433463	-0.23185	-0.00011227	-2.49	-0.0012057	-2.7219	-0.001318	484.22240443307976	46.755	0.26278	46.561	46.449	46.712	-0.19387					10	7	2	0	0	0	0.027866	1	4534	4534		42.474	0	1	169440			9911	1039	6688	6702	11492	11492					-0.051096029847144564
EDFELQLN	8	Unmodified	_EDFELQLN_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7817687988281	2	504.237647	1006.46074	0.17002	8.5729E-05	3.2506	0.0016391	3.4206	0.0017248	504.2389182411593	51.896	0.4387	51.712	51.524	51.963	-0.18404					23	11	3	0	0	0	0.027866	1	5387	5387		37.159	11.709	1	183670			9912	2187	6689	6703	11493	11493					-0.04223119444316126
EDFIALLN	8	Unmodified	_EDFIALLN_					0	0	0			REV__nc|ENSG00000119682|O15033-2|AREL1	REV__nc|ENSG00000119682|O15033-2|AREL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7684020996094	2	467.74765	933.480748	1.2118	0.00056684	2.3518	0.0011	3.5636	0.0016669	467.74868118965475	73.919	1.4909	73.919	73.741	75.232	0					69	35	2	0	0	0	0.027866	1	9080	9080		35.201	14.254	1	343060	+		9913	22473	6690	6704	11494	11494					0.011346762862672222
EDFKGEKPL	9	Unmodified	_EDFKGEKPL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2796630859375	2	531.776939	1061.53933	-0.18625	-9.9043E-05	1.3689	0.00072796	1.1827	0.00062891	532.2793937099751	81.105	0.98004	80.901	80.346	81.326	-0.2036					57	23	3	0	0	0	0.45795	1	9750	9750		62.107	12.666	1	1278200	+		9914	22027	6691	6705	11495	11495					0.011017328607522359
EDFKGEKPL	9	Unmodified	_EDFKGEKPL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.776939	1061.53933	-1.0371	-0.00055152	1.9296	0.0010261	0.89247	0.00047459	532.2798214168706	81.007	0.9255	81.007	80.746	81.671	0	0.02819	9.3377E-05	NaN	62.107	60	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1000300	+		9915	22027	6691	6705							0.011017328607522359
EDFKGEKPL	9	Unmodified	_EDFKGEKPL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.776939	1061.53933	-1.1855	-0.00063044	2.3192	0.0012333	1.1337	0.00060288	532.2799746756338	81.196	1.0013	81.066	80.82	81.821	-0.13075	0.087058	0.00050778	NaN	62.107	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1115600	+		9916	22027	6691	6705							0.011017328607522359
EDFKGEKPL	9	Unmodified	_EDFKGEKPL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.776939	1061.53933	-1.1036	-0.00058685	1.9448	0.0010342	0.84125	0.00044736	532.2798454088048	81.013	0.75931	81.037	80.775	81.534	0.023911	0.058253	0.00010955	NaN	62.107	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1282400	+		9917	22027	6691	6705							0.011017328607522359
EDFKGEKPL	9	Unmodified	_EDFKGEKPL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.776939	1061.53933	-0.0068963	-3.6673E-06	1.677	0.00089178	1.6701	0.00088811	532.279635069255	81.12	1.1437	80.883	80.369	81.513	-0.23784	-0.09591	-0.0001753	NaN	62.107	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1203700	+		9918	22027	6691	6705							0.011017328607522359
EDFKGEKPL	9	Unmodified	_EDFKGEKPL_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	531.776939	1061.53933	-0.18625	-9.9043E-05	1.3689	0.00072796	1.1827	0.00062891	532.2793937099751	81.105	0.98004	80.901	80.346	81.326	-0.2036	-0.07759	-0.00050294	NaN	62.107	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1278200	+		9919	22027	6691	6705							0.011017328607522359
EDFKRIQL	8	Unmodified	_EDFKRIQL_					0	0	0		ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7	ENSG00000083223|ENST00000375963|TUT7	ENSG00000083223|ENST00000375963|TUT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7937622070312	2	524.792924	1047.57129	-0.35708	-0.00018739	1.2106	0.00063529	0.85348	0.0004479	524.7934044782385	70	0.39005	70	69.75	70.14	0					16	11	2	0	0	0	0.89627	1	8459	8459		51.335	3.6781	1	1309500			9920	1748	6692	6706	11496	11496					0.049411453345555856
EDFLMGYHATR	11	Unmodified	_EDFLMGYHATR_					0	0	0			REV__ENSG00000197712|ENST00000358869|FAM114A1	REV__ENSG00000197712|ENST00000358869|FAM114A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.74346923828125	3	447.208167	1338.60267	0.62767	0.0002807	3.8515	0.0017224	4.4792	0.0020031	447.54410387621715	22.661	1.0761	22.459	21.855	22.932	-0.20199					43	22	3	0	0	0	0.024735	1	739	739		21.78	0	1	65101	+		9921	28339	6693	6707	11497	11497					-0.05308649693665757
EDFMKAVRKV	10	Unmodified	_EDFMKAVRKV_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.6959228515625	3	408.225269	1221.65398	0.19077	7.7875E-05	-2.4306	-0.00099223	-2.2398	-0.00091435	408.22428766393205	36.772	0.52262	36.556	36.326	36.849	-0.21661					18	12	2	0	0	0	0.03519	1	2887	2887		6.6596	0	1	621880			9922	2211	6694	6708	11498	11498					0.0520171907103304
EDFMRRIE	8	Unmodified	_EDFMRRIE_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3239135742188	2	548.266216	1094.51788	-0.33744	-0.00018501	-3.6242	-0.001987	-3.9617	-0.002172	548.2639727888852	75.495	0.52572	75.222	74.976	75.502	-0.27267					19	12	2	0	0	0	0.027866	1	8894	8894		30.504	5.0535	1	171880			9923	3351	6695	6709	11499	11499					-0.025599754396125718
EDFNRHLD	8	Unmodified	_EDFNRHLD_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.30419921875	2	523.238513	1044.46247	-1.0693	-0.00055952	-0.35124	-0.00018378	-1.4206	-0.0007433	523.2382176563542	83.105	0.43026	83.105	82.878	83.309	0					16	9	2	0	0	0	0.027866	1	10362	10362		17.365	0	1	69714			9924	2630	6696	6710	11500	11500					-0.057980656357358384
EDFPPRIVE	9	Unmodified	_EDFPPRIVE_					0	0	0		ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant;nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ROBO1|p.L345*|1|0.51|ENSG00000169855|chr3:78714409-78714409|G/-|frameshift_variant	ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant;ENSG00000169855|ENST00000464233|ROBO1	ENSG00000169855|ENST00000464233|ROBO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.302978515625	2	551.282389	1100.55022	-0.57422	-0.00031656	-4.0074	-0.0022092	-4.5817	-0.0025258	551.2802631985055	33.817	0.34612	33.817	33.626	33.972	0					12	8	2	0	0	0	0.024511	1	2444	2444		25.574	8.2091	1	83720			9925	7980;9395	6697	6711	11501	11501					0.003971352350617963
EDFPPVLEI	9	Unmodified	_EDFPPVLEI_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF;ENST00000487188.1_1_1:12371595-12395946:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3182983398438	2	529.773865	1057.53318	-0.26905	-0.00014253	-2.2215	-0.0011769	-2.4905	-0.0013194	529.7727617202023	72.345	0.90285	72.345	72.091	72.994	0					35	21	3	0	0	0	0.024457	1	8867	8867		29.15	6.1071	1	388220			9926	1119	6698	6712	11502	11502					0.006712146292329635
EDFPPVLEIQ	10	Unmodified	_EDFPPVLEIQ_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF;ENST00000487188.1_1_1:12371595-12395946:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.8016967773438	2	593.803154	1185.59175	-1.1868	-0.00070472	-1.5328	-0.00091017	-2.7196	-0.0016149	593.8023054283966	35.942	2.4854	35.737	35.428	37.913	-0.20518					202	66	5	0	0	0	0.98754	1	2747	2747		47.657	0	1	98507000			9927	1119	6699	6713	11503	11503					0.006382712037066085
EDFPPVLEIQ	10	Unmodified	_EDFPPVLEIQ_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF;ENST00000487188.1_1_1:12371595-12395946:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8020629882812	2	593.803154	1185.59175	-0.22649	-0.00013449	-2.4519	-0.0014559	-2.6784	-0.0015904	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.91678	1	2813	2813		52.937	1.744	1	111520000			9928	1119	6699	6713	11504	11504					0.006382712037066085
EDFRVIGPA	9	Unmodified	_EDFRVIGPA_					0	0	0		nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2;nc|ENSG00000204290|Q9UIR0-3|BTNL2;nc|ENSG00000204290|Q9UIR0-2|BTNL2;nc|ENSG00000204290|Q9UIR0-8|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.75531005859375	2	502.263999	1002.51345	-0.11878	-5.9659E-05	0.37847	0.00019009	0.25969	0.00013043	502.263926545338	47.677	0.73895	47.49	47.239	47.978	-0.18684					33	19	3	0	0	0	0.024466	1	4648	4648		18.324	0	1	795180			9929	10323	6700	6714	11505	11505					0.012288834091350509
EDFTELVE	8	Unmodified	_EDFTELVE_					0	0	0		ENSG00000178445|ENST00000321612|GLDC;GLDC|p.H284Y|1|0.17|ENSG00000178445|chr9:6605142-6605142|G/A|missense_variant;ENST00000510885.2_1_4:57459440-57459704:+|nuORF	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.79583740234375	2	491.224205	980.433857	0.41018	0.00020149	-3.8233	-0.0018781	-3.4132	-0.0016766	491.2222388313725	48.062	0.52496	47.875	47.596	48.121	-0.18684					18	13	2	0	0	0	0.027866	1	4711	4711		25.45	0	1	216930			9930	8813	6701	6715	11506	11506					-0.05714228055512649
EDFTMQISF	9	Unmodified	_EDFTMQISF_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T594Nfs*5|1|0.13|ENSG00000127914|chr7:92001697-92001712|ACAAATTACAAGATAA/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.264892578125	2	559.247157	1116.47976	-0.33998	-0.00019013	0.27463	0.00015358	-0.065356	-3.655E-05	559.2471362497955	84.178	0.67932	84.178	83.866	84.546	0					29	15	3	0	0	0	0.024477	1	10500	10500		27.882	14.923	1	169450			9931	4266	6702	6716	11507	11507					-0.07381906144928507
EDFVLLLTY	9	Unmodified	_EDFVLLLTY_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.797607421875	2	556.79734	1111.58013	0.46249	0.00025751	-0.098227	-5.4692E-05	0.36426	0.00020282	556.7971057712874	100.48	1.4358	100.35	100.1	101.54	-0.13364					61	36	4	0	0	0	0.022311	1	12451	12451		147.69	4.674	1	1447600			9932	920	6703	6717	11508	11508					0.028800741803934216
EDFVLLLTY	9	Unmodified	_EDFVLLLTY_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.8002319335938	2	556.79734	1111.58013	-0.085022	-4.734E-05	0.28045	0.00015615	0.19543	0.00010881	556.7973441309468	100.53	1.0825	100.36	100.16	101.24	-0.17088					51	28	4	0	0	0	0.4752	1	12494	12494		60.972	7.6205	1	1648100			9933	920	6703	6717	11509	11509					0.028800741803934216
EDFVSKQEQ	9	Unmodified	_EDFVSKQEQ_					0	0	0			REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7840576171875	2	555.259111	1108.50367	-0.2769	-0.00015375	-4.1392	-0.0022984	-4.4162	-0.0024521	555.2563663257625	69.527	0.8273	69.304	69.02	69.847	-0.22245					49	19	4	0	0	0	0.024495	1	8030	8030		26.693	14.486	1	663970	+		9934	25498	6704	6718	11510	11510					-0.04624349386904214
EDGGDESEM	9	Unmodified	_EDGGDESEM_					0	0	0		nc|ENSG00000144191|Q16281-3|CNGA3	nc|ENSG00000144191|Q16281-3|CNGA3	nc|ENSG00000144191|Q16281-3|CNGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7977600097656	2	484.661112	967.307671	0.14448	7.0024E-05	3.3444	0.0016209	3.4889	0.0016909	484.6650661230613	58.745	0.25465	58.836	58.635	58.89	0.091217					9	6	2	0	0	0	0.024506	1	6590	6590		30.504	0	1	82869			9935	18353	6705	6719	11511	11511					-0.1772910262309324
EDGLLVAAAL	10	Unmodified	_EDGLLVAAAL_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.21221923828125	2	486.274032	970.533512	-0.58936	-0.00028659	-1.9673	-0.00095664	-2.5566	-0.0012432	486.27229083923135	54.971	0.18687	54.824	54.761	54.948	-0.14609					7	4	2	0	0	0	0.03519	1	5864	5864		45.952	12.436	1	78744	+		9936	26342	6706	6720	11512	11512					0.0470663434908829
EDGLTHTLKI	10	Unmodified	_EDGLTHTLKI_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2994384765625	2	563.808771	1125.60299	0.16452	9.276E-05	4.4362	0.0025012	4.6007	0.0025939	563.810793878959	74.71	0.48508	74.71	74.551	75.036	0					15	11	2	0	0	0	0.03519	1	9131	9131		40.778	0	1	49746			9937	18550	6707	6721	11513	11513					0.0452109329785344
EDGNSDLEQY	10	Unmodified	_EDGNSDLEQY_					0	0	0			REV__LRGUK|p.D75N|1|0.13|ENSG00000155530|chr7:134127590-134127590|G/A|missense_variant	REV__LRGUK|p.D75N|1|0.13|ENSG00000155530|chr7:134127590-134127590|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.2953491210938	2	585.23329	1168.45203	-0.60503	-0.00035408	0.76853	0.00044977	0.16351	9.5691E-05	585.2336984071773	56.324	0.28236	56.168	56.052	56.334	-0.15655					11	6	2	0	0	0	0.03519	1	6104	6104		80.455	33.688	1	108010	+		9938	36323	6708	6722	11514	11514					-0.12546137871458996
EDGNSDLEQY	10	Unmodified	_EDGNSDLEQY_					0	0	0			REV__LRGUK|p.D75N|1|0.13|ENSG00000155530|chr7:134127590-134127590|G/A|missense_variant	REV__LRGUK|p.D75N|1|0.13|ENSG00000155530|chr7:134127590-134127590|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2951049804688	2	585.23329	1168.45203	-0.52305	-0.0003061	1.0122	0.00059236	0.48914	0.00028626	585.233758904626	56.509	0.35043	56.293	56.078	56.429	-0.21607					14	8	2	0	0	0	0.03519	1	6101	6101		109.48	40.632	1	140580	+		9939	36323	6708	6722	11515	11515					-0.12546137871458996
EDGRHIRLAAE	11	Unmodified	_EDGRHIRLAAE_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5472106933594	3	422.889825	1265.64765	0.004849	2.0506E-06	-4.1495	-0.0017548	-4.1447	-0.0017527	422.8881271402867	29.171	0.25894	29.022	28.912	29.171	-0.14952					6	5	2	0	0	0	0.024734	1	1750	1750		30.139	9.302	1	20298			9940	8096	6709	6723	11516	11516					0.025449171639365886
EDGSAGVRVL	10	Unmodified	_EDGSAGVRVL_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;ENST00000477340.5_1_20:62339420-62365174:+|nuORF;ENST00000478385.5_1_20:62340364-62366220:+|nuORF	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7775573730469	2	501.764363	1001.51417	0.48699	0.00024435	-1.3088	-0.00065671	-0.82181	-0.00041236	501.7645913297656	71.893	0.56425	71.893	71.566	72.131	0					21	14	2	0	0	0	0.03519	1	8698	8698		79.713	0	1	201890			9941	9955	6710	6724	11517	11517					0.013476780582095671
EDGSVLPSRGL	11	Unmodified	_EDGSVLPSRGL_					0	0	0			REV__ENSG00000164292|ENST00000379982|RHOBTB3	REV__ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.3526000976562	2	565.296027	1128.5775	0.5735	0.00032419	1.709	0.00096612	2.2825	0.0012903	565.2969763298445	87.344	0.50324	87.208	86.885	87.388	-0.13613					14	11	2	0	0	0	0.02474	1	10590	10590		40.058	0	1	62257	+		9942	25730	6711	6725	11518	11518					0.018356187754534403
EDGTSWVLEV	10	Unmodified	_EDGTSWVLEV_					0	0	0		ENST00000429315.3_1_3:47284501-47284678:+|nuORF	ENST00000429315.3_1_3:47284501-47284678:+|nuORF	ENST00000429315.3_1_3:47284501-47284678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3192749023438	2	567.769311	1133.52407	-1.1309	-0.0006421	2.5498	0.0014477	1.4189	0.00080563	567.7704583173196	57.314	0.69498	57.409	56.846	57.541	0.095306					29	18	2	0	0	0	0.03519	1	6318	6318		29.17	0	1	641380			9943	14141	6712	6726	11519	11519					-0.03735178727083621
EDHCHPQPL	9	Unmodified	_EDHCHPQPL_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.7992553710938	2	538.234916	1074.45528	-0.23713	-0.00012763	-3.4836	-0.001875	-3.7208	-0.0020027	538.2331308681801	87.2	0.54973	87.2	86.941	87.491	0					21	12	2	0	0	0	0.02435	1	10983	10983		51.335	0	1	80636			9944	6689	6713	6727	11520	11520					-0.07897121507789961
EDHGPSELLD	10	Unmodified	_EDHGPSELLD_					0	0	0		ENST00000477835.5_1_7:137075968-137139597:-|nuORF	ENST00000477835.5_1_7:137075968-137139597:-|nuORF	ENST00000477835.5_1_7:137075968-137139597:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.290771484375	2	556.248743	1110.48293	-0.87038	-0.00048415	0.85805	0.00047729	-0.012335	-6.8613E-06	556.2497846539013	61.176	0.43943	60.922	60.697	61.137	-0.25373					20	10	3	0	0	0	0.03519	1	6793	6793		10.265	0	1	115470			9945	15118	6714	6728	11521	11521					-0.06788939766556723
EDHLFSGDI	9	Unmodified	_EDHLFSGDI_					0	0	0			REV__ENSG00000153283|ENST00000352690|CD96	REV__ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2735595703125	2	516.735271	1031.45599	-0.58404	-0.0003018	-3.5855	-0.0018528	-4.1696	-0.0021546	516.7335327662792	45.579	0.3337	45.428	45.211	45.544	-0.15156					12	9	2	0	0	0	0.024457	1	4387	4387		29.15	2.4566	1	217070	+		9946	24897	6715	6729	11522	11522					-0.058480035870843494
EDHLKHLR	8	Unmodified	_EDHLKHLR_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2882080078125	2	524.28834	1046.56213	-1.3974	-0.00073262	0.68298	0.00035808	-0.71438	-0.00037454	524.2887223328601	28.554	1.0896	28.308	27.921	29.011	-0.24524					77	25	5	0	0	0	1.0106	1	1668	1668		35.618	0	1	3608600			9947	4728	6716	6730	11523	11523					0.04070796768883156
EDHRTKMEA	9	Oxidation (M)	_EDHRTKM(Oxidation (M))EA_		EDHRTKM(1)EA		EDHRTKM(62)EA	0	0	1			REV__ENSG00000183255|ENST00000330938|PTTG1IP	REV__ENSG00000183255|ENST00000330938|PTTG1IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.7546997070312	2	566.756212	1131.49787	0.14383	8.1514E-05	-3.4169	-0.0019366	-3.2731	-0.0018551	566.7540782504252	50.431	1.0461	50.326	50.011	51.057	-0.10558					54	27	3	0	0	0	0.45795	1	5124	5124		62.107	12.666	1	3395800	+		9948	27556	6717	6731	11524	11524		816			-0.06261771170193242
EDHTFGSPSL	10	Unmodified	_EDHTFGSPSL_					0	0	0			REV__chr21:43776336-43791350|159|13.49|0.47|4.83|+|2|None,RRP1|1	REV__chr21:43776336-43791350|159|13.49|0.47|4.83|+|2|None,RRP1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.7671508789062	2	545.246003	1088.47745	-0.22616	-0.00012331	0.21196	0.00011557	-0.0142	-7.7423E-06	545.2461891796152	46.802	0.42507	46.532	46.304	46.73	-0.26939					18	11	2	0	0	0	0.03519	1	4499	4499		24.519	0	1	295170	+		9949	19423	6718	6732	11525	11525					-0.06324618558369366
EDHYREGGIG	10	Unmodified	_EDHYREGGIG_					0	0	0		ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.8031005859375	2	566.754527	1131.4945	-0.20867	-0.00011826	-2.5005	-0.0014172	-2.7091	-0.0015354	566.7529418221019	77.794	0.63959	77.632	77.268	77.908	-0.16196					34	14	3	0	0	0	0.03519	1	9290	9290		3.41	0	1	697130			9950	6166	6719	6733	11526	11526					-0.0659869795256327
EDIARLEDEI	10	Unmodified	_EDIARLEDEI_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5596008300781	3	401.534825	1201.58265	0.61496	0.00024693	0.62177	0.00024966	1.2367	0.00049659	401.5351141516558	35.331	0.46837	35.119	34.886	35.354	-0.21246					23	11	3	0	0	0	0.03519	1	2699	2699		27.644	5.0643	1	116720	+		9951	19687	6720	6734	11527	11527					-0.010081221525979345
EDIAVIRN	8	Unmodified	_EDIAVIRN_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;ENST00000588652.5_1_19:45854889-45860860:-|nuORF;ENST00000391942.6_1_19:45854889-45865127:-|nuORF	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2588195800781	2	465.256174	928.497795	0.44945	0.00020911	0.48621	0.00022621	0.93566	0.00043532	465.2561510582147	21.367	0.2888	21.438	21.303	21.591	0.071487					6	5	2	0	0	0	0.027866	1	596	596		30.504	14.497	1	9531.3			9952	2613	6721	6735	11528	11528					0.03068596892092046
EDIDVCRAR	9	Unmodified	_EDIDVCRAR_					0	0	0			REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	REV__nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.3049926757812	2	538.761297	1075.50804	-0.049659	-2.6754E-05	4.0344	0.0021736	3.9847	0.0021468	539.2631618076259	85.868	0.25609	85.672	85.552	85.808	-0.19508					6	5	2	0	0	0	0.024447	1	10390	10390		25.574	3.6142	1	27559	+		9953	26222	6722	6736	11529	11529					-0.026691634449889534
EDIFEHNTT	9	Unmodified	_EDIFEHNTT_					0	0	0			REV__nc|ENSG00000171385|Q9UK17-2|KCND3	REV__nc|ENSG00000171385|Q9UK17-2|KCND3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.782470703125	2	553.24346	1104.47237	-0.34461	-0.00019065	4.0819	0.0022583	3.7373	0.0020676	553.245638225369	82.263	2.1956	82.263	80.899	83.095	0					76	52	3	0	0	0	0.024427	1	10361	10361		34.173	0	1	174400	+		9954	36930	6723	6737	11530	11530					-0.07568922421000934
EDIFPILVV	9	Unmodified	_EDIFPILVV_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3240966796875	2	522.802426	1043.5903	-0.14264	-7.4574E-05	-0.061646	-3.2229E-05	-0.20429	-0.0001068	522.8009012489402	71.875	0.45009	71.875	71.566	72.017	0					24	11	3	0	0	0	0.024354	1	8751	8751		38.806	8.3025	1	198390	+		9955	22109	6724	6738	11531	11531					0.07024681905613761
EDIFTLWR	8	Unmodified	_EDIFTLWR_					0	0	0		nc|ENSG00000183889|E9PKD4-2|NPIPA5;nc|ENSG00000254852|F8WFD2|NPIPA3;ENSG00000183793|ENST00000360151|NPIPA5;ENSG00000183426|ENST00000328085|NPIPA1;ENSG00000254852|ENST00000529166|NPIPA2;ENSG00000233024|ENST00000427999|NPIPA9;ENSG00000224712|ENST00000531598|NPIPA3;ENSG00000214967|ENST00000530217|NPIPA7;ENSG00000214940|ENST00000525596|NPIPA8;ENSG00000183889|ENST00000381497|NPIPA9	nc|ENSG00000183889|E9PKD4-2|NPIPA5	nc|ENSG00000183889|E9PKD4-2|NPIPA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.3090209960938	2	540.279649	1078.54475	-0.6619	-0.00035761	3.8933	0.0021035	3.2314	0.0017459	540.7831777380126	63.49	2.4039	63.239	62.48	64.884	-0.25141					116	63	4	0	0	0	0.027866	1	7585	7585		40.573	8.6178	1	984470			9956	9228	6725	6739	11532	11532					0.00861456443226416
EDIGESLLT	9	Unmodified	_EDIGESLLT_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.298095703125	2	488.745305	975.476056	-0.57108	-0.00027911	3.5618	0.0017408	2.9907	0.0014617	488.7469052254474	26.317	0.91316	26.398	26.01	26.923	0.081293					38	21	2	0	0	0	0.024495	1	1352	1352		19.997	0	1	235120	+		9957	24305	6726	6740	11533	11533					-0.012662526471217461
EDIGKILTI	9	Unmodified	_EDIGKILTI_					0	0	0			REV__ENSG00000152642|ENST00000282541|GPD1L	REV__ENSG00000152642|ENST00000282541|GPD1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.3214111328125	2	501.297507	1000.58046	0.38417	0.00019258	2.5976	0.0013022	2.9817	0.0014947	501.2990542016112	63.53	0.39884	63.53	63.196	63.595	0					14	10	2	0	0	0	0.019436	1	7398	7398		118.74	10.656	1	192440	+		9958	24856	6727	6741	11534	11534					0.08019493900224006
EDIGLNNNI	9	Unmodified	_EDIGLNNNI_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7785339355469	2	501.248546	1000.48254	-0.23112	-0.00011585	0.64329	0.00032245	0.41217	0.0002066	501.2489051522877	69.879	0.24251	69.891	69.709	69.952	0.012421					8	5	2	0	0	0	0.024418	1	8325	8325		23.523	0	1	94314	+		9959	28494	6728	6742	11535	11535					-0.017683146957665485
EDIHNLQLR	9	Unmodified	_EDIHNLQLR_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2671508789062	2	569.304187	1136.59382	0.65548	0.00037317	-3.2984	-0.0018778	-2.643	-0.0015046	569.3019075807954	19.083	0.34531	18.88	18.708	19.053	-0.20371					12	6	2	0	0	0	0.024539	1	360	360		20.947	0	1	44631			9960	3658	6729	6743	11536	11536					0.030987447321649597
EDIHVVTGAL	10	Unmodified	_EDIHVVTGAL_					0	0	0		ENST00000549436.5_1_2:144276854-144461094:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15	ENST00000549436.5_1_2:144276854-144461094:+|nuORF	ENST00000549436.5_1_2:144276854-144461094:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.737548828125	2	527.282389	1052.55022	0.0041876	2.2081E-06	-0.10948	-5.7729E-05	-0.1053	-5.5521E-05	527.282308026501	52.823	0.16167	52.633	52.551	52.712	-0.18982					5	3	2	0	0	0	0.03519	1	5505	5505		21.96	11.695	1	24825			9961	1573	6730	6744	11537	11537					0.026051352350577872
EDIIRLVNL	9	Unmodified	_EDIIRLVNL_					0	0	0			REV__ENST00000508840.1_1_8:30095113-30095479:+|nuORF	REV__ENST00000508840.1_1_8:30095113-30095479:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8233032226562	2	542.821681	1083.62881	0.10581	5.7437E-05	3.2796	0.0017802	3.3854	0.0018377	542.8234352971284	101.74	1.4688	101.61	101.31	102.78	-0.13156					94	34	4	0	0	0	0.51687	1	12659	12659		58.23	1.5089	1	4002000	+		9962	34074	6731	6745	11538	11538					0.09033987540146882
EDIITVLKT	9	Unmodified	_EDIITVLKT_					0	0	0		nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2745361328125	2	516.30279	1030.59103	-1.027	-0.00053024	1.59	0.00082093	0.56302	0.00029069	516.303261716268	44.896	0.72514	44.747	44.39	45.115	-0.1488					36	20	2	0	0	0	0.024374	1	4354	4354		19.104	0	1	1440800			9963	18411	6732	6746	11539	11539					0.07695476554658853
EDIKTGLEL	9	Unmodified	_EDIKTGLEL_					0	0	0		ENST00000296161.8_1_3:122292171-122292468:+|nuORF	ENST00000296161.8_1_3:122292171-122292468:+|nuORF	ENST00000296161.8_1_3:122292171-122292468:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.2762145996094	2	509.276772	1016.53899	0.77308	0.00039371	-0.40754	-0.00020755	0.36554	0.00018616	509.27644648225936	71.268	1.0549	70.979	70.633	71.688	-0.28858					66	26	4	0	0	0	0.39228	1	8602	8602		66.429	0.53182	1	6629900			9964	11837	6733	6747	11540	11540					0.031383131409029374
EDILKLFAL	9	Unmodified	_EDILKLFAL_					0	0	0			REV__MYO9B-ABHD8|1|fusion	REV__MYO9B-ABHD8|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.294921875	2	531.3157	1060.61685	0.067208	3.5709E-05	-0.705	-0.00037458	-0.63779	-0.00033887	531.3151934782784	100.99	0.7679	100.98	100.72	101.49	-0.0054474					30	17	2	0	0	0	0.024021	1	12865	12865		68.787	4.5796	1	205610	+		9965	36414	6734	6748	11541	11541					0.0889637079694694
EDILSSKLN	9	Unmodified	_EDILSSKLN_					0	0	0		nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENSG00000006459|ENST00000397560|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7707824707031	2	509.774396	1017.53424	-0.34237	-0.00017453	4.0338	0.0020563	3.6915	0.0018818	509.7764418118136	83.622	1.4117	83.532	82.958	84.369	-0.090454					53	32	3	0	0	0	0.020546	1	10522	10522		84.916	0	1	299730			9966	792	6735	6749	11542	11542					0.02617428998144078
EDILSSKLN	9	Unmodified	_EDILSSKLN_					0	0	0		nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENSG00000006459|ENST00000397560|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.77105712890625	2	509.774396	1017.53424	-0.92646	-0.00047229	4.3312	0.0022079	3.4047	0.0017356	509.7765824934542	83.519	1.3743	83.546	82.96	84.334	0.026558					46	31	3	0	0	0	0.022587	1	10456	10456		108.09	3.3409	1	285670			9967	792	6735	6749	11543	11543					0.02617428998144078
EDILVKPKA	9	Unmodified	_EDILVKPKA_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7643127441406	2	506.8055	1011.59645	0.08476	4.2957E-05	-0.57031	-0.00028903	-0.48555	-0.00024608	506.8049667953505	49.611	0.63832	49.506	49.182	49.82	-0.10558					23	16	2	0	0	0	0.024541	1	4957	4957		16.473	0	1	326130			9968	1387	6736	6750	11544	11544					0.09111200137135711
EDILVVAQSV	10	Unmodified	_EDILVVAQSV_					0	0	0		ENSG00000167291|ENST00000310924|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7688598632812	2	536.797872	1071.58119	-0.33776	-0.00018131	4.1187	0.0022109	3.781	0.0020296	536.7975273049244	87.189	0.37547	87.01	86.862	87.238	-0.17874					11	8	2	0	0	0	0.03519	1	10583	10583		17.468	0	1	21393			9969	7668	6737	6751	11545	11545					0.0482628854927043
EDIQRRLD	8	Unmodified	_EDIQRRLD_					0	0	0			REV__nc|ENSG00000198586|Q9UKI8-4|TLK1;REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.79736328125	2	522.775262	1043.53597	-0.87819	-0.0004591	3.328	0.0017398	2.4498	0.0012807	522.7790538417572	56.706	0.58481	56.706	56.351	56.936	0					35	16	3	0	0	0	0.027866	1	6315	6315		35.618	10.044	1	386220	+		9970	36760;28436	6738	6752	11546	11546					0.015944828067631533
EDISFFFL	8	Unmodified	_EDISFFFL_					0	0	0		ENST00000235382.6_1_1:192780747-192780804:+|nuORF	ENST00000235382.6_1_1:192780747-192780804:+|nuORF	ENST00000235382.6_1_1:192780747-192780804:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7666320800781	2	509.250026	1016.4855	-1.0775	-0.00054871	0.15101	7.69E-05	-0.92647	-0.00047181	509.250047359112	22.508	0.28674	22.582	22.413	22.7	0.073954					11	5	3	0	0	0	0.027866	1	766	766		65.897	11.133	1	11354			9971	11255	6739	6753	11547	11547					-0.022084395709498494
EDISVEQAKG	10	Unmodified	_EDISVEQAKG_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2894287109375	2	538.266936	1074.51932	1.0285	0.00055361	-2.4991	-0.0013452	-1.4706	-0.00079159	538.7671092054572	82.439	0.38724	82.329	82.252	82.639	-0.11006					19	8	3	0	0	0	0.03519	1	10249	10249		19.997	6.2214	1	111580	+		9972	23577	6740	6754	11548	11548					-0.01496062869864545
EDITILNIY	9	Unmodified	_EDITILNIY_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.7847290039062	2	547.292422	1092.57029	0.31435	0.00017204	0.54674	0.00029923	0.86109	0.00047127	547.2923178671043	83.317	1.013	83.148	82.69	83.703	-0.16915					49	23	4	0	0	0	0.024263	1	10135	10135		42.396	21.449	1	384570			9973	17903	6741	6755	11549	11549					0.0277088617501704
EDITILNIY	9	Unmodified	_EDITILNIY_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.292422	1092.57029	-1.0667	-0.00058382	0.6532	0.00035749	-0.41355	-0.00022633	547.2929342434376	83.232	1.1187	83.232	82.878	83.997	0	0.05273	-9.5635E-05	NaN	42.396	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579450			9974	17903	6741	6755							0.0277088617501704
EDITILNIY	9	Unmodified	_EDITILNIY_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.292422	1092.57029	-0.28492	-0.00015594	0.058916	3.2244E-05	-0.22601	-0.00012369	547.2925766149447	83.287	1.0284	83.197	82.915	83.943	-0.090454	0.018058	-0.00074612	NaN	42.396	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622880			9975	17903	6741	6755							0.0277088617501704
EDITILNIY	9	Unmodified	_EDITILNIY_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|96|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	547.292422	1092.57029	-1.4119	-0.0007727	1.2924	0.0007073	-0.11949	-6.5397E-05	547.2931647110036	83.224	1.2006	83.25	82.788	83.988	0.02655	0.071494	0.00060398	NaN	42.396	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578850			9976	17903	6741	6755							0.0277088617501704
EDIVLRVI	8	Unmodified	_EDIVLRVI_					0	0	0			REV__nc|ENSG00000137941|Q6ZT98-3|TTLL7	REV__nc|ENSG00000137941|Q6ZT98-3|TTLL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28460693359375	2	478.792392	955.570232	-0.016537	-7.9179E-06	-0.013027	-6.2373E-06	-0.029564	-1.4155E-05	478.7922942330343	78.863	0.54024	78.881	78.651	79.192	0.018677					17	12	2	0	0	0	0.027866	1	9714	9714		24.203	0	1	386000	+		9977	23796	6742	6756	11550	11550					0.09066930965661868
EDIVSKNDL	9	Unmodified	_EDIVSKNDL_					0	0	0			REV__ENSG00000204671|ENST00000377035|IL31	REV__ENSG00000204671|ENST00000377035|IL31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2757568359375	2	516.764029	1031.5135	0.57141	0.00029529	0.41693	0.00021546	0.98835	0.00051074	517.265360616272	88.865	0.38126	88.843	88.652	89.033	-0.021645					11	8	2	0	0	0	0.024495	1	11173	11173		26.693	0	1	45184	+		9978	28630	6743	6757	11551	11551					-0.0009916138151311316
EDKDLNGPSV	10	Unmodified	_EDKDLNGPSV_					0	0	0			REV__ENSG00000080298|ENST00000617270|RFX3	REV__ENSG00000080298|ENST00000617270|RFX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7688598632812	2	537.259111	1072.50367	-0.3433	-0.00018444	0.28017	0.00015052	-0.063135	-3.392E-05	537.2595516074593	87.27	0.41597	87.091	86.822	87.238	-0.17875					15	9	2	0	0	0	0.03519	1	10583	10583		24.519	0	1	128760	+		9979	20652	6744	6758	11552	11552					-0.02968349386924274
EDKEEQTPA	9	Unmodified	_EDKEEQTPA_					0	0	0			REV__nc|ENSG00000105443|Q99418|CYTH2	REV__nc|ENSG00000105443|Q99418|CYTH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3194580078125	2	523.735468	1045.45638	-1.4758	-0.00077291	3.4674	0.001816	1.9916	0.0010431	523.7367326865485	64.919	0.34118	64.657	64.455	64.796	-0.2626					10	8	2	0	0	0	0.024427	1	7611	7611		34.173	1.3601	1	77363	+		9980	36542	6745	6759	11553	11553					-0.06452628657893911
EDKEKVSEL	9	Unmodified	_EDKEKVSEL_					0	0	0		nc|ENSG00000131037|Q8TE68-3|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;ENST00000587715.1_1_19:55598611-55598979:+|nuORF	nc|ENSG00000131037|Q8TE68-3|EPS8L1	nc|ENSG00000131037|Q8TE68-3|EPS8L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2962646484375	2	538.777136	1075.53972	-0.2492	-0.00013427	-4.2456	-0.0022874	-4.4948	-0.0024217	539.275829934527	87.152	0.7142	87.152	86.899	87.613	0					29	16	2	0	0	0	0.022657	1	11026	11026		98.629	36.522	1	617170			9981	4487	6746	6760	11554	11554					0.004971077899426746
EDKEVHSEI	9	Unmodified	_EDKEVHSEI_					0	0	0		FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3202514648438	2	543.259111	1084.50367	-0.62739	-0.00034084	-3.3774	-0.0018348	-4.0048	-0.0021756	544.2596833505336	64.475	0.19077	64.52	64.372	64.563	0.045502					9	4	3	0	0	0	0.016258	1	7512	7512		116.9	15.303	1	51787			9982	1762;17640;17642;17639;17641	6747	6761	11555	11555					-0.0352034938689485
EDKHRVVIQR	10	Unmodified	_EDKHRVVIQR_					0	0	0		nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2651672363281	3	427.245832	1278.71567	0.41674	0.00017805	2.0297	0.00086719	2.4465	0.0010452	427.2466140386189	53.943	0.30527	54.041	53.808	54.114	0.098011					18	8	3	0	0	0	0.03519	1	5782	5782		12.207	4.1723	1	327690			9983	18650	6748	6762	11556	11556					0.08745786814552048
EDKILAVFY	9	Unmodified	_EDKILAVFY_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2;ENSG00000196071|ENST00000358120|OR2L13	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2615966796875	2	549.297507	1096.58046	-0.16414	-9.0164E-05	-0.42642	-0.00023423	-0.59057	-0.0003244	549.296927722508	91.076	0.74876	91.087	90.825	91.574	0.011276					35	17	3	0	0	0	0.024436	1	11483	11483		30.504	21.321	1	360400			9984	10271	6749	6763	11557	11557					0.03603493900232024
EDKKNKRVT	9	Unmodified	_EDKKNKRVT_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	559.3216552734375	2	559.319837	1116.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.829	1	67.541	67.041	68.041	-0.28834								0	0	0	0.55222	1	8075	8075		45.972	3.5761	1		+		9985	23180	6750	6764	11558	11558					0.07147317766271044
EDKLHECFRQ	10	Unmodified	_EDKLHECFRQ_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.74786376953125	3	435.539916	1303.59792	0.10786	4.6978E-05	-4.4049	-0.0019185	-4.297	-0.0018715	435.53789259584005	32.719	0.68161	32.558	32.241	32.923	-0.16107					41	16	4	0	0	0	0.03519	1	2286	2286		10.587	0	1	364990	+		9986	26730	6751	6765	11559	11559					-0.0417353383641057
EDKLKQIDEL	10	Unmodified	_EDKLKQIDEL_					0	0	0			REV__ENSG00000100055|ENST00000248901|CYTH4	REV__ENSG00000100055|ENST00000248901|CYTH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.8913879394531	3	410.890721	1229.65033	-0.32863	-0.00013503	-4.066	-0.0016707	-4.3946	-0.0018057	410.88910017527655	28.125	1.4399	27.973	27.729	29.169	-0.15195					95	34	4	0	0	0	0.03519	1	1637	1637		29.551	10.288	1	2694400	+		9987	21040	6752	6766	11560	11560					0.044693277782016594
EDKLQALFL	9	Unmodified	_EDKLQALFL_					0	0	0			REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;REV__nc|ENSG00000137713|P30154-3|PPP2R1B	REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8026733398438	2	538.802957	1075.59136	-1.1978	-0.00064539	0.45553	0.00024544	-0.74228	-0.00039994	538.8031436333358	93.829	2.7283	93.834	93.391	96.119	0.0059814					181	64	5	0	0	0	0.4752	1	11954	11954		60.972	4.2509	1	13029000	+		9988	21539;36703	6753	6767	11561	11561					0.05658896274508152
EDKLQNEDL	9	Unmodified	_EDKLQNEDL_					0	0	0			REV__ENSG00000146476|ENST00000367294|ARMT1	REV__ENSG00000146476|ENST00000367294|ARMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7989501953125	2	552.264393	1102.51423	0.17615	9.7279E-05	-2.3917	-0.0013209	-2.2156	-0.0012236	552.2631528100243	58.226	0.76882	58.226	57.982	58.75	0					28	20	2	0	0	0	0.024466	1	6551	6551		18.262	0.89712	1	193860	+		9989	24496	6754	6768	11562	11562					-0.032923667324666894
EDKMRILKET	10	Unmodified	_EDKMRILKET_					0	0	0			REV__ENST00000470814.1_1_22:19709577-19710004:+|nuORF	REV__ENST00000470814.1_1_22:19709577-19710004:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.84686279296875	3	421.56395	1261.67002	-0.37943	-0.00015996	-3.5019	-0.0014763	-3.8813	-0.0016362	421.8967633818133	33.092	0.19877	32.927	32.839	33.038	-0.16565					6	4	2	0	0	0	0.03519	1	2313	2313		10.104	0	1	29715	+		9990	33162	6755	6769	11563	11563					0.04965380517273843
EDKPSAPIKP	10	Unmodified	_EDKPSAPIKP_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.7840576171875	2	541.298039	1080.58152	-0.61826	-0.00033467	-0.2465	-0.00013343	-0.86476	-0.00046809	541.2974696552467	67.427	0.40123	67.451	67.152	67.554	0.023911					15	9	2	0	0	0	0.03519	1	7951	7951		65.465	16.024	1	343500			9991	5385	6756	6770	11564	11564					0.04445708269122406
EDKRLLLV	8	Unmodified	_EDKRLLLV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3058776855469	2	493.305667	984.596781	0.2699	0.00013314	-0.74403	-0.00036703	-0.47412	-0.00023389	493.30526676310683	59.031	0.87862	59.116	58.813	59.692	0.085686					71	23	4	0	0	0	0.81662	1	6633	6633		57.811	3.035	1	8727300			9992	371	6757	6771	11565	11565					0.10386619857013102
EDKSLNVRA	9	Unmodified	_EDKSLNVRA_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2735595703125	2	516.277638	1030.54072	-0.5593	-0.00028875	-0.01467	-7.5738E-06	-0.57397	-0.00029633	516.278178053774	45.39	0.33424	45.241	45.115	45.449	-0.1488					12	9	2	0	0	0	0.024466	1	4387	4387		39.253	5.0803	1	379340			9993	1376	6758	6772	11566	11566					0.026673669495039576
EDKVIHLIP	9	Unmodified	_EDKVIHLIP_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8031616210938	2	532.310949	1062.60735	-0.5687	-0.00030272	-2.4858	-0.0013232	-3.0545	-0.0016259	532.3097129576473	79.029	1.039	78.857	78.236	79.275	-0.17226					61	24	3	0	0	0	0.024541	1	9817	9817		23.042	3.6825	1	188160	+		9994	23907	6759	6773	11567	11567					0.0785460251142922
EDLAGSAHAKI	11	Unmodified	_EDLAGSAHAKI_					0	0	0			REV__nc|ENSG00000074047|P10070-4|GLI2	REV__nc|ENSG00000074047|P10070-4|GLI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2897338867188	2	556.290745	1110.56694	0.0623	3.4657E-05	-1.3959	-0.00077653	-1.3336	-0.00074187	556.2886302934431	67.309	3.4678	67.309	66.487	69.954	0					206	88	5	0	0	0	0.43676	2	8041	8041;8051		80.455	2.1591	1	3137100	+		9995	20517	6760	6774	11568;11569	11568					0.01607636120979805
EDLAGSAHAKI	11	Unmodified	_EDLAGSAHAKI_					0	0	0			REV__nc|ENSG00000074047|P10070-4|GLI2	REV__nc|ENSG00000074047|P10070-4|GLI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2886352539062	2	556.290745	1110.56694	-0.05395	-3.0012E-05	-3.0429	-0.0016928	-3.0969	-0.0017228	556.2889888004471	65.231	1.5317	65.268	64.634	66.166	0.037384					123	41	4	0	0	0	0.70358	1	7620	7620		63.534	2.5619	1	13338000	+		9996	20517	6760	6774	11570	11570					0.01607636120979805
EDLAGSAHAKI	11	Unmodified	_EDLAGSAHAKI_					0	0	0			REV__nc|ENSG00000074047|P10070-4|GLI2	REV__nc|ENSG00000074047|P10070-4|GLI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.289306640625	2	556.290745	1110.56694	0.28298	0.00015742	-1.7192	-0.00095636	-1.4362	-0.00079894	556.2885791820868	67.439	3.4468	67.462	66.517	69.963	0.023903					212	87	5	0	0	0	0.73399	1	7969	7969		61.691	2.9093	1	2760900	+		9997	20517	6760	6774	11571	11571					0.01607636120979805
EDLALDFSL	9	Unmodified	_EDLALDFSL_					0	0	0		ENSG00000142609|ENST00000682832|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENST00000412120.2_1_1:1853728-1858343:-|nuORF;ENST00000464311.5_1_1:1853728-1858229:-|nuORF	ENSG00000142609|ENST00000682832|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.80322265625	2	511.755672	1021.49679	-0.309	-0.00015813	0.32607	0.00016687	0.017077	8.7395E-06	511.75550715999447	52.421	0.46895	52.513	52.28	52.749	0.091938					18	11	2	0	0	0	0.024457	1	5524	5524		21.96	5.4867	1	112070			9998	5574	6761	6775	11572	11572					-0.013096622674879654
EDLALDFSL	9	Unmodified	_EDLALDFSL_					0	0	0		ENSG00000142609|ENST00000682832|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENST00000412120.2_1_1:1853728-1858343:-|nuORF;ENST00000464311.5_1_1:1853728-1858229:-|nuORF	ENSG00000142609|ENST00000682832|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.755672	1021.49679	-0.4372	-0.00022374	-0.87584	-0.00044821	-1.313	-0.00067195	511.75501327489485	52.553	0.31711	52.426	52.234	52.552	-0.12705	-0.048272	-0.00061571	NaN	20.947	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127580			9999	5574	6761	6775							-0.013096622674879654
EDLATQHHF	9	Unmodified	_EDLATQHHF_					0	0	0			REV__ENSG00000213199|ENST00000349064|ASIC3	REV__ENSG00000213199|ENST00000349064|ASIC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2639770507812	2	549.254163	1096.49377	-0.085359	-4.6884E-05	1.2117	0.00066554	1.1264	0.00061866	549.2536993044635	46.184	0.1531	46.088	45.999	46.152	-0.096653					5	3	2	0	0	0	0.024487	1	4428	4428		31.955	0	1	64677	+		10000	28732	6762	6776	11573	11573					-0.05061492601635109
EDLDKYALV	9	Unmodified	_EDLDKYALV_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7864990234375	2	533.276772	1064.53899	-0.65129	-0.00034732	3.2386	0.0017271	2.5873	0.0013798	533.2778241662471	78.315	0.86933	78.331	78.031	78.9	0.015907					29	20	2	0	0	0	0.024209	1	9572	9572		56.721	7.2795	1	366770	+		10001	24258	6763	6777	11574	11574					0.009303131408842091
EDLDLTLYL	9	Unmodified	_EDLDLTLYL_					0	0	0		nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000253485|ENST00000518069|PCDHGA5	nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2700805664062	2	547.78443	1093.55431	-0.69835	-0.00038254	0.90796	0.00049736	0.20961	0.00011482	547.784748589293	39.157	0.53802	38.934	38.686	39.225	-0.22311					26	14	2	0	0	0	0.024457	1	3247	3247		37.159	0	1	338370			10002	10863	6764	6778	11575	11575					0.011271799380892844
EDLDNLWR	8	Unmodified	_EDLDNLWR_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7597045898438	2	530.756538	1059.49852	0.84317	0.00044752	2.9919	0.0015879	3.835	0.0020355	530.7579552194014	96.843	1.1537	96.843	96.528	97.682	-3.0518E-05					59	25	3	0	0	0	0.73796	1	12266	12266		64.207	2.0999	1	616190	+		10003	19683	6765	6779	11576	11576					-0.028846084588849408
EDLEDVALD	9	Unmodified	_EDLEDVALD_					0	0	0		nc|ENSG00000166839|Q495B1-2|ANKDD1A;nc|ENSG00000166839|Q495B1-1|ANKDD1A;ENSG00000166839|ENST00000319580|ANKDD1A	nc|ENSG00000166839|Q495B1-2|ANKDD1A	nc|ENSG00000166839|Q495B1-2|ANKDD1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2841796875	2	509.732394	1017.45024	-0.052733	-2.688E-05	-2.4131	-0.00123	-2.4658	-0.0012569	509.73103763047686	69.598	1.3613	69.347	68.782	70.143	-0.25063					50	32	2	0	0	0	0.024294	1	8139	8139		37.159	0	1	135860			10004	7613	6766	6780	11577	11577					-0.05779146889426556
EDLEEDLIV	9	Unmodified	_EDLEEDLIV_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.3038330078125	2	537.763694	1073.51284	-0.69488	-0.00037368	-2.5075	-0.0013485	-3.2024	-0.0017221	537.7621178920112	85.706	0.7124	85.649	85.481	86.194	-0.057617					25	16	2	0	0	0	0.023817	1	10783	10783		71.296	0	1	202660			10005	1745	6767	6781	11578	11578					-0.020980008212291068
EDLEEPRAI	9	Unmodified	_EDLEEPRAI_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3291625976562	2	536.269478	1070.5244	0.18182	9.7502E-05	1.7816	0.00095544	1.9634	0.0010529	536.2702272504202	19.166	0.34644	19.005	18.787	19.134	-0.16079					11	6	3	0	0	0	0.022657	1	370	370		98.629	0.047388	1	116280			10006	1413	6768	6782	11579	11579					-0.008037590072262901
EDLEIIFSR	9	Unmodified	_EDLEIIFSR_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.321044921875	2	561.295496	1120.57644	0.2288	0.00012843	0.39959	0.00022429	0.62839	0.00035271	561.2961945971889	72.496	0.97279	72.231	71.921	72.894	-0.26479					67	22	5	0	0	0	0.024427	1	8556	8556		34.173	0	1	2254100			10007	4483	6769	6783	11580	11580					0.02097404406526948
EDLEIKSVL	9	Unmodified	_EDLEIKSVL_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35;ENST00000445063.5_1_2:20113365-20153734:-|nuORF	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.296875	2	523.292422	1044.57029	0.66941	0.0003503	2.8782	0.0015061	3.5476	0.0018564	523.2937129938047	51.733	1.1744	51.549	51.14	52.314	-0.18404					85	30	4	0	0	0	0.16468	1	5346	5346		96.19	8.4361	1	7021700			10008	18207	6770	6784	11581	11581					0.04978886175013031
EDLFFYSE	8	Unmodified	_EDLFFYSE_					0	0	0		nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2960815429688	2	525.226748	1048.43894	0.19907	0.00010456	-3.3396	-0.0017541	-3.1406	-0.0016495	525.2247749965038	81.327	0.45283	81.134	80.966	81.419	-0.19334					18	10	2	0	0	0	0.027866	1	9762	9762		31.955	2.8053	1	105460			10009	18502	6771	6785	11582	11582					-0.08333924192902487
EDLFNHESD	9	Unmodified	_EDLFNHESD_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.786376953125	2	553.225268	1104.43598	-0.49165	-0.00027199	0.72581	0.00040153	0.23416	0.00012954	553.2255802023805	56.398	0.66979	56.241	55.783	56.453	-0.15655					22	16	2	0	0	0	0.024541	1	6055	6055		14.137	0	1	72663	+		10010	27947	6772	6786	11583	11583					-0.11205799317690435
EDLGELPDL	9	Unmodified	_EDLGELPDL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2794494628906	2	500.745305	999.476056	-1.2307	-0.00061625	-4.4481	-0.0022274	-5.6788	-0.0028436	500.74280081705484	90.772	0.50064	90.772	90.469	90.97	0					33	11	4	0	0	0	0.024427	1	11465	11465		26.693	5.746	1	594700	+		10011	20533	6773	6787	11584	11584					-0.023702526471197416
EDLGKLQPL	9	Unmodified	_EDLGKLQPL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.G204Vfs*2|1|0.17|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.L329Efs*22|1|0.16|ENSG00000120071|chr17:46171158-46171159|AA/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.78662109375	2	506.787307	1011.56006	0.43629	0.0002211	-0.36409	-0.00018452	0.072196	3.6588E-05	506.78705102733085	71.114	1.0126	71.114	70.744	71.756	0					46	25	3	0	0	0	0.024418	1	8708	8708		30.318	0	1	1176500			10012	3792	6774	6788	11585	11585					0.05474323240423473
EDLGKLVQ	8	Unmodified	_EDLGKLVQ_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2638244628906	2	451.2531	900.491647	-0.83689	-0.00037765	1.0114	0.00045642	0.17455	7.8768E-05	451.25362080314267	61.812	0.84646	61.634	61.036	61.883	-0.17781					23	20	2	0	0	0	0.027866	1	6875	6875		3.6843	0	1	77363			10013	8905	6775	6789	11586	11586					0.037420786605594
EDLHITQELVW	11	Unmodified	_EDLHITQELVW_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.2746887207031	3	461.56987	1381.68778	0.25948	0.00011977	0.37464	0.00017292	0.63411	0.00029269	461.56985154255784	21.189	0.19489	21.012	20.87	21.065	-0.17721					5	3	2	0	0	0	0.024792	1	624	624		18.531	0	1	8986.5	+		10014	26717	6776	6790	11587	11587					0.012204190437842044
EDLHNVLI	8	Unmodified	_EDLHNVLI_					0	0	0			REV__ENSG00000121207|ENST00000336356|LRAT	REV__ENSG00000121207|ENST00000336356|LRAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.75885009765625	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	0.94517	1	13197	13197		45.952	5.3793	1	5421500	+		10015	22584	6777	6791	11588	11588					0.024854810348642786
EDLIEARRP	9	Unmodified	_EDLIEARRP_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.3222045898438	2	549.798737	1097.58292	-0.49029	-0.00026956	3.5598	0.0019572	3.0695	0.0016876	549.8001803923996	63.39	0.79774	63.138	62.683	63.48	-0.25141					35	20	3	0	0	0	0.024344	1	7365	7365		54.776	0	1	532840	+		10016	21909	6778	6792	11589	11589					0.03803342357878137
EDLIEVGKA	9	Unmodified	_EDLIEVGKA_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2829284667969	2	487.263665	972.512776	-0.4733	-0.00023062	0.76929	0.00037485	0.29599	0.00014423	487.26278240215373	81.551	0.53239	81.551	81.258	81.791	0					32	12	4	0	0	0	0.024397	1	10120	10120		31.53	0	1	184010	+		10017	24228	6779	6793	11590	11590					0.025420439694244124
EDLKARCLK	9	Unmodified	_EDLKARCLK_					0	0	0		ENST00000474131.5_1_10:75577276-75601951:-|nuORF	ENST00000474131.5_1_10:75577276-75601951:-|nuORF	ENST00000474131.5_1_10:75577276-75601951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.8018188476562	2	538.300059	1074.58556	-0.69694	-0.00037516	1.7439	0.00093874	1.047	0.00056358	538.2990579407476	88.259	0.53364	88.122	87.823	88.357	-0.13744					21	12	3	0	0	0	0.024374	1	10708	10708		40.778	0	1	152740			10018	15023	6780	6794	11591	11591					0.051254744912057504
EDLKDLGEI	9	Unmodified	_EDLKDLGEI_					0	0	0		ENST00000602537.5_1_17:11984679-12043167:+|nuORF;MAP2K4|p.S233*|1|0.21|ENSG00000065559|chr17:12113245-12113258|CCAATATTCTTCTG/-|frameshift_variant;ENSG00000065559|ENST00000353533|MAP2K4;nc|ENSG00000065559|P45985-2|MAP2K4	ENST00000602537.5_1_17:11984679-12043167:+|nuORF	ENST00000602537.5_1_17:11984679-12043167:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2674560546875	2	516.266404	1030.51826	-0.80704	-0.00041665	1.4589	0.00075316	0.65181	0.00033651	516.2671056406949	31.1	1.9277	31.169	30.04	31.967	0.068962					153	46	5	0	0	0	0.31037	1	2003	2003		74.255	5.4682	1	6164700			10019	1310	6781	6795	11592	11592					0.004217227612343777
EDLKILML	8	Unmodified	_EDLKILML_					0	0	0			REV__nc|ENSG00000167749|Q9Y5K2|KLK4	REV__nc|ENSG00000167749|Q9Y5K2|KLK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.77935791015625	2	487.783179	973.551804	-0.50377	-0.00024573	-3.5688	-0.0017408	-4.0726	-0.0019865	487.7812702047306	75.716	2.3612	75.444	74.441	76.802	-0.27266					129	57	4	0	0	0	0.30538	1	8961	8961		110.34	24.978	1	3428300	+		10020	26191	6782	6796	11593	11593					0.06397052999443531
EDLKILML	8	Unmodified	_EDLKILML_					0	0	0			REV__nc|ENSG00000167749|Q9Y5K2|KLK4	REV__nc|ENSG00000167749|Q9Y5K2|KLK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.78033447265625	2	487.783179	973.551804	-0.17253	-8.4159E-05	-3.8518	-0.0018788	-4.0243	-0.001963	487.7811759612547	75.672	2.1121	75.414	74.408	76.521	-0.25866					112	51	3	0	0	0	0.30538	2	8959	8959;8972		110.34	24.978	1	3129600	+		10021	26191	6782	6796	11594;11595	11594					0.06397052999443531
EDLKPQDLCLC	11	Unmodified	_EDLKPQDLCLC_					0	0	0			REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF	REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.235107421875	3	426.201913	1275.58391	-0.17825	-7.597E-05	-2.2713	-0.00096803	-2.4495	-0.001044	426.20122966115065	27.891	0.68742	27.972	27.684	28.371	0.081291					35	16	3	0	0	0	0.024782	1	1541	1541		25.126	8.4086	1	143830	+		10022	34184	6783	6797	11596	11596					-0.04285947379707977
EDLLIKLV	8	Unmodified	_EDLLIKLV_					0	0	0			REV__ENSG00000135828|ENST00000367559|RNASEL	REV__ENSG00000135828|ENST00000367559|RNASEL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.797119140625	2	471.797143	941.579734	0.15999	7.5483E-05	0.0015758	7.4345E-07	0.16157	7.6226E-05	471.79703884185085	85.652	0.89514	85.515	85.241	86.136	-0.13753					47	20	3	0	0	0	0.99042	1	10378	10378		38.806	3.1879	1	635180	+		10023	23583	6784	6798	11597	11597					0.10660699251195638
EDLMVINKV	9	Oxidation (M)	_EDLM(Oxidation (M))VINKV_		EDLM(1)VINKV		EDLM(85)VINKV	0	0	1		ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2442626953125	2	538.78645	1075.55835	0.22007	0.00011857	-0.40712	-0.00021935	-0.18705	-0.00010078	538.7861048926491	55.306	0.91319	55.306	55.014	55.927	0					54	25	3	0	0	0	0.023239	1	6164	6164		84.916	7.5979	1	1608600			10024	11832	6785	6799	11598	11598		470			0.023589461601659423
EDLMVINKV	9	Oxidation (M)	_EDLM(Oxidation (M))VINKV_		EDLM(1)VINKV		EDLM(85)VINKV	0	0	1		ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.243408203125	2	538.78645	1075.55835	-0.63436	-0.00034179	0.59981	0.00032317	-0.034551	-1.8616E-05	538.7866557964577	55.38	0.96315	55.227	54.963	55.926	-0.15269					53	26	3	0	0	0	0.023239	1	6139	6139		84.916	9.8722	1	1720600			10025	11832	6785	6799	11599	11599		470			0.023589461601659423
EDLMVINKV	9	Oxidation (M)	_EDLM(Oxidation (M))VINKV_		EDLM(1)VINKV		EDLM(77)VINKV	0	0	1		ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.243408203125	2	538.78645	1075.55835	-1.4454	-0.00077877	1.3983	0.00075338	-0.047125	-2.5391E-05	538.7870765506517	55.057	0.90145	55.155	54.881	55.782	0.098015					54	24	3	0	0	0	0.023007	1	6046	6046		76.774	27.238	1	2092000			10026	11832	6785	6799	11600	11600		470			0.023589461601659423
EDLMVINKV	9	Oxidation (M)	_EDLM(Oxidation (M))VINKV_					0	0	1		ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.78645	1075.55835	-0.49302	-0.00026563	2.1359	0.0011508	1.6429	0.00088515	539.2885355154262	55.503	0.30379	55.272	55.128	55.432	-0.23087	0.049141	0.0016508	NaN	76.774	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206970			10027	11832	6785	6799				470			0.023589461601659423
EDLMVINKV	9	Oxidation (M)	_EDLM(Oxidation (M))VINKV_					0	0	1		ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	ENST00000295900.10_1_3:63987120-63987234:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.78645	1075.55835	-1.2099	-0.00065189	1.8096	0.00097498	0.59966	0.00032309	538.7878706978004	55.4	0.26967	55.184	55.104	55.373	-0.21551	-0.038758	0.0012992	NaN	76.774	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260590			10028	11832	6785	6799				470			0.023589461601659423
EDLPAPLGAP	10	Unmodified	_EDLPAPLGAP_					0	0	0		nc|ENSG00000104892|Q6P597-2|KLC3;ENSG00000104892|ENST00000391946|KLC3;nc|ENSG00000104892|Q6P597-3|KLC3	nc|ENSG00000104892|Q6P597-2|KLC3	nc|ENSG00000104892|Q6P597-2|KLC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27691650390625	2	490.258382	978.502212	0.17577	8.6173E-05	3.9669	0.0019448	4.1427	0.002031	490.2601265767428	64.407	0.73969	64.407	64.133	64.873	0					45	19	3	0	0	0	0.03519	1	7616	7616		65.803	0	1	1011400			10029	2616	6786	6800	11601	11601					0.012100613149868877
EDLPAPLGAP	10	Unmodified	_EDLPAPLGAP_					0	0	0		nc|ENSG00000104892|Q6P597-2|KLC3;ENSG00000104892|ENST00000391946|KLC3;nc|ENSG00000104892|Q6P597-3|KLC3	nc|ENSG00000104892|Q6P597-2|KLC3	nc|ENSG00000104892|Q6P597-2|KLC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2765197753906	2	490.258382	978.502212	-0.065772	-3.2245E-05	4.1633	0.0020411	4.0975	0.0020088	490.2602439888483	64.382	0.74615	64.427	64.153	64.899	0.045502					46	19	3	0	0	0	0.03519	1	7535	7535		63.306	22.528	1	856210			10030	2616	6786	6800	11602	11602					0.012100613149868877
EDLPCGLVLS	10	Unmodified	_EDLPCGLVLS_					0	0	0		ENST00000579482.5_1_17:72858941-72860228:-|nuORF;nc|ENSG00000161513|P22570-4|FDXR;nc|ENSG00000161513|P22570-6|FDXR;nc|ENSG00000161513|P22570-5|FDXR;ENST00000577509.5_1_17:72858941-72868963:-|nuORF;nc|ENSG00000161513|P22570|FDXR;ENSG00000161513|ENST00000293195|FDXR;nc|ENSG00000161513|P22570-2|FDXR;nc|ENSG00000161513|P22570-7|FDXR;nc|ENSG00000161513|P22570-3|FDXR	ENST00000579482.5_1_17:72858941-72860228:-|nuORF	ENST00000579482.5_1_17:72858941-72860228:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7981567382812	2	523.26535	1044.51615	-0.045863	-2.3998E-05	0.20786	0.00010877	0.162	8.4768E-05	523.2634115044199	71.421	0.21738	71.146	71.056	71.273	-0.27509					5	4	2	0	0	0	0.03519	1	8348	8348		25.574	3.6142	1	24755			10031	6876	6787	6801	11603	11603					-0.004330292482109144
EDLPNQFY	8	Unmodified	_EDLPNQFY_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8138427734375	2	513.232364	1024.45018	-2.1279	-0.0010921	-1.4518	-0.00074513	-3.5798	-0.0018373	513.2314180741512	60.322	0.90262	60.401	59.936	60.839	0.078888					40	23	2	0	0	0	0.027866	1	6782	6782		47.916	7.1374	1	239030			10032	6309	6788	6802	11604	11604					-0.06107102098746964
EDLQEQIYLN	10	Unmodified	_EDLQEQIYLN_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5929260253906	3	422.206709	1263.5983	-0.43364	-0.00018308	-0.32882	-0.00013883	-0.76246	-0.00032191	422.20634611137945	50.036	0.34785	50.036	49.768	50.116	0					16	9	2	0	0	0	0.03519	1	5173	5173		13.508	0	1	128820			10033	1550	6789	6803	11605	11605					-0.022958356355502474
EDLQRERI	8	Unmodified	_EDLQRERI_					0	0	0		nc|ENSG00000125388|P32298-3|GRK4;nc|ENSG00000125388|P32298-4|GRK4;nc|ENSG00000125388|P32298-2|GRK4;ENSG00000125388|ENST00000398052|GRK4	nc|ENSG00000125388|P32298-3|GRK4	nc|ENSG00000125388|P32298-3|GRK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7860717773438	2	529.783087	1057.55162	-0.10514	-5.5699E-05	3.3733	0.0017871	3.2682	0.0017314	529.7848174501404	72.426	0.63144	72.161	71.921	72.553	-0.26479					43	14	4	0	0	0	0.34573	1	8516	8516		104.75	5.3716	1	1626400			10034	4101	6790	6804	11606	11606					0.025147693238068314
EDLQRRLE	8	Unmodified	_EDLQRRLE_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3138427734375	2	529.783087	1057.55162	-1.1675	-0.00061853	-3.9804	-0.0021087	-5.1479	-0.0027273	529.780209774765	64.66	0.26189	64.66	64.538	64.8	0					9	6	2	0	0	0	0.027866	1	7617	7617		24.203	0	1	105890			10035	1939	6791	6805	11607	11607					0.025147693238068314
EDLRKFILA	9	Unmodified	_EDLRKFILA_					0	0	0		ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.7659912109375	2	552.824224	1103.63389	-0.89886	-0.00049691	0.47243	0.00026117	-0.42642	-0.00023574	552.8243886391494	61.262	0.53839	61.086	60.833	61.372	-0.1761					23	12	2	0	0	0	0.024477	1	6858	6858		44.117	11.304	1	586670			10036	3211	6792	6806	11608	11608					0.08622291402775772
EDLRNVID	8	Unmodified	_EDLRNVID_					0	0	0		ENSG00000172167|ENST00000305949|MTBP;nc|ENSG00000172167|Q96DY7-3|MTBP;MTBP|p.S235L|1|0.08|ENSG00000172167|chr8:120456627-120456627|C/T|missense_variant	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.77105712890625	2	487.251089	972.487624	-0.43815	-0.00021349	-1.2701	-0.00061884	-1.7082	-0.00083234	487.25033039318356	79.916	0.46204	79.916	79.658	80.12	0					14	10	2	0	0	0	0.027866	1	9899	9899		15.642	0	1	101920			10037	8249	6793	6807	11609	11609					0.0002798916684696451
EDLRYLFGE	9	Unmodified	_EDLRYLFGE_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.7284545898438	2	571.279846	1140.54514	-0.61026	-0.00034863	3.1326	0.0017896	2.5223	0.001441	571.2815321528495	51.522	0.82338	51.245	50.929	51.752	-0.27643					51	21	4	0	0	0	0.024447	1	5339	5339		25.574	0	1	1184500			10038	651	6794	6808	11610	11610					-0.01951168627556399
EDLSLDDLPP	10	Unmodified	_EDLSLDDLPP_					0	0	0			REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.3248901367188	2	557.269144	1112.52373	-0.54733	-0.00030501	1.7109	0.00095342	1.1635	0.00064841	557.7697594603383	76.139	0.22473	75.867	75.699	75.924	-0.27267					6	5	2	0	0	0	0.03519	1	9027	9027		21.96	0	1	67180	+		10039	27865	6795	6809	11611	11611					-0.028025984469422838
EDLSRKVQDL	10	Unmodified	_EDLSRKVQDL_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.9035339355469	3	401.550698	1201.63027	0.27247	0.00010941	1.3852	0.00055623	1.6577	0.00066564	401.55084328998987	30.993	0.54465	30.752	30.41	30.954	-0.24109					26	12	3	0	0	0	0.03519	1	1999	1999		44.639	15.089	1	74608			10040	15010	6796	6810	11612	11612					0.03751576838249093
EDLSWAKTL	9	Unmodified	_EDLSWAKTL_					0	0	0		TTC33|p.R172K|1|0.06|ENSG00000113638|chr5:40716419-40716419|C/T|missense_variant	TTC33|p.R172K|1|0.06|ENSG00000113638|chr5:40716419-40716419|C/T|missense_variant	TTC33|p.R172K|1|0.06|ENSG00000113638|chr5:40716419-40716419|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7733154296875	2	531.776939	1061.53933	-0.90058	-0.00047891	-1.0662	-0.000567	-1.9668	-0.0010459	531.777288887594	82.858	0.98608	82.858	82.237	83.223	0					96	22	7	0	0	0	0.062622	1	10338	10338		124.08	1.9041	1	3301700			10041	38114	6797	6811	11613	11613					0.011017328607522359
EDLSWAKTL	9	Unmodified	_EDLSWAKTL_					0	0	0		TTC33|p.R172K|1|0.06|ENSG00000113638|chr5:40716419-40716419|C/T|missense_variant	TTC33|p.R172K|1|0.06|ENSG00000113638|chr5:40716419-40716419|C/T|missense_variant	TTC33|p.R172K|1|0.06|ENSG00000113638|chr5:40716419-40716419|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7750854492188	2	531.776939	1061.53933	1.0932	0.00058137	-1.7784	-0.00094572	-0.68517	-0.00036436	531.776185877007	82.947	1.0697	82.84	82.382	83.452	-0.10748					69	24	5	0	0	0	0.10174	1	10313	10313		110.12	3.1124	1	3816400			10042	38114	6797	6811	11614	11614					0.011017328607522359
EDLTLILP	8	Unmodified	_EDLTLILP_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.26055908203125	2	457.265676	912.516799	0.029374	1.3432E-05	-1.9302	-0.00088261	-1.9008	-0.00086918	457.2648224454646	77.635	0.67194	77.65	77.232	77.904	0.014267					24	15	2	0	0	0	0.027866	1	9548	9548		44.531	11.015	1	172310	+		10043	27885	6798	6812	11615	11615					0.057041334631549034
EDLTLILP	8	Unmodified	_EDLTLILP_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.265676	912.516799	0.60907	0.00027851	-2.4674	-0.0011282	-1.8583	-0.00084974	457.2644351119361	77.785	0.66462	77.574	77.165	77.83	-0.21087	-0.095963	9.8509E-05	NaN	52.299	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169410	+		10044	27885	6798	6812							0.057041334631549034
EDLTLILP	8	Unmodified	_EDLTLILP_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.265676	912.516799	-0.04132	-1.8894E-05	-2.7591	-0.0012616	-2.8004	-0.0012805	457.264344764678	78.048	0.80763	77.786	77.226	78.034	-0.26202	0.11624	-0.00016826	NaN	52.299	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185670	+		10045	27885	6798	6812							0.057041334631549034
EDLTVFLLQ	9	Unmodified	_EDLTVFLLQ_					0	0	0		ENST00000574429.1_1_17:6546189-6546336:+|nuORF	ENST00000574429.1_1_17:6546189-6546336:+|nuORF	ENST00000574429.1_1_17:6546189-6546336:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.80078125	2	539.294965	1076.57538	-0.21094	-0.00011376	-0.47783	-0.00025769	-0.68877	-0.00037145	539.2943051635774	87.592	1.2345	87.592	87.321	88.555	0					83	29	4	0	0	0	0.021513	1	11061	11061		104.75	0	1	2299100			10046	17086	6799	6813	11616	11616					0.04015190037625871
EDLVKLGGL	9	Unmodified	_EDLVKLGGL_					0	0	0			REV__ENST00000586846.1_1_17:74553872-74554101:+|nuORF	REV__ENST00000586846.1_1_17:74553872-74554101:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.800048828125	2	472.276575	942.538597	0.78728	0.00037181	-1.5118	-0.00071397	-0.72448	-0.00034215	472.27584319716414	77.618	0.41188	77.408	77.333	77.745	-0.21087					11	9	2	0	0	0	0.02435	1	9594	9594		42.396	10.441	1	141110	+		10047	35608	6800	6814	11617	11617					0.06502938211735909
EDLVSQGFTE	10	Unmodified	_EDLVSQGFTE_					0	0	0		nc|ENSG00000167770|Q96FW1-2|OTUB1;ENSG00000167770|ENST00000538426|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.3534545898438	2	562.758943	1123.50333	1.4796	0.00083263	0.51777	0.00029138	1.9973	0.001124	563.2600346467327	74.133	0.38461	74.133	73.955	74.34	0					12	8	2	0	0	0	0.03519	1	9096	9096		54.722	0	1	55233			10048	18482	6801	6815	11618	11618					-0.05347769106742817
EDLWQLVFQEF	11	Unmodified	_EDLWQLVFQEF_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7696228027344	3	485.23812	1452.69253	-0.79199	-0.0003843	-1.8429	-0.00089425	-2.6349	-0.0012785	485.2373545862116	35.38	0.7411	35.424	35.192	35.933	0.04406					27	18	2	0	0	0	0.024828	1	2654	2654		13.508	0	1	141280	+		10049	28456	6802	6816	11619	11619					-0.015706968134509225
EDLWRASACLW	11	Unmodified	_EDLWRASACLW_					0	0	0		ENST00000337907.7_2_1:8852535-8852640:-|nuORF	ENST00000337907.7_2_1:8852535-8852640:-|nuORF	ENST00000337907.7_2_1:8852535-8852640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.7935485839844	3	450.548412	1348.62341	-0.0033051	-1.4891E-06	1.928	0.00086865	1.9247	0.00086716	450.54946042825713	70.218	0.20485	69.968	69.858	70.063	-0.25063					7	4	2	0	0	0	0.024816	1	8179	8179		27.644	16.189	1	55250			10050	12431	6803	6817	11620	11620					-0.03696059313983824
EDLYLSHCT	9	Unmodified	_EDLYLSHCT_					0	0	0		ENST00000551665.1_1_12:54680429-54680832:+|nuORF;ENST00000551803.1_1_12:54679877-54680832:+|nuORF	ENST00000551665.1_1_12:54680429-54680832:+|nuORF	ENST00000551665.1_1_12:54680429-54680832:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7925415039062	2	540.736957	1079.45936	0.29994	0.00016219	2.7987	0.0015134	3.0986	0.0016756	540.7380804165681	78.268	0.33226	78.076	77.764	78.096	-0.1921					14	7	2	0	0	0	0.024541	1	9634	9634		17.365	0	1	94517			10051	16605	6804	6818	11621	11621					-0.0771907680473305
EDMDCEVEA	9	Unmodified	_EDMDCEVEA_					0	0	0			REV__BRPF3|p.Y154C|1|0.2|ENSG00000096070|chr6:36200783-36200783|A/G|missense_variant	REV__BRPF3|p.Y154C|1|0.2|ENSG00000096070|chr6:36200783-36200783|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.7662963867188	2	520.68099	1039.34743	-1.1413	-0.00059426	-3.1024	-0.0016154	-4.2437	-0.0022096	521.1797216846265	47.396	0.13537	47.455	47.354	47.489	0.059097					5	3	2	0	0	0	0.024263	1	4690	4690		34.173	5.023	1	68264	+		10052	19220	6805	6819	11622	11622					-0.17067298944039067
EDMIIHSSEQ	10	Unmodified	_EDMIIHSSEQ_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.3029174804688	2	594.763703	1187.51285	-0.92063	-0.00054756	0.60103	0.00035747	-0.3196	-0.00019008	594.7639934765895	41.515	0.42822	41.285	41.08	41.508	-0.23029					15	10	2	0	0	0	0.03519	1	3623	3623		45.972	1.5951	1	140680			10053	8227	6806	6820	11623	11623					-0.07340324092865558
EDMLARYFN	9	Unmodified	_EDMLARYFN_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.789306640625	2	579.766049	1157.51754	-0.34381	-0.00019933	3.0332	0.0017585	2.6894	0.0015592	579.7677862342556	49.432	0.82687	49.25	48.96	49.787	-0.18198					45	21	4	0	0	0	0.024539	1	4980	4980		20.947	3.4789	1	1709500	+		10054	24502	6807	6821	11624	11624					-0.054913951594471655
EDMLQLIN	8	Unmodified	_EDMLQLIN_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000583732.1_1_17:17722402-17726886:-|nuORF;ENST00000476994.1_1_17:17723326-17726886:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.78033447265625	2	488.244418	974.474282	-0.22038	-0.0001076	-3.6291	-0.0017719	-3.8495	-0.0018795	488.2424795178562	75.533	0.40239	75.274	75.075	75.477	-0.25866					17	9	2	0	0	0	0.027866	1	8959	8959		63.306	11.971	1	206400			10055	1476	6808	6822	11625	11625					-0.013975849367398041
EDMLRYMIN	9	Oxidation (M)	_EDMLRYM(Oxidation (M))IN_		EDMLRYM(1)IN		EDM(-39)LRYM(39)IN	0	0	1		ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	600.77294921875	2	600.773016	1199.53148	-0.89295	-0.00053646	1.6416	0.00098625	0.74869	0.00044979	600.7735674884666	39.556	1.1899	39.333	38.999	40.189	-0.22311					92	30	5	0	0	0	0.23085	1	3348	3348		84.916	12.036	2	2627400			10056	9615	6809	6823	11626	11626		397			-0.06030485722681078
EDMLRYMIN	9	Oxidation (M)	_EDMLRYM(Oxidation (M))IN_		EDMLRYM(1)IN		EDM(-59)LRYM(59)IN	0	0	1		ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	600.7735595703125	2	600.773016	1199.53148	-0.19086	-0.00011467	0.60963	0.00036625	0.41877	0.00025158	600.7731178607094	39.507	1.2561	39.281	38.983	40.239	-0.2257					97	32	6	0	0	0	0.16468	1	3336	3336		96.19	13.95	2	2630500			10057	9615	6809	6823	11627	11627		397			-0.06030485722681078
EDMLRYMIN	9	Oxidation (M)	_EDMLRYM(Oxidation (M))IN_					0	0	1		ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	600.773016	1199.53148	-1.3474	-0.00080947	1.4028	0.00084274	0.055384	3.3273E-05	600.7736508449267	39.234	0.90929	39.234	39.006	39.915	0	-0.05093	-7.588E-05	NaN	96.19	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1907200			10058	9615	6809	6823				397			-0.06030485722681078
EDMLRYMIN	9	Oxidation (M)	_EDMLRYM(Oxidation (M))IN_					0	0	1		ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	600.773016	1199.53148	-1.3347	-0.00080185	1.4904	0.00089537	0.15567	9.3522E-05	600.7736894281533	39.274	1.0732	39.175	38.88	39.953	-0.098755	-0.10973	2.9371E-05	NaN	96.19	72	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1801300			10059	9615	6809	6823				397			-0.06030485722681078
EDMLRYMIN	9	Oxidation (M)	_EDMLRYM(Oxidation (M))IN_					0	0	1		ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	600.773016	1199.53148	-1.9382	-0.0011644	2.075	0.0012466	0.13681	8.2192E-05	600.7740818099811	39.452	1.1434	39.476	39.206	40.349	0.023727	0.19119	0.00073185	NaN	96.19	64	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1750300			10060	9615	6809	6823				397			-0.06030485722681078
EDMLRYMIN	9	Oxidation (M)	_EDMLRYM(Oxidation (M))IN_					0	0	1		ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	ENSG00000187189|ENST00000420283|TSPYL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	600.773016	1199.53148	-0.87155	-0.00052361	0.37858	0.00022744	-0.49298	-0.00029617	600.7735159193124	39.374	1.2029	39.21	38.898	40.101	-0.16458	-0.074985	-0.0013065	NaN	96.19	91	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2735800			10061	9615	6809	6823				397			-0.06030485722681078
EDMNNCKWA	9	Unmodified	_EDMNNCKWA_					0	0	0			REV__LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	REV__LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7691040039062	2	555.720784	1109.42701	-0.2854	-0.0001586	4.0116	0.0022293	3.7262	0.0020707	555.7243226195333	38.664	0.24216	38.438	38.32	38.562	-0.2257					7	5	2	0	0	0	0.024523	1	3193	3193		15.642	0.97771	1	39362	+		10062	24575	6810	6824	11628	11628					-0.12332187479387358
EDMPPPVS	8	Unmodified	_EDMPPPVS_					0	0	0		ENST00000597011.5_1_19:49309952-49314169:-|nuORF	ENST00000597011.5_1_19:49309952-49314169:-|nuORF	ENST00000597011.5_1_19:49309952-49314169:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.209716796875	2	436.196936	870.379319	0.97285	0.00042435	0.20514	8.9483E-05	1.178	0.00051384	436.19693894730545	98.501	1.2363	98.498	97.932	99.168	-0.0022736					35	28	2	0	0	0	0.027866	1	12511	12511		7.6903	0	1	116430			10063	17441	6811	6825	11629	11629					-0.061055184079236824
EDMQVARQV	9	Unmodified	_EDMQVARQV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2948608398438	2	538.263673	1074.51279	-0.75324	-0.00040544	1.4286	0.00076899	0.6754	0.00036354	538.2641710158047	56.576	0.43499	56.576	56.277	56.712	0					15	11	2	0	0	0	0.024323	1	6277	6277		44.117	0	1	178960	+		10064	20941	6812	6826	11630	11630					-0.021482793022187252
EDMRNILT	8	Unmodified	_EDMRNILT_					0	0	0			REV__ENST00000544257.5_1_12:8935535-8935658:+|nuORF	REV__ENST00000544257.5_1_12:8935535-8935658:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2705383300781	2	496.247492	990.48043	0.77197	0.00038309	-0.22014	-0.00010924	0.55184	0.00027385	496.24687389574524	77.869	0.58971	77.627	77.362	77.952	-0.24232					21	13	3	0	0	0	0.027866	1	9286	9286		110.34	33.563	1	87150	+		10065	34810	6813	6827	11631	11631					-0.015190667052252138
EDMVIIYN	8	Unmodified	_EDMVIIYN_					0	0	0		nc|ENSG00000153936|Q7LGA3-3|HS2ST1;nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-3|HS2ST1	nc|ENSG00000153936|Q7LGA3-3|HS2ST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7694396972656	2	498.738968	995.463383	-1.1503	-0.00057369	-1.9102	-0.00095271	-3.0605	-0.0015264	498.73785783986176	25.017	0.56437	24.982	24.636	25.201	-0.034395					16	12	2	0	0	0	0.027866	1	1143	1143		31.955	0	1	39707			10066	6369	6814	6828	11632	11632					-0.034529873110159315
EDNEEIFNL	9	Unmodified	_EDNEEIFNL_					0	0	0			REV__ENST00000429775.2_1_X:70182861-70183140:+|nuORF	REV__ENST00000429775.2_1_X:70182861-70183140:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.2991333007812	2	561.751118	1121.48768	-0.90867	-0.00051045	-1.9228	-0.0010801	-2.8315	-0.0015906	561.7501751770843	65.512	0.5535	65.239	64.979	65.532	-0.27283					35	15	3	0	0	0	0.024438	1	7746	7746		52.937	13.684	1	521860	+		10067	27859	6815	6829	11633	11633					-0.06820055623779808
EDNERPKY	8	Unmodified	_EDNERPKY_					0	0	0			REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.274658203125	2	525.74617	1049.47779	-0.40522	-0.00021305	0.40498	0.00021292	-0.00023995	-1.2615E-07	525.7462939762522	34.753	0.62907	34.566	34.282	34.911	-0.18675					28	15	2	0	0	0	0.027866	1	2527	2527		42.396	8.2236	1	393770	+		10068	20156	6816	6830	11634	11634					-0.04497198838521399
EDNERPKYAR	10	Unmodified	_EDNERPKYAR_					0	0	0			REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.26617431640625	3	426.545947	1276.61601	-0.48905	-0.0002086	2.9754	0.0012692	2.4864	0.0010606	426.54716799450745	43.648	0.46487	43.41	43.174	43.639	-0.23737					31	12	3	0	0	0	0.03519	1	3990	3990		37.508	10.461	1	737490	+		10069	20156	6817	6831	11635	11635					-0.011230755900442091
EDNERRDPG	9	Unmodified	_EDNERRDPG_					0	0	0			REV__ENSG00000043462|ENST00000046794|LCP2	REV__ENSG00000043462|ENST00000046794|LCP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.8001098632812	2	544.241783	1086.46901	-0.92582	-0.00050387	-0.78373	-0.00042654	-1.7095	-0.00093041	544.239414998497	45.23	0.10638	45.019	44.95	45.056	-0.21109					4	2	2	0	0	0	0.024374	1	4257	4257		40.778	5.1599	1	48130	+		10070	20107	6818	6832	11636	11636					-0.07076172475012754
EDNKREITI	9	Unmodified	_EDNKREITI_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.2716674804688	2	559.296027	1116.5775	0.034109	1.9077E-05	3.6078	0.0020178	3.6419	0.0020369	559.2980856482425	93.196	0.34956	93.074	92.797	93.147	-0.12215					15	7	3	0	0	0	0.02435	1	11460	11460		42.396	0	1	66167	+		10071	23894	6819	6833	11637	11637					0.023876187754240163
EDNPEHQPL	9	Unmodified	_EDNPEHQPL_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.2971801757812	2	539.743628	1077.4727	-0.27737	-0.00014971	1.0207	0.00055093	0.74336	0.00040122	539.7440287471694	64.355	0.30002	64.401	64.225	64.525	0.045502					12	7	2	0	0	0	0.024337	1	7471	7471		41.427	4.2675	1	94460	+		10072	24004	6820	6834	11638	11638					-0.06293502701146281
EDNPWWPRSI	10	Unmodified	_EDNPWWPRSI_					0	0	0			REV__ENST00000351288.10_3_2:130930900-130931209:-|nuORF	REV__ENST00000351288.10_3_2:130930900-130931209:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7798767089844	3	433.875405	1298.60439	-0.27422	-0.00011898	-2.3734	-0.0010298	-2.6476	-0.0011487	433.87421245226665	42.393	0.51987	42.161	41.937	42.457	-0.23186					27	13	3	0	0	0	0.03519	1	3841	3841		8.0344	0	1	311760	+		10073	30733	6821	6835	11639	11639					-0.03297272613394853
EDPAFPLTPA	10	Unmodified	_EDPAFPLTPA_					0	0	0			REV__nc|ENSG00000236311|P0CAT3|TLX1NB	REV__nc|ENSG00000236311|P0CAT3|TLX1NB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7791748046875	2	529.263665	1056.51278	0.29293	0.00015504	-4.1734	-0.0022088	-3.8805	-0.0020538	529.7628834834213	86.42	0.47968	86.278	85.928	86.407	-0.14218					14	10	2	0	0	0	0.03519	1	10461	10461		27.882	0	1	39346	+		10074	37154	6822	6836	11640	11640					-0.013219560305742561
EDPALQIPP	9	Unmodified	_EDPALQIPP_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.25933837890625	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	0.83071	1	13577	13577		37.159	3.6435	1	6618800			10075	961	6823	6837	11641	11641					0.012100613150096251
EDPALQIPP	9	Unmodified	_EDPALQIPP_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2581787109375	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.98128	1	13523	13523		24.203	1.1603	1	6674100			10076	961	6823	6837	11642	11642					0.012100613150096251
EDPALQIPP	9	Unmodified	_EDPALQIPP_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2611389160156	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	0.59099	1	13203	13203		53.351	9.2347	1	4976900			10077	961	6823	6837	11643	11643					0.012100613150096251
EDPDDYDD	8	Unmodified	_EDPDDYDD_					0	0	0		ENST00000469334.5_1_17:38788437-38802054:-|nuORF;nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|522|33.96|0.3|6.83|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1	ENST00000469334.5_1_17:38788437-38802054:-|nuORF	ENST00000469334.5_1_17:38788437-38802054:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27301025390625	2	492.159259	982.303965	-0.70637	-0.00034765	2.4347	0.0011983	1.7283	0.00085061	492.1608978636448	23.639	0.21486	23.578	23.428	23.643	-0.060862					5	4	2	0	0	0	0.027866	1	937	937		12.959	8.2774	1	18890			10078	354	6824	6838	11644	11644					-0.1878944912532461
EDPEEDRKSTK	11	Unmodified	_EDPEEDRKSTK_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.74566650390625	3	445.212522	1332.61574	-0.45439	-0.0002023	1.3586	0.00060487	0.90422	0.00040257	445.2130629299141	25.021	0.56614	24.794	24.494	25.061	-0.22683					28	12	3	0	0	0	0.024757	1	1144	1144		15.337	2.38	1	171580			10079	4054	6825	6839	11645	11645					-0.037265401005925014
EDPHVRGGLP	10	Unmodified	_EDPHVRGGLP_					0	0	0		ENST00000538423.5_1_19:41903720-41916874:+|nuORF	ENST00000538423.5_1_19:41903720-41916874:+|nuORF	ENST00000538423.5_1_19:41903720-41916874:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.3082885742188	2	538.777805	1075.54106	0.25567	0.00013775	3.3667	0.0018139	3.6224	0.0019517	538.7794012060655	64.184	0.47382	64.229	63.975	64.448	0.045502					23	12	2	0	0	0	0.03519	1	7495	7495		25.574	0	1	750830			10080	16389	6826	6840	11646	11646					0.006307866693987307
EDPKERRISV	10	Unmodified	_EDPKERRISV_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.880126953125	3	410.226326	1227.65715	0.37726	0.00015476	1.4748	0.00060499	1.852	0.00075975	410.22681346965106	33.379	0.16689	33.379	33.287	33.454	0					5	4	2	0	0	0	0.03519	1	2412	2412		10.104	0	1	73502	+		10081	28316	6827	6841	11647	11647					0.052426854494115105
EDPKNVLND	9	Unmodified	_EDPKNVLND_					0	0	0			REV__nc|ENSG00000064490|O14593-2|RFXANK	REV__nc|ENSG00000064490|O14593-2|RFXANK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2741088867188	2	522.253828	1042.4931	0.13056	6.8187E-05	-1.442	-0.00075308	-1.3114	-0.0006849	522.2528554699901	90.526	0.71199	90.539	90.24	90.952	0.013443					34	16	3	0	0	0	0.024447	1	11413	11413		25.574	0	1	308330	+		10082	20286	6828	6842	11648	11648					-0.026443320413363836
EDPKPTNVI	9	Unmodified	_EDPKPTNVI_					0	0	0			REV__ENSG00000077522|ENST00000366578|ACTN2	REV__ENSG00000077522|ENST00000366578|ACTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8053894042969	2	506.769114	1011.52368	0.27618	0.00013996	4.0071	0.0020307	4.2833	0.0021706	506.77100570256613	89.272	0.63105	89.288	88.88	89.511	0.015907					19	14	2	0	0	0	0.023274	1	11213	11213		58.23	12.278	1	127010	+		10083	20594	6829	6843	11649	11649					0.01837446343722604
EDPKPTNVI	9	Unmodified	_EDPKPTNVI_					0	0	0			REV__ENSG00000077522|ENST00000366578|ACTN2	REV__ENSG00000077522|ENST00000366578|ACTN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.769114	1011.52368	-0.5632	-0.00028541	5.0183	0.0025431	4.4551	0.0022577	506.7719389406212	89.198	0.40768	89.036	88.849	89.257	-0.1626	-0.12062	0.00020974	NaN	58.23	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57389	+		10084	20594	6829	6843							0.01837446343722604
EDPKPTNVI	9	Unmodified	_EDPKPTNVI_					0	0	0			REV__ENSG00000077522|ENST00000366578|ACTN2	REV__ENSG00000077522|ENST00000366578|ACTN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.769114	1011.52368	-0.011571	-5.8636E-06	8.348	0.0042305	8.3365	0.0042247	506.7714689117109	89.225	1.1809	89.087	88.482	89.663	-0.13761	-0.068901	0.0035845	NaN	58.23	32	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104870	+		10085	20594	6829	6843							0.01837446343722604
EDPLFSLDVS	10	Unmodified	_EDPLFSLDVS_					0	0	0			REV__ENSG00000182521|ENST00000247219|TBPL2	REV__ENSG00000182521|ENST00000247219|TBPL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2257690429688	2	561.271687	1120.52882	-0.2782	-0.00015614	-3.266	-0.0018331	-3.5442	-0.0019892	561.269940027339	56.758	0.54182	56.59	56.245	56.786	-0.1672					16	13	2	0	0	0	0.03519	1	6137	6137		26.693	0	1	89373	+		10086	27485	6830	6844	11650	11650					-0.02662294584342817
EDPRKLLF	8	Unmodified	_EDPRKLLF_					0	0	0		nc|ENSG00000086991|Q9NPH5-5|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000086991|ENST00000263317|NOX4	nc|ENSG00000086991|Q9NPH5-5|NOX4	nc|ENSG00000086991|Q9NPH5-5|NOX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.76214599609375	2	509.290017	1016.56548	-0.19803	-0.00010085	-0.39355	-0.00020043	-0.59158	-0.00030128	509.2903372947217	49.363	0.38557	49.083	48.934	49.32	-0.27977					13	9	3	0	0	0	0.027866	1	4977	4977		38.806	0	1	143130			10087	1829	6831	6845	11651	11651					0.057860468229023354
EDPSRFRSL	9	Unmodified	_EDPSRFRSL_					0	0	0		ENST00000489515.1_1_22:37866003-37868629:-|nuORF;nc|ENSG00000100060|O00587-2|MFNG;ENSG00000100060|ENST00000356998|MFNG	ENST00000489515.1_1_22:37866003-37868629:-|nuORF	ENST00000489515.1_1_22:37866003-37868629:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8041381835938	2	553.783087	1105.55162	0.05297	2.9334E-05	-1.4579	-0.00080738	-1.405	-0.00077805	553.7820497259023	68.001	0.48224	67.763	67.549	68.031	-0.23814					25	11	3	0	0	0	0.024261	1	7874	7874		30.318	0	1	557450			10088	2125	6832	6846	11652	11652					0.0030676932381084043
EDPSVIGEF	9	Unmodified	_EDPSVIGEF_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.29718017578125	2	496.732197	991.449842	-0.23829	-0.00011837	3.205	0.001592	2.9667	0.0014736	496.7336906676543	69.163	0.33842	69.178	69.014	69.352	0.015129					12	8	2	0	0	0	0.024354	1	8265	8265		38.806	9.6566	1	112930			10089	4917	6833	6847	11653	11653					-0.04622521818612313
EDPSWITRI	9	Unmodified	_EDPSWITRI_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ZBTB20|p.P692Lfs*43|2|0.29|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.265625	2	558.787838	1115.56112	-0.533	-0.00029784	-2.5741	-0.0014384	-3.1071	-0.0017362	558.7861558829424	80.184	0.67214	80.206	79.771	80.443	0.021439					32	15	3	0	0	0	0.024466	1	9866	9866		31.53	14.165	1	134000			10090	9063	6834	6848	11654	11654					0.007965376093125087
EDPTLLNI	8	Unmodified	_EDPTLLNI_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2583312988281	2	457.745108	913.475663	0.15351	7.0269E-05	1.1302	0.00051734	1.2837	0.00058761	457.7454074135608	61.996	0.89635	61.77	61.153	62.049	-0.22663					33	23	2	0	0	0	0.027866	1	7116	7116		88.643	36.344	1	236470			10091	6560	6835	6849	11655	11655					0.015463724236610688
EDPVAYKAIK	10	Unmodified	_EDPVAYKAIK_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.329833984375	2	567.313689	1132.61282	-1.5794	-0.00089604	2.2589	0.0012815	0.67947	0.00038547	567.3153797043868	91.475	0.34091	91.475	91.256	91.597	0					11	7	2	0	0	0	0.03519	1	11588	11588		30.318	0	1	76249	+		10092	24983	6836	6850	11656	11656					0.05182281303200398
EDPVLLPR	8	Unmodified	_EDPVLLPR_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7552795410156	2	469.768917	937.523281	-0.42214	-0.00019831	0.36279	0.00017043	-0.059351	-2.7881E-05	469.76895451638296	37.719	0.87598	37.719	37.195	38.071	0					54	24	3	0	0	0	0.027866	1	3044	3044		33.516	17.042	1	1462600	+		10093	22540	6837	6851	11657	11657					0.0520207141452147
EDQELSSFLSW	11	Unmodified	_EDQELSSFLSW_					0	0	0		ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2584228515625	3	447.538347	1339.59321	0.39659	0.00017749	-0.24198	-0.00010829	0.15461	6.9195E-05	447.5380960026254	42.226	0.58257	42.226	41.987	42.569	0					36	16	3	0	0	0	0.024779	1	3917	3917		27.644	10.176	1	716230			10094	15243	6838	6852	11658	11658					-0.06300139498193857
EDQELSSFLSW	11	Unmodified	_EDQELSSFLSW_					0	0	0		ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	447.538347	1339.59321	0.022077	9.8802E-06	0.40666	0.000182	0.42874	0.00019188	447.5383566312507	42.447	0.56747	42.324	42.116	42.683	-0.12299	-0.037754	0.00017787	NaN	16.53	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411850			10095	15243	6838	6852							-0.06300139498193857
EDQELSSFLSW	11	Unmodified	_EDQELSSFLSW_					0	0	0		ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	447.538347	1339.59321	-0.38159	-0.00017078	0.66877	0.0002993	0.28718	0.00012853	447.53862463559983	42.642	0.80583	42.41	42.079	42.885	-0.23186	0.048329	0.00052978	NaN	16.53	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492980			10096	15243	6838	6852							-0.06300139498193857
EDQELSSFLSW	11	Unmodified	_EDQELSSFLSW_					0	0	0		ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	447.538347	1339.59321	-0.34796	-0.00015572	0.58059	0.00025984	0.23264	0.00010411	447.538408369227	42.667	0.7313	42.441	42.22	42.951	-0.22597	0.078723	0.00041139	NaN	16.53	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482210			10097	15243	6838	6852							-0.06300139498193857
EDQHPLRRG	9	Unmodified	_EDQHPLRRG_					0	0	0			REV__ENST00000484201.5_1_1:114440516-114447658:-|nuORF	REV__ENST00000484201.5_1_1:114440516-114447658:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3107299804688	2	554.286328	1106.5581	-1.0168	-0.00056357	-0.33429	-0.00018529	-1.351	-0.00074887	554.7868175210743	44.19	0.68331	44.19	43.836	44.519	0					34	19	3	0	0	0	0.024354	1	4187	4187		30.504	0	1	248220	+		10098	33533	6839	6853	11659	11659					0.009087072751754022
EDQKEKAEV	9	Unmodified	_EDQKEKAEV_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2816772460938	2	538.266936	1074.51932	-1.7217	-0.00092674	-0.67513	-0.0003634	-2.3968	-0.0012901	538.2667538709646	65.296	0.44911	65.093	64.899	65.348	-0.20254					16	10	2	0	0	0	0.024427	1	7428	7428		42.396	11.892	1	119700	+		10099	23231	6840	6854	11660	11660					-0.01496062869864545
EDQLIEQI	8	Unmodified	_EDQLIEQI_					0	0	0		ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant;ENSG00000232040|ENST00000452236|SCAND3	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7850341796875	2	494.253297	986.492041	-1.0001	-0.0004943	1.6313	0.00080628	0.63121	0.00031198	494.2540117463402	29.769	0.44094	29.847	29.566	30.007	0.078344					15	10	2	0	0	0	0.027866	1	1826	1826		45.952	0	1	112610			10100	10703	6841	6855	11661	11661					-0.0017454641023277873
EDQMSLFIS	9	Unmodified	_EDQMSLFIS_					0	0	0			REV__nc|ENSG00000136371|P49914-2|MTHFS	REV__nc|ENSG00000136371|P49914-2|MTHFS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.2365112304688	2	535.247157	1068.47976	-0.25221	-0.000135	3.1487	0.0016854	2.8965	0.0015504	535.2486775412146	69.508	0.53255	69.257	68.991	69.524	-0.25063					21	12	2	0	0	0	0.024427	1	8039	8039		42.396	27.531	1	307340	+		10101	23650	6842	6856	11662	11662					-0.05173906144932516
EDQNLPNLN	9	Unmodified	_EDQNLPNLN_					0	0	0			REV__ENSG00000088356|ENST00000202017|PDRG1	REV__ENSG00000088356|ENST00000202017|PDRG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.60791015625	2	528.751453	1055.48835	-0.22707	-0.00012006	3.895	0.0020595	3.6679	0.0019394	528.753434906998	72.495	0.97635	72.218	71.908	72.884	-0.2769					47	22	3	0	0	0	0.024539	1	8555	8555		14.865	0	1	297460	+		10102	20812	6843	6857	11663	11663					-0.03717216184099925
EDQRLINL	8	Unmodified	_EDQRLINL_					0	0	0		nc|ENSG00000204463|P46379|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;ENSG00000204463|ENST00000676615|BAG6;BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7895202636719	2	500.774731	999.534909	-0.11731	-5.8744E-05	-3.6658	-0.0018357	-3.7831	-0.0018945	500.77382300311774	92.979	0.46799	92.979	92.751	93.219	0					18	10	3	0	0	0	0.027866	1	11804	11804		38.806	0	1	100910			10103	18661	6844	6858	11664	11664					0.03512268437839339
EDQRTPNL	8	Unmodified	_EDQRTPNL_					0	0	0			REV__ENSG00000160445|ENST00000291900|ZER1	REV__ENSG00000160445|ENST00000291900|ZER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2633361816406	2	486.740888	971.467223	-1.2786	-0.00062233	0.80748	0.00039304	-0.47108	-0.0002293	486.74099052782816	30.474	0.62025	30.474	30.096	30.717	0					23	14	2	0	0	0	0.027866	1	1988	1988		29.15	0	1	89274	+		10104	25321	6845	6859	11665	11665					-0.01965181492960255
EDQSLFKL	8	Unmodified	_EDQSLFKL_					0	0	0			REV__ENSG00000106304|ENST00000682466|SPAM1	REV__ENSG00000106304|ENST00000682466|SPAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2575988769531	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.0009	1	13565	13565		37.159	5.2042	1	6618800	+		10105	21607	6846	6860	11666	11666					0.012100613150096251
EDRAHCGVS	9	Unmodified	_EDRAHCGVS_					0	0	0		ENST00000413133.6_1_8:38314980-38316493:-|nuORF;ENST00000530568.5_1_8:38314980-38324137:-|nuORF;ENST00000425967.7_1_8:38314980-38318703:-|nuORF;ENST00000397091.9_1_8:38314980-38325693:-|nuORF	ENST00000413133.6_1_8:38314980-38316493:-|nuORF	ENST00000413133.6_1_8:38314980-38316493:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.21197509765625	2	487.21144	972.408328	-0.065439	-3.1883E-05	0.83491	0.00040678	0.76947	0.0003749	487.2117202140711	55.044	0.66921	54.813	54.459	55.128	-0.23087					54	18	4	0	0	0	0.35646	1	5874	5874		68.787	0.30212	1	1961200			10106	13836	6847	6861	11667	11667					-0.07897981058931691
EDRDFAFAR	9	Unmodified	_EDRDFAFAR_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8090209960938	2	563.767437	1125.52032	-0.2205	-0.00012431	2.2459	0.0012662	2.0254	0.0011418	563.7673858547402	71.678	0.44429	71.689	71.434	71.879	0.010735					21	11	3	0	0	0	0.024261	1	8603	8603		45.972	7.1661	1	112920	+		10107	25874	6848	6862	11668	11668					-0.03741803710295244
EDREHAVRWH	10	Unmodified	_EDREHAVRWH_					0	0	0			REV__ENSG00000165125|ENST00000359396|TRPV6	REV__ENSG00000165125|ENST00000359396|TRPV6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.2249450683594	3	445.549803	1333.62758	-0.81467	-0.00036298	-3.8575	-0.0017187	-4.6721	-0.0020817	445.54917961907995	30.274	0.25017	30.096	29.953	30.203	-0.17817					6	5	2	0	0	0	0.03519	1	1911	1911		19.263	0	1	35879	+		10108	25843	6849	6863	11669	11669					-0.02588833776053434
EDREPNFA	8	Unmodified	_EDREPNFA_					0	0	0		ENST00000539828.6_1_16:68119591-68225707:+|nuORF;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF	ENST00000539828.6_1_16:68119591-68225707:+|nuORF	ENST00000539828.6_1_16:68119591-68225707:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265625	2	489.219788	976.425024	-1.1505	-0.00056283	-3.3065	-0.0016176	-4.457	-0.0021804	489.21906004339047	55.877	0.50874	55.721	55.424	55.933	-0.15655					19	13	2	0	0	0	0.027866	1	5992	5992		57.811	9.8957	1	218310			10109	1486	6850	6864	11670	11670					-0.0641315690133979
EDRHMQLINQL	11	Unmodified	_EDRHMQLINQL_					0	0	0			REV__ENSG00000160401|ENST00000373295|CFAP157	REV__ENSG00000160401|ENST00000373295|CFAP157	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2877197265625	3	466.238237	1395.69288	-0.027821	-1.2971E-05	-3.8793	-0.0018087	-3.9071	-0.0018217	466.23633673874457	76.155	0.38132	75.897	75.634	76.016	-0.25865					12	9	2	0	0	0	0.024801	1	9039	9039		12.957	0	1	66290	+		10110	25319	6851	6865	11671	11671					0.010863996348007277
EDRISAKDL	9	Unmodified	_EDRISAKDL_					0	0	0		ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.8159790039062	2	523.77747	1045.54039	-0.21527	-0.00011275	-0.094491	-4.9492E-05	-0.30976	-0.00016224	523.7792966727029	74.998	1.0685	75.009	74.181	75.25	0.010368					36	25	2	0	0	0	0.024466	1	9026	9026		31.53	15.057	1	261090			10111	4018	6852	6866	11672	11672					0.019439472296653548
EDRISAKDL	9	Unmodified	_EDRISAKDL_					0	0	0		ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.77747	1045.54039	-0.35229	-0.00018452	1.3851	0.0007255	1.0328	0.00054097	523.7792899804102	75.254	0.73399	75.01	74.675	75.409	-0.24455	0.00051246	0.00068153	NaN	36.447	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251200			10112	4018	6852	6866							0.019439472296653548
EDRKGKLNQR	10	Unmodified	_EDRKGKLNQR_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3501586914062	2	622.346917	1242.67928	-0.11463	-7.1341E-05	0.69395	0.00043188	0.57932	0.00036054	622.3474282644756	94.376	2.5846	94.228	93.304	95.889	-0.14771					133	59	3	0	0	0	1.1265	1	11686	11686		24.519	0	1	353230	+		10113	27005	6853	6867	11673	11673					0.06764909917842488
EDRKLPAPG	9	Unmodified	_EDRKLPAPG_					0	0	0		nc|ENSG00000181090|Q9H9B1-3|EHMT1;ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF	nc|ENSG00000181090|Q9H9B1-3|EHMT1	nc|ENSG00000181090|Q9H9B1-3|EHMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2976379394531	2	491.769448	981.524344	-0.6484	-0.00031886	1.5566	0.00076549	0.90821	0.00044663	491.77028680355477	47.49	0.39664	47.393	47.161	47.558	-0.096649					14	10	2	0	0	0	0.024263	1	4651	4651		9.1829	0	1	155470			10114	9023	6854	6868	11674	11674					0.03284285783422547
EDRKQLGL	8	Unmodified	_EDRKQLGL_					0	0	0		ENST00000374472.4_1_1:24201871-24239835:-|nuORF	ENST00000374472.4_1_1:24201871-24239835:-|nuORF	ENST00000374472.4_1_1:24201871-24239835:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2816467285156	2	479.769448	957.524344	-0.112	-5.3735E-05	-3.5698	-0.0017127	-3.6818	-0.0017664	479.7677455294592	85.458	0.74386	85.401	85.022	85.766	-0.05761					33	17	3	0	0	0	0.027866	1	10683	10683		30.504	0	1	318410			10115	13116	6855	6869	11675	11675					0.04388285783431911
EDRPLSQL	8	Unmodified	_EDRPLSQL_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7809143066406	2	479.253631	956.49271	-0.23736	-0.00011375	0.14823	7.1038E-05	-0.089132	-4.2717E-05	479.2536398316892	46.764	1.2501	46.815	46.131	47.381	0.051395					94	34	4	0	0	0	0.027866	1	4615	4615		76.774	0	1	4182100			10116	5209	6856	6870	11676	11676					0.012722930294785328
EDRPSTIRFDG	11	Unmodified	_EDRPSTIRFDG_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.22235107421875	3	431.545836	1291.61568	0.56545	0.00024402	0.046199	1.9937E-05	0.61165	0.00026395	431.5457627752407	24.98	0.51099	25.058	24.823	25.334	0.078344					18	11	2	0	0	0	0.024723	1	1110	1110		37.6	11.537	1	50064	+		10117	28270	6857	6871	11677	11677					-0.018464953099055492
EDRPSTIRFDG	11	Unmodified	_EDRPSTIRFDG_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	431.545836	1291.61568	-0.60027	-0.00025904	-0.38831	-0.00016758	-0.98859	-0.00042662	431.88056931515075	25.087	0.2919	25.087	24.919	25.211	0	0.0002151	-0.00025961	NaN	37.6	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41146	+		10118	28270	6857	6871							-0.018464953099055492
EDRPSTIRFDG	11	Unmodified	_EDRPSTIRFDG_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	431.545836	1291.61568	-0.28273	-0.00012201	0.41037	0.00017709	0.12764	5.5084E-05	431.54591804292687	25.437	0.62683	25.211	25.018	25.645	-0.22683	0.12386	0.00077439	NaN	37.6	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98798	+		10119	28270	6857	6871							-0.018464953099055492
EDRPSTIRFDG	11	Unmodified	_EDRPSTIRFDG_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	431.545836	1291.61568	0.04848	2.0921E-05	0.44766	0.00019319	0.49614	0.00021411	431.54580796845784	25.189	0.71981	25.018	24.737	25.457	-0.17078	-0.068842	0.00082267	NaN	37.6	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83572	+		10120	28270	6857	6871							-0.018464953099055492
EDRPSTIRFDG	11	Unmodified	_EDRPSTIRFDG_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	431.545836	1291.61568	0.98378	0.00042455	-1.6023	-0.00069145	-0.61848	-0.0002669	431.5452693816916	25.232	0.49982	25.06	24.865	25.365	-0.17151	-0.026579	-0.0018312	NaN	37.6	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53140	+		10121	28270	6857	6871							-0.018464953099055492
EDRQCMVL	8	Unmodified	_EDRQCMVL_					0	0	0			REV__ENST00000558190.5_1_14:92530495-92530618:-|nuORF	REV__ENST00000558190.5_1_14:92530495-92530618:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.26861572265625	2	497.228245	992.441936	-0.67319	-0.00033473	-1.6368	-0.00081385	-2.31	-0.0011486	497.22718927649294	36.055	0.79297	36.055	35.647	36.44	0					37	21	2	0	0	0	0.027866	1	2881	2881		38.806	14.603	1	222380	+		10122	35091	6858	6872	11678	11678					-0.054586956113780616
EDRQLVAR	8	Unmodified	_EDRQLVAR_					0	0	0			REV__ENSG00000168522|ENST00000302279|FNTA	REV__ENSG00000168522|ENST00000302279|FNTA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30572509765625	2	493.772522	985.530492	1.2002	0.00059263	1.4542	0.00071804	2.6544	0.0013107	493.77331964205916	85.52	0.21207	85.52	85.372	85.584	0					6	4	2	0	0	0	0.027866	1	10713	10713		55.504	16.698	1	30912	+		10123	26270	6859	6873	11679	11679					0.03714804014941819
EDRQSPSV	8	Unmodified	_EDRQSPSV_					0	0	0			REV__nc|ENSG00000118816|Q14094-2|CCNI	REV__nc|ENSG00000118816|Q14094-2|CCNI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2688293457031	2	459.219788	916.425024	-0.087373	-4.0123E-05	-1.8784	-0.00086262	-1.9658	-0.00090274	459.21897919261085	48.061	0.32899	48.128	47.936	48.265	0.066795					14	8	3	0	0	0	0.027866	1	4807	4807		47.657	0	1	229930	+		10124	22425	6860	6874	11680	11680					-0.036531569013277476
EDRRERKS	8	Unmodified	_EDRRERKS_					0	0	0			REV__ENSG00000167670|ENST00000301280|CHAF1A	REV__ENSG00000167670|ENST00000301280|CHAF1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8024291992188	2	538.283786	1074.55302	-0.37234	-0.00020042	-2.1861	-0.0011767	-2.5584	-0.0013772	538.2821704859825	93.757	0.24621	93.757	93.602	93.848	0					7	5	2	0	0	0	0.027866	1	11897	11897		40.778	0	1	32763	+		10125	26174	6861	6875	11681	11681					0.01872403412562562
EDRRPITV	8	Unmodified	_EDRRPITV_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;nc|ENSG00000119522|Q8TEH3-4|DENND1A;ENST00000479305.5_1_9:126200042-126224279:-|nuORF;ENST00000462245.1_1_9:126202450-126219642:-|nuORF	nc|ENSG00000119522|Q8TEH3-2|DENND1A;ENST00000462245.1_1_9:126202450-126219642:-|nuORF	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.7503967285156	2	493.274898	984.535243	-0.30859	-0.00015222	3.4538	0.0017037	3.1452	0.0015514	493.27607069886704	46	0.18905	45.904	45.849	46.039	-0.096649					5	4	2	0	0	0	0.027866	1	4405	4405		17.365	3.9109	1	42542			10126	18210;14701	6862	6876	11682	11682					0.042356881577120475
EDRTMDLAF	9	Unmodified	_EDRTMDLAF_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2639770507812	2	549.250231	1096.48591	-0.099657	-5.4737E-05	-0.45965	-0.00025246	-0.55931	-0.0003072	549.250079576363	45.915	0.848	45.818	45.191	46.039	-0.096653					30	23	2	0	0	0	0.024354	1	4428	4428		38.806	0	1	916780	+		10127	28289	6863	6877	11683	11683					-0.05847387913399871
EDRTSLVLN	9	Unmodified	_EDRTSLVLN_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2894287109375	2	523.77747	1045.54039	0.7279	0.00038126	-0.30377	-0.00015911	0.42413	0.00022215	523.7780603643375	51.813	0.47794	51.629	51.374	51.852	-0.18405					16	12	2	0	0	0	0.022411	1	5309	5309		113.41	8.665	1	167170			10128	7418	6864	6878	11684	11684					0.019439472296880922
EDRWNKNL	8	Unmodified	_EDRWNKNL_					0	0	0			REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF;REV__nc|ENSG00000146872|Q86UE8|TLK2;REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7966918945312	2	537.76998	1073.52541	-0.64271	-0.00034563	3.4709	0.0018665	2.8282	0.0015209	537.7716766465937	78.261	1.0757	78.261	77.876	78.951	0					57	25	3	0	0	0	0.027866	1	9636	9636		87.754	23.547	1	1889800	+		10129	36760;34550;32029	6865	6879	11685	11685					-0.00841499847660998
EDSDLKEGGK	10	Unmodified	_EDSDLKEGGK_					0	0	0		ENSG00000100422|ENST00000216264|CERK;nc|ENSG00000100422|Q8TCT0-2|CERK	ENSG00000100422|ENST00000216264|CERK	ENSG00000100422|ENST00000216264|CERK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.8162841796875	2	539.256568	1076.49858	0.12472	6.7256E-05	-0.35565	-0.00019179	-0.23093	-0.00012453	539.2566715641611	37.295	0.92295	37.295	36.846	37.769	0					32	24	2	0	0	0	0.03519	1	3027	3027		42.864	2.0861	1	247740			10130	2200	6866	6880	11686	11686					-0.03660653249517054
EDSDLKEGGK	10	Unmodified	_EDSDLKEGGK_					0	0	0		ENSG00000100422|ENST00000216264|CERK;nc|ENSG00000100422|Q8TCT0-2|CERK	ENSG00000100422|ENST00000216264|CERK	ENSG00000100422|ENST00000216264|CERK	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.256568	1076.49858	-0.71176	-0.00038382	0.61008	0.00032899	-0.10167	-5.4828E-05	539.257125992723	37.221	0.99495	37.253	36.756	37.751	0.032269	0.0058508	0.00040889	NaN	42.864	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231650			10131	2200	6866	6880							-0.03660653249517054
EDSDRLLEL	9	Unmodified	_EDSDRLLEL_					0	0	0			REV__ENSG00000101213|ENST00000542869|PTK6	REV__ENSG00000101213|ENST00000542869|PTK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2750854492188	2	545.274761	1088.53497	-0.48422	-0.00026403	-0.41899	-0.00022847	-0.90322	-0.0004925	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.40693	1	9445	9445		65.465	21.349	1	63206000	+		10132	21202	6867	6881	11687	11687					-0.00575776352820867
EDSDRLLEL	9	Unmodified	_EDSDRLLEL_					0	0	0			REV__ENSG00000101213|ENST00000542869|PTK6	REV__ENSG00000101213|ENST00000542869|PTK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2747192382812	2	545.274761	1088.53497	-0.30268	-0.00016504	-0.63341	-0.00034538	-0.93608	-0.00051042	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.37611	3	9779	9438;9779;9792		67.494	8.5595	1	57394000	+		10133	21202	6867	6881	11688;11689;11690	11689					-0.00575776352820867
EDSFKESW	8	Unmodified	_EDSFKESW_					0	0	0			REV__nc|ENSG00000164741|Q96QB1-4|DLC1	REV__nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8031616210938	2	514.221997	1026.42944	1.0531	0.00054152	-3.1859	-0.0016382	-2.1328	-0.0010967	514.2201452764765	59.931	0.37574	59.733	59.499	59.874	-0.19742					15	9	2	0	0	0	0.027866	1	6620	6620		33.516	1.5607	1	124500	+		10134	25797	6868	6882	11691	11691					-0.08271692478410841
EDSFYGLW	8	Unmodified	_EDSFYGLW_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.291748046875	2	508.721633	1015.42871	-0.19281	-9.8087E-05	-3.6533	-0.0018585	-3.8461	-0.0019566	508.7200628740046	53.378	0.37135	53.251	53.066	53.437	-0.12705					14	9	2	0	0	0	0.027866	1	5567	5567		21.702	14.967	1	121860			10135	3747	6869	6883	11692	11692					-0.07838487127480676
EDSGHDVASSL	11	Unmodified	_EDSGHDVASSL_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.3212890625	2	558.743825	1115.4731	-0.071317	-3.9848E-05	-1.2929	-0.00072237	-1.3642	-0.00076222	558.7427440538905	67.391	0.40234	67.391	67.126	67.528	0					18	9	2	0	0	0	0.02479	1	8046	8046		60.118	12.159	1	132140	+		10136	25992	6870	6884	11693	11693					-0.08002127771942469
EDSGPNVSIMS	11	Unmodified	_EDSGPNVSIMS_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.2299194335938	2	568.250428	1134.4863	-0.60632	-0.00034454	3.8863	0.0022084	3.28	0.0018638	568.2520429316903	38.253	0.1251	38.034	37.957	38.083	-0.21848					5	3	2	0	0	0	0.024741	1	3132	3132		37.812	11.119	1	122910	+		10137	27559	6871	6885	11694	11694					-0.07556012984218796
EDSIAQEEGY	10	Unmodified	_EDSIAQEEGY_					0	0	0			REV__ENSG00000159147|ENST00000303071|DONSON	REV__ENSG00000159147|ENST00000303071|DONSON	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.7279052734375	2	570.738208	1139.46186	-1.833	-0.0010462	2.4359	0.0013902	0.60281	0.00034405	570.7397441247277	52.136	0.61817	51.867	51.62	52.238	-0.26903					27	16	2	0	0	0	0.03519	1	5351	5351		45.972	15.655	1	169460	+		10138	25236	6872	6886	11695	11695					-0.10228949866063886
EDSLFLFLF	9	Unmodified	_EDSLFLFLF_					0	0	0		ENST00000335712.10_2_2:60686003-60686195:-|nuORF	ENST00000335712.10_2_2:60686003-60686195:-|nuORF	ENST00000335712.10_2_2:60686003-60686195:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.8357543945312	2	565.792058	1129.56956	-0.51751	-0.0002928	-2.28	-0.00129	-2.7975	-0.0015828	565.7904805031914	21.986	0.53116	21.784	21.614	22.146	-0.20199					21	10	3	0	0	0	0.024535	1	714	714		25.45	0	1	96713			10139	12395	6873	6887	11696	11696					0.009960915259398462
EDSLMIECSA	10	Unmodified	_EDSLMIECSA_					0	0	0		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.2594604492188	2	549.228107	1096.44166	-0.52792	-0.00028995	1.4063	0.00077237	0.87837	0.00048242	549.2296044903024	39.99	0.25872	39.84	39.746	40.004	-0.1497					10	6	3	0	0	0	0.03519	1	3442	3442		26.693	3.6504	1	68561			10140	9630	6874	6888	11697	11697					-0.10270160121899607
EDSRHAGPPV	10	Unmodified	_EDSRHAGPPV_					0	0	0		ENSG00000138411|ENST00000644978|HECW2;ENST00000462290.1_1_2:197122524-197143302:-|nuORF	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8056640625	2	532.759612	1063.50467	0.92289	0.00049168	-2.1604	-0.001151	-1.2375	-0.00065929	532.7585964467331	20.334	0.88687	20.403	20.069	20.956	0.068901					21	17	2	0	0	0	0.03519	1	494	494		49.442	10.189	1	36056			10141	5241	6875	6889	11698	11698					-0.02454090227342931
EDSRRRRA	8	Unmodified	_EDSRRRRA_					0	0	0		ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2637329101562	2	523.28412	1044.55369	-0.88492	-0.00046306	1.9036	0.00099611	1.0187	0.00053305	523.2840832860732	54.317	0.36297	54.181	53.928	54.291	-0.13616					16	10	3	0	0	0	0.027866	1	5768	5768		66.429	13.078	1	211130			10142	4592	6876	6890	11699	11699					0.033192428522852424
EDSWTWRR	8	Unmodified	_EDSWTWRR_					0	0	0		ENST00000492315.5_1_7:100864992-100867236:+|nuORF	ENST00000492315.5_1_7:100864992-100867236:+|nuORF	ENST00000492315.5_1_7:100864992-100867236:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.230224609375	2	568.267604	1134.52066	-0.77165	-0.0004385	4.4394	0.0025228	3.6678	0.0020843	568.2694225933133	38.025	1.1062	37.804	37.269	38.375	-0.22148					62	30	3	0	0	0	0.027866	1	3144	3144		40.573	13.88	1	340980			10143	15482	6877	6891	11700	11700					-0.04122383990443268
EDSWTWRR	8	Unmodified	_EDSWTWRR_					0	0	0		ENST00000492315.5_1_7:100864992-100867236:+|nuORF	ENST00000492315.5_1_7:100864992-100867236:+|nuORF	ENST00000492315.5_1_7:100864992-100867236:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.2298583984375	2	568.267604	1134.52066	-0.84762	-0.00048168	4.1225	0.0023427	3.2748	0.001861	568.2694053570506	37.953	1.2635	37.735	37.104	38.368	-0.21848					72	34	3	0	0	0	0.027866	1	3143	3143		38.806	0	1	277470			10144	15482	6877	6891	11701	11701					-0.04122383990443268
EDSYFVMDL	9	Unmodified	_EDSYFVMDL_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2982788085938	2	559.739165	1117.46378	-0.15501	-8.6766E-05	-2.076	-0.001162	-2.231	-0.0012488	559.7375736332649	72.711	0.41679	72.711	72.493	72.91	0					14	9	2	0	0	0	0.02435	1	8828	8828		42.396	0	1	82581	+		10145	20707	6878	6892	11702	11702					-0.09025612381833525
EDSYMDVVFL	10	Unmodified	_EDSYMDVVFL_					0	0	0		nc|ENSG00000172752|A8TX70|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2351989746094	3	406.518007	1216.53219	0.070385	2.8613E-05	-1.3943	-0.0005668	-1.3239	-0.00053819	406.8517633249732	29.35	0.21687	29.178	29.025	29.242	-0.17258					5	4	2	0	0	0	0.03519	1	1769	1769		33.922	0	1	41560			10146	8301	6879	6893	11703	11703					-0.06741367801987508
EDTCAPPAEL	10	Unmodified	_EDTCAPPAEL_					0	0	0		nc|ENSG00000227059|E9PGG2|ANHX;ENSG00000227059|ENST00000545940|ANHX	nc|ENSG00000227059|E9PGG2|ANHX	nc|ENSG00000227059|E9PGG2|ANHX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.304931640625	2	523.228965	1044.44338	-0.90517	-0.00047361	-2.8499	-0.0014911	-3.7551	-0.0019648	523.227718528269	67.14	0.44244	67.14	66.883	67.326	0					20	10	3	0	0	0	0.03519	1	7974	7974		47.657	9.8458	1	166960			10147	10669	6880	6894	11704	11704					-0.07706783041658127
EDTDDPFY	8	Unmodified	_EDTDDPFY_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.231689453125	2	501.190362	1000.36617	-0.41543	-0.00020821	-3.1333	-0.0015704	-3.5487	-0.0017786	501.1886833611693	45.11	0.49409	44.858	44.63	45.124	-0.25252					22	12	2	0	0	0	0.027866	1	4237	4237		28.254	1.4582	1	386350	+		10148	23757	6881	6895	11705	11705					-0.1339967798633097
EDTEAMSKV	9	Unmodified	_EDTEAMSKV_					0	0	0		ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.2642517089844	2	505.228965	1008.44338	-0.45632	-0.00023055	1.2717	0.00064251	0.81539	0.00041196	505.22917928080136	53.196	0.36764	53.196	52.864	53.232	0					13	9	2	0	0	0	0.024405	1	5687	5687		35.618	0	1	88480			10149	10815	6882	6896	11706	11706					-0.060507830416327124
EDTECHIKT	9	Unmodified	_EDTECHIKT_					0	0	0			REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2948608398438	2	538.239864	1074.46517	-0.54497	-0.00029333	0.60489	0.00032558	0.059919	3.2251E-05	538.2397937374554	55.926	0.85719	55.926	55.786	56.643	0					36	23	2	0	0	0	0.024288	1	6277	6277		44.377	11.565	1	242070	+		10150	20860	6883	6897	11707	11707					-0.06907978293065753
EDTEEARLN	9	Unmodified	_EDTEEARLN_					0	0	0		ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2450561523438	2	538.746367	1075.47818	-0.33672	-0.00018141	-3.7749	-0.0020337	-4.1116	-0.0022151	538.7449406193238	55.902	0.50935	55.686	55.372	55.881	-0.21607					39	13	4	0	0	0	0.024261	1	6041	6041		45.972	17.718	1	4607600			10151	3598	6884	6898	11708	11708					-0.05653823909324274
EDTGLRVEL	9	Unmodified	_EDTGLRVEL_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2710571289062	2	516.272021	1030.52949	-0.109	-5.6275E-05	-0.5098	-0.0002632	-0.61881	-0.00031947	516.2716804800933	49.272	0.82863	48.993	48.718	49.547	-0.27977					48	21	3	0	0	0	0.34489	1	4937	4937		69.628	0	1	3593100			10152	9904	6885	6899	11709	11709					0.01544544855391905
EDTGLRVEL	9	Unmodified	_EDTGLRVEL_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.27099609375	2	516.272021	1030.52949	-0.080851	-4.1741E-05	-0.43943	-0.00022686	-0.52028	-0.0002686	516.2717183881178	49.149	0.90163	48.967	48.667	49.569	-0.18206					52	23	4	0	0	0	0.26966	1	4901	4901		79.713	2.395	1	3489800			10153	9904	6885	6899	11710	11710					0.01544544855391905
EDTGRDDAKTK	11	Unmodified	_EDTGRDDAKTK_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.26904296875	3	412.533596	1234.57896	-0.64652	-0.00026671	-0.68532	-0.00028272	-1.3318	-0.00054943	412.53213368035847	28.194	0.20462	28.025	27.926	28.131	-0.16897					6	4	2	0	0	0	0.02473	1	1630	1630		21.032	1.0018	1	22822	+		10154	23043	6886	6900	11711	11711					-0.028947919264965094
EDTIKVNRFTF	11	Unmodified	_EDTIKVNRFTF_					0	0	0			REV__ENSG00000137462|ENST00000642700|TLR2	REV__ENSG00000137462|ENST00000642700|TLR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.7998046875	3	457.241865	1368.70376	0.18391	8.4091E-05	-0.24864	-0.00011369	-0.064733	-2.9599E-05	457.24165723221574	72.205	1.6657	71.93	71.588	73.253	-0.27509					71	39	4	0	0	0	0.024755	1	8562	8562		31.068	13.235	1	1050500	+		10155	23755	6887	6901	11712	11712					0.03416125280682536
EDTIKVNRFTF	11	Unmodified	_EDTIKVNRFTF_					0	0	0			REV__ENSG00000137462|ENST00000642700|TLR2	REV__ENSG00000137462|ENST00000642700|TLR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.799560546875	3	457.241865	1368.70376	0.27301	0.00012483	-0.62694	-0.00028666	-0.35393	-0.00016183	457.241668477105	72.167	2.0116	71.905	71.598	73.61	-0.26199					82	48	4	0	0	0	0.024726	1	8553	8553		32.034	19.601	1	1047200	+		10156	23755	6887	6901	11713	11713					0.03416125280682536
EDTIKVNRFTF	11	Unmodified	_EDTIKVNRFTF_					0	0	0			REV__ENSG00000137462|ENST00000642700|TLR2	REV__ENSG00000137462|ENST00000642700|TLR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.7993469238281	3	457.241865	1368.70376	-0.031361	-1.4339E-05	-0.057562	-2.632E-05	-0.088923	-4.0659E-05	457.24179299382257	72.029	1.248	71.823	71.497	72.745	-0.20613					68	29	5	0	0	0	0.024742	1	8526	8526		25.892	0	1	806310	+		10157	23755	6887	6901	11714	11714					0.03416125280682536
EDTILVIDP	9	Unmodified	_EDTILVIDP_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7679138183594	2	507.771322	1013.52809	-0.72118	-0.0003662	-2.8257	-0.0014348	-3.5469	-0.001801	507.7697144396876	22.927	0.48636	23.001	22.745	23.232	0.073954					18	10	2	0	0	0	0.024263	1	778	778		51.335	7.2187	1	98319			10158	5832	6888	6902	11715	11715					0.02186910766613437
EDTKKRIH	8	Unmodified	_EDTKKRIH_					0	0	0			REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7691040039062	2	513.788173	1025.56179	0.054609	2.8058E-05	-1.1056	-0.00056807	-1.051	-0.00054001	513.7875869628178	33.324	0.85445	33.381	32.956	33.81	0.056568					54	22	4	0	0	0	0.027866	1	2306	2306		47.916	7.1374	1	1046200	+		10159	21484	6889	6903	11716	11716					0.05003377049047231
EDTPEAEGEV	10	Unmodified	_EDTPEAEGEV_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2782592773438	2	538.224933	1074.43531	-0.81065	-0.00043631	3.5991	0.0019371	2.7885	0.0015008	538.2265134790616	25.23	0.26381	25.003	24.797	25.061	-0.22683					9	5	2	0	0	0	0.03519	1	1153	1153		30.318	15.654	1	36025			10160	10263	6890	6904	11717	11717					-0.0989263875742381
EDTPEAEGEV	10	Unmodified	_EDTPEAEGEV_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.224933	1074.43531	-0.51026	-0.00027464	3.7827	0.0020359	3.2724	0.0017613	538.2268466478353	24.969	0.2649	24.794	24.643	24.907	-0.17484	-0.10467	7.794E-05	NaN	30.318	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23626			10161	10263	6890	6904							-0.0989263875742381
EDTRYRQT	8	Unmodified	_EDTRYRQT_					0	0	0			REV__ENSG00000092094|ENST00000206542|OSGEP	REV__ENSG00000092094|ENST00000206542|OSGEP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.281005859375	2	534.757069	1067.49959	-1.3157	-0.00070356	1.3055	0.00069814	-0.010126	-5.4151E-06	534.7575700498884	53.887	0.58635	53.751	53.564	54.151	-0.13617					19	18	2	0	0	0	0.027866	1	5744	5744		16.473	0.83134	1	208600	+		10162	20924	6891	6905	11718	11718					-0.031463940899584486
EDTRYRQT	8	Unmodified	_EDTRYRQT_					0	0	0			REV__ENSG00000092094|ENST00000206542|OSGEP	REV__ENSG00000092094|ENST00000206542|OSGEP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.757069	1067.49959	-0.38252	-0.00020455	0.42236	0.00022586	0.039842	2.1306E-05	534.7565582359016	53.835	0.52516	53.835	53.618	54.144	0	0.049819	-9.078E-05	NaN	16.473	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614090	+		10163	20924	6891	6905							-0.031463940899584486
EDTRYRQT	8	Unmodified	_EDTRYRQT_					0	0	0			REV__ENSG00000092094|ENST00000206542|OSGEP	REV__ENSG00000092094|ENST00000206542|OSGEP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.757069	1067.49959	-0.83894	-0.00044863	0.0524	2.8021E-05	-0.78654	-0.00042061	534.7567515085811	53.647	0.45255	53.742	53.518	53.971	0.095669	-0.043035	-0.00048646	NaN	16.473	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	546400	+		10164	20924	6891	6905							-0.031463940899584486
EDTRYRQT	8	Unmodified	_EDTRYRQT_					0	0	0			REV__ENSG00000092094|ENST00000206542|OSGEP	REV__ENSG00000092094|ENST00000206542|OSGEP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.757069	1067.49959	-0.51575	-0.0002758	-0.10517	-5.6241E-05	-0.62092	-0.00033204	534.7567076218226	54.059	0.35812	53.814	53.591	53.949	-0.2453	0.028108	-0.00065498	NaN	16.473	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209870	+		10165	20924	6891	6905							-0.031463940899584486
EDTSCSTIYL	10	Unmodified	_EDTSCSTIYL_					0	0	0		nc|ENSG00000180861|Q495D7|LINC01559	nc|ENSG00000180861|Q495D7|LINC01559	nc|ENSG00000180861|Q495D7|LINC01559	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.7813110351562	2	566.247354	1130.48016	-0.64532	-0.00036541	1.0393	0.00058853	0.39403	0.00022312	566.248088909096	78.182	0.65433	78.182	77.792	78.447	0					22	15	2	0	0	0	0.03519	1	9710	9710		42.396	0	1	179430			10166	18561	6892	6906	11719	11719					-0.07986531215738069
EDTVPLSHL	9	Unmodified	_EDTVPLSHL_					0	0	0		ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-2|ETV4;nc|ENSG00000175832|P43268-3|ETV4	ENSG00000175832|ENST00000319349|ETV4	ENSG00000175832|ENST00000319349|ETV4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7611389160156	2	505.761289	1009.50803	0.072243	3.6538E-05	-2.1829	-0.001104	-2.1107	-0.0010675	505.7605255283673	106.9	0.66476	106.9	106.47	107.14	0.0018311					37	20	2	0	0	0	0.70186	1	13625	13625		45.952	1.8352	1	287360			10167	8591	6893	6907	11720	11720					0.0036515982668561264
EDTVTSKRSH	10	Unmodified	_EDTVTSKRSH_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.3031616210938	2	580.288734	1158.56291	-2.0331	-0.0011798	-3.9178	-0.0022734	-5.9509	-0.0034532	580.2865177739775	65.455	0.45095	65.241	65.012	65.463	-0.21327					18	10	2	0	0	0	0.03519	1	7446	7446		5.9211	0.36328	1	182720	+		10168	28131	6894	6908	11721	11721					-0.010024533727118978
EDTVVEKDI	9	Unmodified	_EDTVVEKDI_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.81005859375	2	524.263862	1046.51317	-1.0562	-0.00055374	3.6951	0.0019372	2.6389	0.0013835	524.7663277663288	55.798	0.58478	55.642	55.348	55.933	-0.15655					30	15	3	0	0	0	0.024495	1	6025	6025		19.997	0	1	211260	+		10169	24805	6895	6909	11722	11722					-0.008225811013744533
EDTVWAYF	8	Unmodified	_EDTVWAYF_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2716064453125	2	515.729458	1029.44436	-0.52538	-0.00027095	-3.5161	-0.0018134	-4.0415	-0.0020843	515.7274657202669	48.964	0.51014	48.684	48.501	49.011	-0.27977					32	13	3	0	0	0	0.027866	1	4927	4927		44.531	2.0566	1	421540			10170	3123	6896	6910	11723	11723					-0.06918200610448366
EDVDALMKSL	10	Unmodified	_EDVDALMKSL_					0	0	0		nc|ENSG00000132463|Q12849-5|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	nc|ENSG00000132463|Q12849-5|GRSF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.3081665039062	2	560.781364	1119.54818	-0.3534	-0.00019818	-1.6216	-0.00090937	-1.975	-0.0011075	560.780106255753	67.225	0.37158	67.001	66.899	67.271	-0.22374					12	8	2	0	0	0	0.03519	1	7768	7768		35.152	1.2304	1	162880			10171	4607	6897	6911	11724	11724					-0.006816615650677704
EDVEIDIEL	9	Unmodified	_EDVEIDIEL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3046875	2	537.763694	1073.51284	-1.5049	-0.00080928	-1.4706	-0.00079082	-2.9755	-0.0016001	537.7626735940381	85.747	0.88328	85.77	85.492	86.376	0.023666					30	20	2	0	0	0	0.02435	1	10710	10710		51.335	10.763	1	223350			10172	9860	6898	6912	11725	11725					-0.020980008212291068
EDVEIDIEL	9	Unmodified	_EDVEIDIEL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2888793945312	2	537.763694	1073.51284	-1.0128	-0.00054466	-1.4991	-0.00080619	-2.512	-0.0013508	537.7627220250979	89.73	0.5983	89.568	89.133	89.731	-0.1626					20	13	2	0	0	0	0.023817	1	10966	10966		71.296	0	1	26113			10173	9860	6898	6912	11726	11726					-0.020980008212291068
EDVENLVDL	9	Unmodified	_EDVENLVDL_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2894287109375	2	523.256037	1044.49752	1.196	0.0006258	2.4081	0.0012601	3.6041	0.0018859	523.258614226907	51.586	0.23124	51.402	51.218	51.449	-0.18405					7	5	2	0	0	0	0.023061	1	5309	5309		90.37	5.4543	1	54074	+		10174	19939	6899	6913	11727	11727					-0.02294867618434182
EDVEPYGAVLQ	11	Unmodified	_EDVEPYGAVLQ_					0	0	0		ENST00000436996.1_1_22:28318168-28318243:+|nuORF	ENST00000436996.1_1_22:28318168-28318243:+|nuORF	ENST00000436996.1_1_22:28318168-28318243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.8790283203125	3	407.199554	1218.57683	3.2712	0.001332	3.8487	0.0015672	7.1199	0.0028992	407.2008108251758	19.976	0.42993	20.042	19.735	20.165	0.066195					10	8	2	0	0	0	0.024757	1	431	431		28.577	5.1988	1	12466			10175	14288	6900	6914	11728	11728					-0.023712206642812816
EDVFDGHLL	9	Unmodified	_EDVFDGHLL_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2967529296875	2	522.753464	1043.49238	-0.32772	-0.00017132	-0.00048618	-2.5415E-07	-0.32821	-0.00017157	522.7540970365422	51.225	1.0609	51.225	50.845	51.906	0					56	29	4	0	0	0	0.024405	1	5486	5486		35.618	1.4457	1	326670			10176	3403	6901	6915	11729	11729					-0.027631266903881624
EDVFKAVQV	9	Unmodified	_EDVFKAVQV_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2741088867188	2	517.779482	1033.54441	-0.25689	-0.00013301	2.1578	0.0011172	1.9009	0.00098423	517.7808345993993	46.631	1.3817	46.631	45.548	46.93	0					70	38	3	0	0	0	0.024447	1	4442	4442		32.812	11.865	1	948820			10177	1900	6902	6916	11730	11730					0.028980367233771176
EDVFKRAAS	9	Unmodified	_EDVFKRAAS_					0	0	0			REV__ENSG00000070501|ENST00000265421|POLB	REV__ENSG00000070501|ENST00000265421|POLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7901306152344	2	511.766906	1021.51926	-0.42261	-0.00021628	1.067	0.00054604	0.64437	0.00032977	512.2689128880131	42.857	0.42859	42.62	42.489	42.917	-0.23737					16	10	2	0	0	0	0.024427	1	3922	3922		26.693	0	1	125600	+		10178	20428	6903	6917	11731	11731					0.009359819208043518
EDVFPANAL	9	Unmodified	_EDVFPANAL_					0	0	0		ENSG00000153823|ENST00000392055|PID1;nc|ENSG00000153823|Q7Z2X4-2|PID1;nc|ENSG00000153823|Q7Z2X4|PID1;nc|ENSG00000153823|Q7Z2X4-3|PID1	ENSG00000153823|ENST00000392055|PID1	ENSG00000153823|ENST00000392055|PID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2586364746094	2	488.242732	974.470912	-0.33344	-0.0001628	1.5302	0.00074709	1.1967	0.00058428	488.244236413283	41.59	0.20817	41.613	41.498	41.706	0.023006					10	5	3	0	0	0	0.023417	1	3683	3683		68.787	17.451	1	97177			10179	6361	6904	6918	11732	11732					-0.017345117191098325
EDVFWLPL	8	Unmodified	_EDVFWLPL_					0	0	0		nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;ENSG00000142330|ENST00000391984|CAPN10;nc|ENSG00000142330|Q9HC96-6|CAPN10	nc|ENSG00000142330|Q9HC96-5|CAPN10	nc|ENSG00000142330|Q9HC96-5|CAPN10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8184509277344	2	509.765843	1017.51713	-0.31554	-0.00016085	-4.0344	-0.0020566	-4.3499	-0.0022174	509.76356124983454	75.321	0.46502	75.076	74.838	75.303	-0.24455					22	11	3	0	0	0	0.027866	1	9174	9174		77.944	3.4272	1	184590			10180	5554	6905	6919	11733	11733					0.009075531830035288
EDVKKLRT	8	Unmodified	_EDVKKLRT_					0	0	0		ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000485382.2_9:69234234-69243531:-|nuORF;ENST00000487575.6_1_9:150709-154785:-|nuORF	ENSG00000172785|ENST00000356521|ZNG1A	ENSG00000172785|ENST00000356521|ZNG1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.7765808105469	2	494.792924	987.571294	-0.63397	-0.00031368	1.887	0.00093367	1.253	0.00061999	494.7932830809529	27.908	0.50109	27.662	27.42	27.921	-0.24524					30	11	4	0	0	0	0.027866	1	1601	1601		37.812	8.662	1	312540			10181	8309	6906	6920	11734	11734					0.07701145334567627
EDVLGEEYGQ	10	Unmodified	_EDVLGEEYGQ_					0	0	0			REV__ENSG00000246922|ENST00000559089|UBAP1L	REV__ENSG00000246922|ENST00000559089|UBAP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2673950195312	2	569.748576	1137.4826	0.43232	0.00024632	1.0992	0.00062627	1.5315	0.00087258	569.7490004633767	78.405	0.60034	78.174	77.963	78.563	-0.23141					28	13	3	0	0	0	0.03519	1	9402	9402		58.23	10.573	1	327590	+		10182	29005	6907	6921	11735	11735					-0.08064359486434114
EDVLIFKLY	9	Unmodified	_EDVLIFKLY_					0	0	0		GALK2|p.Q321E|1|0.15|ENSG00000156958|chr15:49292531-49292531|C/G|missense_variant	GALK2|p.Q321E|1|0.15|ENSG00000156958|chr15:49292531-49292531|C/G|missense_variant	GALK2|p.Q321E|1|0.15|ENSG00000156958|chr15:49292531-49292531|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.729736328125	2	570.320983	1138.62741	0.27586	0.00015733	-0.98938	-0.00056426	-0.71351	-0.00040693	570.3201832481764	69.508	0.49082	69.257	69.033	69.524	-0.25063					22	11	3	0	0	0	0.024405	1	8094	8094		35.618	22.807	1	154940			10183	17669	6908	6922	11736	11736					0.06364353451385796
EDVLSAAMY	9	Unmodified	_EDVLSAAMY_					0	0	0		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7166748046875	2	499.7286	997.442648	0.32312	0.00016147	-0.26582	-0.00013284	0.057303	2.8636E-05	499.72823629202577	71.396	0.65918	71.19	70.877	71.536	-0.20613					33	15	4	0	0	0	0.024354	1	8314	8314		38.806	15.764	1	476560			10184	8390	6909	6923	11737	11737					-0.056175776907025465
EDVPIKISAK	10	Unmodified	_EDVPIKISAK_					0	0	0		ENST00000504704.6_1_4:159690364-159754995:+|nuORF;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	ENST00000504704.6_1_4:159690364-159754995:+|nuORF	ENST00000504704.6_1_4:159690364-159754995:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.302734375	2	550.321514	1098.62847	1.0552	0.00058072	-2.9549	-0.0016261	-1.8996	-0.0010454	550.8203014733946	97.768	0.40479	97.644	97.327	97.732	-0.12368					12	8	2	0	0	0	0.03519	1	12075	12075		30.318	9.3708	1	79704			10185	1154	6910	6924	11738	11738					0.08310567820262804
EDVPILIP	8	Unmodified	_EDVPILIP_					0	0	0		ZNF536|p.S1141C|1|0.15|ENSG00000198597|chr19:30549041-30549041|C/G|missense_variant;ENSG00000198597|ENST00000355537|ZNF536	ZNF536|p.S1141C|1|0.15|ENSG00000198597|chr19:30549041-30549041|C/G|missense_variant	ZNF536|p.S1141C|1|0.15|ENSG00000198597|chr19:30549041-30549041|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2579345703125	2	448.260394	894.506234	-0.48408	-0.00021699	-2.2937	-0.0010282	-2.7778	-0.0012452	448.2593374436029	86.333	0.81569	86.357	86.072	86.888	0.023666					37	18	3	0	0	0	0.98906	1	10766	10766		39.021	0	1	464750			10186	10156	6911	6925	11739	11739					0.05476150808715374
EDVQFQKKD	9	Unmodified	_EDVQFQKKD_					0	0	0		ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.2298583984375	2	568.782753	1135.55095	-0.32946	-0.00018739	-0.31458	-0.00017893	-0.64404	-0.00036632	568.782485825736	38.469	0.58841	38.251	38.019	38.607	-0.21848					39	15	4	0	0	0	0.024477	1	3143	3143		20.947	0	1	834990			10187	2013	6912	6926	11740	11740					-0.011400701159118398
EDVRHTHSL	9	Unmodified	_EDVRHTHSL_					0	0	0			REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF	REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.8137817382812	2	547.272887	1092.53122	-0.76238	-0.00041723	-0.038498	-2.1069E-05	-0.80088	-0.0004383	547.7773075150386	56.63	0.86919	56.63	56.241	57.111	0					48	24	3	0	0	0	0.024477	1	6328	6328		35.618	0	1	520390	+		10188	34787	6913	6927	11741	11741					-0.011344013360030658
EDVTRRRR	8	Unmodified	_EDVTRRRR_					0	0	0			REV__ENSG00000170653|ENST00000420353|ATF7	REV__ENSG00000170653|ENST00000420353|ATF7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.24755859375	2	544.307595	1086.60064	-0.88374	-0.00048103	-3.1458	-0.0017123	-4.0295	-0.0021933	544.3060210092491	52.173	0.37069	52.054	51.833	52.203	-0.11875					17	9	2	0	0	0	0.027866	1	5429	5429		18.324	0	1	181800	+		10189	26492	6914	6928	11742	11742					0.06080102403393539
EDVTVDYSDV	10	Unmodified	_EDVTVDYSDV_					0	0	0			REV__nc|ENSG00000012779|P09917-5|ALOX5	REV__nc|ENSG00000012779|P09917-5|ALOX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.3314208984375	2	571.248408	1140.48226	1.1458	0.00065455	3.1193	0.0017819	4.2651	0.0024364	571.2498379859445	63.751	0.39282	63.801	63.657	64.049	0.049114					17	10	2	0	0	0	0.03519	1	7423	7423		32.812	0	1	114000	+		10190	19946	6915	6929	11743	11743					-0.08235779206279403
EDVTVELIQ	9	Unmodified	_EDVTVELIQ_					0	0	0		ENST00000570977.1_1_17:52992089-53007568:+|nuORF;nc|ENSG00000141198|O75674-2|TOM1L1;nc|ENSG00000141198|O75674-3|TOM1L1;ENSG00000141198|ENST00000575882|TOM1L1	ENST00000570977.1_1_17:52992089-53007568:+|nuORF	ENST00000570977.1_1_17:52992089-53007568:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2964477539062	2	523.274229	1044.53391	-0.42115	-0.00022038	1.9249	0.0010072	1.5037	0.00078685	523.7774012209381	51.584	0.099525	51.584	51.501	51.6	0					4	2	2	0	0	0	0.024319	1	5464	5464		56.721	14.325	1	110820			10191	5475	6916	6930	11744	11744					0.013420092782780557
EDVVKSKKT	9	Unmodified	_EDVVKSKKT_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.313720703125	2	517.298039	1032.58152	-0.094234	-4.8747E-05	1.097	0.00056746	1.0027	0.00051871	517.2988066521515	97.27	0.8983	97.109	96.862	97.76	-0.16105					24	19	2	0	0	0	0.024511	1	12102	12102		13.454	0	1	46686			10192	8321	6917	6931	11745	11745					0.06653708269141134
EDVVLKLFL	9	Unmodified	_EDVVLKLFL_					0	0	0		ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3046875	2	538.323525	1074.6325	-1.5521	-0.00083555	0.62835	0.00033826	-0.92378	-0.00049729	538.323611522634	85.792	0.33204	85.815	85.697	86.029	0.023666					11	7	2	0	0	0	0.023817	1	10710	10710		82.305	39.831	1	54903			10193	2772	6918	6932	11746	11746					0.09816657313990618
EDVVRFRI	8	Unmodified	_EDVVRFRI_					0	0	0			REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF	REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2915649414062	2	517.293091	1032.57163	0.8722	0.00045118	-1.3582	-0.00070261	-0.48604	-0.00025142	517.2921583229506	54.803	0.54556	54.597	54.395	54.941	-0.20613					35	14	4	0	0	0	0.77775	1	5821	5821		60.972	0.67798	1	2275300	+		10194	21113	6919	6933	11747	11747					0.05664565054416926
EDVVRLLQL	9	Unmodified	_EDVVRLLQL_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7763061523438	2	542.821681	1083.62881	-0.4118	-0.00022354	0.26756	0.00014524	-0.14424	-7.8299E-05	542.8219288108414	67.955	0.48915	67.974	67.669	68.158	0.018913					23	12	2	0	0	0	0.015636	1	8034	8034		125.81	14.166	1	747210			10195	9091	6920	6934	11748	11748					0.09033987540146882
EDVVVIKV	8	Unmodified	_EDVVVIKV_					0	0	0			REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.2474670410156	2	450.773668	899.532783	-0.042571	-1.919E-05	0.9533	0.00042972	0.91073	0.00041053	450.7741426700505	39.563	0.49548	39.398	39.081	39.576	-0.16458					15	12	2	0	0	0	0.027866	1	3374	3374		60.972	9.6365	1	169380	+		10196	22393	6921	6935	11749	11749					0.07899839700041866
EDVWQCWW	8	Unmodified	_EDVWQCWW_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;ENSG00000197177|ENST00000392607|ADGRA1;nc|ENSG00000197177|Q86SQ6-2|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.7864379882812	2	576.234384	1150.45422	1.2442	0.00071693	2.5017	0.0014416	3.7459	0.0021585	576.2356193383112	63.603	0.71441	63.657	63.233	63.947	0.054104					38	19	3	0	0	0	0.027866	1	7321	7321		31.955	2.1133	1	242680			10197	9969	6922	6936	11750	11750					-0.11499335876692385
EDWECFRA	8	Unmodified	_EDWECFRA_					0	0	0		ENSG00000077080|ENST00000160382|ACTL6B	ENSG00000077080|ENST00000160382|ACTL6B	ENSG00000077080|ENST00000160382|ACTL6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2388305664062	2	528.216192	1054.41783	1.2109	0.00063963	0.12467	6.5853E-05	1.3356	0.00070549	528.2159958256187	63.127	0.32207	63.181	63.016	63.338	0.054104					12	8	2	0	0	0	0.027866	1	7314	7314		17.365	0	1	297060			10198	1597	6923	6937	11751	11751					-0.1072021277341264
EDWGTLYIN	9	Unmodified	_EDWGTLYIN_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.290771484375	2	555.758746	1109.50294	-0.99218	-0.00055141	0.5162	0.00028688	-0.47598	-0.00026453	555.7581514623885	61.026	0.23365	60.772	60.697	60.931	-0.25373					6	5	2	0	0	0	0.024436	1	6793	6793		23.042	5.6775	1	68673	+		10199	25847	6924	6938	11752	11752					-0.047431440359332555
EDWISTRF	8	Unmodified	_EDWISTRF_					0	0	0			REV__ENSG00000155876|ENST00000380527|RRAGA	REV__ENSG00000155876|ENST00000380527|RRAGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7500610351562	2	527.253631	1052.49271	-1.0007	-0.00052764	1.2432	0.00065547	0.24244	0.00012783	527.2524060602495	44.398	0.45463	44.179	43.864	44.319	-0.21938					17	12	2	0	0	0	0.027866	1	4084	4084		19.36	0	1	258350	+		10200	20721	6925	6939	11753	11753					-0.031437069705361864
EDWITQNN	8	Unmodified	_EDWITQNN_					0	0	0			REV__ENSG00000092850|ENST00000207457|TEKT2	REV__ENSG00000092850|ENST00000207457|TEKT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2739562988281	2	510.225071	1018.43559	-0.8124	-0.00041451	-2.3071	-0.0011772	-3.1195	-0.0015917	510.2237733480405	90.405	0.53484	90.28	90.01	90.544	-0.12512					18	12	2	0	0	0	0.027866	1	11104	11104		25.45	0	1	89700	+		10201	20939	6926	6940	11754	11754					-0.07289174246909624
EDWNEVMY	8	Unmodified	_EDWNEVMY_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.829345703125	2	543.215857	1084.41716	-0.77929	-0.00042332	3.8816	0.0021085	3.1023	0.0016852	543.2177550576738	54.974	0.42385	54.824	54.641	55.065	-0.15036					25	11	3	0	0	0	0.027866	1	5999	5999		25.45	0	1	330260			10202	202	6927	6941	11755	11755					-0.12167052213112584
EDWVVLVK	8	Unmodified	_EDWVVLVK_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.31512451171875	2	494.279118	986.543683	-0.21557	-0.00010655	4.4499	0.0021995	4.2343	0.0020929	494.2811167573913	80.839	0.4711	80.839	80.667	81.138	0					25	11	3	0	0	0	0.027866	1	10041	10041		55.504	36.144	1	150770	+		10203	20794	6928	6942	11756	11756					0.049872420743326984
EDYAQKSIW	9	Unmodified	_EDYAQKSIW_					0	0	0			REV__ENST00000441772.1_1_11:1824121-1824694:-|nuORF	REV__ENST00000441772.1_1_11:1824121-1824694:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2933959960938	2	570.272021	1138.52949	-0.59666	-0.00034026	-4.4014	-0.00251	-4.9981	-0.0028503	570.2708623344975	45.138	0.50002	45.038	44.789	45.289	-0.099445					27	13	3	0	0	0	0.024477	1	4248	4248		27.882	0	1	213650	+		10204	32550	6929	6943	11757	11757					-0.03423455144616128
EDYEQIVD	8	Unmodified	_EDYEQIVD_					0	0	0			REV__ENST00000492706.5_1_X:54951111-54953173:+|nuORF	REV__ENST00000492706.5_1_X:54951111-54953173:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2587890625	2	505.719287	1009.42402	0.062879	3.1799E-05	-2.634	-0.0013321	-2.5711	-0.0013003	505.7176847340692	41.435	0.59618	41.458	41.147	41.743	0.023006					25	16	2	0	0	0	0.027866	1	3625	3625		29.15	10.825	1	237600	+		10205	20361	6930	6944	11758	11758					-0.0803141606089639
EDYEQIVD	8	Unmodified	_EDYEQIVD_					0	0	0			REV__ENST00000492706.5_1_X:54951111-54953173:+|nuORF	REV__ENST00000492706.5_1_X:54951111-54953173:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.719287	1009.42402	-0.1326	-6.706E-05	-2.8125	-0.0014223	-2.9451	-0.0014894	505.71772374985034	41.488	0.6742	41.365	41.051	41.725	-0.12317	-0.020616	1.3595E-05	NaN	21.96	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245490	+		10206	20361	6930	6944							-0.0803141606089639
EDYFGQYTLVQ	11	Unmodified	_EDYFGQYTLVQ_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7582092285156	3	454.878592	1361.61395	-0.19451	-8.8478E-05	0.50642	0.00023036	0.31191	0.00014188	454.87857475060014	46.943	0.52129	47.002	46.693	47.214	0.059097					24	13	3	0	0	0	0.02473	1	4632	4632		21.032	0	1	363490	+		10207	27924	6931	6945	11759	11759					-0.05239549118505238
EDYGVSITTL	10	Unmodified	_EDYGVSITTL_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2618408203125	2	549.271687	1096.52882	-0.81977	-0.00045027	1.2947	0.00071115	0.47495	0.00026088	549.271570044881	91.207	0.33028	91.194	91.075	91.405	-0.012383					10	7	2	0	0	0	0.03519	1	11541	11541		25.574	0	1	72351			10208	6394	6932	6946	11760	11760					-0.015582945843334528
EDYIFKAVM	9	Unmodified	_EDYIFKAVM_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.7984008789062	2	558.275718	1114.53688	0.4351	0.0002429	1.248	0.00069671	1.6831	0.00093961	558.2764237077596	82.458	0.56592	82.238	82	82.565	-0.22015					16	12	2	0	0	0	0.024506	1	9893	9893		30.504	0	1	85259			10209	1886	6933	6947	11761	11761					-0.01580438868541023
EDYIFKAVM	9	Unmodified	_EDYIFKAVM_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.275718	1114.53688	-0.25168	-0.00014051	2.974	0.0016603	2.7223	0.0015198	558.2770829402236	82.327	0.54716	82.327	82.031	82.579	0	0.021727	0.0006493	NaN	29.15	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54306			10210	1886	6933	6947							-0.01580438868541023
EDYIFKAVM	9	Unmodified	_EDYIFKAVM_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.275718	1114.53688	1.2053	0.00067287	2.0937	0.0011689	3.299	0.0018417	558.2765488114117	82.456	0.55545	82.346	82.126	82.682	-0.11006	0.040611	-0.0003336	NaN	29.15	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56694			10211	1886	6933	6947							-0.01580438868541023
EDYIFKAVM	9	Unmodified	_EDYIFKAVM_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.275718	1114.53688	-0.21822	-0.00012183	4.3693	0.0024393	4.1511	0.0023174	558.2770831342455	82.355	0.5527	82.381	82.106	82.658	0.025711	0.075055	0.0022072	NaN	29.15	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57163			10212	1886	6933	6947							-0.01580438868541023
EDYIFKAVM	9	Unmodified	_EDYIFKAVM_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.275718	1114.53688	-0.89973	-0.0005023	2.5947	0.0014486	1.695	0.00094627	558.2773445602636	82.376	0.39153	82.236	82.043	82.434	-0.14014	-0.070022	0.00022579	NaN	29.15	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76404			10213	1886	6933	6947							-0.01580438868541023
EDYIKLIGF	9	Unmodified	_EDYIKLIGF_					0	0	0		CASQ2|p.R160C|1|0.35|ENSG00000118729|chr1:115738278-115738278|G/A|missense_variant;CASQ2|p.R160P|1|0.35|ENSG00000118729|chr1:115738277-115738277|C/G|missense_variant;ENSG00000118729|ENST00000261448|CASQ2	CASQ2|p.R160C|1|0.35|ENSG00000118729|chr1:115738278-115738278|G/A|missense_variant	CASQ2|p.R160C|1|0.35|ENSG00000118729|chr1:115738278-115738278|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2617797851562	2	549.297507	1096.58046	-1.5801	-0.00086794	0.80582	0.00044264	-0.77426	-0.0004253	549.2977691089441	91.016	0.83368	91.016	90.678	91.511	0					34	19	2	0	0	0	0.024294	1	11570	11570		37.159	0	1	426350			10214	220	6934	6948	11762	11762					0.03603493900254762
EDYIKLIGF	9	Unmodified	_EDYIKLIGF_					0	0	0		CASQ2|p.R160C|1|0.35|ENSG00000118729|chr1:115738278-115738278|G/A|missense_variant;CASQ2|p.R160P|1|0.35|ENSG00000118729|chr1:115738277-115738277|C/G|missense_variant;ENSG00000118729|ENST00000261448|CASQ2	CASQ2|p.R160C|1|0.35|ENSG00000118729|chr1:115738278-115738278|G/A|missense_variant	CASQ2|p.R160C|1|0.35|ENSG00000118729|chr1:115738278-115738278|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2618408203125	2	549.297507	1096.58046	-0.78795	-0.00043282	-0.21011	-0.00011541	-0.99806	-0.00054823	549.2974870436014	91.046	0.78908	91.033	90.744	91.533	-0.012383					40	18	3	0	0	0	0.024354	1	11541	11541		23.042	0	1	295910			10215	220	6934	6948	11763	11763					0.03603493900254762
EDYIRDWT	8	Unmodified	_EDYIRDWT_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000154608|Q96L14|CEP170P1;nc|ENSG00000143702|Q5SW79-2|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2644653320312	2	549.248546	1096.48254	-0.34984	-0.00019215	2.0101	0.001104	1.6602	0.00091187	549.2497152634045	46.133	0.457	45.872	45.666	46.123	-0.26118					21	11	2	0	0	0	0.027866	1	4425	4425		60.972	28.16	1	335080			10216	5680	6935	6949	11764	11764					-0.06184314695747162
EDYKLEQI	8	Unmodified	_EDYKLEQI_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8226318359375	2	519.261122	1036.50769	-0.86963	-0.00045156	3.557	0.001847	2.6874	0.0013955	519.2623279127977	81.119	1.0848	81.119	80.626	81.711	0					46	26	2	0	0	0	0.027866	1	10148	10148		64.207	2.0999	1	630260	+		10217	24642	6936	6950	11765	11765					-0.00910259893203147
EDYKLHFI	8	Unmodified	_EDYKLHFI_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;ENSG00000153132|ENST00000325617|CLGN	nc|ENSG00000127022|P27824-3|CANX;ENSG00000153132|ENST00000325617|CLGN	nc|ENSG00000127022|P27824-3|CANX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.3402099609375	2	532.7742	1063.53385	-0.53501	-0.00028504	-1.333	-0.00071021	-1.8681	-0.00099525	532.7740764023328	97.884	0.94305	97.884	97.415	98.358	0					72	21	5	0	0	0	0.027866	1	12483	12483		55.504	6.0627	1	411130			10218	4224;6322	6937	6951	11766	11766					0.004620540689529662
EDYLFQKNF	9	Unmodified	_EDYLFQKNF_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	601.8312377929688	2	602.287671	1202.56079	-0.54479	-0.00032812	3.0429	0.0018327	2.4981	0.0015046	602.2893019011013	72.924	0.84575	72.647	72.368	73.214	-0.2769					30	19	2	0	0	0	0.024307	1	8520	8520		39.253	16.21	1	120370	+		10219	29177	6938	6952	11767	11767					-0.03238882110508712
EDYLFQKNF	9	Unmodified	_EDYLFQKNF_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	602.287671	1202.56079	-0.6596	-0.00039727	2.9412	0.0017715	2.2816	0.0013742	602.2893114647014	73.204	0.75037	72.94	72.428	73.178	-0.26479	0.22966	-0.00012198	NaN	39.253	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199460	+		10220	29177	6938	6952							-0.03238882110508712
EDYLFQKNF	9	Unmodified	_EDYLFQKNF_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	602.287671	1202.56079	-0.59088	-0.00035588	3.1382	0.0018901	2.5473	0.0015342	602.2893983143425	72.741	0.71004	72.543	72.289	72.999	-0.19811	-0.16712	0.00011522	NaN	39.253	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155130	+		10221	29177	6938	6952							-0.03238882110508712
EDYNLIVI	8	Unmodified	_EDYNLIVI_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;nc|ENSG00000130726|Q13263-2|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2684326171875	2	489.760758	977.506963	0.12465	6.1048E-05	-4.196	-0.002055	-4.0713	-0.001994	489.7591176731969	41.819	0.37151	41.588	41.354	41.725	-0.2303					13	9	2	0	0	0	0.027866	1	3682	3682		71.296	0	1	99830			10222	4447	6939	6953	11768	11768					0.01730945457757116
EDYSAAEPLN	10	Unmodified	_EDYSAAEPLN_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.2989501953125	2	554.743293	1107.47203	-0.29479	-0.00016353	0.83689	0.00046426	0.5421	0.00030073	554.7435049044204	78.305	0.70104	78.321	78.031	78.732	0.015907					29	16	3	0	0	0	0.03519	1	9613	9613		34.173	0	1	211450	+		10223	20383	6940	6954	11769	11769					-0.07740342140846224
EDYYVRLEA	9	Unmodified	_EDYYVRLEA_					0	0	0			REV__ENSG00000145087|ENST00000471454|STXBP5L	REV__ENSG00000145087|ENST00000471454|STXBP5L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.3031616210938	2	579.277303	1156.54005	-1.9347	-0.0011207	1.1271	0.00065291	-0.80762	-0.00046783	579.2781938896125	65.408	0.49213	65.195	64.971	65.463	-0.21327					17	11	2	0	0	0	0.024541	1	7446	7446		3.41	0	1	132190	+		10224	24382	6941	6955	11770	11770					-0.03195472490187967
EEAAKLKVNI	10	Unmodified	_EEAAKLKVNI_					0	0	0			REV__MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant	REV__MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.801025390625	2	557.826963	1113.63937	0.5633	0.00031422	2.9186	0.0016281	3.4819	0.0019423	557.8282564658751	86.85	0.50842	86.708	86.495	87.003	-0.14218					20	11	2	0	0	0	0.03519	1	10561	10561		52.937	0	1	130200	+		10225	21144	6942	6956	11771	11771					0.08709970194558991
EEAETRNFK	9	Unmodified	_EEAETRNFK_					0	0	0		ENST00000295872.8_1_3:113218316-113218349:-|nuORF	ENST00000295872.8_1_3:113218316-113218349:-|nuORF	ENST00000295872.8_1_3:113218316-113218349:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2763671875	2	562.272552	1122.53055	0.094396	5.3076E-05	0.1428	8.0294E-05	0.2372	0.00013337	562.2724324930124	23.924	0.56954	23.709	23.384	23.954	-0.2151					23	12	2	0	0	0	0.56934	1	1004	1004		54.776	1.4249	1	590900			10226	11831	6943	6957	11772	11772					-0.025812407757030087
EEALGGEAR	9	Unmodified	_EEALGGEAR_					0	0	0			REV__ENST00000249601.8_1_10:49791013-49812893:-|nuORF	REV__ENST00000249601.8_1_10:49791013-49812893:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.7797546386719	2	466.227613	930.440674	0.40346	0.0001881	1.0525	0.00049072	1.456	0.00067883	466.2278426473346	19.383	0.88871	19.222	18.935	19.823	-0.16079					24	17	2	0	0	0	0.024025	1	394	394		52.937	12.364	1	35609	+		10227	29491	6944	6958	11773	11773					-0.027328703842840696
EEANRQVW	8	Unmodified	_EEANRQVW_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.297119140625	2	516.24888	1030.48321	-0.43293	-0.0002235	0.68354	0.00035288	0.25062	0.00012938	516.2491401940513	36.95	0.8267	36.731	36.365	37.192	-0.2195					44	20	3	0	0	0	0.027866	1	2905	2905		85.359	24.388	1	1050700	+		10228	27189	6945	6959	11774	11774					-0.030814752560445413
EEARAGPYPY	10	Unmodified	_EEARAGPYPY_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.3275146484375	2	576.769645	1151.52474	-0.10006	-5.7711E-05	-3.7987	-0.002191	-3.8988	-0.0022487	576.7672287213621	37.718	0.46086	37.538	37.203	37.664	-0.18023					14	11	2	0	0	0	0.03519	1	3037	3037		32.812	2.4947	1	115760	+		10229	28588	6946	6960	11775	11775					-0.04496339287379669
EEAVDLALQ	9	Unmodified	_EEAVDLALQ_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2894592285156	2	494.253297	986.492041	0.56563	0.00027957	4.0381	0.0019959	4.6038	0.0022754	494.2547164259884	61.422	0.42099	61.422	61.108	61.529	0					20	10	3	0	0	0	0.024397	1	7081	7081		39.253	0	1	305240			10230	2547	6947	6961	11776	11776					-0.001745464102555161
EECPTQEIEW	10	Unmodified	_EECPTQEIEW_					0	0	0			REV__nc|ENSG00000144736|Q6PI26-2|SHQ1	REV__nc|ENSG00000144736|Q6PI26-2|SHQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	632.26611328125	2	632.263536	1262.51252	-0.72111	-0.00045593	3.9944	0.0025255	3.2733	0.0020696	632.2663625760867	33.282	0.98215	33.082	32.813	33.795	-0.20019					88	24	6	0	0	0	0.78327	1	2376	2376		58.23	24.308	1	4163200	+		10231	24356	6948	6962	11777	11777					-0.1082374381273894
EECPTQEIEW	10	Carbamidomethyl (C)	_EEC(Carbamidomethyl (C))PTQEIEW_	EEC(1)PTQEIEW		EEC(48)PTQEIEW		0	1	0			REV__nc|ENSG00000144736|Q6PI26-2|SHQ1	REV__nc|ENSG00000144736|Q6PI26-2|SHQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.8536682128906	3	440.851937	1319.53398	-0.037581	-1.6567E-05	3.5969	0.0015857	3.5593	0.0015691	440.8534410776844	31.711	2.4532	31.558	31.232	33.685	-0.15283					142	60	4	0	0	0	0.98527	1	2117	2117		47.96	8.0864	1	2753900	+		10232	24356	6948	6963	11778	11778	320				-0.11300358784023956
EEDDIALQI	9	Unmodified	_EEDDIALQI_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2476862-2477408:+|nuORF	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2971801757812	2	523.256037	1044.49752	-0.67194	-0.0003516	-1.1208	-0.00058649	-1.7928	-0.00093809	523.7544714492285	51.482	1.1497	51.335	50.627	51.777	-0.14735					55	32	3	0	0	0	0.024263	1	5498	5498		71.296	7.9894	1	231780			10233	2091	6949	6964	11779	11779					-0.02294867618434182
EEDDSENEPII	11	Unmodified	_EEDDSENEPII_					0	0	0			REV__ENSG00000268043|ENST00000698835|NBPF12;REV__nc|ENSG00000269713|P0DPF3-2|NBPF9;REV__nc|ENSG00000219481|Q3BBV0|NBPF1	REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.88604736328125	3	430.5175	1288.53067	-0.70571	-0.00030382	-0.18177	-7.8255E-05	-0.88748	-0.00038207	430.5173776742158	21.56	0.67186	21.56	21.293	21.965	0					22	13	2	0	0	0	0.024789	1	720	720		26.75	8.2187	1	53540	+		10234	29130;29159;37133	6950	6965	11780	11780					-0.10205330357030107
EEDEDDDEGPY	11	Unmodified	_EEDEDDDEGPY_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.14825439453125	3	438.149365	1311.42627	-0.27503	-0.0001205	-2.6211	-0.0011484	-2.8962	-0.0012689	438.14865691279834	43.201	0.73482	42.975	42.714	43.449	-0.22597					76	19	6	0	0	0	1.0712	1	3943	3943		19.263	2.7328	1	5343900			10235	9404	6951	6966	11781	11781					-0.21699076904405956
EEDEEEEATAD	11	Unmodified	_EEDEEEEATAD_					0	0	0			REV__ENSG00000261456|ENST00000568584|TUBB8	REV__ENSG00000261456|ENST00000568584|TUBB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.7293701171875	2	633.728234	1265.44192	-0.64817	-0.00041076	2.0167	0.001278	1.3685	0.00086728	633.7296508279001	28.872	1.2646	28.722	28.403	29.668	-0.14952					77	29	5	0	0	0	0.93615	1	1691	1691		49.442	1.7842	1	2792000	+		10236	29113	6952	6967	11782	11782					-0.18018790387372974
EEDEELLASV	10	Unmodified	_EEDEELLASV_					0	0	0			REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.829345703125	2	567.264059	1132.51356	-0.95476	-0.0005416	-3.2017	-0.0018162	-4.1565	-0.0023578	567.2631222643007	65.041	0.28412	64.839	64.697	64.982	-0.20254					9	6	2	0	0	0	0.03519	1	7429	7429		47.657	0	1	163460	+		10237	34183	6953	6968	11783	11783					-0.04739206172212107
EEDEELLASV	10	Unmodified	_EEDEELLASV_					0	0	0			REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.264059	1132.51356	-1.0304	-0.00058449	-1.5518	-0.00088027	-2.5821	-0.0014648	567.2629246613147	64.656	0.56003	64.656	64.384	64.944	0	-0.0461	-0.00026709	NaN	113.41	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412080	+		10238	34183	6953	6968							-0.04739206172212107
EEDEELLASV	10	Unmodified	_EEDEELLASV_					0	0	0			REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	567.264059	1132.51356	-1.4714	-0.00083466	-0.88793	-0.00050369	-2.3593	-0.0013383	567.2632620872685	64.915	0.57241	64.652	64.417	64.989	-0.2626	-0.050017	0.00048607	NaN	113.41	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440270	+		10239	34183	6953	6968							-0.04739206172212107
EEDEELLASV	10	Unmodified	_EEDEELLASV_					0	0	0			REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	REV__ENST00000514799.1_1_5:59755891-59756539:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	567.264059	1132.51356	-1.1719	-0.00066477	-1.3791	-0.00078231	-2.551	-0.0014471	567.2630597014817	64.616	0.56461	64.662	64.411	64.975	0.045502	-0.040277	-7.1178E-05	NaN	113.41	39	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463140	+		10240	34183	6953	6968							-0.04739206172212107
EEDLETNKLD	10	Unmodified	_EEDLETNKLD_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5364685058594	3	402.522585	1204.54593	1.2949	0.00052124	0.30989	0.00012474	1.6048	0.00064597	402.52297282760117	32.768	0.199	32.575	32.417	32.616	-0.19261					8	4	2	0	0	0	0.03519	1	2284	2284		33.039	3.4886	1	19416			10241	10313	6954	6969	11784	11784					-0.04816418769178199
EEDNVLFFW	9	Unmodified	_EEDNVLFFW_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.2036437988281	3	400.185356	1197.53424	0.12121	4.8506E-05	-4.3389	-0.0017364	-4.2177	-0.0016879	400.18430906228343	25.769	0.29252	25.542	25.352	25.645	-0.22683					9	6	2	0	0	0	0.024292	1	1249	1249		40.778	0	1	21260	+		10242	25129	6955	6970	11785	11785					-0.05662571001857941
EEDQQGII	8	Unmodified	_EEDQQGII_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.32891845703125	2	466.221997	930.429441	3.506	0.0016346	0.15192	7.0829E-05	3.6579	0.0017054	466.2219236647555	18.078	0.2971	17.835	17.677	17.974	-0.24256					8	5	2	0	0	0	0.027866	1	245	245		42.474	0	1	11497			10243	8590	6956	6971	11786	11786					-0.03855692478407491
EEDQQGII	8	Unmodified	_EEDQQGII_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.221997	930.429441	1.0935	0.00050981	3.4149	0.0015921	4.5084	0.0021019	466.22334518853717	18.024	0.24644	17.868	17.755	18.002	-0.15637	0.01629	0.0021453	NaN	25.45	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7907.7			10244	8590	6956	6971							-0.03855692478407491
EEDSSNINI	9	Unmodified	_EEDSSNINI_					0	0	0			REV__ENSG00000141456|ENST00000572293|PELP1	REV__ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7821960449219	2	510.727643	1019.44073	-0.65493	-0.00033449	1.9582	0.0010001	1.3033	0.00066563	510.72846590391083	55.162	0.45949	55.016	54.761	55.221	-0.14609					21	12	2	0	0	0	0.024477	1	5868	5868		35.618	12.576	1	341080	+		10245	24091	6957	6972	11787	11787					-0.06820915174944275
EEDSSNINI	9	Unmodified	_EEDSSNINI_					0	0	0			REV__ENSG00000141456|ENST00000572293|PELP1	REV__ENSG00000141456|ENST00000572293|PELP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.727643	1019.44073	-0.16559	-8.4571E-05	1.3405	0.00068463	1.1749	0.00060006	510.7281969646415	55.282	0.51635	55.076	54.866	55.383	-0.20613	0.082748	0.00032027	NaN	44.117	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353670	+		10246	24091	6957	6972							-0.06820915174944275
EEEAVFGADVL	11	Unmodified	_EEEAVFGADVL_					0	0	0		nc|ENSG00000104059|O60320-2|ENTREP2;ENSG00000104059|ENST00000261275|ENTREP2	nc|ENSG00000104059|O60320-2|ENTREP2	nc|ENSG00000104059|O60320-2|ENTREP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.7504272460938	2	589.782418	1177.55028	-0.75778	-0.00044692	-3.6956	-0.0021796	-4.4533	-0.0026265	589.7801654953239	60.507	0.28561	60.301	60.05	60.336	-0.20599					9	6	2	0	0	0	0.024768	1	6737	6737		56.721	12.604	1	155050			10247	2542	6958	6973	11788	11788					-0.03138909555605096
EEECALLRRA	10	Unmodified	_EEECALLRRA_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.3036499023438	2	595.303329	1188.59211	-1.1504	-0.00068484	0.88578	0.00052731	-0.26463	-0.00015753	595.3038484745545	41.215	1.0638	40.985	40.733	41.797	-0.23029					71	27	4	0	0	0	0.85955	1	3601	3601		56.721	3.7844	1	5891700			10248	2126	6959	6974	11789	11789					0.005353676519462169
EEEDLEGKEEG	11	Unmodified	_EEEDLEGKEEG_					0	0	0		ENSG00000187994|ENST00000591812|RINL;ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL	ENSG00000187994|ENST00000591812|RINL	ENSG00000187994|ENST00000591812|RINL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.8467712402344	3	421.845617	1262.51502	-0.45655	-0.00019259	1.4693	0.00061983	1.0128	0.00042723	421.84659378502005	33.136	2.2943	32.971	32.638	34.932	-0.16565					178	57	7	0	0	0	1.0074	1	2325	2325		35.178	4.6094	1	13050000			10249	9680	6960	6975	11790	11790					-0.10573616874057734
EEEEDAGCRDL	11	Unmodified	_EEEEDAGCRDL_					0	0	0		nc|ENSG00000159784|Q86XD5|FAM131B;ENST00000410085.5_1_7:143053645-143056840:-|nuORF;nc|ENSG00000159784|Q86XD5-2|FAM131B;ENSG00000159784|ENST00000443739|FAM131B	nc|ENSG00000159784|Q86XD5|FAM131B	nc|ENSG00000159784|Q86XD5|FAM131B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5133972167969	3	422.503197	1264.48776	-0.37872	-0.00016001	-1.848	-0.0007808	-2.2267	-0.00094081	422.50289891712424	31.871	0.27987	31.883	31.663	31.943	0.011797					12	6	3	0	0	0	0.024723	1	2137	2137		22.562	6.5548	1	164360			10250	6768	6961	6976	11791	11791					-0.13390423686132635
EEEEEEESH	9	Unmodified	_EEEEEEESH_					0	0	0			REV__ENSG00000130528|ENST00000252825|HRC	REV__ENSG00000130528|ENST00000252825|HRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7515869140625	2	573.707105	1145.39966	-0.79174	-0.00045422	-2.9223	-0.0016765	-3.714	-0.0021308	573.7057627335739	30.442	0.20213	30.264	30.164	30.366	-0.17818					6	4	2	0	0	0	0.024436	1	1929	1929		30.504	0	1	29498	+		10251	23121	6962	6977	11792	11792					-0.16722721005066887
EEEEEGWTF	9	Unmodified	_EEEEEGWTF_					0	0	0		ENST00000360472.8_1_1:160183272-160183497:+|nuORF	ENST00000360472.8_1_1:160183272-160183497:+|nuORF	ENST00000360472.8_1_1:160183272-160183497:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7593383789062	2	578.227476	1154.4404	-0.45209	-0.00026141	1.2413	0.00071775	0.7892	0.00045634	578.2277950286361	50.278	0.45609	49.998	49.802	50.258	-0.27977					23	11	3	0	0	0	0.024487	1	5094	5094		40.573	15.122	1	157600			10252	12768	6963	6978	11793	11793					-0.13064334894806962
EEEEELLCR	9	Unmodified	_EEEEELLCR_					0	0	0			REV__POP5|p.S145R|1|0.09|ENSG00000167272|chr12:120579375-120579375|G/T|missense_variant	REV__POP5|p.S145R|1|0.09|ENSG00000167272|chr12:120579375-120579375|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.2409057617188	2	575.258253	1148.50195	0.15454	8.8901E-05	0.97171	0.00055898	1.1262	0.00064788	575.2585446558749	68.412	0.47901	68.169	67.951	68.43	-0.24277					25	11	3	0	0	0	0.024389	1	7947	7947		42.864	5.8358	1	171030	+		10253	37391	6964	6979	11794	11794					-0.06635726467152381
EEEFIHLL	8	Unmodified	_EEEFIHLL_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2291259765625	2	515.266207	1028.51786	-0.23158	-0.00011933	-3.6196	-0.001865	-3.8512	-0.0019844	515.2641684446189	62.304	0.50723	62.046	61.743	62.25	-0.25824					29	12	3	0	0	0	0.027866	1	6972	6972		26.796	0	1	911010			10254	18160	6965	6980	11795	11795					0.004743478320506256
EEEIHAEEST	10	Unmodified	_EEEIHAEEST_					0	0	0		ENSG00000152763|ENST00000371026|DNAI4;nc|ENSG00000152763|Q5VTH9-2|DNAI4;nc|ENSG00000152763|Q5VTH9-3|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.290771484375	2	587.24894	1172.48333	-0.59711	-0.00035065	-3.528	-0.0020718	-4.1251	-0.0024225	587.2462331716106	52.85	0.59142	52.66	52.389	52.981	-0.18982					32	14	3	0	0	0	0.03519	1	5497	5497		20.947	14.211	1	391200			10255	6296	6966	6981	11796	11796					-0.09601564837385013
EEEKSPIKV	9	Unmodified	_EEEKSPIKV_					0	0	0			REV__ENSG00000159166|ENST00000391967|LAD1	REV__ENSG00000159166|ENST00000391967|LAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7852783203125	2	529.790047	1057.56554	-0.88572	-0.00046925	-4.2216	-0.0022366	-5.1073	-0.0027058	529.7877019797392	53.186	0.5031	53.186	52.901	53.404	0					22	13	2	0	0	0	0.023635	1	5703	5703		56.721	1.9447	1	253580	+		10256	25238	6967	6982	11797	11797					0.03906002032226752
EEELELLP	8	Unmodified	_EEELELLP_					0	0	0			REV__ENST00000584811.5_1_17:15466416-15466713:-|nuORF	REV__ENST00000584811.5_1_17:15466416-15466713:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.25030517578125	2	486.250223	970.485893	0.028123	1.3675E-05	0.69714	0.00033898	0.72526	0.00035266	486.2503784084237	33.3	0.94215	33.356	33.07	34.012	0.056572					46	24	2	0	0	0	0.027866	1	2309	2309		28.254	0	1	1411600	+		10257	35565	6968	6983	11798	11798					-0.0005306464175873771
EEELLHHKP	9	Unmodified	_EEELLHHKP_					0	0	0			REV__ENST00000537192.1_1_12:5480728-5487080:+|nuORF	REV__ENST00000537192.1_1_12:5480728-5487080:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7546997070312	2	566.293288	1130.57202	-0.25747	-0.0001458	2.7767	0.0015724	2.5192	0.0014266	566.2947613343501	50.472	1.007	50.323	49.819	50.826	-0.14915					61	29	4	0	0	0	0.024427	1	5278	5278		34.173	11.13	1	506760	+		10258	34695	6969	6984	11799	11799					0.011959399836086959
EEELRRRA	8	Unmodified	_EEELRRRA_					0	0	0			REV__ENST00000461023.5_1_16:343426-396314:-|nuORF	REV__ENST00000461023.5_1_16:343426-396314:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.80859375	2	529.788704	1057.56285	-0.36977	-0.0001959	-0.95636	-0.00050667	-1.3261	-0.00070257	529.7894530559944	73.338	0.41145	73.348	73.107	73.519	0.0096512					26	10	4	0	0	0	0.027866	1	8841	8841		25.45	0	1	525940	+		10259	21357	6970	6985	11800	11800					0.03637591417941621
EEEQGALEGA	10	Unmodified	_EEEQGALEGA_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.818603515625	2	516.727643	1031.44073	0.1926	9.9524E-05	1.0187	0.00052637	1.2113	0.0006259	516.7285094548348	21.503	0.47826	21.326	21.016	21.494	-0.17721					12	9	2	0	0	0	0.03519	1	684	684		45.972	1.8554	1	22083	+		10260	20051	6971	6986	11801	11801					-0.07372915174914851
EEESEIVKL	9	Unmodified	_EEESEIVKL_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2779541015625	2	538.279512	1074.54447	-1.0991	-0.00059162	0.95485	0.00051398	-0.14424	-7.7642E-05	538.2798669529697	45.661	0.70971	45.51	45.244	45.954	-0.15156					44	20	3	0	0	0	0.4752	1	4450	4450		60.972	3.1607	1	3651500			10261	7048	6972	6987	11802	11802					0.010179919327129028
EEETILYDLL	10	Unmodified	_EEETILYDLL_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2100830078125	3	413.21146	1236.61255	-0.19873	-8.2119E-05	-4.2445	-0.0017539	-4.4433	-0.001836	413.2096980260074	20.66	0.98939	20.437	20.216	21.206	-0.22344					38	19	3	0	0	0	1.0719	1	545	545		36.447	1.2685	1	448620			10262	6229	6973	6988	11803	11803					0.0037081679272432666
EEETKFIY	8	Unmodified	_EEETKFIY_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.8080444335938	2	529.755672	1057.49679	-0.34853	-0.00018463	-0.68252	-0.00036157	-1.031	-0.0005462	530.2546432594431	73.297	0.25869	73.307	73.181	73.44	0.0096512					11	6	2	0	0	0	0.027866	1	8852	8852		45.952	25.005	1	148100			10263	9743	6974	6989	11804	11804					-0.02965662267456537
EEETSPQEESV	11	Unmodified	_EEETSPQEESV_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.8467102050781	3	421.845617	1262.51502	-0.095223	-4.0169E-05	1.484	0.00062603	1.3888	0.00058586	421.8464834301196	33.233	2.4226	33.002	32.586	35.009	-0.23107					163	60	4	0	0	0	1.017	1	2350	2350		33.039	3.4886	1	12688000			10264	3416	6975	6990	11805	11805					-0.10573616874080471
EEEYEISKHAQ	11	Unmodified	_EEEYEISKHAQ_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7589111328125	3	454.877251	1361.60992	0.48773	0.00022186	2.1482	0.00097715	2.6359	0.001199	454.87832164400317	46.955	0.51831	46.955	46.733	47.252	0					30	13	4	0	0	0	0.024747	1	4703	4703		33.039	13.009	1	446390			10265	6479	6976	6991	11806	11806					-0.05641638612223687
EEEYEISKHAQ	11	Unmodified	_EEEYEISKHAQ_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.75921630859375	3	454.877251	1361.60992	0.51526	0.00023438	2.3038	0.001048	2.8191	0.0012823	454.8783427307449	47.098	0.52837	46.945	46.736	47.265	-0.15301					22	13	2	0	0	0	0.024747	1	4709	4709		39.873	18.093	1	408720			10266	6479	6976	6991	11807	11807					-0.05641638612223687
EEFRHIQRIFF	11	Unmodified	_EEFRHIQRIFF_					0	0	0			REV__ENST00000495197.1_1_10:38368986-38369799:-|nuORF	REV__ENST00000495197.1_1_10:38368986-38369799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3080749511719	3	507.936887	1520.78883	-1.027	-0.00052165	3.3312	0.001692	2.3042	0.0011704	508.27188057718394	43.599	0.13919	43.379	43.316	43.455	-0.21938					5	3	2	0	0	0	0.024851	1	3999	3999		14.086	1.1285	1	68259	+		10267	33797	6977	6992	11808	11808					0.049269155371575835
EEFSELPK	8	Unmodified	_EEFSELPK_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2766418457031	2	489.742565	977.470577	0.2169	0.00010623	3.6436	0.0017844	3.8605	0.0018907	489.74409685324076	64.467	1.064	64.467	63.772	64.836	0					38	28	3	0	0	0	0.027866	1	7626	7626		55.504	9.5523	1	265880			10268	5322	6978	6993	11809	11809					-0.01905931438955122
EEGENLFY	8	Unmodified	_EEGENLFY_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7	REV__ENSG00000121281|ENST00000673801|ADCY7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7165832519531	2	500.716547	999.418542	-0.041557	-2.0809E-05	0.19279	9.6531E-05	0.15123	7.5722E-05	500.71650096795923	71.287	0.90787	71.028	70.694	71.602	-0.25856					58	21	4	0	0	0	0.93274	1	8319	8319		47.916	1.9636	1	2644100	+		10269	22588	6979	6994	11810	11810					-0.08119094852702347
EEGGENWLSW	10	Unmodified	_EEGGENWLSW_					0	0	0		RPS6KB1-VMP1|8|fusion	RPS6KB1-VMP1|8|fusion	RPS6KB1-VMP1|8|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	603.75439453125	2	603.756735	1205.49892	-0.82699	-0.0004993	-2.248	-0.0013573	-3.075	-0.0018566	603.755470742626	47.814	0.83968	47.716	47.417	48.257	-0.097553					72	22	5	0	0	0	0.57825	1	4705	4705		79.451	10.664	1	2528100			10270	37845	6980	6995	11811	11811					-0.09561233529666424
EEGKELKSI	9	Unmodified	_EEGKELKSI_					0	0	0			REV__ENSG00000274349|ENST00000621410|ZNF658	REV__ENSG00000274349|ENST00000621410|ZNF658	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7848510742188	2	516.782222	1031.54989	-0.2569	-0.00013276	3.9186	0.0020251	3.6617	0.0018923	516.7841270902311	94.105	1.5772	94.105	93.645	95.222	0					106	37	4	0	0	0	0.077175	2	11968	11968;11980		118.74	9.2647	1	6750500	+		10271	29182	6981	6996	11812;11813	11812					0.03537715515176387
EEHPRGSIL	9	Unmodified	_EEHPRGSIL_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7896118164062	2	519.272355	1036.53016	-0.85571	-0.00044434	0.54472	0.00028286	-0.31099	-0.00016149	519.2728895704256	79.91	0.92517	79.932	79.603	80.528	0.021439					27	21	2	0	0	0	0.024367	1	9886	9886		44.377	18.803	1	136040			10272	38149	6982	6997	11814	11814					0.013353842950891703
EEIDEISKL	9	Unmodified	_EEIDEISKL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.801025390625	2	538.279512	1074.54447	0.051088	2.7499E-05	-0.98592	-0.0005307	-0.93483	-0.0005032	538.2789757156131	87.859	0.61044	87.877	87.756	88.366	0.018555					24	14	2	0	0	0	0.023239	1	10998	10998		84.916	21.609	1	66000	+		10273	23178	6983	6998	11815	11815					0.010179919327129028
EEIDNDLPQ	9	Unmodified	_EEIDNDLPQ_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3076782226562	2	536.743293	1071.47203	-0.29252	-0.00015701	2.7829	0.0014937	2.4903	0.0013367	536.7447040649594	68.398	0.33435	68.417	68.276	68.61	0.018913					13	8	2	0	0	0	0.023473	1	8097	8097		95.815	29.386	1	158610			10274	2991	6984	6999	11816	11816					-0.06084342140843546
EEIFLPSFLA	10	Unmodified	_EEIFLPSFLA_					0	0	0		ENST00000341255.3_1_22:44892405-44892621:-|nuORF	ENST00000341255.3_1_22:44892405-44892621:-|nuORF	ENST00000341255.3_1_22:44892405-44892621:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2799682617188	2	583.310615	1164.60668	-0.45774	-0.00026701	-3.7921	-0.002212	-4.2499	-0.002479	583.3079789937791	47.701	0.69078	47.603	47.238	47.929	-0.097553					37	18	3	0	0	0	0.03519	1	4643	4643		37.159	18.897	1	434730			10275	12490	6985	7000	11817	11817					0.030957630717011853
EEIKRLVK	8	Unmodified	_EEIKRLVK_					0	0	0			REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2921447753906	2	507.818941	1013.62333	0.063618	3.2306E-05	-0.33264	-0.00016892	-0.26903	-0.00013662	507.81855106151477	50.113	0.79193	50.194	49.884	50.676	0.08099					38	23	2	0	0	0	0.027866	1	5189	5189		37.159	3.6435	1	2013600	+		10276	28134	6986	7001	11818	11818					0.1170630874833023
EEIKRLVK	8	Unmodified	_EEIKRLVK_					0	0	0			REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2919006347656	2	507.818941	1013.62333	0.14952	7.5929E-05	-0.0009887	-5.0208E-07	0.14853	7.5427E-05	507.81875146920333	50.252	0.56116	50.146	49.933	50.494	-0.10558					29	14	3	0	0	0	0.027866	1	5141	5141		45.952	1.8352	1	789700	+		10277	28134	6986	7001	11819	11819					0.1170630874833023
EEILKESIP	9	Unmodified	_EEILKESIP_					0	0	0			REV__ENSG00000079101|ENST00000692774|CLUL1	REV__ENSG00000079101|ENST00000692774|CLUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2777709960938	2	529.292422	1056.57029	-1.397	-0.00073942	-0.56395	-0.0002985	-1.9609	-0.0010379	529.2921862308151	79.813	1.4273	79.641	79.15	80.577	-0.17226					39	33	2	0	0	0	0.024261	1	9989	9989		54.776	5.3348	1	130800	+		10278	20625	6987	7002	11820	11820					0.0442688617499698
EEILKESIP	9	Unmodified	_EEILKESIP_					0	0	0			REV__ENSG00000079101|ENST00000692774|CLUL1	REV__ENSG00000079101|ENST00000692774|CLUL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.292422	1056.57029	-0.96051	-0.00050839	-0.053508	-2.8321E-05	-1.014	-0.00053671	529.2923903364416	79.7	1.1284	79.7	79.119	80.247	0	0.007306	0.00076818	NaN	54.776	38	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125470	+		10279	20625	6987	7002							0.0442688617499698
EEILKESIP	9	Unmodified	_EEILKESIP_					0	0	0			REV__ENSG00000079101|ENST00000692774|CLUL1	REV__ENSG00000079101|ENST00000692774|CLUL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.292422	1056.57029	-0.37437	-0.00019815	-1.5338	-0.00081182	-1.9081	-0.00101	529.2918605177423	79.715	1.0815	79.736	79.277	80.358	0.021439	0.044041	-0.00079881	NaN	54.776	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107380	+		10280	20625	6987	7002							0.0442688617499698
EEILNLKTH	9	Unmodified	_EEILNLKTH_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF;ENST00000435913.1_1:143194333-143196710:-|nuORF;ENST00000421640.1_1:143391618-143393999:+|nuORF;ENST00000413897.2_1:143195830-143196710:-|nuORF;ENST00000399720.4_1_4:49490601-49491475:-|nuORF;ENST00000448844.1_1:143391618-143392505:+|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8445434570312	2	548.803488	1095.59242	-0.11048	-6.0632E-05	-0.91695	-0.00050322	-1.0274	-0.00056386	548.8029552983968	45.791	0.58379	45.694	45.494	46.078	-0.096653					25	15	2	0	0	0	0.024477	1	4340	4340		27.882	0	1	679160			10281	14380	6988	7003	11821	11821					0.04845110643418593
EEILTLNQTV	10	Unmodified	_EEILTLNQTV_					0	0	0			REV__ENST00000572517.1_1_17:1679804-1680737:+|nuORF	REV__ENST00000572517.1_1_17:1679804-1680737:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.3106079101562	2	580.313886	1158.61322	-0.43923	-0.00025489	-3.9269	-0.0022788	-4.3661	-0.0025337	580.3113900251544	74.359	0.87286	74.095	73.859	74.732	-0.26326					46	20	4	0	0	0	1.1088	1	8767	8767		31.53	4.8369	1	1617200	+	+	10282	19603	6989	7004	11822	11822					0.040256562324202605
EEIRAEVF	8	Unmodified	_EEIRAEVF_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.7559814453125	2	496.756007	991.497461	-0.4928	-0.0002448	-0.51929	-0.00025796	-1.0121	-0.00050277	496.75556177502483	39.438	0.71373	39.215	38.789	39.503	-0.22311					56	18	4	0	0	0	0.97924	1	3324	3324		40.573	0	1	2597900			10283	6563	6990	7005	11823	11823					0.0013717717223471482
EEISDYSRKL	10	Unmodified	_EEISDYSRKL_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.87664794921875	3	413.878704	1238.61428	-0.71626	-0.00029645	-2.0853	-0.00086306	-2.8016	-0.0011595	413.87692813687477	29.592	1.849	29.671	28.782	30.63	0.078346					102	45	4	0	0	0	1.0344	1	1789	1789		41.427	1.3684	1	3568300			10284	3309	6991	7006	11824	11824					0.004518706013186602
EEITMQEALES	11	Unmodified	_EEITMQEALES_					0	0	0			REV__ENSG00000059758|ENST00000261211|CDK17	REV__ENSG00000059758|ENST00000261211|CDK17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7135925292969	3	427.195592	1278.56495	-0.0018457	-7.8847E-07	3.9259	0.0016771	3.9241	0.0016763	427.19719712783007	30.949	0.54401	31.024	30.75	31.294	0.074314					20	12	2	0	0	0	0.024735	1	1994	1994		27.644	2.5179	1	72315	+		10285	20245	6992	7007	11825	11825					-0.06319205469753797
EEIYKNKNEV	10	Unmodified	_EEIYKNKNEV_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5133972167969	3	422.550587	1264.62993	-0.38405	-0.00016228	-3.3678	-0.0014231	-3.7518	-0.0015853	422.5493398756923	31.91	0.27987	31.922	31.663	31.943	0.011797					9	6	2	0	0	0	0.03519	1	2137	2137		19.263	0	1	62479	+		10286	28470	6993	7008	11826	11826					0.008201571183690248
EEKEKSFTL	9	Unmodified	_EEKEKSFTL_					0	0	0			REV__ENST00000474271.1_1_14:104038142-104073571:+|nuORF	REV__ENST00000474271.1_1_14:104038142-104073571:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.3265991210938	2	555.787504	1109.56045	-0.67151	-0.00037322	1.5239	0.00084698	0.85241	0.00047376	555.7879274952192	61.065	0.49127	60.852	60.604	61.096	-0.2134					27	12	3	0	0	0	0.022411	1	6980	6980		79.713	22.992	1	244510	+		10287	29075	6994	7009	11827	11827					0.010056981696379808
EEKEKSFTL	9	Unmodified	_EEKEKSFTL_					0	0	0			REV__ENST00000474271.1_1_14:104038142-104073571:+|nuORF	REV__ENST00000474271.1_1_14:104038142-104073571:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.3270874023438	2	555.787504	1109.56045	-0.72439	-0.00040261	0.65741	0.00036538	-0.06698	-3.7227E-05	555.7872630807461	60.778	0.71023	60.849	60.566	61.276	0.071457					35	18	3	0	0	0	0.024313	1	6892	6892		69.628	28.849	1	218390	+		10288	29075	6994	7009	11828	11828					0.010056981696379808
EEKGMFCL	8	Unmodified	_EEKGMFCL_					0	0	0		ENST00000591230.5_1_18:56531452-56532595:+|nuORF	ENST00000591230.5_1_18:56531452-56532595:+|nuORF	ENST00000591230.5_1_18:56531452-56532595:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.27777099609375	2	478.714439	955.414325	2.1513	0.0010299	-1.6036	-0.00076769	0.54769	0.00026219	478.7133188658595	82.712	0.47334	82.602	82.379	82.853	-0.11006					17	10	2	0	0	0	0.027866	1	10281	10281		31.955	0	1	143000			10289	17347	6995	7010	11829	11829					-0.0651659887163305
EEKGRLGDL	9	Unmodified	_EEKGRLGDL_					0	0	0		nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18;ENSG00000186891|ENST00000379268|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.27691650390625	2	508.772188	1015.52982	-0.54006	-0.00027477	2.0837	0.0010601	1.5436	0.00078533	508.77200365050044	33.945	1.2	33.945	33.626	34.826	0					58	30	3	0	0	0	0.40693	1	2523	2523		65.465	5.3471	1	5734900			10290	9589	6996	7011	11830	11830					0.02267964575219139
EEKKKAPK	8	Unmodified	_EEKKKAPK_					0	0	0			REV__ENSG00000101421|ENST00000217402|CHMP4B	REV__ENSG00000101421|ENST00000217402|CHMP4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2671813964844	2	479.290017	956.565481	0.58874	0.00028218	-0.70906	-0.00033984	-0.12032	-5.7668E-05	479.28964233338564	23.882	0.43784	23.667	23.384	23.822	-0.2151					19	9	3	0	0	0	0.027866	1	992	992		19.36	0	1	73087	+		10291	21233	6997	7012	11831	11831					0.0854604682289164
EEKKKAPK	8	Unmodified	_EEKKKAPK_					0	0	0			REV__ENSG00000101421|ENST00000217402|CHMP4B	REV__ENSG00000101421|ENST00000217402|CHMP4B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.290017	956.565481	-0.31893	-0.00015286	0.66837	0.00032034	0.34944	0.00016748	479.2900444793331	23.721	0.37005	23.541	23.281	23.651	-0.17989	-0.062859	0.00058593	NaN	19.36	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69065	+		10292	21233	6997	7012							0.0854604682289164
EEKKKYYDT	9	Unmodified	_EEKKKYYDT_					0	0	0		nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-4|CASP5;nc|ENSG00000137757|P51878-6|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	nc|ENSG00000137757|P51878-2|CASP5	nc|ENSG00000137757|P51878-2|CASP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5513916015625	3	401.867916	1202.58192	1.3731	0.00055182	-2.8319	-0.0011381	-1.4588	-0.00058625	402.20166971955945	23.342	0.49935	23.151	22.942	23.442	-0.19117					15	11	2	0	0	0	0.024359	1	900	900		32.751	0	1	24749			10293	18316	6998	7013	11832	11832					-0.011269168016724507
EEKKRRKKKRW	11	Unmodified	_EEKKRRKKKRW_					0	0	0			REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF	REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2870483398438	3	524.658347	1570.95321	0.29615	0.00015538	0.59733	0.0003134	0.89348	0.00046877	524.9932565947777	18.699	0.44554	18.496	18.262	18.708	-0.20371					15	8	3	0	0	0	0.024896	1	309	309		6.3209	4.9021	1	16930	+		10294	32880	6999	7014	11833	11833					0.19057352747745426
EEKLRALQSH	10	Unmodified	_EEKLRALQSH_					0	0	0		nc|ENSG00000158163|Q8IYY4-2|DZIP1L;ENSG00000158163|ENST00000327532|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8311157226562	2	605.830569	1209.64658	0.048131	2.9159E-05	-0.40133	-0.00024314	-0.3532	-0.00021398	605.8302380939462	17.769	0.58827	17.627	17.407	17.995	-0.14278					22	11	3	0	0	0	1.0992	1	189	189		32.812	2.4947	1	159290			10295	6651	7000	7015	11834	11834					0.050147027950060874
EEKRAKLR	8	Unmodified	_EEKRAKLR_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3115844726562	2	515.311815	1028.60908	1.1229	0.00057866	-2.0475	-0.0010551	-0.92454	-0.00047643	515.3108501398033	20.119	1.0239	19.919	19.653	20.676	-0.2001					53	20	5	0	0	0	0.91239	1	521	521		50.025	0	1	7938700			10296	18451	7001	7016	11835	11835					0.09591656320026232
EEKRILLQ	8	Unmodified	_EEKRILLQ_					0	0	0		nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-4|SEZ6L2;nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	MSMS	OPSCC_39_ClassI_Rep-3	3	514.8052978515625	2	514.808574	1027.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.791	1	68.806	68.306	69.306	0.015129								0	0	0	0.34404	1	8181	8181		74.255	0	1				10297	8510	7002	7017	11836	11836					0.0898971836866167
EEKRKCDAP	9	Unmodified	_EEKRKCDAP_					0	0	0			REV__ENSG00000172216|ENST00000303004|CEBPB	REV__ENSG00000172216|ENST00000303004|CEBPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7428588867188	2	538.263673	1074.51279	-1.4999	-0.00080733	1.9357	0.0010419	0.43581	0.00023458	538.2645257203208	60.802	1.0513	60.548	60.253	61.304	-0.25373					61	25	4	0	0	0	0.024374	1	6858	6858		40.778	0	1	2340900	+		10298	26647	7003	7018	11837	11837					-0.021482793022187252
EEKRKKRA	8	Unmodified	_EEKRKKRA_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2976684570312	2	522.817264	1043.61998	-0.074155	-3.877E-05	4.0916	0.0021391	4.0174	0.0021004	522.8195733451391	51.756	0.21744	51.637	51.54	51.758	-0.11876					7	5	2	0	0	0	0.027866	1	5340	5340		29.15	0	1	125140			10299	2826	7004	7019	11838	11838					0.09991058694322419
EEKRKPTV	8	Unmodified	_EEKRKPTV_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;USP8-MYEF2|1|fusion	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2596130371094	2	493.785099	985.555644	-0.012745	-6.2931E-06	-3.505	-0.0017307	-3.5178	-0.001737	493.7833271997216	82.724	0.94425	82.724	82.279	83.223	0					46	21	4	0	0	0	0.027866	1	10398	10398		32.812	7.3622	1	800000			10300	18321	7005	7020	11839	11839					0.06228858817519267
EEKRKREDSI	10	Unmodified	_EEKRKREDSI_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	644.811767578125	2	645.34404	1288.67353	0.17886	0.00011543	2.7968	0.0018049	2.9757	0.0019203	645.345730680854	47.644	0.40427	47.375	47.163	47.567	-0.26939					21	10	3	0	0	0	0.03519	1	4625	4625		31.53	4.8369	1	318450			10301	3855	7006	7021	11840	11840					0.04073766615533714
EEKRKREDSI	10	Unmodified	_EEKRKREDSI_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	645.34404	1288.67353	-2.2288	-0.0014384	5.1349	0.0033138	2.9061	0.0018754	645.3474224735319	47.306	0.44709	47.21	46.971	47.418	-0.096653	-0.060776	0.0022453	NaN	62.107	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271620			10302	3855	7006	7021							0.04073766615533714
EELAERGGL	9	Unmodified	_EELAERGGL_					0	0	0			REV__ENST00000278935.7_2_11:117283083-117283290:+|nuORF	REV__ENST00000278935.7_2_11:117283083-117283290:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7703857421875	2	487.251089	972.487624	-0.83383	-0.00040628	-3.5045	-0.0017075	-4.3383	-0.0021138	487.25013993993724	79.956	0.62791	79.977	79.561	80.189	0.021439					26	14	3	0	0	0	0.024495	1	9836	9836		26.693	0	1	87002	+		10303	29869	7007	7022	11841	11841					0.00027989166869701876
EELAVHLGF	9	Unmodified	_EELAVHLGF_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.292236328125	2	507.766374	1013.5182	0.11101	5.6366E-05	-3.9503	-0.0020058	-3.8393	-0.0019495	507.7643189773902	50.64	0.55151	50.459	50.209	50.76	-0.18071					31	14	3	0	0	0	0.024354	1	5159	5159		38.806	0	1	1348700			10304	6738	7008	7023	11842	11842					0.01197767551900597
EELAWKIAK	9	Unmodified	_EELAWKIAK_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7821655273438	2	544.310949	1086.60735	-1.92	-0.0010451	-2.8173	-0.0015335	-4.7374	-0.0025786	544.3092594012799	38.817	0.52637	38.844	38.612	39.138	0.027279					28	13	3	0	0	0	0.024288	1	3198	3198		62.107	16.155	1	231000			10305	2917	7009	7024	11843	11843					0.06750602511419856
EELEGAAEPE	10	Unmodified	_EELEGAAEPE_					0	0	0		nc|ENSG00000165801|Q8TER5-3|ARHGEF40;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8130493164062	2	537.235301	1072.45605	0.096255	5.1711E-05	1.3634	0.00073249	1.4597	0.0007842	537.235893804298	71.301	0.69017	71.301	71.105	71.795	0					33	17	3	0	0	0	0.03519	1	8638	8638		39.253	17.293	1	323010			10306	18469	7010	7025	11844	11844					-0.07728048377771302
EELFHLLN	8	Unmodified	_EELFHLLN_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000116254|ENST00000262450|CHD5	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000116254|ENST00000262450|CHD5	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2931213378906	2	507.766374	1013.5182	0.1363	6.921E-05	-4.2932	-0.00218	-4.1569	-0.0021107	507.7642220619569	50.519	0.66523	50.412	50.125	50.79	-0.10712					33	17	3	0	0	0	0.027866	1	5177	5177		47.916	10.756	1	1251600			10307	3129;8003;3539	7011	7026	11845	11845					0.011977675518892283
EELFIKEEG	9	Unmodified	_EELFIKEEG_					0	0	0		nc|ENSG00000169635|Q96JB3-2|HIC2;ENSG00000169635|ENST00000407464|HIC2	nc|ENSG00000169635|Q96JB3-2|HIC2	nc|ENSG00000169635|Q96JB3-2|HIC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.7845458984375	2	547.274229	1092.53391	0.37876	0.00020728	-2.8526	-0.0015612	-2.4739	-0.0013539	547.2742666329743	84.037	0.30273	83.825	83.683	83.986	-0.21159					10	6	2	0	0	0	0.024447	1	10138	10138		32.812	0	1	26641			10308	7960	7012	7027	11846	11846					-0.008659907217179352
EELGDCNLFE	10	Unmodified	_EELGDCNLFE_					0	0	0			REV__nc|ENSG00000223519|B7ZC32|KIF28P	REV__nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.2799072265625	2	584.744979	1167.4754	-1.3237	-0.00077405	-4.2144	-0.0024644	-5.5381	-0.0032384	584.7429011860506	48.07	0.22561	47.794	47.664	47.89	-0.27598					8	5	2	0	0	0	0.03519	1	4714	4714		18.262	0	1	45414	+		10309	37135	7013	7028	11847	11847					-0.10163415358510974
EELHHKLQE	9	Unmodified	_EELHHKLQE_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.81396484375	2	581.796195	1161.57784	-0.18332	-0.00010665	-0.91624	-0.00053306	-1.0996	-0.00063972	581.7958267735838	20.266	0.437	20.043	19.779	20.216	-0.22344					14	8	2	0	0	0	0.024457	1	474	474		45.952	6.6991	1	44395			10310	1296	7014	7029	11848	11848					0.0035103849527331477
EELHMPITV	9	Unmodified	_EELHMPITV_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2965698242188	2	534.773342	1067.53213	0.19824	0.00010602	-4.0607	-0.0021715	-3.8624	-0.0020655	534.7717527955347	80.081	0.71342	79.835	79.278	79.992	-0.24651					26	16	2	0	0	0	0.024381	1	9566	9566		37.159	11.585	1	249860			10311	6401	7015	7030	11849	11849					0.0010667698866200226
EELIEKAV	8	Unmodified	_EELIEKAV_					0	0	0		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	465.76068115234375	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.63	1	86.585	86.085	87.085	-0.045105								0	0	0	0.34661	1	10851	10851		90.777	3.0224	1				10312	4297	7016	7031	11850	11850					0.039389454577644756
EELIKFSFH	9	Unmodified	_EELIKFSFH_					0	0	0		ENSG00000265203|ENST00000584701|RBP3;RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.2977294921875	2	575.300581	1148.58661	-0.98028	-0.00056396	-4.3345	-0.0024937	-5.3148	-0.0030576	575.2979402018559	44.084	0.75118	43.94	43.675	44.426	-0.14471					47	21	3	0	0	0	0.94809	1	4168	4168		29.15	3.0862	1	3969400			10313	10966	7017	7032	11851	11851					0.01826012131778043
EELIPEKLE	9	Unmodified	_EELIPEKLE_					0	0	0		ENSG00000172766|ENST00000379406|NAA16	ENSG00000172766|ENST00000379406|NAA16	ENSG00000172766|ENST00000379406|NAA16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.773681640625	2	550.297704	1098.58086	-1.2801	-0.00070445	0.82892	0.00045616	-0.4512	-0.00024829	550.2986065072402	55.347	1.3243	55.445	55.148	56.473	0.098011					46	35	2	0	0	0	0.02433	1	6006	6006		61.691	3.4614	1	139880			10314	8303	7018	7033	11852	11852					0.035508688294157764
EELKILLS	8	Unmodified	_EELKILLS_					0	0	0		ENST00000264990.10_1_3:132297708-132322075:-|nuORF	ENST00000264990.10_1_3:132297708-132322075:-|nuORF	ENST00000264990.10_1_3:132297708-132322075:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2850646972656	2	472.786776	943.558998	-0.048817	-2.308E-05	-3.3009	-0.0015606	-3.3498	-0.0015837	472.78680744145635	83.513	1.1635	83.513	83.008	84.171	0					63	26	4	0	0	0	0.73796	2	10419	10419;10431		64.207	7.4862	1	3630700			10315	11579	7019	7034	11853;11854	11853					0.08496108871520391
EELKILLS	8	Unmodified	_EELKILLS_					0	0	0		ENST00000264990.10_1_3:132297708-132322075:-|nuORF	ENST00000264990.10_1_3:132297708-132322075:-|nuORF	ENST00000264990.10_1_3:132297708-132322075:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.78704833984375	2	472.786776	943.558998	0.87366	0.00041306	-0.18571	-8.7802E-05	0.68795	0.00032525	472.7863338932956	83.585	1.1537	83.373	83.049	84.202	-0.21159					56	26	4	0	0	0	1.0106	1	10070	10070		35.618	0	1	1961500			10316	11579	7019	7034	11855	11855					0.08496108871520391
EELLALLQ	8	Unmodified	_EELLALLQ_					0	0	0			REV__ENSG00000132003|ENST00000590508|ZSWIM4	REV__ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.7716979980469	2	464.771126	927.527698	-0.77126	-0.00035846	1.2919	0.00060043	0.52063	0.00024198	464.7715669173861	75.907	0.8396	75.907	75.551	76.391	0					41	21	3	0	0	0	1.043	1	9350	9350		30.504	1.3541	1	1459500	+		10317	23250	7020	7035	11856	11856					0.061035358374169846
EELLGRAL	8	Unmodified	_EELLGRAL_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.27838134765625	2	450.761092	899.507631	-0.042739	-1.9265E-05	0.096639	4.3561E-05	0.053899	2.4296E-05	450.7608737030046	66.776	0.46141	66.776	66.588	67.049	0					15	10	2	0	0	0	0.027866	1	7967	7967		60.294	0	1	230540	+		10318	20368	7021	7036	11857	11857					0.053857848974644185
EELLKCYF	8	Unmodified	_EELLKCYF_					0	0	0			REV__ENSG00000139132|ENST00000534526|FGD4	REV__ENSG00000139132|ENST00000534526|FGD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3234252929688	2	522.757161	1043.49977	0.43506	0.00022743	1.2802	0.00066926	1.7153	0.00089669	522.7582346712127	71.423	1.3323	71.135	70.761	72.093	-0.28857					41	34	2	0	0	0	0.027866	1	8763	8763		42.474	5.3154	1	179670	+		10319	23916	7022	7037	11858	11858					-0.02024110414322422
EELLKKAK	8	Unmodified	_EELLKKAK_					0	0	0		nc|ENSG00000165699|Q92574-2|TSC1;ENSG00000165699|ENST00000298552|TSC1	nc|ENSG00000165699|Q92574-2|TSC1	nc|ENSG00000165699|Q92574-2|TSC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.731201171875	2	479.800217	957.585882	-0.43559	-0.000209	-0.25439	-0.00012206	-0.68998	-0.00033105	479.7998818724397	30.999	0.79355	30.999	30.675	31.469	0					39	18	3	0	0	0	0.027866	1	2073	2073		45.952	0	1	400020			10320	7456	7023	7038	11859	11859					0.1053921748269886
EELLKRKV	8	Unmodified	_EELLKRKV_					0	0	0			REV__nc|ENSG00000128487|Q5M775-4|SPECC1	REV__nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29254150390625	2	507.818941	1013.62333	-0.12027	-6.1077E-05	-0.40723	-0.0002068	-0.52751	-0.00026788	507.8187065112215	50.39	0.73101	50.239	49.924	50.655	-0.1512					64	21	5	0	0	0	0.027866	1	5293	5293		51.335	1.8939	1	1838400	+		10321	22984	7024	7039	11860	11860					0.1170630874833023
EELLKRKV	8	Unmodified	_EELLKRKV_					0	0	0			REV__nc|ENSG00000128487|Q5M775-4|SPECC1	REV__nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.29278564453125	2	507.818941	1013.62333	-0.0068726	-3.49E-06	0.17504	8.889E-05	0.16817	8.54E-05	507.8189077121325	50.482	0.70633	50.202	49.992	50.699	-0.27977					34	18	3	0	0	0	0.027866	1	5195	5195		45.952	3.5558	1	757870	+		10322	22984	7024	7039	11861	11861					0.1170630874833023
EELLQEIDI	9	Unmodified	_EELLQEIDI_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.S1932Rfs*57|1|0.11|ENSG00000198198|chr1:43435262-43435262|T/-|frameshift_variant;ENST00000470139.1_2_1:43893713-43894182:+|nuORF	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8175048828125	2	551.287337	1100.56012	-0.66487	-0.00036654	1.6968	0.00093545	1.032	0.00056891	551.2881319398265	41.704	0.50441	41.571	41.352	41.857	-0.13219					36	13	3	0	0	0	0.02435	1	3775	3775		42.396	0	1	732780			10323	10106	7025	7040	11862	11862					0.013862784497632674
EELLWVGTS	9	Unmodified	_EELLWVGTS_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000543530.1_1_11:73076398-73078822:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	517.263665	1032.51278	-0.31084	-0.00016079	3.1804	0.0016451	2.8695	0.0014843	517.2661200348435	53.892	0.089981	53.695	53.619	53.709	-0.19739					4	2	2	0	0	0	0.024354	1	5657	5657		57.811	19.005	1	50276			10324	3030	7026	7041	11863	11863					-0.00217956030564892
EELNTLKNV	9	Unmodified	_EELNTLKNV_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2884521484375	2	530.287671	1058.56079	-0.82168	-0.00043573	2.2451	0.0011905	1.4234	0.0007548	530.2886685901052	45.63	0.77491	45.63	45.246	46.021	0					59	22	4	0	0	0	0.45795	1	4460	4460		62.107	1.1355	1	8452700	+		10325	22020	7027	7042	11864	11864					0.03385117889456524
EELNVSVVAN	10	Unmodified	_EELNVSVVAN_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3313598632812	2	537.277303	1072.54005	-1.11	-0.00059639	2.5042	0.0013454	1.3942	0.00074906	537.278770820523	46.786	0.50552	46.592	46.38	46.886	-0.19387					16	14	2	0	0	0	0.03519	1	4527	4527		44.377	22.417	1	242510			10326	6023	7028	7043	11865	11865					0.006685275098107013
EELQDRVLIL	10	Unmodified	_EELQDRVLIL_					0	0	0		ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1;ENST00000546420.5_1_12:120437705-120530962:+|nuORF	ENSG00000135127|ENST00000548673|BICDL1	ENSG00000135127|ENST00000548673|BICDL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.8863525390625	3	409.902961	1226.68705	0.51907	0.00021277	1.4447	0.00059217	1.9637	0.00080494	410.23620452322933	34.609	0.31073	34.609	34.515	34.826	0					10	7	2	0	0	0	0.03519	1	2622	2622		68.846	15.249	1	57059			10327	4864	7029	7044	11866	11866					0.08277624394759187
EELQIFGL	8	Unmodified	_EELQIFGL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2405090332031	2	474.755475	947.496398	0.45738	0.00021714	-3.936	-0.0018686	-3.4786	-0.0016515	474.7534540180994	36.753	0.76663	36.69	36.432	37.198	-0.063385					34	19	3	0	0	0	0.027866	1	2999	2999		37.028	24.822	1	372330			10328	922	7030	7045	11867	11867					0.020549628033450063
EELQIFGL	8	Unmodified	_EELQIFGL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	474.755475	947.496398	1.7612	0.00083612	-3.7716	-0.0017906	-2.0105	-0.00095448	474.7537909269741	36.907	0.47198	36.907	36.648	37.12	0	0.078985	-0.00065698	NaN	37.028	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377360			10329	922	7030	7045							0.020549628033450063
EELQIFGL	8	Unmodified	_EELQIFGL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	474.755475	947.496398	0.069494	3.2993E-05	-1.9492	-0.0009254	-1.8797	-0.00089241	474.75455220798824	36.85	0.54836	36.888	36.684	37.232	0.03804	0.059512	0.0010734	NaN	37.028	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341050			10330	922	7030	7045							0.020549628033450063
EELRKKAL	8	Unmodified	_EELRKKAL_					0	0	0			REV__ENST00000610146.1_1_1:155951728-155952130:+|nuORF	REV__ENST00000610146.1_1_1:155951728-155952130:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.80364990234375	2	493.803291	985.59203	-0.091808	-4.5335E-05	-0.02367	-1.1688E-05	-0.11548	-5.7023E-05	493.80319864929896	23.332	0.83235	23.13	22.78	23.612	-0.20193					49	18	4	0	0	0	0.95679	1	930	930		44.117	1.7207	1	2039900	+		10331	35995	7031	7046	11868	11868					0.09865735714231505
EELRPSNAFAF	11	Unmodified	_EELRPSNAFAF_					0	0	0		ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.74041748046875	3	427.547177	1279.6197	0.68855	0.00029439	4.3388	0.001855	5.0273	0.0021494	427.88335722886063	22.403	0.55651	22.214	21.863	22.42	-0.18894					13	11	2	0	0	0	0.024762	1	785	785		36.318	11.25	1	38323			10332	4471	7032	7047	11869	11869					-0.008924058161937864
EELRPSNAFAF	11	Unmodified	_EELRPSNAFAF_					0	0	0		ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	427.547177	1279.6197	-0.64739	-0.00027679	6.4006	0.0027366	5.7532	0.0024598	427.5498696182062	22.131	0.65589	22.131	21.916	22.572	0	-0.034945	0.00027239	NaN	36.318	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41704			10333	4471	7032	7047							-0.008924058161937864
EELRPSNAFAF	11	Unmodified	_EELRPSNAFAF_					0	0	0		ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	427.547177	1279.6197	-0.36014	-0.00015398	6.6402	0.002839	6.2801	0.002685	427.5497416096528	22.229	0.56691	22.154	21.939	22.506	-0.075296	-0.012673	0.00057966	NaN	36.318	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64772			10334	4471	7032	7047							-0.008924058161937864
EELSLRGNP	9	Unmodified	_EELSLRGNP_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29254150390625	2	507.764363	1013.51417	-0.14384	-7.3035E-05	0.86339	0.0004384	0.71955	0.00036536	507.76480262489014	50.558	0.69173	50.408	50.1	50.792	-0.14916					47	20	4	0	0	0	0.024257	1	5293	5293		41.427	0	1	4074300			10335	7076	7033	7048	11870	11870					0.007956780581935163
EELSLRGNP	9	Unmodified	_EELSLRGNP_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2928466796875	2	507.764363	1013.51417	0.14868	7.5496E-05	0.17336	8.8029E-05	0.32205	0.00016353	507.7643630179856	50.245	0.55361	50.326	50.022	50.576	0.08099					46	16	4	0	0	0	0.024337	1	5200	5200		58.23	24.057	1	4018400			10336	7076	7033	7048	11871	11871					0.007956780581935163
EELSSPGR	8	Unmodified	_EELSSPGR_					0	0	0		nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7	nc|ENSG00000274211|O14512|SOCS7	nc|ENSG00000274211|O14512|SOCS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2797546386719	2	437.716882	873.41921	-0.36336	-0.00015905	1.8874	0.00082614	1.524	0.00066709	437.7176062099673	21.841	0.48202	21.628	21.363	21.845	-0.2128					15	9	2	0	0	0	0.027866	1	671	671		21.96	6.3181	1	30986			10337	11027	7034	7049	11872	11872					-0.02256255412999053
EELSTSMV	8	Unmodified	_EELSTSMV_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.20819091796875	2	448.207501	894.400449	0.48938	0.00021934	1.0248	0.00045931	1.5141	0.00067865	448.2079089980502	21.589	2.5273	21.411	21.065	23.592	-0.17721					105	54	4	0	0	0	0.96719	1	691	691		42.474	5.3154	1	336830	+		10338	27624	7035	7050	11873	11873					-0.05097553099074048
EELSTSMV	8	Unmodified	_EELSTSMV_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.75103759765625	2	448.207501	894.400449	0.33657	0.00015085	1.1834	0.00053043	1.52	0.00068128	448.2079899366077	20.988	0.72489	20.811	20.484	21.209	-0.17721					37	14	4	0	0	0	0.027866	1	611	611		26.796	1.3459	1	710840	+		10339	27624	7035	7050	11874	11874					-0.05097553099074048
EELTLGVWEA	10	Unmodified	_EELTLGVWEA_					0	0	0			REV__ENSG00000086504|ENST00000199706|MRPL28	REV__ENSG00000086504|ENST00000199706|MRPL28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.2801513671875	2	573.787504	1145.56045	0.15957	9.1557E-05	2.5906	0.0014864	2.7501	0.001578	573.787569707515	24.039	0.26512	23.824	23.689	23.954	-0.2151					8	5	2	0	0	0	0.03519	1	1025	1025		20.947	0	1	30311	+		10340	20773	7036	7051	11875	11875					-0.006503018303646968
EELVIGPALI	10	Unmodified	_EELVIGPALI_					0	0	0			REV__ENST00000428941.5_1_X:123095883-123156424:+|nuORF	REV__ENST00000428941.5_1_X:123095883-123156424:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.31201171875	2	527.313158	1052.61176	-0.33057	-0.00017431	-2.8166	-0.0014852	-3.1472	-0.0016596	527.3115949211424	36.757	0.83615	36.693	36.432	37.268	-0.063385					51	21	3	0	0	0	0.87795	1	2929	2929		55.504	2.1528	1	3753000	+		10341	32326	7037	7052	11876	11876					0.08756066934324735
EELVRLVTL	9	Unmodified	_EELVRLVTL_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3074951171875	2	536.324057	1070.63356	-0.28764	-0.00015427	-3.3532	-0.0017984	-3.6409	-0.0019527	536.3235777089291	68.247	0.78197	67.955	67.507	68.289	-0.29267					26	19	2	0	0	0	0.023239	1	8180	8180		96.19	21.935	1	417350			10342	18187	7038	7053	11877	11877					0.10106871682910423
EELVRLVTL	9	Unmodified	_EELVRLVTL_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.324057	1070.63356	-0.12458	-6.6818E-05	-1.1119	-0.00059633	-1.2365	-0.00066315	536.3232505193776	67.773	0.38119	67.773	67.606	67.987	0	-0.11645	4.276E-05	NaN	96.19	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548610			10343	18187	7038	7053							0.10106871682910423
EELVRLVTL	9	Unmodified	_EELVRLVTL_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;chr3:172754660-172755298|479|16.47|0.9|4.19|+|ENST00000428567|ECT2,ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.324057	1070.63356	-0.31201	-0.00016734	-0.60521	-0.00032459	-0.91723	-0.00049193	536.3237073008426	67.922	0.56924	67.941	67.707	68.276	0.018913	0.051218	0.00058624	NaN	96.19	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336390			10344	18187	7038	7053							0.10106871682910423
EEMTKLEKN	9	Oxidation (M)	_EEM(Oxidation (M))TKLEKN_		EEM(1)TKLEKN		EEM(67)TKLEKN	0	0	1			REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.2785034179688	2	569.276446	1136.53834	-0.96243	-0.00054789	1.6845	0.00095897	0.72211	0.00041108	569.2772724119607	82.436	2.25	82.436	81.791	84.041	0					133	52	4	0	0	0	0.37611	1	10312	10312		67.494	6.5217	1	1615000	+		10345	36442	7039	7054	11878	11878		965			-0.024468495704468296
EEMTKLEKN	9	Oxidation (M)	_EEM(Oxidation (M))TKLEKN_		EEM(1)TKLEKN		EEM(78)TKLEKN	0	0	1			REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.2765502929688	2	569.276446	1136.53834	-1.108	-0.00063075	1.4443	0.00082219	0.33629	0.00019144	569.2769780262627	79.841	2.7082	79.669	79.15	81.858	-0.17225					169	65	4	0	0	0	0.28047	1	9857	9857		78.264	8.6362	1	2401400	+		10346	36442	7039	7054	11879	11879		965			-0.024468495704468296
EENKDQPLQ	9	Unmodified	_EENKDQPLQ_					0	0	0		KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2890014648438	2	550.76456	1099.51457	-0.91992	-0.00050666	1.2375	0.00068157	0.31758	0.00017491	550.7651526267789	45.493	0.71507	45.344	45.044	45.759	-0.1488					33	20	2	0	0	0	0.02435	1	4360	4360		60.972	0	1	1906900			10347	10759	7040	7055	11880	11880					-0.031209470126214
EENKDQPLQ	9	Unmodified	_EENKDQPLQ_					0	0	0		KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.76456	1099.51457	-0.5609	-0.00030893	0.74311	0.00040928	0.1822	0.00010035	550.7648841300295	45.42	0.59984	45.42	45.114	45.714	0	0.027808	-0.00021032	NaN	51.335	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1624200			10348	10759	7040	7055							-0.031209470126214
EENKDQPLQ	9	Unmodified	_EENKDQPLQ_					0	0	0		KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.76456	1099.51457	-0.56167	-0.00030935	0.92473	0.00050931	0.36306	0.00019996	550.7650086240353	45.368	0.57094	45.412	45.145	45.716	0.04388	0.020083	-1.0264E-05	NaN	51.335	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1685500			10349	10759	7040	7055							-0.031209470126214
EENKYSRAK	9	Unmodified	_EENKYSRAK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7885131835938	2	562.78837	1123.56219	-0.47461	-0.00026711	0.05961	3.3548E-05	-0.415	-0.00023356	562.7882250523897	30.286	0.58576	30.042	29.779	30.364	-0.24415					37	13	4	0	0	0	0.32811	1	1927	1927		71.877	9.7701	1	851250			10350	6327	7041	7056	11881	11881					0.005347519782162635
EENLATAKHDL	11	Unmodified	_EENLATAKHDL_					0	0	0		ENST00000478551.1_1_3:45868846-45870002:-|nuORF;ENST00000469874.5_1_3:45867808-45883491:-|nuORF;nc|ENSG00000163818|Q9NQ48-3|LZTFL1;nc|ENSG00000163818|Q9NQ48-2|LZTFL1;ENSG00000163818|ENST00000296135|LZTFL1	ENST00000478551.1_1_3:45868846-45870002:-|nuORF	ENST00000478551.1_1_3:45868846-45870002:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.1986389160156	3	414.210453	1239.60953	-0.26772	-0.00011089	-3.9696	-0.0016442	-4.2373	-0.0017551	414.2086894297175	20.79	0.49621	20.566	20.266	20.762	-0.22344					23	9	4	0	0	0	0.024779	1	576	576		27.644	14.686	1	21262			10351	7152	7042	7057	11882	11882					-0.0006901354142883065
EENLIWPLS	9	Unmodified	_EENLIWPLS_					0	0	0			REV__ENSG00000165072|ENST00000377182|MAMDC2	REV__ENSG00000165072|ENST00000377182|MAMDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2890014648438	2	550.784764	1099.55498	-1.4224	-0.00078342	1.089	0.00059982	-0.33333	-0.00018359	550.7847042171553	44.847	0.92529	44.698	44.288	45.214	-0.1488					52	26	3	0	0	0	0.024292	1	4360	4360		58.782	2.0609	1	1591800	+		10352	25835	7043	7058	11883	11883					0.009180193778092871
EENPRNQL	8	Unmodified	_EENPRNQL_					0	0	0		ENSG00000186448|ENST00000344387|ZNF197;nc|ENSG00000186448|O14709-2|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.79296875	2	500.246338	998.478122	-0.31866	-0.00015941	3.674	0.0018379	3.3553	0.0016785	500.2478830600381	52.185	0.48339	52.001	51.669	52.153	-0.18404					15	12	2	0	0	0	0.027866	1	5356	5356		60.972	24.525	1	118340			10353	9550	7044	7059	11884	11884					-0.0211777911866875
EENVEELNI	9	Unmodified	_EENVEELNI_					0	0	0			REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7823486328125	2	544.758943	1087.50333	-2.0326	-0.0011073	3.5909	0.0019562	1.5583	0.00084891	544.7623731059097	38.707	0.30852	38.735	38.651	38.96	0.027275					9	7	2	0	0	0	0.024374	1	3208	3208		49.442	5.3247	1	38533	+		10354	32450	7045	7060	11885	11885					-0.036917691067628766
EEPADWQTYR	10	Unmodified	_EEPADWQTYR_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.7860717773438	2	647.788566	1293.56258	-2.578	-0.00167	-1.754	-0.0011362	-4.3321	-0.0028063	647.7874111224119	52.635	1.0188	52.508	52.234	53.253	-0.12705					74	25	5	0	0	0	1.1307	1	5503	5503		26.693	0.62953	1	3787200			10355	6406	7046	7061	11886	11886					-0.07245873092574584
EEPAVSPSL	9	Unmodified	_EEPAVSPSL_					0	0	0			REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF	REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2686767578125	2	464.73474	927.454927	-0.20057	-9.3211E-05	2.1754	0.001011	1.9748	0.00091775	464.7354958122883	41.992	0.5494	41.86	41.565	42.115	-0.1322					36	15	3	0	0	0	0.023596	1	3832	3832		35.618	0	1	582250	+		10356	34671	7047	7062	11887	11887					-0.011702179559961223
EEPDPLPDN	9	Unmodified	_EEPDPLPDN_					0	0	0		ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2955932617188	2	513.224736	1024.43492	-0.22898	-0.00011752	4.1692	0.0021397	3.9402	0.0020222	513.2268230803095	65.719	0.20596	65.446	65.362	65.568	-0.27282					8	5	2	0	0	0	0.024523	1	7760	7760		15.642	0	1	82464			10357	9623	7048	7063	11888	11888					-0.07632013686611572
EEPEEQPVE	9	Unmodified	_EEPEEQPVE_					0	0	0			REV__ENST00000579222.1_1_17:62078371-62078671:+|nuORF	REV__ENST00000579222.1_1_17:62078371-62078671:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3189697265625	2	543.235301	1084.45605	-0.43425	-0.0002359	0.55483	0.0003014	0.12058	6.5505E-05	543.2353196749854	59.284	0.87417	59.37	58.666	59.54	0.085682					34	23	2	0	0	0	0.024374	1	6707	6707		58.782	12.81	1	254840	+		10358	28857	7049	7064	11889	11889					-0.08280048377764615
EEPFHLVIK	9	Unmodified	_EEPFHLVIK_					0	0	0		ENST00000480058.5_1_6:4064966-4065116:+|nuORF	ENST00000480058.5_1_6:4064966-4065116:+|nuORF	ENST00000480058.5_1_6:4064966-4065116:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2772827148438	2	556.310949	1110.60735	0.85347	0.00047479	-0.18607	-0.00010351	0.6674	0.00037128	556.3104703642465	77.679	0.76149	77.436	77.148	77.909	-0.24232					39	17	3	0	0	0	0.024374	1	9258	9258		49.442	23.867	1	538600			10359	15186	7050	7065	11890	11890					0.05646602511410492
EEPFPSAVTI	10	Unmodified	_EEPFPSAVTI_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2750244140625	2	545.276772	1088.53899	-0.30267	-0.00016504	-4.3221	-0.0023568	-4.6248	-0.0025218	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.82838	1	9755	9755		58.782	2.0609	1	57394000			10360	6370	7051	7066	11891	11891					-0.0017368685910241766
EEPKIKLLQ	9	Unmodified	_EEPKIKLLQ_					0	0	0			REV__ENST00000380591.7_1_5:72801034-72801127:+|nuORF	REV__ENST00000380591.7_1_5:72801034-72801127:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.7985229492188	2	549.331882	1096.64921	-0.90444	-0.00049684	2.8357	0.0015578	1.9313	0.0010609	549.3319160657217	21.921	0.194	21.921	21.771	21.965	0					5	3	2	0	0	0	0.024541	1	708	708		26.693	0	1	11376	+		10361	31483	7052	7067	11892	11892					0.10475158199960788
EEPLHGSIW	9	Unmodified	_EEPLHGSIW_					0	0	0			REV__ENST00000336735.8_1_14:81943183-81943309:-|nuORF	REV__ENST00000336735.8_1_14:81943183-81943309:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7818603515625	2	534.261456	1066.50836	-0.50931	-0.00027211	1.1061	0.00059096	0.59682	0.00031886	534.2613863055612	41.252	0.5036	41.117	40.791	41.294	-0.13554					29	12	3	0	0	0	0.024436	1	3590	3590		47.916	20.033	1	218050	+		10362	30550	7053	7068	11893	11893					-0.022234204534925084
EEPLHGSIW	9	Unmodified	_EEPLHGSIW_					0	0	0			REV__ENST00000336735.8_1_14:81943183-81943309:-|nuORF	REV__ENST00000336735.8_1_14:81943183-81943309:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7820434570312	2	534.261456	1066.50836	-0.6262	-0.00033455	-2.2336	-0.0011933	-2.8598	-0.0015279	534.2601554724777	40.848	0.60299	40.62	40.403	41.006	-0.2278					22	15	2	0	0	0	0.024436	1	3617	3617		47.916	12.297	1	288410	+		10363	30550	7053	7068	11894	11894					-0.022234204534925084
EEPLHGSIW	9	Unmodified	_EEPLHGSIW_					0	0	0			REV__ENST00000336735.8_1_14:81943183-81943309:-|nuORF	REV__ENST00000336735.8_1_14:81943183-81943309:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7820434570312	2	534.261456	1066.50836	-0.8638	-0.00046149	1.0709	0.00057215	0.20713	0.00011066	534.2621337441301	41.538	0.50568	41.308	41.003	41.508	-0.23029					17	12	2	0	0	0	0.024436	1	3616	3616		38.806	5.9937	1	164630	+		10364	30550	7053	7068	11895	11895					-0.022234204534925084
EEPLQNIDQI	10	Unmodified	_EEPLQNIDQI_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.2041015625	3	400.203187	1197.58773	0.13073	5.2317E-05	2.2803	0.00091258	2.411	0.0009649	400.203701291754	25.724	1.2487	25.497	24.708	25.957	-0.22683					82	29	5	0	0	0	0.64214	2	1224	1224;1249		72.243	25.786	1	3056700	+		10365	25917	7054	7069	11896;11897	11896					-0.0031581829000515427
EEPLQNIDQI	10	Unmodified	_EEPLQNIDQI_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.2037658691406	3	400.203187	1197.58773	0.98914	0.00039586	1.5496	0.00062014	2.5387	0.001016	400.2034406610213	25.485	0.90241	25.314	24.869	25.771	-0.17078					75	21	6	0	0	0	0.78327	1	1186	1186		61.765	6.6806	1	2853700	+		10366	25917	7054	7069	11898	11898					-0.0031581829000515427
EEPLQNIDQI	10	Unmodified	_EEPLQNIDQI_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.2041015625	3	400.203187	1197.58773	-0.47048	-0.00018829	2.77	0.0011086	2.2995	0.00092028	400.2039213341699	25.548	0.86431	25.377	24.993	25.857	-0.17151					53	20	3	0	0	0	1.0007	1	1169	1169		45.908	4.4815	1	3153800	+		10367	25917	7054	7069	11899	11899					-0.0031581829000515427
EEPNGIVDTI	10	Unmodified	_EEPNGIVDTI_					0	0	0			REV__nc|ENSG00000108604|Q92925-3|SMARCD2	REV__nc|ENSG00000108604|Q92925-3|SMARCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.79638671875	2	543.769311	1085.52407	-1.3855	-0.00075338	2.3757	0.0012918	0.99022	0.00053845	543.7704013585925	40.476	0.53111	40.499	40.199	40.73	0.023006					23	14	2	0	0	0	0.03519	1	3464	3464		51.193	11.94	1	210430	+		10368	21753	7055	7070	11900	11900					-0.015271787270876303
EEPSNAIEY	9	Unmodified	_EEPSNAIEY_					0	0	0			REV__nc|ENSG00000175793|P31947-2|SFN	REV__nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2322387695312	2	526.232561	1050.45057	-0.064158	-3.3762E-05	1.4079	0.0007409	1.3438	0.00070713	526.2331110464029	50.275	0.56525	50.17	49.856	50.422	-0.10558					46	14	5	0	0	0	0.53979	1	5102	5102		56.721	0	1	2307400	+		10369	26974	7056	7071	11901	11901					-0.07263727169583944
EEPSNAIEY	9	Unmodified	_EEPSNAIEY_					0	0	0			REV__nc|ENSG00000175793|P31947-2|SFN	REV__nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2322998046875	2	526.232561	1050.45057	0.35514	0.00018688	0.7717	0.0004061	1.1268	0.00059298	526.2328647722571	50.397	0.52546	50.217	49.901	50.426	-0.18071					32	13	3	0	0	0	0.42604	1	5118	5118		64.207	0.901	1	2170800	+		10370	26974	7056	7071	11902	11902					-0.07263727169583944
EEPSPGAPK	9	Unmodified	_EEPSPGAPK_					0	0	0		ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.78057861328125	2	456.227082	910.439611	-0.093085	-4.2468E-05	0.30514	0.00013921	0.21205	9.6744E-05	456.2271151383157	49.284	0.50214	49.131	48.864	49.366	-0.15277					23	13	2	0	0	0	0.023454	1	5081	5081		52.937	27.363	1	113330			10371	17095	7057	7072	11903	11903					-0.019190847531831423
EEPSPGAPK	9	Unmodified	_EEPSPGAPK_					0	0	0		ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.781005859375	2	456.227082	910.439611	-0.79354	-0.00036203	0.44142	0.00020139	-0.35212	-0.00016065	456.22717105830276	48.99	0.50716	49.065	48.772	49.279	0.074196					19	13	2	0	0	0	0.024447	1	4991	4991		32.812	17.171	1	109500			10372	17095	7057	7072	11904	11904					-0.019190847531831423
EEPSPPASH	9	Unmodified	_EEPSPPASH_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.784912109375	2	475.714339	949.414125	-0.19503	-9.2778E-05	0.27141	0.00012911	0.076383	3.6337E-05	475.71431772850843	34.483	0.52226	34.276	34.043	34.565	-0.20696					24	12	4	0	0	0	0.024436	1	2549	2549		23.042	2.0956	1	262880	+		10373	28304	7058	7073	11905	11905					-0.06260559275619926
EEPVLNLEI	9	Unmodified	_EEPVLNLEI_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2843627929688	2	528.284597	1054.55464	-0.43275	-0.00022861	-0.11052	-5.8386E-05	-0.54327	-0.000287	528.2845244630541	87.175	2.0473	87.175	85.956	88.003	0					100	48	4	0	0	0	0.14024	1	10977	10977		101.6	0	1	11263000	+		10374	28945	7059	7074	11906	11906					0.029545996579372513
EEPVLNLEI	9	Unmodified	_EEPVLNLEI_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2845458984375	2	528.284597	1054.55464	-0.057071	-3.015E-05	-0.47364	-0.00025022	-0.53071	-0.00028037	528.2843094792337	87.168	2.4173	87.132	85.503	87.921	-0.035355					112	57	4	0	0	0	0.14024	1	10908	10908		101.6	5.7855	1	11322000	+		10375	28945	7059	7074	11907	11907					0.029545996579372513
EEPVLNLEI	9	Unmodified	_EEPVLNLEI_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2841186523438	2	528.284597	1054.55464	0.65879	0.00034803	-1.1992	-0.00063351	-0.54039	-0.00028548	528.2839205294782	87.138	1.9313	87.159	85.942	87.873	0.021263					103	45	4	0	0	0	0.14024	2	10888	10888;10901		101.6	5.7855	1	11231000	+		10376	28945	7059	7074	11908;11909	11908					0.029545996579372513
EEQLFHKEL	9	Unmodified	_EEQLFHKEL_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	586.7984619140625	2	586.800946	1171.58734	-1.3452	-0.00078937	-2.3846	-0.0013993	-3.7298	-0.0021887	586.7994227630744	36.581	1.0068	36.581	36.298	37.305	0					67	26	4	0	0	0	0.15366	1	2925	2925		98.629	5.4861	1	2811000	+		10377	20541	7060	7075	11910	11910					0.008408067808204578
EEQLFHKEL	9	Unmodified	_EEQLFHKEL_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	586.799072265625	2	586.800946	1171.58734	-1.7234	-0.0010113	-1.9138	-0.001123	-3.6372	-0.0021343	586.7996713088493	36.412	0.7855	36.37	36.101	36.887	-0.042454					57	20	4	0	0	0	0.16468	1	2878	2878		96.19	13.44	1	2992600	+		10378	20541	7060	7075	11911	11911					0.008408067808204578
EEQLFHKEL	9	Unmodified	_EEQLFHKEL_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	586.7989501953125	2	586.800946	1171.58734	0.24318	0.0001427	-3.748	-0.0021993	-3.5048	-0.0020566	586.798638498941	36.522	0.77384	36.56	36.267	37.041	0.038044					58	20	4	0	0	0	0.15366	1	2858	2858		98.629	12.768	1	2957700	+		10379	20541	7060	7075	11912	11912					0.008408067808204578
EEQLFHKEL	9	Unmodified	_EEQLFHKEL_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	586.800946	1171.58734	-1.3452	-0.00078937	-2.3846	-0.0013993	-3.7298	-0.0021887	586.7994227630744	36.581	1.0068	36.581	36.298	37.305	0	0.077444	0.00047878	NaN	98.629	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2811000	+		10380	20541	7060	7075							0.008408067808204578
EEQLFHKEL	9	Unmodified	_EEQLFHKEL_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	586.800946	1171.58734	-1.7234	-0.0010113	-1.9138	-0.001123	-3.6372	-0.0021343	586.7996713088493	36.412	0.7855	36.37	36.101	36.887	-0.042454	-0.1339	0.0010314	NaN	98.629	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2992600	+		10381	20541	7060	7075							0.008408067808204578
EEQLFHKEL	9	Unmodified	_EEQLFHKEL_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	586.800946	1171.58734	0.24318	0.0001427	-3.748	-0.0021993	-3.5048	-0.0020566	586.798638498941	36.522	0.77384	36.56	36.267	37.041	0.038044	0.056454	-0.0011212	NaN	98.629	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2957700	+		10382	20541	7060	7075							0.008408067808204578
EEQLPLRA	8	Unmodified	_EEQLPLRA_					0	0	0		SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant;nc|ENSG00000104611|Q9H788-2|SH2D4A;ENSG00000104611|ENST00000265807|SH2D4A	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.8118591308594	2	478.263999	954.513445	0.41749	0.00019967	-0.10886	-5.2064E-05	0.30863	0.00014761	478.26379930492305	57.184	0.78635	57.184	56.745	57.532	0					36	21	2	0	0	0	0.027866	1	6454	6454		34.173	5.023	1	534500			10383	2582	7061	7076	11913	11913					0.03436883409131042
EEQLPLRA	8	Unmodified	_EEQLPLRA_					0	0	0		SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant;nc|ENSG00000104611|Q9H788-2|SH2D4A;ENSG00000104611|ENST00000265807|SH2D4A	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.263999	954.513445	-0.11894	-5.6886E-05	0.085853	4.106E-05	-0.033089	-1.5825E-05	478.26403774235996	56.985	0.74304	57.081	56.649	57.392	0.095306	-0.051854	8.2337E-05	NaN	42.396	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510160			10384	2582	7061	7076							0.03436883409131042
EEQLRELL	8	Unmodified	_EEQLRELL_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1;ENST00000596902.1_1_19:44005819-44008744:-|nuORF;nc|ENSG00000176531|Q6NSJ2-2|PHLDB3;ENSG00000176531|ENST00000292140|PHLDB3	nc|ENSG00000100425|O95696|BRD1;nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	nc|ENSG00000100425|O95696|BRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7901000976562	2	515.282389	1028.55022	0.36889	0.00019008	0.57453	0.00029605	0.94342	0.00048613	515.7847702190918	52.545	0.24306	52.398	52.326	52.569	-0.14723					9	5	2	0	0	0	0.027866	1	5605	5605		55.504	0	1	181580			10385	2201;8645	7062	7077	11914	11914					0.03709135235044414
EEQMRREEERR	11	Unmodified	_EEQMRREEERR_					0	0	0		nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant	nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.818603515625	3	516.582955	1546.72704	0.20699	0.00010693	-2.7813	-0.0014368	-2.5743	-0.0013298	516.9157765208599	21.551	0.38098	21.374	21.162	21.543	-0.17721					10	7	2	0	0	0	0.024735	1	684	684		16.53	4.5975	1	21299			10386	6402	7063	7078	11915	11915					-0.024458039443061352
EEQPQVQQEEV	11	Unmodified	_EEQPQVQQEEV_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2093505859375	3	448.208889	1341.60484	-0.90239	-0.00040446	1.4535	0.00065148	0.55113	0.00024702	448.2094420805243	41.1	0.87962	40.87	40.554	41.434	-0.23029					53	22	3	0	0	0	0.75915	1	3593	3593		60.167	5.0831	1	1639600			10387	9804	7064	7079	11916	11916					-0.05229942474852578
EEQPQVQQEEV	11	Unmodified	_EEQPQVQQEEV_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	448.208889	1341.60484	0.29241	0.00013106	0.4919	0.00022047	0.78431	0.00035154	448.20894361954254	40.674	0.808	40.674	40.381	41.189	0	-0.090901	-0.00027183	NaN	60.167	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1260400			10388	9804	7064	7079							-0.05229942474852578
EEQPQVQQEEV	11	Unmodified	_EEQPQVQQEEV_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	448.208889	1341.60484	0.95305	0.00042716	-0.45153	-0.00020238	0.50152	0.00022478	448.20849983572356	40.827	0.6788	40.704	40.407	41.086	-0.12318	-0.060647	-0.0015404	NaN	60.167	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	894220			10389	9804	7064	7079							-0.05229942474852578
EEQPQVQQEEV	11	Unmodified	_EEQPQVQQEEV_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	448.208889	1341.60484	-0.25451	-0.00011407	0.7117	0.00031899	0.4572	0.00020492	448.2091150748061	40.829	0.6611	40.852	40.629	41.29	0.023003	0.087127	2.3722E-05	NaN	60.167	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1067700			10390	9804	7064	7079							-0.05229942474852578
EEQPQVQQEEV	11	Unmodified	_EEQPQVQQEEV_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	448.208889	1341.60484	-0.30932	-0.00013864	1.001	0.00044868	0.69173	0.00031004	448.2092216917008	40.813	0.71935	40.678	40.418	41.137	-0.13553	-0.086931	0.00041278	NaN	60.167	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1332900			10391	9804	7064	7079							-0.05229942474852578
EEQPQVQQEEV	11	Unmodified	_EEQPQVQQEEV_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	448.208889	1341.60484	-0.23715	-0.00010629	0.6845	0.0003068	0.44736	0.00020051	448.20917185764466	41.038	0.73122	40.811	40.544	41.275	-0.2278	0.046024	-1.2854E-05	NaN	60.167	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1252200			10392	9804	7064	7079							-0.05229942474852578
EEQRFQIMF	9	Oxidation (M)	_EEQRFQIM(Oxidation (M))F_		EEQRFQIM(1)F		EEQRFQIM(60)F	0	0	1			REV__OTOGL|p.V1994F|1|0.24|ENSG00000165899|chr12:80358271-80358271|G/T|missense_variant	REV__OTOGL|p.V1994F|1|0.24|ENSG00000165899|chr12:80358271-80358271|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.1986389160156	3	415.197379	1242.57031	0.57799	0.00023998	2.4128	0.0010018	2.9908	0.0012418	415.1985116223976	20.705	1.2291	20.509	20.138	21.367	-0.19577					61	24	4	0	0	0	0.48817	1	587	587		60.118	8.5905	1	1737200	+		10393	37341	7065	7080	11917	11917		985			-0.04127437096667563
EEQRFQIMF	9	Oxidation (M)	_EEQRFQIM(Oxidation (M))F_					0	0	1			REV__OTOGL|p.V1994F|1|0.24|ENSG00000165899|chr12:80358271-80358271|G/T|missense_variant	REV__OTOGL|p.V1994F|1|0.24|ENSG00000165899|chr12:80358271-80358271|G/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	415.197379	1242.57031	0.57799	0.00023998	2.4128	0.0010018	2.9908	0.0012418	415.1985116223976	20.705	1.2291	20.509	20.138	21.367	-0.19577	0.041807	-0.00054592	NaN	60.118	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1737200	+		10394	37341	7065	7080				985			-0.04127437096667563
EEQRVGSVI	9	Unmodified	_EEQRVGSVI_					0	0	0		nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.2766418457031	2	508.772188	1015.52982	-0.36652	-0.00018647	1.7749	0.00090304	1.4084	0.00071656	508.7719296100509	33.808	1.2357	33.803	33.178	34.414	-0.0045624					85	32	4	0	0	0	0.29158	1	2475	2475		76.774	3.8949	1	6076200			10395	9796	7066	7081	11918	11918					0.022679645752418764
EEQSWILI	8	Unmodified	_EEQSWILI_					0	0	0			REV__nc|ENSG00000134574|Q92466-4|DDB2	REV__nc|ENSG00000134574|Q92466-4|DDB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8037109375	2	509.266207	1016.51786	-0.22362	-0.00011388	-2.6113	-0.0013299	-2.835	-0.0014437	509.26476172159977	86.031	0.72369	85.986	85.656	86.38	-0.045105					32	16	3	0	0	0	0.027866	1	10815	10815		47.916	1.9636	1	141650	+		10396	36679	7067	7082	11919	11919					0.010263478320553077
EEQSWILI	8	Unmodified	_EEQSWILI_					0	0	0			REV__nc|ENSG00000134574|Q92466-4|DDB2	REV__nc|ENSG00000134574|Q92466-4|DDB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.266207	1016.51786	-1.0556	-0.00053758	-2.5719	-0.0013098	-3.6275	-0.0018474	509.26511310338446	85.922	0.72179	85.945	85.697	86.419	0.023666	-0.020063	1.2635E-05	NaN	30.504	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121120	+		10397	36679	7067	7082							0.010263478320553077
EEQTRVALL	9	Unmodified	_EEQTRVALL_					0	0	0		ENSG00000138180|ENST00000371485|CEP55;nc|ENSG00000138180|Q53EZ4-2|CEP55;ENST00000496302.1_1_10:95278654-95279576:+|nuORF	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2899169921875	2	529.795663	1057.57677	-0.16739	-8.868E-05	4.1174	0.0021814	3.95	0.0020927	529.7974232259369	86.941	0.63402	86.906	86.476	87.11	-0.035362					36	14	4	0	0	0	0.024021	1	10835	10835		68.787	6.6794	1	385600			10398	5216	7068	7083	11920	11920					0.05028824126384279
EEQVQQPDQ	9	Unmodified	_EEQVQQPDQ_					0	0	0			REV__ENST00000465930.1_1_2:98744784-98750261:+|nuORF	REV__ENST00000465930.1_1_2:98744784-98750261:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2890014648438	2	550.746367	1099.47818	-1.1032	-0.0006076	1.8784	0.0010345	0.77514	0.0004269	550.747176748077	45.213	0.34803	45.064	44.866	45.214	-0.1488					15	9	2	0	0	0	0.024319	1	4360	4360		66.429	2.222	1	128910	+		10399	33018	7069	7084	11921	11921					-0.06757823909333638
EEQVQQPDQ	9	Unmodified	_EEQVQQPDQ_					0	0	0			REV__ENST00000465930.1_1_2:98744784-98750261:+|nuORF	REV__ENST00000465930.1_1_2:98744784-98750261:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.746367	1099.47818	-0.74826	-0.0004121	1.4205	0.00078236	0.67229	0.00037026	550.7467966302634	45.063	0.35325	45.063	44.827	45.181	0	-0.00080085	-0.00018904	NaN	56.721	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88581	+		10400	33018	7069	7084							-0.06757823909333638
EERALLREA	9	Unmodified	_EERALLREA_					0	0	0		ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	ENSG00000165804|ENST00000360947|ZNF219	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.78271484375	2	543.798737	1085.58292	-1.527	-0.0008304	0.56949	0.00030969	-0.95755	-0.00052071	543.7992309487504	38.422	0.48077	38.422	38.199	38.68	0					26	12	3	0	0	0	0.024397	1	3253	3253		39.253	17.567	1	422440			10401	7468	7070	7085	11922	11922					0.043553423578941874
EERAQKRSV	9	Unmodified	_EERAQKRSV_					0	0	0			REV__ENSG00000149929|ENST00000279392|HIRIP3	REV__ENSG00000149929|ENST00000279392|HIRIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3245239257812	2	551.801811	1101.58907	0.93377	0.00051525	-1.47	-0.00081115	-0.53624	-0.0002959	551.8007405727601	19.828	0.49436	19.628	19.355	19.85	-0.2001					12	9	2	0	0	0	0.024539	1	490	490		27.882	4.3595	1	27734	+		10402	24706	7071	7086	11923	11923					0.042338605894201464
EERAQKRSV	9	Unmodified	_EERAQKRSV_					0	0	0			REV__ENSG00000149929|ENST00000279392|HIRIP3	REV__ENSG00000149929|ENST00000279392|HIRIP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	551.801811	1101.58907	0.8088	0.0004463	-1.6782	-0.00092602	-0.86937	-0.00047972	551.8007005904013	19.879	0.3455	19.645	19.424	19.769	-0.23345	0.0086634	-3.066E-05	NaN	44.117	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36433	+		10403	24706	7071	7086							0.042338605894201464
EERASLRGPL	10	Unmodified	_EERASLRGPL_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.2886962890625	2	564.312012	1126.60947	0.40132	0.00022647	-2.5327	-0.0014292	-2.1314	-0.0012028	564.3106396337906	72.401	0.91275	72.12	71.92	72.832	-0.28124					41	22	3	0	0	0	0.03519	1	8771	8771		32.751	7.6245	1	466170			10404	11958	7072	7087	11924	11924					0.05123031249240739
EERASLRGPL	10	Unmodified	_EERASLRGPL_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.312012	1126.60947	0.038457	2.1701E-05	-1.2938	-0.00073013	-1.2554	-0.00070843	564.3113971029817	72.04	1.0357	72.04	71.831	72.867	0	-0.05869	0.0012154	NaN	32.751	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475900			10405	11958	7072	7087							0.05123031249240739
EERASLRGPL	10	Unmodified	_EERASLRGPL_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.312012	1126.60947	0.051005	2.8783E-05	-2.4858	-0.0014028	-2.4348	-0.001374	564.3105755246055	72.126	0.89931	72.136	71.878	72.777	0.0097733	0.037324	-0.00012995	NaN	32.751	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668440			10406	11958	7072	7087							0.05123031249240739
EERGGGEDTWQ	11	Unmodified	_EERGGGEDTWQ_					0	0	0		ENST00000554170.1_1_14:104177876-104180529:-|nuORF	ENST00000554170.1_1_14:104177876-104180529:-|nuORF	ENST00000554170.1_1_14:104177876-104180529:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.8461608886719	3	421.846063	1262.51636	-0.097444	-4.1106E-05	0.18794	7.9283E-05	0.090498	3.8176E-05	421.84648922159715	33.295	2.6754	33.095	32.771	35.447	-0.20019					172	67	7	0	0	0	1.0259	1	2400	2400		31.068	0	1	17150000			10407	16651	7073	7088	11925	11925					-0.10439937994647153
EERHLLIL	8	Unmodified	_EERHLLIL_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MSMS	OPSCC_40_ClassI_Rep-1	4	511.80322265625	2	511.803291	1021.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.754	1	18.598	18.098	19.098	-0.15637								0	0	0	0.68408	1	342	342		42.474	1.9018	1		+		10408	23131	7074	7089	11926	11926					0.08209735714251565
EERLENVKL	9	Unmodified	_EERLENVKL_					0	0	0			REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.31640625	2	565.31422	1128.61389	-0.15064	-8.5161E-05	3.7028	0.0020932	3.5521	0.0020081	565.3162646410173	95	1.208	95.004	94.564	95.772	0.0033722					76	27	4	0	0	0	0.26966	1	12076	12076		79.713	2.9384	1	2159100	+		10409	21511	7075	7090	11927	11927					0.05472495672142941
EERLKEVVLVR	11	Unmodified	_EERLKEVVLVR_					0	0	0			REV__ENST00000503159.1_1_4:87856958-87857279:-|nuORF	REV__ENST00000503159.1_1_4:87856958-87857279:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2769775390625	3	457.276909	1368.8089	0.39399	0.00018016	-1.6419	-0.00075078	-1.2479	-0.00057062	457.27588496507224	103.38	0.6664	103.25	102.98	103.65	-0.12724					40	15	3	0	0	0	1.0621	1	12862	12862		21.78	6.4429	1	588880	+		10410	33949	7076	7091	11928	11928					0.13924666477123537
EERLRRLL	8	Unmodified	_EERLRRLL_					0	0	0		nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8349609375	2	542.832914	1083.65128	0.26753	0.00014523	3.1452	0.0017073	3.4127	0.0018525	542.834505528044	70.725	0.36531	70.432	70.263	70.629	-0.29292					21	8	3	0	0	0	1.0516	1	8516	8516		29.15	2.3535	1	1997700			10411	8168	7077	7092	11929	11929					0.11279631728439199
EERLYQYKI	9	Unmodified	_EERLYQYKI_					0	0	0			REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.3294677734375	2	621.32987	1240.64519	-0.78976	-0.0004907	0.80636	0.00050102	0.016608	1.0319E-05	621.3302180345989	45.585	0.77791	45.629	45.311	46.088	0.043877					67	22	4	0	0	0	0.1158	1	4398	4398		107.01	2.9939	1	5387200	+		10412	27477	7078	7093	11930	11930					0.03449068706231628
EERNALILQSA	11	Unmodified	_EERNALILQSA_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3361206054688	2	622.335684	1242.65681	0.2866	0.00017836	1.052	0.0006547	1.3386	0.00083306	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.0465	1	13555	13555		26.063	1.5442	1	1619900			10413	8503	7079	7094	11931	11931					0.04519265729595645
EERNCERLY	9	Unmodified	_EERNCERLY_					0	0	0			REV__nc|ENSG00000143322|P42684-4|ABL2	REV__nc|ENSG00000143322|P42684-4|ABL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	606.8804931640625	2	606.277312	1210.54007	-1.4071	-0.00085312	-3.8775	-0.0023508	-5.2847	-0.003204	606.2747757668512	26.687	0.32194	26.451	26.341	26.663	-0.23603					12	7	2	0	0	0	0.024367	1	1393	1393		21.96	0	1	57201	+		10414	24225	7080	7095	11932	11932					-0.05677795761835114
EERPKTKA	8	Unmodified	_EERPKTKA_					0	0	0			REV__nc|ENSG00000211893|P01859-1|IGHG2	REV__nc|ENSG00000211893|P01859-1|IGHG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.73126220703125	2	479.769448	957.524344	0.045416	2.1789E-05	-1.1428	-0.00054828	-1.0974	-0.00052649	479.76878828837516	32.257	0.98455	32.257	31.509	32.494	0					37	24	3	0	0	0	0.027866	1	2107	2107		68.787	29.534	1	321890	+		10415	37119	7081	7096	11933	11933					0.04388285783431911
EERRKTLS	8	Unmodified	_EERRKTLS_					0	0	0		ENSG00000160072|ENST00000673477|ATAD3B;ATAD3A|p.R534Efs*5|1|0.18|ENSG00000197785|chr1:1527811-1527812|-/G|frameshift_variant;nc|ENSG00000197785|Q9NVI7-3|ATAD3A;ENSG00000197785|ENST00000378756|ATAD3A;nc|ENSG00000160072|Q5T9A4-3|ATAD3B;ENST00000472194.6_1_1:1413873-1431194:+|nuORF;nc|ENSG00000197785|Q9NVI7|ATAD3A	ENSG00000160072|ENST00000673477|ATAD3B	ENSG00000160072|ENST00000673477|ATAD3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.80316162109375	2	509.78563	1017.55671	-0.079792	-4.0677E-05	-0.96945	-0.00049421	-1.0492	-0.00053489	510.2879558204941	87.203	0.7935	87.024	86.862	87.656	-0.17874					19	17	2	0	0	0	0.027866	1	10577	10577		18.324	0	1	70206			10416	6778	7082	7097	11934	11934					0.048630731864250265
EERSAAETPP	10	Unmodified	_EERSAAETPP_					0	0	0			REV__nc|ENSG00000099864|O75781-2|PALM	REV__nc|ENSG00000099864|O75781-2|PALM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.793212890625	2	543.756735	1085.49892	-1.8275	-0.00099372	-0.48868	-0.00026572	-2.3162	-0.0012594	543.7561166546257	33.957	0.5432	33.782	33.507	34.05	-0.17557					31	13	3	0	0	0	0.03519	1	2483	2483		31.53	10.583	1	112370	+		10417	21015	7083	7098	11935	11935					-0.04041233529665078
EERSAAETPP	10	Unmodified	_EERSAAETPP_					0	0	0			REV__nc|ENSG00000099864|O75781-2|PALM	REV__nc|ENSG00000099864|O75781-2|PALM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.756735	1085.49892	-0.34546	-0.00018784	-0.72014	-0.00039158	-1.0656	-0.00057942	543.7555555455333	34.095	0.69611	33.871	33.522	34.219	-0.22412	0.056447	-0.00011497	NaN	39.253	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143650	+		10418	21015	7083	7098							-0.04041233529665078
EERSAAETPP	10	Unmodified	_EERSAAETPP_					0	0	0			REV__nc|ENSG00000099864|O75781-2|PALM	REV__nc|ENSG00000099864|O75781-2|PALM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.756735	1085.49892	-0.49142	-0.00026721	-0.65296	-0.00035505	-1.1444	-0.00062226	543.7560725092827	33.997	0.38247	33.79	33.549	33.931	-0.20695	-0.02417	-4.1915E-05	NaN	39.253	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141280	+		10419	21015	7083	7098							-0.04041233529665078
EESGVPIKNY	10	Unmodified	_EESGVPIKNY_					0	0	0			REV__nc|ENSG00000134812|P27352-2|CBLIF	REV__nc|ENSG00000134812|P27352-2|CBLIF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.81103515625	2	568.285128	1134.5557	-0.078667	-4.4705E-05	2.2705	0.0012903	2.1918	0.0012456	568.2864996508114	69.012	0.81863	68.781	68.48	69.299	-0.23048					29	19	2	0	0	0	0.03519	1	8040	8040		31.53	0	1	897300	+		10420	23483	7084	7099	11936	11936					-0.006191859731416116
EESISTLISQ	10	Unmodified	_EESISTLISQ_					0	0	0		ENSG00000173163|ENST00000311832|COMMD1	ENSG00000173163|ENST00000311832|COMMD1	ENSG00000173163|ENST00000311832|COMMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3051147460938	2	553.782418	1105.55028	-1.2319	-0.00068223	3.8319	0.002122	2.6	0.0014398	553.784342565571	43.908	0.21141	43.763	43.569	43.781	-0.14471					6	5	2	0	0	0	0.03519	1	4108	4108		49.536	0	1	165530			10421	8346	7085	7100	11937	11937					0.00173090444400259
EESLLTPTSP	10	Unmodified	_EESLLTPTSP_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7381591796875	2	537.271687	1072.52882	-0.54409	-0.00029233	2.8477	0.00153	2.3036	0.0012377	537.272975901922	17.348	0.302	17.141	16.963	17.265	-0.20669					10	5	2	0	0	0	0.03519	1	173	173		23.042	1.0826	1	37857			10422	9914	7086	7101	11938	11938					-0.00454294584346826
EESQWPSTL	9	Unmodified	_EESQWPSTL_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7932739257812	2	538.748379	1075.4822	-0.43642	-0.00023512	-2.2857	-0.0012314	-2.7221	-0.0014665	538.7470899180812	24.974	0.39568	25.053	24.777	25.173	0.078344					13	8	2	0	0	0	0.024418	1	1074	1074		54.776	28.083	1	32281	+		10423	25603	7087	7102	11939	11939					-0.05251734415605824
EESRNKMAT	9	Unmodified	_EESRNKMAT_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7924194335938	2	533.253305	1064.49206	-0.80129	-0.00042729	0.64357	0.00034318	-0.15772	-8.4106E-05	533.2556917677108	45.212	0.50639	44.96	44.549	45.055	-0.25252					16	12	2	0	0	0	0.024374	1	4198	4198		13.454	0	1	127550			10424	17178	7088	7103	11940	11940					-0.03760869681877921
EESVSASQKAI	11	Unmodified	_EESVSASQKAI_					0	0	0		ENSG00000176746|ENST00000379034|MAGEB6	ENSG00000176746|ENST00000379034|MAGEB6	ENSG00000176746|ENST00000379034|MAGEB6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.310791015625	2	574.793318	1147.57208	-1.6072	-0.00092382	-1.5025	-0.0008636	-3.1097	-0.0017874	575.2952183976723	60.721	0.19155	60.8	60.647	60.839	0.078888					5	4	2	0	0	0	0.024812	1	6916	6916		67.494	3.2864	1	26181			10425	8666	7089	7104	11941	11941					0.004198951929765826
EETDKLIF	8	Unmodified	_EETDKLIF_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7590637207031	2	497.758215	993.501877	-1.6707	-0.00083161	2.9096	0.0014483	1.2389	0.00061666	497.7595527982125	60.283	1.4285	60.362	59.974	61.402	0.078884					114	37	4	0	0	0	0.68535	1	6822	6822		68.485	5.1784	1	6635200	+		10426	25739	7090	7105	11942	11942					0.00486641595148285
EETFKPSSV	9	Unmodified	_EETFKPSSV_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7879638671875	2	512.253297	1022.49204	-0.10119	-5.1837E-05	0.14123	7.2344E-05	0.040033	2.0507E-05	512.2530395140378	71.124	0.92114	70.867	70.564	71.485	-0.25713					33	21	3	0	0	0	0.0242	1	8322	8322		79.713	20.931	1	520590			10427	7034	7091	7106	11943	11943					-0.018305464102354563
EETGSFNL	8	Unmodified	_EETGSFNL_					0	0	0			REV__nc|ENSG00000100150|O75140-5|DEPDC5	REV__nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.7535095214844	2	448.70344	895.392327	-0.58403	-0.00026205	3.7017	0.0016609	3.1176	0.0013989	448.70536772941693	39.35	0.73834	39.251	38.843	39.582	-0.098755					27	20	2	0	0	0	0.027866	1	3388	3388		25.45	13.243	1	254560	+		10428	21055	7092	7107	11944	11944					-0.059553640241801986
EETGSFNL	8	Unmodified	_EETGSFNL_					0	0	0			REV__nc|ENSG00000100150|O75140-5|DEPDC5	REV__nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	448.70344	895.392327	-0.43241	-0.00019402	4.0383	0.001812	3.6059	0.001618	448.705188233154	39.597	0.54835	39.374	39.111	39.66	-0.22311	0.10796	0.00015053	NaN	33.516	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115750	+		10429	21055	7092	7107							-0.059553640241801986
EETGSFNL	8	Unmodified	_EETGSFNL_					0	0	0			REV__nc|ENSG00000100150|O75140-5|DEPDC5	REV__nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	448.70344	895.392327	-0.022704	-1.0187E-05	3.7857	0.0016986	3.763	0.0016885	448.70501241379964	39.398	0.52459	39.173	38.909	39.433	-0.2257	-0.093266	-7.6159E-05	NaN	33.516	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147530	+		10430	21055	7092	7107							-0.059553640241801986
EETQPPMAL	9	Unmodified	_EETQPPMAL_					0	0	0		ENST00000396021.2_1_X:68003520-68004069:+|nuORF	ENST00000396021.2_1_X:68003520-68004069:+|nuORF	ENST00000396021.2_1_X:68003520-68004069:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2916259765625	2	508.241875	1014.4692	-0.61635	-0.00031325	4.3892	0.0022308	3.7728	0.0019175	508.2441291640657	50.509	0.3003	50.509	50.341	50.642	0					10	8	2	0	0	0	0.024405	1	5275	5275		53.351	12.779	1	56079			10431	13540	7093	7108	11945	11945					-0.03745888799369368
EEVAKSVVY	9	Unmodified	_EEVAKSVVY_					0	0	0			REV__ENST00000608891.1_1_6:88068830-88075111:+|nuORF	REV__ENST00000608891.1_1_6:88068830-88075111:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.7714233398438	2	512.27149	1022.52843	0.51992	0.00026634	-1.4352	-0.00073523	-0.91531	-0.00046889	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	0.92825	1	13736	13736		30.504	0	1	6752000	+		10432	35974	7094	7109	11946	11946					0.018063304864767815
EEVGRVLFLIS	11	Unmodified	_EEVGRVLFLIS_					0	0	0		ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	631.3603515625	2	631.36117	1260.70779	-0.54025	-0.00034109	1.3098	0.00082694	0.76953	0.00048585	631.3617539583471	66.652	0.81265	66.682	66.463	67.276	0.030106					48	19	3	0	0	0	0.87847	1	7844	7844		52.937	5.2794	1	1422600			10433	5735	7095	7110	11947	11947					0.08786214774431755
EEVHGTSGSF	10	Unmodified	_EEVHGTSGSF_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7771606445312	2	525.230353	1048.44615	-0.59283	-0.00031137	1.3199	0.00069328	0.72712	0.0003819	525.2309332478297	49.674	0.47645	49.674	49.437	49.913	0					21	12	2	0	0	0	0.03519	1	5128	5128		49.442	8.8689	1	444500			10434	8336	7096	7111	11948	11948					-0.07613191592440671
EEVILILAP	9	Unmodified	_EEVILILAP_					0	0	0		ENSG00000255378|ENST00000528972|PRR23D2;ENSG00000255251|ENST00000533250|PRR23D1	ENSG00000255378|ENST00000528972|PRR23D2	ENSG00000255378|ENST00000528972|PRR23D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8011474609375	2	498.802426	995.590298	0.55677	0.00027772	-0.48627	-0.00024255	0.070501	3.5166E-05	498.80201120175064	99.681	0.4295	99.546	99.29	99.719	-0.13526					28	9	4	0	0	0	0.96855	1	12342	12342		26.796	0.10319	1	138710			10435	10890	7097	7112	11949	11949					0.09232681905609752
EEVKFELRAL	10	Unmodified	_EEVKFELRAL_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.9002380371094	3	411.899439	1232.67649	-0.34373	-0.00014158	1.49	0.00061374	1.1463	0.00047216	411.9000287976534	28.68	1.5036	28.528	28.203	29.707	-0.15195					75	35	4	0	0	0	1.0997	1	1693	1693		32.751	1.1163	1	1645200			10436	18480	7098	7113	11950	11950					0.06945641740321662
EEVKVSRPK	9	Unmodified	_EEVKVSRPK_					0	0	0			REV__ENSG00000102935|ENST00000563137|ZNF423	REV__ENSG00000102935|ENST00000563137|ZNF423	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.8081665039062	2	536.31148	1070.60841	-0.96041	-0.00051508	0.96675	0.00051848	0.0063319	3.3959E-06	536.3117351468705	31.956	0.51012	31.798	31.569	32.079	-0.15772					16	11	2	0	0	0	0.023093	1	2124	2124		72.879	1.0018	1	555410	+		10437	21342	7099	7114	11951	11951					0.07592816880332975
EEVLDRTDI	9	Unmodified	_EEVLDRTDI_					0	0	0		ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	ENSG00000108786|ENST00000585807|HSD17B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2761840820312	2	545.274761	1088.53497	-0.48422	-0.00026403	-0.41899	-0.00022847	-0.90322	-0.0004925	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.75397	1	9747	9747		42.396	5.9494	1	63206000			10438	2930	7100	7115	11952	11952					-0.005757763527981297
EEVLLLGL	8	Unmodified	_EEVLLLGL_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2665710449219	2	443.268219	884.521884	0.90858	0.00040275	-3.7013	-0.0016407	-2.7927	-0.0012379	443.2665079712088	85.712	1.1011	85.712	85.372	86.474	0					75	25	4	0	0	0	0.98906	1	10746	10746		39.021	1.993	1	1179100			10439	3288	7101	7116	11953	11953					0.07500437325757048
EEVLLLGL	8	Unmodified	_EEVLLLGL_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	443.268219	884.521884	0.0095454	4.2312E-06	-2.8041	-0.001243	-2.7946	-0.0012388	443.2668808099724	85.766	1.0554	85.708	85.355	86.411	-0.05761	-0.029123	0.000279	NaN	39.021	65	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1292400			10440	3288	7101	7116							0.07500437325757048
EEVLMIIN	8	Unmodified	_EEVLMIIN_					0	0	0			REV__nc|ENSG00000170390|Q8N568-2|DCLK2	REV__nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.24560546875	2	480.757161	959.499769	0.27535	0.00013238	-2.5865	-0.0012435	-2.3111	-0.0011111	480.7552804403365	61.221	1.1301	61.015	60.336	61.466	-0.20599					57	27	3	0	0	0	0.027866	1	6791	6791		47.916	1.9636	1	999500	+		10441	26466	7102	7117	11954	11954					0.018398895856876152
EEVLPLKNI	9	Unmodified	_EEVLPLKNI_					0	0	0		nc|ENSG00000134533|Q96A58-2|RERG;ENSG00000134533|ENST00000256953|RERG	nc|ENSG00000134533|Q96A58-2|RERG	nc|ENSG00000134533|Q96A58-2|RERG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3549194335938	2	527.810782	1053.60701	-0.2965	-0.0001565	0.042951	2.267E-05	-0.25355	-0.00013383	527.8108953496436	50.382	0.42764	50.231	50.065	50.493	-0.1512					17	12	2	0	0	0	0.024405	1	5261	5261		35.618	0	1	165300			10442	4806	7103	7118	11955	11955					0.08235182791577245
EEVLPLKNI	9	Unmodified	_EEVLPLKNI_					0	0	0		nc|ENSG00000134533|Q96A58-2|RERG;ENSG00000134533|ENST00000256953|RERG	nc|ENSG00000134533|Q96A58-2|RERG	nc|ENSG00000134533|Q96A58-2|RERG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3551635742188	2	527.810782	1053.60701	0.17113	9.0322E-05	-0.94426	-0.00049839	-0.77313	-0.00040807	527.8104083859249	50.074	0.2563	50.155	50.054	50.31	0.08099					14	7	2	0	0	0	0.024405	1	5172	5172		44.117	13.799	1	164440			10443	4806	7103	7118	11956	11956					0.08235182791577245
EEVPRQGAER	10	Unmodified	_EEVPRQGAER_					0	0	0			REV__ENSG00000122966|ENST00000392521|CIT	REV__ENSG00000122966|ENST00000392521|CIT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.761962890625	2	585.796726	1169.5789	-0.71839	-0.00042083	-1.6252	-0.00095206	-2.3436	-0.0013729	586.297037185354	76.533	0.34396	76.365	76.223	76.567	-0.16853					11	7	2	0	0	0	0.03519	1	9090	9090		53.089	19.573	1	111850	+		10444	22672	7104	7119	11957	11957					0.0008925286417706957
EEVTALSELPP	11	Unmodified	_EEVTALSELPP_					0	0	0			REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	592.8043823242188	2	592.805894	1183.59723	-1.3247	-0.00078527	-1.0417	-0.00061755	-2.3664	-0.0014028	592.8050930304668	26.125	1.4366	26.102	25.091	26.527	-0.023088					78	34	5	0	0	0	0.6558	1	1292	1292		66.429	11.653	1	2513300	+		10445	21539	7105	7120	11958	11958					0.012779499955286155
EEVTALSELPP	11	Unmodified	_EEVTALSELPP_					0	0	0			REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	592.805894	1183.59723	0.30106	0.00017847	-2.6847	-0.0015915	-2.3837	-0.0014131	592.8041857601709	25.82	0.8741	25.9	25.581	26.455	0.08009	-0.1208	-0.0014399	NaN	66.429	62	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2408200	+		10446	21539	7105	7120							0.012779499955286155
EEVTPAQGGIY	11	Unmodified	_EEVTPAQGGIY_					0	0	0		nc|ENSG00000170909|Q8IYS5-6|OSCAR;nc|ENSG00000170909|Q8IYS5-2|OSCAR;nc|ENSG00000170909|Q8IYS5-3|OSCAR;nc|ENSG00000170909|Q8IYS5-4|OSCAR;nc|ENSG00000170909|Q8IYS5-5|OSCAR;nc|ENSG00000170909|Q8IYS5|OSCAR;nc|ENSG00000170909|Q8IYS5-7|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.2860717773438	2	582.282586	1162.55062	0.45515	0.00026502	3.1647	0.0018427	3.6198	0.0021077	582.2842022291694	83.958	0.89286	83.746	83.393	84.286	-0.21159					59	20	4	0	0	0	0.51994	1	10145	10145		75.043	14.071	1	729570			10447	18509	7106	7121	11959	11959					-0.02415489835743756
EEVVLKINL	9	Unmodified	_EEVVLKINL_					0	0	0		OTX1|p.A72V|1|0.26|ENSG00000115507|chr2:63054164-63054164|C/T|missense_variant	OTX1|p.A72V|1|0.26|ENSG00000115507|chr2:63054164-63054164|C/T|missense_variant	OTX1|p.A72V|1|0.26|ENSG00000115507|chr2:63054164-63054164|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.3208618164062	2	528.818607	1055.62266	-0.0439	-2.3215E-05	0.66937	0.00035398	0.62547	0.00033076	528.8184520375157	82.894	0.9482	82.713	82.244	83.192	-0.18079					44	21	3	0	0	0	0.19099	1	9997	9997		90.37	16.115	1	359950			10448	18934	7107	7122	11960	11960					0.09707469308591499
EEVWKLVE	8	Unmodified	_EEVWKLVE_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7739868164062	2	516.274032	1030.53351	0.44826	0.00023143	-0.55387	-0.00028595	-0.10561	-5.4523E-05	516.2734853511885	68.529	0.92365	68.286	67.992	68.916	-0.24277					34	22	2	0	0	0	0.027866	1	7992	7992		55.504	0	1	1237900	+		10449	24228	7108	7123	11961	11961					0.01946634349087617
EEVYSFLL	8	Unmodified	_EEVYSFLL_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.2532958984375	2	500.255308	998.496064	0.34017	0.00017017	-4.1375	-0.0020698	-3.7973	-0.0018996	500.25313152370046	95.743	0.79414	95.747	95.389	96.183	0.0033798					41	18	3	0	0	0	0.88442	1	12156	12156		52.299	4.3836	1	654170	+		10450	24056	7109	7124	11962	11962					-0.0032445691650764275
EEWIGRKPS	9	Unmodified	_EEWIGRKPS_					0	0	0			REV__ENST00000552092.1_1_12:117317134-117317281:-|nuORF	REV__ENST00000552092.1_1_12:117317134-117317281:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.8175659179688	2	551.288005	1100.56146	-0.027179	-1.4984E-05	-0.29651	-0.00016346	-0.32368	-0.00017844	551.2877084684815	41.545	0.56179	41.545	41.326	41.888	0					37	15	3	0	0	0	0.024374	1	3759	3759		32.812	0	1	695270	+		10451	34945	7110	7125	11963	11963					0.015199573291738488
EEWKGHISY	9	Unmodified	_EEWKGHISY_					0	0	0		nc|ENSG00000133142|Q96EI5-2|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	nc|ENSG00000133142|Q96EI5-2|TCEAL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.3110961914062	2	574.772188	1147.52982	-1.3909	-0.00079945	2.2306	0.0012821	0.83968	0.00048262	574.7729286655538	60.864	0.52548	60.864	60.582	61.108	0					17	13	2	0	0	0	0.024428	1	7011	7011		40.058	14.484	1	139940			10452	18279	7111	7126	11964	11964					-0.03804035424764152
EEWKQLDP	8	Unmodified	_EEWKQLDP_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2959594726562	2	522.753464	1043.49238	-0.85443	-0.00044665	2.9902	0.0015631	2.1358	0.0011165	522.7574599569575	51.029	1.1277	51.116	50.416	51.544	0.087009					81	31	4	0	0	0	0.027866	1	5387	5387		37.159	5.2042	1	361120			10453	2052	7112	7127	11965	11965					-0.027631266903881624
EEWLSFNL	8	Unmodified	_EEWLSFNL_					0	0	0			REV__nc|ENSG00000005844|P20701-3|ITGAL	REV__nc|ENSG00000005844|P20701-3|ITGAL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7836303710938	2	519.250557	1036.48656	-0.86657	-0.00044996	0.73285	0.00038053	-0.13372	-6.9433E-05	519.2501453764478	34.618	2.3154	34.618	33.454	35.769	0					92	60	3	0	0	0	0.027866	1	2535	2535		25.45	0	1	257420	+		10454	19815	7113	7128	11966	11966					-0.03022225202039408
EEYKIRQL	8	Unmodified	_EEYKIRQL_					0	0	0			REV__ENSG00000151572|ENST00000392977|ANO4	REV__ENSG00000151572|ENST00000392977|ANO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7635498046875	2	539.798206	1077.58186	-0.93032	-0.00050219	-0.03156	-1.7036E-05	-0.96188	-0.00051922	539.7979152963355	31.722	0.84297	31.722	31.343	32.186	0					42	19	3	0	0	0	0.027866	1	2136	2136		65.803	5.5092	1	607830	+		10455	24778	7114	7129	11967	11967					0.046171279889904326
EEYLAEDPEPQ	11	Unmodified	_EEYLAEDPEPQ_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.2200927734375	3	440.526107	1318.55649	0.017334	7.636E-06	1.1143	0.00049086	1.1316	0.0004985	440.52665802772793	26.726	0.54485	26.726	26.406	26.951	0					18	12	2	0	0	0	0.02483	1	1353	1353		7.3413	0	1	44929			10456	8428	7115	7130	11968	11968					-0.09004436114764758
EEYLAEDPEPQ	11	Unmodified	_EEYLAEDPEPQ_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	440.526107	1318.55649	-0.34617	-0.0001525	1.8407	0.00081089	1.4946	0.00065839	440.5267370270106	26.612	0.42653	26.693	26.456	26.883	0.081293	-0.016772	0.000322	NaN	7.3413	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40351			10457	8428	7115	7130							-0.09004436114764758
EFAKVLDLR	9	Unmodified	_EFAKVLDLR_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7794799804688	2	545.816399	1089.61824	-1.2331	-0.00067302	4.4912	0.0024513	3.2581	0.0017783	545.8201587541763	73.164	0.14508	73.164	73.109	73.254	0					5	3	2	0	0	0	0.02366	1	8938	8938		82.75	7.7072	1	64458	+		10458	19687	7116	7131	11969	11969					0.07702004885709357
EFASEELVQ	9	Unmodified	_EFASEELVQ_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2964477539062	2	526.250754	1050.48696	-1.7899	-0.00094195	-1.9588	-0.0010308	-3.7487	-0.0019728	526.7508596635079	28.903	0.29585	28.903	28.736	29.032	0					9	6	2	0	0	0	0.024457	1	1725	1725		37.159	0	1	28905	+		10459	22509	7117	7132	11970	11970					-0.03626850272848969
EFCATTIDSV	10	Unmodified	_EFCATTIDSV_					0	0	0			REV__ENSG00000178462|ENST00000380419|TUBAL3	REV__ENSG00000178462|ENST00000380419|TUBAL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.7557983398438	2	543.244615	1084.47468	-0.01577	-8.5669E-06	3.2922	0.0017884	3.2764	0.0017799	543.2444413470183	67.132	3.6672	66.884	66.511	70.178	-0.24839					172	93	3	0	0	0	0.98754	1	7689	7689		47.657	8.4045	1	2240700	+		10460	27188	7118	7133	11971	11971					-0.06418210007564085
EFCKLIRKL	9	Unmodified	_EFCKLIRKL_					0	0	0		ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-2|PTCHD4	ENSG00000244694|ENST00000339488|PTCHD4	ENSG00000244694|ENST00000339488|PTCHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3455810546875	2	575.344269	1148.67399	0.60113	0.00034586	1.4307	0.00082317	2.0319	0.001169	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	0.89441	1	12390	12390		32.812	2.3088	1	3650400			10461	10825	7119	7134	11972	11972					0.105595148016846
EFCKQLQP	8	Unmodified	_EFCKQLQP_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.30718994140625	2	496.747127	991.479702	-0.47582	-0.00023636	-2.9438	-0.0014623	-3.4196	-0.0016987	496.74551831344576	82.964	0.4705	82.99	82.745	83.215	0.026558					14	10	2	0	0	0	0.027866	1	10292	10292		38.806	0	1	63684	+		10462	28275	7120	7135	11973	11973					-0.016378613542769926
EFDEKMTAME	10	2 Oxidation (M)	_EFDEKM(Oxidation (M))TAM(Oxidation (M))E_		EFDEKM(1)TAM(1)E		EFDEKM(110)TAM(110)E	0	0	2			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	631.787109375	2	631.749404	1261.48425	-0.38493	-0.00024318	-0.83964	-0.00053044	-1.2246	-0.00077362	631.7484418107622	53.981	0.17992	53.784	53.709	53.889	-0.19739					7	5	2	0	0	0	0.03519	1	5705	5705		109.48	27.238	1	136270	+		10463	19848	7121	7136	11974	11974		611;612			-0.1360280978431092
EFDMLVKNR	9	Unmodified	_EFDMLVKNR_					0	0	0		ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2928466796875	2	576.297516	1150.58048	0.65882	0.00037968	-4.0017	-0.0023061	-3.3428	-0.0019265	576.2954535287228	99.343	0.61842	99.207	98.936	99.554	-0.13526					23	15	2	0	0	0	0.024427	1	12314	12314		26.693	0	1	60081			10464	1267	7122	7137	11975	11975					0.011211706285848777
EFDYGKSN	8	Unmodified	_EFDYGKSN_					0	0	0			REV__ENSG00000080986|ENST00000261597|NDC80	REV__ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7355041503906	2	480.208889	958.403226	0.038274	1.8379E-05	2.8668	0.0013767	2.9051	0.001395	480.2104520928658	59.944	0.29176	59.744	59.538	59.83	-0.20016					10	7	2	0	0	0	0.027866	1	6815	6815		45.952	8.1404	1	84474	+		10465	20669	7123	7138	11976	11976					-0.0776396164990274
EFEELVRA	8	Unmodified	_EFEELVRA_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.27392578125	2	496.756007	991.497461	-1.0239	-0.00050864	0.72544	0.00036036	-0.29849	-0.00014828	496.75635352442015	39.785	0.62325	39.673	39.432	40.055	-0.11223					30	16	3	0	0	0	0.027866	1	3478	3478		30.504	1.3541	1	244210			10466	6944	7124	7139	11977	11977					0.0013717717223471482
EFEENWNP	8	Unmodified	_EFEENWNP_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7842407226562	2	532.719621	1063.42469	-0.90507	-0.00048215	0.6174	0.0003289	-0.28767	-0.00015325	532.7202029486161	45.597	0.10125	45.445	45.379	45.48	-0.15156					4	2	2	0	0	0	0.027866	1	4429	4429		12.959	2.6939	1	74599	+		10467	27880	7125	7140	11978	11978					-0.10448576621183747
EFEETFVI	8	Unmodified	_EFEETFVI_					0	0	0			REV__ENSG00000172139|ENST00000305815|SLC9C1	REV__ENSG00000172139|ENST00000305815|SLC9C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2773132324219	2	507.244941	1012.47533	-0.27709	-0.00014055	1.9643	0.00099636	1.6872	0.0008558	507.24561183255497	55.245	0.68431	55.014	54.748	55.432	-0.23087					36	19	3	0	0	0	0.027866	1	5869	5869		24.203	0	1	931230	+		10468	26636	7126	7141	11979	11979					-0.030410472961762025
EFEGDVLAVG	10	Unmodified	_EFEGDVLAVG_					0	0	0		nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2-6|NIBAN3;nc|ENSG00000167483|Q86XR2-4|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3;ENST00000600519.5_1_19:17657497-17660277:+|nuORF;nc|ENSG00000167483|Q86XR2-7|NIBAN3	nc|ENSG00000167483|Q86XR2-2|NIBAN3	nc|ENSG00000167483|Q86XR2-2|NIBAN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2420654296875	2	518.253297	1034.49204	0.50149	0.0002599	-0.90598	-0.00046953	-0.40449	-0.00020963	518.2528742650513	68.487	1.3402	68.257	67.958	69.299	-0.23048					86	32	5	0	0	0	0.03519	1	7986	7986		30.504	0	1	3768300			10469	18479	7127	7142	11980	11980					-0.023825464102401384
EFEKRDTI	8	Unmodified	_EFEKRDTI_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.E1693K|1|0.23|ENSG00000134982|chr5:112840671-112840671|G/A|missense_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7850341796875	2	519.266739	1036.51892	0.6947	0.00036074	0.27134	0.0001409	0.96605	0.00050164	519.2667482260373	78.258	0.65766	78.066	77.806	78.464	-0.1921					46	15	4	0	0	0	0.027866	1	9640	9640		38.806	3.1879	1	746280			10470	4847	7128	7143	11981	11981					0.002125622009543804
EFFKKNPE	8	Unmodified	_EFFKKNPE_					0	0	0			REV__ENSG00000002587|ENST00000002596|HS3ST1	REV__ENSG00000002587|ENST00000002596|HS3ST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.357421875	2	519.766374	1037.5182	0.37322	0.00019398	-4.386	-0.0022797	-4.0128	-0.0020857	519.7636831185542	82.043	0.72683	81.85	81.505	82.231	-0.19334					22	16	2	0	0	0	0.027866	1	9913	9913		53.351	7.3995	1	140800	+		10471	19764	7129	7144	11982	11982					0.0009376755190260155
EFFLIVKT	8	Unmodified	_EFFLIVKT_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2547302246094	2	498.791861	995.569169	-0.038261	-1.9084E-05	-3.4824	-0.001737	-3.5207	-0.0017561	498.7898812655893	72.34	0.62625	72.064	71.828	72.454	-0.2769					21	14	2	0	0	0	0.027866	1	8442	8442		18.324	0	1	135100			10472	3280	7130	7145	11983	11983					0.07120716596762122
EFFLIVKT	8	Unmodified	_EFFLIVKT_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.791861	995.569169	0.63287	0.00031567	-4.4525	-0.0022208	-3.8196	-0.0019052	498.789454456253	72.037	0.55472	72.037	71.978	72.533	0	0.013665	-0.00089209	NaN	27.882	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1315900			10473	3280	7130	7145							0.07120716596762122
EFFLIVKT	8	Unmodified	_EFFLIVKT_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.791861	995.569169	0.56627	0.00028245	-0.65862	-0.00032852	-0.092349	-4.6063E-05	498.7907571123935	72.305	0.10557	72.023	71.956	72.062	-0.28124	-0.00037904	0.0028926	NaN	27.882	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33399			10474	3280	7130	7145							0.07120716596762122
EFFLIVKT	8	Unmodified	_EFFLIVKT_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.791861	995.569169	-0.5921	-0.00029534	-2.3003	-0.0011474	-2.8924	-0.0014427	498.7903971080323	72.169	0.62363	71.97	71.788	72.412	-0.19811	-0.053158	0.0012549	NaN	27.882	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132500			10475	3280	7130	7145							0.07120716596762122
EFFLQKIL	8	Unmodified	_EFFLQKIL_					0	0	0		ENST00000570269.2_3_3:114045162-114045429:-|nuORF	ENST00000570269.2_3_3:114045162-114045429:-|nuORF	ENST00000570269.2_3_3:114045162-114045429:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.822998046875	2	519.305136	1036.59572	0.71682	0.00037225	-3.0371	-0.0015772	-2.3203	-0.001205	519.303705944965	82.257	0.41273	82.147	81.881	82.294	-0.11006					11	9	2	0	0	0	0.027866	1	10209	10209		73.975	4.3471	1	41226			10476	17026	7131	7146	11984	11984					0.07888405488097305
EFFNLTHLP	9	Unmodified	_EFFNLTHLP_					0	0	0		ENSG00000171236|ENST00000306390|LRG1	ENSG00000171236|ENST00000306390|LRG1	ENSG00000171236|ENST00000306390|LRG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2958374023438	2	559.287474	1116.5604	0.17931	0.00010029	-3.4539	-0.0019317	-3.2746	-0.0018314	559.2854169314879	50.771	0.58849	50.59	50.245	50.834	-0.18071					23	15	2	0	0	0	0.024447	1	5163	5163		40.778	5.1599	1	945600			10477	8134	7132	7147	11985	11985					0.0067774296028346726
EFFVARLL	8	Unmodified	_EFFVARLL_					0	0	0			REV__ENST00000335420.9_1_7:129772789-129772981:+|nuORF	REV__ENST00000335420.9_1_7:129772789-129772981:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.78729248046875	2	497.789653	993.564752	-0.5403	-0.00026896	-3.7292	-0.0018564	-4.2695	-0.0021253	497.7876822515526	60.7	0.88899	60.7	60.366	61.255	0					55	23	4	0	0	0	0.81662	1	7006	7006		57.811	2.3071	1	3625800	+		10478	30531	7133	7148	11986	11986					0.06771252173848552
EFFVPMEEV	9	Unmodified	_EFFVPMEEV_					0	0	0		ENSG00000158220|ENST00000389567|ESYT3	ENSG00000158220|ENST00000389567|ESYT3	ENSG00000158220|ENST00000389567|ESYT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.2767944335938	2	563.759901	1125.50525	-0.95531	-0.00053857	-0.19244	-0.00010849	-1.1477	-0.00064705	563.7599741758025	81.695	0.40331	81.721	81.536	81.94	0.025711					14	9	2	0	0	0	0.02435	1	10085	10085		60.972	18.497	1	144780			10479	6654	7134	7149	11987	11987					-0.052484316224990835
EFGAHQVIL	9	Unmodified	_EFGAHQVIL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2716064453125	2	507.274367	1012.53418	-0.40189	-0.00020387	-4.2223	-0.0021419	-4.6242	-0.0023457	507.27236134099223	31.183	1.1531	31.195	30.831	31.984	0.011799					65	27	4	0	0	0	0.39228	1	2041	2041		66.429	2.222	1	3026800			10480	7771	7135	7150	11988	11988					0.02841473788816984
EFGYSNLECH	10	Unmodified	_EFGYSNLECH_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.8121948242188	2	599.745313	1197.47607	-0.63363	-0.00038002	1.1244	0.00067438	0.49081	0.00029436	600.2468548606927	45.12	0.27261	44.909	44.715	44.988	-0.21109					11	6	2	0	0	0	0.03519	1	4219	4219		25.574	15.309	1	90872	+		10481	28136	7136	7151	11989	11989					-0.11476575918777598
EFHGSLEGKI	10	Unmodified	_EFHGSLEGKI_					0	0	0			REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2655639648438	2	558.787838	1115.56112	-0.2333	-0.00013036	-2.6171	-0.0014624	-2.8504	-0.0015928	559.2882351552355	83.424	0.76894	83.286	82.696	83.465	-0.13861					30	17	2	0	0	0	0.03519	1	10059	10059		52.937	11.51	1	61487	+		10482	23898	7137	7152	11990	11990					0.007965376093125087
EFHSYPATL	9	Unmodified	_EFHSYPATL_					0	0	0		ENST00000424280.5_1_3:186287973-186288207:-|nuORF	ENST00000424280.5_1_3:186287973-186288207:-|nuORF	ENST00000424280.5_1_3:186287973-186288207:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7960205078125	2	532.756007	1063.49746	-0.80499	-0.00042886	-0.59976	-0.00031953	-1.4048	-0.00074839	533.2572536772906	35.89	0.22723	35.934	35.741	35.968	0.044056					8	5	2	0	0	0	0.024436	1	2720	2720		23.042	7.4007	1	122530			10483	14038	7138	7153	11991	11991					-0.031748228277592716
EFHVDGAVVD	10	Unmodified	_EFHVDGAVVD_					0	0	0			REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.269287109375	2	544.256371	1086.49819	-0.33938	-0.00018471	-3.0684	-0.00167	-3.4078	-0.0018547	544.254751566294	70.29	0.19681	70.076	69.977	70.174	-0.21425					6	4	2	0	0	0	0.03519	1	8161	8161		27.882	1.1893	1	67179	+		10484	25784	7139	7154	11992	11992					-0.04160028178716857
EFIIEKLKSA	10	Unmodified	_EFIIEKLKSA_					0	0	0		ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.343017578125	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0616	1	11852	11852		37.812	1.3648	1	12648000			10485	7400	7140	7155	11993	11993					0.09415427371436635
EFIKFDRKL	9	Unmodified	_EFIKFDRKL_					0	0	0			REV__ENSG00000103249|ENST00000382745|CLCN7	REV__ENSG00000103249|ENST00000382745|CLCN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	599.311279296875	2	598.345323	1194.67609	0.39244	0.00023481	4.0619	0.0024304	4.4543	0.0026652	598.3487354288202	83.273	1.3654	83.182	82.188	83.553	-0.090454					45	31	3	0	0	0	0.023635	1	10315	10315		87.754	13.499	1	141610	+		10486	21370	7141	7156	11994	11994					0.08654266811140587
EFIKFDRKL	9	Unmodified	_EFIKFDRKL_					0	0	0			REV__ENSG00000103249|ENST00000382745|CLCN7	REV__ENSG00000103249|ENST00000382745|CLCN7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	598.345323	1194.67609	-1.9045	-0.0011395	7.777	0.0046533	5.8725	0.0035138	598.3501801732241	83.342	0.89942	83.342	82.793	83.692	0	-0.0079872	0.0017945	NaN	87.754	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141750	+		10487	21370	7141	7156							0.08654266811140587
EFIKFDRKL	9	Unmodified	_EFIKFDRKL_					0	0	0			REV__ENSG00000103249|ENST00000382745|CLCN7	REV__ENSG00000103249|ENST00000382745|CLCN7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	598.345323	1194.67609	-1.3728	-0.00082141	7.0654	0.0042275	5.6926	0.0034061	598.3497370319025	83.228	0.98203	83.254	82.702	83.684	0.026558	-0.095546	0.00094293	NaN	87.754	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102950	+		10488	21370	7141	7156							0.08654266811140587
EFILQKPLF	9	Unmodified	_EFILQKPLF_					0	0	0		ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.276611328125	2	567.831517	1133.64848	-0.30153	-0.00017122	-0.29157	-0.00016556	-0.5931	-0.00033678	567.831486122921	82.973	0.73206	82.834	82.48	83.212	-0.1386					36	16	3	0	0	0	0.024535	1	9951	9951		25.45	0	1	287560			10489	6334	7142	7157	11995	11995					0.08700363550883594
EFINTLDYL	9	Unmodified	_EFINTLDYL_					0	0	0			REV__ENSG00000186591|ENST00000355621|UBE2H	REV__ENSG00000186591|ENST00000355621|UBE2H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.2845458984375	2	564.284597	1126.55464	-0.82548	-0.00046581	1.2069	0.00068101	0.38138	0.00021521	564.2850962566886	84.036	0.76672	84.036	83.779	84.546	0					56	17	5	0	0	0	0.20967	2	10510	10510;10522		87.754	8.0417	1	1130400	+		10490	27870	7143	7158	11996;11997	11996					-0.003574003420453664
EFINTLDYL	9	Unmodified	_EFINTLDYL_					0	0	0			REV__ENSG00000186591|ENST00000355621|UBE2H	REV__ENSG00000186591|ENST00000355621|UBE2H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.2836303710938	2	564.284597	1126.55464	-1.1631	-0.00065634	1.394	0.0007866	0.23084	0.00013026	564.2852594158279	84.02	1.273	83.947	83.275	84.548	-0.072769					75	29	5	0	0	0	0.11092	2	10476	10476;10488		108.09	6.1795	1	1327600	+		10491	27870	7143	7158	11998;11999	11998					-0.003574003420453664
EFINTLDYL	9	Unmodified	_EFINTLDYL_					0	0	0			REV__ENSG00000186591|ENST00000355621|UBE2H	REV__ENSG00000186591|ENST00000355621|UBE2H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.2847290039062	2	564.284597	1126.55464	-1.1621	-0.00065575	1.6541	0.00093336	0.49197	0.00027761	564.2853303685299	83.937	0.85966	83.963	83.598	84.457	0.026558					67	19	5	0	0	0	0.096521	1	10422	10422		111.65	15.458	1	1307700	+		10492	27870	7143	7158	12000	12000					-0.003574003420453664
EFINTLDYL	9	Unmodified	_EFINTLDYL_					0	0	0			REV__ENSG00000186591|ENST00000355621|UBE2H	REV__ENSG00000186591|ENST00000355621|UBE2H	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	564.284597	1126.55464	-0.82548	-0.00046581	1.2069	0.00068101	0.38138	0.00021521	564.2850962566886	84.036	0.76672	84.036	83.779	84.546	0	0.054276	-0.00022116	NaN	111.65	56	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130400	+		10493	27870	7143	7158							-0.003574003420453664
EFINTLDYL	9	Unmodified	_EFINTLDYL_					0	0	0			REV__ENSG00000186591|ENST00000355621|UBE2H	REV__ENSG00000186591|ENST00000355621|UBE2H	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	564.284597	1126.55464	-1.1631	-0.00065634	1.394	0.0007866	0.23084	0.00013026	564.2852594158279	84.02	1.273	83.947	83.275	84.548	-0.072769	-0.035282	-9.986E-06	NaN	111.65	75	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1327600	+		10494	27870	7143	7158							-0.003574003420453664
EFINTLDYL	9	Unmodified	_EFINTLDYL_					0	0	0			REV__ENSG00000186591|ENST00000355621|UBE2H	REV__ENSG00000186591|ENST00000355621|UBE2H	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	564.284597	1126.55464	-1.1621	-0.00065575	1.6541	0.00093336	0.49197	0.00027761	564.2853303685299	83.937	0.85966	83.963	83.598	84.457	0.026558	-0.018994	0.00028353	NaN	111.65	67	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307700	+		10495	27870	7143	7158							-0.003574003420453664
EFIRNTRRAAH	11	Unmodified	_EFIRNTRRAAH_					0	0	0		FBXO8|p.Q297H|1|0.26|ENSG00000164117|chr4:174237481-174237481|T/A|missense_variant	FBXO8|p.Q297H|1|0.26|ENSG00000164117|chr4:174237481-174237481|T/A|missense_variant	FBXO8|p.Q297H|1|0.26|ENSG00000164117|chr4:174237481-174237481|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.75091552734375	3	457.584848	1369.73271	0.5308	0.00024289	3.6066	0.0016503	4.1374	0.0018932	457.920813197472	41.601	0.46474	41.601	41.36	41.825	0					17	12	2	0	0	0	0.024739	1	3779	3779		28.577	12.047	1	90017			10496	17646	7144	7159	12001	12001					0.06263707420362152
EFISILLMI	9	Unmodified	_EFISILLMI_					0	0	0			REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.816162109375	2	539.814479	1077.6144	-0.2494	-0.00013463	3.5397	0.0019108	3.2903	0.0017762	539.8162465475042	37.093	0.92006	37.03	36.669	37.589	-0.063389					62	24	4	0	0	0	0.15889	1	2983	2983		97.473	5.2821	1	3328500	+		10497	24081	7145	7160	12002	12002					0.07870199067633621
EFISILLMI	9	Unmodified	_EFISILLMI_					0	0	0			REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	539.814479	1077.6144	-0.2494	-0.00013463	3.5397	0.0019108	3.2903	0.0017762	539.8162465475042	37.093	0.92006	37.03	36.669	37.589	-0.063389	-0.10823	0.00037715	NaN	97.473	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3328500	+		10498	24081	7145	7160							0.07870199067633621
EFISILLMI	9	Unmodified	_EFISILLMI_					0	0	0			REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.814479	1077.6144	-0.69199	-0.00037355	3.9589	0.0021371	3.2669	0.0017635	539.816440619777	37.21	1.0002	37.242	36.957	37.957	0.032269	0.10459	0.00082974	NaN	97.473	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2931800	+		10499	24081	7145	7160							0.07870199067633621
EFISILLMI	9	Unmodified	_EFISILLMI_					0	0	0			REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	REV__SLC39A6|p.H747L|1|0.15|ENSG00000141424|chr18:36109621-36109621|T/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.814479	1077.6144	-1.2538	-0.00067684	3.2286	0.0017428	1.9747	0.001066	539.8161393073851	37.264	0.38641	37.044	36.885	37.271	-0.2195	-0.093817	4.1213E-05	NaN	97.473	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120710	+		10500	24081	7145	7160							0.07870199067633621
EFITKQIK	8	Unmodified	_EFITKQIK_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.76397705078125	2	503.800217	1005.58588	-0.71748	-0.00036147	-1.1573	-0.00058304	-1.8748	-0.00094451	503.79921642658337	34.967	0.23771	34.78	34.56	34.798	-0.18675					8	5	2	0	0	0	0.027866	1	2578	2578		45.952	0	1	73243			10501	885	7146	7161	12003	12003					0.08331217482714237
EFKDHVCEL	9	Unmodified	_EFKDHVCEL_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.7360229492188	2	560.260599	1118.50665	0.74503	0.00041741	2.5501	0.0014287	3.2952	0.0018461	560.2618663755514	87.65	1.237	87.669	87.346	88.583	0.018555					69	29	3	0	0	0	0.024025	1	11072	11072		62.107	0	1	1866700			10502	18056	7147	7162	12004	12004					-0.04786797533756726
EFKGIPISY	9	Unmodified	_EFKGIPISY_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;ENST00000531788.5_1_6:135639727-135754270:-|nuORF	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2727661132812	2	527.2844	1052.55425	-0.63842	-0.00033663	-0.26576	-0.00014013	-0.90418	-0.00047676	527.2840922874601	92.108	1.4059	92.1	91.622	93.028	-0.0082932					61	33	2	0	0	0	0.023817	1	11651	11651		51.335	8.9393	1	1125400			10503	4907	7148	7163	12005	12005					0.030072247287762366
EFKGIPISY	9	Unmodified	_EFKGIPISY_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;ENST00000531788.5_1_6:135639727-135754270:-|nuORF	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2733154296875	2	527.2844	1052.55425	0.40219	0.00021207	1.3854	0.0007305	1.7876	0.00094256	527.2834851400597	92.156	1.9866	92.165	91.112	93.099	0.009407					113	47	5	0	0	0	0.024209	1	11596	11596		39.253	0	1	892380			10504	4907	7148	7163	12006	12006					0.030072247287762366
EFKINEQSH	9	Unmodified	_EFKINEQSH_					0	0	0			REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.8353881835938	2	566.275095	1130.53564	-0.87998	-0.00049831	3.3755	0.0019115	2.4955	0.0014131	566.2765339728511	21.841	0.33852	21.628	21.363	21.701	-0.2128					8	6	2	0	0	0	0.024397	1	687	687		39.253	0	1	19667	+		10505	26264	7149	7164	12007	12007					-0.024409369130808045
EFKKKLEK	8	Unmodified	_EFKKKLEK_					0	0	0			REV__CCDC13|p.E343K|1|0.14|ENSG00000244607|chr3:42739771-42739771|C/T|missense_variant	REV__CCDC13|p.E343K|1|0.14|ENSG00000244607|chr3:42739771-42739771|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3214721679688	2	525.321317	1048.62808	0.87305	0.00045863	-1.034	-0.00054319	-0.16096	-8.4555E-05	525.3205949867269	19.78	0.49436	19.58	19.355	19.85	-0.2001					23	9	4	0	0	0	0.62178	1	457	457		74.255	10.949	1	311010	+		10506	19253	7150	7165	12008	12008					0.1057119289109778
EFKKTEPD	8	Unmodified	_EFKKTEPD_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.33172607421875	2	497.248015	992.481476	0.25105	0.00012483	-1.1922	-0.00059283	-0.94117	-0.00046799	497.24739663771373	104.45	0.48907	104.45	104.21	104.7	-0.0032196					14	11	2	0	0	0	0.027866	1	13301	13301		32.812	4.5581	1	35143	+		10507	19690	7151	7166	12009	12009					-0.015065290646589347
EFKRIKRKL	9	Unmodified	_EFKRIKRKL_					0	0	0			REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.587158203125	3	406.599547	1216.77681	0.49852	0.0002027	-1.0926	-0.00044425	-0.59409	-0.00024156	406.59909736798716	25.236	0.49982	25.065	24.865	25.365	-0.17151					23	11	3	0	0	0	0.024337	1	1131	1131		49.536	1.5765	1	182510	+		10508	24624	7152	7167	12010	12010					0.17709343584647286
EFKTHHEM	8	Oxidation (M)	_EFKTHHEM(Oxidation (M))_		EFKTHHEM(1)		EFKTHHEM(66)	0	0	1		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.7371215820312	2	537.737291	1073.46003	1.0021	0.00053889	-0.22865	-0.00012295	0.77349	0.00041593	537.7366406881191	17.434	0.44876	17.28	17.108	17.557	-0.15403					22	8	4	0	0	0	0.71063	1	181	181		66.429	13.078	1	112220			10509	1005	7153	7168	12011	12011		31			-0.0737623736504247
EFKTHHEM	8	Oxidation (M)	_EFKTHHEM(Oxidation (M))_		EFKTHHEM(1)		EFKTHHEM(82)	0	0	1		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7381591796875	2	537.737291	1073.46003	-0.5334	-0.00028683	0.54244	0.00029169	0.0090426	4.8626E-06	537.7373948267469	17.435	0.54954	17.228	17.014	17.564	-0.20669					19	10	3	0	0	0	0.53523	1	173	173		82.305	21.333	1	94016			10510	1005	7153	7168	12012	12012		31			-0.0737623736504247
EFKTHHEM	8	Oxidation (M)	_EFKTHHEM(Oxidation (M))_		EFKTHHEM(1)		EFKTHHEM(94)	0	0	1		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7371826171875	2	537.737291	1073.46003	3.8477	0.002069	-3.7856	-0.0020357	0.062022	3.3351E-05	537.7350818814887	17.505	0.64361	17.254	17.025	17.669	-0.25049					21	12	3	0	0	0	0.42327	1	160	160		94.006	33.034	1	140850			10511	1005	7153	7168	12013	12013		31			-0.0737623736504247
EFKTHHEM	8	Unmodified	_EFKTHHEM_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.739501953125	2	529.739834	1057.46511	-0.10294	-5.4533E-05	0.051745	2.7411E-05	-0.051199	-2.7122E-05	529.7397030955037	21.192	0.63701	21.001	20.735	21.372	-0.19072					25	12	3	0	0	0	0.81662	1	637	637		57.811	17.033	1	168600			10512	1005	7153	7169	12014	12014					-0.06131933502410902
EFKTHHEM	8	Unmodified	_EFKTHHEM_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.73828125	2	529.739834	1057.46511	-1.2176	-0.00064504	1.2573	0.00066602	0.039607	2.0981E-05	529.7403636496963	21.242	0.5421	21.029	20.773	21.315	-0.2128					25	10	3	0	0	0	0.59392	1	625	625		76.847	30.895	1	139640			10513	1005	7153	7169	12015	12015					-0.06131933502410902
EFKTHHEM	8	Unmodified	_EFKTHHEM_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.739834	1057.46511	0.04511	2.3897E-05	-0.29803	-0.00015788	-0.25292	-0.00013398	529.7395808348324	21.071	0.57906	20.894	20.63	21.209	-0.17721	-0.080916	-0.0005519	NaN	76.847	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226370			10514	1005	7153	7169							-0.06131933502410902
EFLAALLFI	9	Unmodified	_EFLAALLFI_					0	0	0			REV__ENST00000552885.2_1_12:80328990-80329323:+|nuORF	REV__ENST00000552885.2_1_12:80328990-80329323:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7871704101562	2	518.807511	1035.60047	-0.57945	-0.00030062	-0.99431	-0.00051586	-1.5738	-0.00081648	519.3092790447258	24.97	0.17393	24.743	24.623	24.797	-0.22683					5	3	2	0	0	0	0.024487	1	1145	1145		40.573	1.7665	1	19721	+		10515	34962	7154	7170	12016	12016					0.08409289630844796
EFLFHISRLFY	11	Unmodified	_EFLFHISRLFY_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2015686035156	3	491.2626	1470.76597	-0.67337	-0.0003308	-4.1656	-0.0020464	-4.8389	-0.0023772	491.2607576114996	41.202	1.546	41.067	40.712	42.258	-0.13553					58	40	2	0	0	0	0.02484	1	3790	3790		22.562	10.629	1	238190			10516	1354	7155	7171	12017	12017					0.04941896419677505
EFLGLVKR	8	Unmodified	_EFLGLVKR_					0	0	0			REV__ENST00000508648.5_1_4:129100626-129128462:+|nuORF	REV__ENST00000508648.5_1_4:129100626-129128462:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2683410644531	2	481.295102	960.575651	-0.23112	-0.00011124	-0.17588	-8.4648E-05	-0.407	-0.00019589	481.2948099353994	69.523	0.20675	69.256	69.121	69.327	-0.26725					6	4	2	0	0	0	0.027866	1	8052	8052		26.796	7.4361	1	63934	+		10517	34070	7156	7172	12018	12018					0.09378654548129362
EFLIANKAN	9	Unmodified	_EFLIANKAN_					0	0	0			REV__nc|ENSG00000196961|O95782|AP2A1	REV__nc|ENSG00000196961|O95782|AP2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3050842285156	2	510.279649	1018.54475	0.36419	0.00018584	3.2739	0.0016706	3.6381	0.0018564	510.78256712099216	22.22	0.33065	22.031	21.816	22.147	-0.18894					18	6	4	0	0	0	0.024495	1	770	770		42.396	11.892	1	90687	+		10518	28246	7157	7173	12019	12019					0.03621456443227089
EFLKKLASD	9	Unmodified	_EFLKKLASD_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.266845703125	2	525.795132	1049.57571	1.1524	0.0006059	-2.3003	-0.0012095	-1.148	-0.00060361	525.7941746883864	51.372	0.4324	51.191	50.945	51.378	-0.18071					14	10	2	0	0	0	0.024511	1	5232	5232		25.574	1.0549	1	144860			10519	10131	7158	7174	12020	12020					0.052906097574805244
EFLKKLASD	9	Unmodified	_EFLKKLASD_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.795132	1049.57571	-0.42777	-0.00022492	0.37291	0.00019608	-0.054858	-2.8844E-05	525.7951612596729	51.239	0.54323	51.239	50.992	51.535	0	0.020112	-3.9854E-06	NaN	31.53	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267610			10520	10131	7158	7174							0.052906097574805244
EFLKKLASD	9	Unmodified	_EFLKKLASD_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.795132	1049.57571	-0.74939	-0.00039403	0.65145	0.00034253	-0.097945	-5.1499E-05	525.7952774459128	51.423	0.53469	51.275	51.009	51.544	-0.14759	0.056401	0.00028892	NaN	31.53	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296620			10521	10131	7158	7174							0.052906097574805244
EFLKKLASD	9	Unmodified	_EFLKKLASD_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.795132	1049.57571	-0.8153	-0.00042868	0.4727	0.00024854	-0.34259	-0.00018013	525.7953216567223	51.083	0.65093	51.17	50.926	51.577	0.087006	-0.048781	0.00010095	NaN	31.53	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295750			10522	10131	7158	7174							0.052906097574805244
EFLKPNKKP	9	Unmodified	_EFLKPNKKP_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|34|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|34|2|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|34|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8180541992188	2	550.826766	1099.63898	-1.2952	-0.00071341	1.5266	0.00084089	0.23144	0.00012748	550.8275179728204	39.411	0.53101	39.312	38.983	39.514	-0.098751					21	14	2	0	0	0	0.024457	1	3320	3320		29.15	6.1071	1	232780			10523	17859	7159	7175	12021	12021					0.09314595265368553
EFLLVWKL	8	Unmodified	_EFLLVWKL_					0	0	0		ENST00000468001.1_1_3:183354395-183368101:+|nuORF	ENST00000468001.1_1_3:183354395-183368101:+|nuORF	ENST00000468001.1_1_3:183354395-183368101:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	524.315503	1046.61645	-0.61113	-0.00032043	1.1907	0.00062429	0.57954	0.00030386	524.8178695739339	28.403	0.12308	28.234	28.131	28.254	-0.16897					4	2	2	0	0	0	0.027866	1	1655	1655		50.025	5.4935	1	17146			10524	14859	7160	7176	12022	12022					0.09500995867756501
EFLQAAGLSL	10	Unmodified	_EFLQAAGLSL_					0	0	0		ENSG00000127989|ENST00000351870|MTERF1	ENSG00000127989|ENST00000351870|MTERF1	ENSG00000127989|ENST00000351870|MTERF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7766723632812	2	524.787307	1047.56006	-0.49824	-0.00026147	0.57324	0.00030083	0.074996	3.9357E-05	524.7876045213702	74.256	0.85075	74.265	73.881	74.731	0.0096512					37	19	3	0	0	0	0.03519	1	8954	8954		72.879	9.3454	1	551370			10525	4272	7161	7177	12023	12023					0.038183232404207956
EFLRDLKD	8	Unmodified	_EFLRDLKD_					0	0	0			REV__ENSG00000146072|ENST00000296861|TNFRSF21	REV__ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7872924804688	2	518.277106	1034.53966	0.0047505	2.4621E-06	-0.51982	-0.00026941	-0.51507	-0.00026695	518.2765862617422	24.449	0.42139	24.274	24.089	24.511	-0.17484					13	9	2	0	0	0	0.027866	1	1095	1095		71.296	18.359	1	68393	+		10526	24458	7162	7178	12024	12024					0.023771525806068894
EFLRDLKD	8	Unmodified	_EFLRDLKD_					0	0	0			REV__ENSG00000146072|ENST00000296861|TNFRSF21	REV__ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.277106	1034.53966	-0.37486	-0.00019428	-0.16343	-8.47E-05	-0.53828	-0.00027898	518.2767078731129	24.626	0.50351	24.411	24.089	24.592	-0.2151	0.093029	0.0013116	NaN	71.296	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88081	+		10527	24458	7162	7178							0.023771525806068894
EFLRDLKD	8	Unmodified	_EFLRDLKD_					0	0	0			REV__ENSG00000146072|ENST00000296861|TNFRSF21	REV__ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.277106	1034.53966	2.1664	0.0011228	-2.7883	-0.0014451	-0.62191	-0.00032232	518.2757905327787	24.449	0.38982	24.268	24.114	24.504	-0.18089	-0.049515	-0.0014092	NaN	71.296	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60206	+		10528	24458	7162	7178							0.023771525806068894
EFLREGVI	8	Unmodified	_EFLREGVI_					0	0	0			REV__ZNF433|p.E413*|1|0.33|ENSG00000197647|chr19:12015630-12015631|-/A|frameshift_variant	REV__ZNF433|p.E413*|1|0.33|ENSG00000197647|chr19:12015630-12015631|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2607421875	2	481.768917	961.523281	0.52687	0.00025383	-0.33324	-0.00016055	0.19363	9.3285E-05	481.76860760811235	87.532	0.56194	87.532	87.321	87.883	0					28	13	3	0	0	0	0.027866	1	10985	10985		38.806	13.356	1	454070	+		10529	28334	7163	7179	12025	12025					0.04098071414523474
EFLTVYIKN	9	Unmodified	_EFLTVYIKN_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.2994384765625	2	563.810782	1125.60701	-0.22435	-0.00012649	0.99837	0.00056289	0.77401	0.0004364	563.810777125252	75.128	0.44552	74.883	74.591	75.037	-0.24455					11	10	2	0	0	0	0.024427	1	9131	9131		51.335	16.135	1	51527			10530	4534	7164	7180	12026	12026					0.04923182791549152
EFLVFHHI	8	Unmodified	_EFLVFHHI_					0	0	0		ENST00000298875.8_1_14:92588431-92592517:+|nuORF;ENST00000553427.5_1_14:92588507-92592514:+|nuORF	ENST00000298875.8_1_14:92588431-92592517:+|nuORF	ENST00000298875.8_1_14:92588431-92592517:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8109741210938	2	521.279452	1040.54435	-1.2673	-0.00066063	-1.8054	-0.00094112	-3.0727	-0.0016018	521.2780741662076	83.631	0.99094	83.631	83.309	84.3	0					48	22	4	0	0	0	0.027866	1	10421	10421		46.766	21.316	1	268670			10531	11877	7165	7181	12027	12027					0.025700815140453415
EFLVRTSNL	9	Unmodified	_EFLVRTSNL_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.816162109375	2	539.798206	1077.58186	-0.6704	-0.00036188	1.0116	0.00054607	0.34121	0.00018418	540.3008125100488	37.35	0.40092	37.287	37.014	37.415	-0.063385					14	10	2	0	0	0	0.022882	1	2983	2983		95.815	16.103	1	90845	+		10532	23873	7166	7182	12028	12028					0.046171279889904326
EFLVRTSNL	9	Unmodified	_EFLVRTSNL_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.798206	1077.58186	-0.9686	-0.00052285	0.98945	0.0005341	0.020848	1.1254E-05	540.3003675769805	37.607	0.30114	37.639	37.45	37.751	0.032272	0.17589	-7.9671E-06	NaN	95.815	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76807	+		10533	23873	7166	7182							0.046171279889904326
EFMEIMVEI	9	Unmodified	_EFMEIMVEI_					0	0	0		ENSG00000203926|ENST00000370518|SPANXA2;ENSG00000198573|ENST00000358993|SPANXC;ENSG00000198021|ENST00000370519|SPANXA1;ENSG00000196406|ENST00000370515|SPANXD	ENSG00000203926|ENST00000370518|SPANXA2	ENSG00000203926|ENST00000370518|SPANXA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.797119140625	2	570.769411	1139.52427	-0.9295	-0.00053053	4.0412	0.0023066	3.1117	0.0017761	570.7717259092207	57.147	0.81536	57.242	56.614	57.429	0.09531					42	22	2	0	0	0	0.023596	1	6356	6356		44.117	13.613	1	193700			10534	9867	7167	7183	12029	12029					-0.039912183231081144
EFMIMENW	8	Unmodified	_EFMIMENW_					0	0	0			REV__ENSG00000019505|ENST00000020926|SYT13	REV__ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.7765502929688	2	550.232996	1098.45144	-0.12286	-6.7599E-05	0.56628	0.00031159	0.44342	0.00024399	550.7357235561929	60.008	0.37177	59.832	59.704	60.076	-0.1761					15	9	2	0	0	0	0.027866	1	6692	6692		31.955	12.595	1	82896	+		10535	19988	7168	7184	12030	12030					-0.09384927325845638
EFNAKKMW	8	Unmodified	_EFNAKKMW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.8218994140625	2	527.262945	1052.51134	0.13272	6.9978E-05	2.0176	0.0010638	2.1503	0.0011338	527.2637344706918	32.622	0.45501	32.684	32.428	32.883	0.062885					26	11	3	0	0	0	0.027866	1	2233	2233		30.504	0	1	209120			10536	1175	7169	7185	12031	12031					-0.012818686003129187
EFNIENLVGT	10	Unmodified	_EFNIENLVGT_					0	0	0		nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;ENSG00000138115|ENST00000371270|CYP2C8	nc|ENSG00000138115|P10632-2|CYP2C8	nc|ENSG00000138115|P10632-2|CYP2C8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.8026123046875	2	568.285128	1134.5557	0.54185	0.00030793	0.47113	0.00026774	1.013	0.00057566	568.2854909337995	82.216	0.85439	82.106	81.482	82.336	-0.11006					29	20	2	0	0	0	0.03519	1	10143	10143		109.48	19.109	1	202010			10537	5207	7170	7186	12032	12032					-0.006191859731416116
EFNIENLVGT	10	Unmodified	_EFNIENLVGT_					0	0	0		nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;ENSG00000138115|ENST00000371270|CYP2C8	nc|ENSG00000138115|P10632-2|CYP2C8	nc|ENSG00000138115|P10632-2|CYP2C8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.802734375	2	568.285128	1134.5557	-1.4106	-0.00080161	-2.5604	-0.0014551	-3.971	-0.0022567	568.7848477250058	81.374	0.20448	81.398	81.288	81.493	0.023911					7	4	2	0	0	0	0.03519	1	10066	10066		95.815	33.708	1	38308			10538	5207	7170	7186	12033	12033					-0.006191859731416116
EFNQKRAKFKE	11	Unmodified	_EFNQKRAKFKE_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;RABEP1|p.S593Kfs*12|1|0.14|ENSG00000029725|chr17:5365219-5365220|-/CGAAGATT|frameshift_variant	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.7513427734375	3	475.593009	1423.7572	0.16547	7.8694E-05	-2.2762	-0.0010825	-2.1107	-0.0010038	475.591915799567	20.282	0.43712	20.058	19.878	20.315	-0.22344					12	8	2	0	0	0	0.024851	1	526	526		21.032	2.5012	1	21773			10539	1007	7171	7187	12034	12034					0.06226922783230293
EFPCTSSLSL	10	Unmodified	_EFPCTSSLSL_					0	0	0		ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	ENST00000506480.5_1_4:88489607-88651604:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7750244140625	2	542.254982	1082.49541	0.1595	8.6489E-05	0.12732	6.904E-05	0.28682	0.00015553	542.2553073323587	72.767	0.24223	72.486	72.344	72.586	-0.28124					8	5	2	0	0	0	0.03519	1	8840	8840		26.693	1.1189	1	31699			10540	15743	7172	7188	12035	12035					-0.04253619627866101
EFPFDVDALF	10	Unmodified	_EFPFDVDALF_					0	0	0		nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1	nc|ENSG00000137343|Q5SQI0|ATAT1	nc|ENSG00000137343|Q5SQI0|ATAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073059082031	3	400.52549	1198.55464	1.6506	0.00066109	1.4195	0.00056857	3.0701	0.0012297	400.52585685127093	24.556	1.2288	24.375	23.582	24.811	-0.18089					51	27	3	0	0	0	0.03519	1	959	959		40.058	2.4583	1	106240			10541	18312	7173	7189	12036	12036					-0.036694003420507215
EFPMVSLFLT	10	Unmodified	_EFPMVSLFLT_					0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B;REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000197226|ENST00000355235|TBC1D9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.7883911132812	2	592.307018	1182.59948	-1.517	-0.00089855	3.1969	0.0018936	1.6799	0.00099501	592.3091703073718	52.552	0.3426	52.282	52.089	52.432	-0.26903					11	8	2	0	0	0	0.03519	1	5473	5473		35.618	0	1	97200	+		10542	28279;21792	7174	7190	12037	12037					0.015487071996176383
EFPRKRKG	8	Unmodified	_EFPRKRKG_					0	0	0		nc|ENSG00000029153|Q8WYA1-9|BMAL2;chr12:27333136-27368262|479|10.58|0.54|4.3|+|ENST00000546179|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;chr12:27368412-27376346|486|13.31|0.4|5.05|+|ENST00000544915|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.27520751953125	2	509.30125	1016.58795	-0.26525	-0.00013509	3.1045	0.0015811	2.8393	0.001446	509.3026032353065	70.376	0.88023	70.388	70.171	71.052	0.012421					40	22	3	0	0	0	0.027866	1	8465	8465		30.504	0	1	1402900			10543	318	7175	7191	12038	12038					0.08031691011183284
EFQKLLNNL	9	Unmodified	_EFQKLLNNL_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8145141601562	2	559.813856	1117.61316	-0.85269	-0.00047735	3.8179	0.0021373	2.9652	0.00166	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.27161	1	10094	10094		79.451	2.6769	1	10426000			10544	4943	7176	7192	12039	12039					0.05905701023107213
EFQNRKLY	8	Unmodified	_EFQNRKLY_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2617797851562	2	549.290548	1096.56654	-1.1169	-0.00061351	4.125	0.0022658	3.0081	0.0016523	549.2951563147029	91.848	1.0315	91.848	91.341	92.372	0					71	24	5	0	0	0	0.027866	1	11570	11570		29.15	0	1	877590	+		10545	28027	7177	7193	12040	12040					0.022122611918121038
EFQRVVEVLQ	10	Unmodified	_EFQRVVEVLQ_					0	0	0		nc|ENSG00000088298|Q9BV94-2|EDEM2;ENSG00000088298|ENST00000374492|EDEM2	nc|ENSG00000088298|Q9BV94-2|EDEM2	nc|ENSG00000088298|Q9BV94-2|EDEM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.2315368652344	3	416.231189	1245.67174	0.055213	2.2981E-05	0.82804	0.00034466	0.88325	0.00036764	416.2315842412846	20.954	2.1418	20.777	20.336	22.478	-0.17721					111	44	6	0	0	0	0.98044	1	646	646		48.602	11.093	1	3025500			10546	1865	7178	7194	12041	12041					0.05872757597580858
EFRQMWAEF	9	Unmodified	_EFRQMWAEF_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526527.1_1_11:14481741-14482839:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.55938720703125	3	415.190336	1242.54918	-0.60314	-0.00025042	0.23587	9.7933E-05	-0.36727	-0.00015249	415.19018607227764	27.063	0.66653	26.82	26.41	27.076	-0.24217					24	15	3	0	0	0	0.024261	1	1410	1410		64.207	33.638	1	132150			10547	4330	7179	7195	12042	12042					-0.06239402405526562
EFRVLWGSL	9	Unmodified	_EFRVLWGSL_					0	0	0		ENST00000480290.5_1_7:127991288-127999229:-|nuORF	ENST00000480290.5_1_7:127991288-127999229:-|nuORF	ENST00000480290.5_1_7:127991288-127999229:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.804443359375	2	553.803291	1105.59203	0.38283	0.00021201	-2.3813	-0.0013188	-1.9985	-0.0011068	553.8022475853755	68.27	1.0021	68.036	67.797	68.799	-0.23376					36	24	2	0	0	0	0.17822	1	7903	7903		93.195	10.955	1	1279400			10548	15190	7180	7196	12043	12043					0.0434573571421879
EFSFFYDT	8	Unmodified	_EFSFFYDT_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8060302734375	2	528.221465	1054.42838	-1.0209	-0.00053928	3.3806	0.0017857	2.3597	0.0012464	528.2231501014388	49.957	0.75185	49.957	49.694	50.445	0					37	21	2	0	0	0	0.027866	1	5161	5161		47.916	10.756	1	1180600			10549	5279	7181	7197	12044	12044					-0.09665906847340011
EFSFFYDT	8	Unmodified	_EFSFFYDT_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8059692382812	2	528.221465	1054.42838	-0.27523	-0.00014538	2.923	0.001544	2.6477	0.0013986	528.2228532497707	50.152	0.75023	50.001	49.708	50.458	-0.1512					33	21	2	0	0	0	0.027866	1	5157	5157		55.504	28.811	1	1254000			10550	5279	7181	7197	12045	12045					-0.09665906847340011
EFSHEAVKT	9	Unmodified	_EFSHEAVKT_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;ENST00000524952.2_1_11:985541-988707:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.23828125	2	524.258914	1046.50327	-0.93314	-0.00048921	0.21911	0.00011487	-0.71402	-0.00037433	524.7621486118747	44.261	0.17463	44.016	43.94	44.115	-0.2444					5	4	2	0	0	0	0.024541	1	4114	4114		37.812	5.8567	1	69484			10551	9939	7182	7198	12046	12046					-0.018117243160759244
EFSKTPYTI	9	Unmodified	_EFSKTPYTI_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.269287109375	2	543.279315	1084.54408	-0.55266	-0.00030025	0.86639	0.00047069	0.31373	0.00017044	543.2788044070267	70.021	0.53167	69.799	69.556	70.087	-0.22246					18	12	2	0	0	0	0.024457	1	8161	8161		37.159	10.466	1	132210			10552	2503	7183	7199	12047	12047					0.005186170035358373
EFSLTTAI	8	Unmodified	_EFSLTTAI_					0	0	0			REV__nc|ENSG00000134376|P82279-5|CRB1	REV__nc|ENSG00000134376|P82279-5|CRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	2	441.234376	880.454199	-0.67663	-0.00029855	-2.0732	-0.00091477	-2.7498	-0.0012133	441.2330064390904	31.187	0.4668	31.187	30.961	31.428	0					13	10	2	0	0	0	0.027866	1	2078	2078		44.531	14.69	1	33405	+		10553	19614	7184	7200	12048	12048					0.009189873949480898
EFSRPIVGR	9	Unmodified	_EFSRPIVGR_					0	0	0			REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3218383789062	2	530.79854	1059.58253	-1.5986	-0.00084856	1.8932	0.0010049	0.29454	0.00015634	531.3016631453592	75.512	1.0041	75.512	74.914	75.918	0					37	26	2	0	0	0	0.024456	1	9218	9218		42.864	21.162	1	410230	+		10554	25637	7185	7201	12049	12049					0.055119674287197995
EFSRPIVGR	9	Unmodified	_EFSRPIVGR_					0	0	0			REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.79854	1059.58253	-0.31934	-0.00016951	-3.4192	-0.0018149	-3.7385	-0.0019844	530.7965103662463	75.472	0.64853	75.2	74.934	75.582	-0.27266	-0.1245	-0.0013788	NaN	35.152	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224550	+		10555	25637	7185	7201							0.055119674287197995
EFSRPIVGR	9	Unmodified	_EFSRPIVGR_					0	0	0			REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.79854	1059.58253	-0.751	-0.00039863	-3.2474	-0.0017237	-3.9984	-0.0021223	530.796672615146	75.518	0.76665	75.259	74.906	75.672	-0.25866	-0.065407	-0.0011964	NaN	35.152	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265270	+		10556	25637	7185	7201							0.055119674287197995
EFSRPIVGR	9	Unmodified	_EFSRPIVGR_					0	0	0			REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.79854	1059.58253	0.14792	7.8513E-05	-3.8178	-0.0020265	-3.6699	-0.001948	530.7960860394571	75.313	0.88018	75.137	74.816	75.696	-0.17548	-0.18707	-0.001802	NaN	35.152	35	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223030	+		10557	25637	7185	7201							0.055119674287197995
EFTFNVEPA	9	Unmodified	_EFTFNVEPA_					0	0	0			REV__ENSG00000079257|ENST00000264265|LXN	REV__ENSG00000079257|ENST00000264265|LXN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2322387695312	2	527.248015	1052.48148	0.28038	0.00014783	2.8245	0.0014892	3.1049	0.0016371	527.2494405060281	68.085	1.2275	67.847	67.245	68.472	-0.23814					50	29	2	0	0	0	0.024427	1	7783	7783		42.396	11.892	1	422370	+		10558	20630	7186	7202	12050	12050					-0.042665290646709764
EFTRALEV	8	Unmodified	_EFTRALEV_					0	0	0		ENST00000380241.7_1_X:16720981-16730968:-|nuORF	ENST00000380241.7_1_X:16720981-16730968:-|nuORF	ENST00000380241.7_1_X:16720981-16730968:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7604064941406	2	482.758549	963.502546	0.50987	0.00024614	3.7662	0.0018181	4.276	0.0020643	482.76011343632797	77.782	1.8271	77.571	77.037	78.864	-0.21088					96	43	4	0	0	0	0.83003	1	9612	9612		56.721	3.3696	1	1969600			10559	13302	7187	7203	12051	12051					0.01933481034848228
EFTVEIWSF	9	Unmodified	_EFTVEIWSF_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	579.7899780273438	2	579.279315	1156.54408	-0.45761	-0.00026508	-3.5652	-0.0020653	-4.0228	-0.0023303	579.2778145332985	94.582	1.0256	94.582	94.189	95.215	-0.00022888					35	23	2	0	0	0	0.024457	1	11970	11970		37.159	0	1	310410	+	+	10560	19589	7188	7204	12052	12052					-0.027933829964922552
EFVDPYPVNK	10	Unmodified	_EFVDPYPVNK_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2071533203125	3	403.20464	1206.59209	1.7549	0.00070757	4.2019	0.0016942	5.9568	0.0024018	403.2063348126522	35.06	1.1418	35.104	34.756	35.898	0.044056					86	29	5	0	0	0	1.0344	1	2608	2608		41.427	1.3684	1	7299400			10561	8434	7189	7205	12053	12053					-0.0029430907643472892
EFVFATVT	8	Unmodified	_EFVFATVT_					0	0	0			REV__ENSG00000075340|ENST00000264436|ADD2	REV__ENSG00000075340|ENST00000264436|ADD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.23553466796875	2	457.236919	912.459284	-0.6217	-0.00028426	-2.2241	-0.0010169	-2.8458	-0.0013012	457.2357578940912	22.351	1.0635	22.165	21.906	22.969	-0.18539					45	22	4	0	0	0	0.78609	1	779	779		60.294	0	1	668530	+		10562	20545	7190	7206	12054	12054					-0.0004470874242770151
EFVFICGAR	9	Unmodified	_EFVFICGAR_					0	0	0			REV__DYNC1H1|p.R4143C|1|0.09|ENSG00000197102|chr14:102042662-102042662|C/T|missense_variant	REV__DYNC1H1|p.R4143C|1|0.09|ENSG00000197102|chr14:102042662-102042662|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.833984375	2	521.262945	1040.51134	-1.6032	-0.00083569	-2.2822	-0.0011896	-3.8854	-0.0020253	521.762975968498	20.585	0.52994	20.585	20.468	20.998	0					18	10	3	0	0	0	0.024294	1	584	584		45.952	7.1458	1	95278	+		10563	19724	7191	7207	12055	12055					-0.007298686003196053
EFVFKVREVQ	10	Unmodified	_EFVFKVREVQ_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7293701171875	3	427.571434	1279.69247	-0.10549	-4.5105E-05	-3.3971	-0.0014525	-3.5025	-0.0014976	427.9038698764102	28.742	0.33951	28.59	28.484	28.824	-0.15195					9	7	2	0	0	0	0.03519	1	1696	1696		18.531	0	1	22498	+		10564	25436	7192	7208	12056	12056					0.06381347977230689
EFVGDKMLD	9	Unmodified	_EFVGDKMLD_					0	0	0			REV__ENSG00000185101|ENST00000332826|ANO9	REV__ENSG00000185101|ENST00000332826|ANO9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2384033203125	2	527.2497	1052.48485	0.08743	4.6097E-05	-0.36112	-0.0001904	-0.27369	-0.0001443	527.2494920916654	68.188	1.7503	67.955	67.175	68.925	-0.23375					69	42	2	0	0	0	0.024021	1	7816	7816		40.778	0	1	306290	+		10565	27734	7193	7209	12057	12057					-0.03929602282300948
EFVLAIVYP	9	Unmodified	_EFVLAIVYP_					0	0	0			REV__ENSG00000164363|ENST00000324642|SLC6A18	REV__ENSG00000164363|ENST00000324642|SLC6A18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7966918945312	2	525.797143	1049.57973	-0.15772	-8.2929E-05	3.2804	0.0017248	3.1227	0.0016419	525.7985135949508	105.86	0.43932	105.86	105.61	106.04	0					23	15	2	0	0	0	0.80658	1	13585	13585		38.806	1.647	1	77037	+		10566	25747	7194	7210	12058	12058					0.056926992511762364
EFVRKKTKT	9	Unmodified	_EFVRKKTKT_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2315063476562	2	568.842948	1135.67134	0.20248	0.00011518	3.6631	0.0020837	3.8656	0.0021989	568.8449184974863	76.544	0.2972	76.293	76.145	76.442	-0.25162					9	6	2	0	0	0	0.024539	1	9102	9102		20.947	0	1	65160			10567	10119	7195	7211	12059	12059					0.10893382668359664
EFVSDGLIV	9	Unmodified	_EFVSDGLIV_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ADGRV1|p.I1126Nfs*11|1|0.23|ENSG00000164199|chr5:90651689-90651690|-/A|frameshift_variant	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2746887207031	2	489.760758	977.506963	-0.43685	-0.00021395	-1.9572	-0.00095856	-2.394	-0.0011725	489.7596425397752	21.346	0.77684	21.256	20.814	21.591	-0.090092					48	15	5	0	0	0	0.024541	1	611	611		28.254	2.6802	1	96456			10568	7239	7196	7212	12060	12060					0.017309454577684846
EFVWALRF	8	Unmodified	_EFVWALRF_					0	0	0		ENSG00000100726|ENST00000262319|TELO2;ENST00000568240.1_1_16:1556929-1559934:+|nuORF	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7932739257812	2	534.287277	1066.56	-1.319	-0.00070473	-2.5705	-0.0013734	-3.8895	-0.0020781	534.2855181501853	44.422	0.35231	44.178	43.904	44.256	-0.2444					16	9	3	0	0	0	0.027866	1	4138	4138		68.485	11.764	1	1269500			10569	2240	7197	7213	12061	12061					0.029383680310729687
EFWFCLTL	8	Unmodified	_EFWFCLTL_					0	0	0		ENST00000412139.6_1_7:86792572-86792851:+|nuORF	ENST00000412139.6_1_7:86792572-86792851:+|nuORF	ENST00000412139.6_1_7:86792572-86792851:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2819213867188	2	529.754421	1057.49429	-1.2288	-0.00065095	-2.9508	-0.0015632	-4.1796	-0.0022141	529.75268012671	55.966	0.66671	55.75	55.412	56.078	-0.21551					35	17	3	0	0	0	0.027866	1	6073	6073		29.15	0	1	585770			10570	13814	7198	7214	12062	12062					-0.032157892061377424
EFYIGLTST	9	Unmodified	_EFYIGLTST_					0	0	0			REV__ENSG00000101310|ENST00000650089|SEC23B	REV__ENSG00000101310|ENST00000650089|SEC23B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3140869140625	2	515.758215	1029.50188	-0.21217	-0.00010943	3.823	0.0019717	3.6108	0.0018623	515.759903281533	98.129	0.97088	98.129	97.549	98.52	0					48	22	4	0	0	0	0.024323	1	12542	12542		35.618	5.3006	1	251090	+		10571	21215	7199	7215	12063	12063					-0.011693584048543926
EFYKIFQL	8	Unmodified	_EFYKIFQL_					0	0	0		ENSG00000166349|ENST00000299440|RAG1;nc|ENSG00000166349|P15918-2|RAG1;RAG1|p.E814Q|1|0.24|ENSG00000166349|chr11:36575744-36575744|G/C|missense_variant	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.346923828125	2	544.294768	1086.57498	-0.52224	-0.00028425	0.45626	0.00024834	-0.065984	-3.5915E-05	544.2950038753308	78.291	1.0646	78.036	77.536	78.6	-0.25471					41	19	3	0	0	0	0.027866	1	9386	9386		68.787	14.022	1	396200			10572	7546	7200	7216	12064	12064					0.03515815108403331
EGAAEAKPEP	10	Unmodified	_EGAAEAKPEP_					0	0	0		nc|ENSG00000165238|Q9Y3S1-3|WNK2;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7898864746094	2	499.743096	997.47164	-0.33574	-0.00016778	-0.3051	-0.00015247	-0.64083	-0.00032025	500.2424666028519	73.351	0.21893	73.351	73.219	73.438	0					10	5	3	0	0	0	0.03519	1	8952	8952		42.864	0	1	113950			10573	7384	7201	7217	12065	12065					-0.02719717070056049
EGAEGRWRE	9	Unmodified	_EGAEGRWRE_					0	0	0			REV__ENST00000479439.5_1_1:43830699-43831981:-|nuORF	REV__ENST00000479439.5_1_1:43830699-43831981:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7669067382812	2	545.257237	1088.49992	-0.81205	-0.00044277	-2.7589	-0.0015043	-3.571	-0.0019471	545.757163032062	58.589	0.26003	58.402	58.24	58.5	-0.18705					10	6	2	0	0	0	0.024477	1	6596	6596		27.882	0	1	54292	+		10574	33398	7202	7218	12066	12066					-0.04078974370099786
EGAERVRHI	9	Unmodified	_EGAERVRHI_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7921142578125	2	533.791247	1065.56794	0.11963	6.3856E-05	2.1642	0.0011552	2.2839	0.0012191	533.7923013109429	19.368	0.54447	19.207	18.984	19.529	-0.16079					29	10	4	0	0	0	0.80003	1	428	428		39.253	4.0521	1	401470			10575	8357	7203	7219	12067	12067					0.037778952805638255
EGAERVRHI	9	Unmodified	_EGAERVRHI_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.791247	1065.56794	0.35914	0.0001917	2.1624	0.0011543	2.5215	0.001346	533.7922745936166	19.518	0.54645	19.318	19.106	19.653	-0.2001	0.055119	-1.1506E-06	NaN	39.253	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308930			10576	8357	7203	7219							0.037778952805638255
EGAGALVKGML	11	Unmodified	_EGAGALVKGML_					0	0	0			REV__ENST00000418635.6_1_6:35310349-35310442:+|nuORF	REV__ENST00000418635.6_1_6:35310349-35310442:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2769775390625	2	523.289159	1044.56377	-0.40635	-0.00021264	-2.1987	-0.0011505	-2.605	-0.0013632	523.2877412903838	56.564	0.47598	56.397	56.082	56.558	-0.1672					17	11	2	0	0	0	0.024747	1	6131	6131		24.519	0	1	404830	+		10577	32121	7204	7220	12068	12068					0.04326669742658851
EGAGCGPG	8	Unmodified	_EGAGCGPG_					0	0	0		ENST00000382031.5_1_15:43818590-43818698:+|nuORF	ENST00000382031.5_1_15:43818590-43818698:+|nuORF	ENST00000382031.5_1_15:43818590-43818698:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	647.8117065429688	1	647.245351	646.238075	-2.2847	-0.0014787	4.0495	0.002621	1.7648	0.0011423	647.247914377863	63.018	1.0089	62.797	62.547	63.556	-0.22097					38	25	2	0	0	0	0.027866	1	7076	7076		21.702	13.471	1	421380			10578	13353	7205	7221	12069	12069					-0.09919471990542661
EGALRKLP	8	Unmodified	_EGALRKLP_					0	0	0		ENST00000482444.5_2_22:31477435-31483924:+|nuORF	ENST00000482444.5_2_22:31477435-31483924:+|nuORF	ENST00000482444.5_2_22:31477435-31483924:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.242919921875	2	442.271627	882.528701	-1.5209	-0.00067264	2.123	0.00093895	0.60214	0.00026631	442.2718737776555	38.356	0.44993	38.383	38.162	38.612	0.027275					25	12	3	0	0	0	0.027866	1	3172	3172		45.952	5.3793	1	298670			10579	15257	7206	7222	12070	12070					0.08273794996978268
EGAPDPRRCTV	11	Unmodified	_EGAPDPRRCTV_					0	0	0		ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;nc|ENSG00000090372|Q9NRL3-2|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF	ENSG00000090372|ENST00000263280|STRN4	ENSG00000090372|ENST00000263280|STRN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.8685607910156	3	400.864511	1199.5717	7.6241	0.0030562	1.7641	0.00070715	9.3881	0.0037634	400.8652067388907	17.789	0.4506	17.85	17.686	18.137	0.06036					17	10	3	0	0	0	1.0592	1	182	182		22.562	0.87584	1	29473			10580	1928	7207	7223	12071	12071					-0.02009803007899791
EGAPRYFSLV	10	Unmodified	_EGAPRYFSLV_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2488403320312	2	569.798206	1137.58186	1.1961	0.00068155	-4.0343	-0.0022988	-2.8382	-0.0016172	569.796170917547	59.869	0.45425	59.672	59.42	59.874	-0.19742					19	11	2	0	0	0	0.03519	1	6609	6609		42.864	0	1	115410	+		10581	20234	7208	7224	12072	12072					0.01857127988978391
EGAQCPAPLS	10	Unmodified	_EGAQCPAPLS_					0	0	0		nc|ENSG00000244122|Q9HAW7-2|UGT1A7;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000241119|ENST00000354728|UGT1A9	nc|ENSG00000244122|Q9HAW7-2|UGT1A7	nc|ENSG00000244122|Q9HAW7-2|UGT1A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7242431640625	2	486.726392	971.438231	0.10589	5.1541E-05	-3.7239	-0.0018125	-3.618	-0.001761	486.72443646718756	100.27	0.70177	100.27	99.787	100.49	0					28	17	3	0	0	0	0.75651	1	12814	12814		63.534	3.2399	1	243700			10582	10778	7209	7225	12073	12073					-0.04863042113595384
EGAQCPAPLS	10	Unmodified	_EGAQCPAPLS_					0	0	0		nc|ENSG00000244122|Q9HAW7-2|UGT1A7;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000241119|ENST00000354728|UGT1A9	nc|ENSG00000244122|Q9HAW7-2|UGT1A7	nc|ENSG00000244122|Q9HAW7-2|UGT1A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7246398925781	2	486.726392	971.438231	-0.13129	-6.3903E-05	-3.3808	-0.0016455	-3.5121	-0.0017094	486.7246888748558	100.2	0.76908	100.21	99.743	100.51	0.010117					31	19	3	0	0	0	0.91678	2	12783	12774;12783		52.937	1.6012	1	314130			10583	10778	7209	7225	12074;12075	12075					-0.04863042113595384
EGAQCPAPLS	10	Unmodified	_EGAQCPAPLS_					0	0	0		nc|ENSG00000244122|Q9HAW7-2|UGT1A7;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000241119|ENST00000354728|UGT1A9	nc|ENSG00000244122|Q9HAW7-2|UGT1A7	nc|ENSG00000244122|Q9HAW7-2|UGT1A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7254638671875	2	486.726392	971.438231	-0.13061	-6.3573E-05	-3.7931	-0.0018462	-3.9237	-0.0019098	486.72452216992014	100.34	0.57467	100.33	100.04	100.62	-0.0050812					31	15	4	0	0	0	0.77808	1	12762	12762		62.107	7.3311	1	312780			10584	10778	7209	7225	12076	12076					-0.04863042113595384
EGAVALRPK	9	Unmodified	_EGAVALRPK_					0	0	0		ENST00000321878.9_1_16:633739-633973:+|nuORF	ENST00000321878.9_1_16:633739-633973:+|nuORF	ENST00000321878.9_1_16:633739-633973:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.310302734375	2	470.782359	939.550165	-0.084926	-3.9982E-05	-0.47022	-0.00022137	-0.55514	-0.00026135	470.7820414055957	48.611	0.62083	48.611	48.174	48.795	0					21	17	2	0	0	0	0.024209	1	4948	4948		39.253	8.7492	1	137710			10585	12214	7210	7226	12077	12077					0.07797180025715988
EGAYGKQGP	9	Unmodified	_EGAYGKQGP_					0	0	0			REV__ENSG00000171502|ENST00000370571|COL24A1	REV__ENSG00000171502|ENST00000370571|COL24A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.26605224609375	2	453.719424	905.424296	-0.70496	-0.00031985	1.6235	0.0007366	0.91851	0.00041674	453.7200059158182	29.566	2.1009	29.321	27.635	29.736	-0.24524					60	49	2	0	0	0	0.024205	1	1772	1772		35.618	0	1	96868	+		10586	26575	7211	7227	12078	12078					-0.03219951550386213
EGCCCCEPG	9	Unmodified	_EGCCCCEPG_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7607421875	2	450.621367	899.22818	-0.23188	-0.00010449	-3.9087	-0.0017614	-4.1406	-0.0018658	450.61869923318125	38.816	0.24479	38.816	38.761	39.006	0					11	6	2	0	0	0	0.024541	1	3283	3283		12.207	8.2216	1	232190			10587	9960	7212	7228	12079	12079					-0.22546487374097524
EGCFSSRGDP	10	Unmodified	_EGCFSSRGDP_					0	0	0			REV__ENSG00000110446|ENST00000227880|SLC15A3	REV__ENSG00000110446|ENST00000227880|SLC15A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7637329101562	2	527.716556	1053.41856	-1.0864	-0.00057331	0.44934	0.00023712	-0.63706	-0.00033619	528.2189029103206	62.337	0.14998	62.16	62.079	62.229	-0.17781					5	3	2	0	0	0	0.03519	1	7012	7012		34.173	0	1	39465	+		10588	21859	7213	7229	12080	12080					-0.10601418124360862
EGCFYPLL	8	Unmodified	_EGCFYPLL_					0	0	0			REV__ENST00000368494.3_1_6:118028474-118028534:+|nuORF	REV__ENST00000368494.3_1_6:118028474-118028534:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2929382324219	2	471.225497	940.43644	-0.1989	-9.3726E-05	1.378	0.00064936	1.1791	0.00055563	471.2275693822414	50.194	0.29923	50.194	50.146	50.445	0					9	8	2	0	0	0	0.027866	1	5278	5278		46.766	13.251	1	95705	+		10589	31055	7214	7230	12081	12081					-0.03616051131541553
EGCNFLYWLE	10	Unmodified	_EGCNFLYWLE_					0	0	0			REV__ENST00000609345.1_1_17:12920217-12920930:-|nuORF	REV__ENST00000609345.1_1_17:12920217-12920930:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.7491455078125	3	425.190113	1272.54851	-0.013865	-5.8953E-06	1.5929	0.00067729	1.5791	0.0006714	425.52556763814925	26.039	0.49479	25.87	25.623	26.117	-0.16939					28	14	3	0	0	0	0.03519	1	1282	1282		10.104	0	1	355160	+		10590	35981	7215	7231	12082	12082					-0.0768624184518103
EGCSIYVVKQT	11	Unmodified	_EGCSIYVVKQT_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.5428466796875	3	409.541034	1225.60127	-0.24944	-0.00010215	3.5015	0.001434	3.2521	0.0013319	409.54270309803894	22.128	1.2295	21.926	21.517	22.747	-0.20198					86	25	6	0	0	0	0.96481	1	723	723		44.639	8.3218	1	2848400	+		10591	23873	7216	7232	12083	12083					-0.002502837824067683
EGCVALSTMS	10	Unmodified	_EGCVALSTMS_					0	0	0		ENST00000335154.9_1_12:50039435-50039543:-|nuORF	ENST00000335154.9_1_12:50039435-50039543:-|nuORF	ENST00000335154.9_1_12:50039435-50039543:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.21826171875	2	499.220085	996.425618	0.37475	0.00018708	-3.9535	-0.0019737	-3.5787	-0.0017866	499.2180303778393	32.423	0.83678	32.23	31.942	32.779	-0.19261					51	19	4	0	0	0	1.0781	1	2224	2224		35.618	1.4457	1	2887300			10592	12389	7217	7233	12084	12084					-0.07273821568139738
EGDDFGQLAL	10	Unmodified	_EGDDFGQLAL_					0	0	0		ENST00000479866.5_1_12:48143124-48152369:-|nuORF;ENST00000482843.5_1_12:48142600-48152369:-|nuORF;nc|ENSG00000079337|O95398-2|RAPGEF3;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3	ENST00000479866.5_1_12:48143124-48152369:-|nuORF	ENST00000479866.5_1_12:48143124-48152369:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2636108398438	2	532.748379	1063.4822	-0.39308	-0.00020941	1.2104	0.00064483	0.8173	0.00043542	532.7487244277195	30.916	0.40973	30.763	30.597	31.006	-0.15231					14	9	2	0	0	0	0.03519	1	1975	1975		54.776	20.604	1	99966			10593	1661	7218	7234	12085	12085					-0.04699734415612511
EGDEEGPSGAS	11	Unmodified	_EGDEEGPSGAS_					0	0	0		ENSG00000166326|ENST00000299413|TRIM44;ENST00000532066.1_1_11:35745832-35827932:+|nuORF	ENSG00000166326|ENST00000299413|TRIM44	ENSG00000166326|ENST00000299413|TRIM44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.799560546875	2	517.699083	1033.38361	-0.39845	-0.00020628	-0.28007	-0.00014499	-0.67852	-0.00035127	517.6995198141647	104.49	0.20486	104.36	104.27	104.47	-0.12928					5	4	2	0	0	0	0.024774	1	13008	13008		30.318	4.8675	1	12133			10594	7541	7219	7235	12086	12086					-0.13174382451302336
EGDGVWPE	8	Unmodified	_EGDGVWPE_					0	0	0			REV__ENSG00000198040|ENST00000539354|ZNF84	REV__ENSG00000198040|ENST00000539354|ZNF84	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.7264099121094	2	444.690333	887.366112	0.12853	5.7158E-05	-2.9455	-0.0013098	-2.817	-0.0012527	444.68891259185204	38.956	0.45997	38.73	38.523	38.983	-0.2257					20	12	2	0	0	0	0.027866	1	3269	3269		44.531	2.0566	1	191620	+		10595	28377	7220	7236	12087	12087					-0.08207633195661401
EGDHEERERER	11	Unmodified	_EGDHEERERER_					0	0	0		SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|63|2|anti-sense	SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|63|2|anti-sense	SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|63|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.75335693359375	3	481.21867	1440.63418	-0.17842	-8.5859E-05	-0.094146	-4.5305E-05	-0.27257	-0.00013116	481.2184084632645	48.265	0.44466	48.265	48.037	48.482	0					31	12	3	0	0	0	0.024856	1	4870	4870		18.531	12.832	1	290960			10596	38023	7221	7237	12088	12088					-0.06850985406026666
EGDKLFVM	8	Unmodified	_EGDKLFVM_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7661437988281	2	469.736228	937.457904	0.62828	0.00029513	3.5058	0.0016468	4.134	0.0019419	469.7377013342754	28.631	0.37316	28.712	28.533	28.907	0.080811					14	8	2	0	0	0	0.027866	1	1621	1621		35.201	13.241	1	84629	+		10597	28092	7222	7238	12089	12089					-0.013326661028258968
EGDNRQRVA	9	Unmodified	_EGDNRQRVA_					0	0	0			REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7688598632812	2	522.762686	1043.51082	-0.9898	-0.00051743	1.5935	0.00083301	0.60367	0.00031558	522.7633993315707	55.516	0.51503	55.614	55.484	55.999	0.098015					38	13	3	0	0	0	0.024457	1	6053	6053		10.265	0	1	2279900	+		10598	30963	7223	7239	12090	12090					-0.009195719958142945
EGDPRFSFL	9	Unmodified	_EGDPRFSFL_					0	0	0		ENSG00000106991|ENST00000373203|ENG;nc|ENSG00000106991|P17813-2|ENG;DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion	ENSG00000106991|ENST00000373203|ENG;DENND1A-ENG|1|fusion	DENND1A-ENG|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8052978515625	2	534.261456	1066.50836	-0.64193	-0.00034296	-4.4595	-0.0023826	-5.1015	-0.0027255	534.2590233831314	45.048	0.28577	45.092	44.894	45.18	0.043877					10	7	2	0	0	0	0.024021	1	4270	4270		40.778	0	1	83637			10599	630;2822	7224	7240	12091	12091					-0.02223420453469771
EGDQLSLQIQ	10	Unmodified	_EGDQLSLQIQ_					0	0	0		ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8355712890625	2	565.788035	1129.56152	0.39196	0.00022177	3.5558	0.0020118	3.9478	0.0022336	565.7899626475601	21.909	0.52507	21.727	21.44	21.965	-0.1823					16	10	2	0	0	0	0.03519	1	724	724		30.318	6.115	1	75986			10600	3910	7225	7241	12092	12092					0.0019191253854842216
EGDTPLHDAI	10	Unmodified	_EGDTPLHDAI_					0	0	0		ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2636108398438	2	534.253828	1066.4931	-0.49318	-0.00026348	-0.60578	-0.00032364	-1.099	-0.00058712	534.2532058938309	30.745	0.25504	30.594	30.428	30.683	-0.15064					7	5	2	0	0	0	0.03519	1	1975	1975		34.173	0	1	36613			10601	2347	7226	7242	12093	12093					-0.0374833204132301
EGEAVGLIISI	11	Unmodified	_EGEAVGLIISI_					0	0	0			REV__nc|ENSG00000145041|Q9Y4B6-2|DCAF1	REV__nc|ENSG00000145041|Q9Y4B6-2|DCAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7982177734375	2	550.813522	1099.61249	-0.51599	-0.00028422	3.5234	0.0019407	3.0074	0.0016565	550.8154887111803	55.792	0.40724	55.636	55.48	55.887	-0.15602					15	10	2	0	0	0	0.024785	1	6155	6155		45.972	6.7194	1	100040	+		10602	24380	7227	7243	12094	12094					0.06666861583403261
EGECYLLLF	9	Unmodified	_EGECYLLLF_					0	0	0		ENST00000296666.12_1_5:126889918-126890026:+|nuORF	ENST00000296666.12_1_5:126889918-126890026:+|nuORF	ENST00000296666.12_1_5:126889918-126890026:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2803955078125	2	543.762443	1085.51033	-0.4807	-0.00026138	-1.0943	-0.00059505	-1.575	-0.00085643	543.7618243267003	62.046	0.19762	61.833	61.774	61.972	-0.21375					8	4	2	0	0	0	0.024487	1	6977	6977		40.573	6.4001	1	161740			10603	11849	7228	7244	12095	12095					-0.029001277598808883
EGEEPGSEVV	10	Unmodified	_EGEEPGSEVV_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.271728515625	2	516.230019	1030.44548	-0.30805	-0.00015902	0.42047	0.00021706	0.11243	5.8038E-05	516.2303653280497	48.918	0.34534	48.918	48.761	49.106	0					11	9	2	0	0	0	0.03519	1	5013	5013		76.774	25.439	1	250410			10604	7836	7229	7245	12096	12096					-0.0685203103216736
EGEGTEALIL	10	Unmodified	_EGEGTEALIL_					0	0	0			REV__ENSG00000171103|ENST00000306108|TRMT61B	REV__ENSG00000171103|ENST00000306108|TRMT61B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2998657226562	2	516.266404	1030.51826	-0.36891	-0.00019046	-3.5198	-0.0018171	-3.8887	-0.0020076	516.7659699781414	104.24	0.18499	104.23	104.07	104.25	-0.0032196					5	4	2	0	0	0	0.03519	1	13295	13295		44.117	9.9443	1	33620	+		10605	26542	7230	7246	12097	12097					0.004217227612343777
EGEMIWPEEGQ	11	Oxidation (M)	_EGEM(Oxidation (M))IWPEEGQ_		EGEM(1)IWPEEGQ		EGEM(59)IWPEEGQ	0	0	1			REV__nc|ENSG00000291092|Q13401|PMS2P3	REV__nc|ENSG00000291092|Q13401|PMS2P3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.85369873046875	3	440.851937	1319.53398	-0.037581	-1.6567E-05	3.5969	0.0015857	3.5593	0.0015691	440.8534410776844	31.711	2.4532	31.558	31.232	33.685	-0.15283					142	60	4	0	0	0	0.78452	1	2107	2107		58.63	18.756	1	2753900	+		10606	32127	7231	7247	12098	12098		889			-0.11300358784023956
EGEMIWPEEGQ	11	Oxidation (M)	_EGEM(Oxidation (M))IWPEEGQ_					0	0	1			REV__nc|ENSG00000291092|Q13401|PMS2P3	REV__nc|ENSG00000291092|Q13401|PMS2P3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	440.851937	1319.53398	-0.037581	-1.6567E-05	3.5969	0.0015857	3.5593	0.0015691	440.8534410776844	31.711	2.4532	31.558	31.232	33.685	-0.15283	0.033834	-3.9842E-05	NaN	58.63	142	60	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2753900	+		10607	32127	7231	7247				889			-0.11300358784023956
EGEPHGASLL	10	Unmodified	_EGEPHGASLL_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7142028808594	2	505.251089	1008.48762	-0.58386	-0.000295	0.99744	0.00050396	0.41357	0.00020896	505.25153724837253	28.832	0.69166	28.663	28.337	29.029	-0.16897					27	15	2	0	0	0	0.03519	1	1750	1750		42.396	0	1	226750	+		10608	20419	7232	7248	12099	12099					-0.01628010833121607
EGESARWPP	9	Unmodified	_EGESARWPP_					0	0	0			REV__nc|ENSG00000158019|Q9NXR7-1|BABAM2	REV__nc|ENSG00000158019|Q9NXR7-1|BABAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.321533203125	2	514.743431	1027.47231	-0.28885	-0.00014868	0.84363	0.00043426	0.55479	0.00028557	514.7435067405571	71.429	1.4044	71.44	70.55	71.954	0.010735					70	35	3	0	0	0	0.024025	1	8615	8615		71.877	32.625	1	2138300	+		10609	36817	7233	7249	12100	12100					-0.04032877630334042
EGESEPQAEGE	11	Unmodified	_EGESEPQAEGE_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.2307739257812	2	581.230747	1160.44694	-1.3832	-0.00080394	2.0386	0.0011849	0.65547	0.00038098	581.231828082619	28.587	0.80265	28.342	28.121	28.924	-0.24524					51	18	4	0	0	0	0.79111	1	1684	1684		58.23	0.41864	1	1691400	+		10610	27592	7234	7250	12101	12101					-0.126864417340812
EGESLLLSV	9	Unmodified	_EGESLLLSV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7582702636719	2	473.758215	945.501877	-0.57184	-0.00027091	0.5951	0.00028193	0.023256	1.1018E-05	473.758466690893	82.687	1.1226	82.547	82.216	83.339	-0.14014					56	25	5	0	0	0	0.72875	1	9962	9962		44.117	1.7207	1	1183700			10611	4256;18250	7235	7251	12102	12102					0.026946415951670133
EGETKMVKM	9	Oxidation (M)	_EGETKMVKM(Oxidation (M))_		EGETKMVKM(1)		EGETKM(-63)VKM(63)	0	0	1		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.7548828125	2	534.756835	1067.49912	-0.15269	-8.1651E-05	-2.8322	-0.0015146	-2.9849	-0.0015962	534.7546621679529	56.513	1.2378	56.298	55.959	57.197	-0.21474					80	32	4	0	0	0	0.31037	1	6117	6117		74.255	17.534	2	6152400			10612	2556	7236	7252	12103	12103		98			-0.03193273125680207
EGETPAWLE	9	Unmodified	_EGETPAWLE_					0	0	0		nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF;ENST00000477741.5_1_20:57562773-57565044:+|nuORF;nc|ENSG00000101158|Q8IXH7|NELFCD;ENSG00000101158|ENST00000652272|NELFCD	nc|ENSG00000101158|Q8IXH7-3|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.26708984375	2	516.237647	1030.46074	-1.105	-0.00057044	4.3137	0.0022269	3.2087	0.0016564	516.2397346121784	31.151	0.71152	31.151	30.838	31.549	0					30	16	3	0	0	0	0.024457	1	2093	2093		37.159	7.3176	1	189670			10613	15268;18130	7237	7253	12104	12104					-0.053271194443368586
EGETPAWLE	9	Unmodified	_EGETPAWLE_					0	0	0		nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF;ENST00000477741.5_1_20:57562773-57565044:+|nuORF;nc|ENSG00000101158|Q8IXH7|NELFCD;ENSG00000101158|ENST00000652272|NELFCD	nc|ENSG00000101158|Q8IXH7-3|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.237647	1030.46074	-0.51063	-0.0002636	3.2245	0.0016646	2.7139	0.001401	516.2388253449667	31.152	0.12032	30.911	30.834	30.954	-0.24109	-0.061898	-0.0011476	NaN	37.159	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31618			10614	15268;18130	7237	7253							-0.053271194443368586
EGFGRGDRHGE	11	Unmodified	_EGFGRGDRHGE_					0	0	0			REV__ENST00000320389.11_1_2:241737101-241737215:-|nuORF	REV__ENST00000320389.11_1_2:241737101-241737215:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2109680175781	3	406.186642	1215.5381	0.089442	3.633E-05	1.7248	0.00070058	1.8142	0.00073691	406.52307156521556	27.315	0.25459	27.147	26.931	27.186	-0.16816					6	5	2	0	0	0	0.024765	1	1494	1494		47.228	0	1	14619	+		10615	30333	7238	7254	12105	12105					-0.06105088455410623
EGFHYLVF	8	Unmodified	_EGFHYLVF_					0	0	0		nc|ENSG00000148660|Q13555-9|CAMK2G;ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000148660|Q13555-6|CAMK2G;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000058404|Q13554-2|CAMK2B;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7763977050781	2	506.25036	1010.48617	0.93801	0.00047487	-2.4239	-0.0012271	-1.4859	-0.00075225	506.2491801414638	51.406	0.38509	51.295	51.09	51.475	-0.11163					12	9	2	0	0	0	0.027866	1	5261	5261		26.796	0	1	83923			10616	5808;18371	7239	7255	12106	12106					-0.018656001312365333
EGFHYLVF	8	Unmodified	_EGFHYLVF_					0	0	0		nc|ENSG00000148660|Q13555-9|CAMK2G;ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000148660|Q13555-6|CAMK2G;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000058404|Q13554-2|CAMK2B;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.25036	1010.48617	-1.3177	-0.0006671	-0.65116	-0.00032965	-1.9689	-0.00099675	506.24957612439715	51.713	0.30281	51.444	51.281	51.584	-0.26903	0.074761	0.0012484	NaN	35.201	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86200			10617	5808;18371	7239	7255							-0.018656001312365333
EGFILIRY	8	Unmodified	_EGFILIRY_					0	0	0			REV__ENST00000480920.5_1_9:99300980-99327106:-|nuORF	REV__ENST00000480920.5_1_9:99300980-99327106:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7140808105469	2	505.78711	1009.55967	-0.45425	-0.00022975	-4.1414	-0.0020947	-4.5956	-0.0023244	505.78511575652743	29.31	0.38357	29.161	28.912	29.296	-0.14952					13	8	2	0	0	0	0.027866	1	1732	1732		42.474	14.592	1	159140	+		10618	20680	7240	7256	12107	12107					0.055269483112283524
EGFSSLISLI	10	Unmodified	_EGFSSLISLI_					0	0	0		SLC4A4|p.F594L|1|0.36|ENSG00000080493|chr4:71472847-71472847|T/C|missense_variant	SLC4A4|p.F594L|1|0.36|ENSG00000080493|chr4:71472847-71472847|T/C|missense_variant	SLC4A4|p.F594L|1|0.36|ENSG00000080493|chr4:71472847-71472847|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2725830078125	2	533.294965	1064.57538	0.15585	8.3113E-05	-1.7669	-0.00094227	-1.611	-0.00085916	533.2937093415159	88.207	0.62378	88.179	87.852	88.476	-0.027657					23	14	2	0	0	0	0.03519	1	11077	11077		58.782	0	1	152460			10619	37894	7241	7257	12108	12108					0.04567190037619184
EGFSSLISLI	10	Unmodified	_EGFSSLISLI_					0	0	0		SLC4A4|p.F594L|1|0.36|ENSG00000080493|chr4:71472847-71472847|T/C|missense_variant	SLC4A4|p.F594L|1|0.36|ENSG00000080493|chr4:71472847-71472847|T/C|missense_variant	SLC4A4|p.F594L|1|0.36|ENSG00000080493|chr4:71472847-71472847|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2733764648438	2	533.294965	1064.57538	0.28319	0.00015103	-1.1625	-0.00061994	-0.87928	-0.00046891	533.2941518083162	88.27	0.62598	88.289	87.87	88.496	0.018555					23	14	2	0	0	0	0.03519	1	11070	11070		58.782	20.97	1	250180			10620	37894	7241	7257	12109	12109					0.04567190037619184
EGFSYSPVLY	10	Unmodified	_EGFSYSPVLY_					0	0	0			REV__ENSG00000184210|ENST00000333026|DGAT2L6	REV__ENSG00000184210|ENST00000333026|DGAT2L6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.79248046875	2	581.276772	1160.53899	-0.06769	-3.9347E-05	0.21691	0.00012609	0.14922	8.6739E-05	581.2766900874387	77.829	0.42429	77.567	77.27	77.694	-0.26202					14	9	2	0	0	0	0.03519	1	9256	9256		26.693	6.6961	1	170920	+		10621	27647	7242	7258	12110	12110					-0.034856868590850354
EGFSYSPVLY	10	Unmodified	_EGFSYSPVLY_					0	0	0			REV__ENSG00000184210|ENST00000333026|DGAT2L6	REV__ENSG00000184210|ENST00000333026|DGAT2L6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.276772	1160.53899	0.084405	4.9062E-05	0.31105	0.0001808	0.39545	0.00022987	581.2769083415762	77.74	0.58971	77.498	77.233	77.823	-0.24232	-0.043323	0.00016258	NaN	26.693	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172890	+		10622	27647	7242	7258							-0.034856868590850354
EGFSYSPVLY	10	Unmodified	_EGFSYSPVLY_					0	0	0			REV__ENSG00000184210|ENST00000333026|DGAT2L6	REV__ENSG00000184210|ENST00000333026|DGAT2L6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.276772	1160.53899	-0.72361	-0.00042062	-0.59186	-0.00034403	-1.3155	-0.00076465	581.2764688266444	77.72	0.34317	77.558	77.268	77.611	-0.16196	0.017197	-0.0008871	NaN	26.693	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93656	+		10623	27647	7242	7258							-0.034856868590850354
EGFTVFQI	8	Unmodified	_EGFTVFQI_					0	0	0		nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENSG00000169758|ENST00000388942|TMEM266	nc|ENSG00000169758|Q2M3C6-2|TMEM266	nc|ENSG00000169758|Q2M3C6-2|TMEM266	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2560729980469	2	470.742368	939.470183	-0.41086	-0.00019341	-3.8067	-0.001792	-4.2176	-0.0019854	470.7403771442745	44.664	0.79147	44.664	44.215	45.006	0					35	22	2	0	0	0	0.027866	1	4281	4281		23.042	0	1	284990			10624	7972	7243	7259	12111	12111					-0.001973063681361964
EGFYWCHEA	9	Unmodified	_EGFYWCHEA_					0	0	0			REV__TAAR1|p.I140Mfs*7|1|0.32|ENSG00000146399|chr6:132645583-132645584|AA/-|frameshift_variant	REV__TAAR1|p.I140Mfs*7|1|0.32|ENSG00000146399|chr6:132645583-132645584|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.8327026367188	2	571.224017	1140.43348	1.0939	0.00062488	-0.55139	-0.00031497	0.54254	0.00030991	571.2229547727247	74.235	0.12793	74.235	74.128	74.256	0					4	2	2	0	0	0	0.024506	1	9071	9071		23.042	0	1	45742	+		10625	24486	7244	7260	12112	12112					-0.1311192625635158
EGGALRAQ	8	Unmodified	_EGGALRAQ_					0	0	0		ENSG00000215375|ENST00000400159|MYL5	ENSG00000215375|ENST00000400159|MYL5	ENSG00000215375|ENST00000400159|MYL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.53851318359375	2	401.214309	800.414065	0.93493	0.00037511	0.46143	0.00018513	1.3964	0.00056024	401.21432060573255	25.194	0.72412	25.023	24.647	25.371	-0.17078					38	16	4	0	0	0	0.027866	1	1211	1211		16.473	0	1	520260			10626	10588	7245	7261	12113	12113					0.00587485515040953
EGGCIWVK	8	Unmodified	_EGGCIWVK_					0	0	0			REV__GALNT5|p.M708I|1|0.11|ENSG00000136542|chr2:157300684-157300684|G/A|missense_variant	REV__GALNT5|p.M708I|1|0.11|ENSG00000136542|chr2:157300684-157300684|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.20941162109375	2	446.223288	890.432024	-1.1017	-0.00049159	4.3209	0.0019281	3.2192	0.0014365	446.22516110334743	38.916	0.66129	38.943	38.691	39.352	0.027008					45	17	4	0	0	0	0.027866	1	3284	3284		3.1592	0	1	1442600	+		10627	36060	7246	7262	12114	12114					-0.017575155544591325
EGGDALLVSL	10	Unmodified	_EGGDALLVSL_					0	0	0		ENSG00000241945|ENST00000291576|PWP2;PWP2-TRAPPC10|1|fusion	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.27978515625	2	487.263665	972.512776	-0.15125	-7.3698E-05	3.2448	0.0015811	3.0935	0.0015074	487.2646376912279	50.786	0.43595	50.636	50.39	50.826	-0.14916					21	12	3	0	0	0	0.03519	1	5341	5341		25.574	6.2141	1	164210			10628	10788	7247	7263	12115	12115					0.025420439694244124
EGGDLRADLN	10	Unmodified	_EGGDLRADLN_					0	0	0			REV__nc|ENSG00000138028|Q99674-3|CGREF1	REV__nc|ENSG00000138028|Q99674-3|CGREF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2735595703125	2	530.256902	1058.49925	-0.27172	-0.00014408	2.9526	0.0015656	2.6809	0.0014215	530.2589634947117	46.206	0.60977	46.257	45.864	46.474	0.051395					29	17	3	0	0	0	0.03519	1	4459	4459		36.447	15.5	1	240700	+		10629	36705	7248	7264	12116	12116					-0.027658138098104246
EGGDSATLIL	10	Unmodified	_EGGDSATLIL_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7943115234375	2	488.253297	974.492041	-0.75887	-0.00037052	0.47284	0.00023087	-0.28603	-0.00013966	488.2535337192983	62.887	0.32492	62.887	62.729	63.054	0					13	7	2	0	0	0	0.03519	1	7315	7315		56.721	9.0637	1	266620	+		10630	28647	7249	7265	12117	12117					0.003774535897946407
EGGEKGRLQ	9	Unmodified	_EGGEKGRLQ_					0	0	0			REV__ENST00000301770.10_1_11:61032458-61032613:-|nuORF	REV__ENST00000301770.10_1_11:61032458-61032613:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2502746582031	2	487.256705	972.498858	-0.39406	-0.00019201	0.25513	0.00012431	-0.13893	-6.7695E-05	487.2566795990196	28.609	0.57045	28.69	28.411	28.981	0.080812					23	13	2	0	0	0	0.023635	1	1657	1657		31.53	0	1	392590	+		10631	30064	7250	7266	12118	12118					0.011508112609931231
EGGFFYSFG	9	Unmodified	_EGGFFYSFG_					0	0	0			REV__SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|24|3|sense	REV__SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|24|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.7141418457031	2	505.71635	1009.41815	-1.0134	-0.00051249	-4.0397	-0.002043	-5.0531	-0.0025554	505.7147543516341	29.365	1.4537	29.12	28.241	29.695	-0.24524					105	33	5	0	0	0	0.70186	1	1765	1765		45.952	3.5558	1	1846100	+		10632	37617	7251	7267	12119	12119					-0.08618469781890781
EGGFRITIV	9	Unmodified	_EGGFRITIV_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2505187988281	2	496.282192	990.549831	-0.79274	-0.00039342	3.2845	0.0016301	2.4918	0.0012366	496.28373724445214	25.61	0.71754	25.383	24.842	25.559	-0.22683					24	16	2	0	0	0	0.023837	1	1202	1202		45.972	6.7194	1	183790	+		10633	22996	7252	7268	12120	12120					0.05417760305851971
EGGGGPHSK	9	Unmodified	_EGGGGPHSK_					0	0	0			REV__ENST00000587019.5_1_19:13870037-13873207:+|nuORF	REV__ENST00000587019.5_1_19:13870037-13873207:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.87677001953125	2	413.196116	824.37768	-0.42263	-0.00017463	1.3745	0.00056793	0.95185	0.0003933	413.1970902508117	30.077	0.32279	30.077	29.814	30.137	0					9	7	2	0	0	0	0.024397	1	1897	1897		24.519	7.0512	1	27178	+		10634	35617	7253	7269	12121	12121					-0.0415339138166928
EGGILLNL	8	Unmodified	_EGGILLNL_					0	0	0			REV__NBEA|p.V100I|1|0.09|ENSG00000172915|chr13:35040936-35040936|G/A|missense_variant	REV__NBEA|p.V100I|1|0.09|ENSG00000172915|chr13:35040936-35040936|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2296142578125	2	414.744911	827.475269	0.40863	0.00016948	-0.31846	-0.00013208	0.090174	3.7399E-05	414.744584510931	27.178	0.52634	27.178	26.908	27.435	0					29	13	3	0	0	0	0.027866	1	1455	1455		31.955	0	1	159860	+		10635	36419	7254	7270	12122	12122					0.054629974944646165
EGGKGPRLR	9	Unmodified	_EGGKGPRLR_					0	0	0		nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF	nc|ENSG00000168071|A6NC98-4|CCDC88B	nc|ENSG00000168071|A6NC98-4|CCDC88B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2880859375	2	485.283057	968.551562	-0.82589	-0.00040079	0.18452	8.9543E-05	-0.64138	-0.00031125	485.28324341775743	21.56	1.7451	21.56	21.195	22.94	0					108	36	6	0	0	0	0.39228	1	717	717		66.429	5.4573	1	9057800			10636	7783	7255	7271	12123	12123					0.06602814114455668
EGGLELLPM	9	Unmodified	_EGGLELLPM_					0	0	0			REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.73541259765625	2	479.749336	957.484119	0.061357	2.9436E-05	3.3517	0.001608	3.4131	0.0016374	479.7521461488361	60.02	0.11385	59.772	59.686	59.8	-0.24842					4	2	2	0	0	0	0.024487	1	6642	6642		31.955	7.7521	1	123400	+		10637	21989	7256	7272	12124	12124					0.0036760306865062375
EGGLTASILL	10	Unmodified	_EGGLTASILL_					0	0	0			REV__ENSG00000078725|ENST00000265922|BRINP1	REV__ENSG00000078725|ENST00000265922|BRINP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.27935791015625	2	487.281857	972.549162	-0.018614	-9.0701E-06	-1.0908	-0.00053154	-1.1094	-0.00054061	487.28196996498605	77.649	0.8777	77.649	77.082	77.959	0					28	20	2	0	0	0	0.03519	1	9526	9526		27.882	3.6795	1	125350	+		10638	20618	7257	7273	12125	12125					0.06178920866148019
EGGNRVYELY	10	Unmodified	_EGGNRVYELY_					0	0	0			REV__AXIN2|p.S202N|1|0.42|ENSG00000168646|chr17:65558016-65558016|C/T|missense_variant	REV__AXIN2|p.S202N|1|0.42|ENSG00000168646|chr17:65558016-65558016|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5148620605469	3	400.527894	1198.56185	1.0327	0.00041362	-4.0709	-0.0016305	-3.0383	-0.0012169	400.5261726259476	24.65	0.9901	24.475	23.743	24.733	-0.17484					35	22	2	0	0	0	0.03519	1	1048	1048		17.833	0	1	141120	+		10639	19193	7258	7274	12126	12126					-0.029486677416116436
EGGPFARRR	9	Unmodified	_EGGPFARRR_					0	0	0			REV__ENST00000524990.5_3_11:44087748-44089254:+|nuORF	REV__ENST00000524990.5_3_11:44087748-44089254:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3084106445312	2	523.286131	1044.55771	-0.54449	-0.00028492	4.4904	0.0023498	3.946	0.0020649	523.7899634352216	31.059	0.46646	31.071	30.791	31.257	0.011799					26	10	3	0	0	0	0.024436	1	2031	2031		30.504	0	1	259200	+		10640	34404	7259	7275	12127	12127					0.037213323459809544
EGGPHIRRA	9	Unmodified	_EGGPHIRRA_					0	0	0			REV__ENST00000508276.1_1_4:2933242-2933551:-|nuORF	REV__ENST00000508276.1_1_4:2933242-2933551:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.76385498046875	2	496.772857	991.531161	-0.48462	-0.00024075	-3.4842	-0.0017309	-3.9689	-0.0019716	496.77074699425805	42.557	0.34124	42.328	42.103	42.444	-0.22864					12	8	2	0	0	0	0.024457	1	3840	3840		29.15	9.1528	1	144350	+		10641	34062	7260	7276	12128	12128					0.03505643454661822
EGGPHLAASF	10	Unmodified	_EGGPHLAASF_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.77215576171875	2	493.240524	984.466495	-0.43308	-0.00021361	-3.8389	-0.0018935	-4.2719	-0.0021071	493.2383998763566	20.866	0.76775	20.762	20.522	21.29	-0.10477					25	15	3	0	0	0	0.03519	1	593	593		42.396	0	1	60366	+		10642	27813	7261	7277	12129	12129					-0.026359761420053474
EGGPLVVLL	9	Unmodified	_EGGPLVVLL_					0	0	0		ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.1782531738281	2	448.776211	895.537869	-0.16964	-7.6132E-05	2.9919	0.0013427	2.8223	0.0012666	448.7772663265761	52.551	0.94884	52.424	52.039	52.988	-0.12705					29	23	2	0	0	0	0.024443	1	5527	5527		12.959	0	1	67828			10643	2601	7262	7278	12130	12130					0.08592143562668753
EGGRQGLVL	9	Unmodified	_EGGRQGLVL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.763671875	2	464.764166	927.513779	0.45236	0.00021024	-0.43432	-0.00020185	0.018046	8.3871E-06	464.76370340328424	21.65	0.66607	21.473	21.209	21.875	-0.17721					33	13	4	0	0	0	0.87448	1	715	715		34.173	0	1	402430			10644	9763	7263	7279	12131	12131					0.047123031289856954
EGGRRRRW	8	Unmodified	_EGGRRRRW_					0	0	0			REV__ENST00000457928.6_1_3:176816297-176915038:-|nuORF	REV__ENST00000457928.6_1_3:176816297-176915038:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2845458984375	2	536.797198	1071.57984	-0.32615	-0.00017508	2.9924	0.0016063	2.6662	0.0014312	536.7986539045022	50.708	0.44132	50.528	50.282	50.723	-0.18071					19	11	2	0	0	0	0.027866	1	5189	5189		15.642	4.7763	1	241630	+		10645	32814	7264	7280	12132	12132					0.04691556814395881
EGGRVLIGD	9	Unmodified	_EGGRVLIGD_					0	0	0			REV__ENST00000368433.5_1_1:154955906-154955999:+|nuORF	REV__ENST00000368433.5_1_1:154955906-154955999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2589111328125	2	458.248349	914.482145	-0.65402	-0.0002997	0.16842	7.7178E-05	-0.4856	-0.00022253	458.2483141986317	28.629	0.50108	28.629	28.318	28.82	0					27	11	3	0	0	0	0.024261	1	1641	1641		23.523	0	1	300320	+		10646	31053	7265	7281	12133	12133					0.02148310375048368
EGGVAAPELV	10	Unmodified	_EGGVAAPELV_					0	0	0			REV__ENSG00000115548|ENST00000312912|KDM3A	REV__ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718505859375	2	471.250557	940.486562	0.69071	0.0003255	1.9752	0.00093082	2.6659	0.0012563	471.25149114066926	39.524	0.73878	39.524	39.323	40.062	0					27	20	2	0	0	0	0.03519	1	3459	3459		49.442	0	1	122730	+		10647	22212	7266	7282	12134	12134					0.013937747979412052
EGGVTESLRA	10	Unmodified	_EGGVTESLRA_					0	0	0			REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.818603515625	2	509.76182	1017.50909	-0.70527	-0.00035952	4.006	0.0020421	3.3007	0.0016826	509.7637114198565	75.059	0.39474	75.059	74.875	75.269	0					20	9	3	0	0	0	0.03519	1	9175	9175		58.23	0	1	197120	+		10648	30421	7267	7283	12135	12135					0.0010337419557799876
EGGVTESLRA	10	Unmodified	_EGGVTESLRA_					0	0	0			REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8183898925781	2	509.76182	1017.50909	-0.14906	-7.5984E-05	3.8824	0.0019791	3.7333	0.0019031	509.76353375332144	75.131	0.3536	75.142	74.973	75.326	0.010376					19	8	3	0	0	0	0.03519	1	9117	9117		51.193	0	1	188760	+		10649	30421	7267	7283	12136	12136					0.0010337419557799876
EGGWSGKVI	9	Unmodified	_EGGWSGKVI_					0	0	0		LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|39|3|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|39|3|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|39|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.2447204589844	2	466.745442	931.476331	-0.36389	-0.00016985	3.7055	0.0017295	3.3417	0.0015597	466.7469057042157	32.482	0.673	32.494	32.26	32.933	0.011799					24	17	2	0	0	0	0.024381	1	2295	2295		37.159	0	1	213640			10650	17930	7268	7284	12137	12137					0.00785211863387758
EGGYGRIYNA	10	Unmodified	_EGGYGRIYNA_					0	0	0			REV__nc|ENSG00000110786|P54829-2|PTPN5	REV__nc|ENSG00000110786|P54829-2|PTPN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.322021484375	2	550.261988	1098.50942	-0.2608	-0.00014351	0.31253	0.00017197	0.051722	2.8461E-05	550.2618644042878	47.245	0.49261	47.051	46.779	47.272	-0.19387					27	12	3	0	0	0	0.03519	1	4597	4597		39.253	0	1	197910	+		10651	21875	7269	7285	12138	12138					-0.035892060845753804
EGHIHKCSCSY	11	Unmodified	_EGHIHKCSCSY_					0	0	0		ENSG00000152763|ENST00000371026|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.8463439941406	3	421.846352	1262.51723	-0.097444	-4.1106E-05	-0.49825	-0.00021018	-0.59569	-0.00025129	421.84648922159715	33.295	2.6754	33.095	32.771	35.447	-0.20019					172	67	7	0	0	0	1.0059	1	2339	2339		35.496	5.9449	1	17150000			10652	6296	7270	7286	12139	12139					-0.1035313815095833
EGHNVYVQ	8	Unmodified	_EGHNVYVQ_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.2795104980469	2	473.224874	944.435195	-0.17945	-8.4918E-05	0.75356	0.0003566	0.57412	0.00027169	473.2251526113332	31.391	0.62537	31.205	31.023	31.649	-0.18503					20	15	2	0	0	0	0.027866	1	2081	2081		18.324	3.4595	1	173350	+		10653	36535	7271	7287	12140	12140					-0.03924549176088021
EGHPRWRPTQ	10	Unmodified	_EGHPRWRPTQ_					0	0	0			REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8466491699219	3	421.882894	1262.62685	-0.10388	-4.3827E-05	4.1902	0.0017678	4.0863	0.0017239	421.8860970910393	33.372	0.27185	33.172	32.937	33.209	-0.20019					10	6	2	0	0	0	0.03519	1	2373	2373		46.457	12.535	1	50156	+		10654	32816	7272	7288	12141	12141					0.006043715748774048
EGHQHGESEFL	11	Unmodified	_EGHQHGESEFL_					0	0	0			REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	REV__ENST00000430298.6_1_19:12221166-12222535:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.73455810546875	3	423.854669	1268.54218	-0.72461	-0.00030713	-3.1085	-0.0013176	-3.8331	-0.0016247	423.8535745066423	37.535	0.42287	37.472	37.232	37.655	-0.063385					17	11	2	0	0	0	0.024723	1	3023	3023		22.562	6.6409	1	133690	+		10655	32351	7273	7289	12142	12142					-0.0813504375237244
EGHRDTCDEDS	11	Unmodified	_EGHRDTCDEDS_					0	0	0		nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8467102050781	3	421.822929	1262.44696	-0.12054	-5.0845E-05	-3.2317	-0.0013632	-3.3522	-0.001414	421.8224064174426	33.233	0.27907	33.002	32.835	33.114	-0.23107					10	6	2	0	0	0	0.024727	1	2362	2362		11.932	0	1	41544			10656	18214	7274	7290	12143	12143					-0.17376765005747075
EGHRGLVI	8	Unmodified	_EGHRGLVI_					0	0	0		ENST00000530962.5_1_11:111412247-111414725:+|nuORF	ENST00000530962.5_1_11:111412247-111414725:+|nuORF	ENST00000530962.5_1_11:111412247-111414725:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7144470214844	2	440.753601	879.49265	-0.065084	-2.8686E-05	0.66556	0.00029335	0.60047	0.00026466	440.7538156958665	31.034	0.50195	31.103	30.786	31.288	0.068962					20	11	2	0	0	0	0.027866	1	1976	1976		31.955	13.63	1	103210			10657	16249	7275	7291	12144	12144					0.048083378201340565
EGHRKDKHI	9	Unmodified	_EGHRKDKHI_					0	0	0		ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2550048828125	2	560.304521	1118.59449	1.4935	0.0008368	-2.1651	-0.0012131	-0.67164	-0.00037632	560.30275363595	63.888	0.32435	63.888	63.666	63.99	0					14	8	2	0	0	0	0.024374	1	7508	7508		58.782	21.623	1	397360			10658	15350	7276	7292	12145	12145					0.039935841718943266
EGHRKDKHI	9	Unmodified	_EGHRKDKHI_					0	0	0		ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.2546997070312	2	560.304521	1118.59449	-0.21073	-0.00011808	-0.23331	-0.00013072	-0.44404	-0.0002488	560.3040230232954	64.169	0.29226	63.918	63.695	63.987	-0.25141					12	7	2	0	0	0	0.024374	1	7513	7513		49.442	16.629	1	447720			10659	15350	7276	7292	12146	12146					0.039935841718943266
EGHRKDKHI	9	Unmodified	_EGHRKDKHI_					0	0	0		ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.304521	1118.59449	-0.37403	-0.00020957	-3.6908	-0.002068	-4.0649	-0.0022776	560.3002628604559	64.249	0.75685	64.021	63.74	64.497	-0.22773	0.068837	-0.0022126	NaN	58.782	41	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514100			10660	15350	7276	7292							0.039935841718943266
EGHRKDKHI	9	Unmodified	_EGHRKDKHI_					0	0	0		ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	ENST00000486708.1_1_22:31924838-31946432:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.304521	1118.59449	-0.44651	-0.00025018	-2.8944	-0.0016218	-3.3409	-0.0018719	560.3032467069916	64.237	0.31966	63.982	63.795	64.115	-0.25563	0.029637	-0.0013201	NaN	58.782	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541040			10661	15350	7276	7292							0.039935841718943266
EGHSKTIL	8	Unmodified	_EGHSKTIL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.74578857421875	2	442.745442	883.476331	-0.26791	-0.00011862	0.55218	0.00024447	0.28427	0.00012586	442.74566784624784	24.413	1.2094	24.198	23.599	24.809	-0.21511					64	27	4	0	0	0	0.30053	3	1068	1057;1068;1082		111.65	34.802	1	1907400			10662	2536	7277	7293	12147;12148;12149	12148					0.02993211863383749
EGHSKTIL	8	Unmodified	_EGHSKTIL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.7458190917969	2	442.745442	883.476331	-0.21612	-9.5685E-05	0.35163	0.00015568	0.13552	5.9999E-05	442.7454338414886	24.204	0.77222	24.03	23.524	24.296	-0.17484					39	17	4	0	0	0	0.27053	1	1037	1037		124.59	32.404	1	1854100			10663	2536	7277	7293	12150	12150					0.02993211863383749
EGHSKTIL	8	Unmodified	_EGHSKTIL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.74591064453125	2	442.745442	883.476331	2.3031	0.0010197	-2.3358	-0.0010342	-0.032673	-1.4466E-05	442.7442370041567	24.26	0.74692	24.079	23.582	24.329	-0.18089					40	16	4	0	0	0	0.27053	2	1020	1008;1020		124.59	33.818	1	1733600			10664	2536	7277	7293	12151;12152	12152					0.02993211863383749
EGHVDKQTW	9	Unmodified	_EGHVDKQTW_					0	0	0			REV__ENSG00000047578|ENST00000261588|KATNIP	REV__ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.322021484375	2	550.261988	1098.50942	-0.19203	-0.00010567	0.2386	0.00013129	0.046576	2.5629E-05	550.7644371642749	47.127	0.44633	47.031	46.754	47.2	-0.096649					32	11	4	0	0	0	0.024261	1	4580	4580		54.776	0	1	324210	+		10665	20127	7278	7294	12153	12153					-0.035892060845753804
EGHVPRKP	8	Unmodified	_EGHVPRKP_					0	0	0		ENST00000519685.5_1_8:22873179-22874852:+|nuORF	ENST00000519685.5_1_8:22873179-22874852:+|nuORF	ENST00000519685.5_1_8:22873179-22874852:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7740173339844	2	460.259051	918.503549	0.65619	0.00030202	-0.08523	-3.9228E-05	0.57096	0.00026279	460.25863779983604	24.48	0.77255	24.558	23.912	24.685	0.078344					19	16	2	0	0	0	0.027866	1	967	967		38.806	0	1	37616			10666	15959	7279	7295	12154	12154					0.041037401944208796
EGIEISRPE	9	Unmodified	_EGIEISRPE_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2902221679688	2	515.264196	1028.51384	-0.33184	-0.00017099	3.5984	0.0018541	3.2666	0.0016831	515.2666290596482	70.28	0.45514	70.013	69.704	70.159	-0.26725					20	10	3	0	0	0	0.023454	1	8189	8189		62.107	1.9892	1	144720			10667	6624	7280	7296	12155	12155					0.0007225833833217621
EGIKPRKRKT	10	Unmodified	_EGIKPRKRKT_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.8880920410156	3	404.922689	1211.74624	0.18506	7.4935E-05	0.64015	0.00025921	0.82521	0.00033415	404.9226941988311	22.578	0.41191	22.392	22.142	22.554	-0.18539					15	8	3	0	0	0	0.03519	1	816	816		15.921	2.9632	1	91407			10668	6576	7281	7297	12156	12156					0.14883565199579607
EGILFYIT	8	Unmodified	_EGILFYIT_					0	0	0		ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77423095703125	2	478.260394	954.506234	0.60656	0.00029009	-4.3507	-0.0020808	-3.7441	-0.0017907	478.258247978898	69.144	0.5723	68.851	68.556	69.129	-0.29273					23	14	2	0	0	0	0.027866	1	8311	8311		18.324	0	1	311590			10669	6574	7282	7298	12157	12157					0.02716150808691964
EGILNVDPL	9	Unmodified	_EGILNVDPL_					0	0	0			REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2661437988281	2	485.266207	968.517862	-0.071949	-3.4914E-05	-0.13936	-6.7627E-05	-0.21131	-0.00010254	485.2660903477195	67.889	1.1444	67.908	67.466	68.61	0.018921					93	29	4	0	0	0	0.42604	1	8005	8005		64.207	0.901	1	14393000	+		10670	26236	7283	7299	12158	12158					0.032343478320512986
EGIQYKPAN	9	Unmodified	_EGIQYKPAN_					0	0	0			REV__ENSG00000174013|ENST00000311630|FBXO45	REV__ENSG00000174013|ENST00000311630|FBXO45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.27520751953125	2	510.261456	1018.50836	-0.31063	-0.0001585	-0.081062	-4.1363E-05	-0.39169	-0.00019986	510.2613004926536	70.333	0.45464	70.345	70.272	70.727	0.012413					15	10	2	0	0	0	0.024344	1	8465	8465		45.972	9.6546	1	683000	+		10671	26828	7284	7300	12159	12159					-0.00015420453485148755
EGIREREKLRR	11	Unmodified	_EGIREREKLRR_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.28387451171875	3	481.283057	1440.82734	0.51144	0.00024615	0.38343	0.00018454	0.89487	0.00043069	481.2833412925222	100.3	0.49316	100.3	100.04	100.53	0					22	11	3	0	0	0	1.0764	1	12851	12851		17.833	1.3033	1	189720	+		10672	28101	7285	7301	12160	12160					0.12456221171669313
EGIREREKLRR	11	Unmodified	_EGIREREKLRR_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	481.283057	1440.82734	0.51144	0.00024615	0.38343	0.00018454	0.89487	0.00043069	481.2833412925222	100.3	0.49316	100.3	100.04	100.53	0	-0.02869	-0.00052288	NaN	17.833	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189720	+		10673	28101	7285	7301							0.12456221171669313
EGIREREKLRR	11	Unmodified	_EGIREREKLRR_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	481.283057	1440.82734	0.018177	8.7484E-06	1.2441	0.00059877	1.2623	0.00060752	481.283868037411	100.27	0.48414	100.28	100.1	100.58	0.010117	-0.051306	0.00071981	NaN	17.833	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229520	+		10674	28101	7285	7301							0.12456221171669313
EGIREREKLRR	11	Unmodified	_EGIREREKLRR_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	481.283057	1440.82734	0.19103	9.194E-05	0.96699	0.0004654	1.158	0.00055734	481.28364504424263	100.34	0.50031	100.34	100.12	100.62	-0.0050812	0.010899	0.00031969	NaN	17.833	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262510	+		10675	28101	7285	7301							0.12456221171669313
EGIREREKLRR	11	Unmodified	_EGIREREKLRR_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	481.283057	1440.82734	0.52476	0.00025256	0.53713	0.00025851	1.0619	0.00051107	481.28342662610606	100.4	0.45245	100.28	100.07	100.52	-0.12504	-0.050241	-0.00030097	NaN	17.833	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165060	+		10676	28101	7285	7301							0.12456221171669313
EGIREREKLRR	11	Unmodified	_EGIREREKLRR_					0	0	0			REV__ENSG00000189134|ENST00000343684|NKAPL	REV__ENSG00000189134|ENST00000343684|NKAPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	481.283057	1440.82734	0.3126	0.00015045	1.5919	0.00076614	1.9045	0.00091659	481.28423499139296	100.58	0.47612	100.41	100.16	100.63	-0.17088	0.081806	0.0012219	NaN	17.833	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163650	+		10677	28101	7285	7301							0.12456221171669313
EGIRHLLSL	9	Unmodified	_EGIRHLLSL_					0	0	0			REV__ENST00000559593.5_1_14:24584570-24584755:+|nuORF	REV__ENST00000559593.5_1_14:24584570-24584755:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.279296875	2	519.308741	1036.60293	-0.041651	-2.163E-05	2.8261	0.0014676	2.7844	0.001446	519.3106153119286	77.146	0.50064	77.146	76.882	77.382	0					18	11	3	0	0	0	0.024477	1	9546	9546		35.618	10.044	1	319870	+		10678	35121	7286	7302	12161	12161					0.08609138088513646
EGIVECKLL	9	Unmodified	_EGIVECKLL_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2763671875	2	502.27826	1002.54197	-0.80193	-0.00040279	-2.7627	-0.0013877	-3.5647	-0.0017905	502.2764733449899	64.991	1.1991	64.736	64.191	65.39	-0.25563					80	29	4	0	0	0	0.59099	1	7392	7392		53.351	5.6941	1	1826700	+		10679	27928	7287	7303	12162	12162					0.040798649940711584
EGKALRCLKP	10	Unmodified	_EGKALRCLKP_					0	0	0			REV__nc|ENSG00000215859|A8MUH7|PDZK1P1	REV__nc|ENSG00000215859|A8MUH7|PDZK1P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.7382202148438	2	557.823701	1113.63285	-0.95647	-0.00053354	-2.0012	-0.0011163	-2.9576	-0.0016498	557.8225978385732	60.874	0.78262	60.946	60.384	61.167	0.071125					38	20	3	0	0	0	0.03519	1	6917	6917		40.778	16.259	1	284230	+		10680	26895	7288	7304	12163	12163					0.08057753762204811
EGKEVLLVV	9	Unmodified	_EGKEVLLVV_					0	0	0		nc|ENSG00000007306|Q14002-2|CEACAM7;ENSG00000007306|ENST00000401731|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.77923583984375	2	493.30005	984.585547	-0.47748	-0.00023554	-2.5769	-0.0012712	-3.0544	-0.0015067	493.29841815678014	57.714	0.31418	57.481	57.349	57.664	-0.23363					15	7	3	0	0	0	0.024292	1	6293	6293		25.574	0	1	573280			10681	814	7289	7305	12164	12164					0.09263797762855575
EGKFCGFLFSD	11	Unmodified	_EGKFCGFLFSD_					0	0	0		MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant;ENSG00000183695|ENST00000329773|MRGPRX2	MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant	MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.1900634765625	3	417.190113	1248.54851	0.50555	0.00021091	-0.12222	-5.099E-05	0.38333	0.00015992	417.1899796781786	50.933	0.98621	50.821	50.525	51.511	-0.11163					71	25	4	0	0	0	0.95317	1	5209	5209		47.228	15.593	1	1957500			10682	9262	7290	7306	12165	12165					-0.06582241845239878
EGKFCGFLFSD	11	Unmodified	_EGKFCGFLFSD_					0	0	0		MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant;ENSG00000183695|ENST00000329773|MRGPRX2	MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant	MRGPRX2|p.S269Ifs*3|1|0.17|ENSG00000183695|chr11:19055598-19055599|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	417.190113	1248.54851	0.94558	0.00039449	-0.62559	-0.00026099	0.31999	0.0001335	417.18973841445427	50.959	0.76343	50.779	50.498	51.261	-0.18071	-0.069669	-0.00069085	NaN	47.228	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1888500			10683	9262	7290	7306							-0.06582241845239878
EGKIRFMGP	9	Unmodified	_EGKIRFMGP_					0	0	0			REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7698974609375	2	517.776219	1033.53789	-0.34753	-0.00017995	-3.0294	-0.0015685	-3.3769	-0.0017485	517.7743872556274	66.686	0.3308	66.441	66.166	66.496	-0.24517					15	9	2	0	0	0	0.024523	1	7626	7626		29.15	18.884	1	991540	+		10684	19985	7291	7307	12166	12166					0.022458202910002
EGKKKIVNK	9	Unmodified	_EGKKKIVNK_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7894287109375	2	522.332216	1042.64988	0.90107	0.00047066	2.507	0.0013095	3.4081	0.0017801	522.3334730542209	84.556	0.83821	84.397	84.02	84.858	-0.15869					31	19	3	0	0	0	0.024541	1	10192	10192		37.812	9.9293	1	106660	+		10685	22403	7292	7308	12167	12167					0.1302599763962462
EGKKKRKIKK	10	Unmodified	_EGKKKRKIKK_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.8985595703125	3	414.950468	1241.82957	-0.61642	-0.00025578	-4.3775	-0.0018164	-4.9939	-0.0020722	414.9497566484361	25.176	0.12127	25.141	25.079	25.201	-0.034395					4	2	2	0	0	0	0.03519	1	1159	1159		33.039	0	1	28258	+		10686	20583	7293	7309	12168	12168					0.21833301647416192
EGKMTLKKI	9	Unmodified	_EGKMTLKKI_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2909545898438	2	524.315177	1046.6158	0.2428	0.0001273	4.413	0.0023138	4.6558	0.0024411	524.3170427319997	71.761	0.35719	71.499	71.322	71.679	-0.26199					14	8	2	0	0	0	0.023454	1	8423	8423		52.937	0	1	269460			10687	6234	7294	7310	12169	12169					0.09435833156385343
EGKNLASLL	9	Unmodified	_EGKNLASLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.7693176269531	2	472.7742	943.533846	-0.29705	-0.00014044	1.2699	0.00060036	0.97281	0.00045992	472.77464763407653	29.83	0.4278	29.68	29.584	30.012	-0.14952					13	9	2	0	0	0	0.024261	1	1841	1841		54.776	15.97	1	46712			10688	3505	7295	7311	12170	12170					0.059820540689429436
EGKNQEVI	8	Unmodified	_EGKNQEVI_					0	0	0		ENSG00000160282|ENST00000397746|FTCD;nc|ENSG00000160282|O95954-2|FTCD;nc|ENSG00000160282|O95954-4|FTCD;ENST00000498355.6_1_21:47571812-47575443:-|nuORF;nc|ENSG00000160282|O95954-3|FTCD	ENSG00000160282|ENST00000397746|FTCD	ENSG00000160282|ENST00000397746|FTCD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.76397705078125	2	458.740357	915.46616	0.29551	0.00013556	-3.0813	-0.0014135	-2.7857	-0.0012779	458.738573764255	23.619	0.41458	23.418	23.153	23.567	-0.20193					14	9	2	0	0	0	0.027866	1	976	976		92.191	7.2751	1	89341			10689	6800	7296	7312	12171	12171					0.005046041381433497
EGKQVALSL	9	Unmodified	_EGKQVALSL_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.76947021484375	2	472.7742	943.533846	-0.2066	-9.7676E-05	0.48928	0.00023132	0.28268	0.00013364	472.7743723120783	30.003	0.33619	29.759	29.568	29.905	-0.24415					13	7	2	0	0	0	0.024025	1	1876	1876		71.877	11.759	1	94735	+		10690	26206	7297	7313	12172	12172					0.059820540689429436
EGKQVALSL	9	Unmodified	_EGKQVALSL_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.76922607421875	2	472.7742	943.533846	-0.69456	-0.00032837	3.5747	0.00169	2.8801	0.0013617	472.77487816619674	29.866	0.51286	29.693	29.533	30.046	-0.17258					18	11	3	0	0	0	0.024209	1	1852	1852		66.429	11.653	1	62619	+		10691	26206	7297	7313	12173	12173					0.059820540689429436
EGKRKVESL	9	Unmodified	_EGKRKVESL_					0	0	0		ENSG00000106245|ENST00000222969|BUD31;ENST00000471813.1_1_7:99008715-99013888:+|nuORF;nc|ENSG00000106245|P41223-2|BUD31	ENSG00000106245|ENST00000222969|BUD31	ENSG00000106245|ENST00000222969|BUD31	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3029174804688	2	523.303655	1044.59276	-0.17508	-9.1622E-05	0.085888	4.4946E-05	-0.089195	-4.6676E-05	523.3035148235405	19.958	0.47985	19.79	19.522	20.002	-0.16747					24	9	4	0	0	0	0.34489	1	487	487		69.628	16.276	1	405220			10692	2769	7298	7314	12174	12174					0.07224530363282611
EGKRQIPL	8	Unmodified	_EGKRQIPL_					0	0	0		ENSG00000138356|ENST00000374700|AOX1;AOX1|p.G450Wfs*8|1|0.35|ENSG00000138356|chr2:200612686-200612687|-/T|frameshift_variant	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2923583984375	2	470.782359	939.550165	0.3907	0.00018393	-1.0026	-0.00047202	-0.61193	-0.00028809	470.78181906352467	50.094	0.9001	49.943	49.558	50.458	-0.1512					36	25	3	0	0	0	0.027866	1	5227	5227		50.025	0	1	1213600			10693	5230	7299	7315	12175	12175					0.07797180025715988
EGKVQAKNW	9	Unmodified	_EGKVQAKNW_					0	0	0		ENST00000337852.10_1_X:48566837-48567230:+|nuORF	ENST00000337852.10_1_X:48566837-48567230:+|nuORF	ENST00000337852.10_1_X:48566837-48567230:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	530.282723	1058.55089	-0.9302	-0.00049327	0.3213	0.00017038	-0.6089	-0.00032289	530.2829447798715	39.967	0.82627	39.99	39.561	40.387	0.023006					88	20	5	0	0	0	0.29104	1	3424	3424		76.847	2.5916	1	31256000			10694	12428	7300	7316	12176	12176					0.023959746747550525
EGKVRSTPM	9	Oxidation (M)	_EGKVRSTPM(Oxidation (M))_		EGKVRSTPM(1)		EGKVRSTPM(51)	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7624816894531	2	510.760766	1019.50698	1.0439	0.0005332	-1.1827	-0.00060407	-0.13876	-7.0872E-05	510.7599786362728	17.834	1.1883	17.68	17.408	18.596	-0.15403					43	23	3	0	0	0	0.6238	1	230	230		51.193	15.574	1	147340			10695	6928	7301	7317	12177	12177		285			-0.001993778138739799
EGLAQGVRF	9	Unmodified	_EGLAQGVRF_					0	0	0			REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7772521972656	2	488.764166	975.513779	-0.67293	-0.0003289	1.0135	0.00049537	0.34059	0.00016647	488.7644890731146	25.114	0.68539	25.114	24.563	25.248	0					24	15	2	0	0	0	0.024457	1	1086	1086		21.96	0	1	173790	+		10696	19857	7302	7318	12178	12178					0.02504303129001073
EGLAQGVRF	9	Unmodified	_EGLAQGVRF_					0	0	0			REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	488.764166	975.513779	-1.0761	-0.00052594	0.93506	0.00045702	-0.14099	-6.8913E-05	488.7645525745024	25.081	0.6208	25.047	24.771	25.392	-0.034397	-0.024386	0.00035242	NaN	21.96	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174920	+		10697	19857	7302	7318							0.02504303129001073
EGLAQGVRF	9	Unmodified	_EGLAQGVRF_					0	0	0			REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.764166	975.513779	-0.090954	-4.4455E-05	0.14194	6.9375E-05	0.050987	2.492E-05	488.76409193053905	24.974	0.42977	25.053	24.823	25.253	0.078344	-0.018613	-0.00042288	NaN	21.96	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142930	+		10698	19857	7302	7318							0.02504303129001073
EGLEALSTVA	10	Unmodified	_EGLEALSTVA_					0	0	0			REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7754821777344	2	495.261122	988.507691	-0.38946	-0.00019289	4.4091	0.0021837	4.0197	0.0019908	495.26254435623144	21.409	0.62355	21.319	21.059	21.683	-0.090094					22	12	3	0	0	0	0.03519	1	633	633		44.117	8.4985	1	24713	+		10699	37532	7303	7319	12179	12179					0.012977401068042127
EGLFVHPSQL	10	Unmodified	_EGLFVHPSQL_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.3194580078125	2	563.798206	1125.58186	-0.58219	-0.00032824	3.6795	0.0020745	3.0973	0.0017463	564.3014870748682	95.903	0.29698	95.903	95.778	96.075	0					8	6	2	0	0	0	0.03519	1	12203	12203		52.937	8.8199	1	35664	+		10700	26520	7304	7320	12180	12180					0.024091279889944417
EGLFVWLW	8	Unmodified	_EGLFVWLW_					0	0	0		ENST00000392161.3_1_19:36884264-36884300:-|nuORF	ENST00000392161.3_1_19:36884264-36884300:-|nuORF	ENST00000392161.3_1_19:36884264-36884300:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2506103515625	2	525.276378	1048.5382	-0.88979	-0.00046738	-2.4231	-0.0012728	-3.3129	-0.0017402	525.2746842519579	62.011	0.34903	61.833	61.654	62.003	-0.17781					13	8	2	0	0	0	0.027866	1	6955	6955		21.702	6.8375	1	183020			10701	13408	7305	7321	12181	12181					0.015875632825100183
EGLGARRVQ	9	Unmodified	_EGLGARRVQ_					0	0	0			REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7976989746094	2	493.280515	984.546476	0.21329	0.00010521	3.8797	0.0019138	4.093	0.002019	493.28220906104104	61.555	1.005	61.328	60.974	61.979	-0.22663					39	26	2	0	0	0	0.024427	1	7056	7056		26.693	1.2427	1	286870	+		10702	35425	7306	7322	12182	12182					0.05358510251858206
EGLGSQFPVEE	11	Unmodified	_EGLGSQFPVEE_					0	0	0		ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.2811889648438	2	596.280043	1190.54553	-0.16986	-0.00010128	1.0416	0.00062106	0.8717	0.00051977	596.2806716426511	59.248	0.60373	59.067	58.831	59.435	-0.18134					25	14	2	0	0	0	0.90172	1	6552	6552		51.528	1.9917	1	3219900			10703	11706	7307	7323	12183	12183					-0.04211793698368638
EGLGSQFPVEE	11	Unmodified	_EGLGSQFPVEE_					0	0	0		ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.2809448242188	2	596.280043	1190.54553	0.081399	4.8536E-05	0.52227	0.00031142	0.60367	0.00035996	596.2802682906411	59.395	0.6092	59.147	58.847	59.457	-0.24842					35	14	3	0	0	0	0.70536	1	6554	6554		63.426	10.338	1	2924100			10704	11706	7307	7323	12184	12184					-0.04211793698368638
EGLGSQFPVEE	11	Unmodified	_EGLGSQFPVEE_					0	0	0		ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	596.280043	1190.54553	-0.54486	-0.00032489	4.6337	0.002763	4.0888	0.0024381	596.2826520808156	59.108	0.36177	59.108	58.895	59.257	0	-0.025824	0.0041919	NaN	63.426	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295950			10705	11706	7307	7323							-0.04211793698368638
EGLGSQFPVEE	11	Unmodified	_EGLGSQFPVEE_					0	0	0		ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	596.280043	1190.54553	0.81299	0.00048477	4.1246	0.0024594	4.9376	0.0029442	596.2818881314163	59.353	0.39541	59.153	58.923	59.318	-0.20016	0.019696	0.0035847	NaN	63.426	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404010			10706	11706	7307	7323							-0.04211793698368638
EGLGSQFPVEE	11	Unmodified	_EGLGSQFPVEE_					0	0	0		ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	ENST00000279022.6_1_20:35177725-35177818:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	596.280043	1190.54553	-0.049363	-2.9434E-05	5.2114	0.0031074	5.162	0.003078	596.2836578703985	59.078	0.42783	59.163	58.813	59.241	0.085686	0.030018	0.0048808	NaN	63.426	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250140			10707	11706	7307	7323							-0.04211793698368638
EGLKLYSE	8	Unmodified	_EGLKLYSE_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1;ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	469.74566650390625	2	469.745108	937.475663	0.33837	0.00015895	1.1065	0.00051976	1.4448	0.00067871	469.74544548532793	19.668	0.72655	19.507	19.282	20.009	-0.16079					29	14	3	0	0	0	1.0106	1	464	464		35.618	1.4457	1	312790			10708	8135	7308	7324	12185	12185					0.004423724236630733
EGLLAWVISL	10	Unmodified	_EGLLAWVISL_					0	0	0		ENST00000520254.5_1_8:130892669-130951872:-|nuORF	ENST00000520254.5_1_8:130892669-130951872:-|nuORF	ENST00000520254.5_1_8:130892669-130951872:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2801513671875	2	550.82115	1099.62775	0.15808	8.7072E-05	-4.4749	-0.0024649	-4.3169	-0.0023778	550.8186152977313	72.232	0.75198	72.232	71.904	72.656	0					44	18	3	0	0	0	0.03519	1	8842	8842		18.262	0	1	706060			10709	15974	7309	7325	12186	12186					0.08191773171233763
EGLLIVKVE	9	Unmodified	_EGLLIVKVE_					0	0	0		ENST00000574928.5_1_16:3185143-3187740:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3068542480469	2	500.307875	998.601197	-0.38352	-0.00019188	-2.5483	-0.0012749	-2.9318	-0.0014668	500.30646139978785	31.094	1.2358	31.106	30.627	31.863	0.011797					62	29	4	0	0	0	0.72494	1	2043	2043		44.377	5.1244	1	2519200			10710	17090	7310	7326	12187	12187					0.10184084279899253
EGLLIVKVE	9	Unmodified	_EGLLIVKVE_					0	0	0		ENST00000574928.5_1_16:3185143-3187740:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.30682373046875	2	500.307875	998.601197	-0.26303	-0.0001316	-2.8465	-0.0014241	-3.1095	-0.0015557	500.3063562986827	30.862	0.98518	30.936	30.626	31.612	0.074314					50	23	4	0	0	0	0.82115	1	1957	1957		37.812	7.3079	1	2531600			10711	17090	7310	7326	12188	12188					0.10184084279899253
EGLLLSHR	8	Unmodified	_EGLLLSHR_					0	0	0		ENSG00000171119|ENST00000303212|NRTN	ENSG00000171119|ENST00000303212|NRTN	ENSG00000171119|ENST00000303212|NRTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.750732421875	2	462.766709	923.518865	0.15033	6.9569E-05	4.4841	0.0020751	4.6345	0.0021447	462.7684559740197	42.398	1.5394	42.398	41.793	43.332	0					86	43	3	0	0	0	0.027866	1	3902	3902		20.947	0	1	334060			10712	8115	7311	7327	12189	12189					0.054046069916125816
EGLLSAGLL	9	Unmodified	_EGLLSAGLL_					0	0	0			REV__ENST00000548550.1_1_12:57921370-57921460:+|nuORF	REV__ENST00000548550.1_1_12:57921370-57921460:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2734375	2	436.758018	871.501483	0.086224	3.7659E-05	2.3531	0.0010277	2.4393	0.0010654	436.75894327035	42.455	0.34091	42.225	42.139	42.48	-0.23029					11	8	2	0	0	0	0.024183	1	3835	3835		40.573	0	1	108620	+		10713	34879	7312	7328	12190	12190					0.060592666659431416
EGLLWDLCTCL	11	Unmodified	_EGLLWDLCTCL_					0	0	0			REV__ENST00000526004.1_1_14:25101006-25102204:-|nuORF	REV__ENST00000526004.1_1_14:25101006-25102204:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8465576171875	3	422.535003	1264.58318	-0.12899	-5.4504E-05	0.57607	0.00024341	0.44708	0.00018891	422.53521608332494	33.353	0.42668	33.153	32.977	33.404	-0.20019					18	10	2	0	0	0	0.024748	1	2385	2385		30.569	0	1	342890	+		10714	34427	7313	7329	12191	12191					-0.03852742028743705
EGLNQKLY	8	Unmodified	_EGLNQKLY_					0	0	0		ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	ENSG00000128203|ENST00000215906|ASPHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.75836181640625	2	482.758549	963.502546	0.40121	0.00019369	-0.37394	-0.00018052	0.027273	1.3166E-05	482.7581849268421	49.502	0.9394	49.322	48.961	49.901	-0.18071					49	24	3	0	0	0	0.95679	1	4969	4969		44.117	8.4985	1	2032400			10715	4279	7314	7330	12192	12192					0.019334810348595965
EGLPHVLL	8	Unmodified	_EGLPHVLL_					0	0	0		nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF	nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.2100830078125	2	439.260728	876.506903	0.73677	0.00032363	1.2047	0.00052918	1.9415	0.00085282	439.2615482998068	50.504	0.70298	50.323	50.094	50.797	-0.18071					26	18	2	0	0	0	0.027866	1	5137	5137		21.702	16.145	1	345290			10716	7206	7315	7331	12193	12193					0.06370990248422004
EGLRKRLS	8	Unmodified	_EGLRKRLS_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7508239746094	2	479.793258	957.571963	-0.30088	-0.00014436	-0.56299	-0.00027012	-0.86387	-0.00041448	479.7930502631502	32.463	0.68027	32.474	32.063	32.743	0.011799					27	17	2	0	0	0	0.027866	1	2219	2219		45.952	8.7928	1	614140			10717	7690	7316	7332	12194	12194					0.0914798477426757
EGLRVLTQL	9	Unmodified	_EGLRVLTQL_					0	0	0		ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8092041015625	2	514.808574	1027.60259	-0.050579	-2.6039E-05	-0.33386	-0.00017187	-0.38444	-0.00019791	514.8083690975062	67.769	1.379	67.481	66.992	68.371	-0.28834					71	34	5	0	0	0	0.33603	1	8091	8091		70.816	7.5099	1	8111000			10718	9558	7317	7333	12195	12195					0.0898971836866167
EGLRVMGEV	9	Unmodified	_EGLRVMGEV_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7744445800781	2	495.257859	988.501166	-0.089287	-4.422E-05	-3.563	-0.0017646	-3.6523	-0.0018088	495.25600883495656	49.597	0.52099	49.446	49.113	49.634	-0.1512					18	13	2	0	0	0	0.024261	1	5134	5134		54.776	19.158	1	172730			10719	4531	7318	7334	12196	12196					0.006455236744614012
EGLRVMGEV	9	Unmodified	_EGLRVMGEV_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.257859	988.501166	-1.365	-0.00067604	-1.0701	-0.00052996	-2.4351	-0.001206	495.25663428999417	49.147	0.44328	49.221	49.06	49.503	0.074192	-0.11018	0.0026565	NaN	54.776	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177720			10720	4531	7318	7334							0.006455236744614012
EGLRVMGEV	9	Unmodified	_EGLRVMGEV_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.257859	988.501166	-0.51437	-0.00025475	-3.1369	-0.0015536	-3.6513	-0.0018083	495.25590155364284	49.421	0.42418	49.32	48.992	49.416	-0.1008	-0.011298	0.00060921	NaN	54.776	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125680			10721	4531	7318	7334							0.006455236744614012
EGLRVMGEV	9	Unmodified	_EGLRVMGEV_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.257859	988.501166	0.040934	2.0273E-05	-4.047	-0.0020043	-4.0061	-0.001984	495.255753592353	49.631	0.34608	49.351	49.201	49.547	-0.27977	0.020039	-0.00029223	NaN	54.776	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132100			10722	4531	7318	7334							0.006455236744614012
EGLTLTLSL	9	Unmodified	_EGLTLTLSL_					0	0	0			REV__nc|ENSG00000141934|O43688-3|PLPP2	REV__nc|ENSG00000141934|O43688-3|PLPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7779235839844	2	473.776408	945.538263	0.27668	0.00013108	2.9536	0.0013994	3.2303	0.0015305	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.43973	1	1050	1050		63.306	0	1	5959600	+		10723	24126	7319	7335	12197	12197					0.06331518491856514
EGLTVALILA	10	Unmodified	_EGLTVALILA_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3066101074219	2	500.307875	998.601197	-0.26303	-0.0001316	-2.8465	-0.0014241	-3.1095	-0.0015557	500.3063562986827	30.862	0.98518	30.936	30.626	31.612	0.074314					50	23	4	0	0	0	1.0781	1	1967	1967		35.618	2.1027	1	2531600	+		10724	28236	7320	7336	12198	12198					0.10184084279899253
EGLVDWIW	8	Unmodified	_EGLVDWIW_					0	0	0			REV__ENSG00000040487|ENST00000375153|SLC66A1	REV__ENSG00000040487|ENST00000375153|SLC66A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.28363037109375	2	509.255643	1016.49673	-0.020943	-1.0665E-05	0.54195	0.00027599	0.52101	0.00026533	509.7589302896199	70.026	0.25021	69.804	69.597	69.847	-0.22245					9	5	2	0	0	0	0.027866	1	8137	8137		57.811	4.8746	1	45219	+		10725	20090	7321	7337	12199	12199					-0.010856174768264282
EGLVLWIHI	9	Unmodified	_EGLVLWIHI_					0	0	0			REV__ENST00000330137.11_1_17:57188696-57188807:-|nuORF	REV__ENST00000330137.11_1_17:57188696-57188807:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7584838867188	2	540.316035	1078.61752	-1.4789	-0.00079909	-3.3564	-0.0018135	-4.8353	-0.0026126	540.3139694413989	47.65	0.97504	47.709	47.282	48.258	0.059097					61	28	3	0	0	0	0.024535	1	4668	4668		18.324	0	1	2679000	+		10726	30451	7322	7338	12200	12200					0.08135210236650892
EGLWLLNNL	9	Unmodified	_EGLWLLNNL_					0	0	0		ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6;ENST00000515265.2_1_5:140022188-140024328:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2955932617188	2	536.295299	1070.57605	-0.05882	-3.1545E-05	0.67707	0.00036311	0.61825	0.00033156	536.2956460201303	74.541	1.133	74.358	74.094	75.227	-0.18279					44	26	3	0	0	0	0.31037	1	8790	8790		74.255	5.7703	1	1131600			10727	3263	7323	7339	12201	12201					0.04358029477339187
EGLWVVLHL	9	Unmodified	_EGLWVVLHL_					0	0	0		ENST00000429744.2_1_1:52645740-52646091:+|nuORF	ENST00000429744.2_1_1:52645740-52646091:+|nuORF	ENST00000429744.2_1_1:52645740-52646091:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7741088867188	2	533.30821	1064.60187	-1.0684	-0.00056979	2.2006	0.0011736	1.1322	0.00060381	533.3086932668933	48.18	0.72964	47.904	47.457	48.187	-0.27598					43	19	3	0	0	0	0.024466	1	4731	4731		25.45	0	1	462530			10728	14154	7324	7340	12202	12202					0.07214923719629951
EGMHKNEAI	9	Unmodified	_EGMHKNEAI_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.295654296875	2	514.745116	1027.47568	-0.229	-0.00011788	0.3093	0.00015921	0.080305	4.1337E-05	515.2485217393321	73.634	0.96512	73.444	72.718	73.683	-0.19027					37	23	2	0	0	0	0.024344	1	8604	8604		23.523	0	1	156660			10729	6257	7325	7341	12203	12203					-0.03695950847986751
EGMLWEWSSMS	11	Unmodified	_EGMLWEWSSMS_					0	0	0			REV__chr6:113617423-113622885|488|25.57|0.0|21.29|-|1|TE_info:L2c,L2c_dup56548,L2,LINE,donor,+,113622885,113623090|LINC02541,None|4	REV__chr6:113617423-113622885|488|25.57|0.0|21.29|-|1|TE_info:L2c,L2c_dup56548,L2,LINE,donor,+,113622885,113623090|LINC02541,None|4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.25384521484375	3	448.186263	1341.53696	0.1871	8.3856E-05	-4.037	-0.0018093	-3.8499	-0.0017255	448.18463640192215	48.984	0.34639	48.984	48.83	49.176	0					14	9	2	0	0	0	0.024801	1	5053	5053		12.957	0	1	67050	+		10730	19452	7326	7342	12204	12204					-0.12014806930869781
EGMVEATAMT	10	Oxidation (M)	_EGM(Oxidation (M))VEATAMT_		EGM(1)VEATAMT		EGM(68)VEATAM(-68)T	0	0	1		ENSG00000184185|ENST00000583088|KCNJ12;ENSG00000260458|ENST00000567955|KCNJ18;ENSG00000123700|ENST00000243457|KCNJ2;ENSG00000168135|ENST00000303592|KCNJ4;ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000184185|ENST00000583088|KCNJ12;ENSG00000123700|ENST00000243457|KCNJ2;ENSG00000168135|ENST00000303592|KCNJ4;ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000184185|ENST00000583088|KCNJ12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2736206054688	2	528.222825	1054.4311	-0.64987	-0.00034328	0.86156	0.00045509	0.21169	0.00011182	528.2232756709354	92.032	0.19698	92.024	91.924	92.121	-0.0082932					7	4	2	0	0	0	0.03519	1	11625	11625		68.787	7.8149	2	335150			10731	9312;3997;7787;9126	7327	7343	12205	12205		157			-0.09394142776363879
EGNCYCYII	9	Unmodified	_EGNCYCYII_					0	0	0			REV__chr2:208360237-208428201|177|10.51|0.52|4.34|+|ENST00000617735|PTH2R,PTH2R	REV__chr2:208360237-208428201|177|10.51|0.52|4.34|+|ENST00000617735|PTH2R,PTH2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.8267211914062	2	539.222628	1076.4307	-0.43642	-0.00023533	2.7302	0.0014722	2.2938	0.0012368	539.2238450764273	55.106	0.24932	54.875	54.748	54.997	-0.23087					9	6	2	0	0	0	0.024292	1	5901	5901		40.778	4.3314	1	116510	+		10732	19415	7328	7344	12206	12206					-0.10445517705534257
EGNFDPGKKLL	11	Unmodified	_EGNFDPGKKLL_					0	0	0			REV__ENST00000320912.8_1_4:6643835-6643994:+|nuORF	REV__ENST00000320912.8_1_4:6643835-6643994:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2489013671875	3	406.555672	1216.64519	2.4209	0.00098424	3.765	0.0015307	6.1859	0.0025149	406.5571172066644	20.678	0.49193	20.747	20.464	20.956	0.068901					18	9	3	0	0	0	0.024723	1	551	551		35.178	5.6275	1	30611	+		10733	30339	7329	7345	12207	12207					0.045530687062409925
EGNFDPGKKLL	11	Unmodified	_EGNFDPGKKLL_					0	0	0			REV__ENST00000320912.8_1_4:6643835-6643994:+|nuORF	REV__ENST00000320912.8_1_4:6643835-6643994:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	406.555672	1216.64519	-0.040127	-1.6314E-05	6.0579	0.0024629	6.0177	0.0024465	406.5579674418164	20.555	0.47844	20.555	20.323	20.801	0	-0.10591	0.0016814	NaN	35.178	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37723	+		10734	30339	7329	7345							0.045530687062409925
EGNFDPGKKLL	11	Unmodified	_EGNFDPGKKLL_					0	0	0			REV__ENST00000320912.8_1_4:6643835-6643994:+|nuORF	REV__ENST00000320912.8_1_4:6643835-6643994:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	406.555672	1216.64519	0.084542	3.4371E-05	5.8277	0.0023693	5.9123	0.0024037	406.55795643742744	20.787	0.52222	20.682	20.473	20.995	-0.10477	0.020465	0.0014007	NaN	35.178	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61226	+		10735	30339	7329	7345							0.045530687062409925
EGNIMGNFE	9	Unmodified	_EGNIMGNFE_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.7140808105469	2	505.716024	1009.4175	-0.16385	-8.2861E-05	-3.1186	-0.0015771	-3.2825	-0.00166	505.7142495519542	31.492	4.3224	31.251	29.658	33.98	-0.24109					222	105	3	0	0	0	0.84115	1	2125	2125		36.447	0.82846	1	1926200	+		10736	27198	7330	7346	12208	12208					-0.0868363249325057
EGNKHITHV	9	Unmodified	_EGNKHITHV_					0	0	0		ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	ENSG00000040199|ENST00000568954|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7994384765625	2	517.772522	1033.53049	0.48634	0.00025181	-1.1542	-0.00059763	-0.6679	-0.00034582	517.772139114926	104.74	0.15798	104.57	104.47	104.63	-0.16484					5	3	2	0	0	0	0.024523	1	13025	13025		21.96	0	1	88666			10737	1065	7331	7347	12209	12209					0.015068040149344597
EGNVASILEV	10	Unmodified	_EGNVASILEV_					0	0	0		ENSG00000198870|ENST00000371957|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7733154296875	2	515.774396	1029.53424	-0.50352	-0.0002597	0.84199	0.00043428	0.33847	0.00017457	515.774779561194	67.016	0.5114	66.734	66.525	67.037	-0.28149					32	12	3	0	0	0	1.0816	1	7940	7940		35.152	0.97948	1	2814200			10738	10231	7332	7348	12210	12210					0.020654289981621332
EGNVWLSTL	9	Unmodified	_EGNVWLSTL_					0	0	0			REV__ENSG00000163661|ENST00000295927|PTX3	REV__ENSG00000163661|ENST00000295927|PTX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.28399658203125	2	509.763832	1017.51311	-0.17302	-8.8198E-05	1.4087	0.0007181	1.2357	0.00062991	509.7642957647993	70.289	0.41055	70.038	69.732	70.143	-0.25063					20	9	3	0	0	0	0.024477	1	8153	8153		35.618	19.145	1	220070	+		10739	25614	7333	7349	12211	12211					0.0050546368928507945
EGNYFAFY	8	Unmodified	_EGNYFAFY_					0	0	0			REV__ENSG00000122591|ENST00000432176|HYCC1	REV__ENSG00000122591|ENST00000432176|HYCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7143249511719	2	505.71635	1009.41815	-0.56138	-0.0002839	-3.8142	-0.0019289	-4.3756	-0.0022128	505.7144061319646	31.476	4.612	31.324	29.54	34.152	-0.15231					250	113	4	0	0	0	0.95679	1	2089	2089		44.117	8.4985	1	1760100	+		10740	22655	7334	7350	12212	12212					-0.0861846978190215
EGPALEPQPQ	10	Unmodified	_EGPALEPQPQ_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENST00000545453.5_2_13:73355107-73355970:-|nuORF	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2676391601562	2	533.264196	1064.51384	-0.23484	-0.00012523	-0.20637	-0.00011005	-0.44121	-0.00023528	533.263604988435	71.48	0.82912	71.491	71.013	71.842	0.010735					40	21	3	0	0	0	0.03519	1	8610	8610		62.107	12.666	1	204120			10741	1753	7335	7351	12213	12213					-0.015837416616705013
EGPCFGFLL	9	Unmodified	_EGPCFGFLL_					0	0	0		ENST00000359499.8_2_12:53232930-53233062:-|nuORF	ENST00000359499.8_2_12:53232930-53233062:-|nuORF	ENST00000359499.8_2_12:53232930-53233062:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2986145019531	2	491.738771	981.462989	-0.57026	-0.00028042	3.1357	0.0015419	2.5654	0.0012615	491.73983076493977	60.779	0.36539	60.525	60.294	60.66	-0.25373					13	8	2	0	0	0	0.024183	1	6746	6746		31.955	16.313	1	326330			10742	12739	7336	7352	12214	12214					-0.028483622402063702
EGPDAEIIGG	10	Unmodified	_EGPDAEIIGG_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7895202636719	2	479.229822	956.445091	-0.92794	-0.0004447	2.3544	0.0011283	1.4264	0.00068359	479.23077255292515	34.015	0.46619	33.84	33.662	34.128	-0.17557					18	11	2	0	0	0	0.03519	1	2442	2442		26.693	1.1189	1	231230			10743	5547	7337	7353	12215	12215					-0.03487405961368495
EGPDIDMDEP	10	Unmodified	_EGPDIDMDEP_					0	0	0			REV__MCF2L2|p.E779D|1|0.3|ENSG00000053524|chr3:183219889-183219889|C/G|missense_variant	REV__MCF2L2|p.E779D|1|0.3|ENSG00000053524|chr3:183219889-183219889|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2598266601562	2	559.221336	1116.42812	-0.023285	-1.3022E-05	-1.2439	-0.00069563	-1.2672	-0.00070865	559.2206837314408	79.451	0.46001	79.3	79.11	79.57	-0.15051					16	10	2	0	0	0	0.03519	1	9481	9481		14.137	0	1	73449	+		10744	36358	7338	7354	12216	12216					-0.12543694629493984
EGPDLTDIV	9	Unmodified	_EGPDLTDIV_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7588806152344	2	479.740022	957.465492	0.13149	6.308E-05	2.7614	0.0013248	2.8929	0.0013878	479.7413946858194	33.855	0.46369	33.855	33.626	34.09	0					19	11	2	0	0	0	0.024487	1	2471	2471		31.955	14.59	1	78266			10745	8804	7339	7355	12217	12217					-0.01494235301572644
EGPGTLCGFG	10	Carbamidomethyl (C)	_EGPGTLC(Carbamidomethyl (C))GFG_	EGPGTLC(1)GFG		EGPGTLC(51)GFG		0	1	0		ENST00000567020.6_2_16:2552545-2553103:+|nuORF	ENST00000567020.6_2_16:2552545-2553103:+|nuORF	ENST00000567020.6_2_16:2552545-2553103:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.7171936035156	2	497.718567	993.422581	-0.04779	-2.3786E-05	-2.9965	-0.0014914	-3.0443	-0.0015152	497.7168472322407	36.831	1.4517	36.638	35.898	37.35	-0.193					78	37	3	0	0	0	0.941	1	2881	2881		51.335	7.2187	1	3340800			10746	16951	7340	7356	12218	12218	224				-0.07439328630619002
EGPHFPIL	8	Unmodified	_EGPHFPIL_					0	0	0			REV__ENST00000409466.6_1_2:120059980-120060097:-|nuORF	REV__ENST00000409466.6_1_2:120059980-120060097:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2341003417969	2	455.245078	908.475603	0.27007	0.00012295	4.383	0.0019953	4.6531	0.0021183	455.2468723382368	50.981	0.63451	50.705	50.407	51.042	-0.27643					31	16	3	0	0	0	0.027866	1	5249	5249		37.028	26.844	1	339910	+		10747	31961	7341	7357	12219	12219					0.017704172143453434
EGPIPGEWV	9	Unmodified	_EGPIPGEWV_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.79901123046875	2	492.245275	982.475997	-0.14502	-7.1384E-05	2.2785	0.0011216	2.1334	0.0010502	492.24790810071954	52.628	0.81143	52.37	51.992	52.803	-0.25839					34	20	3	0	0	0	0.024477	1	5509	5509		27.882	13.745	1	130750	+		10748	26228	7342	7358	12220	12220					-0.015942078564762596
EGPIPGEWV	9	Unmodified	_EGPIPGEWV_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.245275	982.475997	-0.41744	-0.00020548	13.366	0.0065796	12.949	0.0063741	492.2514547403119	52.287	0.28532	52.379	52.16	52.445	0.091938	0.070274	0.007377	NaN	27.882	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37935	+		10749	26228	7342	7358							-0.015942078564762596
EGPIPGEWV	9	Unmodified	_EGPIPGEWV_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.245275	982.475997	-1.1087	-0.00054577	7.2452	0.0035664	6.1365	0.0030207	492.24885887965837	52.416	0.46578	52.297	51.974	52.44	-0.11875	-0.011826	0.0013507	NaN	27.882	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133000	+		10750	26228	7342	7358							-0.015942078564762596
EGPKFKLL	8	Unmodified	_EGPKFKLL_					0	0	0			REV__ENST00000566581.5_1_15:34656208-34656274:-|nuORF	REV__ENST00000566581.5_1_15:34656208-34656274:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7377624511719	2	466.284203	930.553853	-0.59244	-0.00027625	-4.476	-0.0020871	-5.0685	-0.0023633	466.2820676987695	45.086	0.65227	45.086	44.793	45.445	0					48	18	4	0	0	0	0.027866	1	4340	4340		60.972	5.4677	1	1420400	+		10751	35302	7343	7359	12221	12221					0.08579849799582462
EGPLLHLTVE	10	Unmodified	_EGPLLHLTVE_					0	0	0			REV__nc|ENSG00000150712|Q9C0I1-3|MTMR12	REV__nc|ENSG00000150712|Q9C0I1-3|MTMR12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.7852783203125	2	554.305864	1106.59717	-1.1929	-0.00066126	0.99493	0.00055149	-0.19802	-0.00010976	554.3063000564559	43.868	1.0795	43.724	42.986	44.065	-0.14471					78	29	4	0	0	0	0.03519	1	4054	4054		26.693	0	1	3895200	+		10752	24731	7344	7360	12222	12222					0.04813994786195508
EGPNGFKKP	9	Unmodified	_EGPNGFKKP_					0	0	0			REV__nc|ENSG00000100201|Q92841-1|DDX17	REV__nc|ENSG00000100201|Q92841-1|DDX17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7956237792969	2	487.258717	972.50288	-0.45324	-0.00022084	3.4709	0.0016912	3.0177	0.0014704	487.2602443330157	30.949	0.3687	30.77	30.583	30.952	-0.17818					16	8	2	0	0	0	0.024457	1	1997	1997		29.15	10.825	1	188950	+		10753	21063	7345	7361	12223	12223					0.015529007547115725
EGPPEKPGIG	10	Unmodified	_EGPPEKPGIG_					0	0	0			REV__ENSG00000172732|ENST00000308110|MUS81	REV__ENSG00000172732|ENST00000308110|MUS81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2716979980469	2	490.756007	979.497461	0.29383	0.0001442	2.3147	0.0011359	2.6085	0.0012801	490.756767004133	39.557	1.44	39.557	39.041	40.481	0					54	40	2	0	0	0	0.03519	1	3506	3506		40.778	0.20554	1	290060	+		10754	26701	7346	7362	12224	12224					0.006891771722507656
EGPPEKPGIG	10	Unmodified	_EGPPEKPGIG_					0	0	0			REV__ENSG00000172732|ENST00000308110|MUS81	REV__ENSG00000172732|ENST00000308110|MUS81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2610778808594	2	490.756007	979.497461	-0.94175	-0.00046217	3.9211	0.0019243	2.9794	0.0014621	490.75766507599445	39.605	1.1983	39.503	38.945	40.143	-0.10238					49	32	2	0	0	0	0.03519	1	3501	3501		23.523	0	1	288250	+		10755	26701	7346	7362	12225	12225					0.006891771722507656
EGPQSGVFLH	10	Unmodified	_EGPQSGVFLH_					0	0	0			REV__SH2D5|p.S231Rfs*14|1|0.05|ENSG00000189410|chr1:20724191-20724191|A/-|frameshift_variant	REV__SH2D5|p.S231Rfs*14|1|0.05|ENSG00000189410|chr1:20724191-20724191|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3316650390625	2	535.766906	1069.51926	-0.1965	-0.00010528	3.7817	0.0020261	3.5852	0.0019208	535.7690854601415	47.338	0.47495	47.068	46.837	47.311	-0.26939					18	12	2	0	0	0	0.03519	1	4576	4576		36.447	15.5	1	370060	+		10756	28120	7347	7363	12226	12226					-0.012720180791802704
EGPRLPTVA	9	Unmodified	_EGPRLPTVA_					0	0	0			REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF	REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2843017578125	2	470.266542	938.51853	-0.2356	-0.00011079	-0.17338	-8.1537E-05	-0.40898	-0.00019233	470.2664934518169	51.553	0.56319	51.405	51.046	51.609	-0.14735					20	15	2	0	0	0	0.024477	1	5393	5393		35.618	19.976	1	157670	+		10757	27761	7348	7364	12227	12227					0.0468118727176261
EGPRLPTVA	9	Unmodified	_EGPRLPTVA_					0	0	0			REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF	REV__ENST00000470863.1_1_1:246490478-246670519:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.266542	938.51853	-0.4447	-0.00020913	0.65216	0.00030669	0.20746	9.7559E-05	470.26647804104084	51.646	0.24021	51.733	51.577	51.818	0.087006	0.16374	0.0005723	NaN	27.882	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63497	+		10758	27761	7348	7364							0.0468118727176261
EGPRPKGPR	9	Unmodified	_EGPRPKGPR_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2859802246094	2	497.283057	992.551562	-0.80717	-0.00040139	3.5209	0.0017509	2.7137	0.0013495	497.2846807909162	35.795	0.65409	35.59	35.265	35.919	-0.20518					40	17	3	0	0	0	0.82115	1	2766	2766		37.812	2.1932	1	3454800			10759	3747	7349	7365	12228	12228					0.054988141144804104
EGPSCPRK	8	Unmodified	_EGPSCPRK_					0	0	0			REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF	REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.24737548828125	2	437.215995	872.417436	-0.68658	-0.00030019	0.88857	0.0003885	0.20199	8.8312E-05	437.21635790773485	34.92	0.63448	34.898	34.712	35.347	-0.021767					21	16	2	0	0	0	0.027866	1	2690	2690		57.811	25.856	1	72287	+		10760	30177	7350	7366	12229	12229					-0.023875877025943737
EGPTGILGQP	10	Unmodified	_EGPTGILGQP_					0	0	0			REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.31134033203125	2	484.756007	967.497461	-0.62273	-0.00030187	0.53529	0.00025948	-0.087443	-4.2388E-05	484.75593844128764	44.56	0.37402	44.597	44.375	44.749	0.0369					13	10	2	0	0	0	0.03519	1	4171	4171		26.063	0	1	98523	+		10761	19513	7351	7367	12230	12230					0.012411771722554477
EGPTGILGQP	10	Unmodified	_EGPTGILGQP_					0	0	0			REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.756007	967.497461	-1.22	-0.00059139	2.4461	0.0011857	1.2261	0.00059435	484.75695335244427	44.678	0.40868	44.529	44.322	44.73	-0.1488	-0.033976	0.0005599	NaN	37.508	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91768	+		10762	19513	7351	7367							0.012411771722554477
EGPTMETVETS	11	Unmodified	_EGPTMETVETS_					0	0	0			REV__ENSG00000167625|ENST00000301215|ZNF526	REV__ENSG00000167625|ENST00000301215|ZNF526	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	590.7796630859375	2	590.755543	1179.49653	0.0073134	4.3204E-06	2.9744	0.0017572	2.9817	0.0017615	591.2588907711921	84.373	0.2136	84.169	84.081	84.294	-0.20329					6	4	2	0	0	0	0.024731	1	10195	10195		35.152	12.11	1	36277	+		10763	26168	7352	7368	12231	12231					-0.08603450049622552
EGPVHRGM	8	Unmodified	_EGPVHRGM_					0	0	0			REV__ENST00000439986.8_1_18:57122156-57136788:-|nuORF	REV__ENST00000439986.8_1_18:57122156-57136788:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7145080566406	2	441.716162	881.41777	-0.143	-6.3167E-05	-3.0229	-0.0013353	-3.1659	-0.0013984	441.7145119181069	31.128	2.6513	31.197	29.518	32.169	0.06896					212	64	6	0	0	0	1.0239	1	1986	1986		33.516	3.0119	1	2819600	+		10764	32519	7353	7369	12232	12232					-0.02768167982731029
EGPVLVTPK	9	Unmodified	_EGPVLVTPK_					0	0	0			REV__ENST00000399295.2_1_21:35747926-35748193:+|nuORF	REV__ENST00000399295.2_1_21:35747926-35748193:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2689208984375	2	470.279118	938.543683	0.16462	7.7419E-05	0.38045	0.00017892	0.54508	0.00025634	470.2792847378073	78.114	0.91059	78.13	77.78	78.69	0.015907					36	21	3	0	0	0	0.024257	1	9626	9626		49.536	3.5841	1	258030	+		10765	31824	7354	7370	12233	12233					0.07195242074351427
EGPVLVTPK	9	Unmodified	_EGPVLVTPK_					0	0	0			REV__ENST00000399295.2_1_21:35747926-35748193:+|nuORF	REV__ENST00000399295.2_1_21:35747926-35748193:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.279118	938.543683	0.64151	0.00030169	-0.77837	-0.00036605	-0.13686	-6.4364E-05	470.2791673433557	78.302	0.34186	78.071	77.75	78.091	-0.23141	-0.0079328	-0.00055371	NaN	49.536	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56714	+		10766	31824	7354	7370							0.07195242074351427
EGQAGKKWM	9	Unmodified	_EGQAGKKWM_					0	0	0			REV__ENSG00000157259|ENST00000287957|GATAD1	REV__ENSG00000157259|ENST00000287957|GATAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2642211914062	2	517.758027	1033.5015	-0.67835	-0.00035122	0.086691	4.4885E-05	-0.59166	-0.00030634	517.7578786427562	30.084	0.98154	30.093	29.556	30.538	0.0086689					40	23	3	0	0	0	0.024381	1	1913	1913		37.159	17.162	1	366740	+		10767	25122	7355	7371	12234	12234					-0.013910566057120377
EGQGIQCDIP	10	Unmodified	_EGQGIQCDIP_					0	0	0		MAST2|p.K455Q|1|0.24|ENSG00000086015|chr1:46022022-46022022|A/C|missense_variant	MAST2|p.K455Q|1|0.24|ENSG00000086015|chr1:46022022-46022022|A/C|missense_variant	MAST2|p.K455Q|1|0.24|ENSG00000086015|chr1:46022022-46022022|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.75537109375	2	530.242406	1058.47026	0.48967	0.00025964	4.2957	0.0022778	4.7853	0.0025374	530.2441547429449	74.655	1.1378	74.472	74.049	75.187	-0.18279					44	26	3	0	0	0	0.03519	1	8892	8892		36.447	10.873	1	277340			10768	17954	7356	7372	12235	12235					-0.056636744304796593
EGQKGLDSL	9	Unmodified	_EGQKGLDSL_					0	0	0			REV__ENST00000483505.6_1_17:26684735-26687632:+|nuORF	REV__ENST00000483505.6_1_17:26684735-26687632:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.76947021484375	2	473.745639	945.476725	-0.25951	-0.00012294	-0.41131	-0.00019486	-0.67082	-0.0003178	473.7460586369175	29.871	0.50473	29.627	29.4	29.905	-0.24415					21	11	3	0	0	0	0.020937	1	1876	1876		110.12	16.924	1	61417	+		10769	33512	7357	7373	12236	12236					0.0018058679257819676
EGQKGLDSL	9	Unmodified	_EGQKGLDSL_					0	0	0			REV__ENST00000483505.6_1_17:26684735-26687632:+|nuORF	REV__ENST00000483505.6_1_17:26684735-26687632:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.76922607421875	2	473.745639	945.476725	-0.63932	-0.00030287	1.9448	0.00092136	1.3055	0.00061849	473.7463966997408	29.761	0.37779	29.588	29.325	29.703	-0.17258					12	8	2	0	0	0	0.022657	1	1852	1852		98.629	8.0285	1	57568	+		10770	33512	7357	7373	12237	12237					0.0018058679257819676
EGQKSREAPI	10	Unmodified	_EGQKSREAPI_					0	0	0		nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;ACIN1|p.R638Vfs*15|1|0.12|ENSG00000100813|chr14:23079585-23079597|GTGACCTTGATCT/-|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1	nc|ENSG00000100813|Q9UKV3-5|ACIN1	nc|ENSG00000100813|Q9UKV3-5|ACIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.7984008789062	2	557.796195	1113.57784	0.35901	0.00020025	2.8272	0.001577	3.1862	0.0017773	557.7977399723883	82.037	1.2861	81.808	81.271	82.557	-0.22891					75	29	4	0	0	0	0.74632	1	9893	9893		64.207	5.4253	1	2078200			10771	18128	7358	7374	12238	12238					0.02559038495292043
EGQLKLNLP	9	Unmodified	_EGQLKLNLP_					0	0	0			REV__ENSG00000182983|ENST00000440367|ZNF662	REV__ENSG00000182983|ENST00000440367|ZNF662	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7922668457031	2	506.295299	1010.57605	-1.1223	-0.00056821	-0.24531	-0.0001242	-1.3676	-0.00069241	506.29490040259356	43.749	0.54632	43.749	43.44	43.987	0					23	14	2	0	0	0	0.023817	1	4156	4156		34.173	0	1	292900	+		10772	27523	7359	7375	12239	12239					0.07118029477317123
EGQRLLLM	8	Unmodified	_EGQRLLLM_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|8|1|sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|8|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2694091796875	2	480.27077	958.526987	-0.20934	-0.00010054	-2.7739	-0.0013322	-2.9832	-0.0014328	480.2692585827361	67.114	0.94209	66.869	66.64	67.582	-0.24517					51	23	3	0	0	0	0.81662	1	7709	7709		57.811	7.7867	1	3512200	+		10773	36102	7360	7376	12240	12240					0.04606417916727423
EGQTRLLV	8	Unmodified	_EGQTRLLV_					0	0	0		nc|ENSG00000065054|Q15599-2|NHERF2;ENSG00000065054|ENST00000424542|NHERF2	nc|ENSG00000065054|Q15599-2|NHERF2	nc|ENSG00000065054|Q15599-2|NHERF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.26629638671875	2	458.266542	914.51853	-1.1953	-0.00054775	1.263	0.00057881	0.067764	3.1054E-05	458.26695720914114	28.625	0.97029	28.38	28.041	29.011	-0.24524					54	22	4	0	0	0	0.99042	1	1712	1712		38.806	0	1	1818100			10774	1290	7361	7377	12241	12241					0.05785187271771974
EGRGNIPGSAV	11	Unmodified	_EGRGNIPGSAV_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.7737426757812	2	528.775262	1055.53597	-1.0521	-0.00055634	1.0047	0.00053127	-0.047418	-2.5074E-05	528.775699899275	32.129	0.88378	32.129	31.869	32.753	0					61	22	4	0	0	0	0.72712	2	2210	2199;2210		62.107	3.8612	1	2917500			10775	3937	7362	7378	12242;12243	12243					0.010424828067471026
EGRPLLGLV	9	Unmodified	_EGRPLLGLV_					0	0	0			REV__ENSG00000168092|ENST00000527958|PAFAH1B2	REV__ENSG00000168092|ENST00000527958|PAFAH1B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2930603027344	2	477.292559	952.570566	1.0469	0.00049967	-1.2575	-0.0006002	-0.21064	-0.00010054	477.2918016788199	51.378	0.88774	51.378	50.882	51.77	0					47	24	3	0	0	0	0.72875	1	5452	5452		44.117	4.864	1	2997200	+		10776	26231	7363	7379	12244	12244					0.09238350685507157
EGRRRPGG	8	Unmodified	_EGRRRPGG_					0	0	0		ENST00000569706.5_1_16:718199-718313:+|nuORF	ENST00000569706.5_1_16:718199-718313:+|nuORF	ENST00000569706.5_1_16:718199-718313:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7746887207031	2	442.744099	883.473646	-0.54382	-0.00024077	-1.7153	-0.00075944	-2.2591	-0.0010002	442.74317425327615	21.685	0.14552	21.756	21.684	21.83	0.071487					4	2	2	0	0	0	0.027866	1	646	646		25.45	0	1	3957.1			10777	17008	7364	7380	12245	12245					0.027248012490872497
EGRRVSLSI	9	Unmodified	_EGRRVSLSI_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.77264404296875	2	508.795998	1015.57744	-0.60472	-0.00030768	-2.1266	-0.001082	-2.7313	-0.0013897	508.7947182784483	33.529	0.44248	33.535	33.321	33.764	0.0066223					18	11	2	0	0	0	0.024025	1	2433	2433		62.107	1.8135	1	153110	+		10778	29247	7365	7381	12246	12246					0.07027663566088904
EGRVHAQLE	9	Unmodified	_EGRVHAQLE_					0	0	0			REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.30517578125	2	519.76998	1037.52541	0.023721	1.233E-05	1.1827	0.00061473	1.2064	0.00062706	519.7699673322463	94.191	1.15	94.043	93.26	94.41	-0.14771					72	26	4	0	0	0	0.024313	1	11516	11516		42.864	3.6114	1	316910	+		10779	21772	7366	7382	12247	12247					0.008145001523189421
EGRVHAQLE	9	Unmodified	_EGRVHAQLE_					0	0	0			REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.76998	1037.52541	-0.35349	-0.00018373	2.7408	0.0014246	2.3873	0.0012409	519.7710587766977	94.125	2.391	94.124	93.83	96.221	-0.00022888	0.0021306	-0.00015132	NaN	42.864	102	56	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1138900	+		10780	21772	7366	7382							0.008145001523189421
EGRVHAQLE	9	Unmodified	_EGRVHAQLE_					0	0	0			REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.76998	1037.52541	0.55429	0.0002881	4.3282	0.0022497	4.8825	0.0025378	519.7722720086897	94.173	0.8436	94.051	93.798	94.641	-0.12215	-0.071494	0.0014988	NaN	42.864	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285860	+		10781	21772	7366	7382							0.008145001523189421
EGRVPNISL	9	Unmodified	_EGRVPNISL_					0	0	0			REV__ENST00000464606.5_1_7:138749633-138758612:-|nuORF	REV__ENST00000464606.5_1_7:138749633-138758612:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7674560546875	2	492.777274	983.539994	-0.34985	-0.0001724	-2.2286	-0.0010982	-2.5784	-0.0012706	492.7759763604821	40.966	0.30945	40.989	40.73	41.04	0.023006					11	8	2	0	0	0	0.02435	1	3576	3576		26.693	0	1	114680	+		10782	32982	7367	7383	12248	12248					0.04756572300470907
EGRWMQKL	8	Unmodified	_EGRWMQKL_					0	0	0		ENST00000551964.5_2_12:99042099-99042222:+|nuORF	ENST00000551964.5_2_12:99042099-99042222:+|nuORF	ENST00000551964.5_2_12:99042099-99042222:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2901000976562	2	524.273844	1046.53313	-0.010933	-5.7316E-06	-4.2025	-0.0022033	-4.2134	-0.002209	524.2706812461225	71.754	0.4754	71.479	71.354	71.829	-0.27509					17	11	2	0	0	0	0.027866	1	8414	8414		37.159	2.9866	1	184440			10783	16610	7368	7384	12249	12249					0.011729361482593958
EGSEPWLL	8	Unmodified	_EGSEPWLL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2534484863281	2	465.732	929.449448	-0.15976	-7.4404E-05	1.388	0.00064646	1.2283	0.00057205	465.7326397449535	40.039	0.42355	39.814	39.581	40.004	-0.225					21	10	3	0	0	0	0.027866	1	3448	3448		26.796	1.3459	1	172090	+		10784	22942	7369	7385	12250	12250					-0.01809896747795392
EGSFNTSSVS	10	Unmodified	_EGSFNTSSVS_					0	0	0			REV__ENSG00000239305|ENST00000237455|RNF103	REV__ENSG00000239305|ENST00000237455|RNF103	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7361145019531	2	507.722361	1013.43017	-0.39571	-0.00020091	-0.97459	-0.00049482	-1.3703	-0.00069573	507.72195905609874	39.872	0.19003	39.642	39.507	39.697	-0.23021					6	4	2	0	0	0	0.03519	1	3388	3388		87.696	12.653	1	66565	+		10785	28948	7370	7386	12251	12251					-0.07600897829377118
EGSHIVQHKI	10	Unmodified	_EGSHIVQHKI_					0	0	0			REV__ENSG00000189420|ENST00000338647|ZFP92	REV__ENSG00000189420|ENST00000338647|ZFP92	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	573.78564453125	2	574.314554	1146.61456	-0.60133	-0.00034535	-3.805	-0.0021853	-4.4063	-0.0025306	574.3112118721574	70.452	0.50517	70.465	70.308	70.813	0.012413					29	11	3	0	0	0	0.03519	1	8451	8451		87.696	25.589	1	843800	+		10786	28121	7371	7387	12252	12252					0.04711335111846893
EGSIPRAKS	9	Unmodified	_EGSIPRAKS_					0	0	0			REV__ENST00000265734.8_1_7:92462693-92462771:-|nuORF	REV__ENST00000265734.8_1_7:92462693-92462771:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.78643798828125	2	472.761623	943.508694	1.3007	0.0006149	2.2893	0.0010823	3.59	0.0016972	472.76265089876046	87.554	0.40595	87.575	87.391	87.797	0.021263					13	9	2	0	0	0	0.024427	1	10926	10926		19.997	9.1312	1	36945	+		10787	29744	7372	7388	12253	12253					0.034679992663768644
EGSMPSPRGDL	11	Unmodified	_EGSMPSPRGDL_					0	0	0		nc|ENSG00000099840|Q1ZYL8-3|IZUMO4;ENST00000497445.5_1_19:2096872-2097684:+|nuORF	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.3013305664062	2	573.266413	1144.51827	0.90973	0.00052152	0.26314	0.00015085	1.1729	0.00067237	573.266767857655	67.793	0.45386	67.538	67.367	67.821	-0.25516					23	10	3	0	0	0	0.024741	1	7848	7848		37.812	5.8567	1	133410			10788	15593	7373	7389	12254	12254					-0.04820600510379336
EGSRPAPSL	9	Unmodified	_EGSRPAPSL_					0	0	0			REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.75628662109375	2	457.240524	912.466495	0.0067191	3.0722E-06	-0.57824	-0.00026439	-0.57152	-0.00026132	457.24008358722847	31.277	0.61231	31.346	30.955	31.567	0.068962					22	14	2	0	0	0	0.0242	1	1992	1992		69.628	41.745	1	166120	+		10789	22663	7374	7390	12255	12255					0.0067602385800000775
EGSVRRIL	8	Unmodified	_EGSVRRIL_					0	0	0		ENSG00000187791|ENST00000340783|FAM205C;nc|ENSG00000187791|A6NFA0|SPATA31F3	ENSG00000187791|ENST00000340783|FAM205C	ENSG00000187791|ENST00000340783|FAM205C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7642822265625	2	465.279983	928.545414	-0.58521	-0.00027229	-0.43237	-0.00020117	-1.0176	-0.00047346	465.27962202584473	33.135	0.75871	33.141	32.776	33.534	0.0066261					44	20	5	0	0	0	0.027866	1	2390	2390		42.474	7.2737	1	330570			10790	9661	7375	7391	12256	12256					0.07828295882939074
EGSVRRIL	8	Unmodified	_EGSVRRIL_					0	0	0		ENSG00000187791|ENST00000340783|FAM205C;nc|ENSG00000187791|A6NFA0|SPATA31F3	ENSG00000187791|ENST00000340783|FAM205C	ENSG00000187791|ENST00000340783|FAM205C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.279983	928.545414	-0.82055	-0.00038178	0.1325	6.1651E-05	-0.68804	-0.00032013	465.27987673456835	33.232	0.47984	33.232	32.941	33.421	0	0.058234	0.00043132	NaN	25.45	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348470			10791	9661	7375	7391							0.07828295882939074
EGSVSPMHGSM	11	Unmodified	_EGSVSPMHGSM_					0	0	0		ENST00000370680.5_1_1:84650852-84662333:+|nuORF	ENST00000370680.5_1_1:84650852-84662333:+|nuORF	ENST00000370680.5_1_1:84650852-84662333:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.7382202148438	2	559.733891	1117.45323	-0.22559	-0.00012627	0.28717	0.00016074	0.061584	3.4471E-05	559.733305679884	61.235	0.40682	61.029	60.81	61.217	-0.20599					11	9	2	0	0	0	0.024768	1	6854	6854		31.53	18.076	1	101140			10792	12969	7376	7392	12257	12257					-0.10079918307906155
EGTARGIVI	9	Unmodified	_EGTARGIVI_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ATP1A4|p.A316Cfs*27|1|0.08|ENSG00000132681|chr1:160164315-160164316|-/T|frameshift_variant;ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.2663269042969	2	458.266542	914.51853	-0.42969	-0.00019691	0.43263	0.00019826	0.0029407	1.3476E-06	458.2665680426582	28.534	1.129	28.382	28.04	29.169	-0.15195					61	26	3	0	0	0	0.59099	1	1667	1667		53.351	3.9099	1	2205600			10793	943;4639	7377	7393	12258	12258					0.05785187271760606
EGTIKVLPS	9	Unmodified	_EGTIKVLPS_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7845458984375	2	472.276575	942.538597	-1.3134	-0.00062029	1.205	0.00056908	-0.10844	-5.1215E-05	472.277009087613	26.014	0.61113	25.851	25.588	26.199	-0.16331					22	17	2	0	0	0	0.024405	1	1237	1237		27.882	19.651	1	307600	+		10794	24676	7378	7394	12259	12259					0.06502938211713172
EGTIKVLPS	9	Unmodified	_EGTIKVLPS_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.276575	942.538597	0.66491	0.00031402	3.9241	0.0018532	4.589	0.0021673	472.27943675317107	25.206	0.49269	25.286	25.006	25.499	0.080088	-0.31005	0.0027486	NaN	37.812	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88899	+		10795	24676	7378	7394							0.06502938211713172
EGTIKVLPS	9	Unmodified	_EGTIKVLPS_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.276575	942.538597	-0.098701	-4.6614E-05	0.47986	0.00022663	0.38116	0.00018001	472.2765908081177	25.823	0.46879	25.652	25.457	25.925	-0.17078	0.055744	-0.00050467	NaN	37.812	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282240	+		10796	24676	7378	7394							0.06502938211713172
EGTKAFTK	8	Unmodified	_EGTKAFTK_					0	0	0		HIST1H2BD|p.V119F|1|0.25|ENSG00000158373|chr6:26158524-26158524|G/T|missense_variant	HIST1H2BD|p.V119F|1|0.25|ENSG00000158373|chr6:26158524-26158524|G/T|missense_variant	HIST1H2BD|p.V119F|1|0.25|ENSG00000158373|chr6:26158524-26158524|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.85394287109375	2	441.239993	880.465432	-0.0073508	-3.2435E-06	1.4874	0.0006563	1.48	0.00065306	441.2404342061881	31.898	0.67604	31.74	31.569	32.245	-0.15772					28	15	2	0	0	0	0.027866	1	2131	2131		29.15	11.785	1	213960			10797	17737	7379	7395	12260	12260					0.020418094890828797
EGTKALLEVQL	11	Unmodified	_EGTKALLEVQL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.8994445800781	3	400.899328	1199.67615	1.2356	0.00049535	-0.77206	-0.00030952	0.46354	0.00018583	400.8989499978565	54.927	1.1231	54.927	54.591	55.715	0					65	31	4	0	0	0	0.053737	2	6023	6023;6035		120.63	15.465	1	4021800			10798	2126	7380	7396	12261;12262	12261					0.0843022202047905
EGTKALLEVQL	11	Unmodified	_EGTKALLEVQL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.8995056152344	3	400.899328	1199.67615	0.42642	0.00017095	0.57284	0.00022965	0.99926	0.0004006	400.89926246653636	54.998	0.86873	54.848	54.541	55.409	-0.15036					67	24	4	0	0	0	0.0041948	1	6015	6015		147.3	29.598	1	3854500			10799	2126	7380	7396	12263	12263					0.0843022202047905
EGTKALLEVQL	11	Unmodified	_EGTKALLEVQL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.89947509765625	3	400.899328	1199.67615	2.711	0.0010868	-1.7859	-0.00071597	0.92511	0.00037088	400.8982737116245	54.63	0.91246	54.728	54.458	55.371	0.098015					71	25	5	0	0	0	0.27523	1	5922	5922		91.469	7.1586	1	3858000			10800	2126	7380	7396	12264	12264					0.0843022202047905
EGTMLKRLI	9	Unmodified	_EGTMLKRLI_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1;ENST00000529244.1_1_11:65786296-65788320:-|nuORF	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	530.812802	1059.61105	-0.37104	-0.00019695	-1.5745	-0.00083574	-1.9455	-0.0010327	530.8117825625393	40.016	0.33252	40.016	39.843	40.176	0					14	8	2	0	0	0	0.024506	1	3484	3484		23.042	0	1	95289			10801	8547	7381	7397	12265	12265					0.08362949013644538
EGTPALRAVP	10	Unmodified	_EGTPALRAVP_					0	0	0		ENST00000586863.5_1_19:10655729-10662652:+|nuORF	ENST00000586863.5_1_19:10655729-10662652:+|nuORF	ENST00000586863.5_1_19:10655729-10662652:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7142333984375	2	505.785099	1009.55564	-0.36487	-0.00018455	-3.1469	-0.0015917	-3.5118	-0.0017762	505.78256406818	31.365	0.71233	31.18	31.023	31.736	-0.18503					23	17	2	0	0	0	0.03519	1	2089	2089		64.207	28.589	1	128760			10802	17254	7382	7398	12266	12266					0.05124858817521272
EGTQWSLMYY	10	Oxidation (M)	_EGTQWSLM(Oxidation (M))YY_		EGTQWSLM(1)YY		EGTQWSLM(73)YY	0	0	1		ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	431.8523254394531	3	431.85339	1292.53834	-0.7648	-0.00033028	-2.0818	-0.00089902	-2.8466	-0.0012293	431.85247151761774	45.974	1.8951	45.823	45.512	47.407	-0.15157					170	52	5	0	0	0	0.6365	1	4497	4497		72.879	16.445	1	17548000			10803	5735	7383	7399	12267	12267		245			-0.09622849570450853
EGTRHATT	8	Unmodified	_EGTRHATT_					0	0	0		sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.762939453125	2	436.714673	871.414794	1.3805	0.00060289	3.8877	0.0016978	5.2682	0.0023007	436.7162269040845	36.988	0.91013	36.988	36.613	37.523	0					48	23	3	0	0	0	0.027866	1	2924	2924		24.203	0	1	1115900			10804	37926	7384	7400	12268	12268					-0.026057198359126232
EGTRRVVKP	9	Unmodified	_EGTRRVVKP_					0	0	0		ENSG00000214978|ENST00000399363|GSG1L2	ENSG00000214978|ENST00000399363|GSG1L2	ENSG00000214978|ENST00000399363|GSG1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7694702148438	2	521.311815	1040.60908	-0.59225	-0.00030875	3.4947	0.0018218	2.9024	0.0015131	521.3133675381949	52.564	0.80537	52.295	51.907	52.712	-0.26903					30	20	2	0	0	0	0.024288	1	5465	5465		36.447	0	1	272370			10805	10576	7385	7401	12269	12269					0.09039656320032918
EGTVGGPLLL	10	Unmodified	_EGTVGGPLLL_					0	0	0		ENST00000609590.1_1_6:167417751-167458021:+|nuORF;nc|ENSG00000272980|O95684-2|CEP43;ENSG00000213066|ENST00000366847|CEP43;ENST00000494781.5_1_6:167412945-167425107:+|nuORF	ENST00000609590.1_1_6:167417751-167458021:+|nuORF	ENST00000609590.1_1_6:167417751-167458021:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7928161621094	2	478.276575	954.538597	0.045886	2.1946E-05	0.44773	0.00021414	0.49361	0.00023608	478.27611938740887	54.074	0.44071	53.877	53.619	54.06	-0.19739					30	13	3	0	0	0	0.03519	1	5713	5713		37.159	2.9866	1	818900			10806	10489	7386	7402	12270	12270					0.0595093821170849
EGVDGEIL	8	Unmodified	_EGVDGEIL_					0	0	0			REV__ENSG00000165312|ENST00000376495|OTUD1	REV__ENSG00000165312|ENST00000376495|OTUD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.891357421875	2	416.208358	830.402163	-0.21472	-8.9368E-05	-1.614	-0.00067176	-1.8287	-0.00076113	416.2081764041304	33.947	0.24194	33.723	33.561	33.803	-0.22412					10	5	3	0	0	0	0.027866	1	2446	2446		33.516	19.74	1	27401	+		10807	25873	7387	7403	12271	12271					-0.01982176018782411
EGVGPMGQFG	10	Oxidation (M)	_EGVGPM(Oxidation (M))GQFG_		EGVGPM(1)GQFG		EGVGPM(57)GQFG	0	0	1			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.71697998046875	2	497.718567	993.422581	-0.04779	-2.3786E-05	-2.9965	-0.0014914	-3.0443	-0.0015152	497.7168472322407	36.831	1.4517	36.638	35.898	37.35	-0.193					78	37	3	0	0	0	0.85955	3	2927	2892;2903;2927		56.721	10.769	1	3340800	+		10808	27935	7388	7404	12272;12273;12274	12274		828			-0.07439328630619002
EGVGPMGQFG	10	Oxidation (M)	_EGVGPM(Oxidation (M))GQFG_		EGVGPM(1)GQFG		EGVGPM(57)GQFG	0	0	1			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.71722412109375	2	497.718567	993.422581	-0.2645	-0.00013165	-2.8699	-0.0014284	-3.1344	-0.0015601	497.7169283000998	36.809	1.2594	36.592	36.015	37.274	-0.21661					74	31	3	0	0	0	0.85955	3	2927	2879;2891;2927		56.721	14.325	1	3306000	+		10809	27935	7388	7404	12275;12276;12277	12277		828			-0.07439328630619002
EGVHCQEL	8	Carbamidomethyl (C)	_EGVHC(Carbamidomethyl (C))QEL_	EGVHC(1)QEL		EGVHC(50)QEL		0	1	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2139892578125	2	486.216192	970.41783	0.28892	0.00014048	-4.0685	-0.0019782	-3.7796	-0.0018377	486.2144773560208	97.787	3.7885	97.785	95.99	99.778	-0.0020752					163	87	3	0	0	0	0.91239	1	12385	12385		50.025	11.218	1	279470			10810	7855;17923	7389	7405	12278	12278	94				-0.06856212773391235
EGVQKLVSL	9	Unmodified	_EGVQKLVSL_					0	0	0			REV__ENST00000555208.1_1_14:77795315-77795561:+|nuORF	REV__ENST00000555208.1_1_14:77795315-77795561:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7900085449219	2	486.78985	971.565146	-0.084576	-4.1171E-05	-0.36461	-0.00017749	-0.44919	-0.00021866	486.7896047044664	51.855	0.92472	51.855	51.466	52.391	0					71	25	5	0	0	0	0.26966	1	5543	5543		79.713	4.6693	1	4112200	+		10811	21133	7390	7406	12279	12279					0.07822627103041668
EGVSNQRTI	9	Unmodified	_EGVSNQRTI_					0	0	0			REV__ENSG00000206052|ENST00000382713|DOK6	REV__ENSG00000206052|ENST00000382713|DOK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2742004394531	2	502.261988	1002.50942	0.021672	1.0885E-05	2.6047	0.0013083	2.6264	0.0013191	502.7638262473047	34.223	1.0606	33.999	33.844	34.904	-0.22412					29	26	2	0	0	0	0.023635	1	2603	2603		76.774	5.3962	1	579900	+		10812	28699	7391	7407	12280	12280					0.008267939154393389
EGWFGQVQ	8	Unmodified	_EGWFGQVQ_					0	0	0		ENST00000353214.6_1_9:127639469-127639550:+|nuORF	ENST00000353214.6_1_9:127639469-127639550:+|nuORF	ENST00000353214.6_1_9:127639469-127639550:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.26031494140625	2	475.721967	949.429381	-0.90428	-0.00043019	3.814	0.0018144	2.9097	0.0013842	475.7237104206519	43.704	0.46056	43.485	43.211	43.672	-0.21938					21	12	2	0	0	0	0.027866	1	4024	4024		30.504	14.867	1	394580			10813	12611	7392	7408	12281	12281					-0.04735647687743949
EGWRSPRSQ	9	Unmodified	_EGWRSPRSQ_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3261108398438	2	551.773054	1101.53155	-0.16669	-9.1976E-05	3.0048	0.001658	2.8381	0.001566	551.7747259126637	54.103	0.34483	53.905	53.68	54.025	-0.19739					17	10	2	0	0	0	0.024447	1	5734	5734		25.574	0	1	401290			10814	1307	7393	7409	12282	12282					-0.015149816161510898
EGYFREFF	8	Unmodified	_EGYFREFF_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.8025512695312	2	547.750724	1093.4869	-0.60141	-0.00032942	-3.7281	-0.0020421	-4.3295	-0.0023715	547.7486135028767	30.495	0.80308	30.251	29.905	30.708	-0.24415					53	18	4	0	0	0	0.027866	1	1994	1994		33.516	1.5607	1	1075600	+		10815	24084	7394	7410	12283	12283					-0.056108054822061604
EGYFRQSSI	9	Unmodified	_EGYFRQSSI_					0	0	0			REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5	REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8021850585938	2	543.764363	1085.51417	-0.32399	-0.00017618	0.91881	0.00049962	0.59482	0.00032344	543.7647139291853	57.674	0.77994	57.499	56.866	57.646	-0.1749					46	20	4	0	0	0	0.024405	1	6370	6370		35.618	0	1	408230	+		10816	27299	7395	7411	12284	12284					-0.025163219417891014
EGYGRYLDL	9	Unmodified	_EGYGRYLDL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3471092-3471287:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2805786132812	2	543.266739	1084.51892	-1.0719	-0.00058234	1.2955	0.0007038	0.22358	0.00012146	543.2670297058361	62.174	0.34596	61.997	61.883	62.229	-0.17782					12	8	3	0	0	0	0.024367	1	6997	6997		52.937	12.159	1	276130			10817	9229	7396	7412	12285	12285					-0.019954377990416106
EGYIKKLL	8	Unmodified	_EGYIKKLL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2965393066406	2	482.29731	962.580068	0.38607	0.0001862	-0.84319	-0.00040667	-0.45712	-0.00022047	482.2968322647328	46.128	0.79769	46.031	45.741	46.539	-0.096653					62	21	4	0	0	0	0.2917	1	4420	4420		115.46	12.686	1	5795100			10818	2247;11034	7397	7413	12286	12286					0.09728118971031563
EGYIKKLL	8	Unmodified	_EGYIKKLL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.29669189453125	2	482.29731	962.580068	-0.29432	-0.00014195	-0.05717	-2.7573E-05	-0.35149	-0.00016952	482.29720747956003	46.362	0.99538	46.101	45.777	46.773	-0.26118					69	26	4	0	0	0	0.30538	1	4443	4443		110.34	24.978	1	4596400			10819	2247;11034	7397	7413	12287	12287					0.09728118971031563
EGYIKKLL	8	Unmodified	_EGYIKKLL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.29638671875	2	482.29731	962.580068	-0.47755	-0.00023032	-0.17994	-8.6785E-05	-0.65749	-0.00031711	482.29718230963323	46.228	0.79198	46.025	45.744	46.536	-0.20226					63	21	4	0	0	0	0.44658	2	4421	4421;4432		90.777	8.4716	1	5311400			10820	2247;11034	7397	7413	12288;12289	12288					0.09728118971031563
EGYIRFTCTE	10	Unmodified	_EGYIRFTCTE_					0	0	0			REV__ENST00000573957.1_1_17:7497970-7499300:-|nuORF	REV__ENST00000573957.1_1_17:7497970-7499300:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2351989746094	3	406.853501	1217.53867	-0.16435	-6.6868E-05	-3.078	-0.0012523	-3.2424	-0.0013192	406.8518398584588	29.783	0.80204	29.611	29.07	29.872	-0.17258					23	18	2	0	0	0	0.03519	1	1769	1769		24.232	0	1	206750	+		10821	23039	7398	7414	12290	12290					-0.06139429850600209
EGYLWCLP	8	Unmodified	_EGYLWCLP_					0	0	0			REV__ENST00000262067.4_1_7:16823147-16823477:+|nuORF	REV__ENST00000262067.4_1_7:16823147-16823477:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.28216552734375	2	490.730946	979.447339	-0.4268	-0.00020944	-0.21574	-0.00010587	-0.64254	-0.00031532	490.7307074303179	48.872	0.57217	48.719	48.469	49.041	-0.15277					27	15	2	0	0	0	0.027866	1	4979	4979		28.254	2.8041	1	402700	+		10822	29649	7399	7415	12291	12291					-0.04320648757277468
EGYVDGVLLL	10	Unmodified	_EGYVDGVLLL_					0	0	0			REV__ENSG00000078269|ENST00000355585|SYNJ2;REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__ENSG00000078269|ENST00000355585|SYNJ2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7989501953125	2	539.294965	1076.57538	1.0242	0.00055236	3.9554	0.0021331	4.9796	0.0026855	539.7990135217475	17.307	0.35091	17.153	17.007	17.358	-0.15403					15	6	3	0	0	0	1.1056	1	176	176		31.955	5.2619	1	74645	+		10823	20608;36477	7400	7416	12292	12292					0.04015190037625871
EGYVKVQV	8	Unmodified	_EGYVKVQV_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.2555847167969	2	461.255643	920.496732	-0.29326	-0.00013527	-0.058059	-2.678E-05	-0.35132	-0.00016205	461.25570378778764	46.316	0.89721	46.055	45.739	46.637	-0.26118					46	23	3	0	0	0	0.71833	1	4446	4446		65.803	7.0212	1	1738000			10824	5315	7401	7417	12293	12293					0.0333038252319966
EGYYTFHFLYF	11	Unmodified	_EGYYTFHFLYF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2655029296875	3	496.227444	1485.6605	-1.0326	-0.0005124	-1.0663	-0.00052915	-2.0989	-0.0010416	496.2269106794663	37.686	0.30811	37.603	37.469	37.777	-0.082516					13	8	2	0	0	0	0.024792	1	3063	3063		18.531	0	1	72826			10825	3043	7402	7418	12294	12294					-0.06290064496556624
EHASLFRKVRR	11	Unmodified	_EHASLFRKVRR_					0	0	0			REV__nc|ENSG00000127325|Q8N1M1-5|BEST3	REV__nc|ENSG00000127325|Q8N1M1-5|BEST3	MSMS	OPSCC_39_ClassI_Rep-1	1	466.9425964355469	3	466.940743	1397.8004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.911	1	97.911	97.411	98.411	0								0	0	0	1.5542	1	12498	12498		12.957	2.3707	1		+		10826	22926	7403	7419	12295	12295					0.11741157351139009
EHCATTVMAV	10	Unmodified	_EHCATTVMAV_					0	0	0			REV__ENSG00000160307|ENST00000291700|S100B	REV__ENSG00000160307|ENST00000291700|S100B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3006591796875	2	531.241352	1060.46815	-1.0586	-0.00056238	2.3699	0.001259	1.3113	0.00069663	531.2425888612795	39.213	0.3221	38.989	38.789	39.111	-0.22311					13	8	2	0	0	0	0.03519	1	3264	3264		23.042	12.177	1	121780	+		10827	25310	7404	7420	12296	12296					-0.05966426439931638
EHCFQELQKL	10	Unmodified	_EHCFQELQKL_					0	0	0		ENSG00000180263|ENST00000343958|FGD6;nc|ENSG00000180263|Q6ZV73-2|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	ENSG00000180263|ENST00000343958|FGD6	ENSG00000180263|ENST00000343958|FGD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.18206787109375	3	425.544779	1273.61251	-0.16747	-7.1264E-05	1.251	0.00053234	1.0835	0.00046108	425.5455973325015	34.658	0.19641	34.479	34.331	34.527	-0.17857					7	4	2	0	0	0	0.03519	1	2553	2553		26.063	0	1	46934			10828	8969	7405	7421	12297	12297					-0.013354616882907067
EHCSYPRR	8	Unmodified	_EHCSYPRR_					0	0	0			REV__ENST00000465558.5_1_2:219612840-219617731:+|nuORF	REV__ENST00000465558.5_1_2:219612840-219617731:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3038940429688	2	524.243075	1046.4716	-0.52398	-0.00027469	0.0071065	3.7255E-06	-0.51687	-0.00027097	524.242776605441	88.227	0.40067	88.056	87.855	88.255	-0.17054					21	9	3	0	0	0	0.027866	1	10771	10771		31.955	4.0726	1	153650	+		10829	23593	7406	7422	12298	12298					-0.0497799555103029
EHDFATDWRNL	11	Unmodified	_EHDFATDWRNL_					0	0	0			REV__nc|ENSG00000116062|P52701-4|MSH6	REV__nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.71533203125	3	468.549469	1402.62658	0.86157	0.00040369	1.9267	0.00090277	2.7883	0.0013065	468.5503998377531	25.475	0.6713	25.555	25.294	25.966	0.08009					30	15	3	0	0	0	0.024821	1	1211	1211		9.6461	0	1	276950	+		10830	22255	7407	7423	12299	12299					-0.05863092935624081
EHEKKKLED	9	Unmodified	_EHEKKKLED_					0	0	0		nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;ENSG00000163798|ENST00000326019|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	MSMS	OPSCC_40_ClassI_Rep-2	5	578.3074340820312	2	578.303852	1154.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.21	1	110.07	109.57	110.57	-0.13983								0	0	0	0.68716	1	13519	13519		23.042	3.0457	1				10831	18452	7408	7424	12300	12300					0.022039052924583302
EHELHLDQSL	10	Unmodified	_EHELHLDQSL_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF;ENST00000472398.5_1_21:38529111-38558109:+|nuORF;nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3	ENST00000399586.2_1_X:74960734-74966719:-|nuORF;nc|ENSG00000182670|P53804-3|TTC3	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.26373291015625	3	407.535048	1219.58332	-1.1942	-0.0004867	1.9959	0.00081341	0.80168	0.00032671	407.53578261719383	21.6	0.96792	21.387	21.118	22.086	-0.2128					40	19	3	0	0	0	0.03519	1	643	643		16.007	0	1	657420			10832	13650;9153	7409	7425	12301	12301					-0.017692827128939825
EHEQIKSEY	9	Unmodified	_EHEQIKSEY_					0	0	0		PRUNE2|p.P2524H|1|0.12|ENSG00000106772|chr9:76704042-76704042|G/T|missense_variant	PRUNE2|p.P2524H|1|0.12|ENSG00000106772|chr9:76704042-76704042|G/T|missense_variant	PRUNE2|p.P2524H|1|0.12|ENSG00000106772|chr9:76704042-76704042|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.723388671875	2	581.772385	1161.53022	-0.09041	-5.2598E-05	0.56997	0.00033159	0.47956	0.00027899	581.772267061449	37.498	0.39388	37.305	37.114	37.508	-0.193					21	9	3	0	0	0	0.024292	1	3047	3047		68.787	15.435	1	331660			10833	18999	7410	7426	12302	12302					-0.04408660495573713
EHEQIKSEY	9	Unmodified	_EHEQIKSEY_					0	0	0		PRUNE2|p.P2524H|1|0.12|ENSG00000106772|chr9:76704042-76704042|G/T|missense_variant	PRUNE2|p.P2524H|1|0.12|ENSG00000106772|chr9:76704042-76704042|G/T|missense_variant	PRUNE2|p.P2524H|1|0.12|ENSG00000106772|chr9:76704042-76704042|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.7230224609375	2	581.772385	1161.53022	-1.8123	-0.0010544	2.9111	0.0016936	1.0988	0.00063925	581.7732579121232	37.456	0.43106	37.236	37.037	37.468	-0.2195					26	10	4	0	0	0	0.024292	1	3040	3040		68.787	0	1	303950			10834	18999	7410	7426	12303	12303					-0.04408660495573713
EHEVDVKTP	9	Unmodified	_EHEVDVKTP_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.323974609375	2	527.264196	1052.51384	0.1381	7.2817E-05	-1.2017	-0.00063361	-1.0636	-0.00056079	527.2648772122653	32.295	0.26344	32.102	31.986	32.249	-0.19262					6	5	2	0	0	0	0.024466	1	2215	2215		39.253	0	1	22655			10835	10655	7411	7427	12304	12304					-0.01031741661677188
EHEYSFVS	8	Unmodified	_EHEYSFVS_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.2186584472656	2	499.216714	996.418876	-0.073445	-3.6665E-05	3.2697	0.0016323	3.1963	0.0015956	499.21823760934916	32.389	0.7966	32.152	31.867	32.664	-0.23666					51	18	4	0	0	0	0.93274	1	2243	2243		47.916	5.5195	1	3192800			10836	7756	7412	7428	12305	12305					-0.07947675132845688
EHFMPVKIGN	10	Unmodified	_EHFMPVKIGN_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.3436279296875	2	586.300059	1170.58556	-0.32594	-0.0001911	4.1443	0.0024298	3.8184	0.0022387	586.8041407567428	91.303	1.2691	91.164	90.823	92.093	-0.13942					54	29	3	0	0	0	0.03519	1	11133	11133		35.618	12.096	1	201350			10837	5804	7413	7429	12306	12306					0.007094744912137685
EHFMPVKIGN	10	Unmodified	_EHFMPVKIGN_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	586.300059	1170.58556	-2.2468	-0.0013173	7.3087	0.0042851	5.0619	0.0029678	586.3040289340454	91.303	1.0064	91.303	91.133	92.139	0	0.051553	0.0022927	NaN	27.882	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62059			10838	5804	7413	7429							0.007094744912137685
EHFMPVKIGN	10	Unmodified	_EHFMPVKIGN_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	586.300059	1170.58556	-1.7137	-0.0010047	5.5191	0.0032358	3.8054	0.0022311	586.3032948325877	91.386	1.0683	91.237	90.933	92.001	-0.1487	-0.014625	0.00019414	NaN	27.882	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63432			10839	5804	7413	7429							0.007094744912137685
EHFMPVKIGN	10	Unmodified	_EHFMPVKIGN_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	586.300059	1170.58556	-1.1886	-0.00069689	5.0807	0.0029788	3.8921	0.0022819	586.8049819223136	91.426	1.1458	91.303	90.874	92.02	-0.12341	0.05115	-0.00031987	NaN	27.882	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123950			10840	5804	7413	7429							0.007094744912137685
EHFSTLYY	8	Unmodified	_EHFSTLYY_					0	0	0			REV__OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	REV__OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.241455078125	2	530.242732	1058.47091	-0.098714	-5.2342E-05	-3.2866	-0.0017427	-3.3853	-0.0017951	530.2408927350496	110.12	1.4041	110.13	109.79	111.2	0.0059204					101	50	3	0	0	0	1.0574	1	13953	13953		15.636	0.97212	1	137900	+		10841	24374	7414	7430	12307	12307					-0.055985117190857636
EHFVKKVE	8	Unmodified	_EHFVKKVE_					0	0	0		ENST00000600065.5_1_19:15492734-15508647:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L	ENST00000600065.5_1_19:15492734-15508647:-|nuORF	ENST00000600065.5_1_19:15492734-15508647:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3082580566406	2	508.282192	1014.54983	-0.18494	-9.4003E-05	-2.5554	-0.0012989	-2.7404	-0.0013929	508.7837539152891	41.423	0.19584	41.287	41.176	41.372	-0.13553					9	4	3	0	0	0	0.027866	1	3668	3668		38.806	25.847	1	36986			10842	890	7415	7431	12308	12308					0.04313760305853975
EHGQKVVIIP	10	Unmodified	_EHGQKVVIIP_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.310791015625	2	560.329673	1118.64479	-0.91524	-0.00051283	0.49234	0.00027587	-0.4229	-0.00023696	560.3301228564479	51.74	0.4403	51.593	51.406	51.846	-0.14735					22	12	3	0	0	0	0.03519	1	5473	5473		47.657	0	1	408780	+		10843	22949	7416	7432	12309	12309					0.09021693777026485
EHGSQAAAAR	10	Unmodified	_EHGSQAAAAR_					0	0	0		nc|ENSG00000146054|Q9C029-1|TRIM7;ENSG00000146054|ENST00000274773|TRIM7	nc|ENSG00000146054|Q9C029-1|TRIM7	nc|ENSG00000146054|Q9C029-1|TRIM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2183837890625	2	499.244129	996.473705	-0.58648	-0.0002928	-4.3931	-0.0021932	-4.9796	-0.002486	499.2412785053472	32.484	0.36525	32.326	32.079	32.444	-0.15772					16	8	3	0	0	0	0.03519	1	2194	2194		37.812	8.662	1	55016			10844	5852	7417	7433	12310	12310					-0.02467243541593689
EHHEWYLRKFE	11	Unmodified	_EHHEWYLRKFE_					0	0	0		ENSG00000145545|ENST00000274192|SRD5A1;ENST00000513117.1_1_5:6633573-6668378:+|nuORF	ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2692260742188	3	525.256397	1572.74736	-1.265	-0.00066446	-3.5597	-0.0018698	-4.8247	-0.0025342	525.2544872803059	35.451	0.43251	35.429	35.196	35.629	-0.021767					17	10	2	0	0	0	0.024892	1	2685	2685		8.7993	2.1397	1	147300			10845	5819	7418	7434	12311	12311					-0.016102652221889002
EHHIVGVLN	9	Unmodified	_EHHIVGVLN_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2796630859375	2	509.277441	1016.54033	-0.34185	-0.0001741	-0.29036	-0.00014787	-0.63221	-0.00032197	509.2774401754386	35.445	1.3986	35.23	34.833	36.232	-0.21555					120	37	6	0	0	0	0.78069	1	2665	2665		40.573	7.057	1	8834000	+		10846	22676	7419	7435	12312	12312					0.03271992020336256
EHHIVGVLN	9	Unmodified	_EHHIVGVLN_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2794494628906	2	509.277441	1016.54033	-0.57041	-0.0002905	-0.1011	-5.149E-05	-0.67152	-0.00034199	509.27752290278903	35.432	2.1234	35.22	34.806	36.93	-0.21246					149	55	7	0	0	0	0.80658	1	2659	2659		38.806	0.99462	1	8310200	+		10847	22676	7419	7435	12313	12313					0.03271992020336256
EHHIVGVLN	9	Unmodified	_EHHIVGVLN_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2798156738281	2	509.277441	1016.54033	-0.53702	-0.00027349	-0.2358	-0.00012009	-0.77282	-0.00039358	509.2774489461317	35.354	1.7074	35.167	34.76	36.467	-0.18675					157	45	7	0	0	0	0.78069	2	2640	2640;2652		40.573	5.1588	1	9291900	+		10848	22676	7419	7435	12314;12315	12314					0.03271992020336256
EHIAKANEL	9	Unmodified	_EHIAKANEL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2987670898438	2	512.774731	1023.53491	0.20319	0.00010419	2.6825	0.0013755	2.8857	0.0014797	512.7762538136578	23.467	1.0241	23.265	22.499	23.523	-0.20193					30	20	2	0	0	0	0.024457	1	870	870		45.952	17.698	1	86869			10849	6479	7420	7436	12316	12316					0.024082684378413433
EHIELVVL	8	Unmodified	_EHIELVVL_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.27740478515625	2	476.279118	950.543683	0.64004	0.00030484	-3.3782	-0.001609	-2.7382	-0.0013041	476.2773369098286	19.232	0.59422	19.032	18.761	19.355	-0.2001					24	11	3	0	0	0	1.0572	1	397	397		28.254	2.8041	1	261830			10850	8056	7421	7437	12317	12317					0.06643242074335376
EHIKELLAI	9	Unmodified	_EHIKELLAI_					0	0	0		nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;nc|ENSG00000048052|Q9UKV0-4|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8056640625	2	533.318774	1064.623	-0.91474	-0.00048785	-0.97778	-0.00052147	-1.8925	-0.0010093	533.318841762011	45.245	0.64571	45.245	44.934	45.58	0					35	18	3	0	0	0	0.024323	1	4345	4345		27.882	0	1	1201300			10851	18046	7422	7438	12318	12318					0.09326889028443475
EHILRNPVR	9	Unmodified	_EHILRNPVR_					0	0	0			REV__nc|ENSG00000006282|Q8TB22-3|SPATA20	REV__nc|ENSG00000006282|Q8TB22-3|SPATA20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.329833984375	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.94809	1	11428	11428		29.15	0	1	14972000	+		10852	19827	7423	7439	12319	12319					0.08550747585650242
EHILSFETI	9	Unmodified	_EHILSFETI_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3154907226562	2	544.784764	1087.55498	-0.37492	-0.00020425	0.092277	5.0271E-05	-0.28265	-0.00015398	544.7841651844841	91.37	0.54333	91.382	91.074	91.617	0.011276					20	11	2	0	0	0	0.024263	1	11450	11450		51.335	3.3759	1	186300			10853	17112	7424	7440	12320	12320					0.014700193778253379
EHILSFETI	9	Unmodified	_EHILSFETI_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.784764	1087.55498	-0.98533	-0.00053679	-0.37688	-0.00020532	-1.3622	-0.00074211	544.7840131044828	91.313	0.75993	91.301	91.075	91.835	-0.012383	-0.039471	-0.00061488	NaN	51.335	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231510			10854	17112	7424	7440							0.014700193778253379
EHIRVYQPCT	10	Unmodified	_EHIRVYQPCT_					0	0	0			REV__ENSG00000198429|ENST00000429654|ZNF69	REV__ENSG00000198429|ENST00000429654|ZNF69	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.1956481933594	3	415.873007	1244.59719	-0.44565	-0.00018533	-0.075955	-3.1588E-05	-0.5216	-0.00021692	416.20693330729097	42.553	0.37969	42.321	42.042	42.422	-0.23186					14	9	2	0	0	0	0.03519	1	3792	3792		13.508	0	1	76089	+		10855	28422	7425	7441	12321	12321					-0.015323284854730446
EHIRVYQPCT	10	Unmodified	_EHIRVYQPCT_					0	0	0			REV__ENSG00000198429|ENST00000429654|ZNF69	REV__ENSG00000198429|ENST00000429654|ZNF69	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	415.873007	1244.59719	-0.22785	-9.4757E-05	1.8592	0.0007732	1.6314	0.00067845	415.87368571084085	42.837	0.19955	42.724	42.576	42.775	-0.11253	0.25322	0.00032049	NaN	13.508	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89969	+		10856	28422	7425	7441							-0.015323284854730446
EHKKHATD	8	Unmodified	_EHKKHATD_					0	0	0		nc|ENSG00000163312|Q8TDG4-2|HELQ;nc|ENSG00000163312|Q8TDG4-4|HELQ;HELQ|p.K1025Sfs*15|1|0.09|ENSG00000163312|chr4:83416856-83416857|-/ATTTCTATAGA|frameshift_variant;ENSG00000163312|ENST00000295488|HELQ	nc|ENSG00000163312|Q8TDG4-2|HELQ	nc|ENSG00000163312|Q8TDG4-2|HELQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.596923828125	2	483.243598	964.472643	-0.28023	-0.00013542	-2.69	-0.0012999	-2.9702	-0.0014353	483.2422940154966	25.921	0.46879	25.75	25.457	25.925	-0.17078					18	12	2	0	0	0	0.027866	1	1290	1290		27.882	0	1	302580			10857	18444	7426	7442	12322	12322					-0.011014579104767108
EHKKLPQP	8	Unmodified	_EHKKLPQP_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7929992675781	2	488.782359	975.550165	-0.46488	-0.00022722	0.60327	0.00029487	0.13839	6.7643E-05	488.7825058241218	36.47	1.2828	36.265	35.819	37.102	-0.20518					68	33	3	0	0	0	0.027866	1	2825	2825		38.806	6.8513	1	776020			10858	7034	7427	7443	12323	12323					0.06141180025713311
EHKTNLLSKEW	11	Unmodified	_EHKTNLLSKEW_					0	0	0			REV__nc|ENSG00000161298|Q96SR6-3|ZNF382	REV__nc|ENSG00000161298|Q96SR6-3|ZNF382	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.76068115234375	3	462.245498	1383.71466	-0.21536	-9.9548E-05	2.7517	0.0012719	2.5363	0.0011724	462.2466464936186	49.016	0.84717	48.834	48.268	49.115	-0.18206					32	22	2	0	0	0	0.024779	1	4907	4907		27.644	9.1129	1	341380	+		10859	25381	7428	7444	12324	12324					0.03815527654978723
EHLDRNYFLS	10	Unmodified	_EHLDRNYFLS_					0	0	0		ENST00000466622.1_1_7:5028799-5028985:+|nuORF	ENST00000466622.1_1_7:5028799-5028985:+|nuORF	ENST00000466622.1_1_7:5028799-5028985:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.28240966796875	3	431.878926	1292.61495	-0.02756	-1.1903E-05	-3.7658	-0.0016264	-3.7934	-0.0016383	431.8771535149572	52.104	0.40903	52.104	51.942	52.351	0					15	10	2	0	0	0	0.03519	1	5542	5542		25.126	10.432	1	147760			10860	14817	7429	7445	12325	12325					-0.01965289958957328
EHLEPIDP	8	Unmodified	_EHLEPIDP_					0	0	0		ENSG00000151014|ENST00000280614|NOCT	ENSG00000151014|ENST00000280614|NOCT	ENSG00000151014|ENST00000280614|NOCT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.96142578125	2	475.234907	948.455261	0.59751	0.00028396	3.0508	0.0014498	3.6483	0.0017338	475.2361848871353	63.891	0.17838	63.639	63.48	63.659	-0.25141					5	4	2	0	0	0	0.027866	1	7448	7448		44.117	6.9577	1	40553			10861	6169	7430	7446	12326	12326					-0.021027982361488284
EHLFLLAR	8	Unmodified	_EHLFLLAR_					0	0	0		ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.25872802734375	2	499.792727	997.5709	-0.79133	-0.0003955	-3.694	-0.0018462	-4.4853	-0.0022417	499.79074745527697	32.937	0.36279	32.771	32.516	32.879	-0.16565					12	8	2	0	0	0	0.027866	1	2305	2305		38.806	0	1	78088			10862	13279	7431	7447	12327	12327					0.07201770405367824
EHLGFIEP	8	Unmodified	_EHLGFIEP_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7666931152344	2	471.239993	940.465432	0.51581	0.00024307	-3.558	-0.0016767	-3.0421	-0.0014336	471.2388896628733	71.076	0.42428	71.087	70.854	71.279	0.010735					25	10	4	0	0	0	0.027866	1	8553	8553		42.474	3.6683	1	258020	+		10863	26900	7432	7448	12328	12328					-0.007181905109177933
EHLGKRSL	8	Unmodified	_EHLGKRSL_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2722473144531	2	470.272158	938.529764	0.78232	0.0003679	-0.58843	-0.00027672	0.1939	9.1184E-05	470.2719727535752	96.621	0.94949	96.484	96.019	96.969	-0.1367					38	21	3	0	0	0	1.0574	1	11939	11939		21.96	4.5949	1	180240			10864	3823	7433	7449	12329	12329					0.05804009365908769
EHLGKRSL	8	Unmodified	_EHLGKRSL_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.272158	938.529764	0.023298	1.0957E-05	0.48759	0.0002293	0.51088	0.00024025	470.272518090924	96.522	0.76578	96.522	96.115	96.881	0	-0.01245	0.00098099	NaN	21.96	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96855			10865	3823	7433	7449							0.05804009365908769
EHLGKRSL	8	Unmodified	_EHLGKRSL_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	470.272158	938.529764	0.98613	0.00046375	-1.3529	-0.00063624	-0.3668	-0.00017249	470.2714188827994	96.517	0.56518	96.524	96.228	96.793	0.0065079	-0.011153	-0.00075009	NaN	21.96	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97609			10866	3823	7433	7449							0.05804009365908769
EHLGKRSL	8	Unmodified	_EHLGKRSL_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.272158	938.529764	1.6239	0.00076366	-0.42507	-0.0001999	1.1988	0.00056376	470.27220487752334	96.624	1.0486	96.624	96.231	97.28	-3.0518E-05	0.088944	0.0001226	NaN	21.96	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101480			10867	3823	7433	7449							0.05804009365908769
EHLGKRSL	8	Unmodified	_EHLGKRSL_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.272158	938.529764	-0.52653	-0.00024761	0.77914	0.00036641	0.25261	0.00011879	470.2725580166347	96.677	0.87502	96.52	96.214	97.089	-0.15646	-0.014476	0.0012552	NaN	21.96	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173550			10868	3823	7433	7449							0.05804009365908769
EHLKKSSQVP	10	Unmodified	_EHLKKSSQVP_					0	0	0		PDLIM7|p.G273Afs*84|1|0.3|ENSG00000196923|chr5:177489444-177489444|C/-|frameshift_variant;nc|ENSG00000196923|Q9NR12-2|PDLIM7;ENSG00000196923|ENST00000355841|PDLIM7	PDLIM7|p.G273Afs*84|1|0.3|ENSG00000196923|chr5:177489444-177489444|C/-|frameshift_variant	PDLIM7|p.G273Afs*84|1|0.3|ENSG00000196923|chr5:177489444-177489444|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.3068237304688	2	576.822212	1151.62987	-0.73423	-0.00042352	4.1323	0.0023836	3.3981	0.0019601	576.8243819200967	72.758	0.54724	72.56	72.289	72.836	-0.19811					30	12	3	0	0	0	0.03519	1	8520	8520		29.17	19.464	1	792460			10869	9934	7434	7450	12330	12330					0.06012201909038595
EHLLLFAF	8	Unmodified	_EHLLLFAF_					0	0	0		ABCA13|p.S3941F|1|0.06|ENSG00000179869|chr7:48392088-48392088|C/T|missense_variant	ABCA13|p.S3941F|1|0.06|ENSG00000179869|chr7:48392088-48392088|C/T|missense_variant	ABCA13|p.S3941F|1|0.06|ENSG00000179869|chr7:48392088-48392088|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2960510253906	2	495.276378	988.538203	-0.49192	-0.00024363	-0.66431	-0.00032902	-1.1562	-0.00057265	495.2758902616522	35.507	0.78899	35.321	34.798	35.587	-0.18675					30	20	2	0	0	0	0.027866	1	2665	2665		9.4706	0	1	365540			10870	3	7435	7451	12331	12331					0.043475632825106914
EHLPIRYT	8	Unmodified	_EHLPIRYT_					0	0	0			REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7900390625	2	514.779816	1027.54508	0.2486	0.00012798	3.4131	0.001757	3.6617	0.001885	514.7817667549481	79.816	0.50496	79.597	79.41	79.915	-0.21923					14	11	2	0	0	0	0.027866	1	9601	9601		25.45	21.766	1	71466	+		10871	34907	7436	7452	12332	12332					0.03240876163090434
EHLRVSAL	8	Unmodified	_EHLRVSAL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;ENST00000544576.1_1_8:145297127-145303835:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.28717041015625	2	462.766709	923.518865	-0.24461	-0.0001132	4.3834	0.0020285	4.1388	0.0019153	462.7685003905059	53.25	0.53769	53.25	52.901	53.439	0					23	14	2	0	0	0	0.027866	1	5709	5709		17.365	0	1	305330			10872	8927	7437	7453	12333	12333					0.054046069916125816
EHLTFLNKLE	10	Unmodified	_EHLTFLNKLE_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3362426757812	2	622.337695	1242.66084	0.2866	0.00017836	-2.18	-0.0013567	-1.8934	-0.0011783	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.1088	1	13560	13560		31.53	4.8369	1	1619900	+		10873	28285	7438	7454	12334	12334					0.0492135522326862
EHLVVLTP	8	Unmodified	_EHLVVLTP_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.23760986328125	2	454.26601	906.517468	0.17974	8.165E-05	-0.20334	-9.2369E-05	-0.023597	-1.0719E-05	454.26570840441605	59.245	0.72869	59.057	58.779	59.508	-0.18795					32	17	3	0	0	0	0.027866	1	6546	6546		33.516	1.5607	1	425320	+		10874	25096	7439	7455	12335	12335					0.060469729028341135
EHMRVVVKS	9	Unmodified	_EHMRVVVKS_					0	0	0		ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.7984619140625	2	542.800226	1083.5859	-0.26167	-0.00014204	-2.3667	-0.0012847	-2.6284	-0.0014267	542.7987316966224	31.963	0.80762	31.727	31.45	32.258	-0.23666					50	18	4	0	0	0	0.80003	1	2172	2172		39.253	5.0803	1	1189700			10875	7864	7440	7456	12336	12336					0.04744894211080464
EHMVKKLPPV	10	Unmodified	_EHMVKKLPPV_					0	0	0		nc|ENSG00000125775|Q9H190-3|SDCBP2;ENSG00000125775|ENST00000360779|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.341726	1176.6689	-1.9349	-0.0011403	3.84	0.002263	1.9051	0.0011227	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0781	1	11271	11271		35.618	0.46626	1	15816000			10876	4138	7441	7457	12337	12337					0.08763210939059718
EHMVKKLPPV	10	Unmodified	_EHMVKKLPPV_					0	0	0		nc|ENSG00000125775|Q9H190-3|SDCBP2;ENSG00000125775|ENST00000360779|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3427734375	2	589.341726	1176.6689	-0.33817	-0.0001993	2.1962	0.0012943	1.858	0.001095	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0393	1	11162	11162		40.778	2.9666	1	6196800			10877	4138	7441	7457	12338	12338					0.08763210939059718
EHPFVLQS	8	Unmodified	_EHPFVLQS_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.79779052734375	2	478.745442	955.476331	0.40021	0.0001916	-1.002	-0.0004797	-0.60179	-0.0002881	478.7451940416352	49.568	0.97824	49.387	49.116	50.094	-0.18071					52	25	3	0	0	0	0.027866	1	5065	5065		35.618	14.671	1	783140			10878	9712	7442	7458	12339	12339					-0.003187881366102374
EHPLCGKSRSP	11	Unmodified	_EHPLCGKSRSP_					0	0	0		ENST00000368474.8_1_1:154574483-154574669:-|nuORF	ENST00000368474.8_1_1:154574483-154574669:-|nuORF	ENST00000368474.8_1_1:154574483-154574669:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2375183105469	3	404.204757	1209.59244	-0.099788	-4.0335E-05	0.060147	2.4312E-05	-0.039642	-1.6023E-05	404.2048771022192	29.418	0.46905	29.418	29.223	29.692	0					17	11	2	0	0	0	0.024738	1	1837	1837		44.639	13.005	1	81197			10879	12897	7443	7459	12340	12340					-0.0039721262821785785
EHPLCGKSRSP	11	Unmodified	_EHPLCGKSRSP_					0	0	0		ENST00000368474.8_1_1:154574483-154574669:-|nuORF	ENST00000368474.8_1_1:154574483-154574669:-|nuORF	ENST00000368474.8_1_1:154574483-154574669:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	403.23748779296875	3	404.204757	1209.59244	-0.0043473	-1.7572E-06	0.55688	0.00022509	0.55253	0.00022333	404.20515925975576	29.486	0.622	29.49	29.129	29.751	0.0031357					20	15	2	0	0	0	0.024726	1	1822	1822		45.908	21.676	1	73627			10880	12897	7443	7459	12341	12341					-0.0039721262821785785
EHPRPVLL	8	Unmodified	_EHPRPVLL_					0	0	0		ENST00000318291.4_1_12:752234-753264:+|nuORF	ENST00000318291.4_1_12:752234-753264:+|nuORF	ENST00000318291.4_1_12:752234-753264:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.80096435546875	2	480.784902	959.55525	-0.10215	-4.9113E-05	-3.6329	-0.0017466	-3.7351	-0.0017958	480.78325829137253	94.215	0.52561	94.215	93.992	94.518	-0.00022888					18	12	3	0	0	0	0.027866	1	11925	11925		35.201	0	1	114260			10881	12172	7444	7460	12342	12342					0.0738548388833351
EHQEGNLRH	9	Unmodified	_EHQEGNLRH_					0	0	0			REV__ENSG00000123607|ENST00000243344|TTC21B	REV__ENSG00000123607|ENST00000243344|TTC21B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3109741210938	2	560.268136	1118.52172	0.077065	4.3177E-05	-0.22428	-0.00012566	-0.14721	-8.2479E-05	560.2680821858752	51.572	0.20223	51.572	51.431	51.633	0					8	5	2	0	0	0	0.024447	1	5485	5485		40.778	11.629	1	228340	+		10882	22711	7445	7461	12343	12343					-0.032801696215074116
EHQFEALGLL	10	Unmodified	_EHQFEALGLL_					0	0	0		nc|ENSG00000122986|Q96D96-2|HVCN1;nc|ENSG00000122986|Q96D96-4|HVCN1;nc|ENSG00000122986|Q96D96-3|HVCN1;ENSG00000122986|ENST00000242607|HVCN1	nc|ENSG00000122986|Q96D96-2|HVCN1	nc|ENSG00000122986|Q96D96-2|HVCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.3054809570312	2	578.803488	1155.59242	-0.69457	-0.00040202	1.7112	0.00099046	1.0167	0.00058844	578.8046979926827	76.83	0.54703	76.661	76.352	76.899	-0.16853					28	12	3	0	0	0	0.03519	1	9078	9078		20.947	10.081	1	335210			10883	3952	7446	7462	12344	12344					0.020851106434292888
EHQHIVAL	8	Unmodified	_EHQHIVAL_					0	0	0			REV__ENSG00000104825|ENST00000313582|NFKBIB	REV__ENSG00000104825|ENST00000313582|NFKBIB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2704772949219	2	473.758884	945.503215	0.017306	8.1988E-06	-2.9023	-0.001375	-2.885	-0.0013668	473.75720687617036	25.24	0.35099	25.24	25.052	25.403	0					11	8	2	0	0	0	0.027866	1	1148	1148		12.959	0	1	61564	+		10884	21468	7447	7463	12345	12345					0.028283204745775947
EHQLGHRSI	9	Unmodified	_EHQLGHRSI_					0	0	0			REV__MAPKAPK2-SRGAP2|1|fusion	REV__MAPKAPK2-SRGAP2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.7833862304688	2	538.783422	1075.55229	-0.59874	-0.00032259	0.37341	0.00020119	-0.22533	-0.00012141	538.7835057493455	19.293	0.63838	19.175	18.953	19.591	-0.11872					36	12	4	0	0	0	0.59498	1	382	382		53.089	8.7118	1	285990	+		10885	29138	7448	7464	12346	12346					0.017536087635335207
EHRDFEANR	9	Unmodified	_EHRDFEANR_					0	0	0			REV__ENSG00000105926|ENST00000222644|PALS2	REV__ENSG00000105926|ENST00000222644|PALS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	587.295166015625	2	587.273418	1172.53228	-0.81649	-0.0004795	-3.9752	-0.0023345	-4.7917	-0.002814	587.2702732685865	74.27	0.3835	74.012	73.86	74.244	-0.25887					16	8	3	0	0	0	0.024527	1	9081	9081		24.519	4.5224	1	361030	+		10886	21574	7449	7465	12347	12347					-0.04708186967104666
EHRGHHTF	8	Unmodified	_EHRGHHTF_					0	0	0		ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5;ENST00000507320.5_1_11:5624851-5625952:+|nuORF;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6	ENSG00000132256|ENST00000380034|TRIM5	ENSG00000132256|ENST00000380034|TRIM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2796630859375	2	510.741557	1019.46856	-0.18841	-9.6228E-05	0.612	0.00031258	0.4236	0.00021635	510.7426603400948	35.335	0.18694	35.119	34.95	35.137	-0.21555					5	4	2	0	0	0	0.027866	1	2665	2665		66.429	6.311	1	24957			10887	4584	7450	7466	12348	12348					-0.04039502613534296
EHRGHHTF	8	Unmodified	_EHRGHHTF_					0	0	0		ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5;ENST00000507320.5_1_11:5624851-5625952:+|nuORF;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6	ENSG00000132256|ENST00000380034|TRIM5	ENSG00000132256|ENST00000380034|TRIM5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.741557	1019.46856	-0.55756	-0.00028477	-1.1361	-0.00058025	-1.6937	-0.00086502	510.7410865326446	35.58	0.35742	35.367	35.154	35.511	-0.21246	0.12392	-0.0005952	NaN	66.429	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69414			10888	4584	7450	7466							-0.04039502613534296
EHRGPVQVT	9	Unmodified	_EHRGPVQVT_					0	0	0		ENST00000588938.1_1_19:39086232-39087718:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.77203369140625	2	511.772522	1021.53049	-0.36434	-0.00018646	-0.051082	-2.6142E-05	-0.41542	-0.0002126	511.7724385417964	31.562	1.1892	31.574	31.299	32.488	0.011797					47	29	3	0	0	0	0.30449	1	2104	2104		75.043	5.4157	1	1687100			10889	2602	7451	7467	12349	12349					0.020588040149505105
EHRGPVQVT	9	Unmodified	_EHRGPVQVT_					0	0	0		ENST00000588938.1_1_19:39086232-39087718:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.77203369140625	2	511.772522	1021.53049	-0.091097	-4.6621E-05	0.060307	3.0864E-05	-0.03079	-1.5757E-05	511.772271758729	31.706	0.97701	31.465	31.149	32.126	-0.24109					57	23	4	0	0	0	0.1158	1	2138	2138		107.01	0	1	1692100			10890	2602	7451	7467	12350	12350					0.020588040149505105
EHRGPVQVT	9	Unmodified	_EHRGPVQVT_					0	0	0		ENST00000588938.1_1_19:39086232-39087718:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	ENST00000588938.1_1_19:39086232-39087718:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	511.7724304199219	2	511.772522	1021.53049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.712	1	31.527	31.027	32.027	-0.18503								0	0	0	0.13281	1	2130	2130		85.161	16.374	1				10891	2602	7451	7467	12351	12351					0.020588040149505105
EHRHSPVPGG	10	Unmodified	_EHRHSPVPGG_					0	0	0		nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF;nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66;ENST00000531498.5_1_11:8665946-8673385:-|nuORF	nc|ENSG00000166436|O15016-3|TRIM66	nc|ENSG00000166436|O15016-3|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7850341796875	2	536.767771	1071.52099	-1.1424	-0.0006132	-2.0511	-0.001101	-3.1935	-0.0017142	536.7664678889852	55.793	0.6551	55.636	55.277	55.933	-0.15655					38	17	3	0	0	0	0.03519	1	6001	6001		30.318	11.993	1	1192300			10892	7559	7452	7468	12352	12352					-0.011909642705631995
EHRKLSSP	8	Unmodified	_EHRKLSSP_					0	0	0			REV__ENSG00000257446|ENST00000547628|ZNF878	REV__ENSG00000257446|ENST00000547628|ZNF878	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.75653076171875	2	477.261791	952.509028	0.52396	0.00025007	4.4097	0.0021046	4.9337	0.0023547	477.2638166514603	58.476	0.558	58.567	58.224	58.782	0.091217					25	14	2	0	0	0	0.027866	1	6504	6504		42.396	0	1	346030	+		10893	29090	7453	7469	12353	12353					0.03087418986240209
EHRRKWPS	8	Unmodified	_EHRRKWPS_					0	0	0			REV__ENST00000548710.5_3_12:49760692-49854587:+|nuORF	REV__ENST00000548710.5_3_12:49760692-49854587:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.767333984375	2	548.293956	1094.57336	-0.24561	-0.00013467	2.826	0.0015495	2.5803	0.0014148	548.7977802210448	32.565	0.95592	32.329	31.954	32.91	-0.23666					32	13	3	0	0	0	0.027866	1	2203	2203		31.955	11.958	1	217420	+		10894	34881	7454	7470	12354	12354					0.02985618863021955
EHSELQVF	8	Unmodified	_EHSELQVF_					0	0	0		ENST00000482371.5_1_7:107224374-107269308:+|nuORF	ENST00000482371.5_1_7:107224374-107269308:+|nuORF	ENST00000482371.5_1_7:107224374-107269308:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7405700683594	2	494.740357	987.46616	-0.74452	-0.00036835	0.68233	0.00033757	-0.062198	-3.0772E-05	494.74059134076685	53.446	1.7531	53.319	52.874	54.627	-0.12705					116	50	4	0	0	0	0.6536	1	5616	5616		71.296	7.9894	1	6980700			10895	15253	7455	7471	12355	12355					-0.028073958618506367
EHSELQVF	8	Unmodified	_EHSELQVF_					0	0	0		ENST00000482371.5_1_7:107224374-107269308:+|nuORF	ENST00000482371.5_1_7:107224374-107269308:+|nuORF	ENST00000482371.5_1_7:107224374-107269308:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7402648925781	2	494.740357	987.46616	-0.062591	-3.0966E-05	-0.036621	-1.8118E-05	-0.099212	-4.9084E-05	494.74021502667273	53.635	1.7588	53.39	52.975	54.733	-0.2453					117	51	4	0	0	0	0.71833	1	5638	5638		65.803	7.9919	1	6426300			10896	15253	7455	7471	12356	12356					-0.028073958618506367
EHSRERIW	8	Unmodified	_EHSRERIW_					0	0	0			REV__nc|ENSG00000123453|Q9UL12-2|SARDH	REV__nc|ENSG00000123453|Q9UL12-2|SARDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2652587890625	2	556.783422	1111.55229	-0.17896	-9.9642E-05	-3.6396	-0.0020265	-3.8186	-0.0021261	556.781728627794	52.733	0.52135	52.606	52.391	52.913	-0.12705					17	12	2	0	0	0	0.027866	1	5478	5478		63.306	0	1	120850	+		10897	22698	7456	7472	12357	12357					0.0009760876350810577
EHSVNMVTV	9	Unmodified	_EHSVNMVTV_					0	0	0			REV__ELOVL3|p.A4V|1|0.11|ENSG00000119915|chr10:102226559-102226559|C/T|missense_variant	REV__ELOVL3|p.A4V|1|0.11|ENSG00000119915|chr10:102226559-102226559|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.290283203125	2	508.247492	1014.48043	-0.92809	-0.0004717	-1.7932	-0.00091139	-2.7213	-0.0013831	508.24670372183306	33.262	0.43665	33.097	32.8	33.236	-0.16565					15	10	2	0	0	0	0.024523	1	2310	2310		29.15	1.2673	1	121570	+		10898	19747	7457	7473	12358	12358					-0.026230667052118406
EHSVNMVTV	9	Unmodified	_EHSVNMVTV_					0	0	0			REV__ELOVL3|p.A4V|1|0.11|ENSG00000119915|chr10:102226559-102226559|C/T|missense_variant	REV__ELOVL3|p.A4V|1|0.11|ENSG00000119915|chr10:102226559-102226559|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.247492	1014.48043	-0.19481	-9.9013E-05	-3.2878	-0.001671	-3.4826	-0.00177	508.24577087338537	33.247	0.19748	33.016	32.956	33.153	-0.23107	-0.04056	-0.00082598	NaN	20.947	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87345	+		10899	19747	7457	7473							-0.026230667052118406
EHTFTPREY	9	Unmodified	_EHTFTPREY_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3434448242188	2	590.275095	1178.53564	-1.2233	-0.00072209	0.39773	0.00023477	-0.82558	-0.00048732	590.2751452791972	89.588	1.0074	89.425	88.849	89.857	-0.1626					45	23	3	0	0	0	0.024457	1	10961	10961		45.952	21.749	1	420320			10900	18056	7458	7474	12359	12359					-0.046489369130767955
EHVLPHSM	8	Unmodified	_EHVLPHSM_					0	0	0			REV__nc|ENSG00000285231|A0A2R8YFM6|OOSP3	REV__nc|ENSG00000285231|A0A2R8YFM6|OOSP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.750732421875	2	475.231645	948.448736	0.29932	0.00014224	-0.069777	-3.316E-05	0.22954	0.00010908	475.2316697106131	32.157	0.72862	31.964	31.728	32.457	-0.19261					25	16	2	0	0	0	0.027866	1	2159	2159		26.796	14.589	1	119590	+		10901	37216	7459	7475	12360	12360					-0.027550146685030086
EHVLVESQV	9	Unmodified	_EHVLVESQV_					0	0	0			REV__ENST00000361937.7_1_15:41388064-41388549:-|nuORF	REV__ENST00000361937.7_1_15:41388064-41388549:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2767944335938	2	520.274564	1038.53457	4.9938	0.0025981	-0.58899	-0.00030644	4.4048	0.0022917	520.2741630842042	17.196	1.6143	17.256	17.081	18.695	0.06036					83	42	4	0	0	0	0.80003	1	107	107		39.253	3.6345	1	1037400	+		10902	30957	7460	7476	12361	12361					0.016848487179913718
EHVPREMAAE	10	Unmodified	_EHVPREMAAE_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.7863159179688	2	584.774405	1167.53426	-1.8458	-0.0010794	-1.0953	-0.00064048	-2.9411	-0.0017199	584.7730543225035	65.698	0.29147	65.485	65.296	65.588	-0.21327					15	6	3	0	0	0	0.03519	1	7517	7517		13.454	3.7484	1	66943			10903	7933	7461	7477	12362	12362					-0.04280894273506419
EHVRQWLE	8	Unmodified	_EHVRQWLE_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.29150390625	2	548.780348	1095.54614	-0.092283	-5.0643E-05	-1.2967	-0.00071163	-1.389	-0.00076227	548.7784734727962	72.587	0.93842	72.597	72.169	73.107	0.0097733					51	22	3	0	0	0	0.027866	1	8738	8738		47.916	0	1	1554000			10904	6224	7462	7478	12363	12363					0.002190905319821468
EHVSMEFS	8	Unmodified	_EHVSMEFS_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2685546875	2	483.205292	964.396032	-0.16404	-7.9264E-05	0.16668	8.0539E-05	0.0026379	1.2746E-06	483.20608331881937	46.584	0.29665	46.322	46.237	46.534	-0.26118					11	7	2	0	0	0	0.027866	1	4503	4503		35.201	3.2459	1	54512			10905	18550	7463	7479	12364	12364					-0.08759017521958867
EHVTPLIVSI	10	Unmodified	_EHVTPLIVSI_					0	0	0			REV__ENST00000487662.1_1_3:57643405-57651906:-|nuORF	REV__ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.7874755859375	2	554.324057	1106.63356	-0.40394	-0.00022391	-3.4379	-0.0019057	-3.8418	-0.0021296	554.3221811046046	81.157	3.4417	81.157	80.12	83.562	0					128	82	2	0	0	0	0.03519	1	10307	10307		47.657	12.457	1	346030	+		10906	26897	7464	7480	12365	12365					0.08450871682907746
EHVVVVRR	8	Unmodified	_EHVVVVRR_					0	0	0			REV__ENST00000454703.6_1_4:185705130-185747107:-|nuORF	REV__ENST00000454703.6_1_4:185705130-185747107:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.793212890625	2	497.30125	992.587947	-1.3245	-0.00065866	-0.79843	-0.00039706	-2.1229	-0.0010557	497.30074983643516	38.771	0.77922	38.607	38.05	38.829	-0.16458					47	21	3	0	0	0	0.027866	1	3227	3227		33.516	8.0654	1	1693200	+		10907	32766	7465	7481	12366	12366					0.09135691011192648
EHWKWRKKKEL	11	Unmodified	_EHWKWRKKKEL_					0	0	0		ENST00000568686.1_1_3:44161580-44161658:+|nuORF	ENST00000568686.1_1_3:44161580-44161658:+|nuORF	ENST00000568686.1_1_3:44161580-44161658:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.300537109375	3	523.300048	1566.87832	-0.078663	-4.1164E-05	1.1252	0.00058883	1.0466	0.00054767	523.3001775533797	17.612	0.79593	17.405	17.166	17.962	-0.20669					41	15	4	0	0	0	1.1107	1	204	204		8.4073	2.0864	1	106760			10908	16990	7466	7482	12367	12367					0.11755170216520128
EHWKWRKKKEL	11	Unmodified	_EHWKWRKKKEL_					0	0	0		ENST00000568686.1_1_3:44161580-44161658:+|nuORF	ENST00000568686.1_1_3:44161580-44161658:+|nuORF	ENST00000568686.1_1_3:44161580-44161658:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	523.300048	1566.87832	0.24278	0.00012705	-0.2069	-0.00010827	0.035883	1.8778E-05	523.2998105446335	17.61	0.47419	17.467	17.325	17.799	-0.14278	0.04315	0.0015765	NaN	8.4073	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21912			10909	16990	7466	7482							0.11755170216520128
EHWTSKAI	8	Unmodified	_EHWTSKAI_					0	0	0		TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant;nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5	TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant	TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.9281005859375	2	486.250892	970.48723	-0.051049	-2.4823E-05	-0.11276	-5.4828E-05	-0.16381	-7.9651E-05	486.2508618437582	45.458	0.44013	45.206	45.019	45.459	-0.25252					23	12	2	0	0	0	0.027866	1	4275	4275		27.882	6.9353	1	399410			10910	6993	7467	7483	12368	12368					0.0008061423766321241
EHYSDSAVEL	10	Unmodified	_EHYSDSAVEL_					0	0	0			REV__LCT|p.K435E|1|0.29|ENSG00000115850|chr2:135817745-135817745|T/C|missense_variant	REV__LCT|p.K435E|1|0.29|ENSG00000115850|chr2:135817745-135817745|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.8422241210938	2	575.256568	1148.49858	-0.84084	-0.0004837	4.1338	0.002378	3.293	0.0018943	575.2592685190623	26.764	0.49331	26.6	26.344	26.837	-0.16331					14	11	2	0	0	0	0.03519	1	1422	1422		34.173	0	1	153910	+		10911	36306	7468	7484	12369	12369					-0.06972653249522409
EHYYNAISV	9	Unmodified	_EHYYNAISV_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.8262939453125	2	548.258914	1094.50327	-0.43807	-0.00024018	0.051712	2.8352E-05	-0.38636	-0.00021182	548.2591014693868	94.602	0.85983	94.602	94.362	95.222	0					43	19	4	0	0	0	0.024436	1	12069	12069		38.806	0	1	149790			10912	10182	7469	7485	12370	12370					-0.0401972431611739
EIAIRKKP	8	Unmodified	_EIAIRKKP_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26995849609375	2	477.808377	953.6022	0.19563	9.3475E-05	-0.63873	-0.00030519	-0.4431	-0.00021172	477.80801382198797	34.858	0.86467	34.858	34.59	35.455	0					27	22	2	0	0	0	0.027866	1	2718	2718		38.806	0	1	151690	+		10913	20710	7470	7486	12371	12371					0.12354343439460536
EIAIRKVP	8	Unmodified	_EIAIRKVP_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7695007324219	2	463.295102	924.575651	-0.64428	-0.00029849	4.387	0.0020325	3.7427	0.001734	463.2952697448032	63.06	0.68031	63.06	62.729	63.41	0					60	17	5	0	0	0	0.027866	1	7411	7411		34.173	11.13	1	1914300			10914	3034	7471	7487	12372	12372					0.11034654548132039
EIAKAPLNMV	10	Unmodified	_EIAKAPLNMV_					0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.306396484375	2	543.30481	1084.59507	-0.87307	-0.00047434	4.4443	0.0024146	3.5712	0.0019403	543.3069637163121	36.493	0.77642	36.493	36.229	37.005	0					46	20	3	0	0	0	0.77808	1	2912	2912		62.107	9.1707	1	3186500	+		10915	22908	7472	7488	12373	12373					0.05615242776707419
EIAKKTQAL	9	Unmodified	_EIAKKTQAL_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;VCL-ADK|9|fusion;VCL-ADK|11|fusion;nc|ENSG00000156110|P55263-3|ADK;VCL-ADK|7|fusion;VCL-ADK|10|fusion;DNAJC19-ADK|4|fusion;DNAJC19-ADK|3|fusion;VCL-ADK|5|fusion;DNAJC19-ADK|2|fusion;DNAJC19-ADK|1|fusion;VCL-ADK|6|fusion;VCL-ADK|8|fusion;VCL-ADK|1|fusion;VCL-ADK|4|fusion;VCL-ADK|13|fusion;VCL-ADK|12|fusion;VCL-ADK|3|fusion	nc|ENSG00000156110|P55263-4|ADK;VCL-ADK|1|fusion	VCL-ADK|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.3025817871094	2	501.303124	1000.5917	-0.31526	-0.00015804	-0.28356	-0.00014215	-0.59882	-0.00030019	501.3029311140144	24.94	0.86609	24.713	24.365	25.231	-0.22683					50	19	4	0	0	0	0.10174	3	1128	1128;1138;1150		110.12	19.75	1	2301400			10916	6513;38140	7473	7489	12374;12375;12376	12374					0.09142315994370165
EIAKKTQAL	9	Unmodified	_EIAKKTQAL_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;VCL-ADK|9|fusion;VCL-ADK|11|fusion;nc|ENSG00000156110|P55263-3|ADK;VCL-ADK|7|fusion;VCL-ADK|10|fusion;DNAJC19-ADK|4|fusion;DNAJC19-ADK|3|fusion;VCL-ADK|5|fusion;DNAJC19-ADK|2|fusion;DNAJC19-ADK|1|fusion;VCL-ADK|6|fusion;VCL-ADK|8|fusion;VCL-ADK|1|fusion;VCL-ADK|4|fusion;VCL-ADK|13|fusion;VCL-ADK|12|fusion;VCL-ADK|3|fusion	nc|ENSG00000156110|P55263-4|ADK;VCL-ADK|1|fusion	VCL-ADK|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.30291748046875	2	501.303124	1000.5917	-0.22471	-0.00011265	-0.34743	-0.00017417	-0.57214	-0.00028682	501.3028624991617	24.621	0.8645	24.447	24.129	24.993	-0.17484					49	19	4	0	0	0	0.053401	2	1091	1080;1091		127.46	31.271	1	2302800			10917	6513;38140	7473	7489	12377;12378	12378					0.09142315994370165
EIAKKTQAL	9	Unmodified	_EIAKKTQAL_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;VCL-ADK|9|fusion;VCL-ADK|11|fusion;nc|ENSG00000156110|P55263-3|ADK;VCL-ADK|7|fusion;VCL-ADK|10|fusion;DNAJC19-ADK|4|fusion;DNAJC19-ADK|3|fusion;VCL-ADK|5|fusion;DNAJC19-ADK|2|fusion;DNAJC19-ADK|1|fusion;VCL-ADK|6|fusion;VCL-ADK|8|fusion;VCL-ADK|1|fusion;VCL-ADK|4|fusion;VCL-ADK|13|fusion;VCL-ADK|12|fusion;VCL-ADK|3|fusion	nc|ENSG00000156110|P55263-4|ADK;VCL-ADK|1|fusion	VCL-ADK|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.302734375	2	501.303124	1000.5917	1.5975	0.00080083	-2.3015	-0.0011537	-0.70401	-0.00035292	501.30189211317094	24.75	0.82714	24.569	24.198	25.025	-0.18089					51	18	4	0	0	0	0.091713	2	1084	1074;1084		113.41	11.228	1	2521700			10918	6513;38140	7473	7489	12379;12380	12380					0.09142315994370165
EIALLQQP	8	Unmodified	_EIALLQQP_					0	0	0			REV__nc|ENSG00000162761|Q8TE12-2|LMX1A	REV__nc|ENSG00000162761|Q8TE12-2|LMX1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.79766845703125	2	456.263468	910.512382	0.58885	0.00026867	-0.24374	-0.00011121	0.34511	0.00015746	456.26334687551446	64.308	1.1498	64.354	64.011	65.16	0.045502					60	30	3	0	0	0	0.027866	1	7568	7568		57.811	11.859	1	718950	+		10919	25488	7474	7490	12381	12381					0.053546690402299646
EIALTSLSL	9	Unmodified	_EIALTSLSL_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;nc|ENSG00000081842|Q9UN73-3|PCDHA6;ENSG00000081842|ENST00000529310|PCDHA6	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.7753601074219	2	473.776408	945.538263	0.76702	0.00036339	-1.951	-0.00092432	-1.184	-0.00056093	473.7757202043876	98.424	0.94422	98.434	98.19	99.135	0.010231					42	21	4	0	0	0	0.59099	1	12559	12559		53.351	0	1	484260			10920	10397;1717	7475	7491	12382	12382					0.06331518491856514
EIAQKNNAL	9	Unmodified	_EIAQKNNAL_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7749938964844	2	500.774731	999.534909	-0.88426	-0.00044281	0.022164	1.1099E-05	-0.86209	-0.00043171	500.7749931893693	30.016	0.75566	29.838	29.527	30.283	-0.17817					52	17	4	0	0	0	0.29104	1	1885	1885		76.847	8.3619	1	552940			10921	4704	7476	7492	12383	12383					0.03512268437839339
EIAQLQKKS	9	Unmodified	_EIAQLQKKS_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7978515625	2	522.806031	1043.59751	-0.054631	-2.8561E-05	4.208	0.0022	4.1534	0.0021714	522.8077768044423	71.396	0.30616	71.121	70.967	71.273	-0.27509					10	6	2	0	0	0	0.024495	1	8336	8336		19.997	9.1312	1	121130	+		10922	26891	7477	7493	12384	12384					0.07745414506052839
EIAQREIN	8	Unmodified	_EIAQREIN_					0	0	0			REV__nc|ENSG00000036549|Q8IYH5-4|ZZZ3	REV__nc|ENSG00000036549|Q8IYH5-4|ZZZ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.30950927734375	2	486.759081	971.503609	-0.73101	-0.00035582	0.75596	0.00036797	0.024952	1.2146E-05	486.75941091546963	44.649	0.35219	44.405	44.326	44.678	-0.2444					12	8	2	0	0	0	0.027866	1	4188	4188		40.573	7.057	1	84920	+		10923	20066	7478	7494	12385	12385					0.016716954037519827
EIATMIMGI	9	Unmodified	_EIATMIMGI_					0	0	0		ENSG00000125962|ENST00000473968|ARMCX5	ENSG00000125962|ENST00000473968|ARMCX5	ENSG00000125962|ENST00000473968|ARMCX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.29296875	2	489.753564	977.492575	-0.92468	-0.00045287	0.68106	0.00033355	-0.24362	-0.00011931	489.75423611412145	37.311	0.42857	37.092	36.962	37.39	-0.2195					14	10	2	0	0	0	0.023596	1	2988	2988		44.117	0	1	59211			10924	4165	7479	7495	12386	12386					0.0029283371362680555
EIATQKSRL	9	Unmodified	_EIATQKSRL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3035278320312	2	523.303655	1044.59276	0.47324	0.00024765	-0.96385	-0.00050438	-0.49061	-0.00025674	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.91321	1	10623	10623		31.53	1.0262	1	13836000			10925	6301	7480	7496	12387	12387					0.07224530363282611
EIAVKVIDT	9	Unmodified	_EIAVKVIDT_					0	0	0			REV__ELMO1|p.A5T|1|0.12|ENSG00000155849|chr7:37342678-37342678|C/T|missense_variant	REV__ELMO1|p.A5T|1|0.12|ENSG00000155849|chr7:37342678-37342678|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.8061218261719	2	494.289682	986.564812	-0.39313	-0.00019432	0.1339	6.6184E-05	-0.25924	-0.00012814	494.28956164099327	81.905	0.95448	81.931	81.619	82.574	0.025711					50	22	3	0	0	0	0.024397	1	10118	10118		39.253	5.0803	1	591660	+		10926	19745	7481	7497	12388	12388					0.07099207383191697
EIAVSLTKD	9	Unmodified	_EIAVSLTKD_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2780456542969	2	488.27149	974.528426	-0.086199	-4.2088E-05	1.1453	0.00055923	1.0591	0.00051714	488.271714805459	40.305	0.5506	40.08	39.891	40.442	-0.225					22	14	3	0	0	0	0.024436	1	3523	3523		30.504	13.139	1	315710	+		10927	21083	7482	7498	12389	12389					0.04014330486484141
EICCGDLQLD	10	Unmodified	_EICCGDLQLD_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7828979492188	2	554.736099	1107.45765	-0.54697	-0.00030343	4.0954	0.0022718	3.5484	0.0019684	554.7380907420302	82.774	0.64674	82.634	82.347	82.993	-0.14014					30	14	3	0	0	0	0.03519	1	9960	9960		35.152	0	1	239390			10928	4619	7483	7499	12390	12390					-0.0917845388501064
EICERKMAR	9	Unmodified	_EICERKMAR_					0	0	0		nc|ENSG00000279688|A6NL99|AQP7P3	nc|ENSG00000279688|A6NL99|AQP7P3	nc|ENSG00000279688|A6NL99|AQP7P3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2910766601562	2	568.289168	1134.56378	-2.0712	-0.001177	-3.4877	-0.001982	-5.5589	-0.0031591	568.2873760101614	60.043	0.4552	60.122	59.863	60.318	0.078884					22	11	3	0	0	0	0.024495	1	6791	6791		26.693	0	1	327590			10929	18803	7484	7500	12391	12391					0.001883464709862892
EICGPTSPKRL	11	Unmodified	_EICGPTSPKRL_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.8861999511719	3	400.885024	1199.63324	0.084969	3.4063E-05	3.6979	0.0014824	3.7829	0.0015165	400.8864471960518	54.981	1.3568	54.775	54.468	55.825	-0.20613					107	37	5	0	0	0	1.0075	1	5844	5844		31.068	0	1	9822100			10930	4803	7485	7501	12392	12392					0.04141128691412632
EICIALILAS	10	Unmodified	_EICIALILAS_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;ENST00000526574.1_1_11:68334490-68338573:+|nuORF	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.304931640625	2	523.301736	1044.58892	0.29693	0.00015538	3.2182	0.0016841	3.5151	0.0018395	523.3032989158403	89.717	0.56227	89.58	89.273	89.836	-0.13761					34	12	3	0	0	0	1.0508	1	10917	10917		39.253	5.0803	1	910160			10931	3020	7486	7502	12393	12393					0.06840724545213561
EICLLPLDY	9	Unmodified	_EICLLPLDY_					0	0	0		ENSG00000105825|ENST00000222543|TFPI2;ENST00000461482.1_1_7:93519395-93519990:-|nuORF	ENSG00000105825|ENST00000222543|TFPI2	ENSG00000105825|ENST00000222543|TFPI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.8267822265625	2	539.778093	1077.54163	-0.079697	-4.3019E-05	2.5996	0.0014032	2.5199	0.0013602	539.7795543837368	54.697	0.63497	54.491	54.159	54.794	-0.20613					25	16	2	0	0	0	0.024427	1	5861	5861		34.173	5.0025	1	491430			10932	2724	7487	7503	12394	12394					0.005964452742091453
EICQKVFW	8	Unmodified	_EICQKVFW_					0	0	0			REV__ENSG00000075884|ENST00000295095|ARHGAP15	REV__ENSG00000075884|ENST00000295095|ARHGAP15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.802490234375	2	526.76532	1051.51609	-0.27659	-0.0001457	3.3513	0.0017653	3.0747	0.0016196	526.7669026070137	57.92	0.80186	58.011	57.759	58.561	0.091217					48	21	3	0	0	0	0.027866	1	6432	6432		20.482	4.0087	1	2629800	+		10933	20559	7488	7504	12395	12395					-0.007609844575426905
EICRRLTNI	9	Unmodified	_EICRRLTNI_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.269287109375	2	559.310958	1116.60736	0.67949	0.00038004	0.46358	0.00025929	1.1431	0.00063933	559.3110170245634	71.041	0.73778	70.748	70.411	71.149	-0.29291					38	17	3	0	0	0	0.024288	1	8517	8517		36.447	0	1	1470900	+		10934	21417	7489	7505	12396	12396					0.053722792397593366
EICTLLRLL	9	Unmodified	_EICTLLRLL_					0	0	0			REV__nc|ENSG00000110075|Q5H9R7-3|PPP6R3	REV__nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3281860351562	2	537.323002	1072.63145	-1.1421	-0.00061369	3.3111	0.0017791	2.169	0.0011654	537.3234218713836	82.643	1.491	82.669	82.106	83.597	0.026329					141	34	6	0	0	0	0.69446	1	10243	10243		46.457	5.6786	1	1565300	+		10935	21836	7490	7506	12397	12397					0.09804119673435707
EIDFMLENL	9	Unmodified	_EIDFMLENL_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.3116455078125	2	562.270632	1122.52671	0.11489	6.4597E-05	3.0342	0.0017061	3.1491	0.0017707	562.2721821249146	88.405	1.5113	88.405	87.844	89.355	0					60	35	3	0	0	0	0.022832	1	11068	11068		82.241	10.363	1	298800			10936	1474	7491	7507	12398	12398					-0.029650465937720583
EIDITPFLL	9	Unmodified	_EIDITPFLL_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.S1932Rfs*57|1|0.11|ENSG00000198198|chr1:43435262-43435262|T/-|frameshift_variant;ENST00000470139.1_2_1:43893713-43894182:+|nuORF	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8018188476562	2	530.799883	1059.58521	-0.041967	-2.2276E-05	3.2131	0.0017055	3.1712	0.0016833	530.8014096275714	101.08	0.966	100.96	100.71	101.68	-0.12576					52	22	3	0	0	0	0.33245	1	12582	12582		71.296	2.811	1	1241600			10937	10106	7492	7508	12399	12399					0.0578037804300493
EIDKLKEDI	9	Unmodified	_EIDKLKEDI_					0	0	0		ENSG00000165813|ENST00000369287|CCDC186	ENSG00000165813|ENST00000369287|CCDC186	ENSG00000165813|ENST00000369287|CCDC186	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2815551757812	2	551.803154	1101.59175	-0.86698	-0.0004784	-0.48747	-0.00026899	-1.3544	-0.00074739	551.8015655911194	61.639	0.24944	61.461	61.287	61.536	-0.17781					8	5	2	0	0	0	0.024539	1	6906	6906		20.947	3.582	1	125720			10938	7471	7493	7509	12400	12400					0.04502271203705277
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.7744750976562	2	573.774928	1145.5353	0.033473	1.9206E-05	-0.13393	-7.6848E-05	-0.10046	-5.7642E-05	573.7747846853405	34.623	1.061	34.399	34.106	35.167	-0.22412					75	26	5	0	0	0	0.013333	3	2562	2552;2562;2576		176.41	94.106	1	3167500			10939	2401	7494	7510	12401;12402;12403	12402					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.774658203125	2	573.774928	1145.5353	-0.35854	-0.00020572	0.16285	9.3442E-05	-0.19569	-0.00011228	573.7749344045678	34.534	0.92496	34.327	34.043	34.968	-0.20696					73	22	5	0	0	0	0.03201	3	2562	2538;2547;2562		139.97	65.715	1	2924500			10940	2401	7494	7510	12404;12405;12406	12406					-0.031643566329421446
EIDKNDHLY	9	Unmodified	_EIDKNDHLY_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.7748413085938	2	573.774928	1145.5353	-0.71034	-0.00040757	0.50216	0.00028813	-0.20817	-0.00011944	573.7751297013555	34.53	0.83414	34.354	34.05	34.884	-0.17557					68	20	5	0	0	0	0.03849	3	2544	2520;2530;2544		134.81	60.556	1	3126500			10941	2401	7494	7510	12407;12408;12409	12409					-0.031643566329421446
EIDKRYVESQ	10	Unmodified	_EIDKRYVESQ_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.250244140625	3	422.882337	1265.62518	0.35471	0.00015	4.1731	0.0017647	4.5278	0.0019147	422.8839820414066	53.159	0.64902	53.032	52.753	53.402	-0.12705					42	16	4	0	0	0	0.03519	1	5588	5588		27.644	7.6134	1	640240			10942	4551	7495	7511	12410	12410					0.00299272975621534
EIDLKIGII	9	Unmodified	_EIDLKIGII_					0	0	0			REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2819519042969	2	507.3157	1012.61685	-0.07327	-3.7171E-05	0.67778	0.00034385	0.60451	0.00030668	507.3168610001443	104.84	0.29854	104.84	104.75	105.05	0.00096893					13	9	2	0	0	0	0.024381	1	13433	13433		21.96	0	1	23886	+		10943	33607	7496	7512	12411	12411					0.11104370796954299
EIDMTEEDP	9	Unmodified	_EIDMTEEDP_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-5|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-5|ABCA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8182983398438	2	539.715887	1077.41722	-0.20556	-0.00011094	-2.7084	-0.0014618	-2.9139	-0.0015727	539.7139653084523	74.692	0.21416	74.417	74.265	74.479	-0.27573					8	4	2	0	0	0	0.024541	1	8809	8809		11.511	0	1	109000	+		10944	24951	7497	7513	12412	12412					-0.1183909700375807
EIDPARPL	8	Unmodified	_EIDPARPL_					0	0	0			REV__ENST00000544200.5_1_12:6941015-6942715:+|nuORF	REV__ENST00000544200.5_1_12:6941015-6942715:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.22491455078125	2	455.753267	909.491981	-2.0904	-0.00095271	1.6978	0.00077376	-0.39265	-0.00017895	455.7540369858161	52.025	0.46997	51.756	51.511	51.981	-0.26903					19	12	2	0	0	0	0.027866	1	5383	5383		16.473	0	1	165940	+		10945	34808	7498	7514	12413	12413					0.03361498380422745
EIDPVLNLF	9	Unmodified	_EIDPVLNLF_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2982177734375	2	530.289682	1058.56481	-0.78119	-0.00041426	3.1842	0.0016885	2.403	0.0012743	530.2906975664108	30.485	0.28823	30.559	30.42	30.708	0.074316					10	6	2	0	0	0	0.02435	1	1895	1895		26.693	0	1	72524	+		10946	20189	7499	7515	12414	12414					0.03787207383174973
EIDTIKYIF	9	Unmodified	_EIDTIKYIF_					0	0	0		ENSG00000172139|ENST00000305815|SLC9C1;nc|ENSG00000172139|Q4G0N8-2|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.3109130859375	2	571.310615	1140.60668	0.24286	0.00013875	-0.74292	-0.00042444	-0.50005	-0.00028569	571.3101497180902	74.813	1.8282	74.537	74.132	75.96	-0.27573					144	44	5	0	0	0	0.33245	1	8803	8803		71.296	1.6681	1	37698000			10947	8244	7500	7516	12415	12415					0.041997630717105494
EIDVIVASL	9	Unmodified	_EIDVIVASL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MSMS	OPSCC_39_ClassI_Rep-2	2	479.7761535644531	2	479.776408	957.538263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.881	1	79.709	79.209	80.209	-0.17226								0	0	0	0.1457	1	9883	9883		82.305	11.009	1				10948	4290	7501	7517	12416	12416					0.057795184918632
EIDVLIFKKL	10	Unmodified	_EIDVLIFKKL_					0	0	0		ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	609.3773193359375	2	609.378832	1216.74311	-0.47495	-0.00028942	-1.6737	-0.0010199	-2.1486	-0.0013093	609.3776931658067	25.224	0.71981	25.054	24.737	25.457	-0.17078					48	16	4	0	0	0	1.0074	1	1177	1177		19.104	0	1	801760			10949	8583	7502	7518	12417	12417					0.14340877302220179
EIDVLIFKKL	10	Unmodified	_EIDVLIFKKL_					0	0	0		ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	609.3775024414062	2	609.378832	1216.74311	0.22339	0.00013613	-2.4358	-0.0014843	-2.2124	-0.0013482	609.3772721443714	25.264	0.71568	25.093	24.777	25.492	-0.17151					48	16	4	0	0	0	0.75651	1	1152	1152		34.173	0	1	867750			10950	8583	7502	7518	12418	12418					0.14340877302220179
EIDVLIFKKL	10	Unmodified	_EIDVLIFKKL_					0	0	0		ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.587646484375	3	406.588313	1216.74311	0.3256	0.00013238	-3.0295	-0.0012318	-2.7039	-0.0010994	406.5873231361823	25.27	2.8978	25.098	24.732	27.63	-0.17151					174	72	6	0	0	0	1.0236	1	1167	1167		42.864	3.6114	1	31222000			10951	8583	7502	7518	12419	12419					0.14340877302220179
EIDWERYNSPE	11	Unmodified	_EIDWERYNSPE_					0	0	0		ENST00000483060.1_1_1:67091531-67109432:+|nuORF;nc|ENSG00000118473|Q9BQI5-4|SGIP1;nc|ENSG00000118473|Q9BQI5-5|SGIP1;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1	ENST00000483060.1_1_1:67091531-67109432:+|nuORF	ENST00000483060.1_1_1:67091531-67109432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2840576171875	3	479.880884	1436.62082	-0.53142	-0.00025502	-0.18507	-8.8813E-05	-0.71649	-0.00034383	480.21653708094857	75.514	0.31601	75.514	75.343	75.659	0					10	8	2	0	0	0	0.024821	1	9292	9292		14.086	4.4399	1	116290			10952	3683	7503	7519	12420	12420					-0.08002236237962279
EIDWKAYM	8	Unmodified	_EIDWKAYM_					0	0	0		ACTL6A-ALG3|2|fusion;ACTL6A-ALG3|1|fusion;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	ACTL6A-ALG3|2|fusion	ACTL6A-ALG3|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.2711181640625	2	528.24696	1054.47937	-0.30928	-0.00016338	3.5728	0.0018873	3.2635	0.001724	528.2478914152048	47.249	0.45351	47.152	46.897	47.35	-0.096649					17	11	3	0	0	0	0.027866	1	4586	4586		38.806	19.446	1	256020			10953	20	7504	7520	12421	12421					-0.04569281074122955
EIDYTLCF	8	Unmodified	_EIDYTLCF_					0	0	0		nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.26397705078125	2	502.225694	1002.43683	-0.17297	-8.6872E-05	0.79703	0.00040029	0.62405	0.00031342	502.22472356243014	76.137	0.18819	75.879	75.71	75.898	-0.25866					5	4	2	0	0	0	0.027866	1	9018	9018		13.775	5.544	1	32401			10954	2186	7505	7521	12422	12422					-0.06428676202347106
EIEAQSPVL	9	Unmodified	_EIEAQSPVL_					0	0	0			REV__ENST00000560078.1_1_15:41102255-41105735:+|nuORF	REV__ENST00000560078.1_1_15:41102255-41105735:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2626037597656	2	493.263665	984.512776	0.1335	6.5851E-05	0.12085	5.9612E-05	0.25435	0.00012546	493.2636514537046	71.396	1.3579	71.134	70.646	72.004	-0.26199					73	32	5	0	0	0	0.20967	1	8348	8348		87.754	2.8388	1	2195600	+		10955	25975	7506	7522	12423	12423					0.01990043969431099
EIEARRLI	8	Unmodified	_EIEARRLI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.790771484375	2	500.300916	998.587279	-0.84152	-0.00042101	-1.9167	-0.00095893	-2.7582	-0.0013799	500.29948843419146	29.812	0.55521	29.64	29.533	30.088	-0.17258					20	12	2	0	0	0	0.027866	1	1841	1841		50.025	0	1	667150			10956	1335	7507	7523	12424	12424					0.08792851571479332
EIEARSKDL	9	Unmodified	_EIEARSKDL_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.810791015625	2	530.785296	1059.55604	-0.64529	-0.00034251	0.25779	0.00013683	-0.3875	-0.00020568	530.7856032148262	62.34	0.66158	62.101	61.482	62.144	-0.23926					23	17	2	0	0	0	0.023291	1	7129	7129		80.455	22.225	1	291270	+		10957	22285	7508	7524	12425	12425					0.028642337467317702
EIEARSKDL	9	Unmodified	_EIEARSKDL_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.785296	1059.55604	-0.36856	-0.00019563	2.8324	0.0015034	2.4638	0.0013078	530.7864575358866	62.455	0.35112	62.234	61.965	62.316	-0.22097	0.066388	0.0010637	NaN	80.455	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970480	+		10958	22285	7508	7524							0.028642337467317702
EIEAVPLSKP	10	Unmodified	_EIEAVPLSKP_					0	0	0			REV__nc|ENSG00000188042|P56559|ARL4C	REV__nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.8088989257812	2	541.808239	1081.60193	-1.1376	-0.00061635	0.28012	0.00015177	-0.85746	-0.00046458	541.8082200443848	29.22	1.5305	29.223	28.506	30.036	0.0031357					96	37	4	0	0	0	0.74632	1	1745	1745		64.207	14.766	1	2398100	+		10959	28003	7509	7525	12426	12426					0.06438878928952363
EIEEALVRRK	10	Unmodified	_EIEEALVRRK_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000393292.7_1_3:128848926-128853725:-|nuORF;ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.8985595703125	3	414.910338	1241.70918	0.051827	2.1504E-05	-2.8748	-0.0011928	-2.823	-0.0011713	415.24266933988804	25.191	0.40467	25.191	24.919	25.324	0					14	9	2	0	0	0	0.03519	1	1164	1164		74.165	7.2448	1	89982			10960	18754	7510	7526	12427	12427					0.09799848863167426
EIEGIFHAT	9	Unmodified	_EIEGIFHAT_					0	0	0		nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.3021240234375	2	508.756007	1015.49746	0.57408	0.00029207	4.2188	0.0021463	4.7928	0.0024384	508.75681397632167	54.451	0.63219	54.245	54.016	54.648	-0.20613					35	16	4	0	0	0	0.024381	1	5827	5827		29.15	0	1	291910			10961	6470	7511	7527	12428	12428					-0.00966822827751912
EIEIPPTKAP	10	Unmodified	_EIEIPPTKAP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.823974609375	2	547.808239	1093.60193	-0.32984	-0.00018069	0.37314	0.00020441	0.043303	2.3722E-05	547.8083585139963	41.593	0.4536	41.458	41.137	41.591	-0.13553					21	11	3	0	0	0	0.03519	1	3655	3655		31.53	0	1	160430			10962	6479	7512	7528	12429	12429					0.05886878928936312
EIEKFVLNA	9	Unmodified	_EIEKFVLNA_					0	0	0			REV__nc|ENSG00000116171|P22307-7|SCP2	REV__nc|ENSG00000116171|P22307-7|SCP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8094482421875	2	531.795132	1061.57571	-0.87506	-0.00046536	1.9232	0.0010228	1.0482	0.00055741	531.7966625384493	47.964	0.15967	47.811	47.764	47.924	-0.15301					6	4	2	0	0	0	0.024427	1	4826	4826		34.173	0	1	277410	+		10963	22263	7513	7529	12430	12430					0.04738609757487211
EIELLLASCV	10	Unmodified	_EIELLLASCV_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.31640625	2	545.29665	1088.57875	0.030042	1.6382E-05	-4.4906	-0.0024487	-4.4606	-0.0024323	545.2939021125057	88.735	0.38239	88.707	88.561	88.944	-0.027664					11	8	2	0	0	0	0.03519	1	11169	11169		34.173	6.2903	1	33826	+		10964	29199	7514	7530	12431	12431					0.03800116819957111
EIELLLASCV	10	Unmodified	_EIELLLASCV_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	545.29665	1088.57875	-0.49069	-0.00026757	2.6083	0.0014223	2.1176	0.0011547	545.2975862106662	87.387	0.25202	87.25	87.163	87.415	-0.13734					7	5	2	0	0	0	0.03519	1	10614	10614		35.618	5.1146	1	22539	+		10965	29199	7514	7530	12432	12432					0.03800116819957111
EIELYSEP	8	Unmodified	_EIELYSEP_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.29296875	2	490.234573	978.454593	-0.8566	-0.00041993	1.8962	0.00092961	1.0396	0.00050967	490.235043798632	37.786	0.68531	37.567	37.114	37.799	-0.2195					32	17	3	0	0	0	0.027866	1	2988	2988		50.025	5.9077	1	329180			10966	8905	7515	7531	12433	12433					-0.035496376758374026
EIENLSQVD	9	Unmodified	_EIENLSQVD_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.80078125	2	523.753661	1045.49277	-0.98015	-0.00051336	1.432	0.00075	0.45181	0.00023664	523.7543863181471	48.715	0.38183	48.715	48.482	48.864	0					18	10	2	0	0	0	0.024025	1	4995	4995		52.937	0	1	239120			10967	3425	7516	7532	12434	12434					-0.028157517611589356
EIEPLMDQR	9	Unmodified	_EIEPLMDQR_					0	0	0			REV__ENSG00000101542|ENST00000262717|CDH20	REV__ENSG00000101542|ENST00000262717|CDH20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8068237304688	2	565.779156	1129.54376	-0.12844	-7.2668E-05	-2.9475	-0.0016677	-3.076	-0.0017403	565.7772354771336	32.713	0.12147	32.476	32.417	32.539	-0.23666					4	2	2	0	0	0	0.024374	1	2270	2270		40.778	13.982	1	19378	+		10968	21240	7517	7533	12435	12435					-0.015831259879860227
EIEPVSAVW	9	Unmodified	_EIEPVSAVW_					0	0	0		ENSG00000179059|ENST00000326866|ZFP42	ENSG00000179059|ENST00000326866|ZFP42	ENSG00000179059|ENST00000326866|ZFP42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3004150390625	2	515.266207	1028.51786	-0.30885	-0.00015914	-3.7062	-0.0019097	-4.0151	-0.0020688	515.2642224390836	62.135	0.5072	61.921	61.737	62.244	-0.21375					33	12	3	0	0	0	0.022484	1	7026	7026		71.296	7.9894	1	1035800			10969	8867	7518	7534	12436	12436					0.004743478320506256
EIEPVSAVW	9	Unmodified	_EIEPVSAVW_					0	0	0		ENSG00000179059|ENST00000326866|ZFP42	ENSG00000179059|ENST00000326866|ZFP42	ENSG00000179059|ENST00000326866|ZFP42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2979125976562	2	515.266207	1028.51786	-0.81521	-0.00042005	-3.1296	-0.0016126	-3.9448	-0.0020326	515.2644995656356	62.132	0.53726	61.954	61.728	62.265	-0.17782					31	13	3	0	0	0	0.022924	1	7016	7016		97.473	40.752	1	999270			10970	8867	7518	7534	12437	12437					0.004743478320506256
EIERTIKN	8	Unmodified	_EIERTIKN_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2879638671875	2	501.782556	1001.55056	0.80558	0.00040423	-4.1041	-0.0020594	-3.2986	-0.0016552	501.7803900017209	70.77	1.0839	70.477	70.263	71.347	-0.29292					56	20	5	0	0	0	0.027866	1	8645	8645		44.117	3.3386	1	1138100			10971	3841	7519	7535	12438	12438					0.04984554954910436
EIERVEHRA	9	Unmodified	_EIERVEHRA_					0	0	0			REV__nc|ENSG00000153936|Q7LGA3-3|HS2ST1	REV__nc|ENSG00000153936|Q7LGA3-3|HS2ST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.8264770507812	2	569.801811	1137.58907	-0.075023	-4.2748E-05	-3.4785	-0.0019821	-3.5535	-0.0020248	569.7997042521639	49.797	0.95197	49.646	49.368	50.32	-0.1512					72	26	3	0	0	0	0.024466	1	5138	5138		18.262	0	1	3210200	+		10972	24920	7520	7536	12439	12439					0.02577860589417469
EIESKHRLA	9	Unmodified	_EIESKHRLA_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	MSMS	OPSCC_40_ClassI_Rep-2	5	541.8005981445312	2	541.80128	1081.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.732	1	17.525	17.025	18.025	-0.20669								0	0	0	0.66481	1	210	210		27.882	0	1		+		10973	22664	7521	7537	12440	12440					0.050476462205324424
EIETATRSI	9	Unmodified	_EIETATRSI_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.8035583496094	2	510.272021	1018.52949	0.10483	5.3489E-05	2.6667	0.0013607	2.7715	0.0014142	510.2742120734373	86.427	0.94508	86.24	85.991	86.936	-0.18696					36	21	3	0	0	0	0.024418	1	10478	10478		30.318	0	1	97435			10974	5217	7522	7538	12441	12441					0.020965448553852184
EIEYFFEEN	9	Unmodified	_EIEYFFEEN_					0	0	0			REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5873718261719	3	407.176638	1218.50808	-0.28017	-0.00011408	-3.6821	-0.0014993	-3.9623	-0.0016133	407.17499252629113	25.918	0.55229	25.682	25.425	25.977	-0.23603					42	13	4	0	0	0	0.024389	1	1261	1261		42.864	8.9426	1	704190	+		10975	24705	7523	7539	12442	12442					-0.09242884963987308
EIEYFFEEN	9	Unmodified	_EIEYFFEEN_					0	0	0			REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58746337890625	3	407.176638	1218.50808	0.34231	0.00013938	-4.3361	-0.0017656	-3.9938	-0.0016262	407.17475957762014	25.719	0.67871	25.549	25.247	25.925	-0.17078					37	17	3	0	0	0	0.024418	1	1210	1210		37.812	6.2817	1	781720	+		10976	24705	7523	7539	12443	12443					-0.09242884963987308
EIFDALESL	9	Unmodified	_EIFDALESL_					0	0	0		nc|ENSG00000130023|Q5T6L9-3|ERMARD;nc|ENSG00000130023|Q5T6L9-2|ERMARD;ENSG00000130023|ENST00000366773|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3133544921875	2	518.763497	1035.51244	-0.35503	-0.00018418	-0.093114	-4.8304E-05	-0.44815	-0.00023248	518.7634624686114	71.021	0.7467	71.031	70.725	71.472	0.010735					31	18	2	0	0	0	0.024457	1	8490	8490		29.15	0	1	911340			10977	18264	7524	7540	12444	12444					-0.003893757504329187
EIFIKDANL	9	Unmodified	_EIFIKDANL_					0	0	0		SERPINI1|p.T323K|1|0.15|ENSG00000163536|chr3:167807330-167807330|C/A|missense_variant;ENST00000488374.5_1_3:167517863-167543108:+|nuORF;ENSG00000163536|ENST00000446050|SERPINI1	SERPINI1|p.T323K|1|0.15|ENSG00000163536|chr3:167807330-167807330|C/A|missense_variant	SERPINI1|p.T323K|1|0.15|ENSG00000163536|chr3:167807330-167807330|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8170166015625	2	531.795132	1061.57571	-0.030801	-1.638E-05	-0.19386	-0.00010309	-0.22466	-0.00011947	531.7950183119134	87.465	0.69627	87.429	87.11	87.806	-0.035355					32	16	3	0	0	0	0.023454	1	10973	10973		71.877	0	1	445740			10978	7103	7525	7541	12445	12445					0.04738609757464474
EIFILDVSL	9	Unmodified	_EIFILDVSL_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2973022460938	2	524.799883	1047.58521	0.068941	3.618E-05	0.38794	0.00020359	0.45688	0.00023977	524.7998240247408	81.376	0.96223	81.147	80.857	81.819	-0.22891					56	22	4	0	0	0	0.024323	1	9748	9748		35.618	0	1	465670	+		10979	37064;31322	7526	7542	12446	12446					0.06332378042998243
EIFKSVLSD	9	Unmodified	_EIFKSVLSD_					0	0	0			REV__ENSG00000120251|ENST00000264426|GRIA2	REV__ENSG00000120251|ENST00000264426|GRIA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2974243164062	2	519.279315	1036.54408	-0.16224	-8.4248E-05	-3.3788	-0.0017545	-3.541	-0.0018388	519.2775507069158	103.28	0.67416	103.29	103.05	103.73	0.0054169					19	16	2	0	0	0	0.024447	1	13192	13192		32.812	0	1	428960	+		10980	22518	7527	7543	12447	12447					0.027266170035318282
EIFLITLV	8	Unmodified	_EIFLITLV_					0	0	0		nc|ENSG00000204544|Q5SSG8-3|MUC21;ENSG00000204544|ENST00000376296|MUC21;nc|ENSG00000204544|Q5SSG8-2|MUC21	nc|ENSG00000204544|Q5SSG8-3|MUC21	nc|ENSG00000204544|Q5SSG8-3|MUC21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.7647399902344	2	474.294236	946.57392	-0.31291	-0.00014841	-4.3591	-0.0020675	-4.672	-0.0022159	474.2918521960584	91.643	0.56228	91.52	91.328	91.89	-0.12341					13	12	2	0	0	0	0.027866	1	11293	11293		19.36	0	1	39105			10981	10354	7528	7544	12448	12448					0.09849600739528341
EIFMAIAKKL	10	Unmodified	_EIFMAIAKKL_					0	0	0		ENST00000473608.1_1_3:20017064-20025312:+|nuORF;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	ENST00000473608.1_1_3:20017064-20025312:+|nuORF	ENST00000473608.1_1_3:20017064-20025312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3477783203125	2	582.346477	1162.6784	-0.64676	-0.00037664	3.5379	0.0020603	2.8911	0.0016836	582.3485609557453	18.591	0.73649	18.46	18.154	18.891	-0.13147					32	14	3	0	0	0	1.0992	1	293	293		32.812	1.2826	1	77672			10982	2929	7529	7545	12449	12449					0.1035697922457075
EIFRKVRF	8	Unmodified	_EIFRKVRF_					0	0	0		nc|ENSG00000137752|P29466-5|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-2|CASP1;ENSG00000137752|ENST00000533400|CASP1	nc|ENSG00000137752|P29466-5|CASP1	nc|ENSG00000137752|P29466-5|CASP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2930908203125	2	547.827101	1093.63965	0.077473	4.2442E-05	-0.73005	-0.00039994	-0.65257	-0.0003575	547.8265942575936	47.372	0.59078	47.102	46.837	47.427	-0.26939					36	15	3	0	0	0	0.027866	1	4663	4663		33.516	16.151	1	336570			10983	5148	7530	7546	12450	12450					0.09657434705104606
EIFRKVRF	8	Unmodified	_EIFRKVRF_					0	0	0		nc|ENSG00000137752|P29466-5|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-2|CASP1;ENSG00000137752|ENST00000533400|CASP1	nc|ENSG00000137752|P29466-5|CASP1	nc|ENSG00000137752|P29466-5|CASP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.827101	1093.63965	-0.24147	-0.00013229	-0.61604	-0.00033749	-0.85752	-0.00046977	547.8264710210864	46.997	0.47906	46.9	46.682	47.161	-0.096649	-0.071011	-0.00010448	NaN	50.025	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255100			10984	5148	7530	7546							0.09657434705104606
EIFRKVRF	8	Unmodified	_EIFRKVRF_					0	0	0		nc|ENSG00000137752|P29466-5|CASP1;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-3|CASP1;nc|ENSG00000137752|P29466-2|CASP1;ENSG00000137752|ENST00000533400|CASP1	nc|ENSG00000137752|P29466-5|CASP1	nc|ENSG00000137752|P29466-5|CASP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	547.827101	1093.63965	-0.51032	-0.00027957	-0.1829	-0.0001002	-0.69323	-0.00037977	547.8268624415645	47.105	0.70476	46.911	46.712	47.416	-0.19387	-0.060333	0.00037009	NaN	50.025	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484240			10985	5148	7530	7546							0.09657434705104606
EIFSLEMSK	9	Unmodified	_EIFSLEMSK_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.8085327148438	2	542.273175	1082.5318	0.26669	0.00014462	-0.62173	-0.00033715	-0.35505	-0.00019253	542.271683536501	55.325	0.41968	55.325	55.116	55.536	0					17	11	2	0	0	0	0.024523	1	6100	6100		15.642	0	1	201580			10986	9207	7531	7547	12451	12451					-0.006167427311766005
EIFTDEEEE	9	Unmodified	_EIFTDEEEE_					0	0	0			REV__nc|ENSG00000212643|Q15695|ZRSR2P1	REV__nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.310302734375	2	570.732591	1139.45063	0.55621	0.00031744	-1.0095	-0.00057618	-0.45334	-0.00025874	570.7309643795944	74.724	0.37201	74.541	74.267	74.639	-0.18278					10	8	2	0	0	0	0.024205	1	8798	8798		63.306	5.495	1	65464	+		10987	26343	7532	7548	12452	12452					-0.11351771960221413
EIFVQQLK	8	Unmodified	_EIFVQQLK_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.74517822265625	2	502.792392	1003.57023	-0.83472	-0.00041969	-0.25875	-0.0001301	-1.0935	-0.00054979	502.79241141018497	34.552	0.40313	34.377	34.168	34.571	-0.17557					11	9	2	0	0	0	0.027866	1	2562	2562		38.806	0	1	48391	+		10988	26069	7533	7549	12453	12453					0.06858930965677246
EIFYSDLPA	9	Unmodified	_EIFYSDLPA_					0	0	0		ENST00000559530.1_1_15:32059604-32059847:-|nuORF	ENST00000559530.1_1_15:32059604-32059847:-|nuORF	ENST00000559530.1_1_15:32059604-32059847:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7484130859375	2	527.758215	1053.50188	0.46864	0.00024733	-3.3532	-0.0017697	-2.8846	-0.0015224	528.2567725110819	85.485	0.46448	85.347	85.029	85.493	-0.13753					15	10	2	0	0	0	0.024487	1	10311	10311		24.203	1.1603	1	31784			10989	16783	7534	7550	12454	12454					-0.022733584048410194
EIGADGIAVI	10	Unmodified	_EIGADGIAVI_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL;ENST00000463899.5_1_1:182781291-182795122:+|nuORF;nc|ENSG00000135838|Q9BXD5-2|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.27740478515625	2	479.266207	956.517862	0.02687	1.2878E-05	-1.9129	-0.00091678	-1.886	-0.0009039	479.2653072151995	83.129	0.21386	82.99	82.867	83.081	-0.1386					10	4	3	0	0	0	0.03519	1	10002	10002		26.693	2.1737	1	90299			10990	4941	7535	7551	12455	12455					0.03786347832055981
EIGATVYPDA	10	Unmodified	_EIGATVYPDA_					0	0	0		ENST00000547237.1_1_14:25900674-25900779:-|nuORF	ENST00000547237.1_1_14:25900674-25900779:-|nuORF	ENST00000547237.1_1_14:25900674-25900779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7815551757812	2	518.253297	1034.49204	-0.59554	-0.00030864	3.3955	0.0017597	2.7999	0.0014511	518.2535543081208	79.154	0.74774	79.154	78.783	79.53	0					23	17	2	0	0	0	0.03519	1	9791	9791		54.776	7.119	1	139600			10991	16525	7536	7552	12456	12456					-0.023825464102401384
EIGENELPE	9	Unmodified	_EIGENELPE_					0	0	0			REV__ENST00000523897.5_1_8:62496079-62555960:-|nuORF	REV__ENST00000523897.5_1_8:62496079-62555960:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.303955078125	2	515.240386	1028.46622	-0.63071	-0.00032497	2.3379	0.0012046	1.7072	0.0008796	515.2416452093723	29.607	0.95982	29.61	29.24	30.2	0.0031357					32	23	2	0	0	0	0.024397	1	1845	1845		24.519	0	1	329510	+		10992	28415	7537	7553	12457	12457					-0.046874406525148515
EIGEVQKST	9	Unmodified	_EIGEVQKST_					0	0	0			REV__ENSG00000172262|ENST00000682664|ZNF131	REV__ENSG00000172262|ENST00000682664|ZNF131	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.78271484375	2	495.758746	989.50294	0.24336	0.00012065	0.34991	0.00017347	0.59327	0.00029412	495.7579058437018	32.934	0.64974	32.737	32.331	32.98	-0.19705					22	15	2	0	0	0	0.024313	1	2305	2305		42.864	1.4377	1	59656	+		10993	26653	7538	7554	12458	12458					0.007768559640567219
EIGISRFLI	9	Unmodified	_EIGISRFLI_					0	0	0		ENST00000268251.12_1_16:8876558-8876786:+|nuORF	ENST00000268251.12_1_16:8876558-8876786:+|nuORF	ENST00000268251.12_1_16:8876558-8876786:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.266845703125	2	524.313492	1046.61243	-0.20872	-0.00010944	0.44566	0.00023366	0.23694	0.00012423	524.313780409044	52.806	0.63394	52.679	52.432	53.066	-0.12705					36	15	3	0	0	0	0.024495	1	5495	5495		26.693	3.6504	1	502080			10994	11628	7539	7555	12459	12459					0.09098906374060789
EIGKKREL	8	Unmodified	_EIGKKREL_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7959899902344	2	486.795466	971.57638	-0.077956	-3.7949E-05	0.22402	0.00010905	0.14607	7.1105E-05	486.79543299301986	20.009	0.8241	19.841	19.62	20.444	-0.16774					29	16	3	0	0	0	0.67154	1	494	494		69.628	8.6557	1	720580			10995	2558	7540	7556	12460	12460					0.08945449197187827
EIGKLRPREA	10	Unmodified	_EIGKLRPREA_					0	0	0		ENST00000449707.5_1_2:219523523-219524103:-|nuORF	ENST00000449707.5_1_2:219523523-219524103:-|nuORF	ENST00000449707.5_1_2:219523523-219524103:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.78515625	2	584.843479	1167.67241	-1.5192	-0.0008885	2.6046	0.0015233	1.0854	0.00063477	584.8449991710248	52.617	0.43847	52.617	52.351	52.789	0					23	10	3	0	0	0	0.03519	1	5619	5619		41.427	8.6142	1	465910			10996	14503	7541	7557	12461	12461					0.09527597037254054
EIGLGTPPQN	10	Unmodified	_EIGLGTPPQN_					0	0	0		ENST00000534789.5_1_19:50838228-50848012:-|nuORF;ENST00000534096.5_1_19:50838046-50848012:-|nuORF;ENSG00000131400|ENST00000253719|NAPSA	ENST00000534789.5_1_19:50838228-50848012:-|nuORF	ENST00000534789.5_1_19:50838228-50848012:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.26904296875	2	513.266739	1024.51892	-0.51486	-0.00026426	2.9979	0.0015387	2.483	0.0012745	513.268819809957	79.468	1.6715	79.468	79.035	80.707	0					86	39	4	0	0	0	0.62431	1	9884	9884		74.255	5.4682	1	6158900			10997	4521	7542	7558	12462	12462					0.007645622009476938
EIGLLISVQ	9	Unmodified	_EIGLLISVQ_					0	0	0			REV__ENSG00000189337|ENST00000376030|KAZN	REV__ENSG00000189337|ENST00000376030|KAZN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2820129394531	2	486.292225	970.569897	-1.3021	-0.0006332	1.7194	0.00083614	0.41734	0.00020295	486.2927397512519	85.845	0.92666	85.869	85.492	86.419	0.023666					44	21	3	0	0	0	0.024436	1	10709	10709		30.504	6.3009	1	363550	+		10998	28113	7543	7559	12463	12463					0.08343511245823265
EIGQGVGIRAD	11	Unmodified	_EIGQGVGIRAD_					0	0	0		ENST00000564835.1_1_16:67213303-67213837:-|nuORF	ENST00000564835.1_1_16:67213303-67213837:-|nuORF	ENST00000564835.1_1_16:67213303-67213837:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.7980346679688	2	557.796195	1113.57784	0.35901	0.00020025	2.8272	0.001577	3.1862	0.0017773	557.7977399723883	82.037	1.2861	81.808	81.271	82.557	-0.22891					75	29	4	0	0	0	0.47044	1	9867	9867		78.264	5.3845	1	2078200			10999	16908	7544	7560	12464	12464					0.02559038495292043
EIGSHFVG	8	Unmodified	_EIGSHFVG_					0	0	0			REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.58221435546875	2	423.211235	844.407917	0.0013798	5.8397E-07	-1.1224	-0.000475	-1.121	-0.00047441	423.2107171500245	95.242	1.1723	95.105	94.68	95.853	-0.13689					43	26	2	0	0	0	0.027866	1	11846	11846		20.482	11.66	1	89681	+		11000	22600	7545	7561	12465	12465					-0.020510327164629416
EIGSHFVG	8	Unmodified	_EIGSHFVG_					0	0	0			REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	423.211235	844.407917	-0.26114	-0.00011052	-0.69887	-0.00029577	-0.96002	-0.00040629	423.21089492896624	94.68	0.97385	94.68	94.205	95.179	0	-0.12848	0.00019428	NaN	20.482	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167930	+		11001	22600	7545	7561							-0.020510327164629416
EIGSHFVG	8	Unmodified	_EIGSHFVG_					0	0	0			REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	423.211235	844.407917	-0.089309	-3.7797E-05	-0.96377	-0.00040788	-1.0531	-0.00044568	423.2107475454621	94.724	1.1149	94.724	94.228	95.343	-0.00022888	-0.084613	-2.9943E-05	NaN	20.482	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149140	+		11002	22600	7545	7561							-0.020510327164629416
EIGSHFVG	8	Unmodified	_EIGSHFVG_					0	0	0			REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	423.211235	844.407917	0.020502	8.6765E-06	-1.0957	-0.00046373	-1.0752	-0.00045505	423.21068631118203	94.722	1.0624	94.726	94.207	95.269	0.0041199	-0.082959	-0.00014164	NaN	20.482	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157110	+		11003	22600	7545	7561							-0.020510327164629416
EIGTCSYINY	10	Unmodified	_EIGTCSYINY_					0	0	0		NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;ENST00000478884.5_1_2:203881095-203927086:+|nuORF	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.2907104492188	2	581.757889	1161.50123	-0.98738	-0.00057441	-0.85098	-0.00049506	-1.8384	-0.0010695	581.7572305188004	65.563	0.57701	65.312	65.189	65.766	-0.25112					33	13	4	0	0	0	0.03519	1	7464	7464		71.877	22.436	1	1401300			11004	5738	7546	7562	12466	12466					-0.0730652111622021
EIGVTHHLISV	11	Unmodified	_EIGVTHHLISV_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.2691040039062	2	602.837862	1203.66117	0.42014	0.00025328	-0.53558	-0.00032287	-0.11544	-6.959E-05	602.8372504626883	70.956	0.43523	70.742	70.52	70.956	-0.21424					18	9	3	0	0	0	0.024765	1	8263	8263		41.427	8.6761	1	254740	+		11005	24520	7547	7563	12467	12467					0.06748774943139324
EIGVTHHLISV	11	Unmodified	_EIGVTHHLISV_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	602.837862	1203.66117	-0.23313	-0.00014054	-2.8198	-0.0016999	-3.0529	-0.0018404	602.8376565012588	71.148	0.48782	70.876	70.571	71.059	-0.27185	0.072699	-0.0022703	NaN	41.427	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189000	+		11006	24520	7547	7563							0.06748774943139324
EIGVTHHLISV	11	Unmodified	_EIGVTHHLISV_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	602.837862	1203.66117	-0.44901	-0.00027068	-1.059	-0.00063842	-1.508	-0.0009091	602.837848172476	71.05	0.47453	70.792	70.564	71.038	-0.25713	-0.011246	-0.00014738	NaN	41.427	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254190	+		11007	24520	7547	7563							0.06748774943139324
EIGWVPGL	8	Unmodified	_EIGWVPGL_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|29|2|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|29|2|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|29|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7806396484375	2	435.739628	869.464704	0.42198	0.00018387	-3.9691	-0.0017295	-3.5472	-0.0015456	435.7375499992111	40.674	0.56788	40.674	40.448	41.016	0					34	15	3	0	0	0	0.027866	1	3584	3584		37.028	10.232	1	813870			11008	38026	7548	7564	12468	12468					0.024750148400471517
EIGWVPGL	8	Unmodified	_EIGWVPGL_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|29|2|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|29|2|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|29|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.78021240234375	2	435.739628	869.464704	-0.68197	-0.00029716	-3.3505	-0.0014599	-4.0325	-0.0017571	435.7380528975375	40.972	0.78532	40.741	40.45	41.235	-0.23029					45	20	3	0	0	0	0.027866	1	3599	3599		37.028	0	1	2195100			11009	38026	7548	7564	12469	12469					0.024750148400471517
EIGYSINKL	9	Unmodified	_EIGYSINKL_					0	0	0			REV__nc|ENSG00000196115|Q6NVV9-5|ADAM5	REV__nc|ENSG00000196115|Q6NVV9-5|ADAM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.7792358398438	2	518.787307	1035.56006	0.47664	0.00024728	-0.53258	-0.0002763	-0.055939	-2.902E-05	518.7870647562902	85.652	1.0707	85.515	85.197	86.268	-0.13753					54	23	3	0	0	0	0.024313	1	10466	10466		42.864	18.345	1	551050	+		11010	37047	7549	7565	12470	12470					0.043703232404368464
EIHAGGLNL	9	Unmodified	_EIHAGGLNL_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2868957519531	2	462.250892	922.48723	0.73413	0.00033935	0.19392	8.9641E-05	0.92806	0.00042899	462.2511523137898	52.575	0.18408	52.667	52.565	52.749	0.091938					6	4	2	0	0	0	0.024436	1	5566	5566		30.504	0	1	88644			11011	8042	7550	7566	12471	12471					0.022886142376592034
EIHIQIGQFVL	11	Unmodified	_EIHIQIGQFVL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.7323303222656	3	432.915201	1295.72377	-0.40204	-0.00017405	0.13482	5.8364E-05	-0.26723	-0.00011569	433.24923374454346	33.386	0.58478	33.393	33.255	33.84	0.0066261					26	15	2	0	0	0	0.024731	1	2417	2417		24.232	0	1	42575			11012	1801	7551	7567	12472	12472					0.08773921011311359
EIHQIAQVPV	10	Unmodified	_EIHQIAQVPV_					0	0	0			REV__ENST00000575672.1_1_16:4308058-4308328:-|nuORF	REV__ENST00000575672.1_1_16:4308058-4308328:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.754150390625	2	567.319306	1132.62406	0.6788	0.0003851	-0.53739	-0.00030487	0.14141	8.0222E-05	567.3185539595763	51.041	0.7952	50.86	50.426	51.222	-0.18071					60	20	4	0	0	0	0.03519	1	5155	5155		36.447	10.873	1	912660	+		11013	35463	7552	7568	12473	12473					0.06305103397380662
EIICKRLR	8	Unmodified	_EIICKRLR_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7613525390625	2	515.813136	1029.61172	-1.0637	-0.00054865	-0.41188	-0.00021245	-1.4755	-0.0007611	515.8129534294794	35.162	0.33384	35.14	35.013	35.347	-0.021763					10	8	2	0	0	0	0.027866	1	2662	2662		11.511	0	1	42980			11014	3837	7553	7569	12474	12474					0.09809788453321744
EIIEIISAVC	10	Unmodified	_EIIEIISAVC_					0	0	0			REV__CON__P21578	REV__CON__P21578	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.31689453125	2	545.29665	1088.57875	-0.35098	-0.00019139	0.37104	0.00020233	0.020056	1.0937E-05	545.296870955048	88.943	0.4249	88.959	88.667	89.092	0.015907					12	9	2	0	0	0	0.03519	1	11110	11110		44.117	0	1	94484	+	+	11015	19558	7554	7570	12475	12475					0.038001168199798485
EIIEIISAVC	10	Unmodified	_EIIEIISAVC_					0	0	0			REV__CON__P21578	REV__CON__P21578	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.31689453125	2	545.29665	1088.57875	-0.22704	-0.0001238	1.319	0.00071924	1.092	0.00059544	545.2967962174297	88.578	0.38871	88.594	88.364	88.753	0.016403					11	8	2	0	0	0	0.03519	1	11110	11110		44.117	0	1	73064	+	+	11016	19558	7554	7570	12476	12476					0.038001168199798485
EIIERDGSI	9	Unmodified	_EIIERDGSI_					0	0	0		ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2708740234375	2	516.272021	1030.52949	-0.44993	-0.00023229	-3.1568	-0.0016298	-3.6068	-0.0018621	516.2706563454648	51.258	1.4526	51.109	50.256	51.709	-0.14916					92	41	4	0	0	0	0.32811	1	5410	5410		71.877	3.3928	1	7150600			11017	7546	7555	7571	12477	12477					0.01544544855391905
EIIERDGSI	9	Unmodified	_EIIERDGSI_					0	0	0		ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2705688476562	2	516.272021	1030.52949	-1.236	-0.00063809	-3.249	-0.0016774	-4.485	-0.0023155	516.2696016634007	50.955	1.5503	51.042	50.06	51.61	0.087006					106	44	5	0	0	0	0.29158	1	5314	5314		76.774	5.4784	1	7243800			11018	7546	7555	7571	12478	12478					0.01544544855391905
EIIGLIPTV	9	Unmodified	_EIIGLIPTV_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.7974853515625	2	477.797143	953.579734	0.73932	0.00035325	-0.22918	-0.0001095	0.51014	0.00024375	477.7968431092399	96.212	1.509	96.089	95.465	96.974	-0.12305					73	34	4	0	0	0	0.92825	1	11899	11899		30.504	1.3541	1	760830			11019	9658	7556	7572	12479	12479					0.10108699251190956
EIIGQCQP	8	Carbamidomethyl (C)	_EIIGQC(Carbamidomethyl (C))QP_	EIIGQC(1)QP		EIIGQC(66)QP		0	1	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;EYS|p.N404Kfs*3|1|0.34|ENSG00000188107|chr6:65384473-65384474|-/T|frameshift_variant;nc|ENSG00000188107|Q5T1H1-2|EYS;nc|ENSG00000188107|Q5T1H1-4|EYS	ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1-4|EYS	ENSG00000188107|ENST00000503581|EYS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7538757324219	2	472.728935	943.443317	-0.0047403	-2.2409E-06	0.87263	0.00041252	0.86789	0.00041028	472.72916465250523	32.228	0.42677	32.24	32.023	32.45	0.011799					17	10	2	0	0	0	0.027866	1	2206	2206		65.803	25.025	1	198680			11020	9692;18606	7557	7573	12480	12480	129				-0.03066738250970502
EIIGQLDYYL	10	Unmodified	_EIIGQLDYYL_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.55029296875	3	409.548295	1225.62306	-0.037538	-1.5374E-05	3.9477	0.0016168	3.9102	0.0016014	409.54989992128066	53.207	1.8381	53.06	52.607	54.445	-0.14723					125	50	4	0	0	0	1.0344	1	5714	5714		41.427	2.673	1	8919000			11021	2506	7558	7574	12481	12481					0.019268442378233885
EIIGQLDYYL	10	Unmodified	_EIIGQLDYYL_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.55010986328125	3	409.548295	1225.62306	0.85681	0.00035091	2.9551	0.0012103	3.8119	0.0015612	409.54949090781156	52.989	2.3405	53.085	52.606	54.946	0.095669					131	65	4	0	0	0	1.0728	1	5644	5644		36.318	1.1394	1	9425400			11022	2506	7558	7574	12482	12482					0.019268442378233885
EIIGTLQLVL	10	Unmodified	_EIIGTLQLVL_					0	0	0		nc|ENSG00000240583|P29972-3|AQP1;nc|ENSG00000240583|P29972-4|AQP1;nc|ENSG00000240583|P29972-2|AQP1;ENSG00000240583|ENST00000311813|AQP1	nc|ENSG00000240583|P29972-3|AQP1	nc|ENSG00000240583|P29972-3|AQP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2620239257812	2	549.842082	1097.66961	-0.80237	-0.00044118	-0.31862	-0.00017519	-1.121	-0.00061636	549.8423871860873	91.369	0.29442	91.357	91.238	91.533	-0.012383					9	6	2	0	0	0	0.03519	1	11555	11555		31.53	4.4825	1	61233			11023	18753	7559	7575	12483	12483					0.12468328859768008
EIIKKPAQN	9	Unmodified	_EIIKKPAQN_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3-1|USP25	REV__nc|ENSG00000155313|Q9UHP3-1|USP25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.8104248046875	2	520.808574	1039.60259	-0.020342	-1.0594E-05	3.5265	0.0018366	3.5061	0.001826	520.810176983407	92.311	1.4352	92.32	91.959	93.394	0.0094147					105	34	4	0	0	0	0.48817	1	11666	11666		60.118	6.7668	1	3209800	+		11024	25002	7560	7576	12484	12484					0.08437718368668357
EIIKQAQEV	9	Unmodified	_EIIKQAQEV_					0	0	0			REV__ENSG00000132554|ENST00000360863|RGS22	REV__ENSG00000132554|ENST00000360863|RGS22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2776489257812	2	529.298039	1056.58152	-0.28941	-0.00015319	0.22687	0.00012008	-0.062543	-3.3104E-05	529.2979268242162	57.73	0.45472	57.54	57.295	57.75	-0.19018					18	11	2	0	0	0	0.024209	1	6334	6334		31.53	0	1	330290	+		11025	23291	7561	7577	12485	12485					0.0554970826913177
EIILHYAAED	10	Unmodified	_EIILHYAAED_					0	0	0			REV__ENST00000557380.5_1_14:50304918-50319471:-|nuORF	REV__ENST00000557380.5_1_14:50304918-50319471:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	587.2954711914062	2	587.292953	1172.57135	-0.074375	-4.368E-05	3.8951	0.0022876	3.8208	0.0022439	587.2952118838654	73.974	2.1507	73.974	73.655	75.806	0					175	53	6	0	0	0	0.98754	1	9089	9089		47.657	3.2801	1	52037000	+		11026	25899	7562	7578	12486	12486					-0.008028994561072977
EIILLTTMLSL	11	Unmodified	_EIILLTTMLSL_					0	0	0		ENST00000557691.1_1_14:71277363-71281997:+|nuORF	ENST00000557691.1_1_14:71277363-71281997:+|nuORF	ENST00000557691.1_1_14:71277363-71281997:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.23870849609375	3	416.24908	1245.72541	-0.24187	-0.00010068	2.0061	0.00083504	1.7642	0.00073436	416.2498624182504	41.898	0.70064	41.775	41.642	42.343	-0.12299					29	18	3	0	0	0	0.024727	1	3724	3724		17.833	0	1	210060			11027	16737	7563	7579	12487	12487					0.11237793985060307
EIILRQEV	8	Unmodified	_EIILRQEV_					0	0	0		nc|ENSG00000163964|Q8TBF5-2|PIGX;ENSG00000163964|ENST00000392391|PIGX;ENST00000495440.1_1_3:196439919-196444680:+|nuORF	nc|ENSG00000163964|Q8TBF5-2|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7535400390625	2	500.295299	998.576045	-0.64932	-0.00032485	-1.3162	-0.00065847	-1.9655	-0.00098332	500.2956876346504	69.477	0.37303	69.209	68.995	69.368	-0.26725					11	8	2	0	0	0	0.027866	1	8032	8032		27.882	7.8855	1	80258			11028	7183	7564	7580	12488	12488					0.07670029477333173
EIINKLIKEI	10	Unmodified	_EIINKLIKEI_					0	0	0			REV__ENST00000521229.5_1_8:56675019-56675196:-|nuORF	REV__ENST00000521229.5_1_8:56675019-56675196:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	3	404.923585	1211.74892	-0.99259	-0.00040192	-1.6059	-0.00065029	-2.5985	-0.0010522	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.1195	1	1401	1401		20.837	1.7336	1	42819000	+		11029	34312	7565	7581	12489	12489					0.15151975813887475
EIIPAKTVPS	10	Unmodified	_EIIPAKTVPS_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7672119140625	2	527.810782	1053.60701	-0.85697	-0.00045232	-2.0014	-0.0010563	-2.8583	-0.0015087	527.8095257536663	29.771	0.52762	29.78	29.474	30.002	0.0086708					27	12	4	0	0	0	0.03519	1	1863	1863		32.812	1.2826	1	191710			11030	6479	7566	7582	12490	12490					0.08235182791554507
EIIPKREQFND	11	Unmodified	_EIIPKREQFND_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.28466796875	3	463.577136	1387.70958	1.7007	0.00078841	-1.8884	-0.00087544	-0.18772	-8.7023E-05	463.5762331262999	24.852	0.86864	24.68	24.165	25.034	-0.17151					32	19	2	0	0	0	0.024757	1	1091	1091		20.315	3.7852	1	57404			11031	4948	7567	7583	12491	12491					0.03123223792385943
EIIRCHYW	8	Unmodified	_EIIRCHYW_					0	0	0		ENST00000414948.1_1_1:8935893-8936052:-|nuORF	ENST00000414948.1_1_1:8935893-8936052:-|nuORF	ENST00000414948.1_1_1:8935893-8936052:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2540893554688	2	560.273844	1118.53313	-5.7827E-05	-3.2399E-08	4.0727	0.0022818	4.0726	0.0022818	560.7775150625163	64.441	0.55681	64.441	64.133	64.69	0					30	14	3	0	0	0	0.027866	1	7543	7543		55.504	0	1	261710			11032	13868	7568	7584	12492	12492					-0.021390638517686966
EIITKKFRRIL	11	Unmodified	_EIITKKFRRIL_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.9715576171875	3	472.973161	1415.89765	-0.21442	-0.00010141	-4.3979	-0.0020801	-4.6123	-0.0021815	472.9710650802329	49.088	1.4052	48.987	48.726	50.131	-0.1008					127	36	6	0	0	0	1.0764	1	4936	4936		17.833	4.8757	1	6827200	+		11033	27366	7569	7585	12493	12493					0.2063412650745704
EIITKKFRRIL	11	Unmodified	_EIITKKFRRIL_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.9712219238281	3	472.973161	1415.89765	-0.11653	-5.5115E-05	-4.3508	-0.0020578	-4.4673	-0.0021129	472.9710320575272	49.257	1.3974	49.075	48.773	50.17	-0.18206					114	36	5	0	0	0	1.0739	1	4929	4929		18.531	8.8849	1	6253400	+		11034	27366	7569	7585	12494	12494					0.2063412650745704
EIITKRLL	8	Unmodified	_EIITKRLL_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3066101074219	2	493.32386	984.633166	-1.0194	-0.00050287	1.0381	0.00051213	0.018765	9.2572E-06	493.3244717338161	69.546	0.28987	69.279	69.079	69.368	-0.26725					8	6	2	0	0	0	0.027866	1	8078	8078		29.15	0	1	66640			11035	2445	7570	7586	12495	12495					0.1402349675371397
EIIVGALVP	9	Unmodified	_EIIVGALVP_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2688903808594	2	455.784036	909.553519	-0.47058	-0.00021448	3.506	0.001598	3.0354	0.0013835	455.78549424187014	45.633	1.4473	45.482	44.863	46.31	-0.15157					81	41	4	0	0	0	0.024183	1	4330	4330		50.025	12.865	1	751330	+		11036	21403	7571	7587	12496	12496					0.0951243007971243
EIIVTKKP	8	Unmodified	_EIIVTKKP_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2923889160156	2	464.29731	926.580068	0.2813	0.00013061	-0.013241	-6.1476E-06	0.26806	0.00012446	464.2971178560503	60.933	0.52507	61.005	60.79	61.315	0.071125					22	13	2	0	0	0	0.027866	1	6939	6939		11.511	0	1	214130	+		11037	36798	7572	7588	12497	12497					0.1138411897103424
EIIVTKKPV	9	Unmodified	_EIIVTKKPV_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8087768554688	2	513.831517	1025.64848	-0.14252	-7.323E-05	-0.26151	-0.00013437	-0.40403	-0.0002076	513.8313241570768	67.575	1.0663	67.286	67.03	68.096	-0.28835					76	26	5	0	0	0	0.024021	1	8063	8063		58.782	9.3404	1	6087100	+		11038	36798	7573	7589	12498	12498					0.13668363550891627
EIIVTRGKP	9	Unmodified	_EIIVTRGKP_					0	0	0			REV__HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;REV__ENST00000388967.3_1_3:36809324-36810203:-|nuORF	REV__HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.81097412109375	2	506.811116	1011.60768	-0.55626	-0.00028192	-1.7477	-0.00088574	-2.3039	-0.0011677	506.81109513106367	56.846	1.1491	56.682	56.129	57.278	-0.16431					69	31	5	0	0	0	0.30449	1	6328	6328		75.043	3.1658	1	3136100	+		11039	24330;31564	7574	7590	12499	12499					0.1023402223128187
EIIWILPN	8	Unmodified	_EIIWILPN_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2923278808594	2	499.289485	996.564418	-0.22852	-0.0001141	-4.1564	-0.0020752	-4.3849	-0.0021893	499.2867076208886	47.698	0.5393	47.698	47.464	48.003	0					42	16	5	0	0	0	0.027866	1	4780	4780		53.351	25.469	1	1552200			11040	6282	7575	7591	12500	12500					0.06599832454003263
EIIWLLTV	8	Unmodified	_EIIWLLTV_					0	0	0			REV__ENSG00000010270|ENST00000009041|STARD3NL	REV__ENSG00000010270|ENST00000009041|STARD3NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77423095703125	2	493.799686	985.584819	-1.1072	-0.00054674	-3.3144	-0.0016367	-4.4216	-0.0021834	493.79785905991736	49.528	0.66806	49.602	49.279	49.947	0.074196					30	17	3	0	0	0	0.027866	1	5041	5041		33.516	0	1	771000	+		11041	19900	7576	7592	12501	12501					0.09145003113815164
EIIWSKLI	8	Unmodified	_EIIWSKLI_					0	0	0			REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.302734375	2	501.305136	1000.59572	-0.22471	-0.00011265	-4.3597	-0.0021855	-4.5844	-0.0022982	501.3028624991617	24.621	0.8645	24.447	24.129	24.993	-0.17484					49	19	4	0	0	0	0.6248	1	1102	1102		73.975	2.0973	1	2302800	+		11042	34713	7577	7593	12502	12502					0.09544405488099983
EIKAKEKL	8	Unmodified	_EIKAKEKL_					0	0	0			REV__nc|ENSG00000187109|P55209-3|NAP1L1	REV__nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.8002624511719	2	479.800217	957.585882	0.78443	0.00037637	-1.2611	-0.0006051	-0.47671	-0.00022873	479.7993807832015	22.109	0.79659	21.92	21.531	22.327	-0.18894					33	16	4	0	0	0	0.47665	1	750	750		87.754	8.3033	1	425940	+		11043	27915	7578	7594	12503	12503					0.1053921748269886
EIKAKEKL	8	Unmodified	_EIKAKEKL_					0	0	0			REV__nc|ENSG00000187109|P55209-3|NAP1L1	REV__nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.80035400390625	2	479.800217	957.585882	0.062654	3.0061E-05	-0.31252	-0.00014995	-0.24986	-0.00011988	479.7999922872413	22.222	0.57683	22.02	21.663	22.24	-0.20198					29	11	4	0	0	0	0.5947	1	732	732		76.774	2.7994	1	414220	+		11044	27915	7578	7594	12504	12504					0.1053921748269886
EIKAPIKPKL	10	Unmodified	_EIKAPIKPKL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.8532104492188	2	568.873717	1135.73288	0.49409	0.00028108	0.023607	1.3429E-05	0.5177	0.00029451	568.8751409935886	101.22	0.21127	101.09	101.03	101.24	-0.12576					7	4	2	0	0	0	0.03519	1	12587	12587		25.574	4.6271	1	48187	+		11045	25017	7579	7595	12505	12505					0.17044314367672087
EIKDALKRL	9	Unmodified	_EIKDALKRL_					0	0	0		ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.337158203125	2	543.337498	1084.66044	-0.98427	-0.00053479	0.18444	0.00010021	-0.79983	-0.00043458	543.3375877430747	48.614	1.6346	48.614	48.243	49.878	0					101	45	5	0	0	0	0.056725	1	4982	4982		126.24	7.4995	1	9406200			11046	8644	7580	7596	12506	12506					0.12149980294088891
EIKDALKRL	9	Unmodified	_EIKDALKRL_					0	0	0		ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.33740234375	2	543.337498	1084.66044	-1.0451	-0.00056785	0.26609	0.00014458	-0.77902	-0.00042327	543.337595664727	48.761	1.5232	48.608	48.329	49.852	-0.15276					106	41	5	0	0	0	0.12933	2	4963	4963;5001		104.01	5.3842	1	8387100			11047	8644	7580	7596	12507;12508	12507					0.12149980294088891
EIKDEKYIDN	10	Unmodified	_EIKDEKYIDN_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;ENST00000409532.5_2_2:173366626-173368977:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	633.3692626953125	2	633.81425	1265.61395	0.2661	0.00016866	-3.8131	-0.0024168	-3.547	-0.0022481	633.8117383653852	93.266	0.37794	93.262	93.032	93.41	-0.0042038					14	8	2	0	0	0	0.03519	1	11778	11778		37.812	9.73	1	69265			11048	371	7581	7597	12509	12509					-0.00823549118513256
EIKEHMVL	8	Unmodified	_EIKEHMVL_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENST00000585371.1_1_19:4428663-4429284:+|nuORF	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.76910400390625	2	499.770603	997.526652	-0.14176	-7.0848E-05	0.52167	0.00026071	0.37991	0.00018987	499.77074925881664	65.32	1.2406	65.32	64.983	66.224	0					92	33	4	0	0	0	0.6248	1	7713	7713		73.975	10.668	1	14555000			11049	7718	7582	7598	12510	12510					0.02778998196890825
EIKEHMVL	8	Unmodified	_EIKEHMVL_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENST00000585371.1_1_19:4428663-4429284:+|nuORF	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7685241699219	2	499.770603	997.526652	-0.019671	-9.8308E-06	0.42752	0.00021366	0.40785	0.00020383	499.77068014153656	65.305	1.2762	65.343	64.928	66.205	0.037376					89	34	4	0	0	0	0.68535	3	7634	7634;7645;7681		68.485	10.673	1	13501000			11050	7718	7582	7598	12511;12512;12513	12511					0.02778998196890825
EIKENTKN	8	Unmodified	_EIKENTKN_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.791015625	2	488.258914	974.503274	-0.85099	-0.00041551	-4.3711	-0.0021342	-5.2221	-0.0025497	488.25514217891265	83.672	0.34554	83.672	83.477	83.823	0					11	7	2	0	0	0	0.027866	1	10467	10467		51.335	0	1	48854			11051	3890	7583	7599	12514	12514					0.01500275683918062
EIKGGVLP	8	Unmodified	_EIKGGVLP_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.2481689453125	2	406.747453	811.480354	1.3617	0.00055385	4.1468	0.0016867	5.5085	0.0022406	406.74915455483307	87.747	2.3287	87.747	87.152	89.481	0					153	55	5	0	0	0	0.027866	1	11190	11190		37.159	12.956	1	43141000	+		11052	20087;37370	7584	7600	12515	12515					0.06707301357084816
EIKGGVLP	8	Unmodified	_EIKGGVLP_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2486877441406	2	406.747453	811.480354	2.342	0.00095261	3.068	0.0012479	5.41	0.0022005	406.74871949665425	87.755	2.5443	87.774	87.176	89.72	0.018555					155	60	5	0	0	0	0.027866	1	11026	11026		38.806	5.2906	1	38267000	+		11053	20087;37370	7584	7600	12516	12516					0.06707301357084816
EIKGGVLP	8	Unmodified	_EIKGGVLP_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	406.747453	811.480354	0.13673	5.5616E-05	5.4133	0.0022018	5.55	0.0022575	406.7496835216527	87.931	2.4332	87.752	87.196	89.629	-0.17875	-0.0050275	0.00093559	NaN	37.159	138	58	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36266000	+		11054	20087;37370	7584	7600							0.06707301357084816
EIKGGVLP	8	Unmodified	_EIKGGVLP_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	406.747453	811.480354	-0.04246	-1.727E-05	5.3747	0.0021861	5.3322	0.0021689	406.7496821096248	87.894	2.3734	87.756	87.289	89.663	-0.13743	-0.0012702	0.00090418	NaN	37.159	142	56	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25731000	+		11055	20087;37370	7584	7600							0.06707301357084816
EIKGKHLSLRA	11	Unmodified	_EIKGKHLSLRA_					0	0	0			REV__nc|ENSG00000166596|Q8N1V2-2|CFAP52	REV__nc|ENSG00000166596|Q8N1V2-2|CFAP52	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.92230224609375	3	417.922578	1250.7459	0.21081	8.8103E-05	-1.0544	-0.00044065	-0.84357	-0.00035255	417.9221205737804	104.31	0.87881	104.32	103.91	104.79	0.0031357					68	23	4	0	0	0	1.0834	1	13372	13372		15.921	1.227	1	2248100	+		11056	35470	7585	7601	12517	12517					0.13056145479754377
EIKGKIVL	8	Unmodified	_EIKGKIVL_					0	0	0			REV__ENSG00000184983|ENST00000498737|NDUFA6	REV__ENSG00000184983|ENST00000498737|NDUFA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2474060058594	2	450.299853	898.585153	-0.35667	-0.00016061	0.6003	0.00027032	0.24363	0.00010971	450.29997794654565	39.733	0.59002	39.51	39.225	39.815	-0.22311					25	14	2	0	0	0	0.027866	1	3376	3376		30.504	6.3009	1	288510	+		11057	27715	7586	7602	12518	12518					0.13180422833659122
EIKGKLKP	8	Unmodified	_EIKGKLKP_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2583312988281	2	456.797478	911.580402	0.45509	0.00020788	0.023199	1.0597E-05	0.47829	0.00021848	456.7972582701501	61.822	0.57776	61.595	61.261	61.839	-0.22663					25	14	3	0	0	0	0.027866	1	7116	7116		79.451	0	1	386620			11058	4326	7587	7603	12519	12519					0.1210753869089558
EIKGQIELL	9	Unmodified	_EIKGQIELL_					0	0	0			REV__ENSG00000125484|ENST00000372146|GTF3C4	REV__ENSG00000125484|ENST00000372146|GTF3C4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7658081054688	2	521.810782	1041.60701	0.17466	9.1138E-05	0.2468	0.00012878	0.42146	0.00021992	521.8107019122461	78.566	0.56158	78.41	78.17	78.731	-0.15591					24	12	3	0	0	0	0.024477	1	9390	9390		35.618	7.736	1	141510	+		11059	22823	7588	7604	12520	12520					0.0878718279154782
EIKGRSLFL	9	Unmodified	_EIKGRSLFL_					0	0	0			REV__ENST00000382159.7_1_19:2514511-2514568:-|nuORF	REV__ENST00000382159.7_1_19:2514511-2514568:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.816162109375	2	531.818941	1061.62333	0.061557	3.2737E-05	-3.5146	-0.0018691	-3.453	-0.0018364	531.8169861653995	99.962	0.63961	99.956	99.608	100.25	-0.0050888					34	17	3	0	0	0	0.77768	1	12721	12721		40.778	6.6056	1	1034500	+		11060	31536	7589	7605	12521	12521					0.09498308748334239
EIKHLYFQF	9	Unmodified	_EIKHLYFQF_					0	0	0			REV__nc|ENSG00000131686|P23280-3|CA6	REV__nc|ENSG00000131686|P23280-3|CA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	408.8850402832031	3	408.885241	1223.63389	1.5858	0.00064839	-1.9433	-0.0007946	-0.35757	-0.0001462	408.8844199780732	23.248	0.77106	23.057	22.758	23.529	-0.19117					43	17	3	0	0	0	0.82115	1	869	869		37.812	3.725	1	1226800	+		11061	23226	7590	7606	12522	12522					0.03102291402751689
EIKHLYFQF	9	Unmodified	_EIKHLYFQF_					0	0	0			REV__nc|ENSG00000131686|P23280-3|CA6	REV__nc|ENSG00000131686|P23280-3|CA6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	408.885241	1223.63389	1.5858	0.00064839	-1.9433	-0.0007946	-0.35757	-0.0001462	408.8844199780732	23.248	0.77106	23.057	22.758	23.529	-0.19117	0.010725	-0.0013335	NaN	37.812	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1226800	+		11062	23226	7590	7606							0.03102291402751689
EIKIERRLF	9	Unmodified	_EIKIERRLF_					0	0	0			REV__ENSG00000198822|ENST00000361669|GRM3	REV__ENSG00000198822|ENST00000361669|GRM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.55963134765625	3	401.91179	1202.71354	-0.82508	-0.00033161	4.1829	0.0016811	3.3578	0.0013495	401.9137747179473	35.515	0.1568	35.328	35.22	35.377	-0.18675					5	3	2	0	0	0	0.024541	1	2685	2685		17.468	0	1	60991	+		11063	28488	7591	7607	12523	12523					0.1202935807675658
EIKIGLLN	8	Unmodified	_EIKIGLLN_					0	0	0			REV__ENST00000609706.1_1_22:38244637-38244802:-|nuORF	REV__ENST00000609706.1_1_22:38244637-38244802:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76654052734375	2	450.28166	898.548768	-0.58362	-0.00026279	0.52034	0.0002343	-0.063283	-2.8495E-05	450.2815502543888	45.034	0.37613	44.934	44.672	45.048	-0.099449					13	9	2	0	0	0	0.027866	1	4232	4232		30.504	3.7075	1	126710	+		11064	35986	7592	7608	12524	12524					0.09543545936946884
EIKIGLLN	8	Unmodified	_EIKIGLLN_					0	0	0			REV__ENST00000609706.1_1_22:38244637-38244802:-|nuORF	REV__ENST00000609706.1_1_22:38244637-38244802:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.766357421875	2	450.28166	898.548768	-0.35592	-0.00016026	-2.6533	-0.0011947	-3.0092	-0.001355	450.2813134655697	45.173	0.45457	44.921	44.67	45.124	-0.25252					13	11	2	0	0	0	0.027866	1	4249	4249		23.042	5.6775	1	169250	+		11065	35986	7592	7608	12525	12525					0.09543545936946884
EIKKAECAW	9	Unmodified	_EIKKAECAW_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8167724609375	2	539.273509	1076.53247	-1.7604	-0.00094936	2.9522	0.0015921	1.1918	0.00064269	539.2748551257391	43.703	0.43242	43.484	43.316	43.749	-0.21938					16	11	2	0	0	0	0.024447	1	4038	4038		25.574	4.6271	1	153450	+		11066	20087	7593	7609	12526	12526					-0.002739032914632844
EIKKAVKE	8	Unmodified	_EIKKAVKE_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2792663574219	2	472.792392	943.570232	-0.55728	-0.00026348	1.5314	0.00072405	0.97416	0.00046057	472.7928696064093	55.439	0.52201	55.224	54.967	55.489	-0.21551					25	14	3	0	0	0	0.027866	1	5893	5893		27.882	4.8398	1	279470			11067	770	7594	7610	12527	12527					0.0961893096566655
EIKKKILYE	9	Unmodified	_EIKKKILYE_					0	0	0		ENSG00000203667|ENST00000411948|COX20;nc|ENSG00000203667|Q5RI15-2|COX20	ENSG00000203667|ENST00000411948|COX20	ENSG00000203667|ENST00000411948|COX20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3530883789062	2	582.355357	1162.69616	0.23222	0.00013523	-3.492	-0.0020336	-3.2598	-0.0018983	582.3532009393155	102.38	1.4655	102.25	101.9	103.36	-0.12931					112	34	7	0	0	0	0.77768	1	12691	12691		40.778	9.2484	1	8525700			11068	10272	7595	7611	12528	12528					0.12132017751105195
EIKKKLHKI	9	Unmodified	_EIKKKLHKI_					0	0	0			REV__ENST00000435327.2_1_3:42791351-42799837:-|nuORF	REV__ENST00000435327.2_1_3:42791351-42799837:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.853515625	2	568.879333	1135.74411	-0.64235	-0.00036542	-1.7785	-0.0010118	-2.4209	-0.0013772	568.8785311419985	101.14	0.20721	101.14	101.03	101.24	0					7	4	2	0	0	0	0.024374	1	12955	12955		32.812	11.865	1	57235	+		11069	29001	7596	7612	12529	12529					0.1816713646178414
EIKKMSGKSL	10	Unmodified	_EIKKMSGKSL_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.30810546875	2	560.823366	1119.63218	-0.56041	-0.00031429	-3.1959	-0.0017923	-3.7563	-0.0021066	560.8218402386406	67.473	0.34438	67.235	67.078	67.422	-0.23814					15	7	3	0	0	0	0.03519	1	7765	7765		46.457	0	1	111670	+		11070	25141	7597	7613	12530	12530					0.07714914322514232
EIKKQAYK	8	Unmodified	_EIKKQAYK_					0	0	0			REV__nc|ENSG00000172575|O95267-2|RASGRP1	REV__nc|ENSG00000172575|O95267-2|RASGRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.78790283203125	2	504.297842	1006.58113	0.97549	0.00049194	1.6927	0.00085362	2.6682	0.0013456	504.29761797348397	20.093	0.5304	19.892	19.505	20.035	-0.2001					18	10	3	0	0	0	0.027866	1	462	462		21.96	0	1	38905	+		11071	26689	7598	7614	12531	12531					0.07810333339944009
EIKKRMGP	8	Unmodified	_EIKKRMGP_					0	0	0		nc|ENSG00000138069|P62820-3|RAB1A;ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A;nc|ENSG00000138069|P62820-2|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	nc|ENSG00000138069|P62820-3|RAB1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2923278808594	2	479.778762	957.542971	-0.98519	-0.00047267	3.5134	0.0016856	2.5282	0.001213	479.7807722965476	55.947	0.62675	55.732	55.412	56.038	-0.21551					22	16	2	0	0	0	0.027866	1	6031	6031		31.955	12.595	1	145370			11072	5198	7599	7615	12532	12532					0.0625012415364381
EIKKTEVL	8	Unmodified	_EIKKTEVL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2922058105469	2	480.292225	958.569897	-0.25747	-0.00012366	-0.46899	-0.00022525	-0.72646	-0.00034891	480.2919784247279	31.566	1.0632	31.381	31.062	32.125	-0.18503					83	25	4	0	0	0	0.50239	1	2099	2099		85.359	3.0545	1	10630000			11073	8589	7600	7616	12533	12533					0.08895511245816579
EIKLWKYR	8	Unmodified	_EIKLWKYR_					0	0	0			REV__ENST00000395850.7_1_11:33731053-33731380:-|nuORF	REV__ENST00000395850.7_1_11:33731053-33731380:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.8532104492188	2	568.334759	1134.65496	0.49731	0.00028264	-0.75151	-0.00042711	-0.2542	-0.00014447	568.8362785715012	101.23	0.29966	101.11	100.94	101.24	-0.12576					8	6	2	0	0	0	0.027866	1	12587	12587		47.916	3.7988	1	65253	+		11074	31717	7601	7617	12534	12534					0.09302301502248156
EIKLYLLKSA	10	Unmodified	_EIKLYLLKSA_					0	0	0			REV__ENST00000427278.7_1_2:145275823-145275997:+|nuORF	REV__ENST00000427278.7_1_2:145275823-145275997:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3424682617188	2	589.363182	1176.71181	-2.1414	-0.0012621	-1.191	-0.00070195	-3.3325	-0.001964	589.3622354507671	92.531	0.35995	92.387	92.087	92.447	-0.14356					12	8	2	0	0	0	0.03519	1	11342	11342		24.519	9.6543	1	119390	+		11075	32291	7602	7618	12535	12535					0.13052304268148873
EIKNCVVAEP	10	Unmodified	_EIKNCVVAEP_					0	0	0		nc|ENSG00000126545|P47710-3|CSN1S1	nc|ENSG00000126545|P47710-3|CSN1S1	nc|ENSG00000126545|P47710-3|CSN1S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2675170898438	2	551.284074	1100.5536	-0.35846	-0.00019761	-0.13349	-7.359E-05	-0.49195	-0.0002712	551.283708659022	25.553	0.50752	25.381	25.2	25.708	-0.17151					23	11	3	0	0	0	0.03519	1	1213	1213		28.081	0	1	136700			11076	18246	7603	7619	12536	12536					0.007340620174090873
EIKNFSTEKL	10	Unmodified	_EIKNFSTEKL_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12;nc|ENSG00000205045|Q6IEE8|SLFN12L;ENSG00000205045|ENST00000628453|SLFN12L;nc|ENSG00000205045|Q6IEE8-2|SLFN12L	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.55487060546875	3	403.555561	1207.64485	-0.011524	-4.6505E-06	-1.7494	-0.00070596	-1.7609	-0.00071061	403.55476099232806	22.42	0.93721	22.218	21.903	22.84	-0.20199					63	19	5	0	0	0	1.0616	1	778	778		37.812	0.30334	1	1373800			11077	8242	7604	7620	12537	12537					0.049336489863890165
EIKNKKGTDL	10	Unmodified	_EIKNKKGTDL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.3298950195312	2	573.32987	1144.64519	0.73913	0.00042376	-0.18101	-0.00010378	0.55812	0.00031998	573.3290090050123	19.516	0.64489	19.316	19.057	19.701	-0.2001					30	12	3	0	0	0	1.0344	1	427	427		41.427	2.1738	1	157530			11078	1995	7605	7621	12538	12538					0.07865068706246348
EIKNKKGTDL	10	Unmodified	_EIKNKKGTDL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	573.32987	1144.64519	0.38777	0.00022232	-0.063525	-3.6421E-05	0.32424	0.0001859	573.329388005812	19.374	0.54395	19.213	19.034	19.578	-0.16079	-0.051551	6.524E-05	NaN	41.427	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169550			11079	1995	7605	7621							0.07865068706246348
EIKNKLKEI	9	Unmodified	_EIKNKLKEI_					0	0	0		ENSG00000198783|ENST00000361952|ZNF830	ENSG00000198783|ENST00000361952|ZNF830	ENSG00000198783|ENST00000361952|ZNF830	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8324584960938	2	557.845156	1113.67576	-0.58476	-0.00032621	4.1277	0.0023026	3.5429	0.0019764	557.8479122219338	22.605	0.22612	22.42	22.281	22.507	-0.18539					6	4	2	0	0	0	0.015852	1	801	801		139.97	35.224	1	22714			11080	10197	7606	7622	12539	12539					0.12346847091271229
EIKNKVLNKL	10	Unmodified	_EIKNKVLNKL_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.8877868652344	3	400.255446	1197.74451	0.71743	0.00028716	3.514	0.0014065	4.2314	0.0016936	400.2567960772232	22.9	0.77632	22.715	22.46	23.237	-0.18539					26	16	3	0	0	0	0.03519	1	847	847		41.427	0	1	217610	+		11081	25703	7607	7623	12540	12540					0.15354511391001324
EIKNLVTV	8	Unmodified	_EIKNLVTV_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2681884765625	2	458.279118	914.543683	0.56266	0.00025785	-0.39855	-0.00018264	0.16411	7.5209E-05	458.2789399929776	74.815	0.9121	74.815	74.466	75.378	0					40	22	2	0	0	0	0.027866	1	9176	9176		34.173	5.023	1	1272500	+		11082	28343	7608	7624	12541	12541					0.08299242074349422
EIKNTLRKHI	10	Unmodified	_EIKNTLRKHI_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	626.3798828125	2	626.380229	1250.7459	-0.014204	-8.8969E-06	-0.80991	-0.00050731	-0.82411	-0.00051621	626.3796706228852	104.33	1.1031	104.33	103.94	105.04	0					82	30	5	0	0	0	1.037	2	13381	13381;13393		44.377	12.257	1	2455700			11083	4700	7609	7625	12542;12543	12542					0.13056145479754377
EIKNTLRKHI	10	Unmodified	_EIKNTLRKHI_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	626.3798217773438	2	626.380229	1250.7459	0.42062	0.00026347	-1.3282	-0.00083195	-0.90756	-0.00056848	626.3792952337366	104.3	0.95153	104.3	103.98	104.93	0.0031357					73	26	4	0	0	0	1.0896	1	13350	13350		29.17	0	1	2383900			11084	4700	7609	7625	12544	12544					0.13056145479754377
EIKNTLRKHI	10	Unmodified	_EIKNTLRKHI_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	626.3798828125	2	626.380229	1250.7459	-0.27721	-0.00017364	-0.73824	-0.00046242	-1.0154	-0.00063605	626.3796667254875	104.41	0.99722	104.4	104.07	105.07	-0.0032196					76	28	5	0	0	0	1.037	4	13357	13303;13337;13347;13357		36.447	9.4791	1	2578900			11085	4700	7609	7625	12545;12546;12547;12548	12548					0.13056145479754377
EIKNTLRKHI	10	Unmodified	_EIKNTLRKHI_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	626.3792724609375	2	626.380229	1250.7459	0.14483	9.0718E-05	-1.1743	-0.00073555	-1.0295	-0.00064483	626.3793744637064	104.44	1.1159	104.31	103.92	105.03	-0.12561					95	32	5	0	0	0	1.0896	2	13001	13001;13013		29.17	1.2878	1	2513500			11086	4700	7609	7625	12549;12550	12549					0.13056145479754377
EIKNTLRKHI	10	Unmodified	_EIKNTLRKHI_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.3793334960938	2	626.380229	1250.7459	-1.3509	-0.00084619	0.33333	0.00020879	-1.0176	-0.00063739	626.3803519046847	104.49	0.97306	104.36	104.02	105	-0.12928					86	31	4	0	0	0	1.0194	2	13014	12994;13014		46.457	28.989	1	2188000			11087	4700	7609	7625	12551;12552	12552					0.13056145479754377
EIKNTLRKHI	10	Unmodified	_EIKNTLRKHI_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.3798217773438	2	626.380229	1250.7459	0.33644	0.00021074	-1.282	-0.00080303	-0.94557	-0.00059229	626.3792889018249	104.56	1.023	104.39	104.02	105.04	-0.16791					95	33	5	0	0	0	1.0194	3	13003	12974;13003;13028		46.457	12.535	1	2470500			11088	4700	7609	7625	12553;12554;12555	12554					0.13056145479754377
EIKPRLSR	8	Unmodified	_EIKPRLSR_					0	0	0		nc|ENSG00000179362|Q86SG4-3|HMGN2P46;nc|ENSG00000179362|Q86SG4-2|HMGN2P46;nc|ENSG00000179362|Q86SG4|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.82672119140625	2	499.808908	997.603263	-0.78544	-0.00039257	1.2444	0.00062198	0.45899	0.00022941	499.8102684645445	21.986	0.28709	21.784	21.712	21.999	-0.20199					7	5	2	0	0	0	0.027866	1	729	729		56.721	6.6965	1	39038			11089	18555	7610	7626	12556	12556					0.1043655780838435
EIKQGIKSL	9	Unmodified	_EIKQGIKSL_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.3059997558594	2	508.310949	1014.60735	0.067416	3.4268E-05	2.405	0.0012225	2.4725	0.0012568	508.3117921742652	91.692	1.3088	91.552	91.105	92.414	-0.13942					34	30	2	0	0	0	0.024438	1	11259	11259		29.17	0	1	107120			11090	10044	7611	7627	12557	12557					0.1006260251143658
EIKQIRAR	8	Unmodified	_EIKQIRAR_					0	0	0		ENSG00000137252|ENST00000370862|HCRTR2	ENSG00000137252|ENST00000370862|HCRTR2	ENSG00000137252|ENST00000370862|HCRTR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.8132629394531	2	507.314358	1012.61416	-0.46002	-0.00023337	2.616	0.0013272	2.156	0.0010938	507.31554943219794	91.813	1.4488	91.804	91.578	93.027	-0.0094604					55	33	3	0	0	0	0.027866	1	11754	11754		17.365	0	1	369470			11091	5105	7612	7628	12558	12558					0.108359601826578
EIKQRRAE	8	Unmodified	_EIKQRRAE_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7960205078125	2	515.293622	1028.57269	-0.143	-7.3687E-05	-0.10662	-5.4939E-05	-0.24962	-0.00012863	515.2933540007887	23.939	0.56288	23.759	23.395	23.958	-0.17989					22	12	3	0	0	0	0.027866	1	967	967		66.429	5.4573	1	489870	+		11092	23785	7613	7629	12559	12559					0.05954779423336731
EIKRILSYFI	10	Unmodified	_EIKRILSYFI_					0	0	0		ENST00000307296.7_1_3:33908633-33908810:+|nuORF	ENST00000307296.7_1_3:33908633-33908810:+|nuORF	ENST00000307296.7_1_3:33908633-33908810:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.3849487304688	2	641.381906	1280.74926	0.67978	0.000436	3.6528	0.0023429	4.3326	0.0027789	641.3840767110357	101.35	0.78249	101.35	100.99	101.77	0					50	17	4	0	0	0	1.1088	1	12997	12997		31.53	5.9558	1	1108100			11093	12010	7614	7630	12560	12560					0.12011395533772884
EIKRILSYFI	10	Unmodified	_EIKRILSYFI_					0	0	0		ENST00000307296.7_1_3:33908633-33908810:+|nuORF	ENST00000307296.7_1_3:33908633-33908810:+|nuORF	ENST00000307296.7_1_3:33908633-33908810:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.3846435546875	2	641.381906	1280.74926	0.32425	0.00020797	4.1321	0.0026502	4.4563	0.0028582	641.384403061277	101.43	0.69904	101.31	100.98	101.68	-0.12576					51	15	4	0	0	0	1.0992	1	12600	12600		32.812	2.4947	1	942170			11094	12010	7614	7630	12561	12561					0.12011395533772884
EIKRKAEV	8	Unmodified	_EIKRKAEV_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.79522705078125	2	486.795466	971.57638	0.5067	0.00024666	-0.72063	-0.0003508	-0.21393	-0.00010414	486.7950270285052	18.775	1.138	18.618	18.346	19.484	-0.15637					45	22	3	0	0	0	0.71833	1	353	353		65.803	15.779	1	568910			11095	4356	7615	7631	12562	12562					0.08945449197187827
EIKRKAEV	8	Unmodified	_EIKRKAEV_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.79498291015625	2	486.795466	971.57638	0.45211	0.00022008	-0.66412	-0.00032329	-0.21202	-0.00010321	486.79500285340094	18.819	0.69191	18.615	18.361	19.053	-0.20371					37	13	4	0	0	0	0.28835	1	340	340		116.9	17.529	1	471590			11096	4356	7615	7631	12563	12563					0.08945449197187827
EIKRKKAHPD	10	Unmodified	_EIKRKKAHPD_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3558959960938	2	611.356754	1220.69895	-0.81331	-0.00049722	-0.21283	-0.00013012	-1.0261	-0.00062734	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.1266	1	12104	12104		29.17	2.4771	1	11166000			11097	3284	7616	7632	12564	12564					0.09743285928607293
EIKRQVPA	8	Unmodified	_EIKRQVPA_					0	0	0			REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7721862792969	2	470.782359	939.550165	0.15606	7.3468E-05	0.13456	6.3348E-05	0.29061	0.00013682	470.7823362916154	46.918	0.30302	46.977	46.803	47.106	0.059097					11	7	2	0	0	0	0.027866	1	4586	4586		19.36	0	1	149650	+		11098	20498	7617	7633	12565	12565					0.07797180025715988
EIKSIKNYSL	10	Unmodified	_EIKSIKNYSL_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.8563842773438	2	597.840071	1193.66559	-0.16394	-9.8011E-05	-2.6529	-0.001586	-2.8169	-0.001684	597.8384510729053	92.615	0.20517	92.474	92.29	92.495	-0.14131					6	4	2	0	0	0	0.03519	1	11370	11370		40.058	18.098	1	35153	+		11099	22451	7618	7634	12566	12566					0.07650239366034839
EIKSKLASL	9	Unmodified	_EIKSKLASL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.80657958984375	2	494.8055	987.596446	-0.41334	-0.00020452	-0.12897	-6.3816E-05	-0.54231	-0.00026834	494.8053332169201	81.812	1.1222	81.838	81.536	82.658	0.025711					56	26	3	0	0	0	0.45795	1	10129	10129		62.107	19.633	1	1425100			11100	8705	7619	7635	12567	12567					0.10215200137145075
EIKSKLASL	9	Unmodified	_EIKSKLASL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.80535888671875	2	494.8055	987.596446	-0.7155	-0.00035403	1.3583	0.00067208	0.64277	0.00031805	494.8060312279835	39.433	0.64546	39.269	39.008	39.653	-0.16458					46	16	4	0	0	0	0.1158	1	3350	3350		107.01	39.514	1	2188500			11101	8705	7619	7635	12568	12568					0.10215200137145075
EIKSKLASL	9	Unmodified	_EIKSKLASL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.8056335449219	2	494.8055	987.596446	-0.37031	-0.00018323	0.86688	0.00042893	0.49657	0.0002457	494.8058145311442	39.594	0.96991	39.371	39.073	40.043	-0.22311					54	24	4	0	0	0	0.16468	1	3361	3361		96.19	27.404	1	2232900			11102	8705	7619	7635	12569	12569					0.10215200137145075
EIKSKLASL	9	Unmodified	_EIKSKLASL_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.8055725097656	2	494.8055	987.596446	-0.057803	-2.8601E-05	0.54947	0.00027188	0.49167	0.00024328	494.80559444958845	39.575	0.75604	39.349	39.059	39.815	-0.2257					54	19	4	0	0	0	0.12602	2	3346	3346;3367		104.75	33.451	1	2256000			11103	8705	7619	7635	12570;12571	12570					0.10215200137145075
EIKSLKLFL	9	Unmodified	_EIKSLKLFL_					0	0	0			REV__ENSG00000178075|ENST00000358160|GRAMD1C	REV__ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2571411132812	2	545.847167	1089.67978	0.39342	0.00021475	-1.0577	-0.00057732	-0.66424	-0.00036258	545.8469914070585	59.412	0.32285	59.23	59.112	59.435	-0.18134					15	7	3	0	0	0	0.023417	1	6582	6582		79.451	30.009	1	94673	+		11104	27163	7620	7636	12572	12572					0.13852936584976305
EIKTHFWE	8	Unmodified	_EIKTHFWE_					0	0	0			REV__chr17:40864856-41502937|137|17.41|0.0|12.37|-|0|None,KRT13|1	REV__chr17:40864856-41502937|137|17.41|0.0|12.37|-|0|None,KRT13|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2332153320312	2	545.271824	1088.5291	-1.8696	-0.0010194	0.25775	0.00014054	-1.6118	-0.00087889	545.2718658567983	29.779	0.60881	29.779	29.408	30.017	0					21	14	2	0	0	0	0.027866	1	1845	1845		63.306	10.37	1	29572	+		11105	19387	7621	7637	12573	12573					-0.011628300738038888
EIKTIARHL	9	Unmodified	_EIKTIARHL_					0	0	0		nc|ENSG00000163626|Q8N8Q8|COX18;ENSG00000163626|ENST00000507544|COX18	nc|ENSG00000163626|Q8N8Q8|COX18	nc|ENSG00000163626|Q8N8Q8|COX18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.83154296875	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.75397	1	9318	9318		42.396	4.5846	1	94452000			11106	7117	7622	7638	12574	12574					0.10849113496897189
EIKTKEEP	8	Unmodified	_EIKTKEEP_					0	0	0			REV__ENSG00000135541|ENST00000265602|AHI1;REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	REV__ENSG00000135541|ENST00000265602|AHI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2616271972656	2	487.263665	972.512776	-0.097987	-4.7746E-05	0.00045941	2.2385E-07	-0.097528	-4.7522E-05	487.26351953450575	76.911	0.498	76.742	76.482	76.98	-0.16853					20	11	2	0	0	0	0.027866	1	9162	9162		42.396	6.7778	1	341420	+		11107	23557;34563	7623	7639	12575	12575					0.025420439694244124
EIKTKIKEL	9	Unmodified	_EIKTKIKEL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.34765625	2	551.347532	1100.68051	-0.092721	-5.1121E-05	-0.048016	-2.6474E-05	-0.14074	-7.7595E-05	551.3473869962195	31.815	0.99924	31.578	31.299	32.299	-0.23667					58	23	4	0	0	0	0.042502	2	2150	2150;2159		131.62	19.509	1	1884200			11108	3830	7624	7640	12576;12577	12576					0.13419731234057508
EIKTKIKEL	9	Unmodified	_EIKTKIKEL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3478393554688	2	551.347532	1100.68051	-0.045873	-2.5292E-05	-0.05249	-2.894E-05	-0.098363	-5.4232E-05	551.347377022335	31.767	0.97939	31.581	31.321	32.3	-0.18503					61	22	4	0	0	0	0.034407	2	2137	2137;2148		138.06	20.251	1	1628300			11109	3830	7624	7640	12578;12579	12578					0.13419731234057508
EIKTKIKEL	9	Unmodified	_EIKTKIKEL_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3475341796875	2	551.347532	1100.68051	-0.50172	-0.00027662	0.24883	0.00013719	-0.25289	-0.00013943	551.3475439665972	31.854	0.83279	31.696	31.412	32.245	-0.15772					50	19	4	0	0	0	0.01896	2	2148	2134;2148		150.36	20.94	1	1683000			11110	3830	7624	7640	12580;12581	12581					0.13419731234057508
EIKVKDDTPSR	11	Unmodified	_EIKVKDDTPSR_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.90240478515625	3	429.90162	1286.68303	1.0779	0.00046339	0.60461	0.00025992	1.6825	0.00072332	429.90179664472663	110.37	0.82458	110.37	110.08	110.91	0					96	25	5	0	0	0	1.0592	1	14030	14030		20.315	0.28454	1	1108500	+		11111	22022	7625	7641	12582	12582					0.05115534901051433
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	501.290548	1000.56654	0.79479	0.00039842	-1.5169	-0.00076043	-0.72216	-0.00036201	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.84115	2	10901	10814;10901		36.447	4.9169	1	8460100	+		11112	22645	7626	7642	12583;12584	12584					0.06628261191804086
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	501.290548	1000.56654	0.40529	0.00020317	-0.52388	-0.00026262	-0.11859	-5.945E-05	501.2901072345097	88.222	1.3061	88.222	87.922	89.228	0					72	30	5	0	0	0	0.67687	1	11136	11136		47.657	1.7054	1	995670	+		11113	22645	7626	7642	12585	12585					0.06628261191804086
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2904357910156	2	501.290548	1000.56654	-0.38963	-0.00019532	-0.25636	-0.00012851	-0.64599	-0.00032383	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.82115	1	10846	10846		37.812	1.3648	1	8504000	+		11114	22645	7626	7642	12586	12586					0.06628261191804086
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2906188964844	2	501.290548	1000.56654	-0.51649	-0.00025891	-0.28986	-0.0001453	-0.80636	-0.00040422	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.72494	1	10612	10612		44.377	5.571	1	8326900	+		11115	22645	7626	7642	12587	12587					0.06628261191804086
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904052734375	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.84115	2	10292	10292;10399		36.447	1.2878	1	10557000	+		11116	22645	7626	7642	12588;12589	12588					0.06628261191804086
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29071044921875	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.74711	2	10552	10365;10552		42.864	6.4175	1	10571000	+		11117	22645	7626	7642	12590;12591	12591					0.06628261191804086
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2908630371094	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.91321	1	10392	10392		31.53	1.0262	1	10074000	+		11118	22645	7626	7642	12592	12592					0.06628261191804086
EILAEELCTPP	11	Unmodified	_EILAEELCTPP_					0	0	0		ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	ELAC2|p.T387Mfs*63|1|0.25|ENSG00000006744|chr17:13002499-13002500|-/AAACA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	405.53729	1213.59004	-0.96818	-0.00039263	3.9426	0.0015989	2.9744	0.0012062	405.5398774955653	26.488	0.14863	26.325	26.271	26.419	-0.16331					5	3	2	0	0	0	0.024747	1	1353	1353		16.53	0	1	40924			11119	696	7627	7643	12593	12593					-0.008211058765482449
EILDRLPQA	9	Unmodified	_EILDRLPQA_					0	0	0			REV__ENST00000488401.5_1_3:183993962-184009147:+|nuORF	REV__ENST00000488401.5_1_3:183993962-184009147:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.239013671875	2	527.798206	1053.58186	1.6174	0.00085366	1.4354	0.00075762	3.0528	0.0016113	528.3003632794994	63.502	0.39454	63.556	63.373	63.768	0.054104					14	10	2	0	0	0	0.024292	1	7340	7340		40.778	0	1	76208	+		11120	33643	7628	7644	12594	12594					0.05721127988999797
EILEGITIVG	10	Unmodified	_EILEGITIVG_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3025512695312	2	522.30279	1042.59103	-0.13307	-6.9504E-05	0.38079	0.00019889	0.24772	0.00012938	522.3030870562986	86.484	0.56743	86.297	86.123	86.69	-0.18696					15	12	2	0	0	0	0.03519	1	10543	10543		42.396	0	1	49489			11121	9045	7629	7645	12595	12595					0.0714347655466554
EILEKENPK	9	Unmodified	_EILEKENPK_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.3045043945312	2	550.303321	1098.59209	0.44517	0.00024498	3.5513	0.0019543	3.9965	0.0021993	550.3050853761505	19.035	0.64227	18.832	18.411	19.053	-0.20371					18	12	2	0	0	0	0.45795	1	367	367		62.107	3.3255	1	95473	+		11122	19839	7630	7646	12596	12596					0.04673690923573304
EILEKENPK	9	Unmodified	_EILEKENPK_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.303321	1098.59209	0.42618	0.00023453	3.7518	0.0020647	4.178	0.0022992	550.3052714060079	18.956	0.49391	18.797	18.492	18.986	-0.1593	0.0020867	0.00044416	NaN	62.107	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111660	+		11123	19839	7630	7646							0.04673690923573304
EILEKENPK	9	Unmodified	_EILEKENPK_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	550.303321	1098.59209	0.44517	0.00024498	3.5513	0.0019543	3.9965	0.0021993	550.3050853761505	19.035	0.64227	18.832	18.411	19.053	-0.20371	0.037006	0.00022347	NaN	62.107	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95473	+		11124	19839	7630	7646							0.04673690923573304
EILEKENPK	9	Unmodified	_EILEKENPK_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.303321	1098.59209	2.1399	0.0011776	2.2119	0.0012172	4.3518	0.0023948	550.3042539599936	18.989	0.39513	18.756	18.582	18.978	-0.23345	-0.039093	-0.0012507	NaN	62.107	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92656	+		11125	19839	7630	7646							0.04673690923573304
EILELTRLLPL	11	Unmodified	_EILELTRLLPL_					0	0	0		ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.8813781738281	3	437.274506	1308.80169	-0.46593	-0.00020374	-1.9713	-0.00086201	-2.4373	-0.0010657	437.27355129358284	39.989	0.78959	40.012	39.67	40.46	0.023006					60	21	4	0	0	0	0.024466	1	3400	3400		86.882	21.416	1	694010			11126	8964	7631	7647	12597	12597					0.159639338766965
EILERAQT	8	Unmodified	_EILERAQT_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7425842285156	2	480.261456	958.50836	-0.46819	-0.00022485	2.8639	0.0013754	2.3958	0.0011506	480.2630039831549	45.702	0.44395	45.55	45.412	45.856	-0.15156					16	12	2	0	0	0	0.027866	1	4421	4421		16.473	0	1	292270	+		11127	27081	7632	7648	12598	12598					0.027445795465155243
EILEVLLQV	9	Unmodified	_EILEVLLQV_					0	0	0		ENST00000485963.5_1_22:21152870-21213097:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENST00000485963.5_1_22:21152870-21213097:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2970581054688	2	528.320983	1054.62741	-0.75945	-0.00040123	4.0685	0.0021495	3.3091	0.0017483	528.3232783061982	56.105	0.38375	56.105	55.858	56.241	0					18	10	2	0	0	0	0.024405	1	6244	6244		27.882	0	1	97332			11128	10789;15335	7633	7649	12599	12599					0.10228353451361727
EILFGGFSL	9	Unmodified	_EILFGGFSL_					0	0	0		nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2851257324219	2	491.765843	981.517133	0.19377	9.529E-05	-2.8175	-0.0013856	-2.6237	-0.0012903	491.76449322564525	93.436	0.50997	93.436	93.135	93.645	0					15	11	2	0	0	0	0.024323	1	11842	11842		44.117	12.162	1	74408			11129	18769	7634	7650	12600	12600					0.025635531830062064
EILFPLFF	8	Unmodified	_EILFPLFF_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ABCA5|p.D181Rfs*21|1|0.18|ENSG00000154265|chr17:69308298-69308299|-/A|frameshift_variant	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.81787109375	2	513.288954	1024.56336	0.45392	0.00023299	-4.419	-0.0022682	-3.9651	-0.0020352	513.2865304432488	68.429	0.43961	68.198	68	68.439	-0.23048					16	10	2	0	0	0	0.027866	1	7916	7916		28.254	0	1	142630			11130	6397	7635	7651	12601	12601					0.0520561808509683
EILHLSWY	8	Unmodified	_EILHLSWY_					0	0	0		ENST00000420497.6_1_2:214161797-214167284:+|nuORF	ENST00000420497.6_1_2:214161797-214167284:+|nuORF	ENST00000420497.6_1_2:214161797-214167284:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3229370117188	2	530.776742	1059.53893	-0.031357	-1.6643E-05	-0.31783	-0.0001687	-0.34919	-0.00018534	530.776547876195	36.833	0.35712	36.64	36.455	36.812	-0.193					20	8	3	0	0	0	0.027866	1	2886	2886		62.978	27.36	1	535300			11131	13974	7636	7652	12602	12602					0.011543579315684838
EILHSDPNL	9	Unmodified	_EILHSDPNL_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8184204101562	2	519.266739	1036.51892	0.0087433	4.5401E-06	3.5819	0.00186	3.5907	0.0018645	519.2685306246027	72.202	0.74486	72.202	71.869	72.614	0					24	18	2	0	0	0	0.02435	1	8764	8764		19.997	0	1	274220	+		11132	20901	7637	7653	12603	12603					0.002125622009543804
EILHSDPNL	9	Unmodified	_EILHSDPNL_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.266739	1036.51892	0.26601	0.00013813	2.8836	0.0014973	3.1496	0.0016355	519.2681880879131	72.231	0.69649	72.24	71.915	72.611	0.0097656	0.025824	-9.4136E-05	NaN	12.812	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280390	+		11133	20901	7637	7653							0.002125622009543804
EILINHDNL	9	Unmodified	_EILINHDNL_					0	0	0			REV__ENSG00000188266|ENST00000388988|HYKK	REV__ENSG00000188266|ENST00000388988|HYKK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7877197265625	2	540.787838	1079.56112	-0.40083	-0.00021677	-0.16092	-8.7026E-05	-0.56176	-0.00030379	540.7876366148058	46.64	1.017	46.64	46.378	47.395	0					78	27	4	0	0	0	0.17845	3	4618	4618;4640;4654		93.143	32.171	1	4513600	+		11134	28025	7638	7654	12604;12605;12606	12604					0.024525376093151863
EILINHDNL	9	Unmodified	_EILINHDNL_					0	0	0			REV__ENSG00000188266|ENST00000388988|HYKK	REV__ENSG00000188266|ENST00000388988|HYKK	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.787838	1079.56112	-0.39296	-0.00021251	-0.79374	-0.00042924	-1.1867	-0.00064175	540.7869534088775	46.99	1.0167	46.893	46.368	47.385	-0.096653	0.12352	-0.001187	NaN	93.143	55	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1087900	+		11135	28025	7638	7654							0.024525376093151863
EILINHDNL	9	Unmodified	_EILINHDNL_					0	0	0			REV__ENSG00000188266|ENST00000388988|HYKK	REV__ENSG00000188266|ENST00000388988|HYKK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.787838	1079.56112	-0.13596	-7.3523E-05	-0.33996	-0.00018385	-0.47592	-0.00025737	540.7875271072719	47.231	0.78543	46.961	46.452	47.238	-0.26939	0.19153	-0.00069617	NaN	93.143	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1267000	+		11136	28025	7638	7654							0.024525376093151863
EILINHDNL	9	Unmodified	_EILINHDNL_					0	0	0			REV__ENSG00000188266|ENST00000388988|HYKK	REV__ENSG00000188266|ENST00000388988|HYKK	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.787838	1079.56112	-1.1494	-0.00062156	-0.13835	-7.4816E-05	-1.2877	-0.00069637	540.7873377162857	47.049	0.93063	46.855	46.38	47.311	-0.19387	0.085497	-0.00047811	NaN	93.143	60	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1166900	+		11137	28025	7638	7654							0.024525376093151863
EILKEETEQK	10	Unmodified	_EILKEETEQK_					0	0	0			REV__CCDC138|p.E108K|1|0.21|ENSG00000163006|chr2:108791730-108791730|G/A|missense_variant	REV__CCDC138|p.E108K|1|0.21|ENSG00000163006|chr2:108791730-108791730|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.7095947265625	3	416.222359	1245.64525	-0.53404	-0.00022228	-4.4751	-0.0018627	-5.0092	-0.0020849	416.2203545353822	26.267	1.2154	26.103	25.922	27.138	-0.16331					46	31	2	0	0	0	0.03519	1	1294	1294		24.232	0	1	108630	+		11138	19254	7639	7655	12607	12607					0.03225023915547354
EILKILEEE	9	Unmodified	_EILKILEEE_					0	0	0			REV__ENSG00000120832|ENST00000240050|MTERF2	REV__ENSG00000120832|ENST00000240050|MTERF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.3123168945312	2	558.313354	1114.61216	-0.34806	-0.00019433	-2.2752	-0.0012703	-2.6232	-0.0014646	558.3120178642577	22.408	0.83513	22.408	22.152	22.987	0					47	17	4	0	0	0	0.80003	1	807	807		39.253	2.8061	1	1192200	+		11139	22564	7640	7656	12608	12608					0.059434418635419206
EILKIRFYAI	10	Unmodified	_EILKIRFYAI_					0	0	0			REV__ENSG00000256162|ENST00000541421|SMLR1	REV__ENSG00000256162|ENST00000541421|SMLR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5925598144531	3	422.592058	1264.75434	-0.52618	-0.00022236	2.0445	0.00086399	1.5183	0.00064163	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	1.1314	1	5153	5153		27.047	1.9213	1	14959000	+		11140	29076	7641	7657	12609	12609					0.13255699396404452
EILLEGVPL	9	Unmodified	_EILLEGVPL_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.29754638671875	2	491.794601	981.574648	-0.15145	-7.4485E-05	2.6727	0.0013144	2.5213	0.0012399	491.7958080246407	47.771	1.5597	47.495	46.483	48.043	-0.27598					128	42	5	0	0	0	0.78069	1	4644	4644		40.573	3.4135	1	5590000	+		11141	26976	7642	7658	12610	12610					0.08312395388577443
EILNGRQP	8	Unmodified	_EILNGRQP_					0	0	0		nc|ENSG00000171466|Q6V9R5-2|ZNF562;ENSG00000171466|ENST00000453372|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7966613769531	2	463.756341	925.498129	0.34194	0.00015857	-1.9073	-0.0008845	-1.5653	-0.00072593	463.7552054504993	32.32	0.49088	32.383	32.125	32.616	0.062885					21	12	2	0	0	0	0.027866	1	2186	2186		37.159	8.0096	1	90938			11142	8153	7643	7659	12611	12611					0.03240016611948704
EILNVRNI	8	Unmodified	_EILNVRNI_					0	0	0		ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.26202392578125	2	485.787641	969.56073	0.28557	0.00013872	-1.1426	-0.00055508	-0.85708	-0.00041636	485.78705368688804	47.147	1.1927	46.994	46.445	47.637	-0.15301					74	32	4	0	0	0	0.027866	1	4601	4601		31.955	7.7521	1	7224800			11143	15958	7644	7660	12612	12612					0.07473162680128098
EILPLFPPLC	10	Unmodified	_EILPLFPPLC_					0	0	0			REV__ENST00000561242.1_1_15:63353867-63354482:+|nuORF	REV__ENST00000561242.1_1_15:63353867-63354482:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.3323364257812	2	571.319928	1140.6253	-0.68501	-0.00039136	-0.68616	-0.00039201	-1.3712	-0.00078338	571.3196816049852	46.895	0.48682	46.895	46.659	47.146	0					22	12	3	0	0	0	0.03519	1	4653	4653		24.203	0	1	289610	+		11144	35162	7645	7661	12613	12613					0.06061601441933817
EILQTELGE	9	Unmodified	_EILQTELGE_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2669677734375	2	516.266404	1030.51826	-0.80704	-0.00041665	1.4589	0.00075316	0.65181	0.00033651	516.2671056406949	31.1	1.9277	31.169	30.04	31.967	0.068962					153	46	5	0	0	0	0.39228	1	1969	1969		66.429	2.8954	1	6164700			11145	4961	7646	7662	12614	12614					0.004217227612343777
EILQTTKSGP	10	Unmodified	_EILQTTKSGP_					0	0	0			REV__ENSG00000037474|ENST00000264670|NSUN2	REV__ENSG00000037474|ENST00000264670|NSUN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.280029296875	2	537.295496	1072.57644	-0.72254	-0.00038822	-0.75058	-0.00040328	-1.4731	-0.0007915	537.2951186227186	42.589	0.65031	42.357	42.155	42.806	-0.23186					23	16	2	0	0	0	0.03519	1	3817	3817		42.864	0	1	190330	+		11146	20069	7647	7663	12615	12615					0.04305404406522939
EILRLHLSQ	9	Unmodified	_EILRLHLSQ_					0	0	0		ENST00000526702.1_1_11:64805889-64807261:+|nuORF;nc|ENSG00000110025|Q9NRS6-2|SNX15;ENSG00000110025|ENST00000377244|SNX15	ENST00000526702.1_1_11:64805889-64807261:+|nuORF	ENST00000526702.1_1_11:64805889-64807261:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3047485351562	2	554.827298	1107.64004	-1.2427	-0.00068946	0.58459	0.00032435	-0.65806	-0.00036511	554.8275383093154	43.975	0.31853	43.831	43.675	43.994	-0.14471					14	8	2	0	0	0	0.0242	1	4133	4133		42.864	5.0528	1	305330			11147	3012	7648	7664	12616	12616					0.09052809634295045
EILRLHLSQ	9	Unmodified	_EILRLHLSQ_					0	0	0		ENST00000526702.1_1_11:64805889-64807261:+|nuORF;nc|ENSG00000110025|Q9NRS6-2|SNX15;ENSG00000110025|ENST00000377244|SNX15	ENST00000526702.1_1_11:64805889-64807261:+|nuORF	ENST00000526702.1_1_11:64805889-64807261:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.3055419921875	2	554.827298	1107.64004	-0.1262	-7.0021E-05	-0.2816	-0.00015624	-0.4078	-0.00022626	554.8269316018627	43.856	0.32961	43.886	43.7	44.029	0.030823					15	8	2	0	0	0	0.023842	1	4052	4052		77.318	31.345	1	268780			11148	3012	7648	7664	12617	12617					0.09052809634295045
EILRPIPAPG	10	Unmodified	_EILRPIPAPG_					0	0	0			REV__ENSG00000165972|ENST00000344280|CCDC38	REV__ENSG00000165972|ENST00000344280|CCDC38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8164672851562	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	1.0992	1	10954	10954		32.812	3.6629	1	3741200	+		11149	25952	7649	7665	12618	12618					0.09498308748334239
EILSVLRLA	9	Unmodified	_EILSVLRLA_					0	0	0		ENSG00000212807|ENST00000641810|OR2A42;ENSG00000221970|ENST00000641044|OR2A1;ENST00000479887.1_1_7:143947766-143948387:-|nuORF	ENSG00000212807|ENST00000641810|OR2A42	ENSG00000212807|ENST00000641810|OR2A42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29248046875	2	507.321317	1012.62808	-0.1987	-0.00010081	-0.30217	-0.0001533	-0.50087	-0.0002541	507.32097644749246	51.853	0.63503	51.853	51.6	52.236	0					35	17	3	0	0	0	0.024263	1	5569	5569		51.335	0	1	483780			11150	10483	7650	7666	12619	12619					0.12227192891089089
EILTDDIPW	9	Unmodified	_EILTDDIPW_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.G535Hfs*23|1|0.07|ENSG00000121101|chr17:58601899-58601900|-/AGTG|frameshift_variant	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.8174438476562	2	551.276772	1100.53899	-0.17493	-9.6437E-05	-1.5467	-0.00085268	-1.7217	-0.00094911	552.2765986548326	52.212	0.97189	52.028	51.705	52.677	-0.18404					44	24	3	0	0	0	0.024506	1	5442	5442		30.504	11.144	1	191870			11151	3855	7651	7667	12620	12620					-0.0072568685909573105
EILTKRTQ	8	Unmodified	_EILTKRTQ_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.78057861328125	2	494.792924	987.571294	0.15832	7.8335E-05	3.2698	0.0016179	3.4281	0.0016962	494.7944283305141	89.558	0.50121	89.574	89.342	89.843	0.015907					21	11	2	0	0	0	0.027866	1	11197	11197		37.812	4.9991	1	408940	+		11152	22693	7652	7668	12621	12621					0.07701145334567627
EILTWDLVPQ	10	Unmodified	_EILTWDLVPQ_					0	0	0		ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-2|RTN3;nc|ENSG00000133318|O95197-7|RTN3	ENSG00000133318|ENST00000377819|RTN3	ENSG00000133318|ENST00000377819|RTN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	607.7567138671875	2	607.326796	1212.63904	-0.32237	-0.00019578	4.1135	0.0024982	3.7911	0.0023024	607.3291045838338	52.45	1.8382	52.261	51.482	53.32	-0.18982					84	47	3	0	0	0	0.03519	1	5388	5388		62.107	22.855	1	413100			11153	4703	7653	7669	12622	12622					0.0412255047472172
EILVERTK	8	Unmodified	_EILVERTK_					0	0	0			REV__nc|ENSG00000099810|Q13126-7|MTAP	REV__nc|ENSG00000099810|Q13126-7|MTAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2871398925781	2	494.295299	986.576045	0.13256	6.5526E-05	-0.37946	-0.00018757	-0.2469	-0.00012204	494.29680066742606	67.736	0.65773	67.503	67.261	67.918	-0.23376					28	15	3	0	0	0	0.027866	1	7786	7786		27.882	4.8398	1	308400	+		11154	19286	7654	7670	12623	12623					0.08222029477326487
EILYLETLL	9	Unmodified	_EILYLETLL_					0	0	0			REV__ENSG00000184434|ENST00000380055|LRRC19	REV__ENSG00000184434|ENST00000380055|LRRC19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.3055419921875	2	553.820815	1105.62708	-0.37037	-0.00020512	-3.693	-0.0020453	-4.0634	-0.0022504	553.8195879747964	44.405	1.3588	44.442	43.528	44.887	0.0369					58	38	3	0	0	0	0.024405	1	4052	4052		44.117	14.967	1	1257700	+		11155	27669	7655	7671	12624	12624					0.07848933731543184
EILYTVAIIP	10	Unmodified	_EILYTVAIIP_					0	0	0		ENSG00000171942|ENST00000305899|OR10H2;ENSG00000172519|ENST00000642092|OR10H5;ENSG00000186723|ENST00000641419|OR10H1	ENSG00000171942|ENST00000305899|OR10H2	ENSG00000171942|ENST00000305899|OR10H2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3192749023438	2	566.336633	1130.65871	-1.1762	-0.0006661	-1.0083	-0.00057106	-2.1845	-0.0012372	566.3358896096772	57.352	0.55892	57.447	57.088	57.647	0.095306					23	14	3	0	0	0	0.03519	1	6318	6318		31.53	1.0262	1	1065500			11156	8221	7656	7672	12625	12625					0.09860926485498567
EIMKKPGP	8	Unmodified	_EIMKKPGP_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.26171875	2	450.254588	898.494624	-0.46414	-0.00020898	2.4215	0.0010903	1.9574	0.00088132	450.2554997640623	31.66	0.50981	31.507	31.232	31.742	-0.15231					22	12	2	0	0	0	0.027866	1	2065	2065		20.482	14.169	1	186960			11157	7347	7657	7673	12626	12626					0.041316305137456766
EIMQKKQHL	9	Unmodified	_EIMQKKQHL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.8209228515625	2	577.821158	1153.62776	0.25736	0.00014871	-0.87045	-0.00050297	-0.61309	-0.00035426	577.8206735186299	23.005	1.156	22.803	22.546	23.702	-0.20193					66	25	5	0	0	0	0.028071	4	858	858;868;880;894		143.11	43.732	1	3357500			11158	2053	7658	7674	12627;12628;12629;12630	12627					0.057094498996093535
EIMQKKQHL	9	Unmodified	_EIMQKKQHL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.8211669921875	2	577.821158	1153.62776	-0.89554	-0.00051746	0.24698	0.00014271	-0.64856	-0.00037475	577.8213020950443	23.086	0.91349	22.901	22.6	23.513	-0.18538					56	20	5	0	0	0	0.03849	4	879	858;867;879;895		134.81	38.62	1	3704200			11159	2053	7658	7674	12631;12632;12633;12634	12633					0.057094498996093535
EIMQKKQHL	9	Unmodified	_EIMQKKQHL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.82080078125	2	577.821158	1153.62776	1.018	0.00058823	-1.7784	-0.0010276	-0.76035	-0.00043934	577.8201446618012	23.11	0.7366	22.918	22.664	23.4	-0.19117					47	16	5	0	0	0	0.022311	4	849	841;849;861;876		147.69	53.687	1	3911300			11160	2053	7658	7674	12635;12636;12637;12638	12636					0.057094498996093535
EIMQKKQHL	9	Oxidation (M)	_EIM(Oxidation (M))QKKQHL_		EIM(1)QKKQHL		EIM(74)QKKQHL	0	0	1		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.818603515625	2	585.818615	1169.62268	1.3018	0.00076263	-1.4929	-0.00087458	-0.1911	-0.00011195	585.8177074786114	19.038	3.0515	18.805	18.483	21.534	-0.23345					108	61	4	0	0	0	0.31037	1	357	357		74.255	15.473	1	956800			11161	2053	7658	7675	12639	12639		74			0.04465146036977785
EIMTHVMTI	9	2 Oxidation (M)	_EIM(Oxidation (M))THVM(Oxidation (M))TI_		EIM(1)THVM(1)TI		EIM(71)THVM(71)TI	0	0	2			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7666625976562	2	553.76466	1105.51477	-0.043993	-2.4362E-05	3.7647	0.0020847	3.7207	0.0020604	553.7665459146367	54.489	1.0345	54.244	53.625	54.659	-0.2453					68	31	4	0	0	0	0.33245	1	5803	5803		71.296	9.1883	1	3206100	+		11162	20171	7659	7676	12640	12640		621;622			-0.033769866086004185
EIMTHVMTI	9	2 Oxidation (M)	_EIM(Oxidation (M))THVM(Oxidation (M))TI_					0	0	2			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	553.76466	1105.51477	-0.043993	-2.4362E-05	3.7647	0.0020847	3.7207	0.0020604	553.7665459146367	54.489	1.0345	54.244	53.625	54.659	-0.2453	0.03156	-9.6378E-05	NaN	71.296	68	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3206100	+		11163	20171	7659	7676				621;622			-0.033769866086004185
EIMTHVMTI	9	2 Oxidation (M)	_EIM(Oxidation (M))THVM(Oxidation (M))TI_					0	0	2			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.76466	1105.51477	0.40468	0.0002241	3.2023	0.0017733	3.607	0.0019974	553.7663649327432	54.376	0.90978	54.172	53.85	54.76	-0.20422	-0.040907	-0.00071923	NaN	71.296	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2582200	+		11164	20171	7659	7676				621;622			-0.033769866086004185
EINCERYY	8	Unmodified	_EINCERYY_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3003540039062	2	545.237124	1088.45969	-0.6976	-0.00038035	-2.0582	-0.0011222	-2.7558	-0.0015026	545.2359784899165	50.557	0.52514	50.408	50.132	50.657	-0.14916					26	15	2	0	0	0	0.027866	1	5240	5240		30.504	9.5567	1	331320			11165	6160	7660	7677	12641	12641					-0.08099657084881073
EINCERYY	8	Unmodified	_EINCERYY_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3001098632812	2	545.237124	1088.45969	-0.56728	-0.0003093	-2.2971	-0.0012525	-2.8644	-0.0015618	545.2357233136371	50.202	0.61958	50.283	50.022	50.642	0.08099					25	18	2	0	0	0	0.027866	1	5155	5155		38.806	19.446	1	307170			11166	6160	7660	7677	12642	12642					-0.08099657084881073
EINDALDTI	9	Unmodified	_EINDALDTI_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2742004394531	2	502.250754	1002.48696	0.017676	8.8776E-06	-2.4064	-0.0012086	-2.3887	-0.0011997	502.249430518822	34.729	0.60635	34.51	34.224	34.83	-0.21869					30	14	3	0	0	0	0.022832	1	2603	2603		104.75	19.387	1	566170	+		11167	24188	7661	7678	12643	12643					-0.014188502728529784
EINDALDTI	9	Unmodified	_EINDALDTI_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.250754	1002.48696	-0.50787	-0.00025508	-9.0222	-0.0045314	-9.5301	-0.0047865	502.2460358430377	34.854	0.66778	34.905	34.682	35.349	0.050255	0.13722	-0.0035465	NaN	104.75	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372540	+		11168	24188	7661	7678							-0.014188502728529784
EINDCIGGT	9	Unmodified	_EINDCIGGT_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.28399658203125	2	461.20275	920.390947	-0.47716	-0.00022007	3.4797	0.0016049	3.0026	0.0013848	461.204246048734	65.484	0.51344	65.211	65.055	65.568	-0.27282					22	14	2	0	0	0	0.024447	1	7713	7713		25.574	0	1	232930			11169	8158	7662	7679	12644	12644					-0.07243321384589763
EINEEGFKE	9	Unmodified	_EINEEGFKE_					0	0	0			REV__nc|ENSG00000198431|Q16881-2|TXNRD1	REV__nc|ENSG00000198431|Q16881-2|TXNRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.27685546875	2	547.753661	1093.49277	-0.53747	-0.0002944	2.4558	0.0013452	1.9183	0.0010508	547.7546166340054	28.96	0.519	28.791	28.598	29.117	-0.16897					12	11	2	0	0	0	0.024511	1	1759	1759		32.812	3.6629	1	39082	+		11170	34443	7663	7680	12645	12645					-0.050237517611549265
EINENLPARKT	11	Unmodified	_EINENLPARKT_					0	0	0		ENST00000507177.5_1_5:69321492-69322269:+|nuORF;ENST00000317633.13_2_5:70196496-70197687:+|nuORF	ENST00000507177.5_1_5:69321492-69322269:+|nuORF	ENST00000507177.5_1_5:69321492-69322269:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.7386169433594	3	428.901731	1283.68336	0.32673	0.00014014	3.8883	0.0016677	4.2151	0.0018078	428.90328650158045	39.511	0.8619	39.285	38.839	39.701	-0.2257					50	22	4	0	0	0	0.024746	1	3383	3383		21.032	0	1	288980			11171	12167	7664	7681	12646	12646					0.05286954620873985
EINKEHLL	8	Unmodified	_EINKEHLL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7951354980469	2	498.279649	994.544745	0.74462	0.00037103	-0.68393	-0.00034079	0.060686	3.0239E-05	498.2791951476378	58.625	1.0663	58.625	58.304	59.37	0					34	28	2	0	0	0	0.027866	1	6615	6615		60.972	2.19	1	2401200			11172	2338	7665	7682	12647	12647					0.04725456443236453
EINKEHLL	8	Unmodified	_EINKEHLL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.279649	994.544745	-0.40549	-0.00020205	0.19294	9.6136E-05	-0.21255	-0.00010591	498.27959825166755	58.831	0.54808	58.643	58.349	58.898	-0.18795	0.036205	0.00066698	NaN	60.972	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432510			11173	2338	7665	7682							0.04725456443236453
EINKEHLL	8	Unmodified	_EINKEHLL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.279649	994.544745	0.17227	8.584E-05	-0.55229	-0.0002752	-0.38002	-0.00018935	498.27930810855173	58.736	0.60357	58.555	58.308	58.911	-0.18134	-0.052376	-7.568E-05	NaN	60.972	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422640			11174	2338	7665	7682							0.04725456443236453
EINKEHLL	8	Unmodified	_EINKEHLL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.279649	994.544745	0.38	0.00018934	-0.3826	-0.00019064	-0.0025992	-1.2952E-06	498.27933023577	58.856	0.71526	58.614	58.341	59.056	-0.24165	0.0071999	9.343E-05	NaN	60.972	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363620			11175	2338	7665	7682							0.04725456443236453
EINKKGKAL	9	Unmodified	_EINKKGKAL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.81085205078125	2	500.811116	999.60768	0.099339	4.975E-05	-0.34894	-0.00017475	-0.2496	-0.000125	500.81079910245694	18.39	0.74299	18.187	17.965	18.708	-0.20371					36	14	5	0	0	0	0.039744	2	291	281;291		133.81	43.036	1	1230300			11176	3943	7666	7683	12648;12649	12649					0.10786022231286552
EINKKGKAL	9	Unmodified	_EINKKGKAL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.811116	999.60768	0.87563	0.00043853	-1.0889	-0.00054533	-0.21326	-0.0001068	500.8104625713597	18.377	0.83864	18.221	17.953	18.792	-0.15637	0.018585	-0.00017199	NaN	133.81	39	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370500			11177	3943	7666	7683							0.10786022231286552
EINKKGKAL	9	Unmodified	_EINKKGKAL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.811116	999.60768	2.8116	0.0014081	-2.0458	-0.0010246	0.76577	0.00038351	500.80970487110136	18.442	0.25041	18.199	18.024	18.274	-0.24256	-0.0029248	-0.0011305	NaN	133.81	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10626			11178	3943	7666	7683							0.10786022231286552
EINKLRFV	8	Unmodified	_EINKLRFV_					0	0	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8043212890625	2	509.805834	1017.59712	-0.17148	-8.7423E-05	-4.049	-0.0020642	-4.2205	-0.0021516	509.80368236575634	98.113	1.9328	98.113	97.771	99.704	0					58	44	2	0	0	0	1.0574	1	12504	12504		26.796	1.3459	1	902990	+		11179	21141	7667	7684	12650	12650					0.08902039576855714
EINKPPPPLVK	11	Unmodified	_EINKPPPPLVK_					0	0	0		ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.1874084472656	3	411.251813	1230.73361	-0.25613	-0.00010534	1.6079	0.00066126	1.3518	0.00055592	411.25243320210353	35.182	1.0088	34.969	34.642	35.651	-0.21246					77	25	4	0	0	0	0.024757	1	2749	2749		25.892	19.891	1	992410			11180	6548	7668	7685	12651	12651					0.1274710901668641
EINNRVRFLQT	11	Unmodified	_EINNRVRFLQT_					0	0	0		PDCD10|p.D123N|1|0.16|ENSG00000114209|chr3:167695624-167695624|C/T|missense_variant	PDCD10|p.D123N|1|0.16|ENSG00000114209|chr3:167695624-167695624|C/T|missense_variant	PDCD10|p.D123N|1|0.16|ENSG00000114209|chr3:167695624-167695624|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.8135070800781	3	463.924759	1388.75245	-0.37566	-0.00017428	-2.0674	-0.00095911	-2.443	-0.0011334	463.9240962146112	38.014	0.33764	37.835	37.665	38.002	-0.17929					15	9	2	0	0	0	0.024789	1	3125	3125		15.921	0	1	99466			11181	18954	7669	7686	12652	12652					0.07362038640462742
EINQTRDRL	9	Unmodified	_EINQTRDRL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.8297119140625	2	572.807094	1143.59963	-0.28788	-0.0001649	3.3276	0.0019061	3.0397	0.0017412	572.8088967491401	41.841	0.773	41.709	41.18	41.953	-0.13219					33	21	2	0	0	0	0.022832	1	3812	3812		82.241	0	1	497920			11182	3299	7670	7687	12653	12653					0.0335784324386168
EINRELSNL	9	Unmodified	_EINRELSNL_					0	0	0			REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.3330078125	2	544.290745	1086.56694	-0.72181	-0.00039287	4.2329	0.0023039	3.5111	0.001911	544.2929464731186	97.178	1.3965	97.178	96.836	98.233	0					63	31	3	0	0	0	0.024319	1	12369	12369		47.657	7.5992	1	822280	+		11183	24758	7671	7688	12654	12654					0.027116361209891693
EINSILVKV	9	Unmodified	_EINSILVKV_					0	0	0			REV__PREX1|p.F100I|1|0.18|ENSG00000124126|chr20:48745141-48745141|A/T|missense_variant	REV__PREX1|p.F100I|1|0.18|ENSG00000124126|chr20:48745141-48745141|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7666320800781	2	507.813325	1013.6121	-0.14837	-7.5343E-05	0.10061	5.109E-05	-0.047758	-2.4252E-05	507.8132800805294	66.039	0.81907	65.766	65.362	66.181	-0.27282					61	19	4	0	0	0	0.023655	1	7819	7819		69.628	3.1983	1	2774200	+		11184	37402	7672	7689	12655	12655					0.1058348665419544
EINSLKGLL	9	Unmodified	_EINSLKGLL_					0	0	0		nc|ENSG00000142655|O75381-2|PEX14;UBE4B-PEX14|1|fusion;ENSG00000142655|ENST00000356607|PEX14	nc|ENSG00000142655|O75381-2|PEX14	nc|ENSG00000142655|O75381-2|PEX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2748718261719	2	493.797675	985.580796	-0.51706	-0.00025532	-1.0372	-0.00051216	-1.5542	-0.00076748	493.79701601114726	62.482	0.39756	62.545	62.331	62.728	0.062767					17	9	2	0	0	0	0.024288	1	7184	7184		36.447	6.129	1	1828300			11185	5581	7673	7690	12656	12656					0.08742913620108084
EIPGTIKSSSD	11	Unmodified	_EIPGTIKSSSD_					0	0	0		ENSG00000205592|ENST00000454784|MUC19;nc|ENSG00000205592|Q7Z5P9-2|MUC19	ENSG00000205592|ENST00000454784|MUC19	ENSG00000205592|ENST00000454784|MUC19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3296508789062	2	567.287868	1132.56118	0.24393	0.00013838	1.6353	0.00092768	1.8792	0.0010661	567.2896499047253	91.176	0.45869	91.037	90.943	91.402	-0.13941					11	10	2	0	0	0	0.024765	1	11160	11160		41.427	12.257	1	69497			11186	10435	7674	7691	12657	12657					0.0002049281868039543
EIPKKKPF	8	Unmodified	_EIPKKKPF_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7657775878906	2	493.805303	985.596052	-0.8942	-0.00044156	-3.8051	-0.001879	-4.6993	-0.0023206	493.80335093871423	40.623	0.60032	40.474	40.294	40.894	-0.1497					25	15	2	0	0	0	0.027866	1	3560	3560		38.806	12.01	1	613690	+		11187	27409	7675	7692	12658	12658					0.10267825207949954
EIPKRIKKA	9	Unmodified	_EIPKRIKKA_					0	0	0		nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.80908203125	2	541.855858	1081.69716	-0.59832	-0.0003242	0.2659	0.00014408	-0.33242	-0.00018012	541.8557631814828	52.206	0.37168	52.059	51.915	52.287	-0.14735					13	9	3	0	0	0	0.024511	1	5571	5571		32.812	18.675	1	98940			11188	5219	7676	7693	12659	12659					0.15958276910669156
EIPKSRGVL	9	Unmodified	_EIPKSRGVL_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.9019470214844	2	499.803291	997.59203	-0.9784	-0.00048901	3.4587	0.0017286	2.4803	0.0012396	499.8029738756472	43.888	0.84664	43.743	43.316	44.162	-0.14471					91	23	6	0	0	0	0.024381	1	4147	4147		37.159	0	1	5469700			11189	6024	7677	7694	12660	12660					0.0931373571424956
EIPKSRGVL	9	Unmodified	_EIPKSRGVL_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.90203857421875	2	499.803291	997.59203	-0.61207	-0.00030592	-0.83222	-0.00041595	-1.4443	-0.00072186	499.8028279480236	43.84	0.41611	43.736	43.544	43.96	-0.10468					22	10	3	0	0	0	0.02435	1	4073	4073		42.396	15.703	1	288090			11190	6024	7677	7694	12661	12661					0.0931373571424956
EIPKSRGVL	9	Unmodified	_EIPKSRGVL_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.9014892578125	2	499.803291	997.59203	-1.0571	-0.00052832	0.12278	6.1366E-05	-0.93428	-0.00046696	499.8031918309184	44.003	0.56203	43.758	43.448	44.01	-0.2444					22	14	2	0	0	0	0.024021	1	4090	4090		58.782	19.529	1	320520			11191	6024	7677	7694	12662	12662					0.0931373571424956
EIPLDLRR	8	Unmodified	_EIPLDLRR_					0	0	0			REV__ENSG00000171793|ENST00000650070|CTPS1	REV__ENSG00000171793|ENST00000650070|CTPS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.78814697265625	2	506.300916	1010.58728	-1.18	-0.00059743	1.927	0.00097566	0.74704	0.00037823	506.3021069451319	49.03	0.32879	49.104	48.987	49.316	0.074196					12	8	2	0	0	0	0.027866	1	4981	4981		38.806	14.603	1	327170			11192	26600	7678	7695	12663	12663					0.08240851571486019
EIPLQLVTV	9	Unmodified	_EIPLQLVTV_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3;ENST00000465379.1_1_2:174774671-174778005:-|nuORF	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2853698730469	2	506.307875	1010.6012	-0.45622	-0.00023099	-2.5856	-0.0013091	-3.0419	-0.0015401	506.3064717209636	30.729	0.41675	30.803	30.586	31.002	0.074314					16	9	2	0	0	0	0.024319	1	1933	1933		39.253	2.0937	1	108120			11193	8314	7679	7696	12664	12664					0.09632084279905939
EIPNDQLY	8	Unmodified	_EIPNDQLY_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.2834777832031	2	496.24019	990.465826	-1.0374	-0.00051481	0.18576	9.2179E-05	-0.85167	-0.00042263	496.241663317818	43.79	0.21643	43.571	43.455	43.672	-0.21938					6	5	2	0	0	0	0.027866	1	4037	4037		31.955	4.0726	1	79740	+		11194	27660	7680	7697	12665	12665					-0.029788155817186635
EIPNKINLNY	10	Unmodified	_EIPNKINLNY_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.5874938964844	3	406.555672	1216.64519	-0.95468	-0.00038813	3.7642	0.0015304	2.8096	0.0011422	406.89174939972037	25.744	0.49261	25.573	25.365	25.857	-0.17151					23	11	3	0	0	0	0.03519	1	1217	1217		38.754	8.1847	1	64980	+		11195	34932	7681	7698	12666	12666					0.045530687062409925
EIPPAGPQN	9	Unmodified	_EIPPAGPQN_					0	0	0		ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.73492431640625	2	461.735074	921.455596	0.2854	0.00013178	-1.6735	-0.00077273	-1.3881	-0.00064096	461.73435310986144	103.7	0.78088	103.58	103.28	104.06	-0.12724					36	18	3	0	0	0	0.96322	1	12895	12895		27.882	2.4321	1	247320			11196	17110	7682	7699	12667	12667					-0.008273785162828062
EIPPNIPSV	9	Unmodified	_EIPPNIPSV_					0	0	0		ENSG00000189139|ENST00000340446|FSCB	ENSG00000189139|ENST00000340446|FSCB	ENSG00000189139|ENST00000340446|FSCB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.6460876464844	2	483.26875	964.522947	0.039236	1.8962E-05	-0.12179	-5.8857E-05	-0.082554	-3.9896E-05	483.26825313820717	48.781	1.4748	48.599	47.678	49.153	-0.18206					57	39	3	0	0	0	0.024477	1	4776	4776		14.865	0	1	347130			11197	9794	7683	7700	12668	12668					0.03926651694666816
EIPRPFSP	8	Unmodified	_EIPRPFSP_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2950439453125	2	471.75581	941.497067	0.3623	0.00017092	3.3394	0.0015754	3.7017	0.0017463	471.757255677808	54.733	0.69942	54.831	54.558	55.257	0.098015					43	19	3	0	0	0	0.027866	1	5984	5984		49.442	10.189	1	2027900			11198	6576	7684	7701	12669	12669					0.023978022430469537
EIPSQEELL	9	Unmodified	_EIPSQEELL_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.81591796875	2	529.274229	1056.53391	0.59337	0.00031406	4.3734	0.0023148	4.9668	0.0026288	529.276485933615	71.5	0.65056	71.294	71.007	71.658	-0.20613					22	15	2	0	0	0	0.024323	1	8311	8311		27.882	0	1	174010	+		11199	21945	7685	7702	12670	12670					0.007900092783074797
EIPSYGFL	8	Unmodified	_EIPSYGFL_					0	0	0		nc|ENSG00000087589|Q9NQ75-2|CASS4;ENST00000497244.1_1_20:54987478-55028248:+|nuORF;ENSG00000087589|ENST00000679887|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7373962402344	2	463.236919	924.459284	0.90255	0.0004181	4.0911	0.0018951	4.9937	0.0023132	463.2384691067488	72.747	1.1917	72.757	71.953	73.145	0.0096512					52	29	3	0	0	0	0.027866	1	8781	8781		44.531	7.5026	1	796800			11200	1855	7686	7703	12671	12671					-0.005967087424210149
EIPYKGKDL	9	Unmodified	_EIPYKGKDL_					0	0	0		ENSG00000206073|ENST00000341074|SERPINB4;ENSG00000057149|ENST00000283752|SERPINB3	ENSG00000206073|ENST00000341074|SERPINB4	ENSG00000206073|ENST00000341074|SERPINB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.8167114257812	2	531.795132	1061.57571	-0.033244	-1.7679E-05	0.14582	7.7548E-05	0.11258	5.9868E-05	531.7952896535702	88.61	0.58768	88.472	88.274	88.862	-0.13744					18	13	2	0	0	0	0.024261	1	10809	10809		37.812	3.639	1	119720			11201	1202	7687	7704	12672	12672					0.04738609757487211
EIPYQAEVL	9	Unmodified	_EIPYQAEVL_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	531.279315	1060.54408	0.045995	2.4436E-05	3.1992	0.0016997	3.2452	0.0017241	531.2803582482335	86.795	0.92831	86.817	86.547	87.476	0.021263					27	21	2	0	0	0	0.024367	1	10877	10877		44.377	5.1244	1	114910			11202	1562	7688	7705	12673	12673					0.01622617003522464
EIQDIYENS	9	Unmodified	_EIQDIYENS_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000476955.5_1_22:38245435-38266306:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.289306640625	2	555.751118	1109.48768	-0.23761	-0.00013205	3.6228	0.0020134	3.3852	0.0018813	555.7531490059481	66.989	0.57167	66.989	66.714	67.285	0					20	13	2	0	0	0	0.024456	1	8017	8017		21.686	0	1	257690			11203	2139	7689	7706	12674	12674					-0.06268055623809232
EIQFHSDPL	9	Unmodified	_EIQFHSDPL_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.80908203125	2	543.266739	1084.51892	-0.39969	-0.00021714	-1.0188	-0.00055346	-1.4184	-0.00077059	543.2661047912619	52.429	0.27061	52.282	52.095	52.366	-0.14723					10	6	2	0	0	0	0.024541	1	5571	5571		34.173	7.4796	1	85803			11204	8135	7690	7707	12675	12675					-0.019954377990416106
EIQGNKYV	8	Unmodified	_EIQGNKYV_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.9609680175781	2	475.750724	949.486896	2.0082	0.0009554	-1.7686	-0.0008414	0.23962	0.000114	475.7494598430068	63.742	0.35588	63.793	63.589	63.945	0.051353					13	9	2	0	0	0	0.027866	1	7371	7371		16.473	4.2663	1	172510	+		11205	25566	7691	7708	12676	12676					0.010131945178159185
EIQGYVMEALL	11	Unmodified	_EIQGYVMEALL_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	633.3693237304688	2	633.325939	1264.63732	0.043514	2.7558E-05	0.38708	0.00024515	0.43059	0.00027271	633.3260223253462	95.932	2.6772	95.932	95.05	97.727	0					123	61	3	0	0	0	0.024812	1	12338	12338		58.23	19.476	1	238030			11206	1519	7692	7709	12677	12677					0.015591733944575026
EIQIHHRSL	9	Unmodified	_EIQIHHRSL_					0	0	0			REV__nc|ENSG00000115459|Q96FG2-2|ELMOD3	REV__nc|ENSG00000115459|Q96FG2-2|ELMOD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3292846679688	2	566.814722	1131.61489	-0.46193	-0.00026183	-0.88784	-0.00050324	-1.3498	-0.00076507	567.3153953509909	90.984	1.1709	90.972	90.533	91.704	-0.012383					38	27	3	0	0	0	0.024367	1	11427	11427		36.447	0	1	406010	+		11207	36584	7693	7710	12678	12678					0.05434754831708233
EIQKYWVM	8	Unmodified	_EIQKYWVM_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2413330078125	2	548.778428	1095.5423	0.070025	3.8428E-05	-2.3117	-0.0012686	-2.2417	-0.0012302	548.7773076985166	49.694	0.52289	49.513	49.23	49.752	-0.18071					21	13	2	0	0	0	0.027866	1	4999	4999		14.664	0	1	436400	+		11208	22782	7694	7711	12679	12679					-0.0016471528606416541
EIQLFQTPN	9	Unmodified	_EIQLFQTPN_					0	0	0			REV__ENSG00000120328|ENST00000239450|PCDHB12;REV__ENSG00000197479|ENST00000354757|PCDHB11	REV__ENSG00000120328|ENST00000239450|PCDHB12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.282389	1088.55022	-0.29108	-0.00015872	1.8249	0.00099511	1.5339	0.00083639	545.2832657533606	89.824	0.426	89.685	89.532	89.958	-0.13824					12	9	2	0	0	0	0.024456	1	10956	10956		42.864	4.0581	1	43928	+		11209	22526;28308	7695	7712	12680	12680					0.009491352350551097
EIQLLPLNRR	10	Unmodified	_EIQLLPLNRR_					0	0	0			REV__ENSG00000178694|ENST00000314622|NSUN3	REV__ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	626.3797607421875	2	626.380229	1250.7459	-0.014204	-8.8969E-06	-0.80991	-0.00050731	-0.82411	-0.00051621	626.3796706228852	104.33	1.1031	104.33	103.94	105.04	0					82	30	5	0	0	0	1.1311	1	13371	13371		30.318	2.4355	1	2455700	+		11210	27199	7696	7713	12681	12681					0.1305614547973164
EIQQKQEAY	9	Unmodified	_EIQQKQEAY_					0	0	0			REV__ENSG00000150456|ENST00000382758|EEF1AKMT1	REV__ENSG00000150456|ENST00000382758|EEF1AKMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2675170898438	2	568.782753	1135.55095	-0.12026	-6.8402E-05	0.94166	0.0005356	0.8214	0.0004672	568.78261937767	65.926	0.49977	65.685	65.289	65.789	-0.24145					17	11	2	0	0	0	0.024436	1	7485	7485		38.806	10.924	1	134050	+		11211	24717	7697	7714	12682	12682					-0.011400701159118398
EIQQYQNQ	8	Unmodified	_EIQQYQNQ_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2;ENSG00000115904|ENST00000402219|SOS1	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.7568359375	2	525.74617	1049.47779	-0.24118	-0.0001268	2.2221	0.0011683	1.981	0.0010415	525.7461811864966	34.906	0.5958	34.691	34.429	35.024	-0.21555					40	14	4	0	0	0	0.027866	1	2611	2611		21.96	0	1	502750			11212	2208	7698	7715	12683	12683					-0.04497198838521399
EIQSEEQVL	9	Unmodified	_EIQSEEQVL_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2970581054688	2	537.769311	1073.52407	0.61521	0.00033084	4.4769	0.0024076	5.0922	0.0027384	537.772656353427	59.754	0.77248	59.754	59.37	60.143	0					24	20	2	0	0	0	0.024257	1	6813	6813		67.494	3.2864	1	200210	+		11213	26976	7699	7716	12684	12684					-0.009751787270943169
EIQSFNAVLFV	11	Unmodified	_EIQSFNAVLFV_					0	0	0			REV__nc|ENSG00000132561|O00339-3|MATN2	REV__nc|ENSG00000132561|O00339-3|MATN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	633.3690185546875	2	633.840071	1265.66559	-0.37288	-0.00023635	1.9623	0.0012438	1.5894	0.0010074	633.8410492546476	94.353	0.24167	94.206	94.086	94.328	-0.14771					6	5	2	0	0	0	0.02475	1	11629	11629		35.152	18.435	1	31769	+		11214	23292	7700	7717	12685	12685					0.04338239366029484
EIQTHTFQI	9	Unmodified	_EIQTHTFQI_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.2649536132812	2	558.787838	1115.56112	0.012909	7.2137E-06	-2.4715	-0.001381	-2.4586	-0.0013738	559.288580446708	83.379	0.89687	83.289	82.872	83.769	-0.090454					30	20	2	0	0	0	0.024288	1	10348	10348		62.107	5.3864	1	107100	+		11215	19998	7701	7718	12686	12686					0.007965376093125087
EIQVVLVEN	9	Unmodified	_EIQVVLVEN_					0	0	0		ENST00000541086.5_1_14:103389974-103397014:+|nuORF;ENSG00000166126|ENST00000299155|AMN;ENST00000558590.1_1_14:103395319-103397951:+|nuORF	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7935180664062	2	521.792589	1041.57063	-1.0637	-0.00055501	1.0817	0.0005644	0.017995	9.3896E-06	521.7930815428471	44.999	0.92319	44.999	44.657	45.58	0					61	26	4	0	0	0	0.48817	1	4347	4347		60.118	0.18749	1	2635400			11216	7505	7702	7719	12687	12687					0.051503058948810576
EIQYGGRVT	9	Unmodified	_EIQYGGRVT_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.3273620605469	2	511.766906	1021.51926	0.41633	0.00021307	-0.36259	-0.00018556	0.053747	2.7506E-05	511.7664887655981	95.946	2.6306	95.953	94.917	97.547	0.0065002					101	60	2	0	0	0	0.024367	1	12240	12240		44.377	3.599	1	190700			11217	1059	7703	7720	12688	12688					0.009359819208270892
EIQYHACLI	9	Unmodified	_EIQYHACLI_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2755737304688	2	545.273509	1088.53247	-0.96677	-0.00052716	2.5394	0.0013847	1.5727	0.00085753	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.70186	1	9800	9800		45.952	8.1404	1	52905000			11218	11074	7704	7721	12689	12689					-0.008259032914565978
EIRAAEARS	9	Unmodified	_EIRAAEARS_					0	0	0			REV__ENSG00000013364|ENST00000357402|MVP	REV__ENSG00000013364|ENST00000357402|MVP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2944641113281	2	501.76998	1001.52541	-0.18817	-9.4421E-05	-0.76986	-0.00038629	-0.95804	-0.00048071	501.7713644079989	54.046	0.24312	53.899	53.711	53.954	-0.14723					11	6	2	0	0	0	0.024344	1	5853	5853		54.776	1.8396	1	110850	+		11219	19954	7705	7722	12690	12690					0.024705001523329884
EIRAMLQTP	9	Unmodified	_EIRAMLQTP_					0	0	0			REV__ENSG00000010270|ENST00000009041|STARD3NL	REV__ENSG00000010270|ENST00000009041|STARD3NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.78564453125	2	529.786784	1057.55902	-0.28747	-0.0001523	1.4444	0.00076521	1.1569	0.00061292	529.7876724361738	52.924	0.61348	53.02	52.868	53.481	0.095665					25	16	2	0	0	0	0.023817	1	5623	5623		51.335	0	1	238450	+		11220	19900	7706	7723	12691	12691					0.03253785599872572
EIRDKIHA	8	Unmodified	_EIRDKIHA_					0	0	0			REV__nc|ENSG00000138463|Q96SL1-2|SLC49A4;REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2665710449219	2	491.277441	980.540328	1.4592	0.00071686	-1.5411	-0.0007571	-0.081897	-4.0234E-05	491.2765659253879	37.073	0.53238	37.073	36.846	37.379	0					23	13	2	0	0	0	0.027866	1	2990	2990		60.972	0	1	585460	+		11221	33339;23859	7707	7724	12692	12692					0.04927992020327565
EIRDKIHA	8	Unmodified	_EIRDKIHA_					0	0	0			REV__nc|ENSG00000138463|Q96SL1-2|SLC49A4;REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2668762207031	2	491.277441	980.540328	0.2121	0.0001042	-0.26496	-0.00013017	-0.052866	-2.5972E-05	491.2772160234604	36.948	0.49894	36.885	36.628	37.127	-0.063385					21	12	2	0	0	0	0.027866	1	2965	2965		99.375	46.438	1	636510	+		11222	33339;23859	7707	7724	12693	12693					0.04927992020327565
EIRFTPFA	8	Unmodified	_EIRFTPFA_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.3137512207031	2	490.763635	979.512717	-0.30575	-0.00015005	-3.31	-0.0016245	-3.6158	-0.0017745	490.76118791521566	29.065	0.30185	28.892	28.723	29.025	-0.17258					10	6	2	0	0	0	0.027866	1	1737	1737		50.025	0	1	63525			11223	5232	7708	7725	12694	12694					0.022140887600926362
EIRGLAICT	9	Unmodified	_EIRGLAICT_					0	0	0		MTOR|p.E709G|1|0.26|ENSG00000198793|chr1:11237925-11237925|T/C|missense_variant	MTOR|p.E709G|1|0.26|ENSG00000198793|chr1:11237925-11237925|T/C|missense_variant	MTOR|p.E709G|1|0.26|ENSG00000198793|chr1:11237925-11237925|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.29327392578125	2	488.268227	974.521901	-0.38314	-0.00018707	0.83048	0.0004055	0.44734	0.00021842	488.2686510821627	89.852	0.79443	89.724	89.37	90.165	-0.12775					44	18	3	0	0	0	0.024405	1	10998	10998		14.865	0	1	343470			11224	17999	7709	7726	12695	12695					0.03362114054118592
EIRIFTASD	9	Unmodified	_EIRIFTASD_					0	0	0			REV__ENSG00000177692|ENST00000381947|DNAJC28	REV__ENSG00000177692|ENST00000381947|DNAJC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.2645263671875	2	526.274564	1050.53457	-0.11884	-6.2543E-05	-1.133	-0.00059626	-1.2518	-0.00065881	526.2741397628046	48.428	0.67889	48.495	48.191	48.87	0.066795					52	18	4	0	0	0	0.024405	1	4825	4825		35.618	0	1	961120	+		11225	27138	7710	7727	12696	12696					0.011328487180207958
EIRKIALL	8	Unmodified	_EIRKIALL_					0	0	0			REV__ENST00000296220.5_1_3:125248114-125248261:-|nuORF	REV__ENST00000296220.5_1_3:125248114-125248261:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.7591552734375	2	478.318577	954.622602	-0.75169	-0.00035955	1.3812	0.00066065	0.6295	0.0003011	478.3187236830102	38.659	0.43234	38.438	38.221	38.653	-0.22149					21	10	3	0	0	0	0.027866	1	3181	3181		40.573	1.7665	1	129500	+		11226	29990	7711	7728	12697	12697					0.14347514099279124
EIRKVVQSL	9	Unmodified	_EIRKVVQSL_					0	0	0		nc|ENSG00000211460|Q15631-2|TSN;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN;ENST00000483698.5_1_2:122513280-122515022:+|nuORF	nc|ENSG00000211460|Q15631-2|TSN	nc|ENSG00000211460|Q15631-2|TSN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3297729492188	2	536.329673	1070.64479	-0.82457	-0.00044224	0.241	0.00012926	-0.58357	-0.00031298	536.3296845615695	40.312	1.1506	40.162	39.896	41.046	-0.1497					57	30	4	0	0	0	0.45795	1	3474	3474		62.107	8.756	1	2901500			11227	10478	7712	7729	12698	12698					0.1122969377706795
EIRLDRTR	8	Unmodified	_EIRLDRTR_					0	0	0			REV__ENST00000316626.5_2_3:119666176-119720948:-|nuORF	REV__ENST00000316626.5_2_3:119666176-119720948:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2344360351562	2	529.806897	1057.59924	0.39762	0.00021066	1.6084	0.00085214	2.006	0.0010628	529.8079028668583	67.55	0.66856	67.295	66.952	67.62	-0.25516					19	12	2	0	0	0	0.027866	1	7738	7738		34.173	6.2903	1	259890	+		11228	30284	7713	7730	12699	12699					0.07274468314653859
EIRLEVAG	8	Unmodified	_EIRLEVAG_					0	0	0			REV__nc|ENSG00000123143|Q16512-3|PKN1	REV__nc|ENSG00000123143|Q16512-3|PKN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2921142578125	2	443.753267	885.491981	1.3134	0.00058283	-2.2453	-0.00099634	-0.93185	-0.00041351	443.7520080549648	37.094	0.60411	37.094	36.846	37.45	0					23	15	2	0	0	0	0.027866	1	2963	2963		65.803	0	1	132800	+		11229	22680	7714	7731	12700	12700					0.04465498380432109
EIRLPIFTP	9	Unmodified	_EIRLPIFTP_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2;ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.2910766601562	2	543.321317	1084.62808	-0.5867	-0.00031876	-1.8128	-0.00098493	-2.3995	-0.0013037	543.3202235908495	54.358	0.4565	54.211	54.054	54.511	-0.14723					15	12	2	0	0	0	0.024405	1	5896	5896		44.117	0	1	154380			11230	7659	7715	7732	12701	12701					0.08915192891095103
EIRLPIFTP	9	Unmodified	_EIRLPIFTP_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2;ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.321317	1084.62808	-0.2402	-0.0001305	-3.7075	-0.0020144	-3.9477	-0.0021449	543.3190883522474	54.584	0.48325	54.346	54.111	54.594	-0.23738	0.055096	-0.00026464	NaN	45.972	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772910			11231	7659	7715	7732							0.08915192891095103
EIRLPIFTP	9	Unmodified	_EIRLPIFTP_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2;ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.321317	1084.62808	-0.033427	-1.8162E-05	-3.1627	-0.0017184	-3.1962	-0.0017365	543.319088040267	54.522	0.48625	54.316	54.051	54.538	-0.20613	0.025149	0.00032732	NaN	45.972	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	723480			11232	7659	7715	7732							0.08915192891095103
EIRMKKSYYI	10	Unmodified	_EIRMKKSYYI_					0	0	0			REV__ENST00000380629.6_1_8:26270343-26270526:+|nuORF	REV__ENST00000380629.6_1_8:26270343-26270526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2922668457031	3	444.244441	1329.71149	0.091357	4.0585E-05	3.5347	0.0015703	3.6261	0.0016109	444.24645541345745	36.778	1.0448	36.715	36.046	37.091	-0.063389					55	27	3	0	0	0	0.03519	1	2971	2971		40.058	4.88	1	827380	+		11233	31486	7716	7733	12702	12702					0.059825612766644554
EIRNVNGH	8	Unmodified	_EIRNVNGH_					0	0	0		ENST00000460895.5_1_3:134498709-134670235:+|nuORF	ENST00000460895.5_1_3:134498709-134670235:+|nuORF	ENST00000460895.5_1_3:134498709-134670235:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.8158264160156	2	469.743765	937.472977	-1.2953	-0.00060846	4.3816	0.0020582	3.0863	0.0014498	469.74576615067457	44.131	0.43242	43.912	43.709	44.142	-0.21939					21	11	3	0	0	0	0.027866	1	4093	4093		37.159	0	1	429020			11234	14667	7717	7734	12703	12703					0.0017396180938931138
EIRQKNLSL	9	Unmodified	_EIRQKNLSL_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.8244018554688	2	550.824755	1099.63496	-0.32294	-0.00017788	0.2557	0.00014085	-0.067239	-3.7037E-05	550.8247959769899	36.466	0.88967	36.261	35.987	36.877	-0.20518					58	22	4	0	0	0	0.077175	1	2857	2857		118.74	10.656	1	2883000			11235	2313	7718	7735	12704	12704					0.0891250577167284
EIRQKNLSL	9	Unmodified	_EIRQKNLSL_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8245849609375	2	550.824755	1099.63496	0.10722	5.9058E-05	-0.22342	-0.00012306	-0.1162	-6.4006E-05	550.8245858771628	36.478	0.86853	36.261	35.981	36.849	-0.21661					54	21	5	0	0	0	0.12914	2	2854	2854;2867		104.06	10.875	1	2788000			11236	2313	7718	7735	12705;12706	12705					0.0891250577167284
EIRQKNLSL	9	Unmodified	_EIRQKNLSL_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8246459960938	2	550.824755	1099.63496	1.4625	0.00080559	-1.6656	-0.00091745	-0.20307	-0.00011186	550.8237737140369	36.428	0.87354	36.229	35.943	36.817	-0.19829					60	21	4	0	0	0	0.12914	2	2843	2833;2843		104.06	6.0219	1	2607800			11237	2313	7718	7735	12707;12708	12708					0.0891250577167284
EIRRQLPAET	10	Unmodified	_EIRRQLPAET_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	3	404.894688	1211.66223	-0.86586	-0.00035058	-2.2142	-0.00089651	-3.08	-0.0012471	404.8946099721458	26.701	0.20306	26.537	26.419	26.622	-0.16331					8	4	2	0	0	0	0.03519	1	1389	1389		14.086	0	1	35920			11238	9482	7719	7736	12709	12709					0.06486989312043079
EIRSVIEAL	9	Unmodified	_EIRSVIEAL_					0	0	0			REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6;REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2991943359375	2	515.300581	1028.58661	-1.2699	-0.00065438	-0.024266	-1.2504E-05	-1.2942	-0.00066688	515.3004118584015	62.261	0.84915	62.261	61.682	62.531	0					40	25	2	0	0	0	0.34489	1	7251	7251		69.628	5.4204	1	5983200	+		11239	23131;20047	7720	7737	12710	12710					0.07346012131779389
EIRSVKQK	8	Unmodified	_EIRSVKQK_					0	0	0			REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2870178222656	2	494.300916	986.587279	0.31221	0.00015432	3.5837	0.0017714	3.8959	0.0019257	494.3024616844004	67.615	0.42368	67.36	67.073	67.497	-0.25516					20	9	3	0	0	0	0.027866	1	7784	7784		34.173	0	1	311280	+		11240	25377	7721	7738	12711	12711					0.09344851571484014
EIRTLSDF	8	Unmodified	_EIRTLSDF_					0	0	0			REV__ENSG00000214842|ENST00000399080|RAD51AP2	REV__ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.74322509765625	2	490.756007	979.497461	-0.26822	-0.00013163	-0.39493	-0.00019381	-0.66315	-0.00032544	490.754941442959	31.482	0.2016	31.494	31.382	31.583	0.011799					8	4	3	0	0	0	0.027866	1	2079	2079		24.203	0	1	53960	+		11241	28789	7722	7739	12712	12712					0.006891771722507656
EIRTTTILS	9	Unmodified	_EIRTTTILS_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.29736328125	2	517.298039	1032.58152	0.29607	0.00015316	1.732	0.00089594	2.028	0.0010491	517.7996333447222	102.59	1.2327	102.42	101.6	102.84	-0.17178					43	29	2	0	0	0	0.024288	1	12731	12731		52.937	13.684	1	119040			11242	624	7723	7740	12713	12713					0.06653708269141134
EIRVKTNL	8	Unmodified	_EIRVKTNL_					0	0	0		nc|ENSG00000112335|O60493-3|SNX3;ENSG00000112335|ENST00000230085|SNX3	nc|ENSG00000112335|O60493-3|SNX3	nc|ENSG00000112335|O60493-3|SNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7953796386719	2	486.795466	971.57638	-0.039445	-1.9202E-05	-0.209	-0.00010174	-0.24844	-0.00012094	486.79529995928175	36.715	0.85931	36.511	36.244	37.103	-0.20359					40	21	3	0	0	0	0.34573	2	2894	2894;2905		104.75	11.551	1	1952400			11243	3203	7724	7741	12714;12715	12714					0.08945449197187827
EIRVKTNL	8	Unmodified	_EIRVKTNL_					0	0	0		nc|ENSG00000112335|O60493-3|SNX3;ENSG00000112335|ENST00000230085|SNX3	nc|ENSG00000112335|O60493-3|SNX3	nc|ENSG00000112335|O60493-3|SNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.79510498046875	2	486.795466	971.57638	-0.22818	-0.00011108	-0.001544	-7.5161E-07	-0.22972	-0.00011183	486.7954234826013	36.763	0.83303	36.546	36.245	37.078	-0.21661					40	20	3	0	0	0	0.47727	2	2897	2897;2911		87.696	8.2894	1	1739100			11244	3203	7724	7741	12716;12717	12716					0.08945449197187827
EIRVKTNL	8	Unmodified	_EIRVKTNL_					0	0	0		nc|ENSG00000112335|O60493-3|SNX3;ENSG00000112335|ENST00000230085|SNX3	nc|ENSG00000112335|O60493-3|SNX3	nc|ENSG00000112335|O60493-3|SNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7948303222656	2	486.795466	971.57638	1.643	0.00079981	-1.9521	-0.00095029	-0.30913	-0.00015048	486.7944485701564	36.719	0.83484	36.51	36.24	37.075	-0.2092					40	20	3	0	0	0	0.71063	1	2880	2880		66.429	5.4573	1	1898100			11245	3203	7724	7741	12718	12718					0.08945449197187827
EIRVPPVVP	9	Unmodified	_EIRVPPVVP_					0	0	0		ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7820129394531	2	503.30821	1004.60187	-0.028436	-1.4312E-05	-0.71685	-0.0003608	-0.74529	-0.00037511	503.30792580824885	47.595	0.60322	47.442	47.161	47.764	-0.15301					55	17	4	0	0	0	0.024405	1	4778	4778		20.947	0	1	1038800			11246	3746	7725	7742	12719	12719					0.09974923719619255
EIRVVTVEI	9	Unmodified	_EIRVVTVEI_					0	0	0		ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.316162109375	2	529.316232	1056.61791	1.2844	0.00067988	-1.8688	-0.00098917	-0.58433	-0.00030929	529.3151936383892	36.287	1.5152	36.089	35.809	37.324	-0.19829					79	38	4	0	0	0	0.53979	1	2817	2817		56.721	1.9987	1	6646300			11247	17542	7726	7743	12720	12720					0.09186585165866745
EISAELYKD	9	Unmodified	_EISAELYKD_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7888793945312	2	534.266404	1066.51826	-0.65547	-0.00035019	2.6846	0.0014343	2.0291	0.0010841	534.2663567336958	78.156	0.69759	78.156	77.833	78.531	0					38	16	3	0	0	0	0.024354	1	9660	9660		38.806	0	1	163590			11248	4940	7727	7744	12721	12721					-0.012342772387455625
EISAMPYAF	9	Unmodified	_EISAMPYAF_					0	0	0			REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.290283203125	2	514.741511	1027.46847	0.21732	0.00011186	3.8312	0.0019721	4.0485	0.0020839	514.7431033106946	70.214	0.48529	70	69.688	70.174	-0.21425					27	11	3	0	0	0	0.024325	1	8174	8174		31.955	4.0726	1	313530	+		11249	21690	7728	7745	12722	12722					-0.04416683448425829
EISAPDEEW	9	Unmodified	_EISAPDEEW_					0	0	0			REV__ENSG00000114656|ENST00000645291|CFAP92	REV__ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.79931640625	2	538.232561	1074.45057	-0.013788	-7.4209E-06	0.86328	0.00046465	0.84949	0.00045723	538.2328944331599	87.19	0.6741	87.211	86.886	87.56	0.021255					28	15	2	0	0	0	0.024412	1	10920	10920		31.955	8.9124	1	87908	+		11250	22135	7729	7746	12723	12723					-0.08367727169570571
EISCLRLKG	9	Unmodified	_EISCLRLKG_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.32586669921875	2	509.789327	1017.5641	-0.12953	-6.6032E-05	0.28881	0.00014723	0.15929	8.1202E-05	509.7897459828174	77.582	0.40984	77.582	77.382	77.792	0					12	9	2	0	0	0	0.024021	1	9604	9604		40.778	1.5253	1	114240			11251	1247	7730	7747	12724	12724					0.05602089462490767
EISCSMVVLL	10	Unmodified	_EISCSMVVLL_					0	0	0		ENST00000518857.5_1_8:104081005-104081197:+|nuORF	ENST00000518857.5_1_8:104081005-104081197:+|nuORF	ENST00000518857.5_1_8:104081005-104081197:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.808837890625	2	547.285228	1092.5559	-0.48683	-0.00026643	-2.835	-0.0015516	-3.3219	-0.001818	547.2857169319286	54.213	0.20446	54.066	53.954	54.159	-0.14723					7	5	2	0	0	0	0.03519	1	5899	5899		35.618	1.4457	1	47948			11252	15937	7731	7748	12725	12725					0.013327744308753608
EISDKWQY	8	Unmodified	_EISDKWQY_					0	0	0		ENST00000489755.1_1_1:53684409-53684595:-|nuORF;ENSG00000162384|ENST00000294360|CZIB	ENST00000489755.1_1_1:53684409-53684595:-|nuORF	ENST00000489755.1_1_1:53684409-53684595:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7296142578125	2	534.753464	1067.49238	-0.48357	-0.00025859	-4.4648	-0.0023876	-4.9484	-0.0026462	534.7522716959991	59.942	0.34291	59.693	59.457	59.8	-0.24842					11	8	2	0	0	0	0.027866	1	6647	6647		50.025	11.218	1	110990			11253	6933	7732	7749	12726	12726					-0.03867126690374789
EISDSQNLREM	11	Unmodified	_EISDSQNLREM_					0	0	0			REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.24371337890625	3	441.206603	1320.59798	-0.56336	-0.00024856	-4.0595	-0.0017911	-4.6228	-0.0020396	441.53854890046483	24.8	0.64648	24.585	24.296	24.943	-0.2151					23	14	2	0	0	0	0.024789	1	1158	1158		33.039	15.873	1	72922	+		11254	26236	7733	7750	12727	12727					-0.049495786271108955
EISDSQNLREM	11	Unmodified	_EISDSQNLREM_					0	0	0			REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	441.206603	1320.59798	-0.24571	-0.00010841	-5.6969	-0.0025135	-5.9426	-0.0026219	441.53805477716514	24.578	0.59828	24.404	24.089	24.688	-0.17484	-0.090758	-0.0011686	NaN	33.039	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58424	+		11255	26236	7733	7750							-0.049495786271108955
EISFGGILSP	10	Unmodified	_EISFGGILSP_					0	0	0		nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;ENSG00000154529|ENST00000377561|CNTNAP3B	nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2639465332031	2	510.274032	1018.53351	0.02735	1.3956E-05	3.8072	0.0019427	3.8345	0.0019567	510.27544575776034	81.758	0.97525	81.565	81.213	82.188	-0.19334					31	16	3	0	0	0	0.03519	1	9863	9863		66.429	20.477	1	259360			11256	6417	7734	7751	12728	12728					0.024986343491150365
EISFTNIFI	9	Unmodified	_EISFTNIFI_					0	0	0		ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.8085327148438	2	542.289682	1082.56481	-0.29308	-0.00015894	0.93339	0.00050617	0.64031	0.00034723	542.2894497142843	54.941	0.5215	54.941	54.831	55.353	0					23	14	2	0	0	0	0.024541	1	6100	6100		24.203	13.337	1	102460			11257	8910	7735	7752	12729	12729					0.026832073831883463
EISFWEIN	8	Unmodified	_EISFWEIN_					0	0	0			REV__ENST00000512751.5_1_5:112312677-112343644:+|nuORF	REV__ENST00000512751.5_1_5:112312677-112343644:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7696533203125	2	519.250557	1036.48656	-1.0303	-0.000535	0.96504	0.0005011	-0.065284	-3.3899E-05	519.2503734696945	34.646	2.1016	34.696	33.687	35.788	0.050251					74	53	2	0	0	0	0.027866	1	2701	2701		38.806	0	1	273450	+		11258	26711	7736	7753	12730	12730					-0.030222252020166707
EISKLKQQLQR	11	Unmodified	_EISKLKQQLQR_					0	0	0		ENSG00000121104|ENST00000240364|FAM117A	ENSG00000121104|ENST00000240364|FAM117A	ENSG00000121104|ENST00000240364|FAM117A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.60821533203125	3	457.608659	1369.80415	0.77891	0.00035644	-2.1925	-0.0010033	-1.4136	-0.00064687	457.6077655587918	98.898	1.8258	98.761	97.927	99.752	-0.13625					121	44	3	0	0	0	1.0592	1	12226	12226		22.562	1.5294	1	383140			11259	3856	7737	7754	12731	12731					0.1340378233435331
EISLKLASI	9	Unmodified	_EISLKLASI_					0	0	0		ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19;TTC19-PIGL|1|fusion	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7742919921875	2	487.30005	972.585547	-0.33656	-0.00016401	0.047274	2.3036E-05	-0.28929	-0.00014097	487.30022306841715	56.06	0.61671	55.904	55.704	56.321	-0.15602					22	16	2	0	0	0	0.024397	1	6190	6190		31.53	3.2755	1	117140			11260	892	7738	7755	12732	12732					0.09815797762848888
EISLNWSIL	9	Unmodified	_EISLNWSIL_					0	0	0			REV__ENST00000366734.5_1_1:228296398-228296536:-|nuORF	REV__ENST00000366734.5_1_1:228296398-228296536:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.7843017578125	2	537.795132	1073.57571	-0.69058	-0.00037139	3.2393	0.0017421	2.5487	0.0013707	537.7966571949117	57.233	0.85372	57.233	56.678	57.532	0					40	23	2	0	0	0	0.023454	1	6455	6455		82.241	36.268	1	882080	+		11261	30986	7739	7756	12733	12733					0.0418660975747116
EISLNWSIL	9	Unmodified	_EISLNWSIL_					0	0	0			REV__ENST00000366734.5_1_1:228296398-228296536:-|nuORF	REV__ENST00000366734.5_1_1:228296398-228296536:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.795132	1073.57571	-0.179	-9.6266E-05	2.7267	0.0014664	2.5477	0.0013701	537.7963721534376	57.478	0.98083	57.303	56.665	57.646	-0.1749	0.089485	-0.00032837	NaN	82.241	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	754060	+		11262	30986	7739	7756							0.0418660975747116
EISLNWSIL	9	Unmodified	_EISLNWSIL_					0	0	0			REV__ENST00000366734.5_1_1:228296398-228296536:-|nuORF	REV__ENST00000366734.5_1_1:228296398-228296536:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.795132	1073.57571	-0.9363	-0.00050354	3.5254	0.0018959	2.5891	0.0013924	537.7967707659081	57.094	0.92448	57.19	56.578	57.503	0.09531	-0.023881	0.00053072	NaN	82.241	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631160	+		11263	30986	7739	7756							0.0418660975747116
EISLQIAQRGQ	11	Unmodified	_EISLQIAQRGQ_					0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.8985595703125	3	414.89821	1241.6728	0.04343	1.8019E-05	0.18869	7.8288E-05	0.23212	9.6307E-05	414.8983674042411	25.156	1.4178	25.156	24.786	26.203	0					97	33	6	0	0	0	0.61955	1	1164	1164		68.626	4.9317	1	11629000	+		11264	28710	7740	7757	12734	12734					0.061629719664551885
EISLQIAQRGQ	11	Unmodified	_EISLQIAQRGQ_					0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.8985595703125	3	414.89821	1241.6728	-0.59711	-0.00024774	0.90478	0.00037539	0.30766	0.00012765	414.89867835631566	25.215	1.3769	25.181	24.815	26.192	-0.034395					96	32	6	0	0	0	0.81748	1	1159	1159		56.632	3.0354	1	11333000	+		11265	28710	7740	7757	12735	12735					0.061629719664551885
EISNCEYLPP	10	Unmodified	_EISNCEYLPP_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	583.752685546875	2	582.765714	1163.51688	-0.23817	-0.0001388	3.7899	0.0022086	3.5517	0.0020698	582.7677477047929	74.067	0.47484	74.076	73.837	74.312	0.0096588					21	10	3	0	0	0	0.03519	1	9008	9008		33.922	0	1	476260			11266	18063	7741	7758	12736	12736					-0.058342345991604816
EISNFDQPIY	10	Unmodified	_EISNFDQPIY_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2908935546875	2	613.290411	1224.56627	-1.0024	-0.00061478	0.30194	0.00018517	-0.70049	-0.0004296	613.2906327929812	61.043	2.0404	60.789	60.253	62.293	-0.25373					176	50	5	0	0	0	0.52765	1	6803	6803		85.161	0	1	55372000	+		11267	25775	7742	7759	12737	12737					-0.03703203318696069
EISPLHSSL	9	Unmodified	_EISPLHSSL_					0	0	0		AluSx_dup108495|chr19:47742279-47742570:-|1.1370174590336468|0.3451542978898808|1.72|520.0|8|2|sense	AluSx_dup108495|chr19:47742279-47742570:-|1.1370174590336468|0.3451542978898808|1.72|520.0|8|2|sense	AluSx_dup108495|chr19:47742279-47742570:-|1.1370174590336468|0.3451542978898808|1.72|520.0|8|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2872314453125	2	491.763832	981.513111	0.45106	0.00022181	0.041559	2.0437E-05	0.49262	0.00024225	491.7619438386441	67.737	0.11092	67.737	67.644	67.755	0					4	2	2	0	0	0	0.024523	1	8089	8089		15.642	10.084	1	19079			11268	76	7743	7760	12738	12738					0.021614636893104944
EISQKTVL	8	Unmodified	_EISQKTVL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2685852050781	2	459.26875	916.522947	-0.31441	-0.0001444	0.31937	0.00014668	0.0049547	2.2755E-06	459.26873078819	39.979	0.60056	39.83	39.553	40.153	-0.1497					46	15	5	0	0	0	0.27973	2	3432	3420;3432		120.62	24.431	1	3443100			11269	7673	7744	7761	12739;12740	12740					0.06134651694674176
EISQKTVL	8	Unmodified	_EISQKTVL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2689514160156	2	459.26875	916.522947	-0.22474	-0.00010322	0.19114	8.7783E-05	-0.033603	-1.5433E-05	459.26870924287863	40.136	0.63908	39.911	39.62	40.259	-0.225					46	16	5	0	0	0	0.4075	1	3433	3433		96.19	11.275	1	3753000			11270	7673	7744	7761	12741	12741					0.06134651694674176
EISQKTVL	8	Unmodified	_EISQKTVL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.26861572265625	2	459.26875	916.522947	-0.54897	-0.00025212	0.47056	0.00021612	-0.078406	-3.6009E-05	459.26884561861465	40.139	0.64989	39.909	39.585	40.235	-0.2302					44	16	4	0	0	0	0.2917	1	3435	3435		115.46	23.268	1	3555800			11271	7673	7744	7761	12742	12742					0.06134651694674176
EISQVCATKL	10	Unmodified	_EISQVCATKL_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.7755126953125	2	546.291899	1090.56925	-0.55668	-0.00030411	-3.7568	-0.0020523	-4.3135	-0.0023564	546.2901056517433	52.638	0.68781	52.73	52.363	53.05	0.091938					32	17	3	0	0	0	0.03519	1	5521	5521		47.96	10.8	1	1488300			11272	4606	7745	7762	12743	12743					0.027583485344621295
EISRYIEGQSE	11	Unmodified	_EISRYIEGQSE_					0	0	0			REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.263671875	3	437.545613	1309.61501	-0.13564	-5.9348E-05	0.89717	0.00039255	0.76153	0.0003332	437.545892896987	41.394	0.80301	41.164	40.848	41.651	-0.2303					54	20	3	0	0	0	0.02473	1	3606	3606		18.332	0	1	749750	+		11273	36849	7746	7763	12744	12744					-0.027413347496121787
EISSPFLN	8	Unmodified	_EISSPFLN_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.21807861328125	2	453.732	905.449448	0.37389	0.00016965	0.013252	6.0129E-06	0.38714	0.00017566	453.7318189074315	59.106	0.52533	58.925	58.75	59.276	-0.18133					20	12	2	0	0	0	0.027866	1	6565	6565		16.473	0	1	275110			11274	3685	7747	7764	12745	12745					-0.007058967478087652
EISSRPVAPI	10	Unmodified	_EISSRPVAPI_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2843017578125	2	534.806031	1067.59751	-2.1938	-0.0011733	1.2028	0.00064327	-0.991	-0.00052999	534.804896041424	38.186	0.26711	38.213	38.162	38.429	0.027275					10	7	2	0	0	0	0.03519	1	3132	3132		44.377	13.874	1	79779	+		11275	22204	7748	7765	12746	12746					0.06641414506043475
EISTCHQLL	9	Unmodified	_EISTCHQLL_					0	0	0		nc|ENSG00000101158|Q8IXH7|NELFCD;ENSG00000101158|ENST00000652272|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF	nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7830200195312	2	522.263142	1042.51173	-0.22934	-0.00011978	3.7786	0.0019734	3.5493	0.0018537	522.2653585415571	67.798	0.38133	67.798	67.644	68.026	0					11	9	2	0	0	0	0.024288	1	8107	8107		52.937	12.159	1	89994			11276	18130	7749	7766	12747	12747					-0.007824936711131159
EISVKLDAL	9	Unmodified	_EISVKLDAL_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.28973388671875	2	494.289682	986.564812	-0.78937	-0.00039018	0.99293	0.00049079	0.20355	0.00010061	494.2901026631211	61.53	1.1132	61.352	61.078	62.191	-0.17781					72	27	4	0	0	0	0.53979	1	6895	6895		56.721	6.6965	1	1800600	+		11277	27966	7750	7767	12748	12748					0.07099207383191697
EISVTTPSQF	10	Unmodified	_EISVTTPSQF_					0	0	0		ENSG00000136717|ENST00000316724|BIN1	ENSG00000136717|ENST00000316724|BIN1	ENSG00000136717|ENST00000316724|BIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7507934570312	2	554.779679	1107.5448	-1.3826	-0.00076702	0.58535	0.00032474	-0.79722	-0.00044228	554.7801122237931	65.369	0.64893	65.166	64.617	65.266	-0.20263					24	15	2	0	0	0	0.03519	1	7400	7400		56.721	33.679	1	520420			11278	5038	7751	7768	12749	12749					-0.00466588347421748
EISWNNDNN	9	Unmodified	_EISWNNDNN_					0	0	0		ENST00000507037.5_1_5:177305712-177377317:+|nuORF;nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3	ENST00000507037.5_1_5:177305712-177377317:+|nuORF	ENST00000507037.5_1_5:177305712-177377317:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2621459960938	2	553.230884	1104.44722	-0.96522	-0.00053399	0.28327	0.00015672	-0.68195	-0.00037727	553.2309510465848	44.471	0.68497	44.366	44.099	44.784	-0.10468					28	17	2	0	0	0	0.024457	1	4195	4195		15.642	0	1	261470			11279	1149	7752	7769	12750	12750					-0.10082977223578382
EITAKNGRI	9	Unmodified	_EITAKNGRI_					0	0	0		ENSG00000136011|ENST00000388887|STAB2;STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;STAB2|p.T1102Qfs*18|1|0.1|ENSG00000136011|chr12:103692818-103692818|A/-|frameshift_variant;STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.29107666015625	2	501.290548	1000.56654	-0.51649	-0.00025891	-0.28986	-0.0001453	-0.80636	-0.00040422	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.77768	1	10679	10679		40.778	1.5253	1	8326900			11280	4969	7753	7770	12751	12751					0.06628261191815454
EITAKNGRI	9	Unmodified	_EITAKNGRI_					0	0	0		ENSG00000136011|ENST00000388887|STAB2;STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;STAB2|p.T1102Qfs*18|1|0.1|ENSG00000136011|chr12:103692818-103692818|A/-|frameshift_variant;STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904968261719	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.80003	1	10538	10538		39.253	3.6345	1	10557000			11281	4969	7753	7770	12752	12752					0.06628261191815454
EITAQIIQI	9	Unmodified	_EITAQIIQI_					0	0	0			REV__nc|ENSG00000127084|Q5JSP0-2|FGD3	REV__nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.80224609375	2	514.802957	1027.59136	0.2812	0.00014476	0.77356	0.00039823	1.0548	0.00054299	514.8021864761686	69.138	1.3265	68.846	68.634	69.961	-0.29269					72	33	4	0	0	0	0.094442	1	8295	8295		112.41	16.596	1	3975900	+		11282	22917	7754	7771	12753	12753					0.07866896274549617
EITDINENI	9	Unmodified	_EITDINENI_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.285400390625	2	530.761486	1059.50842	-1.5034	-0.00079797	-1.8168	-0.0009643	-3.3203	-0.0017623	530.7603605734897	44.28	0.85216	44.136	43.814	44.666	-0.14471					43	24	2	0	0	0	0.024484	1	4139	4139		30.318	3.6248	1	509620			11283	9315	7755	7772	12754	12754					-0.01895465244137995
EITDINENI	9	Unmodified	_EITDINENI_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.761486	1059.50842	-1.6216	-0.00086067	-1.4649	-0.00077752	-3.0865	-0.0016382	530.7604609145263	44.23	0.78638	44.23	43.836	44.622	0	-0.033604	0.00046697	NaN	42.864	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487010			11284	9315	7755	7772							-0.01895465244137995
EITDINENI	9	Unmodified	_EITDINENI_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.761486	1059.50842	-0.49878	-0.00026474	-2.709	-0.0014378	-3.2078	-0.0017026	530.7598591242007	44.166	0.86155	44.203	43.888	44.749	0.0369	-0.060422	-0.00085366	NaN	42.864	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545750			11285	9315	7755	7772							-0.01895465244137995
EITDINENI	9	Unmodified	_EITDINENI_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.761486	1059.50842	-1.0428	-0.0005535	-0.72495	-0.00038478	-1.7678	-0.00093827	530.7599248695527	44.59	0.31408	44.485	44.275	44.589	-0.10468	0.22184	0.0012525	NaN	42.864	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56881			11286	9315	7755	7772							-0.01895465244137995
EITGKKTT	8	Unmodified	_EITGKKTT_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3;nc|ENSG00000166900|Q13277-3|STX3;ENSG00000166900|ENST00000337979|STX3;ENST00000533637.5_1_11:59556413-59568372:+|nuORF	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2522277832031	2	439.2531	876.491647	-0.43149	-0.00018953	0.071916	3.1589E-05	-0.35958	-0.00015795	439.2526196526615	89.96	1.6578	89.96	88.978	90.636	0					92	39	4	0	0	0	1.0574	1	11357	11357		21.96	0	1	2093000			11287	7625	7756	7773	12755	12755					0.04846078660580133
EITHTGEKP	9	Unmodified	_EITHTGEKP_					0	0	0		ZNF491|p.R179I|1|0.23|ENSG00000177599|chr19:11806489-11806489|G/T|missense_variant	ZNF491|p.R179I|1|0.23|ENSG00000177599|chr19:11806489-11806489|G/T|missense_variant	ZNF491|p.R179I|1|0.23|ENSG00000177599|chr19:11806489-11806489|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8229064941406	2	506.258914	1010.50327	-0.71713	-0.00036305	-1.8959	-0.0009598	-2.613	-0.0013229	506.25796112272786	60.459	1.4053	60.205	59.566	60.971	-0.25374					44	35	2	0	0	0	0.024319	1	6723	6723		56.721	0	1	168280			11288	38193	7757	7774	12756	12756					-0.0015572431608461557
EITIGICKT	9	Unmodified	_EITIGICKT_					0	0	0			REV__ELP3-MYO5C|1|fusion	REV__ELP3-MYO5C|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7538146972656	2	489.270435	976.526318	1.0985	0.00053745	1.3089	0.0006404	2.4074	0.0011779	489.2698120919533	51.707	0.3761	51.523	51.258	51.634	-0.18404					15	9	2	0	0	0	0.023454	1	5287	5287		36.447	0	1	152200	+		11289	19748	7758	7775	12757	12757					0.03711578477009425
EITIVFIAH	9	Unmodified	_EITIVFIAH_					0	0	0			REV__ENSG00000101350|ENST00000375712|KIF3B	REV__ENSG00000101350|ENST00000375712|KIF3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7648315429688	2	521.800217	1041.58588	-1.4518	-0.00075755	-2.7553	-0.0014377	-4.2071	-0.0021952	521.7987062567225	35.934	0.30688	35.934	35.687	35.994	0					11	7	2	0	0	0	0.024381	1	2809	2809		29.15	8.6677	1	149930	+		11290	21224	7759	7776	12758	12758					0.06675217482734297
EITKNPKMI	9	Unmodified	_EITKNPKMI_					0	0	0			REV__ENST00000482384.1_1_1:109757484-109757604:+|nuORF	REV__ENST00000482384.1_1_1:109757484-109757604:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7686157226562	2	537.30481	1072.59507	-0.39491	-0.00021219	-3.0948	-0.0016628	-3.4897	-0.001875	537.3028555968274	58.227	0.35319	58.037	57.946	58.299	-0.19018					10	8	2	0	0	0	0.023417	1	6396	6396		68.787	19.345	1	292200	+		11291	33483	7760	7777	12759	12759					0.061672427767234694
EITKVLIID	9	Unmodified	_EITKVLIID_					0	0	0			REV__ENST00000438766.1_1_2:139654799-139654901:+|nuORF	REV__ENST00000438766.1_1_2:139654799-139654901:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.8297119140625	2	522.320983	1042.62741	-1.0005	-0.00052259	-1.4635	-0.0007644	-2.464	-0.001287	522.3199515373623	21.159	0.5429	20.946	20.673	21.216	-0.2128					20	10	3	0	0	0	0.024457	1	640	640		45.952	7.1458	1	143090	+		11292	32497	7761	7778	12760	12760					0.10780353451400515
EITLEHQT	8	Unmodified	_EITLEHQT_					0	0	0			REV__ENSG00000283247|ENST00000636578|CCDC201	REV__ENSG00000283247|ENST00000636578|CCDC201	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.7562255859375	2	485.745639	969.476725	-0.15388	-7.4748E-05	0.40608	0.00019725	0.2522	0.0001225	485.74582523461527	45.81	0.42739	45.549	45.35	45.777	-0.26118					15	11	2	0	0	0	0.027866	1	4363	4363		17.365	0	1	260230	+		11293	29242	7762	7779	12761	12761					-0.009234132074197987
EITLKTGPL	9	Unmodified	_EITLKTGPL_					0	0	0		ENST00000566297.1_1_1:182584407-182584638:+|nuORF	ENST00000566297.1_1_1:182584407-182584638:+|nuORF	ENST00000566297.1_1_1:182584407-182584638:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2926025390625	2	486.292225	970.569897	-1.3874	-0.0006747	1.6559	0.00080526	0.26846	0.00013055	486.29274797679466	55.405	0.70467	55.503	55.294	55.999	0.098015					43	18	4	0	0	0	0.6504	1	6056	6056		49.442	1.7842	1	2345900			11294	16942	7763	7780	12762	12762					0.08343511245811897
EITLVATKP	9	Unmodified	_EITLVATKP_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2925109863281	2	486.292225	970.569897	-1.3874	-0.0006747	1.6559	0.00080526	0.26846	0.00013055	486.29274797679466	55.405	0.70467	55.503	55.294	55.999	0.098015					43	18	4	0	0	0	0.56934	1	6044	6044		54.776	1.4249	1	2345900			11295	6690	7764	7781	12763	12763					0.08343511245800528
EITNYVIEL	9	Unmodified	_EITNYVIEL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.3135375976562	2	547.292422	1092.57029	-0.93685	-0.00051273	3.5651	0.0019512	2.6283	0.0014384	547.7958205692679	45.59	0.13195	45.388	45.293	45.425	-0.20226					6	3	2	0	0	0	0.024292	1	4313	4313		58.782	4.0056	1	90583			11296	6479	7765	7782	12764	12764					0.0277088617501704
EITQGLCFPA	10	Unmodified	_EITQGLCFPA_					0	0	0		PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant;ENSG00000277161|ENST00000614443|PIGW	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.332275390625	2	539.765517	1077.51648	-0.83735	-0.00045197	-2.4574	-0.0013264	-3.2947	-0.0017784	539.763830325034	66.922	0.89839	66.922	66.63	67.528	0					29	21	2	0	0	0	0.03519	1	8021	8021		44.377	0	1	179260			11297	11054	7766	7783	12765	12765					-0.019176095283455652
EITRRNKPA	9	Unmodified	_EITRRNKPA_					0	0	0			REV__ENST00000496564.1_1_7:42974654-42988199:+|nuORF	REV__ENST00000496564.1_1_7:42974654-42988199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.243896484375	2	542.814722	1083.61489	-0.68514	-0.0003719	2.699	0.0014651	2.0139	0.0010932	542.8160143606691	66.983	0.72693	66.759	66.67	67.397	-0.22374					26	18	2	0	0	0	0.024381	1	7792	7792		37.159	0	1	1326000	+		11298	21629	7767	7784	12766	12766					0.07642754831704224
EITVLKHC	8	Unmodified	_EITVLKHC_					0	0	0			REV__ENSG00000163558|ENST00000295797|PRKCI	REV__ENSG00000163558|ENST00000295797|PRKCI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2458801269531	2	471.757495	941.500437	0.060768	2.8668E-05	4.0708	0.0019204	4.1315	0.0019491	471.7601038742594	22.311	0.2347	22.236	22.082	22.317	-0.075296					6	4	2	0	0	0	0.027866	1	758	758		45.952	24.25	1	15404	+		11299	25592	7768	7785	12767	12767					0.02734729025382876
EITYLGQPD	9	Unmodified	_EITYLGQPD_					0	0	0		ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3193969726562	2	518.253297	1034.49204	0.055466	2.8745E-05	-0.2528	-0.00013101	-0.19733	-0.00010227	518.2531309663152	68.41	0.81458	68.118	67.781	68.596	-0.29267					61	20	4	0	0	0	0.024397	1	8153	8153		31.53	10.583	1	1859800			11300	5583	7769	7786	12768	12768					-0.02382546410217401
EIVDCNSTNN	10	Unmodified	_EIVDCNSTNN_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3057250976562	2	554.732403	1107.45025	-0.79621	-0.00044168	-1.3144	-0.00072916	-2.1106	-0.0011708	554.7315287268658	43.614	0.32731	43.614	43.367	43.695	0					13	8	2	0	0	0	0.03519	1	4096	4096		67.494	19.836	1	90436	+		11301	22298	7770	7787	12769	12769					-0.09917470161053643
EIVDCNSTNN	10	Unmodified	_EIVDCNSTNN_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3051147460938	2	554.732403	1107.45025	-1.1015	-0.00061104	-1.6197	-0.00089848	-2.7212	-0.0015095	554.7314660734739	43.731	0.28518	43.586	43.425	43.71	-0.14471					11	7	2	0	0	0	0.03519	1	4108	4108		72.879	24.964	1	130570	+		11302	22298	7770	7787	12770	12770					-0.09917470161053643
EIVDLGTMVT	10	Unmodified	_EIVDLGTMVT_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant;PCLO|p.S2108*|1|0.22|ENSG00000186472|chr7:82954630-82954630|G/-|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.81591796875	2	539.278457	1076.54236	-1.2006	-0.00064747	-2.505	-0.0013509	-3.7056	-0.0019983	539.2778025475294	43.93	0.63046	43.685	43.344	43.975	-0.2444					21	16	2	0	0	0	0.03519	1	4039	4039		47.657	0	1	194900			11303	9552	7771	7788	12771	12771					0.007152399232609241
EIVHCCEEQV	10	Unmodified	_EIVHCCEEQV_					0	0	0		ENSG00000121577|ENST00000493094|POPDC2;ENST00000468916.1_1_3:119367508-119379270:-|nuORF;nc|ENSG00000121577|Q9HBU9-2|POPDC2;nc|ENSG00000121577|Q9HBU9|POPDC2	ENSG00000121577|ENST00000493094|POPDC2	ENSG00000121577|ENST00000493094|POPDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.2506103515625	2	594.754824	1187.49509	-1.6058	-0.00095507	3.0968	0.0018418	1.491	0.00088675	594.756488020362	48.762	0.53775	48.482	48.218	48.756	-0.27977					19	14	2	0	0	0	0.03519	1	4879	4879		18.262	9.0792	1	457300			11304	3874	7772	7789	12772	12772					-0.09115362619400003
EIVHFRHHL	9	Unmodified	_EIVHFRHHL_					0	0	0			REV__ZNF573|p.P161H|1|0.26|ENSG00000189144|chr19:37740008-37740008|G/T|missense_variant	REV__ZNF573|p.P161H|1|0.26|ENSG00000189144|chr19:37740008-37740008|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.7725219726562	2	594.325257	1186.63596	-1.2261	-0.00072868	-0.38575	-0.00022926	-1.6118	-0.00095794	594.3249641300329	43.37	0.68508	43.144	42.833	43.518	-0.22597					47	18	4	0	0	0	0.024436	1	3924	3924		30.504	0	1	1388900	+		11305	28102	7773	7790	12773	12773					0.05010764931239464
EIVIFSLTNN	10	Unmodified	_EIVIFSLTNN_					0	0	0			REV__ENSG00000150540|ENST00000280097|HNMT	REV__ENSG00000150540|ENST00000280097|HNMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.7955322265625	2	575.311146	1148.60774	1.2739	0.00073287	3.4405	0.0019794	4.7144	0.0027122	575.3126912528833	63.742	0.53422	63.793	63.589	64.123	0.051453					24	14	3	0	0	0	0.03519	1	7359	7359		42.396	0	1	324340	+		11306	24722	7774	7791	12774	12774					0.039379774406370416
EIVIKITE	8	Unmodified	_EIVIKITE_					0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.26983642578125	2	472.786776	943.558998	0.010299	4.8694E-06	-3.0482	-0.0014411	-3.0379	-0.0014363	472.7852123648791	26.695	0.41325	26.672	26.446	26.859	-0.023088					17	9	2	0	0	0	0.027866	1	1385	1385		14.865	0	1	171220	+		11307	20510	7775	7792	12775	12775					0.08496108871509023
EIVIPFKVD	9	Unmodified	_EIVIPFKVD_					0	0	0		nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB;IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant;IQUB|p.G141A|1|0.13|ENSG00000164675|chr7:123510011-123510011|C/G|missense_variant;ENST00000483567.1_1_7:123143235-123152394:-|nuORF	nc|ENSG00000164675|Q8NA54-2|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7886962890625	2	530.307875	1058.6012	0.13736	7.2841E-05	2.1159	0.0011221	2.2532	0.0011949	530.3090585767733	71.926	0.94107	71.637	71.113	72.054	-0.28858					54	24	3	0	0	0	0.024427	1	8740	8740		34.173	11.13	1	959200			11308	7306	7776	7793	12776	12776					0.07424084279909948
EIVIYPLNI	9	Unmodified	_EIVIYPLNI_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2975463867188	2	537.3157	1072.61685	-0.82989	-0.00044591	3.0122	0.0016185	2.1823	0.0011726	537.3175625194804	59.668	0.51659	59.753	59.464	59.98	0.085686					14	13	2	0	0	0	0.024209	1	6705	6705		47.657	1.6851	1	116980	+		11309	27409	7777	7794	12777	12777					0.08344370796953626
EIVKAAKAPVK	11	Unmodified	_EIVKAAKAPVK_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3663940429688	2	577.368798	1152.72304	0.46361	0.00026767	-4.3189	-0.0024936	-3.8553	-0.0022259	577.3661806344381	101.22	0.81992	101.09	100.81	101.63	-0.13156					47	17	5	0	0	0	1.0592	1	12569	12569		22.58	0.61977	1	985230			11310	18238	7778	7795	12778	12778					0.15279126362247553
EIVKAAKAPVK	11	Unmodified	_EIVKAAKAPVK_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.3658447265625	2	577.368798	1152.72304	-0.17168	-9.9121E-05	-3.7011	-0.0021369	-3.8728	-0.002236	577.3665334259606	101.3	0.81555	101.13	100.88	101.69	-0.17178					47	17	4	0	0	0	1.0592	1	12577	12577		22.58	0.61977	1	911130			11311	18238	7778	7795	12779	12779					0.15279126362247553
EIVLENNND	9	Unmodified	_EIVLENNND_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.7955322265625	2	530.251286	1058.48802	-1.048	-0.00055571	1.2077	0.00064037	0.15966	8.4658E-05	530.2520273904032	54.629	0.72604	54.629	54.357	55.083	0					34	20	2	0	0	0	0.024418	1	5943	5943		37.812	0	1	155850			11312	4945	7779	7796	12780	12780					-0.03888635903922477
EIVRLGREV	9	Unmodified	_EIVRLGREV_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7658081054688	2	535.819473	1069.62439	-0.59259	-0.00031752	-0.065557	-3.5127E-05	-0.65814	-0.00035265	535.8194451923309	49.434	0.7737	49.281	49.006	49.78	-0.15236					34	20	3	0	0	0	0.024319	1	5075	5075		56.721	9.0637	1	714100	+		11313	26930	7780	7797	12781	12781					0.09236523117260731
EIVRVTLKRDP	11	Unmodified	_EIVRVTLKRDP_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;ENST00000486151.5_1_10:49386068-49414901:-|nuORF	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.7682189941406	3	442.601504	1324.78268	0.54222	0.00023999	-2.342	-0.0010366	-1.7998	-0.00079658	442.6007398797832	102.53	0.67576	102.35	102.09	102.76	-0.17178					43	15	4	0	0	0	0.02476	1	12767	12767		38.714	11.964	1	539770			11314	8024	7781	7798	12782	12782					0.1332839730566775
EIVSYQVEL	9	Unmodified	_EIVSYQVEL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.282470703125	2	540.284597	1078.55464	-0.87799	-0.00047437	2.9523	0.0015951	2.0743	0.0011207	540.2859063588794	80.09	0.63072	80.09	79.87	80.5	0					25	14	3	0	0	0	0.0242	1	10002	10002		69.628	35.455	1	824730			11315	1175	7782	7799	12783	12783					0.01850599657973362
EIVSYQVEL	9	Unmodified	_EIVSYQVEL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.284597	1078.55464	-1.2392	-0.00066951	3.3445	0.001807	2.1053	0.0011375	540.2863725186056	80.09	0.33556	80.111	79.938	80.274	0.021439	0.05799	0.00035485	NaN	69.628	21	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863550			11316	1175	7782	7799							0.01850599657973362
EIVSYQVEL	9	Unmodified	_EIVSYQVEL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.284597	1078.55464	-0.070584	-3.8135E-05	1.8646	0.0010074	1.7941	0.00096931	540.2857835799788	80.237	0.49694	79.999	79.831	80.328	-0.23784	-0.053689	-0.0012442	NaN	69.628	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253500			11317	1175	7782	7799							0.01850599657973362
EIVSYQVEL	9	Unmodified	_EIVSYQVEL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.284597	1078.55464	-0.031819	-1.7192E-05	1.7665	0.00095439	1.7346	0.0009372	540.7874685060202	80.218	0.41434	80.011	79.843	80.257	-0.20633	-0.041727	-0.0013503	NaN	69.628	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191100			11318	1175	7782	7799							0.01850599657973362
EIVSYYVT	8	Unmodified	_EIVSYYVT_					0	0	0			REV__ENSG00000171657|ENST00000302548|GPR82	REV__ENSG00000171657|ENST00000302548|GPR82	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7742919921875	2	487.247483	972.480414	-0.1576	-7.6789E-05	-3.8487	-0.0018753	-4.0063	-0.001952	487.24551807425297	55.625	0.80473	55.469	55.227	56.031	-0.15601					28	21	2	0	0	0	0.027866	1	6190	6190		38.806	1.7777	1	239440	+		11319	26588	7783	7800	12784	12784					-0.006927434335693761
EIVVAGKFDP	10	Unmodified	_EIVVAGKFDP_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7665405273438	2	537.795132	1073.57571	-1.3989	-0.00075235	4.3871	0.0023594	2.9882	0.001607	537.797439032394	83.421	1.452	83.448	83.046	84.498	0.026558					60	33	2	0	0	0	0.03519	1	10333	10333		65.157	3.466	1	666580		+	11320	6216	7784	7801	12785	12785					0.0418660975747116
EIVVKNNP	8	Unmodified	_EIVVKNNP_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2952575683594	2	456.761092	911.507631	0.35614	0.00016267	0.65926	0.00030112	1.0154	0.0004638	456.7610835835798	56.09	0.67504	56.09	55.822	56.497	0					22	18	2	0	0	0	0.027866	1	6239	6239		29.15	6.1071	1	104180			11321	9655	7785	7802	12786	12786					0.04833784897482474
EIWEGSPSI	9	Unmodified	_EIWEGSPSI_					0	0	0			REV__nc|ENSG00000151490|Q16827-2|PTPRO	REV__nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2843322753906	2	509.248015	1016.48148	0.71001	0.00036157	2.3703	0.0012071	3.0803	0.0015686	509.24918336958996	83.199	0.85228	83.108	82.83	83.682	-0.090454					23	19	2	0	0	0	0.024354	1	10332	10332		23.042	5.6775	1	112280	+		11322	24775	7786	7803	12787	12787					-0.026105290646455614
EIWIVSLI	8	Unmodified	_EIWIVSLI_					0	0	0			REV__ENSG00000176798|ENST00000641819|OR51L1	REV__ENSG00000176798|ENST00000641819|OR51L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.80657958984375	2	486.791861	971.569169	-0.39325	-0.00019143	-3.0204	-0.0014703	-3.4136	-0.0016617	486.79019805849975	34.144	0.55037	34.144	33.894	34.444	0					32	13	3	0	0	0	0.027866	1	2564	2564		26.796	4.8362	1	411880	+		11323	27048	7787	7804	12788	12788					0.08224716596760118
EIWIVSLI	8	Unmodified	_EIWIVSLI_					0	0	0			REV__ENSG00000176798|ENST00000641819|OR51L1	REV__ENSG00000176798|ENST00000641819|OR51L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.8064270019531	2	486.791861	971.569169	-0.18072	-8.7971E-05	-3.2879	-0.0016005	-3.4686	-0.0016885	486.7900740883415	33.94	0.58469	33.935	33.676	34.261	-0.0045624					33	14	3	0	0	0	0.027866	1	2525	2525		26.796	2.5934	1	435430	+		11324	27048	7787	7804	12789	12789					0.08224716596760118
EIWRRGSLIN	10	Unmodified	_EIWRRGSLIN_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3530883789062	2	622.348929	1242.6833	-0.12632	-7.8614E-05	2.2563	0.0014042	2.13	0.0013256	622.3509724786077	97.403	0.541	97.242	96.951	97.492	-0.16106					15	11	2	0	0	0	0.98527	1	12040	12040		47.96	5.6214	1	34698	+		11325	20628	7788	7805	12790	12790					0.07166999411583674
EIWRRGSLIN	10	Unmodified	_EIWRRGSLIN_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	622.348929	1242.6833	-0.39788	-0.00024762	3.3639	0.0020935	2.966	0.0018459	622.351521026877	97.368	0.35758	97.368	97.147	97.504	0	0.062995	0.00077538	NaN	47.96	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29220	+		11326	20628	7788	7805							0.07166999411583674
EIWRRGSLIN	10	Unmodified	_EIWRRGSLIN_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	622.348929	1242.6833	0.75824	0.00047189	2.7466	0.0017093	3.5048	0.0021812	622.3512010244139	97.297	0.40162	97.306	97.148	97.55	0.0089111	0.00096393	7.0352E-06	NaN	47.96	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24721	+		11327	20628	7788	7805							0.07166999411583674
EIWRRGSLIN	10	Unmodified	_EIWRRGSLIN_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	622.348929	1242.6833	0.31535	0.00019626	2.9023	0.0018062	3.2176	0.0020025	622.3506136796358	97.466	0.22336	97.466	97.28	97.503	-3.8147E-05	0.16036	0.00020083	NaN	47.96	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33026	+		11328	20628	7788	7805							0.07166999411583674
EIWRRGSLIN	10	Unmodified	_EIWRRGSLIN_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	622.348929	1242.6833	-0.038042	-2.3675E-05	2.6279	0.0016354	2.5898	0.0016118	622.3507505589661	97.269	0.62416	97.145	96.884	97.508	-0.12368	-0.16047	-0.00014072	NaN	47.96	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45588	+		11329	20628	7788	7805							0.07166999411583674
EIWRRGSLIN	10	Unmodified	_EIWRRGSLIN_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	622.348929	1242.6833	-0.12632	-7.8614E-05	2.2563	0.0014042	2.13	0.0013256	622.3509724786077	97.403	0.541	97.242	96.951	97.492	-0.16106	-0.063849	-0.00060321	NaN	47.96	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34698	+		11330	20628	7788	7805							0.07166999411583674
EIWTDIAKP	9	Unmodified	_EIWTDIAKP_					0	0	0			REV__ENSG00000118096|ENST00000264021|IFT46	REV__ENSG00000118096|ENST00000264021|IFT46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.775634765625	2	536.787307	1071.56006	0.32613	0.00017506	0.43668	0.00023441	0.76281	0.00040947	536.7876535013534	79.754	0.41795	79.508	79.278	79.696	-0.2465					14	9	2	0	0	0	0.023239	1	9527	9527		74.255	17.534	1	310760	+		11331	22387	7789	7806	12791	12791					0.027143232404114315
EIWVEATN	8	Unmodified	_EIWVEATN_					0	0	0		ENSG00000006016|ENST00000392386|CRLF1	ENSG00000006016|ENST00000392386|CRLF1	ENSG00000006016|ENST00000392386|CRLF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2922668457031	2	481.234907	960.455261	-0.33138	-0.00015947	-3.5225	-0.0016951	-3.8539	-0.0018546	481.23432353515534	56.51	1.4999	56.346	55.583	57.083	-0.16431					53	41	2	0	0	0	0.027866	1	6172	6172		25.45	3.4903	1	136490			11332	780	7790	7807	12792	12792					-0.02654798236130773
EIYDSKEP	8	Unmodified	_EIYDSKEP_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.80242919921875	2	490.732197	979.449842	2.255	0.0011066	-0.44991	-0.00022078	1.8051	0.00088581	490.73182776110275	24.675	0.8266	24.495	24.072	24.898	-0.18089					22	18	2	0	0	0	0.027866	1	1126	1126		45.952	13.14	1	57356			11333	8503	7791	7808	12793	12793					-0.04070521818607631
EIYDSKEP	8	Unmodified	_EIYDSKEP_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.732197	979.449842	-0.41217	-0.00020227	1.7685	0.00086788	1.3564	0.00066562	490.7328880045524	24.509	0.92336	24.509	23.951	24.874	0	0.0058226	9.0638E-05	NaN	45.952	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316190			11334	8503	7791	7808							-0.04070521818607631
EIYDSKEP	8	Unmodified	_EIYDSKEP_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.732197	979.449842	-1.1822	-0.00058013	2.4554	0.0012049	1.2732	0.00062481	490.73323325418613	24.557	0.89042	24.51	24	24.891	-0.047148	0.0065052	0.00076476	NaN	45.952	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313320			11335	8503	7791	7808							-0.04070521818607631
EIYDSKEP	8	Unmodified	_EIYDSKEP_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.732197	979.449842	-0.0073985	-3.6307E-06	1.313	0.00064435	1.3056	0.00064072	490.7326526065373	24.397	0.72764	24.475	24.003	24.731	0.078344	-0.028533	-0.00035643	NaN	45.952	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296750			11336	8503	7791	7808							-0.04070521818607631
EIYDSKEP	8	Unmodified	_EIYDSKEP_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.732197	979.449842	-0.75132	-0.0003687	2.036	0.00099913	1.2847	0.00063043	490.73307649893775	24.8	0.43195	24.585	24.377	24.809	-0.2151	0.08123	0.00035312	NaN	45.952	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60455			11337	8503	7791	7808							-0.04070521818607631
EIYDSKEP	8	Unmodified	_EIYDSKEP_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.732197	979.449842	-0.047394	-2.3258E-05	1.4145	0.00069415	1.3671	0.00067089	490.7326538218949	24.622	0.39061	24.447	24.252	24.643	-0.17484	-0.056109	-0.00025683	NaN	45.952	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68975			11338	8503	7791	7808							-0.04070521818607631
EIYSLFAR	8	Unmodified	_EIYSLFAR_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3057556152344	2	499.768917	997.523281	-0.72043	-0.00036005	-2.5975	-0.0012982	-3.318	-0.0016582	499.7661886853408	33.005	0.15528	33.012	32.888	33.043	0.0066261					5	3	2	0	0	0	0.027866	1	2317	2317		23.042	0	1	31576	+		11339	21528	7792	7809	12794	12794					0.024420714145207967
EIYVFVAPL	9	Unmodified	_EIYVFVAPL_					0	0	0			REV__ENSG00000182621|ENST00000338037|PLCB1	REV__ENSG00000182621|ENST00000338037|PLCB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2788696289062	2	525.797143	1049.57973	0.25166	0.00013232	2.1	0.0011042	2.3516	0.0012365	525.798793488368	86.886	0.76439	86.907	86.33	87.094	0.021263					23	17	2	0	0	0	0.024466	1	10790	10790		18.324	0.95945	1	48922	+		11340	27498	7793	7810	12795	12795					0.056926992511762364
EIYVFVAPL	9	Unmodified	_EIYVFVAPL_					0	0	0			REV__ENSG00000182621|ENST00000338037|PLCB1	REV__ENSG00000182621|ENST00000338037|PLCB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.797143	1049.57973	-0.11579	-6.088E-05	2.656	0.0013965	2.5402	0.0013357	525.7987174391847	86.883	0.42113	86.841	86.513	86.934	-0.042412	-0.033116	0.00025867	NaN	18.324	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49309	+		11341	27498	7793	7810							0.056926992511762364
EIYWGCFYF	9	Unmodified	_EIYWGCFYF_					0	0	0		ENSG00000187186|ENST00000421828|unknown	ENSG00000187186|ENST00000421828|unknown	ENSG00000187186|ENST00000421828|unknown	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.8915710449219	3	409.844166	1226.51067	-0.3835	-0.00015717	-3.0286	-0.0012413	-3.4121	-0.0013984	409.84284615005726	28.037	1.4569	27.868	27.528	28.985	-0.16897					50	34	2	0	0	0	0.024427	1	1663	1663		34.173	5.0025	1	148070			11342	9613	7794	7811	12796	12796					-0.09352708040023572
EIYWRRRE	8	Unmodified	_EIYWRRRE_					0	0	0			REV__ENST00000526132.5_1_1:52522019-52530572:+|nuORF	REV__ENST00000526132.5_1_1:52522019-52530572:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5548095703125	3	403.215873	1206.62579	0.52262	0.00021073	-3.9452	-0.0015908	-3.4226	-0.0013801	403.2140230027807	22.068	0.74776	21.877	21.662	22.409	-0.19072					21	15	2	0	0	0	0.027866	1	789	789		60.972	23.16	1	105710	+		11343	34433	7795	7812	12797	12797					0.030741572059923783
EKAEAQRLA	9	Unmodified	_EKAEAQRLA_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89726389-89728307:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.292724609375	2	508.28018	1014.54581	-0.52745	-0.00026809	-0.36905	-0.00018758	-0.8965	-0.00045567	508.28035234983815	21.021	1.0623	20.931	20.291	21.354	-0.090092					49	21	5	0	0	0	0.024457	1	647	647		29.15	0	1	249500			11344	6412	7796	7813	12798	12798					0.03911670812124157
EKAFCQSST	9	Unmodified	_EKAFCQSST_					0	0	0		ZNF391|p.G339E|1|0.62|ENSG00000124613|chr6:27401386-27401386|G/A|missense_variant	ZNF391|p.G339E|1|0.62|ENSG00000124613|chr6:27401386-27401386|G/A|missense_variant	ZNF391|p.G339E|1|0.62|ENSG00000124613|chr6:27401386-27401386|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7400817871094	2	500.723849	999.433146	-0.24865	-0.0001245	0.43713	0.00021888	0.18848	9.4378E-05	500.7249997959537	40.719	0.17743	40.494	40.406	40.583	-0.225					5	4	2	0	0	0	0.024447	1	3527	3527		40.778	3.6191	1	100800			11345	38189	7797	7814	12799	12799					-0.06659345976220266
EKAGRVFDI	9	Unmodified	_EKAGRVFDI_					0	0	0			REV__ENSG00000138385|ENST00000260956|SSB	REV__ENSG00000138385|ENST00000260956|SSB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2709350585938	2	517.785099	1033.55564	-0.44809	-0.00023201	-1.4078	-0.00072892	-1.8559	-0.00096094	517.7839057524783	28.536	0.49228	28.384	28.162	28.655	-0.15195					27	11	4	0	0	0	0.024307	1	1625	1625		46.457	19.764	1	508080	+		11346	23849	7798	7815	12800	12800					0.040208588175119075
EKAKAARPPW	10	Unmodified	_EKAKAARPPW_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7783203125	2	577.327465	1152.64038	-0.39009	-0.00022521	-1.9863	-0.0011468	-2.3764	-0.001372	577.3260488261584	46.974	0.45319	46.704	46.49	46.943	-0.26939					16	12	2	0	0	0	0.03519	1	4512	4512		24.519	0	1	118000			11347	3284	7799	7816	12801	12801					0.07016229354121606
EKAKKSRQS	9	Unmodified	_EKAKKSRQS_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.255615234375	2	531.306729	1060.59891	-0.17139	-9.1063E-05	4.1522	0.0022061	3.9809	0.0021151	531.3085915911465	28.628	0.41386	28.708	28.493	28.907	0.080811					15	9	2	0	0	0	0.024438	1	1626	1626		29.17	9.1733	1	57651	+		11348	28201	7800	7817	12802	12802					0.07103048594785832
EKALEKKPK	9	Unmodified	_EKALEKKPK_					0	0	0		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3184814453125	2	535.832049	1069.64954	-0.73976	-0.00039638	1.1474	0.00061482	0.40766	0.00021844	535.8324458759904	79.543	1.5059	79.543	78.867	80.373	0					77	35	3	0	0	0	0.024397	1	9977	9977		31.53	1.2121	1	223430			11349	3775	7801	7818	12803	12803					0.11750577919769967
EKALFHVR	8	Unmodified	_EKALFHVR_					0	0	0			REV__ENST00000450544.1_1_7:63361310-63365003:+|nuORF	REV__ENST00000450544.1_1_7:63361310-63365003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7684020996094	2	500.290351	998.566149	-0.36046	-0.00018034	-1.02	-0.00051031	-1.3805	-0.00069064	500.29025124164184	43.132	0.74667	42.895	42.639	43.385	-0.23737					58	19	5	0	0	0	0.027866	1	3937	3937		31.53	3.6476	1	2157100	+		11350	32704	7802	7819	12804	12804					0.06680886262597596
EKAPTALAAN	10	Unmodified	_EKAPTALAAN_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7850341796875	2	493.269281	984.52401	-0.77702	-0.00038328	-0.85158	-0.00042006	-1.6286	-0.00080334	493.2695540018493	47.157	0.6518	47.216	46.995	47.647	0.059097					42	18	3	0	0	0	0.03519	1	4693	4693		47.96	7.1814	1	773340	+		11351	21973	7803	7820	12805	12805					0.031128660635431515
EKAQKRLHWER	11	Unmodified	_EKAQKRLHWER_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.328857421875	3	494.275903	1479.80588	0.51911	0.00025658	3.347	0.0016543	3.8661	0.0019109	494.27785719463816	18.303	0.44257	18.147	17.953	18.396	-0.15637					12	8	2	0	0	0	0.024779	1	299	299		34.087	11.525	1	27825	+		11352	20332	7804	7821	12806	12806					0.08516836142962347
EKASHTIIS	9	Unmodified	_EKASHTIIS_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7847595214844	2	493.269281	984.52401	0.39626	0.00019546	-2.2404	-0.0011051	-1.8442	-0.00090967	493.26890943723055	47.384	0.53626	47.231	46.94	47.476	-0.15301					32	14	3	0	0	0	0.024397	1	4763	4763		39.253	0.44669	1	891150	+		11353	20775	7805	7822	12807	12807					0.031128660635772576
EKATSLQTI	9	Unmodified	_EKATSLQTI_					0	0	0			REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1	REV__nc|ENSG00000068438|Q9UET6-2|FTSJ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.77655029296875	2	495.776939	989.539325	-0.78508	-0.00038922	0.073893	3.6634E-05	-0.71118	-0.00035259	495.7769557752513	27.755	1.7137	27.587	27.057	28.77	-0.16816					101	40	4	0	0	0	0.34489	1	1585	1585		69.628	5.4204	1	10973000	+		11354	20379	7806	7823	12808	12808					0.04413732860757591
EKAYAQISYPE	11	Unmodified	_EKAYAQISYPE_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.2740783691406	3	433.546954	1297.61903	0.054886	2.3796E-05	4.4727	0.0019391	4.5276	0.0019629	433.5487487838324	54.978	0.64176	54.747	54.423	55.065	-0.23087					29	17	2	0	0	0	0.02478	1	5872	5872		53.597	19.675	1	178280	+		11355	25765	7807	7824	12809	12809					-0.017872452558776786
EKCLKHVRI	9	Unmodified	_EKCLKHVRI_					0	0	0		DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant;ENSG00000145214|ENST00000273814|DGKQ	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.25927734375	2	563.331693	1124.64883	-0.32921	-0.00018545	-2.6625	-0.0014999	-2.9917	-0.0016853	563.3303736201333	27.502	0.24605	27.345	27.145	27.391	-0.15664					8	5	2	0	0	0	0.024511	1	1482	1482		40.778	12.896	1	35075			11356	636	7808	7825	12810	12810					0.09149459999093779
EKDAWDTY	8	Unmodified	_EKDAWDTY_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.802734375	2	514.221997	1026.42944	-0.11634	-5.9826E-05	-1.9307	-0.0009928	-2.047	-0.0010526	514.2205992481054	60.007	0.37552	59.758	59.533	59.909	-0.24842					13	9	2	0	0	0	0.027866	1	6657	6657		47.657	0	1	149800	+		11357	24522	7809	7826	12811	12811					-0.08271692478433579
EKDFQEDIP	9	Unmodified	_EKDFQEDIP_					0	0	0			REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.2882080078125	2	560.761486	1119.50842	0.86782	0.00048664	-0.10934	-6.1315E-05	0.75848	0.00042533	560.7599062325081	51.415	0.54465	51.232	50.868	51.412	-0.18348					21	13	2	0	0	0	0.024374	1	5236	5236		32.812	0	1	105560	+		11358	26501	7810	7827	12812	12812					-0.046554652441500366
EKDGEKGQY	9	Unmodified	_EKDGEKGQY_					0	0	0		ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000174238|ENST00000313486|PITPNA	ENSG00000180957|ENST00000335272|PITPNB	ENSG00000180957|ENST00000335272|PITPNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.2461547851562	2	527.246003	1052.47745	-0.85978	-0.00045332	1.1237	0.00059249	0.26396	0.00013917	527.2464833756903	38.198	1.0389	38.018	37.775	38.814	-0.17929					80	29	4	0	0	0	0.15029	1	3151	3151		99.375	14.459	1	5896700			11359	9012	7811	7828	12813	12813					-0.046686185583666884
EKDGILCVSRL	11	Unmodified	_EKDGILCVSRL_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.56103515625	3	411.560429	1231.65946	-0.41613	-0.00017126	2.0836	0.00085753	1.6675	0.00068626	411.5611272703713	20.696	1.767	20.472	20.02	21.787	-0.22344					80	35	3	0	0	0	0.99036	1	577	577		38.96	4.8731	1	285030	+		11360	24888	7812	7829	12814	12814					0.05289397862861733
EKDLRSTP	8	Unmodified	_EKDLRSTP_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.25347900390625	2	473.253631	944.49271	0.0064711	3.0625E-06	-0.10796	-5.1094E-05	-0.10149	-4.8031E-05	473.2535066556965	30.552	1.0493	30.56	30.247	31.296	0.0086708					64	24	4	0	0	0	0.5947	1	1971	1971		76.774	7.1465	1	3703500			11361	1775	7813	7830	12815	12815					0.018242930294718462
EKDPNERY	8	Unmodified	_EKDPNERY_					0	0	0		nc|ENSG00000008118|Q96NX5-2|CAMK1G;ENSG00000008118|ENST00000361322|CAMK1G	nc|ENSG00000008118|Q96NX5-2|CAMK1G	nc|ENSG00000008118|Q96NX5-2|CAMK1G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7667236328125	2	525.74617	1049.47779	-0.60992	-0.00032066	0.43919	0.0002309	-0.17073	-8.976E-05	525.7463284014359	31.005	0.33373	30.764	30.541	30.875	-0.24109					11	7	2	0	0	0	0.027866	1	2040	2040		47.916	0	1	46378			11362	833	7814	7831	12816	12816					-0.04497198838521399
EKEAAQVNPIM	11	Unmodified	_EKEAAQVNPIM_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.755615234375	3	410.544667	1228.61217	-0.78864	-0.00032377	-1.3915	-0.00057129	-2.1802	-0.00089506	410.5440716240555	37.613	0.35393	37.393	37.152	37.506	-0.2195					14	8	2	0	0	0	0.024747	1	3047	3047		39.873	7.839	1	151890			11363	9841	7815	7832	12817	12817					0.007011185918599949
EKEALWLY	8	Unmodified	_EKEALWLY_					0	0	0		ENST00000488183.5_1_3:120400985-120401039:-|nuORF	ENST00000488183.5_1_3:120400985-120401039:-|nuORF	ENST00000488183.5_1_3:120400985-120401039:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8143310546875	2	526.276575	1050.5386	1.5219	0.00080093	1.5939	0.00083885	3.1158	0.0016398	526.2774514302926	18.544	0.24321	18.544	18.431	18.674	0					6	4	2	0	0	0	0.027866	1	290	290		18.324	0	1	14354			11364	15387	7816	7833	12818	12818					0.015349382117165078
EKEEAKFF	8	Unmodified	_EKEEAKFF_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7897338867188	2	514.258382	1026.50221	-0.48637	-0.00025012	4.3324	0.002228	3.8461	0.0019779	514.761869755596	61.518	0.19374	61.589	61.512	61.706	0.071129					7	4	2	0	0	0	0.027866	1	7053	7053		45.952	11.779	1	67544			11365	8235	7817	7834	12819	12819					-0.009979386850091032
EKEEAKQI	8	Unmodified	_EKEEAKQI_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2709045410156	2	487.761289	973.508025	0.11824	5.7673E-05	-2.7163	-0.0013249	-2.598	-0.0012672	487.75981064750897	22.785	0.79208	22.596	22.374	23.166	-0.18894					20	16	2	0	0	0	0.027866	1	866	866		45.972	3.5761	1	79879			11366	2948	7818	7835	12820	12820					0.02021159826665553
EKEEAKQI	8	Unmodified	_EKEEAKQI_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.761289	973.508025	-0.43819	-0.00021373	1.2973	0.00063275	0.85907	0.00041902	487.76200930765464	22.315	1.0997	22.315	22.106	23.206	0	-0.096248	0.0031385	NaN	45.972	37	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202650			11367	2948	7818	7835							0.02021159826665553
EKEEAKQI	8	Unmodified	_EKEEAKQI_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.761289	973.508025	-0.38297	-0.0001868	1.3353	0.00065131	0.95234	0.00046451	487.76175218945895	22.397	0.97222	22.321	22.082	23.054	-0.075296	-0.089444	0.0031756	NaN	45.972	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209650			11368	2948	7818	7835							0.02021159826665553
EKEEGREA	8	Unmodified	_EKEEGREA_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.26922607421875	2	474.225071	946.435589	0.53034	0.0002515	-0.26168	-0.00012409	0.26867	0.00012741	474.2248365680468	26.973	0.62012	26.973	26.741	27.361	0					20	15	2	0	0	0	0.027866	1	1394	1394		25.45	10.585	1	209790			11369	7695	7819	7836	12821	12821					-0.039771742468929006
EKEGDLLQP	9	Unmodified	_EKEGDLLQP_					0	0	0		ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7902221679688	2	514.766571	1027.51859	0.28652	0.00014749	-0.43776	-0.00022535	-0.15124	-7.7853E-05	514.7663345303732	61.647	0.54147	61.421	61.225	61.766	-0.22663					19	13	2	0	0	0	0.024447	1	7146	7146		25.574	11.437	1	133590			11370	2379	7820	7837	12822	12822					0.005931424811024044
EKEHCEVD	8	Unmodified	_EKEHCEVD_					0	0	0			REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79705810546875	2	494.705657	987.39676	-0.45536	-0.00022527	-2.6097	-0.001291	-3.0651	-0.0015163	494.704400338587	51.36	0.46718	51.211	51.008	51.475	-0.14916					17	12	2	0	0	0	0.027866	1	5395	5395		47.916	9.1095	1	70709	+		11371	25097	7821	7838	12823	12823					-0.09744222872927821
EKEHCEVD	8	Unmodified	_EKEHCEVD_					0	0	0			REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7973937988281	2	494.705657	987.39676	-0.91541	-0.00045286	-1.2793	-0.00063286	-2.1947	-0.0010857	494.70459911312855	51.049	0.52029	51.136	50.855	51.375	0.087006					19	13	2	0	0	0	0.027866	1	5299	5299		44.117	6.9577	1	108990	+		11372	25097	7821	7838	12824	12824					-0.09744222872927821
EKEIQELLGF	10	Unmodified	_EKEIQELLGF_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant;ENST00000554621.1_1_12:96883387-96894780:+|nuORF	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.55084228515625	3	402.551928	1204.63395	0.86825	0.00034952	-2.7371	-0.0011018	-1.8688	-0.00075231	402.55087598156456	23.384	1.1067	23.182	22.64	23.747	-0.20193					75	24	4	0	0	0	0.88978	1	923	923		54.722	1.6334	1	2797200			11373	9730	7822	7839	12825	12825					0.039822466120767785
EKEKNKLK	8	Unmodified	_EKEKNKLK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.80865478515625	2	508.808574	1015.60259	-1.1139	-0.00056677	0.79497	0.00040449	-0.31895	-0.00016228	508.80892461335	29.225	0.69212	28.98	28.665	29.357	-0.24524					52	15	5	0	0	0	0.44658	1	1778	1778		90.777	5.4172	1	1115700			11374	6943	7823	7840	12826	12826					0.09541718368654983
EKEKSLRER	9	Unmodified	_EKEKSLRER_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.8059692382812	2	587.830569	1173.64658	-0.59357	-0.00034892	-3.1769	-0.0018675	-3.7705	-0.0022164	587.8283703081694	62.502	0.34993	62.281	62.005	62.355	-0.22097					16	8	3	0	0	0	0.024462	1	6992	6992		37.508	5.9784	1	913690	+		11375	20777	7824	7841	12827	12827					0.06670702794986028
EKEKTKYL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EKEKTKYL_					1	0	0			REV__ENST00000546048.5_1_12:69218187-69233568:+|nuORF	REV__ENST00000546048.5_1_12:69218187-69233568:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3002319335938	2	540.800414	1079.58628	-0.72246	-0.00039071	1.4469	0.00078246	0.7244	0.00039176	540.8026227011625	101.88	1.2406	101.88	101.28	102.53	0					87	27	4	0	0	0	0.83003	1	13027	13027		56.721	6.6965	1	2719300	+		11376	34833	7825	7842	12828	12828					0.049665924119153715
EKELEAFEA	9	Unmodified	_EKELEAFEA_					0	0	0			REV__nc|ENSG00000127946|O00291-3|HIP1	REV__nc|ENSG00000127946|O00291-3|HIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7684936523438	2	533.258579	1064.50261	-0.90698	-0.00048366	0.24259	0.00012936	-0.6644	-0.00035429	533.2586956391184	22.995	0.41189	22.995	22.711	23.123	0					17	8	3	0	0	0	0.024292	1	866	866		58.782	12.81	1	63755	+		11377	22953	7826	7843	12829	12829					-0.02706563755782554
EKELPLTSLL	10	Unmodified	_EKELPLTSLL_					0	0	0		ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	572.2620239257812	2	571.836997	1141.65944	-0.04841	-2.7683E-05	0.53293	0.00030475	0.48452	0.00027706	571.8370865898072	42.932	0.32417	42.792	42.667	42.991	-0.13929					20	8	3	0	0	0	0.03519	1	3995	3995		47.657	7.0847	1	269230			11378	9206	7827	7844	12830	12830					0.09427721134534295
EKEPELAIY	9	Unmodified	_EKEPELAIY_					0	0	0			REV__ENSG00000123165|ENST00000371124|ACTRT1	REV__ENSG00000123165|ENST00000371124|ACTRT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.810791015625	2	546.284597	1090.55464	-0.16433	-8.9771E-05	-3.4427	-0.0018807	-3.607	-0.0019705	546.282690861228	70.352	0.36513	70.095	69.81	70.175	-0.25713					12	8	2	0	0	0	0.024495	1	8163	8163		34.173	8.5985	1	94747	+		11379	22682	7828	7845	12831	12831					0.012985996579345738
EKEPWEPMRRH	11	Unmodified	_EKEPWEPMRRH_					0	0	0		ZNF43|p.D117Rfs*3|1|0.31|ENSG00000198521|chr19:21809688-21809689|-/T|frameshift_variant;nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43	ZNF43|p.D117Rfs*3|1|0.31|ENSG00000198521|chr19:21809688-21809689|-/T|frameshift_variant	ZNF43|p.D117Rfs*3|1|0.31|ENSG00000198521|chr19:21809688-21809689|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.9019470214844	3	498.913865	1493.71977	-0.71997	-0.0003592	3.6267	0.0018094	2.9067	0.0014502	499.2504107132693	43.939	0.37422	43.834	43.622	43.996	-0.10468					11	9	2	0	0	0	0.024765	1	4060	4060		40.015	9.4465	1	243830			11380	10143	7829	7846	12832	12832					-0.007344917540649476
EKEQMLEY	8	Oxidation (M)	_EKEQM(Oxidation (M))LEY_		EKEQM(1)LEY		EKEQM(53)LEY	0	0	1		nc|ENSG00000213085|Q9UL16-2|CFAP45;ENSG00000213085|ENST00000368099|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2443237304688	2	543.244615	1084.47468	-0.35769	-0.00019432	0.98754	0.00053648	0.62985	0.00034216	543.2446333116471	67.232	3.2131	67.008	66.714	69.927	-0.22374					160	78	4	0	0	0	0.87148	1	7817	7817		53.351	8.8204	1	2465700			11381	10491	7830	7847	12833	12833		443			-0.06418210007564085
EKEQMLEY	8	Oxidation (M)	_EKEQM(Oxidation (M))LEY_		EKEQM(1)LEY		EKEQM(71)LEY	0	0	1		nc|ENSG00000213085|Q9UL16-2|CFAP45;ENSG00000213085|ENST00000368099|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2440795898438	2	543.244615	1084.47468	-0.93321	-0.00050696	3.0823	0.0016745	2.1491	0.0011675	543.2449757333122	67.185	3.5011	66.947	66.571	70.072	-0.23814					162	87	3	0	0	0	0.6536	1	7777	7777		71.296	7.0884	1	2397200			11382	10491	7830	7847	12834	12834		443			-0.06418210007564085
EKEQTSLQ	8	Unmodified	_EKEQTSLQ_					0	0	0			REV__ENST00000511816.1_1_17:46928876-46929999:+|nuORF	REV__ENST00000511816.1_1_17:46928876-46929999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2772521972656	2	481.743096	961.47164	-0.25305	-0.0001219	2.3886	0.0011507	2.1356	0.0010288	481.744281052521	24.57	0.53274	24.57	24.297	24.83	0					16	11	2	0	0	0	0.027866	1	1095	1095		34.173	0	1	69491	+		11383	23655	7831	7848	12835	12835					-0.010637170700420029
EKEREKRA	8	Unmodified	_EKEREKRA_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3267211914062	2	523.291079	1044.56761	-1.0129	-0.00053002	4.1352	0.0021639	3.1223	0.0016339	523.2897029867494	55.185	0.55177	55.283	55.083	55.634	0.098015					33	14	3	0	0	0	0.027866	1	5993	5993		23.042	0	1	429800	+		11384	19886	7832	7849	12836	12836					0.047104755607279
EKERGGEPKG	10	Unmodified	_EKERGGEPKG_					0	0	0		ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7672119140625	2	543.780544	1085.54654	-0.26348	-0.00014327	3.6991	0.0020115	3.4356	0.0018682	543.782325655862	58.233	0.40091	58.233	58.056	58.457	0					17	10	2	0	0	0	0.03519	1	6610	6610		40.058	0	1	294750			11385	1395	7833	7850	12837	12837					0.0071846546118194965
EKERLSAR	8	Unmodified	_EKERLSAR_					0	0	0			REV__ENSG00000088899|ENST00000337576|LZTS3	REV__ENSG00000088899|ENST00000337576|LZTS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7851867675781	2	494.780348	987.546142	-0.43893	-0.00021717	1.9137	0.00094686	1.4748	0.00072969	494.78121109888133	25.343	0.56301	25.343	24.964	25.527	0					35	13	3	0	0	0	0.027866	1	1217	1217		30.318	0	1	759650	+		11386	20829	7834	7851	12838	12838					0.051870905319901794
EKFCRSSWMRP	11	Unmodified	_EKFCRSSWMRP_					0	0	0		ENST00000460620.5_1_1:114402081-114414292:-|nuORF;ENST00000529045.1_1_1:114406964-114414292:-|nuORF	ENST00000460620.5_1_1:114402081-114414292:-|nuORF	ENST00000460620.5_1_1:114402081-114414292:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2608642578125	3	476.228796	1425.66456	-0.35861	-0.00017078	2.4602	0.0011716	2.1015	0.0010008	476.2307909119835	28.112	0.3918	27.96	27.729	28.121	-0.15195					14	9	2	0	0	0	0.024816	1	1558	1558		21.78	3.9473	1	833270			11387	14661	7835	7852	12839	12839					-0.03124621546180606
EKFIRLESTF	10	Unmodified	_EKFIRLESTF_					0	0	0		ENSG00000115421|ENST00000238714|PAPOLG;ENST00000453839.5_1_2:61014200-61024278:+|nuORF	ENSG00000115421|ENST00000238714|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5472106933594	3	423.899439	1268.67649	-0.057419	-2.434E-05	-1.809	-0.00076683	-1.8664	-0.00079117	423.89837650931815	28.967	0.51485	28.818	28.572	29.087	-0.14952					23	11	3	0	0	0	0.03519	1	1750	1750		30.569	8.7884	1	113950			11388	3445	7836	7853	12840	12840					0.052896417403189844
EKFKVPVE	8	Unmodified	_EKFKVPVE_					0	0	0		ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.29351806640625	2	488.279118	974.543683	-0.089324	-4.3615E-05	0.44451	0.00021704	0.35519	0.00017343	488.27918135303105	90.446	0.90988	90.429	90.038	90.948	-0.016716					56	21	4	0	0	0	0.027866	1	11352	11352		16.473	7.7795	1	886480			11389	2027	7837	7854	12841	12841					0.055392420743373805
EKFLHLDSHGT	11	Unmodified	_EKFLHLDSHGT_					0	0	0			REV__EIF4E2|p.F113L|1|0.27|ENSG00000135930|chr2:232564315-232564315|C/A|missense_variant	REV__EIF4E2|p.F113L|1|0.27|ENSG00000135930|chr2:232564315-232564315|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7403869628906	3	428.55081	1282.6306	0.72419	0.00031035	-2.491	-0.0010675	-1.7668	-0.00075715	428.5493801858387	22.471	1.029	22.269	21.903	22.932	-0.20198					63	21	4	0	0	0	0.024765	1	771	771		39.873	0	1	897380	+		11390	19740	7838	7855	12842	12842					0.0005899655809571414
EKGCLPVQLT	10	Unmodified	_EKGCLPVQLT_					0	0	0		ENST00000428210.5_1_2:61729402-61752656:-|nuORF	ENST00000428210.5_1_2:61729402-61752656:-|nuORF	ENST00000428210.5_1_2:61729402-61752656:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3314208984375	2	544.294442	1086.57433	-1.1153	-0.00060703	-1.8526	-0.0010084	-2.9679	-0.0016154	544.7960213507765	44.931	0.45539	44.931	44.758	45.214	0					20	12	2	0	0	0	0.03519	1	4300	4300		30.318	0	1	69251			11391	14129	7839	7856	12843	12843					0.0345065239705491
EKGDQHVLD	9	Unmodified	_EKGDQHVLD_					0	0	0			REV__ENSG00000234828|ENST00000636793|IQCM	REV__ENSG00000234828|ENST00000636793|IQCM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8192138671875	2	520.753995	1039.49344	0.0014249	7.4202E-07	-3.5995	-0.0018745	-3.5981	-0.0018737	520.752056500874	71.521	0.60798	71.521	71.223	71.831	0					23	15	2	0	0	0	0.02438	1	8699	8699		31.634	12.531	1	264580	+		11392	28920	7840	7857	12844	12844					-0.024729123214683568
EKGILKKR	8	Unmodified	_EKGILKKR_					0	0	0			REV__ENSG00000197157|ENST00000354725|SND1	REV__ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.8138427734375	2	486.321651	970.62875	0.17312	8.419E-05	-0.64141	-0.00031193	-0.46829	-0.00022774	486.3212038478918	21.119	0.57906	20.942	20.63	21.209	-0.17721					26	11	4	0	0	0	0.027866	1	658	658		15.642	5.3766	1	456320	+		11393	28273	7841	7858	12845	12845					0.14226032330793714
EKGKHCIL	8	Unmodified	_EKGKHCIL_					0	0	0		nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2508239746094	2	464.257662	926.500772	-0.9423	-0.00043747	-3.0575	-0.0014195	-3.9998	-0.0018569	464.2560545063784	64.77	0.56027	64.77	64.46	65.02	0					24	14	2	0	0	0	0.027866	1	7676	7676		24.203	4.8428	1	312880			11394	1569	7842	7859	12846	12846					0.03458148745244216
EKGKHCIL	8	Unmodified	_EKGKHCIL_					0	0	0		nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.250732421875	2	464.257662	926.500772	-1.3074	-0.00060696	-2.7807	-0.0012909	-4.088	-0.0018979	464.2561433019473	65.006	0.79274	64.744	64.379	65.172	-0.2626					31	20	3	0	0	0	0.027866	1	7695	7695		37.159	24.952	1	370130			11395	1569	7842	7859	12847	12847					0.03458148745244216
EKGKIGIG	8	Unmodified	_EKGKIGIG_					0	0	0			REV__ENSG00000101974|ENST00000682941|ATP11C	REV__ENSG00000101974|ENST00000682941|ATP11C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.21234130859375	2	401.245078	800.475603	1.3708	0.00055002	-0.60771	-0.00024384	0.76308	0.00030618	401.24471927358456	36.595	0.28354	36.397	36.292	36.576	-0.19829					8	6	2	0	0	0	0.027866	1	2862	2862		8.2313	1.0379	1	29191	+		11396	21272	7843	7860	12848	12848					0.06738417214330639
EKGKQTRFTN	10	Unmodified	_EKGKQTRFTN_					0	0	0		ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.55108642578125	3	403.550921	1207.63093	0.5911	0.00023854	-0.53968	-0.00021779	0.051419	2.075E-05	403.55002561900886	23.499	0.59018	23.319	22.929	23.519	-0.17989					18	13	2	0	0	0	0.03519	1	916	916		27.644	0	1	106090			11397	9398	7844	7861	12849	12849					0.035424162779463586
EKGKSLRVP	9	Unmodified	_EKGKSLRVP_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29248046875	2	507.308741	1012.60293	-0.26409	-0.00013397	-0.91256	-0.00046295	-1.1766	-0.00059692	507.30866530715247	52.004	0.7359	52.004	51.736	52.472	0					37	19	4	0	0	0	0.024319	1	5569	5569		66.429	11.707	1	2505000			11398	6575	7845	7862	12850	12850					0.0971313808852301
EKGKSLRVP	9	Unmodified	_EKGKSLRVP_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.308741	1012.60293	-0.17961	-9.1115E-05	-0.36355	-0.00018443	-0.54315	-0.00027554	507.30823404455094	51.944	0.69514	51.826	51.431	52.126	-0.11876	-0.10368	5.143E-05	NaN	66.429	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310000			11399	6575	7845	7862							0.0971313808852301
EKGSDKKI	8	Unmodified	_EKGSDKKI_					0	0	0			REV__ENSG00000164543|ENST00000319357|STK17A	REV__ENSG00000164543|ENST00000319357|STK17A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.7267761230469	2	452.758549	903.502546	-0.31966	-0.00014473	4.1862	0.0018953	3.8666	0.0017506	452.7593192643187	23.354	1.1666	23.43	22.656	23.822	0.076241					63	26	3	0	0	0	0.027866	1	896	896		51.335	19.381	1	82483	+		11400	25771	7846	7863	12851	12851					0.04693481034848901
EKGVDAHQSD	10	Unmodified	_EKGVDAHQSD_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.297119140625	2	543.246535	1084.47852	-0.4876	-0.00026489	-3.2203	-0.0017494	-3.7079	-0.0020143	543.2444921966243	73.531	1.1024	73.254	72.582	73.685	-0.2769					48	26	3	0	0	0	0.03519	1	8584	8584		42.864	25.499	1	505350	+		11401	36747	7847	7864	12852	12852					-0.06034404189472298
EKGVRVAPE	9	Unmodified	_EKGVRVAPE_					0	0	0			REV__ENST00000373225.7_1_9:130565640-130566634:+|nuORF	REV__ENST00000373225.7_1_9:130565640-130566634:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7672119140625	2	492.777274	983.539994	0.65264	0.00032161	-2.4582	-0.0012114	-1.8056	-0.00088975	492.77578754934734	40.989	0.49909	40.865	40.407	40.906	-0.12318					15	13	2	0	0	0	0.024447	1	3605	3605		40.778	0	1	78105	+		11402	31246	7848	7865	12853	12853					0.04756572300470907
EKHKALRLLHR	11	Unmodified	_EKHKALRLLHR_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;nc|ENSG00000179532|Q96M86-5|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.6239318847656	3	467.624755	1399.85244	0.37526	0.00017548	-2.5255	-0.001181	-2.1502	-0.0010055	467.6235097930596	107.2	0.48961	107.05	106.83	107.32	-0.15771					55	18	4	0	0	0	1.0921	1	13313	13313		13.508	0.55046	1	578270			11403	8901	7849	7866	12854	12854					0.16850320764910975
EKIANAPR	8	Unmodified	_EKIANAPR_					0	0	0			REV__ENSG00000076242|ENST00000231790|MLH1	REV__ENSG00000076242|ENST00000231790|MLH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.28497314453125	2	449.758884	897.503215	0.20255	9.1101E-05	-0.20055	-9.0198E-05	0.002007	9.0265E-07	449.75879145879975	34.595	0.66979	34.371	34.033	34.703	-0.22412					33	16	3	0	0	0	0.027866	1	2597	2597		63.306	26.147	1	692810	+		11404	20564	7850	7867	12855	12855					0.05036320474562217
EKIANAPR	8	Unmodified	_EKIANAPR_					0	0	0			REV__ENSG00000076242|ENST00000231790|MLH1	REV__ENSG00000076242|ENST00000231790|MLH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.28497314453125	2	449.758884	897.503215	-0.22196	-9.9827E-05	-1.1754	-0.00052863	-1.3973	-0.00062846	449.75885524437984	34.516	0.83061	34.309	33.86	34.69	-0.20696					56	20	5	0	0	0	0.027866	1	2581	2581		73.975	16.163	1	886310	+		11405	20564	7850	7867	12856	12856					0.05036320474562217
EKIARLRE	8	Unmodified	_EKIARLRE_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8062744140625	2	507.806365	1013.59818	0.09691	4.9212E-05	-0.18705	-9.4985E-05	-0.090139	-4.5773E-05	507.8060923163073	20.587	0.63474	20.419	20.197	20.832	-0.16774					19	12	2	0	0	0	0.96769	1	565	565		42.396	1.618	1	355040			11406	4290	7851	7868	12857	12857					0.09192253945752782
EKIGLLDL	8	Unmodified	_EKIGLLDL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.24786376953125	2	450.773668	899.532783	-0.048303	-2.1774E-05	0.77932	0.0003513	0.73102	0.00032952	450.773776942315	39.689	0.49508	39.459	39.128	39.623	-0.23021					22	12	2	0	0	0	0.027866	1	3384	3384		38.806	0	1	112190			11407	4256;18250	7852	7869	12858	12858					0.07899839700041866
EKIIPLVVK	9	Unmodified	_EKIIPLVVK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7838134765625	2	519.84971	1037.68487	-0.14787	-7.6869E-05	-0.61491	-0.00031966	-0.76278	-0.00039653	519.8493967268123	103.92	0.3997	103.93	103.75	104.15	0.0031357					14	9	2	0	0	0	0.024541	1	13312	13312		25.574	13.367	1	51608			11408	3121	7853	7870	12859	12859					0.1675324044761055
EKIIPLVVK	9	Unmodified	_EKIIPLVVK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.84971	1037.68487	-0.14368	-7.4691E-05	0.058422	3.0371E-05	-0.085256	-4.432E-05	519.8495813883757	104.03	0.39847	104.02	103.81	104.21	-0.0032196	0.15336	0.00045173	NaN	25.574	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47749			11409	3121	7853	7870							0.1675324044761055
EKIIPLVVK	9	Unmodified	_EKIIPLVVK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.84971	1037.68487	0.036896	1.9181E-05	-0.19473	-0.00010123	-0.15783	-8.205E-05	519.8495740635296	103.79	0.22348	103.66	103.56	103.78	-0.12724	-0.21097	0.00018853	NaN	25.574	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21755			11410	3121	7853	7870							0.1675324044761055
EKIKAAKEQV	10	Unmodified	_EKIKAAKEQV_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	572.2623291015625	2	572.340238	1142.66592	-0.28734	-0.00016446	-4.1233	-0.0023599	-4.4106	-0.0025244	572.3375431086515	42.899	0.3969	42.926	42.681	43.078	0.027237					14	10	2	0	0	0	0.03519	1	3947	3947		70.816	3.3225	1	137950	+		11411	20192	7854	7871	12860	12860					0.10029659085876119
EKIKAIGNEG	10	Unmodified	_EKIKAIGNEG_					0	0	0		chr13:114259398-114272278|192|24.55|0.66|5.22|+|0|CDC16,None|1	chr13:114259398-114272278|192|24.55|0.66|5.22|+|0|CDC16,None|1	chr13:114259398-114272278|192|24.55|0.66|5.22|+|0|CDC16,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.81884765625	2	529.795663	1057.57677	0.2188	0.00011592	3.5553	0.0018836	3.7741	0.0019995	529.7976569236013	70.244	0.44656	70.029	69.688	70.135	-0.21425					15	10	2	0	0	0	0.03519	1	8164	8164		30.318	0	1	122680			11412	331	7855	7872	12861	12861					0.05028824126384279
EKIKKEKLE	9	Unmodified	_EKIKKEKLE_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.850341796875	2	572.850438	1143.68632	3.5059	0.0020083	-3.6574	-0.0020951	-0.15153	-8.6804E-05	572.8482381729805	18.142	0.79698	17.899	17.677	18.474	-0.24256					37	15	4	0	0	0	0.091713	1	255	255		113.41	11.811	1	757570	+		11413	27175	7856	7873	12862	12862					0.12022829745706076
EKILDKLEV	9	Unmodified	_EKILDKLEV_					0	0	0		CHD5|p.L1653V|1|0.18|ENSG00000116254|chr1:6112954-6112954|G/C|missense_variant	CHD5|p.L1653V|1|0.18|ENSG00000116254|chr1:6112954-6112954|G/C|missense_variant	CHD5|p.L1653V|1|0.18|ENSG00000116254|chr1:6112954-6112954|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8211059570312	2	543.823889	1085.63323	-1.5584	-0.00084752	-3.0515	-0.0016595	-4.6099	-0.002507	543.8206942234357	47.55	2.311	47.609	47.214	49.525	0.059097					178	65	6	0	0	0	0.34489	1	4765	4765		69.628	2.134	1	25751000			11414	263	7857	7874	12863	12863					0.09383451963026346
EKILKKYVSVC	11	Unmodified	_EKILKKYVSVC_					0	0	0		ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.25701904296875	3	437.256458	1308.74754	0.14146	6.1854E-05	2.0007	0.0008748	2.1421	0.00093665	437.25730148495717	97.255	3.51	97.255	96.194	99.704	0					235	80	4	0	0	0	1.0408	1	12429	12429		27.644	2.5761	1	1246800			11415	10445	7858	7875	12864	12864					0.10552018453495293
EKILKKYVSVC	11	Unmodified	_EKILKKYVSVC_					0	0	0		ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.2565612792969	3	437.256458	1308.74754	1.1887	0.00051975	0.94786	0.00041446	2.1365	0.00093421	437.2568354988285	97.354	2.8643	97.354	96.484	99.348	-3.8147E-05					200	65	5	0	0	0	1.0408	1	12461	12461		27.644	1.7522	1	1114100			11416	10445	7858	7875	12865	12865					0.10552018453495293
EKILLNPTELL	11	Unmodified	_EKILLNPTELL_					0	0	0			REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8827514648438	2	641.884478	1281.7544	0.34308	0.00022022	-3.5873	-0.0023026	-3.2442	-0.0020824	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	0.94988	1	11585	11585		47.96	7.9014	1	1209200	+		11417	31273	7859	7876	12866	12866					0.12479654605704127
EKILLNPTELL	11	Unmodified	_EKILLNPTELL_					0	0	0			REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8829956054688	2	641.884478	1281.7544	0.76256	0.00048947	-3.9803	-0.0025549	-3.2178	-0.0020654	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0075	1	11890	11890		35.152	2.3396	1	3421300	+		11418	31273	7859	7876	12867	12867					0.12479654605704127
EKILTKYGV	9	Unmodified	_EKILTKYGV_					0	0	0		ENSG00000197953|ENST00000356517|AADACL2	ENSG00000197953|ENST00000356517|AADACL2	ENSG00000197953|ENST00000356517|AADACL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2971801757812	2	525.813325	1049.6121	-0.1793	-9.4279E-05	-0.21769	-0.00011446	-0.39699	-0.00020874	525.8129662449945	86.703	1.655	86.658	85.656	87.311	-0.045105					77	38	3	0	0	0	0.024477	1	10725	10725		27.882	0	1	206780			11419	10072	7860	7877	12868	12868					0.08927486654192762
EKINKIKWLP	10	Unmodified	_EKINKIKWLP_					0	0	0		nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-4|PPP2R2C;nc|ENSG00000074211|Q9Y2T4-2|PPP2R2C;ENSG00000074211|ENST00000382599|PPP2R2C	nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	634.892333984375	2	634.889898	1267.76524	0.034627	2.1984E-05	3.9084	0.0024814	3.943	0.0025034	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	1.0992	1	13315	13315		32.812	2.3088	1	2042800			11420	1525	7861	7878	12869	12869					0.14207101770648478
EKINKKHRK	9	Unmodified	_EKINKKHRK_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.866455078125	2	590.867289	1179.72002	-0.15177	-8.9679E-05	-1.0045	-0.00059355	-1.1563	-0.00068323	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931					85	41	5	0	0	0	0.92825	1	12686	12686		30.504	0	1	5173900	+		11421	20710	7862	7879	12870	12870					0.13735296028107769
EKINKKHRK	9	Unmodified	_EKINKKHRK_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.8665161132812	2	590.867289	1179.72002	-0.71437	-0.0004221	-1.0509	-0.00062095	-1.7653	-0.0010431	590.8669241812987	102.37	1.1116	102.25	101.89	103	-0.12666					79	26	5	0	0	0	0.92825	1	12709	12709		30.504	2.4222	1	4456200	+		11422	20710	7862	7879	12871	12871					0.13735296028107769
EKIPLSFLY	9	Unmodified	_EKIPLSFLY_					0	0	0			REV__ENST00000533161.5_1_16:2012676-2014626:-|nuORF	REV__ENST00000533161.5_1_16:2012676-2014626:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2769775390625	2	555.3157	1108.61685	-0.35095	-0.00019489	2.6469	0.0014698	2.2959	0.001275	555.3176184756412	41.695	0.19698	41.468	41.315	41.512	-0.2278					5	4	2	0	0	0	0.024477	1	3681	3681		35.618	0	1	83422	+		11423	24053	7863	7880	12872	12872					0.06688370796950949
EKIRMKVVF	9	Unmodified	_EKIRMKVVF_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.345458984375	2	575.344269	1148.67399	0.52304	0.00030093	1.5391	0.00088551	2.0621	0.0011864	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	0.89441	1	12304	12304		32.812	0.061884	1	4068000	+		11424	22511	7864	7881	12873	12873					0.105595148016846
EKIRMKVVF	9	Unmodified	_EKIRMKVVF_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.345703125	2	575.344269	1148.67399	0.8633	0.00049669	1.2952	0.00074518	2.1585	0.0012419	575.3449012149558	97.098	1.2775	96.961	96.613	97.89	-0.13671					99	28	5	0	0	0	0.85329	1	12037	12037		35.618	2.8059	1	3730600	+		11425	22511	7864	7881	12874	12874					0.105595148016846
EKISRDSDL	9	Unmodified	_EKISRDSDL_					0	0	0			REV__nc|ENSG00000120539|Q96GX5-2|MASTL	REV__nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7732543945312	2	531.774928	1061.5353	-0.19118	-0.00010167	0.084158	4.4753E-05	-0.10703	-5.6914E-05	531.775122620599	106.54	0.62704	106.54	106.23	106.86	0.0018311					46	21	3	0	0	0	0.80003	1	13617	13617		39.253	0	1	512730	+		11426	22539	7865	7882	12875	12875					0.006996433670337865
EKIVNLELV	9	Unmodified	_EKIVNLELV_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7994384765625	2	528.818607	1055.62266	-0.50015	-0.00026449	1.6295	0.00086172	1.1294	0.00059724	529.3215742269091	82.715	1.0672	82.742	82.402	83.469	0.026558					49	24	3	0	0	0	0.0242	1	10354	10354		79.713	41.901	1	370730			11427	1961	7866	7883	12876	12876					0.09707469308591499
EKIVNLELV	9	Unmodified	_EKIVNLELV_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.818607	1055.62266	1.4197	0.00075076	-0.23333	-0.00012339	1.1864	0.00062737	529.3206022103469	82.834	0.60126	82.724	82.466	83.067	-0.11006	0.026874	-0.0011766	NaN	79.713	26	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380910			11428	1961	7866	7883							0.09707469308591499
EKIVNLELV	9	Unmodified	_EKIVNLELV_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	528.818607	1055.62266	0.3863	0.00020428	0.12584	6.6546E-05	0.51214	0.00027083	528.8181804285152	82.796	0.86604	82.576	82.26	83.126	-0.22015	-0.12193	-0.00079669	NaN	79.713	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411660			11429	1961	7866	7883							0.09707469308591499
EKKAAAVK	8	Unmodified	_EKKAAAVK_					0	0	0			REV__EP400-SFSWAP|1|fusion	REV__EP400-SFSWAP|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8467102050781	2	422.766178	843.517802	-0.053214	-2.2497E-05	0.47638	0.0002014	0.42317	0.0001789	422.7662587876794	33.329	0.64292	33.098	32.835	33.478	-0.23107					32	15	3	0	0	0	0.027866	1	2350	2350		2.9294	0	1	270720	+		11430	35996	7867	7884	12877	12877					0.08978392622702813
EKKAEKKP	8	Unmodified	_EKKAEKKP_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3	REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.77410888671875	2	479.290017	956.565481	0.032555	1.5603E-05	-0.053332	-2.5561E-05	-0.020777	-9.9581E-06	479.28979312798833	31.175	0.74192	30.934	30.627	31.369	-0.24109					45	18	4	0	0	0	0.027866	1	2107	2107		49.442	0	1	4129400	+		11431	22365	7868	7885	12878	12878					0.0854604682289164
EKKAEKKP	8	Unmodified	_EKKAEKKP_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3	REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.77410888671875	2	479.290017	956.565481	0.43403	0.00020803	-0.49124	-0.00023545	-0.05721	-2.742E-05	479.28957605220967	31.899	0.83057	31.662	31.299	32.13	-0.23666					34	19	2	0	0	0	0.027866	1	2107	2107		49.442	0	1	746440	+		11432	22365	7868	7885	12879	12879					0.0854604682289164
EKKAFYAR	8	Unmodified	_EKKAFYAR_					0	0	0			REV__ENST00000427464.1_3_21:42801441-42804029:+|nuORF	REV__ENST00000427464.1_3_21:42801441-42804029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.82440185546875	2	506.782359	1011.55016	-0.62491	-0.00031669	-1.6533	-0.00083786	-2.2782	-0.0011546	506.7811351046703	43.074	0.2922	43.074	42.932	43.224	0					10	7	2	0	0	0	0.027866	1	4001	4001		30.504	7.4612	1	72643	+		11433	32297	7869	7886	12880	12880					0.04485180025699265
EKKANKISL	9	Unmodified	_EKKANKISL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7466430664062	2	515.816399	1029.61824	-0.1437	-7.4121E-05	0.91153	0.00047018	0.76783	0.00039606	515.8166513358995	23.833	0.63943	23.653	23.318	23.958	-0.17989					35	14	4	0	0	0	0.024374	1	1000	1000		49.442	24.922	1	147580	+		11434	25017	7870	7887	12881	12881					0.10462004885698661
EKKARTGRI	9	Unmodified	_EKKARTGRI_					0	0	0		nc|ENSG00000113303|Q6UX41-2|BTNL8;nc|ENSG00000113303|Q6UX41-3|BTNL8;nc|ENSG00000113303|Q6UX41-5|BTNL8	nc|ENSG00000113303|Q6UX41-2|BTNL8	nc|ENSG00000113303|Q6UX41-2|BTNL8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.78564453125	2	529.825089	1057.63563	-0.55393	-0.00029348	4.4849	0.0023762	3.931	0.0020827	529.8273709242518	53.222	0.61224	53.318	53.017	53.629	0.095669					39	16	3	0	0	0	0.024292	1	5623	5623		40.778	1.5253	1	819340			11435	18182	7871	7888	12882	12882					0.10911345211366097
EKKAVIPLVIV	11	Unmodified	_EKKAVIPLVIV_					0	0	0		PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1	PTPRZ1-TSPAN33|2|fusion	PTPRZ1-TSPAN33|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5924072265625	3	403.604075	1207.7904	0.043096	1.7394E-05	-2.5646	-0.0010351	-2.5215	-0.0010177	403.6032994905749	38.113	0.16115	37.933	37.809	37.971	-0.17929					6	4	2	0	0	0	0.024759	1	3107	3107		8.7993	2.7983	1	51303			11436	19011	7872	7889	12883	12883					0.1948115657321523
EKKAYNLL	8	Unmodified	_EKKAYNLL_					0	0	0			REV__ENSG00000113368|ENST00000261366|LMNB1	REV__ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2686462402344	2	489.784567	977.554582	-0.54676	-0.00026779	0.092614	4.5361E-05	-0.45414	-0.00022243	489.7844423670567	41.522	1.0835	41.386	41.099	42.182	-0.13553					68	28	4	0	0	0	0.027866	1	3646	3646		34.173	0	1	1648700	+		11437	22064	7873	7890	12884	12884					0.06490644448604144
EKKDPEKEP	9	Unmodified	_EKKDPEKEP_					0	0	0		nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3071899414062	2	550.285128	1098.5557	-0.47054	-0.00025893	-1.4112	-0.00077658	-1.8818	-0.0010355	550.2843366984322	52.357	0.4352	52.357	52.16	52.595	0					23	10	3	0	0	0	0.024261	1	5602	5602		54.776	1.8396	1	410010			11438	4905	7874	7891	12885	12885					0.01036814026861066
EKKDPEKEP	9	Unmodified	_EKKDPEKEP_					0	0	0		nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.285128	1098.5557	-0.2397	-0.0001319	-0.30704	-0.00016896	-0.54674	-0.00030086	550.2857348890487	52.558	0.3602	52.368	52.029	52.389	-0.18982	0.017134	0.0012118	NaN	45.972	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153070			11439	4905	7874	7891							0.01036814026861066
EKKEKGYPK	9	Unmodified	_EKKEKGYPK_					0	0	0		ENST00000525057.5_1_11:6458881-6461709:-|nuORF;ENSG00000110169|ENST00000265983|HPX	ENST00000525057.5_1_11:6458881-6461709:-|nuORF	ENST00000525057.5_1_11:6458881-6461709:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.8086547851562	2	553.813856	1105.61316	-0.26252	-0.00014539	0.083401	4.6189E-05	-0.17912	-9.9199E-05	553.8135262481005	45.549	0.76245	45.45	45.084	45.847	-0.099445					47	18	6	0	0	0	0.024292	1	4381	4381		40.778	0	1	1320900			11440	3026	7875	7892	12886	12886					0.06457701023077789
EKKGPQGVR	9	Unmodified	_EKKGPQGVR_					0	0	0		CON__P05784	CON__P05784	CON__P05784	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.25897216796875	2	499.790715	997.566878	0.047145	2.3563E-05	-0.82345	-0.00041155	-0.77631	-0.00038799	499.7906651396245	32.927	0.40746	32.731	32.613	33.021	-0.19579					11	9	2	0	0	0	0.024523	1	2331	2331		21.96	9.753	1	66393		+	11441	511	7876	7893	12887	12887					0.06799680911660744
EKKIRLLRVDK	11	Unmodified	_EKKIRLLRVDK_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.62127685546875	3	466.636549	1396.88782	0.15471	7.2192E-05	2.6212	0.0012232	2.776	0.0012954	466.63764413427725	46.584	0.27695	46.487	46.368	46.645	-0.096649					15	7	3	0	0	0	0.02486	1	4504	4504		8.7993	3.8936	1	628180	+		11442	19836	7877	7894	12888	12888					0.2052493850205792
EKKIVKLL	8	Unmodified	_EKKIVKLL_					0	0	0			REV__DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	REV__DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.8365478515625	2	485.836603	969.658653	-0.12199	-5.9267E-05	0.06596	3.2046E-05	-0.05603	-2.7221E-05	485.8365079384279	33.763	0.94017	33.538	33.239	34.179	-0.22466					65	23	4	0	0	0	0.93274	1	2455	2455		47.916	0	1	5251400	+		11443	19692	7878	7895	12889	12889					0.1726097127615276
EKKIVKLL	8	Unmodified	_EKKIVKLL_					0	0	0			REV__DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	REV__DNAJB7|p.Y157Ifs*63|1|0.22|ENSG00000172404|chr22:40861527-40861527|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.83642578125	2	485.836603	969.658653	-0.33934	-0.00016487	0.20807	0.00010109	-0.13127	-6.3777E-05	485.83661434416143	33.74	1.1642	33.54	33.209	34.373	-0.20019					79	29	4	0	0	0	0.6248	1	2442	2442		73.975	0	1	5154200	+		11444	19692	7878	7895	12890	12890					0.1726097127615276
EKKKAVPV	8	Unmodified	_EKKKAVPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7900085449219	2	449.789653	897.564752	0.31116	0.00013996	2.3988	0.001079	2.71	0.0012189	449.789534319495	19.879	0.48599	19.718	19.43	19.916	-0.1608					12	9	2	0	0	0	0.027866	1	497	497		31.955	7.4357	1	13875	+		11445	25017	7879	7896	12891	12891					0.11187252173851903
EKKKGLGKP	9	Unmodified	_EKKKGLGKP_					0	0	0			REV__nc|ENSG00000160838|Q8N4P6-2|LRRC71	REV__nc|ENSG00000160838|Q8N4P6-2|LRRC71	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.78509521484375	2	492.813659	983.612765	-0.21399	-0.00010546	-0.34995	-0.00017246	-0.56394	-0.00027792	492.81349423451826	47.709	0.35384	47.556	47.441	47.795	-0.15301					15	10	2	0	0	0	0.024427	1	4779	4779		42.396	19.354	1	117070	+		11446	25351	7880	7897	12892	12892					0.12030326093906751
EKKKIVTE	8	Unmodified	_EKKKIVTE_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2707824707031	2	487.797675	973.580796	-0.36178	-0.00017647	-0.31217	-0.00015227	-0.67394	-0.00032875	487.7973662435528	23.099	0.45952	22.915	22.693	23.153	-0.18382					13	9	2	0	0	0	0.027866	1	876	876		14.865	1.0895	1	77325	+		11447	26603	7881	7898	12893	12893					0.09294913620090028
EKKKSIVK	8	Unmodified	_EKKKSIVK_					0	0	0			REV__ENST00000396418.6_1_8:79485057-79485132:+|nuORF	REV__ENST00000396418.6_1_8:79485057-79485132:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2829284667969	2	480.316035	958.617516	0.36798	0.00017675	3.5867	0.0017228	3.9547	0.0018995	480.31766264452904	51.869	0.54344	51.751	51.504	52.048	-0.11876					22	14	2	0	0	0	0.027866	1	5318	5318		35.618	0	1	314220	+		11448	31735	7882	7899	12894	12894					0.13655210236652238
EKKMAATLFG	10	Unmodified	_EKKMAATLFG_					0	0	0		nc|ENSG00000115841|Q96LZ7-2|RMDN2;nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;ENSG00000115841|ENST00000354545|RMDN2	nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-2|RMDN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.29541015625	2	548.296985	1094.57942	-0.17387	-9.5334E-05	-3.1989	-0.0017539	-3.3728	-0.0018493	548.2954263427797	19.621	2.2207	19.621	19.317	21.537	0					119	45	5	0	0	0	1.0719	1	468	468		36.447	3.6343	1	7603900			11449	18193	7883	7900	12895	12895					0.03590956259677114
EKKQPIVK	8	Unmodified	_EKKQPIVK_					0	0	0			REV__ENST00000389622.6_1_3:97596741-97596864:+|nuORF	REV__ENST00000389622.6_1_3:97596741-97596864:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.22711181640625	2	485.30821	968.601866	-0.2755	-0.0001337	-0.92759	-0.00045017	-1.2031	-0.00058387	485.3072930626415	54.613	0.32711	54.467	54.281	54.608	-0.14609					13	8	2	0	0	0	0.027866	1	5833	5833		10.866	0	1	90710	+		11450	31574	7884	7901	12896	12896					0.11630923719621933
EKKRIGFA	8	Unmodified	_EKKRIGFA_					0	0	0			REV__ENSG00000118473|ENST00000371037|SGIP1;REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1	REV__ENSG00000118473|ENST00000371037|SGIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.24468994140625	2	474.784902	947.55525	0.14775	7.0148E-05	-0.78318	-0.00037184	-0.63543	-0.00030169	474.7843966781704	46.098	0.54984	46.149	45.758	46.308	0.051395					23	15	2	0	0	0	0.027866	1	4406	4406		57.811	0	1	406900	+		11451	22406;36603	7885	7902	12897	12897					0.07937483888326824
EKKSALASV	9	Unmodified	_EKKSALASV_					0	0	0		ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2534484863281	2	466.7742	931.533846	-0.15617	-7.2895E-05	0.18256	8.5215E-05	0.026395	1.2321E-05	466.7742016179212	39.982	0.76165	39.757	39.46	40.222	-0.225					36	19	3	0	0	0	0.024209	1	3460	3460		31.53	0	1	359720			11452	3950	7886	7903	12898	12898					0.06534054068947626
EKKSSSRPRPR	11	Unmodified	_EKKSSSRPRPR_					0	0	0			REV__ENST00000522720.1_1_8:101733810-101734948:-|nuORF	REV__ENST00000522720.1_1_8:101733810-101734948:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2432556152344	3	443.25662	1326.74803	-0.43418	-0.00019245	-0.24987	-0.00011076	-0.68405	-0.00030321	443.2571849006796	37.543	1.4872	37.48	36.749	38.236	-0.063389					98	41	3	0	0	0	0.024757	1	3187	3187		28.577	2.5133	1	695580	+		11453	34304	7887	7904	12899	12899					0.09772574217549845
EKKWIVLV	8	Unmodified	_EKKWIVLV_					0	0	0			REV__ENST00000547002.5_1_12:48152383-48154151:+|nuORF	REV__ENST00000547002.5_1_12:48152383-48154151:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.76788330078125	2	507.820953	1013.62735	-1.0849	-0.00055094	-2.563	-0.0013016	-3.6479	-0.0018525	507.81964747283655	60.726	0.47094	60.55	60.362	60.833	-0.1761					17	11	2	0	0	0	0.027866	1	6812	6812		52.299	11.521	1	124650	+		11454	34855	7888	7905	12900	12900					0.1210839824203731
EKLALFLRVY	10	Unmodified	_EKLALFLRVY_					0	0	0		nc|ENSG00000247315|Q9NUD5-2|ZCCHC3;ENSG00000247315|ENST00000500893|ZCCHC3	nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	626.3799438476562	2	626.376623	1250.73869	0.42063	0.00026347	4.4276	0.0027734	4.8483	0.0030368	626.3792952337366	104.3	0.95153	104.3	103.98	104.93	0.0031357					73	26	4	0	0	0	1.1081	1	13330	13330		26.693	0	1	2383900			11455	10829	7889	7906	12901	12901					0.12335412879338037
EKLCKLNYHH	10	Unmodified	_EKLCKLNYHH_					0	0	0			REV__nc|ENSG00000064933|P54277-4|PMS1	REV__nc|ENSG00000064933|P54277-4|PMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7380065917969	3	428.888768	1283.64448	-0.89358	-0.00038325	-2.625	-0.0011258	-3.5186	-0.0015091	429.22238307612594	39.443	0.6741	39.344	39.054	39.728	-0.098755					36	18	3	0	0	0	0.03519	1	3422	3422		21.686	1.6553	1	338460	+		11456	20296	7890	7907	12902	12902					0.013999507855260163
EKLDKMIRS	9	Unmodified	_EKLDKMIRS_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.31396484375	2	560.313166	1118.61178	-1.7783	-0.00099639	2.3969	0.001343	0.61864	0.00034663	560.3143872654739	92.613	1.1285	92.469	92.047	93.175	-0.14356					72	26	5	0	0	0	0.20016	1	11398	11398		89.029	6.2783	1	3551700			11457	9470	7891	7908	12903	12903					0.057217436626842755
EKLDNLPKP	9	Unmodified	_EKLDNLPKP_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3115234375	2	527.300581	1052.58661	-1.7924	-0.00094511	-3.3798	-0.0017822	-5.1721	-0.0027273	527.2985274299804	20.649	0.57668	20.649	20.323	20.9	0					14	11	2	0	0	0	0.024344	1	525	525		45.972	0	1	10421			11458	4629	7892	7909	12904	12904					0.06242012131770025
EKLFDNRAN	9	Unmodified	_EKLFDNRAN_					0	0	0			REV__ENSG00000162733|ENST00000367921|DDR2	REV__ENSG00000162733|ENST00000367921|DDR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8298950195312	2	553.783087	1105.55162	-0.2337	-0.00012942	-0.026101	-1.4454E-05	-0.2598	-0.00014388	553.7844325508355	87.562	0.25332	87.384	87.238	87.491	-0.17875					6	5	2	0	0	0	0.024484	1	10646	10646		23.523	0	1	25778	+		11459	25481	7893	7910	12905	12905					0.0030676932381084043
EKLFSNAVIL	10	Unmodified	_EKLFSNAVIL_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.331882	1132.64921	-0.025912	-1.4701E-05	-3.6495	-0.0020705	-3.6754	-0.0020852	567.3297015547128	93.386	0.56843	93.242	92.914	93.483	-0.1441					23	12	2	0	0	0	1.0909	1	11480	11480		33.922	3.418	1	914870	+		11460	27801	7894	7911	12906	12906					0.0881915819995811
EKLFTFIS	8	Unmodified	_EKLFTFIS_					0	0	0			REV__ENST00000354828.7_1_21:27143132-27143276:+|nuORF	REV__ENST00000354828.7_1_21:27143132-27143276:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2995300292969	2	492.773668	983.532783	-0.67515	-0.0003327	1.4841	0.0007313	0.8089	0.0003986	492.7740086441566	90.254	0.45489	90.254	90.015	90.469	0					23	10	3	0	0	0	0.027866	1	11415	11415		38.806	12.01	1	166890	+		11461	30763	7895	7912	12907	12907					0.04035839700043198
EKLGPKQVF	9	Unmodified	_EKLGPKQVF_					0	0	0			REV__ENST00000171111.9_2_19:10597191-10597353:-|nuORF	REV__ENST00000171111.9_2_19:10597191-10597353:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.30419921875	2	523.305667	1044.59678	-0.28114	-0.00014712	-3.6286	-0.0018988	-3.9097	-0.002046	523.3036290350911	89.646	0.60334	89.518	89.242	89.846	-0.12774					45	13	4	0	0	0	0.83071	1	10957	10957		37.159	3.6435	1	897320	+		11462	29280	7896	7913	12908	12908					0.0762661985700106
EKLGRFTKEEK	11	Unmodified	_EKLGRFTKEEK_					0	0	0		ENST00000591780.1_1_18:12075195-12075588:-|nuORF	ENST00000591780.1_1_18:12075195-12075588:-|nuORF	ENST00000591780.1_1_18:12075195-12075588:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.79339599609375	3	455.589265	1363.74596	0.44246	0.00020158	-0.85798	-0.00039089	-0.41551	-0.0001893	455.58885157709597	18.184	0.44181	18.052	17.762	18.203	-0.13147					13	8	2	0	0	0	0.024739	1	214	214		35.178	14.146	1	38290			11463	17361	7897	7914	12909	12909					0.07864100689084808
EKLGRFTKEEK	11	Unmodified	_EKLGRFTKEEK_					0	0	0		ENST00000591780.1_1_18:12075195-12075588:-|nuORF	ENST00000591780.1_1_18:12075195-12075588:-|nuORF	ENST00000591780.1_1_18:12075195-12075588:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	455.589265	1363.74596	0.20058	9.1384E-05	-0.038501	-1.7541E-05	0.16208	7.3844E-05	455.58923592260015	18.562	0.3469	18.358	18.113	18.46	-0.20371	0.25456	0.0018625	NaN	35.178	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21094			11464	17361	7897	7914							0.07864100689084808
EKLHKIRTLN	10	Unmodified	_EKLHKIRTLN_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;nc|ENSG00000074706|Q8WWN9|IPCEF1;ENSG00000074706|ENST00000367220|IPCEF1;ENST00000522590.1_1_6:154480965-154534056:-|nuORF	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.92230224609375	3	417.922578	1250.7459	0.21081	8.8103E-05	-1.0544	-0.00044065	-0.84357	-0.00035255	417.9221205737804	104.31	0.87881	104.32	103.91	104.79	0.0031357					68	23	4	0	0	0	1.1138	1	13361	13361		17.833	2.5	1	2248100			11465	18817	7898	7915	12910	12910					0.13056145479754377
EKLHKIRTLN	10	Unmodified	_EKLHKIRTLN_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;nc|ENSG00000074706|Q8WWN9|IPCEF1;ENSG00000074706|ENST00000367220|IPCEF1;ENST00000522590.1_1_6:154480965-154534056:-|nuORF	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.9225769042969	3	417.922578	1250.7459	0.28462	0.00011895	-1.0338	-0.00043203	-0.74913	-0.00031308	417.9220987365481	104.41	1.0474	104.4	104.07	105.12	-0.0032196					79	30	4	0	0	0	1.1213	1	13336	13336		21.78	1.75	1	2347400			11466	18817	7898	7915	12911	12911					0.13056145479754377
EKLHKIRTLN	10	Unmodified	_EKLHKIRTLN_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;nc|ENSG00000074706|Q8WWN9|IPCEF1;ENSG00000074706|ENST00000367220|IPCEF1;ENST00000522590.1_1_6:154480965-154534056:-|nuORF	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.9222717285156	3	417.922578	1250.7459	0.13055	5.4558E-05	-0.96193	-0.00040201	-0.83138	-0.00034745	417.9221244956388	104.43	1.2023	104.31	103.74	104.94	-0.12561					97	33	4	0	0	0	1.1113	1	12980	12980		16.53	0	1	2252700			11467	18817	7898	7915	12912	12912					0.13056145479754377
EKLHKIRTLN	10	Unmodified	_EKLHKIRTLN_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;nc|ENSG00000074706|Q8WWN9|IPCEF1;ENSG00000074706|ENST00000367220|IPCEF1;ENST00000522590.1_1_6:154480965-154534056:-|nuORF	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.9220275878906	3	417.922578	1250.7459	0.65766	0.00027485	-1.5961	-0.00066703	-0.9384	-0.00039218	417.9218501915897	104.54	0.91847	104.38	104.02	104.93	-0.16791					76	28	4	0	0	0	1.1165	2	12996	12996;13008		21.78	3.2494	1	1607600			11468	18817	7898	7915	12913;12914	12913					0.13056145479754377
EKLIPGPLSPV	11	Unmodified	_EKLIPGPLSPV_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3455200195312	2	575.347532	1148.68051	-1.1631	-0.00066918	-2.3888	-0.0013744	-3.5519	-0.0020436	575.3460130844637	97.061	1.8236	97.061	96.615	98.439	0					112	41	5	0	0	0	1.0075	1	12380	12380		35.152	2.3396	1	3789000			11469	10346	7899	7916	12915	12915					0.1121173123403878
EKLISLFTLN	10	Unmodified	_EKLISLFTLN_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.343505859375	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0909	1	11604	11604		33.922	3.6039	1	13724000	+		11470	27624;37007	7900	7917	12916	12916					0.09415427371459373
EKLKALLMG	9	Oxidation (M)	_EKLKALLM(Oxidation (M))G_		EKLKALLM(1)G		EKLKALLM(82)G	0	0	1			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7279968261719	2	509.801903	1017.58925	-0.39075	-0.00019921	-1.3805	-0.00070379	-1.7713	-0.00090299	510.3027116920378	54.823	0.4569	54.921	54.626	55.083	0.098015					16	12	2	0	0	0	0.023181	1	5938	5938		82.305	8.05	1	79445	+		11471	25684	7901	7918	12917	12917		763			0.08116144265079583
EKLKKELEE	9	Unmodified	_EKLKKELEE_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.3218994140625	2	573.324254	1144.63395	0.13955	8.0007E-05	-0.58927	-0.00033784	-0.44972	-0.00025784	573.3238622701145	107.09	0.58153	107.09	106.86	107.44	-0.003479					29	18	2	0	0	0	0.80003	1	13710	13710		39.253	5.0803	1	191700			11472	181	7902	7919	12918	12918					0.0674224661208882
EKLKLEEEK	9	Unmodified	_EKLKLEEEK_					0	0	0		nc|ENSG00000163126|Q86SG2-2|ANKRD23;ENSG00000163126|ENST00000318357|ANKRD23	nc|ENSG00000163126|Q86SG2-2|ANKRD23	nc|ENSG00000163126|Q86SG2-2|ANKRD23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.323974609375	2	573.324254	1144.63395	0.17561	0.00010068	-0.57816	-0.00033147	-0.40255	-0.00023079	573.32394098064	107.15	0.61134	107.15	106.86	107.47	0					28	15	2	0	0	0	0.87448	1	13767	13767		34.173	1.3601	1	179510			11473	7040	7903	7920	12919	12919					0.0674224661208882
EKLKQISI	8	Unmodified	_EKLKQISI_					0	0	0			REV__nc|ENSG00000020577|Q9UPU9-3|SAMD4A	REV__nc|ENSG00000020577|Q9UPU9-3|SAMD4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.80010986328125	2	479.800217	957.585882	0.78443	0.00037637	-1.2611	-0.0006051	-0.47671	-0.00022873	479.7993807832015	22.109	0.79659	21.92	21.531	22.327	-0.18894					33	16	4	0	0	0	0.80469	1	762	762		58.782	0	1	425940	+		11474	19993	7904	7921	12920	12920					0.1053921748269886
EKLLASEPL	9	Unmodified	_EKLLASEPL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant;RIPK4|p.I213Rfs*24|1|0.18|ENSG00000183421|chr21:41749189-41749190|-/TAATC|frameshift_variant;RIPK4|p.V237Gfs*37|1|0.1|ENSG00000183421|chr21:41746737-41746738|-/A|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7662658691406	2	500.289682	998.564812	-0.039977	-2E-05	0.63814	0.00031926	0.59817	0.00029926	500.289935821366	37.022	0.73546	37.055	36.678	37.413	0.032269					41	18	3	0	0	0	0.024261	1	2875	2875		64.207	3.2353	1	277660			11475	9226	7905	7922	12921	12921					0.06547207383187015
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3563842773438	2	611.358096	1220.70164	-0.81331	-0.00049722	-2.409	-0.0014728	-3.2224	-0.00197	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	0.99129	1	12056	12056		38.754	4.832	1	11166000	+		11476	34518	7906	7923	12922	12922					0.10011696542937898
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3544921875	2	611.358096	1220.70164	-0.79597	-0.00048662	-2.4967	-0.0015264	-3.2927	-0.002013	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	0.98542	1	11550	11550		40.058	8.5284	1	4189200	+		11477	34518	7906	7923	12923	12923					0.10011696542937898
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3560791015625	2	611.358096	1220.70164	-1.352	-0.00082658	-1.8159	-0.0011102	-3.168	-0.0019368	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.013	1	11909	11909		33.922	2.3918	1	11699000	+		11478	34518	7906	7923	12924	12924					0.10011696542937898
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3546752929688	2	611.358096	1220.70164	-2.7988	-0.0017111	-0.66999	-0.00040961	-3.4688	-0.0021207	611.3575286656617	92.522	1.7327	92.379	91.617	93.35	-0.14356					150	40	4	0	0	0	1.0183	1	11272	11272		32.751	4.8683	1	4645400	+		11479	34518	7906	7923	12925	12925					0.10011696542937898
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3563232421875	2	611.358096	1220.70164	0.14541	8.89E-05	-3.232	-0.0019759	-3.0866	-0.001887	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.013	2	11721	11626;11721		33.922	1.1092	1	13233000	+		11480	34518	7906	7923	12926;12927	12927					0.10011696542937898
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3524169921875	2	611.358096	1220.70164	-0.19635	-0.00012004	-3.3434	-0.002044	-3.5398	-0.0021641	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	0.94988	2	11223	11223;11354		47.96	7.9014	1	5237500	+		11481	34518	7906	7923	12928;12929	12928					0.10011696542937898
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.356201171875	2	611.358096	1220.70164	-0.45812	-0.00028007	-2.6812	-0.0016391	-3.1393	-0.0019192	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.013	1	11586	11586		33.922	1.1092	1	13365000	+		11482	34518	7906	7923	12930	12930					0.10011696542937898
EKLLIVDAL	9	Unmodified	_EKLLIVDAL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.81317138671875	2	507.3157	1012.61685	-0.98186	-0.00049811	-1.6226	-0.00082317	-2.6044	-0.0013213	507.3157153456694	91.808	2.0043	91.808	91.299	93.303	0					87	47	5	0	0	0	0.024466	1	11829	11829		39.253	17.293	1	427130	+		11483	21097	7907	7924	12931	12931					0.11104370796954299
EKLLIVDAL	9	Unmodified	_EKLLIVDAL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.3157	1012.61685	0.35394	0.00017956	-1.4219	-0.00072135	-1.068	-0.00054179	507.3151116278376	91.897	1.2739	91.907	91.572	92.846	0.0094147	0.17617	-0.0013582	NaN	30.318	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483880	+		11484	21097	7907	7924							0.11104370796954299
EKLLIVDAL	9	Unmodified	_EKLLIVDAL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.3157	1012.61685	-1.4464	-0.00073379	1.245	0.00063159	-0.20144	-0.00010219	507.31620885796735	91.707	0.76891	91.558	91.353	92.122	-0.1487	-0.17239	0.0013477	NaN	30.318	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131690	+		11485	21097	7907	7924							0.11104370796954299
EKLLIVDAL	9	Unmodified	_EKLLIVDAL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.3157	1012.61685	-0.45151	-0.00022906	0.18449	9.3593E-05	-0.26703	-0.00013547	507.31572087115205	91.791	0.7707	91.667	91.371	92.141	-0.12341	-0.06312	0.00027173	NaN	30.318	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136810	+		11486	21097	7907	7924							0.11104370796954299
EKLLIVDAL	9	Unmodified	_EKLLIVDAL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.3157	1012.61685	0.0169	8.5737E-06	-0.3942	-0.00019999	-0.3773	-0.00019141	507.31542649222723	91.779	1.2191	91.64	91.444	92.663	-0.13942	-0.090848	-0.00031543	NaN	30.318	37	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151110	+		11487	21097	7907	7924							0.11104370796954299
EKLLLAAR	8	Unmodified	_EKLLLAAR_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000477325.1_1_3:39449144-39450287:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000477325.1_1_3:39449144-39450287:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7514343261719	2	457.295102	912.575651	-0.41996	-0.00019204	0.43994	0.00020118	0.019978	9.136E-06	457.29520746910845	60.863	0.63629	60.934	60.603	61.239	0.071129					32	16	3	0	0	0	0.027866	1	6890	6890		33.516	0	1	479780			11488	7773;15111	7908	7925	12932	12932					0.11586654548125352
EKLLLMSYRL	10	Unmodified	_EKLLLMSYRL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3690795898438	2	633.367941	1264.72133	0.56004	0.00035471	1.3433	0.00085083	1.9034	0.0012055	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	1.0719	1	12088	12088		36.447	1.2947	1	8480900			11489	3505	7909	7926	12933	12933					0.09955749282016768
EKLLRLGPK	9	Unmodified	_EKLLRLGPK_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7705688476562	2	527.342584	1052.67061	-0.39473	-0.00020816	-0.22962	-0.00012109	-0.62435	-0.00032925	527.3424408331382	47.528	0.69578	47.431	47.122	47.818	-0.096649					49	18	4	0	0	0	0.024541	1	4716	4716		15.642	0	1	362780			11490	2196	7910	7927	12934	12934					0.1463858801932929
EKLLSKDW	8	Unmodified	_EKLLSKDW_					0	0	0		nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7279968261719	2	509.782025	1017.5495	-0.18995	-9.6831E-05	0.093484	4.7656E-05	-0.096463	-4.9175E-05	509.7818297935364	54.688	0.72828	54.787	54.491	55.22	0.098015					49	20	4	0	0	0	0.027866	1	5938	5938		96.19	18.873	1	1809400			11491	3055;4805	7911	7928	12935	12935					0.04142340585997317
EKLLSTLAR	9	Unmodified	_EKLLSTLAR_					0	0	0		ENST00000244745.3_2_6:21594329-21594497:+|nuORF	ENST00000244745.3_2_6:21594329-21594497:+|nuORF	ENST00000244745.3_2_6:21594329-21594497:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7949829101562	2	515.816399	1029.61824	1.9152	0.00098788	-0.63793	-0.00032906	1.2772	0.00065882	515.8155649431255	23.865	0.73981	23.682	23.33	24.069	-0.18298					40	16	3	0	0	0	0.024438	1	957	957		44.377	3.599	1	153900			11492	11305	7912	7929	12936	12936					0.10462004885698661
EKLNWRGK	8	Unmodified	_EKLNWRGK_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3129272460938	2	515.793258	1029.57196	0.51571	0.000266	-0.13722	-7.0778E-05	0.37849	0.00019522	516.2936169380667	88.371	0.46892	88.343	88.05	88.519	-0.027664					16	10	2	0	0	0	0.027866	1	11067	11067		29.15	0	1	135540	+		11493	25917	7913	7930	12937	12937					0.05835984774262215
EKLPRFPF	8	Unmodified	_EKLPRFPF_					0	0	0		ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7813110351562	2	517.295102	1032.57565	-0.24491	-0.00012669	-4.4156	-0.0022842	-4.6605	-0.0024109	517.292224565766	42.309	0.3655	42.177	41.953	42.319	-0.13219					15	10	2	0	0	0	0.027866	1	3830	3830		35.201	16.876	1	134740			11494	1651	7914	7931	12938	12938					0.06066654548112638
EKLPRFPF	8	Unmodified	_EKLPRFPF_					0	0	0		ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.78125	2	517.295102	1032.57565	-0.46216	-0.00023907	-3.6107	-0.0018678	-4.0729	-0.0021069	517.2931181199058	41.287	1.0474	41.31	41.005	42.053	0.023003					71	29	3	0	0	0	0.027866	1	3749	3749		44.531	21.489	1	4340400			11495	1651	7914	7931	12939	12939					0.06066654548112638
EKLPVLTAM	9	Unmodified	_EKLPVLTAM_					0	0	0		ENST00000394609.6_1_2:55200100-55200154:-|nuORF	ENST00000394609.6_1_2:55200100-55200154:-|nuORF	ENST00000394609.6_1_2:55200100-55200154:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904357910156	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.83071	1	10525	10525		37.159	1.5408	1	10557000			11496	13493	7915	7932	12940	12940					0.06244455373712299
EKLPVRPHPPL	11	Unmodified	_EKLPVRPHPPL_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8823852539062	2	641.885147	1281.75574	-3.1216	-0.0020037	-0.98305	-0.000631	-4.1046	-0.0026347	641.8843635101357	93.215	1.2308	93.075	92.21	93.441	-0.13995					77	28	4	0	0	0	1.0292	1	11471	11471		30.318	2.2362	1	566990	+		11497	29216	7916	7933	12941	12941					0.12613333485114708
EKLPVRPHPPL	11	Unmodified	_EKLPVRPHPPL_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8825073242188	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	0.9728	1	11854	11854		42.864	0.46813	1	3558500	+		11498	29216	7916	7933	12942	12942					0.12613333485114708
EKLPVRPHPPL	11	Unmodified	_EKLPVRPHPPL_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.88232421875	2	641.885147	1281.75574	-0.70618	-0.00045328	-3.5966	-0.0023086	-4.3028	-0.0027619	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	0.9728	2	11846	11833;11846		42.864	4.8343	1	3453200	+		11499	29216	7916	7933	12943;12944	12944					0.12613333485114708
EKLQDHNGQET	11	Unmodified	_EKLQDHNGQET_					0	0	0			REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3	REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.74517822265625	3	433.537229	1297.58986	-0.64511	-0.00027968	1.7966	0.00077888	1.1515	0.0004992	433.8724310270611	27.941	0.35741	27.772	27.61	27.967	-0.16816					11	8	2	0	0	0	0.02477	1	1606	1606		17.167	0	1	52843	+		11500	24249	7917	7934	12945	12945					-0.047033895522190505
EKLQKRWDWRW	11	Unmodified	_EKLQKRWDWRW_					0	0	0		nc|ENSG00000166321|Q86X67-4|NUDT13	nc|ENSG00000166321|Q86X67-4|NUDT13	nc|ENSG00000166321|Q86X67-4|NUDT13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.84814453125	3	544.291553	1629.85283	-0.25122	-0.00013674	-0.65974	-0.00035909	-0.91096	-0.00049583	544.6255273227287	20.36	0.73429	20.192	20.002	20.736	-0.16774					24	14	3	0	0	0	0.024888	1	601	601		3.2113	0	1	48777			11501	18474	7918	7935	12946	12946					0.06309695694108086
EKLQKRWDWRW	11	Unmodified	_EKLQKRWDWRW_					0	0	0		nc|ENSG00000166321|Q86X67-4|NUDT13	nc|ENSG00000166321|Q86X67-4|NUDT13	nc|ENSG00000166321|Q86X67-4|NUDT13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.847412109375	3	544.291553	1629.85283	-0.88892	-0.00048383	-0.31758	-0.00017286	-1.2065	-0.00065669	544.2913984282111	20.594	0.74416	20.371	20.167	20.911	-0.22344					27	14	3	0	0	0	0.02486	1	598	598		12.957	9.5488	1	44101			11502	18474	7918	7935	12947	12947					0.06309695694108086
EKLQMLQKL	9	Unmodified	_EKLQMLQKL_					0	0	0			REV__ENSG00000023892|ENST00000316637|DEF6	REV__ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.8348999023438	2	565.833734	1129.65292	-1.1796	-0.00066747	4.3485	0.0024605	3.1689	0.0017931	565.8360950834963	21.574	0.91414	21.646	21.352	22.266	0.071487					44	18	4	0	0	0	0.91321	1	638	638		31.53	1.2121	1	486420	+		11503	20015	7919	7936	12948	12948					0.09327504702150691
EKLRAGPQ	8	Unmodified	_EKLRAGPQ_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.2849426269531	2	449.758884	897.503215	-0.65361	-0.00029397	1.4247	0.00064079	0.77113	0.00034682	449.7590813675025	34.505	0.79585	34.329	33.896	34.692	-0.17557					40	19	3	0	0	0	0.027866	1	2561	2561		53.351	0	1	1012100			11504	18238	7920	7937	12949	12949					0.05036320474562217
EKLREMDKLYF	11	Unmodified	_EKLREMDKLYF_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7693176269531	3	491.258638	1470.75409	-0.4308	-0.00021163	2.5785	0.0012667	2.1477	0.0010551	491.25978524829054	43.009	0.83405	42.783	42.336	43.17	-0.22597					42	21	3	0	0	0	0.02477	1	3839	3839		22.562	0	1	649290	+		11505	20535	7921	7938	12950	12950					0.03753911614194294
EKLRETTI	8	Unmodified	_EKLRETTI_					0	0	0		ENSG00000065183|ENST00000349139|WDR3;nc|ENSG00000011347|O43581|SYT7;nc|ENSG00000011347|O43581-6|SYT7;nc|ENSG00000011347|O43581-2|SYT7;ENST00000539246.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-5|SYT7;ENST00000539468.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7	ENSG00000065183|ENST00000349139|WDR3;nc|ENSG00000011347|O43581|SYT7	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2834777832031	2	495.284931	988.55531	-1.0204	-0.00050538	-0.83557	-0.00041384	-1.8559	-0.00091922	495.2842871052104	69.245	0.91785	68.983	68.666	69.584	-0.26166					44	21	3	0	0	0	0.96769	1	8020	8020		42.396	0	1	2031100			11506	1295;894	7922	7939	12951	12951					0.060574390976512404
EKLRNNED	8	Unmodified	_EKLRNNED_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.28778076171875	2	509.25162	1016.48869	-0.1093	-5.5659E-05	-3.944	-0.0020085	-4.0533	-0.0020642	509.24941997868774	61.464	0.7176	61.535	61.203	61.92	0.071129					39	18	3	0	0	0	0.027866	1	7084	7084		19.997	9.1312	1	873140	+		11507	23832;36707	7923	7940	12952	12952					-0.018897964642519582
EKLSFKPLL	9	Unmodified	_EKLSFKPLL_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2970581054688	2	537.831517	1073.64848	0.55745	0.00029982	-1.3227	-0.00071141	-0.76528	-0.00041159	537.8309842111892	59.326	0.67519	59.326	59.07	59.745	0					29	17	2	0	0	0	0.024344	1	6813	6813		64.207	0	1	365370	+		11508	24776	7924	7941	12953	12953					0.11460363550895636
EKLSFKPLL	9	Unmodified	_EKLSFKPLL_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2974243164062	2	537.831517	1073.64848	0.33531	0.00018034	-1.002	-0.0005389	-0.66667	-0.00035856	537.8309910478074	59.55	0.59052	59.35	59.063	59.654	-0.20016					27	15	2	0	0	0	0.024292	1	6803	6803		68.787	38.469	1	345820	+		11509	24776	7924	7941	12954	12954					0.11460363550895636
EKLSFKPLL	9	Unmodified	_EKLSFKPLL_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2975463867188	2	537.831517	1073.64848	-0.40857	-0.00021974	-0.62674	-0.00033708	-1.0353	-0.00055682	537.8313447536391	59.22	0.70163	59.305	59.026	59.728	0.085686					36	18	3	0	0	0	0.023655	1	6705	6705		79.713	17.605	1	316630	+		11510	24776	7924	7941	12955	12955					0.11460363550895636
EKLSKPELL	9	Unmodified	_EKLSKPELL_					0	0	0		ENSG00000143079|ENST00000271277|CTTNBP2NL;ENST00000502356.3_1_1:112958760-112958892:+|nuORF	ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3222045898438	2	528.818607	1055.62266	-0.23621	-0.00012491	2.0599	0.0010893	1.8237	0.0009644	528.8191246765933	70.082	1.421	70.095	69.349	70.77	0.012421					99	36	4	0	0	0	0.6504	1	8411	8411		49.442	3.4896	1	12808000			11511	5606	7925	7942	12956	12956					0.09707469308614236
EKLTFSLRL	9	Unmodified	_EKLTFSLRL_					0	0	0		nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	nc|ENSG00000188372|P21754-2|ZP3	nc|ENSG00000188372|P21754-2|ZP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8301391601562	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	0.96906	1	11078	11078		26.693	2.4902	1	4967900			11512	9715	7926	7943	12957	12957					0.10094577919812764
EKLVAIFPVF	10	Unmodified	_EKLVAIFPVF_					0	0	0			REV__ENSG00000135537|ENST00000368977|AFG1L	REV__ENSG00000135537|ENST00000368977|AFG1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.82373046875	2	581.847167	1161.67978	-0.15955	-9.2832E-05	-2.4489	-0.0014249	-2.6085	-0.0015177	581.8455865504515	78.49	0.37065	78.297	78.135	78.506	-0.1921					11	8	2	0	0	0	0.03519	1	9708	9708		44.117	24.12	1	48868	+		11513	23555	7927	7944	12958	12958					0.1054093658497095
EKLVQQIPVL	10	Unmodified	_EKLVQQIPVL_					0	0	0			REV__ENSG00000155304|ENST00000285667|HSPA13	REV__ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.8585205078125	2	583.860806	1165.70706	-0.41859	-0.0002444	-2.9873	-0.0017442	-3.4059	-0.0019886	583.8588726706961	96.987	1.2388	96.995	96.575	97.813	0.0089111					82	27	5	0	0	0	1.0816	1	12372	12372		35.152	4.8343	1	1557300	+		11514	25000	7928	7945	12959	12959					0.1308342012534922
EKLYKCKA	8	Unmodified	_EKLYKCKA_					0	0	0		ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.263671875	2	491.773145	981.531738	-0.92823	-0.00045648	0.10684	5.2539E-05	-0.8214	-0.00040394	491.77338332313485	40.236	0.48253	40.086	39.707	40.189	-0.1497					16	12	2	0	0	0	0.027866	1	3434	3434		37.159	0	1	139100			11515	16326	7929	7946	12960	12960					0.04023302059488287
EKMEQQFAR	9	Unmodified	_EKMEQQFAR_					0	0	0			REV__ENSG00000242732|ENST00000609883|RTL5	REV__ENSG00000242732|ENST00000609883|RTL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	583.7522583007812	2	583.784773	1165.55499	-0.57454	-0.00033541	-3.2212	-0.0018805	-3.7957	-0.0022159	583.7828916853443	74.611	0.7149	74.353	74.028	74.743	-0.25887					22	16	2	0	0	0	0.024344	1	9096	9096		45.972	1.5951	1	91703	+		11516	28981	7930	7947	12961	12961					-0.02116303893831173
EKMGKKILL	9	Unmodified	_EKMGKKILL_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8084716796875	2	530.33337	1058.65219	-0.36918	-0.00019579	-3.1663	-0.0016792	-3.5355	-0.001875	530.3318746792638	73.303	0.19057	73.113	73.047	73.237	-0.19027					7	4	2	0	0	0	0.024405	1	8626	8626		35.618	12.576	1	141540	+		11517	21256	7931	7948	12962	12962					0.12520710053127004
EKMKEDRFK	9	Unmodified	_EKMKEDRFK_					0	0	0			REV__ENSG00000165972|ENST00000344280|CCDC38	REV__ENSG00000165972|ENST00000344280|CCDC38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.9066162109375	3	404.213141	1209.61759	1.3054	0.00052766	3.3015	0.0013345	4.6069	0.0018622	404.21465326843355	22.77	0.50534	22.844	22.607	23.112	0.073954					13	10	2	0	0	0	0.024359	1	781	781		32.751	0	1	30460	+		11518	25952	7932	7949	12963	12963					0.021168421743368526
EKMTLIPM	8	Unmodified	_EKMTLIPM_					0	0	0		nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2829284667969	2	481.756107	961.49766	1.2606	0.00060733	-1.5163	-0.0007305	-0.25568	-0.00012317	481.75551964045985	51.34	0.64391	51.228	50.973	51.617	-0.11163					27	16	2	0	0	0	0.027866	1	5318	5318		71.296	2.5089	1	328440			11519	5664	7933	7950	12964	12964					0.015371375762356365
EKMTLIPM	8	Unmodified	_EKMTLIPM_					0	0	0		nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.756107	961.49766	-1.006	-0.00048466	1.2601	0.00060705	0.25405	0.00012239	481.7565969619416	51.625	0.46229	51.352	51.081	51.543	-0.27351	0.061954	0.00064038	NaN	71.296	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341830			11520	5664	7933	7950							0.015371375762356365
EKNEKSEKA	9	Unmodified	_EKNEKSEKA_					0	0	0			REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7684936523438	2	531.774928	1061.5353	-0.95534	-0.00050803	1.1749	0.00062477	0.21953	0.00011674	531.7754064372972	22.975	0.40812	22.975	22.757	23.165	0					14	8	2	0	0	0	0.024447	1	866	866		25.574	0	1	60118	+		11521	37760	7934	7951	12965	12965					0.006996433670565239
EKNFKTVI	8	Unmodified	_EKNFKTVI_					0	0	0			REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6	REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.26861572265625	2	489.784567	977.554582	-0.24909	-0.000122	-0.48262	-0.00023638	-0.73171	-0.00035838	489.7842578911233	41.707	0.92403	41.479	41.197	42.121	-0.2278					63	24	4	0	0	0	0.027866	1	3689	3689		51.335	0	1	1534200	+		11522	26368	7935	7952	12966	12966					0.06490644448604144
EKNGDIGQQI	10	Unmodified	_EKNGDIGQQI_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2803955078125	2	551.280377	1100.5462	-1.542	-0.00085009	1.2076	0.00066575	-0.33438	-0.00018434	551.2809648310783	36.011	0.72887	35.968	35.688	36.417	-0.042454					48	20	4	0	0	0	0.31896	1	2812	2812		107.01	19.311	1	3245600			11523	4583	7936	7953	12967	12967					-4.9542586793904775E-05
EKNLVIAHE	9	Unmodified	_EKNLVIAHE_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3551635742188	2	526.790381	1051.56621	0.21131	0.00011131	-0.20023	-0.00010548	0.011074	5.8334E-06	526.7902261960356	50.412	0.49616	50.493	50.18	50.676	0.08099					20	14	2	0	0	0	0.024466	1	5172	5172		47.657	13.485	1	308190			11524	2241	7937	7954	12968	12968					0.04248841471940068
EKNLVIAHE	9	Unmodified	_EKNLVIAHE_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3552856445312	2	526.790381	1051.56621	0.075135	3.958E-05	2.798	0.001474	2.8731	0.0015135	527.2933717385157	49.988	0.35695	50.069	49.919	50.276	0.08099					13	10	2	0	0	0	0.024527	1	5162	5162		31.53	21.824	1	181980			11525	2241	7937	7954	12969	12969					0.04248841471940068
EKNMAILD	8	Unmodified	_EKNMAILD_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7494812011719	2	467.239135	932.463718	0.64621	0.00030193	-3.9335	-0.0018379	-3.2873	-0.001536	467.2372342883582	69.414	0.80394	69.121	68.789	69.593	-0.29291					36	20	3	0	0	0	0.027866	1	8373	8373		21.96	0	1	571730			11526	1231	7938	7955	12970	12970					-0.005215675911699691
EKPDIGDPNWI	11	Unmodified	_EKPDIGDPNWI_					0	0	0			REV__ENSG00000182890|ENST00000328078|GLUD2	REV__ENSG00000182890|ENST00000328078|GLUD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7579345703125	3	428.547065	1282.61937	-0.050435	-2.1614E-05	1.0122	0.00043377	0.96176	0.00041216	428.8821998251991	41.572	0.19769	41.342	41.196	41.394	-0.23029					6	4	2	0	0	0	0.024734	1	3663	3663		36.528	17.265	1	58647	+		11527	27516	7939	7956	12971	12971					-0.010638255360618132
EKPDPAKTK	9	Unmodified	_EKPDPAKTK_					0	0	0		TOP2A|p.Q1453E|1|0.37|ENSG00000131747|chr17:40390075-40390075|G/C|missense_variant	TOP2A|p.Q1453E|1|0.37|ENSG00000131747|chr17:40390075-40390075|G/C|missense_variant	TOP2A|p.Q1453E|1|0.37|ENSG00000131747|chr17:40390075-40390075|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.33148193359375	2	507.284931	1012.55531	-0.2263	-0.0001148	-0.39248	-0.0001991	-0.61878	-0.0003139	507.28448206259014	37.324	0.46987	37.261	37.052	37.522	-0.063385					33	12	3	0	0	0	0.024257	1	3049	3049		58.23	4.8785	1	810120			11528	38099	7940	7957	12972	12972					0.04953439097664614
EKPEREKTP	9	Unmodified	_EKPEREKTP_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.32421875	2	557.29857	1112.58259	-0.075561	-4.211E-05	4.4712	0.0024918	4.3956	0.0024497	557.8037916518717	75.908	0.14962	75.733	75.659	75.809	-0.17548					5	3	2	0	0	0	0.024477	1	8976	8976		27.882	0	1	22644			11529	1051	7941	7958	12973	12973					0.030799226380622713
EKPFVFLQG	9	Unmodified	_EKPFVFLQG_					0	0	0		NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant	NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant	NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.3089599609375	2	532.792392	1063.57023	-0.50225	-0.0002676	-4.4858	-0.00239	-4.988	-0.0026576	532.7898387002366	67.442	0.83929	67.153	66.832	67.671	-0.28834					23	14	2	0	0	0	0.024495	1	7989	7989		34.173	5.0025	1	455820			11530	18885	7942	7959	12974	12974					0.04098930965665204
EKPHSLSGDAI	11	Unmodified	_EKPHSLSGDAI_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7705688476562	2	577.296027	1152.5775	-2.5284	-0.0014596	-2.0989	-0.0012117	-4.6273	-0.0026713	577.2928750699963	52.218	0.22119	51.949	51.76	51.981	-0.26903					6	5	2	0	0	0	0.024731	1	5391	5391		37.508	3.5865	1	66414	+		11531	36816	7943	7960	12975	12975					0.007316187754213388
EKPRLSPEP	9	Unmodified	_EKPRLSPEP_					0	0	0		nc|ENSG00000108813|Q92988-3|DLX4;nc|ENSG00000108813|Q92988-2|DLX4;ENSG00000108813|ENST00000240306|DLX4	nc|ENSG00000108813|Q92988-3|DLX4	nc|ENSG00000108813|Q92988-3|DLX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7700805664062	2	526.790381	1051.56621	0.12422	6.5439E-05	-0.71248	-0.00037533	-0.58826	-0.00030989	526.7900861609015	48.255	0.54381	48.068	47.825	48.368	-0.18684					22	14	2	0	0	0	0.024495	1	4731	4731		14.137	0	1	580710			11532	2933	7944	7961	12976	12976					0.04248841471940068
EKPRRRERI	9	Unmodified	_EKPRRRERI_					0	0	0			REV__ENSG00000077157|ENST00000608999|PPP1R12B	REV__ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	619.8117065429688	2	620.373269	1238.73199	-0.8601	-0.00053358	0.88376	0.00054826	0.023663	1.468E-05	620.3737029546196	46.196	0.1826	46.044	45.954	46.136	-0.15156					7	4	2	0	0	0	0.024397	1	4517	4517		56.721	1.9447	1	59536	+		11533	20582	7945	7962	12977	12977					0.1221691277132777
EKQCRLFDA	9	Unmodified	_EKQCRLFDA_					0	0	0			REV__nc|ENSG00000141425|Q96P16-3|RPRD1A	REV__nc|ENSG00000141425|Q96P16-3|RPRD1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.8057861328125	2	555.274041	1108.53353	-0.9403	-0.00052212	-2.1299	-0.0011827	-3.0702	-0.0017048	555.2723894069254	33.37	0.64046	33.204	32.8	33.44	-0.16565					22	15	2	0	0	0	0.024527	1	2323	2323		39.253	18.306	1	87754	+		11534	24082	7946	7963	12978	12978					-0.016396889225461564
EKQEEKQF	8	Unmodified	_EKQEEKQF_					0	0	0		nc|ENSG00000196220|O43295-2|SRGAP3;IRAK2-SRGAP3|2|fusion;ENSG00000196220|ENST00000383836|SRGAP3;IRAK2-SRGAP3|1|fusion;ENST00000470951.5_1_3:9101821-9290635:-|nuORF;ENST00000485983.6_1_3:9079745-9122942:-|nuORF;nc|ENSG00000196220|O43295-3|SRGAP3	nc|ENSG00000196220|O43295-2|SRGAP3	nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.3004150390625	2	533.264196	1064.51384	-0.39481	-0.00021054	1.543	0.00082285	1.1482	0.00061231	533.7670527009121	36.523	0.79879	36.307	36.05	36.849	-0.21661					40	19	3	0	0	0	0.027866	1	2892	2892		35.618	0	1	262380			11535	9838	7947	7964	12979	12979					-0.015837416616705013
EKQEEKQF	8	Unmodified	_EKQEEKQF_					0	0	0		nc|ENSG00000196220|O43295-2|SRGAP3;IRAK2-SRGAP3|2|fusion;ENSG00000196220|ENST00000383836|SRGAP3;IRAK2-SRGAP3|1|fusion;ENST00000470951.5_1_3:9101821-9290635:-|nuORF;ENST00000485983.6_1_3:9079745-9122942:-|nuORF;nc|ENSG00000196220|O43295-3|SRGAP3	nc|ENSG00000196220|O43295-2|SRGAP3	nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.264196	1064.51384	1.2709	0.00067774	-0.2219	-0.00011833	1.049	0.0005594	533.7660300909984	36.44	0.63681	36.242	35.979	36.616	-0.19829	-0.032334	-0.00088432	NaN	44.117	41	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292120			11536	9838	7947	7964							-0.015837416616705013
EKQEELDPES	10	Unmodified	_EKQEELDPES_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.5511779785156	3	401.850702	1202.53028	0.90934	0.00036542	1.6774	0.00067408	2.5868	0.0010395	401.8512901602418	23.332	0.87371	23.13	22.873	23.747	-0.20193					39	19	3	0	0	0	0.03519	1	912	912		25.126	10.347	1	377480			11537	10117	7948	7965	12980	12980					-0.06288705286237928
EKQEELDPES	10	Unmodified	_EKQEELDPES_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5511474609375	3	401.850702	1202.53028	1.3909	0.00055894	1.1062	0.00044454	2.4972	0.0010035	401.8510899621314	23.337	0.85144	23.146	22.942	23.794	-0.19117					32	19	2	0	0	0	0.03519	1	885	885		56.632	43.396	1	681810			11538	10117	7948	7965	12981	12981					-0.06288705286237928
EKQIQEVQEV	10	Unmodified	_EKQIQEVQEV_					0	0	0			REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.5354919433594	3	410.550587	1228.62993	-0.027294	-1.1205E-05	-1.8265	-0.00074988	-1.8538	-0.00076109	410.549702967579	47.488	0.77265	47.392	46.971	47.743	-0.096649					52	20	4	0	0	0	0.03519	1	4598	4598		44.639	7.0395	1	2029600	+		11539	27705	7949	7966	12982	12982					0.024761571183717024
EKQIRKASTS	10	Unmodified	_EKQIRKASTS_					0	0	0			REV__ENSG00000170142|ENST00000306627|UBE2E1	REV__ENSG00000170142|ENST00000306627|UBE2E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.291748046875	2	574.325119	1146.63569	-0.025382	-1.4578E-05	3.8416	0.0022063	3.8162	0.0021918	574.3275194647138	82.386	0.56423	82.205	81.941	82.505	-0.18079					18	12	2	0	0	0	0.03519	1	9895	9895		39.253	0	1	100120	+		11540	26429	7950	7967	12983	12983					0.06823300420705891
EKQMEKAH	8	Unmodified	_EKQMEKAH_					0	0	0		nc|ENSG00000177548|Q9H5N1-2|RABEP2;ENSG00000177548|ENST00000358201|RABEP2;ENST00000562590.5_1_16:28922190-28936514:-|nuORF	nc|ENSG00000177548|Q9H5N1-2|RABEP2	nc|ENSG00000177548|Q9H5N1-2|RABEP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3082580566406	2	500.747659	999.480765	-1.7007	-0.00085163	-1.5463	-0.00077431	-3.247	-0.0016259	500.7466967301323	21.356	0.58362	21.143	21.02	21.604	-0.2128					15	11	2	0	0	0	0.027866	1	647	647		37.159	5.6293	1	42992			11541	8751	7951	7968	12984	12984					-0.01899646985361869
EKQMKQEIN	9	Unmodified	_EKQMKQEIN_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.2923583984375	2	574.29243	1146.57031	-0.45131	-0.00025918	0.40886	0.00023481	-0.042449	-2.4378E-05	574.2925346994479	26.046	0.71145	26.023	25.693	26.405	-0.023088					47	16	4	0	0	0	0.016758	1	1289	1289		153.04	16.768	1	996250			11542	1373	7952	7969	12985	12985					0.002885629033698933
EKQPKVLL	8	Unmodified	_EKQPKVLL_					0	0	0			REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.8028869628906	2	477.80276	953.590967	0.22571	0.00010784	0.28055	0.00013405	0.50625	0.00024189	477.80244322282726	33.653	0.87655	33.422	33.114	33.99	-0.23107					58	21	5	0	0	0	0.78609	1	2410	2410		60.294	4.7898	1	2239800	+		11543	19700	7953	7970	12986	12986					0.11231521345325746
EKQRYQDL	8	Unmodified	_EKQRYQDL_					0	0	0			REV__IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	REV__IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7633666992188	2	540.277638	1078.54072	-0.94935	-0.00051291	-0.59619	-0.00032211	-1.5455	-0.00083502	540.7778018873971	33.636	0.62338	33.636	33.388	34.011	0					61	16	5	0	0	0	0.027866	1	2497	2497		25.45	0	1	366040	+		11544	23387	7954	7971	12987	12987					0.004593669495079666
EKQVGKPL	8	Unmodified	_EKQVGKPL_					0	0	0			REV__nc|ENSG00000010539|P98182-3|ZNF200	REV__nc|ENSG00000010539|P98182-3|ZNF200	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.7718811035156	2	449.77146	897.528367	0.26621	0.00011974	-0.14751	-6.6345E-05	0.11871	5.3391E-05	449.77126531580916	19.925	1.2644	19.762	19.428	20.693	-0.16286					45	25	2	0	0	0	1.0338	1	480	480		31.955	0.42505	1	347890	+		11545	19907	7955	7972	12988	12988					0.07550375277151034
EKQWYWWFWES	11	Unmodified	_EKQWYWWFWES_					0	0	0			REV__ENSG00000001036|ENST00000002165|FUCA2	REV__ENSG00000001036|ENST00000002165|FUCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7796020507812	3	558.917381	1673.73031	-0.77659	-0.00043405	-0.36672	-0.00020497	-1.1433	-0.00063902	558.9171725300082	60.422	0.4452	60.246	59.998	60.443	-0.1761					22	10	3	0	0	0	0.024902	1	6698	6698		0.3405	0	1	180740	+		11546	19755	7956	7973	12989	12989					-0.07960185827982968
EKQWYWWFWES	11	Unmodified	_EKQWYWWFWES_					0	0	0			REV__ENSG00000001036|ENST00000002165|FUCA2	REV__ENSG00000001036|ENST00000002165|FUCA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	558.917381	1673.73031	-0.41493	-0.00023191	-0.86979	-0.00048614	-1.2847	-0.00071805	558.9170236652227	60.592	0.4454	60.386	60.213	60.658	-0.20599	0.034625	-0.00034261	NaN	0.3405	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183200	+		11547	19755	7956	7973							-0.07960185827982968
EKQWYWWFWES	11	Unmodified	_EKQWYWWFWES_					0	0	0			REV__ENSG00000001036|ENST00000002165|FUCA2	REV__ENSG00000001036|ENST00000002165|FUCA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	558.917381	1673.73031	-0.85315	-0.00047684	-0.72189	-0.00040348	-1.575	-0.00088032	558.9170961680586	60.675	0.41101	60.421	60.212	60.623	-0.25373	0.070144	-9.4619E-05	NaN	0.3405	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286710	+		11548	19755	7956	7973							-0.07960185827982968
EKRCRPGQ	8	Unmodified	_EKRCRPGQ_					0	0	0			REV__ENST00000511959.1_1_4:5437650-5448758:+|nuORF	REV__ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2498474121094	2	487.253443	972.492332	-0.30488	-0.00014855	1.5517	0.00075605	1.2468	0.0006075	487.2541637949244	33.75	0.50123	33.55	33.365	33.866	-0.20019					18	12	2	0	0	0	0.027866	1	2404	2404		29.15	0	1	217480	+		11549	34129	7957	7974	12990	12990					0.00498594828638943
EKRDKLEP	8	Unmodified	_EKRDKLEP_					0	0	0			REV__ENSG00000168779|ENST00000483851|SHOX2	REV__ENSG00000168779|ENST00000483851|SHOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3030700683594	2	507.782556	1013.55056	-0.25157	-0.00012774	-0.21788	-0.00011064	-0.46945	-0.00023838	507.7822694998575	47.107	1.1857	47.107	46.343	47.529	0					46	32	2	0	0	0	0.027866	1	4667	4667		47.916	18.766	1	566240	+		11550	26291	7958	7975	12991	12991					0.044325549548943854
EKRGILDW	8	Unmodified	_EKRGILDW_					0	0	0			REV__ENSG00000179051|ENST00000375436|RCC2	REV__ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.78216552734375	2	508.779816	1015.54508	-0.3244	-0.00016505	-0.28957	-0.00014733	-0.61397	-0.00031237	508.77962946954796	42.211	0.3396	41.981	41.761	42.101	-0.23029					13	9	2	0	0	0	0.027866	1	3737	3737		45.972	0	1	375060			11551	27230	7959	7976	12992	12992					0.03792876163083747
EKRGLNII	8	Unmodified	_EKRGLNII_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1;nc|ENSG00000134668|Q6ZMY3-4|SPOCD1;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2944641113281	2	471.790184	941.565815	0.22243	0.00010494	-1.6448	-0.00077599	-1.4224	-0.00067105	471.7893143735601	31.838	0.67488	31.601	31.411	32.086	-0.23667					19	15	2	0	0	0	0.027866	1	2214	2214		55.504	19.886	1	127050			11552	4816;37964	7960	7977	12993	12993					0.0926946654275298
EKRISEKP	8	Unmodified	_EKRISEKP_					0	0	0			REV__ENSG00000025800|ENST00000373625|KPNA6;REV__ENSG00000196911|ENST00000368564|KPNA5	REV__ENSG00000196911|ENST00000368564|KPNA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7742919921875	2	493.785099	985.555644	0.71111	0.00035114	2.3112	0.0011412	3.0223	0.0014924	493.78439808734896	49.424	0.47212	49.424	49.072	49.544	0					20	12	2	0	0	0	0.027866	1	5123	5123		49.442	0	1	429890	+		11553	20025;28235	7961	7978	12994	12994					0.06228858817530636
EKRKDQMRKK	10	Unmodified	_EKRKDQMRKK_					0	0	0		ENST00000395812.6_1_5:95998196-96058385:+|nuORF;ENST00000338252.7_2_5:95997846-96058385:+|nuORF	ENST00000395812.6_1_5:95998196-96058385:+|nuORF	ENST00000395812.6_1_5:95998196-96058385:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.7720031738281	3	449.594355	1345.76124	0.94622	0.00042542	-1.8038	-0.000811	-0.85763	-0.00038558	449.59257945950253	19.799	0.49541	19.599	19.305	19.801	-0.2001					33	9	4	0	0	0	0.03519	1	481	481		19.263	4.569	1	81391			11554	12437	7962	7979	12995	12995					0.10218689005273518
EKRKKKEV	8	Unmodified	_EKRKKKEV_					0	0	0			REV__ENST00000373358.7_2_X:75397480-75397852:+|nuORF	REV__ENST00000373358.7_2_X:75397480-75397852:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7586059570312	2	522.82984	1043.64513	-0.20577	-0.00010758	-0.74239	-0.00038814	-0.94816	-0.00049572	522.8293638721782	41.694	0.57043	41.463	41.08	41.651	-0.23029					20	14	2	0	0	0	0.027866	1	3666	3666		40.778	18.818	1	161170	+		11555	31253	7963	7980	12996	12996					0.1250511349687713
EKRKQEEEA	9	Unmodified	_EKRKQEEEA_					0	0	0		ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.7909545898438	2	573.791109	1145.56767	-0.37932	-0.00021765	0.0055684	3.1951E-06	-0.37375	-0.00021445	573.7911426527779	21.219	0.77684	21.128	20.814	21.591	-0.090094					50	15	5	0	0	0	0.48817	1	639	639		60.118	8.9256	1	1400900			11556	7708	7964	7981	12997	12997					0.0007043077005164378
EKRKTCHY	8	Unmodified	_EKRKTCHY_					0	0	0			REV__nc|ENSG00000089225|Q99593-3|TBX5	REV__nc|ENSG00000089225|Q99593-3|TBX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2931518554688	2	532.768926	1063.5233	-0.64122	-0.00034162	-1.2343	-0.0006576	-1.8755	-0.00099922	532.7680116540545	25.091	0.56663	24.864	24.538	25.105	-0.22683					21	12	2	0	0	0	0.027866	1	1136	1136		26.693	5.746	1	65610	+		11557	20849	7965	7982	12998	12998					-0.005922518571196633
EKRRDKVN	8	Unmodified	_EKRRDKVN_					0	0	0		nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3255615234375	2	522.799072	1043.58359	-0.54236	-0.00028355	2.8154	0.0014719	2.273	0.0011883	522.8005188469764	81.821	0.4456	81.847	81.536	81.982	0.025711					15	10	2	0	0	0	0.027866	1	10136	10136		20.947	0	1	99508			11558	7501	7966	7983	12999	12999					0.06354181797610181
EKRRMRLV	8	Unmodified	_EKRRMRLV_					0	0	0		ENSG00000173137|ENST00000308860|ADCK5	ENSG00000173137|ENST00000308860|ADCK5	ENSG00000173137|ENST00000308860|ADCK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7824096679688	2	544.329485	1086.64442	-1.4033	-0.00076388	-3.3468	-0.0018218	-4.7501	-0.0025856	544.3276429356116	38.309	0.73437	38.226	37.984	38.718	-0.082512					54	18	4	0	0	0	0.027866	1	3229	3229		31.955	0	1	1831900			11559	8342	7967	7984	13000	13000					0.10455995576194255
EKRSFTILL	9	Unmodified	_EKRSFTILL_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8306884765625	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	0.96322	1	11332	11332		27.882	2.3082	1	4870500			11560	4823	7968	7985	13001	13001					0.10094577919835501
EKRVAGLPGKR	11	Unmodified	_EKRVAGLPGKR_					0	0	0			REV__nc|ENSG00000008128|Q9UQ88-8|CDK11A	REV__nc|ENSG00000008128|Q9UQ88-8|CDK11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.8717651367188	2	605.872571	1209.73059	-0.60046	-0.0003638	-0.31946	-0.00019355	-0.91992	-0.00055735	605.8721410970385	98.62	1.0824	98.616	98.307	99.389	-0.0038834					72	24	4	0	0	0	1.0344	1	12528	12528		29.17	2.4771	1	1075200	+		11561	36431	7969	7986	13002	13002					0.13411278682542616
EKRVAGLPGKR	11	Unmodified	_EKRVAGLPGKR_					0	0	0			REV__nc|ENSG00000008128|Q9UQ88-8|CDK11A	REV__nc|ENSG00000008128|Q9UQ88-8|CDK11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8720703125	2	605.872571	1209.73059	0.020307	1.2303E-05	-0.796	-0.00048227	-0.77569	-0.00046997	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	0.99553	1	12201	12201		37.812	4.9991	1	1147100	+		11562	36431	7969	7986	13003	13003					0.13411278682542616
EKRWQKRG	8	Unmodified	_EKRWQKRG_					0	0	0			REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7824096679688	2	544.309606	1086.60466	-1.2854	-0.00069964	-0.49446	-0.00026914	-1.7798	-0.00096878	544.3093666426404	38.601	0.32444	38.601	38.473	38.797	0					13	7	2	0	0	0	0.027866	1	3233	3233		47.916	0	1	185650	+		11563	35898	7970	7987	13004	13004					0.06482191897134726
EKRWQKRG	8	Unmodified	_EKRWQKRG_					0	0	0			REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	REV__ENST00000603791.1_1_6:3751774-3752740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7824096679688	2	544.309606	1086.60466	-1.15	-0.00062597	-0.24445	-0.00013306	-1.3945	-0.00075903	544.309120045803	38.583	0.42413	38.5	38.294	38.718	-0.082512					22	10	3	0	0	0	0.027866	1	3229	3229		55.504	11.387	1	238780	+		11564	35898	7970	7987	13005	13005					0.06482191897134726
EKRYFVDV	8	Unmodified	_EKRYFVDV_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7805786132812	2	528.279649	1054.54475	-0.29656	-0.00015667	3.7052	0.0019574	3.4086	0.0018007	528.2808277493735	82.042	0.87688	82.068	81.739	82.616	0.025711					64	20	6	0	0	0	0.027866	1	10146	10146		65.803	12.452	1	1620200			11565	9497	7971	7988	13006	13006					0.0196545644323578
EKSATAGAR	9	Unmodified	_EKSATAGAR_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.26861572265625	2	445.738148	889.461744	0.16695	7.4415E-05	-3.6752	-0.0016382	-3.5083	-0.0015638	445.736192587207	63.294	0.75211	63.042	62.766	63.518	-0.25141					28	19	2	0	0	0	0.024427	1	7346	7346		26.693	1.2427	1	68069	+		11566	27060	7972	7989	13007	13007					0.01259139715227775
EKSATAGAR	9	Unmodified	_EKSATAGAR_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	445.738148	889.461744	-0.049656	-2.2133E-05	-4.0015	-0.0017836	-4.0512	-0.0018058	445.7363138853044	63.526	0.6886	63.299	62.974	63.662	-0.22773	0.15716	3.5469E-05	NaN	26.693	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105820	+		11567	27060	7972	7989							0.01259139715227775
EKSATAGAR	9	Unmodified	_EKSATAGAR_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	445.738148	889.461744	-0.12834	-5.7205E-05	-3.3924	-0.0015121	-3.5208	-0.0015693	445.73643668443816	63.437	1.2879	63.245	62.906	64.194	-0.19243	0.10361	0.00057848	NaN	26.693	56	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160450	+		11568	27060	7972	7989							0.01259139715227775
EKSATAGAR	9	Unmodified	_EKSATAGAR_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	445.738148	889.461744	0.39069	0.00017415	-3.9258	-0.0017499	-3.5351	-0.0015757	445.736094990087	63.453	1.2633	63.194	63.041	64.304	-0.25824	0.052919	0.00010302	NaN	26.693	54	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115250	+		11569	27060	7972	7989							0.01259139715227775
EKSMPIRTP	9	Unmodified	_EKSMPIRTP_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7858276367188	2	529.786784	1057.55902	-0.96841	-0.00051305	1.4609	0.00077397	0.49251	0.00026092	529.7875447082939	53.216	0.4392	53.069	52.835	53.275	-0.14723					19	11	2	0	0	0	0.0242	1	5693	5693		69.628	0	1	247630	+		11570	36602	7973	7990	13008	13008					0.03253785599895309
EKSPPAMPPKG	11	Unmodified	_EKSPPAMPPKG_					0	0	0			REV__ENST00000497545.5_1_1:110029045-110031729:+|nuORF	REV__ENST00000497545.5_1_1:110029045-110031729:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.789794921875	2	569.799891	1137.58523	-0.84319	-0.00048045	-2.7993	-0.0015951	-3.6425	-0.0020755	569.7986842536371	78.715	0.95289	78.733	78.157	79.11	0.018669					35	22	2	0	0	0	0.024756	1	9594	9594		29.17	0	1	184300	+		11571	25471	7974	7991	13009	13009					0.021940547713484193
EKSRPRAGL	9	Unmodified	_EKSRPRAGL_					0	0	0		nc|ENSG00000213471|A6NNM8|TTLL13;ENSG00000213471|ENST00000641754|TTLL13	nc|ENSG00000213471|A6NNM8|TTLL13	nc|ENSG00000213471|A6NNM8|TTLL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2955017089844	2	507.296165	1012.57778	3.0875	0.0015663	-3.2849	-0.0016664	-0.1974	-0.00010014	507.29439199215295	17.959	0.58761	17.959	17.697	18.284	0					27	11	3	0	0	0	0.72875	1	229	229		44.117	3.3386	1	281450			11572	18711	7975	7992	13010	13010					0.07199083285945562
EKSSSFSL	8	Unmodified	_EKSSSFSL_					0	0	0		nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL;nc|ENSG00000102445|Q9H714-2|RUBCNL;nc|ENSG00000102445|Q9H714-1|RUBCNL	nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-1|RUBCNL	nc|ENSG00000102445|Q9H714-3|RUBCNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2357482910156	2	442.721633	883.428712	0.34594	0.00015315	-3.4541	-0.0015292	-3.1082	-0.0013761	442.717747740656	33.656	0.60059	33.712	33.21	33.81	0.056572					20	15	2	0	0	0	0.027866	1	2396	2396		47.916	14.4	1	44673			11573	2408;18135	7976	7993	13011	13011					-0.0176648712745191
EKSTFKSFN	9	Unmodified	_EKSTFKSFN_					0	0	0			REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.3216552734375	2	544.274564	1086.53457	-0.44064	-0.00023983	1.5179	0.00082616	1.0773	0.00058634	544.2754789124305	24.531	0.201	24.316	24.218	24.418	-0.2151					5	4	2	0	0	0	0.024495	1	1070	1070		42.396	8.8806	1	33191	+		11574	28286	7977	7994	13012	13012					-0.005231512819818818
EKSVDKKKF	9	Unmodified	_EKSVDKKKF_					0	0	0			REV__ENSG00000176692|ENST00000649859|FOXC2	REV__ENSG00000176692|ENST00000649859|FOXC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2769775390625	2	554.821681	1107.62881	-0.30162	-0.00016735	-1.6274	-0.00090293	-1.929	-0.0010703	555.3218326628759	41.371	0.34805	41.236	41.06	41.409	-0.13553					14	8	3	0	0	0	0.024457	1	3658	3658		29.15	8.2026	1	67476	+		11575	27039	7978	7995	13013	13013					0.07929987540137517
EKSVSGKQI	9	Unmodified	_EKSVSGKQI_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2536315917969	2	488.277106	974.53966	-0.29972	-0.00014635	3.7664	0.001839	3.4666	0.0016927	488.2779181330573	79.457	0.75139	79.457	78.993	79.744	0					35	17	3	0	0	0	0.024495	1	9886	9886		26.693	0	1	146040			11576	10570	7979	7996	13014	13014					0.051371525806303
EKSVYWDY	8	Unmodified	_EKSVYWDY_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1;nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.24609375	2	545.248015	1088.48148	-0.84784	-0.00046228	-3.226	-0.0017589	-4.0738	-0.0022212	545.2461334101208	40.325	0.88313	40.175	39.933	40.816	-0.1497					65	23	4	0	0	0	0.845	2	3476	3476;3485		55.504	13.108	1	5365900			11577	15010	7980	7997	13015;13016	13015					-0.05922529064673654
EKSVYWDY	8	Unmodified	_EKSVYWDY_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1;nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2459106445312	2	545.248015	1088.48148	-0.34373	-0.00018742	-3.9022	-0.0021276	-4.2459	-0.0023151	545.2457701859922	40.499	1.0425	40.274	40.004	41.047	-0.225					64	27	4	0	0	0	0.77775	1	3509	3509		60.972	13.012	1	4861900			11578	15010	7980	7997	13017	13017					-0.05922529064673654
EKSVYWDY	8	Unmodified	_EKSVYWDY_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1;nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2459106445312	2	545.248015	1088.48148	-1.7325	-0.00094464	-2.3071	-0.0012579	-4.0396	-0.0022026	545.2466568337019	40.521	0.91787	40.291	39.93	40.848	-0.2302					63	24	5	0	0	0	0.59392	2	3504	3480;3504		76.847	3.0877	1	4822400			11579	15010	7980	7997	13018;13019	13019					-0.05922529064673654
EKTFFTEAL	9	Unmodified	_EKTFFTEAL_					0	0	0			REV__ENST00000545177.4_1_6:2858169-2876589:-|nuORF	REV__ENST00000545177.4_1_6:2858169-2876589:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.8220825195312	2	543.279315	1084.54408	0.50958	0.00027684	-1.4295	-0.0007766	-0.91988	-0.00049975	543.2788310634484	68.066	0.52821	67.811	67.62	68.148	-0.25516					20	12	2	0	0	0	0.024477	1	7846	7846		35.618	0	1	205240	+		11580	34819	7981	7998	13020	13020					0.005186170035358373
EKTIPLAI	8	Unmodified	_EKTIPLAI_					0	0	0		SLC7A11|p.N261K|1|0.08|ENSG00000151012|chr4:138214593-138214593|G/C|missense_variant;ENSG00000151012|ENST00000280612|SLC7A11	SLC7A11|p.N261K|1|0.08|ENSG00000151012|chr4:138214593-138214593|G/C|missense_variant	SLC7A11|p.N261K|1|0.08|ENSG00000151012|chr4:138214593-138214593|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2591552734375	2	442.776211	883.537869	-0.21913	-9.7027E-05	3.8052	0.0016849	3.5861	0.0015878	442.77774107853764	27.601	0.10953	27.588	27.536	27.645	-0.012983					4	2	2	0	0	0	0.027866	1	1515	1515		44.531	7.372	1	20696			11581	6168	7982	7999	13021	13021					0.09144143562639329
EKTKKPRSA	9	Unmodified	_EKTKKPRSA_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.811767578125	2	522.811648	1043.60874	-0.37468	-0.00019589	-0.085256	-4.4573E-05	-0.45994	-0.00024046	522.8116264100595	95.269	1.298	95.132	94.638	95.936	-0.13689					80	29	4	0	0	0	0.96322	1	11741	11741		27.882	1.0861	1	739230			11582	3320	7983	8000	13022	13022					0.08868236600187629
EKTSLASIL	9	Unmodified	_EKTSLASIL_					0	0	0			REV__ENST00000209875.8_1_12:54632788-54632935:-|nuORF	REV__ENST00000209875.8_1_12:54632788-54632935:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2829284667969	2	481.281857	960.549162	0.69698	0.00033544	0.34776	0.00016737	1.0447	0.00050281	481.28186434173847	51.694	1.04	51.575	51.242	52.282	-0.11876					67	27	4	0	0	0	0.4752	1	5318	5318		60.972	2.19	1	3598200	+		11583	29303	7984	8001	13023	13023					0.06730920866129964
EKVFLETLS	9	Unmodified	_EKVFLETLS_					0	0	0			REV__ENST00000482311.1_1_3:3170856-3182346:+|nuORF	REV__ENST00000482311.1_1_3:3170856-3182346:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7684936523438	2	533.294965	1064.57538	-0.91698	-0.00048902	-3.0158	-0.0016083	-3.9328	-0.0020973	533.7944163498498	23.19	0.21169	23.19	23.033	23.245	0					5	4	2	0	0	0	0.024261	1	866	866		64.207	5.4253	1	36803	+		11584	20479	7985	8002	13024	13024					0.04567190037619184
EKVIKKACIIA	11	Unmodified	_EKVIKKACIIA_					0	0	0			REV__ENSG00000151033|ENST00000647634|LYZL2	REV__ENSG00000151033|ENST00000647634|LYZL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	607.7803955078125	2	608.378309	1214.74206	-1.3203	-0.00080321	-2.4561	-0.0014942	-3.7763	-0.0022974	608.3766703333949	56.037	0.25446	55.821	55.745	55.999	-0.21551					9	6	2	0	0	0	0.024747	1	6059	6059		24.519	5.9881	1	100890	+		11585	24746	7986	8003	13025	13025					0.14328339661665268
EKVKRRVL	8	Unmodified	_EKVKRRVL_					0	0	0		nc|ENSG00000188655|P60153|RNASE9;ENSG00000188655|ENST00000404716|RNASE9	nc|ENSG00000188655|P60153|RNASE9	nc|ENSG00000188655|P60153|RNASE9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7901611328125	2	514.340375	1026.6662	-0.018566	-9.5491E-06	-3.4021	-0.0017499	-3.4207	-0.0017594	514.3391492222348	61.395	0.19515	61.395	61.334	61.529	0					5	4	2	0	0	0	0.027866	1	7123	7123		25.45	0	1	50351			11586	9737	7987	8004	13026	13026					0.15393123596413716
EKVLDVIK	8	Unmodified	_EKVLDVIK_					0	0	0			REV__nc|ENSG00000197249|P01009-3|SERPINA1	REV__nc|ENSG00000197249|P01009-3|SERPINA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2852478027344	2	472.294768	942.574983	-0.25801	-0.00012186	0.61688	0.00029135	0.35887	0.00016949	472.2947991267253	83.194	0.50925	83.221	82.96	83.469	0.026558					15	11	2	0	0	0	0.027866	1	10348	10348		49.442	3.4693	1	88593	+		11587	28282	7988	8005	13027	13027					0.1013981510842541
EKVLKKVSK	9	Unmodified	_EKVLKKVSK_					0	0	0		nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7	nc|ENSG00000147533|Q7Z5G4-3|GOLGA7	nc|ENSG00000147533|Q7Z5G4-3|GOLGA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8079833984375	2	529.850242	1057.68593	-0.81544	-0.00043206	-2.6608	-0.0014098	-3.4763	-0.0018419	529.8497555361937	73.54	0.15482	73.275	73.139	73.294	-0.26479					5	3	2	0	0	0	0.024466	1	8640	8640		39.253	25.116	1	38119			11588	5974	7989	8006	13028	13028					0.15939454816498255
EKVLKSHG	8	Unmodified	_EKVLKSHG_					0	0	0		ENSG00000244067|ENST00000493422|GSTA2;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.27398681640625	2	449.261259	896.507966	-0.089725	-4.031E-05	0.59896	0.00026909	0.50923	0.00022878	449.2609709392577	56.793	0.16647	56.793	56.643	56.809	0					7	4	2	0	0	0	0.027866	1	6332	6332		79.451	0	1	174470			11589	10818	7990	8007	13029	13029					0.05557204617332445
EKVNKNRLSY	10	Unmodified	_EKVNKNRLSY_					0	0	0			REV__ENSG00000181371|ENST00000327216|OR5M8	REV__ENSG00000181371|ENST00000327216|OR5M8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.8742980957031	3	417.566571	1249.67788	-0.77957	-0.00032552	1.1302	0.00047193	0.35061	0.0001464	417.56733767215144	37.179	0.26902	36.959	36.807	37.076	-0.2195					10	6	2	0	0	0	0.03519	1	2962	2962		30.569	6.337	1	34090	+		11590	27398	7991	8008	13030	13030					0.0630327582910013
EKVPFAMDHDS	11	Unmodified	_EKVPFAMDHDS_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	638.2877807617188	2	638.287345	1274.56014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.601	1	16.393	15.893	16.893	-0.20777								0	0	0	1.3811	1	76	76		21.686	4.2177	1		+		11591	21134	7992	8009	13031	13031					-0.06616044821862488
EKVPGPPQVK	10	Unmodified	_EKVPGPPQVK_					0	0	0			REV__ENSG00000015676|ENST00000355451|NUDCD3	REV__ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.8169555664062	2	539.816399	1077.61824	-0.41259	-0.00022272	-0.59155	-0.00031933	-1.0041	-0.00054205	539.8161215744426	45.661	3.6537	45.408	45.055	48.709	-0.25252					242	100	8	0	0	0	0.6365	1	4405	4405		72.879	11.907	1	72785000	+		11592	19971	7993	8010	13032	13032					0.0825400488570267
EKVQANDP	8	Unmodified	_EKVQANDP_					0	0	0			REV__PRPF8|p.P2137A|1|0.26|ENSG00000174231|chr17:1651749-1651749|G/C|missense_variant	REV__PRPF8|p.P2137A|1|0.26|ENSG00000174231|chr17:1651749-1651749|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2540283203125	2	450.724707	899.43486	-0.037503	-1.6904E-05	0.21538	9.7078E-05	0.17788	8.0175E-05	450.72472906245474	37.049	0.46493	37.081	36.838	37.303	0.032269					18	11	2	0	0	0	0.027866	1	2912	2912		58.782	16.386	1	279090	+		11593	37410	7994	8011	13033	13033					-0.01887968895960057
EKVQANDP	8	Unmodified	_EKVQANDP_					0	0	0			REV__PRPF8|p.P2137A|1|0.26|ENSG00000174231|chr17:1651749-1651749|G/C|missense_variant	REV__PRPF8|p.P2137A|1|0.26|ENSG00000174231|chr17:1651749-1651749|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.724707	899.43486	1.6383	0.00073843	-1.7363	-0.0007826	-0.098015	-4.4178E-05	450.72400225223794	37.075	0.418	37.075	36.887	37.305	0	0.036032	-0.00097199	NaN	32.812	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258130	+		11594	37410	7994	8011							-0.01887968895960057
EKVQELYAP	9	Unmodified	_EKVQELYAP_					0	0	0		nc|ENSG00000142794|Q9H094-5|NBPF3;nc|ENSG00000142794|Q9H094-2|NBPF3;nc|ENSG00000142794|Q9H094-3|NBPF3;ENSG00000142794|ENST00000318249|NBPF3	nc|ENSG00000142794|Q9H094-5|NBPF3	nc|ENSG00000142794|Q9H094-5|NBPF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7636108398438	2	538.784764	1075.55498	-0.69179	-0.00037273	3.818	0.0020571	3.1262	0.0016844	538.7883400426517	33.919	0.119	33.914	33.829	33.948	-0.0045624					4	2	2	0	0	0	0.024344	1	2470	2470		54.776	0	1	22739			11595	5590	7995	8012	13034	13034					0.02022019377795914
EKVQELYAP	9	Unmodified	_EKVQELYAP_					0	0	0		nc|ENSG00000142794|Q9H094-5|NBPF3;nc|ENSG00000142794|Q9H094-2|NBPF3;nc|ENSG00000142794|Q9H094-3|NBPF3;ENSG00000142794|ENST00000318249|NBPF3	nc|ENSG00000142794|Q9H094-5|NBPF3	nc|ENSG00000142794|Q9H094-5|NBPF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7633666992188	2	538.784764	1075.55498	-1.4143	-0.00076198	-1.6827	-0.00090661	-3.0969	-0.0016686	538.7820318986647	34.168	0.16072	34.219	34.131	34.292	0.050255					5	3	2	0	0	0	0.024447	1	2465	2465		49.442	3.4896	1	25039			11596	5590	7995	8012	13035	13035					0.02022019377795914
EKVSYSYPV	9	Unmodified	_EKVSYSYPV_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.8085327148438	2	536.27149	1070.52843	-1.0028	-0.00053778	0.6989	0.0003748	-0.30392	-0.00016298	536.7736865327051	84.881	0.33426	84.808	84.589	84.924	-0.072769					11	7	2	0	0	0	0.024427	1	10607	10607		34.173	2.2177	1	58993			11597	3344	7996	8013	13036	13036					-0.004016695135305781
EKVTHTGQV	9	Unmodified	_EKVTHTGQV_					0	0	0		ENSG00000145494|ENST00000274137|NDUFS6;ENST00000510329.1_1_5:1801543-1802271:+|nuORF	ENSG00000145494|ENST00000274137|NDUFS6	ENSG00000145494|ENST00000274137|NDUFS6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.76629638671875	2	499.766906	997.519259	-0.051563	-2.577E-05	-0.87383	-0.00043671	-0.92539	-0.00046248	499.76634597347083	36.535	1.1256	36.535	35.994	37.12	0					84	30	6	0	0	0	0.31037	1	2911	2911		74.255	2.3776	1	7121200			11598	5817	7997	8014	13037	13037					0.020399819208023473
EKVTKRRP	8	Unmodified	_EKVTKRRP_					0	0	0			REV__ENSG00000134597|ENST00000305536|RBMX2	REV__ENSG00000134597|ENST00000305536|RBMX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.292724609375	2	507.314358	1012.61416	-0.5006	-0.00025396	-2.1917	-0.0011119	-2.6923	-0.0013658	507.31337773300055	21.469	0.2438	21.378	21.255	21.499	-0.090092					6	4	2	0	0	0	0.027866	1	647	647		31.955	1.4512	1	13256	+		11599	23465	7998	8015	13038	13038					0.108359601826578
EKVTKYCD	8	Unmodified	_EKVTKYCD_					0	0	0		nc|ENSG00000004948|P30988-5|CALCR;nc|ENSG00000004948|P30988-6|CALCR;nc|ENSG00000004948|P30988-3|CALCR;nc|ENSG00000004948|P30988-4|CALCR;ENSG00000004948|ENST00000426151|CALCR;nc|ENSG00000004948|P30988-1|CALCR	nc|ENSG00000004948|P30988-5|CALCR	nc|ENSG00000004948|P30988-5|CALCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79803466796875	2	493.236593	984.458632	-0.090489	-4.4633E-05	-2.1933	-0.0010818	-2.2838	-0.0011265	493.2354098380509	61.301	0.25205	61.074	60.937	61.189	-0.22663					8	6	2	0	0	0	0.027866	1	7046	7046		35.618	11.416	1	70699			11600	753	7999	8016	13039	13039					-0.03421871453792846
EKVVVKEKV	9	Unmodified	_EKVVVKEKV_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8082275390625	2	529.334424	1056.6543	-0.40311	-0.00021338	-0.88628	-0.00046914	-1.2894	-0.00068252	529.3341491452996	73.39	0.56628	73.113	72.799	73.365	-0.2769					28	13	3	0	0	0	0.024017	1	8654	8654		75.043	14.749	1	748710	+		11601	26200	8000	8017	13040	13040					0.12823462062578983
EKWMNVKV	8	Unmodified	_EKWMNVKV_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant;ENST00000558959.5_1_15:50271874-50336868:-|nuORF	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7911376953125	2	517.278595	1032.54264	0.54183	0.00028027	3.4632	0.0017915	4.005	0.0020717	517.280918837908	18.721	0.83886	18.564	18.002	18.84	-0.15637					23	16	2	0	0	0	0.027866	1	313	313		35.618	5.3006	1	15116			11602	2538	8001	8018	13041	13041					0.027667044337704283
EKYKRRPPAKR	11	Unmodified	_EKYKRRPPAKR_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.26043701171875	3	476.956393	1427.84735	-0.32696	-0.00015595	1.4668	0.00069958	1.1398	0.00054364	477.2910912139769	28.107	0.27395	27.955	27.847	28.121	-0.15195					9	6	2	0	0	0	0.024851	1	1605	1605		15.921	0	1	89427			11603	2562	8002	8019	13042	13042					0.1505401690230883
EKYLIVSAGAA	11	Unmodified	_EKYLIVSAGAA_					0	0	0		ENST00000602564.5_1_16:722464-722707:+|nuORF;ENST00000561711.1_1_16:721970-722707:+|nuORF	ENST00000602564.5_1_16:722464-722707:+|nuORF	ENST00000602564.5_1_16:722464-722707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.3138427734375	2	561.313689	1120.61282	-0.99104	-0.00055628	1.323	0.00074264	0.332	0.00018635	561.3142812658557	44.772	0.61769	44.561	44.292	44.91	-0.21109					43	15	4	0	0	0	1.0183	1	4183	4183		32.751	1.2207	1	1436300			11604	16832	8003	8020	13043	13043					0.05734281303261923
EKYNVPLN	8	Unmodified	_EKYNVPLN_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2738342285156	2	488.758549	975.502546	-0.20591	-0.00010064	0.18461	9.0227E-05	-0.021307	-1.0414E-05	488.7589537593069	52.554	0.26496	52.646	52.445	52.71	0.091938					10	6	2	0	0	0	0.027866	1	5561	5561		40.573	1.7665	1	102880			11605	1141	8004	8021	13044	13044					0.013814810348549145
EKYSESLLC	9	Unmodified	_EKYSESLLC_					0	0	0		ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	ENSG00000025772|ENST00000372813|TOMM34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.80029296875	2	536.254982	1070.49541	0.048147	2.5819E-05	-0.219	-0.00011744	-0.17086	-9.1623E-05	536.2542946613419	40.677	1.6956	40.554	39.666	41.361	-0.12317					112	46	3	0	0	0	0.024405	1	3701	3701		35.618	0	1	1238000			11606	989	8005	8022	13045	13045					-0.037016196278727875
ELAAKVHL	8	Unmodified	_ELAAKVHL_					0	0	0		ENSG00000173976|ENST00000555633|RAX2	ENSG00000173976|ENST00000555633|RAX2	ENSG00000173976|ENST00000555633|RAX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7765808105469	2	440.766178	879.517802	-0.11637	-5.129E-05	1.742	0.00076782	1.6256	0.00071653	440.76634378937825	22.038	0.38473	21.836	21.566	21.951	-0.20198					10	7	2	0	0	0	0.027866	1	720	720		31.955	0	1	20460			11607	8432	8006	8023	13046	13046					0.07322392622711504
ELAAKVHL	8	Unmodified	_ELAAKVHL_					0	0	0		ENSG00000173976|ENST00000555633|RAX2	ENSG00000173976|ENST00000555633|RAX2	ENSG00000173976|ENST00000555633|RAX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	440.766178	879.517802	0.10084	4.4447E-05	0.3521	0.0001552	0.45294	0.00019964	440.7658433628764	21.923	0.28375	21.737	21.583	21.866	-0.1859	-0.049184	-0.00071238	NaN	31.955	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13608			11608	8432	8006	8023							0.07322392622711504
ELAALPAPGG	10	Unmodified	_ELAALPAPGG_					0	0	0		ENST00000381482.7_1_20:2083916-2097333:+|nuORF	ENST00000381482.7_1_20:2083916-2097333:+|nuORF	ENST00000381482.7_1_20:2083916-2097333:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2899475097656	2	448.247818	894.481082	-0.039794	-1.7838E-05	0.70967	0.00031811	0.66987	0.00030027	448.2480318707898	53.04	0.52596	52.892	52.607	53.132	-0.14723					20	13	2	0	0	0	0.03519	1	5699	5699		44.117	0	1	140210			11609	13342	8007	8024	13047	13047					0.02962096006149295
ELAAPLLLL	9	Unmodified	_ELAAPLLLL_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.80743408203125	2	476.807511	951.600469	0.29453	0.00014043	-0.04089	-1.9497E-05	0.25364	0.00012094	476.80726373773	102.57	0.51749	102.4	102.2	102.72	-0.17178					27	11	3	0	0	0	0.78069	1	12750	12750		40.573	13.777	1	500120	+		11610	26200	8008	8025	13048	13048					0.12273289630866202
ELAASARILF	10	Unmodified	_ELAASARILF_					0	0	0			REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2571411132812	2	545.816399	1089.61824	0.40796	0.00022267	-0.78956	-0.00043096	-0.3816	-0.00020828	545.8158663034268	59.477	0.5926	59.296	59.032	59.624	-0.18134					25	14	2	0	0	0	0.03519	1	6582	6582		90.37	42.454	1	1345100	+		11611	28690	8009	8026	13049	13049					0.07702004885709357
ELAASARILF	10	Unmodified	_ELAASARILF_					0	0	0			REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2577514648438	2	545.816399	1089.61824	-0.26283	-0.00014346	-0.25462	-0.00013897	-0.51745	-0.00028243	545.8161045597489	59.63	0.59615	59.382	59.09	59.686	-0.24842					27	14	2	0	0	0	0.03519	1	6591	6591		79.713	10.926	1	967980	+		11612	28690	8009	8026	13050	13050					0.07702004885709357
ELADKYKWI	9	Unmodified	_ELADKYKWI_					0	0	0			REV__ENSG00000135905|ENST00000258390|DOCK10	REV__ENSG00000135905|ENST00000258390|DOCK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.2853393554688	2	583.316232	1164.61791	-1.0229	-0.0005967	-0.0072489	-4.2284E-06	-1.0302	-0.00060093	583.8178086309038	55.433	0.13419	55.287	55.188	55.322	-0.14609					5	3	2	0	0	0	0.024495	1	5945	5945		34.173	0	1	70105	+		11613	23592	8010	8027	13051	13051					0.042185851658587126
ELADRVGKV	9	Unmodified	_ELADRVGKV_					0	0	0		nc|ENSG00000064270|O75185-3|ATP2C2;ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;ATP2C2|p.N731Tfs*7|1|0.08|ENSG00000064270|chr16:84459160-84459160|A/-|frameshift_variant	nc|ENSG00000064270|O75185-3|ATP2C2	nc|ENSG00000064270|O75185-3|ATP2C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7659912109375	2	493.785099	985.555644	-0.010619	-5.2435E-06	0.79478	0.00039245	0.78416	0.0003872	493.7847516966022	42.605	0.63745	42.465	42.209	42.846	-0.13929					42	17	3	0	0	0	0.024209	1	3867	3867		56.721	26.217	1	717870			11614	18062	8011	8028	13052	13052					0.06228858817530636
ELADRVGKV	9	Unmodified	_ELADRVGKV_					0	0	0		nc|ENSG00000064270|O75185-3|ATP2C2;ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;ATP2C2|p.N731Tfs*7|1|0.08|ENSG00000064270|chr16:84459160-84459160|A/-|frameshift_variant	nc|ENSG00000064270|O75185-3|ATP2C2	nc|ENSG00000064270|O75185-3|ATP2C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7657470703125	2	493.785099	985.555644	-0.011578	-5.7172E-06	0.9749	0.00048139	0.96332	0.00047568	493.7847427596706	42.522	0.57034	42.548	42.255	42.825	0.026012					46	15	4	0	0	0	0.024381	1	3811	3811		37.159	11.709	1	785590			11615	18062	8011	8028	13053	13053					0.06228858817530636
ELADTLPE	8	Unmodified	_ELADTLPE_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.76116943359375	2	444.221465	886.428378	-0.31785	-0.0001412	-2.6408	-0.0011731	-2.9586	-0.0013143	444.2202417601462	23.547	1.0068	23.367	23.157	24.164	-0.17989					31	23	2	0	0	0	0.027866	1	993	993		30.504	0	1	89448			11616	3668	8012	8029	13054	13054					-0.019379068473199368
ELAELLLLT	9	Unmodified	_ELAELLLLT_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1;REV__SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.7835693359375	2	507.807708	1013.60086	-0.39126	-0.00019868	-0.89036	-0.00045213	-1.2816	-0.00065082	507.8074876665786	23.64	0.49526	23.46	23.242	23.738	-0.17989					13	11	2	0	0	0	0.024457	1	983	983		37.159	15.199	1	124490	+		11617	26775;23949	8013	8030	13055	13055					0.0946066456006065
ELAERLQPL	9	Unmodified	_ELAERLQPL_					0	0	0		ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2667846679688	2	534.806031	1067.59751	-0.45785	-0.00024486	2.5268	0.0013514	2.069	0.0011065	534.8061830327307	48.948	0.95446	48.948	48.482	49.437	0					42	26	3	0	0	0	0.023239	1	5043	5043		74.255	0	1	282110			11618	1932	8014	8031	13056	13056					0.06641414506043475
ELAERLQPL	9	Unmodified	_ELAERLQPL_					0	0	0		ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	ENSG00000090470|ENST00000204549|PDCD7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.806031	1067.59751	-0.52105	-0.00027866	0.14596	7.8062E-05	-0.37508	-0.0002006	534.8058813190053	49.223	0.45533	49.041	48.773	49.228	-0.18206	0.047396	-0.00023552	NaN	74.255	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506640			11619	1932	8014	8031							0.06641414506043475
ELAERVPAILM	11	Unmodified	_ELAERVPAILM_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3500366210938	2	621.349748	1240.68494	-1.0889	-0.0006766	1.5122	0.00093958	0.42325	0.00026298	621.3504396083733	102.94	0.41422	102.81	102.63	103.05	-0.12783					24	9	3	0	0	0	1.044	1	12818	12818		30.318	6.795	1	2566500			11620	872	8015	8032	13057	13057					0.07422872385291157
ELAESKCSEL	10	Unmodified	_ELAESKCSEL_					0	0	0		nc|ENSG00000143549|P06753-7|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENSG00000143549|ENST00000651641|TPM3	nc|ENSG00000143549|P06753-7|TPM3	nc|ENSG00000143549|P06753-7|TPM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3051147460938	2	554.763171	1107.51179	-1.1346	-0.00062941	-1.8324	-0.0010166	-2.967	-0.001646	554.7622211540667	43.755	0.28305	43.611	43.497	43.781	-0.14471					10	7	2	0	0	0	0.03519	1	4108	4108		93.143	2.7734	1	77197			11621	5663	8016	8033	13058	13058					-0.03766538461786695
ELAFNVTRKM	10	Unmodified	_ELAFNVTRKM_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5535888671875	3	403.553386	1207.63833	0.27663	0.00011164	0.1087	4.3865E-05	0.38533	0.0001555	403.5533249787895	29.472	1.6916	29.299	28.981	30.673	-0.17258					104	39	4	0	0	0	1.0639	1	1812	1812		37.508	6.9393	1	3766300			11622	5560	8017	8034	13059	13059					0.04281432554012099
ELAGKMKME	9	2 Oxidation (M)	_ELAGKM(Oxidation (M))KM(Oxidation (M))E_		ELAGKM(1)KM(1)E		ELAGKM(71)KM(71)E	0	0	2			REV__ENST00000539956.1_1_12:118573681-118573786:-|nuORF	REV__ENST00000539956.1_1_12:118573681-118573786:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2470092773438	2	534.756835	1067.49912	-0.64843	-0.00034675	1.4102	0.00075411	0.76177	0.00040736	534.7570619474087	73.487	0.47619	73.297	73.085	73.561	-0.19026					15	11	2	0	0	0	0.022704	1	8658	8658		70.816	35.198	1	209570	+		11623	34740	8018	8035	13060	13060		941;942			-0.0319327312565747
ELAGKMKME	9	2 Oxidation (M)	_ELAGKM(Oxidation (M))KM(Oxidation (M))E_					0	0	2			REV__ENST00000539956.1_1_12:118573681-118573786:-|nuORF	REV__ENST00000539956.1_1_12:118573681-118573786:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.756835	1067.49912	-0.67042	-0.00035851	0.22907	0.00012249	-0.44136	-0.00023602	534.7566460831796	73.71	0.37321	73.439	73.204	73.577	-0.27126	0.052965	-0.00071052	NaN	70.816	13	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155450	+		11624	34740	8018	8035				941;942			-0.0319327312565747
ELAGKMKME	9	2 Oxidation (M)	_ELAGKM(Oxidation (M))KM(Oxidation (M))E_					0	0	2			REV__ENST00000539956.1_1_12:118573681-118573786:-|nuORF	REV__ENST00000539956.1_1_12:118573681-118573786:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.756835	1067.49912	-0.78332	-0.00041889	1.5053	0.00080495	0.72193	0.00038606	534.7566397794117	73.412	0.33762	73.422	73.181	73.519	0.0096512	0.03597	0.00065439	NaN	70.816	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147160	+		11625	34740	8018	8035				941;942			-0.0319327312565747
ELAGQLRA	8	Unmodified	_ELAGQLRA_					0	0	0			REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.73712158203125	2	429.245609	856.476666	0.1217	5.2238E-05	0.34291	0.00014719	0.46461	0.00019943	429.24512365805145	40.066	0.6734	40.066	39.808	40.481	0					34	18	3	0	0	0	0.027866	1	3475	3475		31.955	6.5047	1	176250	+		11626	19476	8019	8036	13061	13061					0.04268631583215665
ELAHLCQV	8	Unmodified	_ELAHLCQV_					0	0	0			REV__nc|ENSG00000085433|O94967-2|WDR47	REV__nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2591857910156	2	456.73402	911.453487	0.13143	6.0027E-05	-3.246	-0.0014825	-3.1145	-0.0014225	456.7322879292456	61.623	0.71051	61.623	61.334	62.044	0					30	18	2	0	0	0	0.027866	1	7113	7113		40.573	16.37	1	146740	+		11627	20750	8020	8037	13062	13062					-0.005781305257528402
ELAIDFASKD	10	Unmodified	_ELAIDFASKD_					0	0	0			REV__ENSG00000143458|ENST00000368918|GABPB2	REV__ENSG00000143458|ENST00000368918|GABPB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.81396484375	2	554.779679	1107.5448	-0.11722	-6.5034E-05	-2.6062	-0.0014459	-2.7235	-0.0015109	554.7781755210269	58.456	0.929	58.273	58.054	58.983	-0.18335					38	22	3	0	0	0	0.03519	1	6445	6445		58.23	17.452	1	1738000	+		11628	24251	8021	8038	13063	13063					-0.00466588347421748
ELAIIVDL	8	Unmodified	_ELAIIVDL_					0	0	0			REV__ENST00000534362.1_1_11:122805775-122817581:+|nuORF	REV__ENST00000534362.1_1_11:122805775-122817581:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.266845703125	2	443.268219	884.521884	-0.55397	-0.00024556	-2.5007	-0.0011085	-3.0547	-0.0013541	443.2670353906837	29.431	1.1385	29.509	29.202	30.341	0.078344					83	27	4	0	0	0	1.0239	1	1758	1758		33.516	3.0119	1	3748000	+		11629	34638	8022	8039	13064	13064					0.07500437325757048
ELAIQKRL	8	Unmodified	_ELAIQKRL_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.3216552734375	2	485.805834	969.597115	-1.1598	-0.00056346	1.8776	0.00091215	0.71776	0.00034869	485.80567078739097	21.48	0.29361	21.267	21.069	21.363	-0.2128					9	5	2	0	0	0	0.027866	1	629	629		25.45	0	1	17857			11630	1147	8023	8040	13065	13065					0.11110039576851705
ELAKAKEKP	9	Unmodified	_ELAKAKEKP_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8181457519531	2	507.303124	1012.5917	-0.32554	-0.00016515	-0.40052	-0.00020318	-0.72605	-0.00036833	507.30321008614646	68.57	0.48553	68.308	67.939	68.424	-0.26166					17	11	2	0	0	0	0.024495	1	7937	7937		14.137	3.2716	1	63428	+		11631	19339	8024	8041	13066	13066					0.08590315994376851
ELAKDILVP	9	Unmodified	_ELAKDILVP_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.25311279296875	2	499.30005	996.585547	0.52245	0.00026086	0.10381	5.1834E-05	0.62626	0.00031269	499.2999745317582	95.5	0.85641	95.504	95.14	95.996	0.0041199					26	19	2	0	0	0	0.023181	1	12140	12140		60.972	18.576	1	127610			11632	6249	8025	8042	13067	13067					0.08711797762862261
ELAKHHVL	8	Unmodified	_ELAKHHVL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000151914|ENST00000680361|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7809143066406	2	473.777077	945.5396	0.38644	0.00018309	-0.7057	-0.00033435	-0.31926	-0.00015126	473.7767086474848	23.94	0.6225	23.725	23.554	24.177	-0.2151					19	13	2	0	0	0	0.027866	1	998	998		68.485	41.689	1	286800			11633	4256;6240;18250;18249	8026	8043	13068	13068					0.06465197371267095
ELAKHHVL	8	Unmodified	_ELAKHHVL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000151914|ENST00000680361|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.7806701660156	2	473.777077	945.5396	1.7715	0.00083928	-2.4124	-0.0011429	-0.64089	-0.00030364	473.77584404965637	23.813	0.57634	23.621	23.442	24.018	-0.19117					20	12	2	0	0	0	0.027866	1	955	955		56.721	21.52	1	263640			11634	4256;6240;18250;18249	8026	8043	13069	13069					0.06465197371267095
ELAKLVNEP	9	Unmodified	_ELAKLVNEP_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.78607177734375	2	506.787307	1011.56006	0.54713	0.00027728	-0.58711	-0.00029754	-0.039977	-2.026E-05	506.7870390032071	71.485	0.99411	71.197	70.844	71.838	-0.28858					54	25	3	0	0	0	0.024495	1	8727	8727		34.173	1.3601	1	947510	+		11635	24417	8027	8044	13070	13070					0.05474323240434842
ELAKQVIEY	9	Unmodified	_ELAKQVIEY_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2780151367188	2	546.800414	1091.58628	-0.98386	-0.00053797	-0.14418	-7.8836E-05	-1.128	-0.00061681	546.800137484715	62.25	0.46013	62.072	61.843	62.304	-0.17782					20	11	2	0	0	0	0.024523	1	7008	7008		21.96	0	1	478490			11636	2073	8028	8045	13071	13071					0.04414592411899321
ELAKRITE	8	Unmodified	_ELAKRITE_					0	0	0		ENSG00000161542|ENST00000446526|PRPSAP1;nc|ENSG00000161542|Q14558|PRPSAP1	ENSG00000161542|ENST00000446526|PRPSAP1	ENSG00000161542|ENST00000446526|PRPSAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2671813964844	2	480.279649	958.544745	0.4972	0.00023879	-1.3005	-0.00062462	-0.80334	-0.00038583	480.2789001883827	24.103	0.44467	23.887	23.644	24.089	-0.2151					15	9	2	0	0	0	0.027866	1	992	992		10.265	0	1	70249			11637	6878	8029	8046	13072	13072					0.06381456443227762
ELALFSGRLFL	11	Unmodified	_ELALFSGRLFL_					0	0	0		ENST00000495285.1_1_3:197257612-197260782:-|nuORF	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3700561523438	2	633.366256	1264.71796	0.31837	0.00020164	4.1352	0.0026191	4.4535	0.0028207	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	0.87847	1	12018	12018		52.937	3.4952	1	3419700			11638	15547	8030	8047	13073	13073					0.0961882249964674
ELALFSGRLFL	11	Unmodified	_ELALFSGRLFL_					0	0	0		ENST00000495285.1_1_3:197257612-197260782:-|nuORF	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	ENST00000495285.1_1_3:197257612-197260782:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.370849609375	2	633.366256	1264.71796	1.1238	0.00071176	3.4519	0.0021863	4.5757	0.0028981	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	0.6032	1	12342	12342		69.628	12.907	1	8250400			11639	15547	8030	8047	13074	13074					0.0961882249964674
ELALKKKIP	9	Unmodified	_ELALKKKIP_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.7792358398438	2	520.347335	1038.68012	0.87371	0.00045463	-1.3708	-0.00071328	-0.49707	-0.00025865	520.3466482610414	86.433	0.47911	86.291	86.059	86.538	-0.14218					14	10	2	0	0	0	0.024436	1	10471	10471		38.806	4.6336	1	46405			11640	10867	8031	8048	13075	13075					0.16232356304840323
ELALKKKIP	9	Unmodified	_ELALKKKIP_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.7792358398438	2	520.347335	1038.68012	0.3166	0.00016474	-1.0044	-0.00052264	-0.68781	-0.0003579	520.3468055722458	86.481	0.39403	86.344	86.093	86.487	-0.13734					13	8	3	0	0	0	0.024487	1	10466	10466		17.365	3.2278	1	44822			11641	10867	8031	8048	13076	13076					0.16232356304840323
ELALQQNQ	8	Unmodified	_ELALQQNQ_					0	0	0		ENSG00000172061|ENST00000347624|LRRC15;nc|ENSG00000172061|Q8TF66-2|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.24615478515625	2	472.245806	942.47706	0.093499	4.4154E-05	0.14207	6.709E-05	0.23556	0.00011124	472.24574007371564	22.322	0.98825	22.247	21.841	22.829	-0.075296					55	20	4	0	0	0	0.845	1	771	771		55.504	2.1528	1	667420			11642	8238	8032	8049	13077	13077					0.0035200651242348613
ELALQQPQ	8	Unmodified	_ELALQQPQ_					0	0	0		ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.23028564453125	2	463.750724	925.486896	0.34094	0.00015811	-0.61471	-0.00028507	-0.27377	-0.00012696	463.75093628983996	37.076	0.51664	37.013	36.789	37.305	-0.063389					17	13	2	0	0	0	0.027866	1	3020	3020		42.396	14.514	1	327130			11643	12873	8033	8050	13078	13078					0.021171945178025453
ELALQQPQ	8	Unmodified	_ELALQQPQ_					0	0	0		ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.750724	925.486896	0.30554	0.00014169	0.47541	0.00022047	0.78095	0.00036217	463.7506172060433	37.202	0.65526	37.009	36.735	37.39	-0.193	-0.05711	-8.4415E-05	NaN	19.997	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189460			11644	12873	8033	8050							0.021171945178025453
ELALQQPQ	8	Unmodified	_ELALQQPQ_					0	0	0		ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.750724	925.486896	-0.90762	-0.00042091	1.1834	0.00054882	0.2758	0.0001279	463.7512076315834	37.254	0.54382	37.034	36.807	37.35	-0.2195	-0.031695	0.00057227	NaN	19.997	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134880			11645	12873	8033	8050							0.021171945178025453
ELALQQPQ	8	Unmodified	_ELALQQPQ_					0	0	0		ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	ENST00000367638.1_1_1:178514379-178514550:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.750724	925.486896	0.049247	2.2838E-05	-0.26396	-0.00012241	-0.21471	-9.9573E-05	463.75046279517807	37.21	0.58779	37.001	36.726	37.313	-0.2092	-0.064858	-0.00077018	NaN	19.997	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136340			11646	12873	8033	8050							0.021171945178025453
ELAMALLQL	9	Unmodified	_ELAMALLQL_					0	0	0			REV__nc|ENSG00000168229|Q13258-2|PTGDR	REV__nc|ENSG00000168229|Q13258-2|PTGDR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.302734375	2	501.288628	1000.5627	-0.23202	-0.00011631	3.8273	0.0019186	3.5953	0.0018023	501.29041396945354	24.836	0.48203	24.661	24.425	24.907	-0.17484					16	10	2	0	0	0	0.023007	1	1102	1102		99.375	42.654	1	78636	+		11647	26239	8034	8051	13079	13079					0.06244455373735036
ELAMDYVSI	9	Unmodified	_ELAMDYVSI_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7666015625	2	520.752075	1039.4896	-0.58846	-0.00030644	4.1561	0.0021643	3.5676	0.0018578	520.7539578775643	47.792	0.40968	47.695	47.557	47.966	-0.097553					14	10	2	0	0	0	0.023417	1	4684	4684		79.451	0	1	150660			11648	9489	8035	8052	13080	13080					-0.028567181395374064
ELAMIRKSL	9	Unmodified	_ELAMIRKSL_					0	0	0			REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.765380859375	2	530.812802	1059.61105	-0.92095	-0.00048885	-1.5872	-0.00084251	-2.5081	-0.0013314	530.8116857306704	40.232	0.6179	40.255	39.977	40.595	0.023006					20	16	2	0	0	0	0.024261	1	3502	3502		74.255	24.813	1	111910	+		11649	26253	8036	8053	13081	13081					0.08362949013644538
ELAPFVGRMSA	11	Unmodified	_ELAPFVGRMSA_					0	0	0		ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENSG00000175866|ENST00000428708|BAIAP2	ENSG00000175866|ENST00000428708|BAIAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.3425903320312	2	589.305341	1176.59613	-1.6951	-0.00099892	-1.5804	-0.00093132	-3.2755	-0.0019302	589.302546306479	92.644	0.4221	92.644	92.372	92.794	0					15	9	2	0	0	0	0.024756	1	11720	11720		36.447	0	1	106000			11650	8593	8037	8054	13082	13082					0.014894571456579797
ELAPFYVPGV	10	Unmodified	_ELAPFYVPGV_					0	0	0			REV__ENST00000375838.5_1_1:15853332-15855683:+|nuORF	REV__ENST00000375838.5_1_1:15853332-15855683:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	546.292225	1090.5699	-0.41121	-0.00022464	2.4405	0.0013332	2.0293	0.0011086	546.2935102625742	87.226	0.54516	87.089	86.87	87.415	-0.13734					22	12	3	0	0	0	0.03519	1	10614	10614		29.15	4.9468	1	179140	+		11651	31339	8038	8055	13083	13083					0.028235112458105505
ELAPGPIPQV	10	Unmodified	_ELAPGPIPQV_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2867126464844	2	510.78985	1019.56515	0.068805	3.5145E-05	0.01632	8.3363E-06	0.085125	4.3481E-05	510.7897337199099	58.221	1.0885	58.221	57.946	59.035	0					38	29	2	0	0	0	0.03519	1	6682	6682		32.812	10.853	1	1027700			11652	10614	8039	8056	13084	13084					0.05614627103057046
ELAPGVWGAP	10	Unmodified	_ELAPGVWGAP_					0	0	0			REV__ENST00000399932.7_1_16:315646-315760:+|nuORF	REV__ENST00000399932.7_1_16:315646-315760:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.90203857421875	2	498.761092	995.507631	-1.1201	-0.00055867	-0.2237	-0.00011157	-1.3438	-0.00067024	498.76082265590236	44.226	0.21548	44.081	43.883	44.099	-0.14471					8	5	2	0	0	0	0.03519	1	4159	4159		30.504	2.6214	1	113000	+		11653	31843	8040	8057	13085	13085					0.009697848974610679
ELAPYYVP	8	Unmodified	_ELAPYYVP_					0	0	0			REV__ENSG00000171608|ENST00000377346|PIK3CD	REV__ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.7772521972656	2	476.244744	950.474934	-0.13581	-6.4677E-05	0.26791	0.00012759	0.13211	6.2915E-05	476.2444903924147	69.212	0.57211	69.227	68.974	69.546	0.015129					20	14	2	0	0	0	0.027866	1	8210	8210		54.765	17.736	1	127250	+		11654	26584	8041	8058	13086	13086					-0.0022842222538201895
ELAQFHNAH	9	Unmodified	_ELAQFHNAH_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1;ENST00000490827.1_1_10:62631931-62634780:-|nuORF	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2466430664062	2	533.756872	1065.49919	-0.70798	-0.00037789	-1.5043	-0.00080292	-2.2123	-0.0011808	533.7563969416718	33.877	1.0245	33.934	33.5	34.524	0.056568					46	25	3	0	0	0	0.023181	1	2519	2519		60.972	22.166	1	831850			11655	1481	8042	8059	13087	13087					-0.030937690191422007
ELAQHLSVL	9	Unmodified	_ELAQHLSVL_					0	0	0			REV__nc|ENSG00000158161|Q99504-4|EYA3	REV__nc|ENSG00000158161|Q99504-4|EYA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.3036193847656	2	505.287474	1008.5604	-0.36234	-0.00018308	-0.56223	-0.00028409	-0.92456	-0.00046717	505.2870511728149	23.691	0.24444	23.512	23.318	23.563	-0.17989					6	5	2	0	0	0	0.024292	1	936	936		49.442	15.269	1	20276	+		11656	25179	8043	8060	13088	13088					0.056457429602687625
ELAQQHASGE	10	Unmodified	_ELAQQHASGE_					0	0	0		sp|P03188|GB_EBVB9EnvelopeglycoproteinBOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gBPE=1SV=1	sp|P03188|GB_EBVB9EnvelopeglycoproteinBOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gBPE=1SV=1	sp|P03188|GB_EBVB9EnvelopeglycoproteinBOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gBPE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.236572265625	2	535.249077	1068.4836	-0.85366	-0.00045692	0.49604	0.00026551	-0.35762	-0.00019142	535.2492126082326	69.534	0.79257	69.267	68.87	69.662	-0.26725					27	18	2	0	0	0	0.03519	1	8044	8044		36.447	0	1	225610			11657	37920	8044	8061	13089	13089					-0.047901003268407294
ELAQQRLKQL	10	Unmodified	_ELAQQRLKQL_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.8864440917969	3	409.5787	1225.71427	0.4375	0.00017919	-1.0102	-0.00041374	-0.57265	-0.00023455	409.5781323171174	34.049	0.71551	34.099	33.726	34.441	0.050251					25	16	3	0	0	0	0.03519	1	2503	2503		26.063	6.0329	1	173180	+		11658	22509	8045	8062	13090	13090					0.11044152725798995
ELARLVELI	9	Unmodified	_ELARLVELI_					0	0	0			REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;REV__NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant	REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3248291015625	2	528.326599	1054.63865	-0.12806	-6.7658E-05	-0.69507	-0.00036722	-0.82313	-0.00043488	528.326114244234	66.032	1.1741	66.062	65.774	66.948	0.030098					72	32	5	0	0	0	0.39228	1	7787	7787		66.429	2.222	1	12478000	+		11659	26156;37267	8046	8063	13091	13091					0.11351175545541992
ELARMNAKL	9	Unmodified	_ELARMNAKL_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2952270507812	2	523.294776	1044.575	0.019316	1.0108E-05	-0.061449	-3.2156E-05	-0.042133	-2.2048E-05	523.2947868914312	35.908	1.4191	35.692	35.31	36.729	-0.21661					102	37	5	0	0	0	0.59099	1	2783	2783		53.351	3.3179	1	19574000	+		11660	26228	8047	8064	13092	13092					0.05449491836770903
ELARNPNVQ	9	Unmodified	_ELARNPNVQ_					0	0	0		nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000160882|ENST00000292427|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1	nc|ENSG00000160882|P15538-2|CYP11B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.241455078125	2	520.777805	1039.54106	0.24111	0.00012557	-2.3378	-0.0012175	-2.0967	-0.0010919	521.2768259851464	76.244	0.48956	75.992	75.867	76.356	-0.25163					13	11	2	0	0	0	0.024523	1	9050	9050		21.96	0	1	68976			11661	6847	8048	8065	13093	13093					0.022867866693559336
ELARQRLL	8	Unmodified	_ELARQRLL_					0	0	0		ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8	ENSG00000204510|ENST00000697200|PRAMEF7	ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2828674316406	2	499.808908	997.603263	-1.0811	-0.00054033	0.43816	0.000219	-0.64291	-0.00032133	499.80888039148823	37.805	0.5143	37.805	37.523	38.037	0					24	14	2	0	0	0	0.027866	1	3110	3110		55.504	21.332	1	657920			11662	9129	8049	8066	13094	13094					0.10436557808372982
ELARRPVRAL	10	Unmodified	_ELARRPVRAL_					0	0	0			REV__ENSG00000170382|ENST00000367177|LRRN2	REV__ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.8660278320312	2	590.867289	1179.72002	-0.3811	-0.00022518	-1.4461	-0.00085448	-1.8272	-0.0010797	590.8667438142205	102.45	1.104	102.28	101.97	103.08	-0.17178					75	26	5	0	0	0	1.0992	1	12698	12698		32.812	0	1	5015400	+		11663	26464	8050	8067	13095	13095					0.13735296028130506
ELARRTEDD	9	Unmodified	_ELARRTEDD_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8180541992188	2	552.767634	1103.52072	-1.1121	-0.00061474	-3.4656	-0.0019157	-4.5777	-0.0025304	552.7648048033034	39.266	0.2856	39.168	38.949	39.234	-0.098755					9	7	2	0	0	0	0.024405	1	3320	3320		27.882	10.517	1	50597	+		11664	29110	8051	8068	13096	13096					-0.026904287810793903
ELASCVREYC	10	Unmodified	_ELASCVREYC_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.8421630859375	2	586.757366	1171.50018	-0.37374	-0.00021929	3.7315	0.0021895	3.3578	0.0019702	586.759560951305	52.91	1.8572	52.783	51.75	53.607	-0.12705					76	48	2	0	0	0	0.03519	1	5556	5556		23.523	13.257	1	344680	+		11665	26836	8052	8069	13097	13097					-0.07871058756768434
ELASKRNVI	9	Unmodified	_ELASKRNVI_					0	0	0		ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000100614|P35813-3|PPM1A	ENSG00000100614|ENST00000395076|PPM1A	ENSG00000100614|ENST00000395076|PPM1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.281982421875	2	515.306198	1028.59784	-0.48917	-0.00025207	1.0717	0.00055227	0.58256	0.0003002	515.3062886612478	65.397	0.30301	65.397	65.226	65.529	0					23	8	3	0	0	0	0.024263	1	7769	7769		60.972	3.1607	1	1059800			11666	2230	8053	8070	13098	13098					0.08468834225891442
ELASKVTRED	10	Unmodified	_ELASKVTRED_					0	0	0			REV__ROR2|p.D580E|1|0.11|ENSG00000169071|chr9:91724754-91724754|G/T|missense_variant	REV__ROR2|p.D580E|1|0.11|ENSG00000169071|chr9:91724754-91724754|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.7826538085938	2	574.30131	1146.58807	-0.18452	-0.00010597	-3.4081	-0.0019573	-3.5926	-0.0020633	574.2992819906456	66.461	0.42282	66.213	65.981	66.404	-0.2484					29	10	4	0	0	0	0.03519	1	7607	7607		26.063	1.8606	1	308900	+		11667	37449	8054	8071	13099	13099					0.020636014298588634
ELATLKGNN	9	Unmodified	_ELATLKGNN_					0	0	0		ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29205322265625	2	480.261456	958.50836	0.57379	0.00027557	-1.8427	-0.00088498	-1.2689	-0.00060941	480.2604514962062	55.955	0.21273	55.955	55.822	56.035	0					9	5	2	0	0	0	0.024506	1	6205	6205		23.042	3.6825	1	112530			11668	6272	8055	8072	13100	13100					0.02744579546526893
ELATPDLEL	9	Unmodified	_ELATPDLEL_					0	0	0			REV__ENST00000586271.1_1_17:76120592-76121921:-|nuORF	REV__ENST00000586271.1_1_17:76120592-76121921:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7637023925781	2	500.763497	999.512442	-0.00619	-3.0997E-06	-0.13013	-6.5162E-05	-0.13632	-6.8262E-05	500.76340134071575	99.566	0.78098	99.576	99.046	99.827	0.010231					37	17	3	0	0	0	0.70186	1	12679	12679		45.952	5.3793	1	500290	+		11669	24100	8056	8073	13101	13101					0.012666242495811275
ELATPSEQHLS	11	Unmodified	_ELATPSEQHLS_					0	0	0			REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.55487060546875	3	404.534937	1210.58298	0.26916	0.00010888	2.7048	0.0010942	2.9739	0.0012031	404.5360223600936	22.706	0.22877	22.521	22.325	22.554	-0.18539					5	4	2	0	0	0	0.024762	1	802	802		21.032	7.5243	1	10208	+		11670	30540	8057	8074	13102	13102					-0.013887024327459585
ELATRLFSV	9	Unmodified	_ELATRLFSV_					0	0	0		nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000133256|ENST00000496514|PDE6B	nc|ENSG00000133256|P35913-2|PDE6B	nc|ENSG00000133256|P35913-2|PDE6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2614135742188	2	518.295299	1034.57605	-0.59134	-0.00030649	0.07286	3.7763E-05	-0.51848	-0.00026873	518.2952617297025	57.879	0.31276	57.702	57.514	57.826	-0.17775					11	7	2	0	0	0	0.024539	1	6348	6348		20.947	0	1	523920			11671	4697	8058	8075	13103	13103					0.060140294773418645
ELATSMLKKLP	11	Unmodified	_ELATSMLKKLP_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	OPSCC_39_ClassI_Rep-3	3	410.57342529296875	3	410.909058	1229.70534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.704	1	17.765	17.265	18.265	0.06036								0	0	0	1.615	1	165	165		10.104	2.7042	1		+		11672	26603	8059	8076	13104	13104					0.09968043045114428
ELAVYHFTF	9	Unmodified	_ELAVYHFTF_					0	0	0			REV__ENST00000466749.5_1_3:137906401-137907322:+|nuORF	REV__ENST00000466749.5_1_3:137906401-137907322:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7225341796875	2	563.782025	1125.5495	-0.65598	-0.00036983	1.3885	0.00078281	0.73252	0.00041298	563.7824974985951	49.056	0.34362	48.955	48.803	49.147	-0.1008					15	8	2	0	0	0	0.024457	1	4937	4937		29.15	6.1071	1	236360	+		11673	33048	8060	8077	13105	13105					-0.008256594140220841
ELAYFVTE	8	Unmodified	_ELAYFVTE_					0	0	0			REV__nc|ENSG00000179454|Q9NXS3-2|KLHL28	REV__nc|ENSG00000179454|Q9NXS3-2|KLHL28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2599182128906	2	486.239658	970.464763	-0.93163	-0.000453	-3.2228	-0.001567	-4.1544	-0.00202	486.2381157133014	36.361	0.41251	36.399	36.133	36.545	0.038044					17	11	2	0	0	0	0.027866	1	2831	2831		12.207	5.0135	1	79550	+		11674	27268	8061	8078	13106	13106					-0.021650299506177362
ELCCRACVSFY	11	Unmodified	_ELCCRACVSFY_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	646.3665771484375	2	647.274869	1292.53518	-2.2347	-0.0014465	1.8958	0.0012271	-0.33896	-0.0002194	647.2759399005935	45.886	0.55448	45.789	45.597	46.152	-0.096649					43	14	4	0	0	0	0.024749	1	4445	4445		35.152	28.839	1	1635800			11675	6864	8062	8079	13107	13107					-0.09938139220457742
ELCGDLPI	8	Unmodified	_ELCGDLPI_					0	0	0		nc|ENSG00000136110|O75829-2|CNMD;ENSG00000136110|ENST00000377962|CNMD	nc|ENSG00000136110|O75829-2|CNMD	nc|ENSG00000136110|O75829-2|CNMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.7378845214844	2	430.215129	858.415705	-0.41871	-0.00018013	1.7486	0.00075229	1.3299	0.00057215	430.2155553248496	40.18	0.61153	39.95	39.697	40.308	-0.23021					22	15	2	0	0	0	0.027866	1	3417	3417		33.516	6.7195	1	291710			11676	4984	8063	8080	13108	13108					-0.019166415112067625
ELCKLQGANP	10	Unmodified	_ELCKLQGANP_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3048706054688	2	536.776416	1071.53828	-0.27765	-0.00014904	4.202	0.0022555	3.9244	0.0021065	537.28078728009	72.535	0.15994	72.535	72.454	72.614	0					5	3	2	0	0	0	0.03519	1	8826	8826		40.058	7.2458	1	51660	+		11677	20028	8064	8081	13109	13109					0.005371952202267494
ELCKRHCVLL	10	Unmodified	_ELCKRHCVLL_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.8768005371094	3	405.222983	1212.64712	0.19902	8.0649E-05	-2.2448	-0.00090965	-2.0458	-0.000829	405.2219681826125	50.171	0.78143	49.991	49.681	50.462	-0.18071					46	20	3	0	0	0	0.03519	1	5046	5046		30.569	8.7884	1	1059700	+		11678	23801	8065	8082	13110	13110					0.04930082918849621
ELCKSLLLL	9	Unmodified	_ELCKSLLLL_					0	0	0		ENST00000313486.11_1_17:1422931-1423162:-|nuORF	ENST00000313486.11_1_17:1422931-1423162:-|nuORF	ENST00000313486.11_1_17:1422931-1423162:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.3094482421875	2	516.312103	1030.60965	-0.47375	-0.0002446	-2.9736	-0.0015353	-3.4473	-0.0017799	516.3103791886736	103.6	0.72993	103.6	103.25	103.98	0					46	17	3	0	0	0	0.20967	1	13294	13294		87.754	5.4493	1	669220			11679	12103	8066	8083	13111	13111					0.09557314924904858
ELCKWEEQ	8	Unmodified	_ELCKWEEQ_					0	0	0			REV__ENSG00000204611|ENST00000600228|ZNF616	REV__ENSG00000204611|ENST00000600228|ZNF616	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7855224609375	2	532.739499	1063.46445	-0.50186	-0.00026736	-2.3105	-0.0012309	-2.8123	-0.0014982	532.7384883679969	45.763	0.23977	45.806	45.751	45.991	0.043877					10	6	2	0	0	0	0.027866	1	4414	4414		62.107	16.135	1	385630	+		11680	28624	8067	8084	13112	13112					-0.06474772942124218
ELCLLSLVH	9	Unmodified	_ELCLLSLVH_					0	0	0		ENSG00000135960|ENST00000258443|EDAR;nc|ENSG00000135960|Q9UNE0-2|EDAR	ENSG00000135960|ENST00000258443|EDAR	ENSG00000135960|ENST00000258443|EDAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7686767578125	2	513.786253	1025.55795	-0.72204	-0.00037097	3.3829	0.0017381	2.6609	0.0013671	513.7878858777133	33.537	0.91594	33.537	33.056	33.972	0					54	24	3	0	0	0	0.024487	1	2409	2409		24.203	0	1	1331600			11681	4959	8068	8085	13113	13113					0.04619571230955444
ELCPFGHGAV	10	Unmodified	_ELCPFGHGAV_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8087158203125	2	515.244752	1028.47495	-0.19786	-0.00010195	4.4153	0.0022749	4.2174	0.002173	515.2467621076048	67.454	0.59033	67.454	67.165	67.755	0					19	14	2	0	0	0	0.03519	1	8057	8057		27.882	0	1	109500			11682	5560	8069	8086	13114	13114					-0.038147454970157924
ELCPMGTPI	9	Unmodified	_ELCPMGTPI_					0	0	0			REV__nc|ENSG00000162782|Q8NAT2|TDRD5	REV__nc|ENSG00000162782|Q8NAT2|TDRD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29351806640625	2	480.730089	959.445625	0.12794	6.1503E-05	4.2389	0.0020378	4.3668	0.0020993	480.7319403617664	56.542	1.6046	56.542	55.927	57.532	0					68	44	2	0	0	0	0.024436	1	6257	6257		38.806	5.2906	1	280330	+		11683	36847	8070	8087	13115	13115					-0.03572025837513593
ELCRSCEHPL	10	Unmodified	_ELCRSCEHPL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	592.7880249023438	2	593.770808	1185.52706	-0.63164	-0.00037505	3.0309	0.0017996	2.3992	0.0014246	593.7725503607485	52.362	0.58591	52.178	51.889	52.475	-0.18404					38	14	3	0	0	0	0.03519	1	5424	5424		40.778	7.9657	1	1461600			11684	2928	8071	8088	13116	13116					-0.05827950145567229
ELCVISRKF	9	Unmodified	_ELCVISRKF_					0	0	0			REV__ENSG00000068784|ENST00000263736|SRBD1	REV__ENSG00000068784|ENST00000263736|SRBD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2693481445312	2	547.804977	1093.5954	-0.0084728	-4.6415E-06	-2.9197	-0.0015994	-2.9282	-0.0016041	547.8032785066425	56.111	0.7924	55.895	55.598	56.39	-0.21607					65	20	4	0	0	0	0.024427	1	6022	6022		26.693	0	1	1268600	+		11685	20387	8072	8089	13117	13117					0.05234662496582132
ELCWLHLH	8	Unmodified	_ELCWLHLH_					0	0	0			REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3146362304688	2	525.763112	1049.51167	0.085067	4.4725E-05	2.5668	0.0013495	2.6518	0.0013942	525.7647144738559	74.778	0.65607	74.778	74.298	74.955	0					20	15	2	0	0	0	0.027866	1	9136	9136		35.201	0	1	79921	+		11686	36808	8073	8090	13118	13118					-0.011104488804676294
ELDAASVQTE	10	Unmodified	_ELDAASVQTE_					0	0	0			REV__ENSG00000166169|ENST00000370162|POLL	REV__ENSG00000166169|ENST00000370162|POLL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.796630859375	2	531.751118	1061.48768	-0.77423	-0.0004117	-4.2698	-0.0022705	-5.0441	-0.0026822	531.7510086938386	93.805	0.16145	93.811	93.689	93.85	0.0059814					5	3	2	0	0	0	0.03519	1	11843	11843		18.262	9.4398	1	27314	+		11687	25984	8074	8091	13119	13119					-0.04060055623813241
ELDACIPLND	10	Unmodified	_ELDACIPLND_					0	0	0			REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.2529907226562	2	551.757889	1101.50123	-0.45554	-0.00025135	0.067001	3.6969E-05	-0.38854	-0.00021438	551.7576037627532	45.622	0.54402	45.666	45.512	46.056	0.043877					17	15	2	0	0	0	0.03519	1	4444	4444		27.047	0	1	230340	+		11688	32996	8075	8092	13120	13120					-0.04546521116208169
ELDAEVLEV	9	Unmodified	_ELDAEVLEV_					0	0	0		SIL1-DNAJC18|1|fusion;ENSG00000120725|ENST00000394817|SIL1	SIL1-DNAJC18|1|fusion	SIL1-DNAJC18|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2981872558594	2	508.760955	1015.50736	-0.24315	-0.00012371	3.3942	0.0017268	3.151	0.0016031	508.7629045524639	30.586	0.46499	30.436	30.219	30.684	-0.14952					13	10	2	0	0	0	0.024263	1	1956	1956		60.972	18.576	1	53767			11689	37874	8076	8093	13121	13121					0.0002232038694955918
ELDAFLSSP	9	Unmodified	_ELDAFLSSP_					0	0	0			REV__ENSG00000183496|ENST00000329713|MEX3B	REV__ENSG00000183496|ENST00000329713|MEX3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.3368835449219	2	489.742565	977.470577	-0.26839	-0.00013144	3.8647	0.0018927	3.5963	0.0017613	489.7443827685562	82.174	0.74863	82.174	81.83	82.579	0					26	17	2	0	0	0	0.024427	1	10266	10266		42.396	13.247	1	444510	+		11690	27577	8077	8094	13122	13122					-0.01905931438943753
ELDDLPKEKL	10	Unmodified	_ELDDLPKEKL_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.5548095703125	3	400.555449	1198.64452	0.16148	6.4681E-05	-1.9122	-0.00076596	-1.7508	-0.00070128	400.5545899719665	26.834	0.59704	26.821	26.537	27.134	-0.012983					41	14	5	0	0	0	1.037	1	1409	1409		41.08	3.2685	1	1864900			11691	2120	8078	8095	13123	13123					0.05314229266514303
ELDDLPKEKL	10	Unmodified	_ELDDLPKEKL_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.5546875	3	400.555449	1198.64452	2.0792	0.00083283	-3.3983	-0.0013612	-1.3191	-0.00052837	400.55390967090665	26.674	0.63747	26.755	26.499	27.136	0.081291					46	15	5	0	0	0	0.99657	1	1327	1327		46.457	5.0302	1	1555500			11692	2120	8078	8095	13124	13124					0.05314229266514303
ELDDLTEKI	9	Unmodified	_ELDDLTEKI_					0	0	0		ENST00000480001.5_1_3:25470222-25636040:+|nuORF;nc|ENSG00000077092|P10826-3|RARB;ENSG00000077092|ENST00000330688|RARB;nc|ENSG00000077092|P10826|RARB	ENST00000480001.5_1_3:25470222-25636040:+|nuORF	ENST00000480001.5_1_3:25470222-25636040:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2793579101562	2	538.279512	1074.54447	-1.0991	-0.00059162	0.95485	0.00051398	-0.14424	-7.7642E-05	538.2798669529697	45.661	0.70971	45.51	45.244	45.954	-0.15156					44	20	3	0	0	0	0.4752	1	4438	4438		60.972	2.19	1	3651500			11693	1598	8079	8096	13125	13125					0.010179919327129028
ELDELCRGH	9	Unmodified	_ELDELCRGH_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.3038940429688	2	536.248023	1070.48149	-1.3615	-0.00073008	1.2291	0.00065913	-0.1323	-7.0947E-05	536.2488272437902	35.029	0.29313	35.008	34.866	35.159	-0.021763					9	7	2	0	0	0	0.024541	1	2631	2631		14.865	7.6715	1	77108	+		11694	25309	8080	8097	13126	13126					-0.050928523363154454
ELDELCRGH	9	Unmodified	_ELDELCRGH_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.248023	1070.48149	-1.0588	-0.00056778	0.90251	0.00048397	-0.15629	-8.381E-05	536.2485669562943	35.216	0.22903	35.029	34.911	35.14	-0.18675	-0.03014	-0.00026495	NaN	20.947	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49579	+		11695	25309	8080	8097							-0.050928523363154454
ELDEPSVYF	9	Unmodified	_ELDEPSVYF_					0	0	0			REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.7872924804688	2	549.75313	1097.49171	-0.6747	-0.00037092	-3.5578	-0.0019559	-4.2325	-0.0023268	549.7508775001137	66.434	0.23167	66.152	65.981	66.213	-0.28148					7	5	2	0	0	0	0.024541	1	7879	7879		31.955	5.2619	1	68960	+		11696	21189	8081	8098	13127	13127					-0.05313966130074732
ELDEPSVYF	9	Unmodified	_ELDEPSVYF_					0	0	0			REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.75313	1097.49171	-0.67769	-0.00037256	-4.2714	-0.0023482	-4.9491	-0.0027208	549.7509682661654	66.282	0.70798	66.069	65.67	66.378	-0.21327	-0.041684	-0.00036752	NaN	17.365	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104230	+		11697	21189	8081	8098							-0.05313966130074732
ELDETRGRA	9	Unmodified	_ELDETRGRA_					0	0	0		ENST00000499732.2_1_11:65190358-65190571:+|nuORF	ENST00000499732.2_1_11:65190358-65190571:+|nuORF	ENST00000499732.2_1_11:65190358-65190571:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.7791137695312	2	523.764894	1045.51524	-0.43071	-0.00022559	-4.3283	-0.002267	-4.759	-0.0024926	524.2646308967618	77.953	0.37465	77.969	77.78	78.155	0.015907					14	8	2	0	0	0	0.024447	1	9583	9583		40.778	0	1	75577			11698	15642	8082	8099	13128	13128					-0.0057010757288935565
ELDFEAKTSY	10	Unmodified	_ELDFEAKTSY_					0	0	0		CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant;CDH7|p.A734Vfs*15|1|0.19|ENSG00000081138|chr18:65880737-65880737|C/-|frameshift_variant;ENSG00000081138|ENST00000397968|CDH7	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5595703125	3	401.524038	1201.55028	0.92124	0.0003699	2.9132	0.0011697	3.8345	0.0015396	401.5250123265121	35.786	1.1387	35.574	35.233	36.372	-0.21246					50	30	3	0	0	0	0.03519	1	2709	2709		36.318	11.25	1	810450			11699	240	8083	8100	13129	13129					-0.0424290955561446
ELDFFEIL	8	Unmodified	_ELDFFEIL_					0	0	0		nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.313720703125	2	513.263133	1024.51171	-0.07684	-3.9439E-05	-2.0527	-0.0010536	-2.1295	-0.001093	513.2616627245883	50.393	0.73101	50.242	49.924	50.655	-0.1512					32	21	3	0	0	0	0.027866	1	5279	5279		18.324	0	1	350510			11700	10200	8084	8101	13130	13130					0.0004382960053135321
ELDFMEVTN	9	Unmodified	_ELDFMEVTN_					0	0	0			REV__ENST00000471811.1_1_3:49211676-49212464:+|nuORF	REV__ENST00000471811.1_1_3:49211676-49212464:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2689208984375	2	549.244615	1096.47468	-1.2873	-0.00070706	-3.6747	-0.0020183	-4.962	-0.0027253	549.2419904595507	56.108	0.43672	55.892	55.602	56.038	-0.21551					15	11	2	0	0	0	0.024523	1	6009	6009		21.96	0	1	102820	+		11701	27805	8085	8102	13131	13131					-0.0697021000753466
ELDGLWSFR	9	Unmodified	_ELDGLWSFR_					0	0	0		ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;nc|ENSG00000169919|P08236-3|GUSB	ENSG00000169919|ENST00000304895|GUSB	ENSG00000169919|ENST00000304895|GUSB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.3435668945312	2	561.782556	1121.55056	0.13635	7.6602E-05	-3.9323	-0.0022091	-3.796	-0.0021325	561.7802995943964	81.338	0.24969	81.109	80.939	81.188	-0.2289					7	5	2	0	0	0	0.024495	1	9772	9772		19.997	0	1	93319			11702	7990	8086	8103	13132	13132					-0.005354450451022785
ELDKAFNE	8	Unmodified	_ELDKAFNE_					0	0	0			REV__nc|ENSG00000251503|Q8N2Z9-3|CENPS	REV__nc|ENSG00000251503|Q8N2Z9-3|CENPS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.2174987792969	2	483.232364	964.450176	-0.17674	-8.5406E-05	2.1955	0.0010609	2.0188	0.00097554	483.2333538279266	55.044	1.5538	54.813	54.351	55.905	-0.23087					75	43	3	0	0	0	0.027866	1	5977	5977		53.351	0	1	694090	+		11703	26936	8087	8104	13133	13133					-0.033471020987576594
ELDKLSLMR	9	Unmodified	_ELDKLSLMR_					0	0	0			REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.759521484375	2	552.807716	1103.60088	-0.57646	-0.00031867	-3.1315	-0.0017311	-3.708	-0.0020498	552.8059607445944	52.117	0.94973	51.998	51.61	52.56	-0.11875					53	24	3	0	0	0	0.024477	1	5404	5404		14.865	0	1	1274900	+		11704	19138	8088	8105	13134	13134					0.05322341288410826
ELDKVAQIL	9	Unmodified	_ELDKVAQIL_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8171997070312	2	514.802957	1027.59136	-0.4152	-0.00021375	0.35861	0.00018461	-0.056591	-2.9133E-05	514.8027667291321	72.777	0.9449	72.777	72.454	73.399	0					53	23	3	0	0	0	0.024323	1	8830	8830		44.117	9.9443	1	877620			11705	8154	8089	8106	13135	13135					0.0786689627452688
ELDLDINVL	9	Unmodified	_ELDLDINVL_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3018188476562	2	522.284597	1042.55464	-0.49158	-0.00025674	-4.3378	-0.0022656	-4.8294	-0.0025223	522.2823526085336	61.159	0.34074	60.946	60.719	61.06	-0.21339					12	8	2	0	0	0	0.024354	1	7021	7021		47.916	0	1	166060	+		11706	21255	8090	8107	13136	13136					0.035065996579760395
ELDLLFRR	8	Unmodified	_ELDLLFRR_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7966918945312	2	531.308741	1060.60293	-0.65995	-0.00035064	-1.7687	-0.00093975	-2.4287	-0.0012904	531.3073787679164	94.162	1.6741	94.168	93.811	95.485	0.0059814					68	39	3	0	0	0	0.027866	1	11867	11867		15.642	0	1	147570	+		11707	24972	8091	8108	13137	13137					0.07505138088527019
ELDLRFIID	9	Unmodified	_ELDLRFIID_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.3110961914062	2	567.313689	1132.61282	1.0358	0.00058763	0.91239	0.00051761	1.9482	0.0011052	567.8157171328988	59.32	1.5643	59.12	58.449	60.014	-0.20016					92	42	3	0	0	0	0.022832	1	6662	6662		82.241	2.5279	1	586290			11708	18072	8092	8109	13138	13138					0.05182281303223135
ELDLVNTTL	9	Unmodified	_ELDLVNTTL_					0	0	0		NELL1|p.S692Kfs*21|1|0.39|ENSG00000165973|chr11:21570855-21570856|-/A|frameshift_variant;nc|ENSG00000165973|Q92832-2|NELL1;ENSG00000165973|ENST00000357134|NELL1	NELL1|p.S692Kfs*21|1|0.39|ENSG00000165973|chr11:21570855-21570856|-/A|frameshift_variant	NELL1|p.S692Kfs*21|1|0.39|ENSG00000165973|chr11:21570855-21570856|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80291748046875	2	509.276772	1016.53899	0.19535	9.9487E-05	1.0079	0.00051331	1.2033	0.0006128	509.2774929577539	36.899	0.35712	36.706	36.455	36.812	-0.193					12	8	2	0	0	0	0.017396	1	2938	2938		125.81	14.166	1	67181			11709	7492	8093	8110	13139	13139					0.031383131409029374
ELDMPLTRSR	10	Unmodified	_ELDMPLTRSR_					0	0	0		ENST00000497613.2_1_8:145658938-145666334:-|nuORF;ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.56829833984375	3	406.548412	1216.62341	1.3011	0.00052894	-3.5937	-0.001461	-2.2927	-0.00093209	406.5467559348134	41.911	0.50539	41.911	41.615	42.12	0					36	14	3	0	0	0	0.03519	1	3845	3845		28.577	5.054	1	479100			11710	6851	8094	8111	13140	13140					0.023759406859880983
ELDPATYK	8	Unmodified	_ELDPATYK_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7899169921875	2	468.737283	935.460012	-0.32813	-0.00015381	-1.5781	-0.00073971	-1.9062	-0.00089351	468.7365058016972	26.884	0.44996	26.965	26.758	27.208	0.081293					19	11	2	0	0	0	0.027866	1	1362	1362		24.203	1.1603	1	204420			11711	2344	8095	8112	13141	13141					-0.010299140933739181
ELDPDNALL	9	Unmodified	_ELDPDNALL_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.2533264160156	2	500.253297	998.492041	-0.091511	-4.5779E-05	0.33623	0.0001682	0.24472	0.00012242	500.2533843971611	95.751	0.853	95.751	95.222	96.075	0					44	15	4	0	0	0	0.35646	1	12196	12196		68.787	7.8149	1	658160			11712	5054	8096	8113	13142	13142					-0.007265464102374608
ELDPDNALL	9	Unmodified	_ELDPDNALL_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2535095214844	2	500.253297	998.492041	0.69733	0.00034884	-0.4017	-0.00020095	0.29563	0.00014789	500.25297485899	95.796	0.759	95.798	95.395	96.154	0.0020676					48	17	4	0	0	0	0.20967	1	12128	12128		87.754	16.459	1	614040			11713	5054	8096	8113	13143	13143					-0.007265464102374608
ELDPDNALL	9	Unmodified	_ELDPDNALL_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.253297	998.492041	0.23518	0.00011765	0.33347	0.00016682	0.56866	0.00028447	500.2535272388617	95.929	0.5899	95.792	95.552	96.142	-0.13689	-0.016763	0.0003263	NaN	87.754	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195510			11714	5054	8096	8113							-0.007265464102374608
ELDPDNALL	9	Unmodified	_ELDPDNALL_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.253297	998.492041	0.66935	0.00033485	-0.24272	-0.00012142	0.42663	0.00021342	500.2532605385638	96	0.55456	95.877	95.553	96.108	-0.12305	0.068028	-0.00025019	NaN	87.754	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200690			11715	5054	8096	8113							-0.007265464102374608
ELDPDNALL	9	Unmodified	_ELDPDNALL_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.253297	998.492041	-0.61072	-0.00030551	1.0888	0.00054469	0.4781	0.00023917	500.2537667010585	96.046	0.55266	95.889	95.62	96.173	-0.15646	0.080378	0.001082	NaN	87.754	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190020			11716	5054	8096	8113							-0.007265464102374608
ELDPDVGHL	9	Unmodified	_ELDPDVGHL_					0	0	0		ENST00000517734.5_1_19:15784518-15794591:+|nuORF	ENST00000517734.5_1_19:15784518-15794591:+|nuORF	ENST00000517734.5_1_19:15784518-15794591:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.3343811035156	2	497.745639	993.476725	-0.48897	-0.00024338	-2.955	-0.0014708	-3.444	-0.0017142	497.742056820575	74.407	0.34059	74.417	74.224	74.565	0.0096512					9	7	2	0	0	0	0.024294	1	9012	9012		29.15	4.9468	1	42470			11717	15917	8097	8114	13144	13144					-0.020274132074177942
ELDPEELSL	9	Unmodified	_ELDPEELSL_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	522.758412	1043.50227	0.2319	0.00012123	-1.0388	-0.00054306	-0.80695	-0.00042184	522.7584091305963	68.418	0.64612	68.437	68.08	68.726	0.018913					27	16	2	0	0	0	0.024323	1	8115	8115		44.117	0	1	302010	+		11718	28494	8098	8115	13145	13145					-0.017739834756412165
ELDPHVDK	8	Unmodified	_ELDPHVDK_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7924499511719	2	476.740357	951.46616	0.54651	0.00026054	-0.61771	-0.00029449	-0.0712	-3.3944E-05	476.739841528389	56.808	0.72557	56.808	56.277	57.003	0					26	20	2	0	0	0	0.027866	1	6280	6280		40.778	0	1	210890	+		11719	23401	8099	8116	13146	13146					-0.011513958618593279
ELDPQSRAAP	10	Unmodified	_ELDPQSRAAP_					0	0	0		ENST00000312734.8_1_2:27333827-27341872:-|nuORF	ENST00000312734.8_1_2:27333827-27341872:-|nuORF	ENST00000312734.8_1_2:27333827-27341872:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2443237304688	2	542.275095	1082.53564	-0.12917	-7.0046E-05	2.2703	0.0012311	2.1411	0.0011611	542.7797978199338	67.868	0.1634	67.634	67.513	67.676	-0.23376					5	3	2	0	0	0	0.03519	1	7817	7817		44.377	14.059	1	38243			11720	12092	8100	8117	13147	13147					-0.0023293691308481357
ELDPVLRVG	9	Unmodified	_ELDPVLRVG_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.2740173339844	2	499.287474	996.560395	-0.22022	-0.00010995	0.4335	0.00021644	0.21328	0.00010649	499.2874503591807	73.343	1.5706	73.066	72.154	73.724	-0.2769					86	37	3	0	0	0	0.024487	1	8585	8585		17.365	0	1	174650	+		11721	25067	8101	8118	13148	13148					0.06197742960284813
ELDSDMVDITQ	11	Unmodified	_ELDSDMVDITQ_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.2375793457031	3	422.523709	1264.5493	0.33797	0.0001428	4.3281	0.0018287	4.666	0.0019715	422.5254438093295	32.701	0.38519	32.764	32.577	32.962	0.062885					14	9	2	0	0	0	0.024759	1	2230	2230		12.957	0	1	26980			11722	3057	8102	8119	13149	13149					-0.07239491986820212
ELDSEGSTSKA	11	Unmodified	_ELDSEGSTSKA_					0	0	0			REV__ENST00000492244.5_1_1:155290368-155290440:+|nuORF	REV__ENST00000492244.5_1_1:155290368-155290440:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.3443603515625	2	562.259308	1122.50406	0.007007	3.9398E-06	-3.8483	-0.0021638	-3.8413	-0.0021598	562.256883705364	88.681	0.33907	88.549	88.401	88.74	-0.13135					10	7	2	0	0	0	0.024741	1	10843	10843		17.468	11.547	1	69632	+		11723	33735	8103	8120	13150	13150					-0.05228974457691038
ELDSLKATV	9	Unmodified	_ELDSLKATV_					0	0	0		nc|ENSG00000284862|Q9UFE4-2|CCDC39;nc|ENSG00000284862|Q9UFE4|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.79461669921875	2	488.27149	974.528426	0.2167	0.00010581	1.4514	0.00070868	1.6681	0.00081449	488.2721938368111	72.441	0.24131	72.441	72.373	72.614	0					8	5	2	0	0	0	0.024025	1	8825	8825		36.447	14.487	1	110680			11724	18811	8104	8121	13151	13151					0.04014330486484141
ELDSSLGTSV	10	Unmodified	_ELDSSLGTSV_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7796936035156	2	504.248212	1006.48187	0.41455	0.00020904	3.6679	0.0018495	4.0824	0.0020586	504.2493803748641	71.219	0.83845	71.013	70.659	71.497	-0.20613					35	19	3	0	0	0	0.03519	1	8299	8299		54.776	0	1	125340			11725	5175	8105	8122	13152	13152					-0.021111541354457586
ELDVLLPT	8	Unmodified	_ELDVLLPT_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7793273925781	2	450.257851	898.501149	-0.20664	-9.3042E-05	1.6696	0.00075176	1.463	0.00065872	450.2566612601723	26.066	0.34497	26.066	25.779	26.124	0					9	7	2	0	0	0	0.027866	1	1268	1268		25.45	10.786	1	18341			11726	1054	8106	8123	13153	13153					0.04783846946088488
ELDVRITAL	9	Unmodified	_ELDVRITAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.298095703125	2	515.300581	1028.58661	-1.2699	-0.00065438	-0.024266	-1.2504E-05	-1.2942	-0.00066688	515.3004118584015	62.261	0.84915	62.261	61.682	62.531	0					40	25	2	0	0	0	0.22902	2	7236	7236;7243		85.161	8.1414	1	5983200			11727	1102	8107	8124	13154;13155	13154					0.07346012131756652
ELDVRITAL	9	Unmodified	_ELDVRITAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2996826171875	2	515.300581	1028.58661	-1.1243	-0.00057934	-0.91274	-0.00047033	-2.037	-0.0010497	515.300031937481	62.489	0.5605	62.249	61.932	62.492	-0.23926					30	17	2	0	0	0	0.31037	1	7235	7235		74.255	5.4682	1	5590100			11728	1102	8107	8124	13156	13156					0.07346012131756652
ELDVRITAL	9	Unmodified	_ELDVRITAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2991943359375	2	515.300581	1028.58661	-1.604	-0.00082652	-0.56436	-0.00029081	-2.1683	-0.0011173	515.3001094362164	62.224	0.61223	62.287	61.912	62.524	0.062767					28	16	2	0	0	0	0.26966	1	7159	7159		79.713	7.8351	1	5638500			11729	1102	8107	8124	13157	13157					0.07346012131756652
ELDVTELFI	9	Unmodified	_ELDVTELFI_					0	0	0			REV__ENST00000505925.1_1_5:107062182-107062734:+|nuORF	REV__ENST00000505925.1_1_5:107062182-107062734:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.789794921875	2	539.786973	1077.55939	-1.3478	-0.00072753	2.6096	0.0014086	1.2618	0.00068111	539.7883763201737	83.005	1.4149	83.032	82.617	84.032	0.026558					45	32	2	0	0	0	0.31247	1	10286	10286		73.975	2.5968	1	179330	+		11730	34017	8108	8125	13158	13158					0.023714838007208527
ELEAAEPAGP	10	Unmodified	_ELEAAEPAGP_					0	0	0			REV__ENSG00000176624|ENST00000406189|MEX3C	REV__ENSG00000176624|ENST00000406189|MEX3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7252502441406	2	492.237647	982.460741	0.62083	0.00030559	-3.3755	-0.0016616	-2.7547	-0.001356	492.23561520060827	71.81	0.33627	71.81	71.68	72.017	0					13	8	3	0	0	0	0.03519	1	8728	8728		42.396	21.449	1	91840	+		11731	27035	8109	8126	13159	13159					-0.03119119444329499
ELEAKAELL	9	Unmodified	_ELEAKAELL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2863464355469	2	508.28714	1014.55973	0.52947	0.00026912	-0.10013	-5.0895E-05	0.42934	0.00021823	508.28695405365755	84.366	0.80762	84.162	83.951	84.759	-0.20329					39	18	3	0	0	0	0.17822	1	10193	10193		93.195	6.2609	1	762900	+		11732	24365	8110	8127	13160	13160					0.05302903520566815
ELEAKAELL	9	Unmodified	_ELEAKAELL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.28714	1014.55973	-0.055296	-2.8106E-05	0.76958	0.00039117	0.71429	0.00036306	508.2871671614662	84.429	0.86882	84.429	84.171	85.04	0	0.15834	0.0010131	NaN	93.195	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307160	+		11733	24365	8110	8127							0.05302903520566815
ELEAKAELL	9	Unmodified	_ELEAKAELL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.28714	1014.55973	-0.79788	-0.00040555	0.93572	0.00047561	0.13784	7.0063E-05	508.28732817265444	84.369	0.87202	84.296	84.134	85.007	-0.072769	0.025224	0.001182	NaN	93.195	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359390	+		11734	24365	8110	8127							0.05302903520566815
ELEAKAELL	9	Unmodified	_ELEAKAELL_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.28714	1014.55973	-0.50197	-0.00025515	0.62361	0.00031697	0.12163	6.1825E-05	508.2872014156814	84.328	0.8746	84.354	84.162	85.037	0.026558	0.083927	0.00086471	NaN	93.195	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424350	+		11735	24365	8110	8127							0.05302903520566815
ELEALHPQL	9	Unmodified	_ELEALHPQL_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2964477539062	2	525.284931	1048.55531	0.13183	6.9249E-05	-3.8732	-0.0020345	-3.7413	-0.0019653	525.7849888075414	28.718	0.33393	28.798	28.533	28.867	0.080812					11	7	2	0	0	0	0.024427	1	1640	1640		34.173	15.91	1	28746			11736	3717	8111	8128	13161	13161					0.03297439097673305
ELEAQEKSR	9	Unmodified	_ELEAQEKSR_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.302001953125	2	545.280377	1088.5462	-1.2206	-0.00066555	-1.3069	-0.00071263	-2.5275	-0.0013782	545.279383327158	63.049	0.18731	63.049	62.938	63.126	0					7	4	2	0	0	0	0.024427	1	7355	7355		26.693	1.1189	1	64862	+		11737	27175	8112	8129	13162	13162					0.005470457413366603
ELEDEEPAP	9	Unmodified	_ELEDEEPAP_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2771606445312	2	514.724569	1027.43459	-0.40832	-0.00021017	-4.2614	-0.0021935	-4.6698	-0.0024036	514.7223009397902	68.482	0.57237	68.482	68.217	68.789	0					19	14	2	0	0	0	0.024323	1	8244	8244		44.117	14.275	1	139050	+		11738	37192	8113	8130	13163	13163					-0.07803433406479598
ELEDGEIDD	9	Unmodified	_ELEDGEIDD_					0	0	0		ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2984008789062	2	517.711659	1033.40876	-0.73424	-0.00038012	2.9835	0.0015446	2.2493	0.0011645	517.7129183802738	38.443	0.45815	38.36	38.149	38.607	-0.082512					17	11	2	0	0	0	0.024523	1	3243	3243		29.15	20.327	1	76347			11739	9700	8114	8131	13164	13164					-0.10660327648747625
ELEDGEIDD	9	Unmodified	_ELEDGEIDD_					0	0	0		ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.711659	1033.40876	-1.1944	-0.00061837	4.6072	0.0023852	3.4128	0.0017669	518.216192477979	38.554	0.43699	38.554	38.284	38.721	0	0.11189	0.00087168	NaN	21.96	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65401			11740	9700	8114	8131							-0.10660327648747625
ELEDGEIDD	9	Unmodified	_ELEDGEIDD_					0	0	0		ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.711659	1033.40876	-2.1067	-0.0010907	5.8638	0.0030358	3.7571	0.0019451	518.21685412641	38.386	0.4893	38.413	38.162	38.651	0.027275	-0.029658	0.0021728	NaN	21.96	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120890			11741	9700	8114	8131							-0.10660327648747625
ELEDTDPMVNP	11	Unmodified	_ELEDTDPMVNP_					0	0	0		nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	nc|ENSG00000175224|O75143-4|ATG13	nc|ENSG00000175224|O75143-4|ATG13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.2409973144531	3	420.520187	1258.53873	0.22754	9.5685E-05	3.7812	0.0015901	4.0088	0.0016858	420.52171058023305	23.874	0.87137	23.661	23.308	24.179	-0.21268					40	19	3	0	0	0	0.024801	1	1020	1020		12.957	2.3707	1	470080			11742	8543	8115	8132	13165	13165					-0.08019474641241686
ELEDVRQLL	9	Unmodified	_ELEDVRQLL_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4|QRICH2	REV__nc|ENSG00000129646|Q9H0J4|QRICH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.810546875	2	557.808771	1113.60299	-0.14695	-8.1971E-05	3.6768	0.0020509	3.5298	0.001969	557.8106530851431	89.54	0.91441	89.54	89.061	89.975	0					60	21	4	0	0	0	0.27161	1	11302	11302		79.451	7.5735	1	1294500	+		11743	23055	8116	8133	13166	13166					0.05073093297869491
ELEDVVNTN	9	Unmodified	_ELEDVVNTN_					0	0	0			REV__ENST00000560964.1_1_15:83486673-83495202:+|nuORF	REV__ENST00000560964.1_1_15:83486673-83495202:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7897338867188	2	516.745836	1031.47712	-0.56042	-0.00028959	-1.8047	-0.00093256	-2.3651	-0.0012222	516.7445559975587	52.415	0.69959	52.507	52.24	52.939	0.091938					32	17	3	0	0	0	0.024209	1	5520	5520		47.657	0	1	536950	+		11744	25062	8117	8134	13167	13167					-0.03736038278225351
ELEEAPLTV	9	Unmodified	_ELEEAPLTV_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7460021972656	2	500.763497	999.512442	0.099569	4.9861E-05	0.75762	0.00037939	0.85719	0.00042925	500.7633439642157	53.382	0.22384	53.124	53	53.224	-0.25838					7	5	2	0	0	0	0.024381	1	5566	5566		29.15	4.9468	1	78637			11745	18158	8118	8135	13168	13168					0.012666242495697588
ELEEKTKED	9	Unmodified	_ELEEKTKED_					0	0	0			REV__ENST00000462135.1_1_7:73118646-73133961:-|nuORF	REV__ENST00000462135.1_1_7:73118646-73133961:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8088989257812	2	560.772051	1119.52955	-0.41986	-0.00023545	1.181	0.00066229	0.76116	0.00042684	560.77239712088	82.368	1.3538	82.368	81.869	83.223	0					47	31	3	0	0	0	0.024323	1	10348	10348		53.351	0	1	395010	+		11746	21595	8119	8136	13169	13169					-0.025434999352683008
ELEEKTKED	9	Unmodified	_ELEEKTKED_					0	0	0			REV__ENST00000462135.1_1_7:73118646-73133961:-|nuORF	REV__ENST00000462135.1_1_7:73118646-73133961:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.772051	1119.52955	-0.47609	-0.00026698	1.3687	0.00076754	0.89264	0.00050057	560.772633705933	82.323	1.1488	82.349	82.023	83.172	0.025711	0.016254	0.00070676	NaN	53.351	43	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419430	+		11747	21595	8119	8136							-0.025434999352683008
ELEELMNKF	9	Unmodified	_ELEELMNKF_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF;ENST00000534027.1_1_11:726604-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.84326171875	2	576.783907	1151.55326	-2.0972	-0.0012096	0.94601	0.00054565	-1.1512	-0.000664	576.7826030054222	91.397	0.21175	91.397	91.256	91.468	0					6	4	2	0	0	0	0.024405	1	11577	11577		20.947	0.95016	1	43393			11748	8709	8120	8137	13170	13170					-0.01645357702432193
ELEELMNKF	9	Unmodified	_ELEELMNKF_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF;ENST00000534027.1_1_11:726604-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	576.783907	1151.55326	-0.1411	-8.1387E-05	-2.4479	-0.0014119	-2.5891	-0.0014933	576.7825840485599	90.308	1.0694	90.292	89.919	90.989	-0.016716					51	25	3	0	0	0	0.024405	1	11464	11464		35.618	0	1	179020			11749	8709	8120	8137	13171	13171					-0.01645357702432193
ELEELMNKF	9	Unmodified	_ELEELMNKF_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF;ENST00000534027.1_1_11:726604-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.8426513671875	2	576.783907	1151.55326	-0.20587	-0.00011874	-3.1351	-0.0018083	-3.341	-0.001927	576.7819866475703	89.493	0.79091	89.508	89.215	90.006	0.015907					40	18	3	0	0	0	0.024457	1	11180	11180		37.159	12.64	1	312900			11750	8709	8120	8137	13172	13172					-0.01645357702432193
ELEETRDL	8	Unmodified	_ELEETRDL_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.30804443359375	2	502.748379	1003.4822	-0.095799	-4.8163E-05	1.7117	0.00086057	1.6159	0.00081241	502.74907906979234	65.344	0.51357	65.381	65.081	65.594	0.037384					24	14	2	0	0	0	0.027866	1	7629	7629		31.955	0	1	169550			11751	8782	8121	8138	13173	13173					-0.019397344156232066
ELEGLILARF	10	Unmodified	_ELEGLILARF_					0	0	0			REV__ENSG00000184232|ENST00000328965|OAF	REV__ENSG00000184232|ENST00000328965|OAF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.277099609375	2	580.837331	1159.66011	-0.10166	-5.9046E-05	-1.9703	-0.0011444	-2.072	-0.0012035	580.8371996907748	86.419	0.47937	86.277	86.103	86.582	-0.14217					15	10	2	0	0	0	0.03519	1	10511	10511		32.812	13.709	1	49594	+		11752	27650	8122	8139	13174	13174					0.0866656057421551
ELEGNGEHPE	10	Unmodified	_ELEGNGEHPE_					0	0	0		ENSG00000256525|ENST00000539111|POLG2;ENST00000585141.5_1_17:62481823-62493086:-|nuORF	ENSG00000256525|ENST00000539111|POLG2	ENSG00000256525|ENST00000539111|POLG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7686157226562	2	555.738542	1109.46253	-0.78545	-0.0004365	2.6925	0.0014963	1.9071	0.0010598	555.740973797165	38.254	0.39188	38.035	37.861	38.253	-0.21849					17	11	2	0	0	0	0.03519	1	3142	3142		25.574	0	1	211340			11753	10909	8123	8140	13175	13175					-0.08782110426363943
ELEGRVPQIPF	11	Unmodified	_ELEGRVPQIPF_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.73797607421875	3	428.903072	1283.68739	-0.17952	-7.6997E-05	1.3377	0.00057373	1.1581	0.00049673	428.9034104709944	39.351	0.81966	39.187	38.795	39.614	-0.16458					56	21	4	0	0	0	0.024759	1	3390	3390		29.551	16.043	1	236590			11754	3595	8124	8141	13176	13176					0.05689044114592434
ELEGRVPQIPF	11	Unmodified	_ELEGRVPQIPF_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.7383728027344	3	428.903072	1283.68739	-0.16093	-6.9024E-05	1.8144	0.0007782	1.6535	0.00070918	428.9036360578268	39.438	0.80715	39.214	38.891	39.698	-0.22311					46	20	3	0	0	0	0.024743	1	3401	3401		51.528	26.46	1	279650			11755	3595	8124	8141	13177	13177					0.05689044114592434
ELEHSRYAKE	10	Unmodified	_ELEHSRYAKE_					0	0	0		ENSG00000160072|ENST00000673477|ATAD3B	ENSG00000160072|ENST00000673477|ATAD3B	ENSG00000160072|ENST00000673477|ATAD3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	631.3269653320312	2	631.312209	1260.60986	-0.75121	-0.00047425	-0.79811	-0.00050385	-1.5493	-0.0009781	631.3116385207484	56.802	0.46006	56.634	56.363	56.823	-0.1672					18	11	2	0	0	0	0.03519	1	6139	6139		18.262	0	1	373360			11756	6778	8125	8142	13178	13178					-0.010015938215929054
ELEHTRGKDD	10	Unmodified	_ELEHTRGKDD_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	601.2774658203125	2	600.286191	1198.55783	-1.3643	-0.00081896	4.4239	0.0026556	3.0597	0.0018367	600.2885956588322	84.247	0.50682	84.174	83.961	84.468	-0.072769					24	11	3	0	0	0	0.03519	1	10553	10553		69.628	6.3214	1	162310	+		11757	21336	8126	8143	13179	13179					-0.033507572353073556
ELEINKDGD	9	Unmodified	_ELEINKDGD_					0	0	0		ENSG00000188219|ENST00000683005|POTEE	ENSG00000188219|ENST00000683005|POTEE	ENSG00000188219|ENST00000683005|POTEE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2915649414062	2	516.745836	1031.47712	0.89232	0.0004611	-2.9065	-0.0015019	-2.0142	-0.0010408	516.7439486971219	54.585	0.36721	54.379	54.318	54.685	-0.20613					11	9	2	0	0	0	0.024283	1	5821	5821		56.434	30.86	1	137960			11758	9702	8127	8144	13180	13180					-0.03736038278225351
ELEINKDGD	9	Unmodified	_ELEINKDGD_					0	0	0		ENSG00000188219|ENST00000683005|POTEE	ENSG00000188219|ENST00000683005|POTEE	ENSG00000188219|ENST00000683005|POTEE	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.745836	1031.47712	-0.49074	-0.00025359	-2.8227	-0.0014586	-3.3135	-0.0017122	516.744120149636	54.514	1.304	54.612	54.294	55.598	0.098015	0.1164	1.5431E-05	NaN	56.434	50	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203910			11759	9702	8127	8144							-0.03736038278225351
ELEKAKRKLD	10	Unmodified	_ELEKAKRKLD_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;ENST00000465458.1_1_17:8409499-8413222:-|nuORF	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.2120666503906	3	410.578588	1228.71394	0.13773	5.6548E-05	2.8268	0.0011606	2.9645	0.0012172	410.57977469522945	46.877	0.55007	46.78	46.572	47.122	-0.096649					32	14	3	0	0	0	0.03519	1	4530	4530		42.338	0	1	305070			11760	4670	8128	8145	13181	13181					0.10872733005953705
ELEKKLTQV	9	Unmodified	_ELEKKLTQV_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;nc|ENSG00000118557|Q8TBY8-4|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8214111328125	2	544.321514	1086.62847	-0.065552	-3.5681E-05	2.2231	0.0012101	2.1575	0.0011744	544.3217050611704	64.395	0.87703	64.395	63.701	64.578	0					31	23	3	0	0	0	0.024367	1	7477	7477		36.447	4.9169	1	1266600			11761	3692	8129	8146	13182	13182					0.08862567820256118
ELEKKLTQV	9	Unmodified	_ELEKKLTQV_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;nc|ENSG00000118557|Q8TBY8-4|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.321514	1086.62847	-0.29984	-0.00016321	3.2642	0.0017768	2.9644	0.0016136	544.3219706421781	64.377	0.48948	64.423	64.153	64.642	0.045502	0.013792	0.00055272	NaN	44.377	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158100			11762	3692	8129	8146							0.08862567820256118
ELEKLEKN	8	Unmodified	_ELEKLEKN_					0	0	0		nc|ENSG00000152240|Q96CS2-2|HAUS1;ENSG00000152240|ENST00000282058|HAUS1	nc|ENSG00000152240|Q96CS2-2|HAUS1	nc|ENSG00000152240|Q96CS2-2|HAUS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2879638671875	2	501.776939	1001.53933	0.35938	0.00018033	0.98152	0.0004925	1.3409	0.00067283	501.77676366108454	72.009	0.487	71.721	71.313	71.8	-0.28858					31	12	4	0	0	0	0.027866	1	8645	8645		44.117	3.3386	1	2002600			11763	6259	8130	8147	13183	13183					0.03861732860775646
ELEKLFINN	9	Unmodified	_ELEKLFINN_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO;REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3070068359375	2	560.305864	1118.59717	-0.43983	-0.00024644	0.63584	0.00035627	0.19601	0.00010982	560.3060749813912	73.416	0.51573	73.416	73.182	73.698	0					35	13	4	0	0	0	0.53979	1	8982	8982		56.721	3.3696	1	1482500	+		11764	25290;20078	8131	8148	13184	13184					0.04261994786179457
ELEKQKGMM	9	Unmodified	_ELEKQKGMM_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8137817382812	2	547.272652	1092.53075	-1.1689	-0.00063971	-2.8885	-0.0015808	-4.0574	-0.0022205	547.2697816828426	56.648	0.68654	56.484	56.058	56.745	-0.16431					49	18	4	0	0	0	0.024436	1	6305	6305		38.806	7.2763	1	432870			11765	4041;18240	8132	8149	13185	13185					-0.01181280371702087
ELEKSSSKQ	9	Unmodified	_ELEKSSSKQ_					0	0	0			REV__ENST00000229922.6_1_6:17556699-17556801:+|nuORF	REV__ENST00000229922.6_1_6:17556699-17556801:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.27001953125	2	518.269478	1034.5244	-0.78737	-0.00040807	1.728	0.00089556	0.9406	0.00048748	518.2701968628271	25.722	0.66448	25.495	25.148	25.812	-0.22683					45	15	4	0	0	0	0.87448	1	1242	1242		34.173	1.3601	1	1837700	+		11766	29404	8133	8150	13186	13186					0.008522409927763874
ELELGGGYSL	10	Unmodified	_ELELGGGYSL_					0	0	0		ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.26171875	2	519.261122	1036.50769	-0.35608	-0.0001849	1.4205	0.00073759	1.0644	0.00055269	519.2616691666873	56.25	1.5464	56.034	55.709	57.255	-0.21551					85	40	3	0	0	0	0.85955	1	6084	6084		56.721	12.19	1	1648800			11767	10098	8134	8151	13187	13187					-0.009102598931804096
ELELNAEQT	9	Unmodified	_ELELNAEQT_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000393501.5_1_3:124103736-124207203:+|nuORF	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7716064453125	2	523.753661	1045.49277	-0.3737	-0.00019573	-0.97921	-0.00051286	-1.3529	-0.00070859	523.7529662573066	72.833	0.42163	72.635	72.289	72.71	-0.19811					13	9	2	0	0	0	0.024374	1	8525	8525		32.812	9.7699	1	101340			11768	6785	8135	8152	13188	13188					-0.02815751761181673
ELELRVSED	9	Unmodified	_ELELRVSED_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2753295898438	2	545.274761	1088.53497	-0.48422	-0.00026403	-0.41899	-0.00022847	-0.90322	-0.0004925	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.51687	1	9795	9795		58.23	10.573	1	63206000			11769	10806	8136	8153	13189	13189					-0.005757763527981297
ELELSILKI	9	Unmodified	_ELELSILKI_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.7997436523438	2	529.328808	1056.64306	-1.4476	-0.00076627	1.5506	0.00082078	0.10297	5.4503E-05	529.3295303278134	83.714	0.47498	83.714	83.435	83.91	0					16	10	2	0	0	0	0.024397	1	10442	10442		39.253	0	1	106650			11770	3729	8137	8154	13190	13190					0.11700639968421456
ELELVPAH	8	Unmodified	_ELELVPAH_					0	0	0			REV__nc|ENSG00000112186|P40123-2|CAP2	REV__nc|ENSG00000112186|P40123-2|CAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.2637939453125	2	454.247818	906.481082	0.53408	0.0002426	3.7635	0.0017096	4.2976	0.0019522	454.2495255563807	21.551	0.33352	21.374	21.209	21.543	-0.17721					12	6	2	0	0	0	0.027866	1	676	676		25.45	19.138	1	54926	+		11771	21975	8138	8155	13191	13191					0.024100960061332444
ELELVRLVPL	10	Unmodified	_ELELVRLVPL_					0	0	0			REV__ENST00000591571.5_1_17:74722944-74729072:+|nuORF	REV__ENST00000591571.5_1_17:74722944-74729072:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.8663940429688	2	590.868631	1179.72271	-0.98145	-0.00057991	-2.8312	-0.0016728	-3.8126	-0.0022528	590.8671327626686	102.25	1.0723	102.25	101.94	103.01	0.0073471					79	25	6	0	0	0	0.96965	1	13071	13071		49.442	1.7842	1	5209500	+		11772	35726	8139	8156	13192	13192					0.14003706642415636
ELELVRLVPL	10	Unmodified	_ELELVRLVPL_					0	0	0			REV__ENST00000591571.5_1_17:74722944-74729072:+|nuORF	REV__ENST00000591571.5_1_17:74722944-74729072:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.8662719726562	2	590.868631	1179.72271	0.62197	0.0003675	-4.1349	-0.0024432	-3.513	-0.0020757	590.8660983357469	102.35	1.1233	102.34	102.02	103.14	-0.0054474					67	26	5	0	0	0	0.96965	2	13019	13019;13031		49.442	5.0644	1	6109300	+		11773	35726	8139	8156	13193;13194	13193					0.14003706642415636
ELELVRLVPL	10	Unmodified	_ELELVRLVPL_					0	0	0			REV__ENST00000591571.5_1_17:74722944-74729072:+|nuORF	REV__ENST00000591571.5_1_17:74722944-74729072:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.866455078125	2	590.868631	1179.72271	-0.15177	-8.9679E-05	-3.2769	-0.0019362	-3.4287	-0.0020259	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931					85	41	5	0	0	0	1.0142	1	12707	12707		44.117	8.4985	1	5173900	+		11774	35726	8139	8156	13195	13195					0.14003706642415636
ELEMDLESLEA	11	Oxidation (M)	_ELEM(Oxidation (M))DLESLEA_		ELEM(1)DLESLEA		ELEM(48)DLESLEA	0	0	1		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A;ENST00000546105.5_1_17:27401790-27418677:-|nuORF	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.7857666015625	2	647.789583	1293.56461	-2.578	-0.00167	-3.3235	-0.002153	-5.9016	-0.003823	647.7874111224119	52.635	1.0188	52.508	52.234	53.253	-0.12705					74	25	5	0	0	0	0.95124	1	5477	5477		47.657	7.5992	1	3787200			11775	9889	8140	8157	13196	13196		407			-0.07042625189637874
ELEMNMGGP	9	Unmodified	_ELEMNMGGP_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2;ENST00000522054.1_1_8:71050436-71053428:-|nuORF	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7538146972656	2	489.206978	976.399403	1.1483	0.00056174	3.1728	0.0015521	4.321	0.0021139	489.20835489627007	51.631	0.34016	51.447	51.258	51.598	-0.18404					14	8	2	0	0	0	0.023417	1	5287	5287		49.442	0	1	82316			11776	5408	8141	8158	13197	13197					-0.0897409073960489
ELEMQLLLA	9	Unmodified	_ELEMQLLLA_					0	0	0		ENSG00000135929|ENST00000258415|CYP27A1	ENSG00000135929|ENST00000258415|CYP27A1	ENSG00000135929|ENST00000258415|CYP27A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3042602539062	2	530.291368	1058.56818	-1.0426	-0.00055288	4.1138	0.0021815	3.0712	0.0016286	530.2937969215907	31.752	0.44013	31.752	31.509	31.949	0					18	10	2	0	0	0	0.024457	1	2133	2133		29.15	1.2673	1	84087			11777	4955	8142	8159	13198	13198					0.04124134165567739
ELENLQASY	9	Unmodified	_ELENLQASY_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant;PCNT|p.E641Kfs*58|1|0.13|ENSG00000160299|chr21:46355609-46355610|-/AAAGGTGT|frameshift_variant	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7564086914062	2	533.756204	1065.49785	-0.52429	-0.00027984	0.54898	0.00029302	0.024695	1.3181E-05	533.7564215659442	58.897	1.1568	58.71	58.39	59.547	-0.18795					83	28	5	0	0	0	0.5973	1	6518	6518		52.937	0.63753	1	6308300			11778	6803	8143	8160	13199	13199					-0.03227447898552782
ELEPNDLDL	9	Unmodified	_ELEPNDLDL_					0	0	0			REV__ENSG00000073598|ENST00000158009|FNDC8	REV__ENSG00000073598|ENST00000158009|FNDC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7972412109375	2	529.256037	1056.49752	-0.37713	-0.0001996	-2.3915	-0.0012657	-2.7686	-0.0014653	529.2541706885822	54.675	0.30154	54.525	54.375	54.676	-0.15036					12	8	2	0	0	0	0.024344	1	5963	5963		54.776	20.604	1	127700	+		11779	20502	8144	8161	13200	13200					-0.02846867618404758
ELEQLCETV	9	Unmodified	_ELEQLCETV_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.8057861328125	2	532.25244	1062.49033	-0.77797	-0.00041408	2.4259	0.0012912	1.648	0.00087713	532.2535997044064	67.234	1.1925	67.01	66.778	67.97	-0.22374					55	28	3	0	0	0	0.024506	1	7710	7710		6.3127	0	1	1073200	+		11780	23795	8145	8162	13201	13201					-0.03841923490517729
ELEQRRRTE	9	Unmodified	_ELEQRRRTE_					0	0	0			REV__TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	REV__TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.8768005371094	3	406.217942	1215.632	0.22288	9.0538E-05	1.0112	0.00041076	1.2341	0.0005013	406.5527481386094	50.174	0.52895	49.994	49.788	50.317	-0.18071					18	13	2	0	0	0	0.024447	1	5046	5046		20.03	0	1	295250	+		11781	25258	8146	8163	13202	13202					0.03280630646872851
ELERDIVEK	9	Unmodified	_ELERDIVEK_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8068237304688	2	565.806228	1129.5979	-0.12358	-6.9923E-05	1.0256	0.00058031	0.90204	0.00051038	565.8067921366278	32.713	0.77724	32.476	32.173	32.95	-0.23666					33	18	2	0	0	0	0.59099	1	2270	2270		53.351	7.3792	1	2965200	+		11782	28466	8147	8164	13203	13203					0.038287894352379226
ELERLALW	8	Unmodified	_ELERLALW_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2696533203125	2	515.290017	1028.56548	-0.41524	-0.00021397	3.4027	0.0017534	2.9875	0.0015394	515.792493768683	51.227	0.46929	51.077	50.792	51.261	-0.14916					22	12	3	0	0	0	0.027866	1	5383	5383		42.474	0	1	726970			11783	8901;16105	8148	8165	13204	13204					0.05234046822897653
ELERLKPS	8	Unmodified	_ELERLKPS_					0	0	0			REV__ENST00000246957.9_1_16:3726078-3727601:-|nuORF	REV__ENST00000246957.9_1_16:3726078-3727601:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2690734863281	2	486.279649	970.544745	-0.96033	-0.00046699	0.55333	0.00026907	-0.407	-0.00019792	486.27976025367497	53.542	0.63781	53.637	53.3	53.938	0.095669					26	17	2	0	0	0	0.027866	1	5711	5711		31.955	0	1	1109500	+		11784	29478	8149	8166	13205	13205					0.058294564432458174
ELERTIHY	8	Unmodified	_ELERTIHY_					0	0	0		ENST00000435712.1_1_10:131904549-131906742:+|nuORF	ENST00000435712.1_1_10:131904549-131906742:+|nuORF	ENST00000435712.1_1_10:131904549-131906742:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3003540039062	2	530.774731	1059.53491	-0.16354	-8.6805E-05	-0.13562	-7.1985E-05	-0.29917	-0.00015879	531.2759316033419	38.844	0.41637	38.618	38.32	38.736	-0.2257					14	10	2	0	0	0	0.027866	1	3219	3219		19.36	0	1	233390			11785	14266	8150	8167	13206	13206					0.0075226843787277176
ELESLIANL	9	Unmodified	_ELESLIANL_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;ENST00000478064.1_1_1:183097743-183097896:+|nuORF	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.80584716796875	2	501.279315	1000.54408	0.31529	0.00015805	0.63152	0.00031657	0.9468	0.00047461	501.2792976685329	42.151	0.4656	42.151	41.856	42.322	0					27	13	3	0	0	0	0.022756	1	3867	3867		68.787	2.3575	1	221120			11786	4943	8151	8168	13207	13207					0.04382617003534506
ELESLIANL	9	Unmodified	_ELESLIANL_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;ENST00000478064.1_1_1:183097743-183097896:+|nuORF	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.279315	1000.54408	-0.65407	-0.00032787	-0.1363	-6.8324E-05	-0.79037	-0.00039619	501.2795957382272	42.554	0.65592	42.324	41.9	42.556	-0.22903	0.095682	-0.0006561	NaN	68.787	54	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	766420			11787	4943	8151	8168							0.04382617003534506
ELESVRRQLRR	11	Unmodified	_ELESVRRQLRR_					0	0	0			REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	REV__ENST00000572240.5_1_16:3078109-3079857:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2831726074219	3	481.283057	1440.82734	0.87515	0.00042119	0.1689	8.129E-05	1.0441	0.00050248	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.0563	2	12526	12526;12540		23.378	5.5448	1	1033300	+		11788	25415	8152	8169	13208;13209	13208					0.1245622117169205
ELEVGGQRG	9	Unmodified	_ELEVGGQRG_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH;ENST00000588559.5_1_19:55705613-55720813:-|nuORF	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.9715881347656	2	472.743431	943.472308	0.1078	5.0961E-05	4.1454	0.0019597	4.2532	0.0020107	472.7451820500403	49.58	0.31074	49.3	49.086	49.397	-0.27977					13	7	2	0	0	0	0.024381	1	4978	4978		21.96	3.6355	1	235750			11789	1681	8153	8170	13210	13210					-0.0016887763031263603
ELEVQYQG	8	Unmodified	_ELEVQYQG_					0	0	0		nc|ENSG00000134363|P19883-2|FST;ENSG00000134363|ENST00000256759|FST	nc|ENSG00000134363|P19883-2|FST	nc|ENSG00000134363|P19883-2|FST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.6460876464844	2	483.232364	964.450176	0.30907	0.00014935	0.83586	0.00040391	1.1449	0.00055327	483.2325182232052	48.3	0.61894	48.113	47.749	48.368	-0.18684					32	16	3	0	0	0	0.027866	1	4776	4776		18.324	0	1	355730			11790	4789	8154	8171	13211	13211					-0.03347102098746291
ELEVVLQPE	9	Unmodified	_ELEVVLQPE_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11;ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3118896484375	2	528.284597	1054.55464	-0.93691	-0.00049495	2.9007	0.0015324	1.9638	0.0010375	528.2864349188184	36.422	0.48189	36.379	36.208	36.69	-0.042458					22	12	2	0	0	0	0.024405	1	2920	2920		35.618	18.253	1	165660			11791	1339	8155	8172	13212	13212					0.029545996579372513
ELEWSSLTGF	10	Unmodified	_ELEWSSLTGF_					0	0	0			REV__ENSG00000175197|ENST00000346473|DDIT3	REV__ENSG00000175197|ENST00000346473|DDIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.7786865234375	2	584.779679	1167.5448	-0.32916	-0.00019249	-2.5554	-0.0014944	-2.8846	-0.0016868	584.7781325273284	42.63	1.2406	42.507	41.82	43.061	-0.12299					55	32	2	0	0	0	0.67706	2	3859	3859;3870		68.787	9.9955	1	3264300	+		11792	26925	8156	8173	13213;13214	13213					-0.0322658834743379
ELEWSSLTGF	10	Unmodified	_ELEWSSLTGF_					0	0	0			REV__ENSG00000175197|ENST00000346473|DDIT3	REV__ENSG00000175197|ENST00000346473|DDIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.7785034179688	2	584.779679	1167.5448	-1.0917	-0.0006384	-1.9551	-0.0011433	-3.0468	-0.0017817	584.7785079478465	42.808	1.2819	42.57	41.965	43.247	-0.23736					56	33	2	0	0	0	0.65054	1	3882	3882		71.296	5.8303	1	3046800	+		11793	26925	8156	8173	13215	13215					-0.0322658834743379
ELEYIVSV	8	Unmodified	_ELEYIVSV_					0	0	0		nc|ENSG00000029153|Q8WYA1-9|BMAL2;chr12:27333136-27368262|479|10.58|0.54|4.3|+|ENST00000546179|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;chr12:27368412-27376346|486|13.31|0.4|5.05|+|ENST00000544915|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.260009765625	2	476.255308	950.496064	-0.74157	-0.00035317	1.9964	0.00095078	1.2548	0.0005976	476.25598165749517	43.56	0.81254	43.322	43.024	43.836	-0.23736					31	21	2	0	0	0	0.027866	1	3993	3993		25.45	0	1	111720			11794	318	8157	8174	13216	13216					0.018835430834883482
ELFAPYTKSP	10	Unmodified	_ELFAPYTKSP_					0	0	0			REV__ENSG00000171621|ENST00000328089|SPSB1	REV__ENSG00000171621|ENST00000328089|SPSB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.842529296875	2	576.800414	1151.58628	-0.81507	-0.00047013	1.1886	0.00068556	0.3735	0.00021543	576.8008317813892	89.865	0.46812	89.702	89.429	89.897	-0.1626					21	10	3	0	0	0	0.03519	1	10978	10978		33.922	14.818	1	155110	+		11795	26586	8158	8175	13217	13217					0.01654592411887279
ELFASELLL	9	Unmodified	_ELFASELLL_					0	0	0			REV__ENSG00000123358|ENST00000394825|NR4A1	REV__ENSG00000123358|ENST00000394825|NR4A1	MSMS	OPSCC_40_ClassI_Rep-1	4	517.7940673828125	2	517.792058	1033.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.853	1	99.718	99.218	100.22	-0.13526								0	0	0	0.45465	1	12377	12377		57.811	0	1		+		11796	22690	8159	8176	13218	13218					0.054120915259545654
ELFDAICQVI	10	Unmodified	_ELFDAICQVI_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.7955322265625	2	575.794275	1149.574	1.1849	0.00068228	1.8768	0.0010807	3.0617	0.0017629	575.7950973677013	63.592	1.0469	63.646	63.41	64.457	0.054104					63	28	3	0	0	0	0.57594	1	7359	7359		79.713	2.9384	1	3791700	+		11797	25253	8160	8177	13219	13219					0.00519232677220316
ELFDEAIN	8	Unmodified	_ELFDEAIN_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7764892578125	2	475.726915	949.439277	1.3993	0.00066568	2.3924	0.0011381	3.7916	0.0018038	475.72814955452276	71.689	0.52547	71.689	71.415	71.94	0					16	13	2	0	0	0	0.027866	1	8697	8697		30.504	7.4612	1	145370	+		11798	25043	8161	8178	13220	13220					-0.037465044730538466
ELFDFLTS	8	Unmodified	_ELFDFLTS_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2715148925781	2	486.239658	970.464763	-0.82139	-0.00039939	-3.3906	-0.0016486	-4.2119	-0.002048	486.2378670644257	33.009	0.56518	33.009	32.79	33.356	0					23	14	2	0	0	0	0.027866	1	2323	2323		26.796	0	1	205110	+		11799	20717	8162	8179	13221	13221					-0.021650299506063675
ELFDGKTGH	9	Unmodified	_ELFDGKTGH_					0	0	0		ENSG00000101605|ENST00000356443|MYOM1;nc|ENSG00000101605|P52179-2|MYOM1	ENSG00000101605|ENST00000356443|MYOM1	ENSG00000101605|ENST00000356443|MYOM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7798767089844	2	502.245806	1002.47706	0.10058	5.0515E-05	-0.45388	-0.00022796	-0.3533	-0.00017744	502.24565811950197	52.829	0.51774	52.921	52.674	53.191	0.091938					30	13	3	0	0	0	0.024405	1	5645	5645		35.618	0	1	823290			11800	2339	8163	8180	13222	13222					-0.024079934875544495
ELFEIPPD	8	Unmodified	_ELFEIPPD_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7878112792969	2	480.239658	958.464763	-0.15528	-7.4573E-05	0.95847	0.0004603	0.80319	0.00038572	480.23962970686176	22.555	1.1345	22.48	21.56	22.694	-0.075296					35	23	2	0	0	0	0.027866	1	775	775		50.025	20.875	1	47472			11801	809	8164	8181	13223	13223					-0.01613029950613054
ELFELTLHPE	10	Unmodified	_ELFELTLHPE_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.1824645996094	3	409.880044	1226.6183	-0.40096	-0.00016435	1.6305	0.00066831	1.2295	0.00050396	409.88065910488774	25.64	0.83888	25.413	25.148	25.987	-0.22683					32	20	2	0	0	0	0.03519	1	1208	1208		14.694	0	1	157470	+		11802	28219	8165	8182	13224	13224					0.014059600950758977
ELFEQLTNSK	10	Unmodified	_ELFEQLTNSK_					0	0	0			REV__SAMSN1|p.K244N|1|0.16|ENSG00000155307|chr21:14500565-14500565|C/A|missense_variant	REV__SAMSN1|p.K244N|1|0.16|ENSG00000155307|chr21:14500565-14500565|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5920715332031	3	403.543432	1207.60847	-0.12209	-4.9268E-05	-2.8709	-0.0011585	-2.993	-0.0012078	403.5412231826082	38.181	0.64265	38.002	37.739	38.381	-0.17929					38	18	3	0	0	0	0.03519	1	3096	3096		29.551	0	1	288170	+		11803	37457	8166	8183	13225	13225					0.012967720896540413
ELFFLVLM	8	Unmodified	_ELFFLVLM_					0	0	0			REV__ENSG00000118007|ENST00000383202|STAG1;REV__NCK1-STAG1|1|fusion	REV__NCK1-STAG1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.714111328125	2	506.282815	1010.55108	0.04817	2.4387E-05	-3.6352	-0.0018404	-3.587	-0.001816	506.2807016128105	32.091	0.98381	31.854	31.189	32.173	-0.23667					37	23	2	0	0	0	0.027866	1	2101	2101		19.36	0	1	96505	+		11804	22382;37265	8167	8184	13226	13226					0.04622258350411812
ELFHDPVS	8	Unmodified	_ELFHDPVS_					0	0	0			REV__ENSG00000112706|ENST00000369950|IMPG1	REV__ENSG00000112706|ENST00000369950|IMPG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7532958984375	2	472.229625	942.444697	-0.60077	-0.0002837	-2.9023	-0.0013705	-3.503	-0.0016542	472.22796339608726	35.345	0.97938	35.323	34.905	35.884	-0.021767					62	25	3	0	0	0	0.027866	1	2747	2747		19.36	7.1531	1	978350	+		11805	22021	8168	8185	13227	13227					-0.028827808905589336
ELFHLESL	8	Unmodified	_ELFHLESL_					0	0	0		ENST00000527996.5_1_1:109656894-109745573:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.78240966796875	2	494.260925	986.507297	-0.21219	-0.00010488	1.4507	0.000717	1.2385	0.00061213	494.26109085409604	66.475	0.2848	66.193	66.019	66.303	-0.28148					12	7	2	0	0	0	0.027866	1	7861	7861		31.955	0	1	466800			11806	16173	8169	8186	13228	13228					0.01350365177609092
ELFHNQVEF	9	Unmodified	_ELFHNQVEF_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.2691650390625	2	581.780013	1161.54547	-0.37144	-0.0002161	0.52721	0.00030672	0.15577	9.0626E-05	581.779925325584	64.352	1.2845	64.124	63.29	64.575	-0.22792					57	32	3	0	0	0	0.024354	1	7222	7222		38.806	7.2763	1	162880			11807	10919	8170	8187	13229	13229					-0.028837489077204737
ELFHQFVSL	9	Unmodified	_ELFHQFVSL_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.333984375	2	560.295299	1118.57605	-0.60027	-0.00033633	-2.1769	-0.0012197	-2.7772	-0.001556	560.2946949513137	47.803	1.8454	47.65	47.3	49.146	-0.15301					75	53	3	0	0	0	0.024477	1	5026	5026		20.947	4.4738	1	624160			11808	3726	8171	8188	13230	13230					0.02150029477343196
ELFITSKLW	9	Unmodified	_ELFITSKLW_					0	0	0		ENST00000429105.1_1_1:224762276-224762375:+|nuORF	ENST00000429105.1_1_1:224762276-224762375:+|nuORF	ENST00000429105.1_1_1:224762276-224762375:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7740478515625	2	568.82115	1135.62775	-0.20374	-0.00011589	-0.038823	-2.2083E-05	-0.24256	-0.00013798	568.8210475413507	78.27	0.72084	78.016	77.62	78.34	-0.25471					50	16	4	0	0	0	0.024323	1	9307	9307		35.618	0	1	1156000			11809	14138	8172	8189	13231	13231					0.06535773171231085
ELFKALGLHKL	11	Unmodified	_ELFKALGLHKL_					0	0	0		nc|ENSG00000105983|Q8WVP7-3|LMBR1;ENSG00000105983|ENST00000353442|LMBR1	nc|ENSG00000105983|Q8WVP7-3|LMBR1	nc|ENSG00000105983|Q8WVP7-3|LMBR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	635.3827514648438	2	634.889898	1267.76524	0.034627	2.1984E-05	3.9084	0.0024814	3.943	0.0025034	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	1.0075	1	13375	13375		35.152	2.4015	1	2042800			11810	2743	8173	8190	13232	13232					0.14207101770648478
ELFKATCRWL	10	Unmodified	_ELFKATCRWL_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.23773193359375	3	422.893631	1265.65906	0.391	0.00016535	-3.5769	-0.0015127	-3.1859	-0.0013473	422.89174045376404	32.796	0.7567	32.858	32.39	33.147	0.062885					33	19	3	0	0	0	0.03519	1	2242	2242		20.837	0	1	143130			11811	731	8174	8191	13233	13233					0.03686022933698041
ELFLEKFF	8	Unmodified	_ELFLEKFF_					0	0	0		nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-2|FAM135B	nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7763061523438	2	536.789318	1071.56408	-0.46243	-0.00024823	-2.2868	-0.0012275	-2.7492	-0.0014757	536.7881892947144	79.6	0.67117	79.449	79.195	79.866	-0.15051					22	15	2	0	0	0	0.027866	1	9494	9494		37.159	0	1	258310			11812	5992	8175	8192	13234	13234					0.031164127341526182
ELFLILSQS	9	Unmodified	_ELFLILSQS_					0	0	0			REV__ENST00000556973.1_1_14:102198142-102198797:+|nuORF	REV__ENST00000556973.1_1_14:102198142-102198797:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2784423828125	2	525.297507	1048.58046	-0.28187	-0.00014806	-0.79202	-0.00041605	-1.0739	-0.00056411	525.2966348473474	84.638	1.4685	84.663	83.9	85.369	0.025536					79	34	5	0	0	0	0.024405	1	10543	10543		27.882	0	1	1363300	+		11813	35056	8176	8193	13235	13235					0.058114939002507526
ELFLKMLRQ	9	Unmodified	_ELFLKMLRQ_					0	0	0		ENSG00000168152|ENST00000302236|THAP9	ENSG00000168152|ENST00000302236|THAP9	ENSG00000168152|ENST00000302236|THAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3433227539062	2	589.341726	1176.6689	0.92698	0.00054631	0.37938	0.00022358	1.3064	0.00076989	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	0.94809	1	11497	11497		29.15	1.2673	1	4746700			11814	7791	8177	8194	13236	13236					0.08763210939059718
ELFLLLVQVQ	10	Unmodified	_ELFLLLVQVQ_					0	0	0			REV__ENST00000504031.1_1_5:118464934-118469134:+|nuORF	REV__ENST00000504031.1_1_5:118464934-118469134:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8875732421875	3	401.244547	1200.71181	1.7377	0.00069725	4.0535	0.0016265	5.7912	0.0023237	401.2462539897657	30.184	0.41475	30.258	30.087	30.502	0.074314					13	9	2	0	0	0	0.03519	1	1885	1885		25.126	9.7929	1	45582	+		11815	33974	8178	8195	13237	13237					0.11948304268139509
ELFLNMENN	9	Unmodified	_ELFLNMENN_					0	0	0		ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.3242797851562	2	562.258056	1122.50156	-0.89247	-0.0005018	-2.6073	-0.001466	-3.4998	-0.0019678	562.2565162264946	69.107	0.7878	68.845	68.586	69.374	-0.26166					40	18	3	0	0	0	0.024374	1	8049	8049		32.812	0	1	692510			11816	6357	8179	8196	13238	13238					-0.05479101396349506
ELFLQKGFC	9	Unmodified	_ELFLQKGFC_					0	0	0			REV__ENST00000490583.5_1_22:20040979-20049207:+|nuORF	REV__ENST00000490583.5_1_22:20040979-20049207:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.8002319335938	2	542.778428	1083.5423	0.80602	0.00043749	4.0242	0.0021843	4.8303	0.0026218	542.7800396840116	17.736	0.34993	17.582	17.408	17.758	-0.15403					10	6	2	0	0	0	0.024541	1	206	206		32.812	3.6629	1	23012	+		11817	27587	8180	8197	13239	13239					0.00387284713929148
ELFLRRISL	9	Unmodified	_ELFLRRISL_					0	0	0		nc|ENSG00000111361|Q14232-2|EIF2B1;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;ENSG00000111361|ENST00000424014|EIF2B1	nc|ENSG00000111361|Q14232-2|EIF2B1;ENSG00000111361|ENST00000424014|EIF2B1	nc|ENSG00000111361|Q14232-2|EIF2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.8532104492188	2	573.853316	1145.69208	-0.13364	-7.6688E-05	-0.31129	-0.00017863	-0.44492	-0.00025532	573.853028695282	64.073	0.87115	63.845	63.549	64.42	-0.22773					61	21	4	0	0	0	0.62163	1	7258	7258		51.335	7.2187	1	3417800			11818	18169;3112	8181	8198	13240	13240					0.12505973048041596
ELFLRRISL	9	Unmodified	_ELFLRRISL_					0	0	0		nc|ENSG00000111361|Q14232-2|EIF2B1;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;ENSG00000111361|ENST00000424014|EIF2B1	nc|ENSG00000111361|Q14232-2|EIF2B1;ENSG00000111361|ENST00000424014|EIF2B1	nc|ENSG00000111361|Q14232-2|EIF2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.8534545898438	2	573.853316	1145.69208	-0.13944	-8.0016E-05	-0.26725	-0.00015336	-0.40669	-0.00023338	573.8530315715872	64.053	1.0621	63.861	63.565	64.627	-0.19243					66	26	4	0	0	0	0.70186	2	7261	7261;7270		45.952	12.03	1	3511500			11819	18169;3112	8181	8198	13241;13242	13241					0.12505973048041596
ELFLSPIFV	9	Unmodified	_ELFLSPIFV_					0	0	0			REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8001708984375	2	532.804968	1063.59538	-0.68966	-0.00036745	-4.0579	-0.0021621	-4.7475	-0.0025295	532.8024815809384	57.247	0.30202	57.342	57.127	57.429	0.095306					11	7	2	0	0	0	0.024436	1	6331	6331		30.504	0	1	970740	+		11820	24787	8182	8199	13243	13243					0.06612985768242652
ELFNGRNMEGK	11	Unmodified	_ELFNGRNMEGK_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	647.8125	2	647.814061	1293.61357	-0.76603	-0.00049625	-3.2656	-0.0021155	-4.0316	-0.0026117	647.8119789604525	62.913	1.5886	62.654	62.368	63.956	-0.25824					104	43	4	0	0	0	0.79085	1	7095	7095		58.246	10.287	1	11044000	+		11821	21930	8183	8200	13244	13244					-0.021492473193802653
ELFNRVLKV	9	Unmodified	_ELFNRVLKV_					0	0	0			REV__ENST00000435989.6_1_19:58384023-58384878:-|nuORF	REV__ENST00000435989.6_1_19:58384023-58384878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.813720703125	2	559.340041	1116.66553	0.26135	0.00014618	-0.92999	-0.00052018	-0.66864	-0.000374	559.3393243900208	76.333	1.1406	76.345	75.717	76.857	0.011635					61	28	3	0	0	0	0.024261	1	9351	9351		64.207	18.235	1	695090	+		11822	32452	8184	8201	13245	13245					0.11186284156724469
ELFPALILL	9	Unmodified	_ELFPALILL_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7611083984375	2	514.823161	1027.63177	-0.51611	-0.00026571	-2.3493	-0.0012095	-2.8654	-0.0014752	514.8218611630637	70.568	0.70515	70.581	70.347	71.052	0.012413					24	16	3	0	0	0	0.024443	1	8483	8483		35.201	3.6709	1	498120	+		11823	28082	8185	8202	13246	13246					0.11905862664957567
ELFQLLVEV	9	Unmodified	_ELFQLLVEV_					0	0	0			REV__PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	REV__PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.81494140625	2	545.313158	1088.61176	-0.47685	-0.00026003	0.91663	0.00049985	0.43978	0.00023982	545.313591124939	100.7	0.98195	100.7	100.14	101.12	0					50	22	3	0	0	0	0.091713	1	12883	12883		113.41	5.3241	1	893870	+		11824	22423	8186	8203	13247	13247					0.07100066934322058
ELFQVIAR	8	Unmodified	_ELFQVIAR_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.26983642578125	2	488.284734	974.554916	0.48763	0.0002381	-0.31626	-0.00015442	0.17137	8.368E-05	488.2844033732192	59.633	0.44141	59.385	59.13	59.571	-0.24842					17	10	2	0	0	0	0.027866	1	6547	6547		33.516	11.813	1	100610	+		11825	25603	8187	8204	13248	13248					0.06662064168483539
ELFQVIAR	8	Unmodified	_ELFQVIAR_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.284734	974.554916	0.46531	0.0002272	0.28432	0.00013883	0.74963	0.00036603	488.2845366350196	59.516	0.44311	59.318	59.132	59.575	-0.19742	-0.006109	0.00062562	NaN	24.203	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140580	+		11826	25603	8187	8204							0.06662064168483539
ELFRLDSP	8	Unmodified	_ELFRLDSP_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7686767578125	2	488.758549	975.502546	0.42006	0.00020531	-0.15485	-7.5682E-05	0.26521	0.00012962	488.75842554021614	68.14	1.0287	67.904	67.161	68.19	-0.23575					34	24	2	0	0	0	0.027866	1	7802	7802		37.159	0	1	172420			11827	6647	8188	8205	13249	13249					0.013814810348662832
ELFRLISRKKW	11	Unmodified	_ELFRLISRKKW_					0	0	0			REV__ENSG00000085760|ENST00000263629|MTIF2	REV__ENSG00000085760|ENST00000263629|MTIF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3074645996094	3	492.633027	1474.87725	0.095839	4.7214E-05	2.6552	0.001308	2.751	0.0013552	492.96883150488765	101.24	1.1282	101.24	100.78	101.91	0					37	25	2	0	0	0	0.024772	1	12961	12961		14.694	6.2864	1	69810	+		11828	20757	8189	8206	13250	13250					0.1588095584763778
ELFRLISRKKW	11	Unmodified	_ELFRLISRKKW_					0	0	0			REV__ENSG00000085760|ENST00000263629|MTIF2	REV__ENSG00000085760|ENST00000263629|MTIF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	492.633027	1474.87725	0.24786	0.0001221	2.5658	0.001264	2.8136	0.0013861	492.6342403249598	101.45	0.46398	101.28	100.92	101.38	-0.17178	0.034069	-0.00018373	NaN	14.694	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37961	+		11829	20757	8189	8206							0.1588095584763778
ELFRPGTLP	9	Unmodified	_ELFRPGTLP_					0	0	0		LRRC47|p.A177T|1|0.44|ENSG00000130764|chr1:3795948-3795948|C/T|missense_variant	LRRC47|p.A177T|1|0.44|ENSG00000130764|chr1:3795948-3795948|C/T|missense_variant	LRRC47|p.A177T|1|0.44|ENSG00000130764|chr1:3795948-3795948|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2293090820312	2	515.290017	1028.56548	-0.1207	-6.2197E-05	3.1845	0.0016409	3.0638	0.0015787	515.291596401078	61.866	0.88947	61.609	61.008	61.898	-0.25725					31	21	2	0	0	0	0.024511	1	6960	6960		40.778	22.454	1	704270			11830	17927	8190	8207	13251	13251					0.05234046822920391
ELFRTSWT	8	Unmodified	_ELFRTSWT_					0	0	0			REV__NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant	REV__NLGN1|p.Y200Lfs*34|1|0.18|ENSG00000169760|chr3:173807782-173807783|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2619018554688	2	520.263999	1038.51345	-0.83575	-0.00043481	-3.3246	-0.0017297	-4.1603	-0.0021645	520.2621018374414	22.714	1.1494	22.714	22.291	23.441	0					100	25	6	0	0	0	0.80469	1	816	816		58.782	5.4305	1	5519400	+		11831	37284	8191	8208	13252	13252					-0.0042711659086762666
ELFSSSAL	8	Unmodified	_ELFSSSAL_					0	0	0			REV__ENST00000437653.1_1_3:175695464-175695797:-|nuORF	REV__ENST00000437653.1_1_3:175695464-175695797:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.248291015625	2	427.218726	852.422899	1.9054	0.000814	3.682	0.001573	5.5874	0.002387	427.22025312516087	23.257	0.77106	23.066	22.758	23.529	-0.19117					32	17	3	0	0	0	0.027866	1	838	838		35.201	0	1	137560	+		11832	32483	8192	8209	13253	13253					-0.009215856391278976
ELFSVSYSI	9	Unmodified	_ELFSVSYSI_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-2|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-2|TCTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3043212890625	2	522.76604	1043.51753	0.10271	5.3692E-05	0.15085	7.8857E-05	0.25355	0.00013255	523.2691975242535	87.498	0.79592	87.462	86.858	87.654	-0.035355					28	18	2	0	0	0	0.024323	1	10965	10965		27.882	0	1	121940	+		11833	36609	8193	8210	13254	13254					-0.0024907188781071454
ELFTKYFWRLY	11	Unmodified	_ELFTKYFWRLY_					0	0	0		nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS;ENST00000488307.5_1_9:130565203-130570042:+|nuORF	nc|ENSG00000136877|Q05932-3|FPGS	nc|ENSG00000136877|Q05932-3|FPGS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7877197265625	3	522.609889	1564.80784	-0.46331	-0.00024213	4.0078	0.0020945	3.5445	0.0018524	522.946498118068	52.698	0.19978	52.571	52.432	52.632	-0.12705					7	4	2	0	0	0	0.024888	1	5472	5472		3.2113	0	1	83114			11834	5062	8194	8211	13255	13255					0.04802452108219768
ELFTVDGRR	9	Unmodified	_ELFTVDGRR_					0	0	0			REV__ENSG00000146282|ENST00000369536|RARS2	REV__ENSG00000146282|ENST00000369536|RARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3267211914062	2	546.793455	1091.57236	-0.36183	-0.00019785	-2.4307	-0.0013291	-2.7926	-0.001527	547.294200213401	41.154	0.20833	41.154	40.981	41.189	0					6	5	2	0	0	0	0.024292	1	3679	3679		49.442	0	1	272770	+		11835	24476	8195	8212	13256	13256					0.03023359703456663
ELFVKMKIP	9	Unmodified	_ELFVKMKIP_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8185424804688	2	552.827921	1103.64129	-0.77192	-0.00042674	2.9498	0.0016307	2.1778	0.001204	552.8294600014138	62.922	0.57145	62.922	62.729	63.301	0					27	14	3	0	0	0	0.024487	1	7311	7311		31.955	1.4512	1	584610	+		11836	26756	8196	8213	13257	13257					0.09361307678818775
ELFVKMKIP	9	Unmodified	_ELFVKMKIP_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.827921	1103.64129	-0.6697	-0.00037023	3.3182	0.0018344	2.6485	0.0014642	552.829637146174	63.146	0.46807	62.907	62.736	63.204	-0.23926	-0.014293	0.00081258	NaN	51.335	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498460	+		11837	26756	8196	8213							0.09361307678818775
ELFVKMKIP	9	Unmodified	_ELFVKMKIP_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	552.827921	1103.64129	0.49243	0.00027223	1.7565	0.00097103	2.2489	0.0012433	552.8288573780246	62.881	0.46607	62.935	62.801	63.267	0.054104	0.013933	-0.00091416	NaN	51.335	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408090	+		11838	26756	8196	8213							0.09361307678818775
ELFYETNFSN	10	Unmodified	_ELFYETNFSN_					0	0	0			REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	631.3278198242188	2	632.280043	1262.54553	0.17344	0.00010966	0.48088	0.00030405	0.65432	0.00041371	632.2803507431107	56.741	0.43108	56.517	56.269	56.7	-0.2248					23	10	3	0	0	0	0.03519	1	6127	6127		24.519	0	1	316010	+		11839	23722	8197	8214	13258	13258					-0.07523793698351255
ELFYKLVT	8	Unmodified	_ELFYKLVT_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.78814697265625	2	506.789318	1011.56408	-1.0646	-0.00053955	-3.749	-0.0019	-4.8136	-0.0024395	506.7872167151045	48.946	0.80366	49.021	48.736	49.54	0.074196					57	21	3	0	0	0	0.845	1	4981	4981		55.504	2.1528	1	2764200	+		11840	20421	8198	8215	13259	13259					0.058764127341419226
ELGAADKPK	9	Unmodified	_ELGAADKPK_					0	0	0			REV__ENST00000460194.1_1_7:100482600-100483069:+|nuORF	REV__ENST00000460194.1_1_7:100482600-100483069:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790222167969	2	464.758549	927.502546	-0.30067	-0.00013974	0.16578	7.7049E-05	-0.13488	-6.2688E-05	464.7579274130584	51.577	0.9468	51.664	51.411	52.358	0.087009					29	25	2	0	0	0	0.024319	1	5435	5435		39.253	3.6345	1	219470	+		11841	20785	8199	8216	13260	13260					0.035894810348509054
ELGAPLRLALW	11	Unmodified	_ELGAPLRLALW_					0	0	0			REV__ENST00000278550.11_1_11:78482086-78482179:-|nuORF	REV__ENST00000278550.11_1_11:78482086-78482179:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8693237304688	2	619.866423	1237.71829	0.12405	7.6895E-05	4.447	0.0027565	4.5711	0.0028334	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0292	1	11396	11396		30.318	4.8675	1	1596200	+		11842	29865	8200	8217	13261	13261					0.10894242219501393
ELGCFQLEL	9	Unmodified	_ELGCFQLEL_					0	0	0		ENSG00000159899|ENST00000342694|NPR2;ENST00000464810.5_1_9:35808735-35809439:+|nuORF	ENSG00000159899|ENST00000342694|NPR2	ENSG00000159899|ENST00000342694|NPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8021850585938	2	526.260068	1050.50558	-1.2602	-0.00066317	4.1027	0.0021591	2.8425	0.0014959	526.2624367819651	76.032	0.73549	76.032	75.696	76.431	0					25	18	2	0	0	0	0.024209	1	9406	9406		39.253	0.44669	1	168380			11843	6773	8201	8218	13262	13262					-0.01765011902648439
ELGDLVKTT	9	Unmodified	_ELGDLVKTT_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2655334472656	2	488.27149	974.528426	0.25565	0.00012482	-2.0305	-0.00099141	-1.7748	-0.00086659	488.2706373456197	56.34	0.6245	56.124	55.881	56.506	-0.21607					16	15	2	0	0	0	0.023417	1	6076	6076		68.787	7.8149	1	259760			11844	1424	8202	8219	13263	13263					0.040143304864727725
ELGEEKDEEEG	11	Unmodified	_ELGEEKDEEEG_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	632.2662353515625	2	632.264787	1262.51502	-0.88285	-0.00055819	2.5877	0.0016361	1.7048	0.0010779	632.2664443097652	33.234	1.1673	33.003	32.67	33.837	-0.23107					79	28	4	0	0	0	0.7505	1	2358	2358		59.931	11.971	1	2691300	+		11845	37064;31322	8203	8220	13264	13264					-0.10573616874057734
ELGEEKDEEEG	11	Unmodified	_ELGEEKDEEEG_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	632.266357421875	2	632.264787	1262.51502	-0.72111	-0.00045593	2.0155	0.0012743	1.2944	0.00081839	632.2663625760867	33.282	0.98215	33.082	32.813	33.795	-0.20019					88	24	6	0	0	0	0.61691	1	2363	2363		68.846	19.405	1	4163200	+		11846	37064;31322	8203	8220	13265	13265					-0.10573616874057734
ELGEEKDEEEG	11	Unmodified	_ELGEEKDEEEG_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.8465576171875	3	421.845617	1262.51502	-0.097444	-4.1106E-05	1.2447	0.00052508	1.1473	0.00048398	421.84648922159715	33.295	2.6754	33.095	32.771	35.447	-0.20019					172	67	7	0	0	0	0.99147	1	2385	2385		38.714	5.6747	1	17150000	+		11847	37064;31322	8203	8220	13266	13266					-0.10573616874057734
ELGEEKDEEEG	11	Unmodified	_ELGEEKDEEEG_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	632.26611328125	2	632.264787	1262.51502	-0.96481	-0.00061002	2.5948	0.0016406	1.63	0.0010306	632.2664681287137	33.148	1.2686	32.983	32.638	33.906	-0.16565					85	31	4	0	0	0	0.83252	1	2333	2333		54.722	1.7857	1	2745100	+		11848	37064;31322	8203	8220	13267	13267					-0.10573616874057734
ELGEEKDEEEG	11	Unmodified	_ELGEEKDEEEG_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	632.264787	1262.51502	-0.72111	-0.00045593	2.0155	0.0012743	1.2944	0.00081839	632.2663625760867	33.282	0.98215	33.082	32.813	33.795	-0.20019	0.05936	-0.00066358	NaN	68.846	88	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4163200	+		11849	37064;31322	8203	8220							-0.10573616874057734
ELGEEKDEEEG	11	Unmodified	_ELGEEKDEEEG_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	632.264787	1262.51502	-0.96481	-0.00061002	2.5948	0.0016406	1.63	0.0010306	632.2664681287137	33.148	1.2686	32.983	32.638	33.906	-0.16565	-0.03996	6.8993E-05	NaN	68.846	85	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2745100	+		11850	37064;31322	8203	8220							-0.10573616874057734
ELGGHLDQQV	10	Unmodified	_ELGGHLDQQV_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.7957763671875	2	548.275095	1094.53564	-1.21	-0.00066339	3.8914	0.0021336	2.6814	0.0014702	548.7794808582465	53.989	0.14691	53.853	53.721	53.867	-0.13617					6	4	2	0	0	0	0.03519	1	5699	5699		25.574	9.1009	1	73035			11851	3031	8204	8221	13268	13268					-0.007849369131008643
ELGGLSLMIL	10	Unmodified	_ELGGLSLMIL_					0	0	0			REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.302734375	2	523.301736	1044.58892	-0.57229	-0.00029948	3.7093	0.0019411	3.137	0.0016416	523.3036214104253	85.222	2.9903	85.164	83.29	86.28	-0.057617					185	70	4	0	0	0	0.82838	1	10804	10804		58.782	7.4465	1	2871100	+		11852	33566	8205	8222	13269	13269					0.06840724545213561
ELGGLSLMIL	10	Unmodified	_ELGGLSLMIL_					0	0	0			REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3029174804688	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	1.0271	1	10758	10758		42.396	4.888	1	11897000	+		11853	33566	8205	8222	13270	13270					0.06840724545213561
ELGGLSLMIL	10	Unmodified	_ELGGLSLMIL_					0	0	0			REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3035278320312	2	523.301736	1044.58892	0.12304	6.4388E-05	3.2645	0.0017083	3.3876	0.0017727	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	1.0271	1	10447	10447		42.396	6.7778	1	3963900	+		11854	33566	8205	8222	13271	13271					0.06840724545213561
ELGGLSLMIL	10	Unmodified	_ELGGLSLMIL_					0	0	0			REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	REV__ENST00000485727.5_1_3:123674041-123674137:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3035888671875	2	523.301736	1044.58892	0.50944	0.00026659	2.7838	0.0014567	3.2932	0.0017233	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	1.1307	1	10428	10428		26.693	1.5669	1	3714800	+		11855	33566	8205	8222	13272	13272					0.06840724545213561
ELGGQTVLHR	10	Unmodified	_ELGGQTVLHR_					0	0	0		ENST00000484717.5_1_3:38035793-38043423:+|nuORF;nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.2893676757812	2	555.306729	1108.59891	0.020652	1.1468E-05	3.9216	0.0021777	3.9422	0.0021891	555.3087778310842	67.245	0.36124	67.269	67.028	67.389	0.023911					16	8	2	0	0	0	0.03519	1	7957	7957		41.427	13.544	1	122130			11856	4978	8206	8223	13273	13273					0.048950485947898414
ELGHLTRLL	9	Unmodified	_ELGHLTRLL_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2784423828125	2	526.316566	1050.61858	-0.49344	-0.00025971	-3.6111	-0.0019006	-4.1045	-0.0021603	526.3145542987006	85.391	1.9133	85.416	84.291	86.204	0.025536					81	45	2	0	0	0	0.024381	1	10543	10543		37.159	12.956	1	158420	+		11857	26733	8207	8224	13274	13274					0.09529424605557324
ELGHPFGY	8	Unmodified	_ELGHPFGY_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.769287109375	2	460.21906	918.423567	-0.35293	-0.00016243	-1.2615	-0.00058056	-1.6144	-0.00074299	460.2179786583398	40.157	0.18602	40.18	40.013	40.199	0.023006					7	4	2	0	0	0	0.027866	1	3427	3427		15.636	1.8609	1	61488			11858	2428;15719	8208	8225	13275	13275					-0.03890746199431305
ELGLAYQMV	9	Oxidation (M)	_ELGLAYQM(Oxidation (M))V_		ELGLAYQM(1)V		ELGLAYQM(44)V	0	0	1		ENST00000263063.8_1_10:30602469-30602541:-|nuORF	ENST00000263063.8_1_10:30602469-30602541:-|nuORF	ENST00000263063.8_1_10:30602469-30602541:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2622680664062	2	520.260068	1038.50558	-1.1222	-0.00058384	3.9802	0.0020707	2.858	0.0014869	520.2622174647464	22.622	1.0252	22.696	22.365	23.39	0.073954					64	22	5	0	0	0	0.72875	1	748	748		44.117	6.9577	1	5396700			11859	11518	8209	8226	13276	13276		468			-0.012130119026551256
ELGLDAFNSID	11	Unmodified	_ELGLDAFNSID_					0	0	0			REV__ENST00000546332.1_1_X:15288045-15288583:-|nuORF	REV__ENST00000546332.1_1_X:15288045-15288583:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8560791015625	2	597.287868	1192.56118	-1.2707	-0.00075895	-0.15238	-9.1017E-05	-1.423	-0.00084996	597.2877067626004	89.873	1.338	89.71	89.215	90.553	-0.1626					42	31	2	0	0	0	0.024762	1	11098	11098		23.523	10.564	1	387960	+		11860	34839	8210	8227	13277	13277					-0.027395071813316463
ELGLDAFNSID	11	Unmodified	_ELGLDAFNSID_					0	0	0			REV__ENST00000546332.1_1_X:15288045-15288583:-|nuORF	REV__ENST00000546332.1_1_X:15288045-15288583:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	597.287868	1192.56118	-0.066675	-3.9824E-05	-1.7426	-0.0010408	-1.8093	-0.0010806	597.286754582096	89.892	0.75835	89.754	89.358	90.116	-0.13824	0.034367	-0.00092203	NaN	23.523	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389730	+		11861	34839	8210	8227							-0.027395071813316463
ELGLLRTK	8	Unmodified	_ELGLLRTK_					0	0	0			REV__ENST00000606723.2_1_6:25993102-25998179:+|nuORF	REV__ENST00000606723.2_1_6:25993102-25998179:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.777587890625	2	465.292559	928.570566	0.30638	0.00014255	-1.9711	-0.00091714	-1.6647	-0.00077459	465.29254651728866	81.315	0.16672	81.086	80.98	81.147	-0.22891					5	3	2	0	0	0	0.027866	1	9766	9766		19.104	0	1	20309	+		11862	35936	8211	8228	13278	13278					0.1034235068552789
ELGLNEGRI	9	Unmodified	_ELGLNEGRI_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7744445800781	2	500.774731	999.534909	-0.38067	-0.00019063	-0.35314	-0.00017685	-0.73382	-0.00036748	500.7748722252305	30.12	0.67673	29.876	29.568	30.245	-0.24415					47	15	4	0	0	0	0.39228	1	1898	1898		66.429	3.123	1	590420	+		11863	28834	8212	8229	13279	13279					0.03512268437862076
ELGLPDGLLL	10	Unmodified	_ELGLPDGLLL_					0	0	0			REV__ENST00000359428.9_2_9:134098272-134109028:+|nuORF	REV__ENST00000359428.9_2_9:134098272-134109028:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2988891601562	2	520.305332	1038.59611	-0.16712	-8.6952E-05	1.9973	0.0010392	1.8302	0.00095225	520.3075949705261	105.16	0.78873	105.16	104.53	105.32	0					39	24	3	0	0	0	0.941	1	13489	13489		51.335	7.2187	1	194120	+		11864	30880	8213	8230	13280	13280					0.07835780417281057
ELGLPYRHG	9	Unmodified	_ELGLPYRHG_					0	0	0			REV__ENST00000515837.6_1_11:61159910-61160000:+|nuORF	REV__ENST00000515837.6_1_11:61159910-61160000:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2471313476562	2	521.277441	1040.54033	0.40436	0.00021078	-1.4045	-0.00073216	-1.0002	-0.00052138	521.2775167840258	83.67	0.63322	83.459	83.135	83.768	-0.21159					22	14	3	0	0	0	0.024436	1	10079	10079		38.806	0	1	105780	+		11865	34211	8214	8231	13281	13281					0.02167992020326892
ELGMQVNH	8	Unmodified	_ELGMQVNH_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2332763671875	2	464.221277	926.428001	-0.030633	-1.422E-05	0.1388	6.4433E-05	0.10817	5.0213E-05	464.221253512999	53.753	0.70467	53.753	53.474	54.179	0					44	19	3	0	0	0	0.027866	1	5849	5849		31.955	7.7521	1	1576900	+		11866	26290	8215	8232	13282	13282					-0.03815605048168891
ELGNLKIKS	9	Unmodified	_ELGNLKIKS_					0	0	0			REV__nc|ENSG00000136068|O75369-7|FLNB	REV__nc|ENSG00000136068|O75369-7|FLNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.27728271484375	2	501.303124	1000.5917	0.62901	0.00031532	1.9542	0.00097966	2.5832	0.001295	501.3024568208141	64.184	1.3135	64.184	63.845	65.158	0					91	35	4	0	0	0	0.0242	1	7611	7611		51.193	0	1	1950800	+		11867	23622	8216	8233	13283	13283					0.09142315994381534
ELGPRLPPL	9	Unmodified	_ELGPRLPPL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.28973388671875	2	496.300384	990.586216	0.14237	7.0658E-05	3.6553	0.0018141	3.7977	0.0018848	496.3022608088332	50.723	0.50873	50.723	50.411	50.92	0					16	14	2	0	0	0	0.023417	1	5361	5361		49.442	13.823	1	127760			11868	10379	8217	8234	13284	13284					0.0905463720255284
ELGRLLLR	8	Unmodified	_ELGRLLLR_					0	0	0			REV__ENSG00000169855|ENST00000464233|ROBO1	REV__ENSG00000169855|ENST00000464233|ROBO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.272216796875	2	485.313826	968.613099	-0.05601	-2.7183E-05	0.49026	0.00023793	0.43425	0.00021075	485.31369163287036	32.664	0.66035	32.428	32.086	32.746	-0.23666					27	15	3	0	0	0	0.027866	1	2287	2287		13.775	0	1	202600	+		11869	26403	8218	8235	13285	13285					0.12753745813756723
ELGRQALGSP	10	Unmodified	_ELGRQALGSP_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;KMT2D|p.Q3158Pfs*2|1|0.25|ENSG00000167548|chr12:49037880-49037883|CTCT/-|frameshift_variant;KMT2D|p.P3156Afs*20|1|0.6|ENSG00000167548|chr12:49037891-49037892|-/T|frameshift_variant;KMT2D|p.T3053Yfs*2|1|0.34|ENSG00000167548|chr12:49038199-49038200|-/A|frameshift_variant;KMT2D|p.V3089Wfs*30|2|0.5|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2820434570312	2	514.28018	1026.54581	-0.20194	-0.00010385	4.0759	0.0020962	3.874	0.0019923	514.7849708306476	65.703	0.39596	65.43	65.362	65.758	-0.27282					14	10	2	0	0	0	0.03519	1	7799	7799		47.657	17.154	1	62171			11870	7698	8219	8236	13286	13286					0.0335967081216495
ELGRRKAVL	9	Unmodified	_ELGRRKAVL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2471313476562	2	521.330008	1040.64546	0.40364	0.00021043	0.19911	0.0001038	0.60275	0.00031423	521.3295450762524	83.626	0.29056	83.414	83.351	83.641	-0.21159					8	6	2	0	0	0	0.024477	1	10079	10079		44.117	14.967	1	71436	+		11871	20890	8220	8237	13287	13287					0.12676533216745156
ELGRRKAVL	9	Unmodified	_ELGRRKAVL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.2472534179688	2	521.330008	1040.64546	0.33271	0.00017345	-0.49258	-0.0002568	-0.15987	-8.3347E-05	521.3295651138945	83.651	0.41621	83.512	83.255	83.671	-0.1386					10	9	2	0	0	0	0.024457	1	10066	10066		21.96	0	1	60644	+		11872	20890	8220	8237	13288	13288					0.12676533216745156
ELGRVPELP	9	Unmodified	_ELGRVPELP_					0	0	0		ENST00000342179.9_1_19:32897083-32897170:+|nuORF	ENST00000342179.9_1_19:32897083-32897170:+|nuORF	ENST00000342179.9_1_19:32897083-32897170:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7579345703125	2	505.287474	1008.5604	0.30146	0.00015232	-2.6509	-0.0013394	-2.3494	-0.0011871	505.2858562263222	101.06	0.55039	101.05	100.81	101.36	-0.0054474					21	12	2	0	0	0	0.024017	1	12830	12830		65.465	26.213	1	95623			11873	12506	8221	8238	13289	13289					0.056457429602687625
ELGSPRTLS	9	Unmodified	_ELGSPRTLS_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7351989746094	2	480.261456	958.50836	-0.18991	-9.1208E-05	-2.1588	-0.0010368	-2.3487	-0.001128	480.2611848820637	60.355	0.11803	60.101	60.014	60.132	-0.25374					4	2	2	0	0	0	0.024374	1	6690	6690		25.574	0	1	51441			11874	6346	8222	8239	13290	13290					0.027445795465382616
ELGSRRIRPQ	10	Unmodified	_ELGSRRIRPQ_					0	0	0			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.23919677734375	3	404.570427	1210.68945	0.13959	5.6474E-05	0.84518	0.00034193	0.98477	0.00039841	404.5707418079669	27.424	0.51309	27.411	27.17	27.683	-0.012983					24	13	2	0	0	0	0.03519	1	1472	1472		42.338	4.8299	1	344210	+		11875	27392	8223	8240	13291	13291					0.09253517643082887
ELGTKRLN	8	Unmodified	_ELGTKRLN_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2541198730469	2	465.771991	929.529429	0.050397	2.3474E-05	0.09636	4.4882E-05	0.14676	6.8355E-05	465.77182342751905	39.967	0.68279	39.967	39.529	40.212	0					35	18	3	0	0	0	0.027866	1	3442	3442		19.997	0	1	494850	+		11876	26592	8224	8241	13292	13292					0.061845896460340555
ELGVETIRN	9	Unmodified	_ELGVETIRN_					0	0	0			REV__nc|ENSG00000160838|Q8N4P6-2|LRRC71	REV__nc|ENSG00000160838|Q8N4P6-2|LRRC71	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8046264648438	2	515.780013	1029.54547	-0.63463	-0.00032733	2.273	0.0011724	1.6384	0.00084504	515.7809702556623	58.102	0.69067	58.193	57.908	58.598	0.091217					49	18	4	0	0	0	0.024374	1	6496	6496		49.442	0	1	2898800	+		11877	25351	8225	8242	13293	13293					0.03188251092274186
ELHAAPNL	8	Unmodified	_ELHAAPNL_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.73187255859375	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	1.043	1	12259	12259		30.504	0	1	2327700	+		11878	25190	8226	8243	13294	13294					0.01292942691884491
ELHALIDKY	9	Unmodified	_ELHALIDKY_					0	0	0			REV__sp|P03213|PORTL_EBVB9PortalproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF1PE=1SV=1	REV__sp|P03213|PORTL_EBVB9PortalproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2586059570312	2	551.300581	1100.58661	-0.013364	-7.3673E-06	0.81275	0.00044807	0.79939	0.0004407	551.3002232552234	63.923	0.42545	63.664	63.531	63.956	-0.25824					15	10	2	0	0	0	0.023417	1	7241	7241		79.451	16.145	1	212420	+		11879	37541	8227	8244	13295	13295					0.04034012131751297
ELHCKGLTK	9	Unmodified	_ELHCKGLTK_					0	0	0		nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B;ENST00000547496.5_1_12:89853476-89885774:-|nuORF;ENST00000539190.6_1_12:89855074-89919672:-|nuORF	nc|ENSG00000139323|Q8TC44-2|POC1B	nc|ENSG00000139323|Q8TC44-2|POC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3090209960938	2	514.781502	1027.54845	-0.56284	-0.00028974	-2.7007	-0.0013903	-3.2636	-0.00168	514.7797876460438	60.62	0.68262	60.367	59.94	60.623	-0.25373					31	16	3	0	0	0	0.024397	1	6739	6739		39.253	9.4113	1	220210			11880	5324	8228	8245	13296	13296					0.03577802945437725
ELHFRCEP	8	Unmodified	_ELHFRCEP_					0	0	0			REV__ENSG00000106018|ENST00000262178|VIPR2	REV__ENSG00000106018|ENST00000262178|VIPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2825317382812	2	515.742376	1029.4702	-0.68127	-0.00035136	0.78392	0.0004043	0.10264	5.2937E-05	515.7425877905695	81.335	0.65193	81.335	80.978	81.63	0					23	15	2	0	0	0	0.027866	1	10128	10128		31.955	7.7521	1	91482	+		11881	21589	8229	8246	13297	13297					-0.043356296397860206
ELHFRCEP	8	Unmodified	_ELHFRCEP_					0	0	0			REV__ENSG00000106018|ENST00000262178|VIPR2	REV__ENSG00000106018|ENST00000262178|VIPR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.742376	1029.4702	-0.76347	-0.00039375	0.74204	0.0003827	-0.021428	-1.1051E-05	515.7425999793209	81.521	0.49019	81.391	81.135	81.625	-0.13075	0.011654	-5.3136E-05	NaN	31.955	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85968	+		11882	21589	8229	8246							-0.043356296397860206
ELHFRCEP	8	Unmodified	_ELHFRCEP_					0	0	0			REV__ENSG00000106018|ENST00000262178|VIPR2	REV__ENSG00000106018|ENST00000262178|VIPR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.742376	1029.4702	-1.1512	-0.00059373	1.2084	0.00062324	0.05723	2.9516E-05	515.742789748401	81.388	0.89137	81.412	81.046	81.938	0.023903	0.032478	0.00042795	NaN	31.955	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72843	+		11883	21589	8229	8246							-0.043356296397860206
ELHFRCEP	8	Unmodified	_ELHFRCEP_					0	0	0			REV__ENSG00000106018|ENST00000262178|VIPR2	REV__ENSG00000106018|ENST00000262178|VIPR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.742376	1029.4702	-0.45739	-0.0002359	-0.2986	-0.000154	-0.75599	-0.0003899	516.2440448382351	81.522	0.41883	81.379	81.151	81.57	-0.14249	3.787E-05	-0.0011265	NaN	31.955	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50347	+		11884	21589	8229	8246							-0.043356296397860206
ELHFTALI	8	Unmodified	_ELHFTALI_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7531433105469	2	472.26601	942.517468	-0.67306	-0.00031786	-3.2463	-0.0015331	-3.9194	-0.001851	472.2645539896745	35.77	0.41658	35.728	35.447	35.864	-0.042458					13	10	2	0	0	0	0.027866	1	2758	2758		40.573	0	1	69105			11885	3979	8230	8247	13298	13298					0.04390972902854173
ELHILGSPLL	10	Unmodified	_ELHILGSPLL_					0	0	0			REV__ENST00000366481.3_1_1:248040148-248040412:+|nuORF	REV__ENST00000366481.3_1_1:248040148-248040412:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.3269653320312	2	546.326599	1090.63865	-0.31734	-0.00017337	0.36066	0.00019704	0.043323	2.3668E-05	546.3267295007176	79.741	1.74	79.59	79.236	80.976	-0.15051					56	41	2	0	0	0	0.65054	1	9531	9531		71.296	1.6681	1	1817600	+		11886	30972	8231	8248	13299	13299					0.09695175545539314
ELHILYKF	8	Unmodified	_ELHILYKF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|330|3|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|330|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7889404296875	2	531.80276	1061.59097	-0.40413	-0.00021492	-3.3583	-0.0017859	-3.7624	-0.0020009	531.8005283500331	64.17	0.75771	63.943	63.662	64.42	-0.22773					32	18	2	0	0	0	0.027866	1	7289	7289		30.504	0	1	880780	+		11887	36275	8232	8249	13300	13300					0.06263521345317713
ELHINSGGKL	10	Unmodified	_ELHINSGGKL_					0	0	0		ENST00000413279.1_1_2:136268294-136268516:-|nuORF	ENST00000413279.1_1_2:136268294-136268516:-|nuORF	ENST00000413279.1_1_2:136268294-136268516:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.270751953125	2	534.29583	1066.57711	-0.51641	-0.00027591	3.949	0.0021099	3.4326	0.001834	534.2977236041072	52.15	0.74363	52.003	51.745	52.488	-0.14735					54	19	4	0	0	0	0.03519	1	5589	5589		101.25	18.948	1	2131700			11888	13838	8233	8250	13301	13301					0.046482438462589926
ELHKKLLSV	9	Unmodified	_ELHKKLLSV_					0	0	0		ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7971801757812	2	533.834591	1065.65463	-1.1411	-0.00060917	-3.5362	-0.0018877	-4.6773	-0.0024969	533.8326115897926	55.029	0.20744	55.127	55.05	55.257	0.098015					6	5	2	0	0	0	0.024511	1	5988	5988		32.812	12.331	1	133900			11889	8877	8234	8251	13302	13302					0.12442881782430959
ELHKKLLSV	9	Unmodified	_ELHKKLLSV_					0	0	0		ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.3162841796875	2	533.834591	1065.65463	-0.80036	-0.00042726	0.35919	0.00019175	-0.44118	-0.00023551	533.8347290891908	33.672	0.65764	33.472	33.209	33.866	-0.20019					35	16	3	0	0	0	0.024397	1	2424	2424		39.253	0	1	935540			11890	8877	8234	8251	13303	13303					0.12442881782430959
ELHKKLLSV	9	Unmodified	_ELHKKLLSV_					0	0	0		ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.31787109375	2	533.834591	1065.65463	-1.5383	-0.00082117	1.0648	0.00056842	-0.47347	-0.00025276	533.8350979909635	33.637	0.63238	33.472	33.236	33.869	-0.16565					32	15	3	0	0	0	0.024367	1	2395	2395		29.17	0	1	869800			11891	8877	8234	8251	13304	13304					0.12442881782430959
ELHKLKKL	8	Unmodified	_ELHKLKKL_					0	0	0			REV__ENST00000379707.7_1_9:33255219-33262163:-|nuORF	REV__ENST00000379707.7_1_9:33255219-33262163:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7900390625	2	504.831852	1007.64915	-0.7211	-0.00036403	-0.054792	-2.7661E-05	-0.77589	-0.00039169	504.83169195627704	35.213	0.26939	35.027	34.911	35.18	-0.18675					9	6	2	0	0	0	0.027866	1	2628	2628		12.207	0	1	78395	+		11892	21661	8235	8252	13305	13305					0.14563202990609625
ELHKVFEVT	9	Unmodified	_ELHKVFEVT_					0	0	0		ENST00000367051.5_1_1:207812769-207813015:+|nuORF	ENST00000367051.5_1_1:207812769-207813015:+|nuORF	ENST00000367051.5_1_1:207812769-207813015:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2816162109375	2	551.300581	1100.58661	-0.87204	-0.00048075	0.46486	0.00025628	-0.40718	-0.00022448	551.3009215057879	61.851	0.22888	61.673	61.576	61.804	-0.17781					6	5	2	0	0	0	0.024506	1	6952	6952		23.042	6.5693	1	121480			11893	12836	8236	8253	13306	13306					0.04034012131774034
ELHLLVKAL	9	Unmodified	_ELHLLVKAL_					0	0	0			REV__ENSG00000100726|ENST00000262319|TELO2	REV__ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.261962890625	2	518.331685	1034.64882	-0.76908	-0.00039864	0.50546	0.00026199	-0.26362	-0.00013664	518.3318021412674	56.149	0.54249	55.993	55.713	56.255	-0.15656					22	13	2	0	0	0	0.024487	1	6050	6050		24.203	0	1	264420	+		11894	21145	8237	8254	13307	13307					0.1328778327076634
ELHLWGDL	8	Unmodified	_ELHLWGDL_					0	0	0		nc|ENSG00000118242|Q8N565-2|MREG	nc|ENSG00000118242|Q8N565-2|MREG	nc|ENSG00000118242|Q8N565-2|MREG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.29754638671875	2	491.753267	981.491981	0.29813	0.00014661	2.6933	0.0013245	2.9915	0.0014711	491.75460465104163	47.388	0.43795	47.119	46.874	47.311	-0.26939					18	11	2	0	0	0	0.027866	1	4644	4644		40.573	17.53	1	230060			11895	18206	8238	8255	13308	13308					0.0004949838042875854
ELHLWGDL	8	Unmodified	_ELHLWGDL_					0	0	0		nc|ENSG00000118242|Q8N565-2|MREG	nc|ENSG00000118242|Q8N565-2|MREG	nc|ENSG00000118242|Q8N565-2|MREG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.753267	981.491981	-0.52246	-0.00025692	4.2447	0.0020873	3.7222	0.0018304	491.75497314124385	47.025	0.44016	46.928	46.682	47.122	-0.096653	-0.075853	0.0011999	NaN	40.573	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231760			11896	18206	8238	8255							0.0004949838042875854
ELHPGPLPKP	10	Unmodified	_ELHPGPLPKP_					0	0	0			REV__ENSG00000006062|ENST00000344686|MAP3K14	REV__ENSG00000006062|ENST00000344686|MAP3K14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2462768554688	2	542.811116	1083.60768	-0.78838	-0.00042794	-4.091	-0.0022206	-4.8794	-0.0026486	542.8076822941059	61.035	0.64499	61.106	60.985	61.63	0.071129					27	16	3	0	0	0	0.03519	1	7038	7038		24.519	0	1	529770	+		11897	19821	8240	8256	13309	13309					0.06922022231265146
ELHPKYTED	9	Unmodified	_ELHPKYTED_					0	0	0			REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.3160400390625	2	566.269478	1130.5244	-0.44995	-0.0002548	-3.7018	-0.0020962	-4.1518	-0.002351	566.767917469949	36.626	0.63233	36.626	36.334	36.966	0					22	16	2	0	0	0	0.024261	1	2959	2959		54.776	1.4249	1	72047	+		11898	27877	8241	8257	13310	13310					-0.03563759007238332
ELHQGAVRA	9	Unmodified	_ELHQGAVRA_					0	0	0		ENST00000425773.1_1_20:57089925-57090084:-|nuORF	ENST00000425773.1_1_20:57089925-57090084:-|nuORF	ENST00000425773.1_1_20:57089925-57090084:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7767333984375	2	490.76724	979.519927	-0.33538	-0.00016459	-0.016177	-7.9394E-06	-0.35156	-0.00017253	490.7671348763188	28.404	0.5342	28.485	28.208	28.742	0.080811					20	12	2	0	0	0	0.024405	1	1594	1594		20.947	3.582	1	150380			11899	14069	8242	8258	13311	13311					0.029348213605203455
ELHQRREQL	9	Unmodified	_ELHQRREQL_					0	0	0		nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;ENST00000494069.1_1_3:197566242-197575018:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3;ENST00000494069.1_1_3:197566242-197575018:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5548400878906	3	403.554666	1207.64217	0.92482	0.00037322	-0.82165	-0.00033158	0.10317	4.1634E-05	403.5541443678137	22.267	1.3591	22.078	21.434	22.793	-0.18894					67	28	4	0	0	0	0.50848	1	768	768		58.782	17.355	1	1469800			11900	9502;15518	8243	8259	13312	13312					0.046652383720811486
ELHRLLQSL	9	Unmodified	_ELHRLLQSL_					0	0	0		ENSG00000006025|ENST00000007414|OSBPL7;nc|ENSG00000006025|Q9BZF2-2|OSBPL7	ENSG00000006025|ENST00000007414|OSBPL7	ENSG00000006025|ENST00000007414|OSBPL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.305908203125	2	554.827298	1107.64004	-0.89921	-0.00049891	0.42133	0.00023376	-0.47788	-0.00026514	554.827567656276	43.819	0.36389	43.819	43.658	44.022	0					14	9	2	0	0	0	0.024389	1	4108	4108		51.193	15.574	1	334120			11901	781	8244	8260	13313	13313					0.09052809634295045
ELHRPNVLL	9	Unmodified	_ELHRPNVLL_					0	0	0		PHF3|p.L1341V|1|0.06|ENSG00000118482|chr6:63711609-63711609|C/G|missense_variant	PHF3|p.L1341V|1|0.06|ENSG00000118482|chr6:63711609-63711609|C/G|missense_variant	PHF3|p.L1341V|1|0.06|ENSG00000118482|chr6:63711609-63711609|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7820434570312	2	545.822015	1089.62948	-0.54635	-0.00029821	-1.2597	-0.00068755	-1.806	-0.00098576	545.8190295998536	75.733	0.19551	75.461	75.306	75.502	-0.27266					7	4	2	0	0	0	0.024541	1	8960	8960		17.365	4.4058	1	57749			11902	18962	8245	8261	13314	13314					0.08824826979844147
ELHSIACIGF	10	Unmodified	_ELHSIACIGF_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.27587890625	2	545.273509	1088.53247	-0.30268	-0.00016504	1.6612	0.00090583	1.3586	0.00074079	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.75995	1	9533	9533		63.306	9.9548	1	57394000	+		11903	27294	8246	8262	13315	13315					-0.008259032914338604
ELHSIACIGF	10	Unmodified	_ELHSIACIGF_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.275634765625	2	545.273509	1088.53247	-0.96677	-0.00052716	2.5394	0.0013847	1.5727	0.00085753	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.91051	1	9562	9562		53.351	0	1	52905000	+		11904	27294	8246	8262	13316	13316					-0.008259032914338604
ELHTAIRN	8	Unmodified	_ELHTAIRN_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.756103515625	2	477.261791	952.509028	1.1934	0.00056957	2.8081	0.0013402	4.0015	0.0019098	477.26324925278965	58.803	0.51752	58.616	58.348	58.866	-0.18705					33	13	4	0	0	0	0.027866	1	6608	6608		25.45	7.1258	1	431550	+		11905	19687	8247	8263	13317	13317					0.03087418986240209
ELHTAIRN	8	Unmodified	_ELHTAIRN_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.261791	952.509028	1.2733	0.00060768	3.8229	0.0018245	5.0961	0.0024322	477.26335461331786	58.636	0.76556	58.636	58.38	59.145	0	0.029316	-0.00019912	NaN	33.516	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512140	+		11906	19687	8247	8263							0.03087418986240209
ELHTLGQAAR	10	Unmodified	_ELHTLGQAAR_					0	0	0		OCEL1|p.Q19H|1|0.18|ENSG00000099330|chr19:17226304-17226304|G/C|missense_variant	OCEL1|p.Q19H|1|0.18|ENSG00000099330|chr19:17226304-17226304|G/C|missense_variant	OCEL1|p.Q19H|1|0.18|ENSG00000099330|chr19:17226304-17226304|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3072509765625	2	548.298904	1094.58326	-0.091897	-5.0387E-05	1.9635	0.0010766	1.8716	0.0010262	548.3000553047315	63.178	0.64618	62.92	62.706	63.352	-0.25824					26	15	2	0	0	0	0.03519	1	7105	7105		34.173	3.6689	1	225780			11907	18901	8248	8264	13318	13318					0.03974762077768901
ELIAEESHC	9	Unmodified	_ELIAEESHC_					0	0	0			REV__ENSG00000170745|ENST00000304101|KCNS3	REV__ENSG00000170745|ENST00000304101|KCNS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2719116210938	2	515.729132	1029.44371	-1.0255	-0.00052888	-2.1781	-0.0011233	-3.2036	-0.0016522	515.7277515276679	48.718	0.55732	48.618	48.323	48.88	-0.1008					32	14	3	0	0	0	0.024323	1	4890	4890		53.351	3.3269	1	371730	+		11908	26500	8249	8265	13319	13319					-0.0698336332177405
ELIARIMS	8	Unmodified	_ELIARIMS_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.73138427734375	2	466.76532	931.516088	-0.34094	-0.00015914	1.1812	0.00055136	0.8403	0.00039222	466.7655285668695	60.497	0.45339	60.284	60.04	60.493	-0.2134					17	11	2	0	0	0	0.027866	1	6918	6918		23.042	0	1	141050	+		11909	20167	8250	8266	13320	13320					0.047590155424586555
ELICVADRL	9	Unmodified	_ELICVADRL_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.22119140625	2	516.281334	1030.54812	-0.98264	-0.00050732	1.703	0.00087925	0.72039	0.00037193	516.2853879333409	36.256	0.7449	36.294	36.098	36.843	0.038044					34	20	3	0	0	0	0.024021	1	2773	2773		40.778	12.896	1	81157			11910	5677	8251	8267	13321	13321					0.03406383225569698
ELIFLDPRTTQ	11	Unmodified	_ELIFLDPRTTQ_					0	0	0		ATG4A|p.H281R|1|0.27|ENSG00000101844|chrX:108150179-108150179|A/G|missense_variant	ATG4A|p.H281R|1|0.27|ENSG00000101844|chrX:108150179-108150179|A/G|missense_variant	ATG4A|p.H281R|1|0.27|ENSG00000101844|chrX:108150179-108150179|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	445.2885437011719	3	444.910115	1331.70852	0.47888	0.00021306	-0.22679	-0.0001009	0.25209	0.00011216	445.2427853452859	89.579	1.7005	89.558	88.992	90.692	-0.021645					57	40	2	0	0	0	0.02477	1	11344	11344		12.433	4.0256	1	102500			11911	144	8252	8268	13322	13322					0.05593009423478179
ELIFVLTKK	9	Unmodified	_ELIFVLTKK_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.78173828125	2	545.847167	1089.67978	-0.26719	-0.00014585	0.055272	3.017E-05	-0.21192	-0.00011568	545.8471089416144	75.393	0.39942	75.218	75.029	75.429	-0.17548					12	9	2	0	0	0	0.024541	1	8890	8890		19.104	6.8967	1	68553			11912	5279	8253	8269	13323	13323					0.13852936584976305
ELIGFLQKS	9	Unmodified	_ELIGFLQKS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.81494140625	2	517.797675	1033.5808	-0.88873	-0.00046018	0.43552	0.00022551	-0.45321	-0.00023467	517.7975837817829	65.456	0.52953	65.183	64.9	65.43	-0.27283					35	14	4	0	0	0	0.024477	1	7676	7676		27.882	11.409	1	1355900			11913	1119	8254	8270	13324	13324					0.06534913620089355
ELIGGRNENTA	11	Unmodified	_ELIGGRNENTA_					0	0	0			REV__nc|ENSG00000146839|Q9Y493-5|ZAN	REV__nc|ENSG00000146839|Q9Y493-5|ZAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	587.2955322265625	2	587.296559	1172.57856	0.30554	0.00017945	-2.6954	-0.001583	-2.3899	-0.0014036	587.2949552399939	73.978	2.1464	73.988	73.677	75.823	0.0096512					165	53	5	0	0	0	0.99553	1	9013	9013		37.812	0.65241	1	50901000	+		11914	24514	8255	8271	13325	13325					-0.000821668556682198
ELIGHIRVL	9	Unmodified	_ELIGHIRVL_					0	0	0		MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2867431640625	2	525.326934	1048.63931	-1.0317	-0.00054196	0.66145	0.00034748	-0.37021	-0.00019448	525.3269736493712	60.687	0.56499	60.766	60.501	61.066	0.078884					27	14	3	0	0	0	0.024457	1	6869	6869		29.15	0	1	209160			11915	6220	8256	8272	13326	13326					0.1169401498523257
ELIGTCKGH	9	Unmodified	_ELIGTCKGH_					0	0	0		ENSG00000143476|ENST00000366991|DTL;nc|ENSG00000143476|Q9NZJ0-2|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.305908203125	2	479.244752	956.474951	-0.18404	-8.82E-05	-0.045822	-2.196E-05	-0.22986	-0.00011016	479.24435230649556	23.659	0.65374	23.735	23.392	24.046	0.076239					23	14	2	0	0	0	0.024263	1	886	886		51.335	10.557	1	24320			11916	5651	8257	8273	13327	13327					-0.005027454970331746
ELIGTDLTI	9	Unmodified	_ELIGTDLTI_					0	0	0			REV__ENSG00000158315|ENST00000372990|RHBDL2	REV__ENSG00000158315|ENST00000372990|RHBDL2	MSMS	OPSCC_39_ClassI_Rep-1	1	487.7730407714844	2	487.773865	973.533177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.708	1	85.708	85.208	86.208	0								0	0	0	0.10746	1	10756	10756		90.777	8.4716	1		+		11917	25189	8258	8274	13328	13328					0.04535214629231632
ELIHAILNL	9	Unmodified	_ELIHAILNL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7815551757812	2	518.313492	1034.61243	-0.61167	-0.00031704	-0.45808	-0.00023743	-1.0697	-0.00055446	518.3129833030206	79.131	0.70602	79.131	78.91	79.616	0					39	16	3	0	0	0	0.024457	1	9791	9791		29.15	1.2673	1	274130			11918	2021	8259	8275	13329	13329					0.09650906374031365
ELIHKHLD	8	Unmodified	_ELIHKHLD_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2640380859375	2	502.779816	1003.54508	-0.090662	-4.5583E-05	-1.6822	-0.00084576	-1.7728	-0.00089134	502.7788227355664	75.442	0.71062	75.266	74.986	75.696	-0.17548					34	17	3	0	0	0	0.027866	1	8969	8969		25.45	0	1	527660	+		11919	32494	8260	8276	13330	13330					0.04344876163088429
ELIHNESVSL	10	Unmodified	_ELIHNESVSL_					0	0	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.79736328125	2	570.798403	1139.58225	0.35506	0.00020267	-1.3729	-0.00078367	-1.0179	-0.00058101	570.7972346422104	57.52	0.94355	57.345	56.665	57.608	-0.1749					81	25	5	0	0	0	0.74632	1	6448	6448		64.207	0	1	2546400	+		11920	20327	8261	8277	13331	13331					0.018045029182076178
ELIHVQVL	8	Unmodified	_ELIHVQVL_					0	0	0			REV__ENST00000487903.5_1_13:113344735-113459305:+|nuORF	REV__ENST00000487903.5_1_13:113344735-113459305:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.7872009277344	2	475.78711	949.559667	0.58463	0.00027816	-0.66578	-0.00031677	-0.081147	-3.8609E-05	475.78675770961814	85.794	1.9967	85.599	84.467	86.464	-0.19508					98	46	4	0	0	0	1.0516	1	10361	10361		29.15	3.6994	1	5254000	+		11921	33626	8262	8278	13332	13332					0.08286948311229025
ELIINKKD	8	Unmodified	_ELIINKKD_					0	0	0			REV__CFL1|p.E42K|1|0.26|ENSG00000172757|chr11:65856122-65856122|C/T|missense_variant	REV__CFL1|p.E42K|1|0.26|ENSG00000172757|chr11:65856122-65856122|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.81365966796875	2	486.78985	971.565146	0.22317	0.00010864	-0.64056	-0.00031182	-0.41739	-0.00020318	486.7897616036138	21.437	0.23591	21.26	21.162	21.397	-0.17721					6	4	2	0	0	0	0.027866	1	670	670		16.473	4.2663	1	7634.6	+		11922	19301	8263	8279	13333	13333					0.07822627103041668
ELIISEVFKF	10	Unmodified	_ELIISEVFKF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2471923828125	3	408.900668	1223.68018	0.10292	4.2085E-05	3.89	0.0015906	3.9929	0.0016327	409.2364965435594	37.49	0.1829	37.427	37.305	37.488	-0.063385					5	3	2	0	0	0	0.03519	1	3032	3032		30.569	10.538	1	110320			11923	18521	8264	8280	13334	13334					0.07728311514165398
ELIKGAVRI	9	Unmodified	_ELIKGAVRI_					0	0	0			REV__ENST00000488401.5_1_3:183993962-184009147:+|nuORF	REV__ENST00000488401.5_1_3:183993962-184009147:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.9022521972656	2	499.821484	997.628415	-0.72293	-0.00036134	0.32231	0.0001611	-0.40062	-0.00020024	499.82131223628824	43.655	0.21944	43.655	43.475	43.695	0					9	5	2	0	0	0	0.024506	1	4111	4111		23.042	10.083	1	75961	+		11924	33643	8265	8281	13335	13335					0.1295061261095043
ELIKKVLGGH	10	Unmodified	_ELIKKVLGGH_					0	0	0			REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3274536132812	2	547.340041	1092.66553	-0.36898	-0.00020196	1.0718	0.00058664	0.70282	0.00038468	547.8420569059672	42.981	1.058	43.012	42.571	43.629	0.030827					36	28	2	0	0	0	0.03519	1	3872	3872		76.774	0	1	269460	+		11925	28567	8266	8282	13336	13336					0.12290284156711095
ELIKLLYYAR	10	Unmodified	_ELIKLLYYAR_					0	0	0		ENSG00000183696|ENST00000395564|UPP1;chr7:48089636-48090188|499|11.42|0.69|4.04|+|ENST00000436673|UPP1,UPP1	ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.3839721679688	2	641.381906	1280.74926	0.32425	0.00020797	4.1321	0.0026502	4.4563	0.0028582	641.384403061277	101.43	0.69904	101.31	100.98	101.68	-0.12576					51	15	4	0	0	0	1.1088	1	12589	12589		31.53	1.2121	1	942170			11926	9263	8267	8283	13337	13337					0.12011395533750147
ELIKNKVK	8	Unmodified	_ELIKNKVK_					0	0	0			REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2921142578125	2	486.316035	970.617516	0.16099	7.8291E-05	0.38519	0.00018732	0.54618	0.00026561	486.3165047027848	81.932	0.3163	81.801	81.666	81.982	-0.13075					14	7	3	0	0	0	0.027866	1	10168	10168		12.207	0	1	324190	+		11927	21045	8268	8284	13338	13338					0.13103210236658924
ELIKVEGKV	9	Unmodified	_ELIKVEGKV_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	507.813325	1013.6121	0.38905	0.00019756	-0.50591	-0.00025691	-0.11687	-5.9347E-05	507.81296611499045	65.731	0.98624	65.731	65.158	66.145	0					54	20	3	0	0	0	0.0242	1	7788	7788		60.118	5.3419	1	2309800			11928	6151	8269	8285	13339	13339					0.1058348665419544
ELILERIPI	9	Unmodified	_ELILERIPI_					0	0	0		ENST00000406845.1_1_21:24463107-24463425:-|nuORF	ENST00000406845.1_1_21:24463107-24463425:-|nuORF	ENST00000406845.1_1_21:24463107-24463425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3370971679688	2	548.342249	1094.66995	-0.26867	-0.00014732	-0.58401	-0.00032023	-0.85268	-0.00046756	548.3433064009055	67.997	0.68794	67.997	67.719	68.407	0					29	17	2	0	0	0	0.024427	1	8182	8182		42.396	0	1	204090			11929	13738	8270	8286	13340	13340					0.12639748579613297
ELILLLSVV	9	Unmodified	_ELILLLSVV_					0	0	0			REV__ENSG00000149100|ENST00000531120|EIF3M	REV__ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.8263244628906	2	499.828443	997.642334	0.38291	0.00019139	-3.8268	-0.0019127	-3.4439	-0.0017214	499.8265725967488	21.935	1.315	21.746	21.291	22.606	-0.18893					73	27	5	0	0	0	0.83071	1	754	754		37.159	1.5408	1	4886000	+		11930	24654	8271	8287	13341	13341					0.14341845319381719
ELINFKSF	8	Unmodified	_ELINFKSF_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	499.271293	996.528032	0.40524	0.00020232	-4.3302	-0.002162	-3.925	-0.0019596	499.2689990937074	39.542	0.84107	39.542	39.183	40.024	0					43	23	2	0	0	0	0.027866	1	3391	3391		24.203	4.8428	1	266930	+		11931	36970	8272	8288	13342	13342					0.02962955557291025
ELINFKSF	8	Unmodified	_ELINFKSF_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.82135009765625	2	499.271293	996.528032	-0.71652	-0.00035774	-3.4417	-0.0017183	-4.1582	-0.0020761	499.26929365242063	39.709	0.81989	39.733	39.455	40.275	0.023727					41	22	2	0	0	0	0.027866	1	3366	3366		15.642	4.1308	1	255850	+		11932	36970	8272	8288	13343	13343					0.02962955557291025
ELINLLLSI	9	Unmodified	_ELINLLLSI_					0	0	0			REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2880859375	2	514.323525	1026.6325	-0.69426	-0.00035707	-2.3292	-0.001198	-3.0234	-0.001555	514.3222139292915	40.427	0.65217	40.277	39.969	40.621	-0.1497					31	17	3	0	0	0	0.024257	1	3461	3461		67.494	12.717	1	1527500	+		11933	23534	8273	8289	13344	13344					0.12024657314009346
ELINLLLSI	9	Unmodified	_ELINLLLSI_					0	0	0			REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	REV__GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2886352539062	2	514.323525	1026.6325	-1.3417	-0.00069007	-1.7312	-0.00089041	-3.0729	-0.0015805	514.3223641267541	40.593	0.68803	40.362	40.083	40.771	-0.23029					34	18	3	0	0	0	0.024367	1	3479	3479		36.447	0.82846	1	1303700	+		11934	23534	8273	8289	13345	13345					0.12024657314009346
ELIPPPSSI	9	Unmodified	_ELIPPPSSI_					0	0	0			REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.75347900390625	2	476.771126	951.527698	1.454	0.00069324	-3.9022	-0.0018604	-2.4481	-0.0011672	476.76909230552326	19.455	0.33256	19.455	19.268	19.6	0					10	6	2	0	0	0	0.024436	1	408	408		38.806	1.647	1	26686	+		11935	24240	8274	8290	13346	13346					0.049995358374417265
ELIPSVVVM	9	Unmodified	_ELIPSVVVM_					0	0	0			REV__ENSG00000100024|ENST00000326010|UPB1	REV__ENSG00000100024|ENST00000326010|UPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7825927734375	2	493.783179	985.551804	-0.49094	-0.00024242	0.91803	0.00045331	0.4271	0.00021089	493.783589375499	82.62	0.89951	82.646	82.273	83.172	0.025879					52	20	4	0	0	0	0.78069	1	10268	10268		40.573	0	1	779320	+		11936	21034	8275	8291	13347	13347					0.058450529994502176
ELIPVWLV	8	Unmodified	_ELIPVWLV_					0	0	0			REV__ENST00000519752.1_1_5:156997722-157002671:-|nuORF	REV__ENST00000519752.1_1_5:156997722-157002671:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.301025390625	2	484.794404	967.574254	-0.35945	-0.00017426	1.7542	0.0008504	1.3947	0.00067615	484.79519858144334	54.741	0.78777	54.839	54.361	55.148	0.098015					42	22	2	0	0	0	0.027866	1	5930	5930		19.36	0	1	1204800	+		11937	34271	8276	8292	13348	13348					0.08917020459375635
ELIQLQPGEG	10	Unmodified	_ELIQLQPGEG_					0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2445068359375	2	542.287671	1082.56079	-0.86793	-0.00047067	2.8414	0.0015409	1.9735	0.0010702	542.7912271951604	67.726	0.30013	67.487	67.289	67.589	-0.23814					11	6	3	0	0	0	0.03519	1	7790	7790		42.864	0	1	108900	+		11938	21642	8277	8293	13349	13349					0.02281117889469897
ELIRALVK	8	Unmodified	_ELIRALVK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.310302734375	2	471.310752	940.606951	0.16549	7.7998E-05	-0.71405	-0.00033654	-0.54855	-0.00025854	471.31033490871096	48.289	1.2648	48.356	48.043	49.308	0.066795					95	34	5	0	0	0	0.56592	1	4852	4852		79.451	2.6044	1	7919300			11939	3717	8278	8294	13350	13350					0.13427227582224077
ELIRERLT	8	Unmodified	_ELIRERLT_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2696533203125	2	515.306198	1028.59784	-0.89571	-0.00046156	0.50863	0.0002621	-0.38708	-0.00019947	515.3064630933355	50.638	0.45219	50.719	50.543	50.995	0.08099					29	12	3	0	0	0	0.027866	1	5291	5291		38.806	1.647	1	701530			11940	2463	8279	8295	13351	13351					0.08468834225891442
ELIRKISN	8	Unmodified	_ELIRKISN_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2919616699219	2	486.795466	971.57638	0.9484	0.00046168	3.2794	0.0015964	4.2278	0.0020581	486.79670932372636	59.459	0.60346	59.459	59.108	59.711	0					50	15	4	0	0	0	0.027866	1	6826	6826		31.53	0	1	4091700			11941	8709	8280	8296	13352	13352					0.08945449197176458
ELIRKRELR	9	Unmodified	_ELIRKRELR_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9227294921875	3	404.922689	1211.74624	0.50474	0.00020438	-0.80421	-0.00032564	-0.29947	-0.00012126	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	0.96224	1	1302	1302		28.081	2.1898	1	35253000			11942	4629	8281	8297	13353	13353					0.14883565199579607
ELISVVILL	9	Unmodified	_ELISVVILL_					0	0	0			REV__ENSG00000168944|ENST00000306467|CEP120	REV__ENSG00000168944|ENST00000306467|CEP120	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.8267822265625	2	499.828443	997.642334	0.38291	0.00019139	-3.8268	-0.0019127	-3.4439	-0.0017214	499.8265725967488	21.935	1.315	21.746	21.291	22.606	-0.18893					73	27	5	0	0	0	0.78069	1	720	720		40.573	1.7665	1	4886000	+		11943	26305	8282	8298	13354	13354					0.14341845319381719
ELISVVILL	9	Unmodified	_ELISVVILL_					0	0	0			REV__ENSG00000168944|ENST00000306467|CEP120	REV__ENSG00000168944|ENST00000306467|CEP120	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.82672119140625	2	499.828443	997.642334	-0.78252	-0.00039112	-2.7454	-0.0013722	-3.5279	-0.0017634	499.82709477009644	21.987	1.2319	21.785	21.421	22.653	-0.20199					69	25	5	0	0	0	0.4855	1	729	729		60.294	12.378	1	4524900	+		11944	26305	8282	8298	13355	13355					0.14341845319381719
ELITFHDHA	9	Unmodified	_ELITFHDHA_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.245849609375	2	541.766906	1081.51926	-0.89307	-0.00048384	-3.9022	-0.0021141	-4.7953	-0.0025979	542.2659408180368	89.683	0.45687	89.683	89.44	89.896	0					11	10	2	0	0	0	0.024457	1	11327	11327		45.952	21.749	1	22839			11945	10175	8283	8299	13356	13356					-0.018240180791963212
ELITKAVAA	9	Unmodified	_ELITKAVAA_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.2789611816406	2	458.279118	914.543683	-0.70645	-0.00032375	-0.36049	-0.00016521	-1.0669	-0.00048896	458.27894439908016	44.082	1.9418	43.978	43.544	45.486	-0.10468					135	52	4	0	0	0	0.021872	6	4072	4064;4072;4084;4096;4110;4122		148.04	39.955	1	23698000			11946	7808	8284	8300	13357;13358;13359;13360;13361;13362	13358					0.08299242074326685
ELITKAVAA	9	Unmodified	_ELITKAVAA_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.27862548828125	2	458.279118	914.543683	-1.0017	-0.00045904	-0.18659	-8.551E-05	-1.1883	-0.00054455	458.2790211288512	44.236	1.6722	43.992	43.593	45.266	-0.2444					116	44	5	0	0	0	0.03849	6	4079	4079;4089;4101;4113;4126;4141		134.81	38.62	1	23577000			11947	7808	8284	8300	13363;13364;13365;13366;13367;13368	13363					0.08299242074326685
ELITKAVAA	9	Unmodified	_ELITKAVAA_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.27813720703125	2	458.279118	914.543683	-0.92217	-0.00042261	-0.058862	-2.6975E-05	-0.98103	-0.00044958	458.27907835376647	44.212	1.4831	43.993	43.597	45.081	-0.21939					104	39	4	0	0	0	0.014988	6	4083	4072;4083;4095;4108;4122;4135		161.9	40.334	1	22101000			11948	7808	8284	8300	13369;13370;13371;13372;13373;13374	13370					0.08299242074326685
ELITKFQV	8	Unmodified	_ELITKFQV_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7538146972656	2	489.286943	976.559333	1.285	0.00062871	-3.6295	-0.0017759	-2.3445	-0.0011472	489.28486381999153	51.562	0.38184	51.378	51.179	51.561	-0.18404					13	9	2	0	0	0	0.027866	1	5287	5287		45.952	22.909	1	76289			11949	6256	8285	8301	13375	13375					0.0701152859138574
ELITKKENQ	9	Unmodified	_ELITKKENQ_					0	0	0			REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.3340454101562	2	551.808771	1101.60299	3.3144	0.0018289	0.48696	0.00026871	3.8013	0.0020976	551.8092704446037	17.613	0.24768	17.613	17.449	17.697	0					6	4	2	0	0	0	0.024466	1	186	186		31.53	22.347	1	19907	+		11950	25786	8286	8302	13376	13376					0.05625093297862804
ELITKKENQ	9	Unmodified	_ELITKKENQ_					0	0	0			REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.808771	1101.60299	0.91246	0.0005035	1.2498	0.00068966	2.1623	0.0011932	551.808709812824	18.004	0.44267	17.848	17.705	18.148	-0.15637	0.11703	0.0006112	NaN	31.53	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16480	+		11951	25786	8286	8302							0.05625093297862804
ELITNQSIN	9	Unmodified	_ELITNQSIN_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2705688476562	2	516.272021	1030.52949	-0.13397	-6.9165E-05	-3.387	-0.0017486	-3.5209	-0.0018178	516.27052545192	51.059	1.5259	51.059	50.21	51.736	0					100	43	5	0	0	0	0.32811	1	5423	5423		71.877	5.4482	1	6683900	+		11952	22508	8287	8303	13377	13377					0.01544544855391905
ELIVHHPE	8	Unmodified	_ELIVHHPE_					0	0	0			REV__ENSG00000165188|ENST00000489339|RNF183	REV__ENSG00000165188|ENST00000489339|RNF183	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7952880859375	2	487.258717	972.50288	-0.55366	-0.00026978	3.0707	0.0014962	2.5171	0.0012265	487.26054768338065	31.005	0.49334	30.764	30.541	31.034	-0.24109					19	11	3	0	0	0	0.027866	1	2012	2012		12.959	0	1	110320	+		11953	25853	8288	8304	13378	13378					0.015529007547115725
ELIVIIELD	9	Unmodified	_ELIVIIELD_					0	0	0			REV__nc|ENSG00000187486|Q14654-2|KCNJ11	REV__nc|ENSG00000187486|Q14654-2|KCNJ11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2918090820312	2	528.81299	1055.61143	0.46231	0.00024448	3.548	0.0018762	4.0103	0.0021207	528.8149392953688	54.48	0.20184	54.578	54.458	54.66	0.098015					8	5	2	0	0	0	0.024323	1	5902	5902		44.117	0	1	161300	+		11954	27933	8289	8305	13379	13379					0.08584647214479446
ELIVSVVDP	9	Unmodified	_ELIVSVVDP_					0	0	0			REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7745361328125	2	485.776408	969.538263	-0.71828	-0.00034892	0.87608	0.00042558	0.1578	7.6656E-05	485.77750079398936	25.713	1.042	25.679	25.351	26.393	-0.034395					51	24	4	0	0	0	0.83071	1	1227	1227		37.159	5.2042	1	2338700	+		11955	37018	8290	8306	13380	13380					0.05227518491858518
ELIVTRLAM	9	Unmodified	_ELIVTRLAM_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3140258789062	2	523.307352	1044.60015	0.44105	0.00023081	0.88789	0.00046464	1.3289	0.00069545	523.809658375293	32.338	0.13234	32.145	32.073	32.205	-0.19261					4	2	2	0	0	0	0.024506	1	2217	2217		23.042	0	1	36793	+		11956	24671	8291	8307	13381	13381					0.07963546639325614
ELIWPEKGTE	10	Unmodified	_ELIWPEKGTE_					0	0	0			REV__ENST00000452075.7_1_10:43018634-43019093:-|nuORF	REV__ENST00000452075.7_1_10:43018634-43019093:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.87554931640625	3	401.208161	1200.60265	0.091144	3.6568E-05	3.1416	0.0012604	3.2328	0.001297	401.2093363784863	37.514	0.58387	37.295	36.807	37.39	-0.2195					25	14	3	0	0	0	0.03519	1	3011	3011		26.75	4.1881	1	984430	+		11957	32730	8292	8308	13382	13382					0.010376735780027957
ELIYGTYYSM	10	Unmodified	_ELIYGTYYSM_					0	0	0			REV__ENST00000359513.8_1_11:46671851-46677808:+|nuORF	REV__ENST00000359513.8_1_11:46671851-46677808:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2455139160156	3	413.858252	1238.55293	-0.50597	-0.0002094	4.1543	0.0017193	3.6483	0.0015099	413.85965360604996	31.081	0.60234	30.896	30.533	31.136	-0.18503					20	14	2	0	0	0	0.03519	1	2053	2053		27.047	9.8806	1	67206	+		11958	30881	8293	8309	13383	13383					-0.056807774223216256
ELIYLFIE	8	Unmodified	_ELIYLFIE_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2643432617188	2	520.289151	1038.56375	0.13318	6.9292E-05	-3.7189	-0.0019349	-3.5857	-0.0018656	520.2869313353855	55.771	0.46756	55.771	55.39	55.858	0					15	12	2	0	0	0	0.027866	1	6182	6182		33.516	17.042	1	123520	+		11959	20345	8294	8310	13384	13384					0.04600993014264532
ELKAEPRSL	9	Unmodified	_ELKAEPRSL_					0	0	0		ENSG00000236782|ENST00000433939|ZNF593OS	ENSG00000236782|ENST00000433939|ZNF593OS	ENSG00000236782|ENST00000433939|ZNF593OS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3247680664062	2	521.798206	1041.58186	-0.1947	-0.00010159	-1.7243	-0.00089974	-1.919	-0.0010013	521.7973737289402	49.504	0.40649	49.504	49.324	49.731	0					19	10	2	0	0	0	0.024319	1	5108	5108		31.53	0	1	829510			11960	10742	8295	8311	13385	13385					0.06273127989015848
ELKAGLRPQ	9	Unmodified	_ELKAGLRPQ_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2718200683594	2	506.300916	1010.58728	-0.37801	-0.00019139	0.28061	0.00014208	-0.097396	-4.9311E-05	506.3002745232624	31.349	0.25352	31.361	31.17	31.424	0.011797					8	5	2	0	0	0	0.024209	1	2056	2056		31.53	1.0262	1	56416	+		11961	24084	8296	8312	13386	13386					0.0824085157147465
ELKAGLRPQ	9	Unmodified	_ELKAGLRPQ_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.300916	1010.58728	-0.22801	-0.00011544	0.79195	0.00040096	0.56394	0.00028552	506.30017780706265	31.118	0.29362	31.187	30.955	31.248	0.068962	-0.11702	2.9779E-05	NaN	31.53	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62106	+		11962	24084	8296	8312							0.0824085157147465
ELKALRLL	8	Unmodified	_ELKALRLL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.8043212890625	2	478.318577	954.622602	0.026183	1.2524E-05	0.16102	7.702E-05	0.18721	8.9544E-05	478.31845657930694	69.982	0.66594	69.715	69.493	70.159	-0.26725					37	15	3	0	0	0	0.027866	1	8178	8178		47.916	3.3845	1	288480			11963	1686;4257;37903	8297	8313	13387	13387					0.14347514099279124
ELKAMPITLHL	11	Unmodified	_ELKAMPITLHL_					0	0	0		nc|ENSG00000171703|Q15560-2|TCEA2;ENSG00000171703|ENST00000343484|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3687744140625	2	633.367941	1264.72133	1.1238	0.00071176	0.79089	0.00050092	1.9147	0.0012127	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	0.79111	2	12147	12147;12171		58.23	26.7	1	8250400			11964	8183	8298	8314	13388;13389	13388					0.09955749282016768
ELKAMPITLHL	11	Unmodified	_ELKAMPITLHL_					0	0	0		nc|ENSG00000171703|Q15560-2|TCEA2;ENSG00000171703|ENST00000343484|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3695678710938	2	633.367941	1264.72133	-0.5109	-0.00032359	2.3809	0.001508	1.87	0.0011844	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.93459	3	11851	11815;11839;11851		49.536	8.7579	1	9245900			11965	8183	8298	8314	13390;13391;13392	13392					0.09955749282016768
ELKAMPITLHL	11	Unmodified	_ELKAMPITLHL_					0	0	0		nc|ENSG00000171703|Q15560-2|TCEA2;ENSG00000171703|ENST00000343484|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3692626953125	2	633.367941	1264.72133	0.30625	0.00019397	1.4625	0.0009263	1.7688	0.0011203	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	1.0292	1	11835	11835		30.318	4.7437	1	9528000			11966	8183	8298	8314	13393	13393					0.09955749282016768
ELKAMPITLHL	11	Unmodified	_ELKAMPITLHL_					0	0	0		nc|ENSG00000171703|Q15560-2|TCEA2;ENSG00000171703|ENST00000343484|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.37109375	2	633.367941	1264.72133	-0.4938	-0.00031276	2.181	0.0013814	1.6872	0.0010686	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.96599	1	11881	11881		44.377	5.1244	1	9845500			11967	8183	8298	8314	13394	13394					0.09955749282016768
ELKANYGLV	9	Unmodified	_ELKANYGLV_					0	0	0		nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7517395019531	2	503.782025	1005.5495	-0.36738	-0.00018508	-2.0303	-0.0010228	-2.3977	-0.0012079	503.78148724988193	34.004	0.18555	33.797	33.71	33.895	-0.20696					5	4	2	0	0	0	0.024447	1	2476	2476		25.574	0.12388	1	37630			11968	6996	8299	8315	13395	13395					0.046943405859906306
ELKARAEKD	9	Unmodified	_ELKARAEKD_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3161010742188	2	530.293288	1058.57202	1.0355	0.00054912	-1.0777	-0.00057151	-0.042218	-2.2388E-05	530.2928877207805	36.159	0.32968	35.961	35.843	36.172	-0.19829					11	8	2	0	0	0	0.024292	1	2829	2829		58.782	4.0056	1	134450	+		11969	25017	8300	8316	13396	13396					0.04507939983614051
ELKARISASA	10	Unmodified	_ELKARISASA_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.303466796875	2	523.303655	1044.59276	0.13302	6.9608E-05	-1.6088	-0.00084187	-1.4758	-0.00077227	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	1.0816	2	11098	11098;11170		35.152	5.982	1	10615000			11970	3031	8301	8317	13397;13398	13397					0.07224530363282611
ELKARISASA	10	Unmodified	_ELKARISASA_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3038940429688	2	523.303655	1044.59276	-1.1808	-0.0006179	1.486	0.00077761	0.30519	0.00015971	523.3043344110223	90.238	1.0253	90.083	89.781	90.806	-0.1552					44	24	2	0	0	0	1.0816	1	11050	11050		35.152	2.3396	1	1555500			11971	3031	8301	8317	13399	13399					0.07224530363282611
ELKASALA	8	Unmodified	_ELKASALA_					0	0	0			REV__nc|ENSG00000160179|P45844-8|ABCG1	REV__nc|ENSG00000160179|P45844-8|ABCG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5365905761719	2	401.737086	801.459619	1.289	0.00051783	-0.51008	-0.00020492	0.77889	0.00031291	401.73679079021105	32.796	0.64637	32.604	32.377	33.024	-0.19262					32	15	3	0	0	0	0.027866	1	2272	2272		27.882	0	1	641430	+		11972	36833	8302	8318	13400	13400					0.05094710977414252
ELKCPVCLL	9	Unmodified	_ELKCPVCLL_					0	0	0		RNF181|p.C94Sfs*24|1|0.11|ENSG00000168894|chr2:85596879-85596883|TGCCT/-|frameshift_variant;ENSG00000168894|ENST00000306368|RNF181	RNF181|p.C94Sfs*24|1|0.11|ENSG00000168894|chr2:85596879-85596883|TGCCT/-|frameshift_variant	RNF181|p.C94Sfs*24|1|0.11|ENSG00000168894|chr2:85596879-85596883|TGCCT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8036804199219	2	509.277206	1016.53986	-0.64381	-0.00032788	0.070171	3.5736E-05	-0.57364	-0.00029214	509.27745537344936	85.037	0.95658	85.062	84.579	85.536	0.025528					48	22	3	0	0	0	0.024344	1	10597	10597		37.812	0	1	234560			11973	7877	8303	8319	13401	13401					0.03225112984614498
ELKDEFEQQL	10	Unmodified	_ELKDEFEQQL_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.27130126953125	3	426.878592	1277.61395	-1.108	-0.00047296	-2.7949	-0.0011931	-3.9028	-0.001666	426.87743888355067	39.663	0.25307	39.551	39.5	39.754	-0.11223					9	6	2	0	0	0	0.03519	1	3413	3413		20.03	0	1	42280	+		11974	28192	8304	8320	13402	13402					-0.013755491185065694
ELKDKPLG	8	Unmodified	_ELKDKPLG_					0	0	0		ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.287353515625	2	450.263468	898.512382	-0.16123	-7.2595E-05	0.076698	3.4534E-05	-0.084529	-3.806E-05	450.26209803665745	37.28	0.8544	37.071	36.726	37.58	-0.2092					30	21	2	0	0	0	0.027866	1	2945	2945		76.847	0	1	132020			11975	2346	8305	8321	13403	13403					0.059066690402460154
ELKEEEKAFV	10	Unmodified	_ELKEEEKAFV_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.8878173828125	3	407.883566	1220.62887	-0.90132	-0.00036763	2.3964	0.00097744	1.4951	0.00060981	407.8844297880841	33.291	0.67788	33.125	32.839	33.517	-0.16565					34	16	3	0	0	0	0.03519	1	2401	2401		26.063	12.555	1	457750			11976	6235	8306	8322	13404	13404					0.027379427494679476
ELKEKEKSEK	10	Unmodified	_ELKEKEKSEK_					0	0	0			REV__ENSG00000198825|ENST00000650623|INPP5F	REV__ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.190185546875	3	416.566237	1246.67688	0.39692	0.00016534	1.4983	0.00062413	1.8952	0.00078947	416.5669497892075	50.855	0.52685	50.743	50.563	51.09	-0.11163					19	13	2	0	0	0	0.03519	1	5221	5221		23.378	0	1	133100	+		11977	28490	8307	8323	13405	13405					0.063410166695121
ELKEKIAYL	9	Unmodified	_ELKEKIAYL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.7666625976562	2	553.826432	1105.63831	-0.063269	-3.504E-05	-0.50538	-0.00027989	-0.56865	-0.00031493	553.8258320690303	54.639	0.5351	54.409	54.213	54.748	-0.23087					36	14	3	0	0	0	0.023655	1	5803	5803		79.713	13.283	1	1844000			11978	5638	8308	8324	13406	13406					0.08971755825655237
ELKEKIAYL	9	Unmodified	_ELKEKIAYL_					0	0	0		nc|ENSG00000143367|Q9NNX1-3|TUFT1;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.826432	1105.63831	0.7093	0.00039283	-1.4905	-0.0008255	-0.78124	-0.00043267	553.825416176292	54.585	0.63361	54.379	54.197	54.831	-0.20613	-0.017884	-0.00074527	NaN	79.713	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1562500			11979	5638	8308	8324							0.08971755825655237
ELKEKKKEL	9	Unmodified	_ELKEKKKEL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.8504638671875	2	572.850438	1143.68632	1.0476	0.00060011	-1.1953	-0.0006847	-0.14767	-8.4594E-05	572.8497388899385	18.085	0.69034	17.929	17.705	18.396	-0.15637					38	13	4	0	0	0	0.013924	1	262	262		167.23	25.708	1	1862300			11980	1482	8309	8325	13407	13407					0.12022829745728814
ELKEKKKEL	9	Unmodified	_ELKEKKKEL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.8511352539062	2	572.850438	1143.68632	-0.025051	-1.435E-05	-0.26767	-0.00015333	-0.29272	-0.00016768	572.8502706145961	18.142	0.8424	17.935	17.664	18.507	-0.20669					42	16	4	0	0	0	0.094442	1	247	247		112.41	11.158	1	1777800			11981	1482	8309	8325	13408	13408					0.12022829745728814
ELKEKKKEL	9	Unmodified	_ELKEKKKEL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.8505859375	2	572.850438	1143.68632	3.5059	0.0020083	-3.6574	-0.0020951	-0.15153	-8.6804E-05	572.8482381729805	18.142	0.79698	17.899	17.677	18.474	-0.24256					37	15	4	0	0	0	0.013946	1	243	243		181.41	32.42	1	757570			11982	1482	8309	8325	13409	13409					0.12022829745728814
ELKELFILD	9	Unmodified	_ELKELFILD_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3397827148438	2	560.31844	1118.62233	-0.13886	-7.7806E-05	1.6922	0.00094817	1.5533	0.00087036	560.8189508924519	101.16	0.20763	101.16	101.08	101.28	0					6	4	2	0	0	0	0.024466	1	12966	12966		39.253	0	1	99004			11983	1806	8310	8326	13410	13410					0.06776049588756905
ELKENKKWAR	10	Unmodified	_ELKENKKWAR_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7801208496094	3	434.582333	1300.72517	0.01052	4.5717E-06	0.4484	0.00019487	0.45892	0.00019944	434.5828445584568	42.218	0.15659	42.095	41.998	42.155	-0.12299					5	3	2	0	0	0	0.03519	1	3775	3775		15.333	0	1	36905	+		11984	23365	8311	8327	13411	13411					0.0868355510008314
ELKEPLILQ	9	Unmodified	_ELKEPLILQ_					0	0	0		ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7761840820312	2	541.826432	1081.63831	-0.59181	-0.00032066	0.37709	0.00020432	-0.21472	-0.00011634	541.8264828837464	67.4	0.753	67.424	67.071	67.824	0.023911					28	18	2	0	0	0	0.022657	1	8010	8010		110.12	19.343	1	985930			11985	11394	8312	8328	13412	13412					0.10075755825687338
ELKEPLILQ	9	Unmodified	_ELKEPLILQ_					0	0	0		ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.826432	1081.63831	0.33605	0.00018208	-0.60841	-0.00032965	-0.27236	-0.00014757	541.8260615597478	67.681	0.58731	67.425	67.113	67.7	-0.25516	0.04458	-0.00069005	NaN	110.12	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380720			11986	11394	8312	8328							0.10075755825687338
ELKEPLILQ	9	Unmodified	_ELKEPLILQ_					0	0	0		ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.826432	1081.63831	-0.3347	-0.00018135	-0.072106	-3.9069E-05	-0.40681	-0.00022042	541.8263527057878	67.628	0.70385	67.394	67.053	67.756	-0.23376	0.013016	-0.00010888	NaN	110.12	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428960			11987	11394	8312	8328							0.10075755825687338
ELKEPLILQ	9	Unmodified	_ELKEPLILQ_					0	0	0		ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	ENST00000256151.7_1_12:82746644-82746788:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.826432	1081.63831	-1.0555	-0.00057188	0.67452	0.00036547	-0.38094	-0.0002064	541.826682708813	67.594	0.6306	67.355	67.038	67.669	-0.23814	-0.025454	0.00070021	NaN	110.12	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495730			11988	11394	8312	8328							0.10075755825687338
ELKERKSSL	9	Unmodified	_ELKERKSSL_					0	0	0		ENSG00000151725|ENST00000281453|CENPU;nc|ENSG00000151725|Q71F23-2|CENPU	ENSG00000151725|ENST00000281453|CENPU	ENSG00000151725|ENST00000281453|CENPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.315673828125	2	545.316763	1088.61897	-1.0475	-0.0005712	-0.16683	-9.0973E-05	-1.2143	-0.00066218	545.3164837593006	20.759	0.8418	20.536	20.266	21.108	-0.22344					41	16	4	0	0	0	0.45795	1	559	559		62.107	3.8775	1	287740			11989	6226	8313	8329	13413	13413					0.07820799534783873
ELKFKTGL	8	Unmodified	_ELKFKTGL_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.28192138671875	2	468.28166	934.548768	-0.40387	-0.00018912	0.13394	6.2721E-05	-0.26993	-0.0001264	468.2815746059036	45.24	0.83235	45.141	44.906	45.738	-0.099445					58	23	4	0	0	0	0.42327	1	4284	4284		94.006	20.032	1	4780600			11990	7622	8314	8330	13414	13414					0.07887545936955576
ELKFKTGL	8	Unmodified	_ELKFKTGL_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.281494140625	2	468.28166	934.548768	0.042654	1.9974E-05	-0.52419	-0.00024547	-0.48154	-0.0002255	468.2812797404426	45.458	0.91881	45.206	44.905	45.824	-0.25252					54	25	4	0	0	0	0.30053	3	4285	4285;4297;4307		111.65	18.967	1	4784500			11991	7622	8314	8330	13415;13416;13417	13415					0.07887545936955576
ELKFKTGL	8	Unmodified	_ELKFKTGL_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2817077636719	2	468.28166	934.548768	-0.71845	-0.00033644	0.8137	0.00038104	0.095247	4.4602E-05	468.2817196722353	45.38	1.0857	45.169	44.95	46.035	-0.21109					71	30	4	0	0	0	0.34573	2	4278	4278;4289		104.75	13.97	1	5079500			11992	7622	8314	8330	13418;13419	13418					0.07887545936955576
ELKFLIADKG	10	Unmodified	_ELKFLIADKG_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.329833984375	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0909	1	11333	11333		33.922	1.1092	1	19210000	+		11993	21675	8315	8331	13420	13420					0.0881915819995811
ELKFLQKVE	9	Unmodified	_ELKFLQKVE_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3292846679688	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.87816	1	11637	11637		33.922	3.6039	1	14057000			11994	4994	8316	8332	13421	13421					0.08819158199980848
ELKFLQKVE	9	Unmodified	_ELKFLQKVE_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3299560546875	2	567.331882	1132.64921	-0.25865	-0.00014674	-2.6582	-0.0015081	-2.9169	-0.0016548	567.3302396632416	88.151	1.3013	87.981	87.036	88.338	-0.17053					97	31	4	0	0	0	0.84115	1	10726	10726		36.447	1.2947	1	1743200			11995	4994	8316	8332	13422	13422					0.08819158199980848
ELKFPLNRPI	10	Unmodified	_ELKFPLNRPI_					0	0	0			REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8865051269531	3	409.580041	1225.71829	0.38986	0.00015968	-3.95	-0.0016178	-3.5601	-0.0014582	409.57829018267125	34.012	0.85724	34.008	33.753	34.61	-0.0045624					33	21	2	0	0	0	0.03519	1	2546	2546		25.126	0	1	251730	+		11996	29040	8317	8333	13423	13423					0.11446242219517444
ELKFPLNRPI	10	Unmodified	_ELKFPLNRPI_					0	0	0			REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	409.580041	1225.71829	0.67866	0.00027797	-4.5399	-0.0018594	-3.8612	-0.0015815	409.5782049338876	34.144	0.54726	34.144	33.932	34.479	0	0.060188	-0.00021847	NaN	19.263	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188600	+		11997	29040	8317	8333							0.11446242219517444
ELKGLPSDL	9	Unmodified	_ELKGLPSDL_					0	0	0			REV__ENST00000482547.1_1_10:131265539-131334642:+|nuORF	REV__ENST00000482547.1_1_10:131265539-131334642:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2952880859375	2	486.274032	970.533512	1.3441	0.00065362	-3.5529	-0.0017277	-2.2087	-0.001074	486.2724332420288	25.087	0.30187	24.915	24.732	25.034	-0.17151					9	6	2	0	0	0	0.024495	1	1120	1120		26.693	1.1189	1	22570	+		11998	26470	8318	8334	13424	13424					0.0470663434908829
ELKGLPSDL	9	Unmodified	_ELKGLPSDL_					0	0	0			REV__ENST00000482547.1_1_10:131265539-131334642:+|nuORF	REV__ENST00000482547.1_1_10:131265539-131334642:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.274032	970.533512	-0.15813	-7.6894E-05	-3.0192	-0.0014682	-3.1773	-0.0015451	486.2728309683626	25.061	0.30559	24.886	24.688	24.993	-0.17484	-0.014482	0.00040325	NaN	26.693	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41285	+		11999	26470	8318	8334							0.0470663434908829
ELKGNRLEA	9	Unmodified	_ELKGNRLEA_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2881469726562	2	515.288005	1028.56146	-0.55678	-0.0002869	0.027367	1.4102E-05	-0.52941	-0.0002728	515.2880152450967	40.101	1.9114	39.951	39.553	41.464	-0.1497					97	50	4	0	0	0	0.67687	1	3473	3473		47.657	1.6851	1	21703000			12000	8104	8319	8335	13425	13425					0.04831957329201941
ELKIAYQL	8	Unmodified	_ELKIAYQL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.28662109375	2	489.286943	976.559333	-0.35602	-0.0001742	-0.0059129	-2.8931E-06	-0.36194	-0.00017709	489.28682976067887	63.416	1.2148	63.188	62.851	64.066	-0.22773					82	30	4	0	0	0	0.12879	4	7143	7143;7155;7167;7179		152.63	9.614	1	7231000			12001	9337	8320	8336	13426;13427;13428;13429	13426					0.07011528591374372
ELKIAYQL	8	Unmodified	_ELKIAYQL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.28692626953125	2	489.286943	976.559333	-0.055343	-2.7079E-05	-0.41283	-0.00020199	-0.46818	-0.00022907	489.28663288298486	63.363	1.2931	63.179	62.83	64.124	-0.18386					84	32	4	0	0	0	0.11227	2	7181	7156;7181		157.21	9.614	1	7704800			12002	9337	8320	8336	13430;13431	13431					0.07011528591374372
ELKIAYQL	8	Unmodified	_ELKIAYQL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2867736816406	2	489.286943	976.559333	0.59109	0.00028921	-0.99	-0.00048439	-0.3989	-0.00019518	489.28636273818836	63.478	1.2323	63.22	62.917	64.15	-0.25824					88	31	4	0	0	0	0.21344	1	7168	7168		138.24	4.4296	1	8215000			12003	9337	8320	8336	13432	13432					0.07011528591374372
ELKIKRSLFTY	11	Unmodified	_ELKIKRSLFTY_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.6083984375	3	466.609889	1396.80784	0.024909	1.1623E-05	-3.9796	-0.0018569	-3.9547	-0.0018453	466.60793572858927	100.17	2.0135	100.17	99.98	101.99	0					84	47	2	0	0	0	1.0501	1	12869	12869		25.068	3.2874	1	846240			12004	9557	8321	8337	13433	13433					0.12530452108217105
ELKKAGRRYG	10	Unmodified	_ELKKAGRRYG_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3431396484375	2	589.343646	1176.67274	-1.3447	-0.00079247	-0.0816	-4.809E-05	-1.4263	-0.00084056	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.1088	1	11929	11929		31.53	2.3598	1	13724000	+		12005	19939	8322	8338	13434	13434					0.09147016757151505
ELKKDPPT	8	Unmodified	_ELKKDPPT_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.256103515625	2	464.260925	926.507297	0.53056	0.00024632	0.27635	0.0001283	0.80691	0.00037462	464.2608427274881	59.625	0.74106	59.711	59.277	60.018	0.085682					33	19	2	0	0	0	0.027866	1	6683	6683		32.812	0	1	935380	+		12006	23824	8323	8339	13435	13435					0.04110365177609765
ELKKELSL	8	Unmodified	_ELKKELSL_					0	0	0			REV__ENSG00000163491|ENST00000691995|NEK10	REV__ENSG00000163491|ENST00000691995|NEK10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2922668457031	2	480.292225	958.569897	-0.21393	-0.00010275	-0.60719	-0.00029163	-0.82112	-0.00039438	480.29189697454643	31.641	1.0486	31.489	31.161	32.21	-0.15231					82	25	5	0	0	0	0.30053	1	2128	2128		111.65	8.8749	1	10654000	+		12007	25574	8324	8340	13436	13436					0.08895511245816579
ELKKEVTL	8	Unmodified	_ELKKEVTL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000531016.1_1_11:47836976-47837554:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2920227050781	2	480.292225	958.569897	0.32561	0.00015639	-1.0658	-0.00051189	-0.74019	-0.00035551	480.29169514892175	31.667	1.1802	31.426	31.073	32.253	-0.24109					87	28	5	0	0	0	0.4075	1	2146	2146		96.19	8.4361	1	11621000			12008	1009	8325	8341	13437	13437					0.08895511245816579
ELKKGATL	8	Unmodified	_ELKKGATL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000562784.1_1_15:72501984-72509791:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.26611328125	2	430.26601	858.517468	2.3768	0.0010227	-2.3235	-0.00099972	0.053309	2.2937E-05	430.2648983943194	24.142	1.0522	23.961	23.715	24.767	-0.18089					41	23	2	0	0	0	0.71833	1	1000	1000		65.803	2.4969	1	915990			12009	1358	8326	8342	13438	13438					0.08254972902852842
ELKKIQGEL	9	Unmodified	_ELKKIQGEL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.3170166015625	2	529.316232	1056.61791	-0.52231	-0.00027647	0.14487	7.6681E-05	-0.37744	-0.00019979	529.316281188261	36.335	0.87106	36.13	35.852	36.723	-0.20518					61	22	5	0	0	0	0.43628	2	2822	2822;2869		63.534	3.4156	1	7387300	+		12010	21295	8327	8343	13439;13440	13439					0.09186585165866745
ELKKKFLV	8	Unmodified	_ELKKKFLV_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7814636230469	2	502.828778	1003.643	-0.34886	-0.00017542	-0.2944	-0.00014803	-0.64326	-0.00032345	502.82828234197945	52.005	0.21484	51.886	51.833	52.048	-0.11875					6	5	2	0	0	0	0.027866	1	5394	5394		19.36	0	1	84941	+		12011	36798;24957	8328	8344	13441	13441					0.1413268475910172
ELKKKTAI	8	Unmodified	_ELKKKTAI_					0	0	0			REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.90081787109375	2	465.80276	929.590967	0.11746	5.4713E-05	-0.055707	-2.5948E-05	0.061753	2.8765E-05	465.80260540613665	20.392	0.44252	20.224	20.002	20.444	-0.16774					18	8	3	0	0	0	0.027866	1	523	523		16.473	4.2663	1	157350	+		12012	22033	8329	8345	13442	13442					0.12335521345323741
ELKKLKMV	8	Oxidation (M)	_ELKKLKM(Oxidation (M))V_		ELKKLKM(1)V		ELKKLKM(46)V	0	0	1			REV__nc|ENSG00000166821|O75192-2|PEX11A	REV__nc|ENSG00000166821|O75192-2|PEX11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.8139343261719	2	502.81227	1003.60999	0.69855	0.00035124	2.14	0.001076	2.8385	0.0014272	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	0.94517	1	11895	11895		45.952	6.9305	1	14776000	+		12013	26060	8330	8346	13443	13443		773			0.10832734644748143
ELKKMLATH	9	Unmodified	_ELKKMLATH_					0	0	0			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.76904296875	2	535.804977	1069.5954	-0.062534	-3.3506E-05	1.8754	0.0010048	1.8128	0.00097132	536.3066555987546	86.628	0.72234	86.628	86.43	87.152	0					23	16	2	0	0	0	0.024374	1	10937	10937		32.812	1.2826	1	65981	+		12014	26765	8331	8347	13444	13444					0.06338662496591496
ELKKPEVK	8	Unmodified	_ELKKPEVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2921142578125	2	485.800217	969.585882	-0.73118	-0.00035521	0.74433	0.0003616	0.013153	6.3897E-06	485.80045124624417	81.555	0.56998	81.424	81.135	81.705	-0.13075					21	13	3	0	0	0	0.027866	1	10168	10168		24.203	1.1603	1	127960	+		12015	25017	8332	8348	13445	13445					0.09987217482716915
ELKKPPCV	8	Unmodified	_ELKKPPCV_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2639465332031	2	457.262413	912.510274	0.3516	0.00016077	3.8598	0.0017649	4.2114	0.0019257	457.2640675136426	78.861	1.8585	78.607	77.998	79.857	-0.25471					112	43	5	0	0	0	1.0516	1	9443	9443		29.15	4.9468	1	1133100	+		12016	28261	8333	8349	13446	13446					0.05051917030777986
ELKKPPCV	8	Unmodified	_ELKKPPCV_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2640380859375	2	457.262413	912.510274	0.383	0.00017513	3.8425	0.001757	4.2255	0.0019322	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	0.94517	8	9866	9723;9735;9866;9879;9890;9920;9944;10060		45.952	8.0096	1	4505400	+		12017	28261	8333	8349	13447;13448;13449;13450;13451;13452;13453;13454	13449					0.05051917030777986
ELKKPPCV	8	Unmodified	_ELKKPPCV_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.26416015625	2	457.262413	912.510274	0.19667	8.9932E-05	4.032	0.0018437	4.2286	0.0019336	457.2641530854736	78.972	2.3995	78.741	77.586	79.985	-0.23141					139	56	5	0	0	0	1.0009	2	9456	9430;9456		37.159	10.466	1	1085400	+		12018	28261	8333	8349	13455;13456	13456					0.05051917030777986
ELKKPPCV	8	Unmodified	_ELKKPPCV_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.263916015625	2	457.262413	912.510274	0.63633	0.00029097	3.7264	0.001704	4.3628	0.0019949	457.26397671314425	84.191	1.7711	84.032	83.671	85.442	-0.15869					90	41	3	0	0	0	0.97794	2	10186	10175;10186		40.778	11.629	1	896490	+		12019	28261	8333	8349	13457;13458	13458					0.05051917030777986
ELKKPPCV	8	Unmodified	_ELKKPPCV_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2626647949219	2	457.262413	912.510274	0.4907	0.00022438	3.7748	0.0017261	4.2655	0.0019504	457.26409040197166	84.209	1.7383	84.071	83.672	85.41	-0.13789					75	40	3	0	0	0	0.87148	2	10149	10149;10172		53.351	16.192	1	685690	+		12020	28261	8333	8349	13459;13460	13459					0.05051917030777986
ELKKRAQEL	9	Unmodified	_ELKKRAQEL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.8324584960938	2	557.83258	1113.65061	0.25918	0.00014458	-0.90887	-0.000507	-0.64969	-0.00036242	557.832152409974	22.403	1.4426	22.214	21.723	23.166	-0.18894					78	30	5	0	0	0	0.041068	3	797	786;797;809		132.76	13.065	1	3386900			12021	4286	8334	8350	13461;13462;13463	13462					0.09832792288693781
ELKKRAQEL	9	Unmodified	_ELKKRAQEL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.8323364257812	2	557.83258	1113.65061	-0.58763	-0.0003278	-0.02238	-1.2484E-05	-0.61001	-0.00034028	557.8325850234412	22.578	1.0569	22.392	22.094	23.151	-0.18539					37	22	2	0	0	0	0.12914	1	814	814		104.06	0	1	3405400			12022	4286	8334	8350	13464	13464					0.09832792288693781
ELKKRAQEL	9	Unmodified	_ELKKRAQEL_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.8321533203125	2	557.83258	1113.65061	0.30703	0.00017127	-1.0903	-0.00060823	-0.78331	-0.00043695	557.8320062463827	22.599	1.348	22.397	21.808	23.156	-0.20198					66	28	4	0	0	0	0.1158	1	795	795		107.01	5.4068	1	3005500			12023	4286	8334	8350	13465	13465					0.09832792288693781
ELKKSKVL	8	Unmodified	_ELKKSKVL_					0	0	0		ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.810791015625	2	472.810585	943.606617	0.58714	0.00027761	-0.48014	-0.00022701	0.10701	5.0594E-05	472.8100291703544	21.598	0.80968	21.421	21.209	22.019	-0.17721					31	16	4	0	0	0	1.0284	1	698	698		32.812	1.2826	1	280860			12024	64	8335	8351	13466	13466					0.13255807862390157
ELKKVAAGK	9	Unmodified	_ELKKVAAGK_					0	0	0		nc|ENSG00000084734|Q14397|GCKR;ENSG00000084734|ENST00000264717|GCKR	nc|ENSG00000084734|Q14397|GCKR	nc|ENSG00000084734|Q14397|GCKR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2792663574219	2	472.300384	942.586216	-0.70345	-0.00033224	0.80059	0.00037812	0.097133	4.5876E-05	472.30066184193583	55.463	0.8484	55.248	54.967	55.815	-0.21551					51	23	3	0	0	0	0.024405	1	5893	5893		27.882	2.4321	1	1536100			12025	1779	8336	8352	13467	13467					0.11262637202571568
ELKKVAAGK	9	Unmodified	_ELKKVAAGK_					0	0	0		nc|ENSG00000084734|Q14397|GCKR;ENSG00000084734|ENST00000264717|GCKR	nc|ENSG00000084734|Q14397|GCKR	nc|ENSG00000084734|Q14397|GCKR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.300384	942.586216	-0.038262	-1.8071E-05	-0.005701	-2.6926E-06	-0.043963	-2.0764E-05	472.3003032166392	55.469	0.72554	55.238	54.997	55.723	-0.23087	0.0018637	-0.00040656	NaN	27.882	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2129800			12026	1779	8336	8352							0.11262637202571568
ELKKVAQEL	9	Unmodified	_ELKKVAQEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.3156127929688	2	529.316232	1056.61791	-0.52231	-0.00027647	0.14487	7.6681E-05	-0.37744	-0.00019979	529.316281188261	36.335	0.87106	36.13	35.852	36.723	-0.20518					61	22	5	0	0	0	0.15366	1	2843	2843		98.629	10.933	1	7387300			12027	2184	8337	8353	13468	13468					0.09186585165844008
ELKKVAQEL	9	Unmodified	_ELKKVAQEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.316162109375	2	529.316232	1056.61791	-0.1548	-8.1939E-05	-0.37833	-0.00020026	-0.53313	-0.00028219	529.3159769167021	36.361	0.84978	36.145	35.879	36.729	-0.21661					63	21	5	0	0	0	0.10464	1	2848	2848		109.48	10.896	1	7885400			12028	2184	8337	8353	13469	13469					0.09186585165844008
ELKKVAQEL	9	Unmodified	_ELKKVAQEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.3162231445312	2	529.316232	1056.61791	1.2844	0.00067988	-1.8688	-0.00098917	-0.58433	-0.00030929	529.3151936383892	36.287	1.5152	36.089	35.809	37.324	-0.19829					79	38	4	0	0	0	0.071379	1	2806	2806		120.87	0	1	6646300			12029	2184	8337	8353	13470	13470					0.09186585165844008
ELKLAIPE	8	Unmodified	_ELKLAIPE_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2899475097656	2	456.773668	911.532783	0.97466	0.0004452	-3.6232	-0.001655	-2.6486	-0.0012098	456.77191356987265	86.315	0.98563	86.315	85.956	86.941	0					38	22	3	0	0	0	0.027866	1	10806	10806		40.778	17.736	1	197790			12030	1774;107	8338	8354	13471	13471					0.07347839700059922
ELKLAIPE	8	Unmodified	_ELKLAIPE_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.773668	911.532783	0.20329	9.2858E-05	-3.074	-0.0014041	-2.8707	-0.0013113	456.7722316460409	86.506	0.98293	86.319	86.079	87.062	-0.18696	-0.026585	0.00014932	NaN	40.778	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309130			12031	1774;107	8338	8354							0.07347839700059922
ELKLAIPE	8	Unmodified	_ELKLAIPE_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.773668	911.532783	0.57705	0.00026358	-3.3214	-0.0015171	-2.7443	-0.0012535	456.7719803694059	86.504	1.0706	86.361	86.059	87.13	-0.14217	0.01551	-7.6679E-05	NaN	40.778	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195070			12032	1774;107	8338	8354							0.07347839700059922
ELKLKKALADI	11	Unmodified	_ELKLKKALADI_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.392822265625	2	621.395013	1240.77547	-1.2361	-0.00076809	-2.0241	-0.0012578	-3.2602	-0.0020259	621.3936308468791	103.45	0.61192	103.32	103.09	103.7	-0.12783					38	14	4	0	0	0	0.97926	1	12878	12878		41.427	7.2541	1	482820	+		12033	22782	8339	8355	13472	13472					0.1647166470522734
ELKLKKALADI	11	Unmodified	_ELKLKKALADI_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	621.395013	1240.77547	-0.62673	-0.00038945	-2.5993	-0.0016152	-3.226	-0.0020046	621.3932608145468	103.28	0.71376	103.28	102.92	103.63	0	-0.033564	0.00053731	NaN	41.427	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556010	+		12034	22782	8339	8355							0.1647166470522734
ELKLKSFAP	9	Unmodified	_ELKLKSFAP_					0	0	0		nc|ENSG00000122432|Q5VX52-2|SPATA1;nc|ENSG00000122432|Q5VX52-4|SPATA1;ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1	nc|ENSG00000122432|Q5VX52-2|SPATA1	nc|ENSG00000122432|Q5VX52-2|SPATA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.830810546875	2	516.808042	1031.60153	-1.0626	-0.00054919	-3.1265	-0.0016158	-4.1891	-0.002165	516.8063691039822	53.684	0.5563	53.548	53.281	53.837	-0.13617					33	16	3	0	0	0	0.024292	1	5645	5645		40.778	0	1	716580			12035	3924	8340	8356	13473	13473					0.08699503999741864
ELKLMTAKL	9	Oxidation (M)	_ELKLM(Oxidation (M))TAKL_		ELKLM(1)TAKL		ELKLM(53)TAKL	0	0	1		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8173217773438	2	531.81501	1061.61547	-0.26415	-0.00014048	3.569	0.0018981	3.3049	0.0017576	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.5973	1	11052	11052		52.937	12.159	1	3741200			12036	9607	8341	8357	13474	13474		396			0.0871241343654674
ELKLMTAKL	9	Oxidation (M)	_ELKLM(Oxidation (M))TAKL_		ELKLM(1)TAKL		ELKLM(55)TAKL	0	0	1		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8168334960938	2	531.81501	1061.61547	0.30294	0.00016111	2.8637	0.001523	3.1666	0.0016841	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.56934	1	10902	10902		54.776	24.459	1	3405600			12037	9607	8341	8357	13475	13475		396			0.0871241343654674
ELKLPDVGEP	10	Unmodified	_ELKLPDVGEP_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.7781372070312	2	548.797872	1095.58119	-1.1278	-0.00061895	-4.2841	-0.0023511	-5.4119	-0.0029701	548.793741605586	64.55	0.1853	64.288	64.155	64.341	-0.2626					7	4	2	0	0	0	0.03519	1	7560	7560		26.693	0	1	78400	+		12038	28289	8342	8358	13476	13476					0.037222885493065405
ELKLQEFV	8	Unmodified	_ELKLQEFV_					0	0	0		nc|ENSG00000198719|O00548-2|DLL1;ENSG00000198719|ENST00000366756|DLL1	nc|ENSG00000198719|O00548-2|DLL1	nc|ENSG00000198719|O00548-2|DLL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.8138732910156	2	503.2844	1004.55425	-0.53866	-0.0002711	0.4292	0.00021601	-0.10946	-5.5089E-05	503.28457632896027	96.028	1.0732	95.872	95.181	96.255	-0.15646					35	24	2	0	0	0	0.027866	1	11860	11860		53.351	9.2347	1	520840			12039	10178	8343	8359	13477	13477					0.05215224728760859
ELKLRLRLVE	10	Unmodified	_ELKLRLRLVE_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	634.3761596679688	2	634.906079	1267.79761	0.31918	0.00020265	2.1943	0.0013932	2.5135	0.0015958	634.9072121423361	111.34	0.13294	111.19	111.11	111.24	-0.1469					8	4	2	0	0	0	0.03519	1	13580	13580		3.1592	0	1	87482			12040	10551	8344	8360	13478	13478					0.1744188917361953
ELKLRVISP	9	Unmodified	_ELKLRVISP_					0	0	0		ENST00000282032.3_1_11:30344651-30352445:+|nuORF	ENST00000282032.3_1_11:30344651-30352445:+|nuORF	ENST00000282032.3_1_11:30344651-30352445:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.7669067382812	2	527.834591	1053.65463	0.36449	0.00019239	-1.0898	-0.00057521	-0.72526	-0.00038282	527.8342409525299	67.764	0.45575	67.783	67.549	68.004	0.018921					19	11	2	0	0	0	0.024319	1	8031	8031		47.657	10.498	1	164180			12041	11724	8345	8361	13479	13479					0.12994881782424272
ELKLSLKSK	9	Unmodified	_ELKLSLKSK_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7717895507812	2	523.334424	1044.6543	0.33539	0.00017552	3.2368	0.001694	3.5722	0.0018695	523.3359344599405	72.651	0.69678	72.66	72.411	73.107	0.0097733					35	16	3	0	0	0	0.024541	1	8746	8746		16.473	6.7675	1	349460			12042	5056	8346	8362	13480	13480					0.13375462062572296
ELKLTDKILPV	11	Unmodified	_ELKLTDKILPV_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.59771728515625	3	423.598989	1267.77514	-0.23744	-0.00010058	-2.791	-0.0011823	-3.0284	-0.0012828	423.59771991939675	104.35	0.86096	104.35	103.98	104.84	0					52	20	4	0	0	0	1.0521	1	13400	13400		21.78	0	1	1020200			12043	8386	8347	8363	13481	13481					0.15196244985372687
ELKLVDQSGP	10	Unmodified	_ELKLVDQSGP_					0	0	0		ADAR|p.F744L|1|0.11|ENSG00000160710|chr1:154596843-154596843|G/C|missense_variant	ADAR|p.F744L|1|0.11|ENSG00000160710|chr1:154596843-154596843|G/C|missense_variant	ADAR|p.F744L|1|0.11|ENSG00000160710|chr1:154596843-154596843|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.796142578125	2	543.295496	1084.57644	0.023945	1.3009E-05	1.5002	0.00081507	1.5242	0.00082808	543.2960187956083	71.872	0.52078	71.61	71.403	71.924	-0.26199					16	12	2	0	0	0	0.03519	1	8437	8437		43.651	16.958	1	468140			12044	29	8348	8364	13482	13482					0.03753404406529626
ELKMKKAL	8	Unmodified	_ELKMKKAL_					0	0	0			REV__ENST00000468316.1_1_7:102045023-102065555:+|nuORF	REV__ENST00000468316.1_1_7:102045023-102065555:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.8009338378906	2	480.799163	959.583773	0.37808	0.00018178	2.6419	0.0012702	3.02	0.001452	480.80031956512425	94.257	2.0083	94.257	93.77	95.778	0					166	47	6	0	0	0	0.94517	1	11967	11967		45.952	5.3793	1	23477000	+		12045	22990	8349	8365	13483	13483					0.10236465473246881
ELKMKKAL	8	Unmodified	_ELKMKKAL_					0	0	0			REV__ENST00000468316.1_1_7:102045023-102065555:+|nuORF	REV__ENST00000468316.1_1_7:102045023-102065555:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.8010559082031	2	480.799163	959.583773	-0.09375	-4.5075E-05	3.1194	0.0014998	3.0257	0.0014547	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	0.94517	1	11916	11916		45.952	12.436	1	24672000	+		12046	22990	8349	8365	13484	13484					0.10236465473246881
ELKNFLKEL	9	Unmodified	_ELKNFLKEL_					0	0	0		PLCD1|p.Q166K|1|0.5|ENSG00000187091|chr3:38011606-38011606|G/T|missense_variant	PLCD1|p.Q166K|1|0.5|ENSG00000187091|chr3:38011606-38011606|G/T|missense_variant	PLCD1|p.Q166K|1|0.5|ENSG00000187091|chr3:38011606-38011606|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3297119140625	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.93097	1	11480	11480		30.318	4.7437	1	14057000			12047	18971	8350	8366	13485	13485					0.0881915819995811
ELKNKMDN	8	Unmodified	_ELKNKMDN_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2760925292969	2	496.247492	990.48043	-0.21053	-0.00010448	-0.49946	-0.00024786	-0.70999	-0.00035233	496.2462488079871	31.81	0.87366	31.573	31.299	32.173	-0.23666					26	20	2	0	0	0	0.027866	1	2162	2162		27.882	0	1	51349	+		12048	21411	8351	8367	13486	13486					-0.015190667052138451
ELKNKQAEV	9	Unmodified	_ELKNKQAEV_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7965087890625	2	529.795663	1057.57677	-0.62997	-0.00033375	0.56142	0.00029744	-0.06855	-3.6318E-05	529.7957685823957	21.877	0.62209	21.686	21.42	22.042	-0.19072					31	12	3	0	0	0	0.67687	1	719	719		47.657	5.2612	1	375680			12049	5051	8352	8368	13487	13487					0.05028824126384279
ELKNKQAEV	9	Unmodified	_ELKNKQAEV_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	529.795663	1057.57677	0.22344	0.00011838	-0.33737	-0.00017874	-0.11392	-6.0357E-05	529.7953684253378	21.74	0.76363	21.563	21.303	22.066	-0.17721	-0.061678	-0.00024437	NaN	47.657	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377340			12050	5051	8352	8368							0.05028824126384279
ELKNPPVLPL	10	Unmodified	_ELKNPPVLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3397827148438	2	560.342249	1118.66995	-0.14841	-8.3159E-05	-3.8046	-0.0021319	-3.9531	-0.0022151	560.339968220762	101.14	1.958	101.14	100.73	102.69	0					150	44	6	0	0	0	0.91678	6	12966	12919;12930;12942;12954;12966;12978		52.937	18.508	1	14784000	+		12051	20191;37668	8353	8369	13488;13489;13490;13491;13492;13493	13492					0.11535748579603933
ELKNPPVLPL	10	Unmodified	_ELKNPPVLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3399658203125	2	560.342249	1118.66995	-0.38796	-0.00021739	-3.4302	-0.0019221	-3.8182	-0.0021395	560.3401809188904	101.1	1.8443	101.11	100.79	102.63	0.0090256					135	42	6	0	0	0	0.91678	4	12884	12884;12894;12906;12918		52.937	22.619	1	14349000	+		12052	20191;37668	8353	8369	13494;13495;13496;13497	13494					0.11535748579603933
ELKNPPVLPL	10	Unmodified	_ELKNPPVLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3399658203125	2	560.342249	1118.66995	0.14489	8.1187E-05	-3.9654	-0.002222	-3.8205	-0.0021408	560.3398724189238	101.17	1.8281	101.17	100.81	102.63	-0.0054474					131	41	5	0	0	0	0.66532	5	12918	12856;12868;12880;12892;12918		69.628	16.276	1	15569000	+		12053	20191;37668	8353	8369	13498;13499;13500;13501;13502	13502					0.11535748579603933
ELKNPPVLPL	10	Unmodified	_ELKNPPVLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3402099609375	2	560.342249	1118.66995	0.39378	0.00022065	-4.1525	-0.0023268	-3.7587	-0.0021062	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	0.91678	4	12544	12544;12556;12567;12579		52.937	13.684	1	14365000	+		12054	20191;37668	8353	8369	13503;13504;13505;13506	13503					0.11535748579603933
ELKNPPVLPL	10	Unmodified	_ELKNPPVLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3397827148438	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	0.77808	4	12563	12552;12563;12575;12586		62.107	12.666	1	13153000	+		12055	20191;37668	8353	8369	13507;13508;13509;13510	13508					0.11535748579603933
ELKNPPVLPL	10	Unmodified	_ELKNPPVLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3400268554688	2	560.342249	1118.66995	-0.071418	-4.0019E-05	-3.7355	-0.0020932	-3.8069	-0.0021332	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	0.77808	4	12550	12550;12562;12574;12586		62.107	12.666	1	13448000	+		12056	20191;37668	8353	8369	13511;13512;13513;13514	13511					0.11535748579603933
ELKPPDIPD	9	Unmodified	_ELKPPDIPD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2686767578125	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	0.5973	1	13680	13680		52.937	5.0211	1	6386000			12057	6479	8354	8370	13515	13515					0.01806330486465413
ELKPQPLICT	10	Unmodified	_ELKPQPLICT_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.3316040039062	2	571.317917	1140.62128	-0.93118	-0.000532	3.4467	0.0019692	2.5155	0.0014372	571.3199287044592	46.818	0.41398	46.869	46.685	47.099	0.051399					21	10	3	0	0	0	0.03519	1	4607	4607		31.634	14.269	1	301530	+		12058	26976	8355	8371	13516	13516					0.05659511948215368
ELKQQLEN	8	Unmodified	_ELKQQLEN_					0	0	0			REV__nc|ENSG00000100592|Q9Y4D1-3|DAAM1	REV__nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.29058837890625	2	501.266739	1000.51892	0.15198	7.6182E-05	-2.3087	-0.0011573	-2.1567	-0.0010811	501.26537040387603	85.283	0.2132	85.145	85.07	85.284	-0.13753					5	4	2	0	0	0	0.027866	1	10338	10338		35.152	2.4015	1	75521	+		12059	21136	8356	8372	13517	13517					0.01868562200957058
ELKQRKYKTRR	11	Unmodified	_ELKQRKYKTRR_					0	0	0			REV__nc|ENSG00000135638|Q04741-2|EMX1	REV__nc|ENSG00000135638|Q04741-2|EMX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2945556640625	3	502.638953	1504.89503	0.43425	0.00021827	2.261	0.0011365	2.6953	0.0013548	502.64003107986997	102.28	0.44931	102.15	101.86	102.31	-0.1293					14	10	2	0	0	0	0.024885	1	12674	12674		4.8861	1.8602	1	62033	+		12060	23566	8357	8373	13518	13518					0.1627767110246623
ELKQRNGAL	9	Unmodified	_ELKQRNGAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7960205078125	2	514.795998	1027.57744	0.080457	4.1419E-05	-1.013	-0.0005215	-0.93256	-0.00048008	514.7954167995593	23.882	0.66668	23.667	23.467	24.134	-0.2151					20	14	2	0	0	0	0.25032	1	991	991		82.305	11.009	1	1269300			12061	1102	8358	8374	13519	13519					0.06475663566084222
ELKQRNGAL	9	Unmodified	_ELKQRNGAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.7962646484375	2	514.795998	1027.57744	1.8664	0.00096084	-2.8567	-0.0014706	-0.9903	-0.0005098	514.7944182667683	23.786	0.52754	23.595	23.4	23.928	-0.19117					17	11	2	0	0	0	0.096521	1	948	948		111.65	17.642	1	1392200			12062	1102	8358	8374	13520	13520					0.06475663566084222
ELKQSRQL	8	Unmodified	_ELKQSRQL_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2907409667969	2	501.290548	1000.56654	-0.24381	-0.00012222	-0.14362	-7.1996E-05	-0.38743	-0.00019422	501.29050447509593	23.961	1.3568	23.781	23.021	24.378	-0.17989					68	31	4	0	0	0	0.56592	1	996	996		79.451	13.022	1	523280			12063	1691	8359	8375	13521	13521					0.06628261191815454
ELKQVPLGW	9	Unmodified	_ELKQVPLGW_					0	0	0			REV__ENSG00000149346|ENST00000334534|SLX4IP	REV__ENSG00000149346|ENST00000334534|SLX4IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.236572265625	2	535.305667	1068.59678	-0.87464	-0.0004682	1.0708	0.00057322	0.19619	0.00010502	535.3063080914184	69.542	0.45625	69.275	69.037	69.493	-0.26725					13	10	2	0	0	0	0.024466	1	8044	8044		25.45	11.313	1	168640	+		12064	24673	8360	8376	13522	13522					0.06522619857014433
ELKRELEQL	9	Unmodified	_ELKRELEQL_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.329833984375	2	579.32987	1156.64519	-0.91025	-0.00052733	0.23457	0.00013589	-0.67567	-0.00039144	579.3299521793355	47.296	0.60843	47.355	47.069	47.677	0.059093					45	17	3	0	0	0	0.056725	1	4673	4673		126.24	10.749	1	4113300	+		12065	26733	8361	8377	13523	13523					0.07313068706230297
ELKREPKFSS	10	Unmodified	_ELKREPKFSS_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.2311706542969	3	407.559305	1219.65609	0.17587	7.1677E-05	-2.4721	-0.0010075	-2.2962	-0.00093585	407.5581917283332	43.583	0.43159	43.583	43.44	43.872	0					17	11	2	0	0	0	0.03519	1	4071	4071		29.551	12.384	1	339880	+		12066	23844	8362	8378	13524	13524					0.05504471080530493
ELKRGQLAS	9	Unmodified	_ELKRGQLAS_					0	0	0			REV__ENST00000472200.1_1_3:136537665-136537851:+|nuORF	REV__ENST00000472200.1_1_3:136537665-136537851:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.29058837890625	2	501.290548	1000.56654	-0.38963	-0.00019532	-0.25636	-0.00012851	-0.64599	-0.00032383	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.91321	1	10798	10798		31.53	0	1	8504000	+		12067	33202	8363	8379	13525	13525					0.06628261191804086
ELKRGQLAS	9	Unmodified	_ELKRGQLAS_					0	0	0			REV__ENST00000472200.1_1_3:136537665-136537851:+|nuORF	REV__ENST00000472200.1_1_3:136537665-136537851:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.29071044921875	2	501.290548	1000.56654	-0.51649	-0.00025891	-0.28986	-0.0001453	-0.80636	-0.00040422	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.91321	1	10762	10762		31.53	2.3803	1	8326900	+		12068	33202	8363	8379	13526	13526					0.06628261191804086
ELKRIMDP	8	Unmodified	_ELKRIMDP_					0	0	0			REV__nc|ENSG00000161298|Q96SR6-3|ZNF382	REV__nc|ENSG00000161298|Q96SR6-3|ZNF382	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.27728271484375	2	501.276052	1000.53755	-1.0104	-0.00050651	3.1881	0.0015981	2.1776	0.0010916	501.77684364217646	64.813	0.48418	64.813	64.499	64.983	0					16	12	2	0	0	0	0.027866	1	7611	7611		69.628	28.849	1	106420	+		12069	25381	8364	8380	13527	13527					0.03730400571168957
ELKRIRSS	8	Unmodified	_ELKRIRSS_					0	0	0			REV__ENSG00000141252|ENST00000437048|VPS53	REV__ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.78033447265625	2	494.79854	987.582528	-0.84635	-0.00041877	0.66055	0.00032684	-0.1858	-9.1931E-05	494.79875902908526	89.065	0.61894	88.9	88.636	89.255	-0.16448					22	14	2	0	0	0	0.027866	1	10907	10907		45.952	0	1	105780	+		12070	24070	8365	8381	13528	13528					0.08823967428725155
ELKRKKAL	8	Unmodified	_ELKRKKAL_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3296203613281	2	493.329476	984.6444	-0.075884	-3.7436E-05	-0.25475	-0.00012568	-0.33064	-0.00016311	493.32930832383397	24.243	0.98577	24.068	23.612	24.598	-0.17484					64	22	5	0	0	0	0.97924	1	1047	1047		40.573	3.4135	1	4472200	+		12071	28131	8366	8382	13529	13529					0.15146318847837392
ELKRLKLKP	9	Unmodified	_ELKRLKLKP_					0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.7755126953125	2	562.879333	1123.74411	-0.6532	-0.00036767	0.58787	0.0003309	-0.065327	-3.6771E-05	562.8795060347952	54.737	0.4863	54.737	54.492	54.979	0					29	13	3	0	0	0	0.024466	1	6017	6017		47.657	30.292	1	438090	+		12072	37166	8367	8383	13530	13530					0.18719136461777452
ELKRQNEL	8	Unmodified	_ELKRQNEL_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2874755859375	2	515.288005	1028.56146	2.061	0.001062	-1.879	-0.00096822	0.18203	9.3796E-05	515.2871704612409	24.664	0.74142	24.483	24.114	24.855	-0.18089					35	16	3	0	0	0	0.56592	1	1079	1079		79.451	8.1553	1	1281000			12073	2250	8368	8384	13531	13531					0.04831957329201941
ELKRRGDK	8	Unmodified	_ELKRRGDK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.29364013671875	2	501.296165	1000.57778	-0.44934	-0.00022525	3.0059	0.0015068	2.5565	0.0012816	501.2977694329709	53.233	0.64419	53.329	53.092	53.736	0.095669					50	17	5	0	0	0	0.027866	1	5731	5731		23.042	0	1	1037900			12074	4485	8369	8385	13532	13532					0.07751083285950244
ELKRRGDK	8	Unmodified	_ELKRRGDK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.296165	1000.57778	-0.029403	-1.474E-05	2.0463	0.0010258	2.0169	0.0010111	501.2974483636153	53.447	0.56664	53.447	53.16	53.726	0	0.063961	-0.00091673	NaN	10.866	41	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1030500			12075	4485	8369	8385							0.07751083285950244
ELKRRGDK	8	Unmodified	_ELKRRGDK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.296165	1000.57778	-0.36075	-0.00018084	3.5946	0.001802	3.2339	0.0016211	501.2976633349767	53.475	0.4962	53.348	53.143	53.639	-0.12705	-0.035146	0.00063562	NaN	10.866	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	930420			12076	4485	8369	8385							0.07751083285950244
ELKRRGDK	8	Unmodified	_ELKRRGDK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.296165	1000.57778	-0.20136	-0.00010094	3.2078	0.001608	3.0064	0.0015071	501.2973452840192	53.667	0.45708	53.422	53.199	53.657	-0.2453	0.038986	0.00024773	NaN	10.866	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	877960			12077	4485	8369	8385							0.07751083285950244
ELKRRGDK	8	Unmodified	_ELKRRGDK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.296165	1000.57778	-0.54387	-0.00027264	3.4625	0.0017357	2.9186	0.0014631	501.2974904629574	53.567	0.45612	53.369	53.163	53.619	-0.19739	-0.013822	0.0005031	NaN	10.866	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	870190			12078	4485	8369	8385							0.07751083285950244
ELKSAIFLSTI	11	Unmodified	_ELKSAIFLSTI_					0	0	0			REV__ENSG00000175305|ENST00000308108|CCNE2	REV__ENSG00000175305|ENST00000308108|CCNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3553466796875	2	611.358096	1220.70164	-1.8282	-0.0011177	-1.5669	-0.00095792	-3.395	-0.0020756	611.3569960574569	91.44	0.76177	91.44	91.011	91.772	0					33	17	2	0	0	0	0.98542	1	11603	11603		40.058	4.9061	1	1547500	+		12079	26938	8370	8386	13533	13533					0.1001169654291516
ELKSAIFLSTI	11	Unmodified	_ELKSAIFLSTI_					0	0	0			REV__ENSG00000175305|ENST00000308108|CCNE2	REV__ENSG00000175305|ENST00000308108|CCNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3541259765625	2	611.358096	1220.70164	-0.19635	-0.00012004	-3.3434	-0.002044	-3.5398	-0.0021641	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.0017	2	11342	11331;11342		36.447	3.6343	1	5237500	+		12080	26938	8370	8386	13534;13535	13535					0.1001169654291516
ELKSEYESD	9	Unmodified	_ELKSEYESD_					0	0	0			REV__ENSG00000139537|ENST00000320516|CCDC65	REV__ENSG00000139537|ENST00000320516|CCDC65	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2974243164062	2	550.243126	1098.4717	-0.89947	-0.00049493	3.9492	0.002173	3.0497	0.0016781	550.2452030557776	62.227	0.42191	62.049	61.843	62.265	-0.17781					17	10	2	0	0	0	0.024495	1	7031	7031		34.173	5.023	1	134000	+		12081	23945	8371	8387	13536	13536					-0.073597618606982
ELKSIVSQV	9	Unmodified	_ELKSIVSQV_					0	0	0			REV__ENST00000577226.5_1_17:27233817-27234084:-|nuORF	REV__ENST00000577226.5_1_17:27233817-27234084:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2772521972656	2	501.795132	1001.57571	-0.26697	-0.00013396	1.9111	0.000959	1.6442	0.00082504	501.79688818147974	96.447	0.5489	96.447	96.155	96.704	0					22	12	2	0	0	0	0.024427	1	12308	12308		26.693	1.1189	1	129290	+		12082	35475	8372	8388	13537	13537					0.07498609757476515
ELKSPWKAPVK	11	Unmodified	_ELKSPWKAPVK_					0	0	0		ENST00000555004.2_3_14:96555950-96556580:+|nuORF	ENST00000555004.2_3_14:96555950-96556580:+|nuORF	ENST00000555004.2_3_14:96555950-96556580:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8824462890625	2	641.87953	1281.74451	0.89146	0.00057221	3.5954	0.0023078	4.4869	0.00288	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.98542	1	12188	12188		40.058	5.8856	1	2810000			12083	16670	8373	8389	13538	13538					0.11490511390979918
ELKSQKVR	8	Unmodified	_ELKSQKVR_					0	0	0		TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.301025390625	2	494.300916	986.587279	0.096981	4.7938E-05	-0.41903	-0.00020712	-0.32204	-0.00015919	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	1.0009	1	11852	11852		37.159	1.5408	1	34796000			12084	38057	8374	8390	13539	13539					0.09344851571484014
ELKSRTKEV	9	Unmodified	_ELKSRTKEV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3167724609375	2	545.316763	1088.61897	-0.46982	-0.0002562	0.22064	0.00012032	-0.24919	-0.00013589	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.74711	1	11279	11279		42.864	11.334	1	12792000			12085	6479;18400	8375	8391	13540	13540					0.07820799534761136
ELKSTLAKR	9	Unmodified	_ELKSTLAKR_					0	0	0			REV__ENSG00000198759|ENST00000361306|EGFL6	REV__ENSG00000198759|ENST00000361306|EGFL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3027954101562	2	523.321848	1044.62914	-0.34137	-0.00017864	-0.20472	-0.00010714	-0.54609	-0.00028578	523.3220521935917	87.395	1.0724	87.216	86.698	87.771	-0.17875					33	25	3	0	0	0	0.023274	1	10567	10567		67.494	0	1	226350	+		12086	28468	8376	8392	13541	13541					0.10861407259994849
ELKSVAGISCV	11	Unmodified	_ELKSVAGISCV_					0	0	0			REV__ENST00000545314.5_1_1:65691869-65691947:+|nuORF	REV__ENST00000545314.5_1_1:65691869-65691947:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.332275390625	2	553.299724	1104.5849	-0.35133	-0.00019439	0.068138	3.7701E-05	-0.28319	-0.00015669	553.299400729594	95.272	0.60604	95.12	94.668	95.274	-0.15186					17	13	2	0	0	0	0.024759	1	11761	11761		40.058	22.693	1	48976	+		12087	34822	8377	8393	13542	13542					0.036786350515058075
ELKTEVEQLK	10	Unmodified	_ELKTEVEQLK_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000551367.5_1_21:37741970-37758388:+|nuORF;ENST00000547657.1_1_21:37741970-37758388:+|nuORF	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.58746337890625	3	406.230966	1215.67107	-0.13336	-5.4175E-05	-2.1406	-0.00086958	-2.274	-0.00092376	406.22960300974756	25.308	1.1	25.081	24.752	25.852	-0.22683					58	25	4	0	0	0	0.03519	1	1234	1234		46.457	0	1	1247200			12088	6732	8378	8394	13543	13543					0.07185918157847482
ELKTGLLTK	9	Unmodified	_ELKTGLLTK_					0	0	0			REV__nc|ENSG00000127191|Q12933-4|TRAF2	REV__nc|ENSG00000127191|Q12933-4|TRAF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2311096191406	2	501.813325	1001.6121	-1.4232	-0.00071419	2.7267	0.0013683	1.3034	0.00065409	501.8145918697295	38.321	1.1734	38.348	37.558	38.731	0.027275					47	32	2	0	0	0	0.024418	1	3185	3185		37.812	1.3648	1	426740	+		12089	22921	8379	8395	13544	13544					0.11135486654188753
ELKTKAREL	9	Unmodified	_ELKTKAREL_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|115|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|13|1|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.32666015625	2	544.327131	1086.63971	-0.064083	-3.4882E-05	-0.33039	-0.00017984	-0.39447	-0.00021472	544.326839161328	23.63	1.0471	23.428	22.92	23.967	-0.20193					70	23	5	0	0	0	0.062622	2	961	961;974		124.08	30.885	1	1389700			12090	17847	8380	8396	13545;13546	13545					0.09985389914413645
ELKTKAREL	9	Unmodified	_ELKTKAREL_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|115|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|13|1|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3271484375	2	544.327131	1086.63971	-0.48557	-0.00026431	0.21415	0.00011657	-0.27142	-0.00014774	544.3271218810818	23.545	0.89315	23.365	22.975	23.868	-0.17989					63	20	4	0	0	0	0.16638	2	937	937;949		95.815	20.772	1	1804700			12091	17847	8380	8396	13547;13548	13547					0.09985389914413645
ELKTKAREL	9	Unmodified	_ELKTKAREL_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|115|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|13|1|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3270263671875	2	544.327131	1086.63971	1.2052	0.00065602	-1.6414	-0.00089348	-0.43623	-0.00023745	544.3261298727285	23.554	1.2625	23.363	22.711	23.973	-0.19117					80	28	5	0	0	0	0.094442	2	931	919;931		112.41	32.698	1	1622000			12092	17847	8380	8396	13549;13550	13550					0.09985389914413645
ELKTKNMDD	9	Unmodified	_ELKTKNMDD_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.3268432617188	2	547.263339	1092.51212	0.11784	6.4488E-05	2.7603	0.0015106	2.8782	0.0015751	547.2660322765252	79.875	0.37999	79.656	79.535	79.915	-0.21923					13	8	2	0	0	0	0.024374	1	9574	9574		49.442	12.282	1	49368			12093	1134	8381	8397	13551	13551					-0.030431187419253547
ELKTKNMDD	9	Unmodified	_ELKTKNMDD_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.263339	1092.51212	-0.81515	-0.0004461	8.8053	0.0048188	7.9902	0.0043727	547.771936944192	79.793	0.21112	79.793	79.658	79.87	0	0.083336	0.00060919	NaN	49.442	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32688			12094	1134	8381	8397							-0.030431187419253547
ELKTLALTE	9	Unmodified	_ELKTLALTE_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2984313964844	2	509.294965	1016.57538	-0.46942	-0.00023908	1.2163	0.00061947	0.74691	0.0003804	509.2954594047057	26.844	0.55171	26.676	26.42	26.971	-0.16816					31	12	3	0	0	0	0.024367	1	1423	1423		44.377	10.205	1	389960	+		12095	20653	8382	8398	13552	13552					0.06775190037615175
ELKTRKSLI	9	Unmodified	_ELKTRKSLI_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|165|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|165|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.788818359375	2	544.345323	1086.67609	-1.1666	-0.00063504	-3.5352	-0.0019244	-4.7018	-0.0025594	544.3426888376202	84.879	0.37331	84.806	84.674	85.047	-0.072777					10	8	2	0	0	0	0.024405	1	10633	10633		27.882	4.8398	1	44025	+		12096	36266	8383	8399	13553	13553					0.13622266811125883
ELKTRKSLI	9	Unmodified	_ELKTRKSLI_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|165|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|165|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	544.345323	1086.67609	0.087311	4.7527E-05	-4.3342	-0.0023593	-4.2469	-0.0023118	544.3425525236978	84.851	0.37213	84.851	84.709	85.082	0	0.022585	-0.00026966	NaN	27.882	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42848	+		12097	36266	8383	8399							0.13622266811125883
ELKTSDHKP	9	Unmodified	_ELKTSDHKP_					0	0	0		nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7484130859375	2	527.780013	1053.54547	0.304	0.00016045	3.8508	0.0020324	4.1548	0.0021928	527.7818961660809	84.648	0.87756	84.445	84.081	84.958	-0.20329					38	15	3	0	0	0	0.024409	1	10274	10274		27.047	0	1	666270			12098	3915	8384	8400	13554	13554					0.02084251092287559
ELKTYHEVV	9	Unmodified	_ELKTYHEVV_					0	0	0		PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B;PRPF38B|p.G324Qfs*6|1|0.35|ENSG00000134186|chr1:108699348-108699358|GGGGTTAGAAC/-|frameshift_variant;ENST00000467302.5_1_1:109235213-109236214:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.27197265625	2	559.298039	1116.58152	-0.18301	-0.00010236	-0.28996	-0.00016217	-0.47297	-0.00026453	559.2974167434278	93.186	0.34911	93.042	92.871	93.22	-0.14411					12	7	2	0	0	0	0.023417	1	11451	11451		79.451	26.1	1	77801			12099	4762	8385	8401	13555	13555					0.027897082691424657
ELKVGFNPSP	10	Unmodified	_ELKVGFNPSP_					0	0	0			REV__nc|ENSG00000275410|P35680-4|HNF1B	REV__nc|ENSG00000275410|P35680-4|HNF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2477416992188	2	544.292756	1086.57096	-0.2231	-0.00012143	1.8491	0.0010065	1.626	0.00088504	544.2937213968703	52.72	0.54996	52.462	52.173	52.723	-0.25838					14	13	2	0	0	0	0.03519	1	5483	5483		24.519	0	1	85854	+		12100	37203	8386	8402	13556	13556					0.031137256147076187
ELKVGFNPSP	10	Unmodified	_ELKVGFNPSP_					0	0	0			REV__nc|ENSG00000275410|P35680-4|HNF1B	REV__nc|ENSG00000275410|P35680-4|HNF1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.292756	1086.57096	-1.0252	-0.000558	-0.82815	-0.00045075	-1.8533	-0.0010088	544.2925795555408	52.285	0.20529	52.377	52.24	52.445	0.091938	-0.04236	-0.0019452	NaN	31.53	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73605	+		12101	37203	8386	8402							0.031137256147076187
ELKVKLEL	8	Unmodified	_ELKVKLEL_					0	0	0			REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.30950927734375	2	486.310418	970.606283	-0.68801	-0.00033459	-0.046094	-2.2416E-05	-0.73411	-0.000357	486.31026573006284	44.778	0.80746	44.526	44.248	45.055	-0.25252					41	20	3	0	0	0	0.87148	1	4188	4188		53.351	0	1	1203700	+		12102	34293	8387	8403	13557	13557					0.11980388142512766
ELKVRLEKKLR	11	Unmodified	_ELKVRLEKKLR_					0	0	0			REV__ENSG00000168924|ENST00000302787|LETM1	REV__ENSG00000168924|ENST00000302787|LETM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3289489746094	3	471.308432	1410.90347	-0.3856	-0.00018174	-2.089	-0.00098456	-2.4746	-0.0011663	471.3060109947449	22.688	0.23105	22.502	22.415	22.646	-0.18539					6	4	2	0	0	0	0.024789	1	826	826		21.032	6.3386	1	8746.7	+		12103	26303	8388	8404	13558	13558					0.214452250191016
ELKVSGVLPR	10	Unmodified	_ELKVSGVLPR_					0	0	0		ENST00000395474.7_2_3:49052727-49052976:+|nuORF	ENST00000395474.7_2_3:49052727-49052976:+|nuORF	ENST00000395474.7_2_3:49052727-49052976:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.7584228515625	2	549.337498	1096.66044	-0.69963	-0.00038433	1.6823	0.00092412	0.98262	0.00053979	549.3375306276868	68.649	0.48453	68.388	68.063	68.547	-0.26166					23	11	3	0	0	0	0.03519	1	7932	7932		28.081	3.5623	1	152500			12104	13520	8389	8405	13559	13559					0.11597980294095578
ELLAALLKV	9	Unmodified	_ELLAALLKV_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.30657958984375	2	485.320786	968.627018	-0.060628	-2.9424E-05	0.36776	0.00017848	0.30713	0.00014906	485.32074524294603	72.787	0.61807	72.797	72.489	73.107	0.0096512					24	14	2	0	0	0	0.02435	1	8789	8789		26.693	0	1	152100	+		12105	23724	8390	8406	13560	13560					0.1414497852219938
ELLAARKMAM	10	Unmodified	_ELLAARKMAM_					0	0	0			REV__CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant	REV__CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3296508789062	2	567.312112	1132.60967	0.27246	0.00015457	-4.4706	-0.0025362	-4.1982	-0.0023817	567.3103644494395	90.823	0.2543	90.683	90.449	90.703	-0.13942					7	5	2	0	0	0	0.03519	1	11088	11088		19.104	0	1	96527	+		12106	19242	8391	8407	13561	13561					0.04866991653216246
ELLAEVQGL	9	Unmodified	_ELLAEVQGL_					0	0	0		nc|ENSG00000023902|Q53GL0-2|PLEKHO1;ENSG00000023902|ENST00000369124|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.27410888671875	2	486.274032	970.533512	0.10872	5.2869E-05	0.027552	1.3398E-05	0.13627	6.6267E-05	486.27428202429667	71.258	0.76812	70.986	70.746	71.515	-0.27185					32	17	3	0	0	0	0.024523	1	8363	8363		21.96	0	1	468860			12107	979	8392	8408	13562	13562					0.047066343491110274
ELLAEVQGL	9	Unmodified	_ELLAEVQGL_					0	0	0		nc|ENSG00000023902|Q53GL0-2|PLEKHO1;ENSG00000023902|ENST00000369124|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.274032	970.533512	0.011177	5.4352E-06	1.2314	0.00059881	1.2426	0.00060425	486.27444947519376	71.191	0.71647	70.934	70.651	71.368	-0.25713	0.028992	0.0012613	NaN	15.642	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515450			12108	979	8392	8408							0.047066343491110274
ELLAEVQGL	9	Unmodified	_ELLAEVQGL_					0	0	0		nc|ENSG00000023902|Q53GL0-2|PLEKHO1;ENSG00000023902|ENST00000369124|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.274032	970.533512	0.89542	0.00043542	-0.58451	-0.00028423	0.3109	0.00015118	486.27382350085884	71.166	0.76743	70.96	70.615	71.382	-0.20613	0.055257	-0.00050478	NaN	15.642	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232650			12109	979	8392	8408							0.047066343491110274
ELLAFKVHP	9	Unmodified	_ELLAFKVHP_					0	0	0		ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7996215820312	2	527.30821	1052.60187	0.4046	0.00021335	-0.65985	-0.00034795	-0.25525	-0.0001346	527.3075137056603	83.893	0.46884	83.681	83.517	83.986	-0.21159					15	10	2	0	0	0	0.024427	1	10101	10101		51.335	7.2187	1	68049			12110	15483	8393	8409	13563	13563					0.07766923719623264
ELLAGRIFN	9	Unmodified	_ELLAGRIFN_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2696533203125	2	516.795466	1031.57638	-1.4871	-0.0007685	2.2652	0.0011706	0.7781	0.00040212	516.7964887184229	51.372	1.1838	51.459	50.891	52.074	0.087006					53	32	2	0	0	0	0.024319	1	5291	5291		31.53	2.3803	1	695910	+		12111	27875	8394	8410	13564	13564					0.06185449197187154
ELLALERCIE	10	Unmodified	_ELLALERCIE_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.8175659179688	2	594.818281	1187.62201	-0.39601	-0.00023555	0.83043	0.00049395	0.43442	0.0002584	594.8187815710276	99.688	0.67593	99.517	99.115	99.791	-0.17085					51	17	4	0	0	0	1.0122	1	12367	12367		44.377	10.205	1	474210	+		12112	23052	8395	8411	13565	13565					0.03570306597248418
ELLALHVK	8	Unmodified	_ELLALHVK_					0	0	0			REV__ENST00000332408.8_1_15:49127111-49135710:-|nuORF	REV__ENST00000332408.8_1_15:49127111-49135710:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7612609863281	2	461.789653	921.564752	-0.088162	-4.0712E-05	-0.14146	-6.5323E-05	-0.22962	-0.00010604	461.7894853341509	48.529	0.94002	48.347	48.02	48.96	-0.18206					60	25	3	0	0	0	0.027866	1	4893	4893		17.365	0	1	4425700	+		12113	30490	8396	8412	13566	13566					0.10083252173853907
ELLALVVDL	9	Unmodified	_ELLALVVDL_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.78521728515625	2	492.802426	983.590298	0.84778	0.00041779	4.2442	0.0020915	5.092	0.0025093	492.80464262227355	78.268	0.57417	78.076	77.683	78.257	-0.1921					20	13	2	0	0	0	0.024263	1	9675	9675		51.335	12.529	1	107170	+		12114	24776	8397	8413	13567	13567					0.09784681905625803
ELLAPIILAL	10	Unmodified	_ELLAPIILAL_					0	0	0			REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2410278320312	2	533.349543	1064.68453	-1.0673	-0.00056924	-2.4126	-0.0012868	-3.4799	-0.001856	533.348251802579	34.364	0.40199	34.189	34.011	34.413	-0.17557					19	9	3	0	0	0	0.03519	1	2489	2489		16.473	0	1	152340	+		12115	27847	8398	8414	13568	13568					0.15477820727755898
ELLAQANKL	9	Unmodified	_ELLAQANKL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;DNAH2|p.R2997W|1|0.31|ENSG00000183914|chr17:7804272-7804272|C/T|missense_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7638244628906	2	500.295299	998.576045	0.46841	0.00023434	4.1513	0.0020769	4.6197	0.0023112	500.2975349947829	99.477	0.61106	99.477	99.135	99.746	0					20	13	2	0	0	0	0.024466	1	12725	12725		39.253	11.371	1	41143			12116	9292	8399	8415	13569	13569					0.07670029477333173
ELLAQTSEFTQ	11	Unmodified	_ELLAQTSEFTQ_					0	0	0			REV__ENSG00000126003|ENST00000246229|PLAGL2	REV__ENSG00000126003|ENST00000246229|PLAGL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.85931396484375	3	422.878592	1265.61395	-0.48994	-0.00020718	0.94163	0.0003982	0.4517	0.00019101	422.87957121734536	43.395	0.51683	43.169	42.793	43.31	-0.22597					17	13	2	0	0	0	0.024743	1	3901	3901		12.308	9.9189	1	96184	+		12117	22874	8400	8416	13570	13570					-0.00823549118513256
ELLAQTSEFTQ	11	Unmodified	_ELLAQTSEFTQ_					0	0	0			REV__ENSG00000126003|ENST00000246229|PLAGL2	REV__ENSG00000126003|ENST00000246229|PLAGL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	422.878592	1265.61395	0.012528	5.2977E-06	1.091	0.00046135	1.1035	0.00046665	422.8790432614271	43.271	0.64749	43.159	42.815	43.463	-0.11253	0.022182	3.1058E-05	NaN	12.308	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143120	+		12118	22874	8400	8416							-0.00823549118513256
ELLARKISL	9	Unmodified	_ELLARKISL_					0	0	0		ENST00000498600.2_1_1:170508481-170511691:+|nuORF	ENST00000498600.2_1_1:170508481-170511691:+|nuORF	ENST00000498600.2_1_1:170508481-170511691:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7950439453125	2	521.834591	1041.65463	-0.64258	-0.00033532	0.7855	0.0004099	0.14292	7.4579E-05	521.8348080300842	68.35	0.87389	68.35	68.064	68.938	0					38	22	2	0	0	0	0.024374	1	8161	8161		49.442	13.823	1	476320			12119	15626	8401	8417	13571	13571					0.13546881782417586
ELLARKISL	9	Unmodified	_ELLARKISL_					0	0	0		ENST00000498600.2_1_1:170508481-170511691:+|nuORF	ENST00000498600.2_1_1:170508481-170511691:+|nuORF	ENST00000498600.2_1_1:170508481-170511691:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	521.834591	1041.65463	0.12646	6.5991E-05	-0.020333	-1.061E-05	0.10613	5.538E-05	521.8345754594204	68.484	0.78611	68.503	68.118	68.904	0.018913					31	20	2	0	0	0	0.024405	1	8115	8115		35.618	0	1	297950			12120	15626	8401	8417	13572	13572					0.13546881782417586
ELLASNQKL	9	Unmodified	_ELLASNQKL_					0	0	0			REV__ENSG00000126467|ENST00000246801|TSKS	REV__ENSG00000126467|ENST00000246801|TSKS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.29248046875	2	508.292756	1014.57096	-0.31201	-0.00015859	0.19092	9.7041E-05	-0.12109	-6.155E-05	508.2927805593806	52.066	0.75118	52.066	51.803	52.554	0					55	19	4	0	0	0	0.12602	1	5569	5569		104.75	3.4939	1	7041800	+		12121	22898	8402	8418	13573	13573					0.06425725614712974
ELLAVPFVL	9	Unmodified	_ELLAVPFVL_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7945861816406	2	500.807511	999.600469	-0.033384	-1.6719E-05	-4.2814	-0.0021442	-4.3148	-0.0021609	500.805159885454	50.023	0.42711	49.872	49.671	50.098	-0.1512					15	11	2	0	0	0	0.024325	1	5205	5205		50.025	18.07	1	268220			12122	4869	8403	8419	13574	13574					0.10065289630870211
ELLAVPFVL	9	Unmodified	_ELLAVPFVL_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	500.807511	999.600469	-0.48524	-0.00024301	-3.0795	-0.0015422	-3.5647	-0.0017852	500.8057815176591	49.766	0.36162	49.84	49.654	50.016	0.074196	-0.005099	0.00057777	NaN	50.025	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186670			12123	4869	8403	8419							0.10065289630870211
ELLAVPFVLT	10	Unmodified	_ELLAVPFVLT_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.8174438476562	2	551.33135	1100.64815	-0.18182	-0.00010024	-2.0655	-0.0011388	-2.2473	-0.001239	551.3300926314348	52.649	0.52646	52.459	52.227	52.754	-0.18981					28	12	3	0	0	0	0.03519	1	5442	5442		25.574	0	1	495310			12124	4869	8404	8420	13575	13575					0.10184943831040982
ELLAWLTH	8	Unmodified	_ELLAWLTH_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2644348144531	2	491.77146	981.528367	-0.7241	-0.00035609	2.8258	0.0013897	2.1017	0.0010336	491.77345802683476	37.664	0.93764	37.697	37.264	38.202	0.032269					49	25	3	0	0	0	0.027866	1	2971	2971		57.811	17.239	1	543650			12125	6240	8405	8421	13576	13576					0.036863752771296276
ELLCHITA	8	Unmodified	_ELLCHITA_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-5|DGKH	REV__nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2687072753906	2	450.236396	898.458238	-0.9661	-0.00043497	1.8613	0.00083802	0.89519	0.00040305	450.2368125515073	38.086	0.35759	38.086	38.037	38.395	0					15	10	2	0	0	0	0.027866	1	3185	3185		71.378	5.4805	1	314960	+		12126	21325	8406	8422	13577	13577					0.004947536170107014
ELLDKEAR	8	Unmodified	_ELLDKEAR_					0	0	0			REV__nc|ENSG00000128487|Q5M775-4|SPECC1	REV__nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2544860839844	2	487.269281	972.52401	-0.342	-0.00016665	-0.58311	-0.00028413	-0.92511	-0.00045078	487.26887165674134	64.511	0.63527	64.557	64.153	64.788	0.045502					30	16	2	0	0	0	0.027866	1	7532	7532		31.955	1.4512	1	246960	+		12127	22984	8407	8423	13578	13578					0.03664866063570571
ELLDPLGQP	9	Unmodified	_ELLDPLGQP_					0	0	0			REV__ENST00000597853.5_1_19:49559435-49560608:-|nuORF	REV__ENST00000597853.5_1_19:49559435-49560608:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.82354736328125	2	491.266207	980.517862	0.16442	8.0774E-05	-1.0631	-0.00052229	-0.89873	-0.00044151	491.2655400639938	69.833	0.45746	69.61	69.307	69.764	-0.22245					24	10	3	0	0	0	0.0242	1	8118	8118		60.118	2.307	1	301820	+		12128	35812	8408	8424	13579	13579					0.026823478320579852
ELLDRALEV	9	Unmodified	_ELLDRALEV_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF;REV__ENSG00000242802|ENST00000649063|AP5Z1	REV__ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2975463867188	2	529.298039	1056.58152	-0.37305	-0.00019746	-0.63765	-0.00033751	-1.0107	-0.00053496	529.2974143487326	52.191	1.264	52.043	51.609	52.873	-0.14735					103	32	7	0	0	0	0.15029	1	5551	5551		99.375	3.1845	1	10431000	+		12129	28982;33342	8409	8425	13580	13580					0.055497082691545074
ELLEARRR	8	Unmodified	_ELLEARRR_					0	0	0			REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2825927734375	2	521.809439	1041.60433	-0.3345	-0.00017454	-0.72772	-0.00037973	-1.0622	-0.00055427	521.8087655972755	22.008	0.43358	21.806	21.614	22.048	-0.20199					20	8	3	0	0	0	0.027866	1	730	730		29.15	4.9468	1	35950	+		12130	22100	8410	8426	13581	13581					0.0851877217726269
ELLEARRR	8	Unmodified	_ELLEARRR_					0	0	0			REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.809439	1041.60433	-0.12754	-6.6551E-05	-1.4829	-0.00077379	-1.6104	-0.00084034	521.808686574452	22.068	0.28528	21.877	21.662	21.947	-0.19072	0.078722	-0.00011397	NaN	15.642	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51029	+		12131	22100	8410	8426							0.0851877217726269
ELLEEFVF	8	Unmodified	_ELLEEFVF_					0	0	0		nc|ENSG00000146576|Q96N11-2|INTS15;ENSG00000146576|ENST00000344417|INTS15	nc|ENSG00000146576|Q96N11-2|INTS15	nc|ENSG00000146576|Q96N11-2|INTS15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.3135986328125	2	513.263133	1024.51171	-0.34864	-0.00017895	-3.6318	-0.0018641	-3.9804	-0.002043	513.2616428904562	50.049	0.49337	50.129	49.884	50.377	0.080994					26	14	3	0	0	0	0.027866	1	5180	5180		42.474	8.3019	1	395330			12132	5894	8411	8427	13582	13582					0.0004382960053135321
ELLEKHGL	8	Unmodified	_ELLEKHGL_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	469.7688903808594	2	469.768917	937.523281	-0.30423	-0.00014292	0.054218	2.547E-05	-0.25001	-0.00011745	469.7688678885065	35.585	0.53664	35.369	35.137	35.674	-0.21555					27	13	3	0	0	0	0.56067	1	2726	2726		79.939	0	1	1150000			12133	6229	8412	8428	13583	13583					0.052020714145328384
ELLENKIQA	9	Unmodified	_ELLENKIQA_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.296875	2	529.298039	1056.58152	-0.86191	-0.00045621	0.393	0.00020802	-0.46891	-0.00024819	529.2981090557425	56.157	1.1454	56.157	55.892	57.038	0					63	32	4	0	0	0	0.26966	1	6233	6233		79.713	2.9384	1	5070600	+		12134	26756	8413	8429	13584	13584					0.055497082691545074
ELLENPVQP	9	Unmodified	_ELLENPVQP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8250732421875	2	519.776939	1037.53933	-0.87739	-0.00045605	2.3815	0.0012379	1.5041	0.00078182	519.7786747238532	81.314	0.52373	81.314	80.899	81.423	0					17	12	2	0	0	0	0.024405	1	10124	10124		35.618	3.6634	1	135970			12135	5087	8414	8430	13585	13585					0.022057328607616
ELLERVKP	8	Unmodified	_ELLERVKP_					0	0	0			REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7249755859375	2	492.297842	982.581131	0.62595	0.00030815	0.10175	5.0093E-05	0.72771	0.00035825	492.29764192560367	72.324	0.69377	72.043	71.731	72.425	-0.28124					26	17	2	0	0	0	0.027866	1	8741	8741		32.812	0	1	131580	+		12136	24389	8415	8431	13586	13586					0.08914333339942004
ELLESNFTL	9	Unmodified	_ELLESNFTL_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2764892578125	2	533.276772	1064.53899	-0.13877	-7.4001E-05	0.66449	0.00035436	0.52573	0.00028036	533.2773945124759	82.916	0.60377	82.736	82.418	83.022	-0.18079					27	13	3	0	0	0	0.51687	1	10003	10003		58.23	3.4536	1	162600			12137	2914	8416	8432	13587	13587					0.009303131409069465
ELLESNFTL	9	Unmodified	_ELLESNFTL_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.276772	1064.53899	0.37918	0.00020221	-0.076032	-4.0546E-05	0.30314	0.00016166	533.2766954117475	82.91	0.69171	82.69	82.434	83.126	-0.22016	-0.037023	-0.00028598	NaN	58.23	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153270			12138	2914	8416	8432							0.009303131409069465
ELLESNFTL	9	Unmodified	_ELLESNFTL_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.276772	1064.53899	-0.66665	-0.00035551	0.35472	0.00018916	-0.31194	-0.00016635	533.2775791718718	82.895	0.60184	82.755	82.434	83.036	-0.14014	0.028038	0.00017344	NaN	58.23	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171160			12139	2914	8416	8432							0.009303131409069465
ELLESVIP	8	Unmodified	_ELLESVIP_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2615966796875	2	450.257851	898.501149	-0.15303	-6.8901E-05	-3.568	-0.0016065	-3.721	-0.0016754	450.25627208811943	31.582	0.4689	31.397	31.136	31.604	-0.18503					18	11	2	0	0	0	0.027866	1	2077	2077		18.324	0	1	196670	+		12140	20350	8417	8433	13588	13588					0.04783846946088488
ELLESVIP	8	Unmodified	_ELLESVIP_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.257851	898.501149	0.15302	6.8899E-05	-4.0785	-0.0018364	-3.9255	-0.0017675	450.2559766225213	31.658	0.38605	31.417	31.221	31.607	-0.24109	-0.023541	-0.00021881	NaN	18.324	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184180	+		12141	20350	8417	8433							0.04783846946088488
ELLFFLII	8	Unmodified	_ELLFFLII_					0	0	0		ENST00000358290.8_1_4:88258257-88258386:-|nuORF	ENST00000358290.8_1_4:88258257-88258386:-|nuORF	ENST00000358290.8_1_4:88258257-88258386:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.75823974609375	2	504.312429	1006.61031	-0.3933	-0.00019835	-3.6001	-0.0018156	-3.9934	-0.0020139	504.3101098627351	60.058	0.17653	59.857	59.761	59.938	-0.20016					7	4	2	0	0	0	0.027866	1	6842	6842		14.664	0	1	92504			12142	12712	8418	8434	13589	13589					0.10726477636239906
ELLFKRDYII	10	Unmodified	_ELLFKRDYII_					0	0	0			REV__ENST00000532219.5_3_5:139921832-139928844:+|nuORF	REV__ENST00000532219.5_3_5:139921832-139928844:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.8814392089844	3	437.255334	1308.74417	-0.38803	-0.00016967	-0.33876	-0.00014812	-0.72679	-0.00031779	437.25554550109655	39.586	0.64821	39.422	39.044	39.692	-0.16458					21	16	2	0	0	0	0.03519	1	3335	3335		51.528	0	1	185300	+		12143	28985	8419	8435	13590	13590					0.10215091671148002
ELLFLKSTF	9	Unmodified	_ELLFLKSTF_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.7863159179688	2	549.3157	1096.61685	-0.69019	-0.00037913	-0.54676	-0.00030035	-1.237	-0.00067948	549.315466125659	66.22	0.21349	66.25	66.082	66.296	0.030106					10	5	3	0	0	0	0.024523	1	7789	7789		21.96	6.3181	1	490140	+		12144	23017	8420	8436	13591	13591					0.07240370796944262
ELLFRLLRVEL	11	Unmodified	_ELLFRLLRVEL_					0	0	0			REV__ENST00000379958.2_1_7:92735396-92747190:-|nuORF	REV__ENST00000379958.2_1_7:92735396-92747190:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.6239929199219	3	467.62565	1399.85512	0.37525	0.00017548	-4.4396	-0.0020761	-4.0644	-0.0019006	467.6235097930596	107.2	0.48961	107.05	106.83	107.32	-0.15771					55	18	4	0	0	0	1.0712	1	13327	13327		19.263	1.7947	1	578270	+		12145	31456	8421	8437	13592	13592					0.17118731379218843
ELLGAKRLVT	10	Unmodified	_ELLGAKRLVT_					0	0	0			REV__nc|ENSG00000118520|P05089-3|ARG1	REV__nc|ENSG00000118520|P05089-3|ARG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.3453369140625	2	550.345323	1098.67609	-0.8498	-0.00046768	0.17832	9.8136E-05	-0.67148	-0.00036955	550.3452524453255	29.943	0.92599	29.77	29.532	30.458	-0.17309					52	21	3	0	0	0	0.96822	1	1879	1879		49.536	1.8787	1	523720	+		12146	22414	8422	8438	13593	13593					0.1307026681113257
ELLGAKRLVT	10	Unmodified	_ELLGAKRLVT_					0	0	0			REV__nc|ENSG00000118520|P05089-3|ARG1	REV__nc|ENSG00000118520|P05089-3|ARG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.345323	1098.67609	-0.54371	-0.00029923	0.15734	8.659E-05	-0.38638	-0.00021264	550.345223626822	30.006	0.46619	29.762	29.525	29.991	-0.24415	-0.019968	0.00014449	NaN	49.536	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	574500	+		12147	22414	8422	8438							0.1307026681113257
ELLGAKRLVT	10	Unmodified	_ELLGAKRLVT_					0	0	0			REV__nc|ENSG00000118520|P05089-3|ARG1	REV__nc|ENSG00000118520|P05089-3|ARG1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	550.345323	1098.67609	-0.8498	-0.00046768	0.17832	9.8136E-05	-0.67148	-0.00036955	550.3452524453255	29.943	0.92599	29.77	29.532	30.458	-0.17309	-0.011765	0.00016758	NaN	49.536	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523720	+		12148	22414	8422	8438							0.1307026681113257
ELLGAKRLVT	10	Unmodified	_ELLGAKRLVT_					0	0	0			REV__nc|ENSG00000118520|P05089-3|ARG1	REV__nc|ENSG00000118520|P05089-3|ARG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.345323	1098.67609	-0.22103	-0.00012164	-0.42838	-0.00023576	-0.64941	-0.0003574	550.3448932855573	29.963	0.92852	29.813	29.542	30.471	-0.14952	0.031733	-0.0005002	NaN	49.536	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575900	+		12149	22414	8422	8438							0.1307026681113257
ELLGGAWAR	9	Unmodified	_ELLGGAWAR_					0	0	0			REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2820129394531	2	486.766709	971.518865	-1.2873	-0.00062661	-1.5021	-0.00073118	-2.7894	-0.0013578	486.7663467586047	85.784	0.66413	85.807	85.408	86.072	0.023666					23	15	2	0	0	0	0.02435	1	10709	10709		51.335	3.4199	1	45216	+		12150	33339	8423	8439	13594	13594					0.03196606991616591
ELLGHPFLKL	10	Unmodified	_ELLGHPFLKL_					0	0	0		ENSG00000101349|ENST00000353224|PAK5	ENSG00000101349|ENST00000353224|PAK5	ENSG00000101349|ENST00000353224|PAK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.28564453125	2	583.850242	1165.68593	-1.0174	-0.00059398	-2.6561	-0.0015508	-3.6734	-0.0021447	583.8484351370819	55.433	1.5783	55.287	54.608	56.186	-0.14609					90	42	3	0	0	0	0.03519	1	5933	5933		21.96	15.647	1	445080			12151	2314	8424	8440	13595	13595					0.1097145481651296
ELLGQVTE	8	Unmodified	_ELLGQVTE_					0	0	0			REV__ENSG00000187097|ENST00000334696|ENTPD5	REV__ENSG00000187097|ENST00000334696|ENTPD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.76116943359375	2	444.737283	887.460012	0.010423	4.6355E-06	1.0919	0.0004856	1.1023	0.00049023	444.7384042873509	24.103	0.26569	23.887	23.778	24.044	-0.2151					7	5	2	0	0	0	0.027866	1	1030	1030		16.473	10.16	1	25686	+		12152	27912	8425	8441	13596	13596					0.011780859066334415
ELLGSSDLPI	10	Unmodified	_ELLGSSDLPI_					0	0	0		ENST00000484775.1_1_1:28887181-28904036:+|nuORF	ENST00000484775.1_1_1:28887181-28904036:+|nuORF	ENST00000484775.1_1_1:28887181-28904036:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.800537109375	2	522.284597	1042.55464	-0.44124	-0.00023045	0.018917	9.8803E-06	-0.42233	-0.00022057	522.2850560627945	48.196	0.89874	48.263	47.936	48.835	0.066795					32	19	3	0	0	0	0.03519	1	4896	4896		40.778	15.204	1	338030			12153	15314	8426	8442	13597	13597					0.035065996579760395
ELLHEKGPE	9	Unmodified	_ELLHEKGPE_					0	0	0		ENSG00000270629|ENST00000619423|NBPF14	ENSG00000270629|ENST00000619423|NBPF14	ENSG00000270629|ENST00000619423|NBPF14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.302490234375	2	526.274564	1050.53457	-0.74699	-0.00039312	-1.7696	-0.00093128	-2.5166	-0.0013244	526.2736782995383	65.582	0.77921	65.309	65.017	65.796	-0.27282					62	21	4	0	0	0	0.024381	1	7766	7766		21.96	6.3181	1	3655900			12154	11000	8427	8443	13598	13598					0.011328487179980584
ELLHEKGPE	9	Unmodified	_ELLHEKGPE_					0	0	0		ENSG00000270629|ENST00000619423|NBPF14	ENSG00000270629|ENST00000619423|NBPF14	ENSG00000270629|ENST00000619423|NBPF14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.302978515625	2	526.274564	1050.53457	-0.010737	-5.6508E-06	-2.5488	-0.0013414	-2.5595	-0.001347	526.2732555008118	65.299	0.8523	65.337	64.967	65.82	0.037376					68	23	4	0	0	0	0.024457	1	7664	7664		21.96	15.647	1	4054800			12155	11000	8427	8443	13599	13599					0.011328487179980584
ELLILQKP	8	Unmodified	_ELLILQKP_					0	0	0		ENST00000526413.5_1_1:151751382-151751454:-|nuORF	ENST00000526413.5_1_1:151751382-151751454:-|nuORF	ENST00000526413.5_1_1:151751382-151751454:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.8036804199219	2	477.305136	952.595718	0.032115	1.5329E-05	0.69838	0.00033334	0.7305	0.00034867	477.30511288591657	91.437	0.76231	91.424	91.115	91.878	-0.012383					37	17	3	0	0	0	0.027866	1	11513	11513		16.473	8.7829	1	1404700			12156	16121	8428	8444	13600	13600					0.11752405488084605
ELLIQARE	8	Unmodified	_ELLIQARE_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2918701171875	2	486.279649	970.544745	-0.41056	-0.00019965	-0.97925	-0.00047619	-1.3898	-0.00067583	486.2792954617401	81.82	0.21494	81.678	81.483	81.698	-0.14249					5	4	2	0	0	0	0.027866	1	9822	9822		23.042	1.0826	1	92828	+		12157	27802	8429	8445	13601	13601					0.05829456443234449
ELLIRKLPF	9	Unmodified	_ELLIRKLPF_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.8602294921875	2	564.860609	1127.70667	-0.2398	-0.00013545	-0.24518	-0.00013849	-0.48498	-0.00027395	564.8604070714493	66.371	0.65974	66.123	65.782	66.441	-0.2484					57	16	5	0	0	0	0.014013	4	7616	7592;7603;7616;7629		166.78	0	1	4954000			12158	7790	8430	8446	13602;13603;13604;13605	13604					0.14792045196168147
ELLIRKLPF	9	Unmodified	_ELLIRKLPF_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8609619140625	2	564.860609	1127.70667	-0.55212	-0.00031187	0.070219	3.9664E-05	-0.4819	-0.00027221	564.8605761095981	66.329	0.73515	66.116	65.753	66.488	-0.21327					61	18	4	0	0	0	0.013333	4	7589	7589;7601;7613;7625		176.41	0	1	4953700			12159	7790	8430	8446	13606;13607;13608;13609	13606					0.14792045196168147
ELLIRKLPF	9	Unmodified	_ELLIRKLPF_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.8609008789062	2	564.860609	1127.70667	-0.51196	-0.00028919	0.029811	1.6839E-05	-0.48215	-0.00027235	564.8605407379389	66.314	0.7216	66.069	65.732	66.453	-0.24517					61	18	4	0	0	0	0.016871	3	7588	7578;7588;7601		152.47	0	1	5303300			12160	7790	8430	8446	13610;13611;13612	13611					0.14792045196168147
ELLIRRLGNL	10	Unmodified	_ELLIRRLGNL_					0	0	0			REV__ENST00000378239.5_2_2:54040143-54041723:+|nuORF	REV__ENST00000378239.5_2_2:54040143-54041723:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	599.791748046875	2	598.877322	1195.74009	-1.6043	-0.0009608	4.1205	0.0024677	2.5162	0.0015069	598.8796106050858	103.6	0.51459	103.6	103.43	103.94	0					16	12	2	0	0	0	0.03519	1	13276	13276		19.997	4.355	1	66117	+		12161	31398	8431	8447	13613	13613					0.15005046968076385
ELLIRRLGNL	10	Unmodified	_ELLIRRLGNL_					0	0	0			REV__ENST00000378239.5_2_2:54040143-54041723:+|nuORF	REV__ENST00000378239.5_2_2:54040143-54041723:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	598.877322	1195.74009	-0.63927	-0.00038284	3.5246	0.0021108	2.8854	0.001728	598.8790833262794	103.68	0.28008	103.67	103.53	103.81	-0.0032196	0.065147	-0.00012827	NaN	19.997	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63535	+		12162	31398	8431	8447							0.15005046968076385
ELLKALND	8	Unmodified	_ELLKALND_					0	0	0			REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.25616455078125	2	458.260925	914.507297	-0.017447	-7.9954E-06	0.26097	0.00011959	0.24352	0.0001116	458.2603396717418	29.102	0.51117	29.18	29.016	29.527	0.078344					18	12	2	0	0	0	0.027866	1	1710	1710		30.504	11.144	1	88041	+		12163	36788	8432	8448	13614	13614					0.04662365177603078
ELLKDREP	8	Unmodified	_ELLKDREP_					0	0	0		nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENSG00000171903|ENST00000402119|CYP4F11;ENSG00000186526|ENST00000612078|CYP4F8	nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186526|ENST00000612078|CYP4F8	nc|ENSG00000186529|Q08477-2|CYP4F3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2889099121094	2	500.277106	998.53966	-0.17932	-8.9712E-05	-0.50821	-0.00025424	-0.68753	-0.00034396	500.2767375439279	49.423	0.84629	49.27	49.076	49.922	-0.15276					39	22	3	0	0	0	0.027866	1	5072	5072		15.642	0	1	588660			12164	9559;9558	8433	8449	13615	13615					0.04033152580609567
ELLKDVKET	9	Unmodified	_ELLKDVKET_					0	0	0		ENSG00000215029|ENST00000642911|TCP11X2;ENSG00000268235|ENST00000622971|TCP11X1;nc|ENSG00000268235|B4DZS4-2|TCP11X1	ENSG00000215029|ENST00000642911|TCP11X2	ENSG00000215029|ENST00000642911|TCP11X2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7921142578125	2	537.805697	1073.59684	-0.11104	-5.9718E-05	0.28266	0.00015202	0.17162	9.2297E-05	537.8056294206285	37.29	0.76474	37.097	36.851	37.616	-0.193					40	19	3	0	0	0	0.024477	1	3059	3059		20.947	0	1	857650			12165	10579	8434	8450	13616	13616					0.06298575066330159
ELLKELLTA	9	Unmodified	_ELLKELLTA_					0	0	0			REV__ENST00000519798.1_1_8:75897034-75924708:+|nuORF	REV__ENST00000519798.1_1_8:75897034-75924708:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2697143554688	2	515.313158	1028.61176	-0.37013	-0.00019073	0.61901	0.00031898	0.24888	0.00012825	515.3130913165196	49.105	0.35371	48.952	48.792	49.146	-0.15277					14	9	2	0	0	0	0.024021	1	5053	5053		40.778	0	1	132540	+		12166	22573	8435	8451	13617	13617					0.098600669343341
ELLKHQLLG	9	Unmodified	_ELLKHQLLG_					0	0	0		nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT;ENSG00000186868|ENST00000262410|MAPT	nc|ENSG00000186868|P10636|MAPT	nc|ENSG00000186868|P10636|MAPT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.302490234375	2	525.818941	1049.62333	-0.31261	-0.00016438	-1.8292	-0.00096184	-2.1418	-0.0011262	525.818183554039	65.822	0.53323	65.549	65.263	65.796	-0.27282					21	14	3	0	0	0	0.024477	1	7766	7766		14.865	0.72775	1	168860			12167	9584	8436	8452	13618	13618					0.10050308748327552
ELLKLQALL	9	Unmodified	_ELLKLQALL_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2894287109375	2	520.839342	1039.66413	0.64354	0.00033518	-0.77777	-0.0004051	-0.13423	-6.9914E-05	520.8388212331835	62.983	0.52872	63.037	62.845	63.373	0.054104					22	13	2	0	0	0	0.024511	1	7238	7238		32.812	11.865	1	396160			12168	3706	8437	8453	13619	13619					0.14588650067935305
ELLKNLVIYI	10	Unmodified	_ELLKNLVIYI_					0	0	0		ENST00000493957.5_1_3:69124493-69129504:-|nuORF;ENST00000466763.5_1_3:69124493-69129504:-|nuORF	ENST00000493957.5_1_3:69124493-69129504:-|nuORF	ENST00000493957.5_1_3:69124493-69129504:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.5873107910156	3	406.588313	1216.74311	-0.18538	-7.5374E-05	-2.4749	-0.0010063	-2.6603	-0.0010816	406.5876067950022	25.442	1.4271	25.215	24.887	26.314	-0.22683					124	36	6	0	0	0	0.88896	1	1247	1247		54.776	3.5836	1	39997000			12169	14821	8438	8454	13620	13620					0.14340877302220179
ELLKPVHP	8	Unmodified	_ELLKPVHP_					0	0	0			REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2450256347656	2	466.781828	931.549102	1.1064	0.00051646	1.9042	0.00088884	3.0106	0.0014053	466.78292323968196	32.959	0.33739	33.022	32.845	33.182	0.062885					13	8	2	0	0	0	0.027866	1	2258	2258		24.203	10.427	1	47028	+		12170	33443	8439	8455	13621	13621					0.08058965656800865
ELLKPVHP	8	Unmodified	_ELLKPVHP_					0	0	0			REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.781828	931.549102	-0.092457	-4.3157E-05	0.12543	5.8549E-05	0.032973	1.5391E-05	466.7816236823353	32.979	0.37302	32.748	32.503	32.876	-0.23107	-0.087306	-0.00030279	NaN	17.365	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111960	+		12171	33443	8439	8455							0.08058965656800865
ELLKPVHP	8	Unmodified	_ELLKPVHP_					0	0	0			REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.781828	931.549102	0.14839	6.9265E-05	-0.13753	-6.4198E-05	0.010855	5.0668E-06	466.7815782700173	33.004	0.36858	32.804	32.609	32.977	-0.20019	-0.030732	-0.00054828	NaN	17.365	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132760	+		12172	33443	8439	8455							0.08058965656800865
ELLKPVHP	8	Unmodified	_ELLKPVHP_					0	0	0			REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	REV__ENST00000480988.5_1_1:113093306-113134150:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.781828	931.549102	-0.66449	-0.00031017	0.53768	0.00025098	-0.12681	-5.9192E-05	466.78198937424804	32.932	0.36185	32.766	32.556	32.918	-0.16565	-0.068921	8.2079E-05	NaN	17.365	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128040	+		12173	33443	8439	8455							0.08058965656800865
ELLKRPSL	8	Unmodified	_ELLKRPSL_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2796936035156	2	478.300384	954.586216	1.7485	0.00083633	-1.8355	-0.0008779	-0.086907	-4.1568E-05	478.2994927480495	59.502	0.84445	59.502	59.07	59.914	0					37	22	2	0	0	0	0.027866	1	6733	6733		55.504	7.5886	1	706890	+		12174	28740	8440	8456	13622	13622					0.10710637202555517
ELLKRPSLGRP	11	Unmodified	_ELLKRPSLGRP_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5925598144531	3	422.594461	1264.76155	-0.08907	-3.7641E-05	-4.0755	-0.0017223	-4.1646	-0.0017599	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0471	1	5170	5170		25.892	0.76573	1	15587000	+		12175	28740	8441	8457	13623	13623					0.13976431996798055
ELLKRSEKL	9	Unmodified	_ELLKRSEKL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3428955078125	2	558.342781	1114.67101	-0.50088	-0.00027966	0.088402	4.9359E-05	-0.41248	-0.00023031	558.3426811463291	30.203	0.50949	29.959	29.696	30.205	-0.24415					31	11	4	0	0	0	0.15388	1	1910	1910		98.582	13.421	1	451870			12176	1998	8442	8458	13624	13624					0.11825962948501001
ELLKRSEKL	9	Unmodified	_ELLKRSEKL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.342781	1114.67101	-0.83519	-0.00046632	0.45689	0.0002551	-0.3783	-0.00021122	558.3428664160693	30.11	0.54609	29.932	29.697	30.243	-0.17818	-0.026906	0.00038008	NaN	98.582	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466860			12177	1998	8442	8458							0.11825962948501001
ELLKRSEKL	9	Unmodified	_ELLKRSEKL_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.342781	1114.67101	-0.3147	-0.00017571	-0.13372	-7.4663E-05	-0.44842	-0.00025037	558.342557912397	30.135	0.55164	29.985	29.75	30.301	-0.14952	0.02681	-0.00027945	NaN	98.582	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424210			12178	1998	8442	8458							0.11825962948501001
ELLKRTAL	8	Unmodified	_ELLKRTAL_					0	0	0		ENSG00000115947|ENST00000392857|ORC4;ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENSG00000115947|ENST00000392857|ORC4	ENSG00000115947|ENST00000392857|ORC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.3009338378906	2	472.300384	942.586216	-0.38322	-0.00018099	0.148	6.9901E-05	-0.23522	-0.00011109	472.3002928308647	38.125	0.90954	37.945	37.701	38.611	-0.17929					69	25	4	0	0	0	0.30538	3	3122	3110;3122;3134		110.34	0	1	4331100			12179	3502	8443	8459	13625;13626;13627	13626					0.112626372025602
ELLKRTAL	8	Unmodified	_ELLKRTAL_					0	0	0		ENSG00000115947|ENST00000392857|ORC4;ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENSG00000115947|ENST00000392857|ORC4	ENSG00000115947|ENST00000392857|ORC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.30035400390625	2	472.300384	942.586216	-0.67726	-0.00031987	0.35924	0.00016967	-0.31803	-0.0001502	472.30040648228885	38.2	0.89245	37.979	37.761	38.653	-0.22149					66	24	4	0	0	0	0.30538	1	3133	3133		110.34	0	1	4825200			12180	3502	8443	8459	13628	13628					0.112626372025602
ELLKRTAL	8	Unmodified	_ELLKRTAL_					0	0	0		ENSG00000115947|ENST00000392857|ORC4;ENST00000495601.1_1_2:148716324-148733527:-|nuORF	ENSG00000115947|ENST00000392857|ORC4	ENSG00000115947|ENST00000392857|ORC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.300048828125	2	472.300384	942.586216	-0.79651	-0.00037619	0.47575	0.0002247	-0.32076	-0.00015149	472.30046146429584	38.196	0.98843	37.978	37.755	38.744	-0.21848					66	27	4	0	0	0	0.39824	1	3127	3127		97.473	0	1	4220900			12181	3502	8443	8459	13629	13629					0.112626372025602
ELLKRVDLA	9	Unmodified	_ELLKRVDLA_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENST00000472157.1_1_1:46806507-46807258:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7857666015625	2	528.824224	1055.63389	-0.011635	-6.1526E-06	0.23568	0.00012464	0.22405	0.00011848	528.8240835210878	71.979	0.89381	71.704	71.433	72.327	-0.27509					34	21	3	0	0	0	0.023837	1	8501	8501		54.776	8.8041	1	167220			12182	3633	8444	8460	13630	13630					0.10830291402771763
ELLKRVDLA	9	Unmodified	_ELLKRVDLA_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENST00000472157.1_1_1:46806507-46807258:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.824224	1055.63389	0.32014	0.0001693	-1.2459	-0.00065886	-0.92576	-0.00048956	528.823505513415	71.717	0.55234	71.727	71.471	72.024	0.010277	0.048425	-0.0013662	NaN	54.776	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339390			12183	3633	8444	8460							0.10830291402771763
ELLKRVDLA	9	Unmodified	_ELLKRVDLA_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENST00000472157.1_1_1:46806507-46807258:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.824224	1055.63389	-0.03127	-1.6536E-05	0.24603	0.00013011	0.21476	0.00011357	528.8241037310714	71.926	0.8077	71.664	71.322	72.13	-0.26199	-0.014634	0.00021169	NaN	54.776	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373830			12184	3633	8444	8460							0.10830291402771763
ELLKRVDLA	9	Unmodified	_ELLKRVDLA_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant;ENST00000472157.1_1_1:46806507-46807258:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.824224	1055.63389	0.23136	0.00012235	0.23578	0.00012469	0.46714	0.00024704	528.8239660306144	71.762	0.59679	71.556	71.344	71.941	-0.20613	-0.1232	0.00020086	NaN	54.776	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491390			12185	3633	8444	8460							0.10830291402771763
ELLLAWVE	8	Unmodified	_ELLLAWVE_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.76141357421875	2	486.773668	971.532783	0.0038928	1.8949E-06	-2.2728	-0.0011063	-2.2689	-0.0011044	486.7719688424167	63.64	0.28922	63.388	63.264	63.553	-0.25141					9	7	2	0	0	0	0.027866	1	7425	7425		26.796	8.4717	1	130200	+		12186	24617	8445	8461	13631	13631					0.0458783970004788
ELLLKKVT	8	Unmodified	_ELLLKKVT_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.76678466796875	2	472.312961	942.611368	1.3208	0.00062384	-1.3942	-0.00065848	-0.073356	-3.4647E-05	472.31215323453836	70.886	0.79623	70.886	70.656	71.453	0					37	19	3	0	0	0	0.027866	1	8621	8621		11.511	0	1	690410			12187	6240	8446	8462	13632	13632					0.13776692005137647
ELLLKNGIAF	10	Unmodified	_ELLLKNGIAF_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.N571Ifs*45|1|0.16|ENSG00000278540|chr17:37257817-37257817|T/-|frameshift_variant	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3203125	2	559.334424	1116.6543	0.13495	7.548E-05	-0.81321	-0.00045485	-0.67826	-0.00037938	559.333837129816	72.609	0.5537	72.344	72.084	72.638	-0.26479					15	12	2	0	0	0	0.03519	1	8544	8544		20.947	8.1352	1	121670			12188	11066	8447	8463	13633	13633					0.10063462062566941
ELLLLFLFASN	11	Unmodified	_ELLLLFLFASN_					0	0	0			REV__ENST00000369535.4_1_1:115248605-115248731:-|nuORF	REV__ENST00000369535.4_1_1:115248605-115248731:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2647399902344	3	427.248068	1278.72238	0.28537	0.00012192	-0.31721	-0.00013553	-0.031835	-1.3602E-05	427.5820129618516	54.688	0.11152	54.787	54.733	54.845	0.098015					4	2	2	0	0	0	0.024797	1	5916	5916		10.998	2.9638	1	37476	+		12189	31093	8448	8464	13634	13634					0.09416286922555628
ELLLLVEIF	9	Unmodified	_ELLLLVEIF_					0	0	0		ENST00000265339.6_1_5:133727004-133727082:+|nuORF	ENST00000265339.6_1_5:133727004-133727082:+|nuORF	ENST00000265339.6_1_5:133727004-133727082:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8215942382812	2	544.833726	1087.6529	0.99531	0.00054228	2.8424	0.0015487	3.8378	0.0020909	544.8354002020535	63.697	0.17831	63.751	63.697	63.875	0.054104					7	4	2	0	0	0	0.024535	1	7399	7399		12.207	4.5166	1	113800			12190	11588	8449	8465	13635	13635					0.11257827973804524
ELLLMKKN	8	Unmodified	_ELLLMKKN_					0	0	0		ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000411618.1_1_9:30800054-30800297:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.7804260253906	2	494.79662	987.578688	0.15811	7.8231E-05	-4.3204	-0.0021377	-4.1623	-0.0020595	494.7944519005134	89.48	0.51451	89.342	89.148	89.663	-0.13761					20	11	3	0	0	0	0.027866	1	10900	10900		45.952	5.3793	1	89602			12191	14339	8450	8466	13636	13636					0.08440161610633368
ELLLNIIAE	9	Unmodified	_ELLLNIIAE_					0	0	0			REV__ENSG00000157999|ENST00000409061|ANKRD61	REV__ENSG00000157999|ENST00000409061|ANKRD61	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.303955078125	2	514.305332	1026.59611	-0.62586	-0.00032188	-2.4984	-0.001285	-3.1243	-0.0016068	514.3039583290223	29.756	0.68835	29.763	29.392	30.08	0.0069504					47	16	4	0	0	0	0.48817	1	1845	1845		60.118	5.3419	1	2047000	+		12192	25164	8451	8467	13637	13637					0.08387780417297108
ELLLPRKLVRI	11	Unmodified	_ELLLPRKLVRI_					0	0	0		ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000460343.5_1_3:53260493-53260973:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7608642578125	3	450.63789	1348.89184	-0.087678	-3.9511E-05	4.193	0.0018895	4.1053	0.00185	450.64045307177463	39.084	0.34702	38.858	38.636	38.983	-0.2257					13	9	2	0	0	0	0.02486	1	3279	3279		12.957	7.2587	1	423770			12193	14651	8452	8468	13638	13638					0.23135027995772361
ELLLRIAR	8	Unmodified	_ELLLRIAR_					0	0	0			REV__ENST00000607453.1_1_1:245132959-245133256:-|nuORF	REV__ENST00000607453.1_1_1:245132959-245133256:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.8013916015625	2	492.321651	982.62875	-0.79022	-0.00038904	-0.093654	-4.6108E-05	-0.88388	-0.00043515	492.32170398133417	36.443	1.0044	36.401	35.726	36.73	-0.042454					51	27	3	0	0	0	0.027866	1	2827	2827		24.203	1.1603	1	429320	+		12194	35952	8453	8469	13639	13639					0.136740323308004
ELLLRIAR	8	Unmodified	_ELLLRIAR_					0	0	0			REV__ENST00000607453.1_1_1:245132959-245133256:-|nuORF	REV__ENST00000607453.1_1_1:245132959-245133256:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	492.321651	982.62875	-0.18846	-9.2784E-05	-1.0964	-0.00053977	-1.2848	-0.00063256	492.320780950901	41.632	0.47005	41.499	41.319	41.789	-0.1322					20	12	2	0	0	0	0.027866	1	3772	3772		45.952	16.802	1	141810	+		12195	35952	8453	8469	13640	13640					0.136740323308004
ELLLSAMRA	9	Unmodified	_ELLLSAMRA_					0	0	0			REV__nc|ENSG00000164074|Q0P651-3|ABHD18	REV__nc|ENSG00000164074|Q0P651-3|ABHD18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.30859375	2	502.283877	1002.5532	0.036614	1.839E-05	-3.9626	-0.0019903	-3.926	-0.001972	502.28168234572695	32.95	0.56724	32.75	32.489	33.056	-0.20019					21	13	2	0	0	0	0.024541	1	2329	2329		17.365	5.8539	1	576410	+		12196	25686	8454	8470	13641	13641					0.052026870882059484
ELLLSIVTT	9	Unmodified	_ELLLSIVTT_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7806091308594	2	494.799883	987.585213	-0.09917	-4.9069E-05	-3.2402	-0.0016032	-3.3393	-0.0016523	494.7984125332797	89.044	0.62556	88.916	88.617	89.242	-0.12774					23	14	3	0	0	0	0.024405	1	10896	10896		44.117	0	1	113260	+		12197	27894	8455	8471	13642	13642					0.09092378042998916
ELLLTRLM	8	Unmodified	_ELLLTRLM_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.78057861328125	2	494.79662	987.578688	0.12631	6.25E-05	3.3554	0.0016602	3.4817	0.0017227	494.79816533140354	89.046	0.66683	88.908	88.649	89.316	-0.13761					19	15	2	0	0	0	0.027866	1	10876	10876		49.442	1.7842	1	91542	+		12198	25466	8456	8472	13643	13643					0.08440161610633368
ELLLVAAASP	10	Unmodified	_ELLLVAAASP_					0	0	0		ENST00000340622.7_1_7:149170266-149170389:-|nuORF	ENST00000340622.7_1_7:149170266-149170389:-|nuORF	ENST00000340622.7_1_7:149170266-149170389:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2633056640625	2	492.292225	982.569897	0.87848	0.00043247	-0.95458	-0.00046993	-0.076097	-3.7462E-05	492.2917007393428	71.007	0.75235	71.007	70.7	71.453	0					48	18	4	0	0	0	0.03519	1	8589	8589		40.778	0	1	3011400			12199	12472	8457	8473	13644	13644					0.07791511245795846
ELLLVELP	8	Unmodified	_ELLLVELP_					0	0	0			REV__nc|ENSG00000257923|P39880-4|CUX1	REV__nc|ENSG00000257923|P39880-4|CUX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7718200683594	2	463.283869	924.553185	-0.44632	-0.00020677	0.55737	0.00025822	0.11105	5.1449E-05	463.284131892281	23.192	0.19789	23.192	23.123	23.321	0					7	4	2	0	0	0	0.027866	1	888	888		25.45	7.1258	1	111170	+		12200	29093	8458	8474	13645	13645					0.0878901035985109
ELLMPQLQFYK	11	Unmodified	_ELLMPQLQFYK_					0	0	0			REV__nc|ENSG00000134504|Q719H9|KCTD1	REV__nc|ENSG00000134504|Q719H9|KCTD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2665710449219	3	470.588096	1408.74246	-0.5105	-0.00024023	-0.25468	-0.00011985	-0.76517	-0.00036008	470.58788726570174	29.599	0.29155	29.427	29.284	29.575	-0.17258					9	6	2	0	0	0	0.02473	1	1839	1839		47.228	17.677	1	66618	+		12201	23459	8459	8475	13646	13646					0.054437145908650564
ELLMSELHL	9	Unmodified	_ELLMSELHL_					0	0	0			REV__ENSG00000100865|ENST00000216756|CINP	REV__ENSG00000100865|ENST00000216756|CINP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.335205078125	2	542.788992	1083.56343	-1.0261	-0.00055695	0.96341	0.00052293	-0.062682	-3.4023E-05	543.2909511101794	53.035	0.89011	52.888	52.53	53.42	-0.14723					43	23	2	0	0	0	0.024487	1	5723	5723		31.955	13.693	1	260300	+		12202	21157	8460	8476	13647	13647					0.024992500227881465
ELLMVSNN	8	Unmodified	_ELLMVSNN_					0	0	0		ENSG00000171014|ENST00000307033|OR4D5	ENSG00000171014|ENST00000307033|OR4D5	ENSG00000171014|ENST00000307033|OR4D5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.26361083984375	2	460.23131	918.448068	-0.50899	-0.00023425	-2.9871	-0.0013748	-3.4961	-0.001609	460.2298558843728	42.093	0.46011	41.862	41.695	42.155	-0.23186					23	12	2	0	0	0	0.027866	1	3772	3772		23.042	3.6825	1	368500			12203	8103	8461	8477	13648	13648					-0.014418541082136471
ELLNDFAGPL	10	Unmodified	_ELLNDFAGPL_					0	0	0			REV__ENSG00000076604|ENST00000262395|TRAF4;REV__ENST00000502593.2_1_5:143131699-143132191:-|nuORF	REV__ENSG00000076604|ENST00000262395|TRAF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.3049926757812	2	544.784764	1087.55498	-2.382	-0.0012977	-2.3228	-0.0012654	-4.7048	-0.0025631	544.783253534808	60.193	1.1577	60.272	59.721	60.879	0.078888					64	30	3	0	0	0	0.03519	1	6850	6850		41.427	13.172	1	851400	+		12204	20570;33936	8462	8478	13649	13649					0.014700193778253379
ELLNPDDLR	9	Unmodified	_ELLNPDDLR_					0	0	0			REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7302856445312	2	542.785296	1083.55604	0.38015	0.00020634	3.1668	0.0017189	3.547	0.0019252	542.7868199134297	51.474	0.63676	51.363	51.09	51.726	-0.11163					41	16	3	0	0	0	0.024427	1	5330	5330		26.693	0	1	1144000	+		12205	37474	8463	8479	13650	13650					0.017602337466996687
ELLNPDDLR	9	Unmodified	_ELLNPDDLR_					0	0	0			REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.785296	1083.55604	-0.46023	-0.0002498	3.0163	0.0016372	2.5561	0.0013874	542.7870472391088	51.761	0.44213	51.761	51.535	51.977	0	0.1789	-0.00048808	NaN	26.693	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214120	+		12206	37474	8463	8479							0.017602337466996687
ELLNPDDLR	9	Unmodified	_ELLNPDDLR_					0	0	0			REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.785296	1083.55604	-1.0731	-0.00058246	4.4901	0.0024372	3.417	0.0018547	542.787893278398	51.909	0.44081	51.762	51.544	51.985	-0.14735	0.17949	0.0011118	NaN	26.693	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287110	+		12207	37474	8463	8479							0.017602337466996687
ELLNPDDLR	9	Unmodified	_ELLNPDDLR_					0	0	0			REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	REV__SEMA5A|p.A738D|1|0.17|ENSG00000112902|chr5:9066507-9066507|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.785296	1083.55604	-1.713	-0.00092979	4.7535	0.0025802	3.0405	0.0016504	542.7878500927354	51.647	0.45189	51.734	51.511	51.963	0.087006	0.15156	0.0013978	NaN	26.693	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212760	+		12208	37474	8463	8479							0.017602337466996687
ELLPKNDEP	9	Unmodified	_ELLPKNDEP_					0	0	0			REV__YIPF4|p.L81M|1|0.43|ENSG00000119820|chr2:32292184-32292184|T/A|missense_variant	REV__YIPF4|p.L81M|1|0.43|ENSG00000119820|chr2:32292184-32292184|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2644653320312	2	527.774396	1053.53424	-0.71509	-0.00037741	-3.5791	-0.001889	-4.2942	-0.0022664	527.7729869884992	48.823	0.50185	48.671	48.398	48.9	-0.15277					21	13	2	0	0	0	0.024323	1	4943	4943		53.351	9.2347	1	101850	+		12209	22492	8464	8480	13651	13651					0.009614289981300317
ELLPKRLS	8	Unmodified	_ELLPKRLS_					0	0	0			REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2772216796875	2	478.300384	954.586216	0.75379	0.00036054	-0.31018	-0.00014836	0.44361	0.00021218	478.3004306162497	84.916	0.40593	84.758	84.657	85.063	-0.15869					12	9	2	0	0	0	0.027866	1	10295	10295		34.173	0	1	59857	+		12210	25498	8465	8481	13652	13652					0.10710637202555517
ELLPKTPI	8	Unmodified	_ELLPKTPI_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2692565917969	2	455.784036	909.553519	0.0265	1.2078E-05	0.59069	0.00026923	0.61719	0.00028131	455.7852144965366	45.114	0.44725	45.114	44.862	45.31	0					18	12	2	0	0	0	0.027866	1	4390	4390		82.305	0	1	411390			12211	896	8466	8482	13653	13653					0.09512430079701062
ELLPKTPI	8	Unmodified	_ELLPKTPI_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2692565917969	2	455.784036	909.553519	0.2614	0.00011914	2.6727	0.0012182	2.9341	0.0013373	455.7851259712546	45.543	1.1005	45.543	45.278	46.378	0					49	31	2	0	0	0	0.027866	1	4390	4390		82.305	0	1	771310			12212	896	8466	8482	13654	13654					0.09512430079701062
ELLPKTPI	8	Unmodified	_ELLPKTPI_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2694091796875	2	455.784036	909.553519	0.039942	1.8205E-05	1.521	0.00069324	1.5609	0.00071144	455.78534185273605	45.096	0.30882	45.14	45.002	45.311	0.04388					20	8	3	0	0	0	0.027866	1	4314	4314		65.803	25.231	1	408170			12213	896	8466	8482	13655	13655					0.09512430079701062
ELLPKVHLD	9	Unmodified	_ELLPKVHLD_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2696533203125	2	532.310949	1062.60735	-1.0562	-0.00056221	-0.22436	-0.00011943	-1.2805	-0.00068164	532.8106736434278	83.754	0.94519	83.78	83.13	84.075	0.02655					44	21	3	0	0	0	0.024447	1	10308	10308		13.454	0	1	79144	+		12214	23902	8467	8483	13656	13656					0.07854602511406483
ELLPLVSA	8	Unmodified	_ELLPLVSA_					0	0	0		ENSG00000162062|ENST00000361837|TEDC2;nc|ENSG00000162062|Q7L2K0-2|TEDC2;ENST00000569496.5_1_16:2514507-2514666:+|nuORF	ENSG00000162062|ENST00000361837|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.253662109375	2	421.255111	840.49567	0.65952	0.00027783	-3.5108	-0.001479	-2.8513	-0.0012011	421.2534826375198	83.667	1.0631	83.498	83.119	84.182	-0.16915					54	24	3	0	0	0	1.0239	1	10104	10104		33.516	1.5607	1	627860			12215	6913	8468	8484	13657	13657					0.06904168154289891
ELLPMIPDLP	10	Unmodified	_ELLPMIPDLP_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR;nc|ENSG00000141564|Q8N122-2|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2964477539062	2	569.314843	1136.61513	-0.73197	-0.00041672	4.2051	0.002394	3.4731	0.0019773	569.3170098033506	61.475	0.41748	61.298	61.078	61.496	-0.17739					22	9	4	0	0	0	0.03519	1	6859	6859		24.519	6.2571	1	447710			12216	17112	8469	8485	13658	13658					0.052289937166960954
ELLPRFRS	8	Unmodified	_ELLPRFRS_					0	0	0		nc|ENSG00000136449|Q8TBZ2|MYCBPAP;ENSG00000136449|ENST00000323776|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2912292480469	2	509.295633	1016.57671	0.5009	0.00025511	-0.65328	-0.00033271	-0.15238	-7.7606E-05	509.29529676468695	58.844	0.47283	58.603	58.381	58.854	-0.24165					20	11	2	0	0	0	0.027866	1	6435	6435		60.972	0	1	437330			12217	5017	8470	8486	13659	13659					0.06908868917037125
ELLPRITK	8	Unmodified	_ELLPRITK_					0	0	0			REV__ENST00000450119.1_1_10:92813377-92813905:+|nuORF	REV__ENST00000450119.1_1_10:92813377-92813905:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	485.30821	968.601866	1.1522	0.00055916	-3.4109	-0.0016553	-2.2587	-0.0010962	485.3070893569664	54.676	0.32649	54.47	54.395	54.722	-0.20613					11	8	2	0	0	0	0.027866	1	5825	5825		6.3127	0	1	79362	+		12218	32691	8471	8487	13660	13660					0.11630923719610564
ELLPVSHEL	9	Unmodified	_ELLPVSHEL_					0	0	0			REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.261962890625	2	518.787307	1035.56006	-1.008	-0.00052293	1.2972	0.00067295	0.28918	0.00015002	518.7874039934042	55.897	0.54677	55.74	55.386	55.933	-0.15656					17	14	2	0	0	0	0.024427	1	6050	6050		34.173	3.6689	1	185460	+		12219	25107	8472	8488	13661	13661					0.04370323240414109
ELLPVSPLSPP	11	Unmodified	_ELLPVSPLSPP_					0	0	0			REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8193359375	2	574.831714	1147.64888	0.70858	0.00040731	-2.8105	-0.0016156	-2.1019	-0.0012082	574.8299580269095	18.725	0.44558	18.569	18.297	18.742	-0.15637					12	8	2	0	0	0	0.024788	1	349	349		19.997	0	1	36147	+		12220	26830	8473	8489	13662	13662					0.0809573848009677
ELLQCNENL	9	Carbamidomethyl (C)	_ELLQC(Carbamidomethyl (C))NENL_	ELLQC(1)NENL		ELLQC(70)NENL		0	1	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.2689208984375	2	566.768788	1131.52302	-0.38757	-0.00021966	-3.0738	-0.0017421	-3.4613	-0.0019618	566.767033488706	40.746	2.4339	40.746	40.281	42.715	0					179	69	5	0	0	0	0.34489	1	3587	3587		69.628	10.846	1	34597000			12221	2730	8474	8490	13663	13663	36				-0.03747716367661269
ELLQLWDL	8	Unmodified	_ELLQLWDL_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2714233398438	2	515.2844	1028.55425	-0.94905	-0.00048903	-1.5527	-0.00080008	-2.5018	-0.0012891	515.2822893947202	48.912	0.41049	48.812	48.581	48.992	-0.1008					13	10	2	0	0	0	0.027866	1	4900	4900		49.442	0	1	197540			12222	9351	8475	8491	13664	13664					0.04111224728740126
ELLQQLKNCL	10	Unmodified	_ELLQQLKNCL_					0	0	0		nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000126012|P41229-4|KDM5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	600.7542114257812	2	601.334098	1200.65364	-0.69359	-0.00041708	-1.8106	-0.0010888	-2.5042	-0.0015059	601.3329064893966	58.626	0.55276	58.717	58.409	58.962	0.091217					25	14	2	0	0	0	0.03519	1	6581	6581		52.937	0	1	497830			12223	4176	8476	8492	13665	13665					0.06134299351219852
ELLQRIIV	8	Unmodified	_ELLQRIIV_					0	0	0		nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2642517089844	2	492.316035	982.617516	0.78485	0.0003864	-0.6695	-0.0003296	0.11536	5.6792E-05	492.3155726750126	71.421	0.66217	71.132	70.802	71.464	-0.28858					23	16	2	0	0	0	0.027866	1	8642	8642		52.299	0	1	307910			12224	6176	8477	8493	13666	13666					0.1255121023666561
ELLQWEDR	8	Unmodified	_ELLQWEDR_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3169555664062	2	544.772188	1087.52982	0.11293	6.152E-05	-3.6652	-0.0019967	-3.5523	-0.0019352	544.7702649339222	87.64	0.4821	87.659	87.388	87.87	0.018555					18	11	2	0	0	0	0.027866	1	10919	10919		26.693	16.987	1	141400			12225	662	8478	8494	13667	13667					-0.010440354247748473
ELLRDFLA	8	Unmodified	_ELLRDFLA_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.26580810546875	2	488.776742	975.538931	-0.3484	-0.00017029	-0.19859	-9.7067E-05	-0.54699	-0.00026736	488.7766396982319	55.545	1.0297	55.33	54.931	55.961	-0.21551					85	28	6	0	0	0	0.027866	1	5979	5979		53.351	15.54	1	3921500			12226	1596	8479	8495	13668	13668					0.050183579315557836
ELLRERVQ	8	Unmodified	_ELLRERVQ_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2802734375	2	521.803823	1041.59309	0.46834	0.00024438	2.6402	0.0013777	3.1085	0.001622	521.8053247067523	59.326	0.81348	59.326	58.999	59.813	0					64	21	4	0	0	0	0.027866	1	6819	6819		27.882	4.3595	1	1596000			12227	8335	8480	8496	13669	13669					0.073959500831279
ELLRKEEY	8	Unmodified	_ELLRKEEY_					0	0	0		ENST00000596818.1_1_19:42754481-42759151:-|nuORF;ENSG00000105722|ENST00000222329|ERF	ENST00000596818.1_1_19:42754481-42759151:-|nuORF	ENST00000596818.1_1_19:42754481-42759151:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7383422851562	2	540.290214	1078.56587	-0.15014	-8.1117E-05	-3.4208	-0.0018482	-3.5709	-0.0019293	540.2879214579425	36.885	0.66391	36.692	36.375	37.039	-0.193					24	16	2	0	0	0	0.027866	1	2922	2922		42.396	3.59	1	182170			12228	2716	8481	8497	13670	13670					0.029734217520854145
ELLRKYVL	8	Unmodified	_ELLRKYVL_					0	0	0		ENST00000419271.1_1_7:63353684-63354623:+|nuORF;GABPA|p.I434Nfs*22|1|0.06|ENSG00000154727|chr21:25769165-25769166|-/TAAT|frameshift_variant;ENSG00000154727|ENST00000400075|GABPA	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.3240356445312	2	517.32386	1032.63317	-0.20176	-0.00010437	-0.28492	-0.00014739	-0.48668	-0.00025177	517.3235834900639	46.938	0.77801	46.841	46.572	47.35	-0.096649					57	20	4	0	0	0	0.30538	1	4574	4574		110.34	0	1	3035100			12229	6430	8482	8498	13671	13671					0.11815496753706611
ELLRKYVL	8	Unmodified	_ELLRKYVL_					0	0	0		ENST00000419271.1_1_7:63353684-63354623:+|nuORF;GABPA|p.I434Nfs*22|1|0.06|ENSG00000154727|chr21:25769165-25769166|-/TAAT|frameshift_variant;ENSG00000154727|ENST00000400075|GABPA	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.3240356445312	2	517.32386	1032.63317	0.010586	5.4761E-06	0.062792	3.2484E-05	0.073377	3.796E-05	517.3237471151097	50.524	1.206	50.416	50.124	51.33	-0.10802					72	31	4	0	0	0	0.21202	2	5142	5142;5155		138.48	0	1	3433500			12230	6430	8482	8498	13672;13673	13672					0.11815496753706611
ELLRKYVL	8	Unmodified	_ELLRKYVL_					0	0	0		ENST00000419271.1_1_7:63353684-63354623:+|nuORF;GABPA|p.I434Nfs*22|1|0.06|ENSG00000154727|chr21:25769165-25769166|-/TAAT|frameshift_variant;ENSG00000154727|ENST00000400075|GABPA	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.32373046875	2	517.32386	1032.63317	0.3501	0.00018111	-0.22955	-0.00011875	0.12055	6.2362E-05	517.3236085280495	50.785	1.0914	50.509	50.262	51.353	-0.27643					73	28	4	0	0	0	0.30538	2	5173	5173;5184		110.34	0	1	3974200			12231	6430	8482	8498	13674;13675	13674					0.11815496753706611
ELLRKYVL	8	Unmodified	_ELLRKYVL_					0	0	0		ENST00000419271.1_1_7:63353684-63354623:+|nuORF;GABPA|p.I434Nfs*22|1|0.06|ENSG00000154727|chr21:25769165-25769166|-/TAAT|frameshift_variant;ENSG00000154727|ENST00000400075|GABPA	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2507934570312	2	517.32386	1032.63317	0.28041	0.00014506	-0.6393	-0.00033072	-0.35889	-0.00018566	517.3233681060798	47.219	0.83844	46.95	46.695	47.534	-0.26939					50	22	4	0	0	0	0.027866	1	4573	4573		40.573	0	1	2663300			12232	6430	8482	8498	13676	13676					0.11815496753706611
ELLRKYVL	8	Unmodified	_ELLRKYVL_					0	0	0		ENST00000419271.1_1_7:63353684-63354623:+|nuORF;GABPA|p.I434Nfs*22|1|0.06|ENSG00000154727|chr21:25769165-25769166|-/TAAT|frameshift_variant;ENSG00000154727|ENST00000400075|GABPA	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.32421875	2	517.32386	1032.63317	0.34499	0.00017847	-0.33338	-0.00017247	0.011606	6.004E-06	517.3235714556768	50.655	0.66217	50.474	50.172	50.834	-0.18071					50	17	4	0	0	0	0.27193	3	5149	5149;5160;5173		123.99	0	1	3449000			12233	6430	8482	8498	13677;13678;13679	13677					0.11815496753706611
ELLRPQPPL	9	Unmodified	_ELLRPQPPL_					0	0	0			REV__ENST00000298532.2_1_9:139276772-139277807:-|nuORF	REV__ENST00000298532.2_1_9:139276772-139277807:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8169555664062	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.75397	1	11085	11085		42.396	0	1	3741200	+		12234	30025	8483	8499	13680	13680					0.09498308748334239
ELLRPQPPL	9	Unmodified	_ELLRPQPPL_					0	0	0			REV__ENST00000298532.2_1_9:139276772-139277807:-|nuORF	REV__ENST00000298532.2_1_9:139276772-139277807:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8167724609375	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.75397	1	11043	11043		42.396	6.7778	1	3781500	+		12235	30025	8483	8499	13681	13681					0.09498308748334239
ELLRQEALSI	10	Unmodified	_ELLRQEALSI_					0	0	0			REV__ENSG00000131370|ENST00000383791|SH3BP5	REV__ENSG00000131370|ENST00000383791|SH3BP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	587.2963256835938	2	586.337695	1170.66084	-1.8025	-0.0010569	1.5141	0.00088779	-0.28841	-0.0001691	586.3385702036453	73.241	1.0601	73.241	72.493	73.553	0					78	26	4	0	0	0	0.03519	1	8963	8963		21.686	0	1	1980200	+		12236	23201	8484	8500	13682	13682					0.08233355223296712
ELLRVSSP	8	Unmodified	_ELLRVSSP_					0	0	0		ENST00000495176.5_1_7:6210346-6210577:-|nuORF	ENST00000495176.5_1_7:6210346-6210577:-|nuORF	ENST00000495176.5_1_7:6210346-6210577:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2770690917969	2	450.761092	899.507631	-0.17715	-7.9851E-05	0.1328	5.9861E-05	-0.044346	-1.999E-05	450.7609014112439	66.809	0.51093	66.833	66.601	67.112	0.023911					18	11	2	0	0	0	0.027866	1	7910	7910		42.396	0	1	240350			12237	15545	8485	8501	13683	13683					0.05385784897475787
ELLSGPWF	8	Unmodified	_ELLSGPWF_					0	0	0			REV__ENST00000568641.1_1_17:5403025-5403450:-|nuORF	REV__ENST00000568641.1_1_17:5403025-5403450:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7710876464844	2	474.744911	947.475269	-0.22088	-0.00010486	-1.9647	-0.00093274	-2.1856	-0.0010376	474.7439450208543	29.637	0.45444	29.488	29.171	29.626	-0.14952					16	10	2	0	0	0	0.027866	1	1775	1775		33.516	30.106	1	43615	+		12238	35350	8486	8502	13684	13684					-0.000570025055253609
ELLSKVEL	8	Unmodified	_ELLSKVEL_					0	0	0		ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.778951	929.543348	-0.12372	-5.7627E-05	-2.3951	-0.0011156	-2.5189	-0.0011732	465.7777970995094	94.162	1.1675	94.161	93.83	94.997	-0.00022888					62	27	3	0	0	0	0.027866	1	11899	11899		30.504	1.3541	1	1062700			12239	2429	8487	8503	13685	13685					0.07575822354476713
ELLSKWAH	8	Unmodified	_ELLSKWAH_					0	0	0			REV__ENST00000361804.4_1_10:112350284-112350798:+|nuORF	REV__ENST00000361804.4_1_10:112350284-112350798:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2626037597656	2	492.269084	982.523616	0.23431	0.00011534	-0.025971	-1.2785E-05	0.20834	0.00010256	492.2689625062128	71.678	0.81229	71.416	70.908	71.72	-0.26199					37	19	2	0	0	0	0.027866	1	8348	8348		79.939	17.832	1	291590	+		12240	30952	8488	8504	13686	13686					0.03165491134370768
ELLSPPFLP	9	Unmodified	_ELLSPPFLP_					0	0	0		ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	ENST00000602367.1_1_6:52531422-52531482:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8102722167969	2	506.789318	1011.56408	-0.32904	-0.00016675	1.488	0.00075412	1.159	0.00058736	507.2895615913377	56.627	0.27947	56.725	56.473	56.752	0.097893					10	7	2	0	0	0	0.024294	1	6235	6235		45.952	0	1	126880			12241	17525	8489	8505	13687	13687					0.058764127341419226
ELLSRFKPL	9	Unmodified	_ELLSRFKPL_					0	0	0		ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.7938842773438	2	551.834591	1101.65463	-0.2905	-0.00016031	-0.79518	-0.00043881	-1.0857	-0.00059912	551.8338454290757	42.431	0.2833	42.457	42.358	42.641	0.026012					13	7	2	0	0	0	0.024427	1	3874	3874		42.396	6.7778	1	109280			12242	10258	8490	8506	13688	13688					0.10786881782428281
ELLSRKLN	8	Unmodified	_ELLSRKLN_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79229736328125	2	486.795466	971.57638	0.10416	5.0705E-05	-2.7264	-0.0013272	-2.6223	-0.0012765	486.794314382751	78.823	0.33566	78.631	78.38	78.716	-0.1921					12	7	2	0	0	0	0.027866	1	9719	9719		53.351	0	1	84925			12243	6489	8491	8507	13689	13689					0.08945449197176458
ELLSRKLN	8	Unmodified	_ELLSRKLN_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7952880859375	2	486.795466	971.57638	0.72162	0.00035128	-0.33092	-0.00016109	0.3907	0.00019019	486.7952193308435	20.124	0.83339	19.9	19.631	20.464	-0.22344					30	16	3	0	0	0	0.47665	1	481	481		87.754	0	1	663200			12244	6489	8491	8507	13690	13690					0.08945449197176458
ELLSSLLPQL	10	Unmodified	_ELLSSLLPQL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.809326171875	2	556.831714	1111.64888	-0.77573	-0.00043195	2.0959	0.0011671	1.3202	0.00073514	556.8325464382725	51.646	0.71656	51.733	51.478	52.195	0.087006					31	19	2	0	0	0	0.03519	1	5482	5482		40.778	9.2484	1	880900			12245	908;4176	8492	8508	13691	13691					0.09751738480099448
ELLSSLPSI	9	Unmodified	_ELLSSLPSI_					0	0	0			REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7922058105469	2	479.776408	957.538263	0.8721	0.00041842	0.93189	0.0004471	1.804	0.00086551	479.7767308705586	51.032	0.33684	50.851	50.647	50.984	-0.18071					14	8	2	0	0	0	0.024381	1	5190	5190		5.9211	0	1	212010	+		12246	30010	8493	8509	13692	13692					0.057795184918632
ELLSSLPSI	9	Unmodified	_ELLSSLPSI_					0	0	0			REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.776408	957.538263	0.11274	5.409E-05	0.63377	0.00030407	0.74651	0.00035816	479.77652333976675	51.195	0.33799	50.919	50.778	51.116	-0.27643	0.033864	-0.00016229	NaN	5.9211	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154000	+		12247	30010	8493	8509							0.057795184918632
ELLTFHSK	8	Unmodified	_ELLTFHSK_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7911071777344	2	487.768917	973.523281	0.65175	0.0003179	-1.2327	-0.00060126	-0.58093	-0.00028336	487.76834701096925	84.314	0.60524	84.176	83.801	84.406	-0.13789					17	13	2	0	0	0	0.027866	1	10153	10153		34.173	7.3764	1	46107			12248	143	8494	8510	13693	13693					0.03546071414530161
ELLTHHFAQL	10	Unmodified	_ELLTHHFAQL_					0	0	0		nc|ENSG00000198909|Q99759-2|MAP3K3;ENSG00000198909|ENST00000361733|MAP3K3	nc|ENSG00000198909|Q99759-2|MAP3K3	nc|ENSG00000198909|Q99759-2|MAP3K3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5535888671875	3	403.552262	1207.63496	0.27663	0.00011164	2.893	0.0011675	3.1696	0.0012791	403.5533249787895	29.472	1.6916	29.299	28.981	30.673	-0.17258					104	39	4	0	0	0	0.98527	1	1798	1798		47.96	13.873	1	3766300			12249	10244	8495	8511	13694	13694					0.03944505771664808
ELLTHSGLEV	10	Unmodified	_ELLTHSGLEV_					0	0	0		ENSG00000176422|ENST00000338146|SPRYD4	ENSG00000176422|ENST00000338146|SPRYD4	ENSG00000176422|ENST00000338146|SPRYD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7976684570312	2	549.295496	1096.57644	-1.6079	-0.0008832	3.3593	0.0018452	1.7514	0.00096204	549.2971717395881	62.502	1.0672	62.263	61.753	62.821	-0.23926					53	30	2	0	0	0	0.64538	1	7275	7275		71.877	10.906	1	2386600			12250	8638	8496	8512	13695	13695					0.03201404406536312
ELLTLAINP	9	Unmodified	_ELLTLAINP_					0	0	0			REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.28369140625	2	492.292225	982.569897	0.8166	0.000402	-1.0309	-0.00050753	-0.21435	-0.00010552	492.2914793371158	71.21	0.43139	71.004	70.833	71.265	-0.20614					16	9	2	0	0	0	0.023655	1	8298	8298		51.193	0	1	224990	+		12251	31146	8497	8513	13696	13696					0.07791511245795846
ELLTRHNL	8	Unmodified	_ELLTRHNL_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.8077392578125	2	498.285266	994.555979	1.0592	0.00052776	-3.9674	-0.0019769	-2.9082	-0.0014491	498.2831747320027	23.118	0.50782	22.927	22.572	23.079	-0.19117					17	10	2	0	0	0	0.027866	1	871	871		30.504	1.3541	1	90538			12252	3973	8498	8514	13697	13697					0.05848278537382612
ELLTVKKRKQ	10	Unmodified	_ELLTVKKRKQ_					0	0	0		nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911-6|MCF2	nc|ENSG00000101977|P10911-6|MCF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.90087890625	2	621.898254	1241.78196	0.28795	0.00017907	3.7257	0.002317	4.0136	0.0024961	621.9003556983982	105.24	0.4091	105.24	105.02	105.43	0.00096893					30	12	3	0	0	0	1.1179	1	13464	13464		19.997	6.5427	1	2214000			12253	2367	8499	8515	13698	13698					0.17073602656591902
ELLVHNKY	8	Unmodified	_ELLVHNKY_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.2911071777344	2	508.282192	1014.54983	-0.33857	-0.00017209	-2.7685	-0.0014072	-3.1071	-0.0015793	508.28044164324086	27.687	0.53997	27.53	27.145	27.685	-0.15664					20	12	3	0	0	0	0.027866	1	1511	1511		26.796	11.154	1	53268	+		12254	20823	8500	8516	13699	13699					0.043137603058426066
ELLVKHGGD	9	Unmodified	_ELLVKHGGD_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2872009277344	2	484.263999	966.513445	-0.31045	-0.00015034	0.68389	0.00033118	0.37343	0.00018084	484.26401019616964	57.017	0.71821	57.017	56.778	57.496	0					70	19	5	0	0	0	0.024436	1	6405	6405		16.473	0	1	3922600			12255	723	8501	8517	13700	13700					0.02884883409149097
ELLVNIAR	8	Unmodified	_ELLVNIAR_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.2951354980469	2	464.284734	926.554916	-0.35757	-0.00016602	-1.911	-0.00088726	-2.2686	-0.0010533	464.2844736440991	48.962	0.47936	48.779	48.521	49	-0.18206					31	12	4	0	0	0	0.027866	1	4842	4842		25.45	1.2474	1	318040	+		12256	24262	8502	8518	13701	13701					0.08870064168456793
ELLVPGAGAP	10	Unmodified	_ELLVPGAGAP_					0	0	0			REV__ENST00000586212.1_1_19:3532513-3533660:+|nuORF	REV__ENST00000586212.1_1_19:3532513-3533660:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7790222167969	2	462.263468	922.512382	0.18365	8.4895E-05	0.6111	0.00028249	0.79475	0.00036738	462.26356065560736	68.084	0.80489	68.084	67.49	68.295	0					38	20	3	0	0	0	0.03519	1	8092	8092		17.365	0	1	345470	+		12257	35593	8503	8519	13702	13702					0.04802669040236651
ELLVPVRYT	9	Unmodified	_ELLVPVRYT_					0	0	0			REV__ENSG00000047230|ENST00000359276|CTPS2	REV__ENSG00000047230|ENST00000359276|CTPS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3169555664062	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	0.92825	1	10509	10509		30.504	1.3541	1	4888900	+		12258	20120	8504	8520	13703	13703					0.08222889028479585
ELLVQLELN	9	Unmodified	_ELLVQLELN_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.80859375	2	535.808239	1069.60193	-0.93924	-0.00050325	0.34328	0.00018393	-0.59595	-0.00031932	535.8085788575313	84.938	1.0803	84.881	84.563	85.643	-0.057617					61	25	3	0	0	0	0.16638	1	10632	10632		95.815	5.2143	1	2010300	+		12259	22952	8505	8521	13704	13704					0.06990878928968414
ELLVRSSLYG	10	Unmodified	_ELLVRSSLYG_					0	0	0			REV__ENSG00000177427|ENST00000323019|MIEF2	REV__ENSG00000177427|ENST00000323019|MIEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7481689453125	2	568.819138	1135.62372	0.214	0.00012172	-0.81065	-0.00046111	-0.59665	-0.00033939	568.8206405777248	69.572	0.41334	69.322	69.236	69.649	-0.25063					12	9	2	0	0	0	0.03519	1	8121	8121		47.657	14.845	1	119100	+		12260	27113	8506	8522	13705	13705					0.06133683677512636
ELLVVGSRP	9	Unmodified	_ELLVVGSRP_					0	0	0		nc|ENSG00000112425|O95278-4|EPM2A;nc|ENSG00000112425|O95278-5|EPM2A;nc|ENSG00000112425|O95278-2|EPM2A;ENSG00000112425|ENST00000367519|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2884826660156	2	485.290017	968.565481	0.2133	0.00010351	-3.8434	-0.0018651	-3.6301	-0.0017616	485.28829372610755	18.064	2.2094	17.932	17.464	19.674	-0.13147					99	44	5	0	0	0	0.75397	1	254	254		42.396	8.2236	1	6599700			12261	18179	8507	8523	13706	13706					0.07994046822909695
ELLVVSSKP	9	Unmodified	_ELLVVSSKP_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.28179931640625	2	486.292225	970.569897	0.60673	0.00029505	-0.4669	-0.00022705	0.13982	6.7994E-05	486.29183526171454	85.851	1.2303	85.851	85.331	86.561	0					52	28	3	0	0	0	0.024405	1	10779	10779		44.117	17.424	1	303760			12262	18723	8508	8524	13707	13707					0.08343511245811897
ELLVVSSKP	9	Unmodified	_ELLVVSSKP_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.292225	970.569897	0.22185	0.00010788	0.35748	0.00017384	0.57933	0.00028173	486.29244943380843	85.883	0.76929	85.688	85.301	86.071	-0.19508	-0.064136	-0.0001253	NaN	98.629	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260920			12263	18723	8508	8524							0.08343511245811897
ELLVVSSKP	9	Unmodified	_ELLVVSSKP_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.292225	970.569897	0.72082	0.00035053	-0.36338	-0.00017671	0.35744	0.00017382	486.2920909048607	85.832	1.4567	85.683	85.03	86.487	-0.14967	-0.069488	-0.0008264	NaN	98.629	55	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236350			12264	18723	8508	8524							0.08343511245811897
ELLVVSSKP	9	Unmodified	_ELLVVSSKP_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.292225	970.569897	0.57888	0.0002815	0.61253	0.00029787	1.1914	0.00057937	486.29261438796334	85.785	1.416	85.648	85.07	86.486	-0.13752	-0.1043	0.00012275	NaN	98.629	60	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273050			12265	18723	8508	8524							0.08343511245811897
ELLVWTGGE	9	Unmodified	_ELLVWTGGE_					0	0	0			REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3230285644531	2	502.258382	1002.50221	-0.43487	-0.00021842	0.83063	0.00041719	0.39576	0.00019877	502.25870890378474	73.602	0.50835	73.338	73.099	73.607	-0.26479					17	12	2	0	0	0	0.024381	1	8685	8685		29.15	1.2673	1	151260	+		12266	32998	8509	8525	13708	13708					0.0010606131500026095
ELLVWTGGE	9	Unmodified	_ELLVWTGGE_					0	0	0			REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.258382	1002.50221	-0.58095	-0.00029178	0.43942	0.0002207	-0.14153	-7.1082E-05	502.2585564815431	73.292	0.3651	73.292	73.034	73.399	0	-0.010239	-0.00018701	NaN	10.265	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111560	+		12267	32998	8509	8525							0.0010606131500026095
ELLVWTGGE	9	Unmodified	_ELLVWTGGE_					0	0	0			REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.258382	1002.50221	-0.38225	-0.00019199	0.38713	0.00019444	0.0048873	2.4547E-06	502.25875450437326	73.558	0.32974	73.286	73.129	73.459	-0.27126	-0.015486	-0.00023953	NaN	10.265	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130460	+		12268	32998	8509	8525							0.0010606131500026095
ELLVWTGGE	9	Unmodified	_ELLVWTGGE_					0	0	0			REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.258382	1002.50221	-0.17831	-8.9555E-05	-0.25317	-0.00012716	-0.43148	-0.00021671	502.25838441192985	73.277	0.29478	73.286	73.107	73.402	0.0096512	-0.015584	-0.00088272	NaN	10.265	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111660	+		12269	32998	8509	8525							0.0010606131500026095
ELLWFVPT	8	Unmodified	_ELLWFVPT_					0	0	0			REV__ENSG00000141569|ENST00000269383|TRIM65	REV__ENSG00000141569|ENST00000269383|TRIM65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2852478027344	2	502.776211	1003.53787	-1.0591	-0.00053249	0.93597	0.00047058	-0.12314	-6.1909E-05	502.77651549879744	44.064	0.21036	44.064	43.91	44.12	0					7	5	2	0	0	0	0.027866	1	4180	4180		33.516	1.5607	1	99292	+		12270	24107	8510	8526	13709	13709					0.0362414356266072
ELLWLARPQ	9	Unmodified	_ELLWLARPQ_					0	0	0			REV__ENST00000554470.5_1_14:35182751-35183904:-|nuORF	REV__ENST00000554470.5_1_14:35182751-35183904:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.32421875	2	563.324391	1124.63423	-1.1033	-0.00062149	0.58832	0.00033142	-0.51494	-0.00029008	563.3248286160422	61.88	0.28227	61.943	61.735	62.017	0.062767					13	7	2	0	0	0	0.024506	1	7103	7103		16.473	0	1	339950	+		12271	34990	8511	8527	13710	13710					0.07689711122611698
ELLYLIPD	8	Unmodified	_ELLYLIPD_					0	0	0			REV__ENSG00000147697|ENST00000276708|GSDMC	REV__ENSG00000147697|ENST00000276708|GSDMC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.7640686035156	2	488.273501	974.532449	-0.57855	-0.00028249	-2.0306	-0.0009915	-2.6092	-0.001274	488.27180111439674	43.432	0.38942	43.206	42.989	43.379	-0.22597					13	10	2	0	0	0	0.027866	1	3935	3935		12.207	4.5166	1	224920	+		12272	24579	8512	8528	13711	13711					0.04416419980191222
ELMDEVVTD	9	Unmodified	_ELMDEVVTD_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2901611328125	2	525.736622	1049.45869	-0.44857	-0.00023583	1.3532	0.00071145	0.90468	0.00047562	525.7370638023967	33.893	0.66552	33.889	33.486	34.152	-0.0045624					21	16	2	0	0	0	0.024405	1	2429	2429		44.117	17.424	1	70567	+		12273	26953	8513	8529	13712	13712					-0.06405916244443688
ELMDEVVTD	9	Unmodified	_ELMDEVVTD_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.736622	1049.45869	-1.0691	-0.00056204	2.519	0.0013243	1.45	0.00076231	525.7377099831571	33.981	1.02	33.981	33.388	34.408	0	0.042185	0.00054095	NaN	35.618	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49563	+		12274	26953	8513	8529							-0.06405916244443688
ELMDEVVTD	9	Unmodified	_ELMDEVVTD_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.736622	1049.45869	-0.19179	-0.00010083	1.5273	0.00080297	1.3355	0.00070214	525.737235023239	33.9	0.68273	33.957	33.577	34.26	0.056572	0.017516	-0.00050181	NaN	35.618	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74040	+		12275	26953	8513	8529							-0.06405916244443688
ELMDEYIDVL	10	Unmodified	_ELMDEYIDVL_					0	0	0			REV__ENSG00000168522|ENST00000302279|FNTA	REV__ENSG00000168522|ENST00000302279|FNTA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.87677001953125	3	413.865295	1238.57406	-0.45868	-0.00018983	-4.3308	-0.0017924	-4.7895	-0.0019822	413.8630681199185	29.95	0.36216	29.95	29.814	30.176	0					12	8	2	0	0	0	0.03519	1	1885	1885		29.17	0	1	27626	+		12276	26270	8514	8530	13713	13713					-0.03568812113462627
ELMELCVLL	9	Carbamidomethyl (C)	_ELMELC(Carbamidomethyl (C))VLL_	ELMELC(1)VLL		ELMELC(48)VLL		0	1	0		CCDC85A|p.K166M|1|0.34|ENSG00000055813|chr2:56192697-56192697|A/T|missense_variant	CCDC85A|p.K166M|1|0.34|ENSG00000055813|chr2:56192697-56192697|A/T|missense_variant	CCDC85A|p.K166M|1|0.34|ENSG00000055813|chr2:56192697-56192697|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.2969360351562	2	560.293053	1118.57155	0.394	0.00022075	3.3281	0.0018647	3.7221	0.0020855	560.2948574307109	72.785	0.81947	72.503	72.18	72.999	-0.28124					46	19	3	0	0	0	0.67308	1	8824	8824		47.916	7.1374	1	1882000			12277	226	8515	8531	13714	13714	4				0.01701060947902988
ELMERQVQNVK	11	Unmodified	_ELMERQVQNVK_					0	0	0			REV__ENST00000370571.6_1_1:86334469-86342833:-|nuORF	REV__ENST00000370571.6_1_1:86334469-86342833:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.26409912109375	3	458.578371	1372.71328	-0.077231	-3.5416E-05	0.067096	3.0769E-05	-0.010134	-4.6474E-06	458.5783576811077	42.165	0.46056	42.033	41.825	42.285	-0.13219					23	13	2	0	0	0	0.024747	1	3837	3837		33.039	0	1	376190	+		12278	31132	8516	8532	13715	13715					0.04183570294594574
ELMFPLLLLL	10	Unmodified	_ELMFPLLLLL_					0	0	0		ENST00000556692.1_1_14:68159543-68162507:-|nuORF;ENST00000553816.5_1_14:68151682-68162420:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11	ENST00000556692.1_1_14:68159543-68162507:-|nuORF	ENST00000556692.1_1_14:68159543-68162507:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.8662109375	3	401.247011	1200.7192	0.59699	0.00023954	2.7628	0.0011086	3.3597	0.0013481	401.247912657346	43.395	0.55116	43.158	42.8	43.351	-0.23737					25	14	3	0	0	0	0.03519	1	3969	3969		21.686	0	1	147950			12279	1464	8517	8533	13716	13716					0.12687320544227987
ELMITVQEL	9	Unmodified	_ELMITVQEL_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2886352539062	2	538.288825	1074.5631	-0.74613	-0.00040163	0.74312	0.00040001	-0.0030081	-1.6192E-06	538.2889582065523	89.577	0.82284	89.577	89.27	90.093	0					44	19	3	0	0	0	0.12602	1	11326	11326		104.75	3.1458	1	1648400			12280	4910	8518	8534	13717	13717					0.028798303029361705
ELMITVQEL	9	Unmodified	_ELMITVQEL_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.287353515625	2	538.288825	1074.5631	-0.16391	-8.8232E-05	0.066303	3.569E-05	-0.097609	-5.2542E-05	538.2886959262779	89.621	0.71303	89.6	89.241	89.954	-0.021645					31	16	2	0	0	0	0.043667	1	11268	11268		131.03	10.163	1	1310000			12281	4910	8518	8534	13718	13718					0.028798303029361705
ELMITVQEL	9	Unmodified	_ELMITVQEL_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.288330078125	2	538.288825	1074.5631	-1.0337	-0.00055644	1.3871	0.00074664	0.35335	0.0001902	538.2893144109066	89.61	0.84308	89.448	89.133	89.976	-0.1626					47	19	3	0	0	0	0.033448	1	10940	10940		138.83	23.331	1	1277300			12282	4910	8518	8534	13719	13719					0.028798303029361705
ELMITVQEL	9	Unmodified	_ELMITVQEL_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.28857421875	2	538.288825	1074.5631	-0.69214	-0.00037257	1.2643	0.00068058	0.5722	0.00030801	538.2891852315364	89.563	1.0461	89.435	89.159	90.205	-0.12774					61	24	5	0	0	0	0.15029	1	10967	10967		99.375	3.1845	1	1273700			12283	4910	8518	8534	13720	13720					0.028798303029361705
ELMITVQEL	9	Unmodified	_ELMITVQEL_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2887573242188	2	538.288825	1074.5631	-0.5528	-0.00029757	0.6476	0.0003486	0.094802	5.1031E-05	538.289016571707	89.635	0.8485	89.497	89.189	90.038	-0.13762					36	19	2	0	0	0	0.15366	2	10928	10928;10951		98.629	10.452	1	1287100			12284	4910	8518	8534	13721;13722	13721					0.028798303029361705
ELMKRIYTF	9	Oxidation (M)	_ELM(Oxidation (M))KRIYTF_		ELM(1)KRIYTF		ELM(67)KRIYTF	0	0	1		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.8231201171875	2	608.823366	1215.63218	-0.89071	-0.00054228	0.68304	0.00041585	-0.20767	-0.00012643	608.8236382667914	46.108	0.76687	46.011	45.706	46.473	-0.096649					60	20	4	0	0	0	0.37611	1	4436	4436		67.494	21.521	1	2098400			12285	1818;17643	8519	8535	13723	13723		65			0.03298914322476776
ELMKRIYTF	9	Oxidation (M)	_ELM(Oxidation (M))KRIYTF_		ELM(1)KRIYTF		ELM(66)KRIYTF	0	0	1		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.8237915039062	2	608.823366	1215.63218	-0.52134	-0.00031741	0.61277	0.00037307	0.091424	5.5661E-05	608.8235418334475	46.344	0.82557	46.082	45.777	46.603	-0.26118					66	21	4	0	0	0	0.39228	1	4465	4465		66.429	13.078	1	1431600			12286	1818;17643	8519	8535	13724	13724		65			0.03298914322476776
ELMKRIYTF	9	Oxidation (M)	_ELM(Oxidation (M))KRIYTF_		ELM(1)KRIYTF		ELM(82)KRIYTF	0	0	1		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.8224487304688	2	608.823366	1215.63218	-0.98527	-0.00059985	0.66271	0.00040348	-0.32255	-0.00019638	608.8236279124034	46.224	0.73405	46.021	45.706	46.441	-0.20226					60	19	4	0	0	0	0.2508	1	4434	4434		82.241	34.583	1	1952700			12287	1818;17643	8519	8535	13725	13725		65			0.03298914322476776
ELMKRIYTF	9	Unmodified	_ELMKRIYTF_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	600.8239135742188	2	600.825909	1199.63727	-0.83452	-0.0005014	0.77081	0.00046312	-0.063705	-3.8276E-05	600.8262279400684	54.893	1.4438	54.747	54.245	55.688	-0.14609					89	39	4	0	0	0	0.016249	3	5849	5849;5861;5874		127.46	70.741	1	7185900			12288	1818;17643	8519	8536	13726;13727;13728	13726					0.04543218185108344
ELMKRIYTF	9	Unmodified	_ELMKRIYTF_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	600.8255004882812	2	600.825909	1199.63727	-0.5706	-0.00034283	0.4623	0.00027776	-0.1083	-6.5067E-05	600.8260817080411	55	1.5809	54.769	54.213	55.794	-0.23087					93	44	4	0	0	0	0.014478	3	5860	5860;5871;5883		139.97	92.151	1	8609500			12289	1818;17643	8519	8536	13729;13730;13731	13729					0.04543218185108344
ELMKRIYTF	9	Unmodified	_ELMKRIYTF_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	600.82421875	2	600.825909	1199.63727	0.32194	0.00019343	-0.40681	-0.00024442	-0.084871	-5.0993E-05	600.8256041517863	54.982	1.3568	54.776	54.468	55.825	-0.20613					89	37	4	0	0	0	0.013442	3	5866	5845;5854;5866		180.93	95.765	1	7812300			12290	1818;17643	8519	8536	13732;13733;13734	13734					0.04543218185108344
ELMKTWSY	8	Unmodified	_ELMKTWSY_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2535400390625	2	529.254785	1056.49502	-0.20595	-0.000109	-3.9072	-0.0020679	-4.1132	-0.0021769	529.2525896191336	38.664	2.8603	38.439	37.417	40.277	-0.2257					149	77	3	0	0	0	0.5947	2	3187	3175;3187		76.774	14.667	1	1617900	+		12291	23428	8520	8537	13735;13736	13736					-0.030969945570632262
ELMLCLIEV	9	Carbamidomethyl (C)	_ELMLC(Carbamidomethyl (C))LIEV_	ELMLC(1)LIEV		ELMLC(61)LIEV		0	1	0			REV__nc|ENSG00000153815|Q8IY22-3|CMIP	REV__nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2982788085938	2	560.293053	1118.57155	0.13034	7.3029E-05	4.1788	0.0023413	4.3091	0.0024144	560.2950573449083	72.462	0.69682	72.462	72.17	72.867	0					55	16	5	0	0	0	0.4752	1	8828	8828		60.972	9.4442	1	1914200	+		12292	24911	8521	8538	13737	13737	328				0.01701060947902988
ELMLRFKDEYK	11	Unmodified	_ELMLRFKDEYK_					0	0	0		ENSG00000179071|ENST00000316398|CCDC89	ENSG00000179071|ENST00000316398|CCDC89	ENSG00000179071|ENST00000316398|CCDC89	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.7455139160156	3	491.258638	1470.75409	-0.56857	-0.00027931	2.931	0.0014399	2.3624	0.0011606	491.26001714495516	42.772	0.64476	42.66	42.317	42.962	-0.11253					37	16	3	0	0	0	0.024821	1	3858	3858		19.263	5.7547	1	590720			12293	8868	8522	8539	13738	13738					0.03753911614194294
ELMPRPLL	8	Unmodified	_ELMPRPLL_					0	0	0		TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant;ENSG00000198113|ENST00000357503|TOR4A	TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2662048339844	2	484.783513	967.552473	0.31127	0.0001509	-2.9404	-0.0014255	-2.6291	-0.0012746	484.78180094167345	67.019	1.2604	66.771	66.65	67.91	-0.24839					44	31	2	0	0	0	0.027866	1	7857	7857		30.504	3.7075	1	920340			12294	10097	8523	8540	13739	13739					0.06739892439168216
ELMTHGAKSP	10	Unmodified	_ELMTHGAKSP_					0	0	0		ENSG00000165966|ENST00000402685|PDZRN4;ENST00000548316.1_1_12:41903559-41967689:+|nuORF;nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;nc|ENSG00000165966|Q6ZMN7-2|PDZRN4	ENSG00000165966|ENST00000402685|PDZRN4	ENSG00000165966|ENST00000402685|PDZRN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7496948242188	2	535.768591	1069.52263	-0.21834	-0.00011698	-0.79314	-0.00042494	-1.0115	-0.00054192	535.7679903702235	32.204	1.0629	31.968	31.153	32.216	-0.23666					33	25	2	0	0	0	0.03519	1	2185	2185		18.262	0.89712	1	90251			12295	7490	8524	8541	13740	13740					-0.009350912968329794
ELMTPSLNI	9	Unmodified	_ELMTPSLNI_					0	0	0			REV__nc|ENSG00000141384|Q92750-2|TAF4B	REV__nc|ENSG00000141384|Q92750-2|TAF4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2553405761719	2	509.267893	1016.52123	-0.47378	-0.00024128	3.6272	0.0018472	3.1534	0.0016059	509.7693395276772	91.772	1.2252	91.648	91.035	92.26	-0.12341					48	28	2	0	0	0	0.024405	1	11267	11267		14.865	0	1	63363	+		12296	24077	8525	8542	13741	13741					0.013632746144139674
ELMVTQSKP	9	Unmodified	_ELMVTQSKP_					0	0	0			REV__ENST00000450418.1_1_3:4024502-4025426:-|nuORF	REV__ENST00000450418.1_1_3:4024502-4025426:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	516.7757568359375	2	516.773342	1031.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.935	1	24.935	24.435	25.435	0								0	0	0	0.24781	1	1131	1131		71.877	3.0906	1		+		12297	32701	8526	8543	13742	13742					0.017626769887101545
ELMWLAPL	8	Unmodified	_ELMWLAPL_					0	0	0			REV__nc|ENSG00000125814|Q9H115-3|NAPB	REV__nc|ENSG00000125814|Q9H115-3|NAPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2816467285156	2	486.764789	971.515025	-0.30129	-0.00014666	3.3516	0.0016314	3.0503	0.0014848	486.766607976726	85.724	0.58073	85.667	85.439	86.02	-0.05761					14	13	2	0	0	0	0.027866	1	10758	10758		39.021	0	1	75841	+		12298	36639	8527	8544	13743	13743					0.028128011735248037
ELNDLDMQL	9	Oxidation (M)	_ELNDLDM(Oxidation (M))QL_		ELNDLDM(1)QL		ELNDLDM(59)QL	0	0	1		ENSG00000136720|ENST00000259241|HS6ST1;nc|ENSG00000136720|O60243-2|HS6ST1	ENSG00000136720|ENST00000259241|HS6ST1	ENSG00000136720|ENST00000259241|HS6ST1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7561645507812	2	553.755346	1105.49614	0.25003	0.00013846	0.61111	0.0003384	0.86114	0.00047686	553.7556567087485	22.403	1.2914	22.214	21.959	23.25	-0.18894					73	27	4	0	0	0	0.50848	1	798	798		58.782	12.83	1	1568600			12299	5039	8528	8545	13744	13744		208			-0.052388249788464236
ELNEANKKWE	10	Unmodified	_ELNEANKKWE_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7276306152344	3	420.878815	1259.61462	-0.63246	-0.00026619	-1.9761	-0.00083171	-2.6086	-0.0010979	420.87778954656306	25.118	0.69475	25.118	24.874	25.569	0					21	16	2	0	0	0	0.03519	1	1170	1170		26.063	15.959	1	54896	+		12300	21154	8529	8546	13745	13745					-0.004807096788226772
ELNELFIKLLK	11	Unmodified	_ELNELFIKLLK_					0	0	0			REV__ENSG00000103047|ENST00000261778|TANGO6	REV__ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.94586181640625	3	453.946389	1358.81734	1.7197	0.00078063	-3.7475	-0.0017011	-2.0278	-0.00092051	453.94461759386115	16.935	0.44854	16.781	16.609	17.058	-0.15376					11	8	2	0	0	0	1.0621	1	128	128		21.78	0	1	35667	+		12301	21350	8530	8547	13746	13746					0.15228220393737502
ELNELRKAL	9	Unmodified	_ELNELRKAL_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2446899414062	2	543.319306	1084.62406	-1.1672	-0.00063418	0.59605	0.00032385	-0.57118	-0.00031033	543.3194449080127	65.1	0.83871	64.845	64.346	65.184	-0.25563					46	20	5	0	0	0	0.024457	1	7361	7361		37.159	0	1	827990			12302	10013	8531	8548	13747	13747					0.08513103397376653
ELNELRKAL	9	Unmodified	_ELNELRKAL_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.319306	1084.62406	-0.79959	-0.00043443	0.93589	0.00050849	0.1363	7.4055E-05	543.3196246978871	65.128	0.81403	64.893	64.607	65.421	-0.2345	0.02001	0.00013494	NaN	37.159	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685060			12303	10013	8531	8548							0.08513103397376653
ELNELRKAL	9	Unmodified	_ELNELRKAL_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.319306	1084.62406	-1.2881	-0.00069985	0.87572	0.0004758	-0.41238	-0.00022406	543.3195364186765	65.084	0.56845	64.882	64.577	65.146	-0.20254	0.0085426	6.9559E-05	NaN	37.159	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	911460			12304	10013	8531	8548							0.08513103397376653
ELNERQRA	8	Unmodified	_ELNERQRA_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80291748046875	2	508.267604	1014.52066	0.31174	0.00015845	1.4913	0.00075796	1.803	0.00091641	508.26909180030424	37.125	0.42404	36.932	36.578	37.002	-0.193					13	10	2	0	0	0	0.027866	1	2938	2938		38.806	12.113	1	57666			12305	10174	8532	8549	13748	13748					0.013976160095694468
ELNERVAAL	9	Unmodified	_ELNERVAAL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7816467285156	2	507.782556	1013.55056	-0.74188	-0.00037671	0.37993	0.00019292	-0.36195	-0.00018379	507.78254982705164	48.474	1.1878	48.377	48.002	49.19	-0.097553					52	31	3	0	0	0	0.021872	3	4802	4802;4813;4826		148.04	43.296	1	3998900			12306	3658	8533	8550	13749;13750;13751	13749					0.04432554954905754
ELNERVAAL	9	Unmodified	_ELNERVAAL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7822265625	2	507.782556	1013.55056	-1.042	-0.00052912	0.51276	0.00026037	-0.52926	-0.00026875	507.7826679596146	48.762	1.2516	48.482	48.183	49.434	-0.27977					51	33	3	0	0	0	0.021872	3	4836	4836;4847;4860		148.04	35.436	1	4193700			12307	3658	8533	8550	13752;13753;13754	13752					0.04432554954905754
ELNERVAAL	9	Unmodified	_ELNERVAAL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7830505371094	2	507.782556	1013.55056	-0.30985	-0.00015734	-0.022762	-1.1558E-05	-0.33262	-0.0001689	507.7822896681955	48.598	0.8692	48.416	48.091	48.96	-0.18206					46	23	3	0	0	0	0.03849	2	4819	4819;4829		134.81	41.615	1	4047800			12308	3658	8533	8550	13755;13756	13755					0.04432554954905754
ELNGHHTL	8	Unmodified	_ELNGHHTL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.7326965332031	2	460.732866	919.451179	-0.2129	-9.8089E-05	0.14581	6.7177E-05	-0.067093	-3.0912E-05	460.73269392774097	24.657	0.72544	24.442	24.218	24.943	-0.2151					38	16	4	0	0	0	0.24207	2	1099	1099;1112		133.47	32.257	1	981560			12309	7355	8534	8551	13757;13758	13757					-0.011768429391850077
ELNGHHTL	8	Unmodified	_ELNGHHTL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.7330627441406	2	460.732866	919.451179	-0.21733	-0.00010013	0.36775	0.00016944	0.15042	6.9304E-05	460.7328431071435	24.482	0.59409	24.307	24.048	24.643	-0.17484					28	13	3	0	0	0	0.2822	1	1069	1069		119.56	9.2196	1	923860			12310	7355	8534	8551	13759	13759					-0.011768429391850077
ELNGHHTL	8	Unmodified	_ELNGHHTL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.7328796386719	2	460.732866	919.451179	2.1532	0.00099205	-2.2319	-0.0010283	-0.078702	-3.6261E-05	460.7316090377661	24.53	0.69572	24.349	24.072	24.767	-0.18089					37	15	4	0	0	0	0.30538	1	1055	1055		110.34	21.694	1	864950			12311	7355	8534	8551	13760	13760					-0.011768429391850077
ELNIVSLIP	9	Unmodified	_ELNIVSLIP_					0	0	0			REV__ENST00000475777.2_1_12:110882884-110883061:-|nuORF	REV__ENST00000475777.2_1_12:110882884-110883061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.2532958984375	2	499.30005	996.585547	0.23027	0.00011498	-0.24092	-0.00012029	-0.010646	-5.3157E-06	499.29978507192277	95.432	0.81403	95.436	95.045	95.859	0.0033722					26	18	2	0	0	0	0.024447	1	12156	12156		19.104	0	1	134220	+		12312	33301	8535	8552	13761	13761					0.08711797762850892
ELNKGHLEEC	10	Unmodified	_ELNKGHLEEC_					0	0	0			REV__FGFR3-TACC3|6|fusion	REV__FGFR3-TACC3|6|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.8406982421875	2	586.274238	1170.53392	-0.63898	-0.00037462	1.2335	0.00072316	0.59452	0.00034855	586.2748915165823	53.282	0.63643	53.092	52.793	53.429	-0.18982					47	16	4	0	0	0	0.03519	1	5533	5533		32.812	0	1	1783500	+		12313	36040	8536	8553	13762	13762					-0.044523139933517086
ELNKQEKQ	8	Unmodified	_ELNKQEKQ_					0	0	0			REV__nc|ENSG00000162702|Q9Y2X9-2|ZNF281	REV__nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.8088684082031	2	508.772188	1015.52982	0.99379	0.00050561	0.37392	0.00019024	1.3677	0.00069585	508.77204216629383	18.067	0.34392	17.911	17.755	18.099	-0.15637					10	6	2	0	0	0	0.027866	1	264	264		58.782	0	1	26295	+		12314	25477	8537	8554	13763	13763					0.022679645752418764
ELNLATNLP	9	Unmodified	_ELNLATNLP_					0	0	0			REV__ENSG00000049323|ENST00000404816|LTBP1	REV__ENSG00000049323|ENST00000404816|LTBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30084228515625	2	492.771657	983.528761	-0.10076	-4.9653E-05	-0.036565	-1.8018E-05	-0.13733	-6.7671E-05	492.77149636380716	56.795	0.92354	56.795	56.46	57.384	0					47	25	3	0	0	0	0.021816	1	6304	6304		85.161	10.118	1	4503500	+		12315	20145	8538	8555	13764	13764					0.036337502063247484
ELNPKHKL	8	Unmodified	_ELNPKHKL_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.79052734375	2	489.790184	977.565815	-0.030587	-1.4981E-05	0.20838	0.00010206	0.17779	8.708E-05	489.7901537153431	22.4	0.74246	22.211	21.863	22.606	-0.18894					35	15	3	0	0	0	0.94517	1	804	804		45.952	7.1458	1	683540			12316	5325	8539	8556	13765	13765					0.07613466542750302
ELNPKHKL	8	Unmodified	_ELNPKHKL_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.7908630371094	2	489.790184	977.565815	-0.49132	-0.00024064	0.58623	0.00028713	0.09491	4.6486E-05	489.79032347851313	22.52	0.69235	22.334	22	22.692	-0.18539					36	14	4	0	0	0	0.81662	1	803	803		57.811	4.4598	1	578390			12317	5325	8539	8556	13766	13766					0.07613466542750302
ELNPKHKL	8	Unmodified	_ELNPKHKL_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.790771484375	2	489.790184	977.565815	0.61234	0.00029992	-0.5566	-0.00027262	0.055745	2.7303E-05	489.7897267339311	22.54	0.79618	22.338	21.951	22.747	-0.20198					38	16	4	0	0	0	0.53523	3	779	768;779;792		82.305	11.009	1	564350			12318	5325	8539	8556	13767;13768;13769	13768					0.07613466542750302
ELNPKILAL	9	Unmodified	_ELNPKILAL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.8158264160156	2	505.815867	1009.61718	0.15025	7.5997E-05	-0.80276	-0.00040605	-0.65251	-0.00033005	505.8154476015568	68.303	1.3905	68.048	67.7	69.091	-0.25516					98	33	5	0	0	0	0.012965	4	7880	7870;7880;7893;7906		187.63	61.819	1	13819000			12319	2235	8540	8557	13770;13771;13772;13773	13771					0.11275790516799589
ELNPKILAL	9	Unmodified	_ELNPKILAL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.8158874511719	2	505.815867	1009.61718	0.29132	0.00014735	-0.86868	-0.00043939	-0.57736	-0.00029204	505.81541164395077	68.255	1.3322	68.021	67.676	69.008	-0.23376					87	32	4	0	0	0	0.01471	5	7881	7872;7881;7894;7907;7920		187.63	61.819	1	12653000			12320	2235	8540	8557	13774;13775;13776;13777;13778	13775					0.11275790516799589
ELNPKILAL	9	Unmodified	_ELNPKILAL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.81597900390625	2	505.815867	1009.61718	0.19479	9.8527E-05	-0.90787	-0.00045922	-0.71308	-0.00036069	505.81539467194983	68.21	1.2491	67.979	67.637	68.886	-0.23048					90	30	5	0	0	0	0.012965	5	7854	7854;7864;7876;7890;7903		172.03	63.944	1	12273000			12321	2235	8540	8557	13779;13780;13781;13782;13783	13779					0.11275790516799589
ELNQKSATL	9	Unmodified	_ELNQKSATL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2747497558594	2	502.274564	1002.53457	-0.40138	-0.0002016	0.21835	0.00010967	-0.18303	-9.1932E-05	502.2745650140687	34.833	0.75738	34.626	34.326	35.083	-0.20696					44	18	3	0	0	0	0.053401	1	2586	2586		127.46	24.688	1	1754600			12322	8075	8541	8558	13784	13784					0.03340848718016787
ELNQKSATL	9	Unmodified	_ELNQKSATL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2742614746094	2	502.274564	1002.53457	-0.74908	-0.00037624	0.59884	0.00030078	-0.15024	-7.5462E-05	502.274795242722	34.755	0.94642	34.568	34.039	34.985	-0.18675					51	23	4	0	0	0	0.067814	1	2566	2566		122.18	34.48	1	1896300			12323	8075	8541	8558	13785	13785					0.03340848718016787
ELNQKSATL	9	Unmodified	_ELNQKSATL_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	502.274564	1002.53457	0.01168	5.8665E-06	-0.043383	-2.179E-05	-0.031703	-1.5924E-05	502.27442072047097	34.853	0.68011	34.637	34.307	34.987	-0.21555	0.026862	-0.0002679	NaN	127.46	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1909300			12324	8075	8541	8558							0.03340848718016787
ELNRKTILS	9	Unmodified	_ELNRKTILS_					0	0	0			REV__ENST00000357727.6_1_7:28452175-28452307:+|nuORF	REV__ENST00000357727.6_1_7:28452175-28452307:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2783813476562	2	537.319306	1072.62406	0.35534	0.00019093	2.773	0.00149	3.1284	0.0016809	537.3204728876686	85.006	1.2019	85.006	84.587	85.789	0					43	28	2	0	0	0	0.023061	1	10654	10654		69.628	0	1	174430	+		12325	30839	8542	8559	13786	13786					0.09065103397392704
ELNSHHNKK	9	Unmodified	_ELNSHHNKK_					0	0	0		ENSG00000162398|ENST00000371273|LEXM;nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	ENSG00000162398|ENST00000371273|LEXM	ENSG00000162398|ENST00000371273|LEXM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7864990234375	2	553.788704	1105.56285	-0.018893	-1.0463E-05	-3.9195	-0.0021706	-3.9383	-0.002181	553.7864617835799	55.903	1.1313	55.687	55.336	56.468	-0.21607					79	29	4	0	0	0	0.50848	1	6067	6067		58.782	8.7574	1	13590000			12326	6937	8543	8560	13787	13787					0.014295914179456304
ELNSIGVIL	9	Unmodified	_ELNSIGVIL_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;ENST00000526574.1_1_11:68334490-68338573:+|nuORF	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.78167724609375	2	479.2844	956.554247	-0.21171	-0.00010147	0.56749	0.00027199	0.35579	0.00017052	479.2844491071957	57.308	0.4336	57.14	56.896	57.33	-0.1672					17	11	2	0	0	0	0.024427	1	6281	6281		34.173	18.531	1	187360			12327	3020	8544	8561	13788	13788					0.07423224728779587
ELNSKVRFAKD	11	Unmodified	_ELNSKVRFAKD_					0	0	0			REV__ENSG00000160336|ENST00000684525|ZNF761	REV__ENSG00000160336|ENST00000684525|ZNF761	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7922058105469	3	436.241976	1305.7041	-0.15151	-6.6096E-05	2.3075	0.0010066	2.1559	0.00094051	436.2429896918345	33.302	0.39188	33.102	32.855	33.247	-0.20019					14	9	2	0	0	0	0.024747	1	2335	2335		39.873	11.296	1	141180	+		12328	25314	8545	8562	13789	13789					0.06347545000562604
ELNSLLQDL	9	Unmodified	_ELNSLLQDL_					0	0	0			REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B	REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7717895507812	2	522.782222	1043.54989	0.22239	0.00011626	2.0561	0.0010749	2.2785	0.0011912	522.7831806515595	72.713	0.16808	72.449	72.343	72.511	-0.26479					5	3	2	0	0	0	0.024495	1	8543	8543		34.173	12.487	1	52687	+		12329	25287	8546	8563	13790	13790					0.029857155152058112
ELNSRNRYLTE	11	Unmodified	_ELNSRNRYLTE_					0	0	0			REV__ENSG00000156194|ENST00000286719|PPEF2	REV__ENSG00000156194|ENST00000286719|PPEF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2615051269531	3	465.572274	1393.69499	-0.41696	-0.00019413	0.26936	0.00012541	-0.1476	-6.8719E-05	465.5722785410954	22.195	0.48124	22.269	22.078	22.559	0.073954					25	9	3	0	0	0	0.02477	1	744	744		8.4073	0	1	43036	+		12330	25058	8547	8564	13791	13791					0.01389151644229969
ELNVQEFSV	9	Unmodified	_ELNVQEFSV_					0	0	0			REV__ENST00000550898.1_1_12:75900510-75905383:-|nuORF	REV__ENST00000550898.1_1_12:75900510-75905383:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.3002319335938	2	532.766571	1063.51859	-0.3554	-0.00018935	4.2383	0.002258	3.8829	0.0020687	532.7681509697837	61.465	0.57541	61.465	61.144	61.72	0					24	14	2	0	0	0	0.024511	1	7075	7075		25.574	8.2091	1	164830	+		12331	34918	8548	8565	13792	13792					-0.010628575189002731
ELNWSLLP	8	Unmodified	_ELNWSLLP_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2548522949219	2	486.263468	970.512382	-0.14599	-7.0991E-05	3.4642	0.0016845	3.3182	0.0016135	486.2651002318108	65.425	1.646	65.425	64.538	66.184	0					86	44	2	0	0	0	0.027866	1	7622	7622		60.294	24.676	1	499170			12332	2391	8549	8566	13793	13793					0.025946690402406603
ELPAACEEAR	10	Unmodified	_ELPAACEEAR_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3165283203125	2	544.755681	1087.49681	0.18434	0.00010042	-3.8212	-0.0020816	-3.6369	-0.0019812	544.7550513199553	85.963	0.33916	85.963	85.789	86.128	0					10	7	2	0	0	0	0.03519	1	10811	10811		25.574	7.312	1	27707			12333	1916	8550	8567	13794	13794					-0.04343985539139794
ELPADISKP	9	Unmodified	_ELPADISKP_					0	0	0		ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.77984619140625	2	485.266207	968.517862	-0.1918	-9.3072E-05	2.56	0.0012423	2.3682	0.0011492	485.2675176064116	72.945	0.7706	72.955	72.411	73.181	0.0096512					26	18	2	0	0	0	0.024484	1	8739	8739		37.812	5.8567	1	148030			12334	6064	8551	8568	13795	13795					0.0323434783203993
ELPADISKP	9	Unmodified	_ELPADISKP_					0	0	0		ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.266207	968.517862	-0.023344	-1.1328E-05	0.51127	0.0002481	0.48792	0.00023677	485.2663557828332	73.301	0.48049	73.03	72.76	73.241	-0.27126	0.089096	-0.00010611	NaN	23.523	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179700			12335	6064	8551	8568							0.0323434783203993
ELPADISKP	9	Unmodified	_ELPADISKP_					0	0	0		ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.266207	968.517862	-0.20346	-9.873E-05	-0.29366	-0.00014251	-0.49712	-0.00024124	485.2656025165594	73.115	0.25351	72.839	72.756	73.01	-0.2769	-0.1026	-0.00088732	NaN	23.523	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95976			12336	6064	8551	8568							0.0323434783203993
ELPALGLW	8	Unmodified	_ELPALGLW_					0	0	0		ENST00000484408.5_1_2:47403520-47403589:-|nuORF	ENST00000484408.5_1_2:47403520-47403589:-|nuORF	ENST00000484408.5_1_2:47403520-47403589:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2686767578125	2	449.755278	897.496004	-1.3367	-0.00060118	-3.2818	-0.001476	-4.6185	-0.0020772	449.7535578822268	49.186	0.6711	49.26	49.06	49.731	0.074196					23	17	2	0	0	0	0.027866	1	4972	4972		29.842	0	1	217310			12337	15300	8552	8569	13796	13796					0.04315587874123139
ELPAWVKE	8	Unmodified	_ELPAWVKE_					0	0	0		ENSG00000187867|ENST00000669674|PALM3;nc|ENSG00000187867|A6NDB9|PALM3	ENSG00000187867|ENST00000669674|PALM3	ENSG00000187867|ENST00000669674|PALM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2918701171875	2	486.263468	970.512382	-0.44384	-0.00021582	-1.8102	-0.00088026	-2.2541	-0.0010961	486.2628872782093	81.9	0.47038	81.757	81.483	81.954	-0.14249					19	10	3	0	0	0	0.027866	1	9822	9822		24.203	10.427	1	102290			12338	9671	8553	8570	13797	13797					0.025946690402406603
ELPEEFPQF	9	Unmodified	_ELPEEFPQF_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.75048828125	2	568.268947	1134.52334	1.0202	0.00057974	2.2187	0.0012608	3.2389	0.0018406	568.2701581186612	51.195	0.65692	51.014	50.87	51.527	-0.18071					24	16	2	0	0	0	0.024344	1	5239	5239		37.812	12.237	1	137350			12339	8041	8554	8571	13798	13798					-0.038539733761354
ELPEFLLFL	9	Unmodified	_ELPEFLLFL_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG;TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.2875366210938	2	560.818076	1119.6216	-0.57843	-0.0003244	-1.0645	-0.00059696	-1.6429	-0.00092136	560.8176383718554	51.491	0.53938	51.215	50.853	51.393	-0.27643					28	13	3	0	0	0	0.024412	1	5243	5243		31.955	0	1	708080			12340	1083	8555	8572	13799	13799					0.06657254939727864
ELPEGWGQRTK	11	Unmodified	_ELPEGWGQRTK_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.780029296875	3	434.226326	1299.65715	-0.91694	-0.00039816	1.3059	0.00056706	0.38897	0.0001689	434.22612915054776	35.631	0.46442	35.609	35.386	35.851	-0.021763					13	11	2	0	0	0	0.024765	1	2775	2775		11.455	0	1	50723	+		12341	24500	8556	8573	13800	13800					0.019306854494288928
ELPELRRRLRM	11	Unmodified	_ELPELRRRLRM_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2713623046875	3	490.289155	1467.84564	0.22084	0.00010828	-3.8772	-0.0019009	-3.6563	-0.0017927	490.2870851683274	41.223	0.67031	41.223	40.871	41.542	0					41	18	4	0	0	0	0.024856	1	3724	3724		9.2118	0	1	351870			12342	1222	8557	8574	13801	13801					0.1304263982201519
ELPEMGINEL	10	Unmodified	_ELPEMGINEL_					0	0	0			REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.3604125976562	2	572.781364	1143.54818	0.090913	5.2073E-05	-4.1757	-0.0023917	-4.0847	-0.0023397	572.778902841306	52.773	0.65328	52.626	52.406	53.06	-0.14723					22	16	2	0	0	0	0.03519	1	5621	5621		39.253	0	1	247410	+		12343	36897	8558	8575	13802	13802					-0.017856615650543972
ELPGLTLI	8	Unmodified	_ELPGLTLI_					0	0	0		ENST00000580840.1_2_17:29227507-29227552:-|nuORF	ENST00000580840.1_2_17:29227507-29227552:-|nuORF	ENST00000580840.1_2_17:29227507-29227552:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2621765136719	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0239	1	11025	11025		33.516	3.674	1	68116000			12344	17154	8559	8576	13803	13803					0.0782445467133357
ELPGREDPL	9	Unmodified	_ELPGREDPL_					0	0	0			REV__ENSG00000115457|ENST00000233809|IGFBP2;REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	REV__ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7842407226562	2	513.266739	1024.51892	-0.42814	-0.00021975	2.3546	0.0012086	1.9265	0.00098881	513.7669693675899	73.079	0.23079	73.089	72.986	73.217	0.0096512					7	5	2	0	0	0	0.024374	1	8831	8831		25.574	0	1	34010	+		12345	22205;32467	8560	8577	13804	13804					0.007645622009476938
ELPGSSHLSL	10	Unmodified	_ELPGSSHLSL_					0	0	0		ENST00000369288.6_1_1:145706772-145715535:-|nuORF	ENST00000369288.6_1_1:145706772-145715535:-|nuORF	ENST00000369288.6_1_1:145706772-145715535:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2589111328125	2	520.274564	1038.53457	-0.86667	-0.0004509	2.871	0.0014937	2.0043	0.0010428	520.2760054624215	85.183	1.1993	85.209	84.747	85.946	0.025536					40	28	3	0	0	0	0.03519	1	10589	10589		42.396	0	1	326130			12346	12918	8561	8578	13805	13805					0.016848487180141092
ELPIFKSEF	9	Unmodified	_ELPIFKSEF_					0	0	0		ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2;SETD2-CCDC12|3|fusion;nc|ENSG00000181555|Q9BYW2-2|SETD2;SETD2-CCDC12|2|fusion;SETD2-CCDC12|4|fusion	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2769775390625	2	555.297507	1108.58046	-0.35627	-0.00019783	-4.2547	-0.0023626	-4.6109	-0.0025604	555.2950497030836	41.681	0.31131	41.453	41.275	41.587	-0.2278					9	7	2	0	0	0	0.024495	1	3681	3681		34.173	5.023	1	110760			12347	9049	8562	8579	13806	13806					0.03051493900238711
ELPIGVLVQ	9	Unmodified	_ELPIGVLVQ_					0	0	0			REV__ENST00000506443.5_1_4:83956377-83978089:+|nuORF	REV__ENST00000506443.5_1_4:83956377-83978089:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2716369628906	2	484.294768	966.574983	-0.0061477	-2.9773E-06	-0.20418	-9.8881E-05	-0.21032	-0.00010186	484.29450681714997	63.595	0.57491	63.343	63.12	63.695	-0.25141					23	15	2	0	0	0	0.024457	1	7464	7464		29.15	8.2026	1	155930	+		12348	23879	8563	8580	13807	13807					0.09035815108427414
ELPITKRSL	9	Unmodified	_ELPITKRSL_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8193359375	2	528.824224	1055.63389	0.62657	0.00033135	0.78184	0.00041345	1.4084	0.0007448	528.8244656411064	71.144	0.88116	70.855	70.545	71.426	-0.28955					44	21	3	0	0	0	0.024427	1	8537	8537		34.173	0	1	679530	+		12349	23370	8564	8581	13808	13808					0.10830291402771763
ELPITVSVDV	10	Unmodified	_ELPITVSVDV_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.8294677734375	2	536.300247	1070.58594	-0.36532	-0.00019592	2.7765	0.001489	2.4111	0.0012931	536.3028588355995	49.846	0.37717	49.567	49.28	49.657	-0.27977					12	9	2	0	0	0	0.03519	1	5017	5017		19.997	0	1	172430			12350	6622	8565	8582	13809	13809					0.05347172692040658
ELPKKPVG	8	Unmodified	_ELPKKPVG_					0	0	0		nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.25152587890625	2	434.268553	866.522553	0.35686	0.00015497	3.0328	0.001317	3.3896	0.001472	434.27028917593765	79.558	0.2495	79.339	79.202	79.452	-0.21922					7	5	2	0	0	0	0.027866	1	9538	9538		25.45	6.0902	1	65528			12351	3879	8566	8583	13810	13810					0.08395276765475046
ELPKKVMKGV	10	Unmodified	_ELPKKVMKGV_					0	0	0		ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7218017578125	2	564.844102	1127.67365	0.21866	0.00012351	-3.1454	-0.0017767	-2.9267	-0.0016531	564.8421539372574	49.619	0.334	49.438	49.383	49.717	-0.18071					12	8	2	0	0	0	0.03519	1	5022	5022		32.812	9.7699	1	171620			12352	5620	8567	8584	13811	13811					0.11492095081825937
ELPKPRHVF	9	Unmodified	_ELPKPRHVF_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;nc|ENSG00000148814|Q9C0I9-4|LRRC27;nc|ENSG00000148814|Q9C0I9-3|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7899780273438	2	561.824558	1121.63456	-0.097273	-5.465E-05	-1.4539	-0.00081684	-1.5512	-0.00087149	561.8236052004974	49.348	0.68478	49.069	48.825	49.51	-0.27977					39	17	3	0	0	0	0.024541	1	4906	4906		10.866	3.6722	1	1077300			12353	6050	8568	8585	13812	13812					0.07861130842479724
ELPLEDGG	8	Unmodified	_ELPLEDGG_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.240478515625	2	415.200533	828.386513	-0.17097	-7.0988E-05	-3.2801	-0.0013619	-3.451	-0.0014329	415.19877321375753	30.295	0.41512	30.304	30.123	30.538	0.0086689					16	9	3	0	0	0	0.027866	1	1923	1923		12.959	4.7279	1	46516			12354	2166	8569	8586	13813	13813					-0.0345446253584214
ELPLKRKRDRF	11	Unmodified	_ELPLKRKRDRF_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.62774658203125	3	486.628165	1456.86267	-0.32832	-0.00015977	-1.9722	-0.00095973	-2.3005	-0.0011195	486.62711374622864	105.25	0.39893	105.25	104.98	105.38	-0.0015945					21	12	2	0	0	0	1.1045	1	13423	13423		10.104	0	1	294480	+		12355	20797	8570	8587	13814	13814					0.15250883699468432
ELPLLIQP	8	Unmodified	_ELPLLIQP_					0	0	0			REV__ENSG00000176769|ENST00000368642|TCERG1L	REV__ENSG00000176769|ENST00000368642|TCERG1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.25018310546875	2	461.784036	921.553519	-0.877	-0.00040498	-3.5215	-0.0016262	-4.3985	-0.0020312	461.7822546171022	38.092	0.51323	38.12	37.884	38.397	0.027275					22	14	2	0	0	0	0.027866	1	3104	3104		24.203	7.7296	1	189850	+		12356	27044	8571	8588	13815	13815					0.08960430079707749
ELPLLNLGVPV	11	Unmodified	_ELPLLNLGVPV_					0	0	0			REV__ENST00000449259.1_1_2:65131264-65131681:-|nuORF	REV__ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.352294921875	2	582.355357	1162.69616	-1.4953	-0.00087077	-1.7914	-0.0010432	-3.2866	-0.001914	582.3541963101079	102.27	0.85596	102.27	101.95	102.81	0					90	19	7	0	0	0	1.0075	1	13078	13078		35.152	7.0705	1	8600900	+		12357	32673	8572	8589	13816	13816					0.12132017751082458
ELPNQKLLY	9	Unmodified	_ELPNQKLLY_					0	0	0			REV__ENST00000430904.1_1_2:197127801-197127870:+|nuORF	REV__ENST00000430904.1_1_2:197127801-197127870:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.7830200195312	2	559.316232	1116.61791	-0.081913	-4.5815E-05	2.7052	0.0015131	2.6233	0.0014673	559.3176167847392	36.678	0.63599	36.473	36.203	36.839	-0.20518					32	15	3	0	0	0	0.024263	1	2870	2870		60.972	4.2509	1	510960	+		12358	32362	8573	8590	13817	13817					0.06426585165877441
ELPNQKLLY	9	Unmodified	_ELPNQKLLY_					0	0	0			REV__ENST00000430904.1_1_2:197127801-197127870:+|nuORF	REV__ENST00000430904.1_1_2:197127801-197127870:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.782470703125	2	559.316232	1116.61791	-0.1372	-7.6738E-05	3.072	0.0017182	2.9348	0.0016415	559.3177029832651	36.667	0.48335	36.45	36.245	36.729	-0.21661					29	11	3	0	0	0	0.02435	1	2869	2869		51.335	13.524	1	457050	+		12359	32362	8573	8590	13818	13818					0.06426585165877441
ELPNQKLLY	9	Unmodified	_ELPNQKLLY_					0	0	0			REV__ENST00000430904.1_1_2:197127801-197127870:+|nuORF	REV__ENST00000430904.1_1_2:197127801-197127870:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.316232	1116.61791	1.4491	0.0008105	1.266	0.00070807	2.7151	0.0015186	559.316750934661	36.609	0.56413	36.41	36.172	36.736	-0.19829	-0.034037	-0.0011165	NaN	60.972	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417380	+		12360	32362	8573	8590							0.06426585165877441
ELPPAAVETP	10	Unmodified	_ELPPAAVETP_					0	0	0			REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.7738037109375	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	1.0142	1	13735	13735		44.117	3.3386	1	6386000	+		12361	20005	8574	8591	13819	13819					0.01806330486465413
ELPPLVALQA	10	Unmodified	_ELPPLVALQA_					0	0	0			REV__ENST00000521478.1_1_7:27189932-27190070:-|nuORF	REV__ENST00000521478.1_1_7:27189932-27190070:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2979125976562	2	525.813325	1049.6121	-0.27206	-0.00014305	-0.32758	-0.00017225	-0.59964	-0.0003153	525.8134785750075	54.851	0.41382	54.949	54.769	55.183	0.098015					29	11	4	0	0	0	0.03519	1	5940	5940		40.778	3.6191	1	444500	+		12362	34319	8575	8592	13820	13820					0.089274866542155
ELPPQEPQ	8	Unmodified	_ELPPQEPQ_					0	0	0			REV__nc|ENSG00000087460|Q5JWF2-2|GNAS	REV__nc|ENSG00000087460|Q5JWF2-2|GNAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.7502746582031	2	469.234907	936.455261	0.34598	0.00016234	0.33685	0.00015806	0.68283	0.00032041	469.2346956448474	54.256	0.75571	54.109	53.889	54.644	-0.14724					48	21	3	0	0	0	0.027866	1	5861	5861		27.882	0	1	1187100	+		12363	36491	8576	8593	13821	13821					-0.015507982361327777
ELPPWPPRS	9	Unmodified	_ELPPWPPRS_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.332275390625	2	539.787641	1077.56073	-0.68431	-0.00036938	-1.7124	-0.00092436	-2.3968	-0.0012937	539.7893350535932	67.217	1.2046	67.217	66.588	67.792	0					64	29	4	0	0	0	0.024344	1	8021	8021		45.972	11.8	1	594920	+		12364	27880	8577	8594	13822	13822					0.02505162680131434
ELPQLFQDD	9	Unmodified	_ELPQLFQDD_					0	0	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.810791015625	2	552.764029	1103.5135	-0.81023	-0.00044787	2.2022	0.0012173	1.392	0.00076943	552.7652175579498	51.95	0.79288	51.803	51.228	52.021	-0.14735					30	22	2	0	0	0	0.024427	1	5474	5474		42.396	0	1	163650			12365	6955	8578	8595	13823	13823					-0.03411161381495731
ELPQLTQQAP	10	Unmodified	_ELPQLTQQAP_					0	0	0		ENST00000529652.1_1_17:80551717-80553973:+|nuORF	ENST00000529652.1_1_17:80551717-80553973:+|nuORF	ENST00000529652.1_1_17:80551717-80553973:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.3195190429688	2	562.800946	1123.58734	-0.44797	-0.00025212	4.2504	0.0023922	3.8025	0.00214	562.8032868870931	95.439	0.76957	95.439	95.222	95.991	0					33	17	3	0	0	0	0.03519	1	12191	12191		39.253	5.0803	1	301400			12366	16212	8579	8596	13824	13824					0.030488067808164487
ELPQNVIVH	9	Unmodified	_ELPQNVIVH_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7939453125	2	524.792924	1047.57129	-0.16163	-8.4824E-05	0.93562	0.00049101	0.77399	0.00040618	524.7933175490367	70.197	0.47714	70.209	69.831	70.308	0.012421					16	13	2	0	0	0	0.85329	1	8394	8394		35.618	2.1027	1	832110	+		12367	20649	8580	8597	13825	13825					0.04941145334578323
ELPRAQPME	9	Unmodified	_ELPRAQPME_					0	0	0			REV__nc|ENSG00000146755|Q86XT4-2|TRIM50	REV__nc|ENSG00000146755|Q86XT4-2|TRIM50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8002319335938	2	535.768591	1069.52263	-0.28944	-0.00015508	-0.18646	-9.9902E-05	-0.47591	-0.00025498	535.7684336347255	40.522	2.0379	40.522	39.254	41.292	0					109	57	2	0	0	0	0.024427	1	3695	3695		42.396	11.892	1	1394200	+		12368	24509	8581	8598	13826	13826					-0.009350912968329794
ELPRGEGR	8	Unmodified	_ELPRGEGR_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.77215576171875	2	457.246141	912.477728	-0.17908	-8.1883E-05	0.72622	0.00033206	0.54714	0.00025018	457.2469871662664	22.477	0.23559	22.401	22.27	22.506	-0.075296					6	4	2	0	0	0	0.027866	1	794	794		12.959	0	1	11804	+		12369	24415	8582	8599	13827	13827					0.01798845952157535
ELPRGEGR	8	Unmodified	_ELPRGEGR_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.246141	912.477728	0.46774	0.00021387	0.47421	0.00021683	0.94195	0.0004307	457.24479526890127	22.282	0.13972	22.093	22.007	22.147	-0.18894	-0.16382	-8.7488E-05	NaN	24.203	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11615	+		12370	24415	8582	8599							0.01798845952157535
ELPRKPAL	8	Unmodified	_ELPRKPAL_					0	0	0			REV__ENSG00000148411|ENST00000277554|NACC2	REV__ENSG00000148411|ENST00000277554|NACC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7611083984375	2	462.287277	922.560001	0.018592	8.5947E-06	0.31671	0.00014641	0.3353	0.000155	462.28734666119584	48.651	0.48915	48.718	48.417	48.906	0.066795					22	13	3	0	0	0	0.027866	1	4897	4897		25.45	12.491	1	139640	+		12371	24616	8583	8600	13828	13828					0.09562368031083679
ELPRPYVS	8	Unmodified	_ELPRPYVS_					0	0	0			REV__ENST00000357066.7_1_19:2071060-2071678:-|nuORF	REV__ENST00000357066.7_1_19:2071060-2071678:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.27655029296875	2	480.761092	959.507631	-0.90222	-0.00043375	0.3046	0.00014644	-0.59762	-0.00028731	480.7610267804534	48.824	0.43226	48.544	48.359	48.791	-0.27977					19	11	2	0	0	0	0.027866	1	4842	4842		31.955	6.3808	1	351170	+		12372	30815	8584	8601	13829	13829					0.02625784897475114
ELPRTQTDY	9	Unmodified	_ELPRTQTDY_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.8284301757812	2	561.774928	1121.5353	-0.61377	-0.0003448	-0.23768	-0.00013352	-0.85145	-0.00047832	561.7747747347915	43.733	0.49119	43.629	43.434	43.925	-0.10468					28	12	3	0	0	0	0.024457	1	4038	4038		37.159	1.5408	1	421750			12373	8711	8585	8602	13830	13830					-0.020603566329327805
ELPRTQTDY	9	Unmodified	_ELPRTQTDY_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.8291625976562	2	561.774928	1121.5353	-1.1299	-0.00063474	0.34691	0.00019489	-0.78297	-0.00043985	561.7746491190736	43.933	0.54824	43.714	43.316	43.864	-0.21939					27	14	3	0	0	0	0.024457	1	4043	4043		37.159	11.709	1	439000			12374	8711	8585	8602	13831	13831					-0.020603566329327805
ELPSCACC	8	Unmodified	_ELPSCACC_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.15130615234375	2	413.150617	824.286681	0.30815	0.00012731	0.093362	3.8573E-05	0.40152	0.00016589	413.1508417125863	81.516	0.96786	81.287	80.98	81.948	-0.2289					61	22	4	0	0	0	1.0574	1	9779	9779		26.796	0	1	1506100			12375	9246	8586	8603	13832	13832					-0.13249062737315853
ELPSCACC	8	Unmodified	_ELPSCACC_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.1507873535156	2	413.150617	824.286681	-0.32166	-0.00013289	1.089	0.0004499	0.7673	0.00031701	413.1510479166516	81.559	1.1836	81.416	80.9	82.084	-0.14248					74	27	5	0	0	0	1.0133	2	9793	9783;9793		35.201	5.3592	1	1175700			12376	9246	8586	8603	13833;13834	13834					-0.13249062737315853
ELPTPELPSK	10	Unmodified	_ELPTPELPSK_					0	0	0		nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.7804565429688	2	555.805697	1109.59684	0.67955	0.0003777	-0.37564	-0.00020878	0.30391	0.00016892	555.8043963416416	58.872	0.86997	58.685	58.206	59.076	-0.18705					65	23	5	0	0	0	0.03519	1	6656	6656		45.972	22.45	1	798050			12377	3879	8587	8604	13835	13835					0.04642575066304744
ELPTPHGRLTG	11	Unmodified	_ELPTPHGRLTG_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3425903320312	2	589.319837	1176.62512	-0.92608	-0.00054576	-3.3758	-0.0019894	-4.3019	-0.0025352	589.3185160935141	92.5	0.28175	92.378	92.182	92.464	-0.12242					9	6	2	0	0	0	0.024741	1	11368	11368		30.318	3.2704	1	105210	+		12378	21125	8588	8605	13836	13836					0.0438731776628174
ELPVKEEEP	9	Unmodified	_ELPVKEEEP_					0	0	0		ENSG00000205323|ENST00000336133|SARNP;ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.80859375	2	535.274229	1068.53391	-0.76425	-0.00040908	-1.5158	-0.00081135	-2.28	-0.0012204	535.2731995336304	85.401	0.74518	85.343	84.939	85.684	-0.05761					27	17	2	0	0	0	0.023837	1	10632	10632		45.972	0	1	149950			12379	10416	8589	8606	13837	13837					0.0023800927829142893
ELPVRFVK	8	Unmodified	_ELPVRFVK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2871398925781	2	494.302927	986.591301	-0.080971	-4.0024E-05	0.30872	0.0001526	0.22775	0.00011258	494.30286199514836	67.572	0.45893	67.338	67.012	67.471	-0.23375					17	10	2	0	0	0	0.027866	1	7786	7786		23.042	0	1	339180			12380	6479	8590	8607	13838	13838					0.09746941065191095
ELPWAEKV	8	Unmodified	_ELPWAEKV_					0	0	0			REV__chr5:136062913-136063186|118|83.27|0.52|7.31|+|0|TE_info:MIR,MIR_dup58535,MIR,SINE,donor,+,136062777,136062913|None,TGFBI|1	REV__chr5:136062913-136063186|118|83.27|0.52|7.31|+|0|TE_info:MIR,MIR_dup58535,MIR,SINE,donor,+,136062777,136062913|None,TGFBI|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2540588378906	2	486.263468	970.512382	-0.29197	-0.00014198	4.2959	0.0020889	4.0039	0.001947	486.2654462753611	64.181	1.2945	63.929	63.59	64.884	-0.25141					60	34	2	0	0	0	0.027866	1	7623	7623		53.351	0	1	961280	+		12381	19442	8591	8608	13839	13839					0.025946690402406603
ELPYNDYFEYF	11	Unmodified	_ELPYNDYFEYF_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7460021972656	3	500.550364	1498.62926	0.37264	0.00018653	2.2863	0.0011444	2.6589	0.0013309	500.5526043542288	53.188	0.23568	52.93	52.803	53.039	-0.25838					8	5	3	0	0	0	0.024851	1	5566	5566		14.086	6.0517	1	78990			12382	9897	8592	8609	13840	13840					-0.1001068232135367
ELQAELQSI	9	Unmodified	_ELQAELQSI_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.3139038085938	2	515.774396	1029.53424	0.65486	0.00033776	-1.071	-0.00055238	-0.4161	-0.00021462	516.2751800030184	97.897	0.20409	97.76	97.65	97.854	-0.1367					6	4	2	0	0	0	0.024438	1	12120	12120		29.17	3.596	1	57400	+		12383	20192	8593	8610	13841	13841					0.020654289981621332
ELQAKLHEV	9	Unmodified	_ELQAKLHEV_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2766723632812	2	533.798206	1065.58186	-0.59216	-0.00031609	0.78088	0.00041683	0.18872	0.00010074	533.7985940591873	51.995	0.44417	51.876	51.682	52.126	-0.11876					22	11	2	0	0	0	0.024466	1	5389	5389		24.519	11.065	1	808550	+		12384	26128	8594	8611	13842	13842					0.051691279890064834
ELQCLLEKP	9	Unmodified	_ELQCLLEKP_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.77587890625	2	536.788992	1071.56343	-1.5636	-0.00083933	-1.4661	-0.00078697	-3.0297	-0.0016263	536.7880702548407	79.836	1.0452	79.664	79.109	80.154	-0.17225					38	24	2	0	0	0	0.0242	1	9819	9819		51.193	3.5354	1	340720	+		12385	28047	8595	8612	13843	13843					0.0305125002278146
ELQEAPAAPE	10	Unmodified	_ELQEAPAAPE_					0	0	0		ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7484741210938	2	527.756204	1053.49785	0.5174	0.00027306	3.2113	0.0016948	3.7286	0.0019678	527.7574151364603	85.441	0.33456	85.291	85.158	85.492	-0.14967					9	7	2	0	0	0	0.03519	1	10345	10345		49.536	24.086	1	29962			12386	8890	8596	8613	13844	13844					-0.026754478985594687
ELQEKFLSL	9	Unmodified	_ELQEKFLSL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MSMS	OPSCC_40_ClassI_Rep-1	4	553.80517578125	2	553.808239	1105.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.089	1	67.834	67.334	68.334	-0.25516								0	0	0	0.0099265	1	7854	7854		167.23	4.0778	1				12387	3658	8597	8614	13845	13845					0.05334878928965736
ELQEKFLSL	9	Unmodified	_ELQEKFLSL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MSMS	OPSCC_40_ClassI_Rep-1	4	553.8057861328125	2	553.808239	1105.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.158	1	67.903	67.403	68.403	-0.25516								0	0	0	0.018764	1	7864	7864		132.76	3.3366	1				12388	3658	8597	8614	13846	13846					0.05334878928965736
ELQEKFLSL	9	Unmodified	_ELQEKFLSL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MSMS	OPSCC_40_ClassI_Rep-2	5	553.8036499023438	2	553.808239	1105.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.084	1	67.85	67.35	68.35	-0.23376								0	0	0	0.0017757	1	7861	7861		185.55	23.297	1				12389	3658	8597	8614	13847	13847					0.05334878928965736
ELQEKFLSL	9	Unmodified	_ELQEKFLSL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MSMS	OPSCC_40_ClassI_Rep-3	6	553.804443359375	2	553.808239	1105.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.079	1	67.84	67.34	68.34	-0.23814								0	0	0	0.014314	1	7850	7850		153.04	16.768	1				12390	3658	8597	8614	13848	13848					0.05334878928965736
ELQELFSGID	10	Unmodified	_ELQELFSGID_					0	0	0		nc|ENSG00000125967|Q96P71-3|NECAB3;ENST00000488489.5_1_20:32247922-32262169:-|nuORF;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3;ENST00000484824.2_1_20:32257487-32262158:-|nuORF;ENST00000606699.5_1_20:32258166-32262158:-|nuORF	nc|ENSG00000125967|Q96P71-3|NECAB3	nc|ENSG00000125967|Q96P71-3|NECAB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.8368530273438	2	575.784961	1149.55537	-1.0306	-0.00059338	1.8223	0.0010493	0.79175	0.00045588	575.7858381770588	52.121	1.449	52.121	51.105	52.554	0					70	39	3	0	0	0	0.03519	1	5487	5487		30.318	0	1	512380			12391	4168	8598	8615	13849	13849					-0.013426056929802144
ELQEQLKKVT	10	Unmodified	_ELQEQLKKVT_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2195739746094	3	405.902961	1214.68705	-0.81774	-0.00033192	1.6841	0.00068357	0.86634	0.00035165	405.9036131426227	46.282	0.64853	46.08	45.855	46.504	-0.20226					38	17	3	0	0	0	0.03519	1	4444	4444		21.032	0	1	524950	+		12392	22849	8599	8616	13850	13850					0.088296243947525
ELQEWTPPP	9	Unmodified	_ELQEWTPPP_					0	0	0			REV__RC3H1|p.L453Sfs*18|1|0.09|ENSG00000135870|chr1:173965099-173965100|-/AAAAATAGAT|frameshift_variant	REV__RC3H1|p.L453Sfs*18|1|0.09|ENSG00000135870|chr1:173965099-173965100|-/AAAAATAGAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8137817382812	2	548.769114	1095.52368	-0.57903	-0.00031775	3.403	0.0018675	2.824	0.0015497	548.7704840358463	57.068	1.1216	56.904	56.497	57.619	-0.16431					78	30	4	0	0	0	0.024381	1	6305	6305		45.952	19.259	1	1699300	+		12393	23589	8600	8617	13851	13851					-0.02026553656287433
ELQEWYKGF	9	Unmodified	_ELQEWYKGF_					0	0	0		ENSG00000121905|ENST00000373467|HPCA;ENSG00000115756|ENST00000307845|HPCAL1	ENSG00000121905|ENST00000373467|HPCA	ENSG00000121905|ENST00000373467|HPCA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	601.2774047851562	2	600.290214	1198.56587	-1.5042	-0.00090293	-2.1621	-0.0012979	-3.6662	-0.0022008	600.2888620381863	84.251	0.62799	84.251	84.041	84.669	0					23	14	2	0	0	0	0.024292	1	10598	10598		49.442	0	1	228790			12394	3486	8601	8618	13852	13852					-0.025465782479159316
ELQGALRAL	9	Unmodified	_ELQGALRAL_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2952880859375	2	485.787641	969.56073	1.0437	0.00050703	1.3184	0.00064048	2.3622	0.0011475	485.7870963927705	25.185	0.2971	25.014	24.821	25.118	-0.17151					9	6	2	0	0	0	0.024495	1	1120	1120		34.173	0	1	57380	+		12395	27627	8602	8619	13853	13853					0.07473162680150836
ELQGCEVNGCS	11	Unmodified	_ELQGCEVNGCS_					0	0	0		CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.2877197265625	2	569.728806	1137.44306	0.12666	7.2161E-05	3.4368	0.001958	3.5634	0.0020302	569.7306783714358	46.521	0.17739	46.425	46.295	46.473	-0.096649					8	4	2	0	0	0	0.024762	1	4483	4483		43.651	8.4988	1	75812		+	12396	544;10183	8603	8620	13854	13854					-0.12016526033107766
ELQGGQLQDE	10	Unmodified	_ELQGGQLQDE_					0	0	0			REV__nc|ENSG00000128609|Q16718-2|NDUFA5	REV__nc|ENSG00000128609|Q16718-2|NDUFA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8324584960938	2	558.762017	1115.50948	-0.591	-0.00033023	1.9364	0.001082	1.3454	0.00075176	558.7631648190531	22.548	0.59739	22.363	22.094	22.692	-0.18539					16	12	2	0	0	0	0.03519	1	801	801		101.6	27.346	1	54084	+		12397	23002	8604	8621	13855	13855					-0.04365250875230231
ELQGKLQRLH	10	Unmodified	_ELQGKLQRLH_					0	0	0			REV__PPFIA4|p.E396K|1|0.15|ENSG00000143847|chr1:203048272-203048272|G/A|missense_variant	REV__PPFIA4|p.E396K|1|0.15|ENSG00000143847|chr1:203048272-203048272|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3519897460938	2	611.356754	1220.69895	-0.35919	-0.00021959	-1.0072	-0.00061577	-1.3664	-0.00083536	611.3559902690897	92.567	2.8634	92.445	90.59	93.453	-0.12241					191	67	5	0	0	0	1.0393	1	11346	11346		40.778	0	1	4932800	+		12398	37394	8605	8622	13856	13856					0.09743285928584555
ELQGLTPEQD	10	Unmodified	_ELQGLTPEQD_					0	0	0			REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2888793945312	2	565.272218	1128.52988	0.39626	0.000224	-3.2296	-0.0018256	-2.8334	-0.0016016	565.2701834070657	72.148	0.74336	71.886	71.559	72.302	-0.26199					35	17	3	0	0	0	0.03519	1	8486	8486		35.152	0	1	268260	+		12399	20047	8606	8623	13857	13857					-0.029240802154163248
ELQGMNEY	8	Oxidation (M)	_ELQGM(Oxidation (M))NEY_		ELQGM(1)NEY		ELQGM(85)NEY	0	0	1		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2082214355469	2	500.208032	998.401511	-0.098704	-4.9372E-05	-0.16699	-8.3529E-05	-0.26569	-0.0001329	500.2079278204431	41.834	0.99577	41.711	41.385	42.38	-0.12299					86	26	4	0	0	0	0.50717	1	3742	3742		84.916	16.129	1	17270000			12400	3129	8607	8624	13858	13858		116			-0.09775338730162275
ELQIAYVSRQ	10	Unmodified	_ELQIAYVSRQ_					0	0	0		MAP4K3|p.E119Q|1|0.17|ENSG00000011566|chr2:39337537-39337537|C/G|missense_variant	MAP4K3|p.E119Q|1|0.17|ENSG00000011566|chr2:39337537-39337537|C/G|missense_variant	MAP4K3|p.E119Q|1|0.17|ENSG00000011566|chr2:39337537-39337537|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.55487060546875	3	402.887422	1205.64044	0.4209	0.00016958	-0.4144	-0.00016696	0.0065013	2.6193E-06	402.8870843611611	22.72	0.41085	22.535	22.281	22.692	-0.18539					14	8	2	0	0	0	0.03519	1	802	802		33.922	13.891	1	37335			12401	17947	8608	8625	13859	13859					0.04584184563486815
ELQKLLEP	8	Unmodified	_ELQKLLEP_					0	0	0		ENSG00000222028|ENST00000408907|PSMB11	ENSG00000222028|ENST00000408907|PSMB11	ENSG00000222028|ENST00000408907|PSMB11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.25628662109375	2	485.2844	968.554247	-0.23007	-0.00011165	1.6637	0.00080739	1.4337	0.00069574	485.28505894131797	52.964	1.5629	52.817	51.676	53.239	-0.14723					47	41	2	0	0	0	0.027866	1	5705	5705		37.159	0	1	232780			12402	10636	8609	8626	13860	13860					0.06871224728763536
ELQKQLNSI	9	Unmodified	_ELQKQLNSI_					0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.8300170898438	2	536.803488	1071.59242	-1.048	-0.00056255	-3.3029	-0.001773	-4.3509	-0.0023356	536.8009339034029	48.894	1.0204	48.793	48.471	49.491	-0.1008					54	26	4	0	0	0	0.024457	1	4981	4981		29.15	0	1	998450	+	+	12403	19595	8610	8627	13861	13861					0.05949110643427957
ELQKQLNSI	9	Unmodified	_ELQKQLNSI_					0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.803488	1071.59242	-0.634	-0.00034033	-4.693	-0.0025192	-5.3269	-0.0028595	536.8008002343327	49.263	0.63324	48.983	48.647	49.28	-0.27977	0.11686	-0.00042611	NaN	10.265	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1087400	+	+	12404	19595	8610	8627							0.05949110643427957
ELQKRFIL	8	Unmodified	_ELQKRFIL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3069458007812	2	523.821484	1045.62842	0.035577	1.8636E-05	-0.9986	-0.00052309	-0.96303	-0.00050445	523.8208765080121	71.088	0.47304	71.088	70.828	71.301	0					22	11	3	0	0	0	0.027866	1	8632	8632		11.511	0	1	289420			12405	4178	8611	8628	13862	13862					0.1074261261094307
ELQKRFIL	8	Unmodified	_ELQKRFIL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MSMS	OPSCC_40_ClassI_Rep-1	4	523.8214111328125	2	523.821484	1045.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.315	1	48.217	47.717	48.717	-0.097553								0	0	0	0.30817	1	4787	4787		119.56	9.2196	1				12406	4178	8611	8628	13863	13863					0.1074261261094307
ELQKRFIL	8	Unmodified	_ELQKRFIL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8212890625	2	523.821484	1045.62842	-1.0109	-0.00052951	0.13312	6.9732E-05	-0.87774	-0.00045978	523.8215921563113	48.547	1.6941	48.271	47.63	49.324	-0.27598					132	45	4	0	0	0	0.39824	1	4809	4809		97.473	17.533	1	19150000			12407	4178	8611	8628	13864	13864					0.1074261261094307
ELQKRFIL	8	Unmodified	_ELQKRFIL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.8214111328125	2	523.821484	1045.62842	0.073224	3.8356E-05	-0.98076	-0.00051374	-0.90754	-0.00047539	523.821047079256	48.33	1.7007	48.143	47.561	49.261	-0.18684					145	45	4	0	0	0	0.46709	2	4764	4764;4811		88.643	8.3619	1	16926000			12408	4178	8611	8628	13865;13866	13865					0.1074261261094307
ELQKRFRKL	9	Unmodified	_ELQKRFRKL_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.5867614746094	3	406.587418	1216.74043	-0.18538	-7.5374E-05	-0.27335	-0.00011114	-0.45873	-0.00018652	406.5876067950022	25.442	1.4271	25.215	24.887	26.314	-0.22683					124	36	6	0	0	0	0.53979	3	1188	1188;1198;1210		56.721	0	1	39997000	+		12409	23184	8612	8629	13867;13868;13869	13867					0.14072466687935048
ELQKRFRKL	9	Unmodified	_ELQKRFRKL_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	609.3779296875	2	609.377489	1216.74043	-1.5862	-0.00096659	1.7129	0.0010438	0.12671	7.7217E-05	609.3784488642979	25.443	0.67122	25.216	24.931	25.602	-0.22683					45	15	4	0	0	0	0.28047	2	1214	1214;1225		44.377	0	1	963160	+		12410	23184	8612	8629	13870;13871	13870					0.14072466687935048
ELQKRFRKL	9	Unmodified	_ELQKRFRKL_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.5874938964844	3	406.587418	1216.74043	0.41999	0.00017076	-0.79491	-0.0003232	-0.37491	-0.00015244	406.5873798753871	25.209	2.1595	25.038	24.647	26.806	-0.17078					142	54	6	0	0	0	0.34489	3	1149	1139;1149;1197		69.628	0	1	30937000	+		12411	23184	8612	8629	13872;13873;13874	13873					0.14072466687935048
ELQKRFRKL	9	Unmodified	_ELQKRFRKL_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.587158203125	3	406.587418	1216.74043	0.3256	0.00013238	-0.82801	-0.00033666	-0.50242	-0.00020428	406.5873231361823	25.27	2.8978	25.098	24.732	27.63	-0.17151					174	72	6	0	0	0	0.40693	1	1131	1131		65.465	0	1	31222000	+		12412	23184	8612	8629	13875	13875					0.14072466687935048
ELQKRFRKL	9	Unmodified	_ELQKRFRKL_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	609.377489	1216.74043	-1.5862	-0.00096659	1.7129	0.0010438	0.12671	7.7217E-05	609.3784488642979	25.443	0.67122	25.216	24.931	25.602	-0.22683	0.09517	0.0010206	NaN	44.377	45	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963160	+		12413	23184	8612	8629							0.14072466687935048
ELQKRKQV	8	Unmodified	_ELQKRKQV_					0	0	0			REV__ENST00000473525.1_1_X:70516758-70517827:+|nuORF	REV__ENST00000473525.1_1_X:70516758-70517827:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7960205078125	2	514.81419	1027.61383	-0.17714	-9.1193E-05	1.065	0.00054829	0.88788	0.00045709	514.8147023953502	23.863	0.39379	23.683	23.519	23.913	-0.17989					11	8	2	0	0	0	0.027866	1	967	967		68.485	0	1	73533	+		12414	24530	8613	8630	13876	13876					0.10112540462819197
ELQKRLQN	8	Unmodified	_ELQKRLQN_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MSMS	OPSCC_40_ClassI_Rep-2	5	514.7960205078125	2	514.795998	1027.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.757	1	23.577	23.077	24.077	-0.17989								0	0	0	0.36617	1	967	967		71.378	0.082209	1		+		12415	21569	8614	8631	13877	13877					0.0647566356610696
ELQKRSVMA	9	Unmodified	_ELQKRSVMA_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3004150390625	2	531.292233	1060.56991	-1.1894	-0.00063192	-1.9333	-0.0010271	-3.1227	-0.0016591	531.2911051396756	38.601	0.42591	38.38	38.153	38.579	-0.22148					22	10	3	0	0	0	0.024292	1	3225	3225		32.812	0	1	409950			12416	15725	8615	8632	13878	13878					0.0420518797418481
ELQKSMIL	8	Unmodified	_ELQKSMIL_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2922668457031	2	481.272978	960.531403	-0.13553	-6.5229E-05	0.096929	4.6649E-05	-0.038606	-1.858E-05	481.272974855628	31.998	0.91501	31.84	31.569	32.484	-0.15772					39	21	2	0	0	0	0.027866	1	2128	2128		47.916	5.4411	1	523690	+		12417	28456	8616	8633	13879	13879					0.04955882339652362
ELQKYLNF	8	Unmodified	_ELQKYLNF_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7484130859375	2	527.782025	1053.5495	0.20022	0.00010567	0.74976	0.00039571	0.94998	0.00050138	527.781704335291	85.277	0.62038	85.082	84.724	85.345	-0.19508					22	14	2	0	0	0	0.027866	1	10274	10274		31.955	0	1	60455			12418	4514	8617	8634	13880	13880					0.024863405860060084
ELQLEKAW	8	Unmodified	_ELQLEKAW_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.2774658203125	2	508.7742	1015.53385	-0.54006	-0.00027477	-1.8697	-0.00095127	-2.4098	-0.001226	508.77200365050044	33.945	1.2	33.945	33.626	34.826	0					58	30	3	0	0	0	0.87148	1	2545	2545		53.351	2.016	1	5734900	+		12419	26426	8618	8635	13881	13881					0.02670054068948957
ELQLLEEYSE	10	Unmodified	_ELQLLEEYSE_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	417.9105224609375	3	418.202964	1251.58706	-0.1967	-8.2261E-05	-4.2492	-0.001777	-4.4459	-0.0018593	418.2010947088389	21.566	0.66855	21.476	21.207	21.875	-0.090092					18	13	2	0	0	0	0.03519	1	664	664		20.03	0	1	70373	+		12420	24111	8619	8636	13882	13882					-0.028666577297144613
ELQLLEKV	8	Unmodified	_ELQLLEKV_					0	0	0		nc|ENSG00000101445|Q96T49-2|PPP1R16B;ENSG00000101445|ENST00000299824|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2921142578125	2	486.292225	970.569897	-0.242	-0.00011768	0.48536	0.00023603	0.24336	0.00011835	486.292292201374	77.968	0.69109	77.968	77.672	78.363	0					40	16	3	0	0	0	0.34573	1	9641	9641		104.75	8.9314	1	1924800			12421	2326	8620	8637	13883	13883					0.08343511245811897
ELQLLEKV	8	Unmodified	_ELQLLEKV_					0	0	0		nc|ENSG00000101445|Q96T49-2|PPP1R16B;ENSG00000101445|ENST00000299824|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.29205322265625	2	486.292225	970.569897	0.74679	0.00036316	-0.54757	-0.00026628	0.19922	9.6881E-05	486.2917820445947	78.134	0.65578	77.942	77.683	78.339	-0.1921					42	15	3	0	0	0	0.64735	1	9636	9636		71.877	2.2498	1	1841700			12422	2326	8620	8637	13884	13884					0.08343511245811897
ELQLLEKV	8	Unmodified	_ELQLLEKV_					0	0	0		nc|ENSG00000101445|Q96T49-2|PPP1R16B;ENSG00000101445|ENST00000299824|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	nc|ENSG00000101445|Q96T49-2|PPP1R16B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2922668457031	2	486.292225	970.569897	-0.83607	-0.00040658	1.3495	0.00065623	0.51339	0.00024966	486.2926510602458	77.993	0.69963	78.009	77.739	78.438	0.015907					49	16	5	0	0	0	0.42912	1	9578	9578		93.195	10.955	1	1985600			12423	2326	8620	8637	13885	13885					0.08343511245811897
ELQLLFNKG	9	Unmodified	_ELQLLFNKG_					0	0	0			REV__ENST00000436551.1_1_2:42159370-42160581:-|nuORF	REV__ENST00000436551.1_1_2:42159370-42160581:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.8114013671875	2	531.303124	1060.5917	0.12337	6.5549E-05	-0.014682	-7.8004E-06	0.10869	5.7748E-05	531.3028706980966	61.28	0.37887	61.351	61.095	61.474	0.071129					15	9	2	0	0	0	0.024466	1	7024	7024		24.519	12.883	1	730520	+		12424	32281	8621	8638	13886	13886					0.06382315994369492
ELQLPPKAAAL	11	Unmodified	_ELQLPPKAAAL_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8433227539062	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	0.96599	1	11023	11023		44.377	1.5129	1	6382400			12425	4530	8622	8639	13887	13887					0.10690847091291289
ELQLQRIRID	10	Unmodified	_ELQLQRIRID_					0	0	0			REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.8609313964844	3	428.585854	1282.73573	-1.1437	-0.00049017	1.4301	0.0006129	0.28635	0.00012273	428.58635651909304	20.853	0.78072	20.853	20.562	21.342	0					37	15	4	0	0	0	0.03519	1	608	608		21.78	1.4654	1	106090	+		12426	21402	8623	8640	13888	13888					0.10567537754513978
ELQLREVR	8	Unmodified	_ELQLREVR_					0	0	0			REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7549438476562	2	521.803823	1041.59309	0.013684	7.1402E-06	-2.2352	-0.0011663	-2.2215	-0.0011592	521.8030335498721	23.82	0.84189	23.64	23.242	24.084	-0.17989					27	19	2	0	0	0	0.027866	1	997	997		12.207	0	1	38965	+		12427	19259	8624	8641	13889	13889					0.073959500831279
ELQLREVR	8	Unmodified	_ELQLREVR_					0	0	0			REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.803823	1041.59309	-0.95342	-0.0004975	-0.36466	-0.00019028	-1.3181	-0.00068778	521.8042156497614	23.646	0.3729	23.646	23.321	23.694	0	-0.028099	-4.0178E-05	NaN	12.207	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28901	+		12428	19259	8624	8641							0.073959500831279
ELQLREVR	8	Unmodified	_ELQLREVR_					0	0	0			REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.803823	1041.59309	-0.84867	-0.00044284	2.5078	0.0013086	1.6591	0.00086574	521.8045057584026	23.616	0.25626	23.555	23.386	23.643	-0.060862	-0.11917	0.0029576	NaN	12.207	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25536	+		12429	19259	8624	8641							0.073959500831279
ELQLREVR	8	Unmodified	_ELQLREVR_					0	0	0			REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.803823	1041.59309	-0.47534	-0.00024803	1.5205	0.00079341	1.0452	0.00054537	521.8042537550923	23.523	0.29813	23.599	23.392	23.69	0.076239	-0.07509	0.0019272	NaN	12.207	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38322	+		12430	19259	8624	8641							0.073959500831279
ELQLREVR	8	Unmodified	_ELQLREVR_					0	0	0			REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	REV__CCDC88C|p.E329Q|1|0.29|ENSG00000015133|chr14:91338070-91338070|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.803823	1041.59309	-0.16313	-8.5122E-05	-1.1322	-0.00059077	-1.2953	-0.00067589	521.8032385174434	24.147	0.8677	23.932	23.266	24.134	-0.2151	0.25702	-0.00084115	NaN	12.207	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47513	+		12431	19259	8624	8641							0.073959500831279
ELQLSMLEI	9	Unmodified	_ELQLSMLEI_					0	0	0		nc|ENSG00000173226|Q15051-2|IQCB1;ENSG00000173226|ENST00000310864|IQCB1	nc|ENSG00000173226|Q15051-2|IQCB1	nc|ENSG00000173226|Q15051-2|IQCB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2887573242188	2	538.288825	1074.5631	-0.16391	-8.8232E-05	0.066303	3.569E-05	-0.097609	-5.2542E-05	538.2886959262779	89.621	0.71303	89.6	89.241	89.954	-0.021645					31	16	2	0	0	0	0.23085	1	11291	11291		84.916	0	1	1310000			12432	8355	8625	8642	13890	13890					0.028798303029361705
ELQLYWFFG	9	Unmodified	_ELQLYWFFG_					0	0	0			REV__ENST00000266069.4_1_20:61577009-61577477:+|nuORF	REV__ENST00000266069.4_1_20:61577009-61577477:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.55950927734375	3	401.534209	1201.5808	0.37467	0.00015044	3.6204	0.0014537	3.9951	0.0016042	401.5353947788603	35.371	0.50879	35.155	34.987	35.496	-0.21555					21	12	2	0	0	0	0.024466	1	2728	2728		13.454	3.3501	1	109850	+		12433	29757	8626	8643	13891	13891					-0.011930863799079816
ELQNKLPKARV	11	Unmodified	_ELQNKLPKARV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	648.3924560546875	2	648.393336	1294.77212	1.2288	0.00079673	-2.0637	-0.0013381	-0.83493	-0.00054136	648.3919129843497	105.35	0.84909	105.35	104.93	105.78	0.00096893					59	28	4	0	0	0	1.013	1	13490	13490		33.922	3.6039	1	1056100			12434	5360	8627	8644	13892	13892					0.13652414651210165
ELQNQLKCDS	10	Unmodified	_ELQNQLKCDS_					0	0	0			REV__nc|ENSG00000186007|Q68G75-2|LEMD1	REV__nc|ENSG00000186007|Q68G75-2|LEMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.27952	1176.54449	-0.54104	-0.00031882	-1.6655	-0.00098146	-2.2066	-0.0013003	589.278400253355	92.779	0.55069	92.635	92.451	93.002	-0.14391					18	12	2	0	0	0	0.03519	1	11400	11400		33.922	13.925	1	147140	+		12435	27821	8628	8645	13893	13893					-0.03672331338930235
ELQPAGHL	8	Unmodified	_ELQPAGHL_					0	0	0		ENST00000368218.8_2_1:156698377-156698662:+|nuORF	ENST00000368218.8_2_1:156698377-156698662:+|nuORF	ENST00000368218.8_2_1:156698377-156698662:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7320556640625	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	0.96719	1	12617	12617		42.474	1.9018	1	3615900			12436	12884	8629	8646	13894	13894					0.012929426919072284
ELQPLFVVL	9	Unmodified	_ELQPLFVVL_					0	0	0		ENST00000314845.7_1_11:46418495-46418936:-|nuORF	ENST00000314845.7_1_11:46418495-46418936:-|nuORF	ENST00000314845.7_1_11:46418495-46418936:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.3161010742188	2	529.318243	1056.62193	-0.52231	-0.00027647	-3.6551	-0.0019347	-4.1774	-0.0022112	529.316281188261	36.335	0.87106	36.13	35.852	36.723	-0.20518					61	22	5	0	0	0	0.33245	1	2833	2833		71.296	3.802	1	7387300			12437	12123	8630	8647	13895	13895					0.09588674659562457
ELQPLRAM	8	Unmodified	_ELQPLRAM_					0	0	0			REV__ENST00000443011.5_2_22:31892530-31904267:+|nuORF	REV__ENST00000443011.5_2_22:31892530-31904267:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2776794433594	2	479.262945	956.511337	1.1299	0.0005415	-0.91004	-0.00043615	0.21983	0.00010535	479.26263085511044	83.199	0.12867	83.108	83	83.129	-0.090454					4	2	2	0	0	0	0.027866	1	10354	10354		21.96	0	1	40015	+		12438	32574	8631	8648	13896	13896					0.03134131399690432
ELQQELLL	8	Unmodified	_ELQQELLL_					0	0	0			REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2642517089844	2	493.281857	984.549162	0.86034	0.00042439	-1.1908	-0.00058738	-0.33042	-0.00016299	493.28102255855185	71.223	1.3158	70.935	70.633	71.949	-0.28857					56	33	3	0	0	0	0.027866	1	8642	8642		85.359	5.9085	1	1433100	+		12439	30761	8632	8649	13897	13897					0.056269208661547054
ELQQELSL	8	Unmodified	_ELQQELSL_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29217529296875	2	480.25584	958.497126	-0.2286	-0.00010979	1.7764	0.00085312	1.5478	0.00074334	480.25668216445206	31.665	0.15485	31.513	31.379	31.534	-0.15231					6	3	2	0	0	0	0.027866	1	2093	2093		99.375	8.5983	1	51982			12440	7965	8633	8650	13898	13898					0.01621757452392103
ELQQLFNL	8	Unmodified	_ELQQLFNL_					0	0	0		ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.81060791015625	2	502.7742	1003.53385	-0.14453	-7.2668E-05	-0.026167	-1.3156E-05	-0.1707	-8.5824E-05	502.77413690023394	69.35	0.53786	69.35	69.131	69.669	0					19	13	2	0	0	0	0.027866	1	8321	8321		58.782	0	1	378400			12441	8598	8634	8651	13899	13899					0.03222054068965008
ELQQVLQL	8	Unmodified	_ELQQVLQL_					0	0	0		ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.303466796875	2	485.782025	969.549496	0.59998	0.00029146	-2.3322	-0.0011329	-1.7322	-0.00084147	485.7791634445052	20.183	0.38733	19.959	19.779	20.167	-0.22344					12	7	2	0	0	0	0.027866	1	498	498		33.516	0	1	27377			12442	1584	8635	8652	13900	13900					0.06350340586004677
ELQQVRAN	8	Unmodified	_ELQQVRAN_					0	0	0			REV__ENSG00000131242|ENST00000621161|RAB11FIP4	REV__ENSG00000131242|ENST00000621161|RAB11FIP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2774353027344	2	479.259248	956.503943	0.26883	0.00012884	3.2107	0.0015387	3.4795	0.0016676	479.2606804231443	83.052	0.29953	82.872	82.722	83.022	-0.18079					9	6	2	0	0	0	0.027866	1	10041	10041		42.396	20.436	1	63162	+		12443	23197	8636	8653	13901	13901					0.023951151236246915
ELQQYLHELDD	11	Unmodified	_ELQQYLHELDD_					0	0	0			REV__nc|ENSG00000159640|P12821-2|ACE	REV__nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.26373291015625	3	468.221018	1401.64122	-0.46847	-0.00021935	0.761	0.00035631	0.29253	0.00013697	468.221334120893	43.832	0.55727	43.727	43.507	44.064	-0.10468					38	14	4	0	0	0	0.024789	1	4028	4028		11.455	0	1	869430	+		12444	25266	8637	8654	13902	13902					-0.043530655781296446
ELQREVKV	8	Unmodified	_ELQREVKV_					0	0	0		ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENST00000559466.1_1_21:9908333-9912191:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7843933105469	2	500.792924	999.571294	-0.44675	-0.00022373	4.3457	0.0021763	3.899	0.0019526	500.79484267187496	72.088	0.407	71.882	71.577	71.984	-0.20602					26	9	4	0	0	0	0.027866	1	8429	8429		53.351	26.659	1	338020			12445	16780	8638	8655	13903	13903					0.07149145334574314
ELQRLREEF	9	Unmodified	_ELQRLREEF_					0	0	0			REV__ENST00000602716.5_1_19:49631560-49640169:+|nuORF	REV__ENST00000602716.5_1_19:49631560-49640169:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.231689453125	3	407.219172	1218.63569	0.083217	3.3888E-05	0.69575	0.00028332	0.77897	0.00031721	407.21932421768327	43.338	0.61827	43.199	42.956	43.575	-0.13929					44	16	4	0	0	0	0.024527	1	4082	4082		24.519	0.28737	1	747760	+		12446	27108	8639	8656	13904	13904					0.035113004207232734
ELQRNQQP	8	Unmodified	_ELQRNQQP_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ;ENST00000465476.1_1_3:101574551-101574776:+|nuORF	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.841796875	2	506.762155	1011.50976	-0.091724	-4.6482E-05	-2.5911	-0.0013131	-2.6828	-0.0013596	506.76063788853503	65.87	0.30782	65.9	65.774	66.082	0.030106					15	7	3	0	0	0	0.027866	1	7723	7723		38.806	0	1	122570			12447	5768	8640	8657	13905	13905					0.004462136352913149
ELQRQLNKP	9	Unmodified	_ELQRQLNKP_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.3224487304688	2	563.32238	1124.63021	-0.26099	-0.00014702	-3.6325	-0.0020463	-3.8935	-0.0021933	563.3199016547475	103.63	1.0996	103.5	102.96	104.06	-0.12783					42	26	3	0	0	0	0.87448	1	12904	12904		34.173	2.2177	1	120270	+		12448	24805	8641	8658	13906	13906					0.07287621628893248
ELQRVVQVLK	10	Unmodified	_ELQRVVQVLK_					0	0	0			REV__nc|ENSG00000284194|O43819|SCO2	REV__nc|ENSG00000284194|O43819|SCO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.56793212890625	3	404.587195	1210.73976	1.3788	0.00055786	3.4401	0.0013918	4.8189	0.0019497	404.5885020545969	41.727	1.4269	41.727	41.469	42.895	0					105	40	4	0	0	0	0.03519	1	3856	3856		36.318	2.2311	1	934330	+		12449	37207	8642	8659	13907	13907					0.14281627248237783
ELQRVVQVLK	10	Unmodified	_ELQRVVQVLK_					0	0	0			REV__nc|ENSG00000284194|O43819|SCO2	REV__nc|ENSG00000284194|O43819|SCO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	404.587195	1210.73976	0.40632	0.00016439	4.4636	0.0018059	4.8699	0.0019703	404.5889451286833	41.792	1.1424	41.669	41.385	42.527	-0.12299	-0.19079	0.00048251	NaN	29.551	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458820	+		12450	37207	8642	8659							0.14281627248237783
ELQRVVQVLK	10	Unmodified	_ELQRVVQVLK_					0	0	0			REV__nc|ENSG00000284194|O43819|SCO2	REV__nc|ENSG00000284194|O43819|SCO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	404.587195	1210.73976	0.3781	0.00015298	4.3879	0.0017753	4.766	0.0019283	404.5888754433354	42.023	1.4125	41.791	41.546	42.959	-0.23186	-0.068198	0.00039066	NaN	29.551	79	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452920	+		12451	37207	8642	8659							0.14281627248237783
ELQRVVQVLK	10	Unmodified	_ELQRVVQVLK_					0	0	0			REV__nc|ENSG00000284194|O43819|SCO2	REV__nc|ENSG00000284194|O43819|SCO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	404.587195	1210.73976	-0.45548	-0.00018428	5.1324	0.0020765	4.6769	0.0018922	404.58918386710116	42.289	0.94065	42.059	41.614	42.555	-0.2303	0.19967	0.0012942	NaN	29.551	58	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328590	+		12452	37207	8642	8659							0.14281627248237783
ELQRYLSLV	9	Unmodified	_ELQRYLSLV_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.7947998046875	2	560.821681	1119.62881	-0.098231	-5.509E-05	1.6417	0.00092071	1.5435	0.00086562	560.8225044636372	71.193	0.56813	71.204	70.976	71.544	0.010735					28	14	3	0	0	0	0.024344	1	8579	8579		54.776	1.8396	1	436340			12453	1774;107	8643	8660	13908	13908					0.07377987540144204
ELQTELKQL	9	Unmodified	_ELQTELKQL_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.7799682617188	2	551.311146	1100.60774	-0.56459	-0.00031127	0.064895	3.5777E-05	-0.4997	-0.00027549	551.3112139266468	45.342	0.34188	45.243	45.048	45.39	-0.099449					16	9	2	0	0	0	0.023837	1	4289	4289		45.972	5.1941	1	251220			12454	185	8644	8661	13909	13909					0.061459774406330325
ELQTELKQL	9	Unmodified	_ELQTELKQL_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.311146	1100.60774	-0.54309	-0.00029941	-4.7493	-0.0026183	-5.2924	-0.0029177	551.307982974107	44.843	0.34815	44.88	44.647	44.995	0.0369	-0.29697	-0.0044359	NaN	45.972	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94752			12455	185	8644	8661							0.061459774406330325
ELQTHDTLV	9	Unmodified	_ELQTHDTLV_					0	0	0		nc|ENSG00000133121|Q9Y3M8-5|STARD13;STARD13|p.S964Qfs*4|1|0.84|ENSG00000133121|chr13:33110031-33110031|G/-|frameshift_variant;nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-5|STARD13	nc|ENSG00000133121|Q9Y3M8-5|STARD13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8074951171875	2	528.272021	1054.52949	-0.53352	-0.00028184	-2.4338	-0.0012857	-2.9673	-0.0015675	528.2697895580019	49.628	0.47627	49.628	49.473	49.949	0					23	12	3	0	0	0	0.024313	1	5189	5189		60.118	10.094	1	183120			12456	4688	8645	8662	13910	13910					0.004405448553598035
ELQTQAKAY	9	Unmodified	_ELQTQAKAY_					0	0	0		CON__P81644	CON__P81644	CON__P81644	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2642822265625	2	526.274564	1050.53457	-1.2396	-0.00065235	-0.077535	-4.0804E-05	-1.3171	-0.00069316	526.2748369602914	48.515	0.72607	48.515	48.243	48.969	0					47	19	4	0	0	0	0.024447	1	4929	4929		49.442	31.117	1	797160		+	12457	532	8646	8663	13911	13911					0.011328487179980584
ELQTWVALP	9	Unmodified	_ELQTWVALP_					0	0	0			REV__ENST00000522161.5_1_8:91057077-91057125:+|nuORF	REV__ENST00000522161.5_1_8:91057077-91057125:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7788696289062	2	528.78985	1055.56515	-0.099107	-5.2407E-05	1.6886	0.00089293	1.5895	0.00084053	528.7897410829883	86.594	1.2057	86.407	85.772	86.978	-0.18696					34	27	2	0	0	0	0.024292	1	10438	10438		40.778	0	1	243380	+		12458	34333	8647	8664	13912	13912					0.03958627103043
ELQVAATTVVC	11	Unmodified	_ELQVAATTVVC_					0	0	0			REV__DERL2|p.L26V|1|0.35|ENSG00000072849|chr17:5486086-5486086|G/C|missense_variant	REV__DERL2|p.L26V|1|0.35|ENSG00000072849|chr17:5486086-5486086|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3296508789062	2	567.297181	1132.57981	0.26339	0.00014942	-3.8601	-0.0021898	-3.5967	-0.0020404	567.2944705374273	90.709	0.42565	90.571	90.279	90.704	-0.13824					13	9	2	0	0	0	0.02475	1	11088	11088		21.686	0	1	45909	+		12459	19666	8648	8665	13913	13913					0.018823311888809258
ELQVYQKIL	9	Unmodified	_ELQVYQKIL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3301391601562	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.80735	2	11528	11433;11528		38.754	4.832	1	14057000			12460	1466	8649	8666	13914;13915	13915					0.0881915819995811
ELQYKVLISN	10	Unmodified	_ELQYKVLISN_					0	0	0		ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.2123107910156	3	402.895806	1205.66559	1.8468	0.00074408	2.6456	0.0010659	4.4924	0.00181	402.8967053937909	36.099	2.2642	36.137	35.529	37.793	0.038044					129	60	3	0	0	0	0.03519	1	2816	2816		25.068	16.268	1	918660			12461	6312	8650	8667	13916	13916					0.07098239366064263
ELQYRIKL	8	Unmodified	_ELQYRIKL_					0	0	0		nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.81640625	2	531.818941	1061.62333	0.26844	0.00014276	-4.3102	-0.0022922	-4.0418	-0.0021495	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.89627	1	10403	10403		51.335	7.2187	1	1303400			12462	18530	8651	8668	13917	13917					0.09498308748334239
ELRAAGFPL	9	Unmodified	_ELRAAGFPL_					0	0	0			REV__nc|ENSG00000150540|P50135-2|HNMT	REV__nc|ENSG00000150540|P50135-2|HNMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7979736328125	2	487.276909	972.539266	-0.29252	-0.00014254	3.7423	0.0018236	3.4498	0.001681	487.27875750824705	49.862	0.79683	49.862	49.544	50.341	0					72	22	4	0	0	0	0.024477	1	5239	5239		35.618	5.1146	1	2965400	+		12463	36780	8652	8669	13918	13918					0.0518977765142381
ELRAAGFPL	9	Unmodified	_ELRAAGFPL_					0	0	0			REV__nc|ENSG00000150540|P50135-2|HNMT	REV__nc|ENSG00000150540|P50135-2|HNMT	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.276909	972.539266	-0.000539	-2.6264E-07	10.473	0.0051033	10.473	0.005103	487.28198279990477	50.151	0.67692	50.046	49.745	50.422	-0.10558	0.058609	0.0045955	NaN	20.947	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489270	+		12464	36780	8652	8669							0.0518977765142381
ELRAAGFPL	9	Unmodified	_ELRAAGFPL_					0	0	0			REV__nc|ENSG00000150540|P50135-2|HNMT	REV__nc|ENSG00000150540|P50135-2|HNMT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.276909	972.539266	0.144	7.017E-05	10.519	0.0051256	10.663	0.0051958	487.2818818028833	50.431	0.67358	50.151	49.875	50.549	-0.27977	0.1637	0.0046401	NaN	20.947	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525230	+		12465	36780	8652	8669							0.0518977765142381
ELRAAGFPL	9	Unmodified	_ELRAAGFPL_					0	0	0			REV__nc|ENSG00000150540|P50135-2|HNMT	REV__nc|ENSG00000150540|P50135-2|HNMT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.276909	972.539266	0.56378	0.00027472	10.571	0.0051512	11.135	0.0054259	487.281573637647	50.304	0.63651	50.123	49.826	50.462	-0.18071	0.13582	0.0046914	NaN	20.947	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541640	+		12466	36780	8652	8669							0.0518977765142381
ELRASLLAR	9	Unmodified	_ELRASLLAR_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7976684570312	2	514.81419	1027.61383	-0.87783	-0.00045192	0.25754	0.00013259	-0.62029	-0.00031933	514.8140090923014	35.552	0.62511	35.596	35.343	35.968	0.04406					32	15	3	0	0	0	0.024457	1	2659	2659		15.642	4.7763	1	406380			12467	2842	8653	8670	13919	13919					0.10112540462819197
ELRASLLAR	9	Unmodified	_ELRASLLAR_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.81419	1027.61383	-0.50289	-0.00025889	0.6373	0.00032809	0.13441	6.9198E-05	514.8143822333794	35.562	0.61667	35.346	35.024	35.641	-0.21556	-0.09319	0.00026247	NaN	10.265	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171280			12468	2842	8653	8670							0.10112540462819197
ELRASLLAR	9	Unmodified	_ELRASLLAR_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.81419	1027.61383	-0.36567	-0.00018825	0.45669	0.00023511	0.091027	4.6862E-05	514.8142771774246	35.547	0.50238	35.334	35.115	35.618	-0.21246	-0.10511	7.6513E-05	NaN	10.265	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189330			12469	2842	8653	8670							0.10112540462819197
ELRASLLAR	9	Unmodified	_ELRASLLAR_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.81419	1027.61383	-0.48228	-0.00024829	0.38018	0.00019572	-0.10211	-5.2565E-05	514.8142857618728	35.462	0.46626	35.275	34.985	35.452	-0.18675	-0.16425	-2.2698E-06	NaN	10.265	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177230			12470	2842	8653	8670							0.10112540462819197
ELRDELLDS	9	Unmodified	_ELRDELLDS_					0	0	0		ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.275146484375	2	545.274761	1088.53497	-0.96677	-0.00052716	0.24479	0.00013348	-0.72198	-0.00039368	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.53979	1	9758	9758		56.721	10.264	1	52905000			12471	5006	8654	8671	13920	13920					-0.005757763527981297
ELRDKIMAT	9	Oxidation (M)	_ELRDKIM(Oxidation (M))AT_		ELRDKIM(1)AT		ELRDKIM(83)AT	0	0	1		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7894897460938	2	546.789524	1091.56449	-0.61163	-0.00033443	0.25719	0.00014063	-0.35444	-0.00019381	546.789654589198	31.016	1.0823	30.775	30.287	31.369	-0.24109					41	26	2	0	0	0	0.247	2	2029	2018;2029		82.75	24.521	1	2599000		+	12472	524;14733	8655	8672	13921;13922	13922		12			0.022374643916919013
ELRDKIMAT	9	Unmodified	_ELRDKIMAT_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7919311523438	2	538.792066	1075.56958	-0.40783	-0.00021974	-0.26905	-0.00014496	-0.67688	-0.0003647	538.7919621393576	37.643	1.1427	37.45	37.114	38.257	-0.193					79	31	4	0	0	0	0.1158	3	3034	3022;3034;3046		107.01	31.964	1	8140900		+	12473	524;14733	8655	8673	13923;13924;13925	13924					0.03481768254300732
ELRDKIMAT	9	Unmodified	_ELRDKIMAT_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.7918701171875	2	538.792066	1075.56958	-1.3033	-0.0007022	0.47223	0.00025443	-0.83106	-0.00044777	538.7923956778399	37.69	0.97348	37.471	37.114	38.087	-0.2195					69	26	4	0	0	0	0.16638	4	3033	3022;3033;3046;3059		95.815	15.811	1	8308200		+	12474	524;14733	8655	8673	13926;13927;13928;13929	13927					0.03481768254300732
ELRDKIMAT	9	Unmodified	_ELRDKIMAT_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012;ENST00000463447.5_1_17:39673213-39674704:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7919921875	2	538.792066	1075.56958	-1.8988	-0.001023	1.0614	0.00057187	-0.83737	-0.00045117	538.7926998662635	37.698	1.1454	37.48	37.144	38.289	-0.21848					79	31	4	0	0	0	0.2508	3	3016	3016;3028;3059		82.241	25.519	1	8078700		+	12475	524;14733	8655	8673	13930;13931;13932	13930					0.03481768254300732
ELREKFIL	8	Unmodified	_ELREKFIL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;ENST00000466429.5_1_6:56323805-56328761:-|nuORF;ENST00000496360.5_1_1:39934274-39950491:+|nuORF;ENST00000497807.1_1_1:39934322-39950491:+|nuORF;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000151914|ENST00000680361|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2662963867188	2	524.313492	1046.61243	0.5853	0.00030688	-0.65088	-0.00034127	-0.06558	-3.4384E-05	524.3130304189042	53.041	0.62666	52.782	52.523	53.15	-0.25838					31	15	3	0	0	0	0.027866	1	5514	5514		42.474	6.0277	1	811850			12476	4256;6240;18250;18249	8656	8674	13933	13933					0.09098906374060789
ELRELFSRAS	10	Unmodified	_ELRELFSRAS_					0	0	0			REV__nc|ENSG00000072135|Q99952-2|PTPN18	REV__nc|ENSG00000072135|Q99952-2|PTPN18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	605.2432861328125	2	604.325119	1206.63569	-0.80285	-0.00048518	3.1764	0.0019196	2.3735	0.0014344	604.3262887833034	70.145	0.37624	69.877	69.704	70.08	-0.26725					12	8	2	0	0	0	0.03519	1	8159	8159		41.427	3.6151	1	73764	+		12477	20464	8657	8675	13934	13934					0.04063300420739324
ELRETHSL	8	Unmodified	_ELRETHSL_					0	0	0		ENSG00000205078|ENST00000378644|SYCE1L	ENSG00000205078|ENST00000378644|SYCE1L	ENSG00000205078|ENST00000378644|SYCE1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3001708984375	2	492.759081	983.503609	0.0042815	2.1097E-06	-3.71	-0.0018281	-3.7057	-0.001826	492.7595983148332	92.996	0.34027	92.996	92.794	93.135	0					15	7	3	0	0	0	0.027866	1	11807	11807		55.504	2.1528	1	66981			12478	10402	8658	8676	13935	13935					0.01119695403770038
ELRGSSREY	9	Unmodified	_ELRGSSREY_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.7730712890625	2	548.772719	1095.53089	-0.4218	-0.00023147	0.98363	0.00053979	0.56184	0.00030832	548.7730867836566	35.642	1.004	35.456	35.1	36.104	-0.18675					56	27	4	0	0	0	0.51687	1	2694	2694		58.23	18.977	1	2264500	+		12479	36580	8659	8677	13936	13936					-0.013058210558483552
ELRGSSREY	9	Unmodified	_ELRGSSREY_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.772719	1095.53089	-1.2872	-0.00070639	2.916	0.0016002	1.6288	0.00089384	548.7738195407087	35.86	0.69797	35.86	35.531	36.229	0	0.23048	0.0017661	NaN	58.23	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526770	+		12480	36580	8659	8677							-0.013058210558483552
ELRGSSREY	9	Unmodified	_ELRGSSREY_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.772719	1095.53089	-1.6039	-0.00088016	3.4549	0.001896	1.851	0.0010158	548.7741047611651	35.677	0.70113	35.635	35.366	36.067	-0.042454	0.0054405	0.0023575	NaN	58.23	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543750	+		12481	36580	8659	8677							-0.013058210558483552
ELRGSSREY	9	Unmodified	_ELRGSSREY_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.772719	1095.53089	-1.0109	-0.00055475	2.8347	0.0015556	1.8238	0.0010008	548.7739537281152	35.767	0.67013	35.811	35.535	36.205	0.04406	0.18143	0.0016768	NaN	58.23	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399070	+		12482	36580	8659	8677							-0.013058210558483552
ELRGSSREY	9	Unmodified	_ELRGSSREY_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	548.772719	1095.53089	-0.31611	-0.00017347	0.86807	0.00047637	0.55195	0.0003029	548.7730576824116	35.701	0.85921	35.489	35.233	36.092	-0.21246	-0.14046	-0.00048164	NaN	58.23	47	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2966500	+		12483	36580	8659	8677							-0.013058210558483552
ELRGSSREY	9	Unmodified	_ELRGSSREY_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	548.772719	1095.53089	-0.4218	-0.00023147	0.98363	0.00053979	0.56184	0.00030832	548.7730867836566	35.642	1.004	35.456	35.1	36.104	-0.18675	-0.17348	-0.0003548	NaN	58.23	56	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2264500	+		12484	36580	8659	8677							-0.013058210558483552
ELRGTPLLP	9	Unmodified	_ELRGTPLLP_					0	0	0		ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.3031921386719	2	498.297842	994.581131	-0.36517	-0.00018196	3.7672	0.0018772	3.402	0.0016952	498.29959814207325	81.74	1.7167	81.766	81.413	83.129	0.025711					61	40	3	0	0	0	0.023817	1	10153	10153		51.335	7.2187	1	225890			12485	17509	8660	8678	13937	13937					0.0836233333996006
ELRGTPLLP	9	Unmodified	_ELRGTPLLP_					0	0	0		ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.297842	994.581131	0.23271	0.00011596	3.7254	0.0018564	3.9581	0.0019723	498.29943415680617	81.647	0.84294	81.418	81.105	81.948	-0.2289	-0.14014	-6.8739E-06	NaN	51.335	45	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729790			12486	17509	8660	8678							0.0836233333996006
ELRGTPLLP	9	Unmodified	_ELRGTPLLP_					0	0	0		ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.297842	994.581131	0.19385	9.6594E-05	3.5253	0.0017566	3.7191	0.0018532	498.2994371001099	81.548	0.79787	81.355	81.131	81.928	-0.19333	-0.20339	-0.00020633	NaN	51.335	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501370			12487	17509	8660	8678							0.0836233333996006
ELRGTPLLP	9	Unmodified	_ELRGTPLLP_					0	0	0		ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	ENST00000601106.1_1_19:19051348-19057032:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.297842	994.581131	-0.77195	-0.00038466	4.5248	0.0022547	3.7528	0.00187	498.29988438439364	81.563	0.75992	81.421	81.151	81.911	-0.14248	-0.13778	0.00078976	NaN	51.335	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432120			12488	17509	8660	8678							0.0836233333996006
ELRGVGQV	8	Unmodified	_ELRGVGQV_					0	0	0			REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF	REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7378845214844	2	429.245609	856.476666	0.19097	8.1974E-05	3.4239	0.0014697	3.6149	0.0015517	429.2457430086569	39.684	0.41648	39.684	39.391	39.808	0					16	11	2	0	0	0	0.027866	1	3439	3439		24.203	0	1	214510	+		12489	23289	8661	8679	13938	13938					0.042686315832384025
ELRHGAAP	8	Unmodified	_ELRHGAAP_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.2169189453125	2	425.730126	849.4457	-0.21608	-9.1992E-05	-2.3107	-0.00098373	-2.5268	-0.0010757	425.72895930390325	27.079	0.37633	26.911	26.723	27.099	-0.16816					10	8	2	0	0	0	0.027866	1	1444	1444		37.159	3.6435	1	45200	+		12490	27509	8662	8680	13939	13939					0.014954782689983404
ELRKERQDA	9	Unmodified	_ELRKERQDA_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2882080078125	2	572.807094	1143.59963	0.15343	8.7888E-05	-3.2548	-0.0018644	-3.1013	-0.0017765	572.8045703457581	52.91	0.47665	52.783	52.511	52.988	-0.12705					18	11	2	0	0	0	0.024457	1	5494	5494		21.96	0	1	95760			12491	4782	8663	8681	13940	13940					0.0335784324386168
ELRKEYSL	8	Unmodified	_ELRKEYSL_					0	0	0			REV__ENST00000524026.1_1_8:10692103-10697380:-|nuORF	REV__ENST00000524026.1_1_8:10692103-10697380:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.26171875	2	519.284931	1036.55531	-0.84217	-0.00043733	2.5691	0.0013341	1.7269	0.00089676	519.2845808217324	56.035	0.79628	55.879	55.499	56.295	-0.15656					37	20	3	0	0	0	0.027866	1	6074	6074		52.937	1.6012	1	336540	+		12492	34370	8664	8682	13941	13941					0.03849439097666618
ELRKGQLEV	9	Unmodified	_ELRKGQLEV_					0	0	0			REV__ENSG00000159217|ENST00000290341|IGF2BP1	REV__ENSG00000159217|ENST00000290341|IGF2BP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2608642578125	2	536.31148	1070.60841	-1.1492	-0.00061632	-3.7537	-0.0020131	-4.9029	-0.0026295	536.8116103504074	68.981	0.5768	68.72	68.466	69.043	-0.26166					20	13	2	0	0	0	0.024288	1	8014	8014		36.447	1.2947	1	348680	+		12493	25241	8665	8683	13942	13942					0.07592816880332975
ELRKKAAI	8	Unmodified	_ELRKKAAI_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.90081787109375	2	464.800552	927.58655	0.12401	5.764E-05	-0.19294	-8.968E-05	-0.068932	-3.204E-05	464.80031518979393	20.488	0.44453	20.321	20.049	20.494	-0.16774					14	8	2	0	0	0	0.027866	1	523	523		19.36	12.624	1	55965	+		12494	25697	8666	8684	13943	13943					0.11986056922410171
ELRKKHYEL	9	Unmodified	_ELRKKHYEL_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	405.89971923828125	3	405.899662	1214.67716	0.42748	0.00017351	-0.069583	-2.8244E-05	0.35789	0.00014527	405.8995629340533	23.689	1.0569	23.509	23.067	24.124	-0.17989					66	24	4	0	0	0	0.5973	1	970	970		52.937	11.51	1	1289900			12495	4267	8667	8685	13944	13944					0.07840481180028291
ELRKKHYEL	9	Unmodified	_ELRKKHYEL_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	405.8996887207031	3	405.899662	1214.67716	1.6989	0.00068957	-1.4086	-0.00057176	0.29026	0.00011782	405.8990188975929	23.723	0.89399	23.532	23.167	24.061	-0.19117					63	20	4	0	0	0	0.70156	2	961	947;961		45.972	3.108	1	1167800			12496	4267	8667	8685	13945;13946	13946					0.07840481180028291
ELRKKHYEL	9	Unmodified	_ELRKKHYEL_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	405.899662	1214.67716	0.6286	0.00025515	-0.4031	-0.00016362	0.2255	9.1529E-05	405.89943667541786	23.764	0.9944	23.562	23.195	24.19	-0.20193	0.027489	0.00037758	NaN	45.972	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1125800			12497	4267	8667	8685							0.07840481180028291
ELRKPSGSP	9	Unmodified	_ELRKPSGSP_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant;ENSG00000198824|ENST00000361283|CHAMP1	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7593994140625	2	485.769448	969.524344	-0.74476	-0.00036178	0.30379	0.00014757	-0.44097	-0.00021421	485.7694202695001	37.619	0.49025	37.619	37.379	37.869	0					32	13	3	0	0	0	0.024477	1	3059	3059		20.947	0	1	1853300			12498	262	8668	8686	13947	13947					0.03836285783438598
ELRLAVEFK	9	Unmodified	_ELRLAVEFK_					0	0	0			REV__ENSG00000173137|ENST00000308860|ADCK5	REV__ENSG00000173137|ENST00000308860|ADCK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8057861328125	2	552.824224	1103.63389	0.25834	0.00014281	-0.21	-0.00011609	0.048337	2.6722E-05	552.8237564122777	68.037	0.56235	67.803	67.595	68.158	-0.23376					20	13	2	0	0	0	0.024209	1	7873	7873		31.53	0	1	118460	+		12499	26742	8669	8687	13948	13948					0.08622291402753035
ELRLFLEL	8	Unmodified	_ELRLFLEL_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.3239135742188	2	516.808042	1031.60153	1.1705	0.00060494	-0.60388	-0.00031209	0.56666	0.00029285	516.8070179352646	63.697	0.53603	63.751	63.483	64.019	0.054104					19	14	2	0	0	0	0.027866	1	7370	7370		24.519	3.5723	1	801300			12500	9887	8670	8688	13949	13949					0.08699503999741864
ELRLGQGAPA	10	Unmodified	_ELRLGQGAPA_					0	0	0		ENST00000586222.1_3_18:13382722-13387506:+|nuORF;ENST00000590371.5_1_18:13278171-13387506:+|nuORF	ENST00000586222.1_3_18:13382722-13387506:+|nuORF	ENST00000586222.1_3_18:13382722-13387506:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2718811035156	2	506.282723	1010.55089	-1.0398	-0.00052645	0.34609	0.00017522	-0.69375	-0.00035123	506.2828034602651	31.168	0.54276	31.168	30.758	31.3	0					21	12	2	0	0	0	0.03519	1	2069	2069		30.318	6.115	1	316790			12501	17238	8671	8689	13950	13950					0.04603974674762412
ELRLKAVA	8	Unmodified	_ELRLKAVA_					0	0	0		ENST00000504300.1_1_5:79781370-79783658:-|nuORF;ENST00000508000.5_1_5:79781363-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2872009277344	2	450.287277	898.560001	0.52407	0.00023598	-0.50361	-0.00022677	0.020466	9.2158E-06	450.2869400192566	37.144	1.4072	36.951	36.455	37.862	-0.193					82	36	4	0	0	0	0.38451	1	2970	2970		99.375	5.3685	1	3523600			12502	15710	8672	8690	13951	13951					0.10666368031081674
ELRLKAVA	8	Unmodified	_ELRLKAVA_					0	0	0		ENST00000504300.1_1_5:79781370-79783658:-|nuORF;ENST00000508000.5_1_5:79781363-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2493896484375	2	450.287277	898.560001	0.27401	0.00012338	-0.36522	-0.00016445	-0.09121	-4.1071E-05	450.2870038196939	37.148	1.0999	36.939	36.445	37.545	-0.2092					77	27	4	0	0	0	0.027866	1	2959	2959		53.351	12.779	1	2968300			12503	15710	8672	8690	13952	13952					0.10666368031081674
ELRLKLTV	8	Unmodified	_ELRLKLTV_					0	0	0			REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2631530761719	2	486.316035	970.617516	-0.73027	-0.00035514	1.3332	0.00064836	0.60294	0.00029322	486.3165890820864	66.484	0.9607	66.514	66.435	67.396	0.030106					32	23	2	0	0	0	0.027866	1	7848	7848		26.693	3.6504	1	962460	+		12504	33666	8673	8691	13953	13953					0.13103210236647556
ELRLLLDCL	9	Unmodified	_ELRLLLDCL_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.3143310546875	2	544.312635	1086.61072	-0.37534	-0.0002043	3.5676	0.0019419	3.1923	0.0017376	544.3145033770026	42.139	0.8863	42.016	41.718	42.604	-0.12299					64	23	4	0	0	0	0.56934	1	3779	3779		54.776	13.998	1	2658000	+		12505	25603	8674	8692	13954	13954					0.07087529293767147
ELRLLLDCL	9	Unmodified	_ELRLLLDCL_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	544.312635	1086.61072	-0.37534	-0.0002043	3.5676	0.0019419	3.1923	0.0017376	544.3145033770026	42.139	0.8863	42.016	41.718	42.604	-0.12299	-0.073822	-0.00022065	NaN	54.776	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2658000	+		12506	25603	8674	8692							0.07087529293767147
ELRLPAVPS	9	Unmodified	_ELRLPAVPS_					0	0	0		nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4;nc|ENSG00000189013|Q99706-6|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2899169921875	2	491.290017	980.565481	0.040001	1.9652E-05	-0.036095	-1.7733E-05	0.0039053	1.9186E-06	491.289864404351	74.051	1.1911	73.78	73.499	74.69	-0.27126					57	28	3	0	0	0	0.31037	1	9027	9027		74.255	2.3776	1	5858600			12507	9780	8675	8693	13955	13955					0.07442046822893644
ELRLSLTKG	9	Unmodified	_ELRLSLTKG_					0	0	0		nc|ENSG00000163141|Q7Z465-3|BNIPL;nc|ENSG00000163141|Q7Z465-2|BNIPL;ENSG00000163141|ENST00000368931|BNIPL	nc|ENSG00000163141|Q7Z465-3|BNIPL	nc|ENSG00000163141|Q7Z465-3|BNIPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2984313964844	2	508.808574	1015.60259	-0.55449	-0.00028213	0.59305	0.00030175	0.038558	1.9619E-05	508.8086734152256	27.018	0.54874	26.85	26.594	27.142	-0.16816					18	12	2	0	0	0	0.02435	1	1423	1423		42.396	0	1	166310			12508	7042	8676	8694	13956	13956					0.09541718368666352
ELRLSLTKG	9	Unmodified	_ELRLSLTKG_					0	0	0		nc|ENSG00000163141|Q7Z465-3|BNIPL;nc|ENSG00000163141|Q7Z465-2|BNIPL;ENSG00000163141|ENST00000368931|BNIPL	nc|ENSG00000163141|Q7Z465-3|BNIPL	nc|ENSG00000163141|Q7Z465-3|BNIPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.808574	1015.60259	-0.41113	-0.00020919	0.10486	5.3354E-05	-0.30627	-0.00015583	508.8081245329683	27.189	0.37625	26.947	26.786	27.163	-0.24217	0.03074	-0.00025931	NaN	42.396	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102200			12509	7042	8676	8694							0.09541718368666352
ELRLVAMQP	9	Unmodified	_ELRLVAMQP_					0	0	0			REV__ENST00000465745.6_1_9:35089888-35090486:-|nuORF	REV__ENST00000465745.6_1_9:35089888-35090486:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2745971679688	2	528.797152	1055.57975	-0.07192	-3.8031E-05	4.1948	0.0022182	4.1229	0.0021802	528.7992808610446	47.452	0.61683	47.299	47.052	47.669	-0.15301					36	17	4	0	0	0	0.024344	1	4726	4726		45.972	3.108	1	954950	+		12510	33014	8677	8695	13957	13957					0.05418375979547818
ELRLVGGSSR	10	Unmodified	_ELRLVGGSSR_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.31689453125	2	537.306729	1072.59891	-0.1306	-7.0174E-05	4.3296	0.0023263	4.199	0.0022561	537.3089289038403	20.819	0.63056	20.652	20.395	21.025	-0.16774					35	12	4	0	0	0	0.03519	1	619	619		23.523	0	1	204950			12511	8761	8678	8696	13958	13958					0.06551048594815256
ELRMLDLSL	9	Unmodified	_ELRMLDLSL_					0	0	0			REV__ENST00000481948.1_1_16:88104968-88110264:+|nuORF	REV__ENST00000481948.1_1_16:88104968-88110264:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2759399414062	2	545.302267	1088.58998	-1.15	-0.00062708	-3.864	-0.002107	-5.014	-0.0027341	545.3010453852087	75.761	1.3813	75.761	75.378	76.759	0					47	35	2	0	0	0	0.024313	1	9410	9410		42.864	1.4377	1	256230	+		12512	33470	8679	8697	13959	13959					0.04922938914137376
ELRNKNKLH	9	Unmodified	_ELRNKNKLH_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__UBE3C-PTPRN2|1|fusion	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.3357543945312	2	576.335821	1150.65709	-0.17055	-9.8293E-05	0.17988	0.00010367	0.0093348	5.38E-06	576.3358277223913	18.424	0.44607	18.221	18.014	18.46	-0.20371					23	8	4	0	0	0	0.62163	1	286	286		51.335	10.557	1	301860	+		12513	24992;37751	8680	8698	13960	13960					0.08778730240078403
ELRNLGLYV	9	Unmodified	_ELRNLGLYV_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7991943359375	2	538.808574	1075.60259	0.279	0.00015033	0.32567	0.00017547	0.60467	0.0003258	538.8080140427555	70.572	0.63249	70.572	70.355	70.987	0					23	14	2	0	0	0	0.024495	1	8504	8504		42.396	6.7778	1	165180			12514	1911	8681	8699	13961	13961					0.06781718368665679
ELRPFSLVL	9	Unmodified	_ELRPFSLVL_					0	0	0		ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENST00000462494.5_1_7:5568599-5569288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2608642578125	2	537.321317	1072.62808	-1.1453	-0.00061542	-2.174	-0.0011681	-3.3193	-0.0017836	537.3195492018392	69.018	0.57668	68.756	68.507	69.084	-0.26166					24	13	3	0	0	0	0.024025	1	8014	8014		44.377	1.981	1	316600			12515	14709	8682	8700	13962	13962					0.09467192891088416
ELRPKSDEGSV	11	Unmodified	_ELRPKSDEGSV_					0	0	0		nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR	nc|ENSG00000168453|O43593-2|HR	nc|ENSG00000168453|O43593-2|HR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.21099853515625	3	406.210453	1215.60953	0.1269	5.1546E-05	1.1091	0.00045052	1.236	0.00050207	406.21084739141935	27.384	0.97518	27.142	26.869	27.845	-0.24217					56	22	4	0	0	0	0.96309	1	1520	1520		45.022	7.4223	1	1456300			12516	7827	8683	8701	13963	13963					0.010349864585805335
ELRPLLLLV	9	Unmodified	_ELRPLLLLV_					0	0	0			REV__ENST00000555658.5_1_14:89730286-89817056:-|nuORF	REV__ENST00000555658.5_1_14:89730286-89817056:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7138671875	2	533.35516	1064.69577	-0.039613	-2.1128E-05	-0.39847	-0.00021253	-0.43808	-0.00023365	533.3549108566979	86.304	0.48168	86.117	85.859	86.341	-0.18696					15	10	2	0	0	0	0.024541	1	10443	10443		12.207	0	1	49420	+		12517	35013	8684	8702	13964	13964					0.16600642821890688
ELRPSGLL	8	Unmodified	_ELRPSGLL_					0	0	0			REV__nc|ENSG00000104814|Q92918|MAP4K1	REV__nc|ENSG00000104814|Q92918|MAP4K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.787841796875	2	442.763635	883.512717	-0.36454	-0.00016141	0.67673	0.00029963	0.31219	0.00013823	442.7638277023185	42.928	0.46416	42.691	42.525	42.989	-0.23736					17	11	2	0	0	0	0.027866	1	3917	3917		19.36	6.4008	1	166230	+		12518	36532	8685	8703	13965	13965					0.06630088760107355
ELRPSGLL	8	Unmodified	_ELRPSGLL_					0	0	0			REV__nc|ENSG00000104814|Q92918|MAP4K1	REV__nc|ENSG00000104814|Q92918|MAP4K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.763635	883.512717	0.37987	0.00016819	0.012917	5.719E-06	0.39278	0.00017391	442.76333825822195	42.317	0.51428	42.317	42.02	42.534	0	-0.15212	-0.0004944	NaN	19.36	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219770	+		12519	36532	8685	8703							0.06630088760107355
ELRPSGLL	8	Unmodified	_ELRPSGLL_					0	0	0			REV__nc|ENSG00000104814|Q92918|MAP4K1	REV__nc|ENSG00000104814|Q92918|MAP4K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.763635	883.512717	0.093086	4.1215E-05	0.56365	0.00024956	0.65673	0.00029078	442.76356616001556	42.355	0.44205	42.223	42.049	42.491	-0.13219	-0.24654	-6.7132E-06	NaN	19.36	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206060	+		12520	36532	8685	8703							0.06630088760107355
ELRPSGLL	8	Unmodified	_ELRPSGLL_					0	0	0			REV__nc|ENSG00000104814|Q92918|MAP4K1	REV__nc|ENSG00000104814|Q92918|MAP4K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	442.763635	883.512717	0.028026	1.2409E-05	0.34475	0.00015264	0.37278	0.00016505	442.76351728549065	42.331	0.41382	42.357	42.152	42.566	0.026012	-0.1122	-0.00020055	NaN	19.36	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206420	+		12521	36532	8685	8703							0.06630088760107355
ELRQKKKEL	9	Unmodified	_ELRQKKKEL_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant;ENST00000534576.1_1_8:13880333-13880591:-|nuORF	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.3615112304688	2	586.361505	1170.70846	-0.86077	-0.00050472	0.88751	0.0005204	0.026741	1.568E-05	586.3618378036657	17.948	0.39771	17.742	17.514	17.912	-0.20669					17	7	3	0	0	0	0.35646	1	239	239		68.787	2.3575	1	185690			12522	10237	8686	8704	13966	13966					0.12993054214166477
ELRQKKKEL	9	Unmodified	_ELRQKKKEL_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant;ENST00000534576.1_1_8:13880333-13880591:-|nuORF	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	586.361505	1170.70846	0.73019	0.00042815	-0.90722	-0.00053196	-0.17703	-0.00010381	586.3608731288323	17.935	0.44537	17.781	17.607	18.052	-0.15403	0.022646	2.4857E-05	NaN	68.787	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175440			12523	10237	8686	8704							0.12993054214166477
ELRQLLASLP	10	Unmodified	_ELRQLLASLP_					0	0	0		ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.3326416015625	2	570.342781	1138.67101	0.20324	0.00011591	-3.6202	-0.0020648	-3.417	-0.0019488	570.3401891936553	101.35	0.27706	101.18	101.01	101.28	-0.17178					7	5	2	0	0	0	0.03519	1	12570	12570		17.468	8.2851	1	22261			12524	3919	8687	8705	13967	13967					0.10721962948514374
ELRRDRLA	8	Unmodified	_ELRRDRLA_					0	0	0			REV__nc|ENSG00000188157|O00468-4|AGRN	REV__nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7740478515625	2	514.801614	1027.58868	-0.03522	-1.8131E-05	3.6871	0.0018981	3.6519	0.00188	514.8027830450173	68.976	0.49443	68.745	68.559	69.054	-0.23048					18	11	2	0	0	0	0.027866	1	7975	7975		37.159	9.2769	1	237090	+		12525	37039	8688	8706	13968	13968					0.0759848566024175
ELRRKIREL	9	Unmodified	_ELRRKIREL_					0	0	0		ENSG00000184515|ENST00000333643|BEX5	ENSG00000184515|ENST00000333643|BEX5	ENSG00000184515|ENST00000333643|BEX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.92279052734375	3	404.922689	1211.74624	0.50474	0.00020438	-0.80421	-0.00032564	-0.29947	-0.00012126	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	0.93097	1	1408	1408		30.318	0	1	35253000			12526	9346	8689	8707	13969	13969					0.14883565199602344
ELRRLLTF	8	Unmodified	_ELRRLLTF_					0	0	0		ENSG00000166153|ENST00000550587|DEPDC4;ENST00000416321.5_1_12:100646057-100649830:-|nuORF;ENST00000378244.6_1_12:100636296-100649830:-|nuORF	ENSG00000166153|ENST00000550587|DEPDC4	ENSG00000166153|ENST00000550587|DEPDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.7819213867188	2	524.319109	1046.62366	-1.2783	-0.00067023	1.2104	0.00063461	-0.067926	-3.5615E-05	524.3196376017842	27.837	0.6051	27.837	27.508	28.113	0					23	15	2	0	0	0	0.027866	1	1605	1605		38.806	12.01	1	102570			12527	7511	8690	8708	13970	13970					0.10221728468172842
ELRRQQEEI	9	Unmodified	_ELRRQQEEI_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.53912353515625	3	400.882559	1199.62585	0.092614	3.7127E-05	-1.5269	-0.00061212	-1.4343	-0.00057499	400.8815611712592	25.851	0.48095	25.615	25.467	25.948	-0.23603					18	11	2	0	0	0	0.0242	1	1265	1265		51.193	1.6567	1	106030			12528	10301	8691	8709	13971	13971					0.03402112415346892
ELRRQYQRES	10	Unmodified	_ELRRQYQRES_					0	0	0			REV__ENSG00000168273|ENST00000477703|UQCC5	REV__ENSG00000168273|ENST00000477703|UQCC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2694091796875	3	455.572496	1363.69566	0.035394	1.6124E-05	-2.5674	-0.0011696	-2.532	-0.0011535	455.57124879765996	45.417	0.39993	45.461	45.214	45.614	0.04388					18	11	2	0	0	0	0.03519	1	4314	4314		47.228	15.194	1	100260	+		12529	26242	8692	8710	13972	13972					0.028359910839753866
ELRRRREIAER	11	Unmodified	_ELRRRREIAER_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;nc|ENSG00000137776|Q9NWH9-3|SLTM	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2917175292969	3	495.290323	1482.84914	2.6443	0.0013097	-0.16561	-8.2024E-05	2.4787	0.0012277	495.2901667118732	18.67	0.944	18.428	18.074	19.018	-0.24256					50	18	4	0	0	0	1.0621	1	311	311		21.78	3.2494	1	162770			12530	5153	8693	8711	13973	13973					0.12703025920245636
ELRRSEAGL	9	Unmodified	_ELRRSEAGL_					0	0	0			REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF	REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2684936523438	2	515.78563	1029.55671	0.0024734	1.2758E-06	1.4816	0.00076417	1.484	0.00076545	515.7875250612326	49.142	1.0482	49.142	48.83	49.878	0					72	28	4	0	0	0	0.024288	1	5047	5047		44.377	0	1	14974000	+		12531	29950	8694	8712	13974	13974					0.04311073186431713
ELRRSTMK	8	Unmodified	_ELRRSTMK_					0	0	0			REV__nc|ENSG00000157423|Q4G0P3-10|HYDIN	REV__nc|ENSG00000157423|Q4G0P3-10|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.7801513671875	2	510.784576	1019.5546	-0.38042	-0.00019431	0.78305	0.00039997	0.40262	0.00020565	510.78364064639106	93.076	0.76217	93.084	92.801	93.564	0.0077209					24	17	2	0	0	0	0.027866	1	11719	11719		40.778	7.2626	1	70126	+		12532	36812	8695	8713	13975	13975					0.04560321176973048
ELRRVGSP	8	Unmodified	_ELRRVGSP_					0	0	0			REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	REV__nc|ENSG00000071246|Q7L8A9-2|VASH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.26495361328125	2	457.264333	912.514114	0.3229	0.00014765	0.74381	0.00034012	1.0667	0.00048777	457.2642715497568	94.329	1.9745	94.207	93.754	95.729	-0.12215					93	45	3	0	0	0	0.93274	1	11628	11628		47.916	1.9636	1	1315300	+		12533	20448	8696	8714	13976	13976					0.05435722848869773
ELRSEESSKP	10	Unmodified	_ELRSEESSKP_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.2666625976562	2	581.290942	1160.56733	-0.24661	-0.00014335	2.4282	0.0014115	2.1816	0.0012682	581.2923997672896	61.969	0.55077	61.756	61.501	62.052	-0.21375					14	13	2	0	0	0	0.03519	1	6955	6955		11.636	0	1	158880			12534	767	8697	8715	13977	13977					-0.00652988949786959
ELRSFRNAA	9	Unmodified	_ELRSFRNAA_					0	0	0		ENSG00000112333|ENST00000368986|NR2E1;nc|ENSG00000112333|Q9Y466-2|NR2E1	ENSG00000112333|ENST00000368986|NR2E1	ENSG00000112333|ENST00000368986|NR2E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.796630859375	2	532.285797	1062.55704	-0.76989	-0.0004098	-4.1899	-0.0022302	-4.9598	-0.00264	532.2835592851012	93.622	0.4142	93.628	93.476	93.89	0.0059891					19	9	3	0	0	0	0.024436	1	11843	11843		30.504	6.3009	1	107520			12535	3202	8698	8716	13978	13978					0.02826492906274325
ELRSLDANH	9	Unmodified	_ELRSLDANH_					0	0	0			REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3115234375	2	527.767437	1053.52032	-0.72831	-0.00038438	0.66148	0.00034911	-0.066832	-3.5272E-05	527.7673113390746	20.512	0.53633	20.408	20.079	20.616	-0.10477					22	10	3	0	0	0	0.024319	1	545	545		47.657	0	1	29853	+		12536	24760	8699	8717	13979	13979					-0.004298037102898888
ELRSPRTLHL	10	Unmodified	_ELRSPRTLHL_					0	0	0			REV__nc|ENSG00000166507|P52849-2|NDST2	REV__nc|ENSG00000166507|P52849-2|NDST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.8573608398438	2	611.356754	1220.69895	-0.19635	-0.00012004	-1.1472	-0.00070135	-1.3436	-0.00082139	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	0.94316	1	11462	11462		51.193	6.8155	1	5237500	+		12537	36889	8700	8718	13980	13980					0.09743285928607293
ELRSSLRGL	9	Unmodified	_ELRSSLRGL_					0	0	0		ENSG00000137824|ENST00000338376|RMDN3	ENSG00000137824|ENST00000338376|RMDN3	ENSG00000137824|ENST00000338376|RMDN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7716674804688	2	515.803823	1029.59309	-1.1149	-0.00057505	1.0325	0.00053258	-0.082321	-4.2462E-05	515.8042152689046	25.109	0.37847	25.075	24.86	25.238	-0.034397					14	8	2	0	0	0	0.024374	1	1135	1135		32.812	0	1	118980			12538	5164	8701	8719	13981	13981					0.07947950083143951
ELRSYAESQ	9	Unmodified	_ELRSYAESQ_					0	0	0		SCRN1|p.Q209E|1|0.1|ENSG00000136193|chr7:29940796-29940796|G/C|missense_variant	SCRN1|p.Q209E|1|0.1|ENSG00000136193|chr7:29940796-29940796|G/C|missense_variant	SCRN1|p.Q209E|1|0.1|ENSG00000136193|chr7:29940796-29940796|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3116455078125	2	541.759278	1081.504	0.23211	0.00012575	-0.70735	-0.00038321	-0.47524	-0.00025747	541.7579912812777	40.602	0.49813	40.483	40.376	40.874	-0.11863					19	13	2	0	0	0	0.024344	1	3592	3592		45.972	0	1	194910			12539	37864	8702	8720	13982	13982					-0.033489296670495605
ELRTIVHDL	9	Unmodified	_ELRTIVHDL_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2696533203125	2	548.31148	1094.60841	-0.77633	-0.00042567	1.0555	0.00057875	0.27918	0.00015308	548.3119267712731	38.746	0.63728	38.524	38.221	38.858	-0.22149					34	16	3	0	0	0	0.024447	1	3257	3257		19.104	0	1	316700			12540	2480;18139	8703	8721	13983	13983					0.06488816880346349
ELRVKDSLLRK	11	Unmodified	_ELRVKDSLLRK_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion;ENST00000556340.1_1_9:139265151-139266545:-|nuORF;nc|ENSG00000289701|Q9H257-3|CARD9;ENSG00000187796|ENST00000371732|CARD9;NOTCH1-CARD9|2|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.94818115234375	3	452.948904	1355.82488	1.0628	0.00048139	-1.8316	-0.00082962	-0.7688	-0.00034823	452.94795921706185	106.19	0.77414	106.19	105.9	106.68	0					72	28	4	0	0	0	1.0501	1	13619	13619		25.068	3.2874	1	1126400			12541	18824	8704	8722	13984	13984					0.1612037271402187
ELRVNYHLV	9	Unmodified	_ELRVNYHLV_					0	0	0		ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	572.2969360351562	2	571.819473	1141.62439	-0.31277	-0.00017885	-3.1846	-0.001821	-3.4974	-0.0019999	571.8177295267966	65.592	0.97249	65.32	64.979	65.951	-0.27283					38	26	2	0	0	0	0.024436	1	7693	7693		30.504	0	1	1296600			12542	8697	8705	8723	13985	13985					0.059245231172326385
ELRVRILV	8	Unmodified	_ELRVRILV_					0	0	0			REV__ENSG00000130304|ENST00000252595|SLC27A1	REV__ENSG00000130304|ENST00000252595|SLC27A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.20782470703125	2	499.329476	996.6444	-0.47198	-0.00023567	0.043194	2.1568E-05	-0.42879	-0.00021411	499.3294609778513	42.267	0.69124	42.035	41.803	42.494	-0.23186					31	18	2	0	0	0	0.027866	1	3759	3759		21.702	0	1	365840	+		12543	23102	8706	8724	13986	13986					0.14594318847855448
ELRVTLSNALL	11	Unmodified	_ELRVTLSNALL_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.886474609375	3	410.246839	1227.71869	0.054654	2.2421E-05	-3.4832	-0.001429	-3.4286	-0.0014066	410.5790560458257	34.542	0.24023	34.593	34.441	34.682	0.050251					6	5	2	0	0	0	0.024792	1	2524	2524		41.08	3.5719	1	50014	+		12544	19879	8707	8725	13987	13987					0.11393617148723933
ELRYLPLN	8	Unmodified	_ELRYLPLN_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2923889160156	2	509.290017	1016.56548	0.54301	0.00027655	-1.0111	-0.00051493	-0.46806	-0.00023838	509.28948682255475	50.959	0.57283	50.779	50.61	51.182	-0.18071					34	14	3	0	0	0	0.027866	1	5188	5188		21.96	4.5949	1	1333900			12545	4379	8708	8726	13988	13988					0.057860468229023354
ELSDAILEGY	10	Unmodified	_ELSDAILEGY_					0	0	0		nc|ENSG00000131470|Q9P2W1-3|PSMC3IP;nc|ENSG00000131470|Q9P2W1-2|PSMC3IP;ENSG00000131470|ENST00000393795|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.8056030273438	2	555.271687	1108.52882	-0.30497	-0.00016934	2.358	0.0013093	2.053	0.00114	555.2726120772036	33.165	0.6867	32.934	32.752	33.439	-0.23107					17	16	2	0	0	0	0.03519	1	2366	2366		34.173	12.213	1	141190			12546	4529	8709	8727	13989	13989					-0.021102945843267662
ELSDQMIFMER	11	Unmodified	_ELSDQMIFMER_					0	0	0		ENSG00000197888|ENST00000317746|UGT2B17;ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000197888|ENST00000317746|UGT2B17	ENSG00000197888|ENST00000317746|UGT2B17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.7314758300781	3	466.884584	1397.63192	-0.22416	-0.00010466	0.0052033	2.4293E-06	-0.21895	-0.00010223	467.218990377109	60.54	0.4088	60.334	60.172	60.581	-0.20599					16	9	2	0	0	0	0.024789	1	6716	6716		26.75	8.2187	1	152500			12547	9903	8710	8728	13990	13990					-0.05098873459655806
ELSDRLLLL	9	Unmodified	_ELSDRLLLL_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7295532226562	2	536.324057	1070.63356	-0.4164	-0.00022333	-0.73442	-0.00039389	-1.1508	-0.00061721	536.322928568466	59.606	0.71311	59.357	59.01	59.723	-0.24842					55	17	5	0	0	0	0.024506	1	6636	6636		23.042	3.939	1	1288100	+		12548	20797	8711	8729	13991	13991					0.10106871682910423
ELSDRLLLL	9	Unmodified	_ELSDRLLLL_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.324057	1070.63356	0.20885	0.00011201	-2.4617	-0.0013203	-2.2528	-0.0012082	536.322767145823	59.489	0.5926	59.31	59.033	59.626	-0.17976	-0.027795	-0.00034596	NaN	23.042	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1419700	+		12549	20797	8711	8729							0.10106871682910423
ELSDVLIYL	9	Unmodified	_ELSDVLIYL_					0	0	0		ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7968139648438	2	532.79734	1063.58013	-0.41765	-0.00022252	0.63832	0.00034009	0.22066	0.00011757	532.7973647286237	100.63	1.3968	100.63	100.07	101.46	0					58	32	3	0	0	0	0.36105	2	12866	12854;12866		68.485	7.9919	1	1217100			12550	8949	8712	8730	13992;13993	13993					0.05088074180366675
ELSDVLIYL	9	Unmodified	_ELSDVLIYL_					0	0	0		ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7978515625	2	532.79734	1063.58013	-0.51449	-0.00027412	0.10032	5.345E-05	-0.41417	-0.00022067	532.7973521750105	100.6	0.70805	100.61	100.21	100.92	0.010117					39	16	3	0	0	0	0.29104	3	12818	12818;12827;12835		76.847	21.342	1	973720			12551	8949	8712	8730	13994;13995;13996	13994					0.05088074180366675
ELSDVLIYL	9	Unmodified	_ELSDVLIYL_					0	0	0		ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7978515625	2	532.79734	1063.58013	-0.045357	-2.4166E-05	0.045125	2.4042E-05	-0.00023249	-1.2387E-07	532.797169869545	100.63	0.68692	100.62	100.25	100.93	-0.0054474					36	16	3	0	0	0	0.40179	1	12796	12796		65.803	10.299	1	1041100			12552	8949	8712	8730	13997	13997					0.05088074180366675
ELSDVLIYL	9	Unmodified	_ELSDVLIYL_					0	0	0		ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.79734	1063.58013	0.34243	0.00018245	-1.0072	-0.00053662	-0.66474	-0.00035417	532.7965915157491	100.57	0.80809	100.44	100.23	101.04	-0.13364	-0.12531	-0.00098992	NaN	76.847	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199240			12553	8949	8712	8730							0.05088074180366675
ELSDVLIYL	9	Unmodified	_ELSDVLIYL_					0	0	0		ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	ENSG00000179958|ENST00000319285|DCTPP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.79734	1063.58013	0.11101	5.9147E-05	-0.48979	-0.00026096	-0.37878	-0.00020181	532.7966956675031	100.64	0.91549	100.52	100.2	101.11	-0.12504	-0.046776	-0.0004386	NaN	76.847	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229300			12554	8949	8712	8730							0.05088074180366675
ELSEKLGIL	9	Unmodified	_ELSEKLGIL_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7775573730469	2	501.297507	1000.58046	0.50223	0.00025177	-2.1507	-0.0010781	-1.6485	-0.00082638	501.2968125840269	72.003	0.4877	72.003	71.566	72.054	0					28	12	4	0	0	0	0.023817	1	8698	8698		60.972	16.595	1	1205100			12555	14444	8713	8731	13998	13998					0.08019493900246744
ELSEPLQP	8	Unmodified	_ELSEPLQP_					0	0	0			REV__ENSG00000006194|ENST00000219069|ZNF263	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2583312988281	2	456.737283	911.460012	-0.30407	-0.00013888	0.54753	0.00025008	0.24346	0.0001112	456.7374419877971	60.95	1.1978	60.737	60.31	61.508	-0.21339					46	31	2	0	0	0	0.027866	1	7116	7116		73.975	0	1	298020	+		12556	19826	8714	8732	13999	13999					0.0007408590662407732
ELSEPRILAR	10	Unmodified	_ELSEPRILAR_					0	0	0		ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	592.86962890625	2	592.343312	1182.67207	-1.7876	-0.0010589	-4.4686	-0.0026469	-6.2562	-0.0037058	592.3405640660588	102.79	0.43115	102.79	102.57	103	0					19	10	3	0	0	0	0.03519	1	13186	13186		23.523	0	1	159400			12557	8082	8715	8733	14000	14000					0.08804177317438189
ELSEVLKARHK	11	Unmodified	_ELSEVLKARHK_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.25726318359375	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	0.99147	1	12033	12033		38.714	4.6276	1	1104700			12558	5759	8716	8734	14001	14001					0.10935824271541605
ELSGGRLKP	9	Unmodified	_ELSGGRLKP_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7693786621094	2	478.779816	955.545079	-0.48511	-0.00023226	0.19698	9.431E-05	-0.28813	-0.00013795	478.7796967825415	52.168	0.88066	52.26	51.684	52.565	0.091938					35	22	2	0	0	0	0.022882	1	5420	5420		75.043	0	1	377770			12559	3408	8717	8735	14002	14002					0.06552876163095789
ELSHLFNSV	9	Unmodified	_ELSHLFNSV_					0	0	0			REV__ENSG00000278540|ENST00000616317|ACACA	REV__ENSG00000278540|ENST00000616317|ACACA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3084106445312	2	523.269281	1044.52401	-0.51042	-0.00026708	1.2482	0.00065312	0.73774	0.00038604	523.2698171456123	31.131	0.55087	31.142	30.831	31.382	0.011797					20	12	2	0	0	0	0.024427	1	2031	2031		42.396	16.946	1	206870	+		12560	29218	8718	8736	14003	14003					0.0035286606357658457
ELSHLLTLV	9	Unmodified	_ELSHLLTLV_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8067626953125	2	512.8055	1023.59645	0.87362	0.000448	-0.7626	-0.00039106	0.11103	5.6935E-05	512.8050948019152	71.036	0.69397	70.743	70.455	71.149	-0.29291					52	16	4	0	0	0	0.40179	2	8572	8546;8572		65.803	9.6365	1	1283800			12561	9948	8719	8737	14004;14005	14005					0.08559200137153766
ELSIFTESDA	10	Unmodified	_ELSIFTESDA_					0	0	0			REV__ENSG00000167196|ENST00000308275|FBXO22	REV__ENSG00000167196|ENST00000308275|FBXO22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.8057861328125	2	556.261319	1110.50808	-1.028	-0.00057184	1.1247	0.00062564	0.096722	5.3802E-05	556.2612749284772	33.246	0.67902	33.081	32.8	33.479	-0.16565					20	16	2	0	0	0	0.03519	1	2323	2323		56.721	31.271	1	84875	+		12562	26117	8720	8738	14006	14006					-0.04274884963979275
ELSISGLKM	9	Unmodified	_ELSISGLKM_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.77880859375	2	489.270435	976.526318	-0.29214	-0.00014294	-2.7938	-0.0013669	-3.086	-0.0015099	489.26894773837586	85.64	2.352	85.583	84.402	86.754	-0.05761					71	55	2	0	0	0	0.024477	1	10822	10822		35.618	0	1	1027400	+		12563	27801	8721	8739	14007	14007					0.037115784770321625
ELSKLFPLS	9	Unmodified	_ELSKLFPLS_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7993774414062	2	517.30005	1032.58555	-0.19019	-9.8385E-05	-2.7125	-0.0014032	-2.9027	-0.0015016	517.7996915430062	107.45	0.5746	107.33	106.81	107.38	-0.1238					24	19	2	0	0	0	0.77768	1	13363	13363		40.778	2.0246	1	118270	+		12564	19801	8722	8740	14008	14008					0.07055797762859584
ELSKLFPLS	9	Unmodified	_ELSKLFPLS_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.30005	1032.58555	0.020609	1.0661E-05	-0.35836	-0.00018538	-0.33775	-0.00017472	517.3006315609342	107.38	0.96648	107.38	106.47	107.44	-0.003479	0.039692	0.0007888	NaN	40.778	46	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57261	+		12565	19801	8722	8740							0.07055797762859584
ELSKLFPLS	9	Unmodified	_ELSKLFPLS_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.30005	1032.58555	-0.44702	-0.00023124	-0.69665	-0.00036038	-1.1437	-0.00059162	517.3008366755746	107.31	0.65983	107.31	106.81	107.47	0.0018311	-0.031021	0.00043881	NaN	40.778	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55209	+		12566	19801	8722	8740							0.07055797762859584
ELSKLFPLS	9	Unmodified	_ELSKLFPLS_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	517.30005	1032.58555	-0.19019	-9.8385E-05	-2.7125	-0.0014032	-2.9027	-0.0015016	517.7996915430062	107.45	0.5746	107.33	106.81	107.38	-0.1238	-0.0086713	-0.0016468	NaN	40.778	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118270	+		12567	19801	8722	8740							0.07055797762859584
ELSKLVPPE	9	Unmodified	_ELSKLVPPE_					0	0	0		PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3009338378906	2	506.289682	1010.56481	-1.0639	-0.00053866	-1.5352	-0.00077724	-2.5991	-0.0013159	506.2888508514236	25.238	0.652	25.204	24.904	25.556	-0.034395					34	15	3	0	0	0	0.024457	1	1130	1130		29.15	0	1	548470			12568	19003	8723	8741	14009	14009					0.059952073831937014
ELSKMTQP	8	Unmodified	_ELSKMTQP_					0	0	0			REV__ENST00000338820.7_1_10:74094348-74094468:-|nuORF	REV__ENST00000338820.7_1_10:74094348-74094468:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7313537597656	2	467.239135	932.463718	0.83701	0.00039108	-0.46843	-0.00021887	0.36858	0.00017222	467.23876276472726	59.314	0.99955	59.4	59.134	60.134	0.085686					37	26	3	0	0	0	0.027866	1	6784	6784		56.721	5.3856	1	341040	+		12569	30596	8724	8742	14010	14010					-0.005215675911699691
ELSLKKLI	8	Unmodified	_ELSLKKLI_					0	0	0			REV__ENSG00000165138|ENST00000353234|ANKS6	REV__ENSG00000165138|ENST00000353234|ANKS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7666931152344	2	472.312961	942.611368	0.46129	0.00021787	-0.70565	-0.00033329	-0.24436	-0.00011541	472.3125723165712	70.987	0.81914	70.998	70.725	71.544	0.010735					43	20	3	0	0	0	0.027866	1	8553	8553		33.516	9.3128	1	570200	+		12570	25844	8725	8743	14011	14011					0.13776692005137647
ELSLKTLL	8	Unmodified	_ELSLKTLL_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-2|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-2|ODF2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2767333984375	2	458.789318	915.564084	-0.3482	-0.00015975	-4.2784	-0.0019629	-4.6267	-0.0021227	458.78731010977094	92.159	2.2616	92.159	91.383	93.645	0					168	53	6	0	0	0	0.027866	1	11592	11592		18.324	0	1	28740000	+		12571	36622	8726	8744	14012	14012					0.10292412734145273
ELSLNKLFD	9	Unmodified	_ELSLNKLFD_					0	0	0			REV__ENSG00000104375|ENST00000419617|STK3	REV__ENSG00000104375|ENST00000419617|STK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.8029174804688	2	539.792589	1077.57063	-0.98147	-0.00052979	1.2002	0.00064787	0.21876	0.00011808	539.7932282505774	93.254	1.1639	93.262	92.929	94.093	0.0077286					49	27	2	0	0	0	0.020546	1	11856	11856		96.19	0	1	330720	+		12572	21442	8727	8745	14013	14013					0.0349430589487838
ELSLRGMTK	9	Unmodified	_ELSLRGMTK_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2713012695312	2	517.786784	1033.55902	-1.4557	-0.00075375	-3.5899	-0.0018588	-5.0456	-0.0026125	517.7846145405763	28.599	0.50272	28.354	28.162	28.665	-0.24524					24	11	3	0	0	0	0.024397	1	1673	1673		18.262	0	1	449580	+		12573	23335	8728	8746	14014	14014					0.043577855998591986
ELSNNTARLA	10	Unmodified	_ELSNNTARLA_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.791015625	2	544.78837	1087.56219	0.2611	0.00014224	3.0044	0.0016368	3.2655	0.001779	544.7898935213664	59.088	1.5345	59.088	58.531	60.066	0					108	41	5	0	0	0	0.55353	1	6728	6728		82.241	0	1	9057000	+		12574	21934	8729	8747	14015	14015					0.021907519782416784
ELSNVGLLI	9	Unmodified	_ELSNVGLLI_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7693786621094	2	479.2844	956.554247	-0.97734	-0.00046843	-2.4051	-0.0011527	-3.3824	-0.0016211	479.28535853015137	51.678	0.20737	51.765	51.61	51.818	0.087006					6	5	2	0	0	0	0.023181	1	5420	5420		71.296	0	1	70560			12575	8590	8730	8748	14016	14016					0.07423224728779587
ELSPAEEEAL	10	Unmodified	_ELSPAEEEAL_					0	0	0		nc|ENSG00000241935|Q86XE5-3|HOGA1;ENSG00000241935|ENST00000370646|HOGA1	nc|ENSG00000241935|Q86XE5-3|HOGA1	nc|ENSG00000241935|Q86XE5-3|HOGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7901000976562	2	544.261319	1086.50808	-0.49295	-0.00026829	2.1164	0.0011519	1.6234	0.00088358	544.261971124223	59.309	0.22298	59.395	59.241	59.464	0.085686					6	5	2	0	0	0	0.03519	1	6666	6666		66.429	4.3219	1	35057			12576	10787	8731	8749	14017	14017					-0.031708849639926484
ELSPCRAEPGY	11	Unmodified	_ELSPCRAEPGY_					0	0	0			REV__ENST00000556095.5_1_14:96830416-96830617:+|nuORF	REV__ENST00000556095.5_1_14:96830416-96830617:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	611.7386474609375	2	611.282063	1220.54957	-0.59467	-0.00036351	3.8943	0.0023805	3.2996	0.002017	611.2838755315152	63.083	0.6012	62.9	62.671	63.272	-0.18386					33	14	4	0	0	0	0.024736	1	7088	7088		16.717	0	1	862800	+		12577	35024	8732	8750	14018	14018					-0.05188027476310708
ELSPEKLPE	9	Unmodified	_ELSPEKLPE_					0	0	0		AAGAB|p.E145K|1|0.15|ENSG00000103591|chr15:67235997-67235997|C/T|missense_variant	AAGAB|p.E145K|1|0.15|ENSG00000103591|chr15:67235997-67235997|C/T|missense_variant	AAGAB|p.E145K|1|0.15|ENSG00000103591|chr15:67235997-67235997|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8123779296875	2	521.276772	1040.53899	-0.25333	-0.00013205	2.6536	0.0013833	2.4003	0.0012512	521.7801026205578	57.029	0.48439	56.865	56.675	57.16	-0.16431					22	13	2	0	0	0	0.024484	1	6340	6340		30.318	12.953	1	662920			12578	1	8733	8751	14019	14019					0.02034313140939048
ELSPEKLPE	9	Unmodified	_ELSPEKLPE_					0	0	0		AAGAB|p.E145K|1|0.15|ENSG00000103591|chr15:67235997-67235997|C/T|missense_variant	AAGAB|p.E145K|1|0.15|ENSG00000103591|chr15:67235997-67235997|C/T|missense_variant	AAGAB|p.E145K|1|0.15|ENSG00000103591|chr15:67235997-67235997|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.276772	1040.53899	-0.3915	-0.00020408	3.8516	0.0020078	3.4601	0.0018037	521.7803914161638	56.735	0.47459	56.833	56.616	57.091	0.097893	-0.016097	0.00055827	NaN	41.427	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	723890			12579	1	8733	8751							0.02034313140939048
ELSPEQPSF	9	Unmodified	_ELSPEQPSF_					0	0	0		nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	nc|ENSG00000149485|O60427-2|FADS1	nc|ENSG00000149485|O60427-2|FADS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.323486328125	2	517.245472	1032.47639	1.3745	0.00071094	-0.92715	-0.00047956	0.44733	0.00023138	517.7480221100913	63.921	0.18127	63.921	63.845	64.026	0					6	4	2	0	0	0	0.024511	1	7499	7499		19.104	0	1	63894			12580	6094	8734	8752	14020	14020					-0.0385483292727713
ELSPLGPL	8	Unmodified	_ELSPLGPL_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.7132873535156	2	413.239461	824.46437	-0.10269	-4.2437E-05	-2.6473	-0.001094	-2.75	-0.0011364	413.2383753917969	73.827	0.7587	73.55	72.926	73.685	-0.2769					30	18	3	0	0	0	0.027866	1	8616	8616		25.45	0	1	233450	+		12581	25445	8735	8753	14021	14021					0.04511595120197853
ELSPLRLTAT	10	Unmodified	_ELSPLRLTAT_					0	0	0			REV__NFATC1|p.S158R|1|0.38|ENSG00000131196|chr18:79410749-79410749|T/A|missense_variant	REV__NFATC1|p.S158R|1|0.38|ENSG00000131196|chr18:79410749-79410749|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8140869140625	2	550.819138	1099.62372	-0.85002	-0.00046821	4.3492	0.0023956	3.4991	0.0019274	550.8216183053057	93.214	0.42002	93.21	93.032	93.452	-0.0042038					14	9	2	0	0	0	0.03519	1	11832	11832		29.17	8.2231	1	53192	+		12582	37275	8736	8754	14022	14022					0.07789683677515313
ELSPLSPLR	9	Unmodified	_ELSPLSPLR_					0	0	0		ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8237609863281	2	506.295299	1010.57605	0.24183	0.00012244	-2.4105	-0.0012204	-2.1687	-0.001098	506.2939396297714	42.69	0.95101	42.716	42.566	43.517	0.026012					46	25	3	0	0	0	0.024405	1	3950	3950		35.618	5.1146	1	682590			12583	13428	8737	8755	14023	14023					0.07118029477351229
ELSPLSPLR	9	Unmodified	_ELSPLSPLR_					0	0	0		ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.295299	1010.57605	-0.062234	-3.1509E-05	-0.013282	-6.7245E-06	-0.075516	-3.8233E-05	506.29511659952277	42.715	0.82742	42.603	42.281	43.109	-0.11253	-0.064449	-0.00023475	NaN	44.117	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1182000			12584	13428	8737	8755							0.07118029477351229
ELSPLSPLR	9	Unmodified	_ELSPLSPLR_					0	0	0		ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.295299	1010.57605	-0.42506	-0.00021521	0.18883	9.5605E-05	-0.23623	-0.0001196	506.2951929507136	42.894	0.75516	42.656	42.344	43.099	-0.23737	-0.010956	-3.0094E-05	NaN	44.117	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176800			12585	13428	8737	8755							0.07118029477351229
ELSPLSPLR	9	Unmodified	_ELSPLSPLR_					0	0	0		ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	ENST00000392813.8_1_3:158519897-158520086:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.295299	1010.57605	-0.76749	-0.00038858	0.44922	0.00022744	-0.31827	-0.00016114	506.29535486864955	42.92	0.79565	42.694	42.374	43.17	-0.22597	0.026562	0.00023357	NaN	44.117	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176000			12586	13428	8737	8755							0.07118029477351229
ELSPSMEAPK	10	Unmodified	_ELSPSMEAPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8133544921875	2	544.768257	1087.52196	-0.53028	-0.00028888	4.0714	0.002218	3.5411	0.0019291	544.7702825632193	92.726	1.6804	92.584	92.412	94.093	-0.14131					48	38	2	0	0	0	0.03519	1	11485	11485		20.947	5.3051	1	74751			12587	6479;18400	8738	8756	14024	14024					-0.01829930736539609
ELSQERQNL	9	Unmodified	_ELSQERQNL_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1;AHDC1|p.K946Qfs*40|1|0.71|ENSG00000126705|chr1:27549280-27549281|-/G|frameshift_variant	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2654418945312	2	558.785827	1115.5571	-0.66272	-0.00037032	1.5521	0.0008673	0.8894	0.00049698	559.2886659334681	83.414	0.85725	83.414	82.922	83.779	0					32	19	2	0	0	0	0.023655	1	10367	10367		69.628	0	1	68501			12588	4209	8739	8757	14025	14025					0.003944481156167967
ELSQLQELL	9	Unmodified	_ELSQLQELL_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.76904296875	2	536.797872	1071.58119	-0.21869	-0.00011739	0.24254	0.0001302	0.023857	1.2806E-05	536.7984234869226	87.148	0.82539	87.148	86.941	87.767	0					30	19	3	0	0	0	0.023274	1	10937	10937		67.494	16.301	1	154150			12589	3320	8740	8758	14026	14026					0.04826288549293167
ELSQSQHEV	9	Unmodified	_ELSQSQHEV_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC;ENST00000502648.5_1_5:112437417-112458501:-|nuORF	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	528.751453	1055.48835	-0.71477	-0.00037794	4.3916	0.002322	3.6768	0.0019441	528.754018202543	55.988	1.0814	56.085	55.671	56.752	0.097893					38	29	2	0	0	0	0.024319	1	6138	6138		31.53	0	1	244960			12590	8148	8741	8759	14027	14027					-0.03717216184077188
ELSREELEP	9	Unmodified	_ELSREELEP_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.834716796875	2	551.274761	1100.53497	-0.51595	-0.00028443	-1.4052	-0.00077464	-1.9211	-0.0010591	551.2740142191437	66.126	0.92406	65.853	65.297	66.221	-0.27282					37	24	2	0	0	0	0.024313	1	7845	7845		51.193	1.6567	1	191480	+		12591	28270	8742	8760	14028	14028					-0.01127776352791443
ELSRIVLEV	9	Unmodified	_ELSRIVLEV_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3154296875	2	529.316232	1056.61791	-1.0452	-0.00055323	0.77801	0.00041181	-0.26717	-0.00014142	529.3165319309153	66.902	0.49605	66.902	66.63	67.126	0					30	11	3	0	0	0	0.014034	1	7969	7969		166.68	31.868	1	2249700			12592	2489	8743	8761	14029	14029					0.09186585165844008
ELSRIVLEV	9	Unmodified	_ELSRIVLEV_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.316232	1056.61791	-0.22143	-0.00011721	0.21928	0.00011607	-0.0021498	-1.1379E-06	529.3162201202542	67.025	0.5843	67.049	66.685	67.27	0.023903	0.073056	-0.00044139	NaN	166.68	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	965860			12593	2489	8743	8761							0.09186585165844008
ELSRKAKPL	9	Unmodified	_ELSRKAKPL_					0	0	0			REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2797241210938	2	521.324391	1040.63423	0.59055	0.00030787	-0.46303	-0.00024139	0.12752	6.6478E-05	521.3240328841448	59.498	0.59972	59.498	59.145	59.745	0					24	15	2	0	0	0	0.024438	1	6830	6830		36.447	3.6343	1	505850	+		12594	20116	8744	8762	14030	14030					0.11553711122610366
ELSRLRPPS	9	Unmodified	_ELSRLRPPS_					0	0	0		ENST00000588673.3_1_19:2270553-2271441:+|nuORF	ENST00000588673.3_1_19:2270553-2271441:+|nuORF	ENST00000588673.3_1_19:2270553-2271441:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7672119140625	2	527.803823	1053.59309	-0.85927	-0.00045352	-0.41179	-0.00021734	-1.2711	-0.00067087	527.8034095449594	29.933	0.44808	29.942	29.757	30.205	0.0086708					17	10	2	0	0	0	0.024457	1	1863	1863		29.15	0	1	177890			12595	17291	8745	8763	14031	14031					0.06843950083134587
ELSRVLLL	8	Unmodified	_ELSRVLLL_					0	0	0		ENST00000580273.1_1_17:73282404-73285559:-|nuORF	ENST00000580273.1_1_17:73282404-73285559:-|nuORF	ENST00000580273.1_1_17:73282404-73285559:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2950439453125	2	471.80276	941.590967	-0.11126	-5.2492E-05	0.38651	0.00018236	0.27525	0.00012987	471.80272836776413	54.974	0.37465	55.073	54.845	55.22	0.098015					13	10	2	0	0	0	0.027866	1	5984	5984		55.504	7.5886	1	160870			12596	17148	8746	8764	14032	14032					0.11783521345353165
ELSSHQPL	8	Unmodified	_ELSSHQPL_					0	0	0			REV__SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	REV__SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2688903808594	2	455.735074	909.455596	-0.36203	-0.00016499	0.81083	0.00036952	0.4488	0.00020453	455.73523908698377	45.388	0.75015	45.24	44.83	45.581	-0.1488					50	21	3	0	0	0	0.027866	1	4330	4330		47.916	0	1	1116700	+		12597	19789	8747	8765	14033	14033					-0.0027537851626675547
ELSSHQPL	8	Unmodified	_ELSSHQPL_					0	0	0			REV__SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	REV__SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2694091796875	2	455.735074	909.455596	0.040014	1.8236E-05	0.75344	0.00034337	0.79345	0.0003616	455.7350318699842	45.247	0.8572	45.291	44.93	45.787	0.043877					49	24	4	0	0	0	0.027866	1	4314	4314		88.643	28.349	1	1065700	+		12598	19789	8747	8765	14034	14034					-0.0027537851626675547
ELSSIRLVS	9	Unmodified	_ELSSIRLVS_					0	0	0			REV__ENSG00000171561|ENST00000641541|OR2AT4	REV__ENSG00000171561|ENST00000641541|OR2AT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.2908630371094	2	502.292756	1002.57096	0.26064	0.00013092	-0.56718	-0.00028489	-0.30654	-0.00015397	502.2924316081155	54.931	0.9536	54.724	54.159	55.113	-0.20613					42	25	2	0	0	0	0.023655	1	5838	5838		42.864	0	1	2232100	+		12599	26581	8748	8766	14035	14035					0.06977725614729025
ELSTDLLFG	9	Unmodified	_ELSTDLLFG_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.29791259765625	2	497.758215	993.501877	-0.11128	-5.539E-05	-1.8925	-0.000942	-2.0038	-0.00099739	497.75688374189974	61.569	0.45057	61.64	61.434	61.884	0.071125					18	11	2	0	0	0	0.023596	1	7066	7066		35.618	0	1	99129	+		12600	27506	8749	8767	14036	14036					0.004866415951596537
ELSVDLQAR	9	Unmodified	_ELSVDLQAR_					0	0	0		nc|ENSG00000134853|P16234-3|PDGFRA	nc|ENSG00000134853|P16234-3|PDGFRA	nc|ENSG00000134853|P16234-3|PDGFRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7902221679688	2	515.780013	1029.54547	-0.095756	-4.9389E-05	-0.19671	-0.00010146	-0.29246	-0.00015085	515.7799473297072	41.366	0.49337	41.366	41.085	41.579	0					16	13	2	0	0	0	0.024477	1	3705	3705		14.865	0	1	70883			12601	18289	8750	8768	14037	14037					0.03188251092274186
ELSVFKKF	8	Unmodified	_ELSVFKKF_					0	0	0		ENSG00000132704|ENST00000361516|FCRL2;nc|ENSG00000132704|Q96LA5-5|FCRL2;ENST00000462774.1_1_1:157739644-157746863:-|nuORF	ENSG00000132704|ENST00000361516|FCRL2	ENSG00000132704|ENST00000361516|FCRL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.82135009765625	2	499.289485	996.564418	-0.74516	-0.00037205	-2.814	-0.001405	-3.5591	-0.001777	499.28717944550334	39.444	0.46441	39.467	39.242	39.706	0.023727					32	12	3	0	0	0	0.027866	1	3366	3366		23.042	0	1	348020			12602	4646	8751	8769	14038	14038					0.06599832454003263
ELSVGEGAPVT	11	Unmodified	_ELSVGEGAPVT_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3023071289062	2	529.771854	1057.52915	-0.5802	-0.00030737	1.4301	0.00075763	0.8499	0.00045025	529.7725113361942	30.552	0.41526	30.308	30.079	30.494	-0.24415					25	9	3	0	0	0	0.024756	1	1928	1928		36.447	11.928	1	517070	+		12603	20600	8752	8770	14039	14039					0.002691251355372515
ELSVGPIPI	9	Unmodified	_ELSVGPIPI_					0	0	0		ENST00000602063.5_1_19:52507122-52511283:-|nuORF	ENST00000602063.5_1_19:52507122-52511283:-|nuORF	ENST00000602063.5_1_19:52507122-52511283:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7678527832031	2	462.773668	923.532783	-0.50259	-0.00023259	-1.9518	-0.00090322	-2.4543	-0.0011358	462.7723964699347	24.399	0.87551	24.399	23.822	24.697	0					58	19	4	0	0	0	0.024443	1	992	992		26.796	13.837	1	482880			12604	17519	8753	8771	14040	14040					0.06795839700066608
ELSVGPIPI	9	Unmodified	_ELSVGPIPI_					0	0	0		ENST00000602063.5_1_19:52507122-52511283:-|nuORF	ENST00000602063.5_1_19:52507122-52511283:-|nuORF	ENST00000602063.5_1_19:52507122-52511283:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.773668	923.532783	-1.0417	-0.00048205	-1.9278	-0.00089211	-2.9694	-0.0013742	462.77269122755996	24.416	0.84503	24.369	23.913	24.758	-0.047146	-0.010733	0.0001366	NaN	19.36	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411220			12605	17519	8753	8771							0.06795839700066608
ELSVGPIPI	9	Unmodified	_ELSVGPIPI_					0	0	0		ENST00000602063.5_1_19:52507122-52511283:-|nuORF	ENST00000602063.5_1_19:52507122-52511283:-|nuORF	ENST00000602063.5_1_19:52507122-52511283:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	462.773668	923.532783	0.747	0.00034569	-3.1731	-0.0014684	-2.4261	-0.0011227	462.7719002134706	24.292	0.81835	24.371	23.912	24.731	0.078346	-0.008721	-0.001016	NaN	19.36	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440950			12606	17519	8753	8771							0.06795839700066608
ELSVHFVLD	9	Unmodified	_ELSVHFVLD_					0	0	0		ENST00000361028.5_1_6:28348556-28348682:-|nuORF	ENST00000361028.5_1_6:28348556-28348682:-|nuORF	ENST00000361028.5_1_6:28348556-28348682:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.7907104492188	2	529.779482	1057.54441	0.039677	2.102E-05	-1.732	-0.00091757	-1.6923	-0.00089655	529.7783977928124	104.73	0.63997	104.73	104.43	105.07	-0.0015945					43	19	3	0	0	0	0.024294	1	13371	13371		45.952	0	1	93055			12607	12782	8754	8772	14041	14041					0.017940367233904908
ELSVKKVN	8	Unmodified	_ELSVKKVN_					0	0	0			REV__nc|ENSG00000144908|O75891-2|ALDH1L1	REV__nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.26409912109375	2	458.776742	915.538931	-0.11561	-5.3038E-05	-2.2505	-0.0010325	-2.3661	-0.0010855	458.77623478991364	42.082	0.29273	41.95	41.789	42.082	-0.1322					10	8	2	0	0	0	0.027866	1	3837	3837		42.396	8.2236	1	92188	+		12608	24373	8755	8773	14042	14042					0.07778357931579194
ELSVKLVTV	9	Unmodified	_ELSVKLVTV_					0	0	0			REV__FGFR3-TACC3|6|fusion	REV__FGFR3-TACC3|6|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2978820800781	2	494.307875	986.601197	-0.061351	-3.0326E-05	3.188	0.0015759	3.1267	0.0015455	494.30802772488306	54.683	0.55543	54.532	54.339	54.894	-0.15036					36	15	3	0	0	0	0.024292	1	6022	6022		49.442	16.629	1	603680	+		12609	36040	8756	8774	14043	14043					0.10736084279926672
ELSVPMGLRA	10	Unmodified	_ELSVPMGLRA_					0	0	0			REV__ENSG00000161609|ENST00000447857|KASH5	REV__ENSG00000161609|ENST00000447857|KASH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.826416015625	2	536.794609	1071.57467	-0.46613	-0.00025022	-2.4319	-0.0013055	-2.8981	-0.0015557	536.7931851623465	42.696	0.8024	42.722	42.459	43.262	0.026012					28	21	2	0	0	0	0.03519	1	3908	3908		37.812	0	1	872040	+		12610	25388	8757	8775	14044	14044					0.0417407211691625
ELSVVILL	8	Unmodified	_ELSVVILL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7714538574219	2	443.286411	884.55827	0.27953	0.00012391	0.90825	0.00040262	1.1878	0.00052653	443.28484904999254	32.322	0.52152	32.13	31.814	32.335	-0.19261					22	11	3	0	0	0	0.027866	1	2237	2237		42.474	10.52	1	67203			12611	2979	8758	8776	14045	14045					0.11137314222492023
ELSVVILL	8	Unmodified	_ELSVVILL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.77130126953125	2	443.286411	884.55827	-0.032975	-1.4617E-05	-1.5432	-0.00068409	-1.5762	-0.00069871	443.2849743421471	32.301	0.33227	32.143	31.991	32.323	-0.15772					15	7	3	0	0	0	0.027866	1	2224	2224		35.201	4.6971	1	103160			12612	2979	8758	8776	14046	14046					0.11137314222492023
ELTACRQV	8	Unmodified	_ELTACRQV_					0	0	0			REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.221923828125	2	460.236927	918.459301	-0.41542	-0.00019119	-1.019	-0.00046896	-1.4344	-0.00066016	460.2360646643171	42.707	0.18109	42.475	42.349	42.53	-0.23186					6	4	2	0	0	0	0.027866	1	3861	3861		17.365	5.1581	1	82226	+		12613	24067	8759	8777	14047	14047					-0.003190320140674885
ELTAFQLIR	9	Unmodified	_ELTAFQLIR_					0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.78173828125	2	545.816399	1089.61824	-0.14082	-7.6861E-05	3.513	0.0019175	3.3722	0.0018406	545.8182103877813	75.052	0.75032	74.876	74.562	75.312	-0.17591					33	16	3	0	0	0	0.0245	1	8890	8890		29.17	12.697	1	688130	+		12614	23938	8760	8778	14048	14048					0.07702004885709357
ELTALQPQLIL	11	Unmodified	_ELTALQPQLIL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8683471679688	2	619.871371	1237.72819	-1.6623	-0.0010304	-1.675	-0.0010383	-3.3373	-0.0020687	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	1.0483	1	11338	11338		25.574	1.0549	1	1925500			12615	6676	8761	8779	14049	14049					0.11883385434248339
ELTALQPQLIL	11	Unmodified	_ELTALQPQLIL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8695678710938	2	619.871371	1237.72819	0.12405	7.6895E-05	-3.5353	-0.0021914	-3.4113	-0.0021145	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	0.99553	1	11445	11445		37.812	7.4938	1	1596200			12616	6676	8761	8779	14050	14050					0.11883385434248339
ELTDQLNPKR	10	Unmodified	_ELTDQLNPKR_					0	0	0		ENSG00000162641|ENST00000370001|AKNAD1;nc|ENSG00000162641|Q5T1N1-2|AKNAD1;nc|ENSG00000162641|Q5T1N1-3|AKNAD1;nc|ENSG00000162641|Q5T1N1-4|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.8771057128906	3	405.222693	1212.64625	0.82004	0.0003323	-1.9633	-0.00079559	-1.1433	-0.00046329	405.2217332879931	50.368	0.78387	50.089	49.729	50.513	-0.27977					47	20	3	0	0	0	0.03519	1	5053	5053		31.634	1.0654	1	1710900			12617	6970	8762	8780	14051	14051					0.04843283075138061
ELTEIPIHW	9	Unmodified	_ELTEIPIHW_					0	0	0		ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENST00000575203.5_1_16:68021411-68021937:-|nuORF	ENSG00000167261|ENST00000393847|DPEP2	ENSG00000167261|ENST00000393847|DPEP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2673950195312	2	569.300581	1136.58661	0.34585	0.00019689	4.4374	0.0025262	4.7833	0.0027231	569.3051950494632	79.1	1.0979	78.868	78.134	79.232	-0.23141					47	25	4	0	0	0	0.024262	1	9402	9402		57.811	3.0889	1	474380			12618	7666	8763	8781	14052	14052					0.02378012131748619
ELTEIPIHW	9	Unmodified	_ELTEIPIHW_					0	0	0		ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENST00000575203.5_1_16:68021411-68021937:-|nuORF	ENSG00000167261|ENST00000393847|DPEP2	ENSG00000167261|ENST00000393847|DPEP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	569.300581	1136.58661	0.40353	0.00022973	3.5405	0.0020156	3.944	0.0022453	569.8018391500102	79.104	1.0576	78.849	78.212	79.27	-0.25471	0.0098583	-0.0024444	NaN	57.811	43	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513510			12619	7666	8763	8781							0.02378012131748619
ELTEIPIHW	9	Unmodified	_ELTEIPIHW_					0	0	0		ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENST00000575203.5_1_16:68021411-68021937:-|nuORF	ENSG00000167261|ENST00000393847|DPEP2	ENSG00000167261|ENST00000393847|DPEP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	569.300581	1136.58661	0.18049	0.00010275	6.5693	0.0037399	6.7498	0.0038427	569.8052773065916	78.956	0.62997	78.801	78.602	79.232	-0.15513	-0.038614	0.0010042	NaN	57.811	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518120			12620	7666	8763	8781							0.02378012131748619
ELTESIHIA	9	Unmodified	_ELTESIHIA_					0	0	0			REV__nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	REV__nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2969665527344	2	506.769114	1011.52368	-0.22931	-0.00011621	-3.1877	-0.0016154	-3.417	-0.0017316	506.76613789241986	57.994	0.83665	58.085	57.872	58.708	0.091217					45	22	3	0	0	0	0.024487	1	6513	6513		31.955	9.3752	1	686390	+		12621	20694	8764	8782	14053	14053					0.018374463437112354
ELTFKEPTL	9	Unmodified	_ELTFKEPTL_					0	0	0			REV__ENST00000306910.8_1_19:58928465-58928570:+|nuORF	REV__ENST00000306910.8_1_19:58928465-58928570:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2841186523438	2	539.294965	1076.57538	-0.20281	-0.00010938	-3.7584	-0.0020269	-3.9613	-0.0021363	539.2935287332825	88.852	1.0925	88.852	88.513	89.605	0					36	25	2	0	0	0	0.024367	1	11243	11243		29.17	0.020503	1	70468	+		12622	30127	8765	8783	14054	14054					0.04015190037625871
ELTFKEPTL	9	Unmodified	_ELTFKEPTL_					0	0	0			REV__ENST00000306910.8_1_19:58928465-58928570:+|nuORF	REV__ENST00000306910.8_1_19:58928465-58928570:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.294965	1076.57538	-0.28816	-0.0001554	-3.6424	-0.0019643	-3.9305	-0.0021197	539.7944315246924	88.934	0.63702	88.95	88.537	89.174	0.015907	0.074672	0.0014773	NaN	29.17	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78953	+		12623	30127	8765	8783							0.04015190037625871
ELTGDELVRV	10	Unmodified	_ELTGDELVRV_					0	0	0			REV__ENSG00000213171|ENST00000368820|LINGO4	REV__ENSG00000213171|ENST00000368820|LINGO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8072509765625	2	565.806228	1129.5979	-0.12358	-6.9923E-05	1.0256	0.00058031	0.90204	0.00051038	565.8067921366278	32.713	0.77724	32.476	32.173	32.95	-0.23666					33	18	2	0	0	0	1.118	1	2293	2293		30.318	0	1	2965200	+		12624	28730	8766	8784	14055	14055					0.038287894352379226
ELTGIIQAM	9	Unmodified	_ELTGIIQAM_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7906799316406	2	488.26261	974.510668	-0.35286	-0.00017229	-3.0139	-0.0014716	-3.3668	-0.0016439	488.2609784627862	84.122	0.80234	84.122	83.866	84.669	0					32	18	2	0	0	0	0.024294	1	10527	10527		45.952	19.259	1	398680			12625	18202	8767	8785	14056	14056					0.022392919599724337
ELTHESVENE	10	Unmodified	_ELTHESVENE_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8016357421875	2	593.764757	1185.51496	-0.80066	-0.0004754	2.6239	0.001558	1.8233	0.0010826	593.7649777868584	35.853	0.40535	35.639	35.51	35.916	-0.21339					22	11	3	0	0	0	0.03519	1	2745	2745		49.536	6.6718	1	303110	+		12626	21826	8768	8786	14057	14057					-0.07037572083413579
ELTHIFNI	8	Unmodified	_ELTHIFNI_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.28955078125	2	493.768917	985.523281	-0.082441	-4.0707E-05	1.4157	0.00069904	1.3333	0.00065834	493.76970859526534	61.866	0.43738	61.609	61.383	61.821	-0.25725					13	10	2	0	0	0	0.027866	1	6896	6896		20.947	0	1	64597	+		12627	33406	8769	8787	14058	14058					0.029940714145254788
ELTHIVTVL	9	Unmodified	_ELTHIVTVL_					0	0	0			REV__ENSG00000136040|ENST00000258526|PLXNC1	REV__ENSG00000136040|ENST00000258526|PLXNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2874145507812	2	512.8055	1023.59645	0.15802	8.1036E-05	2.4033	0.0012324	2.5613	0.0013134	513.3080737219409	72.04	0.25308	72.05	71.841	72.094	0.0097733					10	6	2	0	0	0	0.024457	1	8651	8651		29.15	14.285	1	154780	+		12628	23616	8770	8788	14059	14059					0.08559200137142398
ELTHKLSI	8	Unmodified	_ELTHKLSI_					0	0	0		ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2690734863281	2	470.776742	939.538931	0.33109	0.00015587	2.3813	0.0011211	2.7124	0.0012769	470.776720793189	66.897	0.5843	66.921	66.686	67.27	0.023911					20	13	2	0	0	0	0.027866	1	7889	7889		29.15	10.825	1	161620			12629	6608	8771	8789	14060	14060					0.0667435793156983
ELTIEEFEY	9	Unmodified	_ELTIEEFEY_					0	0	0			REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7686157226562	2	586.771519	1171.52849	0.30602	0.00017956	-2.6946	-0.0015811	-2.3886	-0.0014016	586.7696825708855	79.589	0.91988	79.343	78.987	79.907	-0.2465					55	21	4	0	0	0	0.15889	1	9533	9533		97.473	23.218	1	2308400	+		12630	24730	8772	8790	14061	14061					-0.0504171430416136
ELTIEEFEY	9	Unmodified	_ELTIEEFEY_					0	0	0			REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.7677612304688	2	586.771519	1171.52849	-0.53998	-0.00031685	-2.468	-0.0014482	-3.008	-0.001765	586.769981690546	79.567	0.91061	79.348	78.791	79.701	-0.21923					35	21	2	0	0	0	0.22754	1	9552	9552		85.359	18.93	1	2530000	+		12631	24730	8772	8790	14062	14062					-0.0504171430416136
ELTIEEFEY	9	Unmodified	_ELTIEEFEY_					0	0	0			REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.7691650390625	2	586.771519	1171.52849	-0.40029	-0.00023488	-2.3096	-0.0013552	-2.7099	-0.0015901	586.7699324886055	79.489	0.9594	79.339	78.779	79.738	-0.15051					52	22	4	0	0	0	0.17455	1	9520	9520		94.006	22.129	1	2366200	+		12632	24730	8772	8790	14063	14063					-0.0504171430416136
ELTIEEFEY	9	Unmodified	_ELTIEEFEY_					0	0	0			REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	586.771519	1171.52849	-0.53998	-0.00031685	-2.468	-0.0014482	-3.008	-0.001765	586.769981690546	79.567	0.91061	79.348	78.791	79.701	-0.21923	0.0047816	2.0174E-05	NaN	97.473	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2530000	+		12633	24730	8772	8790							-0.0504171430416136
ELTIHNWDI	9	Unmodified	_ELTIHNWDI_					0	0	0			REV__nc|ENSG00000134376|P82279-5|CRB1	REV__nc|ENSG00000134376|P82279-5|CRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2673950195312	2	570.787838	1139.56112	0.70128	0.00040028	2.2952	0.0013101	2.9965	0.0017104	570.7889283803065	78.079	1.1503	77.837	77.575	78.725	-0.24232					62	26	4	0	0	0	0.024292	1	9402	9402		68.787	25.923	1	1981000	+		12634	19614	8773	8791	14064	14064					-0.003074623906513807
ELTIPNNL	8	Unmodified	_ELTIPNNL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2378845214844	2	457.2531	912.491647	-0.16355	-7.4782E-05	1.9398	0.00088697	1.7762	0.00081219	457.25365932129984	35.54	0.47444	35.584	35.459	35.933	0.04406					17	11	2	0	0	0	0.027866	1	2690	2690		12.959	0	1	57612			12635	7950	8774	8792	14065	14065					0.031900786605774556
ELTIPYGKI	9	Unmodified	_ELTIPYGKI_					0	0	0			REV__ENST00000370331.5_1_1:93169133-93170263:-|nuORF	REV__ENST00000370331.5_1_1:93169133-93170263:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.271728515625	2	517.30005	1032.58555	-0.3649	-0.00018876	-0.19226	-9.9455E-05	-0.55716	-0.00028822	517.2997750582722	85.533	1.2179	85.476	85.063	86.28	-0.057617					39	28	2	0	0	0	0.024457	1	10672	10672		29.15	0	1	195990	+		12636	31123	8775	8793	14066	14066					0.07055797762859584
ELTIRNKV	8	Unmodified	_ELTIRNKV_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7908020019531	2	486.795466	971.57638	-0.25791	-0.00012555	-1.6604	-0.00080826	-1.9183	-0.00093381	486.7946200442365	84.215	1.0948	84.215	83.823	84.917	0					33	25	2	0	0	0	0.027866	1	10502	10502		30.504	0	1	85512	+		12637	24424	8776	8794	14067	14067					0.08945449197187827
ELTKASLRA	9	Unmodified	_ELTKASLRA_					0	0	0			REV__DUS2|p.S339L|1|0.4|ENSG00000167264|chr16:68075438-68075438|C/T|missense_variant	REV__DUS2|p.S339L|1|0.4|ENSG00000167264|chr16:68075438-68075438|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.77667236328125	2	494.792924	987.571294	-0.3389	-0.00016768	-2.4435	-0.001209	-2.7824	-0.0013767	494.79296739013097	27.898	0.55771	27.746	27.482	28.04	-0.15195					35	13	4	0	0	0	0.022832	1	1545	1545		44.377	0	1	416250	+		12638	19718	8777	8795	14068	14068					0.07701145334567627
ELTKGLLPL	9	Unmodified	_ELTKGLLPL_					0	0	0		ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.30584716796875	2	492.310418	982.606283	0.54105	0.00026636	-0.07357	-3.6219E-05	0.46748	0.00023015	492.31025246750056	69.604	0.70414	69.311	69.05	69.754	-0.29291					25	17	2	0	0	0	0.024397	1	8396	8396		47.657	8.6358	1	238720			12639	8633	8778	8796	14069	14069					0.11428388142530821
ELTKGLLPL	9	Unmodified	_ELTKGLLPL_					0	0	0		ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3058166503906	2	492.310418	982.606283	-0.55945	-0.00027542	1.5518	0.00076398	0.99238	0.00048856	492.3108821299742	69.342	0.53683	69.358	69.133	69.67	0.015121					25	13	2	0	0	0	0.024397	1	8304	8304		31.53	9.5699	1	199560			12640	8633	8778	8796	14070	14070					0.11428388142530821
ELTKITKPK	9	Unmodified	_ELTKITKPK_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2422485351562	2	529.334424	1056.6543	-0.40144	-0.0002125	-0.185	-9.7924E-05	-0.58644	-0.00031042	529.3339638184774	44.274	0.82689	44.311	43.888	44.715	0.0369					47	23	3	0	0	0	0.024495	1	4085	4085		19.997	0	1	726570	+		12641	37256	8779	8797	14071	14071					0.12823462062556246
ELTKIVQIKGI	11	Unmodified	_ELTKIVQIKGI_					0	0	0			REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF	REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.392578125	2	621.395013	1240.77547	0.47212	0.00029337	-3.7569	-0.0023345	-3.2847	-0.0020411	621.3926288383752	103.41	0.93773	103.28	103.02	103.96	-0.12723					48	21	4	0	0	0	1.0344	1	12873	12873		29.17	4.9382	1	622120	+		12642	33167	8780	8798	14072	14072					0.16471664705204603
ELTKKLIN	8	Unmodified	_ELTKKLIN_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7691345214844	2	479.800217	957.585882	0.47433	0.00022758	-0.59215	-0.00028411	-0.11782	-5.653E-05	479.79975620971544	51.89	0.8387	51.89	51.633	52.472	0					58	22	4	0	0	0	0.027866	1	5513	5513		73.975	17.254	1	1806900	+		12643	21094;36411	8781	8799	14073	14073					0.10539217482710228
ELTKVPRRGR	10	Unmodified	_ELTKVPRRGR_					0	0	0			REV__ENSG00000170613|ENST00000302938|GARIN3	REV__ENSG00000170613|ENST00000302938|GARIN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.3696899414062	2	606.370195	1210.72584	-0.71978	-0.00043645	-0.37816	-0.00022931	-1.0979	-0.00066576	606.3698624712221	92.607	2.6722	92.599	91.708	94.381	-0.0082855					144	64	4	0	0	0	1.1265	1	11731	11731		24.519	0.99649	1	575490	+		12644	26491	8782	8800	14074	14074					0.12890394539772387
ELTLASIDL	9	Unmodified	_ELTLASIDL_					0	0	0		ENSG00000197646|ENST00000397747|PDCD1LG2	ENSG00000197646|ENST00000397747|PDCD1LG2	ENSG00000197646|ENST00000397747|PDCD1LG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7908630371094	2	487.773865	973.533177	-1.006	-0.00049072	4.1181	0.0020087	3.112	0.001518	487.7762096325586	83.905	0.43478	83.814	83.682	84.117	-0.090454					12	9	2	0	0	0	0.023817	1	10451	10451		42.396	10.866	1	69231			12645	10029	8783	8801	14075	14075					0.04535214629231632
ELTLKHKP	8	Unmodified	_ELTLKHKP_					0	0	0			REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.2586364746094	2	483.292559	964.570566	-0.60196	-0.00029092	0.40104	0.00019382	-0.20093	-9.7106E-05	483.29268415869984	27.26	0.51064	27.092	26.892	27.402	-0.16816					24	11	3	0	0	0	0.027866	1	1515	1515		30.504	14.862	1	297930	+		12646	22116	8784	8802	14076	14076					0.08686350685513844
ELTLKVLR	8	Unmodified	_ELTLKVLR_					0	0	0		ENST00000525598.1_1_11:118982915-118984090:+|nuORF;ENST00000529874.5_1_11:118980840-118984381:+|nuORF;nc|ENSG00000172375|O14523-2|C2CD2L;ENSG00000172375|ENST00000648610|C2CD2L	ENST00000525598.1_1_11:118982915-118984090:+|nuORF;nc|ENSG00000172375|O14523-2|C2CD2L	ENST00000525598.1_1_11:118982915-118984090:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7450256347656	2	486.316035	970.617516	-1.1714	-0.00056968	1.1551	0.00056174	-0.016325	-7.939E-06	486.31661735260866	61.905	0.2468	61.967	61.806	62.052	0.062767					11	6	2	0	0	0	0.027866	1	7115	7115		21.96	0	1	124590			12647	16098;8270	8785	8803	14077	14077					0.13103210236670293
ELTLPKLE	8	Unmodified	_ELTLPKLE_					0	0	0			REV__nc|ENSG00000164741|Q96QB1-4|DLC1	REV__nc|ENSG00000164741|Q96QB1-4|DLC1	MSMS	OPSCC_40_ClassI_Rep-2	5	471.7772521972656	2	471.778951	941.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.91	1	28.741	28.241	29.241	-0.16897								0	0	0	0.73703	1	1723	1723		38.806	0	1		+		12648	25797	8786	8804	14078	14078					0.07023822354472031
ELTLPLIND	9	Unmodified	_ELTLPLIND_					0	0	0			REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8087768554688	2	514.28714	1026.55973	0.069119	3.5547E-05	2.9466	0.0015154	3.0158	0.001551	514.2886196448952	67.948	0.59034	67.66	67.388	67.978	-0.28835					22	14	2	0	0	0	0.022832	1	8063	8063		71.877	0	1	325960	+		12649	23332	8787	8805	14079	14079					0.047509035205848704
ELTLRVLN	8	Unmodified	_ELTLRVLN_					0	0	0			REV__ENSG00000139537|ENST00000320516|CCDC65	REV__ENSG00000139537|ENST00000320516|CCDC65	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2933044433594	2	479.290017	956.565481	0.032555	1.5603E-05	-0.053332	-2.5561E-05	-0.020777	-9.9581E-06	479.28979312798833	31.175	0.74192	30.934	30.627	31.369	-0.24109					45	18	4	0	0	0	0.6248	1	2063	2063		73.975	5.1879	1	4129400	+		12650	23945	8788	8806	14080	14080					0.08546046822903008
ELTLSYNY	8	Unmodified	_ELTLSYNY_					0	0	0			REV__sp|P03218|BILF2_EBVB9GlycoproteinBILF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF2PE=1SV=1	REV__sp|P03218|BILF2_EBVB9GlycoproteinBILF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.28204345703125	2	501.742565	1001.47058	1.0622	0.00053295	4.0334	0.0020237	5.0956	0.0025567	501.7435644906883	51.381	0.11933	51.269	51.169	51.288	-0.11163					4	2	2	0	0	0	0.027866	1	5273	5273		25.45	8.0852	1	40198	+		12651	37545	8789	8807	14081	14081					-0.030099314389531173
ELTLVIQIA	9	Unmodified	_ELTLVIQIA_					0	0	0			REV__KIF26B|p.M201I|1|0.22|ENSG00000162849|chr1:245366971-245366971|G/T|missense_variant	REV__KIF26B|p.M201I|1|0.22|ENSG00000162849|chr1:245366971-245366971|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3070373535156	2	500.307875	998.601197	-0.67472	-0.00033757	-2.3489	-0.0011752	-3.0237	-0.0015128	500.3065616954111	31.182	1.2354	31.182	30.634	31.869	0					65	29	4	0	0	0	0.75397	1	2079	2079		42.396	5.237	1	2674300	+		12652	36182	8790	8808	14082	14082					0.10184084279899253
ELTLYTLLL	9	Unmodified	_ELTLYTLLL_					0	0	0			REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7374877929688	2	539.823358	1077.63216	-0.036576	-1.9745E-05	-0.94851	-0.00051203	-0.98509	-0.00053177	539.8228276016648	37.141	0.34026	36.948	36.774	37.114	-0.193					11	8	2	0	0	0	0.024541	1	2946	2946		12.207	0	1	82136	+		12653	23349	8791	8809	14083	14083					0.09645237594168066
ELTPEVAPE	9	Unmodified	_ELTPEVAPE_					0	0	0		ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.7481689453125	2	492.747847	983.481142	0.3919	0.00019311	1.2059	0.0005942	1.5978	0.00078731	492.74834299154804	50.669	1.0499	50.489	50.172	51.222	-0.18071					56	27	3	0	0	0	0.59099	1	5165	5165		53.351	9.2347	1	2604600			12654	11031	8792	8810	14084	14084					-0.011259487845109106
ELTPEVAPE	9	Unmodified	_ELTPEVAPE_					0	0	0		ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.747847	983.481142	-0.24341	-0.00011994	2.0594	0.0010148	1.816	0.00089482	492.7487532661676	50.569	0.73868	50.458	50.121	50.859	-0.11163	-0.031916	0.00065763	NaN	53.351	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1403100			12655	11031	8792	8810							-0.011259487845109106
ELTPEVAPE	9	Unmodified	_ELTPEVAPE_					0	0	0		ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	ENSG00000274588|ENST00000611977|DGKK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.747847	983.481142	0.33969	0.00016738	1.482	0.00073023	1.8217	0.00089762	492.74847977819144	50.799	0.89172	50.522	50.186	51.078	-0.27643	0.032704	8.8581E-05	NaN	53.351	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2055200			12656	11031	8792	8810							-0.011259487845109106
ELTPKDNIY	9	Unmodified	_ELTPKDNIY_					0	0	0		ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8346557617188	2	546.782222	1091.54989	-0.48409	-0.00026469	1.112	0.00060802	0.62791	0.00034333	546.7820878294651	48.518	0.50486	48.336	48.126	48.631	-0.18206					16	13	2	0	0	0	0.024374	1	4839	4839		49.442	5.3247	1	162100			12657	6781	8793	8811	14085	14085					0.007777155151870829
ELTQYLTFW	9	Unmodified	_ELTQYLTFW_					0	0	0			REV__ENST00000346178.8_1_11:62394342-62394778:-|nuORF	REV__ENST00000346178.8_1_11:62394342-62394778:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.8657531738281	3	400.869368	1199.58628	-1.376	-0.00055158	-1.3052	-0.00052321	-2.6812	-0.0010748	400.8686840613409	44.199	0.63925	43.98	43.826	44.466	-0.21938					22	17	2	0	0	0	0.024541	1	4099	4099		7.8045	0	1	132280	+		12658	30701	8794	8812	14086	14086					-0.005534075881087119
ELTRQHPQ	8	Unmodified	_ELTRQHPQ_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7817077636719	2	504.764697	1007.51484	-0.70605	-0.00035639	3.2535	0.0016423	2.5475	0.0012859	504.7663324417179	52.692	0.72402	52.433	51.879	52.603	-0.25838					32	18	2	0	0	0	0.027866	1	5424	5424		10.866	0	1	239140	+		12659	28467	8795	8813	14087	14087					0.011385174978954637
ELTRYSPAVGL	11	Unmodified	_ELTRYSPAVGL_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5555419921875	3	402.555672	1204.64519	0.76103	0.00030636	-2.0714	-0.00083385	-1.3104	-0.0005275	402.5546952098382	25.847	0.67825	25.677	25.371	26.049	-0.17078					46	18	4	0	0	0	1.0123	1	1254	1254		34.087	1.336	1	1229900			12660	850	8796	8814	14088	14088					0.05105068706234306
ELTRYSPAVGL	11	Unmodified	_ELTRYSPAVGL_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	402.555672	1204.64519	0.73106	0.00029429	-2.7882	-0.0011224	-2.0572	-0.00082812	402.554363287408	25.996	0.59236	25.996	25.611	26.203	0	0.14302	-0.0012277	NaN	34.087	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107780			12661	850	8796	8814							0.05105068706234306
ELTRYSPAVGL	11	Unmodified	_ELTRYSPAVGL_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	402.555672	1204.64519	0.052323	2.1063E-05	-1.9233	-0.00077422	-1.8709	-0.00075316	402.55466420471544	26.052	0.71292	26.029	25.651	26.364	-0.023088	0.17617	-0.00018314	NaN	34.087	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99894			12662	850	8796	8814							0.05105068706234306
ELTRYSPAVGL	11	Unmodified	_ELTRYSPAVGL_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	402.555672	1204.64519	2.5589	0.0010301	-5.3476	-0.0021527	-2.7887	-0.0011226	402.5535487173276	25.793	0.70748	25.873	25.622	26.33	0.08009	0.019818	-0.0043186	NaN	34.087	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99198			12663	850	8796	8814							0.05105068706234306
ELTRYSPAVGL	11	Unmodified	_ELTRYSPAVGL_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	402.555672	1204.64519	-0.034453	-1.3869E-05	-1.5265	-0.00061451	-1.561	-0.00062838	402.55499641683815	26.043	0.49865	25.807	25.508	26.007	-0.23603	-0.04576	0.000296	NaN	34.087	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124300			12664	850	8796	8814							0.05105068706234306
ELTRYSPAVGL	11	Unmodified	_ELTRYSPAVGL_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	402.555672	1204.64519	-1.3051	-0.00052539	-0.48448	-0.00019503	-1.7896	-0.00072042	402.55540618376983	25.899	0.58109	25.736	25.457	26.038	-0.16331	-0.11705	0.0015544	NaN	34.087	41	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1094300			12665	850	8796	8814							0.05105068706234306
ELTSIQKLD	9	Unmodified	_ELTSIQKLD_					0	0	0			REV__nc|ENSG00000014123|O94874-3|UFL1	REV__nc|ENSG00000014123|O94874-3|UFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8191528320312	2	523.790047	1045.56554	0.54882	0.00028747	-0.54471	-0.00028531	0.0041143	2.155E-06	523.7897086784186	54.462	0.61928	54.56	54.188	54.807	0.098015					24	17	2	0	0	0	0.023837	1	5852	5852		64.207	0	1	225840	+		12666	19963	8797	8815	14089	14089					0.04458002032242803
ELTSLPLTQ	9	Unmodified	_ELTSLPLTQ_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.31365966796875	2	501.279315	1000.54408	0.3393	0.00017009	-0.014712	-7.375E-06	0.32459	0.00016271	501.27910713792465	77.289	0.95138	77.289	76.882	77.833	0					36	22	2	0	0	0	0.024405	1	9558	9558		27.882	0	1	223660	+		12667	28806	8798	8816	14090	14090					0.04382617003534506
ELTVDEFL	8	Unmodified	_ELTVDEFL_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF;ENST00000469563.1_1_1:894013-894620:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.26885986328125	2	483.244941	964.475328	-0.85294	-0.00041218	2.8817	0.0013926	2.0287	0.00098037	483.2466602858963	83.125	0.29953	83.152	82.874	83.173	0.026558					11	6	2	0	0	0	0.027866	1	10312	10312		68.485	0	1	85565			12668	9769	8799	8817	14091	14091					-0.008330472961915802
ELTVFRETN	9	Unmodified	_ELTVFRETN_					0	0	0		ENST00000483120.1_1_1:15684662-15690294:+|nuORF	ENST00000483120.1_1_1:15684662-15690294:+|nuORF	ENST00000483120.1_1_1:15684662-15690294:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3051147460938	2	554.785296	1107.55604	-1.4266	-0.00079145	3.5419	0.001965	2.1153	0.0011735	554.7872231620327	44.473	0.99335	44.329	43.604	44.597	-0.14471					43	28	2	0	0	0	0.022587	1	4108	4108		74.255	0	1	190600			12669	15276	8800	8818	14092	14092					0.006562337467130419
ELTVIILIP	9	Unmodified	_ELTVIILIP_					0	0	0			REV__ENSG00000073282|ENST00000264731|TP63	REV__ENSG00000073282|ENST00000264731|TP63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.3077392578125	2	505.828443	1009.64233	0.62824	0.00031778	0.13343	6.7494E-05	0.76167	0.00038527	506.3314989788136	83.971	0.25336	83.759	83.558	83.812	-0.21158					6	5	2	0	0	0	0.024487	1	10131	10131		24.203	1.1603	1	15772	+		12670	20497	8801	8819	14093	14093					0.13789845319377037
ELVADFSK	8	Unmodified	_ELVADFSK_					0	0	0			REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2369689941406	2	454.739825	907.465098	-0.34458	-0.00015669	2.4371	0.0011082	2.0925	0.00095154	454.74152584556947	43.003	1.0392	42.765	42.38	43.419	-0.23736					43	27	3	0	0	0	0.027866	1	4003	4003		32.812	14.488	1	155600	+		12671	23253	8802	8820	14094	14094					0.007663897692395949
ELVAFKKKP	9	Unmodified	_ELVAFKKKP_					0	0	0			REV__ENSG00000180745|ENST00000368671|CLRN3	REV__ENSG00000180745|ENST00000368671|CLRN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7724609375	2	530.331685	1058.64882	-1.5737	-0.00083458	-2.4608	-0.001305	-4.0345	-0.0021396	530.3302400218398	28.911	0.64817	28.666	28.363	29.011	-0.24524					33	14	3	0	0	0	0.024495	1	1704	1704		26.693	0	1	367690	+		12672	27359	8803	8821	14095	14095					0.12183783270756976
ELVAGQVRLT	10	Unmodified	_ELVAGQVRLT_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8350830078125	2	543.319306	1084.62406	0.2039	0.00011078	-0.51659	-0.00028067	-0.31269	-0.00016989	543.3187222383875	19.007	0.44524	18.846	18.639	19.084	-0.1608					14	8	2	0	0	0	0.03519	1	390	390		17.468	0	1	46892			12673	843	8804	8822	14096	14096					0.08513103397376653
ELVAKKRN	8	Unmodified	_ELVAKKRN_					0	0	0		ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	ENSG00000006788|ENST00000252172|MYH13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2842102050781	2	479.295633	956.576714	0.25018	0.00011991	0.99163	0.00047528	1.2418	0.00059519	479.2961246346513	76.209	0.15788	76.209	76.15	76.308	0					5	3	2	0	0	0	0.027866	1	9401	9401		26.693	0	1	105580			12674	802	8805	8823	14097	14097					0.09668868917037798
ELVAKVFDGG	10	Unmodified	_ELVAKVFDGG_					0	0	0		ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-6|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A;nc|ENSG00000186642|O00408-5|PDE2A	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2507934570312	2	517.779482	1033.54441	0.27436	0.00014206	1.1206	0.00058025	1.395	0.0007223	517.7806348399847	47.544	0.83791	47.274	46.73	47.567	-0.26939					49	22	4	0	0	0	0.03519	1	4573	4573		36.447	9.6506	1	152680			12675	16402	8806	8824	14098	14098					0.028980367233771176
ELVDERRLL	9	Unmodified	_ELVDERRLL_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.3104858398438	2	571.830037	1141.64552	-0.082145	-4.6973E-05	2.7307	0.0015615	2.6485	0.0015145	571.8311068645971	75.016	0.5034	74.753	74.65	75.153	-0.26326					17	11	2	0	0	0	0.024292	1	8901	8901		58.782	7.4465	1	107160	+		12676	22450	8807	8825	14099	14099					0.08036488426114374
ELVDLYSEL	9	Unmodified	_ELVDLYSEL_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.322265625	2	540.776605	1079.53866	-1.966	-0.0010632	4.209	0.0022761	2.243	0.001213	540.7786821369563	60.023	0.30629	60.102	59.974	60.28	0.078884					15	7	4	0	0	0	0.024323	1	6824	6824		35.618	19.976	1	70645	+		12677	24738	8808	8826	14100	14100					0.0020689342104560637
ELVEIHSQV	9	Unmodified	_ELVEIHSQV_					0	0	0		ENST00000339950.4_1_1:62916200-62916269:+|nuORF	ENST00000339950.4_1_1:62916200-62916269:+|nuORF	ENST00000339950.4_1_1:62916200-62916269:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7693481445312	2	527.282389	1052.55022	-0.95213	-0.00050204	0.37274	0.00019654	-0.57939	-0.0003055	527.2824766407274	53.225	0.72879	53.077	52.873	53.602	-0.14723					42	19	4	0	0	0	0.021219	1	5758	5758		101.25	0	1	1020500			12678	12466	8809	8827	14101	14101					0.026051352350577872
ELVEKKVCKA	10	Unmodified	_ELVEKKVCKA_					0	0	0		ENSG00000132323|ENST00000254654|ILKAP	ENSG00000132323|ENST00000254654|ILKAP	ENSG00000132323|ENST00000254654|ILKAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.3154296875	2	573.831191	1145.64783	-1.1615	-0.00066651	0.36188	0.00020766	-0.79963	-0.00045885	573.831328066373	56.793	1.2889	56.793	56.207	57.496	0					56	35	2	0	0	0	0.03519	1	6347	6347		29.17	0	1	356730			12679	4591	8810	8828	14102	14102					0.0808320083954186
ELVFGLDLK	9	Unmodified	_ELVFGLDLK_					0	0	0		ENSG00000214107|ENST00000397548|MAGEB1	ENSG00000214107|ENST00000397548|MAGEB1	ENSG00000214107|ENST00000397548|MAGEB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2992553710938	2	517.30005	1032.58555	-0.17278	-8.9382E-05	-0.6613	-0.00034209	-0.83408	-0.00043147	517.2996675560152	67.943	1.26	67.962	67.466	68.726	0.018921					84	32	4	0	0	0	0.33245	1	8046	8046		71.296	2.5089	1	8216800			12680	10543	8811	8829	14103	14103					0.07055797762859584
ELVGKRLV	8	Unmodified	_ELVGKRLV_					0	0	0			REV__ENST00000486620.5_1_22:46733772-46733829:+|nuORF	REV__ENST00000486620.5_1_22:46733772-46733829:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.29534912109375	2	457.295102	912.575651	-0.48825	-0.00022327	0.3309	0.00015132	-0.15735	-7.1956E-05	457.2952369593063	55.851	0.91164	55.948	55.561	56.473	0.097893					69	24	4	0	0	0	0.56067	1	6126	6126		79.939	16.633	1	6402600	+		12681	33597	8812	8830	14104	14104					0.11586654548125352
ELVHAWLEP	9	Unmodified	_ELVHAWLEP_					0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.7957153320312	2	547.287474	1092.5604	-1.2006	-0.00065707	-3.5655	-0.0019513	-4.7661	-0.0026084	547.2851427403393	53.268	1.0809	53.12	52.873	53.954	-0.14723					35	29	2	0	0	0	0.024457	1	5854	5854		29.15	0	1	630510	+		12682	19502	8813	8831	14105	14105					0.017817429602928314
ELVIFLQDD	9	Unmodified	_ELVIFLQDD_					0	0	0			REV__ENSG00000177602|ENST00000325418|HASPIN	REV__ENSG00000177602|ENST00000325418|HASPIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.316162109375	2	546.284597	1090.55464	-0.82501	-0.00045069	3.0674	0.0016757	2.2424	0.001225	546.2859382812053	85.721	2.1877	85.663	84.689	86.877	-0.05761					112	51	3	0	0	0	0.024405	1	10787	10787		35.618	1.4457	1	688170	+		12683	27128	8814	8832	14106	14106					0.012985996579345738
ELVKIADFGL	10	Unmodified	_ELVKIADFGL_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK;ENSG00000112144|ENST00000676107|CILK1;nc|ENSG00000112144|Q9UPZ9-2|CILK1	nc|ENSG00000111837|P20794-3|MAK;ENSG00000112144|ENST00000676107|CILK1	nc|ENSG00000111837|P20794-3|MAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7828979492188	2	552.818607	1103.62266	-0.64847	-0.00035849	-2.3438	-0.0012957	-2.9922	-0.0016542	552.8165872228332	82.646	0.26176	82.506	82.347	82.608	-0.14014					9	5	2	0	0	0	0.03519	1	9960	9960		64.207	8.7031	1	44687			12684	3149;3175	8815	8833	14107	14107					0.07499469308618245
ELVKKEVYVIM	11	Unmodified	_ELVKKEVYVIM_					0	0	0			REV__nc|ENSG00000008130|O95544-3|NADK	REV__nc|ENSG00000008130|O95544-3|NADK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.78961181640625	3	450.92823	1349.76286	0.54346	0.00024506	-2.3976	-0.0010812	-1.8542	-0.0008361	451.26151999220747	20.112	0.2456	19.888	19.68	19.926	-0.22344					7	4	2	0	0	0	0.024821	1	479	479		19.263	0	1	19934	+		12685	19875	8816	8834	14108	14108					0.10196885250684318
ELVKLPFLP	9	Unmodified	_ELVKLPFLP_					0	0	0			REV__ENST00000337619.9_1_7:100803850-100804129:+|nuORF	REV__ENST00000337619.9_1_7:100803850-100804129:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7698364257812	2	528.328611	1054.64267	0.32808	0.00017333	0.82382	0.00043525	1.1519	0.00060858	528.3262437689277	40.616	1.0452	40.493	40.006	41.051	-0.12293					53	28	4	0	0	0	0.024541	1	3519	3519		16.473	8.7829	1	292310	+		12686	30567	8817	8835	14109	14109					0.11753265039237704
ELVKMGRKG	9	Unmodified	_ELVKMGRKG_					0	0	0			REV__ENST00000557635.5_1_12:57503740-57503821:-|nuORF	REV__ENST00000557635.5_1_12:57503740-57503821:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8183288574219	2	509.297319	1016.58008	-0.48368	-0.00024633	3.633	0.0018503	3.1494	0.001604	509.2992659893527	75.715	1.4296	75.47	74.675	76.104	-0.24455					57	37	2	0	0	0	0.024292	1	9187	9187		49.442	10.189	1	920120	+		12687	35075	8818	8836	14110	14110					0.07245795699418522
ELVKMGRKG	9	Unmodified	_ELVKMGRKG_					0	0	0			REV__ENST00000557635.5_1_12:57503740-57503821:-|nuORF	REV__ENST00000557635.5_1_12:57503740-57503821:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.297319	1016.58008	0.18715	9.5316E-05	3.0173	0.0015367	3.2044	0.001632	509.29878835257534	75.582	0.92029	75.592	75.363	76.284	0.010376	0.17193	-0.00056097	NaN	39.253	46	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	968870	+		12688	35075	8818	8836							0.07245795699418522
ELVKSYRH	8	Unmodified	_ELVKSYRH_					0	0	0			REV__ENSG00000140943|ENST00000343411|MBTPS1	REV__ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7716674804688	2	516.285266	1030.55598	-1.1162	-0.0005763	3.714	0.0019175	2.5977	0.0013412	516.7910964958812	25.136	0.42312	25.101	24.815	25.238	-0.034397					13	9	2	0	0	0	0.027866	1	1135	1135		45.972	7.1661	1	59335	+		12689	24049	8819	8837	14111	14111					0.04192278537379934
ELVLGQAK	8	Unmodified	_ELVLGQAK_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.7386169433594	2	429.258185	856.501818	0.33883	0.00014545	0.9395	0.00040329	1.2783	0.00054874	429.2583666638437	39.605	0.64197	39.379	39.059	39.701	-0.22602					28	16	3	0	0	0	0.027866	1	3383	3383		37.159	23.384	1	232790	+		12690	22381	8820	8838	14112	14112					0.06782686385804482
ELVLGQAK	8	Unmodified	_ELVLGQAK_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	429.258185	856.501818	-0.074956	-3.2176E-05	3.6857	0.0015821	3.6108	0.00155	429.2585474183577	39.418	0.48463	39.254	38.934	39.419	-0.16459	-0.06252	0.0018687	NaN	42.396	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132900	+		12691	22381	8820	8838							0.06782686385804482
ELVLLLHALL	10	Unmodified	_ELVLLLHALL_					0	0	0		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3296508789062	2	567.368267	1132.72198	0.27263	0.00015468	-1.8863	-0.0010702	-1.6136	-0.00091553	567.3672149641352	90.738	0.46388	90.6	90.321	90.785	-0.13824					13	10	3	0	0	0	0.03519	1	11088	11088		21.96	5.4867	1	70692			12692	9111	8821	8839	14113	14113					0.16092911993382586
ELVLMKVLG	9	Unmodified	_ELVLMKVLG_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENSG00000163608|ENST00000314400|NEPRO;ENST00000462295.5_1_3:112729957-112738391:-|nuORF;ENST00000470663.1_1_3:112731453-112738391:-|nuORF;ENST00000494891.5_1_3:112731453-112738391:-|nuORF;ENST00000486271.5_1_3:112732111-112738494:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.30950927734375	2	501.306821	1000.59909	0.20991	0.00010523	1.9623	0.00098372	2.1722	0.0010889	501.3075565272441	18.589	0.29704	18.386	18.262	18.559	-0.20371					9	5	2	0	0	0	0.98697	1	319	319		23.042	2.0956	1	69598			12693	7113	8822	8840	14114	14114					0.09881332270447274
ELVLMKVLG	9	Unmodified	_ELVLMKVLG_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENSG00000163608|ENST00000314400|NEPRO;ENST00000462295.5_1_3:112729957-112738391:-|nuORF;ENST00000470663.1_1_3:112731453-112738391:-|nuORF;ENST00000494891.5_1_3:112731453-112738391:-|nuORF;ENST00000486271.5_1_3:112732111-112738494:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.306821	1000.59909	0.79265	0.00039736	1.3424	0.00067297	2.1351	0.0010703	502.31044337410964	18.563	0.34669	18.407	18.247	18.594	-0.15637	0.010625	-0.00026911	NaN	23.042	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66122			12694	7113	8822	8840							0.09881332270447274
ELVLPLSV	8	Unmodified	_ELVLPLSV_					0	0	0			REV__ENSG00000170185|ENST00000307017|USP38	REV__ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2187805175781	2	435.270761	868.52697	-0.48913	-0.0002129	1.6597	0.00072241	1.1705	0.0005095	435.27149163163466	30.28	0.70477	30.355	29.962	30.667	0.074314					22	16	2	0	0	0	0.027866	1	1854	1854		18.324	8.8539	1	619820	+		12695	26441	8823	8841	14115	14115					0.08744741188388616
ELVLVAGHVG	10	Unmodified	_ELVLVAGHVG_					0	0	0			REV__ENSG00000189337|ENST00000376030|KAZN	REV__ENSG00000189337|ENST00000376030|KAZN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2685852050781	2	497.290017	992.565481	-0.68736	-0.00034182	1.0469	0.00052062	0.35955	0.0001788	497.28915903327334	35.26	0.27235	35.073	34.948	35.22	-0.18675					9	6	3	0	0	0	0.03519	1	2646	2646		40.573	16.37	1	31770	+		12696	28113	8824	8842	14116	14116					0.068900468229117
ELVNAALLAG	10	Unmodified	_ELVNAALLAG_					0	0	0		ENSG00000183977|ENST00000389050|PP2D1	ENSG00000183977|ENST00000389050|PP2D1	ENSG00000183977|ENST00000389050|PP2D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29248046875	2	485.782025	969.549496	-0.75109	-0.00036486	-0.64241	-0.00031207	-1.3935	-0.00067694	485.78224259867045	77.832	1.0056	77.848	77.19	78.195	0.015907					53	23	5	0	0	0	0.03519	1	9564	9564		52.937	12.159	1	735850			12697	9298	8825	8843	14117	14117					0.06350340586004677
ELVNIRKV	8	Unmodified	_ELVNIRKV_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.74615478515625	2	485.805834	969.597115	-0.22958	-0.00011153	0.85466	0.0004152	0.62508	0.00030367	485.8055625087582	62.431	0.57533	62.21	61.844	62.42	-0.22097					42	14	4	0	0	0	0.027866	1	7014	7014		87.754	0	1	1891300			12698	9821	8826	8844	14118	14118					0.11110039576863073
ELVPPVQVQ	9	Unmodified	_ELVPPVQVQ_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.77142333984375	2	504.78985	1007.56515	-0.92328	-0.00046606	0.83749	0.00042276	-0.085793	-4.3308E-05	504.7901175420852	48.876	0.47191	48.946	48.803	49.275	0.070496					18	12	2	0	0	0	0.024436	1	4936	4936		30.504	0	1	235190	+		12699	24611	8827	8845	14119	14119					0.061666271030503594
ELVQIQRF	8	Unmodified	_ELVQIQRF_					0	0	0			REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7855224609375	2	516.795466	1031.57638	-0.59939	-0.00030976	-0.091368	-4.7219E-05	-0.69076	-0.00035698	516.7950696270577	44.945	0.69516	44.733	44.292	44.988	-0.21109					27	17	2	0	0	0	0.027866	1	4175	4175		23.042	0	1	678790	+		12700	22707	8828	8846	14120	14120					0.06185449197187154
ELVRIRHQL	9	Unmodified	_ELVRIRHQL_					0	0	0			REV__ENSG00000176531|ENST00000292140|PHLDB3	REV__ENSG00000176531|ENST00000292140|PHLDB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3533935546875	2	582.354014	1162.69348	-0.88276	-0.00051408	-0.059109	-3.4422E-05	-0.94187	-0.0005485	582.3538408674295	102.24	1.4134	102.24	101.94	103.36	0.0073471					111	33	7	0	0	0	0.96322	1	13037	13037		27.882	0	1	7932900	+		12701	27027	8829	8847	14121	14121					0.11863607136797327
ELVRLQKD	8	Unmodified	_ELVRLQKD_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;ENST00000575475.2_1_17:5185712-5281605:+|nuORF	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7852478027344	2	500.792924	999.571294	0.12274	6.1469E-05	3.7279	0.0018669	3.8507	0.0019284	500.7942988524963	72.205	0.44511	71.93	71.626	72.071	-0.27509					20	10	3	0	0	0	0.027866	1	8447	8447		35.618	0	1	373510			12702	1007	8830	8848	14122	14122					0.07149145334574314
ELVRRLEEN	9	Unmodified	_ELVRRLEEN_					0	0	0			REV__ENSG00000124279|ENST00000264669|FASTKD3	REV__ENSG00000124279|ENST00000264669|FASTKD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.3177490234375	2	579.317294	1156.62004	-0.33748	-0.00019551	-2.5482	-0.0014762	-2.8857	-0.0016717	579.3156156902409	99.309	0.78602	99.32	98.957	99.743	0.010239					33	15	3	0	0	0	0.77768	1	12661	12661		40.778	1.5253	1	116730	+		12703	22757	8831	8849	14123	14123					0.04799013903675586
ELVTACFPE	9	Unmodified	_ELVTACFPE_					0	0	0			REV__ENST00000471679.1_1_3:17688462-17784150:-|nuORF	REV__ENST00000471679.1_1_3:17688462-17784150:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3230895996094	2	504.738968	1007.46338	-0.45966	-0.00023201	3.8595	0.001948	3.3998	0.001716	505.2428527782634	79.056	1.2946	78.884	78.4	79.695	-0.17226					35	30	2	0	0	0	0.02435	1	9855	9855		14.137	0	1	137510	+		12704	33180	8832	8850	14124	14124					-0.040049873110206136
ELVTLQLIL	9	Unmodified	_ELVTLQLIL_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2468872070312	2	521.33135	1040.64815	-0.89615	-0.00046719	0.64578	0.00033667	-0.25037	-0.00013053	521.331486132729	83.706	1.1538	83.733	83.384	84.538	0.026558					45	26	2	0	0	0	0.024447	1	10362	10362		49.442	14.29	1	412860	+		12705	21256	8833	8851	14125	14125					0.12944943831053024
ELVVAYPY	8	Unmodified	_ELVVAYPY_					0	0	0		ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7266845703125	2	477.252569	952.490584	-0.32103	-0.00015321	-0.9673	-0.00046165	-1.2883	-0.00061486	477.2511626991837	26.891	0.389	26.723	26.42	26.809	-0.16816					10	8	2	0	0	0	0.027866	1	1398	1398		19.36	0	1	37726			12706	3895	8834	8852	14126	14126					0.012438642916663412
ELVVGHSA	8	Unmodified	_ELVVGHSA_					0	0	0		ENST00000355528.8_1_17:80721841-80721916:+|nuORF	ENST00000355528.8_1_17:80721841-80721916:+|nuORF	ENST00000355528.8_1_17:80721841-80721916:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.248779296875	2	406.21906	810.423567	0.98186	0.00039885	-0.52628	-0.00021378	0.45558	0.00018506	406.2190141181581	87.792	0.34959	87.757	87.693	88.042	-0.035362					16	8	3	0	0	0	0.027866	1	11049	11049		33.516	6.8227	1	619580			12707	12649	8835	8853	14127	14127					0.010772538005767274
ELVVGLTK	8	Unmodified	_ELVVGLTK_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.73797607421875	2	429.768386	857.522219	0.14589	6.2701E-05	-1.49	-0.00064035	-1.3441	-0.00057765	429.76774174689047	39.823	0.11574	39.674	39.591	39.707	-0.1497					4	2	2	0	0	0	0.027866	1	3390	3390		7.6903	0	1	34174			12708	1752	8836	8854	14128	14128					0.08775857045611701
ELVVLEQFV	9	Unmodified	_ELVVLEQFV_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;nc|ENSG00000172466|P17028-2|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.327392578125	2	538.305332	1074.59611	-0.45237	-0.00024351	2.5608	0.0013785	2.1084	0.001135	538.306891601896	99.597	0.47224	99.607	99.312	99.785	0.010239					24	10	3	0	0	0	0.024427	1	12717	12717		51.335	5.3835	1	194630			12709	8279	8837	8855	14129	14129					0.06179780417301117
ELVVSRSLY	9	Unmodified	_ELVVSRSLY_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.297119140625	2	533.300581	1064.58661	-0.85709	-0.00045709	0.35307	0.00018829	-0.50403	-0.0002688	533.3005916861858	61.349	0.858	61.092	60.848	61.706	-0.25725					56	20	5	0	0	0	0.42604	1	6855	6855		64.207	0	1	1521700	+		12710	23404	8838	8856	14130	14130					0.056900121317767116
ELVWLKIT	8	Unmodified	_ELVWLKIT_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.277099609375	2	501.305136	1000.59572	0.70747	0.00035466	-3.2202	-0.0016143	-2.5127	-0.0012596	501.30228604966135	64.226	1.6691	64.272	63.794	65.463	0.045502					79	45	3	0	0	0	0.027866	1	7533	7533		58.782	0	1	1944800	+		12711	25638	8839	8857	14131	14131					0.09544405488077246
ELVWWKCKKWA	11	Unmodified	_ELVWWKCKKWA_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;ENSG00000133704|ENST00000256079|IPO8;IPO8|p.S278Afs*17|1|0.29|ENSG00000133704|chr12:30674067-30674067|T/-|frameshift_variant;IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.76837158203125	3	492.932197	1475.77476	0.6685	0.00032953	-2.5011	-0.0012329	-1.8326	-0.00090335	493.26491829847157	52.936	0.40012	52.677	52.482	52.882	-0.25838					10	9	2	0	0	0	0.024821	1	5538	5538		9.6461	0	1	96390			12712	4725	8840	8858	14132	14132					0.05590546784515027
ELVYRYFS	8	Unmodified	_ELVYRYFS_					0	0	0			REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.776611328125	2	538.7742	1075.53385	-1.2637	-0.00068087	3.8694	0.0020848	2.6057	0.0014039	538.7762689677453	57.457	1.0107	57.224	56.691	57.702	-0.23363					48	26	3	0	0	0	0.80469	1	6258	6258		58.782	0.55203	1	1868400	+		12713	23678	8841	8859	14133	14133					-0.0008994593106308457
ELVYTAEGEE	10	Unmodified	_ELVYTAEGEE_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.2825927734375	2	570.258776	1138.503	-1.1484	-0.00065487	-3.5795	-0.0020412	-4.7279	-0.0026961	570.2569783267334	80.139	0.24823	79.987	79.843	80.091	-0.15168					7	5	2	0	0	0	0.03519	1	9899	9899		26.693	5.746	1	56023			12714	10187	8842	8860	14134	14134					-0.06071188826626894
ELVYYNVHL	9	Unmodified	_ELVYYNVHL_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.8230590820312	2	575.300581	1148.58661	-0.98642	-0.00056749	-3.4933	-0.0020097	-4.4797	-0.0025772	575.2985666083835	44.775	0.61301	44.626	44.288	44.901	-0.1488					31	17	3	0	0	0	0.02435	1	4325	4325		42.396	0	1	336890	+		12715	27155	8843	8861	14135	14135					0.01826012131778043
ELWCYEIAL	9	Unmodified	_ELWCYEIAL_					0	0	0			REV__ENST00000473311.5_1_3:183905710-183905954:+|nuORF	REV__ENST00000473311.5_1_3:183905710-183905954:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.2757568359375	2	570.275718	1138.53688	0.071144	4.0572E-05	2.7257	0.0015544	2.7968	0.0015949	570.2770157663105	106.74	0.67593	106.62	106.43	107.1	-0.1238					32	21	2	0	0	0	0.59099	1	13283	13283		53.351	9.2347	1	267710	+		12716	33232	8844	8862	14136	14136					-0.026844388685503873
ELWCYEIAL	9	Unmodified	_ELWCYEIAL_					0	0	0			REV__ENST00000473311.5_1_3:183905710-183905954:+|nuORF	REV__ENST00000473311.5_1_3:183905710-183905954:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	570.275718	1138.53688	0.071144	4.0572E-05	2.7257	0.0015544	2.7968	0.0015949	570.2770157663105	106.74	0.67593	106.62	106.43	107.1	-0.1238	-0.058372	-0.00086411	NaN	53.351	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267710	+		12717	33232	8844	8862							-0.026844388685503873
ELWCYEIAL	9	Unmodified	_ELWCYEIAL_					0	0	0			REV__ENST00000473311.5_1_3:183905710-183905954:+|nuORF	REV__ENST00000473311.5_1_3:183905710-183905954:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	570.275718	1138.53688	-1.0879	-0.00062038	3.8397	0.0021897	2.7519	0.0015693	570.2777667154613	106.87	0.694	106.74	106.47	107.17	-0.1346	0.058372	0.00040654	NaN	53.351	51	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154820	+		12718	33232	8844	8862							-0.026844388685503873
ELWDWDMV	8	Unmodified	_ELWDWDMV_					0	0	0		ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1;ENST00000546727.5_1_12:113545343-113557136:-|nuORF;ENST00000548972.5_1_12:113545343-113573291:-|nuORF;ENST00000551051.5_1_12:113546023-113565713:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.8084106445312	2	547.236593	1092.45863	-0.0017199	-9.4118E-07	-1.1838	-0.00064783	-1.1855	-0.00064877	547.235802002986	54.202	0.51445	54.3	54.077	54.591	0.098015					23	14	2	0	0	0	0.027866	1	5809	5809		33.516	1.5607	1	233320			12719	3109	8845	8863	14137	14137					-0.08389871453778142
ELWEQVHRVK	10	Unmodified	_ELWEQVHRVK_					0	0	0			REV__ACYP1|p.M62V|1|0.27|ENSG00000119640|chr14:75053560-75053560|T/C|missense_variant	REV__ACYP1|p.M62V|1|0.27|ENSG00000119640|chr14:75053560-75053560|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2655944824219	3	441.910449	1322.70952	-0.65552	-0.00028968	-2.2828	-0.0010088	-2.9384	-0.0012985	441.90927330098316	39.63	0.55721	39.654	39.421	39.978	0.023727					34	15	3	0	0	0	0.03519	1	3349	3349		34.087	1.0471	1	568010	+		12720	19059	8846	8864	14138	14138					0.06107268583014047
ELWIVSAW	8	Unmodified	_ELWIVSAW_					0	0	0		ENST00000264515.10_1_1:205084049-205085005:-|nuORF	ENST00000264515.10_1_1:205084049-205085005:-|nuORF	ENST00000264515.10_1_1:205084049-205085005:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2939147949219	2	502.26601	1002.51747	-0.14134	-7.0991E-05	-3.1443	-0.0015793	-3.2857	-0.0016503	502.2661887053951	54.216	0.40807	54.018	53.798	54.206	-0.19739					16	11	2	0	0	0	0.027866	1	5707	5707		44.531	0	1	233470			12721	11562	8847	8865	14139	14139					0.016309729028535003
ELWKTPQN	8	Unmodified	_ELWKTPQN_					0	0	0		ENST00000548869.1_1_12:110906313-110924532:+|nuORF;ENST00000538285.6_1_12:110906680-110924532:+|nuORF;ENSG00000204856|ENST00000377673|FAM216A	ENST00000548869.1_1_12:110906313-110924532:+|nuORF	ENST00000548869.1_1_12:110906313-110924532:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2878723144531	2	508.263999	1014.51345	-0.26766	-0.00013604	1.3421	0.00068213	1.0744	0.00054609	508.2648381987441	62.023	0.51069	61.796	61.573	62.084	-0.22663					23	13	2	0	0	0	0.027866	1	7158	7158		37.159	0	1	836720			12722	10384	8848	8866	14140	14140					0.006768834091417375
ELWNQGEKY	9	Unmodified	_ELWNQGEKY_					0	0	0			REV__ENST00000591406.1_1_18:56822908-56825914:+|nuORF	REV__ENST00000591406.1_1_18:56822908-56825914:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.302978515625	2	583.77747	1165.54039	-0.67467	-0.00039386	-3.3633	-0.0019634	-4.038	-0.0023573	583.7754751598374	65.172	0.40577	64.937	64.728	65.133	-0.2345					17	9	2	0	0	0	0.024539	1	7426	7426		14.865	0	1	291230	+		12723	26035	8849	8867	14141	14141					-0.03576052770313254
ELWNTDSR	8	Unmodified	_ELWNTDSR_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;ENST00000546491.1_1_12:99093275-99106252:+|nuORF	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7649230957031	2	510.740888	1019.46722	-0.0034113	-1.7423E-06	0.95979	0.0004902	0.95638	0.00048846	510.74103127506504	25.512	0.24564	25.592	25.377	25.622	0.08009					10	5	3	0	0	0	0.027866	1	1152	1152		27.882	1.1893	1	34521			12724	103	8850	8868	14142	14142					-0.041731814929448774
ELWQEPNP	8	Unmodified	_ELWQEPNP_					0	0	0			REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3030700683594	2	506.740357	1011.46616	-0.386	-0.0001956	2.4727	0.001253	2.0867	0.0010574	506.74130199386826	56.947	0.26801	56.783	56.641	56.909	-0.16431					11	7	2	0	0	0	0.027866	1	6355	6355		35.152	0	1	134990	+		12725	24392	8851	8869	14143	14143					-0.03911395861860001
ELWQTTVQ	8	Unmodified	_ELWQTTVQ_					0	0	0			REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7580871582031	2	502.756007	1003.49746	0.081103	4.0775E-05	0.9811	0.00049326	1.0622	0.00053403	502.75604077945206	37.013	1.0971	36.95	36.628	37.725	-0.063385					62	29	4	0	0	0	0.50717	1	2969	2969		84.916	2.675	1	2396700	+		12726	24067	8852	8870	14144	14144					-0.004148228277699673
ELWRCFTP	8	Unmodified	_ELWRCFTP_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7960205078125	2	526.25512	1050.49569	-0.55754	-0.00029341	2.7784	0.0014622	2.2209	0.0011688	526.2564098586923	52.017	0.7163	51.87	51.609	52.326	-0.14735					38	19	3	0	0	0	0.027866	1	5572	5572		29.15	0	1	802350	+		12727	20285	8853	8871	14145	14145					-0.0275415511734991
ELWVGKQP	8	Unmodified	_ELWVGKQP_					0	0	0		ENST00000409858.7_1_9:139977177-139977723:+|nuORF	ENST00000409858.7_1_9:139977177-139977723:+|nuORF	ENST00000409858.7_1_9:139977177-139977723:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7350769042969	2	478.763635	955.512717	0.3305	0.00015823	3.3307	0.0015946	3.6612	0.0017528	478.7651049549923	59.849	0.71533	59.672	59.401	60.116	-0.1761					26	18	2	0	0	0	0.027866	1	6676	6676		31.955	0	1	620630			12728	13794	8854	8872	14146	14146					0.033180887601020004
ELWVRDIN	8	Unmodified	_ELWVRDIN_					0	0	0		ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.291259765625	2	522.777274	1043.53999	-0.60458	-0.00031606	-0.74037	-0.00038705	-1.345	-0.00070311	522.7785496985274	56.84	0.58524	56.676	56.459	57.045	-0.16431					31	16	3	0	0	0	0.027866	1	6352	6352		53.351	2.1588	1	365850			12729	3270	8855	8873	14147	14147					0.019965723004816027
ELYCWRAR	8	Unmodified	_ELYCWRAR_					0	0	0			REV__ENST00000523245.1_1_8:86129602-86132627:-|nuORF	REV__ENST00000523245.1_1_8:86129602-86132627:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3427124023438	2	548.771468	1095.52838	-0.53539	-0.00029381	2.1015	0.0011533	1.5662	0.00085946	548.772627271823	50.483	1.087	50.334	49.636	50.723	-0.14916					49	31	2	0	0	0	0.027866	1	5206	5206		7.6903	0	1	148610	+		12730	34352	8856	8874	14148	14148					-0.015559479945295607
ELYCYLLY	8	Unmodified	_ELYCYLLY_					0	0	0		nc|ENSG00000105185|O14737-2|PDCD5	nc|ENSG00000105185|O14737-2|PDCD5	nc|ENSG00000105185|O14737-2|PDCD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2904663085938	2	540.259536	1078.50452	-0.87979	-0.00047531	2.2107	0.0011943	1.3309	0.00071901	540.261086498827	66.425	0.15016	66.202	66.145	66.295	-0.22374					5	3	2	0	0	0	0.027866	1	7636	7636		52.299	16.681	1	90945			12731	18146	8857	8875	14149	14149					-0.03159226271554871
ELYDKWSAR	9	Unmodified	_ELYDKWSAR_					0	0	0			REV__ENSG00000152213|ENST00000282026|ARL11	REV__ENSG00000152213|ENST00000282026|ARL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.82421875	2	584.293288	1166.57202	-0.39185	-0.00022895	-2.4435	-0.0014277	-2.8353	-0.0016567	584.2912276909849	75.548	0.20117	75.275	75.144	75.345	-0.27266					6	4	2	0	0	0	0.024484	1	8931	8931		23.523	0	1	106610	+		12732	24822	8858	8876	14150	14150					-0.004600600163939816
ELYEQFPK	8	Unmodified	_ELYEQFPK_					0	0	0			REV__CLTC-VMP1|9|fusion;REV__VMP1-RPS6KB1|1|fusion	REV__CLTC-VMP1|9|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2391357421875	2	527.266207	1052.51786	0.44049	0.00023226	2.2286	0.0011751	2.6691	0.0014073	527.2671299747374	68.234	1.0574	68.253	67.707	68.764	0.018921					45	27	2	0	0	0	0.027866	1	8106	8106		37.812	7.3079	1	149200	+		12733	19500;20265	8859	8877	14151	14151					-0.006296521679587386
ELYFLTKP	8	Unmodified	_ELYFLTKP_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3135681152344	2	505.781493	1009.54843	-1.3631	-0.00068945	-4.1768	-0.0021125	-5.5399	-0.002802	506.28085240443136	65.077	1.05	64.814	64.155	65.205	-0.2626					34	27	2	0	0	0	0.027866	1	7575	7575		35.618	3.6634	1	129530	+		12734	26069	8860	8878	14152	14152					0.044041262170935624
ELYFLTKP	8	Unmodified	_ELYFLTKP_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.781493	1009.54843	-1.1501	-0.00058168	-3.2777	-0.0016578	-4.4278	-0.0022395	506.281712638731	64.795	0.47668	64.795	64.578	65.055	0	-0.0098202	0.00050929	NaN	35.618	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101150	+		12735	26069	8860	8878							0.044041262170935624
ELYFSHSRA	9	Unmodified	_ELYFSHSRA_					0	0	0			REV__ENST00000455230.5_1_2:37458781-37459291:+|nuORF	REV__ENST00000455230.5_1_2:37458781-37459291:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.7990112304688	2	555.272355	1108.53016	-0.26654	-0.000148	-1.7969	-0.00099777	-2.0634	-0.0011458	555.271663523965	40.803	0.41296	40.826	40.663	41.076	0.023006					18	11	2	0	0	0	0.024374	1	3602	3602		32.812	3.6424	1	236870	+		12736	32775	8861	8879	14153	14153					-0.019766157048934474
ELYHPCPD	8	Unmodified	_ELYHPCPD_					0	0	0			REV__ENST00000331289.4_1_11:2289798-2289960:-|nuORF	REV__ENST00000331289.4_1_11:2289798-2289960:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.25628662109375	2	487.207835	972.401117	-0.47751	-0.00023265	3.9155	0.0019076	3.4379	0.001675	487.20960492732945	53.119	0.44818	52.972	52.72	53.168	-0.14723					19	11	3	0	0	0	0.027866	1	5705	5705		33.516	0	1	159280	+		12737	30471	8862	8880	14154	14154					-0.086187136593594
ELYHRRLPQ	9	Unmodified	_ELYHRRLPQ_					0	0	0		ENST00000368733.3_1_1:153362913-153363549:-|nuORF	ENST00000368733.3_1_1:153362913-153363549:-|nuORF	ENST00000368733.3_1_1:153362913-153363549:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5111389160156	3	404.55964	1210.65709	0.52673	0.00021309	2.2007	0.00089031	2.7274	0.0011034	404.5603978086711	32.284	0.30536	32.047	31.91	32.216	-0.23667					10	6	2	0	0	0	0.024484	1	2213	2213		17.468	0	1	148900			12738	12904	8863	8881	14155	14155					0.060187302400890985
ELYISHLFL	9	Unmodified	_ELYISHLFL_					0	0	0			REV__ENST00000566685.1_1_16:23478014-23478370:-|nuORF	REV__ENST00000566685.1_1_16:23478014-23478370:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.802734375	2	567.813325	1133.6121	-1.5879	-0.0009016	0.28677	0.00016283	-1.3011	-0.00073877	567.8135779525915	80.959	1.1208	80.983	80.656	81.777	0.023911					50	27	3	0	0	0	0.023355	1	10066	10066		65.803	0	1	287170	+		12739	30168	8864	8882	14156	14156					0.050634866541713563
ELYKAKLQAA	10	Unmodified	_ELYKAKLQAA_					0	0	0			REV__nc|ENSG00000132635|Q9H1Q7-3|PCED1A	REV__nc|ENSG00000132635|Q9H1Q7-3|PCED1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.7843627929688	2	567.829506	1133.64446	-0.77071	-0.00043763	3.7524	0.0021307	2.9817	0.0016931	567.8316423186986	94.996	0.6519	95	94.617	95.269	0.0041199					18	14	2	0	0	0	0.03519	1	11970	11970		26.693	11.051	1	36277	+		12740	36663	8865	8883	14157	14157					0.0829827405721062
ELYKKASLQG	10	Unmodified	_ELYKKASLQG_					0	0	0			REV__nc|ENSG00000146469|P01282-2|VIP	REV__nc|ENSG00000146469|P01282-2|VIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7738037109375	2	568.819138	1135.62372	0.60873	0.00034626	2.7744	0.0015781	3.3831	0.0019244	568.820606377502	78.167	0.6757	77.935	77.626	78.302	-0.23283					47	15	4	0	0	0	0.03519	1	9316	9316		54.722	8.2656	1	1020900	+		12741	24495	8866	8884	14158	14158					0.06133683677512636
ELYKLLRH	8	Unmodified	_ELYKLLRH_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.317138671875	2	536.319109	1070.62366	-0.089885	-4.8207E-05	0.64615	0.00034654	0.55627	0.00029834	536.3169550001763	20.916	0.77435	20.741	20.437	21.211	-0.17486					42	15	4	0	0	0	1.0009	1	600	600		37.159	12.956	1	665100	+		12742	20389	8867	8885	14159	14159					0.09117728468208952
ELYKLLRH	8	Unmodified	_ELYKLLRH_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.316650390625	2	536.319109	1070.62366	0.030907	1.6576E-05	1.5943	0.00085505	1.6252	0.00087162	536.3169900435802	21.036	1.2754	20.84	20.187	21.462	-0.19577					43	25	3	0	0	0	0.95417	1	623	623		44.531	11.015	1	601840	+		12743	20389	8867	8885	14160	14160					0.09117728468208952
ELYNSLKPVS	10	Unmodified	_ELYNSLKPVS_					0	0	0		ENST00000437147.7_1_X:70679048-70680484:+|nuORF	ENST00000437147.7_1_X:70679048-70680484:+|nuORF	ENST00000437147.7_1_X:70679048-70680484:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.784423828125	2	575.311146	1148.60774	0.40775	0.00023458	-0.19037	-0.00010952	0.21738	0.00012506	575.3110475582556	52.919	0.36127	52.66	52.482	52.843	-0.25838					17	8	3	0	0	0	0.03519	1	5515	5515		37.812	0.65241	1	612170			12744	14292	8868	8886	14161	14161					0.039379774406370416
ELYQKEVS	8	Unmodified	_ELYQKEVS_					0	0	0		ENSG00000062822|ENST00000440232|POLD1;ENST00000596221.1_1_19:50920282-50921201:+|nuORF;ENST00000597963.5_1_19:50919583-50921201:+|nuORF	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.255859375	2	498.25584	994.497126	-1.1287	-0.00056237	1.198	0.00059693	0.069363	3.4561E-05	498.25632819035235	79.626	0.75433	79.454	79.109	79.863	-0.17226					46	17	3	0	0	0	0.42327	1	9858	9858		94.006	0.81096	1	1051400			12745	1254	8869	8887	14162	14162					-0.0003424254761057455
ELYQNGQVMS	10	Unmodified	_ELYQNGQVMS_					0	0	0			REV__ENST00000283195.10_1_2:109380362-109380437:+|nuORF	REV__ENST00000283195.10_1_2:109380362-109380437:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.3231811523438	2	584.768788	1167.52302	-1.4879	-0.00087006	3.6333	0.0021247	2.1455	0.0012546	584.7709469187388	44.591	0.64983	44.38	44.221	44.871	-0.21109					25	16	2	0	0	0	0.03519	1	4188	4188		36.447	13.404	1	462470	+		12746	29903	8870	8888	14163	14163					-0.05403716367641209
ELYQPLLK	8	Unmodified	_ELYQPLLK_					0	0	0			REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7926330566406	2	502.294768	1002.57498	-0.089949	-4.5181E-05	-1.2927	-0.0006493	-1.3826	-0.00069448	502.29391729171346	63.857	0.91287	63.599	63.276	64.188	-0.25824					38	23	3	0	0	0	0.027866	1	7295	7295		35.618	6.4687	1	427000	+		12747	26278	8871	8889	14164	14164					0.07379815108424737
ELYSAVFRA	9	Unmodified	_ELYSAVFRA_					0	0	0			REV__ENST00000471337.5_1_1:45805924-45808422:+|nuORF	REV__ENST00000471337.5_1_1:45805924-45808422:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.7907104492188	2	528.279649	1054.54475	0.19717	0.00010416	-0.95066	-0.00050222	-0.75349	-0.00039806	528.2793801726185	104.21	1.9057	104.2	102.94	104.85	-0.0032196					59	47	2	0	0	0	0.024261	1	13371	13371		64.207	21.811	1	370050	+		12748	23318	8872	8890	14165	14165					0.0196545644323578
ELYSQLKAKE	10	Unmodified	_ELYSQLKAKE_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.55462646484375	3	403.555561	1207.64485	-0.011524	-4.6505E-06	-1.7494	-0.00070596	-1.7609	-0.00071061	403.55476099232806	22.42	0.93721	22.218	21.903	22.84	-0.20199					63	19	5	0	0	0	1.0545	1	757	757		38.754	1.5945	1	1373800			12749	4256;18250;18249	8873	8891	14166	14166					0.04933648986366279
ELYSVRVL	8	Unmodified	_ELYSVRVL_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2684326171875	2	489.784567	977.554582	0.035228	1.7254E-05	-0.76232	-0.00037337	-0.72709	-0.00035612	489.78399242254795	41.73	0.80056	41.499	41.196	41.997	-0.2303					56	21	5	0	0	0	0.027866	1	3682	3682		40.573	0	1	1690400	+		12750	23210	8874	8892	14167	14167					0.06490644448626881
ELYTTHGL	8	Unmodified	_ELYTTHGL_					0	0	0		ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.73138427734375	2	467.23745	932.460347	0.62199	0.00029062	3.2264	0.0015075	3.8484	0.0017981	467.2388760592996	59.635	1.0773	59.435	59.209	60.286	-0.20016					38	28	2	0	0	0	0.027866	1	6918	6918		40.573	0	1	339860			12751	6855	8875	8893	14168	14168					-0.008584943735286288
ELYVDLLVC	9	Unmodified	_ELYVDLLVC_					0	0	0			REV__ENSG00000100296|ENST00000490103|THOC5	REV__ENSG00000100296|ENST00000490103|THOC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7616577148438	2	533.778093	1065.54163	-0.90656	-0.0004839	3.8701	0.0020658	2.9635	0.0015819	533.780008080299	29.004	0.56107	28.831	28.681	29.242	-0.17258					15	12	2	0	0	0	0.024466	1	1744	1744		12.207	0	1	116400	+		12752	21083	8876	8894	14169	14169					0.01148445274225196
ELYVQLHG	8	Unmodified	_ELYVQLHG_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENST00000488474.1_1_7:736619-751142:-|nuORF	ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2652893066406	2	479.753267	957.491981	-0.33274	-0.00015963	-4.2257	-0.0020273	-4.5585	-0.0021869	479.75141578594844	28.793	1.0033	28.793	28.502	29.506	-0.00046921					38	24	3	0	0	0	0.027866	1	1754	1754		19.36	0	1	219320			12753	9701	8877	8895	14170	14170					0.011534983804381227
ELYVYDQY	8	Unmodified	_ELYVYDQY_					0	0	0			REV__ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	REV__ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3040161132812	2	546.747847	1091.48114	-1.1029	-0.00060299	-2.5867	-0.0014143	-3.6896	-0.0020173	546.7461766863344	37.484	0.4338	37.275	37.075	37.509	-0.2092					23	10	3	0	0	0	0.027866	1	2975	2975		20.947	4.242	1	204610	+		12754	19163	8878	8896	14171	14171					-0.06093948784518943
EMALQHLELL	10	Unmodified	_EMALQHLELL_					0	0	0			REV__ENST00000463135.1_1_X:37300766-37301252:+|nuORF	REV__ENST00000463135.1_1_X:37300766-37301252:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	598.8177490234375	2	598.820824	1195.62709	-1.3413	-0.00080322	-1.7933	-0.0010739	-3.1347	-0.0018771	598.8195673752847	74.187	1.3247	74.197	73.924	75.249	0.0096588					75	31	3	0	0	0	0.50517	1	8997	8997		87.696	5.3914	1	1556600	+		12755	32925	8879	8897	14172	14172					0.03710610459847885
EMAMFITNV	9	Unmodified	_EMAMFITNV_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7803955078125	2	528.248646	1054.48274	0.24057	0.00012708	-1.7748	-0.00093754	-1.5342	-0.00081046	528.2479700726742	81.966	1.1067	81.738	81.188	82.295	-0.22891					35	25	2	0	0	0	0.024021	1	9887	9887		68.787	10.976	1	125230	+		12756	27755	8880	8898	14173	14173					-0.04232354291775664
EMAQKKRL	8	Unmodified	_EMAQKKRL_					0	0	0			REV__nc|ENSG00000131183|Q06495-2|SLC34A1	REV__nc|ENSG00000131183|Q06495-2|SLC34A1	MSMS	OPSCC_39_ClassI_Rep-1	1	502.2869567871094	2	502.289494	1002.56443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.799	1	62.799	62.299	63.299	0								0	0	0	0.42824	1	7319	7319		63.306	2.3343	1		+		12757	36657	8881	8899	14174	14174					0.06325509182340738
EMAQQSRSL	9	Unmodified	_EMAQQSRSL_					0	0	0		ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2577514648438	2	525.255848	1048.49714	-0.17452	-9.1669E-05	4.2849	0.0022507	4.1104	0.002159	525.2579152756163	63.534	1.0572	63.282	62.893	63.95	-0.25141					95	28	5	0	0	0	0.17822	1	7411	7411		93.195	0.052222	1	5669900			12758	978	8882	8900	14175	14175					-0.0251656581926909
EMASEVPNR	9	Unmodified	_EMASEVPNR_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2653198242188	2	516.742573	1031.47059	-0.48816	-0.00025225	0.89675	0.00046339	0.4086	0.00021114	517.244121164212	57.216	0.23432	57.216	57.111	57.345	0					6	5	2	0	0	0	0.021088	1	6412	6412		102.77	40.666	1	61888	+		12759	24677	8883	8901	14176	14176					-0.043882547106022685
EMAVWMLDE	9	Oxidation (M)	_EMAVWM(Oxidation (M))LDE_		EMAVWM(1)LDE		EM(-42)AVWM(42)LDE	0	0	1			REV__nc|ENSG00000108852|Q14168-4|MPP2	REV__nc|ENSG00000108852|Q14168-4|MPP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2420043945312	2	570.241018	1138.46748	1.0107	0.00057632	2.8254	0.0016111	3.836	0.0021875	570.2424589690983	77.64	0.79704	77.397	77.112	77.909	-0.24232					41	18	3	0	0	0	0.70186	1	9241	9241		45.952	6.6991	2	1538800	+		12760	36557	8884	8902	14177	14177		967			-0.09621265879627572
EMAWSDEVNVT	11	Unmodified	_EMAWSDEVNVT_					0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.777587890625	2	640.77681	1279.53907	0.39754	0.00025473	0.7476	0.00047905	1.1451	0.00073378	640.7772868742064	51.806	0.95059	51.659	51.336	52.287	-0.14735					71	26	4	0	0	0	0.94988	1	5507	5507		47.96	8.7067	1	5931800	+		12761	22452	8885	8903	14178	14178					-0.08952054921405761
EMAWSDEVNVT	11	Unmodified	_EMAWSDEVNVT_					0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	640.7776489257812	2	640.77681	1279.53907	-0.86914	-0.00055693	2.1032	0.0013477	1.2341	0.00079078	640.7781588986275	51.524	0.97329	51.611	51.302	52.275	0.087006					72	26	4	0	0	0	0.84811	1	5406	5406		54.776	1.8396	1	4963500	+		12762	22452	8885	8903	14179	14179					-0.08952054921405761
EMAWSDEVNVT	11	Unmodified	_EMAWSDEVNVT_					0	0	0			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.77783203125	2	640.77681	1279.53907	-1.4331	-0.00091827	2.3606	0.0015126	0.92754	0.00059435	640.7785223008528	51.746	1.5197	51.627	51.242	52.761	-0.11875					95	39	3	0	0	0	0.9728	1	5312	5312		42.864	2.0861	1	29765000	+		12763	22452	8885	8903	14180	14180					-0.08952054921405761
EMCIIDYKG	9	Unmodified	_EMCIIDYKG_					0	0	0			REV__ENST00000481157.1_1_12:65261855-65261975:-|nuORF	REV__ENST00000481157.1_1_12:65261855-65261975:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.24560546875	2	536.246103	1070.47765	-0.27638	-0.00014821	1.6502	0.00088489	1.3738	0.00073668	536.2468376031907	70.616	1.6351	70.344	69.994	71.63	-0.27185					57	41	2	0	0	0	0.89441	1	8221	8221		32.812	6.0163	1	3861800	+		12764	33446	8886	8904	14181	14181					-0.05476658154384495
EMCKVEPSF	9	Unmodified	_EMCKVEPSF_					0	0	0		ENST00000319074.5_1_14:23567535-23567673:+|nuORF	ENST00000319074.5_1_14:23567535-23567673:+|nuORF	ENST00000319074.5_1_14:23567535-23567673:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2346801757812	2	535.238278	1068.462	-0.82041	-0.00043911	0.681	0.00036449	-0.13941	-7.462E-05	535.2384151026295	67.352	0.78848	67.114	66.958	67.747	-0.23814					22	18	2	0	0	0	0.024495	1	7778	7778		26.693	7.3329	1	256280			12765	12178	8887	8905	14182	14182					-0.06948944671421486
EMDAALHYY	9	Oxidation (M)	_EM(Oxidation (M))DAALHYY_		EM(1)DAALHYY		EM(80)DAALHYY	0	0	1		ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140;ENST00000565298.5_1_16:1574507-1576156:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.2803955078125	2	564.736957	1127.45936	-0.13739	-7.7587E-05	0.18393	0.00010387	0.046546	2.6286E-05	564.7367783715172	47.191	0.45351	47.094	46.897	47.35	-0.096649					19	11	2	0	0	0	0.02309	1	4614	4614		79.939	11.455	1	250460			12766	9632	8888	8906	14183	14183		398			-0.09927076804751778
EMDAALHYY	9	Oxidation (M)	_EM(Oxidation (M))DAALHYY_		EM(1)DAALHYY		EM(52)DAALHYY	0	0	1		ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140;ENST00000565298.5_1_16:1574507-1576156:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2799682617188	2	564.736957	1127.45936	0.17231	9.731E-05	-0.40044	-0.00022614	-0.22813	-0.00012883	564.7367138795519	47.585	0.41332	47.316	47.05	47.463	-0.26939					20	10	2	0	0	0	0.024293	1	4648	4648		52.299	23.15	1	166940			12767	9632	8888	8906	14184	14184		398			-0.09927076804751778
EMDAALHYY	9	Oxidation (M)	_EM(Oxidation (M))DAALHYY_		EM(1)DAALHYY		EM(42)DAALHYY	0	0	1		ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140;ENST00000565298.5_1_16:1574507-1576156:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2792358398438	2	564.736957	1127.45936	-0.17905	-0.00010112	-0.41179	-0.00023255	-0.59084	-0.00033367	564.7365329072665	47.336	0.49308	47.142	46.923	47.416	-0.19387					20	12	2	0	0	0	0.024293	1	4618	4618		42.474	16.9	1	216140			12768	9632	8888	8906	14185	14185		398			-0.09927076804751778
EMDEDINDEG	10	Unmodified	_EMDEDINDEG_					0	0	0			REV__ENSG00000070444|ENST00000174618|MNT	REV__ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.7880249023438	2	583.711333	1165.40811	-0.54654	-0.00031902	-1.8347	-0.0010709	-2.3812	-0.0013899	583.7101120719574	65.316	0.94455	65.082	64.728	65.672	-0.2345					36	22	2	0	0	0	0.03519	1	7531	7531		18.262	0	1	66928	+		12769	20425	8889	8907	14186	14186					-0.16797490360113443
EMDINTILL	9	Unmodified	_EMDINTILL_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7986450195312	2	531.281	1060.54745	0.2723	0.00014467	-3.7149	-0.0019736	-3.4426	-0.001829	531.2789671609505	98.829	0.79361	98.825	98.596	99.389	-0.0038834					24	17	2	0	0	0	0.022657	1	12603	12603		98.629	13.469	1	40733	+		12770	20012	8890	8908	14187	14187					0.019595437858924925
EMDKESILR	9	Unmodified	_EMDKESILR_					0	0	0		ENSG00000163075|ENST00000413369|CFAP221;nc|ENSG00000163075|Q4G0U5-3|CFAP221;nc|ENSG00000163075|Q4G0U5-2|CFAP221;ENST00000413057.6_1_2:120317267-120388537:+|nuORF	ENSG00000163075|ENST00000413369|CFAP221	ENSG00000163075|ENST00000413369|CFAP221	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.8060302734375	2	560.786981	1119.55941	-0.31531	-0.00017682	1.7096	0.0009587	1.3942	0.00078187	560.7879279301393	57.285	0.41821	57.285	57.148	57.567	0					14	10	2	0	0	0	0.024344	1	6464	6464		45.972	0	1	543730			12771	7032	8891	8909	14188	14188					0.004411605290670195
EMDPILLTI	9	Oxidation (M)	_EM(Oxidation (M))DPILLTI_		EM(1)DPILLTI		EM(63)DPILLTI	0	0	1		nc|ENSG00000168685|P16871-2|IL7R;ENSG00000168685|ENST00000303115|IL7R	nc|ENSG00000168685|P16871-2|IL7R	nc|ENSG00000168685|P16871-2|IL7R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7855224609375	2	530.783376	1059.5522	-0.68753	-0.00036493	4.1805	0.0022189	3.4929	0.001854	530.7853996784322	53.253	0.87894	53.349	53.092	53.971	0.095669					76	24	4	0	0	0	0.43973	1	5695	5695		63.306	6.8725	1	4615300			12772	7854	8892	8910	14189	14189		322			0.024804279286399833
EMDPPNPEE	9	Unmodified	_EMDPPNPEE_					0	0	0		ENSG00000275113|ENST00000621907|GAGE2E;nc|ENSG00000189064|Q9UEU5|GAGE2D;nc|ENSG00000189064|Q13066|GAGE2B;ENSG00000189064|ENST00000362097|GAGE2A;nc|ENSG00000236362|P0DSO3|GAGE4;ENSG00000274274|ENST00000612958|GAGE13;ENSG00000237671|ENST00000420398|GAGE12C;ENSG00000236362|ENST00000440137|GAGE12F;ENSG00000227488|ENST00000405679|GAGE12D;ENSG00000224902|ENST00000381722|GAGE12H;ENSG00000224659|ENST00000442437|GAGE12J;ENSG00000216649|ENST00000381698|GAGE12E;ENSG00000215269|ENST00000445148|GAGE12G;ENSG00000205777|ENST00000381700|GAGE1;chrX:49551396-49561989|110|86.87|0.67|7.01|+|ENST00000639028|GAGE12F,GAGE12F	ENSG00000275113|ENST00000621907|GAGE2E	ENSG00000275113|ENST00000621907|GAGE2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.298583984375	2	529.210772	1056.40699	-1.6757	-0.00088682	-1.0032	-0.00053093	-2.679	-0.0014177	529.2100305820529	30.768	2.8916	30.768	28.778	31.669	0					111	70	3	0	0	0	0.02435	1	2017	2017		51.335	23.453	1	108400			12773	445	8893	8911	14190	14190					-0.11895659938363679
EMDPPNPEE	9	Unmodified	_EMDPPNPEE_					0	0	0		ENSG00000275113|ENST00000621907|GAGE2E;nc|ENSG00000189064|Q9UEU5|GAGE2D;nc|ENSG00000189064|Q13066|GAGE2B;ENSG00000189064|ENST00000362097|GAGE2A;nc|ENSG00000236362|P0DSO3|GAGE4;ENSG00000274274|ENST00000612958|GAGE13;ENSG00000237671|ENST00000420398|GAGE12C;ENSG00000236362|ENST00000440137|GAGE12F;ENSG00000227488|ENST00000405679|GAGE12D;ENSG00000224902|ENST00000381722|GAGE12H;ENSG00000224659|ENST00000442437|GAGE12J;ENSG00000216649|ENST00000381698|GAGE12E;ENSG00000215269|ENST00000445148|GAGE12G;ENSG00000205777|ENST00000381700|GAGE1;chrX:49551396-49561989|110|86.87|0.67|7.01|+|ENST00000639028|GAGE12F,GAGE12F	ENSG00000275113|ENST00000621907|GAGE2E	ENSG00000275113|ENST00000621907|GAGE2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2982177734375	2	529.210772	1056.40699	-0.61203	-0.00032389	-2.518	-0.0013326	-3.1301	-0.0016565	529.2092753644936	30.636	2.4943	30.71	29.642	32.136	0.074316					93	60	2	0	0	0	0.0242	1	1895	1895		69.628	20.186	1	110860			12774	445	8893	8911	14191	14191					-0.11895659938363679
EMDQLPVHSI	10	Unmodified	_EMDQLPVHSI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.7857055664062	2	584.786981	1167.55941	-1.3926	-0.00081437	-1.206	-0.00070523	-2.5986	-0.0015196	584.7863254287377	52.375	1.0876	52.375	51.702	52.789	0					84	28	4	0	0	0	0.67616	1	5633	5633		68.846	12.214	1	2305900			12775	4110	8894	8912	14192	14192					-0.017668394709517088
EMDQRDAITK	10	Unmodified	_EMDQRDAITK_					0	0	0		nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.18804931640625	3	402.864289	1205.57104	0.6435	0.00025924	4.1292	0.0016635	4.7727	0.0019228	403.2006097754917	36.745	0.12344	36.551	36.453	36.577	-0.19453					4	2	2	0	0	0	0.03519	1	2899	2899		22.562	0	1	51226			12776	18601	8895	8913	14193	14193					-0.023526424476358443
EMDVALSDK	9	Unmodified	_EMDVALSDK_					0	0	0		ENSG00000145375|ENST00000274008|SPATA5;nc|ENSG00000145375|Q8NB90-3|AFG2A;nc|ENSG00000145375|Q8NB90-2|AFG2A;ENST00000422835.2_1_4:123844270-124023368:+|nuORF	ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.27191162109375	2	504.239332	1006.46411	-0.20162	-0.00010166	1.5538	0.00078351	1.3522	0.00068184	504.2394840327685	56.835	1.0726	56.93	56.356	57.429	0.09531					86	29	5	0	0	0	0.024397	1	6311	6311		31.53	0	1	883770			12777	5812	8896	8914	14194	14194					-0.038861926619802034
EMDVMCAVIVE	11	Unmodified	_EMDVMCAVIVE_					0	0	0		ZNF417|p.F234Sfs*246|1|0.18|ENSG00000173480|chr19:57909577-57909577|A/-|frameshift_variant	ZNF417|p.F234Sfs*246|1|0.18|ENSG00000173480|chr19:57909577-57909577|A/-|frameshift_variant	ZNF417|p.F234Sfs*246|1|0.18|ENSG00000173480|chr19:57909577-57909577|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.742431640625	3	413.520366	1237.53927	1.766	0.00073028	1.0878	0.00044983	2.8538	0.0011801	413.52095240544776	36.907	0.87337	36.907	36.613	37.486	0					59	22	4	0	0	0	0.024759	1	3057	3057		23.378	1.5975	1	1866900			12778	38190	8897	8915	14195	14195					-0.07000094517411526
EMEALRSAY	9	Unmodified	_EMEALRSAY_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2344360351562	2	535.252774	1068.491	0.59111	0.00031639	-4.3923	-0.002351	-3.8012	-0.0020346	535.2505066462421	68.068	1.0727	67.813	67.194	68.267	-0.25516					30	25	3	0	0	0	0.024374	1	7792	7792		58.782	10.866	1	125400	+		12779	28526	8898	8916	14196	14196					-0.040510840507977264
EMEALRSAY	9	Unmodified	_EMEALRSAY_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.252774	1068.491	-0.093123	-4.9845E-05	-3.1419	-0.0016817	-3.235	-0.0017315	535.2510532575166	68.083	0.52203	67.849	67.636	68.158	-0.23376	0.018711	-1.2522E-05	NaN	58.782	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84942	+		12780	28526	8898	8916							-0.040510840507977264
EMEALRSAY	9	Unmodified	_EMEALRSAY_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.252774	1068.491	-0.26493	-0.0001418	-2.2565	-0.0012078	-2.5214	-0.0013496	535.2510722970891	68.067	0.44297	67.829	67.549	67.992	-0.23814	-0.001381	0.00093529	NaN	58.782	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109650	+		12781	28526	8898	8916							-0.040510840507977264
EMEAQNQEY	9	Unmodified	_EMEAQNQEY_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__A2A4G1	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.2273559570312	2	571.226953	1140.43935	-0.54646	-0.00031215	0.356	0.00020336	-0.19045	-0.00010879	571.2269527790403	38.821	0.78033	38.599	38.294	39.074	-0.22158					50	20	4	0	0	0	0.12914	1	3228	3228		104.06	50.705	1	1686500		+	12782	524	8899	8917	14197	14197					-0.1252487253534582
EMECILLFPL	10	Unmodified	_EMECILLFPL_					0	0	0			REV__nc|ENSG00000140955|Q8NCV1-2|ADAD2	REV__nc|ENSG00000140955|Q8NCV1-2|ADAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.2071533203125	3	403.208228	1206.60285	0.56755	0.00022884	-3.4456	-0.0013893	-2.878	-0.0011604	403.20684995404906	35.205	0.94285	35.205	34.906	35.849	0					64	24	3	0	0	0	0.96822	1	2715	2715		49.536	0	1	7756500	+		12783	36721	8900	8918	14198	14198					0.007816339819783025
EMEIDRILFE	10	Unmodified	_EMEIDRILFE_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF;nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	647.8197631835938	2	647.821021	1293.62749	-0.11852	-7.6782E-05	-2.5412	-0.0016462	-2.6597	-0.001723	647.8193193050613	82.716	0.81261	82.742	82.445	83.257	0.026558					51	18	4	0	0	0	0.65479	1	10262	10262		70.816	3.3225	1	695330			12784	3466	8901	8919	14199	14199					-0.0075801461091487
EMEIDRILFE	10	Unmodified	_EMEIDRILFE_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF;nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	647.821021	1293.62749	0.67192	0.00043528	-3.312	-0.0021456	-2.6401	-0.0017103	647.8187463243768	82.793	0.85858	82.793	82.492	83.351	0	0.10324	0.00018041	NaN	70.816	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	705470			12785	3466	8901	8919							-0.0075801461091487
EMEIDRILFE	10	Unmodified	_EMEIDRILFE_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF;nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	647.821021	1293.62749	2.8501	0.0018463	-5.5065	-0.0035672	-2.6564	-0.0017209	647.8173276858503	82.849	0.81526	82.739	82.422	83.238	-0.11006	0.049027	-0.0026629	NaN	70.816	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	760840			12786	3466	8901	8919							-0.0075801461091487
EMEIDRILFE	10	Unmodified	_EMEIDRILFE_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF;nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	647.821021	1293.62749	-1.8002	-0.0011662	-0.62597	-0.00040551	-2.4262	-0.0015718	647.8204444720214	82.827	0.69364	82.607	82.26	82.954	-0.22015	-0.082985	0.0036605	NaN	70.816	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249260			12787	3466	8901	8919							-0.0075801461091487
EMEIDRILFE	10	Unmodified	_EMEIDRILFE_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF;nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	647.821021	1293.62749	0.60136	0.00038957	-2.8244	-0.0018297	-2.223	-0.0014401	647.8188134978742	82.809	0.77614	82.628	82.374	83.15	-0.18079	-0.061833	0.0008122	NaN	70.816	39	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300090			12788	3466	8901	8919							-0.0075801461091487
EMEIDRILFE	10	Unmodified	_EMEIDRILFE_					0	0	0		ENST00000494623.1_1_2:86734536-86737699:-|nuORF;nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	ENST00000494623.1_1_2:86734536-86737699:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	647.821021	1293.62749	-1.0058	-0.00065156	-1.6614	-0.0010763	-2.6672	-0.0017279	647.8197506622124	82.77	0.90671	82.63	82.347	83.253	-0.14014	-0.0599	0.0023189	NaN	70.816	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260390			12789	3466	8901	8919							-0.0075801461091487
EMEIVMVKP	9	Unmodified	_EMEIVMVKP_					0	0	0			REV__nc|ENSG00000158887|P25189-2|MPZ	REV__nc|ENSG00000158887|P25189-2|MPZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8018798828125	2	538.279946	1074.54534	-0.43303	-0.00023309	-1.4686	-0.00079054	-1.9017	-0.0010236	538.2780602218222	94.118	0.3172	94.118	93.888	94.205	0					15	7	3	0	0	0	0.022484	1	11956	11956		106.42	24.175	1	81030	+		12790	36821	8902	8920	14200	14200					0.01104791776424463
EMELKLLRS	9	Unmodified	_EMELKLLRS_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8322143554688	2	559.815541	1117.61653	-1.3782	-0.00077155	1.7806	0.0009968	0.40236	0.00022525	559.8164202062194	79.729	1.0052	79.557	79.233	80.239	-0.17226					34	20	2	0	0	0	0.024397	1	9816	9816		39.253	0	1	503720	+		12791	22195	8903	8921	14201	14201					0.06242627805431766
EMELKPEED	9	Unmodified	_EMELKPEED_					0	0	0			REV__PCLO|p.E1698K|1|0.23|ENSG00000186472|chr7:82955861-82955861|C/T|missense_variant	REV__PCLO|p.E1698K|1|0.23|ENSG00000186472|chr7:82955861-82955861|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2658081054688	2	560.247354	1118.48016	-0.80014	-0.00044828	2.4291	0.0013609	1.629	0.00091262	560.249097914158	83.766	0.65095	83.792	83.512	84.162	0.026558					19	14	2	0	0	0	0.024381	1	10412	10412		55.504	7.5886	1	65479	+		12792	37362	8904	8922	14202	14202					-0.07434531215722018
EMESKINFP	9	Unmodified	_EMESKINFP_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3101196289062	2	547.762975	1093.5114	0.1175	6.4361E-05	-4.1604	-0.0022789	-4.0429	-0.0022145	547.7606391539102	63.575	0.33331	63.316	63.162	63.495	-0.25824					13	8	2	0	0	0	0.024381	1	7192	7192		37.159	0	1	112960			12793	8100	8905	8923	14203	14203					-0.031619133909771335
EMEVDIWPL	9	Unmodified	_EMEVDIWPL_					0	0	0		ENST00000397498.8_1_17:79648505-79648598:-|nuORF	ENST00000397498.8_1_17:79648505-79648598:-|nuORF	ENST00000397498.8_1_17:79648505-79648598:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7815551757812	2	566.273175	1130.5318	0.56849	0.00032192	-1.0911	-0.00061787	-0.52263	-0.00029595	566.272367362263	78.119	0.82314	77.927	77.683	78.506	-0.19211					25	19	2	0	0	0	0.024436	1	9699	9699		38.806	0	1	172390			12794	13596	8906	8924	14204	14204					-0.028247427311725914
EMEVDIWPL	9	Unmodified	_EMEVDIWPL_					0	0	0		ENST00000397498.8_1_17:79648505-79648598:-|nuORF	ENST00000397498.8_1_17:79648505-79648598:-|nuORF	ENST00000397498.8_1_17:79648505-79648598:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	566.273175	1130.5318	-0.59455	-0.00033668	0.71334	0.00040395	0.11879	6.7268E-05	566.272843377856	77.916	0.52979	77.916	77.672	78.202	0	-0.03005	0.00079255	NaN	30.504	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98777			12795	13596	8906	8924							-0.028247427311725914
EMEVDIWPL	9	Unmodified	_EMEVDIWPL_					0	0	0		ENST00000397498.8_1_17:79648505-79648598:-|nuORF	ENST00000397498.8_1_17:79648505-79648598:-|nuORF	ENST00000397498.8_1_17:79648505-79648598:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	566.273175	1130.5318	-1.1352	-0.00064284	0.17488	9.903E-05	-0.96033	-0.00054381	566.2731279328168	77.987	0.57658	78.002	77.739	78.315	0.015907	0.056552	0.00018271	NaN	30.504	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107810			12796	13596	8906	8924							-0.028247427311725914
EMEVEERAE	9	Unmodified	_EMEVEERAE_					0	0	0		ENSG00000276293|ENST00000619039|PIP4K2B	ENSG00000276293|ENST00000619039|PIP4K2B	ENSG00000276293|ENST00000619039|PIP4K2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2791748046875	2	561.242603	1120.47065	0.7945	0.00044591	-1.7003	-0.00095426	-0.90577	-0.00050835	561.2411504660704	85.033	0.24195	84.874	84.738	84.98	-0.15869					10	5	3	0	0	0	0.024506	1	10299	10299		10.866	0	1	114290			12797	11049	8907	8925	14205	14205					-0.08476299501262474
EMEYGNVYF	9	Unmodified	_EMEYGNVYF_					0	0	0		nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2-4|LOXHD1;nc|ENSG00000167210|Q8IVV2-5|LOXHD1;nc|ENSG00000167210|Q8IVV2-3|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.2413940429688	2	576.239332	1150.46411	-0.12884	-7.4242E-05	2.3776	0.0013701	2.2488	0.0012958	576.2407423923137	68.81	1.9237	68.579	68.195	70.119	-0.23048					124	46	5	0	0	0	0.70186	1	8012	8012		45.952	1.8352	1	21653000			12798	7660	8908	8926	14206	14206					-0.10510192661968176
EMFGSMFHAE	10	Unmodified	_EMFGSMFHAE_					0	0	0		ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.7883911132812	2	593.238809	1184.46307	-0.86751	-0.00051464	-4.3582	-0.0025855	-5.2257	-0.0031001	593.2363744566592	52.682	0.39495	52.423	52.249	52.644	-0.25838					13	9	2	0	0	0	0.03519	1	5473	5473		51.335	7.2187	1	97294			12799	8477	8909	8927	14207	14207					-0.12178730302503027
EMFQKAAR	8	Unmodified	_EMFQKAAR_					0	0	0		ENST00000551745.1_1_12:81568635-81593297:+|nuORF	ENST00000551745.1_1_12:81568635-81593297:+|nuORF	ENST00000551745.1_1_12:81568635-81593297:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.2725830078125	2	490.752744	979.490935	-0.0039702	-1.9484E-06	-3.0821	-0.0015125	-3.0861	-0.0015145	490.7510581946842	31.061	0.77008	30.908	30.426	31.197	-0.15231					32	18	3	0	0	0	0.027866	1	2028	2028		33.516	24.693	1	368730			12800	16606	8910	8928	14208	14208					0.0003696073987384807
EMFSKKRKIF	10	Unmodified	_EMFSKKRKIF_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.7716369628906	3	438.584797	1312.73256	0.22555	9.8922E-05	2.5324	0.0011107	2.7579	0.0012096	438.5860666371775	21.821	0.52512	21.644	21.397	21.923	-0.17721					20	10	4	0	0	0	0.03519	1	752	752		11.636	0	1	43670	+		12801	25956	8911	8929	14209	14209					0.08870571376155567
EMFSLYHQP	9	Unmodified	_EMFSLYHQP_					0	0	0			REV__nc|ENSG00000164318|Q63HQ2|EGFLAM	REV__nc|ENSG00000164318|Q63HQ2|EGFLAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.3077392578125	2	576.263142	1150.51173	-0.054187	-3.1226E-05	4.2303	0.0024377	4.1761	0.0024065	576.2653838362543	74.368	0.43743	74.105	73.966	74.404	-0.26326					12	9	2	0	0	0	0.024506	1	8814	8814		30.504	0	1	114950	+		12802	25737	8912	8930	14210	14210					-0.057504936711211485
EMGDESEEFL	10	Unmodified	_EMGDESEEFL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	592.7882080078125	2	593.234444	1184.45433	-1.1042	-0.00065506	3.791	0.0022489	2.6867	0.0015939	593.2366359148808	52.399	0.35354	52.28	52.126	52.48	-0.11876					16	8	3	0	0	0	0.03519	1	5432	5432		42.396	6.7778	1	70990			12803	8768	8913	8931	14211	14211					-0.13051425458002086
EMGGHHIV	8	Unmodified	_EMGGHHIV_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	440.21075439453125	2	440.210712	878.406871	-0.38011	-0.00016733	0.68968	0.00030361	0.30957	0.00013628	440.2108848436975	26.594	1.0574	26.426	26.085	27.142	-0.16816					70	25	4	0	0	0	0.41337	2	1386	1386;1396		95.378	40.613	1	1963100			12804	7457	8914	8932	14212;14213	14212					-0.037195703570205296
EMGGHHIV	8	Unmodified	_EMGGHHIV_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.2109069824219	2	440.210712	878.406871	-0.21308	-9.3801E-05	0.28924	0.00012733	0.076159	3.3526E-05	440.21073593393226	26.763	0.98845	26.599	26.271	27.259	-0.16331					72	23	5	0	0	0	0.30656	2	1402	1380;1402		110.17	26.885	1	2005600			12805	7457	8914	8932	14214;14215	14215					-0.037195703570205296
EMGGHHIV	8	Unmodified	_EMGGHHIV_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	440.210712	878.406871	-0.92183	-0.0004058	1.1531	0.00050761	0.23128	0.00010181	440.21108992242085	26.832	1.1881	26.59	26.191	27.379	-0.2417	0.051734	0.00041889	NaN	110.17	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2330700			12806	7457	8914	8932							-0.037195703570205296
EMGLLKMDNAY	11	Unmodified	_EMGLLKMDNAY_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.8704833984375	3	428.870275	1283.58899	0.60691	0.00026029	-0.28094	-0.00012049	0.32598	0.0001398	428.87023194734195	36.907	1.352	36.714	36.335	37.687	-0.193					113	34	4	0	0	0	0.61955	2	2914	2904;2914		68.626	29.666	1	12673000			12807	5230	8915	8933	14216;14217	14217					-0.04145643517085773
EMGLLKMDNAY	11	Unmodified	_EMGLLKMDNAY_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.87060546875	3	428.870275	1283.58899	-0.014633	-6.2758E-06	0.25322	0.0001086	0.23859	0.00010232	428.87047733430035	36.788	1.6975	36.572	36.205	37.903	-0.21661					123	43	4	0	0	0	0.95317	2	2907	2895;2907		47.228	8.9472	1	11744000			12808	5230	8915	8933	14218;14219	14219					-0.04145643517085773
EMGVFGAYFNV	11	Unmodified	_EMGVFGAYFNV_					0	0	0		ENSG00000160282|ENST00000397746|FTCD;nc|ENSG00000160282|O95954-2|FTCD	ENSG00000160282|ENST00000397746|FTCD	ENSG00000160282|ENST00000397746|FTCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	617.2861938476562	2	617.284074	1232.5536	-0.31879	-0.00019678	3.0563	0.0018866	2.7376	0.0016898	617.2857664280264	68.643	0.76394	68.4	68.11	68.874	-0.24277					50	18	4	0	0	0	0.98082	1	7944	7944		39.253	0	1	1526400			12809	6800	8916	8934	14220	14220					-0.053379379826083095
EMHLLLNDL	9	Unmodified	_EMHLLLNDL_					0	0	0			REV__NPR2|p.R804H|1|0.25|ENSG00000159899|chr9:35806430-35806430|G/A|missense_variant	REV__NPR2|p.R804H|1|0.25|ENSG00000159899|chr9:35806430-35806430|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.85595703125	2	549.286617	1096.55868	-1.5695	-0.00086213	-3.6411	-0.002	-5.2106	-0.0028621	549.7868374957906	80.037	0.2509	79.886	79.715	79.966	-0.15168					7	5	2	0	0	0	0.023061	1	9893	9893		69.628	23.655	1	90274	+		12810	37294	8917	8935	14221	14221					0.014263658800018675
EMHNLGHFI	9	Unmodified	_EMHNLGHFI_					0	0	0		ENST00000399449.3_1_10:75479037-75482200:-|nuORF	ENST00000399449.3_1_10:75479037-75482200:-|nuORF	ENST00000399449.3_1_10:75479037-75482200:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.8548583984375	2	549.263476	1096.5124	-0.72346	-0.00039737	-2.2615	-0.0012422	-2.985	-0.0016395	549.2623955498643	80.035	0.50307	80.035	79.87	80.373	0					17	11	2	0	0	0	0.020004	1	9921	9921		106.42	37.628	1	85676			12811	13646	8918	8936	14222	14222					-0.03199654231389104
EMHSLHNHL	9	Unmodified	_EMHSLHNHL_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2655029296875	2	559.264007	1116.51346	-0.66125	-0.00036981	3.3424	0.0018693	2.6812	0.0014995	559.2654354598089	80.297	1.8879	80.319	79.603	81.491	0.021439					119	45	5	0	0	0	0.31247	1	9920	9920		73.975	5.1879	1	2241300			12812	6252	8919	8937	14223	14223					-0.040134398625241374
EMHSMSPSSK	10	Unmodified	_EMHSMSPSSK_					0	0	0			REV__ENSG00000076826|ENST00000160298|CAMSAP3	REV__ENSG00000076826|ENST00000160298|CAMSAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8322143554688	2	560.741716	1119.46888	0.31094	0.00017436	2.5962	0.0014558	2.9072	0.0016302	560.743711143626	72.661	0.20644	72.671	72.529	72.736	0.0097733					5	4	2	0	0	0	0.03519	1	8776	8776		24.519	0	1	48313	+		12813	20573	8920	8938	14224	14224					-0.08607631790846426
EMIIFCIHNV	10	Unmodified	_EMIIFCIHNV_					0	0	0			REV__ENST00000294008.3_1_16:3659441-3659555:-|nuORF	REV__ENST00000294008.3_1_16:3659441-3659555:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.87530517578125	3	406.871838	1217.59369	3.8181	0.0015535	2.7431	0.0011161	6.5612	0.0026696	406.8727198861437	19.64	0.3866	19.707	19.488	19.875	0.066195					12	7	3	0	0	0	1.1314	1	396	396		27.047	0.98393	1	153950	+		12814	29962	8921	8939	14225	14225					-0.006407145836647032
EMIIKDCQV	9	Unmodified	_EMIIKDCQV_					0	0	0			REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7640991210938	2	539.767203	1077.51985	-0.21701	-0.00011713	0.19839	0.00010709	-0.018615	-1.0048E-05	539.7665786674198	49.566	0.66537	49.566	49.212	49.878	0					22	17	2	0	0	0	0.02435	1	5171	5171		19.997	0	1	165850	+		12815	24862	8922	8940	14226	14226					-0.015806827460210116
EMIPLDLLL	9	Unmodified	_EMIPLDLLL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.23974609375	2	528.804111	1055.59367	-0.91572	-0.00048424	4.1839	0.0022125	3.2682	0.0017282	528.8062463051394	63.247	0.63535	63.247	62.811	63.447	0					35	16	3	0	0	0	0.024354	1	7410	7410		47.916	22.342	1	1969000			12816	774	8923	8941	14227	14227					0.06809608687990476
EMISLGMII	9	2 Oxidation (M)	_EM(Oxidation (M))ISLGM(Oxidation (M))II_		EM(1)ISLGM(1)II		EM(85)ISLGM(85)II	0	0	2		ENST00000416702.1_1_10:21318681-21319128:+|nuORF	ENST00000416702.1_1_10:21318681-21319128:+|nuORF	ENST00000416702.1_1_10:21318681-21319128:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7637329101562	2	519.764129	1037.5137	-0.68902	-0.00035813	1.0007	0.00052015	0.31173	0.00016202	519.764447729811	84.063	2.5786	84.063	82.878	85.457	0					110	60	3	0	0	0	0.22754	1	10518	10518		85.359	8.5128	1	621570			12817	13903	8924	8942	14228	14228		497;498			-0.0035520097749213164
EMISLGMII	9	2 Oxidation (M)	_EM(Oxidation (M))ISLGM(Oxidation (M))II_		EM(1)ISLGM(1)II		EM(74)ISLGM(74)II	0	0	2		ENST00000416702.1_1_10:21318681-21319128:+|nuORF	ENST00000416702.1_1_10:21318681-21319128:+|nuORF	ENST00000416702.1_1_10:21318681-21319128:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7640380859375	2	519.764129	1037.5137	-0.74054	-0.00038491	0.96816	0.00050321	0.22761	0.00011831	519.7644358624461	84.096	2.707	84.023	82.633	85.34	-0.072769					132	63	3	0	0	0	0.31247	1	10471	10471		73.975	9.7675	1	641670			12818	13903	8924	8942	14229	14229		497;498			-0.0035520097749213164
EMISLVLLM	9	2 Oxidation (M)	_EM(Oxidation (M))ISLVLLM(Oxidation (M))_		EM(1)ISLVLLM(1)		EM(50)ISLVLLM(50)	0	0	2			REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.8162841796875	2	540.787604	1079.56065	0.0093989	5.0828E-06	-4.4399	-0.002401	-4.4305	-0.002396	540.7854138568882	37.353	0.43732	37.353	37.195	37.632	0					15	11	2	0	0	0	0.024325	1	3027	3027		50.025	9.4519	1	162000	+		12819	33737	8925	8943	14230	14230		921;922			0.02405658573616165
EMISLVLLM	9	2 Oxidation (M)	_EM(Oxidation (M))ISLVLLM(Oxidation (M))_		EM(1)ISLVLLM(1)		EM(77)ISLVLLM(77)	0	0	2			REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.816162109375	2	540.787604	1079.56065	-0.40256	-0.0002177	-4.2559	-0.0023015	-4.6585	-0.0025192	540.7855549104617	37.141	0.36369	37.078	36.978	37.342	-0.063385					14	9	2	0	0	0	0.023355	1	2983	2983		76.847	28.931	1	129030	+		12820	33737	8925	8943	14231	14231		921;922			0.02405658573616165
EMISLVLLM	9	2 Oxidation (M)	_EM(Oxidation (M))ISLVLLM(Oxidation (M))_					0	0	2			REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	REV__ENST00000492366.5_1_4:104012383-104013811:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.787604	1079.56065	-0.62808	-0.00033966	-5.111	-0.0027639	-5.739	-0.0031036	540.7849631963302	37.352	0.3362	37.385	37.226	37.563	0.032269	0.1127	-0.00027294	NaN	76.847	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103660	+		12821	33737	8925	8943				921;922			0.02405658573616165
EMKCALRLR	9	Carbamidomethyl (C),Oxidation (M)	_EM(Oxidation (M))KC(Carbamidomethyl (C))ALRLR_	EMKC(1)ALRLR	EM(1)KCALRLR	EMKC(46)ALRLR	EM(46)KCALRLR	0	1	1			REV__ENST00000604957.1_2_X:101857073-101857160:+|nuORF	REV__ENST00000604957.1_2_X:101857073-101857160:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	596.8162841796875	2	596.818092	1191.62163	-1.7805	-0.0010626	-0.99395	-0.00059321	-2.7744	-0.0016558	596.8173975052267	34.503	1.1376	34.503	34.168	35.306	0					76	29	4	0	0	0	0.70186	1	2599	2599		45.952	13.201	1	2670000	+		12822	35914	8926	8944	14232	14232	465	958			0.033486083964135105
EMKDQDPLI	9	Unmodified	_EMKDQDPLI_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3154907226562	2	544.768257	1087.52196	-0.41994	-0.00022877	2.9687	0.0016173	2.5488	0.0013885	545.2711251502805	91.079	0.37003	91.09	90.867	91.237	0.011276					13	8	2	0	0	0	0.024344	1	11450	11450		37.812	0	1	126000	+		12823	28132	8927	8945	14233	14233					-0.01829930736539609
EMKHDGIR	8	Oxidation (M)	_EM(Oxidation (M))KHDGIR_		EM(1)KHDGIR		EM(70)KHDGIR	0	0	1		nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENST00000481559.6_1_5:152869375-153085697:+|nuORF	nc|ENSG00000155511|P42261-3|GRIA1	nc|ENSG00000155511|P42261-3|GRIA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7636413574219	2	501.245283	1000.47601	-0.21842	-0.00010948	-0.50986	-0.00025556	-0.72827	-0.00036504	501.2445114792154	43.059	0.72575	42.92	42.595	43.321	-0.13929					37	19	3	0	0	0	0.027866	1	3981	3981		69.628	14.851	1	141160			12824	6476	8928	8946	14234	14234		270			-0.024205311281207287
EMKILPVL	8	Oxidation (M)	_EM(Oxidation (M))KILPVL_		EM(1)KILPVL		EM(110)KILPVL	0	0	1		ENSG00000081721|ENST00000367943|DUSP12	ENSG00000081721|ENST00000367943|DUSP12	ENSG00000081721|ENST00000367943|DUSP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7842102050781	2	479.785721	957.55689	0.82664	0.00039661	-4.123	-0.0019782	-3.2964	-0.0015815	479.7836052724121	96.636	1.3272	96.642	96.353	97.68	0.0065002					74	29	5	0	0	0	0.30538	1	12297	12297		110.34	21.694	1	2246700			12825	1712	8929	8947	14235	14235		61			0.076413568620751
EMKISCGGRS	10	Unmodified	_EMKISCGGRS_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2536010742188	2	534.252251	1066.48995	-0.31876	-0.0001703	2.3725	0.0012675	2.0537	0.0010972	534.2536031125229	106.45	0.78381	106.45	105.92	106.7	-0.0013123					37	25	3	0	0	0	1.0616	1	13637	13637		37.812	2.1932	1	301900	+		12826	27627	8930	8948	14236	14236					-0.040636216913298995
EMKKEQVSRL	10	Unmodified	_EMKKEQVSRL_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.56292724609375	3	416.564062	1246.67036	-0.33638	-0.00014012	-2.786	-0.0011606	-3.1224	-0.0013007	416.56282812284195	28.469	0.85702	28.469	27.963	28.82	0					67	20	5	0	0	0	0.91448	1	1657	1657		53.089	2.2977	1	2014700	+		12827	26508	8931	8949	14237	14237					0.05688800237180658
EMKKEQVSRL	10	Unmodified	_EMKKEQVSRL_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.5628662109375	3	416.564062	1246.67036	-0.23255	-9.6871E-05	-2.7428	-0.0011425	-2.9753	-0.0012394	416.56286069697944	28.107	0.93528	28.188	27.721	28.657	0.080812					71	22	5	0	0	0	0.98044	1	1566	1566		48.602	2.6934	1	1806500	+		12828	26508	8931	8949	14238	14238					0.05688800237180658
EMKKILAEN	9	Unmodified	_EMKKILAEN_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2780151367188	2	538.294442	1074.57433	-1.189	-0.00064001	2.3792	0.0012807	1.1902	0.00064068	538.2962372630137	84.584	0.49538	84.511	84.305	84.8	-0.072769					16	11	3	0	0	0	0.024313	1	10581	10581		60.118	0	1	160250			12829	10174	8932	8950	14239	14239					0.040026523970709604
EMKKIQNE	8	Unmodified	_EMKKIQNE_					0	0	0			REV__ENSG00000147874|ENST00000380502|HAUS6	REV__ENSG00000147874|ENST00000380502|HAUS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7817687988281	2	510.263142	1018.51173	-1.1581	-0.00059094	-3.4992	-0.0017855	-4.6574	-0.0023765	510.26110588764965	43.778	0.54662	43.778	43.475	44.022	0					19	14	2	0	0	0	0.027866	1	4151	4151		79.713	15.505	1	251350	+		12830	24586	8933	8951	14240	14240					0.0032150632887351094
EMKKKILA	8	Unmodified	_EMKKKILA_					0	0	0		ENST00000493234.1_1_11:1955154-1956368:+|nuORF;nc|ENSG00000130595|P45378-5|TNNT3;nc|ENSG00000130595|P45378-7|TNNT3;nc|ENSG00000130595|P45378-4|TNNT3;nc|ENSG00000130595|P45378-6|TNNT3;ENSG00000130595|ENST00000278317|TNNT3;nc|ENSG00000130595|P45378-3|TNNT3;nc|ENSG00000130595|P45378|TNNT3	ENST00000493234.1_1_11:1955154-1956368:+|nuORF	ENST00000493234.1_1_11:1955154-1956368:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.8011779785156	2	480.799163	959.583773	0.37808	0.00018178	2.6419	0.0012702	3.02	0.001452	480.80031956512425	94.257	2.0083	94.257	93.77	95.778	0					166	47	6	0	0	0	1.0338	1	12042	12042		31.955	0	1	23477000			12831	4433	8934	8952	14241	14241					0.1023646547325825
EMKKKKERKRR	11	Unmodified	_EMKKKKERKRR_					0	0	0		nc|ENSG00000163081|Q96MF4|CCDC140	nc|ENSG00000163081|Q96MF4|CCDC140	nc|ENSG00000163081|Q96MF4|CCDC140	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.32403564453125	3	506.312071	1515.91438	-0.40899	-0.00020708	-3.2264	-0.0016335	-3.6354	-0.0018406	506.31093425412234	79.095	0.16682	78.923	78.777	78.944	-0.17226					6	3	2	0	0	0	0.024892	1	9749	9749		8.7993	2.4784	1	47872			12832	18441	8935	8953	14242	14242					0.17706304121725225
EMKKKNVEFR	10	Unmodified	_EMKKKNVEFR_					0	0	0			REV__ENST00000506644.3_1_5:140083564-140085338:+|nuORF	REV__ENST00000506644.3_1_5:140083564-140085338:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.7637634277344	3	436.90794	1307.70199	-0.51596	-0.00022543	-2.9256	-0.0012782	-3.4415	-0.0015036	436.9069646258463	27.116	0.20825	26.874	26.786	26.995	-0.24217					5	4	2	0	0	0	0.03519	1	1483	1483		29.551	9.2357	1	18251	+		12833	24452	8936	8954	14243	14243					0.06044792991110626
EMKLIVHPGK	10	Unmodified	_EMKLIVHPGK_					0	0	0			REV__ENSG00000212864|ENST00000391553|RNF208	REV__ENSG00000212864|ENST00000391553|RNF208	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2950439453125	2	576.333901	1150.65325	-0.25122	-0.00014478	2.5333	0.00146	2.2821	0.0013153	576.3352578219087	83.254	3.4517	83.115	81.66	85.112	-0.13861					163	80	3	0	0	0	0.03519	1	9992	9992		19.997	0	1	256700	+		12834	28720	8937	8955	14244	14244					0.08394924422009353
EMKQNSIW	8	Unmodified	_EMKQNSIW_					0	0	0		ENST00000448864.5_1_3:197678112-197680932:+|nuORF	ENST00000448864.5_1_3:197678112-197680932:+|nuORF	ENST00000448864.5_1_3:197678112-197680932:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8157958984375	2	518.250034	1034.48552	-0.50766	-0.0002631	-3.0428	-0.0015769	-3.5505	-0.00184	518.2480917871883	28.388	0.90539	28.219	27.649	28.554	-0.16897					33	21	2	0	0	0	0.027866	1	1579	1579		44.117	0	1	115970			12835	14486	8938	8956	14245	14245					-0.030347628425943185
EMKRKQSLN	9	Unmodified	_EMKRKQSLN_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2910766601562	2	567.308415	1132.60228	-1.6048	-0.00091041	-1.4906	-0.00084564	-3.0954	-0.001756	567.3065939909781	59.857	0.22317	59.936	59.826	60.049	0.078888					7	5	2	0	0	0	0.024495	1	6791	6791		26.693	7.5894	1	33767			12836	3368	8939	8957	14246	14246					0.04127975377173243
EMKRLKEV	8	Unmodified	_EMKRLKEV_					0	0	0			REV__ENSG00000137628|ENST00000393743|DDX60	REV__ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.281982421875	2	516.797152	1031.57975	0.6061	0.00031323	-0.21239	-0.00010976	0.3937	0.00020347	517.2982084037061	74.507	0.99145	74.324	73.859	74.851	-0.18279					55	23	4	0	0	0	0.027866	1	8841	8841		52.937	23.787	1	760890	+		12837	23771	8940	8958	14247	14247					0.06522375979534445
EMKRLKEV	8	Unmodified	_EMKRLKEV_					0	0	0			REV__ENSG00000137628|ENST00000393743|DDX60	REV__ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.281982421875	2	516.797152	1031.57975	0.31893	0.00016482	1.7542	0.00090658	2.0732	0.0010714	516.7980494164065	75.266	0.50193	75.091	74.732	75.234	-0.17548					18	11	2	0	0	0	0.027866	1	8841	8841		52.937	23.787	1	190810	+		12838	23771	8940	8958	14248	14248					0.06522375979534445
EMKRRMTF	8	Unmodified	_EMKRRMTF_					0	0	0			REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.759033203125	2	549.780979	1097.5474	0.13771	7.5709E-05	2.9228	0.0016069	3.0605	0.0016826	549.7820572123436	68.679	0.60468	68.449	68.156	68.76	-0.23047					28	14	3	0	0	0	0.027866	1	7919	7919		37.159	0	1	284560	+		12839	23092	8941	8959	14249	14249					0.002532653049001965
EMKSNELRSN	10	Unmodified	_EMKSNELRSN_					0	0	0			REV__ENST00000542575.6_2_19:47278508-47278697:-|nuORF	REV__ENST00000542575.6_2_19:47278508-47278697:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2071533203125	3	403.196038	1206.56629	0.56243	0.00022677	-3.1809	-0.0012825	-2.6185	-0.0010558	403.52874806630615	35.182	0.3237	35.182	35.056	35.38	0					13	8	2	0	0	0	0.03519	1	2715	2715		53.597	2.0691	1	83034	+		12840	34795	8942	8960	14250	14250					-0.028735265903378604
EMKWEKLM	8	Unmodified	_EMKWEKLM_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7799072265625	2	547.772288	1093.53002	-0.93977	-0.00051478	0.39351	0.00021555	-0.54626	-0.00029923	547.7729646615352	73.233	0.98382	73.233	72.493	73.477	0					33	24	2	0	0	0	0.027866	1	8962	8962		68.787	24.67	1	179240	+		12841	22439	8943	8961	14251	14251					-0.013000750207766032
EMLDWVLL	8	Unmodified	_EMLDWVLL_					0	0	0			REV__ENST00000361060.5_1_2:69590775-69601149:-|nuORF	REV__ENST00000361060.5_1_2:69590775-69601149:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.3110046386719	2	509.767529	1017.5205	-0.33518	-0.00017086	1.3549	0.00069071	1.0198	0.00051984	510.27106142319184	77.617	0.88199	77.63	76.978	77.86	0.013496					26	20	2	0	0	0	0.027866	1	9517	9517		62.978	7.4742	1	213350	+		12842	30928	8944	8962	14252	14252					0.012444799653621885
EMLELKESL	9	Unmodified	_EMLELKESL_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2864990234375	2	546.286282	1090.55801	-0.64029	-0.00034978	0.46605	0.0002546	-0.17424	-9.5187E-05	546.2862951361227	84.357	0.54861	84.357	83.997	84.546	0					44	12	4	0	0	0	0.11092	1	10553	10553		108.09	0	1	2218100	+		12843	25194	8945	8963	14253	14253					0.016355264403273395
EMLELKESL	9	Unmodified	_EMLELKESL_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.287353515625	2	546.286282	1090.55801	0.29668	0.00016207	-0.28152	-0.00015379	0.015163	8.2836E-06	546.2859149760867	84.381	1.06	84.178	83.82	84.88	-0.20329					50	24	3	0	0	0	0.17822	1	10181	10181		93.195	2.8256	1	1168300	+		12844	25194	8945	8963	14254	14254					0.016355264403273395
EMLELLPPF	9	Unmodified	_EMLELLPPF_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2354125976562	2	544.788461	1087.56237	0.27442	0.0001495	3.7413	0.0020382	4.0157	0.0021877	544.7902884070407	59.217	1.0333	59.035	58.628	59.661	-0.18133					50	25	4	0	0	0	0.024354	1	6481	6481		57.811	7.7867	1	758940			12845	8901;16105	8946	8964	14255	14255					0.022090356538910783
EMLERLQAE	9	Unmodified	_EMLERLQAE_					0	0	0			REV__nc|ENSG00000133561|Q6P9H5-2|GIMAP6	REV__nc|ENSG00000133561|Q6P9H5-2|GIMAP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2987060546875	2	559.779156	1117.54376	-1.2352	-0.00069144	-1.2392	-0.00069368	-2.4744	-0.0013851	559.779498082136	29.129	1.7394	29.129	28.074	29.814	0					86	42	3	0	0	0	0.024466	1	1652	1652		31.53	0	1	617690	+		12846	23377	8947	8965	14256	14256					-0.010311259879699719
EMLHLLHG	8	Unmodified	_EMLHLLHG_					0	0	0			REV__ENST00000519677.1_1_5:78296041-78296494:-|nuORF	REV__ENST00000519677.1_1_5:78296041-78296494:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.79266357421875	2	475.249837	948.485122	-0.4678	-0.00022232	0.52931	0.00025156	0.061519	2.9237E-05	475.24972433056683	55.967	0.4639	56.065	55.782	56.246	0.097893					18	12	2	0	0	0	0.027866	1	6164	6164		29.842	5.6388	1	173380	+		12847	34266	8948	8966	14257	14257					0.008818622282092292
EMLIVIVIL	9	Unmodified	_EMLIVIVIL_					0	0	0			REV__ENST00000459929.5_1_1:185278153-185278243:-|nuORF	REV__ENST00000459929.5_1_1:185278153-185278243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2799072265625	2	521.832672	1041.65079	0.63113	0.00032934	2.181	0.0011381	2.8121	0.0014674	521.8341419681433	59.827	0.77065	59.827	59.295	60.066	0					37	20	3	0	0	0	0.024386	1	6873	6873		33.516	0	1	811950	+		12848	32835	8949	8967	14258	14258					0.13163075964348536
EMLKAFPEP	9	Unmodified	_EMLKAFPEP_					0	0	0			REV__nc|ENSG00000006432|P80192-4|MAP3K9	REV__nc|ENSG00000006432|P80192-4|MAP3K9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.326416015625	2	531.270435	1060.52632	-0.78197	-0.00041544	-2.1548	-0.0011448	-2.9368	-0.0015602	531.2691829837754	74.43	0.97375	74.439	73.881	74.854	0.0096512					61	22	4	0	0	0	0.024263	1	9063	9063		42.396	0	1	1241200	+		12849	19830	8950	8968	14259	14259					-0.0015242152298924339
EMLKEVIAL	9	Unmodified	_EMLKEVIAL_					0	0	0			REV__ENSG00000148677|ENST00000371697|ANKRD1	REV__ENSG00000148677|ENST00000371697|ANKRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3036499023438	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.39228	1	10961	10961		66.429	9.7082	1	11897000	+		12850	24630	8951	8969	14260	14260					0.06840724545190824
EMLLGLFSR	9	Unmodified	_EMLLGLFSR_					0	0	0		ENST00000486228.7_1_9:90582379-90585754:-|nuORF	ENST00000486228.7_1_9:90582379-90585754:-|nuORF	ENST00000486228.7_1_9:90582379-90585754:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2802124023438	2	533.291702	1064.56885	-0.31598	-0.00016851	-2.9607	-0.0015789	-3.2767	-0.0017475	533.2899832637495	54.079	0.38628	53.881	53.709	54.096	-0.19739					16	11	2	0	0	0	0.024466	1	5743	5743		39.253	0	1	363620			12851	15342	8952	8970	14261	14261					0.03914973605265004
EMLLLPLLL	9	Unmodified	_EMLLLPLLL_					0	0	0		nc|ENSG00000161640|Q96RL6-2|SIGLEC11;ENSG00000161640|ENST00000447370|SIGLEC11	nc|ENSG00000161640|Q96RL6-2|SIGLEC11	nc|ENSG00000161640|Q96RL6-2|SIGLEC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2393188476562	2	527.832672	1053.65079	-0.59412	-0.0003136	4.3807	0.0023123	3.7866	0.0019987	527.8348567181829	63.311	0.6118	63.311	63.054	63.666	0					35	16	3	0	0	0	0.024354	1	7425	7425		57.811	7.7867	1	663510			12852	6885	8953	8971	14262	14262					0.12611075964355223
EMLLRSGI	8	Oxidation (M)	_EM(Oxidation (M))LLRSGI_		EM(1)LLRSGI		EM(96)LLRSGI	0	0	1		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2615051269531	2	467.754953	933.495352	0.37016	0.00017315	-4.2265	-0.001977	-3.8563	-0.0018038	467.7528600546188	44.39	0.57437	44.426	44.209	44.783	0.0369					27	16	2	0	0	0	0.027866	1	4232	4232		96.19	21.935	1	393770			12853	5422	8954	8972	14263	14263		230			0.02594425162794778
EMLLRSGI	8	Oxidation (M)	_EM(Oxidation (M))LLRSGI_					0	0	1		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	467.754953	933.495352	-0.91475	-0.00042788	-2.9778	-0.0013929	-3.8925	-0.0018207	467.7533574454191	44.404	0.56774	44.404	44.089	44.657	0	-0.0023792	0.0002768	NaN	96.19	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400140			12854	5422	8954	8972				230			0.02594425162794778
EMLLRSGI	8	Oxidation (M)	_EM(Oxidation (M))LLRSGI_					0	0	1		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;TICRR|p.M814Ifs*5|1|0.08|ENSG00000140534|chr15:89601849-89601850|-/TACGTAGGTTT|frameshift_variant	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	467.754953	933.495352	-0.99871	-0.00046715	-2.96	-0.0013846	-3.9587	-0.0018517	467.75347658210075	44.534	0.50396	44.388	44.161	44.665	-0.14625	-0.018009	0.0002934	NaN	96.19	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320800			12855	5422	8954	8972				230			0.02594425162794778
EMLLVLGIAS	10	Unmodified	_EMLLVLGIAS_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3035278320312	2	523.301736	1044.58892	0.12304	6.4388E-05	3.2645	0.0017083	3.3876	0.0017727	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	1.0271	1	10413	10413		42.396	5.3677	1	3963900	+		12856	24101	8955	8973	14264	14264					0.06840724545190824
EMLLVLLVL	9	Unmodified	_EMLLVLLVL_					0	0	0		GDF15|p.Q13E|1|0.27|ENSG00000130513|chr19:18386226-18386226|C/G|missense_variant	GDF15|p.Q13E|1|0.27|ENSG00000130513|chr19:18386226-18386226|C/G|missense_variant	GDF15|p.Q13E|1|0.27|ENSG00000130513|chr19:18386226-18386226|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2793579101562	2	521.832672	1041.65079	-0.40124	-0.00020938	3.4506	0.0018007	3.0494	0.0015913	521.8345389727514	60.032	0.5543	59.832	59.538	60.093	-0.20016					33	14	3	0	0	0	0.024357	1	6872	6872		35.201	0	1	793670			12857	17673	8956	8974	14265	14265					0.13163075964348536
EMLPATEVTV	10	Unmodified	_EMLPATEVTV_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3245849609375	2	545.278457	1088.54236	-0.48577	-0.00026488	0.72933	0.00039769	0.24356	0.00013281	545.2780964479217	68.256	0.2336	67.964	67.819	68.052	-0.29267					6	5	2	0	0	0	0.03519	1	8148	8148		54.776	14.204	1	69911			12858	7225	8957	8975	14266	14266					0.0016323992324487335
EMLPEGGPPE	10	Unmodified	_EMLPEGGPPE_					0	0	0			REV__nc|ENSG00000055118|Q12809-4|KCNH2	REV__nc|ENSG00000055118|Q12809-4|KCNH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2394409179688	2	528.239332	1054.46411	1.2267	0.000648	-1.4935	-0.00078894	-0.26682	-0.00014094	528.238467567401	63.16	2.5034	63.215	62.801	65.305	0.054104					190	67	4	0	0	0	0.96965	1	7353	7353		49.442	7.0454	1	23832000	+		12859	20199	8958	8976	14267	14267					-0.060941926619761944
EMLPKKLL	8	Unmodified	_EMLPKKLL_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3035888671875	2	486.301539	970.588524	-0.068388	-3.3257E-05	3.7344	0.001816	3.666	0.0017828	486.3033066802314	20.146	0.77432	19.978	19.571	20.345	-0.16774					29	15	3	0	0	0	0.81662	1	509	509		57.811	11.859	1	628440			12860	2558	8959	8977	14268	14268					0.10205349616023796
EMLPQNKQL	9	Unmodified	_EMLPQNKQL_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.3071899414062	2	550.792066	1099.56958	0.7466	0.00041122	-3.6871	-0.0020308	-2.9405	-0.0016196	550.7899618675572	64.106	0.69964	64.106	63.917	64.617	0					46	18	3	0	0	0	0.024484	1	7592	7592		45.972	5.3996	1	1310500	+		12861	36757	8960	8978	14269	14269					0.023777682543141054
EMLPRHEF	8	Unmodified	_EMLPRHEF_					0	0	0		ENST00000374601.7_1_1:23730247-23730406:-|nuORF	ENST00000374601.7_1_1:23730247-23730406:-|nuORF	ENST00000374601.7_1_1:23730247-23730406:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7622680664062	2	529.758027	1057.5015	0.2419	0.00012815	2.8183	0.001493	3.0602	0.0016212	529.7592305043199	85.664	1.3156	85.664	85.289	86.605	0					54	30	3	0	0	0	0.94517	1	10764	10764		45.952	1.8352	1	892330			12862	13123	8961	8979	14270	14270					-0.02495056605721402
EMLPSYHK	8	Unmodified	_EMLPSYHK_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7926330566406	2	502.747127	1003.4797	-0.66197	-0.0003328	-3.4628	-0.0017409	-4.1248	-0.0020737	502.745176467148	64.466	0.77343	64.211	63.534	64.307	-0.25563					25	19	2	0	0	0	0.027866	1	7295	7295		55.504	0	1	328840			12863	2021	8962	8980	14271	14271					-0.02189861354270306
EMLQKNPSL	9	Unmodified	_EMLQKNPSL_					0	0	0		ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2777099609375	2	530.278792	1058.54303	-1.0462	-0.00055476	-2.04	-0.0010818	-3.0861	-0.0016365	530.2771408953049	80.4	0.97697	80.4	80.12	81.097	0					58	23	4	0	0	0	0.15366	2	10000	10000;10013		98.629	16.389	1	1919900			12864	1035	8963	8981	14272;14273	14272					0.016100793629675536
EMLRAVQE	8	Unmodified	_EMLRAVQE_					0	0	0			REV__nc|ENSG00000134882|Q8NBM4-4|UBAC2	REV__nc|ENSG00000134882|Q8NBM4-4|UBAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.752197265625	2	488.250034	974.485516	-0.59173	-0.00028891	3.318	0.00162	2.7263	0.0013311	488.25171356817253	29.212	3.9385	29.215	26.802	30.741	0.0031376					219	98	6	0	0	0	0.68164	1	1738	1738		68.787	0	1	6146300	+		12865	23492	8964	8982	14274	14274					-0.0027476284260501416
EMLRKDKL	8	Unmodified	_EMLRKDKL_					0	0	0			REV__ENST00000358220.5_1_10:1125986-1126019:+|nuORF	REV__ENST00000358220.5_1_10:1125986-1126019:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2822875976562	2	516.797152	1031.57975	0.20022	0.00010347	-0.53663	-0.00027733	-0.33642	-0.00017386	517.298217539192	74.743	1.2425	74.484	73.78	75.023	-0.25887					39	29	2	0	0	0	0.027866	1	9151	9151		42.396	5.237	1	265440	+		12866	30851	8965	8983	14275	14275					0.06522375979534445
EMLSESEKVS	10	Unmodified	_EMLSESEKVS_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7378540039062	2	569.768454	1137.52235	0.10656	6.0716E-05	-2.1893	-0.0012474	-2.0827	-0.0011867	569.7669585886191	57.938	0.22834	57.748	57.56	57.789	-0.19017					9	5	2	0	0	0	0.03519	1	6324	6324		31.53	3.6476	1	346280	+		12867	21880	8966	8984	14276	14276					-0.04090555807351848
EMLSMKLID	9	Unmodified	_EMLSMKLID_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2766723632812	2	540.277403	1078.54025	-1.0633	-0.00057447	0.92198	0.00049813	-0.1413	-7.6341E-05	540.2777271564354	60.933	1.7757	61.004	60.004	61.779	0.071125					98	46	4	0	0	0	0.17822	1	6947	6947		93.195	18.94	1	3404300	+		12868	25209	8967	8985	14277	14277					0.0041248791380894545
EMLTKKSTL	9	Unmodified	_EMLTKKSTL_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7950439453125	2	525.796817	1049.57908	-0.53639	-0.00028203	0.98011	0.00051534	0.44372	0.00023331	525.7971700351849	31.254	0.39569	31.013	30.753	31.149	-0.24109					23	9	3	0	0	0	0.17822	1	2065	2065		93.195	18.94	1	1064900			12869	9229	8968	8986	14278	14278					0.05627536539850553
EMLVMAAELN	10	Unmodified	_EMLVMAAELN_					0	0	0			REV__ENSG00000165125|ENST00000359396|TRPV6	REV__ENSG00000165125|ENST00000359396|TRPV6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8143310546875	2	560.772485	1119.53042	1.1904	0.00066754	-1.1697	-0.00065595	0.020668	1.159E-05	560.7716785451755	82.476	1.1464	82.366	81.921	83.067	-0.11006					47	26	3	0	0	0	0.03519	1	10201	10201		26.693	0	1	337850	+		12870	25843	8969	8987	14279	14279					-0.02456700091579478
EMLYISVL	8	Unmodified	_EMLYISVL_					0	0	0			REV__ENST00000538014.2_1_Y:21751423-21751552:+|nuORF	REV__ENST00000538014.2_1_Y:21751423-21751552:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.265625	2	484.262079	966.509605	0.071664	3.4704E-05	3.5454	0.0017169	3.6171	0.0017516	484.26375440341576	57.192	0.79976	57.028	56.745	57.545	-0.16431					56	21	3	0	0	0	0.97924	1	6412	6412		40.573	2.7611	1	3279300	+		12871	34709	8970	8988	14280	14280					0.02501077591068679
EMMDVASA	8	Unmodified	_EMMDVASA_					0	0	0			REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1	REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7398681640625	2	427.175146	852.33574	-0.32957	-0.00014078	2.3358	0.00099781	2.0063	0.00085702	427.17602296299543	22.429	0.46248	22.244	21.952	22.415	-0.18539					14	9	2	0	0	0	0.027866	1	773	773		7.1934	0	1	32764	+		12872	28683	8971	8989	14281	14281					-0.0963345117671679
EMMGYLQW	8	Unmodified	_EMMGYLQW_					0	0	0			REV__ENST00000390615.2_1_14:106815822-106815951:-|nuORF	REV__ENST00000390615.2_1_14:106815822-106815951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.8189086914062	2	529.227713	1056.44087	0.271	0.00014342	-3.5867	-0.0018982	-3.3157	-0.0017548	529.22569217338	70.34	0.2363	70.126	69.937	70.174	-0.21424					9	5	2	0	0	0	0.027866	1	8178	8178		21.702	10.191	1	155400	+		12873	31579	8972	8990	14282	14282					-0.08508909980287171
EMMHISKLK	9	Unmodified	_EMMHISKLK_					0	0	0		ENSG00000256525|ENST00000539111|POLG2	ENSG00000256525|ENST00000539111|POLG2	ENSG00000256525|ENST00000539111|POLG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.8009643554688	2	558.798837	1115.58312	0.57074	0.00031893	2.2904	0.0012798	2.8611	0.0015988	558.7995780876657	86.814	1.1044	86.672	86.321	87.425	-0.14218					67	25	4	0	0	0	0.62163	1	10548	10548		51.335	1.7994	1	1030000			12874	10909	8973	8991	14283	14283					0.029953027618830674
EMMPPLKV	8	Unmodified	_EMMPPLKV_					0	0	0			REV__nc|ENSG00000128923|Q8NBR6-2|MINDY2	REV__nc|ENSG00000128923|Q8NBR6-2|MINDY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7694091796875	2	472.750824	943.487096	-0.2615	-0.00012363	0.87698	0.0004146	0.61548	0.00029097	472.7510480361943	75.649	0.58104	75.649	75.413	75.994	0					23	15	2	0	0	0	0.027866	1	9349	9349		12.207	3.3845	1	202090	+		12875	23020	8974	8992	14284	14284					0.01309154921807476
EMNEKCTEY	9	Oxidation (M)	_EM(Oxidation (M))NEKCTEY_		EM(1)NEKCTEY		EM(77)NEKCTEY	0	0	1		ENSG00000110786|ENST00000358540|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5;nc|ENSG00000110786|P54829-2|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.7235717773438	2	581.723189	1161.43183	-1.735	-0.0010093	1.5321	0.00089124	-0.20295	-0.00011806	581.7239095315806	37.685	0.73851	37.466	37.192	37.93	-0.2195					58	19	4	0	0	0	0.29158	1	3067	3067		76.774	21.27	1	3985500			12876	3063	8975	8993	14285	14285		112			-0.14243348127274658
EMNEKLKND	9	Unmodified	_EMNEKLKND_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.831787109375	2	560.768788	1119.52302	-0.1161	-6.5103E-05	-0.80261	-0.00045008	-0.91871	-0.00051518	561.2676505027135	73.218	0.16672	72.946	72.842	73.009	-0.27126					5	3	2	0	0	0	0.024511	1	8887	8887		25.574	0	1	47614	+		12877	25882	8976	8994	14286	14286					-0.03195716367645218
EMNIANVPGI	10	Unmodified	_EMNIANVPGI_					0	0	0			REV__nc|ENSG00000113327|P18507-1|GABRG2	REV__nc|ENSG00000113327|P18507-1|GABRG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8156127929688	2	529.270967	1056.52738	0.042165	2.2317E-05	-3.3378	-0.0017666	-3.2956	-0.0017443	529.2688884811361	68.299	0.85294	68.044	67.74	68.593	-0.25516					45	20	3	0	0	0	0.03519	1	7894	7894		58.782	0	1	1156300	+		12878	22060	8977	8995	14287	14287					0.0013779284593056218
EMNKKAQW	8	Unmodified	_EMNKKAQW_					0	0	0			REV__ENST00000263915.7_1_2:165365032-165365322:-|nuORF	REV__ENST00000263915.7_1_2:165365032-165365322:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2816772460938	2	517.758027	1033.5015	-0.019816	-1.026E-05	3.8767	0.0020072	3.8569	0.001997	517.760652085524	75.192	0.29556	74.929	74.691	74.987	-0.26263					8	6	2	0	0	0	0.027866	1	8867	8867		42.474	0	1	43008	+		12879	29700	8978	8996	14288	14288					-0.013910566057120377
EMNLLEMY	8	Oxidation (M)	_EMNLLEM(Oxidation (M))Y_		EM(0.002)NLLEM(0.998)Y		EM(-27)NLLEM(27)Y	0	0	1		ENST00000492556.5_1_22:51018168-51020414:-|nuORF;ENST00000468532.5_1_22:51018168-51020803:-|nuORF;ENSG00000100288|ENST00000406938|CHKB	ENST00000492556.5_1_22:51018168-51020414:-|nuORF	ENST00000492556.5_1_22:51018168-51020414:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7302856445312	2	529.730286	1057.44602	-0.20214	-0.00010708	-0.059121	-3.1318E-05	-0.26126	-0.0001384	529.7299609207103	51.136	0.98812	50.859	50.552	51.54	-0.27643					56	25	3	0	0	0	0.71833	1	5220	5220		65.803	10.299	2	2604700			12880	2168	8979	8997	14289	14289		79			-0.08040650908333191
EMNPDIYPL	9	Unmodified	_EMNPDIYPL_					0	0	0			REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2577514648438	2	546.257525	1090.5005	-0.27245	-0.00014883	-3.9602	-0.0021633	-4.2327	-0.0023121	546.2553334712911	59.724	0.52011	59.476	59.09	59.61	-0.24842					29	12	3	0	0	0	0.19099	1	6591	6591		90.37	13.596	1	1672700	+		12881	37537	8980	8998	14290	14290					-0.04113315765266634
EMNPDIYPL	9	Unmodified	_EMNPDIYPL_					0	0	0			REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.257525	1090.5005	0.51453	0.00028107	-3.6869	-0.002014	-3.1724	-0.001733	546.2553391121904	59.445	0.73496	59.445	59.145	59.88	0	0.034809	-0.00029839	NaN	90.37	63	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2346200	+		12882	37537	8980	8998							-0.04113315765266634
EMNPDIYPL	9	Unmodified	_EMNPDIYPL_					0	0	0			REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.257525	1090.5005	0.22848	0.00012481	-3.3528	-0.0018315	-3.1243	-0.0017067	546.2554783968587	59.553	0.76756	59.353	58.994	59.761	-0.20016	-0.057593	6.6647E-05	NaN	90.37	69	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2356000	+		12883	37537	8980	8998							-0.04113315765266634
EMNPDIYPL	9	Unmodified	_EMNPDIYPL_					0	0	0			REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.257525	1090.5005	-0.49723	-0.00027161	-2.6719	-0.0014595	-3.1691	-0.0017311	546.2558318309809	59.21	0.87716	59.296	58.921	59.798	0.085682	-0.11436	0.00081061	NaN	90.37	73	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2136900	+		12884	37537	8980	8998							-0.04113315765266634
EMNSSESAGY	10	Unmodified	_EMNSSESAGY_					0	0	0			REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2891845703125	2	537.705854	1073.39715	-0.54796	-0.00029464	-3.9384	-0.0021177	-4.4863	-0.0024123	537.703639781623	89.133	1.1856	88.995	88.692	89.877	-0.13761					61	27	3	0	0	0	0.03519	1	10966	10966		54.776	37.411	1	1577600	+		12885	25439	8981	8999	14291	14291					-0.1366084794372
EMNVNIPQL	9	Unmodified	_EMNVNIPQL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.81689453125	2	529.270967	1056.52738	0.051822	2.7428E-05	-3.4729	-0.0018381	-3.421	-0.0018107	529.2688151764636	68.244	0.60258	68.01	67.797	68.399	-0.23375					40	14	4	0	0	0	0.023239	1	7906	7906		74.255	24.813	1	856950			12886	1520	8982	9000	14292	14292					0.0013779284593056218
EMPGYRKVV	9	Unmodified	_EMPGYRKVV_					0	0	0			REV__ENST00000588919.5_1_19:1105807-1106568:+|nuORF	REV__ENST00000588919.5_1_19:1105807-1106568:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.787841796875	2	539.789327	1077.5641	-0.34692	-0.00018726	-3.2056	-0.0017304	-3.5525	-0.0019176	539.7874568088253	68.846	1.1104	68.553	68.092	69.202	-0.29267					80	28	4	0	0	0	0.43973	1	8223	8223		63.306	4.5243	1	4397400	+		12887	26142	8983	9001	14293	14293					0.028420894624787252
EMPIRGDLV	9	Unmodified	_EMPIRGDLV_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.77490234375	2	515.273509	1028.53247	-1.0107	-0.00052079	2.8645	0.001476	1.8538	0.00095519	515.2759280836221	68.886	0.82372	68.624	68.26	69.084	-0.26165					46	19	3	0	0	0	0.42604	1	7985	7985		64.207	2.0999	1	1515500			12888	6817	8984	9002	14294	14294					0.019340967085327065
EMPLHQRR	8	Unmodified	_EMPLHQRR_					0	0	0			REV__nc|ENSG00000158019|Q9NXR7-3|BABAM2	REV__nc|ENSG00000158019|Q9NXR7-3|BABAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2738037109375	2	533.782367	1065.55018	-1.2469	-0.00066559	1.4168	0.00075626	0.16987	9.0671E-05	533.7822385319853	83.793	0.77734	83.793	83.351	84.128	0					27	17	2	0	0	0	0.027866	1	10433	10433		30.504	1.3541	1	173240	+		12889	36818	8985	9003	14295	14295					0.02002856754052118
EMPLLFVL	8	Unmodified	_EMPLLFVL_					0	0	0			REV__ENST00000543016.1_1_12:124101121-124103187:+|nuORF	REV__ENST00000543016.1_1_12:124101121-124103187:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	481.274989	960.535426	-0.46313	-0.00022289	-3.3352	-0.0016051	-3.7983	-0.001828	481.2732970903533	31.752	0.64658	31.821	31.445	32.092	0.068962					27	15	3	0	0	0	0.027866	1	2132	2132		35.201	6.0512	1	206480	+		12890	21914	8986	9004	14296	14296					0.05357971833359443
EMPPCRRGV	9	Unmodified	_EMPPCRRGV_					0	0	0		ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3041381835938	2	522.757504	1043.50045	-0.62612	-0.00032731	-0.18442	-9.6408E-05	-0.81054	-0.00042371	522.7573969289801	85.088	0.49754	85.113	84.829	85.327	0.025528					18	11	2	0	0	0	0.024457	1	10555	10555		29.15	4.6304	1	228690			12891	4790	8987	9005	14297	14297					-0.019555942462375242
EMPQDQTQT	9	Unmodified	_EMPQDQTQT_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7872314453125	2	539.229496	1076.44444	-0.32577	-0.00017566	1.8305	0.00098708	1.5048	0.00081141	539.2304120587927	67.717	1.2757	67.717	67.245	68.52	0					50	32	2	0	0	0	0.024447	1	8203	8203		25.574	0	1	166090	+		12892	20665	8988	9006	14298	14298					-0.09072568672741
EMPQDQTQT	9	Unmodified	_EMPQDQTQT_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.229496	1076.44444	-0.42367	-0.00022845	1.8784	0.0010129	1.4547	0.00078441	539.2304001011229	67.847	1.2618	67.558	67.148	68.409	-0.28834	-0.10805	-4.1418E-07	NaN	39.253	52	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151980	+		12893	20665	8988	9006							-0.09072568672741
EMPQDQTQT	9	Unmodified	_EMPQDQTQT_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.229496	1076.44444	-0.4168	-0.00022475	1.9175	0.001034	1.5007	0.00080923	539.2304974078967	67.7	1.4654	67.723	67.112	68.578	0.023911	0.057247	4.1828E-05	NaN	39.253	58	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267150	+		12894	20665	8988	9006							-0.09072568672741
EMPYLNLV	8	Unmodified	_EMPYLNLV_					0	0	0			REV__LRCH1|p.G484E|1|0.13|ENSG00000136141|chr13:46705118-46705118|G/A|missense_variant	REV__LRCH1|p.G484E|1|0.13|ENSG00000136141|chr13:46705118-46705118|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.754150390625	2	489.751879	977.489204	0.56098	0.00027474	3.1974	0.0015659	3.7584	0.0018407	489.7533015600643	51.342	0.60926	51.23	50.973	51.583	-0.11163					41	15	4	0	0	0	0.77775	1	5282	5282		60.972	5.4677	1	1635600	+		12895	36319	8989	9007	14299	14299					-0.0004409306874322283
EMPYLNLV	8	Unmodified	_EMPYLNLV_					0	0	0			REV__LRCH1|p.G484E|1|0.13|ENSG00000136141|chr13:46705118-46705118|G/A|missense_variant	REV__LRCH1|p.G484E|1|0.13|ENSG00000136141|chr13:46705118-46705118|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.7538146972656	2	489.751879	977.489204	1.3705	0.00067121	2.433	0.0011916	3.8035	0.0018628	489.7529313164969	51.451	0.72445	51.267	50.981	51.705	-0.18405					39	18	3	0	0	0	0.56592	1	5287	5287		79.451	15.244	1	1440100	+		12896	36319	8989	9007	14300	14300					-0.0004409306874322283
EMQEKLLK	8	Unmodified	_EMQEKLLK_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.78155517578125	2	509.78371	1017.55287	-1.1702	-0.00059657	-3.356	-0.0017108	-4.5262	-0.0023074	509.7818890467402	43.816	0.60928	43.816	43.511	44.12	0					53	16	4	0	0	0	0.47727	1	4138	4138		87.696	2.5356	1	4575800			12897	2460	8990	9008	14301	14301					0.04479267368355977
EMQKDLELL	9	Unmodified	_EMQKDLELL_					0	0	0		nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF;nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66	nc|ENSG00000166436|O15016-3|TRIM66	nc|ENSG00000166436|O15016-3|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.8147583007812	2	559.791732	1117.56891	0.50047	0.00028016	-2.6712	-0.0014953	-2.1707	-0.0012151	560.2919767463452	82.863	0.56154	82.643	82.522	83.083	-0.22015					17	12	2	0	0	0	0.023635	1	10019	10019		66.429	4.3219	1	42583			12898	7559	8991	9009	14302	14302					0.01482928814607476
EMQLQEVAW	9	Unmodified	_EMQLQEVAW_					0	0	0			REV__nc|ENSG00000283980|A0A1W2PPG7|GNG14	REV__nc|ENSG00000283980|A0A1W2PPG7|GNG14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.811767578125	2	567.268424	1132.5223	-0.75533	-0.00042848	0.85513	0.00048509	0.099795	5.6611E-05	567.2687941878006	57.363	1.4295	57.363	56.174	57.603	0					98	39	4	0	0	0	0.024344	1	6254	6254		64.207	11.271	1	1485300	+		12899	29250	8992	9010	14303	14303					-0.03866511016713048
EMQTLRVAL	9	Unmodified	_EMQTLRVAL_					0	0	0		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8004150390625	2	530.794609	1059.57467	-0.34557	-0.00018342	0.9457	0.00050197	0.60014	0.00031855	530.7949316671137	95.904	1.5554	95.747	95.4	96.955	-0.15646					84	35	3	0	0	0	0.6504	1	11816	11816		49.442	1.5259	1	903670			12900	9393	8993	9011	14304	14304					0.047260721169323006
EMRGVSSHPV	10	Unmodified	_EMRGVSSHPV_					0	0	0		nc|ENSG00000165633|Q8IW00-2|VSTM4	nc|ENSG00000165633|Q8IW00-2|VSTM4	nc|ENSG00000165633|Q8IW00-2|VSTM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.2791137695312	2	549.771665	1097.52878	-0.23734	-0.00013048	-3.0939	-0.0017009	-3.3312	-0.0018314	549.7696109791606	77.627	0.6594	77.627	77.382	78.042	0					36	15	4	0	0	0	0.03519	1	9600	9600		37.812	6.2817	1	653950			12901	18467	8994	9012	14305	14305					-0.01608573065300334
EMRLQGALK	9	Unmodified	_EMRLQGALK_					0	0	0			REV__nc|ENSG00000096996|P42701-3|IL12RB1	REV__nc|ENSG00000096996|P42701-3|IL12RB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2965698242188	2	523.294776	1044.575	0.019316	1.0108E-05	-0.061449	-3.2156E-05	-0.042133	-2.2048E-05	523.2947868914312	35.908	1.4191	35.692	35.31	36.729	-0.21661					102	37	5	0	0	0	0.6504	1	2795	2795		49.442	1.482	1	19574000	+		12902	20991	8995	9013	14306	14306					0.05449491836770903
EMRRHEML	8	Oxidation (M)	_EMRRHEM(Oxidation (M))L_		EMRRHEM(1)L		EM(-93)RRHEM(93)L	0	0	1		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2653198242188	2	559.265693	1116.51683	-0.28749	-0.00016078	-0.053645	-3.0002E-05	-0.34113	-0.00019078	559.2653461455658	83.574	3.761	83.574	83.138	86.899	0					216	88	3	0	0	0	0.33369	1	10457	10457		106.42	7.8332	2	951100			12903	1642	8996	9014	14307	14307		59			-0.03676513080154109
EMRRRRVRRRK	11	Unmodified	_EMRRRRVRRRK_					0	0	0			REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.204833984375	4	400.498476	1597.9648	1.002	0.0004013	-2.4782	-0.00099253	-1.4762	-0.00059123	400.74822732804375	17.3	0.302	17.093	16.963	17.265	-0.20669					7	5	2	0	0	0	0.024902	1	162	162		3.4087	0.19739	1	9159	+		12904	28552	8997	9015	14308	14308					0.18973271290087723
EMSDVTFLVE	10	Unmodified	_EMSDVTFLVE_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2698364257812	2	585.273372	1168.53219	-0.017655	-1.0333E-05	-2.9648	-0.0017352	-2.9825	-0.0017456	585.2713254644489	84.937	1.2965	84.8	84.449	85.745	-0.13753					67	30	3	0	0	0	0.82838	1	10294	10294		58.782	0	1	797850			12905	7494	8998	9016	14309	14309					-0.04533367801991517
EMSDVTFLVE	10	Unmodified	_EMSDVTFLVE_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	585.273372	1168.53219	-0.47396	-0.0002774	-2.3861	-0.0013965	-2.8601	-0.0016739	585.2719082610134	84.967	0.91573	84.967	84.669	85.584	0	0.1063	6.4049E-05	NaN	58.782	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553520			12906	7494	8998	9016							-0.04533367801991517
EMSDVTFLVE	10	Unmodified	_EMSDVTFLVE_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	585.273372	1168.53219	-1.5885	-0.00092969	-1.5222	-0.00089088	-3.1106	-0.0018206	585.2723868030944	84.9	0.91761	84.829	84.592	85.509	-0.070564	-0.030875	0.0010753	NaN	58.782	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461170			12907	7494	8998	9016							-0.04533367801991517
EMSDVTFLVE	10	Unmodified	_EMSDVTFLVE_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	585.273372	1168.53219	0.094246	5.516E-05	-3.0327	-0.001775	-2.9385	-0.0017198	585.271486293439	84.897	0.83244	84.922	84.662	85.494	0.025528	0.061982	-0.00069283	NaN	58.782	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466730			12908	7494	8998	9016							-0.04533367801991517
EMSDVTFLVE	10	Unmodified	_EMSDVTFLVE_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.273372	1168.53219	0.14401	8.4285E-05	-2.9349	-0.0017177	-2.7909	-0.0016334	585.27136902245	85.062	0.9187	84.859	84.418	85.336	-0.20329	-0.0016076	-0.0005783	NaN	58.782	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590610			12909	7494	8998	9016							-0.04533367801991517
EMSDVTFLVE	10	Unmodified	_EMSDVTFLVE_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.273372	1168.53219	0.025623	1.4997E-05	-2.5235	-0.001477	-2.4979	-0.001462	585.2714270176423	84.944	0.95491	84.785	84.446	85.401	-0.15869	-0.07517	-9.6808E-05	NaN	58.782	70	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657980			12910	7494	8998	9016							-0.04533367801991517
EMSQLVECI	9	Unmodified	_EMSQLVECI_					0	0	0		ENST00000319017.4_1_3:48897030-48900022:-|nuORF	ENST00000319017.4_1_3:48897030-48900022:-|nuORF	ENST00000319017.4_1_3:48897030-48900022:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.775390625	2	526.24356	1050.47257	0.36306	0.00019106	0.79989	0.00042094	1.163	0.000612	526.7457573327725	59.522	0.5271	59.273	58.93	59.457	-0.24842					17	12	2	0	0	0	0.024374	1	6537	6537		58.782	8.7574	1	68907			12911	12176	8999	9017	14310	14310					-0.05064962017013386
EMSRIVLLW	9	Unmodified	_EMSRIVLLW_					0	0	0			REV__ENST00000427525.2_1_15:85175388-85177573:+|nuORF	REV__ENST00000427525.2_1_15:85175388-85177573:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.7628784179688	2	573.820627	1145.6267	-0.091805	-5.2679E-05	-2.2033	-0.0012643	-2.2951	-0.001317	573.8194686063896	69.85	0.82629	69.599	69.317	70.143	-0.25063					46	19	4	0	0	0	0.024323	1	8128	8128		44.117	0	1	743940	+		12912	32300	9000	9018	14311	14311					0.05971235530682861
EMSVFALGII	10	Oxidation (M)	_EM(Oxidation (M))SVFALGII_		EM(1)SVFALGII		EM(71)SVFALGII	0	0	1		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2919311523438	2	548.291368	1094.56818	-0.10431	-5.7194E-05	0.090593	4.9671E-05	-0.013721	-7.5231E-06	548.2912874589512	72.393	1.0181	72.393	72.054	73.072	0					57	24	4	0	0	0	0.65054	1	8810	8810		71.296	9.1883	1	8457700			12913	10372	9001	9019	14312	14312		439			0.02468134165542324
EMTDDMDS	8	Unmodified	_EMTDDMDS_					0	0	0		ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1;ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000166840|ENST00000532726|GLYATL1;ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000166840|ENST00000532726|GLYATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.28802490234375	2	472.154608	942.294663	0.16825	7.9439E-05	-2.0665	-0.00097571	-1.8983	-0.00089627	472.1525203695466	94.174	0.31447	94.173	94.032	94.347	-0.00022888					11	7	2	0	0	0	0.027866	1	11967	11967		20.482	7.5226	1	43765			12914	7614;10888	9002	9020	14313	14313					-0.17879257006848093
EMTFTSVLS	9	Unmodified	_EMTFTSVLS_					0	0	0			REV__ENST00000368989.6_2_10:124187820-124189451:+|nuORF	REV__ENST00000368989.6_2_10:124187820-124189451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7457580566406	2	507.74425	1013.47395	-0.53586	-0.00027208	-4.1674	-0.002116	-4.7032	-0.002388	507.7418393611033	82.06	0.49106	82.06	81.83	82.321	0					17	11	2	0	0	0	0.024487	1	10242	10242		24.203	0	1	56816	+		12915	21678	9003	9021	14314	14314					-0.0322500465659914
EMTLWLRRRLR	11	Unmodified	_EMTLWLRRRLR_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.9688415527344	3	510.633033	1528.87727	0.29468	0.00015048	2.5137	0.0012836	2.8083	0.001434	510.63411234326145	103.04	1.4676	102.92	102.45	103.92	-0.12723					85	34	3	0	0	0	1.1092	1	12883	12883		8.7993	0.39205	1	385250	+		12916	22734	9004	9022	14315	14315					0.13398632575967895
EMTMCALLAK	10	Unmodified	_EMTMCALLAK_					0	0	0		ENSG00000139865|ENST00000553443|TTC6;nc|ENSG00000139865|Q86TZ1|TTC6;nc|ENSG00000139865|Q86TZ1-2|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.728759765625	2	555.771431	1109.52831	-0.61115	-0.00033966	-3.8025	-0.0021133	-4.4137	-0.002453	555.7696563571253	56.689	1.8129	56.525	55.806	57.619	-0.16431					68	49	2	0	0	0	0.03519	1	6454	6454		74.255	26.598	1	263010			12917	5372	9005	9023	14316	14316					-0.02207452101038143
EMTQIMFEV	9	Unmodified	_EMTQIMFEV_					0	0	0		ENST00000415794.1_1_3:139212993-139213512:+|nuORF	ENST00000415794.1_1_3:139212993-139213512:+|nuORF	ENST00000415794.1_1_3:139212993-139213512:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8275146484375	2	564.25921	1126.50387	-0.40743	-0.0002299	-1.4822	-0.00083637	-1.8897	-0.0010663	564.2584824131329	31.173	0.4018	30.988	30.66	31.062	-0.18503					11	9	2	0	0	0	0.024488	1	2016	2016		40.058	13.365	1	78128			12918	13886	9006	9024	14317	14317					-0.05432388982944758
EMTSKQQR	8	Unmodified	_EMTSKQQR_					0	0	0		nc|nan|Q6X4T0-2|C12orf54;ENSG00000177627|ENST00000548364|C12orf54	nc|nan|Q6X4T0-2|C12orf54	nc|nan|Q6X4T0-2|C12orf54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.78204345703125	2	504.250566	1006.48658	-0.83725	-0.00042218	2.7325	0.0013779	1.8953	0.0009557	504.2513734918619	47.398	0.49424	47.457	47.214	47.708	0.059097					22	14	3	0	0	0	0.027866	1	4703	4703		53.351	22.848	1	179630			12919	8758	9007	9025	14318	14318					-0.01640548473687886
EMVFDEQEV	9	Unmodified	_EMVFDEQEV_					0	0	0			REV__nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	REV__nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.2767944335938	2	563.242072	1124.46959	-0.91948	-0.00051789	-4.1205	-0.0023209	-5.04	-0.0028387	563.2394804218974	81.66	0.36295	81.685	81.536	81.899	0.025719					12	8	2	0	0	0	0.020356	1	10085	10085		115.49	10.747	1	94542	+		12920	36518	9008	9026	14319	14319					-0.08766513870159542
EMVIYIPQ	8	Unmodified	_EMVIYIPQ_					0	0	0			REV__nc|ENSG00000182511|P07332-2|FES	REV__nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2766418457031	2	496.759704	991.504854	-0.48186	-0.00023937	0.70539	0.00035041	0.22353	0.00011104	496.7599287887579	84.989	0.53948	84.931	84.774	85.313	-0.057617					17	12	2	0	0	0	0.027866	1	10624	10624		20.482	6.7065	1	88726	+		12921	27483	9009	9027	14320	14320					0.008761934483004552
EMVKEVGTET	10	Unmodified	_EMVKEVGTET_					0	0	0			REV__ENST00000310473.7_1_11:73692559-73694259:-|nuORF	REV__ENST00000310473.7_1_11:73692559-73694259:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.3137817382812	2	561.770997	1121.52744	0.46032	0.0002586	-3.1856	-0.0017896	-2.7253	-0.001531	561.7690878742465	70.313	0.91719	70.313	70.188	71.105	0					33	22	2	0	0	0	0.03519	1	8531	8531		41.427	9.4718	1	426800	+		12922	30186	9010	9028	14321	14321					-0.028462519447202794
EMVKKQVKV	9	Oxidation (M)	_EM(Oxidation (M))VKKQVKV_		EM(1)VKKQVKV		EM(74)VKKQVKV	0	0	1		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1;ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8247680664062	2	552.825909	1103.63727	-0.28391	-0.00015695	-3.6547	-0.0020204	-3.9386	-0.0021774	552.823848959237	75.596	1.7013	75.338	75.033	76.734	-0.25866					119	41	5	0	0	0	0.31037	1	8929	8929		74.255	10.048	1	11988000			12923	4046	9011	9029	14322	14322		158			0.08959218185100326
EMVRRVDL	8	Unmodified	_EMVRRVDL_					0	0	0			REV__nc|ENSG00000130810|Q9NQ55-2|PPAN	REV__nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.2768859863281	2	509.279126	1016.5437	-0.11199	-5.7033E-05	-4.2009	-0.0021394	-4.3129	-0.0021965	509.2768713770091	70.986	1.117	70.997	70.725	71.842	0.010735					76	28	5	0	0	0	0.71833	2	8519	8519;8530		65.803	1.9564	1	6957400	+		12924	23158	9012	9030	14323;14324	14323					0.03608918802683547
EMVVVAIQI	9	Unmodified	_EMVVVAIQI_					0	0	0		ENSG00000162551|ENST00000374840|ALPL;nc|ENSG00000162551|P05186-2|ALPL;nc|ENSG00000162551|P05186-3|ALPL	ENSG00000162551|ENST00000374840|ALPL	ENSG00000162551|ENST00000374840|ALPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2918395996094	2	501.288628	1000.5627	-0.38964	-0.00019532	3.5736	0.0017914	3.184	0.0015961	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.72875	1	10576	10576		44.117	4.864	1	8504000			12925	6952	9013	9031	14325	14325					0.06244455373735036
EMWHPTLI	8	Unmodified	_EMWHPTLI_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.7854614257812	2	513.757495	1025.50044	-1.2629	-0.00064881	-2.3667	-0.0012159	-3.6295	-0.0018647	513.7564638261758	38.31	0.25143	38.31	38.222	38.473	0					8	6	2	0	0	0	0.027866	1	3191	3191		57.811	20.652	1	45496			12926	1477	9014	9032	14326	14326					-0.011292709745930551
EMYRAITFL	9	Unmodified	_EMYRAITFL_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6;REV__PIK3R3-ZSWIM5|1|fusion	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.2966918945312	2	572.296985	1142.57942	-1.074	-0.00061462	0.49303	0.00028216	-0.58092	-0.00033246	572.2972625281665	64.876	1.6108	64.913	64.555	66.166	0.037376					97	43	3	0	0	0	0.047345	1	7610	7610		129.68	17.272	1	14793000	+		12927	23114;25437	9015	9033	14327	14327					0.013829562596811229
EMYSLIMHG	9	Unmodified	_EMYSLIMHG_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__UBE3C-PTPRN2|1|fusion	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8316650390625	2	540.74627	1079.47799	-0.39882	-0.00021566	1.5619	0.00084461	1.1631	0.00062894	540.747018509014	75.489	0.64995	75.499	75.25	75.9	0.010376					35	17	3	0	0	0	0.024294	1	9248	9248		55.504	14.726	1	1075500	+		12928	24992;37751	9016	9034	14328	14328					-0.05857238434509782
EMYSLIMHG	9	Unmodified	_EMYSLIMHG_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__UBE3C-PTPRN2|1|fusion	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	540.74627	1079.47799	-0.69761	-0.00037723	0.54414	0.00029424	-0.15347	-8.2988E-05	540.746388096594	75.729	0.89917	75.456	75.144	76.043	-0.27266	0.0066496	-0.00016869	NaN	55.504	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2038300	+		12929	24992;37751	9016	9034							-0.05857238434509782
EMYSLIMHG	9	Unmodified	_EMYSLIMHG_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__UBE3C-PTPRN2|1|fusion	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	540.74627	1079.47799	-0.71914	-0.00038887	0.63334	0.00034248	-0.085797	-4.6394E-05	540.7464515689823	75.587	1.2731	75.412	74.986	76.259	-0.17548	-0.037435	-7.2223E-05	NaN	55.504	62	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2017500	+		12930	24992;37751	9016	9034							-0.05857238434509782
ENADIYCLP	9	Unmodified	_ENADIYCLP_					0	0	0		LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|29|3|sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|29|3|sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|29|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.271728515625	2	519.23405	1036.45355	0.54935	0.00028524	-0.32038	-0.00016635	0.22897	0.00011889	519.2337695332126	85.101	0.83356	85.101	84.751	85.584	0					28	19	2	0	0	0	0.024412	1	10683	10683		31.955	6.5047	1	167950			12931	17932	9017	9035	14329	14329					-0.06322175316404355
ENAEFMRNFQK	11	Unmodified	_ENAEFMRNFQK_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7906494140625	3	471.890838	1412.65068	-0.021923	-1.0345E-05	2.8458	0.0013429	2.8238	0.0013325	471.892129138916	25.862	0.55495	25.862	25.569	26.124	0					29	12	3	0	0	0	0.024759	1	1233	1233		23.378	0	1	237370			12932	2169	9018	9036	14330	14330					-0.03913575773617595
ENAFNPEGTA	10	Unmodified	_ENAFNPEGTA_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2586059570312	2	525.230353	1048.44615	-0.84061	-0.00044152	-2.5142	-0.0013205	-3.3548	-0.001762	525.2288396203223	26.587	0.66542	26.587	26.243	26.908	0					33	15	3	0	0	0	0.03519	1	1333	1333		41.427	0	1	218120	+		12933	29106	9019	9037	14331	14331					-0.07613191592440671
ENALIRPI	8	Unmodified	_ENALIRPI_					0	0	0		CON__P07224	CON__P07224	CON__P07224	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.7569274902344	2	463.276909	924.539266	0.65792	0.0003048	-0.56156	-0.00026016	0.096363	4.4643E-05	463.2765837068637	20.716	0.54328	20.52	20.138	20.681	-0.19577					16	10	2	0	0	0	0.027866	1	581	581		29.15	8.6677	1	86538		+	12934	512	9020	9038	14332	14332					0.07397777651419801
ENALNTLIEL	10	Unmodified	_ENALNTLIEL_					0	0	0			REV__nc|ENSG00000132842|O00203-3|AP3B1	REV__nc|ENSG00000132842|O00203-3|AP3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.2747192382812	2	565.308603	1128.60265	-1.0431	-0.00058968	-2.4328	-0.0013753	-3.4759	-0.001965	565.3073434564149	60.476	0.70379	60.476	59.988	60.692	0					33	18	2	0	0	0	0.03519	1	6935	6935		29.17	0	1	523070	+		12935	23324	9021	9039	14333	14333					0.04349673578008151
ENALRGGYS	9	Unmodified	_ENALRGGYS_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1;KCNMA1|p.P1089L|1|0.2|ENSG00000156113|chr10:76891601-76891601|G/A|missense_variant	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2877197265625	2	483.735606	965.456658	-0.019258	-9.316E-06	0.19745	9.5513E-05	0.17819	8.6197E-05	483.7355071370077	24.493	0.9382	24.571	24.275	25.213	0.078344					33	20	3	0	0	0	0.024397	1	1091	1091		47.657	1.6851	1	205170			12936	6514	9022	9040	14334	14334					-0.027451641473703603
ENALRGGYS	9	Unmodified	_ENALRGGYS_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1;KCNMA1|p.P1089L|1|0.2|ENSG00000156113|chr10:76891601-76891601|G/A|missense_variant	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.735606	965.456658	-0.15738	-7.6128E-05	0.082425	3.9872E-05	-0.074951	-3.6256E-05	483.7356350033375	24.89	0.43676	24.663	24.494	24.931	-0.22683	0.095391	-0.00044504	NaN	56.721	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98664			12937	6514	9022	9040							-0.027451641473703603
ENALRGGYS	9	Unmodified	_ENALRGGYS_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1;KCNMA1|p.P1089L|1|0.2|ENSG00000156113|chr10:76891601-76891601|G/A|missense_variant	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.735606	965.456658	-0.20177	-9.7602E-05	-0.084979	-4.1107E-05	-0.28675	-0.00013871	483.7355360264378	24.633	0.56643	24.458	24.21	24.777	-0.17484	-0.11007	-0.000607	NaN	56.721	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148800			12938	6514	9022	9040							-0.027451641473703603
ENALRGGYS	9	Unmodified	_ENALRGGYS_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1;KCNMA1|p.P1089L|1|0.2|ENSG00000156113|chr10:76891601-76891601|G/A|missense_variant	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.735606	965.456658	2.1781	0.0010536	-2.6135	-0.0012643	-0.43541	-0.00021062	483.7341003134264	24.728	0.43743	24.547	24.374	24.811	-0.18089	-0.021102	-0.0030533	NaN	56.721	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151600			12939	6514	9022	9040							-0.027451641473703603
ENANFGRLI	9	Unmodified	_ENANFGRLI_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2900390625	2	517.274898	1032.53524	-0.3541	-0.00018317	-1.6829	-0.00087051	-2.037	-0.0010537	517.7771805979779	33.84	0.23214	33.836	33.676	33.908	-0.0045624					7	5	2	0	0	0	0.024436	1	2469	2469		30.504	10.507	1	47785	+		12940	27318	9023	9041	14335	14335					0.020276881577274253
ENANFGRLI	9	Unmodified	_ENANFGRLI_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2898559570312	2	517.274898	1032.53524	-0.68885	-0.00035633	-3.0819	-0.0015942	-3.7707	-0.0019505	517.2702491050937	33.78	0.48037	33.837	33.615	34.096	0.056568					23	11	3	0	0	0	0.024354	1	2434	2434		47.916	10.756	1	53329	+		12941	27318	9023	9041	14336	14336					0.020276881577274253
ENAPKITL	8	Unmodified	_ENAPKITL_					0	0	0		ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.7898254394531	2	443.255643	884.496732	0.15912	7.0532E-05	0.74706	0.00033114	0.90618	0.00040167	443.2555449328581	30.641	0.58957	30.492	30.219	30.809	-0.14952					26	13	3	0	0	0	0.027866	1	1930	1930		45.972	5.1941	1	199400			12942	6524	9024	9042	14337	14337					0.04986382523202337
ENARVRII	8	Unmodified	_ENARVRII_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3105773925781	2	485.793258	969.571963	0.088481	4.2983E-05	-4.1085	-0.0019959	-4.0201	-0.0019529	485.79123982053534	74.791	0.72035	74.528	74.054	74.774	-0.26326					31	16	3	0	0	0	0.027866	1	8857	8857		30.504	0	1	369860			12943	8503	9025	9043	14338	14338					0.08595984774296994
ENATAILL	8	Unmodified	_ENATAILL_					0	0	0			REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.5822448730469	2	422.742368	843.470183	0.054982	2.3243E-05	1.1476	0.00048515	1.2026	0.0005084	422.7436027616172	43.917	0.74933	43.954	43.492	44.241	0.0369					28	20	2	0	0	0	0.027866	1	4118	4118		16.473	6.2079	1	321730	+		12944	21862	9026	9044	14339	14339					0.04218693631867154
ENATLRRR	8	Unmodified	_ENATLRRR_					0	0	0		nc|ENSG00000198933|A7MCY6-2|TBKBP1;ENSG00000198933|ENST00000578982|TBKBP1	nc|ENSG00000198933|A7MCY6-2|TBKBP1	nc|ENSG00000198933|A7MCY6-2|TBKBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7537536621094	2	508.291414	1014.56827	-0.63205	-0.00032127	2.687	0.0013658	2.055	0.0010445	508.29217812328244	28.857	0.67857	28.861	28.672	29.351	0.0031357					29	16	3	0	0	0	0.027866	1	1779	1779		49.442	8.6634	1	327160			12945	10256	9027	9045	14340	14340					0.06157315000427843
ENAVHFLPL	9	Unmodified	_ENAVHFLPL_					0	0	0			REV__ENST00000396623.7_1_8:67380853-67381021:+|nuORF	REV__ENST00000396623.7_1_8:67380853-67381021:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2743530273438	2	520.282192	1038.54983	-0.9163	-0.00047674	-1.5898	-0.00082717	-2.5061	-0.0013039	520.2817731163125	37.583	0.8341	37.52	37.268	38.102	-0.063385					36	23	3	0	0	0	0.024477	1	3160	3160		20.947	6.0821	1	506830	+		12946	31743	9028	9046	14341	14341					0.032097603058673485
ENCKKLLK	8	Unmodified	_ENCKKLLK_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.7892761230469	2	488.28642	974.558287	0.34983	0.00017082	3.0278	0.0014784	3.3776	0.0016493	488.28787260552525	100.92	0.89812	100.75	100.16	101.05	-0.17178					33	24	2	0	0	0	0.027866	1	12464	12464		38.806	1.647	1	370970			12947	10044	9029	9047	14342	14342					0.0699899095083083
ENCLYLDLL	9	Unmodified	_ENCLYLDLL_					0	0	0		ENST00000375326.8_1_9:97365595-97365649:-|nuORF	ENST00000375326.8_1_9:97365595-97365649:-|nuORF	ENST00000375326.8_1_9:97365595-97365649:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.2533569335938	2	548.273175	1094.5318	-0.40274	-0.00022081	3.0017	0.0016457	2.5989	0.0014249	548.2744230621473	52.302	1.2517	52.155	51.881	53.132	-0.14735					74	32	3	0	0	0	0.024025	1	5570	5570		62.107	7.3311	1	1505100			12948	13156	9030	9048	14343	14343					-0.011687427311699139
ENCMYVVN	8	Unmodified	_ENCMYVVN_					0	0	0		KLHL31|p.E590Sfs*29|1|0.29|ENSG00000124743|chr6:53651736-53651736|G/-|frameshift_variant;ENSG00000124743|ENST00000370905|KLHL31	KLHL31|p.E590Sfs*29|1|0.29|ENSG00000124743|chr6:53651736-53651736|G/-|frameshift_variant	KLHL31|p.E590Sfs*29|1|0.29|ENSG00000124743|chr6:53651736-53651736|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78826904296875	2	486.201696	970.388838	0.35784	0.00017398	-0.75479	-0.00036698	-0.39695	-0.000193	486.20121558413916	47.201	0.52483	47.048	46.776	47.3	-0.15301					21	13	2	0	0	0	0.027866	1	4694	4694		56.721	5.3856	1	200080			12949	4072	9031	9049	14344	14344					-0.09754073394049101
ENCQYRVT	8	Unmodified	_ENCQYRVT_					0	0	0			REV__ENSG00000130287|ENST00000252575|NCAN	REV__ENSG00000130287|ENST00000252575|NCAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7140808105469	2	506.729466	1011.44438	0.0029344	1.4869E-06	-3.4817	-0.0017643	-3.4787	-0.0017628	506.72741201754735	34.354	0.61506	34.13	33.844	34.459	-0.22412					33	14	4	0	0	0	0.027866	1	2518	2518		23.042	6.5693	1	946200	+		12950	23098	9032	9050	14345	14345					-0.0608852388206742
ENCREEQLI	9	Unmodified	_ENCREEQLI_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.8109741210938	2	567.266413	1132.51827	-0.13118	-7.4416E-05	3.8598	0.0021895	3.7286	0.0021151	567.2684881959935	55.124	1.2297	55.124	54.944	56.174	0					82	34	4	0	0	0	0.024367	1	6232	6232		36.447	1.2947	1	2537100			12951	5868	9033	9051	14346	14346					-0.0426860051040876
ENCRVDLTFEV	11	Unmodified	_ENCRVDLTFEV_					0	0	0			REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.74578857421875	3	442.211577	1323.6129	-0.13436	-5.9416E-05	3.1974	0.0014139	3.063	0.0013545	442.213051525552	24.059	0.82626	23.844	23.51	24.336	-0.2151					45	18	4	0	0	0	0.024765	1	1068	1068		39.873	1.1591	1	177350	+		12952	35254	9034	9052	14347	14347					-0.035960867591029455
ENCVTEYMKAI	11	Unmodified	_ENCVTEYMKAI_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7796325683594	3	434.201913	1299.58391	1.8503	0.00080341	-1.0791	-0.00046856	0.77118	0.00033485	434.201548803095	36.767	0.76253	36.557	36.082	36.844	-0.2092					37	18	3	0	0	0	0.024743	1	2841	2841		23.378	0	1	222900			12953	8195	9035	9053	14348	14348					-0.05389947379694604
ENCWHLDE	8	Unmodified	_ENCWHLDE_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6;PIK3R3-ZSWIM5|1|fusion;ENSG00000162415|ENST00000359600|ZSWIM5;ZSWIM5|p.R1079Lfs*7|1|0.07|ENSG00000162415|chr1:45018776-45018777|-/AAACA|frameshift_variant	ENSG00000130449|ENST00000252744|ZSWIM6;PIK3R3-ZSWIM5|1|fusion	PIK3R3-ZSWIM5|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2579956054688	2	523.205824	1044.39709	-1.0596	-0.0005544	1.1874	0.00062128	0.12782	6.6876E-05	523.2073818770104	24.145	0.21553	24.145	23.994	24.209	0					5	4	2	0	0	0	0.027866	1	1031	1031		23.042	0	1	17434			12954	4420;6941	9036	9054	14349	14349					-0.12332803153071836
ENDANSHNS	9	Unmodified	_ENDANSHNS_					0	0	0			REV__ENSG00000132677|ENST00000537040|RHBG	REV__ENSG00000132677|ENST00000537040|RHBG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7854309082031	2	494.191759	986.368966	-1.0688	-0.00052818	1.9859	0.0009814	0.91711	0.00045323	494.19259613376556	24.965	0.9165	24.93	24.681	25.598	-0.034395					39	21	3	0	0	0	0.024397	1	1197	1197		31.53	0	1	435160	+		12955	23308	9037	9055	14350	14350					-0.12476409808800781
ENDCRINQREV	11	Unmodified	_ENDCRINQREV_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2686767578125	3	459.217613	1374.63101	0.081128	3.7255E-05	2.4544	0.0011271	2.5355	0.0011643	459.21867406882967	48.339	0.76605	48.152	47.787	48.553	-0.18684					27	20	2	0	0	0	0.02477	1	4753	4753		22.562	5.3948	1	149240			12956	2676	9038	9056	14351	14351					-0.04131951784370358
ENDDIISIN	9	Unmodified	_ENDDIISIN_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2843627929688	2	516.745836	1031.47712	-0.024713	-1.277E-05	-0.4809	-0.00024851	-0.50562	-0.00026128	516.7450174624018	52.71	0.60534	52.521	52.188	52.793	-0.18982					26	14	3	0	0	0	0.024418	1	5508	5508		30.318	3.6248	1	172760	+		12957	25715	9039	9057	14352	14352					-0.037360382782026136
ENDDLAHEL	9	Unmodified	_ENDDLAHEL_					0	0	0		ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;nc|ENSG00000152061|B7ZAP0|RABGAP1L;ENST00000469553.6_1_1:174927262-174959135:+|nuORF;ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000152061|ENST00000681986|RABGAP1L;ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000152061|ENST00000681986|RABGAP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8064575195312	2	528.235635	1054.45672	-0.27494	-0.00014523	0.97327	0.00051411	0.69833	0.00036888	528.2362507113963	49.878	0.41693	49.956	49.697	50.114	0.078587					14	11	2	0	0	0	0.024397	1	5093	5093		31.53	0	1	90389			12958	6245;898	9040	9058	14353	14353					-0.06833208938041935
ENDFDEKSER	10	Unmodified	_ENDFDEKSER_					0	0	0		nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-17|MIER1	nc|ENSG00000198160|Q8N108-17|MIER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.51806640625	3	423.517834	1267.53167	0.17916	7.5878E-05	0.87716	0.00037149	1.0563	0.00044737	423.5180987608157	30.813	0.74059	30.661	30.384	31.124	-0.15231					51	17	4	0	0	0	1.0639	1	1981	1981		37.508	3.4217	1	1128600			12959	10101	9041	9059	14354	14354					-0.09139071197478188
ENDGPGEEV	9	Unmodified	_ENDGPGEEV_					0	0	0		nc|ENSG00000133083|O15075-3|DCLK1;nc|ENSG00000133083|O15075-4|DCLK1;nc|ENSG00000133083|O15075-2|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	nc|ENSG00000133083|O15075-3|DCLK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2715759277344	2	473.193436	944.37232	0.20195	9.5561E-05	0.4293	0.00020314	0.63125	0.0002987	473.19357078296497	34.733	0.4046	34.516	34.305	34.709	-0.21782					13	9	2	0	0	0	0.024337	1	2610	2610		49.536	21.455	1	59311			12960	4680	9042	9060	14355	14355					-0.10209159754788288
ENDHLFLSL	9	Unmodified	_ENDHLFLSL_					0	0	0		ENST00000511816.1_1_17:46928876-46929999:+|nuORF;ENST00000514006.1_1_17:46928486-46929999:+|nuORF;ENST00000509112.1_1_17:46928975-46930413:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2	ENST00000511816.1_1_17:46928876-46929999:+|nuORF	ENST00000511816.1_1_17:46928876-46929999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7952880859375	2	544.274564	1086.53457	-0.80221	-0.00043662	0.91158	0.00049615	0.10937	5.9528E-05	544.2749224498378	54.952	0.45763	54.802	54.608	55.065	-0.15036					23	12	2	0	0	0	0.023417	1	6053	6053		58.782	0	1	701060			12961	5016	9043	9061	14356	14356					-0.005231512819818818
ENDKPAAVNR	10	Unmodified	_ENDKPAAVNR_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.2855224609375	2	557.285994	1112.55744	-0.38071	-0.00021216	-0.041252	-2.2989E-05	-0.42196	-0.00023515	557.2859696019542	24.102	0.87561	24.102	23.866	24.741	0					43	19	4	0	0	0	0.77808	1	1017	1017		62.107	14.148	1	1458100	+		12962	20717	9044	9062	14357	14357					0.0056586783548482344
ENDKPAAVNR	10	Unmodified	_ENDKPAAVNR_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.2854614257812	2	557.285994	1112.55744	-1.2239	-0.00068209	0.79132	0.00044099	-0.43262	-0.00024109	557.2863363549601	24.157	0.79718	24.11	23.826	24.623	-0.047148					56	17	5	0	0	0	0.55353	1	1025	1025		82.241	20.549	1	1389800	+		12963	20717	9044	9062	14358	14358					0.0056586783548482344
ENDKQQLNEK	10	Unmodified	_ENDKQQLNEK_					0	0	0		ENSG00000264424|ENST00000255381|MYH4;MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant	ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.56292724609375	3	415.873841	1244.59969	-0.30666	-0.00012753	3.9137	0.0016276	3.6071	0.0015001	416.2102224039269	28.491	0.24866	28.491	28.406	28.655	0					7	5	2	0	0	0	0.03519	1	1657	1657		37.6	4.5605	1	44181			12964	10964	9045	9063	14359	14359					-0.012822015468145764
ENDPHFII	8	Unmodified	_ENDPHFII_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7820129394531	2	492.742899	983.471246	0.070689	3.4831E-05	4.0671	0.002004	4.1377	0.0020388	492.7461390501774	78.007	0.28896	78.007	77.833	78.122	0					12	6	3	0	0	0	0.027866	1	9638	9638		40.573	0	1	90848		+	12965	6216	9046	9064	14360	14360					-0.02115091999235119
ENDPHFII	8	Unmodified	_ENDPHFII_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.78240966796875	2	492.742899	983.471246	0.90162	0.00044427	-4.3027	-0.0021201	-3.4011	-0.0016759	492.74078052984953	78.188	0.36758	77.996	77.849	78.216	-0.1921					17	8	3	0	0	0	0.027866	1	9627	9627		31.955	6.5047	1	144430		+	12966	6216	9046	9064	14361	14361					-0.02115091999235119
ENDQAEPL	8	Unmodified	_ENDQAEPL_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2198181152344	2	458.206347	914.39814	-0.20712	-9.4906E-05	-1.3745	-0.00062983	-1.5817	-0.00072473	458.2063866981338	40.429	0.36684	40.204	39.965	40.332	-0.225					12	9	2	0	0	0	0.027866	1	3463	3463		21.96	4.5949	1	187500			12967	2102	9047	9065	14362	14362					-0.06248265512510898
ENDSKEDESL	10	Unmodified	_ENDSKEDESL_					0	0	0			REV__OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	REV__OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.24853515625	2	583.246397	1164.47824	-0.2103	-0.00012265	4.172	0.0024333	3.9617	0.0023107	583.248904421307	80.063	0.88266	80.084	79.771	80.654	0.021439					60	20	5	0	0	0	0.64538	1	9875	9875		71.877	7.6702	1	2253200	+		12968	24348	9048	9066	14363	14363					-0.0974186869998448
ENDTHCID	8	Unmodified	_ENDTHCID_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;PTPRT|p.T363Hfs*34|1|0.16|ENSG00000196090|chr20:42677933-42677933|G/-|frameshift_variant	ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000173482|P28827|PTPRM;nc|ENSG00000152894|Q15262|PTPRK;PTPRT|p.T363Hfs*34|1|0.16|ENSG00000196090|chr20:42677933-42677933|G/-|frameshift_variant	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.77532958984375	2	473.682182	945.34981	0.5503	0.00026067	-3.7971	-0.0017986	-3.2468	-0.0015379	473.68025254433445	37.088	0.61035	36.895	36.618	37.229	-0.193					34	15	3	0	0	0	0.027866	1	2941	2941		26.693	0	1	694630			12969	9818;6303;8377;19010	9049	9067	14364	14364					-0.12505082424081593
ENDTHCID	8	Unmodified	_ENDTHCID_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM;nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;PTPRT|p.T363Hfs*34|1|0.16|ENSG00000196090|chr20:42677933-42677933|G/-|frameshift_variant	ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000173482|P28827|PTPRM;nc|ENSG00000152894|Q15262|PTPRK;PTPRT|p.T363Hfs*34|1|0.16|ENSG00000196090|chr20:42677933-42677933|G/-|frameshift_variant	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7744140625	2	473.682182	945.34981	-0.41942	-0.00019867	-2.8989	-0.0013731	-3.3183	-0.0015718	473.68066023529565	36.966	0.70844	36.746	36.405	37.114	-0.2195					37	17	3	0	0	0	0.027866	1	2950	2950		29.15	6.1071	1	768320			12970	9818;6303;8377;19010	9049	9067	14365	14365					-0.12505082424081593
ENEAEYEWAT	10	Unmodified	_ENEAEYEWAT_					0	0	0			REV__ARHGAP27|p.D330Y|1|0.32|ENSG00000159314|chr17:45405753-45405753|C/A|missense_variant	REV__ARHGAP27|p.D330Y|1|0.32|ENSG00000159314|chr17:45405753-45405753|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.19500732421875	3	414.503414	1240.48841	-0.57	-0.00023627	-1.6113	-0.00066787	-2.1813	-0.00090414	414.5027453086706	39.369	0.29882	39.204	39.081	39.379	-0.16458					12	7	2	0	0	0	0.03519	1	3356	3356		23.378	12.816	1	90030	+		12971	19160	9050	9068	14366	14366					-0.12221260974752113
ENEAGCAEPSR	11	Unmodified	_ENEAGCAEPSR_					0	0	0			REV__ENST00000237289.8_2_6:138192615-138195985:+|nuORF	REV__ENST00000237289.8_2_6:138192615-138195985:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.3047485351562	2	581.743302	1161.47205	-1.3525	-0.00078682	4.2086	0.0024483	2.856	0.0016615	581.7455697986143	45.628	0.57586	45.628	45.41	45.986	0					34	16	3	0	0	0	0.024748	1	4491	4491		30.569	10.572	1	598760	+		12972	29434	9051	9069	14367	14367					-0.1022266541249337
ENEALHKMI	9	Unmodified	_ENEALHKMI_					0	0	0		nc|ENSG00000090686|Q86UV5-8|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7761840820312	2	542.776416	1083.53828	-0.32604	-0.00017697	0.18738	0.00010171	-0.13865	-7.5258E-05	542.776414331956	67.603	1.315	67.603	67.285	68.6	0					103	33	6	0	0	0	0.17822	2	8087	8052;8087		93.195	5.4412	1	15261000			12973	18108	9052	9070	14368;14369	14369					-0.00014804779766564025
ENEAQQKLI	9	Unmodified	_ENEAQQKLI_					0	0	0		CHODL|p.E76Q|1|0.21|ENSG00000154645|chr21:18256655-18256655|G/C|missense_variant	CHODL|p.E76Q|1|0.21|ENSG00000154645|chr21:18256655-18256655|G/C|missense_variant	CHODL|p.E76Q|1|0.21|ENSG00000154645|chr21:18256655-18256655|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.784912109375	2	536.785296	1071.55604	-0.50444	-0.00027077	0.046508	2.4965E-05	-0.45793	-0.00024581	536.785266156257	52.713	0.92799	52.805	52.404	53.332	0.091938					63	24	4	0	0	0	0.10464	1	5600	5600		109.48	2.7953	1	2866500			12974	267	9053	9071	14370	14370					0.023122337467157195
ENEDEELLL	9	Unmodified	_ENEDEELLL_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.81787109375	2	552.258776	1102.503	-1.2499	-0.00069028	-1.829	-0.0010101	-3.0789	-0.0017003	552.2576165442096	62.889	0.574	62.65	62.451	63.025	-0.23926					29	13	3	0	0	0	0.024418	1	7309	7309		17.468	0	1	887040	+		12975	23835	9054	9072	14371	14371					-0.044151888266014794
ENEDEELLL	9	Unmodified	_ENEDEELLL_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.258776	1102.503	-0.1269	-7.0081E-05	-3.3252	-0.0018364	-3.4521	-0.0019065	552.256914269333	62.976	0.36928	62.718	62.631	63	-0.25824	0.032413	-0.0010699	NaN	40.058	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329890	+		12976	23835	9054	9072							-0.044151888266014794
ENEDTAGEAL	10	Unmodified	_ENEDTAGEAL_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2947387695312	2	524.725101	1047.43565	-0.79568	-0.00041751	1.328	0.00069684	0.53232	0.00027932	524.7256067402219	29.866	0.6903	29.874	29.556	30.247	0.0086689					25	16	2	0	0	0	0.03519	1	1847	1847		22.58	6.9378	1	165300			12977	1349	9055	9073	14372	14372					-0.0861721903754642
ENEDYDREDI	10	Unmodified	_ENEDYDREDI_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.7449645996094	3	433.177478	1296.5106	-0.84847	-0.00036754	-4.1535	-0.0017992	-5.002	-0.0021667	433.1761950360279	28.402	0.32079	28.157	28.001	28.322	-0.24524					9	7	2	0	0	0	0.03519	1	1636	1636		10.587	0	1	25955	+		12978	21973	9056	9074	14373	14373					-0.1257908129698535
ENEENGEQEAD	11	Unmodified	_ENEENGEQEAD_					0	0	0		nc|ENSG00000187514|P06454|PTMA;ENST00000481928.1_1_2:232576581-232577558:+|nuORF	nc|ENSG00000187514|P06454|PTMA	nc|ENSG00000187514|P06454|PTMA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8466491699219	3	421.825104	1262.45348	-0.06235	-2.6301E-05	0.97306	0.00041046	0.9107	0.00038416	421.82641065924895	33.226	0.31257	33.026	32.896	33.209	-0.20019					13	7	2	0	0	0	0.024723	1	2349	2349		22.562	0.78116	1	39142			12979	18604	9057	9075	14374	14374					-0.1672454857334742
ENEFLLLL	8	Unmodified	_ENEFLLLL_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;VPS53-ABR|1|fusion;EWSR1-ABR|1|fusion	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.7805480957031	2	495.778951	989.543348	0.51243	0.00025405	2.5945	0.0012863	3.1069	0.0015403	495.78005374565015	89.197	1.0102	89.175	88.822	89.833	-0.021645					61	23	4	0	0	0	0.56592	1	11219	11219		79.451	5.4763	1	1633500			12980	6771	9058	9076	14375	14375					0.04815822354487409
ENEFLLLL	8	Unmodified	_ENEFLLLL_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;VPS53-ABR|1|fusion;EWSR1-ABR|1|fusion	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.78204345703125	2	495.778951	989.543348	-0.54409	-0.00026975	3.7467	0.0018575	3.2026	0.0015878	495.7805879371351	90.44	4.2063	90.315	89.416	93.622	-0.12512					197	99	4	0	0	0	0.50717	1	11065	11065		84.916	5.4645	1	1284300			12981	6771	9058	9076	14376	14376					0.04815822354487409
ENEIFKVE	8	Unmodified	_ENEIFKVE_					0	0	0			REV__nc|ENSG00000165259|Q7Z353-2|HDX	REV__nc|ENSG00000165259|Q7Z353-2|HDX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.77142333984375	2	504.25584	1006.49713	-0.78791	-0.00039731	4.0271	0.0020307	3.2392	0.0016334	504.25710006855616	48.856	0.17831	48.923	48.764	48.943	0.066795					6	4	2	0	0	0	0.027866	1	4936	4936		30.504	0	1	81161	+		12982	25864	9059	9077	14377	14377					-0.005862425476038879
ENEIFKVE	8	Unmodified	_ENEIFKVE_					0	0	0			REV__nc|ENSG00000165259|Q7Z353-2|HDX	REV__nc|ENSG00000165259|Q7Z353-2|HDX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	504.25584	1006.49713	-0.80173	-0.00040428	8.5567	0.0043148	7.755	0.0039105	504.7610815240091	48.945	0.18047	48.665	48.501	48.682	-0.27977	-0.12868	0.0022871	NaN	49.442	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46219	+		12983	25864	9059	9077							-0.005862425476038879
ENEISPPVLVE	11	Unmodified	_ENEISPPVLVE_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.58258056640625	3	409.215204	1224.62378	0.57225	0.00023417	4.2808	0.0017518	4.853	0.0019859	409.2168850036661	35.077	0.85953	35.121	34.675	35.535	0.04406					35	22	2	0	0	0	0.024768	1	2612	2612		14.243	6.4387	1	69718	+		12984	24611;36769	9060	9078	14378	14378					0.020456388868296926
ENEKDVYI	8	Unmodified	_ENEKDVYI_					0	0	0			REV__nc|ENSG00000213005|Q9NZH4|PTTG3P	REV__nc|ENSG00000213005|Q9NZH4|PTTG3P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.29754638671875	2	505.245472	1008.47639	-0.85546	-0.00043222	-1.9646	-0.00099262	-2.8201	-0.0014248	505.24457002690826	37.161	0.42738	36.942	36.686	37.114	-0.2195					15	10	2	0	0	0	0.027866	1	2934	2934		37.159	28.337	1	165830	+		12985	37124	9061	9079	14379	14379					-0.02750832927290503
ENEKHFFPT	9	Unmodified	_ENEKHFFPT_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.310791015625	2	574.772188	1147.52982	-1.5272	-0.00087777	0.88274	0.00050737	-0.64442	-0.0003704	574.7724099130556	60.768	0.38184	60.841	60.605	60.987	0.073421					14	9	2	0	0	0	0.0242	1	6916	6916		51.193	0	1	83782	+		12986	27110	9062	9080	14380	14380					-0.03804035424786889
ENEKILDI	8	Unmodified	_ENEKILDI_					0	0	0		nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;ENSG00000130254|ENST00000252542|SAFB2	nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7908020019531	2	487.263665	972.512776	-0.4682	-0.00022814	0.87541	0.00042655	0.40721	0.00019842	487.26420011669376	78.974	0.9115	78.993	78.483	79.394	0.018677					34	21	3	0	0	0	0.027866	1	9677	9677		56.721	0	1	233340			12987	4403	9063	9081	14381	14381					0.025420439694244124
ENEKNESKK	9	Unmodified	_ENEKNESKK_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8038940429688	2	553.277835	1104.54112	0.078941	4.3676E-05	-3.3879	-0.0018745	-3.309	-0.0018308	553.2752827955807	25.425	0.20439	25.505	25.418	25.622	0.08009					7	4	2	0	0	0	0.024427	1	1157	1157		42.396	0	1	35189	+		12988	24332	9064	9082	14382	14382					-0.0069725812129490805
ENELDSVKR	9	Unmodified	_ENELDSVKR_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.2903442382812	2	545.280377	1088.5462	-0.62574	-0.0003412	0.25627	0.00013974	-0.36947	-0.00020146	545.2807478733437	54.122	0.33947	53.975	53.855	54.194	-0.14723					13	9	2	0	0	0	0.02435	1	5859	5859		42.396	10.762	1	156440	+		12989	23588	9065	9083	14383	14383					0.005470457413366603
ENELECHRG	9	Unmodified	_ENELECHRG_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.2903442382812	2	543.73528	1085.45601	-0.55958	-0.00030426	3.2333	0.0017581	2.6737	0.0014538	544.2394228889674	54.144	0.16634	53.996	53.921	54.088	-0.14723					7	4	2	0	0	0	0.024263	1	5859	5859		34.173	0	1	69989			12990	3925	9066	9084	14384	14384					-0.08330326858754233
ENELLHLK	8	Unmodified	_ENELLHLK_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.79571533203125	2	498.279649	994.544745	0.82433	0.00041075	-0.80016	-0.0003987	0.024171	1.2044E-05	498.2791108461819	58.853	0.55347	58.666	58.348	58.902	-0.18705					33	14	3	0	0	0	0.027866	1	6625	6625		79.451	0	1	2342500			12991	6486	9067	9085	14385	14385					0.04725456443247822
ENEMETFGATF	11	Unmodified	_ENEMETFGATF_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.181884765625	3	425.844783	1274.51252	-0.14572	-6.2056E-05	1.8628	0.00079328	1.7171	0.00073122	426.18023341429347	35.079	0.26432	34.892	34.721	34.985	-0.18675					9	6	2	0	0	0	0.024734	1	2605	2605		16.53	0	1	81500			12992	18207	9068	9086	14386	14386					-0.11375743812732253
ENEPIITMV	9	Unmodified	_ENEPIITMV_					0	0	0		nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3084716796875	2	523.26535	1044.51615	-1.226	-0.00064152	4.0486	0.0021185	2.8226	0.001477	523.2673833501525	32.809	0.5246	32.809	32.531	33.056	0					21	13	2	0	0	0	0.024427	1	2271	2271		34.173	0	1	227920			12993	1151	9069	9087	14387	14387					-0.004330292482109144
ENEPIITMV	9	Unmodified	_ENEPIITMV_					0	0	0		nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.26535	1044.51615	-0.77752	-0.00040685	3.7506	0.0019626	2.9731	0.0015557	523.2671725484216	32.636	0.6343	32.648	32.488	33.123	0.011799	-0.016864	-5.025E-05	NaN	19.997	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221420			12994	1151	9069	9087							-0.004330292482109144
ENEPLPPEI	9	Unmodified	_ENEPLPPEI_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-5|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2608642578125	2	519.261122	1036.50769	-0.47532	-0.00024682	-0.16129	-8.3754E-05	-0.63661	-0.00033057	519.2609844026547	39.646	1.0553	39.482	38.864	39.919	-0.16329					49	27	3	0	0	0	0.32811	1	3386	3386		71.877	13.096	1	1306300			12995	6450	9070	9088	14388	14388					-0.00910259893203147
ENEPLPPEI	9	Unmodified	_ENEPLPPEI_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-5|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2607421875	2	519.261122	1036.50769	-0.002562	-1.3303E-06	-0.41899	-0.00021757	-0.42155	-0.0002189	519.2608033589122	39.728	1.1412	39.497	38.979	40.12	-0.23021					42	29	2	0	0	0	0.6238	1	3378	3378		51.193	6.8155	1	1236600			12996	6450	9070	9088	14389	14389					-0.00910259893203147
ENEPLPPEI	9	Unmodified	_ENEPLPPEI_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-5|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	519.261122	1036.50769	-0.14748	-7.6579E-05	-0.36019	-0.00018703	-0.50767	-0.00026361	519.2608873899943	39.773	1.0411	39.55	38.926	39.967	-0.22311	0.039825	-3.4802E-05	NaN	71.877	45	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1211200			12997	6450	9070	9088							-0.00910259893203147
ENEQPVHLL	9	Unmodified	_ENEQPVHLL_					0	0	0		nc|ENSG00000167604|Q8NI38-3|NFKBID;nc|ENSG00000167604|Q8NI38|NFKBID;ENSG00000167604|ENST00000606253|NFKBID	nc|ENSG00000167604|Q8NI38-3|NFKBID	nc|ENSG00000167604|Q8NI38-3|NFKBID	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7645874023438	2	539.780013	1077.54547	-1.3902	-0.00075039	4.3174	0.0023305	2.9273	0.0015801	539.780730013584	49.685	0.72636	49.76	49.352	50.079	0.074196					42	19	4	0	0	0	0.024323	1	5090	5090		20.947	4.4738	1	696130			12998	7706	9071	9089	14390	14390					0.009802510922781948
ENERIIAR	8	Unmodified	_ENERIIAR_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3;REV__ENSG00000111642|ENST00000544040|CHD4	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2936706542969	2	500.780348	999.546142	-0.22433	-0.00011234	-3.627	-0.0018163	-3.8513	-0.0019287	500.77842695450744	78.215	0.51173	77.957	77.74	78.251	-0.25755					18	11	2	0	0	0	0.027866	1	9298	9298		87.754	13.238	1	149890	+		12999	26426;21930	9072	9090	14391	14391					0.046350905319854974
ENEVWKNI	8	Unmodified	_ENEVWKNI_					0	0	0			REV__nc|ENSG00000166396|O75635-2|SERPINB7	REV__nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.795166015625	2	516.261456	1030.50836	-1.0084	-0.0005206	1.7923	0.00092532	0.78394	0.00040472	516.2620734167086	65.016	0.44376	65.053	64.743	65.187	0.037376					19	11	3	0	0	0	0.027866	1	7557	7557		56.721	5.5284	1	144610	+		13000	26010	9073	9091	14392	14392					-0.005674204534898308
ENEYKTRFDD	10	Unmodified	_ENEYKTRFDD_					0	0	0			REV__CON__Q9Z2K1	REV__CON__Q9Z2K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7530517578125	3	439.529963	1315.56806	1.853	0.00081444	-3.6332	-0.0015969	-1.7803	-0.00078248	439.52803835344724	23.161	0.49836	22.97	22.711	23.209	-0.19117					19	10	3	0	0	0	0.03519	1	892	892		58.246	11.789	1	249370	+	+	13001	19590	9074	9092	14393	14393					-0.07710194300739204
ENFFFEKET	9	Unmodified	_ENFFFEKET_					0	0	0			REV__nc|ENSG00000171385|Q9UK17-2|KCND3	REV__nc|ENSG00000171385|Q9UK17-2|KCND3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.3145141601562	2	595.771854	1189.52915	-0.56412	-0.00033608	-2.3116	-0.0013772	-2.8757	-0.0017133	595.7704415332862	69.428	0.41231	69.206	69.02	69.432	-0.22245					14	9	2	0	0	0	0.024405	1	8047	8047		35.618	7.736	1	142070	+		13002	36930	9075	9093	14394	14394					-0.05802874864480145
ENFFFFII	8	Unmodified	_ENFFFFII_					0	0	0			REV__ENST00000438189.6_1_11:67226476-67226593:+|nuORF	REV__ENST00000438189.6_1_11:67226476-67226593:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.308837890625	2	538.776211	1075.53787	-1.5177	-0.00081768	-4.4314	-0.0023875	-5.949	-0.0032052	538.7731444789367	64.865	0.77978	64.865	64.311	65.091	0					30	20	3	0	0	0	0.027866	1	7580	7580		33.516	0	1	213510	+		13003	32489	9076	9094	14395	14395					0.003121435626553648
ENFFGYII	8	Unmodified	_ENFFGYII_					0	0	0			REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2880554199219	2	501.750193	1001.48583	-0.13306	-6.676E-05	-2.0388	-0.0010229	-2.1718	-0.0010897	501.7490393153519	43.932	0.39943	43.968	43.743	44.142	0.0369					16	10	2	0	0	0	0.027866	1	4111	4111		18.324	8.6188	1	285770	+		13004	20213	9077	9095	14396	14396					-0.01485019851099878
ENFIVIPL	8	Unmodified	_ENFIVIPL_					0	0	0			REV__ENSG00000170075|ENST00000367282|GPR37L1	REV__ENSG00000170075|ENST00000367282|GPR37L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2663269042969	2	472.776211	943.537869	0.99888	0.00047225	2.5927	0.0012258	3.5916	0.001698	472.777519747455	77.034	0.79204	77.034	76.799	77.591	0					26	18	2	0	0	0	0.027866	1	9538	9538		25.45	6.0902	1	922900	+		13005	26432	9078	9096	14397	14397					0.06384143562661393
ENFIYNVK	8	Unmodified	_ENFIYNVK_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.2989501953125	2	513.766374	1025.5182	-0.46542	-0.00023912	0.43423	0.0002231	-0.031184	-1.6021E-05	514.266138219495	52.403	0.23942	52.495	52.363	52.602	0.091938					8	5	2	0	0	0	0.027866	1	5545	5545		31.955	0	1	32501	+		13006	21246	9079	9097	14398	14398					0.0064576755189591495
ENFLCDLMDTA	11	Unmodified	_ENFLCDLMDTA_					0	0	0		nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5180358886719	3	424.514268	1270.52097	0.19129	8.1205E-05	4.4764	0.0019003	4.6677	0.0019815	424.85045769011884	30.802	0.33517	30.65	30.511	30.846	-0.15231					12	7	2	0	0	0	0.024746	1	1992	1992		33.039	2.4705	1	54832			13007	18588	9080	9098	14399	14399					-0.10346513167746707
ENFLGKKG	8	Unmodified	_ENFLGKKG_					0	0	0		ENSG00000196431|ENST00000354760|CRYBA4	ENSG00000196431|ENST00000354760|CRYBA4	ENSG00000196431|ENST00000354760|CRYBA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.7376403808594	2	446.747985	891.481417	-0.01909	-8.5286E-06	-0.36335	-0.00016232	-0.38244	-0.00017085	446.7478792108142	41.732	0.3272	41.755	41.597	41.925	0.023006					12	8	2	0	0	0	0.027866	1	3696	3696		29.15	7.1897	1	62634			13008	9874	9081	9099	14400	14400					0.03133515726017322
ENFRESFNGI	10	Unmodified	_ENFRESFNGI_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5113220214844	3	404.859643	1211.5571	-0.60611	-0.00024539	-2.2982	-0.00093047	-2.9044	-0.0011759	404.8584181384246	31.915	0.52509	31.757	31.336	31.861	-0.15772					17	12	2	0	0	0	0.03519	1	2157	2157		54.722	30.446	1	111990			13009	948	9082	9100	14401	14401					-0.04021551884375185
ENFRGNYLL	9	Unmodified	_ENFRGNYLL_					0	0	0			REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2667236328125	2	563.288005	1124.56146	-0.31623	-0.00017813	3.7854	0.0021323	3.4691	0.0019541	563.2900849362757	73.168	0.46386	72.891	72.669	73.133	-0.2769					17	10	2	0	0	0	0.024374	1	8589	8589		40.778	21.675	1	193470	+		13010	20542;19288	9083	9101	14402	14402					0.004159573291872221
ENFRGNYLL	9	Unmodified	_ENFRGNYLL_					0	0	0			REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2658081054688	2	563.288005	1124.56146	-0.56022	-0.00031557	4.1331	0.0023281	3.5729	0.0020126	563.2899622388176	72.984	0.61847	72.786	72.497	73.115	-0.1981					20	14	2	0	0	0	0.024323	1	8577	8577		44.117	6.9577	1	212450	+		13011	20542;19288	9083	9101	14403	14403					0.004159573291872221
ENFRHSLPE	9	Unmodified	_ENFRHSLPE_					0	0	0			REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2664184570312	2	564.775262	1127.53597	-0.0063341	-3.5773E-06	-0.18839	-0.0001064	-0.19472	-0.00010997	565.2765507262628	72.848	0.756	72.584	72.343	73.099	-0.26479					29	17	3	0	0	0	0.024438	1	8604	8604		36.447	0	1	163390	+		13012	37032	9084	9102	14404	14404					-0.022695171932582525
ENFRRLFL	8	Unmodified	_ENFRRLFL_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.8241577148438	2	547.808908	1093.60326	-0.43903	-0.0002405	-0.37119	-0.00020334	-0.81022	-0.00044385	547.8085757787271	41.831	0.40784	41.601	41.354	41.761	-0.2303					21	10	3	0	0	0	0.027866	1	3672	3672		37.159	7.9891	1	197520	+		13013	20907	9085	9103	14405	14405					0.06020557808369631
ENFSHRSNL	9	Unmodified	_ENFSHRSNL_					0	0	0		ENSG00000006194|ENST00000219069|ZNF263	ENSG00000006194|ENST00000219069|ZNF263	ENSG00000006194|ENST00000219069|ZNF263	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7979736328125	2	552.265062	1102.51557	-0.36782	-0.00020313	-3.0412	-0.0016795	-3.409	-0.0018827	552.2633051264787	58.101	0.7635	58.192	57.835	58.598	0.091217					33	20	2	0	0	0	0.024313	1	6443	6443		42.864	0	1	196550			13014	786	9086	9104	14406	14406					-0.031586878530333706
ENFSICYFFPL	11	Unmodified	_ENFSICYFFPL_					0	0	0		ENST00000327827.11_1_16:9212813-9213104:+|nuORF	ENST00000327827.11_1_16:9212813-9213104:+|nuORF	ENST00000327827.11_1_16:9212813-9213104:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.26043701171875	3	460.54953	1378.62676	-0.59585	-0.00027442	-2.8539	-0.0013144	-3.4497	-0.0015888	460.54822459390215	37.564	0.31715	37.501	37.305	37.622	-0.063389					11	8	2	0	0	0	0.024727	1	3052	3052		29.551	10.584	1	54626			13015	12296	9087	9105	14407	14407					-0.04740809259965317
ENFYRGIT	8	Unmodified	_ENFYRGIT_					0	0	0			REV__nc|ENSG00000071794|Q14527-2|HLTF	REV__nc|ENSG00000071794|Q14527-2|HLTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2893371582031	2	500.248349	998.482145	0.55477	0.00027752	-1.1867	-0.00059365	-0.63193	-0.00031612	500.2476785707484	49.375	0.82956	49.375	48.864	49.694	0					35	22	3	0	0	0	0.027866	1	5085	5085		51.335	12.529	1	219110	+		13016	20453	9088	9106	14408	14408					-0.017156896249616693
ENFYRGIT	8	Unmodified	_ENFYRGIT_					0	0	0			REV__nc|ENSG00000071794|Q14527-2|HLTF	REV__nc|ENSG00000071794|Q14527-2|HLTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2883605957031	2	500.248349	998.482145	-1.3527	-0.00067668	1.9148	0.0009579	0.56217	0.00028122	500.24926226433524	49.245	0.62872	49.319	48.987	49.615	0.074192					25	16	2	0	0	0	0.027866	1	4979	4979		20.947	0	1	137380	+		13017	20453	9088	9106	14409	14409					-0.017156896249616693
ENFYSEMVAL	10	Unmodified	_ENFYSEMVAL_					0	0	0			REV__nc|ENSG00000147421|Q6NT76-2|HMBOX1	REV__nc|ENSG00000147421|Q6NT76-2|HMBOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	602.759521484375	2	601.773539	1201.53253	-0.41052	-0.00024704	3.931	0.0023656	3.5205	0.0021185	601.7754849313351	57.804	0.41904	57.614	57.37	57.789	-0.19018					28	10	4	0	0	0	0.03519	1	6330	6330		32.812	0	1	626310	+		13018	24553	9089	9107	14410	14410					-0.060179480821034304
ENGFRVYNA	9	Unmodified	_ENGFRVYNA_					0	0	0		ENST00000583470.1_1_17:30439414-30439573:-|nuORF	ENST00000583470.1_1_17:30439414-30439573:-|nuORF	ENST00000583470.1_1_17:30439414-30439573:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.815673828125	2	535.256705	1068.49886	-0.17479	-9.3556E-05	1.836	0.00098272	1.6612	0.00088916	535.2579834605749	71.662	0.39446	71.456	71.305	71.699	-0.20613					16	9	2	0	0	0	0.024427	1	8350	8350		42.396	15.6	1	102350			13019	17196	9090	9108	14411	14411					-0.032651887390102274
ENGKLITF	8	Unmodified	_ENGKLITF_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.73211669921875	2	461.255643	920.496732	0.94529	0.00043602	4.0144	0.0018517	4.9597	0.0022877	461.2566703994487	25.119	0.71793	24.947	24.688	25.406	-0.17151					31	16	3	0	0	0	0.027866	1	1146	1146		60.972	16.441	1	180050	+		13020	23479	9091	9109	14412	14412					0.03330382523188291
ENGKQIKSI	9	Unmodified	_ENGKQIKSI_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8;ENST00000559700.5_1_15:78584919-78588040:-|nuORF	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.32330322265625	2	508.790381	1015.56621	0.27751	0.00014119	1.7556	0.00089324	2.0331	0.0010344	508.790258768075	78.747	0.41547	78.554	78.176	78.591	-0.1921					13	9	2	0	0	0	0.024253	1	9701	9701		70.816	7.2824	1	49367			13021	5407	9092	9110	14413	14413					0.059048414719427456
ENGKWGRLW	9	Unmodified	_ENGKWGRLW_					0	0	0			REV__ENSG00000111639|ENST00000229238|MRPL51	REV__ENSG00000111639|ENST00000229238|MRPL51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.3192138671875	2	573.296165	1144.57778	0.16424	9.4156E-05	-0.60307	-0.00034574	-0.43883	-0.00025158	573.7977262630158	79.174	0.62119	78.955	78.748	79.369	-0.21923					21	14	2	0	0	0	0.024539	1	9515	9515		14.865	3.9993	1	74370	+		13022	21928	9093	9111	14414	14414					0.011270832859509028
ENGKWGRLW	9	Unmodified	_ENGKWGRLW_					0	0	0			REV__ENSG00000111639|ENST00000229238|MRPL51	REV__ENSG00000111639|ENST00000229238|MRPL51	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	573.296165	1144.57778	-1.0658	-0.00061099	1.2372	0.00070928	0.17145	9.8293E-05	573.2957496648193	78.751	0.16695	78.751	78.658	78.825	0	-0.19235	0.0020111	NaN	26.693	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71538	+		13023	21928	9093	9111							0.011270832859509028
ENGLEQASL	9	Unmodified	_ENGLEQASL_					0	0	0			REV__ENSG00000019995|ENST00000359653|ZRANB1	REV__ENSG00000019995|ENST00000359653|ZRANB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2872314453125	2	480.735271	959.45599	0.59127	0.00028424	-2.6718	-0.0012845	-2.0806	-0.0010002	480.7338705288717	49.665	0.67353	49.56	49.259	49.933	-0.10558					26	17	2	0	0	0	0.023842	1	5000	5000		49.536	8.7579	1	77240	+		13024	19989	9094	9112	14415	14415					-0.025360035871017317
ENGLEQASL	9	Unmodified	_ENGLEQASL_					0	0	0			REV__ENSG00000019995|ENST00000359653|ZRANB1	REV__ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.735271	959.45599	0.13422	6.4524E-05	-5.8084	-0.0027923	-5.6741	-0.0027278	480.73197956270997	49.665	1.206	49.514	49.182	50.388	-0.1512	-0.022926	-0.0014352	NaN	49.536	50	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173760	+		13025	19989	9094	9112							-0.025360035871017317
ENGLINVSE	9	Unmodified	_ENGLINVSE_					0	0	0			REV__ENST00000503754.5_1_4:40194655-40198863:+|nuORF	REV__ENST00000503754.5_1_4:40194655-40198863:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.74542236328125	2	487.743096	973.47164	3.4191	0.0016676	1.4505	0.00070745	4.8695	0.0023751	487.7436314612838	16.785	0.46429	16.785	16.638	17.102	0					25	13	3	0	0	0	0.96322	1	89	89		27.882	2.4321	1	105120	+		13026	33965	9095	9113	14416	14416					-0.016157170700353163
ENGNRVLQN	9	Unmodified	_ENGNRVLQN_					0	0	0			REV__nc|ENSG00000128928|P26440-2|IVD	REV__nc|ENSG00000128928|P26440-2|IVD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3065795898438	2	522.265062	1042.51557	-0.87378	-0.00045634	2.0299	0.0010601	1.1561	0.00060378	522.2655760612653	53.28	1.1424	53.133	52.569	53.711	-0.14723					40	30	2	0	0	0	0.024397	1	5703	5703		31.53	0	1	1030600	+		13027	23021	9096	9114	14417	14417					-0.003986878530440663
ENGQEIKN	8	Unmodified	_ENGQEIKN_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1;ENST00000437348.5_1_11:31115730-31149186:-|nuORF;ENST00000342355.8_1_11:30965860-31263019:-|nuORF	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.7605895996094	2	466.227613	930.440674	0.057692	2.6897E-05	-0.6335	-0.00029536	-0.57581	-0.00026846	466.22867772677466	86.444	0.26326	86.307	86.093	86.356	-0.13734					7	5	2	0	0	0	0.027866	1	10477	10477		55.504	11.387	1	13763			13028	8100	9097	9115	14418	14418					-0.027328703842840696
ENGQVTYTIL	10	Unmodified	_ENGQVTYTIL_					0	0	0		nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.3029174804688	2	569.292953	1136.57135	-2.0139	-0.0011465	1.6084	0.00091564	-0.4055	-0.00023085	569.2936448058907	49.101	0.40233	49.175	48.95	49.352	0.074196					24	10	3	0	0	0	0.03519	1	5005	5005		19.997	0	1	475850			13029	9796	9098	9116	14419	14419					0.008531005439181172
ENGSVSPPPF	10	Unmodified	_ENGSVSPPPF_					0	0	0		ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2919311523438	2	515.745639	1029.47673	-0.012868	-6.6365E-06	-0.96792	-0.0004992	-0.98079	-0.00050584	515.7449947467043	39.993	0.1827	39.993	39.879	40.062	0					6	4	2	0	0	0	0.03519	1	3495	3495		34.173	1.3601	1	56461			13030	2599	9099	9117	14420	14420					-0.03683413207409103
ENGTANPIKN	10	Unmodified	_ENGTANPIKN_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.814697265625	2	529.26727	1056.51999	-0.65209	-0.00034513	-3.3761	-0.0017869	-4.0282	-0.002132	529.7662377796971	26.648	0.42741	26.729	26.414	26.841	0.081291					17	9	3	0	0	0	0.03519	1	1325	1325		32.751	25.06	1	42043			13031	5277	9100	9118	14421	14421					-0.006012234301579156
ENGTANPIKN	10	Unmodified	_ENGTANPIKN_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.26727	1056.51999	-0.41223	-0.00021818	2.3616	0.0012499	1.9494	0.0010317	529.2691178819136	27.125	0.25931	26.969	26.802	27.061	-0.15664	0.088749	0.0034157	NaN	85.862	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46248			13032	5277	9100	9118							-0.006012234301579156
ENGVKVRPF	9	Unmodified	_ENGVKVRPF_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.307861328125	2	523.293091	1044.57163	-0.58668	-0.00030701	4.1146	0.0021531	3.5279	0.0018461	523.2950318149976	30.573	1.2796	30.647	30.212	31.492	0.074314					53	30	2	0	0	0	0.024477	1	1970	1970		35.618	12.576	1	418470	+		13033	21776	9101	9119	14422	14422					0.05112565054423612
ENGVYLIDV	9	Unmodified	_ENGVYLIDV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7692565917969	2	511.263665	1020.51278	0.085395	4.3659E-05	0.049648	2.5383E-05	0.13504	6.9043E-05	511.2637746867124	87.032	1.193	87.032	86.171	87.364	0					37	27	2	0	0	0	0.023473	1	10833	10833		85.161	0	1	163840			13034	9935;15443	9102	9120	14423	14423					0.003340439694397901
ENHDGMSREND	11	Unmodified	_ENHDGMSREND_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.74310302734375	3	435.17044	1302.48949	-0.30725	-0.00013371	3.8652	0.001682	3.558	0.0015483	435.1718987070642	33.297	0.32506	33.297	33.096	33.421	0					11	8	2	0	0	0	0.024779	1	2403	2403		21.78	12.981	1	65309	+		13035	21973	9103	9121	14424	14424					-0.14965369877472767
ENHDGMSREND	11	Unmodified	_ENHDGMSREND_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.74322509765625	3	435.17044	1302.48949	-0.54364	-0.00023658	4.3249	0.0018821	3.7812	0.0016455	435.50668451688637	33.186	0.46733	33.192	32.888	33.355	0.0066261					20	12	2	0	0	0	0.024757	1	2367	2367		15.337	0	1	50087	+		13036	21973	9103	9121	14425	14425					-0.14965369877472767
ENHDTFLLA	9	Unmodified	_ENHDTFLLA_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.3007202148438	2	530.258914	1058.50327	-0.86123	-0.00045668	1.6554	0.0008778	0.79419	0.00042113	530.2595010828452	30.289	0.41776	30.297	30.164	30.581	0.0086708					14	9	2	0	0	0	0.02435	1	1904	1904		34.173	0	1	102240			13037	6088	9104	9122	14426	14426					-0.023637243160919752
ENHIEEDSI	9	Unmodified	_ENHIEEDSI_					0	0	0			REV__MAP1A|p.D757N|1|0.36|ENSG00000166963|chr15:43523742-43523742|G/A|missense_variant	REV__MAP1A|p.D757N|1|0.36|ENSG00000166963|chr15:43523742-43523742|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3189697265625	2	543.240918	1084.46728	-0.69384	-0.00037692	2.4208	0.0013151	1.7269	0.00093813	543.2419541418137	59.868	0.66529	59.668	59.427	60.093	-0.20016					38	17	3	0	0	0	0.024511	1	6808	6808		13.454	0	1	434880	+		13038	36348	9105	9123	14427	14427					-0.07157226283607088
ENHKSNNKENI	11	Unmodified	_ENHKSNNKENI_					0	0	0		ENSG00000171202|ENST00000304511|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.25897216796875	3	442.88474	1325.63239	-0.30045	-0.00013306	1.2141	0.00053771	0.91366	0.00040464	442.8851588011576	23.306	0.84878	23.245	22.709	23.557	-0.060862					38	19	3	0	0	0	0.024765	1	928	928		15.921	0	1	227440			13039	8126	9106	9124	14428	14428					-0.017399944239514298
ENHLLAIVN	9	Unmodified	_ENHLLAIVN_					0	0	0		ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7337646484375	2	511.785099	1021.55564	0.49385	0.00025274	-2.4159	-0.0012364	-1.9221	-0.0009837	512.2847666005971	59.433	0.49086	59.236	58.969	59.46	-0.19737					23	11	3	0	0	0	0.024427	1	6535	6535		26.693	11.828	1	936560			13040	6603	9107	9125	14429	14429					0.04572858817505221
ENHLRILY	8	Unmodified	_ENHLRILY_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2766723632812	2	529.293091	1056.57163	-0.53294	-0.00028208	3.8559	0.0020409	3.3229	0.0017588	529.2949470211637	58.891	0.42973	58.703	58.509	58.938	-0.18795					17	10	2	0	0	0	0.027866	1	6491	6491		34.173	0	1	142820	+		13041	26810	9108	9126	14430	14430					0.04560565054453036
ENHMSRWAAH	10	Unmodified	_ENHMSRWAAH_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant;ENST00000479391.6_3_9:98729892-98767017:+|nuORF	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.52203369140625	3	413.520968	1237.54107	0.39424	0.00016303	1.5723	0.00065016	1.9665	0.00081319	413.5215274238157	36.781	0.76663	36.717	36.432	37.198	-0.063389					47	19	3	0	0	0	0.94923	1	2938	2938		50.791	4.8393	1	1770200			13042	9104	9109	9127	14431	14431					-0.06819536602256449
ENHQVVLSKV	10	Unmodified	_ENHQVVLSKV_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.306884765625	2	576.822212	1151.62987	-0.51085	-0.00029467	4.1111	0.0023714	3.6003	0.0020767	576.8243844899828	72.929	0.63016	72.664	72.428	73.058	-0.26479					33	14	3	0	0	0	0.03519	1	8594	8594		21.686	0.8486	1	813260	+		13043	28792	9110	9128	14432	14432					0.060122019090158574
ENHQYQQD	8	Unmodified	_ENHQYQQD_					0	0	0		nc|ENSG00000186567|Q7Z692|CEACAM19	nc|ENSG00000186567|Q7Z692|CEACAM19	nc|ENSG00000186567|Q7Z692|CEACAM19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.78564453125	2	531.217777	1060.421	-0.90606	-0.00048132	-0.34468	-0.0001831	-1.2507	-0.00066442	531.7189278778509	53.139	0.29465	53.139	52.901	53.196	0					12	7	2	0	0	0	0.027866	1	5715	5715		47.657	0	1	73944			13044	18598	9111	9129	14433	14433					-0.10679246395056907
ENHRDLVS	8	Unmodified	_ENHRDLVS_					0	0	0		ENSG00000167384|ENST00000592529|ZNF180;nc|ENSG00000167384|Q9UJW8-3|ZNF180;nc|ENSG00000167384|Q9UJW8-4|ZNF180;nc|ENSG00000167384|Q9UJW8|ZNF180	ENSG00000167384|ENST00000592529|ZNF180	ENSG00000167384|ENST00000592529|ZNF180	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.26519775390625	2	485.241055	968.467557	0.29513	0.00014321	-4.3546	-0.002113	-4.0595	-0.0019698	485.2387765483768	57.385	0.66843	57.211	56.866	57.534	-0.1749					57	17	5	0	0	0	0.027866	1	6399	6399		37.159	0	1	1809800			13045	7682	9112	9130	14434	14434					-0.017937617730922284
ENHSKFFFTK	10	Unmodified	_ENHSKFFFTK_					0	0	0			REV__ENST00000382466.7_2_13:21946734-21946827:-|nuORF	REV__ENST00000382466.7_2_13:21946734-21946827:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.8705139160156	3	428.8839	1283.62987	0.034793	1.4922E-05	-3.9705	-0.0017029	-3.9357	-0.001688	429.2159352094911	36.792	0.31946	36.576	36.45	36.769	-0.21661					16	7	3	0	0	0	0.03519	1	2919	2919		17.167	0	1	87502	+		13046	31544	9113	9131	14435	14435					-0.0005979809097880207
ENHTCFRDV	9	Unmodified	_ENHTCFRDV_					0	0	0			REV__ZNF57|p.T374Nfs*3|1|0.38|ENSG00000171970|chr19:2917739-2917749|TCACTTGGTCC/-|frameshift_variant	REV__ZNF57|p.T374Nfs*3|1|0.38|ENSG00000171970|chr19:2917739-2917749|TCACTTGGTCC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8197021484375	2	560.745647	1119.47674	-0.40618	-0.00022776	-3.4608	-0.0019406	-3.8669	-0.0021684	560.7435742670575	60.348	0.32996	60.348	60.143	60.473	0					10	8	2	0	0	0	0.024456	1	6946	6946		35.152	0	1	101190	+		13047	26622	9114	9132	14436	14436					-0.07821736479081665
ENIAEGLRALL	11	Unmodified	_ENIAEGLRALL_					0	0	0		sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.8428344726562	2	599.843145	1197.67174	-1.5509	-0.0009303	1.5457	0.0009272	-0.0051681	-3.1E-06	599.8439451094943	64.746	0.64194	64.484	64.193	64.835	-0.2626					42	16	3	0	0	0	0.35269	1	7599	7599		68.626	0	1	1205600			13048	37931	9115	9133	14437	14437					0.08080757597576849
ENIAKQNL	8	Unmodified	_ENIAKQNL_					0	0	0		ENST00000560518.1_1_15:52473176-52497369:+|nuORF	ENST00000560518.1_1_15:52473176-52497369:+|nuORF	ENST00000560518.1_1_15:52473176-52497369:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2872619628906	2	465.256174	928.497795	-0.2056	-9.5659E-05	-1.0532	-0.00048999	-1.2588	-0.00058565	465.25606772206885	75.618	0.39445	75.359	75.24	75.634	-0.25865					21	9	3	0	0	0	0.027866	1	8957	8957		29.15	6.1071	1	415310			13049	16805	9116	9134	14438	14438					0.03068596892092046
ENIDIDAFD	9	Unmodified	_ENIDIDAFD_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7960205078125	2	526.232561	1050.45057	-0.30891	-0.00016256	4.1643	0.0021914	3.8554	0.0020288	526.2344474387357	52.147	0.29362	52	51.915	52.209	-0.14735					11	7	2	0	0	0	0.024477	1	5572	5572		35.618	12.096	1	52067			13050	8474	9117	9135	14439	14439					-0.07263727169583944
ENIDSYCVL	9	Unmodified	_ENIDSYCVL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.23974609375	2	528.239332	1054.46411	-0.92442	-0.00048831	0.67953	0.00035895	-0.24489	-0.00012936	528.2396179045186	63.178	2.4231	63.178	62.769	65.192	0					170	65	5	0	0	0	0.39228	2	7410	7410;7425		66.429	4.3219	1	25671000			13051	1119	9118	9136	14440;14441	14440					-0.060941926619761944
ENIENTRRGE	10	Unmodified	_ENIENTRRGE_					0	0	0			REV__ENSG00000005302|ENST00000312196|MSL3	REV__ENSG00000005302|ENST00000312196|MSL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2109680175781	3	406.533819	1216.57963	0.22336	9.0805E-05	3.0999	0.0012602	3.3233	0.001351	406.5349869835407	26.933	0.92896	26.765	26.301	27.23	-0.16816					34	21	2	0	0	0	0.03519	1	1494	1494		29.551	0	1	45738	+		13052	19802	9119	9137	14442	14442					-0.019999524867444052
ENIFLHIVDL	10	Unmodified	_ENIFLHIVDL_					0	0	0		nc|ENSG00000102796|A0PJE2-2|DHRS12;ENSG00000102796|ENST00000444610|DHRS12;nc|ENSG00000102796|A0PJE2-3|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9000549316406	3	404.892284	1211.65502	-0.56251	-0.00022776	-1.6621	-0.00067296	-2.2246	-0.00090072	404.8913860319382	28.427	0.44752	28.182	28.001	28.448	-0.24524					15	10	2	0	0	0	0.03519	1	1688	1688		10.104	0	1	81652			13053	2430	9120	9138	14443	14443					0.057662567116494756
ENIFLHIVDL	10	Unmodified	_ENIFLHIVDL_					0	0	0		nc|ENSG00000102796|A0PJE2-2|DHRS12;ENSG00000102796|ENST00000444610|DHRS12;nc|ENSG00000102796|A0PJE2-3|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	nc|ENSG00000102796|A0PJE2-2|DHRS12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.892284	1211.65502	0.27737	0.0001123	-1.5488	-0.0006271	-1.2714	-0.0005148	404.891356466469	28.442	0.33913	28.442	28.191	28.53	0	0.13044	6.8369E-05	NaN	31.634	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22622			13054	2430	9120	9138							0.057662567116494756
ENIGYVLY	8	Unmodified	_ENIGYVLY_					0	0	0		nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6;nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;ENSG00000069018|ENST00000513104|TRPC7;TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant;nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000137672|Q9Y210-2|TRPC6;TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	nc|ENSG00000137672|Q9Y210-2|TRPC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.3103332519531	2	485.74765	969.480748	-0.41007	-0.00019919	0.51702	0.00025114	0.10696	5.1955E-05	485.74766159708355	75.076	0.39297	75.086	74.895	75.288	0.010376					15	9	2	0	0	0	0.027866	1	9116	9116		13.775	0	1	77628			13055	5144;5275	9121	9139	14444	14444					-0.005213237137013493
ENIGYVLY	8	Unmodified	_ENIGYVLY_					0	0	0		nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6;nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;ENSG00000069018|ENST00000513104|TRPC7;TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant;nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000137672|Q9Y210-2|TRPC6;TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	nc|ENSG00000137672|Q9Y210-2|TRPC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.74765	969.480748	0.4896	0.00023782	-0.96555	-0.00046902	-0.47596	-0.0002312	485.7470323813391	75.266	0.37304	75.091	74.9	75.273	-0.17548	0.0022655	-0.0010111	NaN	20.482	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54466			13056	5144;5275	9121	9139							-0.005213237137013493
ENIHDVLQL	9	Unmodified	_ENIHDVLQL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7880859375	2	540.787838	1079.56112	-0.85058	-0.00045998	0.52311	0.00028289	-0.32747	-0.00017709	540.7880211532611	46.611	1.0057	46.663	46.375	47.381	0.051395					70	27	4	0	0	0	0.46427	1	4572	4572		61.691	1.573	1	4702300			13057	8321	9122	9140	14445	14445					0.024525376093379236
ENIIIWHC	8	Unmodified	_ENIIIWHC_					0	0	0			REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8028564453125	2	514.25512	1026.49569	-0.015095	-7.7629E-06	-3.7272	-0.0019167	-3.7423	-0.0019245	514.2506729111277	59.839	0.60992	59.591	59.335	59.945	-0.24842					32	15	3	0	0	0	0.027866	1	6612	6612		25.45	3.4903	1	541610	+		13058	24821	9123	9141	14446	14446					-0.016501551173632834
ENIKCFFEGSH	11	Unmodified	_ENIKCFFEGSH_					0	0	0		nc|ENSG00000188820|Q5R3K3-2|CALHM6;ENSG00000188820|ENST00000368605|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.88134765625	3	437.53265	1309.57612	-0.37145	-0.00016252	-3.341	-0.0014618	-3.7125	-0.0016243	437.53107434346407	39.714	0.35751	39.491	39.302	39.66	-0.22311					15	8	3	0	0	0	0.024339	1	3357	3357		53.597	0	1	174790			13059	9756	9124	9142	14447	14447					-0.06628338584982885
ENILDSRLI	9	Unmodified	_ENILDSRLI_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2891235351562	2	536.803488	1071.59242	-0.76935	-0.00041299	2.9862	0.001603	2.2169	0.00119	536.8052549778757	82.092	0.49106	82.092	81.83	82.321	0					18	11	2	0	0	0	0.024389	1	10254	10254		51.193	3.5354	1	93364			13060	9268	9125	9143	14448	14448					0.059491106434506946
ENILESVL	8	Unmodified	_ENILESVL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.76397705078125	2	458.752933	915.491313	0.28018	0.00012854	-2.0861	-0.00095702	-1.806	-0.00082849	458.7518361362726	23.747	0.13202	23.545	23.48	23.612	-0.20193					4	2	2	0	0	0	0.027866	1	976	976		82.305	0	1	11997			13061	8590	9126	9144	14449	14449					0.030186589407207975
ENILGNSSIAE	11	Unmodified	_ENILGNSSIAE_					0	0	0		ENST00000393651.7_1_7:104758442-104766730:-|nuORF	ENST00000393651.7_1_7:104758442-104766730:-|nuORF	ENST00000393651.7_1_7:104758442-104766730:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.3037109375	2	573.785492	1145.55643	-0.47215	-0.00027091	-1.6306	-0.00093563	-2.1028	-0.0012065	573.7844669846211	58.421	0.72831	58.234	58.03	58.758	-0.18705					25	19	2	0	0	0	0.024797	1	6643	6643		46.457	7.6506	1	255680			13062	13457	9127	9145	14450	14450					-0.010523913240831462
ENILIKVVK	9	Unmodified	_ENILIKVVK_					0	0	0		ENST00000524019.5_1_14:102717905-102771389:-|nuORF	ENST00000524019.5_1_14:102717905-102771389:-|nuORF	ENST00000524019.5_1_14:102717905-102771389:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2747192382812	2	528.344792	1054.67503	-0.09445	-4.9902E-05	-0.77034	-0.00040701	-0.86479	-0.00045691	528.3441757035215	47.058	0.3159	46.905	46.736	47.052	-0.15301					11	7	2	0	0	0	0.024263	1	4675	4675		42.396	0	1	82194			13063	16053	9128	9146	14451	14451					0.14988052442231492
ENILIVIF	8	Unmodified	_ENILIVIF_					0	0	0		nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47	nc|ENSG00000196776|Q08722-2|CD47	nc|ENSG00000196776|Q08722-2|CD47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2671813964844	2	480.791861	959.569169	0.63784	0.00030667	-3.7418	-0.001799	-3.104	-0.0014924	480.78991717855286	23.696	0.43398	23.494	23.358	23.792	-0.20193					14	9	2	0	0	0	0.027866	1	992	992		33.516	0	1	47262			13064	9920	9129	9147	14452	14452					0.08776716596753431
ENILIVIF	8	Unmodified	_ENILIVIF_					0	0	0		nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47	nc|ENSG00000196776|Q08722-2|CD47	nc|ENSG00000196776|Q08722-2|CD47	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.791861	959.569169	-0.37612	-0.00018084	-2.4836	-0.0011941	-2.8597	-0.0013749	480.79021132934815	23.62	0.44987	23.44	23.157	23.607	-0.17989	-0.020527	0.0010584	NaN	18.324	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51240			13065	9920	9129	9147							0.08776716596753431
ENILIVIF	8	Unmodified	_ENILIVIF_					0	0	0		nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47	nc|ENSG00000196776|Q08722-2|CD47	nc|ENSG00000196776|Q08722-2|CD47	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.791861	959.569169	2.0516	0.00098641	-4.4255	-0.0021278	-2.3739	-0.0011413	480.78956232787436	23.639	0.29479	23.448	23.321	23.616	-0.19117	-0.012891	-0.00080887	NaN	18.324	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40695			13066	9920	9129	9147							0.08776716596753431
ENIMLLDKNI	10	Unmodified	_ENIMLLDKNI_					0	0	0		ENST00000558482.5_1_15:64221904-64332460:-|nuORF;ENSG00000035664|ENST00000457488|DAPK2;nc|ENSG00000035664|Q9UIK4-2|DAPK2;ENST00000559007.5_1_15:64204043-64263759:-|nuORF	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.9035949707031	3	401.553163	1201.63766	-0.46826	-0.00018803	-3.3044	-0.0013269	-3.7727	-0.0015149	401.5512655124559	30.846	0.66169	30.694	30.384	31.045	-0.15231					24	15	3	0	0	0	0.03519	1	1963	1963		66.962	26.904	1	45796			13067	1032	9130	9148	14453	14453					0.04490593114314834
ENINEASSLL	10	Unmodified	_ENINEASSLL_					0	0	0		ENST00000598554.1_1_19:42027644-42028339:-|nuORF	ENST00000598554.1_1_19:42027644-42028339:-|nuORF	ENST00000598554.1_1_19:42027644-42028339:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2750244140625	2	545.274761	1088.53497	-0.48422	-0.00026403	-0.41899	-0.00022847	-0.90322	-0.0004925	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	1.0074	1	9771	9771		45.022	4.4496	1	63206000			13068	17474	9131	9149	14454	14454					-0.005757763527981297
ENINTMILL	9	Unmodified	_ENINTMILL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3082885742188	2	530.788992	1059.56343	0.78895	0.00041877	-1.7391	-0.00092308	-0.95012	-0.00050431	530.7876410360456	59.468	0.68406	59.268	58.816	59.5	-0.20016					25	18	2	0	0	0	0.024313	1	6700	6700		51.193	1.7511	1	346660			13069	6240	9132	9150	14455	14455					0.03603250022774773
ENINYLCEL	9	Unmodified	_ENINYLCEL_					0	0	0		LRRC49|p.H198Y|1|0.25|ENSG00000137821|chr15:70919074-70919074|C/T|missense_variant	LRRC49|p.H198Y|1|0.25|ENSG00000137821|chr15:70919074-70919074|C/T|missense_variant	LRRC49|p.H198Y|1|0.25|ENSG00000137821|chr15:70919074-70919074|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2897338867188	2	555.760432	1109.50631	0.20947	0.00011642	1.5509	0.00086194	1.7604	0.00097836	555.7609309295395	67.463	0.35639	67.463	67.326	67.682	0					10	8	2	0	0	0	0.024288	1	8041	8041		62.107	1.9892	1	120640			13070	17928	9133	9151	14456	14456					-0.04406217253608702
ENIQDILAQNL	11	Unmodified	_ENIQDILAQNL_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.25836181640625	3	424.226103	1269.65648	-0.83525	-0.00035434	2.0617	0.00087463	1.2265	0.0005203	424.2267422280178	27.465	0.58228	27.465	27.144	27.726	0					24	15	3	0	0	0	0.024758	1	1473	1473		48.188	8.3148	1	66307			13071	6394	9134	9152	14457	14457					0.03243846009718254
ENIQDILAQNL	11	Unmodified	_ENIQDILAQNL_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	424.226103	1269.65648	-0.52883	-0.00022434	1.5629	0.00066303	1.0341	0.00043869	424.2265474422221	27.419	0.67882	27.406	27.241	27.92	-0.012983	-0.029535	-0.00032566	NaN	48.188	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67261			13072	6394	9134	9152							0.03243846009718254
ENIQWLLY	8	Unmodified	_ENIQWLLY_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2645263671875	2	539.782025	1077.5495	-1.3516	-0.00072958	1.1822	0.00063811	-0.16946	-9.1472E-05	540.2840377182806	21.219	0.44316	21.219	20.949	21.392	0					14	8	2	0	0	0	0.027866	1	607	607		33.516	8.0654	1	26911	+		13073	28047	9135	9153	14458	14458					0.013823405859966442
ENIRHVAF	8	Unmodified	_ENIRHVAF_					0	0	0		ENST00000234038.10_1_2:242122245-242122506:+|nuORF	ENST00000234038.10_1_2:242122245-242122506:+|nuORF	ENST00000234038.10_1_2:242122245-242122506:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7847900390625	2	493.264333	984.514114	-0.070598	-3.4824E-05	-3.7746	-0.0018619	-3.8452	-0.0018967	493.26473043882845	47.477	0.19575	47.477	47.395	47.591	0					6	5	2	0	0	0	0.027866	1	4772	4772		24.203	3.2558	1	69369			13074	11248	9136	9154	14459	14459					0.02123722848853049
ENIRKKDNGEF	11	Unmodified	_ENIRKKDNGEF_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-2|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7610778808594	3	450.565119	1348.67353	-0.20037	-9.028E-05	3.2212	0.0014514	3.0208	0.0013611	450.9004602000632	38.842	0.31992	38.842	38.721	39.041	0					11	8	2	0	0	0	0.024797	1	3319	3319		15.337	2.38	1	286340			13075	3123	9137	9155	14460	14460					0.01313766615521672
ENITTSNL	8	Unmodified	_ENITTSNL_					0	0	0		nc|ENSG00000169550|Q8N387-2|MUC15;nc|ENSG00000169550|Q8N387|MUC15;ENSG00000169550|ENST00000529533|MUC15	nc|ENSG00000169550|Q8N387-2|MUC15	nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.6361389160156	2	446.224539	890.434526	-0.35022	-0.00015628	0.75918	0.00033876	0.40895	0.00018249	446.22476052838795	38.958	0.53962	38.958	38.68	39.219	0					38	14	4	0	0	0	0.027866	1	3322	3322		20.947	0	1	1112000			13076	7947	9138	9156	14461	14461					-0.015073886158120331
ENIVNLLGAC	10	Unmodified	_ENIVNLLGAC_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R;ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3	ENSG00000182578|ENST00000675795|CSF1R;ENSG00000122025|ENST00000241453|FLT3	ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.30810546875	2	523.270967	1044.52738	-1.3724	-0.00071812	-2.215	-0.0011591	-3.5874	-0.0018772	523.2696886553385	31.239	0.4668	31.239	30.961	31.428	0					18	10	2	0	0	0	0.03519	1	2053	2053		37.812	14.769	1	216970			13077	9145;3907	9139	9157	14462	14462					0.006897928459238756
ENIVSAVEP	9	Unmodified	_ENIVSAVEP_					0	0	0		ENSG00000169783|ENST00000355300|LINGO1;nc|ENSG00000169783|Q96FE5-2|LINGO1;LINGO1|p.Q164Rfs*33|1|0.05|ENSG00000169783|chr15:77615418-77615418|A/-|frameshift_variant	ENSG00000169783|ENST00000355300|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7693786621094	2	479.248015	956.481476	-0.9655	-0.00046272	3.2534	0.0015592	2.2879	0.0010965	479.24882271607737	51.663	0.38513	51.75	51.577	51.963	0.087006					11	10	2	0	0	0	0.023473	1	5420	5420		65.465	16.024	1	58396			13078	7976	9140	9158	14463	14463					0.001494709353437429
ENIVYYKD	8	Unmodified	_ENIVYYKD_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;MICAL1|p.E559Sfs*15|1|0.32|ENSG00000135596|chr6:109448384-109448384|T/-|frameshift_variant;ENST00000456101.6_1_6:109766698-109772967:-|nuORF;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2	ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7894287109375	2	522.25584	1042.49713	0.49142	0.00025665	-2.5799	-0.0013474	-2.0885	-0.0010907	522.7571988577375	84.158	0.6087	84.021	83.672	84.28	-0.13789					19	13	2	0	0	0	0.027866	1	10165	10165		44.377	11.565	1	46593			13079	10806;4910;18759;18282;18281	9141	9159	14464	14464					-0.022422425476179342
ENKASSGSW	9	Unmodified	_ENKASSGSW_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2196350097656	2	483.219788	964.425024	-0.08648	-4.1789E-05	0.030008	1.4501E-05	-0.056472	-2.7288E-05	483.21965369287017	32.256	0.70733	32.098	31.737	32.444	-0.15772					37	16	3	0	0	0	0.34489	1	2185	2185		69.628	7.9363	1	955360			13080	9876	9142	9160	14465	14465					-0.058611569013237386
ENKEQYHEE	9	Unmodified	_ENKEQYHEE_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8111877441406	3	402.507158	1204.49965	0.56679	0.00022814	2.3067	0.00092847	2.8735	0.0011566	402.5079879580756	29.044	0.47486	28.872	28.681	29.156	-0.17258					17	10	2	0	0	0	0.024541	1	1717	1717		26.063	19.404	1	74895			13081	928	9143	9161	14466	14466					-0.09442438880591908
ENKGNRTNQAL	11	Unmodified	_ENKGNRTNQAL_					0	0	0		ENST00000546659.1_1_12:94620936-94621053:+|nuORF;ENSG00000136040|ENST00000258526|PLXNC1	ENST00000546659.1_1_12:94620936-94621053:+|nuORF	ENST00000546659.1_1_12:94620936-94621053:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.559814453125	3	415.54958	1243.62691	-0.31261	-0.0001299	4.1289	0.0017158	3.8163	0.0015859	415.8856400956106	26.902	0.42983	26.745	26.544	26.974	-0.15664					13	9	2	0	0	0	0.024727	1	1392	1392		17.833	0	1	40030			13082	4973	9144	9162	14467	14467					0.01484326784247969
ENKILDYLT	9	Unmodified	_ENKILDYLT_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.7724609375	2	554.797872	1107.58119	-0.029184	-1.6191E-05	2.5154	0.0013956	2.4862	0.0013794	555.3012337605193	37.417	0.4671	37.224	37.076	37.543	-0.193					18	11	2	0	0	0	0.024541	1	3024	3024		10.265	0	1	168090			13083	762	9145	9163	14468	14468					0.031702885492677524
ENKIRSTL	8	Unmodified	_ENKIRSTL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.77734375	2	480.777274	959.539994	0.24131	0.00011602	-0.61038	-0.00029346	-0.36907	-0.00017744	480.77695466379254	27.761	1.4132	27.519	26.911	28.325	-0.24217					89	33	5	0	0	0	0.50717	2	1565	1553;1565		84.916	10.66	1	4879700			13084	1617	9146	9164	14469;14470	14470					0.058605723004689025
ENKIRSTL	8	Unmodified	_ENKIRSTL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.7771301269531	2	480.777274	959.539994	-0.85034	-0.00040882	0.5282	0.00025395	-0.32214	-0.00015488	480.7775011475017	27.6	1.002	27.431	26.766	27.768	-0.16816					71	23	5	0	0	0	0.4075	1	1539	1539		96.19	19.416	1	5196700			13085	1617	9146	9164	14471	14471					0.058605723004689025
ENKIRSTL	8	Unmodified	_ENKIRSTL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.7773742675781	2	480.777274	959.539994	0.0058086	2.7927E-06	-0.33022	-0.00015876	-0.32441	-0.00015597	480.7770348232824	27.707	1.6355	27.551	26.844	28.479	-0.15664					94	39	6	0	0	0	0.4075	3	1548	1521;1534;1548		96.19	18.486	1	5748800			13086	1617	9146	9164	14472;14473;14474	14474					0.058605723004689025
ENKKLFRR	8	Unmodified	_ENKKLFRR_					0	0	0			REV__ENSG00000130147|ENST00000392011|SH3BP4	REV__ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.7769165039062	2	545.827632	1089.64071	-0.44419	-0.00024245	2.5392	0.001386	2.095	0.0011435	545.8288177410946	75.712	1.3396	75.723	75.436	76.775	0.011642					71	34	3	0	0	0	0.027866	1	9386	9386		30.504	0	1	2214000	+		13087	23083	9147	9165	14475	14475					0.09947649073978937
ENKLHRIA	8	Unmodified	_ENKLHRIA_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2708740234375	2	490.785433	979.556313	-0.14234	-6.9856E-05	1.9603	0.00096209	1.818	0.00089223	490.7850546311654	41.554	0.3584	41.431	41.328	41.687	-0.12317					10	9	2	0	0	0	0.027866	1	3712	3712		40.573	0	1	62681	+		13088	25660	9148	9166	14476	14476					0.06571698257221215
ENKLNKILL	9	Unmodified	_ENKLNKILL_					0	0	0			REV__nc|ENSG00000122218|P53621-2|COPA	REV__nc|ENSG00000122218|P53621-2|COPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8201293945312	2	542.839874	1083.66519	-1.4922	-0.00081005	0.18569	0.0001008	-1.3066	-0.00070925	542.8398365505798	47.64	0.69784	47.699	47.522	48.22	0.059097					44	20	4	0	0	0	0.024319	1	4738	4738		56.721	22.549	1	888070	+		13089	22632	9149	9167	14477	14477					0.1267086443685912
ENKLQIHLAR	10	Unmodified	_ENKLQIHLAR_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.5384216308594	3	407.906928	1220.69895	-0.15028	-6.1298E-05	-4.0965	-0.001671	-4.2468	-0.0017323	408.2408123289349	30.61	0.58534	30.432	30.164	30.75	-0.17818					20	13	2	0	0	0	0.03519	1	1981	1981		20.03	0	1	247810			13090	8782	9150	9168	14478	14478					0.09743285928584555
ENKLSSLPD	9	Unmodified	_ENKLSSLPD_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7582702636719	2	501.758746	1001.50294	-0.25565	-0.00012827	-1.1891	-0.00059664	-1.4448	-0.00072492	502.2579290242891	70.167	0.71099	69.899	69.41	70.121	-0.26724					38	16	4	0	0	0	0.024477	1	8158	8158		14.865	0	1	313440			13091	3756	9151	9169	14479	14479					0.002248559640406711
ENKMLRLQ	8	Unmodified	_ENKMLRLQ_					0	0	0		ENST00000465876.5_1_1:60281005-60331594:+|nuORF;nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	ENST00000465876.5_1_1:60281005-60331594:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3069458007812	2	516.286951	1030.55935	1.0074	0.00052012	-3.6842	-0.0019021	-2.6768	-0.001382	516.2847764594368	20.375	0.53138	20.179	19.854	20.385	-0.19577					23	10	3	0	0	0	0.027866	1	550	550		31.955	0	1	185480			13092	4820	9152	9170	14480	14480					0.04529205319727225
ENKNIPEIL	9	Unmodified	_ENKNIPEIL_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;ENST00000561258.1_1_15:62276000-62283926:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.772216796875	2	535.298039	1068.58152	-0.9464	-0.00050661	-1.3334	-0.00071375	-2.2798	-0.0012204	535.2971264214992	79.84	0.62849	79.861	79.645	80.274	0.021439					26	14	2	0	0	0	0.024539	1	9854	9854		9.7057	0	1	365990			13093	4326	9153	9171	14481	14481					0.04997708269138457
ENKQPEKEED	10	Unmodified	_ENKQPEKEED_					0	0	0			REV__ENST00000586344.5_1_19:5917623-5933521:-|nuORF	REV__ENST00000586344.5_1_19:5917623-5933521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.195068359375	3	415.857968	1244.55207	-0.45294	-0.00018836	2.8906	0.0012021	2.4377	0.0010137	415.8590716919388	39.718	0.43348	39.495	39.149	39.583	-0.22311					13	10	2	0	0	0	0.03519	1	3365	3365		48.602	0	1	131110	+		13094	35597	9154	9172	14482	14482					-0.06041900537661604
ENKQRLED	8	Unmodified	_ENKQRLED_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2877807617188	2	516.259445	1030.50434	-0.52582	-0.00027146	1.0338	0.00053373	0.50803	0.00026227	516.2597967229499	24.985	0.43737	24.758	24.581	25.018	-0.22683					12	9	2	0	0	0	0.027866	1	1134	1134		20.947	0	1	73919			13095	9932	9155	9173	14483	14483					-0.009695099471855428
ENKQRLED	8	Unmodified	_ENKQRLED_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2876586914062	2	516.259445	1030.50434	-0.087866	-4.5361E-05	0.28888	0.00014914	0.20102	0.00010378	516.2592947822282	24.684	0.48226	24.509	24.383	24.865	-0.17484					23	10	3	0	0	0	0.027866	1	1084	1084		74.255	13.283	1	83444			13096	9932	9155	9173	14484	14484					-0.009695099471855428
ENKRNQVK	8	Unmodified	_ENKRNQVK_					0	0	0		ENST00000602063.5_1_19:52507054-52510548:-|nuORF;ENST00000594083.5_1_19:52507054-52511423:-|nuORF	ENST00000602063.5_1_19:52507054-52510548:-|nuORF	ENST00000602063.5_1_19:52507054-52510548:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2357177734375	2	508.285797	1014.55704	-0.82621	-0.00041995	-3.6814	-0.0018712	-4.5076	-0.0022911	508.28585993664376	31.501	0.33311	31.501	31.257	31.591	0					11	7	2	0	0	0	0.027866	1	2090	2090		56.721	50.408	1	48313			13097	17400	9156	9174	14485	14485					0.050344929062816846
ENKRTHNDII	10	Unmodified	_ENKRTHNDII_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2403869628906	3	413.886192	1238.63675	-0.037025	-1.5324E-05	1.2954	0.00053614	1.2584	0.00052081	413.8863511698822	34.384	0.4565	34.16	33.923	34.379	-0.22412					17	11	2	0	0	0	0.03519	1	2491	2491		14.086	0	1	118490			13098	1995	9157	9175	14486	14486					0.026975147896109775
ENKRTPSPG	9	Unmodified	_ENKRTPSPG_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7906494140625	2	493.256705	984.498858	-1.1085	-0.00054678	2.0391	0.0010058	0.93062	0.00045904	493.2573310277595	24.422	0.31247	24.375	24.22	24.533	-0.047148					12	6	2	0	0	0	0.023837	1	1036	1036		74.255	26.339	1	73125			13099	7789	9158	9176	14487	14487					0.005988112610111784
ENKVKKIQ	8	Unmodified	_ENKVKKIQ_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7657775878906	2	493.803291	985.59203	-1.1702	-0.00057784	0.5438	0.00026853	-0.62638	-0.00030931	493.8034662749283	40.82	0.66269	40.589	40.378	41.041	-0.23029					29	17	2	0	0	0	0.027866	1	3571	3571		47.916	7.1374	1	504010			13100	2817	9159	9177	14488	14488					0.09865735714231505
ENKWKEDEYPR	11	Unmodified	_ENKWKEDEYPR_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.7640380859375	3	498.572162	1492.69466	-0.5719	-0.00028513	-3.2774	-0.001634	-3.8493	-0.0019192	498.5705999320628	42.465	0.70547	42.235	41.965	42.67	-0.23029					47	18	4	0	0	0	0.024846	1	3813	3813		8.0344	0	1	1775300			13101	8434	9160	9178	14489	14489					-0.0319826807563004
ENKYRRKTK	9	Unmodified	_ENKYRRKTK_					0	0	0			REV__ENST00000467481.1_1_13:20233151-20235156:+|nuORF	REV__ENST00000467481.1_1_13:20233151-20235156:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.5384216308594	3	408.238678	1221.6942	-0.3052	-0.00012459	-3.0928	-0.0012626	-3.398	-0.0013872	408.2370416639831	30.208	0.80103	30.03	29.782	30.583	-0.17817					38	18	3	0	0	0	0.024484	1	1981	1981		7.8045	0	1	183110	+		13102	33074	9161	9179	14490	14490					0.09222401785837064
ENLAAWGR	8	Unmodified	_ENLAAWGR_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.22467041015625	2	458.735409	915.456264	-0.9473	-0.00043456	0.32632	0.0001497	-0.62097	-0.00028486	458.7339064960077	26.114	0.70315	25.95	25.716	26.419	-0.16331					32	20	3	0	0	0	0.027866	1	1361	1361		13.454	0	1	978230			13103	18258	9162	9180	14491	14491					-0.004845390765808588
ENLDYLDGV	9	Unmodified	_ENLDYLDGV_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.79296875	2	519.242929	1036.47131	-0.5035	-0.00026144	-0.4756	-0.00024695	-0.9791	-0.00050839	519.2425271040107	64.522	1.0287	64.287	63.579	64.607	-0.2345					32	25	2	0	0	0	0.024397	1	7285	7285		39.253	8.7492	1	282480			13104	4483	9163	9181	14492	14492					-0.045471367898926474
ENLEVHSL	8	Unmodified	_ENLEVHSL_					0	0	0		ENST00000418066.2_1_2:69871997-69880284:+|nuORF	ENST00000418066.2_1_2:69871997-69880284:+|nuORF	ENST00000418066.2_1_2:69871997-69880284:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2557678222656	2	470.740357	939.46616	0.26293	0.00012377	-0.36102	-0.00016995	-0.09809	-4.6175E-05	470.74003105679014	44.711	0.76104	44.748	44.306	45.067	0.0369					30	21	2	0	0	0	0.027866	1	4212	4212		53.351	19.179	1	271680			13105	13928	9164	9182	14493	14493					-0.005993958618546458
ENLEYTKTV	9	Unmodified	_ENLEYTKTV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant;ENST00000476776.1_1_13:23927912-23929028:-|nuORF	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3370361328125	2	548.779679	1095.5448	-0.53178	-0.00029183	-2.1176	-0.0011621	-2.6493	-0.0014539	548.7783448877009	66.604	2.3859	66.604	66.368	68.754	0					119	62	3	0	0	0	0.024344	1	8170	8170		45.972	0	1	1152300			13106	6234	9165	9183	14494	14494					0.0008541165257156536
ENLFITFGSP	10	Unmodified	_ENLFITFGSP_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.3181762695312	2	562.784764	1123.55498	-0.15998	-9.0035E-05	-3.3524	-0.0018867	-3.5123	-0.0019767	562.783262012517	61.739	0.59991	61.525	61.252	61.852	-0.21375					21	14	2	0	0	0	0.03519	1	6931	6931		47.96	0	1	261140	+		13107	21826	9166	9184	14495	14495					-0.0018598062217733968
ENLFITFGSP	10	Unmodified	_ENLFITFGSP_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.3179321289062	2	562.784764	1123.55498	-0.30587	-0.00017214	-3.9835	-0.0022419	-4.2894	-0.002414	562.783016084949	61.803	0.84047	61.546	61.217	62.058	-0.25725					25	20	2	0	0	0	0.03519	1	6926	6926		56.434	15.656	1	268760	+		13108	21826	9166	9184	14496	14496					-0.0018598062217733968
ENLGSSRCL	9	Unmodified	_ENLGSSRCL_					0	0	0			REV__ENST00000570932.5_1_17:79094187-79095082:-|nuORF	REV__ENST00000570932.5_1_17:79094187-79095082:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.78131103515625	2	489.737291	977.460029	-0.75798	-0.00037121	1.6873	0.00082634	0.92934	0.00045513	489.7378647691043	36.497	0.60363	36.535	36.199	36.803	0.038044					27	16	2	0	0	0	0.024495	1	2815	2815		26.693	10.22	1	196640	+		13109	35398	9167	9185	14497	14497					-0.0296023736503912
ENLINFHI	8	Unmodified	_ENLINFHI_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7869873046875	2	500.266542	998.51853	-0.1501	-7.509E-05	1.4821	0.00074146	1.332	0.00066637	500.2666167827716	60.32	0.77974	60.32	60.027	60.807	0					55	20	4	0	0	0	0.027866	1	6931	6931		47.916	1.9636	1	1850100			13110	3022	9168	9186	14498	14498					0.01921187271761937
ENLINFHI	8	Unmodified	_ENLINFHI_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7872009277344	2	500.266542	998.51853	-0.5869	-0.00029361	1.6544	0.00082762	1.0675	0.00053402	500.2667667539205	60.533	0.91145	60.32	60	60.912	-0.2134					50	23	4	0	0	0	0.027866	1	6934	6934		40.573	7.057	1	1820700			13111	3022	9168	9186	14499	14499					0.01921187271761937
ENLKALIN	8	Unmodified	_ENLKALIN_					0	0	0			REV__ENSG00000176979|ENST00000512596|TRIM60	REV__ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7812805175781	2	457.768917	913.523281	-0.27982	-0.00012809	0.20519	9.3928E-05	-0.074637	-3.4167E-05	457.7688773419713	49.301	0.94786	49.2	48.506	49.454	-0.1008					39	24	3	0	0	0	0.027866	1	4927	4927		19.104	0	1	914030	+		13112	27071	9169	9187	14500	14500					0.06306071414519465
ENLKHELE	8	Unmodified	_ENLKHELE_					0	0	0		nc|ENSG00000248905|Q68DA7-5|FMN1;ENSG00000248905|ENST00000616417|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1;ENSG00000248905|ENST00000616417|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3236999511719	2	506.258914	1010.50327	-0.95626	-0.00048412	0.33922	0.00017173	-0.61705	-0.00031239	506.25874489234553	38.976	0.57695	39	38.844	39.421	0.023727					27	15	2	0	0	0	0.027866	1	3293	3293		37.159	5.6293	1	295860			13113	18767;10837	9170	9188	14501	14501					-0.0015572431609598425
ENLKINFR	8	Unmodified	_ENLKINFR_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.265625	2	517.293091	1032.57163	-0.77808	-0.00040249	3.3255	0.0017202	2.5474	0.0013178	517.2934569507129	57.137	0.37816	57.232	56.978	57.356	0.095306					13	9	2	0	0	0	0.027866	1	6314	6314		49.442	22.749	1	106770			13114	1059	9171	9189	14502	14502					0.05664565054416926
ENLKKRRR	8	Unmodified	_ENLKKRRR_					0	0	0		ENST00000371485.7_1_10:95276943-95278661:+|nuORF	ENST00000371485.7_1_10:95276943-95278661:+|nuORF	ENST00000371485.7_1_10:95276943-95278661:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2984008789062	2	550.343981	1098.67341	0.42091	0.00023165	2.2372	0.0012312	2.6581	0.0014629	550.3449434318183	54.371	0.91758	54.168	53.916	54.834	-0.20295					58	24	5	0	0	0	0.027866	1	5835	5835		29.15	0	1	1309800			13115	12999	9172	9190	14503	14503					0.1280185619684744
ENLKLVALN	9	Unmodified	_ENLKLVALN_					0	0	0			REV__ENSG00000120251|ENST00000264426|GRIA2;REV__nc|ENSG00000155511|P42261-3|GRIA1;REV__nc|ENSG00000125675|P42263|GRIA3	REV__nc|ENSG00000125675|P42263|GRIA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7919006347656	2	507.303124	1012.5917	-0.9039	-0.00045855	0.054278	2.7535E-05	-0.84962	-0.00043102	507.30317878245387	44.834	0.48716	44.834	44.519	45.006	0					19	13	2	0	0	0	0.024319	1	4257	4257		47.657	0	1	574180	+		13116	22518;25009;36636	9173	9191	14504	14504					0.0859031599438822
ENLKLVALN	9	Unmodified	_ENLKLVALN_					0	0	0			REV__ENSG00000120251|ENST00000264426|GRIA2;REV__nc|ENSG00000155511|P42261-3|GRIA1;REV__nc|ENSG00000125675|P42263|GRIA3	REV__nc|ENSG00000125675|P42263|GRIA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.303124	1012.5917	-1.0033	-0.00050898	0.1772	8.9897E-05	-0.82611	-0.00041909	507.30307733715335	44.988	0.38093	44.84	44.593	44.974	-0.1488	0.028752	-2.9337E-06	NaN	29.17	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573000	+		13117	22518;25009;36636	9173	9191							0.0859031599438822
ENLKVPRY	8	Unmodified	_ENLKVPRY_					0	0	0			REV__ENSG00000049541|ENST00000055077|RFC2	REV__ENSG00000049541|ENST00000055077|RFC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7741394042969	2	509.787641	1017.56073	-0.8852	-0.00045126	0.22704	0.00011574	-0.65816	-0.00033552	509.7875520983294	44.759	0.76562	44.66	44.354	45.12	-0.099445					44	16	4	0	0	0	0.027866	1	4157	4157		31.955	3.7006	1	1666400	+		13118	20147	9174	9192	14505	14505					0.05265162680143476
ENLLLVHY	8	Unmodified	_ENLLLVHY_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7508850097656	2	500.776742	999.538931	-0.55433	-0.00027759	-3.4065	-0.0017059	-3.9608	-0.0019835	501.27513550408815	36.075	0.20141	35.87	35.786	35.987	-0.20518					7	5	2	0	0	0	0.027866	1	2785	2785		19.36	0	1	183630			13119	8378	9175	9193	14506	14506					0.03914357931569157
ENLLNILHW	9	Unmodified	_ENLLNILHW_					0	0	0		ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.268798828125	2	576.314023	1150.61349	-0.48802	-0.00028125	0.14745	8.4979E-05	-0.34056	-0.00019627	576.3139579258628	63.356	0.47348	63.172	62.915	63.388	-0.18386					20	11	2	0	0	0	0.024292	1	7182	7182		40.778	6.6056	1	266160			13120	11869	9176	9194	14507	14507					0.044211207429498245
ENLLQVVW	8	Unmodified	_ENLLQVVW_					0	0	0		ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENST00000506936.1_1_4:56768485-56770658:+|nuORF	ENSG00000090989|ENST00000381295|EXOC1	ENSG00000090989|ENST00000381295|EXOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7868957519531	2	500.776742	999.538931	-0.85621	-0.00042877	0.48455	0.00024265	-0.37165	-0.00018612	500.7768355772959	61.37	1.6789	61.112	60.418	62.097	-0.25725					54	41	2	0	0	0	0.027866	1	6753	6753		19.36	0	1	6053500			13121	1946	9177	9195	14508	14508					0.03914357931569157
ENLMHVLEG	9	Unmodified	_ENLMHVLEG_					0	0	0			REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7694702148438	2	521.255317	1040.49608	-0.73321	-0.00038219	-1.9929	-0.0010388	-2.7261	-0.001421	521.2538882126038	52.487	0.53148	52.218	51.981	52.513	-0.26903					18	13	2	0	0	0	0.024344	1	5465	5465		37.812	8.6415	1	626860	+		13122	20609	9178	9196	14509	14509					-0.022547801881728446
ENLNFFTV	8	Unmodified	_ENLNFFTV_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.81353759765625	2	492.245275	982.475997	0.082086	4.0406E-05	0.34677	0.0001707	0.42886	0.0002111	492.245215179965	53.55	0.75145	53.292	52.922	53.674	-0.25838					27	20	2	0	0	0	0.027866	1	5653	5653		21.96	4.5949	1	257140	+		13123	22290	9179	9197	14510	14510					-0.015942078564762596
ENLNIAIDV	9	Unmodified	_ENLNIAIDV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10-TUBGCP6|2|fusion;ATXN10-TUBGCP6|1|fusion	ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ATXN10-TUBGCP6|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.3214111328125	2	500.769114	999.523675	-0.25854	-0.00012947	0.34079	0.00017066	0.082251	4.1189E-05	500.7691467659275	63.233	0.67728	63.233	62.769	63.447	0					33	17	2	0	0	0	0.024025	1	7398	7398		71.877	15.156	1	538580			13124	165;4434	9180	9198	14511	14511					0.023894463437045488
ENLNLLPTSP	10	Unmodified	_ENLNLLPTSP_					0	0	0			REV__nc|ENSG00000124440|Q9Y2N7-6|HIF3A	REV__nc|ENSG00000124440|Q9Y2N7-6|HIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2556762695312	2	549.295496	1096.57644	0.1132	6.218E-05	3.0279	0.0016632	3.1411	0.0017254	549.297097980701	91.099	0.65752	90.96	90.744	91.402	-0.13942					32	15	3	0	0	0	0.03519	1	11188	11188		27.047	0	1	445480	+		13125	22762	9181	9199	14512	14512					0.03201404406536312
ENLNMDEFK	9	Unmodified	_ENLNMDEFK_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.2890625	2	570.255514	1138.49647	-1.2208	-0.00069617	-3.2552	-0.0018563	-4.476	-0.0025525	570.2527454606872	73.129	0.7711	73.129	72.782	73.553	0					33	19	3	0	0	0	0.024428	1	8975	8975		40.058	14.484	1	284950	+		13126	36714	9182	9200	14513	14513					-0.06723405258981074
ENLNSEEIY	9	Unmodified	_ENLNSEEIY_					0	0	0		nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000472776.1_1_2:122122630-122145458:-|nuORF	nc|ENSG00000074054|Q7Z460|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7509155273438	2	555.751118	1109.48768	-0.66652	-0.00037042	0.45423	0.00025244	-0.21228	-0.00011798	555.7512235782509	64.974	1.0461	64.719	64.386	65.432	-0.25563					50	25	4	0	0	0	0.22754	1	7398	7398		85.359	0	1	1440300			13127	1522	9183	9201	14514	14514					-0.06268055623786495
ENLPGQLRF	9	Unmodified	_ENLPGQLRF_					0	0	0		TP53|p.A86Vfs*55|1|0.06|ENSG00000141510|chr17:7676090-7676112|CAGGGGCCAGGAGGGGGCTGGTG/-|frameshift_variant;TP53|p.S90Vfs*55|1|0.31|ENSG00000141510|chr17:7676092-7676102|GGGGCCAGGAG/-|frameshift_variant;TP53|p.A79Sfs*69|1|0.52|ENSG00000141510|chr17:7676134-7676135|CT/-|frameshift_variant;TP53|p.V73Rfs*76|2|0.34|ENSG00000141510|chr17:7676152-7676153|-/G|frameshift_variant;TP53|p.R65Qfs*84|1|0.58|ENSG00000141510|chr17:7676176-7676177|-/G|frameshift_variant	TP53|p.A86Vfs*55|1|0.06|ENSG00000141510|chr17:7676090-7676112|CAGGGGCCAGGAGGGGGCTGGTG/-|frameshift_variant	TP53|p.A86Vfs*55|1|0.06|ENSG00000141510|chr17:7676090-7676112|CAGGGGCCAGGAGGGGGCTGGTG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.28271484375	2	537.290548	1072.56654	-1.1578	-0.00062206	-3.8985	-0.0020946	-5.0562	-0.0027167	537.2884468369643	65.486	0.45066	65.235	64.986	65.437	-0.25112					17	10	2	0	0	0	0.024477	1	7446	7446		27.882	12.24	1	482300			13128	38102	9184	9202	14515	14515					0.03316261191821468
ENLPGSLPPD	10	Unmodified	_ENLPGSLPPD_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3118286132812	2	519.758746	1037.50294	-0.69201	-0.00035968	-3.9113	-0.0020329	-4.6033	-0.0023926	519.7562721345524	53.177	0.39899	53.177	52.938	53.337	0					16	10	2	0	0	0	0.03519	1	5743	5743		51.193	1.6567	1	472830			13129	1686	9185	9203	14516	14516					-0.014311440359506378
ENLPTFFPL	9	Unmodified	_ENLPTFFPL_					0	0	0		ENST00000489456.1_1_2:220434040-220434103:+|nuORF	ENST00000489456.1_1_2:220434040-220434103:+|nuORF	ENST00000489456.1_1_2:220434040-220434103:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.821533203125	2	539.2844	1076.55425	-0.74754	-0.00040314	-1.0162	-0.00054802	-1.7637	-0.00095115	539.2838483052046	64.568	0.4895	64.568	64.347	64.836	0					19	12	2	0	0	0	0.024367	1	7602	7602		29.17	1.0886	1	247240			13130	15410	9186	9204	14517	14517					0.019032247287668724
ENLPTIIL	8	Unmodified	_ENLPTIIL_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2897033691406	2	456.773668	911.532783	0.15625	7.1369E-05	-3.125	-0.0014274	-2.9688	-0.0013561	456.77219771586766	86.433	1.1968	86.388	85.861	87.058	-0.045097					34	27	2	0	0	0	0.027866	1	10763	10763		45.952	0	1	247380			13131	6082	9187	9205	14518	14518					0.0734783970007129
ENLQPLSM	8	Unmodified	_ENLQPLSM_					0	0	0			REV__ENSG00000179604|ENST00000335793|CDC42EP4	REV__ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2535095214844	2	466.23131	930.448068	-0.19361	-9.0269E-05	1.1236	0.00052388	0.93003	0.00043361	466.23205723075426	26.432	0.1862	26.264	26.153	26.339	-0.16816					8	4	2	0	0	0	0.027866	1	1372	1372		35.618	2.8059	1	52227	+		13132	27281	9188	9206	14519	14519					-0.019938541082183292
ENLQWGKPLCL	11	Unmodified	_ENLQWGKPLCL_					0	0	0		ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	ENST00000443387.2_1_19:36727320-36727398:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.780029296875	3	434.228791	1299.66454	-0.40362	-0.00017526	-3.5215	-0.0015292	-3.9252	-0.0017044	434.5622553742084	40.217	0.34744	39.986	39.811	40.158	-0.23021					13	8	2	0	0	0	0.024751	1	3469	3469		16.53	0	1	130320			13133	14398	9189	9207	14520	14520					0.02669701725494633
ENLREMIEES	10	Unmodified	_ENLREMIEES_					0	0	0		CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.5580139160156	3	417.195815	1248.56562	0.20927	8.7305E-05	3.7225	0.001553	3.9317	0.0016403	417.1972406347033	24.117	0.54309	24.195	23.958	24.501	0.078344					24	11	3	0	0	0	0.03519	1	1010	1010		14.694	0	1	167590			13134	235	9190	9208	14521	14521					-0.04872366030053854
ENLRFPNN	8	Unmodified	_ENLRFPNN_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76678466796875	2	502.251423	1002.48829	1.4273	0.00071689	2.2462	0.0011281	3.6735	0.001845	502.25238228415014	59.034	0.61045	58.847	58.575	59.186	-0.18705					25	16	2	0	0	0	0.027866	1	6659	6659		38.806	13.356	1	1134000			13135	10421	9191	9209	14522	14522					-0.012851713934310283
ENLRKRPA	8	Unmodified	_ENLRKRPA_					0	0	0		nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	nc|ENSG00000253868|Q96M78|FER1L6-AS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2836608886719	2	492.290882	982.567212	-0.25522	-0.00012564	2.8762	0.0014159	2.621	0.0012903	492.29212895134054	71.381	0.55597	71.106	70.877	71.433	-0.27509					19	12	2	0	0	0	0.027866	1	8310	8310		52.299	0	1	260940			13136	18770	9192	9210	14523	14523					0.07523100631510715
ENLRRSAGG	9	Unmodified	_ENLRRSAGG_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2846374511719	2	480.254497	958.494441	-0.34993	-0.00016806	2.5923	0.001245	2.2424	0.0010769	480.25678608057206	75.689	0.25893	75.689	75.622	75.881	0					9	6	2	0	0	0	0.024466	1	9316	9316		24.519	6.2571	1	118170			13137	9837	9193	9211	14524	14524					0.013533468381069724
ENLRVPRA	8	Unmodified	_ENLRVPRA_					0	0	0		MYO1C|p.R658P|1|0.05|ENSG00000197879|chr17:1471955-1471955|C/G|missense_variant	MYO1C|p.R658P|1|0.05|ENSG00000197879|chr17:1471955-1471955|C/G|missense_variant	MYO1C|p.R658P|1|0.05|ENSG00000197879|chr17:1471955-1471955|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.2691345214844	2	477.777608	953.540663	0.46823	0.00022371	2.4318	0.0011618	2.9	0.0013856	477.77860978988895	100.82	0.79342	100.69	100.44	101.24	-0.12576					30	21	2	0	0	0	0.027866	1	12593	12593		19.997	0.6368	1	212570			13138	18013	9194	9212	14525	14525					0.062034117401822186
ENLRVRRA	8	Unmodified	_ENLRVRRA_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7695007324219	2	507.301781	1012.58901	-1.2306	-0.00062428	-4.4447	-0.0022548	-5.6753	-0.0028791	507.300190021254	36.12	0.48492	36.078	35.83	36.315	-0.042454					18	13	2	0	0	0	0.027866	1	2845	2845		65.803	0	1	219640			13139	10060	9195	9213	14526	14526					0.08321905380091721
ENLTPCLKI	9	Carbamidomethyl (C)	_ENLTPC(Carbamidomethyl (C))LKI_	ENLTPC(1)LKI		ENLTPC(110)LKI		0	1	0			REV__ENSG00000177414|ENST00000371077|UBE2U	REV__ENSG00000177414|ENST00000371077|UBE2U	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7954711914062	2	544.294442	1086.57433	-1.197	-0.0006515	-0.12411	-6.7552E-05	-1.3211	-0.00071905	544.7959427233145	54.895	1.224	54.993	54.558	55.782	0.098015					66	29	4	0	0	0	0.094442	2	5948	5948;5959		112.41	16.596	1	5757500	+		13140	27111	9196	9214	14527;14528	14527	358				0.0345065239705491
ENLTPCLKI	9	Carbamidomethyl (C)	_ENLTPC(Carbamidomethyl (C))LKI_					0	1	0			REV__ENSG00000177414|ENST00000371077|UBE2U	REV__ENSG00000177414|ENST00000371077|UBE2U	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.294442	1086.57433	-0.93277	-0.0005077	-0.86245	-0.00046943	-1.7952	-0.00097713	544.7955488438155	55.233	1.1206	55.087	54.389	55.509	-0.14609	0.011546	-0.00037452	NaN	112.41	49	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610740	+		13141	27111	9196	9214			358				0.0345065239705491
ENLTPCLKI	9	Carbamidomethyl (C)	_ENLTPC(Carbamidomethyl (C))LKI_					0	1	0			REV__ENSG00000177414|ENST00000371077|UBE2U	REV__ENSG00000177414|ENST00000371077|UBE2U	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.294442	1086.57433	-0.34906	-0.00018999	-2.0094	-0.0010937	-2.3585	-0.0012837	544.2924476397685	55.286	0.64648	55.055	54.711	55.357	-0.23087	-0.020905	-0.0016231	NaN	112.41	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527900	+		13142	27111	9196	9214			358				0.0345065239705491
ENLTRLLL	8	Unmodified	_ENLTRLLL_					0	0	0		ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF;ENST00000557056.5_1_14:24787624-24791466:-|nuORF	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.3089294433594	2	486.297842	970.581131	-0.36111	-0.00017561	-3.0689	-0.0014924	-3.43	-0.001668	486.29675730094743	20.861	0.24794	20.638	20.415	20.663	-0.22344					5	4	2	0	0	0	0.027866	1	561	561		68.787	12.066	1	19748			13143	32	9197	9215	14529	14529					0.09466333339958055
ENLTYSRR	8	Unmodified	_ENLTYSRR_					0	0	0			REV__ENSG00000197363|ENST00000359971|ZNF517	REV__ENSG00000197363|ENST00000359971|ZNF517	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2617797851562	2	519.76998	1037.52541	-1.4238	-0.00074003	1.2341	0.00064144	-0.18969	-9.8593E-05	519.7705623493334	22.032	0.82103	22.103	21.83	22.651	0.071735					45	16	4	0	0	0	0.027866	1	760	760		19.104	0	1	570340	+		13144	28296	9198	9216	14530	14530					0.008145001523189421
ENLVALKEI	9	Unmodified	_ENLVALKEI_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000476153.6_1_1:205492708-205496295:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2649536132812	2	514.802957	1027.59136	-0.70543	-0.00036316	-1.4459	-0.00074437	-2.1514	-0.0011075	514.80191080006	61.794	0.59118	61.794	61.453	62.044	0					15	10	2	0	0	0	0.02293	1	7185	7185		91.265	5.4034	1	1134400			13145	1225;15735	9199	9217	14531	14531					0.0786689627452688
ENLVALKEI	9	Unmodified	_ENLVALKEI_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000476153.6_1_1:205492708-205496295:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.802957	1027.59136	-0.056024	-2.8841E-05	-1.6702	-0.00085982	-1.7262	-0.00088866	514.8023589059125	61.992	0.39044	61.735	61.547	61.937	-0.25725	-0.035958	-2.3981E-05	NaN	91.265	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231410			13146	1225;15735	9199	9217							0.0786689627452688
ENLVALKEIRL	11	Unmodified	_ENLVALKEIRL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000476153.6_1_1:205492708-205496295:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.2645263671875	3	433.266122	1296.77654	-0.084095	-3.6435E-05	-0.20477	-8.8722E-05	-0.28887	-0.00012516	433.2659431687461	28.368	0.77506	28.216	27.922	28.698	-0.15195					53	18	4	0	0	0	0.70094	1	1626	1626		63.694	12.903	1	2413000			13147	1225;15735	9200	9218	14532	14532					0.14001879074135104
ENLVHLNED	9	Unmodified	_ENLVHLNED_					0	0	0			REV__ENSG00000185972|ENST00000335119|CCIN	REV__ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7645874023438	2	541.759278	1081.504	-1.6171	-0.00087609	2.0388	0.0011045	0.42165	0.00022843	542.2630374350078	49.585	0.55635	49.659	49.391	49.947	0.074196					27	14	2	0	0	0	0.024261	1	5090	5090		37.812	0	1	199000	+		13148	27817	9201	9219	14533	14533					-0.033489296670495605
ENLVKEKIKF	10	Unmodified	_ENLVKEKIKF_					0	0	0		nc|ENSG00000284862|Q9UFE4-2|CCDC39;nc|ENSG00000284862|Q9UFE4|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.3751831054688	2	624.371538	1246.72852	0.12567	7.8464E-05	-2.6403	-0.0016485	-2.5146	-0.00157	624.3698054304855	100.01	0.64535	100.01	99.663	100.31	0					28	16	2	0	0	0	1.0992	1	12806	12806		32.812	3.6424	1	707500			13149	18811	9202	9220	14534	14534					0.1150280515405484
ENLYFREK	8	Unmodified	_ENLYFREK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B;ENST00000497475.5_1_3:69245990-69247907:-|nuORF;ENST00000492155.5_1_10:13735712-13749128:-|nuORF;ENST00000470070.6_1_3:69247847-69370051:-|nuORF;ENST00000342409.3_1_10:13735712-14050160:-|nuORF	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2978515625	2	549.782556	1097.55056	-0.44188	-0.00024294	1.2934	0.00071109	0.85152	0.00046815	549.782832611225	54.587	0.28915	54.441	54.281	54.57	-0.14609					11	7	2	0	0	0	0.027866	1	5825	5825		45.952	3.5558	1	210250			13150	6204	9203	9221	14535	14535					0.005685549549070856
ENMGAAFQSM	10	2 Oxidation (M)	_ENM(Oxidation (M))GAAFQSM(Oxidation (M))_		ENM(1)GAAFQSM(1)		ENM(120)GAAFQSM(120)	0	0	2		ENSG00000140043|ENST00000555661|PTGR2	ENSG00000140043|ENST00000555661|PTGR2	ENSG00000140043|ENST00000555661|PTGR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2176513671875	2	559.218074	1116.42159	-1.0253	-0.00057337	0.29808	0.00016669	-0.72723	-0.00040668	559.218051131647	44.015	0.70252	43.771	43.483	44.186	-0.2444					39	18	3	0	0	0	0.17599	2	4056	4056;4069		124.08	25.548	1	2110500			13151	5388	9204	9222	14536;14537	14536		228;229			-0.13195911061848165
ENMGTLFAALE	11	Unmodified	_ENMGTLFAALE_					0	0	0			REV__ENSG00000180549|ENST00000314412|FUT7	REV__ENSG00000180549|ENST00000314412|FUT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	598.8177490234375	2	598.286814	1194.55907	-1.2293	-0.00073544	-0.66177	-0.00039593	-1.891	-0.0011314	598.2863740747317	73.974	1.1814	73.983	73.713	74.895	0.0096512					52	27	3	0	0	0	0.024629	1	8997	8997		68.846	19.405	1	1143800	+		13152	27347	9205	9223	14538	14538					-0.030422591908063623
ENMHWEWSHL	10	Unmodified	_ENMHWEWSHL_					0	0	0		ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.8640441894531	3	456.864511	1367.5717	-0.82296	-0.00037598	-1.8257	-0.00083409	-2.6486	-0.0012101	456.86362517855497	38.208	1.9376	37.986	37.686	39.624	-0.22149					159	52	5	0	0	0	1.1295	1	3115	3115		26.063	0.17167	1	9000200			13153	810	9206	9224	14539	14539					-0.09737803007897128
ENMKYGEQLL	10	Unmodified	_ENMKYGEQLL_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.2869873046875	2	612.800088	1223.58562	-1.2813	-0.00078515	-1.5735	-0.00096427	-2.8548	-0.0017494	612.7992518028047	64.996	1.013	64.794	64.461	65.474	-0.20254					56	24	4	0	0	0	0.03519	1	7500	7500		40.058	23.341	1	971210			13154	1136	9207	9225	14540	14540					-0.017225702994437597
ENMPGAVI	8	Unmodified	_ENMPGAVI_					0	0	0			REV__ENST00000462569.5_1_21:46197196-46221663:-|nuORF	REV__ENST00000462569.5_1_21:46197196-46221663:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.7220458984375	2	415.707471	829.400389	0.0095629	3.9754E-06	-1.0097	-0.00041973	-1.0001	-0.00041575	415.7077741551481	42.336	0.71881	42.362	41.961	42.68	0.026012					27	20	2	0	0	0	0.027866	1	3858	3858		40.573	13.777	1	274380	+		13155	27700	9208	9226	14541	14541					-0.021135083084118378
ENMQLALLF	9	Unmodified	_ENMQLALLF_					0	0	0			REV__ENSG00000011275|ENST00000389902|RNF216;REV__MTHFD1L-RNF216|1|fusion	REV__MTHFD1L-RNF216|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2643432617188	2	539.78371	1077.55287	-0.9521	-0.00051393	-2.1953	-0.001185	-3.1474	-0.0016989	539.7826553400945	21.263	0.44233	21.173	20.911	21.354	-0.090094					12	8	2	0	0	0	0.024535	1	617	617		33.516	3.0119	1	20491	+		13156	36397;19924	9209	9227	14542	14542					0.017192673683439352
ENMQLALLF	9	Unmodified	_ENMQLALLF_					0	0	0			REV__ENSG00000011275|ENST00000389902|RNF216;REV__MTHFD1L-RNF216|1|fusion	REV__MTHFD1L-RNF216|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.78371	1077.55287	-0.66035	-0.00035644	-2.0102	-0.001085	-2.6705	-0.0014415	539.7826854425703	21.235	0.49094	21.307	21.008	21.499	0.071487	0.073557	6.9138E-05	NaN	30.504	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15395	+		13157	36397;19924	9209	9227							0.017192673683439352
ENMVQRVTP	9	Unmodified	_ENMVQRVTP_					0	0	0			REV__ENSG00000178075|ENST00000358160|GRAMD1C	REV__ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2435302734375	2	537.274041	1072.53353	-1.5285	-0.00082121	2.5115	0.0013493	0.983	0.00052814	537.2750933479091	55.666	0.48128	55.764	55.484	55.965	0.098015					17	12	2	0	0	0	0.023061	1	6058	6058		79.713	6.8333	1	96462	+		13158	27163	9210	9228	14543	14543					0.00016311077456521161
ENMWGKLI	8	Unmodified	_ENMWGKLI_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.78057861328125	2	495.757495	989.500437	-0.72695	-0.00036039	-2.3089	-0.0011447	-3.0359	-0.0015051	495.75605187523604	88.899	0.53903	88.729	88.505	89.044	-0.17053					28	12	3	0	0	0	0.027866	1	10883	10883		65.803	7.9919	1	211920	+		13159	23659	9211	9229	14544	14544					0.005267290254096224
ENNITGKRL	9	Unmodified	_ENNITGKRL_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3084716796875	2	522.793455	1043.57236	-1.2078	-0.00063144	1.9623	0.0010259	0.75447	0.00039443	522.7944947396637	32.79	0.68038	32.79	32.494	33.174	0					23	17	2	0	0	0	0.024447	1	2271	2271		40.778	0	1	234490			13160	1961	9212	9230	14545	14545					0.05231359703475391
ENNITGKRL	9	Unmodified	_ENNITGKRL_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.793455	1043.57236	-0.77106	-0.00040311	1.631	0.00085267	0.85993	0.00044956	522.7946532991439	32.677	0.4835	32.689	32.488	32.972	0.011799	0.009321	-8.2246E-05	NaN	32.812	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429460			13161	1961	9212	9230							0.05231359703475391
ENNLEAVAR	9	Unmodified	_ENNLEAVAR_					0	0	0		nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3;DNAAF3|p.G307Efs*12|1|0.06|ENSG00000167646|chr19:55160768-55160769|-/TTTCCTAAATT|frameshift_variant	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799987792969	2	508.261988	1014.50942	-0.7008	-0.00035619	4.3117	0.0021915	3.6109	0.0018353	508.2638143432409	47.832	0.34605	47.892	47.8	48.146	0.059097					15	9	3	0	0	0	0.02435	1	4805	4805		34.173	15.848	1	605040			13162	7716	9213	9231	14546	14546					0.0027479391542328813
ENNNTGIIKG	10	Unmodified	_ENNNTGIIKG_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.3037109375	2	530.275095	1058.53564	-0.59371	-0.00031483	2.158	0.0011444	1.5643	0.00082953	530.2751222291338	31.356	0.82124	31.367	31.041	31.863	0.011799					44	19	4	0	0	0	0.03519	1	2098	2098		58.23	24.057	1	605540			13163	6497	9214	9232	14547	14547					0.008710630869245506
ENNNVDKDK	9	Unmodified	_ENNNVDKDK_					0	0	0		nc|ENSG00000137760|Q96BT7-3|ALKBH8;nc|ENSG00000137760|Q96BT7-2|ALKBH8;ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2429809570312	2	538.25436	1074.49417	-0.60387	-0.00032504	1.5191	0.00081766	0.91522	0.00049262	538.2548281825657	55.52	0.35726	55.364	55.16	55.517	-0.15601					19	9	3	0	0	0	0.023093	1	6130	6130		82.75	5.4329	1	476020			13164	5149	9215	9233	14548	14548					-0.04010117672441993
ENNNVDKDK	9	Unmodified	_ENNNVDKDK_					0	0	0		nc|ENSG00000137760|Q96BT7-3|ALKBH8;nc|ENSG00000137760|Q96BT7-2|ALKBH8;ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	nc|ENSG00000137760|Q96BT7-3|ALKBH8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.25436	1074.49417	0.43385	0.00023352	-0.0031717	-1.7072E-06	0.43068	0.00023181	538.254307360926	55.483	0.25068	55.483	55.249	55.5	0	0.10751	-0.0013431	NaN	82.75	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501600			13165	5149	9215	9233							-0.04010117672441993
ENNPLGSLVI	10	Unmodified	_ENNPLGSLVI_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2921752929688	2	528.290214	1054.56587	-0.98513	-0.00052043	0.36181	0.00019114	-0.62332	-0.00032929	528.2904469993462	54.683	1.1455	54.683	54.428	55.573	0					75	32	3	0	0	0	0.83673	1	5998	5998		58.23	1.5089	1	10560000			13166	3269	9216	9234	14549	14549					0.040774217520947786
ENNQPQIVF	9	Unmodified	_ENNQPQIVF_					0	0	0		nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.2926025390625	2	544.772188	1087.52982	-1.1902	-0.0006484	-4.1372	-0.0022539	-5.3275	-0.0029022	544.7697097176722	35.072	1.1407	35.072	34.629	35.769	0					45	29	2	0	0	0	0.024344	1	2655	2655		45.972	19.279	1	109080			13167	16328	9217	9235	14550	14550					-0.0104403542475211
ENNRSKII	8	Unmodified	_ENNRSKII_					0	0	0			REV__ENSG00000007933|ENST00000367755|FMO3	REV__ENSG00000007933|ENST00000367755|FMO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7908020019531	2	487.274898	972.535243	-0.61858	-0.00030142	-4.3016	-0.0020961	-4.9202	-0.0023975	487.2717865192994	78.519	0.58507	78.535	78.315	78.9	0.015907					22	13	2	0	0	0	0.027866	1	9677	9677		76.774	7.1465	1	220720	+		13168	19870	9218	9236	14551	14551					0.047876881577167296
ENNTNHYSS	9	Unmodified	_ENNTNHYSS_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2481079101562	2	533.215234	1064.41592	-0.61548	-0.00032818	-1.4154	-0.0007547	-2.0309	-0.0010829	533.2139841112058	48.832	0.28886	48.65	48.484	48.773	-0.18206					15	7	3	0	0	0	0.024457	1	4851	4851		21.96	10.449	1	320800			13169	9775	9219	9237	14552	14552					-0.11371550257672425
ENPAALVV	8	Unmodified	_ENPAALVV_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2108459472656	2	406.729261	811.443968	0.068912	2.8028E-05	1.3458	0.00054738	1.4147	0.00057541	406.72932166434	27.282	0.29576	27.04	26.954	27.249	-0.24217					8	6	2	0	0	0	0.027866	1	1507	1507		17.365	5.8539	1	21395			13170	885	9220	9238	14553	14553					0.03070424460383947
ENPALLLI	8	Unmodified	_ENPALLLI_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000557391.1_1_14:24028960-24029655:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7678527832031	2	441.768386	881.522219	0.10055	4.4418E-05	-1.228	-0.00054249	-1.1275	-0.00049807	441.76794852794825	102.93	1.5122	102.8	102.45	103.96	-0.12723					102	35	5	0	0	0	0.94517	1	12783	12783		45.952	1.4209	1	19625000			13171	10532	9221	9239	14554	14554					0.07671857045625075
ENPALLRW	8	Unmodified	_ENPALLRW_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.801025390625	2	499.774534	997.534515	-0.47878	-0.00023928	2.4599	0.0012294	1.9811	0.00099011	500.2770699425636	31.47	0.32956	31.47	31.3	31.63	0					10	7	2	0	0	0	0.027866	1	2103	2103		68.485	0	1	219740			13172	1306	9222	9240	14555	14555					0.03564893508666955
ENPCQLRE	8	Unmodified	_ENPCQLRE_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.765625	2	494.729466	987.444379	0.49918	0.00024696	-0.43201	-0.00021373	0.067164	3.3228E-05	494.7290265315734	41.783	0.64885	41.783	41.505	42.154	0					37	18	3	0	0	0	0.027866	1	3855	3855		29.15	0	1	593930			13173	5591	9223	9241	14556	14556					-0.04984523882069425
ENPDDSEVP	9	Unmodified	_ENPDDSEVP_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.794921875	2	501.206544	1000.39853	0.23593	0.00011825	0.78257	0.00039223	1.0185	0.00051048	501.2067871037097	52.814	0.39786	52.556	52.365	52.763	-0.25838					16	9	2	0	0	0	0.024477	1	5475	5475		35.618	16.258	1	265170			13174	3719	9224	9242	14557	14557					-0.10164890583314445
ENPEFNTGY	9	Unmodified	_ENPEFNTGY_					0	0	0		ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2695922851562	2	535.724904	1069.43525	-1.7655	-0.00094583	-1.9249	-0.0010312	-3.6904	-0.0019771	535.7239286266373	29.685	0.92567	29.685	29.333	30.258	0					36	22	3	0	0	0	0.023093	1	1821	1821		93.143	15.826	1	538620			13175	10292	9225	9243	14558	14558					-0.09668593966762273
ENPEFNTGY	9	Unmodified	_ENPEFNTGY_					0	0	0		ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2694702148438	2	535.724904	1069.43525	-1.0099	-0.00054103	-2.734	-0.0014647	-3.7439	-0.0020057	535.723542380878	29.661	0.85296	29.664	29.388	30.241	0.0031357					37	20	3	0	0	0	0.024397	1	1810	1810		47.657	12.457	1	504400			13176	10292	9225	9243	14559	14559					-0.09668593966762273
ENPFATVK	8	Unmodified	_ENPFATVK_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.7690734863281	2	453.239993	904.465432	1.154	0.00052303	2.9296	0.0013278	4.0836	0.0018508	453.24123534484966	70.905	0.40491	70.905	70.7	71.105	0					15	9	2	0	0	0	0.027866	1	8561	8561		39.253	0	1	136840			13177	791	9226	9244	14560	14560					0.00937809489096253
ENPHKLLRVL	10	Unmodified	_ENPHKLLRVL_					0	0	0		LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant;ENSG00000147650|ENST00000276654|LRP12;nc|ENSG00000147650|Q9Y561-2|LRP12	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2108459472656	3	406.915423	1217.72444	-0.24386	-9.923E-05	0.046617	1.8969E-05	-0.19724	-8.0261E-05	406.9156534112758	26.817	0.82724	26.577	26.338	27.165	-0.23953					41	19	3	0	0	0	0.03519	1	1507	1507		25.126	0	1	287390			13178	5986	9227	9245	14561	14561					0.12428760451052767
ENPLIGPQL	9	Unmodified	_ENPLIGPQL_					0	0	0		ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2900390625	2	490.7742	979.533846	-0.4098	-0.00020112	0.9707	0.0004764	0.5609	0.00027528	490.77441284393	45.026	0.58382	45.026	44.758	45.342	0					25	16	2	0	0	0	0.02435	1	4331	4331		51.335	0	1	303970			13179	15817	9228	9246	14562	14562					0.04326054068940266
ENPLIGPQL	9	Unmodified	_ENPLIGPQL_					0	0	0		ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.7742	979.533846	-0.67376	-0.00033066	0.89113	0.00043735	0.21737	0.00010668	490.7744543684294	45.198	0.44672	45.049	44.866	45.312	-0.1488	-0.014381	7.3251E-05	NaN	51.335	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332360			13180	15817	9228	9246							0.04326054068940266
ENPLKRLL	8	Unmodified	_ENPLKRLL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27947998046875	2	491.805834	981.597115	0.31758	0.00015619	-2.5559	-0.001257	-2.2384	-0.0011008	491.8047773665048	41.156	0.31838	41.033	40.906	41.224	-0.12317					12	8	2	0	0	0	0.027866	1	3671	3671		32.812	0.85756	1	101610			13181	4198	9229	9247	14563	14563					0.10558039576847023
ENPLLRYV	8	Unmodified	_ENPLLRYV_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1;ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76654052734375	2	502.282192	1002.54983	-0.25567	-0.00012842	-0.33602	-0.00016878	-0.59169	-0.00029719	502.28202581152993	58.554	0.58552	58.367	58.173	58.758	-0.18705					24	15	2	0	0	0	0.027866	1	6634	6634		35.201	9.7505	1	876510			13182	8135	9230	9248	14564	14564					0.04865760305847289
ENPLLRYV	8	Unmodified	_ENPLLRYV_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1;ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.282192	1002.54983	0.031003	1.5572E-05	0.3329	0.00016721	0.3639	0.00018278	502.2821663185186	58.505	0.37219	58.317	58.136	58.509	-0.18795	-0.010859	0.00035083	NaN	26.796	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226830			13183	8135	9230	9248							0.04865760305847289
ENPLLRYV	8	Unmodified	_ENPLLRYV_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1;ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.282192	1002.54983	-0.015121	-7.5949E-06	0.28879	0.00014505	0.27367	0.00013746	502.282113261539	58.486	0.27868	58.299	58.182	58.461	-0.18647	-0.028393	0.00030652	NaN	26.796	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244100			13184	8135	9230	9248							0.04865760305847289
ENPLYEER	8	Unmodified	_ENPLYEER_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	525.248546	1048.48254	-0.61276	-0.00032185	-0.49649	-0.00026078	-1.1092	-0.00058263	525.2485720091311	28.537	0.42328	28.368	28.131	28.554	-0.16897					12	9	2	0	0	0	0.027866	1	1655	1655		30.318	10.958	1	27990			13185	8154	9231	9249	14565	14565					-0.03976314695773908
ENPPHALPL	9	Unmodified	_ENPPHALPL_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7502746582031	2	494.266542	986.51853	-0.24766	-0.00012241	-0.16807	-8.3073E-05	-0.41573	-0.00020548	494.26636997079	45.875	0.58574	45.779	45.529	46.115	-0.096649					35	15	3	0	0	0	0.024261	1	4360	4360		64.207	14.766	1	858650	+		13186	33749	9232	9250	14566	14566					0.024731872717552505
ENPPHALPL	9	Unmodified	_ENPPHALPL_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.75018310546875	2	494.266542	986.51853	-0.1957	-9.6729E-05	0.21346	0.00010551	0.01776	8.7784E-06	494.26645273222937	46.046	0.70654	45.785	45.416	46.123	-0.26118					41	18	3	0	0	0	0.024261	1	4390	4390		45.972	0	1	793580	+		13187	33749	9232	9250	14567	14567					0.024731872717552505
ENPPLSEKDL	10	Unmodified	_ENPPLSEKDL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	572.2697143554688	2	571.290411	1140.56627	-0.59791	-0.00034158	4.1161	0.0023515	3.5182	0.0020099	571.2925532766062	84.829	0.78696	84.756	84.468	85.255	-0.072769					53	18	4	0	0	0	0.03519	1	10602	10602		40.058	0	1	940520			13188	9730	9233	9251	14568	14568					0.001607966813025996
ENQAKERSL	9	Unmodified	_ENQAKERSL_					0	0	0			REV__nc|ENSG00000092200|Q96KN7-6|RPGRIP1	REV__nc|ENSG00000092200|Q96KN7-6|RPGRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2970581054688	2	537.780544	1073.54654	0.57059	0.00030685	2.2104	0.0011887	2.781	0.0014956	538.2821099530993	59.781	1.1752	59.781	59.333	60.509	0					63	29	3	0	0	0	0.024313	1	6813	6813		51.193	0	1	560580	+		13189	20929	9234	9252	14569	14569					0.01270465461175263
ENQECPRSL	9	Unmodified	_ENQECPRSL_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2435913085938	2	538.24548	1074.47641	-1.9393	-0.0010438	1.0288	0.00055377	-0.91044	-0.00049004	538.2448062933165	55.948	1.03	55.733	55.168	56.198	-0.21551					75	27	5	0	0	0	0.26966	1	6006	6006		79.713	0	1	10404000			13190	4640	9235	9253	14570	14570					-0.05785156198930963
ENQELERQH	9	Unmodified	_ENQELERQH_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ENST00000568930.1_1_16:50347751-50349413:+|nuORF	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	592.77685546875	2	591.778533	1181.54251	-0.2682	-0.00015872	-1.7291	-0.0010232	-1.9973	-0.0011819	591.777072909677	81.517	0.45917	81.288	81.105	81.564	-0.22891					18	10	2	0	0	0	0.024313	1	9767	9767		42.864	5.0528	1	155460			13191	3859	9236	9254	14571	14571					-0.040996240325284816
ENQGPCLAR	9	Unmodified	_ENQGPCLAR_					0	0	0			REV__nc|ENSG00000196923|Q9NR12-4|PDLIM7	REV__nc|ENSG00000196923|Q9NR12-4|PDLIM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.8056335449219	2	494.237458	986.460364	-0.27848	-0.00013763	-0.28513	-0.00014092	-0.56361	-0.00027855	494.238013646623	39.799	0.35546	39.575	39.342	39.697	-0.22372					16	8	3	0	0	0	0.024523	1	3361	3361		29.15	4.9468	1	156340	+		13192	37056	9237	9255	14572	14572					-0.033408176451757754
ENQIGCLTP	9	Unmodified	_ENQIGCLTP_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2820129394531	2	487.734217	973.453881	-0.3133	-0.00015281	-2.9519	-0.0014398	-3.2652	-0.0015926	487.7326341564115	54.659	2.9136	54.659	53.799	56.712	0					132	82	3	0	0	0	0.024344	1	6116	6116		23.523	3.5259	1	691760			13193	1175	9238	9256	14573	14573					-0.033907555965583924
ENQITAAF	8	Unmodified	_ENQITAAF_					0	0	0		nc|ENSG00000185483|Q01973-3|ROR1;ENSG00000185483|ENST00000371079|ROR1	nc|ENSG00000185483|Q01973-3|ROR1	nc|ENSG00000185483|Q01973-3|ROR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.76104736328125	2	447.2218	892.429047	-0.22602	-0.00010108	4.2169	0.0018859	3.9908	0.0017848	447.22359667595157	44.74	1.0972	44.777	44.273	45.37	0.0369					42	31	2	0	0	0	0.027866	1	4309	4309		19.36	1.0356	1	165060			13194	9444	9239	9257	14574	14574					-0.021470674076226715
ENQKRKPI	8	Unmodified	_ENQKRKPI_					0	0	0			REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|33|2|sense	REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|33|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.76971435546875	2	506.79854	1011.58253	-1.1781	-0.00059704	0.45726	0.00023174	-0.7208	-0.0003653	506.7991277027343	36.184	0.87807	36.184	35.886	36.764	0					40	24	3	0	0	0	0.027866	1	2873	2873		55.504	0	1	323980	+		13195	36215	9240	9258	14575	14575					0.0771996742871579
ENQLRITQV	9	Unmodified	_ENQLRITQV_					0	0	0		nc|ENSG00000144366|Q9UBP9-3|GULP1;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-3|GULP1	nc|ENSG00000144366|Q9UBP9-3|GULP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.7745361328125	2	550.806562	1099.59857	0.69458	0.00038258	2.5486	0.0014038	3.2432	0.0017864	550.8071922289005	55.483	0.25225	55.483	55.284	55.536	0					9	6	2	0	0	0	0.024477	1	6125	6125		14.865	0	1	224940			13196	5730	9241	9259	14576	14576					0.05275628874915128
ENQNLGHSET	10	Unmodified	_ENQNLGHSET_					0	0	0		ENST00000473253.5_1_3:174581768-175298945:+|nuORF;ENSG00000177694|ENST00000454872|NAALADL2;NAALADL2|p.D176Vfs*10|1|0.21|ENSG00000177694|chr3:175097268-175097278|AGAAGATATTA/-|frameshift_variant;nc|ENSG00000177694|Q58DX5-2|NAALADL2;ENST00000485853.5_1_3:174577149-174974391:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.80615234375	2	564.749441	1127.48433	-1.5264	-0.00086201	0.87456	0.00049391	-0.65179	-0.0003681	564.7497831068806	55.379	1.1003	55.477	55.183	56.283	0.098015					74	29	5	0	0	0	0.03519	1	6162	6162		37.812	4.9991	1	5108600			13197	8765	9242	9260	14577	14577					-0.07431305677800992
ENQPAVVHL	9	Unmodified	_ENQPAVVHL_					0	0	0		nc|ENSG00000158813|Q92838-9|EDA;nc|ENSG00000158813|Q92838-3|EDA;ENSG00000158813|ENST00000374552|EDA	nc|ENSG00000158813|Q92838-9|EDA	nc|ENSG00000158813|Q92838-9|EDA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2596130371094	2	503.769448	1005.52434	-0.17376	-8.7537E-05	0.47047	0.00023701	0.2967	0.00014947	503.7691281279571	22.368	0.70528	22.166	21.855	22.561	-0.20198					20	14	3	0	0	0	0.0245	1	802	802		36.447	14.487	1	98172			13198	6704	9243	9261	14578	14578					0.021802857834245515
ENQPRLLL	8	Unmodified	_ENQPRLLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF;EXOC4|p.E340K|1|0.28|ENSG00000131558|chr7:133374838-133374838|G/A|missense_variant	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.77752685546875	2	491.787641	981.56073	0.19532	9.6058E-05	1.5821	0.00077807	1.7774	0.00087412	491.7882000768646	46.395	0.53342	46.395	46.126	46.659	0					23	14	2	0	0	0	0.027866	1	4600	4600		30.504	0	1	1730800			13199	4534	9244	9262	14579	14579					0.06921162680146153
ENQQFKKE	8	Unmodified	_ENQQFKKE_					0	0	0		nc|ENSG00000176714|Q6ZUS5-2|CCDC121;ENSG00000176714|ENST00000324364|CCDC121	nc|ENSG00000176714|Q6ZUS5-2|CCDC121	nc|ENSG00000176714|Q6ZUS5-2|CCDC121	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2799682617188	2	525.764363	1049.51417	-0.16639	-8.748E-05	-0.51692	-0.00027178	-0.6833	-0.00035926	525.764700325271	44.008	0.28786	44.045	43.888	44.176	0.036903					8	7	2	0	0	0	0.027866	1	4117	4117		39.253	0	1	106270			13200	18540	9245	9263	14580	14580					-0.008603219417864238
ENQQKFFR	8	Unmodified	_ENQQKFFR_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.3377075195312	2	548.780348	1095.54614	-0.64191	-0.00035227	-3.378	-0.0018538	-4.0199	-0.0022061	548.7784024315553	66.654	2.5937	66.684	66.435	69.029	0.030106					118	66	2	0	0	0	0.027866	1	8125	8125		45.952	1.5748	1	870060	+		13201	23832;36707	9246	9264	14581	14581					0.002190905319821468
ENQRALVL	8	Unmodified	_ENQRALVL_					0	0	0			REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7718811035156	2	471.771991	941.529429	-0.30123	-0.00014211	0.080358	3.7911E-05	-0.22087	-0.0001042	471.7718853747908	40.157	1.2378	40.18	39.873	41.111	0.023006					76	34	3	0	0	0	0.47665	2	3473	3473;3487		87.754	7.8151	1	14076000	+		13202	19073	9247	9265	14582;14583	14582					0.056325896460293734
ENQREQYER	9	Unmodified	_ENQREQYER_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant;NCKAP5|p.P826Lfs*6|1|0.18|ENSG00000176771|chr2:132784334-132784334|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5;NCKAP5|p.C461Afs*12|1|0.23|ENSG00000176771|chr2:132785431-132785431|G/-|frameshift_variant;nc|ENSG00000176771|O14513-2|NCKAP5	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.2068176269531	3	417.861935	1250.56398	-0.28801	-0.00012035	0.6226	0.00026016	0.3346	0.00013982	417.86213241577366	26.998	0.62298	26.842	26.351	26.974	-0.15664					17	14	2	0	0	0	0.024511	1	1356	1356		8.6937	0	1	25490			13203	18863	9248	9266	14584	14584					-0.05128239003829549
ENQRISVVRL	10	Unmodified	_ENQRISVVRL_					0	0	0			REV__ENST00000469100.5_1_1:33240923-33241058:-|nuORF	REV__ENST00000469100.5_1_1:33240923-33241058:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.2386169433594	3	405.238566	1212.69387	0.80209	0.00032504	-0.54818	-0.00022214	0.25391	0.00010289	405.23838878540363	27	1.0374	27.081	26.758	27.795	0.081293					99	27	5	0	0	0	1.0447	1	1423	1423		40.058	1.3046	1	14939000	+		13204	33123	9249	9267	14585	14585					0.09602982065985088
ENQRLEAVL	9	Unmodified	_ENQRLEAVL_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1;ENST00000551538.5_1_14:105963624-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-4|TEDC1	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7686157226562	2	536.293288	1070.57202	0.94263	0.00050553	4.4582	0.0023909	5.4009	0.0028964	536.2917336746514	37.1	0.38655	37.1	36.846	37.233	0					15	9	3	0	0	0	0.024209	1	2996	2996		39.253	0	1	256850			13205	9431	9250	9268	14586	14586					0.039559399836207376
ENQRLGGDVQ	10	Unmodified	_ENQRLGGDVQ_					0	0	0		IL7R|p.K337N|1|0.27|ENSG00000168685|chr5:35876117-35876117|G/T|missense_variant	IL7R|p.K337N|1|0.27|ENSG00000168685|chr5:35876117-35876117|G/T|missense_variant	IL7R|p.K337N|1|0.27|ENSG00000168685|chr5:35876117-35876117|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.2754516601562	2	558.275626	1114.5367	-0.18649	-0.00010411	-0.34897	-0.00019482	-0.53546	-0.00029893	558.2753238055224	31.264	0.68665	31.333	31.04	31.726	0.068962					62	16	6	0	0	0	0.56936	1	2028	2028		80.455	3.137	1	1805200			13206	17765	9251	9269	14587	14587					-0.01598722544190423
ENQRNFNE	8	Unmodified	_ENQRNFNE_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2799682617188	2	525.733594	1049.45264	0.032694	1.7189E-05	-0.9707	-0.00051033	-0.93801	-0.00049314	525.732925769158	43.799	0.68405	43.83	43.486	44.17	0.030827					55	18	5	0	0	0	0.027866	1	4117	4117		34.173	0	1	3955800			13207	2489	9252	9270	14588	14588					-0.07011253641098847
ENQTKLEI	8	Unmodified	_ENQTKLEI_					0	0	0			REV__ENSG00000168944|ENST00000306467|CEP120	REV__ENSG00000168944|ENST00000306467|CEP120	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2816467285156	2	487.761289	973.508025	-0.25454	-0.00012415	0.43848	0.00021387	0.18394	8.972E-05	487.76146469339477	57.245	0.45642	57.245	57.003	57.459	0					17	11	2	0	0	0	0.027866	1	6459	6459		44.117	5.3107	1	97830	+		13208	26305	9253	9271	14589	14589					0.02021159826665553
ENQYPDIN	8	Unmodified	_ENQYPDIN_					0	0	0		ENSG00000097096|ENST00000341460|SYDE2	ENSG00000097096|ENST00000341460|SYDE2	ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2957458496094	2	496.719621	991.42469	-0.6311	-0.00031348	1.2509	0.00062137	0.61985	0.00030789	496.72067692661255	40.867	0.42354	40.732	40.524	40.947	-0.13553					16	10	2	0	0	0	0.027866	1	3594	3594		25.574	0	1	152570			13209	2059	9254	9272	14590	14590					-0.07136576621189761
ENRAGNKR	8	Unmodified	_ENRAGNKR_					0	0	0		ENSG00000117899|ENST00000261758|MESD	ENSG00000117899|ENST00000261758|MESD	ENSG00000117899|ENST00000261758|MESD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.27197265625	2	472.754664	943.494775	0.45061	0.00021303	-1.6727	-0.00079078	-1.2221	-0.00057775	472.75282847921466	41.283	0.34789	41.306	41.182	41.53	0.023006					14	9	2	0	0	0	0.027866	1	3655	3655		17.365	5.8539	1	68521			13210	3663	9255	9273	14591	14591					0.020767665579455752
ENRAPRVTV	9	Unmodified	_ENRAPRVTV_					0	0	0		ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7670288085938	2	521.293622	1040.57269	-0.63785	-0.00033251	-3.3669	-0.0017551	-4.0047	-0.0020876	521.2919539113194	47.923	0.11215	47.825	47.743	47.855	-0.097553					4	2	2	0	0	0	0.024319	1	4711	4711		56.721	5.3856	1	52950			13211	6789	9256	9274	14592	14592					0.054027794233206805
ENRATRCKV	9	Unmodified	_ENRATRCKV_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.8115844726562	2	538.785107	1075.55566	-0.59874	-0.00032259	-2.7548	-0.0014842	-3.3535	-0.0018068	538.7835057493455	19.293	0.63838	19.175	18.953	19.591	-0.11872					36	12	4	0	0	0	0.024381	1	391	391		37.159	0	1	285990			13212	7690	9257	9275	14593	14593					0.020905355458808117
ENRDWTFNH	9	Unmodified	_ENRDWTFNH_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2;PLXNA2|p.S161Rfs*19|2|0.04|ENSG00000076356|chr1:208217440-208217441|-/TCTTCTACAT|frameshift_variant;nc|ENSG00000076356|O75051-2|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2;nc|ENSG00000076356|O75051-2|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.7554931640625	3	406.847738	1217.52138	-0.74031	-0.00030119	0.5968	0.00024281	-0.1435	-5.8384E-05	406.8480645815107	38.66	0.40781	38.48	38.237	38.645	-0.17929					16	10	2	0	0	0	0.024541	1	3233	3233		16.717	3.2094	1	111790			13213	1582;18083	9258	9276	14594	14594					-0.07867589341390158
ENREAAGRL	9	Unmodified	_ENREAAGRL_					0	0	0		ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.280517578125	2	508.267604	1014.52066	-0.57721	-0.00029338	-4.2586	-0.0021645	-4.8358	-0.0024579	508.26440401941005	48.69	0.7095	48.537	48.261	48.97	-0.15276					30	19	3	0	0	0	0.024447	1	4925	4925		32.812	10.853	1	137100			13214	5515	9259	9277	14595	14595					0.01397616009558078
ENRESVIP	8	Unmodified	_ENRESVIP_					0	0	0			REV__ENSG00000163710|ENST00000295992|PCOLCE2	REV__ENSG00000163710|ENST00000295992|PCOLCE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7550354003906	2	472.245806	942.47706	0.4408	0.00020817	-0.54629	-0.00025799	-0.10549	-4.9817E-05	472.2455151734292	39.168	0.79813	39.168	38.935	39.733	0					39	22	3	0	0	0	0.027866	1	3415	3415		45.952	0	1	1105100	+		13215	25622	9260	9278	14596	14596					0.003520065124348548
ENRESVIP	8	Unmodified	_ENRESVIP_					0	0	0			REV__ENSG00000163710|ENST00000295992|PCOLCE2	REV__ENSG00000163710|ENST00000295992|PCOLCE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.245806	942.47706	-0.42186	-0.00019922	0.35289	0.00016665	-0.068962	-3.2567E-05	472.2458556398521	39.226	0.67845	39.249	38.956	39.635	0.023727	0.095416	0.0004002	NaN	29.15	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106600	+		13216	25622	9260	9278							0.003520065124348548
ENRGYTNQT	9	Unmodified	_ENRGYTNQT_					0	0	0			REV__ENSG00000162745|ENST00000294794|OLFML2B	REV__ENSG00000162745|ENST00000294794|OLFML2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	541.746702	1081.47885	-0.75994	-0.00041169	-0.87314	-0.00047302	-1.6331	-0.00088471	541.7460167472897	52.878	0.87885	52.973	52.677	53.556	0.095669					35	23	2	0	0	0	0.024473	1	5594	5594		20.837	3.3691	1	1495200	+		13217	25485	9261	9279	14597	14597					-0.058629844696270084
ENRIFVLKV	9	Unmodified	_ENRIFVLKV_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8138427734375	2	559.340041	1116.66553	-0.28981	-0.0001621	-0.29108	-0.00016281	-0.58089	-0.00032491	559.3396994822555	76.187	1.1408	76.187	75.659	76.799	0					63	28	3	0	0	0	0.024288	1	9432	9432		44.377	1.981	1	604600	+		13218	23325	9262	9280	14598	14598					0.11186284156724469
ENRIPQPPP	9	Unmodified	_ENRIPQPPP_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.7591552734375	2	524.282723	1046.55089	-0.61652	-0.00032323	3.6077	0.0018914	2.9912	0.0015682	524.2844922269841	46.971	0.80517	46.971	46.447	47.252	0					48	21	4	0	0	0	0.024263	1	4601	4601		51.335	8.9393	1	542910			13219	9685	9263	9281	14599	14599					0.02947974674748366
ENRKATGH	8	Unmodified	_ENRKATGH_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.S1391C|1|0.19|ENSG00000171456|chr20:32436883-32436883|A/T|missense_variant	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.767333984375	2	456.73594	911.457327	0.062658	2.8618E-05	-3.4476	-0.0015746	-3.3849	-0.001546	456.7341715487227	22.688	0.6474	22.688	22.432	23.079	0					22	13	2	0	0	0	0.027866	1	854	854		21.96	0	1	87831			13220	8152	9264	9282	14600	14600					-0.0019432470767242194
ENRKEMEDWI	10	Unmodified	_ENRKEMEDWI_					0	0	0		nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH;nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;ENST00000498255.6_1_13:42728006-42769963:+|nuORF	nc|ENSG00000102780|Q86XP1-2|DGKH	nc|ENSG00000102780|Q86XP1-2|DGKH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7789611816406	3	450.543326	1348.60815	-0.077815	-3.5059E-05	2.807	0.0012647	2.7292	0.0012296	450.54451817750237	54.113	0.4467	53.868	53.657	54.103	-0.2453					30	14	3	0	0	0	0.03519	1	5759	5759		20.837	0	1	727740			13221	2426	9265	9283	14601	14601					-0.05220970901837063
ENRKPLLGF	9	Unmodified	_ENRKPLLGF_					0	0	0		ENSG00000134253|ENST00000256649|TRIM45;nc|ENSG00000134253|Q9H8W5-2|TRIM45;TRIM45|p.R40Gfs*22|1|0.06|ENSG00000134253|chr1:117121085-117121085|G/-|frameshift_variant	ENSG00000134253|ENST00000256649|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.782470703125	2	537.308741	1072.60293	-1.7557	-0.00094338	2.9216	0.0015698	1.1659	0.00062645	537.3100391448581	49.278	1.4976	49.352	48.772	50.269	0.074196					81	41	3	0	0	0	0.024487	1	5138	5138		11.511	1.2458	1	509090			13222	4771	9266	9284	14602	14602					0.06953138088510968
ENRLHWSFRKT	11	Unmodified	_ENRLHWSFRKT_					0	0	0		ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.31378173828125	3	491.928503	1472.76368	-0.06644	-3.2684E-05	3.7994	0.0018691	3.733	0.0018364	492.26447735831215	22.061	0.28268	21.872	21.676	21.959	-0.18894					6	5	2	0	0	0	0.024812	1	745	745		18.966	0.43528	1	18675			13223	12453	9267	9285	14603	14603					0.046208607345761266
ENRLHWSFRKT	11	Unmodified	_ENRLHWSFRKT_					0	0	0		ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	491.928503	1472.76368	-0.40109	-0.00019731	6.2863	0.0030924	5.8852	0.0028951	491.93105570931783	21.965	0.28857	21.965	21.771	22.06	0	0.046484	0.0013617	NaN	18.966	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13080			13224	12453	9267	9285							0.046208607345761266
ENRLILLL	8	Unmodified	_ENRLILLL_					0	0	0		ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.26324462890625	2	492.316035	982.617516	-0.075274	-3.7059E-05	-0.17586	-8.658E-05	-0.25114	-0.00012364	492.31610554226415	71.093	0.4613	71.104	70.896	71.358	0.010735					22	11	3	0	0	0	0.027866	1	8518	8518		45.952	0	1	293000			13225	15903	9268	9286	14604	14604					0.1255121023667698
ENRLMFKILD	10	Unmodified	_ENRLMFKILD_					0	0	0			REV__ENSG00000268043|ENST00000698835|NBPF12;REV__nc|ENSG00000269713|P0DPF3-2|NBPF9;REV__nc|ENSG00000219481|Q3BBV0|NBPF1	REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7561950683594	3	426.900674	1277.68019	0.19976	8.5278E-05	3.7178	0.0015871	3.9175	0.0016724	426.9019015200093	41.703	0.51295	41.58	41.307	41.82	-0.12299					31	13	4	0	0	0	0.03519	1	3666	3666		11.932	0	1	217520	+		13226	29130;29159;37133	9269	9287	14605	14605					0.05245988242540989
ENRNLHSPEY	10	Unmodified	_ENRNLHSPEY_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.2405090332031	3	420.198548	1257.57381	-0.10428	-4.3818E-05	-3.0938	-0.0013	-3.198	-0.0013438	420.5304491517473	24.004	0.48304	23.824	23.519	24.002	-0.17989					13	10	2	0	0	0	0.03519	1	975	975		13.508	0	1	40881			13227	3341	9270	9288	14606	14606					-0.044670509984371165
ENRQVLLN	8	Unmodified	_ENRQVLLN_					0	0	0			REV__ENSG00000163673|ENST00000636136|DCLK3	REV__ENSG00000163673|ENST00000636136|DCLK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2976379394531	2	493.274898	984.535243	-0.56178	-0.00027711	0.58682	0.00028947	0.025039	1.2351E-05	493.2749816105471	47.454	1.0317	47.357	47.008	48.04	-0.096649					52	27	3	0	0	0	0.027866	1	4651	4651		42.396	6.7778	1	1898800	+		13228	25615	9271	9289	14607	14607					0.042356881577120475
ENRQVLLN	8	Unmodified	_ENRQVLLN_					0	0	0			REV__ENSG00000163673|ENST00000636136|DCLK3	REV__ENSG00000163673|ENST00000636136|DCLK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2973327636719	2	493.274898	984.535243	-0.1936	-9.5499E-05	0.10555	5.2066E-05	-0.08805	-4.3433E-05	493.27480478276965	47.835	0.91893	47.559	47.268	48.187	-0.27598					52	24	3	0	0	0	0.027866	1	4680	4680		34.173	15.069	1	2457900	+		13229	25615	9271	9289	14608	14608					0.042356881577120475
ENRRRKTAGVL	11	Unmodified	_ENRRRKTAGVL_					0	0	0		nc|ENSG00000163312|Q8TDG4-2|HELQ;HELQ|p.K1025Sfs*15|1|0.09|ENSG00000163312|chr4:83416856-83416857|-/ATTTCTATAGA|frameshift_variant;ENSG00000163312|ENST00000295488|HELQ;nc|ENSG00000163312|Q8TDG4-5|HELQ;ENST00000440639.2_1_4:84376438-84376846:-|nuORF	nc|ENSG00000163312|Q8TDG4-2|HELQ	nc|ENSG00000163312|Q8TDG4-2|HELQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.9144287109375	3	433.924982	1298.75312	0.015634	6.7839E-06	-0.91318	-0.00039625	-0.89754	-0.00038947	433.9244007837947	41.632	0.14283	41.497	41.372	41.515	-0.13553					5	3	2	0	0	0	0.024768	1	3686	3686		36.528	0	1	82566			13230	18444	9272	9290	14609	14609					0.11568878080174727
ENRSQIPSP	9	Unmodified	_ENRSQIPSP_					0	0	0		ENST00000469230.5_1_6:26383324-26383498:+|nuORF;ENST00000467485.5_1_6:26383333-26388250:+|nuORF;ENST00000356709.8_1_6:26383333-26385267:+|nuORF	ENST00000469230.5_1_6:26383324-26383498:+|nuORF	ENST00000469230.5_1_6:26383324-26383498:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3034057617188	2	514.261988	1026.50942	-0.1571	-8.0792E-05	3.5744	0.0018382	3.4173	0.0017574	514.2639918203614	53.857	0.38834	53.857	53.655	54.043	0					18	10	2	0	0	0	0.024374	1	5819	5819		32.812	9.7699	1	268150			13231	12676	9273	9291	14610	14610					-0.0027720608457002527
ENRSTDTVIK	10	Unmodified	_ENRSTDTVIK_					0	0	0			REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	REV__ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.3058471679688	2	581.806759	1161.59897	-1.1713	-0.00068145	4.3001	0.0025018	3.1288	0.0018204	581.8091597121543	63.096	0.4457	62.857	62.615	63.06	-0.23926					14	10	2	0	0	0	0.03519	1	7299	7299		78.264	4.0988	1	580070	+		13232	27210	9274	9292	14611	14611					0.02463003804109576
ENRTFQYL	8	Unmodified	_ENRTFQYL_					0	0	0			REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7850952148438	2	535.766906	1069.51926	0.17776	9.5237E-05	2.6957	0.0014443	2.8734	0.0015395	535.7684594648748	55.676	0.28596	55.676	55.536	55.822	0					10	7	2	0	0	0	0.027866	1	6161	6161		24.203	8.5609	1	171110	+		13233	25064	9275	9293	14612	14612					-0.012720180792030078
ENRTKTMS	8	Oxidation (M)	_ENRTKTM(Oxidation (M))S_		ENRTKTM(1)S		ENRTKTM(69)S	0	0	1			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.266845703125	2	491.734748	981.454944	-0.21929	-0.00010783	-0.31694	-0.00015585	-0.53623	-0.00026368	491.7349057725975	37.076	0.30717	37.109	36.957	37.264	0.032269					9	7	2	0	0	0	0.027866	1	2932	2932		68.787	10.005	1	40944	+		13234	26525	9276	9294	14613	14613		784			-0.036525412276319
ENRVGLNLL	9	Unmodified	_ENRVGLNLL_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7530517578125	2	514.298373	1026.58219	-1.2438	-0.0006397	-0.21476	-0.00011045	-1.4586	-0.00075015	514.2984523849643	50.902	0.72895	50.989	50.716	51.445	0.087006					35	19	3	0	0	0	0.024323	1	5270	5270		44.117	3.3386	1	765490			13235	3422	9277	9295	14614	14614					0.0699654770885445
ENRVLDGKL	9	Unmodified	_ENRVLDGKL_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.306396484375	2	522.29583	1042.57711	-0.92554	-0.00048341	4.2594	0.0022247	3.3339	0.0017413	522.2981952224909	52.855	0.68285	52.855	52.513	53.196	0					39	17	3	0	0	0	0.024405	1	5725	5725		44.117	3.3386	1	2678400			13236	1533	9278	9296	14615	14615					0.057522438462456194
ENRVMVCD	8	Unmodified	_ENRVMVCD_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2625732421875	2	483.212595	964.410636	-0.66812	-0.00032284	3.0358	0.0014669	2.3676	0.0011441	483.21394811286984	35.501	0.28226	35.545	35.459	35.741	0.04406					11	6	2	0	0	0	0.027866	1	2704	2704		30.504	6.3009	1	47953	+		13237	26473	9279	9297	14616	14616					-0.07299268645476786
ENRYGKST	8	Unmodified	_ENRYGKST_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.7693786621094	2	477.735606	953.456658	-0.25531	-0.00012197	0.24948	0.00011918	-0.0058351	-2.7876E-06	477.7355314493577	25.611	0.62496	25.44	25.2	25.825	-0.17151					30	14	4	0	0	0	0.027866	1	1189	1189		9.7057	0	1	273700			13238	6479	9280	9298	14617	14617					-0.02193164147377047
ENRYLVVP	8	Unmodified	_ENRYLVVP_					0	0	0		FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB	FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant	FANCB|p.I418Nfs*18|1|0.11|ENSG00000181544|chrX:14853112-14853113|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7508544921875	2	495.274367	988.53418	-0.22257	-0.00011024	2.9532	0.0014626	2.7306	0.0013524	495.27559480830433	44.995	0.92569	44.995	44.519	45.445	0					62	26	3	0	0	0	0.027866	1	4406	4406		30.504	3.7075	1	1004900			13239	9048	9281	9299	14618	14618					0.03945473788792242
ENSALEYF	8	Unmodified	_ENSALEYF_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.28717041015625	2	486.71909	971.423627	-1.5294	-0.00074437	2.6605	0.0012949	1.1311	0.00055055	486.7203513678724	28.856	0.60262	28.611	28.322	28.924	-0.24524					30	13	4	0	0	0	0.027866	1	1751	1751		31.955	7.7521	1	140450			13240	4121	9282	9300	14619	14619					-0.06322790990088833
ENSALLVHKTI	11	Unmodified	_ENSALLVHKTI_					0	0	0		ENSG00000213793|ENST00000638862|ZNF888	ENSG00000213793|ENST00000638862|ZNF888	ENSG00000213793|ENST00000638862|ZNF888	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	613.2574462890625	2	612.85097	1223.68739	-0.53491	-0.00032782	0.95882	0.00058762	0.42392	0.0002598	612.8514137593049	58.432	0.48505	58.523	58.297	58.782	0.091221					32	12	3	0	0	0	0.02473	1	6546	6546		17.167	2.3019	1	376300			13241	10522	9283	9301	14620	14620					0.08449044114627213
ENSCEELCF	9	Unmodified	_ENSCEELCF_					0	0	0		ENST00000396954.7_1_5:52405136-52405196:-|nuORF	ENST00000396954.7_1_5:52405136-52405196:-|nuORF	ENST00000396954.7_1_5:52405136-52405196:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7720336914062	2	537.19935	1072.38415	-0.05405	-2.9036E-05	-0.06322	-3.3962E-05	-0.11727	-6.2997E-05	537.19924948802	58.943	0.4751	58.702	58.502	58.977	-0.24165					16	11	2	0	0	0	0.024457	1	6462	6462		21.96	0	1	192330			13242	13569	9284	9302	14621	14621					-0.1491500232746148
ENSDEIIKV	9	Unmodified	_ENSDEIIKV_					0	0	0		ANAPC4|p.L167V|1|0.29|ENSG00000053900|chr4:25388866-25388866|C/G|missense_variant	ANAPC4|p.L167V|1|0.29|ENSG00000053900|chr4:25388866-25388866|C/G|missense_variant	ANAPC4|p.L167V|1|0.29|ENSG00000053900|chr4:25388866-25388866|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	523.771854	1045.52915	-0.752	-0.00039388	-0.20437	-0.00010704	-0.95637	-0.00050092	523.7719975001563	27.736	0.28668	27.568	27.402	27.689	-0.16816					12	6	2	0	0	0	0.023837	1	1542	1542		64.207	11.271	1	47812			13243	85	9285	9303	14622	14622					0.008211251355305649
ENSEDAIEI	9	Unmodified	_ENSEDAIEI_					0	0	0		nc|ENSG00000073417|O60658-5|PDE8A;nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000073417|O60658-2|PDE8A;ENSG00000073417|ENST00000394553|PDE8A	nc|ENSG00000073417|O60658-5|PDE8A	nc|ENSG00000073417|O60658-5|PDE8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.78240966796875	2	510.230019	1018.44548	-0.22191	-0.00011323	3.1435	0.0016039	2.9216	0.0014907	510.2299747501862	43.71	0.6524	43.741	43.45	44.102	0.030827					47	17	4	0	0	0	0.0242	1	4099	4099		60.118	0	1	1295400			13244	1506	9286	9304	14623	14623					-0.06300031032196785
ENSHLHTTI	9	Unmodified	_ENSHLHTTI_					0	0	0		nc|ENSG00000270751|B0L3A2|FBXW7-AS1	nc|ENSG00000270751|B0L3A2|FBXW7-AS1	nc|ENSG00000270751|B0L3A2|FBXW7-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.8012084960938	2	526.261988	1050.50942	-0.6651	-0.00035002	-0.33679	-0.00017724	-1.0019	-0.00052726	526.2616898525508	76.24	0.53869	76.011	75.74	76.279	-0.22844					21	13	2	0	0	0	0.0242	1	9378	9378		69.628	23.676	1	247750			13245	18792	9287	9305	14624	14624					-0.013812060845793894
ENSNIGEGYW	10	Unmodified	_ENSNIGEGYW_					0	0	0			REV__ENSG00000196859|ENST00000355612|KRT39	REV__ENSG00000196859|ENST00000355612|KRT39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.80224609375	2	584.74891	1167.48327	-0.63353	-0.00037045	-3.2644	-0.0019088	-3.8979	-0.0022793	584.7469305577648	53.341	0.30378	53.151	52.942	53.245	-0.18982					12	7	2	0	0	0	0.03519	1	5591	5591		12.812	0	1	211310	+	+	13246	19593	9288	9306	14625	14625					-0.09377520046700738
ENSNQMEY	8	Unmodified	_ENSNQMEY_					0	0	0			REV__ENSG00000166342|ENST00000327305|NETO1	REV__ENSG00000166342|ENST00000327305|NETO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.2908935546875	2	507.695289	1013.37602	-0.13248	-6.7261E-05	-0.0091713	-4.6562E-06	-0.14165	-7.1917E-05	507.6951483605557	27.696	0.64148	27.454	27.163	27.804	-0.24217					33	14	3	0	0	0	0.027866	1	1544	1544		42.396	11.892	1	336130	+		13247	26002	9289	9307	14626	14626					-0.13012813252589694
ENSPEPLSL	9	Unmodified	_ENSPEPLSL_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3296203613281	2	493.245472	984.476391	-0.082541	-4.0713E-05	1.7763	0.00087614	1.6937	0.00083543	493.24606892146977	24.057	0.98267	23.877	23.395	24.378	-0.17989					40	22	2	0	0	0	0.024209	1	1047	1047		47.657	0	1	184810			13248	3805	9290	9308	14627	14627					-0.0164683292726977
ENSRKLET	8	Unmodified	_ENSRKLET_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7923889160156	2	488.756538	975.498523	-0.95227	-0.00046543	0.40304	0.00019699	-0.54924	-0.00026844	488.7565621275233	36.283	0.47973	36.283	35.994	36.474	0					28	13	3	0	0	0	0.027866	1	2856	2856		32.812	12.816	1	246590	+		13249	28289	9291	9309	14628	14628					0.009793915411478338
ENSRLRLWTK	10	Unmodified	_ENSRLRLWTK_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77191162109375	3	434.914083	1301.72042	-0.45718	-0.00019884	-3.8382	-0.0016693	-4.2954	-0.0018681	434.9139876425743	25.466	0.4599	25.466	25.363	25.823	0					11	10	2	0	0	0	0.03519	1	1249	1249		19.263	7.6268	1	25846			13250	5170	9292	9310	14629	14629					0.08162670957312912
ENSRRNQET	9	Unmodified	_ENSRRNQET_					0	0	0		ENST00000475622.5_1_5:1483549-1494822:-|nuORF	ENST00000475622.5_1_5:1483549-1494822:-|nuORF	ENST00000475622.5_1_5:1483549-1494822:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.2747192382812	2	567.268333	1132.52211	-0.78389	-0.00044468	1.8029	0.0010227	1.019	0.00057804	567.2685158312465	60.328	0.33569	60.328	60.066	60.401	0					12	8	2	0	0	0	0.024447	1	6935	6935		19.104	0	1	102400			13251	15064	9293	9311	14630	14630					-0.0388479469233971
ENSTTFRDKT	10	Unmodified	_ENSTTFRDKT_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.8879089355469	3	400.194803	1197.56258	0.58132	0.00023264	3.8211	0.0015292	4.4024	0.0017618	400.1962501511544	22.868	0.55586	22.674	22.43	22.986	-0.19353					26	11	3	0	0	0	0.03519	1	839	839		21.032	1.7696	1	122450			13252	1900	9294	9312	14631	14631					-0.02829873092582602
ENSTTKGKCLD	11	Unmodified	_ENSTTKGKCLD_					0	0	0			REV__ENST00000262225.7_1_12:124082408-124082543:+|nuORF	REV__ENST00000262225.7_1_12:124082408-124082543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	598.81787109375	2	598.284802	1194.55505	-0.12229	-7.3163E-05	1.5691	0.00093879	1.4468	0.00086563	598.2857183714847	73.976	1.2918	73.976	73.784	75.076	0					46	30	3	0	0	0	0.02474	1	9068	9068		20.03	0	1	1338000	+		13253	29652	9295	9313	14632	14632					-0.03444348684502074
ENSYEIELY	9	Unmodified	_ENSYEIELY_					0	0	0		COL24A1|p.T467I|1|0.15|ENSG00000171502|chr1:86124936-86124936|G/A|missense_variant	COL24A1|p.T467I|1|0.15|ENSG00000171502|chr1:86124936-86124936|G/A|missense_variant	COL24A1|p.T467I|1|0.15|ENSG00000171502|chr1:86124936-86124936|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	580.2594604492188	2	580.261319	1158.50808	-0.9412	-0.00054614	-2.2343	-0.0012965	-3.1755	-0.0018426	580.2600676196939	42.712	1.2742	42.486	42.035	43.31	-0.22597					59	33	2	0	0	0	0.31037	1	3864	3864		74.255	10.721	1	2721500			13254	471	9296	9314	14633	14633					-0.06482884963998004
ENSYRRET	8	Unmodified	_ENSYRRET_					0	0	0		ENST00000593612.1_1_19:52793994-52794033:+|nuORF;ENST00000376943.7_1_X:47835860-47835932:-|nuORF;ENST00000575898.5_2_17:5009371-5009449:-|nuORF	ENST00000593612.1_1_19:52793994-52794033:+|nuORF	ENST00000593612.1_1_19:52793994-52794033:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.3009643554688	2	527.749244	1053.48394	0.076259	4.0245E-05	-0.81766	-0.00043152	-0.7414	-0.00039127	527.748641372271	23.205	0.37289	23.003	22.78	23.153	-0.20193					12	7	2	0	0	0	0.027866	1	890	890		35.618	4.0885	1	36732			13255	13193	9297	9315	14634	14634					-0.040666806070021266
ENTAKTTLG	9	Unmodified	_ENTAKTTLG_					0	0	0		nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-4|SLC13A3	nc|ENSG00000158296|Q8WWT9-5|SLC13A3	nc|ENSG00000158296|Q8WWT9-5|SLC13A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.7816162109375	2	467.745639	933.476725	-0.41941	-0.00019618	-3.7021	-0.0017316	-4.1215	-0.0019278	467.7437067251321	29.264	0.38807	29.092	28.937	29.325	-0.17258					14	8	2	0	0	0	0.023274	1	1799	1799		67.494	26.716	1	116770			13256	18416	9298	9316	14635	14635					0.007325867925715102
ENTFDILNA	9	Unmodified	_ENTFDILNA_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7697143554688	2	518.750921	1035.48729	-0.322	-0.00016704	-2.1117	-0.0010954	-2.4337	-0.0012625	518.7499274269492	66.575	0.6503	66.33	65.772	66.422	-0.24517					26	16	2	0	0	0	0.024438	1	7614	7614		29.17	0	1	199620	+		13257	36770	9299	9317	14636	14636					-0.029034305530103666
ENTFSPYQF	9	Unmodified	_ENTFSPYQF_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.766845703125	2	566.750921	1131.48729	0.39835	0.00022577	-1.9187	-0.0010874	-1.5204	-0.00086167	566.7496375418373	40.89	0.4325	40.767	40.653	41.086	-0.12317					15	11	2	0	0	0	0.024397	1	3637	3637		47.657	5.2612	1	262060			13258	7118	9300	9318	14637	14637					-0.07319430553002348
ENTGSIKVF	9	Unmodified	_ENTGSIKVF_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7352294921875	2	497.763832	993.513111	-0.53093	-0.00026428	2.4241	0.0012066	1.8931	0.00094233	497.7643827843056	31.338	0.45068	31.186	30.928	31.379	-0.15231					16	11	2	0	0	0	0.024294	1	2021	2021		37.159	14.117	1	146430			13259	4823	9301	9319	14638	14638					0.016094636892944436
ENTIHYHG	8	Unmodified	_ENTIHYHG_					0	0	0		PARPBP|p.H385Y|1|0.24|ENSG00000185480|chr12:102178739-102178739|C/T|missense_variant	PARPBP|p.H385Y|1|0.24|ENSG00000185480|chr12:102178739-102178739|C/T|missense_variant	PARPBP|p.H385Y|1|0.24|ENSG00000185480|chr12:102178739-102178739|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2716979980469	2	485.722498	969.430444	-0.77484	-0.00037636	0.70319	0.00034156	-0.071645	-3.48E-05	485.72252914384524	32.776	0.5644	32.776	32.531	33.096	0					22	14	2	0	0	0	0.027866	1	2313	2313		40.573	9.0428	1	125970			13260	18943	9302	9320	14639	14639					-0.05549433318844876
ENTKEEKPD	9	Unmodified	_ENTKEEKPD_					0	0	0		nc|ENSG00000232150|Q8IZP2|ST13P4;nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000232150|Q8IZP2|ST13P4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8275756835938	2	545.256568	1088.49858	-0.46501	-0.00025355	0.11685	6.3714E-05	-0.34816	-0.00018983	545.2564746850069	61.426	0.46478	61.426	61.255	61.72	0					17	11	2	0	0	0	0.024447	1	7133	7133		19.104	2.6304	1	99372			13261	2193	9303	9321	14640	14640					-0.042126532495103675
ENTLFDMV	8	Unmodified	_ENTLFDMV_					0	0	0		ENSG00000165185|ENST00000337530|KIAA1958;nc|ENSG00000165185|Q8N8K9-2|KIAA1958;nc|ENSG00000165185|Q8N8K9-3|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	ENSG00000165185|ENST00000337530|KIAA1958	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2897644042969	2	484.723318	967.432083	-0.37929	-0.00018385	-1.8519	-0.00089765	-2.2312	-0.0010815	484.7222943862289	34.919	0.91288	34.706	34.401	35.314	-0.21246					41	22	3	0	0	0	0.027866	1	2561	2561		38.806	0	1	148250			13262	7375	9304	9322	14641	14641					-0.05293560345114656
ENTLKSQH	8	Unmodified	_ENTLKSQH_					0	0	0			REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.29052734375	2	478.743431	955.472308	0.017741	8.4933E-06	1.6633	0.00079632	1.6811	0.00080481	478.7440354301349	31.154	0.43784	30.913	30.711	31.149	-0.24109					15	10	2	0	0	0	0.027866	1	2051	2051		71.296	15.791	1	71042	+		13263	22044	9305	9323	14642	14642					-0.007208776303286868
ENTLKSQH	8	Unmodified	_ENTLKSQH_					0	0	0			REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2902526855469	2	478.743431	955.472308	-0.51133	-0.0002448	0.92429	0.0004425	0.41296	0.0001977	478.74353616595107	31.06	0.44734	30.875	30.576	31.023	-0.18503					15	10	2	0	0	0	0.027866	1	2033	2033		60.972	9.6365	1	71817	+		13264	22044	9305	9323	14643	14643					-0.007208776303286868
ENTLKSQH	8	Unmodified	_ENTLKSQH_					0	0	0			REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.743431	955.472308	-0.25608	-0.0001226	0.22053	0.00010558	-0.035547	-1.7018E-05	478.7434007628417	31.151	0.62657	31.151	30.717	31.343	0	0.19887	3.4529E-05	NaN	71.296	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164910	+		13265	22044	9305	9323							-0.007208776303286868
ENTLKSQH	8	Unmodified	_ENTLKSQH_					0	0	0			REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.743431	955.472308	-0.079925	-3.8264E-05	0.029518	1.4132E-05	-0.050407	-2.4132E-05	478.74332988797806	31.047	0.59012	31.059	30.709	31.299	0.011799	0.10705	-0.00014837	NaN	71.296	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191260	+		13266	22044	9305	9323							-0.007208776303286868
ENTLKSQH	8	Unmodified	_ENTLKSQH_					0	0	0			REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.743431	955.472308	-0.43679	-0.00020911	0.084707	4.0553E-05	-0.35208	-0.00016856	478.74336689191824	30.696	0.87504	30.77	30.254	31.129	0.074314	-0.18222	-9.5523E-05	NaN	71.296	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219180	+		13267	22044	9305	9323							-0.007208776303286868
ENTLYWYFHRW	11	Unmodified	_ENTLYWYFHRW_					0	0	0			REV__ENST00000477729.1_1_15:60696796-60696997:+|nuORF	REV__ENST00000477729.1_1_15:60696796-60696997:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2012023925781	4	404.442663	1613.74155	1.1016	0.00044552	0.9245	0.00037391	2.0261	0.00081943	404.69374061124694	21.217	0.68781	21.026	20.587	21.275	-0.19072					18	13	2	0	0	0	0.024882	1	586	586		8.4073	0	1	20676	+		13268	19456	9306	9324	14644	14644					-0.04077363733836137
ENTRTGANKQ	10	Unmodified	_ENTRTGANKQ_					0	0	0			REV__ENST00000392323.6_1_2:191850345-191850384:-|nuORF	REV__ENST00000392323.6_1_2:191850345-191850384:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.31787109375	2	559.781076	1117.5476	-1.1118	-0.00062239	1.9138	0.0010713	0.80198	0.00044893	559.7819260037869	65.003	0.60564	65.003	64.654	65.26	0					39	16	3	0	0	0	0.03519	1	7659	7659		30.318	1.1477	1	390810	+		13269	22202	9307	9325	14645	14645					-0.006473201699009223
ENTSLAER	8	Unmodified	_ENTSLAER_					0	0	0			REV__AGPS-MOB4|1|fusion	REV__AGPS-MOB4|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.27130126953125	2	460.227613	918.440674	-0.46112	-0.00021222	-1.4548	-0.00066955	-1.9159	-0.00088177	460.22669133071247	43.268	0.54561	43.268	43.002	43.548	0					23	14	2	0	0	0	0.027866	1	4073	4073		27.882	3.6795	1	472370	+		13270	19087	9308	9326	14646	14646					-0.021808703842793875
ENTTHVEEV	9	Unmodified	_ENTTHVEEV_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2745971679688	2	529.24346	1056.47237	-0.82293	-0.00043553	-0.68492	-0.00036249	-1.5079	-0.00079802	529.2429476484763	45.782	2.7987	45.782	44.417	47.216	0					183	79	3	0	0	0	0.024313	1	4684	4684		51.193	6.8155	1	1547000			13271	9117	9309	9327	14647	14647					-0.05360922420982206
ENTVLLLPG	9	Unmodified	_ENTVLLLPG_					0	0	0		nc|ENSG00000172752|A8TX70|COL6A5;ENSG00000172752|ENST00000373157|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7939758300781	2	478.276575	954.538597	-1.0247	-0.00049011	1.378	0.00065906	0.35325	0.00016895	478.2769045352429	65.147	0.72786	64.885	64.613	65.34	-0.2626					48	19	4	0	0	0	0.024354	1	7665	7665		38.806	0	1	1973800			13272	8301	9310	9328	14648	14648					0.059509382117198584
ENVALGYHV	9	Unmodified	_ENVALGYHV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.794921875	2	501.256174	1000.49779	-0.41858	-0.00020981	0.54994	0.00027566	0.13136	6.5846E-05	501.2559367967277	52.605	0.50845	52.347	52.135	52.644	-0.25838					26	12	3	0	0	0	0.024405	1	5463	5463		44.117	25.855	1	295990			13273	9828	9311	9329	14649	14649					-0.002434031079133092
ENVALGYHV	9	Unmodified	_ENVALGYHV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.256174	1000.49779	-0.14226	-7.1307E-05	-5.7819	-0.0028982	-5.9242	-0.0029695	501.2524989721495	52.224	0.14507	52.076	51.95	52.095	-0.14735	-0.1625	-0.0053645	NaN	40.778	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66780			13274	9828	9311	9329							-0.002434031079133092
ENVATLSVSSL	11	Unmodified	_ENVATLSVSSL_					0	0	0		ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.3212890625	2	560.298236	1118.58192	-0.15979	-8.9532E-05	-4.3514	-0.0024381	-4.5112	-0.0025276	560.7966139761303	67.375	0.24539	67.375	67.205	67.45	0					8	5	2	0	0	0	0.024753	1	8046	8046		38.754	3.6016	1	68834			13275	9071	9312	9330	14650	14650					0.027370831983489552
ENVDELSDDP	10	Unmodified	_ENVDELSDDP_					0	0	0			REV__FBN3|p.R2082L|1|0.56|ENSG00000142449|chr19:8089899-8089899|C/A|missense_variant	REV__FBN3|p.R2082L|1|0.56|ENSG00000142449|chr19:8089899-8089899|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7667846679688	2	566.735665	1131.45678	0.44785	0.00025381	0.7774	0.00044058	1.2252	0.00069439	566.736856323471	40.931	0.28749	40.807	40.618	40.906	-0.12317					13	7	3	0	0	0	0.03519	1	3625	3625		36.447	0	1	86591	+		13276	36026	9313	9331	14651	14651					-0.10369253728708827
ENVDSLDKL	9	Unmodified	_ENVDSLDKL_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.765869140625	2	516.764029	1031.5135	-0.28252	-0.000146	1.908	0.00098597	1.6254	0.00083997	516.7651613158827	24.992	1.0926	25.07	24.914	26.007	0.078363					57	25	4	0	0	0	0.10464	1	1085	1085		109.48	5.4215	1	5070700			13277	7933	9314	9332	14652	14652					-0.0009916138151311316
ENVEDNERDV	10	Unmodified	_ENVEDNERDV_					0	0	0			REV__ENSG00000069018|ENST00000513104|TRPC7	REV__ENSG00000069018|ENST00000513104|TRPC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.7373962402344	3	406.845951	1217.51602	-0.38941	-0.00015843	-0.52112	-0.00021202	-0.91053	-0.00037045	406.84536078340705	37.702	0.2288	37.482	37.35	37.579	-0.2195					9	5	2	0	0	0	0.03519	1	3054	3054		14.694	4.1318	1	32263	+		13278	20395	9315	9333	14653	14653					-0.08403357714519188
ENVELSLRVWQ	11	Unmodified	_ENVELSLRVWQ_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.2449951171875	3	458.245498	1371.71466	-0.34232	-0.00015687	-0.20723	-9.4963E-05	-0.54956	-0.00025183	458.24537728579907	26.769	1.0333	26.601	26.153	27.186	-0.16816					71	24	4	0	0	0	0.96481	1	1414	1414		44.639	11.6	1	2236800			13279	4380	9316	9334	14654	14654					0.04367527654994774
ENVERWLK	8	Unmodified	_ENVERWLK_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2826538085938	2	537.290548	1072.56654	-1.7395	-0.00093463	-3.1151	-0.0016737	-4.8546	-0.0026083	537.2887192382459	65.408	0.44972	65.195	64.93	65.379	-0.21327					18	10	2	0	0	0	0.027866	1	7439	7439		24.203	2.2429	1	554030			13280	2528	9317	9335	14655	14655					0.033162611917987306
ENVGNAAR	8	Unmodified	_ENVGNAAR_					0	0	0		ENSG00000117586|ENST00000281834|TNFSF4	ENSG00000117586|ENST00000281834|TNFSF4	ENSG00000117586|ENST00000281834|TNFSF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2208557128906	2	415.709391	829.404229	2.2114	0.0009193	-1.9836	-0.00082459	0.22783	9.471E-05	415.70854245458463	24.265	1.3073	24.084	23.759	25.067	-0.18089					59	29	4	0	0	0	0.027866	1	1108	1108		7.1934	0	1	257100			13281	3642	9318	9336	14656	14656					-0.017297024903427882
ENVHPMSPDTK	11	Unmodified	_ENVHPMSPDTK_					0	0	0		ENST00000520693.5_1_5:133622066-133644414:-|nuORF;ENST00000520515.5_1_5:133541561-133657575:-|nuORF;ENSG00000006837|ENST00000265334|CDKL3;ENST00000518409.1_1_5:133640182-133644414:-|nuORF;nc|ENSG00000273345|Q8IVW4-2|CDKL3	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.8847351074219	3	418.864289	1253.57104	1.7035	0.00071352	4.4493	0.0018636	6.1527	0.0025772	418.8661728872553	36.397	0.9841	36.199	35.91	36.894	-0.19829					37	24	3	0	0	0	0.024795	1	2923	2923		44.639	14.5	1	374560			13282	804	9319	9337	14657	14657					-0.04560642447609098
ENVHPMSPDTK	11	Unmodified	_ENVHPMSPDTK_					0	0	0		ENST00000520693.5_1_5:133622066-133644414:-|nuORF;ENST00000520515.5_1_5:133541561-133657575:-|nuORF;ENSG00000006837|ENST00000265334|CDKL3;ENST00000518409.1_1_5:133640182-133644414:-|nuORF;nc|ENSG00000273345|Q8IVW4-2|CDKL3	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	418.864289	1253.57104	-0.3099	-0.00012981	12.459	0.0052185	12.149	0.0050887	419.2042729811597	35.974	0.24088	36.012	35.892	36.133	0.038425	-0.21254	0.0079768	NaN	44.639	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72092			13283	804	9319	9337							-0.04560642447609098
ENVHPMSPDTK	11	Unmodified	_ENVHPMSPDTK_					0	0	0		ENST00000520693.5_1_5:133622066-133644414:-|nuORF;ENST00000520515.5_1_5:133541561-133657575:-|nuORF;ENSG00000006837|ENST00000265334|CDKL3;ENST00000518409.1_1_5:133640182-133644414:-|nuORF;nc|ENSG00000273345|Q8IVW4-2|CDKL3	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	418.864289	1253.57104	-0.13996	-5.8624E-05	6.9885	0.0029272	6.8485	0.0028686	418.8672364365644	36.613	0.89385	36.408	36.021	36.915	-0.20518	0.18316	0.001103	NaN	44.639	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487740			13284	804	9319	9337							-0.04560642447609098
ENVHPMSPDTK	11	Unmodified	_ENVHPMSPDTK_					0	0	0		ENST00000520693.5_1_5:133622066-133644414:-|nuORF;ENST00000520515.5_1_5:133541561-133657575:-|nuORF;ENSG00000006837|ENST00000265334|CDKL3;ENST00000518409.1_1_5:133640182-133644414:-|nuORF;nc|ENSG00000273345|Q8IVW4-2|CDKL3	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	418.864289	1253.57104	0.16372	6.8575E-05	6.4331	0.0026946	6.5968	0.0027632	418.8669922226125	36.497	0.74192	36.28	35.947	36.689	-0.21661	0.055353	0.00040514	NaN	44.639	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459940			13285	804	9319	9337							-0.04560642447609098
ENVIHRLL	8	Unmodified	_ENVIHRLL_					0	0	0			REV__HSPA9|p.K288N|1|0.23|ENSG00000113013|chr5:138567016-138567016|C/A|missense_variant	REV__HSPA9|p.K288N|1|0.23|ENSG00000113013|chr5:138567016-138567016|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.26837158203125	2	497.295633	992.576714	-0.57781	-0.00028734	0.49573	0.00024652	-0.082085	-4.082E-05	497.2956469581177	34.696	0.68536	34.746	34.441	35.127	0.050255					48	17	5	0	0	0	0.027866	1	2615	2615		44.117	0	1	1632000	+		13286	36136	9320	9338	14658	14658					0.0801286891704649
ENVIKTRW	8	Unmodified	_ENVIKTRW_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;ENST00000476585.5_1_2:61729332-61753650:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3084106445312	2	523.293091	1044.57163	-0.60708	-0.00031768	4.1323	0.0021624	3.5252	0.0018447	523.2950621131685	30.812	1.2897	30.823	30.334	31.624	0.011799					44	30	2	0	0	0	0.027866	1	2031	2031		31.955	0	1	351670			13287	1742	9321	9339	14659	14659					0.05112565054423612
ENVIRIAKV	9	Unmodified	_ENVIRIAKV_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8168334960938	2	521.324391	1040.63423	-0.30812	-0.00016063	0.37484	0.00019541	0.066718	3.4782E-05	521.324547727163	64.404	0.48635	64.404	64.168	64.654	0					21	12	3	0	0	0	0.024319	1	7615	7615		31.53	4.8369	1	593390			13288	8590	9322	9340	14660	14660					0.11553711122587629
ENVLAHPCI	9	Unmodified	_ENVLAHPCI_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2682800292969	2	498.252577	994.490601	-0.30608	-0.00015251	0.2143	0.00010677	-0.091784	-4.5732E-05	498.2531197075551	34.98	0.38303	34.98	34.746	35.129	0					13	9	2	0	0	0	0.024397	1	2676	2676		39.253	19.893	1	69832			13289	7240	9323	9341	14661	14661					-0.006864589799761234
ENVLAHPCI	9	Unmodified	_ENVLAHPCI_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.252577	994.490601	-0.66006	-0.00032887	0.1059	5.2766E-05	-0.55415	-0.00027611	498.2526020073575	34.82	0.23203	34.798	34.634	34.866	-0.021763	-0.090781	-6.335E-05	NaN	31.53	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56747			13290	7240	9323	9341							-0.006864589799761234
ENVLLVLRRLD	11	Unmodified	_ENVLLVLRRLD_					0	0	0			REV__ENST00000489665.1_1_7:2804466-2804526:+|nuORF	REV__ENST00000489665.1_1_7:2804466-2804526:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.27435302734375	3	447.273388	1338.79833	-1.0771	-0.00048174	0.093236	4.1702E-05	-0.98383	-0.00044004	447.27335468333325	106.34	0.65143	106.2	105.92	106.58	-0.13279					81	28	4	0	0	0	1.0723	1	13228	13228		18.966	0.43528	1	1107000	+		13291	33678	9324	9342	14662	14662					0.14248683822711428
ENVNLKEPL	9	Unmodified	_ENVNLKEPL_					0	0	0		SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2918090820312	2	528.290214	1054.56587	0.32488	0.00017163	-0.88967	-0.00047001	-0.5648	-0.00029838	528.2897676778916	54.497	1.0816	54.595	54.328	55.409	0.098015					70	30	3	0	0	0	0.42604	1	5891	5891		64.207	2.516	1	11205000			13292	37884	9325	9343	14663	14663					0.040774217520947786
ENVPVKQNP	9	Unmodified	_ENVPVKQNP_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.8036193847656	2	512.774731	1023.53491	-0.57174	-0.00029318	3.0859	0.0015824	2.5142	0.0012892	512.7749987383424	45.378	0.53399	45.378	45.079	45.613	0					52	15	5	0	0	0	0.024477	1	4397	4397		27.882	14.923	1	798360	+		13293	22197	9326	9344	14664	14664					0.02408268437852712
ENVPVKQNP	9	Unmodified	_ENVPVKQNP_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	512.774731	1023.53491	-0.19125	-9.8066E-05	0.072881	3.7372E-05	-0.11836	-6.0694E-05	512.7746254421378	45.581	0.66623	45.482	45.255	45.921	-0.098873	0.062773	-0.00036838	NaN	34.173	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546500	+		13294	22197	9326	9344							0.02408268437852712
ENVPVKQNP	9	Unmodified	_ENVPVKQNP_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	512.774731	1023.53491	-0.20895	-0.00010714	0.19949	0.00010229	-0.0094629	-4.8524E-06	512.7746344933465	45.733	0.60512	45.472	45.249	45.854	-0.26118	0.052636	-0.00023854	NaN	34.173	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2381200	+		13295	22197	9326	9344							0.02408268437852712
ENVPVKQNP	9	Unmodified	_ENVPVKQNP_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	512.774731	1023.53491	-0.72654	-0.00037255	0.7074	0.00036274	-0.019148	-9.8185E-06	512.7749057220951	45.674	0.70389	45.472	45.226	45.93	-0.20226	0.052682	0.00028235	NaN	34.173	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2586000	+		13296	22197	9326	9344							0.02408268437852712
ENVQGVNEL	9	Unmodified	_ENVQGVNEL_					0	0	0			REV__ENSG00000109501|ENST00000226760|WFS1	REV__ENSG00000109501|ENST00000226760|WFS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7846374511719	2	501.248546	1000.48254	0.29156	0.00014615	1.0251	0.00051382	1.3166	0.00065996	501.24936651268126	72.052	0.36595	71.79	71.679	72.045	-0.26199					13	8	2	0	0	0	0.024418	1	8466	8466		45.972	15.655	1	53449	+		13297	21797	9327	9345	14665	14665					-0.01768314695743811
ENVSFEKVL	9	Unmodified	_ENVSFEKVL_					0	0	0			REV__ENSG00000197943|ENST00000564138|PLCG2	REV__ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.271728515625	2	532.784764	1063.55498	0.21117	0.00011251	2.3739	0.0012648	2.5851	0.0013773	532.7847657001328	55.619	0.21512	55.619	55.464	55.679	0					8	5	2	0	0	0	0.024397	1	6133	6133		47.657	5.2612	1	202440	+		13298	28365	9328	9346	14666	14666					0.025740193778119647
ENVSKSFG	8	Unmodified	_ENVSKSFG_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2557678222656	2	434.213975	866.413397	0.021715	9.429E-06	-2.7902	-0.0012116	-2.7685	-0.0012021	434.2131901120928	102.96	0.16013	102.84	102.75	102.91	-0.12783					5	3	2	0	0	0	0.027866	1	12821	12821		50.025	9.4519	1	83772	+		13299	22092	9329	9347	14667	14667					-0.025153539246502987
ENVTLLLSLLE	11	Unmodified	_ENVTLLLSLLE_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.8985595703125	3	415.242983	1242.70712	-0.67487	-0.00028024	3.3731	0.0014007	2.6983	0.0011204	415.2443844647295	25.135	0.17296	25.1	24.948	25.121	-0.034395					5	3	2	0	0	0	0.024743	1	1147	1147		43.651	15.074	1	25092			13300	5282	9330	9348	14668	14668					0.09547375334750541
ENVVIFFI	8	Unmodified	_ENVVIFFI_					0	0	0			REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF	REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.29022216796875	2	490.776211	979.537869	-0.40689	-0.00019969	-3.3493	-0.0016438	-3.7562	-0.0018434	490.7744952315185	45.072	0.55109	45.116	44.858	45.409	0.04388					26	15	2	0	0	0	0.027866	1	4260	4260		27.882	14.923	1	341810	+		13301	20814	9331	9349	14669	14669					0.04728143562670084
ENVVLKTVN	9	Unmodified	_ENVVLKTVN_					0	0	0			REV__sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	REV__sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7643127441406	2	508.292756	1014.57096	-0.9139	-0.00046453	-2.8426	-0.0014449	-3.7565	-0.0019094	508.29189840116203	39.316	0.39116	39.34	39.17	39.562	0.023727					13	10	2	0	0	0	0.024261	1	3302	3302		64.207	23.429	1	93293	+		13302	37567	9332	9350	14670	14670					0.06425725614712974
ENVVLKTVN	9	Unmodified	_ENVVLKTVN_					0	0	0			REV__sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	REV__sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.292756	1014.57096	-1.1659	-0.00059264	2.1624	0.0010991	0.99648	0.0005065	508.29370602724686	39.725	0.35993	39.613	39.432	39.792	-0.11222	0.13657	0.002797	NaN	64.207	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55800	+		13303	37567	9332	9350							0.06425725614712974
ENWEPRVL	8	Unmodified	_ENWEPRVL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.307861328125	2	521.769448	1041.52434	-0.56506	-0.00029483	2.3731	0.0012382	1.8081	0.00094339	521.7700547020952	30.781	0.33699	30.856	30.708	31.045	0.074314					10	7	2	0	0	0	0.027866	1	1970	1970		34.173	0	1	16742			13304	4004	9333	9351	14671	14671					0.005242857834218739
ENWFFDIV	8	Unmodified	_ENWFFDIV_					0	0	0			REV__ENSG00000172893|ENST00000355527|DHCR7	REV__ENSG00000172893|ENST00000355527|DHCR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7730102539062	2	535.2531	1068.49165	-0.30328	-0.00016233	-2.3299	-0.0012471	-2.6332	-0.0014094	535.7536266540034	41.483	0.32071	41.483	41.258	41.579	0					10	8	2	0	0	0	0.027866	1	3752	3752		52.299	6.3472	1	261260	+		13305	26719	9334	9352	14672	14672					-0.039859213394493054
ENWFRGEHSTI	11	Unmodified	_ENWFRGEHSTI_					0	0	0			REV__ENST00000528812.5_1_8:11660824-11660866:+|nuORF	REV__ENST00000528812.5_1_8:11660824-11660866:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.267578125	3	459.217831	1374.63166	-1.1332	-0.00052037	3.6529	0.0016775	2.5198	0.0011571	459.2194165803691	48.663	0.57414	48.386	48.004	48.578	-0.27661					20	15	2	0	0	0	0.024735	1	4803	4803		16.53	0	1	150650	+		13306	34416	9335	9353	14673	14673					-0.04066789072976462
ENWKPNLT	8	Unmodified	_ENWKPNLT_					0	0	0			REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	REV__nc|ENSG00000049759|Q96PU5-3|NEDD4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.794677734375	2	501.256174	1000.49779	-0.45841	-0.00022978	0.72731	0.00036457	0.2689	0.00013479	501.2559668235951	52.437	0.52405	52.247	52.067	52.591	-0.18982					23	12	2	0	0	0	0.027866	1	5464	5464		30.504	1.3541	1	272590	+		13307	20150	9336	9354	14674	14674					-0.002434031079246779
ENWSKDITHS	10	Unmodified	_ENWSKDITHS_					0	0	0		ENSG00000151338|ENST00000684589|MIPOL1;nc|ENSG00000151338|Q8TD10-3|MIPOL1;ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENSG00000151338|ENST00000684589|MIPOL1	ENSG00000151338|ENST00000684589|MIPOL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	607.7883911132812	2	608.783284	1215.55202	-0.4392	-0.00026738	-2.8292	-0.0017224	-3.2684	-0.0019897	608.7820560610454	53.87	0.4591	53.625	53.49	53.949	-0.2453					27	14	3	0	0	0	0.03519	1	5647	5647		9.1829	0	1	701560			13308	6196	9337	9355	14675	14675					-0.04713855746990703
ENYALIKI	8	Unmodified	_ENYALIKI_					0	0	0			REV__DPP10|p.D432N|1|0.22|ENSG00000175497|chr2:115777280-115777280|G/A|missense_variant	REV__DPP10|p.D432N|1|0.22|ENSG00000175497|chr2:115777280-115777280|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2771301269531	2	482.279118	962.543683	-1.1827	-0.0005704	-3.1346	-0.0015118	-4.3174	-0.0020822	482.277530311532	24.698	0.8277	24.651	24.398	25.225	-0.047148					42	18	4	0	0	0	0.53523	1	1088	1088		82.305	2.854	1	1437500	+		13309	19703	9338	9356	14676	14676					0.06091242074330694
ENYAVVRF	8	Unmodified	_ENYAVVRF_					0	0	0			REV__ENSG00000187323|ENST00000442544|DCC	REV__ENSG00000187323|ENST00000442544|DCC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7690734863281	2	499.258717	996.50288	0.68354	0.00034126	-4.2802	-0.0021369	-3.5967	-0.0017957	499.25690006161875	19.796	0.29584	19.563	19.424	19.72	-0.23345					7	5	2	0	0	0	0.027866	1	432	432		38.806	0	1	22866	+		13310	27928	9339	9357	14677	14677					0.004489007547249457
ENYAVYTW	8	Unmodified	_ENYAVYTW_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2579956054688	2	523.234907	1044.45526	-1.0532	-0.00055107	2.0008	0.0010469	0.94757	0.0004958	523.2358994114771	24.05	0.43273	24.05	23.908	24.341	0					12	9	2	0	0	0	0.027866	1	1031	1031		24.203	7.7296	1	69087	+		13311	28266	9340	9358	14678	14678					-0.06518798236152179
ENYCLSTETL	10	Unmodified	_ENYCLSTETL_					0	0	0		ENST00000302418.4_1_10:32299749-32299908:-|nuORF	ENST00000302418.4_1_10:32299749-32299908:-|nuORF	ENST00000302418.4_1_10:32299749-32299908:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.8406982421875	2	586.760629	1171.5067	-0.62579	-0.00036719	-1.893	-0.0011107	-2.5188	-0.0014779	586.7594808218538	53.014	1.8703	52.825	51.847	53.717	-0.18982					86	49	2	0	0	0	0.03519	1	5533	5533		23.523	0	1	555080			13312	11956	9341	9359	14679	14679					-0.07218842324391517
ENYEPCSS	8	Unmodified	_ENYEPCSS_					0	0	0		ENST00000390401.2_1_3:119187859-119190300:+|nuORF;ENSG00000163389|ENST00000295588|POGLUT1	ENST00000390401.2_1_3:119187859-119190300:+|nuORF	ENST00000390401.2_1_3:119187859-119190300:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2480773925781	2	464.671282	927.328012	-0.8336	-0.00038735	4.4803	0.0020819	3.6467	0.0016945	464.6732497307793	33.027	0.49767	33.027	32.753	33.251	0					16	12	2	0	0	0	0.027866	1	2373	2373		24.203	9.5387	1	94127			13313	7070	9342	9360	14680	14680					-0.13855887172633174
ENYEPCSS	8	Unmodified	_ENYEPCSS_					0	0	0		ENST00000390401.2_1_3:119187859-119190300:+|nuORF;ENSG00000163389|ENST00000295588|POGLUT1	ENST00000390401.2_1_3:119187859-119190300:+|nuORF	ENST00000390401.2_1_3:119187859-119190300:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	464.671282	927.328012	-0.54365	-0.00025262	4.0457	0.0018799	3.5021	0.0016273	464.6730439300165	32.794	0.34115	32.801	32.664	33.005	0.0066223	-0.113	-0.00025317	NaN	24.203	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76781			13314	7070	9342	9360							-0.13855887172633174
ENYIKLQL	8	Unmodified	_ENYIKLQL_					0	0	0		CON__ENSEMBL:ENSBTAP00000018229	CON__ENSEMBL:ENSBTAP00000018229	CON__ENSEMBL:ENSBTAP00000018229	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.28216552734375	2	510.78985	1019.56515	-0.44425	-0.00022692	2.7164	0.0013875	2.2722	0.0011606	510.790743634761	56.272	0.50644	56.116	55.814	56.321	-0.15601					17	13	2	0	0	0	0.027866	1	6209	6209		27.882	0	1	293030		+	13315	485	9343	9361	14681	14681					0.056146271030456774
ENYKCIIDL	9	Unmodified	_ENYKCIIDL_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2958374023438	2	555.778625	1109.5427	-1.0529	-0.0005852	3.701	0.0020569	2.6481	0.0014717	555.7807033927332	30.364	0.98342	30.364	29.855	30.838	0					35	23	2	0	0	0	0.024466	1	1994	1994		24.519	0	1	115310	+		13316	23401	9344	9362	14682	14682					-0.007693403568737267
ENYSRALEGE	10	Unmodified	_ENYSRALEGE_					0	0	0		ENST00000460132.5_1_7:100853286-100853899:-|nuORF;ENSG00000106397|ENST00000223127|PLOD3	ENST00000460132.5_1_7:100853286-100853899:-|nuORF	ENST00000460132.5_1_7:100853286-100853899:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2857666015625	2	584.267467	1166.52038	-0.88727	-0.00051841	0.4146	0.00024224	-0.47267	-0.00027617	584.2678406479749	55.556	0.39281	55.334	55.199	55.592	-0.22188					17	10	2	0	0	0	0.03519	1	5970	5970		68.846	0	1	111880			13317	2786	9345	9363	14683	14683					-0.056218485009367214
ENYVPVQLL	9	Unmodified	_ENYVPVQLL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;ENST00000577865.2_1_17:16336966-16340200:+|nuORF;ENST00000493434.1_1_17:16338039-16340200:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7976684570312	2	537.795132	1073.57571	-0.45908	-0.00024689	3.7478	0.0020156	3.2887	0.0017687	537.7970207667825	77.615	3.0284	77.615	76.799	79.828	0					167	72	3	0	0	0	0.34489	1	9575	9575		69.628	11.398	1	2444300			13318	9648	9346	9364	14684	14684					0.0418660975747116
ENYYQLEEL	9	Unmodified	_ENYYQLEEL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;ENST00000484393.1_1_1:39751227-39753267:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.53912353515625	3	400.852154	1199.53463	0.097612	3.9128E-05	-2.1514	-0.00086238	-2.0537	-0.00082325	400.850264266071	25.87	0.16924	25.634	25.508	25.677	-0.23603					5	3	2	0	0	0	0.024181	1	1265	1265		46.457	8.9486	1	17481			13319	4256;18250	9347	9365	14685	14685					-0.05715196072651452
ENYYVNIRE	9	Unmodified	_ENYYVNIRE_					0	0	0			REV__ENSG00000137267|ENST00000333628|TUBB2A;REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF;REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF;REV__ENSG00000261456|ENST00000568584|TUBB8	REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073974609375	3	400.527894	1198.56185	-0.57515	-0.00023036	-2.0426	-0.0008181	-2.6177	-0.0010485	400.5272379921554	27.499	0.66341	27.342	27.061	27.724	-0.15664					20	15	2	0	0	0	0.024541	1	1531	1531		14.694	8.3728	1	59195	+		13320	23742;33688;31897;29113	9348	9366	14686	14686					-0.029486677416116436
ENYYVNIRE	9	Unmodified	_ENYYVNIRE_					0	0	0			REV__ENSG00000137267|ENST00000333628|TUBB2A;REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF;REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF;REV__ENSG00000261456|ENST00000568584|TUBB8	REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	400.527894	1198.56185	0.51906	0.0002079	-3.2909	-0.0013181	-2.7719	-0.0011102	400.5264892274942	27.556	1.0155	27.314	26.869	27.885	-0.24217	-0.0030358	-0.00054514	NaN	20.03	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160260	+		13321	23742;33688;31897;29113	9348	9366							-0.029486677416116436
ENYYVNIRE	9	Unmodified	_ENYYVNIRE_					0	0	0			REV__ENSG00000137267|ENST00000333628|TUBB2A;REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF;REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF;REV__ENSG00000261456|ENST00000568584|TUBB8	REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	400.527894	1198.56185	0.53752	0.00021529	-3.2244	-0.0012915	-2.6869	-0.0010762	400.526440444605	27.463	0.87795	27.295	26.851	27.729	-0.16816	-0.022024	-0.00046518	NaN	20.03	20	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73952	+		13322	23742;33688;31897;29113	9348	9366							-0.029486677416116436
EPAAGSITL	9	Unmodified	_EPAAGSITL_					0	0	0		ENST00000515090.5_1_4:176708501-176708585:-|nuORF	ENST00000515090.5_1_4:176708501-176708585:-|nuORF	ENST00000515090.5_1_4:176708501-176708585:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.26605224609375	2	429.732	857.449448	-0.42566	-0.00018292	3.7826	0.0016255	3.3569	0.0014426	429.73282347404404	48.759	0.49769	48.606	48.295	48.792	-0.15277					22	13	2	0	0	0	0.024354	1	4971	4971		38.806	0	1	81648			13323	15895	9349	9367	14687	14687					0.015021032521872257
EPAEELQL	8	Unmodified	_EPAEELQL_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2684326171875	2	464.73474	927.454927	0.046075	2.1413E-05	1.7687	0.00082198	1.8148	0.0008434	464.7354116275415	41.799	0.57825	41.799	41.542	42.12	0					28	16	2	0	0	0	0.027866	1	3842	3842		55.504	0	1	673310	+		13324	23266	9350	9368	14688	14688					-0.01170217955973385
EPAEGVFLDL	10	Unmodified	_EPAEGVFLDL_					0	0	0			REV__ENST00000435989.6_1_19:58400356-58400398:-|nuORF	REV__ENST00000435989.6_1_19:58400356-58400398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.275634765625	2	545.276772	1088.53899	-0.30267	-0.00016504	-4.3221	-0.0023568	-4.6248	-0.0025218	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.98754	1	9732	9732		47.657	7.0847	1	57394000	+		13325	32454	9351	9369	14689	14689					-0.0017368685910241766
EPAELLGST	9	Unmodified	_EPAELLGST_					0	0	0		ENST00000441363.1_1_6:73973084-74008823:+|nuORF	ENST00000441363.1_1_6:73973084-74008823:+|nuORF	ENST00000441363.1_1_6:73973084-74008823:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.7372741699219	2	458.73474	915.454927	0.055893	2.564E-05	1.7774	0.00081534	1.8333	0.00084098	458.73534164663306	21.414	0.82773	21.223	20.882	21.71	-0.19072					43	16	4	0	0	0	0.6504	1	661	661		49.442	7.0454	1	169020			13326	14358	9352	9370	14690	14690					-0.006182179559800716
EPAELLGST	9	Unmodified	_EPAELLGST_					0	0	0		ENST00000441363.1_1_6:73973084-74008823:+|nuORF	ENST00000441363.1_1_6:73973084-74008823:+|nuORF	ENST00000441363.1_1_6:73973084-74008823:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.73474	915.454927	0.34921	0.0001602	1.2563	0.00057629	1.6055	0.00073649	458.73518282093613	21.308	0.71902	21.13	20.726	21.445	-0.17721	-0.046597	-0.00021724	NaN	49.442	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208080			13327	14358	9352	9370							-0.006182179559800716
EPAEPALEPA	10	Unmodified	_EPAEPALEPA_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2532348632812	2	512.253297	1022.49204	-0.12497	-6.4016E-05	-0.58698	-0.00030068	-0.71195	-0.0003647	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	1.0142	1	5818	5818		44.117	0	1	54943000	+		13328	26262	9353	9371	14691	14691					-0.018305464102581936
EPAEPALEPA	10	Unmodified	_EPAEPALEPA_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2535400390625	2	512.253297	1022.49204	0.46489	0.00023814	-0.70196	-0.00035958	-0.23707	-0.00012144	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	1.0393	1	5757	5757		40.778	0.20554	1	42815000	+		13329	26262	9353	9371	14692	14692					-0.018305464102581936
EPAEVKKGL	9	Unmodified	_EPAEVKKGL_					0	0	0			REV__ENSG00000215817|ENST00000651890|ZC3H11B	REV__ENSG00000215817|ENST00000651890|ZC3H11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.77099609375	2	485.782025	969.549496	0.18346	8.9121E-05	-0.37266	-0.00018103	-0.1892	-9.191E-05	485.78171762569264	72.334	1.0942	72.334	71.978	73.072	0					73	26	4	0	0	0	0.62163	1	8831	8831		51.335	1.8939	1	4422200	+		13330	28813	9354	9372	14693	14693					0.06350340586004677
EPAGKKKT	8	Unmodified	_EPAGKKKT_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.7383117675781	2	429.75581	857.497067	-0.030657	-1.3175E-05	-3.0136	-0.0012951	-3.0443	-0.0013083	429.75389763617983	40.019	0.22826	39.788	39.623	39.851	-0.23021					8	5	2	0	0	0	0.027866	1	3406	3406		10.866	0	1	41342			13331	7930	9355	9373	14694	14694					0.06261802243045622
EPAGPMKGTPP	11	Unmodified	_EPAGPMKGTPP_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2553100585938	2	541.270967	1080.52738	2.9705	0.0016079	2.7581	0.0014929	5.7286	0.0031007	541.2727339189116	16.885	0.39975	16.885	16.752	17.151	0					17	10	2	0	0	0	0.024808	1	129	129		24.519	8.046	1	62117	+		13332	23437	9356	9374	14695	14695					-0.009662071540560646
EPAGSDLLQL	10	Unmodified	_EPAGSDLLQL_					0	0	0			REV__ENSG00000041880|ENST00000398755|PARP3	REV__ENSG00000041880|ENST00000398755|PARP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.809814453125	2	521.774396	1041.53424	-0.54182	-0.00028271	-1.539	-0.00080303	-2.0809	-0.0010857	522.2765629742682	53.636	0.24764	53.732	53.592	53.84	0.095669					10	6	2	0	0	0	0.03519	1	5734	5734		115.49	24.555	1	148310	+		13333	20096	9357	9375	14696	14696					0.015134289981688198
EPAGWEFV	8	Unmodified	_EPAGWEFV_					0	0	0		ENST00000368178.3_1_1:157716528-157737507:-|nuORF;nc|ENSG00000132704|Q96LA5-2|FCRL2;nc|ENSG00000132704|Q96LA5-4|FCRL2;nc|ENSG00000132704|Q96LA5-3|FCRL2	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.262939453125	2	467.718893	933.423233	-0.0017429	-8.1517E-07	-0.46202	-0.00021609	-0.46376	-0.00021691	467.71857398022405	47.148	0.4249	47.207	47.032	47.457	0.059097					17	11	2	0	0	0	0.027866	1	4634	4634		19.36	0	1	98478			13334	12883	9358	9376	14697	14697					-0.04614165919281277
EPAKTAARR	9	Unmodified	_EPAKTAARR_					0	0	0			REV__nc|ENSG00000181396|Q6PK18-2|OGFOD3	REV__nc|ENSG00000181396|Q6PK18-2|OGFOD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2771911621094	2	500.28834	998.562127	0.42058	0.00021041	2.7877	0.0013946	3.2082	0.001605	500.2891164440859	61.301	0.42099	61.301	61.108	61.529	0					14	10	2	0	0	0	0.024427	1	7069	7069		26.693	0	1	167720	+		13335	27402	9359	9377	14698	14698					0.06278796768879147
EPALGRCAI	9	Unmodified	_EPALGRCAI_					0	0	0			REV__nc|ENSG00000066405|P56856-2|CLDN18	REV__nc|ENSG00000066405|P56856-2|CLDN18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2686767578125	2	465.247295	928.480036	0.1762	8.1978E-05	-3.5341	-0.0016442	-3.3579	-0.0015623	465.2457329939545	66.229	0.27475	66.229	65.987	66.262	0					8	6	2	0	0	0	0.024381	1	7853	7853		45.952	5.3793	1	225280	+		13336	20334	9360	9378	14699	14699					0.012935583655803384
EPALMHIEID	10	Unmodified	_EPALMHIEID_					0	0	0			REV__ENST00000568170.1_1_16:66544905-66545152:-|nuORF	REV__ENST00000568170.1_1_16:66544905-66545152:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.2705688476562	2	584.289356	1166.56416	0.0035319	2.0637E-06	-2.2903	-0.0013382	-2.2868	-0.0013361	584.28872420819	84.737	0.50312	84.599	84.365	84.868	-0.13789					23	11	3	0	0	0	0.03519	1	10264	10264		66.429	9.9955	1	286210	+		13337	35336	9361	9379	14700	14700					-0.012459553281814806
EPALRKTL	8	Unmodified	_EPALRKTL_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1;ENST00000497973.5_1_1:46032543-46034819:+|nuORF;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENSG00000117448|ENST00000351829|AKR1A1;ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7817687988281	2	464.284734	926.554916	-0.34305	-0.00015927	0.68645	0.00031871	0.3434	0.00015944	464.2847361303061	45.588	0.78043	45.588	45.31	46.09	0					44	22	3	0	0	0	0.027866	1	4516	4516		29.15	0	1	951390			13338	3628;15578	9362	9380	14701	14701					0.0887006416847953
EPAPLVSL	8	Unmodified	_EPAPLVSL_					0	0	0			REV__ENST00000470779.1_1_1:155028301-155028614:+|nuORF	REV__ENST00000470779.1_1_1:155028301-155028614:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2374572753906	2	413.239461	824.46437	-0.82222	-0.00033977	-1.5829	-0.00065411	-2.4051	-0.00099388	413.23867503470103	89.937	1.1672	89.775	89.343	90.51	-0.1626					65	27	4	0	0	0	1.0574	1	10973	10973		26.796	0	1	1502100	+		13339	33161	9363	9381	14702	14702					0.04511595120197853
EPAPTTPKET	10	Unmodified	_EPAPTTPKET_					0	0	0		nc|ENSG00000116690|Q92954-6|PRG4;ENSG00000116690|ENST00000445192|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;nc|ENSG00000116690|Q92954-4|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7734985351562	2	535.771854	1069.52915	-0.38867	-0.00020824	2.9289	0.0015692	2.5403	0.001361	535.7733080742079	41.568	0.60627	41.432	41.099	41.705	-0.13554					45	15	4	0	0	0	0.85955	1	3685	3685		56.721	1.9447	1	3665900			13340	3566	9364	9382	14703	14703					-0.002828748644787993
EPAQVSLLY	9	Unmodified	_EPAQVSLLY_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2754211425781	2	510.274032	1018.53351	0.20219	0.00010317	-0.3911	-0.00019957	-0.18891	-9.6397E-05	510.27380347284304	76.758	1.4273	76.49	76.008	77.436	-0.26807					89	34	5	0	0	0	0.39228	1	9087	9087		66.429	8.9766	1	7648200			13341	1804	9365	9383	14704	14704					0.024986343491036678
EPARGSRAHG	10	Unmodified	_EPARGSRAHG_					0	0	0			REV__ENST00000566083.6_2_16:28493835-28503080:-|nuORF	REV__ENST00000566083.6_2_16:28493835-28503080:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7320556640625	2	519.265396	1036.51624	-0.68354	-0.00035494	-2.4938	-0.0012949	-3.1773	-0.0016499	519.2643849819924	56.449	0.77132	56.547	56.397	57.168	0.097893					27	21	2	0	0	0	0.03519	1	6288	6288		51.335	7.2187	1	179310	+		13342	35294	9366	9384	14705	14705					-0.0005584841333075019
EPARRLQS	8	Unmodified	_EPARRLQS_					0	0	0			REV__ENST00000395290.6_1_11:47489658-47490021:-|nuORF	REV__ENST00000395290.6_1_11:47489658-47490021:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.73541259765625	2	478.76724	955.519927	0.07202	3.4481E-05	-3.9775	-0.0019043	-3.9055	-0.0018698	478.76520999011507	59.941	0.60162	59.693	59.417	60.019	-0.24842					25	15	2	0	0	0	0.027866	1	6642	6642		17.365	5.1581	1	500250	+		13343	31692	9367	9385	14706	14706					0.04038821360506972
EPARTAPLL	9	Unmodified	_EPARTAPLL_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2715148925781	2	484.282192	966.549831	-0.58618	-0.00028388	-1.8492	-0.00089554	-2.4354	-0.0011794	484.2808605182178	32.493	0.55827	32.505	32.26	32.818	0.011795					32	14	4	0	0	0	0.024506	1	2293	2293		10.866	0	1	456900	+		13344	23310	9368	9386	14707	14707					0.06521760305838598
EPARTAPLL	9	Unmodified	_EPARTAPLL_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.282192	966.549831	0.39379	0.00019071	-0.45855	-0.00022207	-0.06476	-3.1362E-05	484.2818342998441	32.548	0.584	32.356	32.073	32.657	-0.19261	-0.041516	-0.0002659	NaN	10.866	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214860	+		13345	23310	9368	9386							0.06521760305838598
EPASDQLII	9	Unmodified	_EPASDQLII_					0	0	0			REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2642517089844	2	493.263665	984.512776	0.75936	0.00037457	-0.83972	-0.0004142	-0.080356	-3.9637E-05	493.26327053213487	71.418	1.4371	71.13	70.546	71.983	-0.28858					114	36	6	0	0	0	0.29158	1	8642	8642		76.774	2.7994	1	11187000	+		13346	37168	9369	9387	14708	14708					0.01990043969431099
EPASEPGSP	9	Unmodified	_EPASEPGSP_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.2533874511719	2	435.695615	869.376677	0.71904	0.00031328	-0.10171	-4.4316E-05	0.61733	0.00026897	435.69504312383486	50.378	0.44832	50.198	49.978	50.426	-0.18071					14	11	2	0	0	0	0.02435	1	5099	5099		42.396	20.436	1	60559			13347	5695	9370	9388	14709	14709					-0.06323650541230563
EPAVWWSL	8	Unmodified	_EPAVWWSL_					0	0	0			REV__ENST00000496976.1_1_2:189454447-189458735:+|nuORF	REV__ENST00000496976.1_1_2:189454447-189458735:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7894287109375	2	494.25036	986.486168	0.60968	0.00030133	-0.56462	-0.00027906	0.04506	2.2271E-05	494.2500291400594	88.263	0.51006	88.263	88.003	88.513	0					17	11	2	0	0	0	0.027866	1	11146	11146		42.474	14.592	1	71753	+		13348	33842	9371	9389	14710	14710					-0.007616001312385379
EPAWERHL	8	Unmodified	_EPAWERHL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.825439453125	2	519.261791	1036.50903	-0.92064	-0.00047806	2.4771	0.0012863	1.5565	0.00080823	519.2624061428774	81.186	0.88474	81.056	80.82	81.705	-0.13075					49	21	3	0	0	0	0.027866	1	10113	10113		76.847	5.5509	1	793340			13349	6479	9372	9390	14711	14711					-0.007765810137698281
EPCAPHISTV	10	Unmodified	_EPCAPHISTV_					0	0	0			REV__ENST00000487969.1_1_22:50316965-50317085:+|nuORF	REV__ENST00000487969.1_1_22:50316965-50317085:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.8239135742188	2	527.255317	1052.49608	-0.047041	-2.4803E-05	2.2603	0.0011918	2.2133	0.001167	527.2576322237104	68.952	0.89664	68.967	68.569	69.465	0.015129					49	23	3	0	0	0	0.03519	1	8169	8169		19.997	0	1	262440	+		13350	33629	9373	9391	14712	14712					-0.028067801881888954
EPCGGGGA	8	Unmodified	_EPCGGGGA_					0	0	0		nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	647.8131103515625	1	647.245351	646.238075	-0.064538	-4.1772E-05	1.601	0.0010363	1.5365	0.00099449	647.2463363719695	62.915	0.91226	62.732	62.553	63.465	-0.18386					31	24	2	0	0	0	0.027866	1	7104	7104		13.775	4.953	1	448750			13351	7079	9374	9392	14713	14713					-0.09919471990542661
EPCNGRTAL	9	Unmodified	_EPCNGRTAL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7310791015625	2	480.732009	959.449465	-0.13761	-6.6153E-05	0.29811	0.00014331	0.1605	7.7158E-05	480.7321315524798	31.624	6.3562	31.624	29.773	36.129	0					309	163	4	0	0	0	0.5973	1	2143	2143		52.937	3.4952	1	7088900			13352	2258	9375	9393	14714	14714					-0.031882200194672805
EPCNGRTAL	9	Unmodified	_EPCNGRTAL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.73187255859375	2	480.732009	959.449465	-0.37385	-0.00017972	0.2593	0.00012465	-0.11455	-5.5068E-05	480.7321405153963	31.237	3.3748	31.306	29.359	32.734	0.068962					202	83	4	0	0	0	0.39228	4	2002	2002;2014;2038;2064		66.429	25.857	1	10183000			13353	2258	9375	9393	14715;14716;14717;14718	14715					-0.031882200194672805
EPCPDSDFLL	10	Unmodified	_EPCPDSDFLL_					0	0	0		ENSG00000163599|ENST00000648405|CTLA4	ENSG00000163599|ENST00000648405|CTLA4	ENSG00000163599|ENST00000648405|CTLA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.8029174804688	2	568.25244	1134.49033	0.24884	0.0001414	2.2827	0.0012971	2.5315	0.0014385	568.2537524217101	97.834	0.69061	97.844	97.372	98.062	0.010239					23	15	2	0	0	0	0.03519	1	12393	12393		42.396	6.7778	1	67933			13354	7111	9376	9394	14719	14719					-0.07153923490500347
EPCPREKQR	9	Unmodified	_EPCPREKQR_					0	0	0		nc|ENSG00000141527|Q9BXL6-3|CARD14;ENST00000571861.5_1_17:78162196-78169468:+|nuORF;nc|ENSG00000141527|Q9BXL6-2|CARD14;ENSG00000141527|ENST00000648509|CARD14;ENST00000575500.5_2_17:78163648-78178987:+|nuORF	nc|ENSG00000141527|Q9BXL6-3|CARD14;ENST00000575500.5_2_17:78163648-78178987:+|nuORF	ENST00000575500.5_2_17:78163648-78178987:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.7882080078125	2	571.790389	1141.56623	-0.11844	-6.7723E-05	-1.9875	-0.0011365	-2.106	-0.0012042	571.789215614259	16.863	0.38177	16.655	16.48	16.862	-0.20777					13	7	3	0	0	0	0.87448	1	100	100		34.173	11.13	1	70493			13355	18340;17100	9377	9395	14720	14720					0.0011051820029024384
EPCSPLLLSL	10	Unmodified	_EPCSPLLLSL_					0	0	0			REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.773193359375	2	536.291368	1070.56818	-0.59999	-0.00032177	-1.1602	-0.00062221	-1.7602	-0.00094398	536.2904210696446	41.558	0.2422	41.581	41.464	41.706	0.023006					9	6	2	0	0	0	0.03519	1	3700	3700		37.812	11.119	1	246710	+		13356	31628	9378	9396	14721	14721					0.03572134165551688
EPCTEGFIQG	10	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))TEGFIQG_	EPC(1)TEGFIQG		EPC(74)TEGFIQG		0	1	0		ENST00000600457.5_1_19:53157655-53158938:-|nuORF;ENST00000600714.5_1_19:53138396-53158938:-|nuORF;ENST00000391777.3_1_19:53432579-53456083:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2490844726562	2	569.247689	1136.48082	0.0081422	4.6349E-06	3.0106	0.0017138	3.0188	0.0017184	569.2490311993165	59.81	1.5706	59.561	59.17	60.741	-0.24842					81	39	3	0	0	0	0.62431	1	6621	6621		74.255	12.148	1	1828400			13357	13393	9379	9397	14722	14722	181				-0.08195691776040803
EPCTEGFIQG	10	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))TEGFIQG_					0	1	0		ENST00000600457.5_1_19:53157655-53158938:-|nuORF;ENST00000600714.5_1_19:53138396-53158938:-|nuORF;ENST00000391777.3_1_19:53432579-53456083:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.247689	1136.48082	0.39602	0.00022543	2.3127	0.0013165	2.7088	0.0015419	569.2488305293241	59.436	1.0733	59.436	59.145	60.219	0	-0.035302	-0.00039086	NaN	74.255	47	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	697170			13358	13393	9379	9397			181				-0.08195691776040803
EPCTEGFIQG	10	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))TEGFIQG_					0	1	0		ENST00000600457.5_1_19:53157655-53158938:-|nuORF;ENST00000600714.5_1_19:53138396-53158938:-|nuORF;ENST00000391777.3_1_19:53432579-53456083:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.247689	1136.48082	0.51306	0.00029206	2.3313	0.0013271	2.8444	0.0016192	569.248901905158	59.579	1.0322	59.379	59.099	60.132	-0.20016	-0.092149	-0.00036967	NaN	74.255	50	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713290			13359	13393	9379	9397			181				-0.08195691776040803
EPCTEGFIQG	10	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))TEGFIQG_					0	1	0		ENST00000600457.5_1_19:53157655-53158938:-|nuORF;ENST00000600714.5_1_19:53138396-53158938:-|nuORF;ENST00000391777.3_1_19:53432579-53456083:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.247689	1136.48082	-0.5844	-0.00033267	3.2505	0.0018504	2.6661	0.0015177	569.2494814188371	59.283	1.15	59.369	59.099	60.249	0.085682	-0.10268	0.00067681	NaN	74.255	57	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739560			13360	13393	9379	9397			181				-0.08195691776040803
EPCTEGFIQG	10	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))TEGFIQG_					0	1	0		ENST00000600457.5_1_19:53157655-53158938:-|nuORF;ENST00000600714.5_1_19:53138396-53158938:-|nuORF;ENST00000391777.3_1_19:53432579-53456083:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	569.247689	1136.48082	1.0613	0.00060411	2.3181	0.0013196	3.3794	0.0019237	569.2485239849415	59.754	1.4967	59.557	59.132	60.628	-0.19742	0.08521	-0.00038472	NaN	74.255	93	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839300			13361	13393	9379	9397			181				-0.08195691776040803
EPCTEGFIQG	10	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))TEGFIQG_					0	1	0		ENST00000600457.5_1_19:53157655-53158938:-|nuORF;ENST00000600714.5_1_19:53138396-53158938:-|nuORF;ENST00000391777.3_1_19:53432579-53456083:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	ENST00000600457.5_1_19:53157655-53158938:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	569.247689	1136.48082	0.6007	0.00034195	2.7257	0.0015516	3.3264	0.0018935	569.2487850460918	59.703	1.3666	59.527	59.037	60.403	-0.1761	0.0551	7.9252E-05	NaN	74.255	91	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1913200			13362	13393	9379	9397			181				-0.08195691776040803
EPCWKLMRNL	10	Unmodified	_EPCWKLMRNL_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	431.5509948730469	3	430.554621	1288.64203	-0.82865	-0.00035678	-1.3226	-0.00056945	-2.1512	-0.00092623	430.55371853152934	36.322	0.4898	36.28	35.963	36.453	-0.042454					18	13	2	0	0	0	0.03519	1	2889	2889		26.063	0	1	94546			13363	2480;18139	9380	9398	14723	14723					0.009257790562287482
EPCWKLMRNL	10	Unmodified	_EPCWKLMRNL_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	430.554621	1288.64203	-0.013677	-5.8889E-06	0.057798	2.4885E-05	0.04412	1.8996E-05	430.88877011602125	36.279	0.63911	36.074	35.886	36.525	-0.20518	-0.10297	0.00082355	NaN	26.063	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130050			13364	2480;18139	9380	9398							0.009257790562287482
EPDAEAAPGP	10	Unmodified	_EPDAEAAPGP_					0	0	0			REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	REV__ENST00000594346.1_1_13:99098688-99099072:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.2379455566406	2	477.214172	952.413791	-0.10229	-4.8812E-05	-2.4266	-0.001158	-2.5289	-0.0012068	477.2130248952727	31.16	0.65169	31.229	30.955	31.606	0.06896					39	15	4	0	0	0	0.03519	1	2050	2050		23.042	3.6825	1	621050	+		13365	35775	9381	9399	14724	14724					-0.06431978995465215
EPDAGPTLPRA	11	Unmodified	_EPDAGPTLPRA_					0	0	0		ENST00000528819.1_1_11:74570221-74618263:-|nuORF	ENST00000528819.1_1_11:74570221-74618263:-|nuORF	ENST00000528819.1_1_11:74570221-74618263:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.26904296875	2	562.290745	1122.56694	0.51875	0.00029169	-1.7966	-0.0010102	-1.2779	-0.00071855	562.289644635816	79.75	0.4599	79.504	79.278	79.738	-0.2465					9	5	2	0	0	0	0.02475	1	9535	9535		28.081	0.19925	1	264920			13366	16192	9382	9400	14725	14725					0.010556361209864917
EPDAYSTN	8	Unmodified	_EPDAYSTN_					0	0	0			REV__ENSG00000030304|ENST00000374448|MUSK	REV__ENSG00000030304|ENST00000374448|MUSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2350158691406	2	448.685247	895.355941	-1.2315	-0.00055258	2.1924	0.00098368	0.96082	0.00043111	448.6861695175116	37.938	0.39926	37.938	37.735	38.134	0					18	11	2	0	0	0	0.027866	1	3108	3108		76.774	28.859	1	161910	+		13367	20043	9383	9401	14726	14726					-0.09592240920892436
EPDEPFIND	9	Unmodified	_EPDEPFIND_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.2665405273438	2	538.232561	1074.45057	-0.031193	-1.6789E-05	-1.608	-0.00086546	-1.6392	-0.00088225	538.2312999384276	32.31	0.34988	32.118	31.899	32.249	-0.19261					16	7	3	0	0	0	0.024523	1	2223	2223		10.265	0	1	63735	+		13368	20738	9384	9402	14727	14727					-0.08367727169547834
EPDFHRLD	8	Unmodified	_EPDFHRLD_					0	0	0			REV__nc|ENSG00000118515|O00141-3|SGK1	REV__nc|ENSG00000118515|O00141-3|SGK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8182373046875	2	514.743431	1027.47231	0.65866	0.00033904	-1.523	-0.00078398	-0.86438	-0.00044493	514.7426219215927	72.525	0.59115	72.243	71.956	72.547	-0.28124					22	14	2	0	0	0	0.027866	1	8815	8815		50.025	0	1	184260	+		13369	36604	9385	9403	14728	14728					-0.04032877630334042
EPDFTVLL	8	Unmodified	_EPDFTVLL_					0	0	0			REV__nc|ENSG00000198689|Q92581-1|SLC9A6	REV__nc|ENSG00000198689|Q92581-1|SLC9A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7315368652344	2	467.250026	932.485499	-1.0675	-0.00049879	-0.1598	-7.4667E-05	-1.2273	-0.00057346	467.2505183844361	60.422	0.44179	60.501	60.28	60.722	0.078888					17	11	2	0	0	0	0.027866	1	6834	6834		52.299	7.7681	1	160840	+		13370	37069	9386	9404	14729	14729					0.01655560429048819
EPDIPGNQE	9	Unmodified	_EPDIPGNQE_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7731018066406	2	499.724904	997.435254	-0.32769	-0.00016375	-2.893	-0.0014457	-3.2207	-0.0016095	499.72329797854053	24.236	0.92761	24.236	24.036	24.964	0					31	20	3	0	0	0	0.024209	1	1100	1100		47.657	0	1	230740	+		13371	20421	9387	9405	14730	14730					-0.0635659396674555
EPDKNLLEV	9	Unmodified	_EPDKNLLEV_					0	0	0		nc|ENSG00000258469|P59074|CHMP4BP1	nc|ENSG00000258469|P59074|CHMP4BP1	nc|ENSG00000258469|P59074|CHMP4BP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3447265625	2	528.782222	1055.54989	-1.0522	-0.00055639	3.2295	0.0017077	2.1773	0.0011513	528.7837884434748	54.285	0.62054	54.285	53.872	54.492	0					25	17	2	0	0	0	0.021513	1	5936	5936		104.75	30.492	1	401150			13372	18777	9388	9406	14731	14731					0.024337155151897605
EPDLAPAIKY	10	Unmodified	_EPDLAPAIKY_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.8001098632812	2	558.800414	1115.58628	-0.063725	-3.561E-05	-0.27787	-0.00015528	-0.3416	-0.00019089	558.8000782592148	86.848	1.1125	86.661	85.991	87.104	-0.18696					64	25	4	0	0	0	0.88896	1	10541	10541		54.776	1.4249	1	1049100			13373	10872	9389	9407	14732	14732					0.033105924118899566
EPDLFIKT	8	Unmodified	_EPDLFIKT_					0	0	0			REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.260986328125	2	481.7633	961.512048	-0.21565	-0.00010389	0.54328	0.00026173	0.32763	0.00015784	481.76327737158414	86.677	0.89007	86.698	86.33	87.22	0.021263					33	20	2	0	0	0	0.027866	1	10886	10886		29.15	3.6994	1	506400	+		13374	20713	9390	9408	14733	14733					0.029752493203773156
EPDLFIKT	8	Unmodified	_EPDLFIKT_					0	0	0			REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.7633	961.512048	0.67463	0.00032501	-0.33563	-0.00016169	0.33901	0.00016332	481.76289034669213	86.712	0.68111	86.712	86.386	87.067	0	0.040195	-0.0004907	NaN	45.952	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437990	+		13375	20713	9390	9408							0.029752493203773156
EPDLFIKT	8	Unmodified	_EPDLFIKT_					0	0	0			REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.7633	961.512048	0.16524	7.9608E-05	0.31289	0.00015074	0.47814	0.00023035	481.7631921475312	86.651	0.72279	86.605	86.293	87.016	-0.045105	-0.066388	0.00013417	NaN	45.952	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439480	+		13376	20713	9390	9408							0.029752493203773156
EPDLHIEDL	9	Unmodified	_EPDLHIEDL_					0	0	0		ENST00000533675.5_1_11:117265793-117282881:+|nuORF;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.7642211914062	2	540.764029	1079.5135	-0.53455	-0.00028907	1.1836	0.00064007	0.64909	0.00035101	540.7645140691427	49.878	1.3574	49.727	49.33	50.687	-0.1512					105	38	3	0	0	0	0.62163	1	5162	5162		51.335	3.6781	1	6169200			13377	3032	9391	9409	14734	14734					-0.023071613815318415
EPDLNESFAKK	11	Unmodified	_EPDLNESFAKK_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.58660888671875	3	426.550587	1276.62993	0.34697	0.000148	-2.2476	-0.00095872	-1.9006	-0.00081072	426.54952377852374	18.278	0.29745	18.074	17.965	18.262	-0.20371					8	5	2	0	0	0	0.024726	1	294	294		20.315	0	1	11590	+		13378	25697	9392	9410	14735	14735					0.0026815711835297407
EPDNPRQL	8	Unmodified	_EPDNPRQL_					0	0	0			REV__ENSG00000215853|ENST00000316073|RPTN	REV__ENSG00000215853|ENST00000316073|RPTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.26654052734375	2	484.743431	967.472308	0.23431	0.00011358	4.072	0.0019739	4.3063	0.0020875	484.7448864764061	67.868	0.40848	67.63	67.378	67.787	-0.23814					13	9	2	0	0	0	0.027866	1	7842	7842		37.159	0	1	46302	+		13379	28814	9393	9411	14736	14736					-0.012728776303333689
EPDPVKRPN	9	Unmodified	_EPDPVKRPN_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7243041992188	2	526.28018	1050.54581	0.25152	0.00013237	-3.863	-0.002033	-3.6115	-0.0019006	526.2771871741598	89.656	0.89035	89.518	89.068	89.958	-0.13762					44	20	3	0	0	0	0.024319	1	10936	10936		31.53	0	1	78863			13380	5537	9394	9412	14737	14737					0.022556708121328484
EPDRVKVM	8	Unmodified	_EPDRVKVM_					0	0	0			REV__FBXW7|p.W526R|1|0.17|ENSG00000109670|chr4:152326074-152326074|A/G|missense_variant	REV__FBXW7|p.W526R|1|0.17|ENSG00000109670|chr4:152326074-152326074|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7740173339844	2	487.260402	972.506251	-0.14996	-7.3069E-05	0.63704	0.00031041	0.48708	0.00023734	487.2586940806484	27.128	1.5285	26.971	26.314	27.842	-0.15664					106	36	6	0	0	0	0.027866	1	1494	1494		37.159	0	1	619140	+		13381	36031	9395	9413	14738	14738					0.018898275370702322
EPDSRSAR	8	Unmodified	_EPDSRSAR_					0	0	0			REV__ENSG00000197355|ENST00000409858|UAP1L1	REV__ENSG00000197355|ENST00000409858|UAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.92144775390625	2	459.225405	916.436257	-0.065341	-3.0006E-05	0.026479	1.216E-05	-0.038862	-1.7846E-05	459.2252900036725	24.444	1.294	24.229	23.778	25.072	-0.2151					63	29	3	0	0	0	0.027866	1	1135	1135		7.1934	0	1	530760	+		13382	28294	9396	9414	14739	14739					-0.025303348071929577
EPDSRSAR	8	Unmodified	_EPDSRSAR_					0	0	0			REV__ENSG00000197355|ENST00000409858|UAP1L1	REV__ENSG00000197355|ENST00000409858|UAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.92156982421875	2	459.225405	916.436257	1.3574	0.00062335	-1.9143	-0.00087909	-0.55689	-0.00025574	459.22438029214544	24.913	0.93584	24.741	24.513	25.449	-0.17151					32	21	2	0	0	0	0.027866	1	1081	1081		16.473	0	1	153580	+		13383	28294	9396	9414	14740	14740					-0.025303348071929577
EPDSVTLYAGV	11	Unmodified	_EPDSVTLYAGV_					0	0	0			REV__ENSG00000078081|ENST00000265598|LAMP3	REV__ENSG00000078081|ENST00000265598|LAMP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.3079833984375	2	575.784961	1149.55537	-0.58945	-0.00033939	-1.7901	-0.0010307	-2.3796	-0.0013701	575.7841949833909	74.941	0.43922	74.951	74.732	75.171	0.010376					15	10	2	0	0	0	0.024785	1	9110	9110		54.776	17.617	1	68677	+		13384	20603	9397	9415	14741	14741					-0.013426056930029517
EPEAADLDLT	10	Unmodified	_EPEAADLDLT_					0	0	0		ENST00000603624.1_1_9:138360069-138360393:-|nuORF	ENST00000603624.1_1_9:138360069-138360393:-|nuORF	ENST00000603624.1_1_9:138360069-138360393:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.78564453125	2	537.253494	1072.49243	-1.0236	-0.00054993	2.9951	0.0016091	1.9715	0.0010592	537.2546411202351	31.489	1.6692	31.489	30.592	32.262	0					54	40	2	0	0	0	0.03519	1	2208	2208		23.042	3.6825	1	117350			13385	17547	9398	9416	14742	14742					-0.04091171481059064
EPEADPVPEDA	11	Unmodified	_EPEADPVPEDA_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.7538452148438	2	584.753858	1167.49316	-0.29564	-0.00017288	0.67267	0.00039335	0.37703	0.00022047	584.7541833077536	70.283	0.52227	70.069	69.73	70.253	-0.21425					21	11	2	0	0	0	0.48498	1	8185	8185		77.318	8.5308	1	2628400	+		13386	26205	9399	9417	14743	14743					-0.08388376831999267
EPEALSPVPA	10	Unmodified	_EPEALSPVPA_					0	0	0		nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	nc|ENSG00000160271|Q12967-3|RALGDS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7978515625	2	505.263665	1008.51278	-0.8905	-0.00044994	0.96555	0.00048786	0.075045	3.7918E-05	505.2640400908468	80.805	0.88077	80.829	80.53	81.411	0.023903					48	21	3	0	0	0	0.03519	1	9967	9967		56.721	7.2795	1	1100300			13387	6799	9400	9418	14744	14744					0.008860439694331035
EPEAVWGGGAP	11	Unmodified	_EPEAVWGGGAP_					0	0	0		ENST00000309033.4_1_2:24163342-24163486:+|nuORF	ENST00000309033.4_1_2:24163342-24163486:+|nuORF	ENST00000309033.4_1_2:24163342-24163486:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.236572265625	2	535.251089	1068.48762	-0.649	-0.00034738	-3.305	-0.001769	-3.954	-0.0021164	535.2490881660051	69.477	0.45373	69.254	69.02	69.474	-0.22245					18	10	2	0	0	0	0.024776	1	8038	8038		40.778	5.1599	1	212420			13388	12038	9401	9419	14745	14745					-0.043880108331450174
EPECMVPVV	9	Carbamidomethyl (C),Oxidation (M)	_EPEC(Carbamidomethyl (C))M(Oxidation (M))VPVV_	EPEC(1)MVPVV	EPECM(1)VPVV	EPEC(58)MVPVV	EPECM(58)VPVV	0	1	1		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2470092773438	2	538.24356	1074.47257	-0.59003	-0.00031758	1.883	0.0010135	1.2929	0.00069591	538.2453152102514	55.755	1.2862	55.599	55.293	56.58	-0.15601					93	34	5	0	0	0	0.52323	1	6177	6177		57.811	13.694	1	11106000			13389	756	9402	9420	14746	14746	11	21			-0.06168962016977275
EPECMVPVV	9	Carbamidomethyl (C),Oxidation (M)	_EPEC(Carbamidomethyl (C))M(Oxidation (M))VPVV_	EPEC(1)MVPVV	EPECM(1)VPVV	EPEC(48)MVPVV	EPECM(48)VPVV	0	1	1		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2483520507812	2	538.24356	1074.47257	-0.71683	-0.00038583	-1.3071	-0.00070355	-2.024	-0.0010894	538.2427188554639	56.313	0.20362	56.156	56.011	56.215	-0.15656					7	4	2	0	0	0	0.024436	1	6073	6073		47.916	15.961	1	253430			13390	756	9402	9420	14747	14747	11	21			-0.06168962016977275
EPEDFAVYY	9	Unmodified	_EPEDFAVYY_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2689819335938	2	566.745305	1131.47606	-1.0861	-0.00061556	2.937	0.0016645	1.8508	0.0010489	566.747059336616	40.857	0.17339	40.88	40.797	40.97	0.023006					6	4	2	0	0	0	0.024262	1	3559	3559		47.916	7.1374	1	152050			13391	18679	9403	9421	14748	14748					-0.08442252647137138
EPEDRVRRMDK	11	Unmodified	_EPEDRVRRMDK_					0	0	0			REV__ENSG00000204815|ENST00000377540|ODAD4	REV__ENSG00000204815|ENST00000377540|ODAD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.2796630859375	3	477.577142	1429.7096	-1.0802	-0.00051586	1.6029	0.00076549	0.52271	0.00024963	477.5777165797348	37.454	0.39236	37.235	37.114	37.506	-0.2195					12	9	2	0	0	0	0.024723	1	3013	3013		35.178	4.6094	1	74051	+		13392	28636	9404	9422	14749	14749					0.01192900520686635
EPEEEVVPSI	10	Unmodified	_EPEEEVVPSI_					0	0	0			REV__nc|ENSG00000133858|O60293-2|ZFC3H1	REV__nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2774047851562	2	564.276969	1126.53938	-0.57731	-0.00032576	1.4311	0.00080755	0.85381	0.00048179	564.2776143998179	90.76	0.90979	90.635	90.374	91.284	-0.12513					49	21	3	0	0	0	0.82838	1	11149	11149		58.782	0	1	2104200	+		13393	23400	9405	9423	14750	14750					-0.018823119298986057
EPEEFDSDTL	10	Unmodified	_EPEEFDSDTL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.3038940429688	2	591.245866	1180.47718	-1.8873	-0.0011158	-1.8159	-0.0010737	-3.7032	-0.0021895	591.2445749211324	40.808	0.7329	40.578	40.308	41.041	-0.2303					40	19	3	0	0	0	0.03519	1	3607	3607		20.947	7.4929	1	1150200			13394	6481	9406	9424	14751	14751					-0.10584083068874861
EPEELEAID	9	Unmodified	_EPEELEAID_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.816650390625	2	522.740219	1043.46589	-0.71948	-0.0003761	-1.1855	-0.00061971	-1.905	-0.00099581	522.7385750813156	65.141	0.56134	64.907	64.49	65.052	-0.2345					22	13	2	0	0	0	0.023817	1	7421	7421		26.693	0	1	132130	+		13395	20911	9407	9425	14752	14752					-0.05410860372376192
EPEEVREQDQ	10	Unmodified	_EPEEVREQDQ_					0	0	0		ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.2403564453125	3	420.189718	1257.54732	-0.49348	-0.00020736	1.5407	0.00064737	1.0472	0.00044001	420.19045356128873	36.966	0.6666	36.746	36.447	37.114	-0.2195					25	16	2	0	0	0	0.03519	1	2968	2968		13.508	0.55046	1	159790			13396	10842	9408	9426	14753	14753					-0.07114784680402408
EPEEVREQDQ	10	Unmodified	_EPEEVREQDQ_					0	0	0		ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	ENSG00000249693|ENST00000512175|THEGL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	420.189718	1257.54732	0.29741	0.00012497	1.6398	0.00068901	1.9372	0.00081398	420.1905988082987	36.958	0.51157	36.765	36.455	36.966	-0.193	0.0058601	0.00054586	NaN	18.531	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178560			13397	10842	9408	9426							-0.07114784680402408
EPEFQIFR	8	Unmodified	_EPEFQIFR_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7913818359375	2	533.271824	1064.5291	0.65899	0.00035142	-1.3355	-0.00071216	-0.67647	-0.00036074	533.2708814050314	20.485	1.0812	20.554	19.924	21.005	0.068901					35	21	3	0	0	0	0.027866	1	426	426		31.955	0	1	46454	+		13398	21814	9409	9427	14754	14754					-0.0005883007379452465
EPEGPTPPGL	10	Unmodified	_EPEGPTPPGL_					0	0	0			REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.8235778808594	2	497.248015	992.481476	-0.3924	-0.00019512	0.98283	0.00048871	0.59043	0.00029359	497.2481016421364	70.248	0.45514	69.981	69.704	70.159	-0.26724					24	10	3	0	0	0	0.03519	1	8146	8146		26.693	0	1	356670	+		13399	25392	9410	9428	14755	14755					-0.015065290646703033
EPEGPTPPGL	10	Unmodified	_EPEGPTPPGL_					0	0	0			REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.8240051269531	2	497.248015	992.481476	-0.011229	-5.5835E-06	-0.13475	-6.7005E-05	-0.14598	-7.2588E-05	497.2478352793499	70.17	0.57406	69.919	69.608	70.182	-0.25063					32	13	3	0	0	0	0.03519	1	8140	8140		51.335	18.523	1	565970	+		13400	25392	9410	9428	14756	14756					-0.015065290646703033
EPEGPTPPGL	10	Unmodified	_EPEGPTPPGL_					0	0	0			REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.8238830566406	2	497.248015	992.481476	0.010799	5.37E-06	-0.041481	-2.0626E-05	-0.030681	-1.5256E-05	497.2478907501638	70.171	0.52724	69.957	69.646	70.174	-0.21425					28	12	3	0	0	0	0.03519	1	8124	8124		19.997	0	1	680730	+		13401	25392	9410	9428	14757	14757					-0.015065290646703033
EPEINIEEKEP	11	Unmodified	_EPEINIEEKEP_					0	0	0		ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.25897216796875	3	442.885635	1325.63508	-0.39386	-0.00017443	-0.95363	-0.00042235	-1.3475	-0.00059678	442.8850466236361	23.141	0.99152	23.217	22.656	23.647	0.076241					48	22	3	0	0	0	0.024735	1	887	887		16.53	5.9431	1	169970			13402	11078	9411	9429	14758	14758					-0.014715838096662992
EPEISFYP	8	Unmodified	_EPEISFYP_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.82940673828125	2	491.231833	980.449113	-0.95088	-0.0004671	-2.5441	-0.0012498	-3.495	-0.0017169	491.2303644257588	26.033	0.235	25.87	25.716	25.951	-0.16331					10	6	2	0	0	0	0.027866	1	1266	1266		54.765	24.261	1	107030	+		13403	24716	9412	9430	14759	14759					-0.041893164676707784
EPELDIISN	9	Unmodified	_EPELDIISN_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2;ENST00000469915.1_1_22:31332963-31338135:-|nuORF	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3096923828125	2	515.258579	1028.50261	-0.42417	-0.00021856	3.521	0.0018142	3.0969	0.0015957	515.2597759263438	60.512	0.20592	60.306	60.172	60.378	-0.20599					6	4	2	0	0	0	0.024477	1	6739	6739		14.865	0	1	30349			13404	4706	9413	9431	14760	14760					-0.010505637558026137
EPEPFVLH	8	Unmodified	_EPEPFVLH_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.79248046875	2	484.247818	966.481082	-0.050196	-2.4307E-05	3.682	0.001783	3.6318	0.0017587	484.2495026099058	71.136	0.72269	70.879	70.564	71.286	-0.25712					29	16	2	0	0	0	0.027866	1	8282	8282		44.531	8.9128	1	442810			13405	10180	9414	9432	14761	14761					-0.0034990399386742865
EPEPFVLH	8	Unmodified	_EPEPFVLH_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.247818	966.481082	0.77975	0.00037759	2.4893	0.0012054	3.269	0.001583	484.24857230423356	70.837	0.48863	70.837	70.656	71.145	0	-0.016032	-0.00073454	NaN	35.201	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265470			13406	10180	9414	9432							-0.0034990399386742865
EPEPFVLH	8	Unmodified	_EPEPFVLH_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.247818	966.481082	0.87117	0.00042186	2.6858	0.0013006	3.5569	0.0017224	484.248935568225	71.133	0.39754	70.842	70.675	71.072	-0.2907	-0.010742	-0.00054426	NaN	35.201	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187790			13407	10180	9414	9432							-0.0034990399386742865
EPEPFVLH	8	Unmodified	_EPEPFVLH_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.247818	966.481082	-0.30405	-0.00014724	3.7474	0.0018147	3.4433	0.0016674	484.2494982899072	70.906	0.36142	70.917	70.725	71.086	0.010735	0.063874	0.00048389	NaN	35.201	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154340			13408	10180	9414	9432							-0.0034990399386742865
EPEPFVLH	8	Unmodified	_EPEPFVLH_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.247818	966.481082	0.84698	0.00041015	2.8419	0.0013762	3.6889	0.0017863	484.2490441126168	71.018	0.52338	70.804	70.563	71.086	-0.21425	-0.049208	-0.00039303	NaN	35.201	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470990			13409	10180	9414	9432							-0.0034990399386742865
EPEPQILDF	9	Unmodified	_EPEPQILDF_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2364501953125	2	544.268947	1086.52334	0.03481	1.8946E-05	-0.0038621	-2.102E-06	0.030948	1.6844E-05	544.2687711901268	58.675	1.5838	58.433	57.918	59.502	-0.24166					75	37	4	0	0	0	0.024209	1	6476	6476		66.429	14.13	1	2133800			13410	6877	9415	9433	14762	14762					-0.016459733761621465
EPEQARINH	9	Unmodified	_EPEQARINH_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3275756835938	2	547.272887	1092.53122	-0.33383	-0.0001827	4.4373	0.0024284	4.1035	0.0022457	547.2755552531834	41.166	1.8731	41.166	40.281	42.154	0					172	53	5	0	0	0	0.022587	1	3608	3608		96.19	16.739	1	13975000	+		13411	29042	9416	9434	14763	14763					-0.011344013360258032
EPERALRQ	8	Unmodified	_EPERALRQ_					0	0	0		ENST00000389817.7_1_11:17417252-17419904:-|nuORF	ENST00000389817.7_1_11:17417252-17419904:-|nuORF	ENST00000389817.7_1_11:17417252-17419904:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.77227783203125	2	499.772522	997.530492	0.33363	0.00016674	-0.040127	-2.0054E-05	0.29351	0.00014669	499.7721927740948	24.493	1.15	24.571	24.184	25.334	0.078344					39	25	3	0	0	0	0.77775	1	1026	1026		60.972	2.19	1	943300			13412	13382	9417	9435	14764	14764					0.03162804014937137
EPERKIKEL	9	Unmodified	_EPERKIKEL_					0	0	0		ENSG00000165325|ENST00000298050|DEUP1;nc|ENSG00000165325|Q05D60-2|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.3319091796875	2	571.332413	1140.65027	0.78208	0.00044683	-1.4625	-0.00083558	-0.68043	-0.00038875	571.331351758224	63.858	0.97429	63.858	63.41	64.384	0					58	26	4	0	0	0	0.32064	1	7509	7509		72.879	3.2516	1	2462400			13413	7400	9418	9436	14765	14765					0.08557372568861865
EPETFLPLD	9	Unmodified	_EPETFLPLD_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.76318359375	2	530.763497	1059.51244	-0.65473	-0.00034751	-0.0065448	-3.4738E-06	-0.66128	-0.00035098	530.763574052453	104.11	0.59893	104.11	103.78	104.38	0					20	13	2	0	0	0	0.59099	1	13362	13362		53.351	2.1588	1	115400			13414	1482	9419	9437	14766	14766					-0.014933757504195455
EPETKVAKTE	10	Unmodified	_EPETKVAKTE_					0	0	0			REV__nc|ENSG00000153113|P20810-4|CAST	REV__nc|ENSG00000153113|P20810-4|CAST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.7669067382812	2	566.298236	1130.58192	-1.253	-0.00070956	3.3562	0.0019006	2.1032	0.0011911	566.2997397610548	40.909	0.40122	40.678	40.485	40.886	-0.23029					13	10	2	0	0	0	0.03519	1	3589	3589		39.253	3.6345	1	145130	+		13415	36794	9420	9438	14767	14767					0.021850831983556418
EPETKVAKTE	10	Unmodified	_EPETKVAKTE_					0	0	0			REV__nc|ENSG00000153113|P20810-4|CAST	REV__nc|ENSG00000153113|P20810-4|CAST	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	566.298236	1130.58192	-0.54436	-0.00030827	3.4019	0.0019265	2.8576	0.0016182	566.299977182161	40.571	0.32924	40.422	40.331	40.66	-0.1497	-0.12846	2.0079E-05	NaN	77.318	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122220	+		13416	36794	9420	9438							0.021850831983556418
EPEVESSPEL	10	Unmodified	_EPEVESSPEL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.314208984375	2	558.258776	1114.503	-0.55674	-0.00031081	1.724	0.00096242	1.1672	0.00065162	558.2595392263785	67.272	0.72288	66.983	66.707	67.429	-0.28835					34	17	3	0	0	0	0.03519	1	7964	7964		49.442	0	1	587000			13417	3392	9421	9439	14768	14768					-0.04967188826594793
EPEVEYETL	9	Unmodified	_EPEVEYETL_					0	0	0		nc|ENSG00000115109|Q9HCM4-4|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	nc|ENSG00000115109|Q9HCM4-4|EPB41L5	nc|ENSG00000115109|Q9HCM4-4|EPB41L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8314819335938	2	554.755869	1107.49719	-1.032	-0.00057252	1.5985	0.0008868	0.56651	0.00031427	554.7567643469431	48.679	0.60807	48.4	48.184	48.792	-0.27854					27	16	2	0	0	0	0.024405	1	4866	4866		14.865	0	1	509740			13418	18189	9422	9440	14769	14769					-0.05226287338268776
EPEVHLYP	8	Unmodified	_EPEVHLYP_					0	0	0			REV__nc|ENSG00000143514|Q13625-2|TP53BP2	REV__nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7823791503906	2	492.245275	982.475997	0.00072516	3.5696E-07	1.6242	0.00079951	1.6249	0.00079987	492.24456912244756	78.203	0.2001	78.203	78.082	78.282	0					8	4	2	0	0	0	0.027866	1	9674	9674		33.516	4.366	1	50117	+		13419	24257	9423	9441	14770	14770					-0.015942078564762596
EPEVLQVLE	9	Unmodified	_EPEVLQVLE_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2840576171875	2	528.284597	1054.55464	-0.057071	-3.015E-05	-0.47364	-0.00025022	-0.53071	-0.00028037	528.2843094792337	87.168	2.4173	87.132	85.503	87.921	-0.035355					112	57	4	0	0	0	0.086035	2	10930	10930;10942		115.49	22.092	1	11322000			13420	4317	9424	9442	14771;14772	14771					0.029545996579372513
EPEVLQVLE	9	Unmodified	_EPEVLQVLE_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2844848632812	2	528.284597	1054.55464	0.65879	0.00034803	-1.1992	-0.00063351	-0.54039	-0.00028548	528.2839205294782	87.138	1.9313	87.159	85.942	87.873	0.021263					103	45	4	0	0	0	0.19099	1	10865	10865		90.37	2.6155	1	11231000			13421	4317	9424	9442	14773	14773					0.029545996579372513
EPEVLQVLE	9	Unmodified	_EPEVLQVLE_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2844848632812	2	528.284597	1054.55464	-0.25277	-0.00013353	0.28915	0.00015275	0.036385	1.9222E-05	528.284590799653	87.227	1.3888	87.049	86.306	87.695	-0.17875					93	32	5	0	0	0	0.077175	2	10605	10605;10617		118.74	22.928	1	2268400			13422	4317	9424	9442	14774;14775	14774					0.029545996579372513
EPEVLQVLE	9	Unmodified	_EPEVLQVLE_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2842407226562	2	528.284597	1054.55464	0.25837	0.00013649	-0.28238	-0.00014918	-0.024012	-1.2685E-05	528.2842882139303	87.203	1.4327	87.066	86.327	87.76	-0.13613					94	33	5	0	0	0	0.30449	1	10625	10625		75.043	19.539	1	2151300			13423	4317	9424	9442	14776	14776					0.029545996579372513
EPEVLQVLE	9	Unmodified	_EPEVLQVLE_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2843627929688	2	528.284597	1054.55464	0.040374	2.1329E-05	-0.17496	-9.2431E-05	-0.13459	-7.1102E-05	528.2843800053182	87.191	1.5307	87.053	86.136	87.667	-0.13734					93	35	5	0	0	0	0.22902	1	10585	10585		85.161	0.2453	1	2169600			13424	4317	9424	9442	14777	14777					0.029545996579372513
EPFCTTELF	9	Unmodified	_EPFCTTELF_					0	0	0			REV__ENST00000421422.1_2_20:39812284-39812746:-|nuORF	REV__ENST00000421422.1_2_20:39812284-39812746:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2671508789062	2	543.74425	1085.47395	-0.44387	-0.00024135	-3.5267	-0.0019176	-3.9706	-0.002159	543.7421470327663	36.535	0.48283	36.329	36.164	36.647	-0.20518					19	11	2	0	0	0	0.024325	1	2846	2846		40.573	0	1	187330	+		13425	32179	9425	9443	14778	14778					-0.06537004656615863
EPFEQPLL	8	Unmodified	_EPFEQPLL_					0	0	0			REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	REV__nc|ENSG00000243335|Q96MP8-2|KCTD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.28155517578125	2	486.755475	971.496398	0.23083	0.00011236	-0.68025	-0.00033112	-0.44943	-0.00021876	486.75707513561656	80.406	0.33334	80.26	80.076	80.409	-0.146					12	7	2	0	0	0	0.027866	1	9650	9650		40.573	0	1	58244	+		13426	28988	9426	9444	14779	14779					0.009509628033470108
EPFFPLLL	8	Unmodified	_EPFFPLLL_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2305908203125	2	488.281129	974.547705	-0.09135	-4.4604E-05	0.85469	0.00041733	0.76334	0.00037272	488.2822738726185	31.34	2.1118	31.188	30.257	32.368	-0.15231					89	51	4	0	0	0	0.027866	1	2059	2059		29.842	0	1	286300	+		13427	24165	9427	9445	14780	14780					0.0594133156805583
EPFFYLAY	8	Unmodified	_EPFFYLAY_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2540893554688	2	525.252569	1048.49058	-0.30286	-0.00015908	3.4081	0.0017901	3.1053	0.001631	525.2542862946934	38.45	0.92046	38.231	37.926	38.846	-0.21849					67	25	4	0	0	0	0.95417	1	3156	3156		44.531	0.88028	1	4201200	+		13428	23169	9428	9446	14781	14781					-0.03172135708359747
EPFKRALL	8	Unmodified	_EPFKRALL_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2821350097656	2	487.295102	972.575651	-0.69213	-0.00033727	-0.11498	-5.6031E-05	-0.80711	-0.0003933	487.2949243930811	43.785	0.44454	43.566	43.42	43.864	-0.21939					19	11	2	0	0	0	0.027866	1	4021	4021		13.775	0	1	179070	+		13429	25566	9429	9447	14782	14782					0.08826654548136048
EPFLALDEL	9	Unmodified	_EPFLALDEL_					0	0	0			REV__nc|ENSG00000135622|O95754-2|SEMA4F	REV__nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.7743530273438	2	523.773865	1045.53318	-0.93771	-0.00049115	0.68608	0.00035935	-0.25163	-0.0001318	523.7741567924857	85.942	1.2294	85.965	85.45	86.68	0.023666					46	28	2	0	0	0	0.4752	1	10703	10703		60.972	4.2509	1	3865400	+		13430	23561	9430	9448	14783	14783					0.012232146292262769
EPFLCSIHT	9	Unmodified	_EPFLCSIHT_					0	0	0			REV__ENSG00000171823|ENST00000339235|FBXL14	REV__ENSG00000171823|ENST00000339235|FBXL14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8189086914062	2	523.75241	1045.49027	-0.23152	-0.00012126	0.69564	0.00036434	0.46412	0.00024308	523.7525532649689	54.517	1.0137	54.367	53.951	54.965	-0.15036					55	28	3	0	0	0	0.024405	1	5938	5938		53.351	26.555	1	1000600	+		13431	26607	9431	9449	14784	14784					-0.03065878699840141
EPFLICQQGT	10	Unmodified	_EPFLICQQGT_					0	0	0			REV__ENST00000369724.4_1_6:83905486-83905540:+|nuORF	REV__ENST00000369724.4_1_6:83905486-83905540:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2962646484375	2	568.276249	1134.53795	0.32716	0.00018592	-0.40749	-0.00023156	-0.080322	-4.5645E-05	568.2764077381587	21.318	0.28692	21.141	21.016	21.303	-0.17721					11	5	3	0	0	0	0.03519	1	664	664		13.454	0	1	64090	+		13432	31098	9432	9450	14785	14785					-0.02394224499653319
EPFLITNEI	9	Unmodified	_EPFLITNEI_					0	0	0		nc|ENSG00000166340|O14773-2|TPP1;ENSG00000166340|ENST00000299427|TPP1	nc|ENSG00000166340|O14773-2|TPP1	nc|ENSG00000166340|O14773-2|TPP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2889404296875	2	538.28714	1074.55973	-0.69214	-0.00037257	4.3954	0.002366	3.7033	0.0019934	538.2891852315364	89.563	1.0461	89.435	89.159	90.205	-0.12774					61	24	5	0	0	0	0.28753	1	10981	10981		77.318	7.69	1	1273700			13433	7542	9433	9451	14786	14786					0.02542903520566142
EPFNSNYCHVQ	11	Unmodified	_EPFNSNYCHVQ_					0	0	0			REV__EIF4G2|p.K845E|1|0.3|ENSG00000110321|chr11:10799216-10799216|T/C|missense_variant	REV__EIF4G2|p.K845E|1|0.3|ENSG00000110321|chr11:10799216-10799216|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	446.7496337890625	3	446.524155	1336.55064	-0.078123	-3.4884E-05	1.9629	0.00087649	1.8848	0.00084161	446.52528552688136	33.715	0.35885	33.484	33.356	33.714	-0.23107					14	8	2	0	0	0	0.024759	1	2450	2450		12.957	7.5446	1	85208	+		13434	19742	9434	9452	14787	14787					-0.10417813107437723
EPFRNLYSL	9	Unmodified	_EPFRNLYSL_					0	0	0			REV__ENST00000556072.2_1_14:77252910-77252988:-|nuORF	REV__ENST00000556072.2_1_14:77252910-77252988:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.7901611328125	2	569.798206	1137.58186	-0.87541	-0.00049881	0.16184	9.2217E-05	-0.71357	-0.00040659	569.798669986008	78.753	1.0364	78.753	78.082	79.119	0					41	24	2	0	0	0	0.024374	1	9671	9671		32.812	0	1	188410	+		13435	35023	9435	9453	14788	14788					0.01857127988978391
EPFSLSIPPS	10	Unmodified	_EPFSLSIPPS_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2787475585938	2	537.279315	1072.54408	-0.40621	-0.00021825	-0.99623	-0.00053525	-1.4024	-0.0007535	537.2787620259766	24.599	0.72274	24.677	24.41	25.132	0.078344					35	15	4	0	0	0	0.67706	1	1046	1046		68.787	10.005	1	745280			13436	18305	9436	9454	14789	14789					0.010706170035291507
EPFWHHKYHEA	11	Unmodified	_EPFWHHKYHEA_					0	0	0			REV__ENSG00000133639|ENST00000256015|BTG1	REV__ENSG00000133639|ENST00000256015|BTG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.8153381347656	3	494.230071	1479.66838	0.38702	0.00019128	0.059617	2.9465E-05	0.44664	0.00022074	494.23019552483896	21.114	0.34352	20.92	20.781	21.124	-0.19402					14	6	3	0	0	0	0.024746	1	610	610		33.039	3.7944	1	31928	+		13437	23383	9437	9455	14790	14790					-0.0522649245640423
EPGAGLRLL	9	Unmodified	_EPGAGLRLL_					0	0	0		nc|ENSG00000130244|Q17RN3-2|FAM98C;ENSG00000130244|ENST00000252530|FAM98C	nc|ENSG00000130244|Q17RN3-2|FAM98C	nc|ENSG00000130244|Q17RN3-2|FAM98C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.27667236328125	2	463.276909	924.539266	0.51189	0.00023714	-0.6685	-0.0003097	-0.15661	-7.2555E-05	463.2764895748961	59.352	0.75575	59.171	58.831	59.587	-0.18134					41	18	3	0	0	0	0.18915	1	6572	6572		90.777	2.1338	1	1132300			13438	4402	9438	9456	14791	14791					0.07397777651419801
EPGALTQL	8	Unmodified	_EPGALTQL_					0	0	0			REV__ENST00000244769.8_1_6:16303126-16303444:-|nuORF	REV__ENST00000244769.8_1_6:16303126-16303444:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.8765869140625	2	414.726718	827.438883	-0.18883	-7.8312E-05	-0.78698	-0.00032638	-0.97581	-0.00040469	414.7267448456939	29.674	0.48747	29.677	29.469	29.956	0.0031357					16	11	2	0	0	0	0.027866	1	1857	1857		17.365	0	1	176330	+		13439	29468	9439	9457	14792	14792					0.018261205977637474
EPGARQLVD	9	Unmodified	_EPGARQLVD_					0	0	0			REV__nc|ENSG00000146858|Q96H79-2|ZC3HAV1L	REV__nc|ENSG00000146858|Q96H79-2|ZC3HAV1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.31072998046875	2	492.759081	983.503609	-0.75944	-0.00037422	4.3503	0.0021436	3.5908	0.0017694	492.7613840631338	61.682	0.5989	61.504	61.245	61.843	-0.17781					23	14	2	0	0	0	0.024323	1	6947	6947		35.618	20.753	1	161460	+		13440	24518	9440	9458	14793	14793					0.011196954037586693
EPGATAFR	8	Unmodified	_EPGATAFR_					0	0	0		ENSG00000115325|ENST00000233668|DOK1;ENST00000474924.5_1_2:74781881-74782730:+|nuORF;nc|ENSG00000115325|Q99704-2|DOK1;DOK1|p.D363*|1|0.14|ENSG00000115325|chr2:74556753-74556754|-/T|frameshift_variant	ENSG00000115325|ENST00000233668|DOK1	ENSG00000115325|ENST00000233668|DOK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2633056640625	2	424.716685	847.418816	0.1032	4.383E-05	0.76795	0.00032616	0.87115	0.00036999	424.7168348197275	45.996	0.27072	46.047	45.932	46.203	0.051395					10	7	2	0	0	0	0.027866	1	4465	4465		35.618	3.6634	1	94271			13441	3435	9441	9459	14794	14794					-0.010996303421848097
EPGATAFR	8	Unmodified	_EPGATAFR_					0	0	0		ENSG00000115325|ENST00000233668|DOK1;ENST00000474924.5_1_2:74781881-74782730:+|nuORF;nc|ENSG00000115325|Q99704-2|DOK1;DOK1|p.D363*|1|0.14|ENSG00000115325|chr2:74556753-74556754|-/T|frameshift_variant	ENSG00000115325|ENST00000233668|DOK1	ENSG00000115325|ENST00000233668|DOK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	424.716685	847.418816	0.28139	0.00011951	0.013288	5.6435E-06	0.29468	0.00012515	424.716586167628	46.291	0.29836	46.195	45.961	46.259	-0.096649	0.032853	4.5927E-05	NaN	44.117	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81055			13442	3435	9441	9459							-0.010996303421848097
EPGATAFR	8	Unmodified	_EPGATAFR_					0	0	0		ENSG00000115325|ENST00000233668|DOK1;ENST00000474924.5_1_2:74781881-74782730:+|nuORF;nc|ENSG00000115325|Q99704-2|DOK1;DOK1|p.D363*|1|0.14|ENSG00000115325|chr2:74556753-74556754|-/T|frameshift_variant	ENSG00000115325|ENST00000233668|DOK1	ENSG00000115325|ENST00000233668|DOK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	424.716685	847.418816	0.031032	1.318E-05	-0.31188	-0.00013246	-0.28085	-0.00011928	424.7165632723247	46.493	0.3789	46.232	46.044	46.423	-0.26118	0.070241	-0.00023028	NaN	44.117	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91868			13443	3435	9441	9459							-0.010996303421848097
EPGATAFR	8	Unmodified	_EPGATAFR_					0	0	0		ENSG00000115325|ENST00000233668|DOK1;ENST00000474924.5_1_2:74781881-74782730:+|nuORF;nc|ENSG00000115325|Q99704-2|DOK1;DOK1|p.D363*|1|0.14|ENSG00000115325|chr2:74556753-74556754|-/T|frameshift_variant	ENSG00000115325|ENST00000233668|DOK1	ENSG00000115325|ENST00000233668|DOK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	424.716685	847.418816	-0.34481	-0.00014645	-0.036392	-1.5456E-05	-0.3812	-0.0001619	424.7166614489132	46.376	0.40652	46.173	45.93	46.336	-0.20226	0.011623	3.7275E-06	NaN	44.117	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159520			13444	3435	9441	9459							-0.010996303421848097
EPGCMTGDAVY	11	Unmodified	_EPGCMTGDAVY_					0	0	0			REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.7279663085938	2	571.728274	1141.442	0.4047	0.00023138	-0.85479	-0.00048871	-0.45009	-0.00025733	571.7277714030618	51.661	1.0013	51.543	51.202	52.203	-0.11876					77	26	4	0	0	0	0.98904	1	5311	5311		39.253	0.44669	1	4679300	+		13445	26278	9442	9460	14795	14795					-0.12306740402050309
EPGCMTGDAVY	11	Unmodified	_EPGCMTGDAVY_					0	0	0			REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.7279052734375	2	571.728274	1141.442	-1.7971	-0.0010275	1.2677	0.00072478	-0.52943	-0.00030269	571.7289084920742	51.951	1.1507	51.682	51.321	52.471	-0.26903					88	30	4	0	0	0	0.98904	1	5351	5351		39.253	1.4413	1	4356600	+		13446	26278	9442	9460	14796	14796					-0.12306740402050309
EPGCRDYV	8	Unmodified	_EPGCRDYV_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3-1|USP25	REV__nc|ENSG00000155313|Q9UHP3-1|USP25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.2845153808594	2	469.70546	937.396366	0.56418	0.000265	2.6807	0.0012591	3.2449	0.0015241	469.7065518864435	51.275	0.36734	51.275	50.992	51.359	0					12	9	2	0	0	0	0.027866	1	5379	5379		47.916	12.297	1	89471	+		13447	25002	9443	9461	14797	14797					-0.07483597802126951
EPGCRDYV	8	Unmodified	_EPGCRDYV_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3-1|USP25	REV__nc|ENSG00000155313|Q9UHP3-1|USP25	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	469.70546	937.396366	-0.36231	-0.00017018	4.2651	0.0020033	3.9028	0.0018332	469.7071982610958	51.125	0.3336	51.212	51.077	51.411	0.087006	-0.070878	0.00044574	NaN	38.806	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96734	+		13448	25002	9443	9461							-0.07483597802126951
EPGCRDYV	8	Unmodified	_EPGCRDYV_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3-1|USP25	REV__nc|ENSG00000155313|Q9UHP3-1|USP25	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.70546	937.396366	-0.83424	-0.00039185	4.6919	0.0022038	3.8577	0.001812	469.70748528896905	51.633	0.23545	51.361	51.2	51.435	-0.27207	0.078535	0.00084668	NaN	38.806	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52472	+		13449	25002	9443	9461							-0.07483597802126951
EPGCWKIQ	8	Unmodified	_EPGCWKIQ_					0	0	0		ENST00000373857.7_1_1:28476271-28476457:-|nuORF	ENST00000373857.7_1_1:28476271-28476457:-|nuORF	ENST00000373857.7_1_1:28476271-28476457:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2884521484375	2	480.73402	959.453487	-0.36195	-0.000174	-3.351	-0.0016109	-3.7129	-0.0017849	480.73205876716713	62.917	0.32863	62.917	62.651	62.98	0					11	7	2	0	0	0	0.027866	1	7343	7343		7.6903	0	1	88429			13450	13095	9444	9462	14798	14798					-0.02786130525748831
EPGEAPEVEQ	10	Unmodified	_EPGEAPEVEQ_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.833740234375	2	542.743293	1083.47203	-0.21644	-0.00011747	2.5073	0.0013608	2.2908	0.0012433	542.7445323293122	70.756	0.53574	70.542	70.377	70.913	-0.21425					20	13	2	0	0	0	0.03519	1	8280	8280		14.137	0	1	627080	+		13451	21377	9445	9463	14799	14799					-0.0663634214083686
EPGEGKFGPM	10	Unmodified	_EPGEGKFGPM_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.7855834960938	2	524.742042	1047.46953	-0.12189	-6.3961E-05	3.7386	0.0019618	3.6167	0.0018978	524.744050429428	27.476	0.33004	27.319	27.104	27.434	-0.15664					12	7	2	0	0	0	0.03519	1	1474	1474		25.574	3.6142	1	115430	+		13452	22797	9446	9464	14800	14800					-0.0523046907949265
EPGEISPPVY	10	Unmodified	_EPGEISPPVY_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2675170898438	2	544.268947	1086.52334	-0.054753	-2.98E-05	0.21031	0.00011447	0.15556	8.4666E-05	544.2691593976402	58.553	1.4057	58.372	58.029	59.435	-0.18133					69	29	5	0	0	0	0.941	1	6450	6450		51.335	7.2187	1	2072900	+		13453	24228	9447	9465	14801	14801					-0.01645973376139409
EPGETIVEA	9	Unmodified	_EPGETIVEA_					0	0	0		ENSG00000275074|ENST00000611621|NUDT18	ENSG00000275074|ENST00000611621|NUDT18	ENSG00000275074|ENST00000611621|NUDT18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7853088378906	2	472.732197	943.449842	0.059817	2.8277E-05	2.8214	0.0013338	2.8812	0.001362	472.7343440419807	54.635	0.37653	54.635	54.492	54.869	0					13	10	2	0	0	0	0.024436	1	5981	5981		30.504	0	1	245080			13454	11036	9448	9466	14802	14802					-0.02414521818616322
EPGFQPFVL	9	Unmodified	_EPGFQPFVL_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7997436523438	2	517.271293	1032.52803	-0.14848	-7.6806E-05	0.13121	6.7874E-05	-0.017269	-8.9327E-06	517.7726100075214	104.72	0.40178	104.72	104.47	104.87	0					19	11	2	0	0	0	0.024436	1	13429	13429		47.916	0	1	41727			13455	1505	9449	9467	14803	14803					0.013069555572883473
EPGFRRRE	8	Unmodified	_EPGFRRRE_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000524474.5_1_11:720617-722550:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.799560546875	2	523.778139	1045.54173	0.3703	0.00019396	-1.6793	-0.0008796	-1.309	-0.00068564	523.7776905632171	19.265	0.29527	19.265	19.119	19.414	0					11	5	3	0	0	0	0.027866	1	402	402		23.042	0	1	23848			13456	8709	9450	9468	14804	14804					0.020776261090986736
EPGGCIDFQTE	11	Unmodified	_EPGGCIDFQTE_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	598.8181762695312	2	598.250428	1194.4863	-0.31073	-0.0001859	-1.9062	-0.0011404	-2.217	-0.0013263	598.2485970328817	74.772	0.50279	74.513	74.158	74.661	-0.25887					17	11	2	0	0	0	0.024735	1	9085	9085		19.263	0.15916	1	87030			13457	7821	9451	9469	14805	14805					-0.103160129842081
EPGGPVWVQ	9	Unmodified	_EPGGPVWVQ_					0	0	0		ENST00000497548.5_1_17:19459198-19470111:+|nuORF	ENST00000497548.5_1_17:19459198-19470111:+|nuORF	ENST00000497548.5_1_17:19459198-19470111:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2662048339844	2	484.745442	967.476331	0.084705	4.106E-05	-1.0742	-0.00052074	-0.98955	-0.00047968	484.7452207822915	67.572	0.31545	67.572	67.367	67.682	0					9	7	2	0	0	0	0.024457	1	8088	8088		29.15	3.6994	1	54606			13458	15597	9452	9470	14806	14806					-0.008707881366262882
EPGGSPRIR	9	Unmodified	_EPGGSPRIR_					0	0	0		ENST00000455707.1_1_2:120933280-120974116:-|nuORF	ENST00000455707.1_1_2:120933280-120974116:-|nuORF	ENST00000455707.1_1_2:120933280-120974116:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.25164794921875	2	484.76724	967.519927	-0.46277	-0.00022434	0.65899	0.00031945	0.19621	9.5118E-05	484.76730113267104	21.844	0.84997	21.754	21.452	22.302	-0.090092					28	17	2	0	0	0	0.022832	1	722	722		82.241	18.934	1	647210			13459	14587	9453	9471	14807	14807					0.034868213605250276
EPGHEEVSW	9	Unmodified	_EPGHEEVSW_					0	0	0		nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2;ENST00000575944.1_1_17:1519839-1531078:-|nuORF	nc|ENSG00000167703|Q8N370-2|SLC43A2	nc|ENSG00000167703|Q8N370-2|SLC43A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8004150390625	2	535.232896	1068.45124	-0.92514	-0.00049517	-3.1604	-0.0016915	-4.0855	-0.0021867	535.230810816925	55.151	0.3513	55.005	54.837	55.188	-0.14609					16	9	2	0	0	0	0.024381	1	5918	5918		37.159	9.2769	1	180150			13460	7726	9454	9472	14808	14808					-0.08024887729857255
EPGIKTKLL	9	Unmodified	_EPGIKTKLL_					0	0	0		ENST00000517951.5_1_5:156822576-156936463:-|nuORF	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7637634277344	2	499.815867	997.617182	0.0044296	2.214E-06	-1.1583	-0.00057894	-1.1539	-0.00057672	499.8157218245138	99.565	0.5611	99.576	99.223	99.785	0.010231					23	12	3	0	0	0	0.024457	1	12697	12697		29.15	0	1	75471			13461	15921	9455	9473	14809	14809					0.11827790516804271
EPGIMAHDL	9	Unmodified	_EPGIMAHDL_					0	0	0			REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7952880859375	2	491.73676	981.458967	-0.51004	-0.0002508	0.41492	0.00020403	-0.095118	-4.6773E-05	491.7371255590925	48.605	0.24621	48.452	48.329	48.575	-0.15277					9	6	2	0	0	0	0.02435	1	4954	4954		26.693	10.22	1	97803	+		13462	23320	9456	9474	14810	14810					-0.03250451733936188
EPGKEPPTP	9	Unmodified	_EPGKEPPTP_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.77734375	2	476.242732	950.470912	0.68275	0.00032516	1.778	0.00084678	2.4608	0.0011719	476.24367809297644	69.183	0.41202	69.183	68.861	69.273	0					18	10	2	0	0	0	0.024418	1	8282	8282		37.812	4.9991	1	113770			13463	1535	9457	9475	14811	14811					-0.006305117190890996
EPGKEPPTP	9	Unmodified	_EPGKEPPTP_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.242732	950.470912	0.88681	0.00042233	1.8831	0.00089682	2.7699	0.0013192	476.24342505231726	69.44	0.37806	69.147	68.97	69.348	-0.29291	-0.079211	-0.0001005	NaN	36.447	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118680			13464	1535	9457	9475							-0.006305117190890996
EPGKEPPTP	9	Unmodified	_EPGKEPPTP_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.242732	950.470912	-0.29293	-0.0001395	1.6898	0.00080474	1.3969	0.00066524	476.24374655499196	69.596	0.37261	69.329	69.121	69.493	-0.26725	0.10279	-0.00028465	NaN	36.447	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157590			13465	1535	9457	9475							-0.006305117190890996
EPGKEPPTP	9	Unmodified	_EPGKEPPTP_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.242732	950.470912	-0.1598	-7.6102E-05	1.3753	0.00065498	1.2155	0.00057888	476.2434731920493	69.468	0.20372	69.245	69.103	69.307	-0.22245	0.019134	-0.00058418	NaN	36.447	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52212			13466	1535	9457	9475							-0.006305117190890996
EPGKVAVES	9	Unmodified	_EPGKVAVES_					0	0	0		ENST00000481743.1_1_10:8095624-8097282:+|nuORF	ENST00000481743.1_1_10:8095624-8097282:+|nuORF	ENST00000481743.1_1_10:8095624-8097282:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7558898925781	2	458.242732	914.470912	-0.76946	-0.0003526	1.6724	0.00076637	0.90294	0.00041377	458.24362756411534	20.679	0.38389	20.679	20.516	20.9	0					10	7	2	0	0	0	0.023635	1	563	563		66.429	5.4573	1	36334			13467	15234	9458	9476	14812	14812					0.010254882809135779
EPGLAQLLV	9	Unmodified	_EPGLAQLLV_					0	0	0		CREBBP-TRAP1|1|fusion;CREBBP-TRAP1|3|fusion;nc|ENSG00000126602|Q12931-2|TRAP1;CREBBP-TRAP1|2|fusion;ENSG00000126602|ENST00000246957|TRAP1	CREBBP-TRAP1|1|fusion	CREBBP-TRAP1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2689208984375	2	470.279118	938.543683	0.2024	9.5186E-05	-0.3684	-0.00017325	-0.166	-7.8067E-05	470.2790962948063	78.067	0.73671	78.067	77.752	78.489	0					31	17	3	0	0	0	0.024292	1	9708	9708		32.812	2.3088	1	210410			13468	585	9459	9477	14813	14813					0.07195242074351427
EPGLLETK	8	Unmodified	_EPGLLETK_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7579345703125	2	443.74765	885.480748	-0.16106	-7.147E-05	0.46269	0.00020532	0.30163	0.00013385	443.7477621712741	79.632	0.70605	79.651	79.354	80.06	0.018677					35	16	3	0	0	0	0.027866	1	9805	9805		7.6903	0	1	507730			13469	1429	9460	9478	14814	14814					0.03342676286297319
EPGLLETK	8	Unmodified	_EPGLLETK_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.74765	885.480748	-0.22032	-9.7766E-05	0.68226	0.00030275	0.46194	0.00020498	443.7477702168627	79.623	0.71257	79.623	79.323	80.036	0	0.016518	-8.273E-05	NaN	7.6903	36	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462570			13470	1429	9460	9478							0.03342676286297319
EPGLLETK	8	Unmodified	_EPGLLETK_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.74765	885.480748	-0.91141	-0.00040444	1.1467	0.00050884	0.23528	0.00010441	443.74805785324827	79.803	0.71225	79.631	79.275	79.987	-0.17226	0.023914	0.00032945	NaN	7.6903	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442780			13471	1429	9460	9478							0.03342676286297319
EPGLLETK	8	Unmodified	_EPGLLETK_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.74765	885.480748	0.38959	0.00017288	0.34286	0.00015214	0.73245	0.00032502	443.7477083426809	79.673	0.37552	79.523	79.321	79.696	-0.15051	-0.084278	-0.00038394	NaN	7.6903	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38046			13472	1429	9460	9478							0.03342676286297319
EPGLPTPF	8	Unmodified	_EPGLPTPF_					0	0	0			REV__ENSG00000158615|ENST00000367188|PPP1R15B	REV__ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7379150390625	2	429.223811	856.433069	0.016815	7.2172E-06	-4.0523	-0.0017394	-4.0355	-0.0017321	429.22184564304126	39.378	0.76657	39.378	39.076	39.843	0					39	21	3	0	0	0	0.027866	1	3428	3428		33.516	8.0654	1	439150	+		13473	25207	9461	9479	14815	14815					-0.0008897791390154453
EPGNLAIVF	9	Unmodified	_EPGNLAIVF_					0	0	0		ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENST00000401578.2_1_6:80775088-80776231:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7500915527344	2	480.263468	958.512382	-0.8049	-0.00038657	-2.2892	-0.0010994	-3.0941	-0.001486	480.2616438418825	30.096	1.1864	30.096	29.652	30.838	0					54	28	4	0	0	0	0.024262	1	1955	1955		38.806	16.846	1	909780			13474	13672	9462	9480	14816	14816					0.031466690402339736
EPGNLAIVF	9	Unmodified	_EPGNLAIVF_					0	0	0		ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENST00000401578.2_1_6:80775088-80776231:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.263468	958.512382	0.0023657	1.1362E-06	-0.50364	-0.00024188	-0.50127	-0.00024074	480.26321289412556	30.026	0.46657	29.782	29.612	30.079	-0.24415	-0.11842	0.0015287	NaN	30.504	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105390			13475	13672	9462	9480							0.031466690402339736
EPGNLAIVF	9	Unmodified	_EPGNLAIVF_					0	0	0		ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENST00000401578.2_1_6:80775088-80776231:-|nuORF	ENST00000401578.2_1_6:80775088-80776231:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.263468	958.512382	-0.91631	-0.00044007	0.032627	1.5669E-05	-0.88369	-0.0004244	480.2632902723462	29.873	0.51286	29.7	29.533	30.046	-0.17258	-0.19992	0.0020438	NaN	30.504	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71531			13476	13672	9462	9480							0.031466690402339736
EPGNTSTCDK	10	Unmodified	_EPGNTSTCDK_					0	0	0			REV__SETX|p.R729T|1|0.07|ENSG00000107290|chr9:132329412-132329412|C/G|missense_variant	REV__SETX|p.R729T|1|0.07|ENSG00000107290|chr9:132329412-132329412|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2875366210938	2	526.221671	1050.42879	0.13239	6.9668E-05	-0.73441	-0.00038646	-0.60202	-0.0003168	526.2210507950022	68.245	0.73262	67.99	67.74	68.472	-0.25516					37	17	3	0	0	0	0.03519	1	7901	7901		17.468	0.99486	1	499690	+		13477	37480	9463	9481	14817	14817					-0.09440855189791364
EPGPALAWLL	10	Unmodified	_EPGPALAWLL_					0	0	0		nc|ENSG00000187123|Q86Y78-2|LYPD6;ENSG00000187123|ENST00000334166|LYPD6	nc|ENSG00000187123|Q86Y78-2|LYPD6	nc|ENSG00000187123|Q86Y78-2|LYPD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.234619140625	2	533.800217	1065.58588	-0.26783	-0.00014297	-3.1362	-0.0016741	-3.4041	-0.0018171	533.7983259322439	58.361	0.69541	58.361	57.872	58.568	0					27	18	2	0	0	0	0.03519	1	6617	6617		38.806	0	1	251510			13478	9610	9464	9482	14818	14818					0.055712174827021954
EPGPALAWLL	10	Unmodified	_EPGPALAWLL_					0	0	0		nc|ENSG00000187123|Q86Y78-2|LYPD6;ENSG00000187123|ENST00000334166|LYPD6	nc|ENSG00000187123|Q86Y78-2|LYPD6	nc|ENSG00000187123|Q86Y78-2|LYPD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.235595703125	2	533.800217	1065.58588	-0.78258	-0.00041774	-2.4659	-0.0013163	-3.2484	-0.001734	533.7987653558524	57.729	0.72601	57.825	57.687	58.413	0.09531					28	19	2	0	0	0	0.03519	1	6516	6516		31.955	17.09	1	624010			13479	9610	9464	9482	14819	14819					0.055712174827021954
EPGPLGKDP	9	Unmodified	_EPGPLGKDP_					0	0	0			REV__ENSG00000006042|ENST00000579849|TMEM98	REV__ENSG00000006042|ENST00000579849|TMEM98	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.2445373535156	2	455.23745	908.460347	0.48569	0.0002211	-1.1699	-0.00053256	-0.68417	-0.00031146	455.23681456841655	102.94	0.65137	102.81	102.49	103.14	-0.12724					36	15	3	0	0	0	0.87448	1	12823	12823		34.173	5.023	1	1184800	+		13480	19820	9465	9483	14820	14820					0.002455056264693667
EPGPRRFHFNF	11	Unmodified	_EPGPRRFHFNF_					0	0	0			REV__FRS3|p.D403H|1|0.16|ENSG00000137218|chr6:41770891-41770891|C/G|missense_variant	REV__FRS3|p.D403H|1|0.16|ENSG00000137218|chr6:41770891-41770891|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.26019287109375	3	468.570427	1402.68945	0.82692	0.00038747	1.4614	0.00068478	2.2883	0.0010723	468.57108860302606	24.225	0.27137	24.303	24.23	24.501	0.078346					11	5	3	0	0	0	0.024748	1	997	997		24.232	5.7008	1	24394	+		13481	36050	9466	9484	14821	14821					0.004215176430761858
EPGPRRFHFNF	11	Unmodified	_EPGPRRFHFNF_					0	0	0			REV__FRS3|p.D403H|1|0.16|ENSG00000137218|chr6:41770891-41770891|C/G|missense_variant	REV__FRS3|p.D403H|1|0.16|ENSG00000137218|chr6:41770891-41770891|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	468.570427	1402.68945	-0.33878	-0.00015874	-0.19806	-9.2804E-05	-0.53684	-0.00025155	468.5714536804932	24.398	0.3089	24.398	24.209	24.518	0	0.050411	-0.0028085	NaN	24.232	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34366	+		13482	36050	9466	9484							0.004215176430761858
EPGPRRFHFNF	11	Unmodified	_EPGPRRFHFNF_					0	0	0			REV__FRS3|p.D403H|1|0.16|ENSG00000137218|chr6:41770891-41770891|C/G|missense_variant	REV__FRS3|p.D403H|1|0.16|ENSG00000137218|chr6:41770891-41770891|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	468.570427	1402.68945	-0.85492	-0.00040059	3.377	0.0015824	2.5221	0.0011818	468.5716907528847	24.388	0.49074	24.341	24.133	24.623	-0.047148	-0.0060391	0.002217	NaN	24.232	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30244	+		13483	36050	9466	9484							0.004215176430761858
EPGQAEEYPD	10	Unmodified	_EPGQAEEYPD_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2904663085938	2	567.732926	1133.4513	-1.0758	-0.00061075	1.2782	0.00072565	0.20239	0.00011491	567.7339121974879	59.672	0.51703	59.757	59.501	60.018	0.085686					20	13	2	0	0	0	0.03519	1	6711	6711		19.104	0	1	341350	+		13484	26605	9467	9485	14822	14822					-0.11008932520508097
EPGQDLEA	8	Unmodified	_EPGQDLEA_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	429.7379455566406	2	429.695615	857.376677	-0.48251	-0.00020733	0.224	9.6251E-05	-0.25852	-0.00011108	429.6944487079908	39.898	0.13737	39.922	39.84	39.978	0.023727					5	3	2	0	0	0	0.027866	1	3406	3406		25.45	1.2474	1	37441			13485	5936	9468	9486	14823	14823					-0.0577165054123725
EPGQGWVPF	9	Unmodified	_EPGQGWVPF_					0	0	0			REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF	REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7882080078125	2	508.745442	1015.47633	-0.045968	-2.3386E-05	3.3564	0.0017075	3.3104	0.0016842	508.74678509727767	19.712	0.2799	19.712	19.6	19.88	0					8	5	2	0	0	0	0.024436	1	467	467		47.916	1.9434	1	14921	+		13486	31209	9469	9487	14824	14824					-0.030787881366109104
EPGREPVLY	9	Unmodified	_EPGREPVLY_					0	0	0			REV__nc|ENSG00000160282|O95954-3|FTCD	REV__nc|ENSG00000160282|O95954-3|FTCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2769165039062	2	530.277106	1058.53966	-0.25058	-0.00013288	-0.24157	-0.0001281	-0.49215	-0.00026097	530.2770694237099	58.744	1.1698	58.562	58.065	59.235	-0.18134					82	28	5	0	0	0	0.33245	2	6467	6467;6490		71.296	5.4925	1	14915000	+		13487	25304	9470	9488	14825;14826	14825					0.01273152580643
EPGREPVLY	9	Unmodified	_EPGREPVLY_					0	0	0			REV__nc|ENSG00000160282|O95954-3|FTCD	REV__nc|ENSG00000160282|O95954-3|FTCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2778930664062	2	530.277106	1058.53966	-0.11633	-6.1687E-05	0.63456	0.00033649	0.51823	0.0002748	530.277142079813	58.032	0.98711	57.799	57.237	58.224	-0.23363					70	24	5	0	0	0	0.33245	1	6334	6334		71.296	2.2027	1	13451000	+		13488	25304	9470	9488	14827	14827					0.01273152580643
EPGREPVLY	9	Unmodified	_EPGREPVLY_					0	0	0			REV__nc|ENSG00000160282|O95954-3|FTCD	REV__nc|ENSG00000160282|O95954-3|FTCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2769165039062	2	530.277106	1058.53966	0.59699	0.00031657	-1.188	-0.00062999	-0.59106	-0.00031342	530.2766320210427	58.835	1.0862	58.593	58.173	59.259	-0.24165					81	26	5	0	0	0	0.27161	2	6441	6441;6500		79.451	5.4763	1	15720000	+		13489	25304	9470	9488	14828;14829	14828					0.01273152580643
EPGRGLRPR	9	Unmodified	_EPGRGLRPR_					0	0	0		ENST00000577820.5_1_19:18545725-18548921:-|nuORF	ENST00000577820.5_1_19:18545725-18548921:-|nuORF	ENST00000577820.5_1_19:18545725-18548921:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2642822265625	2	519.301781	1036.58901	-0.22338	-0.000116	1.2231	0.00063514	0.99969	0.00051914	519.3022272775161	55.735	0.87997	55.579	55.404	56.284	-0.15601					47	23	3	0	0	0	0.024447	1	6226	6226		40.778	15.204	1	724610			13490	17121	9471	9489	14830	14830					0.07217905380093725
EPGRLFGR	8	Unmodified	_EPGRLFGR_					0	0	0			REV__ENST00000369461.3_1_1:117664639-117664780:-|nuORF	REV__ENST00000369461.3_1_1:117664639-117664780:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7538146972656	2	466.259051	930.503549	-1.4538	-0.00067785	0.63706	0.00029703	-0.81676	-0.00038082	466.25955503148117	38.028	0.90864	38.028	37.486	38.395	0					33	26	2	0	0	0	0.027866	1	3075	3075		31.955	0	1	541990	+		13491	31090	9472	9490	14831	14831					0.03551740194438935
EPGSEGPDLT	10	Unmodified	_EPGSEGPDLT_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7779235839844	2	501.224736	1000.43492	1.7979	0.00090116	-1.1498	-0.0005763	0.64813	0.00032486	501.2239803909974	63.855	0.28736	63.901	63.794	64.081	0.045502					12	7	2	0	0	0	0.03519	1	7416	7416		19.997	0	1	100120			13492	8804	9473	9491	14832	14832					-0.06528013686613576
EPGSPALAR	9	Unmodified	_EPGSPALAR_					0	0	0		ENST00000525598.1_1_11:118982915-118984090:+|nuORF	ENST00000525598.1_1_11:118982915-118984090:+|nuORF	ENST00000525598.1_1_11:118982915-118984090:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.28509521484375	2	449.243067	896.47158	-0.61962	-0.00027836	1.1868	0.00053316	0.56718	0.0002548	449.24339671557595	34.755	1.3439	34.806	34.005	35.349	0.050255					82	34	3	0	0	0	0.024292	1	2563	2563		32.812	0	1	731170			13493	16098	9474	9492	14833	14833					0.019203277206202074
EPGTPPSSPL	10	Unmodified	_EPGTPPSSPL_					0	0	0		nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF;UNG|p.V92Rfs*51|1|0.1|ENSG00000076248|chr12:109098569-109098570|-/C|frameshift_variant	nc|ENSG00000076248|P13051-2|UNG	nc|ENSG00000076248|P13051-2|UNG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.247802734375	2	491.248015	980.481476	0.015082	7.4089E-06	-0.0094314	-4.6331E-06	0.0056504	2.7758E-06	491.24785099880313	68.387	0.83575	68.387	68.102	68.938	0					52	21	4	0	0	0	0.85955	1	8204	8204		56.721	7.2795	1	2317300			13494	1579	9475	9493	14834	14834					-0.009545290646428839
EPGVRLAFL	9	Unmodified	_EPGVRLAFL_					0	0	0		ENST00000433831.5_1_22:20940997-20941165:+|nuORF	ENST00000433831.5_1_22:20940997-20941165:+|nuORF	ENST00000433831.5_1_22:20940997-20941165:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2772521972656	2	501.292559	1000.57057	-0.21231	-0.00010643	-4.3083	-0.0021597	-4.5206	-0.0022661	501.2904746257812	96.711	1.2801	96.711	95.778	97.058	0					41	29	2	0	0	0	0.024457	1	12308	12308		29.15	1.2673	1	191750			13495	14235	9476	9494	14835	14835					0.07030350685522535
EPGVWKVGE	9	Unmodified	_EPGVWKVGE_					0	0	0		nc|ENSG00000269220|Q8N1L1|LINC00528	nc|ENSG00000269220|Q8N1L1|LINC00528	nc|ENSG00000269220|Q8N1L1|LINC00528	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.75775146484375	2	500.758549	999.502546	-0.20783	-0.00010407	-0.99295	-0.00049723	-1.2008	-0.0006013	500.75847477864414	70.005	0.73927	69.782	69.348	70.087	-0.22245					57	17	5	0	0	0	0.20967	1	8144	8144		87.754	5.5138	1	1954900			13496	18791	9477	9495	14836	14836					0.002774810348682877
EPGYSEGT	8	Unmodified	_EPGYSEGT_					0	0	0		nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;COL4A3|p.G1491Afs*38|1|0.78|ENSG00000169031|chr2:227308907-227308907|G/-|frameshift_variant	nc|ENSG00000169031|Q01955-2|COL4A3	nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.90234375	2	420.174515	838.334478	1.2591	0.00052905	1.4163	0.00059508	2.6754	0.0011241	420.17504987337725	110.6	1.2227	110.6	109.96	111.18	0					65	40	2	0	0	0	0.027866	1	13991	13991		30.504	7.4612	1	40415			13497	7893	9478	9496	14837	14837					-0.0911562594960742
EPGYSEGT	8	Unmodified	_EPGYSEGT_					0	0	0		nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;COL4A3|p.G1491Afs*38|1|0.78|ENSG00000169031|chr2:227308907-227308907|G/-|frameshift_variant	nc|ENSG00000169031|Q01955-2|COL4A3	nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	420.174515	838.334478	0.22414	9.4177E-05	2.3525	0.00098844	2.5766	0.0010826	420.17544690494015	110.72	0.6723	110.71	110.56	111.23	-0.011299	0.055401	0.00054294	NaN	30.504	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34047			13498	7893	9478	9496							-0.0911562594960742
EPHGAWWAA	9	Unmodified	_EPHGAWWAA_					0	0	0		ENST00000339852.4_1_19:39691114-39691434:+|nuORF	ENST00000339852.4_1_19:39691114-39691434:+|nuORF	ENST00000339852.4_1_19:39691114-39691434:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.25341796875	2	512.735409	1023.45626	-0.64471	-0.00033056	-0.84702	-0.00043429	-1.4917	-0.00076486	512.7356511920811	54.303	0.23957	54.167	54.087	54.326	-0.13617					9	6	2	0	0	0	0.024412	1	5752	5752		31.955	0	1	240250			13499	12463	9479	9497	14838	14838					-0.054525390765888915
EPHGPPPSDTM	11	Unmodified	_EPHGPPPSDTM_					0	0	0			REV__ENST00000406555.7_1_9:139557386-139563011:+|nuORF	REV__ENST00000406555.7_1_9:139557386-139563011:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.3480834960938	2	582.753138	1163.49172	0.60932	0.00035509	1.1465	0.00066814	1.7558	0.0010232	582.7537315810398	18.493	0.24792	18.336	18.247	18.495	-0.15637					5	4	2	0	0	0	0.024762	1	326	326		24.519	0	1	9741.6	+		13500	31922	9480	9498	14839	14839					-0.08348289401760667
EPHGSLNL	8	Unmodified	_EPHGSLNL_					0	0	0			REV__ENSG00000078070|ENST00000265594|MCCC1	REV__ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.74517822265625	2	433.721967	865.429381	0.042499	1.8433E-05	-0.15882	-6.8884E-05	-0.11632	-5.0451E-05	433.72186798847406	28.065	0.67175	27.913	27.649	28.321	-0.15195					37	16	4	0	0	0	0.027866	1	1570	1570		40.573	3.4135	1	723640	+		13501	20602	9481	9499	14840	14840					-0.00871647687768018
EPHLRLNHRLL	11	Unmodified	_EPHLRLNHRLL_					0	0	0		ENST00000426654.6_1_16:69727998-69728070:+|nuORF	ENST00000426654.6_1_16:69727998-69728070:+|nuORF	ENST00000426654.6_1_16:69727998-69728070:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	466.60772705078125	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.529	1	97.393	96.893	97.893	-0.1367								0	0	0	1.3793	1	12059	12059		21.78	3.2494	1				13502	14093	9482	9500	14841	14841					0.12262041493931974
EPHNQRRL	8	Unmodified	_EPHNQRRL_					0	0	0			REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;REV__ENSG00000005339|ENST00000262367|CREBBP	REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3035888671875	2	525.283589	1048.55262	0.027262	1.432E-05	3.0497	0.001602	3.077	0.0016163	525.285062366983	65.823	0.67682	65.853	65.482	66.159	0.030106					35	17	4	0	0	0	0.027866	1	7677	7677		24.203	0	1	1232500	+		13503	21108;19803	9483	9501	14842	14842					0.03029028483365437
EPHQADEATW	10	Unmodified	_EPHQADEATW_					0	0	0		ENST00000542513.1_1_12:11047683-11047866:-|nuORF	ENST00000542513.1_1_12:11047683-11047866:-|nuORF	ENST00000542513.1_1_12:11047683-11047866:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.2548217773438	2	592.25436	1182.49417	-0.52581	-0.00031141	1.6308	0.00096584	1.105	0.00065442	592.2552343204906	52.844	0.93723	52.717	52.391	53.329	-0.12705					56	23	3	0	0	0	0.74632	2	5504	5504;5516		64.207	4.089	1	1199600			13504	16458	9484	9502	14843;14844	14843					-0.08978117672427288
EPHQADEATW	10	Unmodified	_EPHQADEATW_					0	0	0		ENST00000542513.1_1_12:11047683-11047866:-|nuORF	ENST00000542513.1_1_12:11047683-11047866:-|nuORF	ENST00000542513.1_1_12:11047683-11047866:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.2546997070312	2	592.25436	1182.49417	-0.25885	-0.0001533	1.1109	0.00065793	0.85205	0.00050463	592.2549289290687	53.079	0.81172	52.821	52.523	53.335	-0.25839					49	20	3	0	0	0	0.62431	1	5532	5532		74.255	8.7897	1	1738700			13505	16458	9484	9502	14845	14845					-0.08978117672427288
EPHQADEATW	10	Unmodified	_EPHQADEATW_					0	0	0		ENST00000542513.1_1_12:11047683-11047866:-|nuORF	ENST00000542513.1_1_12:11047683-11047866:-|nuORF	ENST00000542513.1_1_12:11047683-11047866:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.2548217773438	2	592.25436	1182.49417	-0.55243	-0.00032718	1.2104	0.00071687	0.65798	0.00038969	592.2549547796326	52.877	0.66665	52.688	52.43	53.096	-0.18982					40	16	3	0	0	0	0.60198	1	5503	5503		76.774	7.1465	1	1741000			13506	16458	9484	9502	14846	14846					-0.08978117672427288
EPHSGRREL	9	Unmodified	_EPHSGRREL_					0	0	0			REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.322265625	2	540.780879	1079.5472	-0.99258	-0.00053677	-1.1993	-0.00064855	-2.1919	-0.0011853	540.7807037270028	60.361	0.1561	60.147	60.04	60.196	-0.21339					6	3	2	0	0	0	0.024447	1	6910	6910		40.778	7.9657	1	33581	+		13507	35794	9485	9503	14847	14847					0.010613049009180031
EPHSSTKLD	9	Unmodified	_EPHSSTKLD_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2921447753906	2	507.248546	1012.48254	-0.29486	-0.00014957	3.5665	0.0018091	3.2716	0.0016595	507.2505697331962	21.434	0.62474	21.506	21.205	21.83	0.071487					18	12	2	0	0	0	0.024021	1	618	618		40.778	0	1	15807	+		13508	24464	9486	9504	14848	14848					-0.023203146957712306
EPHSYFPQW	9	Unmodified	_EPHSYFPQW_					0	0	0		nc|ENSG00000153303|Q8N878-2|FRMD1;ENSG00000153303|ENST00000283309|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.8065795898438	2	595.766906	1189.51926	-0.81468	-0.00048536	-0.13062	-7.782E-05	-0.9453	-0.00056318	595.7671753947083	65.891	0.32521	65.64	65.52	65.845	-0.25112					9	7	2	0	0	0	0.024021	1	7537	7537		58.782	4.0056	1	77032			13509	6341	9487	9505	14849	14849					-0.06792018079204354
EPHVIVLRA	9	Unmodified	_EPHVIVLRA_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7998046875	2	517.311284	1032.60801	0.48431	0.00025054	1.4415	0.00074572	1.9259	0.00099626	517.8132445845147	104.78	0.10863	104.61	104.55	104.66	-0.16484					4	2	2	0	0	0	0.024436	1	13034	13034		47.916	27.434	1	22802	+		13510	27265	9488	9506	14850	14850					0.09301441951129163
EPHVLTTVE	9	Unmodified	_EPHVLTTVE_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2853393554688	2	512.769114	1023.52368	-0.91384	-0.00046859	0.54799	0.00028099	-0.36585	-0.0001876	513.2713839182298	61.934	0.54604	61.756	61.495	62.042	-0.17781					19	13	2	0	0	0	0.024506	1	6960	6960		16.473	0	1	171500	+		13511	28456	9489	9507	14851	14851					0.012854463436951846
EPHYIEIW	8	Unmodified	_EPHYIEIW_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.8218994140625	2	543.766374	1085.5182	-0.4451	-0.00024203	2.1168	0.001151	1.6717	0.000909	543.7675153002142	68.387	0.69313	68.125	67.814	68.507	-0.26165					23	16	2	0	0	0	0.027866	1	7858	7858		19.36	0	1	96582			13512	9655	9490	9508	14852	14852					-0.021142324481161268
EPIEEMAPL	9	Unmodified	_EPIEEMAPL_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7691040039062	2	514.752075	1027.4896	0.0053997	2.7795E-06	2.8395	0.0014617	2.8449	0.0014644	514.753549460255	33.356	0.58444	33.413	33.07	33.654	0.056568					21	15	2	0	0	0	0.024466	1	2306	2306		42.474	0	1	116560	+		13513	28106	9491	9509	14853	14853					-0.02304718139544093
EPIEVIRPD	9	Unmodified	_EPIEVIRPD_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7567749023438	2	534.290214	1066.56587	0.11663	6.2314E-05	0.11608	6.202E-05	0.23271	0.00012433	534.290199158884	59.399	0.67712	59.217	58.872	59.549	-0.18133					31	16	3	0	0	0	0.024523	1	6523	6523		21.96	0	1	330650			13514	7253	9492	9510	14854	14854					0.035254217521242026
EPIFKQLY	8	Unmodified	_EPIFKQLY_					0	0	0			REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2616577148438	2	519.286943	1036.55933	-0.51527	-0.00026757	-4.3569	-0.0022625	-4.8722	-0.0025301	519.2845151585809	56.22	0.84419	56.005	55.709	56.553	-0.21551					33	21	2	0	0	0	0.027866	1	6071	6071		38.806	5.9937	1	282070	+		13515	20796	9493	9511	14855	14855					0.04251528591407805
EPIGRRRALL	10	Unmodified	_EPIGRRRALL_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.8663330078125	2	590.867289	1179.72002	-0.15177	-8.9679E-05	-1.0045	-0.00059355	-1.1563	-0.00068323	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931					85	41	5	0	0	0	1.089	1	12742	12742		34.173	3.6689	1	5173900	+		13516	28792	9494	9512	14856	14856					0.13735296028130506
EPIKKHAF	8	Unmodified	_EPIKKHAF_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2599792480469	2	485.279452	968.544351	-0.76688	-0.00037215	-3.1243	-0.0015161	-3.8912	-0.0018883	485.2779102937441	36.397	0.81631	36.355	36.032	36.849	-0.042458					55	21	4	0	0	0	0.027866	1	2861	2861		25.45	0	1	2867200	+		13517	24202	9495	9513	14857	14857					0.05882081514039328
EPIKSRAPQ	9	Unmodified	_EPIKSRAPQ_					0	0	0		nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1	nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	513.290548	1024.56654	-0.14387	-7.3848E-05	2.6253	0.0013475	2.4814	0.0012737	513.7932948828036	67.585	0.69914	67.609	67.31	68.009	0.023911					39	17	4	0	0	0	0.024447	1	7967	7967		19.104	0	1	1255900			13518	4699	9496	9514	14858	14858					0.055242611917947215
EPIPVLGGKD	10	Unmodified	_EPIPVLGGKD_					0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7879028320312	2	512.787307	1023.56006	-0.52682	-0.00027015	-0.15812	-8.1081E-05	-0.68494	-0.00035123	512.7869887194586	66.228	0.65099	66.259	65.812	66.463	0.030106					32	19	2	0	0	0	1.1131	1	7803	7803		17.468	2.8039	1	2029700			13519	9966	9497	9515	14859	14859					0.0492232324043016
EPIQDLLSTI	10	Unmodified	_EPIQDLLSTI_					0	0	0			REV__ENSG00000176986|ENST00000345254|SEC24C	REV__ENSG00000176986|ENST00000345254|SEC24C	MSMS	OPSCC_39_ClassI_Rep-3	3	564.8092651367188	2	564.810979	1127.6074	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.23	1	107.23	106.73	107.73	0.0018311								0	0	0	0.74335	1	13686	13686		39.253	3.6345	1		+		13520	27072	9498	9516	14860	14860					0.04870557720778379
EPIQQTRK	8	Unmodified	_EPIQQTRK_					0	0	0			REV__nc|ENSG00000169955|Q9BV97-1|ZNF747	REV__nc|ENSG00000169955|Q9BV97-1|ZNF747	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7731018066406	2	500.282723	998.550893	-0.501	-0.00025064	-1.1626	-0.00058161	-1.6636	-0.00083225	500.28251008236083	24.885	0.48221	24.885	24.653	25.135	0					18	10	2	0	0	0	0.027866	1	1100	1100		29.15	4.6304	1	273920	+		13521	36917	9499	9517	14861	14861					0.051559746747557256
EPIRPVNIP	9	Unmodified	_EPIRPVNIP_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8277587890625	2	517.803291	1033.59203	-0.2003	-0.00010372	0.090019	4.6612E-05	-0.11028	-5.7105E-05	517.8032903086831	34.76	0.52634	34.544	34.267	34.793	-0.21556					17	12	2	0	0	0	0.024405	1	2617	2617		53.351	17.733	1	385000			13522	10013	9500	9518	14862	14862					0.07657735714224145
EPIRPVNIP	9	Unmodified	_EPIRPVNIP_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.803291	1033.59203	-0.38971	-0.00020179	0.75594	0.00039143	0.36623	0.00018964	517.8034680006025	34.699	0.43919	34.513	34.282	34.721	-0.18675	0.12324	0.00083577	NaN	35.618	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307210			13523	10013	9500	9518							0.07657735714224145
EPITDCAVKQL	11	Unmodified	_EPITDCAVKQL_					0	0	0		UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant;nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.8165283203125	2	608.815738	1215.61692	-0.59537	-0.00036247	2.3029	0.0014021	1.7076	0.0010396	608.8171045659574	99.725	1.2635	99.725	99.268	100.53	0					87	30	5	0	0	0	0.70094	1	12741	12741		63.534	1.4264	1	4514300			13524	6543	9501	9519	14863	14863					0.01774002734646274
EPITDCAVKQL	11	Unmodified	_EPITDCAVKQL_					0	0	0		UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant;nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.81640625	2	608.815738	1215.61692	-0.73996	-0.0004505	2.7668	0.0016845	2.0269	0.001234	608.8173104468444	99.781	1.2722	99.776	99.343	100.62	-0.0050888					86	32	5	0	0	0	0.93575	1	12660	12660		56.434	6.9922	1	4634500			13525	6543	9501	9519	14864	14864					0.01774002734646274
EPITGVLPSP	10	Unmodified	_EPITGVLPSP_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3237609863281	2	505.281857	1008.54916	-0.056803	-2.8701E-05	1.2872	0.00065039	1.2304	0.00062168	505.78377874645514	79.089	0.28893	78.938	78.737	79.026	-0.15051					11	6	3	0	0	0	0.03519	1	9426	9426		47.657	0	1	81602	+		13526	20711	9502	9520	14865	14865					0.0452292086615671
EPIVEGEG	8	Unmodified	_EPIVEGEG_					0	0	0			REV__ENST00000462442.1_3_3:121553222-121553813:-|nuORF	REV__ENST00000462442.1_3_3:121553222-121553813:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.23016357421875	2	415.200533	828.386513	-0.87552	-0.00036352	3.2799	0.0013618	2.4044	0.00099832	415.2018287244638	26.918	0.37185	26.999	26.799	27.171	0.081293					14	9	2	0	0	0	0.027866	1	1350	1350		42.474	0	1	65259	+		13527	32903	9503	9521	14866	14866					-0.03454462535830771
EPIVFGFERMY	11	Unmodified	_EPIVFGFERMY_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7687072753906	3	463.228679	1386.66421	-0.50511	-0.00023398	0.23769	0.0001101	-0.26743	-0.00012388	463.22874246253525	24.076	0.51936	24.076	23.822	24.341	0					19	11	2	0	0	0	0.024792	1	980	980		18.531	3.1979	1	115750	+		13528	27209	9504	9522	14867	14867					-0.013657179943493247
EPIYGCTKVQ	10	Unmodified	_EPIYGCTKVQ_					0	0	0			REV__ENSG00000134389|ENST00000256785|CFHR5	REV__ENSG00000134389|ENST00000256785|CFHR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.8001098632812	2	569.284074	1136.5536	-1.8096	-0.0010302	1.1817	0.00067274	-0.62792	-0.00035747	569.2846927524358	49.502	0.44979	49.577	49.391	49.84	0.074196					22	11	3	0	0	0	0.03519	1	5040	5040		30.318	4.7437	1	224470	+		13529	23448	9505	9523	14868	14868					-0.009219379825935903
EPIYKQQTQ	9	Unmodified	_EPIYKQQTQ_					0	0	0		ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-8|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.821533203125	2	567.793121	1133.57169	-0.48404	-0.00027483	-0.13801	-7.836E-05	-0.62205	-0.00035319	567.7928379653833	67.839	0.65213	67.858	67.466	68.118	0.018913					31	16	3	0	0	0	0.024541	1	8059	8059		5.9211	0	1	265120			13530	2893	9506	9524	14869	14869					0.010245202637634065
EPKASRKR	8	Unmodified	_EPKASRKR_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2919921875	2	486.290882	970.567212	-1.0516	-0.0005114	3.1325	0.0015233	2.0809	0.0010119	486.29234932981416	59.764	1.794	59.85	59.206	61	0.085682					123	47	5	0	0	0	0.83003	1	6789	6789		56.721	3.7844	1	19443000	+		13531	23210	9507	9525	14870	14870					0.08075100631515397
EPKEPSPKQDV	11	Unmodified	_EPKEPSPKQDV_					0	0	0		nc|ENSG00000101040|Q9ULU4-2|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	627.3260498046875	2	627.322242	1252.62993	0.34043	0.00021356	2.9558	0.0018542	3.2962	0.0020678	627.3240830393496	101.45	0.94011	101.45	101.13	102.07	0.0090332					65	21	5	0	0	0	0.47044	1	12949	12949		78.264	0.9462	1	1517500			13532	2278	9508	9526	14871	14871					0.013721571183623382
EPKEPSPKQDV	11	Unmodified	_EPKEPSPKQDV_					0	0	0		nc|ENSG00000101040|Q9ULU4-2|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	627.322242	1252.62993	-0.12465	-7.8195E-05	3.2741	0.0020539	3.1494	0.0019757	627.3242921246267	101.48	0.83704	101.48	101.2	102.04	0	0.071405	-5.1913E-05	NaN	78.264	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1540700			13533	2278	9508	9526							0.013721571183623382
EPKEPSPKQDV	11	Unmodified	_EPKEPSPKQDV_					0	0	0		nc|ENSG00000101040|Q9ULU4-2|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	627.322242	1252.62993	-0.1307	-8.1994E-05	3.6875	0.0023133	3.5568	0.0022313	627.324524037461	101.55	1.0087	101.54	101.23	102.24	-0.0054474	0.13207	0.00046684	NaN	78.264	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1395900			13534	2278	9508	9526							0.013721571183623382
EPKEPSPKQDV	11	Unmodified	_EPKEPSPKQDV_					0	0	0		nc|ENSG00000101040|Q9ULU4-2|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	627.322242	1252.62993	0.31871	0.00019994	2.8448	0.0017846	3.1635	0.0019845	627.3240088546831	101.47	0.58595	101.34	101.09	101.67	-0.13156	-0.074701	-0.00059053	NaN	78.264	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487030			13535	2278	9508	9526							0.013721571183623382
EPKEPSPKQDV	11	Unmodified	_EPKEPSPKQDV_					0	0	0		nc|ENSG00000101040|Q9ULU4-2|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	627.322242	1252.62993	-0.4313	-0.00027057	3.611	0.0022652	3.1796	0.0019947	627.3244724500552	101.44	0.65463	101.32	101.07	101.72	-0.12576	-0.095121	0.00037076	NaN	78.264	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451200			13536	2278	9508	9526							0.013721571183623382
EPKEPSPKQDV	11	Unmodified	_EPKEPSPKQDV_					0	0	0		nc|ENSG00000101040|Q9ULU4-2|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	627.322242	1252.62993	0.076028	4.7694E-05	3.1854	0.0019983	3.2615	0.002046	627.3242083427197	101.51	0.58916	101.34	101.15	101.74	-0.17179	-0.075015	-0.00016311	NaN	78.264	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476870			13537	2278	9508	9526							0.013721571183623382
EPKFTSTK	8	Unmodified	_EPKFTSTK_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.7644958496094	2	469.2531	936.491647	0.015014	7.0453E-06	-0.076259	-3.5785E-05	-0.061245	-2.874E-05	469.25295590794855	71.696	0.63614	71.49	71.225	71.861	-0.20614					24	15	2	0	0	0	0.027866	1	8418	8418		21.96	0	1	259540	+		13538	20974	9509	9527	14872	14872					0.020860786605680914
EPKHLTLYI	9	Unmodified	_EPKHLTLYI_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.3162841796875	2	557.318774	1112.623	0.41025	0.00022864	-1.0594	-0.00059044	-0.64918	-0.0003618	557.3181335867368	69.96	0.68952	69.667	69.348	70.038	-0.29291					68	16	5	0	0	0	0.26966	1	8384	8384		79.713	10.085	1	8500500	+		13539	22090	9510	9528	14873	14873					0.07118889028447484
EPKKPPTVP	9	Unmodified	_EPKKPPTVP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2740478515625	2	496.792392	991.570232	-0.63571	-0.00031582	0.58731	0.00029177	-0.048405	-2.4047E-05	496.79224574658383	40.034	0.56627	39.921	39.677	40.243	-0.11222					31	14	4	0	0	0	0.024405	1	3490	3490		35.618	3.6634	1	903010	+		13540	25017	9511	9529	14874	14874					0.0741093096565919
EPKKSLTQT	9	Unmodified	_EPKKSLTQT_					0	0	0			REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	REV__HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3090209960938	2	516.290214	1030.56587	-0.57563	-0.00029719	-1.2919	-0.00066701	-1.8675	-0.0009642	516.2900324274746	60.59	0.60369	60.337	60.132	60.736	-0.25373					32	14	3	0	0	0	0.024477	1	6739	6739		14.865	0	1	253630	+		13541	27495	9512	9530	14875	14875					0.051814217520814054
EPKKVADL	8	Unmodified	_EPKKVADL_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7792663574219	2	450.263468	898.512382	-0.23455	-0.00010561	0.79912	0.00035982	0.56458	0.00025421	450.2635851774114	31.037	0.78814	30.884	30.553	31.342	-0.15231					47	19	3	0	0	0	0.027866	1	1962	1962		58.782	0	1	550000			13542	6969	9513	9531	14876	14876					0.05906669040234647
EPKKVRKP	8	Unmodified	_EPKKVRKP_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L;nc|ENSG00000071537|Q9UBV2-2|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.3109436035156	2	491.313826	980.613099	-0.66241	-0.00032545	-2.0799	-0.0010219	-2.7423	-0.0013474	491.3130021172553	62.018	0.23481	61.805	61.737	61.972	-0.21375					7	5	2	0	0	0	0.027866	1	6961	6961		47.916	14.4	1	45517			13543	1453	9514	9532	14877	14877					0.12201745813752041
EPKLAKNCT	9	Unmodified	_EPKLAKNCT_					0	0	0			REV__ENSG00000134917|ENST00000257359|ADAMTS8	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.28997802734375	2	502.265684	1002.51682	-0.60863	-0.0003057	2.2116	0.0011108	1.6029	0.0008051	502.7703314798767	83.235	0.89505	83.262	82.531	83.427	0.02655					25	20	2	0	0	0	0.024466	1	10325	10325		12.812	0	1	73795	+		13544	23497	9515	9533	14878	14878					0.015658101914937106
EPKLDRYIL	9	Unmodified	_EPKLDRYIL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.8306884765625	2	573.829506	1145.64446	-1.1712	-0.00067206	3.9019	0.002239	2.7307	0.001567	573.8316289581558	54.808	1.2866	54.808	54.428	55.715	0					92	36	4	0	0	0	0.16468	4	5999	5999;6013;6026;6041		96.19	0	1	6708400	+		13545	34688	9516	9534	14879;14880;14881;14882	14879					0.07746274057171831
EPKLDRYIL	9	Unmodified	_EPKLDRYIL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.8314208984375	2	573.829506	1145.64446	-0.092995	-5.3363E-05	2.8649	0.001644	2.7719	0.0015906	573.8310312489772	54.911	1.4449	54.76	54.339	55.784	-0.15036					95	40	4	0	0	0	0.18915	4	6008	5986;5998;6008;6020		90.777	0	1	7081400	+		13546	34688	9516	9534	14883;14884;14885;14886	14885					0.07746274057171831
EPKLDRYIL	9	Unmodified	_EPKLDRYIL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.83056640625	2	573.829506	1145.64446	-0.29829	-0.00017117	2.9842	0.0017124	2.6859	0.0015413	573.8311212997662	54.575	1.3797	54.673	54.328	55.707	0.098015					92	38	4	0	0	0	0.18915	4	5894	5894;5905;5915;5926		90.777	0	1	6813000	+		13547	34688	9516	9534	14887;14888;14889;14890	14887					0.07746274057171831
EPKLDRYIL	9	Unmodified	_EPKLDRYIL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	573.829506	1145.64446	-1.1712	-0.00067206	3.9019	0.002239	2.7307	0.001567	573.8316289581558	54.808	1.2866	54.808	54.428	55.715	0	0.060571	0.00062537	NaN	96.19	92	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6708400	+		13548	34688	9516	9534							0.07746274057171831
EPKLDRYIL	9	Unmodified	_EPKLDRYIL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	573.829506	1145.64446	-0.092995	-5.3363E-05	2.8649	0.001644	2.7719	0.0015906	573.8310312489772	54.911	1.4449	54.76	54.339	55.784	-0.15036	0.013303	-0.0005647	NaN	96.19	95	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7081400	+		13549	34688	9516	9534							0.07746274057171831
EPKLDRYIL	9	Unmodified	_EPKLDRYIL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	573.829506	1145.64446	-0.29829	-0.00017117	2.9842	0.0017124	2.6859	0.0015413	573.8311212997662	54.575	1.3797	54.673	54.328	55.707	0.098015	-0.073873	-0.00042782	NaN	96.19	92	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6813000	+		13550	34688	9516	9534							0.07746274057171831
EPKLISDPEA	10	Unmodified	_EPKLISDPEA_					0	0	0			REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	REV__nc|ENSG00000167671|Q9BZV1-2|UBXN6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.7405395507812	2	549.787504	1097.56045	-0.52461	-0.00028842	1.4047	0.00077226	0.88005	0.00048384	549.788128696857	42.607	0.72781	42.381	42.105	42.833	-0.22597					44	18	3	0	0	0	0.03519	1	3876	3876		52.937	20.982	1	1001100	+		13551	26175	9517	9535	14891	14891					0.015576981696312941
EPKLKVDLT	9	Unmodified	_EPKLKVDLT_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7659301757812	2	521.810782	1041.60701	0.45265	0.0002362	-0.29615	-0.00015453	0.1565	8.1663E-05	521.8104403328429	78.62	0.64455	78.389	78.176	78.82	-0.23141					19	14	2	0	0	0	0.024523	1	9423	9423		21.96	0	1	124280			13552	5597	9518	9536	14892	14892					0.0878718279154782
EPKLLEKAP	9	Unmodified	_EPKLLEKAP_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7677001953125	2	512.8055	1023.59645	-0.46671	-0.00023933	0.027282	1.3991E-05	-0.43943	-0.00022534	512.8054156758676	79.003	0.66571	79.003	78.658	79.323	0					23	15	2	0	0	0	0.023274	1	9836	9836		58.23	17.452	1	340240	+		13553	27449	9519	9537	14893	14893					0.08559200137131029
EPKLLEKAP	9	Unmodified	_EPKLLEKAP_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7671508789062	2	512.8055	1023.59645	-0.51421	-0.00026369	0.15477	7.9367E-05	-0.35944	-0.00018432	512.8054622069642	79.179	0.66324	79.007	78.653	79.316	-0.17226					25	15	2	0	0	0	0.024261	1	9827	9827		45.972	14.442	1	371410	+		13554	27449	9519	9537	14894	14894					0.08559200137131029
EPKLLEKAP	9	Unmodified	_EPKLLEKAP_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.8055	1023.59645	-0.33922	-0.00017396	0.11907	6.1062E-05	-0.22015	-0.00011289	512.8054492175347	79.028	0.45602	79.046	78.777	79.233	0.018677	0.027599	2.1327E-05	NaN	58.23	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385700	+		13555	27449	9519	9537							0.08559200137131029
EPKNPIKQPY	10	Unmodified	_EPKNPIKQPY_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	607.7569580078125	2	607.332413	1212.65027	-1.2428	-0.00075476	-4.1799	-0.0025386	-5.4226	-0.0032933	607.329549728156	52.282	1.7547	52.163	51.319	53.074	-0.11875					83	45	3	0	0	0	0.03519	1	5365	5365		76.774	21.998	1	398960	+		13556	25604	9520	9538	14895	14895					0.0524537256885651
EPKPEVPM	8	Unmodified	_EPKPEVPM_					0	0	0			REV__ENSG00000266412|ENST00000581486|NCOA4	REV__ENSG00000266412|ENST00000581486|NCOA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.73797607421875	2	463.736228	925.457904	0.25416	0.00011787	3.9162	0.0018161	4.1704	0.001934	463.7379153888909	31.756	1.2851	31.825	31.527	32.812	0.068962					50	32	2	0	0	0	0.81662	1	2102	2102		57.811	13.28	1	1858500	+		13557	29141	9521	9539	14896	14896					-0.007806661028325834
EPKPEVPM	8	Unmodified	_EPKPEVPM_					0	0	0			REV__ENSG00000266412|ENST00000581486|NCOA4	REV__ENSG00000266412|ENST00000581486|NCOA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.736228	925.457904	-0.58582	-0.00027167	5.1006	0.0023653	4.5148	0.0020937	463.73841928681435	31.638	0.48313	31.638	31.386	31.869	0	-0.041858	0.00075086	NaN	57.811	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344070	+		13558	29141	9521	9539							-0.007806661028325834
EPKPEVPM	8	Unmodified	_EPKPEVPM_					0	0	0			REV__ENSG00000266412|ENST00000581486|NCOA4	REV__ENSG00000266412|ENST00000581486|NCOA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.736228	925.457904	-0.2105	-9.7618E-05	4.7387	0.0021975	4.5282	0.0020999	463.73822897582977	31.565	0.44288	31.577	31.299	31.742	0.011797	-0.10341	0.00041524	NaN	57.811	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191670	+		13559	29141	9521	9539							-0.007806661028325834
EPKPNPYL	8	Unmodified	_EPKPNPYL_					0	0	0			REV__ENST00000490881.5_1_1:163291794-163297702:+|nuORF	REV__ENST00000490881.5_1_1:163291794-163297702:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.77154541015625	2	479.255643	956.496732	0.40009	0.00019175	-0.2536	-0.00012154	0.14649	7.0205E-05	479.2552684093162	75.123	0.94701	75.123	74.466	75.413	0					36	23	2	0	0	0	0.027866	1	9154	9154		49.442	0	1	204390	+		13560	24215	9522	9540	14897	14897					0.01674382523174245
EPKRHPSTL	9	Unmodified	_EPKRHPSTL_					0	0	0		ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.796142578125	2	532.795998	1063.57744	-1.4075	-0.00074992	0.95375	0.00050816	-0.45376	-0.00024176	532.7964432291853	35.708	1.0261	35.708	35.38	36.406	0					68	27	4	0	0	0	0.85329	1	2763	2763		35.618	0	1	3283300			13561	3193	9523	9541	14898	14898					0.048196635660815446
EPKRKLPV	8	Unmodified	_EPKRKLPV_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MSMS	OPSCC_40_ClassI_Rep-2	5	483.8083801269531	2	483.808377	965.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.414	1	21.224	20.724	21.724	-0.19072								0	0	0	0.60555	1	658	658		47.916	0	1				13562	2846	9524	9542	14899	14899					0.11802343439455854
EPKRKLPV	8	Unmodified	_EPKRKLPV_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.8082580566406	2	483.808377	965.6022	-1.1767	-0.00056928	1.0237	0.00049528	-0.15296	-7.4005E-05	483.8086951202378	21.401	0.5862	21.188	20.872	21.458	-0.2128					29	11	4	0	0	0	0.93274	1	641	641		47.916	0	1	445000			13563	2846	9524	9542	14900	14900					0.11802343439455854
EPKRKLPV	8	Unmodified	_EPKRKLPV_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	483.808377	965.6022	0.43798	0.0002119	-0.46777	-0.00022631	-0.029789	-1.4412E-05	483.8079363164059	21.217	0.76861	21.04	20.581	21.35	-0.17721	-0.073804	-0.00072804	NaN	47.916	34	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501570			13564	2846	9524	9542							0.11802343439455854
EPKRNVVVT	9	Unmodified	_EPKRNVVVT_					0	0	0		ENSG00000086102|ENST00000379540|NFX1;C12orf10-NFX1|1|fusion	ENSG00000086102|ENST00000379540|NFX1;C12orf10-NFX1|1|fusion	ENSG00000086102|ENST00000379540|NFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.766357421875	2	521.306198	1040.59784	0.41005	0.00021376	-2.2565	-0.0011763	-1.8464	-0.00096255	521.3051696543471	47.418	0.72822	47.148	46.908	47.636	-0.26939					35	19	2	0	0	0	0.024292	1	4701	4701		49.442	10.635	1	475650			13565	1810;195	9525	9543	14901	14901					0.07916834225898128
EPKSIFQCSS	10	Unmodified	_EPKSIFQCSS_					0	0	0		ENST00000253513.11_1_8:39780074-39782780:+|nuORF	ENST00000253513.11_1_8:39780074-39782780:+|nuORF	ENST00000253513.11_1_8:39780074-39782780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2677612304688	2	563.265881	1124.51721	1.6447	0.00092638	1.7115	0.00096404	3.3562	0.0018904	563.2665769908557	23.493	1.8958	23.302	23.034	24.93	-0.19117					109	43	5	0	0	0	0.64538	1	898	898		71.877	10.186	1	7792100			13566	11370	9526	9544	14902	14902					-0.04006814879312515
EPKSKLET	8	Unmodified	_EPKSKLET_					0	0	0			REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.27197265625	2	466.258382	930.502212	0.12047	5.6168E-05	0.13787	6.4285E-05	0.25834	0.00012045	466.25833088244303	36.08	0.59139	35.863	35.614	36.205	-0.21661					38	16	3	0	0	0	0.027866	1	2845	2845		15.642	0	1	1625000	+		13567	27063	9527	9545	14903	14903					0.03418061315016985
EPKTKDDLEQ	10	Unmodified	_EPKTKDDLEQ_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3;nc|ENSG00000166900|Q13277-3|STX3;ENSG00000166900|ENST00000337979|STX3	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	602.7719116210938	2	601.7986	1201.58265	-0.66212	-0.00039846	-1.6967	-0.0010211	-2.3588	-0.0014195	601.7975476111422	64.614	0.38921	64.359	64.115	64.504	-0.25563					11	9	2	0	0	0	0.03519	1	7308	7308		23.523	11.316	1	70817			13568	7625	9528	9546	14904	14904					-0.010081221525979345
EPKTKDDLEQ	10	Unmodified	_EPKTKDDLEQ_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3;nc|ENSG00000166900|Q13277-3|STX3;ENSG00000166900|ENST00000337979|STX3	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	601.7986	1201.58265	-1.0577	-0.00063652	-6.6296	-0.0039897	-7.6873	-0.0046262	602.2957304606609	64.775	0.15683	64.572	64.5	64.657	-0.20254	0.10656	-0.0047136	NaN	12.207	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59904			13569	7625	9528	9546							-0.010081221525979345
EPKTSVAPL	9	Unmodified	_EPKTSVAPL_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.26910400390625	2	471.26875	940.522947	0.99618	0.00046947	-0.69563	-0.00032783	0.30055	0.00014164	471.26825266472514	78.428	0.94969	78.236	77.891	78.841	-0.1921					43	22	3	0	0	0	0.59099	1	9685	9685		53.351	2.016	1	2285200			13570	3097	9529	9547	14905	14905					0.05030651694653443
EPKVALLAV	9	Unmodified	_EPKVALLAV_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.768798828125	2	470.29731	938.580068	-0.81033	-0.00038109	0.41258	0.00019404	-0.39774	-0.00018706	470.2973094496545	65.108	0.64437	64.852	64.621	65.266	-0.25562					30	15	3	0	0	0	0.024477	1	7409	7409		44.117	19.914	1	605770			13571	3681	9530	9548	14906	14906					0.10832118971029558
EPKVCVHGGL	10	Unmodified	_EPKVCVHGGL_					0	0	0		ENST00000396037.8_1_12:22487205-22487331:-|nuORF	ENST00000396037.8_1_12:22487205-22487331:-|nuORF	ENST00000396037.8_1_12:22487205-22487331:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.8002319335938	2	519.773677	1037.5328	-0.26476	-0.00013762	0.24648	0.00012811	-0.018286	-9.5046E-06	519.7738182531789	52.045	0.65486	51.898	51.711	52.366	-0.14735					32	17	2	0	0	0	0.03519	1	5554	5554		6.3127	0	1	241510			13572	13541	9531	9549	14907	14907					0.015535164284074199
EPKVSQLQP	9	Unmodified	_EPKVSQLQP_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8189086914062	2	513.284931	1024.55531	-0.32442	-0.00016652	3.0132	0.0015466	2.6888	0.0013801	513.2867243716033	68.515	0.69176	68.254	67.855	68.547	-0.26166					20	16	2	0	0	0	0.024495	1	7938	7938		19.997	0	1	194460	+		13573	28831	9532	9550	14908	14908					0.04401439097682669
EPLAEDIL	8	Unmodified	_EPLAEDIL_					0	0	0		nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;ENST00000490851.5_1_7:18832955-19035682:+|nuORF	nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2240295410156	2	450.239658	898.464763	-0.0095269	-4.2894E-06	-3.6347	-0.0016365	-3.6442	-0.0016408	450.2381578203871	23.857	0.44562	23.933	23.69	24.136	0.076241					12	9	2	0	0	0	0.027866	1	937	937		40.573	0	1	19224			13574	18046	9533	9551	14909	14909					0.01146970049387619
EPLCTSVVTC	10	Unmodified	_EPLCTSVVTC_					0	0	0		FOS|p.P326S|1|0.14|ENSG00000170345|chr14:75281257-75281257|C/T|missense_variant	FOS|p.P326S|1|0.14|ENSG00000170345|chr14:75281257-75281257|C/T|missense_variant	FOS|p.P326S|1|0.14|ENSG00000170345|chr14:75281257-75281257|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.8056030273438	2	526.24356	1050.47257	-0.28613	-0.00015057	-2.5072	-0.0013194	-2.7933	-0.00147	526.2431875593177	42.807	0.31544	42.694	42.576	42.891	-0.11253					10	7	2	0	0	0	0.03519	1	3900	3900		26.693	0	1	105060			13575	17656	9534	9552	14910	14910					-0.050649620169906484
EPLCVMKER	9	Unmodified	_EPLCVMKER_					0	0	0			REV__nc|ENSG00000144837|Q53H76-4|PLA1A	REV__nc|ENSG00000144837|Q53H76-4|PLA1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8110961914062	2	552.780644	1103.54674	-0.2106	-0.00011641	-2.164	-0.0011962	-2.3746	-0.0013126	552.7790649963439	52.178	1.9419	52.178	51.395	53.337	0					97	52	4	0	0	0	0.024427	1	5468	5468		34.173	8.5985	1	509380	+		13576	24367	9535	9553	14911	14911					-0.000895741348131196
EPLDPLDLVVL	11	Unmodified	_EPLDPLDLVVL_					0	0	0			REV__ENSG00000149428|ENST00000617285|HYOU1	REV__ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.5391540527344	3	408.235828	1221.68566	-0.15406	-6.2894E-05	4.0849	0.0016676	3.9308	0.0016047	408.23737996082417	30.221	0.93468	30.072	29.792	30.727	-0.14952					39	21	3	0	0	0	0.024743	1	1957	1957		29.551	0	1	161660	+		13577	24675	9536	9554	14912	14912					0.08367990306010142
EPLEEEEEE	9	Unmodified	_EPLEEEEEE_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.767578125	2	566.730049	1131.44554	-1.0457	-0.00059262	0.79384	0.00044989	-0.25183	-0.00014272	566.7308352698542	40.928	0.31413	40.951	40.797	41.111	0.023006					17	8	3	0	0	0	0.024381	1	3605	3605		29.15	0	1	295740	+		13578	37226	9537	9555	14913	14913					-0.11492075822843617
EPLEIDDIN	9	Unmodified	_EPLEIDDIN_					0	0	0		nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8058471679688	2	529.256037	1056.49752	-0.20406	-0.000108	-1.9453	-0.0010296	-2.1493	-0.0011376	529.2548487560694	52.652	2.2145	52.744	51.967	54.182	0.091942					102	59	2	0	0	0	0.024319	1	5800	5800		39.253	8.7492	1	361220			13579	1694	9538	9556	14914	14914					-0.02846867618404758
EPLELVQPP	9	Unmodified	_EPLELVQPP_					0	0	0			REV__ENSG00000019485|ENST00000683152|PRDM11;REV__nc|ENSG00000019485|Q9NQV5|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2535400390625	2	511.281857	1020.54916	-0.1526	-7.8022E-05	-0.76294	-0.00039008	-0.91554	-0.0004681	511.27998933482195	54.03	0.2029	53.883	53.784	53.987	-0.14724					6	5	2	0	0	0	0.024447	1	5848	5848		49.442	3.4896	1	87754	+		13580	19987;36439	9539	9557	14915	14915					0.03970920866140659
EPLFLVLDL	9	Unmodified	_EPLFLVLDL_					0	0	0			REV__ENSG00000174842|ENST00000370360|GLMN	REV__ENSG00000174842|ENST00000370360|GLMN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8074340820312	2	529.810251	1057.60595	-0.42852	-0.00022703	-2.4846	-0.0013163	-2.9131	-0.0015434	529.808633202114	49.531	0.5912	49.379	49.043	49.634	-0.1512					45	15	4	0	0	0	0.62163	1	5105	5105		51.335	3.4199	1	1548300	+		13581	26899	9540	9558	14916	14916					0.07944968422657439
EPLGQLEPP	9	Unmodified	_EPLGQLEPP_					0	0	0			REV__nc|ENSG00000173848|Q7Z628-2|NET1	REV__nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2583923339844	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.89441	1	13356	13356		32.812	3.6629	1	7056700	+		13582	26815	9541	9559	14917	14917					0.012100613149982564
EPLHGFSI	8	Unmodified	_EPLHGFSI_					0	0	0			REV__ENST00000254940.9_1_16:69376017-69376176:+|nuORF	REV__ENST00000254940.9_1_16:69376017-69376176:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.74072265625	2	450.23471	898.454868	-0.91465	-0.00041181	-3.147	-0.0014169	-4.0617	-0.0018287	450.23322776304826	30.416	0.4557	30.416	30.137	30.592	0					16	10	2	0	0	0	0.027866	1	1970	1970		38.806	0	1	297770	+		13583	29535	9542	9560	14918	14918					0.0015782683468614778
EPLHRKAGSL	10	Unmodified	_EPLHRKAGSL_					0	0	0		ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.7846069335938	2	554.317097	1106.61964	-0.30487	-0.00016899	-1.2858	-0.00071276	-1.5907	-0.00088175	554.3164737871297	41.692	1.0368	41.56	40.716	41.753	-0.13219					41	28	2	0	0	0	0.03519	1	3652	3652		58.23	10.314	1	155660			13584	8330	9543	9561	14919	14919					0.07059638974487825
EPLIFFYH	8	Unmodified	_EPLIFFYH_					0	0	0			REV__ENST00000381774.8_1_16:12758610-12758712:-|nuORF	REV__ENST00000381774.8_1_16:12758610-12758712:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8236694335938	2	533.273835	1064.53312	-0.73791	-0.00039351	-2.3195	-0.0012369	-3.0574	-0.0016304	533.2711791083551	52.41	0.12003	52.41	52.311	52.431	0					4	2	2	0	0	0	0.027866	1	5609	5609		13.775	0	1	39021	+		13585	31524	9544	9562	14920	14920					0.0034325941990118736
EPLIPTTPI	9	Unmodified	_EPLIPTTPI_					0	0	0		ENST00000492961.1_1_7:35271114-35293240:-|nuORF;ENSG00000164532|ENST00000408931|TBX20	ENST00000492961.1_1_7:35271114-35293240:-|nuORF	ENST00000492961.1_1_7:35271114-35293240:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.74298095703125	2	490.786776	979.558998	-0.67572	-0.00033164	-2.0918	-0.0010266	-2.7675	-0.0013583	490.7857223888035	31.445	0.64944	31.204	30.875	31.524	-0.24109					23	16	2	0	0	0	0.024412	1	2131	2131		40.573	8.6178	1	137450			13586	7290	9545	9563	14921	14921					0.06840108871517714
EPLIQCLNDP	10	Unmodified	_EPLIQCLNDP_					0	0	0		ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.33154296875	2	571.281531	1140.54851	-0.32421	-0.00018521	0.15731	8.9867E-05	-0.1669	-9.5348E-05	571.2813480141723	64.264	0.62571	64.001	63.791	64.417	-0.2626					35	16	3	0	0	0	0.03519	1	7512	7512		41.427	18.384	1	446260			13587	7809	9546	9564	14922	14922					-0.01614241845209108
EPLITVELS	9	Unmodified	_EPLITVELS_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7644958496094	2	500.78169	999.548827	-0.35011	-0.00017533	-3.6577	-0.0018317	-4.0078	-0.002007	500.7800096175969	31.609	0.60877	31.621	31.214	31.823	0.011797					29	14	4	0	0	0	0.024323	1	2123	2123		44.117	6.9577	1	258140			13588	3886	9547	9565	14923	14923					0.04903501146293365
EPLKIGPFL	9	Unmodified	_EPLKIGPFL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7821960449219	2	507.305136	1012.59572	-0.57463	-0.00029151	3.6977	0.0018758	3.123	0.0015843	507.8066999447257	42.12	0.20186	41.889	41.769	41.971	-0.23186					8	5	2	0	0	0	0.024457	1	3743	3743		29.15	13.508	1	52614	+		13589	26900	9548	9566	14924	14924					0.08992405488095301
EPLKRPPRSSP	11	Unmodified	_EPLKRPPRSSP_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	632.8634033203125	2	632.362036	1262.70952	0.70351	0.00044488	-1.1277	-0.00071309	-0.42414	-0.00026821	632.3613020077688	105.94	0.52368	105.94	105.7	106.23	-0.0013123					29	18	2	0	0	0	0.95882	1	13570	13570		45.972	3.5761	1	631720	+		13590	35883	9549	9567	14925	14925					0.08867268583026089
EPLKRPPRSSP	11	Unmodified	_EPLKRPPRSSP_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	632.362036	1262.70952	0.83791	0.00052986	-1.3381	-0.00084614	-0.50016	-0.00031628	632.3609673510513	105.96	0.37948	105.96	105.76	106.14	0	-0.0092326	-0.0010788	NaN	45.972	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106320	+		13591	35883	9549	9567							0.08867268583026089
EPLKRPPRSSP	11	Unmodified	_EPLKRPPRSSP_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	632.362036	1262.70952	0.70351	0.00044488	-1.1277	-0.00071309	-0.42414	-0.00026821	632.3613020077688	105.94	0.52368	105.94	105.7	106.23	-0.0013123	-0.038425	-0.00081268	NaN	45.972	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631720	+		13592	35883	9549	9567							0.08867268583026089
EPLKRPPRSSP	11	Unmodified	_EPLKRPPRSSP_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	632.362036	1262.70952	-0.12695	-8.0279E-05	-0.71376	-0.00045135	-0.84071	-0.00053163	632.3615772005551	106.01	0.41851	106.01	105.81	106.23	0.00015259	0.040791	-0.00028921	NaN	45.972	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476190	+		13593	35883	9549	9567							0.08867268583026089
EPLKRPPRSSP	11	Unmodified	_EPLKRPPRSSP_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	632.362036	1262.70952	-0.62901	-0.00039776	-0.10013	-6.332E-05	-0.72914	-0.00046108	632.3622954734386	106.1	0.44446	105.97	105.62	106.06	-0.1238	0.00035435	0.00048686	NaN	45.972	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88921	+		13594	35883	9549	9567							0.08867268583026089
EPLKRPPRSSP	11	Unmodified	_EPLKRPPRSSP_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	632.362036	1262.70952	-1.4856	-0.00093941	0.64508	0.00040792	-0.84048	-0.00053149	632.8638143980394	106.1	0.51675	105.97	105.67	106.18	-0.1328	-0.0030339	0.0014293	NaN	45.972	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491350	+		13595	35883	9549	9567							0.08867268583026089
EPLKRPPRSSP	11	Unmodified	_EPLKRPPRSSP_					0	0	0			REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	REV__ENST00000602662.1_3_1:19984160-19984526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	632.362036	1262.70952	0.31299	0.00019792	-0.63925	-0.00040424	-0.32626	-0.00020631	632.8628391016664	106.15	0.3374	105.98	105.82	106.16	-0.16133	0.0095464	-0.00019498	NaN	45.972	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65262	+		13596	35883	9549	9567							0.08867268583026089
EPLKVLGITD	10	Unmodified	_EPLKVLGITD_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000473202.1_1_2:224847347-224847473:-|nuORF;ENST00000478966.1_1_2:224840586-224849719:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.24755859375	2	542.816064	1083.61758	-1.2014	-0.00065211	-0.54085	-0.00029358	-1.7422	-0.00094569	542.8164573860577	90.079	0.2877	89.924	89.695	89.983	-0.15542					8	6	2	0	0	0	0.03519	1	10977	10977		29.17	3.596	1	34546			13597	4951	9550	9568	14926	14926					0.07911165445989354
EPLKVLGITD	10	Unmodified	_EPLKVLGITD_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000473202.1_1_2:224847347-224847473:-|nuORF;ENST00000478966.1_1_2:224840586-224849719:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.816064	1083.61758	-0.50235	-0.00027268	1.4831	0.00080505	0.98075	0.00053237	542.8166833022336	90.074	0.48077	90.057	89.879	90.36	-0.016716	0.026234	2.0335E-05	NaN	29.17	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129340			13598	4951	9550	9568							0.07911165445989354
EPLKVLGITD	10	Unmodified	_EPLKVLGITD_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000473202.1_1_2:224847347-224847473:-|nuORF;ENST00000478966.1_1_2:224840586-224849719:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.816064	1083.61758	-0.51929	-0.00028188	1.0858	0.00058941	0.56655	0.00030753	542.8164165119713	90.192	0.40508	90.205	90.004	90.409	0.013443	0.17412	-0.00041094	NaN	29.17	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103680			13599	4951	9550	9568							0.07911165445989354
EPLKVLGITD	10	Unmodified	_EPLKVLGITD_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000473202.1_1_2:224847347-224847473:-|nuORF;ENST00000478966.1_1_2:224840586-224849719:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.816064	1083.61758	-0.7602	-0.00041265	2.7574	0.0014968	1.9972	0.0010841	543.3190075554447	90.082	0.29082	89.956	89.719	90.01	-0.12513	-0.074391	0.0014037	NaN	29.17	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57146			13600	4951	9550	9568							0.07911165445989354
EPLKVLGITD	10	Unmodified	_EPLKVLGITD_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000473202.1_1_2:224847347-224847473:-|nuORF;ENST00000478966.1_1_2:224840586-224849719:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.816064	1083.61758	-0.4797	-0.00026039	1.9577	0.0010627	1.478	0.00080228	542.8174260077747	90.15	0.24535	90.012	89.792	90.037	-0.13824	-0.019002	0.00053557	NaN	29.17	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89301			13601	4951	9550	9568							0.07911165445989354
EPLLCTLSFSL	11	Unmodified	_EPLLCTLSFSL_					0	0	0			REV__nc|ENSG00000182352|Q96MU5|CD300LD-AS1	REV__nc|ENSG00000182352|Q96MU5|CD300LD-AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.5391540527344	3	408.21778	1221.63151	-0.16404	-6.6963E-05	3.2879	0.0013422	3.1239	0.0012752	408.2192956533914	30.736	0.74059	30.585	30.386	31.127	-0.15007					26	17	3	0	0	0	0.024747	1	1957	1957		21.78	5.8598	1	210980	+		13602	36994	9551	9569	14927	14927					0.02956074882786197
EPLLKIAID	9	Unmodified	_EPLLKIAID_					0	0	0			REV__ENSG00000115841|ENST00000354545|RMDN2;REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3108825683594	2	506.307875	1010.6012	-1.0885	-0.00055113	1.7715	0.00089692	0.68297	0.00034579	506.8104234050482	48.838	0.64367	48.558	48.112	48.756	-0.27977					26	17	2	0	0	0	0.024397	1	4795	4795		31.53	0	1	87772	+		13603	22236;36587	9552	9570	14928	14928					0.0963208427989457
EPLLKLLPD	9	Unmodified	_EPLLKLLPD_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2689208984375	2	519.3157	1036.61685	0.92425	0.00047998	-4.0833	-0.0021205	-3.1591	-0.0016405	519.3134559398612	74.147	1.7537	74.147	73.362	75.116	0					52	42	2	0	0	0	0.024397	1	9193	9193		47.657	1.7054	1	1006400			13604	9890	9553	9571	14929	14929					0.10000370796956304
EPLLLQRPE	9	Unmodified	_EPLLLQRPE_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MSMS	OPSCC_39_ClassI_Rep-1	1	547.8132934570312	2	547.813856	1093.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.584	1	56.584	56.084	57.084	0								0	0	0	0.13392	1	6317	6317		84.916	18.486	1				13605	6545	9554	9572	14930	14930					0.07009701023071102
EPLLLQRPE	9	Unmodified	_EPLLLQRPE_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MSMS	OPSCC_39_ClassI_Rep-1	1	547.8135375976562	2	547.813856	1093.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.717	1	56.717	56.217	57.217	0								0	0	0	0.083023	1	6340	6340		96.19	8.4361	1				13606	6545	9554	9572	14931	14931					0.07009701023071102
EPLLLQRPE	9	Unmodified	_EPLLLQRPE_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MSMS	OPSCC_39_ClassI_Rep-2	2	547.8137817382812	2	547.813856	1093.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.712	1	56.547	56.047	57.047	-0.16431								0	0	0	0.13392	1	6305	6305		84.916	8.1414	1				13607	6545	9554	9572	14932	14932					0.07009701023071102
EPLLLQRPE	9	Unmodified	_EPLLLQRPE_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MSMS	OPSCC_39_ClassI_Rep-3	3	547.8135986328125	2	547.813856	1093.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.443	1	56.541	56.041	57.041	0.097893								0	0	0	0.083023	1	6215	6215		96.19	8.4361	1				13608	6545	9554	9572	14933	14933					0.07009701023071102
EPLLNYLKV	9	Unmodified	_EPLLNYLKV_					0	0	0			REV__ENSG00000198650|ENST00000355962|TAT	REV__ENSG00000198650|ENST00000355962|TAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8312377929688	2	544.82115	1087.62775	-0.62005	-0.00033781	0.59783	0.00032571	-0.022215	-1.2103E-05	544.8213177074226	71.383	0.90475	71.394	70.937	71.842	0.010735					77	23	4	0	0	0	0.024436	1	8570	8570		38.806	27.295	1	3675700	+		13609	28445	9555	9573	14934	14934					0.08743773171249813
EPLLPEDQ	8	Unmodified	_EPLLPEDQ_					0	0	0		nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.7625732421875	2	470.73474	939.454927	-0.040717	-1.9167E-05	-2.7123	-0.0012768	-2.753	-0.0012959	470.73335498906613	35.788	0.80659	35.59	35.366	36.172	-0.19829					50	22	3	0	0	0	0.027866	1	2737	2737		68.787	0	1	1691400			13610	18242	9556	9574	14935	14935					-0.017222179559894357
EPLLPKEKP	9	Unmodified	_EPLLPKEKP_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2765502929688	2	525.813325	1049.6121	-0.4914	-0.00025838	0.19346	0.00010172	-0.29794	-0.00015666	525.8132106145988	94.179	0.72263	94.185	93.811	94.533	0.0059814					41	17	3	0	0	0	0.024374	1	11948	11948		40.778	0	1	548370			13611	10806	9557	9575	14936	14936					0.089274866542155
EPLPGLPGRW	10	Unmodified	_EPLPGLPGRW_					0	0	0			REV__ENST00000357355.7_1_19:14519317-14519449:+|nuORF	REV__ENST00000357355.7_1_19:14519317-14519449:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7822875976562	2	561.308741	1120.60293	-0.097502	-5.4729E-05	-1.4471	-0.00081229	-1.5446	-0.00086702	561.3080138196457	64.431	0.5108	64.228	64.028	64.539	-0.20254					21	12	2	0	0	0	0.03519	1	7368	7368		27.882	15.676	1	186070	+		13612	30828	9558	9576	14937	14937					0.047451380885149774
EPLPGLPGRW	10	Unmodified	_EPLPGLPGRW_					0	0	0			REV__ENST00000357355.7_1_19:14519317-14519449:+|nuORF	REV__ENST00000357355.7_1_19:14519317-14519449:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	561.308741	1120.60293	-0.71091	-0.00039904	-1.0348	-0.00058082	-1.7457	-0.00097986	561.3083348265127	64.527	0.50433	64.272	63.999	64.504	-0.25562	0.021768	0.0002812	NaN	26.693	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166030	+		13613	30828	9558	9576							0.047451380885149774
EPLPRSAE	8	Unmodified	_EPLPRSAE_					0	0	0			REV__nc|ENSG00000159884|Q8WV48-5|CCDC107	REV__nc|ENSG00000159884|Q8WV48-5|CCDC107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2510070800781	2	449.735074	897.455596	-0.34909	-0.000157	2.2026	0.00099059	1.8535	0.0008336	449.73527539126115	35.292	0.69103	35.337	35.05	35.741	0.044056					20	17	2	0	0	0	0.027866	1	2663	2663		35.618	2.8059	1	93677	+		13614	25279	9559	9577	14938	14938					0.0027662148371518924
EPLPVVRIP	9	Unmodified	_EPLPVVRIP_					0	0	0		ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2848205566406	2	510.316035	1018.61752	0.09236	4.7133E-05	-0.069153	-3.529E-05	0.023207	1.1843E-05	510.81812957428576	86.963	0.20871	86.963	86.775	86.984	0					5	4	2	0	0	0	0.024487	1	10932	10932		31.955	0	1	24025			13615	9167	9560	9578	14939	14939					0.10895210236662933
EPLQERFF	8	Unmodified	_EPLQERFF_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.83447265625	2	533.271824	1064.5291	-0.69191	-0.00036898	-2.8609	-0.0015256	-3.5528	-0.0018946	533.270288247491	81.273	0.83931	81.131	80.817	81.656	-0.14249					27	19	2	0	0	0	0.027866	1	9733	9733		38.806	0	1	270220			13616	5229	9561	9579	14940	14940					-0.0005883007379452465
EPLQLSHLL	9	Unmodified	_EPLQLSHLL_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1;REV__ENST00000309865.11_1_16:22482951-22501641:+|nuORF	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.8062133789062	2	525.303124	1048.5917	0.10849	5.6988E-05	-1.0654	-0.00055965	-0.95691	-0.00050267	525.3024820829097	47.427	0.97808	47.274	46.659	47.637	-0.15301					69	26	4	0	0	0	0.023454	1	4660	4660		71.877	13.648	1	1863300	+		13617	25112;30170	9562	9580	14941	14941					0.06934315994385543
EPLQMTWGV	9	Unmodified	_EPLQMTWGV_					0	0	0		PPP6R1|p.M346V|1|0.24|ENSG00000105063|chr19:55241364-55241364|T/C|missense_variant	PPP6R1|p.M346V|1|0.24|ENSG00000105063|chr19:55241364-55241364|T/C|missense_variant	PPP6R1|p.M346V|1|0.24|ENSG00000105063|chr19:55241364-55241364|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.7583618164062	2	530.760235	1059.50592	-0.84082	-0.00044628	-2.2323	-0.0011848	-3.0731	-0.0016311	530.758924175091	96.829	1.243	96.829	96.44	97.683	0					62	27	4	0	0	0	0.35646	1	12351	12351		68.787	3.3214	1	585380			13618	18989	9563	9581	14942	14942					-0.021455921827737257
EPLRETVV	8	Unmodified	_EPLRETVV_					0	0	0			REV__ENST00000518357.1_1_5:169758569-169760446:+|nuORF	REV__ENST00000518357.1_1_5:169758569-169760446:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.76629638671875	2	471.766374	941.518196	0.12405	5.8522E-05	0.22993	0.00010847	0.35398	0.00016699	471.766234002956	76.499	0.62695	76.231	75.968	76.595	-0.26806					24	14	2	0	0	0	0.81662	1	9075	9075		57.811	4.4598	1	952080	+		13619	34231	9564	9582	14943	14943					0.04509767551905952
EPLRGGPES	9	Unmodified	_EPLRGGPES_					0	0	0			REV__nc|ENSG00000068831|Q7LDG7-2|RASGRP2	REV__nc|ENSG00000068831|Q7LDG7-2|RASGRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7874755859375	2	471.237981	940.461409	0.9462	0.00044589	3.3475	0.0015775	4.2937	0.0020234	471.2393270475964	55.733	0.35366	55.733	55.573	55.927	0					12	9	2	0	0	0	0.024261	1	6202	6202		64.207	9.431	1	95585	+		13620	36467	9565	9583	14944	14944					-0.011202800046021366
EPLRGKESSL	10	Unmodified	_EPLRGKESSL_					0	0	0			REV__ENST00000597589.5_1_19:47177782-47200527:-|nuORF	REV__ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.314208984375	2	558.306395	1114.59824	-0.6691	-0.00037356	4.3435	0.002425	3.6744	0.0020514	558.3087325104336	67.059	0.78848	66.777	66.525	67.314	-0.28148					48	19	3	0	0	0	0.45418	1	7964	7964		93.143	13.431	1	3077000	+		13621	21508	9566	9584	14945	14945					0.04552209155122
EPLRGKESSL	10	Unmodified	_EPLRGKESSL_					0	0	0			REV__ENST00000597589.5_1_19:47177782-47200527:-|nuORF	REV__ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.317626953125	2	558.306395	1114.59824	-0.1757	-9.8094E-05	3.4884	0.0019476	3.3127	0.0018495	558.3083162180644	66.768	0.91338	66.792	66.517	67.43	0.023903					53	21	5	0	0	0	0.52765	1	7893	7893		85.161	2.9203	1	2291600	+		13622	21508	9566	9584	14946	14946					0.04552209155122
EPLRGPMS	8	Unmodified	_EPLRGPMS_					0	0	0		ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.29193115234375	2	443.726195	885.437837	-0.30054	-0.00013336	-1.5768	-0.00069968	-1.8774	-0.00083303	443.7266830424885	33.383	0.27826	33.152	33.036	33.314	-0.23107					8	6	2	0	0	0	0.027866	1	2396	2396		21.96	0	1	38758			13623	2128	9567	9585	14947	14947					-0.009464170427804675
EPLRPLGF	8	Unmodified	_EPLRPLGF_					0	0	0			REV__ENSG00000106211|ENST00000248553|HSPB1	REV__ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2919921875	2	464.766178	927.517802	-0.24308	-0.00011298	1.0196	0.00047388	0.77652	0.0003609	464.7657361675424	61.159	0.30421	60.946	60.756	61.06	-0.2134					12	7	2	0	0	0	0.027866	1	7031	7031		20.482	0	1	84936	+		13624	21600	9568	9586	14948	14948					0.051143926227155134
EPLRRRAE	8	Unmodified	_EPLRRRAE_					0	0	0		ENST00000466569.1_1_13:96285564-96294263:-|nuORF	ENST00000466569.1_1_13:96285564-96294263:-|nuORF	ENST00000466569.1_1_13:96285564-96294263:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.837158203125	2	513.793789	1025.57303	-0.011429	-5.8721E-06	2.6699	0.0013718	2.6585	0.0013659	513.7956927739284	68.404	0.18442	68.423	68.314	68.499	0.018913					7	4	2	0	0	0	0.027866	1	8117	8117		17.365	0	1	58905			13625	14814	9569	9587	14949	14949					0.061261991431820206
EPLSKSKHS	9	Unmodified	_EPLSKSKHS_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3083190917969	2	506.774731	1011.53491	-0.065449	-3.3168E-05	-1.0687	-0.00054158	-1.1341	-0.00057475	506.7740515280521	42.139	0.67427	42.016	41.853	42.527	-0.12299					26	17	2	0	0	0	0.024427	1	3848	3848		26.693	7.3329	1	142150			13626	3694	9570	9588	14950	14950					0.029602684378687627
EPLSKSKHS	9	Unmodified	_EPLSKSKHS_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.774731	1011.53491	-0.52055	-0.0002638	0.12684	6.4278E-05	-0.39371	-0.00019952	506.77471099478936	42.563	0.6936	42.331	41.837	42.53	-0.23186	0.096426	0.00040772	NaN	19.997	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193180			13627	3694	9570	9588							0.029602684378687627
EPLSKSKHS	9	Unmodified	_EPLSKSKHS_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.774731	1011.53491	-0.51302	-0.00025998	-0.11641	-5.8996E-05	-0.62943	-0.00031898	506.77452737160235	42.583	0.69412	42.357	41.903	42.597	-0.22597	0.12215	0.00016117	NaN	19.997	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157720			13628	3694	9570	9588							0.029602684378687627
EPLSNSLKI	9	Unmodified	_EPLSNSLKI_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7840576171875	2	500.787307	999.560061	0.18493	9.261E-05	0.14394	7.2084E-05	0.32887	0.00016469	500.78716457437565	72.458	0.55134	72.193	72.001	72.553	-0.26479					21	12	2	0	0	0	0.024374	1	8504	8504		49.442	13.823	1	891300			13629	8745	9571	9589	14951	14951					0.060263232404167866
EPLSRKGLL	9	Unmodified	_EPLSRKGLL_					0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.8104248046875	2	506.811116	1011.60768	-0.25593	-0.00012971	0.16682	8.4548E-05	-0.089102	-4.5158E-05	506.8110374060778	64.302	1.0749	64.074	63.74	64.815	-0.22774					54	26	4	0	0	0	0.15029	1	7288	7288		99.375	0	1	2217500	+		13630	25424	9572	9590	14952	14952					0.10234022231293238
EPLSTCSDD	9	Unmodified	_EPLSTCSDD_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2824401855469	2	483.689672	965.364791	0.038739	1.8738E-05	-3.0909	-0.001495	-3.0522	-0.0014763	483.68792715356494	42.167	0.49049	41.937	41.725	42.216	-0.2303					21	13	2	0	0	0	0.024523	1	3739	3739		29.15	11.785	1	154730			13631	18116	9573	9591	14953	14953					-0.11927635346739862
EPLSTCSDD	9	Unmodified	_EPLSTCSDD_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.689672	965.364791	0.11214	5.4242E-05	-3.5688	-0.0017262	-3.4567	-0.0016719	483.68795095405414	42.18	0.34206	42.057	41.853	42.195	-0.12299	0.050854	-0.00038746	NaN	53.351	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70292			13632	18116	9573	9591							-0.11927635346739862
EPLSTCSDD	9	Unmodified	_EPLSTCSDD_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.689672	965.364791	-0.4871	-0.00023561	-2.527	-0.0012223	-3.0141	-0.0014579	483.6881559140512	42.256	0.33054	42.024	41.904	42.234	-0.23186	0.0184	0.00062034	NaN	53.351	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140440			13633	18116	9573	9591							-0.11927635346739862
EPLSTPHDPS	10	Unmodified	_EPLSTPHDPS_					0	0	0			REV__ENSG00000103534|ENST00000542583|TMC5	REV__ENSG00000103534|ENST00000542583|TMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.2901000976562	2	540.253828	1078.4931	-1.3342	-0.00072082	0.54347	0.00029361	-0.79075	-0.0004272	540.2533671495074	66.405	0.30109	66.16	66.05	66.351	-0.24517					12	7	2	0	0	0	0.03519	1	7636	7636		40.778	7.9657	1	89832	+		13634	21393	9574	9592	14954	14954					-0.04300332041339061
EPLSTSPRSY	10	Unmodified	_EPLSTSPRSY_					0	0	0			REV__ENSG00000276240|ENST00000641792|OR4E1	REV__ENSG00000276240|ENST00000641792|OR4E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.2540893554688	2	568.782753	1135.55095	-0.35538	-0.00020213	-3.3276	-0.0018927	-3.683	-0.0020948	568.7812683404153	31.08	0.20185	30.895	30.743	30.945	-0.18503					6	4	2	0	0	0	0.03519	1	2009	2009		40.778	15.328	1	33694	+		13635	29200	9575	9593	14955	14955					-0.011400701159118398
EPLTEAEASE	10	Unmodified	_EPLTEAEASE_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2489013671875	2	538.243126	1074.4717	-0.59003	-0.00031758	2.6897	0.0014477	2.0996	0.0011301	538.2453152102514	55.755	1.2862	55.599	55.293	56.58	-0.15601					93	34	5	0	0	0	0.82838	1	6201	6201		58.782	3.2778	1	11106000			13636	984	9576	9594	14956	14956					-0.06255761860688835
EPLTGTTGLTF	11	Unmodified	_EPLTGTTGLTF_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.2872924804688	2	568.795329	1135.5761	0.37833	0.00021519	0.79497	0.00045218	1.1733	0.00066737	568.7954659342206	68.969	0.69447	68.726	68.47	69.164	-0.24277					40	16	3	0	0	0	0.024795	1	8005	8005		42.864	0	1	687070	+		13637	22381	9577	9595	14957	14957					0.013739846866428707
EPLVKFVFID	10	Unmodified	_EPLVKFVFID_					0	0	0			REV__ENSG00000115594|ENST00000410023|IL1R1	REV__ENSG00000115594|ENST00000410023|IL1R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	402.2110290527344	3	402.897147	1205.66961	0.49592	0.0001998	0.68216	0.00027484	1.1781	0.00047465	402.89719991163486	36.105	2.2038	36.105	35.531	37.735	0					115	59	3	0	0	0	0.03519	1	2804	2804		3.6191	0	1	1137600	+		13638	22215	9578	9596	14958	14958					0.07500328859759975
EPLVRQVL	8	Unmodified	_EPLVRQVL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.2933654785156	2	477.292559	952.570566	-0.26305	-0.00012555	0.25229	0.00012042	-0.010758	-5.1349E-06	477.29256763116416	53.576	0.89512	53.44	53.095	53.99	-0.13617					73	26	4	0	0	0	0.56067	3	5628	5615;5628;5641		79.939	14.136	1	8611900			13639	2963	9579	9597	14959;14960;14961	14960					0.09238350685518526
EPLVRQVL	8	Unmodified	_EPLVRQVL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.2926330566406	2	477.292559	952.570566	-0.18223	-8.6977E-05	0.068873	3.2872E-05	-0.11336	-5.4105E-05	477.292468429705	53.724	1.0148	53.479	53.088	54.103	-0.2453					73	30	4	0	0	0	0.59392	3	5634	5623;5634;5658		76.847	2.8719	1	7478000			13640	2963	9579	9597	14962;14963;14964	14963					0.09238350685518526
EPLVRQVL	8	Unmodified	_EPLVRQVL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.2925720214844	2	477.292559	952.570566	-0.1925	-9.1877E-05	-0.014394	-6.8701E-06	-0.20689	-9.8747E-05	477.29245057855684	53.641	0.75879	53.444	53.163	53.922	-0.19739					71	22	5	0	0	0	0.78609	1	5633	5633		60.294	2.4827	1	7688300			13641	2963	9579	9597	14965	14965					0.09238350685518526
EPLYSKVHC	9	Unmodified	_EPLYSKVHC_					0	0	0		ENST00000360772.7_2_3:123332334-123332625:-|nuORF	ENST00000360772.7_2_3:123332334-123332625:-|nuORF	ENST00000360772.7_2_3:123332334-123332625:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.801025390625	2	538.265684	1074.51682	0.055543	2.9897E-05	-1.7834	-0.00095994	-1.7279	-0.00093005	538.2654156708534	88.03	0.201	88.048	87.909	88.11	0.018555					6	4	2	0	0	0	0.023635	1	10998	10998		76.774	0	1	21316			13642	12776	9580	9598	14966	14966					-0.01746189808500276
EPMEALNTAQ	10	Unmodified	_EPMEALNTAQ_					0	0	0		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.7935791015625	2	552.255514	1102.49647	-0.31138	-0.00017196	-2.4648	-0.0013612	-2.7762	-0.0015332	552.2555833875322	66.447	0.1162	66.198	66.101	66.217	-0.24839					4	2	2	0	0	0	0.03519	1	7606	7606		27.047	6.1004	1	33213			13643	7352	9581	9599	14967	14967					-0.05067405259001134
EPMEVEEGE	9	Unmodified	_EPMEVEEGE_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2542114257812	2	524.710605	1047.40666	-1.3744	-0.00072117	1.8087	0.00094906	0.43432	0.00022789	524.7114413062267	38.699	0.37397	38.534	38.251	38.625	-0.16458					13	9	2	0	0	0	0.024477	1	3197	3197		35.618	18.913	1	106820			13644	1528	9582	9600	14968	14968					-0.11515079658192917
EPMGITLKL	9	Unmodified	_EPMGITLKL_					0	0	0		nc|ENSG00000130830|Q00013-2|MPP1;nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2906188964844	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.23085	4	10671	10610;10658;10671;10684		84.916	16.129	1	8460100			13645	4469;14971	9583	9601	14969;14970;14971;14972	14971					0.06244455373735036
EPMGITLKL	9	Unmodified	_EPMGITLKL_					0	0	0		nc|ENSG00000130830|Q00013-2|MPP1;nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2905578613281	2	501.288628	1000.5627	-0.38964	-0.00019532	3.5736	0.0017914	3.184	0.0015961	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.17822	3	10623	10623;10636;10648		93.195	5.4412	1	8504000			13646	4469;14971	9583	9601	14973;14974;14975	14973					0.06244455373735036
EPMGITLKL	9	Unmodified	_EPMGITLKL_					0	0	0		nc|ENSG00000130830|Q00013-2|MPP1;nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2904357910156	2	501.288628	1000.5627	-0.5165	-0.00025891	3.5401	0.0017746	3.0236	0.0015157	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.17822	6	10570	10546;10558;10570;10583;10596;10636		93.195	7.6702	1	8326900			13647	4469;14971	9583	9601	14976;14977;14978;14979;14980;14981	14978					0.06244455373735036
EPMIGGWLP	9	Unmodified	_EPMIGGWLP_					0	0	0			REV__ENST00000534503.5_1_11:60223398-60231282:+|nuORF	REV__ENST00000534503.5_1_11:60223398-60231282:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.77685546875	2	500.252046	998.489538	-0.94031	-0.00047039	-3.6518	-0.0018268	-4.5921	-0.0022972	500.7534899837196	61.157	0.20606	60.981	60.874	61.08	-0.1761					7	4	2	0	0	0	0.024	1	6844	6844		55.504	10.973	1	24044	+		13648	34641	9584	9602	14982	14982					-0.009766733488845603
EPMIGVNQELA	11	Unmodified	_EPMIGVNQELA_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.576904296875	3	400.869151	1199.58562	0.97477	0.00039076	-3.0045	-0.0012044	-2.0297	-0.00081364	400.8679233293514	17.769	0.49285	17.627	17.453	17.946	-0.14278					15	9	3	0	0	0	0.024736	1	197	197		25.126	0	1	45139		+	13649	505	9585	9603	14983	14983					-0.006185702994343956
EPMKLKPGKLK	11	Unmodified	_EPMKLKPGKLK_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	635.3853149414062	2	634.891583	1267.76861	0.12287	7.8009E-05	0.92392	0.00058659	1.0468	0.0006646	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	0.9728	1	13048	13048		42.864	17.29	1	1729500	+		13650	22797	9586	9604	14984	14984					0.1454402855299577
EPMLCPIHP	9	Unmodified	_EPMLCPIHP_					0	0	0			REV__ENST00000483925.1_1_2:86343697-86346172:+|nuORF	REV__ENST00000483925.1_1_2:86343697-86346172:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8271484375	2	518.751356	1035.48816	-0.16558	-8.5895E-05	-0.3163	-0.00016408	-0.48188	-0.00024998	518.750826200411	34.813	0.63705	34.606	34.406	35.043	-0.20696					29	15	3	0	0	0	0.024386	1	2626	2626		25.45	7.1258	1	273630	+		13651	23263	9587	9605	14985	14985					-0.028166307092988063
EPMLEFFY	8	Unmodified	_EPMLEFFY_					0	0	0			REV__ENST00000503335.6_1_5:126626657-126667083:+|nuORF	REV__ENST00000503335.6_1_5:126626657-126667083:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2429809570312	2	538.243886	1074.47322	-0.59003	-0.00031758	1.2773	0.00068753	0.68732	0.00036995	538.2453152102514	55.755	1.2862	55.599	55.293	56.58	-0.15601					93	34	5	0	0	0	0.56067	1	6130	6130		79.939	2.6216	1	11106000	+		13652	32128	9588	9606	14986	14986					-0.06103799305628854
EPMLETPLQW	10	Unmodified	_EPMLETPLQW_					0	0	0		ENSG00000057663|ENST00000369076|ATG5;nc|ENSG00000057663|Q9H1Y0-2|ATG5	ENSG00000057663|ENST00000369076|ATG5	ENSG00000057663|ENST00000369076|ATG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.2069396972656	3	415.205763	1242.59546	0.0045056	1.8707E-06	3.2295	0.0013409	3.234	0.0013428	415.20704646949923	36.792	0.78199	36.599	36.294	37.076	-0.193					61	19	4	0	0	0	1.0271	1	2906	2906		31.634	0	1	1730200			13653	1205	9589	9607	14987	14987					-0.01613382294067378
EPMPRGVVKL	10	Unmodified	_EPMPRGVVKL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8460083007812	2	563.326076	1124.6376	-1.105	-0.0006225	-2.6598	-0.0014983	-3.7648	-0.0021208	563.3245103247327	62.686	0.71621	62.686	62.409	63.126	0					32	17	2	0	0	0	0.03519	1	7335	7335		60.118	39.171	1	1320400	+		13654	25017;36804	9590	9608	14988	14988					0.08026637904981726
EPMRLIGH	8	Unmodified	_EPMRLIGH_					0	0	0			REV__ENST00000520717.1_1_8:121824076-121824890:-|nuORF	REV__ENST00000520717.1_1_8:121824076-121824890:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7814025878906	2	476.755287	951.496021	0.30777	0.00014673	4.115	0.0019618	4.4227	0.0021086	476.7578262431079	102.04	0.72271	102.04	101.74	102.46	0.0073471					23	16	2	0	0	0	0.027866	1	13021	13021		26.796	4.8362	1	97232	+		13655	34224	9591	9609	14989	14989					0.018332646025100985
EPMVHLRLE	9	Unmodified	_EPMVHLRLE_					0	0	0		ENSG00000140365|ENST00000267935|COMMD4;ENST00000566843.1_1_15:75631960-75632245:+|nuORF;ENST00000565834.1_1_15:75631960-75632343:+|nuORF	ENSG00000140365|ENST00000267935|COMMD4	ENSG00000140365|ENST00000267935|COMMD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.0005493164062	2	562.300059	1122.58556	0.072116	4.0551E-05	-4.1733	-0.0023467	-4.1012	-0.0023061	562.2961906226035	20.766	0.33959	20.599	20.444	20.784	-0.16774					19	6	4	0	0	0	0.024527	1	572	572		24.519	0	1	41182			13656	5403	9592	9610	14990	14990					0.02917474491187022
EPNEPKEIV	9	Unmodified	_EPNEPKEIV_					0	0	0			REV__ENSG00000113494|ENST00000618457|PRLR	REV__ENSG00000113494|ENST00000618457|PRLR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2794189453125	2	527.774396	1053.53424	0.24156	0.00012749	-2.1435	-0.0011313	-1.9019	-0.0010038	527.7730759859273	70.301	1.6169	70.087	68.818	70.435	-0.21424					75	40	4	0	0	0	0.024418	1	8016	8016		30.318	0	1	844590	+		13657	22069	9593	9611	14991	14991					0.009614289981300317
EPNEQFRW	8	Unmodified	_EPNEQFRW_					0	0	0			REV__ENSG00000131781|ENST00000254090|FMO5	REV__ENSG00000131781|ENST00000254090|FMO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.830322265625	2	553.256705	1104.49886	-0.50106	-0.00027721	-0.58858	-0.00032564	-1.0896	-0.00060285	553.2560465851509	89.963	0.58174	89.836	89.543	90.125	-0.12711					31	13	3	0	0	0	0.027866	1	11015	11015		23.042	2.0956	1	78492	+		13658	23234	9594	9612	14992	14992					-0.04921188739012905
EPNLEVGTND	10	Unmodified	_EPNLEVGTND_					0	0	0		N4BP2|p.I912V|1|0.26|ENSG00000078177|chr4:40120845-40120845|A/G|missense_variant	N4BP2|p.I912V|1|0.26|ENSG00000078177|chr4:40120845-40120845|A/G|missense_variant	N4BP2|p.I912V|1|0.26|ENSG00000078177|chr4:40120845-40120845|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2980346679688	2	544.248743	1086.48293	-0.12695	-6.9094E-05	1.6423	0.00089383	1.5154	0.00082474	544.2493529714314	23.93	0.70885	23.715	23.425	24.134	-0.2151					31	15	3	0	0	0	0.03519	1	1032	1032		36.447	0	1	89675			13659	18017	9595	9613	14993	14993					-0.05684939766547359
EPNLFTCSIFN	11	Unmodified	_EPNLFTCSIFN_					0	0	0			REV__ENSG00000197651|ENST00000358859|CCER1	REV__ENSG00000197651|ENST00000358859|CCER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	642.80224609375	2	642.800088	1283.58562	0.89929	0.00057806	2.1042	0.0013526	3.0035	0.0019306	642.8013949704122	36.718	1.3436	36.509	36.201	37.545	-0.2092					80	33	4	0	0	0	0.99147	1	2874	2874		29.17	0	1	2190400	+		13660	28335	9596	9614	14994	14994					-0.044825702994558014
EPNLRKLIQ	9	Unmodified	_EPNLRKLIQ_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.83544921875	2	555.835123	1109.65569	0.3919	0.00021783	3.6852	0.0020484	4.0771	0.0022662	556.3390798342774	106.45	0.37006	106.29	106.09	106.46	-0.16132					30	17	2	0	0	0	0.94809	1	13235	13235		29.15	0	1	132790	+		13661	22830	9597	9615	14995	14995					0.10525096151332036
EPNLTSDASV	10	Unmodified	_EPNLTSDASV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.7476806640625	2	516.745836	1031.47712	0.38612	0.00019953	3.3191	0.0017151	3.7052	0.0019147	516.747421130384	63.713	0.98812	63.455	63.162	64.15	-0.25824					74	25	4	0	0	0	0.83673	1	7205	7205		58.23	4.8785	1	4591400			13662	10133	9598	9616	14996	14996					-0.03736038278225351
EPNQTLGLLI	10	Unmodified	_EPNQTLGLLI_					0	0	0			REV__nc|ENSG00000181958|Q8NGL6|OR4A15	REV__nc|ENSG00000181958|Q8NGL6|OR4A15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3121948242188	2	549.313689	1096.61282	-0.61912	-0.00034009	-1.9664	-0.0010802	-2.5855	-0.0014203	549.312457972932	19.442	0.53863	19.323	19.101	19.64	-0.11872					33	10	4	0	0	0	0.96965	1	410	410		49.442	5.0644	1	409270	+		13663	27438	9599	9617	14997	14997					0.0683828130324855
EPNRMVAR	8	Unmodified	_EPNRMVAR_					0	0	0			REV__ENSG00000198825|ENST00000650623|INPP5F	REV__ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2999572753906	2	486.755818	971.497083	-0.36174	-0.00017608	2.0463	0.00099607	1.6846	0.00081999	486.7573291240781	68.94	0.44807	68.94	68.754	69.202	0					13	11	2	0	0	0	0.027866	1	8300	8300		24.203	0	1	79710	+		13664	28490	9600	9618	14998	14998					0.010194789713978025
EPNSRYTYKL	10	Unmodified	_EPNSRYTYKL_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5180969238281	3	424.21906	1269.63535	-0.34182	-0.00014501	0.05434	2.3052E-05	-0.28748	-0.00012195	424.21892069706536	30.818	0.62004	30.64	30.41	31.03	-0.17818					23	14	2	0	0	0	0.03519	1	1998	1998		47.228	21.164	1	111660			13665	1082	9601	9619	14999	14999					0.011318807008592557
EPNSTKDGHS	10	Unmodified	_EPNSTKDGHS_					0	0	0			REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.826416015625	2	536.238709	1070.46287	-0.31456	-0.00016868	-3.6497	-0.0019571	-3.9642	-0.0021258	536.2365815016727	42.918	0.35993	42.948	42.721	43.081	0.029732					19	9	3	0	0	0	0.03519	1	3908	3908		36.447	10.873	1	139700	+		13666	24624	9602	9620	15000	15000					-0.06954690706515976
EPNSTKDGHS	10	Unmodified	_EPNSTKDGHS_					0	0	0			REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.238709	1070.46287	-0.49955	-0.00026788	-2.5931	-0.0013905	-3.0926	-0.0016584	536.2372817667523	42.979	0.35963	42.84	42.667	43.027	-0.13929	-0.049975	0.00050942	NaN	36.447	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111200	+		13667	24624	9602	9620							-0.06954690706515976
EPNSTKDGHS	10	Unmodified	_EPNSTKDGHS_					0	0	0			REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.238709	1070.46287	-0.34594	-0.00018551	-3.8315	-0.0020546	-4.1775	-0.0022401	536.2369320605521	42.994	0.34085	42.881	42.693	43.034	-0.11253	-0.0081767	-0.00081882	NaN	36.447	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126460	+		13668	24624	9602	9620							-0.06954690706515976
EPPAKSPIN	9	Unmodified	_EPPAKSPIN_					0	0	0		ENST00000484212.5_1_7:115752068-115799936:-|nuORF	ENST00000484212.5_1_7:115752068-115799936:-|nuORF	ENST00000484212.5_1_7:115752068-115799936:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7608642578125	2	476.758549	951.502546	3.1342	0.0014943	2.0281	0.00096691	5.1623	0.0024612	476.7593136802474	19.164	0.64227	19.23	18.995	19.637	0.066195					26	12	3	0	0	0	0.6238	1	362	362		51.193	6.6616	1	255920			13669	15297	9603	9621	15001	15001					0.0248548103485291
EPPAQILPSA	10	Unmodified	_EPPAQILPSA_					0	0	0		ENST00000476846.1_7:111503332-111846439:-|nuORF	ENST00000476846.1_7:111503332-111846439:-|nuORF	ENST00000476846.1_7:111503332-111846439:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	511.7757263183594	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.088	1	16.88	16.38	17.38	-0.20777								0	0	0	0.76229	1	133	133		23.523	6.8177	1				13670	15100	9604	9622	15002	15002					0.03450036723370431
EPPARALKRSL	11	Unmodified	_EPPARALKRSL_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2501525878906	3	413.250695	1236.73025	0.58179	0.00024042	-1.9966	-0.00082508	-1.4148	-0.00058466	413.2496562279006	100.27	0.48602	100.14	99.971	100.46	-0.13364					30	14	3	0	0	0	1.0592	1	12443	12443		20.315	4.3082	1	358700			13671	1083	9605	9623	15003	15003					0.12135858962687962
EPPARRTL	8	Unmodified	_EPPARRTL_					0	0	0			REV__ENSG00000183186|ENST00000332235|C2CD4C	REV__ENSG00000183186|ENST00000332235|C2CD4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.76837158203125	2	470.272158	938.529764	0.10754	5.0571E-05	-1.3587	-0.00063897	-1.2512	-0.0005884	470.271649160239	48.119	0.76736	48.186	47.685	48.452	0.066795					38	21	3	0	0	0	0.027866	1	4830	4830		44.117	6.9577	1	1623700	+		13672	27550	9606	9624	15004	15004					0.05804009365908769
EPPDKNPIRCE	11	Unmodified	_EPPDKNPIRCE_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2537841796875	3	433.211688	1296.61324	-0.38015	-0.00016469	3.2796	0.0014208	2.8995	0.0012561	433.21285222386575	28.644	0.76134	28.64	28.286	29.047	-0.0042019					32	17	3	0	0	0	0.024768	1	1685	1685		43.419	10.379	1	155290			13673	3980	9607	9625	15005	15005					-0.023206670392255546
EPPDKNPIRCE	11	Unmodified	_EPPDKNPIRCE_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	433.211688	1296.61324	0.20649	8.9456E-05	3.0564	0.0013241	3.2629	0.0014135	433.21252656938236	28.488	1.1475	28.569	27.759	28.907	0.080811	-0.027219	-0.00022041	NaN	43.419	41	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106090			13674	3980	9607	9625							-0.023206670392255546
EPPDPNLFIE	10	Unmodified	_EPPDPNLFIE_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2822265625	2	585.787504	1169.56045	-1.5171	-0.00088868	-3.6352	-0.0021295	-5.1523	-0.0030182	585.7853110311449	51.491	0.71083	51.215	51.042	51.752	-0.27643					37	18	3	0	0	0	0.03519	1	5269	5269		29.17	0	1	1195400			13675	2254	9608	9626	15006	15006					-0.017543018304195357
EPPELGAEES	10	Unmodified	_EPPELGAEES_					0	0	0			REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15	REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2412719726562	2	529.237844	1056.46113	5.246	0.0027764	-0.57332	-0.00030342	4.6727	0.002473	529.2372790410781	17.341	0.2317	17.401	17.248	17.48	0.06036					15	7	3	0	0	0	1.1267	1	125	125		29.15	3.6994	1	18889	+		13676	21135	9609	9627	15007	15007					-0.06483744515139733
EPPEPPGQAL	10	Unmodified	_EPPEPPGQAL_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2929077148438	2	517.761289	1033.50803	-0.79813	-0.00041324	-3.8748	-0.0020062	-4.6729	-0.0024194	517.7593608256877	32.142	1.3464	32.142	31.749	33.096	0					64	34	2	0	0	0	0.03519	1	2189	2189		44.377	7.9304	1	245020	+		13677	21072	9610	9628	15008	15008					-0.007388401733351202
EPPEPPGQAL	10	Unmodified	_EPPEPPGQAL_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2927856445312	2	517.761289	1033.50803	-0.5551	-0.00028741	-3.9548	-0.0020476	-4.5099	-0.002335	517.7593194259737	32.248	1.3848	32.259	31.663	33.048	0.011799					65	35	2	0	0	0	0.03519	1	2144	2144		47.96	3.5823	1	205630	+		13678	21072	9610	9628	15009	15009					-0.007388401733351202
EPPGLEAAEAP	11	Unmodified	_EPPGLEAAEAP_					0	0	0		nc|ENSG00000165238|Q9Y3S1-3|WNK2;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7642822265625	2	540.764029	1079.5135	-0.15462	-8.3614E-05	0.78863	0.00042646	0.634	0.00034285	540.7643553531553	49.856	1.6841	49.751	49.373	51.057	-0.10558					123	44	5	0	0	0	0.81602	1	5056	5056		56.721	10.749	1	11601000			13679	7384	9611	9629	15010	15010					-0.02307161381554579
EPPGLEAAEAP	11	Unmodified	_EPPGLEAAEAP_					0	0	0		nc|ENSG00000165238|Q9Y3S1-3|WNK2;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.764892578125	2	540.764029	1079.5135	-0.2368	-0.00012805	0.8826	0.00047728	0.6458	0.00034922	540.7643940942081	50.096	1.755	49.816	49.397	51.152	-0.27977					119	46	4	0	0	0	0.96599	1	5050	5050		44.377	7.2181	1	11668000			13680	7384	9611	9629	15011	15011					-0.02307161381554579
EPPGLEAAEAP	11	Unmodified	_EPPGLEAAEAP_					0	0	0		nc|ENSG00000165238|Q9Y3S1-3|WNK2;ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	nc|ENSG00000165238|Q9Y3S1-3|WNK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.76416015625	2	540.764029	1079.5135	-0.47149	-0.00025496	1.2262	0.00066307	0.75469	0.00040811	540.7645879283925	49.966	1.8384	49.785	49.383	51.222	-0.18071					122	48	4	0	0	0	0.75995	2	5037	5037;5061		60.118	7.1816	1	11458000			13681	7384	9611	9629	15012;15013	15012					-0.02307161381554579
EPPGPAASAL	10	Unmodified	_EPPGPAASAL_					0	0	0			REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.2388610839844	2	455.23745	908.460347	0.038356	1.7461E-05	-0.98909	-0.00045027	-0.95073	-0.00043281	455.23706671930125	102.8	0.63968	102.8	102.57	103.21	0					36	15	3	0	0	0	1.1329	1	13198	13198		27.882	4.8398	1	1457300	+		13682	29022	9612	9630	15014	15014					0.002455056264693667
EPPGPFVP	8	Unmodified	_EPPGPFVP_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA;AJUBA|p.I339Nfs*50|1|0.2|ENSG00000129474|chr14:22978436-22978437|-/T|frameshift_variant;AJUBA|p.R324Gfs*84|1|0.15|ENSG00000129474|chr14:22981291-22981297|GCATCCG/-|frameshift_variant	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2404479980469	2	420.218529	838.422505	0.21476	9.0246E-05	2.7557	0.001158	2.9705	0.0012482	420.21922718318234	37.227	0.49131	37.259	36.996	37.487	0.032269					21	12	3	0	0	0	0.027866	1	2945	2945		28.254	13.59	1	114990			13683	4349	9613	9631	15015	15015					-0.0031696056834107367
EPPGREAGP	9	Unmodified	_EPPGREAGP_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7590637207031	2	455.224874	908.435195	1.4847	0.00067589	1.8341	0.00083493	3.3188	0.0015108	455.22573959788315	23.224	1.003	23.033	22.526	23.529	-0.19117					27	22	2	0	0	0	0.024523	1	894	894		29.15	16.943	1	43582	+		13684	21614	9614	9632	15016	15016					-0.022685491760967125
EPPHRGPVF	9	Unmodified	_EPPHRGPVF_					0	0	0			REV__ENSG00000132622|ENST00000254963|HSPA12B	REV__ENSG00000132622|ENST00000254963|HSPA12B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.27001953125	2	518.272158	1034.52976	-0.021298	-1.1038E-05	-4.3004	-0.0022288	-4.3217	-0.0022398	518.2698076620255	25.517	0.5901	25.345	25.118	25.708	-0.17151					25	13	2	0	0	0	0.87448	1	1206	1206		34.173	5.023	1	1997900	+		13685	23299	9615	9633	15017	15017					0.013880093659054182
EPPLFIPD	8	Unmodified	_EPPLFIPD_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7641296386719	2	464.244744	926.474934	-0.99087	-0.00046001	1.434	0.00066573	0.44314	0.00020572	464.24533931688296	38.287	0.7836	38.314	37.987	38.771	0.027275					34	21	2	0	0	0	0.027866	1	3151	3151		35.201	0	1	144140			13686	3684	9616	9634	15018	15018					0.008755777746159765
EPPLLQPW	8	Unmodified	_EPPLLQPW_					0	0	0			REV__ENST00000577226.5_1_17:27237161-27239849:-|nuORF	REV__ENST00000577226.5_1_17:27237161-27239849:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2923278808594	2	490.26601	978.517468	-0.29126	-0.0001428	-4.4544	-0.0021839	-4.7457	-0.0023267	490.2638750999322	37.437	1.2186	37.469	36.878	38.097	0.032269					74	32	3	0	0	0	0.027866	1	2983	2983		40.573	17.53	1	6470800	+		13687	35476	9617	9635	15019	15019					0.027349729028514957
EPPLPGAEPP	10	Unmodified	_EPPLPGAEPP_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.78717041015625	2	502.258382	1002.50221	0.97909	0.00049176	-0.30498	-0.00015318	0.67412	0.00033858	502.2581754799159	87.434	0.38113	87.455	87.22	87.601	0.021263					11	8	2	0	0	0	0.03519	1	10922	10922		39.253	7.723	1	83243			13688	8875	9618	9636	15020	15020					0.0010606131500026095
EPPLRAAAPPD	11	Unmodified	_EPPLRAAAPPD_					0	0	0			REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.2694091796875	2	567.301113	1132.58767	-0.19354	-0.00010979	0.2967	0.00016832	0.10317	5.8527E-05	567.3012043269296	54.505	0.83587	54.354	53.984	54.82	-0.15036					45	23	4	0	0	0	0.024787	1	6010	6010		41.427	4.9799	1	1150700	+		13689	37526	9619	9637	15021	15021					0.026682265006456873
EPPLRAAAPPD	11	Unmodified	_EPPLRAAAPPD_					0	0	0			REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.301113	1132.58767	-1.0482	-0.00059467	0.74983	0.00042538	-0.29841	-0.00016929	567.3014707823692	54.343	0.68417	54.343	54.109	54.794	0	0.015897	0.00043682	NaN	33.922	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132500	+		13690	37526	9619	9637							0.026682265006456873
EPPLRAAAPPD	11	Unmodified	_EPPLRAAAPPD_					0	0	0			REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	567.301113	1132.58767	-0.15448	-8.7638E-05	0.071195	4.0389E-05	-0.083288	-4.7249E-05	567.3010587707405	54.185	0.48485	54.283	54.006	54.491	0.098015	-0.043496	-0.00033316	NaN	33.922	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1043500	+		13691	37526	9619	9637							0.026682265006456873
EPPLSAPQF	9	Unmodified	_EPPLSAPQF_					0	0	0			REV__nc|ENSG00000145113|Q99102-17|MUC4	REV__nc|ENSG00000145113|Q99102-17|MUC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.77215576171875	2	493.2531	984.491647	-0.41352	-0.00020397	0.99611	0.00049134	0.5826	0.00028737	493.25353995724294	21.192	0.63372	21.102	20.72	21.354	-0.090092					24	12	3	0	0	0	0.0242	1	593	593		69.628	21.97	1	33510	+		13692	36751	9620	9638	15022	15022					-0.001219213394392682
EPPLSKRNPP	10	Unmodified	_EPPLSKRNPP_					0	0	0		ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.2899780273438	2	567.81693	1133.61931	0.27668	0.00015711	-1.3913	-0.00079	-1.1146	-0.0006329	567.8160153358579	59.155	1.5087	59.155	58.304	59.813	0					59	37	4	0	0	0	0.03519	1	6761	6761		32.812	0	1	431320			13693	5369	9621	9639	15023	15023					0.05784219254610434
EPPPALALLL	10	Unmodified	_EPPPALALLL_					0	0	0			REV__ENSG00000126246|ENST00000246532|IGFLR1	REV__ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7996215820312	2	517.318243	1032.62193	-0.063854	-3.3033E-05	0.93447	0.00048342	0.87061	0.00045038	517.3187577609616	105.03	0.31516	105.03	104.81	105.13	0.00096893					13	9	2	0	0	0	0.03519	1	13455	13455		24.203	0	1	69478	+		13694	22885	9622	9640	15024	15024					0.10692674659549084
EPPPALALLL	10	Unmodified	_EPPPALALLL_					0	0	0			REV__ENSG00000126246|ENST00000246532|IGFLR1	REV__ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7990112304688	2	517.318243	1032.62193	-0.36937	-0.00019108	0.51557	0.00026671	0.14621	7.5635E-05	517.3187170645965	105.14	0.38105	105.13	104.92	105.3	-0.0015945					18	12	2	0	0	0	0.03519	1	13416	13416		38.806	6.8513	1	98520	+		13695	22885	9622	9640	15025	15025					0.10692674659549084
EPPPAVLEAD	10	Unmodified	_EPPPAVLEAD_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2617797851562	2	519.261122	1036.50769	-0.74183	-0.0003852	1.6688	0.00086652	0.92693	0.00048132	519.2617906919367	56.082	1.5212	55.925	55.348	56.869	-0.15656					66	39	2	0	0	0	0.71272	3	6061	6050;6061;6074		66.429	9.8082	1	2027600			13696	1016	9623	9641	15026;15027;15028	15027					-0.00910259893203147
EPPPAVLEAD	10	Unmodified	_EPPPAVLEAD_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2620239257812	2	519.261122	1036.50769	0.35739	0.00018558	0.61015	0.00031683	0.96753	0.0005024	519.2612762570359	56.2	1.1735	55.984	55.668	56.841	-0.21607					67	30	3	0	0	0	0.77808	1	6082	6082		62.107	7.3311	1	2147800			13697	1016	9623	9641	15029	15029					-0.00910259893203147
EPPPAVLEAD	10	Unmodified	_EPPPAVLEAD_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.261122	1036.50769	-0.30356	-0.00015763	1.6578	0.00086085	1.3543	0.00070323	519.2620191187143	55.875	1.1389	55.875	55.573	56.712	0	-0.050298	0.00027048	NaN	66.429	55	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1580000			13698	1016	9623	9641							-0.00910259893203147
EPPPAVLEAD	10	Unmodified	_EPPPAVLEAD_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.261122	1036.50769	-0.39389	-0.00020453	1.434	0.0007446	1.0401	0.00054007	519.2618036663506	56.025	1.0256	55.869	55.517	56.543	-0.15601	-0.055621	3.7968E-05	NaN	66.429	53	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1575100			13699	1016	9623	9641							-0.00910259893203147
EPPPAVLEAD	10	Unmodified	_EPPPAVLEAD_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.261122	1036.50769	-1.1228	-0.00058301	2.1459	0.0011143	1.0232	0.00053129	519.2621872608437	55.765	0.95004	55.863	55.523	56.473	0.098015	-0.062092	0.00077737	NaN	66.429	47	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1534400			13700	1016	9623	9641							-0.00910259893203147
EPPPLENEV	9	Unmodified	_EPPPLENEV_					0	0	0			REV__ENSG00000142166|ENST00000270139|IFNAR1	REV__ENSG00000142166|ENST00000270139|IFNAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2536010742188	2	512.253297	1022.49204	-0.12497	-6.4016E-05	-0.58698	-0.00030068	-0.71195	-0.0003647	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.67687	1	5841	5841		47.657	1.7054	1	54943000	+		13701	24136	9624	9642	15030	15030					-0.018305464102354563
EPPPPEPQV	9	Unmodified	_EPPPPEPQV_					0	0	0			REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.78118896484375	2	495.250557	988.486562	-0.19058	-9.4384E-05	-4.3389	-0.0021489	-4.5295	-0.0022432	495.2482879977371	28.241	0.58187	28.322	27.992	28.574	0.080812					29	13	3	0	0	0	0.024319	1	1535	1535		56.721	3.3696	1	878050	+		13702	25307	9625	9643	15031	15031					-0.00814225202043417
EPPPPEPQV	9	Unmodified	_EPPPPEPQV_					0	0	0			REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.250557	988.486562	-0.65938	-0.00032656	-4.2086	-0.0020843	-4.8679	-0.0024108	495.24839691370386	28.671	0.4985	28.671	28.449	28.947	0	0.12588	8.29E-05	NaN	56.721	34	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779900	+		13703	25307	9625	9643							-0.00814225202043417
EPPPPEPQV	9	Unmodified	_EPPPPEPQV_					0	0	0			REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.250557	988.486562	-0.5024	-0.00024881	-4.3223	-0.0021406	-4.8247	-0.0023894	495.2483914896545	28.647	0.45923	28.642	28.416	28.875	-0.0042019	0.097441	-2.9765E-05	NaN	56.721	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720370	+		13704	25307	9625	9643							-0.00814225202043417
EPPPPIVEF	9	Unmodified	_EPPPPIVEF_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.253662109375	2	512.771126	1023.5277	-0.09681	-4.9641E-05	-1.6743	-0.00085855	-1.7711	-0.00090819	512.7708482691492	54.563	0.143	54.318	54.265	54.408	-0.2453					5	3	2	0	0	0	0.024405	1	5799	5799		35.618	3.6634	1	148800	+		13705	28008	9626	9644	15032	15032					0.016875358374363714
EPPPPPAYR	9	Unmodified	_EPPPPPAYR_					0	0	0		ENSG00000087077|ENST00000200457|TRIP6;ENST00000476870.5_1_7:100465042-100470283:+|nuORF	ENSG00000087077|ENST00000200457|TRIP6	ENSG00000087077|ENST00000200457|TRIP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2536010742188	2	512.266542	1022.51853	-0.16321	-8.3608E-05	-0.17097	-8.7584E-05	-0.33419	-0.00017119	512.7671425104378	54.84	0.18108	54.609	54.53	54.711	-0.23087					5	3	2	0	0	0	0.024292	1	5841	5841		58.782	22.335	1	209460			13706	1832	9627	9645	15033	15033					0.008171872717412043
EPPPRKETE	9	Unmodified	_EPPPRKETE_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.245849609375	2	541.77747	1081.54039	-0.60741	-0.00032908	-3.0065	-0.0016288	-3.6139	-0.0019579	541.7755306745132	89.393	0.79436	89.393	89.102	89.896	0					34	18	3	0	0	0	0.024541	1	11327	11327		23.523	0	1	233370		+	13707	543	9628	9646	15034	15034					0.0028794722968541464
EPPPSLSRA	9	Unmodified	_EPPPSLSRA_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77203369140625	2	477.256174	952.497795	-0.1465	-6.9919E-05	1.447	0.0006906	1.3005	0.00062069	477.2563302924219	35.913	0.52194	35.913	35.608	36.129	0					24	13	3	0	0	0	0.023239	1	2839	2839		54.776	12.38	1	448860	+		13708	21364	9629	9647	15035	15035					0.019645968920940504
EPPPSLSRA	9	Unmodified	_EPPPSLSRA_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7724609375	2	477.256174	952.497795	-0.30089	-0.0001436	1.2548	0.00059888	0.95395	0.00045528	477.25636806128125	35.758	0.608	35.802	35.497	36.105	0.04406					28	15	3	0	0	0	0.024021	1	2766	2766		58.782	19.976	1	483710	+		13709	21364	9629	9647	15036	15036					0.019645968920940504
EPPPSPPKTT	10	Unmodified	_EPPPSPPKTT_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814|SMTN;ENST00000460658.5_1_22:31484094-31491444:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.292724609375	2	525.776939	1049.53933	-0.23379	-0.00012292	1.8734	0.000985	1.6396	0.00086208	525.7774031676195	81.118	0.37514	80.976	80.817	81.192	-0.14249					10	8	2	0	0	0	0.03519	1	9754	9754		54.722	32.762	1	101840			13710	9296	9630	9648	15037	15037					0.016537328607682866
EPPPTAPTL	9	Unmodified	_EPPPTAPTL_					0	0	0		ENSG00000114739|ENST00000352511|ACVR2B;ENST00000465020.5_1_3:38495813-38519975:+|nuORF	ENSG00000114739|ENST00000352511|ACVR2B	ENSG00000114739|ENST00000352511|ACVR2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2635498046875	2	461.74765	921.480748	0.41629	0.00019222	-0.14317	-6.6107E-05	0.27312	0.00012611	461.7474982620717	69.218	0.49289	68.925	68.673	69.166	-0.29291					21	12	2	0	0	0	0.024506	1	8264	8264		10.866	0	1	208490			13711	3379	9631	9649	15038	15038					0.01686676286283273
EPPQRFSH	8	Unmodified	_EPPQRFSH_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.8090515136719	2	499.246141	996.477728	-0.93394	-0.00046627	-1.0593	-0.00052883	-1.9932	-0.0009951	499.2456946943872	37.928	0.47726	37.706	37.388	37.866	-0.22149					14	12	2	0	0	0	0.027866	1	3102	3102		29.15	0	1	138360	+		13712	26015	9632	9650	15039	15039					-0.02065154047852502
EPPRGAHHT	9	Unmodified	_EPPRGAHHT_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2498474121094	2	501.249215	1000.48388	-0.89121	-0.00044672	-0.22162	-0.00011109	-1.1128	-0.0005578	501.24901476838613	105.51	0.90276	105.38	104.97	105.88	-0.13099					58	32	2	0	0	0	0.67687	1	13123	13123		47.657	5.2612	1	802850	+		13713	37226	9633	9651	15040	15040					-0.016346358163332297
EPPSEENEEE	10	Unmodified	_EPPSEENEEE_					0	0	0		ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.2590942382812	2	594.73058	1187.44661	-0.11801	-7.0185E-05	1.4316	0.00085142	1.3136	0.00078124	594.7311892493275	77.013	0.29712	76.745	76.509	76.807	-0.26806					11	6	2	0	0	0	0.03519	1	9113	9113		23.523	17.21	1	122290			13714	3180	9634	9652	15041	15041					-0.13961861453913116
EPPVEMITP	9	Unmodified	_EPPVEMITP_					0	0	0		PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7802429199219	2	506.754618	1011.49468	-0.58709	-0.00029751	4.35	0.0022044	3.7629	0.0019069	506.7567203179297	38.408	0.61187	38.189	37.957	38.569	-0.21849					34	16	3	0	0	0	0.024506	1	3192	3192		16.473	0	1	771120			13715	5302	9635	9653	15042	15042					-0.01060414276935262
EPPVIQPQP	9	Unmodified	_EPPVIQPQP_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2477111816406	2	502.7742	1003.53385	-0.022268	-1.1196E-05	-0.33605	-0.00016896	-0.35832	-0.00018015	502.77405569665825	61.54	0.57717	61.54	61.255	61.832	0					33	14	3	0	0	0	0.024209	1	7084	7084		66.429	24.033	1	639810			13716	5635	9636	9654	15043	15043					0.032220540689422705
EPPVIQPQP	9	Unmodified	_EPPVIQPQP_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.7742	1003.53385	0.29913	0.00015039	-0.82334	-0.00041395	-0.52421	-0.00026356	502.77370947013935	61.763	0.50517	61.536	61.261	61.766	-0.22663	-0.0019931	-0.0002199	NaN	54.776	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	602210			13717	5635	9636	9654							0.032220540689422705
EPPVPGPSL	9	Unmodified	_EPPVPGPSL_					0	0	0		ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.7423095703125	2	446.742368	891.470183	0.20475	9.1469E-05	-0.073946	-3.3035E-05	0.1308	5.8434E-05	446.7422026263838	81.83	1.1873	81.699	81.258	82.445	-0.13075					62	28	3	0	0	0	0.17455	1	10163	10163		94.006	6.2521	1	1846200			13718	11601	9637	9655	15044	15044					0.020106936318711632
EPPVPGPSL	9	Unmodified	_EPPVPGPSL_					0	0	0		ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	ENST00000265801.6_2_8:20104052-20104400:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	446.742368	891.470183	-0.50502	-0.00022562	0.67337	0.00030082	0.16834	7.5206E-05	446.74255697874145	81.692	1.2276	81.718	81.088	82.315	0.025711	0.016632	0.00029226	NaN	94.006	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2219400			13719	11601	9637	9655							0.020106936318711632
EPQAFAPAND	10	Unmodified	_EPQAFAPAND_					0	0	0			REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2;REV__PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;REV__nc|ENSG00000204970|Q9Y5I3-2|PCDHA1;REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.24365234375	2	530.240721	1058.46689	-0.19805	-0.00010502	0.68637	0.00036394	0.48832	0.00025893	530.2408548290116	110.65	0.59898	110.64	110.58	111.18	-0.011299					45	22	3	0	0	0	1.1314	1	13982	13982		27.047	1.4733	1	44720	+		13720	28649;37085;28648;28650;29034	9638	9656	15045	15045					-0.06000601212804213
EPQAGPSAR	9	Unmodified	_EPQAGPSAR_					0	0	0		ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2584533691406	2	456.730323	911.446094	0.16783	7.6652E-05	4.0494	0.0018495	4.2172	0.0019261	456.7321108463553	61.524	0.71492	61.595	61.276	61.991	0.071125					27	18	2	0	0	0	0.024389	1	7018	7018		51.193	10.415	1	138300			13721	6766	9639	9657	15046	15046					-0.013171468018072119
EPQDEFKEL	9	Unmodified	_EPQDEFKEL_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3132934570312	2	567.769311	1133.52407	0.12222	6.9392E-05	0.61993	0.00035198	0.74215	0.00042137	567.7695417194368	61.806	0.82679	61.58	61.082	61.909	-0.22663					29	21	2	0	0	0	0.020811	1	7082	7082		109.44	21.742	1	265270	+		13722	28151	9640	9658	15047	15047					-0.03735178727083621
EPQEDTRLWA	10	Unmodified	_EPQEDTRLWA_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.221435546875	3	415.535048	1243.58332	2.2766	0.00094602	-2.0132	-0.00083656	0.2634	0.00010945	415.53468434212976	24.295	0.47788	24.115	23.983	24.461	-0.18089					14	10	2	0	0	0	0.03519	1	1025	1025		18.531	0	1	40402			13723	2394	9641	9659	15048	15048					-0.028732827129033467
EPQGEGKHQ	9	Unmodified	_EPQGEGKHQ_					0	0	0			REV__ENSG00000275004|ENST00000626650|ZNF280B	REV__ENSG00000275004|ENST00000626650|ZNF280B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.78497314453125	2	505.238513	1008.46247	0.44237	0.0002235	-1.0568	-0.00053394	-0.61444	-0.00031044	505.2378274904992	63.477	0.97178	63.477	63.196	64.168	0					67	26	5	0	0	0	0.024319	1	7478	7478		47.657	8.8512	1	3971100	+		13724	29186	9642	9660	15049	15049					-0.04142065635699055
EPQIKDRL	8	Unmodified	_EPQIKDRL_					0	0	0			REV__ELMO2|p.E531D|1|0.2|ENSG00000062598|chr20:46371679-46371679|C/G|missense_variant	REV__ELMO2|p.E531D|1|0.2|ENSG00000062598|chr20:46371679-46371679|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.9019470214844	2	499.785099	997.555644	-0.60815	-0.00030394	-0.54675	-0.00027326	-1.1549	-0.0005772	499.7846756400474	43.837	0.66726	43.733	43.363	44.03	-0.10468					37	17	3	0	0	0	0.027866	1	4060	4060		55.504	13.03	1	1506400	+		13725	19746	9643	9661	15050	15050					0.056768588175032164
EPQLHSPMY	9	Unmodified	_EPQLHSPMY_					0	0	0		ENSG00000112462|ENST00000396806|OR12D3	ENSG00000112462|ENST00000396806|OR12D3	ENSG00000112462|ENST00000396806|OR12D3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.8180541992188	2	551.255317	1100.49608	-0.40166	-0.00022142	3.6886	0.0020334	3.2869	0.0018119	551.2574005562508	52.659	0.31276	52.401	52.21	52.523	-0.25838					13	7	2	0	0	0	0.024457	1	5467	5467		29.15	0	1	158780			13726	3213	9644	9662	15051	15051					-0.05014780188162149
EPQLRCGPV	9	Unmodified	_EPQLRCGPV_					0	0	0		ENST00000444069.5_1_3:48336129-48342785:-|nuORF;nc|ENSG00000172113|O75414-2|NME6;ENSG00000172113|ENST00000442597|NME6	ENST00000444069.5_1_3:48336129-48342785:-|nuORF	ENST00000444069.5_1_3:48336129-48342785:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8027648925781	2	499.758027	997.5015	-0.84479	-0.00042219	0.81567	0.00040764	-0.029116	-1.4551E-05	499.75830377487546	36.325	0.51929	36.325	35.886	36.406	0					36	14	3	0	0	0	0.024323	1	2817	2817		35.618	10.168	1	1250500			13727	8241	9645	9663	15052	15052					0.0026494339430200853
EPQLRCGPV	9	Unmodified	_EPQLRCGPV_					0	0	0		ENST00000444069.5_1_3:48336129-48342785:-|nuORF;nc|ENSG00000172113|O75414-2|NME6;ENSG00000172113|ENST00000442597|NME6	ENST00000444069.5_1_3:48336129-48342785:-|nuORF	ENST00000444069.5_1_3:48336129-48342785:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.758027	997.5015	0.16798	8.3949E-05	5.7349	0.002866	5.9028	0.00295	499.7614932706047	36.44	0.1207	36.224	36.165	36.286	-0.21661	-0.064703	0.0048657	NaN	25.574	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26028			13728	8241	9645	9663							0.0026494339430200853
EPQMSPSVAA	10	Unmodified	_EPQMSPSVAA_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7665100097656	2	508.739499	1015.46445	-0.40056	-0.00020378	-2.4093	-0.0012257	-2.8099	-0.0014295	508.73893956595805	22.747	0.14052	22.672	22.554	22.694	-0.075296					4	2	2	0	0	0	0.03519	1	811	811		39.253	14.734	1	21272			13729	5422	9646	9664	15053	15053					-0.04266772942116859
EPQPLLGH	8	Unmodified	_EPQPLLGH_					0	0	0			REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.23223876953125	2	445.74016	889.465767	-0.33495	-0.0001493	0.30247	0.00013482	-0.032481	-1.4478E-05	445.7398540739834	37.551	0.52701	37.488	37.198	37.725	-0.063389					31	14	3	0	0	0	0.027866	1	3097	3097		19.36	0	1	223690	+		13730	36900	9647	9665	15054	15054					0.01661229208957593
EPQPLLGH	8	Unmodified	_EPQPLLGH_					0	0	0			REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	445.74016	889.465767	-0.39929	-0.00017798	0.2742	0.00012222	-0.12509	-5.5758E-05	445.73985576190904	37.638	0.42411	37.638	37.379	37.803	0	0.048399	-0.00012158	NaN	12.959	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266550	+		13731	36900	9647	9665							0.01661229208957593
EPQQAPAAEP	10	Unmodified	_EPQQAPAAEP_					0	0	0		ENST00000592685.5_1_19:10572289-10572593:+|nuORF	ENST00000592685.5_1_19:10572289-10572593:+|nuORF	ENST00000592685.5_1_19:10572289-10572593:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.822509765625	2	519.248546	1036.48254	-1.0224	-0.00053089	1.4474	0.00075157	0.425	0.00022068	519.7521550119266	81.361	0.24469	81.385	81.207	81.452	0.023911					8	5	3	0	0	0	0.03519	1	10036	10036		72.879	1.5013	1	45983			13732	17379	9648	9666	15055	15055					-0.03424314695780595
EPQRGRCRFDG	11	Unmodified	_EPQRGRCRFDG_					0	0	0		ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2616882324219	3	440.879044	1319.6153	2.6447	0.001166	0.0011007	4.8529E-07	2.6458	0.0011665	440.8787984725239	19.519	0.39376	19.586	19.389	19.783	0.066195					12	7	2	0	0	0	0.024757	1	401	401		38.714	8.1452	1	15329			13733	12425	9649	9667	15056	15056					-0.03172193510749821
EPQRGRCRFDG	11	Unmodified	_EPQRGRCRFDG_					0	0	0		ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	ENST00000337537.7_1_14:64009712-64009985:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	440.879044	1319.6153	1.1679	0.00051488	1.3305	0.00058657	2.4983	0.0011015	440.87946914996235	19.243	0.44367	19.243	18.922	19.366	0	-0.17126	0.00092737	NaN	36.528	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14105			13734	12425	9649	9667							-0.03172193510749821
EPQTALHGM	9	Unmodified	_EPQTALHGM_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7968444824219	2	492.234384	982.454216	0.81765	0.00040248	-1.4128	-0.00069542	-0.59512	-0.00029294	492.2338016816796	97.27	0.97682	97.27	96.66	97.637	-3.8147E-05					35	21	2	0	0	0	0.024436	1	12367	12367		16.473	0	1	181380			13735	5761	9650	9668	15057	15057					-0.03771335876683679
EPQTRLSH	8	Unmodified	_EPQTRLSH_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.792236328125	2	484.251423	966.488293	0.29591	0.00014329	-4.3943	-0.0021279	-4.0983	-0.0019846	484.2492784064765	71.111	0.61874	70.839	70.528	71.147	-0.27185					21	13	2	0	0	0	0.027866	1	8262	8262		32.812	0.85756	1	378880	+		13736	19076	9651	9669	15058	15058					0.003708286065602806
EPQVSKDVD	9	Unmodified	_EPQVSKDVD_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-4|NEK1	REV__nc|ENSG00000137601|Q96PY6-4|NEK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7680969238281	2	508.748379	1015.4822	-0.10231	-5.2049E-05	-2.0358	-0.0010357	-2.1381	-0.0010878	508.74719479168317	59.519	1.6226	59.605	58.849	60.472	0.085686					64	43	3	0	0	0	0.024319	1	6650	6650		47.657	30.94	1	629430	+		13737	23770	9652	9670	15059	15059					-0.0249173441561652
EPQVSVNKPGG	11	Unmodified	_EPQVSVNKPGG_					0	0	0			REV__ENSG00000142687|ENST00000325722|KIAA0319L	REV__ENSG00000142687|ENST00000325722|KIAA0319L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.289794921875	2	556.290745	1110.56694	-0.28254	-0.00015718	-1.4305	-0.00079578	-1.7131	-0.00095296	556.2888474042767	67.657	2.7348	67.369	66.581	69.316	-0.28834					168	69	4	0	0	0	0.61592	1	8072	8072		68.846	3.3808	1	3080900	+		13738	24178	9653	9671	15060	15060					0.01607636120979805
EPRCPRMVL	9	Unmodified	_EPRCPRMVL_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.798828125	2	550.788804	1099.56305	-1.2708	-0.00069993	-0.20982	-0.00011557	-1.4806	-0.0008155	551.2898230026655	21.843	0.58084	21.915	21.637	22.218	0.071487					26	11	3	0	0	0	0.024354	1	668	668		47.916	5.5195	1	116660			13739	3043	9654	9672	15061	15061					0.01725551821937188
EPRCQPPD	8	Carbamidomethyl (C)	_EPRC(Carbamidomethyl (C))QPPD_	EPRC(1)QPPD		EPRC(93)QPPD		0	1	0		ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA;ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF;ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.77288818359375	2	499.721641	997.428729	-1.138	-0.00056868	4.3477	0.0021726	3.2097	0.001604	499.72364655616207	24.29	0.84538	24.243	23.957	24.802	-0.047148					34	18	2	0	0	0	0.027866	1	1091	1091		93.195	34.414	1	290560			13740	2476;16888	9655	9673	15062	15062	34				-0.07008810399122467
EPRERKRG	8	Unmodified	_EPRERKRG_					0	0	0		ENST00000568394.1_1_16:1031432-1031561:-|nuORF	REV__ENSG00000179051|ENST00000375436|RCC2	REV__ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.281982421875	2	514.291414	1026.56827	-0.087102	-4.4796E-05	1.1249	0.00057851	1.0378	0.00053371	514.7914976507682	66.032	0.15407	65.759	65.681	65.835	-0.27282					5	3	2	0	0	0	0.027866	1	7825	7825		21.96	0	1	62081			13741	27230	9656	9674	15063	15063					0.0560531500043453
EPRGLGKPR	9	Unmodified	_EPRGLGKPR_					0	0	0		ENST00000451682.5_1_7:98988617-98988704:+|nuORF	ENST00000451682.5_1_7:98988617-98988704:+|nuORF	ENST00000451682.5_1_7:98988617-98988704:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8237609863281	2	505.298707	1008.58286	0.45204	0.00022842	1.1367	0.00057439	1.5888	0.0008028	505.29895116848957	43.079	0.21664	43.11	42.974	43.191	0.030823					12	5	3	0	0	0	0.024405	1	3950	3950		35.618	10.168	1	130820			13742	14525	9657	9675	15064	15064					0.0789138714856108
EPRGWRGSP	9	Unmodified	_EPRGWRGSP_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2468872070312	2	521.264865	1040.51518	-0.98266	-0.00051223	2.765	0.0014413	1.7823	0.00092904	521.2665736746787	83.404	0.5528	83.431	83.088	83.641	0.026558					18	12	2	0	0	0	0.024209	1	10362	10362		56.721	0	1	125300	+		13743	26047	9658	9676	15065	15065					-0.003460627822278184
EPRHTFVL	8	Unmodified	_EPRHTFVL_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7731018066406	2	499.774534	997.534515	-0.38724	-0.00019353	-3.1751	-0.0015868	-3.5624	-0.0017804	499.77256736682114	24.617	0.90732	24.617	24.341	25.248	0					36	20	4	0	0	0	0.845	1	1100	1100		55.504	0.72789	1	1010900	+		13744	27860	9659	9677	15066	15066					0.03564893508678324
EPRKCKDT	8	Unmodified	_EPRKCKDT_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.26165771484375	2	488.747659	975.480765	0.14898	7.2815E-05	1.2354	0.00060379	1.3844	0.00067661	488.74814507289454	76.486	0.91797	76.235	75.905	76.823	-0.25162					40	21	3	0	0	0	0.027866	1	9168	9168		17.365	0	1	439520	+		13745	26221	9660	9678	15067	15067					-0.007956469853752424
EPRKNRPPIA	10	Unmodified	_EPRKNRPPIA_					0	0	0		ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.K855Pfs*26|1|0.09|ENSG00000142687|chr1:35444254-35444255|-/CTTCTTTTCTCTGG|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L;ENST00000482929.6_1_1:35925981-35940435:-|nuORF	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3447265625	2	589.343646	1176.67274	-2.3876	-0.0014071	1.117	0.00065827	-1.2707	-0.00074887	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.1307	1	11406	11406		26.693	0	1	4758600			13746	5584	9661	9679	15068	15068					0.09147016757151505
EPRKNRPPIA	10	Unmodified	_EPRKNRPPIA_					0	0	0		ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.K855Pfs*26|1|0.09|ENSG00000142687|chr1:35444254-35444255|-/CTTCTTTTCTCTGG|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L;ENST00000482929.6_1_1:35925981-35940435:-|nuORF	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.343646	1176.67274	-0.57069	-0.00033633	-0.8775	-0.00051715	-1.4482	-0.00085348	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0665	1	11581	11581		37.159	2.0071	1	17343000			13747	5584	9661	9679	15069	15069					0.09147016757151505
EPRKQAGSLA	10	Unmodified	_EPRKQAGSLA_					0	0	0		ENST00000609590.1_1_6:167417751-167458021:+|nuORF;nc|ENSG00000272980|O95684-2|CEP43;ENSG00000213066|ENST00000366847|CEP43;ENST00000496181.1_1_6:167435938-167438429:+|nuORF;nc|ENSG00000272980|O95684-3|CEP43	ENST00000609590.1_1_6:167417751-167458021:+|nuORF	ENST00000609590.1_1_6:167417751-167458021:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7933959960938	2	528.793455	1055.57236	0.088186	4.6632E-05	0.23794	0.00012582	0.32612	0.00017245	528.7934506158327	37.167	0.65526	36.974	36.735	37.39	-0.193					41	16	4	0	0	0	0.58878	1	2972	2972		78.264	4.0988	1	2010800			13748	10489	9662	9680	15070	15070					0.04679359703482078
EPRLDSAG	8	Unmodified	_EPRLDSAG_					0	0	0		ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2584533691406	2	422.711599	843.408646	0.24159	0.00010212	0.12176	5.1468E-05	0.36335	0.00015359	422.7115713722264	41.533	0.72911	41.556	41.324	42.053	0.023003					39	20	3	0	0	0	0.027866	1	3746	3746		27.882	7.4004	1	289360			13749	4953	9663	9681	15071	15071					-0.019322380674339
EPRLDSAG	8	Unmodified	_EPRLDSAG_					0	0	0		ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	422.711599	843.408646	-0.030826	-1.303E-05	0.36225	0.00015313	0.33142	0.0001401	422.7115165836725	41.401	0.5693	41.401	41.153	41.722	0	-0.064767	0.00011975	NaN	20.947	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247230			13750	4953	9663	9681							-0.019322380674339
EPRLDSAG	8	Unmodified	_EPRLDSAG_					0	0	0		ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	ENSG00000135925|ENST00000258411|WNT10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.711599	843.408646	-0.16295	-6.888E-05	0.2254	9.5281E-05	0.062456	2.6401E-05	422.7116756783501	41.564	0.42522	41.441	41.224	41.65	-0.12317	-0.025309	4.0555E-06	NaN	20.947	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248130			13751	4953	9663	9681							-0.019322380674339
EPRLLEALQ	9	Unmodified	_EPRLLEALQ_					0	0	0		ENST00000557266.5_1_15:91500194-91504996:+|nuORF;ENSG00000166965|ENST00000394258|RCCD1;ENST00000555737.5_1_15:91500194-91503934:+|nuORF	ENST00000557266.5_1_15:91500194-91504996:+|nuORF	ENST00000557266.5_1_15:91500194-91504996:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7658081054688	2	534.806031	1067.59751	-0.69771	-0.00037314	2.7586	0.0014753	2.0609	0.0011022	534.8057921947833	49.105	1.0587	48.952	48.611	49.669	-0.15277					44	28	3	0	0	0	0.024367	1	5075	5075		62.107	17.991	1	213020			13752	7635	9664	9682	15072	15072					0.06641414506043475
EPRPPHGEL	9	Unmodified	_EPRPPHGEL_					0	0	0		ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000579128.1_1_18:657682-669175:+|nuORF	ENST00000579128.1_1_18:657682-669175:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.26708984375	2	516.267073	1030.51959	-0.93702	-0.00048375	0.20076	0.00010365	-0.73626	-0.0003801	516.2671589437393	31.404	2.1801	31.404	30.426	32.606	0					119	53	4	0	0	0	0.12602	5	2093	2070;2081;2093;2105;2117		104.75	16.502	1	6792100			13753	8676	9665	9683	15073;15074;15075;15076;15077	15075					0.005554016406676965
EPRPPHGEL	9	Unmodified	_EPRPPHGEL_					0	0	0		ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000579128.1_1_18:657682-669175:+|nuORF	ENST00000579128.1_1_18:657682-669175:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2670288085938	2	516.267073	1030.51959	-0.36468	-0.00018827	-0.26902	-0.00013889	-0.6337	-0.00032716	516.2669071432356	31.336	1.8481	31.348	30.334	32.182	0.011799					139	44	5	0	0	0	0.11092	3	2077	2053;2065;2077		108.09	34.113	1	6582100			13754	8676	9665	9683	15078;15079;15080	15080					0.005554016406676965
EPRPPHGEL	9	Unmodified	_EPRPPHGEL_					0	0	0		ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000579128.1_1_18:657682-669175:+|nuORF	ENST00000579128.1_1_18:657682-669175:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2669067382812	2	516.267073	1030.51959	-0.80704	-0.00041665	0.16358	8.4453E-05	-0.64345	-0.00033219	516.2671056406949	31.1	1.9277	31.169	30.04	31.967	0.068962					153	46	5	0	0	0	0.16468	2	1990	1978;1990		96.19	27.404	1	6164700			13755	8676	9665	9683	15081;15082	15082					0.005554016406676965
EPRQTTSNL	9	Unmodified	_EPRQTTSNL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2669067382812	2	523.26727	1044.51999	-0.77277	-0.00040437	-0.16182	-8.4674E-05	-0.93459	-0.00048904	523.2671530152483	26.724	0.80348	26.724	26.447	27.251	0					68	19	5	0	0	0	0.03666	4	1392	1380;1392;1404;1417		136.27	45.898	1	4540200			13756	3421	9666	9684	15083;15084;15085;15086	15084					-0.0004922343014186481
EPRQTTSNL	9	Unmodified	_EPRQTTSNL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2669677734375	2	523.26727	1044.51999	-0.63339	-0.00033143	-0.17693	-9.258E-05	-0.81032	-0.00042401	523.267135479827	26.696	0.86243	26.673	26.405	27.267	-0.023088					75	21	4	0	0	0	0.041068	3	1365	1365;1376;1389		132.76	39.562	1	4598700			13757	3421	9666	9684	15087;15088;15089	15087					-0.0004922343014186481
EPRQTTSNL	9	Unmodified	_EPRQTTSNL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2669677734375	2	523.26727	1044.51999	-0.36586	-0.00019144	-0.7062	-0.00036953	-1.0721	-0.00056097	523.2667824031049	26.338	0.71218	26.42	26.171	26.883	0.081293					47	16	4	0	0	0	0.056725	3	1291	1280;1291;1310		126.24	35.466	1	2215100			13758	3421	9666	9684	15090;15091;15092	15091					-0.0004922343014186481
EPRRHRLE	8	Unmodified	_EPRRHRLE_					0	0	0			REV__ENST00000261858.6_1_15:69452998-69502670:+|nuORF	REV__ENST00000261858.6_1_15:69452998-69502670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3273315429688	2	546.804688	1091.59482	-0.72397	-0.00039587	3.0953	0.0016925	2.3714	0.0012967	546.8061831017004	57.235	0.52879	57.235	57.003	57.532	0					30	13	3	0	0	0	0.027866	1	6458	6458		47.657	0	1	857610	+		13759	29640	9667	9685	15093	15093					0.0526900389174898
EPRRHRLE	8	Unmodified	_EPRRHRLE_					0	0	0			REV__ENST00000261858.6_1_15:69452998-69502670:+|nuORF	REV__ENST00000261858.6_1_15:69452998-69502670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3282470703125	2	546.804688	1091.59482	-0.14	-7.6554E-05	2.3148	0.0012657	2.1748	0.0011892	546.8058584163608	57.424	0.6406	57.249	56.931	57.571	-0.1749					37	16	3	0	0	0	0.027866	1	6440	6440		56.721	22.549	1	705430	+		13760	29640	9667	9685	15094	15094					0.0526900389174898
EPRRITSARKR	11	Unmodified	_EPRRITSARKR_					0	0	0		ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.27734375	3	457.276014	1368.80621	0.47095	0.00021535	0.23158	0.0001059	0.70253	0.00032125	457.27581365687485	103.34	0.66978	103.33	103.1	103.77	-0.0046005					39	15	3	0	0	0	1.044	1	13196	13196		26.75	5.9126	1	464180			13761	8762	9668	9686	15095	15095					0.1365625586281567
EPRRITSARKR	11	Unmodified	_EPRRITSARKR_					0	0	0		ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	457.276014	1368.80621	0.39399	0.00018016	0.31563	0.00014433	0.70962	0.00032449	457.27588496507224	103.38	0.6664	103.25	102.98	103.65	-0.12724	-0.053166	-0.00014234	NaN	26.75	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588880			13762	8762	9668	9686							0.1365625586281567
EPRRITSARKR	11	Unmodified	_EPRRITSARKR_					0	0	0		ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	457.276014	1368.80621	-0.27745	-0.00012687	0.87702	0.00040104	0.59957	0.00027417	457.276048875292	103.44	0.74582	103.31	103.05	103.79	-0.12783	0.0011373	0.00062778	NaN	26.75	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459500			13763	8762	9668	9686							0.1365625586281567
EPRRITSARKR	11	Unmodified	_EPRRITSARKR_					0	0	0		ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	ENSG00000177679|ENST00000611745|SRRM3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	457.276014	1368.80621	0.38479	0.00017596	0.11143	5.0952E-05	0.49622	0.00022691	457.6106345135796	103.54	0.55327	103.37	103.08	103.63	-0.17034	0.063638	-0.00042248	NaN	26.75	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367160			13764	8762	9668	9686							0.1365625586281567
EPRRTPDK	8	Unmodified	_EPRRTPDK_					0	0	0			REV__ENSG00000125266|ENST00000646441|EFNB2	REV__ENSG00000125266|ENST00000646441|EFNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.77288818359375	2	499.772522	997.530492	-1.2575	-0.00062845	1.6587	0.00082899	0.40126	0.00020054	499.7730360367391	24.661	1.1233	24.614	24.177	25.3	-0.047146					40	25	3	0	0	0	0.56592	1	1091	1091		79.451	13.022	1	965160	+		13765	22807	9669	9687	15096	15096					0.03162804014937137
EPRSGSRRL	9	Unmodified	_EPRSGSRRL_					0	0	0		nc|nan|Q9H7T3|C10orf95	nc|nan|Q9H7T3|C10orf95	nc|nan|Q9H7T3|C10orf95	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2977905273438	2	529.296696	1056.57884	-0.22091	-0.00011693	1.8172	0.00096185	1.5963	0.00084493	529.2974915684347	106.43	0.70708	106.43	106.04	106.75	-0.0013199					53	23	4	0	0	0	0.89441	1	13636	13636		32.812	3.6629	1	1408400			13766	18858	9670	9688	15097	15097					0.05281297654869377
EPRTKFML	8	Unmodified	_EPRTKFML_					0	0	0			REV__ENSG00000171105|ENST00000302850|INSR	REV__ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7614440917969	2	511.278595	1020.54264	-0.20076	-0.00010264	3.6325	0.0018572	3.4317	0.0017546	511.7825243558601	17.995	0.34815	17.789	17.564	17.912	-0.20669					9	6	2	0	0	0	0.027866	1	232	232		40.573	17.53	1	10445	+		13767	26543	9671	9689	15098	15098					0.033187044337751104
EPRVGLAV	8	Unmodified	_EPRVGLAV_					0	0	0		ENST00000369569.5_1_1:114447353-114447596:-|nuORF	ENST00000369569.5_1_1:114447353-114447596:-|nuORF	ENST00000369569.5_1_1:114447353-114447596:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.53009033203125	2	420.750527	839.486502	1.5463	0.00065062	4.2534	0.0017896	5.7998	0.0024403	420.75440456396063	23.087	0.60048	22.896	22.479	23.079	-0.19117					17	12	2	0	0	0	0.027866	1	868	868		30.504	11.144	1	25105			13768	12927	9672	9690	15099	15099					0.06033819588606093
EPRVQSNI	8	Unmodified	_EPRVQSNI_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.789794921875	2	471.753798	941.493044	0.11711	5.5245E-05	-1.8262	-0.0008615	-1.7091	-0.00080625	471.7529136535419	47.661	0.28154	47.661	47.497	47.779	0					14	8	2	0	0	0	0.027866	1	4816	4816		26.693	1.1189	1	176010	+		13769	28450	9673	9691	15100	15100					0.019957127493285043
EPRVVFIR	8	Unmodified	_EPRVVFIR_					0	0	0		DLG5|p.K1506R|1|0.31|ENSG00000151208|chr10:77809677-77809677|T/C|missense_variant	DLG5|p.K1506R|1|0.31|ENSG00000151208|chr10:77809677-77809677|T/C|missense_variant	DLG5|p.K1506R|1|0.31|ENSG00000151208|chr10:77809677-77809677|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7537536621094	2	508.306001	1014.59745	-0.59944	-0.0003047	-3.9213	-0.0019932	-4.5208	-0.0022979	508.30420275829135	28.482	1.6938	28.478	27.808	29.502	-0.0042019					50	41	2	0	0	0	0.027866	1	1779	1779		25.45	8.977	1	54853			13770	643	9674	9692	15101	15101					0.09073459296712372
EPRVYDSLTC	10	Unmodified	_EPRVYDSLTC_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	590.8665161132812	2	591.776613	1181.53867	-1.6568	-0.00098044	-0.73027	-0.00043216	-2.3871	-0.0014126	591.7760255533485	102.27	0.39951	102.27	102.13	102.53	0					19	8	3	0	0	0	0.03519	1	13116	13116		39.253	0	1	134400	+		13771	20221	9675	9693	15102	15102					-0.04483429850597531
EPRWVLNVKRA	11	Unmodified	_EPRWVLNVKRA_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7532043457031	3	456.601727	1366.78335	0.081686	3.7298E-05	-3.1769	-0.0014506	-3.0952	-0.0014133	456.6002328432596	22.408	0.5593	22.408	22.152	22.711	0					16	11	2	0	0	0	0.024727	1	817	817		17.833	6.8349	1	85838			13772	9763	9676	9694	15103	15103					0.11463236745362337
EPRWVLNVKRA	11	Unmodified	_EPRWVLNVKRA_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	456.601727	1366.78335	0.45256	0.00020664	-3.5174	-0.0016061	-3.0649	-0.0013994	456.6002760650897	22.586	0.41476	22.397	22.191	22.606	-0.18894	-0.033273	-0.00064029	NaN	17.833	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30638			13773	9763	9676	9694							0.11463236745362337
EPRWVLNVKRA	11	Unmodified	_EPRWVLNVKRA_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	456.601727	1366.78335	0.81303	0.00037123	-4.3168	-0.0019711	-3.5038	-0.0015998	456.5997649288381	22.723	0.37154	22.521	22.375	22.747	-0.20199	0.091045	-0.0017353	NaN	17.833	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38883			13774	9763	9676	9694							0.11463236745362337
EPRYQAVI	8	Unmodified	_EPRYQAVI_					0	0	0			REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF;REV__ENSG00000082458|ENST00000374360|DLG3	REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2681579589844	2	488.266542	974.51853	-0.80905	-0.00039503	4.0532	0.001979	3.2441	0.001584	488.26869525931835	43.619	1.4847	43.474	42.841	44.326	-0.14471					126	41	5	0	0	0	0.77775	1	4121	4121		60.972	4.2509	1	12505000	+		13775	20556;20695	9677	9695	15104	15104					0.030251872717599326
EPSATSTY	8	Unmodified	_EPSATSTY_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7424621582031	2	428.190165	854.365778	-0.74523	-0.0003191	-0.065074	-2.7864E-05	-0.8103	-0.00034696	428.1911332455493	90.062	1.1945	90.062	89.061	90.255	0					38	28	3	0	0	0	0.027866	1	11298	11298		35.201	10.998	1	153880			13776	7105	9678	9696	15105	15105					-0.06723052915515382
EPSDFTLF	8	Unmodified	_EPSDFTLF_					0	0	0			REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF	REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.79425048828125	2	478.224008	954.433463	-0.2848	-0.0001362	-2.9783	-0.0014243	-3.2631	-0.0015605	478.2225371383315	45.411	1.1933	45.262	44.697	45.89	-0.1488					49	34	2	0	0	0	0.027866	1	4467	4467		38.806	0	1	269920	+		13777	24237	9679	9697	15106	15106					-0.045576029846984056
EPSGQDELAL	10	Unmodified	_EPSGQDELAL_					0	0	0		ENSG00000173327|ENST00000309100|MAP3K11;ENST00000527304.1_1_11:65380411-65381302:-|nuORF;ENST00000524856.1_1_11:65375623-65381302:-|nuORF;MAP3K11|p.E349Sfs*70|1|0.23|ENSG00000173327|chr11:65607947-65607947|G/-|frameshift_variant	ENSG00000173327|ENST00000309100|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2825317382812	2	529.753661	1057.49277	-0.97315	-0.00051553	-1.7089	-0.00090527	-2.682	-0.0014208	529.7526394200404	55.888	0.59002	55.731	55.462	56.052	-0.15656					36	15	3	0	0	0	0.03519	1	6060	6060		31.634	0	1	761670			13778	8366	9680	9698	15107	15107					-0.03367751761197724
EPSGRVLG	8	Unmodified	_EPSGRVLG_					0	0	0		ENST00000461102.1_1_9:131094341-131094578:+|nuORF	ENST00000461102.1_1_9:131094341-131094578:+|nuORF	ENST00000461102.1_1_9:131094341-131094578:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.15838623046875	2	407.72451	813.434466	-0.52565	-0.00021432	1.051	0.00042853	0.52537	0.00021421	407.72511397594553	34.899	0.58128	34.713	34.519	35.1	-0.18675					20	14	2	0	0	0	0.027866	1	2587	2587		33.516	26.78	1	107570			13779	14674	9681	9699	15108	15108					0.02028656174866228
EPSKPSLKL	9	Unmodified	_EPSKPSLKL_					0	0	0			REV__ENSG00000204021|ENST00000404190|LIPK	REV__ENSG00000204021|ENST00000404190|LIPK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7870178222656	2	499.797675	997.580796	0.28617	0.00014302	0.55097	0.00027537	0.83714	0.0004184	499.79646182938825	54.511	0.42357	54.609	54.525	54.949	0.098015					21	11	3	0	0	0	0.024292	1	5928	5928		49.442	0	1	240360	+		13780	28561	9682	9700	15109	15109					0.08190913620080664
EPSKQRTSH	9	Unmodified	_EPSKQRTSH_					0	0	0			REV__nc|ENSG00000029363|Q9NYF8-4|BCLAF1	REV__nc|ENSG00000029363|Q9NYF8-4|BCLAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.276123046875	2	535.272887	1068.53122	-0.90117	-0.00048237	-2.1492	-0.0011504	-3.0503	-0.0016328	535.2712878020562	52.59	1.0442	52.328	51.913	52.957	-0.26233					60	26	4	0	0	0	0.024511	1	5425	5425		25.574	11.437	1	491810	+		13781	20037	9683	9701	15110	15110					-0.0003040133599370165
EPSLEEGFI	9	Unmodified	_EPSLEEGFI_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.80535888671875	2	510.747847	1019.48114	-0.64708	-0.00033049	0.64574	0.00032981	-0.0013375	-6.8314E-07	510.7480783208466	23.583	0.3729	23.583	23.321	23.694	0					11	8	2	0	0	0	0.024523	1	945	945		37.159	5.6293	1	26551			13782	6567	9684	9702	15111	15111					-0.02781948784524957
EPSLEPVLP	9	Unmodified	_EPSLEPVLP_					0	0	0		ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.77685546875	2	490.768583	979.522613	-0.89355	-0.00043852	-2.7801	-0.0013644	-3.6737	-0.0018029	490.767372485817	28.661	0.4985	28.661	28.449	28.947	0					24	11	3	0	0	0	0.024517	1	1685	1685		26.796	1.3459	1	138350			13783	17257	9685	9703	15112	15112					0.032032319747941074
EPSLHLLLV	9	Unmodified	_EPSLHLLLV_					0	0	0			REV__nc|ENSG00000110002|O00534-2|VWA5A	REV__nc|ENSG00000110002|O00534-2|VWA5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7691345214844	2	510.808042	1019.60153	-0.096911	-4.9503E-05	-4.3391	-0.0022164	-4.436	-0.0022659	510.8060679418288	86.089	1.3228	86.044	85.819	87.142	-0.045097					51	30	2	0	0	0	0.024354	1	10799	10799		38.806	0	1	179800	+		13784	36562	9686	9704	15113	15113					0.09251503999780653
EPSLLALLI	9	Unmodified	_EPSLLALLI_					0	0	0			REV__UPK2|p.G23E|1|0.43|ENSG00000110375|chr11:118956418-118956418|G/A|missense_variant	REV__UPK2|p.G23E|1|0.43|ENSG00000110375|chr11:118956418-118956418|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.7582702636719	2	484.804968	967.595384	0.19968	9.6806E-05	-1.1033	-0.00053487	-0.90359	-0.00043806	484.80454311068485	99.066	0.40242	98.897	98.671	99.074	-0.16862					12	8	2	0	0	0	0.024487	1	12241	12241		11.511	0	1	41553	+		13785	37761	9687	9705	15114	15114					0.11028985768246002
EPSLRIKV	8	Unmodified	_EPSLRIKV_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.74822998046875	2	471.292559	940.570566	0.36411	0.0001716	-0.54399	-0.00025638	-0.17989	-8.478E-05	471.29215758556694	49.98	0.56433	49.874	49.562	50.127	-0.10558					22	14	2	0	0	0	0.027866	1	5018	5018		18.324	0	1	224040	+		13786	22722	9688	9706	15115	15115					0.09790350685523208
EPSLSVDTHDP	11	Unmodified	_EPSLSVDTHDP_					0	0	0			REV__nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	REV__nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.8114013671875	2	598.775125	1195.5357	-0.28903	-0.00017306	1.5242	0.00091268	1.2352	0.00073962	598.7760101210132	73.694	0.86192	73.503	72.886	73.748	-0.19027					43	21	4	0	0	0	0.024732	1	8653	8653		13.454	0.64233	1	535660	+		13787	36706	9689	9707	15116	15116					-0.05424981703777121
EPSNEKVF	8	Unmodified	_EPSNEKVF_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-4|MED23	REV__nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7980651855469	2	475.234907	948.455261	-0.20724	-9.8488E-05	-0.12967	-6.1623E-05	-0.33691	-0.00016011	475.23466771407976	33.09	0.33537	33.097	32.888	33.223	0.0066261					14	8	2	0	0	0	0.027866	1	2357	2357		30.504	1.3541	1	98918	+		13788	21987	9690	9708	15117	15117					-0.021027982361374598
EPSNEKVF	8	Unmodified	_EPSNEKVF_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-4|MED23	REV__nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.234907	948.455261	0.28292	0.00013445	0.098175	4.6656E-05	0.3811	0.00018111	475.23467502485397	33.215	0.45259	33.215	32.903	33.356	0	0.10813	0.0003519	NaN	30.504	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78313	+		13789	21987	9690	9708							-0.021027982361374598
EPSNEKVF	8	Unmodified	_EPSNEKVF_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-4|MED23	REV__nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.234907	948.455261	0.57212	0.00027189	-0.66999	-0.0003184	-0.097869	-4.6511E-05	475.2343759101188	32.945	0.41936	33.008	32.728	33.147	0.062885	-0.098382	-0.00037821	NaN	30.504	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64930	+		13790	21987	9690	9708							-0.021027982361374598
EPSPPVRDP	9	Unmodified	_EPSPPVRDP_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2655944824219	2	497.253631	992.49271	-0.49017	-0.00024374	1.3979	0.00069513	0.90777	0.00045139	497.25386038156546	37.684	0.67991	37.716	37.487	38.167	0.032269					31	18	2	0	0	0	0.024209	1	3004	3004		47.657	1.7054	1	419220			13791	1229	9691	9709	15118	15118					-0.003837069705241447
EPSPTSPAPLI	11	Unmodified	_EPSPTSPAPLI_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2;nc|ENSG00000182158|Q70SY1-2|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8316650390625	2	554.797872	1107.58119	-0.76246	-0.00042301	-0.074331	-4.1239E-05	-0.83679	-0.00046425	554.7977968507784	48.337	0.39852	48.239	48.039	48.438	-0.097553					15	10	2	0	0	0	0.024756	1	4823	4823		44.377	11.565	1	252650			13792	9105	9692	9710	15119	15119					0.031702885492677524
EPSRIRPSR	9	Unmodified	_EPSRIRPSR_					0	0	0		ENST00000524647.5_1_11:65632285-65632724:+|nuORF	ENST00000524647.5_1_11:65632285-65632724:+|nuORF	ENST00000524647.5_1_11:65632285-65632724:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3121948242188	2	549.312346	1096.61014	-0.61912	-0.00034009	0.47786	0.00026249	-0.14126	-7.7595E-05	549.312457972932	19.442	0.53863	19.323	19.101	19.64	-0.11872					33	10	4	0	0	0	0.32811	1	397	397		71.877	2.2498	1	409270			13793	16067	9693	9711	15120	15120					0.06569870688940682
EPSSAKDPSAV	11	Unmodified	_EPSSAKDPSAV_					0	0	0			REV__ENSG00000100395|ENST00000216237|L3MBTL2	REV__ENSG00000100395|ENST00000216237|L3MBTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.236083984375	2	544.266936	1086.51932	-0.46468	-0.00025291	3.9576	0.002154	3.4929	0.0019011	544.2691524127117	58.645	1.3014	58.458	57.964	59.265	-0.18795					79	31	5	0	0	0	0.024748	1	6474	6474		53.089	23.247	1	2446000	+		13794	21109	9694	9712	15121	15121					-0.020480628698578585
EPSSGIFASGV	11	Unmodified	_EPSSGIFASGV_					0	0	0			REV__nc|ENSG00000111405|P21128-3|ENDOU	REV__nc|ENSG00000111405|P21128-3|ENDOU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.286865234375	2	525.758746	1049.50294	0.18466	9.7087E-05	0.32353	0.0001701	0.50819	0.00026719	525.758385898207	74.545	0.26379	74.282	74.054	74.318	-0.26326					8	5	2	0	0	0	0.024747	1	8787	8787		39.253	22.78	1	95458	+		13795	21917	9695	9713	15122	15122					-0.01983144035943951
EPSSPAPPRH	10	Unmodified	_EPSSPAPPRH_					0	0	0			REV__nc|ENSG00000164830|Q8N573-2|OXR1	REV__nc|ENSG00000164830|Q8N573-2|OXR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.32861328125	2	537.76998	1073.52541	-0.8006	-0.00043054	-2.5092	-0.0013494	-3.3098	-0.0017799	537.7685130996588	82.059	0.69148	82.059	81.63	82.321	0					35	16	3	0	0	0	0.03519	1	10224	10224		54.776	17.617	1	433550	+		13796	36870	9696	9714	15123	15123					-0.00841499847660998
EPSVICELEG	10	Unmodified	_EPSVICELEG_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7822265625	2	538.25244	1074.49033	-0.23232	-0.00012505	3.653	0.0019662	3.4206	0.0018412	538.2543415045216	33.022	0.70111	33.078	32.76	33.461	0.056568					44	18	3	0	0	0	0.03519	1	2262	2262		58.782	7.5893	1	225330	+		13797	25017;36804	9697	9715	15124	15124					-0.04393923490488305
EPSVLLLTD	9	Unmodified	_EPSVLLLTD_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3072204589844	2	493.773865	985.533177	0.23641	0.00011673	-0.74596	-0.00036834	-0.50955	-0.0002516	493.77356852955575	100.93	0.41946	100.93	100.69	101.11	-0.0054474					13	9	2	0	0	0	0.024205	1	12839	12839		53.351	17.733	1	109610			13798	3841	9698	9716	15125	15125					0.039832146292383186
EPSVLLLTD	9	Unmodified	_EPSVLLLTD_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.773865	985.533177	0.16022	7.9114E-05	-0.2627	-0.00012971	-0.10247	-5.0599E-05	493.77369603948785	100.83	0.4024	100.69	100.59	100.99	-0.13364	-0.12001	8.9707E-05	NaN	53.351	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181380			13799	3841	9698	9716							0.039832146292383186
EPSVLLLTD	9	Unmodified	_EPSVLLLTD_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.773865	985.533177	0.14213	7.018E-05	-0.47639	-0.00023523	-0.33426	-0.00016505	493.7736742668283	100.91	0.45605	100.74	100.6	101.05	-0.17178	-0.076838	-0.00012133	NaN	53.351	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107710			13800	3841	9698	9716							0.039832146292383186
EPSWALILT	9	Unmodified	_EPSWALILT_					0	0	0			REV__nc|ENSG00000012061|P07992-4|ERCC1	REV__nc|ENSG00000012061|P07992-4|ERCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2786865234375	2	515.2844	1028.55425	-0.78526	-0.00040463	-4.3295	-0.0022309	-5.1147	-0.0026355	515.2822864964492	47.021	1.4451	47.08	45.837	47.282	0.059093					51	40	2	0	0	0	0.024323	1	4568	4568		44.117	22.157	1	803750	+		13801	19940	9699	9717	15126	15126					0.04111224728740126
EPSWALILT	9	Unmodified	_EPSWALILT_					0	0	0			REV__nc|ENSG00000012061|P07992-4|ERCC1	REV__nc|ENSG00000012061|P07992-4|ERCC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.2844	1028.55425	0.023513	1.2116E-05	-5.208	-0.0026836	-5.1845	-0.0026715	515.2818675807619	47.294	1.4182	47.141	45.918	47.336	-0.153	0.030705	-0.00041365	NaN	35.618	48	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	873780	+		13802	19940	9699	9717							0.04111224728740126
EPTAVEPL	8	Unmodified	_EPTAVEPL_					0	0	0			REV__nc|ENSG00000170345|P01100-3|FOS	REV__nc|ENSG00000170345|P01100-3|FOS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.7488708496094	2	428.226551	854.438549	-0.64819	-0.00027757	-2.2968	-0.00098356	-2.945	-0.0012611	428.2255376804418	25.744	1.2906	25.71	25.392	26.682	-0.034395					60	30	4	0	0	0	0.027866	1	1198	1198		19.36	0	1	1508300	+		13803	26458	9700	9718	15127	15127					0.005507008779090938
EPTDPYDQS	9	Unmodified	_EPTDPYDQS_					0	0	0			REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3153686523438	2	526.214369	1050.41418	-0.35241	-0.00018545	1.0888	0.00057296	0.73641	0.00038751	526.2146643111753	73.623	0.51218	73.346	73.092	73.605	-0.2769					24	12	3	0	0	0	0.024541	1	8678	8678		14.865	0	1	173480	+		13804	20644	9701	9719	15128	15128					-0.10900604066273445
EPTDPYDQS	9	Unmodified	_EPTDPYDQS_					0	0	0			REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.214369	1050.41418	-0.53803	-0.00028312	0.62172	0.00032716	0.083689	4.4038E-05	526.2147862568986	73.566	0.48958	73.295	73.009	73.499	-0.27126	-0.023574	-0.00017073	NaN	9.7057	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102190	+		13805	20644	9701	9719							-0.10900604066273445
EPTEVEDGTV	10	Unmodified	_EPTEVEDGTV_					0	0	0		nc|ENSG00000140987|Q9NX65-3|ZSCAN32;nc|ENSG00000140987|Q9NX65-2|ZSCAN32;ENSG00000140987|ENST00000396852|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2449951171875	2	538.243126	1074.4717	-0.59003	-0.00031758	2.6897	0.0014477	2.0996	0.0011301	538.2453152102514	55.755	1.2862	55.599	55.293	56.58	-0.15601					93	34	5	0	0	0	0.79525	1	6164	6164		60.972	2.19	1	11106000			13806	5458	9702	9720	15129	15129					-0.06255761860688835
EPTEVEDGTV	10	Unmodified	_EPTEVEDGTV_					0	0	0		nc|ENSG00000140987|Q9NX65-3|ZSCAN32;nc|ENSG00000140987|Q9NX65-2|ZSCAN32;ENSG00000140987|ENST00000396852|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2439575195312	2	538.243126	1074.4717	-1.1984	-0.00064505	2.0664	0.0011122	0.86792	0.00046715	538.2442843963282	55.781	0.58214	55.624	55.312	55.894	-0.15655					52	15	5	0	0	0	0.79525	1	6010	6010		60.972	0	1	10777000			13807	5458	9702	9720	15130	15130					-0.06255761860688835
EPTFCFIDL	9	Unmodified	_EPTFCFIDL_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|168|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|168|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|168|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.297119140625	2	542.754618	1083.49468	-0.55996	-0.00030392	4.2271	0.0022943	3.6672	0.0019904	542.7568563215566	73.055	0.42735	72.778	72.582	73.01	-0.2769					12	9	2	0	0	0	0.024477	1	8584	8584		20.947	10.081	1	120120			13808	17896	9703	9721	15131	15131					-0.0437241427691788
EPTFCGKSKA	10	Unmodified	_EPTFCGKSKA_					0	0	0			REV__DMRT3|p.S309Pfs*10|1|0.26|ENSG00000064218|chr9:990511-990511|T/-|frameshift_variant	REV__DMRT3|p.S309Pfs*10|1|0.26|ENSG00000064218|chr9:990511-990511|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.782958984375	2	534.263142	1066.51173	-0.13452	-7.187E-05	2.0952	0.0011194	1.9607	0.0010475	534.2625841082473	75.756	0.29057	75.768	75.61	75.901	0.011635					10	7	2	0	0	0	0.03519	1	9241	9241		31.53	0	1	74228	+		13809	19680	9704	9722	15132	15132					-0.018864936710997426
EPTFGLLN	8	Unmodified	_EPTFGLLN_					0	0	0			REV__ENSG00000157557|ENST00000360938|ETS2	REV__ENSG00000157557|ENST00000360938|ETS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.26898193359375	2	445.734543	889.454533	1.0606	0.00047273	2.8447	0.001268	3.9053	0.0017407	445.7356201280777	62.946	0.71025	63	62.845	63.555	0.054104					29	18	2	0	0	0	0.027866	1	7257	7257		12.207	0.69583	1	89201	+		13810	25136	9705	9723	15133	15133					0.005384071148114344
EPTGHARG	8	Unmodified	_EPTGHARG_					0	0	0		ENST00000291576.11_1_21:45550783-45550885:+|nuORF	ENST00000291576.11_1_21:45550783-45550885:+|nuORF	ENST00000291576.11_1_21:45550783-45550885:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.1948547363281	2	412.704109	823.393664	-0.29961	-0.00012365	0.28403	0.00011722	-0.015582	-6.4309E-06	412.7041859542959	23.454	1.2587	23.274	22.743	24.002	-0.17989					39	28	2	0	0	0	0.027866	1	898	898		16.473	9.7376	1	68954			13811	11798	9706	9724	15134	15134					-0.025096851447528934
EPTGQVRQP	9	Unmodified	_EPTGQVRQP_					0	0	0			REV__nc|ENSG00000100060|O00587-2|MFNG	REV__nc|ENSG00000100060|O00587-2|MFNG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8105163574219	2	506.26453	1010.51451	-0.66035	-0.00033431	3.7895	0.0019185	3.1292	0.0015842	506.2664524032323	64.441	0.81942	64.185	63.959	64.778	-0.25563					31	20	3	0	0	0	0.023837	1	7291	7291		37.812	0	1	307160	+		13812	21041	9707	9725	15135	15135					0.009670977780501744
EPTIDMDLAGN	11	Unmodified	_EPTIDMDLAGN_					0	0	0			REV__ENSG00000186190|ENST00000375494|BPIFB3	REV__ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.2902221679688	2	588.266078	1174.5176	-0.22319	-0.00013129	0.3727	0.00021925	0.14951	8.7953E-05	588.2662147279161	85.676	0.93886	85.539	85.241	86.18	-0.13753					37	21	3	0	0	0	0.024787	1	10342	10342		49.536	17.902	1	328220	+		13813	27833	9708	9726	15136	15136					-0.06267439950102016
EPTIVKVKSL	10	Unmodified	_EPTIVKVKSL_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42836260-42842000:+|nuORF;ENST00000414406.2_1_12:20095430-20095949:+|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.7925415039062	2	557.347532	1112.68051	-0.74767	-0.00041671	0.66227	0.00036912	-0.085399	-4.7597E-05	557.3477252620949	57.714	0.38951	57.481	57.274	57.664	-0.23363					24	9	3	0	0	0	0.03519	1	6318	6318		49.536	5.1589	1	296940			13814	3814	9709	9727	15137	15137					0.12867731234041457
EPTKPLVR	8	Unmodified	_EPTKPLVR_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2840881347656	2	470.284734	938.554916	-0.2298	-0.00010807	-0.065916	-3.0999E-05	-0.29572	-0.00013907	470.28434399632755	50.866	1.0294	50.953	50.615	51.644	0.087006					65	28	3	0	0	0	0.6248	1	5288	5288		73.975	13.003	1	2421200			13815	9091	9710	9728	15138	15138					0.08318064168486217
EPTKSLLKVY	10	Unmodified	_EPTKSLLKVY_					0	0	0			REV__ENST00000503126.1_1_5:179133324-179137021:+|nuORF;REV__nc|ENSG00000127022|P27824-3|CANX	REV__nc|ENSG00000127022|P27824-3|CANX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3428344726562	2	589.344989	1176.67542	-1.1197	-0.00065991	-2.1296	-0.001255	-3.2493	-0.001915	589.3435077588188	103.81	0.67852	103.68	103.38	104.06	-0.12927					45	16	4	0	0	0	1.1265	1	12931	12931		24.519	2.5593	1	466270	+		13816	33947;22915	9711	9729	15139	15139					0.09415427371459373
EPTLDCTLR	9	Unmodified	_EPTLDCTLR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3240356445312	2	524.260599	1046.50665	-0.015229	-7.984E-06	-3.1874	-0.001671	-3.2026	-0.001679	524.2588344178512	50.628	1.0465	50.516	49.966	51.012	-0.11163					60	27	3	0	0	0	0.024495	1	5077	5077		34.173	6.2903	1	1322600			13817	1604	9712	9730	15140	15140					-0.014747975337513708
EPTLDCTLR	9	Unmodified	_EPTLDCTLR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.260599	1046.50665	-0.85075	-0.00044602	1.1497	0.00060275	0.29896	0.00015673	524.261005981638	50.717	0.44404	50.717	50.512	50.956	0	0.086689	0.0044381	NaN	26.693	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373310			13818	1604	9712	9730							-0.014747975337513708
EPTLDCTLR	9	Unmodified	_EPTLDCTLR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.260599	1046.50665	-0.36022	-0.00018885	-0.426	-0.00022333	-0.78622	-0.00041219	524.2604422621538	50.91	0.40527	50.761	50.528	50.933	-0.14916	0.13092	0.0027859	NaN	26.693	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460710			13819	1604	9712	9730							-0.014747975337513708
EPTLDCTLR	9	Unmodified	_EPTLDCTLR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.260599	1046.50665	-0.23022	-0.00012069	2.0201	0.0010591	1.7899	0.00093839	524.2605914660295	50.548	0.6176	50.629	50.377	50.995	0.080994	-0.0011419	0.0053507	NaN	26.693	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436170			13820	1604	9712	9730							-0.014747975337513708
EPTLDCTLR	9	Unmodified	_EPTLDCTLR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.260599	1046.50665	0.42568	0.00022317	-3.6355	-0.001906	-3.2099	-0.0016828	524.258565393978	50.715	1.0063	50.535	49.978	50.984	-0.18071	-0.095514	-0.00057937	NaN	26.693	59	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1465600			13821	1604	9712	9730							-0.014747975337513708
EPTLDTLIP	9	Unmodified	_EPTLDTLIP_					0	0	0			REV__nc|ENSG00000163703|Q96HD1-2|CRELD1	REV__nc|ENSG00000163703|Q96HD1-2|CRELD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7716979980469	2	499.773865	997.533177	0.33363	0.00016674	-2.7267	-0.0013627	-2.3931	-0.001196	499.7721927740948	24.493	1.15	24.571	24.184	25.334	0.078344					39	25	3	0	0	0	0.55828	1	1016	1016		55.504	3.205	1	943300	+		13822	36855	9713	9731	15141	15141					0.03431214629256374
EPTLKKMVE	9	Unmodified	_EPTLKKMVE_					0	0	0			REV__nc|ENSG00000126012|P41229-2|KDM5C;REV__ENST00000465402.1_1_X:53230656-53239709:-|nuORF	REV__nc|ENSG00000126012|P41229-2|KDM5C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7964477539062	2	537.796817	1073.57908	-0.45908	-0.00024689	0.61389	0.00033015	0.15481	8.3254E-05	537.7970207667825	77.615	3.0284	77.615	76.799	79.828	0					167	72	3	0	0	0	0.32811	1	9622	9622		71.877	4.3838	1	2444300	+		13823	22876;33002	9714	9732	15142	15142					0.045235365398411886
EPTLLLSD	8	Unmodified	_EPTLLLSD_					0	0	0		ENSG00000215018|ENST00000399429|COL28A1;nc|ENSG00000215018|Q2UY09-2|COL28A1;nc|ENSG00000215018|Q2UY09-3|COL28A1	ENSG00000215018|ENST00000399429|COL28A1;nc|ENSG00000215018|Q2UY09-3|COL28A1	ENSG00000215018|ENST00000399429|COL28A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	2	444.239658	886.464763	-1.0935	-0.00048579	-1.605	-0.00071301	-2.6985	-0.0011988	444.2388153028279	29.327	0.8154	29.082	28.796	29.611	-0.24524					39	18	4	0	0	0	0.027866	1	1819	1819		17.365	0	1	401430			13824	10578;18719	9715	9733	15143	15143					0.01698970049392301
EPTLVPEL	8	Unmodified	_EPTLVPEL_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENST00000513811.5_1_4:15471657-15545375:+|nuORF	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2240295410156	2	449.250026	896.485499	-0.029413	-1.3214E-05	-2.6491	-0.0011901	-2.6785	-0.0012033	449.24864388846987	23.825	0.44562	23.901	23.69	24.136	0.076241					20	9	3	0	0	0	0.027866	1	937	937		42.474	1.9018	1	93729			13825	1114	9716	9734	15144	15144					0.033115604290514966
EPTPAPGLAF	10	Unmodified	_EPTPAPGLAF_					0	0	0			REV__ENSG00000248099|ENST00000317306|INSL3	REV__ENSG00000248099|ENST00000317306|INSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7731018066406	2	500.260925	998.507297	-0.41127	-0.00020574	-1.5821	-0.00079145	-1.9933	-0.00099719	500.761865624441	24.586	0.3122	24.586	24.429	24.741	0					9	6	2	0	0	0	0.03519	1	1100	1100		37.159	0	1	20789	+		13826	29009	9717	9735	15145	15145					0.007983651776157785
EPTPFWVPN	9	Unmodified	_EPTPFWVPN_					0	0	0		ENSG00000163521|ENST00000295759|GLB1L;nc|ENSG00000163521|Q6UWU2-2|GLB1L	ENSG00000163521|ENST00000295759|GLB1L	ENSG00000163521|ENST00000295759|GLB1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.8217163085938	2	543.766374	1085.5182	0.18941	0.00010299	1.5841	0.00086137	1.7735	0.00096436	544.2686156807445	68.413	0.52062	68.17	67.909	68.43	-0.24278					18	12	2	0	0	0	0.024506	1	7878	7878		16.473	0	1	95442			13827	7097	9718	9736	15146	15146					-0.021142324480933894
EPTPFWVPN	9	Unmodified	_EPTPFWVPN_					0	0	0		ENSG00000163521|ENST00000295759|GLB1L;nc|ENSG00000163521|Q6UWU2-2|GLB1L	ENSG00000163521|ENST00000295759|GLB1L	ENSG00000163521|ENST00000295759|GLB1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.766374	1085.5182	-0.17478	-9.5041E-05	2.5318	0.0013767	2.3571	0.0012817	543.7679722257434	68.342	0.64217	68.111	67.917	68.559	-0.23047	-0.024142	0.00045769	NaN	15.642	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67736			13828	7097	9718	9736							-0.021142324480933894
EPTPGHNAAW	10	Unmodified	_EPTPGHNAAW_					0	0	0		ENST00000300456.4_1_9:131103041-131107595:+|nuORF;nc|ENSG00000167114|Q6P1M0-2|SLC27A4	ENST00000300456.4_1_9:131103041-131107595:+|nuORF	ENST00000300456.4_1_9:131103041-131107595:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.79443359375	2	540.24888	1078.48321	-1.4548	-0.00078598	-2.772	-0.0014975	-4.2268	-0.0022835	540.247236976845	51.638	0.59686	51.367	51.161	51.758	-0.27123					25	15	2	0	0	0	0.03519	1	5317	5317		44.377	6.5657	1	322040			13829	11903	9719	9737	15147	15147					-0.05289475256040532
EPTPLLGSDL	10	Unmodified	_EPTPLLGSDL_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8106079101562	2	521.276772	1040.53899	-0.77376	-0.00040334	2.2126	0.0011534	1.4389	0.00075005	521.2778509365637	83.706	0.68677	83.615	83.3	83.987	-0.090454					31	15	3	0	0	0	0.03519	1	10398	10398		24.519	8.046	1	306980	+		13830	26178	9720	9738	15148	15148					0.020343131409163107
EPTPPTSFS	9	Unmodified	_EPTPPTSFS_					0	0	0			REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.302734375	2	481.726915	961.439277	0.20287	9.7728E-05	4.2054	0.0020259	4.4083	0.0021236	481.72866672607137	73.546	0.47032	73.27	73.051	73.522	-0.2769					24	11	3	0	0	0	0.024457	1	8622	8622		21.96	0	1	312000	+		13831	21102	9721	9739	15149	15149					-0.042985044730244226
EPTPSQGCALY	11	Unmodified	_EPTPSQGCALY_					0	0	0		ENST00000418724.1_1_6:33282259-33282403:-|nuORF	ENST00000418724.1_1_6:33282259-33282403:-|nuORF	ENST00000418724.1_1_6:33282259-33282403:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.3338623046875	2	583.263339	1164.51212	0.24698	0.00014406	-2.6604	-0.0015517	-2.4134	-0.0014077	583.2618750912214	85.024	0.70508	84.821	84.502	85.207	-0.20329					24	16	2	0	0	0	0.024771	1	10276	10276		51.193	23.111	1	277790			13832	13941	9722	9740	15150	15150					-0.06355118741907972
EPTPSQGCALY	11	Unmodified	_EPTPSQGCALY_					0	0	0		ENST00000418724.1_1_6:33282259-33282403:-|nuORF	ENST00000418724.1_1_6:33282259-33282403:-|nuORF	ENST00000418724.1_1_6:33282259-33282403:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	583.263339	1164.51212	-0.38922	-0.00022702	-1.7131	-0.00099918	-2.1023	-0.0012262	583.2623345793763	84.951	0.66302	84.951	84.709	85.372	0	0.119	0.00086713	NaN	51.193	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220780			13833	13941	9722	9740							-0.06355118741907972
EPTQQPPL	8	Unmodified	_EPTQQPPL_					0	0	0			REV__ENSG00000167281|ENST00000693108|RBFOX3	REV__ENSG00000167281|ENST00000693108|RBFOX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2379455566406	2	455.23745	908.460347	-0.11418	-5.198E-05	-0.53038	-0.00024145	-0.64456	-0.00029343	455.23709140982135	102.93	0.71021	102.8	102.54	103.25	-0.12783					37	16	3	0	0	0	1.0133	1	12819	12819		35.201	4.6971	1	2037700	+		13834	26124	9723	9741	15151	15151					0.002455056264693667
EPTSGFAF	8	Unmodified	_EPTSGFAF_					0	0	0		ENST00000371315.3_1_X:119738605-119738683:+|nuORF	ENST00000371315.3_1_X:119738605-119738683:+|nuORF	ENST00000371315.3_1_X:119738605-119738683:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7297668457031	2	428.197793	854.381034	-0.13962	-5.9784E-05	3.4306	0.001469	3.291	0.0014092	428.1983408743741	29.171	0.21972	28.998	28.85	29.07	-0.17258					5	4	2	0	0	0	0.027866	1	1741	1741		14.664	1.7049	1	10539			13835	12988	9724	9742	15152	15152					-0.051981413276621424
EPTSPPPVR	9	Unmodified	_EPTSPPPVR_					0	0	0			REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.29266357421875	2	490.263999	978.513445	0.20117	9.8627E-05	-0.78249	-0.00038363	-0.58132	-0.000285	490.26364411584933	37.457	0.7743	37.457	37.195	37.969	0					57	21	3	0	0	0	0.024495	1	3038	3038		34.173	0	1	7196400	+		13836	34738	9725	9743	15153	15153					0.02332883409144415
EPTSPPPVR	9	Unmodified	_EPTSPPPVR_					0	0	0			REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.263999	978.513445	-0.094432	-4.6297E-05	-0.62635	-0.00030708	-0.72079	-0.00035338	490.26373207727175	37.292	0.95886	37.229	36.978	37.937	-0.063389	-0.15606	-6.8147E-05	NaN	40.778	70	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6852400	+		13837	34738	9725	9743							0.02332883409144415
EPTTLELAF	9	Unmodified	_EPTTLELAF_					0	0	0			REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF	REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.76470947265625	2	510.76604	1019.51753	-0.88574	-0.0004524	-2.5331	-0.0012938	-3.4188	-0.0017462	510.76480444062497	25.678	1.3301	25.678	25.285	26.615	0					83	31	5	0	0	0	0.4752	1	1271	1271		60.972	10.947	1	7841600	+		13838	29589	9726	9744	15154	15154					0.008549281121986496
EPTTSDKPP	9	Unmodified	_EPTTSDKPP_					0	0	0			REV__ENSG00000122965|ENST00000261741|RBM19	REV__ENSG00000122965|ENST00000261741|RBM19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.8050537109375	2	486.237647	970.460741	-0.56937	-0.00027685	1.0785	0.00052439	0.50909	0.00024754	486.2383181744835	34.562	0.61198	34.562	34.332	34.944	0					21	15	2	0	0	0	0.024205	1	2601	2601		44.117	0	1	116930	+		13839	22671	9727	9745	15155	15155					-0.025671194443361856
EPTTVPGLL	9	Unmodified	_EPTTVPGLL_					0	0	0			REV__ENSG00000161800|ENST00000312377|RACGAP1	REV__ENSG00000161800|ENST00000312377|RACGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.2518005371094	2	463.7633	925.512048	-0.69711	-0.00032329	-3.6417	-0.0016889	-4.3388	-0.0020122	463.7614608725413	27.539	0.38593	27.371	27.142	27.528	-0.16816					12	8	2	0	0	0	0.024506	1	1516	1516		16.473	0	1	50866	+		13840	25399	9728	9746	15156	15156					0.04631249320379993
EPTVWSSE	8	Unmodified	_EPTVWSSE_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7311706542969	2	467.711265	933.407977	0.79423	0.00037147	4.1206	0.0019272	4.9148	0.0022987	467.7131717379878	59.97	0.39771	59.97	59.745	60.143	0					15	10	2	0	0	0	0.027866	1	6903	6903		85.359	0	1	226800	+		13841	24424	9729	9747	15157	15157					-0.061390775071231474
EPTWSVLQL	9	Unmodified	_EPTWSVLQL_					0	0	0			REV__ENST00000375960.6_1_9:88969206-88969242:-|nuORF	REV__ENST00000375960.6_1_9:88969206-88969242:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3074951171875	2	536.787307	1071.56006	-0.29273	-0.00015713	1.2039	0.00064626	0.91122	0.00048913	536.7872228747406	68.225	0.54546	67.932	67.705	68.251	-0.29266					17	13	2	0	0	0	0.023239	1	8180	8180		74.255	12.148	1	306080	+		13842	31345	9730	9748	15158	15158					0.02714323240434169
EPVAIITI	8	Unmodified	_EPVAIITI_					0	0	0			REV__ENST00000319264.3_1_9:12775658-12775754:+|nuORF	REV__ENST00000319264.3_1_9:12775658-12775754:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2618103027344	2	428.262936	854.51132	-0.55429	-0.00023738	-2.187	-0.0009366	-2.7413	-0.001174	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	0.99042	1	11083	11083		38.806	1.7777	1	83817000	+		13843	30322	9731	9749	15159	15159					0.0782445467133357
EPVAIITI	8	Unmodified	_EPVAIITI_					0	0	0			REV__ENST00000319264.3_1_9:12775658-12775754:+|nuORF	REV__ENST00000319264.3_1_9:12775658-12775754:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2620544433594	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0133	1	11049	11049		35.201	5.3592	1	68116000	+		13844	30322	9731	9749	15160	15160					0.0782445467133357
EPVAKLHD	8	Unmodified	_EPVAKLHD_					0	0	0		ENST00000382159.7_1_19:2514355-2514436:-|nuORF	ENST00000382159.7_1_19:2514355-2514436:-|nuORF	ENST00000382159.7_1_19:2514355-2514436:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7453308105469	2	454.745442	907.476331	0.6119	0.00027826	-1.9362	-0.0008805	-1.3243	-0.00060224	454.74447025012137	101.61	1.8033	101.48	100.73	102.53	-0.13157					101	41	4	0	0	0	1.0516	1	12682	12682		29.15	3.6994	1	2784600			13845	13357	9732	9750	15161	15161					0.01889211863363016
EPVALQEMD	9	Unmodified	_EPVALQEMD_					0	0	0		nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF;nc|ENSG00000167549|Q6QEF8-3|CORO6;nc|ENSG00000167549|Q6QEF8-2|CORO6;ENST00000459686.5_1_17:27942752-27944279:-|nuORF;ENST00000579388.5_1_17:27942752-27944279:-|nuORF;nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7694091796875	2	516.239332	1030.46411	0.015082	7.7861E-06	0.050639	2.6142E-05	0.065721	3.3928E-05	516.2393319918828	50.256	0.4138	50.151	49.933	50.347	-0.10558					15	10	2	0	0	0	0.024506	1	5108	5108		30.504	0	1	110550			13846	14894	9733	9751	15162	15162					-0.0499019266196683
EPVASSPEPAP	11	Unmodified	_EPVASSPEPAP_					0	0	0		ENST00000476176.5_1_3:182804571-182817247:-|nuORF;ENST00000466650.5_1_3:182788929-182817286:-|nuORF	ENST00000476176.5_1_3:182804571-182817247:-|nuORF	ENST00000476176.5_1_3:182804571-182817247:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7644653320312	2	540.764029	1079.5135	-0.15462	-8.3614E-05	0.78863	0.00042646	0.634	0.00034285	540.7643553531553	49.856	1.6841	49.751	49.373	51.057	-0.10558					123	44	5	0	0	0	0.93615	1	5021	5021		49.442	6.5773	1	11601000			13847	14819	9734	9752	15163	15163					-0.023071613815318415
EPVASSPEPAP	11	Unmodified	_EPVASSPEPAP_					0	0	0		ENST00000476176.5_1_3:182804571-182817247:-|nuORF;ENST00000466650.5_1_3:182788929-182817286:-|nuORF	ENST00000476176.5_1_3:182804571-182817247:-|nuORF	ENST00000476176.5_1_3:182804571-182817247:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.7642211914062	2	540.764029	1079.5135	-0.2368	-0.00012805	0.8826	0.00047728	0.6458	0.00034922	540.7643940942081	50.096	1.755	49.816	49.397	51.152	-0.27977					119	46	4	0	0	0	0.95124	1	5073	5073		47.657	1.7054	1	11668000			13848	14819	9734	9752	15164	15164					-0.023071613815318415
EPVFVPAPGTN	11	Unmodified	_EPVFVPAPGTN_					0	0	0		nc|ENSG00000197580|Q9BYV7-6|BCO2;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2;ENST00000532673.1_1_11:112086906-112088594:+|nuORF	nc|ENSG00000197580|Q9BYV7-6|BCO2	nc|ENSG00000197580|Q9BYV7-6|BCO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2804565429688	2	564.290214	1126.56587	0.096528	5.447E-05	1.1111	0.00062698	1.2076	0.00068145	564.2907255884336	47.639	0.33843	47.369	47.125	47.463	-0.26939					10	8	2	0	0	0	0.024731	1	4637	4637		35.152	20.287	1	97475			13849	10019	9735	9753	15165	15165					0.007654217521121609
EPVHKKIE	8	Unmodified	_EPVHKKIE_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.29266357421875	2	490.282192	978.549831	-0.070363	-3.4498E-05	-0.40639	-0.00019925	-0.47675	-0.00023374	490.2854110208003	37.545	0.6541	37.545	37.081	37.735	0					34	17	3	0	0	0	0.027866	1	3038	3038		30.504	11.4	1	274600	+		13850	27144	9736	9754	15166	15166					0.05969760305845284
EPVIPPGVPD	10	Unmodified	_EPVIPPGVPD_					0	0	0		nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40;nc|ENSG00000141519|Q4G0X9-5|CCDC40;nc|ENSG00000141519|Q4G0X9-4|CCDC40	nc|ENSG00000141519|Q4G0X9-2|CCDC40	nc|ENSG00000141519|Q4G0X9-2|CCDC40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8125915527344	2	510.274032	1018.53351	-0.081755	-4.1717E-05	4.0685	0.0020761	3.9868	0.0020343	510.2756709845281	104.21	0.21494	104.22	104.06	104.28	0.0031357					6	4	2	0	0	0	0.03519	1	13334	13334		44.117	12.162	1	24439			13851	5502	9737	9755	15167	15167					0.02498634349092299
EPVIYVVQ	8	Unmodified	_EPVIYVVQ_					0	0	0		ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.23797607421875	2	473.765843	945.517133	0.93065	0.00044091	-0.91251	-0.00043231	0.018146	8.5969E-06	473.7643931205235	72.091	0.61671	72.101	71.953	72.57	0.0097733					19	15	2	0	0	0	0.027866	1	8742	8742		29.15	0	1	114100			13852	889	9738	9756	15168	15168					0.04219553183008884
EPVKKSRL	8	Unmodified	_EPVKKSRL_					0	0	0		ENSG00000110092|ENST00000227507|CCND1;CCND1-FGF4|1|fusion	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7976379394531	2	478.798009	955.581465	0.1919	9.1883E-05	-0.52219	-0.00025002	-0.33028	-0.00015814	478.7978788639698	18.582	0.39628	18.379	18.163	18.559	-0.20371					16	7	4	0	0	0	0.98759	1	317	317		39.253	5.7372	1	159800			13853	3023	9739	9757	15169	15169					0.10189753059808027
EPVKLRVV	8	Unmodified	_EPVKLRVV_					0	0	0			REV__nc|nan|Q96M02-2|C10orf90	REV__nc|nan|Q96M02-2|C10orf90	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7691955566406	2	470.302927	938.591301	-0.63235	-0.0002974	0.57486	0.00027036	-0.057487	-2.7036E-05	470.3028159714895	64.922	0.81178	64.922	64.347	65.158	0					39	21	3	0	0	0	0.027866	1	7638	7638		33.516	10.473	1	227160	+		13854	24964	9740	9758	15170	15170					0.11954941065187086
EPVKNQAPM	9	Unmodified	_EPVKNQAPM_					0	0	0		nc|ENSG00000171533|Q96JE9-3|MAP6;ENSG00000171533|ENST00000304771|MAP6	nc|ENSG00000171533|Q96JE9-3|MAP6	nc|ENSG00000171533|Q96JE9-3|MAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.27728271484375	2	507.257859	1012.50117	-0.36486	-0.00018508	-2.8035	-0.0014221	-3.1684	-0.0016072	507.2562494860227	54.637	0.81252	54.49	53.949	54.761	-0.14609					31	22	2	0	0	0	0.024405	1	5858	5858		35.618	3.6634	1	161750			13855	8167	9741	9759	15171	15171					-0.004584763255479629
EPVKTLET	8	Unmodified	_EPVKTLET_					0	0	0		ENST00000356613.3_2_8:143692539-143692569:-|nuORF	ENST00000356613.3_2_8:143692539-143692569:-|nuORF	ENST00000356613.3_2_8:143692539-143692569:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.78717041015625	2	458.752933	915.491313	-0.25075	-0.00011503	4.1975	0.0019256	3.9467	0.0018106	458.75556834257446	27.239	0.21456	27.082	26.93	27.145	-0.15664					6	4	2	0	0	0	0.027866	1	1464	1464		27.882	11.409	1	52251			13856	12674	9742	9760	15172	15172					0.030186589407207975
EPVLLCRWR	9	Unmodified	_EPVLLCRWR_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;ENST00000568983.5_1_16:89811164-89816202:-|nuORF;ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENSG00000187741|ENST00000389301|FANCA;ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.8406982421875	2	586.323868	1170.63318	-0.58801	-0.00034476	1.1501	0.00067431	0.56206	0.00032955	586.8246819435113	53.233	0.53688	53.043	52.672	53.208	-0.18982					33	13	5	0	0	0	0.024477	1	5533	5533		20.947	0	1	285010			13857	9654;11991	9743	9761	15173	15173					0.05469173482038059
EPVLNLSRLQ	10	Unmodified	_EPVLNLSRLQ_					0	0	0			REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8033447265625	2	584.837862	1167.66117	-0.93132	-0.00054467	-4.2743	-0.0024998	-5.2057	-0.0030445	584.8356788319794	53.719	0.17894	53.473	53.311	53.49	-0.2453					6	4	2	0	0	0	0.03519	1	5619	5619		40.058	19.111	1	877240	+		13858	21690	9744	9762	15174	15174					0.08404774943142002
EPVMERLVRIR	11	Unmodified	_EPVMERLVRIR_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.60821533203125	3	466.606373	1396.79729	1.035	0.00048292	2.5818	0.0012047	3.6168	0.0016876	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.044	1	12732	12732		26.75	4.9693	1	655350	+		13859	31474	9745	9763	15175	15175					0.11476146182167213
EPVMERLVRIR	11	Unmodified	_EPVMERLVRIR_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MSMS	OPSCC_39_ClassI_Rep-3	3	466.6082763671875	3	466.606373	1396.79729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.862	1	99.856	99.356	100.36	-0.0050888								0	0	0	1.3321	1	12695	12695		24.232	1.6702	1		+		13860	31474	9745	9763	15176	15176					0.11476146182167213
EPVNPSELP	9	Unmodified	_EPVNPSELP_					0	0	0		ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000586276.5_1_17:42931463-42937758:-|nuORF;nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2	ENST00000590367.5_1_17:42931463-42950195:-|nuORF;nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2484436035156	2	491.248015	980.481476	0.16131	7.9244E-05	-0.1905	-9.3583E-05	-0.029188	-1.4339E-05	491.24775066173095	68.758	1.1431	68.465	68.132	69.275	-0.29267					61	29	4	0	0	0	0.70156	1	8205	8205		45.972	0.020292	1	1958600			13861	2945;17331	9746	9764	15177	15177					-0.009545290646656213
EPVNPSELP	9	Unmodified	_EPVNPSELP_					0	0	0		ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000586276.5_1_17:42931463-42937758:-|nuORF;nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2	ENST00000590367.5_1_17:42931463-42950195:-|nuORF;nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	491.248015	980.481476	0.13486	6.6248E-05	-0.057219	-2.8109E-05	0.077638	3.8139E-05	491.24786050752704	68.45	0.82254	68.469	68.118	68.941	0.018913	0.028447	2.5388E-05	NaN	45.972	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2569100			13862	2945;17331	9746	9764							-0.009545290646656213
EPVPLPARL	9	Unmodified	_EPVPLPARL_					0	0	0			REV__ENST00000484847.5_1_7:50343903-50367553:+|nuORF	REV__ENST00000484847.5_1_7:50343903-50367553:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.77423095703125	2	496.300384	990.586216	-0.24359	-0.00012089	0.15463	7.6742E-05	-0.088959	-4.415E-05	496.3004052404768	73.501	0.40829	73.23	73.05	73.459	-0.27126					17	10	2	0	0	0	0.024487	1	8932	8932		24.203	7.7296	1	174180	+		13863	33548	9747	9765	15178	15178					0.0905463720255284
EPVQRILIA	9	Unmodified	_EPVQRILIA_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8184204101562	2	519.818941	1037.62333	-0.056133	-2.9179E-05	0.036096	1.8763E-05	-0.020038	-1.0416E-05	519.818828771512	72.037	1.205	72.037	71.904	73.109	0					64	29	4	0	0	0	0.31037	1	8764	8764		74.255	8.4519	1	8634400			13864	5278	9748	9766	15179	15179					0.10602308748343603
EPVRAKPN	8	Unmodified	_EPVRAKPN_					0	0	0			REV__ENST00000488793.1_1_1:218578572-218607636:+|nuORF	REV__ENST00000488793.1_1_1:218578572-218607636:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2692565917969	2	455.758884	909.503215	0.65155	0.00029695	-0.6761	-0.00030814	-0.02455	-1.1189E-05	455.75840664698836	47.295	0.69305	47.142	46.817	47.51	-0.15301					45	18	4	0	0	0	0.027866	1	4771	4771		19.997	8.4858	1	2586900	+		13865	20943	9749	9767	15180	15180					0.04484320474557535
EPVSDLQLGLD	11	Unmodified	_EPVSDLQLGLD_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.3447265625	2	593.303518	1184.59248	-1.5817	-0.00093845	-1.7128	-0.0010162	-3.2945	-0.0019547	593.3022863886088	61.235	0.37441	61.059	60.914	61.289	-0.1761					10	8	2	0	0	0	0.024759	1	6852	6852		56.434	11.903	1	82804			13866	771	9750	9768	15181	15181					0.007570658527583873
EPVSLIMCQL	10	Unmodified	_EPVSLIMCQL_					0	0	0			REV__ENST00000381477.7_1_9:5908925-5909063:+|nuORF	REV__ENST00000381477.7_1_9:5908925-5909063:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7344970703125	2	566.790678	1131.5668	0.21202	0.00012017	-2.168	-0.0012288	-1.9559	-0.0011086	566.7887938449275	58.373	1.3662	58.183	58.02	59.386	-0.19018					46	33	2	0	0	0	0.03519	1	6577	6577		31.53	16.866	1	230400	+		13867	31520	9751	9769	15182	15182					0.006281768051394465
EPVTRQDDP	9	Unmodified	_EPVTRQDDP_					0	0	0			REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF	REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3334350585938	2	528.751453	1055.48835	-0.45496	-0.00024056	4.2817	0.0022639	3.8267	0.0020234	528.7535654775597	72.366	1.051	72.168	71.909	72.96	-0.19811					31	24	2	0	0	0	0.024427	1	8566	8566		26.693	0	1	401680	+		13868	34188	9752	9770	15183	15183					-0.03717216184099925
EPVVERLAE	9	Unmodified	_EPVVERLAE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3046264648438	2	521.282389	1040.55022	-0.59369	-0.00030948	-3.0001	-0.0015639	-3.5938	-0.0018734	521.7823582963061	93.435	0.1691	93.431	93.326	93.495	-0.0042038					5	3	2	0	0	0	0.024477	1	11833	11833		20.947	0	1	23815	+		13869	25017	9753	9771	15184	15184					0.031571352350511006
EPVYFYIYTL	10	Unmodified	_EPVYFYIYTL_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;DPY19L3|p.G455Afs*5|1|0.45|ENSG00000178904|chr19:32463401-32463401|A/-|frameshift_variant	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7406005859375	3	436.55679	1306.64854	-0.15424	-6.7334E-05	-3.6637	-0.0015994	-3.818	-0.0016668	436.5551233147036	45.21	0.44081	45.21	44.97	45.41	0					17	12	2	0	0	0	0.03519	1	4355	4355		26.063	0	1	63709			13870	8842	9754	9772	15185	15185					0.0074831876024745725
EPVYIVTELM	10	Unmodified	_EPVYIVTELM_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.7747192382812	2	597.309758	1192.60496	-1.1926	-0.00071234	4.1756	0.0024942	2.9831	0.0017818	597.3123122817558	69.295	0.46293	69.032	68.788	69.251	-0.26316					26	10	3	0	0	0	0.03519	1	7996	7996		20.947	0.95016	1	502620			13871	4114	9755	9773	15186	15186					0.01636385991446332
EPWLPFKG	8	Unmodified	_EPWLPFKG_					0	0	0			REV__ENSG00000118492|ENST00000397944|ADGB	REV__ENSG00000118492|ENST00000397944|ADGB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2375793457031	2	487.260728	972.506903	-0.87377	-0.00042576	-1.6085	-0.00078375	-2.4823	-0.0012095	487.25972895156457	48.303	0.50765	48.205	48.114	48.621	-0.097553					18	13	2	0	0	0	0.027866	1	4843	4843		26.796	7.4361	1	90309	+		13872	22408	9756	9774	15187	15187					0.01954990248430022
EPWPSISHLA	10	Unmodified	_EPWPSISHLA_					0	0	0		ENSG00000147613|ENST00000276616|PSKH2	ENSG00000147613|ENST00000276616|PSKH2	ENSG00000147613|ENST00000276616|PSKH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.2738037109375	2	568.790381	1135.56621	-0.48024	-0.00027316	-3.2297	-0.001837	-3.7099	-0.0021102	568.7884410568954	22.241	0.47197	22.166	21.939	22.411	-0.075296					24	9	3	0	0	0	0.03519	1	723	723		20.947	0	1	162560			13873	5982	9757	9775	15188	15188					0.0038484147196413687
EPWQDQVF	8	Unmodified	_EPWQDQVF_					0	0	0		ENST00000496783.1_1_21:43714795-43715068:+|nuORF	ENST00000496783.1_1_21:43714795-43715068:+|nuORF	ENST00000496783.1_1_21:43714795-43715068:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2701416015625	2	524.740357	1047.46616	-0.41874	-0.00021973	-3.4405	-0.0018054	-3.8593	-0.0020251	525.239820912159	35.174	0.14988	34.987	34.911	35.061	-0.18675					5	3	2	0	0	0	0.027866	1	2625	2625		26.796	0	1	32822			13874	15575	9758	9776	15189	15189					-0.055673958618626784
EPYCVKHW	8	Unmodified	_EPYCVKHW_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.7646484375	2	531.247295	1060.48004	-0.92872	-0.00049338	-0.07155	-3.8011E-05	-1.0003	-0.00053139	531.2470806938574	44.773	0.57818	44.562	44.292	44.871	-0.21109					22	14	2	0	0	0	0.027866	1	4231	4231		28.254	14.479	1	553400			13875	5881	9759	9777	15190	15190					-0.0477844163442569
EPYCVKHW	8	Unmodified	_EPYCVKHW_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.247295	1060.48004	-1.0442	-0.0005547	0.42292	0.00022468	-0.62123	-0.00033003	531.2471830658902	44.599	0.54115	44.495	44.204	44.745	-0.1037	-0.032095	0.00031174	NaN	13.775	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559160			13876	5881	9759	9777							-0.0477844163442569
EPYCVKHW	8	Unmodified	_EPYCVKHW_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.247295	1060.48004	-1.2033	-0.00063923	0.33824	0.00017969	-0.86502	-0.00045954	531.2472653820754	44.778	0.50399	44.525	44.282	44.786	-0.25252	-0.0021661	0.00022177	NaN	13.775	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625370			13877	5881	9759	9777							-0.0477844163442569
EPYEIQLNQ	9	Unmodified	_EPYEIQLNQ_					0	0	0		nc|ENSG00000196730|P53355-3|DAPK1;ENSG00000196730|ENST00000408954|DAPK1	nc|ENSG00000196730|P53355-3|DAPK1	nc|ENSG00000196730|P53355-3|DAPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.811279296875	2	567.277303	1132.54005	-0.82578	-0.00046845	0.62504	0.00035457	-0.20074	-0.00011388	567.2774820400184	70.91	0.41432	70.921	70.636	71.05	0.010735					12	9	2	0	0	0	0.024456	1	8495	8495		35.152	0	1	109790			13878	9916	9760	9778	15191	15191					-0.020914724902013404
EPYEQWNL	8	Unmodified	_EPYEQWNL_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF;ENST00000464449.1_1_22:26908063-26908398:-|nuORF;ENST00000420242.5_1_22:26906648-26908398:-|nuORF;ENST00000455080.5_1_22:26907091-26908398:-|nuORF;ENST00000405938.5_1_22:26907091-26908398:-|nuORF;ENST00000407690.5_1_22:26906586-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.816162109375	2	539.745639	1077.47673	-0.64874	-0.00035015	-2.4	-0.0012954	-3.0487	-0.0016455	539.7442136785195	37.35	0.54183	37.287	37.014	37.556	-0.063385					25	14	2	0	0	0	0.027866	1	2983	2983		53.351	0	1	284420			13879	14997	9761	9779	15192	15192					-0.05891413207450569
EPYGDDSAPV	10	Unmodified	_EPYGDDSAPV_					0	0	0			REV__nc|ENSG00000213005|Q9NZH4|PTTG3P	REV__nc|ENSG00000213005|Q9NZH4|PTTG3P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.292724609375	2	525.224736	1048.43492	-0.34336	-0.00018034	1.134	0.00059561	0.79065	0.00041527	525.225192575134	81.366	0.4566	81.224	80.984	81.441	-0.14248					15	10	2	0	0	0	0.03519	1	9754	9754		40.778	16.259	1	106120	+		13880	37124	9762	9780	15193	15193					-0.08736013686620936
EPYHFPPL	8	Unmodified	_EPYHFPPL_					0	0	0		ENST00000280346.10_1_11:111895897-111896233:+|nuORF	ENST00000280346.10_1_11:111895897-111896233:+|nuORF	ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.271240234375	2	500.25036	998.486168	-0.59692	-0.00029861	3.489	0.0017454	2.8921	0.0014468	500.25196219802496	21.654	0.76728	21.726	21.499	22.266	0.071487					21	15	2	0	0	0	0.027866	1	698	698		46.766	0	1	35182			13881	11713	9763	9781	15194	15194					-0.0131360013124322
EPYKPQWCR	9	Unmodified	_EPYKPQWCR_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5513916015625	3	402.862331	1205.56516	1.4758	0.00059456	2.5196	0.0010151	3.9954	0.0016096	402.86325134944894	23.443	0.49708	23.252	22.988	23.485	-0.19117					17	11	2	0	0	0	0.024381	1	900	900		16.717	0	1	214490			13882	9891	9764	9782	15195	15195					-0.02939696168618866
EPYMCAQCKTD	11	Carbamidomethyl (C)	_EPYMCAQC(Carbamidomethyl (C))KTD_	EPYMC(0.059)AQC(0.941)KTD		EPYMC(-12)AQC(12)KTD		0	1	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.1772766113281	3	449.178891	1344.51484	0.42718	0.00019188	-2.8882	-0.0012973	-2.461	-0.0011054	449.17743316322776	53.165	0.69102	52.906	52.644	53.335	-0.25839					41	17	3	0	0	0	0.95317	1	5551	5551		47.228	13.141	2	1198900			13883	7692	9765	9783	15196	15196	91				-0.14363354670945228
EPYMCAQCKTD	11	Carbamidomethyl (C)	_EPYMCAQC(Carbamidomethyl (C))KTD_					0	1	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	449.178891	1344.51484	0.0081189	3.6469E-06	-2.5899	-0.0011633	-2.5818	-0.0011597	449.1775748633388	53.004	0.54546	52.814	52.551	53.096	-0.18982	-0.020501	4.5255E-05	NaN	47.228	45	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1304600			13884	7692	9765	9783			91				-0.14363354670945228
EPYPDKRYVKT	11	Unmodified	_EPYPDKRYVKT_					0	0	0			REV__nc|ENSG00000104067|Q07157|TJP1	REV__nc|ENSG00000104067|Q07157|TJP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.893310546875	3	465.913748	1394.71942	-0.26211	-0.00012212	-3.5964	-0.0016756	-3.8585	-0.0017977	465.91250611446696	30.05	0.34911	29.901	29.75	30.099	-0.14952					10	7	2	0	0	0	0.024738	1	1865	1865		19.627	0	1	45649	+		13885	21416	9766	9784	15197	15197					0.037844117977329006
EPYPMDFYSL	10	Unmodified	_EPYPMDFYSL_					0	0	0			REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	631.2752075195312	2	631.275915	1260.53728	0.80784	0.00050997	-1.6306	-0.0010294	-0.82276	-0.00051939	631.275006527614	58.785	1.25	58.785	58.495	59.745	0					86	33	5	0	0	0	0.60198	2	6686	6686;6701		76.774	10.345	1	6327600	+		13886	37572	9767	9785	15198;15199	15198					-0.08257063939345244
EPYPMDFYSL	10	Unmodified	_EPYPMDFYSL_					0	0	0			REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	631.275390625	2	631.275915	1260.53728	0.23266	0.00014688	-0.96287	-0.00060784	-0.73021	-0.00046096	631.2754108318671	58.674	1.1746	58.765	58.486	59.661	0.091217					86	31	5	0	0	0	0.60198	2	6575	6575;6600		76.774	10.345	1	6633300	+		13887	37572	9767	9785	15200;15201	15200					-0.08257063939345244
EPYPMDFYSL	10	Unmodified	_EPYPMDFYSL_					0	0	0			REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	631.275915	1260.53728	0.80784	0.00050997	-1.6306	-0.0010294	-0.82276	-0.00051939	631.275006527614	58.785	1.25	58.785	58.495	59.745	0	-0.10587	-0.00048229	NaN	76.774	86	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6327600	+		13888	37572	9767	9785							-0.08257063939345244
EPYPMDFYSL	10	Unmodified	_EPYPMDFYSL_					0	0	0			REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	631.275915	1260.53728	0.23266	0.00014688	-0.96287	-0.00060784	-0.73021	-0.00046096	631.2754108318671	58.674	1.1746	58.765	58.486	59.661	0.091217	-0.1256	0.00036075	NaN	76.774	86	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6633300	+		13889	37572	9767	9785							-0.08257063939345244
EPYPMDFYSL	10	Unmodified	_EPYPMDFYSL_					0	0	0			REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	631.275915	1260.53728	-0.65355	-0.00041257	1.1179	0.0007057	0.46434	0.00029313	631.2761871679131	59.183	0.72745	58.995	58.702	59.43	-0.18795	0.10435	0.0029878	NaN	76.774	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1688400	+		13890	37572	9767	9785							-0.08257063939345244
EPYPMDFYSL	10	Unmodified	_EPYPMDFYSL_					0	0	0			REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	631.275915	1260.53728	-0.16845	-0.00010634	0.48284	0.00030481	0.3144	0.00019847	631.2759397310358	59.124	0.76721	58.943	58.628	59.395	-0.18133	0.051925	0.002186	NaN	76.774	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1597700	+		13891	37572	9767	9785							-0.08257063939345244
EPYPMDFYSL	10	Unmodified	_EPYPMDFYSL_					0	0	0			REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	REV__SPDEF|p.L66P|1|0.26|ENSG00000124664|chr6:34544259-34544259|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	631.275915	1260.53728	0.32772	0.00020688	-0.055064	-3.4761E-05	0.27265	0.00017212	631.2755550055464	59.24	0.80238	58.998	58.7	59.502	-0.24165	0.10697	0.0015069	NaN	76.774	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1610900	+		13892	37572	9767	9785							-0.08257063939345244
EPYRALVK	8	Unmodified	_EPYRALVK_					0	0	0			REV__ENSG00000184014|ENST00000328194|DENND5A	REV__ENSG00000184014|ENST00000328194|DENND5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7771301269531	2	488.284734	974.554916	-0.17625	-8.6058E-05	3.4752	0.0016969	3.299	0.0016108	488.28620464202385	62.013	0.54959	61.786	61.534	62.084	-0.22663					19	14	2	0	0	0	0.027866	1	7187	7187		25.45	13.243	1	201700	+		13893	27631	9768	9786	15202	15202					0.06662064168460802
EPYSKLLIS	9	Unmodified	_EPYSKLLIS_					0	0	0			REV__ENSG00000186967|ENST00000334058|KRTAP19-4	REV__ENSG00000186967|ENST00000334058|KRTAP19-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.292724609375	2	525.297507	1048.58046	-0.18574	-9.7569E-05	-1.0085	-0.00052975	-1.1942	-0.00062731	525.2965732248329	81.032	0.86768	80.889	80.616	81.483	-0.14248					49	20	4	0	0	0	0.76818	1	9754	9754		41.427	2.1738	1	1115800	+		13894	27901	9769	9787	15203	15203					0.058114939002507526
EPYTKKEL	8	Unmodified	_EPYTKKEL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.2741394042969	2	504.274032	1006.53351	-0.44577	-0.00022479	0.56079	0.00028279	0.11502	5.8004E-05	504.27418882743484	27.092	1.1921	26.85	26.529	27.721	-0.24217					98	27	5	0	0	0	0.38989	3	1480	1447;1456;1480		98.629	16.395	1	7066200			13895	3443	9770	9788	15204;15205;15206	15206					0.030506343490856125
EPYTKKEL	8	Unmodified	_EPYTKKEL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.27410888671875	2	504.274032	1006.53351	-0.434	-0.00021886	0.48269	0.00024341	0.048688	2.4552E-05	504.274135756584	26.875	1.1894	26.707	26.339	27.528	-0.16816					94	27	5	0	0	0	0.30694	3	1425	1415;1425;1449		110.12	16.113	1	5408000			13896	3443	9770	9788	15207;15208;15209	15208					0.030506343490856125
EPYTKKEL	8	Unmodified	_EPYTKKEL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2740783691406	2	504.274032	1006.53351	-0.69955	-0.00035277	0.5459	0.00027528	-0.15365	-7.7482E-05	504.2741904588645	27.025	1.26	26.869	26.464	27.724	-0.15664					102	29	5	0	0	0	0.53593	2	1419	1419;1431		82.241	16.437	1	5875800			13897	3443	9770	9788	15210;15211	15210					0.030506343490856125
EPYTKKEL	8	Unmodified	_EPYTKKEL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.274032	1006.53351	-0.35883	-0.00018095	5.9267	0.0029887	5.5679	0.0028077	504.27732487478886	27.001	0.80348	27.001	26.447	27.251	0	0.1443	0.0051556	NaN	110.12	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207970			13898	3443	9770	9788							0.030506343490856125
EPYTKQQL	8	Unmodified	_EPYTKQQL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7641296386719	2	503.763832	1005.51311	-0.019119	-9.6314E-06	-0.41326	-0.00020819	-0.43238	-0.00021782	503.7635574334774	35.033	1.5652	34.817	34.006	35.571	-0.21556					111	39	5	0	0	0	0.42327	3	2659	2632;2645;2659		94.006	22.629	1	19901000			13899	7843	9771	9789	15212;15213;15214	15214					0.010574636892783928
EPYTKQQL	8	Unmodified	_EPYTKQQL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7635192871094	2	503.763832	1005.51311	-0.47699	-0.00024029	-0.11219	-5.6519E-05	-0.58918	-0.00029681	503.76372654336416	34.998	1.4219	34.786	34.196	35.618	-0.21246					102	35	5	0	0	0	0.42327	3	2619	2607;2619;2631		94.006	17.16	1	18675000			13900	7843	9771	9789	15215;15216;15217	15216					0.010574636892783928
EPYTKQQL	8	Unmodified	_EPYTKQQL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7640686035156	2	503.763832	1005.51311	-0.71814	-0.00036177	0.22827	0.00011499	-0.48987	-0.00024678	503.7639138497815	34.926	1.2108	34.74	34.241	35.452	-0.18675					95	30	5	0	0	0	0.33369	1	2615	2615		106.42	32.44	1	21083000			13901	7843	9771	9789	15218	15218					0.010574636892783928
EPYTSIGKL	9	Unmodified	_EPYTSIGKL_					0	0	0			REV__SYT11|p.I64T|1|0.33|ENSG00000132718|chr1:155868121-155868121|T/C|missense_variant	REV__SYT11|p.I64T|1|0.33|ENSG00000132718|chr1:155868121-155868121|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2738342285156	2	504.274032	1006.53351	-0.69955	-0.00035277	0.5459	0.00027528	-0.15365	-7.7482E-05	504.2741904588645	27.025	1.26	26.869	26.464	27.724	-0.15664					102	29	5	0	0	0	0.42604	1	1443	1443		64.207	0	1	5875800	+		13902	37671	9772	9790	15219	15219					0.0305063434910835
EQALAGAWLL	10	Unmodified	_EQALAGAWLL_					0	0	0			REV__nc|ENSG00000105492|O43699-5|SIGLEC6	REV__nc|ENSG00000105492|O43699-5|SIGLEC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7686157226562	2	536.295299	1070.57605	-0.35726	-0.0001916	-4.4802	-0.0024027	-4.8375	-0.0025943	536.2925080434267	36.899	0.42646	36.835	36.588	37.014	-0.063389					16	10	2	0	0	0	0.03519	1	2933	2933		51.335	23.453	1	258680	+		13903	21531	9773	9791	15220	15220					0.04358029477339187
EQAPRLEE	8	Unmodified	_EQAPRLEE_					0	0	0			REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.795166015625	2	486.243264	970.471974	-0.56767	-0.00027603	-0.34737	-0.00016891	-0.91504	-0.00044493	486.2434036981041	28.349	0.25862	28.345	28.199	28.458	-0.0042019					7	5	2	0	0	0	0.027866	1	1634	1634		42.396	19.354	1	17273	+		13904	27063	9774	9792	15221	15221					-0.01444297350190027
EQDEIEIEL	9	Unmodified	_EQDEIEIEL_					0	0	0			REV__ENSG00000178965|ENST00000326665|ERICH3	REV__ENSG00000178965|ENST00000326665|ERICH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2648315429688	2	559.266601	1116.51865	0.23489	0.00013137	-2.1787	-0.0012185	-1.9438	-0.0010871	559.2652313091266	80.031	0.54608	79.812	79.41	79.957	-0.21923					29	12	3	0	0	0	0.45795	1	9606	9606		62.107	3.3255	1	817110	+		13905	27218	9775	9793	15222	15222					-0.03494902309580539
EQDELELSW	9	Unmodified	_EQDELELSW_					0	0	0			REV__ENSG00000213024|ENST00000352066|NUP62	REV__ENSG00000213024|ENST00000352066|NUP62	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.8115844726562	2	574.758943	1147.50333	0.1226	7.0463E-05	4.3771	0.0025158	4.4996	0.0025862	574.7612039227598	32.345	1.2626	32.152	31.641	32.904	-0.19261					55	29	4	0	0	0	0.024381	1	2188	2188		37.159	0	1	114910	+		13906	28723	9776	9794	15223	15223					-0.06451769106774918
EQDPTNLYI	9	Unmodified	_EQDPTNLYI_					0	0	0		ENST00000492283.1_1_2:161159304-161174707:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ENST00000552916.5_1_12:56956336-56975213:+|nuORF;ENST00000497205.1_1_3:29476395-29781369:+|nuORF;ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|4|fusion	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.7637939453125	2	546.764029	1091.5135	-0.55009	-0.00030077	0.27873	0.0001524	-0.27136	-0.00014837	546.7640736317584	67.351	0.97653	67.351	67.049	68.026	0					69	24	4	0	0	0	0.2508	1	8044	8044		82.241	13.756	1	4128000			13907	6336	9777	9795	15224	15224					-0.028591613815478922
EQDPTNLYI	9	Unmodified	_EQDPTNLYI_					0	0	0		ENST00000492283.1_1_2:161159304-161174707:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ENST00000552916.5_1_12:56956336-56975213:+|nuORF;ENST00000497205.1_1_3:29476395-29781369:+|nuORF;ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|4|fusion	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.76416015625	2	546.764029	1091.5135	-0.62137	-0.00033974	0.52293	0.00028592	-0.098438	-5.3822E-05	546.7641126564824	67.699	1.1072	67.411	67.069	68.176	-0.28834					77	27	4	0	0	0	0.32811	1	8065	8065		71.877	6.0743	1	4039100			13908	6336	9777	9795	15225	15225					-0.028591613815478922
EQDPTNLYI	9	Unmodified	_EQDPTNLYI_					0	0	0		ENST00000492283.1_1_2:161159304-161174707:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ENST00000552916.5_1_12:56956336-56975213:+|nuORF;ENST00000497205.1_1_3:29476395-29781369:+|nuORF;ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3;ITGB6-RBMS1|5|fusion;ITGB6-RBMS1|4|fusion	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.763916015625	2	546.764029	1091.5135	-0.61128	-0.00033422	0.64791	0.00035426	0.036637	2.0032E-05	546.7642626089242	67.43	1.3937	67.454	66.769	68.163	0.023911					76	34	4	0	0	0	0.29158	1	7981	7981		76.774	5.3962	1	4219500			13909	6336	9777	9795	15226	15226					-0.028591613815478922
EQDRSSEEP	9	Unmodified	_EQDRSSEEP_					0	0	0			REV__ENSG00000130182|ENST00000576985|ZSCAN10	REV__ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8048706054688	2	538.728175	1075.4418	-0.83716	-0.000451	1.4412	0.0007764	0.60402	0.0003254	538.7287547508278	37.468	1.0462	37.468	37.12	38.166	0					40	29	2	0	0	0	0.024495	1	3019	3019		26.693	0	1	134710	+		13910	23089	9778	9796	15227	15227					-0.09290700806013774
EQDRSSEEP	9	Unmodified	_EQDRSSEEP_					0	0	0			REV__ENSG00000130182|ENST00000576985|ZSCAN10	REV__ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.728175	1075.4418	-1.7714	-0.00095429	1.9162	0.0010323	0.14484	7.8027E-05	538.7290546142249	37.806	0.78552	37.838	37.715	38.501	0.032269	0.089742	0.0019074	NaN	31.53	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67392	+		13911	23089	9778	9796							-0.09290700806013774
EQDRSSEEP	9	Unmodified	_EQDRSSEEP_					0	0	0			REV__ENSG00000130182|ENST00000576985|ZSCAN10	REV__ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.728175	1075.4418	-1.1388	-0.00061353	-4.4911	-0.0024195	-5.6299	-0.003033	538.7258818181137	38.161	0.32445	37.94	37.761	38.085	-0.22149	0.19096	-0.0049962	NaN	31.53	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97434	+		13912	23089	9778	9796							-0.09290700806013774
EQDVEAAEQGW	11	Unmodified	_EQDVEAAEQGW_					0	0	0			REV__ENSG00000011275|ENST00000389902|RNF216	REV__ENSG00000011275|ENST00000389902|RNF216	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	631.7882690429688	2	631.270207	1260.52586	-0.5062	-0.00031955	1.3289	0.00083887	0.82267	0.00051932	631.2708723444313	53.81	0.50755	53.612	53.35	53.857	-0.19739					24	15	3	0	0	0	0.024745	1	5693	5693		33.922	6.0394	1	631210	+		13913	19924	9779	9797	15228	15228					-0.09398169709129434
EQEAWAVCL	9	Unmodified	_EQEAWAVCL_					0	0	0		ENSG00000171798|ENST00000304613|KNDC1;ENST00000485110.5_1_10:134974025-134992777:+|nuORF;ENST00000478074.5_1_10:134974025-134987473:+|nuORF;ENST00000530127.1_1_10:134977709-134992395:+|nuORF;nc|ENSG00000171798|Q76NI1-4|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2791748046875	2	524.742042	1047.46953	-0.3548	-0.00018618	1.0169	0.00053361	0.66211	0.00034744	524.7421015789597	86.894	0.92772	86.894	86.605	87.532	0					30	21	2	0	0	0	0.024523	1	10964	10964		15.642	0	1	174880			13914	8192	9780	9798	15229	15229					-0.052304690795153874
EQEEKEREG	9	Unmodified	_EQEEKEREG_					0	0	0			REV__ENST00000428599.6_1_11:57529333-57558863:+|nuORF	REV__ENST00000428599.6_1_11:57529333-57558863:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.3128662109375	2	567.257099	1132.49965	-0.48544	-0.00027537	-1.3079	-0.00074193	-1.7934	-0.0010173	567.2546356681793	34.804	0.39548	34.617	34.402	34.798	-0.18675					15	9	2	0	0	0	0.024447	1	2567	2567		32.812	0	1	203610	+		13915	30859	9781	9799	15230	15230					-0.0613043888060929
EQEHATMAYY	10	Unmodified	_EQEHATMAYY_					0	0	0		ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN	ENSG00000095397|ENST00000362057|WHRN	ENSG00000095397|ENST00000362057|WHRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.7599487304688	2	621.75842	1241.50229	0.36142	0.00022471	2.1053	0.001309	2.4667	0.0015337	621.7597054952719	70.932	1.0096	70.66	70.427	71.437	-0.27184					60	24	4	0	0	0	0.66532	1	8283	8283		69.628	8.6557	1	3860900			13916	2026	9782	9800	15231	15231					-0.10880306747299073
EQEIRQHFST	10	Unmodified	_EQEIRQHFST_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.1819763183594	3	425.542314	1273.60511	0.22227	9.4585E-05	3.2388	0.0013783	3.4611	0.0014728	425.54396823988594	34.745	0.2008	34.529	34.388	34.589	-0.21555					5	4	2	0	0	0	0.03519	1	2572	2572		31.634	0	1	53033			13917	8599	9783	9801	15232	15232					-0.020744779643337097
EQEKEPDLES	10	Unmodified	_EQEKEPDLES_					0	0	0			REV__ENSG00000150527|ENST00000640607|MIA2	REV__ENSG00000150527|ENST00000640607|MIA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.55108642578125	3	401.850702	1202.53028	0.69989	0.00028125	1.8183	0.0007307	2.5182	0.001012	401.8513330234448	23.329	0.68254	23.149	22.836	23.519	-0.17989					42	15	5	0	0	0	0.03519	1	916	916		48.602	8.7284	1	519760	+		13918	24721	9784	9802	15233	15233					-0.06288705286237928
EQEKQIKPNLT	11	Unmodified	_EQEKQIKPNLT_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3;ENST00000555415.1_1_14:75483787-75485735:-|nuORF	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7899169921875	3	443.245386	1326.71433	-0.75116	-0.00033295	2.2395	0.00099265	1.4883	0.0006597	443.24608456342037	30.474	0.54262	30.296	30.04	30.583	-0.17818					37	12	4	0	0	0	0.024774	1	1954	1954		52.167	19.128	1	379470			13919	3753	9785	9803	15234	15234					0.06404107935145475
EQEKQIKPNLT	11	Unmodified	_EQEKQIKPNLT_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3;ENST00000555415.1_1_14:75483787-75485735:-|nuORF	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.7898254394531	3	443.245386	1326.71433	0.15779	6.9938E-05	0.58407	0.00025889	0.74186	0.00032882	443.2455373188737	30.498	0.83647	30.348	30.012	30.849	-0.14952					33	19	3	0	0	0	0.024765	1	1930	1930		47.228	8.5136	1	392460			13920	3753	9785	9803	15235	15235					0.06404107935145475
EQEKQIKPNLT	11	Unmodified	_EQEKQIKPNLT_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3;ENST00000555415.1_1_14:75483787-75485735:-|nuORF	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	443.245386	1326.71433	-0.55803	-0.00024735	1.5232	0.00067514	0.96515	0.0004278	443.24599139452505	30.551	0.58693	30.307	30.079	30.666	-0.24415	-0.010168	0.00041325	NaN	47.228	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511390			13921	3753	9785	9803							0.06404107935145475
EQEQRRPRPE	10	Unmodified	_EQEQRRPRPE_					0	0	0		ENST00000390645.2_1_2:235405483-235405693:-|nuORF	ENST00000390645.2_1_2:235405483-235405693:-|nuORF	ENST00000390645.2_1_2:235405483-235405693:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.7348937988281	3	442.22873	1323.66436	2.2149	0.0009795	3.7115	0.0016413	5.9265	0.0026208	442.23035253918243	23.9	0.26596	23.72	23.582	23.848	-0.18089					7	5	2	0	0	0	0.03519	1	949	949		17.833	0	1	19755			13922	13390	9786	9804	15236	15236					0.015474180498586065
EQFIIQAKI	9	Unmodified	_EQFIIQAKI_					0	0	0		ENSG00000155816|ENST00000319653|FMN2;nc|ENSG00000155816|Q9NZ56-2|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3168334960938	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.82115	1	10932	10932		37.812	3.8899	1	3635800			13923	6488	9787	9805	15237	15237					0.08222889028479585
EQFKKTSL	8	Unmodified	_EQFKKTSL_					0	0	0		ENST00000598597.6_1_19:15465728-15479935:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENST00000598597.6_1_19:15465728-15479935:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.773681640625	2	490.7742	979.533846	-0.61105	-0.00029989	-0.80503	-0.00039509	-1.4161	-0.00069498	490.77359688981244	28.091	0.52688	27.922	27.768	28.294	-0.16897					30	12	4	0	0	0	0.91956	1	1620	1620		49.442	3.4693	1	817420			13924	2636	9788	9806	15238	15238					0.043260540689630034
EQFLLPVI	8	Unmodified	_EQFLLPVI_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7842102050781	2	479.784036	957.553519	0.82665	0.00039661	-0.61017	-0.00029275	0.21648	0.00010386	479.7836052724121	96.636	1.3272	96.642	96.353	97.68	0.0065002					74	29	5	0	0	0	0.33369	1	12286	12286		106.42	3.6419	1	2246700			13925	8855	9789	9807	15239	15239					0.07304430079705071
EQFLLPVI	8	Unmodified	_EQFLLPVI_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.78424072265625	2	479.784036	957.553519	1.0358	0.00049695	-0.81309	-0.00039011	0.22269	0.00010684	479.7834953911984	96.749	1.2415	96.749	96.44	97.682	-3.0518E-05					79	27	5	0	0	0	0.77775	1	12293	12293		60.972	0	1	2432500			13926	8855	9789	9807	15240	15240					0.07304430079705071
EQGDKVGEAR	10	Unmodified	_EQGDKVGEAR_					0	0	0		nc|ENSG00000160360|Q86YR5-3|GPSM1;nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1	nc|ENSG00000160360|Q86YR5-3|GPSM1	nc|ENSG00000160360|Q86YR5-3|GPSM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.318359375	2	544.770177	1087.5258	-1.4193	-0.0007732	-2.2147	-0.0012065	-3.634	-0.0019797	544.7693614958785	81.298	0.36887	81.322	81.207	81.576	0.023903					12	8	2	0	0	0	0.03519	1	10079	10079		51.193	1.7511	1	82392			13927	6810	9790	9808	15241	15241					-0.014461249184705594
EQGNLKKALV	10	Unmodified	_EQGNLKKALV_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-5|USP16;ENST00000474835.5_1_21:30400234-30414894:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3273315429688	2	550.327131	1098.63971	-1.2688	-0.00069827	0.48735	0.0002682	-0.78148	-0.00043007	550.3274046393027	51.874	1.4352	51.966	51.615	53.05	0.091942					82	37	3	0	0	0	0.52982	1	5464	5464		84.916	10.941	1	9187200			13928	6518	9791	9809	15242	15242					0.09433389914420331
EQGVSRPGR	9	Unmodified	_EQGVSRPGR_					0	0	0		ENST00000394520.6_1_5:141348648-141350283:+|nuORF	ENST00000394520.6_1_5:141348648-141350283:+|nuORF	ENST00000394520.6_1_5:141348648-141350283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.78509521484375	2	493.262322	984.510091	0.0060784	2.9982E-06	1.1882	0.00058608	1.1942	0.00058908	493.2634967474396	47.613	0.33683	47.46	47.3	47.637	-0.15301					11	9	2	0	0	0	0.024418	1	4779	4779		54.776	24.459	1	99430			13929	13490	9792	9810	15243	15243					0.017216333551459684
EQHRGERYKD	10	Unmodified	_EQHRGERYKD_					0	0	0		ENSG00000268104|ENST00000598581|SLC6A14	ENSG00000268104|ENST00000598581|SLC6A14	ENSG00000268104|ENST00000598581|SLC6A14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.76617431640625	3	439.88133	1316.62216	-0.2396	-0.00010539	4.1133	0.0018094	3.8737	0.001704	440.21739150123057	37.446	0.23851	37.253	37.152	37.39	-0.193					7	5	2	0	0	0	0.03519	1	3005	3005		37.508	5.474	1	126230			13930	10988	9793	9811	15244	15244					-0.023485573585276143
EQHSKELQAHV	11	Unmodified	_EQHSKELQAHV_					0	0	0		nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.2876281738281	3	435.889714	1304.64731	-0.67173	-0.0002928	-3.6827	-0.0016053	-4.3545	-0.0018981	436.2226086814577	26.247	1.6194	26.011	25.593	27.213	-0.23603					55	41	2	0	0	0	0.024742	1	1326	1326		32.034	14.201	1	570090			13931	18172	9794	9812	15245	15245					0.00717497444043147
EQIDHPQFAV	10	Unmodified	_EQIDHPQFAV_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.28857421875	2	592.290745	1182.56694	-0.28246	-0.0001673	-3.4935	-0.0020692	-3.776	-0.0022365	592.2886709852789	21.345	0.57558	21.168	20.87	21.445	-0.17721					31	11	4	0	0	0	0.80817	1	668	668		60.118	18.692	1	238300	+		13932	25473	9795	9813	15246	15246					-0.017043638790028126
EQIDHPQFAV	10	Unmodified	_EQIDHPQFAV_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	592.290745	1182.56694	-0.28246	-0.0001673	-3.4935	-0.0020692	-3.776	-0.0022365	592.2886709852789	21.345	0.57558	21.168	20.87	21.445	-0.17721	-0.063654	-0.00019278	NaN	60.118	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238300	+		13933	25473	9795	9813							-0.017043638790028126
EQIDHPQFAV	10	Unmodified	_EQIDHPQFAV_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.290745	1182.56694	-0.68767	-0.0004073	-2.9982	-0.0017758	-3.6858	-0.0021831	592.2888371349235	21.486	0.63281	21.296	21.029	21.662	-0.19072	0.063654	0.000394	NaN	60.118	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165310	+		13934	25473	9795	9813							-0.017043638790028126
EQIHTILQV	9	Unmodified	_EQIHTILQV_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8157348632812	2	540.806031	1079.59751	-1.6963	-0.00091736	0.91164	0.00049302	-0.78465	-0.00042434	540.8064494451688	45.87	0.92579	45.668	45.194	46.119	-0.20226					38	16	3	0	0	0	0.024374	1	4347	4347		49.442	17.487	1	768770			13935	7084	9796	9814	15247	15247					0.060894145060501614
EQIKGYVLAL	10	Unmodified	_EQIKGYVLAL_					0	0	0			REV__EDC4|p.N210Y|1|0.26|ENSG00000038358|chr16:67877393-67877393|A/T|missense_variant	REV__EDC4|p.N210Y|1|0.26|ENSG00000038358|chr16:67877393-67877393|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3294067382812	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0393	1	11832	11832		40.778	1.972	1	14057000	+		13936	19729	9797	9815	15248	15248					0.08819158199935373
EQIKGYVLAL	10	Unmodified	_EQIKGYVLAL_					0	0	0			REV__EDC4|p.N210Y|1|0.26|ENSG00000038358|chr16:67877393-67877393|A/T|missense_variant	REV__EDC4|p.N210Y|1|0.26|ENSG00000038358|chr16:67877393-67877393|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297119140625	2	567.331882	1132.64921	0.14889	8.447E-05	-3.8286	-0.0021721	-3.6797	-0.0020876	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.0616	1	10849	10849		37.812	3.639	1	5699400	+		13937	19729	9797	9815	15249	15249					0.08819158199935373
EQIKKTEL	8	Unmodified	_EQIKKTEL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7878723144531	2	494.787307	987.560061	-0.17327	-8.5733E-05	-0.15362	-7.6009E-05	-0.32689	-0.00016174	494.7871661253784	25.771	0.8621	25.6	25.288	26.15	-0.17078					57	23	4	0	0	0	0.77775	1	1260	1260		60.972	2.19	1	4757700			13938	2844	9798	9816	15250	15250					0.06578323240421469
EQIKKTEL	8	Unmodified	_EQIKKTEL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7871398925781	2	494.787307	987.560061	-1.0018	-0.00049569	0.29356	0.00014525	-0.70828	-0.00035045	494.7874056551333	25.858	1.2065	25.694	25.373	26.579	-0.16342					62	32	4	0	0	0	0.38451	1	1233	1233		99.375	3.1845	1	5031700			13939	2844	9798	9816	15251	15251					0.06578323240421469
EQIKKTEL	8	Unmodified	_EQIKKTEL_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	494.787307	987.560061	-0.94361	-0.00046689	0.42571	0.00021063	-0.5179	-0.00025625	494.7874861374929	26.019	1.0695	25.783	25.425	26.495	-0.23603	0.090529	0.00020646	NaN	99.375	62	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5868400			13940	2844	9798	9816							0.06578323240421469
EQINRNLE	8	Unmodified	_EQINRNLE_					0	0	0			REV__TEKT4|p.I171N|1|0.33|ENSG00000163060|chr2:94873533-94873533|T/A|missense_variant	REV__TEKT4|p.I171N|1|0.33|ENSG00000163060|chr2:94873533-94873533|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.28778076171875	2	508.261988	1014.50942	-0.43863	-0.00022294	3.5104	0.0017842	3.0718	0.0015613	508.26462642506715	61.713	0.78621	61.784	61.239	62.026	0.071125					29	20	2	0	0	0	0.027866	1	7084	7084		32.812	8.6097	1	970430	+		13941	37683	9799	9817	15252	15252					0.0027479391542328813
EQIQKWIRTRK	11	Unmodified	_EQIQKWIRTRK_					0	0	0		ENST00000555351.1_1_14:97263783-97319303:+|nuORF;ENSG00000100749|ENST00000216639|VRK1	ENST00000555351.1_1_14:97263783-97319303:+|nuORF	ENST00000555351.1_1_14:97263783-97319303:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.958984375	3	495.959803	1484.85758	0.30887	0.00015319	-2.3902	-0.0011855	-2.0814	-0.0010323	495.9586267866749	102.2	1.5211	102.2	101.58	103.1	-0.0054398					89	35	3	0	0	0	1.0811	1	13062	13062		16.53	3.0219	1	815360			13942	2244	9800	9818	15253	15253					0.1345457983684355
EQIRLAQMI	9	Unmodified	_EQIRLAQMI_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.3071899414062	2	551.307884	1100.60121	0.06331	3.4903E-05	-0.55112	-0.00030384	-0.48781	-0.00026893	551.3075831419602	64.415	0.99119	64.415	63.845	64.836	0					57	26	3	0	0	0	0.03849	1	7592	7592		134.81	21.399	1	1541000			13943	5667	9801	9819	15254	15254					0.05493761008256115
EQIRLAQMI	9	Unmodified	_EQIRLAQMI_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.307884	1100.60121	-1.2727	-0.00070163	1.0118	0.00055784	-0.26081	-0.00014378	551.3083994417244	64.645	1.1638	64.382	63.901	65.065	-0.2626	-0.027363	0.0012156	NaN	134.81	61	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1333800			13944	5667	9801	9819							0.05493761008256115
EQIRLAQMI	9	Unmodified	_EQIRLAQMI_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.307884	1100.60121	-0.101	-5.5682E-05	-0.54314	-0.00029944	-0.64414	-0.00035512	551.3075006365377	64.385	0.93581	64.431	64.153	65.089	0.045502	0.021276	-0.00049893	NaN	134.81	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1576800			13945	5667	9801	9819							0.05493761008256115
EQITSNLDAW	10	Unmodified	_EQITSNLDAW_					0	0	0			REV__ENSG00000007866|ENST00000338863|TEAD3	REV__ENSG00000007866|ENST00000338863|TEAD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.2946166992188	2	588.78021	1175.54587	-0.6835	-0.00040243	1.1168	0.00065754	0.43329	0.00025511	588.782018227352	78.308	0.47185	78.053	77.869	78.34	-0.25471					16	10	2	0	0	0	0.03519	1	9323	9323		30.318	0	1	78821	+		13946	19867	9802	9820	15255	15255					-0.03488373978552772
EQKAVREDL	9	Unmodified	_EQKAVREDL_					0	0	0		ENST00000262809.8_1_19:18555463-18555538:-|nuORF	ENST00000262809.8_1_19:18555463-18555538:-|nuORF	ENST00000262809.8_1_19:18555463-18555538:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.33154296875	2	544.290745	1086.56694	-1.3516	-0.00073567	0.83266	0.00045321	-0.51895	-0.00028246	544.2907457254172	44.618	0.37576	44.618	44.417	44.793	0					16	10	2	0	0	0	0.024456	1	4286	4286		42.864	6.4175	1	147340			13947	11513	9803	9821	15256	15256					0.027116361209891693
EQKEEEVVKE	10	Unmodified	_EQKEEEVVKE_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.9035949707031	3	416.21023	1245.60886	-0.22811	-9.494E-05	1.4744	0.00061364	1.2462	0.0005187	416.545036266691	31.628	0.38605	31.387	31.221	31.607	-0.24109					18	9	3	0	0	0	0.03519	1	2154	2154		26.75	0	1	117660	+		13948	22942	9804	9822	15257	15257					-0.004118529811194094
EQKIDLGRPLL	11	Unmodified	_EQKIDLGRPLL_					0	0	0			REV__nc|ENSG00000127946|O00291-3|HIP1	REV__nc|ENSG00000127946|O00291-3|HIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	642.38916015625	2	641.379894	1280.74524	0.23338	0.00014968	2.9821	0.0019127	3.2155	0.0020624	642.3846813514313	105.75	0.57226	105.75	105.41	105.98	0.00014496					45	20	3	0	0	0	1.0521	1	13512	13512		24.519	1.4767	1	187890	+		13949	22953	9805	9823	15258	15258					0.11609306040054435
EQKINIKIETD	11	Unmodified	_EQKINIKIETD_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.29217529296875	3	444.245275	1329.714	-0.50915	-0.00022619	1.7025	0.00075633	1.1934	0.00053014	444.2458994903015	27.996	0.66477	27.751	27.376	28.041	-0.24524					43	15	4	0	0	0	0.024723	1	1620	1620		37.6	5.5658	1	594450	+		13950	25086	9806	9824	15259	15259					0.06232688215277449
EQKKKSFL	8	Unmodified	_EQKKKSFL_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.T205M|1|0.47|ENSG00000213186|chr3:160438570-160438570|G/A|missense_variant;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.29644775390625	2	504.297842	1006.58113	-0.1409	-7.1056E-05	-0.60049	-0.00030283	-0.74139	-0.00037388	504.29746517008283	21.629	1.2364	21.438	21.128	22.364	-0.19072					59	25	5	0	0	0	0.845	1	671	671		55.504	2.1528	1	1707700			13951	18070;10493	9807	9825	15260	15260					0.07810333339955378
EQKKSPYSQDN	11	Unmodified	_EQKKSPYSQDN_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7615051269531	3	441.877363	1322.61026	-1.4998	-0.00066272	2.5462	0.0011251	1.0464	0.00046238	441.8783257063298	38.268	1.0075	38.295	37.952	38.96	0.027279					50	27	3	0	0	0	0.024786	1	3230	3230		21.395	1.0802	1	910310			13952	17871	9808	9826	15261	15261					-0.0381421889237572
EQKMTAIR	8	Unmodified	_EQKMTAIR_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.77911376953125	2	488.765852	975.51715	-0.61065	-0.00029847	-2.8536	-0.0013947	-3.4643	-0.0016932	488.76415150719293	24.828	0.30116	24.613	24.463	24.764	-0.2151					10	6	2	0	0	0	0.027866	1	1130	1130		19.104	3.4617	1	75589	+		13953	21127	9809	9827	15262	15262					0.028412299113369954
EQKNQEAD	8	Unmodified	_EQKNQEAD_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29205322265625	2	481.214703	960.414853	-0.17576	-8.4576E-05	-2.115	-0.0010178	-2.2907	-0.0011023	481.2137623890303	31.459	0.46023	31.307	31.197	31.657	-0.15231					16	11	2	0	0	0	0.027866	1	2116	2116		63.306	0	1	56646			13954	8414;18525	9810	9828	15263	15263					-0.06693764626572829
EQKPIQIKSYD	11	Unmodified	_EQKPIQIKSYD_					0	0	0			REV__nc|ENSG00000001631|O00522-3|KRIT1	REV__nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.78961181640625	3	450.241753	1347.70343	0.075404	3.395E-05	3.1729	0.0014286	3.2483	0.0014625	450.24346784984533	20.431	0.63583	20.207	19.878	20.514	-0.22344					17	12	2	0	0	0	0.024734	1	479	479		43.419	13.868	1	22546	+		13955	19761	9811	9829	15264	15264					0.04348705560846611
EQKVPEHIP	9	Unmodified	_EQKVPEHIP_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7633666992188	2	538.790381	1075.56621	-0.85968	-0.00046319	-2.122	-0.0011433	-2.9817	-0.0016065	538.7900384009888	33.783	0.34951	33.783	33.662	34.011	0					13	8	2	0	0	0	0.023417	1	2486	2486		79.451	38.878	1	61249			13956	6348	9812	9830	15265	15265					0.03144841471953441
EQLAALVQLPL	11	Unmodified	_EQLAALVQLPL_					0	0	0			REV__ENSG00000158008|ENST00000374280|EXTL1	REV__ENSG00000158008|ENST00000374280|EXTL1	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8560791015625	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.602	1	90.447	89.947	90.947	-0.1552								0	0	0	1.0998	1	11087	11087		36.447	1.2947	1		+		13957	25166	9813	9831	15266	15266					0.11287116262769814
EQLAALVRPNQ	11	Unmodified	_EQLAALVRPNQ_					0	0	0			REV__ENSG00000205531|ENST00000380542|NAP1L4	REV__ENSG00000205531|ENST00000380542|NAP1L4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.2689514160156	3	413.566571	1237.67788	-0.36238	-0.00014987	-3.6585	-0.001513	-4.0208	-0.0016629	413.5647107878114	27.62	2.3554	27.701	27.136	29.492	0.081293					81	59	2	0	0	0	0.024795	1	1570	1570		52.167	22.028	1	584460	+		13958	28679	9814	9832	15267	15267					0.06855275829093443
EQLALQLAVLL	11	Unmodified	_EQLALQLAVLL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN;KLHL2-OPTN|2|fusion;KLHL2-OPTN|1|fusion;KLHL2-OPTN|3|fusion	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8722534179688	2	605.873914	1209.73327	-0.27427	-0.00016617	-2.7727	-0.0016799	-3.047	-0.0018461	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	0.94988	1	12227	12227		47.96	8.7067	1	990980			13959	3965	9815	9833	15268	15268					0.13679689296850484
EQLCDYIKL	9	Unmodified	_EQLCDYIKL_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.787841796875	2	562.78645	1123.55835	-0.47462	-0.00026711	3.4711	0.0019535	2.9964	0.0016864	562.7882250523897	30.286	0.58576	30.042	29.779	30.364	-0.24415					37	13	4	0	0	0	0.48817	1	1916	1916		60.118	0	1	851250	+		13960	20689	9816	9834	15269	15269					0.0015094616016995133
EQLEEQLRPLP	11	Unmodified	_EQLEEQLRPLP_					0	0	0		ENST00000493727.5_1_13:115047468-115051873:+|nuORF;ENST00000413731.1_1_17:16649540-16650074:-|nuORF;ENST00000480362.5_1_13:115047204-115067220:+|nuORF;nc|ENSG00000169062|Q9H1J1-2|UPF3A;ENSG00000169062|ENST00000375299|UPF3A	ENST00000493727.5_1_13:115047468-115051873:+|nuORF	ENST00000493727.5_1_13:115047468-115051873:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2449645996094	3	451.245386	1350.71433	-0.22454	-0.00010132	-0.43523	-0.0001964	-0.65977	-0.00029772	451.24518709553644	46.005	1.0401	45.744	45.383	46.423	-0.26118					97	27	5	0	0	0	0.98069	1	4422	4422		41.109	4.5811	1	11241000			13961	7896	9817	9835	15270	15270					0.05300107935113374
EQLFIPVI	8	Unmodified	_EQLFIPVI_					0	0	0		ENST00000441178.2_1_10:105006485-105006641:+|nuORF;ENST00000359429.10_1_2:210884560-210884719:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7843017578125	2	479.784036	957.553519	0.20602	9.8847E-05	0.048198	2.3125E-05	0.25422	0.00012197	479.7839161313922	96.725	1.1986	96.725	96.44	97.639	0					71	26	5	0	0	0	0.50239	1	12332	12332		85.359	0	1	2318500			13962	12738	9818	9836	15271	15271					0.07304430079705071
EQLFIPVI	8	Unmodified	_EQLFIPVI_					0	0	0		ENST00000441178.2_1_10:105006485-105006641:+|nuORF;ENST00000359429.10_1_2:210884560-210884719:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	ENST00000441178.2_1_10:105006485-105006641:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7843017578125	2	479.784036	957.553519	1.0358	0.00049695	-0.81309	-0.00039011	0.22269	0.00010684	479.7834953911984	96.749	1.2415	96.749	96.44	97.682	-3.0518E-05					79	27	5	0	0	0	0.46709	1	12268	12268		88.643	0	1	2432500			13963	12738	9818	9836	15272	15272					0.07304430079705071
EQLFKKIL	8	Unmodified	_EQLFKKIL_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7283020019531	2	509.81841	1017.62227	-0.6169	-0.00031451	0.32981	0.00016814	-0.28709	-0.00014636	509.8184208324033	54.692	0.68834	54.692	54.461	55.149	0					37	19	3	0	0	0	0.027866	1	6038	6038		31.955	0	1	513480			13964	3986	9819	9837	15273	15273					0.11416094379421793
EQLFKKIL	8	Unmodified	_EQLFKKIL_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7287902832031	2	509.81841	1017.62227	-0.20375	-0.00010388	0.044395	2.2633E-05	-0.15936	-8.1243E-05	509.8182392817561	54.853	0.59123	54.703	54.442	55.033	-0.15036					34	16	3	0	0	0	0.027866	1	6027	6027		31.955	0	1	574020			13965	3986	9819	9837	15274	15274					0.11416094379421793
EQLFKKIL	8	Unmodified	_EQLFKKIL_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7279968261719	2	509.81841	1017.62227	0.18009	9.1814E-05	-0.54683	-0.00027878	-0.36674	-0.00018697	509.81801153414693	54.482	0.62182	54.58	54.361	54.982	0.098015					36	17	3	0	0	0	0.027866	1	5938	5938		65.803	0	1	656810			13966	3986	9819	9837	15275	15275					0.11416094379421793
EQLFKKIL	8	Unmodified	_EQLFKKIL_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.81841	1017.62227	-0.22292	-0.00011365	-0.10632	-5.4204E-05	-0.32924	-0.00016785	509.8180757166179	54.792	0.36192	54.562	54.423	54.785	-0.23087	-0.051785	7.217E-05	NaN	31.955	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114950			13967	3986	9819	9837							0.11416094379421793
EQLFKKIL	8	Unmodified	_EQLFKKIL_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.81841	1017.62227	0.80298	0.00040937	-1.0876	-0.00055446	-0.28459	-0.00014509	509.8177512993828	54.736	0.32747	54.53	54.358	54.685	-0.20613	-0.083048	-0.00092835	NaN	31.955	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125280			13968	3986	9819	9837							0.11416094379421793
EQLHNYEMPV	10	Unmodified	_EQLHNYEMPV_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.5291442871094	3	420.529017	1258.56522	0.26374	0.00011091	2.8835	0.0012126	3.1472	0.0013235	420.53011460567035	18.441	1.0915	18.237	17.567	18.658	-0.20371					45	21	3	0	0	0	1.1081	1	288	288		31.634	4.587	1	283530	+		13969	23007	9820	9838	15276	15276					-0.05371740959276394
EQLIPPVQSS	10	Unmodified	_EQLIPPVQSS_					0	0	0			REV__ENSG00000147649|ENST00000336273|MTDH	REV__ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2394409179688	2	549.295496	1096.57644	-0.67562	-0.00037111	0.59503	0.00032685	-0.080587	-4.4266E-05	549.2958987861924	44.92	0.47588	44.668	44.429	44.905	-0.25252					19	11	2	0	0	0	0.03519	1	4212	4212		47.96	0	1	176970	+		13970	24574	9821	9839	15277	15277					0.03201404406536312
EQLIPPVQSS	10	Unmodified	_EQLIPPVQSS_					0	0	0			REV__ENSG00000147649|ENST00000336273|MTDH	REV__ENSG00000147649|ENST00000336273|MTDH	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.295496	1096.57644	-0.82543	-0.0004534	0.86234	0.00047368	0.036908	2.0273E-05	549.2958564232231	44.895	0.43609	44.684	44.474	44.91	-0.21109	0.0081792	0.00016869	NaN	47.96	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110240	+		13971	24574	9821	9839							0.03201404406536312
EQLKRVAN	8	Unmodified	_EQLKRVAN_					0	0	0			REV__ENSG00000184557|ENST00000330871|SOCS3	REV__ENSG00000184557|ENST00000330871|SOCS3	MSMS	OPSCC_40_ClassI_Rep-2	5	479.27685546875	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.825	1	85.675	85.175	86.175	-0.14967								0	0	0	0.82255	1	10417	10417		32.812	3.6629	1		+		13972	27681	9822	9840	15278	15278					0.06031992020314192
EQLKTKEL	8	Unmodified	_EQLKTKEL_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.78765869140625	2	494.787307	987.560061	-0.94361	-0.00046689	0.42571	0.00021063	-0.5179	-0.00025625	494.7874861374929	26.019	1.0695	25.783	25.425	26.495	-0.23603					62	28	4	0	0	0	0.5947	1	1279	1279		76.774	5.3962	1	5868400	+		13973	21127	9823	9841	15279	15279					0.06578323240421469
EQLKTKEL	8	Unmodified	_EQLKTKEL_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7874450683594	2	494.787307	987.560061	-0.17327	-8.5733E-05	-0.15362	-7.6009E-05	-0.32689	-0.00016174	494.7871661253784	25.771	0.8621	25.6	25.288	26.15	-0.17078					57	23	4	0	0	0	0.77775	1	1235	1235		60.972	2.19	1	4757700	+		13974	21127	9823	9841	15280	15280					0.06578323240421469
EQLKTKEL	8	Unmodified	_EQLKTKEL_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.787109375	2	494.787307	987.560061	-1.0018	-0.00049569	0.29356	0.00014525	-0.70828	-0.00035045	494.7874056551333	25.858	1.2065	25.694	25.373	26.579	-0.16342					62	32	4	0	0	0	0.89627	1	1245	1245		51.335	1.8939	1	5031700	+		13975	21127	9823	9841	15281	15281					0.06578323240421469
EQLLALYVA	9	Unmodified	_EQLLALYVA_					0	0	0		nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.727783203125	2	510.292225	1018.5699	-0.20391	-0.00010405	-4.2829	-0.0021855	-4.4868	-0.0022896	510.291733110022	55.36	0.63389	55.21	55	55.634	-0.15036					36	17	3	0	0	0	0.024021	1	6051	6051		49.442	0	1	399450			13976	10312	9824	9842	15282	15282					0.06135511245804537
EQLLLGLNYL	10	Unmodified	_EQLLLGLNYL_					0	0	0			REV__ENST00000551915.5_1_12:83081308-83379891:+|nuORF	REV__ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.3346557617188	2	588.337164	1174.65977	-0.43609	-0.00025657	-2.5151	-0.0014798	-2.9512	-0.0017363	588.3356239375158	106.88	0.67963	106.75	106.39	107.07	-0.1238					53	22	4	0	0	0	1.1266	1	13280	13280		29.17	2.1227	1	450350	+		13977	27237	9825	9843	15283	15283					0.07943140854376907
EQLLPVVV	8	Unmodified	_EQLLPVVV_					0	0	0			REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.261474609375	2	448.776211	895.537869	0.76738	0.00034438	-4.0656	-0.0018246	-3.2982	-0.0014802	448.77426199974315	40.973	0.50195	40.849	40.653	41.155	-0.12317					24	13	3	0	0	0	0.027866	1	3677	3677		14.664	0	1	530380	+		13978	30657	9826	9844	15284	15284					0.08592143562668753
EQLLQETET	9	Unmodified	_EQLLQETET_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.810791015625	2	545.766768	1089.51898	-0.11192	-6.1085E-05	-1.9368	-0.001057	-2.0487	-0.0011181	545.7657447036038	69.714	0.78487	69.463	69.115	69.9	-0.25063					28	18	2	0	0	0	0.024466	1	8163	8163		31.53	7.0106	1	160290	+		13979	23462	9827	9845	15285	15285					-0.022194825897031478
EQLLRLFV	8	Unmodified	_EQLLRLFV_					0	0	0		ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.305908203125	2	509.30821	1016.60187	-0.42572	-0.00021683	-3.8904	-0.0019814	-4.3162	-0.0021983	509.30608017634603	91.974	1.4257	91.851	91.414	92.84	-0.12241					104	33	5	0	0	0	1.0009	1	11284	11284		37.159	5.2042	1	3160300			13980	17133	9828	9846	15286	15286					0.09422923719614573
EQLLYAKKL	9	Unmodified	_EQLLYAKKL_					0	0	0		ENST00000602287.5_1_10:104486384-104488287:+|nuORF;ENSG00000156398|ENST00000369893|SFXN2	ENST00000602287.5_1_10:104486384-104488287:+|nuORF	ENST00000602287.5_1_10:104486384-104488287:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.3326416015625	2	553.334424	1104.6543	0.24251	0.00013419	-3.8038	-0.0021048	-3.5613	-0.0019706	553.3321684369349	95.389	1.2262	95.393	95.009	96.235	0.0041199					91	28	4	0	0	0	0.80003	1	12083	12083		39.253	1.4413	1	4195000			13981	6525	9829	9847	15287	15287					0.10615462062560255
EQLLYAKKL	9	Unmodified	_EQLLYAKKL_					0	0	0		ENST00000602287.5_1_10:104486384-104488287:+|nuORF;ENSG00000156398|ENST00000369893|SFXN2	ENST00000602287.5_1_10:104486384-104488287:+|nuORF	ENST00000602287.5_1_10:104486384-104488287:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.332275390625	2	553.334424	1104.6543	0.59374	0.00032854	-4.2368	-0.0023444	-3.6431	-0.0020159	553.3319086030377	95.481	1.1629	95.358	94.985	96.148	-0.12251					95	26	5	0	0	0	0.84115	1	11776	11776		36.447	6.129	1	4038100			13982	6525	9829	9847	15288	15288					0.10615462062560255
EQLPPSEGHG	10	Unmodified	_EQLPPSEGHG_					0	0	0		ENST00000449259.1_1_2:65131502-65132238:-|nuORF	ENST00000449259.1_1_2:65131502-65132238:-|nuORF	ENST00000449259.1_1_2:65131502-65132238:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.757080078125	2	525.74617	1049.47779	-0.3835	-0.00020163	1.3688	0.00071963	0.98527	0.000518	525.7462232211572	34.725	0.68723	34.518	34.242	34.93	-0.20696					32	16	3	0	0	0	0.03519	1	2584	2584		20.947	6.8098	1	379810			13983	14497	9830	9848	15289	15289					-0.04497198838521399
EQLQMVHGQG	10	Unmodified	_EQLQMVHGQG_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK;ENST00000511124.1_1_4:56304552-56315592:-|nuORF	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.8081665039062	2	563.769123	1125.52369	-0.53617	-0.00030227	-3.1179	-0.0017578	-3.6541	-0.00206	563.7671286888028	68.539	0.7601	68.539	68.217	68.977	0					41	19	3	0	0	0	0.03519	1	8192	8192		30.318	0	1	1117000			13984	4835	9831	9849	15290	15290					-0.034048769279252156
EQLQYYDV	8	Unmodified	_EQLQYYDV_					0	0	0		ENST00000541460.1_1_12:110173555-110179925:-|nuORF;ENST00000541723.5_1_12:110173555-110211135:-|nuORF;ENST00000536474.1_1_12:110173555-110173708:-|nuORF	ENST00000541460.1_1_12:110173555-110179925:-|nuORF	ENST00000541460.1_1_12:110173555-110179925:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.8187255859375	2	529.245472	1056.47639	-0.60787	-0.00032171	1.7297	0.00091542	1.1218	0.0005937	529.2463182822368	69.862	0.9126	69.595	69.247	70.159	-0.26725					48	21	3	0	0	0	0.027866	1	8174	8174		23.042	0	1	543950			13985	16361	9832	9850	15291	15291					-0.04958832927286494
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3545532226562	2	611.356754	1220.69895	-2.5947	-0.0015863	1.5549	0.00095059	-1.0398	-0.0006357	611.3574819188858	91.613	1.3478	91.464	90.481	91.829	-0.1487					73	31	4	0	0	0	0.56934	5	11235	11211;11223;11235;11246;11259		54.776	13.998	1	1874000	+		13986	25566	9833	9851	15292;15293;15294;15295;15296	15294					0.09743285928584555
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3567504882812	2	611.356754	1220.69895	0.14541	8.89E-05	-1.0358	-0.00063326	-0.89041	-0.00054436	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	0.89441	1	11709	11709		32.812	0	1	13233000	+		13987	25566	9833	9851	15297	15297					0.09743285928584555
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MSMS	OPSCC_40_ClassI_Rep-2	5	611.3511962890625	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.495	1	91.372	90.872	91.872	-0.12341								0	0	0	0.55222	1	11231	11231		45.972	6.7194	1		+		13988	25566	9833	9851	15298	15298					0.09743285928584555
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MSMS	OPSCC_40_ClassI_Rep-2	5	611.3533935546875	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.574	1	91.45	90.95	91.95	-0.12341								0	0	0	0.21285	1	11242	11242		74.255	19.479	1		+		13989	25566	9833	9851	15299	15299					0.09743285928584555
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MSMS	OPSCC_40_ClassI_Rep-2	5	611.3546142578125	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.66	1	91.536	91.036	92.036	-0.12341								0	0	0	0.55222	1	11254	11254		45.972	11.8	1		+		13990	25566	9833	9851	15300	15300					0.09743285928584555
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MSMS	OPSCC_40_ClassI_Rep-2	5	611.355712890625	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.747	1	91.624	91.124	92.124	-0.12341								0	0	0	0.64206	1	11266	11266		32.812	0	1		+		13991	25566	9833	9851	15301	15301					0.09743285928584555
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.35009765625	2	611.356754	1220.69895	-0.19635	-0.00012004	-1.1472	-0.00070135	-1.3436	-0.00082139	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	0.70156	3	11212	11212;11234;11271		45.972	9.5255	1	5237500	+		13992	25566	9833	9851	15302;15303;15304	15302					0.09743285928584555
EQLRLQEL	8	Unmodified	_EQLRLQEL_					0	0	0		nc|ENSG00000135083|Q8IV13-2|CCNJL;ENST00000377503.6_1_5:159686777-159766528:-|nuORF	nc|ENSG00000135083|Q8IV13-2|CCNJL	nc|ENSG00000135083|Q8IV13-2|CCNJL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7894287109375	2	514.790381	1027.56621	-0.33345	-0.00017165	-0.060019	-3.0897E-05	-0.39346	-0.00020255	514.7901584446196	61.547	0.90026	61.547	61.216	62.117	0					55	23	3	0	0	0	0.67154	1	7149	7149		69.628	5.4204	1	17470000			13993	13208	9834	9852	15305	15305					0.05352841471949432
EQLRLVKLPW	10	Unmodified	_EQLRLVKLPW_					0	0	0			REV__nc|ENSG00000124789|P49790-3|NUP153	REV__nc|ENSG00000124789|P49790-3|NUP153	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.384765625	2	641.387522	1280.76049	0.39618	0.00025411	-4.4258	-0.0028386	-4.0296	-0.0025845	641.3844593600777	101.4	0.64845	101.39	101.11	101.75	-0.0054474					45	14	4	0	0	0	1.1307	1	12910	12910		26.693	2.1737	1	972200	+		13994	36632	9835	9853	15306	15306					0.13134217627884937
EQLRLVKLPW	10	Unmodified	_EQLRLVKLPW_					0	0	0			REV__nc|ENSG00000124789|P49790-3|NUP153	REV__nc|ENSG00000124789|P49790-3|NUP153	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.384765625	2	641.387522	1280.76049	-1.2106	-0.00077648	-3.147	-0.0020184	-4.3576	-0.0027949	641.3853345182382	101.41	0.9041	101.28	100.86	101.76	-0.13157					55	19	4	0	0	0	1.1197	1	12593	12593		20.947	0.91646	1	899150	+		13995	36632	9835	9853	15307	15307					0.13134217627884937
EQLRVKLV	8	Unmodified	_EQLRVKLV_					0	0	0			REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.263671875	2	492.813659	983.612765	-0.65156	-0.0003211	2.3634	0.0011647	1.7118	0.00084362	492.8139813882846	39.795	0.64761	39.645	39.357	40.004	-0.1497					29	16	3	0	0	0	0.027866	1	3434	3434		31.955	7.7521	1	270380	+		13996	20337	9836	9854	15308	15308					0.12030326093895383
EQLSRQHEA	9	Unmodified	_EQLSRQHEA_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.P800Lfs*30|1|0.21|ENSG00000068024|chr2:239087589-239087589|G/-|frameshift_variant;ENST00000496347.1_1_2:240108838-240158334:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4	ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2394409179688	2	549.270344	1096.52613	-0.72394	-0.00039764	3.999	0.0021966	3.2751	0.0017989	549.2724804811129	44.909	0.31842	44.656	44.429	44.748	-0.25252					16	7	3	0	0	0	0.024389	1	4212	4212		51.193	15.574	1	116220			13997	1374;14726	9837	9855	15309	15309					-0.018267051986185834
EQLSRQHEA	9	Unmodified	_EQLSRQHEA_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.P800Lfs*30|1|0.21|ENSG00000068024|chr2:239087589-239087589|G/-|frameshift_variant;ENST00000496347.1_1_2:240108838-240158334:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4	ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.270344	1096.52613	-0.8632	-0.00047413	3.96	0.0021751	3.0968	0.001701	549.2723690104051	44.914	0.43609	44.703	44.474	44.91	-0.21109	0.023246	-1.7959E-05	NaN	51.193	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128060			13998	1374;14726	9837	9855							-0.018267051986185834
EQLSVPKNEP	10	Unmodified	_EQLSVPKNEP_					0	0	0			REV__ENST00000517342.1_1_8:57389388-57389772:-|nuORF	REV__ENST00000517342.1_1_8:57389388-57389772:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.33154296875	2	570.798403	1139.58225	-0.84967	-0.00048499	-1.7689	-0.0010097	-2.6185	-0.0014947	570.7974617803002	64.629	1.1916	64.366	63.719	64.911	-0.2626					66	31	3	0	0	0	0.03519	1	7512	7512		23.523	0	1	363630	+		13999	34213	9838	9856	15310	15310					0.018045029182076178
EQLSVPKNEP	10	Unmodified	_EQLSVPKNEP_					0	0	0			REV__ENST00000517342.1_1_8:57389388-57389772:-|nuORF	REV__ENST00000517342.1_1_8:57389388-57389772:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.3321533203125	2	570.798403	1139.58225	-0.40105	-0.00022892	-2.8989	-0.0016547	-3.2999	-0.0018836	571.2981662522436	64.329	0.88826	64.375	64.011	64.899	0.045502					47	23	3	0	0	0	0.03519	1	7436	7436		45.972	3.108	1	337470	+		14000	34213	9838	9856	15311	15311					0.018045029182076178
EQLTKLLPK	9	Unmodified	_EQLTKLLPK_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8010864257812	2	535.334424	1068.6543	-0.57091	-0.00030563	-0.67832	-0.00036313	-1.2492	-0.00066876	535.3344178364318	41.201	0.38826	41.224	41.005	41.394	0.023006					14	10	2	0	0	0	0.024374	1	3660	3660		40.778	0	1	126990	+		14001	25290	9839	9857	15312	15312					0.12271462062540195
EQLVSTPPPLP	11	Unmodified	_EQLVSTPPPLP_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	590.2890014648438	2	589.326796	1176.63904	-0.81677	-0.00048134	-3.8604	-0.002275	-4.6772	-0.0027564	589.3250826051263	86.487	0.81172	86.487	86.214	87.026	0					20	18	2	0	0	0	0.024787	1	10859	10859		58.23	20.418	1	48130	+		14002	25650	9840	9858	15313	15313					0.0577855047470166
EQMERLVRE	9	Unmodified	_EQMERLVRE_					0	0	0		nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;ENST00000512858.1_1_4:88986866-88996843:+|nuORF	nc|ENSG00000118762|Q13563-5|PKD2	nc|ENSG00000118762|Q13563-5|PKD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.3034057617188	2	595.303329	1188.59211	-0.89278	-0.00053148	0.57284	0.00034101	-0.31994	-0.00019046	595.3036846381788	41.192	1.047	40.964	40.69	41.737	-0.2278					72	26	5	0	0	0	0.67687	1	3616	3616		47.657	0	1	6187600			14003	3703	9841	9859	15314	15314					0.005353676519462169
EQMLLLMAN	9	Unmodified	_EQMLLLMAN_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.2906494140625	2	531.769745	1061.52494	-0.96983	-0.00051572	0.57493	0.00030573	-0.39489	-0.00020999	532.2703544225606	54.909	0.67657	55.007	54.807	55.484	0.098015					23	18	2	0	0	0	0.024457	1	5969	5969		37.159	16.212	1	240270			14004	743	9842	9860	15315	15315					-0.0033637888336670585
EQMNVDSFLA	10	Unmodified	_EQMNVDSFLA_					0	0	0			REV__nc|ENSG00000067066|P23497|SP100	REV__nc|ENSG00000067066|P23497|SP100	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.2435302734375	2	577.263339	1152.51212	-0.28976	-0.00016727	2.2645	0.0013072	1.9747	0.0011399	577.2647628472864	65.539	0.37337	65.298	65.126	65.5	-0.24145					11	8	2	0	0	0	0.03519	1	7473	7473		28.081	0	1	86055	+		14005	36464	9843	9861	15316	15316					-0.05803118741914659
EQNFVKVSH	9	Unmodified	_EQNFVKVSH_					0	0	0			REV__nc|ENSG00000109654|Q9C040|TRIM2	REV__nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3212890625	2	544.28018	1086.54581	1.4472	0.0007877	-0.32828	-0.00017867	1.119	0.00060903	544.2794606471801	24.377	0.21369	24.197	24.072	24.285	-0.18089					8	4	2	0	0	0	0.024506	1	1029	1029		10.866	0	1	34847	+		14006	21804	9844	9862	15317	15317					0.005996708121529082
EQPFPLMPQ	9	Unmodified	_EQPFPLMPQ_					0	0	0			REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3316650390625	2	543.76806	1085.52157	-0.93764	-0.00050986	-3.2227	-0.0017524	-4.1604	-0.0022623	543.7660356722486	44.943	0.59144	44.987	44.688	45.279	0.043877					42	16	4	0	0	0	0.024495	1	4237	4237		34.173	0	1	931350	+		14007	34348	9845	9863	15318	15318					-0.017773056657460984
EQPLERRYQ	9	Unmodified	_EQPLERRYQ_					0	0	0		ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.8790283203125	3	406.879038	1217.61528	1.3745	0.00055926	-1.082	-0.00044025	0.29251	0.00011902	406.8785851414845	19.621	1.0542	19.621	19.366	20.42	0					59	21	4	0	0	0	0.64897	1	444	444		49.536	9.6629	1	1239200			14008	9746	9846	9864	15319	15319					0.015181297608933164
EQPLERRYQ	9	Unmodified	_EQPLERRYQ_					0	0	0		ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.8792419433594	3	406.879038	1217.61528	0.25194	0.00010251	0.13398	5.4512E-05	0.38592	0.00015702	406.8790741365247	19.918	1.2902	19.813	19.509	20.799	-0.10477					72	26	4	0	0	0	0.67244	1	464	464		47.96	0.73184	1	1107600			14009	9746	9846	9864	15320	15320					0.015181297608933164
EQPLLTTWTL	10	Unmodified	_EQPLLTTWTL_					0	0	0			REV__ENST00000578943.1_1_17:27935867-27936402:+|nuORF	REV__ENST00000578943.1_1_17:27935867-27936402:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.21234130859375	3	401.22029	1200.63904	0.96534	0.00038731	-3.6802	-0.0014766	-2.7149	-0.0010893	401.21859713481314	36.755	0.68293	36.546	36.161	36.844	-0.2092					21	16	2	0	0	0	0.03519	1	2862	2862		24.232	17.572	1	153640	+		14010	35497	9847	9865	15321	15321					0.046745504747150335
EQPLSPGHKL	10	Unmodified	_EQPLSPGHKL_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3033447265625	2	553.303655	1104.59276	-0.91254	-0.00050491	0.2236	0.00012372	-0.68894	-0.00038119	553.3038108038968	36.272	0.93672	36.272	36.029	36.966	0					95	25	6	0	0	0	0.48123	1	2877	2877		90.37	5.209	1	4363500	+		14011	21788	9848	9866	15322	15322					0.04464530363270569
EQPLSPGHKL	10	Unmodified	_EQPLSPGHKL_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.3032836914062	2	553.303655	1104.59276	-1.3932	-0.00077087	0.69247	0.00038314	-0.70074	-0.00038772	553.3040865252328	36.13	0.97943	36.087	35.83	36.81	-0.042454					83	26	5	0	0	0	0.94316	1	2837	2837		51.193	0	1	5227500	+		14012	21788	9848	9866	15323	15323					0.04464530363270569
EQPRMCPR	8	Unmodified	_EQPRMCPR_					0	0	0		ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	2	508.741854	1015.46915	-0.88598	-0.00045074	0.99007	0.00050369	0.10409	5.2955E-05	508.7422803953966	25.553	2.0701	25.553	24.964	27.034	0					112	49	4	0	0	0	0.027866	1	1295	1295		44.117	0	1	731690			14013	10661	9849	9867	15324	15324					-0.037961672803476176
EQQPLNLGQFD	11	Unmodified	_EQQPLNLGQFD_					0	0	0		ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.24017333984375	3	430.210453	1287.60953	0.046491	2.0001E-05	-0.48966	-0.00021066	-0.44317	-0.00019066	430.21028268364466	31.314	0.45068	31.161	30.928	31.379	-0.15231					20	11	2	0	0	0	0.024742	1	2076	2076		45.908	5.8499	1	234860			14014	11083	9850	9868	15325	15325					-0.02277013541447559
EQQPLNLGQFD	11	Unmodified	_EQQPLNLGQFD_					0	0	0		ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	430.210453	1287.60953	0.15477	6.6583E-05	-0.072822	-3.1329E-05	0.081946	3.5254E-05	430.21045950605156	31.407	0.45437	31.166	30.915	31.369	-0.24109	0.0011952	0.000219	NaN	45.908	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259350			14015	11083	9850	9868							-0.02277013541447559
EQQPLNLGQFD	11	Unmodified	_EQQPLNLGQFD_					0	0	0		ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	430.210453	1287.60953	-0.054452	-2.3426E-05	-0.32437	-0.00013955	-0.37882	-0.00016297	430.21052922425247	31.351	0.37641	31.166	30.945	31.321	-0.18503	0.0018295	-0.00010565	NaN	45.908	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196270			14016	11083	9850	9868							-0.02277013541447559
EQQRAELR	8	Unmodified	_EQQRAELR_					0	0	0			REV__ENSG00000186185|ENST00000593135|KIF18B	REV__ENSG00000186185|ENST00000593135|KIF18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3115234375	2	515.275429	1028.53631	0.52867	0.00027241	3.4026	0.0017533	3.9313	0.0020257	515.2774762338233	20.126	0.14643	19.903	19.779	19.926	-0.22344					4	2	2	0	0	0	0.027866	1	483	483		79.451	8.1553	1	32425	+		14017	27831	9851	9869	15326	15326					0.02317902526601756
EQQRWRRQQW	10	Unmodified	_EQQRWRRQQW_					0	0	0			REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF	REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.30206298828125	3	500.923752	1499.74943	-0.54641	-0.00027371	-1.9153	-0.00095944	-2.4617	-0.0012331	501.2568747648603	32.809	0.56578	32.809	32.569	33.135	0					21	14	2	0	0	0	0.03519	1	2305	2305		10.104	0	1	235000	+		14018	32078	9852	9870	15327	15327					0.019542083063015525
EQQVKNIL	8	Unmodified	_EQQVKNIL_					0	0	0		nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7715759277344	2	486.279649	970.544745	-0.20938	-0.00010182	0.2875	0.00013981	0.078116	3.7986E-05	486.27901162480794	56.765	0.50191	56.597	56.284	56.786	-0.1672					20	12	2	0	0	0	0.027866	1	6181	6181		29.15	0	1	455890			14019	1053	9853	9871	15328	15328					0.05829456443234449
EQRLRRQRAL	10	Unmodified	_EQRLRRQRAL_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.6009521484375	3	442.600609	1324.78	-0.025854	-1.1443E-05	1.0031	0.00044396	0.97722	0.00043252	442.60099916555686	102.47	0.68022	102.34	102.04	102.72	-0.12666					29	15	2	0	0	0	1.1195	1	12726	12726		20.837	0.80668	1	526640	+		14020	23192	9854	9872	15329	15329					0.13059986691359882
EQRNAGLAW	9	Unmodified	_EQRNAGLAW_					0	0	0		ENSG00000112309|ENST00000230053|B3GAT2	ENSG00000112309|ENST00000230053|B3GAT2	ENSG00000112309|ENST00000230053|B3GAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3031005859375	2	522.764697	1043.51484	-0.61132	-0.00031957	-0.23495	-0.00012282	-0.84627	-0.0004424	522.7639175362041	29.738	0.42427	29.566	29.447	29.872	-0.17258					14	9	2	0	0	0	0.02435	1	1877	1877		34.173	0	1	79275			14021	3199	9855	9873	15330	15330					-0.005174825020958451
EQRPKQVT	8	Unmodified	_EQRPKQVT_					0	0	0			REV__ENST00000428623.5_1_2:145277196-145277833:+|nuORF	REV__ENST00000428623.5_1_2:145277196-145277833:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2596130371094	2	493.274898	984.535243	-0.34327	-0.00016933	1.7272	0.00085201	1.384	0.00068268	493.27714556372047	83.214	0.25587	83.214	83.095	83.351	0					7	5	2	0	0	0	0.027866	1	10398	10398		47.916	0	1	76628	+		14022	32292	9856	9874	15331	15331					0.04235688157723416
EQRQKARA	8	Unmodified	_EQRQKARA_					0	0	0			REV__ENSG00000267909|ENST00000599174|CCDC177	REV__ENSG00000267909|ENST00000599174|CCDC177	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7503967285156	2	493.778139	985.541725	-0.223	-0.00011011	1.2633	0.00062379	1.0403	0.00051368	493.77940647902886	45.553	0.4455	45.597	45.377	45.822	0.043877					29	12	3	0	0	0	0.027866	1	4367	4367		25.45	1.2474	1	1066200	+		14023	29150	9857	9875	15332	15332					0.04837626109087978
EQSCEYETRLP	11	Unmodified	_EQSCEYETRLP_					0	0	0		ENSG00000167840|ENST00000250076|ZNF232;ZNF232|p.G173Efs*32|1|0.25|ENSG00000167840|chr17:5109033-5109034|-/AGTGATAAACAGCTGGGAGAAAGATACTCTTT|frameshift_variant;ENST00000574735.1_1_17:5012529-5015337:-|nuORF;nc|ENSG00000167840|Q9UNY5-2|ZNF232	ENSG00000167840|ENST00000250076|ZNF232	ENSG00000167840|ENST00000250076|ZNF232	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.2455139160156	3	452.20297	1353.58708	0.059889	2.7082E-05	-3.3284	-0.0015051	-3.2685	-0.001478	452.53560268000126	45.506	0.3426	45.407	45.323	45.666	-0.099445					12	9	2	0	0	0	0.024805	1	4350	4350		14.779	0	1	130520			14024	7742	9858	9876	15333	15333					-0.07556981001380336
EQSDGEEDFY	10	Unmodified	_EQSDGEEDFY_					0	0	0		nc|ENSG00000125520|Q9NR83-4|SLC2A4RG;ENST00000493772.5_1_20:62372637-62374340:+|nuORF;nc|ENSG00000125520|Q9NR83-3|SLC2A4RG;ENSG00000125520|ENST00000266077|SLC2A4RG	nc|ENSG00000125520|Q9NR83-4|SLC2A4RG	nc|ENSG00000125520|Q9NR83-4|SLC2A4RG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	609.7236328125	2	609.725298	1217.43604	-1.4495	-0.00088382	-1.1901	-0.00072563	-2.6396	-0.0016095	609.72443130093	30.76	0.58823	30.516	30.284	30.872	-0.24415					34	13	3	0	0	0	0.50517	2	1987	1987;1998		87.696	35.335	1	1314400			14025	4116	9859	9877	15334;15335	15334					-0.16397844108360005
EQSDGEEDFY	10	Unmodified	_EQSDGEEDFY_					0	0	0		nc|ENSG00000125520|Q9NR83-4|SLC2A4RG;ENST00000493772.5_1_20:62372637-62374340:+|nuORF;nc|ENSG00000125520|Q9NR83-3|SLC2A4RG;ENSG00000125520|ENST00000266077|SLC2A4RG	nc|ENSG00000125520|Q9NR83-4|SLC2A4RG	nc|ENSG00000125520|Q9NR83-4|SLC2A4RG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	609.7234497070312	2	609.725298	1217.43604	-0.91909	-0.00056039	-2.1593	-0.0013166	-3.0784	-0.001877	609.723964304232	30.591	0.62622	30.413	30.164	30.791	-0.17817					42	14	4	0	0	0	0.59716	1	1960	1960		77.318	5.9397	1	1269700			14026	4116	9859	9877	15336	15336					-0.16397844108360005
EQSGIKRQY	9	Unmodified	_EQSGIKRQY_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.8086547851562	2	554.790912	1107.56727	-0.010496	-5.8232E-06	-4.3799	-0.0024299	-4.3904	-0.0024357	554.7878781551956	45.909	0.21764	45.812	45.706	45.923	-0.096653					7	5	2	0	0	0	0.024323	1	4381	4381		35.618	0	1	239000	+		14027	23131	9860	9878	15337	15337					0.017790558408705692
EQSLQTVQD	9	Unmodified	_EQSLQTVQD_					0	0	0			REV__ENSG00000083535|ENST00000326291|PIBF1	REV__ENSG00000083535|ENST00000326291|PIBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3004150390625	2	524.251286	1046.48802	-0.59733	-0.00031315	0.6819	0.00035749	0.084574	4.4338E-05	524.2515751004452	51.766	1.0055	51.766	51.466	52.472	0					50	24	3	0	0	0	0.022657	1	5570	5570		110.12	16.924	1	633550	+		14028	20716	9861	9879	15338	15338					-0.03336635903929164
EQSLQTVQD	9	Unmodified	_EQSLQTVQD_					0	0	0			REV__ENSG00000083535|ENST00000326291|PIBF1	REV__ENSG00000083535|ENST00000326291|PIBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.30224609375	2	524.251286	1046.48802	-0.63922	-0.00033511	0.60918	0.00031936	-0.030034	-1.5745E-05	524.2516154752326	51.909	0.88456	51.762	51.441	52.326	-0.14735					43	24	2	0	0	0	0.023635	1	5573	5573		87.754	10.437	1	852680	+		14029	20716	9861	9879	15339	15339					-0.03336635903929164
EQSLRRFQ	8	Unmodified	_EQSLRRFQ_					0	0	0			REV__IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	REV__IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2559814453125	2	532.285797	1062.55704	-0.70892	-0.00037735	-3.4729	-0.0018486	-4.1818	-0.0022259	532.2838431121278	41.247	0.54771	41.02	40.767	41.315	-0.2278					32	13	3	0	0	0	0.027866	1	3593	3593		31.955	0	1	270460	+		14030	23264	9862	9880	15340	15340					0.02826492906274325
EQSNPLIDN	9	Unmodified	_EQSNPLIDN_					0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8087768554688	2	515.246003	1028.47745	-0.089303	-4.6013E-05	2.0852	0.0010744	1.9959	0.0010284	515.2467947967232	67.849	0.64111	67.56	67.069	67.71	-0.28834					21	15	2	0	0	0	0.023274	1	8063	8063		77.318	24.229	1	84175	+		14031	20607	9863	9881	15341	15341					-0.035646185583800616
EQSPGQLVY	9	Unmodified	_EQSPGQLVY_					0	0	0			REV__nc|ENSG00000171984|Q8IYI0-2|SHLD1	REV__nc|ENSG00000171984|Q8IYI0-2|SHLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.77117919921875	2	510.753464	1019.49238	-0.58023	-0.00029635	-2.3881	-0.0012197	-2.9683	-0.0015161	510.7524521969568	84.592	0.37286	84.618	84.416	84.788	0.026115					11	8	2	0	0	0	0.024436	1	10499	10499		30.504	0	1	55945	+		14032	26623	9864	9882	15342	15342					-0.016591266903787982
EQSPLGAHLS	10	Unmodified	_EQSPLGAHLS_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.821533203125	2	519.764363	1037.51417	0.21869	0.00011367	-0.74073	-0.00038501	-0.52204	-0.00027134	519.7634444299941	82.113	0.81114	81.884	81.353	82.165	-0.2289					29	18	2	0	0	0	0.03519	1	9838	9838		36.447	10.997	1	174450	+		14033	27463	9865	9883	15343	15343					-0.0030832194179311045
EQSTSTQV	8	Unmodified	_EQSTSTQV_					0	0	0			REV__ENST00000454309.6_1_3:192126033-192126612:-|nuORF	REV__ENST00000454309.6_1_3:192126033-192126612:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.7661437988281	2	440.206347	878.39814	-1.0057	-0.0004427	1.5526	0.00068348	0.54696	0.00024077	440.2069165593504	37.887	0.80874	37.666	37.15	37.959	-0.22149					31	21	2	0	0	0	0.027866	1	3015	3015		25.574	0	1	290600	+		14034	32758	9866	9884	15344	15344					-0.04592265512519589
EQTAGKKKP	9	Unmodified	_EQTAGKKKP_					0	0	0		ENSG00000176393|ENST00000295640|RNPEP;ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENST00000479726.5_1_1:201952590-201965289:+|nuORF	ENSG00000176393|ENST00000295640|RNPEP	ENSG00000176393|ENST00000295640|RNPEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7850341796875	2	493.785099	985.555644	-1.0846	-0.00053554	0.31091	0.00015352	-0.77365	-0.00038202	493.78516676701526	29.993	0.66396	30.071	29.842	30.506	0.078344					28	15	2	0	0	0	0.024397	1	1826	1826		39.253	3.6345	1	1105200			14035	8635	9867	9885	15345	15345					0.06228858817519267
EQTDMPEPF	9	Oxidation (M)	_EQTDM(Oxidation (M))PEPF_		EQTDM(1)PEPF		EQTDM(66)PEPF	0	0	1			REV__ENSG00000160888|ENST00000292433|IER2	REV__ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2261352539062	2	555.226422	1108.43829	-0.15385	-8.5421E-05	1.0887	0.00060448	0.93486	0.00051906	555.2267491585853	80.362	0.57743	80.216	79.995	80.572	-0.146					31	13	3	0	0	0	0.39228	1	9627	9627		66.429	10.925	1	474510	+		14036	25358	9868	9886	15346	15346		752			-0.11159086904262949
EQTGHAAHGTG	11	Unmodified	_EQTGHAAHGTG_					0	0	0			REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF	REV__ENST00000309890.11_1_17:3846802-3850979:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2409057617188	2	533.239044	1064.46353	-0.2285	-0.00012185	3.4942	0.0018632	3.2656	0.0017414	533.24080396962	34.218	0.94058	33.994	33.68	34.621	-0.22412					66	23	4	0	0	0	0.90172	1	2521	2521		51.528	0.1923	1	5360100	+		14037	30173	9869	9887	15347	15347					-0.06611851266825397
EQTKNPDL	8	Unmodified	_EQTKNPDL_					0	0	0		SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7718811035156	2	472.737814	943.461075	-0.018279	-8.6413E-06	0.41454	0.00019597	0.39626	0.00018733	472.7379191581996	38.738	0.45404	38.639	38.318	38.772	-0.098755					16	11	2	0	0	0	0.027866	1	3257	3257		34.173	7.4796	1	109540			14038	5345	9870	9888	15348	15348					-0.01291699724481532
EQTSKRHDS	9	Unmodified	_EQTSKRHDS_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.3109130859375	2	544.259976	1086.5054	-0.36436	-0.0001983	-3.4357	-0.0018699	-3.8001	-0.0020682	544.2577054354057	43.008	0.3255	43.039	42.865	43.191	0.030823					10	8	2	0	0	0	0.024511	1	3955	3955		25.574	0	1	103820			14039	903	9871	9889	15349	15349					-0.03439295578277779
EQTSKRHDS	9	Unmodified	_EQTSKRHDS_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	544.259976	1086.5054	-0.67386	-0.00036676	-3.5404	-0.0019269	-4.2142	-0.0022936	544.2579360947369	42.811	0.36146	42.811	42.605	42.967	0	-0.1378	0.00067858	NaN	32.812	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124280			14040	903	9871	9889							-0.03439295578277779
EQTSKRHDS	9	Unmodified	_EQTSKRHDS_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.259976	1086.5054	-0.74588	-0.00040595	-2.9038	-0.0015804	-3.6497	-0.0019864	544.2585540043821	43.101	0.32445	42.962	42.702	43.027	-0.13929	0.012986	0.0013715	NaN	32.812	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114350			14041	903	9871	9889							-0.03439295578277779
EQTSKRHDS	9	Unmodified	_EQTSKRHDS_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.259976	1086.5054	-0.54093	-0.00029441	-7.6367	-0.0041563	-8.1776	-0.0044507	544.2558672980188	43.221	0.21976	42.984	42.879	43.099	-0.23737	0.034793	-0.0037803	NaN	32.812	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118660			14042	903	9871	9889							-0.03439295578277779
EQVMPNQFI	9	Unmodified	_EQVMPNQFI_					0	0	0			REV__ENSG00000101966|ENST00000371199|XIAP	REV__ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.786376953125	2	553.270967	1104.52738	0.16874	9.336E-05	-2.3064	-0.0012761	-2.1377	-0.0011827	553.2694221426588	56.358	0.80003	56.142	55.668	56.468	-0.21607					41	20	3	0	0	0	0.024447	1	6042	6042		40.778	11.629	1	853200	+		14043	21270	9872	9890	15350	15350					-0.020702071540654288
EQVQADVW	8	Unmodified	_EQVQADVW_					0	0	0			REV__ENSG00000166143|ENST00000299174|PPP1R14D	REV__ENSG00000166143|ENST00000299174|PPP1R14D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7772521972656	2	487.732532	973.45051	-1.6509	-0.00080519	1.5546	0.00075822	-0.096313	-4.6975E-05	487.7332769336992	52.22	0.78065	51.951	51.691	52.471	-0.26904					34	20	2	0	0	0	0.027866	1	5459	5459		42.396	20.436	1	190240	+		14044	25976	9873	9891	15351	15351					-0.037276823789056834
EQVQQFTY	8	Unmodified	_EQVQQFTY_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2538452148438	2	521.745639	1041.47673	-0.34637	-0.00018072	-4.3394	-0.0022641	-4.6858	-0.0024448	521.743344945342	28.297	0.8975	28.145	27.885	28.782	-0.15195					34	21	3	0	0	0	0.027866	1	1687	1687		31.955	0	1	395390	+		14045	24140	9874	9892	15352	15352					-0.04235413207425154
EQVRAEAL	8	Unmodified	_EQVRAEAL_					0	0	0			REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2294006347656	2	458.248349	914.482145	-0.0026267	-1.2037E-06	-1.0451	-0.00047894	-1.0478	-0.00048014	458.2477889981556	29.196	0.83079	29.274	28.696	29.527	0.078344					39	20	2	0	0	0	0.027866	1	1645	1645		55.504	0	1	483690	+		14046	26253	9875	9893	15353	15353					0.021483103750369992
EQVRVGEV	8	Unmodified	_EQVRVGEV_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.229248046875	2	458.248349	914.482145	-0.98106	-0.00044957	0.3993	0.00018298	-0.58177	-0.00026659	458.2482686553556	29.428	0.86635	29.428	28.947	29.814	0					32	21	2	0	0	0	0.027866	1	1735	1735		19.997	5.8596	1	625950			14047	4824	9876	9894	15354	15354					0.021483103750597365
EQVSITRLS	9	Unmodified	_EQVSITRLS_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-3|IHO1	REV__nc|ENSG00000173421|Q8IYA8-3|IHO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2678833007812	2	516.787838	1031.56112	-0.54606	-0.0002822	-0.78323	-0.00040476	-1.3293	-0.00068696	516.7875817349551	28.304	0.67495	28.135	27.966	28.641	-0.16897					20	15	2	0	0	0	0.024374	1	1619	1619		32.812	6.1195	1	188770	+		14048	36947	9877	9895	15355	15355					0.04660537609311177
EQVVLFHA	8	Unmodified	_EQVVLFHA_					0	0	0			REV__ENST00000466855.1_1_7:150774852-150776190:-|nuORF	REV__ENST00000466855.1_1_7:150774852-150776190:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718811035156	2	471.75581	941.497067	-0.50392	-0.00023773	-3.9105	-0.0018448	-4.4144	-0.0020825	471.7539705986422	38.35	0.56202	38.35	38.199	38.761	0					22	14	2	0	0	0	0.027866	1	3262	3262		26.796	4.8362	1	311460	+		14049	25815	9878	9896	15356	15356					0.023978022430469537
EQVWVWEY	8	Unmodified	_EQVWVWEY_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.3111572265625	2	569.763832	1137.51311	-0.32677	-0.00018618	0.2044	0.00011646	-0.12237	-6.9722E-05	569.7635397528827	30.955	0.86795	30.714	30.166	31.034	-0.24109					47	20	3	0	0	0	0.027866	1	2059	2059		38.806	0	1	594670			14050	2198	9879	9897	15357	15357					-0.05014536310727635
EQVWVWEY	8	Unmodified	_EQVWVWEY_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.763832	1137.51311	-1.809	-0.0010307	3.9232	0.0022353	2.1143	0.0012046	569.7658667807549	30.548	0.37342	30.548	30.343	30.717	0	-0.027687	0.0036804	NaN	73.975	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80960			14051	2198	9879	9897							-0.05014536310727635
EQVWVWEY	8	Unmodified	_EQVWVWEY_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.763832	1137.51311	-1.6314	-0.00092951	3.5866	0.0020435	1.9552	0.001114	569.7654824789961	30.131	0.41582	30.205	30.045	30.461	0.074314	-0.37088	0.0032969	NaN	73.975	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114580			14052	2198	9879	9897							-0.05014536310727635
EQVWVWEY	8	Unmodified	_EQVWVWEY_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	569.763832	1137.51311	-0.4253	-0.00024232	0.65377	0.00037249	0.22846	0.00013017	569.7635921856393	30.829	0.78719	30.651	30.164	30.952	-0.17818	0.07454	-4.5217E-05	NaN	73.975	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378820			14053	2198	9879	9897							-0.05014536310727635
EQWGLRHPQML	11	Unmodified	_EQWGLRHPQML_					0	0	0		SPATA31A1|p.I1308M|1|0.08|ENSG00000204849|chr9:39361689-39361689|C/G|missense_variant	SPATA31A1|p.I1308M|1|0.08|ENSG00000204849|chr9:39361689-39361689|C/G|missense_variant	SPATA31A1|p.I1308M|1|0.08|ENSG00000204849|chr9:39361689-39361689|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2615051269531	3	465.571439	1393.69249	-0.21188	-9.8646E-05	1.8569	0.00086451	1.645	0.00076587	465.5722918553279	22.383	0.51932	22.308	22.082	22.602	-0.075296					23	10	3	0	0	0	0.024816	1	795	795		11.932	0	1	40699			14054	37956	9880	9898	15358	15358					0.011390247055715008
EQYIIWKV	8	Unmodified	_EQYIIWKV_					0	0	0			REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF	REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8169555664062	2	539.800217	1077.58588	-0.54455	-0.00029395	-3.6761	-0.0019843	-4.2206	-0.0022783	539.798207085257	45.999	0.41045	45.737	45.557	45.968	-0.26118					18	10	2	0	0	0	0.027866	1	4405	4405		63.306	15.649	1	350750	+		14055	33955	9881	9899	15359	15359					0.05019217482708882
EQYLLGIQEI	10	Unmodified	_EQYLLGIQEI_					0	0	0			REV__nc|ENSG00000066248|Q8N5V2-2|NGEF	REV__nc|ENSG00000066248|Q8N5V2-2|NGEF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.55108642578125	3	402.551928	1204.63395	0.65489	0.00026363	-2.4919	-0.0010031	-1.837	-0.00073948	402.55098961488204	23.403	0.81689	23.223	22.79	23.607	-0.17989					45	18	3	0	0	0	0.67616	1	916	916		68.846	10.616	1	3570000	+		14056	20331	9882	9900	15360	15360					0.039822466120767785
EQYLLGIQEI	10	Unmodified	_EQYLLGIQEI_					0	0	0			REV__nc|ENSG00000066248|Q8N5V2-2|NGEF	REV__nc|ENSG00000066248|Q8N5V2-2|NGEF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	402.551928	1204.63395	1.4397	0.00057954	-3.1639	-0.0012737	-1.7243	-0.00069411	402.5506780523661	23.38	0.80973	23.189	22.851	23.66	-0.19117	-0.0092332	-0.00045196	NaN	68.846	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3524000	+		14057	20331	9882	9900							0.039822466120767785
ERAQGAAQ	8	Unmodified	_ERAQGAAQ_					0	0	0			REV__ENST00000494302.5_1_X:153178504-153191656:-|nuORF	REV__ENST00000494302.5_1_X:153178504-153191656:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.7095642089844	2	415.709391	829.404229	-0.76263	-0.00031703	0.84191	0.00034999	0.079281	3.2958E-05	415.7097228923088	26.126	2.4926	25.963	25.457	27.95	-0.16331					138	63	4	0	0	0	0.89627	1	1271	1271		51.335	10.763	1	18466000	+		14058	33149	9883	9901	15361	15361					-0.017297024903427882
ERATRIKAL	9	Unmodified	_ERATRIKAL_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2794799804688	2	529.327465	1056.64038	-0.40178	-0.00021267	4.0558	0.0021468	3.654	0.0019342	529.3294284361748	55.821	0.50935	55.605	55.372	55.881	-0.21607					23	13	3	0	0	0	0.024344	1	6046	6046		45.972	16.802	1	321780	+		14059	20165	9884	9902	15362	15362					0.11432229354113588
ERAWRVPVIL	10	Unmodified	_ERAWRVPVIL_					0	0	0		ENST00000485732.5_1_9:139751390-139753468:+|nuORF	ENST00000485732.5_1_9:139751390-139753468:+|nuORF	ENST00000485732.5_1_9:139751390-139753468:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.87109375	2	619.87204	1237.72953	0.19629	0.00012167	-4.3445	-0.002693	-4.1482	-0.0025713	619.8690521890022	104.69	0.53136	104.69	104.4	104.93	0.00096893					43	16	4	0	0	0	1.1286	1	13419	13419		25.574	1.0549	1	199580			14060	15331	9885	9903	15363	15363					0.1201706431365892
ERCFAIKNY	9	Unmodified	_ERCFAIKNY_					0	0	0		sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.8479614257812	2	572.284408	1142.55426	0.05159	2.9524E-05	-1.1501	-0.00065816	-1.0985	-0.00062864	572.2837711415314	18.798	0.58893	18.667	18.45	19.039	-0.13147					19	11	3	0	0	0	0.024539	1	334	334		27.882	1.0861	1	47856			14061	37949	9886	9904	15364	15364					-0.011310985428735876
ERCFAIKNY	9	Unmodified	_ERCFAIKNY_					0	0	0		sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	572.284408	1142.55426	2.8912	0.0016546	-3.5151	-0.0020116	-0.62387	-0.00035703	572.282239486962	18.81	0.44221	18.873	18.698	19.14	0.063307	0.16051	-0.0016711	NaN	40.778	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55561			14062	37949	9886	9904							-0.011310985428735876
ERDAFYSY	8	Unmodified	_ERDAFYSY_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7694091796875	2	525.729989	1049.44543	-0.39283	-0.00020652	-4.2498	-0.0022342	-4.6426	-0.0024407	525.7279830749383	33.877	0.38726	33.677	33.479	33.866	-0.20019					21	9	3	0	0	0	0.027866	1	2471	2471		35.618	5.1146	1	155910			14063	2871	9887	9905	15365	15365					-0.07731986241515187
ERDASYVEGEQ	11	Unmodified	_ERDASYVEGEQ_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.1900634765625	3	428.189718	1281.54732	0.12551	5.3743E-05	0.50713	0.00021715	0.63264	0.00027089	428.18987239884336	25.06	0.77154	24.886	24.554	25.325	-0.17484					53	17	4	0	0	0	0.98625	1	1138	1138		39.873	2.365	1	2061600	+		14064	26845	9888	9906	15366	15366					-0.08218784680411773
ERDDVLVIR	9	Unmodified	_ERDDVLVIR_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.22998046875	2	557.814387	1113.61422	-0.18734	-0.0001045	1.8322	0.001022	1.6449	0.00091753	557.8154345418092	43.155	0.53971	43.042	42.815	43.355	-0.11253					26	14	4	0	0	0	0.024427	1	3938	3938		34.173	12.487	1	1055000	+		14065	27215	9889	9907	15367	15367					0.061959153919815435
EREAGKKHKVE	11	Unmodified	_EREAGKKHKVE_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.88201904296875	3	437.577359	1309.71025	0.37959	0.0001661	0.63287	0.00027693	1.0125	0.00044303	437.5780566514604	39.714	0.31034	39.484	39.313	39.623	-0.23021					12	7	2	0	0	0	0.024783	1	3363	3363		49.466	7.1278	1	104480			14066	2905	9890	9908	15368	15368					0.06778063232081877
EREIVGKF	8	Unmodified	_EREIVGKF_					0	0	0			REV__PAPPA2|p.S749I|1|0.12|ENSG00000116183|chr1:176690245-176690245|G/T|missense_variant	REV__PAPPA2|p.S749I|1|0.12|ENSG00000116183|chr1:176690245-176690245|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.27496337890625	2	489.274367	976.53418	-0.92034	-0.0004503	0.99313	0.00048591	0.072794	3.5616E-05	489.2746885333707	20.979	0.73802	20.979	20.753	21.491	0					42	14	5	0	0	0	0.96769	1	614	614		42.396	0.96952	1	319820	+		14067	37345	9891	9909	15369	15369					0.044974737888196614
EREKKAQI	8	Unmodified	_EREKKAQI_					0	0	0			REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904357910156	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.0106	1	10562	10562		35.618	5.1146	1	10557000	+		14068	19200	9892	9910	15370	15370					0.06628261191792717
EREKKAQI	8	Unmodified	_EREKKAQI_					0	0	0			REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903747558594	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0106	1	10404	10404		35.618	0	1	10074000	+		14069	19200	9892	9910	15371	15371					0.06628261191792717
EREKLDGLY	9	Unmodified	_EREKLDGLY_					0	0	0		ENSG00000117118|ENST00000375499|SDHB	ENSG00000117118|ENST00000375499|SDHB	ENSG00000117118|ENST00000375499|SDHB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7984619140625	2	561.793121	1121.57169	1.4678	0.00082462	-2.1491	-0.0012073	-0.68125	-0.00038272	562.2947626640946	16.885	0.2473	16.731	16.609	16.857	-0.15376					7	4	2	0	0	0	0.024495	1	118	118		42.396	8.2236	1	17933			14070	3609	9893	9911	15372	15372					0.0157652026375672
ERERILYQFSR	11	Unmodified	_ERERILYQFSR_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.6046447753906	3	499.603797	1495.78956	-0.55021	-0.00027489	1.8312	0.00091489	1.281	0.00064	499.6046755416096	56.182	0.77947	56.026	55.713	56.492	-0.15655					65	19	5	0	0	0	1.0411	1	6077	6077		27.554	4.1758	1	4098800			14071	4123;13785	9894	9912	15373	15373					0.06149710186195989
ERERILYQFSR	11	Unmodified	_ERERILYQFSR_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.6041259765625	3	499.603797	1495.78956	-0.88856	-0.00044393	2.2185	0.0011084	1.33	0.00066445	499.6048718582065	56.239	0.81125	56.024	55.78	56.591	-0.21551					49	20	3	0	0	0	1.0059	1	6069	6069		35.496	6.9189	1	3672300			14072	4123;13785	9894	9912	15374	15374					0.06149710186195989
ERERPLSLLQL	11	Unmodified	_ERERPLSLLQL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.9327392578125	3	451.933143	1352.7776	0.7506	0.00033922	-1.6338	-0.00073839	-0.88325	-0.00039917	451.9323062190874	96.976	2.291	96.984	95.564	97.855	0.0089111					165	52	5	0	0	0	1.0764	1	12312	12312		17.833	0	1	646190			14073	9076	9895	9913	15375	15375					0.11532093443042868
ERERPLSLLQL	11	Unmodified	_ERERPLSLLQL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9328308105469	3	451.933143	1352.7776	0.96808	0.00043751	-1.8985	-0.00085799	-0.93042	-0.00042049	451.9321669232396	97.087	2.2013	96.951	95.725	97.926	-0.1367					165	50	4	0	0	0	1.0123	2	12107	12063;12107		34.087	5.5098	1	596220			14074	9076	9895	9913	15376;15377	15377					0.11532093443042868
ERERPLSLLQL	11	Unmodified	_ERERPLSLLQL_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9328918457031	3	451.933143	1352.7776	1.0325	0.00046661	-2.0942	-0.00094645	-1.0617	-0.00047983	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0408	1	12347	12347		27.644	5.0823	1	1299700			14075	9076	9895	9913	15378	15378					0.11532093443042868
ERFEERSP	8	Unmodified	_ERFEERSP_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1;REV__ENSG00000122728|ENST00000242310|TAF1L	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2542114257812	2	525.254163	1048.49377	-1.1209	-0.00058875	1.197	0.00062875	0.076162	4.0004E-05	525.2546947779105	38.413	0.77029	38.233	37.908	38.678	-0.17929					63	21	4	0	0	0	0.87148	1	3197	3197		53.351	3.8154	1	4273000	+		14076	36762;22661	9896	9914	15379	15379					-0.02853492601616381
ERFSIYELF	9	Unmodified	_ERFSIYELF_					0	0	0			REV__ENSG00000172640|ENST00000310248|OR10AD1	REV__ENSG00000172640|ENST00000310248|OR10AD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	601.8312377929688	2	602.305864	1202.59717	-0.38931	-0.00023448	-2.5124	-0.0015132	-2.9017	-0.0017477	602.3042736449985	72.658	0.42882	72.381	72.154	72.582	-0.2769					11	9	2	0	0	0	0.024307	1	8520	8520		56.721	27.551	1	71333	+		14077	26693	9897	9915	15380	15380					0.0039799478618078865
ERGGGKHPR	9	Unmodified	_ERGGGKHPR_					0	0	0		ENST00000435805.6_1_10:43047647-43047983:-|nuORF	ENST00000435805.6_1_10:43047647-43047983:-|nuORF	ENST00000435805.6_1_10:43047647-43047983:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.26824951171875	2	497.270481	992.52641	-0.43701	-0.00021731	-3.517	-0.0017489	-3.954	-0.0019662	497.2685861030989	35.297	1.0578	35.085	34.56	35.618	-0.21246					68	26	4	0	0	0	0.70156	1	2665	2665		45.972	6.7194	1	845870			14078	14269	9898	9916	15381	15381					0.029847593118915938
ERGRALADY	9	Unmodified	_ERGRALADY_					0	0	0		chrX:152932971-152945267|270|11.77|0.62|4.26|+|1|ZNF185,ZNF185|1	chrX:152932971-152945267|270|11.77|0.62|4.26|+|1|ZNF185,ZNF185|1	chrX:152932971-152945267|270|11.77|0.62|4.26|+|1|ZNF185,ZNF185|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7695922851562	2	525.76998	1049.52541	-0.33165	-0.00017437	0.32209	0.00016934	-0.0095677	-5.0304E-06	525.7695742420977	34.074	1.1849	33.867	33.627	34.812	-0.20696					73	29	4	0	0	0	0.91321	1	2494	2494		31.53	1.0262	1	9132600			14079	443	9899	9917	15382	15382					0.0026250015230289137
ERHLRQVA	8	Unmodified	_ERHLRQVA_					0	0	0		ENSG00000256223|ENST00000248211|ZNF10;ZNF10|p.F152V|1|0.41|ENSG00000256223|chr12:133155700-133155700|T/G|missense_variant	ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7881774902344	2	504.788507	1007.56246	0.83878	0.0004234	-1.1182	-0.00056445	-0.27943	-0.00014105	504.7878016205893	19.732	0.78431	19.498	19.226	20.01	-0.23345					39	15	4	0	0	0	1.043	1	443	443		30.504	6.3009	1	678370			14080	10904	9900	9918	15383	15383					0.058982164887424915
ERIELVWLCL	10	Unmodified	_ERIELVWLCL_					0	0	0			REV__SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|48|2|anti-sense	REV__SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|48|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.23822021484375	3	425.237286	1272.69003	-0.12292	-5.227E-05	2.1976	0.00093448	2.0746	0.00088221	425.23823646959255	34.903	1.5859	34.692	33.928	35.513	-0.21044					61	39	2	0	0	0	1.0344	1	2613	2613		41.427	2.673	1	2850000	+		14081	37609	9901	9919	15384	15384					0.06459176247926735
ERIMKAQAL	9	Unmodified	_ERIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.30224609375	2	530.302601	1058.59065	-0.18329	-9.7202E-05	-0.40148	-0.0002129	-0.58477	-0.00031011	530.3022293238557	34.317	0.90017	34.093	33.803	34.703	-0.22412					49	22	4	0	0	0	0.053401	3	2510	2510;2520;2533		127.46	58.675	1	3143600			14082	677;2049;1697;13251	9902	9920	15385;15386;15387	15385					0.06369778353814581
ERIMKAQAL	9	Unmodified	_ERIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.3021240234375	2	530.302601	1058.59065	-0.62868	-0.00033339	0.03842	2.0374E-05	-0.59026	-0.00031302	530.3024027139301	34.267	1.2633	34.06	33.549	34.812	-0.20696					62	31	4	0	0	0	0.062622	3	2506	2506;2519;2532		124.08	55.293	1	3084800			14083	677;2049;1697;13251	9902	9920	15388;15389;15390	15388					0.06369778353814581
ERIMKAQAL	9	Unmodified	_ERIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3025512695312	2	530.302601	1058.59065	-0.89714	-0.00047575	0.26563	0.00014087	-0.6315	-0.00033489	530.3026010293481	34.27	1.1101	34.095	33.622	34.732	-0.17557					62	27	4	0	0	0	0.041068	3	2494	2485;2494;2506		132.76	53.307	1	3453600			14084	677;2049;1697;13251	9902	9920	15391;15392;15393	15392					0.06369778353814581
ERINTPPLTKL	11	Unmodified	_ERINTPPLTKL_					0	0	0			REV__ENST00000546455.5_1_12:47473502-47610158:+|nuORF	REV__ENST00000546455.5_1_12:47473502-47610158:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.882568359375	2	641.379894	1280.74524	1.2808	0.0008215	1.5963	0.0010238	2.8771	0.0018453	641.8817204231664	105.67	0.93253	105.67	105.32	106.25	0					54	32	3	0	0	0	1.0465	1	13581	13581		26.063	0.48933	1	169550	+		14085	34841	9903	9921	15394	15394					0.11609306040031697
ERKGCVRVS	9	Unmodified	_ERKGCVRVS_					0	0	0		ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	ENST00000531709.6_1_11:62566311-62566866:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8193359375	2	517.2822	1032.54985	-0.25664	-0.00013275	-1.6243	-0.00084022	-1.8809	-0.00097297	517.282087361514	91.594	0.86034	91.471	91.117	91.978	-0.12341					63	19	5	0	0	0	0.024418	1	11303	11303		30.318	4.7437	1	331330			14086	16267	9904	9922	15395	15395					0.03487437034209506
ERKKRLGPGGL	11	Unmodified	_ERKKRLGPGGL_					0	0	0		ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8731689453125	2	605.872571	1209.73059	0.020307	1.2303E-05	-0.796	-0.00048227	-0.77569	-0.00046997	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	1.0592	1	12294	12294		22.58	1.7425	1	1147100			14087	2671	9905	9923	15396	15396					0.13411278682565353
ERKKWMNI	8	Unmodified	_ERKKWMNI_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8006591796875	2	552.802768	1103.59098	0.70932	0.00039212	-4.4727	-0.0024725	-3.7634	-0.0020804	552.8002230231247	19.43	0.74376	19.23	18.958	19.701	-0.2001					37	14	4	0	0	0	0.87148	1	409	409		53.351	3.9099	1	964640			14088	3918	9906	9924	15397	15397					0.0433319807366388
ERKLRGVARI	10	Unmodified	_ERKLRGVARI_					0	0	0			REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	599.3800048828125	2	599.380563	1196.74657	-1.7115	-0.0010259	0.88076	0.00052791	-0.83079	-0.00049796	599.3810159995093	102.25	0.69998	102.25	101.99	102.69	0					52	15	5	0	0	0	0.83673	3	13124	13089;13099;13124		58.23	13.853	1	1093900	+		14089	26306	9907	9925	15398;15399;15400	15400					0.15606984919463684
ERKLRGVARI	10	Unmodified	_ERKLRGVARI_					0	0	0			REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.3795776367188	2	599.380563	1196.74657	-0.67183	-0.00040268	-0.25756	-0.00015437	-0.92938	-0.00055705	599.3803918245654	102.23	0.72807	102.24	101.98	102.71	0.0073471					50	16	4	0	0	0	1.0616	1	13077	13077		37.812	2.1932	1	866470	+		14090	26306	9907	9925	15401	15401					0.15606984919463684
ERKLRGVARI	10	Unmodified	_ERKLRGVARI_					0	0	0			REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	599.379638671875	2	599.380563	1196.74657	-0.68609	-0.00041123	-0.25526	-0.000153	-0.94135	-0.00056423	599.3802338408786	102.36	0.61472	102.35	102.06	102.68	-0.0054474					45	13	5	0	0	0	1.0393	1	13036	13036		40.778	5.1599	1	1236000	+		14091	26306	9907	9925	15402	15402					0.15606984919463684
ERKLRGVARI	10	Unmodified	_ERKLRGVARI_					0	0	0			REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.3776245117188	2	599.380563	1196.74657	-0.0023505	-1.4088E-06	-0.8599	-0.00051541	-0.86225	-0.00051682	599.3799609845375	102.37	0.72133	102.24	101.99	102.71	-0.12931					46	16	4	0	0	0	1.0781	2	12693	12693;12702		35.618	2.8059	1	899540	+		14092	26306	9907	9925	15403;15404	15403					0.15606984919463684
ERKLRGVARI	10	Unmodified	_ERKLRGVARI_					0	0	0			REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.3782958984375	2	599.380563	1196.74657	-0.43786	-0.00026245	-0.51716	-0.00030997	-0.95502	-0.00057242	599.3801501968157	102.33	0.59103	102.21	102	102.59	-0.12666					41	13	5	0	0	0	1.1286	1	12711	12711		25.574	2.0514	1	662760	+		14093	26306	9907	9925	15405	15405					0.15606984919463684
ERKLRGVARI	10	Unmodified	_ERKLRGVARI_					0	0	0			REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	REV__ENST00000470090.5_1_2:228190001-228205097:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.379150390625	2	599.380563	1196.74657	0.054084	3.2417E-05	-1.0311	-0.000618	-0.97698	-0.00058558	599.3798319820231	102.48	0.58797	102.31	102.05	102.64	-0.17178					47	13	5	0	0	0	1.1197	1	12709	12709		20.947	0	1	851410	+		14094	26306	9907	9925	15406	15406					0.15606984919463684
ERLFPCALV	9	Unmodified	_ERLFPCALV_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2885131835938	2	524.28642	1046.55829	-1.3974	-0.00073262	4.3449	0.002278	2.9476	0.0015454	524.2887223328601	28.554	1.0896	28.308	27.921	29.011	-0.24524					77	25	5	0	0	0	0.80003	1	1705	1705		39.253	0.23134	1	3608600	+		14095	23025	9908	9926	15407	15407					0.03686990950791369
ERLHRRETD	9	Unmodified	_ERLHRRETD_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.59283447265625	3	404.54617	1210.61668	-0.12265	-4.9618E-05	1.6004	0.00064745	1.4778	0.00059783	404.5460816452255	38.178	0.22774	37.999	37.908	38.136	-0.17929					8	6	2	0	0	0	0.024488	1	3120	3120		20.03	0	1	84551	+		14096	26893	9909	9927	15408	15408					0.019797638496584113
ERLLKPLS	8	Unmodified	_ERLLKPLS_					0	0	0		nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENSG00000167216|ENST00000683218|KATNAL2	nc|ENSG00000167216|Q8IYT4-2|KATNAL2	nc|ENSG00000167216|Q8IYT4-2|KATNAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2796936035156	2	478.300384	954.586216	0.28189	0.00013483	-0.32469	-0.0001553	-0.042794	-2.0468E-05	478.30022068141653	59.383	0.77164	59.468	58.991	59.763	0.085682					38	20	2	0	0	0	0.027866	1	6636	6636		55.504	0	1	537710			14097	7661	9910	9928	15409	15409					0.10710637202555517
ERLPSNLEASK	11	Unmodified	_ERLPSNLEASK_					0	0	0			REV__KIZ|p.S376Rfs*12|1|0.15|ENSG00000088970|chr20:21162934-21162935|-/AATTACTCATCAGT|frameshift_variant	REV__KIZ|p.S376Rfs*12|1|0.15|ENSG00000088970|chr20:21162934-21162935|-/AATTACTCATCAGT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3350830078125	2	622.335684	1242.65681	0.2866	0.00017836	1.052	0.0006547	1.3386	0.00083306	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.0429	1	13529	13529		27.047	1.4733	1	1619900	+		14098	20832	9911	9929	15410	15410					0.045192657295501704
ERMKRSVT	8	Unmodified	_ERMKRSVT_					0	0	0			REV__ENST00000474953.5_1_1:235346012-235357339:-|nuORF	REV__ENST00000474953.5_1_1:235346012-235357339:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.75823974609375	2	503.776751	1005.53895	0.61563	0.00031014	-1.2685	-0.00063903	-0.65285	-0.00032889	504.27751731445403	59.498	1.1351	59.298	58.958	60.093	-0.20016					47	30	2	0	0	0	0.027866	1	6842	6842		45.952	10.334	1	181620	+		14099	33280	9912	9930	15411	15411					0.0364003465992937
ERPLGPVL	8	Unmodified	_ERPLGPVL_					0	0	0		ENST00000266069.4_1_20:61577009-61577477:+|nuORF	ENST00000266069.4_1_20:61577009-61577477:+|nuORF	ENST00000266069.4_1_20:61577009-61577477:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.7661437988281	2	440.766178	879.517802	0.12774	5.6304E-05	-0.37026	-0.0001632	-0.24252	-0.0001069	440.76604915168593	37.318	1.9877	37.109	36.765	38.753	-0.2092					135	53	5	0	0	0	0.21344	3	2951	2951;2973;2985		138.24	18.685	1	33875000			14100	11605	9913	9931	15412;15413;15414	15412					0.07322392622711504
ERPNPFGNAII	11	Unmodified	_ERPNPFGNAII_					0	0	0			REV__nc|ENSG00000188501|Q6UWM7-2|LCTL	REV__nc|ENSG00000188501|Q6UWM7-2|LCTL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.8863830566406	3	409.887533	1226.64077	0.11489	4.709E-05	-3.4112	-0.0013982	-3.2963	-0.0013511	409.8861759658138	34.5	1.4092	34.55	34.213	35.623	0.050255					110	36	5	0	0	0	0.97516	1	2536	2536		42.338	0.91146	1	10789000	+		14101	28041	9914	9932	15415	15415					0.036516042833454776
ERPSPCNGR	9	Unmodified	_ERPSPCNGR_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3117370605469	2	508.240532	1014.46651	1.2577	0.0006392	-2.4278	-0.0012339	-1.1701	-0.00059472	508.23895785242365	63.255	0.28523	63.309	63.198	63.483	0.054104					11	7	2	0	0	0	0.024374	1	7322	7322		32.812	19.853	1	105200			14102	5790	9915	9933	15416	15416					-0.0401429941364313
ERPSTGGVIYY	11	Unmodified	_ERPSTGGVIYY_					0	0	0			REV__nc|ENSG00000138744|Q02083-2|NAAA	REV__nc|ENSG00000138744|Q02083-2|NAAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3163452148438	2	621.311677	1240.6088	-0.33526	-0.0002083	3.3014	0.0020512	2.9661	0.0018429	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.72712	1	7705	7705		62.107	0	1	26099000	+		14103	23893	9916	9934	15417	15417					-0.0018780819045787212
ERQRFPAL	8	Unmodified	_ERQRFPAL_					0	0	0			REV__ENSG00000079616|ENST00000160827|KIF22	REV__ENSG00000079616|ENST00000160827|KIF22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2946472167969	2	508.785433	1015.55631	1.1389	0.00057947	-2.4473	-0.0012452	-1.3084	-0.00066569	508.78386110590924	63.256	0.58141	63.31	62.974	63.555	0.054104					34	15	3	0	0	0	0.027866	1	7341	7341		47.916	12.715	1	1220800	+		14104	20641	9917	9935	15418	15418					0.04915698257229906
ERRDRPKA	8	Unmodified	_ERRDRPKA_					0	0	0			REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.2908935546875	2	514.291414	1026.56827	-0.35661	-0.0001834	-1.3103	-0.00067387	-1.6669	-0.00085727	514.2907393829673	66.656	0.17519	66.375	66.281	66.456	-0.28148					10	7	2	0	0	0	1.0574	1	7913	7913		3.9852	0.57522	1	1130800	+		14105	33267	9918	9936	15419	15419					0.0560531500043453
ERRDRPKA	8	Unmodified	_ERRDRPKA_					0	0	0			REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.291414	1026.56827	-0.095366	-4.9046E-05	-1.7753	-0.00091302	-1.8707	-0.00096206	514.2907868998061	66.373	0.21008	66.373	66.224	66.434	0	-0.00067356	-0.00030468	NaN	3.9852	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1066100	+		14106	33267	9918	9936							0.0560531500043453
ERRDRPKA	8	Unmodified	_ERRDRPKA_					0	0	0			REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	514.291414	1026.56827	-0.35661	-0.0001834	-1.3103	-0.00067387	-1.6669	-0.00085727	514.2907393829673	66.656	0.17519	66.375	66.281	66.456	-0.28148	0.00067356	0.00017361	NaN	3.9852	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130800	+		14107	33267	9918	9936							0.0560531500043453
ERREFERNFYF	11	Unmodified	_ERREFERNFYF_					0	0	0		ENST00000257290.9_1_4:55095294-55095372:+|nuORF	ENST00000257290.9_1_4:55095294-55095372:+|nuORF	ENST00000257290.9_1_4:55095294-55095372:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.842529296875	3	531.591668	1591.75317	-1.1898	-0.0006325	-3.8937	-0.0020698	-5.0835	-0.0027023	531.5896775758827	51.292	0.24675	51.379	51.264	51.511	0.087006					11	6	2	0	0	0	0.024856	1	5363	5363		18.531	0.69791	1	67091			14108	11404	9919	9937	15420	15420					-0.019031667104854932
ERRKIRAR	8	Unmodified	_ERRKIRAR_					0	0	0		HFE|p.H172R|1|0.28|ENSG00000010704|chr6:26091488-26091488|A/G|missense_variant	HFE|p.H172R|1|0.28|ENSG00000010704|chr6:26091488-26091488|A/G|missense_variant	HFE|p.H172R|1|0.28|ENSG00000010704|chr6:26091488-26091488|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.8146362304688	2	542.844148	1083.67374	-1.6312	-0.00088546	2.8311	0.0015369	1.2	0.0006514	542.8456874961689	29.716	0.31662	29.795	29.566	29.883	0.078344					10	7	2	0	0	0	0.027866	1	1795	1795		29.15	0	1	52456			14109	17733	9920	9938	15421	15421					0.13525275916686041
ERRKIRAR	8	Unmodified	_ERRKIRAR_					0	0	0		HFE|p.H172R|1|0.28|ENSG00000010704|chr6:26091488-26091488|A/G|missense_variant	HFE|p.H172R|1|0.28|ENSG00000010704|chr6:26091488-26091488|A/G|missense_variant	HFE|p.H172R|1|0.28|ENSG00000010704|chr6:26091488-26091488|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.844148	1083.67374	-1.8073	-0.0009811	3.0969	0.0016811	1.2896	0.00070004	542.8460386722387	29.957	0.24396	29.957	29.773	30.017	0	0.067074	0.00024291	NaN	19.997	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57830			14110	17733	9920	9938							0.13525275916686041
ERRKRLLERQF	11	Unmodified	_ERRKRLLERQF_					0	0	0			REV__ENSG00000114923|ENST00000358055|SLC4A3	REV__ENSG00000114923|ENST00000358055|SLC4A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7641296386719	3	510.970702	1529.89028	-0.6602	-0.00033734	0.29183	0.00014912	-0.36836	-0.00018822	511.30527703355403	26.025	0.28726	25.789	25.593	25.88	-0.23603					13	6	3	0	0	0	0.024816	1	1272	1272		21.78	7.6944	1	147540	+		14111	22155	9921	9939	15422	15422					0.1465278695975485
ERRKSPLQ	8	Unmodified	_ERRKSPLQ_					0	0	0		ENSG00000159110|ENST00000342136|IFNAR2	ENSG00000159110|ENST00000342136|IFNAR2	ENSG00000159110|ENST00000342136|IFNAR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2952575683594	2	507.296165	1012.57778	3.0875	0.0015663	-3.2849	-0.0016664	-0.1974	-0.00010014	507.29439199215295	17.959	0.58761	17.959	17.697	18.284	0					27	11	3	0	0	0	0.96769	1	246	246		42.396	5.237	1	281450			14112	6718	9922	9940	15423	15423					0.07199083285945562
ERRPRPCRPPK	11	Unmodified	_ERRPRPCRPPK_					0	0	0			REV__ENST00000490170.5_1_1:27674035-27676436:+|nuORF	REV__ENST00000490170.5_1_1:27674035-27676436:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7955627441406	3	464.598211	1390.7728	0.43074	0.00020012	-0.78591	-0.00036513	-0.35517	-0.00016501	464.5977058248579	55.681	0.60791	55.681	55.427	56.035	0					30	16	2	0	0	0	0.02486	1	6140	6140		8.7993	3.6569	1	493620	+		14113	33694	9923	9941	15424	15424					0.09304930819257606
ERRRSRSI	8	Unmodified	_ERRRSRSI_					0	0	0		PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B;PRPF38B|p.G324Qfs*6|1|0.35|ENSG00000134186|chr1:108699348-108699358|GGGGTTAGAAC/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.8114013671875	2	530.310138	1058.60572	-0.085274	-4.5222E-05	-3.528	-0.0018709	-3.6132	-0.0019161	530.8096698435302	61.428	0.97114	61.499	60.985	61.956	0.071129					49	25	4	0	0	0	0.94504	1	7024	7024		45.972	5.3996	1	1822800			14114	4762	9924	9942	15425	15425					0.07876406266041158
ERRVALPAD	9	Unmodified	_ERRVALPAD_					0	0	0			REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF	REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7884521484375	2	513.788173	1025.56179	-0.8679	-0.00044592	0.2983	0.00015326	-0.5696	-0.00029266	513.7882504811131	27.8	0.9779	27.8	27.471	28.449	0					60	24	3	0	0	0	0.6238	1	1581	1581		51.193	1.1682	1	2904500	+		14115	30188	9925	9943	15426	15426					0.05003377049047231
ERRVALPAD	9	Unmodified	_ERRVALPAD_					0	0	0			REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF	REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7882690429688	2	513.788173	1025.56179	-0.49902	-0.00025639	-0.032296	-1.6594E-05	-0.53132	-0.00027299	513.7880377377146	27.755	1.0585	27.742	27.391	28.449	-0.012983					62	26	3	0	0	0	0.5973	1	1565	1565		52.937	10.072	1	2847200	+		14116	30188	9925	9943	15427	15427					0.05003377049047231
ERRVALPAD	9	Unmodified	_ERRVALPAD_					0	0	0			REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF	REV__ENST00000310546.2_1_3:140770656-140784819:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7883911132812	2	513.788173	1025.56179	-1.0884	-0.00055923	0.57614	0.00029601	-0.5123	-0.00026321	513.7883511015993	27.545	0.89135	27.626	27.357	28.249	0.081293					56	22	3	0	0	0	0.56934	1	1483	1483		54.776	1.8396	1	3177700	+		14117	30188	9925	9943	15428	15428					0.05003377049047231
ERSKSKITVT	10	Unmodified	_ERSKSKITVT_					0	0	0		ENST00000469811.1_1_14:77352823-77353039:-|nuORF;ENSG00000116251|ENST00000234875|RPL22	ENST00000469811.1_1_14:77352823-77353039:-|nuORF;ENSG00000116251|ENST00000234875|RPL22	ENST00000469811.1_1_14:77352823-77353039:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.8350830078125	2	574.83532	1147.65609	0.097744	5.6187E-05	-0.1936	-0.00011129	-0.095858	-5.5102E-05	574.8352416292701	105.92	0.61894	105.8	105.44	106.06	-0.12381					63	21	4	0	0	0	1.1265	1	13174	13174		24.519	0.31644	1	351890			14118	14917;3538	9926	9944	15429	15429					0.08816471080490373
ERSQIRLR	8	Unmodified	_ERSQIRLR_					0	0	0		ENST00000310653.10_2_11:73471884-73472109:-|nuORF	ENST00000310653.10_2_11:73471884-73472109:-|nuORF	ENST00000310653.10_2_11:73471884-73472109:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.8014526367188	2	529.314889	1056.61522	-0.24398	-0.00012914	-0.58042	-0.00030722	-0.8244	-0.00043637	529.3121505752433	41.009	0.14127	41.032	40.934	41.076	0.023006					7	3	3	0	0	0	0.027866	1	3594	3594		71.877	8.5712	1	44962			14119	12067	9927	9945	15430	15430					0.0891817455153614
ERSRKIQGLL	10	Unmodified	_ERSRKIQGLL_					0	0	0		ENSG00000167641|ENST00000301242|PPP1R14A	ENSG00000167641|ENST00000301242|PPP1R14A	ENSG00000167641|ENST00000301242|PPP1R14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.58050537109375	3	400.578811	1198.7146	0.70335	0.00028175	3.5435	0.0014195	4.2469	0.0017012	400.5801374909674	110.7	0.47864	110.58	110.51	110.99	-0.12525					42	17	3	0	0	0	1.118	1	13619	13619		20.03	0.7678	1	1160800			14120	7714	9928	9946	15431	15431					0.12319572445653648
ERSVFKPF	8	Unmodified	_ERSVFKPF_					0	0	0		nc|ENSG00000144306|Q0VDG4-2|SCRN3;SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant;ENSG00000144306|ENST00000272732|SCRN3	nc|ENSG00000144306|Q0VDG4-2|SCRN3	nc|ENSG00000144306|Q0VDG4-2|SCRN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7140808105469	2	505.276909	1008.53927	0.010487	5.2986E-06	-4.4105	-0.0022285	-4.4	-0.0022232	505.274697475013	31.828	0.36078	31.591	31.336	31.697	-0.23667					13	8	2	0	0	0	0.027866	1	2125	2125		38.806	14.603	1	182770			14121	18355	9929	9947	15432	15432					0.035337776514325014
ERSVFKPF	8	Unmodified	_ERSVFKPF_					0	0	0		nc|ENSG00000144306|Q0VDG4-2|SCRN3;SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant;ENSG00000144306|ENST00000272732|SCRN3	nc|ENSG00000144306|Q0VDG4-2|SCRN3	nc|ENSG00000144306|Q0VDG4-2|SCRN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.276909	1008.53927	-0.63946	-0.0003231	-3.8006	-0.0019204	-4.44	-0.0022435	505.2746989296455	31.83	0.32978	31.672	31.489	31.819	-0.15772	0.040663	0.00020355	NaN	38.806	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153350			14122	18355	9929	9947							0.035337776514325014
ERTGFTVSERG	11	Unmodified	_ERTGFTVSERG_					0	0	0			REV__ENST00000393389.7_1_11:82905209-82905431:+|nuORF	REV__ENST00000393389.7_1_11:82905209-82905431:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	619.3701171875	2	619.809833	1237.60511	-0.18402	-0.00011406	1.7092	0.0010594	1.5252	0.00094531	619.8110253371449	100.25	0.30921	100.25	100.14	100.44	0					8	6	2	0	0	0	0.024747	1	12812	12812		30.318	0	1	82610	+		14123	31642	9930	9948	15433	15433					-0.004184779643310321
ERTKKIPTV	9	Unmodified	_ERTKKIPTV_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.23828125	2	536.329673	1070.64479	-2.078	-0.0011145	0.96181	0.00051585	-1.1161	-0.00059862	536.3299096300897	60.053	0.7844	60.132	59.863	60.647	0.078888					47	20	4	0	0	0	0.022587	1	6872	6872		108.09	4.0307	1	738390	+		14124	28207	9931	9949	15434	15434					0.11229693777022476
ERTQTVSI	8	Unmodified	_ERTQTVSI_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.25384521484375	2	467.253631	932.49271	0.11535	5.39E-05	-0.28712	-0.00013416	-0.17177	-8.026E-05	467.25338580052164	34.064	1.1091	34.114	33.765	34.874	0.050255					79	27	5	0	0	0	0.91956	1	2474	2474		49.442	1.7842	1	3293900			14125	4267	9932	9950	15435	15435					0.023762930294765283
ERTRLVQP	8	Unmodified	_ERTRLVQP_					0	0	0			REV__ENST00000376716.9_1_19:52507122-52511423:-|nuORF	REV__ENST00000376716.9_1_19:52507122-52511423:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2081604003906	2	499.790715	997.566878	-0.79382	-0.00039674	0.89302	0.00044632	0.099202	4.958E-05	499.79078664326414	42.766	0.72668	42.54	42.298	43.025	-0.22597					27	18	2	0	0	0	0.027866	1	3923	3923		53.351	0	1	1388300	+		14126	31367	9933	9951	15436	15436					0.06799680911660744
ERVALVSP	8	Unmodified	_ERVALVSP_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.77996826171875	2	435.75581	869.497067	-1.123	-0.00048935	0.81379	0.00035461	-0.3092	-0.00013474	435.7559911978323	38.935	0.71412	38.771	38.476	39.19	-0.16459					50	19	4	0	0	0	0.027866	1	3283	3283		45.952	25.955	1	2585100	+		14127	23341	9934	9952	15437	15437					0.0570980224304094
ERVFKGIVL	9	Unmodified	_ERVFKGIVL_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.8094482421875	2	530.829309	1059.64407	-0.6421	-0.00034085	0.33426	0.00017744	-0.30784	-0.00016341	530.8297373127891	17.636	0.2491	17.43	17.315	17.564	-0.20669					7	4	2	0	0	0	0.024381	1	201	201		45.952	0	1	14392	+		14128	24979	9935	9953	15438	15438					0.11662899127986748
ERVLTVHKAVK	11	Unmodified	_ERVLTVHKAVK_					0	0	0			REV__ENSG00000110315|ENST00000265981|RNF141	REV__ENSG00000110315|ENST00000265981|RNF141	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2645568847656	3	427.266345	1278.7772	-0.45996	-0.00019653	-4.0555	-0.0017328	-4.5154	-0.0019293	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0408	1	5966	5966		27.644	4.266	1	57851000	+		14129	21849	9936	9954	15439	15439					0.14896718513841734
ERVLTVHKAVK	11	Unmodified	_ERVLTVHKAVK_					0	0	0			REV__ENSG00000110315|ENST00000265981|RNF141	REV__ENSG00000110315|ENST00000265981|RNF141	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.264404296875	3	427.266345	1278.7772	-0.58513	-0.00025001	-3.9587	-0.0016914	-4.5439	-0.0019414	427.2647783278071	53.901	2.7621	53.765	53.393	56.155	-0.13616					276	78	6	0	0	0	1.0408	1	5746	5746		27.644	3.4121	1	50487000	+		14130	21849	9936	9954	15440	15440					0.14896718513841734
ERVSCPTIVS	10	Carbamidomethyl (C)	_ERVSC(Carbamidomethyl (C))PTIVS_	ERVSC(1)PTIVS		ERVSC(85)PTIVS		0	1	0			REV__ENST00000428078.4_1_22:17602872-17603542:+|nuORF	REV__ENST00000428078.4_1_22:17602872-17603542:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.2925415039062	2	574.29243	1146.57031	-0.46084	-0.00026466	0.44898	0.00025785	-0.011857	-6.8093E-06	574.2925367419647	65.001	0.88831	64.767	64.49	65.379	-0.2345					62	21	4	0	0	0	0.52765	1	7405	7405		85.161	8.3867	1	6694300	+		14131	32313	9937	9955	15441	15441	424				0.0028856290334715595
ERYKSVKI	8	Unmodified	_ERYKSVKI_					0	0	0			REV__ENST00000251810.7_1_8:103218186-103218420:-|nuORF	REV__ENST00000251810.7_1_8:103218186-103218420:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.80291748046875	2	511.803291	1021.59203	0.27806	0.00014231	0.02918	1.4934E-05	0.30724	0.00015725	511.8029576351177	18.81	0.74131	18.606	18.312	19.053	-0.20371					42	14	5	0	0	0	0.93274	1	341	341		47.916	0	1	378450	+		14132	29508	9938	9956	15442	15442					0.08209735714228827
ERYRLEEP	8	Unmodified	_ERYRLEEP_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3162231445312	2	546.277638	1090.54072	0.56064	0.00030627	1.9434	0.0010617	2.5041	0.0013679	546.2783952166086	20.655	0.59213	20.459	20.138	20.73	-0.19577					18	11	2	0	0	0	0.027866	1	570	570		66.429	30.811	1	55292			14133	3314	9939	9957	15443	15443					-0.0009263305048534676
ERYRLEEP	8	Unmodified	_ERYRLEEP_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.277638	1090.54072	-0.15543	-8.4907E-05	3.0771	0.001681	2.9217	0.0015961	546.2789704380472	20.587	0.44419	20.419	20.098	20.542	-0.16774	-0.020145	0.00057104	NaN	66.429	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62826			14134	3314	9939	9957							-0.0009263305048534676
ESADEPIVK	9	Unmodified	_ESADEPIVK_					0	0	0			REV__ENSG00000101126|ENST00000621696|ADNP	REV__ENSG00000101126|ENST00000621696|ADNP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.28924560546875	2	494.253297	986.492041	0.67844	0.00033532	0.67314	0.0003327	1.3516	0.00066802	494.25364176915645	58.503	0.44894	58.503	58.266	58.714	0					15	11	2	0	0	0	0.024205	1	6634	6634		44.117	12.587	1	150390	+		14135	21185	9940	9958	15444	15444					-0.0017454641023277873
ESADQTNI	8	Unmodified	_ESADQTNI_					0	0	0			REV__ENST00000376954.5_1_X:47775298-47775454:+|nuORF	REV__ENST00000376954.5_1_X:47775298-47775454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.7370910644531	2	439.198522	876.38249	0.58538	0.0002571	0.017688	7.7685E-06	0.60307	0.00026487	439.1987242359791	61.71	0.54147	61.483	61.225	61.766	-0.22663					34	13	3	0	0	0	0.027866	1	7154	7154		55.504	29.93	1	749340	+		14136	31370	9941	9959	15445	15445					-0.06064552029567949
ESAIFSKIE	9	Unmodified	_ESAIFSKIE_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.27099609375	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	0.94809	1	13649	13649		29.15	0	1	6386000	+		14137	23585	9942	9960	15446	15446					0.018063304864767815
ESAKGAPSI	9	Unmodified	_ESAKGAPSI_					0	0	0		nc|ENSG00000188517|Q9BXS0-2|COL25A1;ENSG00000188517|ENST00000399132|COL25A1;COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant;COL25A1|p.H76Y|1|0.32|ENSG00000188517|chr4:109301794-109301794|G/A|missense_variant;nc|ENSG00000188517|Q9BXS0-3|COL25A1	nc|ENSG00000188517|Q9BXS0-2|COL25A1	nc|ENSG00000188517|Q9BXS0-2|COL25A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.22955322265625	2	430.229625	858.444697	0.062102	2.6718E-05	0.51675	0.00022232	0.57885	0.00024904	430.2297965994174	42.867	1.2963	42.727	42.278	43.575	-0.13929					88	35	4	0	0	0	0.17822	1	3982	3982		93.195	5.4412	1	8392300			14138	472	9943	9961	15447	15447					0.009812191094397349
ESALVMQTA	9	Unmodified	_ESALVMQTA_					0	0	0			REV__nc|ENSG00000138674|O94979-2|SEC31A	REV__nc|ENSG00000138674|O94979-2|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.236328125	2	475.236593	948.458632	-0.83857	-0.00039852	-3.3548	-0.0015943	-4.1934	-0.0019928	475.23496754598204	105.62	0.52734	105.48	105.3	105.83	-0.13099					32	19	2	0	0	0	0.87448	1	13157	13157		34.173	0	1	165950	+		14139	23882	9944	9962	15448	15448					-0.017658714538015374
ESAPLLLLL	9	Unmodified	_ESAPLLLLL_					0	0	0			REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.76470947265625	2	484.804968	967.595384	0.12246	5.9368E-05	-1.7735	-0.00085981	-1.6511	-0.00080044	484.80431130861774	99.138	0.44485	99.134	98.9	99.345	-0.0038834					14	9	2	0	0	0	0.024436	1	12619	12619		30.504	7.4612	1	50296	+		14140	30780	9945	9963	15449	15449					0.11028985768246002
ESAPLLLLL	9	Unmodified	_ESAPLLLLL_					0	0	0			REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.804968	967.595384	1.0287	0.00049874	-1.9487	-0.00094474	-0.91996	-0.000446	484.8042357465137	98.911	0.48045	98.786	98.59	99.071	-0.12459	-0.15267	-0.00033557	NaN	30.504	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46408	+		14141	30780	9945	9963							0.11028985768246002
ESARKGLVP	9	Unmodified	_ESARKGLVP_					0	0	0		ENST00000240101.2_1_8:29205656-29205974:-|nuORF	ENST00000240101.2_1_8:29205656-29205974:-|nuORF	ENST00000240101.2_1_8:29205656-29205974:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7355041503906	2	478.779816	955.545079	-0.0088266	-4.226E-06	2.1337	0.0010216	2.1249	0.0010174	478.78012062727123	60.047	0.51537	59.846	59.577	60.093	-0.20016					37	13	4	0	0	0	0.024021	1	6815	6815		68.787	17.451	1	726930			14142	11279	9946	9964	15450	15450					0.06552876163095789
ESASKSRSLL	10	Unmodified	_ESASKSRSLL_					0	0	0			REV__nc|ENSG00000113448|Q08499-11|PDE4D	REV__nc|ENSG00000113448|Q08499-11|PDE4D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7965087890625	2	539.29857	1076.58259	-0.23306	-0.00012569	-3.2458	-0.0017504	-3.4789	-0.0018761	539.2962058372193	99.021	0.62314	99.021	98.734	99.358	0					25	13	3	0	0	0	0.96822	1	12666	12666		49.536	3.5638	1	66268	+		14143	36575	9947	9965	15451	15451					0.047359226380422115
ESASKSRSLL	10	Unmodified	_ESASKSRSLL_					0	0	0			REV__nc|ENSG00000113448|Q08499-11|PDE4D	REV__nc|ENSG00000113448|Q08499-11|PDE4D	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	539.29857	1076.58259	-0.23306	-0.00012569	-3.2458	-0.0017504	-3.4789	-0.0018761	539.2962058372193	99.021	0.62314	99.021	98.734	99.358	0	-0.12876	-0.00055276	NaN	49.536	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66268	+		14144	36575	9947	9965							0.047359226380422115
ESATISLSR	9	Unmodified	_ESATISLSR_					0	0	0			REV__ENST00000265295.8_1_5:169028356-169028431:+|nuORF	REV__ENST00000265295.8_1_5:169028356-169028431:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.28271484375	2	482.258914	962.503274	0.20851	0.00010056	-1.2117	-0.00058433	-1.0031	-0.00048378	482.25819535620366	101.56	0.26574	101.44	101.37	101.64	-0.12576					8	5	2	0	0	0	0.024477	1	12641	12641		27.882	15.676	1	33795	+		14145	29736	9948	9966	15452	15452					0.020522756839000067
ESAVVTWAL	9	Unmodified	_ESAVVTWAL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2586364746094	2	488.260925	974.507297	-0.34126	-0.00016662	-4.3551	-0.0021264	-4.6964	-0.0022931	488.2588091580521	41.558	1.4917	41.581	41.147	42.638	0.023006					113	42	5	0	0	0	0.4752	1	3683	3683		60.972	9.6365	1	18745000	+		14146	25017	9949	9967	15453	15453					0.01902365177613774
ESAWGLSSQV	10	Unmodified	_ESAWGLSSQV_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|33|2|anti-sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|33|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7974853515625	2	532.256371	1062.49819	-1.7155	-0.00091309	0.86687	0.0004614	-0.84864	-0.0004517	532.2567619912527	90.503	0.46462	90.503	90.297	90.762	0					18	10	2	0	0	0	0.03519	1	11471	11471		30.318	10.958	1	142870	+		14147	37599	9950	9968	15454	15454					-0.030560281787074928
ESCLGPQAPSA	11	Unmodified	_ESCLGPQAPSA_					0	0	0		ENST00000377833.8_1_10:17026244-17061882:-|nuORF	ENST00000377833.8_1_10:17026244-17061882:-|nuORF	ENST00000377833.8_1_10:17026244-17061882:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2396240234375	2	530.242406	1058.47026	-0.090946	-4.8223E-05	-2.6678	-0.0014146	-2.7587	-0.0014628	530.2409838189699	107.43	1.1014	107.43	106.37	107.47	0.0018311					68	32	3	0	0	0	0.94988	1	13674	13674		47.96	13.787	1	407140			14148	13217	9951	9969	15455	15455					-0.05663674430456922
ESCLNEKIIT	10	Unmodified	_ESCLNEKIIT_					0	0	0		ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15	ENSG00000133863|ENST00000643185|TEX15	ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.3455200195312	2	575.294639	1148.57472	-0.32541	-0.00018721	1.2912	0.0007428	0.96575	0.00055559	575.2954831062707	97.79	0.50758	97.625	97.397	97.904	-0.1652					17	11	2	0	0	0	0.03519	1	12056	12056		28.081	0	1	67897			14149	4736	9952	9970	15456	15456					0.006380273262720948
ESDEEANMKS	10	Unmodified	_ESDEEANMKS_					0	0	0			REV__nc|ENSG00000135899|Q9HB58-5|SP110	REV__nc|ENSG00000135899|Q9HB58-5|SP110	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.2294311523438	2	570.229693	1138.44483	0.10733	6.1204E-05	0.31497	0.00017961	0.42231	0.00024081	570.2297204363324	63.123	1.3473	62.902	62.609	63.956	-0.22097					71	33	4	0	0	0	0.62431	1	7125	7125		74.255	5.4682	1	3336900	+		14150	23590	9953	9971	15457	15457					-0.11885193743546552
ESDEVELSY	9	Unmodified	_ESDEVELSY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7294311523438	2	535.729852	1069.44515	0.53562	0.00028695	-1.188	-0.00063647	-0.65241	-0.00034952	535.7291865235495	60.019	1.4382	59.821	59.499	60.937	-0.19742					107	36	5	0	0	0	0.014907	6	6678	6633;6643;6654;6665;6678;6693		162.31	75.787	1	16075000			14151	6327	9954	9972	15458;15459;15460;15461;15462;15463	15462					-0.08679450752038065
ESDEVELSY	9	Unmodified	_ESDEVELSY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7293090820312	2	535.729852	1069.44515	-0.25375	-0.00013594	-0.2823	-0.00015124	-0.53605	-0.00028718	535.7296789191862	59.959	1.3952	59.783	59.478	60.874	-0.1761					104	35	5	0	0	0	0.01471	6	6653	6632;6642;6653;6665;6677;6690		187.63	90.161	1	15584000			14152	6327	9954	9972	15464;15465;15466;15467;15468;15469	15466					-0.08679450752038065
ESDEVELSY	9	Unmodified	_ESDEVELSY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.729248046875	2	535.729852	1069.44515	-0.77441	-0.00041487	0.24465	0.00013107	-0.52976	-0.00028381	535.7299423878133	60.088	1.2073	59.839	59.533	60.741	-0.24842					102	30	6	0	0	0	0.012965	6	6671	6636;6647;6659;6671;6684;6699		183.89	98.734	1	15618000			14153	6327	9954	9972	15470;15471;15472;15473;15474;15475	15473					-0.08679450752038065
ESDFRGFN	8	Unmodified	_ESDFRGFN_					0	0	0			REV__ENSG00000103249|ENST00000382745|CLCN7	REV__ENSG00000103249|ENST00000382745|CLCN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.21502685546875	2	486.214506	970.414459	0.2656	0.00012914	0.17996	8.7501E-05	0.44557	0.00021664	486.2145138310673	101.61	2.0628	101.48	100.65	102.72	-0.12576					137	50	3	0	0	0	1.0009	1	12686	12686		37.159	2.9866	1	181460	+		14154	21370	9955	9973	15476	15476					-0.07193139555749894
ESDFSNPLY	9	Unmodified	_ESDFSNPLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2349243164062	2	536.235104	1070.45566	-0.44344	-0.00023779	0.21233	0.00011386	-0.23111	-0.00012393	536.2350981865758	67.6	0.78592	67.366	66.97	67.756	-0.23376					31	18	2	0	0	0	0.1158	2	7800	7789;7800		107.01	22.092	1	1140400			14155	8510	9956	9974	15477;15478	15478					-0.07675423306932316
ESDFSNPLY	9	Unmodified	_ESDFSNPLY_					0	0	0		nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-6|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2346801757812	2	536.235104	1070.45566	-0.80001	-0.00042899	-0.046852	-2.5124E-05	-0.84687	-0.00045412	536.2348375049121	67.655	0.86869	67.417	66.878	67.747	-0.23814					43	20	5	0	0	0	0.42604	1	7778	7778		64.207	9.431	1	992700			14156	8510	9956	9974	15479	15479					-0.07675423306932316
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.7594604492188	2	541.759278	1081.504	-0.70991	-0.0003846	0.28106	0.00015227	-0.42884	-0.00023233	541.7594155655511	41.023	1.0701	40.888	40.597	41.668	-0.13553					81	27	4	0	0	0	0.062622	5	3592	3582;3592;3604;3618;3631		124.08	41.775	1	10731000			14157	1410	9957	9975	15480;15481;15482;15483;15484	15481					-0.033489296670495605
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.7593994140625	2	541.759278	1081.504	-0.51442	-0.00027869	0.027178	1.4724E-05	-0.48724	-0.00026397	541.7592801312776	41.253	1.047	41.025	40.69	41.737	-0.2278					72	26	4	0	0	0	0.03666	5	3609	3599;3609;3621;3635;3648		136.27	55.984	1	10124000			14158	1410	9957	9975	15485;15486;15487;15488;15489	15486					-0.033489296670495605
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.7595825195312	2	541.759278	1081.504	-1.5047	-0.00081517	1.008	0.00054608	-0.49669	-0.00026909	541.7598381097632	41.292	0.95409	41.061	40.771	41.725	-0.23029					74	24	4	0	0	0	0.013924	5	3627	3603;3615;3627;3641;3655		167.23	51.77	1	10517000			14159	1410	9957	9975	15490;15491;15492;15493;15494	15492					-0.033489296670495605
ESDINSVRY	9	Unmodified	_ESDINSVRY_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000559541.1_1_15:52416976-52428016:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	541.759278	1081.504	-1.1152	-0.00060418	-0.72353	-0.00039198	-1.8388	-0.00099616	541.7582909371108	40.735	0.26921	40.758	40.595	40.864	0.023006	-0.024214	-0.0013013	NaN	167.23	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154220			14160	1410	9957	9975							-0.033489296670495605
ESDPDCLPL	9	Unmodified	_ESDPDCLPL_					0	0	0		ENST00000353979.7_1_10:99211971-99212182:+|nuORF	ENST00000353979.7_1_10:99211971-99212182:+|nuORF	ENST00000353979.7_1_10:99211971-99212182:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7502746582031	2	494.718233	987.421912	-0.37894	-0.00018747	-4.1144	-0.0020354	-4.4933	-0.0022229	494.7166486989413	45.684	0.17137	45.588	45.461	45.632	-0.096649					6	4	2	0	0	0	0.024436	1	4360	4360		38.806	0	1	86599			14161	12617	9958	9976	15495	15495					-0.07230168070361742
ESDSQDMQEL	10	Unmodified	_ESDSQDMQEL_					0	0	0			REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	REV__nc|ENSG00000163947|Q9NR81-4|ARHGEF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	591.3245849609375	2	591.234975	1180.4554	-0.42892	-0.00025359	-0.04412	-2.6085E-05	-0.47304	-0.00027968	591.2352985163527	47.297	0.65208	47.144	46.858	47.51	-0.15301					19	17	2	0	0	0	0.03519	1	4727	4727		70.816	30.758	1	170000	+		14162	25664	9959	9977	15496	15496					-0.12761211089105018
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.7670288085938	2	572.767103	1143.51965	-0.25391	-0.00014543	-0.2166	-0.00012406	-0.47052	-0.0002695	572.7668597145537	47.819	0.76879	47.722	47.417	48.186	-0.097549					62	20	4	0	0	0	0.15366	3	4712	4699;4712;4724		98.629	24.655	1	3681300			14163	5835	9960	9978	15497;15498;15499	15498					-0.046366431500018734
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.7666015625	2	572.767103	1143.51965	-0.66582	-0.00038136	0.00042699	2.4457E-07	-0.66539	-0.00038111	572.7669889894714	48.124	0.79994	47.848	47.492	48.292	-0.27598					64	21	4	0	0	0	0.15366	2	4739	4729;4739		98.629	24.409	1	3556000			14164	5835	9960	9978	15500;15501	15501					-0.046366431500018734
ESDSRQIFY	9	Unmodified	_ESDSRQIFY_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.766357421875	2	572.767103	1143.51965	0.19872	0.00011382	-0.82469	-0.00047236	-0.62598	-0.00035854	572.7665092900124	47.922	1.1665	47.735	47.423	48.59	-0.18684					76	31	5	0	0	0	0.2101	1	4720	4720		87.696	8.2454	1	3788300			14165	5835	9960	9978	15502	15502					-0.046366431500018734
ESDSTIVYY	9	Unmodified	_ESDSTIVYY_					0	0	0		ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF;ENSG00000198860|ENST00000645668|TSEN15	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7428588867188	2	538.742762	1075.47097	-1.3105	-0.00070605	1.3272	0.00071504	0.01669	8.9914E-06	538.7432669661297	61.389	0.74017	61.132	60.848	61.588	-0.25725					48	17	4	0	0	0	0.20304	1	6858	6858		88.643	19.55	1	1270900			14166	10228	9961	9979	15503	15503					-0.06374556509740614
ESDTSCRDD	9	Unmodified	_ESDTSCRDD_					0	0	0			REV__GCC1|p.H90D|1|0.09|ENSG00000179562|chr7:127584915-127584915|G/C|missense_variant	REV__GCC1|p.H90D|1|0.09|ENSG00000179562|chr7:127584915-127584915|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7343139648438	2	514.185285	1026.35602	-0.44899	-0.00023086	-2.2212	-0.0011421	-2.6702	-0.001373	514.182941291955	42.312	0.33054	42.08	41.904	42.234	-0.23186					11	8	2	0	0	0	0.024506	1	3765	3765		16.473	0	1	48931	+		14167	36064	9962	9980	15504	15504					-0.15610608983206475
ESEEAHRCL	9	Unmodified	_ESEEAHRCL_					0	0	0		ENSG00000133561|ENST00000328902|GIMAP6;nc|ENSG00000133561|Q6P9H5-2|GIMAP6	ENSG00000133561|ENST00000328902|GIMAP6	ENSG00000133561|ENST00000328902|GIMAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7831420898438	2	537.237655	1072.46076	-1.0919	-0.00058663	-2.0947	-0.0011254	-3.1867	-0.001712	537.2366611116079	66.538	0.37229	66.293	66.05	66.422	-0.24517					22	9	3	0	0	0	0.02435	1	7625	7625		42.396	5.237	1	575410			14168	4714	9963	9981	15505	15505					-0.07257442715990692
ESEEINIQL	9	Unmodified	_ESEEINIQL_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7494506835938	2	537.769311	1073.52407	-0.37044	-0.00019921	-4.1149	-0.0022129	-4.4854	-0.0024121	537.7665359166804	76.335	0.20012	76.083	75.944	76.145	-0.25162					5	4	2	0	0	0	0.024397	1	9054	9054		31.53	2.3803	1	38887	+		14169	19108	9964	9982	15506	15506					-0.009751787270943169
ESELDIGYRQ	10	Unmodified	_ESELDIGYRQ_					0	0	0			REV__ENST00000609125.1_1_14:64908651-64908900:-|nuORF	REV__ENST00000609125.1_1_14:64908651-64908900:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5291748046875	3	403.863053	1208.56733	3.3737	0.0013625	-2.0205	-0.00081601	1.3532	0.0005465	403.8621101727093	18.155	0.29741	17.912	17.726	18.024	-0.24256					8	5	2	0	0	0	0.03519	1	241	241		20.837	0	1	22780	+		14170	35979	9965	9983	15507	15507					-0.028609889498056873
ESELTRLL	8	Unmodified	_ESELTRLL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF;UBTF|p.L432F|1|0.43|ENSG00000108312|chr17:44210857-44210857|G/A|missense_variant	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.7704772949219	2	480.771657	959.528761	0.063972	3.0756E-05	-1.3137	-0.0006316	-1.2497	-0.00060084	480.77032537317103	58.658	1.1337	58.476	58.101	59.235	-0.18134					55	27	3	0	0	0	0.59392	1	6460	6460		76.847	0	1	3092800			14171	2888	9966	9984	15508	15508					0.04737750206345481
ESELTRLL	8	Unmodified	_ESELTRLL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF;UBTF|p.L432F|1|0.43|ENSG00000108312|chr17:44210857-44210857|G/A|missense_variant	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.7704772949219	2	480.771657	959.528761	0.84708	0.00040725	-1.2196	-0.00058637	-0.37256	-0.00017912	480.76994743819836	58.801	1.3772	58.559	58.086	59.463	-0.24165					87	33	4	0	0	0	0.59392	1	6464	6464		76.847	0	1	3281900			14172	2888	9966	9984	15509	15509					0.04737750206345481
ESEMLELFVWV	11	Unmodified	_ESEMLELFVWV_					0	0	0			REV__nc|ENSG00000285777|Q5TZF3-1|ANKRD45	REV__nc|ENSG00000285777|Q5TZF3-1|ANKRD45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.76446533203125	3	461.228456	1380.66354	-0.22464	-0.00010361	1.6136	0.00074425	1.389	0.00064064	461.2295519858677	21.677	0.9116	21.748	21.451	22.362	0.071487					39	18	3	0	0	0	0.024792	1	647	647		13.508	0	1	90982	+		14173	37218	9967	9985	15510	15510					-0.011565574340693274
ESENISEPY	9	Unmodified	_ESENISEPY_					0	0	0		ENSG00000135976|ENST00000420699|ANKRD36;nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C	ENSG00000135976|ENST00000420699|ANKRD36;nc|ENSG00000174501|Q5JPF3|ANKRD36C	ENSG00000135976|ENST00000420699|ANKRD36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.75244140625	2	534.230019	1066.44548	-0.61812	-0.00033022	-1.2097	-0.00064623	-1.8278	-0.00097645	534.2286881443422	40.057	0.49249	39.832	39.658	40.15	-0.225					18	12	2	0	0	0	0.024205	1	3457	3457		63.306	22.734	1	183130			14174	4965;8476	9968	9986	15511	15511					-0.08508031032170038
ESENVLSSKVE	11	Unmodified	_ESENVLSSKVE_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.2493896484375	2	610.803882	1219.59321	-1.2467	-0.00076147	-3.4677	-0.0021181	-4.7144	-0.0028796	610.801300929153	61.865	0.48561	61.651	61.252	61.737	-0.21375					17	11	2	0	0	0	0.024797	1	6896	6896		38.754	0	1	157810	+		14175	24832	9969	9987	15512	15512					-0.007801394981925114
ESERWELL	8	Unmodified	_ESERWELL_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3019409179688	2	531.266739	1060.51892	0.20764	0.00011031	0.29584	0.00015717	0.50348	0.00026748	531.2667100324725	58.313	0.61513	58.079	57.853	58.468	-0.23483					23	14	3	0	0	0	0.027866	1	6393	6393		58.782	5.693	1	727500			14176	6407	9970	9988	15513	15513					-0.008914377990549838
ESESKLSLT	9	Unmodified	_ESESKLSLT_					0	0	0			REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2496032714844	2	497.258579	992.502606	-0.92256	-0.00045875	-3.425	-0.0017031	-4.3475	-0.0021619	497.2564855637203	29.292	0.58067	29.292	28.947	29.528	0					30	14	3	0	0	0	0.024017	1	1743	1743		65.465	3.358	1	303570	+		14177	21884	9971	9989	15514	15514					0.006054362442114325
ESESKLSLT	9	Unmodified	_ESESKLSLT_					0	0	0			REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.258579	992.502606	-0.58414	-0.00029047	-8.312	-0.0041332	-8.8961	-0.0044237	497.25298350157175	29.642	0.20072	29.645	29.551	29.751	0.0031357	0.17659	-0.0028075	NaN	65.465	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23790	+		14178	21884	9971	9989							0.006054362442114325
ESETEWWWAR	10	Unmodified	_ESETEWWWAR_					0	0	0		ENST00000555825.5_1_14:104201493-104202681:-|nuORF;ENST00000556334.5_1_14:104201493-104205387:-|nuORF;ENST00000555391.5_1_14:104201493-104210315:-|nuORF;ENSG00000088808|ENST00000202556|PPP1R13B	ENST00000555825.5_1_14:104201493-104202681:-|nuORF	ENST00000555825.5_1_14:104201493-104202681:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.7693176269531	3	460.538681	1378.59421	0.35774	0.00016475	1.781	0.00082023	2.1388	0.00098498	460.5391594277111	40.136	0.2249	40.136	39.951	40.176	0					6	5	2	0	0	0	0.03519	1	3507	3507		20.837	0.52214	1	63127			14179	1875	9972	9990	15515	15515					-0.07993880338631243
ESEWPFLI	8	Unmodified	_ESEWPFLI_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ATXN10-TUBGCP6|2|fusion;ATXN10-TUBGCP6|1|fusion	ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ATXN10-TUBGCP6|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.28680419921875	2	510.755475	1019.4964	-0.0080655	-4.1195E-06	-0.071662	-3.6602E-05	-0.079728	-4.0721E-05	510.75452554944417	58.603	0.40496	58.416	58.206	58.611	-0.18705					18	10	2	0	0	0	0.027866	1	6631	6631		35.201	8.5078	1	455660			14180	165;4434	9973	9991	15516	15516					-0.012570371966603489
ESEYSRTKY	9	Unmodified	_ESEYSRTKY_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.723388671875	2	581.772385	1161.53022	-1.1061	-0.00064348	1.4543	0.00084609	0.34826	0.00020261	581.7728692883393	37.462	0.47198	37.252	37.037	37.509	-0.2092					24	11	3	0	0	0	0.024205	1	3034	3034		63.306	0	1	380390			14181	1465	9974	9992	15517	15517					-0.04408660495573713
ESFIFISAKN	10	Unmodified	_ESFIFISAKN_					0	0	0			REV__L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|18|1|anti-sense	REV__L1ME2_dup8015|chr10:47985816-47986226:-|4.087770179235701|0.2483043414678888|4.04|519.0|18|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3070068359375	2	578.305864	1154.59717	0.22895	0.0001324	-1.7996	-0.0010407	-1.5706	-0.0009083	578.3047626805482	110.1	0.30796	109.95	109.85	110.15	-0.14889					23	14	2	0	0	0	1.0992	1	13499	13499		32.812	10.853	1	86568	+		14182	36213	9975	9993	15518	15518					0.02605994786199517
ESFLEYMN	8	Unmodified	_ESFLEYMN_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2714233398438	2	516.720775	1031.427	-0.6892	-0.00035612	0.55469	0.00028662	-0.13451	-6.9505E-05	516.7209127967488	49.189	0.42243	49.089	48.803	49.226	-0.1008					17	10	2	0	0	0	0.027866	1	4900	4900		53.351	0	1	136330			14183	1059	9976	9994	15519	15519					-0.0874586420770811
ESFNTFANR	9	Unmodified	_ESFNTFANR_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A;nc|ENSG00000143498|Q15573-2|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.25537109375	2	543.254163	1084.49377	-1.186	-0.00064428	3.9119	0.0021252	2.7259	0.0014809	543.2561891124572	30.137	1.1138	30.145	29.797	30.911	0.0086708					64	26	4	0	0	0	0.56934	1	1892	1892		54.776	3.4409	1	2079200			14184	5655	9977	9995	15520	15520					-0.045094926016190584
ESGFLGLC	8	Unmodified	_ESGFLGLC_					0	0	0			REV__ENST00000587885.1_1_19:13261253-13263917:+|nuORF	REV__ENST00000587885.1_1_19:13261253-13263917:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.151123046875	2	413.194196	824.37384	0.24911	0.00010293	-1.6118	-0.00066599	-1.3627	-0.00056306	413.19339974772373	81.206	1.241	81.013	80.561	81.802	-0.19334					47	29	2	0	0	0	0.027866	1	9809	9809		57.453	30.657	1	149230	+		14185	35634	9978	9996	15521	15521					-0.045371971997496985
ESGIKLLTV	9	Unmodified	_ESGIKLLTV_					0	0	0			REV__MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant	REV__MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7354736328125	2	480.292225	958.569897	1.3644	0.00065533	-1.7933	-0.0008613	-0.42884	-0.00020597	480.29117520497897	59.232	0.77957	59.232	58.999	59.779	0					38	20	3	0	0	0	0.024319	1	6807	6807		47.657	5.2612	1	643280	+		14186	24063	9979	9997	15522	15522					0.0889551124580521
ESGIRGWY	8	Unmodified	_ESGIRGWY_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.235595703125	2	484.235242	966.45593	0.72235	0.00034979	1.2027	0.00058238	1.925	0.00093216	484.2357566892018	82.977	1.0398	82.757	82.086	83.126	-0.22015					55	23	3	0	0	0	1.0133	1	10013	10013		35.201	1.0282	1	604890	+		14187	28092	9980	9998	15523	15523					-0.028639587964335078
ESGLALHFIP	10	Unmodified	_ESGLALHFIP_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.8213500976562	2	542.295299	1082.57605	-0.28367	-0.00015383	-0.066587	-3.611E-05	-0.35026	-0.00018994	542.2951941772752	68.343	0.64521	68.113	67.794	68.439	-0.23048					22	15	2	0	0	0	0.03519	1	7848	7848		30.504	0	1	223490	+		14188	25347	9981	9999	15524	15524					0.03806029477323136
ESGLLSILL	9	Unmodified	_ESGLLSILL_					0	0	0		ENST00000402615.6_1_14:105260454-105260538:-|nuORF	ENST00000402615.6_1_14:105260454-105260538:-|nuORF	ENST00000402615.6_1_14:105260454-105260538:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2844543457031	2	472.786776	943.558998	0.29707	0.00014045	-3.6458	-0.0017237	-3.3487	-0.0015832	472.7866478462673	83.539	1.6973	83.448	83.043	84.741	-0.090454					83	39	5	0	0	0	0.59099	1	10396	10396		53.351	2.016	1	3320500			14189	13685	9982	10000	15525	15525					0.08496108871543129
ESGLRVLAI	9	Unmodified	_ESGLRVLAI_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.27667236328125	2	479.290017	956.565481	0.52972	0.00025389	1.181	0.00056605	1.7107	0.00081994	479.2901063248524	83.988	0.21883	83.85	83.758	83.977	-0.13789					5	4	2	0	0	0	0.024436	1	10146	10146		30.504	0	1	30798			14190	7600	9983	10001	15526	15526					0.0854604682289164
ESGPPSAALVI	11	Unmodified	_ESGPPSAALVI_					0	0	0			REV__ENST00000326005.10_1_15:64979970-64980027:-|nuORF	REV__ENST00000326005.10_1_15:64979970-64980027:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.784423828125	2	520.784764	1039.55498	-0.25442	-0.0001325	-1.0335	-0.00053821	-1.2879	-0.00067071	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	0.98218	1	13295	13295		40.778	9.2484	1	3782600	+		14191	30398	9984	10002	15527	15527					0.036780193777985914
ESGPVAEWTL	10	Unmodified	_ESGPVAEWTL_					0	0	0			REV__nc|ENSG00000275395|Q9Y6R7|FCGBP;REV__FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	REV__nc|ENSG00000275395|Q9Y6R7|FCGBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3165893554688	2	544.766571	1087.51859	-0.18885	-0.00010288	0.37549	0.00020456	0.18664	0.00010168	544.7667355369335	87.052	0.46297	87.073	86.886	87.349	0.021263					15	10	2	0	0	0	0.03519	1	10848	10848		25.574	0	1	109670	+		14192	29190;36032	9985	10003	15528	15528					-0.021668575189096373
ESGRSQSGSPN	11	Unmodified	_ESGRSQSGSPN_					0	0	0		ENSG00000226763|ENST00000417606|SRRM5	ENSG00000226763|ENST00000417606|SRRM5	ENSG00000226763|ENST00000417606|SRRM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.7821044921875	2	553.247066	1104.47958	0.78997	0.00043705	-3.6034	-0.0019936	-2.8134	-0.0015565	553.2450171082542	82.476	1.9617	82.366	81.319	83.28	-0.11006					74	46	2	0	0	0	0.024806	1	10321	10321		78.264	40.756	1	182300			14193	10666	9986	10004	15529	15529					-0.06848189820539119
ESHHAPAIVT	10	Unmodified	_ESHHAPAIVT_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.265869140625	2	531.272355	1060.53016	2.8955	0.0015383	0.51148	0.00027174	3.407	0.0018101	531.2726216047184	17.24	0.19778	17.24	17.151	17.349	0					6	3	2	0	0	0	0.03519	1	134	134		20.947	0	1	26546	+		14194	20894	9987	10005	15530	15530					0.0023138429510254355
ESHPLGAGPL	10	Unmodified	_ESHPLGAGPL_					0	0	0			REV__ENST00000360737.4_1_22:46493806-46505887:+|nuORF	REV__ENST00000360737.4_1_22:46493806-46505887:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2681579589844	2	489.256174	976.497795	-1.0355	-0.00050662	-1.4447	-0.00070684	-2.4802	-0.0012135	489.25659739520677	44.019	0.49142	43.874	43.639	44.131	-0.14471					34	13	3	0	0	0	0.03519	1	4121	4121		30.504	0	1	870570	+		14195	30919	9988	10006	15531	15531					0.00860596892096055
ESHPYEWRENR	11	Unmodified	_ESHPYEWRENR_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3028259277344	3	501.563889	1501.66984	-0.22375	-0.00011222	1.8206	0.00091317	1.5969	0.00080094	501.5651916231508	24.622	0.17169	24.447	24.296	24.468	-0.17484					6	3	2	0	0	0	0.024864	1	1080	1080		14.243	0	1	96443	+		14196	20775	9989	10007	15532	15532					-0.060929031583555116
ESHTIQHKV	9	Unmodified	_ESHTIQHKV_					0	0	0			REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.767333984375	2	539.78563	1077.55671	-0.98127	-0.00052968	-3.1135	-0.0016806	-4.0947	-0.0022103	539.7839569600968	27.755	0.45804	27.742	27.536	27.994	-0.012983					24	11	3	0	0	0	0.023655	1	1520	1520		79.713	30.271	1	291900	+		14197	23133	9990	10008	15533	15533					0.02103073186435722
ESIFSFRSA	9	Unmodified	_ESIFSFRSA_					0	0	0			REV__ENST00000304056.8_1_7:32919280-32919331:-|nuORF	REV__ENST00000304056.8_1_7:32919280-32919331:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.758544921875	2	522.261456	1042.50836	-0.54751	-0.00028594	-0.60566	-0.00031631	-1.1532	-0.00060226	522.2610996171358	58.953	1.1703	58.765	58.136	59.307	-0.18795					59	28	3	0	0	0	0.024477	1	6516	6516		35.618	17.294	1	1756200	+		14198	30101	9991	10009	15534	15534					-0.011194204534604069
ESIFSFRSA	9	Unmodified	_ESIFSFRSA_					0	0	0			REV__ENST00000304056.8_1_7:32919280-32919331:-|nuORF	REV__ENST00000304056.8_1_7:32919280-32919331:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.261456	1042.50836	0.63358	0.0003309	3.173	0.0016571	3.8066	0.001988	522.263231658968	58.762	1.2332	58.575	58.173	59.406	-0.18705	-0.095226	0.0034845	NaN	58.782	52	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246000	+		14199	30101	9991	10009							-0.011194204534604069
ESILAHRE	8	Unmodified	_ESILAHRE_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;ENST00000497004.5_1_3:158289136-158315942:+|nuORF	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7527770996094	2	477.753798	953.493044	-0.26122	-0.0001248	0.57503	0.00027472	0.31381	0.00014992	477.7537734805081	31.92	0.71517	31.989	31.606	32.321	0.06896					37	17	4	0	0	0	0.027866	1	2170	2170		37.159	5.2042	1	1069200			14200	8788	9992	10010	15535	15535					0.014437127493238222
ESILDNTPRH	10	Unmodified	_ESILDNTPRH_					0	0	0		ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	591.2990112304688	2	591.299101	1180.58365	-0.78003	-0.00046123	0.59659	0.00035276	-0.18344	-0.00010847	591.299369309404	27.471	0.76781	27.229	26.954	27.721	-0.24217					41	17	3	0	0	0	0.811	1	1529	1529		59.931	5.1545	1	2107700			14201	1960	9993	10011	15536	15536					0.0005813700693124702
ESILDNTPRH	10	Unmodified	_ESILDNTPRH_					0	0	0		ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	591.298583984375	2	591.299101	1180.58365	-0.81578	-0.00048237	0.65429	0.00038688	-0.16148	-9.5486E-05	591.2994187511589	27.403	0.63152	27.246	26.974	27.605	-0.15664					49	14	5	0	0	0	0.75651	1	1476	1476		63.534	10.445	1	2347500			14202	1960	9993	10011	15537	15537					0.0005813700693124702
ESILDQNKV	9	Unmodified	_ESILDQNKV_					0	0	0			REV__ENSG00000154305|ENST00000344922|MIA3	REV__ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7999877929688	2	523.279846	1044.54514	-0.65735	-0.00034398	-0.55843	-0.00029222	-1.2158	-0.0006362	523.2800625341786	48.682	0.45337	48.749	48.452	48.906	0.066795					18	12	2	0	0	0	0.024506	1	4883	4883		16.473	0.83134	1	151220	+		14203	24953	9994	10012	15538	15538					0.02464831372435583
ESILHKCI	8	Unmodified	_ESILHKCI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10825358-10825926:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2948303222656	2	471.757495	941.500437	0.54914	0.00025906	-0.27319	-0.00012888	0.27595	0.00013018	471.75722098978895	54.927	0.66251	54.927	54.656	55.319	0					41	18	3	0	0	0	0.027866	1	6082	6082		76.847	48.964	1	1679800			14204	695	9995	10013	15539	15539					0.02734729025382876
ESILMRKQA	9	Unmodified	_ESILMRKQA_					0	0	0		ENST00000574522.5_1_17:18759682-18768852:+|nuORF	ENST00000574522.5_1_17:18759682-18768852:+|nuORF	ENST00000574522.5_1_17:18759682-18768852:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.7666015625	2	538.300059	1074.58556	-0.54134	-0.0002914	-1.956	-0.0010529	-2.4973	-0.0013443	538.2987055263669	83.507	0.98307	83.417	82.83	83.813	-0.090454					32	22	2	0	0	0	0.023655	1	10384	10384		69.628	18.435	1	283520			14205	17087	9996	10014	15540	15540					0.05125474491228488
ESIMDKAYIY	10	Unmodified	_ESIMDKAYIY_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	616.7986450195312	2	616.797014	1231.57948	-0.80748	-0.00049805	3.5062	0.0021626	2.6987	0.0016646	616.7991561001866	46.484	1.5432	46.223	45.854	47.397	-0.26118					128	41	5	0	0	0	0.82838	1	4507	4507		58.782	4.0596	1	13397000			14206	8020	9997	10015	15541	15541					-0.02705088530979083
ESIPQKKVT	9	Unmodified	_ESIPQKKVT_					0	0	0			REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.787841796875	2	515.300581	1028.58661	0.11076	5.7077E-05	2.2309	0.0011496	2.3417	0.0012067	515.8051179357216	49.156	0.54321	49.156	49.039	49.582	0					18	14	2	0	0	0	0.024313	1	5065	5065		51.193	0	1	195620	+		14207	35296	9998	10016	15542	15542					0.07346012131756652
ESIVLALRA	9	Unmodified	_ESIVLALRA_					0	0	0			REV__ENSG00000234127|ENST00000454678|TRIM26	REV__ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2819519042969	2	486.297842	970.581131	0.30545	0.00014854	-3.7831	-0.0018397	-3.4777	-0.0016912	486.2963928249854	89.536	0.54734	89.514	89.199	89.746	-0.021645					27	12	3	0	0	0	0.024427	1	11235	11235		34.173	3.6689	1	384280	+		14208	28913	9999	10017	15543	15543					0.09466333339935318
ESIWETESL	9	Unmodified	_ESIWETESL_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.789794921875	2	547.256037	1092.49752	-0.50264	-0.00027507	-2.7305	-0.0014943	-3.2331	-0.0017693	547.2545934611182	63.688	0.5027	63.437	63.192	63.695	-0.25141					20	13	2	0	0	0	0.023417	1	7466	7466		40.778	0	1	212060			14209	2727	10000	10018	15544	15544					-0.04502867618407436
ESKDAPTT	8	Unmodified	_ESKDAPTT_					0	0	0			REV__nc|ENSG00000184792|Q969R2-6|OSBP2	REV__nc|ENSG00000184792|Q969R2-6|OSBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.2186584472656	2	424.70344	847.392327	0.30308	0.00012872	1.2584	0.00053444	1.5615	0.00066316	424.70452621011793	99.293	0.13219	99.125	99.029	99.161	-0.16862					4	2	2	0	0	0	0.027866	1	12291	12291		30.504	14.862	1	14576	+		14210	27702	10001	10019	15545	15545					-0.037473640241955763
ESKESVSHV	9	Unmodified	_ESKESVSHV_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.24920654296875	2	501.248546	1000.48254	0.18901	9.4743E-05	-0.21402	-0.00010728	-0.025002	-1.2532E-05	501.24839527813253	104.99	0.62553	104.98	104.63	105.26	-0.0016022					49	20	3	0	0	0	0.92825	1	13380	13380		30.504	0	1	337750			14211	9340	10002	10020	15546	15546					-0.01768314695743811
ESKESVSHV	9	Unmodified	_ESKESVSHV_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2513732910156	2	501.248546	1000.48254	0.15459	7.7489E-05	0.015416	7.7272E-06	0.17001	8.5216E-05	501.2484261595374	105.37	0.87786	105.2	104.94	105.81	-0.16484					56	31	2	0	0	0	0.94809	1	13119	13119		29.15	2.3535	1	974540			14212	9340	10002	10020	15547	15547					-0.01768314695743811
ESKFGIFGF	9	Unmodified	_ESKFGIFGF_					0	0	0			REV__ENSG00000122965|ENST00000261741|RBM19	REV__ENSG00000122965|ENST00000261741|RBM19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	516.263468	1030.51238	-0.22771	-0.00011756	-4.4724	-0.0023089	-4.7001	-0.0024265	516.261388076094	53.654	0.591	53.456	53.089	53.68	-0.19739					33	16	3	0	0	0	0.023596	1	5644	5644		63.306	19.189	1	633710	+		14213	22671	10003	10021	15548	15548					-0.0016533095977138146
ESKFPLVEV	9	Unmodified	_ESKFPLVEV_					0	0	0			REV__nc|ENSG00000071073|Q9UM21-2|MGAT4A	REV__nc|ENSG00000071073|Q9UM21-2|MGAT4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.8097534179688	2	524.289682	1046.56481	0.037281	1.9546E-05	-0.98938	-0.00051872	-0.9521	-0.00049918	524.2889860288324	55.795	0.82717	55.579	55.447	56.274	-0.21607					26	21	2	0	0	0	0.024374	1	6035	6035		40.778	0	1	315050	+		14214	20444	10004	10022	15549	15549					0.04339207383191024
ESKFVESLN	9	Unmodified	_ESKFVESLN_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7825317382812	2	526.766571	1051.51859	0.37976	0.00020004	-1.6393	-0.00086353	-1.2595	-0.00066349	526.765585000657	49.693	0.67232	49.512	49.191	49.864	-0.18071					34	17	3	0	0	0	0.024381	1	5038	5038		15.642	0	1	477250			14215	2400	10005	10023	15550	15550					-0.005108575188842224
ESKIFYKFQ	9	Unmodified	_ESKIFYKFQ_					0	0	0			REV__ENSG00000180332|ENST00000379108|KCTD4	REV__ENSG00000180332|ENST00000379108|KCTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.8065795898438	2	595.316232	1188.61791	-0.80935	-0.00048182	-0.053611	-3.1915E-05	-0.86296	-0.00051374	595.3162836022269	66.174	0.5157	65.926	65.647	66.162	-0.24839					20	12	2	0	0	0	0.024477	1	7537	7537		35.618	0	1	341320	+		14216	27332	10006	10024	15551	15551					0.031145851658493484
ESKIRVLLQER	11	Unmodified	_ESKIRVLLQER_					0	0	0		nc|ENSG00000072571|O75330-2|HMMR;ENST00000517936.1_1_5:162887680-162896865:+|nuORF	nc|ENSG00000072571|O75330-2|HMMR	nc|ENSG00000072571|O75330-2|HMMR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.60791015625	3	457.608659	1369.80415	0.98273	0.00044971	-2.4741	-0.0011321	-1.4913	-0.00068244	457.6076861640624	98.645	1.9478	98.521	97.849	99.796	-0.12413					135	49	3	0	0	0	1.0855	1	12256	12256		15.337	0.0043666	1	291450			14217	18076	10007	10025	15552	15552					0.13403782334376046
ESKKELAKA	9	Unmodified	_ESKKELAKA_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7539367675781	2	502.292756	1002.57096	-0.29346	-0.00014741	0.4197	0.00021081	0.12624	6.3407E-05	502.29290615687336	26.262	0.66107	26.262	25.912	26.573	0					27	15	3	0	0	0	0.023635	1	1326	1326		56.721	0	1	250980	+		14218	21110	10008	10026	15553	15553					0.06977725614706287
ESKKIFGN	8	Unmodified	_ESKKIFGN_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|11|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|11|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.27496337890625	2	461.753267	921.491981	-1.2239	-0.00056515	-3.3298	-0.0015376	-4.5538	-0.0021027	461.75287586909013	21.308	0.29535	21.095	20.872	21.167	-0.2128					6	5	2	0	0	0	0.027866	1	609	609		38.806	9.6566	1	9957.8	+		14219	36283	10009	10027	15554	15554					0.028094983804408002
ESKKITVIL	9	Unmodified	_ESKKITVIL_					0	0	0		ENST00000547357.5_1_12:82752311-82853681:+|nuORF	ENST00000547357.5_1_12:82752311-82853681:+|nuORF	ENST00000547357.5_1_12:82752311-82853681:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.27099609375	2	515.828975	1029.6434	-0.12876	-6.642E-05	0.43586	0.00022483	0.30709	0.00015841	515.828655248343	49.118	0.5972	48.936	48.631	49.228	-0.18206					36	15	4	0	0	0	0.024389	1	4913	4913		51.193	13.685	1	952550			14220	16529	10010	10028	15555	15555					0.1297605968827611
ESKLQCTPF	9	Unmodified	_ESKLQCTPF_					0	0	0			REV__GLI1|p.V537Sfs*4|1|0.08|ENSG00000111087|chr12:57470341-57470342|-/C|frameshift_variant	REV__GLI1|p.V537Sfs*4|1|0.08|ENSG00000111087|chr12:57470341-57470342|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.765625	2	526.757692	1051.50083	-0.25435	-0.00013398	3.7769	0.0019895	3.5225	0.0018555	526.7584091198917	30.794	0.2944	30.868	30.708	31.002	0.074314					9	6	2	0	0	0	0.024209	1	1963	1963		56.721	24.766	1	58594	+		14221	21893	10011	10029	15556	15556					-0.022858960454186672
ESKLQSFHKI	10	Unmodified	_ESKLQSFHKI_					0	0	0			REV__nc|nan|Q8IXR9-2|C12orf56	REV__nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8374633789062	2	608.837862	1215.66117	-0.10849	-6.605E-05	-1.328	-0.00080854	-1.4365	-0.00087459	608.837007262788	109.69	0.40428	109.68	109.51	109.92	-0.0094986					54	19	4	0	0	0	1.1265	1	13882	13882		24.519	1.4767	1	4069800	+		14222	27754	10012	10030	15557	15557					0.061967749431460106
ESKTKHVF	8	Unmodified	_ESKTKHVF_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.266357421875	2	488.266542	974.51853	1.0291	0.0005025	-1.4884	-0.00072673	-0.45925	-0.00022424	488.2658231759388	19.828	0.77753	19.628	19.405	20.183	-0.2001					44	15	4	0	0	0	0.5947	1	472	472		76.774	10.971	1	2122100			14223	1818;17643	10013	10031	15558	15558					0.030251872717599326
ESKTKHVF	8	Unmodified	_ESKTKHVF_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.26617431640625	2	488.266542	974.51853	1.234	0.00060251	-1.5777	-0.00077032	-0.34368	-0.00016781	488.2657297196723	19.811	0.59101	19.577	19.325	19.916	-0.23345					30	11	4	0	0	0	0.95679	1	455	455		44.117	12.162	1	833970			14224	1818;17643	10013	10031	15559	15559					0.030251872717599326
ESKTSHTLSH	10	Unmodified	_ESKTSHTLSH_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8404541015625	2	563.778002	1125.54145	-0.14294	-8.0587E-05	-1.5954	-0.00089945	-1.7383	-0.00098004	563.7767429924494	58.053	0.65802	58.053	57.91	58.568	0					34	17	3	0	0	0	0.03519	1	6556	6556		29.17	0	1	552000	+		14225	36819	10014	10032	15560	15560					-0.01629838401413508
ESKTSRKSL	9	Unmodified	_ESKTSRKSL_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.26025390625	2	518.293288	1034.57202	0.17324	8.979E-05	3.3497	0.0017361	3.523	0.0018259	518.2949726229981	57.854	0.30833	57.664	57.48	57.789	-0.19018					16	7	3	0	0	0	0.024466	1	6348	6348		24.519	0	1	574820			14226	4720	10015	10033	15561	15561					0.05611939983623415
ESLAADIHKV	10	Unmodified	_ESLAADIHKV_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.26953125	2	541.795663	1081.57677	-1.8606	-0.0010081	2.3406	0.0012681	0.47998	0.00026005	541.7967904186472	37.717	0.53938	37.498	37.104	37.644	-0.21849					17	13	2	0	0	0	0.03519	1	3005	3005		13.454	0	1	127570	+		14227	28205	10016	10034	15562	15562					0.03924824126374915
ESLAKFLN	8	Unmodified	_ESLAKFLN_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.2722473144531	2	461.255643	920.496732	-0.41287	-0.00019044	-2.7096	-0.0012498	-3.1224	-0.0014402	461.25452140268834	61.387	0.45567	61.13	60.968	61.423	-0.25725					18	10	2	0	0	0	0.027866	1	6849	6849		14.865	0	1	112540	+		14228	28150	10017	10035	15563	15563					0.03330382523188291
ESLEDKEYL	9	Unmodified	_ESLEDKEYL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2677001953125	2	563.269144	1124.52373	1.6446	0.00092638	-4.0807	-0.0022985	-2.4361	-0.0013722	563.2665769908557	23.493	1.8958	23.302	23.034	24.93	-0.19117					109	43	5	0	0	0	0.53979	2	909	909;923		56.721	3.6321	1	7792100			14229	7475	10018	10036	15564;15565	15564					-0.03354598446935597
ESLEIGSLP	9	Unmodified	_ESLEIGSLP_					0	0	0			REV__nc|ENSG00000132872|Q9H2B2-2|SYT4	REV__nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2713928222656	2	472.75039	943.486227	-0.4017	-0.0001899	2.8434	0.0013442	2.4417	0.0011543	472.75108165487427	48.28	0.72995	48.182	47.78	48.51	-0.097553					40	19	3	0	0	0	0.024354	1	4756	4756		47.916	10.756	1	906540	+		14230	23326	10019	10037	15566	15566					0.012223550780959158
ESLERALDL	9	Unmodified	_ESLERALDL_					0	0	0		sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8003540039062	2	523.279846	1044.54514	-0.60806	-0.00031819	-4.2437	-0.0022207	-4.8518	-0.0025388	523.7812231170516	48.879	0.53664	48.726	48.469	49.006	-0.15277					16	14	2	0	0	0	0.024427	1	4982	4982		26.693	5.746	1	153000			14231	37952	10020	10038	15567	15567					0.02464831372435583
ESLESLEQV	9	Unmodified	_ESLESLEQV_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2794799804688	2	517.256037	1032.49752	0.24574	0.00012711	-0.97708	-0.0005054	-0.73134	-0.00037829	517.2560356191437	81.907	0.93947	81.678	81.312	82.251	-0.2289					50	21	4	0	0	0	0.024541	1	9923	9923		21.96	6.3181	1	662690	+		14232	25558	10021	10039	15568	15568					-0.017428676184181313
ESLFATGSVL	10	Unmodified	_ESLFATGSVL_					0	0	0		ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2706298828125	2	512.27149	1022.52843	-0.15004	-7.6862E-05	-0.45289	-0.000232	-0.60293	-0.00030886	512.270910752159	104.19	1.4432	104.18	103.73	105.17	-0.0032196					89	40	3	0	0	0	1.0393	1	13333	13333		40.778	1.7567	1	318570			14233	16271	10022	10040	15569	15569					0.018063304864881502
ESLFATGSVL	10	Unmodified	_ESLFATGSVL_					0	0	0		ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2709350585938	2	512.27149	1022.52843	-0.23912	-0.0001225	-0.81194	-0.00041593	-1.0511	-0.00053843	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	1.0781	1	13616	13616		35.618	0.41757	1	6463600			14234	16271	10022	10040	15570	15570					0.018063304864881502
ESLFILSPK	9	Unmodified	_ESLFILSPK_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.323974609375	2	517.30005	1032.58555	1.2139	0.00062793	-0.016316	-8.4402E-06	1.1975	0.00061949	517.2998328231367	63.891	0.89774	63.937	63.475	64.372	0.045502					51	24	3	0	0	0	0.024427	1	7379	7379		26.693	0	1	2067000	+		14235	27298	10023	10041	15571	15571					0.07055797762859584
ESLFTGVLN	9	Unmodified	_ESLFTGVLN_					0	0	0		ENST00000503780.5_2_4:175204968-175219170:+|nuORF;ENST00000505124.5_2_4:175204968-175220231:+|nuORF	ENST00000503780.5_2_4:175204968-175219170:+|nuORF	ENST00000503780.5_2_4:175204968-175219170:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.258544921875	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.94809	1	13365	13365		29.15	6.1071	1	7056700			14236	15700	10024	10042	15572	15572					0.012100613149982564
ESLHTKPEL	9	Unmodified	_ESLHTKPEL_					0	0	0			REV__nc|nan|Q8N5S3-2|C2orf73	REV__nc|nan|Q8N5S3-2|C2orf73	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2842407226562	2	527.282389	1052.55022	-0.34031	-0.00017944	3.5847	0.0018901	3.2444	0.0017107	527.2840719017012	87.562	0.94621	87.384	86.862	87.809	-0.17875					34	22	2	0	0	0	0.024344	1	10594	10594		54.776	0	1	291460	+		14237	27157	10025	10043	15573	15573					0.026051352350577872
ESLIHVPLET	10	Unmodified	_ESLIHVPLET_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7972412109375	2	569.311146	1136.60774	-0.81722	-0.00046525	3.6293	0.0020662	2.8121	0.001601	569.3133939433322	44.591	0.23721	44.487	44.312	44.549	-0.10468					7	5	2	0	0	0	0.03519	1	4181	4181		31.53	3.6476	1	86693			14238	6856	10026	10044	15574	15574					0.044899774406076176
ESLKCAYEAL	10	Unmodified	_ESLKCAYEAL_					0	0	0			REV__ENSG00000119326|ENST00000325551|CTNNAL1	REV__ENSG00000119326|ENST00000325551|CTNNAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.7616577148438	2	563.776082	1125.53761	-0.89702	-0.00050572	3.8126	0.0021495	2.9156	0.0016438	563.7782917010958	45.786	0.20779	45.583	45.425	45.632	-0.20226					6	5	2	0	0	0	0.03519	1	4343	4343		47.657	13.736	1	53433	+		14239	22449	10027	10045	15575	15575					-0.020136442195280324
ESLKMIFGIDV	11	Unmodified	_ESLKMIFGIDV_					0	0	0		chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4;chrX:151913588-151923453|273|224.47|0.32|9.45|+|ENST00000448295|MAGEA4,MAGEA4;chrX:151919037-151923453|272|189.48|0.24|9.62|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|273|225.71|0.33|9.42|+|ENST00000441865|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4	chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	626.3340454101562	2	626.336307	1250.65806	0.057271	3.5871E-05	-2.1308	-0.0013346	-2.0735	-0.0012987	626.3347247762537	86.526	0.78212	86.339	85.991	86.773	-0.18696					40	17	3	0	0	0	0.94988	1	10498	10498		47.96	0.30219	1	488590			14240	439	10028	10046	15576	15576					0.04275763774103325
ESLKMIFGIDV	11	Unmodified	_ESLKMIFGIDV_					0	0	0		chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4;chrX:151913588-151923453|273|224.47|0.32|9.45|+|ENST00000448295|MAGEA4,MAGEA4;chrX:151919037-151923453|272|189.48|0.24|9.62|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|273|225.71|0.33|9.42|+|ENST00000441865|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4	chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	626.336307	1250.65806	-0.19806	-0.00012405	-2.3248	-0.0014561	-2.5229	-0.0015802	626.3347315957868	86.484	0.78056	86.342	86.016	86.796	-0.14217	-0.012802	-1.3859E-05	NaN	47.96	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518250			14241	439	10028	10046							0.04275763774103325
ESLKMIFGIDV	11	Unmodified	_ESLKMIFGIDV_					0	0	0		chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4;chrX:151913588-151923453|273|224.47|0.32|9.45|+|ENST00000448295|MAGEA4,MAGEA4;chrX:151919037-151923453|272|189.48|0.24|9.62|+|ENST00000431971|MAGEA4,MAGEA4;chrX:151914958-151923453|273|225.71|0.33|9.42|+|ENST00000441865|MAGEA4,MAGEA4;ENSG00000147381|ENST00000276344|MAGEA4;chrX:151918356-151923453|256|138.72|0.29|8.92|+|ENST00000360243|MAGEA4,MAGEA4;chrX:151917681-151923453|256|137.34|0.27|9.01|+|ENST00000370335|MAGEA4,MAGEA4;chrX:151917002-151923453|274|227.24|0.36|9.3|+|ENST00000457310|MAGEA4,MAGEA4;chrX:151915637-151923453|256|135.09|0.24|9.12|+|ENST00000370340|MAGEA4,MAGEA4;chrX:151914276-151923453|273|225.02|0.34|9.38|+|ENST00000430273|MAGEA4,MAGEA4	chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4	chrX:151916320-151923453|274|226.54|0.37|9.27|+|ENST00000425182|MAGEA4,MAGEA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	626.336307	1250.65806	0.1186	7.4282E-05	-2.4777	-0.0015519	-2.3591	-0.0014776	626.3344698943886	86.52	0.82108	86.383	86.049	86.87	-0.13734	0.028012	-0.0002054	NaN	47.96	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495170			14242	439	10028	10046							0.04275763774103325
ESLKTKLLYI	10	Unmodified	_ESLKTKLLYI_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3646240234375	2	604.368464	1206.72238	-0.63259	-0.00038232	-2.2075	-0.0013341	-2.8401	-0.0017164	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	1.1195	1	12945	12945		15.642	6.4589	1	4804600	+		14243	22025	10029	10047	15577	15577					0.12728286922560983
ESLLLLMSP	9	Unmodified	_ESLLLLMSP_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7731628417969	2	501.780636	1001.54672	-0.82591	-0.00041443	3.9647	0.0019894	3.1388	0.001575	501.7825204896261	44.337	0.5976	44.232	44.03	44.628	-0.10468					33	15	3	0	0	0	0.024294	1	4106	4106		29.15	0	1	677270			14244	9572	10030	10048	15578	15578					0.04600749136830018
ESLLSTGNVL	10	Unmodified	_ESLLSTGNVL_					0	0	0		ENST00000465181.1_1_3:38170823-38175531:-|nuORF	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7686767578125	2	516.782222	1031.54989	-0.40716	-0.00021041	0.58186	0.00030069	0.17469	9.0279E-05	517.2859997210201	52.1	0.76411	52.1	51.667	52.431	0					36	20	3	0	0	0	0.03519	1	5595	5595		58.23	13.853	1	340330			14245	14774	10031	10049	15579	15579					0.035377155151991246
ESLLSTGNVL	10	Unmodified	_ESLLSTGNVL_					0	0	0		ENST00000465181.1_1_3:38170823-38175531:-|nuORF	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.782222	1031.54989	-1.3375	-0.0006912	3.0367	0.0015693	1.6992	0.00087812	517.2875166997949	51.921	0.48	52.013	51.72	52.2	0.091938	-0.10279	0.00042307	NaN	58.23	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412570			14246	14774	10031	10049							0.035377155151991246
ESLLSTGNVL	10	Unmodified	_ESLLSTGNVL_					0	0	0		ENST00000465181.1_1_3:38170823-38175531:-|nuORF	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.782222	1031.54989	-1.2994	-0.00067151	3.0792	0.0015913	1.7798	0.00091977	517.2858883995115	52.504	1.3891	52.235	51.123	52.513	-0.26903	0.11931	0.00046699	NaN	58.23	39	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208910			14247	14774	10031	10049							0.035377155151991246
ESLMFQEW	8	Unmodified	_ESLMFQEW_					0	0	0			REV__ENST00000342992.10_3_2:179400465-179400825:-|nuORF	REV__ENST00000342992.10_3_2:179400465-179400825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.3154296875	2	535.236593	1068.45863	-1.481	-0.00079269	2.7448	0.0014691	1.2637	0.0006764	535.2379604614099	44.148	0.50321	43.929	43.709	44.212	-0.21939					20	13	2	0	0	0	0.027866	1	4097	4097		38.806	6.8513	1	406080	+		14248	30655	10032	10050	15580	15580					-0.07285871453791515
ESLMMNRL	8	Unmodified	_ESLMMNRL_					0	0	0		ENSG00000114423|ENST00000394030|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;nc|ENSG00000114423|Q13191-3|CBLB	ENSG00000114423|ENST00000394030|CBLB	ENSG00000114423|ENST00000394030|CBLB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.25091552734375	2	497.246437	992.478322	1.168	0.00058079	0.117	5.8177E-05	1.285	0.00063896	497.24642496456283	106.75	0.73323	106.75	106.36	107.09	0					39	23	2	0	0	0	0.96719	1	13708	13708		42.474	1.6963	1	323370			14249	3362	10033	10051	15581	15581					-0.018218187146771925
ESLPFGDNSF	10	Unmodified	_ESLPFGDNSF_					0	0	0		nc|ENSG00000137509|P42785-2|PRCP;ENSG00000137509|ENST00000313010|PRCP	nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7509155273438	2	556.748379	1111.4822	-0.67097	-0.00037356	3.1791	0.00177	2.5081	0.0013964	556.7499653623752	65.193	0.81533	64.939	64.702	65.517	-0.25381					35	19	4	0	0	0	0.03519	1	7398	7398		34.173	8.5985	1	724330			14250	18315	10034	10052	15582	15582					-0.06907734415631239
ESLPKRAVPLR	11	Unmodified	_ESLPKRAVPLR_					0	0	0			REV__nc|ENSG00000130713|Q13868-3|EXOSC2	REV__nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5929260253906	3	422.594461	1264.76155	-0.52617	-0.00022236	-3.6431	-0.0015396	-4.1693	-0.0017619	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	1.0621	1	5173	5173		21.78	0.094677	1	14959000	+		14251	23140	10035	10053	15583	15583					0.13976431996775318
ESLPLPNLKH	10	Unmodified	_ESLPLPNLKH_					0	0	0		SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|26|2|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|26|2|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|26|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.2921752929688	2	574.327131	1146.63971	-0.90511	-0.00051983	1.591	0.00091376	0.68589	0.00039393	574.3282294730504	82.306	0.56482	82.166	81.913	82.478	-0.14014					19	12	2	0	0	0	0.03519	1	9901	9901		25.574	0	1	108390			14252	38024	10036	10054	15584	15584					0.0722538991442434
ESLPPPFLC	9	Unmodified	_ESLPPPFLC_					0	0	0		ENST00000608799.1_1_7:72395184-72395358:-|nuORF	ENST00000608799.1_1_7:72395184-72395358:-|nuORF	ENST00000608799.1_1_7:72395184-72395358:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.79736328125	2	501.751879	1001.4892	-0.52743	-0.00026464	3.2756	0.0016436	2.7482	0.0013789	501.75338333551866	38.783	0.55632	38.684	38.358	38.914	-0.098755					26	14	2	0	0	0	0.024412	1	3237	3237		24.203	0	1	813310			14253	17599	10037	10055	15585	15585					-0.011480930687412183
ESLQHLQHS	9	Unmodified	_ESLQHLQHS_					0	0	0		ENST00000433049.5_1_5:139905610-139905697:+|nuORF	ENST00000433049.5_1_5:139905610-139905697:+|nuORF	ENST00000433049.5_1_5:139905610-139905697:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.76416015625	2	539.767437	1077.52032	-1.9165	-0.0010345	1.5586	0.00084129	-0.3579	-0.00019318	539.7678883779039	49.428	0.4522	49.502	49.316	49.768	0.074192					18	11	2	0	0	0	0.024447	1	5062	5062		40.778	10.275	1	174610			14254	14214	10038	10056	15586	15586					-0.01533803710299253
ESLQVKTQL	9	Unmodified	_ESLQVKTQL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40;ENST00000566703.1_1_16:30776326-30777900:+|nuORF	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2979736328125	2	523.298039	1044.58152	-1.7492	-0.00091535	-3.4602	-0.0018107	-5.2094	-0.0027261	523.2950570466779	51.874	1.3508	51.605	51.203	52.553	-0.26904					80	35	4	0	0	0	0.067814	1	5394	5394		122.18	1.3076	1	7671500			14255	2516	10039	10057	15587	15587					0.06101708269147821
ESLRIQAQF	9	Unmodified	_ESLRIQAQF_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2962036132812	2	546.29583	1090.57711	-0.87742	-0.00047933	0.96953	0.00052965	0.092105	5.0316E-05	546.2962427701868	57.517	0.61776	57.339	57.096	57.714	-0.17775					35	15	3	0	0	0	0.015752	1	6295	6295		158.07	14.188	1	2461900			14256	8408	10040	10058	15588	15588					0.03544243846226891
ESLRIQAQF	9	Unmodified	_ESLRIQAQF_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2952880859375	2	546.29583	1090.57711	-0.98183	-0.00053637	0.88806	0.00048515	-0.093765	-5.1224E-05	546.2962998331574	57.66	0.75407	57.426	57.026	57.78	-0.23363					42	19	3	0	0	0	0.013333	2	6292	6281;6292		176.41	19.202	1	2172400			14257	8408	10040	10058	15589;15590	15590					0.03544243846226891
ESLRNQEPN	9	Unmodified	_ESLRNQEPN_					0	0	0			REV__ENSG00000197157|ENST00000354725|SND1	REV__ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2805786132812	2	543.762352	1085.51015	-1.0573	-0.00057493	-3.7465	-0.0020372	-4.8038	-0.0026121	543.7602711903235	62.271	0.34101	62.094	61.963	62.304	-0.17782					13	8	2	0	0	0	0.024523	1	6997	6997		21.96	9.753	1	194800	+		14258	28273	10041	10059	15591	15591					-0.029184114355075508
ESLRRAQLN	9	Unmodified	_ESLRRAQLN_					0	0	0		AP4E1|p.E307Q|1|0.16|ENSG00000081014|chr15:50934673-50934673|G/C|missense_variant	AP4E1|p.E307Q|1|0.16|ENSG00000081014|chr15:50934673-50934673|G/C|missense_variant	AP4E1|p.E307Q|1|0.16|ENSG00000081014|chr15:50934673-50934673|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2805786132812	2	543.804354	1085.59415	-1.0561	-0.00057431	-4.1042	-0.0022319	-5.1603	-0.0028062	544.3053259931175	62.246	0.46062	62.069	61.883	62.343	-0.17781					15	11	2	0	0	0	0.024427	1	6997	6997		26.693	4.733	1	118540			14259	100	10042	10060	15592	15592					0.05478164452051715
ESLRRAQLN	9	Unmodified	_ESLRRAQLN_					0	0	0		AP4E1|p.E307Q|1|0.16|ENSG00000081014|chr15:50934673-50934673|G/C|missense_variant	AP4E1|p.E307Q|1|0.16|ENSG00000081014|chr15:50934673-50934673|G/C|missense_variant	AP4E1|p.E307Q|1|0.16|ENSG00000081014|chr15:50934673-50934673|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.804354	1085.59415	-1.3123	-0.00071364	-2.0984	-0.0011411	-3.4107	-0.0018548	543.8033079388067	62.016	0.43676	62.016	61.643	62.08	0	-0.057424	0.0016268	NaN	14.137	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190730			14260	100	10042	10060							0.05478164452051715
ESLSALVVDL	10	Unmodified	_ESLSALVVDL_					0	0	0		nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.7793579101562	2	523.292422	1044.57029	-0.32814	-0.00017171	0.69166	0.00036194	0.36351	0.00019022	523.2930926171567	78.391	0.70288	78.407	78.155	78.857	0.015907					21	16	2	0	0	0	0.03519	1	9636	9636		44.377	0	1	118240			14261	5984	10043	10061	15593	15593					0.04978886175013031
ESLSVLVKV	9	Unmodified	_ESLSVLVKV_					0	0	0		ENSG00000124608|ENST00000244571|AARS2;ENST00000491573.1_1_6:44268832-44269153:-|nuORF	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2816162109375	2	487.30005	972.585547	0.057665	2.81E-05	-1.7727	-0.00086382	-1.715	-0.00083572	487.2990281984204	80.926	0.5726	80.78	80.492	81.064	-0.146					21	13	2	0	0	0	0.024344	1	9673	9673		64.207	30.035	1	90399			14262	4063	10044	10062	15594	15594					0.09815797762860257
ESLTELHIV	9	Unmodified	_ESLTELHIV_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7670288085938	2	520.784764	1039.55498	0.23723	0.00012355	-1.3434	-0.00069961	-1.1062	-0.00057607	520.7843589608465	47.594	0.51052	47.407	47.239	47.749	-0.18684					28	13	3	0	0	0	0.024262	1	4683	4683		38.806	18.324	1	441850	+		14263	23629	10045	10063	15595	15595					0.036780193777985914
ESLVKPQAK	9	Unmodified	_ESLVKPQAK_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7691650390625	2	500.295299	998.576045	0.77255	0.0003865	0.31768	0.00015893	1.0902	0.00054544	500.2952155853405	19.581	0.24976	19.381	19.255	19.505	-0.2001					6	4	2	0	0	0	0.024541	1	443	443		19.997	0.89325	1	8980.6			14264	10245	10046	10064	15596	15596					0.07670029477321805
ESLVRKICRHL	11	Unmodified	_ESLVRKICRHL_					0	0	0		nc|ENSG00000182208|Q70IA6|MOB2;ENSG00000182208|ENST00000329957|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.93280029296875	3	451.930968	1352.77107	0.40681	0.00018385	3.3796	0.0015273	3.7864	0.0017112	451.93241469583455	98.661	2.0539	98.671	97.815	99.869	0.010239					182	47	5	0	0	0	1.0621	1	12599	12599		21.78	0	1	1634100			14265	9113	10047	10065	15597	15597					0.10879877010688688
ESLVRKICRHL	11	Unmodified	_ESLVRKICRHL_					0	0	0		nc|ENSG00000182208|Q70IA6|MOB2;ENSG00000182208|ENST00000329957|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9328918457031	3	451.930968	1352.77107	-0.033264	-1.5033E-05	3.7241	0.001683	3.6908	0.001668	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0621	1	12197	12197		21.78	0.74819	1	1141700			14266	9113	10047	10065	15598	15598					0.10879877010688688
ESLWHLWL	8	Unmodified	_ESLWHLWL_					0	0	0			REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF	REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2794189453125	2	542.284734	1082.55492	-0.41099	-0.00022288	3.6864	0.0019991	3.2755	0.0017762	542.2868603449733	61.496	0.81679	61.282	60.92	61.737	-0.21375					23	13	3	0	0	0	0.027866	1	6919	6919		44.531	11.015	1	223730	+		14267	33181	10048	10066	15599	15599					0.01694064168486875
ESMHLLLIGA	10	Unmodified	_ESMHLLLIGA_					0	0	0			REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.280517578125	2	542.296985	1082.57942	-0.50269	-0.00027261	-0.11648	-6.3165E-05	-0.61916	-0.00033577	542.2958073983192	62.007	0.6601	61.793	61.584	62.244	-0.21375					29	16	3	0	0	0	0.03519	1	7002	7002		35.618	5.3006	1	420880	+		14268	20323	10049	10067	15600	15600					0.041429562596931646
ESMIFGSGSSL	11	Unmodified	_ESMIFGSGSSL_					0	0	0			REV__ENSG00000170801|ENST00000307358|HTRA3	REV__ENSG00000170801|ENST00000307358|HTRA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.3428344726562	2	557.757889	1113.50123	0.28213	0.00015736	-3.4638	-0.0019319	-3.1816	-0.0017746	557.7548605829643	67.427	0.44203	67.45	67.27	67.712	0.023911					21	10	3	0	0	0	0.024778	1	7944	7944		52.937	15.778	1	143760	+		14269	26506	10050	10068	15601	15601					-0.05098521116201482
ESMIFGSGSSL	11	Unmodified	_ESMIFGSGSSL_					0	0	0			REV__ENSG00000170801|ENST00000307358|HTRA3	REV__ENSG00000170801|ENST00000307358|HTRA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.757889	1113.50123	0.035269	1.9672E-05	-4.7096	-0.0026268	-4.6743	-0.0026071	557.7547626135292	67.38	0.44112	67.38	67.165	67.606	0	-0.035294	-0.00055474	NaN	52.937	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118600	+		14270	26506	10050	10068							-0.05098521116201482
ESMVFESLV	9	Unmodified	_ESMVFESLV_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.7662963867188	2	520.752075	1039.4896	-1.1379	-0.00059258	-3.1904	-0.0016614	-4.3283	-0.002254	520.7506880347954	47.382	0.46058	47.441	47.247	47.708	0.059097					21	13	2	0	0	0	0.023417	1	4690	4690		68.787	5.4806	1	680950	+		14271	25144	10051	10069	15602	15602					-0.028567181395374064
ESNDEDAVEL	10	Unmodified	_ESNDEDAVEL_					0	0	0			REV__nc|ENSG00000164164|Q01804-4|OTUD4	REV__nc|ENSG00000164164|Q01804-4|OTUD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.7360229492188	2	560.735665	1119.45678	0.43168	0.00024206	0.66616	0.00037354	1.0978	0.0006156	560.7357323266651	88.351	0.76981	88.369	88.028	88.798	0.018555					43	17	4	0	0	0	0.69662	1	11072	11072		67.494	5.3863	1	525060	+		14272	25709	10052	10070	15603	15603					-0.09817253728715514
ESNDHMLSV	9	Unmodified	_ESNDHMLSV_					0	0	0		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.27978515625	2	516.226756	1030.43896	-0.83478	-0.00043094	-0.72313	-0.0003733	-1.5579	-0.00080424	516.7276934939841	55.252	0.13682	55.106	54.986	55.123	-0.14609					5	3	2	0	0	0	0.018983	1	5914	5914		93.195	13.483	1	73812			14273	18245	10053	10071	15604	15604					-0.07504247464544278
ESNDHMLSV	9	Unmodified	_ESNDHMLSV_					0	0	0		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2794189453125	2	516.226756	1030.43896	-0.091655	-4.7315E-05	-4.1707	-0.002153	-4.2624	-0.0022003	516.2223290870267	55.388	0.19075	55.157	55.032	55.222	-0.23087					10	5	3	0	0	0	0.019502	1	5932	5932		99.375	11.621	1	78046			14274	18245	10053	10071	15605	15605					-0.07504247464544278
ESNEEEKIT	9	Unmodified	_ESNEEEKIT_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.295166015625	2	539.748576	1077.4826	-0.12557	-6.7774E-05	-0.23216	-0.00012531	-0.35773	-0.00019308	540.2501649330711	81.289	0.45378	81.06	80.776	81.229	-0.2289					13	10	2	0	0	0	0.024523	1	9730	9730		21.96	1.013	1	65847	+		14275	21180	10054	10072	15606	15606					-0.05304359486422072
ESNEVVHLE	9	Unmodified	_ESNEVVHLE_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8064575195312	2	528.253828	1054.4931	-0.22819	-0.00012054	1.5824	0.0008359	1.3542	0.00071536	528.2544640822986	49.9	0.63561	49.981	49.775	50.41	0.08099					30	18	2	0	0	0	0.023842	1	5093	5093		87.696	13.441	1	885780			14276	5028	10055	10073	15607	15607					-0.03196332041329697
ESNEVVHLE	9	Unmodified	_ESNEVVHLE_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.253828	1054.4931	-0.17059	-9.0116E-05	3.6383	0.001922	3.4677	0.0018318	528.2553720001448	50.414	0.41375	50.135	49.953	50.367	-0.27977	0.080408	0.0016412	NaN	72.879	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120450			14277	5028	10055	10073							-0.03196332041329697
ESNLLQTQL	9	Unmodified	_ESNLLQTQL_					0	0	0			REV__BACH2|p.G139D|1|0.17|ENSG00000112182|chr6:89951690-89951690|C/T|missense_variant	REV__BACH2|p.G139D|1|0.17|ENSG00000112182|chr6:89951690-89951690|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2982177734375	2	523.279846	1044.54514	-0.8253	-0.00043186	1.8128	0.00094858	0.98747	0.00051672	523.2810126738948	52.151	0.56693	52.032	51.833	52.4	-0.11876					25	14	3	0	0	0	0.020937	1	5372	5372		77.318	0	1	331780	+		14278	19196	10056	10074	15608	15608					0.02464831372435583
ESNRVISL	8	Unmodified	_ESNRVISL_					0	0	0		ENST00000583328.5_1_17:18210081-18218056:-|nuORF	ENST00000583328.5_1_17:18210081-18218056:-|nuORF	ENST00000583328.5_1_17:18210081-18218056:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2278747558594	2	459.256174	916.497795	-0.4776	-0.00021934	1.6854	0.00077401	1.2078	0.00055467	459.2564831889099	25.254	0.47513	25.254	25.094	25.569	0					12	11	2	0	0	0	0.027866	1	1213	1213		71.296	32.49	1	58034			14279	17194	10057	10075	15609	15609					0.03620596892096728
ESPALILLF	9	Unmodified	_ESPALILLF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7973327636719	2	501.797143	1001.57973	-1.2026	-0.00060344	1.2291	0.00061675	0.026531	1.3313E-05	501.7976510507207	38.787	0.92343	38.814	38.429	39.353	0.027275					64	24	5	0	0	0	0.96855	1	3212	3212		26.796	0.10319	1	5430000			14280	6501	10058	10076	15610	15610					0.07900699251194965
ESPASSGPRV	10	Unmodified	_ESPASSGPRV_					0	0	0		ENST00000355202.8_1_19:38210240-38210417:-|nuORF	ENST00000355202.8_1_19:38210240-38210417:-|nuORF	ENST00000355202.8_1_19:38210240-38210417:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7720031738281	2	493.748713	985.482873	-0.60163	-0.00029705	-0.31787	-0.00015695	-0.9195	-0.000454	493.748571689963	33.376	0.7972	33.382	33.043	33.84	0.0066261					35	21	2	0	0	0	0.03519	1	2350	2350		49.536	20.366	1	293600			14281	12641	10059	10077	15611	15611					-0.010448949758938397
ESPGDPGTASP	11	Unmodified	_ESPGDPGTASP_					0	0	0		nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6	nc|ENSG00000181704|Q96EC8-2|YIPF6	nc|ENSG00000181704|Q96EC8-2|YIPF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.30780029296875	2	507.722361	1013.43017	-0.44007	-0.00022343	-0.10932	-5.5506E-05	-0.54939	-0.00027894	507.7221787873027	43.64	0.66301	43.535	43.226	43.889	-0.10468					45	15	4	0	0	0	0.024502	1	3976	3976		58.23	10.573	1	1315100			14282	9062	10060	10078	15612	15612					-0.07600897829377118
ESPGEPRHH	9	Unmodified	_ESPGEPRHH_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;chr15:53523322-53540975|373|28.44|0.17|7.37|-|ENST00000614174|WDR72,WDR72	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8010864257812	2	523.244129	1044.47371	1.9566	0.0010238	-1.8384	-0.00096194	0.1182	6.1847E-05	523.2427410789778	19.832	0.33152	19.898	19.735	20.067	0.066195					8	6	2	0	0	0	0.024436	1	412	412		23.042	0	1	21217			14283	7554	10061	10079	15613	15613					-0.04675243541578311
ESPIIDEPLV	10	Unmodified	_ESPIIDEPLV_					0	0	0			REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.7315063476562	2	556.297704	1110.58086	0.19181	0.0001067	-2.1735	-0.0012091	-1.9817	-0.0011024	556.2968708877805	32.043	1.1447	31.851	31.512	32.657	-0.19261					36	26	2	0	0	0	0.03519	1	2244	2244		32.812	3.6629	1	133980	+		14284	22128	10062	10080	15614	15614					0.02998868829422463
ESPIRIWTV	9	Unmodified	_ESPIRIWTV_					0	0	0			REV__nc|ENSG00000169918|Q8TE49|OTUD7A	REV__nc|ENSG00000169918|Q8TE49|OTUD7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.8040771484375	2	550.808574	1099.60259	-0.016073	-8.853E-06	1.323	0.0007287	1.3069	0.00071985	550.8085538532129	57.908	0.86264	57.717	57.008	57.871	-0.19018					36	22	2	0	0	0	0.024511	1	6301	6301		19.104	0	1	1761700	+		14285	26417	10063	10081	15615	15615					0.056777183686335775
ESPKNLVIN	9	Unmodified	_ESPKNLVIN_					0	0	0		ENSG00000113905|ENST00000232003|HRG	ENSG00000113905|ENST00000232003|HRG	ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.28839111328125	2	507.284931	1012.55531	-0.49813	-0.00025269	-0.25439	-0.00012905	-0.75252	-0.00038174	507.28465405807117	30.64	1.3119	30.715	30.42	31.732	0.074314					59	31	2	0	0	0	0.34489	1	1945	1945		69.628	0	1	1703300			14286	3333	10064	10082	15616	15616					0.04953439097664614
ESPKQTLKT	9	Unmodified	_ESPKQTLKT_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2745361328125	2	516.290214	1030.56587	-0.60622	-0.00031299	-0.42442	-0.00021912	-1.0306	-0.00053211	516.2901913477901	45.381	1.2378	45.232	44.901	46.139	-0.1488					75	35	4	0	0	0	0.024261	1	4354	4354		37.812	0	1	19585000	+		14287	23169	10065	10083	15617	15617					0.05181421752104143
ESPKVEFGPK	10	Unmodified	_ESPKVEFGPK_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1	REV__ENSG00000111676|ENST00000396684|ATN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.268798828125	2	559.298039	1116.58152	-0.47109	-0.00026348	-1.9752	-0.0011047	-2.4463	-0.0013682	559.2968687504763	32.518	0.7682	32.361	32.079	32.847	-0.15772					36	18	4	0	0	0	0.03519	1	2297	2297		24.519	2.5593	1	672810	+		14288	21937	10066	10084	15618	15618					0.027897082691424657
ESPKVEFGPK	10	Unmodified	_ESPKVEFGPK_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1	REV__ENSG00000111676|ENST00000396684|ATN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.298039	1116.58152	-0.17073	-9.5487E-05	-2.0051	-0.0011214	-2.1758	-0.0012169	559.2967864782429	32.576	0.49182	32.339	32.13	32.622	-0.23666	-0.056373	0.00016087	NaN	31.634	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601760	+		14289	21937	10066	10084							0.027897082691424657
ESPKVEFGPK	10	Unmodified	_ESPKVEFGPK_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1	REV__ENSG00000111676|ENST00000396684|ATN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.298039	1116.58152	0.32273	0.0001805	-2.5961	-0.001452	-2.2734	-0.0012715	559.2964585646446	32.679	0.57359	32.486	32.205	32.779	-0.19261	0.090973	-0.00050023	NaN	31.634	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452530	+		14290	21937	10066	10084							0.027897082691424657
ESPLDKAAR	9	Unmodified	_ESPLDKAAR_					0	0	0			REV__SETD2-CCDC12|3|fusion	REV__SETD2-CCDC12|3|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7842102050781	2	493.766906	985.519259	-0.28363	-0.00014005	-0.79942	-0.00039473	-1.083	-0.00053477	493.76679960499683	58.044	0.10353	58.135	58.084	58.188	0.091217					4	2	2	0	0	0	0.018452	1	6479	6479		98.629	18.917	1	60644	+		14291	37479	10067	10085	15619	15619					0.025919819208070294
ESPLPITELI	10	Unmodified	_ESPLPITELI_					0	0	0			REV__MAPK15|p.P236L|1|0.46|ENSG00000181085|chr8:143719468-143719468|C/T|missense_variant	REV__MAPK15|p.P236L|1|0.46|ENSG00000181085|chr8:143719468-143719468|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.8084106445312	2	556.315897	1110.61724	0.29817	0.00016588	-0.21429	-0.00011921	0.083882	4.6665E-05	556.316234858761	64.514	0.70837	64.559	64.117	64.825	0.045502					63	18	6	0	0	0	0.03519	1	7551	7551		56.721	34.141	1	1014400	+		14292	36353	10068	10086	15620	15620					0.06635745726134701
ESPLPITELI	10	Unmodified	_ESPLPITELI_					0	0	0			REV__MAPK15|p.P236L|1|0.46|ENSG00000181085|chr8:143719468-143719468|C/T|missense_variant	REV__MAPK15|p.P236L|1|0.46|ENSG00000181085|chr8:143719468-143719468|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.315897	1110.61724	0.31314	0.00017421	0.11611	6.4593E-05	0.42925	0.0002388	556.316177504299	64.447	0.70078	64.447	64.062	64.763	0	-0.058038	-5.6032E-05	NaN	56.721	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	983120	+		14293	36353	10068	10086							0.06635745726134701
ESPLPITELI	10	Unmodified	_ESPLPITELI_					0	0	0			REV__MAPK15|p.P236L|1|0.46|ENSG00000181085|chr8:143719468-143719468|C/T|missense_variant	REV__MAPK15|p.P236L|1|0.46|ENSG00000181085|chr8:143719468-143719468|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	556.315897	1110.61724	-1.195	-0.00066478	1.347	0.00074938	0.15207	8.46E-05	556.3170098186317	64.771	0.74649	64.509	64.012	64.758	-0.2626	0.0036104	0.0013135	NaN	56.721	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780230	+		14294	36353	10068	10086							0.06635745726134701
ESPPASTKEK	10	Unmodified	_ESPPASTKEK_					0	0	0			REV__ENSG00000114923|ENST00000358055|SLC4A3	REV__ENSG00000114923|ENST00000358055|SLC4A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7933349609375	2	537.277303	1072.54005	-1.012	-0.00054374	3.4787	0.0018691	2.4667	0.0013253	537.2791528953834	24.673	0.70576	24.673	24.429	25.135	0					35	15	4	0	0	0	0.03519	1	1137	1137		31.53	8.4873	1	955520	+		14295	22155	10069	10087	15621	15621					0.006685275098107013
ESPPLHSF	8	Unmodified	_ESPPLHSF_					0	0	0		ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|22|2|anti-sense	ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|22|2|anti-sense	ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|22|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.22332763671875	2	457.224342	912.434132	0.023783	1.0874E-05	-4.1221	-0.0018847	-4.0983	-0.0018739	457.2223848247956	101.18	0.86569	101.19	100.87	101.74	0.0090332					43	19	3	0	0	0	1.0574	1	12916	12916		26.796	0	1	440660			14296	18931	10070	10088	15622	15622					-0.025587635449937807
ESPQGLKSNL	10	Unmodified	_ESPQGLKSNL_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.328125	2	536.785296	1071.55604	-1.365	-0.00073273	0.64845	0.00034808	-0.71659	-0.00038465	536.7855322480181	43.85	0.60585	43.705	43.388	43.994	-0.14471					44	16	4	0	0	0	0.03519	1	4132	4132		62.107	1.9892	1	832660			14297	9482	10071	10089	15623	15623					0.023122337467157195
ESPTLLCVAL	10	Unmodified	_ESPTLLCVAL_					0	0	0		ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	ENSG00000179639|ENST00000693622|FCER1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3036499023438	2	523.283543	1044.55253	-1.6685	-0.00087308	-1.9486	-0.0010197	-3.6171	-0.0018927	523.282384886326	90.408	0.71268	90.408	90.133	90.845	0					32	16	3	0	0	0	0.03519	1	11392	11392		35.618	17.294	1	413780			14298	8914	10072	10090	15624	15624					0.03203847648478586
ESPTRSLIM	9	Oxidation (M)	_ESPTRSLIM(Oxidation (M))_		ESPTRSLIM(1)		ESPTRSLIM(91)	0	0	1		nc|ENSG00000185053|Q96LD1|SGCZ;ENSG00000185053|ENST00000382080|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2667236328125	2	525.268424	1048.5223	0.42564	0.00022358	-3.4707	-0.001823	-3.045	-0.0015995	525.266294228485	83.721	1.2826	83.509	82.79	84.073	-0.21159					62	28	4	0	0	0	0.18915	1	10096	10096		90.777	11.064	1	980620			14299	9405	10073	10091	15625	15625		392			-2.511016714379366E-05
ESPTRSLIM	9	Oxidation (M)	_ESPTRSLIM(Oxidation (M))_		ESPTRSLIM(1)		ESPTRSLIM(96)	0	0	1		nc|ENSG00000185053|Q96LD1|SGCZ;ENSG00000185053|ENST00000382080|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2673950195312	2	525.268424	1048.5223	0.31642	0.00016621	-2.772	-0.001456	-2.4556	-0.0012898	525.2663804263314	83.7	1.6244	83.561	82.995	84.619	-0.1386					96	37	6	0	0	0	0.16468	1	10084	10084		96.19	16.739	1	901040			14300	9405	10073	10091	15626	15626		392			-2.511016714379366E-05
ESPWAWLAED	10	Unmodified	_ESPWAWLAED_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	601.27734375	2	602.269478	1202.5244	0.24584	0.00014806	0.79865	0.000481	1.0445	0.00062907	602.2702907090209	84.343	0.73125	84.185	83.757	84.488	-0.15868					26	16	2	0	0	0	0.03519	1	10211	10211		51.335	19.701	1	170900	+		14301	23310	10074	10092	15627	15627					-0.06875759007243687
ESQDNDQPDYD	11	Unmodified	_ESQDNDQPDYD_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;ENST00000547694.2_1_12:110390821-110397718:-|nuORF;ENST00000549999.1_1_12:110386630-110391055:-|nuORF	nc|ENSG00000139436|Q14161-10|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.4972229003906	3	442.496988	1324.46913	-0.61158	-0.00027062	1.1705	0.00051796	0.55897	0.00024734	442.4974709686598	29.307	0.68203	29.134	28.893	29.575	-0.17258					28	15	2	0	0	0	0.94885	1	1782	1782		48.188	9.4344	1	1273600			14302	18329	10075	10093	15628	15628					-0.18012262056299733
ESQDNDQPDYD	11	Unmodified	_ESQDNDQPDYD_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;ENST00000547694.2_1_12:110390821-110397718:-|nuORF;ENST00000549999.1_1_12:110386630-110391055:-|nuORF	nc|ENSG00000139436|Q14161-10|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.4973449707031	3	442.496988	1324.46913	-0.011868	-5.2516E-06	0.39598	0.00017522	0.38412	0.00016997	442.4971698340536	29.113	0.63699	28.963	28.7	29.337	-0.14952					42	14	4	0	0	0	0.97559	1	1734	1734		42.243	0.81596	1	1106400			14303	18329	10075	10093	15629	15629					-0.18012262056299733
ESQDNDQPDYD	11	Unmodified	_ESQDNDQPDYD_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;ENST00000547694.2_1_12:110390821-110397718:-|nuORF;ENST00000549999.1_1_12:110386630-110391055:-|nuORF	nc|ENSG00000139436|Q14161-10|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	442.496988	1324.46913	-1.0666	-0.00047195	1.6187	0.00071626	0.55213	0.00024431	442.4977112553458	29.452	0.68696	29.207	28.924	29.611	-0.24524	0.10511	0.00067044	NaN	48.188	44	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1102500			14304	18329	10075	10093							-0.18012262056299733
ESQERNLL	8	Unmodified	_ESQERNLL_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.78204345703125	2	494.756538	987.498523	-0.15297	-7.5681E-05	-4.2439	-0.0020997	-4.3968	-0.0021754	494.7535929841884	66.388	0.38493	66.107	65.788	66.173	-0.28149					11	9	2	0	0	0	0.027866	1	7836	7836		30.504	4.9296	1	88421			14305	6567	10076	10094	15630	15630					0.004273915411431517
ESQFKAQGR	9	Unmodified	_ESQFKAQGR_					0	0	0		ENST00000550858.1_1_12:42681771-42682359:+|nuORF	ENST00000550858.1_1_12:42681771-42682359:+|nuORF	ENST00000550858.1_1_12:42681771-42682359:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2747802734375	2	525.76998	1049.52541	-0.2382	-0.00012524	0.12516	6.5807E-05	-0.11304	-5.9432E-05	525.7696377190431	34.178	1.1044	33.953	33.68	34.785	-0.22412					73	27	5	0	0	0	0.75397	1	2549	2549		42.396	1.618	1	9560100			14306	16592	10077	10095	15631	15631					0.0026250015232562873
ESQFVLQLR	9	Unmodified	_ESQFVLQLR_					0	0	0		ENSG00000152578|ENST00000282499|GRIA4;nc|ENSG00000152578|P48058-2|GRIA4;ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENSG00000152578|ENST00000282499|GRIA4	ENSG00000152578|ENST00000282499|GRIA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.2546997070312	2	560.31148	1118.60841	-0.83296	-0.00046672	1.7955	0.001006	0.96255	0.00053933	560.3124224289182	64.49	0.36723	64.228	64.012	64.379	-0.2626					14	9	3	0	0	0	0.024405	1	7536	7536		44.117	1.7207	1	59885			14307	6281	10078	10096	15632	15632					0.053848168803369845
ESQHFGRVP	9	Unmodified	_ESQHFGRVP_					0	0	0			REV__ENST00000434982.2_1_5:55407235-55412649:-|nuORF	REV__ENST00000434982.2_1_5:55407235-55412649:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3109741210938	2	528.764697	1055.51484	-0.51074	-0.00027006	0.35001	0.00018507	-0.16073	-8.4989E-05	528.7644720054259	60.605	0.44782	60.399	60.172	60.62	-0.20599					14	10	2	0	0	0	0.024436	1	6779	6779		23.042	0	1	189270	+		14308	30626	10079	10097	15633	15633					-0.010694825020891585
ESQIKSLNL	9	Unmodified	_ESQIKSLNL_					0	0	0			REV__ENSG00000149231|ENST00000646818|CCDC82	REV__ENSG00000149231|ENST00000646818|CCDC82	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2745971679688	2	516.290214	1030.56587	-0.6603	-0.00034091	-0.53204	-0.00027469	-1.1923	-0.00061559	516.2901474256729	45.261	1.4086	45.261	44.934	46.343	0					92	40	5	0	0	0	0.024367	1	4349	4349		36.447	0	1	19265000	+		14309	24661	10080	10098	15634	15634					0.051814217520814054
ESQLKDNPA	9	Unmodified	_ESQLKDNPA_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.24884033203125	2	501.248546	1000.48254	0.28832	0.00014452	-0.24033	-0.00012046	0.047998	2.4059E-05	501.2483733429364	104.84	0.69293	104.84	104.5	105.19	0					54	22	3	0	0	0	0.84115	1	13461	13461		36.447	2.5251	1	339730			14310	5885	10081	10099	15635	15635					-0.017683146957665485
ESQLKDNPA	9	Unmodified	_ESQLKDNPA_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2489318847656	2	501.248546	1000.48254	0.18901	9.4743E-05	-0.21402	-0.00010728	-0.025002	-1.2532E-05	501.24839527813253	104.99	0.62553	104.98	104.63	105.26	-0.0016022					49	20	3	0	0	0	0.67687	2	13390	13390;13400		47.657	5.2612	1	337750			14311	5885	10081	10099	15636;15637	15636					-0.017683146957665485
ESQLRRAL	8	Unmodified	_ESQLRRAL_					0	0	0		ENST00000169298.7_1_3:186648348-186681651:+|nuORF;ENST00000463542.1_1_3:186660174-186681648:+|nuORF;ENST00000430309.5_1_3:186648886-186681648:+|nuORF	ENST00000169298.7_1_3:186648348-186681651:+|nuORF	ENST00000169298.7_1_3:186648348-186681651:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2911376953125	2	486.78289	971.551228	0.40056	0.00019499	1.6027	0.00078015	2.0032	0.00097514	486.78378127041253	94.4	0.58521	94.278	94.099	94.685	-0.12215					20	13	2	0	0	0	0.027866	1	11616	11616		20.482	0	1	117220			14312	11114	10082	10100	15638	15638					0.06431394394610379
ESQNADFCCE	10	Unmodified	_ESQNADFCCE_					0	0	0			REV__ADAM10|p.P490S|1|0.44|ENSG00000137845|chr15:58621514-58621514|G/A|missense_variant	REV__ADAM10|p.P490S|1|0.44|ENSG00000137845|chr15:58621514-58621514|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.197265625	2	573.197338	1144.38012	-0.13566	-7.7762E-05	0.045019	2.5805E-05	-0.090644	-5.1957E-05	573.1972119067755	33.002	0.97461	32.771	32.423	33.397	-0.23107					63	23	4	0	0	0	1.0236	1	2305	2305		42.864	0.46813	1	2951600	+		14313	19060	10083	10101	15639	15639					-0.18629091821185284
ESQQKLRL	8	Unmodified	_ESQQKLRL_					0	0	0			REV__ENSG00000002834|ENST00000318008|LASP1	REV__ENSG00000002834|ENST00000318008|LASP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	501.290548	1000.56654	-0.41083	-0.00020595	0.019509	9.7795E-06	-0.39133	-0.00019617	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	1.0574	1	10494	10494		23.042	1.0826	1	2038300	+		14314	19767	10084	10102	15640	15640					0.06628261191792717
ESQRMVLTV	9	Unmodified	_ESQRMVLTV_					0	0	0		ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2874145507812	2	531.784241	1061.55393	0.028414	1.511E-05	-1.558	-0.00082851	-1.5296	-0.0008134	532.2870909917095	71.85	0.96747	71.575	71.188	72.155	-0.2751					37	21	2	0	0	0	0.80003	1	8392	8392		39.253	0.44669	1	3107700			14315	4772	10085	10103	15641	15641					0.025614817372343168
ESQVVEMHT	9	Unmodified	_ESQVVEMHT_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2413940429688	2	530.242406	1058.47026	-0.19716	-0.00010454	-2.4111	-0.0012785	-2.6082	-0.001383	530.2411262868674	110.27	0.52114	110.26	110.01	110.53	-0.0094986					32	20	3	0	0	0	0.92825	1	13942	13942		30.504	0.18592	1	127610			14316	4266	10086	10104	15642	15642					-0.05663674430456922
ESRALAELF	9	Unmodified	_ESRALAELF_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.2789916992188	2	518.277106	1034.53966	-1.2076	-0.0006259	-0.12595	-6.5279E-05	-1.3336	-0.00069118	518.2771423187905	61.959	0.76851	61.959	61.453	62.222	0					79	20	6	0	0	0	0.67687	1	7175	7175		47.657	4.7931	1	11196000	+		14317	22020	10087	10105	15643	15643					0.023771525806068894
ESRARHGGAR	10	Unmodified	_ESRARHGGAR_					0	0	0			REV__ENST00000274498.8_1_5:142150079-142150367:+|nuORF	REV__ENST00000274498.8_1_5:142150079-142150367:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2703857421875	2	548.78957	1095.56459	-0.29566	-0.00016226	0.83106	0.00045608	0.5354	0.00029382	548.7897330963233	38.959	0.61254	38.733	38.483	39.096	-0.2257					27	16	2	0	0	0	0.03519	1	3251	3251		23.523	0	1	262950	+		14318	29832	10088	10106	15644	15644					0.020626452265560147
ESREAVPER	9	Unmodified	_ESREAVPER_					0	0	0			REV__nc|ENSG00000011523|Q76N32-2|CEP68	REV__nc|ENSG00000011523|Q76N32-2|CEP68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7548217773438	2	536.772719	1071.53089	-1.0398	-0.00055814	-1.4852	-0.00079721	-2.525	-0.0013553	537.2736607884965	38.587	0.70535	38.365	38.153	38.858	-0.22149					35	18	3	0	0	0	0.024466	1	3183	3183		31.53	0	1	207540	+		14319	19934	10089	10107	15645	15645					-0.002018210558617284
ESRGNNQW	8	Unmodified	_ESRGNNQW_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2477233-2477596:+|nuORF	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.29736328125	2	495.72303	989.431506	0.59299	0.00029396	1.7448	0.00086496	2.3378	0.0011589	495.72387504343124	54.585	0.41654	54.379	54.051	54.468	-0.20613					18	10	2	0	0	0	0.027866	1	5777	5777		7.1934	0	1	211640			14320	2091	10090	10108	15646	15646					-0.06363218949945804
ESRHRPPGR	9	Unmodified	_ESRHRPPGR_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3164672851562	2	546.294488	1090.57442	-0.32529	-0.00017771	-1.8546	-0.0010131	-2.1799	-0.0011908	546.2936622990497	87.282	0.63067	87.104	86.903	87.534	-0.17874					25	14	2	0	0	0	0.024447	1	10657	10657		19.104	0	1	199200	+		14321	26058	10091	10109	15647	15647					0.032758332319417605
ESRICDKSKI	10	Unmodified	_ESRICDKSKI_					0	0	0			REV__ENST00000426163.5_1_2:208030425-208030898:-|nuORF	REV__ENST00000426163.5_1_2:208030425-208030898:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.8153686523438	2	589.81353	1177.61251	-1.2212	-0.00072031	2.7974	0.0016499	1.5761	0.00092963	589.8149818306446	100.66	0.71844	100.66	100.4	101.12	0					27	16	2	0	0	0	0.45418	1	12886	12886		93.143	2.7734	1	192230	+		14322	32267	10092	10110	15648	15648					0.0308053831174675
ESRICDKSKI	10	Unmodified	_ESRICDKSKI_					0	0	0			REV__ENST00000426163.5_1_2:208030425-208030898:-|nuORF	REV__ENST00000426163.5_1_2:208030425-208030898:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	589.81353	1177.61251	-1.2212	-0.00072031	2.7974	0.0016499	1.5761	0.00092963	589.8149818306446	100.66	0.71844	100.66	100.4	101.12	0	-0.057735	0.00078737	NaN	93.143	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192230	+		14323	32267	10092	10110							0.0308053831174675
ESRICDKSKI	10	Unmodified	_ESRICDKSKI_					0	0	0			REV__ENST00000426163.5_1_2:208030425-208030898:-|nuORF	REV__ENST00000426163.5_1_2:208030425-208030898:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	589.81353	1177.61251	0.85755	0.00050579	0.59113	0.00034866	1.4487	0.00085445	590.3158293545101	100.79	0.5705	100.78	100.58	101.15	-0.0054474	0.057735	-0.0018152	NaN	93.143	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179430	+		14324	32267	10092	10110							0.0308053831174675
ESRKENEEW	9	Unmodified	_ESRKENEEW_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.8397216796875	2	603.772916	1205.53128	-0.095585	-5.7712E-05	3.0578	0.0018462	2.9622	0.0017885	603.7747887088751	79.967	0.62453	79.818	79.53	80.155	-0.14897					22	14	2	0	0	0	0.024515	1	9610	9610		14.865	0	1	236510			14325	4974	10093	10111	15649	15649					-0.06326446126672636
ESRLCLLWS	9	Unmodified	_ESRLCLLWS_					0	0	0			REV__ENST00000496239.5_1_1:16776277-16776712:+|nuORF	REV__ENST00000496239.5_1_1:16776277-16776712:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7747802734375	2	553.786784	1105.55902	0.095361	5.281E-05	-0.14095	-7.8056E-05	-0.045589	-2.5246E-05	553.7868840482533	57.579	0.52631	57.389	57.148	57.674	-0.19018					22	13	2	0	0	0	0.024381	1	6315	6315		37.159	0	1	273650	+		14326	33819	10094	10112	15650	15650					0.010457855998993182
ESRNAGSNTAY	11	Unmodified	_ESRNAGSNTAY_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2622680664062	2	585.262716	1168.51088	-0.97172	-0.00056871	0.46218	0.00027049	-0.50954	-0.00029822	585.2629390186464	26.291	1.4985	26.055	25.843	27.341	-0.23603					113	38	4	0	0	0	0.87596	1	1375	1375		53.089	0	1	5115100			14327	3287	10095	10113	15651	15651					-0.06663616786477178
ESRNAGSNTAY	11	Unmodified	_ESRNAGSNTAY_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	585.262716	1168.51088	-1.6477	-0.00096435	-2.9054	-0.0017004	-4.5531	-0.0026647	585.2603874221785	26.144	0.20255	26.144	26.001	26.203	0	0.10768	-0.0043667	NaN	53.089	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36804			14328	3287	10095	10113							-0.06663616786477178
ESRNAGSNTAY	11	Unmodified	_ESRNAGSNTAY_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.262716	1168.51088	-1.0142	-0.00059356	0.56772	0.00033226	-0.44646	-0.0002613	585.2629974186452	26.122	1.3191	25.954	25.737	27.057	-0.16816	-0.08237	-0.00030142	NaN	53.089	92	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2143000			14329	3287	10095	10113							-0.06663616786477178
ESRNAGSNTAY	11	Unmodified	_ESRNAGSNTAY_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.262716	1168.51088	-1.5509	-0.00090767	1.1215	0.00065639	-0.42935	-0.00025128	585.2633266124383	26.157	1.3381	25.993	25.716	27.054	-0.16331	-0.043261	0.00034684	NaN	53.089	95	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2223400			14330	3287	10095	10113							-0.06663616786477178
ESRPKKLIL	9	Unmodified	_ESRPKKLIL_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2805786132812	2	542.347866	1082.68118	-1.0953	-0.00059403	0.59382	0.00032206	-0.50146	-0.00027197	542.3480658480349	62.325	0.30279	62.147	61.963	62.265	-0.17782					11	7	2	0	0	0	0.024381	1	6997	6997		37.159	5.2042	1	120130	+		14331	21745	10096	10114	15652	15652					0.14314570673764138
ESRQKCPPWW	10	Unmodified	_ESRQKCPPWW_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.2109680175781	3	439.545002	1315.61318	-0.080048	-3.5185E-05	-3.5118	-0.0015436	-3.5919	-0.0015788	439.5434256946574	26.95	0.55777	26.794	26.503	27.061	-0.15664					21	12	2	0	0	0	0.03519	1	1390	1390		11.097	0	1	105050			14332	7940	10097	10115	15653	15653					-0.032006222485733815
ESRSVNDWVP	10	Unmodified	_ESRSVNDWVP_					0	0	0		ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.2599487304688	2	594.785827	1187.5571	-0.6766	-0.00040243	3.4801	0.0020699	2.8035	0.0016675	594.7876020689978	76.403	0.36618	76.151	75.905	76.271	-0.25162					13	8	2	0	0	0	0.03519	1	9066	9066		54.722	21.91	1	150880			14333	4398	10098	10116	15654	15654					-0.029175518843885584
ESRVKRFN	8	Unmodified	_ESRVKRFN_					0	0	0			REV__ENSG00000178718|ENST00000322177|RPP25	REV__ENSG00000178718|ENST00000322177|RPP25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2926025390625	2	518.28834	1034.56213	0.59107	0.00030635	-4.4659	-0.0023146	-3.8748	-0.0020083	518.286075548234	54.983	0.36604	54.776	54.575	54.941	-0.20613					22	9	3	0	0	0	0.027866	1	5839	5839		34.173	11.13	1	753580	+		14334	27200	10099	10117	15655	15655					0.04622796768899207
ESRWTELL	8	Unmodified	_ESRWTELL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2915649414062	2	517.269281	1032.52401	0.93266	0.00048244	3.7497	0.0019396	4.6823	0.002422	517.2697269515728	54.814	0.1455	54.608	54.502	54.648	-0.20613					5	3	2	0	0	0	0.027866	1	5821	5821		29.15	0	1	45933			14335	4256;18250;18249	10100	10118	15656	15656					0.00904866063569898
ESSAPSPRQP	10	Unmodified	_ESSAPSPRQP_					0	0	0			REV__nc|ENSG00000256463|Q9BXA9-2|SALL3	REV__nc|ENSG00000256463|Q9BXA9-2|SALL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2415161132812	2	528.259445	1054.50434	-1.5954	-0.00084278	-4.2381	-0.0022388	-5.8335	-0.0030816	528.2564747395155	43.735	0.28807	43.735	43.548	43.836	0					10	7	2	0	0	0	0.03519	1	4132	4132		45.972	14.017	1	68209	+		14336	29080	10101	10119	15657	15657					-0.02073509947194907
ESSHNHSYY	9	Unmodified	_ESSHNHSYY_					0	0	0			REV__nc|ENSG00000239998|Q8N149-3|LILRA2	REV__nc|ENSG00000239998|Q8N149-3|LILRA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2257690429688	2	562.225602	1122.43665	-0.22449	-0.00012621	0.22755	0.00012793	0.0030583	1.7194E-06	562.2255189776262	56.606	0.76739	56.439	56.165	56.932	-0.1672					53	19	4	0	0	0	0.50848	1	6137	6137		58.782	3.2778	1	2466600	+		14337	28958	10102	10120	15658	15658					-0.11966959877986483
ESSHNHSYY	9	Unmodified	_ESSHNHSYY_					0	0	0			REV__nc|ENSG00000239998|Q8N149-3|LILRA2	REV__nc|ENSG00000239998|Q8N149-3|LILRA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2256469726562	2	562.225602	1122.43665	0.27073	0.00015221	-0.30392	-0.00017087	-0.033197	-1.8664E-05	562.2252685581124	56.737	0.75101	56.535	56.211	56.962	-0.20208					46	19	3	0	0	0	0.59099	1	6156	6156		53.351	5.4358	1	2853100	+		14338	28958	10102	10120	15659	15659					-0.11966959877986483
ESSIKKPL	8	Unmodified	_ESSIKKPL_					0	0	0			REV__ENSG00000180353|ENST00000314583|HCLS1	REV__ENSG00000180353|ENST00000314583|HCLS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2701721191406	2	451.271293	900.528032	0.31706	0.00014308	-0.31553	-0.00014239	0.0015265	6.8885E-07	451.27109752857245	46.975	0.62913	46.975	46.659	47.289	0					44	16	4	0	0	0	0.81662	1	4673	4673		57.811	0	1	1831100	+		14339	27335	10103	10121	15660	15660					0.07378955557271638
ESSLDYVYQI	10	Unmodified	_ESSLDYVYQI_					0	0	0		ENSG00000079482|ENST00000355520|OPHN1;nc|ENSG00000079482|O60890-2|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	608.8168334960938	2	608.790244	1215.56593	-0.20505	-0.00012484	1.8015	0.0010967	1.5964	0.00097188	609.2916836584907	99.656	0.21026	99.666	99.533	99.743	0.010239					7	4	2	0	0	0	0.03519	1	12707	12707		113.41	51.304	1	52352			14340	1668	10104	10122	15661	15661					-0.03322623038570782
ESSNKKTK	8	Unmodified	_ESSNKKTK_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2715759277344	2	461.253631	920.49271	-0.92151	-0.00042505	1.8757	0.00086518	0.95422	0.00044014	461.25421501159786	61.292	0.37441	61.116	60.914	61.289	-0.1761					13	8	2	0	0	0	0.027866	1	6829	6829		40.778	8.8233	1	110910	+		14341	26857	10105	10123	15662	15662					0.029282930294812104
ESSNKKTK	8	Unmodified	_ESSNKKTK_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	461.253631	920.49271	0.0073238	3.3781E-06	1.4956	0.00068983	1.5029	0.00069321	461.25421385659945	61.013	0.56609	61.013	60.768	61.334	0	-0.080565	0.0001488	NaN	40.778	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338460	+		14342	26857	10105	10123							0.029282930294812104
ESSNKKTK	8	Unmodified	_ESSNKKTK_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	461.253631	920.49271	-0.0078355	-3.6142E-06	0.81008	0.00037365	0.80224	0.00037004	461.2544759868756	61.346	1.2409	61.12	60.371	61.611	-0.22663	0.025967	-0.00048356	NaN	40.778	54	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238490	+		14343	26857	10105	10123							0.029282930294812104
ESSNKKTK	8	Unmodified	_ESSNKKTK_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	461.253631	920.49271	0.15832	7.3024E-05	0.89488	0.00041277	1.0532	0.00048579	461.2542494771414	61.019	0.56384	61.09	60.751	61.315	0.071129	-0.003902	-0.00040533	NaN	40.778	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208980	+		14344	26857	10105	10123							0.029282930294812104
ESSSGENEAY	10	Unmodified	_ESSSGENEAY_					0	0	0			REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF	REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7077026367188	2	536.706908	1071.39926	-0.54441	-0.00029219	1.054	0.0005657	0.5096	0.00027351	536.7073116351955	56.862	1.2038	56.695	56.402	57.606	-0.1672					66	31	3	0	0	0	0.74632	1	6164	6164		64.207	9.431	1	6407500	+		14345	21164	10106	10124	15663	15663					-0.13358095934268022
ESSSKPPL	8	Unmodified	_ESSSKPPL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2583312988281	2	422.724175	843.433798	-0.23048	-9.7431E-05	2.7685	0.0011703	2.538	0.0010729	422.72523571896437	42.24	0.46185	42.108	41.857	42.319	-0.13219					19	13	2	0	0	0	0.027866	1	3811	3811		7.6903	0	1	134570	+		14346	36722	10107	10125	15664	15664					0.005818167351435477
ESSSRKQRR	9	Unmodified	_ESSSRKQRR_					0	0	0			REV__ENSG00000133937|ENST00000238558|GSC	REV__ENSG00000133937|ENST00000238558|GSC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.310335	1132.60612	-0.25961	-0.00014728	-1.4072	-0.00079831	-1.6668	-0.00094558	567.3092108613972	91.731	0.21714	91.607	91.542	91.759	-0.12341					6	4	2	0	0	0	0.024539	1	11271	11271		20.947	5.3051	1	63145	+		14347	23403	10108	10126	15665	15665					0.045117811952422926
ESSTKQPW	8	Unmodified	_ESSTKQPW_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.7693786621094	2	481.732532	961.45051	0.033912	1.6337E-05	0.15556	7.4936E-05	0.18947	9.1273E-05	481.732468670435	57.519	0.85101	57.322	56.931	57.782	-0.19699					60	22	4	0	0	0	0.027866	1	6276	6276		28.254	5.2118	1	1327700	+		14348	29205	10109	10127	15666	15666					-0.031756823789010014
ESSVKKTR	8	Unmodified	_ESSVKKTR_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.724853515625	2	467.769448	933.524344	0.1503	7.0304E-05	4.3251	0.0020232	4.4754	0.0020935	467.77126543095466	46.881	0.64586	46.728	46.55	47.196	-0.15301					24	16	2	0	0	0	0.027866	1	4679	4679		45.952	0	1	396180	+		14349	37192	10110	10128	15667	15667					0.05492285783441275
ESSWTFLIP	9	Unmodified	_ESSWTFLIP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.8168334960938	2	540.274032	1078.53351	-0.35985	-0.00019442	-2.7952	-0.0015102	-3.155	-0.0017046	540.2720411759474	40.768	0.28494	40.768	40.623	40.908	0					12	7	2	0	0	0	0.024381	1	3627	3627		45.952	20.502	1	234510			14350	6595	10111	10129	15668	15668					-0.0026136565090837394
ESSWTFLIP	9	Unmodified	_ESSWTFLIP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.8162231445312	2	540.274032	1078.53351	0.11752	6.3495E-05	-4.3448	-0.0023474	-4.2273	-0.0022839	540.2715608103772	40.914	0.35883	40.791	40.547	40.906	-0.12318					13	9	2	0	0	0	0.024294	1	3621	3621		45.952	20.502	1	163590			14351	6595	10111	10129	15669	15669					-0.0026136565090837394
ESSWTFLIP	9	Unmodified	_ESSWTFLIP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.816162109375	2	540.274032	1078.53351	-0.94598	-0.00051109	-2.6762	-0.0014459	-3.6222	-0.001957	540.2719542882705	40.931	0.31185	40.954	40.764	41.076	0.023006					14	8	2	0	0	0	0.024523	1	3588	3588		21.96	4.5949	1	112880			14352	6595	10111	10129	15670	15670					-0.0026136565090837394
ESTCGCEECVY	11	Carbamidomethyl (C)	_ESTCGC(Carbamidomethyl (C))EECVY_	ESTC(0.032)GC(0.968)EECVY		ESTC(-15)GC(15)EEC(-44)VY		0	1	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.2174072265625	2	640.217414	1278.42027	-1.4386	-0.00092099	1.0392	0.00066532	-0.39936	-0.00025568	640.2184200072795	72.112	2.1334	71.837	71.473	73.606	-0.27509					150	51	6	0	0	0	0.6032	4	8444	8410;8420;8444;8456		69.628	21.037	3	22427000	+		14353	26713	10112	10130	15671;15672;15673;15674	15673	354				-0.20779913212936663
ESTCGCEECVY	11	Carbamidomethyl (C)	_ESTCGC(Carbamidomethyl (C))EECVY_	ESTC(0.037)GC(0.963)EECVY		ESTC(-14)GC(14)EEC(-35)VY		0	1	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.2179565429688	2	640.217414	1278.42027	0.26599	0.00017029	-0.65785	-0.00042117	-0.39186	-0.00025088	640.2173863151467	72.123	2.1296	71.861	71.48	73.61	-0.26199					157	51	6	0	0	0	0.75995	2	8472	8472;8484		60.118	17.722	3	22521000	+		14354	26713	10112	10130	15675;15676	15675	354				-0.20779913212936663
ESTCGCEECVY	11	Carbamidomethyl (C)	_ESTCGC(Carbamidomethyl (C))EECVY_	ESTC(0.005)GC(0.995)EECVY		ESTC(-23)GC(23)EEC(-35)VY		0	1	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.2183837890625	2	640.217414	1278.42027	-0.46921	-0.0003004	0.077203	4.9427E-05	-0.39201	-0.00025097	640.2178495095105	71.965	2.163	71.759	71.382	73.545	-0.20614					164	52	6	0	0	0	0.72712	6	8397	8388;8397;8409;8421;8434;8459		62.107	12.258	3	24591000	+		14355	26713	10112	10130	15677;15678;15679;15680;15681;15682	15678	354				-0.20779913212936663
ESTCGCEECVY	11	Carbamidomethyl (C)	_ESTCGC(Carbamidomethyl (C))EECVY_					0	1	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	640.217414	1278.42027	0.26599	0.00017029	-0.65785	-0.00042117	-0.39186	-0.00025088	640.2173863151467	72.123	2.1296	71.861	71.48	73.61	-0.26199	0.042078	-0.00099376	NaN	69.628	157	51	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22521000	+		14356	26713	10112	10130			354				-0.20779913212936663
ESTFAVLDI	9	Unmodified	_ESTFAVLDI_					0	0	0			REV__ENSG00000163689|ENST00000482387|CFAP20DC	REV__ENSG00000163689|ENST00000482387|CFAP20DC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2595520019531	2	497.758215	993.501877	0.3821	0.00019019	-2.0048	-0.00099789	-1.6227	-0.0008077	497.7593775839292	75.491	1.2323	75.502	75.051	76.284	0.010376					98	32	5	0	0	0	0.33245	1	9194	9194		71.296	0	1	2444000	+		14357	25618	10113	10131	15683	15683					0.004866415951369163
ESTFLFLEI	9	Unmodified	_ESTFLFLEI_					0	0	0		SLC9C2|p.F199Lfs*19|1|0.1|ENSG00000162753|chr1:173583549-173583549|A/-|frameshift_variant	SLC9C2|p.F199Lfs*19|1|0.1|ENSG00000162753|chr1:173583549-173583549|A/-|frameshift_variant	SLC9C2|p.F199Lfs*19|1|0.1|ENSG00000162753|chr1:173583549-173583549|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7907104492188	2	549.789515	1097.56448	-0.47478	-0.00026103	2.095	0.0011518	1.6202	0.00089078	549.7895685366638	103.98	0.73563	103.98	103.7	104.44	0.0031433					46	18	4	0	0	0	0.29104	1	13291	13291		76.847	13.54	1	128850			14358	37896	10114	10132	15684	15684					0.019597876633042688
ESTGGETHKI	10	Unmodified	_ESTGGETHKI_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.27783203125	2	529.759278	1057.504	-0.70578	-0.00037389	-2.7742	-0.0014697	-3.48	-0.0018436	529.7576205621657	80.209	0.58934	80.23	79.938	80.528	0.021446					20	13	2	0	0	0	0.03519	1	9917	9917		44.377	0	1	112110	+		14359	23311	10115	10133	15685	15685					-0.022449296670629337
ESTGIPLVVI	10	Unmodified	_ESTGIPLVVI_					0	0	0		nc|ENSG00000112855|P49590-2|HARS2;ENSG00000112855|ENST00000230771|HARS2	nc|ENSG00000112855|P49590-2|HARS2	nc|ENSG00000112855|P49590-2|HARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3287353515625	2	514.305332	1026.59611	-0.039289	-2.0206E-05	2.421	0.0012451	2.3817	0.0012249	514.3058957890382	69.867	0.20535	69.867	69.71	69.915	0					6	4	2	0	0	0	0.03519	1	8432	8432		44.117	0	1	69805			14360	3246	10116	10134	15686	15686					0.08387780417297108
ESTGTNIGEAL	11	Unmodified	_ESTGTNIGEAL_					0	0	0		nc|ENSG00000161249|Q6E0U4-7|DMKN;nc|ENSG00000161249|Q6E0U4-3|DMKN;nc|ENSG00000161249|Q6E0U4-5|DMKN;nc|ENSG00000161249|Q6E0U4-6|DMKN;nc|ENSG00000161249|Q6E0U4-4|DMKN;CON__A3EZ79;nc|ENSG00000161249|Q6E0U4-16|DMKN;nc|ENSG00000161249|Q6E0U4-2|DMKN;ENSG00000161249|ENST00000339686|DMKN;CON__A3EZ82	nc|ENSG00000161249|Q6E0U4-7|DMKN	nc|ENSG00000161249|Q6E0U4-7|DMKN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3009643554688	2	546.264393	1090.51423	-1.0664	-0.00058255	4.2525	0.002323	3.1861	0.0017404	546.2665470728449	69.124	0.37483	68.862	68.626	69.001	-0.26165					12	8	2	0	0	0	0.02475	1	7988	7988		28.081	10.613	1	88784		+	14361	481	10117	10135	15687	15687					-0.02740366732473376
ESTIGRKLS	9	Unmodified	_ESTIGRKLS_					0	0	0		nc|ENSG00000196950|Q9ULF5-2|SLC39A10;ENST00000430412.5_1_2:196521853-196599762:+|nuORF;ENSG00000196950|ENST00000359634|SLC39A10;ENST00000465851.1_1_2:196545249-196581758:+|nuORF	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7178955078125	2	495.782556	989.550559	-0.36263	-0.00017979	-2.7446	-0.0013607	-3.1072	-0.0015405	495.7811327557606	27.977	1.774	28.058	27.208	28.982	0.081293					74	44	2	0	0	0	0.024457	1	1488	1488		29.15	0	1	1781800			14362	9938	10118	10136	15688	15688					0.055365549549037496
ESTQIKPAL	9	Unmodified	_ESTQIKPAL_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.30810546875	2	493.779482	985.544411	0.018694	9.2309E-06	0.14481	7.1503E-05	0.1635	8.0734E-05	493.77931690074433	68.759	0.59467	68.774	68.459	69.053	0.015121					27	15	3	0	0	0	0.024405	1	8161	8161		35.618	8.9254	1	295430	+		14363	28131	10119	10137	15689	15689					0.05106036723384477
ESTRRQDTR	9	Unmodified	_ESTRRQDTR_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.784912109375	2	574.791975	1147.5694	-0.92158	-0.00052972	-0.030158	-1.7334E-05	-0.95174	-0.00054705	574.7923695547347	60.436	0.89304	60.26	59.704	60.597	-0.1761					30	22	2	0	0	0	0.024495	1	6761	6761		19.997	0	1	624440			14364	3086	10120	10138	15690	15690					0.001514845786459773
ESTSLLARPK	10	Unmodified	_ESTSLLARPK_					0	0	0		ENST00000373382.5_1_10:70883468-70883666:+|nuORF	ENST00000373382.5_1_10:70883468-70883666:+|nuORF	ENST00000373382.5_1_10:70883468-70883666:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.3345947265625	2	551.316763	1100.61897	0.056991	3.142E-05	3.7781	0.0020829	3.835	0.0021143	551.318712037965	74.765	0.62743	74.502	74.231	74.858	-0.26326					28	14	3	0	0	0	0.03519	1	8815	8815		19.997	0	1	489530			14365	13076	10121	10139	15691	15691					0.07268799534745085
ESTVQKIL	8	Unmodified	_ESTVQKIL_					0	0	0		ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2486572265625	2	459.26875	916.522947	0.82385	0.00037837	-0.30145	-0.00013845	0.5224	0.00023992	459.2685237251908	71.207	1.5452	71.207	70.868	72.414	0					67	39	3	0	0	0	0.027866	1	8622	8622		53.351	0	1	1343500			14366	10538	10122	10140	15692	15692					0.06134651694674176
ESTVTVFQQT	10	Unmodified	_ESTVTVFQQT_					0	0	0		HIF1A|p.Q596E|1|0.34|ENSG00000100644|chr14:61740881-61740881|C/G|missense_variant	HIF1A|p.Q596E|1|0.34|ENSG00000100644|chr14:61740881-61740881|C/G|missense_variant	HIF1A|p.Q596E|1|0.34|ENSG00000100644|chr14:61740881-61740881|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.2838745117188	2	570.282586	1138.55062	-0.97638	-0.00055681	-4.1555	-0.0023698	-5.1319	-0.0029266	570.279862382485	80.776	1.5547	80.624	80.049	81.604	-0.15168					50	37	2	0	0	0	0.03519	1	9943	9943		45.022	14.704	1	210460			14367	17736	10123	10141	15693	15693					-0.013114898357571292
ESVAATVSSSA	11	Unmodified	_ESVAATVSSSA_					0	0	0		nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF;ENSG00000136826|ENST00000374672|KLF4	nc|ENSG00000136826|O43474|KLF4	nc|ENSG00000136826|O43474|KLF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.76458740234375	2	504.745836	1007.47712	-0.54291	-0.00027403	1.6614	0.00083861	1.1185	0.00056458	504.74676751535077	21.075	0.53993	20.985	20.814	21.354	-0.090092					22	10	3	0	0	0	0.024747	1	592	592		18.262	0	1	29287			14368	18308	10124	10142	15694	15694					-0.026320382782273555
ESVKEKVTR	9	Unmodified	_ESVKEKVTR_					0	0	0		ENST00000523343.1_1_8:54628482-54708311:-|nuORF;ENST00000523426.1_1_8:54669186-54714423:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H	ENST00000523343.1_1_8:54628482-54708311:-|nuORF	ENST00000523343.1_1_8:54628482-54708311:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3096923828125	2	538.308938	1074.60332	0.044493	2.3951E-05	0.66995	0.00036064	0.71444	0.00038459	538.3093653440621	18.788	0.74131	18.584	18.312	19.053	-0.20371					39	14	4	0	0	0	0.86013	1	351	351		35.152	8.1047	1	1610700			14369	1099	10125	10143	15695	15695					0.06900513017717458
ESVKFEGW	8	Unmodified	_ESVKFEGW_					0	0	0			REV__nc|ENSG00000060982|P54687-2|BCAT1	REV__nc|ENSG00000060982|P54687-2|BCAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.29010009765625	2	491.23745	980.460347	-1.0581	-0.0005198	-3.4415	-0.0016906	-4.4996	-0.0022104	491.23578086896015	34.324	0.26844	34.374	34.173	34.441	0.050255					8	6	2	0	0	0	0.027866	1	2472	2472		19.36	0	1	55344	+		14370	20255	10126	10144	15696	15696					-0.03066494373513251
ESVKKLLCV	9	Unmodified	_ESVKKLLCV_					0	0	0			REV__ENST00000531016.1_1_11:47836976-47837554:-|nuORF	REV__ENST00000531016.1_1_11:47836976-47837554:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.8035888671875	2	509.801903	1017.58925	0.28849	0.00014708	3.1095	0.0015852	3.398	0.0017323	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.62163	1	10570	10570		51.335	2.1247	1	3441300	+		14371	34551	10127	10145	15697	15697					0.08116144265068215
ESVLRETDL	9	Unmodified	_ESVLRETDL_					0	0	0		ENST00000575662.1_1_17:4444862-4445225:-|nuORF	ENST00000575662.1_1_17:4444862-4445225:-|nuORF	ENST00000575662.1_1_17:4444862-4445225:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2901000976562	2	531.277303	1060.54005	-0.98693	-0.00052433	-1.7565	-0.00093316	-2.7434	-0.0014575	531.2762291604736	54.142	0.09338	54.006	53.928	54.021	-0.13617					4	2	2	0	0	0	0.024477	1	5735	5735		27.882	0	1	159990			14372	17102	10128	10146	15698	15698					0.012205275098040147
ESVMMFGR	8	Unmodified	_ESVMMFGR_					0	0	0		nc|ENSG00000068784|Q8N5C6-2|SRBD1;ENSG00000068784|ENST00000263736|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28466796875	2	478.720055	955.425558	0.33815	0.00016188	3.8135	0.0018256	4.1517	0.0019875	478.72166591391647	76.221	0.42879	76.233	75.976	76.405	0.011635					17	10	3	0	0	0	0.027866	1	9318	9318		23.042	0	1	105160			14373	1391	10129	10147	15699	15699					-0.05393776777464154
ESVNGLILL	9	Unmodified	_ESVNGLILL_					0	0	0			REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2843933105469	2	479.2844	956.554247	0.2172	0.0001041	0.12711	6.0921E-05	0.34431	0.00016502	479.2843057015421	90.127	1.8221	90.14	89.089	90.911	0.013443					83	43	4	0	0	0	0.17455	1	11321	11321		94.006	3.6366	1	1880000	+		14374	36493	10130	10148	15700	15700					0.07423224728779587
ESVPFFVKL	9	Unmodified	_ESVPFFVKL_					0	0	0			REV__ENSG00000055211|ENST00000367419|GINM1	REV__ENSG00000055211|ENST00000367419|GINM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2703247070312	2	533.302593	1064.59063	-0.85709	-0.00045709	-3.4185	-0.0018231	-4.2756	-0.0022802	533.3005916861858	61.349	0.858	61.092	60.848	61.706	-0.25725					56	20	5	0	0	0	0.024457	1	6933	6933		45.952	24.266	1	1521700	+		14375	20203	10131	10149	15701	15701					0.060921016254724236
ESVPPPPQL	9	Unmodified	_ESVPPPPQL_					0	0	0			REV__nc|ENSG00000166484|Q13164-2|MAPK7	REV__nc|ENSG00000166484|Q13164-2|MAPK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2604675292969	2	482.260925	962.507297	-0.28429	-0.0001371	0.8068	0.00038909	0.52251	0.00025198	482.2611531047443	66.74	1.278	66.459	66.281	67.559	-0.28149					96	36	3	0	0	0	0.62163	1	7909	7909		51.335	0	1	3600200	+		14376	26026	10132	10150	15702	15702					0.02454365177618456
ESVQKALEW	9	Unmodified	_ESVQKALEW_					0	0	0			REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2825927734375	2	545.282389	1088.55022	-0.015385	-8.3893E-06	-0.67208	-0.00036647	-0.68747	-0.00037486	545.2820216882391	59.969	1.7961	59.793	59.078	60.874	-0.1761					78	45	3	0	0	0	0.028071	1	6666	6666		143.11	1.5865	1	7184100	+		14377	23881	10133	10151	15703	15703					0.009491352350551097
ESVRHLDLL	9	Unmodified	_ESVRHLDLL_					0	0	0			REV__ENSG00000117226|ENST00000370481|GBP3	REV__ENSG00000117226|ENST00000370481|GBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3034057617188	2	541.303655	1080.59276	-0.14343	-7.764E-05	-0.79556	-0.00043064	-0.93899	-0.00050828	541.3031407680302	47.263	1.1151	47.11	46.776	47.891	-0.15301					98	31	5	0	0	0	0.67687	1	4724	4724		47.657	4.7931	1	10586000	+		14378	22334	10134	10152	15704	15704					0.055685303633026706
ESVRLEYRA	9	Unmodified	_ESVRLEYRA_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.270263671875	2	561.798737	1121.58292	-0.63173	-0.00035491	0.14243	8.0017E-05	-0.4893	-0.00027489	561.7986828677564	27.07	0.55621	26.914	26.629	27.185	-0.15664					38	12	4	0	0	0	0.024323	1	1407	1407		35.618	0	1	552600			14379	2288	10135	10153	15705	15705					0.026993423579142473
ESVSAAPSAAR	11	Unmodified	_ESVSAAPSAAR_					0	0	0		ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2899780273438	2	523.26727	1044.51999	2.8908	0.0015127	2.9185	0.0015272	5.8093	0.0030398	523.2686526743701	19.2	0.54311	19.266	18.995	19.538	0.066195					15	10	2	0	0	0	0.024736	1	342	342		29.17	3.596	1	65424			14380	2871	10136	10154	15706	15706					-0.0004922343014186481
ESVSFQQSQGE	11	Unmodified	_ESVSFQQSQGE_					0	0	0			REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.1830139160156	3	409.182563	1224.52586	-0.24849	-0.00010168	0.25078	0.00010261	0.0022897	9.369E-07	409.18305072452813	25.15	1.5357	24.923	24.451	25.987	-0.22683					130	36	7	0	0	0	0.86757	1	1156	1156		53.597	2.8056	1	7181700	+		14381	20104	10137	10155	15707	15707					-0.07742169709126756
ESVTGPWKGD	10	Unmodified	_ESVTGPWKGD_					0	0	0		nc|ENSG00000155659|Q9Y279-3|VSIG4;nc|ENSG00000155659|Q9Y279-2|VSIG4;ENSG00000155659|ENST00000374737|VSIG4	nc|ENSG00000155659|Q9Y279-3|VSIG4	nc|ENSG00000155659|Q9Y279-3|VSIG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7933349609375	2	538.256371	1074.49819	-1.1099	-0.00059739	-0.10014	-5.3898E-05	-1.21	-0.00065129	538.2557162050666	24.941	0.38771	24.941	24.786	25.173	0					9	8	2	0	0	0	0.03519	1	1137	1137		26.693	5.0072	1	22089			14382	6480	10138	10156	15708	15708					-0.03608028178700806
ESVTLLAALY	10	Unmodified	_ESVTLLAALY_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2904663085938	2	540.30279	1078.59103	-0.88155	-0.0004763	1.0239	0.0005532	0.14233	7.6901E-05	540.3033418137027	66.407	0.26906	66.183	66.026	66.295	-0.22374					9	6	3	0	0	0	0.03519	1	7636	7636		44.117	0	1	219680	+		14383	28219	10139	10157	15709	15709					0.05487476554662862
ESVTNFRND	9	Unmodified	_ESVTNFRND_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.290283203125	2	541.249077	1080.4836	-0.57463	-0.00031102	-3.9021	-0.002112	-4.4768	-0.0024231	541.7468564605002	53.398	0.35386	53.398	53.337	53.691	0					10	9	2	0	0	0	0.024307	1	5797	5797		63.534	33.03	1	180050	+		14384	28008	10140	10158	15710	15710					-0.0534210032685678
ESVVEFLMN	9	Unmodified	_ESVVEFLMN_					0	0	0		nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2583618164062	2	534.257525	1066.5005	-0.02335	-1.2475E-05	2.8792	0.0015383	2.8559	0.0015258	534.2589048471251	66.046	0.60902	66.046	65.721	66.33	0					44	16	4	0	0	0	0.29158	1	7873	7873		76.774	0	1	8760200			14385	8688	10141	10159	15711	15711					-0.0300931576525727
ESVVLFRVAD	10	Unmodified	_ESVVLFRVAD_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3297729492188	2	567.811313	1133.60807	-1.4623	-0.00083029	0.049529	2.8123E-05	-1.4127	-0.00080217	567.8128850495253	91.98	0.39162	91.831	91.525	91.917	-0.1487					11	8	2	0	0	0	0.03519	1	11281	11281		35.152	3.6222	1	29671	+		14386	32494	10142	10160	15712	15712					0.04661397160475644
ESWAPPTPD	9	Unmodified	_ESWAPPTPD_					0	0	0		ENST00000469087.1_1_21:36206419-36206857:-|nuORF	ENST00000469087.1_1_21:36206419-36206857:-|nuORF	ENST00000469087.1_1_21:36206419-36206857:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7402648925781	2	500.224539	998.434526	-1.3422	-0.0006714	-2.0101	-0.0010055	-3.3523	-0.0016769	500.72442104934174	41.071	0.15286	40.841	40.733	40.886	-0.2303					6	3	2	0	0	0	0.024506	1	3586	3586		30.504	1.3541	1	47023			14387	14893	10143	10161	15713	15713					-0.06475388615808697
ESWAPPTPD	9	Unmodified	_ESWAPPTPD_					0	0	0		ENST00000469087.1_1_21:36206419-36206857:-|nuORF	ENST00000469087.1_1_21:36206419-36206857:-|nuORF	ENST00000469087.1_1_21:36206419-36206857:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.224539	998.434526	-0.3209	-0.00016052	-1.0717	-0.00053611	-1.3926	-0.00069663	500.22541103152673	41.139	0.2306	41.004	40.83	41.06	-0.13553	0.056204	0.0011944	NaN	16.473	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60839			14388	14893	10143	10161							-0.06475388615808697
ESWIRAKYE	9	Unmodified	_ESWIRAKYE_					0	0	0		ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;nc|ENSG00000135439|Q99490-2|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	591.2990112304688	2	591.301113	1180.58767	-1.3667	-0.00080811	-2.2178	-0.0013114	-3.5844	-0.0021195	591.2997449196737	27.371	0.75773	27.202	26.892	27.649	-0.16816					49	17	5	0	0	0	0.75397	1	1492	1492		42.396	0	1	1921000			14389	4894	10144	10162	15714	15714					0.004602265006496964
ESWRETLL	8	Unmodified	_ESWRETLL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant;XPO4|p.E325Lfs*5|1|0.12|ENSG00000132953|chr13:20822157-20822158|-/AA|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7686767578125	2	517.269281	1032.52401	-0.68384	-0.00035373	0.57501	0.00029743	-0.10883	-5.6297E-05	517.2690412024243	52.918	1.0362	52.918	52.16	53.196	0					27	17	3	0	0	0	0.027866	1	5595	5595		66.429	5.4573	1	306460			14390	4666	10145	10163	15715	15715					0.00904866063569898
ESWRITKI	8	Unmodified	_ESWRITKI_					0	0	0		ENSG00000087053|ENST00000346299|MTMR2;nc|ENSG00000087053|Q13614-2|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7677612304688	2	516.795466	1031.57638	-0.88831	-0.00045908	-2.6263	-0.0013573	-3.5146	-0.0018164	517.2931773500596	52.155	0.78519	52.247	52.003	52.788	0.091938					30	19	2	0	0	0	0.027866	1	5503	5503		37.159	0	1	670540			14391	1830	10146	10164	15716	15716					0.061854491971644165
ESYIGEPV	8	Unmodified	_ESYIGEPV_					0	0	0			REV__ENSG00000163491|ENST00000691995|NEK10	REV__ENSG00000163491|ENST00000691995|NEK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.23223876953125	2	447.216183	892.417813	-0.96956	-0.0004336	-2.4532	-0.0010971	-3.4228	-0.0015307	447.21518027350083	37.866	0.4134	37.784	37.57	37.984	-0.082516					15	11	2	0	0	0	0.027866	1	3097	3097		28.254	0	1	139200	+		14392	25574	10147	10165	15717	15717					-0.032698895017574614
ESYMDILSK	9	Unmodified	_ESYMDILSK_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.8212890625	2	543.262807	1084.51106	-0.35971	-0.00019542	-0.81868	-0.00044476	-1.1784	-0.00064017	543.7624082620446	68.43	0.18241	68.449	68.353	68.536	0.018913					5	3	2	0	0	0	0.024539	1	8133	8133		20.947	3.582	1	69937	+		14393	28493	10148	10166	15718	15718					-0.027813331108291095
ESYMDILSK	9	Unmodified	_ESYMDILSK_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.262807	1084.51106	-0.64494	-0.00035037	-0.86961	-0.00047243	-1.5146	-0.0008228	543.2622182093803	68.425	0.30334	68.425	68.217	68.52	0	-0.011898	-2.5236E-05	NaN	20.947	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94312	+		14394	28493	10148	10166							-0.027813331108291095
ESYSHCRGVC	10	Unmodified	_ESYSHCRGVC_					0	0	0			REV__ENSG00000173626|ENST00000368602|TRAPPC3L	REV__ENSG00000173626|ENST00000368602|TRAPPC3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2716064453125	2	570.731683	1139.44881	0.35751	0.00020404	3.626	0.0020695	3.9835	0.0022735	570.73357430213	49.658	0.41045	49.478	49.307	49.717	-0.18071					15	10	2	0	0	0	0.03519	1	4978	4978		34.173	0	1	238440	+		14395	26792	10149	10167	15719	15719					-0.1153338273081772
ETAARHVM	8	Unmodified	_ETAARHVM_					0	0	0			REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2824401855469	2	457.729269	913.443985	-0.55178	-0.00025257	-2.5842	-0.0011829	-3.136	-0.0014354	457.72804516556096	34.83	0.61351	34.808	34.435	35.049	-0.021763					20	15	2	0	0	0	0.027866	1	2565	2565		29.15	6.1071	1	137740	+		14396	24392	10150	10168	15720	15720					-0.016198988112705592
ETAFREIEI	9	Unmodified	_ETAFREIEI_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.2168579101562	2	554.287671	1106.56079	-0.51389	-0.00028484	0.57672	0.00031967	0.06283	3.4826E-05	554.2887245996254	69.912	0.66882	69.645	69.247	69.916	-0.26725					30	15	3	0	0	0	0.024389	1	8154	8154		35.152	0	1	149680			14397	9837	10151	10169	15721	15721					0.011771178894605328
ETAFVVDEV	9	Unmodified	_ETAFVVDEV_					0	0	0		ENSG00000146425|ENST00000367089|DYNLT1	ENSG00000146425|ENST00000367089|DYNLT1	ENSG00000146425|ENST00000367089|DYNLT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2960205078125	2	504.747847	1007.48114	-0.71544	-0.00036112	2.5717	0.0012981	1.8563	0.00093697	504.74873881755906	61.814	0.63012	61.814	61.414	62.044	0					37	16	3	0	0	0	0.023596	1	7124	7124		53.351	0	1	421420			14398	5883	10152	10170	15722	15722					-0.02229948784508906
ETAGLFKMKV	10	Unmodified	_ETAGLFKMKV_					0	0	0			REV__SLC2A2|p.E514K|1|0.17|ENSG00000163581|chr3:170997938-170997938|C/T|missense_variant	REV__SLC2A2|p.E514K|1|0.17|ENSG00000163581|chr3:170997938-170997938|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3115844726562	2	562.312635	1122.61072	-0.17122	-9.6276E-05	-2.903	-0.0016324	-3.0742	-0.0017287	562.3109584507064	95.007	0.90732	95.011	94.651	95.558	0.0033798					28	20	2	0	0	0	0.55353	1	12073	12073		82.241	5.4664	1	420200	+		14399	37502	10153	10171	15723	15723					0.0543152929376447
ETAIKTKGVDE	11	Unmodified	_ETAIKTKGVDE_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	594.8280639648438	2	595.816793	1189.61903	-1.4059	-0.00083768	0.081999	4.8856E-05	-1.3239	-0.00078883	595.8168862901761	47.088	0.93166	47.088	46.659	47.591	0					36	25	2	0	0	0	0.02478	1	4649	4649		65.465	24.687	1	133080			14400	9156	10154	10172	15724	15724					0.03180754744107617
ETAKKGLLE	9	Unmodified	_ETAKKGLLE_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7857666015625	2	494.787307	987.560061	-1.0681	-0.00052847	-4.2088	-0.0020825	-5.2769	-0.0026109	494.7843170801859	29.921	0.81883	30	29.646	30.465	0.078346					45	19	4	0	0	0	0.023655	1	1836	1836		60.118	22.959	1	1498100			14401	9882	10155	10173	15725	15725					0.06578323240432837
ETALRARP	8	Unmodified	_ETALRARP_					0	0	0		ENST00000441006.5_1_22:17518101-17525767:+|nuORF	ENST00000441006.5_1_22:17518101-17525767:+|nuORF	ENST00000441006.5_1_22:17518101-17525767:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2626953125	2	457.264333	912.514114	0.63632	0.00029097	-0.47227	-0.00021595	0.16405	7.5016E-05	457.26397671314425	84.191	1.7711	84.032	83.671	85.442	-0.15869					90	41	3	0	0	0	0.99042	1	10201	10201		38.806	4.6336	1	896490			14402	14353	10156	10174	15726	15726					0.054357228488470355
ETAMSPPDKTA	11	Unmodified	_ETAMSPPDKTA_					0	0	0			REV__ENSG00000164530|ENST00000373674|PI16	REV__ENSG00000164530|ENST00000373674|PI16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7684326171875	2	574.268621	1146.52269	-0.15167	-8.7098E-05	-1.8579	-0.001067	-2.0096	-0.0011541	574.2676678651553	99.916	2.0221	99.745	97.899	99.921	-0.17088					102	50	3	0	0	0	1.0022	1	12322	12322		36.318	1.1656	1	216300	+		14403	25767	10157	10175	15727	15727					-0.04471136087499872
ETAQRLLL	8	Unmodified	_ETAQRLLL_					0	0	0		nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2632141113281	2	472.282192	942.549831	-0.25643	-0.00012111	-0.85913	-0.00040575	-1.1156	-0.00052686	472.2815020799105	62.619	0.74983	62.619	62.446	63.196	0					43	18	4	0	0	0	0.027866	1	7279	7279		76.847	0	1	2351800			14404	3990	10158	10176	15728	15728					0.0762576030585933
ETASTYVSA	9	Unmodified	_ETASTYVSA_					0	0	0			REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7641296386719	2	464.716547	927.418542	-0.61793	-0.00028716	-3.7822	-0.0017576	-4.4001	-0.0020448	464.7145912758964	33.629	0.10772	33.629	33.554	33.662	0					4	2	2	0	0	0	0.024323	1	2441	2441		35.618	0	1	29050	+		14405	21862	10159	10177	15729	15729					-0.048070948526969914
ETCDSEISEAP	11	Unmodified	_ETCDSEISEAP_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	590.7796630859375	2	590.737351	1179.46015	0.011593	6.8484E-06	-0.51278	-0.00030292	-0.50119	-0.00029607	590.7361457404235	84.436	0.12904	84.232	84.124	84.253	-0.20329					4	2	2	0	0	0	0.024749	1	10195	10195		19.104	0	1	25366			14406	882	10160	10178	15730	15730					-0.12240326946357527
ETCILENLL	9	Unmodified	_ETCILENLL_					0	0	0		ENST00000409111.2_1_2:197184567-197194349:-|nuORF	ENST00000409111.2_1_2:197184567-197194349:-|nuORF	ENST00000409111.2_1_2:197184567-197194349:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.29736328125	2	524.273175	1046.5318	0.19598	0.00010275	-3.1978	-0.0016765	-3.0018	-0.0015738	524.2711965676905	103.3	1.1232	103.29	102.9	104.02	-0.0046005					45	26	2	0	0	0	0.019436	1	13151	13151		85.161	0	1	233170			14407	13763	10161	10179	15731	15731					0.01039257268826077
ETCLHQAAALG	11	Unmodified	_ETCLHQAAALG_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000528173.5_1_11:46400622-46401494:+|nuORF;ENST00000534802.1_1_11:46400234-46401494:+|nuORF	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2294921875	2	557.271498	1112.52844	-0.95258	-0.00053085	1.2845	0.0007158	0.33189	0.00018495	557.2721473891755	44.006	0.92043	43.762	43.054	43.975	-0.2444					34	23	2	0	0	0	0.024787	1	3966	3966		41.427	0	1	160930			14408	6062	10162	10180	15732	15732					-0.023319927851844113
ETCLRLLSL	9	Unmodified	_ETCLRLLSL_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;ENST00000579536.1_1_17:27908354-27909910:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1	nc|ENSG00000139436|Q14161-10|GIT2;ENST00000579536.1_1_17:27908354-27909910:-|nuORF	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.297119140625	2	524.296985	1046.57942	0.31866	0.00016707	0.32581	0.00017082	0.64447	0.0003379	524.2970509151143	100.44	1.3456	100.44	100.01	101.36	-0.0050812					96	34	5	0	0	0	0.42604	1	12809	12809		64.207	6.396	1	3281700			14409	18329;2885	10163	10181	15733	15733					0.05798956259695842
ETCQVIGCEK	10	Unmodified	_ETCQVIGCEK_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.2640991210938	2	555.251917	1108.48928	-0.68461	-0.00038013	-0.18556	-0.00010303	-0.87017	-0.00048316	555.2518920286564	32.108	0.46941	32.12	31.943	32.413	0.011799					21	11	3	0	0	0	0.03519	1	2157	2157		19.104	0	1	257150			14410	7601	10164	10182	15734	15734					-0.06062461131045893
ETCYTVAII	9	Unmodified	_ETCYTVAII_					0	0	0		nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7926025390625	2	506.754618	1011.49468	-1.2342	-0.00062544	-3.7077	-0.0018789	-4.9419	-0.0025043	506.75209943036543	44.332	0.13295	44.332	44.215	44.348	0					6	3	2	0	0	0	0.024205	1	4213	4213		63.306	0	1	188230			14411	18622	10165	10183	15735	15735					-0.010604142769125247
ETDEGDKAQD	10	Unmodified	_ETDEGDKAQD_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3032836914062	2	554.225465	1106.43638	-0.88711	-0.00049166	1.1434	0.00063369	0.25626	0.00014203	554.2259947515282	35.903	1.0633	35.903	35.235	36.298	0					46	28	2	0	0	0	0.03519	1	2859	2859		51.193	23.31	1	152030			14412	8376	10166	10184	15736	15736					-0.11258424388506683
ETDFYLQSV	9	Unmodified	_ETDFYLQSV_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.31787109375	2	551.258579	1100.50261	-0.18615	-0.00010262	0.38097	0.00021001	0.19481	0.00010739	551.2585305804284	64.453	0.7874	64.25	63.99	64.778	-0.20253					38	19	3	0	0	0	0.021513	1	7314	7314		93.195	20.316	1	367470			14413	5857	10167	10185	15737	15737					-0.04362563755807969
ETDFYLQSV	9	Unmodified	_ETDFYLQSV_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.258579	1100.50261	0.9788	0.00053957	-0.58675	-0.00032345	0.39205	0.00021612	551.2577444534634	64.071	0.50163	64.071	63.81	64.311	0	-0.12189	-0.0011494	NaN	93.195	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153050			14414	5857	10167	10185							-0.04362563755807969
ETDFYLQSV	9	Unmodified	_ETDFYLQSV_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.258579	1100.50261	-0.85045	-0.00046882	0.42343	0.00023342	-0.42701	-0.00023539	551.2586492590096	64.441	0.36462	64.178	63.976	64.341	-0.2626	-0.014021	-3.5639E-05	NaN	93.195	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85362			14415	5857	10167	10185							-0.04362563755807969
ETDFYLQSV	9	Unmodified	_ETDFYLQSV_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.258579	1100.50261	0.8328	0.00045909	-1.3783	-0.00075978	-0.54547	-0.00030069	551.2577200279997	64.056	0.39776	64.101	63.975	64.372	0.045502	-0.091284	-0.002022	NaN	93.195	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119540			14416	5857	10167	10185							-0.04362563755807969
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.2781982421875	2	595.277835	1188.54112	-0.41579	-0.00024751	-0.071315	-4.2452E-05	-0.48711	-0.00028996	595.2778050045983	45.918	0.6583	45.821	45.529	46.187	-0.096653					50	17	4	0	0	0	0.52982	2	4388	4388;4399		84.916	37	1	2590800			14417	3192	10168	10186	15738;15739	15738					-0.045612581212935766
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.2778930664062	2	595.277835	1188.54112	-0.91612	-0.00054534	0.47743	0.0002842	-0.43869	-0.00026114	595.2780563201645	46.109	0.71918	45.847	45.593	46.313	-0.26118					44	18	3	0	0	0	0.42446	1	4417	4417		96.19	24.313	1	2267800			14418	3192	10168	10186	15740	15740					-0.045612581212935766
ETDHINQIGY	10	Unmodified	_ETDHINQIGY_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.2784423828125	2	595.277835	1188.54112	-1.1907	-0.0007088	0.75133	0.00044725	-0.43937	-0.00026155	595.2781934134641	46.04	0.70198	45.837	45.528	46.23	-0.20226					42	18	3	0	0	0	0.23335	2	4409	4399;4409		116.9	60.183	1	2866900			14419	3192	10168	10186	15741;15742	15742					-0.045612581212935766
ETDKNGFLQY	10	Unmodified	_ETDKNGFLQY_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.7884521484375	2	607.788035	1213.56152	-1.0065	-0.00061173	0.40549	0.00024645	-0.601	-0.00036528	607.788374474166	53.34	2.0969	53.213	52.833	54.93	-0.12705					154	59	7	0	0	0	0.0064244	6	5596	5560;5572;5584;5596;5608;5622		176.09	85.486	1	45939000			14420	18155	10169	10187	15743;15744;15745;15746;15747;15748	15746					-0.03672087461472984
ETDKNGFLQY	10	Unmodified	_ETDKNGFLQY_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.788330078125	2	607.788035	1213.56152	-0.35955	-0.00021853	-0.25877	-0.00015728	-0.61832	-0.00037581	607.7879029463525	53.539	1.5799	53.281	52.922	54.502	-0.25839					123	46	6	0	0	0	0.0064244	6	5607	5583;5595;5607;5620;5632;5647		176.09	77.457	1	50342000			14421	18155	10169	10187	15749;15750;15751;15752;15753;15754	15751					-0.03672087461472984
ETDKNGFLQY	10	Unmodified	_ETDKNGFLQY_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.7876586914062	2	607.788035	1213.56152	-0.3946	-0.00023983	-0.50461	-0.0003067	-0.89921	-0.00054653	607.7878403401219	53.38	1.8334	53.191	52.868	54.701	-0.18985					146	51	6	0	0	0	0.014535	6	5607	5559;5571;5583;5595;5607;5620		167.23	79.474	1	46577000			14422	18155	10169	10187	15755;15756;15757;15758;15759;15760	15759					-0.03672087461472984
ETDNMFNRY	9	Unmodified	_ETDNMFNRY_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.2500610351562	2	595.250763	1188.48697	-1.3616	-0.00081047	0.83366	0.00049624	-0.5279	-0.00031423	595.2511700706086	48.657	0.74183	48.556	48.288	49.029	-0.1008					58	19	5	0	0	0	0.12602	1	4842	4842		104.75	41.44	1	2250800			14423	2972	10170	10188	15761	15761					-0.09973173544494784
ETDNMFNRY	9	Unmodified	_ETDNMFNRY_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.2506103515625	2	595.250763	1188.48697	-1.2574	-0.00074848	0.89229	0.00053114	-0.36513	-0.00021735	595.2511565313031	48.96	0.69584	48.68	48.465	49.161	-0.27977					49	18	4	0	0	0	0.10174	2	4879	4879;4891		110.12	54.616	1	2562900			14424	2972	10170	10188	15762;15763	15762					-0.09973173544494784
ETDNMFNRY	9	Unmodified	_ETDNMFNRY_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103612112-103682069:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.2505493164062	2	595.250763	1188.48697	-0.67548	-0.00040208	0.29407	0.00017505	-0.38141	-0.00022704	595.2507860772221	48.796	0.77625	48.614	48.339	49.115	-0.18206					53	20	5	0	0	0	0.29158	1	4861	4861		76.774	17.992	1	2259600			14425	2972	10170	10188	15764	15764					-0.09973173544494784
ETDNMNQIY	9	Unmodified	_ETDNMNQIY_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.237060546875	2	564.237321	1126.46009	-0.050226	-2.8339E-05	-0.18525	-0.00010452	-0.23547	-0.00013286	564.2372953981823	52.81	1.1353	52.682	51.93	53.066	-0.12705					56	28	3	0	0	0	0.19099	1	5510	5510		90.37	27.391	1	620050			14426	900	10171	10189	15765	15765					-0.09808282155677261
ETDNMNQIY	9	Unmodified	_ETDNMNQIY_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.237321	1126.46009	0.49909	0.0002816	-1.1979	-0.0006759	-0.69881	-0.00039429	564.2367471419248	53.069	1.3054	52.81	52.065	53.37	-0.25838	0.059133	-0.00064916	NaN	90.37	58	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775230			14427	900	10171	10189							-0.09808282155677261
ETDNMNQIY	9	Unmodified	_ETDNMNQIY_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.237321	1126.46009	-0.12216	-6.8925E-05	-0.55812	-0.00031491	-0.68028	-0.00038384	564.2370646017054	52.95	1.2883	52.76	51.957	53.245	-0.18982	0.0094152	7.281E-05	NaN	90.37	57	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742730			14428	900	10171	10189							-0.09808282155677261
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7576293945312	2	533.756204	1065.49785	-0.52429	-0.00027984	0.54898	0.00029302	0.024695	1.3181E-05	533.7564215659442	58.897	1.1568	58.71	58.39	59.547	-0.18795					83	28	5	0	0	0	0.18915	3	6480	6470;6480;6493		90.777	16.802	1	6308300			14429	6157	10172	10190	15766;15767;15768	15767					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7572631835938	2	533.756204	1065.49785	-0.15271	-8.151E-05	0.02893	1.5442E-05	-0.12378	-6.6068E-05	533.7561266004002	58.912	1.1232	58.731	58.426	59.549	-0.18134					80	27	5	0	0	0	0.18915	3	6486	6486;6496;6508		90.777	16.802	1	6587700			14430	6157	10172	10190	15769;15770;15771	15769					-0.03227447898552782
ETDNNIVVY	9	Unmodified	_ETDNNIVVY_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7572021484375	2	533.756204	1065.49785	0.24149	0.0001289	-0.35141	-0.00018757	-0.10992	-5.8669E-05	533.7559492735063	58.997	1.3673	58.756	58.173	59.54	-0.24165					94	33	5	0	0	0	0.18915	2	6480	6480;6492		90.777	24.973	1	6176100			14431	6157	10172	10190	15772;15773	15772					-0.03227447898552782
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(140)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.738037109375	2	587.737685	1173.46082	-1.0446	-0.00061393	1.2593	0.00074014	0.21474	0.00012621	587.7382397059484	26.075	0.83794	25.839	25.467	26.305	-0.23603					50	22	4	0	0	0	0.097953	3	1292	1292;1303;1315		136.27	70.465	1	1927200			14432	2187	10173	10191	15774;15775;15776	15774		83			-0.11897487506621474
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(140)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.7377319335938	2	587.737685	1173.46082	-1.3568	-0.00079743	1.3268	0.0007798	-0.03001	-1.7638E-05	587.7382550606604	28.876	5.6065	28.631	26.295	31.902	-0.24524					316	134	4	0	0	0	0.090646	11	1687	1645;1658;1687;1697;1710;1721;1732;1745;1758;1769;1784		138.06	78.457	1	2205500			14433	2187	10173	10191	15777;15778;15779;15780;15781;15782;15783;15784;15785;15786;15787	15779		83			-0.11897487506621474
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(170)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.7378540039062	2	587.737685	1173.46082	-1.3354	-0.00078486	1.1831	0.00069537	-0.15226	-8.9492E-05	587.7382481856747	28.759	5.3265	28.59	26.338	31.665	-0.16897					321	127	3	0	0	0	0.013215	8	1678	1667;1678;1690;1702;1714;1727;1739;1751		168.26	94.003	1	2418900			14434	2187	10173	10191	15788;15789;15790;15791;15792;15793;15794;15795	15789		83			-0.11897487506621474
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_		ETDRGM(1)SAEY		ETDRGM(160)SAEY	0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.7376098632812	2	587.737685	1173.46082	-1.0024	-0.00058913	0.88563	0.00052052	-0.11675	-6.8617E-05	587.7380655464805	28.554	5.1769	28.402	26.318	31.495	-0.15195					302	125	5	0	0	0	0.029455	11	1659	1609;1620;1639;1649;1659;1671;1684;1697;1710;1722;1741		155.58	85.957	1	3318200			14435	2187	10173	10191	15796;15797;15798;15799;15800;15801;15802;15803;15804;15805;15806	15800		83			-0.11897487506621474
ETDRGMSAEY	10	Oxidation (M)	_ETDRGM(Oxidation (M))SAEY_					0	0	1		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	587.737685	1173.46082	-0.99809	-0.00058662	1.7207	0.0010113	0.72258	0.00042469	587.7384468641015	25.895	0.48258	25.725	25.413	25.896	-0.17078	-0.057289	0.00048841	NaN	136.27	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141710			14436	2187	10173	10191				83			-0.11897487506621474
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.740234375	2	579.740228	1157.4659	-0.32922	-0.00019086	-0.2939	-0.00017039	-0.62312	-0.00036125	579.740091450915	35.371	0.94169	35.156	34.833	35.775	-0.21556					73	24	5	0	0	0	0.029455	5	2698	2663;2674;2686;2698;2712		155.58	57.401	1	13303000			14437	2187	10173	10192	15807;15808;15809;15810;15811	15810					-0.10653183643989905
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.7399291992188	2	579.740228	1157.4659	-1.1079	-0.00064229	0.586	0.00033973	-0.5219	-0.00030257	579.740582198967	35.322	1.0173	35.109	34.766	35.783	-0.21246					75	26	4	0	0	0	0.01976	5	2662	2651;2662;2673;2686;2701		163.15	49.739	1	13920000			14438	2187	10173	10192	15812;15813;15814;15815;15816	15813					-0.10653183643989905
ETDRGMSAEY	10	Unmodified	_ETDRGMSAEY_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.73974609375	2	579.740228	1157.4659	-0.93684	-0.00054312	0.24928	0.00014452	-0.68756	-0.00039861	579.7403823705644	35.204	0.87285	35.017	34.681	35.554	-0.18675					74	22	5	0	0	0	0.0062945	4	2638	2627;2638;2649;2663		176.44	77.07	1	13384000			14439	2187	10173	10192	15817;15818;15819;15820	15818					-0.10653183643989905
ETDVLFLSY	9	Unmodified	_ETDVLFLSY_					0	0	0			REV__nc|ENSG00000003393|Q96Q42-3|ALS2	REV__nc|ENSG00000003393|Q96Q42-3|ALS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.81689453125	2	543.771322	1085.52809	0.04629	2.5171E-05	1.3245	0.00072021	1.3708	0.00074538	543.7718204228673	74.394	0.45838	74.131	73.859	74.318	-0.26326					25	10	3	0	0	0	0.024294	1	8754	8754		37.159	12.956	1	1249300	+		14440	19770	10174	10193	15821	15821					-0.011250892333691809
ETEALNGEL	9	Unmodified	_ETEALNGEL_					0	0	0			REV__TPT1-KRT17|1|fusion	REV__TPT1-KRT17|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2356872558594	2	488.235104	974.455655	-1.1445	-0.0005588	1.3127	0.0006409	0.16815	8.2095E-05	488.2359315898476	83.515	1.1607	83.541	83.173	84.334	0.026558					66	26	3	0	0	0	0.31037	1	10361	10361		74.255	0.28031	1	1513700	+	+	14441	37724	10175	10194	15822	15822					-0.03259423306951703
ETEDTQMVS	9	Unmodified	_ETEDTQMVS_					0	0	0		MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2412719726562	2	520.216054	1038.41756	0.050155	2.6092E-05	3.7809	0.0019669	3.8311	0.001993	520.7192016541605	75.688	0.17785	75.699	75.61	75.788	0.011635					6	4	2	0	0	0	0.024477	1	9217	9217		44.117	22.157	1	48419			14442	4346;16047	10176	10195	15823	15823					-0.10011677283910103
ETEEKELII	9	Unmodified	_ETEEKELII_					0	0	0			REV__ENSG00000196419|ENST00000360079|XRCC6	REV__ENSG00000196419|ENST00000360079|XRCC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8182983398438	2	552.295162	1102.57577	0.64483	0.00035614	3.9254	0.002168	4.5703	0.0025241	552.2970211471252	63.002	0.87978	63.056	62.64	63.519	0.054104					39	22	3	0	0	0	0.024523	1	7219	7219		15.642	0	1	456600	+		14443	28180	10177	10196	15824	15824					0.028585649668229962
ETEFGSPSEL	10	Unmodified	_ETEFGSPSEL_					0	0	0		ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	ENSG00000141499|ENST00000396463|WRAP53	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2515869140625	2	548.245669	1094.47678	-0.56191	-0.00030806	-2.2708	-0.001245	-2.8327	-0.001553	548.2443192759249	52.176	0.80136	52.176	51.871	52.673	0					48	20	3	0	0	0	0.71272	1	5585	5585		66.429	8.1994	1	2002200			14444	5498	10178	10197	15825	15825					-0.06667457998082682
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.7716674804688	2	587.772385	1173.53022	-0.54763	-0.00032188	0.28318	0.00016644	-0.26446	-0.00015544	587.7724378962982	32.834	0.65166	32.602	32.304	32.956	-0.23107					43	15	4	0	0	0	0.17845	2	2292	2292;2303		93.143	33.025	1	1683500			14445	961	10179	10198	15826;15827	15826					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.771728515625	2	587.772385	1173.53022	-0.70887	-0.00041665	0.19413	0.0001141	-0.51474	-0.00030255	587.7723871687458	32.993	0.60442	32.793	32.528	33.133	-0.20019					45	14	4	0	0	0	0.2101	2	2310	2310;2320		87.696	27.578	1	1950400			14446	961	10179	10198	15828;15829	15828					-0.049606604955670264
ETEKDFSRY	9	Unmodified	_ETEKDFSRY_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.7721557617188	2	587.772385	1173.53022	-0.88506	-0.00052021	0.54267	0.00031896	-0.34239	-0.00020125	587.7725901603173	32.723	0.56277	32.561	32.28	32.843	-0.16182					43	13	4	0	0	0	0.086035	3	2268	2257;2268;2281		115.49	55.376	1	1753000			14447	961	10179	10198	15830;15831;15832	15831					-0.049606604955670264
ETEKLCDY	8	Unmodified	_ETEKLCDY_					0	0	0		nc|ENSG00000125967|Q96P71-3|NECAB3;ENST00000488489.5_1_20:32247922-32262169:-|nuORF;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3	nc|ENSG00000125967|Q96P71-3|NECAB3	nc|ENSG00000125967|Q96P71-3|NECAB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7161865234375	2	500.718233	999.421912	0.35687	0.00017869	-3.6882	-0.0018468	-3.3314	-0.0016681	500.7162730581738	71.217	0.95876	71.011	70.659	71.618	-0.20614					57	22	4	0	0	0	0.95679	1	8301	8301		44.117	8.4985	1	2890400			14448	4168	10180	10199	15833	15833					-0.07782168070366424
ETEKLTKKIK	10	Unmodified	_ETEKLTKKIK_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.5873107910156	3	406.586972	1216.73909	0.3256	0.00013238	0.26843	0.00010914	0.59403	0.00024152	406.5873231361823	25.27	2.8978	25.098	24.732	27.63	-0.17151					174	72	6	0	0	0	1.0275	1	1179	1179		42.338	0	1	31222000			14449	14444	10181	10200	15834	15834					0.1393878780850173
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.7886962890625	2	585.789189	1169.56383	-0.37792	-0.00022138	-0.37041	-0.00021698	-0.74833	-0.00043836	585.7892502041533	33.936	0.85405	33.712	33.404	34.258	-0.22412					83	21	5	0	0	0	0.056725	2	2448	2448;2470		126.24	7.8776	1	3853700			14450	3431;1419	10182	10201	15835;15836	15835					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.7888793945312	2	585.789189	1169.56383	-1.0884	-0.00063756	0.14758	8.6448E-05	-0.9408	-0.00055111	585.7896189604778	33.856	0.92377	33.656	33.325	34.249	-0.20019					81	23	6	0	0	0	0.041068	1	2452	2452		132.76	1.7265	1	4535200			14451	3431;1419	10182	10201	15837	15837					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.7888793945312	2	585.789189	1169.56383	-1.8317	-0.001073	1.018	0.00059632	-0.81372	-0.00047667	585.7900788339412	33.83	1.1055	33.655	33.268	34.374	-0.17557					91	27	5	0	0	0	0.034407	3	2419	2419;2428;2440		138.06	16.01	1	4126600			14452	3431;1419	10182	10201	15838;15839;15840	15838					-0.014173750480040326
ETEKMIEKY	9	Unmodified	_ETEKMIEKY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000070182|P11277-3|SPTB	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	585.789189	1169.56383	0.76733	0.00044949	4.703	0.002755	5.4703	0.0032045	586.2936690724106	33.497	0.50761	33.553	33.423	33.931	0.056568	-0.090777	0.0045503	NaN	138.06	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95778			14453	3431;1419	10182	10201							-0.014173750480040326
ETELDGLRY	9	Unmodified	_ETELDGLRY_					0	0	0		nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882|ENST00000294973|HAAO	nc|ENSG00000162882|P46952-2|HAAO	nc|ENSG00000162882|P46952-2|HAAO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.269775390625	2	548.269478	1094.5244	-1.1061	-0.00060646	0.89088	0.00048844	-0.21526	-0.00011802	548.2699011727349	55.712	1.4258	55.556	54.789	56.215	-0.15656					118	38	5	0	0	0	0.020687	5	5998	5976;5986;5998;6011;6026		148.99	72.509	1	10672000			14454	7005	10183	10202	15841;15842;15843;15844;15845	15843					-0.019077590072356543
ETELDGLRY	9	Unmodified	_ETELDGLRY_					0	0	0		nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882|ENST00000294973|HAAO	nc|ENSG00000162882|P46952-2|HAAO	nc|ENSG00000162882|P46952-2|HAAO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.2694702148438	2	548.269478	1094.5244	-0.15277	-8.376E-05	-0.053519	-2.9343E-05	-0.20629	-0.0001131	548.2694257914882	55.761	1.1451	55.545	55.012	56.157	-0.21607					116	31	5	0	0	0	0.015901	5	6009	5985;5997;6009;6022;6037		157.33	77.39	1	11081000			14455	7005	10183	10202	15846;15847;15848;15849;15850	15848					-0.019077590072356543
ETELDGLRY	9	Unmodified	_ETELDGLRY_					0	0	0		nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882|ENST00000294973|HAAO	nc|ENSG00000162882|P46952-2|HAAO	nc|ENSG00000162882|P46952-2|HAAO	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.2691650390625	2	548.269478	1094.5244	-1.2863	-0.00070522	0.95364	0.00052285	-0.33262	-0.00018237	548.269974586327	55.765	1.0228	55.549	55.136	56.158	-0.21551					122	27	6	0	0	0	0.015064	5	5997	5974;5985;5997;6009;6023		190.52	93.045	1	11442000			14456	7005	10183	10202	15851;15852;15853;15854;15855	15853					-0.019077590072356543
ETELIDVIY	9	Unmodified	_ETELIDVIY_					0	0	0			REV__ENST00000320876.10_2_18:2688638-2694582:+|nuORF	REV__ENST00000320876.10_2_18:2688638-2694582:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.7776489257812	2	547.78443	1093.55431	-0.86188	-0.00047212	-3.1986	-0.0017521	-4.0605	-0.0022243	547.7832158584399	33.792	2.1145	33.849	33.279	35.394	0.056568					46	15	4	0	0	0	0.024506	1	2528	2528		38.806	0	1	1025300	+		14457	30337	10184	10203	15856	15856					0.011271799381120218
ETELPSSQNVS	11	Unmodified	_ETELPSSQNVS_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.7805786132812	2	595.780407	1189.54626	-0.11159	-6.6481E-05	1.0396	0.00061934	0.92797	0.00055286	595.7810079684642	22.222	0.55803	22.033	21.769	22.327	-0.18894					30	11	4	0	0	0	0.97926	1	781	781		41.427	0.64845	1	440200			14458	7259	10185	10204	15857	15857					-0.04092999049316859
ETEPDWVKVMF	11	Unmodified	_ETEPDWVKVMF_					0	0	0			REV__ENST00000603821.1_1_4:153247094-153249553:-|nuORF	REV__ENST00000603821.1_1_4:153247094-153249553:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.7589416503906	3	460.888323	1379.64314	0.2558	0.00011789	-0.45201	-0.00020833	-0.19622	-9.0434E-05	460.8880546542717	36.899	0.46445	36.836	36.588	37.052	-0.063385					17	11	2	0	0	0	0.024845	1	2924	2924		10.104	4.1029	1	173610	+		14459	21806	10186	10205	15858	15858					-0.031497280938992844
ETEPTNKDI	9	Unmodified	_ETEPTNKDI_					0	0	0		ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.263916015625	2	523.753661	1045.49277	0.03484	1.8248E-05	-2.4612	-0.001289	-2.4263	-0.0012708	523.7522509201959	54.656	0.42483	54.425	54.213	54.638	-0.23087					19	11	2	0	0	0	0.023635	1	5779	5779		66.429	0.96389	1	196210			14460	6614	10187	10206	15859	15859					-0.02815751761181673
ETEQLAANIN	10	Unmodified	_ETEQLAANIN_					0	0	0			REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8175048828125	2	551.772385	1101.53022	-0.61327	-0.00033838	-4.151	-0.0022904	-4.7643	-0.0026288	552.2707099838793	41.678	0.39672	41.546	41.319	41.716	-0.13219					15	10	2	0	0	0	0.03519	1	3775	3775		44.377	3.599	1	115930	+		14461	22191	10188	10207	15860	15860					-0.016486604955616713
ETEQLKSLGVS	11	Unmodified	_ETEQLKSLGVS_					0	0	0			REV__ENST00000509377.1_3_4:77172961-77230323:+|nuORF	REV__ENST00000509377.1_3_4:77172961-77230323:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.7959594726562	2	595.816793	1189.61903	-1.2052	-0.00071807	-4.3358	-0.0025834	-5.541	-0.0033014	595.8144554713512	60.947	0.3074	60.693	60.544	60.852	-0.25373					12	7	2	0	0	0	0.02475	1	6810	6810		21.686	0	1	74201	+		14462	28103	10189	10208	15861	15861					0.03180754744107617
ETERIVTTY	9	Unmodified	_ETERIVTTY_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.2846069335938	2	556.285128	1110.5557	-0.23387	-0.0001301	0.058039	3.2286E-05	-0.17583	-9.781E-05	556.285057785117	43.277	0.79919	43.164	42.854	43.653	-0.11253					60	21	5	0	0	0	0.014454	1	3959	3959		185.55	92.354	1	4434100			14463	1675	10190	10209	15862	15862					0.0048481402686775255
ETERIVTTY	9	Unmodified	_ETERIVTTY_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.2852172851562	2	556.285128	1110.5557	-0.5789	-0.00032203	0.33618	0.00018701	-0.24271	-0.00013502	556.2851833592613	43.452	0.87983	43.215	42.917	43.797	-0.23736					68	23	5	0	0	0	0.014918	2	3970	3970;3985		162.25	60.652	1	4450500			14464	1675	10190	10209	15863;15864	15863					0.0048481402686775255
ETERIVTTY	9	Unmodified	_ETERIVTTY_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;ENST00000587329.1_1_19:10909095-10913035:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.28515625	2	556.285128	1110.5557	-0.99943	-0.00055597	0.64678	0.0003598	-0.35264	-0.00019617	556.2853258350896	43.47	0.79042	43.244	42.912	43.703	-0.22597					66	21	5	0	0	0	0.013293	2	3978	3967;3978		176.09	75.834	1	4882300			14465	1675	10190	10209	15865;15866	15866					0.0048481402686775255
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.2554931640625	2	571.254025	1140.4935	-0.35783	-0.00020441	-0.032117	-1.8347E-05	-0.38995	-0.00022276	571.2539121237618	40.105	0.73582	39.956	39.668	40.404	-0.1497					58	19	5	0	0	0	0.013293	3	3443	3443;3456;3469		205.58	90.123	1	4886200			14466	777	10191	10210	15867;15868;15869	15867					-0.07112957112144613
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.2544555664062	2	571.254025	1140.4935	-0.037506	-2.1426E-05	-0.33896	-0.00019363	-0.37647	-0.00021506	571.2537322082266	40.282	0.59568	40.057	39.773	40.368	-0.225					49	15	4	0	0	0	0.013293	3	3474	3461;3474;3487		205.58	99.167	1	5044100			14467	777	10191	10210	15870;15871;15872	15871					-0.07112957112144613
ETERLTDDY	9	Unmodified	_ETERLTDDY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.254150390625	2	571.254025	1140.4935	-0.87376	-0.00049914	0.62661	0.00035795	-0.24715	-0.00014119	571.2542844585005	40.282	1.1148	40.052	39.771	40.886	-0.23021					63	29	4	0	0	0	0.013293	3	3471	3448;3459;3471		209.84	103.42	1	4709000			14468	777	10191	10210	15873;15874;15875	15875					-0.07112957112144613
ETESHCVAQA	10	Unmodified	_ETESHCVAQA_					0	0	0		ENST00000344548.7_3_1:22379169-22400700:+|nuORF	ENST00000344548.7_3_1:22379169-22400700:+|nuORF	ENST00000344548.7_3_1:22379169-22400700:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7581176757812	2	537.729663	1073.44477	-0.81753	-0.00043961	-1.3044	-0.00070142	-2.1219	-0.001141	537.7289767805842	39.413	0.45074	39.249	39.008	39.458	-0.16459					25	11	3	0	0	0	0.03519	1	3328	3328		25.574	15.309	1	312660			14469	12552	10192	10211	15876	15876					-0.08901148952872973
ETESLGFIQ	9	Unmodified	_ETESLGFIQ_					0	0	0			REV__ENSG00000256713|ENST00000312403|PGA5	REV__ENSG00000256713|ENST00000312403|PGA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7879638671875	2	512.253297	1022.49204	0.12069	6.1823E-05	-0.45924	-0.00023525	-0.33855	-0.00017342	512.252735075538	71.201	0.53344	70.929	70.658	71.191	-0.27185					24	11	3	0	0	0	0.023417	1	8315	8315		68.787	10.005	1	396610	+		14470	28888	10193	10212	15877	15877					-0.01830546410212719
ETESLGFIQ	9	Unmodified	_ETESLGFIQ_					0	0	0			REV__ENSG00000256713|ENST00000312403|PGA5	REV__ENSG00000256713|ENST00000312403|PGA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7883911132812	2	512.253297	1022.49204	0.584	0.00029916	-0.52562	-0.00026925	0.058382	2.9906E-05	512.252867120557	71.017	0.56799	70.802	70.606	71.174	-0.21425					25	12	4	0	0	0	0.024319	1	8307	8307		47.657	13.485	1	654040	+		14471	28888	10193	10212	15878	15878					-0.01830546410212719
ETETEGLISV	10	Unmodified	_ETETEGLISV_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7998657226562	2	539.269144	1076.52373	-0.5649	-0.00030463	-2.6894	-0.0014503	-3.2543	-0.0017549	539.2678361460253	68.613	0.81228	68.383	68.116	68.929	-0.23048					23	19	2	0	0	0	0.03519	1	7892	7892		32.812	11.127	1	644400	+		14472	26116	10194	10213	15879	15879					-0.011465984469396062
ETEWELRQI	9	Unmodified	_ETEWELRQI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19566287-19566919:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	401.871337890625	3	401.87166	1202.59315	0.19565	7.8625E-05	-0.67146	-0.00026984	-0.47582	-0.00019122	401.87121073341024	30.875	0.92385	30.887	30.458	31.382	0.011797					54	21	5	0	0	0	0.75397	1	2002	2002		42.396	0.058059	1	1261600			14473	4245	10195	10214	15880	15880					-4.0947075376607245E-05
ETFGMKYRDAF	11	Unmodified	_ETFGMKYRDAF_					0	0	0		ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.2692565917969	3	455.5483	1363.62307	-0.26318	-0.00011989	-1.743	-0.00079402	-2.0062	-0.00091391	455.5473701883473	27.918	0.27468	27.766	27.61	27.885	-0.15195					11	6	2	0	0	0	0.02477	1	1559	1559		17.167	5.5308	1	70503			14474	10113	10196	10215	15881	15881					-0.04419479033845164
ETFHKDYYEDL	11	Unmodified	_ETFHKDYYEDL_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2715148925781	3	487.217385	1458.63033	-0.87601	-0.00042681	-1.8437	-0.0008983	-2.7197	-0.0013251	487.2165625049401	21.344	0.53263	21.344	21.097	21.63	0					17	10	3	0	0	0	0.024828	1	649	649		18.531	4.445	1	13135	+		14475	22131	10197	10216	15882	15882					-0.08064467952431187
ETFLRSLP	8	Unmodified	_ETFLRSLP_					0	0	0		ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2611389160156	2	481.768917	961.523281	0.43405	0.00020911	-0.28518	-0.00013739	0.14886	7.1718E-05	481.7686779734877	87.535	0.61658	87.5	87.152	87.769	-0.035362					24	14	2	0	0	0	0.027866	1	10937	10937		27.882	0	1	563420			14476	8913	10198	10217	15883	15883					0.04098071414523474
ETFQPLINL	9	Unmodified	_ETFQPLINL_					0	0	0			REV__ENSG00000175809|ENST00000323684|CBLL2	REV__ENSG00000175809|ENST00000323684|CBLL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7968139648438	2	537.795132	1073.57571	-0.15802	-8.4984E-05	3.3972	0.001827	3.2392	0.001742	537.7968506342702	77.823	3.8719	77.613	76.789	80.661	-0.21087					197	92	3	0	0	0	0.51687	1	9575	9575		58.23	8.6939	1	2474600	+		14477	26975	10199	10218	15884	15884					0.04186609757448423
ETFSDREW	8	Unmodified	_ETFSDREW_					0	0	0			REV__ENST00000489671.5_2_3:141666651-141666756:-|nuORF	REV__ENST00000489671.5_2_3:141666651-141666756:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.8001708984375	2	535.232896	1068.45124	-0.6706	-0.00035892	-3.1748	-0.0016993	-3.8454	-0.0020582	535.2311138760691	55.303	0.36909	55.097	54.976	55.345	-0.20613					14	10	2	0	0	0	0.027866	1	5917	5917		51.335	20.832	1	154810	+		14478	33679	10200	10219	15885	15885					-0.08024887729879993
ETFVNLPSL	9	Unmodified	_ETFVNLPSL_					0	0	0		ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2657470703125	2	510.274032	1018.53351	-0.71431	-0.00036449	3.9147	0.0019976	3.2004	0.0016331	510.27555513784534	81.637	0.97887	81.662	81.168	82.146	0.02494					41	20	3	0	0	0	0.023817	1	10062	10062		51.335	7.2187	1	692880			14479	10561	10201	10220	15886	15886					0.02498634349092299
ETFVVIPIAL	10	Unmodified	_ETFVVIPIAL_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7799072265625	2	551.33135	1100.64815	-0.88281	-0.00048672	-3.7086	-0.0020447	-4.5914	-0.0025314	551.3295926517073	45.488	0.3347	45.339	45.148	45.483	-0.1488					18	9	2	0	0	0	0.03519	1	4376	4376		30.504	9.5567	1	285480	+		14480	20054	10202	10221	15887	15887					0.10184943831018245
ETGAFFLN	8	Unmodified	_ETGAFFLN_					0	0	0			REV__ENSG00000197838|ENST00000330436|CYP2A13	REV__ENSG00000197838|ENST00000330436|CYP2A13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7586975097656	2	449.718893	897.423233	-0.63033	-0.00028347	3.0705	0.0013809	2.4402	0.0010974	449.7204779840863	44.536	0.10201	44.536	44.485	44.587	0					4	2	2	0	0	0	0.027866	1	4252	4252		35.618	0	1	41861	+		14481	28351	10203	10222	15888	15888					-0.029581659192785992
ETGAYFIPT	9	Unmodified	_ETGAYFIPT_					0	0	0		MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3076477050781	2	499.745108	997.475663	0.25953	0.0001297	3.1699	0.0015841	3.4294	0.0017138	499.74648999333635	72.593	0.86134	72.593	72.211	73.072	0					35	20	2	0	0	0	0.02435	1	8878	8878		42.396	3.59	1	292710			14482	17968	10204	10223	15889	15889					-0.023176275763375997
ETGAYFIPT	9	Unmodified	_ETGAYFIPT_					0	0	0		MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.745108	997.475663	-0.050877	-2.5425E-05	3.8107	0.0019044	3.7599	0.001879	499.746642256494	72.924	1.4212	72.659	71.556	72.977	-0.26479	0.034314	0.00031645	NaN	47.657	50	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265680			14483	17968	10204	10223							-0.023176275763375997
ETGAYFIPT	9	Unmodified	_ETGAYFIPT_					0	0	0		MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|58|2|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.745108	997.475663	-0.77477	-0.00038719	3.8484	0.0019232	3.0736	0.001536	499.7468255066107	72.78	0.9692	72.581	71.909	72.878	-0.19811	-0.043497	0.00035405	NaN	47.657	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259490			14484	17968	10204	10223							-0.023176275763375997
ETGFWVSDPS	10	Unmodified	_ETGFWVSDPS_					0	0	0		ENST00000590346.5_1_17:58163371-58165578:-|nuORF	ENST00000590346.5_1_17:58163371-58165578:-|nuORF	ENST00000590346.5_1_17:58163371-58165578:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2731323242188	2	562.748379	1123.4822	-0.68849	-0.00038745	2.1007	0.0011822	1.4123	0.00079474	562.7494477753718	64.661	0.42928	64.406	64.152	64.582	-0.25563					17	10	2	0	0	0	0.03519	1	7315	7315		31.53	0	1	221150			14485	17330	10205	10224	15890	15890					-0.07459734415601815
ETGGSLEAR	9	Unmodified	_ETGGSLEAR_					0	0	0		ENST00000568697.1_1_16:57832362-57841656:+|nuORF	ENST00000568697.1_1_16:57832362-57841656:+|nuORF	ENST00000568697.1_1_16:57832362-57841656:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2708740234375	2	460.227613	918.440674	0.70168	0.00032293	-2.9535	-0.0013593	-2.2518	-0.0010364	460.22595092357136	43.332	0.76107	43.363	42.939	43.7	0.030827					42	20	3	0	0	0	0.024381	1	4021	4021		21.96	1.013	1	368650			14486	16991	10206	10225	15891	15891					-0.021808703842793875
ETGGYYRQGP	10	Unmodified	_ETGGYYRQGP_					0	0	0			REV__nc|ENSG00000176974|P34896-3|SHMT1	REV__nc|ENSG00000176974|P34896-3|SHMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2623901367188	2	564.259445	1126.50434	-0.48807	-0.0002754	0.3665	0.0002068	-0.12158	-6.86E-05	564.2595283962339	77.212	1.3372	77.05	76.7	78.037	-0.16196					55	31	3	0	0	0	0.98754	1	9155	9155		47.657	0	1	4599100	+		14487	27070	10207	10226	15892	15892					-0.05385509947177525
ETGIWQLT	8	Unmodified	_ETGIWQLT_					0	0	0		ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.2818298339844	2	474.245275	946.475997	-1.1455	-0.00054323	0.75695	0.00035898	-0.3885	-0.00018425	474.24537662416043	65.614	0.4525	65.401	65.135	65.588	-0.21327					18	10	2	0	0	0	0.027866	1	7490	7490		29.15	2.4566	1	89611			14488	6384	10208	10227	15893	15893					0.0006179214351504925
ETGKGPTLELA	11	Unmodified	_ETGKGPTLELA_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.30322265625	2	558.300778	1114.587	-0.20017	-0.00011175	4.3214	0.0024126	4.1212	0.0023009	558.3031535904216	16.894	0.29244	16.687	16.569	16.862	-0.20777					9	5	2	0	0	0	1.0718	1	113	113		19.104	0.84144	1	44865			14489	5705	10209	10228	15894	15894					0.034293870609417354
ETGKGPTLELA	11	Unmodified	_ETGKGPTLELA_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	558.300778	1114.587	1.453	0.00081123	3.0022	0.0016761	4.4552	0.0024873	558.302339799416	16.935	0.3015	16.781	16.656	16.957	-0.15376	0.037436	0.00090838	NaN	19.104	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60609			14490	5705	10209	10228							0.034293870609417354
ETGKGPTLELA	11	Unmodified	_ETGKGPTLELA_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	558.300778	1114.587	5.1699	0.0028864	-0.89206	-0.00049804	4.2779	0.0023883	558.3001720055087	17.013	0.31833	16.763	16.61	16.928	-0.25049	0.019315	-0.0034399	NaN	19.104	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71620			14491	5705	10209	10228							0.034293870609417354
ETGKMVLLLN	10	Unmodified	_ETGKMVLLLN_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.31787109375	2	559.317917	1116.62128	-1.0192	-0.00057006	0.31788	0.0001778	-0.70132	-0.00039226	559.3177430765417	64.892	1.0828	64.892	64.275	65.358	0					44	29	2	0	0	0	0.66532	1	7659	7659		69.628	0	1	2365500			14492	8414	10210	10229	15895	15895					0.06763511948224732
ETGPESSIIT	10	Unmodified	_ETGPESSIIT_					0	0	0		nc|ENSG00000187848|Q9UBL9-7|P2RX2;nc|ENSG00000187848|Q9UBL9-2|P2RX2;nc|ENSG00000187848|Q9UBL9-3|P2RX2;ENSG00000187848|ENST00000643471|P2RX2;nc|ENSG00000187848|Q9UBL9-4|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7836303710938	2	517.256037	1032.49752	-0.25118	-0.00012992	1.2086	0.00062517	0.95746	0.00049525	517.2564739809179	42.614	0.95205	42.382	41.971	42.923	-0.23186					56	24	4	0	0	0	0.03519	1	3775	3775		26.693	5.746	1	1434500			14493	9668	10211	10230	15896	15896					-0.017428676184181313
ETGPESSIIT	10	Unmodified	_ETGPESSIIT_					0	0	0		nc|ENSG00000187848|Q9UBL9-7|P2RX2;nc|ENSG00000187848|Q9UBL9-2|P2RX2;nc|ENSG00000187848|Q9UBL9-3|P2RX2;ENSG00000187848|ENST00000643471|P2RX2;nc|ENSG00000187848|Q9UBL9-4|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.256037	1032.49752	-0.33027	-0.00017083	1.0909	0.00056429	0.76067	0.00039346	517.2564219705517	42.621	0.84257	42.395	42.07	42.912	-0.22597	0.0061929	-5.9957E-05	NaN	14.137	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468700			14494	9668	10211	10230							-0.017428676184181313
ETGPLDILRTI	11	Unmodified	_ETGPLDILRTI_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8865051269531	3	409.902961	1226.68705	0.3274	0.0001342	-4.0571	-0.001663	-3.7297	-0.0015288	409.9014506602619	34.416	0.11608	34.412	34.336	34.452	-0.0045624					4	2	2	0	0	0	0.024723	1	2546	2546		37.6	13.368	1	36117	+		14495	28736	10212	10231	15897	15897					0.08277624394759187
ETGSSRDKASR	11	Unmodified	_ETGSSRDKASR_					0	0	0			REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	596.3145751953125	2	597.29709	1192.57963	-1.3285	-0.0007935	1.6166	0.0009656	0.28812	0.0001721	597.2981303438785	19.682	0.66524	19.682	19.511	20.176	0					20	13	2	0	0	0	0.024748	1	483	483		24.232	0	1	34728	+		14496	29675	10213	10232	15898	15898					-0.008959524867805158
ETGTPTVLPI	10	Unmodified	_ETGTPTVLPI_					0	0	0			REV__ENST00000310512.3_1_7:100027461-100027629:+|nuORF	REV__ENST00000310512.3_1_7:100027461-100027629:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.3035888671875	2	514.28714	1026.55973	-0.9934	-0.00051089	-4.0285	-0.0020718	-5.0219	-0.0025827	514.7854617843484	37.852	0.76196	37.634	37.066	37.828	-0.21849					37	19	3	0	0	0	0.03519	1	2976	2976		29.15	3.6994	1	198440	+		14497	30187	10214	10233	15899	15899					0.04750903520562133
ETGYSCDKL	9	Unmodified	_ETGYSCDKL_					0	0	0			REV__TFIP11|p.T446S|1|0.63|ENSG00000100109|chr22:26498969-26498969|T/A|missense_variant	REV__TFIP11|p.T446S|1|0.63|ENSG00000100109|chr22:26498969-26498969|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.8014221191406	2	508.223682	1014.43281	-0.55125	-0.00028016	0.53398	0.00027138	-0.017266	-8.7748E-06	508.22378280865183	54.977	0.59794	55.075	54.696	55.294	0.098015					21	16	2	0	0	0	0.023837	1	5995	5995		64.207	33.704	1	190010	+		14498	37686	10215	10234	15900	15900					-0.07382765696070237
ETHDPLFR	8	Unmodified	_ETHDPLFR_					0	0	0			REV__ENSG00000186204|ENST00000550308|CYP4F12	REV__ENSG00000186204|ENST00000550308|CYP4F12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.29876708984375	2	507.753798	1013.49304	-0.40111	-0.00020367	2.9293	0.0014874	2.5282	0.0012837	507.7551054119484	25.528	1.3298	25.356	24.556	25.886	-0.17151					41	31	2	0	0	0	0.027866	1	1212	1212		24.203	6.8378	1	119300	+		14499	27837	10216	10235	15901	15901					-0.013162872506768508
ETHDPLFR	8	Unmodified	_ETHDPLFR_					0	0	0			REV__ENSG00000186204|ENST00000550308|CYP4F12	REV__ENSG00000186204|ENST00000550308|CYP4F12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.753798	1013.49304	-0.59445	-0.00030184	3.4426	0.001748	2.8482	0.0014462	507.7552544236998	25.86	1.3506	25.624	24.656	26.007	-0.23603	0.13387	0.00043743	NaN	17.365	51	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126550	+		14500	27837	10216	10235							-0.013162872506768508
ETHESSTMVMV	11	Unmodified	_ETHESSTMVMV_					0	0	0			REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.90325927734375	3	417.517901	1249.53187	0.10237	4.2741E-05	3.8417	0.001604	3.944	0.0016467	417.51935505245154	32.997	1.3125	32.797	31.935	33.247	-0.20019					59	31	3	0	0	0	0.024735	1	2190	2190		38.754	2.436	1	322660	+		14501	25531	10217	10236	15902	15902					-0.08291110793493317
ETHIRVPA	8	Unmodified	_ETHIRVPA_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.75897216796875	2	461.758884	921.503215	-0.31671	-0.00014624	-0.31944	-0.0001475	-0.63615	-0.00029375	461.758750729972	30.801	1.7244	30.812	30.458	32.182	0.011797					116	41	4	0	0	0	0.91239	1	2017	2017		50.025	0	1	19668000			14502	6731	10218	10237	15903	15903					0.039323204745642215
ETHIRVPA	8	Unmodified	_ETHIRVPA_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7590026855469	2	461.758884	921.503215	-0.078002	-3.6018E-05	-0.63106	-0.0002914	-0.70906	-0.00032741	461.75862449237707	30.573	1.8856	30.647	30.17	32.056	0.074314					103	45	4	0	0	0	0.78609	1	1902	1902		60.294	6.9425	1	19081000			14503	6731	10218	10237	15904	15904					0.039323204745642215
ETHPLKIGL	9	Unmodified	_ETHPLKIGL_					0	0	0			REV__ENSG00000154856|ENST00000355285|APCDD1	REV__ENSG00000154856|ENST00000355285|APCDD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.29754638671875	2	504.297842	1006.58113	-0.31658	-0.00015965	-1.8243	-0.00091999	-2.1409	-0.0010796	504.29633338861873	61.589	1.2254	61.589	60.996	62.222	0					90	32	5	0	0	0	0.85329	1	7160	7160		35.618	0	1	15843000	+		14504	24978	10219	10238	15905	15905					0.0781033333993264
ETHQLAELN	9	Unmodified	_ETHQLAELN_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2;SRRM2|p.A921Efs*27|1|0.11|ENSG00000167978|chr16:2763289-2763290|-/AACAAAACTGGAGGCTTCAAACTTC|frameshift_variant	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2398681640625	2	527.76182	1053.50909	-0.1775	-9.368E-05	2.2457	0.0011852	2.0682	0.0010915	527.7629247335122	63.94	0.54273	63.689	63.444	63.987	-0.25141					23	14	2	0	0	0	0.024397	1	7430	7430		39.253	12.56	1	344550			14505	7760	10220	10239	15906	15906					-0.015526258044246788
ETHSKGIL	8	Unmodified	_ETHSKGIL_					0	0	0			REV__ENSG00000114200|ENST00000264381|BCHE	REV__ENSG00000114200|ENST00000264381|BCHE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.7460632324219	2	442.745442	883.476331	-0.21612	-9.5685E-05	0.35163	0.00015568	0.13552	5.9999E-05	442.7454338414886	24.204	0.77222	24.03	23.524	24.296	-0.17484					39	17	4	0	0	0	0.59392	1	1025	1025		76.847	2.8719	1	1854100	+		14506	22110	10221	10240	15907	15907					0.02993211863383749
ETHTRQHIIL	10	Unmodified	_ETHTRQHIIL_					0	0	0			REV__ENSG00000147118|ENST00000376943|ZNF182	REV__ENSG00000147118|ENST00000376943|ZNF182	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.1904296875	3	416.566683	1246.67822	0.10598	4.4149E-05	0.80287	0.00033445	0.90886	0.0003786	416.56700229360314	51.179	0.60762	50.903	50.627	51.235	-0.27643					21	15	2	0	0	0	0.03519	1	5245	5245		27.047	8.5163	1	171190	+		14507	24529	10222	10241	15908	15908					0.06474695548968157
ETIDKLKMM	9	Unmodified	_ETIDKLKMM_					0	0	0		nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1	nc|ENSG00000100425|O95696|BRD1	nc|ENSG00000100425|O95696|BRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8316650390625	2	554.790678	1107.5668	0.15139	8.3992E-05	3.6639	0.0020327	3.8153	0.0021167	554.7925788635389	53.381	0.82832	53.123	52.683	53.512	-0.25838					66	21	4	0	0	0	0.024523	1	5543	5543		15.642	9.3292	1	2597000			14508	2201	10223	10242	15909	15909					0.017321768051260733
ETIDNLFF	8	Unmodified	_ETIDNLFF_					0	0	0			REV__ENSG00000151470|ENST00000425929|C4orf33	REV__ENSG00000151470|ENST00000425929|C4orf33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.71624755859375	2	499.745108	997.475663	0.1877	9.3804E-05	2.7094	0.001354	2.8971	0.0014478	500.24814181811837	71.641	0.818	71.366	71.011	71.829	-0.27509					23	19	2	0	0	0	0.027866	1	8332	8332		42.474	3.453	1	62612	+		14509	24773	10224	10243	15910	15910					-0.023176275763375997
ETIEERTL	8	Unmodified	_ETIEERTL_					0	0	0			REV__ENST00000466346.1_1_11:1973436-1974044:+|nuORF	REV__ENST00000466346.1_1_11:1973436-1974044:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.77655029296875	2	495.758746	989.50294	-0.79068	-0.00039198	4.2275	0.0020958	3.4368	0.0017038	495.76086184838357	27.828	0.40548	27.66	27.402	27.808	-0.16816					14	9	2	0	0	0	0.027866	1	1585	1585		76.774	0	1	41580	+		14510	33032	10225	10244	15911	15911					0.007768559640567219
ETIEVNEDGME	11	Unmodified	_ETIEVNEDGME_					0	0	0			REV__nc|ENSG00000212789|Q8NFI4|ST13P5	REV__nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.2662963867188	2	633.263733	1264.51291	0.29916	0.00018945	3.2889	0.0020827	3.5881	0.0022722	633.2659246060883	31.908	1.2692	31.92	31.624	32.893	0.011799					90	32	5	0	0	0	0.86757	2	2146	2146;2183		36.447	9.7538	1	3981800	+		14511	37123	10226	10245	15912;15913	15912					-0.1087636888353245
ETIEVNEDGME	11	Unmodified	_ETIEVNEDGME_					0	0	0			REV__nc|ENSG00000212789|Q8NFI4|ST13P5	REV__nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.26611328125	2	633.263733	1264.51291	-0.50951	-0.00032265	3.9952	0.00253	3.4857	0.0022074	633.2664544827835	31.64	1.0682	31.709	31.366	32.434	0.068962					78	26	5	0	0	0	0.84303	2	2093	2071;2093		37.812	15.5	1	4110000	+		14512	37123	10226	10245	15914;15915	15915					-0.1087636888353245
ETIFLLKGV	9	Unmodified	_ETIFLLKGV_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2657470703125	2	510.310418	1018.60628	-0.87491	-0.00044648	2.4298	0.00124	1.5549	0.00079348	510.81308457268267	81.343	0.2041	81.367	81.248	81.452	0.023903					6	4	2	0	0	0	0.024354	1	10062	10062		38.806	3.6054	1	22989	+		14513	36591	10227	10246	15916	15916					0.09772388142528143
ETIHAEDIFI	10	Unmodified	_ETIHAEDIFI_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	595.2596435546875	2	594.300778	1186.587	-1.9991	-0.001188	1.7653	0.0010491	-0.23375	-0.00013892	594.3017652304618	75.824	0.72744	75.824	75.622	76.35	0					53	18	4	0	0	0	0.03519	1	9384	9384		58.782	0	1	1452600	+	+	14514	19526	10228	10247	15917	15917					0.001173870609363803
ETIHAEDIFI	10	Unmodified	_ETIHAEDIFI_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	595.2590942382812	2	594.300778	1186.587	0.1846	0.00010971	-0.26354	-0.00015662	-0.07894	-4.6914E-05	594.3004408869075	75.828	0.84321	75.839	75.645	76.488	0.011642					55	21	4	0	0	0	0.03519	1	9300	9300		82.305	16.84	1	1397200	+	+	14515	19526	10228	10247	15918	15918					0.001173870609363803
ETIILSAMENT	11	Unmodified	_ETIILSAMENT_					0	0	0			REV__nc|ENSG00000211807|A0A087WT03|TRAV26-1	REV__nc|ENSG00000211807|A0A087WT03|TRAV26-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.5391540527344	3	407.872561	1220.59585	-0.16954	-6.9151E-05	3.8221	0.0015589	3.6526	0.0014898	407.8741262255161	30.514	0.46231	30.365	30.18	30.642	-0.14952					17	10	2	0	0	0	0.024738	1	1957	1957		19.627	1.0959	1	202660	+		14516	37111	10229	10248	15919	15919					-0.005620073648742618
ETIIQKIK	8	Unmodified	_ETIIQKIK_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7791442871094	2	486.808042	971.601532	-0.26333	-0.00012819	0.16944	8.2486E-05	-0.093892	-4.5707E-05	486.8080158050187	24.572	0.37309	24.357	24.177	24.55	-0.2151					15	8	2	0	0	0	0.027866	1	1115	1115		11.511	0	1	191260			14517	7882	10230	10249	15920	15920					0.11459503999753906
ETIKPEEP	8	Unmodified	_ETIKPEEP_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7723388671875	2	471.742565	941.470577	-0.30709	-0.00014487	1.0816	0.00051022	0.77449	0.00036536	471.74217084471616	40.195	0.2981	40.218	40.126	40.424	0.023006					11	7	2	0	0	0	0.027866	1	3487	3487		87.754	16.459	1	116150			14518	18114;2013	10231	10250	15921	15921					-0.002499314389524443
ETILAAKLI	9	Unmodified	_ETILAAKLI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.92822265625	2	486.310418	970.606283	-0.68801	-0.00033459	-0.046094	-2.2416E-05	-0.73411	-0.000357	486.31026573006284	44.778	0.80746	44.526	44.248	45.055	-0.25252					41	20	3	0	0	0	0.024263	1	4264	4264		42.396	0	1	1203700	+		14519	25017	10232	10251	15922	15922					0.11980388142512766
ETILGLNLL	9	Unmodified	_ETILGLNLL_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3002014160156	2	493.30005	984.585547	-0.39701	-0.00019585	0.41547	0.00020495	0.018456	9.1044E-06	493.3001399464545	92.98	1.2853	92.976	92.125	93.41	-0.0041962					54	30	3	0	0	0	0.31247	1	11771	11771		73.975	8.1716	1	1233600	+		14520	21418	10233	10252	15923	15923					0.09263797762855575
ETILKDRE	8	Unmodified	_ETILKDRE_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.75421142578125	2	502.274564	1002.53457	-0.5873	-0.00029499	2.4296	0.0012203	1.8423	0.00092536	502.2758187105354	26.096	1.2088	26.073	25.443	26.652	-0.023088					37	20	3	0	0	0	0.027866	1	1318	1318		35.618	3.6634	1	299570	+		14521	26756	10234	10253	15924	15924					0.033408487179940494
ETILLICYI	9	Unmodified	_ETILLICYI_					0	0	0			REV__ENST00000372902.3_1_X:100600658-100600718:-|nuORF	REV__ENST00000372902.3_1_X:100600658-100600718:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8052368164062	2	540.804111	1079.59367	-0.80283	-0.00043417	4.2318	0.0022886	3.4289	0.0018544	540.8062276067777	60.057	1.7867	59.857	59.393	61.179	-0.20016					100	34	5	0	0	0	0.64155	1	6834	6834		50.025	4.0726	1	6953200	+		14522	31222	10235	10254	15925	15925					0.057056086879583745
ETIRCPFR	8	Unmodified	_ETIRCPFR_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-2|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-2|ODF2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2537841796875	2	511.266019	1020.51748	0.39354	0.0002012	0.6842	0.00034981	1.0777	0.00055101	511.2651225393084	54.369	0.61935	54.467	54.077	54.696	0.098011					31	17	3	0	0	0	0.027866	1	5819	5819		44.117	13.613	1	490930	+		14523	36622	10236	10255	15926	15926					0.008046496311976625
ETIRLIVNN	9	Unmodified	_ETIRLIVNN_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3114624023438	2	536.31148	1070.60841	0.12215	6.5509E-05	0.13741	7.3692E-05	0.25955	0.0001392	536.31166725568	96.915	0.84087	96.924	96.575	97.415	0.0089111					45	18	4	0	0	0	0.85329	1	12325	12325		35.618	1.4457	1	475090	+		14524	36756	10237	10256	15927	15927					0.07592816880332975
ETIRLIVNN	9	Unmodified	_ETIRLIVNN_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.3110961914062	2	536.31148	1070.60841	0.59137	0.00031716	-0.25105	-0.00013464	0.34032	0.00018252	536.3113371043105	97.078	1.1595	96.954	96.572	97.732	-0.12368					69	25	5	0	0	0	0.6504	1	12022	12022		49.442	7.0454	1	563610	+		14525	36756	10237	10256	15928	15928					0.07592816880332975
ETIRLIVNN	9	Unmodified	_ETIRLIVNN_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	536.31148	1070.60841	-0.66715	-0.0003578	0.98845	0.00053012	0.3213	0.00017232	536.3120255330238	96.983	0.75471	96.983	96.615	97.37	0	0.019699	0.00085042	NaN	49.442	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520020	+		14526	36756	10237	10256							0.07592816880332975
ETISIWKH	8	Unmodified	_ETISIWKH_					0	0	0			REV__ENSG00000121966|ENST00000241393|CXCR4	REV__ENSG00000121966|ENST00000241393|CXCR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.30810546875	2	507.274367	1012.53418	-0.11651	-5.9103E-05	2.4922	0.0012642	2.3757	0.0012051	507.2751797910241	87.781	0.85832	87.643	87.289	88.148	-0.13734					23	20	2	0	0	0	0.027866	1	10660	10660		68.485	24.368	1	58835	+		14527	22622	10238	10257	15929	15929					0.028414737888056152
ETITAPIQF	9	Unmodified	_ETITAPIQF_					0	0	0			REV__nc|ENSG00000133083|O15075-3|DCLK1	REV__nc|ENSG00000133083|O15075-3|DCLK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2637023925781	2	510.274032	1018.53351	-0.26423	-0.00013483	2.9959	0.0015287	2.7316	0.0013939	510.2753779175925	80.879	0.86185	80.733	80.368	81.23	-0.146					30	20	2	0	0	0	0.024506	1	9720	9720		16.473	0	1	296360	+		14528	23346	10239	10258	15930	15930					0.024986343491036678
ETITFADEL	9	Unmodified	_ETITFADEL_					0	0	0			REV__SYNE1|p.A246T|1|0.17|ENSG00000131018|chr6:152505243-152505243|C/T|missense_variant	REV__SYNE1|p.A246T|1|0.17|ENSG00000131018|chr6:152505243-152505243|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2919921875	2	519.75313	1037.49171	-0.76792	-0.00039913	4.3335	0.0022524	3.5656	0.0018532	519.7536010460233	73.395	0.66433	73.395	72.952	73.617	0					37	17	4	0	0	0	0.024323	1	8890	8890		53.351	16.192	1	1157000	+		14529	37664	10240	10259	15931	15931					-0.02553966130108165
ETITILSTF	9	Unmodified	_ETITILSTF_					0	0	0			REV__nc|ENSG00000169894|Q02505-2|MUC3A	REV__nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7834167480469	2	512.78169	1023.54883	-0.54189	-0.00027787	-0.37824	-0.00019395	-0.92013	-0.00047183	512.7811399780379	53.112	0.71246	53.112	52.554	53.267	0					24	18	2	0	0	0	0.024541	1	5747	5747		31.955	20.444	1	193840	+		14530	26410	10241	10260	15932	15932					0.03799501146284001
ETIYDDCVAN	10	Unmodified	_ETIYDDCVAN_					0	0	0			REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2742919921875	2	571.737154	1141.45975	0.34339	0.00019633	-0.21741	-0.0001243	0.12598	7.2026E-05	571.7378908641697	56.627	0.19328	56.425	56.25	56.443	-0.20209					5	4	2	0	0	0	0.03519	1	6119	6119		39.253	13.679	1	113970	+		14531	26699	10242	10261	15933	15933					-0.10531701875538602
ETKAEEHNI	9	Unmodified	_ETKAEEHNI_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7852172851562	2	535.759278	1069.504	-1.4812	-0.00079359	-0.26783	-0.00014349	-1.7491	-0.00093709	536.2600252957467	55.548	0.29803	55.646	55.484	55.782	0.098015					11	7	2	0	0	0	0.024466	1	6089	6089		18.262	0	1	93756			14532	2137	10243	10262	15934	15934					-0.027969296670335098
ETKAEKYVNK	10	Unmodified	_ETKAEKYVNK_					0	0	0		ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF	ENSG00000124181|ENST00000685551|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2070007324219	3	403.88731	1208.6401	0.49015	0.00019797	0.0030005	1.2119E-06	0.49315	0.00019918	403.88682033537566	35.3	0.40219	35.3	35.129	35.531	0					21	10	3	0	0	0	0.03519	1	2701	2701		35.178	0	1	101700			14533	4018	10244	10263	15935	15935					0.04412764843596051
ETKILELL	8	Unmodified	_ETKILELL_					0	0	0			REV__ENSG00000136051|ENST00000332180|WASHC4	REV__ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2926940917969	2	479.794601	957.574648	0.29977	0.00014383	-1.2105	-0.0005808	-0.91074	-0.00043697	479.79344459126816	89.111	0.46165	89.127	88.88	89.342	0.015907					15	10	2	0	0	0	0.027866	1	11137	11137		19.36	0	1	146080	+		14534	23619	10245	10264	15936	15936					0.0941639538856407
ETKIQAVGLRY	11	Unmodified	_ETKIQAVGLRY_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	639.3634643554688	2	639.364244	1276.71394	0.20212	0.00012923	-1.61	-0.0010294	-1.4079	-0.00090017	639.3628708427515	110.2	0.60709	110.05	109.78	110.39	-0.14889					65	25	4	0	0	0	1.0344	1	13506	13506		29.17	3.596	1	961470	+		14535	22084	10246	10265	15937	15937					0.08664733005957714
ETKKDHPYTW	10	Unmodified	_ETKKDHPYTW_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;ENST00000538501.5_1_11:73950145-73964552:+|nuORF;nc|ENSG00000214517|Q9Y570-3|PPME1;ENST00000541340.5_1_11:73950145-73962300:+|nuORF	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.54730224609375	3	435.547177	1303.6197	-0.65192	-0.00028394	0.629	0.00027396	-0.022921	-9.983E-06	435.54736292907126	29.627	1.2233	29.382	29.099	30.322	-0.24524					78	28	4	0	0	0	1.0545	1	1832	1832		38.754	1.1537	1	1920100			14536	10557	10247	10266	15938	15938					-0.019964058162031506
ETKKGTSSQ	9	Unmodified	_ETKKGTSSQ_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7901306152344	2	483.248546	964.482539	-0.26901	-0.00013	-2.0787	-0.0010045	-2.3477	-0.0011345	483.2475426203287	47.739	0.81631	47.739	47.289	48.105	0					38	24	2	0	0	0	0.02435	1	4799	4799		26.693	1.2427	1	183230	+		14537	36860	10248	10267	15939	15939					-0.001123146957525023
ETKKHVLF	8	Unmodified	_ETKKHVLF_					0	0	0		ENST00000527590.5_1_11:119290120-119293859:-|nuORF;ENSG00000154096|ENST00000284240|THY1;ENST00000584021.1_1_11:119290746-119291154:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2921447753906	2	501.292559	1000.57057	-0.97205	-0.00048728	0.34167	0.00017127	-0.63038	-0.000316	501.2927162977392	45.644	1.4925	45.442	44.879	46.372	-0.20226					117	41	4	0	0	0	0.50239	1	4325	4325		85.359	8.5128	1	23005000			14538	6379	10249	10268	15940	15940					0.07030350685511166
ETKKLCPFGK	10	Unmodified	_ETKKLCPFGK_					0	0	0			REV__ENSG00000122254|ENST00000261374|HS3ST2	REV__ENSG00000122254|ENST00000261374|HS3ST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8192749023438	2	575.818084	1149.62162	2.0708	0.0011924	1.3363	0.00076944	3.4071	0.0019618	575.8183623384851	18.943	0.79246	18.71	18.383	19.176	-0.23345					40	15	4	0	0	0	0.91678	1	341	341		52.937	3.4952	1	107420	+		14539	22634	10250	10269	15941	15941					0.05278931668067344
ETKKLNGKA	9	Unmodified	_ETKKLNGKA_					0	0	0		nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	nc|ENSG00000139990|Q96JK2-2|DCAF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.77655029296875	2	494.792924	987.571294	-0.77879	-0.00038534	2.3011	0.0011386	1.5223	0.00075324	494.79330379348875	27.737	0.48802	27.569	27.359	27.847	-0.16816					28	11	4	0	0	0	0.023417	1	1585	1585		58.782	0.97068	1	377480			14540	5385	10251	10270	15942	15942					0.07701145334567627
ETKKLWTTI	9	Unmodified	_ETKKLWTTI_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.287841796875	2	560.324057	1118.63356	0.095245	5.3368E-05	-0.11878	-6.6555E-05	-0.023534	-1.3187E-05	560.3238404685324	50.612	0.85346	50.501	50.043	50.896	-0.11163					35	22	2	0	0	0	0.024487	1	5215	5215		17.365	0	1	614540	+		14541	20191	10252	10271	15943	15943					0.07898871682891695
ETKKRQISK	9	Unmodified	_ETKKRQISK_					0	0	0			REV__ENSG00000172086|ENST00000347055|KRCC1	REV__ENSG00000172086|ENST00000347055|KRCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8138427734375	2	559.33803	1116.66151	-0.6792	-0.0003799	3.6942	0.0020663	3.015	0.0016864	559.3399281282797	76.433	1.3534	76.204	75.459	76.813	-0.22843					66	34	3	0	0	0	0.024541	1	9421	9421		19.104	3.4617	1	656780	+		14542	26633	10253	10272	15944	15944					0.10784194662983282
ETKLKARQL	9	Unmodified	_ETKLKARQL_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;NAP1L1|p.A93Vfs*45|1|0.16|ENSG00000187109|chr12:76060181-76060208|AGATCGTGAACTTCCTCATAGAATTTGG/-|frameshift_variant	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7847900390625	2	543.835123	1085.65569	-0.99393	-0.00054053	-0.10859	-5.9054E-05	-1.1025	-0.00059959	543.8352236125062	51.285	0.5037	51.136	50.758	51.261	-0.14916					19	13	2	0	0	0	0.024477	1	5411	5411		44.117	13.799	1	233630			14543	9608	10254	10273	15945	15945					0.11629096151318663
ETKLKGLMP	9	Unmodified	_ETKLKGLMP_					0	0	0		ENSG00000154240|ENST00000535342|CEP112;nc|ENSG00000154240|Q8N8E3-2|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2760925292969	2	508.794078	1015.5736	-0.046144	-2.3478E-05	-0.68565	-0.00034886	-0.7318	-0.00037233	508.79290104397666	71.182	0.60284	71.193	70.976	71.579	0.010735					32	15	4	0	0	0	0.024294	1	8530	8530		21.96	0	1	409470			14544	6393	10255	10274	15946	15946					0.06643857748019855
ETKNIVLML	9	Oxidation (M)	_ETKNIVLM(Oxidation (M))L_		ETKNIVLM(1)L		ETKNIVLM(99)L	0	0	1		ENST00000374952.1_1_X:55250452-55250497:+|nuORF	ENST00000374952.1_1_X:55250452-55250497:+|nuORF	ENST00000374952.1_1_X:55250452-55250497:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.802734375	2	538.804642	1075.59473	-1.3629	-0.00073432	-2.0536	-0.0011065	-3.4165	-0.0018408	538.8033452203512	93.727	1.67	93.587	93.135	94.805	-0.13995					102	38	4	0	0	0	0.15029	1	11559	11559		99.375	10.732	1	2962700			14545	13142	10256	10275	15947	15947		488			0.05995823056855443
ETKPPRVPK	9	Unmodified	_ETKPPRVPK_					0	0	0		ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.27294921875	2	526.316566	1050.61858	0.10268	5.4041E-05	-0.11707	-6.1618E-05	-0.014397	-7.5773E-06	526.3162816621017	58.625	0.58856	58.438	58.24	58.829	-0.18705					34	15	3	0	0	0	0.024438	1	6668	6668		44.377	0	1	438280			14546	5973	10257	10276	15948	15948					0.09529424605557324
ETKREMKLG	9	Unmodified	_ETKREMKLG_					0	0	0		ENSG00000136011|ENST00000388887|STAB2;STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;STAB2|p.T1102Qfs*18|1|0.1|ENSG00000136011|chr12:103692818-103692818|A/-|frameshift_variant;STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.2779541015625	2	546.297516	1090.58048	-1.6247	-0.00088756	1.1832	0.00064639	-0.44146	-0.00024117	546.2977973534014	30.143	1.926	30.218	29.485	31.411	0.074314					79	46	3	0	0	0	0.024374	1	1961	1961		40.778	7.9657	1	186230			14547	4969	10258	10277	15949	15949					0.03881170628574182
ETKRLTPV	8	Unmodified	_ETKRLTPV_					0	0	0			REV__nc|ENSG00000196628|P15884-11|TCF4	REV__nc|ENSG00000196628|P15884-11|TCF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7616882324219	2	472.282192	942.549831	-0.10528	-4.9723E-05	-0.16713	-7.8935E-05	-0.27242	-0.00012866	472.282061603318	33.001	0.71562	33.001	32.606	33.321	0					40	18	3	0	0	0	0.027866	1	2276	2276		53.351	21.397	1	1083900	+		14548	37055	10259	10278	15950	15950					0.07625760305847962
ETKSRSVVY	9	Unmodified	_ETKSRSVVY_					0	0	0			REV__nc|ENSG00000229769|A0A0K0K1G8|TRBV10-2	REV__nc|ENSG00000229769|A0A0K0K1G8|TRBV10-2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7667846679688	2	534.787838	1067.56112	-0.69026	-0.00036914	1.5477	0.0008277	0.85746	0.00045856	534.7900656512554	37.357	0.31187	37.147	36.961	37.273	-0.2092					11	7	2	0	0	0	0.024405	1	2995	2995		35.618	0	1	56687	+		14549	37145	10260	10279	15951	15951					0.030045376093539744
ETKTKVKSP	9	Unmodified	_ETKTKVKSP_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7452392578125	2	509.300581	1016.58661	-0.68854	-0.00035067	1.3464	0.00068574	0.65789	0.00033506	509.3012537377824	38.865	0.39677	38.865	38.68	39.076	0					23	10	3	0	0	0	0.024209	1	3273	3273		56.721	21.103	1	479080	+		14550	20894	10261	10280	15952	15952					0.07898012131761334
ETKVKRKNL	9	Unmodified	_ETKVKRKNL_					0	0	0		nc|ENSG00000011347|O43581|SYT7;nc|ENSG00000011347|O43581-6|SYT7;nc|ENSG00000011347|O43581-2|SYT7;ENST00000539246.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-5|SYT7;ENST00000539468.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7;ENST00000540831.1_1_11:61292241-61300574:-|nuORF	nc|ENSG00000011347|O43581|SYT7	nc|ENSG00000011347|O43581|SYT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.264892578125	2	558.348397	1114.68224	-0.49244	-0.00027495	3.8089	0.0021267	3.3164	0.0018517	558.3504760388231	82.969	0.4277	82.995	82.788	83.215	0.026558					15	9	2	0	0	0	0.024541	1	10279	10279		17.365	0	1	56384			14551	894	10262	10281	15953	15953					0.12948785042658528
ETKWNFMQQQ	10	Unmodified	_ETKWNFMQQQ_					0	0	0		ENSG00000161850|ENST00000257974|KRT82;CON__Q9NSB4	ENSG00000161850|ENST00000257974|KRT82	ENSG00000161850|ENST00000257974|KRT82	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.20953369140625	3	447.208167	1338.60267	-0.33125	-0.00014814	2.7881	0.0012468	2.4568	0.0010987	447.2094506707595	38.918	1.0051	38.819	38.475	39.48	-0.098755					67	27	5	0	0	0	1.0997	1	3292	3292		32.751	1.1163	1	2641500		+	14552	572	10263	10282	15954	15954					-0.053086496936430194
ETLAQWKKD	9	Unmodified	_ETLAQWKKD_					0	0	0		nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7	nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.27001953125	2	559.795663	1117.57677	-0.5942	-0.00033263	3.5842	0.0020064	2.99	0.0016738	559.797108656821	62.399	0.56639	62.462	62.331	62.897	0.062767					20	13	2	0	0	0	0.023837	1	7215	7215		84.916	31.979	1	414570			14553	1026	10264	10283	15955	15955					0.022688241263722375
ETLDAPSL	8	Unmodified	_ETLDAPSL_					0	0	0			REV__ENSG00000037474|ENST00000264670|NSUN2	REV__ENSG00000037474|ENST00000264670|NSUN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.58245849609375	2	423.216183	844.417813	-1.2827	-0.00054287	2.594	0.0010978	1.3113	0.00055495	423.2170212727885	44.42	0.29507	44.275	44.099	44.394	-0.14471					13	8	2	0	0	0	0.027866	1	4187	4187		18.324	3.6603	1	153100	+		14554	20069	10265	10284	15956	15956					-0.010618895017728391
ETLDKATWF	9	Unmodified	_ETLDKATWF_					0	0	0			REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7985229492188	2	555.776939	1109.53933	0.3722	0.00020686	-0.99591	-0.0005535	-0.62371	-0.00034664	555.7762423479636	20.95	1.7549	20.754	20.187	21.942	-0.19577					68	35	3	0	0	0	0.024495	1	705	705		34.173	2.6427	1	168470	+		14555	25512	10266	10285	15957	15957					-0.011062671392664924
ETLDKATWF	9	Unmodified	_ETLDKATWF_					0	0	0			REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	555.776939	1109.53933	-1.1189	-0.00062186	0.41057	0.00022819	-0.70832	-0.00039367	555.776993340939	21.086	2.0057	20.873	20.177	22.183	-0.2128	0.074711	0.0010139	NaN	51.335	89	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151800	+		14556	25512	10266	10285							-0.011062671392664924
ETLELWCC	8	Unmodified	_ETLELWCC_					0	0	0		ENST00000372146.4_1_9:135565236-135565311:+|nuORF	ENST00000372146.4_1_9:135565236-135565311:+|nuORF	ENST00000372146.4_1_9:135565236-135565311:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.71697998046875	2	498.711896	995.409239	0.079964	3.9879E-05	1.0283	0.00051284	1.1083	0.00055272	498.7118549641045	36.988	1.1221	36.795	36.068	37.19	-0.193					53	28	3	0	0	0	0.027866	1	2927	2927		20.482	0	1	290000			14557	13028	10267	10286	15958	15958					-0.08864902734251245
ETLELWCC	8	Unmodified	_ETLELWCC_					0	0	0		ENST00000372146.4_1_9:135565236-135565311:+|nuORF	ENST00000372146.4_1_9:135565236-135565311:+|nuORF	ENST00000372146.4_1_9:135565236-135565311:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.7168273925781	2	498.711896	995.409239	-0.42164	-0.00021028	0.98515	0.00049131	0.56351	0.00028103	498.71181453146414	36.959	1.0664	36.739	36.047	37.114	-0.2195					53	26	3	0	0	0	0.027866	1	2891	2891		12.959	8.9739	1	264630			14558	13028	10267	10286	15959	15959					-0.08864902734251245
ETLEQKHRA	9	Unmodified	_ETLEQKHRA_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7693481445312	2	556.296362	1110.57817	-1.1777	-0.00065515	3.745	0.0020833	2.5673	0.0014282	556.2981173676234	37.858	0.54188	37.64	37.384	37.926	-0.21848					35	14	3	0	0	0	0.024397	1	3093	3093		31.53	9.5699	1	567790	+		14559	23437	10268	10287	15960	15960					0.027304582151373324
ETLFMPILS	9	Unmodified	_ETLFMPILS_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3147583007812	2	525.780636	1049.54672	-1.7513	-0.00092078	-4.378	-0.0023019	-6.1293	-0.0032226	526.2805682394397	75.258	0.92989	75.258	74.914	75.844	0					38	24	3	0	0	0	0.024427	1	9259	9259		42.396	0	1	214250	+		14560	22204	10269	10288	15961	15961					0.02392749136834027
ETLFNILMF	9	Unmodified	_ETLFNILMF_					0	0	0		ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2164916992188	2	564.293911	1126.57327	-0.055247	-3.1176E-05	2.8008	0.0015805	2.7455	0.0015493	564.2952262051119	34.573	0.31696	34.349	34.142	34.459	-0.22412					12	7	2	0	0	0	0.024523	1	2527	2527		37.159	11.709	1	183710			14561	12974	10270	10289	15962	15962					0.015044380281779013
ETLFNILMF	9	Unmodified	_ETLFNILMF_					0	0	0		ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.293911	1126.57327	-0.68614	-0.00038718	0.89939	0.00050752	0.21325	0.00012033	564.2943563755452	34.675	0.47024	34.671	34.375	34.845	-0.0045624	0.21161	-0.0017761	NaN	29.15	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67604			14562	12974	10270	10289							0.015044380281779013
ETLFNILMF	9	Unmodified	_ETLFNILMF_					0	0	0		ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.293911	1126.57327	-1.2351	-0.00069697	2.0773	0.0011722	0.84217	0.00047523	564.2951104002012	34.503	0.4315	34.553	34.479	34.91	0.050251	0.094324	-0.00044676	NaN	29.15	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80088			14563	12974	10270	10289							0.015044380281779013
ETLFNILMF	9	Unmodified	_ETLFNILMF_					0	0	0		ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	ENST00000370803.7_1_X:133560483-133560717:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.293911	1126.57327	-0.18164	-0.0001025	2.6735	0.0015086	2.4918	0.0014061	564.2952623071747	34.47	0.48175	34.263	34.043	34.525	-0.20696	-0.19602	0.0002261	NaN	29.15	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215470			14564	12974	10270	10289							0.015044380281779013
ETLGKKKSL	9	Unmodified	_ETLGKKKSL_					0	0	0		ENST00000381569.5_2_8:20112789-20161444:-|nuORF	ENST00000381569.5_2_8:20112789-20161444:-|nuORF	ENST00000381569.5_2_8:20112789-20161444:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2945251464844	2	502.310949	1002.60735	-0.3031	-0.00015225	-1.228	-0.00061682	-1.5311	-0.00076907	502.3106938199077	53.688	0.45705	53.784	53.481	53.938	0.095669					25	12	4	0	0	0	0.024427	1	5754	5754		26.693	1.1189	1	222170			14565	13346	10271	10290	15963	15963					0.10614602511407156
ETLGLRVLP	9	Unmodified	_ETLGLRVLP_					0	0	0			REV__ENSG00000215817|ENST00000651890|ZC3H11B	REV__ENSG00000215817|ENST00000651890|ZC3H11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7881774902344	2	499.305667	996.596781	0.67449	0.00033678	-0.35545	-0.00017748	0.31904	0.0001593	499.3053982594199	71.463	0.54623	71.174	70.844	71.39	-0.28858					20	13	2	0	0	0	0.024292	1	8639	8639		58.782	7.4465	1	404720	+		14566	28813	10272	10291	15964	15964					0.09834619856997051
ETLIRFLLN	9	Unmodified	_ETLIRFLLN_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.2704467773438	2	559.832049	1117.64954	-0.89717	-0.00050227	0.6116	0.00034239	-0.28557	-0.00015987	559.831989439289	63.029	0.3734	62.789	62.615	62.988	-0.23926					15	8	3	0	0	0	0.023417	1	7317	7317		58.782	12.83	1	209070	+		14567	23025	10273	10292	15965	15965					0.09542577919796713
ETLKAKLVP	9	Unmodified	_ETLKAKLVP_					0	0	0			REV__ENST00000485049.1_1_20:49411653-49449308:+|nuORF	REV__ENST00000485049.1_1_20:49411653-49449308:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8053283691406	2	499.815867	997.617182	-0.27021	-0.00013505	-0.67964	-0.00033969	-0.94985	-0.00047475	499.8154903359379	59.978	0.32156	59.778	59.616	59.938	-0.20016					13	8	2	0	0	0	0.024367	1	6856	6856		29.17	0	1	189400	+		14568	19203	10274	10293	15966	15966					0.11827790516792902
ETLKFMLIVKA	11	Unmodified	_ETLKFMLIVKA_					0	0	0		nc|ENSG00000100012|Q9UDX4-3|SEC14L3;nc|ENSG00000100012|Q9UDX4-2|SEC14L3;ENSG00000100012|ENST00000215812|SEC14L3	nc|ENSG00000100012|Q9UDX4-3|SEC14L3	nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	647.2749633789062	2	646.885967	1291.75738	0.26423	0.00017093	1.5818	0.0010232	1.846	0.0011942	646.8869620993667	46.057	0.52656	45.905	45.683	46.209	-0.15156					39	14	4	0	0	0	0.024747	1	4522	4522		24.519	8.8774	1	1007200			14569	2115	10275	10294	15967	15967					0.12317206458851615
ETLKKLLY	8	Unmodified	_ETLKKLLY_					0	0	0			REV__ENST00000531814.5_1_11:9685687-9746474:+|nuORF	REV__ENST00000531814.5_1_11:9685687-9746474:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7762756347656	2	504.310418	1006.60628	-0.57458	-0.00028976	0.04408	2.223E-05	-0.53049	-0.00026753	504.31021840988944	73.367	0.72061	73.177	72.675	73.396	-0.19026					25	17	2	0	0	0	0.027866	1	8632	8632		35.618	0	1	247450	+		14570	23394	10276	10295	15968	15968					0.10324388142521457
ETLKLIKQQL	10	Unmodified	_ETLKLIKQQL_					0	0	0			REV__nc|ENSG00000172765|O94876-2|TMCC1	REV__nc|ENSG00000172765|O94876-2|TMCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	607.3773803710938	2	607.379363	1212.74417	-0.30953	-0.000188	-2.7573	-0.0016747	-3.0669	-0.0018628	607.3775916140798	97.678	0.73053	97.676	97.367	98.097	-0.0020752					30	16	2	0	0	0	1.0508	1	12396	12396		39.253	3.6345	1	272430	+		14571	26706	10277	10296	15969	15969					0.14631091671117247
ETLKLISGW	9	Unmodified	_ETLKLISGW_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	OPSCC_40_ClassI_Rep-1	4	523.7986450195312	2	523.797675	1045.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.375	1	71.1	70.6	71.6	-0.27509								0	0	0	0.071952	1	8326	8326		99.375	35.168	1				14572	1742	10278	10297	15970	15970					0.059829136200733046
ETLKLISGW	9	Unmodified	_ETLKLISGW_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	OPSCC_40_ClassI_Rep-1	4	523.7978515625	2	523.797675	1045.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.452	1	71.177	70.677	71.677	-0.27509								0	0	0	0.025861	1	8336	8336		122.18	33.999	1				14573	1742	10278	10297	15971	15971					0.059829136200733046
ETLKLISGW	9	Unmodified	_ETLKLISGW_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MSMS	OPSCC_40_ClassI_Rep-1	4	523.7981567382812	2	523.797675	1045.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.535	1	71.26	70.76	71.76	-0.27509								0	0	0	0.035202	1	8348	8348		115.49	16.119	1				14574	1742	10278	10297	15972	15972					0.059829136200733046
ETLKLISGW	9	Unmodified	_ETLKLISGW_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.7988891601562	2	523.797675	1045.5808	0.12741	6.6739E-05	0.0093489	4.8969E-06	0.13676	7.1636E-05	523.7974086680299	71.4	1.0357	71.138	70.602	71.638	-0.26199					43	24	4	0	0	0	0.086035	3	8335	8335;8345;8357		115.49	21.488	1	6723000			14575	1742	10278	10297	15973;15974;15975	15973					0.059829136200733046
ETLKLISGW	9	Unmodified	_ETLKLISGW_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.79833984375	2	523.797675	1045.5808	0.78664	0.00041204	-0.72036	-0.00037732	0.066274	3.4714E-05	523.7970354374378	71.342	0.91779	71.136	70.659	71.577	-0.20614					40	21	4	0	0	0	0.014034	3	8313	8303;8313;8325		166.68	27.853	1	4920800			14576	1742	10278	10297	15976;15977;15978	15977					0.059829136200733046
ETLKRIQSH	9	Unmodified	_ETLKRIQSH_					0	0	0		ENSG00000168589|ENST00000305904|DYNLRB2	ENSG00000168589|ENST00000305904|DYNLRB2	ENSG00000168589|ENST00000305904|DYNLRB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7687377929688	2	556.314554	1110.61456	-1.2056	-0.00067068	3.1533	0.0017542	1.9477	0.0010835	556.3163766248181	38.573	0.23421	38.393	38.305	38.539	-0.17929					8	5	2	0	0	0	0.024477	1	3187	3187		27.882	9.5578	1	42711			14577	7841	10279	10298	15979	15979					0.0636733511184957
ETLKSSWKF	9	Unmodified	_ETLKSSWKF_					0	0	0			REV__ENSG00000196350|ENST00000601693|ZNF729	REV__ENSG00000196350|ENST00000601693|ZNF729	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.732177734375	2	563.300581	1124.58661	0.93398	0.00052611	-4.3622	-0.0024572	-3.4282	-0.0019311	563.2980791052867	51.289	0.50726	51.109	50.87	51.378	-0.18071					20	12	2	0	0	0	0.024477	1	5293	5293		44.117	27.644	1	177340	+		14578	28168	10280	10299	15980	15980					0.029300121317419325
ETLLALLMMS	10	Unmodified	_ETLLALLMMS_					0	0	0			REV__ENST00000373316.4_1_X:77372866-77373558:+|nuORF	REV__ENST00000373316.4_1_X:77372866-77373558:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.8460083007812	2	561.300878	1120.5872	0.51977	0.00029175	-1.7612	-0.00098854	-1.2414	-0.00069679	561.2994969053055	96.013	0.75232	96.015	95.481	96.233	0.0020752					26	17	2	0	0	0	0.03519	1	12084	12084		18.262	0	1	137900	+		14579	31251	10281	10300	15981	15981					0.031733474649399795
ETLLGRAQP	9	Unmodified	_ETLLGRAQP_					0	0	0			REV__ENSG00000164543|ENST00000319357|STK17A	REV__ENSG00000164543|ENST00000319357|STK17A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7667236328125	2	492.777274	983.539994	0.33396	0.00016457	-2.0445	-0.0010075	-1.7105	-0.00084291	492.776086735079	40.81	0.52411	40.81	40.347	40.871	0					18	14	2	0	0	0	0.023007	1	3598	3598		66.429	0	1	87285	+		14580	25771	10282	10301	15982	15982					0.04756572300470907
ETLLHRNL	8	Unmodified	_ETLLHRNL_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.3343811035156	2	498.285266	994.555979	1.5813	0.00078793	1.4677	0.00073134	3.049	0.0015193	498.28640645472535	73.989	0.51414	73.989	73.784	74.298	0					32	11	4	0	0	0	0.027866	1	9073	9073		31.955	0	1	232500	+		14581	25882	10283	10302	15983	15983					0.05848278537382612
ETLLHRNL	8	Unmodified	_ETLLHRNL_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.285266	994.555979	-0.38424	-0.00019146	4.3834	0.0021842	3.9991	0.0019927	498.28635340868817	73.963	0.4308	73.973	73.793	74.224	0.0096512	-0.0081466	0.0018146	NaN	45.952	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164280	+		14582	25882	10283	10302							0.05848278537382612
ETLLLQKF	8	Unmodified	_ETLLLQKF_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7557678222656	2	496.294768	990.574983	0.3608	0.00017906	1.9965	0.00099083	2.3573	0.0011699	496.2959760803515	67.401	0.59033	67.401	67.165	67.755	0					29	14	4	0	0	0	0.027866	1	8064	8064		38.806	0	1	285410	+		14583	27290	10284	10303	15984	15984					0.07931815108429419
ETLLLRAR	8	Unmodified	_ETLLLRAR_					0	0	0		ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3037109375	2	486.303458	970.592364	-0.11046	-5.3718E-05	-0.62688	-0.00030485	-0.73734	-0.00035857	486.30316316197457	47.719	1.2822	47.443	47.044	48.326	-0.27598					88	34	4	0	0	0	0.89627	1	4659	4659		51.335	3.4199	1	15986000			14584	16491	10285	10304	15985	15985					0.10589155434081476
ETLLQELPI	9	Unmodified	_ETLLQELPI_					0	0	0		ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7694091796875	2	528.30279	1054.59103	-0.19304	-0.00010198	2.9844	0.0015767	2.7914	0.0014747	528.8043134852853	52.972	0.46502	53.068	52.906	53.371	0.095669					18	12	3	0	0	0	0.023417	1	5681	5681		68.787	0	1	160230			14585	10405	10286	10305	15986	15986					0.06591476554672226
ETLLRLEI	8	Unmodified	_ETLLRLEI_					0	0	0		ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.798828125	2	493.797675	985.580796	0.50681	0.00025026	-1.3474	-0.00066534	-0.84058	-0.00041507	493.79700361881004	51.161	0.75517	51.161	50.845	51.6	0					71	20	5	0	0	0	0.50717	1	5426	5426		84.916	5.4645	1	16397000			14586	14236	10287	10306	15987	15987					0.08742913620085346
ETLLRLEI	8	Unmodified	_ETLLRLEI_					0	0	0		ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.8000183105469	2	493.797675	985.580796	-0.43011	-0.00021239	-0.55641	-0.00027476	-0.98652	-0.00048714	493.7973939581735	51.311	0.81356	51.162	50.826	51.64	-0.14916					75	22	5	0	0	0	0.50717	1	5433	5433		84.916	5.4645	1	15754000			14587	14236	10287	10306	15988	15988					0.08742913620085346
ETLLRLEI	8	Unmodified	_ETLLRLEI_					0	0	0		ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.8017578125	2	493.797675	985.580796	-0.96026	-0.00047417	0.015629	7.7175E-06	-0.94463	-0.00046645	493.79766170345863	51.079	0.85957	51.166	50.785	51.644	0.087006					82	23	5	0	0	0	0.5947	1	5345	5345		76.774	2.5191	1	14376000			14588	14236	10287	10306	15989	15989					0.08742913620085346
ETLNRQLVS	9	Unmodified	_ETLNRQLVS_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.813720703125	2	530.293288	1058.57202	0.17302	9.1751E-05	2.2828	0.0012105	2.4558	0.0013023	530.7955371585439	78.044	0.46405	77.801	77.617	78.081	-0.24232					13	10	2	0	0	0	0.024511	1	9307	9307		19.104	0	1	112190	+		14589	24351	10288	10307	15990	15990					0.04507939983614051
ETLNWKPV	8	Unmodified	_ETLNWKPV_					0	0	0		chr22:45396486-45399095|185|13.94|0.48|4.86|-|1|SMC1B,SMC1B|1	chr22:45396486-45399095|185|13.94|0.48|4.86|-|1|SMC1B,SMC1B|1	chr22:45396486-45399095|185|13.94|0.48|4.86|-|1|SMC1B,SMC1B|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.305908203125	2	493.768917	985.523281	1.2031	0.00059405	1.6657	0.00082248	2.8688	0.0014165	493.7682297637037	59.289	0.74648	59.289	58.965	59.711	0					60	19	4	0	0	0	0.027866	1	6764	6764		65.803	36.654	1	930580			14590	387	10289	10308	15991	15991					0.0299407141451411
ETLQQWVKLYR	11	Unmodified	_ETLQQWVKLYR_					0	0	0		ENST00000497613.2_1_8:145658938-145666334:-|nuORF;ENSG00000160949|ENST00000409379|TONSL	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.818603515625	3	488.605026	1462.79325	-0.076132	-3.7198E-05	-2.4143	-0.0011796	-2.4904	-0.0012168	488.93828418281777	103.54	1.2656	103.55	102.93	104.2	0.0054245					43	31	2	0	0	0	0.024809	1	13279	13279		22.562	2.5311	1	68545			14591	6851	10290	10309	15992	15992					0.08036379960094564
ETLRRMKR	8	Unmodified	_ETLRRMKR_					0	0	0		ENST00000552369.5_1_12:49233297-49239534:-|nuORF;ENST00000547135.5_1_12:49231823-49239549:-|nuORF	ENST00000552369.5_1_12:49233297-49239534:-|nuORF	ENST00000552369.5_1_12:49233297-49239534:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2906494140625	2	545.319117	1088.62368	0.17154	9.3543E-05	-2.1421	-0.0011681	-1.9706	-0.0010746	545.3179885556611	97.294	0.40048	97.294	97.103	97.503	-3.0518E-05					12	8	2	0	0	0	0.027866	1	12359	12359		37.159	0	1	45874			14592	16523	10291	10310	15993	15993					0.08291405196519008
ETLRSIQIN	9	Unmodified	_ETLRSIQIN_					0	0	0			REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant	REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2949829101562	2	537.301113	1072.58767	-0.64033	-0.00034405	4.3782	0.0023524	3.7379	0.0020084	537.303063447533	55.956	0.69256	55.8	55.554	56.247	-0.15602					35	18	3	0	0	0	0.0242	1	6243	6243		69.628	16.691	1	940180	+		14593	24771	10292	10311	15994	15994					0.054282265006804664
ETLRSLTI	8	Unmodified	_ETLRSLTI_					0	0	0			REV__VPS54|p.M642T|1|0.13|ENSG00000143952|chr2:63920572-63920572|A/G|missense_variant	REV__VPS54|p.M642T|1|0.13|ENSG00000143952|chr2:63920572-63920572|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7663879394531	2	466.7742	931.533846	1.4011	0.00065399	3.3389	0.0015585	4.74	0.0022125	466.77549121892457	87.123	0.63265	87.145	86.927	87.56	0.021263					19	14	2	0	0	0	0.027866	1	10868	10868		54.776	0	1	111050	+		14594	37780	10293	10312	15995	15995					0.06534054068947626
ETLRSLTI	8	Unmodified	_ETLRSLTI_					0	0	0			REV__VPS54|p.M642T|1|0.13|ENSG00000143952|chr2:63920572-63920572|A/G|missense_variant	REV__VPS54|p.M642T|1|0.13|ENSG00000143952|chr2:63920572-63920572|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.7742	931.533846	0.41824	0.00019522	4.2001	0.0019605	4.6183	0.0021557	466.77593201323896	87.182	0.46393	87.146	86.941	87.405	-0.035355	-0.02576	0.00031196	NaN	54.776	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110630	+		14595	37780	10293	10312							0.06534054068947626
ETLSFLQLGL	10	Unmodified	_ETLSFLQLGL_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.2884521484375	2	560.816064	1119.61758	0.75178	0.00042161	0.30638	0.00017182	1.0582	0.00059343	560.8160336726471	51.198	0.42747	51.018	50.834	51.261	-0.18071					27	10	3	0	0	0	0.03519	1	5225	5225		35.618	1.4457	1	514560			14596	10844	10294	10313	15996	15996					0.06255165445986677
ETLSHSRL	8	Unmodified	_ETLSHSRL_					0	0	0			REV__ENSG00000172000|ENST00000307635|ZNF556	REV__ENSG00000172000|ENST00000307635|ZNF556	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718505859375	2	471.753798	941.493044	0.76583	0.00036128	0.47931	0.00022612	1.2451	0.0005874	471.7549694826402	39.882	0.14291	39.882	39.808	39.951	0					5	3	2	0	0	0	0.027866	1	3459	3459		79.451	33.499	1	44758	+		14597	26626	10295	10314	15997	15997					0.019957127493285043
ETLSQLVD	8	Unmodified	_ETLSQLVD_					0	0	0			REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.7632751464844	2	452.73474	903.454927	0.48698	0.00022047	0.62336	0.00028222	1.1103	0.00050269	452.7349377962487	77.531	0.74895	77.531	77.252	78.001	0					23	17	2	0	0	0	0.027866	1	9549	9549		38.806	0	1	258950	+		14598	19699	10296	10315	15998	15998					-0.0006621795598675817
ETLTKDLTI	9	Unmodified	_ETLTKDLTI_					0	0	0			REV__SI|p.I1343L|1|0.18|ENSG00000090402|chr3:165013015-165013015|T/A|missense_variant	REV__SI|p.I1343L|1|0.18|ENSG00000090402|chr3:165013015-165013015|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7810668945312	2	517.292422	1032.57029	0.02022	1.046E-05	0.97862	0.00050623	0.99884	0.00051669	517.2928457412974	41.332	1.0604	41.208	40.87	41.93	-0.12317					72	29	3	0	0	0	0.024397	1	3809	3809		39.253	0	1	4379000	+		14599	37488	10297	10316	15999	15999					0.05530886174983607
ETLTMEAAGV	10	Unmodified	_ETLTMEAAGV_					0	0	0			REV__CON__H-INV:HIT000015463	REV__CON__H-INV:HIT000015463	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.80780029296875	2	511.247157	1020.47976	-0.92591	-0.00047337	-2.9985	-0.001533	-3.9244	-0.0020064	511.2453994345175	68.79	0.52894	68.529	68.26	68.789	-0.26166					16	12	2	0	0	0	0.03519	1	7944	7944		21.96	0	1	170830	+	+	14600	19531	10298	10317	16000	16000					-0.029659061449365254
ETLTMEAAGV	10	Unmodified	_ETLTMEAAGV_					0	0	0			REV__CON__H-INV:HIT000015463	REV__CON__H-INV:HIT000015463	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.247157	1020.47976	0.15325	7.835E-05	-3.7213	-0.0019025	-3.5681	-0.0018242	511.24493514832545	68.745	0.32123	68.514	68.316	68.637	-0.23048	-0.0073674	-0.00064593	NaN	35.618	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97640	+	+	14601	19531	10298	10317							-0.029659061449365254
ETLTSYNL	8	Unmodified	_ETLTSYNL_					0	0	0		ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.76470947265625	2	470.73474	939.454927	0.1217	5.729E-05	-2.9514	-0.0013893	-2.8297	-0.001332	470.73324987067167	35.904	0.77884	35.688	35.507	36.286	-0.21661					46	21	3	0	0	0	0.027866	1	2751	2751		30.504	5.0535	1	1033200			14602	8201	10299	10318	16001	16001					-0.017222179560008044
ETLVERAGPV	10	Unmodified	_ETLVERAGPV_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7982788085938	2	535.795663	1069.57677	-0.25573	-0.00013702	4.1602	0.002229	3.9045	0.002092	535.7977510474138	89.081	1.3287	89.081	88.725	90.054	0					73	31	4	0	0	0	0.66532	1	11238	11238		69.628	3.1983	1	2984600	+		14603	36945	10300	10319	16002	16002					0.04476824126390966
ETLVHLII	8	Unmodified	_ETLVHLII_					0	0	0		ENSG00000198774|ENST00000361228|RASSF9	ENSG00000198774|ENST00000361228|RASSF9	ENSG00000198774|ENST00000361228|RASSF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	469.2889099121094	2	469.289485	936.564418	-0.7154	-0.00033573	0.46546	0.00021843	-0.24994	-0.0001173	469.2895027309017	48.633	0.88276	48.533	48.147	49.029	-0.1008					59	23	4	0	0	0	0.71717	1	4849	4849		65.897	0	1	2762200			14604	10196	10301	10320	16003	16003					0.09359832453992567
ETLVPPLI	8	Unmodified	_ETLVPPLI_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.22625732421875	2	441.270761	880.52697	-1.0926	-0.00048213	-1.8915	-0.00083466	-2.9841	-0.0013168	441.26976500031316	30.115	0.73359	30.115	29.692	30.426	0					27	17	2	0	0	0	0.027866	1	1868	1868		25.45	4.9683	1	151810	+		14605	28819	10302	10321	16004	16004					0.08192741188372565
ETLVPPLI	8	Unmodified	_ETLVPPLI_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	441.270761	880.52697	-0.83947	-0.00037043	-1.9688	-0.00086878	-2.8083	-0.0012392	441.2696941907058	29.814	0.68547	29.892	29.489	30.174	0.078344	-0.13113	0.0001167	NaN	25.45	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153390	+		14606	28819	10302	10321							0.08192741188372565
ETLVVCQYK	9	Unmodified	_ETLVVCQYK_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.2642211914062	2	541.781167	1081.54778	-0.39383	-0.00021337	1.7306	0.00093763	1.3368	0.00072426	542.2826590464025	35.017	0.32541	34.801	34.548	34.874	-0.21555					9	7	2	0	0	0	0.024535	1	2606	2606		25.45	0	1	112290	+		14607	20054	10303	10322	16005	16005					0.010269635057284177
ETLWTHEP	8	Unmodified	_ETLWTHEP_					0	0	0			REV__nc|ENSG00000105499|Q9UP65-3|PLA2G4C	REV__nc|ENSG00000105499|Q9UP65-3|PLA2G4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8102722167969	2	506.740357	1011.46616	-0.289	-0.00014645	4.0166	0.0020354	3.7276	0.0018889	506.7419416009404	56.6	0.36613	56.698	56.581	56.947	0.097893					13	10	2	0	0	0	0.027866	1	6235	6235		57.811	20.652	1	100880	+		14608	36543	10304	10323	16006	16006					-0.039113958618713696
ETLYDVNIFM	10	Unmodified	_ETLYDVNIFM_					0	0	0			REV__ENSG00000183778|ENST00000684187|B3GALT5	REV__ENSG00000183778|ENST00000684187|B3GALT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.1659851074219	3	415.533768	1243.57948	0.11661	4.8454E-05	-1.1532	-0.00047921	-1.0366	-0.00043076	415.86738331263666	37.058	0.73523	36.865	36.455	37.19	-0.193					27	18	2	0	0	0	0.03519	1	2918	2918		41.427	12.85	1	105040	+		14609	27609	10305	10324	16007	16007					-0.03257088531017871
ETLYILSK	8	Unmodified	_ETLYILSK_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.2745056152344	2	483.778951	965.543348	0.14775	7.1477E-05	-3.5959	-0.0017396	-3.4482	-0.0016682	483.777393126895	34.835	0.79925	34.619	34.188	34.987	-0.21555					34	19	3	0	0	0	0.027866	1	2544	2544		27.882	12.24	1	586740			14610	7026	10306	10325	16008	16008					0.05919822354474036
ETLYILSK	8	Unmodified	_ETLYILSK_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.2737121582031	2	483.778951	965.543348	-0.36129	-0.00017478	-2.9182	-0.0014118	-3.2795	-0.0015865	483.77763698506294	34.83	0.88656	34.623	34.082	34.968	-0.20696					38	21	3	0	0	0	0.027866	1	2535	2535		35.618	0	1	614570			14611	7026	10306	10325	16009	16009					0.05919822354474036
ETMAMKLLT	9	Unmodified	_ETMAMKLLT_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.26904296875	2	519.272121	1036.52969	-0.49274	-0.00025587	-2.6212	-0.0013611	-3.1139	-0.001617	519.2706934490111	75.528	0.58444	75.284	74.997	75.581	-0.24455					21	15	2	0	0	0	0.023239	1	9193	9193		84.916	27.104	1	372680			14612	1991	10307	10326	16010	16010					0.012885052593674118
ETMEKQICY	9	Unmodified	_ETMEKQICY_					0	0	0		ENST00000358731.8_2_5:70754606-70757675:+|nuORF	ENST00000358731.8_2_5:70754606-70757675:+|nuORF	ENST00000358731.8_2_5:70754606-70757675:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.7545166015625	2	572.754292	1143.49403	-0.20445	-0.0001171	0.90045	0.00051573	0.69599	0.00039863	572.7547731031191	52.295	1.0213	52.111	51.852	52.874	-0.18405					56	25	4	0	0	0	0.18915	1	5436	5436		90.777	21.99	1	2789000			14613	12722	10308	10327	16011	16011					-0.0719757698830108
ETMFIVAIN	9	Unmodified	_ETMFIVAIN_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2412109375	2	519.270435	1036.52632	-0.098726	-5.1265E-05	2.907	0.0015095	2.8083	0.0014582	519.2717898160605	76.692	0.61349	76.705	76.286	76.9	0.013016					19	14	2	0	0	0	0.024294	1	9321	9321		37.159	0	1	203880	+		14614	20514	10309	10328	16012	16012					0.009515784770428581
ETMGSNISQ	9	Unmodified	_ETMGSNISQ_					0	0	0		ENSG00000230453|ENST00000684830|ANKRD18B;nc|ENSG00000230453|A2A2Z9|ANKRD18B	ENSG00000230453|ENST00000684830|ANKRD18B	ENSG00000230453|ENST00000684830|ANKRD18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.2745056152344	2	483.713482	965.41241	0.17344	8.3897E-05	-3.251	-0.0015725	-3.0775	-0.0014886	483.71186651987364	34.39	0.41516	34.166	33.883	34.299	-0.22412					18	10	2	0	0	0	0.024367	1	2544	2544		36.447	10.873	1	75926			14615	10689	10310	10329	16013	16013					-0.07167936355881466
ETMLLDLFFM	10	Unmodified	_ETMLLDLFFM_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.52972412109375	3	420.539866	1258.59777	0.83094	0.00034944	2.8226	0.001187	3.6536	0.0015365	420.54091439709856	18.463	0.49416	18.307	18.05	18.544	-0.15637					20	9	3	0	0	0	0.03519	1	295	295		41.427	9.3925	1	142200			14616	2241	10311	10330	16014	16014					-0.02118669880633206
ETMLRKPPTG	10	Unmodified	_ETMLRKPPTG_					0	0	0		ENSG00000079432|ENST00000681038|CIC;CIC|p.A652Pfs*76|1|0.32|ENSG00000079432|chr19:42290717-42290717|C/-|frameshift_variant	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.2666625976562	2	565.305341	1128.59613	-0.25823	-0.00014598	3.1063	0.001756	2.8481	0.00161	565.3065629536769	69.486	0.57758	69.264	68.937	69.514	-0.22245					24	13	3	0	0	0	0.03519	1	8086	8086		25.574	0	1	91909			14617	1664	10312	10331	16015	16015					0.03697457145631233
ETMLWQKQ	8	Unmodified	_ETMLWQKQ_					0	0	0			REV__ENSG00000197265|ENST00000355904|GTF2E2	REV__ENSG00000197265|ENST00000355904|GTF2E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7889404296875	2	532.265684	1062.51682	-0.33589	-0.00017878	0.10355	5.5114E-05	-0.23234	-0.00012367	532.265603335856	63.965	0.66416	63.737	63.44	64.104	-0.22773					40	16	3	0	0	0	0.027866	1	7289	7289		30.504	7.924	1	763930	+		14618	28284	10313	10332	16016	16016					-0.011941898085069624
ETMQQTIEDL	10	Unmodified	_ETMQQTIEDL_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.1878662109375	3	403.188549	1206.54382	0.50857	0.00020505	-1.9664	-0.00079281	-1.4578	-0.00058776	403.1877335838278	36.603	0.63497	36.398	36.127	36.762	-0.20518					49	15	4	0	0	0	0.811	1	2875	2875		59.931	8.403	1	2779000			14619	6602	10314	10333	16017	16017					-0.0511917077860744
ETMWISGRL	9	Unmodified	_ETMWISGRL_					0	0	0			REV__TP53|p.V203Gfs*44|1|0.68|ENSG00000141510|chr17:7674923-7674923|A/-|frameshift_variant	REV__TP53|p.V203Gfs*44|1|0.68|ENSG00000141510|chr17:7674923-7674923|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.77587890625	2	546.778959	1091.54336	-0.44263	-0.00024202	-3.3348	-0.0018234	-3.7775	-0.0020654	546.7776713516633	52.622	1.9552	52.475	52.132	54.088	-0.14723					88	52	3	0	0	0	0.20967	1	5643	5643		87.754	8.3033	1	4571500	+		14620	37721	10315	10334	16018	16018					0.0012549908285564015
ETNLRAVSAPI	11	Unmodified	_ETNLRAVSAPI_					0	0	0		ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	ENSG00000275793|ENST00000619918|RIMBP3	ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	585.3116455078125	2	585.827495	1169.64044	-1.1173	-0.00065454	0.48572	0.00028455	-0.63157	-0.00036999	585.8274608423728	50.511	0.75937	50.362	50.033	50.792	-0.14916					57	22	4	0	0	0	0.024774	1	5235	5235		54.722	8.7501	1	1459400			14621	9208	10316	10335	16019	16019					0.062401845634894926
ETNPTVPAEIS	11	Unmodified	_ETNPTVPAEIS_					0	0	0			REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.3103637695312	2	579.287868	1156.56118	-0.041222	-2.388E-05	4.4081	0.0025536	4.3669	0.0025297	579.2898520747572	104.36	0.57313	104.19	103.94	104.51	-0.16791					25	15	3	0	0	0	0.02475	1	12947	12947		28.081	0	1	66145	+		14622	36514	10317	10336	16020	16020					-0.010835071813289687
ETPELPAV	8	Unmodified	_ETPELPAV_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7583312988281	2	428.226551	854.438549	0.02647	1.1335E-05	-3.6346	-0.0015564	-3.6081	-0.0015451	428.22569105694663	41.101	0.11604	40.965	40.869	40.985	-0.13553					4	2	2	0	0	0	0.027866	1	3596	3596		37.028	0	1	26693			14623	5421	10318	10337	16021	16021					0.005507008779090938
ETPISIAHRL	10	Unmodified	_ETPISIAHRL_					0	0	0		ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8261108398438	2	568.824755	1135.63496	0.093131	5.2975E-05	3.4099	0.0019396	3.503	0.0019926	568.8265667246868	74.797	1.2606	74.538	74.028	75.289	-0.25887					86	30	4	0	0	0	0.80817	1	9115	9115		60.118	0	1	2711700			14624	4031	10319	10338	16022	16022					0.07256505771670163
ETPKKRKF	8	Unmodified	_ETPKKRKF_					0	0	0			REV__ENSG00000238210|ENST00000427686|ETDA	REV__ENSG00000238210|ENST00000427686|ETDA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7836303710938	2	517.311284	1032.60801	-0.32791	-0.00016963	0.26348	0.0001363	-0.064431	-3.3331E-05	517.3111081514728	42.253	0.83366	42.021	41.733	42.567	-0.23186					39	22	3	0	0	0	0.027866	1	3775	3775		26.796	3.7536	1	1985300	+		14625	28856	10320	10339	16023	16023					0.09301441951151901
ETPKRAGAE	9	Unmodified	_ETPKRAGAE_					0	0	0		ENSG00000163704|ENST00000412055|PRRT3;nc|ENSG00000163704|Q5FWE3-3|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7314453125	2	479.751256	957.487959	-0.11499	-5.5167E-05	-2.8371	-0.0013611	-2.9521	-0.0014163	479.75052574425956	31.749	0.15939	31.761	31.663	31.823	0.011797					5	3	2	0	0	0	0.023635	1	2115	2115		66.429	20.477	1	21943			14626	7134	10321	10340	16024	16024					0.007514088867196733
ETPLEVLPETP	11	Unmodified	_ETPLEVLPETP_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	408.88507080078125	3	408.883455	1223.62853	0.019794	8.0934E-06	3.9964	0.0016341	4.0162	0.0016422	408.88502127753674	23.269	0.68689	23.089	22.79	23.477	-0.17989					44	15	4	0	0	0	1.0483	1	883	883		17.167	0	1	1128200	+		14627	36895	10322	10341	16025	16025					0.025665230296226582
ETPLLHSLT	9	Unmodified	_ETPLLHSLT_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.2525939941406	2	505.779482	1009.54441	-0.40193	-0.00020329	-0.0052541	-2.6574E-06	-0.40719	-0.00020595	505.77943899875726	61.655	0.97813	61.655	60.996	61.974	0					60	25	4	0	0	0	0.023817	1	7106	7106		60.972	0	1	11813000			14628	5922	10323	10342	16026	16026					0.04002036723386482
ETPLYLGR	8	Unmodified	_ETPLYLGR_					0	0	0			REV__ENST00000588933.5_1_19:9544893-9545835:-|nuORF	REV__ENST00000588933.5_1_19:9544893-9545835:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.7806701660156	2	474.761092	947.507631	1.8168	0.00086257	0.6092	0.00028923	2.4261	0.0011518	474.7613170230485	23.888	0.22032	23.707	23.539	23.759	-0.18089					7	4	2	0	0	0	0.027866	1	955	955		21.96	0	1	39191	+		14629	35646	10324	10343	16027	16027					0.03177784897491165
ETPLYPPKL	9	Unmodified	_ETPLYPPKL_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.295654296875	2	529.30005	1056.58555	0.0093011	4.9231E-06	-4.4033	-0.0023307	-4.394	-0.0023257	529.2974144850223	106.51	0.8959	106.51	106.1	106.99	0.0018387					60	31	4	0	0	0	0.83071	1	13620	13620		37.159	2.9866	1	974930			14630	1021	10325	10344	16028	16028					0.059517977628502194
ETPLYPPKL	9	Unmodified	_ETPLYPPKL_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	529.30005	1056.58555	-0.1923	-0.00010178	-4.149	-0.0021961	-4.3413	-0.0022979	529.2973186141925	106.81	0.56963	106.69	106.47	107.04	-0.12381	0.1091	0.00026284	NaN	37.159	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174870			14631	1021	10325	10344							0.059517977628502194
ETPLYPPKL	9	Unmodified	_ETPLYPPKL_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.30005	1056.58555	-1.5584	-0.00082485	-2.0211	-0.0010698	-3.5794	-0.0018946	529.2991627525961	106.86	0.87765	106.72	106.45	107.33	-0.1346	0.14515	0.0025155	NaN	37.159	47	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103210			14632	1021	10325	10344							0.059517977628502194
ETPLYPPKL	9	Unmodified	_ETPLYPPKL_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.30005	1056.58555	0.59513	0.000315	-4.2839	-0.0022674	-3.6887	-0.0019524	529.29807012135	106.97	0.76076	106.81	106.54	107.3	-0.15771	0.2363	0.00012012	NaN	37.159	43	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70620			14633	1021	10325	10344							0.059517977628502194
ETPPGTIAH	9	Unmodified	_ETPPGTIAH_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MSMS	OPSCC_40_ClassI_Rep-3	6	461.7339172363281	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.81	1	103.64	103.14	104.14	-0.16791								0	0	0	0.63881	1	12899	12899		33.516	5.6333	1		+		14634	27995	10326	10345	16029	16029					-0.008273785162828062
ETPSKLELL	9	Unmodified	_ETPSKLELL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2825317382812	2	515.294965	1028.57538	-0.062721	-3.232E-05	-2.6842	-0.0013831	-2.7469	-0.0014155	515.2934786905954	65.922	0.22818	65.649	65.568	65.796	-0.27282					8	5	2	0	0	0	0.024021	1	7787	7787		58.782	8.7574	1	245200	+		14635	23585	10327	10346	16030	16030					0.06223190037621862
ETPSKLELL	9	Unmodified	_ETPSKLELL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.294965	1028.57538	-0.27687	-0.00014267	-0.39691	-0.00020453	-0.67378	-0.0003472	515.2949899425195	65.836	0.37611	65.595	65.372	65.748	-0.24145	-0.037607	0.0013791	NaN	64.207	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193730	+		14636	23585	10327	10346							0.06223190037621862
ETPSKLELL	9	Unmodified	_ETPSKLELL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.294965	1028.57538	-0.91309	-0.00047051	2.9648	0.0015277	2.0517	0.0010572	515.2952705613011	65.812	0.45451	65.599	65.379	65.834	-0.21328	-0.033233	0.0048436	NaN	64.207	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231130	+		14637	23585	10327	10346							0.06223190037621862
ETPSKLELL	9	Unmodified	_ETPSKLELL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.294965	1028.57538	-0.43346	-0.00022336	-0.58649	-0.00030222	-1.02	-0.00052558	515.2951909297432	65.815	0.61449	65.564	65.27	65.885	-0.25112	-0.0682	0.0011837	NaN	64.207	21	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163160	+		14638	23585	10327	10346							0.06223190037621862
ETPSLQKI	8	Unmodified	_ETPSLQKI_					0	0	0		AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|10|3|sense;ENST00000588097.5_1_17:42381086-42381365:-|nuORF	AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|10|3|sense	AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|10|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2561950683594	2	458.260925	914.507297	-0.42562	-0.00019504	0.85197	0.00039043	0.42636	0.00019538	458.26127795356075	29.358	0.34721	29.361	29.204	29.551	0.0031357					14	8	2	0	0	0	0.027866	1	1777	1777		53.351	0	1	80161			14639	73	10328	10347	16031	16031					0.04662365177614447
ETPTSFSI	8	Unmodified	_ETPTSFSI_					0	0	0		ENST00000391835.1_1_19:50380575-50380692:-|nuORF	ENST00000391835.1_1_19:50380575-50380692:-|nuORF	ENST00000391835.1_1_19:50380575-50380692:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2553405761719	2	441.216183	880.417813	-0.34529	-0.00015235	2.4598	0.0010853	2.1145	0.00093296	441.21695849231503	37.669	0.92972	37.701	37.339	38.269	0.032269					57	25	4	0	0	0	0.027866	1	3086	3086		47.916	14.4	1	1119900			14640	13397	10329	10348	16032	16032					-0.027178895017527793
ETQGYLFPS	9	Unmodified	_ETQGYLFPS_					0	0	0		ENSG00000149489|ENST00000278833|ROM1;ENST00000534093.5_3_11:62379321-62382308:+|nuORF	ENSG00000149489|ENST00000278833|ROM1	ENSG00000149489|ENST00000278833|ROM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7935180664062	2	521.248015	1040.48148	-1.0889	-0.0005676	-2.693	-0.0014037	-3.7819	-0.0019713	521.24620090911	44.881	0.59128	44.881	44.622	45.214	0					24	16	2	0	0	0	0.024447	1	4347	4347		40.778	9.2484	1	335730			14641	6096	10330	10349	16033	16033					-0.03714529064677663
ETQKFEAW	8	Unmodified	_ETQKFEAW_					0	0	0		nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.23193359375	2	519.748182	1037.48181	-0.70805	-0.00036801	2.0362	0.0010583	1.3282	0.0006903	519.7490844339679	45.832	0.32636	45.63	45.492	45.819	-0.20226					13	8	2	0	0	0	0.027866	1	4349	4349		33.516	0	1	322770			14642	18601	10331	10350	16034	16034					-0.03543109344809636
ETQLQLSAR	9	Unmodified	_ETQLQLSAR_					0	0	0		ENST00000460804.5_1_1:21048287-21050865:-|nuORF;nc|ENSG00000189410|Q6ZV89-2|SH2D5;ENSG00000189410|ENST00000444387|SH2D5	ENST00000460804.5_1_1:21048287-21050865:-|nuORF	ENST00000460804.5_1_1:21048287-21050865:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.263916015625	2	523.285463	1044.55637	0.068962	3.6087E-05	1.9009	0.00099469	1.9698	0.0010308	523.2855923065505	54.617	0.81314	54.386	53.935	54.748	-0.23087					36	23	2	0	0	0	0.023061	1	5779	5779		60.118	5.3419	1	295460			14643	9810	10332	10351	16035	16035					0.03587653466570373
ETQLRKIN	8	Unmodified	_ETQLRKIN_					0	0	0		ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.27838134765625	2	501.290548	1000.56654	-0.1779	-8.918E-05	-2.1336	-0.0010695	-2.3115	-0.0011587	501.789056751792	79.677	0.58731	79.527	79.278	79.866	-0.15051					17	13	2	0	0	0	0.027866	1	9544	9544		44.117	29.252	1	116110			14644	6956	10333	10352	16036	16036					0.06628261191804086
ETQNPALPCV	10	Unmodified	_ETQNPALPCV_					0	0	0		nc|ENSG00000116774|Q9NRN5-3|OLFML3;ENST00000491700.1_1_1:114522138-114523244:+|nuORF;nc|ENSG00000116774|Q9NRN5-2|OLFML3;ENSG00000116774|ENST00000320334|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7816162109375	2	536.260599	1070.50665	-0.16697	-8.954E-05	-0.77285	-0.00041445	-0.93982	-0.00050399	536.7585940960024	95.491	0.85695	95.494	95.045	95.901	0.0033798					36	19	3	0	0	0	0.03519	1	12079	12079		40.778	15.204	1	130400			14645	18196	10334	10353	16037	16037					-0.025787975337379976
ETQPPKKDL	9	Unmodified	_ETQPPKKDL_					0	0	0		ENST00000475688.1_1_3:50378843-50379883:-|nuORF;nc|ENSG00000004838|O75800-2|ZMYND10;ENSG00000004838|ENST00000231749|ZMYND10	ENST00000475688.1_1_3:50378843-50379883:-|nuORF	ENST00000475688.1_1_3:50378843-50379883:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2927856445312	2	528.290214	1054.56587	-0.41626	-0.00021991	-0.145	-7.6604E-05	-0.56127	-0.00029651	528.2901894371032	54.86	1.3726	54.71	54.375	55.747	-0.15036					75	32	3	0	0	0	0.51687	1	6001	6001		58.23	7.0372	1	10567000			14646	748	10335	10354	16038	16038					0.040774217520947786
ETQPPMALK	9	Unmodified	_ETQPPMALK_					0	0	0		ENST00000396021.2_1_X:68003520-68004069:+|nuORF	ENST00000396021.2_1_X:68003520-68004069:+|nuORF	ENST00000396021.2_1_X:68003520-68004069:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7911682128906	2	507.76806	1013.52157	0.25196	0.00012794	-2.8156	-0.0014296	-2.5636	-0.0013017	507.7664920732691	71.655	1.1879	71.655	71.145	72.333	0					67	30	3	0	0	0	0.024397	1	8740	8740		56.721	5.3856	1	617930			14647	13540	10336	10355	16039	16039					0.015346943342592567
ETQRLLLL	8	Unmodified	_ETQRLLLL_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3;ENST00000558165.3_1_15:76551329-76551434:-|nuORF	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2633056640625	2	493.305667	984.596781	0.92468	0.00045615	-0.86377	-0.0004261	0.060917	3.0051E-05	493.305162852768	70.488	0.7455	70.488	70.281	71.026	0					27	17	2	0	0	0	0.027866	1	8589	8589		65.803	0	1	363900			14648	1992	10337	10356	16040	16040					0.10386619857001733
ETQVVVKGR	9	Unmodified	_ETQVVVKGR_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7682189941406	2	508.298373	1014.58219	-0.39755	-0.00020207	-1.2842	-0.00065274	-1.6817	-0.00085481	508.29674405196266	61.059	0.71216	61.059	60.582	61.295	0					23	18	2	0	0	0	0.023417	1	7004	7004		32.812	1.2826	1	299590	+		14649	28421	10338	10357	16041	16041					0.07548547708859132
ETQYQDLSVTL	11	Unmodified	_ETQYQDLSVTL_					0	0	0			REV__nc|ENSG00000068831|Q7LDG7-2|RASGRP2	REV__nc|ENSG00000068831|Q7LDG7-2|RASGRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.25860595703125	3	432.882114	1295.62451	-0.92748	-0.00040149	-2.1407	-0.00092668	-3.0682	-0.0013282	433.21576124773287	35.51	0.39535	35.488	35.233	35.629	-0.021763					14	9	2	0	0	0	0.024801	1	2739	2739		17.833	0	1	117780	+		14650	36467	10339	10358	16042	16042					-0.011475664641011463
ETRAEGYF	8	Unmodified	_ETRAEGYF_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.21502685546875	2	486.724707	971.43486	0.46413	0.0002259	-1.4228	-0.00069251	-0.95866	-0.0004666	486.7237545419338	97.405	0.93187	97.405	96.926	97.857	-3.0518E-05					40	20	3	0	0	0	0.027866	1	12374	12374		37.159	0	1	258850			14651	5364	10340	10359	16043	16043					-0.05199968895942675
ETRFYQRRKSF	11	Unmodified	_ETRFYQRRKSF_					0	0	0			REV__ENST00000272444.7_1_2:73989510-73989609:-|nuORF	REV__ENST00000272444.7_1_2:73989510-73989609:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8087158203125	3	506.603908	1516.78989	0.70159	0.00035543	-1.397	-0.00070771	-0.69538	-0.00035228	506.60320972074936	18.643	0.44568	18.486	18.346	18.792	-0.15637					13	8	2	0	0	0	0.024865	1	356	356		2.688	0	1	75508	+		14652	29813	10341	10360	16044	16044					0.05217129906054652
ETRKKEAP	8	Unmodified	_ETRKKEAP_					0	0	0		nc|ENSG00000084710|Q9Y2G0-2|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B;ENSG00000084710|ENST00000403714|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2926940917969	2	479.769448	957.524344	0.4874	0.00023384	4.3371	0.0020808	4.8245	0.0023147	479.7711734575728	88.579	0.68596	88.595	88.364	89.05	0.016357					39	15	3	0	0	0	0.027866	1	11137	11137		27.882	0	1	510290			14653	1776	10342	10361	16045	16045					0.043882857834205424
ETRLVPEL	8	Unmodified	_ETRLVPEL_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2905578613281	2	478.7742	955.533846	0.72147	0.00034542	-1.0653	-0.00051006	-0.34387	-0.00016464	478.77359768040884	46.686	0.98475	46.686	46.126	47.111	0					45	26	3	0	0	0	0.027866	1	4697	4697		42.396	0	1	1888500	+		14654	24946	10343	10362	16046	16046					0.054300540689382615
ETRPVQSSKKL	11	Unmodified	_ETRPVQSSKKL_					0	0	0			REV__PDLIM7|p.G273Afs*84|1|0.3|ENSG00000196923|chr5:177489444-177489444|C/-|frameshift_variant	REV__PDLIM7|p.G273Afs*84|1|0.3|ENSG00000196923|chr5:177489444-177489444|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.9134521484375	3	424.91386	1271.71975	-0.60793	-0.00025832	-2.6012	-0.0011053	-3.2091	-0.0013636	424.9127001724938	39.308	1.0729	39.331	38.768	39.84	0.023727					98	29	5	0	0	0	0.99648	2	3324	3299;3324		37.6	3.4274	1	12649000	+		14655	28239	10344	10363	16047;16048	16048					0.09475831517602273
ETRRILLQ	8	Unmodified	_ETRRILLQ_					0	0	0			REV__ENSG00000180488|ENST00000370791|MIGA1	REV__ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.281982421875	2	514.81419	1027.61383	-0.42985	-0.00022129	2.2777	0.0011726	1.8478	0.00095128	514.8165078545345	65.491	0.57097	65.528	65.288	65.859	0.037384					28	15	3	0	0	0	0.027866	1	7697	7697		38.806	0	1	311900	+		14656	27346	10345	10364	16049	16049					0.10112540462819197
ETRRNVTI	8	Unmodified	_ETRRNVTI_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.78253173828125	2	494.780348	987.546142	-0.088866	-4.3969E-05	3.0095	0.001489	2.9206	0.0014451	494.78162046990974	66.228	0.89734	65.946	65.354	66.251	-0.28148					70	23	5	0	0	0	1.0574	1	7880	7880		25.45	0	1	10437000			14657	8451	10346	10365	16050	16050					0.051870905319901794
ETRRPASH	8	Unmodified	_ETRRPASH_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4;nc|ENSG00000168418|Q8TDN1-2|KCNG4;KCNG4|p.R199H|1|0.3|ENSG00000168418|chr16:84236890-84236890|C/T|missense_variant	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.3159484863281	2	477.249215	952.483876	0.022138	1.0565E-05	-2.7505	-0.0013127	-2.7284	-0.0013021	477.24758397081416	66.056	0.60562	66.086	65.661	66.267	0.030106					24	15	3	0	0	0	0.027866	1	7734	7734		23.042	3.6825	1	303630			14658	7822	10347	10366	16051	16051					0.005733641836513925
ETRSFFLI	8	Unmodified	_ETRSFFLI_					0	0	0			REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8106689453125	2	506.776742	1011.53893	-0.16718	-8.4724E-05	-0.24717	-0.00012526	-0.41435	-0.00020998	507.27687159324887	54.665	0.33911	54.514	54.302	54.641	-0.15036					14	9	2	0	0	0	0.027866	1	5977	5977		50.025	5.9077	1	163560	+		14659	30700	10348	10367	16052	16052					0.03362357931564475
ETRVKKASL	9	Unmodified	_ETRVKKASL_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2506103515625	2	516.314023	1030.61349	0.21589	0.00011147	-0.56208	-0.00029021	-0.3462	-0.00017875	516.3135122179214	47.181	0.54253	46.911	46.695	47.238	-0.26939					17	14	2	0	0	0	0.024541	1	4553	4553		15.642	0	1	114230	+		14660	27926	10349	10368	16053	16053					0.09941120742928433
ETRVKQRL	8	Unmodified	_ETRVKQRL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3114624023438	2	515.311815	1028.60908	1.1229	0.00057866	-2.0475	-0.0010551	-0.92454	-0.00047643	515.3108501398033	20.119	1.0239	19.919	19.653	20.676	-0.2001					53	20	5	0	0	0	0.59392	1	507	507		76.847	0.072494	1	7938700			14661	2053	10350	10369	16054	16054					0.09591656320048969
ETRWSLLS	8	Unmodified	_ETRWSLLS_					0	0	0			REV__ENST00000527204.5_2_11:62361318-62361384:-|nuORF	REV__ENST00000527204.5_2_11:62361318-62361384:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.791748046875	2	496.263999	990.513445	-0.22831	-0.0001133	3.4118	0.0016931	3.1835	0.0015798	496.2657505536865	35.049	0.68305	35.049	34.552	35.235	0					29	17	2	0	0	0	0.027866	1	2628	2628		68.787	2.3575	1	6421000	+		14662	34470	10351	10370	16055	16055					0.017808834091624703
ETRWSLLS	8	Unmodified	_ETRWSLLS_					0	0	0			REV__ENST00000527204.5_2_11:62361318-62361384:-|nuORF	REV__ENST00000527204.5_2_11:62361318-62361384:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.263999	990.513445	-1.0289	-0.00051062	4.1362	0.0020527	3.1073	0.001542	496.2660668254029	35.236	1.0389	35.215	35.049	36.087	-0.021763	0.08263	0.00028331	NaN	68.787	51	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6338400	+		14663	34470	10351	10370							0.017808834091624703
ETSFPRGQHY	10	Unmodified	_ETSFPRGQHY_					0	0	0			REV__nc|ENSG00000116147|Q92752-2|TNR	REV__nc|ENSG00000116147|Q92752-2|TNR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	611.7395629882812	2	611.285994	1220.55744	-0.16519	-0.00010098	-3.3121	-0.0020246	-3.4773	-0.0021256	611.2837642742676	63.215	0.60729	62.957	62.706	63.313	-0.25824					36	14	4	0	0	0	0.03519	1	7086	7086		27.882	0	1	774590	+		14664	22261	10352	10371	16056	16056					-0.04402132164500472
ETSGARCSSP	10	Unmodified	_ETSGARCSSP_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3;nc|ENSG00000184347|O75094-2|SLIT3;ENST00000519486.5_1_5:168179958-168216668:-|nuORF;ENST00000518140.5_1_5:168199753-168727722:-|nuORF;SLIT3|p.P646Lfs*13|1|0.27|ENSG00000184347|chr5:168752991-168752991|G/-|frameshift_variant	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7168884277344	2	497.716556	993.418558	1.1373	0.00056605	-0.5892	-0.00029325	0.5481	0.0002728	497.7161923016036	36.74	1.5221	36.53	35.832	37.354	-0.2092					104	38	5	0	0	0	1.0122	1	2896	2896		44.377	1.981	1	2744400			14665	9328	10353	10372	16057	16057					-0.07841418124360189
ETSGETQTEI	10	Unmodified	_ETSGETQTEI_					0	0	0			REV__nc|ENSG00000123240|Q96CV9-3|OPTN	REV__nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.780029296875	2	547.746033	1093.47751	-1.1366	-0.00062257	1.5044	0.00082405	0.36784	0.00020148	547.7467593141531	32.677	3.133	32.689	30.871	34.004	0.011799					133	80	2	0	0	0	0.03519	1	2044	2044		34.173	2.2177	1	1412600	+		14666	22686	10354	10373	16058	16058					-0.0654866334905364
ETSHELWK	8	Unmodified	_ETSHELWK_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2288818359375	2	515.253631	1028.49271	-0.24981	-0.00012872	1.0325	0.00053201	0.7827	0.00040329	515.2540775917063	61.933	0.30747	61.719	61.584	61.892	-0.21375					14	7	2	0	0	0	0.027866	1	6959	6959		23.042	0	1	753250	+		14667	20282	10355	10374	16059	16059					-0.020397069705268223
ETSIIMPPVFT	11	Unmodified	_ETSIIMPPVFT_					0	0	0		ENSG00000111300|ENST00000261745|NAA25	ENSG00000111300|ENST00000261745|NAA25	ENSG00000111300|ENST00000261745|NAA25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.8909606933594	3	412.21778	1233.63151	-1.1992	-0.00049434	-3.2503	-0.0013398	-4.4495	-0.0018342	412.2161239260009	21.276	0.2949	21.063	20.921	21.216	-0.2128					7	5	2	0	0	0	0.024759	1	617	617		12.957	2.3707	1	8105.8			14668	3103	10356	10375	16060	16060					0.024040748827701464
ETSKIETY	8	Unmodified	_ETSKIETY_					0	0	0		ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2978515625	2	485.740022	969.465492	1.9602	0.00095213	-0.23119	-0.0001123	1.729	0.00083983	485.7397228147499	24.823	0.35009	24.649	24.468	24.818	-0.17434					11	7	2	0	0	0	0.027866	1	1098	1098		44.117	8.4985	1	31644			14669	8728	10357	10376	16061	16061					-0.02046235301577326
ETSKIETY	8	Unmodified	_ETSKIETY_					0	0	0		ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.740022	969.465492	-0.37242	-0.0001809	0.92041	0.00044708	0.54799	0.00026618	485.74077181916095	24.943	0.3922	24.716	24.494	24.887	-0.22683	0.033424	0.00040265	NaN	44.117	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45685			14670	8728	10357	10376							-0.02046235301577326
ETSKMRVLR	9	Unmodified	_ETSKMRVLR_					0	0	0		ENST00000481096.6_1_X:51805328-51806235:-|nuORF;ENST00000490581.6_1_X:51805127-51807590:-|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4	ENST00000481096.6_1_X:51805328-51806235:-|nuORF	ENST00000481096.6_1_X:51805328-51806235:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3164672851562	2	560.318783	1118.62301	-0.14916	-8.3576E-05	-3.4962	-0.001959	-3.6454	-0.0020426	560.3167646189008	47.733	0.96075	47.457	47.044	48.004	-0.27598					68	25	5	0	0	0	0.87448	1	4699	4699		34.173	3.6689	1	5871700			14671	6418	10358	10377	16062	16062					0.06844565756819065
ETSLLLKVA	9	Unmodified	_ETSLLLKVA_					0	0	0		nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2;nc|ENSG00000204290|Q9UIR0-3|BTNL2;nc|ENSG00000204290|Q9UIR0-2|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.28173828125	2	487.30005	972.585547	0.33021	0.00016091	-1.9241	-0.00093763	-1.5939	-0.00077671	487.2990535461738	81.023	0.65036	80.817	80.426	81.077	-0.20633					23	15	2	0	0	0	0.024263	1	9711	9711		51.335	0	1	157520			14672	10323	10359	10378	16063	16063					0.09815797762860257
ETSLRKLAR	9	Unmodified	_ETSLRKLAR_					0	0	0			REV__ENSG00000135824|ENST00000515211|RGS8	REV__ENSG00000135824|ENST00000515211|RGS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3047485351562	2	537.324922	1072.63529	-0.2878	-0.00015464	-3.7995	-0.0020415	-4.0873	-0.0021962	537.3235389338092	68.873	0.5005	68.58	68.289	68.79	-0.29266					19	12	3	0	0	0	0.024457	1	8215	8215		15.642	0	1	388460	+		14673	23582	10360	10379	16064	16064					0.10187925491527494
ETSPAKATI	9	Unmodified	_ETSPAKATI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2559814453125	2	459.250557	916.486562	-1.0889	-0.00050007	0.7677	0.00035257	-0.32117	-0.0001475	459.2512397806794	29.625	0.72627	29.625	29.37	30.096	0					44	17	4	0	0	0	0.024292	1	1806	1806		49.442	15.926	1	526350	+		14674	23664	10361	10380	16065	16065					0.024977747979505693
ETSPAKATI	9	Unmodified	_ETSPAKATI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	459.250557	916.486562	-0.44974	-0.00020654	1.2183	0.00055949	0.76854	0.00035295	459.2509869358199	29.578	0.48934	29.581	29.427	29.916	0.0031376	0.062184	9.7752E-05	NaN	25.574	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600910	+		14675	23664	10361	10380							0.024977747979505693
ETSPDLVGIK	10	Unmodified	_ETSPDLVGIK_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.8008422851562	2	529.790047	1057.56554	-1.1223	-0.00059459	3.408	0.0018055	2.2856	0.0012109	529.7916485168834	38.511	0.47669	38.289	38.021	38.498	-0.22149					19	12	2	0	0	0	0.03519	1	3204	3204		47.657	17.34	1	335370			14676	6240	10362	10381	16066	16066					0.03906002032226752
ETSPDLVGIK	10	Unmodified	_ETSPDLVGIK_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.790047	1057.56554	-1.7067	-0.0009042	7.6939	0.0040761	5.9871	0.0031719	529.794031039328	38.28	0.27415	38.28	38.199	38.473	0	0.00042065	0.0041236	NaN	47.657	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202220			14677	6240	10362	10381							0.03906002032226752
ETSPLGNAR	9	Unmodified	_ETSPLGNAR_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.97149658203125	2	472.743431	943.472308	-0.24239	-0.00011459	4.3135	0.0020392	4.0711	0.0019246	472.7453100059999	49.16	0.47621	48.881	48.647	49.123	-0.27977					22	12	2	0	0	0	0.024427	1	4933	4933		19.997	0	1	331530			14678	3389	10363	10382	16067	16067					-0.001688776303353734
ETSPRPGAP	9	Unmodified	_ETSPRPGAP_					0	0	0		ENST00000368936.5_1_1:150981012-150997089:+|nuORF;ENST00000368935.1_1_1:150981012-150999711:+|nuORF;ENST00000431193.5_3_1:150981012-150998071:+|nuORF;ENST00000462440.5_1_1:150981012-150999718:+|nuORF;ENST00000475722.5_1_1:150981012-150999718:+|nuORF	ENST00000368936.5_1_1:150981012-150997089:+|nuORF	ENST00000368936.5_1_1:150981012-150997089:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.2607727050781	2	456.232699	910.450845	-0.12241	-5.5849E-05	0.52294	0.00023858	0.40052	0.00018273	456.2329255862632	29.531	0.88291	29.381	28.826	29.709	-0.14952					59	20	4	0	0	0	0.024354	1	1747	1747		30.504	3.8107	1	916790			14679	12909	10364	10383	16068	16068					-0.007962626590483524
ETSRPNMKKT	10	Oxidation (M)	_ETSRPNM(Oxidation (M))KKT_		ETSRPNM(1)KKT		ETSRPNM(54)KKT	0	0	1			REV__ENSG00000198763|ENST00000361453|MT-ND2	REV__ENSG00000198763|ENST00000361453|MT-ND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.2070617675781	3	403.208167	1206.60267	-0.31353	-0.00012642	-2.4314	-0.00098036	-2.7449	-0.0011068	403.2071815592804	35.012	1.2319	34.99	34.551	35.783	-0.021767					87	31	4	0	0	0	0.9068	1	2630	2630		53.597	8.5747	1	7338900	+		14680	28469	10365	10384	16069	16069		844			0.007633503063289027
ETSRTLTVR	9	Unmodified	_ETSRTLTVR_					0	0	0		ENST00000349004.5_1_20:35317174-35350089:-|nuORF	ENST00000349004.5_1_20:35317174-35350089:-|nuORF	ENST00000349004.5_1_20:35317174-35350089:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7889404296875	2	531.798737	1061.58292	-0.46379	-0.00024664	4.1695	0.0022174	3.7057	0.0019707	531.8006300276439	64.161	0.5566	63.968	63.717	64.273	-0.19244					24	13	2	0	0	0	0.024323	1	7296	7296		27.882	0	1	957720			14681	12586	10366	10385	16070	16070					0.054593423579035516
ETSVLVLRKP	10	Unmodified	_ETSVLVLRKP_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2880859375	2	571.350606	1140.68666	-1.0872	-0.00062115	1.2922	0.00073832	0.20508	0.00011717	571.3511888656949	65.614	0.37166	65.401	65.175	65.547	-0.21327					13	8	2	0	0	0	0.03519	1	7492	7492		23.523	8.6578	1	115760			14682	1911	10367	10386	16071	16071					0.12194249465551366
ETSVMSNRG	9	Unmodified	_ETSVMSNRG_					0	0	0			REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2943420410156	2	490.726923	979.439294	-0.18623	-9.1387E-05	-1.9944	-0.00097871	-2.1806	-0.0010701	490.7258394109693	59.96	0.70789	59.76	59.463	60.17	-0.20016					50	18	4	0	0	0	0.024427	1	6794	6794		42.396	5.237	1	1759400	+		14683	27082	10368	10387	16072	16072					-0.051248277446802604
ETSVQRESID	10	Unmodified	_ETSVQRESID_					0	0	0			REV__ENSG00000123595|ENST00000464506|RAB9A	REV__ENSG00000123595|ENST00000464506|RAB9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	581.2922973632812	2	582.280574	1162.5466	-0.64144	-0.0003735	3.8179	0.0022231	3.1765	0.0018496	582.2827147785069	99.149	0.3997	99.159	98.957	99.357	0.010239					13	8	2	0	0	0	0.03519	1	12649	12649		28.081	3.5623	1	42662	+		14684	22709	10369	10388	16073	16073					-0.028175793294849427
ETSWEEQLL	9	Unmodified	_ETSWEEQLL_					0	0	0		nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENSG00000150764|ENST00000440460|DIXDC1	nc|ENSG00000150764|Q155Q3-2|DIXDC1	nc|ENSG00000150764|Q155Q3-2|DIXDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.8110961914062	2	567.769311	1133.52407	-0.80479	-0.00045694	2.3513	0.001335	1.5465	0.00087808	567.7705460368337	56.65	0.47602	56.486	56.165	56.641	-0.16431					16	12	2	0	0	0	0.024477	1	6244	6244		20.947	0	1	95194			14685	6153	10370	10389	16074	16074					-0.03735178727083621
ETSWEEQLL	9	Unmodified	_ETSWEEQLL_					0	0	0		nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENSG00000150764|ENST00000440460|DIXDC1	nc|ENSG00000150764|Q155Q3-2|DIXDC1	nc|ENSG00000150764|Q155Q3-2|DIXDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	567.769311	1133.52407	-1.1772	-0.00066838	2.0378	0.001157	0.86064	0.00048865	567.7707946799652	56.63	0.71245	56.728	56.136	56.849	0.097893	0.12087	-0.00017062	NaN	32.812	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129300			14686	6153	10370	10389							-0.03735178727083621
ETSYTKRHQW	10	Unmodified	_ETSYTKRHQW_					0	0	0			REV__ENST00000533777.5_1_15:79224365-79230096:-|nuORF	REV__ENST00000533777.5_1_15:79224365-79230096:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	446.74969482421875	3	445.886192	1334.63675	-0.41539	-0.00018522	-1.0451	-0.000466	-1.4605	-0.00065122	445.88572965300096	33.545	0.69776	33.345	32.896	33.594	-0.20019					24	17	2	0	0	0	0.03519	1	2386	2386		21.686	6.9921	1	413290	+		14687	34620	10371	10390	16075	16075					-0.017184852103810044
ETTFVENTF	9	Unmodified	_ETTFVENTF_					0	0	0			REV__ENSG00000088053|ENST00000310373|GP6	REV__ENSG00000088053|ENST00000310373|GP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.298095703125	2	544.250754	1086.48696	-0.40418	-0.00021998	-1.687	-0.00091818	-2.0912	-0.0011382	544.2495142269833	23.771	0.51782	23.591	23.395	23.913	-0.17989					24	11	3	0	0	0	0.024427	1	1001	1001		26.693	3.6504	1	102650	+		14688	20807	10372	10391	16076	16076					-0.05282850272851647
ETTLLNAKP	9	Unmodified	_ETTLLNAKP_					0	0	0			REV__nc|ENSG00000124615|Q9NZB8-4|MOCS1	REV__nc|ENSG00000124615|Q9NZB8-4|MOCS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3085632324219	2	493.779482	985.544411	-0.0037809	-1.8669E-06	-0.33279	-0.00016432	-0.33657	-0.00016619	493.7792377162153	79.2	0.75097	79.2	79.035	79.786	0					34	17	3	0	0	0	0.024539	1	9815	9815		20.947	0	1	281550	+		14689	22780	10373	10392	16077	16077					0.051060367233731085
ETTLYPIQV	9	Unmodified	_ETTLYPIQV_					0	0	0			REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.25830078125	2	532.28714	1062.55973	-0.19538	-0.000104	1.2412	0.00066067	1.0458	0.00055667	532.2878128274846	68.832	1.3444	68.59	68.187	69.532	-0.24277					51	32	2	0	0	0	0.024427	1	8098	8098		26.693	0	1	215250	+		14690	26409	10374	10393	16078	16078					0.030949035205594555
ETTMVILTLL	10	Unmodified	_ETTMVILTLL_					0	0	0		ENST00000333891.13_1_7:82467561-82467600:-|nuORF	ENST00000333891.13_1_7:82467561-82467600:-|nuORF	ENST00000333891.13_1_7:82467561-82467600:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.329345703125	2	567.32795	1132.64135	0.34076	0.00019332	2.9064	0.0016489	3.2472	0.0018422	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0992	1	11214	11214		32.812	3.6424	1	4116000			14691	12371	10375	10394	16079	16079					0.08033262888170611
ETTPKKEAPK	10	Unmodified	_ETTPKKEAPK_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2369384765625	2	564.816596	1127.61864	-0.92347	-0.00052159	-0.08765	-4.9506E-05	-1.0111	-0.0005711	564.8166861711827	45.946	0.5166	45.743	45.528	46.044	-0.20226					24	13	2	0	0	0	0.03519	1	4417	4417		31.53	4.8369	1	259300	+		14692	26863	10376	10395	16080	16080					0.059933798148904316
ETTPKKEAPK	10	Unmodified	_ETTPKKEAPK_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.816596	1127.61864	-0.52479	-0.00029641	-0.011873	-6.706E-06	-0.53667	-0.00030312	564.8165088851297	45.777	0.40834	45.777	45.613	46.021	0	0.021816	0.0001519	NaN	29.17	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228710	+		14693	26863	10376	10395							0.059933798148904316
ETTPKKEAPK	10	Unmodified	_ETTPKKEAPK_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.816596	1127.61864	-1.0071	-0.0005688	-0.81625	-0.00046103	-1.8233	-0.0010298	565.3171228050994	45.85	0.37522	45.699	45.512	45.888	-0.15156	-0.056377	-0.00075675	NaN	29.17	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252190	+		14694	26863	10376	10395							0.059933798148904316
ETTPKKEAPK	10	Unmodified	_ETTPKKEAPK_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.816596	1127.61864	0.03139	1.7729E-05	-0.072523	-4.0962E-05	-0.041133	-2.3232E-05	564.8163649149957	45.893	0.46224	45.797	45.461	45.923	-0.096649	0.041432	8.3388E-05	NaN	29.17	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280310	+		14695	26863	10376	10395							0.059933798148904316
ETTPKKEAPK	10	Unmodified	_ETTPKKEAPK_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.816596	1127.61864	-0.18926	-0.0001069	-0.10265	-5.7978E-05	-0.29191	-0.00016488	564.8163424894695	46.021	0.52067	45.76	45.486	46.006	-0.26118	0.0047844	4.9356E-05	NaN	29.17	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307950	+		14696	26863	10376	10395							0.059933798148904316
ETTQKLTVS	9	Unmodified	_ETTQKLTVS_					0	0	0		nc|ENSG00000169083|P10275-2|AR;ENSG00000169083|ENST00000374690|AR	nc|ENSG00000169083|P10275-2|AR	nc|ENSG00000169083|P10275-2|AR	MSMS	OPSCC_40_ClassI_Rep-2	5	503.7779541015625	2	503.774396	1005.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.435	1	71.173	70.673	71.673	-0.26199								0	0	0	0.49967	1	8349	8349		52.937	2.9122	1				14697	7899	10377	10396	16081	16081					0.0316942899814876
ETTRERLK	8	Unmodified	_ETTRERLK_					0	0	0			REV__ENST00000534336.1_1_11:65266767-65266884:+|nuORF	REV__ENST00000534336.1_1_11:65266767-65266884:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2401733398438	2	516.793455	1031.57236	0.14137	7.306E-05	-3.3343	-0.0017231	-3.1929	-0.0016501	517.294639608411	78.734	0.3046	78.578	78.34	78.645	-0.15592					9	6	2	0	0	0	0.027866	1	9385	9385		27.882	0	1	23527	+		14698	34634	10378	10397	16082	16082					0.057833597034687045
ETTRFDFSI	9	Unmodified	_ETTRFDFSI_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3;REV__nc|ENSG00000021645|Q9Y4C0|NRXN3;REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3084106445312	2	558.272021	1114.52949	-0.85469	-0.00047715	-1.1616	-0.00064849	-2.0163	-0.0011256	558.271005028362	61.759	0.56314	61.581	61.203	61.766	-0.17782					17	13	2	0	0	0	0.024541	1	6877	6877		25.574	10.709	1	205730	+		14699	27301;19996;36441	10379	10398	16083	16083					-0.023194551446067635
ETTRFDFSI	9	Unmodified	_ETTRFDFSI_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3;REV__nc|ENSG00000021645|Q9Y4C0|NRXN3;REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.272021	1114.52949	-0.21808	-0.00012175	-1.9687	-0.0010991	-2.1868	-0.0012208	558.2706579169993	61.871	0.38829	61.657	61.544	61.932	-0.21375	-0.0059244	-0.00068034	NaN	40.778	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270190	+		14700	27301;19996;36441	10379	10398							-0.023194551446067635
ETTRFDFSI	9	Unmodified	_ETTRFDFSI_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3;REV__nc|ENSG00000021645|Q9Y4C0|NRXN3;REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.272021	1114.52949	-0.23629	-0.00013192	-1.1472	-0.00064043	-1.3835	-0.00077234	558.2713164493059	62.008	0.35379	61.751	61.505	61.859	-0.25725	0.087861	0.00023699	NaN	40.778	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195240	+		14701	27301;19996;36441	10379	10398							-0.023194551446067635
ETTVQKVAR	9	Unmodified	_ETTVQKVAR_					0	0	0		ENSG00000175467|ENST00000312397|SART1;ENST00000533386.1_1_11:65744508-65745532:+|nuORF	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3087158203125	2	516.29583	1030.57711	0.037006	1.9106E-05	-2.6597	-0.0013732	-2.6227	-0.0013541	516.2941162603746	86.997	1.2267	86.997	86.386	87.613	0					52	28	3	0	0	0	0.024477	1	10998	10998		14.865	0	1	168690			14702	8561	10380	10399	16084	16084					0.06304243846238933
ETVFAAVLSS	10	Unmodified	_ETVFAAVLSS_					0	0	0		ENST00000391787.6_2_19:52901126-52901768:+|nuORF	ENST00000391787.6_2_19:52901126-52901768:+|nuORF	ENST00000391787.6_2_19:52901126-52901768:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.271484375	2	512.27149	1022.52843	0.13357	6.8426E-05	-0.47048	-0.00024101	-0.33691	-0.00017259	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	1.1307	1	13037	13037		26.693	2.1889	1	236480			14703	13394	10381	10400	16085	16085					0.01806330486465413
ETVFNLVSP	9	Unmodified	_ETVFNLVSP_					0	0	0		ENST00000514435.1_1_4:151935569-151935794:-|nuORF	ENST00000514435.1_1_4:151935569-151935794:-|nuORF	ENST00000514435.1_1_4:151935569-151935794:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	503.26605224609375	2	503.266207	1004.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.095	1	70.824	70.324	71.324	-0.27185								0	0	0	0.29326	1	8288	8288		68.787	12.066	1				14704	15880	10382	10401	16086	16086					0.015783478320372524
ETVFPSSHL	9	Unmodified	_ETVFPSSHL_					0	0	0			REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF	REV__ENST00000508165.1_1_4:135249290-135249890:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.281982421875	2	508.756007	1015.49746	-0.46781	-0.000238	1.4704	0.00074807	1.0026	0.00051007	508.7580476660878	23.419	0.41491	23.239	23.021	23.436	-0.17989					16	9	3	0	0	0	0.024323	1	927	927		63.306	22.734	1	145670	+		14705	34061	10383	10402	16087	16087					-0.00966822827751912
ETVGEDESL	9	Unmodified	_ETVGEDESL_					0	0	0			REV__ENSG00000167670|ENST00000301280|CHAF1A	REV__ENSG00000167670|ENST00000301280|CHAF1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2769470214844	2	489.716744	977.418936	-0.45125	-0.00022098	1.6097	0.0007883	1.1584	0.00056731	489.7174189425002	76.749	0.411	76.521	76.239	76.65	-0.22843					13	9	2	0	0	0	0.024294	1	9427	9427		45.952	0	1	115940	+		14706	26174	10384	10403	16088	16088					-0.0706771992350923
ETVGGNTLGSG	11	Unmodified	_ETVGGNTLGSG_					0	0	0			REV__ENST00000449470.6_3_4:39459222-39459833:-|nuORF	REV__ENST00000449470.6_3_4:39459222-39459833:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.791748046875	2	496.238178	990.461803	-0.064587	-3.205E-05	0.13774	6.8351E-05	0.073151	3.6301E-05	496.2382381970583	34.588	0.53522	34.588	34.371	34.906	0					23	13	3	0	0	0	0.024059	1	2628	2628		61.691	1.573	1	122730	+		14707	32678	10385	10404	16089	16089					-0.03380905075403007
ETVGGNTLGSG	11	Unmodified	_ETVGGNTLGSG_					0	0	0			REV__ENST00000449470.6_3_4:39459222-39459833:-|nuORF	REV__ENST00000449470.6_3_4:39459222-39459833:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.238178	990.461803	-0.14668	-7.2791E-05	-0.17934	-8.8996E-05	-0.32603	-0.00016179	496.2382542296655	34.389	0.34306	34.385	34.225	34.568	-0.0045624	-0.10152	-0.00016081	NaN	61.691	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95755	+		14708	32678	10385	10404							-0.03380905075403007
ETVHRMLL	8	Unmodified	_ETVHRMLL_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.79638671875	2	499.776219	997.537886	0.99532	0.00049744	-1.2142	-0.00060683	-0.21888	-0.00010939	499.775513194747	18.052	0.34641	17.896	17.655	18.002	-0.15637					12	6	2	0	0	0	0.027866	1	259	259		20.482	0	1	26060			14709	1051	10386	10405	16090	16090					0.03901820291014246
ETVKAAKVW	9	Unmodified	_ETVKAAKVW_					0	0	0		nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4;ENST00000554063.1_1_14:23416808-23417238:-|nuORF;ENST00000556421.5_1_14:23416818-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000556421.5_1_14:23416818-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-3|HAUS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2971801757812	2	516.297842	1030.58113	0.086749	4.4788E-05	-2.5022	-0.0012919	-2.4154	-0.0012471	516.2963871309064	36.943	1.0938	36.75	36.375	37.469	-0.193					96	27	5	0	0	0	0.26966	1	2910	2910		79.713	10.926	1	5683300			14710	1974;16709	10387	10406	16091	16091					0.06706333339934645
ETVKAAKVW	9	Unmodified	_ETVKAAKVW_					0	0	0		nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4;ENST00000554063.1_1_14:23416808-23417238:-|nuORF;ENST00000556421.5_1_14:23416818-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000556421.5_1_14:23416818-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-3|HAUS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2972412109375	2	516.297842	1030.58113	-0.41218	-0.00021281	-2.099	-0.0010837	-2.5112	-0.0012965	516.2966569634165	36.966	1.0255	36.746	36.365	37.39	-0.2195					79	25	4	0	0	0	0.29158	1	2913	2913		76.774	2.5191	1	5890400			14711	1974;16709	10387	10406	16092	16092					0.06706333339934645
ETVKDFWRM	9	Unmodified	_ETVKDFWRM_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	605.304443359375	2	606.297516	1210.58048	-1.1893	-0.00072105	3.5469	0.0021505	2.3577	0.0014295	606.3008975975154	61.625	0.75961	61.447	61.203	61.963	-0.17781					32	18	3	0	0	0	0.024503	1	6872	6872		24.519	16.284	1	356560			14712	9818	10388	10407	16093	16093					-0.01638829371427164
ETVKDFWRM	9	Unmodified	_ETVKDFWRM_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	606.297516	1210.58048	-0.31681	-0.00019208	4.3692	0.002649	4.0524	0.002457	606.3002321295157	61.887	0.59467	61.63	61.423	62.018	-0.25725	0.074947	0.00039477	NaN	24.519	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369970			14713	9818	10388	10407							-0.01638829371427164
ETVKECILF	9	Unmodified	_ETVKECILF_					0	0	0			REV__ENST00000397381.4_1_19:15947062-15947119:+|nuORF	REV__ENST00000397381.4_1_19:15947062-15947119:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7940673828125	2	541.283543	1080.55253	-0.038207	-2.0681E-05	1.14	0.00061705	1.1018	0.00059637	541.2856281876682	51.668	0.71095	51.549	51.122	51.833	-0.11876					24	18	2	0	0	0	0.02435	1	5288	5288		42.396	3.1433	1	236630	+		14714	31768	10389	10408	16094	16094					0.015478476484986459
ETVKLARSV	9	Unmodified	_ETVKLARSV_					0	0	0		ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.8008117675781	2	501.800749	1001.58694	-0.8903	-0.00044676	-0.14363	-7.2074E-05	-1.0339	-0.00051883	501.8007093755976	46.544	1.5811	46.391	46.024	47.606	-0.153					153	43	6	0	0	0	0.45795	1	4652	4652		62.107	0.41614	1	41649000			14715	8535	10390	10409	16095	16095					0.08621431851611305
ETVKYFLLI	9	Unmodified	_ETVKYFLLI_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.73388671875	2	563.33135	1124.64815	0.25514	0.00014373	-3.8996	-0.0021968	-3.6444	-0.002053	563.32908576677	79.096	0.54101	78.864	78.607	79.148	-0.23141					27	12	3	0	0	0	0.024541	1	9421	9421		11.511	0	1	217180	+		14716	28494	10391	10410	16096	16096					0.09080943831054356
ETVLDYLLT	9	Unmodified	_ETVLDYLLT_					0	0	0			REV__ENSG00000120725|ENST00000394817|SIL1	REV__ENSG00000120725|ENST00000394817|SIL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.770751953125	2	533.786973	1065.55939	-0.16691	-8.9094E-05	3.3876	0.0018083	3.2207	0.0017192	533.7888963607137	63.209	0.56965	62.951	62.706	63.276	-0.25824					21	13	2	0	0	0	0.024354	1	7125	7125		23.042	0	1	160860	+		14717	22555	10392	10411	16097	16097					0.02923483800714166
ETVLLRKP	8	Unmodified	_ETVLLRKP_					0	0	0			REV__ENST00000479094.5_1_9:96212872-96213460:-|nuORF	REV__ENST00000479094.5_1_9:96212872-96213460:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2953796386719	2	478.300384	954.586216	2.2136	0.0010587	-2.0128	-0.0009627	0.2008	9.6041E-05	478.2991370699927	24.505	0.47522	24.324	24.072	24.547	-0.18089					19	10	2	0	0	0	0.027866	1	1017	1017		35.618	0	1	175620	+		14718	32316	10393	10412	16098	16098					0.10710637202555517
ETVLRYQAE	9	Unmodified	_ETVLRYQAE_					0	0	0			REV__ENST00000534774.1_1_11:108535817-108546498:+|nuORF	REV__ENST00000534774.1_1_11:108535817-108546498:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.78515625	2	554.785296	1107.55604	-0.55309	-0.00030685	0.26039	0.00014446	-0.2927	-0.00016239	554.7853805662158	43.243	0.90407	43.243	42.932	43.836	0					54	24	3	0	0	0	0.37611	1	4042	4042		67.494	0.53175	1	3462700	+		14719	19659	10394	10413	16099	16099					0.006562337466903045
ETVLTETPQ	9	Unmodified	_ETVLTETPQ_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2819519042969	2	509.258579	1016.50261	0.24952	0.00012707	1.6284	0.00082928	1.8779	0.00095635	509.2573731297167	23.364	0.31199	23.162	22.967	23.279	-0.20193					8	6	2	0	0	0	0.02435	1	910	910		42.396	14.514	1	27141			14720	751	10395	10414	16100	16100					-0.004985637557979317
ETVQLSVPI	9	Unmodified	_ETVQLSVPI_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2836608886719	2	493.281857	984.549162	-0.20827	-0.00010274	0.26286	0.00012966	0.054581	2.6924E-05	493.2818010870614	71.277	0.93298	71.004	70.657	71.59	-0.27277					46	21	3	0	0	0	0.2508	1	8310	8310		82.241	2.5279	1	1564100	+		14721	24569	10396	10415	16101	16101					0.05626920866131968
ETVRIVALD	9	Unmodified	_ETVRIVALD_					0	0	0		ENSG00000087077|ENST00000200457|TRIP6;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000145012|ENST00000617246|LPP	ENSG00000087077|ENST00000200457|TRIP6	ENSG00000087077|ENST00000200457|TRIP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2920227050781	2	508.292756	1014.57096	-0.66552	-0.00033828	-0.024474	-1.244E-05	-0.68999	-0.00035072	508.2927383105903	64.701	1.3521	64.446	64.038	65.39	-0.25563					56	33	2	0	0	0	0.31037	1	7366	7366		74.255	2.3776	1	5339200			14722	1832	10397	10416	16102	16102					0.06425725614712974
ETVRLTLTA	9	Unmodified	_ETVRLTLTA_					0	0	0			REV__ENSG00000173988|ENST00000595396|LRRC63	REV__ENSG00000173988|ENST00000595396|LRRC63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.75421142578125	2	502.292756	1002.57096	-0.55714	-0.00027985	0.61823	0.00031053	0.06109	3.0685E-05	502.29303128128106	26.29	0.90273	26.267	25.998	26.901	-0.023088					38	21	3	0	0	0	0.024523	1	1318	1318		29.15	18.884	1	270220	+		14723	26825	10398	10417	16103	16103					0.06977725614706287
ETVRNNQEL	9	Unmodified	_ETVRNNQEL_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.7802734375	2	551.778002	1101.54145	-0.5036	-0.00027788	3.2949	0.001818	2.7913	0.0015402	551.779784074571	45.335	1.2431	45.235	44.977	46.22	-0.099449					108	34	5	0	0	0	0.2508	1	4300	4300		82.241	4.9229	1	10720000	+		14724	24099	10399	10418	16104	16104					-0.005258384014496187
ETVSSKII	8	Unmodified	_ETVSSKII_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7530517578125	2	438.755475	875.496398	2.1216	0.00093085	0.08813	3.8667E-05	2.2097	0.00096952	438.7555582741151	23.301	0.37214	23.11	22.988	23.36	-0.19117					13	8	2	0	0	0	0.027866	1	892	892		35.201	5.3592	1	48018			14725	5140	10400	10419	16105	16105					0.05366962803338993
ETVSSKII	8	Unmodified	_ETVSSKII_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	438.755475	875.496398	0.075909	3.3306E-05	1.4043	0.00061616	1.4802	0.00064947	438.7561550479623	23.303	0.27549	23.101	22.92	23.195	-0.20193	-0.014114	-9.1151E-05	NaN	35.201	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47009			14726	5140	10400	10419							0.05366962803338993
ETVSSKII	8	Unmodified	_ETVSSKII_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	438.755475	875.496398	-0.40759	-0.00017883	2.684	0.0011776	2.2764	0.0009988	438.75652973406534	23.315	0.26778	23.135	22.975	23.242	-0.17989	0.019295	0.0010318	NaN	35.201	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45163			14727	5140	10400	10419							0.05366962803338993
ETVTLETM	8	Oxidation (M)	_ETVTLETM(Oxidation (M))_		ETVTLETM(1)		ETVTLETM(83)	0	0	1			REV__nc|ENSG00000160588|Q6UWV2-2|MPZL3	REV__nc|ENSG00000160588|Q6UWV2-2|MPZL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2213439941406	2	470.220608	938.426663	0.090917	4.2751E-05	2.0393	0.00095894	2.1303	0.0010017	470.2214480358267	68.405	1.6414	68.144	67.774	69.415	-0.26166					103	39	4	0	0	0	0.52467	1	7943	7943		83.287	11.909	1	5075400	+		14728	25328	10401	10420	16106	16106		750			-0.045012839275727856
ETVVFNFNL	9	Unmodified	_ETVVFNFNL_					0	0	0			REV__ENST00000225394.7_1_17:27901080-27901281:-|nuORF	REV__ENST00000225394.7_1_17:27901080-27901281:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.282470703125	2	541.779482	1081.54441	-0.98625	-0.00053433	0.062953	3.4106E-05	-0.9233	-0.00050022	541.7795034944302	80.605	0.36495	80.605	80.457	80.822	0					16	8	2	0	0	0	0.024354	1	10002	10002		30.504	0	1	530930	+		14729	29371	10402	10421	16107	16107					0.0069003672338112665
ETVWQIGF	8	Unmodified	_ETVWQIGF_					0	0	0			REV__ENSG00000146263|ENST00000683635|MMS22L	REV__ENSG00000146263|ENST00000683635|MMS22L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.773681640625	2	490.247818	978.481082	-0.49514	-0.00024274	-3.8748	-0.0018996	-4.37	-0.0021424	490.24592746585336	28.455	0.75485	28.286	27.886	28.641	-0.16897					35	17	3	0	0	0	0.027866	1	1620	1620		42.474	24.15	1	423400	+		14730	24475	10403	10422	16108	16108					-0.009019039938380047
ETWDGKNSRL	10	Unmodified	_ETWDGKNSRL_					0	0	0		ENST00000267205.6_1_12:122216659-122216707:-|nuORF	ENST00000267205.6_1_12:122216659-122216707:-|nuORF	ENST00000267205.6_1_12:122216659-122216707:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5362548828125	3	402.53516	1204.58365	-0.7007	-0.00028206	3.8518	0.0015505	3.1511	0.0012684	402.5365031423494	34.967	4.3177	34.78	32.897	37.215	-0.18675					221	111	5	0	0	0	0.91448	1	2585	2585		53.089	2.2977	1	1468600			14731	11616	10404	10423	16109	16109					-0.010458629930553798
ETWSFDSSHAT	11	Unmodified	_ETWSFDSSHAT_					0	0	0			REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2;REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF	REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5132141113281	3	423.179042	1266.5153	-0.17105	-7.2385E-05	-3.3423	-0.0014144	-3.5133	-0.0014868	423.51250296030435	32.081	0.22993	32.144	32.085	32.315	0.062885					7	5	2	0	0	0	0.024788	1	2138	2138		8.7993	3.1005	1	37815	+		14732	23080;33212	10405	10424	16110	16110					-0.10730152363544221
ETYRKRKVQ	9	Unmodified	_ETYRKRKVQ_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5538635253906	3	403.235045	1206.6833	-0.38411	-0.00015488	0.78597	0.00031693	0.40187	0.00016205	403.2352428872268	29.963	0.68077	29.813	29.418	30.099	-0.14952					35	15	3	0	0	0	0.024527	1	1801	1801		8.2351	0	1	149210	+		14733	26560	10406	10425	16111	16111					0.08822999411563615
ETYRKRKVQ	9	Unmodified	_ETYRKRKVQ_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	403.235045	1206.6833	0.14182	5.7186E-05	-0.26557	-0.00010709	-0.12375	-4.9901E-05	403.2348935725208	30.051	0.68057	29.807	29.441	30.122	-0.24415	0.0033594	-0.00068961	NaN	12.812	34	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146120	+		14734	26560	10406	10425							0.08822999411563615
ETYTVEEVKV	10	Unmodified	_ETYTVEEVKV_					0	0	0		nc|ENSG00000188452|Q49MI3-3|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	599.3322143554688	2	598.805894	1195.59723	-0.56546	-0.0003386	0.83033	0.00049721	0.26488	0.00015861	598.8060855131743	58.692	0.59554	58.504	58.223	58.819	-0.18795					29	14	3	0	0	0	0.03519	1	6422	6422		64.207	7.4862	1	218440			14735	9720	10407	10426	16112	16112					0.007259499955125648
ETYTVEEVKV	10	Unmodified	_ETYTVEEVKV_					0	0	0		nc|ENSG00000188452|Q49MI3-3|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	598.805894	1195.59723	-0.37919	-0.00022706	0.34528	0.00020675	-0.033915	-2.0308E-05	598.8060404059105	58.708	0.44276	58.527	58.308	58.75	-0.18134	-0.0063767	0.00034372	NaN	64.207	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186700			14736	9720	10407	10426							0.007259499955125648
ETYTVEEVKV	10	Unmodified	_ETYTVEEVKV_					0	0	0		nc|ENSG00000188452|Q49MI3-3|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	598.805894	1195.59723	0.43233	0.00025888	-0.99431	-0.0005954	-0.56198	-0.00033652	598.8056579082033	58.81	0.43826	58.568	58.3	58.738	-0.24165	0.035088	-0.0012606	NaN	64.207	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160040			14737	9720	10407	10426							0.007259499955125648
EVAAGPGKTGP	11	Unmodified	_EVAAGPGKTGP_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2587585449219	2	492.261456	982.50836	0.32967	0.00016228	0.40827	0.00020097	0.73793	0.00036326	492.26116751339856	41.487	1.1485	41.487	40.871	42.02	0					55	32	2	0	0	0	0.024063	1	3749	3749		65.157	6.3753	1	540080	+		14738	27517	10408	10427	16113	16113					0.016405795465288975
EVAALRKKL	9	Unmodified	_EVAALRKKL_					0	0	0		ENSG00000186185|ENST00000593135|KIF18B;nc|ENSG00000186185|Q86Y91-6|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.771240234375	2	514.334759	1026.65496	-1.0231	-0.0005262	0.34649	0.00017821	-0.67659	-0.00034799	514.3348005453503	43.429	0.54409	43.429	43.186	43.731	0					22	14	2	0	0	0	0.024405	1	4039	4039		27.882	0	1	371000			14739	9524	10409	10428	16114	16114					0.14270301502256189
EVAAPPLEKI	10	Unmodified	_EVAAPPLEKI_					0	0	0		ENST00000557803.5_1_14:102802004-102808513:+|nuORF;nc|ENSG00000022976|A8K0R7|ZNF839;nc|ENSG00000022976|A8K0R7-2|ZNF839;ENSG00000022976|ENST00000442396|ZNF839	ENST00000557803.5_1_14:102802004-102808513:+|nuORF	ENST00000557803.5_1_14:102802004-102808513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2949829101562	2	533.810782	1065.60701	0.62778	0.00033511	3.1828	0.001699	3.8106	0.0020341	533.8121730951123	96.727	0.92867	96.727	96.44	97.369	-3.0518E-05					33	20	2	0	0	0	0.03519	1	12230	12230		62.107	23.301	1	426940			14740	966	10410	10429	16115	16115					0.07683182791561194
EVAARLAIER	10	Unmodified	_EVAARLAIER_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.2886962890625	2	564.330205	1126.64586	0.45349	0.00025592	2.7913	0.0015752	3.2448	0.0018311	564.3316110263872	72.544	0.80025	72.263	71.991	72.791	-0.28124					49	19	4	0	0	0	0.03519	1	8771	8771		31.634	15.627	1	735140			14741	2356	10411	10430	16116	16116					0.0875990814593024
EVAARLAIER	10	Unmodified	_EVAARLAIER_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.330205	1126.64586	0.028856	1.6284E-05	3.2229	0.0018188	3.2518	0.0018351	564.3319179368915	72.212	0.79371	72.212	71.904	72.698	0	-0.048775	0.00028697	NaN	38.754	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791610			14742	2356	10411	10430							0.0875990814593024
EVAARLAIER	10	Unmodified	_EVAARLAIER_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.330205	1126.64586	0.12326	6.9557E-05	2.8852	0.0016282	3.0085	0.0016978	564.3316550171902	72.298	0.78904	72.307	71.988	72.777	0.0097733	0.046587	-9.421E-05	NaN	38.754	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934070			14743	2356	10411	10430							0.0875990814593024
EVAAVKRV	8	Unmodified	_EVAAVKRV_					0	0	0		ENST00000508276.1_1_4:2933242-2933551:-|nuORF	ENST00000508276.1_1_4:2933242-2933551:-|nuORF	ENST00000508276.1_1_4:2933242-2933551:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.755126953125	2	436.271627	870.528701	0.25574	0.00011157	-0.68865	-0.00030044	-0.43291	-0.00018887	436.27130844051266	23.051	0.28082	22.85	22.733	23.014	-0.20193					9	5	3	0	0	0	0.027866	1	877	877		33.516	17.042	1	30531			14744	15778	10412	10431	16117	16117					0.08825794996994318
EVADPEKR	8	Unmodified	_EVADPEKR_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.28570556640625	2	472.245806	942.47706	-0.68305	-0.00032257	1.0282	0.00048556	0.34513	0.00016299	472.24612527178357	22.095	0.86367	22.169	21.882	22.745	0.073956					24	17	2	0	0	0	0.027866	1	750	750		30.504	0	1	60944	+		14745	28289	10413	10432	16118	16118					0.0035200651242348613
EVAEENRLG	9	Unmodified	_EVAEENRLG_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7519836425781	2	508.753995	1015.49344	-0.023228	-1.1817E-05	0.11447	5.8237E-05	0.091242	4.642E-05	508.75396392382237	43.57	0.86941	43.601	43.267	44.136	0.030827					56	23	3	0	0	0	0.35646	1	4032	4032		68.787	2.3575	1	3441400	+		14746	36798;24957	10414	10433	16119	16119					-0.013689123214703613
EVAEENRLG	9	Unmodified	_EVAEENRLG_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	508.753995	1015.49344	-1.0632	-0.00054093	0.90336	0.00045959	-0.15988	-8.1342E-05	508.754501335589	43.539	0.76152	43.539	43.186	43.948	0	-0.025179	0.00021824	NaN	68.787	51	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3202400	+		14747	36798;24957	10414	10433							-0.013689123214703613
EVAEKLQLL	9	Unmodified	_EVAEKLQLL_					0	0	0		nc|ENSG00000241258|O75575-4|CRCP	nc|ENSG00000241258|O75575-4|CRCP	nc|ENSG00000241258|O75575-4|CRCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2467041015625	2	521.810782	1041.60701	0.64897	0.00033864	-0.60371	-0.00031502	0.045268	2.3621E-05	521.8100475944725	83.358	1.1443	83.188	82.473	83.618	-0.16915					43	26	4	0	0	0	0.024319	1	10098	10098		56.721	7.2795	1	245710			14748	18755	10415	10434	16120	16120					0.08787182791570558
EVAGLQPSPN	10	Unmodified	_EVAGLQPSPN_					0	0	0			REV__ENST00000322217.5_1_19:46393737-46393884:-|nuORF	REV__ENST00000322217.5_1_19:46393737-46393884:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.32373046875	2	506.258914	1010.50327	0.46354	0.00023467	-0.86469	-0.00043776	-0.40115	-0.00020309	506.2594815820235	79.185	0.71278	78.933	78.56	79.272	-0.25229					18	16	2	0	0	0	0.03519	1	9457	9457		56.721	3.3696	1	48978	+		14749	30358	10416	10435	16121	16121					-0.0015572431609598425
EVAGVRDSVAG	11	Unmodified	_EVAGVRDSVAG_					0	0	0			REV__ENST00000453080.5_1_15:43882136-43882349:-|nuORF	REV__ENST00000453080.5_1_15:43882136-43882349:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297119140625	2	530.275095	1058.53564	-0.97092	-0.00051486	4.0526	0.002149	3.0817	0.0016342	530.2773354138371	56.611	0.47697	56.447	56.129	56.606	-0.16431					24	12	3	0	0	0	0.024793	1	6239	6239		24.519	0	1	261460	+		14750	32744	10417	10436	16122	16122					0.008710630869018132
EVAHAYNP	8	Unmodified	_EVAHAYNP_					0	0	0		nc|ENSG00000138081|Q86XK2-4|FBXO11	nc|ENSG00000138081|Q86XK2-4|FBXO11	nc|ENSG00000138081|Q86XK2-4|FBXO11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.26666259765625	2	450.714142	899.413731	0.15864	7.1503E-05	-3.6298	-0.001636	-3.4711	-0.0015645	450.7124401345532	32.631	0.8642	32.394	32.086	32.95	-0.23666					30	20	2	0	0	0	0.027866	1	2315	2315		24.203	0	1	114890			14751	18318	10418	10437	16123	16123					-0.039999342048190556
EVAHEFDP	8	Unmodified	_EVAHEFDP_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7515869140625	2	472.211432	942.408311	0.51665	0.00024397	-3.362	-0.0015876	-2.8453	-0.0013436	472.209508180124	33.647	0.83604	33.704	33.176	34.012	0.056572					30	21	2	0	0	0	0.027866	1	2413	2413		24.203	0	1	95747	+		14752	20605	10419	10438	16124	16124					-0.0651965778728254
EVAKMQKGI	9	Unmodified	_EVAKMQKGI_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.28802490234375	2	502.283877	1002.5532	-1.2671	-0.00063645	1.9122	0.00096046	0.64508	0.00032401	502.28481785948037	44.39	1.0273	44.245	43.534	44.561	-0.14471					72	29	4	0	0	0	0.80003	1	4169	4169		39.253	4.0521	1	18960000	+		14753	19887	10420	10439	16125	16125					0.05202687088217317
EVAKSAKIL	9	Unmodified	_EVAKSAKIL_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7503662109375	2	479.800217	957.585882	-0.15937	-7.6465E-05	-0.25378	-0.00012176	-0.41315	-0.00019823	479.7999254766611	30.923	0.54803	30.935	30.709	31.257	0.011797					29	12	3	0	0	0	0.022756	1	2008	2008		58.782	9.3404	1	403920	+		14754	23691	10421	10440	16126	16126					0.1053921748269886
EVAKSAKIL	9	Unmodified	_EVAKSAKIL_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.800217	957.585882	-0.60898	-0.00029219	-0.86968	-0.00041727	-1.4787	-0.00070946	479.79967768268637	30.917	0.25046	30.739	30.54	30.791	-0.17817	-0.1149	-0.00044958	NaN	58.782	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454250	+		14755	23691	10421	10440							0.1053921748269886
EVALLLDTV	9	Unmodified	_EVALLLDTV_					0	0	0		ENST00000470779.1_1_1:155028301-155028614:+|nuORF	ENST00000470779.1_1_1:155028301-155028614:+|nuORF	ENST00000470779.1_1_1:155028301-155028614:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2915954589844	2	486.784233	971.553913	-0.78225	-0.00038079	-0.19968	-9.7203E-05	-0.98194	-0.00047799	486.784434499162	94.506	0.47166	94.512	94.365	94.837	0.0059814					15	10	2	0	0	0	0.022924	1	11929	11929		63.306	7.8021	1	87709			14756	14939	10422	10441	16127	16127					0.06699805008884141
EVALLLDTV	9	Unmodified	_EVALLLDTV_					0	0	0		ENST00000470779.1_1_1:155028301-155028614:+|nuORF	ENST00000470779.1_1_1:155028301-155028614:+|nuORF	ENST00000470779.1_1_1:155028301-155028614:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.784233	971.553913	-0.76124	-0.00037056	-0.22802	-0.000111	-0.98927	-0.00048156	486.784179452432	94.396	0.71355	94.258	94.051	94.765	-0.13779	-0.080586	0.00047806	NaN	63.306	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90110			14757	14939	10422	10441							0.06699805008884141
EVALTSKEED	10	Unmodified	_EVALTSKEED_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8095092773438	2	560.772051	1119.52955	-0.88865	-0.00049833	1.6826	0.00094358	0.794	0.00044525	560.7732231212541	82.388	0.69445	82.248	82.043	82.737	-0.14014					22	15	2	0	0	0	0.03519	1	9974	9974		58.782	0	1	94289			14758	3997	10423	10442	16128	16128					-0.025434999352683008
EVAMQDEHL	9	Unmodified	_EVAMQDEHL_					0	0	0			REV__TALDO1|p.N299del|1|0.27|ENSG00000177156|chr11:764345-764347|ACA/-|inframe_deletion	REV__TALDO1|p.N299del|1|0.27|ENSG00000177156|chr11:764345-764347|ACA/-|inframe_deletion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7686157226562	2	536.242406	1070.47026	0.65795	0.00035282	3.6529	0.0019588	4.3108	0.0023117	536.748145529793	36.967	0.19336	36.967	36.887	37.081	0					5	4	2	0	0	0	0.024397	1	2982	2982		56.721	17.468	1	30085	+		14759	37675	10424	10443	16129	16129					-0.062156744304502354
EVAPLLPK	8	Unmodified	_EVAPLLPK_					0	0	0			REV__ENST00000544306.5_1_2:11264812-11272140:-|nuORF	REV__ENST00000544306.5_1_2:11264812-11272140:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.7719421386719	2	433.770929	865.527304	0.26144	0.0001134	3.2544	0.0014117	3.5158	0.0015251	433.7721214046263	72.111	2.1183	71.91	70.838	72.956	-0.2012					92	50	3	0	0	0	1.0239	1	8455	8455		33.516	11.813	1	1110700	+		14760	32647	10425	10444	16130	16130					0.08916160908233906
EVAQLGRVL	9	Unmodified	_EVAQLGRVL_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2872314453125	2	492.795466	983.57638	-0.54886	-0.00027047	0.27754	0.00013677	-0.27132	-0.0001337	492.795350927349	30.186	0.70087	30.194	29.88	30.581	0.0086689					25	16	2	0	0	0	0.024477	1	1869	1869		44.117	16.235	1	180740	+		14761	36798;24957	10426	10445	16131	16131					0.08393449197183145
EVAQLGRVL	9	Unmodified	_EVAQLGRVL_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.795466	983.57638	-0.99748	-0.00049155	1.5181	0.00074813	0.52066	0.00025658	492.7956806104119	30.273	0.57306	30.273	29.977	30.55	0	0.099598	0.00081607	NaN	27.882	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204360	+		14762	36798;24957	10426	10445							0.08393449197183145
EVARGPLGSGP	11	Unmodified	_EVARGPLGSGP_					0	0	0			REV__ENST00000274680.8_1_6:5261799-5368856:+|nuORF	REV__ENST00000274680.8_1_6:5261799-5368856:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7660522460938	2	520.28018	1038.54581	-0.18909	-9.8379E-05	3.3691	0.0017529	3.18	0.0016545	520.7834307739215	47.695	0.33286	47.542	47.336	47.669	-0.15301					13	9	2	0	0	0	0.024806	1	4765	4765		59.931	4.4266	1	287340	+		14763	29836	10427	10446	16132	16132					0.02807670812148899
EVARLPPTQ	9	Unmodified	_EVARLPPTQ_					0	0	0		ENST00000381774.8_1_16:12897653-12897698:-|nuORF	ENST00000381774.8_1_16:12897653-12897698:-|nuORF	ENST00000381774.8_1_16:12897653-12897698:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.32379150390625	2	505.785099	1009.55564	0.12617	6.3814E-05	-4.3127	-0.0021813	-4.1866	-0.0021175	505.7829351298057	79.858	0.67177	79.639	79.244	79.915	-0.21923					24	15	2	0	0	0	0.024337	1	9510	9510		41.427	12.257	1	163600			14764	13349	10428	10447	16133	16133					0.05124858817509903
EVARRRAL	8	Unmodified	_EVARRRAL_					0	0	0			REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2974853515625	2	485.798875	969.583196	-0.41918	-0.00020364	4.0377	0.0019615	3.6185	0.0017579	485.800570464364	67.182	0.39989	67.182	66.926	67.326	0					12	9	2	0	0	0	0.027866	1	8030	8030		21.96	0	1	306560	+		14765	37529	10429	10448	16134	16134					0.09718806868420415
EVAVHLCL	8	Carbamidomethyl (C)	_EVAVHLC(Carbamidomethyl (C))L_	EVAVHLC(1)L		EVAVHLC(47)L		0	1	0			REV__nc|ENSG00000164113|Q96M93-3|ADAD1	REV__nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2840881347656	2	470.74967	939.484787	0.40624	0.00019124	-0.51507	-0.00024247	-0.10883	-5.123E-05	470.7493005218163	50.379	0.71885	50.46	50.276	50.995	0.08099					35	20	2	0	0	0	0.027866	1	5288	5288		46.766	9.738	1	468830	+		14766	25696	10430	10449	16135	16135	340				0.012624425083345159
EVAVLKQKL	9	Unmodified	_EVAVLKQKL_					0	0	0		ENST00000510921.5_1_5:86688679-86700752:-|nuORF;ENSG00000134480|ENST00000256897|CCNH	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.771240234375	2	514.329142	1026.64373	-0.66443	-0.00034174	-0.22484	-0.00011564	-0.88927	-0.00045738	514.3287933631493	43.07	0.36543	43.07	42.967	43.332	0					13	9	2	0	0	0	0.02435	1	4039	4039		34.173	1.3601	1	82256			14767	4800	10431	10450	16136	16136					0.13147479408144136
EVAVLTVLV	9	Unmodified	_EVAVLTVLV_					0	0	0			REV__ENSG00000168703|ENST00000372785|WFDC12	REV__ENSG00000168703|ENST00000372785|WFDC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7539367675781	2	471.797143	941.579734	-0.43289	-0.00020424	-2.4555	-0.0011585	-2.8884	-0.0013627	471.7959415208435	39.316	0.42604	39.218	39.054	39.48	-0.098755					19	11	2	0	0	0	0.024381	1	3383	3383		21.96	0	1	126930	+		14768	26285	10432	10451	16137	16137					0.106606992511729
EVAYILLC	8	Unmodified	_EVAYILLC_					0	0	0		ENSG00000163352|ENST00000392487|LENEP	ENSG00000163352|ENST00000392487|LENEP	ENSG00000163352|ENST00000392487|LENEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2510681152344	2	462.248972	922.48339	-0.10913	-5.0445E-05	3.7152	0.0017174	3.6061	0.0016669	462.25055457817837	30.351	1.0963	30.201	29.835	30.931	-0.14952					67	25	4	0	0	0	0.78474	1	1907	1907		60.404	5.639	1	4626400			14769	7062	10433	10452	16138	16138					0.019048084195901538
EVCDPLLLK	9	Unmodified	_EVCDPLLLK_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2882080078125	2	515.286085	1028.55762	-0.55678	-0.0002869	3.7533	0.001934	3.1965	0.0016471	515.2880152450967	40.101	1.9114	39.951	39.553	41.464	-0.1497					97	50	4	0	0	0	0.43973	1	3448	3448		63.306	6.5852	1	21703000	+		14770	25098	10434	10453	16139	16139					0.044481515111101544
EVCLDRLGM	9	Unmodified	_EVCLDRLGM_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7;WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.781494140625	2	518.25172	1034.48889	-0.96749	-0.0005014	2.9467	0.0015271	1.9792	0.0010257	518.254267780947	79.391	0.91742	79.219	78.777	79.695	-0.17226					52	21	4	0	0	0	0.024374	1	9773	9773		32.812	6.1195	1	124430			14771	1957	10435	10454	16140	16140					-0.026978360602470275
EVCLKGLSM	9	Unmodified	_EVCLKGLSM_					0	0	0			REV__nc|ENSG00000073803|O43283-5|MAP3K13	REV__nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2533264160156	2	490.251188	978.487824	0.095223	4.6683E-05	4.242	0.0020796	4.3372	0.0021263	490.2533533819612	42.961	1.2683	42.992	42.431	43.7	0.030827					95	34	5	0	0	0	0.75397	1	3922	3922		42.396	1.8235	1	21653000	+		14772	20511	10436	10455	16141	16141					-0.0022805042915479135
EVDEYRRHWWR	11	Unmodified	_EVDEYRRHWWR_					0	0	0		ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN;nc|ENSG00000010072|Q9H040-3|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8474731445312	3	544.599046	1630.77531	-0.16734	-9.1133E-05	-2.3187	-0.0012627	-2.486	-0.0013539	544.5976194768109	20.721	0.92556	20.553	20.002	20.927	-0.16774					45	18	4	0	0	0	0.024879	1	613	613		5.4129	2.387	1	218790			14773	869	10437	10456	16142	16142					-0.014849422420638803
EVDILRKVS	9	Unmodified	_EVDILRKVS_					0	0	0		ENST00000467726.1_1_7:56154661-56156634:-|nuORF;ENSG00000164776|ENST00000297373|PHKG1;nc|ENSG00000164776|Q16816-2|PHKG1	ENST00000467726.1_1_7:56154661-56156634:-|nuORF	ENST00000467726.1_1_7:56154661-56156634:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7850341796875	2	529.813856	1057.61316	-0.87378	-0.00046294	0.93633	0.00049608	0.06255	3.314E-05	529.8143114923995	53.679	0.99306	53.532	53.239	54.232	-0.14724					56	27	4	0	0	0	0.024397	1	5763	5763		39.253	12.206	1	1552200			14774	7321	10438	10457	16143	16143					0.0866570102307378
EVDKSGPITL	10	Unmodified	_EVDKSGPITL_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3-2|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7850341796875	2	529.790047	1057.56554	-1.1221	-0.00059446	-0.60166	-0.00031875	-1.7237	-0.00091321	529.7904705923097	53.517	0.21759	53.37	53.239	53.456	-0.14723					7	5	2	0	0	0	0.03519	1	5763	5763		45.972	0	1	74494			14775	7425	10439	10458	16144	16144					0.03906002032226752
EVDLGYLII	9	Unmodified	_EVDLGYLII_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7939453125	2	517.792058	1033.56956	-0.22961	-0.00011889	3.5681	0.0018475	3.3385	0.0017287	517.793553449622	100.65	1.2028	100.65	100.04	101.24	0					48	28	2	0	0	0	0.80658	1	12910	12910		38.806	5.2906	1	337320			14776	5845	10440	10459	16145	16145					0.054120915259545654
EVDLLPQQS	9	Unmodified	_EVDLLPQQS_					0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2	REV__ENSG00000122512|ENST00000265849|PMS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8248901367188	2	514.766571	1027.51859	-1.2154	-0.00062565	0.83852	0.00043164	-0.37688	-0.00019401	514.7668368656695	40.088	0.5163	40.111	39.907	40.424	0.023006					18	13	2	0	0	0	0.024292	1	3432	3432		25.574	0	1	333160	+		14777	22649	10441	10460	16146	16146					0.005931424811024044
EVDPNEQL	8	Unmodified	_EVDPNEQL_					0	0	0		nc|ENSG00000120656|Q16514-2|TAF12;ENST00000471683.5_1_1:28916264-28944539:-|nuORF;ENSG00000120656|ENST00000373824|TAF12	nc|ENSG00000120656|Q16514-2|TAF12	nc|ENSG00000120656|Q16514-2|TAF12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.8045959472656	2	472.221997	942.429441	0.26116	0.00012333	0.89394	0.00042214	1.1551	0.00054547	472.22240682452076	55.969	1.1271	55.813	55.194	56.321	-0.15601					49	30	2	0	0	0	0.027866	1	6215	6215		58.782	9.3404	1	319330			14778	3827	10442	10461	16147	16147					-0.0440769247843491
EVDRLPLHG	9	Unmodified	_EVDRLPLHG_					0	0	0			REV__ENST00000520934.1_1_8:48873983-48874645:+|nuORF	REV__ENST00000520934.1_1_8:48873983-48874645:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.8109130859375	2	518.282723	1034.55089	-0.37799	-0.00019591	3.937	0.0020405	3.559	0.0018446	518.7848380244175	60.25	0.66788	60.25	59.914	60.582	0					23	17	2	0	0	0	0.024457	1	6975	6975		21.96	0	1	132400	+		14779	34306	10443	10462	16148	16148					0.03499974674764417
EVDSILLYI	9	Unmodified	_EVDSILLYI_					0	0	0			REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|30|1|anti-sense	REV__L1MB3_dup16438|chr20:32178164-32178792:-|2.1886942677619867|0.128195983415517|4.09|513.0|30|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.796875	2	532.79734	1063.58013	-0.045357	-2.4166E-05	0.045125	2.4042E-05	-0.00023249	-1.2387E-07	532.797169869545	100.63	0.68692	100.62	100.25	100.93	-0.0054474					36	16	3	0	0	0	0.40179	1	12785	12785		65.803	10.909	1	1041100	+		14780	36202	10444	10463	16149	16149					0.05088074180366675
EVEDNVKL	8	Unmodified	_EVEDNVKL_					0	0	0		ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	ENST00000415681.1_1_6:55804812-55805085:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2847900390625	2	473.248015	944.481476	-0.25433	-0.00012036	1.7294	0.00081843	1.4751	0.00069807	473.2487974654163	83.116	0.51144	83.143	82.831	83.342	0.02655					14	11	2	0	0	0	0.027866	1	10336	10336		79.451	0	1	65507			14781	13883	10445	10464	16150	16150					0.007014709353256876
EVEDVPLA	8	Unmodified	_EVEDVPLA_					0	0	0		TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant;nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.755126953125	2	436.224008	870.433463	1.9397	0.00084614	3.753	0.0016371	5.6926	0.0024833	436.22537972669124	23.226	0.27305	23.035	22.851	23.124	-0.19117					8	5	2	0	0	0	0.027866	1	858	858		33.516	9.0116	1	30490			14782	38054	10446	10465	16151	16151					-0.006936029847224745
EVEDVPLA	8	Unmodified	_EVEDVPLA_					0	0	0		TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant;nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.224008	870.433463	-0.11035	-4.8138E-05	5.9672	0.0026031	5.8569	0.0025549	436.2264933217895	23.067	0.27503	23.067	22.848	23.123	0	0.015751	0.0011162	NaN	33.516	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12454			14783	38054	10446	10465							-0.006936029847224745
EVEEPVVL	8	Unmodified	_EVEEPVVL_					0	0	0			REV__ENSG00000100221|ENST00000683374|JOSD1	REV__ENSG00000100221|ENST00000683374|JOSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.23553466796875	2	457.247483	912.480414	-0.64692	-0.0002958	-0.9731	-0.00044495	-1.62	-0.00074075	457.246313974062	22.461	0.17996	22.276	22.189	22.369	-0.18539					5	3	2	0	0	0	0.027866	1	779	779		26.796	0	1	15132	+		14784	21068	10447	10466	16152	16152					0.02067256566431297
EVEERKRL	8	Unmodified	_EVEERKRL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2817993164062	2	529.80128	1057.58801	-0.32512	-0.00017225	-2.13	-0.0011285	-2.4551	-0.0013007	529.7994545615285	62.022	0.51365	61.809	61.458	61.972	-0.21375					19	12	2	0	0	0	0.027866	1	6975	6975		38.806	0.99462	1	399730			14785	3658	10448	10467	16153	16153					0.06151646220519069
EVEESVDDP	9	Unmodified	_EVEESVDDP_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.7901611328125	2	509.714202	1017.41385	-0.25895	-0.00013199	1.2907	0.0006579	1.0318	0.00052591	509.71453997696847	60.825	0.38956	60.619	60.421	60.81	-0.20599					15	9	2	0	0	0	0.024205	1	6794	6794		53.351	0	1	72056	+		14786	24404	10449	10468	16154	16154					-0.09416023786127425
EVEFERIK	8	Unmodified	_EVEFERIK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2537841796875	2	525.284931	1048.55531	-0.43796	-0.00023005	-1.0267	-0.0005393	-1.4646	-0.00076936	525.2847534394584	45.122	0.86932	44.869	44.59	45.459	-0.25252					41	23	3	0	0	0	0.027866	1	4272	4272		31.955	9.995	1	796750	+		14787	26563	10450	10469	16155	16155					0.032974390976505674
EVEFERIK	8	Unmodified	_EVEFERIK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.284931	1048.55531	-1.3841	-0.00072702	0.89585	0.00047058	-0.48821	-0.00025645	525.2850619351724	44.751	0.89581	44.751	44.382	45.278	0	-0.074166	0.00058379	NaN	29.15	53	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	872590	+		14788	26563	10450	10469							0.032974390976505674
EVEFERIK	8	Unmodified	_EVEFERIK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.284931	1048.55531	-1.1358	-0.00059662	-0.36723	-0.0001929	-1.503	-0.00078952	525.284162854553	44.928	0.68975	44.779	44.39	45.079	-0.1488	-0.046114	-0.00074316	NaN	29.15	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802150	+		14789	26563	10450	10469							0.032974390976505674
EVEFERIK	8	Unmodified	_EVEFERIK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.284931	1048.55531	-0.13539	-7.1119E-05	-0.29433	-0.0001546	-0.42972	-0.00022572	525.284087534553	44.828	0.62897	44.865	44.509	45.138	0.0369	0.039375	-0.00066657	NaN	29.15	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	946640	+		14790	26563	10450	10469							0.032974390976505674
EVEFLKIL	8	Unmodified	_EVEFLKIL_					0	0	0		ENSG00000213186|ENST00000309784|TRIM59	ENSG00000213186|ENST00000309784|TRIM59	ENSG00000213186|ENST00000309784|TRIM59	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.7810363769531	2	495.797143	989.579734	-0.52461	-0.0002601	-2.1237	-0.0010529	-2.6483	-0.001313	495.7955320911882	28.856	1.2305	28.859	27.973	29.204	0.0031357					37	29	2	0	0	0	0.027866	1	1622	1622		44.117	24.12	1	106430			14791	10493	10451	10470	16156	16156					0.0845269925117691
EVEGLPLLI	9	Unmodified	_EVEGLPLLI_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.2971496582031	2	491.794601	981.574648	0.18124	8.9134E-05	2.3065	0.0011343	2.4878	0.0012235	491.7954877774719	47.616	1.6243	47.429	46.316	47.94	-0.18684					123	44	5	0	0	0	0.88411	1	4650	4650		33.516	1.5607	1	5640400			14792	6234	10452	10471	16157	16157					0.08312395388577443
EVEHKTVI	8	Unmodified	_EVEHKTVI_					0	0	0			REV__ENSG00000204311|ENST00000644580|PJVK	REV__ENSG00000204311|ENST00000644580|PJVK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.3005065917969	2	477.766374	953.518196	-0.48813	-0.00023321	1.5862	0.00075785	1.0981	0.00052464	477.76688314821547	33.037	0.56041	32.871	32.556	33.117	-0.16565					21	13	2	0	0	0	0.027866	1	2344	2344		49.442	12.282	1	169230	+		14793	28589	10453	10472	16158	16158					0.0395776755190127
EVEHLFLY	8	Unmodified	_EVEHLFLY_					0	0	0		ENST00000425348.1_1_X:53483765-53483951:-|nuORF	ENST00000425348.1_1_X:53483765-53483951:-|nuORF	ENST00000425348.1_1_X:53483765-53483951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2328491210938	2	525.26875	1048.52295	0.086718	4.555E-05	-3.4902	-0.0018333	-3.4034	-0.0017877	525.2668193729015	50.512	0.30035	50.232	50.031	50.332	-0.27977					12	7	2	0	0	0	0.027866	1	5124	5124		19.36	0	1	164350			14794	14064	10454	10473	16159	16159					0.0006265169467951637
EVEILGLMCV	10	Unmodified	_EVEILGLMCV_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000559119.1_1_15:62146658-62148655:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.813720703125	2	553.285228	1104.5559	-0.086432	-4.7822E-05	0.58466	0.00032348	0.49822	0.00027566	553.7874567661285	58.438	0.25368	58.259	58.145	58.399	-0.1789					6	5	2	0	0	0	0.03519	1	6433	6433		53.351	32.405	1	134100			14795	4326	10455	10474	16160	16160					0.007807744308593101
EVEILGLMCV	10	Unmodified	_EVEILGLMCV_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000559119.1_1_15:62146658-62148655:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.285228	1104.5559	-0.023048	-1.2752E-05	2.9521	0.0016334	2.9291	0.0016206	553.7878759369082	58.714	0.15124	58.527	58.424	58.575	-0.18705	0.13402	0.00075771	NaN	44.117	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71992			14796	4326	10455	10474							0.007807744308593101
EVEKATSVL	9	Unmodified	_EVEKATSVL_					0	0	0			REV__ENSG00000172716|ENST00000685675|SLFN11	REV__ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2710266113281	2	488.27149	974.528426	-0.21603	-0.00010548	0.070292	3.4322E-05	-0.14573	-7.1158E-05	488.2713734640091	24.203	0.68506	23.987	23.733	24.418	-0.2151					29	15	3	0	0	0	0.6504	1	1039	1039		49.442	5.3247	1	547030	+		14797	26698	10456	10475	16161	16161					0.040143304864727725
EVEKATSVL	9	Unmodified	_EVEKATSVL_					0	0	0			REV__ENSG00000172716|ENST00000685675|SLFN11	REV__ENSG00000172716|ENST00000685675|SLFN11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.27149	974.528426	-0.50793	-0.00024801	5.281	0.0025786	4.773	0.0023305	488.27390828143115	24.32	0.43273	24.32	23.908	24.341	0	0.16062	0.0045994	NaN	49.442	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136710	+		14798	26698	10456	10475							0.040143304864727725
EVEKATSVL	9	Unmodified	_EVEKATSVL_					0	0	0			REV__ENSG00000172716|ENST00000685675|SLFN11	REV__ENSG00000172716|ENST00000685675|SLFN11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.27149	974.528426	-0.26854	-0.00013112	3.3745	0.0016477	3.106	0.0015166	488.2732094169566	24.092	0.27121	24.17	24.048	24.319	0.078344	0.010965	0.0027377	NaN	49.442	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40371	+		14799	26698	10456	10475							0.040143304864727725
EVEKATSVL	9	Unmodified	_EVEKATSVL_					0	0	0			REV__ENSG00000172716|ENST00000685675|SLFN11	REV__ENSG00000172716|ENST00000685675|SLFN11	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	488.27149	974.528426	-0.21603	-0.00010548	0.070292	3.4322E-05	-0.14573	-7.1158E-05	488.2713734640091	24.203	0.68506	23.987	23.733	24.418	-0.2151	-0.17158	-0.00048907	NaN	49.442	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547030	+		14800	26698	10456	10475							0.040143304864727725
EVEKVKPQ	8	Unmodified	_EVEKVKPQ_					0	0	0		nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;GON4L|p.G1210Ifs*3|1|0.21|ENSG00000116580|chr1:155765843-155765846|GCCA/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1	nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869|YY1AP1	nc|ENSG00000163374|Q9H869|YY1AP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2902526855469	2	478.7742	955.533846	0.33764	0.00016165	0.05977	2.8616E-05	0.39741	0.00019027	478.77408299360854	67.755	0.96899	67.774	67.384	68.353	0.018921					61	24	4	0	0	0	0.027866	1	8048	8048		47.916	3.5384	1	2664800			14801	3556;18445	10457	10476	16162	16162					0.0543005406894963
EVEPERTK	8	Unmodified	_EVEPERTK_					0	0	0			REV__nc|nan|Q8ND61-2|C3orf20	REV__nc|nan|Q8ND61-2|C3orf20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7850036621094	2	494.258914	986.503274	0.33784	0.00016698	3.9482	0.0019515	4.2861	0.0021184	494.2600759410264	32.739	0.2397	32.547	32.417	32.657	-0.19261					8	5	2	0	0	0	0.027866	1	2279	2279		32.812	0	1	23294	+		14802	23204	10458	10477	16163	16163					0.009482756839020112
EVEPLVMSF	9	Unmodified	_EVEPLVMSF_					0	0	0			REV__ENSG00000066583|ENST00000173527|ISOC1	REV__ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2984619140625	2	525.762443	1049.51033	-1.5741	-0.00082761	0.035738	1.879E-05	-1.5384	-0.00080882	526.7672466451519	38.52	0.63397	38.52	38.199	38.833	0					32	16	3	0	0	0	0.024487	1	3236	3236		17.365	0	1	221540	+		14803	20339	10459	10478	16164	16164					-0.012441277598782108
EVERHFFEI	9	Unmodified	_EVERHFFEI_					0	0	0		ENSG00000172766|ENST00000379406|NAA16	ENSG00000172766|ENST00000379406|NAA16	ENSG00000172766|ENST00000379406|NAA16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5367431640625	3	402.536501	1204.58767	0.62353	0.00025099	-0.77347	-0.00031135	-0.14994	-6.0357E-05	402.5360161738049	35.154	4.3138	34.941	33.044	37.357	-0.21246					228	111	6	0	0	0	0.80003	1	2604	2604		39.253	0.49923	1	1567700			14804	8303	10460	10479	16165	16165					-0.006437734993369304
EVERHFFEI	9	Unmodified	_EVERHFFEI_					0	0	0		ENSG00000172766|ENST00000379406|NAA16	ENSG00000172766|ENST00000379406|NAA16	ENSG00000172766|ENST00000379406|NAA16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.53607177734375	3	402.536501	1204.58767	-0.5452	-0.00021946	0.37606	0.00015138	-0.16914	-6.8084E-05	402.5365975396167	32.657	1.0219	32.499	31.904	32.926	-0.15772					43	24	3	0	0	0	0.82115	1	2261	2261		37.812	1.3648	1	3691700			14805	8303	10460	10479	16166	16166					-0.006437734993369304
EVERITVIL	9	Unmodified	_EVERITVIL_					0	0	0			REV__nc|ENSG00000153930|Q8N957-2|ANKFN1	REV__nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7289428710938	2	536.324057	1070.63356	0.59783	0.00032063	-1.9182	-0.0010288	-1.3204	-0.00070815	536.3220347109169	59.543	0.71462	59.345	59.05	59.765	-0.19742					56	17	5	0	0	0	0.024523	1	6633	6633		21.96	0	1	1420500	+		14806	24919	10461	10480	16167	16167					0.10106871682887686
EVERKPKIT	9	Unmodified	_EVERKPKIT_					0	0	0		ENSG00000159173|ENST00000361379|TNNI1	ENSG00000159173|ENST00000361379|TNNI1	ENSG00000159173|ENST00000361379|TNNI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3262329101562	2	550.327131	1098.63971	-0.021848	-1.2023E-05	0.9288	0.00051114	0.90695	0.00049912	550.3277998075141	98.945	1.0124	98.945	98.479	99.492	0					46	22	3	0	0	0	0.91321	1	12672	12672		31.53	0	1	260500			14807	6725	10462	10481	16168	16168					0.09433389914420331
EVESVLVGAA	10	Unmodified	_EVESVLVGAA_					0	0	0		ENST00000471169.5_1_1:60139457-60228253:+|nuORF;ENST00000466791.5_1_1:60103921-60146476:+|nuORF;nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY	ENST00000471169.5_1_1:60139457-60228253:+|nuORF	ENST00000471169.5_1_1:60139457-60228253:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2819519042969	2	487.263665	972.512776	-0.049269	-2.4007E-05	-3.6957	-0.0018008	-3.745	-0.0018248	487.2618105634493	80.867	0.1172	80.629	80.569	80.686	-0.23784					4	2	2	0	0	0	0.03519	1	9699	9699		85.359	0.44396	1	24295			14808	8277	10463	10482	16169	16169					0.025420439694244124
EVEVEVKI	8	Unmodified	_EVEVEVKI_					0	0	0			REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2847900390625	2	472.768583	943.522613	-0.33457	-0.00015817	-1.1946	-0.00056478	-1.5292	-0.00072295	472.76625049362895	83.238	0.21107	83.265	83.173	83.384	0.026558					5	4	2	0	0	0	0.027866	1	10336	10336		58.782	5.4305	1	25779	+		14809	27877	10464	10483	16170	16170					0.04859231974819522
EVEVLFIDT	9	Unmodified	_EVEVLFIDT_					0	0	0		ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	ENSG00000196584|ENST00000359321|XRCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8026733398438	2	532.779148	1063.54374	-1.4594	-0.00077756	-3.6279	-0.0019329	-5.0874	-0.0027105	532.7764790079889	79.608	0.58679	79.436	79.15	79.737	-0.17226					18	13	2	0	0	0	0.024405	1	9835	9835		35.618	6.4687	1	66039			14810	9895	10465	10484	16171	16171					0.014511972836544373
EVEVRFIKV	9	Unmodified	_EVEVRFIKV_					0	0	0			REV__PCDHGA4|p.L148F|1|0.12|ENSG00000262576|chr5:141355551-141355551|G/T|missense_variant	REV__PCDHGA4|p.L148F|1|0.12|ENSG00000262576|chr5:141355551-141355551|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8316650390625	2	559.832049	1117.64954	-0.31677	-0.00017734	0.22238	0.0001245	-0.09439	-5.2842E-05	559.831966398586	78.812	1.3387	78.812	78.531	79.87	0					101	31	4	0	0	0	0.32811	1	9755	9755		71.877	3.0906	1	3102100	+		14811	37360	10466	10485	16172	16172					0.09542577919796713
EVEWQTYQG	9	Unmodified	_EVEWQTYQG_					0	0	0		ENST00000567441.5_3_15:43426167-43441319:+|nuORF;ENST00000570109.1_1_15:43426051-43427957:+|nuORF;ENSG00000137842|ENST00000260403|TMEM62	ENST00000567441.5_3_15:43426167-43441319:+|nuORF	ENST00000567441.5_3_15:43426167-43441319:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.3132934570312	2	570.253828	1138.4931	0.47172	0.000269	-1.5992	-0.00091195	-1.1275	-0.00064295	570.2527541316375	96.247	0.62313	96.11	95.767	96.391	-0.13671					22	14	2	0	0	0	0.024506	1	11884	11884		23.042	0	1	77528			14812	5167	10467	10486	16173	16173					-0.07060332041351103
EVEYFVAGT	9	Unmodified	_EVEYFVAGT_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;ENST00000503751.5_1_4:155468160-155471460:-|nuORF;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.74530029296875	2	507.742565	1013.47058	-0.42187	-0.0002142	-0.84205	-0.00042754	-1.2639	-0.00064174	508.2443944121881	81.873	0.41008	81.898	81.779	82.189	0.025719					16	9	2	0	0	0	0.024205	1	10135	10135		27.882	0	1	58502			14813	8173	10468	10487	16174	16174					-0.03561931438935062
EVFAFLLTN	9	Unmodified	_EVFAFLLTN_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3146362304688	2	527.2844	1052.55425	-0.31667	-0.00016698	-3.1476	-0.0016597	-3.4643	-0.0018267	527.2840518989154	74.763	0.44164	74.763	74.635	75.076	0					12	10	2	0	0	0	0.024495	1	9199	9199		26.693	14.486	1	60785	+		14814	21973	10469	10488	16175	16175					0.030072247287762366
EVFAFLLTN	9	Unmodified	_EVFAFLLTN_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.314208984375	2	527.2844	1052.55425	0.46237	0.0002438	-1.1498	-0.00060628	-0.68745	-0.00036248	527.2835059056215	74.874	0.49952	74.691	74.351	74.851	-0.18279					17	11	2	0	0	0	0.024427	1	8823	8823		26.693	6.6961	1	105940	+		14815	21973	10469	10488	16176	16176					0.030072247287762366
EVFAGVTT	8	Unmodified	_EVFAGVTT_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.7346496582031	2	412.213443	822.412334	1.0217	0.00042117	-1.6049	-0.00066156	-0.58316	-0.00024039	412.2131069490001	41.493	0.29214	41.493	41.396	41.688	0					13	7	3	0	0	0	0.027866	1	3731	3731		12.207	0	1	74015			14816	4121	10470	10489	16177	16177					-0.005975682935627447
EVFAGVTT	8	Unmodified	_EVFAGVTT_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	412.213443	822.412334	-0.038731	-1.5965E-05	1.4126	0.00058228	1.3738	0.00056632	412.2140164696998	41.694	0.25903	41.571	41.421	41.68	-0.12299	0.016616	0.00023004	NaN	12.207	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94576			14817	4121	10470	10489							-0.005975682935627447
EVFAGVTT	8	Unmodified	_EVFAGVTT_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	412.213443	822.412334	-0.29506	-0.00012163	1.9371	0.0007985	1.642	0.00067687	412.214069634207	41.832	0.26091	41.6	41.508	41.769	-0.23186	0.045148	0.00066247	NaN	12.207	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105960			14818	4121	10470	10489							-0.005975682935627447
EVFALCLWDSL	11	Unmodified	_EVFALCLWDSL_					0	0	0			REV__LYZL6|p.M123*|1|0.21|ENSG00000275722|chr17:35936766-35936766|C/-|frameshift_variant	REV__LYZL6|p.M123*|1|0.21|ENSG00000275722|chr17:35936766-35936766|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.2533874511719	3	432.54953	1294.62676	0.050265	2.1742E-05	-4.1268	-0.0017851	-4.0766	-0.0017633	432.54824570471027	31.518	0.21976	31.277	31.112	31.332	-0.24109					7	5	2	0	0	0	0.024751	1	2083	2083		27.644	0	1	55989	+		14819	29194	10471	10490	16178	16178					-0.008768092599893862
EVFAQLLDI	9	Unmodified	_EVFAQLLDI_					0	0	0			REV__ENSG00000158863|ENST00000289921|FHIP2B	REV__ENSG00000158863|ENST00000289921|FHIP2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2894897460938	2	524.289682	1046.56481	-0.49173	-0.00025781	-3.779	-0.0019813	-4.2707	-0.0022391	524.2876664873692	27.856	0.63232	27.611	27.289	27.922	-0.24499					38	14	3	0	0	0	0.1158	1	1560	1560		107.01	27.556	1	2651700	+		14820	25224	10472	10491	16179	16179					0.04339207383191024
EVFAQLLDI	9	Unmodified	_EVFAQLLDI_					0	0	0			REV__ENSG00000158863|ENST00000289921|FHIP2B	REV__ENSG00000158863|ENST00000289921|FHIP2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	524.289682	1046.56481	-0.76442	-0.00040078	-3.4083	-0.001787	-4.1728	-0.0021877	524.2878889370006	27.676	0.6178	27.508	27.23	27.847	-0.16816					38	14	3	0	0	0	0.15366	2	1542	1531;1542		98.629	7.8527	1	2805700	+		14821	25224	10472	10491	16180;16181	16181					0.04339207383191024
EVFAQLLDI	9	Unmodified	_EVFAQLLDI_					0	0	0			REV__ENSG00000158863|ENST00000289921|FHIP2B	REV__ENSG00000158863|ENST00000289921|FHIP2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2882690429688	2	524.289682	1046.56481	-0.16834	-8.826E-05	-4.1414	-0.0021713	-4.3098	-0.0022596	524.2874855521978	27.778	0.64907	27.622	27.307	27.956	-0.15664					38	15	3	0	0	0	0.15366	1	1525	1525		98.629	13.714	1	2822900	+		14822	25224	10472	10491	16182	16182					0.04339207383191024
EVFEQTLAR	9	Unmodified	_EVFEQTLAR_					0	0	0			REV__ENSG00000184735|ENST00000327968|DDX53	REV__ENSG00000184735|ENST00000327968|DDX53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.303466796875	2	546.787838	1091.56112	-1.4787	-0.00080855	3.9462	0.0021577	2.4674	0.0013492	546.789901810761	37.692	0.61142	37.473	37.144	37.755	-0.21848					29	15	3	0	0	0	0.024438	1	2988	2988		22.58	2.5829	1	382960	+		14823	27698	10473	10492	16183	16183					0.019005376093446102
EVFGHIIV	8	Unmodified	_EVFGHIIV_					0	0	0			REV__nc|ENSG00000111731|Q86YS7|C2CD5	REV__nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.28936767578125	2	457.260728	912.506903	-0.9819	-0.00044898	2.1599	0.00098763	1.178	0.00053864	457.261903845107	93.703	0.30309	93.563	93.441	93.744	-0.13995					9	6	2	0	0	0	0.027866	1	11515	11515		46.766	9.6073	1	32287	+		14824	21943	10474	10493	16184	16184					0.04714990248430695
EVFHLLNE	8	Unmodified	_EVFHLLNE_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant;REV__ENSG00000164080|ENST00000684192|RAD54L2	REV__ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7870788574219	2	500.758549	999.502546	-1.7127	-0.00085763	1.7643	0.00088348	0.051609	2.5844E-05	501.26231831192337	60.227	0.22763	60.306	60.165	60.392	0.078888					7	5	2	0	0	0	0.027866	1	6842	6842		45.952	10.334	1	128620	+		14825	37425;25688	10475	10494	16185	16185					0.002774810348682877
EVFIIGCLIN	10	Unmodified	_EVFIIGCLIN_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.307373046875	2	560.807185	1119.59982	-0.55149	-0.00030928	-2.0271	-0.0011368	-2.5786	-0.0014461	561.307865697096	69.206	0.64594	69.222	68.9	69.546	0.015121					29	16	2	0	0	0	0.64538	1	8271	8271		71.877	4.3838	1	4244600	+		14826	21142	10476	10495	16186	16186					0.04480126919497707
EVFLPNSN	8	Unmodified	_EVFLPNSN_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.26361083984375	2	460.229625	918.444697	-0.098451	-4.531E-05	4.0493	0.0018636	3.9508	0.0018183	460.2297068873169	42.165	0.49049	41.935	41.725	42.216	-0.23029					35	13	4	0	0	0	0.027866	1	3749	3749		42.396	14.514	1	479520			14827	5414	10477	10496	16187	16187					-0.01778780890560938
EVFLRVGKL	9	Unmodified	_EVFLRVGKL_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2970581054688	2	530.829309	1059.64407	-0.34693	-0.00018416	2.4394	0.0012949	2.0925	0.0011108	531.3345453151147	65.926	0.36633	65.653	65.43	65.796	-0.27282					22	9	3	0	0	0	0.024374	1	7805	7805		40.778	0	1	141680			14828	7759	10478	10497	16188	16188					0.11662899127986748
EVFNCLDQL	9	Unmodified	_EVFNCLDQL_					0	0	0		ENST00000420584.3_1_6:34846019-34846193:-|nuORF	ENST00000420584.3_1_6:34846019-34846193:-|nuORF	ENST00000420584.3_1_6:34846019-34846193:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.297607421875	2	540.755149	1079.49575	0.46251	0.0002501	0.20484	0.00011077	0.66735	0.00036087	540.7552159503447	63.057	1.8959	63.111	62.599	64.495	0.054104					77	50	2	0	0	0	0.02366	1	7449	7449		72.879	8.672	1	321910			14829	13976	10479	10498	16189	16189					-0.040821999080208116
EVFNQFLVV	9	Unmodified	_EVFNQFLVV_					0	0	0		KIF9|p.R426L|1|0.21|ENSG00000088727|chr3:47246209-47246209|C/A|missense_variant	KIF9|p.R426L|1|0.21|ENSG00000088727|chr3:47246209-47246209|C/A|missense_variant	KIF9|p.R426L|1|0.21|ENSG00000088727|chr3:47246209-47246209|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3349609375	2	547.797675	1093.5808	-1.1214	-0.00061429	-2.692	-0.0014747	-3.8134	-0.002089	547.7958109785475	29.633	0.52931	29.636	29.427	29.956	0.0031376					26	12	3	0	0	0	0.024487	1	1808	1808		17.365	0	1	184050			14830	17802	10480	10499	16190	16190					0.03774913620100051
EVFPAQHPPPS	11	Unmodified	_EVFPAQHPPPS_					0	0	0		nc|ENSG00000009790|Q9Y228-3|TRAF3IP3;nc|ENSG00000009790|Q9Y228-2|TRAF3IP3;ENSG00000009790|ENST00000367025|TRAF3IP3	nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5365295410156	3	402.536501	1204.58767	1.2683	0.00051055	-1.3022	-0.00052418	-0.033858	-1.3629E-05	402.5359425443809	32.762	0.85808	32.57	32.205	33.063	-0.19261					44	20	3	0	0	0	0.95317	1	2263	2263		47.228	4.8896	1	3249000			14831	863	10481	10500	16191	16191					-0.006437734993369304
EVFQRLVI	8	Unmodified	_EVFQRLVI_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2671813964844	2	502.300384	1002.58622	0.094779	4.7607E-05	-0.67447	-0.00033879	-0.57969	-0.00029118	502.2998090419583	71.045	0.7404	71.055	70.769	71.509	0.010735					26	18	2	0	0	0	0.027866	1	8574	8574		42.474	0	1	461100			14832	4246	10482	10501	16192	16192					0.08502637202559526
EVFQTELAI	9	Unmodified	_EVFQTELAI_					0	0	0			REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2784423828125	2	525.279315	1048.54408	0.0854	4.4859E-05	-0.44266	-0.00023252	-0.35726	-0.00018766	525.2790783645091	87.196	1.9661	87.058	86.224	88.19	-0.13734					117	46	4	0	0	0	0.024511	1	10504	10504		32.812	0	1	7037800	+		14833	19435	10483	10502	16193	16193					0.021746170035157775
EVFRQHRGP	9	Unmodified	_EVFRQHRGP_					0	0	0		ENSG00000114631|ENST00000342480|PODXL2	ENSG00000114631|ENST00000342480|PODXL2	ENSG00000114631|ENST00000342480|PODXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.7319946289062	2	563.299239	1124.58392	-0.84467	-0.0004758	0.0036172	2.0375E-06	-0.84105	-0.00047376	563.2989119698533	51.576	0.49867	51.299	51.042	51.54	-0.27643					21	12	3	0	0	0	0.024405	1	5333	5333		27.882	0	1	219280			14834	3371	10484	10503	16194	16194					0.02661601517456802
EVFRVEGIK	9	Unmodified	_EVFRVEGIK_					0	0	0		IFI44L|p.N215Qfs*20|1|0.24|ENSG00000137959|chr1:78629827-78629828|-/T|frameshift_variant;ENSG00000137959|ENST00000370751|IFI44L	IFI44L|p.N215Qfs*20|1|0.24|ENSG00000137959|chr1:78629827-78629828|-/T|frameshift_variant	IFI44L|p.N215Qfs*20|1|0.24|ENSG00000137959|chr1:78629827-78629828|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2642822265625	2	538.808574	1075.60259	-0.95315	-0.00051356	1.4435	0.00077777	0.49035	0.00026421	538.8092658192965	69.503	0.74393	69.281	68.978	69.722	-0.22245					25	17	2	0	0	0	0.0242	1	8060	8060		42.864	0	1	318960			14835	5181	10485	10504	16195	16195					0.06781718368665679
EVFTALNQITK	11	Unmodified	_EVFTALNQITK_					0	0	0			REV__ENSG00000114771|ENST00000232892|AADAC	REV__ENSG00000114771|ENST00000232892|AADAC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.5205078125	3	421.902961	1262.68705	-0.10661	-4.4977E-05	1.2411	0.0005236	1.1344	0.00047863	421.90335854998733	31.873	0.75519	31.716	31.489	32.245	-0.15772					37	17	3	0	0	0	0.024734	1	2125	2125		10.145	0.39945	1	468510	+		14836	22143	10486	10505	16196	16196					0.06621624394733772
EVFTLRVLV	9	Unmodified	_EVFTLRVLV_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3285522460938	2	538.329142	1074.64373	-0.27569	-0.00014841	-0.2241	-0.00012064	-0.49979	-0.00026905	538.3288020126681	81.973	0.97226	81.863	81.237	82.21	-0.11006					62	23	4	0	0	0	0.39228	1	10195	10195		66.429	8.618	1	1343800			14837	624	10487	10506	16197	16197					0.10939479408125408
EVFVPTKPE	9	Unmodified	_EVFVPTKPE_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2997436523438	2	523.281857	1044.54916	-0.62334	-0.00032618	-0.68579	-0.00035886	-1.3091	-0.00068505	523.2812430754968	76.481	0.24691	76.481	76.391	76.637	0					7	5	2	0	0	0	0.024405	1	9436	9436		35.618	6.4687	1	55053			14838	1103	10488	10507	16198	16198					0.028669208661540324
EVGDNDLVY	9	Unmodified	_EVGDNDLVY_					0	0	0		ENSG00000169783|ENST00000355300|LINGO1;nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000174482|ENST00000698399|LINGO2	ENSG00000169783|ENST00000355300|LINGO1;ENSG00000174482|ENST00000698399|LINGO2	ENSG00000169783|ENST00000355300|LINGO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2360229492188	2	512.235104	1022.45566	-0.63755	-0.00032658	0.4215	0.00021591	-0.21605	-0.00011067	512.2353058066367	57.638	0.72484	57.405	57.129	57.854	-0.23363					45	18	4	0	0	0	0.72875	1	6288	6288		44.117	3.3386	1	3670800			14839	7976;8472	10489	10508	16199	16199					-0.05467423306959063
EVGGAGQRG	9	Unmodified	_EVGGAGQRG_					0	0	0		ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	ENSG00000164236|ENST00000296657|ANKRD33B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.70989990234375	2	415.709391	829.404229	-0.83536	-0.00034727	0.90737	0.0003772	0.072001	2.9931E-05	415.7097107306702	26.257	2.915	26.021	25.803	28.718	-0.23603					131	72	3	0	0	0	0.98128	1	1327	1327		24.203	0	1	12481000			14840	7243	10490	10509	16200	16200					-0.017297024903427882
EVGLIFKEK	9	Unmodified	_EVGLIFKEK_					0	0	0			REV__nc|ENSG00000069206|Q9H2U9-2|ADAM7	REV__nc|ENSG00000069206|Q9H2U9-2|ADAM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2925415039062	2	531.813325	1061.6121	-0.90387	-0.00048069	-0.66836	-0.00035544	-1.5722	-0.00083613	531.8127828158283	31.108	0.90643	30.923	30.533	31.44	-0.18503					54	22	4	0	0	0	0.02435	1	2005	2005		51.335	0	1	1586800	+		14841	20399	10491	10510	16201	16201					0.08375486654176711
EVGLLAALLV	10	Unmodified	_EVGLLAALLV_					0	0	0			REV__ENSG00000160932|ENST00000292494|LY6E	REV__ENSG00000160932|ENST00000292494|LY6E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.30731201171875	2	499.318243	996.621933	-0.5273	-0.00026329	0.18568	9.2715E-05	-0.34161	-0.00017057	499.31824624492623	96.582	0.60821	96.425	96.214	96.822	-0.15646					30	13	3	0	0	0	0.03519	1	11935	11935		23.042	0	1	199340	+		14842	25361	10492	10511	16202	16202					0.1234867465956313
EVGLSLLRS	9	Unmodified	_EVGLSLLRS_					0	0	0		ENST00000525763.5_1_11:33719939-33731456:-|nuORF	ENST00000525763.5_1_11:33719939-33731456:-|nuORF	ENST00000525763.5_1_11:33719939-33731456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.28814697265625	2	487.287474	972.560395	0.091122	4.4403E-05	-0.584	-0.00028458	-0.49288	-0.00024017	487.28711097165416	38.689	0.76622	38.463	38.143	38.909	-0.2257					53	20	4	0	0	0	0.39228	1	3223	3223		66.429	0	1	5171100			14843	16101	10493	10512	16203	16203					0.07301742960282809
EVGRIECHV	9	Unmodified	_EVGRIECHV_					0	0	0		ENST00000554334.5_1_14:65482315-65499209:+|nuORF	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.2592163085938	2	521.260933	1040.50731	0.45272	0.00023598	-4.4686	-0.0023293	-4.0158	-0.0020933	521.2585387983826	85.172	1.38	85.172	84.834	86.214	0					87	32	5	0	0	0	0.53979	1	10660	10660		56.721	0	1	8088000			14844	16654	10494	10513	16204	16204					-0.011319580940380547
EVGRPHVW	8	Unmodified	_EVGRPHVW_					0	0	0			REV__nc|ENSG00000149541|O94766-2|B3GAT3	REV__nc|ENSG00000149541|O94766-2|B3GAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7923583984375	2	490.259051	978.503549	-0.8574	-0.00042035	-2.6044	-0.0012768	-3.4618	-0.0016972	490.25745560838425	37.717	0.33757	37.497	37.35	37.688	-0.2195					12	8	2	0	0	0	0.027866	1	3043	3043		20.482	6.3447	1	122020	+		14845	24686	10495	10514	16205	16205					0.013437401944202065
EVGYAVNLI	9	Unmodified	_EVGYAVNLI_					0	0	0			REV__ENSG00000162999|ENST00000354221|DUSP19	REV__ENSG00000162999|ENST00000354221|DUSP19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.25823974609375	2	489.26875	976.522947	-0.1538	-7.5247E-05	-0.46311	-0.00022659	-0.61691	-0.00030183	489.2683497973253	75.271	0.60118	75.281	74.973	75.574	0.010376					25	15	2	0	0	0	0.024487	1	9122	9122		40.573	24.099	1	543170	+		14846	25519	10496	10515	16206	16206					0.03374651694673503
EVHLQRRL	8	Unmodified	_EVHLQRRL_					0	0	0			REV__ENSG00000160447|ENST00000291906|PKN3	REV__ENSG00000160447|ENST00000291906|PKN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2977905273438	2	525.811982	1049.60941	-0.38328	-0.00020153	2.1959	0.0011546	1.8127	0.00095312	525.8135445713336	55.114	0.44462	55.114	54.908	55.353	0					28	12	3	0	0	0	0.027866	1	6075	6075		30.504	0	1	508460	+		14847	25322	10497	10516	16207	16207					0.08659076039884894
EVHPARSIV	9	Unmodified	_EVHPARSIV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7511291503906	2	504.285266	1006.55598	-0.0041011	-2.0681E-06	1.4898	0.0007513	1.4857	0.00074923	504.2860747786632	34.123	0.26709	33.899	33.803	34.07	-0.22412					8	6	2	0	0	0	0.024427	1	2476	2476		42.396	0	1	39666			14848	5591	10498	10517	16208	16208					0.05296278537366561
EVHQAVIL	8	Unmodified	_EVHQAVIL_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7456359863281	2	454.763635	907.512717	0.24032	0.00010929	-0.71496	-0.00032514	-0.47464	-0.00021585	454.7630736492747	54.334	0.38738	54.187	53.954	54.342	-0.14723					15	10	2	0	0	0	0.027866	1	5879	5879		65.803	15.779	1	169770	+		14849	24351	10499	10518	16209	16209					0.055260887600866226
EVHQDLNAL	9	Unmodified	_EVHQDLNAL_					0	0	0		ENSG00000141026|ENST00000268711|MED9	ENSG00000141026|ENST00000268711|MED9	ENSG00000141026|ENST00000268711|MED9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3270263671875	2	519.764363	1037.51417	0.15381	7.9944E-05	2.6972	0.0014019	2.851	0.0014818	519.7657493653629	69.102	0.3372	68.809	68.673	69.01	-0.29267					12	8	2	0	0	0	0.023417	1	8265	8265		90.777	8.5361	1	125380			14850	5464	10500	10519	16210	16210					-0.0030832194181584782
EVHRHTAL	8	Unmodified	_EVHRHTAL_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.7615661621094	2	481.761958	961.509363	0.93395	0.00044994	-1.1871	-0.00057192	-0.25319	-0.00012198	481.7613264082382	18.927	0.59388	18.77	18.544	19.138	-0.1567					25	11	4	0	0	0	0.6536	1	362	362		71.296	32.49	1	310550			14851	1957	10501	10520	16211	16211					0.027068387060694477
EVHRKHIM	8	Unmodified	_EVHRKHIM_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.287109375	2	525.287285	1048.56002	0.23805	0.00012504	-0.32961	-0.00017314	-0.091562	-4.8096E-05	525.2869713887604	18.639	0.74148	18.435	18.163	18.904	-0.20371					39	14	4	0	0	0	0.71833	1	321	321		65.803	0	1	604300			14852	3922;14252	10502	10521	16212	16212					0.03768044759431177
EVHRKHIM	8	Unmodified	_EVHRKHIM_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENSG00000122406|ENST00000370321|RPL5;ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.287353515625	2	525.287285	1048.56002	2.8641	0.0015045	-2.9303	-0.0015393	-0.066244	-3.4797E-05	525.2856038175687	18.642	0.79388	18.399	18.175	18.968	-0.24256					30	15	3	0	0	0	0.50239	1	293	293		85.359	19.556	1	540020			14853	3922;14252	10502	10521	16213	16213					0.03768044759431177
EVHSAAVRS	9	Unmodified	_EVHSAAVRS_					0	0	0		ENST00000284000.8_1_19:33873367-33873568:+|nuORF	ENST00000284000.8_1_19:33873367-33873568:+|nuORF	ENST00000284000.8_1_19:33873367-33873568:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.25494384765625	2	478.251423	954.488293	5.5168	0.0026384	2.3623	0.0011298	7.8791	0.0037682	478.2524139154761	16.992	0.22551	16.741	16.61	16.835	-0.25049					8	5	2	0	0	0	0.99229	1	106	106		21.96	1.4781	1	39663			14854	11743	10503	10522	16214	16214					0.009228286065649627
EVHSLMGGGV	10	Unmodified	_EVHSLMGGGV_					0	0	0		ENSG00000103742|ENST00000352385|IGDCC4;ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENST00000560319.1_1_15:65678132-65678348:-|nuORF;ENST00000561309.1_1_15:65677198-65678348:-|nuORF	ENSG00000103742|ENST00000352385|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2784118652344	2	493.242209	984.469866	-0.34257	-0.00016897	1.1033	0.00054419	0.76073	0.00037522	493.24239025581625	20.444	0.44453	20.276	20.049	20.494	-0.16774					11	8	2	0	0	0	0.03519	1	527	527		49.442	13.823	1	18968			14855	2527	10504	10523	16215	16215					-0.02299049359635319
EVIEKLLKD	9	Unmodified	_EVIEKLLKD_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8475341796875	2	543.823889	1085.63323	0.22549	0.00012263	1.5045	0.00081818	1.73	0.00094081	543.8245906075657	20.972	0.49094	20.777	20.582	21.073	-0.19577					12	9	2	0	0	0	0.024313	1	609	609		69.628	6.3214	1	15444			14856	4657	10505	10524	16216	16216					0.09383451963049083
EVIEKWIK	8	Unmodified	_EVIEKWIK_					0	0	0			REV__nc|ENSG00000152270|Q13370-2|PDE3B	REV__nc|ENSG00000152270|Q13370-2|PDE3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2992553710938	2	522.808042	1043.60153	-1.0843	-0.00056687	2.3266	0.0012164	1.2423	0.00064951	522.8084437543412	51.722	0.50399	51.809	51.61	52.114	0.087006					16	13	2	0	0	0	0.027866	1	5470	5470		63.306	19.189	1	1221800	+		14857	24831	10506	10525	16217	16217					0.08147503999748551
EVIERAVRE	9	Unmodified	_EVIERAVRE_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8063354492188	2	550.806562	1099.59857	-0.73276	-0.00040361	0.37319	0.00020555	-0.35957	-0.00019806	550.8066639785604	38.659	0.73965	38.438	38.153	38.892	-0.22149					50	19	4	0	0	0	0.1158	1	3202	3202		107.01	2.9507	1	2460300	+		14858	20890	10507	10526	16218	16218					0.052756288749378655
EVIGFYFAL	9	Unmodified	_EVIGFYFAL_					0	0	0		ENSG00000205329|ENST00000641740|OR6C3	ENSG00000205329|ENST00000641740|OR6C3	ENSG00000205329|ENST00000641740|OR6C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8141479492188	2	529.781493	1057.54843	-0.064538	-3.4191E-05	-1.4263	-0.00075561	-1.4908	-0.0007898	529.7807151086454	80.618	0.57217	80.472	80.241	80.813	-0.146					21	13	2	0	0	0	0.024293	1	9640	9640		42.474	0	1	108390			14859	10418	10508	10527	16219	16219					0.021961262170862028
EVIGHLETMID	11	Unmodified	_EVIGHLETMID_					0	0	0		ENSG00000196344|ENST00000437033|ADH7;nc|ENSG00000196344|P40394|ADH7;nc|ENSG00000196344|P40394-2|ADH7	ENSG00000196344|ENST00000437033|ADH7	ENSG00000196344|ENST00000437033|ADH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.52166748046875	3	419.544556	1255.61184	2.0073	0.00084216	1.6098	0.00067537	3.6171	0.0015175	419.54514397392444	24.822	0.43759	24.648	24.424	24.862	-0.17459					21	9	3	0	0	0	0.024759	1	1087	1087		17.833	11.174	1	147860			14860	9853	10509	10528	16220	16220					-0.005743011279946586
EVIHIRLEE	9	Unmodified	_EVIHIRLEE_					0	0	0		nc|ENSG00000137962|Q52LW3-2|ARHGAP29;ENSG00000137962|ENST00000260526|ARHGAP29	nc|ENSG00000137962|Q52LW3-2|ARHGAP29	nc|ENSG00000137962|Q52LW3-2|ARHGAP29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.283935546875	2	569.316763	1136.61897	-0.38156	-0.00021723	-1.0774	-0.00061336	-1.4589	-0.00083059	569.3160826087135	81.419	0.37299	81.277	80.984	81.357	-0.14249					13	8	3	0	0	0	0.024477	1	9780	9780		27.882	1.1893	1	85563			14861	5183	10510	10529	16221	16221					0.056127995347424076
EVIKESVPP	9	Unmodified	_EVIKESVPP_					0	0	0		STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8031311035156	2	499.281857	996.549162	0.29376	0.00014667	-0.41018	-0.0002048	-0.11642	-5.8127E-05	499.2809222854936	52.454	0.81497	52.306	52.17	52.985	-0.14723					27	20	2	0	0	0	0.023454	1	5666	5666		62.107	5.3864	1	338870			14862	37973	10511	10530	16222	16222					0.05074920866138655
EVIKESVPP	9	Unmodified	_EVIKESVPP_					0	0	0		STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	499.281857	996.549162	-0.058443	-2.9179E-05	-0.50473	-0.000252	-0.56318	-0.00028118	499.2807308707235	52.388	0.62923	52.388	52.198	52.827	0	0.047379	-0.00094485	NaN	62.107	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377780			14863	37973	10511	10530							0.05074920866138655
EVIKESVPP	9	Unmodified	_EVIKESVPP_					0	0	0		STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	STAU2|p.G232V|1|0.15|ENSG00000040341|chr8:73613940-73613940|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.281857	996.549162	-0.4314	-0.00021539	0.46896	0.00023414	0.037554	1.875E-05	499.2815959097621	52.523	0.5177	52.333	51.993	52.51	-0.18982	-0.008189	2.744E-05	NaN	62.107	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121790			14864	37973	10511	10530							0.05074920866138655
EVIKLLLSV	9	Unmodified	_EVIKLLLSV_					0	0	0		ENST00000507897.5_1_6:88187111-88205805:+|nuORF;ENST00000506888.5_1_6:88187111-88216600:+|nuORF;nc|ENSG00000164414|P78382-2|SLC35A1;ENSG00000164414|ENST00000369552|SLC35A1	ENST00000507897.5_1_6:88187111-88205805:+|nuORF	ENST00000507897.5_1_6:88187111-88205805:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.33349609375	2	507.333893	1012.65323	0.21162	0.00010736	-0.89586	-0.0004545	-0.68425	-0.00034714	507.33319773255397	80.419	1.7667	80.182	79.789	81.555	-0.23784					94	42	4	0	0	0	0.22902	1	9644	9644		85.161	13.283	1	2692800			14865	7276	10512	10531	16223	16223					0.14741247693666537
EVIKTALSL	9	Unmodified	_EVIKTALSL_					0	0	0			REV__ENSG00000163491|ENST00000691995|NEK10	REV__ENSG00000163491|ENST00000691995|NEK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7740478515625	2	487.30005	972.585547	-0.042041	-2.0487E-05	0.036507	1.779E-05	-0.0055347	-2.6971E-06	487.300009266153	55.993	0.70973	55.993	55.715	56.424	0					27	19	2	0	0	0	0.024367	1	6208	6208		36.447	0	1	205550	+		14866	25574	10513	10532	16224	16224					0.09815797762848888
EVIKTAVVD	9	Unmodified	_EVIKTAVVD_					0	0	0			REV__ENST00000435327.2_1_3:42791351-42799837:-|nuORF	REV__ENST00000435327.2_1_3:42791351-42799837:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2884826660156	2	487.281857	972.549162	0.090375	4.4038E-05	-1.7085	-0.00083251	-1.6181	-0.00078847	487.280776109263	58.634	0.51778	58.447	58.24	58.758	-0.18705					25	13	3	0	0	0	0.023417	1	6648	6648		68.787	0	1	206450	+		14867	29001	10514	10533	16225	16225					0.0617892086613665
EVILYMINL	9	Unmodified	_EVILYMINL_					0	0	0			REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF;REV__ENST00000473429.5_1_1:110584140-110584332:+|nuORF	REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	554.3072509765625	2	554.309561	1106.60457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.78	1	100.78	100.28	101.28	0								0	0	0	0.51175	1	12896	12896		51.335	3.4199	1		+		14868	24197;33235	10515	10534	16226	16226					0.05553011062261248
EVIMKGNINN	10	Unmodified	_EVIMKGNINN_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.3141479492188	2	566.294973	1130.57539	-1.1721	-0.00066375	-1.3974	-0.00079134	-2.5695	-0.0014551	566.2941189341219	36.609	0.47534	36.647	36.409	36.884	0.03804					25	12	3	0	0	0	0.03519	1	2836	2836		34.173	14.176	1	166410			14869	8178	10516	10535	16227	16227					0.015328667659787243
EVININLKN	9	Unmodified	_EVININLKN_					0	0	0		nc|ENSG00000148834|P78417-2|GSTO1;nc|ENSG00000148834|P78417-3|GSTO1;ENSG00000148834|ENST00000369713|GSTO1	nc|ENSG00000148834|P78417-2|GSTO1	nc|ENSG00000148834|P78417-2|GSTO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7953491210938	2	528.806031	1055.59751	1.2424	0.00065701	-1.9052	-0.0010075	-0.66274	-0.00035046	528.804922283611	63.227	0.68194	63.281	62.801	63.483	0.054104					40	17	3	0	0	0	0.024263	1	7266	7266		60.972	13.315	1	1490600			14870	6052	10517	10536	16228	16228					0.07193414506036788
EVINSFLTDA	10	Unmodified	_EVINSFLTDA_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.3243408203125	2	554.779679	1107.5448	0.22914	0.00012712	-0.95493	-0.00052978	-0.72579	-0.00040265	554.778618051952	50.792	0.70555	50.516	50.035	50.74	-0.27643					24	18	2	0	0	0	0.03519	1	5187	5187		82.75	18.543	1	743740			14871	7852	10518	10537	16229	16229					-0.00466588347421748
EVIPDPAKQTD	11	Unmodified	_EVIPDPAKQTD_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	605.8554077148438	2	606.808968	1211.60338	-0.37397	-0.00022693	-4.2025	-0.0025501	-4.5764	-0.002777	606.8059696503083	81.9	1.0912	81.671	80.857	81.948	-0.2289					32	25	2	0	0	0	0.024787	1	9862	9862		49.536	0	1	116240			14872	6303	10519	10538	16230	16230					0.006044682270612611
EVIPILEVQ	9	Unmodified	_EVIPILEVQ_					0	0	0		nc|ENSG00000143740|Q5SQN1-3|SNAP47;nc|ENSG00000143740|Q5SQN1-4|SNAP47;ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1-2|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47	nc|ENSG00000143740|Q5SQN1-3|SNAP47	nc|ENSG00000143740|Q5SQN1-3|SNAP47	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3049926757812	2	520.305332	1038.59611	-0.69967	-0.00036404	0.29519	0.00015359	-0.40448	-0.00021045	520.3054938297144	93.614	1.9055	93.62	92.501	94.406	0.0059814					101	45	5	0	0	0	0.37611	1	11812	11812		67.494	0	1	6622100			14873	5681	10520	10539	16231	16231					0.07835780417281057
EVISASVLI	9	Unmodified	_EVISASVLI_					0	0	0		ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.8041687011719	2	465.778951	929.543348	-0.73876	-0.0003441	-3.7194	-0.0017324	-4.4582	-0.0020765	465.7770795983562	83.874	0.52056	83.874	83.779	84.3	0					20	11	2	0	0	0	0.024294	1	10536	10536		65.803	0	1	280140			14874	14102	10521	10540	16232	16232					0.07575822354476713
EVISASVLI	9	Unmodified	_EVISASVLI_					0	0	0		ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.778951	929.543348	0.64195	0.00029901	-3.3391	-0.0015553	-2.6971	-0.0012563	465.7772492542942	84.176	1.2318	83.973	83.608	84.84	-0.20329	-0.0021623	7.8576E-05	NaN	45.952	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253330			14875	14102	10521	10540							0.07575822354476713
EVISASVLI	9	Unmodified	_EVISASVLI_					0	0	0		ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.778951	929.543348	0.72452	0.00033747	-3.5403	-0.001649	-2.8157	-0.0013115	465.77717427524505	84.211	1.4782	84.053	83.42	84.898	-0.15869	0.077522	-0.00010881	NaN	45.952	63	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276510			14876	14102	10521	10540							0.07575822354476713
EVISASVLI	9	Unmodified	_EVISASVLI_					0	0	0		ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.778951	929.543348	0.28107	0.00013092	-3.0315	-0.001412	-2.7505	-0.0012811	465.77748628059396	84.188	1.2783	84.05	83.629	84.908	-0.13789	0.075014	0.0003651	NaN	45.952	63	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193640			14877	14102	10521	10540							0.07575822354476713
EVISVNDECL	10	Unmodified	_EVISVNDECL_					0	0	0			REV__ENST00000418919.6_1_12:65115387-65115435:-|nuORF	REV__ENST00000418919.6_1_12:65115387-65115435:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.311279296875	2	560.763171	1119.51179	-1.8889	-0.0010592	3.57	0.0020019	1.6812	0.00094273	560.7629142553328	51.976	0.17593	51.707	51.584	51.76	-0.26903					5	4	2	0	0	0	0.03519	1	5362	5362		30.318	6.115	1	43512	+		14878	32132	10522	10541	16233	16233					-0.04318538461780008
EVISYKIR	8	Unmodified	_EVISYKIR_					0	0	0		ENST00000555311.1_1_14:31578566-31578662:-|nuORF	ENST00000555311.1_1_14:31578566-31578662:-|nuORF	ENST00000555311.1_1_14:31578566-31578662:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.2383728027344	2	504.297842	1006.58113	-0.17249	-8.6985E-05	-0.38832	-0.00019583	-0.56081	-0.00028282	504.2975525561427	63.531	1.5482	63.28	62.439	63.987	-0.25141					81	40	3	0	0	0	0.027866	1	7442	7442		19.104	0	1	1557200			14879	16681	10523	10542	16234	16234					0.07810333339944009
EVITRQKQL	9	Unmodified	_EVITRQKQL_					0	0	0		nc|ENSG00000138161|Q86UP6-2|CUZD1;ENSG00000138161|ENST00000392790|CUZD1	nc|ENSG00000138161|Q86UP6-2|CUZD1	nc|ENSG00000138161|Q86UP6-2|CUZD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.8323974609375	2	557.83258	1113.65061	-0.57163	-0.00031887	0.4595	0.00025632	-0.11213	-6.2548E-05	557.8327748604498	39.411	0.98373	39.246	38.934	39.918	-0.16458					66	25	4	0	0	0	0.15366	1	3349	3349		98.629	0	1	3364100			14880	5214	10524	10543	16235	16235					0.09832792288693781
EVITRQKQL	9	Unmodified	_EVITRQKQL_					0	0	0		nc|ENSG00000138161|Q86UP6-2|CUZD1;ENSG00000138161|ENST00000392790|CUZD1	nc|ENSG00000138161|Q86UP6-2|CUZD1	nc|ENSG00000138161|Q86UP6-2|CUZD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.83251953125	2	557.83258	1113.65061	-0.44717	-0.00024944	0.32718	0.00018251	-0.11999	-6.6934E-05	557.8327126997419	39.546	0.93165	39.323	39.035	39.967	-0.22311					63	23	4	0	0	0	0.086035	2	3358	3347;3358		115.49	0	1	3323900			14881	5214	10524	10543	16236;16237	16237					0.09832792288693781
EVITRQKQL	9	Unmodified	_EVITRQKQL_					0	0	0		nc|ENSG00000138161|Q86UP6-2|CUZD1;ENSG00000138161|ENST00000392790|CUZD1	nc|ENSG00000138161|Q86UP6-2|CUZD1	nc|ENSG00000138161|Q86UP6-2|CUZD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.83251953125	2	557.83258	1113.65061	-0.21163	-0.00011805	0.053522	2.9856E-05	-0.15811	-8.8198E-05	557.8325086443164	39.551	0.91224	39.325	39.022	39.934	-0.2257					62	23	4	0	0	0	0.16638	1	3343	3343		95.815	5.4453	1	3074900			14882	5214	10524	10543	16238	16238					0.09832792288693781
EVIVFIKVV	9	Unmodified	_EVIVFIKVV_					0	0	0		ENSG00000172139|ENST00000305815|SLC9C1;nc|ENSG00000172139|Q4G0N8-2|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7988891601562	2	523.336436	1044.65832	0.084722	4.4338E-05	0.060405	3.1612E-05	0.14513	7.595E-05	523.3364133210225	71.179	0.4245	70.921	70.739	71.164	-0.25712					16	9	2	0	0	0	0.024541	1	8335	8335		15.642	0.77694	1	252340			14883	8244	10525	10544	16239	16239					0.13777551556268008
EVIVKLRVG	9	Unmodified	_EVIVKLRVG_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.31549072265625	2	506.829309	1011.64407	-0.41248	-0.00020906	-0.61588	-0.00031214	-1.0284	-0.0005212	506.82900594332693	69.282	1.0541	69.297	68.9	69.955	0.015129					51	26	3	0	0	0	0.024427	1	8207	8207		26.693	12.029	1	910560			14884	8234	10526	10545	16240	16240					0.13870899127994107
EVKAKAREV	9	Unmodified	_EVKAKAREV_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4;nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4;nc|ENSG00000196440|Q5H9R4-2|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8324584960938	2	515.306198	1028.59784	0.79717	0.00041079	1.1128	0.00057343	1.91	0.00098422	515.3070998188126	18.243	0.39267	18.086	17.904	18.297	-0.15637					11	7	2	0	0	0	0.024541	1	272	272		24.519	8.8774	1	28694			14885	9876;18625	10527	10546	16241	16241					0.08468834225891442
EVKAKAREV	9	Unmodified	_EVKAKAREV_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4;nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4;nc|ENSG00000196440|Q5H9R4-2|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.306198	1028.59784	3.0582	0.0015759	7.0309	0.0036231	10.089	0.005199	515.3100331872157	18.496	0.49965	18.253	18.024	18.524	-0.24256	0.083533	0.00056617	NaN	24.519	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17380			14886	9876;18625	10527	10546							0.08468834225891442
EVKARTQEL	9	Unmodified	_EVKARTQEL_					0	0	0		nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.8081665039062	2	537.301113	1072.58767	-1.0761	-0.00057818	1.1565	0.00062136	0.080364	4.3179E-05	537.3021763209539	31.846	0.91365	31.689	31.489	32.403	-0.15772					40	21	3	0	0	0	0.023274	1	2124	2124		67.494	0	1	576640			14887	5179	10528	10547	16242	16242					0.05428226500657729
EVKDAIRLA	9	Unmodified	_EVKDAIRLA_					0	0	0			REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8004150390625	2	507.800749	1013.58694	-0.566	-0.00028742	-0.46637	-0.00023682	-1.0324	-0.00052424	507.80050060695794	31.108	1.6361	30.923	30.533	32.169	-0.18503					104	39	6	0	0	0	0.27161	1	2058	2058		79.451	2.6769	1	12349000	+		14888	20781	10529	10548	16243	16243					0.08069431851595255
EVKDPCFTI	9	Unmodified	_EVKDPCFTI_					0	0	0			REV__ENSG00000131398|ENST00000477616|KCNC3	REV__ENSG00000131398|ENST00000477616|KCNC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.8018798828125	2	526.260068	1050.50558	0.44978	0.0002367	2.5602	0.0013473	3.01	0.001584	526.2613881450152	76.021	0.60796	76.033	75.717	76.325	0.011635					24	15	2	0	0	0	0.024367	1	9314	9314		36.447	0	1	271410	+		14889	23208	10530	10549	16244	16244					-0.01765011902648439
EVKEEPPEP	9	Unmodified	_EVKEEPPEP_					0	0	0		nc|ENSG00000157657|Q5T7W0-3|ZNF618;ZNF618|p.G630Ffs*8|1|0.13|ENSG00000157657|chr9:114049187-114049196|GCCGGCATGT/-|frameshift_variant;nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ENSG00000157657|ENST00000374126|ZNF618	nc|ENSG00000157657|Q5T7W0-3|ZNF618	nc|ENSG00000157657|Q5T7W0-3|ZNF618	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2379760742188	2	527.258579	1052.50261	-0.97747	-0.00051538	-0.85805	-0.00045241	-1.8355	-0.00096779	527.2582142407815	68.826	0.7124	68.826	68.56	69.273	0					32	18	2	0	0	0	0.02435	1	8252	8252		42.396	0	1	356210			14890	6615	10531	10550	16245	16245					-0.021545637557892405
EVKEKVVL	8	Unmodified	_EVKEKVVL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2948303222656	2	472.294768	942.574983	-1.0284	-0.00048569	0.53545	0.00025289	-0.4929	-0.0002328	472.2950047208876	34.285	1.1409	34.11	33.781	34.922	-0.17557					78	28	5	0	0	0	0.27973	1	2487	2487		120.62	26.615	1	11889000			14891	3707	10532	10551	16246	16246					0.10139815108436778
EVKERVTL	8	Unmodified	_EVKERVTL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENST00000492773.5_1_3:183859720-183860594:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.28717041015625	2	487.287474	972.560395	-1.255	-0.00061155	0.88578	0.00043163	-0.36924	-0.00017993	487.28782199279004	38.617	1.0433	38.438	38.17	39.213	-0.17929					59	28	4	0	0	0	0.44952	1	3202	3202		90.37	8.1293	1	5786000			14892	5794	10533	10552	16247	16247					0.07301742960294177
EVKERVTL	8	Unmodified	_EVKERVTL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENST00000492773.5_1_3:183859720-183860594:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.28765869140625	2	487.287474	972.560395	-0.65151	-0.00031747	0.17095	8.3302E-05	-0.48056	-0.00023417	487.28750584322256	38.683	0.7411	38.462	38.187	38.928	-0.22148					49	19	4	0	0	0	0.53593	1	3219	3219		82.241	2.7895	1	5546400			14893	5794	10533	10552	16248	16248					0.07301742960294177
EVKFNLSPP	9	Unmodified	_EVKFNLSPP_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8041381835938	2	515.782025	1029.5495	0.013228	6.8229E-06	-2.3663	-0.0012205	-2.3531	-0.0012137	515.7806113419931	58.236	0.73319	58.236	57.946	58.679	0					47	18	4	0	0	0	0.02435	1	6579	6579		42.396	10.866	1	2834400	+		14894	36945	10534	10553	16249	16249					0.035903405860153725
EVKGFKHKLPL	11	Unmodified	_EVKGFKHKLPL_					0	0	0			REV__FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	REV__FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.59747314453125	3	432.599324	1294.77614	0.4437	0.00019194	-4.1305	-0.0017868	-3.6868	-0.0015949	432.5973879622935	105.47	0.95205	105.47	105	105.95	-0.00061798					82	32	4	0	0	0	1.0483	1	13464	13464		17.167	0	1	1634500	+		14895	21638	10535	10554	16250	16250					0.14054504144928615
EVKGLKNNL	9	Unmodified	_EVKGLKNNL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8001403808594	2	507.800749	1013.58694	-0.40153	-0.0002039	-0.65124	-0.0003307	-1.0528	-0.0005346	507.800441579446	31.14	1.3588	30.987	30.681	32.04	-0.15231					84	33	5	0	0	0	0.12602	1	2038	2038		104.75	19.831	1	12632000			14896	8104	10536	10555	16251	16251					0.08069431851606623
EVKGLVSLTL	10	Unmodified	_EVKGLVSLTL_					0	0	0			REV__ENST00000356362.6_1_7:105148646-105148826:-|nuORF	REV__ENST00000356362.6_1_7:105148646-105148826:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7850341796875	2	529.826432	1057.63831	-1.1574	-0.00061321	2.7059	0.0014337	1.5486	0.00082047	529.8276669971834	53.388	0.61651	53.241	53.023	53.639	-0.14723					42	16	4	0	0	0	0.03519	1	5763	5763		24.519	0	1	713970	+		14897	30792	10537	10556	16252	16252					0.11179755825651227
EVKGQKLII	9	Unmodified	_EVKGQKLII_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7429809570312	2	514.329142	1026.64373	-0.01869	-9.613E-06	0.43413	0.00022329	0.41544	0.00021367	514.329205433969	69.941	0.69779	69.941	69.383	70.081	0					43	17	4	0	0	0	0.024319	1	8435	8435		39.253	1.4413	1	1996100		+	14898	6216	10538	10557	16253	16253					0.13147479408144136
EVKGSMENEPK	11	Unmodified	_EVKGSMENEPK_					0	0	0			REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2205810546875	3	416.53606	1246.58635	-0.17918	-7.4634E-05	-1.0722	-0.00044662	-1.2514	-0.00052125	416.53552545887226	24.428	0.63478	24.253	23.963	24.598	-0.17484					33	14	3	0	0	0	0.024783	1	1098	1098		23.514	10.006	1	550950	+		14899	20276	10539	10558	16254	16254					-0.027077756504240824
EVKIRKAASN	10	Unmodified	_EVKIRKAASN_					0	0	0			REV__ENSG00000127152|ENST00000357195|BCL11B	REV__ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3322143554688	2	558.330205	1114.64586	0.33786	0.00018864	3.1976	0.0017853	3.5354	0.0019739	558.3319252829885	59.395	0.98627	59.206	58.897	59.883	-0.18885					73	24	5	0	0	0	0.78438	1	6558	6558		61.691	1.573	1	5632800	+		14900	22920	10540	10559	16255	16255					0.09311908145923553
EVKITPGKP	9	Unmodified	_EVKITPGKP_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.3088073730469	2	484.792392	967.570232	-0.058711	-2.8463E-05	-0.63266	-0.00030671	-0.69137	-0.00033517	484.7924015049265	64.448	0.6264	64.245	63.951	64.577	-0.20254					26	15	3	0	0	0	0.024337	1	7285	7285		41.427	5.8083	1	404370			14901	10648	10541	10560	16256	16256					0.08514930965668555
EVKITPGKP	9	Unmodified	_EVKITPGKP_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.792392	967.570232	-0.20937	-0.0001015	-0.20663	-0.00010018	-0.416	-0.00020167	484.7925035704509	64.351	0.47059	64.123	63.949	64.42	-0.22773	0.01295	7.0843E-05	NaN	41.427	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324210			14902	10648	10541	10560							0.08514930965668555
EVKKALSK	8	Unmodified	_EVKKALSK_					0	0	0		ENST00000512222.2_1_4:83050145-83050523:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3;AGPS-HNRNPA3|1|fusion;AGPS-HNRNPA3|2|fusion	ENST00000512222.2_1_4:83050145-83050523:+|nuORF	ENST00000512222.2_1_4:83050145-83050523:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.5135192871094	2	451.78711	901.559667	0.91842	0.00041493	-1.1064	-0.00049987	-0.18801	-8.494E-05	451.78648156201893	19.744	0.59176	19.544	19.305	19.897	-0.2001					30	11	4	0	0	0	0.027866	1	444	444		14.137	6.9438	1	644910			14903	45	10542	10561	16257	16257					0.10494948311236385
EVKKFGGI	8	Unmodified	_EVKKFGGI_					0	0	0			REV__ENSG00000122547|ENST00000242108|EEPD1	REV__ENSG00000122547|ENST00000242108|EEPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.21075439453125	2	439.260728	876.506903	-0.10164	-4.4648E-05	0.33804	0.00014849	0.2364	0.00010384	439.26078832534375	50.385	0.48224	50.279	50.049	50.531	-0.10558					18	12	2	0	0	0	0.027866	1	5138	5138		55.504	6.0627	1	372750	+		14904	22651	10543	10562	16258	16258					0.06370990248444741
EVKKHQVL	8	Unmodified	_EVKKHQVL_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.7978820800781	2	490.798009	979.581465	-0.25516	-0.00012523	-0.072913	-3.5786E-05	-0.32808	-0.00016102	490.7978393135601	19.616	0.78919	19.455	19.034	19.823	-0.16079					31	15	3	0	0	0	0.99042	1	449	449		38.806	6.8513	1	377690			14905	8423	10544	10563	16259	16259					0.09085753059810031
EVKKSVIK	8	Unmodified	_EVKKSVIK_					0	0	0			REV__GABRB1|p.M218I|1|0.22|ENSG00000163288|chr4:47403427-47403427|G/A|missense_variant	REV__GABRB1|p.M218I|1|0.22|ENSG00000163288|chr4:47403427-47403427|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.8026428222656	2	465.80276	929.590967	-0.4193	-0.00019531	0.30027	0.00013987	-0.11903	-5.5444E-05	465.8027519928512	28.788	0.69166	28.619	28.337	29.029	-0.16897					35	15	3	0	0	0	0.36844	1	1716	1716		101.6	22.15	1	1017300	+		14906	36056	10545	10564	16260	16260					0.1233552134533511
EVKKSVIK	8	Unmodified	_EVKKSVIK_					0	0	0			REV__GABRB1|p.M218I|1|0.22|ENSG00000163288|chr4:47403427-47403427|G/A|missense_variant	REV__GABRB1|p.M218I|1|0.22|ENSG00000163288|chr4:47403427-47403427|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	465.80276	929.590967	-0.4193	-0.00019531	0.30027	0.00013987	-0.11903	-5.5444E-05	465.8027519928512	28.788	0.69166	28.619	28.337	29.029	-0.16897	-0.036988	-0.00030485	NaN	101.6	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1017300	+		14907	36056	10545	10564							0.1233552134533511
EVKKSVIK	8	Unmodified	_EVKKSVIK_					0	0	0			REV__GABRB1|p.M218I|1|0.22|ENSG00000163288|chr4:47403427-47403427|G/A|missense_variant	REV__GABRB1|p.M218I|1|0.22|ENSG00000163288|chr4:47403427-47403427|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	465.80276	929.590967	-0.56316	-0.00026232	0.39645	0.00018467	-0.1667	-7.7651E-05	465.8028066714346	28.828	0.64325	28.679	28.444	29.087	-0.14952	0.022441	-0.00021525	NaN	101.6	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1236800	+		14908	36056	10545	10564							0.1233552134533511
EVKKVEPK	8	Unmodified	_EVKKVEPK_					0	0	0			REV__PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	REV__PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.76898193359375	2	478.792392	955.570232	-0.32212	-0.00015423	-0.47763	-0.00022869	-0.79976	-0.00038292	478.79190346532135	51.805	0.33557	51.657	51.511	51.846	-0.14735					15	9	2	0	0	0	0.027866	1	5489	5489		76.774	10.345	1	429090	+		14909	25829	10546	10565	16261	16261					0.09066930965661868
EVKKVLDL	8	Unmodified	_EVKKVLDL_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2953796386719	2	472.294768	942.574983	0.19548	9.2324E-05	-0.30112	-0.00014222	-0.10564	-4.9893E-05	472.29456751299625	34.314	1.6062	34.09	33.803	35.409	-0.22412					97	40	4	0	0	0	0.73796	1	2512	2512		64.207	0.901	1	14155000	+		14910	25275	10547	10566	16262	16262					0.10139815108436778
EVKKVLDL	8	Unmodified	_EVKKVLDL_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2953796386719	2	472.294768	942.574983	-0.079451	-3.7525E-05	-0.25633	-0.00012106	-0.33578	-0.00015859	472.294585765731	34.335	1.4948	34.128	33.824	35.319	-0.20696					89	37	5	0	0	0	0.80469	1	2502	2502		58.782	0.97068	1	12493000	+		14911	25275	10547	10566	16263	16263					0.10139815108436778
EVKKVVNP	8	Unmodified	_EVKKVVNP_					0	0	0		ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000441433.1_1_7:26961755-26962307:+|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000441433.1_1_7:26961755-26962307:+|nuORF	ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.3128356933594	2	456.779285	911.544017	-0.06677	-3.0499E-05	1.0267	0.000469	0.95997	0.0004385	456.779231728873	44.433	0.53903	44.47	44.176	44.715	0.036903					23	15	2	0	0	0	0.027866	1	4198	4198		47.916	22.465	1	162390			14912	13893;14362	10548	10567	16264	16264					0.08470661794183343
EVKLIIQV	8	Unmodified	_EVKLIIQV_					0	0	0		VCAM1|p.E593K|1|0.25|ENSG00000162692|chr1:100732669-100732669|G/A|missense_variant	VCAM1|p.E593K|1|0.25|ENSG00000162692|chr1:100732669-100732669|G/A|missense_variant	VCAM1|p.E593K|1|0.25|ENSG00000162692|chr1:100732669-100732669|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.30987548828125	2	471.305136	940.595718	5.7782	0.0027233	3.2777	0.0015448	9.0559	0.0042681	471.30652777434705	17.364	0.36707	17.425	17.287	17.654	0.06036					19	11	2	0	0	0	1.0574	1	126	126		18.324	0	1	42022			14913	38139	10549	10568	16265	16265					0.12304405488089287
EVKLLPRKL	9	Unmodified	_EVKLLPRKL_					0	0	0		ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MSMS	OPSCC_39_ClassI_Rep-1	1	548.7909545898438	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.237	1	66.237	65.737	66.737	0								0	0	0	0.67547	1	7881	7881		25.574	0	1				14914	794	10550	10569	16266	16266					0.17399447570460325
EVKLVEETVVP	11	Unmodified	_EVKLVEETVVP_					0	0	0		ENSG00000189139|ENST00000340446|FSCB	ENSG00000189139|ENST00000340446|FSCB	ENSG00000189139|ENST00000340446|FSCB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.3484497070312	2	621.353011	1240.69147	-0.40239	-0.00025003	-4.3734	-0.0027174	-4.7758	-0.0029675	621.3501069060541	102.86	0.46414	102.85	102.64	103.1	-0.0046005					27	11	3	0	0	0	1.0292	1	13106	13106		30.318	5.7985	1	1662700			14915	9794	10551	10570	16267	16267					0.08075088817645337
EVKPKAKTP	9	Unmodified	_EVKPKAKTP_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.76910400390625	2	499.305667	996.596781	-0.86087	-0.00042983	1.3118	0.00065499	0.45094	0.00022516	499.30614283970533	64.986	0.53673	64.986	64.69	65.226	0					23	14	2	0	0	0	0.0245	1	7713	7713		29.17	10.067	1	103270	+		14916	26045	10552	10571	16268	16268					0.09834619856997051
EVKPKAKTP	9	Unmodified	_EVKPKAKTP_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.305667	996.596781	-0.4791	-0.00023922	1.1017	0.00055009	0.62261	0.00031087	499.3058687420549	64.881	0.26476	64.918	64.78	65.045	0.037384	-0.033909	-0.00010127	NaN	44.377	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101550	+		14917	26045	10552	10571							0.09834619856997051
EVKQPSVL	8	Unmodified	_EVKQPSVL_					0	0	0			REV__ENST00000436008.6_1_6:3271771-3272092:-|nuORF	REV__ENST00000436008.6_1_6:3271771-3272092:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7791442871094	2	450.263468	898.512382	-0.47891	-0.00021564	0.67993	0.00030615	0.20102	9.0514E-05	450.263471726881	30.963	1.1636	30.782	30.162	31.325	-0.18062					68	28	3	0	0	0	0.027866	1	1972	1972		76.847	0	1	578320	+		14918	32455	10553	10572	16269	16269					0.05906669040234647
EVKSCDDFL	9	Unmodified	_EVKSCDDFL_					0	0	0		ENSG00000197721|ENST00000508064|CR1L;nc|ENSG00000197721|Q2VPA4-3|CR1L;nc|ENSG00000197721|Q2VPA4-2|CR1L	ENSG00000197721|ENST00000508064|CR1L	ENSG00000197721|ENST00000508064|CR1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2393798828125	2	528.239332	1054.46411	1.2267	0.000648	-1.4935	-0.00078894	-0.26682	-0.00014094	528.238467567401	63.16	2.5034	63.215	62.801	65.305	0.054104					190	67	4	0	0	0	0.45795	1	7326	7326		62.107	1.9892	1	23832000			14919	10039	10554	10573	16270	16270					-0.060941926619761944
EVKTLKEP	8	Unmodified	_EVKTLKEP_					0	0	0			REV__nc|ENSG00000176714|Q6ZUS5-2|CCDC121	REV__nc|ENSG00000176714|Q6ZUS5-2|CCDC121	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.25701904296875	2	472.276575	942.538597	0.73092	0.0003452	-0.40788	-0.00019263	0.32304	0.00015256	472.27611310285147	74.786	0.58019	74.527	74.244	74.824	-0.25887					28	13	3	0	0	0	0.027866	1	9133	9133		31.955	0	1	381390	+		14920	36967	10555	10574	16271	16271					0.06502938211713172
EVKTLKEP	8	Unmodified	_EVKTLKEP_					0	0	0			REV__nc|ENSG00000176714|Q6ZUS5-2|CCDC121	REV__nc|ENSG00000176714|Q6ZUS5-2|CCDC121	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.276575	942.538597	-0.061114	-2.8863E-05	0.11902	5.6208E-05	0.057901	2.7345E-05	472.2764090985827	74.608	0.67044	74.618	74.224	74.895	0.0096512	0.068715	0.00084691	NaN	37.159	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289120	+		14921	36967	10555	10574							0.06502938211713172
EVKTSELR	8	Unmodified	_EVKTSELR_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.26922607421875	2	481.269281	960.52401	0.04204	2.0233E-05	-0.40952	-0.00019709	-0.36748	-0.00017686	481.2690125553184	30.979	0.71528	30.826	30.553	31.269	-0.15231					52	17	5	0	0	0	0.87148	1	2002	2002		53.351	0	1	4058500			14922	10421	10556	10575	16272	16272					0.042168660635638844
EVKVKLIVL	9	Unmodified	_EVKVKLIVL_					0	0	0		ENSG00000158769|ENST00000368026|F11R	ENSG00000158769|ENST00000368026|F11R	ENSG00000158769|ENST00000368026|F11R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2411499023438	2	520.857535	1039.70052	-0.57346	-0.00029869	0.0081746	4.2578E-06	-0.56529	-0.00029444	520.8573709907864	76.132	1.1743	75.903	75.598	76.772	-0.22843					84	29	4	0	0	0	0.024487	1	9309	9309		31.955	14.59	1	3329800			14923	6700	10557	10576	16273	16273					0.1822552696467028
EVKVKVER	8	Unmodified	_EVKVKVER_					0	0	0			REV__nc|ENSG00000141568|Q01167-2|FOXK2	REV__nc|ENSG00000141568|Q01167-2|FOXK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7862243652344	2	493.803291	985.59203	-0.47619	-0.00023514	0.077768	3.8402E-05	-0.39842	-0.00019674	493.80320392028545	32.674	0.65422	32.437	32.216	32.87	-0.23666					24	15	2	0	0	0	0.027866	1	2262	2262		56.721	1.2168	1	171100	+		14924	24106	10558	10577	16274	16274					0.09865735714242874
EVKVQTAAL	9	Unmodified	_EVKVQTAAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7823486328125	2	479.782025	957.549496	-0.20966	-0.00010059	-0.90276	-0.00043313	-1.1124	-0.00053372	479.7814594700669	43.854	0.55727	43.749	43.507	44.064	-0.10468					31	14	3	0	0	0	0.12602	1	4051	4051		104.75	19.586	1	2252300			14925	9548	10559	10578	16275	16275					0.06902340586009359
EVKVQTAAL	9	Unmodified	_EVKVQTAAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.782025	957.549496	-0.75503	-0.00036225	-0.39177	-0.00018796	-1.1468	-0.00055021	479.78170887051925	44.029	0.61411	43.81	43.562	44.176	-0.21938	0.033205	-2.3353E-06	NaN	104.75	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2046000			14926	9548	10559	10578							0.06902340586009359
EVKWKLVS	8	Unmodified	_EVKWKLVS_					0	0	0			REV__ENST00000498264.1_1_7:15435709-15435757:-|nuORF	REV__ENST00000498264.1_1_7:15435709-15435757:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.79730224609375	2	494.794935	987.575317	-0.89206	-0.00044139	3.0302	0.0014993	2.1381	0.0010579	494.79631089813	60.816	0.63449	60.64	60.362	60.997	-0.1761					35	15	3	0	0	0	0.027866	1	6827	6827		19.997	0	1	392550	+		14927	33877	10560	10579	16276	16276					0.08103234828274708
EVKWKLVS	8	Unmodified	_EVKWKLVS_					0	0	0			REV__ENST00000498264.1_1_7:15435709-15435757:-|nuORF	REV__ENST00000498264.1_1_7:15435709-15435757:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.79766845703125	2	494.794935	987.575317	-0.83921	-0.00041524	3.1489	0.001558	2.3096	0.0011428	494.79613826042413	60.943	0.75835	60.69	60.378	61.137	-0.25373					35	18	3	0	0	0	0.027866	1	6831	6831		34.173	5.023	1	355290	+		14928	33877	10560	10579	16277	16277					0.08103234828274708
EVKYSTYGTG	10	Unmodified	_EVKYSTYGTG_					0	0	0		ENSG00000148600|ENST00000623527|CDHR1;nc|ENSG00000148600|Q96JP9-2|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.3070678710938	2	552.764029	1103.5135	-0.47902	-0.00026478	1.5163	0.00083815	1.0373	0.00057337	552.7645153014348	44.501	0.30548	44.538	44.375	44.681	0.036903					14	8	2	0	0	0	0.03519	1	4190	4190		34.173	7.3764	1	163000			14929	6041	10561	10580	16278	16278					-0.03411161381518468
EVKYSTYGTG	10	Unmodified	_EVKYSTYGTG_					0	0	0		ENSG00000148600|ENST00000623527|CDHR1;nc|ENSG00000148600|Q96JP9-2|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.764029	1103.5135	-1.5186	-0.00083945	2.5407	0.0014044	1.0221	0.00056497	552.7650466777499	44.606	0.50721	44.457	44.256	44.763	-0.1488	-0.019377	0.00072076	NaN	31.53	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141730			14930	6041	10561	10580							-0.03411161381518468
EVLALDPASP	10	Unmodified	_EVLALDPASP_					0	0	0			REV__ENSG00000174945|ENST00000683327|AMZ1	REV__ENSG00000174945|ENST00000683327|AMZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27191162109375	2	506.27149	1010.52843	-0.42001	-0.00021264	4.1649	0.0021086	3.7449	0.0018959	506.2734390519019	35.401	1.0297	35.445	34.868	35.898	0.04406					34	26	2	0	0	0	0.03519	1	2732	2732		31.53	0	1	105370	+		14931	26907	10562	10581	16279	16279					0.023583304864814636
EVLASALSAE	10	Unmodified	_EVLASALSAE_					0	0	0			REV__ENSG00000168497|ENST00000304141|CAVIN2	REV__ENSG00000168497|ENST00000304141|CAVIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2923278808594	2	495.261122	988.507691	0.45897	0.00022731	-3.4454	-0.0017063	-2.9864	-0.001479	495.25966558464995	68.396	0.2366	68.166	67.958	68.195	-0.23047					7	5	2	0	0	0	0.03519	1	7878	7878		32.812	0	1	112660	+		14932	26266	10563	10582	16280	16280					0.012977401068042127
EVLATALLGG	10	Unmodified	_EVLATALLGG_					0	0	0			REV__ENST00000478951.5_1_3:111717614-111717758:+|nuORF	REV__ENST00000478951.5_1_3:111717614-111717758:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2568359375	2	472.276575	942.538597	2.0093	0.00094894	-1.7848	-0.00084291	0.2245	0.00010603	472.2754846701872	74.503	0.5815	74.503	74.215	74.796	0					23	13	2	0	0	0	0.03519	1	9122	9122		44.117	13.613	1	348760	+		14933	33384	10564	10583	16281	16281					0.06502938211713172
EVLDLKPNGKV	11	Unmodified	_EVLDLKPNGKV_					0	0	0		nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-3|ASNS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.5720520019531	3	404.571322	1210.69214	0.65152	0.00026359	0.70946	0.00028703	1.361	0.00055061	404.5715469077739	20.83	0.91981	20.663	20.345	21.265	-0.16774					59	18	5	0	0	0	1.044	1	607	607		26.75	5.064	1	911560			14934	1431	10565	10584	16282	16282					0.09521928257368018
EVLDLLLEP	9	Unmodified	_EVLDLLLEP_					0	0	0		ENST00000396355.5_1_16:15818059-15818287:+|nuORF	ENST00000396355.5_1_16:15818059-15818287:+|nuORF	ENST00000396355.5_1_16:15818059-15818287:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7694702148438	2	520.79734	1039.58013	-1.3624	-0.00070955	3.7238	0.0019393	2.3613	0.0012298	520.7993232839143	52.294	0.66793	52.025	51.725	52.393	-0.26903					26	17	2	0	0	0	0.024323	1	5465	5465		44.117	12.162	1	142380			14935	13550	10566	10585	16283	16283					0.06192074180376039
EVLDLLLEP	9	Unmodified	_EVLDLLLEP_					0	0	0		ENST00000396355.5_1_16:15818059-15818287:+|nuORF	ENST00000396355.5_1_16:15818059-15818287:+|nuORF	ENST00000396355.5_1_16:15818059-15818287:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.79734	1039.58013	-0.60241	-0.00031374	2.9485	0.0015356	2.3461	0.0012218	520.7987407086539	52.021	0.40717	51.902	51.719	52.126	-0.11876	-0.086858	0.00014243	NaN	44.117	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109120			14936	13550	10566	10585							0.06192074180376039
EVLDNTQQL	9	Unmodified	_EVLDNTQQL_					0	0	0		ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7852783203125	2	530.269478	1058.5244	-0.96488	-0.00051165	-2.2612	-0.0011991	-3.2261	-0.0017107	530.2683660553192	52.995	0.44288	52.995	52.789	53.232	0					29	11	3	0	0	0	0.022832	1	5703	5703		71.877	0	1	512740			14937	8189	10567	10586	16284	16284					-0.0025175900723297673
EVLDNTQQL	9	Unmodified	_EVLDNTQQL_					0	0	0		ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7858276367188	2	530.269478	1058.5244	-0.70031	-0.00037135	-1.4747	-0.00078198	-2.175	-0.0011533	530.2682591328681	53.076	0.45018	52.929	52.682	53.132	-0.14723					29	11	3	0	0	0	0.023007	1	5693	5693		66.429	0	1	541900			14938	8189	10567	10586	16285	16285					-0.0025175900723297673
EVLEAWKSL	9	Unmodified	_EVLEAWKSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3281860351562	2	537.795132	1073.57571	-1.4145	-0.0007607	4.205	0.0022614	2.7906	0.0015007	537.7972246313421	80.75	1.324	80.774	80.656	81.98	0.023903					47	32	2	0	0	0	0.023655	1	10128	10128		79.713	7.8351	1	118450			14939	3431	10568	10587	16286	16286					0.0418660975747116
EVLEELIVL	9	Unmodified	_EVLEELIVL_					0	0	0		ENSG00000126246|ENST00000246532|IGFLR1;nc|ENSG00000126246|Q9H665-2|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.7952270507812	2	528.81299	1055.61143	-1.5474	-0.00081829	2.15	0.0011369	0.60258	0.00031865	529.3160666235771	62.421	0.71881	62.421	62.335	63.054	0					55	18	4	0	0	0	0.024381	1	7349	7349		55.504	11.387	1	1177700			14940	4188	10569	10588	16287	16287					0.08584647214479446
EVLEIFPLQL	10	Unmodified	_EVLEIFPLQL_					0	0	0		ENST00000467936.5_1_3:45542057-45579920:+|nuORF	ENST00000467936.5_1_3:45542057-45579920:+|nuORF	ENST00000467936.5_1_3:45542057-45579920:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.8861083984375	3	400.900668	1199.68018	0.082718	3.3162E-05	-4.0411	-0.0016201	-3.9584	-0.0015869	400.8988183417438	55.001	0.70777	54.795	54.502	55.21	-0.20613					41	19	3	0	0	0	0.03519	1	5853	5853		15.333	1.2471	1	794420			14941	14858	10570	10589	16288	16288					0.088323115141975
EVLEKYDP	8	Unmodified	_EVLEKYDP_					0	0	0			REV__ENSG00000182676|ENST00000330261|PPP1R27	REV__ENSG00000182676|ENST00000330261|PPP1R27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.779296875	2	496.75039	991.486227	-0.6453	-0.00032055	-4.1137	-0.0020435	-4.759	-0.0023641	496.7482222220097	51.655	0.61832	51.507	51.228	51.846	-0.14735					42	17	3	0	0	0	0.027866	1	5416	5416		25.45	0	1	1764400	+		14942	27503	10571	10590	16289	16289					-0.009856449219114438
EVLESLFQL	9	Unmodified	_EVLESLFQL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.794921875	2	539.294965	1076.57538	-1.3791	-0.00074376	0.43622	0.00023525	-0.94292	-0.00050851	539.2953011005633	81.042	1.4995	80.911	80.322	81.821	-0.13075					96	36	5	0	0	0	0.12602	1	10099	10099		104.75	11.551	1	7121500			14943	774	10572	10591	16290	16290					0.040151900376031335
EVLEYFDEEL	10	Unmodified	_EVLEYFDEEL_					0	0	0			REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.9346008300781	3	429.199331	1284.57616	-0.29938	-0.00012849	-1.3067	-0.00056083	-1.6061	-0.00068932	429.19872156704275	28.147	0.64433	27.902	27.718	28.363	-0.24524					28	15	2	0	0	0	0.03519	1	1661	1661		33.922	21.489	1	729590	+		14944	20106	10573	10592	16291	16291					-0.05474060103961165
EVLFLLGLF	9	Unmodified	_EVLFLLGLF_					0	0	0		nc|ENSG00000226098|P0C7V7|SEC11B	nc|ENSG00000226098|P0C7V7|SEC11B	nc|ENSG00000226098|P0C7V7|SEC11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.6434936523438	2	525.815336	1049.61612	-1.0092	-0.00053064	1.6793	0.00088302	0.67015	0.00035238	525.8160204892818	103.4	0.52731	103.4	103.21	103.74	0					23	12	3	0	0	0	0.024487	1	13306	13306		24.203	0	1	104050			14945	18736	10574	10593	16292	16292					0.09329576147888474
EVLGRCFLT	9	Unmodified	_EVLGRCFLT_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8182983398438	2	519.276052	1036.53755	0.26262	0.00013637	-0.89309	-0.00046376	-0.63047	-0.00032739	519.776604732104	71.05	0.19768	71.05	70.987	71.185	0					7	4	2	0	0	0	0.024344	1	8613	8613		30.318	8.3578	1	381050			14946	7551	10575	10594	16293	16293					0.020744005711549107
EVLIDIINK	9	Unmodified	_EVLIDIINK_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.3213500976562	2	528.818607	1055.62266	-0.0439	-2.3215E-05	0.66937	0.00035398	0.62547	0.00033076	528.8184520375157	82.894	0.9482	82.713	82.244	83.192	-0.18079					44	21	3	0	0	0	0.6504	1	10009	10009		49.442	3.4693	1	359950			14947	18641	10576	10595	16294	16294					0.09707469308614236
EVLINLRNP	9	Unmodified	_EVLINLRNP_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.8323364257812	2	534.314023	1066.61349	0.11155	5.9602E-05	3.6784	0.0019654	3.79	0.002025	534.3158551578689	79.103	0.3356	78.848	78.644	78.979	-0.25471					15	7	3	0	0	0	0.024527	1	9449	9449		31.53	7.3271	1	103900			14948	2989	10577	10596	16295	16295					0.08285120742925756
EVLINLRNP	9	Unmodified	_EVLINLRNP_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.314023	1066.61349	-0.18578	-9.9267E-05	3.8787	0.0020725	3.6929	0.0019732	534.3159922438119	79.031	0.3355	78.8	78.607	78.942	-0.23141	-0.014086	2.4352E-05	NaN	31.53	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130140			14949	2989	10577	10596							0.08285120742925756
EVLINLRNP	9	Unmodified	_EVLINLRNP_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.314023	1066.61349	-0.26451	-0.00014133	3.9694	0.0021209	3.7049	0.0019796	534.3160283470021	78.95	0.3804	78.794	78.557	78.938	-0.15591	-0.020228	0.00012128	NaN	31.53	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135730			14950	2989	10577	10596							0.08285120742925756
EVLIVTGVVD	10	Unmodified	_EVLIVTGVVD_					0	0	0		nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17;nc|ENSG00000132972|Q9BXT8-1|RNF17;RNF17|p.V961Cfs*2|1|0.07|ENSG00000132972|chr13:24844699-24844700|-/T|frameshift_variant;RNF17|p.K962Lfs*3|1|0.07|ENSG00000132972|chr13:24844701-24844702|-/TTCTTCC|frameshift_variant	nc|ENSG00000132972|Q9BXT8-4|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2726440429688	2	522.30279	1042.59103	-1.3614	-0.00071108	3.1928	0.0016676	1.8314	0.00095652	522.8052160339387	62.749	0.32396	62.749	62.572	62.896	0					10	7	2	0	0	0	0.03519	1	7304	7304		26.693	0	1	110630			14951	4668	10578	10597	16296	16296					0.07143476554688277
EVLKCLIQL	9	Unmodified	_EVLKCLIQL_					0	0	0			REV__ENST00000422141.1_1_X:126525559-126525766:+|nuORF	REV__ENST00000422141.1_1_X:126525559-126525766:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8141479492188	2	529.817553	1057.62055	-0.022367	-1.185E-05	-3.8835	-0.0020576	-3.9059	-0.0020694	529.8135080469444	80.472	0.86749	80.326	79.785	80.652	-0.146					38	20	3	0	0	0	0.32811	1	9640	9640		71.877	3.0313	1	554740	+		14952	32197	10579	10598	16297	16297					0.09404717299162257
EVLKLIFR	8	Unmodified	_EVLKLIFR_					0	0	0		INPP5A|p.V264L|1|0.28|ENSG00000068383|chr10:132749574-132749574|G/T|missense_variant	INPP5A|p.V264L|1|0.28|ENSG00000068383|chr10:132749574-132749574|G/T|missense_variant	INPP5A|p.V264L|1|0.28|ENSG00000068383|chr10:132749574-132749574|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.30572509765625	2	509.326402	1016.63825	-0.17337	-8.8299E-05	-4.236	-0.0021575	-4.4093	-0.0022458	509.32424640989296	22.263	0.33753	22.061	21.903	22.24	-0.20198					11	6	2	0	0	0	0.027866	1	738	738		25.45	2.4077	1	53933			14953	17770	10580	10599	16298	16298					0.13059800616315442
EVLKLLHR	8	Unmodified	_EVLKLLHR_					0	0	0		nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A	nc|ENSG00000058272|O14974-3|PPP1R12A	nc|ENSG00000058272|O14974-3|PPP1R12A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.2455139160156	2	504.321651	1006.62875	-0.80572	-0.00040634	-3.3034	-0.001666	-4.1091	-0.0020723	504.31991814237097	56.266	0.76865	56.05	55.745	56.514	-0.21551					30	19	3	0	0	0	0.027866	1	6121	6121		27.882	4.8398	1	133440			14954	1213	10581	10600	16299	16299					0.12570032330791037
EVLKTWSH	8	Unmodified	_EVLKTWSH_					0	0	0		nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7923583984375	2	500.266542	998.51853	-0.21653	-0.00010832	3.2889	0.0016453	3.0724	0.001537	500.26795012792047	52.771	0.50243	52.771	52.472	52.974	0					18	12	2	0	0	0	0.027866	1	5654	5654		35.618	3.6634	1	264450			14955	10700	10582	10601	16300	16300					0.01921187271761937
EVLLAPLLPPR	11	Unmodified	_EVLLAPLLPPR_					0	0	0		nc|ENSG00000182196|Q66PJ3-6|ARL6IP4	nc|ENSG00000182196|Q66PJ3-6|ARL6IP4	nc|ENSG00000182196|Q66PJ3-6|ARL6IP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.7349548339844	3	406.592058	1216.75434	0.74408	0.00030254	-2.8769	-0.0011697	-2.1328	-0.00086718	406.59082872488307	22.369	0.32043	22.18	22.007	22.327	-0.18894					15	6	3	0	0	0	0.024801	1	790	790		12.957	3.3113	1	63973			14956	18568	10583	10602	16301	16301					0.15463699396354968
EVLLELLGP	9	Unmodified	_EVLLELLGP_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.2976379394531	2	491.794601	981.574648	-0.63498	-0.00031228	3.2593	0.0016029	2.6243	0.0012906	491.79600483017987	47.5	1.5976	47.404	46.295	47.893	-0.096649					123	43	5	0	0	0	0.88411	1	4651	4651		33.516	1.5607	1	5430200	+		14957	22372	10584	10603	16302	16302					0.08312395388566074
EVLLKPLTA	9	Unmodified	_EVLLKPLTA_					0	0	0			REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3058776855469	2	492.310418	982.606283	0.025008	1.2312E-05	0.69863	0.00034394	0.72363	0.00035625	492.3106197453485	69.29	0.61282	69.29	69.056	69.669	0					27	15	2	0	0	0	0.024466	1	8363	8363		31.53	3.6476	1	336980	+		14958	22675	10585	10604	16303	16303					0.11428388142496715
EVLLPEAM	8	Unmodified	_EVLLPEAM_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2510070800781	2	451.238604	900.462655	-0.30834	-0.00013913	-2.4232	-0.0010935	-2.7316	-0.0012326	451.2371780753946	35.254	0.60268	35.298	35.014	35.616	0.04406					27	15	2	0	0	0	0.027866	1	2663	2663		12.959	0	1	345830			14959	11068	10586	10605	16304	16304					0.008442180399242716
EVLNKHSL	8	Unmodified	_EVLNKHSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2667236328125	2	470.266542	938.51853	-0.34641	-0.0001629	0.10996	5.171E-05	-0.23645	-0.00011119	470.2665127384437	29.852	1.2653	29.607	29.317	30.582	-0.24415					60	29	4	0	0	0	0.2917	1	1878	1878		115.46	5.1217	1	3146500			14960	2081	10587	10606	16305	16305					0.0468118727176261
EVLNKHSL	8	Unmodified	_EVLNKHSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.26666259765625	2	470.266542	938.51853	-0.57485	-0.00027033	0.3532	0.0001661	-0.22165	-0.00010424	470.26662877874793	29.744	1.1735	29.571	29.242	30.416	-0.17258					62	27	4	0	0	0	0.27973	1	1853	1853		120.62	5.162	1	3173800			14961	2081	10587	10606	16306	16306					0.0468118727176261
EVLNKHSL	8	Unmodified	_EVLNKHSL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.26654052734375	2	470.266542	938.51853	-0.43493	-0.00020453	0.13595	6.3932E-05	-0.29898	-0.0001406	470.266518762673	29.768	1.1302	29.618	29.129	30.259	-0.14952					64	26	4	0	0	0	0.2917	1	1842	1842		115.46	5.1217	1	3055300			14962	2081	10587	10606	16307	16307					0.0468118727176261
EVLPPQAH	8	Unmodified	_EVLPPQAH_					0	0	0		nc|ENSG00000117407|Q5T4W7-2|ARTN	nc|ENSG00000117407|Q5T4W7-2|ARTN	nc|ENSG00000117407|Q5T4W7-2|ARTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.23223876953125	2	445.74016	889.465767	-0.3328	-0.00014834	0.72615	0.00032367	0.39335	0.00017533	445.7399178098913	37.61	0.51147	37.643	37.377	37.889	0.032269					32	13	3	0	0	0	0.027866	1	3059	3059		33.516	9.3128	1	254360			14963	18201	10588	10607	16308	16308					0.016612292089348557
EVLPQDVCL	9	Unmodified	_EVLPQDVCL_					0	0	0			REV__nc|ENSG00000104774|O00754-2|MAN2B1	REV__nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8001708984375	2	508.260068	1014.50558	-0.34628	-0.000176	-2.4637	-0.0012522	-2.81	-0.0014282	508.25828679639767	31.155	0.79788	30.914	30.497	31.295	-0.24109					26	19	2	0	0	0	0.023007	1	2032	2032		76.774	0	1	77439	+		14964	21462	10589	10608	16309	16309					-0.0010901190264576144
EVLPRTESP	9	Unmodified	_EVLPRTESP_					0	0	0			REV__ENST00000547357.5_1_12:82752311-82853681:+|nuORF	REV__ENST00000547357.5_1_12:82752311-82853681:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3032836914062	2	514.274564	1026.53457	-0.8308	-0.00042726	-3.1102	-0.0015995	-3.941	-0.0020267	514.775139989337	37.069	0.54493	36.85	36.686	37.231	-0.2195					19	13	2	0	0	0	0.02435	1	2987	2987		42.396	0	1	52303	+		14965	22946	10590	10609	16310	16310					0.022368487179846852
EVLQLLGLL	9	Unmodified	_EVLQLLGLL_					0	0	0		ENST00000547081.1_1_12:107365083-107365125:+|nuORF	ENST00000547081.1_1_12:107365083-107365125:+|nuORF	ENST00000547081.1_1_12:107365083-107365125:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.31903076171875	2	499.318243	996.621933	-0.10608	-5.2968E-05	-0.051293	-2.5611E-05	-0.15737	-7.858E-05	499.3180515478282	96.682	1.2103	96.682	96.115	97.325	0					61	27	3	0	0	0	0.62163	1	12339	12339		51.335	7.2187	1	848190			14966	16520	10591	10610	16311	16311					0.12348674659574499
EVLQRGEAL	9	Unmodified	_EVLQRGEAL_					0	0	0		PSMB4-SEC22B|1|fusion;ENSG00000265808|ENST00000578049|SEC22B	PSMB4-SEC22B|1|fusion	PSMB4-SEC22B|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.78271484375	2	507.782556	1013.55056	-0.095284	-4.8383E-05	-0.27886	-0.0001416	-0.37414	-0.00018998	507.78231218812124	41.84	0.69444	41.717	41.421	42.116	-0.12299					55	18	4	0	0	0	0.013887	3	3715	3715;3726;3740		180.93	84.736	1	4409100			14967	10969	10592	10611	16312;16313;16314	16312					0.04432554954905754
EVLQRGEAL	9	Unmodified	_EVLQRGEAL_					0	0	0		PSMB4-SEC22B|1|fusion;ENSG00000265808|ENST00000578049|SEC22B	PSMB4-SEC22B|1|fusion	PSMB4-SEC22B|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7825012207031	2	507.782556	1013.55056	-0.56644	-0.00028763	0.43412	0.00022044	-0.13232	-6.719E-05	507.7825950863457	42.039	0.6862	41.807	41.508	42.194	-0.23186					51	18	4	0	0	0	0.014034	3	3733	3733;3743;3756		166.68	58.591	1	4532100			14968	10969	10592	10611	16315;16316;16317	16315					0.04432554954905754
EVLQRGEAL	9	Unmodified	_EVLQRGEAL_					0	0	0		PSMB4-SEC22B|1|fusion;ENSG00000265808|ENST00000578049|SEC22B	PSMB4-SEC22B|1|fusion	PSMB4-SEC22B|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7818603515625	2	507.782556	1013.55056	-0.28287	-0.00014364	-0.041413	-2.1029E-05	-0.32429	-0.00016467	507.7823703197838	42.071	0.70718	41.841	41.508	42.216	-0.2303					55	18	4	0	0	0	0.021872	3	3748	3727;3737;3748		148.04	43.296	1	4459600			14969	10969	10592	10611	16318;16319;16320	16320					0.04432554954905754
EVLQYLFSND	10	Unmodified	_EVLQYLFSND_					0	0	0		ENSG00000090857|ENST00000288050|PDPR;ENST00000566802.5_1_16:74366359-74378726:-|nuORF	ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.88043212890625	3	409.867916	1226.58192	-0.2416	-9.9026E-05	4.3388	0.0017783	4.0972	0.0016793	409.8702296820301	33.232	0.28886	33.239	32.967	33.255	0.0066261					11	7	3	0	0	0	0.03519	1	2338	2338		6.001	3.467	1	521690			14970	1940	10593	10612	16321	16321					-0.02230916801681815
EVLRINMH	8	Unmodified	_EVLRINMH_					0	0	0			REV__nc|ENSG00000187627|P0DJD0|RGPD1	REV__nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3006591796875	2	506.273844	1010.53313	-0.74063	-0.00037496	0.10659	5.3964E-05	-0.63404	-0.000321	506.2742369956617	32.551	0.14919	32.551	32.457	32.606	0					5	3	2	0	0	0	0.027866	1	2256	2256		23.042	18.361	1	74925	+		14971	27753	10594	10613	16322	16322					0.02828936148239336
EVLRRRVR	8	Unmodified	_EVLRRRVR_					0	0	0			REV__ENST00000587455.1_1_17:39967344-39967383:-|nuORF	REV__ENST00000587455.1_1_17:39967344-39967383:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2808227539062	2	542.346523	1082.67849	-1.1451	-0.00062106	3.5362	0.0019178	2.3911	0.0012968	542.8501819895484	62.47	0.19295	62.212	62.096	62.289	-0.25824					6	4	2	0	0	0	0.027866	1	7003	7003		3.41	2.2049	1	87224	+		14972	35626	10595	10614	16323	16323					0.1404616005945627
EVLRTLAGKP	10	Unmodified	_EVLRTLAGKP_					0	0	0		ENSG00000175164|ENST00000538324|ABO;nc|ENSG00000175164|P16442|ABO	ENSG00000175164|ENST00000538324|ABO	ENSG00000175164|ENST00000538324|ABO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7763671875	2	542.329673	1082.64479	-0.80807	-0.00043824	-0.48537	-0.00026323	-1.2934	-0.00070147	542.3291906126751	67.303	1.0322	67.015	66.791	67.823	-0.28835					50	25	3	0	0	0	0.03519	1	8077	8077		82.241	0	1	699590			14973	8533	10596	10615	16324	16324					0.10677693777029162
EVLSHYIK	8	Unmodified	_EVLSHYIK_					0	0	0		ENSG00000116191|ENST00000367635|RALGPS2;nc|ENSG00000116191|Q86X27-3|RALGPS2;nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF	ENSG00000116191|ENST00000367635|RALGPS2	ENSG00000116191|ENST00000367635|RALGPS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7763366699219	2	494.776742	987.538931	0.086041	4.2571E-05	0.030866	1.5272E-05	0.11691	5.7843E-05	494.7765898022392	52.372	0.69855	52.372	52.012	52.711	0					30	17	2	0	0	0	0.81662	1	5620	5620		57.811	2.3071	1	1700800			14974	3530	10597	10616	16325	16325					0.044663579315511015
EVLSKIPK	8	Unmodified	_EVLSKIPK_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2607727050781	2	457.289485	912.564418	0.39033	0.00017849	0.34456	0.00015756	0.73488	0.00033605	457.2894618709908	77.737	0.49081	77.737	77.551	78.042	0					13	11	2	0	0	0	0.027866	1	9624	9624		20.947	0	1	52768			14975	2544	10598	10617	16326	16326					0.10463832453990562
EVLSRKQP	8	Unmodified	_EVLSRKQP_					0	0	0		ENSG00000104312|ENST00000220751|RIPK2;nc|ENSG00000104312|O43353-2|RIPK2;ENST00000522965.1_1_8:90770176-90802641:+|nuORF	ENSG00000104312|ENST00000220751|RIPK2	ENSG00000104312|ENST00000220751|RIPK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7967529296875	2	478.779816	955.545079	-0.12163	-5.8233E-05	0.57896	0.0002772	0.45733	0.00021896	478.7799399298619	45.765	0.85586	45.808	45.512	46.368	0.04388					52	24	3	0	0	0	0.027866	1	4418	4418		35.618	0	1	1581900			14976	2557	10599	10618	16327	16327					0.0655287616308442
EVLTPFSR	8	Unmodified	_EVLTPFSR_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7848205566406	2	474.761092	947.507631	-0.70556	-0.00033497	-1.252	-0.00059441	-1.9576	-0.00092938	474.76124948376645	34.489	0.24557	34.313	34.128	34.374	-0.17557					6	5	2	0	0	0	0.027866	1	2531	2531		12.207	0	1	50198			14977	4317	10600	10619	16328	16328					0.03177784897479796
EVLTPVKSP	9	Unmodified	_EVLTPVKSP_					0	0	0			REV__ENST00000478269.5_1_3:50380731-50381380:-|nuORF	REV__ENST00000478269.5_1_3:50380731-50381380:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2613525390625	2	485.2844	968.554247	-0.90992	-0.00044157	3.4401	0.0016694	2.5302	0.0012279	485.2859578828689	38.243	0.93668	38.161	37.671	38.607	-0.082512					47	25	4	0	0	0	0.023817	1	3179	3179		71.296	0	1	290960	+		14978	33360	10601	10620	16329	16329					0.06871224728763536
EVLVPLGREKR	11	Unmodified	_EVLVPLGREKR_					0	0	0			REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.5972595214844	3	432.597983	1294.77212	0.16554	7.1611E-05	-0.86599	-0.00037463	-0.70045	-0.00030302	432.5974660860079	105.35	0.96638	105.35	104.84	105.81	0.00097656					89	32	4	0	0	0	1.0344	1	13489	13489		25.892	3.3301	1	1518400	+		14979	21018	10602	10621	16330	16330					0.13652414651210165
EVLVPLGREKR	11	Unmodified	_EVLVPLGREKR_					0	0	0			REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	432.597983	1294.77212	0.4437	0.00019194	-1.0308	-0.00044592	-0.58709	-0.00025397	432.5973879622935	105.47	0.95205	105.47	105	105.95	-0.00061798	0.084551	-6.4578E-05	NaN	25.892	82	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1634500	+		14980	21018	10602	10621							0.13652414651210165
EVLVPRGIGP	10	Unmodified	_EVLVPRGIGP_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.810302734375	2	518.811116	1035.60768	0.7238	0.00037552	-2.1456	-0.0011131	-1.4218	-0.00073763	518.8098889136849	95.14	1.3841	95.018	94.641	96.025	-0.12251					65	31	3	0	0	0	0.941	1	11736	11736		51.335	1.8939	1	1303400			14981	3525	10603	10622	16331	16331					0.09130022231261137
EVLVPRGIGP	10	Unmodified	_EVLVPRGIGP_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.8103637695312	2	518.811116	1035.60768	-0.14392	-7.4668E-05	-1.3142	-0.00068184	-1.4582	-0.00075651	518.8102552827737	95.189	1.2171	95.037	94.71	95.927	-0.15186					63	27	3	0	0	0	1.0393	1	11744	11744		40.778	5.1599	1	1305800			14982	3525	10603	10622	16332	16332					0.09130022231261137
EVLVPRGIGP	10	Unmodified	_EVLVPRGIGP_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.810546875	2	518.811116	1035.60768	-0.10573	-5.4855E-05	-1.6166	-0.00083871	-1.7223	-0.00089357	518.8102584233533	96.78	1.672	96.619	96.044	97.716	-0.16106					89	37	4	0	0	0	1.0393	1	11958	11958		40.778	1.972	1	1585600			14983	3525	10603	10622	16333	16333					0.09130022231261137
EVLVTHVQP	9	Unmodified	_EVLVTHVQP_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7686462402344	2	511.287474	1020.5604	0.028066	1.435E-05	0.62977	0.00032199	0.65783	0.00033634	511.2878529013254	58.692	0.92558	58.511	58.228	59.153	-0.18133					34	22	2	0	0	0	0.023837	1	6434	6434		54.776	19.158	1	1453900	+		14984	28263;19723	10604	10623	16334	16334					0.05093742960286818
EVLWKAYLG	9	Unmodified	_EVLWKAYLG_					0	0	0			REV__ENSG00000184014|ENST00000328194|DENND5A	REV__ENSG00000184014|ENST00000328194|DENND5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3084106445312	2	539.800217	1077.58588	-0.26438	-0.00014271	-1.5774	-0.00085147	-1.8418	-0.00099419	539.7991476453553	71.798	0.7997	71.808	71.69	72.489	0.0097733					30	20	2	0	0	0	0.024535	1	8745	8745		12.207	5.0135	1	405270	+		14985	27631	10605	10624	16335	16335					0.050192174826861446
EVLWKAYLG	9	Unmodified	_EVLWKAYLG_					0	0	0			REV__ENSG00000184014|ENST00000328194|DENND5A	REV__ENSG00000184014|ENST00000328194|DENND5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.800217	1077.58588	-0.033464	-1.8064E-05	-2.4282	-0.0013107	-2.4617	-0.0013288	539.7986016273982	71.612	0.48959	71.612	71.415	71.904	0	-0.084576	-0.00048902	NaN	12.207	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344040	+		14986	27631	10605	10624							0.050192174826861446
EVLWKAYLG	9	Unmodified	_EVLWKAYLG_					0	0	0			REV__ENSG00000184014|ENST00000328194|DENND5A	REV__ENSG00000184014|ENST00000328194|DENND5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.800217	1077.58588	-0.06892	-3.7203E-05	-2.2807	-0.0012311	-2.3496	-0.0012683	539.7987464127534	71.958	0.74944	71.67	71.464	72.214	-0.28858	-0.026859	-0.00032978	NaN	12.207	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1694000	+		14987	27631	10605	10624							0.050192174826861446
EVLWLPCTTG	10	Unmodified	_EVLWLPCTTG_					0	0	0		ENST00000406316.6_3_2:51255552-51255684:-|nuORF	ENST00000406316.6_3_2:51255552-51255684:-|nuORF	ENST00000406316.6_3_2:51255552-51255684:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.298828125	2	559.781167	1117.54778	-1.0641	-0.00059567	-3.9623	-0.002218	-5.0264	-0.0028137	559.7789911506108	39.142	0.89275	39.166	38.492	39.385	0.023727					34	23	2	0	0	0	0.03519	1	3180	3180		32.812	0	1	223400			14988	13730	10606	10625	16336	16336					-0.006290364942742599
EVLYIIYF	8	Unmodified	_EVLYIIYF_					0	0	0			REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF	REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.8134765625	2	530.291694	1058.56883	-0.14482	-7.6799E-05	2.4862	0.0013184	2.3414	0.0012416	530.795192898885	77.924	0.63754	77.762	77.484	78.122	-0.16196					23	14	3	0	0	0	0.027866	1	9272	9272		28.254	6.2944	1	127200	+		14989	22129	10607	10626	16337	16337					0.0418929687691616
EVLYLWLIM	9	Unmodified	_EVLYLWLIM_					0	0	0		ENST00000409264.6_1_2:201741660-201747124:-|nuORF;ENST00000465823.5_1_2:201741660-201752359:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	591.3005981445312	2	590.327753	1178.64095	-0.32999	-0.0001948	3.3952	0.0020043	3.0653	0.0018095	590.3295856418468	71.374	0.52983	71.099	70.743	71.273	-0.27509					16	11	2	0	0	0	0.024541	1	8292	8292		13.775	2.9098	1	167730			14990	13771	10608	10627	16338	16338					0.05877887958968131
EVLYLWLIM	9	Unmodified	_EVLYLWLIM_					0	0	0		ENST00000409264.6_1_2:201741660-201747124:-|nuORF;ENST00000465823.5_1_2:201741660-201752359:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	590.327753	1178.64095	-0.61331	-0.00036205	3.5302	0.002084	2.9169	0.0017219	590.3297334449265	70.991	0.39555	70.991	70.828	71.223	0	-0.059397	3.3694E-05	NaN	13.775	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214920			14991	13771	10608	10627							0.05877887958968131
EVLYLWLIM	9	Unmodified	_EVLYLWLIM_					0	0	0		ENST00000409264.6_1_2:201741660-201747124:-|nuORF;ENST00000465823.5_1_2:201741660-201752359:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	590.327753	1178.64095	-0.13827	-8.1625E-05	3.3411	0.0019723	3.2028	0.0018907	590.3295394284535	71.319	0.42963	71.031	70.883	71.313	-0.28858	-0.020135	-0.0001896	NaN	13.775	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200110			14992	13771	10608	10627							0.05877887958968131
EVLYLWLIM	9	Unmodified	_EVLYLWLIM_					0	0	0		ENST00000409264.6_1_2:201741660-201747124:-|nuORF;ENST00000465823.5_1_2:201741660-201752359:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	590.327753	1178.64095	0.56834	0.00033551	2.9374	0.001734	3.5058	0.0020696	590.3292525697763	71.156	0.50009	71.167	70.896	71.396	0.010735	0.11653	-0.00066616	NaN	13.775	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210570			14993	13771	10608	10627							0.05877887958968131
EVLYLWLIM	9	Unmodified	_EVLYLWLIM_					0	0	0		ENST00000409264.6_1_2:201741660-201747124:-|nuORF;ENST00000465823.5_1_2:201741660-201752359:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	ENST00000409264.6_1_2:201741660-201747124:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	590.327753	1178.64095	0.055529	3.2781E-05	3.3867	0.0019993	3.4423	0.0020321	590.3296209961362	71.22	0.5218	71.014	70.703	71.225	-0.20613	-0.037129	-0.00013569	NaN	13.775	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116740			14994	13771	10608	10627							0.05877887958968131
EVMAAAPAR	9	Unmodified	_EVMAAAPAR_					0	0	0		ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	458.23947	914.464386	-0.33618	-0.00015405	0.87664	0.00040171	0.54046	0.00024766	458.23981472991323	25	1.1858	25	24.341	25.527	0					59	27	3	0	0	0	0.024292	1	1089	1089		40.778	20.296	1	309030			14995	15335	10609	10628	16339	16339					0.003732718485252917
EVMAAAPAR	9	Unmodified	_EVMAAAPAR_					0	0	0		ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	458.23947	914.464386	0.57448	0.00026325	-0.49418	-0.00022645	0.080295	3.6794E-05	458.2391483431643	24.858	0.75171	24.936	24.501	25.253	0.078344	-0.031883	-0.00057346	NaN	40.778	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153600			14996	15335	10609	10628							0.003732718485252917
EVMAAAPAR	9	Unmodified	_EVMAAAPAR_					0	0	0		ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.23947	914.464386	-0.45495	-0.00020848	0.27349	0.00012532	-0.18146	-8.3153E-05	458.2396806693355	25.388	0.89443	25.161	24.708	25.602	-0.22683	0.19239	0.00013009	NaN	40.778	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366710			14997	15335	10609	10628							0.003732718485252917
EVMAAAPAR	9	Unmodified	_EVMAAAPAR_					0	0	0		ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	458.23947	914.464386	-0.22245	-0.00010193	0.036051	1.652E-05	-0.1864	-8.5415E-05	458.2394463672157	24.874	1.0699	24.699	24.383	25.453	-0.17484	-0.26952	-8.7512E-05	NaN	40.778	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305640			14998	15335	10609	10628							0.003732718485252917
EVMAAAPAR	9	Unmodified	_EVMAAAPAR_					0	0	0		ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENST00000485963.5_1_22:21152870-21213097:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.23947	914.464386	1.2519	0.00057365	-1.321	-0.00060533	-0.069129	-3.1677E-05	458.2388894175802	25.131	0.60469	24.96	24.513	25.118	-0.17151	-0.0085521	-0.0013312	NaN	40.778	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206580			14999	15335	10609	10628							0.003732718485252917
EVMDSGSQLI	10	Unmodified	_EVMDSGSQLI_					0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3084106445312	2	539.757889	1077.50123	-0.12296	-6.6366E-05	-1.4423	-0.0007785	-1.5653	-0.00084487	539.7565078903622	72.512	0.6488	72.522	72.169	72.818	0.0097733					28	15	3	0	0	0	0.03519	1	8745	8745		17.468	0.10304	1	130050	+	+	15000	19579	10610	10629	16340	16340					-0.034425211161988045
EVMFAMKQFE	10	Unmodified	_EVMFAMKQFE_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	630.2920532226562	2	630.293585	1258.57262	0.89712	0.00056545	-3.8945	-0.0024547	-2.9974	-0.0018892	630.2909075498125	17.31	0.30138	17.156	17.007	17.308	-0.15403					14	5	3	0	0	0	1.0639	1	167	167		25.574	0	1	123250			15001	3841	10611	10630	16341	16341					-0.04632724683210654
EVMLGSEPAM	10	Unmodified	_EVMLGSEPAM_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8026123046875	2	532.24356	1062.47257	-0.8326	-0.00044315	-1.9799	-0.0010538	-2.8125	-0.0014969	532.2424109813793	79.386	0.62595	79.386	79.16	79.786	0					19	12	2	0	0	0	0.03519	1	9840	9840		26.693	0	1	96124			15002	4640	10612	10631	16342	16342					-0.05616962017006699
EVMLLWGGI	9	Unmodified	_EVMLLWGGI_					0	0	0			REV__REV3L|p.R1925W|1|0.21|ENSG00000009413|chr6:111368015-111368015|G/A|missense_variant	REV__REV3L|p.R1925W|1|0.21|ENSG00000009413|chr6:111368015-111368015|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.75238037109375	2	509.275521	1016.53649	-0.634	-0.00032288	-1.04	-0.00052966	-1.674	-0.00085254	509.2742293885044	43.527	0.75977	43.385	42.919	43.679	-0.14109					43	20	3	0	0	0	0.024258	1	4084	4084		44.531	0	1	414590	+		15003	37435	10613	10632	16343	16343					0.02888186202255838
EVMSSHFSV	9	Unmodified	_EVMSSHFSV_					0	0	0		nc|ENSG00000184908|P51801-2|CLCNKB;nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA;ENSG00000184908|ENST00000375679|CLCNKB	nc|ENSG00000184908|P51801-2|CLCNKB;nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7328491210938	2	511.734217	1021.45388	0.43036	0.00022023	0.20747	0.00010617	0.63783	0.0003264	511.73610922398547	59.396	0.24215	59.214	59.153	59.395	-0.18134					8	5	2	0	0	0	0.024381	1	6558	6558		15.642	0	1	62959			15004	18587;9380	10614	10633	16344	16344					-0.05598755596531646
EVMSTVHISSV	11	Unmodified	_EVMSTVHISSV_					0	0	0		nc|ENSG00000154040|O75952-6|CABYR;nc|ENSG00000154040|O75952-2|CABYR;nc|ENSG00000154040|O75952|CABYR	nc|ENSG00000154040|O75952-6|CABYR	nc|ENSG00000154040|O75952-6|CABYR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.2596435546875	2	594.800088	1187.58562	-0.51083	-0.00030384	-0.79161	-0.00047085	-1.3024	-0.00077469	594.7992547453003	76.357	0.51337	76.188	76.054	76.567	-0.16853					17	11	2	0	0	0	0.024795	1	9076	9076		60.118	10.085	1	110610			15005	18391	10615	10634	16345	16345					-0.0006657029946381954
EVMTSVEKP	9	Unmodified	_EVMTSVEKP_					0	0	0			REV__ENSG00000133454|ENST00000335473|MYO18B	REV__ENSG00000133454|ENST00000335473|MYO18B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.77117919921875	2	510.257525	1018.5005	-0.64043	-0.00032678	-1.7297	-0.00088261	-2.3702	-0.0012094	510.2559233913525	84.329	0.62853	84.356	84.119	84.748	0.026558					19	14	2	0	0	0	0.023417	1	10469	10469		68.787	19.345	1	190030	+		15006	23373	10616	10635	16346	16346					-0.00801315765261279
EVNAATLLL	9	Unmodified	_EVNAATLLL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197133595-197135096|458|10.93|0.58|4.23|-|2|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7550354003906	2	472.276575	942.538597	0.74526	0.00035197	1.1675	0.00055138	1.9127	0.00090335	472.2768535691795	39.424	0.54831	39.424	39.112	39.661	0					38	15	3	0	0	0	0.024294	1	3415	3415		55.504	14.726	1	1554100			15007	1335	10617	10636	16347	16347					0.06502938211713172
EVNDLDNYMPE	11	Unmodified	_EVNDLDNYMPE_					0	0	0		nc|ENSG00000146276|P24046-3|GABRR1;nc|ENSG00000146276|P24046-2|GABRR1;ENSG00000146276|ENST00000454853|GABRR1	nc|ENSG00000146276|P24046-3|GABRR1	nc|ENSG00000146276|P24046-3|GABRR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.7432861328125	3	446.855459	1337.54455	0.1653	7.3865E-05	-1.4223	-0.00063558	-1.257	-0.00056171	446.85507344197373	22.323	0.14575	22.121	22.048	22.194	-0.20199					4	2	2	0	0	0	0.024735	1	748	748		21.78	2.5177	1	3908.1			15008	5871	10618	10637	16348	16348					-0.11072376129618533
EVNERENF	8	Unmodified	_EVNERENF_					0	0	0			REV__nc|ENSG00000132485|O95218-2|ZRANB2	REV__nc|ENSG00000132485|O95218-2|ZRANB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7565307617188	2	518.738345	1035.46214	-0.40781	-0.00021155	-2.8865	-0.0014973	-3.2943	-0.0017089	518.7362635000387	35.403	0.19981	35.216	35.1	35.3	-0.18675					7	4	2	0	0	0	0.027866	1	2658	2658		51.335	8.861	1	41397	+		15009	23286	10619	10638	16349	16349					-0.054174853555878144
EVNERENF	8	Unmodified	_EVNERENF_					0	0	0			REV__nc|ENSG00000132485|O95218-2|ZRANB2	REV__nc|ENSG00000132485|O95218-2|ZRANB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.738345	1035.46214	-0.77528	-0.00040217	-4.6796	-0.0024275	-5.4549	-0.0028297	518.7359725612652	34.829	0.34818	34.807	34.593	34.941	-0.021767	-0.15694	0.00010189	NaN	51.335	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62308	+		15010	23286	10619	10638							-0.054174853555878144
EVNERENF	8	Unmodified	_EVNERENF_					0	0	0			REV__nc|ENSG00000132485|O95218-2|ZRANB2	REV__nc|ENSG00000132485|O95218-2|ZRANB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.738345	1035.46214	-0.9927	-0.00051495	-5.2721	-0.0027349	-6.2648	-0.0032498	518.7354666579605	34.818	0.33346	34.868	34.723	35.056	0.050251	-0.095657	-0.00051283	NaN	51.335	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99280	+		15011	23286	10619	10638							-0.054174853555878144
EVNGKATIT	9	Unmodified	_EVNGKATIT_					0	0	0			REV__ENST00000454907.1_1_6:167115266-167115902:-|nuORF	REV__ENST00000454907.1_1_6:167115266-167115902:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8031311035156	2	466.756007	931.497461	0.35777	0.00016699	-0.587	-0.00027398	-0.22923	-0.00010699	466.7559969373201	32.251	0.52193	32.058	31.771	32.293	-0.19262					14	11	2	0	0	0	0.024319	1	2218	2218		47.657	0	1	53468	+		15012	32774	10620	10639	16350	16350					0.02897177172224019
EVNGQRGYVP	10	Unmodified	_EVNGQRGYVP_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.8169555664062	2	559.783087	1117.55162	-0.47589	-0.00026639	-0.27792	-0.00015558	-0.75381	-0.00042197	559.7828127354766	37.95	0.4087	37.771	37.593	38.002	-0.17929					26	11	3	0	0	0	0.03519	1	3086	3086		19.997	0	1	461310			15013	9201	10621	10640	16351	16351					-0.0024523067620521033
EVNHNTHW	8	Unmodified	_EVNHNTHW_					0	0	0		ENST00000418058.1_1_1:65280440-65280524:+|nuORF;ENST00000294428.7_1_1:65280416-65296531:+|nuORF	ENST00000418058.1_1_1:65280440-65280524:+|nuORF	ENST00000418058.1_1_1:65280440-65280524:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.80908203125	2	518.733397	1035.45224	-0.61726	-0.00032019	0.47422	0.00024599	-0.14304	-7.4201E-05	518.7332095056502	38.157	0.2908	37.938	37.792	38.083	-0.21849					15	8	3	0	0	0	0.027866	1	3097	3097		35.201	0	1	133710			15014	11816	10622	10641	16352	16352					-0.06406628570289286
EVNILNLEP	9	Unmodified	_EVNILNLEP_					0	0	0			REV__ENST00000503126.1_1_5:179133324-179137021:+|nuORF	REV__ENST00000503126.1_1_5:179133324-179137021:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7804565429688	2	520.784764	1039.55498	-0.46525	-0.0002423	3.3247	0.0017315	2.8594	0.0014892	520.7860849311708	85.498	0.3755	85.44	85.228	85.603	-0.05761					13	8	2	0	0	0	0.024428	1	10708	10708		47.96	9.2059	1	93226	+		15015	33947	10623	10642	16353	16353					0.03678019377821329
EVNILNLEP	9	Unmodified	_EVNILNLEP_					0	0	0			REV__ENST00000503126.1_1_5:179133324-179137021:+|nuORF	REV__ENST00000503126.1_1_5:179133324-179137021:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7808227539062	2	520.784764	1039.55498	-0.94976	-0.00049462	2.6455	0.0013777	1.6957	0.00088312	520.7862820556259	85.464	0.41441	85.49	85.285	85.699	0.025528					16	9	2	0	0	0	0.024283	1	10657	10657		56.434	17.68	1	102270	+		15016	33947	10623	10642	16354	16354					0.03678019377821329
EVNKRPIFI	9	Unmodified	_EVNKRPIFI_					0	0	0			REV__ENST00000507678.5_1_4:177243228-177249478:+|nuORF	REV__ENST00000507678.5_1_4:177243228-177249478:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.3322143554688	2	558.332216	1114.64988	0.46282	0.00025841	-0.63185	-0.00035278	-0.16903	-9.4375E-05	558.3317503544573	59.292	0.9045	59.11	58.831	59.736	-0.18134					61	22	4	0	0	0	0.53979	1	6563	6563		56.721	3.7844	1	5394800	+		15017	34052	10624	10643	16355	16355					0.0971399763966474
EVNLESHVQ	9	Unmodified	_EVNLESHVQ_					0	0	0		ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3181762695312	2	527.76182	1053.50909	-1.1123	-0.00058701	0.81316	0.00042916	-0.29909	-0.00015785	527.761681715895	39.338	0.42815	39.239	38.983	39.411	-0.098755					18	11	2	0	0	0	0.024418	1	3346	3346		45.972	15.469	1	176320			15018	10164	10625	10644	16356	16356					-0.015526258044474162
EVNLESHVQ	9	Unmodified	_EVNLESHVQ_					0	0	0		ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.318115234375	2	527.76182	1053.50909	-0.73885	-0.00038994	-0.2901	-0.0001531	-1.029	-0.00054304	527.7614817385047	39.592	0.45549	39.616	39.385	39.84	0.023727					16	12	2	0	0	0	0.024484	1	3350	3350		30.318	6.115	1	167400			15019	10164	10625	10644	16357	16357					-0.015526258044474162
EVNLESHVQ	9	Unmodified	_EVNLESHVQ_					0	0	0		ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.76182	1053.50909	-0.56851	-0.00030004	7.3189	0.0038626	6.7504	0.0035626	528.2674912785512	39.916	0.48683	39.766	39.591	40.078	-0.1497	0.18265	0.004769	NaN	54.776	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88983			15020	10164	10625	10644							-0.015526258044474162
EVNLESHVQ	9	Unmodified	_EVNLESHVQ_					0	0	0		ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.76182	1053.50909	-0.59673	-0.00031493	7.716	0.0040722	7.1193	0.0037573	527.7650667172968	40.103	0.61177	39.872	39.546	40.158	-0.23021	0.28876	0.0051882	NaN	54.776	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102910			15021	10164	10625	10644							-0.015526258044474162
EVNMINKKL	9	Unmodified	_EVNMINKKL_					0	0	0			REV__ENST00000435989.6_1_19:58385349-58385952:-|nuORF	REV__ENST00000435989.6_1_19:58385349-58385952:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3242797851562	2	544.810259	1087.60597	-0.48805	-0.00026589	-3.2333	-0.0017615	-3.7213	-0.0020274	544.8082408043958	68.758	0.34489	68.465	68.251	68.596	-0.29267					11	8	2	0	0	0	0.024418	1	8196	8196		30.318	0	1	485920	+		15022	32453	10626	10645	16358	16358					0.06566645150996919
EVNPSRKLL	9	Unmodified	_EVNPSRKLL_					0	0	0			REV__ENSG00000183066|ENST00000328823|WBP2NL	REV__ENSG00000183066|ENST00000328823|WBP2NL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3128662109375	2	528.314023	1054.61349	0.21443	0.00011328	0.32365	0.00017099	0.53808	0.00028428	528.3143449651923	97.311	1.1074	97.32	96.663	97.77	0.0089111					50	24	3	0	0	0	0.80003	1	12384	12384		39.253	0.44669	1	240920	+		15023	27533	10627	10646	16359	16359					0.08837120742964544
EVNPSRKLL	9	Unmodified	_EVNPSRKLL_					0	0	0			REV__ENSG00000183066|ENST00000328823|WBP2NL	REV__ENSG00000183066|ENST00000328823|WBP2NL	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	528.314023	1054.61349	0.21443	0.00011328	0.32365	0.00017099	0.53808	0.00028428	528.3143449651923	97.311	1.1074	97.32	96.663	97.77	0.0089111	0.04198	-0.0001477	NaN	39.253	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240920	+		15024	27533	10627	10646							0.08837120742964544
EVNVIEHGF	9	Unmodified	_EVNVIEHGF_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.30615234375	2	522.261456	1042.50836	-0.73907	-0.00038599	3.8692	0.0020207	3.1301	0.0016347	522.263276406153	46.818	0.95474	46.665	46.098	47.052	-0.15301					60	25	3	0	0	0	0.024495	1	4687	4687		19.997	0	1	569600	+		15025	27223	10628	10647	16360	16360					-0.011194204534831442
EVPAPKDPE	9	Unmodified	_EVPAPKDPE_					0	0	0			REV__ENSG00000139970|ENST00000267484|RTN1	REV__ENSG00000139970|ENST00000267484|RTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.79583740234375	2	491.248015	980.481476	0.39467	0.00019388	1.8776	0.00092236	2.2723	0.0011162	491.2488078632917	47.75	0.47806	47.564	47.423	47.902	-0.18684					15	12	2	0	0	0	0.024292	1	4711	4711		40.778	0	1	126050	+		15026	23975	10629	10648	16361	16361					-0.009545290646656213
EVPAPVPVDM	10	Unmodified	_EVPAPVPVDM_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2783813476562	2	527.267893	1052.52123	-0.4928	-0.00025984	1.118	0.00058948	0.62518	0.00032964	527.2682581388186	84.543	1.1593	84.543	84.171	85.331	0					63	27	4	0	0	0	0.03519	1	10626	10626		25.574	0	1	743910			15027	3030	10630	10649	16362	16362					-0.0029272538561144756
EVPEVVSP	8	Unmodified	_EVPEVVSP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;TTN|p.Q3338L|1|0.32|ENSG00000155657|chr2:178764278-178764278|T/A|missense_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.22503662109375	2	428.226551	854.438549	-0.81601	-0.00034944	-2.1781	-0.0009327	-2.9941	-0.0012821	428.22558139776544	25.679	0.92011	25.679	25.363	26.283	0					54	21	4	0	0	0	1.0574	1	1243	1243		25.45	3.4903	1	1479100			15028	6479;18400	10631	10650	16363	16363					0.005507008779090938
EVPFDVPEL	9	Unmodified	_EVPFDVPEL_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3079833984375	2	522.76604	1043.51753	-0.64494	-0.00033715	-3.6137	-0.0018891	-4.2586	-0.0022263	522.7640343277625	32.251	0.72545	32.263	31.943	32.669	0.011799					53	18	4	0	0	0	0.023596	1	2230	2230		63.306	6.5852	1	1049400			15029	5204	10632	10651	16364	16364					-0.0024907188781071454
EVPGTVGPQL	10	Unmodified	_EVPGTVGPQL_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.77142333984375	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	1.118	1	13126	13126		30.318	1.1682	1	3882100			15030	8838	10633	10652	16365	16365					0.030817502063428037
EVPLERVGF	9	Unmodified	_EVPLERVGF_					0	0	0			REV__nc|ENSG00000166596|Q8N1V2-2|CFAP52	REV__nc|ENSG00000166596|Q8N1V2-2|CFAP52	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.8391723632812	2	523.287474	1044.5604	0.14881	7.7868E-05	2.8302	0.001481	2.979	0.0015589	523.2889273478328	61.194	0.60542	61.265	60.985	61.59	0.071125					19	15	2	0	0	0	0.02435	1	6957	6957		42.396	0	1	288070	+		15031	35470	10634	10653	16366	16366					0.039897429602888224
EVPLEVSTN	9	Unmodified	_EVPLEVSTN_					0	0	0			REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF	REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2872009277344	2	494.253297	986.492041	-0.56127	-0.00027741	0.17338	8.5693E-05	-0.38789	-0.00019171	494.25362659353664	30.075	0.56828	30.084	29.637	30.205	0.0086708					21	13	3	0	0	0	0.024374	1	1856	1856		32.812	6.1195	1	82046	+		15032	25150	10635	10654	16367	16367					-0.0017454641022141004
EVPLPGGGPQ	10	Unmodified	_EVPLPGGGPQ_					0	0	0		ENST00000308521.9_1_22:39436713-39436776:+|nuORF	ENST00000308521.9_1_22:39436713-39436776:+|nuORF	ENST00000308521.9_1_22:39436713-39436776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7878112792969	2	475.750724	949.486896	0.27749	0.00013202	0.75644	0.00035988	1.0339	0.0004919	475.7507804132667	59.523	0.48118	59.609	59.351	59.833	0.085686					20	12	2	0	0	0	0.03519	1	6714	6714		49.442	13.823	1	298650			15033	12032	10636	10655	16368	16368					0.010131945178159185
EVPLPIVLL	9	Unmodified	_EVPLPIVLL_					0	0	0			REV__nc|ENSG00000148219|O75129-2|ASTN2	REV__nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.29541015625	2	496.823161	991.631769	-0.28617	-0.00014218	-2.6761	-0.0013296	-2.9623	-0.0014717	496.8217543972656	40.723	0.54894	40.746	40.562	41.111	0.023006					23	15	2	0	0	0	0.024354	1	3611	3611		30.504	0	1	435570	+		15034	24599	10637	10656	16369	16369					0.13561862664937507
EVPQIDVPN	9	Unmodified	_EVPQIDVPN_					0	0	0		ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.32403564453125	2	505.761289	1009.50803	-0.39594	-0.00020025	2.1221	0.0010733	1.7261	0.00087301	506.2624014506702	79.046	0.66639	78.874	78.484	79.15	-0.17225					22	15	2	0	0	0	0.024397	1	9749	9749		31.53	1.2121	1	75908			15035	937	10638	10657	16370	16370					0.0036515982666287528
EVPRELQMH	9	Unmodified	_EVPRELQMH_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.267578125	2	569.787315	1137.56008	1.6965	0.00096666	-0.75738	-0.00043155	0.93915	0.00053511	570.2870629799836	23.337	0.22492	23.146	22.942	23.167	-0.19117					10	4	3	0	0	0	0.024495	1	874	874		26.693	4.733	1	34965			15036	9027	10639	10658	16371	16371					-0.0032000003122902854
EVPSDWEVD	9	Unmodified	_EVPSDWEVD_					0	0	0		nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35732760-35733244:+|nuORF	nc|ENSG00000107175|O43889-3|CREB3	nc|ENSG00000107175|O43889-3|CREB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2952270507812	2	538.232561	1074.45057	-0.48714	-0.0002622	0.73527	0.00039575	0.24812	0.00013355	538.2328293221891	56.558	0.62652	56.39	56.124	56.751	-0.1672					35	15	3	0	0	0	0.024457	1	6113	6113		29.15	0	1	1139700			15037	2829	10640	10659	16372	16372					-0.08367727169547834
EVPSPKVIKTP	11	Unmodified	_EVPSPKVIKTP_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8565673828125	2	597.858264	1193.70197	-1.8915	-0.0011309	-1.6048	-0.00095944	-3.4963	-0.0020903	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0075	1	11573	11573		35.152	0.97948	1	5655800			15038	4706	10641	10660	16373	16373					0.11287116262769814
EVPTIVGLLKH	11	Unmodified	_EVPTIVGLLKH_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7|TTC41P	REV__nc|ENSG00000214198|Q6P2S7|TTC41P	MSMS	OPSCC_40_ClassI_Rep-3	6	603.3673706054688	2	603.366256	1204.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.03	1	101.86	101.36	102.36	-0.17178								0	0	0	1.3062	1	12658	12658		25.574	0	1		+		15039	37130	10642	10661	16374	16374					0.12378822499658781
EVPTRTKLA	9	Unmodified	_EVPTRTKLA_					0	0	0			REV__GUCY2D|p.G868R|1|0.58|ENSG00000132518|chr17:8014884-8014884|G/A|missense_variant	REV__GUCY2D|p.G868R|1|0.58|ENSG00000132518|chr17:8014884-8014884|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7998962402344	2	507.800749	1013.58694	-0.40153	-0.0002039	-0.65124	-0.0003307	-1.0528	-0.0005346	507.800441579446	31.14	1.3588	30.987	30.681	32.04	-0.15231					84	33	5	0	0	0	0.23085	1	2051	2051		84.916	5.4645	1	12632000	+		15040	36087	10643	10662	16375	16375					0.08069431851595255
EVPYKDSQL	9	Unmodified	_EVPYKDSQL_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3341064453125	2	539.774396	1077.53424	-1.6742	-0.0009037	3.1742	0.0017133	1.4999	0.00080963	540.2760821224023	79.75	0.3809	79.578	79.399	79.78	-0.17226					10	8	2	0	0	0	0.023274	1	9862	9862		98.629	21.312	1	34803			15041	5481	10644	10663	16376	16376					-0.001425710018565951
EVQAFLSLL	9	Unmodified	_EVQAFLSLL_					0	0	0		ENSG00000204710|ENST00000377185|SPDYC;chr11:65171499-65171943|161|14.85|0.28|5.7|+|2|SPDYC,SPDYC|1	ENSG00000204710|ENST00000377185|SPDYC	ENSG00000204710|ENST00000377185|SPDYC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.3110046386719	2	510.292225	1018.5699	0.55111	0.00028123	4.0226	0.0020527	4.5737	0.0023339	510.29435511941466	77.255	0.20403	77.013	76.873	77.077	-0.24232					7	5	2	0	0	0	0.024292	1	9185	9185		49.442	0	1	253660			15042	10373	10645	10664	16377	16377					0.061355112458159056
EVQAQLAGAV	10	Unmodified	_EVQAQLAGAV_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7834167480469	2	493.269281	984.52401	-0.35611	-0.00017566	2.2534	0.0011115	1.8973	0.00093587	493.2698005088642	82.318	0.80444	82.343	81.94	82.744	0.025711					29	18	3	0	0	0	0.03519	1	10241	10241		32.812	0	1	106710	+		15043	29117	10646	10665	16378	16378					0.031128660635772576
EVQAVEGKK	9	Unmodified	_EVQAVEGKK_					0	0	0		ENST00000550797.1_1_12:49458888-49462935:-|nuORF;ENSG00000167550|ENST00000301068|RHEBL1	ENST00000550797.1_1_12:49458888-49462935:-|nuORF	ENST00000550797.1_1_12:49458888-49462935:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3293762207031	2	494.277106	986.53966	3.3665	0.001664	-1.3931	-0.00068857	1.9734	0.00097541	494.2761671762497	18.276	0.29983	18.033	17.875	18.175	-0.24256					8	5	2	0	0	0	0.024477	1	267	267		27.882	6.9353	1	19895			15044	7699	10647	10666	16379	16379					0.04585152580625618
EVQDLVKEL	9	Unmodified	_EVQDLVKEL_					0	0	0			REV__ENSG00000104381|ENST00000220822|GDAP1;REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7981567382812	2	536.797872	1071.58119	-0.60393	-0.00032419	0.37532	0.00020147	-0.22861	-0.00012272	536.7983116521777	66.244	0.84967	65.962	65.56	66.409	-0.28148					70	24	5	0	0	0	0.014034	1	7859	7859		166.68	4.4261	1	40802000	+		15045	21443;34376	10648	10667	16380	16380					0.0482628854927043
EVQDLVKEL	9	Unmodified	_EVQDLVKEL_					0	0	0			REV__ENSG00000104381|ENST00000220822|GDAP1;REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.7977294921875	2	536.797872	1071.58119	-0.76281	-0.00040947	0.42899	0.00023028	-0.33382	-0.00017919	536.7983092089328	66.032	1.2739	66.062	65.587	66.861	0.030106					82	35	5	0	0	0	0.03201	1	7751	7751		139.97	3.7024	1	33628000	+		15046	21443;34376	10648	10667	16381	16381					0.0482628854927043
EVQEHLQNRR	10	Unmodified	_EVQEHLQNRR_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-13|DMD;DMD|p.Q2573K|1|0.31|ENSG00000198947|chrX:31679530-31679530|G/T|missense_variant;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-16|DMD	nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-15|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.89794921875	3	436.897092	1307.66945	-0.18971	-8.2885E-05	2.3937	0.0010458	2.204	0.00096292	436.8980078750038	33.68	0.91255	33.449	33.114	34.026	-0.23107					69	22	5	0	0	0	1.0975	1	2414	2414		33.039	4.4627	1	2018100			15047	10259;18652	10649	10668	16382	16382					0.027917219124674375
EVQETQPP	8	Unmodified	_EVQETQPP_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.27886962890625	2	464.224539	926.434526	-0.55008	-0.00025536	-2.3712	-0.0011008	-2.9213	-0.0013561	464.22357724909756	51.797	0.54422	51.65	51.336	51.881	-0.14735					22	15	2	0	0	0	0.027866	1	5479	5479		23.042	5.6775	1	141950	+		15048	25638	10650	10669	16383	16383					-0.03163388615803342
EVQFIQLAKDF	11	Unmodified	_EVQFIQLAKDF_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.26171875	3	446.574844	1336.7027	-0.2619	-0.00011696	1.7372	0.0007758	1.4753	0.00065884	446.57583898209464	26.199	0.24068	26.199	26.124	26.365	0					6	5	2	0	0	0	0.024789	1	1309	1309		26.75	21.337	1	35067			15049	6893	10651	10670	16384	16384					0.04781910911810883
EVQGSALML	9	Unmodified	_EVQGSALML_					0	0	0		nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.24420166015625	2	474.24696	946.479368	-0.1436	-6.8101E-05	-3.3747	-0.0016004	-3.5183	-0.0016685	474.24528555569225	45.76	0.99561	45.608	45.178	46.174	-0.15156					69	28	4	0	0	0	0.31037	1	4451	4451		74.255	0.28031	1	2968300			15050	2762	10652	10671	16385	16385					0.003987189258737089
EVQGSALML	9	Unmodified	_EVQGSALML_					0	0	0		nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	474.24696	946.479368	0.61346	0.00029093	-4.0669	-0.0019287	-3.4534	-0.0016378	474.24492533169257	45.628	0.98236	45.628	45.181	46.163	0	-0.017163	-0.00058934	NaN	74.255	79	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3335500			15051	2762	10652	10671							0.003987189258737089
EVQGSALML	9	Unmodified	_EVQGSALML_					0	0	0		nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	474.24696	946.479368	0.14195	6.732E-05	-3.5167	-0.0016678	-3.3748	-0.0016005	474.2451546604665	45.619	1.0865	45.663	45.247	46.334	0.043877	0.01726	-6.7517E-05	NaN	74.255	77	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3910300			15052	2762	10652	10671							0.003987189258737089
EVQGSALML	9	Unmodified	_EVQGSALML_					0	0	0		nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.24696	946.479368	0.28052	0.00013304	-3.2166	-0.0015255	-2.9361	-0.0013924	474.24524940928427	45.738	0.45953	45.641	45.427	45.887	-0.096649	-0.0041334	0.0002171	NaN	74.255	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279050			15053	2762	10652	10671							0.003987189258737089
EVQGSALML	9	Unmodified	_EVQGSALML_					0	0	0		nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	474.24696	946.479368	-0.14653	-6.9492E-05	-3.1381	-0.0014882	-3.2846	-0.0015577	474.2452424353734	45.967	0.4439	45.706	45.486	45.93	-0.26118	0.060652	0.00029162	NaN	74.255	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398800			15054	2762	10652	10671							0.003987189258737089
EVQGSALML	9	Unmodified	_EVQGSALML_					0	0	0		nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	nc|ENSG00000106123|O15197-3|EPHB6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	474.24696	946.479368	-0.90316	-0.00042832	-2.6663	-0.0012645	-3.5694	-0.0016928	474.2455336404476	45.828	0.58044	45.626	45.425	46.005	-0.20226	-0.019365	0.00073911	NaN	74.255	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600400			15055	2762	10652	10671							0.003987189258737089
EVQKDIKNI	9	Unmodified	_EVQKDIKNI_					0	0	0		ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENST00000432228.1_1_2:222826463-222827672:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8103637695312	2	543.811313	1085.60807	-1.1813	-0.00064241	0.049479	2.6907E-05	-1.1318	-0.0006155	543.8112982707287	44.225	1.2411	43.981	43.593	44.835	-0.2444					88	32	5	0	0	0	0.012922	1	4080	4080		172.25	19.213	1	9275500			15056	14199	10653	10672	16386	16386					0.06869397160471635
EVQKDIKNI	9	Unmodified	_EVQKDIKNI_					0	0	0		ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENST00000432228.1_1_2:222826463-222827672:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8103637695312	2	543.811313	1085.60807	-1.6367	-0.00089008	0.63912	0.00034756	-0.99763	-0.00054252	543.811625998734	44.239	1.0666	44.019	43.562	44.628	-0.21939					74	28	4	0	0	0	0.012922	3	4115	4101;4115;4129		172.25	12.099	1	9084800			15057	14199	10653	10672	16387;16388;16389	16388					0.06869397160471635
EVQKDIKNI	9	Unmodified	_EVQKDIKNI_					0	0	0		ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENST00000432228.1_1_2:222826463-222827672:+|nuORF	ENST00000432228.1_1_2:222826463-222827672:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.811313	1085.60807	-1.7886	-0.00097266	-0.39052	-0.00021237	-2.1791	-0.001185	543.8111988211305	44.235	0.39996	44.09	43.994	44.394	-0.14471	0.089828	-0.00060813	NaN	172.25	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202520			15058	14199	10653	10672							0.06869397160471635
EVQLKVGLF	9	Unmodified	_EVQLKVGLF_					0	0	0			REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF	REV__ENST00000608609.1_1_2:97477994-97479367:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.8184814453125	2	516.808042	1031.60153	-0.034282	-1.7717E-05	-0.93471	-0.00048307	-0.969	-0.00050078	516.8072660055893	67.766	0.58207	67.528	67.245	67.827	-0.23814					19	13	2	0	0	0	0.024466	1	7764	7764		12.207	5.0135	1	293510	+		15059	35972	10654	10673	16390	16390					0.08699503999741864
EVQLPDRGWF	10	Unmodified	_EVQLPDRGWF_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE	nc|ENSG00000119912|P14735-2|IDE	nc|ENSG00000119912|P14735-2|IDE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2206115722656	3	416.212017	1245.61422	1.8714	0.00077891	-3.2973	-0.0013724	-1.4259	-0.00059349	416.2105747813511	24.882	0.1771	24.71	24.599	24.777	-0.17151					5	3	2	0	0	0	0.03519	1	1086	1086		42.864	5.3561	1	26159			15060	3773	10655	10674	16391	16391					0.0012391539198688406
EVQNPSPLM	9	Unmodified	_EVQNPSPLM_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8004150390625	2	507.749867	1013.48518	-0.42398	-0.00021528	-0.45807	-0.00023258	-0.88205	-0.00044786	507.749638523141	31.441	0.57521	31.255	30.945	31.52	-0.18503					26	14	3	0	0	0	0.022411	1	2058	2058		90.37	24.567	1	189740	+		15061	29220	10656	10675	16392	16392					-0.021021825624416124
EVQQHLMGV	9	Oxidation (M)	_EVQQHLM(Oxidation (M))GV_		EVQQHLM(1)GV		EVQQHLM(77)GV	0	0	1			REV__nc|ENSG00000182923|Q96MT8-2|CEP63	REV__nc|ENSG00000182923|Q96MT8-2|CEP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2625732421875	2	528.760766	1055.50698	-0.46439	-0.00024555	1.6289	0.00086127	1.1645	0.00061572	528.7612036648931	100.22	1.0681	100.22	100.01	101.08	0					30	25	2	0	0	0	0.29158	1	12825	12825		76.774	13.468	1	220260	+		15062	27520	10657	10676	16393	16393		815			-0.018553778138993948
EVQQHLMGV	9	Oxidation (M)	_EVQQHLM(Oxidation (M))GV_					0	0	1			REV__nc|ENSG00000182923|Q96MT8-2|CEP63	REV__nc|ENSG00000182923|Q96MT8-2|CEP63	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	528.760766	1055.50698	-0.46439	-0.00024555	1.6289	0.00086127	1.1645	0.00061572	528.7612036648931	100.22	1.0681	100.22	100.01	101.08	0	-0.032813	0.00034557	NaN	76.774	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220260	+		15063	27520	10657	10676				815			-0.018553778138993948
EVQQHLMGV	9	Oxidation (M)	_EVQQHLM(Oxidation (M))GV_					0	0	1			REV__nc|ENSG00000182923|Q96MT8-2|CEP63	REV__nc|ENSG00000182923|Q96MT8-2|CEP63	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	528.760766	1055.50698	-0.38267	-0.00020234	1.0327	0.00054605	0.65002	0.0003437	529.2630245578958	100.27	0.48433	100.28	100.07	100.55	0.010117	0.032813	-0.00028489	NaN	76.774	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190600	+		15064	27520	10657	10676				815			-0.018553778138993948
EVQRAPHNGFL	11	Unmodified	_EVQRAPHNGFL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.22235107421875	3	423.222916	1266.64692	-0.62675	-0.00026526	-0.18264	-7.7298E-05	-0.8094	-0.00034255	423.222814943719	29.453	1.275	29.456	29.092	30.367	0.0031357					44	31	2	0	0	0	1.0327	1	1792	1792		29.551	0	1	1521100			15065	8381	10658	10677	16394	16394					0.024261225148620724
EVQRFITLL	9	Unmodified	_EVQRFITLL_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.7393798828125	2	559.832049	1117.64954	-0.10828	-6.0617E-05	1.2181	0.00068192	1.1098	0.0006213	559.8316231427003	78.822	0.47048	78.666	78.427	78.897	-0.15591					16	10	2	0	0	0	0.024427	1	9422	9422		42.396	0	1	141850			15066	1500	10659	10678	16395	16395					0.09542577919796713
EVQRFITLL	9	Unmodified	_EVQRFITLL_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.832049	1117.64954	0.21951	0.00012289	0.73667	0.00041241	0.95618	0.0005353	559.831709533564	78.898	0.38749	78.667	78.433	78.82	-0.23141	-0.090969	0.00052698	NaN	34.173	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141850			15067	1500	10659	10678							0.09542577919796713
EVQRSQVL	8	Unmodified	_EVQRSQVL_					0	0	0		nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.76953125	2	479.769448	957.524344	0.59912	0.00028744	-0.44102	-0.00021159	0.1581	7.5851E-05	479.76887863983865	51.709	1.3949	51.709	50.956	52.351	0					91	38	3	0	0	0	0.42912	1	5500	5500		93.195	2.4188	1	4926300			15068	8002	10660	10679	16396	16396					0.04388285783431911
EVQTLLLAP	9	Unmodified	_EVQTLLLAP_					0	0	0		nc|ENSG00000133706|Q9P2J5-3|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508709.1_1_5:145508626-145509697:-|nuORF	nc|ENSG00000133706|Q9P2J5-3|LARS1	nc|ENSG00000133706|Q9P2J5-3|LARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2626037597656	2	492.292225	982.569897	0.11225	5.526E-05	-0.17553	-8.6412E-05	-0.063279	-3.1152E-05	492.29203895846484	71.358	0.45804	71.096	70.824	71.282	-0.26199					20	10	2	0	0	0	0.023817	1	8348	8348		71.296	5.4925	1	274100			15069	4726	10661	10680	16397	16397					0.07791511245795846
EVQTQMIL	8	Unmodified	_EVQTQMIL_					0	0	0		ENST00000478403.5_1_2:242436769-242438604:-|nuORF	ENST00000478403.5_1_2:242436769-242438604:-|nuORF	ENST00000478403.5_1_2:242436769-242438604:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.269287109375	2	481.254785	960.495018	0.020503	9.8674E-06	2.6441	0.0012725	2.6646	0.0012824	481.25595304473416	31.042	0.24582	30.801	30.669	30.915	-0.24109					6	5	2	0	0	0	0.027866	1	2017	2017		93.195	24.409	1	42116			15070	15147	10662	10681	16398	16398					0.013190054429401243
EVQVALKSP	9	Unmodified	_EVQVALKSP_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7821350097656	2	485.782025	969.549496	2.2886	0.0011118	-2.3353	-0.0011345	-0.046731	-2.2701E-05	485.780691685972	24.389	0.74083	24.209	23.893	24.634	-0.18089					45	16	4	0	0	0	0.16468	1	1033	1033		96.19	5.4138	1	971480	+		15071	26887	10663	10682	16399	16399					0.06350340585993308
EVQVGSVV	8	Unmodified	_EVQVGSVV_					0	0	0		nc|ENSG00000100461|Q86U06-5|RBM23	nc|ENSG00000100461|Q86U06-5|RBM23	nc|ENSG00000100461|Q86U06-5|RBM23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.509765625	2	408.726718	815.438883	0.29689	0.00012135	1.3028	0.00053247	1.5996	0.00065382	408.7272444305809	27.855	1.1163	27.855	27.58	28.696	0					38	27	2	0	0	0	0.027866	1	1645	1645		47.916	0	1	212910			15072	18126	10664	10683	16400	16400					0.02378120597779798
EVQVKNLLPCY	11	Unmodified	_EVQVKNLLPCY_					0	0	0		ENST00000566085.5_1_16:2506324-2506558:-|nuORF	ENST00000566085.5_1_16:2506324-2506558:-|nuORF	ENST00000566085.5_1_16:2506324-2506558:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2724304199219	3	435.900563	1304.67986	-0.40036	-0.00017452	-2.1445	-0.00093478	-2.5448	-0.0011093	435.8993941990017	34.367	1.0661	34.417	33.844	34.91	0.050251					35	26	2	0	0	0	0.024748	1	2425	2425		30.569	8.7884	1	90321			15073	16935	10665	10684	16401	16401					0.039705685227090726
EVQVKNLLPCY	11	Unmodified	_EVQVKNLLPCY_					0	0	0		ENST00000566085.5_1_16:2506324-2506558:-|nuORF	ENST00000566085.5_1_16:2506324-2506558:-|nuORF	ENST00000566085.5_1_16:2506324-2506558:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	435.900563	1304.67986	-0.027734	-1.2089E-05	-6.7787	-0.0029548	-6.8064	-0.0029669	435.8981969193971	34.999	0.12177	34.783	34.712	34.833	-0.21555	0.18313	-0.0032814	NaN	30.569	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51595			15074	16935	10665	10684							0.039705685227090726
EVQVQSLSSD	10	Unmodified	_EVQVQSLSSD_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3|KCNT1	REV__nc|ENSG00000107147|Q5JUK3|KCNT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2659301757812	2	546.264393	1090.51423	-0.91988	-0.0005025	2.231	0.0012187	1.3111	0.00071623	546.265642390416	26.228	1.6264	25.992	25.803	27.429	-0.23603					107	41	4	0	0	0	1.0816	1	1357	1357		35.152	0	1	26288000	+		15075	36550	10666	10685	16402	16402					-0.027403667324506387
EVQVVLILA	9	Unmodified	_EVQVVLILA_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.79705810546875	2	492.310418	982.606283	0.5536	0.00027254	0.8715	0.00042905	1.4251	0.00070159	492.31140074926265	97.06	1.2809	97.069	96.313	97.594	0.0089111					48	28	3	0	0	0	0.024436	1	12394	12394		23.042	0	1	165080			15076	9413	10667	10686	16403	16403					0.11428388142519452
EVRAEDPTI	9	Unmodified	_EVRAEDPTI_					0	0	0			REV__nc|ENSG00000182054|P48735-2|IDH2	REV__nc|ENSG00000182054|P48735-2|IDH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7432861328125	2	515.264196	1028.51384	0.65328	0.00033661	4.4087	0.0022716	5.062	0.0026082	515.2655901027265	70.15	0.16527	69.857	69.754	69.92	-0.29291					6	3	2	0	0	0	0.024484	1	8442	8442		23.523	12.657	1	75570	+		15077	27446	10668	10687	16404	16404					0.0007225833833217621
EVRAGPARGR	10	Unmodified	_EVRAGPARGR_					0	0	0			REV__ENST00000359712.7_1_2:9563009-9563378:-|nuORF	REV__ENST00000359712.7_1_2:9563009-9563378:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7630004882812	2	534.804688	1067.59482	-0.52564	-0.00028111	2.3667	0.0012657	1.8411	0.00098463	534.8057148816398	49.344	0.48913	49.064	48.791	49.28	-0.27977					23	12	3	0	0	0	0.03519	1	4957	4957		23.523	0	1	535400	+		15078	30886	10669	10688	16405	16405					0.06373003891758344
EVRALAAQL	9	Unmodified	_EVRALAAQL_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7886047363281	2	485.787641	969.56073	0.28557	0.00013872	-1.1426	-0.00055508	-0.85708	-0.00041636	485.78705368688804	47.147	1.1927	46.994	46.445	47.637	-0.15301					74	32	4	0	0	0	0.31037	1	4682	4682		74.255	2.3776	1	7224800	+		15079	21094;36411	10670	10689	16406	16406					0.07473162680128098
EVREMMSHA	9	Unmodified	_EVREMMSHA_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11;OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2919921875	2	545.244426	1088.4743	-1.0789	-0.00058824	4.4061	0.0024024	3.3273	0.0018142	545.246806866158	46.604	0.44356	46.41	46.165	46.609	-0.19387					18	12	2	0	0	0	0.024427	1	4468	4468		34.173	5.023	1	266740			15080	5783	10671	10690	16407	16407					-0.06639908208376255
EVRKKTLQL	9	Unmodified	_EVRKKTLQL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000249923.7_1_11:14502548-14502617:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.85107421875	2	557.850773	1113.68699	-0.28768	-0.00016048	0.4054	0.00022615	0.11771	6.5667E-05	557.8508728894781	26.55	0.8529	26.382	26.119	26.971	-0.16816					44	20	4	0	0	0	0.20652	1	1387	1387		88.177	15.298	1	731150			15081	4330	10672	10691	16408	16408					0.13469669185428756
EVRKKTLQL	9	Unmodified	_EVRKKTLQL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000249923.7_1_11:14502548-14502617:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.850773	1113.68699	-0.73647	-0.00041084	0.76023	0.0004241	0.02376	1.3255E-05	557.851099799087	26.832	0.74086	26.59	26.336	27.077	-0.24164	0.066112	0.00014448	NaN	88.177	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834870			15082	4330	10672	10691							0.13469669185428756
EVRKLQKI	8	Unmodified	_EVRKLQKI_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.30450439453125	2	507.326934	1012.63931	-0.12088	-6.1326E-05	-0.88725	-0.00045013	-1.0081	-0.00051145	507.32630913696727	41.488	1.1744	41.365	41.051	42.225	-0.12317					84	33	4	0	0	0	0.027866	1	3718	3718		39.253	0	1	4814400	+		15083	26508	10673	10692	16409	16409					0.1335001498522388
EVRKLSISW	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EVRKLSISW_					1	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	580.3255615234375	2	580.327131	1158.63971	-1.8598	-0.0010793	-1.152	-0.00066854	-3.0118	-0.0017478	580.3263059104105	25.342	0.94865	25.342	25.052	26.001	0					70	22	5	0	0	0	0.27161	2	1194	1194;1207		79.451	29.915	1	3356400			15084	3524	10674	10693	16410;16411	16410					0.06673389914431027
EVRKLSISW	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EVRKLSISW_					1	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	580.325439453125	2	580.327131	1158.63971	-1.4085	-0.00081737	-1.5335	-0.00088991	-2.9419	-0.0017073	580.3260489853471	25.393	0.8632	25.358	25.079	25.943	-0.034397					69	20	5	0	0	0	0.18915	1	1190	1190		90.777	21.149	1	3175500			15085	3524	10674	10693	16412	16412					0.06673389914431027
EVRKLSISW	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EVRKLSISW_					1	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	580.3255004882812	2	580.327131	1158.63971	0.22524	0.00013071	-3.163	-0.0018356	-2.9377	-0.0017049	580.3251628263445	25.235	0.7859	25.316	25.093	25.879	0.080088					63	18	5	0	0	0	0.33245	1	1122	1122		71.296	12.514	1	3494900			15086	3524	10674	10693	16413	16413					0.06673389914431027
EVRLKQESA	9	Unmodified	_EVRLKQESA_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2928466796875	2	530.293288	1058.57202	-1.0534	-0.0005586	0.4679	0.00024812	-0.58548	-0.00031048	530.2934310657217	23.844	0.5575	23.844	23.566	24.123	0					36	12	4	0	0	0	0.45795	1	993	993		62.107	9.8082	1	1047400	+		15087	20941	10675	10694	16414	16414					0.045079399836367884
EVRLQNETS	9	Unmodified	_EVRLQNETS_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2638549804688	2	538.272552	1074.53055	-0.1654	-8.9029E-05	3.9155	0.0021076	3.7501	0.0020186	538.2744939304654	69.386	0.65792	69.135	68.95	69.608	-0.25063					26	15	2	0	0	0	0.024466	1	8058	8058		31.53	6.0796	1	1098100			15088	10234	10676	10695	16415	16415					-0.0037324077570701775
EVRLRDETV	9	Unmodified	_EVRLRDETV_					0	0	0		ENSG00000170667|ENST00000465829|RASA4B;ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000105808|ENST00000262940|RASA4;ENST00000427076.5_1_7:43992756-44009363:-|nuORF	ENSG00000170667|ENST00000465829|RASA4B	ENSG00000170667|ENST00000465829|RASA4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.8038940429688	2	558.80402	1115.59349	-0.98254	-0.00054905	0.21159	0.00011824	-0.77094	-0.00043081	558.8040956722554	48.808	1.0189	48.707	48.358	49.377	-0.1008					79	26	5	0	0	0	0.4752	1	4877	4877		60.972	4.2509	1	7840100			15089	8066	10677	10696	16416	16416					0.040313250123290345
EVRLSPKLI	9	Unmodified	_EVRLSPKLI_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2379760742188	2	527.834591	1053.65463	-0.98098	-0.00051779	-0.30028	-0.0001585	-1.2813	-0.0006763	527.8345066589471	68.77	0.67766	68.77	68.56	69.238	0					53	17	4	0	0	0	0.024397	1	8252	8252		39.253	0	1	993450			15090	5949	10678	10697	16417	16417					0.12994881782424272
EVRMELHL	8	Unmodified	_EVRMELHL_					0	0	0			REV__ENST00000474490.1_1_3:139236471-139237442:-|nuORF	REV__ENST00000474490.1_1_3:139236471-139237442:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7701416015625	2	513.773677	1025.5328	-0.57398	-0.0002949	-0.066215	-3.4019E-05	-0.64019	-0.00032891	513.773112588113	43.387	0.14718	43.248	43.174	43.321	-0.13929					5	3	2	0	0	0	0.027866	1	4037	4037		24.203	0	1	84918	+		15091	22105	10679	10698	16418	16418					0.021055164284007333
EVRMHTLI	8	Oxidation (M)	_EVRM(Oxidation (M))HTLI_		EVRM(1)HTLI		EVRM(63)HTLI	0	0	1			REV__nc|ENSG00000162552|P56705-2|WNT4	REV__nc|ENSG00000162552|P56705-2|WNT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8004150390625	2	507.773677	1013.5328	-0.56776	-0.00028829	-0.88575	-0.00044976	-1.4535	-0.00073805	507.7731516037054	31.187	0.55961	31.002	30.576	31.136	-0.18503					18	13	2	0	0	0	0.027866	1	2058	2058		63.306	15.391	1	81898	+		15092	25454	10680	10699	16419	16419		753			0.02657516428416784
EVRNARLL	8	Unmodified	_EVRNARLL_					0	0	0		PCDHB6|p.T624N|1|0.82|ENSG00000113211|chr5:141152128-141152128|C/A|missense_variant	PCDHB6|p.T624N|1|0.82|ENSG00000113211|chr5:141152128-141152128|C/A|missense_variant	PCDHB6|p.T624N|1|0.82|ENSG00000113211|chr5:141152128-141152128|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.83642578125	2	485.793258	969.571963	-0.351	-0.00017051	-3.308	-0.001607	-3.659	-0.0017775	485.7916485396675	33.741	0.61626	33.541	33.286	33.902	-0.20019					40	15	4	0	0	0	0.027866	1	2442	2442		53.351	7.3995	1	937400			15093	18949	10681	10700	16420	16420					0.08595984774274257
EVRNFQET	8	Unmodified	_EVRNFQET_					0	0	0		ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7707824707031	2	511.748713	1021.48287	-0.77152	-0.00039483	-0.073887	-3.7812E-05	-0.84541	-0.00043264	511.74875849585817	84.547	1.2515	84.474	83.961	85.213	-0.072769					44	29	2	0	0	0	0.027866	1	10522	10522		65.803	0	1	132490			15094	8528	10682	10701	16421	16421					-0.027008949758965173
EVRNGPYSESH	11	Unmodified	_EVRNGPYSESH_					0	0	0		ENST00000391788.6_1_19:52905223-52909266:+|nuORF	ENST00000391788.6_1_19:52905223-52909266:+|nuORF	ENST00000391788.6_1_19:52905223-52909266:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.7749328613281	3	425.530186	1273.56873	-0.3483	-0.00014821	1.6446	0.00069984	1.2963	0.00055162	425.5304036030364	43.157	0.19192	42.931	42.833	43.025	-0.22597					5	4	2	0	0	0	0.024727	1	3931	3931		29.551	9.5203	1	63591			15095	13395	10683	10702	16422	16422					-0.057113548610459475
EVRNGPYSESH	11	Unmodified	_EVRNGPYSESH_					0	0	0		ENST00000391788.6_1_19:52905223-52909266:+|nuORF	ENST00000391788.6_1_19:52905223-52909266:+|nuORF	ENST00000391788.6_1_19:52905223-52909266:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	425.530186	1273.56873	-0.046585	-1.9823E-05	-0.42704	-0.00018172	-0.47363	-0.00020154	425.52999481948865	43.164	0.19361	42.927	42.759	42.953	-0.23736	-0.0021763	-0.00099687	NaN	29.551	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37005			15096	13395	10683	10702							-0.057113548610459475
EVRNILHL	8	Unmodified	_EVRNILHL_					0	0	0		ZBTB24|p.Q538H|1|0.36|ENSG00000112365|chr6:109466331-109466331|C/A|missense_variant	ZBTB24|p.Q538H|1|0.36|ENSG00000112365|chr6:109466331-109466331|C/A|missense_variant	ZBTB24|p.Q538H|1|0.36|ENSG00000112365|chr6:109466331-109466331|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.8238830566406	2	497.295633	992.576714	-0.26055	-0.00012957	3.6942	0.0018371	3.4336	0.0017075	497.29711938840535	69.562	1.3633	69.339	68.645	70.008	-0.22245					56	32	2	0	0	0	0.027866	1	8124	8124		37.159	1.5408	1	156360			15097	38172	10684	10703	16423	16423					0.0801286891704649
EVRPCGPLT	9	Unmodified	_EVRPCGPLT_					0	0	0			REV__ENST00000527658.1_1_11:644552-646563:-|nuORF	REV__ENST00000527658.1_1_11:644552-646563:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.24066162109375	2	486.252577	970.490601	0.50963	0.00024781	-4.3266	-0.0021038	-3.817	-0.001856	486.2501860477534	47.918	0.52422	47.732	47.491	48.015	-0.18684					19	13	2	0	0	0	0.024354	1	4679	4679		38.806	0	1	200300	+		15098	34479	10685	10704	16424	16424					0.004175410200218721
EVRPCGPLT	9	Unmodified	_EVRPCGPLT_					0	0	0			REV__ENST00000527658.1_1_11:644552-646563:-|nuORF	REV__ENST00000527658.1_1_11:644552-646563:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.252577	970.490601	-0.5737	-0.00027896	-4.5881	-0.002231	-5.1618	-0.00251	486.2501632143899	47.899	0.35042	47.899	47.653	48.003	0	0.078257	-0.00064683	NaN	44.117	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246940	+		15099	34479	10685	10704							0.004175410200218721
EVRPRSVE	8	Unmodified	_EVRPRSVE_					0	0	0		ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3041687011719	2	486.267073	970.519593	0.021424	1.0418E-05	-1.1985	-0.00058279	-1.1771	-0.00057237	486.2648112896805	47.662	0.22565	47.393	47.238	47.463	-0.26939					7	5	2	0	0	0	0.027866	1	4650	4650		37.159	3.2375	1	46835			15100	8349	10686	10705	16425	16425					0.033154016406683695
EVRQGAQW	8	Unmodified	_EVRQGAQW_					0	0	0		ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7740478515625	2	487.246141	972.477728	0.69018	0.00033629	-2.1349	-0.0010402	-1.4447	-0.00070393	487.2451866977891	55.544	0.99144	55.544	55.216	56.207	0					36	27	3	0	0	0	0.027866	1	6208	6208		40.573	7.057	1	273960			15101	3045	10687	10706	16426	16426					-0.009611540478545066
EVRQQPKSLK	10	Unmodified	_EVRQQPKSLK_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MSMS	OPSCC_39_ClassI_Rep-3	3	607.2078857421875	2	606.856586	1211.69862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.615	1	15.671	15.171	16.171	0.055788								0	0	0	0.77833	1	29	29		9.1829	3.9628	1				15102	6820	10688	10707	16427	16427					0.10123866208732579
EVRRLLID	8	Unmodified	_EVRRLLID_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3104553222656	2	507.308741	1012.60293	-0.16843	-8.5448E-05	3.5575	0.0018048	3.3891	0.0017193	507.3103531967286	31.729	1.2953	31.544	31.208	32.504	-0.18503					77	30	4	0	0	0	0.56592	1	2135	2135		79.451	8.1553	1	2286300			15103	9402	10689	10708	16428	16428					0.0971313808852301
EVRRVTIV	8	Unmodified	_EVRRVTIV_					0	0	0		ENST00000607092.1_1_7:101459310-101559544:+|nuORF	ENST00000607092.1_1_7:101459310-101559544:+|nuORF	ENST00000607092.1_1_7:101459310-101559544:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2875671386719	2	486.303458	970.592364	-1.2948	-0.00062966	1.1724	0.00057012	-0.12243	-5.9541E-05	486.3039830069938	38.728	0.44103	38.563	38.32	38.761	-0.16458					27	11	3	0	0	0	0.027866	1	3194	3194		50.025	0	1	929830			15104	17574	10690	10709	16429	16429					0.10589155434092845
EVRSLLAEV	9	Unmodified	_EVRSLLAEV_					0	0	0			REV__ENSG00000164867|ENST00000297494|NOS3	REV__ENSG00000164867|ENST00000297494|NOS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.292724609375	2	508.292756	1014.57096	-0.40836	-0.00020757	0.26047	0.00013239	-0.1479	-7.5176E-05	508.29259265272225	64.653	1.358	64.418	64.021	65.379	-0.2345					89	33	5	0	0	0	0.22902	1	7365	7365		85.161	0	1	4590900	+		15105	25810	10691	10710	16430	16430					0.06425725614724342
EVRSLLAEV	9	Unmodified	_EVRSLLAEV_					0	0	0			REV__ENSG00000164867|ENST00000297494|NOS3	REV__ENSG00000164867|ENST00000297494|NOS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.29205322265625	2	508.292756	1014.57096	-0.6134	-0.00031179	-0.067349	-3.4233E-05	-0.68075	-0.00034602	508.292723052814	64.683	1.6496	64.48	63.99	65.64	-0.20254					72	40	2	0	0	0	0.16638	1	7352	7352		95.815	2.6197	1	4629600	+		15106	25810	10691	10710	16431	16431					0.06425725614724342
EVRSVSTWL	9	Unmodified	_EVRSVSTWL_					0	0	0		chr1:152114111-152144990|142|23.89|0.08|8.2|-|2|TE_info:SVA_C,SVA_C_dup24,SVA,Retroposon,donor,-,152144990,152145699|TCHH,None|3	chr1:152114111-152144990|142|23.89|0.08|8.2|-|2|TE_info:SVA_C,SVA_C_dup24,SVA,Retroposon,donor,-,152144990,152145699|TCHH,None|3	chr1:152114111-152144990|142|23.89|0.08|8.2|-|2|TE_info:SVA_C,SVA_C_dup24,SVA,Retroposon,donor,-,152144990,152145699|TCHH,None|3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7933349609375	2	538.790381	1075.56621	-1.1442	-0.00061648	-0.91441	-0.00049268	-2.0586	-0.0011092	538.7902773448774	25.031	0.24709	25.031	24.964	25.211	0					7	5	2	0	0	0	0.024495	1	1137	1137		42.396	9.5837	1	59624			15107	273	10692	10711	16432	16432					0.031448414719761786
EVSAPPFF	8	Unmodified	_EVSAPPFF_					0	0	0			REV__ENST00000400198.7_2_13:107220308-107220443:-|nuORF	REV__ENST00000400198.7_2_13:107220308-107220443:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.26336669921875	2	447.223811	892.433069	-0.16164	-7.2287E-05	-1.2101	-0.00054119	-1.3717	-0.00061347	447.224342508728	45.692	1.0242	45.736	45.344	46.368	0.043877					29	29	2	0	0	0	0.027866	1	4428	4428		37.028	5.0736	1	115640	+		15108	31847	10693	10712	16433	16433					-0.01744977913904222
EVSCHGCCAGE	11	Unmodified	_EVSCHGCCAGE_					0	0	0		ENST00000397118.7_1_14:24047403-24047508:-|nuORF	ENST00000397118.7_1_14:24047403-24047508:-|nuORF	ENST00000397118.7_1_14:24047403-24047508:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.8190307617188	2	547.688626	1093.3627	-1.4875	-0.0008147	-1.7414	-0.00095376	-3.229	-0.0017685	547.6876850967084	43.985	0.32022	43.985	43.8	44.12	0					12	8	2	0	0	0	0.024798	1	4172	4172		8.6937	5.2837	1	128370			15109	13578	10694	10713	16434	16434					-0.18024710627832974
EVSEEPPQLWR	11	Unmodified	_EVSEEPPQLWR_					0	0	0			REV__ENSG00000121101|ENST00000349033|TEX14	REV__ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.25830078125	3	457.229736	1368.66738	-0.0082891	-3.79E-06	3.7361	0.0017083	3.7278	0.0017045	457.23136068153354	32.144	0.66885	32.144	31.749	32.418	0					38	16	4	0	0	0	0.024771	1	2213	2213		34.087	9.0187	1	89349	+		15110	22582	10695	10714	16435	16435					-0.0022075161600696447
EVSEVRNTEMV	11	Unmodified	_EVSEVRNTEMV_					0	0	0			REV__ENSG00000100941|ENST00000216832|PNN	REV__ENSG00000100941|ENST00000216832|PNN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.2071228027344	3	431.543215	1291.60782	-0.51691	-0.00022307	-2.5348	-0.0010939	-3.0517	-0.0013169	431.5420360709958	43.739	0.35235	43.52	43.282	43.634	-0.21939					16	9	2	0	0	0	0.02473	1	4009	4009		15.921	0	1	157120	+		15111	21166	10696	10715	16436	16436					-0.02632390621693048
EVSFRYPN	8	Unmodified	_EVSFRYPN_					0	0	0		ENST00000511160.5_2_4:20702342-20703457:+|nuORF	ENST00000511160.5_2_4:20702342-20703457:+|nuORF	ENST00000511160.5_2_4:20702342-20703457:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.7651672363281	2	506.248349	1010.48214	-0.5908	-0.00029909	3.1714	0.0016055	2.5806	0.0013064	506.75092285099964	80.184	0.37785	80.184	79.911	80.289	0					13	8	3	0	0	0	0.027866	1	9945	9945		51.335	28.293	1	71397			15112	15831	10697	10716	16437	16437					-0.022676896249549827
EVSIQNNK	8	Unmodified	_EVSIQNNK_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.6213684082031	2	466.245806	930.47706	-0.019644	-9.1591E-06	-0.05769	-2.6898E-05	-0.077334	-3.6057E-05	466.24575287062163	46.715	0.36101	46.445	46.267	46.628	-0.26939					13	9	2	0	0	0	0.027866	1	4525	4525		35.618	0	1	156100			15113	4979	10698	10717	16438	16438					0.009040065124281682
EVSISMAEDLA	11	Unmodified	_EVSISMAEDLA_					0	0	0			REV__nc|ENSG00000120868|O14727-3|APAF1	REV__nc|ENSG00000120868|O14727-3|APAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	581.8212280273438	2	582.776279	1163.538	-1.836	-0.00107	-1.589	-0.00092601	-3.4249	-0.001996	582.7751542307849	64.719	1.0534	64.456	64.047	65.101	-0.2626					23	19	2	0	0	0	0.024727	1	7645	7645		18.262	0.79408	1	121860	+		15114	36614	10699	10718	16439	16439					-0.03722269290301483
EVSISTRLT	9	Unmodified	_EVSISTRLT_					0	0	0			REV__nc|ENSG00000168398|P30411-2|BDKRB2	REV__nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2481689453125	2	503.282389	1004.55022	-0.92852	-0.00046731	4.2916	0.0021599	3.363	0.0016926	503.2844527088571	60.561	0.62776	60.561	60.256	60.884	0					22	15	2	0	0	0	0.024447	1	7022	7022		40.778	11.629	1	723840	+		15115	26256	10700	10719	16440	16440					0.04813135235031041
EVSKAIINIF	10	Unmodified	_EVSKAIINIF_					0	0	0		nc|ENSG00000145723|Q9NXP7-3|GIN1;ENSG00000145723|ENST00000399004|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	nc|ENSG00000145723|Q9NXP7-3|GIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3299560546875	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.1333	1	11017	11017		28.081	0.19925	1	4134200			15116	5830	10701	10720	16441	16441					0.08819158199935373
EVSKIKSTA	9	Unmodified	_EVSKIKSTA_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.78424072265625	2	481.779482	961.544411	0.42231	0.00020346	3.4815	0.0016773	3.9038	0.0018808	481.7810472820206	84.567	0.36917	84.567	84.3	84.669	0					15	8	2	0	0	0	0.024541	1	10606	10606		15.642	0	1	220440			15117	1344	10702	10721	16442	16442					0.062100367233938414
EVSLELSEE	9	Unmodified	_EVSLELSEE_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7803344726562	2	517.748044	1033.48154	-1.1101	-0.00057476	2.655	0.0013746	1.5449	0.00079987	517.7490728777298	44.675	0.83276	44.675	44.281	45.114	0					60	23	3	0	0	0	0.024263	1	4259	4259		51.335	0	1	1136400			15118	2874	10703	10722	16443	16443					-0.03386573855300412
EVSLELSEE	9	Unmodified	_EVSLELSEE_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7802734375	2	517.748044	1033.48154	-1.1243	-0.00058213	2.638	0.0013658	1.5137	0.00078371	517.7491630913715	44.81	0.72222	44.662	44.322	45.044	-0.1488					53	20	3	0	0	0	0.024294	1	4271	4271		55.504	0	1	1236800			15119	2874	10703	10722	16444	16444					-0.03386573855300412
EVSLLPQP	8	Unmodified	_EVSLLPQP_					0	0	0			REV__ENSG00000146376|ENST00000368149|ARHGAP18	REV__ENSG00000146376|ENST00000368149|ARHGAP18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2664489746094	2	441.750193	881.485833	-1.7451	-0.00077088	2.2789	0.0010067	0.53386	0.00023583	441.75099010749875	60.397	0.93463	60.476	59.863	60.797	0.078888					51	24	4	0	0	0	0.027866	1	6815	6815		30.504	0	1	1256900	+		15120	24481	10704	10723	16445	16445					0.04034980148901468
EVSPDKAL	8	Unmodified	_EVSPDKAL_					0	0	0			REV__ENSG00000104808|ENST00000221403|DHDH	REV__ENSG00000104808|ENST00000221403|DHDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.26556396484375	2	429.732	857.449448	0.030643	1.3168E-05	-0.97888	-0.00042065	-0.94823	-0.00040749	429.7326051810458	48.39	0.50075	48.457	48.228	48.729	0.066795					19	13	2	0	0	0	0.027866	1	4885	4885		40.778	5.1599	1	73352	+		15121	21466	10705	10724	16446	16446					0.015021032521872257
EVSPGVIAN	9	Unmodified	_EVSPGVIAN_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.27166748046875	2	443.23745	884.460347	-0.85828	-0.00038042	1.8469	0.00081861	0.98861	0.00043819	443.23777983940926	46.371	0.94897	46.219	45.789	46.738	-0.15157					37	26	3	0	0	0	0.023635	1	4595	4595		39.253	18.306	1	313090			15122	9007	10706	10725	16447	16447					0.013495056264787308
EVSPRIPE	8	Unmodified	_EVSPRIPE_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.8102722167969	2	463.750724	925.486896	-0.32482	-0.00015063	-0.49267	-0.00022848	-0.81749	-0.00037911	463.7501636628278	39.093	0.35705	39.117	38.956	39.313	0.023727					15	9	2	0	0	0	0.027866	1	3278	3278		42.396	1.618	1	180710			15123	1335	10707	10726	16448	16448					0.02117194517813914
EVSPSDVREN	10	Unmodified	_EVSPSDVREN_					0	0	0		ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENST00000420969.1_1_2:162357792-162360000:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.3136596679688	2	566.267467	1130.52038	-0.86158	-0.00048789	3.0231	0.0017119	2.1616	0.001224	566.2689108508359	36.443	0.52204	36.401	36.208	36.73	-0.042454					18	13	2	0	0	0	0.03519	1	2893	2893		29.17	0.020503	1	103420			15124	13986	10708	10727	16449	16449					-0.03965848500934044
EVSQAENSLL	10	Unmodified	_EVSQAENSLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2757568359375	2	545.274761	1088.53497	-0.48422	-0.00026403	-0.41899	-0.00022847	-0.90322	-0.0004925	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	1.0447	1	9834	9834		40.058	2.2467	1	63206000			15125	3505	10709	10728	16450	16450					-0.005757763527981297
EVSRKKVAL	9	Unmodified	_EVSRKKVAL_					0	0	0		ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.297119140625	2	515.324391	1028.63423	0.070381	3.6269E-05	-0.30659	-0.00015799	-0.23621	-0.00012173	515.3241373673001	36.579	0.56134	36.363	36.088	36.65	-0.21661					31	13	3	0	0	0	0.024344	1	2905	2905		45.972	1.8554	1	721440			15126	14289	10710	10729	16451	16451					0.12105711122626417
EVSRKKVAL	9	Unmodified	_EVSRKKVAL_					0	0	0		ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.324391	1028.63423	-0.58229	-0.00030007	0.0032779	1.6892E-06	-0.57902	-0.00029838	515.3243104539129	36.469	0.38629	36.469	36.298	36.685	0	0.080307	0.00071634	NaN	45.972	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103420			15127	14289	10710	10729							0.12105711122626417
EVSRKKVAL	9	Unmodified	_EVSRKKVAL_					0	0	0		ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.324391	1028.63423	-0.80329	-0.00041395	0.0086692	4.4675E-06	-0.79462	-0.00040949	515.324225067653	36.375	0.35493	36.332	36.136	36.491	-0.042454	-0.056551	0.0007219	NaN	45.972	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84698			15128	14289	10710	10729							0.12105711122626417
EVSRKKVAL	9	Unmodified	_EVSRKKVAL_					0	0	0		ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.324391	1028.63423	-0.94863	-0.00048885	0.50538	0.00026044	-0.44325	-0.00022842	515.3245537035888	36.491	0.3476	36.529	36.374	36.721	0.038044	0.14022	0.0012338	NaN	45.972	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102150			15129	14289	10710	10729							0.12105711122626417
EVSVFAGPLF	10	Unmodified	_EVSVFAGPLF_					0	0	0		ENST00000562680.5_1_18:53068947-53069109:-|nuORF	ENST00000562680.5_1_18:53068947-53069109:-|nuORF	ENST00000562680.5_1_18:53068947-53069109:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2848510742188	2	533.2844	1064.55425	5.2029	0.0027746	-4.3854	-0.0023387	0.8175	0.00043596	533.2818758864512	16.878	0.69662	16.625	16.48	17.176	-0.25378					42	17	4	0	0	0	0.75995	1	93	93		63.306	4.5243	1	355120			15130	16845	10711	10730	16452	16452					0.024552247287601858
EVTAMSEITT	10	Unmodified	_EVTAMSEITT_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.79443359375	2	541.257722	1080.50089	-1.1147	-0.00060335	-1.8947	-0.0010255	-3.0094	-0.0016289	541.2566010067651	51.557	0.67885	51.281	51.004	51.683	-0.27643					27	17	2	0	0	0	0.03519	1	5317	5317		25.574	1.3713	1	1691800			15131	9025	10712	10731	16453	16453					-0.03613940836066831
EVTEVFYW	8	Unmodified	_EVTEVFYW_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.773193359375	2	536.752933	1071.49131	-0.60701	-0.00032581	-0.32005	-0.00017179	-0.92706	-0.0004976	536.7522473122298	41.379	0.4859	41.402	41.147	41.633	0.023003					20	13	2	0	0	0	0.027866	1	3700	3700		33.516	5.6333	1	167720	+		15132	26690	10713	10732	16454	16454					-0.04157341059294595
EVTFEKTNPSH	11	Unmodified	_EVTFEKTNPSH_					0	0	0			REV__ZNF699|p.K276Nfs*69|1|0.06|ENSG00000196110|chr19:9296558-9296579|TTTACATTCATAGTTTGTCTTT/-|frameshift_variant	REV__ZNF699|p.K276Nfs*69|1|0.06|ENSG00000196110|chr19:9296558-9296579|TTTACATTCATAGTTTGTCTTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.22686767578125	3	430.210453	1287.60953	-0.46365	-0.00019947	4.1708	0.0017943	3.7072	0.0015949	430.2120550467827	45.032	0.26254	44.933	44.749	45.012	-0.099449					10	6	2	0	0	0	0.024759	1	4254	4254		12.957	0	1	86981	+		15133	37817	10714	10733	16455	16455					-0.022770135414248216
EVTGEILL	8	Unmodified	_EVTGEILL_					0	0	0		ENSG00000081818|ENST00000194152|PCDHB4	ENSG00000081818|ENST00000194152|PCDHB4	ENSG00000081818|ENST00000194152|PCDHB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7637939453125	2	437.250026	872.485499	-0.34579	-0.0001512	1.8143	0.00079331	1.4685	0.00064212	437.2511332086892	26.838	0.68036	26.67	26.506	27.186	-0.16816					32	15	3	0	0	0	0.027866	1	1433	1433		42.474	7.2737	1	125800			15134	1716	10715	10734	16456	16456					0.04415560429049492
EVTHLESLA	9	Unmodified	_EVTHLESLA_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.77105712890625	2	499.761289	997.508025	-0.31228	-0.00015606	-3.0145	-0.0015065	-3.3268	-0.0016626	499.75971769616865	31.304	0.30645	31.063	30.915	31.221	-0.24109					9	7	2	0	0	0	0.024477	1	2074	2074		27.882	21.147	1	125580	+		15135	22933	10716	10735	16457	16457					0.009171598266675574
EVTLAEDFMV	10	Unmodified	_EVTLAEDFMV_					0	0	0		ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.8063354492188	2	577.275915	1152.53728	-0.83367	-0.00048126	-1.0449	-0.00060321	-1.8786	-0.0010845	577.2751978778623	73.978	0.89643	73.988	73.793	74.69	0.0096512					39	20	3	0	0	0	0.03519	1	8979	8979		34.173	0	1	474660			15136	5512	10717	10736	16458	16458					-0.03289063939382686
EVTLLVQRG	9	Unmodified	_EVTLLVQRG_					0	0	0		nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7-4|MAGI1	nc|ENSG00000151276|Q96QZ7-4|MAGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7720642089844	2	507.800749	1013.58694	-0.47518	-0.0002413	-0.21249	-0.0001079	-0.68767	-0.0003492	507.8005188143234	33.664	0.61137	33.67	33.387	33.999	0.0058823					38	15	4	0	0	0	0.023417	1	2456	2456		68.787	0	1	2076800			15137	6191	10718	10737	16459	16459					0.08069431851617992
EVTLTSIVPTR	11	Unmodified	_EVTLTSIVPTR_					0	0	0		ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	608.8237915039062	2	608.350803	1214.68705	-0.50493	-0.00030718	0.51065	0.00031065	0.0057163	3.4775E-06	608.3510484034641	46.437	0.4169	46.176	46.006	46.423	-0.26118					22	10	3	0	0	0	0.024723	1	4465	4465		40.058	6.1365	1	205140			15138	7482	10719	10738	16460	16460					0.08829624394775237
EVTMKKIH	8	Unmodified	_EVTMKKIH_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.27838134765625	2	493.278595	984.542637	-0.3339	-0.00016471	0.19791	9.7624E-05	-0.13599	-6.7083E-05	493.2784954520519	20.146	1.7381	19.978	19.669	21.407	-0.16774					95	35	3	0	0	0	1.0338	1	564	564		31.955	1.4512	1	867630	+		15139	21931	10720	10739	16461	16461					0.04974704433777788
EVTPRVVSK	9	Unmodified	_EVTPRVVSK_					0	0	0		ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.77337646484375	2	507.800749	1013.58694	-0.57006	-0.00028948	-0.21346	-0.00010839	-0.78352	-0.00039787	507.80057210336463	33.875	0.77803	33.875	33.554	34.332	0					36	19	3	0	0	0	0.023837	1	2468	2468		45.972	5.1941	1	2056500			15140	6789	10721	10740	16462	16462					0.08069431851617992
EVTQGADALI	10	Unmodified	_EVTQGADALI_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	508.766571	1015.51859	0.28445	0.00014472	-0.45573	-0.00023186	-0.17128	-8.7141E-05	508.76629016361085	65.662	0.89764	65.662	65.326	66.224	0					53	23	3	0	0	0	0.34774	1	7788	7788		104.06	13.28	1	5155800	+		15141	20777	10722	10741	16463	16463					0.011451424810957178
EVTRKWYA	8	Unmodified	_EVTRKWYA_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.8447875976562	2	526.779816	1051.54508	-0.32547	-0.00017145	0.026365	1.3889E-05	-0.2991	-0.00015756	527.2812382022763	55.842	0.33485	55.686	55.48	55.814	-0.15601					12	8	2	0	0	0	0.027866	1	6167	6167		35.201	0	1	161500			15142	8348	10723	10742	16464	16464					0.021368761630810695
EVTRLLTSH	9	Unmodified	_EVTRLLTSH_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3181762695312	2	528.29583	1054.57711	-1.0853	-0.00057334	1.462	0.00077236	0.37672	0.00019902	528.2965777033546	39.292	0.49688	39.193	38.949	39.446	-0.098751					38	13	4	0	0	0	0.024427	1	3346	3346		26.693	0	1	1116900			15143	18093	10724	10743	16465	16465					0.052002438462295686
EVTRLLTSH	9	Unmodified	_EVTRLLTSH_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.318115234375	2	528.29583	1054.57711	-0.79351	-0.00041921	1.2453	0.00065787	0.45175	0.00023866	528.2964723458592	39.468	0.46433	39.492	39.277	39.741	0.023727					30	12	3	0	0	0	0.024427	1	3350	3350		26.693	4.733	1	1034200			15144	18093	10724	10743	16466	16466					0.052002438462295686
EVTSFSTDTE	10	Unmodified	_EVTSFSTDTE_					0	0	0		nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF;ENSG00000162669|ENST00000370425|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.318359375	2	558.240583	1114.46661	0.43825	0.00024465	-0.10008	-5.5868E-05	0.33817	0.00018878	558.2403853123259	70.144	0.3686	69.851	69.551	69.92	-0.29291					12	8	2	0	0	0	0.03519	1	8443	8443		51.335	14.176	1	54508			15145	6974	10725	10744	16467	16467					-0.08604065723352505
EVTSFSTDTE	10	Unmodified	_EVTSFSTDTE_					0	0	0		nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF;ENSG00000162669|ENST00000370425|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.240583	1114.46661	-0.027313	-1.5247E-05	0.20786	0.00011603	0.18054	0.00010079	558.2405442900914	70.258	0.41255	70.007	69.691	70.103	-0.25063	0.077771	0.0002266	NaN	42.396	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80790			15146	6974	10725	10744							-0.08604065723352505
EVTSPDAGALY	11	Unmodified	_EVTSPDAGALY_					0	0	0			REV__ENSG00000092201|ENST00000216297|SUPT16H	REV__ENSG00000092201|ENST00000216297|SUPT16H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.79443359375	2	561.769311	1121.52407	-0.83196	-0.00046737	1.8976	0.001066	1.0656	0.00059863	561.7700120115561	52.282	0.19533	52.163	52.086	52.282	-0.11875					6	4	2	0	0	0	0.023337	1	5437	5437		69.628	37.993	1	59393	+		15147	20930	10726	10745	16468	16468					-0.03183178727090308
EVTTCQEVVI	10	Unmodified	_EVTTCQEVVI_					0	0	0		ENSG00000123094|ENST00000689635|RASSF8;nc|ENSG00000123094|Q8NHQ8-2|RASSF8;RASSF8|p.A110Vfs*3|1|0.09|ENSG00000123094|chr12:26064723-26064723|C/-|frameshift_variant	ENSG00000123094|ENST00000689635|RASSF8	ENSG00000123094|ENST00000689635|RASSF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.3084106445312	2	560.781364	1119.54818	0.27534	0.00015441	-0.80935	-0.00045387	-0.53401	-0.00029946	560.780556894926	67.287	0.40802	67.039	66.835	67.243	-0.2484					13	9	2	0	0	0	0.03519	1	7743	7743		25.574	2.0514	1	127760			15148	3955	10727	10746	16469	16469					-0.006816615650677704
EVTTEFTVD	9	Unmodified	_EVTTEFTVD_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.78564453125	2	520.742762	1039.47097	-0.64486	-0.00033581	-0.86554	-0.00045072	-1.5104	-0.00078653	521.2428042503602	78.238	0.52885	78.238	77.918	78.447	0					20	12	2	0	0	0	0.024405	1	9669	9669		35.618	13.658	1	69212			15149	4299	10728	10747	16470	16470					-0.04718556509737937
EVTTEFTVD	9	Unmodified	_EVTTEFTVD_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.742762	1039.47097	-0.13738	-7.1538E-05	1.8633	0.00097028	1.7259	0.00089874	521.244964742513	78.841	0.30329	78.586	78.34	78.644	-0.25471	0.17393	0.0017178	NaN	35.618	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38343			15150	4299	10728	10747							-0.04718556509737937
EVTTGHGQW	9	Unmodified	_EVTTGHGQW_					0	0	0			REV__SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|79|3|anti-sense	REV__SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|79|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3105163574219	2	507.735606	1013.45666	-0.59745	-0.00030334	0.31334	0.00015909	-0.2841	-0.00014425	507.7356835810473	31.682	0.5924	31.53	31.232	31.825	-0.15231					29	14	3	0	0	0	0.024506	1	2140	2140		23.042	6.5693	1	452460	+		15151	37657	10729	10748	16471	16471					-0.0495316414737772
EVTTMTRKL	9	Unmodified	_EVTTMTRKL_					0	0	0		ENST00000452761.1_1_2:110745136-110745940:-|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7636108398438	2	539.799891	1077.58523	-0.81296	-0.00043884	-3.5454	-0.0019138	-4.3583	-0.0023526	539.7977342103676	31.575	0.60341	31.587	31.299	31.902	0.011799					36	14	4	0	0	0	0.02435	1	2107	2107		34.173	0	1	698480			15152	14539	10730	10749	16472	16472					0.04954054771360461
EVTTPAKATP	10	Unmodified	_EVTTPAKATP_					0	0	0			REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	REV__nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.77203369140625	2	507.776939	1013.53933	-0.17945	-9.112E-05	0.53075	0.0002695	0.3513	0.00017838	507.77613480525065	33.718	0.35569	33.775	33.615	33.971	0.056572					14	8	2	0	0	0	0.03519	1	2392	2392		70.816	6.6089	1	78910	+		15153	22230	10731	10750	16473	16473					0.033097328607595955
EVTVAMAATL	10	Unmodified	_EVTVAMAATL_					0	0	0		nc|ENSG00000173612|Q5T6X5-3|GPRC6A;ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.266845703125	2	503.267893	1004.52123	0.16816	8.463E-05	-1.0059	-0.00050622	-0.83771	-0.00042159	503.2669467790603	71.38	1.5708	71.391	70.345	71.916	0.010735					68	39	3	0	0	0	1.0002	1	8586	8586		45.972	5.1941	1	1534500			15154	8392	10732	10751	16474	16474					0.019152746143845434
EVTVDSLVP	9	Unmodified	_EVTVDSLVP_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.73590087890625	2	479.758215	957.501877	0.91261	0.00043783	-0.72853	-0.00034952	0.18408	8.8314E-05	479.75765007361616	59.984	0.4854	59.984	59.88	60.366	0					17	12	2	0	0	0	0.024354	1	6891	6891		47.916	8.8941	1	282620	+		15155	25221	10733	10752	16475	16475					0.021426415951509625
EVTVEAPQVA	10	Unmodified	_EVTVEAPQVA_					0	0	0			REV__ENST00000454844.1_1_10:46174265-46187593:+|nuORF	REV__ENST00000454844.1_1_10:46174265-46187593:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7584838867188	2	521.774396	1041.53424	0.73627	0.00038417	3.1935	0.0016663	3.9297	0.0020504	521.7759899642789	58.822	0.47311	58.58	58.341	58.814	-0.24165					18	11	3	0	0	0	0.03519	1	6488	6488		26.693	3.1702	1	74007	+		15156	26694	10734	10753	16476	16476					0.015134289981460824
EVTVEMNAAPG	11	Unmodified	_EVTVEMNAAPG_					0	0	0		ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5	ENSG00000167916|ENST00000264651|KRT24	ENSG00000167916|ENST00000264651|KRT24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8153686523438	2	559.263339	1116.51212	-0.21939	-0.0001227	4.0555	0.0022681	3.8361	0.0021454	559.2653151481438	80.267	1.1521	80.121	79.954	81.106	-0.146					68	27	4	0	0	0	0.024795	1	9726	9726		35.152	0	1	693770		+	15157	547	10735	10754	16477	16477					-0.04147118741957456
EVTVHAALEN	10	Unmodified	_EVTVHAALEN_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7973022460938	2	541.77747	1081.54039	-0.97426	-0.00052783	-2.1803	-0.0011812	-3.1546	-0.0017091	541.7759880665284	77.62	1.1166	77.634	77.361	78.477	0.013504					58	26	4	0	0	0	0.03519	1	9476	9476		31.53	5.9558	1	1068100			15158	2934	10736	10755	16478	16478					0.0028794722966267727
EVTVNQSLL	9	Unmodified	_EVTVNQSLL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q8VED5;ENSG00000185479|ENST00000252252|KRT6B;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7773132324219	2	501.776939	1001.53933	0.34872	0.00017498	0.59986	0.00030099	0.94858	0.00047597	501.7768597089253	71.75	0.52461	71.76	71.278	71.802	0.0097733					27	13	4	0	0	0	0.03201	1	8627	8627		139.97	14.156	1	2318000		+	15159	520;568;509;503	10737	10756	16479	16479					0.038617328607642776
EVVAGSILTQ	10	Unmodified	_EVVAGSILTQ_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2764892578125	2	508.784764	1015.55498	0.59197	0.00030118	-0.44092	-0.00022433	0.15105	7.6852E-05	508.7843331690516	70.782	0.62212	70.782	70.483	71.105	0					24	14	3	0	0	0	0.03519	1	8590	8590		35.152	0	1	1272300	+		15160	21336	10738	10757	16480	16480					0.04782019377796587
EVVCTYNGR	9	Unmodified	_EVVCTYNGR_					0	0	0			REV__FGFR3-TACC3|6|fusion	REV__FGFR3-TACC3|6|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.305419921875	2	520.745116	1039.47568	-0.47971	-0.0002498	-4.0029	-0.0020845	-4.4826	-0.0023343	520.7422466875995	47.002	0.48216	47.002	46.733	47.216	0					25	12	3	0	0	0	0.024405	1	4705	4705		20.947	0	1	382720	+		15161	36040	10739	10758	16481	16481					-0.04247950847980064
EVVDDILGR	9	Unmodified	_EVVDDILGR_					0	0	0			REV__ENST00000568980.1_1_15:34781792-34782686:-|nuORF	REV__ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.80584716796875	2	508.274564	1014.53457	-0.89044	-0.00045259	1.717	0.00087272	0.82659	0.00042013	508.2748748897059	34.459	0.39348	34.509	34.329	34.723	0.050255					16	9	2	0	0	0	0.023007	1	2521	2521		76.774	37.968	1	180330	+		15162	35360	10740	10759	16482	16482					0.027888487180121047
EVVDEVIQ	8	Unmodified	_EVVDEVIQ_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8026428222656	2	465.742565	929.470577	-0.45623	-0.00021248	2.9163	0.0013583	2.4601	0.0011458	465.7431423584452	28.779	0.55682	28.61	28.213	28.769	-0.16897					14	12	2	0	0	0	0.027866	1	1716	1716		90.777	19.481	1	50400			15163	3408	10741	10760	16483	16483					0.0030206856106360647
EVVDPRAVL	9	Unmodified	_EVVDPRAVL_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2879638671875	2	499.287474	996.560395	0.42711	0.00021325	-1.8857	-0.00094153	-1.4586	-0.00072828	499.28636997274714	49.083	0.86688	49.083	48.864	49.731	0					45	23	3	0	0	0	0.26966	1	5057	5057		79.713	10.085	1	1942000	+		15164	20800	10742	10761	16484	16484					0.061977429602734446
EVVDPRAVL	9	Unmodified	_EVVDPRAVL_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.2883605957031	2	499.287474	996.560395	-1.1282	-0.00056331	-0.51108	-0.00025517	-1.6393	-0.00081848	499.2872225655875	49.019	1.0675	49.093	48.736	49.804	0.074192					68	28	5	0	0	0	0.32811	1	4979	4979		71.877	13.096	1	2136800	+		15165	20800	10742	10761	16485	16485					0.061977429602734446
EVVDPTKCN	9	Unmodified	_EVVDPTKCN_					0	0	0		CON__P12763	CON__P12763	CON__P12763	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7843933105469	2	502.739499	1003.46445	-0.1762	-8.8582E-05	-2.0642	-0.0010377	-2.2404	-0.0011263	502.7379415691451	71.928	0.48221	71.722	71.459	71.941	-0.20613					21	11	3	0	0	0	0.024374	1	8429	8429		32.812	7.3622	1	96724		+	15166	519	10743	10762	16486	16486					-0.037147729421235454
EVVEVVPISH	10	Unmodified	_EVVEVVPISH_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B;chrX:152753391-152753788|137|16.46|0.03|9.03|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152753391-152753542|126|12.66|0.02|9.05|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152752513-152753788|147|21.88|0.06|8.57|-|ENST00000620710|MAGEA2,MAGEA2;chrX:152752513-152753313|144|25.64|0.07|8.6|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751822-152752394|141|22.9|0.06|8.69|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751574-152753788|128|12.04|0.02|9.34|-|ENST00000611674|MAGEA2,MAGEA2;chrX:152751574-152752394|154|37.16|0.12|8.3|-|ENST00000623438|MAGEA2,MAGEA2;chrX:152751574-152751725|157|30.32|0.07|8.79|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152751428-152751509|195|53.73|0.18|8.22|-|ENST00000623806|MAGEA2,MAGEA2;chrX:152714682-152716896|136|16.68|0.02|9.44|+|ENST00000370293|MAGEA2B,MAGEA2B	ENSG00000268606|ENST00000684311|MAGEA2	ENSG00000268606|ENST00000684311|MAGEA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.2904663085938	2	554.305864	1106.59717	-0.74185	-0.00041121	0.427	0.00023669	-0.31485	-0.00017452	554.3058998202351	60.623	0.72173	60.37	60.014	60.736	-0.25373					22	17	2	0	0	0	0.03519	1	6755	6755		40.778	0	1	303620			15167	441	10744	10763	16487	16487					0.04813994786195508
EVVFPFRW	8	Unmodified	_EVVFPFRW_					0	0	0		ENST00000535914.1_1_12:26278140-26278185:-|nuORF	ENST00000535914.1_1_12:26278140-26278185:-|nuORF	ENST00000535914.1_1_12:26278140-26278185:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8048095703125	2	540.287277	1078.56	-0.77631	-0.00041943	2.1593	0.0011667	1.383	0.00074724	540.2875679202556	52.982	0.18973	52.835	52.758	52.948	-0.14723					6	4	2	0	0	0	0.027866	1	5675	5675		38.806	5.9937	1	78645			15168	16356	10745	10764	16488	16488					0.023863680310796553
EVVGIKSGVP	10	Unmodified	_EVVGIKSGVP_					0	0	0		ENST00000006053.6_2_16:57418282-57418342:+|nuORF	ENST00000006053.6_2_16:57418282-57418342:+|nuORF	ENST00000006053.6_2_16:57418282-57418342:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7881774902344	2	492.78985	983.565146	-0.90068	-0.00044384	-2.5568	-0.00126	-3.4575	-0.0017038	492.78850091201184	20.633	0.82328	20.633	20.372	21.195	0					41	16	4	0	0	0	1.0271	1	554	554		42.396	1.8235	1	634500			15169	11097	10746	10765	16489	16489					0.07270627103059724
EVVHREEP	8	Unmodified	_EVVHREEP_					0	0	0			REV__ENST00000558052.1_1_15:59175823-59179549:-|nuORF	REV__ENST00000558052.1_1_15:59175823-59179549:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.80877685546875	2	497.751256	993.487959	-0.35955	-0.00017897	0.11501	5.7247E-05	-0.24454	-0.00012172	497.75122090698636	23.315	0.43558	23.135	22.883	23.318	-0.17989					18	9	3	0	0	0	0.027866	1	901	901		37.159	10.363	1	182520	+		15170	23781	10747	10766	16490	16490					-0.009045911132830042
EVVITLDFC	9	Unmodified	_EVVITLDFC_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.32958984375	2	519.762443	1037.51033	-0.34614	-0.00017991	1.4478	0.00075252	1.1017	0.0005726	519.7627650726675	69.581	0.64894	69.581	69.344	69.993	0					21	15	2	0	0	0	0.024323	1	8417	8417		35.618	5.3006	1	156160			15171	9267	10748	10767	16491	16491					-0.006921277598848974
EVVKNLDF	8	Unmodified	_EVVKNLDF_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.771240234375	2	482.260925	962.507297	-0.058678	-2.8298E-05	-2.5196	-0.0012151	-2.5783	-0.0012434	482.25937836197767	96.679	1.8938	96.679	95.476	97.37	0					45	43	2	0	0	0	0.027866	1	12215	12215		16.473	0	1	399340	+		15172	28819	10749	10768	16492	16492					0.024543651776298248
EVVKRQNS	8	Unmodified	_EVVKRQNS_					0	0	0		ENSG00000141506|ENST00000447110|PIK3R5;ENST00000583810.5_1_17:8783958-8785234:-|nuORF;nc|ENSG00000141506|Q8WYR1-2|PIK3R5	ENSG00000141506|ENST00000447110|PIK3R5	ENSG00000141506|ENST00000447110|PIK3R5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7312927246094	2	480.267073	958.519593	-0.32371	-0.00015547	-0.27309	-0.00013115	-0.59679	-0.00028662	480.2671613303725	31.277	1.0991	31.346	30.786	31.886	0.068962					63	26	5	0	0	0	0.027866	1	1993	1993		47.916	0	1	2652900			15173	5500	10750	10769	16493	16493					0.038674016406730516
EVVKRSSRI	9	Unmodified	_EVVKRSSRI_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3272705078125	2	537.324922	1072.63529	-0.80304	-0.00043149	-0.83809	-0.00045032	-1.6411	-0.00088182	537.3232327880409	82.72	1.7538	82.72	82.113	83.866	0					150	40	6	0	0	0	0.80003	1	10325	10325		39.253	2.8061	1	1791400	+		15174	21708	10751	10770	16494	16494					0.10187925491527494
EVVKVRLQA	9	Unmodified	_EVVKVRLQA_					0	0	0		ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	ENSG00000109424|ENST00000262999|UCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2794799804688	2	521.324391	1040.63423	0.38611	0.00020129	-0.35581	-0.00018549	0.030296	1.5794E-05	521.3242163353232	59.628	0.51752	59.428	59.209	59.727	-0.20016					31	13	3	0	0	0	0.024367	1	6832	6832		36.447	0	1	353590			15175	2973	10752	10771	16495	16495					0.11553711122610366
EVVLALEKY	9	Unmodified	_EVVLALEKY_					0	0	0		ENSG00000117643|ENST00000374332|MAN1C1;ENST00000487493.1_1_1:26107225-26110277:+|nuORF	ENSG00000117643|ENST00000374332|MAN1C1	ENSG00000117643|ENST00000374332|MAN1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.297119140625	2	532.305332	1062.59611	-0.82315	-0.00043817	0.46764	0.00024893	-0.35551	-0.00018924	532.3051740987466	61.327	0.8413	61.07	60.501	61.342	-0.25725					28	20	2	0	0	0	0.024405	1	6855	6855		35.618	1.4457	1	391670			15176	3650	10753	10772	16496	16496					0.0673178041729443
EVVLHLATL	9	Unmodified	_EVVLHLATL_					0	0	0		ENSG00000148204|ENST00000373631|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;nc|ENSG00000148204|Q5IJ48-3|CRB2	ENSG00000148204|ENST00000373631|CRB2	ENSG00000148204|ENST00000373631|CRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.77166748046875	2	497.800217	993.585882	-0.85809	-0.00042716	-0.39525	-0.00019675	-1.2533	-0.00062391	497.7996823870261	51.272	0.70206	51.359	51.116	51.818	0.087006					42	19	4	0	0	0	0.024457	1	5426	5426		21.96	0	1	1532400			15177	6008	10754	10773	16497	16497					0.08883217482730288
EVVLLLLLF	9	Unmodified	_EVVLLLLLF_					0	0	0		ENSG00000198670|ENST00000316300|LPA;nc|ENSG00000240935|Q15195|PLGLA;ENSG00000183281|ENST00000355705|PLGLB1;ENSG00000125551|ENST00000359481|PLGLB2;nc|ENSG00000290613|Q16609|LPAL2;PLG|p.H307Ifs*64|1|0.1|ENSG00000122194|chr6:160718425-160718425|C/-|frameshift_variant;ENSG00000122194|ENST00000308192|PLG	ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7756958007812	2	529.846636	1057.67872	-0.1243	-6.5859E-05	-1.2627	-0.00066902	-1.387	-0.00073488	529.8456686692618	56.93	0.44173	56.728	56.52	56.962	-0.20209					19	11	2	0	0	0	0.024541	1	6220	6220		7.6903	0	1	196270			15178	10164	10755	10774	16498	16498					0.15218722216081915
EVVLVEEPKAM	11	Unmodified	_EVVLVEEPKAM_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1;REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.3369140625	2	622.333764	1242.65297	0.86696	0.00053954	3.6613	0.0022786	4.5283	0.0028181	622.3359965526924	109.95	0.83836	109.95	109.77	110.61	0					74	26	4	0	0	0	1.0521	1	13990	13990		24.519	0.99649	1	2123200	+		15179	20705;32317	10756	10775	16499	16499					0.04135459911481121
EVVLVEEPKAM	11	Unmodified	_EVVLVEEPKAM_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1;REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3364868164062	2	622.333764	1242.65297	0.2866	0.00017836	4.137	0.0025746	4.4236	0.002753	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.013	1	13541	13541		33.922	4.7516	1	1619900	+		15180	20705;32317	10756	10775	16500	16500					0.04135459911481121
EVVMDQYN	8	Unmodified	_EVVMDQYN_					0	0	0			REV__ENSG00000125845|ENST00000378827|BMP2	REV__ENSG00000125845|ENST00000378827|BMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.21826171875	2	499.2184	996.422247	-0.60181	-0.00030043	0.33438	0.00016693	-0.26743	-0.0001335	499.2184688021102	32.3	0.86654	32.142	31.861	32.728	-0.15772					53	20	5	0	0	0	0.74904	1	2184	2184		63.306	9.9548	1	3055500	+		15181	22850	10757	10776	16501	16501					-0.07610748350498397
EVVMMITVEL	10	Unmodified	_EVVMMITVEL_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1;REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.306640625	2	582.306161	1162.59777	-2.0083	-0.0011694	1.6597	0.00096646	-0.34857	-0.00020297	582.3069977082218	62.606	0.70618	62.606	62.384	63.09	0					44	17	3	0	0	0	0.42446	1	7291	7291		96.19	0.37527	1	2672900	+		15182	25112;34514	10758	10777	16502	16502					0.022973301193815132
EVVMMITVEL	10	Unmodified	_EVVMMITVEL_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1;REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3058471679688	2	582.306161	1162.59777	-1.7692	-0.0010302	1.503	0.00087523	-0.26617	-0.00015499	582.3068905797421	62.87	0.73769	62.631	62.394	63.132	-0.23926					37	18	3	0	0	0	0.3934	1	7299	7299		99.375	5.7774	1	2871800	+		15183	25112;34514	10758	10777	16503	16503					0.022973301193815132
EVVNRPPTP	9	Unmodified	_EVVNRPPTP_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3108215332031	2	504.777274	1007.53999	-0.2194	-0.00011075	-0.71278	-0.0003598	-0.93218	-0.00047055	504.7768097910555	48.484	0.17181	48.551	48.417	48.588	0.066795					5	4	2	0	0	0	0.024418	1	4861	4861		37.812	4.9991	1	66603			15184	7535	10759	10778	16504	16504					0.03652572300461543
EVVNRPPTP	9	Unmodified	_EVVNRPPTP_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.777274	1007.53999	-0.59051	-0.00029808	-1.3748	-0.00069396	-1.9653	-0.00099204	505.27812284684984	48.67	0.21288	48.517	48.433	48.646	-0.15277	-0.022327	-0.00019967	NaN	37.812	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71015			15185	7535	10759	10778							0.03652572300461543
EVVQLSTDEET	11	Unmodified	_EVVQLSTDEET_					0	0	0		RNASEL|p.P555T|1|0.3|ENSG00000135828|chr1:182582162-182582162|G/T|missense_variant	RNASEL|p.P555T|1|0.3|ENSG00000135828|chr1:182582162-182582162|G/T|missense_variant	RNASEL|p.P555T|1|0.3|ENSG00000135828|chr1:182582162-182582162|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.9033508300781	3	417.19799	1248.57214	0.33828	0.00014113	3.1084	0.0012968	3.4467	0.001438	417.1990877881276	32.333	0.47884	32.14	31.856	32.335	-0.19261					14	10	2	0	0	0	0.024783	1	2184	2184		49.466	1.5063	1	31346			15186	37838	10760	10779	16505	16505					-0.04220149597699674
EVVRGSVLL	9	Unmodified	_EVVRGSVLL_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2875671386719	2	486.297842	970.581131	-0.99095	-0.0004819	1.6476	0.00080122	0.65665	0.00031933	486.2981713651011	38.466	0.28651	38.287	38.136	38.422	-0.17929					12	7	2	0	0	0	0.024021	1	3194	3194		58.782	0	1	130760			15187	18103	10761	10780	16506	16506					0.09466333339958055
EVVVFGSLPA	10	Unmodified	_EVVVFGSLPA_					0	0	0			REV__ENST00000270162.6_1_21:44836209-44836353:-|nuORF	REV__ENST00000270162.6_1_21:44836209-44836353:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2743835449219	2	509.2844	1016.55425	0.86195	0.00043898	2.4367	0.001241	3.2986	0.0016799	509.2854520638567	71.056	0.2562	70.764	70.542	70.798	-0.29291					7	5	2	0	0	0	0.03519	1	8553	8553		27.882	0	1	521340	+		15188	29797	10762	10781	16507	16507					0.046632247287675455
EVWASSTAM	9	Oxidation (M)	_EVWASSTAM(Oxidation (M))_		EVWASSTAM(1)		EVWASSTAM(56)	0	0	1		ENST00000568964.5_1_16:931452-931491:-|nuORF	ENST00000568964.5_1_16:931452-931491:-|nuORF	ENST00000568964.5_1_16:931452-931491:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.21820068359375	2	499.2184	996.422247	-0.073445	-3.6665E-05	-0.10639	-5.3111E-05	-0.17983	-8.9776E-05	499.21823760934916	32.389	0.7966	32.152	31.867	32.664	-0.23666					51	18	4	0	0	0	0.55828	1	2220	2220		55.504	7.8469	1	3192800			15189	16996	10763	10782	16508	16508		545			-0.07610748350498397
EVWGKARKS	9	Unmodified	_EVWGKARKS_					0	0	0		ENST00000409988.7_1_2:201171034-201171265:+|nuORF	ENST00000409988.7_1_2:201171034-201171265:+|nuORF	ENST00000409988.7_1_2:201171034-201171265:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7852172851562	2	530.79854	1059.58253	-0.65725	-0.00034887	2.3313	0.0012375	1.6741	0.00088859	530.7996298933635	53.49	0.10485	53.49	53.404	53.509	0					4	2	2	0	0	0	0.024477	1	5788	5788		14.865	0	1	91395			15190	13799	10764	10783	16509	16509					0.05511967428697062
EVWLRSDTC	9	Unmodified	_EVWLRSDTC_					0	0	0			REV__TLL2|p.S436C|1|0.32|ENSG00000095587|chr10:96397263-96397263|G/C|missense_variant	REV__TLL2|p.S436C|1|0.32|ENSG00000095587|chr10:96397263-96397263|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.217041015625	2	554.758223	1107.50189	-0.037076	-2.0568E-05	-3.2777	-0.0018183	-3.3148	-0.0018389	554.756144779699	70.324	0.49103	70.068	69.686	70.177	-0.25539					21	11	2	0	0	0	0.024535	1	8160	8160		7.1934	0	1	500440	+		15191	37697	10765	10784	16510	16510					-0.04755681676488166
EVWVPQGR	8	Unmodified	_EVWVPQGR_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7869873046875	2	485.758884	969.503215	-0.80613	-0.00039158	0.54777	0.00026608	-0.25836	-0.0001255	485.75896204264325	45.151	0.61525	45.002	44.697	45.312	-0.1488					23	17	2	0	0	0	0.027866	1	4316	4316		24.203	4.206	1	138650	+		15192	29240	10766	10785	16511	16511					0.017243204745682306
EVYEKVVD	8	Unmodified	_EVYEKVVD_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant;ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.27215576171875	2	490.75039	979.486227	-0.83596	-0.00041025	3.1944	0.0015676	2.3584	0.0011574	490.7514123200003	31.171	0.47977	30.93	30.669	31.149	-0.24109					28	11	4	0	0	0	0.027866	1	2048	2048		34.173	13.691	1	325310			15193	9775	10767	10786	16512	16512					-0.004336449219067617
EVYFPRNV	8	Unmodified	_EVYFPRNV_					0	0	0		ENSG00000166349|ENST00000299440|RAG1;nc|ENSG00000166349|P15918-2|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2960815429688	2	512.266542	1022.51853	-0.29265	-0.00014992	0.67919	0.00034793	0.38654	0.00019801	512.267042208291	65.458	0.38988	65.495	65.355	65.745	0.037384					16	10	2	0	0	0	0.027866	1	7659	7659		15.642	4.7763	1	95511			15194	7546	10768	10787	16513	16513					0.00817187271752573
EVYKAFDLT	9	Unmodified	_EVYKAFDLT_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3078002929688	2	543.279315	1084.54408	-0.37666	-0.00020463	-0.43354	-0.00023553	-0.8102	-0.00044016	543.2788796315488	87.1	1.0343	87.065	86.734	87.769	-0.035355					41	24	3	0	0	0	0.024495	1	10998	10998		19.997	0	1	152340			15195	5917	10769	10788	16514	16514					0.005186170035130999
EVYKAFDLT	9	Unmodified	_EVYKAFDLT_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.279315	1084.54408	-0.30411	-0.00016522	-0.45191	-0.00024551	-0.75602	-0.00041073	543.2787194155869	87.146	0.59003	87.146	86.816	87.406	0	0.1785	-0.00061855	NaN	30.318	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161120			15196	5917	10769	10788							0.005186170035130999
EVYKAFDLT	9	Unmodified	_EVYKAFDLT_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.279315	1084.54408	-0.13988	-7.5993E-05	-0.3484	-0.00018928	-0.48828	-0.00026527	543.2789932123607	87.155	0.84007	87.176	86.761	87.601	0.021263	0.20846	-0.00050608	NaN	30.318	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173450			15197	5917	10769	10788							0.005186170035130999
EVYKAFDLT	9	Unmodified	_EVYKAFDLT_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.279315	1084.54408	-0.31262	-0.00016984	0.81158	0.00044092	0.49896	0.00027107	543.2792840992525	87.001	1.502	86.814	85.644	87.146	-0.18695	-0.15381	0.00075431	NaN	30.318	49	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179420			15198	5917	10769	10788							0.005186170035130999
EVYKAFDLT	9	Unmodified	_EVYKAFDLT_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.279315	1084.54408	0.35254	0.00019153	0.38351	0.00020835	0.73605	0.00039988	543.2793038609013	86.944	0.98483	86.801	86.103	87.088	-0.14217	-0.16614	0.00028919	NaN	30.318	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170690			15199	5917	10769	10788							0.005186170035130999
EVYKAFDLT	9	Unmodified	_EVYKAFDLT_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.279315	1084.54408	-0.58743	-0.00031914	0.83642	0.00045441	0.249	0.00013528	543.2795331542543	86.941	1.1593	86.804	85.962	87.122	-0.13734	-0.16403	0.00078131	NaN	30.318	40	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152150			15200	5917	10769	10788							0.005186170035130999
EVYKQIKT	8	Unmodified	_EVYKQIKT_					0	0	0		ENST00000523638.5_1_19:37006542-37016108:-|nuORF	ENST00000523638.5_1_19:37006542-37016108:-|nuORF	ENST00000523638.5_1_19:37006542-37016108:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.76513671875	2	504.78985	1007.56515	-0.50067	-0.00025273	-1.2261	-0.00061895	-1.7268	-0.00087168	504.79013571557323	80.06	0.25186	80.081	79.98	80.232	0.021439					8	5	2	0	0	0	0.027866	1	9880	9880		34.173	0	1	67920			15201	16046	10770	10789	16515	16515					0.06166627103038991
EVYNRCFR	8	Unmodified	_EVYNRCFR_					0	0	0			REV__ENSG00000154342|ENST00000284523|WNT3A	REV__ENSG00000154342|ENST00000284523|WNT3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.8087158203125	2	543.761101	1085.50765	0.14369	7.8131E-05	2.2177	0.0012059	2.3614	0.001284	544.2641379470164	101.61	0.44524	101.48	101.31	101.76	-0.13156					12	9	2	0	0	0	0.027866	1	12589	12589		33.516	4.366	1	27621	+		15202	24956	10771	10790	16516	16516					-0.03168538374188756
EVYTCMCFL	9	Unmodified	_EVYTCMCFL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF;ENST00000487188.1_1_1:12371595-12395946:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8135375976562	2	554.729232	1107.44391	-0.42793	-0.00023739	2.3997	0.0013312	1.9718	0.0010938	554.7308993129317	51.452	0.50211	51.175	50.891	51.393	-0.27643					17	12	2	0	0	0	0.024541	1	5268	5268		17.365	11.807	1	113070			15203	1119	10772	10791	16517	16517					-0.10551402917803898
EWCHYEFY	8	Unmodified	_EWCHYEFY_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.7745971679688	2	588.726392	1175.43823	0.11707	6.8921E-05	-3.5905	-0.0021138	-3.4735	-0.0020449	588.7238751125602	79.801	0.54505	79.554	79.32	79.865	-0.2465					27	12	4	0	0	0	0.027866	1	9575	9575		19.36	0	1	188760			15204	8441	10773	10792	16518	16518					-0.1424704211358403
EWDSATKGFEP	11	Unmodified	_EWDSATKGFEP_					0	0	0			REV__ENST00000541294.1_1_18:33739943-33744659:+|nuORF	REV__ENST00000541294.1_1_18:33739943-33744659:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.7849731445312	2	633.785492	1265.55643	-0.93114	-0.00059015	0.034502	2.1867E-05	-0.89664	-0.00056828	633.7854170618903	42.827	0.71785	42.714	42.464	43.182	-0.11253					48	18	4	0	0	0	1.0123	1	3881	3881		18.262	0	1	2647300	+		15205	34768	10774	10793	16519	16519					-0.0657239132410723
EWEPAWMFLNR	11	Oxidation (M)	_EWEPAWM(Oxidation (M))FLNR_		EWEPAWM(1)FLNR		EWEPAWM(47)FLNR	0	0	1		nc|ENSG00000172426|Q9H1X1-2|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.9023132324219	3	498.899333	1493.67617	-0.021913	-1.0932E-05	4.4903	0.0022402	4.4684	0.0022293	498.90194954585684	43.798	1.5031	43.829	43.486	44.989	0.030827					153	42	8	0	0	0	0.95317	1	4103	4103		47.228	15.194	1	49049000			15206	18519	10775	10794	16520	16520		588			-0.050921012511707886
EWFHILVNELN	11	Unmodified	_EWFHILVNELN_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2878723144531	3	471.910227	1412.70885	-0.57202	-0.00026994	-0.19183	-9.0525E-05	-0.76385	-0.00036047	472.2452631326009	30.411	0.45667	30.233	29.997	30.453	-0.17817					15	10	2	0	0	0	0.024816	1	1907	1907		21.78	0	1	311800	+		15207	28501	10776	10795	16521	16521					0.019004291433475373
EWFLERVK	8	Unmodified	_EWFLERVK_					0	0	0		ENST00000335730.6_1_18:44089558-44181581:-|nuORF	ENST00000335730.6_1_18:44089558-44181581:-|nuORF	ENST00000335730.6_1_18:44089558-44181581:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7747802734375	2	553.803291	1105.59203	0.15021	8.3185E-05	-4.2739	-0.0023669	-4.1237	-0.0022837	553.8011122392893	57.393	0.55214	57.19	56.996	57.549	-0.20208					39	14	4	0	0	0	0.027866	1	6315	6315		42.396	0	1	549790			15208	12396	10777	10796	16522	16522					0.0434573571421879
EWGVPHCLT	9	Unmodified	_EWGVPHCLT_					0	0	0		ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1	ENSG00000152767|ENST00000319562|FARP1	ENSG00000152767|ENST00000319562|FARP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7929077148438	2	521.244752	1040.47495	-0.96758	-0.00050435	3.7845	0.0019726	2.8169	0.0014683	521.246467709192	45.003	0.48569	44.854	44.662	45.148	-0.1488					22	13	2	0	0	0	0.024323	1	4347	4347		44.117	7.0883	1	307950			15209	6297	10778	10797	16523	16523					-0.04366745497031843
EWHICGCQTL	10	Unmodified	_EWHICGCQTL_					0	0	0			REV__ENST00000407558.8_1_16:3534964-3535735:+|nuORF	REV__ENST00000407558.8_1_16:3534964-3535735:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	595.2590942382812	2	595.260076	1188.5056	0.018876	1.1236E-05	-1.4017	-0.00083435	-1.3828	-0.00082312	595.2590905917706	76.159	0.91277	76.171	75.863	76.775	0.011642					71	22	4	0	0	0	0.62431	1	9300	9300		74.255	2.9593	1	2307100	+		15210	30922	10779	10798	16524	16524					-0.08111335174271517
EWIGLGPAQR	10	Unmodified	_EWIGLGPAQR_					0	0	0		nc|ENSG00000182983|Q6ZS27-3|ZNF662	nc|ENSG00000182983|Q6ZS27-3|ZNF662	nc|ENSG00000182983|Q6ZS27-3|ZNF662	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.8013305664062	2	563.803823	1125.59309	-0.14728	-8.3039E-05	1.334	0.00075212	1.1867	0.00066908	563.8027857274413	107.08	0.742	107.08	106.7	107.44	-0.003479					75	24	4	0	0	0	0.96965	1	13727	13727		49.442	10.189	1	189000			15211	18575	10780	10799	16525	16525					0.035319500831292316
EWKNKKIV	8	Unmodified	_EWKNKKIV_					0	0	0			REV__ENSG00000189186|ENST00000451261|DCAF8L2	REV__ENSG00000189186|ENST00000451261|DCAF8L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2976684570312	2	522.813659	1043.61277	0.04756	2.4865E-05	1.1891	0.00062169	1.2367	0.00064655	522.8141420174584	52.209	0.41515	52.024	51.778	52.193	-0.18404					24	10	3	0	0	0	0.027866	1	5382	5382		53.351	16.192	1	788680	+		15212	28107	10781	10800	16526	16526					0.09270326093883341
EWLIEHKYI	9	Unmodified	_EWLIEHKYI_					0	0	0		ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.82958984375	2	615.829506	1229.64446	-0.82448	-0.00050774	1.1215	0.00069063	0.29698	0.00018289	615.8299733499852	95.885	2.1547	95.885	95.35	97.504	0					105	49	4	0	0	0	0.37611	1	12234	12234		67.494	4.0672	1	1048500			15213	7533	10782	10801	16527	16527					0.03882274057173163
EWPVPLTGP	9	Unmodified	_EWPVPLTGP_					0	0	0			REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.79547119140625	2	498.263468	994.512382	-0.59124	-0.00029459	-3.2883	-0.0016385	-3.8796	-0.0019331	498.2619386928071	56.067	0.46498	56.165	55.894	56.359	0.097897					19	12	2	0	0	0	0.024405	1	6176	6176		44.117	26.752	1	151400	+		15214	31448	10783	10802	16528	16528					0.014906690402199274
EWPVPLTGP	9	Unmodified	_EWPVPLTGP_					0	0	0			REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	REV__ENST00000379789.8_1_10:6275938-6276049:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.263468	994.512382	-0.026844	-1.3375E-05	-3.6625	-0.0018249	-3.6894	-0.0018383	498.26136705603767	56.225	0.35408	56.225	56.07	56.424	0	0.018526	-8.0106E-05	NaN	44.117	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198590	+		15215	31448	10783	10802							0.014906690402199274
EWQSNVKLE	9	Unmodified	_EWQSNVKLE_					0	0	0			REV__ENSG00000236761|ENST00000314099|CTAGE9	REV__ENSG00000236761|ENST00000314099|CTAGE9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.83203125	2	566.785296	1131.55604	1.0877	0.00061647	-3.9616	-0.0022454	-2.874	-0.0016289	566.7827597559374	17.895	0.34915	17.741	17.557	17.906	-0.15403					14	6	4	0	0	0	0.024527	1	218	218		24.519	0	1	63386	+		15216	28936	10784	10803	16529	16529					-0.0044776625329632225
EWRQKSLYV	9	Unmodified	_EWRQKSLYV_					0	0	0			REV__nc|ENSG00000050628|P43115-3|PTGER3	REV__nc|ENSG00000050628|P43115-3|PTGER3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.214599609375	3	403.552262	1207.63496	0.030322	1.2237E-05	3.1208	0.0012594	3.1511	0.0012716	403.5534171698213	28.846	0.54534	28.849	28.547	29.092	0.0031357					18	12	2	0	0	0	0.0245	1	1660	1660		44.377	17.33	1	68696	+		15217	20162	10785	10804	16530	16530					0.03944505771664808
EWSAAMQTS	9	Unmodified	_EWSAAMQTS_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.7137756347656	2	505.716024	1009.4175	-1.0134	-0.00051249	-3.3952	-0.001717	-4.4086	-0.0022295	505.7147543516341	29.365	1.4537	29.12	28.241	29.695	-0.24524					105	33	5	0	0	0	0.82115	1	1813	1813		37.812	8.662	1	1846100	+		15218	24316	10786	10805	16531	16531					-0.0868363249325057
EWSVQPTPN	9	Unmodified	_EWSVQPTPN_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN;REV__OBSCN-CASZ1|1|fusion	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.8008422851562	2	529.251089	1056.48762	-0.99236	-0.00052521	4.0208	0.002128	3.0284	0.0016028	529.2529979134063	38.618	4.17	38.396	37.348	41.518	-0.22149					188	111	3	0	0	0	0.023635	1	3204	3204		76.774	9.2805	1	1485400	+		15219	36798;24957;37301	10787	10806	16532	16532					-0.038360108331289666
EWVERSTSGS	10	Unmodified	_EWVERSTSGS_					0	0	0			REV__nc|ENSG00000177338|Q8N7U9|LINC00469	REV__nc|ENSG00000177338|Q8N7U9|LINC00469	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7357788085938	2	569.262185	1136.50982	-0.98191	-0.00055897	4.3713	0.0024884	3.3894	0.0019294	569.2643863495464	40.35	0.41712	40.12	39.891	40.308	-0.2302					22	10	3	0	0	0	0.03519	1	3436	3436		44.377	7.2181	1	363250	+		15220	36972	10788	10807	16533	16533					-0.052978311553715685
EYCNGGDLADY	11	Unmodified	_EYCNGGDLADY_					0	0	0		ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.158447265625	3	407.157249	1218.44992	0.18351	7.4717E-05	3.005	0.0012235	3.1885	0.0012982	407.1583412805475	34.958	0.79283	34.746	34.44	35.233	-0.21246					50	19	4	0	0	0	0.99648	1	2605	2605		37.6	5.9656	1	1103000			15221	8716;1749	10789	10808	16534	16534					-0.15056889880884228
EYCNGGDLADY	11	Unmodified	_EYCNGGDLADY_					0	0	0		ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	407.157249	1218.44992	0.31456	0.00012807	2.9852	0.0012154	3.2997	0.0013435	407.15834141623776	35.025	0.70802	34.81	34.508	35.216	-0.21555	0.053944	-0.0003759	NaN	37.6	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1264800			15222	8716;1749	10789	10808							-0.15056889880884228
EYCNGGDLADY	11	Unmodified	_EYCNGGDLADY_					0	0	0		ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ENSG00000083290|ENST00000395544|ULK2;ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	407.157249	1218.44992	-0.5471	-0.00022276	3.6723	0.0014952	3.1252	0.0012724	407.15867246452336	34.899	0.62089	34.712	34.402	35.023	-0.18675	-0.043755	0.00046339	NaN	37.6	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1294400			15223	8716;1749	10789	10808							-0.15056889880884228
EYDCFYHNL	9	Unmodified	_EYDCFYHNL_					0	0	0			REV__ENSG00000179615|ENST00000641114|OR2AP1	REV__ENSG00000179615|ENST00000641114|OR2AP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.55084228515625	3	401.830696	1202.47026	0.91857	0.00036911	-2.018	-0.00081089	-1.0994	-0.00044178	402.1650236207701	23.21	0.27549	23.008	22.92	23.195	-0.20193					7	5	2	0	0	0	0.024527	1	923	923		24.519	7.0512	1	14365	+		15224	27282	10790	10809	16535	16535					-0.12287674430444895
EYDEDYIVY	9	Unmodified	_EYDEDYIVY_					0	0	0			REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.7515258789062	2	604.753327	1207.4921	-0.88939	-0.00053786	-2.7712	-0.0016759	-3.6606	-0.0022138	604.7514295615566	62.815	1.7464	62.631	62.377	64.124	-0.18386					89	49	3	0	0	0	0.88411	1	7074	7074		33.516	0.70317	1	3487300	+		15225	37745	10791	10810	16536	16536					-0.10334591200899013
EYDEDYIVY	9	Unmodified	_EYDEDYIVY_					0	0	0			REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.254150390625	2	604.753327	1207.4921	-0.29399	-0.00017779	-2.5457	-0.0015395	-2.8397	-0.0017173	604.7515532332277	62.922	1.7409	62.664	62.448	64.188	-0.25824					102	47	3	0	0	0	0.75282	2	7063	7063;7068		42.474	6.0277	1	3454400	+		15226	37745	10791	10810	16537;16538	16537					-0.10334591200899013
EYDGNILLR	9	Unmodified	_EYDGNILLR_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.8104248046875	2	546.787838	1091.56112	-1.1754	-0.00064268	1.1647	0.00063685	-0.010664	-5.8311E-06	546.7885318957984	43.396	0.49751	43.17	42.951	43.449	-0.22596					32	13	3	0	0	0	0.024477	1	3997	3997		44.117	11.304	1	748570	+		15227	34459	10792	10811	16539	16539					0.019005376093446102
EYGMSMIETL	10	Oxidation (M)	_EYGMSM(Oxidation (M))IETL_		EYGM(0.024)SM(0.976)IETL		EYGM(-16)SM(16)IETL	0	0	1			REV__ENST00000588329.5_1_19:13056723-13059660:+|nuORF	REV__ENST00000588329.5_1_19:13056723-13059660:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	595.2598266601562	2	595.259407	1188.50426	-1.1638	-0.00069278	1.1191	0.00066618	-0.044685	-2.6599E-05	595.2599160593256	76.395	0.95702	76.166	75.815	76.772	-0.22843					63	23	3	0	0	0	0.52982	1	9396	9396		84.916	13.62	2	2419200	+		15228	27251	10793	10812	16540	16540		808			-0.08245014053704836
EYKALHDAV	9	Unmodified	_EYKALHDAV_					0	0	0		RNF213|p.R4338H|1|0.6|ENSG00000173821|chr17:80374528-80374528|G/A|missense_variant	RNF213|p.R4338H|1|0.6|ENSG00000173821|chr17:80374528-80374528|G/A|missense_variant	RNF213|p.R4338H|1|0.6|ENSG00000173821|chr17:80374528-80374528|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2913818359375	2	523.269281	1044.52401	0.8698	0.00045514	1.2234	0.00064015	2.0932	0.0010953	523.2698811133486	18.996	0.54328	18.996	18.774	19.317	0					15	10	2	0	0	0	0.024495	1	367	367		19.997	0	1	95224			15229	37840	10794	10813	16541	16541					0.003528660635538472
EYLDEMQDL	9	Unmodified	_EYLDEMQDL_					0	0	0			REV__ENSG00000198356|ENST00000357332|GET3	REV__ENSG00000198356|ENST00000357332|GET3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.3059692382812	2	578.247354	1154.48016	-0.2224	-0.0001286	-0.95561	-0.00055258	-1.178	-0.00068118	578.2483251581474	75.741	0.45815	75.566	75.351	75.809	-0.17548					15	11	2	0	0	0	0.024495	1	8998	8998		34.173	0	1	97085	+		15230	28414	10795	10814	16542	16542					-0.09090531215724695
EYLSTDSCSL	10	Unmodified	_EYLSTDSCSL_					0	0	0			REV__ENSG00000203661|ENST00000641363|OR2T5;REV__ENSG00000196944|ENST00000366473|OR2T4	REV__ENSG00000203661|ENST00000641363|OR2T5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8152465820312	2	559.239529	1116.46451	-0.38029	-0.00021267	-2.7888	-0.0015596	-3.1691	-0.0017723	559.237716715638	81.851	0.48422	81.851	81.711	82.195	0					16	11	2	0	0	0	0.03519	1	10187	10187		42.396	10.866	1	125960	+		15231	27508;28242	10796	10815	16543	16543					-0.08906817732781747
EYLSVTRDI	9	Unmodified	_EYLSVTRDI_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.279296875	2	548.287671	1094.56079	-0.94177	-0.00051636	-2.693	-0.0014765	-3.6348	-0.0019929	548.7879897965422	77.825	0.7533	77.841	77.32	78.073	0.015907					21	17	2	0	0	0	0.024344	1	9547	9547		37.812	3.639	1	78889	+		15232	27334	10797	10816	16544	16544					0.017291178894765835
EYLWKPILLLI	11	Unmodified	_EYLWKPILLLI_					0	0	0			REV__nc|ENSG00000162594|Q5VWK5-6|IL23R	REV__nc|ENSG00000162594|Q5VWK5-6|IL23R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.6239013671875	3	467.623246	1399.84791	0.37526	0.00017548	0.70025	0.00032745	1.0755	0.00050293	467.6235097930596	107.2	0.48961	107.05	106.83	107.32	-0.15771					55	18	4	0	0	0	1.0684	1	13321	13321		20.03	9.4437	1	578270	+		15233	25458	10798	10817	16545	16545					0.1639799877882524
EYPILEKEL	9	Unmodified	_EYPILEKEL_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.81103515625	2	567.308072	1132.60159	-0.2221	-0.000126	3.0203	0.0017134	2.7982	0.0015875	567.8112547471636	69.403	0.94573	69.181	68.528	69.474	-0.22245					41	22	2	0	0	0	0.048057	2	8040	8040;8050		129.42	7.7223	1	2154200			15234	4997	10799	10818	16546;16547	16546					0.04059459209088345
EYQRKLEK	8	Unmodified	_EYQRKLEK_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3035278320312	2	547.303655	1092.59276	-0.014614	-7.9982E-06	0.1038	5.6812E-05	0.089189	4.8813E-05	547.3036205754988	37.252	1.0608	37.059	36.735	37.796	-0.193					68	27	4	0	0	0	0.93274	1	2982	2982		47.916	0	1	4318700	+		15235	37528	10800	10819	16548	16548					0.050165303632638825
EYRLFLKTKK	10	Unmodified	_EYRLFLKTKK_					0	0	0			REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.6014709472656	3	442.602845	1324.78671	0.13106	5.8006E-05	-4.4046	-0.0019495	-4.2735	-0.0018915	442.6009585536604	102.32	0.56578	102.33	102.02	102.59	0.0073471					40	12	6	0	0	0	1.118	1	13067	13067		20.03	0.40354	1	563770	+		15236	34548	10801	10820	16549	16549					0.13730486799340724
EYRNLNTW	8	Unmodified	_EYRNLNTW_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6;nc|ENSG00000155754|Q53TS8-2|C2CD6;nc|ENSG00000155754|Q53TS8-3|C2CD6;nc|ENSG00000155754|Q53TS8-1|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.2639770507812	2	548.26453	1094.51451	-0.1015	-5.5651E-05	-0.59972	-0.0003288	-0.70122	-0.00038446	548.2641849123255	45.926	0.80438	45.829	45.564	46.368	-0.096649					69	21	4	0	0	0	0.50239	1	4428	4428		85.359	14.064	1	13003000			15237	6486	10802	10821	16550	16550					-0.028969022219598628
EYSKQMQRCT	10	Unmodified	_EYSKQMQRCT_					0	0	0		ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENST00000521233.1_1_6:114279792-114292096:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.1950988769531	3	425.19364	1272.55909	1.1775	0.00050066	2.1061	0.0008955	3.2836	0.0013962	425.1944156659474	22.831	0.60139	22.629	22.33	22.932	-0.20198					35	12	4	0	0	0	1.1295	1	816	816		26.063	0.9374	1	444790			15238	15998	10803	10822	16551	16551					-0.06628582462417398
EYSRHETHS	9	Unmodified	_EYSRHETHS_					0	0	0			REV__ENSG00000242852|ENST00000397732|ZNF709	REV__ENSG00000242852|ENST00000397732|ZNF709	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2769165039062	2	573.252151	1144.48975	-1.0586	-0.00060682	-4.4675	-0.002561	-5.526	-0.0031678	573.2494753423074	26.165	1.2526	26.002	25.758	27.011	-0.16331					77	33	3	0	0	0	0.024523	1	1252	1252		29.15	8.2026	1	688320	+		15239	28983	10804	10823	16552	16552					-0.07671582095326812
EYSRRRSY	8	Unmodified	_EYSRRRSY_					0	0	0			REV__ENSG00000170236|ENST00000532404|USP50	REV__ENSG00000170236|ENST00000532404|USP50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.7830200195312	2	558.780879	1115.5472	-0.25045	-0.00013995	2.659	0.0014858	2.4085	0.0013458	558.7822430699233	36.532	0.66703	36.327	36.056	36.723	-0.20518					39	16	3	0	0	0	0.71833	1	2870	2870		65.803	7.0212	1	1582200	+		15240	26446	10805	10824	16553	16553					-0.005946950990846744
EYSSPECCKP	10	Unmodified	_EYSSPECCKP_					0	0	0		nc|ENSG00000138764|Q16589-2|CCNG2;ENSG00000138764|ENST00000316355|CCNG2;ENST00000497512.5_1_4:78078410-78106259:+|nuORF	nc|ENSG00000138764|Q16589-2|CCNG2	nc|ENSG00000138764|Q16589-2|CCNG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.7275390625	2	571.728274	1141.442	0.54204	0.0003099	-0.90168	-0.00051552	-0.35965	-0.00020562	571.7276082526246	51.805	1.055	51.62	51.218	52.273	-0.18404					76	27	4	0	0	0	1.0719	1	5317	5317		36.447	2.2742	1	4697500			15241	5281	10806	10825	16554	16554					-0.12306740402073046
EYVEHLKVIN	10	Unmodified	_EYVEHLKVIN_					0	0	0			REV__ENSG00000163673|ENST00000636136|DCLK3	REV__ENSG00000163673|ENST00000636136|DCLK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3361206054688	2	622.337695	1242.66084	0.63113	0.00039278	-2.511	-0.0015627	-1.8799	-0.0011699	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.1307	1	13520	13520		26.693	4.733	1	1535400	+		15242	25615	10807	10826	16555	16555					0.04921355223291357
EYVKVILKN	9	Unmodified	_EYVKVILKN_					0	0	0			REV__ENSG00000178021|ENST00000317802|TSPYL6	REV__ENSG00000178021|ENST00000317802|TSPYL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.332275390625	2	553.334424	1104.6543	0.59374	0.00032854	-4.2368	-0.0023444	-3.6431	-0.0020159	553.3319086030377	95.481	1.1629	95.358	94.985	96.148	-0.12251					95	26	5	0	0	0	0.96906	1	11767	11767		26.693	2.1737	1	4038100	+		15243	27158	10808	10827	16556	16556					0.10615462062582992
EYVYWYRQ	8	Unmodified	_EYVYWYRQ_					0	0	0		nc|ENSG00000211807|A0A087WT03|TRAV26-1	nc|ENSG00000211807|A0A087WT03|TRAV26-1	nc|ENSG00000211807|A0A087WT03|TRAV26-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5548095703125	3	402.857463	1205.55056	0.422	0.00017001	3.3298	0.0013414	3.7518	0.0015114	402.8587312192702	22.352	0.74357	22.166	21.764	22.507	-0.18539					32	15	3	0	0	0	0.027866	1	789	789		37.159	1.9809	1	38872			15244	18700	10809	10828	16557	16557					-0.043994450451236844
EYYQPTALL	9	Unmodified	_EYYQPTALL_					0	0	0		ENSG00000225190|ENST00000430334|PLEKHM1	ENSG00000225190|ENST00000430334|PLEKHM1	ENSG00000225190|ENST00000430334|PLEKHM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.26904296875	2	549.279315	1096.54408	-0.39324	-0.000216	3.0485	0.0016745	2.6553	0.0014585	549.2809874629822	64.158	1.2319	63.93	63.624	64.856	-0.22773					40	30	2	0	0	0	0.024477	1	7411	7411		35.618	7.736	1	1083900			15245	10652	10810	10829	16558	16558					-0.0003338299648021348
EYYQPTALL	9	Unmodified	_EYYQPTALL_					0	0	0		ENSG00000225190|ENST00000430334|PLEKHM1	ENSG00000225190|ENST00000430334|PLEKHM1	ENSG00000225190|ENST00000430334|PLEKHM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.279315	1096.54408	-0.080317	-4.4117E-05	2.9567	0.001624	2.8764	0.0015799	549.2808393322443	64.162	0.71385	63.97	63.717	64.43	-0.19243	0.051049	0.00041267	NaN	40.778	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1066700			15246	10652	10810	10829							-0.0003338299648021348
FAAIAALAIKS	11	Unmodified	_FAAIAALAIKS_					0	0	0			REV__ENSG00000109321|ENST00000395748|AREG	REV__ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3295288085938	2	538.329142	1074.64373	-1.1713	-0.00063053	-0.0070715	-3.8068E-06	-1.1783	-0.00063434	538.3289163794492	44.747	0.86217	44.648	44.392	45.254	-0.099445					61	22	4	0	0	0	0.93459	3	4211	4188;4198;4211		49.536	7.1399	1	2131200	+		15247	21791	10811	10830	16559;16560;16561	16561					0.1093947940810267
FAAIAALAIKS	11	Unmodified	_FAAIAALAIKS_					0	0	0			REV__ENSG00000109321|ENST00000395748|AREG	REV__ENSG00000109321|ENST00000395748|AREG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3292236328125	2	538.329142	1074.64373	-0.86307	-0.00046461	-0.1496	-8.0532E-05	-1.0127	-0.00054515	538.3287427881261	44.903	0.86298	44.65	44.429	45.292	-0.25252					66	22	4	0	0	0	0.93459	2	4200	4200;4211		49.536	1.8787	1	2168000	+		15248	21791	10811	10830	16562;16563	16562					0.1093947940810267
FAALRVSV	8	Unmodified	_FAALRVSV_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.8885192871094	2	431.760895	861.507237	0.67188	0.00029009	-0.16035	-6.9235E-05	0.51153	0.00022086	431.760800817382	21.92	0.52477	21.735	21.486	22.011	-0.18516					14	10	2	0	0	0	0.027866	1	714	714		33.516	9.3128	1	18652	+		15249	27738	10812	10831	16564	16564					0.07094409968283344
FAAPARST	8	Unmodified	_FAAPARST_					0	0	0			REV__nc|ENSG00000157168|Q02297-9|NRG1	REV__nc|ENSG00000157168|Q02297-9|NRG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.56317138671875	2	410.719227	819.423902	0.0481	1.9756E-05	1.0211	0.00041937	1.0692	0.00043913	410.719570048281	32.672	0.69431	32.435	32.216	32.91	-0.23666					34	16	3	0	0	0	0.027866	1	2266	2266		33.516	1.5607	1	706790	+		15250	36810	10813	10832	16565	16565					0.00696673520440072
FAAPTLVW	8	Unmodified	_FAAPTLVW_					0	0	0			REV__ENSG00000134321|ENST00000382040|RSAD2	REV__ENSG00000134321|ENST00000382040|RSAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.7503662109375	2	452.749996	903.485439	0.36634	0.00016586	0.93176	0.00042186	1.2981	0.00058771	452.7497649388687	102.7	0.6462	102.7	102.37	103.02	-0.0046005					24	15	3	0	0	0	0.98906	1	13076	13076		39.021	1.993	1	288990	+		15251	23438	10814	10833	16566	16566					0.02983605219696983
FAASRIAF	8	Unmodified	_FAASRIAF_					0	0	0		nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4;nc|ENSG00000160193|P57081-3|WDR4	nc|ENSG00000160193|P57081-2|WDR4	nc|ENSG00000160193|P57081-2|WDR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.22625732421875	2	441.745245	881.475937	-1.1934	-0.0005272	-2.8696	-0.0012676	-4.0631	-0.0017948	441.7437740265145	29.582	0.79687	29.582	29.26	30.057	0					43	19	4	0	0	0	0.027866	1	1868	1868		28.254	8.8943	1	616720			15252	6788	10815	10834	16567	16567					0.030458369341772595
FAASRIAF	8	Unmodified	_FAASRIAF_					0	0	0		nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4;nc|ENSG00000160193|P57081-3|WDR4	nc|ENSG00000160193|P57081-2|WDR4	nc|ENSG00000160193|P57081-2|WDR4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	441.745245	881.475937	-0.27242	-0.00012034	-3.908	-0.0017264	-4.1805	-0.0018467	441.74333745884127	29.213	0.74535	29.291	28.979	29.724	0.078344	-0.17139	-0.00026847	NaN	28.254	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596640			15253	6788	10815	10834							0.030458369341772595
FACLLLLQLV	10	Unmodified	_FACLLLLQLV_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.7542724609375	2	566.843571	1131.67259	-1.1416	-0.00064712	4.3759	0.0024805	3.2343	0.0018334	566.8458933382468	50.277	0.42503	50.277	49.986	50.411	0					20	12	2	0	0	0	0.03519	1	5260	5260		37.159	0	1	148740	+		15254	20825	10816	10835	16568	16568					0.11201880712928869
FADDMYSLY	9	Oxidation (M)	_FADDM(Oxidation (M))YSLY_		FADDM(1)YSLY		FADDM(50)YSLY	0	0	1		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.731689453125	2	570.73134	1139.44813	0.050604	2.8881E-05	-0.012547	-7.1608E-06	0.038057	2.172E-05	570.7311651881213	72.497	2.6803	72.22	70.965	73.645	-0.2769					137	64	3	0	0	0	0.64155	1	8514	8514		50.025	17.212	1	593020			15255	9115	10817	10836	16569	16569		382			-0.11601898898857144
FADDMYSLY	9	Oxidation (M)	_FADDM(Oxidation (M))YSLY_		FADDM(1)YSLY		FADDM(74)YSLY	0	0	1		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.2353515625	2	570.73134	1139.44813	0.24845	0.0001418	2.6042	0.0014863	2.8526	0.0016281	571.2342038432577	69.541	1.2393	69.29	68.824	70.063	-0.25063					101	29	6	0	0	0	0.31247	1	8077	8077		73.975	13.571	1	1817800			15256	9115	10817	10836	16570	16570		382			-0.11601898898857144
FADDMYSLY	9	Oxidation (M)	_FADDM(Oxidation (M))YSLY_		FADDM(1)YSLY		FADDM(79)YSLY	0	0	1		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.2354736328125	2	570.73134	1139.44813	-0.098811	-5.6395E-05	2.6511	0.0015131	2.5523	0.0014567	570.7314283483871	69.515	1.1139	69.292	68.894	70.008	-0.22245					96	26	6	0	0	0	0.27161	1	8052	8052		79.451	6.8311	1	1571800			15257	9115	10817	10836	16571	16571		382			-0.11601898898857144
FADDMYSLY	9	Unmodified	_FADDMYSLY_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7333984375	2	562.733883	1123.45321	0.069174	3.8926E-05	0.15671	8.8183E-05	0.22588	0.00012711	562.7337288746746	78.789	1.2269	78.534	78.127	79.354	-0.25471					62	28	4	0	0	0	0.31247	3	9389	9389;9399;9413		73.975	28.023	1	1395200			15258	9115	10817	10837	16572;16573;16574	16572					-0.10357595036248313
FADDMYSLY	9	Unmodified	_FADDMYSLY_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.733642578125	2	562.733883	1123.45321	0.24775	0.00013942	-0.090201	-5.0759E-05	0.15755	8.8659E-05	562.7336192639214	78.719	1.1816	78.487	78.176	79.357	-0.23141					61	27	5	0	0	0	0.22754	3	9408	9397;9408;9421		85.359	39.408	1	1465900			15259	9115	10817	10837	16575;16576;16577	16576					-0.10357595036248313
FADDMYSLY	9	Unmodified	_FADDMYSLY_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.7337646484375	2	562.733883	1123.45321	-0.077491	-4.3607E-05	0.089798	5.0533E-05	0.012307	6.9256E-06	562.7337402941089	78.605	1.1455	78.45	78.17	79.315	-0.15592					66	26	5	0	0	0	0.29104	2	9373	9364;9373		76.847	21.426	1	1599000			15260	9115	10817	10837	16578;16579	16579					-0.10357595036248313
FADDVLLSV	9	Unmodified	_FADDVLLSV_					0	0	0		nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7613830566406	2	489.760758	977.506963	0.34761	0.00017025	2.2349	0.0010946	2.5825	0.0012648	489.76145989568886	86.938	1.4806	86.938	86.171	87.651	0					77	34	4	0	0	0	0.096521	1	10926	10926		111.65	5.2331	1	1900500			15261	18137	10818	10838	16580	16580					0.017309454577684846
FADDVLLSV	9	Unmodified	_FADDVLLSV_					0	0	0		nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.7608337402344	2	489.760758	977.506963	0.13651	6.6856E-05	2.311	0.0011319	2.4475	0.0011987	489.761533403093	86.927	1.6395	86.892	86.129	87.769	-0.035362					89	38	5	0	0	0	0.096521	1	10878	10878		111.65	5.2331	1	2005300			15262	18137	10818	10838	16581	16581					0.017309454577684846
FADDVLLSV	9	Unmodified	_FADDVLLSV_					0	0	0		nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7612609863281	2	489.760758	977.506963	0.017638	8.6386E-06	2.448	0.0011989	2.4656	0.0012076	489.76159588819837	86.899	1.8773	86.92	86.113	87.991	0.021255					84	44	4	0	0	0	0.039744	2	10836	10836;10850		133.81	14.256	1	1917500			15263	18137	10818	10838	16582;16583	16582					0.017309454577684846
FADDVLLSV	9	Unmodified	_FADDVLLSV_					0	0	0		nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.760758	977.506963	-0.38677	-0.00018943	3.9591	0.001939	3.5723	0.0017496	489.76250270300073	86.968	1.525	86.781	86.123	87.648	-0.18696	-0.059933	0.00086531	NaN	133.81	52	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530910			15264	18137	10818	10838							0.017309454577684846
FADDVLLSV	9	Unmodified	_FADDVLLSV_					0	0	0		nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.760758	977.506963	0.65566	0.00032112	2.8849	0.0014129	3.5406	0.001734	489.76200082921	86.904	1.514	86.762	86.278	87.792	-0.14217	-0.079131	-0.0001869	NaN	133.81	57	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436660			15265	18137	10818	10838							0.017309454577684846
FADDVLLSV	9	Unmodified	_FADDVLLSV_					0	0	0		nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	nc|ENSG00000102539|O43193-2|MLNR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.760758	977.506963	0.32005	0.00015675	3.1001	0.0015183	3.4201	0.001675	489.7620807040059	86.889	1.7085	86.752	85.919	87.627	-0.13734	-0.088818	2.3867E-05	NaN	133.81	62	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429860			15266	18137	10818	10838							0.017309454577684846
FADKIHLIN	9	Unmodified	_FADKIHLIN_					0	0	0		ENST00000426382.2_1_X:67290686-67290992:-|nuORF	ENST00000426382.2_1_X:67290686-67290992:-|nuORF	ENST00000426382.2_1_X:67290686-67290992:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.8004150390625	2	535.803291	1069.59203	-0.9597	-0.00051421	-3.6612	-0.0019617	-4.6209	-0.0024759	535.8010522118469	55.245	1.1906	55.099	54.533	55.723	-0.14609					72	32	4	0	0	0	0.62163	1	5918	5918		51.335	1.3109	1	5092700			15267	14084	10819	10839	16584	16584					0.06001735714244205
FADTLLIAD	9	Unmodified	_FADTLLIAD_					0	0	0			REV__ENSG00000168306|ENST00000302819|ACOX2	REV__ENSG00000168306|ENST00000302819|ACOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7613525390625	2	489.760758	977.506963	0.017638	8.6386E-06	2.448	0.0011989	2.4656	0.0012076	489.76159588819837	86.899	1.8773	86.92	86.113	87.991	0.021255					84	44	4	0	0	0	0.15029	1	10826	10826		99.375	0	1	1917500	+		15268	26247	10820	10840	16585	16585					0.017309454577684846
FADVVRLVS	9	Unmodified	_FADVVRLVS_					0	0	0		ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7689514160156	2	503.290017	1004.56548	-0.71435	-0.00035953	-0.25977	-0.00013074	-0.97412	-0.00049027	503.2896840789839	65.902	0.57512	65.651	65.27	65.845	-0.25112					23	13	2	0	0	0	0.024427	1	7492	7492		42.396	3.59	1	323790			15269	5757	10821	10841	16586	16586					0.06338046822907017
FAESLEIIL	9	Unmodified	_FAESLEIIL_					0	0	0		ENST00000338981.7_1_Y:14813910-14820570:+|nuORF	ENST00000338981.7_1_Y:14813910-14820570:+|nuORF	ENST00000338981.7_1_Y:14813910-14820570:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	517.7929077148438	2	517.792058	1033.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.61	1	100.62	100.12	101.12	0.010117								0	0	0	0.48029	1	12837	12837		55.504	9.5523	1				15270	12451	10822	10842	16587	16587					0.054120915259545654
FAFGAMVIYV	10	Unmodified	_FAFGAMVIYV_					0	0	0			REV__ENST00000448693.2_1_3:52740223-52740934:+|nuORF	REV__ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.3359375	2	559.291171	1116.56779	0.76297	0.00042672	-1.8312	-0.0010242	-1.0682	-0.00059743	559.2900043837598	19.511	0.3491	19.311	19.106	19.455	-0.2001					9	6	2	0	0	0	0.03519	1	435	435		35.201	1.0282	1	18326	+		15271	22154	10823	10843	16588	16588					0.014167592363492076
FAFGHSAPSP	10	Unmodified	_FAFGHSAPSP_					0	0	0			REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7749938964844	2	509.243067	1016.47158	0.15267	7.7748E-05	2.4118	0.0012282	2.5645	0.0013059	509.2437795850909	87.208	0.54536	87.172	86.817	87.363	-0.035355					20	12	2	0	0	0	0.03519	1	10915	10915		23.042	3.6825	1	178680	+		15272	31444	10824	10844	16589	16589					-0.03599672279392507
FAFGHSAPSP	10	Unmodified	_FAFGHSAPSP_					0	0	0			REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.243067	1016.47158	0.01041	5.3011E-06	3.7779	0.0019239	3.7883	0.0019292	509.2444541101958	87.255	0.59113	87.255	86.941	87.532	0	0.040304	0.00054727	NaN	23.042	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139450	+		15273	31444	10824	10844							-0.03599672279392507
FAFGHSAPSP	10	Unmodified	_FAFGHSAPSP_					0	0	0			REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.243067	1016.47158	0.57574	0.00029319	3.1875	0.0016232	3.7633	0.0019164	509.2443047750108	87.195	0.59173	87.216	86.968	87.56	0.021263	0.0016098	-5.3995E-05	NaN	23.042	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125400	+		15274	31444	10824	10844							-0.03599672279392507
FAFITFMF	8	Unmodified	_FAFITFMF_					0	0	0		ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.28228759765625	2	512.254057	1022.49356	-0.10773	-5.5184E-05	-4.1144	-0.0021076	-4.2221	-0.0021628	512.2515690008731	61.413	0.4181	61.205	61.089	61.507	-0.20796					12	9	2	0	0	0	0.027866	1	6891	6891		28.254	0.17279	1	193770			15275	3948	10825	10845	16590	16590					-0.01678583855175475
FAFLSALLGRV	11	Unmodified	_FAFLSALLGRV_					0	0	0			REV__ENSG00000172375|ENST00000648610|C2CD2L	REV__ENSG00000172375|ENST00000648610|C2CD2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.353759765625	2	597.355691	1192.69683	-0.1792	-0.00010705	-2.6078	-0.0015578	-2.787	-0.0016648	597.3535838614963	103.88	1.0548	103.75	103.23	104.29	-0.126					70	26	4	0	0	0	1.0592	1	12901	12901		22.58	0	1	669990	+		15276	26665	10826	10846	16591	16591					0.10818857190793096
FAFPLLLKL	9	Unmodified	_FAFPLLLKL_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3328857421875	2	531.341521	1060.66849	-0.24377	-0.00012952	2.4978	0.0013272	2.2541	0.0011977	531.8444365601953	106.85	0.093262	106.84	106.8	106.89	-0.003479					4	2	2	0	0	0	0.024541	1	13675	13675		20.482	8.275	1	59729			15277	4665	10827	10847	16592	16592					0.14058159281512417
FAGLSLQIGKG	11	Unmodified	_FAGLSLQIGKG_					0	0	0			REV__nc|ENSG00000131095|P14136-2|GFAP	REV__nc|ENSG00000131095|P14136-2|GFAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2611083984375	2	545.816399	1089.61824	0.64191	0.00035036	-1.1807	-0.00064446	-0.53882	-0.00029409	545.8156635433234	59.597	0.5574	59.4	59.132	59.689	-0.19742					24	13	2	0	0	0	0.024205	1	6635	6635		75.043	0	1	1291500	+		15278	36655	10828	10848	16593	16593					0.07702004885709357
FAGPQRLAF	9	Unmodified	_FAGPQRLAF_					0	0	0			REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.791015625	2	503.777077	1005.5396	1.0253	0.00051653	-1.6772	-0.00084494	-0.65189	-0.00032841	503.7760030099502	18.051	0.49191	17.895	17.705	18.197	-0.15637					19	9	3	0	0	0	0.024517	1	286	286		26.796	2.5934	1	87281	+		15279	30071	10829	10849	16594	16594					0.03705197371277791
FAGPQRLAF	9	Unmodified	_FAGPQRLAF_					0	0	0			REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.777077	1005.5396	-0.11201	-5.643E-05	-0.50849	-0.00025617	-0.6205	-0.0003126	503.7767177391474	18.078	0.44604	17.871	17.664	18.11	-0.20669	-0.0017685	0.0022207	NaN	26.796	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70789	+		15280	30071	10829	10849							0.03705197371277791
FAGPQRLAF	9	Unmodified	_FAGPQRLAF_					0	0	0			REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	REV__ENST00000302182.7_1_17:16284357-16284492:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.777077	1005.5396	3.3844	0.001705	-3.7322	-0.0018802	-0.34778	-0.0001752	503.77503454795027	18.095	0.39709	17.853	17.677	18.074	-0.24256	-0.020374	-0.0010273	NaN	26.796	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94668	+		15281	30071	10829	10849							0.03705197371277791
FAGRKKILD	9	Unmodified	_FAGRKKILD_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8170776367188	2	524.319109	1046.62366	-0.56663	-0.0002971	-1.9771	-0.0010366	-2.5437	-0.0013337	524.3180777991103	91.902	0.62648	91.893	91.494	92.121	-0.0082932					20	14	2	0	0	0	0.024495	1	11611	11611		34.173	5.9183	1	190280			15282	10472	10830	10850	16595	16595					0.10221728468172842
FAGRTHPPD	9	Unmodified	_FAGRTHPPD_					0	0	0			REV__ENST00000463931.1_1_7:44805313-44805562:+|nuORF	REV__ENST00000463931.1_1_7:44805313-44805562:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7792053222656	2	499.246141	996.477728	-1.3734	-0.00068568	-2.907	-0.0014513	-4.2804	-0.002137	499.2457696864612	65.439	0.61697	65.226	64.93	65.547	-0.21327					30	14	4	0	0	0	0.024523	1	7465	7465		21.96	0	1	227070	+		15283	32952	10831	10851	16596	16596					-0.02065154047852502
FAHSRQRL	8	Unmodified	_FAHSRQRL_					0	0	0			REV__ENST00000445355.7_1_10:135076558-135076645:-|nuORF	REV__ENST00000445355.7_1_10:135076558-135076645:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7749938964844	2	507.783225	1013.5519	0.12949	6.5753E-05	-2.4818	-0.0012602	-2.3523	-0.0011945	508.2818724454008	87.091	0.33783	87.056	86.941	87.279	-0.035355					12	7	2	0	0	0	0.027866	1	10915	10915		24.203	2.2429	1	58653	+		15284	32611	10832	10852	16597	16597					0.045662338343163356
FAHSRQRL	8	Unmodified	_FAHSRQRL_					0	0	0			REV__ENST00000445355.7_1_10:135076558-135076645:-|nuORF	REV__ENST00000445355.7_1_10:135076558-135076645:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.783225	1013.5519	0.09283	4.7137E-05	-0.2556	-0.00012979	-0.16277	-8.2654E-05	508.2841873097523	87	0.97857	87	86.3	87.278	0	-0.027935	0.0010736	NaN	21.96	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95016	+		15285	32611	10832	10852							0.045662338343163356
FAIFVLLTI	9	Unmodified	_FAIFVLLTI_					0	0	0		ENSG00000030304|ENST00000374448|MUSK;nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8201904296875	2	518.825704	1035.63685	-1.0339	-0.00053639	-2.375	-0.0012322	-3.4088	-0.0017686	518.8244557425375	80.758	1.0577	80.606	80.301	81.359	-0.15169					41	25	2	0	0	0	0.024183	1	9995	9995		60.294	2.4827	1	1097400			15286	1010	10833	10853	16598	16598					0.12046166527557034
FAIKISVLW	9	Unmodified	_FAIKISVLW_					0	0	0			REV__POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	REV__POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8262329101562	2	538.828778	1075.643	-0.4532	-0.0002442	-3.8021	-0.0020487	-4.2553	-0.0022929	538.826664240235	55.111	1.017	54.881	54.601	55.618	-0.23087					71	28	3	0	0	0	0.70186	1	5890	5890		45.952	1.8352	1	7408700	+		15287	22828	10834	10854	16599	16599					0.10820684759096366
FAILENKK	8	Unmodified	_FAILENKK_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MSMS	OPSCC_40_ClassI_Rep-2	5	481.787841796875	2	481.78711	961.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.209	1	31.024	30.524	31.524	-0.18503								0	0	0	0.35279	1	2051	2051		94.006	17.16	1				15288	1074	10835	10855	16600	16600					0.07734948311235712
FAILSPSPYL	10	Unmodified	_FAILSPSPYL_					0	0	0		ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3053588867188	2	554.307875	1106.6012	-0.20895	-0.00011582	-3.9343	-0.0021808	-4.1433	-0.0022967	554.3055608748607	75.799	1.3209	75.541	75.2	76.521	-0.25865					89	32	5	0	0	0	0.79525	1	8976	8976		60.972	0.85368	1	4250500			15289	16982	10836	10856	16601	16601					0.0521608427989122
FAILSPSPYL	10	Unmodified	_FAILSPSPYL_					0	0	0		ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3051147460938	2	554.307875	1106.6012	0.011079	6.1413E-06	-4.2967	-0.0023817	-4.2856	-0.0023756	554.3053712920872	75.686	1.1464	75.51	75.113	76.259	-0.17548					73	28	4	0	0	0	0.75995	2	8945	8945;8957		63.306	16.849	1	3973300			15290	16982	10836	10856	16602;16603	16602					0.0521608427989122
FAKEINYLE	9	Unmodified	_FAKEINYLE_					0	0	0			REV__ENST00000421869.5_1_2:26644175-26667095:+|nuORF	REV__ENST00000421869.5_1_2:26644175-26667095:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	563.792724609375	2	563.792589	1125.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.292	1	74.109	73.609	74.609	-0.18279								0	0	0	0.073652	1	8748	8748		98.629	0	1		+		15291	25154	10837	10857	16604	16604					0.012863058948369144
FAKFGKIVALN	11	Unmodified	_FAKFGKIVALN_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2469482421875	3	403.24477	1206.71248	2.4029	0.00096894	2.8148	0.001135	5.2176	0.002104	403.2458644662001	103.38	1.2051	103.38	102.9	104.11	-0.0046005					76	28	5	0	0	0	1.0764	1	13187	13187		17.833	0	1	2231700			15292	10361	10838	10858	16605	16605					0.11739143707859512
FAKILKEAI	9	Unmodified	_FAKILKEAI_					0	0	0			REV__ENSG00000173137|ENST00000308860|ADCK5	REV__ENSG00000173137|ENST00000308860|ADCK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.3002319335938	2	516.826235	1031.63792	-1.01	-0.000522	-0.64837	-0.0003351	-1.6584	-0.0008571	516.8264372414815	93.645	0.4142	93.651	93.476	93.89	0.0059814					14	9	2	0	0	0	0.024389	1	11796	11796		51.193	5.2204	1	109630	+		15293	26742	10839	10859	16606	16606					0.12336380896454102
FAKKKTLL	8	Unmodified	_FAKKKTLL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.8150939941406	2	474.81567	947.616788	-0.036893	-1.7517E-05	-0.3443	-0.00016348	-0.3812	-0.000181	474.8153769788614	24.828	0.69576	24.613	24.377	25.072	-0.2151					36	15	3	0	0	0	0.80469	1	1129	1129		58.782	12.83	1	988560			15294	1399	10840	10860	16607	16607					0.1408841558760514
FAKKKTLL	8	Unmodified	_FAKKKTLL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.8153076171875	2	474.81567	947.616788	-0.10854	-5.1535E-05	-0.054428	-2.5843E-05	-0.16297	-7.7378E-05	474.8155037595606	24.578	0.61045	24.403	24.21	24.821	-0.17484					28	13	4	0	0	0	0.47665	1	1087	1087		87.754	8.3033	1	791940			15295	1399	10840	10860	16608	16608					0.1408841558760514
FAKKKTLL	8	Unmodified	_FAKKKTLL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.8153991699219	2	474.81567	947.616788	1.9205	0.00091186	-2.2189	-0.0010536	-0.29849	-0.00014173	474.8144631323022	24.703	0.61291	24.522	24.285	24.898	-0.18089					30	13	3	0	0	0	0.93274	1	1093	1093		47.916	1.9636	1	728060			15296	1399	10840	10860	16609	16609					0.1408841558760514
FAKRLVPK	8	Unmodified	_FAKRLVPK_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.27783203125	2	479.813462	957.612371	0.87371	0.00041922	-2.1249	-0.0010196	-1.2512	-0.00060036	479.81238760352136	96.289	0.9886	96.152	95.936	96.924	-0.13671					28	22	2	0	0	0	0.027866	1	11903	11903		7.6903	0	1	124030	+		15297	25086	10841	10861	16610	16610					0.13186951164698257
FAKVVRIQ	8	Unmodified	_FAKVVRIQ_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2112731933594	2	480.803094	959.591636	-0.20816	-0.00010008	-0.83891	-0.00040335	-1.0471	-0.00050343	480.8025057487114	43.901	0.41284	43.796	43.583	43.996	-0.10468					24	10	3	0	0	0	0.027866	1	4033	4033		31.955	6.5047	1	594820	+		15298	20367	10842	10862	16611	16611					0.1102236078503438
FAKVVRIQ	8	Unmodified	_FAKVVRIQ_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.803094	959.591636	-1.1365	-0.00054645	0.24151	0.00011612	-0.89503	-0.00043033	480.80303314103304	44.054	0.41633	43.809	43.593	44.01	-0.2444	-0.004464	0.00049	NaN	24.203	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585260	+		15299	20367	10842	10862							0.1102236078503438
FALAYMLP	8	Unmodified	_FALAYMLP_					0	0	0			REV__ENSG00000104044|ENST00000354638|OCA2	REV__ENSG00000104044|ENST00000354638|OCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7724304199219	2	463.246232	924.477911	0.14605	6.7657E-05	1.7945	0.00083127	1.9405	0.00089893	463.2459224978313	26.495	0.63335	26.576	26.249	26.883	0.081293					31	14	4	0	0	0	0.027866	1	1309	1309		24.504	5.144	1	163560	+		15300	21412	10843	10863	16612	16612					0.012651296277795154
FALELLGSAL	10	Unmodified	_FALELLGSAL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.3005981445312	2	517.30005	1032.58555	-0.27569	-0.00014261	0.67353	0.00034842	0.39784	0.0002058	517.3002761995172	93.484	0.50684	93.484	93.051	93.558	0					28	11	3	0	0	0	0.13121	1	11877	11877		129.68	17.272	1	2210700	+		15301	29042	10844	10864	16613	16613					0.07055797762882321
FALFVGALL	9	Unmodified	_FALFVGALL_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.77667236328125	2	475.789121	949.56369	0.54955	0.00026147	-2.3431	-0.0011148	-1.7936	-0.00085337	475.7877569955411	71.71	0.18748	71.72	71.616	71.803	0.010468					6	4	2	0	0	0	0.024475	1	8620	8620		39.021	3.8208	1	39180	+		15302	20097	10845	10865	16614	16614					0.08689037804947475
FALGHMHG	8	Unmodified	_FALGHMHG_					0	0	0			REV__ENSG00000025293|ENST00000374012|PHF20	REV__ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2113037109375	2	435.207973	868.401392	1.0696	0.00046548	3.4203	0.0014886	4.4899	0.001954	435.2088547080744	99.031	1.6894	98.906	98.028	99.717	-0.12459					80	42	3	0	0	0	1.0574	1	12309	12309		24.504	1.4615	1	206790	+		15303	20020	10846	10866	16615	16615					-0.03807249148826486
FALHYIDLM	9	Unmodified	_FALHYIDLM_					0	0	0			REV__ENST00000303115.7_1_5:35877801-35877897:+|nuORF	REV__ENST00000303115.7_1_5:35877801-35877897:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.8076782226562	2	561.786253	1121.55795	-0.11298	-6.3473E-05	-3.5851	-0.0020141	-3.6981	-0.0020775	561.7840282875205	57.246	0.60744	57.081	56.71	57.318	-0.16431					37	16	3	0	0	0	0.024497	1	6431	6431		20.482	0	1	622950	+		15304	30088	10847	10867	16616	16616					0.0020357123096346186
FALKLCCLTPL	11	Unmodified	_FALKLCCLTPL_					0	0	0			REV__PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	REV__PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.8950500488281	3	407.895984	1220.66612	0.25622	0.00010451	-2.9587	-0.0012068	-2.7025	-0.0011023	407.8947313100723	75.391	1.1198	75.118	74.766	75.885	-0.27266					65	27	4	0	0	0	0.75915	1	8902	8902		60.167	7.9998	1	1547700	+		15305	24473	10848	10868	16617	16617					0.06461619489891746
FALMQRLRQV	10	Unmodified	_FALMQRLRQV_					0	0	0			REV__SLC9B2|p.C78F|1|0.49|ENSG00000164038|chr4:103066365-103066365|C/A|missense_variant	REV__SLC9B2|p.C78F|1|0.49|ENSG00000164038|chr4:103066365-103066365|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.2459716796875	3	421.244775	1260.7125	1.3545	0.00057059	1.9146	0.00080651	3.2691	0.0013771	421.24555285953164	17.464	0.89565	17.31	17.108	18.004	-0.15403					28	17	4	0	0	0	1.1237	1	180	180		21.686	0.65352	1	349460	+		15306	37511	10849	10869	16618	16618					0.09256820436189628
FALNVLVPS	9	Unmodified	_FALNVLVPS_					0	0	0			REV__ENST00000367264.6_2_1:202715309-202715363:-|nuORF	REV__ENST00000367264.6_2_1:202715309-202715363:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.73126220703125	2	480.28166	958.548768	-0.097887	-4.7014E-05	0.30789	0.00014787	0.21	0.00010086	480.2829518052647	31.69	0.36325	31.69	31.386	31.749	0					10	8	2	0	0	0	0.024381	1	2107	2107		29.15	0	1	21823	+		15307	31013	10850	10870	16619	16619					0.06783545936946211
FALPPRKP	8	Unmodified	_FALPPRKP_					0	0	0			REV__ENST00000502313.1_1_5:77940258-77940606:-|nuORF;REV__nc|ENSG00000067066|P23497|SP100	REV__nc|ENSG00000067066|P23497|SP100	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.75048828125	2	463.284537	924.554522	0.17081	7.9134E-05	0.29465	0.00013651	0.46546	0.00021564	463.28471392430896	49.862	0.51884	49.938	49.655	50.174	0.075546					24	14	2	0	0	0	0.027866	1	5077	5077		19.36	0	1	279080	+		15308	36464;33925	10851	10871	16620	16620					0.0892268923927304
FALSDIKAGT	10	Unmodified	_FALSDIKAGT_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26214599609375	2	511.779482	1021.54441	0.34418	0.00017614	2.9402	0.0015047	3.2844	0.0016809	512.2798867693762	84.113	0.39154	83.975	83.889	84.28	-0.13789					12	8	2	0	0	0	0.03519	1	10150	10150		40.778	22.454	1	77081			15309	7449	10852	10872	16621	16621					0.034500367233818
FALVFIDF	8	Unmodified	_FALVFIDF_					0	0	0			REV__ENST00000583582.5_1_17:37809763-37814496:+|nuORF	REV__ENST00000583582.5_1_17:37809763-37814496:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.2661437988281	2	486.265479	970.516405	0.67271	0.00032712	3.4435	0.0016745	4.1162	0.0020016	486.26724520147803	98.456	0.61772	98.32	98.063	98.68	-0.13625					27	13	3	0	0	0	0.94001	1	12185	12185		46.766	9.738	1	117820	+		15310	35552	10853	10873	16622	16622					0.02996758533947741
FALVFIDF	8	Unmodified	_FALVFIDF_					0	0	0			REV__ENST00000583582.5_1_17:37809763-37814496:+|nuORF	REV__ENST00000583582.5_1_17:37809763-37814496:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	486.265479	970.516405	0.67271	0.00032712	3.4435	0.0016745	4.1162	0.0020016	486.26724520147803	98.456	0.61772	98.32	98.063	98.68	-0.13625	0.0065913	0.00029404	NaN	46.766	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117820	+		15311	35552	10853	10873							0.02996758533947741
FALVLIVENHS	11	Unmodified	_FALVLIVENHS_					0	0	0		ENST00000370872.7_1_1:75188836-75188938:-|nuORF	ENST00000370872.7_1_1:75188836-75188938:-|nuORF	ENST00000370872.7_1_1:75188836-75188938:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3488159179688	2	621.348063	1240.68157	0.34141	0.00021214	2.6886	0.0016705	3.03	0.0018827	621.3493135019298	103.03	0.40285	102.86	102.64	103.04	-0.17034					27	9	4	0	0	0	1.0259	1	12788	12788		21.686	11.98	1	2374500			15312	12975	10854	10874	16623	16623					0.07085945602943866
FANLEATIK	9	Unmodified	_FANLEATIK_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.78155517578125	2	503.782025	1005.5495	-0.40357	-0.00020331	-0.077031	-3.8807E-05	-0.4806	-0.00024212	503.7819410742713	47.526	1.3359	47.526	47.146	48.482	0					135	39	5	0	0	0	0.75397	1	4829	4829		42.396	3.59	1	16725000	+		15313	23025	10855	10875	16624	16624					0.046943405859906306
FANQSTKL	8	Unmodified	_FANQSTKL_					0	0	0		nc|ENSG00000115694|O00506-2|STK25	nc|ENSG00000115694|O00506-2|STK25	nc|ENSG00000115694|O00506-2|STK25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7457580566406	2	454.745442	907.476331	0.28101	0.00012779	-0.10804	-4.9132E-05	0.17297	7.8656E-05	454.7453306472603	54.093	1.0312	54.093	53.726	54.757	0					75	29	4	0	0	0	0.87148	1	5915	5915		53.351	2.016	1	3243200			15314	18191	10856	10876	16625	16625					0.01889211863363016
FAPFLNNSPQ	10	Unmodified	_FAPFLNNSPQ_					0	0	0		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3069458007812	2	567.782556	1133.55056	-0.14785	-8.3944E-05	2.9323	0.0016649	2.7845	0.001581	568.2869198840633	32.949	0.88998	32.718	32.263	33.153	-0.23107					35	21	3	0	0	0	0.03519	1	2258	2258		14.865	0	1	77236			15315	9896	10857	10877	16626	16626					-0.01087445045095592
FAPIWLIA	8	Unmodified	_FAPIWLIA_					0	0	0			REV__ENSG00000177511|ENST00000324000|ST8SIA3	REV__ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.7777099609375	2	465.776014	929.537475	0.065671	3.0588E-05	2.5588	0.0011918	2.6245	0.0012224	465.77702176396326	81.519	3.6939	81.543	79.858	83.552	0.023911					241	88	3	0	0	0	0.9599	1	9949	9949		43.626	10.133	1	1163400	+		15316	27120	10858	10878	16627	16627					0.06988768633459586
FAPLMDHYTP	10	Unmodified	_FAPLMDHYTP_					0	0	0			REV__ENST00000489593.1_1_9:134321978-134323403:+|nuORF	REV__ENST00000489593.1_1_9:134321978-134323403:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.8087158203125	2	596.278792	1190.54303	0.44512	0.00026542	4.0097	0.0023909	4.4548	0.0026563	596.2811184298944	97.655	0.35582	97.531	97.198	97.553	-0.12368					10	7	2	0	0	0	0.03519	1	12088	12088		21.96	0	1	28222	+		15317	33673	10859	10879	16628	16628					-0.04461920637049843
FAPVVPVFILH	11	Unmodified	_FAPVVPVFILH_					0	0	0			REV__ENST00000592782.5_1_17:43185300-43185480:+|nuORF	REV__ENST00000592782.5_1_17:43185300-43185480:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8693237304688	2	619.868434	1237.72232	0.0094929	5.8843E-06	1.6107	0.00099844	1.6202	0.0010043	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	1.0533	1	11875	11875		24.203	2.517	1	4373200	+		15318	35753	10860	10880	16629	16629					0.11296331713219843
FARAAGGDISD	11	Unmodified	_FARAAGGDISD_					0	0	0		ENST00000468778.5_1_2:74649977-74650720:+|nuORF	ENST00000468778.5_1_2:74649977-74650720:+|nuORF	ENST00000468778.5_1_2:74649977-74650720:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.23388671875	2	540.259445	1078.50434	-0.60566	-0.00032722	3.8545	0.0020824	3.2488	0.0017552	540.2613417586715	26.057	0.36605	26.139	25.924	26.29	0.081291					14	8	2	0	0	0	0.024747	1	1261	1261		31.53	0	1	142450			15319	14885	10861	10881	16630	16630					-0.03177509947181534
FARKFNALF	9	Unmodified	_FARKFNALF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3137817382812	2	557.313826	1112.6131	-0.84977	-0.00047359	0.70553	0.0003932	-0.14424	-8.0384E-05	557.3141584542666	55.285	1.0298	55.139	54.837	55.867	-0.14609					55	28	2	0	0	0	0.40179	1	5942	5942		65.803	11.027	1	2791000			15320	456	10862	10882	16631	16631					0.061297458137460126
FARKFNALF	9	Unmodified	_FARKFNALF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3134155273438	2	557.313826	1112.6131	-0.17728	-9.88E-05	-0.00022806	-1.271E-07	-0.17751	-9.8927E-05	557.3136883329108	55.355	0.9019	55.124	54.855	55.757	-0.23087					61	25	3	0	0	0	0.29104	1	5929	5929		76.847	10.417	1	3115100			15321	456	10862	10882	16632	16632					0.061297458137460126
FARKFNALF	9	Unmodified	_FARKFNALF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.3137817382812	2	557.313826	1112.6131	-0.43589	-0.00024293	0.26832	0.00014954	-0.16757	-9.3391E-05	557.3138643833655	55.329	1.0293	55.122	54.831	55.86	-0.20613					67	28	3	0	0	0	0.43973	1	5923	5923		63.306	8.5416	1	2866000			15322	456	10862	10882	16633	16633					0.061297458137460126
FARKFNALF	9	Unmodified	_FARKFNALF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.313826	1112.6131	0.38104	0.00021236	2.9094	0.0016214	3.2904	0.0018338	557.3155264428713	55.115	0.70377	55.115	54.723	55.427	0	0.038468	0.0026356	NaN	76.847	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180530			15323	456	10862	10882							0.061297458137460126
FARKFNALF	9	Unmodified	_FARKFNALF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.313826	1112.6131	-0.41489	-0.00023122	4.0088	0.0022342	3.594	0.002003	557.3161072419026	55.166	0.34207	55.016	54.857	55.199	-0.15036	-0.060212	0.0038611	NaN	76.847	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269710			15324	456	10862	10882							0.061297458137460126
FARKFNALF	9	Unmodified	_FARKFNALF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.313826	1112.6131	-0.11107	-6.19E-05	3.6101	0.0020119	3.499	0.00195	557.3156199686814	54.844	0.48991	54.942	54.626	55.116	0.098015	-0.13461	0.0034166	NaN	76.847	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193310			15325	456	10862	10882							0.061297458137460126
FARKKAKRL	9	Unmodified	_FARKKAKRL_					0	0	0			REV__ENSG00000121058|ENST00000240316|COIL	REV__ENSG00000121058|ENST00000240316|COIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.3342895507812	2	559.369467	1116.72438	0.73443	0.00041082	-2.3849	-0.001334	-1.6505	-0.00092321	559.3683935783181	51.578	0.30302	51.394	51.258	51.561	-0.18404					12	7	2	0	0	0	0.024541	1	5319	5319		31.955	11.473	1	154420	+		15326	22576	10863	10883	16634	16634					0.1706880524168355
FARLKPPDN	9	Unmodified	_FARLKPPDN_					0	0	0		nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5	nc|ENSG00000100784|O75582-3|RPS6KA5	nc|ENSG00000100784|O75582-3|RPS6KA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7899169921875	2	529.293091	1056.57163	0.41226	0.0002182	-2.1771	-0.0011523	-1.7648	-0.0009341	529.2920167873277	104.57	0.83572	104.4	103.94	104.77	-0.16791					35	23	2	0	0	0	0.024344	1	13017	13017		37.812	0	1	503780			15327	2246	10864	10884	16635	16635					0.04560565054430299
FARLWNAKAR	10	Unmodified	_FARLWNAKAR_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.8988037109375	3	411.57188	1231.69381	0.35044	0.00014423	-1.8291	-0.00075281	-1.4787	-0.00060857	411.57102157126485	18.491	0.69365	18.287	17.866	18.559	-0.20371					21	13	2	0	0	0	0.03519	1	292	292		21.686	0.8486	1	43165	+		15328	23116	10865	10885	16636	16636					0.08723026856637262
FARPQPLWLI	10	Unmodified	_FARPQPLWLI_					0	0	0		ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	414.2463073730469	3	414.244881	1239.71281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.954	1	21.023	20.523	21.523	0.068901								0	0	0	0.73822	1	560	560		36.447	1.2685	1				15329	12866	10866	10886	16637	16637					0.10254563427702124
FARRMAHANQL	11	Unmodified	_FARRMAHANQL_					0	0	0			REV__ENSG00000143157|ENST00000367876|POGK	REV__ENSG00000143157|ENST00000367876|POGK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.9007873535156	3	438.899779	1313.67751	0.37095	0.00016281	1.8966	0.00083242	2.2675	0.00099522	438.9005112874841	18.445	0.49235	18.314	18.105	18.597	-0.13148					27	9	4	0	0	0	0.99689	1	280	280		37.508	4.7576	1	180340	+		15330	24205	10867	10887	16638	16638					0.033215776282531806
FARVGLALLAC	11	Unmodified	_FARVGLALLAC_					0	0	0			REV__ENSG00000164615|ENST00000297156|CAMLG	REV__ENSG00000164615|ENST00000297156|CAMLG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3302001953125	2	567.328619	1132.64269	-0.38591	-0.00021894	2.4832	0.0014088	2.0973	0.0011899	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0399	1	11199	11199		27.882	7.8855	1	4298500	+		15331	25778	10868	10888	16639	16639					0.0816694176760393
FARVSSGP	8	Unmodified	_FARVSSGP_					0	0	0			REV__ENST00000540458.5_1_12:6949280-6949580:+|nuORF	REV__ENST00000540458.5_1_12:6949280-6949580:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.7189636230469	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	1.0574	1	12085	12085		19.36	1.995	1	3611200	+		15332	34747	10869	10889	16640	16640					0.00696673520440072
FASDETLFD	9	Unmodified	_FASDETLFD_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7673950195312	2	522.729655	1043.44476	-0.93091	-0.00048661	1.5534	0.000812	0.62247	0.00032538	522.7299779928703	22.381	0.28102	22.381	22.291	22.572	0					8	5	2	0	0	0	0.024506	1	800	800		38.806	8.3025	1	18297	+		15333	26624	10870	10890	16641	16641					-0.07522825681212453
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7432861328125	2	486.742899	971.471246	0.087896	4.2783E-05	-0.22608	-0.00011004	-0.13819	-6.7261E-05	486.742854135527	41.74	1.3905	41.74	41.396	42.786	0					116	39	5	0	0	0	0.034181	2	3776	3776;3794		138.24	20.774	1	14480000			15334	10794	10871	10891	16642;16643	16642					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7432861328125	2	486.742899	971.471246	-0.34527	-0.00016806	0.21512	0.00010471	-0.13015	-6.3348E-05	486.74306435550557	41.944	1.5435	41.812	41.455	42.998	-0.13219					102	43	3	0	0	0	0.013805	4	3783	3783;3795;3807;3821		167.82	61.409	1	14862000			15335	10794	10871	10891	16644;16645;16646;16647	16644					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7431335449219	2	486.742899	971.471246	-0.48656	-0.00023683	0.42485	0.00020679	-0.061702	-3.0033E-05	486.74316626761896	41.883	2.0195	41.906	41.53	43.55	0.023014					138	56	5	0	0	0	0.028181	2	3760	3760;3776		143.02	32.899	1	13978000			15336	10794	10871	10891	16648;16649	16648					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7430114746094	2	486.742899	971.471246	-0.20063	-9.7655E-05	0.35333	0.00017198	0.1527	7.4325E-05	486.74293862454937	41.911	1.5321	41.788	41.385	42.917	-0.12299					91	40	4	0	0	0	0.016838	3	3745	3733;3745;3757		152.63	44.546	1	6011400			15337	10794	10871	10891	16650;16651;16652	16651					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.74273681640625	2	486.742899	971.471246	-0.40786	-0.00019852	0.53854	0.00026213	0.13068	6.3606E-05	486.7430411193238	42.099	1.3369	41.867	41.508	42.845	-0.23186					89	35	4	0	0	0	0.06122	1	3767	3767		124.59	34.224	1	6549500			15338	10794	10871	10891	16653	16653					-0.01563091999230437
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.74285888671875	2	486.742899	971.471246	0.078387	3.8155E-05	-0.026161	-1.2734E-05	0.052227	2.5421E-05	486.7427641829839	42.114	1.4764	41.884	41.508	42.985	-0.2303					91	39	4	0	0	0	0.015769	2	3768	3756;3768		157.99	55.216	1	7205300			15339	10794	10871	10891	16654;16655	16655					-0.01563091999230437
FASIVRRPS	9	Unmodified	_FASIVRRPS_					0	0	0			REV__ENST00000469763.5_1_7:102004840-102006461:+|nuORF	REV__ENST00000469763.5_1_7:102004840-102006461:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.8009643554688	2	516.801083	1031.58761	0.43698	0.00022583	-0.71509	-0.00036956	-0.27811	-0.00014373	516.8005415032402	36.863	1.0149	36.863	36.508	37.523	0					65	26	4	0	0	0	0.72875	1	2955	2955		44.117	4.864	1	2832300	+		15340	33133	10872	10892	16656	16656					0.07308271291321944
FASLLLGVLL	10	Unmodified	_FASLLLGVLL_					0	0	0		nc|ENSG00000240583|P29972-3|AQP1	nc|ENSG00000240583|P29972-3|AQP1	nc|ENSG00000240583|P29972-3|AQP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7716674804688	2	523.336436	1044.65832	0.089264	4.6715E-05	-0.099167	-5.1898E-05	-0.0099036	-5.1829E-06	523.3361011457513	72.825	0.3815	72.56	72.343	72.724	-0.26479					16	8	2	0	0	0	0.03519	1	8531	8531		37.159	16.212	1	92661			15341	18753	10873	10893	16657	16657					0.13777551556290746
FASNNKAVK	9	Unmodified	_FASNNKAVK_					0	0	0			REV__ENST00000560170.1_1_15:96828545-96870526:-|nuORF;REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF	REV__ENST00000560170.1_1_15:96828545-96870526:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7720947265625	2	489.771991	977.529429	-0.10626	-5.2044E-05	-0.52528	-0.00025727	-0.63154	-0.00030931	489.7718697157063	42.781	0.95881	42.807	42.152	43.111	0.026012					82	26	4	0	0	0	0.50848	2	3888	3888;3899		58.782	1.5259	1	11732000	+		15342	33918;35171	10874	10894	16658;16659	16658					0.039765896460380645
FASPCPLPDQ	10	Unmodified	_FASPCPLPDQ_					0	0	0			REV__ENST00000606915.1_1_6:150240342-150240588:+|nuORF	REV__ENST00000606915.1_1_6:150240342-150240588:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7493896484375	2	537.749867	1073.48518	-0.36915	-0.00019851	0.16656	8.9566E-05	-0.2026	-0.00010895	537.7498307106357	76.111	0.90054	76.123	75.752	76.653	0.011642					59	22	3	0	0	0	0.83673	1	9289	9289		58.23	1.5089	1	1376400	+		15343	35938	10875	10895	16660	16660					-0.04862182562465023
FASPSARFAG	10	Unmodified	_FASPSARFAG_					0	0	0			REV__AP5B1|p.C829Lfs*32|1|0.48|ENSG00000254470|chr11:65778008-65778009|-/G|frameshift_variant	REV__AP5B1|p.C829Lfs*32|1|0.48|ENSG00000254470|chr11:65778008-65778009|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.75823974609375	2	505.756341	1009.49813	-0.40181	-0.00020322	2.144	0.0010843	1.7422	0.00088112	505.75711645790767	60.194	1.2975	59.994	59.209	60.507	-0.20016					53	34	2	0	0	0	0.03519	1	6842	6842		60.972	33.09	1	323920	+		15344	19152	10876	10896	16661	16661					-0.006239833880499646
FATLTAVFAL	10	Unmodified	_FATLTAVFAL_					0	0	0			REV__ENST00000531029.5_1_11:64880120-64882285:+|nuORF	REV__ENST00000531029.5_1_11:64880120-64882285:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.30419921875	2	527.302593	1052.59063	0.11826	6.2359E-05	4.3982	0.0023192	4.5165	0.0023816	527.3049169576591	97.891	1.1971	97.902	97.283	98.48	0.010231					72	27	5	0	0	0	1.0271	1	12480	12480		42.396	1.618	1	628790	+		15345	24703	10877	10897	16662	16662					0.06644101625465737
FATLTAVFAL	10	Unmodified	_FATLTAVFAL_					0	0	0			REV__ENST00000531029.5_1_11:64880120-64882285:+|nuORF	REV__ENST00000531029.5_1_11:64880120-64882285:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.302490234375	2	527.302593	1052.59063	0.8738	0.00046076	3.7155	0.0019592	4.5893	0.00242	527.304563058713	97.996	1.4903	97.994	97.367	98.857	-0.0020752					65	34	3	0	0	0	0.941	1	12463	12463		51.335	10.557	1	667590	+		15346	24703	10877	10897	16663	16663					0.06644101625465737
FATNNKFI	8	Unmodified	_FATNNKFI_					0	0	0			REV__HCFC2|p.L610F|1|0.41|ENSG00000111727|chr12:104098432-104098432|G/T|missense_variant	REV__HCFC2|p.L610F|1|0.41|ENSG00000111727|chr12:104098432-104098432|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.75653076171875	2	477.75581	953.497067	-0.058743	-2.8065E-05	0.97499	0.00046581	0.91625	0.00043774	477.7558792993769	58.081	0.83762	58.172	57.908	58.745	0.091217					49	22	3	0	0	0	0.56067	1	6504	6504		79.939	8.5613	1	2275600	+		15347	36093	10878	10898	16664	16664					0.018458022430536403
FAVAIPRTPD	10	Unmodified	_FAVAIPRTPD_					0	0	0			REV__ENST00000371162.4_1_2:111996244-111996538:-|nuORF	REV__ENST00000371162.4_1_2:111996244-111996538:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8023681640625	2	543.800749	1085.58694	-0.84096	-0.00045731	3.4607	0.0018819	2.6197	0.0014246	543.8024217066045	56.828	1.1808	56.828	56.351	57.532	0					87	32	4	0	0	0	0.74632	1	6362	6362		64.207	7.4862	1	10205000	+		15348	31152	10879	10899	16665	16665					0.04757431851612637
FAVEDVNLV	9	Unmodified	_FAVEDVNLV_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.2675476074219	2	503.266207	1004.51786	0.81658	0.00041096	2.7836	0.0014009	3.6002	0.0018118	503.26735804936493	71.17	0.81647	70.881	70.297	71.113	-0.28858					36	19	2	0	0	0	0.29158	1	8571	8571		76.774	4.8967	1	1374500			15349	1091	10880	10900	16666	16666					0.015783478320372524
FAVFGLQVY	9	Unmodified	_FAVFGLQVY_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7976684570312	2	522.28166	1042.54877	-0.81593	-0.00042615	-3.2345	-0.0016893	-4.0504	-0.0021155	522.279706559693	56.631	0.40003	56.467	56.275	56.675	-0.16432					12	10	2	0	0	0	0.024517	1	6304	6304		19.36	0	1	152610			15350	1245	10881	10901	16667	16667					0.02919545936947543
FAVIKKIDN	9	Unmodified	_FAVIKKIDN_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3243408203125	2	524.313492	1046.61243	0.26165	0.00013718	0.974	0.00051068	1.2356	0.00064787	524.3139283360572	78.899	0.75519	78.667	78.476	79.232	-0.23141					21	17	2	0	0	0	0.024517	1	9503	9503		26.796	2.5934	1	68699	+		15351	28475	10882	10902	16668	16668					0.09098906374038052
FAVKKLTH	8	Unmodified	_FAVKKLTH_					0	0	0			REV__CTU2|p.E314K|1|0.29|ENSG00000174177|chr16:88713713-88713713|G/A|missense_variant	REV__CTU2|p.E314K|1|0.29|ENSG00000174177|chr16:88713713-88713713|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3290710449219	2	472.28982	942.565087	-0.48639	-0.00022972	-3.7318	-0.0017625	-4.2182	-0.0019922	472.2879098285007	22.401	0.5548	22.216	21.952	22.507	-0.18539					23	11	3	0	0	0	0.027866	1	804	804		24.203	10.066	1	193060	+		15352	19630	10883	10903	16669	16669					0.09150671893701201
FAVLLTQLI	9	Unmodified	_FAVLLTQLI_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.820556640625	2	509.320786	1016.62702	0.47499	0.00024192	-0.66975	-0.00034112	-0.19476	-9.9197E-05	509.32028054093547	107.15	0.52032	106.99	106.76	107.28	-0.15771					28	19	2	0	0	0	0.75397	1	13289	13289		42.396	3.59	1	80492			15353	1322	10884	10904	16670	16670					0.11936978522192021
FAVLTGLVEV	10	Unmodified	_FAVLTGLVEV_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA-SH3D19|1|fusion;LRBA-SH3D19|4|fusion;LRBA-SH3D19|2|fusion;LRBA-SH3D19|3|fusion;ENST00000514435.1_1_4:151935569-151935794:-|nuORF	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;ENST00000514435.1_1_4:151935569-151935794:-|nuORF	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.8157958984375	2	524.307875	1046.6012	-0.13565	-7.1121E-05	-0.90986	-0.00047705	-1.0455	-0.00054817	524.3073325725674	74.946	0.68079	74.956	74.607	75.288	0.010376					49	16	4	0	0	0	0.03519	1	9062	9062		25.574	3.6142	1	2608600			15354	10155;15880	10885	10905	16671	16671					0.07976084279880524
FAVSVDEVTI	10	Unmodified	_FAVSVDEVTI_					0	0	0			REV__ENSG00000122180|ENST00000241651|MYOG	REV__ENSG00000122180|ENST00000241651|MYOG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2841186523438	2	540.284597	1078.55464	-0.32206	-0.00017401	0.64917	0.00035073	0.3271	0.00017673	540.284830760412	89.116	0.83817	89.116	88.767	89.605	0					46	19	3	0	0	0	0.85955	1	11243	11243		56.721	1.9987	1	1374900	+		15355	22630	10886	10906	16672	16672					0.01850599657973362
FAVSVDEVTI	10	Unmodified	_FAVSVDEVTI_					0	0	0			REV__ENSG00000122180|ENST00000241651|MYOG	REV__ENSG00000122180|ENST00000241651|MYOG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2843627929688	2	540.284597	1078.55464	-0.0069122	-3.7346E-06	0.30785	0.00016632	0.30093	0.00016259	540.2845894536703	89.077	1.0941	89.055	88.78	89.874	-0.021645					59	25	4	0	0	0	0.42446	1	11208	11208		96.19	5.4138	1	1389500	+		15356	22630	10886	10906	16673	16673					0.01850599657973362
FAVSVDEVTI	10	Unmodified	_FAVSVDEVTI_					0	0	0			REV__ENSG00000122180|ENST00000241651|MYOG	REV__ENSG00000122180|ENST00000241651|MYOG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2835083007812	2	540.284597	1078.55464	-0.41396	-0.00022366	0.5323	0.0002876	0.11834	6.3939E-05	540.2847832250313	89.163	1.2041	89.179	88.88	90.084	0.015907					59	28	3	0	0	0	0.52982	1	11186	11186		84.916	13.538	1	1477800	+		15357	22630	10886	10906	16674	16674					0.01850599657973362
FAVSVDEVTI	10	Unmodified	_FAVSVDEVTI_					0	0	0			REV__ENSG00000122180|ENST00000241651|MYOG	REV__ENSG00000122180|ENST00000241651|MYOG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.284597	1078.55464	-0.91471	-0.0004942	2.4919	0.0013463	1.5772	0.00085212	540.7870523278269	89.186	0.53467	89.023	88.765	89.3	-0.1626	-0.048677	0.0020263	NaN	96.19	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68805	+		15358	22630	10886	10906							0.01850599657973362
FAVSVDEVTI	10	Unmodified	_FAVSVDEVTI_					0	0	0			REV__ENSG00000122180|ENST00000241651|MYOG	REV__ENSG00000122180|ENST00000241651|MYOG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.284597	1078.55464	-0.46031	-0.0002487	1.5904	0.00085929	1.1301	0.00061059	540.2852770173623	89.111	0.4558	88.983	88.829	89.285	-0.12774	-0.088984	0.0010522	NaN	96.19	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78517	+		15359	22630	10886	10906							0.01850599657973362
FAVSVDEVTI	10	Unmodified	_FAVSVDEVTI_					0	0	0			REV__ENSG00000122180|ENST00000241651|MYOG	REV__ENSG00000122180|ENST00000241651|MYOG	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.284597	1078.55464	-0.75475	-0.00040778	1.6455	0.00088901	0.8907	0.00048123	540.2854019154573	89.213	0.53938	89.075	88.819	89.359	-0.13762	0.0030445	0.0011117	NaN	96.19	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115850	+		15360	22630	10886	10906							0.01850599657973362
FAWTRGLEHR	10	Unmodified	_FAWTRGLEHR_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2	nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.8899230957031	3	424.891389	1271.65234	-0.5317	-0.00022591	-2.7092	-0.0011511	-3.2409	-0.001377	424.89036779207765	20.463	2.26	20.358	19.981	22.241	-0.10477					140	46	6	0	0	0	1.0997	1	561	561		32.751	1.6824	1	3744000			15361	9096	10887	10907	16675	16675					0.02737846097329566
FAYALLLLL	9	Unmodified	_FAYALLLLL_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.7905883789062	2	518.825704	1035.63685	-0.092981	-4.8241E-05	-3.2274	-0.0016745	-3.3204	-0.0017227	518.8239369808892	80.573	0.72532	80.335	80.082	80.808	-0.23784					32	17	2	0	0	0	0.024475	1	9627	9627		21.702	0	1	777660	+		15362	20528	10888	10908	16676	16676					0.12046166527579771
FAYTWLYI	8	Unmodified	_FAYTWLYI_					0	0	0		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8209228515625	2	538.776211	1075.53787	-1.7498	-0.00094277	-2.0017	-0.0010785	-3.7515	-0.0020212	538.7748480425898	65.206	0.48354	64.94	64.719	65.202	-0.26582					20	12	2	0	0	0	0.027866	1	7639	7639		28.254	0	1	170100			15363	18576	10889	10909	16677	16677					0.0031214356263262744
FCADCGAPQPD	11	Unmodified	_FCADCGAPQPD_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.268798828125	2	562.212792	1122.41103	-0.027879	-1.5674E-05	-2.0318	-0.0011423	-2.0597	-0.001158	562.2118674039151	79.658	0.20709	79.508	79.363	79.57	-0.15051					11	4	3	0	0	0	0.024736	1	9528	9528		44.377	18.803	1	151870			15364	9566	10890	10910	16678	16678					-0.1452789371628569
FCARRAGPG	9	Unmodified	_FCARRAGPG_					0	0	0			REV__ENST00000488751.1_1_7:99156525-99158253:+|nuORF	REV__ENST00000488751.1_1_7:99156525-99158253:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.738525390625	2	467.737428	933.460304	-0.1683	-7.872E-05	3.0915	0.001446	2.9232	0.0013673	467.7387765315901	23.558	0.71148	23.378	23.201	23.913	-0.17989					43	16	3	0	0	0	0.90698	1	960	960		31.955	2.8053	1	1705200	+		15365	33655	10891	10911	16679	16679					-0.009087728545068785
FCCQQQNEL	9	Unmodified	_FCCQQQNEL_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.728759765625	2	556.728609	1111.44266	-0.19722	-0.0001098	0.2666	0.00014843	0.069384	3.8628E-05	556.7287693875779	57.752	1.5473	57.577	57.149	58.697	-0.1749					75	41	2	0	0	0	0.43973	1	6454	6454		63.306	2.3343	1	24636000	+		15366	27592	10892	10912	16680	16680					-0.10859900962327629
FCDCDDRDCD	10	Unmodified	_FCDCDDRDCD_					0	0	0		nc|ENSG00000198542|O95965-2|ITGBL1;nc|ENSG00000198542|O95965-3|ITGBL1;ENSG00000198542|ENST00000376180|ITGBL1	nc|ENSG00000198542|O95965-2|ITGBL1	nc|ENSG00000198542|O95965-2|ITGBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8114318847656	3	402.788063	1205.34236	0.45178	0.00018197	2.0046	0.00080741	2.4563	0.00098938	402.78909224226226	28.701	0.21757	28.532	28.424	28.641	-0.16897					5	4	2	0	0	0	0.03519	1	1689	1689		26.063	18.029	1	26958			15367	10145	10893	10913	16681	16681					-0.252099260783325
FCDKSHIVT	9	Unmodified	_FCDKSHIVT_					0	0	0			REV__ENSG00000053108|ENST00000265342|FSTL4	REV__ENSG00000053108|ENST00000265342|FSTL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.810546875	2	525.257859	1048.50117	-0.66528	-0.00034944	-0.58906	-0.00030941	-1.2543	-0.00065885	525.2575926211064	56.275	0.41782	56.059	55.78	56.198	-0.21551					16	10	2	0	0	0	0.024354	1	6034	6034		38.806	9.6566	1	199150	+		15368	20177	10894	10914	16682	16682					-0.021144763255506405
FCDRPKKKCL	10	Unmodified	_FCDRPKKKCL_					0	0	0			REV__ENST00000396981.6_1_17:4186133-4186166:-|nuORF	REV__ENST00000396981.6_1_17:4186133-4186166:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.20733642578125	3	413.222983	1236.64712	-0.53803	-0.00022233	1.0953	0.00045262	0.5573	0.00023029	413.223869396691	22.209	0.42258	22.024	21.858	22.281	-0.18539					18	8	3	0	0	0	0.03519	1	787	787		26.063	7.5323	1	31444	+		15369	31757	10895	10915	16683	16683					0.03826082918840257
FCDRPKKKCL	10	Unmodified	_FCDRPKKKCL_					0	0	0			REV__ENST00000396981.6_1_17:4186133-4186166:-|nuORF	REV__ENST00000396981.6_1_17:4186133-4186166:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	413.222983	1236.64712	-0.0059044	-2.4398E-06	3.9422	0.001629	3.9363	0.0016266	413.2251141995335	22.214	0.57683	22.012	21.663	22.24	-0.20199	-0.0057694	0.0019292	NaN	26.063	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26038	+		15370	31757	10895	10915							0.03826082918840257
FCEEDSSPAR	10	Unmodified	_FCEEDSSPAR_					0	0	0			REV__nc|ENSG00000160360|Q86YR5-4|GPSM1	REV__nc|ENSG00000160360|Q86YR5-4|GPSM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.2725219726562	2	570.734945	1139.45534	0.096826	5.5262E-05	-1.797	-0.0010256	-1.7002	-0.00097038	570.7337146042722	49.527	0.4141	49.426	49.226	49.64	-0.1008					16	10	2	0	0	0	0.03519	1	4988	4988		32.812	0	1	157050	+		15371	25316	10896	10916	16684	16684					-0.1088116629846354
FCEFATGFLEY	11	Unmodified	_FCEFATGFLEY_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;ENSG00000137573|ENST00000402687|SULF1;ENST00000530674.1_1_8:70550702-70570767:+|nuORF;ENST00000433632.1_1_20:46290355-46292296:-|nuORF;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.4973449707031	3	442.861885	1325.56383	-0.14701	-6.5106E-05	-2.3021	-0.0010195	-2.4491	-0.0010846	442.86032309878937	28.824	1.0087	28.674	28.245	29.254	-0.14952					28	23	2	0	0	0	0.024735	1	1734	1734		46.457	29.927	1	87669			15372	9892	10897	10917	16685	16685					-0.08593375048008056
FCEFATGFLEY	11	Unmodified	_FCEFATGFLEY_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;ENSG00000137573|ENST00000402687|SULF1;ENST00000530674.1_1_8:70550702-70570767:+|nuORF;ENST00000433632.1_1_20:46290355-46292296:-|nuORF;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	442.861885	1325.56383	-1.4882	-0.00065905	0.72259	0.00032001	-0.76558	-0.00033905	443.1973456258042	29.002	0.69212	28.756	28.363	29.055	-0.24524	0.094182	0.0022513	NaN	53.089	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91813			15373	9892	10897	10917							-0.08593375048008056
FCFAHHRSL	9	Unmodified	_FCFAHHRSL_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.303955078125	2	559.271635	1116.52872	-0.11748	-6.5705E-05	3.6705	0.0020528	3.553	0.0019871	559.7765771808042	46.386	0.20016	46.437	46.274	46.474	0.051395					6	5	2	0	0	0	0.024381	1	4513	4513		37.159	0	1	82943	+		15374	25148	10898	10918	16686	16686					-0.024885282746481607
FCGGWWAGRVK	11	Unmodified	_FCGGWWAGRVK_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|69|1|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|69|1|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|69|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2582702636719	3	422.878204	1265.61278	-0.79368	-0.00033563	2.0102	0.00085007	1.2165	0.00051444	422.8799435772132	27.096	0.83448	27.177	26.629	27.463	0.081291					28	21	2	0	0	0	0.024724	1	1406	1406		9.2118	6.0005	1	366260			15375	17835	10899	10919	16687	16687					-0.0093999717778388
FCGIEKGEMW	10	Unmodified	_FCGIEKGEMW_					0	0	0		SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|15|2|sense	SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|15|2|sense	SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|15|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	599.783447265625	2	600.264827	1198.5151	-0.24678	-0.00014813	3.2716	0.0019638	3.0248	0.0018157	600.7688627789257	82.772	0.26105	82.591	82.418	82.679	-0.18079					10	5	2	0	0	0	0.03519	1	9991	9991		39.253	11.171	1	32234			15376	37980	10900	10920	16688	16688					-0.07621566888769848
FCGLLIAKS	9	Unmodified	_FCGLLIAKS_					0	0	0		NCR2|p.V202I|1|0.27|ENSG00000096264|chr6:41342109-41342109|G/A|missense_variant	NCR2|p.V202I|1|0.27|ENSG00000096264|chr6:41342109-41342109|G/A|missense_variant	NCR2|p.V202I|1|0.27|ENSG00000096264|chr6:41342109-41342109|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2540283203125	2	476.270238	950.525924	0.0032317	1.5391E-06	-2.2121	-0.0010536	-2.2089	-0.001052	476.2704822623964	26.947	0.48766	26.934	26.579	27.067	-0.012983					15	11	2	0	0	0	0.024263	1	1390	1390		71.296	27.179	1	81084			15377	18865	10901	10921	16689	16689					0.048682035478236685
FCGPKSSIL	9	Unmodified	_FCGPKSSIL_					0	0	0			REV__ENSG00000084754|ENST00000380649|HADHA	REV__ENSG00000084754|ENST00000380649|HADHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.2540283203125	2	476.252046	950.489538	0.0072139	3.4356E-06	3.673	0.0017493	3.6802	0.0017527	476.25381609627397	27.03	2.3706	27.017	26.496	28.867	-0.012983					139	59	5	0	0	0	0.22754	1	1390	1390		85.359	8.5853	1	17484000	+		15378	20742	10902	10922	16690	16690					0.012313266511227994
FCHLTVLLAG	10	Unmodified	_FCHLTVLLAG_					0	0	0		ENSG00000006210|ENST00000006053|CX3CL1	ENSG00000006210|ENST00000006053|CX3CL1	ENSG00000006210|ENST00000006053|CX3CL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2804565429688	2	537.294245	1072.57394	-0.35455	-0.0001905	1.649	0.00088597	1.2944	0.00069548	537.2950872917446	42.421	0.3743	42.298	42.116	42.49	-0.12299					16	9	2	0	0	0	0.03519	1	3816	3816		60.972	8.0352	1	236180			15379	787	10903	10923	16691	16691					0.04055277467864471
FCILLLYAQ	9	Unmodified	_FCILLLYAQ_					0	0	0		ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7537231445312	2	542.298996	1082.58344	-1.0039	-0.00054442	4.4296	0.0024022	3.4257	0.0018577	542.3027581166909	38.359	0.69431	38.138	37.959	38.653	-0.22149					25	18	2	0	0	0	0.024535	1	3196	3196		25.45	1.2474	1	264120			15380	10413	10904	10924	16692	16692					0.045450457533888766
FCLEAPRGR	9	Unmodified	_FCLEAPRGR_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2359008789062	2	524.771468	1047.52838	-0.84618	-0.00044405	0.91722	0.00048133	0.071035	3.7277E-05	525.2736988359445	25.899	0.41773	25.663	25.425	25.843	-0.23603					15	9	2	0	0	0	0.024506	1	1256	1256		38.806	12.01	1	106390	+		15381	24020	10905	10925	16693	16693					0.006520520054891676
FCLFFTKMVI	10	Unmodified	_FCLFFTKMVI_					0	0	0		ENST00000375119.7_1_9:100675808-100678452:-|nuORF	ENST00000375119.7_1_9:100675808-100678452:-|nuORF	ENST00000375119.7_1_9:100675808-100678452:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.8269653320312	2	624.829606	1247.64466	0.010632	6.6433E-06	-3.9355	-0.002459	-3.9249	-0.0024524	624.82703262961	61.322	0.96591	61.116	60.543	61.509	-0.20599					61	23	4	0	0	0	0.62431	1	6855	6855		74.255	5.4694	1	1605500			15382	13148	10906	10926	16694	16694					0.030742344611553563
FCLKRGMKV	9	Unmodified	_FCLKRGMKV_					0	0	0		ZNF425|p.R340C|1|0.17|ENSG00000204947|chr7:149104853-149104853|G/A|missense_variant	ZNF425|p.R340C|1|0.17|ENSG00000204947|chr7:149104853-149104853|G/A|missense_variant	ZNF425|p.R340C|1|0.17|ENSG00000204947|chr7:149104853-149104853|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.303955078125	2	541.30409	1080.59363	-0.14343	-7.764E-05	-1.5977	-0.00086484	-1.7411	-0.00094248	541.3031407680302	47.263	1.1151	47.11	46.776	47.891	-0.15301					98	31	5	0	0	0	0.70186	1	4712	4712		45.952	6.6991	1	10586000			15383	38191	10907	10927	16695	16695					0.056553302069914935
FCLLRIASF	9	Unmodified	_FCLLRIASF_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|160|3|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|160|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2608032226562	2	535.296788	1068.57902	-0.17434	-9.3325E-05	3.5495	0.0019001	3.3752	0.0018067	535.2984611877204	24.098	0.53249	23.883	23.644	24.177	-0.2151					33	11	4	0	0	0	0.024487	1	1054	1054		40.573	20.091	1	572150	+		15384	37690	10908	10928	16696	16696					0.047475813304799885
FCLQGLSLPHL	11	Unmodified	_FCLQGLSLPHL_					0	0	0			REV__ENST00000589225.5_1_17:76792526-76792832:-|nuORF	REV__ENST00000589225.5_1_17:76792526-76792832:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.8913879394531	3	409.889998	1226.64816	-0.87563	-0.00035891	3.2726	0.0013414	2.397	0.00098251	409.8915383013813	28.471	1.2467	28.225	27.677	28.924	-0.24524					65	29	3	0	0	0	0.98542	1	1675	1675		40.058	6.1365	1	2573700	+		15385	35673	10909	10929	16697	16697					0.043906205593884806
FCLVLLFLW	9	Unmodified	_FCLVLLFLW_					0	0	0		ENSG00000169783|ENST00000355300|LINGO1;nc|ENSG00000169783|Q96FE5-2|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.777587890625	2	577.327556	1152.64056	0.026948	1.5558E-05	-1.6775	-0.00096844	-1.6505	-0.00095288	577.3266326880438	46.584	0.42294	46.487	46.331	46.754	-0.096649					16	11	2	0	0	0	0.024475	1	4481	4481		29.842	12.477	1	240220			15386	7976	10910	10930	16698	16698					0.07034513029748268
FCMTFLVENEQ	11	Unmodified	_FCMTFLVENEQ_					0	0	0			REV__nc|ENSG00000162711|Q96P20-3|NLRP3	REV__nc|ENSG00000162711|Q96P20-3|NLRP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.22479248046875	3	454.201913	1359.58391	-0.18926	-8.5964E-05	-0.83962	-0.00038136	-1.0289	-0.00046732	454.2019072996729	38.617	0.45719	38.396	38.148	38.605	-0.22022					17	11	2	0	0	0	0.024759	1	3173	3173		23.378	17.965	1	104370	+		15387	25478	10911	10931	16699	16699					-0.08149947379706646
FCNMPPLL	8	Unmodified	_FCNMPPLL_					0	0	0		ENSG00000181698|ENST00000641665|OR5T1	ENSG00000181698|ENST00000641665|OR5T1	ENSG00000181698|ENST00000641665|OR5T1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30633544921875	2	467.729892	933.445231	-0.43544	-0.00020367	3.6804	0.0017214	3.2449	0.0015177	467.7314338124634	61.936	0.8252	61.936	61.255	62.08	0					31	21	2	0	0	0	0.027866	1	7167	7167		20.482	0	1	176640			15388	9061	10912	10932	16700	16700					-0.024154007667334554
FCQIWKRREDR	11	Unmodified	_FCQIWKRREDR_					0	0	0			REV__nc|ENSG00000087460|Q5JWF2-2|GNAS;REV__nc|ENSG00000141404|P38405-3|GNAL	REV__nc|ENSG00000141404|P38405-3|GNAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2584228515625	3	512.93326	1535.77795	-0.35587	-0.00018254	-2.3726	-0.001217	-2.7285	-0.0013995	512.9314114429485	37.911	0.42518	37.731	37.483	37.908	-0.17929					20	11	2	0	0	0	0.024882	1	3098	3098		12.433	3.6335	1	252660	+		15389	36491;24080	10913	10933	16701	16701					0.031491898912008764
FCRNSCNYFLF	11	Unmodified	_FCRNSCNYFLF_					0	0	0			REV__ENST00000569674.1_1_1:108743384-108743465:-|nuORF	REV__ENST00000569674.1_1_1:108743384-108743465:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2926330566406	3	471.874131	1412.60056	0.42483	0.00020047	3.7834	0.0017853	4.2082	0.0019858	471.87587943440235	50.197	0.47777	50.046	49.745	50.223	-0.1512					19	13	2	0	0	0	0.02477	1	5239	5239		35.178	22.221	1	92281	+		15390	35374	10914	10934	16702	16702					-0.0892340170312309
FCRNSCNYFLF	11	Unmodified	_FCRNSCNYFLF_					0	0	0			REV__ENST00000569674.1_1_1:108743384-108743465:-|nuORF	REV__ENST00000569674.1_1_1:108743384-108743465:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	471.874131	1412.60056	0.29172	0.00013765	3.7319	0.001761	4.0236	0.0018986	471.87574524587575	49.874	0.25215	49.874	49.768	50.02	0	-0.063562	-0.00045573	NaN	35.178	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97031	+		15391	35374	10914	10934							-0.0892340170312309
FCRNSCNYFLF	11	Unmodified	_FCRNSCNYFLF_					0	0	0			REV__ENST00000569674.1_1_1:108743384-108743465:-|nuORF	REV__ENST00000569674.1_1_1:108743384-108743465:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	471.874131	1412.60056	-0.0051283	-2.4199E-06	4.4143	0.002083	4.4091	0.0020806	471.87618555572726	49.82	0.31652	49.894	49.731	50.047	0.074196	-0.044142	0.00051025	NaN	35.178	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99563	+		15392	35374	10914	10934							-0.0892340170312309
FCRPKENWWQ	10	Unmodified	_FCRPKENWWQ_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.3031311035156	3	465.220518	1392.63972	-0.61053	-0.00028403	1.7538	0.00081589	1.1432	0.00053186	465.22129355892315	35.399	0.4659	35.212	34.873	35.339	-0.18675					17	11	2	0	0	0	0.03519	1	2620	2620		41.427	17.904	1	158870			15393	7348	10915	10935	16703	16703					-0.04088933357229507
FCSAGFLQNQ	10	Unmodified	_FCSAGFLQNQ_					0	0	0			REV__ENST00000366783.7_1_1:227083353-227083530:+|nuORF	REV__ENST00000366783.7_1_1:227083353-227083530:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.3226318359375	2	557.752941	1113.49133	-1.3096	-0.00073045	3.1792	0.0017732	1.8696	0.0010428	557.7547608310506	29.104	0.5648	28.859	28.578	29.142	-0.24524					30	12	3	0	0	0	0.03519	1	1759	1759		64.207	14.766	1	484930	+		15394	30987	10916	10936	16704	16704					-0.06087664330948428
FCSAGFLQNQ	10	Unmodified	_FCSAGFLQNQ_					0	0	0			REV__ENST00000366783.7_1_1:227083353-227083530:+|nuORF	REV__ENST00000366783.7_1_1:227083353-227083530:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3221435546875	2	557.752941	1113.49133	-0.44997	-0.00025097	1.4053	0.0007838	0.95531	0.00053283	557.7540894033604	28.89	0.51868	28.721	28.51	29.029	-0.16897					28	11	3	0	0	0	0.03519	1	1734	1734		60.972	4.2509	1	164400	+		15395	30987	10916	10936	16705	16705					-0.06087664330948428
FCSSLLGLSP	10	Unmodified	_FCSSLLGLSP_					0	0	0			REV__ENST00000425974.5_1_2:13142632-13142728:-|nuORF	REV__ENST00000425974.5_1_2:13142632-13142728:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7843933105469	2	512.26261	1022.51067	0.4517	0.00023139	-0.8296	-0.00042497	-0.3779	-0.00019358	512.2617066220048	58.924	0.50241	58.924	58.679	59.182	0					27	13	3	0	0	0	0.03519	1	6746	6746		51.335	23.081	1	521560	+		15396	32265	10917	10937	16706	16706					0.0003129195997644274
FCTSPELVL	9	Unmodified	_FCTSPELVL_					0	0	0			REV__ENST00000469550.6_1_5:141000686-141000896:-|nuORF	REV__ENST00000469550.6_1_5:141000686-141000896:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7719421386719	2	504.757161	1007.49977	-0.48493	-0.00024477	0.54577	0.00027548	0.060838	3.0709E-05	505.25845709728003	49.035	0.14385	48.882	48.756	48.9	-0.15277					6	3	2	0	0	0	0.024412	1	5003	5003		40.573	11.423	1	54288	+		15397	33131	10918	10938	16707	16707					-0.0036811041431974445
FCVHVNHSPF	10	Carbamidomethyl (C)	_FC(Carbamidomethyl (C))VHVNHSPF_	FC(1)VHVNHSPF		FC(50)VHVNHSPF		0	1	0		nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.19512939453125	3	415.19408	1242.56041	-0.21286	-8.838E-05	3.4203	0.0014201	3.2075	0.0013317	415.19541319844507	42.026	1.2372	41.903	41.527	42.765	-0.12299					68	32	3	0	0	0	0.96822	1	3763	3763		49.536	16.786	1	3109600			15398	18157	10919	10939	16708	16708	238				-0.05116580311391772
FCVILLILI	9	Unmodified	_FCVILLILI_					0	0	0			REV__nc|ENSG00000091129|Q92823-3|NRCAM	REV__nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.6167602539062	2	523.837757	1045.66096	-0.021024	-1.1013E-05	-0.23062	-0.0001208	-0.25164	-0.00013182	523.837559450455	17.962	0.34815	17.755	17.564	17.912	-0.20669					10	6	2	0	0	0	0.024541	1	222	222		21.702	0	1	53421	+		15399	20900	10920	10940	16709	16709					0.13995683689586258
FCVILLILI	9	Unmodified	_FCVILLILI_					0	0	0			REV__nc|ENSG00000091129|Q92823-3|NRCAM	REV__nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.837757	1045.66096	0.82623	0.00043281	-1.0375	-0.00054349	-0.21128	-0.00011068	523.837101281106	17.94	0.34834	17.786	17.607	17.955	-0.15421	0.020618	0.00022508	NaN	29.842	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52784	+		15400	20900	10920	10940							0.13995683689586258
FCVQLKKM	8	Unmodified	_FCVQLKKM_					0	0	0		nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF	nc|ENSG00000138658|Q86YA3-6|ZGRF1	nc|ENSG00000138658|Q86YA3-6|ZGRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7706604003906	2	498.772091	995.529629	0.041478	2.0688E-05	-2.041	-0.001018	-1.9995	-0.0009973	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	1.0239	1	13188	13188		33.516	0.70317	1	3882100			15401	15886	10921	10941	16710	16710					0.03168550050042995
FDALIGLLL	9	Unmodified	_FDALIGLLL_					0	0	0			REV__ENSG00000165449|ENST00000395348|SLC16A9	REV__ENSG00000165449|ENST00000395348|SLC16A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.77960205078125	2	487.799686	973.584819	0.3943	0.00019234	-4.3656	-0.0021296	-3.9713	-0.0019372	487.797160874035	75.638	0.42799	75.463	75.194	75.622	-0.17548					17	10	2	0	0	0	0.02309	1	8920	8920		57.811	0	1	112430	+		15402	25886	10922	10942	16711	16711					0.09697003113808478
FDALLVLAW	9	Unmodified	_FDALLVLAW_					0	0	0			REV__nc|ENSG00000204178|Q8N5G2-3|MACO1	REV__nc|ENSG00000204178|Q8N5G2-3|MACO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.76123046875	2	524.29731	1046.58007	-0.19491	-0.00010219	-0.83832	-0.00043953	-1.0332	-0.00054172	524.2935829279527	60.136	0.65588	59.887	59.686	60.342	-0.24842					37	16	4	0	0	0	0.024535	1	6655	6655		25.45	7.1258	1	347040	+		15403	28572	10923	10943	16712	16712					0.05864118971044263
FDAVDAGNDVF	11	Unmodified	_FDAVDAGNDVF_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2694091796875	2	585.259111	1168.50367	-0.27571	-0.00016136	-1.4994	-0.00087756	-1.7751	-0.0010389	585.2580811645156	77.735	1.0211	77.473	77.184	78.205	-0.26202					62	23	4	0	0	0	0.024643	1	9254	9254		85.161	47.349	1	1246700	+		15404	20443	10924	10944	16713	16713					-0.07384349386916256
FDAVDAGNDVF	11	Unmodified	_FDAVDAGNDVF_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.2694702148438	2	585.259111	1168.50367	0.060206	3.5236E-05	-1.7296	-0.0010123	-1.6694	-0.00097703	585.2579502809333	77.737	0.89012	77.495	77.19	78.081	-0.24232					58	20	4	0	0	0	0.024205	1	9256	9256		85.161	35.136	1	1215300	+		15405	20443	10924	10944	16714	16714					-0.07384349386916256
FDAVDAGNDVF	11	Unmodified	_FDAVDAGNDVF_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.269287109375	2	585.259111	1168.50367	-0.77664	-0.00045453	-1.1539	-0.00067535	-1.9306	-0.0011299	585.2583066190335	77.619	0.93949	77.457	77.14	78.079	-0.16196					58	21	4	0	0	0	0.024812	1	9230	9230		77.318	29.402	1	1538100	+		15406	20443	10924	10944	16715	16715					-0.07384349386916256
FDAVQVQSP	9	Unmodified	_FDAVQVQSP_					0	0	0			REV__nc|ENSG00000065361|P21860-4|ERBB3	REV__nc|ENSG00000065361|P21860-4|ERBB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.3233642578125	2	495.748182	989.481811	-1.0465	-0.00051882	4.3538	0.0021584	3.3073	0.0016396	495.750226276826	64.737	0.87096	64.475	64.23	65.101	-0.2626					39	22	2	0	0	0	0.024261	1	7604	7604		54.776	1.8396	1	1039600	+		15407	20309	10925	10945	16716	16716					-0.013351093448022766
FDDEVLGR	8	Unmodified	_FDDEVLGR_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.29010009765625	2	475.732532	949.45051	2.1782	0.0010363	-1.8051	-0.00085874	0.37314	0.00017752	475.7315218105803	59.071	0.3549	58.884	58.721	59.076	-0.18705					12	9	2	0	0	0	0.027866	1	6716	6716		47.657	3.5405	1	137330	+		15408	21072	10926	10946	16717	16717					-0.026236823788963193
FDDFREAYYW	10	Unmodified	_FDDFREAYYW_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.20452880859375	3	471.203299	1410.58807	-0.67356	-0.00031738	2.2298	0.0010507	1.5562	0.0007333	471.2043133006229	30.065	0.7977	29.887	29.612	30.41	-0.17818					59	18	4	0	0	0	1.0909	1	1895	1895		33.922	2.2874	1	1593100			15409	4843	10927	10947	16718	16718					-0.10080398570130455
FDDFRWNY	8	Unmodified	_FDDFRWNY_					0	0	0		ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.79248046875	2	581.751256	1161.48796	-0.23668	-0.00013769	2.7971	0.0016272	2.5604	0.0014895	581.7529916078689	77.926	0.50577	77.664	77.485	77.991	-0.26202					21	11	3	0	0	0	0.027866	1	9256	9256		30.504	0	1	92819			15410	710	10928	10948	16719	16719					-0.0863259111329171
FDDFRWNY	8	Unmodified	_FDDFRWNY_					0	0	0		ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.751256	1161.48796	-0.051168	-2.9767E-05	3.5543	0.0020677	3.5031	0.002038	581.7533106772158	77.897	0.33292	77.655	77.49	77.823	-0.24232	-0.0065046	2.9419E-05	NaN	30.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91081			15411	710	10928	10948							-0.0863259111329171
FDDFRWNY	8	Unmodified	_FDDFRWNY_					0	0	0		ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	ENPP7|p.G40D|1|0.14|ENSG00000182156|chr17:79731258-79731258|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.751256	1161.48796	-0.66179	-0.00038499	3.7279	0.0021687	3.0661	0.0017837	581.7533944170859	77.827	0.46635	77.665	77.441	77.908	-0.16196	0.0035375	0.00023135	NaN	30.504	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117850			15412	710	10928	10948							-0.0863259111329171
FDEPKATTL	9	Unmodified	_FDEPKATTL_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71|RTEL1	REV__nc|ENSG00000258366|Q9NZ71|RTEL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2644348144531	2	511.263665	1020.51278	-0.69587	-0.00035577	0.89648	0.00045834	0.20061	0.00010257	511.264057219153	80.985	3.0657	80.985	80.626	83.692	0					179	73	5	0	0	0	0.39228	1	10114	10114		66.429	11.653	1	8427000	+		15413	29096	10929	10949	16720	16720					0.003340439694284214
FDESAKKDD	9	Unmodified	_FDESAKKDD_					0	0	0		ENSG00000152208|ENST00000282020|GRID2;GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant;GRID2|p.N607Kfs*56|1|0.12|ENSG00000152208|chr4:93455934-93455935|-/A|frameshift_variant;nc|ENSG00000152208|O43424-2|GRID2;ENST00000505687.5_1_4:93225807-94138074:+|nuORF	ENSG00000152208|ENST00000282020|GRID2	ENSG00000152208|ENST00000282020|GRID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2869262695312	2	527.738011	1053.46147	-0.80904	-0.00042696	-2.536	-0.0013384	-3.3451	-0.0017653	527.7365789259558	30.342	0.54164	30.351	30.082	30.624	0.0086708					20	12	2	0	0	0	0.024405	1	1927	1927		35.618	7.736	1	113140			15414	6253	10930	10950	16721	16721					-0.06312324795294444
FDEVVKQMV	9	Unmodified	_FDEVVKQMV_					0	0	0		nc|ENSG00000115520|Q9H8M1-2|COQ10B;ENSG00000115520|ENST00000263960|COQ10B	nc|ENSG00000115520|Q9H8M1-2|COQ10B	nc|ENSG00000115520|Q9H8M1-2|COQ10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7671508789062	2	547.781167	1093.54778	-0.14069	-7.7068E-05	2.6663	0.0014605	2.5256	0.0013835	548.2849463807462	32.198	0.26	31.961	31.782	32.042	-0.23667					8	5	2	0	0	0	0.024487	1	2189	2189		24.203	5.8783	1	34614			15415	3457	10931	10951	16722	16722					0.004749635057351043
FDFMDTLSD	9	Unmodified	_FDFMDTLSD_					0	0	0		nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-2|PPP2R5E	nc|ENSG00000154001|Q16537-2|PPP2R5E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7899169921875	2	545.723515	1089.43248	-0.4918	-0.00026838	-2.7953	-0.0015255	-3.2871	-0.0017939	545.7218199187382	59.17	0.80627	59.256	58.957	59.763	0.085682					49	21	3	0	0	0	0.024381	1	6628	6628		37.159	14.117	1	956640			15416	6375	10932	10952	16723	16723					-0.10866185415920881
FDGQLLHKE	9	Unmodified	_FDGQLLHKE_					0	0	0			REV__ENSG00000172954|ENST00000379509|LCLAT1	REV__ENSG00000172954|ENST00000379509|LCLAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.2869873046875	2	543.782556	1085.55056	4.5537	0.0024762	-0.32725	-0.00017795	4.2265	0.0022983	543.7815692796459	16.538	0.37453	16.595	16.382	16.757	0.057352					26	14	3	0	0	0	0.87448	1	72	72		34.173	2.6427	1	24858	+		15417	26724	10933	10953	16724	16724					0.01120554954900399
FDGYGKRG	8	Unmodified	_FDGYGKRG_					0	0	0			REV__nc|ENSG00000108469|O94762-4|RECQL5	REV__nc|ENSG00000108469|O94762-4|RECQL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.22393798828125	2	450.222134	898.429715	-0.14099	-6.3475E-05	4.132	0.0018603	3.991	0.0017968	450.22384124508926	23.62	3.5535	23.696	21.737	25.29	0.076241					167	78	3	0	0	0	0.59392	1	889	889		76.847	5.5509	1	772290	+		15418	21738	10934	10954	16725	16725					-0.023562279678913
FDIEDEDKS	9	Unmodified	_FDIEDEDKS_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.300537109375	2	549.235301	1096.45605	0.74871	0.00041122	3.0238	0.0016608	3.7725	0.002072	549.2366456644477	59.84	0.62136	59.84	59.559	60.181	0					39	16	3	0	0	0	0.024523	1	6818	6818		29.15	3.5755	1	838480			15419	3616	10935	10955	16726	16726					-0.08832048377757928
FDIKDVASCH	10	Unmodified	_FDIKDVASCH_					0	0	0		nc|ENSG00000187609|Q8N9H8-4|EXD3	nc|ENSG00000187609|Q8N9H8-4|EXD3	nc|ENSG00000187609|Q8N9H8-4|EXD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.279296875	2	567.766049	1133.51754	0.6965	0.00039545	-0.49767	-0.00028256	0.19883	0.00011289	567.7654145291566	79.462	0.12495	79.216	79.153	79.278	-0.2465					4	2	2	0	0	0	0.03519	1	9499	9499		42.396	9.6456	1	55127			15420	18605	10936	10956	16727	16727					-0.04387395159483276
FDILSLMKL	9	Unmodified	_FDILSLMKL_					0	0	0		ENST00000543046.1_1_12:69218003-69218535:+|nuORF	ENST00000543046.1_1_12:69218003-69218535:+|nuORF	ENST00000543046.1_1_12:69218003-69218535:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3327026367188	2	540.312103	1078.60965	-0.73585	-0.00039759	-2.3417	-0.0012652	-3.0775	-0.0016628	540.3107260305497	79.17	0.95946	79.019	78.737	79.696	-0.15051					50	22	4	0	0	0	0.024257	1	9472	9472		58.23	0	1	1368800			15421	16465	10937	10957	16728	16728					0.07349314924863393
FDILTNQKD	9	Unmodified	_FDILTNQKD_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.286376953125	2	547.279846	1092.54514	-1.4201	-0.00077721	3.853	0.0021087	2.4329	0.0013315	547.7837815616369	84.181	0.42867	84.108	83.917	84.346	-0.072769					15	9	2	0	0	0	0.022411	1	10519	10519		101.6	5.4103	1	58505			15422	1800	10938	10958	16729	16729					0.002568313724395921
FDIPKKIAR	9	Unmodified	_FDIPKKIAR_					0	0	0			REV__ENSG00000048405|ENST00000265827|ZNF800	REV__ENSG00000048405|ENST00000265827|ZNF800	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7302856445312	2	544.334759	1086.65496	0.033634	1.8308E-05	0.54647	0.00029746	0.5801	0.00031577	544.3349325154239	51.646	0.3998	51.528	51.319	51.719	-0.11875					15	8	2	0	0	0	0.024427	1	5330	5330		42.396	18.193	1	274810	+		15423	20138	10939	10959	16730	16730					0.11510301502266884
FDKKDKKW	8	Unmodified	_FDKKDKKW_					0	0	0			REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.8023071289062	2	547.803291	1093.59203	-0.0084729	-4.6415E-06	0.15696	8.5982E-05	0.14848	8.1341E-05	547.8032785066425	56.111	0.7924	55.895	55.598	56.39	-0.21607					65	20	4	0	0	0	0.89627	1	6061	6061		51.335	0.14276	1	1268600	+		15424	24306	10940	10960	16731	16731					0.04897735714234841
FDKLHALEL	9	Unmodified	_FDKLHALEL_					0	0	0			REV__nc|ENSG00000103222|P33527-6|ABCC1	REV__nc|ENSG00000103222|P33527-6|ABCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7763061523438	2	543.303124	1084.5917	-0.39497	-0.00021459	-2.9411	-0.0015979	-3.3361	-0.0018125	543.3011622708614	68.306	1.4331	68.325	67.508	68.941	0.018913					45	37	2	0	0	0	0.021219	1	8034	8034		112.41	42.783	1	1510800	+		15425	21366	10941	10961	16732	16732					0.05278315994360128
FDKLTSVHL	9	Unmodified	_FDKLTSVHL_					0	0	0		ENST00000478954.1_1_7:150210046-150210850:-|nuORF	ENST00000478954.1_1_7:150210046-150210850:-|nuORF	ENST00000478954.1_1_7:150210046-150210850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.31591796875	2	530.295299	1058.57605	-0.48474	-0.00025705	1.4704	0.00077973	0.98563	0.00052268	530.2952853195599	36.629	0.60413	36.412	36.165	36.769	-0.21661					27	14	3	0	0	0	0.02435	1	2863	2863		42.396	0	1	206600			15426	15158	10942	10962	16733	16733					0.04910029477309763
FDKRRETHTL	10	Unmodified	_FDKRRETHTL_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2480163574219	3	434.901954	1301.68403	-0.0054589	-2.3741E-06	1.6904	0.00073517	1.685	0.00073279	434.9029521881047	29.171	0.39365	29.249	29.016	29.41	0.078346					13	9	2	0	0	0	0.03519	1	1688	1688		31.634	6.5083	1	50493	+		15427	21051	10943	10963	16734	16734					0.04525794060600674
FDKWKSYL	8	Unmodified	_FDKWKSYL_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.7854614257812	2	543.784567	1085.55458	-0.1745	-9.4891E-05	0.85259	0.00046362	0.67809	0.00036873	543.7846484204184	16.646	0.40525	16.499	16.354	16.76	-0.14753					36	15	3	0	0	0	0.99042	1	78	78		38.806	7.2763	1	42511	+		15428	21658	10944	10964	16735	16735					0.01522644448596111
FDKYFHDL	8	Unmodified	_FDKYFHDL_					0	0	0			REV__ENST00000354577.8_1_6:131911469-131911529:-|nuORF	REV__ENST00000354577.8_1_6:131911469-131911529:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7760620117188	2	542.758549	1083.50255	-0.22398	-0.00012157	-0.11141	-6.0471E-05	-0.3354	-0.00018204	542.7575656867566	67.858	0.23198	67.858	67.755	67.987	0					5	4	2	0	0	0	0.027866	1	8112	8112		74.255	0.28031	1	28378	+		15429	30756	10945	10965	16736	16736					-0.03586518965153118
FDLALVTPV	9	Unmodified	_FDLALVTPV_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7784118652344	2	487.781493	973.548434	-0.50377	-0.00024573	-0.11354	-5.5384E-05	-0.61731	-0.00030111	487.7812702047306	75.716	2.3612	75.444	74.441	76.802	-0.27266					129	57	4	0	0	0	0.08613	1	8937	8937		115.46	5.1217	1	3428300	+		15430	23737	10946	10966	16737	16737					0.0606012621709624
FDLALVTPV	9	Unmodified	_FDLALVTPV_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.77960205078125	2	487.781493	973.548434	0.4035	0.00019682	-1.0899	-0.00053166	-0.68645	-0.00033484	487.78082070314474	75.545	2.3308	75.37	74.48	76.811	-0.17548					127	56	4	0	0	0	0.27161	1	8920	8920		79.451	2.6769	1	3261400	+		15431	23737	10946	10966	16738	16738					0.0606012621709624
FDLGGHEQAR	10	Unmodified	_FDLGGHEQAR_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.2996215820312	2	565.272887	1128.53122	-1.1935	-0.00067467	2.1789	0.0012317	0.98536	0.000557	565.2740956942115	74.417	0.59359	74.427	74.138	74.731	0.0096512					17	13	2	0	0	0	0.03519	1	9056	9056		47.96	0	1	102860			15432	1659	10947	10967	16739	16739					-0.027904013360284807
FDLGRAHWSP	10	Unmodified	_FDLGRAHWSP_					0	0	0		ENST00000466994.5_1_1:6267553-6267979:+|nuORF;nc|ENSG00000158286|Q6ZRF8-2|RNF207	ENST00000466994.5_1_1:6267553-6267979:+|nuORF	ENST00000466994.5_1_1:6267553-6267979:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.307861328125	2	593.293622	1184.57269	-0.61781	-0.00036654	-0.32505	-0.00019285	-0.94286	-0.00055939	593.2932912889345	67.831	0.58177	67.597	67.175	67.756	-0.23376					25	13	3	0	0	0	0.03519	1	7819	7819		10.866	0	1	197530			15433	14824	10948	10968	16740	16740					-0.012212205766900297
FDLIHGLDTK	10	Unmodified	_FDLIHGLDTK_					0	0	0			REV__nc|ENSG00000010322|Q9Y2I1-4|NISCH	REV__nc|ENSG00000010322|Q9Y2I1-4|NISCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.338134765625	2	579.811313	1157.60807	-0.83781	-0.00048577	-1.3817	-0.0008011	-2.2195	-0.0012869	579.8101935927232	21.8	0.29072	21.609	21.468	21.758	-0.19072					9	5	2	0	0	0	0.03519	1	713	713		25.574	5.5773	1	20058	+		15434	19905	10949	10969	16741	16741					0.0355739716046628
FDLLLAQW	8	Unmodified	_FDLLLAQW_					0	0	0		TRPM5|p.E59Q|1|0.34|ENSG00000070985|chr11:2422264-2422264|C/G|missense_variant	TRPM5|p.E59Q|1|0.34|ENSG00000070985|chr11:2422264-2422264|C/G|missense_variant	TRPM5|p.E59Q|1|0.34|ENSG00000070985|chr11:2422264-2422264|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.3059997558594	2	503.273835	1004.53312	1.3919	0.0007005	-2.1151	-0.0010645	-0.72319	-0.00036396	503.27256385223444	19.386	0.64414	19.153	18.878	19.523	-0.23345					18	12	2	0	0	0	0.027866	1	413	413		31.955	0	1	29598			15435	38109	10950	10970	16742	16742					0.031032594198904917
FDLMANKQD	9	Unmodified	_FDLMANKQD_					0	0	0			REV__nc|ENSG00000144559|Q96BW9|TAMM41	REV__nc|ENSG00000144559|Q96BW9|TAMM41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.314453125	2	541.252774	1080.491	-0.63512	-0.00034376	1.4236	0.00077051	0.78845	0.00042675	541.2535682641322	73.329	0.92615	73.064	72.681	73.607	-0.26479					32	22	2	0	0	0	0.024261	1	8611	8611		45.972	8.8131	1	126540	+		15436	36748	10951	10971	16743	16743					-0.0460308405079104
FDLMTREVI	9	Oxidation (M)	_FDLM(Oxidation (M))TREVI_		FDLM(1)TREVI		FDLM(110)TREVI	0	0	1			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.291015625	2	570.291899	1138.56925	-0.40931	-0.00023343	-1.6733	-0.00095428	-2.0826	-0.0011877	570.2906364605019	73.608	2.0883	73.608	73.254	75.343	0					130	51	3	0	0	0	0.091713	1	9004	9004		113.41	8.665	1	13801000	+		15437	22685	10952	10972	16744	16744		674			0.005503485344206638
FDLQKKLEI	9	Unmodified	_FDLQKKLEI_					0	0	0			REV__ENSG00000187372|ENST00000341948|PCDHB13	REV__ENSG00000187372|ENST00000341948|PCDHB13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.2791748046875	2	567.331882	1132.64921	0.7168	0.00040666	-4.2194	-0.0023938	-3.5026	-0.0019872	567.3293597054676	95.526	2.0615	95.404	94.423	96.484	-0.12251					76	47	2	0	0	0	0.024436	1	11712	11712		30.504	0	1	104950	+		15438	27930	10953	10973	16745	16745					0.08819158199935373
FDLRGKIT	8	Unmodified	_FDLRGKIT_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.2491760253906	2	475.276909	948.539266	1.2001	0.00057036	-2.3804	-0.0011313	-1.1803	-0.00056097	475.27553093992947	51.35	0.5004	51.35	51.067	51.568	0					22	13	2	0	0	0	0.027866	1	5471	5471		15.642	8.4485	1	346950	+		15439	28959	10954	10974	16746	16746					0.06293777651421806
FDLRGKIT	8	Unmodified	_FDLRGKIT_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.276909	948.539266	-0.68545	-0.00032578	-0.29846	-0.00014185	-0.9839	-0.00046763	475.2766037640602	51.295	0.42833	51.382	51.116	51.544	0.087006	-0.021204	0.00091141	NaN	5.9211	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257150	+		15440	28959	10954	10974							0.06293777651421806
FDLRGKIT	8	Unmodified	_FDLRGKIT_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.276909	948.539266	0.83514	0.00039692	-5.5808	-0.0026524	-4.7457	-0.0022555	475.2747437463198	51.661	0.14966	51.477	51.374	51.524	-0.18404	0.073769	-0.0041098	NaN	5.9211	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37602	+		15441	28959	10954	10974							0.06293777651421806
FDLRQLAP	8	Unmodified	_FDLRQLAP_					0	0	0			REV__ENSG00000141699|ENST00000309428|RETREG3	REV__ENSG00000141699|ENST00000309428|RETREG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.26885986328125	2	480.269084	958.523616	0.71731	0.0003445	-0.41916	-0.00020131	0.29815	0.00014319	480.26872216402575	67.205	0.87779	66.957	66.749	67.627	-0.24839					48	20	3	0	0	0	0.95679	1	7720	7720		44.117	1.7207	1	1631700	+		15442	24118	10955	10975	16747	16747					0.042694911343687636
FDLRQLAP	8	Unmodified	_FDLRQLAP_					0	0	0			REV__ENSG00000141699|ENST00000309428|RETREG3	REV__ENSG00000141699|ENST00000309428|RETREG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2693176269531	2	480.269084	958.523616	-0.49667	-0.00023854	1.0423	0.00050056	0.54558	0.00026203	480.2694133637876	67.147	0.97224	66.924	66.714	67.686	-0.22374					55	23	3	0	0	0	0.87148	1	7740	7740		53.351	5.4358	1	2156700	+		15443	24118	10955	10975	16748	16748					0.042694911343687636
FDLVLTKPS	9	Unmodified	_FDLVLTKPS_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2912292480469	2	510.292225	1018.5699	0.56749	0.00028959	-1.3908	-0.00070971	-0.82329	-0.00042012	510.29156181663086	58.705	0.72216	58.464	58.173	58.895	-0.24166					39	17	4	0	0	0	0.37611	1	6435	6435		67.494	1.0644	1	2089600	+		15444	26568	10956	10976	16749	16749					0.06135511245804537
FDNRPLPQL	9	Unmodified	_FDNRPLPQL_					0	0	0			REV__ENST00000477157.5_1_22:17623970-17624138:-|nuORF	REV__ENST00000477157.5_1_22:17623970-17624138:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2997436523438	2	550.298373	1098.58219	-0.69255	-0.00038111	3.778	0.002079	3.0854	0.0016979	550.3002168971618	66.753	0.90437	66.779	66.487	67.391	0.025871					42	21	3	0	0	0	0.2101	1	7879	7879		87.696	2.7809	1	1572600	+		15445	33326	10957	10977	16750	16750					0.03684547708849095
FDNVLCPLF	9	Unmodified	_FDNVLCPLF_					0	0	0			REV__ENST00000356956.5_2_6:160527199-160527481:+|nuORF	REV__ENST00000356956.5_2_6:160527199-160527481:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2882690429688	2	534.265153	1066.51575	0.31812	0.00016996	-0.52778	-0.00028198	-0.20967	-0.00011202	534.2646928873335	25.211	0.89273	25.039	24.643	25.536	-0.17151					47	20	4	0	0	0	0.024354	1	1161	1161		30.504	0	1	1042700	+		15446	30808	10958	10978	16751	16751					-0.01484404177426768
FDPDQPVSR	9	Unmodified	_FDPDQPVSR_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7588500976562	2	530.756538	1059.49852	0.84317	0.00044752	2.9919	0.0015879	3.835	0.0020355	530.7579552194014	96.843	1.1537	96.843	96.528	97.682	-3.0518E-05					59	25	3	0	0	0	0.56934	1	12275	12275		54.776	1.8396	1	616190	+		15447	28209	10959	10979	16752	16752					-0.028846084588622034
FDPESGISGPG	11	Unmodified	_FDPESGISGPG_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2850952148438	2	531.740554	1061.46655	-0.23194	-0.00012333	1.3468	0.00071616	1.1149	0.00059283	531.7411056125209	79.652	0.66997	79.433	79.16	79.83	-0.21923					41	15	4	0	0	0	0.024732	1	9588	9588		25.574	0	1	320980	+		15448	25563	10960	10980	16753	16753					-0.061720209326495024
FDPPGKSNTGA	11	Unmodified	_FDPPGKSNTGA_					0	0	0			REV__nc|ENSG00000120802|P42167-3|TMPO	REV__nc|ENSG00000120802|P42167-3|TMPO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.7642211914062	2	545.76182	1089.50909	2.911	0.0015887	1.6807	0.00091724	4.5917	0.002506	545.7626241551637	17.409	0.73946	17.409	17.201	17.94	0					24	14	3	0	0	0	1.0238	1	158	158		31.53	4.8369	1	169060	+		15449	22561	10961	10981	16754	16754					-0.03208625804427356
FDPSLLKEV	9	Unmodified	_FDPSLLKEV_					0	0	0		ENSG00000100522|ENST00000216410|GNPNAT1;GNPNAT1|p.D18N|1|0.91|ENSG00000100522|chr14:52784599-52784599|C/T|missense_variant	ENSG00000100522|ENST00000216410|GNPNAT1	ENSG00000100522|ENST00000216410|GNPNAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.28759765625	2	524.289682	1046.56481	-0.49173	-0.00025781	-3.779	-0.0019813	-4.2707	-0.0022391	524.2876664873692	27.856	0.63232	27.611	27.289	27.922	-0.24499					38	14	3	0	0	0	0.31037	1	1597	1597		74.255	4.6274	1	2651700			15450	2212	10962	10982	16755	16755					0.04339207383191024
FDPVFKVRG	9	Unmodified	_FDPVFKVRG_					0	0	0		ENSG00000204086|ENST00000373040|RPA4	ENSG00000204086|ENST00000373040|RPA4	ENSG00000204086|ENST00000373040|RPA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7960205078125	2	532.798009	1063.58147	-1.448	-0.0007715	-2.7729	-0.0014774	-4.2209	-0.0022489	532.796446057668	35.578	1.0327	35.556	35.196	36.229	-0.021763					65	27	4	0	0	0	0.72875	1	2745	2745		44.117	3.3386	1	2942600			15451	10298	10963	10983	16756	16756					0.05221753059799994
FDQFIIDL	8	Unmodified	_FDQFIIDL_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7901306152344	2	505.7633	1009.51205	-0.5507	-0.00027853	-3.1079	-0.0015719	-3.6586	-0.0018504	505.7613879658721	42.51	0.51978	42.279	41.997	42.517	-0.23029					18	13	2	0	0	0	0.027866	1	3811	3811		8.2313	0	1	131860	+		15452	23100	10964	10984	16757	16757					0.0076724932038132465
FDQLEDVFL	9	Unmodified	_FDQLEDVFL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2975463867188	2	563.276772	1124.53899	-0.034006	-1.9155E-05	-3.6745	-0.0020697	-3.7085	-0.0020889	563.775476854721	58.393	0.21523	58.215	58.103	58.318	-0.17775					5	4	2	0	0	0	0.024477	1	6416	6416		35.618	14.671	1	101860			15453	874	10965	10985	16758	16758					-0.01829686859082358
FDRFLKIIR	9	Unmodified	_FDRFLKIIR_					0	0	0		ENSG00000181631|ENST00000325602|P2RY13;nc|ENSG00000181631|Q9BPV8-2|P2RY13	ENSG00000181631|ENST00000325602|P2RY13	ENSG00000181631|ENST00000325602|P2RY13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.36669921875	2	604.369133	1206.72371	-0.63259	-0.00038232	-3.3139	-0.0020028	-3.9465	-0.0023851	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	0.96906	1	12935	12935		26.693	5.746	1	4804600			15454	9055	10966	10986	16759	16759					0.12861965801971564
FDRILLLF	8	Unmodified	_FDRILLLF_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7564697265625	2	518.813128	1035.6117	-0.093581	-4.8551E-05	-3.9515	-0.0020501	-4.0451	-0.0020987	518.8107668615452	35.704	0.1939	35.491	35.354	35.548	-0.21246					7	4	2	0	0	0	0.027866	1	2712	2712		45.952	7.1458	1	92895			15455	752	10967	10987	16760	16760					0.09532111724979586
FDRPLYSV	8	Unmodified	_FDRPLYSV_					0	0	0			REV__ENSG00000164976|ENST00000297625|MYORG	REV__ENSG00000164976|ENST00000297625|MYORG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.761474609375	2	498.761092	995.507631	-0.65853	-0.00032845	0.88847	0.00044313	0.22994	0.00011469	498.7612212447688	52.404	0.70598	52.285	51.974	52.68	-0.11876					43	17	4	0	0	0	0.85395	1	5449	5449		54.776	10.245	1	1121500	+		15456	25828	10968	10988	16761	16761					0.009697848974610679
FDRRRWSFWWR	11	Unmodified	_FDRRRWSFWWR_					0	0	0			REV__ENSG00000132793|ENST00000373257|LPIN3	REV__ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.1819763183594	4	425.219463	1696.84875	0.20494	8.7143E-05	-2.8224	-0.0012001	-2.6175	-0.001113	425.2191157118619	34.783	0.28303	34.568	34.388	34.671	-0.21555					10	6	2	0	0	0	0.024903	1	2572	2572		1.1482	0.77682	1	140650	+		15457	23321	10969	10989	16762	16762					0.028196509910685563
FDSDQLTQT	9	Unmodified	_FDSDQLTQT_					0	0	0			REV__ENSG00000176371|ENST00000546148|ZSCAN2	REV__ENSG00000176371|ENST00000546148|ZSCAN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7672119140625	2	527.738011	1053.46147	-0.85197	-0.00044962	-2.8416	-0.0014996	-3.6936	-0.0019492	527.736468531427	29.794	0.44514	29.803	29.597	30.042	0.0086689					14	10	2	0	0	0	0.023274	1	1839	1839		87.696	21.267	1	72415	+		15458	27014	10970	10990	16763	16763					-0.06312324795294444
FDSHMLWFL	9	Unmodified	_FDSHMLWFL_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8;ENST00000481831.1_1_1:160188107-160188731:-|nuORF	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	598.28564453125	2	598.283877	1194.5532	-0.41736	-0.0002497	3.5216	0.0021069	3.1042	0.0018572	598.2859532384165	74.285	0.58829	74.026	73.78	74.368	-0.25887					29	13	3	0	0	0	0.55828	1	9055	9055		55.504	5.9682	1	1211200			15459	4647	10971	10991	16764	16764					-0.036293129118121215
FDSILPTAEP	10	Unmodified	_FDSILPTAEP_					0	0	0		Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|143|3|anti-sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|143|3|anti-sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|143|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2752685546875	2	545.276772	1088.53899	-0.96677	-0.00052716	-3.4439	-0.0018779	-4.4107	-0.0024051	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	1.0616	1	9743	9743		37.812	3.639	1	52905000			15460	38069	10972	10992	16765	16765					-0.0017368685910241766
FDSNHCGLIW	10	Unmodified	_FDSNHCGLIW_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.3599853515625	2	596.266216	1190.51788	-0.42938	-0.00025602	3.0114	0.0017956	2.582	0.0015396	596.26828511762	58.778	0.76669	58.597	58.145	58.911	-0.18134					60	18	4	0	0	0	0.03519	1	6498	6498		40.778	19.831	1	1840000	+		15461	27723	10973	10993	16766	16766					-0.06975975439604554
FDSRLTAEM	9	Unmodified	_FDSRLTAEM_					0	0	0			REV__ENST00000471382.5_1_1:212859833-212860136:-|nuORF	REV__ENST00000471382.5_1_1:212859833-212860136:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2968139648438	2	535.252774	1068.491	0.39377	0.00021077	-2.434	-0.0013028	-2.0402	-0.001092	535.2509307603079	79.629	0.4589	79.383	79.153	79.612	-0.2465					15	10	2	0	0	0	0.024397	1	9530	9530		47.657	0	1	103970	+		15462	33173	10974	10994	16767	16767					-0.04051084050820464
FDSTAVLLP	9	Unmodified	_FDSTAVLLP_					0	0	0		ENST00000485978.1_1_9:136338979-136343630:-|nuORF;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6	ENST00000485978.1_1_9:136338979-136343630:-|nuORF	ENST00000485978.1_1_9:136338979-136343630:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.7615051269531	2	481.7633	961.512048	0.062852	3.028E-05	1.193	0.00057475	1.2559	0.00060502	481.7635380666748	77.807	0.38002	77.645	77.484	77.864	-0.16196					10	8	2	0	0	0	0.024262	1	9260	9260		47.916	20.033	1	47004			15463	6807	10975	10995	16768	16768					0.029752493203773156
FDTSIGPLVY	10	Unmodified	_FDTSIGPLVY_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.3108520507812	2	556.28714	1110.55973	0.40814	0.00022704	-1.8724	-0.0010416	-1.4642	-0.00081454	556.2885365997006	72.499	0.78194	72.499	72.17	72.952	0					24	18	2	0	0	0	0.03519	1	8807	8807		44.117	0	1	223090			15464	1930	10976	10996	16769	16769					0.008869035205634646
FDTSIGPLVY	10	Unmodified	_FDTSIGPLVY_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.311279296875	2	556.28714	1110.55973	0.39904	0.00022198	3.0631	0.001704	3.4621	0.0019259	556.2883815754386	72.767	0.85667	72.485	72.1	72.957	-0.28124					40	20	3	0	0	0	0.03519	1	8819	8819		51.335	1.8939	1	454700			15465	1930	10976	10996	16770	16770					0.008869035205634646
FDVDYFASL	9	Unmodified	_FDVDYFASL_					0	0	0			REV__ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant	REV__ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8209228515625	2	538.75039	1075.48623	-1.8863	-0.0010163	-0.75738	-0.00040804	-2.6437	-0.0014243	538.7498803997214	65.065	0.57137	64.803	64.379	64.95	-0.2626					19	14	2	0	0	0	0.024506	1	7639	7639		23.042	3.939	1	78242	+		15466	24848	10977	10997	16771	16771					-0.04849644921910112
FDVESPSHSRE	11	Unmodified	_FDVESPSHSRE_					0	0	0		ENST00000591030.5_1_19:6477238-6481723:-|nuORF	ENST00000591030.5_1_19:6477238-6481723:-|nuORF	ENST00000591030.5_1_19:6477238-6481723:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	430.5304870605469	3	430.530074	1288.56839	0.57981	0.00024963	0.071253	3.0677E-05	0.65107	0.0002803	430.5301424518309	23.578	1.2953	23.376	23.014	24.31	-0.20193					82	29	5	0	0	0	0.94885	4	943	932;943;954;967		48.188	3.5091	1	3916100			15467	17343	10978	10998	16772;16773;16774;16775	16773					-0.06434774580907288
FDVFVVNI	8	Unmodified	_FDVFVVNI_					0	0	0		ENSG00000173376|ENST00000379692|NDNF	ENSG00000173376|ENST00000379692|NDNF	ENSG00000173376|ENST00000379692|NDNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7608947753906	2	476.760561	951.506569	3.1342	0.0014943	-2.1907	-0.0010445	0.94345	0.0004498	476.7593136802474	19.164	0.64227	19.23	18.995	19.637	0.066195					26	12	3	0	0	0	0.81662	1	338	338		57.811	11.859	1	255920			15468	8370	10979	10999	16776	16776					0.028875705285713593
FDVSFDHGKNL	11	Unmodified	_FDVSFDHGKNL_					0	0	0			REV__nc|ENSG00000138669|Q13237-2|PRKG2	REV__nc|ENSG00000138669|Q13237-2|PRKG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.2166748046875	3	426.875293	1277.60405	-0.038955	-1.6629E-05	0.5273	0.00022509	0.48835	0.00020846	426.8746066600857	26.784	0.42578	26.616	26.506	26.931	-0.16816					15	9	2	0	0	0	0.024748	1	1420	1420		13.508	0	1	99681	+		15469	23880	10980	11000	16777	16777					-0.023646923332080405
FDVWLLVL	8	Unmodified	_FDVWLLVL_					0	0	0		ENST00000368457.2_1_1:154931107-154931215:-|nuORF	ENST00000368457.2_1_1:154931107-154931215:-|nuORF	ENST00000368457.2_1_1:154931107-154931215:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.76654052734375	2	502.794404	1003.57425	0.3744	0.00018825	-3.8361	-0.0019288	-3.4617	-0.0017405	502.7918452904522	59.237	0.76631	59.056	58.669	59.435	-0.18133					22	18	2	0	0	0	0.027866	1	6488	6488		29.842	0	1	114820			15470	12895	10981	11001	16778	16778					0.07261020459361589
FDYHNEVKV	9	Unmodified	_FDYHNEVKV_					0	0	0			REV__ENSG00000157152|ENST00000621198|SYN2	REV__ENSG00000157152|ENST00000621198|SYN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.803466796875	2	575.780013	1149.54547	-0.020903	-1.2036E-05	0.093301	5.3721E-05	0.072398	4.1685E-05	575.7801727981304	53.324	0.51992	53.197	52.951	53.471	-0.12705					35	13	4	0	0	0	0.024457	1	5582	5582		37.159	5.6293	1	1137200	+		15471	25116	10982	11002	16779	16779					-0.023317489077498976
FDYHNEVKV	9	Unmodified	_FDYHNEVKV_					0	0	0			REV__ENSG00000157152|ENST00000621198|SYN2	REV__ENSG00000157152|ENST00000621198|SYN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8037109375	2	575.780013	1149.54547	-0.3114	-0.0001793	1.4449	0.00083194	1.1335	0.00065265	575.7802816271088	53.559	0.69424	53.3	53.039	53.733	-0.25838					47	19	4	0	0	0	0.024457	1	5605	5605		29.15	0	1	1293500	+		15472	25116	10982	11002	16780	16780					-0.023317489077498976
FDYNVASI	8	Unmodified	_FDYNVASI_					0	0	0			REV__ENST00000595279.1_1_19:3959101-3961233:-|nuORF	REV__ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.76409912109375	2	464.724175	927.433798	0.47395	0.00022025	-3.5889	-0.0016678	-3.1149	-0.0014476	464.7223869555838	21.859	0.38363	21.681	21.397	21.781	-0.17721					13	7	2	0	0	0	0.027866	1	701	701		23.042	0	1	17557	+		15473	26173	10983	11003	16781	16781					-0.03282183264855121
FDYSQERVN	9	Unmodified	_FDYSQERVN_					0	0	0		ENST00000507994.1_1_4:100761564-100785013:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENSG00000070190|ENST00000512369|DAPP1	ENST00000507994.1_1_4:100761564-100785013:+|nuORF	ENST00000507994.1_1_4:100761564-100785013:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.30615234375	2	579.264727	1156.5149	0.0012212	7.0743E-07	-0.8627	-0.00049973	-0.86148	-0.00049902	579.2640363694244	75.237	0.85136	75.247	74.973	75.824	0.010368					42	22	3	0	0	0	0.024337	1	9239	9239		67.494	18.052	1	539450			15474	1420	10984	11004	16782	16782					-0.05709527292742678
FEAQEKLYK	9	Unmodified	_FEAQEKLYK_					0	0	0		nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF	nc|ENSG00000110619|P49589|CARS1	nc|ENSG00000110619|P49589|CARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3056030273438	2	578.305864	1154.59717	-0.53338	-0.00030846	0.16001	9.2534E-05	-0.37337	-0.00021592	578.3057475519681	42.127	0.97232	41.897	41.544	42.517	-0.23029					91	26	5	0	0	0	0.091713	1	3750	3750		113.41	17.221	1	4599800			15475	3050	10985	11005	16783	16783					0.02605994786199517
FEAREEIKL	9	Unmodified	_FEAREEIKL_					0	0	0			REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF	REV__ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.8104858398438	2	567.811313	1133.60807	0.3344	0.00018988	-1.4225	-0.00080772	-1.0881	-0.00061784	567.8103965361772	69.529	1.6331	69.236	68.405	70.038	-0.29292					131	41	6	0	0	0	0.37611	1	8359	8359		67.494	2.0283	1	12873000	+		15476	22665	10986	11006	16784	16784					0.04661397160452907
FEAVKKKAGFI	11	Unmodified	_FEAVKKKAGFI_					0	0	0		ENSG00000163738|ENST00000325278|MTHFD2L;nc|ENSG00000163738|Q9H903-2|MTHFD2L;nc|ENSG00000163738|Q9H903-1|MTHFD2L	ENSG00000163738|ENST00000325278|MTHFD2L	ENSG00000163738|ENST00000325278|MTHFD2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.3698120117188	2	619.368798	1236.72304	-0.1507	-9.3342E-05	3.5298	0.0021862	3.3791	0.0020929	619.370979083808	100.11	0.78519	100.11	99.704	100.49	0					55	19	4	0	0	0	1.0344	1	12802	12802		29.17	4.6509	1	1092500			15477	7138	10987	11007	16785	16785					0.11415126362271621
FECRQRLI	8	Unmodified	_FECRQRLI_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7901000976562	2	532.787118	1063.55968	0.75748	0.00040358	4.3497	0.0023175	5.1072	0.002721	532.7894674936734	64.006	1.2417	64.006	63.631	64.873	0					130	33	6	0	0	0	0.97924	1	7605	7605		40.573	1.7665	1	62700000			15478	11062	10988	11008	16786	16786					0.030446250395925745
FECVTPKLEHF	11	Unmodified	_FECVTPKLEHF_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7792053222656	3	450.556796	1348.64856	-0.73543	-0.00033135	-0.16541	-7.4526E-05	-0.90083	-0.00040588	450.55648486535637	30.291	0.54394	30.113	29.909	30.453	-0.17818					26	12	3	0	0	0	0.024723	1	1959	1959		35.178	10.052	1	118530			15479	7418	10989	11009	16787	16787					-0.01182004511406376
FEDHGLEP	8	Unmodified	_FEDHGLEP_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.25140380859375	2	472.211432	942.408311	-0.44534	-0.0002103	4.4255	0.0020898	3.9802	0.0018795	472.2133250336897	27.681	1.0947	27.524	27.104	28.198	-0.15664					37	26	2	0	0	0	0.027866	1	1519	1519		33.516	3.674	1	90656	+		15480	26818	10990	11010	16788	16788					-0.06519657787271171
FEDHGLEP	8	Unmodified	_FEDHGLEP_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.211432	942.408311	-0.61745	-0.00029157	4.7776	0.002256	4.1601	0.0019645	472.21352068058786	27.785	1.4982	27.617	27.057	28.555	-0.16816	0.046365	0.0001847	NaN	33.516	46	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75357	+		15481	26818	10990	11010							-0.06519657787271171
FEDLFRLV	8	Unmodified	_FEDLFRLV_					0	0	0			REV__ENST00000230895.10_2_5:10680115-10680181:-|nuORF	REV__ENST00000230895.10_2_5:10680115-10680181:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.78515625	2	519.784567	1037.55458	-0.58565	-0.00030441	0.31768	0.00016513	-0.26797	-0.00013928	519.7846388972569	78.101	0.98548	78.101	77.672	78.658	0					69	23	4	0	0	0	0.77775	1	9646	9646		60.972	7.6205	1	4254600	+		15482	29408	10991	11011	16789	16789					0.037306444486148393
FEDLFRLV	8	Unmodified	_FEDLFRLV_					0	0	0			REV__ENST00000230895.10_2_5:10680115-10680181:-|nuORF	REV__ENST00000230895.10_2_5:10680115-10680181:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7850341796875	2	519.784567	1037.55458	0.69291	0.00036016	-1.0358	-0.00053837	-0.34285	-0.00017821	519.783910456929	78.243	1.0313	78.051	77.643	78.674	-0.19211					76	24	4	0	0	0	0.845	1	9630	9630		55.504	2.5675	1	4071600	+		15483	29408	10991	11011	16790	16790					0.037306444486148393
FEDRTQPAGP	10	Unmodified	_FEDRTQPAGP_					0	0	0		ENST00000507668.6_1_5:79438905-79439037:-|nuORF	ENST00000507668.6_1_5:79438905-79439037:-|nuORF	ENST00000507668.6_1_5:79438905-79439037:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.814697265625	2	559.26727	1116.51999	-0.75832	-0.00042411	-2.6886	-0.0015037	-3.447	-0.0019278	559.2654975558532	81.705	0.54668	81.563	81.11	81.656	-0.14249					18	12	2	0	0	0	0.03519	1	9775	9775		62.107	1.9892	1	66257			15484	15768	10992	11012	16791	16791					-0.0336122343014722
FEDVAVHFTKT	11	Unmodified	_FEDVAVHFTKT_					0	0	0		ENST00000562210.1_1_16:71512659-71516017:-|nuORF;nc|ENSG00000157429|P17023-2|ZNF19;ENSG00000157429|ENST00000288177|ZNF19	ENST00000562210.1_1_16:71512659-71516017:-|nuORF	ENST00000562210.1_1_16:71512659-71516017:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	431.8884582519531	3	431.88731	1292.6401	-0.074693	-3.2259E-05	3.2432	0.0014007	3.1685	0.0013684	431.8886982495974	21.969	0.76649	21.778	21.275	22.042	-0.19072					31	15	3	0	0	0	1.0379	1	725	725		28.384	2.3204	1	362000			15485	6596	10993	11013	16792	16792					0.005487648435973824
FEEERMVAGW	10	Unmodified	_FEEERMVAGW_					0	0	0		ENST00000541595.6_3_19:9435063-9466338:+|nuORF	ENST00000541595.6_3_19:9435063-9466338:+|nuORF	ENST00000541595.6_3_19:9435063-9466338:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.2835693359375	2	627.284605	1252.55466	-1.0406	-0.00065275	-1.9633	-0.0012316	-3.0039	-0.0018843	627.2832544566149	68.908	1.1146	68.646	68.301	69.415	-0.26165					80	26	4	0	0	0	0.77808	1	8004	8004		62.107	14.148	1	3857800			15486	16441	10994	11014	16793	16793					-0.06151723613697868
FEEGWVEDL	9	Unmodified	_FEEGWVEDL_					0	0	0			REV__ENSG00000167325|ENST00000300738|RRM1	REV__ENSG00000167325|ENST00000300738|RRM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.30859375	2	562.250754	1122.48696	-0.44567	-0.00025058	-2.9317	-0.0016483	-3.3774	-0.0018989	562.2489534573924	68.553	0.76044	68.553	68.256	69.016	0					36	19	2	0	0	0	0.023596	1	8287	8287		85.359	23.252	1	624730	+		15487	26132	10995	11015	16794	16794					-0.06938850272854324
FEELKQNLN	9	Unmodified	_FEELKQNLN_					0	0	0			REV__ENSG00000165325|ENST00000298050|DEUP1	REV__ENSG00000165325|ENST00000298050|DEUP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.8211669921875	2	567.793121	1133.57169	-0.0068016	-3.8619E-06	-0.67658	-0.00038416	-0.68338	-0.00038802	567.7925410882856	68.116	0.46407	67.828	67.593	68.057	-0.28835					27	11	3	0	0	0	0.024527	1	8155	8155		31.53	0	1	302900	+		15488	25875	10996	11016	16795	16795					0.01024520263786144
FEEVFIYIG	9	Unmodified	_FEEVFIYIG_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2661743164062	2	558.784233	1115.55391	0.54784	0.00030612	2.8756	0.0016068	3.4234	0.001913	559.2877698872322	83.548	0.68862	83.336	82.747	83.436	-0.21159					27	15	2	0	0	0	0.024386	1	10071	10071		33.516	0	1	117850			15489	9475	10997	11017	16796	16796					0.0007580500889616815
FEEVWQRRWWQ	11	Unmodified	_FEEVWQRRWWQ_					0	0	0			REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.3002319335938	3	550.603908	1648.78989	-0.87124	-0.00047971	-0.86638	-0.00047703	-1.7376	-0.00095674	550.6034141893001	26.846	0.3734	26.833	26.579	26.953	-0.012983					19	8	3	0	0	0	0.024896	1	1359	1359		6.3209	3.4691	1	93912	+		15490	21075	10998	11018	16797	16797					-0.008548700939172704
FEEVWQRRWWQ	11	Unmodified	_FEEVWQRRWWQ_					0	0	0			REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	550.603908	1648.78989	-0.43939	-0.00024193	-1.51	-0.00083143	-1.9494	-0.0010734	550.6031379568286	26.794	0.37607	26.794	26.658	27.034	0	0.055578	-0.0004254	NaN	6.3209	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126170	+		15491	21075	10998	11018							-0.008548700939172704
FEEVWQRRWWQ	11	Unmodified	_FEEVWQRRWWQ_					0	0	0			REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	550.603908	1648.78989	-0.67726	-0.0003729	-0.010019	-5.5165E-06	-0.68728	-0.00037842	550.6033890262519	26.975	0.54393	26.733	26.41	26.954	-0.24217	-0.0056212	0.0020524	NaN	6.3209	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280320	+		15492	21075	10998	11018							-0.008548700939172704
FEEVWQRRWWQ	11	Unmodified	_FEEVWQRRWWQ_					0	0	0			REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	550.603908	1648.78989	-0.32833	-0.00018078	-1.504	-0.00082809	-1.8323	-0.0010089	550.9375205082529	26.765	0.51273	26.597	26.379	26.892	-0.16816	-0.14089	-0.00041535	NaN	6.3209	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283890	+		15493	21075	10998	11018							-0.008548700939172704
FEEVWQRRWWQ	11	Unmodified	_FEEVWQRRWWQ_					0	0	0			REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	REV__ENST00000504717.1_1_22:50941822-50943237:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	550.603908	1648.78989	-0.62773	-0.00034563	-1.0282	-0.00056612	-1.6559	-0.00091175	550.6033206480741	26.889	0.47056	26.732	26.503	26.974	-0.15664	-0.0063047	0.00037055	NaN	6.3209	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319770	+		15494	21075	10998	11018							-0.008548700939172704
FEFKKKEQ	8	Unmodified	_FEFKKKEQ_					0	0	0			REV__ENSG00000165895|ENST00000298815|ARHGAP42	REV__ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.295654296875	2	542.295299	1082.57605	3.2511	0.0017631	-2.7683	-0.0015012	0.48286	0.00026185	542.2936863791565	18.412	1.8912	18.475	18.222	20.113	0.063307					66	38	4	0	0	0	1.0574	1	268	268		26.796	0.10319	1	653300	+		15495	25942	10999	11019	16798	16798					0.038060294773458736
FEGFYKSTY	9	Unmodified	_FEGFYKSTY_					0	0	0		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;nc|ENSG00000164308|Q6P179-4|ERAP2;nc|ENSG00000164308|Q6P179-2|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.7284545898438	2	571.263665	1140.51278	0.38564	0.0002203	-4.3431	-0.0024811	-3.9575	-0.0022608	571.261059933246	51.712	0.32661	51.593	51.431	51.758	-0.11875					13	8	2	0	0	0	0.024381	1	5347	5347		45.952	16.11	1	208300			15496	7258	11000	11020	16799	16799					-0.051859560305729246
FEGHPTRGYPC	11	Unmodified	_FEGHPTRGYPC_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000546525.5_1_6:169959876-170034596:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8467102050781	3	421.857357	1262.55024	-0.11519	-4.8593E-05	4.0414	0.0017049	3.9262	0.0016563	421.85901147550084	33.275	0.27907	33.044	32.835	33.114	-0.23107					11	6	3	0	0	0	0.02474	1	2362	2362		18.332	0	1	104750			15497	9340	11001	11021	16800	16800					-0.07053188036570646
FEGMELLIK	9	Oxidation (M)	_FEGM(Oxidation (M))ELLIK_		FEGM(1)ELLIK		FEGM(61)ELLIK	0	0	1			REV__nc|ENSG00000160752|P14324-2|FDPS	REV__nc|ENSG00000160752|P14324-2|FDPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.29150390625	2	548.291368	1094.56818	0.15623	8.5657E-05	-0.33756	-0.00018508	-0.18133	-9.9424E-05	548.2910944064284	72.728	1.0955	72.446	72.062	73.157	-0.28124					59	26	4	0	0	0	0.4752	1	8821	8821		60.972	7.6205	1	7828100	+		15498	25341	11002	11022	16801	16801		751			0.024681341655195865
FEGYVSSSKED	11	Unmodified	_FEGYVSSSKED_					0	0	0		nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.8917236328125	3	416.519064	1246.53536	-1.1446	-0.00047673	2.2779	0.00094879	1.1334	0.00047206	416.5198413538949	38.567	1.0483	38.388	37.908	38.956	-0.17929					41	29	2	0	0	0	0.024723	1	3116	3116		28.577	4.3449	1	138610			15499	18581	11003	11023	16802	16802					-0.07804401423595664
FEGYVSSSKED	11	Unmodified	_FEGYVSSSKED_					0	0	0		nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	416.519064	1246.53536	-0.7559	-0.00031484	2.312	0.00096301	1.5561	0.00064816	416.519807377873	38.364	0.69431	38.142	37.959	38.653	-0.22149	-0.14878	0.00050892	NaN	39.873	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97928			15500	18581	11003	11023							-0.07804401423595664
FEGYVSSSKED	11	Unmodified	_FEGYVSSSKED_					0	0	0		nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	416.519064	1246.53536	-0.030936	-1.2885E-05	1.0687	0.00044514	1.0378	0.00043225	416.51936898662007	38.562	0.8176	38.343	37.926	38.744	-0.21848	0.052232	-0.0010447	NaN	39.873	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96085			15501	18581	11003	11023							-0.07804401423595664
FEHDLAPM	8	Unmodified	_FEHDLAPM_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2902526855469	2	480.218203	958.421853	-0.97995	-0.00047059	4.3524	0.0020901	3.3725	0.0016195	480.22008321741936	49.344	1.9747	49.419	48.198	50.173	0.074196					74	54	2	0	0	0	0.027866	1	4898	4898		37.028	8.7742	1	146340	+		15502	24901	11004	11024	16803	16803					-0.059021232797022094
FEHSVVFMV	9	Oxidation (M)	_FEHSVVFM(Oxidation (M))V_		FEHSVVFM(1)V		FEHSVVFM(63)V	0	0	1			REV__CTSO|p.G306Efs*36|1|0.16|ENSG00000256043|chr4:155928350-155928350|C/-|frameshift_variant	REV__CTSO|p.G306Efs*36|1|0.16|ENSG00000256043|chr4:155928350-155928350|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7681884765625	2	555.76806	1109.52157	0.89659	0.0004983	-0.80374	-0.00044669	0.092852	5.1604E-05	555.7674431702645	96.858	0.80162	96.735	96.484	97.285	-0.12314					47	17	4	0	0	0	0.43973	1	12007	12007		63.306	8.53	1	705630	+		15503	19627	11005	11025	16804	16804		605			-0.028813056657327252
FEIERHDSC	9	Unmodified	_FEIERHDSC_					0	0	0		ENSG00000095587|ENST00000357947|TLL2;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	ENSG00000095587|ENST00000357947|TLL2;nc|ENSG00000168487|P13497-4|BMP1	nc|ENSG00000168487|P13497-4|BMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.2454833984375	2	568.24548	1134.47641	0.30474	0.00017317	-0.22056	-0.00012533	0.084187	4.7839E-05	568.2451426761388	17.133	0.21739	16.99	16.867	17.084	-0.14278					14	5	3	0	0	0	0.6504	1	117	117		49.442	3.4896	1	44323			15504	2031;7829	11006	11026	16805	16805					-0.08545156198920267
FEIERHDSC	9	Unmodified	_FEIERHDSC_					0	0	0		ENSG00000095587|ENST00000357947|TLL2;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;ENST00000354870.5_1_8:22035226-22069238:+|nuORF;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	ENSG00000095587|ENST00000357947|TLL2;nc|ENSG00000168487|P13497-4|BMP1	nc|ENSG00000168487|P13497-4|BMP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	568.24548	1134.47641	2.8847	0.0016392	-2.7977	-0.0015898	0.086951	4.941E-05	568.2437166632636	17.013	0.32669	17.013	16.874	17.201	0	0.011435	-0.0013082	NaN	49.442	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61479			15505	2031;7829	11006	11026							-0.08545156198920267
FEIKLPSV	8	Unmodified	_FEIKLPSV_					0	0	0		ENST00000401000.8_1_1:150446088-150446325:+|nuORF	ENST00000401000.8_1_1:150446088-150446325:+|nuORF	ENST00000401000.8_1_1:150446088-150446325:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.25341796875	2	466.776211	931.537869	-0.16022	-7.4785E-05	-4.2535	-0.0019854	-4.4137	-0.0020602	466.77409786603914	39.812	0.49911	39.662	39.433	39.933	-0.1497					27	12	3	0	0	0	0.027866	1	3439	3439		44.117	13.799	1	363400			15506	13664	11007	11027	16806	16806					0.06936143562654706
FEIRRLSSV	9	Unmodified	_FEIRRLSSV_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.74853515625	2	553.819473	1105.62439	-0.34172	-0.00018925	0.0075622	4.1881E-06	-0.33415	-0.00018506	553.8190866773671	43.408	0.66163	43.296	43.071	43.733	-0.11253					37	17	3	0	0	0	0.024484	1	3949	3949		37.812	14.769	1	1288400			15507	9697	11008	11028	16807	16807					0.07580523117235316
FEIRRLSSV	9	Unmodified	_FEIRRLSSV_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.819473	1105.62439	-0.7086	-0.00039243	0.33933	0.00018793	-0.36927	-0.00020451	553.8193455832783	43.579	0.54284	43.342	43.136	43.679	-0.23736	0.0022546	0.00012322	NaN	30.318	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1402800			15508	9697	11008	11028							0.07580523117235316
FEKNKKISL	9	Unmodified	_FEKNKKISL_					0	0	0		nc|ENSG00000120669|Q9NX45-3|SOHLH2;nc|ENSG00000120669|Q9NX45-2|SOHLH2;ENSG00000120669|ENST00000379881|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8041381835938	2	553.832049	1105.64954	0.36083	0.00019984	-1.0419	-0.00057701	-0.68102	-0.00037717	553.8314334294197	68.288	0.39861	68.057	67.917	68.316	-0.23048					22	9	3	0	0	0	0.024344	1	7874	7874		54.776	5.3348	1	180550			15509	18216	11009	11029	16808	16808					0.10094577919812764
FEKRIVTL	8	Unmodified	_FEKRIVTL_					0	0	0		nc|ENSG00000080709|Q9H2S1-2|KCNN2;nc|ENSG00000080709|Q9H2S1|KCNN2;ENSG00000080709|ENST00000673685|KCNN2	nc|ENSG00000080709|Q9H2S1-2|KCNN2	nc|ENSG00000080709|Q9H2S1-2|KCNN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.76068115234375	2	503.30821	1004.60187	-0.76388	-0.00038447	0.1012	5.0933E-05	-0.66269	-0.00033354	503.30820749656675	65.257	0.60942	65.006	64.743	65.353	-0.25112					27	14	3	0	0	0	0.027866	1	7434	7434		19.997	0	1	530390			15510	1693	11010	11030	16809	16809					0.09974923719619255
FEKTNEMLL	9	Unmodified	_FEKTNEMLL_					0	0	0		ENSG00000105700|ENST00000222307|KXD1	ENSG00000105700|ENST00000222307|KXD1	ENSG00000105700|ENST00000222307|KXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.7337646484375	2	562.78645	1123.55835	-0.071084	-4.0005E-05	-1.5932	-0.00089662	-1.6643	-0.00093663	562.7851490064223	78.633	0.51633	78.478	78.34	78.856	-0.15591					15	11	2	0	0	0	0.024405	1	9373	9373		35.618	0	1	75809			15511	2712	11011	11031	16810	16810					0.0015094616016995133
FELDGEMVAL	10	Unmodified	_FELDGEMVAL_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.30908203125	2	562.270632	1122.52671	-0.39073	-0.0002197	0.91619	0.00051515	0.52546	0.00029545	562.2705800569611	68.908	0.6766	68.923	68.532	69.209	0.015121					29	17	3	0	0	0	0.03519	1	8225	8225		82.305	0	1	128290			15512	8084	11012	11032	16811	16811					-0.029650465937720583
FELGVGNRR	9	Unmodified	_FELGVGNRR_					0	0	0			REV__nc|ENSG00000125851|P16519-3|PCSK2	REV__nc|ENSG00000125851|P16519-3|PCSK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2883911132812	2	524.28834	1046.56213	-1.3974	-0.00073262	0.68298	0.00035808	-0.71438	-0.00037454	524.2887223328601	28.554	1.0896	28.308	27.921	29.011	-0.24524					77	25	5	0	0	0	0.77768	1	1692	1692		40.778	6.6056	1	3608600	+		15513	22852	11013	11033	16812	16812					0.04070796768905893
FELLTHVLY	9	Unmodified	_FELLTHVLY_					0	0	0			REV__ENST00000491169.1_1_1:207070885-207076401:+|nuORF	REV__ENST00000491169.1_1_1:207070885-207076401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8116455078125	2	567.813325	1133.6121	-0.5721	-0.00032485	-2.8793	-0.0016349	-3.4514	-0.0019597	567.8115204773222	69.52	1.6187	69.253	68.502	70.121	-0.26724					77	34	4	0	0	0	0.25032	1	8058	8058		82.305	11.489	1	2508700	+		15514	19321	11014	11034	16813	16813					0.050634866541713563
FELLTHVLY	9	Unmodified	_FELLTHVLY_					0	0	0			REV__ENST00000491169.1_1_1:207070885-207076401:+|nuORF	REV__ENST00000491169.1_1_1:207070885-207076401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8110961914062	2	567.813325	1133.6121	0.23907	0.00013575	-3.6713	-0.0020846	-3.4322	-0.0019489	567.8110441978595	69.429	1.6416	69.179	68.462	70.103	-0.25063					77	37	4	0	0	0	0.31247	1	8067	8067		73.975	21.676	1	3027300	+		15515	19321	11014	11034	16814	16814					0.050634866541713563
FELMAALMTL	10	Unmodified	_FELMAALMTL_					0	0	0		ENST00000465374.1_1_1:172349975-172350041:-|nuORF	ENST00000465374.1_1_1:172349975-172350041:-|nuORF	ENST00000465374.1_1_1:172349975-172350041:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.8453369140625	2	570.295596	1138.57664	-1.3855	-0.00079012	-1.8793	-0.0010718	-3.2648	-0.0018619	570.294205798133	38.707	0.24603	38.707	38.515	38.761	0					7	5	2	0	0	0	0.03519	1	3250	3250		14.137	0	1	62260			15516	14780	11015	11035	16815	16815					0.012893648105091415
FELMGEVTI	9	Unmodified	_FELMGEVTI_					0	0	0		nc|ENSG00000100095|Q9BYH1-4|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L;nc|ENSG00000100095|Q9BYH1-3|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8208618164062	2	519.762443	1037.51033	-1.1015	-0.00057253	-4.2424	-0.002205	-5.3439	-0.0027776	520.2602461368554	80.56	0.33885	80.408	80.259	80.598	-0.15168					10	7	2	0	0	0	0.023007	1	10005	10005		66.429	0	1	44849			15517	2131	11016	11036	16816	16816					-0.006921277598848974
FELPEKVAAM	10	Unmodified	_FELPEKVAAM_					0	0	0			REV__ENSG00000115816|ENST00000234170|CEBPZ	REV__ENSG00000115816|ENST00000234170|CEBPZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.81103515625	2	567.796817	1133.57908	0.58023	0.00032945	-3.0171	-0.0017131	-2.4369	-0.0013837	567.7949003524492	71.37	0.54237	71.081	70.922	71.464	-0.28858					24	13	3	0	0	0	0.03519	1	8593	8593		27.882	10.517	1	271870	+		15518	22231	11017	11037	16817	16817					0.01763536539829147
FELVGEPSIY	10	Unmodified	_FELVGEPSIY_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;ENSG00000197721|ENST00000508064|CR1L;nc|ENSG00000197721|Q2VPA4-3|CR1L	nc|ENSG00000203710|P17927|CR1;ENSG00000197721|ENST00000508064|CR1L	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2940063476562	2	577.292422	1152.57029	0.56896	0.00032846	2.2654	0.0013078	2.8344	0.0016363	577.2934587649324	82.967	3.0817	82.747	81.701	84.783	-0.22015					149	71	3	0	0	0	0.67706	1	10011	10011		68.787	10.005	1	613750			15519	10274;10039	11018	11038	16818	16818					0.00010886175004998222
FEMCSQLQA	9	Carbamidomethyl (C),Oxidation (M)	_FEM(Oxidation (M))C(Carbamidomethyl (C))SQLQA_	FEMC(1)SQLQA	FEM(1)CSQLQA	FEMC(66)SQLQA	FEM(66)CSQLQA	0	1	1		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.2366333007812	2	565.236267	1128.45798	0.057296	3.2386E-05	-0.63432	-0.00035854	-0.57703	-0.00032616	565.2358939217772	46.036	0.6993	45.939	45.669	46.368	-0.096649					45	18	4	0	0	0	0.39228	1	4411	4411		66.429	7.6473	1	2286600			15520	7968	11019	11039	16819	16819	95	333			-0.1011103416512924
FEMCSQLQA	9	Carbamidomethyl (C),Oxidation (M)	_FEM(Oxidation (M))C(Carbamidomethyl (C))SQLQA_	FEMC(1)SQLQA	FEM(1)CSQLQA	FEMC(82)SQLQA	FEM(82)CSQLQA	0	1	1		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.2369384765625	2	565.236267	1128.45798	-0.83454	-0.00047171	-0.028167	-1.5921E-05	-0.86271	-0.00048764	565.2362868359853	46.152	0.70327	45.95	45.669	46.372	-0.20226					43	18	4	0	0	0	0.2508	1	4417	4417		82.241	7.9855	1	2142500			15521	7968	11019	11039	16820	16820	95	333			-0.1011103416512924
FEMCSQLQA	9	Carbamidomethyl (C),Oxidation (M)	_FEM(Oxidation (M))C(Carbamidomethyl (C))SQLQA_					0	1	1		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.236267	1128.45798	-0.50939	-0.00028793	0.38648	0.00021845	-0.12291	-6.9474E-05	565.2360563898885	45.911	0.37658	45.911	45.714	46.09	0	-0.022766	0.0006446	NaN	82.241	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142940			15522	7968	11019	11039			95	333			-0.1011103416512924
FEMCSQLQA	9	Carbamidomethyl (C),Oxidation (M)	_FEM(Oxidation (M))C(Carbamidomethyl (C))SQLQA_					0	1	1		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.236267	1128.45798	-0.79117	-0.0004472	0.35223	0.00019909	-0.43894	-0.0002481	565.2363436350699	45.846	0.40701	45.89	45.716	46.123	0.043877	-0.043322	0.00060588	NaN	82.241	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260140			15523	7968	11019	11039			95	333			-0.1011103416512924
FENDWMPR	8	Unmodified	_FENDWMPR_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.810791015625	2	547.739834	1093.46511	-0.78137	-0.00042799	2.6681	0.0014614	1.8867	0.0010334	547.7415410308656	46.282	0.61823	46.333	46.031	46.649	0.051395					25	17	2	0	0	0	0.027866	1	4546	4546		33.516	0	1	145920	+		15524	19872	11020	11040	16821	16821					-0.0778793350241358
FENEPIMY	8	Oxidation (M)	_FENEPIM(Oxidation (M))Y_		FENEPIM(1)Y		FENEPIM(91)Y	0	0	1			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7303466796875	2	529.7286	1057.44265	0.36473	0.00019321	2.6226	0.0013892	2.9873	0.0015824	529.7297285115018	50.907	0.80046	50.795	50.488	51.288	-0.11163					53	20	4	0	0	0	0.44658	1	5197	5197		90.777	19.481	1	2703200	+		15525	22833	11021	11041	16822	16822		683			-0.0837757769070322
FENETEHTI	9	Unmodified	_FENETEHTI_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.25341796875	2	560.251286	1118.48802	0.30391	0.00017026	3.3426	0.0018727	3.6465	0.0020429	560.2531768313767	68.104	1.1274	67.87	67.429	68.557	-0.23376					84	27	5	0	0	0	0.12914	1	7871	7871		104.06	6.5841	1	3300800	+		15526	28655	11022	11042	16823	16823					-0.06648635903934519
FENIVAMSEL	10	Unmodified	_FENIVAMSEL_					0	0	0			REV__ENST00000588072.5_1_18:11906296-11908403:-|nuORF	REV__ENST00000588072.5_1_18:11906296-11908403:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7828979492188	2	576.783907	1151.55326	-0.73592	-0.00042447	-2.0573	-0.0011866	-2.7932	-0.0016111	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	0.99657	1	7549	7549		46.457	2.0796	1	1832600	+		15527	35639	11023	11043	16824	16824					-0.01645357702432193
FENLEAKFIG	10	Unmodified	_FENLEAKFIG_					0	0	0			REV__nc|ENSG00000149273|P23396-2|RPS3	REV__nc|ENSG00000149273|P23396-2|RPS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	584.3300170898438	2	584.305864	1166.59717	-0.52143	-0.00030467	3.9382	0.0023011	3.4167	0.0019964	584.3075666777562	59.947	0.67121	60.026	59.721	60.392	0.078888					37	17	3	0	0	0	0.03519	1	6750	6750		49.442	0	1	164750	+		15528	36774	11024	11044	16825	16825					0.020539947861834662
FENVELGVIG	10	Unmodified	_FENVELGVIG_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7832641601562	2	538.784764	1075.55498	-1.7956	-0.00096744	-1.9755	-0.0010644	-3.7711	-0.0020318	538.7835965018162	29.592	0.72627	29.592	29.37	30.096	0					29	17	2	0	0	0	1.0142	1	1836	1836		44.117	0	1	1351100			15529	341	11025	11045	16826	16826					0.020220193778186513
FEPGLSRSIL	10	Unmodified	_FEPGLSRSIL_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2;REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8143310546875	2	559.813856	1117.61316	-0.92953	-0.00052036	3.9468	0.0022095	3.0173	0.0016891	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.71272	1	10201	10201		66.429	0.6261	1	11139000	+		15530	20289;20534	11026	11046	16827	16827					0.05905701023107213
FEPLARREIV	10	Unmodified	_FEPLARREIV_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.572021484375	3	410.571545	1228.69281	4.4081	0.0018099	-3.6148	-0.0014841	0.79333	0.00032572	410.569873603044	17.401	0.34738	17.401	17.25	17.598	0					15	6	3	0	0	0	1.1103	1	170	170		16.007	3.8001	1	54252	+		15531	26775	11027	11047	16828	16828					0.0876076769707197
FEPLPPQYF	9	Unmodified	_FEPLPPQYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.283935546875	2	569.2844	1136.55425	0.34398	0.00019582	-0.97758	-0.00055652	-0.6336	-0.0003607	569.2839725194614	81.437	1.2694	81.208	80.939	82.208	-0.2289					129	29	6	0	0	0	0.06122	5	9787	9787;9811;9823;9836;9875		124.59	12.946	1	48791000			15532	5711	11028	11048	16829;16830;16831;16832;16833	16829					-0.008567752712451693
FEPLPPQYF	9	Unmodified	_FEPLPPQYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2825317382812	2	569.2844	1136.55425	0.34672	0.00019738	-1.1584	-0.00065946	-0.81168	-0.00046208	569.2838656173684	81.384	1.3057	81.191	80.882	82.188	-0.19333					131	30	6	0	0	0	0.17455	1	9831	9831		94.006	6.2521	1	46313000			15533	5711	11028	11048	16834	16834					-0.008567752712451693
FEPLPPQYF	9	Unmodified	_FEPLPPQYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2826538085938	2	569.2844	1136.55425	-0.40444	-0.00023024	-0.38013	-0.0002164	-0.78457	-0.00044665	569.2842976893792	81.356	1.3137	81.213	80.9	82.214	-0.14249					127	30	6	0	0	0	0.25032	1	9792	9792		82.305	5.5309	1	45490000			15534	5711	11028	11048	16835	16835					-0.008567752712451693
FEPWEKGKWH	10	Unmodified	_FEPWEKGKWH_					0	0	0			REV__ENSG00000075035|ENST00000547525|WSCD2	REV__ENSG00000075035|ENST00000547525|WSCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.7635803222656	3	448.555895	1342.64586	-0.098094	-4.4001E-05	1.7892	0.00080256	1.6911	0.00075856	448.5568536246458	30.632	0.54416	30.483	30.14	30.684	-0.14952					21	12	3	0	0	0	0.03519	1	1921	1921		37.508	15.728	1	93587	+		15535	20537	11029	11049	16836	16836					-0.011760918540630882
FEQMHPQT	8	Unmodified	_FEQMHPQT_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2796936035156	2	509.226559	1016.43857	-0.085652	-4.3616E-05	0.86247	0.00043919	0.77682	0.00039558	509.22669908213163	24.432	0.33739	24.217	23.999	24.336	-0.2151					14	7	3	0	0	0	0.027866	1	1046	1046		17.365	3.9109	1	64934	+		15536	22341	11030	11050	16837	16837					-0.06899622393746085
FEQYEPNPP	9	Unmodified	_FEQYEPNPP_					0	0	0			REV__nc|ENSG00000159899|P20594-2|NPR2	REV__nc|ENSG00000159899|P20594-2|NPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8252563476562	2	560.750921	1119.48729	-0.68945	-0.00038661	-3.8195	-0.0021418	-4.5089	-0.0025284	560.7487012340165	30.701	0.62601	30.71	30.455	31.081	0.0086689					21	14	2	0	0	0	0.02435	1	1976	1976		51.335	8.861	1	109570	+		15537	25280	11031	11051	16838	16838					-0.06767430553009035
FEQYPQIVE	9	Unmodified	_FEQYPQIVE_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.240966796875	2	576.782222	1151.54989	-0.22296	-0.0001286	-0.11397	-6.5734E-05	-0.33692	-0.00019433	576.7822012223311	68.521	1.0611	68.259	67.814	68.875	-0.26166					44	25	3	0	0	0	0.024447	1	7958	7958		32.812	0.85756	1	476800	+		15538	26292	11032	11052	16839	16839					-0.019822844848022214
FEQYPQIVE	9	Unmodified	_FEQYPQIVE_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.782222	1151.54989	-0.94914	-0.00054745	-0.074613	-4.3036E-05	-1.0238	-0.00059048	576.7822943665191	68.106	0.65382	68.106	67.947	68.6	0	-0.11104	0.00025097	NaN	25.574	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288300	+		15539	26292	11032	11052							-0.019822844848022214
FEQYPQIVE	9	Unmodified	_FEQYPQIVE_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	576.782222	1151.54989	0.038589	2.2257E-05	-0.99904	-0.00057623	-0.96045	-0.00055397	576.7817906906639	68.543	0.54376	68.25	68.013	68.556	-0.29267	0.03358	-0.00081541	NaN	25.574	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216970	+		15540	26292	11032	11052							-0.019822844848022214
FEQYPQIVE	9	Unmodified	_FEQYPQIVE_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.782222	1151.54989	-0.036832	-2.1244E-05	-1.7855	-0.0010299	-1.8224	-0.0010511	576.7819145284392	68.213	0.56923	68.232	67.93	68.499	0.018913	0.015091	-0.0017227	NaN	25.574	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299110	+		15541	26292	11032	11052							-0.019822844848022214
FERRRQSH	8	Unmodified	_FERRRQSH_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.29345703125	2	558.294488	1114.57442	-0.17338	-9.6797E-05	-1.5837	-0.0008842	-1.7571	-0.00098099	558.2935119169247	26.467	0.91007	26.467	26.124	27.034	0					70	21	5	0	0	0	0.74904	1	1371	1371		63.306	4.5243	1	3011300	+		15542	28013	11033	11053	16840	16840					0.021718332319551337
FERVFQPDL	9	Unmodified	_FERVFQPDL_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.8427734375	2	575.798206	1149.58186	-0.82638	-0.00047583	3.8533	0.0022187	3.0269	0.0017429	575.8005625418408	89.176	1.7294	89.176	88.044	89.774	0					59	40	2	0	0	0	0.021219	1	11214	11214		101.25	41.134	1	100540	+		15543	20521	11034	11054	16841	16841					0.013051279890078149
FERYIRSI	8	Unmodified	_FERYIRSI_					0	0	0			REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|34|2|sense	REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|34|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7592163085938	2	542.300916	1082.58728	-1.1663	-0.00063249	-3.3348	-0.0018085	-4.5011	-0.002441	542.2970541497629	41.466	0.53172	41.236	41.119	41.651	-0.2303					27	13	3	0	0	0	0.027866	1	3641	3641		27.882	3.6795	1	175250	+		15544	36249	11035	11055	16842	16842					0.04928851571457926
FETCSTPFF	9	Unmodified	_FETCSTPFF_					0	0	0			REV__ENST00000533677.1_1_11:117031862-117031970:+|nuORF	REV__ENST00000533677.1_1_11:117031862-117031970:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7636108398438	2	539.731143	1077.44773	-0.96678	-0.0005218	0.66671	0.00035984	-0.30007	-0.00016196	539.732301377546	31.355	0.23818	31.424	31.248	31.486	0.068962					9	5	2	0	0	0	0.024354	1	2033	2033		47.916	0	1	49675	+		15545	34615	11036	11056	16843	16843					-0.08789273828074329
FETSSLIGH	9	Unmodified	_FETSSLIGH_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2;nc|ENSG00000119402|Q9UKT8-2|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.30059814453125	2	495.748182	989.481811	-0.71423	-0.00035408	2.9838	0.0014792	2.2696	0.0011251	495.7498264238374	64.801	0.43575	64.567	64.413	64.849	-0.2345					16	10	2	0	0	0	0.024381	1	7361	7361		29.15	12.676	1	130620			15546	3734	11037	11057	16844	16844					-0.013351093448022766
FETVAECRVL	10	Unmodified	_FETVAECRVL_					0	0	0		ENST00000556754.1_1_14:20943209-20944757:+|nuORF;ENST00000554056.5_1_14:20942916-20944757:+|nuORF;ENSG00000198805|ENST00000361505|PNP	ENST00000556754.1_1_14:20943209-20944757:+|nuORF	ENST00000556754.1_1_14:20943209-20944757:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2930297851562	2	583.797349	1165.58014	-0.42592	-0.00024865	-1.1141	-0.00065043	-1.5401	-0.00089908	583.796335665073	64.202	0.32237	63.974	63.782	64.104	-0.22774					10	7	2	0	0	0	0.03519	1	7259	7259		34.173	0	1	204840			15547	10207	11038	11058	16845	16845					0.003977509087235376
FEVALGAH	8	Unmodified	_FEVALGAH_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.72802734375	2	422.221603	842.428653	-0.79162	-0.00033424	-1.9881	-0.00083941	-2.7797	-0.0011737	422.2206276793217	25.53	0.49616	25.496	25.313	25.809	-0.034395					17	11	2	0	0	0	0.027866	1	1202	1202		15.636	0	1	128860			15548	8772	11039	11059	16846	16846					0.001135576631781987
FEVFRRVF	8	Unmodified	_FEVFRRVF_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.3057250976562	2	550.306001	1098.59745	1.4238	0.00078355	-1.8933	-0.0010419	-0.46949	-0.00025836	550.3047371925553	16.582	0.27276	16.429	16.294	16.567	-0.15376					15	7	3	0	0	0	0.93274	1	83	83		47.916	1.9434	1	64510			15549	3667	11040	11060	16847	16847					0.052094592967023345
FEVGAAALLW	10	Unmodified	_FEVGAAALLW_					0	0	0			REV__ENSG00000244067|ENST00000493422|GSTA2	REV__ENSG00000244067|ENST00000493422|GSTA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7432250976562	2	538.792392	1075.57023	-0.37051	-0.00019963	-4.4234	-0.0023833	-4.7939	-0.0025829	538.7903077888266	61.532	0.62038	61.318	61.042	61.662	-0.21375					19	12	2	0	0	0	0.03519	1	6867	6867		38.806	0	1	318120	+		15550	26837	11041	11061	16848	16848					0.035469309656718906
FEVIIRYSP	9	Unmodified	_FEVIIRYSP_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3088989257812	2	562.310949	1122.60735	-0.60248	-0.00033878	-3.1964	-0.0017974	-3.7988	-0.0021361	562.3093187449479	69.113	1.6808	69.128	68.234	69.914	0.015129					111	43	4	0	0	0	0.32811	1	8238	8238		71.877	0	1	5939300			15551	5030	11042	11062	16849	16849					0.05094602511417179
FEVLWFLT	8	Unmodified	_FEVLWFLT_					0	0	0			REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|83	REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|83	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.766845703125	2	527.784036	1053.55352	-0.36427	-0.00019226	0.6131	0.00032358	0.24883	0.00013133	528.2852155019108	67.768	0.3429	67.768	67.644	67.987	0					9	8	2	0	0	0	0.027866	1	8101	8101		40.573	0	1	390130	+		15552	19403	11043	11063	16850	16850					0.028884300797017204
FEVVIQYGL	9	Unmodified	_FEVVIQYGL_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.8126220703125	2	534.292225	1066.5699	-0.71422	-0.0003816	-2.5225	-0.0013478	-3.2367	-0.0017294	534.2902156291959	103.66	0.41503	103.53	103.33	103.75	-0.12783					16	9	2	0	0	0	0.024541	1	12929	12929		23.042	6.3375	1	106030			15553	3974	11044	11064	16851	16851					0.039275112458199146
FEVVWAAIKPG	11	Unmodified	_FEVVWAAIKPG_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.8368530273438	2	608.839874	1215.66519	-0.99217	-0.00060407	-3.7189	-0.0022642	-4.7111	-0.0028683	608.8374589612363	109.83	0.74304	109.7	109.51	110.25	-0.12524					78	33	4	0	0	0	1.0651	1	13517	13517		20.947	0.95016	1	5435400			15554	6028	11045	11065	16852	16852					0.06598864436818985
FEVWGETYD	9	Unmodified	_FEVWGETYD_					0	0	0			REV__ENSG00000146109|ENST00000274849|ABT1	REV__ENSG00000146109|ENST00000274849|ABT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2877197265625	2	573.242929	1144.47131	-0.42749	-0.00024506	4.3569	0.0024976	3.9294	0.0022525	573.2451784406667	65.023	0.4851	64.788	64.607	65.092	-0.2345					15	11	2	0	0	0	0.024523	1	7453	7453		37.159	14.117	1	61744	+		15555	24461	11046	11066	16853	16853					-0.0951513678990068
FEWKENYPLQT	11	Unmodified	_FEWKENYPLQT_					0	0	0			REV__ENSG00000182578|ENST00000675795|CSF1R	REV__ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.28076171875	3	485.56987	1453.68778	-0.22154	-0.00010757	-4.2851	-0.0020807	-4.5067	-0.0021883	485.9022386856792	25.87	0.18994	25.699	25.581	25.771	-0.17078					6	4	2	0	0	0	0.024812	1	1255	1255		24.276	15.064	1	44477	+		15556	27492	11047	11067	16854	16854					-0.020915809561984133
FEWKMQVY	8	Unmodified	_FEWKMQVY_					0	0	0			REV__ANKRD13A|p.K290Dfs*51|1|0.19|ENSG00000076513|chr12:110025807-110025813|AAAAAAG/-|frameshift_variant	REV__ANKRD13A|p.K290Dfs*51|1|0.19|ENSG00000076513|chr12:110025807-110025813|AAAAAAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.771484375	2	565.770603	1129.52665	-0.68748	-0.00038896	2.4216	0.0013701	1.7341	0.00098111	565.7717615745074	44.715	0.91286	44.467	44.148	45.06	-0.24733					77	23	5	0	0	0	0.75307	1	4179	4179		62.978	0.87101	1	4249300	+		15557	19139	11048	11068	16855	16855					-0.032930018031038344
FEWYRHNVI	9	Unmodified	_FEWYRHNVI_					0	0	0			REV__ENST00000452841.1_1_13:19467552-19468185:-|nuORF	REV__ENST00000452841.1_1_13:19467552-19468185:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.51318359375	3	421.88049	1262.61964	-0.086602	-3.6536E-05	1.8993	0.00080126	1.8127	0.00076473	421.88150561337903	31.453	0.4379	31.522	31.248	31.686	0.06896					17	10	2	0	0	0	0.024541	1	2052	2052		25.574	3.0125	1	62383			15558	32740	11049	11069	16856	16856					-0.001163610255389358
FEYSRVVQ	8	Unmodified	_FEYSRVVQ_					0	0	0		ENST00000400930.8_1_1:1200174-1203277:-|nuORF	ENST00000400930.8_1_1:1200174-1203277:-|nuORF	ENST00000400930.8_1_1:1200174-1203277:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.2650146484375	2	514.263999	1026.51345	-0.56814	-0.00029217	3.4473	0.0017728	2.8792	0.0014807	514.2656475407972	66.776	0.61293	66.776	66.552	67.165	0					27	14	2	0	0	0	0.97924	1	7952	7952		40.573	5.3719	1	1755100			15559	13662	11050	11070	16857	16857					0.0012488340912568674
FEYVAKLQ	8	Unmodified	_FEYVAKLQ_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7900390625	2	499.271293	996.528032	-0.60717	-0.00030314	-2.4404	-0.0012184	-3.0476	-0.0015216	499.26911250067036	29.556	0.43182	29.559	29.24	29.672	0.0031376					14	10	2	0	0	0	0.027866	1	1817	1817		38.806	0	1	58777	+		15560	20899	11051	11071	16858	16858					0.029629555572796562
FFAGAGHHAAM	11	Oxidation (M)	_FFAGAGHHAAM(Oxidation (M))_		FFAGAGHHAAM(1)		FFAGAGHHAAM(60)	0	0	1			REV__ENSG00000152977|ENST00000282928|ZIC1	REV__ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.7559204101562	2	566.753276	1131.492	1.2443	0.00070523	3.9154	0.0022191	5.1597	0.0029243	566.755330254316	19.818	2.1544	19.884	19.242	21.396	0.066195					101	43	3	0	0	0	0.75705	1	458	458		60.294	16.177	1	247290	+		15561	24873	11052	11072	16859	16859		737			-0.06848824891221739
FFAKLSILF	9	Unmodified	_FFAKLSILF_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|52	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|52	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.302978515625	2	543.323328	1084.6321	-1.251	-0.00067969	-1.5339	-0.00083338	-2.7848	-0.0015131	543.3218746215616	74.19	0.72899	74.2	73.793	74.522	0.0096512					22	16	2	0	0	0	0.021088	1	9035	9035		90.777	0	1	134650	+		15562	19458	11053	11073	16860	16860					0.09317282384790815
FFAQIKVI	8	Unmodified	_FFAQIKVI_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2685546875	2	483.294571	964.574589	-0.13917	-6.7258E-05	2.003	0.00096805	1.8639	0.0009008	483.29472876901986	46.672	0.21979	46.409	46.348	46.568	-0.26255					6	5	2	0	0	0	0.027866	1	4503	4503		21.702	8.7432	1	161080	+		15563	27618	11054	11074	16861	16861					0.09088440179243662
FFCIGFII	8	Unmodified	_FFCIGFII_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.8152160644531	2	480.2566	958.498647	-0.058144	-2.7924E-05	-1.8536	-0.0008902	-1.9117	-0.00091812	480.25572729450994	53.679	0.6196	53.481	53.238	53.857	-0.19739					35	18	3	0	0	0	0.027866	1	5645	5645		33.493	16.788	1	1768200	+		15564	22204	11055	11075	16862	16862					0.01773720007463453
FFDASPHSV	9	Unmodified	_FFDASPHSV_					0	0	0			REV__ENSG00000174125|ENST00000308979|TLR1	REV__ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.793212890625	2	503.735074	1005.4556	-0.62998	-0.00031735	-3.4139	-0.0017197	-4.0438	-0.002037	504.23586675089734	64.333	0.58968	64.077	63.836	64.426	-0.25562					24	14	2	0	0	0	0.024457	1	7282	7282		29.15	7.1897	1	145550	+		15565	26834	11056	11076	16863	16863					-0.04691378516281475
FFFAMVHV	8	Unmodified	_FFFAMVHV_					0	0	0		nc|ENSG00000157214|Q8NFT2-3|STEAP2;nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2	nc|ENSG00000157214|Q8NFT2-3|STEAP2	nc|ENSG00000157214|Q8NFT2-3|STEAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3182373046875	2	499.251849	996.489145	0.6371	0.00031807	1.8551	0.00092616	2.4922	0.0012442	499.25262774587287	95.543	1.5692	95.546	95.138	96.707	0.0020752					46	36	2	0	0	0	0.027866	1	12248	12248		33.493	14.133	1	249540			15566	6585	11057	11077	16864	16864					-0.00924048278079681
FFFFLVLGG	9	Unmodified	_FFFFLVLGG_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2723999023438	2	523.789121	1045.56369	0.3917	0.00020517	-3.3224	-0.0017403	-2.9307	-0.0015351	523.784797276048	62.803	0.37426	62.858	62.679	63.054	0.054104					14	8	2	0	0	0	0.024475	1	7214	7214		39.021	26.21	1	92388	+		15567	20056	11058	11078	16865	16865					0.04273037804955493
FFFFVFVL	8	Unmodified	_FFFFVFVL_					0	0	0			REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.293212890625	2	533.29404	1064.57353	-0.59478	-0.00031719	-0.65227	-0.00034785	-1.247	-0.00066504	533.2935839798809	24.626	0.56864	24.452	24.252	24.821	-0.17484					36	12	5	0	0	0	1.0574	1	1104	1104		24.504	0.30126	1	1079400	+		15568	34464	11059	11079	16866	16866					0.043822258103318745
FFFGLYLIV	9	Unmodified	_FFFGLYLIV_					0	0	0			REV__ENST00000328914.4_1_7:4809459-4809543:+|nuORF	REV__ENST00000328914.4_1_7:4809459-4809543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8154907226562	2	559.817879	1117.6212	-0.40949	-0.00022924	-3.8361	-0.0021475	-4.2456	-0.0023768	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.65391	1	9702	9702		49.211	0	1	31806000	+		15569	30438	11060	11080	16867	16867					0.06709880010498637
FFFLLVTQ	8	Unmodified	_FFFLLVTQ_					0	0	0			REV__ENST00000318522.9_1_2:42557683-42557836:+|nuORF	REV__ENST00000318522.9_1_2:42557683-42557836:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.310546875	2	507.786579	1013.5586	-0.59734	-0.00030332	2.1691	0.0011014	1.5718	0.00079813	507.78799888627555	31.589	0.38806	31.436	31.269	31.657	-0.15231					16	9	2	0	0	0	0.027866	1	2118	2118		25.45	8.0852	1	94814	+		15570	30309	11061	11081	16868	16868					0.052367339423540216
FFFQVPCGQ	9	Unmodified	_FFFQVPCGQ_					0	0	0		ENST00000375661.5_1_6:31773857-31774592:-|nuORF	ENST00000375661.5_1_6:31773857-31774592:-|nuORF	ENST00000375661.5_1_6:31773857-31774592:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7850341796875	2	536.74967	1071.48479	-1.7947	-0.00096329	-1.8986	-0.0010191	-3.6932	-0.0019823	536.7485675585351	56.025	0.55014	55.809	55.528	56.078	-0.21551					25	14	2	0	0	0	0.024405	1	6021	6021		35.618	22.164	1	761270			15571	13166	11062	11082	16869	16869					-0.04809557491648775
FFFVFFFLP	9	Unmodified	_FFFVFFFLP_					0	0	0		ENST00000233813.4_1_2:217540303-217540537:-|nuORF	ENST00000233813.4_1_2:217540303-217540537:-|nuORF	ENST00000233813.4_1_2:217540303-217540537:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.57208251953125	3	404.21604	1209.62629	-1.2904	-0.00052162	3.1818	0.0012861	1.8913	0.00076451	404.21662734652523	21.109	0.14854	20.897	20.822	20.971	-0.2128					4	2	2	0	0	0	0.024523	1	601	601		15.642	0	1	4874.9			15572	11246	11063	11083	16870	16870					0.029861838731449097
FFGLKWLIAV	10	Unmodified	_FFGLKWLIAV_					0	0	0			REV__ENSG00000164171|ENST00000296585|ITGA2	REV__ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.3589477539062	2	597.357702	1192.70085	-0.42326	-0.00025283	2.024	0.001209	1.6007	0.00095621	597.3586803270889	98.534	1.7211	98.544	98.105	99.827	0.010239					111	39	4	0	0	0	1.1259	1	12556	12556		24.203	0.68005	1	2936700	+		15573	25711	11064	11084	16871	16871					0.11220946684511546
FFIFLIKIS	9	Unmodified	_FFIFLIKIS_					0	0	0		ENST00000274071.6_1_4:157683628-157683685:-|nuORF	ENST00000274071.6_1_4:157683628-157683685:-|nuORF	ENST00000274071.6_1_4:157683628-157683685:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2588500976562	2	564.346803	1126.67905	-0.32983	-0.00018614	2.8427	0.0016043	2.5129	0.0014181	564.3482840632186	27.401	0.54646	27.244	27.018	27.564	-0.15664					25	12	3	0	0	0	0.024405	1	1455	1455		35.618	5.1146	1	247820			15574	11677	11065	11085	16872	16872					0.12078141935944586
FFKANHCMC	9	Unmodified	_FFKANHCMC_					0	0	0		ENST00000367142.4_1_1:205687117-205687288:-|nuORF	ENST00000367142.4_1_1:205687117-205687288:-|nuORF	ENST00000367142.4_1_1:205687117-205687288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8102416992188	2	550.727358	1099.44016	-0.91335	-0.00050301	-4.0748	-0.0022441	-4.9882	-0.0027471	550.7252067911883	61.031	0.38677	60.777	60.544	60.931	-0.25374					13	9	2	0	0	0	0.024487	1	6789	6789		40.573	10.069	1	131450			15575	12845	11066	11086	16873	16873					-0.10558027900992784
FFKEEKNTL	9	Unmodified	_FFKEEKNTL_					0	0	0		ENST00000245479.2_1_17:70121293-70121485:+|nuORF	ENST00000245479.2_1_17:70121293-70121485:+|nuORF	ENST00000245479.2_1_17:70121293-70121485:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.30517578125	2	578.305864	1154.59717	-0.14427	-8.3432E-05	-0.098202	-5.6791E-05	-0.24247	-0.00014022	578.3056282275285	41.889	1.303	41.766	41.421	42.724	-0.12299					105	34	5	0	0	0	0.053401	2	3727	3727;3739		127.46	20.454	1	4336100			15576	11313	11067	11087	16874;16875	16874					0.02605994786199517
FFKFLAWI	8	Unmodified	_FFKFLAWI_					0	0	0		SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant;ENSG00000014824|ENST00000264451|SLC30A9	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7855224609375	2	536.304939	1070.59532	-1.569	-0.00084147	-3.0905	-0.0016574	-4.6595	-0.0024989	536.8028867693176	55.356	0.7486	55.454	55.183	55.931	0.098015					31	19	2	0	0	0	0.027866	1	6042	6042		29.842	14.2	1	508380			15577	925	11068	11088	16876	16876					0.06285030558888138
FFKFYTCN	8	Unmodified	_FFKFYTCN_					0	0	0			REV__ENSG00000130433|ENST00000252729|CACNG6	REV__ENSG00000130433|ENST00000252729|CACNG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7848510742188	2	535.244221	1068.47389	-0.68609	-0.00036723	0.17711	9.4799E-05	-0.50898	-0.00027243	535.2442906995904	55.976	1.0578	55.82	55.591	56.649	-0.15602					37	28	2	0	0	0	0.027866	1	6163	6163		40.573	8.6178	1	182630	+		15578	23113	11069	11089	16877	16877					-0.057609598659382755
FFKFYTCN	8	Unmodified	_FFKFYTCN_					0	0	0			REV__ENSG00000130433|ENST00000252729|CACNG6	REV__ENSG00000130433|ENST00000252729|CACNG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.784912109375	2	535.244221	1068.47389	-1.3573	-0.00072648	0.91376	0.00048909	-0.44353	-0.0002374	535.2444639052902	55.77	1.1348	55.868	55.148	56.283	0.098015					40	30	2	0	0	0	0.027866	1	6064	6064		54.765	24.261	1	213560	+		15579	23113	11069	11089	16878	16878					-0.057609598659382755
FFKTKTFLP	9	Unmodified	_FFKTKTFLP_					0	0	0		ENST00000519132.5_1_5:178030620-178030809:-|nuORF	ENST00000519132.5_1_5:178030620-178030809:-|nuORF	ENST00000519132.5_1_5:178030620-178030809:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.8235473632812	2	564.826235	1127.63792	0.38099	0.00021519	-3.5327	-0.0019953	-3.1517	-0.0017802	564.8240828814527	102.12	0.99087	101.99	101.5	102.49	-0.12931					55	23	4	0	0	0	0.85329	1	12698	12698		35.618	1.4457	1	129430			15580	15945	11070	11090	16879	16879					0.0792038089646212
FFLALTSTAL	10	Unmodified	_FFLALTSTAL_					0	0	0		ENSG00000049249|ENST00000377507|TNFRSF9	ENSG00000049249|ENST00000377507|TNFRSF9	ENSG00000049249|ENST00000377507|TNFRSF9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.3076782226562	2	542.307875	1082.6012	-0.58084	-0.00031499	0.085581	4.6411E-05	-0.49525	-0.00026858	542.3075712080368	72.885	1.2291	72.894	72.25	73.479	0.0096512					73	30	5	0	0	0	0.91051	1	8820	8820		53.351	5.6941	1	1661200			15581	1127	11071	11091	16880	16880					0.06320084279900584
FFLAWLVK	8	Unmodified	_FFLAWLVK_					0	0	0		NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;ENSG00000102452|ENST00000251127|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF	NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant;ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7713012695312	2	512.304939	1022.59532	0.99931	0.00051195	2.34	0.0011988	3.3394	0.0017108	512.3059315332515	20.07	0.4314	19.87	19.653	20.084	-0.2001					18	8	3	0	0	0	0.027866	1	467	467		19.36	11.67	1	212240			15582	2409;18020	11072	11092	16881	16881					0.08493030558906867
FFLLDEISL	9	Unmodified	_FFLLDEISL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.275634765625	2	548.799883	1095.58521	-0.6264	-0.00034377	-4.1615	-0.0022838	-4.7879	-0.0026276	548.796208412667	46.895	0.23952	46.742	46.659	46.899	-0.15301					6	5	2	0	0	0	0.024354	1	4642	4642		57.811	7.7867	1	54255			15583	3177	11073	11093	16882	16882					0.041243780430022525
FFLLFQSIIN	10	Unmodified	_FFLLFQSIIN_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3505859375	2	621.350074	1240.6856	-1.0889	-0.0006766	0.98755	0.00061362	-0.10136	-6.298E-05	621.3504396083733	102.94	0.41422	102.81	102.63	103.05	-0.12783					24	9	3	0	0	0	1.1165	1	12831	12831		26.693	7.5894	1	2566500	+		15584	26502	11074	11094	16883	16883					0.07488035096662315
FFLLICVLI	9	Unmodified	_FFLLICVLI_					0	0	0			REV__ENST00000544665.7_1_16:31343862-31344042:+|nuORF	REV__ENST00000544665.7_1_16:31343862-31344042:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.8102416992188	2	540.829932	1079.64531	-1.5338	-0.00082955	-2.5121	-0.0013586	-4.0459	-0.0021882	540.827989869754	107.09	0.12522	106.95	106.92	107.04	-0.1346					5	3	2	0	0	0	0.024475	1	13308	13308		39.021	3.4032	1	20744	+		15585	34811	11075	11095	16884	16884					0.10867397172546589
FFLLLPLPK	9	Unmodified	_FFLLLPLPK_					0	0	0			REV__ENSG00000162994|ENST00000401408|CLHC1	REV__ENSG00000162994|ENST00000401408|CLHC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.346923828125	2	544.349346	1086.68414	-0.19366	-0.00010542	-3.6367	-0.0019796	-3.8304	-0.0020851	544.3472627637021	78.747	1.3535	78.492	78.127	79.48	-0.25471					71	31	4	0	0	0	0.52323	1	9386	9386		57.811	2.3071	1	3048000	+		15586	25517	11076	11096	16885	16885					0.14426445798562781
FFLLLPLPK	9	Unmodified	_FFLLLPLPK_					0	0	0			REV__ENSG00000162994|ENST00000401408|CLHC1	REV__ENSG00000162994|ENST00000401408|CLHC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3470458984375	2	544.349346	1086.68414	0.035767	1.947E-05	-3.8672	-0.0021051	-3.8315	-0.0020857	544.3471106564123	78.67	1.2238	78.439	78.091	79.315	-0.23141					76	28	5	0	0	0	0.83071	1	9420	9420		37.159	9.2769	1	2889500	+		15587	25517	11076	11096	16886	16886					0.14426445798562781
FFLLPNSII	9	Unmodified	_FFLLPNSII_					0	0	0		ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	ENSG00000204020|ENST00000404459|LIPN	MSMS	OPSCC_40_ClassI_Rep-1	4	532.3111572265625	2	532.312961	1062.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.232	1	69.965	69.465	70.465	-0.26725								0	0	0	0.52604	1	8165	8165		49.442	1.7842	1				15588	10293	11077	11097	16887	16887					0.08256692005124933
FFLPGIVEP	9	Unmodified	_FFLPGIVEP_					0	0	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.25042724609375	2	509.784036	1017.55352	-0.41021	-0.00020912	0.74114	0.00037782	0.33093	0.0001687	509.7848334667839	52.613	0.35643	52.354	52.287	52.644	-0.25839					16	8	3	0	0	0	0.024354	1	5478	5478		47.916	16.386	1	247860	+		15589	21141	11078	11098	16888	16888					0.04544430079704398
FFLPGIVEP	9	Unmodified	_FFLPGIVEP_					0	0	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.784036	1017.55352	-0.4117	-0.00020988	0.11743	5.9863E-05	-0.29427	-0.00015001	509.78403608544977	52.33	0.4352	52.33	52.16	52.595	0	0.02569	0.00014326	NaN	47.916	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	561570	+		15590	21141	11078	11098							0.04544430079704398
FFLPGIVEP	9	Unmodified	_FFLPGIVEP_					0	0	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.784036	1017.55352	0.14443	7.363E-05	-0.50918	-0.00025957	-0.36475	-0.00018594	509.7836937745692	52.375	0.688	52.228	51.881	52.569	-0.14735	-0.076055	-0.00049561	NaN	47.916	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520510	+		15591	21141	11078	11098							0.04544430079704398
FFLQLPPH	8	Unmodified	_FFLQLPPH_					0	0	0			REV__ENSG00000047578|ENST00000261588|KATNIP	REV__ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3182373046875	2	499.776545	997.538538	1.1243	0.0005619	3.1402	0.0015694	4.2645	0.0021313	499.77847336976265	96.292	0.5472	96.294	96.115	96.662	0.0020752					18	12	2	0	0	0	0.027866	1	12248	12248		24.504	15.682	1	113620	+		15592	20127	11079	11099	16889	16889					0.03966983002374036
FFLREASSL	9	Unmodified	_FFLREASSL_					0	0	0		MLT2C1_dup2391|chr19:43794789-43795170:-|1.1304770532666923|0.2395024624305904|2.24|522.0|17|1|anti-sense	MLT2C1_dup2391|chr19:43794789-43795170:-|1.1304770532666923|0.2395024624305904|2.24|522.0|17|1|anti-sense	MLT2C1_dup2391|chr19:43794789-43795170:-|1.1304770532666923|0.2395024624305904|2.24|522.0|17|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7548828125	2	535.287474	1068.5604	-0.69601	-0.00037256	1.2922	0.00069169	0.59619	0.00031913	535.2877512375483	56.23	0.47922	56.073	55.894	56.373	-0.15656					17	11	2	0	0	0	0.024427	1	6119	6119		26.693	0	1	519810			15593	17987	11080	11100	16890	16890					0.028857429602794582
FFLYVYVT	8	Unmodified	_FFLYVYVT_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7241821289062	2	526.278586	1050.54262	-0.96974	-0.00051035	-0.083974	-4.4194E-05	-1.0537	-0.00055454	526.2783343410614	89.988	1.0811	89.825	89.012	90.093	-0.16261					52	25	3	0	0	0	0.027866	1	10899	10899		46.766	9.6073	1	82610			15594	1538	11081	11101	16891	16891					0.01937027705434957
FFLYVYVT	8	Unmodified	_FFLYVYVT_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.278586	1050.54262	0.29761	0.00015662	-1.1461	-0.00060317	-0.84851	-0.00044655	526.2782150525461	90.133	0.49112	89.995	89.705	90.196	-0.13825	0.084846	-0.00075059	NaN	46.766	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62030			15595	1538	11081	11101							0.01937027705434957
FFNHGEVTRVM	11	Unmodified	_FFNHGEVTRVM_					0	0	0		ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	446.218994140625	3	446.220407	1335.63939	-0.17771	-7.93E-05	-2.953	-0.0013177	-3.1307	-0.001397	446.2188912662399	66.201	0.70942	65.959	65.665	66.375	-0.24145					54	17	4	0	0	0	0.99129	1	7583	7583		38.754	3.258	1	1242100			15596	13921	11082	11102	16892	16892					-0.015003530770854923
FFNHGEVTRVM	11	Unmodified	_FFNHGEVTRVM_					0	0	0		ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	446.220407	1335.63939	0.082532	3.6828E-05	-3.1003	-0.0013834	-3.0177	-0.0013466	446.2188497171053	66.209	0.34605	65.928	65.788	66.134	-0.28148	-0.033323	-5.9177E-05	NaN	38.754	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134200			15597	13921	11082	11102							-0.015003530770854923
FFNHGEVTRVM	11	Unmodified	_FFNHGEVTRVM_					0	0	0		ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	446.220407	1335.63939	-0.10961	-4.8912E-05	-3.2066	-0.0014308	-3.3162	-0.0014798	446.2188564383225	66.018	0.38495	66.049	65.812	66.197	0.030106	0.087183	-0.0002015	NaN	38.754	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228490			15598	13921	11082	11102							-0.015003530770854923
FFNHGEVTRVM	11	Unmodified	_FFNHGEVTRVM_					0	0	0		ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	ENST00000417811.2_3_7:32718693-32763129:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	446.220407	1335.63939	-0.29088	-0.0001298	-3.0612	-0.001366	-3.3521	-0.0014958	446.2189139034139	66.16	0.73562	65.91	65.645	66.38	-0.25038	-0.05176	-6.8751E-06	NaN	38.754	51	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167700			15599	13921	11082	11102							-0.015003530770854923
FFNLAVLST	9	Unmodified	_FFNLAVLST_					0	0	0		ENSG00000163472|ENST00000405535|TMEM79	ENSG00000163472|ENST00000405535|TMEM79	ENSG00000163472|ENST00000405535|TMEM79	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2773132324219	2	506.279118	1010.54368	-0.19141	-9.6909E-05	-4.2821	-0.0021679	-4.4735	-0.0022648	506.27691475401133	54.813	0.97548	54.582	54.28	55.255	-0.23087					73	27	4	0	0	0	0.43973	1	5869	5869		63.306	2.3343	1	9503200			15600	7083	11083	11103	16893	16893					0.03883242074334703
FFNRYGEET	9	Unmodified	_FFNRYGEET_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.7801513671875	2	581.76182	1161.50909	-0.67526	-0.00039284	3.1418	0.0018278	2.4665	0.0014349	581.7635585595405	45.252	0.66912	45.153	44.789	45.458	-0.099449					45	18	3	0	0	0	0.024541	1	4229	4229		16.473	9.2798	1	1114300	+		15601	29015	11084	11104	16894	16894					-0.06520625804432711
FFNRYGEET	9	Unmodified	_FFNRYGEET_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	581.76182	1161.50909	-1.6092	-0.00093616	3.6211	0.0021066	2.0119	0.0011705	581.7639797165119	45.152	0.51281	45.152	44.862	45.375	0	0.073949	0.00027497	NaN	53.351	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632260	+		15602	29015	11084	11104							-0.06520625804432711
FFNRYGEET	9	Unmodified	_FFNRYGEET_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	581.76182	1161.50909	-1.4057	-0.00081779	3.975	0.0023125	2.5693	0.0014947	581.7638424506798	45.232	0.64911	45.083	44.697	45.346	-0.1488	0.005396	0.00068673	NaN	53.351	53	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542740	+		15603	29015	11084	11104							-0.06520625804432711
FFNRYGEET	9	Unmodified	_FFNRYGEET_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	581.76182	1161.50909	-0.045061	-2.6215E-05	2.276	0.0013241	2.231	0.0012979	581.7632059488335	45.165	0.7211	45.209	44.756	45.478	0.043877	0.1315	-0.00129	NaN	53.351	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553310	+		15604	29015	11084	11104							-0.06520625804432711
FFPLDFIVQ	9	Unmodified	_FFPLDFIVQ_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2845458984375	2	563.302593	1124.59063	-0.84962	-0.00047859	-2.9538	-0.0016639	-3.8034	-0.0021425	563.3009064605424	83.069	1.2482	83.069	82.793	84.041	0					79	28	4	0	0	0	0.024294	1	10510	10510		45.952	1.8352	1	1040600			15605	3304	11085	11105	16895	16895					0.03332101625460382
FFPLSAKVY	9	Unmodified	_FFPLSAKVY_					0	0	0			REV__ENST00000552572.1_1_12:104388057-104390611:-|nuORF	REV__ENST00000552572.1_1_12:104388057-104390611:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7794189453125	2	536.29731	1070.58007	-0.26809	-0.00014378	-0.97011	-0.00052026	-1.2382	-0.00066404	536.2954995362571	63.363	0.47291	63.139	62.896	63.369	-0.22456					21	11	2	0	0	0	0.024263	1	7177	7177		60.972	9.6365	1	342690	+		15606	34957	11086	11106	16896	16896					0.04760118971034899
FFQVIPIN	8	Unmodified	_FFQVIPIN_					0	0	0			REV__ENST00000467061.1_1_3:185212393-185212549:-|nuORF	REV__ENST00000467061.1_1_3:185212393-185212549:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2850646972656	2	489.276378	976.538203	-0.65354	-0.00031976	-3.8081	-0.0018632	-4.4616	-0.002183	489.2742866046336	54.845	0.38211	54.943	54.733	55.116	0.098015					22	10	3	0	0	0	0.027866	1	5962	5962		33.516	8.0654	1	680500	+		15607	25653	11087	11107	16897	16897					0.04899563282526742
FFRANSPHY	9	Unmodified	_FFRANSPHY_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7738037109375	2	569.775065	1137.53558	0.82125	0.00046793	-1.6438	-0.00093661	-0.82257	-0.00046868	569.7741095752219	77.875	1.7748	77.632	77.32	79.095	-0.24232					78	41	5	0	0	0	0.39228	1	9316	9316		66.429	8.1994	1	9792300	+		15608	21703	11088	11108	16898	16898					-0.02768892122435318
FFSLFVIFN	9	Unmodified	_FFSLFVIFN_					0	0	0			REV__ENSG00000119737|ENST00000394705|GPR75	REV__ENSG00000119737|ENST00000394705|GPR75	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3026123046875	2	567.305136	1132.59572	0.27901	0.00015828	-3.8109	-0.0021619	-3.5319	-0.0020037	567.3029111301737	86.003	0.64748	85.865	85.577	86.224	-0.13734					40	14	4	0	0	0	0.92825	1	10431	10431		30.504	0.18592	1	469780	+		15609	22485	11089	11109	16899	16899					0.034724054881053235
FFSLQLSLF	9	Unmodified	_FFSLQLSLF_					0	0	0			REV__ENST00000481965.6_1_3:122990587-122990722:+|nuORF	REV__ENST00000481965.6_1_3:122990587-122990722:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.270751953125	2	551.302593	1100.59063	-0.46514	-0.00025643	-2.8843	-0.0015901	-3.3495	-0.0018466	551.300607770569	51.433	0.64965	51.157	50.891	51.54	-0.27643					35	16	3	0	0	0	0.023417	1	5237	5237		79.451	10.664	1	718600	+		15610	33472	11090	11110	16900	16900					0.04436101625469746
FFSLQLSLF	9	Unmodified	_FFSLQLSLF_					0	0	0			REV__ENST00000481965.6_1_3:122990587-122990722:+|nuORF	REV__ENST00000481965.6_1_3:122990587-122990722:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.302593	1100.59063	0.02732	1.5062E-05	-4.1761	-0.0023023	-4.1488	-0.0022872	551.3000044897283	51.161	0.72509	51.161	50.81	51.535	0	0.068342	-0.00071052	NaN	79.451	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2677200	+		15611	33472	11090	11110							0.04436101625469746
FFSLQLSLF	9	Unmodified	_FFSLQLSLF_					0	0	0			REV__ENST00000481965.6_1_3:122990587-122990722:+|nuORF	REV__ENST00000481965.6_1_3:122990587-122990722:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.302593	1100.59063	-0.83854	-0.00046229	-3.3115	-0.0018256	-4.1501	-0.0022879	551.300465011117	51.285	1.0519	51.136	50.657	51.709	-0.14916	0.043391	0.00024279	NaN	79.451	62	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3042200	+		15612	33472	11090	11110							0.04436101625469746
FFVDILTLL	9	Unmodified	_FFVDILTLL_					0	0	0		nc|ENSG00000135083|Q8IV13-2|CCNJL;ENST00000377503.6_1_5:159686777-159766528:-|nuORF;nc|ENSG00000135083|Q8IV13|CCNJL;ENSG00000135083|ENST00000257536|CCNJL	nc|ENSG00000135083|Q8IV13-2|CCNJL;nc|ENSG00000135083|Q8IV13|CCNJL	nc|ENSG00000135083|Q8IV13-2|CCNJL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8214111328125	2	540.820618	1079.62668	-0.28344	-0.00015329	0.097182	5.2558E-05	-0.18626	-0.00010073	540.820626521652	105.76	0.87628	105.64	105.44	106.32	-0.12444					59	31	3	0	0	0	0.92825	1	13186	13186		30.504	1.3336	1	286110			15613	13208;4857	11091	11111	16901	16901					0.09005558802346059
FFVFVFVL	8	Unmodified	_FFVFVFVL_					0	0	0		ENST00000228506.7_1_12:121136755-121136905:+|nuORF	REV__ENST00000377126.3_1_9:73002336-73002447:-|nuORF	REV__ENST00000377126.3_1_9:73002336-73002447:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.7806701660156	2	509.29404	1016.57353	-0.79262	-0.00040368	-0.80167	-0.00040828	-1.5943	-0.00081196	509.29344949354413	21.856	0.53005	21.647	21.462	21.992	-0.20934					15	10	2	0	0	0	0.027866	1	677	677		24.504	0	1	81197			15614	11219	11092	11112	16902	16902					0.06590225810339234
FFVILTLSN	9	Unmodified	_FFVILTLSN_					0	0	0		nc|ENSG00000118702|P01286-2|GHRH;ENSG00000118702|ENST00000373614|GHRH	nc|ENSG00000118702|P01286-2|GHRH	nc|ENSG00000118702|P01286-2|GHRH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3048706054688	2	527.302593	1052.59063	0.11826	6.2359E-05	4.3982	0.0023192	4.5165	0.0023816	527.3049169576591	97.891	1.1971	97.902	97.283	98.48	0.010231					72	27	5	0	0	0	0.72875	1	12450	12450		44.117	12.162	1	628790			15615	3699	11093	11113	16903	16903					0.06644101625488474
FFVLIGVKV	9	Unmodified	_FFVLIGVKV_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|208|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|208|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3270568847656	2	511.325871	1020.63719	0.6587	0.00033681	1.792	0.00091628	2.4507	0.0012531	511.32665137980894	96.169	1.2768	96.171	95.739	97.016	0.0020676					65	29	3	0	0	0	0.96855	1	12176	12176		26.796	1.3459	1	1631100	+		15616	36289	11094	11114	16904	16904					0.12769586247441111
FFWYLLQRRFR	11	Unmodified	_FFWYLLQRRFR_					0	0	0			REV__ENSG00000100979|ENST00000372431|PLTP	REV__ENSG00000100979|ENST00000372431|PLTP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.9345397949219	4	408.729398	1630.88849	0.23152	9.4629E-05	-2.9762	-0.0012165	-2.7447	-0.0011218	408.7281340473968	17.297	0.25314	17.09	16.913	17.166	-0.20669					7	4	2	0	0	0	0.024902	1	142	142		3.4087	3.0682	1	23325	+		15617	21168	11095	11115	16905	16905					0.09827777941745808
FFYFYLQTI	9	Unmodified	_FFYFYLQTI_					0	0	0			REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	REV__OR6S1|p.F103L|1|0.2|ENSG00000181803|chr14:20641383-20641383|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.315185546875	2	621.3157	1240.61685	-0.33526	-0.0002083	-3.1732	-0.0019715	-3.5084	-0.0021798	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.50848	1	7683	7683		58.782	2.0609	1	26099000	+		15618	37329	11096	11116	16906	16906					0.006163707969562893
FFYYLLTKI	9	Unmodified	_FFYYLLTKI_					0	0	0			REV__ENST00000312938.4_1_3:101369242-101369323:-|nuORF	REV__ENST00000312938.4_1_3:101369242-101369323:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.1929016113281	3	403.230237	1206.66888	0.22586	9.1074E-05	2.0643	0.0008324	2.2902	0.00092347	403.23091958330497	30.419	1.007	30.24	29.824	30.831	-0.17818					47	23	4	0	0	0	0.024484	1	1921	1921		17.468	0	1	548400	+		15619	30226	11097	11117	16907	16907					0.07381534210685459
FGADCKYKF	9	Unmodified	_FGADCKYKF_					0	0	0		ENSG00000110492|ENST00000395566|MDK	ENSG00000110492|ENST00000395566|MDK	ENSG00000110492|ENST00000395566|MDK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8182373046875	2	539.754953	1077.49535	-0.31324	-0.00016907	0.28789	0.00015539	-0.025353	-1.3684E-05	539.7573921410903	74.454	0.21449	74.271	74.137	74.351	-0.18279					8	4	3	0	0	0	0.024495	1	8774	8774		42.396	19.816	1	65911			15620	3046	11098	11118	16908	16908					-0.04029574837227301
FGAIFVSIVLF	11	Unmodified	_FGAIFVSIVLF_					0	0	0			REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9227294921875	3	404.905754	1211.69543	0.53068	0.00021488	4.4162	0.0017881	4.9469	0.002003	404.9076265664107	26.14	0.11743	25.972	25.87	25.988	-0.16816					6	3	2	0	0	0	0.024727	1	1302	1302		27.047	12.961	1	119240	+		15621	19198	11099	11119	16909	16909					0.0980522310201195
FGALRRGG	8	Unmodified	_FGALRRGG_					0	0	0			REV__ENST00000260970.7_1_2:170440858-170460586:+|nuORF	REV__ENST00000260970.7_1_2:170440858-170460586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.23944091796875	2	417.240661	832.46677	0.69179	0.00028864	-4.1111	-0.0017153	-3.4193	-0.0014267	417.23885776731845	87.824	1.3614	87.789	87.405	88.766	-0.035355					56	32	2	0	0	0	1.0472	1	11032	11032		29.842	0.69198	1	3093200	+		15622	29605	11100	11120	16910	16910					0.04383488368523558
FGALRRGG	8	Unmodified	_FGALRRGG_					0	0	0			REV__ENST00000260970.7_1_2:170440858-170460586:+|nuORF	REV__ENST00000260970.7_1_2:170440858-170460586:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.2392578125	2	417.240661	832.46677	0.27597	0.00011514	-3.8028	-0.0015867	-3.5268	-0.0014715	417.238994678704	87.954	1.3047	87.817	87.388	88.693	-0.13613					49	31	2	0	0	0	1.0572	1	10709	10709		28.254	1.5614	1	2230800	+		15623	29605	11100	11120	16911	16911					0.04383488368523558
FGAMVGVLL	9	Unmodified	_FGAMVGVLL_					0	0	0			REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.75006103515625	2	453.759507	905.50446	-0.52195	-0.00023684	3.4875	0.0015825	2.9656	0.0013457	453.7609498495967	81.468	1.089	81.337	80.975	82.064	-0.13075					48	26	4	0	0	0	0.024475	1	10147	10147		21.702	11.518	1	336420	+		15624	33395	11101	11121	16912	16912					0.04792818519138109
FGAMVGVLL	9	Unmodified	_FGAMVGVLL_					0	0	0			REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	453.759507	905.50446	0.44644	0.00020258	3.0362	0.0013777	3.4826	0.0015803	453.7604782446731	81.354	1.0912	81.126	80.857	81.948	-0.2289	-0.092138	-0.00025237	NaN	39.021	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283280	+		15625	33395	11101	11121							0.04792818519138109
FGAMVGVLL	9	Unmodified	_FGAMVGVLL_					0	0	0			REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	453.759507	905.50446	0.22858	0.00010372	3.1647	0.001436	3.3933	0.0015397	453.76057797215657	81.345	1.328	81.151	80.6	81.928	-0.19334	-0.066385	-0.00013572	NaN	39.021	53	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301880	+		15626	33395	11101	11121							0.04792818519138109
FGAMVGVLL	9	Unmodified	_FGAMVGVLL_					0	0	0			REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	453.759507	905.50446	-0.36627	-0.0001662	3.4634	0.0015716	3.0971	0.0014054	453.76088813421086	81.258	0.96539	81.115	80.817	81.782	-0.14249	-0.10256	0.00013536	NaN	39.021	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357300	+		15627	33395	11101	11121							0.04792818519138109
FGAQLLPPLY	10	Unmodified	_FGAQLLPPLY_					0	0	0		ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7297973632812	2	559.815867	1117.61718	0.77518	0.00043396	-0.84355	-0.00047223	-0.068371	-3.8275E-05	559.815292486523	96.216	1.4703	96.092	95.728	97.198	-0.12305					76	33	4	0	0	0	0.03519	1	11977	11977		24.203	6.8378	1	891900			15628	7153	11102	11122	16913	16913					0.06307790516825662
FGARLKPI	8	Unmodified	_FGARLKPI_					0	0	0			REV__ENSG00000015413|ENST00000690203|DPEP1	REV__ENSG00000015413|ENST00000690203|DPEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2425842285156	2	451.284537	900.554522	-0.30932	-0.00013959	0.11935	5.3859E-05	-0.18998	-8.5734E-05	451.2844938585784	53.738	0.68433	53.54	53.238	53.922	-0.19739					65	20	5	0	0	0	0.027866	1	5658	5658		14.664	0	1	5175900	+		15629	19967	11103	11123	16914	16914					0.10026689239259667
FGDEMPFLS	9	Unmodified	_FGDEMPFLS_					0	0	0			REV__ENSG00000113742|ENST00000265085|CPEB4	REV__ENSG00000113742|ENST00000265085|CPEB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7667846679688	2	521.731143	1041.44773	-0.9553	-0.00049841	-2.6466	-0.0013808	-3.6019	-0.0018792	521.7296697480789	47.909	0.88097	47.909	47.497	48.378	0					57	26	3	0	0	0	0.024205	1	4809	4809		53.351	0.41475	1	709450	+		15630	22088	11104	11124	16915	16915					-0.07133273828048914
FGDILFKN	8	Unmodified	_FGDILFKN_					0	0	0			REV__nc|ENSG00000162368|P30085-2|CMPK1	REV__nc|ENSG00000162368|P30085-2|CMPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2667541503906	2	477.258185	952.501818	0.84317	0.00040241	2.7248	0.0013004	3.5679	0.0017028	477.2594106269052	54.587	0.70751	54.381	54.087	54.794	-0.20613					42	18	3	0	0	0	0.027866	1	5815	5815		18.324	0	1	1942000	+		15631	25429	11105	11125	16916	16916					0.023666863858124998
FGDLAELLL	9	Unmodified	_FGDLAELLL_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7806091308594	2	495.778951	989.543348	-0.16297	-8.0795E-05	3.4096	0.0016904	3.2466	0.0016096	495.78043976460424	89.154	0.75505	89.027	88.701	89.456	-0.12775					47	17	3	0	0	0	0.22754	1	10896	10896		85.359	8.5128	1	1711000	+		15632	20736	11106	11126	16917	16917					0.04815822354487409
FGDLAELLL	9	Unmodified	_FGDLAELLL_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	495.778951	989.543348	-0.82429	-0.00040866	4.1103	0.0020378	3.2861	0.0016292	495.78081246261854	89.189	0.87708	89.027	88.638	89.515	-0.1626	-0.096055	0.0010887	NaN	85.359	61	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360000	+		15633	20736	11106	11126							0.04815822354487409
FGDLAELLL	9	Unmodified	_FGDLAELLL_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	495.778951	989.543348	-0.16297	-8.0795E-05	3.4096	0.0016904	3.2466	0.0016096	495.78043976460424	89.154	0.75505	89.027	88.701	89.456	-0.12775	-0.096188	0.00039393	NaN	85.359	47	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1711000	+		15634	20736	11106	11126							0.04815822354487409
FGDLAELLL	9	Unmodified	_FGDLAELLL_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	495.778951	989.543348	0.075061	3.7214E-05	3.2028	0.0015879	3.2778	0.0016251	495.7803095269077	89.193	0.88331	89.055	88.649	89.532	-0.13761	-0.067679	0.00018881	NaN	85.359	59	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1590200	+		15635	20736	11106	11126							0.04815822354487409
FGDLNLDKV	9	Unmodified	_FGDLNLDKV_					0	0	0			REV__ENSG00000213949|ENST00000282588|ITGA1	REV__ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7856750488281	2	510.771657	1019.52876	0.20866	0.00010658	-0.72538	-0.0003705	-0.51672	-0.00026393	510.7703816780168	87.377	0.37921	87.341	87.026	87.405	-0.035355					10	8	2	0	0	0	0.024344	1	10921	10921		37.812	4.9991	1	47413	+		15636	28759	11107	11127	16918	16918					0.019777502063448082
FGDMCRQRAQ	10	Unmodified	_FGDMCRQRAQ_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9227294921875	3	404.518458	1210.53355	-0.17398	-7.0379E-05	1.4098	0.00057028	1.2358	0.0004999	404.5188890152756	26.724	0.64978	26.488	26.268	26.918	-0.23603					26	15	2	0	0	0	0.03519	1	1433	1433		30.569	10.538	1	588300	+		15637	25582	11108	11128	16919	16919					-0.06330012194189294
FGDQVLQIN	9	Unmodified	_FGDQVLQIN_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2535400390625	2	517.269281	1032.52401	-0.036762	-1.9016E-05	0.01251	6.4711E-06	-0.024252	-1.2545E-05	517.2689544952559	68.429	0.61057	68.167	67.855	68.466	-0.26165					26	14	3	0	0	0	0.024436	1	7913	7913		30.504	13.139	1	95767			15638	5139	11109	11129	16920	16920					0.009048660635926353
FGDRTLIKI	9	Unmodified	_FGDRTLIKI_					0	0	0			REV__nc|ENSG00000134215|Q9UKW4-3|VAV3	REV__nc|ENSG00000134215|Q9UKW4-3|VAV3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8164672851562	2	531.818941	1061.62333	0.26844	0.00014276	-4.3102	-0.0022922	-4.0418	-0.0021495	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.62163	1	10391	10391		51.335	1.8939	1	1303400	+		15639	23426	11110	11130	16921	16921					0.09498308748334239
FGEEYEEQP	9	Unmodified	_FGEEYEEQP_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8609619140625	2	564.230019	1126.44548	-0.78699	-0.00044404	-2.5448	-0.0014359	-3.3318	-0.0018799	564.2284461068434	65.973	0.65491	65.759	65.421	66.076	-0.21327					24	15	2	0	0	0	0.024506	1	7589	7589		30.504	4.9296	1	188030			15640	3883	11111	11131	16922	16922					-0.1126803103218208
FGELNKNLI	9	Unmodified	_FGELNKNLI_					0	0	0		ENSG00000174749|ENST00000309733|FAM241A	ENSG00000174749|ENST00000309733|FAM241A	ENSG00000174749|ENST00000309733|FAM241A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2951049804688	2	524.295299	1046.57605	-0.48822	-0.00025597	4.2426	0.0022244	3.7544	0.0019684	524.2974061099324	100.39	1.4136	100.39	99.871	101.28	0					101	34	5	0	0	0	0.5973	1	12799	12799		52.937	6.9645	1	3300600			15641	8494	11112	11132	16923	16923					0.05462029477325814
FGFGLPLAF	9	Unmodified	_FGFGLPLAF_					0	0	0		ENST00000397776.2_1_1:158424733-158425060:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7703552246094	2	484.765646	967.516739	0.077201	3.7424E-05	0.52258	0.00025333	0.59978	0.00029075	484.76612892300903	43.143	0.51109	43.174	42.902	43.413	0.030827					18	13	2	0	0	0	0.024541	1	3980	3980		14.664	5.8418	1	183550			15642	13602	11113	11133	16924	16924					0.0316817825379303
FGFLLFICK	9	Unmodified	_FGFLLFICK_					0	0	0		nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1	nc|ENSG00000154438|Q8WWH4-2|ASZ1	nc|ENSG00000154438|Q8WWH4-2|ASZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2474365234375	2	544.304081	1086.59361	-1.2206	-0.00066437	3.9737	0.0021629	2.7531	0.0014985	544.3055164598984	52.431	0.3751	52.162	52.018	52.393	-0.26903					16	9	3	0	0	0	0.024466	1	5471	5471		25.45	1.2474	1	121100			15643	6410	11114	11134	16925	16925					0.053776534786265984
FGFRLPSKTP	10	Unmodified	_FGFRLPSKTP_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	575.324391	1148.63423	-0.0061842	-3.5579E-06	4.2412	0.00244	4.235	0.0024365	575.326761209997	89.39	0.4712	89.253	89.148	89.619	-0.13761					17	10	2	0	0	0	0.03519	1	10899	10899		36.447	3.6343	1	117770			15644	3678	11115	11135	16926	16926					0.06585711122625071
FGGIIAPFLL	10	Unmodified	_FGGIIAPFLL_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3126831054688	2	524.315503	1046.61645	-0.2492	-0.00013066	-2.626	-0.0013768	-2.8752	-0.0015075	524.3138457899794	75.264	0.6188	75.005	74.779	75.398	-0.25866					33	14	3	0	0	0	0.47568	1	8918	8918		90.939	11	1	1069200			15645	5890	11116	11136	16927	16927					0.09500995867756501
FGGIWAALLML	11	Unmodified	_FGGIWAALLML_					0	0	0			REV__nc|ENSG00000181958|Q8NGL6|OR4A15	REV__nc|ENSG00000181958|Q8NGL6|OR4A15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.7752685546875	2	596.33337	1190.65219	-0.34734	-0.00020713	0.70337	0.00041944	0.35603	0.00021231	596.3341069132576	69.028	0.53639	68.786	68.587	69.123	-0.24277					16	12	2	0	0	0	0.024791	1	8001	8001		60.294	2.064	1	68467	+		15646	27438	11117	11137	16928	16928					0.0644871005308687
FGGKLKKT	8	Unmodified	_FGGKLKKT_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2584533691406	2	439.776545	877.538538	0.24625	0.0001083	-0.13477	-5.9267E-05	0.11149	4.9029E-05	439.77629991158767	58.26	0.62414	58.351	58.084	58.708	0.091217					36	16	3	0	0	0	0.027866	1	6520	6520		11.511	0	1	1106100			15647	5881	11118	11138	16929	16929					0.09486983002375382
FGGLDSLLLAV	11	Unmodified	_FGGLDSLLLAV_					0	0	0		ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	ENSG00000185385|ENST00000641113|OR7A17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3322143554688	2	552.818607	1103.62266	0.010293	5.6901E-06	-3.5904	-0.0019848	-3.5801	-0.0019792	552.8181314491258	95.675	0.3839	95.678	95.431	95.815	0.0033798					12	8	2	0	0	0	0.024743	1	12130	12130		44.117	17.424	1	44129			15648	9433	11119	11139	16930	16930					0.07499469308618245
FGGLSGATVID	11	Unmodified	_FGGLSGATVID_					0	0	0		ENSG00000117643|ENST00000374332|MAN1C1;ENST00000473891.1_1_1:26013020-26085338:+|nuORF	ENSG00000117643|ENST00000374332|MAN1C1	ENSG00000117643|ENST00000374332|MAN1C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.3236694335938	2	518.769114	1035.52368	-0.23263	-0.00012068	3.8937	0.0020199	3.6611	0.0018992	519.2722220072167	41.528	0.3938	41.528	41.258	41.652	0					13	10	2	0	0	0	0.024747	1	3706	3706		39.253	5.7372	1	150910			15649	3650	11120	11140	16931	16931					0.007334463437018712
FGGLSQLQKL	10	Unmodified	_FGGLSQLQKL_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.816650390625	2	545.816399	1089.61824	-0.068047	-3.7141E-05	-0.20201	-0.00011026	-0.27006	-0.0001474	545.8161391500831	54.345	0.72775	54.443	54.188	54.916	0.098015					55	20	4	0	0	0	0.50091	1	5863	5863		88.177	16.299	1	6086600			15650	5314	11121	11141	16932	16932					0.07702004885709357
FGGLSQLQKL	10	Unmodified	_FGGLSQLQKL_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	545.816399	1089.61824	-1.1681	-0.00063758	0.79573	0.00043432	-0.37238	-0.00020325	545.8166793147973	54.596	0.65727	54.596	54.321	54.979	0	0.074391	0.00044762	NaN	88.177	58	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5122800			15651	5314	11121	11141							0.07702004885709357
FGGLSQLQKL	10	Unmodified	_FGGLSQLQKL_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.816399	1089.61824	-0.70429	-0.00038441	0.58148	0.00031738	-0.1228	-6.7028E-05	545.8165679203358	54.677	0.62754	54.526	54.266	54.894	-0.15036	0.0042454	0.00021374	NaN	88.177	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5018500			15652	5314	11121	11141							0.07702004885709357
FGGLWGALFI	10	Unmodified	_FGGLWGALFI_					0	0	0		nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2610473632812	2	540.797478	1079.5804	-1.1288	-0.00061045	-3.0197	-0.001633	-4.1485	-0.0022435	540.7958959790224	61.499	0.84478	61.321	61.078	61.923	-0.17782					28	20	2	0	0	0	0.03519	1	6956	6956		35.201	0	1	157790			15653	8142	11122	11142	16933	16933					0.04379538690886875
FGGVAFVL	8	Unmodified	_FGGVAFVL_					0	0	0			REV__nc|ENSG00000109466|O95198-3|KLHL2	REV__nc|ENSG00000109466|O95198-3|KLHL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5111999511719	2	405.231439	808.448326	0.45829	0.00018571	1.3645	0.00055296	1.8228	0.00073867	405.2321252158778	32.251	0.62963	32.014	31.867	32.497	-0.23666					18	14	2	0	0	0	0.027866	1	2200	2200		24.504	7.799	1	47845	+		15654	21794	11123	11143	16934	16934					0.03643933673947686
FGGYVAKEK	9	Unmodified	_FGGYVAKEK_					0	0	0		ENSG00000183726|ENST00000374358|TMEM50A	ENSG00000183726|ENST00000374358|TMEM50A	ENSG00000183726|ENST00000374358|TMEM50A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.76904296875	2	499.768917	997.523281	0.88295	0.00044127	-0.3483	-0.00017407	0.53466	0.0002672	499.7685638252807	19.648	0.49397	19.414	19.226	19.72	-0.23345					23	9	3	0	0	0	0.83071	1	419	419		37.159	1.5408	1	260980			15655	9266	11124	11144	16935	16935					0.024420714145207967
FGHLKEVLN	9	Unmodified	_FGHLKEVLN_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7715454101562	2	528.795466	1055.57638	-1.0555	-0.00055812	2.6631	0.0014083	1.6077	0.00085014	529.2985838342331	56.082	0.51623	55.867	55.602	56.118	-0.21551					19	13	2	0	0	0	0.024506	1	6000	6000		30.504	7.4612	1	202360			15656	2864	11125	11145	16936	16936					0.0508144919717779
FGHLLASAAY	10	Unmodified	_FGHLLASAAY_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2540893554688	2	525.274367	1048.53418	-0.73672	-0.00038698	-3.1283	-0.0016432	-3.865	-0.0020302	525.2727825524086	38.029	0.61079	37.811	37.607	38.218	-0.21848					30	17	3	0	0	0	0.03519	1	3156	3156		47.916	18.074	1	391500	+		15657	21300	11126	11146	16937	16937					0.01185473788791569
FGHLLASAAY	10	Unmodified	_FGHLLASAAY_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.274367	1048.53418	-0.6481	-0.00034043	-2.8711	-0.0015081	-3.5192	-0.0018486	525.2730165691039	38.023	0.54643	37.843	37.522	38.068	-0.17929	0.019705	-1.6906E-06	NaN	47.916	34	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266230	+		15658	21300	11126	11146							0.01185473788791569
FGHLLASAAY	10	Unmodified	_FGHLLASAAY_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.274367	1048.53418	-0.9072	-0.00047653	-2.7314	-0.0014347	-3.6386	-0.0019112	525.2730078949818	38.039	0.57566	37.817	37.577	38.153	-0.22149	-0.0066204	0.00014515	NaN	47.916	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268400	+		15659	21300	11126	11146							0.01185473788791569
FGHRFQASD	9	Unmodified	_FGHRFQASD_					0	0	0		ENSG00000135638|ENST00000258106|EMX1	ENSG00000135638|ENST00000258106|EMX1	ENSG00000135638|ENST00000258106|EMX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.78125	2	532.749047	1063.48354	-0.67351	-0.00035881	-3.7278	-0.001986	-4.4013	-0.0023448	533.2472426811969	57.131	0.32162	56.964	56.858	57.18	-0.1672					13	8	2	0	0	0	0.024263	1	6253	6253		51.335	3.6781	1	161620			15660	4919	11127	11147	16938	16938					-0.04566055536179192
FGIATSPII	9	Unmodified	_FGIATSPII_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.27911376953125	2	459.768386	917.522219	0.77041	0.00035421	-0.72167	-0.0003318	0.048743	2.241E-05	459.7680262574194	71.233	0.81094	71.027	70.571	71.382	-0.20613					37	18	3	0	0	0	0.02309	1	8271	8271		68.485	0	1	386200			15661	4880	11128	11148	16939	16939					0.060158570455996596
FGIGLDAKISL	11	Unmodified	_FGIGLDAKISL_					0	0	0		nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH;nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENSG00000274588|ENST00000611977|DGKK	nc|ENSG00000102780|Q86XP1-2|DGKH;nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000274588|ENST00000611977|DGKK	nc|ENSG00000102780|Q86XP1-2|DGKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0292	1	11211	11211		30.318	2.4355	1	19210000			15662	2426;1595;11031	11129	11149	16940	16940					0.0881915819995811
FGIGLDAKISL	11	Unmodified	_FGIGLDAKISL_					0	0	0		nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH;nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;ENST00000490764.5_1_2:234327938-234366271:+|nuORF;nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD;ENSG00000274588|ENST00000611977|DGKK	nc|ENSG00000102780|Q86XP1-2|DGKH;nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000274588|ENST00000611977|DGKK	nc|ENSG00000102780|Q86XP1-2|DGKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.330322265625	2	567.331882	1132.64921	0.14889	8.447E-05	-3.8286	-0.0021721	-3.6797	-0.0020876	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.0344	1	10945	10945		29.17	1.2878	1	5699400			15663	2426;1595;11031	11129	11149	16941	16941					0.0881915819995811
FGIPKKTTTP	10	Unmodified	_FGIPKKTTTP_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.31640625	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.1267	1	10495	10495		29.15	1.2673	1	5204600			15664	1599	11130	11150	16942	16942					0.08222889028456848
FGIRGTLGK	9	Unmodified	_FGIRGTLGK_					0	0	0		ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.784912109375	2	474.784902	947.55525	-0.18352	-8.7134E-05	0.11916	5.6577E-05	-0.064359	-3.0557E-05	474.7847875521458	34.517	0.64692	34.31	34.043	34.69	-0.20696					36	15	4	0	0	0	0.22902	1	2549	2549		85.161	13.283	1	1916600			15665	1098	11131	11151	16943	16943					0.07937483888338193
FGIRGTLGK	9	Unmodified	_FGIRGTLGK_					0	0	0		ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.7845458984375	2	474.784902	947.55525	-0.7031	-0.00033382	0.52156	0.00024763	-0.18154	-8.6193E-05	474.7850087623358	34.464	0.60189	34.288	34.05	34.652	-0.17557					36	14	4	0	0	0	0.2101	1	2519	2519		87.696	5.4559	1	1802000			15666	1098	11131	11151	16944	16944					0.07937483888338193
FGIRKHLLKT	10	Unmodified	_FGIRKHLLKT_					0	0	0		ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9228210449219	3	404.92403	1211.75026	-0.22601	-9.1516E-05	-3.4294	-0.0013886	-3.6554	-0.0014801	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	1.1277	1	1421	1421		25.126	0.6068	1	42722000			15667	8995	11132	11152	16945	16945					0.15285654693320794
FGITTLAWYL	10	Unmodified	_FGITTLAWYL_					0	0	0			REV__ENSG00000156006|ENST00000286479|NAT2	REV__ENSG00000156006|ENST00000286479|NAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	592.2976684570312	2	592.82115	1183.62775	-1.1748	-0.00069643	0.42215	0.00025026	-0.75262	-0.00044617	592.821393790815	82.429	0.65166	82.289	82.043	82.694	-0.14014					43	14	5	0	0	0	0.03519	1	9939	9939		63.306	19.189	1	391810	+		15668	25044	11133	11153	16946	16946					0.04327773171212357
FGKEKFEV	8	Unmodified	_FGKEKFEV_					0	0	0		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.263671875	2	492.263468	982.512382	-0.8459	-0.0004164	0.095782	4.715E-05	-0.75012	-0.00036925	492.2632831776356	40.013	0.8128	39.863	39.591	40.404	-0.1497					55	21	4	0	0	0	0.4295	1	3434	3434		93.143	13.431	1	2276300			15669	4324	11134	11154	16947	16947					0.02042669040235978
FGKEKFEV	8	Unmodified	_FGKEKFEV_					0	0	0		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.263468	982.512382	-0.073428	-3.6146E-05	-0.82599	-0.0004066	-0.89941	-0.00044275	492.26286793577293	40.167	1.0353	39.942	39.696	40.731	-0.225	0.016739	-0.00052116	NaN	93.143	64	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2309200			15670	4324	11134	11154							0.02042669040235978
FGKEKFEV	8	Unmodified	_FGKEKFEV_					0	0	0		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.263468	982.512382	-0.69424	-0.00034175	-0.17673	-8.6997E-05	-0.87097	-0.00042875	492.26318913254084	40.201	1.1495	39.971	39.66	40.809	-0.2302	0.045812	0.00011805	NaN	93.143	56	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1978300			15671	4324	11134	11154							0.02042669040235978
FGKNQMVTPPY	11	Unmodified	_FGKNQMVTPPY_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7296142578125	3	427.881391	1280.62234	-1.0898	-0.00046631	1.3084	0.00055984	0.21858	9.3528E-05	427.8819418958805	28.801	0.51662	28.556	28.322	28.838	-0.24524					18	11	2	0	0	0	0.024782	1	1741	1741		19.263	9.6165	1	79721	+		15672	25914	11135	11155	16948	16948					-0.006742736828982743
FGKPRLLR	8	Unmodified	_FGKPRLLR_					0	0	0			REV__ENSG00000278889|ENST00000341959|OR2S2	REV__ENSG00000278889|ENST00000341959|OR2S2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.81536865234375	2	493.816536	985.618519	-0.01645	-8.1233E-06	-0.31024	-0.0001532	-0.32669	-0.00016132	493.8161430642543	66.741	1.2941	66.741	66.461	67.755	0					65	32	4	0	0	0	1.0574	1	7943	7943		12.959	0.75233	1	2254700	+		15673	29224	11136	11156	16949	16949					0.12513469396230903
FGKSTVKMVQ	10	Unmodified	_FGKSTVKMVQ_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.27685546875	2	562.810259	1123.60597	0.23219	0.00013068	0.63666	0.00035832	0.86884	0.00048899	562.8104431825748	81.607	0.62979	81.413	81.131	81.76	-0.19334					27	14	3	0	0	0	0.03519	1	9837	9837		60.118	6.7668	1	257250			15674	11045	11137	11157	16950	16950					0.04910645151016979
FGLARAFSL	9	Unmodified	_FGLARAFSL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.2796630859375	2	491.279452	980.544351	-0.38528	-0.00018928	0.10673	5.2432E-05	-0.27856	-0.00013685	491.27944971331925	72.203	1.9235	71.928	70.877	72.801	-0.2751					116	45	5	0	0	0	0.03849	5	8438	8427;8438;8452;8465;8478		134.81	70.603	1	4207400			15675	5045	11138	11158	16951;16952;16953;16954;16955	16952					0.053300815140460145
FGLARAFSL	9	Unmodified	_FGLARAFSL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.2798767089844	2	491.279452	980.544351	0.44919	0.00022068	-0.66046	-0.00032447	-0.21127	-0.00010379	491.2790180138523	72.162	1.5767	71.9	71.403	72.98	-0.26199					90	37	4	0	0	0	0.067814	4	8442	8442;8453;8465;8479		122.18	53.389	1	4120300			15676	5045	11138	11158	16956;16957;16958;16959	16956					0.053300815140460145
FGLARAFSL	9	Unmodified	_FGLARAFSL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.2798767089844	2	491.279452	980.544351	0.10905	5.3576E-05	-0.28977	-0.00014236	-0.18071	-8.8781E-05	491.2792130657053	71.928	1.248	71.722	71.497	72.745	-0.20614					86	29	5	0	0	0	0.027092	4	8415	8403;8415;8428;8441		143.89	69.632	1	4086400			15677	5045	11138	11158	16960;16961;16962;16963	16961					0.053300815140460145
FGLARAKSV	9	Unmodified	_FGLARAKSV_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000506489.1_1_1:205496975-205497827:+|nuORF;ENST00000550971.5_1_12:96677414-96688846:-|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14	nc|ENSG00000059758|Q00537-2|CDK17;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.7848815917969	2	474.784902	947.55525	0.25494	0.00012104	-0.22472	-0.00010669	0.030229	1.4352E-05	474.78463351299683	34.543	0.74673	34.319	33.997	34.744	-0.22412					37	18	3	0	0	0	0.2101	2	2545	2545;2564		87.696	18.069	1	2051100			15678	1225;15735;1211	11139	11159	16964;16965	16964					0.07937483888326824
FGLARAKSV	9	Unmodified	_FGLARAKSV_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000506489.1_1_1:205496975-205497827:+|nuORF;ENST00000550971.5_1_12:96677414-96688846:-|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14	nc|ENSG00000059758|Q00537-2|CDK17;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.7848205566406	2	474.784902	947.55525	-0.7031	-0.00033382	0.52156	0.00024763	-0.18154	-8.6193E-05	474.7850087623358	34.464	0.60189	34.288	34.05	34.652	-0.17557					36	14	4	0	0	0	0.17822	1	2531	2531		93.195	21.9	1	1802000			15679	1225;15735;1211	11139	11159	16966	16966					0.07937483888326824
FGLEHAPL	8	Unmodified	_FGLEHAPL_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|375|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|375|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|375|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.24761962890625	2	442.237253	882.459953	-0.33211	-0.00014687	-3.4418	-0.0015221	-3.7739	-0.001669	442.2340066142067	57.852	0.4998	57.944	57.797	58.297	0.091217					27	13	3	0	0	0	0.027866	1	6455	6455		37.028	3.5129	1	352690			15680	17884	11140	11160	16967	16967					0.0140213069728361
FGLFTFFLS	9	Unmodified	_FGLFTFFLS_					0	0	0		ENST00000310528.8_1_13:53262132-53262462:+|nuORF	ENST00000310528.8_1_13:53262132-53262462:+|nuORF	ENST00000310528.8_1_13:53262132-53262462:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7623901367188	2	539.784036	1077.55352	-0.39193	-0.00021156	4.4185	0.002385	4.0265	0.0021735	540.2891956902646	34.057	0.39356	33.833	33.64	34.033	-0.22412					14	9	2	0	0	0	0.024381	1	2486	2486		45.952	0	1	69320			15681	12063	11141	11161	16968	16968					0.01784430079737831
FGLHLFHK	8	Unmodified	_FGLHLFHK_					0	0	0			REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3065185546875	2	499.782162	997.549771	-1.4211	-0.00071022	1.2978	0.00064859	-0.1233	-6.1626E-05	499.78218143391143	92.987	1.4325	92.843	92.654	94.086	-0.14356					42	32	2	0	0	0	0.027866	1	11584	11584		37.028	10.232	1	170100	+		15682	21406	11142	11162	16969	16969					0.050898050965201946
FGLIALINKS	10	Unmodified	_FGLIALINKS_					0	0	0			REV__ENSG00000138185|ENST00000371205|ENTPD1	REV__ENSG00000138185|ENST00000371205|ENTPD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3295288085938	2	538.329142	1074.64373	0.30756	0.00016557	-4.081	-0.0021969	-3.7735	-0.0020314	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	1.1267	1	12482	12482		29.15	6.1071	1	21168000	+		15683	23833	11143	11163	16970	16970					0.10939479408125408
FGLIHLLL	8	Unmodified	_FGLIHLLL_					0	0	0		ENST00000397954.6_1_15:25601962-25605532:-|nuORF	ENST00000397954.6_1_15:25601962-25605532:-|nuORF	ENST00000397954.6_1_15:25601962-25605532:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7559814453125	2	463.297114	924.579674	-0.1489	-6.8985E-05	-3.9757	-0.001842	-4.1246	-0.0019109	463.2951055072852	40.305	0.50659	40.328	40.088	40.595	0.023006					29	13	3	0	0	0	0.027866	1	3514	3514		33.493	9.2902	1	531220			15684	13609	11144	11164	16971	16971					0.11436744041861857
FGLILGCLSL	10	Unmodified	_FGLILGCLSL_					0	0	0		SLC39A12|p.W676C|1|0.35|ENSG00000148482|chr10:18042785-18042785|G/T|missense_variant	SLC39A12|p.W676C|1|0.35|ENSG00000148482|chr10:18042785-18042785|G/T|missense_variant	SLC39A12|p.W676C|1|0.35|ENSG00000148482|chr10:18042785-18042785|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2968139648438	2	518.298996	1034.58344	-0.78256	-0.0004056	-2.7136	-0.0014065	-3.4962	-0.0018121	518.2976765003833	102.67	3.4549	102.67	101.08	104.53	0					224	81	6	0	0	0	0.68163	1	13240	13240		68.485	5.1784	1	63214000			15685	37891	11145	11165	16972	16972					0.06753045753384868
FGLISVLLL	9	Unmodified	_FGLISVLLL_					0	0	0			REV__ENSG00000162695|ENST00000357650|SLC30A7	REV__ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.3207702636719	2	487.817879	973.621205	-0.18203	-8.8798E-05	1.5244	0.00074365	1.3424	0.00065485	487.81782356186727	103.83	0.99443	103.83	103.38	104.38	0					40	23	2	0	0	0	0.85941	1	13314	13314		35.201	0	1	175110	+		15686	25476	11146	11166	16973	16973					0.13333880010532084
FGLLVKQSH	9	Unmodified	_FGLLVKQSH_					0	0	0			REV__ENSG00000182631|ENST00000330120|RXFP3	REV__ENSG00000182631|ENST00000330120|RXFP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8004760742188	2	514.798009	1027.58147	-0.87535	-0.00045063	-1.2288	-0.00063259	-2.1042	-0.0010832	514.797053097942	31.434	0.5372	31.434	31.173	31.71	0					19	12	2	0	0	0	0.024344	1	2131	2131		30.318	4.8675	1	302050	+		15687	27499	11147	11167	16974	16974					0.06877753059779934
FGLLVKQSH	9	Unmodified	_FGLLVKQSH_					0	0	0			REV__ENSG00000182631|ENST00000330120|RXFP3	REV__ENSG00000182631|ENST00000330120|RXFP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.798009	1027.58147	-0.6889	-0.00035465	-2.6773	-0.0013783	-3.3662	-0.0017329	514.7964753545734	31.118	0.41523	31.187	30.912	31.327	0.068962	-0.14104	0.00022867	NaN	30.318	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350090	+		15688	27499	11147	11167							0.06877753059779934
FGLPPVSRQT	10	Unmodified	_FGLPPVSRQT_					0	0	0			REV__ENST00000378787.7_2_13:46946699-46961463:-|nuORF	REV__ENST00000378787.7_2_13:46946699-46961463:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2927856445312	2	551.306198	1100.59784	-0.81588	-0.0004498	1.0147	0.0005594	0.19879	0.00010959	551.3063204999369	40.656	0.5897	40.679	40.275	40.864	0.023006					23	16	2	0	0	0	0.03519	1	3553	3553		47.657	26.71	1	947640	+		15689	31416	11148	11168	16975	16975					0.051568342258860866
FGLQTLQVP	9	Unmodified	_FGLQTLQVP_					0	0	0			REV__ENST00000428210.5_1_2:61729402-61752656:-|nuORF	REV__ENST00000428210.5_1_2:61729402-61752656:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2867736816406	2	501.784567	1001.55458	-0.20453	-0.00010263	0.091426	4.5876E-05	-0.11311	-5.6756E-05	501.78412106519426	63.197	0.81959	62.939	62.606	63.425	-0.25824					45	20	3	0	0	0	0.80003	1	7141	7141		39.253	0.44669	1	2321100	+		15690	32318	11149	11169	16976	16976					0.05386644448617517
FGLRANQT	8	Unmodified	_FGLRANQT_					0	0	0		ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.2637939453125	2	453.743234	905.471915	-0.417	-0.00018921	0.5278	0.00023948	0.11079	5.0271E-05	453.7433170512156	22.9	2.6569	22.715	20.494	23.151	-0.18539					85	55	2	0	0	0	0.027866	1	669	669		23.042	0	1	141110			15691	1965	11150	11170	16977	16977					0.015397474404721834
FGLRANQT	8	Unmodified	_FGLRANQT_					0	0	0		ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	453.743234	905.471915	0.52364	0.0002376	-0.24489	-0.00011112	0.27875	0.00012648	453.7429095906232	22.58	1.4992	22.391	21.434	22.933	-0.18894	-0.16195	-0.00042541	NaN	6.3127	56	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111440			15692	1965	11150	11170							0.015397474404721834
FGLSSLVFSP	10	Unmodified	_FGLSSLVFSP_					0	0	0			REV__nc|ENSG00000169682|Q9H2V7-4|SPNS1	REV__nc|ENSG00000169682|Q9H2V7-4|SPNS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.273681640625	2	527.2844	1052.55425	-1.3287	-0.00070062	0.23598	0.00012443	-1.0928	-0.0005762	527.2843997715072	92.12	1.7103	92.12	91.299	93.009	0					71	40	2	0	0	0	0.03519	1	11636	11636		58.782	0	1	858370	+		15693	26391	11151	11171	16978	16978					0.030072247287762366
FGLSVLIRVRL	11	Unmodified	_FGLSVLIRVRL_					0	0	0		ENSG00000130304|ENST00000252595|SLC27A1	ENSG00000130304|ENST00000252595|SLC27A1	ENSG00000130304|ENST00000252595|SLC27A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.9134521484375	3	424.943202	1271.80778	-0.57835	-0.00024577	-2.6023	-0.0011058	-3.1807	-0.0013516	424.942205906549	39.271	0.2493	39.295	39.206	39.455	0.023727					9	6	2	0	0	0	0.024748	1	3324	3324		37.508	23.422	1	68944			15694	4409	11152	11172	16979	16979					0.18274496898879988
FGLVFYFAT	9	Unmodified	_FGLVFYFAT_					0	0	0		nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENST00000555867.1_1_14:73673029-73685994:+|nuORF	nc|ENSG00000080815|P49768-6|PSEN1	nc|ENSG00000080815|P49768-6|PSEN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8168334960938	2	532.776211	1063.53787	-0.36624	-0.00019512	1.0764	0.00057349	0.71018	0.00037837	533.2808868585257	86.781	0.5125	86.803	86.373	86.886	0.021255					16	11	2	0	0	0	0.024443	1	10806	10806		26.796	5.8492	1	117510			15695	1695	11153	11173	16980	16980					0.008641435626714156
FGMRDPPMFI	10	Unmodified	_FGMRDPPMFI_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	606.3692016601562	2	605.791012	1209.56747	-0.14752	-8.9366E-05	-0.70162	-0.00042503	-0.84914	-0.0005144	606.2920409812814	92.761	0.25101	92.619	92.536	92.787	-0.14268					7	5	2	0	0	0	0.03519	1	11385	11385		49.536	8.7579	1	34873			15696	6477	11154	11174	16981	16981					-0.02892983755145906
FGNKKTQPS	9	Unmodified	_FGNKKTQPS_					0	0	0			REV__ENST00000523821.5_1_8:97270883-97273776:-|nuORF	REV__ENST00000523821.5_1_8:97270883-97273776:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7869873046875	2	503.769448	1005.52434	0.43186	0.00021756	-1.4163	-0.00071347	-0.98441	-0.00049591	503.7688260942024	54.487	0.34303	54.585	54.426	54.769	0.098011					14	9	2	0	0	0	0.024523	1	5876	5876		21.96	0	1	89010	+		15697	34362	11155	11175	16982	16982					0.021802857834245515
FGNLEPLIL	9	Unmodified	_FGNLEPLIL_					0	0	0		ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENST00000435236.2_1_X:98974480-98975440:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2936096191406	2	508.294768	1014.57498	-0.23487	-0.00011938	-0.18904	-9.609E-05	-0.42392	-0.00021547	508.2946193496138	94.493	1.0049	94.493	94.088	95.093	0					76	23	4	0	0	0	0.42604	1	12054	12054		64.207	14.766	1	3396100			15698	14259	11156	11176	16983	16983					0.06827815108431423
FGNVNLTQL	9	Unmodified	_FGNVNLTQL_					0	0	0			REV__ENST00000380680.4_1_13:30339900-30340053:-|nuORF	REV__ENST00000380680.4_1_13:30339900-30340053:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.77777099609375	2	503.271824	1004.5291	0.31751	0.00015979	-2.0308	-0.0010221	-1.7133	-0.00086228	503.7726887411054	71.182	2.3181	70.976	70.469	72.787	-0.20614					108	55	4	0	0	0	0.67687	1	8310	8310		47.657	1.6851	1	1983600	+		15699	31490	11157	11177	16984	16984					0.027011699261720423
FGNVTAGRGR	10	Unmodified	_FGNVTAGRGR_					0	0	0			REV__ENST00000413366.7_1_17:64803756-64804182:+|nuORF	REV__ENST00000413366.7_1_17:64803756-64804182:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7786254882812	2	517.778139	1033.54173	-1.2608	-0.00065284	3.0593	0.001584	1.7984	0.0009312	517.7797168483461	85.659	0.66413	85.682	85.408	86.072	0.023666					25	15	2	0	0	0	0.03519	1	10700	10700		26.693	0	1	463360	+		15700	32021	11158	11178	16985	16985					0.026296261090692497
FGPFYRYI	8	Unmodified	_FGPFYRYI_					0	0	0			REV__nc|ENSG00000100997|Q8N2K0-3|ABHD12	REV__nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.77392578125	2	531.774003	1061.53345	-0.26972	-0.00014343	2.0037	0.0010655	1.734	0.00092208	531.7752879999998	106.43	0.76709	106.43	106.09	106.86	-0.0013123					50	25	3	0	0	0	0.94001	1	13622	13622		46.766	9.738	1	614130	+		15701	21173	11159	11179	16986	16986					0.005146791397464767
FGPGPFKK	8	Unmodified	_FGPGPFKK_					0	0	0			REV__ENST00000267935.12_1_15:75628383-75630403:+|nuORF	REV__ENST00000267935.12_1_15:75628383-75630403:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.5302429199219	2	439.250163	876.485774	-0.12446	-5.4667E-05	-3.4489	-0.0015149	-3.5734	-0.0015696	439.24861288402263	19.812	0.57832	19.651	19.43	20.009	-0.16079					19	11	2	0	0	0	0.027866	1	445	445		33.516	0.022601	1	31601	+		15702	29773	11160	11180	16987	16987					0.04259024939563005
FGPGPFKK	8	Unmodified	_FGPGPFKK_					0	0	0			REV__ENST00000267935.12_1_15:75628383-75630403:+|nuORF	REV__ENST00000267935.12_1_15:75628383-75630403:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	439.250163	876.485774	0.93344	0.00041001	-4.6638	-0.0020486	-3.7304	-0.0016386	439.24811152254995	19.926	0.29534	19.726	19.554	19.85	-0.2001	0.037414	-0.00050633	NaN	33.516	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19509	+		15703	29773	11160	11180							0.04259024939563005
FGPHFAAVLD	10	Unmodified	_FGPHFAAVLD_					0	0	0			REV__nc|ENSG00000166343|Q4VC12-2|MSS51	REV__nc|ENSG00000166343|Q4VC12-2|MSS51	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2957153320312	2	537.274367	1072.53418	-1.1804	-0.00063418	1.109	0.00059582	-0.071402	-3.8363E-05	537.2757100524624	37.567	0.24748	37.503	37.342	37.589	-0.063385					5	4	2	0	0	0	0.03519	1	3069	3069		20.947	6.2828	1	97881	+		15704	26003	11161	11181	16988	16988					0.0008147378880494216
FGPILGPAET	10	Unmodified	_FGPILGPAET_					0	0	0			REV__nc|ENSG00000135018|Q9UMX0-2|UBQLN1	REV__nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2904357910156	2	501.26875	1000.52295	-0.044027	-2.207E-05	2.3596	0.0011828	2.3156	0.0011607	501.27129759669685	86.509	0.21721	86.464	86.336	86.554	-0.045097					7	4	2	0	0	0	0.03519	1	10846	10846		24.203	0	1	17467	+		15705	36683	11162	11182	16989	16989					0.022706516946755073
FGPIQGAKLA	10	Unmodified	_FGPIQGAKLA_					0	0	0			REV__ENSG00000036828|ENST00000639785|CASR	REV__ENSG00000036828|ENST00000639785|CASR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2899169921875	2	501.292559	1000.57057	0.49826	0.00024977	-4.4318	-0.0022216	-3.9335	-0.0019719	501.29014568622995	88.196	2.1736	88.169	87.814	89.988	-0.027664					89	51	3	0	0	0	1.0781	1	11107	11107		35.618	1.4457	1	939860	+		15706	20067	11163	11183	16990	16990					0.07030350685511166
FGPISEVVVV	10	Unmodified	_FGPISEVVVV_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8170776367188	2	523.30005	1044.58555	-0.54201	-0.00028363	-0.77551	-0.00040583	-1.3175	-0.00068946	523.2995398891263	91.666	0.5564	91.654	91.405	91.961	-0.012383					28	12	3	0	0	0	0.03519	1	11611	11611		34.173	0	1	360610			15707	2402	11164	11184	16991	16991					0.06503797762843533
FGPISEVVVV	10	Unmodified	_FGPISEVVVV_					0	0	0		ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	ENST00000466764.5_1_X:48433568-48434262:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.30005	1044.58555	-1.4973	-0.00078354	-0.13264	-6.941E-05	-1.6299	-0.00085295	523.2997378281528	91.663	0.59417	91.663	91.468	92.062	0	0.004494	0.00034727	NaN	34.173	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340110			15708	2402	11164	11184							0.06503797762843533
FGPLILIYV	9	Unmodified	_FGPLILIYV_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.8192138671875	2	517.817879	1033.6212	0.2515	0.00013023	2.4028	0.0012442	2.6543	0.0013745	517.8189853050599	91.961	1.1386	91.819	91.357	92.495	-0.14131					76	26	4	0	0	0	0.93795	1	11290	11290		29.842	0	1	1075800	+		15709	28484	11165	11185	16992	16992					0.10573880010520043
FGPNEIGQI	9	Unmodified	_FGPNEIGQI_					0	0	0			REV__ENSG00000107738|ENST00000394957|VSIR	REV__ENSG00000107738|ENST00000394957|VSIR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.75872802734375	2	487.750724	973.486896	-0.13982	-6.8199E-05	0.49638	0.00024211	0.35656	0.00017391	487.7509504093895	75.836	1.2307	75.577	74.991	76.221	-0.25866					73	30	4	0	0	0	0.30449	1	8942	8942		75.043	10.836	1	2560900	+		15710	21682	11166	11186	16993	16993					-0.0009080548219344564
FGPRPLPAPVV	11	Unmodified	_FGPRPLPAPVV_					0	0	0		ENST00000381714.7_1_15:77713290-77740097:+|nuORF;ENST00000558176.1_1_15:77713290-77750839:+|nuORF;ENST00000560986.1_1_15:77713290-77756735:+|nuORF	ENST00000381714.7_1_15:77713290-77740097:+|nuORF	ENST00000381714.7_1_15:77713290-77740097:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.3448486328125	2	575.342584	1148.67061	0.72587	0.00041762	4.4757	0.0025751	5.2016	0.0029927	575.345019698839	97.117	1.277	96.993	96.572	97.849	-0.12368					101	28	5	0	0	0	1.0685	1	12076	12076		19.997	2.5288	1	3498400			15711	13348	11167	11187	16994	16994					0.10222588019291834
FGPRPVQI	8	Unmodified	_FGPRPVQI_					0	0	0			REV__ENSG00000165186|ENST00000379361|PTCHD1	REV__ENSG00000165186|ENST00000379361|PTCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2650451660156	2	457.266345	912.518136	-0.61064	-0.00027923	-3.3452	-0.0015296	-3.9558	-0.0018089	457.2646490789165	94.319	1.5384	94.181	93.616	95.155	-0.13779					79	35	4	0	0	0	0.91239	1	11603	11603		50.025	4.0726	1	1504400	+		15712	25852	11168	11188	16995	16995					0.05837812342565485
FGPSVLWPLL	10	Unmodified	_FGPSVLWPLL_					0	0	0		ENST00000335508.10_1_2:198266746-198267288:-|nuORF	ENST00000335508.10_1_2:198266746-198267288:-|nuORF	ENST00000335508.10_1_2:198266746-198267288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.3526000976562	2	564.826235	1127.63792	0.57958	0.00032736	-4.3183	-0.0024391	-3.7388	-0.0021118	565.3258943207518	87.147	0.46054	87.011	86.885	87.346	-0.13613					17	10	2	0	0	0	0.03519	1	10590	10590		37.159	0	1	91946			15713	12393	11169	11189	16996	16996					0.0792038089646212
FGPVGREGA	9	Unmodified	_FGPVGREGA_					0	0	0			REV__CON__P04258	REV__CON__P04258	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.22833251953125	2	445.229959	888.445365	-0.2891	-0.00012872	-4.0568	-0.0018062	-4.3459	-0.0019349	445.22803051653125	26.11	1.524	25.942	25.662	27.186	-0.16816					93	39	4	0	0	0	0.85329	1	1330	1330		35.618	1.4457	1	5333000	+	+	15714	19543	11170	11190	16997	16997					-0.0033194145087236393
FGQDIISPLL	10	Unmodified	_FGQDIISPLL_					0	0	0		ENST00000556413.1_1_14:31097419-31099772:+|nuORF;SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant;ENSG00000092108|ENST00000458591|SCFD1	ENST00000556413.1_1_14:31097419-31099772:+|nuORF	ENST00000556413.1_1_14:31097419-31099772:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8140869140625	2	551.810782	1101.60701	-0.81691	-0.00045078	-2.4536	-0.0013539	-3.2705	-0.0018047	551.8096888921913	93.521	0.98212	93.516	93.242	94.224	-0.0042038					31	23	2	0	0	0	0.03519	1	11832	11832		51.193	0	1	481960			15715	1980	11171	11191	16998	16998					0.06027182791581254
FGQFFDHVI	9	Unmodified	_FGQFFDHVI_					0	0	0		nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-2|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;ENSG00000082126|ENST00000409474|MPP4	nc|ENSG00000082126|Q96JB8-5|MPP4	nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.2723388671875	2	555.274367	1108.53418	-0.22298	-0.00012381	-3.7783	-0.002098	-4.0013	-0.0022218	555.2721505352079	36.55	0.9672	36.344	35.987	36.954	-0.20518					75	24	4	0	0	0	0.27161	1	2891	2891		79.451	9.8234	1	5506800			15716	1723	11172	11192	16999	16999					-0.015745262111977354
FGQFHILSHM	10	Unmodified	_FGQFHILSHM_					0	0	0			REV__ENSG00000004948|ENST00000426151|CALCR	REV__ENSG00000004948|ENST00000426151|CALCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2243957519531	3	406.202576	1215.5859	0.69136	0.00028083	1.9344	0.00078577	2.6258	0.0010666	406.2032840630815	22.771	0.8711	22.569	22.285	23.156	-0.20199					31	18	2	0	0	0	0.03519	1	847	847		22.58	19.892	1	419200	+		15717	19790	11173	11193	17000	17000					-0.013271057889596705
FGQLHGSAI	9	Unmodified	_FGQLHGSAI_					0	0	0			REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.26495361328125	2	465.245609	928.476666	0.097683	4.5447E-05	-0.72628	-0.0003379	-0.6286	-0.00029245	465.246054335923	58.246	0.43871	58.246	58.056	58.495	0					15	11	2	0	0	0	0.024319	1	6625	6625		56.721	12.604	1	211000	+		15718	33152	11174	11194	17001	17001					0.009566315832444161
FGQTILFQF	9	Unmodified	_FGQTILFQF_					0	0	0			REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3179321289062	2	550.792392	1099.57023	-0.41348	-0.00022774	-3.017	-0.0016618	-3.4305	-0.0018895	550.7909838170492	64.404	0.62571	64.169	63.943	64.568	-0.2345					31	15	3	0	0	0	0.024025	1	7313	7313		62.107	6.6032	1	385070	+		15719	29524	11175	11195	17002	17002					0.024429309656625264
FGQTILFQF	9	Unmodified	_FGQTILFQF_					0	0	0			REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.31787109375	2	550.792392	1099.57023	-0.058063	-3.1981E-05	-3.3291	-0.0018336	-3.3871	-0.0018656	550.7904768320786	64.367	0.58955	64.174	63.921	64.51	-0.19243					23	14	2	0	0	0	0.023837	1	7314	7314		74.255	16.025	1	347830	+		15720	29524	11175	11195	17003	17003					0.024429309656625264
FGQTILFQF	9	Unmodified	_FGQTILFQF_					0	0	0			REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.792392	1099.57023	-0.81356	-0.0004481	-2.7728	-0.0015272	-3.5864	-0.0019753	550.7907922052577	64.395	0.70879	64.133	63.864	64.572	-0.2626	-0.027371	0.00087433	NaN	74.255	47	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1403800	+		15721	29524	11175	11195							0.024429309656625264
FGQTILFQF	9	Unmodified	_FGQTILFQF_					0	0	0			REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.792392	1099.57023	0.64925	0.0003576	-4.4406	-0.0024458	-3.7913	-0.0020882	550.7899454288354	64.122	0.66764	64.168	63.975	64.642	0.045509	0.0080361	-0.00096286	NaN	74.255	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1625300	+		15722	29524	11175	11195							0.024429309656625264
FGQVPDQPAGL	11	Unmodified	_FGQVPDQPAGL_					0	0	0		ENSG00000138073|ENST00000260643|PREB;ENST00000468045.5_1_2:27354838-27356101:-|nuORF	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.31640625	2	564.787838	1127.56112	-0.7007	-0.00039575	-1.8459	-0.0010426	-2.5466	-0.0014383	565.2887020647537	94.742	0.6083	94.746	94.575	95.183	0.0041199					20	13	2	0	0	0	0.024643	1	12023	12023		75.043	14.071	1	79731			15723	5199	11176	11196	17004	17004					0.0024453760931919533
FGRCFGQVY	9	Unmodified	_FGRCFGQVY_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MSMS	OPSCC_39_ClassI_Rep-3	3	538.754638671875	2	538.752744	1075.49094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.58	1	110.59	110.09	111.09	0.0069427								0	0	0	0.70893	1	13925	13925		18.324	1.8513	1		+		15724	27209	11177	11197	17005	17005					-0.043790392601295025
FGRDLLSIS	9	Unmodified	_FGRDLLSIS_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;ENST00000497004.5_1_3:158289136-158315942:+|nuORF;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340-2|MLF1	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.777099609375	2	504.279649	1006.54475	0.21917	0.00011052	-2.6916	-0.0013573	-2.4724	-0.0012468	504.2781299616485	71.409	0.54445	71.134	70.967	71.511	-0.27509					33	12	5	0	0	0	0.024257	1	8338	8338		49.536	5.1589	1	645470			15725	8788	11178	11198	17006	17006					0.04173456443231771
FGRGLRGL	8	Unmodified	_FGRGLRGL_					0	0	0		ENST00000263083.10_1_17:1944800-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.2635498046875	2	438.264136	874.51372	-0.442	-0.00019371	-0.83211	-0.00036468	-1.2741	-0.00055839	438.26364621628903	41.031	1.8467	40.801	40.485	42.331	-0.23029					96	49	4	0	0	0	1.0574	1	3594	3594		26.796	0	1	1620600			15726	11520	11179	11199	17007	17007					0.07144347919643224
FGRGLSDK	8	Unmodified	_FGRGLSDK_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.5302429199219	2	440.237784	878.461016	-0.18668	-8.2182E-05	-0.13593	-5.9843E-05	-0.32261	-0.00014203	440.2374043653291	19.832	0.58136	19.672	19.381	19.962	-0.16079					13	11	2	0	0	0	0.027866	1	445	445		30.504	19.638	1	24018			15727	6466	11180	11200	17008	17008					0.016923450661806783
FGRLHNKR	8	Unmodified	_FGRLHNKR_					0	0	0		ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2982788085938	2	514.299042	1026.58353	-0.26021	-0.00013383	-1.9155	-0.00098513	-2.1757	-0.001119	514.2978037910609	95.323	1.1741	95.171	94.667	95.842	-0.15186					65	26	4	0	0	0	1.0572	1	11762	11762		28.254	0	1	1560600			15728	8617	11181	11201	17009	17009					0.07130226588242294
FGRLVFMQVF	10	Unmodified	_FGRLVFMQVF_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3361206054688	2	622.336444	1242.65834	0.2866	0.00017836	-0.16946	-0.00010546	0.11714	7.29E-05	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.1217	1	13549	13549		21.96	1.013	1	1619900	+		15729	27966	11182	11202	17010	17010					0.046712282846101516
FGRTNRIL	8	Unmodified	_FGRTNRIL_					0	0	0			REV__ENSG00000157014|ENST00000448281|TATDN2	REV__ENSG00000157014|ENST00000448281|TATDN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.78973388671875	2	488.787976	975.561398	0.039317	1.9217E-05	1.9411	0.00094879	1.9804	0.000968	488.78909602814883	106.25	0.41726	106.24	106.09	106.51	-0.0013123					16	12	2	0	0	0	0.94517	1	13612	13612		45.952	3.5558	1	271100	+		15730	25106	11183	11203	17011	17011					0.0726400211985947
FGSEKNHLTE	10	Unmodified	_FGSEKNHLTE_					0	0	0			REV__ENSG00000197565|ENST00000334504|COL4A6	REV__ENSG00000197565|ENST00000334504|COL4A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.281494140625	2	581.280377	1160.5462	-1.9719	-0.0011462	1.4309	0.00083178	-0.54094	-0.00031444	581.2811832544726	52.38	0.8421	52.111	51.831	52.673	-0.26903					54	21	4	0	0	0	0.57594	1	5429	5429		79.713	0.26157	1	2557800	+		15731	28319	11184	11204	17012	17012					-0.027649542586686948
FGSGAKRPA	9	Unmodified	_FGSGAKRPA_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.7455139160156	2	445.745776	889.477	-0.32055	-0.00014288	-0.423	-0.00018855	-0.74355	-0.00033143	445.74561803646117	24.828	1.4876	24.612	24.336	25.824	-0.2151					85	34	4	0	0	0	0.11848	4	1120	1108;1120;1132;1144		106.42	25.22	1	13635000			15732	18749	11185	11205	17013;17014;17015;17016	17014					0.027840513030810143
FGSGAKRPA	9	Unmodified	_FGSGAKRPA_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.7455749511719	2	445.745776	889.477	-0.19655	-8.7612E-05	-0.43321	-0.0001931	-0.62977	-0.00028072	445.74560015305804	24.659	1.4484	24.485	24.169	25.617	-0.17484					80	33	4	0	0	0	0.18915	4	1089	1079;1089;1101;1113		90.777	19.481	1	12379000			15733	18749	11185	11205	17017;17018;17019;17020	17018					0.027840513030810143
FGSGAKRPA	9	Unmodified	_FGSGAKRPA_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	445.745776	889.477	2.1314	0.00095007	-2.8663	-0.0012776	-0.73484	-0.00032755	445.7445362620839	24.705	1.4587	24.524	24.198	25.656	-0.18089	-0.016338	-0.0012946	NaN	106.42	75	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11669000			15734	18749	11185	11205							0.027840513030810143
FGSLAALVVH	10	Unmodified	_FGSLAALVVH_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.290283203125	2	507.292559	1012.57057	-0.75365	-0.00038232	-3.409	-0.0017294	-4.1627	-0.0021117	507.2906717465842	33.023	0.72404	32.857	32.597	33.321	-0.16565					35	17	3	0	0	0	1.0665	1	2310	2310		37.159	6.8414	1	867450			15735	1818;17643	11186	11206	17021	17021					0.06478350685517853
FGSLMSATDPV	11	Unmodified	_FGSLMSATDPV_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.769287109375	2	562.768257	1123.52196	-0.3539	-0.00019916	2.329	0.0013107	1.9751	0.0011115	562.7695223375962	63.026	0.53812	62.842	62.618	63.157	-0.18386					34	13	4	0	0	0	0.95124	1	7117	7117		47.657	1.6851	1	1191600			15736	9072	11187	11207	17022	17022					-0.03485930736565024
FGTGFVPPPHP	11	Unmodified	_FGTGFVPPPHP_					0	0	0		ENSG00000109208|ENST00000226460|SMR3A	ENSG00000109208|ENST00000226460|SMR3A	ENSG00000109208|ENST00000226460|SMR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8193359375	2	576.795466	1151.57638	0.56193	0.00032412	1.4007	0.0008079	1.9626	0.001132	576.7960237510041	18.973	0.24693	18.812	18.589	18.836	-0.16079					8	4	2	0	0	0	0.024776	1	349	349		20.947	0	1	18702			15737	2968	11188	11208	17023	17023					0.006654491971630705
FGTGQASKL	9	Unmodified	_FGTGQASKL_					0	0	0			REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7445983886719	2	454.745442	907.476331	0.6119	0.00027826	-1.9362	-0.0008805	-1.3243	-0.00060224	454.74447025012137	101.61	1.8033	101.48	100.73	102.53	-0.13157					101	41	4	0	0	0	0.94809	1	12672	12672		29.15	2.3535	1	2784600	+		15738	25085	11189	11209	17024	17024					0.01889211863363016
FGTHGMMLTP	10	Unmodified	_FGTHGMMLTP_					0	0	0		nc|ENSG00000136826|O43474|KLF4	nc|ENSG00000136826|O43474|KLF4	nc|ENSG00000136826|O43474|KLF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3168334960938	2	546.254262	1090.49397	-0.31594	-0.00017258	1.9767	0.0010798	1.6607	0.00090718	546.2549191940135	87.286	0.62401	87.107	86.781	87.405	-0.17874					20	14	2	0	0	0	0.03519	1	10586	10586		29.15	4.9468	1	61776			15739	18308	11190	11210	17025	17025					-0.04765532197620814
FGTIQNKVLI	10	Unmodified	_FGTIQNKVLI_					0	0	0			REV__MER5A_dup15478|chr7:93810282-93810359:-|2.623389915278092|0.0264533532187904|6.63|478.0|3|3|sense	REV__MER5A_dup15478|chr7:93810282-93810359:-|2.623389915278092|0.0264533532187904|6.63|478.0|3|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.8091430664062	2	566.839874	1131.66519	-0.93752	-0.00053142	-0.28507	-0.00016159	-1.2226	-0.00069301	566.8394055016777	33.681	0.45107	33.681	33.521	33.972	0					19	11	2	0	0	0	0.03519	1	2492	2492		27.882	0	1	92162	+		15740	36371	11191	11211	17026	17026					0.10462864436840391
FGTNTRLP	8	Unmodified	_FGTNTRLP_					0	0	0			REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.2455749511719	2	453.245609	904.476666	0.87747	0.00039771	-0.76684	-0.00034757	0.11063	5.0144E-05	453.24508787350436	51.504	0.71095	51.391	51.127	51.838	-0.11354					49	18	4	0	0	0	0.6248	2	5293	5293;5306		73.975	20.623	1	1839700	+		15741	36036	11192	11212	17027;17028	17027					0.020606315832196742
FGTNTRLP	8	Unmodified	_FGTNTRLP_					0	0	0			REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.245849609375	2	453.245609	904.476666	-1.5013	-0.00068045	1.4974	0.00067869	-0.0038969	-1.7662E-06	453.2461223741257	51.797	1.0424	51.528	51.012	52.054	-0.26903					63	27	4	0	0	0	0.56592	2	5327	5327;5340		79.451	24.67	1	2528000	+		15742	36036	11192	11212	17029;17030	17029					0.020606315832196742
FGTNTRLP	8	Unmodified	_FGTNTRLP_					0	0	0			REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.2456970214844	2	453.245609	904.476666	0.96877	0.00043909	-1.1915	-0.00054006	-0.22277	-0.00010097	453.24491552640524	51.578	0.86383	51.394	51.099	51.963	-0.18405					66	22	4	0	0	0	0.68164	1	5308	5308		68.787	14.022	1	3006400	+		15743	36036	11192	11212	17031	17031					0.020606315832196742
FGTNTRLP	8	Unmodified	_FGTNTRLP_					0	0	0			REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	453.245609	904.476666	0.87747	0.00039771	-0.76684	-0.00034757	0.11063	5.0144E-05	453.24508787350436	51.504	0.71095	51.391	51.127	51.838	-0.11354	-0.046657	-0.00078704	NaN	79.451	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839700	+		15744	36036	11192	11212							0.020606315832196742
FGTNTRLP	8	Unmodified	_FGTNTRLP_					0	0	0			REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	453.245609	904.476666	-1.5013	-0.00068045	1.4974	0.00067869	-0.0038969	-1.7662E-06	453.2461223741257	51.797	1.0424	51.528	51.012	52.054	-0.26903	0.090132	0.0012655	NaN	79.451	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2528000	+		15745	36036	11192	11212							0.020606315832196742
FGTNTRLP	8	Unmodified	_FGTNTRLP_					0	0	0			REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	REV__FER1L5|p.S1939G|1|0.26|ENSG00000249715|chr2:96703538-96703538|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	453.245609	904.476666	0.96877	0.00043909	-1.1915	-0.00054006	-0.22277	-0.00010097	453.24491552640524	51.578	0.86383	51.394	51.099	51.963	-0.18405	-0.043475	-0.001172	NaN	79.451	66	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3006400	+		15746	36036	11192	11212							0.020606315832196742
FGTPTRNL	8	Unmodified	_FGTPTRNL_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.2453918457031	2	453.245609	904.476666	0.96877	0.00043909	-1.1915	-0.00054006	-0.22277	-0.00010097	453.24491552640524	51.578	0.86383	51.394	51.099	51.963	-0.18405					66	22	4	0	0	0	0.71833	1	5297	5297		65.803	2.4969	1	3006400	+		15747	21336	11193	11213	17032	17032					0.020606315832424116
FGTRDLISKN	10	Unmodified	_FGTRDLISKN_					0	0	0		ENSG00000253148|ENST00000417209|RGS21	ENSG00000253148|ENST00000417209|RGS21	ENSG00000253148|ENST00000417209|RGS21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.2916259765625	2	575.814387	1149.61422	-0.15277	-8.7969E-05	3.94	0.0022687	3.7872	0.0021807	575.8167209171152	82.385	0.69086	82.204	81.814	82.505	-0.18079					22	15	2	0	0	0	0.03519	1	9905	9905		44.377	16.495	1	99663			15748	10856	11194	11214	17033	17033					0.04539915392001603
FGTVSQSIEL	10	Unmodified	_FGTVSQSIEL_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.314453125	2	540.782222	1079.54989	-0.30997	-0.00016762	-1.1923	-0.00064477	-1.5023	-0.0008124	540.7814937656333	72.751	1.2323	72.486	72.213	73.445	-0.26479					60	29	3	0	0	0	0.03519	1	8611	8611		93.143	13.692	1	1764900	+		15749	20267	11195	11215	17034	17034					0.013297155152031337
FGTYSQNQPRP	11	Unmodified	_FGTYSQNQPRP_					0	0	0		FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.8113403320312	2	647.812376	1293.6102	-2.445	-0.0015839	0.48148	0.00031191	-1.9635	-0.001272	647.8127220537594	62.792	1.6359	62.571	62.237	63.873	-0.22097					94	43	4	0	0	0	0.99553	1	7101	7101		37.812	2.6595	1	14041000			15750	8701	11196	11216	17035	17035					-0.024861741017275563
FGVPQPWY	8	Unmodified	_FGVPQPWY_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2625732421875	2	497.245078	992.475603	-1.1375	-0.00056561	2.0181	0.0010035	0.88062	0.00043788	497.2453588557624	48.577	0.21098	48.301	48.222	48.433	-0.27598					6	5	2	0	0	0	0.027866	1	4811	4811		57.453	19.641	1	99856			15751	7759	11197	11217	17036	17036					-0.020935827856760625
FGVRTVVKV	9	Unmodified	_FGVRTVVKV_					0	0	0		ENST00000586962.1_1_19:36507796-36536816:+|nuORF	ENST00000586962.1_1_19:36507796-36536816:+|nuORF	ENST00000586962.1_1_19:36507796-36536816:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.277099609375	2	502.816202	1003.61785	0.83581	0.00042026	1.7775	0.00089374	2.6133	0.001314	503.3202157806652	64.166	0.88773	64.212	63.975	64.862	0.045502					43	23	4	0	0	0	0.024319	1	7533	7533		39.253	0	1	418230			15752	17259	11198	11218	17037	17037					0.11618629956512905
FGVVGRERF	9	Unmodified	_FGVVGRERF_					0	0	0		ENST00000380262.7_1_17:7835739-7835787:+|nuORF	ENST00000380262.7_1_17:7835739-7835787:+|nuORF	ENST00000380262.7_1_17:7835739-7835787:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.79052734375	2	533.793258	1065.57196	1.6266	0.00086825	-4.1539	-0.0022173	-2.5273	-0.0013491	533.7908980514418	19.78	1.121	19.846	19.488	20.609	0.066195					55	22	4	0	0	0	0.4752	1	440	440		60.972	3.1607	1	470660			15753	13303	11199	11219	17038	17038					0.04179984774282275
FGWKDQRKL	9	Unmodified	_FGWKDQRKL_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3271484375	2	589.327465	1176.64038	-0.75504	-0.00044497	0.78805	0.00046442	0.033011	1.9454E-05	589.3278263228501	49.996	0.82357	49.716	49.397	50.221	-0.27977					61	21	4	0	0	0	0.72494	1	5047	5047		44.377	0	1	2644400			15754	13377	11200	11220	17039	17039					0.05912229354112242
FGWKDQRKL	9	Unmodified	_FGWKDQRKL_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	589.327465	1176.64038	-1.347	-0.00079382	1.1374	0.00067029	-0.2096	-0.00012353	589.3280262905404	49.722	1.1449	49.722	49.399	50.544	0	0.03137	0.00069915	NaN	44.377	82	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1880000			15755	13377	11200	11220							0.05912229354112242
FGWKDQRKL	9	Unmodified	_FGWKDQRKL_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	589.327465	1176.64038	-0.92937	-0.0005477	0.65034	0.00038326	-0.27903	-0.00016444	589.3277727236226	49.957	1.2759	49.806	49.445	50.721	-0.1512	0.11521	0.0001251	NaN	44.377	84	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1673100			15756	13377	11200	11220							0.05912229354112242
FGWKDQRKL	9	Unmodified	_FGWKDQRKL_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	589.327465	1176.64038	-0.13219	-7.7902E-05	-0.10066	-5.9325E-05	-0.23285	-0.00013723	589.3272952757136	49.606	1.0182	49.68	49.352	50.37	0.074192	-0.01097	-0.00076008	NaN	44.377	73	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1520900			15757	13377	11200	11220							0.05912229354112242
FGWKDQRKL	9	Unmodified	_FGWKDQRKL_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.327465	1176.64038	-0.30556	-0.00018007	0.48034	0.00028308	0.17478	0.000103	589.3276738055074	49.684	0.71416	49.579	49.296	50.011	-0.10558	-0.11221	-7.5274E-05	NaN	44.377	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2777400			15758	13377	11200	11220							0.05912229354112242
FGWKDQRKL	9	Unmodified	_FGWKDQRKL_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	589.327465	1176.64038	-0.22841	-0.00013461	0.31317	0.00018456	0.084756	4.9949E-05	589.3275631662372	49.823	0.8649	49.642	49.307	50.172	-0.18071	-0.048637	-0.00027231	NaN	44.377	63	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2475000			15759	13377	11200	11220							0.05912229354112242
FGYDLNQPR	9	Unmodified	_FGYDLNQPR_					0	0	0		nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.2738647460938	2	555.272355	1108.53016	-0.22298	-0.00012381	-0.15601	-8.6629E-05	-0.37899	-0.00021044	555.2721505352079	36.55	0.9672	36.344	35.987	36.954	-0.20518					75	24	4	0	0	0	0.56934	1	2866	2866		54.776	3.4409	1	5506800			15760	3460	11201	11221	17040	17040					-0.019766157048934474
FGYDLNQPR	9	Unmodified	_FGYDLNQPR_					0	0	0		nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.274169921875	2	555.272355	1108.53016	1.2534	0.000696	-1.8737	-0.0010404	-0.62023	-0.0003444	555.2711918850518	36.35	1.2294	36.152	35.742	36.972	-0.19829					79	31	4	0	0	0	0.29158	1	2836	2836		76.774	1.7308	1	4536900			15761	3460	11201	11221	17041	17041					-0.019766157048934474
FGYPSRPGI	9	Unmodified	_FGYPSRPGI_					0	0	0			REV__ENSG00000119147|ENST00000238044|ECRG4	REV__ENSG00000119147|ENST00000238044|ECRG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2625732421875	2	497.261259	992.507966	-0.59944	-0.00029808	3.7068	0.0018432	3.1073	0.0015452	497.26295675594787	48.648	6.2116	48.373	45.762	51.974	-0.27598					392	167	4	0	0	0	0.55828	1	4811	4811		55.504	0.60963	1	7013000	+		15762	22443	11202	11222	17042	17042					0.011412046173404633
FHAPQTSSL	9	Unmodified	_FHAPQTSSL_					0	0	0			REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.78961181640625	2	494.248349	986.482145	0.58604	0.00028965	3.0141	0.0014897	3.6002	0.0017794	494.24955482179854	88.252	0.58592	88.225	87.89	88.476	-0.027657					18	13	2	0	0	0	0.0242	1	11116	11116		79.713	26.361	1	88633	+		15763	37370	11203	11223	17043	17043					-0.011636896249456186
FHFDKTENL	9	Unmodified	_FHFDKTENL_					0	0	0			REV__ENST00000572017.1_1_16:10958826-10982354:-|nuORF	REV__ENST00000572017.1_1_16:10958826-10982354:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8428955078125	2	575.780013	1149.54547	-0.15779	-9.0851E-05	0.16017	9.2223E-05	0.0023814	1.3711E-06	575.7801416436064	88.052	0.52554	87.915	87.707	88.232	-0.13744					30	12	3	0	0	0	0.024447	1	10738	10738		25.574	7.312	1	172790	+		15764	35416	11204	11224	17044	17044					-0.023317489077271603
FHFLFQAF	8	Unmodified	_FHFLFQAF_					0	0	0		ENST00000539240.5_1_12:9102776-9147745:+|nuORF;ENST00000544226.5_1_12:9102776-9161616:+|nuORF	ENST00000539240.5_1_12:9102776-9147745:+|nuORF	ENST00000539240.5_1_12:9102776-9147745:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7671508789062	2	528.76872	1055.52289	-0.36441	-0.00019269	-2.5343	-0.00134	-2.8987	-0.0015327	528.7667974836498	65.885	1.212	65.643	65.126	66.338	-0.24144					105	29	5	0	0	0	0.58212	2	7535	7535;7544		77.944	12.478	1	1834900			15765	16399	11205	11225	17045;17046	17045					-0.002653035146977345
FHFLFQAF	8	Unmodified	_FHFLFQAF_					0	0	0		ENST00000539240.5_1_12:9102776-9147745:+|nuORF;ENST00000544226.5_1_12:9102776-9161616:+|nuORF	ENST00000539240.5_1_12:9102776-9147745:+|nuORF	ENST00000539240.5_1_12:9102776-9147745:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7662353515625	2	528.76872	1055.52289	-1.2629	-0.00066777	-1.5776	-0.00083417	-2.8404	-0.0015019	528.7672222256949	65.811	1.2847	65.598	65.094	66.378	-0.21328					108	31	5	0	0	0	0.9224	1	7532	7532		49.211	7.7842	1	1892800			15766	16399	11205	11225	17047	17047					-0.002653035146977345
FHHQPLFL	8	Unmodified	_FHHQPLFL_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7770385742188	2	519.779619	1037.54469	-1.7284	-0.00089838	-2.5108	-0.001305	-4.2391	-0.0022034	519.7780658673449	29.794	0.97864	29.794	29.447	30.426	0					57	23	4	0	0	0	0.61897	1	1862	1862		74.517	3.1387	1	1235300	+		15767	20192	11206	11226	17048	17048					0.02741501233890631
FHKGSVVNW	9	Unmodified	_FHKGSVVNW_					0	0	0			REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.2786865234375	2	537.279983	1072.54541	1.1324	0.00060843	-3.5579	-0.0019116	-2.4254	-0.0013031	537.2779333264632	24.783	0.48143	24.603	24.374	24.855	-0.18089					27	10	4	0	0	0	0.35646	1	1089	1089		68.787	1.2932	1	825010	+		15768	31030	11207	11227	17049	17049					0.012042958829397321
FHKGSVVNW	9	Unmodified	_FHKGSVVNW_					0	0	0			REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	537.279983	1072.54541	-1.7031	-0.00091504	-0.84325	-0.00045306	-2.5463	-0.0013681	537.2795236073608	24.726	0.71023	24.679	24.398	25.108	-0.047146	0.043616	0.0013834	NaN	68.787	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	787200	+		15769	31030	11207	11227							0.012042958829397321
FHKGSVVNW	9	Unmodified	_FHKGSVVNW_					0	0	0			REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	537.279983	1072.54541	-0.64344	-0.00034571	-1.8415	-0.00098942	-2.485	-0.0013351	537.2788359831001	24.913	0.52416	24.686	24.451	24.975	-0.22683	0.050847	0.00031066	NaN	68.787	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910880	+		15770	31030	11207	11227							0.012042958829397321
FHKGSVVNW	9	Unmodified	_FHKGSVVNW_					0	0	0			REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	537.279983	1072.54541	1.1324	0.00060843	-3.5579	-0.0019116	-2.4254	-0.0013031	537.2779333264632	24.783	0.48143	24.603	24.374	24.855	-0.18089	-0.032476	-0.0015337	NaN	68.787	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825010	+		15771	31030	11207	11227							0.012042958829397321
FHKLGETLK	9	Unmodified	_FHKLGETLK_					0	0	0			REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2880859375	2	536.811116	1071.60768	-1.1414	-0.00061271	0.23586	0.00012661	-0.90553	-0.0004861	536.8114090934502	65.205	0.98228	64.952	64.742	65.724	-0.25251					44	23	4	0	0	0	0.024466	1	7536	7536		47.657	14.845	1	989670	+		15772	31760	11208	11228	17050	17050					0.07474022231258459
FHKLGETLK	9	Unmodified	_FHKLGETLK_					0	0	0			REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.811116	1071.60768	-1.5848	-0.00085076	0.57989	0.00031129	-1.005	-0.00053947	536.8118399344972	64.98	0.5702	64.98	64.69	65.26	0	0.0064011	-4.4628E-05	NaN	39.253	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1701400	+		15773	31760	11208	11228							0.07474022231258459
FHKLGETLK	9	Unmodified	_FHKLGETLK_					0	0	0			REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.811116	1071.60768	-1.1167	-0.00059947	1.188	0.00063776	0.071324	3.8287E-05	536.8118233591103	65.006	0.60915	65.044	64.78	65.389	0.037384	0.069698	0.0006083	NaN	39.253	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1365400	+		15774	31760	11208	11228							0.07474022231258459
FHKLGETLK	9	Unmodified	_FHKLGETLK_					0	0	0			REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.811116	1071.60768	-0.72683	-0.00039017	0.07551	4.0535E-05	-0.65132	-0.00034963	536.8111588262756	65.18	0.69376	64.946	64.728	65.421	-0.2345	-0.028163	-0.00058614	NaN	39.253	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671360	+		15775	31760	11208	11228							0.07474022231258459
FHKLGETLK	9	Unmodified	_FHKLGETLK_					0	0	0			REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	REV__ENST00000396990.6_1_9:34125177-34127354:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.811116	1071.60768	-1.5907	-0.00085391	0.71912	0.00038603	-0.87159	-0.00046788	536.8116406005112	65.175	0.52856	64.973	64.697	65.226	-0.20254	-0.0010202	0.00010485	NaN	39.253	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866700	+		15776	31760	11208	11228							0.07474022231258459
FHKLVTEL	8	Unmodified	_FHKLVTEL_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.78497314453125	2	493.78711	985.559667	-0.58403	-0.00028839	-4.3111	-0.0021287	-4.8951	-0.0024171	493.78497956063717	27.472	1.4359	27.23	26.488	27.924	-0.24217					79	33	6	0	0	0	0.68535	1	1516	1516		68.485	2.6815	1	5263700		+	15777	492	11209	11229	17051	17051					0.06630948311226348
FHKPDESEKY	10	Unmodified	_FHKPDESEKY_					0	0	0			REV__ENST00000578527.1_1_17:65549676-65688690:+|nuORF	REV__ENST00000578527.1_1_17:65549676-65688690:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7404479980469	3	427.203299	1278.58807	-0.31095	-0.00013284	-1.6266	-0.00069487	-1.9375	-0.00082771	427.2026514105604	22.52	0.78485	22.334	22	22.784	-0.18539					33	16	4	0	0	0	0.03519	1	796	796		46.457	12.37	1	163920	+		15778	24947	11210	11230	17052	17052					-0.04008398570135796
FHKQNKML	8	Unmodified	_FHKQNKML_					0	0	0		PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant;ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN	PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant	PTEN|p.G293Vfs*13|1|0.42|ENSG00000171862|chr10:87960969-87960972|GGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2582397460938	2	523.284211	1044.55387	-1.1595	-0.00060672	3.0783	0.0016108	1.9188	0.0010041	523.285750386144	24.675	0.57883	24.675	24.385	24.964	0					17	12	2	0	0	0	0.027866	1	1125	1125		40.573	0	1	115250			15779	8209	11211	11231	17053	17053					0.03337526527934642
FHLGVKVTD	9	Unmodified	_FHLGVKVTD_					0	0	0			REV__ENST00000478946.1_1_2:74071889-74072120:+|nuORF	REV__ENST00000478946.1_1_2:74071889-74072120:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	508.2785949707031	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.33	1	100.2	99.702	100.7	-0.12504								0	0	0	0.56622	1	12455	12455		44.117	6.9577	1		+		15780	33383	11212	11232	17054	17054					0.04313760305853975
FHLISPLR	8	Unmodified	_FHLISPLR_					0	0	0			REV__ENST00000460500.1_1_1:85123956-85128195:-|nuORF	REV__ENST00000460500.1_1_1:85123956-85128195:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.79571533203125	2	491.795269	981.575986	-0.63498	-0.00031228	1.8996	0.00093421	1.2646	0.00062193	491.79600483017987	47.5	1.5976	47.404	46.295	47.893	-0.096649					123	43	5	0	0	0	1.0574	1	4673	4673		26.796	2.5934	1	5430200	+		15781	32849	11213	11233	17055	17055					0.08446074267988024
FHLISPLR	8	Unmodified	_FHLISPLR_					0	0	0			REV__ENST00000460500.1_1_1:85123956-85128195:-|nuORF	REV__ENST00000460500.1_1_1:85123956-85128195:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7947998046875	2	491.795269	981.575986	0.13012	6.3993E-05	0.85662	0.00042128	0.98674	0.00048528	491.79557204432604	48.3	5.1977	48.113	47.902	53.099	-0.18684					252	137	4	0	0	0	1.0133	1	4771	4771		35.201	6.9464	1	3829000	+		15782	32849	11213	11233	17056	17056					0.08446074267988024
FHLISPLR	8	Unmodified	_FHLISPLR_					0	0	0			REV__ENST00000460500.1_1_1:85123956-85128195:-|nuORF	REV__ENST00000460500.1_1_1:85123956-85128195:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7956848144531	2	491.795269	981.575986	-0.043829	-2.1555E-05	1.219	0.00059949	1.1752	0.00057794	491.79569659030346	55.146	1.8896	54.94	54.318	56.207	-0.20613					161	51	4	0	0	0	0.96719	1	5886	5886		42.474	5.446	1	3172100	+		15783	32849	11213	11233	17057	17057					0.08446074267988024
FHLISRPQS	9	Unmodified	_FHLISRPQS_					0	0	0		ENST00000489288.6_1_12:2997356-2997404:+|nuORF	ENST00000489288.6_1_12:2997356-2997404:+|nuORF	ENST00000489288.6_1_12:2997356-2997404:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.798828125	2	542.79854	1083.58253	-1.0895	-0.00059136	1.467	0.0007963	0.37757	0.00020494	542.7991243267224	32.001	0.59481	31.843	31.569	32.163	-0.15772					33	13	3	0	0	0	0.72875	1	2154	2154		44.117	9.9443	1	1371200			15784	15402	11214	11234	17058	17058					0.04407967428710435
FHLLLRSP	8	Unmodified	_FHLLLRSP_					0	0	0		ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.795654296875	2	491.795269	981.575986	-0.13059	-6.4225E-05	1.1712	0.00057601	1.0406	0.00051178	491.79566540234646	48.367	1.8457	48.367	48.174	50.02	0					125	51	4	0	0	0	1.0133	2	4930	4930;4939		35.201	1.6851	1	5126900			15785	15284	11215	11235	17059;17060	17059					0.08446074267988024
FHLLLRSP	8	Unmodified	_FHLLLRSP_					0	0	0		ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.79522705078125	2	491.795269	981.575986	-0.44006	-0.00021642	1.4995	0.00073743	1.0594	0.00052102	491.7957949388126	48.558	1.9044	48.405	48.159	50.064	-0.15277					86	52	4	0	0	0	1.0574	1	4931	4931		26.796	2.5934	1	4613600			15786	15284	11215	11235	17061	17061					0.08446074267988024
FHLLLRSP	8	Unmodified	_FHLLLRSP_					0	0	0		ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7962341308594	2	491.795269	981.575986	-0.88971	-0.00043755	2.087	0.0010264	1.1973	0.00058883	491.79612149361634	47.571	1.5221	47.63	46.587	48.109	0.059097					127	43	4	0	0	0	0.81662	3	4796	4736;4772;4796		57.811	4.3703	1	6614300			15787	15284	11215	11235	17062;17063;17064	17064					0.08446074267988024
FHLLLRSP	8	Unmodified	_FHLLLRSP_					0	0	0		ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2973327636719	2	491.795269	981.575986	-0.15145	-7.4485E-05	1.313	0.00064572	1.1615	0.00057124	491.7958080246407	47.771	1.5597	47.495	46.483	48.043	-0.27598					128	42	5	0	0	0	1.0239	3	4680	4680;4687;4759		33.516	8.0654	1	5590000			15788	15284	11215	11235	17065;17066;17067	17065					0.08446074267988024
FHLLLRSP	8	Unmodified	_FHLLLRSP_					0	0	0		ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.7956848144531	2	491.795269	981.575986	-0.55332	-0.00027212	1.5042	0.00073978	0.95092	0.00046766	491.7958689020097	48.547	2.1449	48.271	48.004	50.149	-0.27598					170	57	4	0	0	0	1.0017	2	4794	4794;4884		37.028	1.8278	1	3311200			15789	15284	11215	11235	17068;17069	17068					0.08446074267988024
FHLLLRSP	8	Unmodified	_FHLLLRSP_					0	0	0		ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.79595947265625	2	491.795269	981.575986	-0.021829	-1.0736E-05	1.1922	0.00058632	1.1704	0.00057558	491.79567731175905	55.087	1.7912	54.856	54.351	56.142	-0.23087					149	49	4	0	0	0	1.0017	1	5899	5899		37.028	0	1	2622000			15790	15284	11215	11235	17070	17070					0.08446074267988024
FHLLRTPL	8	Unmodified	_FHLLRTPL_					0	0	0		ENST00000490164.1_1_10:92982504-92982606:+|nuORF	ENST00000490164.1_1_10:92982504-92982606:+|nuORF	ENST00000490164.1_1_10:92982504-92982606:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.8037109375	2	498.803094	995.591636	0.48095	0.0002399	0.55044	0.00027456	1.0314	0.00051446	498.80328376618695	53.002	1.465	52.743	52.326	53.791	-0.25838					117	39	6	0	0	0	1.0574	1	5523	5523		26.796	3.7536	1	22222000			15791	15427	11216	11236	17071	17071					0.09366360785031702
FHLPLTLR	8	Unmodified	_FHLPLTLR_					0	0	0			REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF	REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.80389404296875	2	498.803094	995.591636	-0.50951	-0.00025414	1.3025	0.00064967	0.79295	0.00039552	498.8036589675882	52.964	1.3147	52.817	52.607	53.921	-0.14723					67	35	2	0	0	0	1.0574	1	5738	5738		26.796	0	1	12483000	+		15792	35727	11217	11237	17072	17072					0.09366360785043071
FHLRRLYRDRC	11	Unmodified	_FHLRRLYRDRC_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.7786865234375	3	512.277249	1533.80992	1.5002	0.0007685	0.99167	0.00050801	2.4918	0.0012765	512.2778839402838	16.834	0.57316	16.68	16.485	17.058	-0.15376					19	11	3	0	0	0	0.024882	1	137	137		12.433	6.734	1	101520	+		15793	25917	11218	11238	17073	17073					0.0643660236503365
FHLWEDLKL	9	Unmodified	_FHLWEDLKL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.88616943359375	3	400.885241	1199.63389	1.048	0.00042012	1.9819	0.0007945	3.0298	0.0012146	400.88600524140026	54.997	1.2636	54.766	54.459	55.723	-0.23087					100	35	5	0	0	0	0.72494	2	5866	5866;5891		44.377	14.166	1	11488000	+		15794	20119	11219	11239	17074;17075	17074					0.04206291402738316
FHLWEDLKL	9	Unmodified	_FHLWEDLKL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.8861083984375	3	400.885241	1199.63389	0.084969	3.4063E-05	3.1558	0.0012651	3.2408	0.0012992	400.8864471960518	54.981	1.3568	54.775	54.468	55.825	-0.20613					107	37	5	0	0	0	0.89532	1	5853	5853		32.751	2.1817	1	9822100	+		15795	20119	11219	11239	17076	17076					0.04206291402738316
FHMAVVNQYRM	11	Unmodified	_FHMAVVNQYRM_					0	0	0		INHBB|p.T352M|1|0.29|ENSG00000163083|chr2:120349705-120349705|C/T|missense_variant	INHBB|p.T352M|1|0.29|ENSG00000163083|chr2:120349705-120349705|C/T|missense_variant	INHBB|p.T352M|1|0.29|ENSG00000163083|chr2:120349705-120349705|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.8935241699219	3	465.893525	1394.65875	-0.26645	-0.00012414	-0.58628	-0.00027314	-0.85273	-0.00039728	465.8931650284093	30.079	1.1423	29.93	29.584	30.727	-0.14952					77	26	4	0	0	0	1.0371	1	1891	1891		28.577	0	1	1939100			15796	17768	11220	11240	17077	17077					-0.022797200578452248
FHNRTFLKEL	10	Unmodified	_FHNRTFLKEL_					0	0	0		nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.57806396484375	3	435.575178	1303.70371	1.4143	0.00061602	4.4737	0.0019486	5.888	0.0025646	435.57704527423255	110.37	0.77484	110.37	110.08	110.86	0					74	23	4	0	0	0	1.1165	1	14054	14054		19.263	0.73163	1	451640			15797	1161	11221	11241	17078	17078					0.06400170071333378
FHPVLPALTSV	11	Unmodified	_FHPVLPALTSV_					0	0	0		ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000466995.5_1_X:48751014-48751375:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	590.2747192382812	2	590.839874	1179.66519	-1.2642	-0.00074691	1.6203	0.00095732	0.35611	0.0002104	590.8404412177618	89.725	0.38828	89.562	89.3	89.688	-0.1626					12	8	2	0	0	0	0.024738	1	10943	10943		34.173	3.6689	1	63366			15798	14825	11222	11242	17079	17079					0.08254864436821663
FHRDNIGR	8	Unmodified	_FHRDNIGR_					0	0	0			REV__RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	REV__RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3117370605469	2	507.765032	1013.51551	0.77953	0.00039582	3.449	0.0017513	4.2285	0.0021471	507.76656933637634	62.859	1.196	62.913	62.679	63.875	0.054104					44	31	3	0	0	0	0.027866	1	7322	7322		37.159	0	1	620580	+		15799	27613	11223	11243	17080	17080					0.009293569376154664
FHRGELISV	9	Unmodified	_FHRGELISV_					0	0	0			REV__ENSG00000168944|ENST00000306467|CEP120	REV__ENSG00000168944|ENST00000306467|CEP120	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2511596679688	2	529.293091	1056.57163	1.1235	0.00059468	-1.9979	-0.0010575	-0.87438	-0.0004628	529.29193476015	51.409	0.80357	51.226	50.832	51.635	-0.18295					23	20	2	0	0	0	0.02435	1	5279	5279		60.972	11.53	1	323210	+		15800	26305	11224	11244	17081	17081					0.04560565054430299
FHRGTLLCL	9	Unmodified	_FHRGTLLCL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|11|1|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|11|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2899169921875	2	530.292037	1058.56952	-1.3633	-0.00072294	-2.0809	-0.0011035	-3.4442	-0.0018264	530.2906957799896	25.121	1.2345	25.086	24.321	25.556	-0.034395					54	28	4	0	0	0	0.70186	1	1150	1150		45.952	1.8352	1	906650	+		15801	36262	11225	11245	17082	17082					0.04257813044955583
FHRGTLLCL	9	Unmodified	_FHRGTLLCL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|11|1|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|11|1|sense	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	530.292037	1058.56952	-1.3633	-0.00072294	-2.0809	-0.0011035	-3.4442	-0.0018264	530.2906957799896	25.121	1.2345	25.086	24.321	25.556	-0.034395	-0.00093859	0.00046544	NaN	45.952	54	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	906650	+		15802	36262	11225	11245							0.04257813044955583
FHRGTLLCL	9	Unmodified	_FHRGTLLCL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|11|1|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|11|1|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.292037	1058.56952	0.10701	5.6745E-05	-3.4313	-0.0018196	-3.3243	-0.0017628	530.2899946668729	25.023	1.3044	25.102	24.276	25.58	0.079622	0.014914	-0.00096674	NaN	45.952	55	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	860960	+		15803	36262	11225	11245							0.04257813044955583
FHRLRNISP	9	Unmodified	_FHRLRNISP_					0	0	0			REV__ENST00000531344.1_1_8:38099790-38103488:+|nuORF	REV__ENST00000531344.1_1_8:38099790-38103488:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7484741210938	2	570.325257	1138.63596	0.063951	3.6473E-05	2.8797	0.0016424	2.9437	0.0016788	570.3267441321512	69.857	0.45749	69.635	69.39	69.847	-0.22245					20	10	3	0	0	0	0.024397	1	8116	8116		47.657	13.485	1	129720	+		15804	20758	11226	11246	17083	17083					0.07218764931235455
FHRNGVVIV	9	Unmodified	_FHRNGVVIV_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7791137695312	2	520.803626	1039.5927	0.20846	0.00010857	-0.023598	-1.229E-05	0.18487	9.6279E-05	520.8041730441132	63.154	0.16567	62.895	62.835	63	-0.25824					5	3	2	0	0	0	0.024412	1	7120	7120		50.025	20.183	1	128590	+		15805	26293	11227	11247	17084	17084					0.07448575153944148
FHSLEHQESSV	11	Unmodified	_FHSLEHQESSV_					0	0	0			REV__ENSG00000146378|ENST00000367931|TAAR2	REV__ENSG00000146378|ENST00000367931|TAAR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7796325683594	3	433.87032	1298.58913	-0.65135	-0.0002826	-0.98142	-0.00042581	-1.6328	-0.00070841	434.2049087860908	48.873	0.21628	48.594	48.465	48.682	-0.27977					7	5	2	0	0	0	0.024723	1	4843	4843		28.577	10.046	1	48637	+		15806	24482	11228	11248	17085	17085					-0.04822184201248092
FHSRGLLL	8	Unmodified	_FHSRGLLL_					0	0	0			REV__ENST00000432648.7_1_1:39470599-39470797:+|nuORF	REV__ENST00000432648.7_1_1:39470599-39470797:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.77728271484375	2	471.779619	941.544686	-0.13697	-6.4618E-05	-3.4351	-0.0016206	-3.5721	-0.0016852	471.7779114719396	29.016	0.57261	29.019	28.631	29.204	0.0031376					41	13	4	0	0	0	0.93274	1	1718	1718		47.916	1.9636	1	2426600	+		15807	32388	11229	11249	17086	17086					0.07157501233916719
FHWHFVNQRRR	11	Unmodified	_FHWHFVNQRRR_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2953491210938	3	528.27987	1581.81778	-0.13886	-7.3359E-05	-4.3352	-0.0022902	-4.4741	-0.0023636	528.2774162425318	45.564	0.57303	45.608	45.214	45.787	0.043877					23	16	2	0	0	0	0.024888	1	4316	4316		6.001	4.8528	1	211920			15808	4612	11230	11250	17087	17087					0.05014497676802421
FHWHFVNQRRR	11	Unmodified	_FHWHFVNQRRR_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	528.27987	1581.81778	-0.91607	-0.00048394	-2.4797	-0.00131	-3.3958	-0.0017939	528.2788096444261	45.63	0.40921	45.63	45.375	45.784	0	0.061476	0.0019443	NaN	3.2113	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172760			15809	4612	11230	11250							0.05014497676802421
FHWHFVNQRRR	11	Unmodified	_FHWHFVNQRRR_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	528.27987	1581.81778	-0.31852	-0.00016827	-4.061	-0.0021454	-4.3795	-0.0023136	528.2775704612222	45.635	0.52029	45.539	45.257	45.777	-0.096653	-0.029969	-0.00056182	NaN	3.2113	30	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221170			15810	4612	11230	11250							0.05014497676802421
FHWHFVNQRRR	11	Unmodified	_FHWHFVNQRRR_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	528.27987	1581.81778	-0.42487	-0.00022445	-3.873	-0.002046	-4.2979	-0.0022705	528.2778519155465	45.796	0.49357	45.535	45.284	45.777	-0.26118	-0.03336	-0.00026381	NaN	3.2113	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207150			15811	4612	11230	11250							0.05014497676802421
FHWHFVNQRRR	11	Unmodified	_FHWHFVNQRRR_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	528.27987	1581.81778	-0.67358	-0.00035584	-3.2697	-0.0017273	-3.9432	-0.0020831	528.2781441830049	45.733	0.54501	45.531	45.161	45.706	-0.20226	-0.03735	0.00069237	NaN	3.2113	31	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360130			15812	4612	11230	11250							0.05014497676802421
FHWLLELT	8	Unmodified	_FHWLLELT_					0	0	0			REV__ENST00000565698.5_2_16:28109346-28109856:-|nuORF	REV__ENST00000565698.5_2_16:28109346-28109856:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8120727539062	2	529.78711	1057.55967	-0.19684	-0.00010428	-0.31278	-0.00016571	-0.50962	-0.00026999	529.7867330783369	73.514	0.67587	73.324	72.927	73.602	-0.19026					36	16	3	0	0	0	0.027866	1	8579	8579		54.765	44.499	1	478720	+		15813	35285	11231	11251	17088	17088					0.03318948311220993
FHYDYFFPMNN	11	Unmodified	_FHYDYFFPMNN_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MSMS	OPSCC_39_ClassI_Rep-2	2	499.25701904296875	3	498.876417	1493.60742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.858	1	16.711	16.211	17.211	-0.14753								0	0	0	1.615	1	95	95		10.104	1.3046	1		+		15814	36945	11232	11252	17089	17089					-0.11963765550876815
FHYHERTHTGE	11	Unmodified	_FHYHERTHTGE_					0	0	0		ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.2979736328125	3	471.88133	1412.62216	-0.82171	-0.00038775	-3.2705	-0.0015433	-4.0922	-0.001931	471.87969376293063	33.053	0.31924	32.888	32.679	32.998	-0.16565					11	7	2	0	0	0	0.024801	1	2280	2280		29.551	16.593	1	110630			15815	10920	11233	11253	17090	17090					-0.06764557358542334
FHYHERTHTGE	11	Unmodified	_FHYHERTHTGE_					0	0	0		ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	471.88133	1412.62216	7.546E-05	3.5608E-08	-3.8643	-0.0018235	-3.8642	-0.0018235	471.87978936899214	33.26	0.31557	33.06	32.855	33.171	-0.20019	0.14601	-0.00086381	NaN	12.957	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93477			15816	10920	11233	11253							-0.06764557358542334
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.7687377929688	2	537.771991	1073.52943	-0.75009	-0.00040338	2.1381	0.0011498	1.388	0.00074644	537.7723664039634	57.894	0.72539	57.716	57.169	57.895	-0.17775					32	18	2	0	0	0	0.40179	1	6356	6356		65.803	7.5733	1	725010			15817	1789	11234	11254	17091	17091					-0.004394103539425487
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.772216796875	2	537.771991	1073.52943	-0.43585	-0.00023439	0.43055	0.00023154	-0.0052994	-2.8499E-06	537.7720915210228	58.713	1.7235	58.525	57.785	59.508	-0.18795					129	42	4	0	0	0	0.033883	9	6443	6385;6408;6420;6432;6443;6456;6468;6482;6495		138.48	69.693	1	8266100			15818	1789	11234	11254	17092;17093;17094;17095;17096;17097;17098;17099;17100	17096					-0.004394103539425487
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7716674804688	2	537.771991	1073.52943	-0.26692	-0.00014354	0.6187	0.00033272	0.35178	0.00018918	537.7721499474156	58.549	2.3568	58.368	57.267	59.624	-0.18134					154	59	4	0	0	0	0.14199	9	6432	6365;6379;6388;6406;6420;6432;6443;6456;6468		101.21	42.696	1	8710200			15819	1789	11234	11254	17101;17102;17103;17104;17105;17106;17107;17108;17109	17106					-0.004394103539425487
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7718505859375	2	537.771991	1073.52943	-0.14765	-7.9401E-05	0.17274	9.2893E-05	0.025088	1.3492E-05	537.7719444586712	58.711	2.5018	58.469	57.341	59.843	-0.24165					141	62	4	0	0	0	0.062871	8	6438	6381;6403;6414;6426;6438;6449;6462;6475		123.99	54.361	1	7703000			15820	1789	11234	11254	17110;17111;17112;17113;17114;17115;17116;17117	17114					-0.004394103539425487
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.771991	1073.52943	-0.10691	-5.7495E-05	-0.01369	-7.3623E-06	-0.1206	-6.4857E-05	537.771718430577	58.461	1.312	58.461	57.796	59.108	0	0.023743	-0.00037854	NaN	138.48	70	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1288200			15821	1789	11234	11254							-0.004394103539425487
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.771991	1073.52943	-0.47406	-0.00025493	0.16808	9.0387E-05	-0.30598	-0.00016455	537.771853163337	58.634	1.1209	58.447	57.955	59.076	-0.18705	0.010259	-0.00018304	NaN	138.48	75	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1345100			15822	1789	11234	11254							-0.004394103539425487
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.771991	1073.52943	-0.68476	-0.00036824	0.22219	0.00011949	-0.46257	-0.00024876	537.7719092962553	58.26	1.1674	58.351	57.759	58.926	0.091217	-0.085916	-0.00012484	NaN	138.48	53	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487800			15823	1789	11234	11254							-0.004394103539425487
FIAADDYLDP	10	Unmodified	_FIAADDYLDP_					0	0	0			REV__ENSG00000104549|ENST00000265896|SQLE	REV__ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2779541015625	2	570.266404	1138.51826	0.61169	0.00034883	-0.68756	-0.00039209	-0.075868	-4.3265E-05	570.2664230462467	79.822	1.0019	79.575	79.195	80.197	-0.24651					80	23	5	0	0	0	0.03519	1	9549	9549		42.396	3.1433	1	660620	+		15824	21451	11235	11255	17118	17118					-0.04546277238773655
FIAAKPVIL	9	Unmodified	_FIAAKPVIL_					0	0	0			REV__ENSG00000140450|ENST00000268042|ARRDC4	REV__ENSG00000140450|ENST00000268042|ARRDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7458801269531	2	486.318046	970.621539	-0.51677	-0.00025131	-3.5945	-0.0017481	-4.1113	-0.0019994	486.31610215118974	62.231	0.28313	62.005	61.766	62.049	-0.22663					12	7	2	0	0	0	0.024436	1	7208	7208		30.504	23.31	1	122880	+		15825	24016	11236	11256	17119	17119					0.13505299730377374
FIAECDRR	8	Unmodified	_FIAECDRR_					0	0	0		nc|ENSG00000007392|Q9NQ29-2|LUC7L;nc|ENSG00000007392|Q9NQ29-3|LUC7L;ENSG00000007392|ENST00000293872|LUC7L;ENST00000490762.5_1_16:240794-277276:-|nuORF	nc|ENSG00000007392|Q9NQ29-2|LUC7L	nc|ENSG00000007392|Q9NQ29-2|LUC7L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.24755859375	2	505.247826	1008.4811	0.033969	1.7163E-05	-0.069239	-3.4983E-05	-0.03527	-1.782E-05	505.24766489496255	20.077	2.6923	19.853	19.285	21.978	-0.22344					111	54	3	0	0	0	0.94517	1	462	462		45.952	3.5558	1	386220			15826	820	11237	11257	17120	17120					-0.022802272655098932
FIAEIFKPD	9	Unmodified	_FIAEIFKPD_					0	0	0		ENST00000521383.5_1_8:104258897-104310599:-|nuORF	ENST00000521383.5_1_8:104258897-104310599:-|nuORF	ENST00000521383.5_1_8:104258897-104310599:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7911376953125	2	540.292225	1078.5699	-0.69518	-0.0003756	0.041879	2.2627E-05	-0.6533	-0.00035297	540.7904445381822	83.573	1.3309	83.483	82.872	84.203	-0.090454					48	30	3	0	0	0	0.024405	1	10350	10350		44.117	1.2525	1	306420			15827	16002	11238	11258	17121	17121					0.03375511245803864
FIAEIFKPD	9	Unmodified	_FIAEIFKPD_					0	0	0		ENST00000521383.5_1_8:104258897-104310599:-|nuORF	ENST00000521383.5_1_8:104258897-104310599:-|nuORF	ENST00000521383.5_1_8:104258897-104310599:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.292225	1078.5699	0.3054	0.00016501	-1.4813	-0.00080034	-1.1759	-0.00063533	540.790164897627	83.455	0.21577	83.244	83.092	83.308	-0.21159	-0.11969	-6.6102E-05	NaN	44.117	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62939			15828	16002	11238	11258							0.03375511245803864
FIAHLEAIVS	10	Unmodified	_FIAHLEAIVS_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.7595825195312	2	550.310949	1098.60735	-0.045583	-2.5085E-05	1.0524	0.00057914	1.0068	0.00055406	550.8130575286067	74.336	0.64048	74.061	73.917	74.558	-0.27573					24	14	2	0	0	0	0.03519	1	8746	8746		47.657	0	1	240650			15829	10221	11239	11259	17122	17122					0.06198602511403806
FIAIIFLAL	9	Unmodified	_FIAIIFLAL_					0	0	0			REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.8442077636719	2	510.828246	1019.64194	-0.28037	-0.00014322	-2.7331	-0.0013962	-3.0135	-0.0015394	510.8267405276104	76.039	0.14955	75.78	75.672	75.822	-0.25866					5	3	2	0	0	0	0.024389	1	9017	9017		39.021	0	1	100250	+		15830	36974	11240	11260	17123	17123					0.13290470390165865
FIAIPYLQAQ	10	Unmodified	_FIAIPYLQAQ_					0	0	0			REV__ENSG00000082458|ENST00000374360|DLG3	REV__ENSG00000082458|ENST00000374360|DLG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.285400390625	2	582.326599	1162.63865	0.27106	0.00015784	-2.022	-0.0011774	-1.7509	-0.0010196	582.3250798751886	85.015	0.70508	84.812	84.502	85.207	-0.20329					23	16	2	0	0	0	0.03519	1	10282	10282		23.042	0	1	50427	+		15831	20695	11241	11261	17124	17124					0.06383175545511222
FIALMKPLA	9	Unmodified	_FIALMKPLA_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.3059997558594	2	502.304081	1002.59361	1.14	0.00057263	2.3262	0.0011685	3.4662	0.0017411	502.305124242273	19.531	0.34694	19.297	19.126	19.473	-0.23345					13	6	4	0	0	0	0.67308	1	413	413		47.916	3.3845	1	163040	+		15832	27439	11242	11262	17125	17125					0.09241653478625267
FIALVNVID	9	Unmodified	_FIALVNVID_					0	0	0		ENSG00000212124|ENST00000390673|TAS2R19	ENSG00000212124|ENST00000390673|TAS2R19	ENSG00000212124|ENST00000390673|TAS2R19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2948913574219	2	502.294768	1002.57498	0.074906	3.7625E-05	-2.7263	-0.0013694	-2.6514	-0.0013318	502.29407969473186	53.819	1.2603	53.819	53.232	54.492	0					136	35	7	0	0	0	0.43973	1	5878	5878		63.306	0.32785	1	17778000			15833	10481	11243	11263	17126	17126					0.07379815108413368
FIAQKILAL	9	Unmodified	_FIAQKILAL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8289489746094	2	508.828778	1015.643	0.2097	0.0001067	0.082712	4.2086E-05	0.29241	0.00014879	508.82864289961014	71.843	1.0542	71.568	71.273	72.327	-0.27509					63	25	4	0	0	0	0.15889	1	8406	8406		97.473	1.2823	1	2210600			15834	18521	11244	11264	17127	17127					0.1358068475908567
FIAQKILAL	9	Unmodified	_FIAQKILAL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.8290100097656	2	508.828778	1015.643	0.071872	3.6571E-05	0.23629	0.00012023	0.30817	0.0001568	508.82875555153265	71.723	0.97474	71.461	71.241	72.216	-0.26199					59	23	4	0	0	0	0.10076	3	8395	8385;8395;8420		110.34	20.126	1	2359500			15835	18521	11244	11264	17128;17129;17130	17129					0.1358068475908567
FIAQKILAL	9	Unmodified	_FIAQKILAL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.8291015625	2	508.828778	1015.643	0.2111	0.00010741	-0.003012	-1.5326E-06	0.20809	0.00010588	508.82863835799895	71.648	1.142	71.442	71.139	72.281	-0.20613					66	27	4	0	0	0	0.049585	4	8362	8352;8362;8375;8389		128.86	16.045	1	2008400			15836	18521	11244	11264	17131;17132;17133;17134	17132					0.1358068475908567
FIAQPKLLL	9	Unmodified	_FIAQPKLLL_					0	0	0			REV__ENST00000519443.1_1_8:117778842-117782740:+|nuORF	REV__ENST00000519443.1_1_8:117778842-117782740:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.834228515625	2	521.836603	1041.65865	-0.6794	-0.00035454	-3.6421	-0.0019006	-4.3215	-0.0022551	521.8346325329472	69.245	1.0165	69.245	68.898	69.915	0					82	25	4	0	0	0	0.55828	1	8357	8357		55.504	2.5675	1	5249100	+		15837	34259	11245	11265	17135	17135					0.13948971276158773
FIARKFRTG	9	Unmodified	_FIARKFRTG_					0	0	0			REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3297119140625	2	548.324725	1094.6349	3.7957	0.0020813	2.9071	0.001594	6.7028	0.0036753	548.3262063682508	18.164	0.44673	18.227	18.054	18.501	0.063307					20	9	3	0	0	0	0.94809	1	215	215		29.15	1.2673	1	125710	+		15838	23739	11246	11266	17136	17136					0.09136550562334378
FIAVVFILL	9	Unmodified	_FIAVVFILL_					0	0	0		CLEC4D|p.V22F|1|0.21|ENSG00000166527|chr12:8515271-8515271|G/T|missense_variant	CLEC4D|p.V22F|1|0.21|ENSG00000166527|chr12:8515271-8515271|G/T|missense_variant	CLEC4D|p.V22F|1|0.21|ENSG00000166527|chr12:8515271-8515271|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.323974609375	2	517.836071	1033.65759	1.3473	0.00069767	3.1262	0.0016189	4.4735	0.0023165	517.8378342922472	63.802	0.28633	63.847	63.688	63.975	0.045502					9	7	2	0	0	0	0.024389	1	7379	7379		49.211	0	1	158360			15839	453	11247	11267	17137	17137					0.14210756907255018
FIAYNLKL	8	Unmodified	_FIAYNLKL_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.29083251953125	2	491.292028	980.569503	-0.60574	-0.00029759	-3.662	-0.0017991	-4.2677	-0.0020967	491.2901471375091	73.762	1.0908	73.771	73.558	74.648	0.0096512					48	25	3	0	0	0	0.52467	1	8934	8934		83.287	11.991	1	5584100	+		15840	25532	11248	11268	17138	17138					0.07844136316600725
FICAMALYL	9	Unmodified	_FICAMALYL_					0	0	0			REV__ENST00000486907.1_1_22:24225919-24226291:+|nuORF	REV__ENST00000486907.1_1_22:24225919-24226291:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.765625	2	522.766474	1043.5184	0.20292	0.00010608	-1.4498	-0.00075793	-1.2469	-0.00065184	522.7656648407353	78.816	1.1862	78.66	78.254	79.44	-0.15591					80	27	5	0	0	0	0.48384	1	9429	9429		60.404	5.5091	1	4679400	+		15841	23374	11249	11269	17139	17139					-0.0016227204412189167
FIDARPIKV	9	Unmodified	_FIDARPIKV_					0	0	0			REV__ENST00000526148.5_2_11:10829222-10829513:-|nuORF	REV__ENST00000526148.5_2_11:10829222-10829513:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2777099609375	2	529.821484	1057.62842	-0.48158	-0.00025515	0.35531	0.00018825	-0.12627	-6.6901E-05	529.8214411729253	58.02	0.46974	58.02	57.872	58.342	0					28	12	3	0	0	0	0.024307	1	6554	6554		72.879	32.101	1	1318600	+		15842	34435	11250	11270	17140	17140					0.10190612610949756
FIDARPIKV	9	Unmodified	_FIDARPIKV_					0	0	0			REV__ENST00000526148.5_2_11:10829222-10829513:-|nuORF	REV__ENST00000526148.5_2_11:10829222-10829513:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2770385742188	2	529.821484	1057.62842	-1.1651	-0.00061728	1.3839	0.00073322	0.21882	0.00011594	529.8220293262365	58.339	0.50281	58.153	57.884	58.387	-0.18599					30	13	3	0	0	0	0.024283	1	6558	6558		65.465	5.3471	1	898510	+		15843	34435	11250	11270	17141	17141					0.10190612610949756
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENST00000522311.1_1_8:103848756-103855898:-|nuORF;ENSG00000155096|ENST00000337198|AZIN1	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.2374267578125	2	522.237647	1042.46074	-0.33785	-0.00017644	0.38467	0.00020089	0.046817	2.4449E-05	522.2376999708214	63.696	1.3229	63.468	63.174	64.497	-0.22773					85	33	4	0	0	0	0.014988	3	7229	7198;7215;7229		190.52	73.614	1	4013100			15844	6453	11251	11271	17142;17143;17144	17144					-0.05879119444330172
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENST00000522311.1_1_8:103848756-103855898:-|nuORF;ENSG00000155096|ENST00000337198|AZIN1	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.2379760742188	2	522.237647	1042.46074	0.094087	4.9136E-05	-0.087061	-4.5466E-05	0.007026	3.6693E-06	522.2374432419042	63.718	1.7646	63.526	63.186	64.951	-0.19243					106	44	4	0	0	0	0.01452	3	7213	7213;7225;7238		186.09	70.63	1	4806800			15845	6453	11251	11271	17145;17146;17147	17145					-0.05879119444330172
FIDDANYSV	9	Unmodified	_FIDDANYSV_					0	0	0		ENST00000522311.1_1_8:103848756-103855898:-|nuORF;ENSG00000155096|ENST00000337198|AZIN1	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENST00000522311.1_1_8:103848756-103855898:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.2376708984375	2	522.237647	1042.46074	0.30692	0.00016029	-0.46147	-0.00024099	-0.15455	-8.071E-05	522.2372476267184	63.805	1.7378	63.547	63.201	64.938	-0.25824					121	44	5	0	0	0	0.014013	4	7223	7200;7212;7223;7237		211.39	72.563	1	5860500			15846	6453	11251	11271	17148;17149;17150;17151	17150					-0.05879119444330172
FIDKLQEET	9	Unmodified	_FIDKLQEET_					0	0	0			REV__ENSG00000177613|ENST00000331173|CSTF2T	REV__ENSG00000177613|ENST00000331173|CSTF2T	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2661743164062	2	561.787504	1121.56045	0.90714	0.00050962	-3.9485	-0.0022182	-3.0414	-0.0017086	561.7851462760291	59.999	0.76058	59.802	59.42	60.181	-0.19742					36	19	3	0	0	0	0.024323	1	6608	6608		44.117	6.3053	1	709700	+		15847	27129	11252	11272	17152	17152					0.0045369816962193
FIDPHILNL	9	Unmodified	_FIDPHILNL_					0	0	0			REV__ENST00000487229.6_1_17:12905763-12906899:-|nuORF	REV__ENST00000487229.6_1_17:12905763-12906899:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.3031616210938	2	541.305667	1080.59678	-1.3288	-0.0007193	-3.3995	-0.0018402	-4.7283	-0.0025595	541.3037392453896	47.103	0.95069	47.163	46.88	47.831	0.059097					86	27	6	0	0	0	0.6504	1	4636	4636		49.442	5.3247	1	12421000	+		15848	19844	11253	11273	17153	17153					0.059706198569983826
FIELLPLCSS	10	Unmodified	_FIELLPLCSS_					0	0	0		ENSG00000160838|ENST00000337428|LRRC71	ENSG00000160838|ENST00000337428|LRRC71	ENSG00000160838|ENST00000337428|LRRC71	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.279296875	2	561.299193	1120.58383	0.35853	0.00020124	-1.9842	-0.0011137	-1.6257	-0.00091248	561.2978054065079	85.006	0.58566	84.802	84.294	84.88	-0.20329					24	13	4	0	0	0	0.03519	1	10255	10255		34.173	9.9698	1	215320			15849	6845	11254	11274	17154	17154					0.028364206825926885
FIELVQPHL	9	Unmodified	_FIELVQPHL_					0	0	0			REV__ENSG00000254986|ENST00000531863|DPP3	REV__ENSG00000254986|ENST00000531863|DPP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.31396484375	2	548.313492	1094.61243	-1.2947	-0.00070992	-2.9849	-0.0016366	-4.2796	-0.0023466	548.3119799425222	55.988	1.3853	56.085	55.744	57.13	0.097893					116	38	5	0	0	0	0.39228	1	6180	6180		66.429	0.6261	1	29822000	+		15850	29059	11255	11275	17155	17155					0.0689090637404206
FIETCFVAY	9	Unmodified	_FIETCFVAY_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|276|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|276|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|276|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3267211914062	2	546.757161	1091.49977	-0.36484	-0.00019948	1.695	0.00092675	1.3302	0.00072727	547.2587364950094	41.206	0.30982	41.206	41.051	41.36	0					13	8	2	0	0	0	0.024183	1	3679	3679		40.573	0	1	125970			15851	17900	11256	11276	17156	17156					-0.04232110414318413
FIEYMQSD	8	Unmodified	_FIEYMQSD_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2293090820312	2	516.720775	1031.427	-0.0071175	-3.6778E-06	-1.3374	-0.00069104	-1.3445	-0.00069472	517.2226515538803	62.088	0.23094	61.831	61.628	61.859	-0.25725					7	5	2	0	0	0	0.027866	1	6960	6960		27.882	6.9353	1	105670	+		15852	24784	11257	11277	17157	17157					-0.0874586420770811
FIFKNPSF	8	Unmodified	_FIFKNPSF_					0	0	0			REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7430114746094	2	500.268553	998.522553	0.21214	0.00010613	-3.6052	-0.0018036	-3.393	-0.0016974	500.2663837119083	56.905	0.4442	56.703	56.482	56.926	-0.20208					15	11	2	0	0	0	0.027866	1	6184	6184		79.451	5.4763	1	116320	+		15853	37042	11258	11278	17158	17158					0.02323276765469018
FIFKVVVW	8	Unmodified	_FIFKVVVW_					0	0	0		ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENST00000562813.1_1_16:56531612-56532525:-|nuORF	ENST00000562813.1_1_16:56531612-56532525:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2870483398438	2	519.312764	1036.61097	0.7611	0.00039525	-3.0366	-0.0015769	-2.2755	-0.0011817	519.3112287631521	51.25	0.46221	51.138	51.012	51.475	-0.11163					17	11	2	0	0	0	0.027866	1	5257	5257		28.254	0	1	294970			15854	16851	11259	11279	17159	17159					0.09413317075950545
FIFRIYKS	8	Unmodified	_FIFRIYKS_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2959594726562	2	537.310752	1072.60695	-1.4134	-0.00075944	-0.029252	-1.5717E-05	-1.4427	-0.00077516	537.8122708810625	37.805	0.13762	37.838	37.751	37.889	0.032269					5	3	2	0	0	0	0.027866	1	3046	3046		12.207	1.9416	1	113880	+		15855	25208	11260	11280	17160	17160					0.07355227582229418
FIFRTTLAAR	10	Unmodified	_FIFRTTLAAR_					0	0	0			REV__ENST00000332050.10_1_22:29696151-29696196:+|nuORF	REV__ENST00000332050.10_1_22:29696151-29696196:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	599.3113403320312	2	598.35094	1194.68733	-1.0727	-0.00064185	-3.7118	-0.002221	-4.7845	-0.0028628	598.3493650907967	82.483	0.88499	82.509	81.859	82.744	0.025711					30	20	2	0	0	0	0.03519	1	10244	10244		19.997	0	1	112660	+		15856	30487	11261	11281	17161	17161					0.0977708890525264
FIGEDVLHI	9	Unmodified	_FIGEDVLHI_					0	0	0		ENST00000432012.1_1_1:24785381-24790633:+|nuORF;nc|ENSG00000001461|Q6P499-2|NIPAL3;ENSG00000001461|ENST00000374399|NIPAL3	ENST00000432012.1_1_1:24785381-24790633:+|nuORF	ENST00000432012.1_1_1:24785381-24790633:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3258666992188	2	521.782025	1041.5495	0.76044	0.00039678	-0.97854	-0.00051059	-0.21811	-0.0001138	521.7800184867119	82.264	0.88248	82.154	81.842	82.724	-0.11006					42	20	4	0	0	0	0.024412	1	10213	10213		50.025	14.406	1	664630			15857	718	11262	11282	17162	17162					0.030383405859993218
FIGKKNRGR	9	Unmodified	_FIGKKNRGR_					0	0	0			REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3271484375	2	538.327799	1074.64105	0.47679	0.00025667	-1.8397	-0.00099037	-1.3629	-0.0007337	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	0.92825	1	12481	12481		30.504	0	1	21461000	+		15858	24491	11263	11283	17163	17163					0.10671068793840277
FIGKSDKAS	9	Unmodified	_FIGKSDKAS_					0	0	0			REV__ENSG00000105989|ENST00000265441|WNT2	REV__ENSG00000105989|ENST00000265441|WNT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7586975097656	2	476.758549	951.502546	0.83708	0.00039909	-2.2271	-0.0010618	-1.39	-0.0006627	476.7575817068251	100.79	1.3062	100.66	100.28	101.58	-0.13364					59	31	2	0	0	0	0.80003	1	12523	12523		39.253	0.44669	1	172540	+		15859	21586	11264	11284	17164	17164					0.0248548103485291
FIGMKEKIP	9	Unmodified	_FIGMKEKIP_					0	0	0			REV__TBC1D12-HELLS|1|fusion	REV__TBC1D12-HELLS|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8025512695312	2	531.804445	1061.59434	-0.3746	-0.00019921	-4.1281	-0.0021953	-4.5027	-0.0023945	531.8026838334287	79.256	1.2832	79.274	78.946	80.229	0.018669					63	30	3	0	0	0	0.35646	1	9764	9764		68.787	10.005	1	727060	+		15860	37677	11265	11285	17165	17165					0.06600448127687741
FIGMKEKIP	9	Unmodified	_FIGMKEKIP_					0	0	0			REV__TBC1D12-HELLS|1|fusion	REV__TBC1D12-HELLS|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.804445	1061.59434	-0.23751	-0.00012631	-5.6727	-0.0030168	-5.9102	-0.0031431	531.8022685045735	79.161	0.32863	78.942	78.873	79.202	-0.21923	-0.26449	-0.0020775	NaN	68.787	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34981	+		15861	37677	11265	11285							0.06600448127687741
FIGSKESGY	9	Unmodified	_FIGSKESGY_					0	0	0		nc|ENSG00000105963|O75689-3|ADAP1;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000478000.5_1_7:938560-944975:-|nuORF	nc|ENSG00000105963|O75689-3|ADAP1	nc|ENSG00000105963|O75689-3|ADAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2427978515625	2	494.242732	986.470912	-0.13426	-6.6357E-05	0.012603	6.2288E-06	-0.12166	-6.0128E-05	494.24252785897994	49.125	0.78949	48.943	48.667	49.456	-0.18206					53	20	4	0	0	0	0.67308	1	4927	4927		47.916	1.9636	1	3321500			15862	2739	11266	11286	17166	17166					-0.022865117190917772
FIGSVSKEAP	10	Unmodified	_FIGSVSKEAP_					0	0	0			REV__ENST00000497479.1_1_18:74809335-74845477:-|nuORF	REV__ENST00000497479.1_1_18:74809335-74845477:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.296630859375	2	517.779482	1033.54441	0.3659	0.00018946	-0.74892	-0.00038778	-0.38302	-0.00019832	517.7790649342282	78.895	0.63367	78.664	78.389	79.023	-0.23141					18	14	2	0	0	0	0.03519	1	9390	9390		65.465	9.0316	1	130550	+		15863	33622	11267	11287	17167	17167					0.028980367233771176
FIHHTSKDSYD	11	Unmodified	_FIHHTSKDSYD_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2742614746094	3	450.542203	1348.60478	-0.17758	-8.0009E-05	0.6929	0.00031218	0.51531	0.00023217	450.8777442663516	92.285	0.19839	92.163	92.102	92.301	-0.12242					6	4	2	0	0	0	0.024801	1	11355	11355		17.833	9.7988	1	41394			15864	7570	11268	11288	17168	17168					-0.05557897684184354
FIHNSELL	8	Unmodified	_FIHNSELL_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.76141357421875	2	486.761092	971.507631	-0.016372	-7.9692E-06	-0.084023	-4.0899E-05	-0.10039	-4.8868E-05	486.7609344260219	63.652	1.2852	63.4	62.809	64.094	-0.25141					56	34	2	0	0	0	0.33369	1	7425	7425		106.42	17.772	1	2469100			15865	2334	11269	11289	17169	17169					0.020737848974931694
FIHNSELL	8	Unmodified	_FIHNSELL_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.761092	971.507631	0.08137	3.9608E-05	-0.20929	-0.00010187	-0.12792	-6.2266E-05	486.7609000014543	63.403	1.2077	63.403	62.854	64.062	0	-0.03147	0.00034169	NaN	106.42	55	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2413800			15866	2334	11269	11289							0.020737848974931694
FIHNSELL	8	Unmodified	_FIHNSELL_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.761092	971.507631	0.95935	0.00046697	-1.087	-0.00052912	-0.12768	-6.2149E-05	486.7604462321702	63.399	1.2017	63.453	62.888	64.09	0.054104	0.018383	-0.00051281	NaN	106.42	55	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2630800			15867	2334	11269	11289							0.020737848974931694
FIHNSELL	8	Unmodified	_FIHNSELL_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.761092	971.507631	-0.18091	-8.8058E-05	-0.76726	-0.00037347	-0.94817	-0.00046153	486.7608739621044	63.645	1.3294	63.417	62.933	64.263	-0.22773	-0.017812	-0.00020151	NaN	106.42	78	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1971300			15868	2334	11269	11289							0.020737848974931694
FIHNSELL	8	Unmodified	_FIHNSELL_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.761092	971.507631	-0.056815	-2.7656E-05	-1.2089	-0.00058842	-1.2657	-0.00061608	486.76079134204736	63.611	1.4437	63.419	62.947	64.391	-0.19243	-0.016128	-0.00063141	NaN	106.42	87	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1652400			15869	2334	11269	11289							0.020737848974931694
FIHNSELL	8	Unmodified	_FIHNSELL_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.761092	971.507631	0.55	0.00026772	-0.77598	-0.00037772	-0.22598	-0.00011	486.76055315755366	63.775	0.91508	63.516	62.96	63.875	-0.25824	0.08156	-0.00021	NaN	106.42	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1735200			15870	2334	11269	11289							0.020737848974931694
FIHTLEAQS	9	Unmodified	_FIHTLEAQS_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.800048828125	2	523.269281	1044.52401	-0.51	-0.00026687	1.6431	0.00085981	1.1332	0.00059294	523.2692692741708	48.054	0.51407	48.12	47.903	48.417	0.066795					18	13	2	0	0	0	0.024495	1	4859	4859		19.997	0	1	413650			15871	4467	11270	11290	17170	17170					0.0035286606357658457
FIHTLSPGSV	10	Unmodified	_FIHTLSPGSV_					0	0	0		IL16|p.V384I|1|0.22|ENSG00000172349|chr15:81282707-81282707|G/A|missense_variant	IL16|p.V384I|1|0.22|ENSG00000172349|chr15:81282707-81282707|G/A|missense_variant	IL16|p.V384I|1|0.22|ENSG00000172349|chr15:81282707-81282707|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2879638671875	2	529.287474	1056.5604	0.38914	0.00020597	-0.91607	-0.00048487	-0.52693	-0.0002789	529.286894664619	85.499	1.0534	85.35	84.867	85.92	-0.14967					56	24	4	0	0	0	0.60198	1	10390	10390		76.774	27.238	1	2491000			15872	17761	11271	11291	17171	17171					0.03437742960295509
FIHTLSPGSV	10	Unmodified	_FIHTLSPGSV_					0	0	0		IL16|p.V384I|1|0.22|ENSG00000172349|chr15:81282707-81282707|G/A|missense_variant	IL16|p.V384I|1|0.22|ENSG00000172349|chr15:81282707-81282707|G/A|missense_variant	IL16|p.V384I|1|0.22|ENSG00000172349|chr15:81282707-81282707|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.28759765625	2	529.287474	1056.5604	0.42473	0.0002248	-0.85236	-0.00045114	-0.42763	-0.00022634	529.286946788846	85.53	1.0172	85.392	84.988	86.006	-0.13753					57	23	4	0	0	0	0.65054	1	10377	10377		71.296	7.7619	1	2225600			15873	17761	11271	11291	17172	17172					0.03437742960295509
FIIANIPLP	9	Unmodified	_FIIANIPLP_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	ENSG00000018625|ENST00000361216|ATP1A2;nc|ENSG00000163399|P05023-3|ATP1A1	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3197937011719	2	499.307678	996.600803	1.0792	0.00053885	-1.1396	-0.000569	-0.060383	-3.015E-05	499.30697107001777	96.889	1.1537	96.889	96.528	97.682	-3.8147E-05					46	25	2	0	0	0	0.024262	1	12271	12271		57.811	17.033	1	220700			15874	943;7073	11272	11292	17173	17173					0.10236709350692763
FIICWFPY	8	Unmodified	_FIICWFPY_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.796875	2	544.767332	1087.52011	-0.6761	-0.00036832	-2.3482	-0.0012792	-3.0243	-0.0016476	545.2660417793377	72.077	0.32685	71.87	71.699	72.026	-0.20613					10	7	2	0	0	0	0.027866	1	8423	8423		54.895	17.735	1	58170			15875	3325	11273	11293	17174	17174					-0.02014894963849656
FIIHILLW	8	Unmodified	_FIIHILLW_					0	0	0			REV__ENST00000357103.4_1_12:1895519-1895615:+|nuORF	REV__ENST00000357103.4_1_12:1895519-1895615:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2804565429688	2	527.826038	1053.63752	-1.0069	-0.00053145	-2.8518	-0.0015053	-3.8587	-0.0020367	527.8242892624235	68.729	0.7725	68.468	68.103	68.875	-0.26166					38	18	3	0	0	0	0.027866	1	8002	8002		16.705	0	1	741910	+		15876	30819	11274	11294	17175	17175					0.11285005967260986
FIIKADKQL	9	Unmodified	_FIIKADKQL_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7493896484375	2	538.329142	1074.64373	-0.94338	-0.00050785	-4.2234	-0.0022736	-5.1668	-0.0027814	538.3263173003947	76.09	0.22935	76.09	75.881	76.11	0					7	5	2	0	0	0	0.024261	1	9367	9367		64.207	0	1	134010	+		15877	37546	11275	11295	17176	17176					0.10939479408125408
FIILEVDCGD	10	Unmodified	_FIILEVDCGD_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2792358398438	2	562.270632	1122.52671	0.32387	0.0001821	-1.3565	-0.0007627	-1.0326	-0.0005806	562.2702020678505	84.62	0.77518	84.482	83.801	84.576	-0.13789					44	17	4	0	0	0	0.03519	1	10237	10237		29.15	6.1128	1	282910	+		15878	21909	11276	11296	17177	17177					-0.029650465937720583
FIILGLGLTV	10	Unmodified	_FIILGLGLTV_					0	0	0			REV__ENST00000477537.1_1_6:32903307-32903421:-|nuORF	REV__ENST00000477537.1_1_6:32903307-32903421:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3069458007812	2	523.336436	1044.65832	0.63801	0.0003339	-0.93619	-0.00048994	-0.29817	-0.00015605	523.3357779408824	71.289	0.54918	71	70.802	71.351	-0.28858					20	13	2	0	0	0	0.03519	1	8649	8649		24.203	0	1	338330	+		15879	28979	11277	11297	17178	17178					0.1377755155624527
FIIQGLRSV	9	Unmodified	_FIIQGLRSV_					0	0	0		ENST00000460633.1_1_6:32610352-32610538:+|nuORF;ENST00000482745.5_1_6:32607639-32610538:+|nuORF;ENSG00000237541|ENST00000374940|HLA-DQA2;ENSG00000196735|ENST00000343139|HLA-DQA1	ENST00000460633.1_1_6:32610352-32610538:+|nuORF	ENST00000460633.1_1_6:32610352-32610538:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.8133544921875	2	516.813659	1031.61277	-1.1932	-0.00061665	0.49751	0.00025712	-0.69567	-0.00035953	516.8137936972872	65.037	1.0311	65.037	64.69	65.721	0					95	28	5	0	0	0	0.015752	3	7680	7668;7680;7692		158.07	64.068	1	15526000			15880	9917	11278	11298	17179;17180;17181	17180					0.09822326093922129
FIIQGLRSV	9	Unmodified	_FIIQGLRSV_					0	0	0		ENST00000460633.1_1_6:32610352-32610538:+|nuORF;ENST00000482745.5_1_6:32607639-32610538:+|nuORF;ENSG00000237541|ENST00000374940|HLA-DQA2;ENSG00000196735|ENST00000343139|HLA-DQA1	ENST00000460633.1_1_6:32610352-32610538:+|nuORF	ENST00000460633.1_1_6:32610352-32610538:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.8136596679688	2	516.813659	1031.61277	-0.98111	-0.00050705	0.20813	0.00010757	-0.77297	-0.00039948	516.813656094782	65.309	1.0466	65.036	64.712	65.758	-0.27282					95	28	4	0	0	0	0.03201	3	7685	7676;7685;7698		139.97	57.665	1	15881000			15881	9917	11278	11298	17182;17183;17184	17183					0.09822326093922129
FIIQGLRSV	9	Unmodified	_FIIQGLRSV_					0	0	0		ENST00000460633.1_1_6:32610352-32610538:+|nuORF;ENST00000482745.5_1_6:32607639-32610538:+|nuORF;ENSG00000237541|ENST00000374940|HLA-DQA2;ENSG00000196735|ENST00000343139|HLA-DQA1	ENST00000460633.1_1_6:32610352-32610538:+|nuORF	ENST00000460633.1_1_6:32610352-32610538:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.8143310546875	2	516.813659	1031.61277	-0.86004	-0.00044448	0.081281	4.2007E-05	-0.77876	-0.00040248	516.8136234832643	65.046	1.0766	65.084	64.743	65.82	0.037376					77	29	3	0	0	0	0.041068	2	7585	7585;7596		132.76	53.307	1	15613000			15882	9917	11278	11298	17185;17186	17185					0.09822326093922129
FIISRTQAL	9	Unmodified	_FIISRTQAL_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.81005859375	2	524.811116	1047.60768	-0.96395	-0.00050589	0.75351	0.00039545	-0.21044	-0.00011044	524.811394079425	55.944	0.9117	55.787	55.462	56.373	-0.15655					65	23	4	0	0	0	0.43628	1	6025	6025		63.534	8.7575	1	3323300			15883	18095	11279	11299	17187	17187					0.08578022231267823
FIISRTQAL	9	Unmodified	_FIISRTQAL_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.8097534179688	2	524.811116	1047.60768	0.02954	1.5503E-05	-0.18634	-9.7793E-05	-0.1568	-8.229E-05	524.8108891731038	56.002	1.1852	55.786	55.205	56.39	-0.21607					72	31	4	0	0	0	0.40693	1	6035	6035		65.465	13.166	1	3513200			15884	18095	11279	11299	17188	17188					0.08578022231267823
FIISRTQAL	9	Unmodified	_FIISRTQAL_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.810546875	2	524.811116	1047.60768	-1.0159	-0.00053316	0.71204	0.00037369	-0.30387	-0.00015947	524.8114038628538	56.051	1.1215	55.835	55.234	56.356	-0.21551					69	29	4	0	0	0	0.17845	2	6034	6024;6034		93.143	21.765	1	3567600			15885	18095	11279	11299	17189;17190	17190					0.08578022231267823
FIITDGDIK	9	Unmodified	_FIITDGDIK_					0	0	0			REV__nc|ENSG00000091129|Q92823-3|NRCAM	REV__nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2632141113281	2	511.281857	1020.54916	0.57818	0.00029561	-0.95117	-0.00048632	-0.37299	-0.0001907	511.2812487088744	83.931	0.7234	83.719	83.436	84.159	-0.21159					24	16	2	0	0	0	0.024506	1	10150	10150		38.806	14.302	1	220910	+		15886	20900	11280	11300	17191	17191					0.03970920866140659
FIIVLPRQL	9	Unmodified	_FIIVLPRQL_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.8548583984375	2	549.855327	1097.6961	-0.66835	-0.00036749	0.54642	0.00030045	-0.12193	-6.7043E-05	549.8554926606838	79.902	1.6023	79.902	79.616	81.218	0					94	38	3	0	0	0	0.22754	3	9921	9906;9909;9921		85.359	18.93	1	1386000	+		15887	26836	11281	11301	17192;17193;17194	17194					0.15116062541756037
FIIVLPRQL	9	Unmodified	_FIIVLPRQL_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.85595703125	2	549.855327	1097.6961	-1.5028	-0.00082634	1.264	0.00069503	-0.2388	-0.00013131	549.8558519377254	80.092	1.6483	79.941	79.588	81.237	-0.15169					105	39	4	0	0	0	0.40179	1	9893	9893		65.803	4.8312	1	1370200	+		15888	26836	11281	11301	17195	17195					0.15116062541756037
FIIWLIFL	8	Unmodified	_FIIWLIFL_					0	0	0			REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7567749023438	2	532.830789	1063.64703	-0.15316	-8.1607E-05	3.0126	0.0016052	2.8594	0.0015236	532.8322684553804	58.98	0.88769	58.799	58.347	59.235	-0.18134					44	21	3	0	0	0	0.027866	1	6523	6523		24.504	4.0222	1	1365000	+		15889	32158	11282	11302	17196	17196					0.11774774252785392
FIKDEQNKI	9	Unmodified	_FIKDEQNKI_					0	0	0		ENST00000491771.5_1_2:152135291-152146334:-|nuORF	ENST00000491771.5_1_2:152135291-152146334:-|nuORF	ENST00000491771.5_1_2:152135291-152146334:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.810546875	2	567.811313	1133.60807	-0.73961	-0.00041996	-0.32741	-0.00018591	-1.067	-0.00060587	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.33603	1	8308	8308		70.816	1.1886	1	14091000			15890	15469	11283	11303	17197	17197					0.04661397160452907
FIKECFGTLL	10	Carbamidomethyl (C)	_FIKEC(Carbamidomethyl (C))FGTLL_	FIKEC(1)FGTLL		FIKEC(58)FGTLL		0	1	0		ENST00000496738.5_1_1:156107588-156107735:+|nuORF	ENST00000496738.5_1_1:156107588-156107735:+|nuORF	ENST00000496738.5_1_1:156107588-156107735:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.8862609863281	3	409.886253	1226.63693	0.11489	4.709E-05	-0.28849	-0.00011825	-0.17361	-7.1159E-05	409.8861759658138	34.5	1.4092	34.55	34.213	35.623	0.050255					110	36	5	0	0	0	0.83673	1	2512	2512		58.23	12.322	1	10789000			15891	15574	11284	11304	17198	17198	203				0.03267798465253691
FIKERLKL	8	Unmodified	_FIKERLKL_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2992553710938	2	523.839677	1045.6648	-0.82434	-0.00043182	0.61042	0.00031976	-0.21392	-0.00011206	523.8399994574007	51.917	0.44012	52.009	51.72	52.16	0.091942					14	11	2	0	0	0	0.027866	1	5470	5470		90.777	0	1	95480			15892	9435	11285	11305	17199	17199					0.14379489507655308
FIKGGAGGEP	10	Unmodified	_FIKGGAGGEP_					0	0	0		ENST00000301453.7_1_11:63765124-63765358:+|nuORF	ENST00000301453.7_1_11:63765124-63765358:+|nuORF	ENST00000301453.7_1_11:63765124-63765358:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.893310546875	2	466.745442	931.476331	-0.30733	-0.00014344	1.2837	0.00059917	0.97638	0.00045572	466.7457700247842	29.81	0.84467	29.66	29.254	30.099	-0.14952					26	19	2	0	0	0	0.03519	1	1865	1865		27.882	0	1	113580			15893	11928	11286	11306	17200	17200					0.007852118633763894
FIKGYPITL	9	Unmodified	_FIKGYPITL_					0	0	0		ENST00000370331.5_1_1:93169133-93170263:-|nuORF	ENST00000370331.5_1_1:93169133-93170263:-|nuORF	ENST00000370331.5_1_1:93169133-93170263:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.3143310546875	2	526.312961	1050.61137	0.52039	0.00027389	2.794	0.0014705	3.3144	0.0017444	526.3142599494698	77.669	2.9652	77.427	77.009	79.974	-0.24232					170	70	3	0	0	0	0.23085	1	9306	9306		84.916	2.675	1	1754800			15894	12955	11287	11307	17201	17201					0.08808692005140983
FIKKALDVT	9	Unmodified	_FIKKALDVT_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2691040039062	2	517.815867	1033.61718	-0.72948	-0.00037774	0.3012	0.00015597	-0.42828	-0.00022177	517.8158485255772	28.055	0.72877	27.81	27.593	28.322	-0.24524					39	17	3	0	0	0	0.023837	1	1609	1609		54.776	0	1	890530	+		15895	21761	11288	11308	17202	17202					0.10171790516801593
FIKKALDVT	9	Unmodified	_FIKKALDVT_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2677001953125	2	517.815867	1033.61718	-0.27364	-0.00014169	-0.32476	-0.00016816	-0.59839	-0.00030986	517.8155079285323	28.035	0.63355	27.883	27.649	28.283	-0.15195					41	15	4	0	0	0	0.023239	1	1577	1577		64.207	0	1	975200	+		15896	21761	11288	11308	17203	17203					0.10171790516801593
FIKKGKDPL	9	Unmodified	_FIKKGKDPL_					0	0	0			REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF	REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3233032226562	2	523.32386	1044.63317	-0.016974	-8.8831E-06	-0.79411	-0.00041558	-0.81108	-0.00042446	523.3233662662817	67.266	1.3389	67.29	66.942	68.281	0.023911					93	33	5	0	0	0	0.39228	1	7962	7962		66.429	2.222	1	12746000	+		15897	29068	11289	11309	17204	17204					0.1126349675369056
FIKKLGSVSQ	10	Unmodified	_FIKKLGSVSQ_					0	0	0			REV__nc|ENSG00000164823|Q9Y236|OSGIN2	REV__nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.8152465820312	2	553.832049	1105.64954	-0.38403	-0.00021269	-4.0583	-0.0022476	-4.4423	-0.0024603	553.829606582594	100.2	0.21086	100.21	100.13	100.34	0.010117					8	4	2	0	0	0	0.03519	1	12781	12781		31.53	0	1	41465	+		15898	25808	11290	11310	17205	17205					0.10094577919812764
FIKLCSKIQ	9	Unmodified	_FIKLCSKIQ_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-5|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.33447265625	2	540.31772	1078.62089	-0.29836	-0.00016121	-4.1042	-0.0022176	-4.4026	-0.0023788	540.3152714743502	78.74	0.94524	78.486	77.869	78.814	-0.25471					39	20	3	0	0	0	0.024288	1	9435	9435		71.877	22.436	1	219700			15899	9598	11291	11311	17206	17206					0.0847213701902092
FIKSFTPYI	9	Unmodified	_FIKSFTPYI_					0	0	0			REV__ENST00000491323.5_1_3:62306146-62307782:+|nuORF	REV__ENST00000491323.5_1_3:62306146-62307782:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.265869140625	2	558.310418	1114.60628	-1.078	-0.00060187	0.27695	0.00015462	-0.80107	-0.00044725	558.3104581110903	83.929	0.819	83.84	83.429	84.248	-0.088791					30	18	2	0	0	0	0.023655	1	10459	10459		79.713	46.9	1	42782	+		15900	33723	11292	11312	17207	17207					0.05356388142513424
FIKVMFIEV	9	Unmodified	_FIKVMFIEV_					0	0	0			REV__ENSG00000111432|ENST00000229030|FZD10	REV__ENSG00000111432|ENST00000229030|FZD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.2767944335938	2	563.322471	1124.63039	-0.92827	-0.00052292	-2.0024	-0.001128	-2.9307	-0.0016509	563.320750859413	81.693	0.32275	81.719	81.536	81.859	0.025711					9	7	2	0	0	0	0.024021	1	10085	10085		68.787	2.3575	1	51471	+		15901	21919	11293	11313	17208	17208					0.07305905304542648
FILEKIQGK	9	Unmodified	_FILEKIQGK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7494506835938	2	538.329142	1074.64373	-0.42057	-0.00022641	-1.8859	-0.0010152	-2.3064	-0.0012416	538.3282270461636	76.134	0.62985	75.875	75.634	76.264	-0.25866					22	12	3	0	0	0	0.024477	1	9054	9054		35.618	0	1	144300			15902	1599	11294	11314	17209	17209					0.10939479408125408
FILELLRKEEY	11	Unmodified	_FILELLRKEEY_					0	0	0		ENST00000596818.1_1_19:42754481-42759151:-|nuORF;ENSG00000105722|ENST00000222329|ERF	ENST00000596818.1_1_19:42754481-42759151:-|nuORF	ENST00000596818.1_1_19:42754481-42759151:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7984619140625	3	484.941415	1451.80242	1.3991	0.00067849	3.5454	0.0017193	4.9445	0.0023978	485.27725386013105	59.024	0.61124	58.837	58.538	59.149	-0.18705					22	16	2	0	0	0	0.024809	1	6682	6682		28.577	11.41	1	627060			15903	2716	11295	11315	17210	17210					0.09458728525783044
FILESNYTK	9	Unmodified	_FILESNYTK_					0	0	0		ENST00000301096.7_1_19:53115701-53115779:-|nuORF	ENST00000301096.7_1_19:53115701-53115779:-|nuORF	ENST00000301096.7_1_19:53115701-53115779:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	557.7940063476562	2	557.792589	1113.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.357	1	18.42	17.92	18.92	0.063307								0	0	0	0.68716	1	242	242		23.042	3.0457	1				15904	11922	11296	11316	17211	17211					0.018383058948302278
FILFFIKA	8	Unmodified	_FILFFIKA_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.8091125488281	2	499.807314	997.600075	-0.86348	-0.00043157	3.5948	0.0017967	2.7314	0.0013651	499.809071667659	38.135	1.0039	37.914	37.649	38.653	-0.22149					85	27	4	0	0	0	0.94001	1	3138	3138		46.766	2.2354	1	12379000			15905	5120	11297	11317	17212	17212					0.10117914701652353
FILFQYLF	8	Unmodified	_FILFQYLF_					0	0	0			REV__ENST00000353275.9_2_4:1981367-1981547:+|nuORF	REV__ENST00000353275.9_2_4:1981367-1981547:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2860717773438	2	545.802229	1089.5899	-1.4797	-0.00080761	-2.1716	-0.0011853	-3.6512	-0.0019929	545.8008402751732	83.866	1.146	83.776	83.553	84.699	-0.090454					40	26	3	0	0	0	0.027866	1	10543	10543		74.517	0	1	128360	+		15906	30742	11298	11318	17213	17213					0.048693069764112806
FILFSLNFP	9	Unmodified	_FILFSLNFP_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|349|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|202|1|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|353|3|anti-sense;chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|77;chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|88;chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|82;chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|87;chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|56;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|97	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|349|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|349|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.3031005859375	2	549.305136	1096.59572	0.04961	2.7251E-05	-3.8456	-0.0021124	-3.796	-0.0020852	549.3029806825865	78.876	1.0966	78.621	78.384	79.48	-0.25471					50	25	4	0	0	0	0.4752	1	9417	9417		60.972	2.19	1	1691300			15907	287	11299	11319	17214	17214					0.051284054880852636
FILHQRTHT	9	Unmodified	_FILHQRTHT_					0	0	0		nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.2949829101562	2	576.817264	1151.61998	-0.19579	-0.00011293	-3.7521	-0.0021643	-3.9479	-0.0022772	576.8146382796234	82.62	0.5218	82.44	82.157	82.679	-0.18079					15	11	2	0	0	0	0.024412	1	9990	9990		50.025	0	1	88833			15908	18586	11300	11320	17215	17215					0.05023058694314386
FILIAFFLL	9	Unmodified	_FILIAFFLL_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.2913208007812	2	548.843897	1095.67324	0.063117	3.4641E-05	2.6815	0.0014717	2.7447	0.0015064	549.3459357440378	72.187	0.38353	72.197	71.988	72.371	0.0097656					14	9	2	0	0	0	0.024289	1	8727	8727		60.404	11.193	1	343990	+		15909	24120	11301	11321	17216	17216					0.12923043424279967
FILIIILQN	9	Unmodified	_FILIIILQN_					0	0	0			REV__ENSG00000178358|ENST00000317834|OR2D3	REV__ENSG00000178358|ENST00000317834|OR2D3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8500366210938	2	543.84971	1085.68487	-0.80649	-0.00043861	0.61679	0.00033544	-0.1897	-0.00010317	543.850093839186	77.186	1.037	76.975	76.708	77.745	-0.21087					44	24	2	0	0	0	0.52323	1	9498	9498		57.811	1.0902	1	1257600	+		15910	27182	11302	11322	17217	17217					0.14545240447637298
FILKFLILVK	10	Unmodified	_FILKFLILVK_					0	0	0			REV__AVL9|p.L199F|1|0.36|ENSG00000105778|chr7:32554582-32554582|C/T|missense_variant	REV__AVL9|p.L199F|1|0.36|ENSG00000105778|chr7:32554582-32554582|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.5631103515625	3	411.949294	1232.82605	0.4437	0.00018278	-1.6486	-0.00067916	-1.2049	-0.00049638	411.94836221251586	32.671	0.2397	32.478	32.417	32.657	-0.19261					7	5	2	0	0	0	0.03519	1	2289	2289		7.3997	0	1	41087	+		15911	19192	11303	11323	17218	17218					0.21895238820866325
FILKQEYYL	9	Unmodified	_FILKQEYYL_					0	0	0		nc|ENSG00000164220|O00254-2|F2RL2;ENSG00000164220|ENST00000296641|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.8359985351562	2	608.834257	1215.65396	0.31552	0.0001921	3.9588	0.0024102	4.2743	0.0026023	608.8365388372442	109.86	0.70741	109.71	109.47	110.18	-0.14888					85	33	5	0	0	0	0.98128	1	13475	13475		24.203	2.517	1	6043200			15912	7241	11304	11324	17219	17219					0.0547604234272967
FILKSGLKSN	10	Unmodified	_FILKSGLKSN_					0	0	0			REV__ENSG00000214029|ENST00000537226|ZNF891	REV__ENSG00000214029|ENST00000537226|ZNF891	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8301391601562	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.0719	1	10854	10854		36.447	7.2767	1	5986700	+		15913	28766	11305	11325	17220	17220					0.10094577919812764
FILLDSLPLD	10	Unmodified	_FILLDSLPLD_					0	0	0		ENST00000402743.2_1_1:44587827-44588175:-|nuORF	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	ENST00000402743.2_1_1:44587827-44588175:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.3247680664062	2	573.326265	1144.63798	0.26523	0.00015206	-4.003	-0.002295	-3.7378	-0.002143	573.3237901696456	108.39	0.55177	108.39	107.99	108.54	0					60	27	4	0	0	0	1.1166	1	13876	13876		30.504	0.18592	1	9295500			15914	13689	11306	11326	17221	17221					0.0714433610580727
FILLKWKS	8	Unmodified	_FILLKWKS_					0	0	0			REV__ENST00000538854.1_1_12:1726125-1726263:+|nuORF	REV__ENST00000538854.1_1_12:1726125-1726263:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.8153686523438	2	517.823495	1033.63244	-0.70308	-0.00036407	3.4664	0.001795	2.7633	0.0014309	517.8253217110243	64.577	0.52762	64.622	64.335	64.862	0.045502					21	13	2	0	0	0	0.027866	1	7485	7485		23.042	0	1	495510	+		15915	34722	11307	11327	17222	17222					0.11696702104654833
FILLSVLKI	9	Unmodified	_FILLSVLKI_					0	0	0		ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	523.354628	1044.6947	0.67765	0.00035465	-1.7669	-0.00092474	-1.0893	-0.00057008	523.3536324470593	86.909	0.42085	86.767	86.582	87.003	-0.14217					11	9	2	0	0	0	0.02435	1	10575	10575		51.335	14.176	1	20228			15916	7741	11308	11328	17223	17223					0.17414428452980246
FILLSWLPT	9	Unmodified	_FILLSWLPT_					0	0	0		ENST00000488738.5_1_20:61594563-61595083:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	ENST00000488738.5_1_20:61594563-61595083:+|nuORF	ENST00000488738.5_1_20:61594563-61595083:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3209228515625	2	545.320786	1088.62702	-1.0772	-0.00058743	-3.2622	-0.0017789	-4.3394	-0.0023664	545.3187425396283	66.64	0.45721	66.67	66.491	66.948	0.030106					16	10	2	0	0	0	0.22754	1	7855	7855		85.359	25.241	1	1325800			15917	2292	11309	11329	17224	17224					0.08624978522175297
FILLSWLPT	9	Unmodified	_FILLSWLPT_					0	0	0		ENST00000488738.5_1_20:61594563-61595083:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	ENST00000488738.5_1_20:61594563-61595083:+|nuORF	ENST00000488738.5_1_20:61594563-61595083:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	545.320786	1088.62702	-0.64298	-0.00035063	-3.3835	-0.0018451	-4.0264	-0.0021957	545.3187944166144	66.542	0.47304	66.542	66.368	66.841	0	-0.077737	-0.00019909	NaN	85.359	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	996950			15918	2292	11309	11329							0.08624978522175297
FILLSWLPT	9	Unmodified	_FILLSWLPT_					0	0	0		ENST00000488738.5_1_20:61594563-61595083:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	ENST00000488738.5_1_20:61594563-61595083:+|nuORF	ENST00000488738.5_1_20:61594563-61595083:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.320786	1088.62702	-1.0705	-0.00058374	-2.7963	-0.0015249	-3.8668	-0.0021086	545.3188866197755	66.928	0.5267	66.647	66.432	66.958	-0.28149	0.027335	0.00044125	NaN	85.359	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1242800			15919	2292	11309	11329							0.08624978522175297
FILLVHVSAT	10	Unmodified	_FILLVHVSAT_					0	0	0		ENST00000233336.6_1_2:113288741-113288918:+|nuORF	ENST00000233336.6_1_2:113288741-113288918:+|nuORF	ENST00000233336.6_1_2:113288741-113288918:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3260498046875	2	550.329142	1098.64373	-0.26348	-0.000145	-4.1347	-0.0022755	-4.3982	-0.0024205	550.3279305908578	98.909	1.0484	98.919	98.397	99.446	0.010231					50	23	3	0	0	0	1.0004	1	12618	12618		45.952	15.448	1	216050			15920	11241	11310	11330	17225	17225					0.09835479408138781
FILMSICLNV	10	Unmodified	_FILMSICLNV_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.7830200195312	2	576.811413	1151.60827	-0.7246	-0.00041796	0.5712	0.00032947	-0.1534	-8.8486E-05	576.8115833407746	65.862	0.69526	65.611	65.229	65.925	-0.25112					23	16	2	0	0	0	0.03519	1	7535	7535		56.721	0	1	171870	+		15921	24364	11311	11331	17226	17226					0.03853357564457838
FILRRKSHY	9	Unmodified	_FILRRKSHY_					0	0	0			REV__ENSG00000124762|ENST00000244741|CDKN1A	REV__ENSG00000124762|ENST00000244741|CDKN1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.231689453125	3	407.24013	1218.69856	0.40189	0.00016367	2.5259	0.0010286	2.9277	0.0011923	407.24134148105327	43.279	0.14341	43.279	43.224	43.367	0					5	3	2	0	0	0	0.024541	1	4047	4047		26.693	13.185	1	101550	+		15922	22784	11312	11332	17227	17227					0.0979591099942354
FILSLKTELN	10	Unmodified	_FILSLKTELN_					0	0	0			REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3413696289062	2	589.344989	1176.67542	0.82714	0.00048747	-4.0269	-0.0023732	-3.1997	-0.0018857	589.3423171920064	103.68	0.66261	103.68	103.44	104.11	-0.0032196					38	15	3	0	0	0	0.96822	1	13213	13213		49.536	5.4192	1	579690	+		15923	31396	11313	11333	17228	17228					0.09415427371436635
FILTANHPDA	10	Unmodified	_FILTANHPDA_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.7587280273438	2	549.782556	1097.55056	0.27479	0.00015107	1.1178	0.00061457	1.3926	0.00076564	549.7819178344998	68.7	0.725	68.457	68.149	68.874	-0.24277					39	17	3	0	0	0	0.03519	1	7938	7938		62.107	9.8082	1	366790	+		15924	24273	11314	11334	17229	17229					0.005685549549070856
FILTTRSFL	9	Unmodified	_FILTTRSFL_					0	0	0		ENST00000494484.1_1_7:44841004-44841067:+|nuORF	ENST00000494484.1_1_7:44841004-44841067:+|nuORF	ENST00000494484.1_1_7:44841004-44841067:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3031005859375	2	549.321317	1096.62808	-0.5751	-0.00031592	-2.2143	-0.0012164	-2.7894	-0.0015323	549.3200908374048	78.897	0.33405	78.705	78.548	78.883	-0.19211					12	7	3	0	0	0	0.024477	1	9720	9720		44.117	9.9443	1	118390			15925	15529	11315	11335	17230	17230					0.0836319289110179
FILWALIL	8	Unmodified	_FILWALIL_					0	0	0		ENST00000532865.5_2_6:26365529-26368244:+|nuORF;ENST00000527422.5_1_6:26365529-26368244:+|nuORF	ENST00000532865.5_2_6:26365529-26368244:+|nuORF	ENST00000532865.5_2_6:26365529-26368244:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7344665527344	2	494.815139	987.615725	0.15658	7.7479E-05	-4.2992	-0.0021273	-4.1426	-0.0020498	494.8127414088007	67.818	0.57259	67.584	67.387	67.96	-0.23376					23	13	2	0	0	0	0.027866	1	7836	7836		43.626	0	1	285170			15926	16153	11316	11336	17231	17231					0.12142201218705395
FIMESFHGE	9	Unmodified	_FIMESFHGE_					0	0	0			REV__ENSG00000251247|ENST00000420450|ZNF345	REV__ENSG00000251247|ENST00000420450|ZNF345	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2919311523438	2	548.742042	1095.46953	-0.41115	-0.00022562	3.4402	0.0018878	3.0291	0.0016622	548.743783638936	72.69	0.70111	72.69	72.333	73.034	0					31	16	3	0	0	0	0.023596	1	8810	8810		73.975	18.471	1	501780	+		15927	29031	11317	11337	17232	17232					-0.07438469079488641
FIMKNGSMSI	10	Unmodified	_FIMKNGSMSI_					0	0	0		ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	ENST00000444990.5_1_2:243030866-243058384:+|nuORF	ENST00000444990.5_1_2:243030866-243058384:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.77099609375	2	564.28302	1126.55149	0.4892	0.00027604	2.4838	0.0014015	2.9729	0.0016776	564.2842139483499	87.523	0.54584	87.387	87.136	87.682	-0.13614					25	12	3	0	0	0	0.03519	1	10638	10638		56.721	14.325	1	267150			15928	14430	11318	11338	17233	17233					-0.0067268999205225555
FIMLLDCLL	9	Unmodified	_FIMLLDCLL_					0	0	0			REV__ENSG00000118007|ENST00000383202|STAG1;REV__NCK1-STAG1|1|fusion	REV__NCK1-STAG1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.7640991210938	2	540.795232	1079.57591	-0.42806	-0.00023149	3.6348	0.0019657	3.2068	0.0017342	540.7976680986573	77.421	0.91833	77.21	76.912	77.83	-0.21087					80	21	5	0	0	0	0.024325	1	9499	9499		40.573	0	1	1568400	+		15929	22382;37265	11319	11339	17234	17234					0.039305701614694044
FIMLYPVASV	10	Unmodified	_FIMLYPVASV_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7378540039062	2	570.312103	1138.60965	0.1926	0.00010984	1.415	0.00080698	1.6076	0.00091682	570.3133803016005	57.644	0.41798	57.454	57.332	57.75	-0.19018					17	10	2	0	0	0	0.03519	1	6324	6324		23.042	7.4007	1	163950			15930	4722	11320	11340	17235	17235					0.04589314924851351
FIMSNSGDY	9	Unmodified	_FIMSNSGDY_					0	0	0		nc|ENSG00000149499|Q32P44-2|EML3;ENST00000460939.5_1_11:62370516-62371529:-|nuORF;ENSG00000149499|ENST00000394773|EML3	nc|ENSG00000149499|Q32P44-2|EML3	nc|ENSG00000149499|Q32P44-2|EML3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3236083984375	2	517.2184	1032.42225	1.3345	0.00069024	-2.3455	-0.0012131	-1.0109	-0.00052288	517.2170964912175	63.859	0.21783	63.859	63.736	63.954	0					9	5	2	0	0	0	0.024263	1	7475	7475		51.335	17.842	1	61581			15931	18376	11321	11341	17236	17236					-0.09266748350478338
FINEETRAL	9	Unmodified	_FINEETRAL_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3101806640625	2	546.787838	1091.56112	-0.21686	-0.00011858	-0.1065	-5.8231E-05	-0.32336	-0.00017681	546.7865469118253	63.708	0.29729	63.516	63.38	63.677	-0.19243					9	7	2	0	0	0	0.024354	1	7199	7199		30.504	0	1	91203	+		15932	22918	11322	11342	17237	17237					0.019005376093446102
FINKKVTV	8	Unmodified	_FINKKVTV_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.79730224609375	2	474.797478	947.580402	0.05748	2.7291E-05	-0.055979	-2.6579E-05	0.0015006	7.125E-07	474.7972659599164	33.165	0.77005	32.934	32.627	33.397	-0.23107					40	18	3	0	0	0	0.42912	1	2336	2336		93.195	7.836	1	977520			15933	4386	11323	11343	17238	17238					0.10451538690904272
FINKKVTV	8	Unmodified	_FINKKVTV_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	474.797478	947.580402	-0.047586	-2.2594E-05	-0.0094463	-4.4851E-06	-0.057032	-2.7079E-05	474.7973253762599	33.161	0.71439	32.961	32.69	33.404	-0.20019	0.0042657	-0.00025681	NaN	93.195	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1018700			15934	4386	11323	11343							0.10451538690904272
FINKKVTV	8	Unmodified	_FINKKVTV_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	474.797478	947.580402	-0.74226	-0.00035242	0.72272	0.00034315	-0.019538	-9.2765E-06	474.7976466059303	33.14	0.72242	32.975	32.679	33.401	-0.16565	0.018178	0.00043846	NaN	93.195	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900740			15935	4386	11323	11343							0.10451538690904272
FINKSVLLF	9	Unmodified	_FINKSVLLF_					0	0	0			REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|53	REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|53	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.826171875	2	540.826235	1079.63792	-0.59281	-0.00032061	0.93637	0.00050642	0.34356	0.00018581	540.8261442175414	91.166	0.96547	91.027	90.784	91.75	-0.13942					68	22	4	0	0	0	0.20304	1	11155	11155		88.643	6.3378	1	880310	+		15936	19327	11324	11344	17239	17239					0.10128380896458111
FINLSNVLL	9	Unmodified	_FINLSNVLL_					0	0	0		ENSG00000163075|ENST00000413369|CFAP221;nc|ENSG00000163075|Q4G0U5-3|CFAP221;ENST00000413057.6_1_2:120317267-120388537:+|nuORF;nc|ENSG00000163075|Q4G0U5-4|CFAP221	ENSG00000163075|ENST00000413369|CFAP221	ENSG00000163075|ENST00000413369|CFAP221	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7993774414062	2	516.808042	1031.60153	0.00091182	4.7123E-07	2.0727	0.0010712	2.0736	0.0010716	516.8090210582499	105.06	0.14637	105.06	104.97	105.12	0					7	5	2	0	0	0	0.024436	1	13482	13482		38.806	13.356	1	73393			15937	7032	11325	11345	17240	17240					0.08699503999764602
FINLWVLL	8	Unmodified	_FINLWVLL_					0	0	0			REV__ENST00000426261.6_1_17:21476578-21476752:-|nuORF	REV__ENST00000426261.6_1_17:21476578-21476752:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7872619628906	2	509.310221	1016.60589	-0.67738	-0.000345	-2.4153	-0.0012301	-3.0927	-0.0015751	509.81041066375235	60.426	0.32683	60.426	60.219	60.546	0					13	8	2	0	0	0	0.027866	1	6926	6926		37.028	10.232	1	100600	+		15938	32270	11326	11346	17241	17241					0.09825013213321654
FINTQSIVQLV	11	Unmodified	_FINTQSIVQLV_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	631.3616943359375	2	631.36117	1260.70779	0.065171	4.1146E-05	0.96906	0.00061182	1.0342	0.00065297	631.3615108519828	66.562	0.83701	66.562	66.368	67.205	0					44	22	3	0	0	0	0.79085	1	7926	7926		58.246	12.294	1	1435000			15939	1585	11327	11347	17242	17242					0.08786214774409018
FINTQSIVQLV	11	Unmodified	_FINTQSIVQLV_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	631.3619384765625	2	631.36117	1260.70779	-0.54025	-0.00034109	1.3098	0.00082694	0.76953	0.00048585	631.3617539583471	66.652	0.81265	66.682	66.463	67.276	0.030106					48	19	3	0	0	0	0.87596	1	7854	7854		53.089	8.7118	1	1422600			15940	1585	11327	11347	17243	17243					0.08786214774409018
FINWLVIGV	9	Unmodified	_FINWLVIGV_					0	0	0			REV__nc|ENSG00000156709|O95831-5|AIFM1	REV__nc|ENSG00000156709|O95831-5|AIFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8115844726562	2	530.813128	1059.6117	0.19069	0.00010122	-4.1554	-0.0022058	-3.9647	-0.0021045	530.8111153104244	68.638	1.1778	68.408	67.917	69.095	-0.23048					73	28	4	0	0	0	0.24299	1	7934	7934		83.287	12.471	1	2277800	+		15941	25089	11328	11348	17244	17244					0.0842811172499296
FIPDTLFI	8	Unmodified	_FIPDTLFI_					0	0	0			REV__ENSG00000161048|ENST00000465647|NAPEPLD	REV__ENSG00000161048|ENST00000465647|NAPEPLD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.2703857421875	2	483.270761	964.52697	-0.88347	-0.00042695	-3.1117	-0.0015038	-3.9952	-0.0019308	483.26932738337007	83.044	1.6305	83.071	82.745	84.375	0.02655					103	37	5	0	0	0	0.58212	3	10272	10272;10276;10337		77.944	8.8509	1	12746000	+		15942	25373	11329	11349	17245;17246;17247	17245					0.04328741188373897
FIPIIYILV	9	Unmodified	_FIPIIYILV_					0	0	0		CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7761840820312	2	545.849179	1089.6838	-0.64612	-0.00035268	-3.2225	-0.001759	-3.8686	-0.0021117	545.8472772725678	52.224	0.51934	52.076	51.846	52.366	-0.14735					28	13	3	0	0	0	0.024389	1	5606	5606		39.021	0	1	626960			15943	217	11330	11350	17248	17248					0.14255026078672017
FIPMRTIYVE	10	Unmodified	_FIPMRTIYVE_					0	0	0			REV__ENST00000610036.1_1_2:105953225-105953450:-|nuORF	REV__ENST00000610036.1_1_2:105953225-105953450:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.25830078125	3	423.56177	1267.66348	1.4103	0.00059734	-0.56241	-0.00023822	0.84786	0.00035912	423.56156529534127	17.487	2.1789	17.333	17.159	19.338	-0.15403					69	43	4	0	0	0	0.03519	1	420	420		20.837	8.4043	1	1152400	+		15944	35992	11331	11351	17249	17249					0.04035487356577505
FIPPLAPLPT	10	Unmodified	_FIPPLAPLPT_					0	0	0		ENST00000467160.1_1_19:19758004-19758388:-|nuORF	ENST00000467160.1_1_19:19758004-19758388:-|nuORF	ENST00000467160.1_1_19:19758004-19758388:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2825927734375	2	533.320786	1064.62702	0.23871	0.00012731	-3.2235	-0.0017192	-2.9848	-0.0015919	533.3191194484119	106.36	0.2855	106.2	106.05	106.33	-0.16133					18	12	2	0	0	0	0.03519	1	13214	13214		45.952	10.751	1	48381			15945	14830	11332	11352	17250	17250					0.09728978522161924
FIPQGDVNL	9	Unmodified	_FIPQGDVNL_					0	0	0			REV__nc|ENSG00000134086|P40337-3|VHL	REV__nc|ENSG00000134086|P40337-3|VHL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7777099609375	2	501.766374	1001.5182	0.4986	0.00025018	-0.25461	-0.00012776	0.24398	0.00012242	501.7680018972623	72.305	0.56316	72.024	71.658	72.221	-0.28124					23	14	3	0	0	0	0.023817	1	8699	8699		82.305	0	1	148240	+		15946	23420	11333	11353	17251	17251					0.01749767551905279
FIPREVKVL	9	Unmodified	_FIPREVKVL_					0	0	0		ENST00000483138.5_1_1:33093465-33116130:-|nuORF;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000483138.5_1_1:33093465-33116130:-|nuORF	ENST00000483138.5_1_1:33093465-33116130:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.8449096679688	2	550.844959	1099.67537	0.44802	0.00024679	-0.42153	-0.0002322	0.026486	1.459E-05	550.8445769477269	82.764	0.69406	82.544	82.173	82.867	-0.22015					37	15	3	0	0	0	0.53979	1	9971	9971		56.721	7.2795	1	641460			15947	8628	11334	11354	17252	17252					0.1295147216208079
FIPREVKVL	9	Unmodified	_FIPREVKVL_					0	0	0		ENST00000483138.5_1_1:33093465-33116130:-|nuORF;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000483138.5_1_1:33093465-33116130:-|nuORF	ENST00000483138.5_1_1:33093465-33116130:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	550.844959	1099.67537	0.1921	0.00010582	-0.21062	-0.00011602	-0.018518	-1.02E-05	550.8447078299653	82.703	0.64977	82.522	82.201	82.85	-0.18079	-0.007893	-0.00011157	NaN	56.721	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562220			15948	8628	11334	11354							0.1295147216208079
FIPREVKVL	9	Unmodified	_FIPREVKVL_					0	0	0		ENST00000483138.5_1_1:33093465-33116130:-|nuORF;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000483138.5_1_1:33093465-33116130:-|nuORF	ENST00000483138.5_1_1:33093465-33116130:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	550.844959	1099.67537	-0.55884	-0.00030783	0.44339	0.00024424	-0.11544	-6.3592E-05	550.8449713845737	82.665	0.86295	82.525	82.216	83.079	-0.14014	-0.0053714	0.00060895	NaN	56.721	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550490			15949	8628	11334	11354							0.1295147216208079
FIPVIEIVP	9	Unmodified	_FIPVIEIVP_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8146362304688	2	513.815336	1025.61612	-0.92021	-0.00047282	0.9197	0.00047256	-0.00050435	-2.5914E-07	513.8158727691498	44.962	1.1631	44.814	44.523	45.686	-0.1488					95	33	4	0	0	0	0.80658	1	4321	4321		38.806	3.6054	1	23522000			15950	3357	11335	11355	17253	17253					0.10433576147875101
FIPVIEIVP	9	Unmodified	_FIPVIEIVP_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8152465820312	2	513.815336	1025.61612	-0.60319	-0.00030993	0.70335	0.00036139	0.10016	5.1465E-05	513.8157341182409	44.832	1.1662	44.869	44.578	45.744	0.036903					92	33	5	0	0	0	0.90698	1	4252	4252		31.955	1.4512	1	19795000			15951	3357	11335	11355	17254	17254					0.10433576147875101
FIQADIAAAV	10	Unmodified	_FIQADIAAAV_					0	0	0			REV__ENST00000413059.1_1_X:57419910-57420861:-|nuORF	REV__ENST00000413059.1_1_X:57419910-57420861:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7817687988281	2	509.782025	1017.5495	-1.1702	-0.00059657	-0.049827	-2.5401E-05	-1.2201	-0.00062197	509.7818890467402	43.816	0.60928	43.816	43.511	44.12	0					53	16	4	0	0	0	0.61732	1	4151	4151		75.043	5.4157	1	4575800	+		15952	32017	11336	11356	17255	17255					0.041423405859859486
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2916870117188	2	550.292756	1098.57096	-0.10727	-5.9027E-05	-1.0001	-0.00055035	-1.1074	-0.00060938	550.291853025411	65.388	1.0253	65.388	65.158	66.184	0					85	27	4	0	0	0	0.041068	1	7767	7767		132.76	39.562	1	2966200			15953	4534	11337	11357	17256	17256					0.025617256147143053
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.2931518554688	2	550.292756	1098.57096	-0.54528	-0.00030006	-0.2718	-0.00014957	-0.81708	-0.00044963	550.2925220329697	65.815	1.0555	65.542	65.126	66.181	-0.27282					76	26	4	0	0	0	0.015752	2	7785	7773;7785		158.07	67.474	1	3851000			15954	4534	11337	11357	17257;17258	17258					0.025617256147143053
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.292236328125	2	550.292756	1098.57096	-0.42299	-0.00023277	-0.81001	-0.00044574	-1.233	-0.00067851	550.2919889800178	65.5	0.98977	65.537	65.254	66.244	0.037376					89	26	5	0	0	0	0.015752	1	7689	7689		158.07	62.259	1	3660200			15955	4534	11337	11357	17259	17259					0.025617256147143053
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.292756	1098.57096	-0.30558	-0.00016816	0.54444	0.0002996	0.23886	0.00013144	550.2927985642705	65.794	1.1716	65.552	65.167	66.338	-0.24145	0.040245	0.00044528	NaN	158.07	48	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657600			15956	4534	11337	11357							0.025617256147143053
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.292756	1098.57096	-1.0225	-0.00056267	1.0193	0.00056094	-0.0031575	-1.7376E-06	550.292925339767	65.732	1.0166	65.519	65.215	66.232	-0.21327	0.0070744	0.00096795	NaN	158.07	48	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674690			15957	4534	11337	11357							0.025617256147143053
FIQKVGTITL	10	Unmodified	_FIQKVGTITL_					0	0	0		ENST00000374059.7_1_9:117188078-117188264:-|nuORF	ENST00000374059.7_1_9:117188078-117188264:-|nuORF	ENST00000374059.7_1_9:117188078-117188264:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3396606445312	2	560.342249	1118.66995	-0.14841	-8.3159E-05	-3.8046	-0.0021319	-3.9531	-0.0022151	560.339968220762	101.14	1.958	101.14	100.73	102.69	0					150	44	6	0	0	0	0.94316	1	12991	12991		51.193	3.5354	1	14784000			15958	13097	11338	11358	17260	17260					0.11535748579603933
FIQRSTAGT	9	Unmodified	_FIQRSTAGT_					0	0	0		ENSG00000152208|ENST00000282020|GRID2;GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant;GRID2|p.N607Kfs*56|1|0.12|ENSG00000152208|chr4:93455934-93455935|-/A|frameshift_variant;ENST00000505687.5_1_4:93225807-94138074:+|nuORF;ENST00000515744.5_1_4:93744106-94033158:+|nuORF;GRID2|p.H116Q|1|0.51|ENSG00000152208|chr4:93085098-93085098|C/A|missense_variant	ENSG00000152208|ENST00000282020|GRID2	ENSG00000152208|ENST00000282020|GRID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.258056640625	2	490.761623	979.508694	0.0051367	2.5209E-06	-4.3948	-0.0021568	-4.3897	-0.0021543	490.7595171370964	102.37	0.77493	102.36	102.02	102.79	-0.0054474					34	17	2	0	0	0	0.024427	1	13038	13038		19.997	0	1	201600			15959	6253	11339	11359	17261	17261					0.01811999266362818
FIQSLCLVN	9	Unmodified	_FIQSLCLVN_					0	0	0			REV__ENST00000537136.1_1_12:31255149-31256026:+|nuORF	REV__ENST00000537136.1_1_12:31255149-31256026:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7786254882812	2	518.778428	1035.5423	-1.2527	-0.0006499	2.8028	0.001454	1.55	0.00080412	518.7799357934764	85.734	0.76526	85.758	85.697	86.462	0.023666					32	17	3	0	0	0	0.5973	1	10700	10700		52.937	6.9645	1	1446000	+		15960	34694	11340	11360	17262	17262					0.025952847139024016
FIQYWDREKKR	11	Unmodified	_FIQYWDREKKR_					0	0	0			REV__ENST00000604273.1_2_1:145515521-145515950:-|nuORF	REV__ENST00000604273.1_2_1:145515521-145515950:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.95166015625	3	523.615925	1567.82595	4.095	0.0021442	2.3571	0.0012342	6.4521	0.0033784	523.6171113260193	17.864	0.39646	17.614	17.421	17.817	-0.25049					19	7	4	0	0	0	1.0834	1	210	210		15.921	5.8168	1	63121	+		15961	30224	11341	11361	17263	17263					0.06474587082880134
FIREKGKSV	9	Unmodified	_FIREKGKSV_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;MSH6|p.E528*|1|0.12|ENSG00000116062|chr2:47799562-47799575|CTGGAAGGTGATCC/-|frameshift_variant;ENST00000538136.1_1_2:48011218-48025765:+|nuORF	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.31640625	2	532.316566	1062.61858	0.21535	0.00011463	-0.72811	-0.00038758	-0.51276	-0.00027295	532.3160888136841	21.886	0.76096	21.709	21.397	22.158	-0.17721					35	15	3	0	0	0	0.5973	1	722	722		52.937	6.9645	1	713370			15962	3516	11342	11362	17264	17264					0.0897742460556401
FIREKGKSV	9	Unmodified	_FIREKGKSV_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;MSH6|p.E528*|1|0.12|ENSG00000116062|chr2:47799562-47799575|CTGGAAGGTGATCC/-|frameshift_variant;ENST00000538136.1_1_2:48011218-48025765:+|nuORF	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.3162841796875	2	532.316566	1062.61858	-0.8327	-0.00044326	0.36786	0.00019582	-0.46484	-0.00024744	532.3166681288567	22.068	0.61998	21.877	21.564	22.184	-0.19072					37	12	4	0	0	0	0.2508	2	749	737;749		82.241	5.4664	1	760410			15963	3516	11342	11362	17265;17266	17266					0.0897742460556401
FIREKGKSV	9	Unmodified	_FIREKGKSV_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;MSH6|p.E528*|1|0.12|ENSG00000116062|chr2:47799562-47799575|CTGGAAGGTGATCC/-|frameshift_variant;ENST00000538136.1_1_2:48011218-48025765:+|nuORF	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.3161010742188	2	532.316566	1062.61858	-0.69178	-0.00036824	0.26506	0.00014109	-0.42672	-0.00022715	532.3166006205864	21.986	0.72278	21.784	21.517	22.24	-0.20199					40	14	4	0	0	0	0.5973	2	707	707;719		52.937	3.4952	1	707040			15964	3516	11342	11362	17267;17268	17267					0.0897742460556401
FIRGKPIRFGY	11	Unmodified	_FIRGKPIRFGY_					0	0	0		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.93267822265625	3	451.931185	1352.77173	0.7506	0.00033922	2.6981	0.0012194	3.4487	0.0015586	451.9323062190874	96.976	2.291	96.984	95.564	97.855	0.0089111					165	52	5	0	0	0	1.0592	1	12409	12409		22.562	4.7284	1	646190			15965	18734	11343	11363	17269	17269					0.10945039722014371
FIRKFVKIL	9	Unmodified	_FIRKFVKIL_					0	0	0		ENST00000332211.10_2_10:76980682-76982077:+|nuORF	ENST00000332211.10_2_10:76980682-76982077:+|nuORF	ENST00000332211.10_2_10:76980682-76982077:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.3533935546875	2	582.386794	1162.75904	0.23716	0.00013812	1.3785	0.00080285	1.6157	0.00094096	582.3864978688493	102.36	0.19696	102.23	102.11	102.31	-0.12931					6	4	2	0	0	0	0.024541	1	12701	12701		11.511	0	1	16520			15966	12353	11344	11364	17270	17270					0.18416628329805462
FIRKGTASP	9	Unmodified	_FIRKGTASP_					0	0	0			REV__ENST00000372991.8_1_6:41902903-41903062:-|nuORF	REV__ENST00000372991.8_1_6:41902903-41903062:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7844543457031	2	488.782359	975.550165	0.16432	8.0315E-05	-0.88068	-0.00043046	-0.71637	-0.00035015	488.7818646070015	40.311	1.7687	40.311	39.627	41.396	0					137	49	4	0	0	0	0.4752	1	3559	3559		60.972	0	1	10770000	+		15967	31226	11345	11365	17271	17271					0.06141180025701942
FIRKNDLIK	9	Unmodified	_FIRKNDLIK_					0	0	0		ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.8534545898438	2	573.853316	1145.69208	-0.13364	-7.6688E-05	-0.31129	-0.00017863	-0.44492	-0.00025532	573.853028695282	64.073	0.87115	63.845	63.549	64.42	-0.22773					61	21	4	0	0	0	0.87448	1	7268	7268		34.173	0	1	3417800			15968	10904	11346	11366	17272	17272					0.1250597304801886
FIRNLHDAL	9	Unmodified	_FIRNLHDAL_					0	0	0		ELP3-MYO5C|1|fusion;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-4|ELP3	ELP3-MYO5C|1|fusion	ELP3-MYO5C|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.8555297851562	2	549.806365	1097.59818	-0.6652	-0.00036573	-2.5565	-0.0014056	-3.2217	-0.0017713	550.3060137664049	80.065	0.54505	80.065	79.744	80.289	0					16	12	2	0	0	0	0.024209	1	9909	9909		66.429	13.078	1	240050			15969	703	11347	11367	17273	17273					0.05328253945731376
FIRQNPPIL	9	Unmodified	_FIRQNPPIL_					0	0	0			REV__ENST00000381322.5_1_4:56376111-56411651:-|nuORF	REV__ENST00000381322.5_1_4:56376111-56411651:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3027954101562	2	549.326934	1096.63931	-0.55929	-0.00030723	3.4753	0.001909	2.916	0.0016018	549.3284756699184	78.761	0.293	78.761	78.7	78.993	0					10	6	2	0	0	0	0.024436	1	9788	9788		23.042	3.939	1	68702	+		15970	31512	11348	11368	17274	17274					0.09486014985213842
FIRRIGVM	8	Unmodified	_FIRRIGVM_					0	0	0			REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.296630859375	2	496.297122	990.579691	0.19791	9.822E-05	-3.7794	-0.0018757	-3.5815	-0.0017775	496.2950366507731	66.621	0.57649	66.621	66.434	67.01	0					29	14	3	0	0	0	1.0574	1	7927	7927		15.636	2.677	1	1348300	+		15971	22165	11349	11369	17275	17275					0.0840242077019866
FIRRPAII	8	Unmodified	_FIRRPAII_					0	0	0			REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30718994140625	2	493.318912	984.62327	0.23482	0.00011584	3.5009	0.0017271	3.7358	0.0018429	493.3201094059364	101.01	0.21583	101.01	100.86	101.08	0					6	4	2	0	0	0	0.027866	1	12913	12913		37.028	10.232	1	51441	+		15972	36849	11350	11370	17276	17276					0.13034353538989762
FIRSLPGLP	9	Unmodified	_FIRSLPGLP_					0	0	0		nc|ENSG00000134686|Q8IXK0-3|PHC2;ENST00000485928.5_1_1:33791428-33799821:-|nuORF	nc|ENSG00000134686|Q8IXK0-3|PHC2	nc|ENSG00000134686|Q8IXK0-3|PHC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.82379150390625	2	500.302927	998.591301	-0.34549	-0.00017285	-1.8663	-0.00093372	-2.2118	-0.0011066	500.3056585803913	33.635	0.29055	33.635	33.487	33.777	0					14	7	3	0	0	0	0.024381	1	2455	2455		37.159	0	1	54604			15973	15334	11351	11371	17277	17277					0.09194941065175044
FIRSLPGLP	9	Unmodified	_FIRSLPGLP_					0	0	0		nc|ENSG00000134686|Q8IXK0-3|PHC2;ENST00000485928.5_1_1:33791428-33799821:-|nuORF	nc|ENSG00000134686|Q8IXK0-3|PHC2	nc|ENSG00000134686|Q8IXK0-3|PHC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.302927	998.591301	-0.15815	-7.9125E-05	-5.6325	-0.002818	-5.7907	-0.0028971	500.30026911583656	33.494	0.16077	33.263	33.153	33.314	-0.23107	-0.186	-0.0035423	NaN	37.159	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46134			15974	15334	11351	11371							0.09194941065175044
FISDPVASA	9	Unmodified	_FISDPVASA_					0	0	0		ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	ENST00000313285.12_1_19:6751225-6751516:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.2181396484375	2	453.732	905.449448	0.18872	8.5627E-05	0.3154	0.00014311	0.50412	0.00022873	453.7318140134165	59.194	0.60973	59.006	58.779	59.389	-0.18795					23	14	3	0	0	0	0.024323	1	6564	6564		20.947	10.081	1	266830			15975	12095	11352	11372	17278	17278					-0.007058967478201339
FISEATVEK	9	Unmodified	_FISEATVEK_					0	0	0		ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.270751953125	2	512.27149	1022.52843	0.53902	0.00027612	-1.7123	-0.00087719	-1.1733	-0.00060106	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	0.92825	1	13252	13252		30.504	0	1	5030900			15976	4488	11353	11373	17279	17279					0.018063304864767815
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.308349609375	2	550.310949	1098.60735	-0.76982	-0.00042364	-1.4659	-0.00080669	-2.2357	-0.0012303	550.3096778798188	73.265	0.83057	73.265	72.825	73.655	0					56	21	5	0	0	0	0.014034	2	8928	8928;8943		166.68	58.591	1	3589500			15977	2986	11354	11374	17280;17281	17280					0.06198602511426543
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3086547851562	2	550.310949	1098.60735	-0.70372	-0.00038726	-2.2559	-0.0012415	-2.9596	-0.0016287	550.3095036068802	73.568	0.76861	73.296	72.842	73.611	-0.27126					56	19	4	0	0	0	0.03201	3	8944	8933;8944;8957		139.97	54.81	1	3342900			15978	2986	11354	11374	17282;17283;17284	17283					0.06198602511426543
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MSMS	OPSCC_39_ClassI_Rep-3	3	550.3074951171875	2	550.310949	1098.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.212	1	73.222	72.722	73.722	0.0096512								0	0	0	0.014478	1	8855	8855		139.97	46.775	1				15979	2986	11354	11374	17285	17285					0.06198602511426543
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MSMS	OPSCC_39_ClassI_Rep-3	3	550.309326171875	2	550.310949	1098.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.291	1	73.301	72.801	73.801	0.0096512								0	0	0	0.022316	1	8868	8868		127.46	36.685	1				15980	2986	11354	11374	17286	17286					0.06198602511426543
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.3103637695312	2	550.310949	1098.60735	-0.29813	-0.00016406	-0.33892	-0.00018651	-0.63705	-0.00035057	550.3106876867719	73.512	0.82855	73.235	72.926	73.755	-0.2769					62	20	4	0	0	0	0.020687	3	8645	8634;8645;8658		148.99	53.172	1	2704300			15981	2986	11354	11374	17287;17288;17289	17288					0.06198602511426543
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.3104248046875	2	550.310949	1098.60735	-0.44834	-0.00024673	-0.41589	-0.00022887	-0.86423	-0.00047559	550.3107396223851	73.493	0.83517	73.229	72.852	73.687	-0.26479					71	20	5	0	0	0	0.013293	2	8647	8647;8661		176.09	39.819	1	2597300			15982	2986	11354	11374	17290;17291	17290					0.06198602511426543
FISEIIHQL	9	Unmodified	_FISEIIHQL_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.3111572265625	2	550.310949	1098.60735	-0.42217	-0.00023232	-0.3594	-0.00019778	-0.78157	-0.00043011	550.3107054487317	73.266	1.0465	73.075	72.675	73.722	-0.19026					70	25	4	0	0	0	0.014918	2	8622	8608;8622		162.25	62.878	1	2242300			15983	2986	11354	11374	17292;17293	17293					0.06198602511426543
FISGRRSRS	9	Unmodified	_FISGRRSRS_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.280517578125	2	533.299239	1064.58392	-0.45002	-0.00023999	2.3635	0.0012604	1.9134	0.0010204	533.3005359497938	54.473	0.37624	54.228	54.103	54.479	-0.2453					17	10	2	0	0	0	0.0245	1	5767	5767		44.377	3.599	1	215910			15984	11033;17978	11355	11375	17294	17294					0.05421601517468844
FISLRSARQW	10	Unmodified	_FISLRSARQW_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|69|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|69|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|69|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.5206298828125	3	421.903406	1262.68839	0.2374	0.00010016	-0.30367	-0.00012812	-0.066269	-2.7959E-05	422.2376520112708	31.979	0.90306	31.788	31.433	32.336	-0.19146					46	20	3	0	0	0	0.03519	1	2153	2153		65.157	20.518	1	384560			15985	17853	11356	11376	17295	17295					0.0675530327416709
FISRLQFP	8	Unmodified	_FISRLQFP_					0	0	0		ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.3055725097656	2	504.287277	1006.56	0.0724	3.6511E-05	-3.0019	-0.0015138	-2.9295	-0.0014773	504.28568208331535	68.965	0.46304	68.673	68.326	68.789	-0.29267					17	11	2	0	0	0	0.027866	1	8201	8201		50.025	19.521	1	149630			15986	15537	11357	11377	17296	17296					0.05698368031096379
FISRLQFP	8	Unmodified	_FISRLQFP_					0	0	0		ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.287277	1006.56	0.20354	0.00010264	-3.1287	-0.0015777	-2.9251	-0.0014751	504.2856978205616	68.611	0.37105	68.63	68.462	68.833	0.018913	-0.021263	-6.898E-05	NaN	50.025	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147200			15987	15537	11357	11377							0.05698368031096379
FISVTVSWLL	10	Unmodified	_FISVTVSWLL_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF;REV__nc|ENSG00000109667|Q9NRM0-2|SLC2A9	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.8331909179688	2	582.8368	1163.65905	-0.86533	-0.00050435	-2.9012	-0.0016909	-3.7665	-0.0021953	582.8350238982512	75.059	0.90402	74.796	74.489	75.393	-0.26326					55	21	4	0	0	0	0.52982	1	8883	8883		84.916	21.489	1	2364400	+		15988	34001;21805	11358	11378	17297	17297					0.08376346205318441
FISVTVSWLL	10	Unmodified	_FISVTVSWLL_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF;REV__nc|ENSG00000109667|Q9NRM0-2|SLC2A9	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.8323974609375	2	582.8368	1163.65905	-0.13088	-7.628E-05	-3.7488	-0.0021849	-3.8797	-0.0022612	582.8345282702907	74.885	0.91173	74.702	74.393	75.305	-0.18279					62	21	5	0	0	0	0.50466	1	8849	8849		87.754	6.2293	1	1974300	+		15989	34001;21805	11358	11378	17298	17298					0.08376346205318441
FITDFYTTV	9	Unmodified	_FITDFYTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.774658203125	2	553.773865	1105.53318	0.45749	0.00025334	-0.69726	-0.00038613	-0.23978	-0.00013278	553.773505471645	84.767	1.368	84.767	84.258	85.626	0					86	32	4	0	0	0	0.13494	3	10607	10607;10620;10632		102.77	35.28	1	1736200			15990	9957	11359	11379	17299;17300;17301	17299					-0.015367853707857648
FITDFYTTV	9	Unmodified	_FITDFYTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.7742919921875	2	553.773865	1105.53318	-0.90598	-0.00050171	0.74163	0.00041069	-0.16435	-9.1015E-05	553.7742729275421	84.735	1.1201	84.662	84.178	85.298	-0.072769					78	26	4	0	0	0	0.17455	2	10578	10578;10591		94.006	38.188	1	1580100			15991	9957	11359	11379	17302;17303	17302					-0.015367853707857648
FITDFYTTV	9	Unmodified	_FITDFYTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.7737426757812	2	553.773865	1105.53318	-0.4445	-0.00024615	0.22704	0.00012573	-0.21746	-0.00012043	553.7740274911052	84.668	1.3704	84.693	84.248	85.618	0.025536					77	32	4	0	0	0	0.33245	1	10537	10537		71.296	14.575	1	1799100			15992	9957	11359	11379	17304	17304					-0.015367853707857648
FITDFYTTV	9	Unmodified	_FITDFYTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.773865	1105.53318	0.37751	0.00020906	0.72214	0.0003999	1.0996	0.00060896	553.7740381335009	84.784	0.62455	84.581	84.294	84.919	-0.20329	-0.087338	0.0008485	NaN	102.77	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266330			15993	9957	11359	11379							-0.015367853707857648
FITDFYTTV	9	Unmodified	_FITDFYTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.773865	1105.53318	0.74572	0.00041296	0.075393	4.175E-05	0.82111	0.00045471	553.7738200024359	84.787	0.61893	84.628	84.279	84.898	-0.15868	-0.039474	0.00013219	NaN	102.77	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310100			15994	9957	11359	11379							-0.015367853707857648
FITDFYTTV	9	Unmodified	_FITDFYTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.773865	1105.53318	0.42439	0.00023502	-0.13506	-7.479E-05	0.28934	0.00016023	553.7737829950885	84.814	0.91731	84.676	84.237	85.155	-0.13789	0.008013	-0.00010089	NaN	102.77	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243440			15995	9957	11359	11379							-0.015367853707857648
FITIHDRGHI	10	Unmodified	_FITIHDRGHI_					0	0	0		nc|ENSG00000065833|P48163-2|ME1;ENSG00000065833|ENST00000369705|ME1	nc|ENSG00000065833|P48163-2|ME1	nc|ENSG00000065833|P48163-2|ME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5548400878906	3	403.556007	1207.64619	0.92482	0.00037322	-4.1444	-0.0016725	-3.2196	-0.0012993	403.5541443678137	22.267	1.3591	22.078	21.434	22.793	-0.18894					67	28	4	0	0	0	1.1161	1	792	792		30.569	1.9921	1	1469800			15996	1320	11360	11380	17305	17305					0.05067327865799598
FITLQIHF	8	Unmodified	_FITLQIHF_					0	0	0		SPG11|p.L2297F|1|0.12|ENSG00000104133|chr15:44565962-44565962|C/G|missense_variant	SPG11|p.L2297F|1|0.12|ENSG00000104133|chr15:44565962-44565962|C/G|missense_variant	SPG11|p.L2297F|1|0.12|ENSG00000104133|chr15:44565962-44565962|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.77471923828125	2	509.789653	1017.56475	-0.79925	-0.00040745	-3.975	-0.0020264	-4.7742	-0.0024339	509.7874092866711	44.866	0.58855	44.655	44.399	44.988	-0.21109					40	14	4	0	0	0	0.027866	1	4168	4168		30.504	3.7075	1	1559300			15997	37960	11361	11381	17306	17306					0.05667252173839188
FITLRPSPKA	10	Unmodified	_FITLRPSPKA_					0	0	0			REV__ENSG00000118960|ENST00000304031|HS1BP3	REV__ENSG00000118960|ENST00000304031|HS1BP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.2363891601562	2	565.340041	1128.66553	0.052474	2.9666E-05	-0.76811	-0.00043425	-0.71564	-0.00040458	565.3392862085495	46.247	0.4078	46.15	45.923	46.331	-0.096649					20	10	3	0	0	0	0.03519	1	4424	4424		31.53	0	1	391280	+		15998	22431	11362	11382	17307	17307					0.1063428415668568
FITMIGSI	8	Unmodified	_FITMIGSI_					0	0	0		CACNA1E|p.V1550M|1|0.27|ENSG00000198216|chr1:181762616-181762616|G/A|missense_variant	CACNA1E|p.V1550M|1|0.27|ENSG00000198216|chr1:181762616-181762616|G/A|missense_variant	CACNA1E|p.V1550M|1|0.27|ENSG00000198216|chr1:181762616-181762616|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.23541259765625	2	441.243689	880.472826	-0.17596	-7.7642E-05	3.7287	0.0016453	3.5527	0.0015676	441.2457211408267	34.04	0.87079	34.04	33.421	34.292	0					45	22	4	0	0	0	0.027866	1	2520	2520		86.935	40.962	1	343190			15999	204	11363	11383	17308	17308					0.027808257651599888
FITMPRAL	8	Unmodified	_FITMPRAL_					0	0	0			REV__ENST00000504143.6_1_5:108084665-108103908:+|nuORF	REV__ENST00000504143.6_1_5:108084665-108103908:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.3004150390625	2	474.770406	947.526258	-0.52416	-0.00024886	3.8952	0.0018493	3.371	0.0016005	474.77215743774	39.544	0.70281	39.568	39.349	40.052	0.023727					43	19	3	0	0	0	0.027866	1	3374	3374		44.117	9.9443	1	905110	+		16000	33975	11364	11384	17309	17309					0.05039623267668958
FITVVNRDH	9	Unmodified	_FITVVNRDH_					0	0	0			REV__ENSG00000113575|ENST00000481195|PPP2CA	REV__ENSG00000113575|ENST00000481195|PPP2CA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2454833984375	2	550.795998	1099.57744	0.19267	0.00010612	-2.516	-0.0013858	-2.3233	-0.0012797	550.7946512440715	78.947	1.0563	78.715	78.134	79.19	-0.23141					45	24	2	0	0	0	0.024323	1	9360	9360		53.351	2.016	1	464300	+		16001	21456	11365	11385	17310	17310					0.03163663566078867
FITYHILI	8	Unmodified	_FITYHILI_					0	0	0		ENST00000370331.5_1_1:93201975-93202140:-|nuORF	ENST00000370331.5_1_1:93201975-93202140:-|nuORF	ENST00000370331.5_1_1:93201975-93202140:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7872619628906	2	510.299853	1018.58515	-0.93891	-0.00047913	-4.0542	-0.0020689	-4.9932	-0.002548	510.2975018808044	60.398	0.55059	60.398	60.256	60.807	0					39	14	4	0	0	0	0.027866	1	6926	6926		28.254	0.17279	1	2807600			16002	12956	11366	11386	17311	17311					0.07660422833657776
FIVAFSSLL	9	Unmodified	_FIVAFSSLL_					0	0	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.79022216796875	2	498.791861	995.569169	0.15985	7.9732E-05	-4.0397	-0.002015	-3.8798	-0.0019352	498.7896825851456	68.866	0.72139	68.573	68.289	69.01	-0.29267					49	18	4	0	0	0	0.14199	1	8241	8241		101.21	16.296	1	2023000	+		16003	24434	11367	11387	17312	17312					0.07120716596762122
FIVAFSSLL	9	Unmodified	_FIVAFSSLL_					0	0	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	498.791861	995.569169	0.15985	7.9732E-05	-4.0397	-0.002015	-3.8798	-0.0019352	498.7896825851456	68.866	0.72139	68.573	68.289	69.01	-0.29267	-0.015239	4.2763E-05	NaN	101.21	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2023000	+		16004	24434	11367	11387							0.07120716596762122
FIVAFSSLL	9	Unmodified	_FIVAFSSLL_					0	0	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.791861	995.569169	0.27656	0.00013794	-3.934	-0.0019622	-3.6574	-0.0018243	498.789640393117	68.584	0.70374	68.603	68.353	69.057	0.018913	0.01485	0.00014825	NaN	101.21	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1600800	+		16005	24434	11367	11387							0.07120716596762122
FIVAFSSLL	9	Unmodified	_FIVAFSSLL_					0	0	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.791861	995.569169	-0.96811	-0.00048289	-4.1172	-0.0020536	-5.0854	-0.0025365	498.79003386515615	68.891	0.65965	68.629	68.341	69.001	-0.26166	0.040634	-3.4601E-05	NaN	101.21	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377190	+		16006	24434	11367	11387							0.07120716596762122
FIVAFSSLL	9	Unmodified	_FIVAFSSLL_					0	0	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.791861	995.569169	0.28555	0.00014243	-5.2107	-0.0025991	-4.9252	-0.0024566	498.78948281682204	68.84	0.65093	68.598	68.307	68.958	-0.24277	0.009136	-0.0011254	NaN	101.21	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446780	+		16007	24434	11367	11387							0.07120716596762122
FIVAFSSLL	9	Unmodified	_FIVAFSSLL_					0	0	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.791861	995.569169	-0.15003	-7.4831E-05	-5.3902	-0.0026886	-5.5402	-0.0027634	498.7895137898848	68.818	0.81682	68.587	68.195	69.012	-0.23048	-0.0013252	-0.0013044	NaN	101.21	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403230	+		16008	24434	11367	11387							0.07120716596762122
FIVALNQMSI	10	Unmodified	_FIVALNQMSI_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.7947387695312	2	568.312635	1134.61072	0.54022	0.00030701	0.35994	0.00020456	0.90016	0.00051157	568.3119723137702	72.556	0.48093	72.274	72.025	72.506	-0.28124					13	11	2	0	0	0	0.03519	1	8825	8825		42.864	20.904	1	51299	+		16009	22001	11368	11388	17313	17313					0.048795292937711565
FIVELRQLS	9	Unmodified	_FIVELRQLS_					0	0	0		nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7940063476562	2	552.824224	1103.63389	-0.52685	-0.00029126	-0.041785	-2.31E-05	-0.56864	-0.00031436	552.8240872954403	66.252	0.65974	66.006	65.691	66.351	-0.24517					35	16	3	0	0	0	0.024511	1	7584	7584		32.812	18.675	1	494930			16010	18296	11369	11389	17314	17314					0.08622291402753035
FIVIERNLD	9	Unmodified	_FIVIERNLD_					0	0	0			REV__ENST00000292823.6_1_3:195965176-195965440:-|nuORF	REV__ENST00000292823.6_1_3:195965176-195965440:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2979125976562	2	559.813856	1117.61316	-0.45784	-0.0002563	3.6176	0.0020252	3.1597	0.0017689	559.8157898177741	96.334	2.2761	96.178	95.532	97.808	-0.15646					94	51	4	0	0	0	0.024477	1	12081	12081		35.618	6.4687	1	510620	+		16011	29954	11370	11390	17315	17315					0.05905701023084475
FIVKRLLTK	9	Unmodified	_FIVKRLLTK_					0	0	0			REV__ENST00000274376.10_1_5:86658440-86658479:+|nuORF	REV__ENST00000274376.10_1_5:86658440-86658479:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.3344116210938	2	559.376426	1116.7383	-1.6215	-0.00090703	-3.8149	-0.0021339	-5.4364	-0.003041	559.3745774684153	51.872	0.18209	51.603	51.438	51.62	-0.26903					6	4	2	0	0	0	0.024541	1	5319	5319		25.574	2.5316	1	111260	+		16012	29829	11371	11391	17316	17316					0.18460037950126207
FIVKSTVQL	9	Unmodified	_FIVKSTVQL_					0	0	0			REV__nc|ENSG00000006576|Q8N3S3-4|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7930297851562	2	517.815867	1033.61718	0.36738	0.00019024	-0.70327	-0.00036416	-0.33589	-0.00017393	517.8153338604404	64.19	0.59218	64.19	64.062	64.654	0					41	15	4	0	0	0	0.024367	1	7549	7549		52.937	10.462	1	3262600	+		16013	19834	11372	11392	17317	17317					0.10171790516801593
FIVLMILL	8	Unmodified	_FIVLMILL_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.79736328125	2	481.311375	960.608197	0.14193	6.8313E-05	3.607	0.0017361	3.7489	0.0018044	481.3129679250778	68.529	0.98985	68.529	67.987	68.977	0					60	25	3	0	0	0	0.027866	1	8267	8267		33.493	0	1	1651900			16014	7940	11373	11393	17318	17318					0.12631725626783918
FIVLSMVSF	9	Unmodified	_FIVLSMVSF_					0	0	0			REV__ENST00000361804.4_1_10:112328768-112337656:+|nuORF	REV__ENST00000361804.4_1_10:112328768-112337656:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7855834960938	2	521.785721	1041.55689	0.24651	0.00012862	-3.0812	-0.0016077	-2.8347	-0.0014791	521.7842147745753	69.921	0.78505	69.67	69.358	70.143	-0.25063					37	18	3	0	0	0	0.22754	1	8148	8148		85.359	19.556	1	2006200	+		16015	30951	11374	11394	17319	17319					0.03777356862065062
FIVLSMVSF	9	Unmodified	_FIVLSMVSF_					0	0	0			REV__ENST00000361804.4_1_10:112328768-112337656:+|nuORF	REV__ENST00000361804.4_1_10:112328768-112337656:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7844848632812	2	521.785721	1041.55689	0.14121	7.3684E-05	-2.9799	-0.0015548	-2.8386	-0.0014812	521.7843020030181	69.842	0.7808	69.62	69.307	70.087	-0.22246					45	18	5	0	0	0	0.40179	1	8123	8123		65.803	2.4969	1	2167500	+		16016	30951	11374	11394	17320	17320					0.03777356862065062
FIVLTEELL	9	Unmodified	_FIVLTEELL_					0	0	0			REV__nc|ENSG00000100299|P15289-2|ARSA	REV__nc|ENSG00000100299|P15289-2|ARSA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8023681640625	2	538.815533	1075.61651	-0.39273	-0.00021161	1.9743	0.0010638	1.5816	0.00085217	538.8167176571144	93.788	0.11806	93.788	93.73	93.848	0					4	2	2	0	0	0	0.024443	1	11919	11919		35.201	1.6851	1	123460	+		16017	21085	11375	11395	17321	17321					0.08172951077108337
FIVLTSVDTT	10	Unmodified	_FIVLTSVDTT_					0	0	0			REV__ENST00000508517.1_1_5:114938829-114955926:+|nuORF	REV__ENST00000508517.1_1_5:114938829-114955926:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8099975585938	2	548.300247	1094.58594	-0.5313	-0.00029131	-4.2229	-0.0023154	-4.7542	-0.0026067	548.7990872706678	54.471	0.18062	54.321	54.229	54.409	-0.15036					6	4	2	0	0	0	0.03519	1	5915	5915		27.882	4.3595	1	109990	+		16018	34068	11376	11396	17322	17322					0.042431726920540314
FIVPQSFGSP	10	Unmodified	_FIVPQSFGSP_					0	0	0			REV__nc|ENSG00000153071|P98082-2|DAB2	REV__nc|ENSG00000153071|P98082-2|DAB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8037109375	2	539.782025	1077.5495	-0.81624	-0.00044059	-3.1303	-0.0016897	-3.9465	-0.0021303	539.7801403972542	28.745	0.59978	28.576	28.254	28.854	-0.16897					22	13	2	0	0	0	0.03519	1	1729	1729		29.15	0.89528	1	429120	+		16019	24884	11377	11397	17323	17323					0.013823405859966442
FIVSGLLNC	9	Unmodified	_FIVSGLLNC_					0	0	0			REV__ENSG00000244165|ENST00000321826|P2RY11	REV__ENSG00000244165|ENST00000321826|P2RY11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7899475097656	2	483.259871	964.505189	-0.067698	-3.2716E-05	3.5583	0.0017196	3.4906	0.0016869	483.26136733160877	33.586	0.54046	33.642	33.35	33.89	0.056572					31	13	3	0	0	0	0.024535	1	2418	2418		12.207	0	1	328040	+		16020	28996	11378	11398	17324	17324					0.021516131681551087
FIVVSKIDL	9	Unmodified	_FIVVSKIDL_					0	0	0		nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2991333007812	2	517.318243	1032.62193	-0.13052	-6.7522E-05	2.3675	0.0012248	2.237	0.0011572	517.3192619937439	67.966	1.4502	67.966	67.606	69.056	0					96	37	4	0	0	0	0.022882	1	8106	8106		95.815	29.386	1	11420000			16021	8276	11379	11399	17325	17325					0.10692674659571821
FIVVSTGILV	10	Unmodified	_FIVVSTGILV_					0	0	0			REV__nc|ENSG00000240403|P43630-2|KIR3DL2	REV__nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3135986328125	2	524.326068	1046.63758	-0.51698	-0.00027107	3.0281	0.0015877	2.5111	0.0013166	524.3276666118379	73.636	0.10752	73.365	73.313	73.421	-0.27126					4	2	2	0	0	0	0.03519	1	8959	8959		45.952	8.7928	1	164090	+		16022	28960	11380	11400	17326	17326					0.116129611766155
FIVYQTQVQ	9	Unmodified	_FIVYQTQVQ_					0	0	0		ENST00000546629.1_1_12:108620775-108626860:+|nuORF;ENSG00000075035|ENST00000547525|WSCD2;nc|ENSG00000075035|Q2TBF2-2|WSCD2	ENST00000546629.1_1_12:108620775-108626860:+|nuORF	ENST00000546629.1_1_12:108620775-108626860:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8458862304688	2	563.300581	1124.58661	0.69195	0.00038978	1.9691	0.0011092	2.661	0.001499	563.3014640440999	63.099	0.68194	63.154	62.801	63.483	0.054104					43	17	3	0	0	0	0.024021	1	7250	7250		49.442	0	1	1146300			16023	1540	11381	11401	17327	17327					0.029300121317419325
FIWENIHTL	9	Unmodified	_FIWENIHTL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.8084106445312	2	586.808574	1171.60259	-0.80746	-0.00047383	0.15284	8.9685E-05	-0.65463	-0.00038414	586.8084776722443	75.992	1.4175	75.719	75.384	76.802	-0.27266					95	34	5	0	0	0	0.013924	5	8984	8975;8984;8996;9010;9023		167.23	76.859	1	7586900			16024	6240	11382	11402	17328;17329;17330;17331;17332	17329					0.023657183686509597
FIWENIHTL	9	Unmodified	_FIWENIHTL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.8082275390625	2	586.808574	1171.60259	-0.90744	-0.00053249	0.36608	0.00021482	-0.54136	-0.00031767	586.8086488431167	75.942	1.5383	75.684	75.398	76.936	-0.25866					99	37	5	0	0	0	0.015752	4	9001	8991;9001;9014;9027		158.07	75.834	1	7219700			16025	6240	11382	11402	17333;17334;17335;17336	17334					0.023657183686509597
FIWENIHTL	9	Unmodified	_FIWENIHTL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.8080444335938	2	586.808574	1171.60259	-0.46395	-0.00027225	-0.2638	-0.0001548	-0.72776	-0.00042705	586.8083140691994	75.758	1.698	75.583	75.194	76.892	-0.17548					100	41	5	0	0	0	0.01388	3	8961	8949;8961;8975		180.87	79.269	1	7703400			16026	6240	11382	11402	17337;17338;17339	17338					0.023657183686509597
FIWGPPPP	8	Unmodified	_FIWGPPPP_					0	0	0			REV__ENST00000434578.6_2_1:15480274-15537010:+|nuORF	REV__ENST00000434578.6_2_1:15480274-15537010:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2586669921875	2	455.744714	909.474875	0.016643	7.585E-06	0.46453	0.00021171	0.48117	0.00021929	455.74494801746135	33.786	0.43827	33.842	33.615	34.054	0.056568					14	10	2	0	0	0	0.027866	1	2401	2401		33.493	0	1	66385	+		16027	32424	11383	11403	17340	17340					0.016516225652708272
FIWYRGKW	8	Unmodified	_FIWYRGKW_					0	0	0		ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.7719116210938	2	578.308544	1154.60253	-0.18489	-0.00010693	-1.0883	-0.00062939	-1.2732	-0.00073632	578.3078243000882	56.631	0.61831	56.463	56.204	56.823	-0.1672					25	15	2	0	0	0	0.027866	1	6194	6194		28.254	0	1	501210			16028	1530	11384	11404	17341	17341					0.03141763159328548
FIWYRGKW	8	Unmodified	_FIWYRGKW_					0	0	0		ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.308544	1154.60253	-0.24154	-0.00013968	-0.9909	-0.00057305	-1.2324	-0.00071273	578.3076195094458	56.701	0.49538	56.499	56.288	56.783	-0.20208	0.0028846	0.00020728	NaN	28.254	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410050			16029	1530	11384	11404							0.03141763159328548
FIWYRGKW	8	Unmodified	_FIWYRGKW_					0	0	0		ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	578.308544	1154.60253	0.017812	1.0301E-05	-1.4509	-0.00083909	-1.4331	-0.00082879	578.3074725671281	56.75	0.50712	56.525	56.269	56.776	-0.2248	0.029532	-0.00032481	NaN	28.254	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446120			16030	1530	11384	11404							0.03141763159328548
FIYAPVLLYKL	11	Unmodified	_FIYAPVLLYKL_					0	0	0			REV__ENSG00000175548|ENST00000308742|ALG10B	REV__ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.2736511230469	3	447.272325	1338.79515	0.11818	5.2859E-05	1.2623	0.00056458	1.3805	0.00061744	447.27278940417534	106.28	1.1364	106.16	105.64	106.77	-0.1238					111	43	5	0	0	0	1.0465	1	13233	13233		26.063	0.9374	1	2232400	+		16031	26959	11385	11405	17342	17342					0.139300407159908
FIYHGEVPQA	10	Unmodified	_FIYHGEVPQA_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;CIITA|p.R550Wfs*5|1|0.07|ENSG00000179583|chr16:10907138-10907147|CCCGGGGCCG/-|frameshift_variant	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	580.7901000976562	2	580.790381	1159.56621	-0.91621	-0.00053213	1.0084	0.00058566	0.092166	5.3529E-05	580.7903990859439	51.48	1.0775	51.567	51.077	52.155	0.087009					72	29	4	0	0	0	0.40067	1	5390	5390		98.629	22.46	1	3434300			16032	8905	11386	11406	17343	17343					-0.007191585280452273
FIYKLATKKEV	11	Unmodified	_FIYKLATKKEV_					0	0	0			REV__ACVR2A|p.D96Tfs*54|1|0.22|ENSG00000121989|chr2:147899472-147899472|A/-|frameshift_variant	REV__ACVR2A|p.D96Tfs*54|1|0.22|ENSG00000121989|chr2:147899472-147899472|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.27325439453125	3	447.270984	1338.79112	0.79111	0.00035384	3.6625	0.0016381	4.4536	0.001992	447.27252393560246	106.17	0.60676	106.17	105.93	106.54	0					88	23	5	0	0	0	1.0501	1	13629	13629		25.068	0.79185	1	2219100	+		16033	19058	11387	11407	17344	17344					0.1352795122227235
FIYTIYTLL	9	Unmodified	_FIYTIYTLL_					0	0	0		ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2791137695312	2	573.825901	1145.63725	0.64592	0.00037065	4.0519	0.0023251	4.6978	0.0026957	573.8291097995468	77.831	0.46075	77.589	77.405	77.866	-0.24232					13	10	2	0	0	0	0.024487	1	9279	9279		24.203	0	1	94896			16034	8349	11388	11408	17345	17345					0.07025541456778228
FIYVEIAFF	9	Unmodified	_FIYVEIAFF_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF;MAN2B1|p.R114C|1|0.22|ENSG00000104774|chr19:12665448-12665448|G/A|missense_variant;ENST00000600281.1_1_19:12776145-12777515:-|nuORF;ENST00000486847.2_1_19:12774617-12777525:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1;ENST00000486847.2_1_19:12774617-12777525:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.7625732421875	2	574.804968	1147.59538	-0.61226	-0.00035193	-4.4685	-0.0025685	-5.0807	-0.0029204	574.8026874681879	72.73	1.0853	72.532	71.992	73.077	-0.19811					37	25	2	0	0	0	0.024466	1	8477	8477		33.516	1.5607	1	154120			16035	2598;15354	11389	11409	17346	17346					0.02748985768221246
FIYVEIAFF	9	Unmodified	_FIYVEIAFF_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF;MAN2B1|p.R114C|1|0.22|ENSG00000104774|chr19:12665448-12665448|G/A|missense_variant;ENST00000600281.1_1_19:12776145-12777515:-|nuORF;ENST00000486847.2_1_19:12774617-12777525:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1;ENST00000486847.2_1_19:12774617-12777525:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	574.804968	1147.59538	0.30767	0.00017685	-5.4332	-0.003123	-5.1255	-0.0029462	575.3028163695316	73.101	0.94577	72.821	72.467	73.412	-0.27934	0.12211	-0.00063829	NaN	33.516	50	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517850			16036	2598;15354	11389	11409							0.02748985768221246
FKAAIRVK	8	Unmodified	_FKAAIRVK_					0	0	0			REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF;REV__ENST00000461878.5_1_7:116502665-116528309:+|nuORF	REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2637939453125	2	466.805637	931.596721	-0.29648	-0.0001384	1.2976	0.00060573	1.0011	0.00046733	466.80612254821926	30.6	0.29673	30.45	30.259	30.556	-0.14952					14	6	3	0	0	0	0.027866	1	1944	1944		12.207	4.5166	1	111400	+		16037	19246;32888	11390	11410	17347	17347					0.12818664647647893
FKAKKKEL	8	Unmodified	_FKAKKKEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7557678222656	2	496.318577	990.622602	0.58194	0.00028883	-0.80691	-0.00040048	-0.22496	-0.00011165	496.31813583252557	67.649	0.62044	67.649	67.367	67.987	0					21	15	2	0	0	0	0.027866	1	8064	8064		31.955	16.313	1	206450			16038	1094	11391	11411	17348	17348					0.12691514099276446
FKAKKKEL	8	Unmodified	_FKAKKKEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.318577	990.622602	0.1305	6.4768E-05	-0.022809	-1.132E-05	0.10769	5.3447E-05	496.31848222630094	68.016	0.5453	67.728	67.511	68.057	-0.28834	0.037233	0.00037523	NaN	31.955	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182720			16039	1094	11391	11411							0.12691514099276446
FKAKKKEL	8	Unmodified	_FKAKKKEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.318577	990.622602	0.38358	0.00019038	-0.33196	-0.00016476	0.051625	2.5622E-05	496.3183465557725	67.759	0.76848	67.778	67.508	68.276	0.018913	0.087191	6.8363E-05	NaN	31.955	29	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137250			16040	1094	11391	11411							0.12691514099276446
FKAKKKEL	8	Unmodified	_FKAKKKEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.318577	990.622602	0.7211	0.0003579	-0.54023	-0.00026812	0.18088	8.9772E-05	496.3181550420231	67.944	0.36523	67.689	67.497	67.862	-0.25516	-0.0016255	-0.00013837	NaN	31.955	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138810			16041	1094	11391	11411							0.12691514099276446
FKAKKKEL	8	Unmodified	_FKAKKKEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.318577	990.622602	0.15813	7.8483E-05	-0.52554	-0.00026083	-0.36741	-0.00018235	496.31816723329575	67.875	0.44922	67.641	67.387	67.837	-0.23376	-0.049945	-0.00012379	NaN	31.955	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127310			16042	1094	11391	11411							0.12691514099276446
FKAKKKEL	8	Unmodified	_FKAKKKEL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.318577	990.622602	-0.10488	-5.2053E-05	0.17623	8.7465E-05	0.071349	3.5412E-05	496.318601016126	67.898	0.28052	67.66	67.466	67.747	-0.23814	-0.030755	0.00057281	NaN	31.955	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137660			16043	1094	11391	11411							0.12691514099276446
FKATYRAGI	9	Unmodified	_FKATYRAGI_					0	0	0		ENSG00000174521|ENST00000311308|TTC9B;ENST00000593586.1_1_19:40723001-40723700:-|nuORF	ENSG00000174521|ENST00000311308|TTC9B	ENSG00000174521|ENST00000311308|TTC9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7922973632812	2	513.790184	1025.56581	-0.8553	-0.00043944	1.7088	0.00087795	0.85348	0.00043851	513.7907870235442	21.793	0.80308	21.793	21.441	22.245	0					43	16	4	0	0	0	0.80003	1	691	691		39.253	2.0937	1	2030300			16044	8480	11392	11412	17349	17349					0.05405466542742943
FKAVTETTK	9	Unmodified	_FKAVTETTK_					0	0	0		nc|ENSG00000142512|Q96LC7-8|SIGLEC10;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10;nc|ENSG00000142512|Q96LC7-5|SIGLEC10;ENST00000524527.1_1_19:51920201-51920835:-|nuORF	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2518920898438	2	512.787307	1023.56006	-0.50945	-0.00026124	4.0634	0.0020837	3.5539	0.0018224	512.789314425104	20.819	0.47324	20.714	20.522	20.995	-0.10477					16	9	2	0	0	0	0.024466	1	584	584		31.53	0	1	142310			16045	5565	11393	11413	17350	17350					0.0492232324043016
FKCCGVVYFTD	11	Unmodified	_FKCCGVVYFTD_					0	0	0		nc|ENSG00000106025|O95859-2|TSPAN12;ENSG00000106025|ENST00000222747|TSPAN12	nc|ENSG00000106025|O95859-2|TSPAN12	nc|ENSG00000106025|O95859-2|TSPAN12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.86077880859375	3	427.859598	1280.55697	-0.42817	-0.00018319	2.9744	0.0012726	2.5462	0.0010894	427.86082168314306	21.213	0.96297	21.123	20.72	21.683	-0.090094					52	19	4	0	0	0	1.0327	1	628	628		29.551	0.38069	1	323060			16046	2750	11394	11414	17351	17351					-0.0720901120025701
FKCCGVVYFTD	11	Unmodified	_FKCCGVVYFTD_					0	0	0		nc|ENSG00000106025|O95859-2|TSPAN12;ENSG00000106025|ENST00000222747|TSPAN12	nc|ENSG00000106025|O95859-2|TSPAN12	nc|ENSG00000106025|O95859-2|TSPAN12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	427.859598	1280.55697	0.59851	0.00025608	1.9737	0.00084446	2.5722	0.0011005	427.8604149430157	21.021	0.54086	21.09	20.809	21.35	0.06946	-0.0012848	-0.0014375	NaN	29.551	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28594			16047	2750	11394	11414							-0.0720901120025701
FKDAERTKL	9	Unmodified	_FKDAERTKL_					0	0	0		nc|ENSG00000057593|P08709|F7;ENSG00000057593|ENST00000346342|F7	nc|ENSG00000057593|P08709|F7	nc|ENSG00000057593|P08709|F7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.830078125	2	554.31148	1106.60841	0.13611	7.545E-05	-1.0096	-0.00055963	-0.87347	-0.00048418	554.3105960911455	91.25	0.88217	91.111	90.823	91.706	-0.13942					37	20	3	0	0	0	0.024484	1	11146	11146		30.318	0	1	288070			16048	18051	11395	11415	17352	17352					0.059368168803075605
FKEHISNKL	9	Unmodified	_FKEHISNKL_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3117065429688	2	558.314023	1114.61349	-0.95498	-0.00053318	-3.0521	-0.001704	-4.0071	-0.0022372	558.3122770398202	22.314	0.85343	22.388	22.078	22.931	0.073954					47	17	4	0	0	0	0.16468	1	730	730		96.19	5.8206	1	1287800	+		16049	24424	11396	11416	17353	17353					0.06077120742952502
FKEHLHLL	8	Unmodified	_FKEHLHLL_					0	0	0			REV__nc|ENSG00000146453|Q8NA58|PNLDC1	REV__nc|ENSG00000146453|Q8NA58|PNLDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.79833984375	2	518.800552	1035.58655	-0.91098	-0.00047262	-3.5503	-0.0018419	-4.4612	-0.0023145	518.7986309815509	30.612	1.1942	30.686	30.378	31.572	0.074314					52	28	3	0	0	0	0.74904	1	1916	1916		63.306	3.188	1	4010300	+		16050	24492	11397	11417	17354	17354					0.07018056922424876
FKEPVLPNN	9	Unmodified	_FKEPVLPNN_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7664794921875	2	529.287474	1056.5604	-0.47416	-0.00025097	0.16791	8.8871E-05	-0.30625	-0.0001621	529.2873758527019	65.526	0.78007	65.275	64.905	65.685	-0.25112					31	18	3	0	0	0	0.024495	1	7531	7531		19.997	0	1	743140			16051	1314	11398	11418	17355	17355					0.034377429602727716
FKERIADI	8	Unmodified	_FKERIADI_					0	0	0		ENSG00000152954|ENST00000378491|NRSN1	ENSG00000152954|ENST00000378491|NRSN1	ENSG00000152954|ENST00000378491|NRSN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.73736572265625	2	496.282192	990.549831	-1.0369	-0.0005146	1.7099	0.00084857	0.67293	0.00033396	496.28338178296923	33.382	0.44084	33.217	33.038	33.479	-0.16565					20	10	3	0	0	0	0.027866	1	2394	2394		44.117	3.5442	1	71362			16052	6310	11399	11419	17356	17356					0.05417760305840602
FKFAAAIAII	10	Unmodified	_FKFAAAIAII_					0	0	0		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.789794921875	2	532.828778	1063.643	-1.4258	-0.00075972	-2.8264	-0.001506	-4.2522	-0.0022657	532.8271634547191	64.829	0.41797	64.566	64.304	64.722	-0.2626					15	10	2	0	0	0	0.03519	1	7596	7596		38.806	17.859	1	103440			16053	3157	11400	11420	17357	17357					0.11372684759066942
FKFEKYKKS	9	Unmodified	_FKFEKYKKS_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.2951049804688	2	602.839874	1203.66519	0.29729	0.00017922	-3.6276	-0.0021869	-3.3303	-0.0020076	602.8375236567515	68.492	0.39828	68.261	68	68.398	-0.23048					17	9	3	0	0	0	0.024457	1	7897	7897		45.952	8.4438	1	134100	+		16054	20800	11401	11421	17358	17358					0.07150864436835036
FKFHKLKHYIR	11	Unmodified	_FKFHKLKHYIR_					0	0	0			REV__ENSG00000149231|ENST00000646818|CCDC82	REV__ENSG00000149231|ENST00000646818|CCDC82	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.756103515625	3	506.301501	1515.88267	-0.63444	-0.00032122	0.72959	0.00036939	0.095151	4.8175E-05	506.30115887200594	34.699	0.38964	34.749	34.557	34.947	0.050255					10	9	2	0	0	0	0.024856	1	2578	2578		13.508	1.0751	1	83386	+		16055	24661	11402	11422	17359	17359					0.14536679430125332
FKGAFKDEV	9	Unmodified	_FKGAFKDEV_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7918701171875	2	520.7742	1039.53385	-0.45159	-0.00023518	-2.3005	-0.001198	-2.7521	-0.0014332	520.7713943892637	53.901	0.17511	53.901	53.835	54.01	0					6	4	2	0	0	0	0.024477	1	5873	5873		35.618	0	1	87864			16056	3368	11403	11423	17360	17360					0.01566054068939593
FKGAVLFLL	9	Unmodified	_FKGAVLFLL_					0	0	0			REV__ENST00000539098.5_1_12:133618053-133624816:+|nuORF	REV__ENST00000539098.5_1_12:133618053-133624816:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7605285644531	2	504.318046	1006.62154	-1.1198	-0.00056475	-3.2917	-0.0016601	-4.4116	-0.0022248	504.31633697380045	65.028	0.44585	64.826	64.617	65.063	-0.20254					25	10	3	0	0	0	0.024497	1	7451	7451		28.254	11.781	1	456740	+		16057	34728	11404	11424	17361	17361					0.11849299730374696
FKGKCPKVQRA	11	Unmodified	_FKGKCPKVQRA_					0	0	0		ENST00000572440.1_1_17:44055640-44055811:+|nuORF;ENST00000576518.1_1_17:44055640-44101534:+|nuORF	ENST00000572440.1_1_17:44055640-44055811:+|nuORF	ENST00000572440.1_1_17:44055640-44055811:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	631.3615112304688	2	631.363524	1260.7125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.052	1	66.77	66.27	67.27	-0.28148								0	0	0	1.0833	1	7959	7959		37.812	0.30334	1				16058	17058	11405	11425	17362	17362					0.09256820436189628
FKGLVLIAF	9	Unmodified	_FKGLVLIAF_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7608337402344	2	504.318046	1006.62154	-0.47452	-0.00023931	-3.753	-0.0018927	-4.2275	-0.002132	504.31617443092625	65.061	0.52604	64.826	64.607	65.133	-0.2345					34	12	4	0	0	0	0.024466	1	7455	7455		33.516	13.519	1	381090		+	16059	508	11406	11426	17363	17363					0.11849299730374696
FKGLVLIAF	9	Unmodified	_FKGLVLIAF_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.318046	1006.62154	-1.0146	-0.00051169	-3.1123	-0.0015696	-4.127	-0.0020813	504.3165122179581	64.8	0.56059	64.8	64.422	64.983	0	-0.020789	0.00027508	NaN	33.516	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538680		+	16060	508	11406	11426							0.11849299730374696
FKGLVLIAF	9	Unmodified	_FKGLVLIAF_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.318046	1006.62154	-1.5459	-0.00077963	-2.4611	-0.0012412	-4.007	-0.0020208	504.31676336475493	65.121	0.53262	64.858	64.532	65.065	-0.2626	0.037865	0.00093191	NaN	33.516	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466410		+	16061	508	11406	11426							0.11849299730374696
FKGLVLIAF	9	Unmodified	_FKGLVLIAF_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.318046	1006.62154	-0.58099	-0.000293	-3.4866	-0.0017584	-4.0676	-0.0020514	504.31635119023497	64.796	0.4857	64.833	64.595	65.081	0.037376	0.012437	-0.00010245	NaN	33.516	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433970		+	16062	508	11406	11426							0.11849299730374696
FKGLVLIAF	9	Unmodified	_FKGLVLIAF_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.318046	1006.62154	-0.74854	-0.0003775	-4.0233	-0.002029	-4.7719	-0.0024065	504.3158485591915	65.036	0.36029	64.78	64.621	64.981	-0.25562	-0.04051	-0.00064376	NaN	33.516	23	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416700		+	16063	508	11406	11426							0.11849299730374696
FKHAVNGF	8	Unmodified	_FKHAVNGF_					0	0	0		nc|ENSG00000144048|O75319-2|DUSP11;ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2427062988281	2	460.24287	918.471186	3.6501	0.0016799	-4.3626	-0.0020078	-0.71246	-0.00032791	460.2407406788563	17.077	0.59181	17.077	16.907	17.498	0					27	12	4	0	0	0	1.0133	1	119	119		35.201	1.6851	1	623770			16064	5717	11407	11427	17364	17364					0.008689527914270911
FKHDGKFL	8	Unmodified	_FKHDGKFL_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.73736572265625	2	496.271627	990.528701	-1.043	-0.00051763	-0.20547	-0.00010197	-1.2485	-0.0006196	496.27213711120066	33.234	0.63395	33.068	32.998	33.632	-0.16565					19	15	2	0	0	0	0.027866	1	2394	2394		44.117	0	1	115140	+		16065	21318	11408	11428	17365	17365					0.03305794997004341
FKHKLPLG	8	Unmodified	_FKHKLPLG_					0	0	0			REV__FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	REV__FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2958068847656	2	470.292362	938.570172	4.0872	0.0019222	2.9832	0.001403	7.0704	0.0033251	470.29387853859765	18.737	1.81	18.8	18.55	20.36	0.063307					78	36	4	0	0	0	1.0574	1	323	323		20.482	4.8456	1	3904300	+		16066	21638	11409	11429	17366	17366					0.09842975756339456
FKIKIRVK	8	Unmodified	_FKIKIRVK_					0	0	0		ENST00000419690.5_1_X:24167846-24170939:+|nuORF	ENST00000419690.5_1_X:24167846-24170939:+|nuORF	ENST00000419690.5_1_X:24167846-24170939:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2672119140625	2	516.358037	1030.70152	-0.35586	-0.00018375	-0.40159	-0.00020736	-0.75744	-0.00039111	516.3578155571975	28.201	0.63136	28.049	27.729	28.36	-0.15195					25	15	2	0	0	0	0.027866	1	1588	1588		0.90815	0	1	86711			16067	13958	11410	11430	17367	17367					0.18739786124206148
FKIMPKASPY	10	Unmodified	_FKIMPKASPY_					0	0	0			REV__GOLIM4|p.P574Qfs*24|1|0.52|ENSG00000173905|chr3:168024998-168024998|G/-|frameshift_variant	REV__GOLIM4|p.P574Qfs*24|1|0.52|ENSG00000173905|chr3:168024998-168024998|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	591.3245849609375	2	591.323002	1180.63145	-0.57235	-0.00033844	3.4108	0.0020169	2.8384	0.0016784	591.324892933812	47.393	1.7473	47.24	46.899	48.646	-0.15301					101	50	4	0	0	0	0.91678	1	4727	4727		52.937	6.9645	1	3373200	+		16068	26819	11411	11431	17368	17368					0.048361196734276746
FKKEFITYN	9	Unmodified	_FKKEFITYN_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	594.768798828125	2	595.316232	1188.61791	-0.95753	-0.00057003	0.13199	7.8577E-05	-0.82554	-0.00049146	595.316199893162	49.391	0.61627	49.238	48.864	49.481	-0.15277					24	16	2	0	0	0	0.024323	1	5074	5074		44.117	1.7207	1	147040	+		16069	21220	11412	11432	17369	17369					0.031145851658720858
FKKELREPQFR	11	Unmodified	_FKKELREPQFR_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.34552001953125	3	493.280654	1476.82013	-0.1561	-7.6999E-05	-4.0575	-0.0020015	-4.2136	-0.0020785	493.2788613112648	19.587	0.34498	19.426	19.282	19.627	-0.16079					9	6	2	0	0	0	0.024856	1	439	439		9.2118	3.2108	1	17532			16070	3299	11413	11433	17370	17370					0.10079488571250295
FKKIDWKF	8	Unmodified	_FKKIDWKF_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.3160400390625	2	556.318577	1110.6226	-0.53913	-0.00029993	-3.3683	-0.0018738	-3.9074	-0.0021738	556.3166053151966	22.763	0.54985	22.577	22.281	22.831	-0.18539					27	11	3	0	0	0	0.71833	1	829	829		65.803	1.5959	1	667760	+		16071	25129	11414	11434	17371	17371					0.07171514099286469
FKKIQIVLY	9	Unmodified	_FKKIQIVLY_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5;REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.787353515625	2	576.362985	1150.71142	-0.45695	-0.00026337	-3.9666	-0.0022862	-4.4236	-0.0025496	576.3599844459208	68.884	0.25204	68.899	68.722	68.974	0.015121					8	6	2	0	0	0	0.024541	1	8205	8205		18.324	0	1	80118	+		16072	21934;34784	11415	11435	17372	17372					0.14208929338951748
FKKNLLLSGS	10	Unmodified	_FKKNLLLSGS_					0	0	0			REV__ENSG00000159708|ENST00000329956|LRRC36	REV__ENSG00000159708|ENST00000329956|LRRC36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8302612304688	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0781	1	11180	11180		35.618	5.1146	1	4896800	+		16073	25270	11416	11436	17373	17373					0.10094577919812764
FKKNLMAI	8	Unmodified	_FKKNLMAI_					0	0	0		ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.27783203125	2	482.786056	963.557558	-0.25669	-0.00012393	3.8751	0.0018708	3.6184	0.0017469	482.78775709683697	20.04	0.49188	20.04	19.88	20.372	0					22	9	3	0	0	0	0.027866	1	474	474		29.842	0	1	182720			16074	8201	11417	11437	17374	17374					0.07432196301772365
FKKQAALSL	9	Unmodified	_FKKQAALSL_					0	0	0			REV__ENST00000389532.8_1_9:138702463-138702589:-|nuORF	REV__ENST00000389532.8_1_9:138702463-138702589:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.3081970214844	2	503.30821	1004.60187	-0.045695	-2.2999E-05	0.0022198	1.1173E-06	-0.043475	-2.1881E-05	503.3079274048635	42.721	1.2179	42.609	42.281	43.499	-0.11253					84	32	4	0	0	0	0.31037	2	3876	3866;3876		74.255	2.3776	1	3549500	+		16075	31572	11418	11438	17375;17376	17376					0.09974923719619255
FKKQAALSL	9	Unmodified	_FKKQAALSL_					0	0	0			REV__ENST00000389532.8_1_9:138702463-138702589:-|nuORF	REV__ENST00000389532.8_1_9:138702463-138702589:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.3082580566406	2	503.30821	1004.60187	-0.40604	-0.00020436	0.36885	0.00018564	-0.037192	-1.8719E-05	503.30813413000106	42.877	1.4193	42.639	41.932	43.351	-0.23737					89	34	4	0	0	0	0.50848	2	3893	3893;3907		58.782	2.0609	1	3928800	+		16076	31572	11418	11438	17377;17378	17377					0.09974923719619255
FKKQAALSL	9	Unmodified	_FKKQAALSL_					0	0	0			REV__ENST00000389532.8_1_9:138702463-138702589:-|nuORF	REV__ENST00000389532.8_1_9:138702463-138702589:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.30841064453125	2	503.30821	1004.60187	-0.85002	-0.00042782	1.0344	0.00052063	0.1844	9.2808E-05	503.30851835106165	42.913	1.2732	42.687	42.105	43.379	-0.22597					91	33	4	0	0	0	0.62163	1	3913	3913		51.335	0	1	4051800	+		16077	31572	11418	11438	17379	17379					0.09974923719619255
FKKSYITE	8	Unmodified	_FKKSYITE_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.31024169921875	2	508.276575	1014.5386	-0.15178	-7.7144E-05	-2.69	-0.0013672	-2.8417	-0.0014444	508.27501208193667	31.785	1.1019	31.6	31.283	32.385	-0.18503					59	25	4	0	0	0	0.027866	1	2146	2146		30.504	0	1	957830	+		16078	23406	11419	11439	17380	17380					0.03190938211696448
FKKTTANL	8	Unmodified	_FKKTTANL_					0	0	0		ENSG00000091428|ENST00000397081|RAPGEF4;nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	ENSG00000091428|ENST00000397081|RAPGEF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7823791503906	2	461.77146	921.528367	-0.23788	-0.00010985	-2.5344	-0.0011703	-2.7723	-0.0012802	461.77025773692407	27.545	0.33189	27.626	27.463	27.795	0.081293					10	8	2	0	0	0	0.027866	1	1454	1454		29.15	0	1	84895			16079	1960	11420	11440	17381	17381					0.064463752771303
FKKTWFSWSRW	11	Unmodified	_FKKTWFSWSRW_					0	0	0		ENST00000307149.9_1_16:23400057-23400153:-|nuORF	ENST00000307149.9_1_16:23400057-23400153:-|nuORF	ENST00000307149.9_1_16:23400057-23400153:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8206176757812	3	520.269978	1557.7881	-1.2137	-0.00063147	0.88122	0.00045847	-0.33252	-0.000173	520.2709883363474	80.767	0.47372	80.791	80.573	81.046	0.023903					19	11	3	0	0	0	0.024879	1	10000	10000		12.957	9.3384	1	283960			16080	12008	11421	11441	17382	17382					0.031521208881258644
FKKYNSLL	8	Unmodified	_FKKYNSLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2|p.D503Afs*13|1|0.06|ENSG00000054654|chr14:63978952-63978953|-/CTATGGCTAAAATTATAGTTAA|frameshift_variant;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2802429199219	2	506.794935	1011.57532	-0.32758	-0.00016601	-1.2582	-0.00063764	-1.5858	-0.00080366	506.79303190500434	49.861	0.78788	49.936	49.617	50.405	0.075336					29	22	2	0	0	0	0.027866	1	5111	5111		29.15	0	1	186460			16081	1175;38049	11422	11442	17383	17383					0.06999234828288081
FKLEINEKN	9	Unmodified	_FKLEINEKN_					0	0	0		nc|ENSG00000102287|P78334-2|GABRE;ENSG00000102287|ENST00000370328|GABRE	nc|ENSG00000102287|P78334-2|GABRE	nc|ENSG00000102287|P78334-2|GABRE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.30908203125	2	567.811313	1133.60807	0.3344	0.00018988	-1.4225	-0.00080772	-1.0881	-0.00061784	567.8103965361772	69.529	1.6331	69.236	68.405	70.038	-0.29292					131	41	6	0	0	0	0.17845	1	8407	8407		93.143	5.3889	1	12873000			16082	2396	11423	11443	17384	17384					0.04661397160475644
FKLEINEKN	9	Unmodified	_FKLEINEKN_					0	0	0		nc|ENSG00000102287|P78334-2|GABRE;ENSG00000102287|ENST00000370328|GABRE	nc|ENSG00000102287|P78334-2|GABRE	nc|ENSG00000102287|P78334-2|GABRE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3088989257812	2	567.811313	1133.60807	-1.1634	-0.00066059	0.034612	1.9653E-05	-1.1288	-0.00064094	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.12914	1	8336	8336		104.06	10.861	1	13770000			16083	2396	11423	11443	17385	17385					0.04661397160475644
FKLHDKDP	8	Unmodified	_FKLHDKDP_					0	0	0		nc|ENSG00000278535|Q6UWP2-2|DHRS11;ENSG00000278535|ENST00000618403|DHRS11	nc|ENSG00000278535|Q6UWP2-2|DHRS11	nc|ENSG00000278535|Q6UWP2-2|DHRS11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.2749328613281	2	500.266542	998.51853	0.94807	0.00047429	2.4775	0.0012394	3.4256	0.0017137	500.76944138517007	20.309	0.19054	20.113	19.947	20.138	-0.19577					5	3	2	0	0	0	0.027866	1	504	504		64.207	18.255	1	9445.7			16084	11065	11424	11444	17386	17386					0.019211872717505685
FKLIPAMFVSL	11	Unmodified	_FKLIPAMFVSL_					0	0	0			REV__nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	REV__nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.36865234375	2	633.369952	1264.72535	0.31837	0.00020164	-1.7015	-0.0010777	-1.3832	-0.00087606	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	1.0017	1	11944	11944		36.447	4.9169	1	3419700	+		16085	20654	11425	11445	17387	17387					0.10357838775735217
FKLKHCGPGW	10	Unmodified	_FKLKHCGPGW_					0	0	0		PPIB|p.Y133C|1|0.23|ENSG00000166794|chr15:64156855-64156855|T/C|missense_variant	PPIB|p.Y133C|1|0.23|ENSG00000166794|chr15:64156855-64156855|T/C|missense_variant	PPIB|p.Y133C|1|0.23|ENSG00000166794|chr15:64156855-64156855|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.7384643554688	2	586.805311	1171.59607	-0.89899	-0.00052753	2.9349	0.0017222	2.0359	0.0011947	586.8070569103437	29.118	0.21745	28.968	28.826	29.044	-0.14952					6	4	2	0	0	0	0.03519	1	1741	1741		27.882	11.409	1	34665			16086	18985	11426	11446	17388	17388					0.017135019362967796
FKLKQKTI	8	Unmodified	_FKLKQKTI_					0	0	0		ENST00000371335.4_1_X:119572840-119572900:-|nuORF	ENST00000371335.4_1_X:119572840-119572900:-|nuORF	ENST00000371335.4_1_X:119572840-119572900:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.81036376953125	2	503.326402	1004.63825	0.31598	0.00015904	-1.2334	-0.00062082	-0.91745	-0.00046178	503.3254324699011	69.404	1.1576	69.111	68.556	69.714	-0.29292					75	29	4	0	0	0	0.027866	1	8346	8346		31.955	18.996	1	2010100			16087	12990	11427	11447	17389	17389					0.13611800616320124
FKLKRGGW	8	Unmodified	_FKLKRGGW_					0	0	0		ENST00000379716.5_1_X:19650045-19689070:-|nuORF	ENST00000379716.5_1_X:19650045-19689070:-|nuORF	ENST00000379716.5_1_X:19650045-19689070:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.29547119140625	2	496.295436	990.57632	-0.20472	-0.0001016	-0.10844	-5.3819E-05	-0.31316	-0.00015542	496.2952352590917	66.64	0.66745	66.67	66.491	67.159	0.030106					45	15	4	0	0	0	1.0574	1	7853	7853		26.796	0	1	1771200			16088	13282	11428	11448	17390	17390					0.08065493987851369
FKLKVNESH	9	Unmodified	_FKLKVNESH_					0	0	0			REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	REV__ENST00000470137.5_1_13:44398084-44434086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2924194335938	2	551.306198	1100.59784	0.21874	0.00012059	0.16653	9.1808E-05	0.38527	0.0002124	551.3057576950941	40.595	0.64769	40.478	40.012	40.66	-0.11642					26	17	3	0	0	0	0.024319	1	3580	3580		56.721	5.3856	1	650500	+		16089	24795	11429	11449	17391	17391					0.051568342258860866
FKLLTQLPI	9	Unmodified	_FKLLTQLPI_					0	0	0			REV__MERTK|p.E960Rfs*39|1|0.13|ENSG00000153208|chr2:112028738-112028738|G/-|frameshift_variant	REV__MERTK|p.E960Rfs*39|1|0.13|ENSG00000153208|chr2:112028738-112028738|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2694702148438	2	536.841885	1071.66922	-1.0262	-0.00055089	-2.7358	-0.0014687	-3.762	-0.0020196	536.8402404041608	29.325	0.4249	29.328	29.166	29.591	0.0031357					28	10	4	0	0	0	0.024323	1	1810	1810		53.351	10.955	1	441500	+		16090	36372	11430	11450	17392	17392					0.13624953930570882
FKLRVEIDL	9	Unmodified	_FKLRVEIDL_					0	0	0			REV__ENST00000546953.1_1_6:170070523-170070838:-|nuORF	REV__ENST00000546953.1_1_6:170070523-170070838:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.8094482421875	2	566.839874	1131.66519	-0.48305	-0.00027381	-0.57295	-0.00032477	-1.056	-0.00059859	566.8391987938721	33.413	0.49204	33.469	33.279	33.771	0.056568					19	12	2	0	0	0	0.02435	1	2400	2400		42.396	0	1	50728	+		16091	34852	11431	11451	17393	17393					0.10462864436840391
FKLRVEIDL	9	Unmodified	_FKLRVEIDL_					0	0	0			REV__ENST00000546953.1_1_6:170070523-170070838:-|nuORF	REV__ENST00000546953.1_1_6:170070523-170070838:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.839874	1131.66519	-0.75529	-0.00042813	-0.3707	-0.00021012	-1.126	-0.00063825	566.8395656064982	33.483	0.32713	33.489	33.321	33.649	0.0066261	-0.057071	3.8524E-06	NaN	31.53	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67599	+		16092	34852	11431	11451							0.10462864436840391
FKPLAFRPG	9	Unmodified	_FKPLAFRPG_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.8005981445312	2	516.803094	1031.59164	-0.31247	-0.00016149	-4.0476	-0.0020918	-4.36	-0.0022533	516.8008438825279	36.688	1.0478	36.624	36.294	37.342	-0.063385					70	27	4	0	0	0	0.80658	1	2925	2925		38.806	2.3594	1	2853300	+		16093	21502	11432	11452	17394	17394					0.07710360785040393
FKPSDIEKI	9	Unmodified	_FKPSDIEKI_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8023071289062	2	538.802957	1075.59136	-0.76977	-0.00041475	-0.21512	-0.00011591	-0.98489	-0.00053066	538.8020676760879	87.877	0.48586	87.739	87.415	87.901	-0.13744					28	11	4	0	0	0	0.03849	1	10695	10695		134.81	5.1281	1	827220			16094	2208	11433	11453	17395	17395					0.05658896274530889
FKPSLLAQK	9	Unmodified	_FKPSLLAQK_					0	0	0		ENST00000461733.5_1_3:183898306-183901401:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.8182373046875	2	516.316035	1030.61752	-1.1059	-0.00057099	1.8821	0.00097177	0.77623	0.00040078	516.8191694207044	21.614	0.63123	21.401	21.118	21.749	-0.2128					30	12	4	0	0	0	0.33245	1	661	661		71.296	5.4925	1	506120			16095	6866	11434	11454	17396	17396					0.10343210236646883
FKQEVITTT	9	Unmodified	_FKQEVITTT_					0	0	0			REV__ENST00000354911.8_2_10:28822518-28879725:+|nuORF	REV__ENST00000354911.8_2_10:28822518-28879725:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7925415039062	2	533.792589	1065.57063	-1.3265	-0.00070805	1.2352	0.00065936	-0.09121	-4.8687E-05	533.7934082322464	44.539	1.3348	44.324	44.01	45.345	-0.21505					100	36	4	0	0	0	0.32811	1	4201	4201		71.877	5.4482	1	16249000	+		16096	30765	11435	11455	17397	17397					0.04046305894826219
FKQHFMDSR	9	Unmodified	_FKQHFMDSR_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	599.2435302734375	2	598.287482	1194.56041	-1.2638	-0.00075614	3.1821	0.0019038	1.9183	0.0011477	598.2893088724772	27.463	0.91364	27.295	27.013	27.927	-0.16816					55	21	3	0	0	0	0.024527	1	1485	1485		24.519	6.2571	1	808550			16097	4219	11436	11456	17398	17398					-0.029085803113730435
FKQLENLL	8	Unmodified	_FKQLENLL_					0	0	0			REV__ENST00000602599.1_1_2:61194615-61239025:-|nuORF	REV__ENST00000602599.1_1_2:61194615-61239025:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.81085205078125	2	502.792392	1003.57023	0.55477	0.00027893	1.7091	0.00085934	2.2639	0.0011383	502.79344887837374	69.913	0.48779	69.62	69.348	69.836	-0.29292					15	11	2	0	0	0	0.027866	1	8370	8370		30.504	0	1	61356	+		16098	25510	11437	11457	17399	17399					0.06858930965665877
FKQQKMLPVG	10	Unmodified	_FKQQKMLPVG_					0	0	0			REV__RAD51C|p.T120Qfs*21|1|0.39|ENSG00000108384|chr17:58695140-58695140|A/-|frameshift_variant	REV__RAD51C|p.T120Qfs*21|1|0.39|ENSG00000108384|chr17:58695140-58695140|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.3357543945312	2	588.333901	1174.65325	-0.43609	-0.00025657	3.0303	0.0017828	2.5942	0.0015263	588.3356239375158	106.88	0.67963	106.75	106.39	107.07	-0.1238					53	22	4	0	0	0	1.1329	1	13298	13298		27.882	7.8518	1	450350	+		16099	37424	11438	11458	17400	17400					0.07290924421999989
FKQQVDNV	8	Unmodified	_FKQQVDNV_					0	0	0		ENST00000587042.1_1_18:43591047-43652154:-|nuORF;nc|ENSG00000152229|Q9H939-2|PSTPIP2;ENSG00000152229|ENST00000409746|PSTPIP2	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2682189941406	2	489.256174	976.497795	-0.47509	-0.00023244	-1.865	-0.00091247	-2.3401	-0.0011449	489.2562759192792	43.922	0.43632	43.959	43.706	44.142	0.036903					30	11	3	0	0	0	0.027866	1	4063	4063		47.916	15.103	1	681290			16100	6258	11439	11459	17401	17401					0.00860596892096055
FKQQVDNV	8	Unmodified	_FKQQVDNV_					0	0	0		ENST00000587042.1_1_18:43591047-43652154:-|nuORF;nc|ENSG00000152229|Q9H939-2|PSTPIP2;ENSG00000152229|ENST00000409746|PSTPIP2	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.256174	976.497795	-1.1201	-0.00054802	1.5909	0.00077837	0.47082	0.00023035	489.2567539203716	44.07	1.3057	43.966	43.701	45.007	-0.10468	0.02229	0.0010119	NaN	47.916	45	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656730			16101	6258	11439	11459							0.00860596892096055
FKQQVDNV	8	Unmodified	_FKQQVDNV_					0	0	0		ENST00000587042.1_1_18:43591047-43652154:-|nuORF;nc|ENSG00000152229|Q9H939-2|PSTPIP2;ENSG00000152229|ENST00000409746|PSTPIP2	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.256174	976.497795	-0.89082	-0.00043584	1.3544	0.00066263	0.46355	0.00022679	489.2564431404067	44.223	0.55708	43.979	43.593	44.151	-0.2444	0.035419	0.00078043	NaN	47.916	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	634270			16102	6258	11439	11459							0.00860596892096055
FKQQVDNV	8	Unmodified	_FKQQVDNV_					0	0	0		ENST00000587042.1_1_18:43591047-43652154:-|nuORF;nc|ENSG00000152229|Q9H939-2|PSTPIP2;ENSG00000152229|ENST00000409746|PSTPIP2	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	ENST00000587042.1_1_18:43591047-43652154:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.256174	976.497795	-0.76608	-0.00037481	1.003	0.00049073	0.23693	0.00011592	489.25662316554366	44.241	0.46397	44.022	43.749	44.212	-0.21939	0.078832	0.00043663	NaN	47.916	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	696740			16103	6258	11439	11459							0.00860596892096055
FKRKKRIK	8	Unmodified	_FKRKKRIK_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.325927734375	2	552.379835	1102.74512	-1.024	-0.00056565	-1.8409	-0.0010169	-2.8649	-0.0015825	552.3790160068223	54.041	0.090157	53.905	53.837	53.928	-0.13617					4	2	2	0	0	0	0.027866	1	5704	5704		13.775	10.091	1	91089			16104	4475	11440	11460	17402	17402					0.1978539562135211
FKRKKRIK	8	Unmodified	_FKRKKRIK_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3262329101562	2	552.379835	1102.74512	-0.194	-0.00010716	3.298	0.0018217	3.104	0.0017146	552.382769649115	54.039	0.31516	53.841	53.709	54.025	-0.19739					11	9	2	0	0	0	0.027866	1	5697	5697		19.36	13.047	1	156020			16105	4475	11440	11460	17403	17403					0.1978539562135211
FKRPTRLA	8	Unmodified	_FKRPTRLA_					0	0	0			REV__ENSG00000136720|ENST00000259241|HS6ST1	REV__ENSG00000136720|ENST00000259241|HS6ST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.79498291015625	2	494.806168	987.597784	0.12826	6.3462E-05	2.3791	0.0011772	2.5073	0.0012406	494.8070621465856	59.405	0.12422	59.214	59.138	59.262	-0.19112					4	2	2	0	0	0	0.027866	1	6561	6561		26.796	12.132	1	53516	+		16106	23677	11441	11461	17404	17404					0.10348879016544288
FKSSCLLEV	9	Unmodified	_FKSSCLLEV_					0	0	0		ENST00000427391.1_1_X:130959344-130964414:-|nuORF	ENST00000427391.1_1_X:130959344-130964414:-|nuORF	ENST00000427391.1_1_X:130959344-130964414:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.7761840820312	2	513.270435	1024.52632	0.24222	0.00012432	-1.4961	-0.00076789	-1.2539	-0.00064357	513.2686480009005	102.85	1.2749	102.68	102.24	103.52	-0.17034					46	30	3	0	0	0	0.96322	1	12740	12740		27.882	1.0861	1	797890			16107	14108	11442	11462	17405	17405					0.015035784770361715
FKTFTGQF	8	Unmodified	_FKTFTGQF_					0	0	0			REV__ENSG00000157014|ENST00000448281|TATDN2	REV__ENSG00000157014|ENST00000448281|TATDN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2529296875	2	488.25036	974.486168	-0.59172	-0.00028891	2.6504	0.0012941	2.0587	0.0010052	488.25171356817253	29.212	3.9385	29.215	26.802	30.741	0.0031376					219	98	6	0	0	0	0.71063	1	1750	1750		66.429	3.123	1	6146300	+		16108	25106	11443	11463	17406	17406					-0.0020960013124522447
FKTWLETEAL	10	Unmodified	_FKTWLETEAL_					0	0	0		ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant;ENSG00000177932|ENST00000315475|ZNF354C	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.21893310546875	3	413.22029	1236.63904	-0.49301	-0.00020372	-2.3745	-0.00098118	-2.8675	-0.0011849	413.21930486742235	40.682	1.022	40.546	40.272	41.294	-0.13554					90	26	5	0	0	0	1.1237	1	3571	3571		29.551	0.38069	1	5383700			16109	8776	11444	11464	17407	17407					0.030185504747350933
FKVPKEMFT	9	Unmodified	_FKVPKEMFT_					0	0	0		ENSG00000197106|ENST00000331565|SLC6A17;ENST00000465159.1_1_1:110735209-110737464:+|nuORF	ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.8031005859375	2	563.801903	1125.58925	-0.43826	-0.00024709	0.079357	4.4742E-05	-0.3589	-0.00020235	563.8028848924656	107.21	0.68676	107.21	106.78	107.47	0.0018311					34	19	2	0	0	0	0.75397	1	13704	13704		42.396	1.3161	1	142310			16110	9953	11445	11465	17408	17408					0.03148144265060182
FKVPPYKQTF	10	Unmodified	_FKVPPYKQTF_					0	0	0			REV__nc|ENSG00000115652|Q8NBZ7|UXS1	REV__nc|ENSG00000115652|Q8NBZ7|UXS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	418.900390625	3	418.900891	1253.68084	2.7071	0.001134	-2.9935	-0.001254	-0.28641	-0.00011998	418.899541999989	18.841	0.4452	18.598	18.424	18.869	-0.24256					20	8	3	0	0	0	1.0639	1	330	330		37.508	9.4267	1	121450	+		16111	22221	11446	11466	17409	17409					0.06415150953876037
FKVPPYKQTF	10	Unmodified	_FKVPPYKQTF_					0	0	0			REV__nc|ENSG00000115652|Q8NBZ7|UXS1	REV__nc|ENSG00000115652|Q8NBZ7|UXS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	418.900891	1253.68084	0.59962	0.00025118	-0.78121	-0.00032725	-0.18159	-7.6067E-05	418.90053278836876	18.823	0.49378	18.667	18.445	18.939	-0.15637	0.032977	0.0011918	NaN	37.508	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115380	+		16112	22221	11446	11466							0.06415150953876037
FKVPPYKQTF	10	Unmodified	_FKVPPYKQTF_					0	0	0			REV__nc|ENSG00000115652|Q8NBZ7|UXS1	REV__nc|ENSG00000115652|Q8NBZ7|UXS1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	418.900891	1253.68084	2.7071	0.001134	-2.9935	-0.001254	-0.28641	-0.00011998	418.899541999989	18.841	0.4452	18.598	18.424	18.869	-0.24256	-0.036104	-0.0015885	NaN	37.508	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121450	+		16113	22221	11446	11466							0.06415150953876037
FKWILNTL	8	Unmodified	_FKWILNTL_					0	0	0		ENST00000602725.5_1_1:32384828-32384948:-|nuORF	ENST00000602725.5_1_1:32384828-32384948:-|nuORF	ENST00000602725.5_1_1:32384828-32384948:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7836303710938	2	517.805303	1033.59605	-0.25728	-0.00013322	1.7785	0.00092093	1.5212	0.0007877	517.8061713337574	42.383	0.91377	42.151	41.971	42.885	-0.23186					32	23	2	0	0	0	0.027866	1	3775	3775		21.96	4.4919	1	313900			16114	17534	11447	11467	17410	17410					0.08059825207942595
FKYFESLISSK	11	Unmodified	_FKYFESLISSK_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.78448486328125	3	450.243094	1347.70745	-0.31675	-0.00014261	0.65894	0.00029668	0.34219	0.00015407	450.57713460346247	28.631	0.72063	28.627	28.286	29.006	-0.0042					38	15	4	0	0	0	0.024792	1	1699	1699		34.087	2.0524	1	126690	+		16115	24894	11448	11468	17411	17411					0.0475079505456506
FKYRPRYYLYK	11	Unmodified	_FKYRPRYYLYK_					0	0	0		ENSG00000029559|ENST00000226284|IBSP	ENSG00000029559|ENST00000226284|IBSP	ENSG00000029559|ENST00000226284|IBSP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.76171875	3	532.961033	1595.86127	-0.78076	-0.00041611	3.1054	0.0016551	2.3246	0.0012389	532.9622905765635	28.593	0.58082	28.441	28.243	28.824	-0.15195					26	13	3	0	0	0	0.024886	1	1675	1675		10.104	3.783	1	300190			16116	1006	11449	11469	17412	17412					0.08717249610754152
FLAAWTLVL	9	Unmodified	_FLAAWTLVL_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.29736328125	2	517.307678	1032.6008	0.14144	7.3166E-05	3.7345	0.0019319	3.8759	0.0020051	517.3084778626377	102.54	0.3123	102.41	102.28	102.59	-0.12666					15	6	3	0	0	0	0.024466	1	12755	12755		33.516	1.5607	1	86437	+		16117	26733	11450	11470	17413	17413					0.08580709350690086
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.8157958984375	2	523.815867	1045.61718	0.99204	0.00051964	-2.7304	-0.0014302	-1.7384	-0.0009106	523.8142992178865	74.4	1.001	74.4	73.913	74.914	0					55	23	4	0	0	0	0.013293	3	9112	9091;9100;9112		176.09	23.616	1	2882600			16118	6234	11451	11471	17414;17415;17416	17416					0.0961979051680828
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.8154907226562	2	523.815867	1045.61718	0.12801	6.7056E-05	-1.6483	-0.0008634	-1.5203	-0.00079634	523.8147889068133	74.647	1.3578	74.388	74.071	75.429	-0.25887					54	33	3	0	0	0	0.020687	4	9095	9095;9105;9118;9132		148.99	35.575	1	3229000			16119	6234	11451	11471	17417;17418;17419;17420	17417					0.0961979051680828
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.8159790039062	2	523.815867	1045.61718	-0.53193	-0.00027863	-1.0887	-0.00057029	-1.6206	-0.00084892	523.8149029080422	74.444	1.2884	74.454	74.18	75.469	0.0096512					57	31	4	0	0	0	0.014918	3	9026	9026;9037;9049		162.25	25.451	1	2910800			16120	6234	11451	11471	17421;17422;17423	17421					0.0961979051680828
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MSMS	OPSCC_40_ClassI_Rep-1	4	523.81591796875	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.622	1	74.347	73.847	74.847	-0.27573								0	0	0	0.016409	1	8792	8792		136.27	22.857	1				16121	6234	11451	11471	17424	17424					0.0961979051680828
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MSMS	OPSCC_40_ClassI_Rep-1	4	523.816650390625	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.714	1	74.439	73.939	74.939	-0.27573								0	0	0	0.028164	1	8805	8805		118.74	17.142	1				16122	6234	11451	11471	17425	17425					0.0961979051680828
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8161010742188	2	523.815867	1045.61718	0.22439	0.00011754	0.36843	0.00019299	0.59282	0.00031053	523.8157024752948	74.603	1.4585	74.34	74.054	75.512	-0.26326					54	34	3	0	0	0	0.094442	1	8822	8822		112.41	22.041	1	1834900			16123	6234	11451	11471	17426	17426					0.0961979051680828
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.787109375	2	554.787307	1107.56006	-0.22371	-0.00012411	0.056417	3.1299E-05	-0.16729	-9.281E-05	554.7872441258721	82.257	1.6895	82.257	81.83	83.52	0					148	39	6	0	0	0	0.00014663	6	10246	10246;10256;10268;10281;10293;10307		166.78	97.155	1	9707600			16124	18712	11452	11472	17427;17428;17429;17430;17431;17432	17427					0.010583232404542287
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.7876586914062	2	554.787307	1107.56006	0.95949	0.00053231	-1.057	-0.00058642	-0.097531	-5.4109E-05	554.7865883209164	82.385	1.4384	82.275	81.842	83.28	-0.11006					105	33	5	0	0	0	5.3147E-08	6	10257	10224;10234;10245;10257;10269;10284		191.63	106.27	1	8937200			16125	18712	11452	11472	17433;17434;17435;17436;17437;17438	17436					0.010583232404542287
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.7874145507812	2	554.787307	1107.56006	-0.26605	-0.0001476	0.10237	5.6794E-05	-0.16368	-9.0808E-05	554.7872547805438	82.226	1.3997	82.252	81.899	83.299	0.025711					124	32	6	0	0	0	5.5182E-07	6	10204	10160;10170;10180;10192;10204;10218		176.41	99.637	1	9537400			16126	18712	11452	11472	17439;17440;17441;17442;17443;17444	17443					0.010583232404542287
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.787353515625	2	554.787307	1107.56006	0.42598	0.00023633	-0.25568	-0.00014185	0.1703	9.4478E-05	554.786920184406	82.37	1.5139	82.15	81.785	83.299	-0.22015					115	34	6	0	0	0	0.00014663	4	9919	9897;9907;9919;9933		166.78	92.808	1	4118000			16127	18712	11452	11472	17445;17446;17447;17448	17447					0.010583232404542287
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.7875366210938	2	554.787307	1107.56006	0.14168	7.8603E-05	-0.1226	-6.8014E-05	0.019086	1.0588E-05	554.7869911788795	82.404	2.3576	82.223	81.856	84.214	-0.18079					120	54	6	0	0	0	0.00050823	4	9922	9911;9922;9933;9945		152.47	93.689	1	4484300			16128	18712	11452	11472	17449;17450;17451;17452	17450					0.010583232404542287
FLADPSAFVAA	11	Unmodified	_FLADPSAFVAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.78759765625	2	554.787307	1107.56006	-0.82255	-0.00045634	0.94643	0.00052507	0.12388	6.8727E-05	554.7875324687576	82.335	1.512	82.195	81.827	83.339	-0.14014					97	34	4	0	0	0	0.00050823	4	9900	9889;9900;9912;9924		152.47	83.684	1	4269700			16129	18712	11452	11472	17453;17454;17455;17456	17454					0.010583232404542287
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.7819213867188	2	546.782222	1091.54989	-1.5263	-0.00083456	0.52934	0.00028944	-0.99697	-0.00054513	546.7825120320656	75.251	1.9236	75.251	74.835	76.759	0					155	49	5	0	0	0	2.1638E-06	9	9221	9209;9221;9233;9246;9258;9270;9283;9361;9372		296.37	143.33	1	28509000			16130	10357	11453	11473	17457;17458;17459;17460;17461;17462;17463;17464;17465	17458					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.7822265625	2	546.782222	1091.54989	-0.97342	-0.00053225	-0.059183	-3.236E-05	-1.0326	-0.00056461	546.7821816878239	75.525	2.4146	75.281	74.341	76.756	-0.24455					169	61	5	0	0	0	5.3733E-06	8	9249	9213;9225;9237;9249;9261;9276;9359;9372		278.48	125.44	1	29930000			16131	10357	11453	11473	17466;17467;17468;17469;17470;17471;17472;17473	17469					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.7816162109375	2	546.782222	1091.54989	-0.53855	-0.00029447	-0.38616	-0.00021115	-0.92472	-0.00050562	546.7820229683449	75.329	1.9222	75.339	74.934	76.856	0.010368					153	49	5	0	0	0	2.1638E-06	8	9167	9143;9155;9167;9179;9192;9205;9296;9309		296.37	144.31	1	30434000			16132	10357	11453	11473	17474;17475;17476;17477;17478;17479;17480;17481	17476					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7822875976562	2	546.782222	1091.54989	-0.46694	-0.00025532	-0.071285	-3.8977E-05	-0.53823	-0.00029429	546.7821548833791	75.597	2.1167	75.325	74.766	76.882	-0.27267					155	51	5	0	0	0	4.6112E-06	6	8923	8912;8923;8935;8947;8960;8973		278.48	130.36	1	14283000			16133	10357	11453	11473	17482;17483;17484;17485;17486;17487	17483					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.7821044921875	2	546.782222	1091.54989	-0.38362	-0.00020976	-0.086276	-4.7174E-05	-0.46989	-0.00025693	546.7821487628679	75.575	1.9506	75.316	74.906	76.856	-0.25866					147	47	5	0	0	0	2.6324E-09	6	8934	8924;8934;8946;8958;8971;8984		336.17	183.14	1	13634000			16134	10357	11453	11473	17488;17489;17490;17491;17492;17493	17489					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7818603515625	2	546.782222	1091.54989	-0.20453	-0.00011183	-0.31416	-0.00017178	-0.51868	-0.00028361	546.7820222216004	75.456	2.618	75.281	74.274	76.892	-0.17548					157	63	5	0	0	0	2.6324E-09	6	8912	8890;8900;8912;8924;8937;8952		336.17	183.14	1	13482000			16135	10357	11453	11473	17494;17495;17496;17497;17498;17499	17496					0.007777155151643456
FLAEDASTLI	10	Unmodified	_FLAEDASTLI_					0	0	0		ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2842407226562	2	540.284597	1078.55464	-0.0069122	-3.7346E-06	0.30785	0.00016632	0.30093	0.00016259	540.2845894536703	89.077	1.0941	89.055	88.78	89.874	-0.021645					59	25	4	0	0	0	0.85955	1	11221	11221		56.721	0	1	1389500			16136	1993	11454	11474	17500	17500					0.01850599657973362
FLAGALVNQL	10	Unmodified	_FLAGALVNQL_					0	0	0			REV__ENST00000467061.1_1_3:185212881-185213145:-|nuORF	REV__ENST00000467061.1_1_3:185212881-185213145:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.322998046875	2	523.305667	1044.59678	-1.0067	-0.00052681	0.71398	0.00037363	-0.29272	-0.00015318	523.305940710666	66.911	0.8201	66.911	66.63	67.45	0					56	19	4	0	0	0	0.03519	1	8028	8028		60.972	6.2496	1	4321100	+		16137	33060	11455	11475	17501	17501					0.0762661985700106
FLAGAYLDL	9	Unmodified	_FLAGAYLDL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2736511230469	2	491.765843	981.517133	-0.10037	-4.9359E-05	-3.8605	-0.0018985	-3.9609	-0.0019478	491.76391699300234	55.692	1.1609	55.536	55.16	56.321	-0.15601					56	31	3	0	0	0	0.024436	1	6203	6203		47.916	21.119	1	1052900	+		16138	24927	11456	11476	17502	17502					0.025635531830062064
FLAGAYLDL	9	Unmodified	_FLAGAYLDL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.765843	981.517133	0.83759	0.0004119	-4.6851	-0.002304	-3.8475	-0.0018921	491.7635090099536	55.555	1.4102	55.555	54.831	56.241	0	-0.0080525	-0.00086351	NaN	30.504	63	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1092600	+		16139	24927	11456	11476							0.025635531830062064
FLAGAYLDL	9	Unmodified	_FLAGAYLDL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.765843	981.517133	-1.3638	-0.00067067	-3.1685	-0.0015582	-4.5323	-0.0022288	491.7641158090868	55.71	1.0117	55.553	55.244	56.255	-0.15656	-0.010324	0.00062805	NaN	30.504	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	851280	+		16140	24927	11456	11476							0.025635531830062064
FLAGAYLDL	9	Unmodified	_FLAGAYLDL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.765843	981.517133	0.074159	3.6469E-05	-4.5046	-0.0022152	-4.4305	-0.0021788	491.7634878039808	55.785	0.82059	55.569	55.336	56.157	-0.21607	0.0059658	-0.00068607	NaN	30.504	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817040	+		16141	24927	11456	11476							0.025635531830062064
FLAILGGAKV	10	Unmodified	_FLAILGGAKV_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENSG00000170950|ENST00000304801|PGK2	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28668212890625	2	494.813128	987.611703	0.47646	0.00023576	-1.5008	-0.00074264	-1.0244	-0.00050688	494.81181393561553	67.551	0.5439	67.551	67.326	67.87	0					25	13	3	0	0	0	0.03519	1	8050	8050		38.806	12.01	1	732260			16142	2385	11457	11477	17503	17503					0.11740111724998314
FLAILGGAKV	10	Unmodified	_FLAILGGAKV_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENSG00000170950|ENST00000304801|PGK2	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2866516113281	2	494.813128	987.611703	0.11622	5.7505E-05	-1.0224	-0.0005059	-0.90619	-0.00044839	494.81218187934337	67.902	0.63142	67.614	67.347	67.978	-0.28834					29	15	3	0	0	0	0.03519	1	8069	8069		30.504	7.4612	1	627980			16143	2385	11457	11477	17504	17504					0.11740111724998314
FLAIYNVTV	9	Unmodified	_FLAIYNVTV_					0	0	0		ENSG00000186119|ENST00000333976|OR5D18	ENSG00000186119|ENST00000333976|OR5D18	ENSG00000186119|ENST00000333976|OR5D18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2916870117188	2	520.294768	1038.57498	-0.22012	-0.00011453	-3.5296	-0.0018364	-3.7497	-0.001951	520.2927910352751	72.974	0.63861	72.984	72.652	73.29	0.0096512					40	15	4	0	0	0	0.20967	1	8813	8813		87.754	13.499	1	1311100			16144	9517	11458	11478	17505	17505					0.05723815108422059
FLAIYNVTV	9	Unmodified	_FLAIYNVTV_					0	0	0		ENSG00000186119|ENST00000333976|OR5D18	ENSG00000186119|ENST00000333976|OR5D18	ENSG00000186119|ENST00000333976|OR5D18	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	520.294768	1038.57498	-0.15499	-8.0642E-05	-3.5692	-0.001857	-3.7242	-0.0019377	520.2927579586582	73.296	0.66441	73.025	72.719	73.384	-0.27126	0.032972	-0.00020888	NaN	87.754	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1655200			16145	9517	11458	11478							0.05723815108422059
FLAKKIIPS	9	Unmodified	_FLAKKIIPS_					0	0	0		ENSG00000172167|ENST00000305949|MTBP;nc|ENSG00000172167|Q96DY7-3|MTBP	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8293151855469	2	508.828778	1015.643	0.2097	0.0001067	0.082712	4.2086E-05	0.29241	0.00014879	508.82864289961014	71.843	1.0542	71.568	71.273	72.327	-0.27509					63	25	4	0	0	0	0.16468	1	8393	8393		96.19	10.831	1	2210600			16146	8249	11459	11479	17506	17506					0.1358068475908567
FLAKKIIPS	9	Unmodified	_FLAKKIIPS_					0	0	0		ENSG00000172167|ENST00000305949|MTBP;nc|ENSG00000172167|Q96DY7-3|MTBP	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.828857421875	2	508.828778	1015.643	0.071872	3.6571E-05	0.23629	0.00012023	0.30817	0.0001568	508.82875555153265	71.723	0.97474	71.461	71.241	72.216	-0.26199					59	23	4	0	0	0	0.26966	1	8406	8406		79.713	8.4169	1	2359500			16147	8249	11459	11479	17507	17507					0.1358068475908567
FLAKNINQP	9	Unmodified	_FLAKNINQP_					0	0	0		ENST00000502100.2_1_5:25190936-25302336:+|nuORF	ENST00000502100.2_1_5:25190936-25302336:+|nuORF	ENST00000502100.2_1_5:25190936-25302336:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3265991210938	2	522.795466	1043.57638	-0.64414	-0.00033675	1.758	0.00091906	1.1138	0.00058231	523.2988294834535	67.326	0.59588	67.326	67.01	67.606	0					19	14	2	0	0	0	0.024262	1	7993	7993		68.485	18.46	1	299880			16148	15658	11460	11480	17508	17508					0.056334491971938405
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2871398925781	2	492.287277	982.560001	0.40212	0.00019796	-0.60486	-0.00029777	-0.20274	-9.9808E-05	492.2868523778936	67.664	1.9122	67.664	67.326	69.238	0					125	49	4	0	0	0	0.031052	4	8077	8077;8089;8102;8114		154.34	87.011	1	4325500			16149	2265	11461	11481	17509;17510;17511;17512	17509					0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.287109375	2	492.287277	982.560001	0.15176	7.4712E-05	-0.27128	-0.00013355	-0.11952	-5.8838E-05	492.2870242992701	68.04	1.85	67.752	67.429	69.279	-0.28834					106	47	4	0	0	0	0.031052	4	8133	8096;8107;8121;8133		154.34	87.011	1	3747500			16150	2265	11461	11481	17513;17514;17515;17516	17516					0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2872009277344	2	492.287277	982.560001	0.16295	8.0217E-05	-0.28832	-0.00014194	-0.12537	-6.1719E-05	492.2870198447955	67.807	1.7123	67.826	67.425	69.137	0.018913					114	44	4	0	0	0	0.097274	3	8013	8013;8023;8036		136.44	69.108	1	3956400			16151	2265	11461	11481	17517;17518;17519	17517					0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.287277	982.560001	0.37519	0.0001847	0.05311	2.6145E-05	0.4283	0.00021085	492.287069630489	68.011	1.025	67.756	67.323	68.348	-0.25516	0.015178	0.00035129	NaN	154.34	61	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	868030			16152	2265	11461	11481							0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.287277	982.560001	0.33308	0.00016397	0.092946	4.5756E-05	0.42603	0.00020973	492.2871673913697	67.991	0.92805	67.757	67.471	68.399	-0.23376	0.016531	0.00039051	NaN	154.34	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824270			16153	2265	11461	11481							0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.287277	982.560001	0.24842	0.00012229	0.16499	8.1223E-05	0.41341	0.00020352	492.2871332234062	67.927	0.92718	67.689	67.422	68.349	-0.23814	-0.051727	0.00046145	NaN	154.34	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	903770			16154	2265	11461	11481							0.06802368031083006
FLALLRESN	9	Unmodified	_FLALLRESN_					0	0	0			REV__ENSG00000255151|ENST00000527482|GLYATL1B	REV__ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.765380859375	2	531.800749	1061.58694	-0.79699	-0.00042384	1.8702	0.00099458	1.0732	0.00057074	531.8010956728633	40.491	0.37658	40.514	40.387	40.764	0.023003					12	10	2	0	0	0	0.024323	1	3502	3502		53.351	8.8204	1	138150	+		16155	29062	11462	11482	17520	17520					0.05861431851622001
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.25579833984375	2	461.255643	920.496732	-0.020118	-9.2796E-06	0.21915	0.00010109	0.19904	9.1807E-05	461.2556102140301	69.391	0.82059	69.391	69.094	69.915	0					49	20	3	0	0	0	0.015925	2	8372	8359;8372		157.21	54.435	1	1397600			16156	6602	11463	11483	17521;17522	17522					0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2562561035156	2	461.255643	920.496732	0.66243	0.00030555	-0.33283	-0.00015352	0.3296	0.00015203	461.255322491715	69.7	0.79459	69.407	69.166	69.96	-0.29291					46	19	4	0	0	0	0.015925	1	8366	8366		157.21	66.432	1	1430400			16157	6602	11463	11483	17523	17523					0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.2559509277344	2	461.255643	920.496732	0.068618	3.1651E-05	0.12677	5.8475E-05	0.19539	9.0125E-05	461.2555993767605	69.454	0.82413	69.47	69.171	69.995	0.015121					51	20	4	0	0	0	0.047345	1	8294	8294		129.68	35.676	1	1354200			16158	6602	11463	11483	17524	17524					0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.2555847167969	2	461.255643	920.496732	-0.49461	-0.00022814	0.80916	0.00037323	0.31455	0.00014509	461.255897925675	69.743	0.9534	69.475	69.206	70.159	-0.26725					45	22	3	0	0	0	0.022311	2	8106	8094;8106		147.69	57.747	1	1088200			16159	6602	11463	11483	17525;17526	17526					0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	461.255643	920.496732	0.045071	2.0789E-05	0.23739	0.0001095	0.28246	0.00013029	461.25562580584887	69.672	0.74397	69.421	69.156	69.9	-0.25063	-0.00065167	4.0825E-05	NaN	157.21	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1119100			16160	6602	11463	11483							0.033303825232110285
FLANIGTSV	9	Unmodified	_FLANIGTSV_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	461.255643	920.496732	-0.032736	-1.51E-05	0.3539	0.00016324	0.32117	0.00014814	461.25566684260485	69.591	0.74334	69.369	69.145	69.888	-0.22245	-0.053581	0.00014831	NaN	157.21	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1080100			16161	6602	11463	11483							0.033303825232110285
FLAPHRLP	8	Unmodified	_FLAPHRLP_					0	0	0			REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF	REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7809143066406	2	475.782162	949.549771	0.21266	0.00010118	0.2393	0.00011385	0.45196	0.00021503	475.7809298596252	102.09	1.1661	101.96	101.07	102.23	-0.12666					38	28	2	0	0	0	1.0574	1	12683	12683		23.037	2.0898	1	126380	+		16162	25867	11464	11484	17527	17527					0.07297805096516186
FLAPVKTEV	9	Unmodified	_FLAPVKTEV_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2938232421875	2	502.294768	1002.57498	0.074906	3.7625E-05	-2.7263	-0.0013694	-2.6514	-0.0013318	502.29407969473186	53.819	1.2603	53.819	53.232	54.492	0					136	35	7	0	0	0	0.062622	2	5840	5830;5840		124.08	27.028	1	17778000			16163	8273	11465	11485	17528;17529	17529					0.07379815108436105
FLAPVKTEV	9	Unmodified	_FLAPVKTEV_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.29327392578125	2	502.294768	1002.57498	-0.32675	-0.00016413	-2.4383	-0.0012247	-2.7651	-0.0013889	502.2942801763174	53.916	1.4149	53.769	53.096	54.511	-0.14723					130	39	5	0	0	0	0.053401	4	5818	5818;5828;5840;5853		127.46	23.405	1	16142000			16164	8273	11465	11485	17530;17531;17532;17533	17530					0.07379815108436105
FLAPVKTEV	9	Unmodified	_FLAPVKTEV_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.29364013671875	2	502.294768	1002.57498	-0.2241	-0.00011256	-3.1355	-0.0015749	-3.3596	-0.0016875	502.29423860469007	53.684	1.1887	53.78	53.3	54.489	0.095669					98	33	5	0	0	0	0.072054	5	5731	5731;5741;5754;5767;5779		120.62	24.806	1	17310000			16165	8273	11465	11485	17534;17535;17536;17537;17538	17534					0.07379815108436105
FLAPVKTEV	9	Unmodified	_FLAPVKTEV_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.29443359375	2	502.294768	1002.57498	-1.0213	-0.00051299	0.60293	0.00030285	-0.41836	-0.00021014	502.2950047921365	53.824	0.8616	53.688	53.393	54.255	-0.13617					82	26	4	0	0	0	0.17845	1	5659	5659		93.143	10.838	1	11305000			16166	8273	11465	11485	17539	17539					0.07379815108436105
FLAPVKTEV	9	Unmodified	_FLAPVKTEV_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.294189453125	2	502.294768	1002.57498	-0.51908	-0.00026073	-0.062048	-3.1167E-05	-0.58113	-0.0002919	502.2946478943203	53.956	1.0547	53.758	53.422	54.477	-0.19739					68	29	3	0	0	0	0.077175	3	5665	5665;5682;5694		118.74	23.586	1	12476000			16167	8273	11465	11485	17540;17541;17542	17540					0.07379815108436105
FLAQFLSLF	9	Unmodified	_FLAQFLSLF_					0	0	0			REV__ENST00000574671.5_1_17:79478712-79478850:-|nuORF	REV__ENST00000574671.5_1_17:79478712-79478850:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.302978515625	2	543.305136	1084.59572	-1.2747	-0.00069256	-2.8402	-0.0015431	-4.115	-0.0022357	543.3035353328938	74.367	1.592	74.376	74.051	75.643	0.0096512					86	39	4	0	0	0	0.15029	1	9035	9035		99.375	5.3685	1	9757800	+		16168	35449	11466	11486	17543	17543					0.056804054881013144
FLAQLQQEG	9	Unmodified	_FLAQLQQEG_					0	0	0		ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.746337890625	2	517.269281	1032.52401	-0.45135	-0.00023347	-0.10068	-5.2078E-05	-0.55203	-0.00028555	517.2690898541484	48.121	0.26039	47.845	47.63	47.89	-0.27598					9	6	2	0	0	0	0.024523	1	4728	4728		37.159	15.199	1	100470			16169	1340	11467	11487	17544	17544					0.00904866063569898
FLAQLQQEG	9	Unmodified	_FLAQLQQEG_					0	0	0		ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.269281	1032.52401	-0.73635	-0.00038089	-7.6448	-0.0039544	-8.3812	-0.0043353	517.7677474949386	47.792	0.74842	47.792	47.529	48.277	0	-0.021522	-0.0031706	NaN	29.15	44	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642890			16170	1340	11467	11487							0.00904866063569898
FLAQLQQEG	9	Unmodified	_FLAQLQQEG_					0	0	0		ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.269281	1032.52401	-1.2134	-0.00062764	-7.3636	-0.003809	-8.577	-0.0044366	517.767834650637	47.745	0.69784	47.804	47.522	48.22	0.059093	-0.0094066	-0.0028796	NaN	29.15	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499220			16171	1340	11467	11487							0.00904866063569898
FLARPSPNR	9	Unmodified	_FLARPSPNR_					0	0	0		ENST00000273158.8_1_3:39432942-39433107:+|nuORF	ENST00000273158.8_1_3:39432942-39433107:+|nuORF	ENST00000273158.8_1_3:39432942-39433107:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	529.2984619140625	2	529.298707	1056.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.471	1	30.545	30.045	31.045	0.074314								0	0	0	0.32793	1	1908	1908		66.429	2.222	1				16172	11662	11468	11488	17545	17545					0.05683387148565089
FLARTMLDL	9	Unmodified	_FLARTMLDL_					0	0	0			REV__ENST00000261249.6_1_14:61447740-61448055:-|nuORF	REV__ENST00000261249.6_1_14:61447740-61448055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7633666992188	2	540.299527	1078.5845	-0.85757	-0.00046334	3.9643	0.0021419	3.1067	0.0016786	540.3016550176238	33.774	0.72157	33.83	33.538	34.26	0.056572					30	17	2	0	0	0	0.02435	1	2465	2465		51.335	17.842	1	410790	+		16173	29612	11469	11489	17546	17546					0.04835260122285945
FLAWGALLV	9	Unmodified	_FLAWGALLV_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77630615234375	2	495.294571	988.574589	0.072244	3.5782E-05	-2.8006	-0.0013871	-2.7283	-0.0013513	495.2921307291227	52.471	0.42974	52.563	52.28	52.71	0.091938					14	10	2	0	0	0	0.024389	1	5527	5527		49.211	10.189	1	105060	+		16174	20024	11470	11490	17547	17547					0.07984440179234298
FLAWVVAG	8	Unmodified	_FLAWVVAG_					0	0	0			REV__ENST00000373316.4_1_X:77359689-77359848:+|nuORF	REV__ENST00000373316.4_1_X:77359689-77359848:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.732421875	2	431.744714	861.474875	-0.26505	-0.00011443	-0.37105	-0.0001602	-0.6361	-0.00027463	431.74460303694315	34.399	0.54073	34.399	34.011	34.552	0					23	13	2	0	0	0	0.027866	1	2546	2546		43.626	16.83	1	109180	+		16175	31250	11471	11491	17548	17548					0.038596225652895555
FLCDYHYG	8	Unmodified	_FLCDYHYG_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7547912597656	2	509.210378	1016.4062	-0.18717	-9.5309E-05	1.4303	0.00072834	1.2432	0.00063303	509.2110017775487	28.823	0.79662	28.904	28.574	29.371	0.080812					38	19	3	0	0	0	0.027866	1	1693	1693		14.664	0	1	245610			16176	4087	11472	11492	17549	17549					-0.10134409796739874
FLCLRWEN	8	Carbamidomethyl (C)	_FLC(Carbamidomethyl (C))LRWEN_	FLC(1)LRWEN		FLC(77)LRWEN		0	1	0		nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.2769775390625	2	569.279126	1136.5437	-1.108	-0.00063075	-3.2636	-0.0018579	-4.3716	-0.0024886	569.2769780262627	79.841	2.7082	79.669	79.15	81.858	-0.17225					169	65	4	0	0	0	0.5947	1	9845	9845		76.774	9.2805	1	2401400			16177	8308	11473	11493	17550	17550	103				-0.019110811973177988
FLCSHLIY	8	Unmodified	_FLCSHLIY_					0	0	0		ENST00000526684.1_1_1:111772478-111773917:+|nuORF;nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2;ENST00000530597.1_1_1:111772478-111773566:+|nuORF	ENST00000526684.1_1_1:111772478-111773917:+|nuORF	ENST00000526684.1_1_1:111772478-111773917:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.25579833984375	2	498.254588	994.494624	-0.31009	-0.0001545	3.1351	0.0015621	2.825	0.0014076	498.25603384750275	62.246	0.94921	62.032	61.334	62.283	-0.21375					58	23	5	0	0	0	0.82104	1	7011	7011		57.453	0.7316	1	2303900			16178	1284	11474	11494	17551	17551					-0.002843694862690427
FLCVVMIFL	9	Unmodified	_FLCVVMIFL_					0	0	0		ENST00000602586.1_1_1:16545087-16552470:-|nuORF	ENST00000602586.1_1_1:16545087-16552470:-|nuORF	ENST00000602586.1_1_1:16545087-16552470:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8036499023438	2	542.800317	1083.58608	-0.58121	-0.00031548	-0.62665	-0.00034014	-1.2079	-0.00065563	542.8000516164873	104.11	0.86281	104.11	103.51	104.38	0					23	11	3	0	0	0	0.65391	1	13356	13356		49.211	3.2588	1	209530			16179	17530	11475	11495	17552	17552					0.04763177886684389
FLCVVMIFL	9	Unmodified	_FLCVVMIFL_					0	0	0		ENST00000602586.1_1_1:16545087-16552470:-|nuORF	ENST00000602586.1_1_1:16545087-16552470:-|nuORF	ENST00000602586.1_1_1:16545087-16552470:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.7998046875	2	542.800317	1083.58608	-0.092763	-5.0352E-05	-1.1728	-0.00063662	-1.2656	-0.00068697	542.7997582825468	103.96	0.45347	103.84	103.6	104.06	-0.12561					19	10	3	0	0	0	0.93795	1	12948	12948		29.842	1.9593	1	106030			16180	17530	11475	11495	17553	17553					0.04763177886684389
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	600.3009033203125	2	600.300778	1198.587	-0.62875	-0.00037744	0.53521	0.00032128	-0.093544	-5.6155E-05	600.3009766472863	60.769	1.7333	60.563	59.975	61.708	-0.20599					136	42	5	0	0	0	4.8747E-13	6	6787	6750;6761;6773;6787;6800;6812		218.94	130.77	1	14811000			16181	1724	11476	11496	17554;17555;17556;17557;17558;17559	17557					-0.004346129390341957
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	600.300537109375	2	600.300778	1198.587	-1.4303	-0.00085858	1.1529	0.00069211	-0.27733	-0.00016648	600.3014616321598	60.637	1.9674	60.461	60.037	62.004	-0.1761					145	48	5	0	0	0	1.9564E-13	6	6766	6743;6755;6766;6779;6792;6806		228.2	140.45	1	15401000			16182	1724	11476	11496	17560;17561;17562;17563;17564;17565	17562					-0.004346129390341957
FLDASGAKLDY	11	Unmodified	_FLDASGAKLDY_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	600.3011474609375	2	600.300778	1198.587	-0.89463	-0.00053705	0.51138	0.00030698	-0.38326	-0.00023007	600.3010703856521	60.856	2.1231	60.603	60.132	62.255	-0.25373					143	52	6	0	0	0	6.2098E-13	6	6761	6750;6761;6773;6785;6798;6813		214.71	116.12	1	17389000			16183	1724	11476	11496	17566;17567;17568;17569;17570;17571	17567					-0.004346129390341957
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.2691650390625	2	582.266404	1162.51826	-0.23547	-0.00013711	0.14639	8.524E-05	-0.089076	-5.1866E-05	582.2663942759339	63.655	1.5589	63.427	63.095	64.654	-0.22773					94	39	4	0	0	0	0.013337	3	7222	7197;7209;7222		204.62	96.537	1	5807200			16184	8155	11477	11497	17572;17573;17574	17574					-0.05650277238760282
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.2706909179688	2	582.266404	1162.51826	-0.83639	-0.000487	0.67144	0.00039096	-0.16495	-9.6044E-05	582.2666963649546	63.669	1.3625	63.476	63.148	64.51	-0.19243					92	34	4	0	0	0	0.013337	3	7226	7200;7212;7226		204.62	108.43	1	5469400			16185	8155	11477	11497	17575;17576;17577	17577					-0.05650277238760282
FLDDFESKY	9	Unmodified	_FLDDFESKY_					0	0	0		nc|ENSG00000171475|Q8TF74-2|WIPF2;ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF	nc|ENSG00000171475|Q8TF74-2|WIPF2	nc|ENSG00000171475|Q8TF74-2|WIPF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.2689819335938	2	582.266404	1162.51826	-0.24994	-0.00014553	0.038559	2.2451E-05	-0.21138	-0.00012308	582.2663690179229	63.741	1.5747	63.483	63.162	64.736	-0.25824					93	40	4	0	0	0	0.013337	3	7216	7195;7204;7216		219.56	108.43	1	6012900			16186	8155	11477	11497	17578;17579;17580	17580					-0.05650277238760282
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	615.2681274414062	2	614.767103	1227.51965	-1.1109	-0.00068295	-0.024868	-1.5288E-05	-1.1358	-0.00069824	614.7670809815819	62.506	1.6254	62.285	62.005	63.631	-0.22097					61	43	2	0	0	0	0.020911	2	7041	7029;7041		162.25	61	1	3834100			16187	1911	11478	11498	17581;17582	17582					-0.08500643149977805
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	614.7666625976562	2	614.767103	1227.51965	-1.2709	-0.00078128	0.73451	0.00045155	-0.53635	-0.00032973	614.7674323785886	62.444	0.47297	62.263	61.959	62.432	-0.1809					38	12	4	0	0	0	0.0012806	3	7027	7027;7037;7049		190.26	64.447	1	4412500			16188	1911	11478	11498	17583;17584;17585	17583					-0.08500643149977805
FLDDGHTFNY	10	Unmodified	_FLDDGHTFNY_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	614.7671508789062	2	614.767103	1227.51965	-0.55079	-0.00033861	-0.056292	-3.4607E-05	-0.60709	-0.00037322	614.7669519541688	62.572	1.2214	62.314	62.017	63.239	-0.25824					64	33	4	0	0	0	0.020911	2	7035	7035;7043		162.25	63.623	1	3414600			16189	1911	11478	11498	17586;17587	17586					-0.08500643149977805
FLDDSTALY	9	Unmodified	_FLDDSTALY_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7481079101562	2	522.747847	1043.48114	-0.12134	-6.343E-05	0.43761	0.00022876	0.31627	0.00016533	522.7479461388638	74.605	1.4942	74.329	74.045	75.539	-0.27573					76	35	4	0	0	0	0.29104	1	8786	8786		76.847	23.495	1	1742000			16190	2215	11479	11499	17588	17588					-0.03885948784522952
FLDDSTALY	9	Unmodified	_FLDDSTALY_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7484130859375	2	522.747847	1043.48114	0.29132	0.00015229	0.090611	4.7367E-05	0.38193	0.00019966	522.7477353390916	74.611	1.2645	74.348	74.01	75.275	-0.26326					70	29	4	0	0	0	0.31247	1	8797	8797		73.975	18.471	1	2042300			16191	2215	11479	11499	17589	17589					-0.03885948784522952
FLDDSTALY	9	Unmodified	_FLDDSTALY_					0	0	0		ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	ENSG00000100558|ENST00000216446|PLEK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.747802734375	2	522.747847	1043.48114	0.62882	0.00032871	-0.50714	-0.00026511	0.12167	6.3605E-05	522.7474507832471	74.465	1.6535	74.282	73.961	75.615	-0.18278					83	39	3	0	0	0	0.52323	2	8781	8758;8781		57.811	1.9584	1	2180700			16192	2215	11479	11499	17590;17591	17591					-0.03885948784522952
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7716064453125	2	522.771657	1043.52876	-0.28549	-0.00014925	0.22236	0.00011624	-0.063131	-3.3003E-05	522.7717167208921	72.353	1.1681	72.353	71.978	73.146	0					80	28	4	0	0	0	0.013995	3	8805	8793;8805;8816		181.81	93.163	1	4602100			16193	8227	11480	11500	17592;17593;17594	17593					0.008737502063468128
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7743530273438	2	522.771657	1043.52876	0.47735	0.00024954	-0.57429	-0.00030022	-0.096938	-5.0677E-05	522.7713022172895	72.725	1.1666	72.443	72.1	73.267	-0.28124					82	28	4	0	0	0	0.014013	3	8805	8805;8817;8827		166.78	79.028	1	4426600			16194	8227	11480	11500	17595;17596;17597	17595					0.008737502063468128
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7717895507812	2	522.771657	1043.52876	0.51507	0.00026927	-0.66191	-0.00034603	-0.14683	-7.676E-05	522.7712875256034	72.423	1.3086	72.433	72.131	73.44	0.0097733					86	32	4	0	0	0	0.014013	3	8746	8722;8733;8746		197.6	108.96	1	4696500			16195	8227	11480	11500	17598;17599;17600	17600					0.008737502063468128
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7716064453125	2	522.771657	1043.52876	-0.3429	-0.00017926	0.21236	0.00011101	-0.13054	-6.8241E-05	522.7716997080972	72.668	1.493	72.391	72.112	73.605	-0.2769					105	35	6	0	0	0	0.010315	6	8528	8504;8516;8528;8540;8554;8567		231.86	125.45	1	5238600			16196	8227	11480	11500	17601;17602;17603;17604;17605;17606	17603					0.008737502063468128
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7716674804688	2	522.771657	1043.52876	0.17481	9.1386E-05	-0.31594	-0.00016516	-0.14113	-7.3776E-05	522.7714130535136	72.712	1.3989	72.447	72.127	73.526	-0.26479					98	33	5	0	0	0	0.013995	5	8531	8519;8531;8543;8555;8571		197.6	107.23	1	5516500			16197	8227	11480	11500	17607;17608;17609;17610;17611	17608					0.008737502063468128
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.771484375	2	522.771657	1043.52876	-0.37844	-0.00019784	0.080817	4.2249E-05	-0.29762	-0.00015559	522.7716248981499	72.544	1.6031	72.346	71.992	73.595	-0.1981					115	38	5	0	0	0	0.013995	5	8487	8476;8487;8499;8511;8525		181.81	91.029	1	6521400			16198	8227	11480	11500	17612;17613;17614;17615;17616	17613					0.008737502063468128
FLDEIIEW	8	Unmodified	_FLDEIIEW_					0	0	0		SRD5A2|p.G196D|1|0.12|ENSG00000277893|chr2:31529418-31529418|C/T|missense_variant	SRD5A2|p.G196D|1|0.12|ENSG00000277893|chr2:31529418-31529418|C/T|missense_variant	SRD5A2|p.G196D|1|0.12|ENSG00000277893|chr2:31529418-31529418|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.31640625	2	532.768583	1063.52261	-0.80053	-0.0004265	4.4588	0.0023755	3.6582	0.001949	532.7707817414818	21.954	0.48217	21.752	21.566	22.048	-0.20198					20	9	3	0	0	0	0.027866	1	733	733		54.765	12.369	1	170460			16199	37968	11481	11501	17617	17617					-0.006607680251818238
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.2666015625	2	543.266739	1084.51892	-0.47813	-0.00025975	-0.41774	-0.00022694	-0.89586	-0.00048669	543.2663998763695	53.715	0.984	53.715	53.337	54.321	0					69	27	4	0	0	0	0.057894	3	5813	5813;5824;5836		125.81	29.624	1	3398200			16200	1019	11482	11502	17618;17619;17620	17618					-0.019954377990416106
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.2661743164062	2	543.266739	1084.51892	-1.0438	-0.00056705	0.16081	8.7363E-05	-0.88297	-0.00047969	543.266666523443	53.785	0.77801	53.638	53.31	54.088	-0.14724					72	21	5	0	0	0	0.016758	3	5812	5800;5812;5825		153.04	59.84	1	3605700			16201	1019	11482	11502	17621;17622;17623	17622					-0.019954377990416106
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.2654418945312	2	543.266739	1084.51892	-1.3019	-0.00070729	0.56016	0.00030431	-0.74176	-0.00040297	543.2668873137342	53.48	0.92	53.576	53.266	54.186	0.095669					77	25	5	0	0	0	0.027092	2	5724	5712;5724		143.89	38.37	1	3622000			16202	1019	11482	11502	17624;17625	17625					-0.019954377990416106
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.266739	1084.51892	-1.277	-0.00069374	0.69533	0.00037775	-0.58166	-0.00031599	543.2668894223091	53.726	0.63942	53.59	53.319	53.959	-0.13617	-0.041256	0.00055706	NaN	153.04	53	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1324300			16203	1019	11482	11502							-0.019954377990416106
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.266739	1084.51892	-0.36314	-0.00019728	0.093985	5.1059E-05	-0.26915	-0.00014622	543.2664412032434	53.883	0.47915	53.637	53.383	53.863	-0.2453	0.0062453	-9.6322E-05	NaN	153.04	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1652500			16204	1019	11482	11502							-0.019954377990416106
FLDEPTNHL	9	Unmodified	_FLDEPTNHL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.266739	1084.51892	-0.99863	-0.00054252	0.59642	0.00032401	-0.40221	-0.00021851	543.2667380457239	53.828	0.50223	53.631	53.387	53.889	-0.19739	-3.2311E-05	0.00044959	NaN	153.04	45	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1544500			16205	1019	11482	11502							-0.019954377990416106
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	623.29150390625	2	623.290942	1244.56733	0.068888	4.2937E-05	-0.40727	-0.00025384	-0.33838	-0.00021091	623.2906715291161	45.506	1.3855	45.407	45.084	46.47	-0.099445					134	38	6	0	0	0	0.002678	6	4325	4304;4313;4325;4337;4351;4364		186.41	69.507	1	18797000			16206	9207	11483	11503	17626;17627;17628;17629;17630;17631	17628					-0.045169889497856275
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	623.2916259765625	2	623.290942	1244.56733	-1.1101	-0.00069192	0.69026	0.00043023	-0.41985	-0.00026169	623.2913816779528	45.73	1.9471	45.469	45.149	47.096	-0.26118					130	53	5	0	0	0	0.002678	5	4337	4327;4337;4348;4360;4373		186.41	81.664	1	18769000			16207	9207	11483	11503	17632;17633;17634;17635;17636	17633					-0.045169889497856275
FLDESRSTQY	10	Unmodified	_FLDESRSTQY_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	623.2910766601562	2	623.290942	1244.56733	-0.65813	-0.00041021	0.26025	0.00016221	-0.39789	-0.000248	623.2910995205078	45.64	1.4062	45.438	45.13	46.536	-0.20226					116	39	5	0	0	0	0.011429	5	4329	4318;4329;4341;4353;4369		169.65	59.532	1	18428000			16208	9207	11483	11503	17637;17638;17639;17640;17641	17638					-0.045169889497856275
FLDEYIFLA	9	Unmodified	_FLDEYIFLA_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.789794921875	2	565.792058	1129.56956	-0.30469	-0.00017239	0.38231	0.00021631	0.077619	4.3916E-05	565.7921857000331	100.41	1.0641	100.41	100.14	101.2	0					45	24	3	0	0	0	0.64155	2	12832	12832;12843		50.025	14.406	1	383380			16209	18066	11484	11504	17642;17643	17642					0.009960915259625835
FLDEYIFLA	9	Unmodified	_FLDEYIFLA_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.7901611328125	2	565.792058	1129.56956	-0.34427	-0.00019478	0.83833	0.00047432	0.49406	0.00027954	565.7923484398424	100.33	0.99588	100.34	100.13	101.13	0.010117					36	23	3	0	0	0	0.36105	2	12801	12801;12813		68.485	20.827	1	429600			16210	18066	11484	11504	17644;17645	17644					0.009960915259625835
FLDEYIFLA	9	Unmodified	_FLDEYIFLA_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.7913208007812	2	565.792058	1129.56956	-0.39575	-0.00022391	0.61765	0.00034946	0.2219	0.00012555	565.792160705619	100.48	0.48041	100.47	100.21	100.69	-0.0052567					24	11	3	0	0	0	0.36105	2	12786	12773;12786		68.485	16.186	1	411330			16211	18066	11484	11504	17646;17647	17647					0.009960915259625835
FLDEYIFLA	9	Unmodified	_FLDEYIFLA_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.79296875	2	565.792058	1129.56956	0.5537	0.00031328	0.0088277	4.9947E-06	0.56253	0.00031827	565.7918755796701	100.43	0.53085	100.29	100.06	100.59	-0.13364					34	15	3	0	0	0	0.18276	3	12452	12442;12452;12465		92.191	33.409	1	426120			16212	18066	11484	11504	17648;17649;17650	17649					0.009960915259625835
FLDEYIFLA	9	Unmodified	_FLDEYIFLA_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.7921752929688	2	565.792058	1129.56956	0.68277	0.00038631	-0.20254	-0.0001146	0.48023	0.00027171	565.7917958061987	100.36	1.4556	100.23	100.05	101.5	-0.12504					47	40	2	0	0	0	0.18276	3	12464	12454;12464;12476		92.191	34.379	1	519590			16213	18066	11484	11504	17651;17652;17653	17652					0.009960915259625835
FLDEYIFLA	9	Unmodified	_FLDEYIFLA_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000418231.2_1_X:73350641-73351442:+|nuORF	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.7921142578125	2	565.792058	1129.56956	0.0084761	4.7957E-06	0.34506	0.00019523	0.35354	0.00020003	565.7921525897394	100.52	0.51163	100.35	100.12	100.63	-0.17088					33	14	3	0	0	0	0.33184	3	12470	12446;12470;12481		71.378	15.548	1	658070			16214	18066	11484	11504	17654;17655;17656	17655					0.009960915259625835
FLDGAGLAYNL	11	Unmodified	_FLDGAGLAYNL_					0	0	0			REV__PSMD1-ATP2C1|1|fusion	REV__PSMD1-ATP2C1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2999267578125	2	577.298039	1152.58152	-1.6483	-0.00095158	1.5363	0.00088691	-0.11202	-6.467E-05	577.2989006183841	92.612	3.5019	92.468	92.087	95.589	-0.14356					208	81	5	0	0	0	0.90725	1	11680	11680		51.193	6.8155	1	15099000	+		16215	37415	11485	11505	17657	17657					0.011337082691625255
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2638854980469	2	511.263665	1020.51278	-0.69587	-0.00035577	0.89648	0.00045834	0.20061	0.00010257	511.264057219153	80.985	3.0657	80.985	80.626	83.692	0					179	73	5	0	0	0	0.013333	5	10078	10066;10078;10089;10101;10126		176.41	46.728	1	8427000			16216	10520	11486	11506	17658;17659;17660;17661;17662	17659					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.26385498046875	2	511.263665	1020.51278	-0.76131	-0.00038923	0.95428	0.00048789	0.19296	9.8655E-05	511.26406144111894	81.205	2.642	81.074	80.66	83.302	-0.13075					138	63	4	0	0	0	0.016758	6	10083	10051;10062;10071;10083;10096;10123		211.39	58.918	1	6785100			16217	10520	11486	11506	17663;17664;17665;17666;17667;17668	17666					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2645263671875	2	511.263665	1020.51278	-1.0378	-0.00053058	1.1802	0.00060341	0.14245	7.2828E-05	511.2642190899408	81.006	2.9806	81.03	80.614	83.595	0.023903					179	71	5	0	0	0	0.012289	4	10006	9990;10006;10037;10050		227.71	36.087	1	8810800			16218	10520	11486	11506	17669;17670;17671;17672	17670					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.263916015625	2	511.263665	1020.51278	0.21794	0.00011143	-0.31257	-0.00015981	-0.094629	-4.838E-05	511.26342004372117	81.146	2.8787	80.908	80.531	83.409	-0.23784					138	67	4	0	0	0	0.0090779	6	9745	9725;9734;9745;9757;9827;9837		235.12	59.031	1	8783100			16219	10520	11486	11506	17673;17674;17675;17676;17677;17678	17675					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2638854980469	2	511.263665	1020.51278	0.11573	5.9167E-05	-0.3853	-0.00019699	-0.26957	-0.00013782	511.263426838151	81.166	2.8244	80.973	80.561	83.385	-0.19333					137	66	4	0	0	0	0.013887	4	9765	9732;9742;9753;9765		200.16	56.27	1	6885400			16220	10520	11486	11506	17679;17680;17681;17682	17682					0.003340439694284214
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2638854980469	2	511.263665	1020.51278	-0.42869	-0.00021918	0.15405	7.8761E-05	-0.27464	-0.00014041	511.26372255764835	81.111	2.885	80.968	80.576	83.461	-0.14248					141	67	4	0	0	0	0.013333	6	9710	9710;9720;9732;9745;9802;9841		185.55	42.598	1	8479700			16221	10520	11486	11506	17683;17684;17685;17686;17687;17688	17683					0.003340439694284214
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(180)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2395629882812	2	528.239332	1054.46411	-0.92442	-0.00048831	0.67953	0.00035895	-0.24489	-0.00012936	528.2396179045186	63.178	2.4231	63.178	62.769	65.192	0					170	65	5	0	0	0	0.013293	4	7373	7361;7373;7385;7397		209.84	74.486	1	25671000			16222	7943	11487	11507	17689;17690;17691;17692	17690		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(110)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2392578125	2	528.239332	1054.46411	-0.63625	-0.00033609	0.61394	0.00032431	-0.02231	-1.1785E-05	528.2394985697882	67.637	3.6181	67.637	66.41	70.029	0					256	93	4	0	0	0	0.094442	2	8125	8125;8147		112.41	40.533	1	5184300			16223	7943	11487	11507	17693;17694	17693		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(180)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2388916015625	2	528.239332	1054.46411	-0.3055	-0.00016138	0.19914	0.00010519	-0.10636	-5.6184E-05	528.2393686743193	63.425	2.7273	63.173	62.724	65.451	-0.25141					194	73	5	0	0	0	0.01388	3	7379	7379;7391;7404		180.87	69.221	1	21817000			16224	7943	11487	11507	17695;17696;17697	17695		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(120)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2391357421875	2	528.239332	1054.46411	-0.16877	-8.9152E-05	0.11111	5.8692E-05	-0.057663	-3.046E-05	528.2392665310336	67.922	3.5687	67.634	66.474	70.042	-0.28834					255	91	4	0	0	0	0.077175	1	8064	8064		118.74	15.97	1	4931700			16225	7943	11487	11507	17698	17698		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(170)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2388916015625	2	528.239332	1054.46411	1.2267	0.000648	-1.4935	-0.00078894	-0.26682	-0.00014094	528.238467567401	63.16	2.5034	63.215	62.801	65.305	0.054104					190	67	4	0	0	0	0.013924	4	7301	7278;7289;7301;7314		167.23	78.586	1	23832000			16226	7943	11487	11507	17699;17700;17701;17702	17701		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(130)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2391357421875	2	528.239332	1054.46411	0.19259	0.00010173	-0.26685	-0.00014096	-0.074258	-3.9226E-05	528.2390762959993	67.67	3.6582	67.694	66.457	70.115	0.023911					233	93	4	0	0	0	0.057894	4	7974	7963;7974;8060;8073		125.81	40.898	1	5432900			16227	7943	11487	11507	17703;17704;17705;17706	17704		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(110)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.239013671875	2	528.239332	1054.46411	0.0053558	2.8291E-06	-0.30924	-0.00016335	-0.30389	-0.00016052	528.2390543282282	68.096	3.4676	67.841	66.742	70.21	-0.25516					185	83	3	0	0	0	0.1158	1	7827	7827		107.01	7.6326	1	1931200			16228	7943	11487	11507	17707	17707		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(160)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2389526367188	2	528.239332	1054.46411	-0.02092	-1.1051E-05	-0.068476	-3.6171E-05	-0.089396	-4.7222E-05	528.2391109941838	68.01	3.4665	67.776	66.732	70.199	-0.23376					176	84	3	0	0	0	0.014918	3	7853	7828;7841;7853		162.25	48.841	1	2233000			16229	7943	11487	11507	17708;17709;17710	17710		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_		FLDGNEM(1)TL		FLDGNEM(150)TL	0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.23876953125	2	528.239332	1054.46411	0.18036	9.5272E-05	-0.49961	-0.00026391	-0.31925	-0.00016864	528.2389489734953	67.983	3.3534	67.745	66.796	70.15	-0.23814					159	81	3	0	0	0	0.020687	4	7836	7796;7805;7818;7836		148.99	58.617	1	1930100			16230	7943	11487	11507	17711;17712;17713;17714	17714		328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_					0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.239332	1054.46411	-0.25689	-0.0001357	0.13357	7.0557E-05	-0.12332	-6.5142E-05	528.2393127701971	63.56	1.9227	63.332	62.974	64.896	-0.22773	0.054051	0.00033082	NaN	180.87	84	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4191500			16231	7943	11487	11507				328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_					0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.239332	1054.46411	-0.37229	-0.00019666	0.21618	0.00011419	-0.15612	-8.2467E-05	528.2393668678066	63.591	2.1671	63.398	63.029	65.196	-0.19243	0.11986	0.00041809	NaN	180.87	87	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5249700			16232	7943	11487	11507				328			-0.060941926619761944
FLDGNEMTL	9	Oxidation (M)	_FLDGNEM(Oxidation (M))TL_					0	0	1		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.239332	1054.46411	0.36088	0.00019063	-0.56816	-0.00030013	-0.20728	-0.00010949	528.2389828864585	63.632	1.5775	63.374	63.041	64.619	-0.25824	0.095183	-0.00041055	NaN	180.87	74	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5691200			16233	7943	11487	11507				328			-0.060941926619761944
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.24169921875	2	520.241875	1038.4692	-1.1821	-0.00061498	0.74201	0.00038603	-0.44008	-0.00022895	520.2421781361415	75.748	1.5041	75.748	75.378	76.882	0					120	38	5	0	0	0	0.012289	5	9317	9295;9305;9317;9341;9366		227.71	92.902	1	15519000			16234	7943	11487	11508	17715;17716;17717;17718;17719	17717					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2411499023438	2	520.241875	1038.4692	-0.56198	-0.00029237	0.050074	2.605E-05	-0.51191	-0.00026632	520.2418519301399	75.949	1.463	75.704	75.374	76.837	-0.24455					129	37	4	0	0	0	0.010583	7	9309	9288;9297;9309;9330;9342;9354;9365		231.3	68.992	1	16750000			16235	7943	11487	11508	17720;17721;17722;17723;17724;17725;17726	17722					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2415161132812	2	520.241875	1038.4692	0.041792	2.1742E-05	-0.43698	-0.00022734	-0.39519	-0.00020559	520.2415984909967	75.758	1.4626	75.77	75.436	76.898	0.011642					119	37	4	0	0	0	0.013887	5	9227	9217;9227;9240;9265;9278		219.56	76.457	1	19533000			16236	7943	11487	11508	17727;17728;17729;17730;17731	17728					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.2415771484375	2	520.241875	1038.4692	-0.64529	-0.00033571	0.37683	0.00019604	-0.26846	-0.00013966	520.2419709055895	76.069	1.42	75.797	75.462	76.882	-0.27266					105	34	5	0	0	0	0.013094	5	9009	8998;9009;9021;9032;9046		171.38	48.289	1	6690600			16237	7943	11487	11508	17732;17733;17734;17735;17736	17733					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.2412719726562	2	520.241875	1038.4692	0.1454	7.5644E-05	-0.43011	-0.00022376	-0.28471	-0.00014812	520.2415734313493	76.037	1.4186	75.778	75.438	76.856	-0.25866					100	34	4	0	0	0	0.013065	5	9024	9003;9012;9024;9037;9050		195.81	66.131	1	7121100			16238	7943	11487	11508	17737;17738;17739;17740;17741	17739					-0.04849888799344626
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.2417602539062	2	520.241875	1038.4692	0.21036	0.00010944	-0.54926	-0.00028575	-0.3389	-0.00017631	520.2414597443791	75.893	1.5432	75.717	75.389	76.933	-0.17548					114	37	5	0	0	0	0.013887	5	8990	8970;8979;8990;9003;9015		180.93	55.112	1	7731700			16239	7943	11487	11508	17742;17743;17744;17745;17746	17744					-0.04849888799344626
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.78662109375	2	507.784567	1013.55458	0.23274	0.00011818	-0.14817	-7.5239E-05	0.084572	4.2944E-05	507.7843710463487	71.834	0.84351	71.834	71.489	72.333	0					69	21	5	0	0	0	0.15889	3	8708	8708;8723;8740		97.473	26.578	1	3120600			16240	3837	11488	11509	17747;17748;17749	17747					0.048346444486242035
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.78607177734375	2	507.784567	1013.55458	0.46865	0.00023797	-0.35575	-0.00018064	0.1129	5.7328E-05	507.78431330538507	72.144	0.8021	71.862	71.582	72.384	-0.28156					66	20	4	0	0	0	0.15889	2	8727	8727;8739		97.473	20.699	1	3271500			16241	3837	11488	11509	17750;17751	17750					0.048346444486242035
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.78668212890625	2	507.784567	1013.55458	0.39968	0.00020295	-0.28087	-0.00014262	0.11881	6.0328E-05	507.7843108034197	71.885	0.75652	71.895	71.615	72.371	0.0097733					62	19	4	0	0	0	0.15889	4	8655	8644;8655;8670;8682		97.473	20.699	1	3184900			16242	3837	11488	11509	17752;17753;17754;17755	17753					0.048346444486242035
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7847595214844	2	507.784567	1013.55458	0.083048	4.217E-05	-0.069153	-3.5115E-05	0.013895	7.0556E-06	507.78437788410685	72.205	1.2135	71.93	71.588	72.801	-0.27509					63	28	3	0	0	0	0.22754	1	8435	8435		85.359	10.843	1	1337000			16243	3837	11488	11509	17756	17756					0.048346444486242035
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7845153808594	2	507.784567	1013.55458	0.21465	0.000109	-0.22732	-0.00011543	-0.012661	-6.4291E-06	507.7843217240805	72.113	0.82927	71.851	71.559	72.388	-0.26199					50	19	3	0	0	0	0.10076	2	8456	8444;8456		110.34	36.082	1	1425200			16244	3837	11488	11509	17757;17758	17758					0.048346444486242035
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7843017578125	2	507.784567	1013.55458	-0.2451	-0.00012446	0.22893	0.00011625	-0.016169	-8.2101E-06	507.7845399522205	71.995	0.78352	71.789	71.497	72.281	-0.20613					48	18	3	0	0	0	0.10076	2	8419	8419;8431		110.34	22.583	1	1297000			16245	3837	11488	11509	17759;17760	17759					0.048346444486242035
FLDHNDLK	8	Unmodified	_FLDHNDLK_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.79302978515625	2	501.256174	1000.49779	0.011765	5.8971E-06	0.37651	0.00018873	0.38827	0.00019463	501.25578798396776	52.004	1.053	51.82	51.019	52.073	-0.18404					39	27	3	0	0	0	0.027866	1	5368	5368		69.628	21.97	1	932090			16246	2818	11489	11510	17761	17761					-0.002434031079133092
FLDITNPKA	9	Unmodified	_FLDITNPKA_					0	0	0		ENST00000489406.1_1_22:19455337-19466647:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF	ENST00000489406.1_1_22:19455337-19466647:-|nuORF	ENST00000489406.1_1_22:19455337-19466647:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7821960449219	2	509.782025	1017.5495	-0.53649	-0.00027349	3.6304	0.0018507	3.094	0.0015772	509.78212353195323	54.959	0.68835	54.813	54.533	55.221	-0.14609					69	18	5	0	0	0	0.30449	1	5868	5868		75.043	14.925	1	2102600			16247	1412	11490	11511	17762	17762					0.04142340585997317
FLDITNPKA	9	Unmodified	_FLDITNPKA_					0	0	0		ENST00000489406.1_1_22:19455337-19466647:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF	ENST00000489406.1_1_22:19455337-19466647:-|nuORF	ENST00000489406.1_1_22:19455337-19466647:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.7818298339844	2	509.782025	1017.5495	0.2117	0.00010792	3.4449	0.0017561	3.6566	0.0018641	509.7818153552901	55.044	0.70777	54.837	54.502	55.21	-0.20613					62	19	5	0	0	0	0.26413	1	5868	5868		80.455	18.347	1	2535400			16248	1412	11490	11511	17763	17763					0.04142340585997317
FLDLGPPGI	9	Unmodified	_FLDLGPPGI_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	nc|ENSG00000011275|Q9NWF9|RNF216;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2804260253906	2	464.760561	927.506569	0.12905	5.9979E-05	0.59028	0.00027434	0.71934	0.00033432	464.76052729462265	87.737	0.89154	87.737	87.449	88.34	0					24	21	2	0	0	0	0.024325	1	11064	11064		50.025	20.875	1	175080			16249	891;37841	11491	11512	17764	17764					0.03991570528569355
FLDLGPPGI	9	Unmodified	_FLDLGPPGI_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	nc|ENSG00000011275|Q9NWF9|RNF216;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.28033447265625	2	464.760561	927.506569	0.50307	0.00023381	0.29156	0.00013551	0.79463	0.00036931	464.7601842005398	87.775	0.63566	87.739	87.489	88.125	-0.035355					23	15	2	0	0	0	0.024412	1	11034	11034		24.203	5.8783	1	97084			16250	891;37841	11491	11512	17765	17765					0.03991570528569355
FLDLGPPGI	9	Unmodified	_FLDLGPPGI_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	nc|ENSG00000011275|Q9NWF9|RNF216;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.28021240234375	2	464.760561	927.506569	1.4697	0.00068307	-0.92196	-0.00042849	0.54776	0.00025458	464.75985101507706	87.694	0.68059	87.713	87.515	88.195	0.018555					27	16	2	0	0	0	0.023775	1	11004	11004		68.485	30.673	1	193330			16251	891;37841	11491	11512	17766	17766					0.03991570528569355
FLDLGPPGI	9	Unmodified	_FLDLGPPGI_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion	nc|ENSG00000011275|Q9NWF9|RNF216;RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.28045654296875	2	464.760561	927.506569	0.38722	0.00017997	-0.033372	-1.551E-05	0.35385	0.00016446	464.76032557923827	87.799	0.76514	87.663	87.262	88.027	-0.13613					26	18	2	0	0	0	0.024183	1	10716	10716		60.294	28.339	1	208200			16252	891;37841	11491	11512	17767	17767					0.03991570528569355
FLDLKNSLN	9	Unmodified	_FLDLKNSLN_					0	0	0		ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.2952270507812	2	532.292756	1062.57096	-0.032021	-1.7044E-05	3.6495	0.0019426	3.6175	0.0019256	532.2944620949154	101.17	0.86046	101.17	100.85	101.71	-0.0054398					57	19	4	0	0	0	0.247	1	12877	12877		82.75	0.50997	1	1868200			16253	9009	11492	11513	17768	17768					0.04217725614716983
FLDLPTKGEMG	11	Unmodified	_FLDLPTKGEMG_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.2068786621094	3	403.205763	1206.59546	0.56756	0.00022884	2.6667	0.0010752	3.2343	0.0013041	403.20684995404906	35.205	0.94285	35.205	34.906	35.849	0					64	24	3	0	0	0	0.95911	1	2679	2679		45.908	0.88592	1	7756500	+		16254	24236	11493	11514	17769	17769					0.00042617705935299455
FLDLTYYF	8	Unmodified	_FLDLTYYF_					0	0	0		TMEM92|p.P138Lfs*86|1|0.2|ENSG00000167105|chr17:50279237-50279237|C/-|frameshift_variant	TMEM92|p.P138Lfs*86|1|0.2|ENSG00000167105|chr17:50279237-50279237|C/-|frameshift_variant	TMEM92|p.P138Lfs*86|1|0.2|ENSG00000167105|chr17:50279237-50279237|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3324584960938	2	541.265676	1080.5168	0.25899	0.00014018	0.11699	6.3321E-05	0.37598	0.00020351	541.2661720381942	79.432	0.33411	79.186	79.028	79.362	-0.2465					10	7	2	0	0	0	0.027866	1	9484	9484		60.294	21.041	1	83265			16255	38091	11494	11515	17770	17770					-0.02023866536865171
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(150)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2779541015625	2	526.27826	1050.54197	-0.3109	-0.00016362	0.25502	0.00013421	-0.055876	-2.9407E-05	526.2781850094774	84.655	1.2003	84.655	84.3	85.5	0					79	28	4	0	0	0	0.021872	2	10602	10602;10626		148.04	14.23	1	1490600			16256	7352	11495	11516	17771;17772	17771		306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(130)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2783203125	2	526.27826	1050.54197	-0.84572	-0.00044508	0.72466	0.00038137	-0.12106	-6.371E-05	526.27845486868	84.645	1.6554	84.572	84.221	85.876	-0.072769					88	39	4	0	0	0	0.03849	2	10572	10572;10584		134.81	35.436	1	1617900			16257	7352	11495	11516	17773;17774	17773		306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(150)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2778930664062	2	526.27826	1050.54197	-0.23424	-0.00012328	0.24786	0.00013044	0.013618	7.1669E-06	526.278282941043	84.581	1.1613	84.608	84.292	85.453	0.026382					77	27	5	0	0	0	0.021872	3	10519	10519;10531;10543		148.04	39.955	1	1587300			16258	7352	11495	11516	17775;17776;17777	17775		306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(77)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2788696289062	2	526.27826	1050.54197	-0.097188	-5.1148E-05	-0.38378	-0.00020198	-0.48097	-0.00025312	526.2777683757863	86.649	1.1102	86.67	85.899	87.01	0.021263					68	25	4	0	0	0	0.28753	1	10790	10790		77.318	6.0219	1	491200			16259	7352	11495	11516	17778	17778		306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(110)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2781372070312	2	526.27826	1050.54197	0.27534	0.0001449	-0.20942	-0.00011021	0.065916	3.469E-05	526.2781183039447	84.669	0.66936	84.466	84.211	84.88	-0.20329					29	15	2	0	0	0	0.091713	1	10241	10241		113.41	17.221	1	851050			16260	7352	11495	11516	17779	17779		306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(120)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2778930664062	2	526.27826	1050.54197	0.63793	0.00033573	-0.55605	-0.00029264	0.081883	4.3093E-05	526.2778677105965	84.667	0.74635	84.509	84.192	84.939	-0.15869					31	17	2	0	0	0	0.067814	1	10254	10254		122.18	34.422	1	845510			16261	7352	11495	11516	17780	17780		306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(120)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2783203125	2	526.27826	1050.54197	0.49954	0.0002629	-1.0599	-0.00055779	-0.56034	-0.00029489	526.2776225327992	86.642	1.1266	86.499	85.711	86.838	-0.14217					47	25	2	0	0	0	0.082191	2	10524	10524;10536		116.9	34.599	1	472830			16262	7352	11495	11516	17781;17782	17781		306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_					0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.27826	1050.54197	-0.26737	-0.00014071	0.068695	3.6153E-05	-0.19868	-0.00010456	526.2780597339764	86.69	1.0705	86.69	85.871	86.941	0	0.12103	0.00058492	NaN	116.9	64	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463580			16263	7352	11495	11516				306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_					0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.27826	1050.54197	-0.19974	-0.00010512	-0.30346	-0.00015971	-0.5032	-0.00026482	526.2779727007844	86.636	0.85839	86.591	85.99	86.848	-0.045105	0.022281	0.0001932	NaN	116.9	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519950			16264	7352	11495	11516				306			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_					0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.27826	1050.54197	-0.12062	-6.3481E-05	-0.16498	-8.6823E-05	-0.2856	-0.0001503	526.2779866178386	86.706	1.2926	86.519	85.644	86.936	-0.18696	-0.04955	0.00033897	NaN	116.9	79	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459010			16265	7352	11495	11516				306			0.018718649940410614
FLDNGGSGYIL	11	Unmodified	_FLDNGGSGYIL_					0	0	0		ENSG00000139151|ENST00000266505|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;nc|ENSG00000139151|Q86YW0-2|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.2861938476562	2	578.287671	1154.56079	-1.3535	-0.00078273	-2.0784	-0.0012019	-3.4319	-0.0019846	578.2862980469232	67.102	0.7272	67.102	66.841	67.568	0					45	17	3	0	0	0	0.90725	1	8012	8012		51.193	1.7511	1	1759000			16266	5303	11496	11517	17783	17783					-0.010308821105127208
FLDNSLDTV	9	Unmodified	_FLDNSLDTV_					0	0	0		ENST00000495510.1_1_13:36900679-36920374:-|nuORF;ENSG00000133104|ENST00000438666|SPART	ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENST00000495510.1_1_13:36900679-36920374:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.8059692382812	2	512.253297	1022.49204	0.86824	0.00044476	-1.477	-0.0007566	-0.60876	-0.00031184	512.2523551938723	71.085	0.64742	70.792	70.542	71.189	-0.29291					35	15	3	0	0	0	0.023454	1	8560	8560		82.241	16.343	1	554460			16267	4681	11497	11518	17784	17784					-0.01830546410246825
FLDNSLDTV	9	Unmodified	_FLDNSLDTV_					0	0	0		ENST00000495510.1_1_13:36900679-36920374:-|nuORF;ENSG00000133104|ENST00000438666|SPART	ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENST00000495510.1_1_13:36900679-36920374:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.8064575195312	2	512.253297	1022.49204	-0.31926	-0.00016354	0.1056	5.4096E-05	-0.21366	-0.00010945	512.2533079151012	70.785	0.68597	70.796	70.593	71.279	0.010735					31	16	3	0	0	0	0.021513	1	8482	8482		104.75	25.034	1	656630			16268	4681	11497	11518	17785	17785					-0.01830546410246825
FLDPASAGIGY	11	Unmodified	_FLDPASAGIGY_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.777099609375	2	555.776939	1109.53933	0.16934	9.4116E-05	0.081432	4.5258E-05	0.25077	0.00013937	555.7768241834269	76.826	0.71563	76.558	76.211	76.927	-0.26806					43	15	4	0	0	0	0.022511	3	9115	9106;9115;9129		129.68	76.746	1	1066000			16269	6777	11498	11519	17786;17787;17788	17787					-0.01106267139243755
FLDPASAGIGY	11	Unmodified	_FLDPASAGIGY_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7771606445312	2	555.776939	1109.53933	0.29918	0.00016627	-0.21664	-0.0001204	0.082535	4.5871E-05	555.7766817193681	76.783	0.80045	76.532	76.063	76.863	-0.25162					38	14	3	0	0	0	0.066593	3	9146	9122;9134;9146		116.9	50.474	1	1033800			16270	6777	11498	11519	17789;17790;17791	17791					-0.01106267139243755
FLDPASAGIGY	11	Unmodified	_FLDPASAGIGY_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.777099609375	2	555.776939	1109.53933	-0.37733	-0.00020971	0.40746	0.00022646	0.030135	1.6748E-05	555.7770350218603	76.693	0.75871	76.524	76.181	76.939	-0.16854					48	17	4	0	0	0	0.0075183	3	9100	9088;9100;9113		143.11	49.911	1	981900			16271	6777	11498	11519	17792;17793;17794	17793					-0.01106267139243755
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.8054809570312	2	564.806031	1127.59751	-0.68748	-0.00038829	0.11233	6.3444E-05	-0.57515	-0.00032485	564.8061098895487	56.402	1.5335	56.402	55.963	57.496	0					120	42	5	0	0	0	0.0081025	4	6278	6267;6278;6289;6302		172.25	84.552	1	8723500			16272	6716	11499	11520	17795;17796;17797;17798	17796					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8062744140625	2	564.806031	1127.59751	-0.81846	-0.00046227	0.12493	7.0561E-05	-0.69353	-0.00039171	564.806189890259	56.546	1.5577	56.382	55.95	57.508	-0.16431					131	42	5	0	0	0	0.1587	4	6266	6256;6266;6277;6289		126.24	56.615	1	8322700			16273	6716	11499	11520	17799;17800;17801;17802	17800					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.80615234375	2	564.806031	1127.59751	-1.1337	-0.00064032	0.6133	0.0003464	-0.52041	-0.00029393	564.806389852053	56.231	1.4299	56.329	55.965	57.395	0.097893					140	39	6	0	0	0	0.0081025	4	6162	6162;6173;6184;6197		172.25	73.667	1	9763200			16274	6716	11499	11520	17803;17804;17805;17806	17803					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.8060913085938	2	564.806031	1127.59751	-0.23613	-0.00013337	0.32106	0.00018134	0.084931	4.797E-05	564.806104109566	56.525	1.0702	56.358	56.001	57.071	-0.1672					51	27	2	0	0	0	0.42599	2	6134	6122;6134		96.034	33.926	1	2068400			16275	6716	11499	11520	17807;17808	17808					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8056030273438	2	564.806031	1127.59751	0.30334	0.00017133	-0.13873	-7.8355E-05	0.16461	9.2972E-05	564.8058367032181	56.602	1.0124	56.4	56.052	57.064	-0.20208					48	26	2	0	0	0	0.44975	1	6131	6131		93.598	33.479	1	1992100			16276	6716	11499	11520	17809	17809					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		ENSG00000159063|ENST00000299626|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.8060913085938	2	564.806031	1127.59751	0.14985	8.4639E-05	-0.10529	-5.9468E-05	0.044565	2.5171E-05	564.8058602009369	56.693	0.96177	56.469	56.109	57.07	-0.2248					45	24	2	0	0	0	0.37307	2	6133	6133;6143		101.46	41.257	1	2102500			16277	6716	11499	11520	17810;17811	17810					0.038814145060541705
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.3054809570312	2	529.305667	1056.59678	-0.45559	-0.00024115	-0.22916	-0.00012129	-0.68474	-0.00036244	529.3056015945724	64.313	2.6507	64.086	63.549	66.2	-0.22773					116	65	4	0	0	0	0.025498	7	7315	7267;7279;7291;7303;7315;7327;7339		145.16	67.838	1	32805000			16278	614	11500	11521	17812;17813;17814;17815;17816;17817;17818	17816					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.3052978515625	2	529.305667	1056.59678	-0.40775	-0.00021583	-0.2247	-0.00011894	-0.63245	-0.00033476	529.305624089798	64.286	2.8693	64.094	63.565	66.435	-0.19243					151	71	7	0	0	0	0.03666	7	7318	7272;7282;7294;7306;7318;7330;7342		136.27	45.898	1	37109000			16279	614	11500	11521	17819;17820;17821;17822;17823;17824;17825	17823					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.3055419921875	2	529.305667	1056.59678	-0.36422	-0.00019278	-0.33899	-0.00017943	-0.70321	-0.00037221	529.3055481364011	64.346	2.6594	64.09	63.716	66.375	-0.25563					147	66	7	0	0	0	0.01896	7	7311	7264;7275;7287;7299;7311;7323;7335		150.36	57.166	1	38189000			16280	614	11500	11521	17826;17827;17828;17829;17830;17831;17832	17830					0.07074619856962272
FLDPRQPSY	9	Unmodified	_FLDPRQPSY_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.7931518554688	2	561.782556	1121.55056	-0.54648	-0.000307	3.1691	0.0017803	2.6226	0.0014733	561.7843584803738	52.461	0.27816	52.342	52.282	52.56	-0.11875					11	6	2	0	0	0	0.45795	1	5450	5450		62.107	3.3255	1	1021700			16281	10234	11501	11522	17833	17833					-0.005354450451022785
FLDQANFEL	9	Unmodified	_FLDQANFEL_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.7681884765625	2	548.769114	1095.52368	-1.145	-0.00062835	1.1523	0.00063235	0.0072985	4.0052E-06	548.7695054172259	83.662	1.1546	83.662	83.309	84.463	0					60	26	4	0	0	0	0.038547	2	10475	10463;10475		134.77	30.019	1	1555200			16282	6152	11502	11523	17834;17835	17835					-0.02026553656287433
FLDQANFEL	9	Unmodified	_FLDQANFEL_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.7686767578125	2	548.769114	1095.52368	-1.0932	-0.0005999	1.0214	0.00056051	-0.071763	-3.9381E-05	548.7694810927653	83.707	0.94366	83.616	83.385	84.328	-0.090454					51	21	4	0	0	0	0.038547	2	10433	10433;10445		134.77	24.646	1	1562600			16283	6152	11502	11523	17836;17837	17836					-0.02026553656287433
FLDQANFEL	9	Unmodified	_FLDQANFEL_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.7684936523438	2	548.769114	1095.52368	-1.3221	-0.00072552	1.2753	0.00069983	-0.046811	-2.5688E-05	548.7696085742994	83.587	1.1575	83.614	83.3	84.457	0.026558					59	26	4	0	0	0	0.016953	3	10379	10370;10379;10393		152.06	41.941	1	1580100			16284	6152	11502	11523	17838;17839;17840	17839					-0.02026553656287433
FLDQNLQKY	9	Unmodified	_FLDQNLQKY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.8029174804688	2	584.803488	1167.59242	-0.89871	-0.00052557	-0.091884	-5.3734E-05	-0.99059	-0.0005793	584.803685151809	53.547	4.699	53.411	53.057	57.756	-0.13617					330	129	6	0	0	0	0.0085723	17	5675	5590;5602;5614;5626;5638;5650;5662;5675;5688;5701;5714;5726;5738;5750;5774;5792;5804		251.33	98.864	1	241760000			16285	2053	11503	11524	17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857	17848					0.01533110643413238
FLDQNLQKY	9	Unmodified	_FLDQNLQKY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.8031005859375	2	584.803488	1167.59242	-0.92048	-0.0005383	-0.24659	-0.0001442	-1.1671	-0.00068251	584.8035757463743	53.752	2.5477	53.507	53.125	55.673	-0.2453					266	74	6	0	0	0	0.0090779	15	5631	5609;5619;5631;5643;5655;5667;5680;5694;5706;5724;5736;5761;5790;5802;5814		235.12	82.647	1	245940000			16286	2053	11503	11524	17858;17859;17860;17861;17862;17863;17864;17865;17866;17867;17868;17869;17870;17871;17872	17860					0.01533110643413238
FLDQNLQKY	9	Unmodified	_FLDQNLQKY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.8030395507812	2	584.803488	1167.59242	-0.79466	-0.00046472	-0.47602	-0.00027838	-1.2707	-0.0007431	584.8034784871837	53.636	2.6419	53.439	53.049	55.691	-0.19739					280	74	6	0	0	0	0.0085723	16	5675	5591;5601;5613;5625;5637;5649;5661;5675;5687;5700;5712;5725;5737;5767;5791;5803		251.33	84.552	1	245410000			16287	2053	11503	11524	17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884;17885;17886;17887;17888	17880					0.01533110643413238
FLDSTSPLL	9	Unmodified	_FLDSTSPLL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.76885986328125	2	496.768583	991.522613	-0.10637	-5.2843E-05	0.14629	7.2671E-05	0.039914	1.9828E-05	496.7684506925131	81.338	1.6439	81.338	80.978	82.622	0					80	39	5	0	0	0	0.034181	4	10130	10119;10130;10144;10157		138.24	44.236	1	2144700			16288	5048	11504	11525	17889;17890;17891;17892	17890					0.026512319748235313
FLDSTSPLL	9	Unmodified	_FLDSTSPLL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7686767578125	2	496.768583	991.522613	-0.61611	-0.00030606	0.63929	0.00031758	0.023183	1.1516E-05	496.7686485519649	81.53	1.7347	81.399	81.055	82.789	-0.13075					74	41	4	0	0	0	0.028181	3	10120	10109;10120;10133		143.02	30.588	1	2269300			16289	5048	11504	11525	17893;17894;17895	17894					0.026512319748235313
FLDSTSPLL	9	Unmodified	_FLDSTSPLL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.76861572265625	2	496.768583	991.522613	-0.53952	-0.00026802	0.5481	0.00027228	0.0085764	4.2605E-06	496.7686387446007	81.366	1.8638	81.39	81.007	82.871	0.023911					82	44	5	0	0	0	0.016838	4	10073	10040;10049;10061;10073		152.63	42.296	1	2719600			16290	5048	11504	11525	17896;17897;17898;17899	17899					0.026512319748235313
FLDSTSPLL	9	Unmodified	_FLDSTSPLL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.76824951171875	2	496.768583	991.522613	0.099839	4.9597E-05	-0.078876	-3.9183E-05	0.020963	1.0414E-05	496.76836879240665	81.498	1.2694	81.27	80.939	82.208	-0.22891					53	29	3	0	0	0	0.074956	3	9791	9778;9791;9803		119.56	30.914	1	952710			16291	5048	11504	11525	17900;17901;17902	17901					0.026512319748235313
FLDSTSPLL	9	Unmodified	_FLDSTSPLL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.7681579589844	2	496.768583	991.522613	0.23148	0.00011499	-0.24066	-0.00011955	-0.0091865	-4.5636E-06	496.76823583333896	81.465	1.1782	81.272	80.966	82.144	-0.19334					58	27	4	0	0	0	0.13494	2	9793	9793;9804		102.77	25.927	1	1114400			16292	5048	11504	11525	17903;17904	17903					0.026512319748235313
FLDSTSPLL	9	Unmodified	_FLDSTSPLL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.76837158203125	2	496.768583	991.522613	-0.62425	-0.00031011	0.49114	0.00024399	-0.1331	-6.6122E-05	496.7686347471216	81.419	1.1818	81.277	80.858	82.04	-0.14249					56	27	4	0	0	0	0.074956	3	9766	9766;9777;9789		119.56	18.345	1	1135400			16293	5048	11504	11525	17905;17906;17907	17905					0.026512319748235313
FLDVKKFL	8	Unmodified	_FLDVKKFL_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7843322753906	2	505.307678	1008.6008	0.012629	6.3814E-06	-1.3079	-0.00066091	-1.2953	-0.00065453	505.3065350042413	98.641	0.99072	98.641	98.233	99.224	0					47	22	3	0	0	0	0.027866	1	12546	12546		33.516	3.1979	1	128210			16294	18199	11505	11526	17908	17908					0.09684709350722187
FLEALLEGCP	10	Unmodified	_FLEALLEGCP_					0	0	0			REV__ENSG00000196620|ENST00000338206|UGT2B15	REV__ENSG00000196620|ENST00000338206|UGT2B15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.259765625	2	546.275718	1090.53688	0.84326	0.00046065	2.3988	0.0013104	3.2421	0.0017711	546.276972649095	59.907	0.37377	59.71	59.537	59.911	-0.19742					11	9	2	0	0	0	0.03519	1	6624	6624		51.335	10.763	1	158850	+		16295	28206	11506	11527	17909	17909					-0.0047643886853165895
FLECPRPLS	9	Unmodified	_FLECPRPLS_					0	0	0		ENST00000435786.6_2_15:74327038-74327191:+|nuORF	ENST00000435786.6_2_15:74327038-74327191:+|nuORF	ENST00000435786.6_2_15:74327038-74327191:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.842529296875	2	531.276052	1060.53755	-0.7977	-0.0004238	-3.192	-0.0016958	-3.9897	-0.0021196	531.2735422942609	51.357	0.25244	51.208	51.082	51.335	-0.14916					7	6	2	0	0	0	0.024261	1	5421	5421		54.776	16.965	1	55793			16296	14268	11507	11528	17910	17910					0.00970400571168284
FLECPRPLS	9	Unmodified	_FLECPRPLS_					0	0	0		ENST00000435786.6_2_15:74327038-74327191:+|nuORF	ENST00000435786.6_2_15:74327038-74327191:+|nuORF	ENST00000435786.6_2_15:74327038-74327191:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.276052	1060.53755	-1.2703	-0.00067489	-2.8099	-0.0014928	-4.0802	-0.0021677	531.7764569082963	51.549	0.15805	51.273	51.195	51.353	-0.27643	0.032368	0.00022485	NaN	54.776	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42121			16297	14268	11507	11528							0.00970400571168284
FLEDKALMI	9	Oxidation (M)	_FLEDKALM(Oxidation (M))I_		FLEDKALM(1)I		FLEDKALM(120)I	0	0	1		ENSG00000160602|ENST00000268766|NEK8;ENST00000593261.1_1_17:27055855-27062286:+|nuORF;ENST00000584342.5_1_17:27052953-27062286:+|nuORF	ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3079833984375	2	548.291368	1094.56818	-0.64832	-0.00035547	1.1483	0.00062959	0.49995	0.00027412	548.2921220718835	101.42	0.13263	101.43	101.34	101.47	0.0090332					4	2	2	0	0	0	0.019502	1	12952	12952		124.59	33.818	1	18099			16298	6826	11508	11529	17911	17911		282			0.024681341655195865
FLEDQLKNL	9	Unmodified	_FLEDQLKNL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.321533203125	2	560.305864	1118.59717	-0.11081	-6.2086E-05	-1.485	-0.00083207	-1.5958	-0.00089416	560.8059757891771	68.082	0.30814	67.794	67.593	67.901	-0.28834					10	7	2	0	0	0	0.024477	1	8087	8087		35.618	0	1	237140			16299	1175	11509	11530	17912	17912					0.04261994786179457
FLEDTTLTI	9	Unmodified	_FLEDTTLTI_					0	0	0		nc|ENSG00000105549|Q9P2T0-2|SPMAP2;THEG|p.A367Sfs*7|1|0.09|ENSG00000105549|chr19:362245-362246|-/G|frameshift_variant;ENSG00000105549|ENST00000342640|THEG	nc|ENSG00000105549|Q9P2T0-2|SPMAP2	nc|ENSG00000105549|Q9P2T0-2|SPMAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3146362304688	2	526.779148	1051.54374	0.34882	0.00018375	1.3683	0.00072079	1.7171	0.00090454	526.7794416907296	73.806	0.93514	73.806	73.741	74.676	0					27	21	2	0	0	0	0.021088	1	9136	9136		115.46	35.52	1	301230			16300	2690	11510	11531	17913	17913					0.02003197283670488
FLEFVEDEP	9	Unmodified	_FLEFVEDEP_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.3533325195312	2	562.760955	1123.50736	0.08289	4.6647E-05	-3.7507	-0.0021107	-3.6678	-0.0020641	563.2582884446924	74.417	0.25591	74.159	74.071	74.327	-0.25887					8	5	2	0	0	0	0.024354	1	9070	9070		23.042	7.4007	1	69120	+		16301	25337	11511	11532	17914	17914					-0.04945679613047105
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.328857421875	2	528.328611	1054.64267	-0.65171	-0.00034432	0.5277	0.0002788	-0.12401	-6.5519E-05	528.3287531117466	77.648	3.1214	77.648	77.209	80.331	0					219	74	5	0	0	0	0.17822	5	9584	9572;9584;9596;9608;9621		93.195	21.318	1	9009000			16302	884	11512	11533	17915;17916;17917;17918;17919	17916					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.328857421875	2	528.328611	1054.64267	0.15921	8.4116E-05	-0.35196	-0.00018595	-0.19275	-0.00010184	528.3282826111483	77.79	2.7414	77.579	77.165	79.907	-0.21087					194	65	5	0	0	0	0.12602	5	9567	9558;9567;9579;9591;9605		104.75	27.9	1	9107700			16303	884	11512	11533	17920;17921;17922;17923;17924	17921					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.32861328125	2	528.328611	1054.64267	-0.26133	-0.00013807	0.01579	8.3421E-06	-0.24554	-0.00012973	528.3284762998932	77.663	3.4585	77.679	77.19	80.648	0.015907					233	82	5	0	0	0	0.17822	4	9508	9498;9508;9520;9532		93.195	25.702	1	9212900			16304	884	11512	11533	17925;17926;17927;17928	17926					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.3287963867188	2	528.328611	1054.64267	-0.18869	-9.9691E-05	0.11516	6.0845E-05	-0.073527	-3.8846E-05	528.3285134235288	77.82	1.8284	77.558	77.184	79.012	-0.26202					117	42	4	0	0	0	0.12602	3	9239	9239;9248;9263		104.75	27.9	1	2318300			16305	884	11512	11533	17929;17930;17931	17929					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.3291015625	2	528.328611	1054.64267	0.46865	0.0002476	-0.59085	-0.00031216	-0.12219	-6.4559E-05	528.3281122531096	77.709	1.9041	77.467	77.19	79.095	-0.24232					119	44	4	0	0	0	0.32811	3	9277	9251;9262;9277		71.877	10.906	1	2689200			16306	884	11512	11533	17932;17933;17934	17934					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.3284912109375	2	528.328611	1054.64267	-0.15194	-8.0276E-05	-0.13658	-7.2158E-05	-0.28852	-0.00015243	528.3283563422877	77.652	1.8731	77.49	77.183	79.056	-0.16196					114	43	4	0	0	0	0.12602	1	9232	9232		104.75	27.9	1	2862700			16307	884	11512	11533	17935	17935					0.11753265039214966
FLELLRSH	8	Unmodified	_FLELLRSH_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7641296386719	2	507.790184	1013.56581	-1.0126	-0.00051417	-2.6742	-0.001358	-3.6868	-0.0018721	507.7890673509575	22.47	0.5731	22.544	22.172	22.745	0.073954					27	11	4	0	0	0	0.027866	1	710	710		38.806	9.6566	1	149120			16308	3766	11513	11534	17936	17936					0.059574665427589935
FLEMCQDL	8	Oxidation (M)	_FLEM(Oxidation (M))CQDL_		FLEM(1)CQDL		FLEM(82)CQDL	0	0	1		nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F;FAM83F|p.R320Gfs*33|1|0.24|ENSG00000133477|chr22:40021465-40021534|GCTCGAAAGCTTATCAACCCCAAGTACGCCTTGGTGTCAGGCTGCCGCCACCCGCCTGGGGAGATGATGC/-|frameshift_variant	nc|ENSG00000133477|Q8NEG4-2|FAM83F	nc|ENSG00000133477|Q8NEG4-2|FAM83F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.76971435546875	2	507.717178	1013.4198	-1.227	-0.00062297	-2.7793	-0.0014111	-4.0063	-0.0020341	508.21661087654803	36.254	0.17471	36.254	36.195	36.37	0					6	4	2	0	0	0	0.027866	1	2873	2873		82.305	13.82	1	48454			16309	4712	11514	11535	17937	17937		187			-0.08636920079811716
FLEMKIPS	8	Unmodified	_FLEMKIPS_					0	0	0		nc|ENSG00000198075|O75897-2|SULT1C4;ENSG00000198075|ENST00000272452|SULT1C4	nc|ENSG00000198075|O75897-2|SULT1C4	nc|ENSG00000198075|O75897-2|SULT1C4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.7623291015625	2	482.762246	963.50994	0.4426	0.00021367	-0.17638	-8.5152E-05	0.26622	0.00012852	482.761939462758	86.207	0.78683	86.02	85.729	86.516	-0.18696					50	17	4	0	0	0	0.87148	1	10444	10444		53.351	3.3269	1	679060			16310	10093	11515	11536	17938	17938					0.02672497310925337
FLENEMVL	8	Unmodified	_FLENEMVL_					0	0	0			REV__nc|ENSG00000167749|Q9Y5K2|KLK4	REV__nc|ENSG00000167749|Q9Y5K2|KLK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.268310546875	2	497.749336	993.484119	0.0025632	1.2758E-06	2.8485	0.0014178	2.8511	0.0014191	497.7504938058984	36.537	0.35368	36.537	36.37	36.724	0					14	9	2	0	0	0	0.027866	1	2913	2913		29.15	0	1	151500	+		16311	26191	11516	11537	17939	17939					-0.012883969313520538
FLEQVHQLY	9	Unmodified	_FLEQVHQLY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.8059692382812	2	588.806031	1175.59751	-0.6424	-0.00037825	0.35716	0.0002103	-0.28525	-0.00016795	588.8061879482709	62.206	0.5827	61.993	61.7	62.283	-0.21375					45	14	4	0	0	0	0.03201	2	6992	6981;6992		139.97	59.516	1	2738000			16312	3443	11517	11538	17940;17941	17941					0.01673414506035442
FLEQVHQLY	9	Unmodified	_FLEQVHQLY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.8056640625	2	588.806031	1175.59751	-1.6235	-0.00095594	1.3688	0.00080598	-0.25469	-0.00014996	588.8067845689609	62.135	0.76815	61.957	61.615	62.383	-0.17781					57	19	4	0	0	0	0.016758	2	6974	6974;6984		153.04	51.107	1	3112600			16313	3443	11517	11538	17942;17943	17942					0.01673414506035442
FLEQVHQLY	9	Unmodified	_FLEQVHQLY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.805908203125	2	588.806031	1175.59751	-0.89053	-0.00052435	0.56184	0.00033082	-0.32869	-0.00019353	588.8063011391257	62.296	0.58414	62.037	61.743	62.327	-0.25824					45	14	4	0	0	0	0.013924	2	6991	6980;6991		167.23	71.038	1	3054600			16314	3443	11517	11538	17944;17945	17945					0.01673414506035442
FLERFRGP	8	Unmodified	_FLERFRGP_					0	0	0		ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.28857421875	2	511.282526	1020.5505	-0.95014	-0.00048579	3.846	0.0019664	2.8958	0.0014806	511.2819150096111	83.876	0.6082	83.903	83.598	84.206	0.026558					49	13	5	0	0	0	0.99042	1	10410	10410		38.806	1.647	1	1413000			16315	9287	11518	11539	17946	17946					0.04104599745562609
FLEYAMMV	8	Oxidation (M)	_FLEYAM(Oxidation (M))MV_		FLEYAM(0.5)M(0.5)V		FLEYAM(0)M(0)V	0	0	1			REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7817687988281	2	510.232464	1018.45038	-1.1112	-0.00056699	-0.55554	-0.00028346	-1.6668	-0.00085044	510.23037679552766	43.657	0.72577	43.657	43.296	44.022	0					56	19	5	0	0	0	0.027866	1	4151	4151		86.935	32.158	2	1193600	+		16316	19699	11519	11540	17947	17947		607;608			-0.05811141694755406
FLFAQPESI	9	Unmodified	_FLFAQPESI_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7241821289062	2	526.276575	1050.5386	0.18881	9.9368E-05	2.8054	0.0014764	2.9942	0.0015758	526.2777683048679	88.862	0.75093	88.724	88.356	89.107	-0.13762					26	17	2	0	0	0	0.024457	1	10873	10873		45.952	3.5558	1	116180	+		16317	29071	11520	11541	17948	17948					0.015349382117165078
FLFCCFILF	9	Unmodified	_FLFCCFILF_					0	0	0		ENST00000529765.5_1_11:125442423-125447639:+|nuORF	ENST00000529765.5_1_11:125442423-125447639:+|nuORF	ENST00000529765.5_1_11:125442423-125447639:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.7825317382812	2	576.784667	1151.55478	-0.24821	-0.00014316	-3.9221	-0.0022622	-4.1703	-0.0024054	576.7822400949027	65.926	1.9371	65.684	64.6	66.538	-0.24145					163	49	4	0	0	0	0.65391	1	7568	7568		49.211	4.8336	1	1844500			16318	16214	11521	11542	17949	17949					-0.014933951474176865
FLFDGMVAVC	10	Unmodified	_FLFDGMVAVC_					0	0	0			REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2620239257812	2	551.259013	1100.50347	-0.74245	-0.00040928	-2.2429	-0.0012364	-2.9854	-0.0016457	551.2566338435684	91.332	0.59118	91.32	91.156	91.748	-0.012383					21	13	2	0	0	0	0.03519	1	11555	11555		38.806	8.9646	1	136560	+		16319	27840	11522	11543	17950	17950					-0.042757639120964086
FLFDGSANL	9	Unmodified	_FLFDGSANL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.2450866699219	2	492.245275	982.475997	0.0093935	4.6239E-06	-0.036447	-1.7941E-05	-0.027053	-1.3317E-05	492.2451454933895	84.874	2.5271	84.671	83.316	85.843	-0.20329					106	59	4	0	0	0	0.014454	2	10253	10253;10261		185.55	91.543	1	2340700			16320	7065	11523	11544	17951;17952	17951					-0.015942078564876283
FLFDGSANL	9	Unmodified	_FLFDGSANL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2455139160156	2	492.245275	982.475997	0.87297	0.00042972	-0.71696	-0.00035292	0.15601	7.6794E-05	492.2447842917761	84.834	1.589	84.675	84.236	85.825	-0.15868					81	37	4	0	0	0	0.013065	2	10264	10255;10264		171.53	81.319	1	3497300			16321	7065	11523	11544	17953;17954	17954					-0.015942078564876283
FLFDGSANL	9	Unmodified	_FLFDGSANL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.2453308105469	2	492.245275	982.475997	0.65658	0.0003232	-0.54935	-0.00027041	0.10723	5.2784E-05	492.2448217413733	84.84	2.7172	84.702	83.506	86.224	-0.13789					143	63	5	0	0	0	0.015841	2	10249	10239;10249		200.16	88.509	1	3137600			16322	7065	11523	11544	17955;17956	17956					-0.015942078564876283
FLFDGSANL	9	Unmodified	_FLFDGSANL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.245275	982.475997	0.7362	0.00036239	-0.80412	-0.00039583	-0.067922	-3.3434E-05	492.24472955231903	84.809	1.073	84.809	84.258	85.331	0	0.073725	-0.00054588	NaN	171.53	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686440			16323	7065	11523	11544							-0.015942078564876283
FLFDGSANL	9	Unmodified	_FLFDGSANL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.245275	982.475997	-0.56473	-0.00027799	0.4018	0.00019778	-0.16294	-8.0205E-05	492.2453320937893	84.847	1.0781	84.774	84.134	85.213	-0.072769	0.03936	0.00064134	NaN	171.53	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	664360			16324	7065	11523	11544							-0.015942078564876283
FLFDGSANL	9	Unmodified	_FLFDGSANL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.245275	982.475997	-0.51525	-0.00025363	0.43448	0.00021387	-0.080775	-3.9761E-05	492.2454085612505	84.753	1.0358	84.779	84.333	85.369	0.025528	0.043757	0.00067351	NaN	171.53	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022000			16325	7065	11523	11544							-0.015942078564876283
FLFDSWISG	9	Unmodified	_FLFDSWISG_					0	0	0			REV__nc|ENSG00000167578|P61018-2|RAB4B	REV__nc|ENSG00000167578|P61018-2|RAB4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7981567382812	2	536.260925	1070.5073	-0.42842	-0.00022974	4.294	0.0023027	3.8656	0.0020729	536.2631897661266	88.825	0.58833	88.687	88.44	89.028	-0.13751					18	13	2	0	0	0	0.024487	1	10858	10858		24.203	11.996	1	69539	+		16326	35804	11524	11545	17957	17957					-0.025136348223895766
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.3050537109375	2	525.305136	1048.59572	-0.64997	-0.00034143	0.56954	0.00029918	-0.080435	-4.2253E-05	525.305249471493	69.637	0.68494	69.637	69.308	69.993	0					57	16	5	0	0	0	0.11092	2	8396	8396;8408		108.09	37.408	1	2839200			16327	2247	11525	11546	17958;17959	17958					0.07336405488103992
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.3051147460938	2	525.305136	1048.59572	0.43343	0.00022768	-0.69791	-0.00036662	-0.26448	-0.00013893	525.3046012001267	69.943	0.65162	69.65	69.348	70	-0.29291					54	15	5	0	0	0	0.091713	2	8397	8397;8408		113.41	50.105	1	2798700			16328	2247	11525	11546	17960;17961	17960					0.07336405488103992
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.3048706054688	2	525.305136	1048.59572	-0.24884	-0.00013072	-0.015649	-8.2207E-06	-0.26449	-0.00013894	525.3049477783512	69.713	0.78961	69.726	69.242	70.032	0.012733					53	19	5	0	0	0	0.14024	2	8317	8317;8330		101.6	41.908	1	2919200			16329	2247	11525	11546	17962;17963	17962					0.07336405488103992
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3050537109375	2	525.305136	1048.59572	-0.60868	-0.00031974	0.28867	0.00015164	-0.32	-0.0001681	525.3051899844114	69.932	0.95112	69.665	69.247	70.198	-0.26724					62	22	5	0	0	0	0.14024	3	8115	8115;8127;8141		101.6	36.135	1	2644600			16330	2247	11525	11546	17964;17965;17966	17964					0.07336405488103992
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3043212890625	2	525.305136	1048.59572	-0.00022784	-1.1968E-07	-0.88545	-0.00046513	-0.88568	-0.00046525	525.3042500007302	69.838	0.90715	69.587	69.156	70.063	-0.25063					59	21	4	0	0	0	0.14024	3	8116	8106;8116;8127		101.6	33.58	1	2890100			16331	2247	11525	11546	17967;17968;17969	17968					0.07336405488103992
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3043823242188	2	525.305136	1048.59572	0.05395	2.834E-05	-0.74187	-0.00038971	-0.68792	-0.00036137	525.3043700181959	69.759	0.86313	69.536	69.185	70.048	-0.22245					65	20	5	0	0	0	0.14024	3	8099	8088;8099;8111		101.6	40.629	1	3055200			16332	2247	11525	11546	17970;17971;17972	17971					0.07336405488103992
FLFFFPEV	8	Unmodified	_FLFFFPEV_					0	0	0			REV__ENST00000372546.8_1_9:131851330-131851423:+|nuORF	REV__ENST00000372546.8_1_9:131851330-131851423:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7965087890625	2	523.273304	1044.53206	-0.24673	-0.00012911	4.0922	0.0021413	3.8454	0.0020122	523.2752720930705	39.735	1.0072	39.511	39.035	40.043	-0.22311					52	25	3	0	0	0	0.027866	1	3306	3306		37.028	0	1	796290	+		16333	31208	11526	11547	17973	17973					0.01157045050990746
FLFGHNTAR	9	Unmodified	_FLFGHNTAR_					0	0	0			REV__ENST00000316084.9_1_X:71492477-71493137:-|nuORF	REV__ENST00000316084.9_1_X:71492477-71493137:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.322021484375	2	531.777608	1061.54066	-0.10189	-5.418E-05	0.11916	6.3369E-05	0.017278	9.1882E-06	531.7774905929735	75.312	0.42254	75.322	75.012	75.435	0.010376					15	10	2	0	0	0	0.024495	1	9147	9147		26.693	0	1	705680	+		16334	30276	11527	11548	17974	17974					0.012354117401628173
FLFHDIII	8	Unmodified	_FLFHDIII_					0	0	0		ENST00000238831.8_1_2:32517356-32517413:+|nuORF	ENST00000238831.8_1_2:32517356-32517413:+|nuORF	ENST00000238831.8_1_2:32517356-32517413:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.326416015625	2	509.292028	1016.5695	0.46436	0.0002365	-0.66435	-0.00033835	-0.19999	-0.00010185	509.2909203318458	78.087	0.42017	77.844	77.575	77.995	-0.24232					13	9	2	0	0	0	0.027866	1	9281	9281		44.531	0	1	90070			16335	11269	11528	11549	17975	17975					0.06188136316620785
FLFHTLCAI	9	Unmodified	_FLFHTLCAI_					0	0	0		ENST00000335712.10_2_2:60686003-60686195:-|nuORF	ENST00000335712.10_2_2:60686003-60686195:-|nuORF	ENST00000335712.10_2_2:60686003-60686195:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7813720703125	2	532.783513	1063.55247	-0.50531	-0.00026922	-3.4991	-0.0018643	-4.0044	-0.0021335	532.7816028927816	57.313	1.1667	57.088	56.582	57.749	-0.2248					75	30	3	0	0	0	0.33184	1	6241	6241		71.378	12.596	1	7227500			16336	12395	11529	11550	17976	17976					0.023238924391534965
FLFIKKTKKMD	11	Unmodified	_FLFIKKTKKMD_					0	0	0			REV__ENST00000476559.2_1_X:38128881-38132749:-|nuORF	REV__ENST00000476559.2_1_X:38128881-38132749:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	466.942138671875	3	466.944103	1397.81048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.551	1	97.551	97.051	98.051	0								0	0	0	1.5542	1	12448	12448		12.957	0	1		+		16337	33310	11530	11551	17977	17977					0.12748584241512617
FLFKLLLSF	9	Unmodified	_FLFKLLLSF_					0	0	0			REV__ENST00000420027.3_1_20:48698513-48698663:-|nuORF	REV__ENST00000420027.3_1_20:48698513-48698663:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2593994140625	2	564.346803	1126.67905	-0.53573	-0.00030234	3.0889	0.0017432	2.5532	0.0014409	564.3484174797194	27.332	0.55342	27.164	26.892	27.445	-0.16816					31	12	3	0	0	0	0.024541	1	1461	1461		23.042	6.5693	1	225630	+		16338	32153	11531	11552	17978	17978					0.12078141935944586
FLFLFLSDE	9	Unmodified	_FLFLFLSDE_					0	0	0			REV__ENST00000335712.10_2_2:60686003-60686195:-|nuORF	REV__ENST00000335712.10_2_2:60686003-60686195:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.7915649414062	2	565.792058	1129.56956	-0.30469	-0.00017239	0.38231	0.00021631	0.077619	4.3916E-05	565.7921857000331	100.41	1.0641	100.41	100.14	101.2	0					45	24	3	0	0	0	0.36105	1	12857	12857		68.485	10.673	1	383380	+		16339	30535	11532	11553	17979	17979					0.009960915259625835
FLFLFWGVS	9	Unmodified	_FLFLFWGVS_					0	0	0		ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000177839|ENST00000316105|PCDHB9	ENSG00000120324|ENST00000239446|PCDHB10	ENSG00000120324|ENST00000239446|PCDHB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.816162109375	2	558.299853	1114.58515	0.087009	4.8577E-05	-3.5536	-0.001984	-3.4666	-0.0019354	558.2973782751798	74.99	0.86527	74.714	74.438	75.303	-0.27573					50	20	5	0	0	0	0.024466	1	8914	8914		42.474	1.9018	1	652940			16340	3807	11533	11554	17980	17980					0.032444228336544256
FLFLLMIG	8	Unmodified	_FLFLLMIG_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7593078613281	2	477.280075	952.545597	-0.7405	-0.00035342	0.3764	0.00017965	-0.36409	-0.00017377	477.27995003701636	22.497	0.70686	22.571	22.317	23.024	0.073954					22	14	2	0	0	0	0.027866	1	806	806		16.705	0	1	41016			16341	5443	11534	11555	17981	17981					0.06742579558590478
FLFLLMIG	8	Unmodified	_FLFLLMIG_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	477.280075	952.545597	0.039076	1.865E-05	0.17488	8.3469E-05	0.21396	0.00010212	477.27969396290024	22.653	0.51249	22.578	22.317	22.829	-0.075296	0.036468	-0.0014992	NaN	16.705	20	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43409			16342	5443	11534	11555							0.06742579558590478
FLFLLMIG	8	Unmodified	_FLFLLMIG_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.280075	952.545597	0.66508	0.00031743	2.4682	0.001178	3.1333	0.0014955	477.2811656532309	22.586	0.37018	22.397	22.236	22.606	-0.18894	-0.14461	0.00068994	NaN	16.705	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35945			16343	5443	11534	11555							0.06742579558590478
FLFLLMIG	8	Unmodified	_FLFLLMIG_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.280075	952.545597	0.84615	0.00040385	2.5035	0.0011949	3.3497	0.0015987	477.28132327500714	22.786	0.41663	22.584	22.33	22.747	-0.20199	0.042306	0.00072363	NaN	16.705	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78998			16344	5443	11534	11555							0.06742579558590478
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.323486328125	2	547.32386	1092.63317	-1.0475	-0.00057334	1.1002	0.00060215	0.052637	2.881E-05	547.324770951434	75.055	1.8396	75.055	74.757	76.597	0					88	47	2	0	0	0	0.016838	2	9188	9188;9198		152.63	72.694	1	6136500			16345	3768	11535	11556	17982;17983	17982					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3234252929688	2	547.32386	1092.63317	-0.84265	-0.0004612	0.74297	0.00040665	-0.099673	-5.4554E-05	547.3245034189827	75.301	1.7111	75.056	74.757	76.469	-0.24455					85	44	2	0	0	0	0.016838	3	9196	9186;9196;9208		152.63	78.659	1	6313100			16346	3768	11535	11556	17984;17985;17986	17985					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3234252929688	2	547.32386	1092.63317	-0.61065	-0.00033422	0.40887	0.00022379	-0.20178	-0.00011044	547.3243039273036	75.101	1.7949	75.112	74.815	76.61	0.010376					84	46	2	0	0	0	0.034181	2	9121	9121;9131		138.24	58.303	1	6311800			16347	3768	11535	11556	17987;17988	17987					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3240356445312	2	547.32386	1092.63317	-0.18253	-9.9903E-05	2.554	0.0013979	2.3715	0.001298	547.3261442619547	75.227	1.9067	74.951	74.638	76.544	-0.27573					101	46	4	0	0	0	0.016838	3	8871	8871;8882;8894		152.63	65.622	1	3494800			16348	3768	11535	11556	17989;17990;17991	17989					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.32421875	2	547.32386	1092.63317	-0.30661	-0.00016782	2.5701	0.0014066	2.2634	0.0012388	547.3260890719943	75.228	1.8658	74.97	74.655	76.521	-0.25866					88	45	4	0	0	0	0.016838	3	8891	8881;8891;8906		152.63	73.182	1	4240300			16349	3768	11535	11556	17992;17993;17994	17993					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3235473632812	2	547.32386	1092.63317	0.0047091	2.5774E-06	0.23502	0.00012863	0.23973	0.00013121	547.3240394824372	75.022	1.0268	74.84	74.435	75.462	-0.18126					56	24	4	0	0	0	0.028071	3	8858	8846;8858;8873		143.11	58.165	1	2950000			16350	3768	11535	11556	17995;17996;17997	17996					0.0905549675369457
FLFNLPLNI	9	Unmodified	_FLFNLPLNI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MSMS	OPSCC_40_ClassI_Rep-1	4	545.81689453125	2	545.81841	1089.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.29	1	107.17	106.67	107.67	-0.1238								0	0	0	0.49654	1	13348	13348		53.351	0	1				16351	3231	11536	11557	17998	17998					0.08104094379405069
FLFNTENKL	9	Unmodified	_FLFNTENKL_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.3012084960938	2	563.300581	1124.58661	-0.18969	-0.00010685	-0.64357	-0.00036252	-0.83326	-0.00046937	563.3000623306385	63.883	0.7797	63.655	63.404	64.184	-0.22773					43	19	3	0	0	0	0.013337	1	7247	7247		176.44	59.541	1	1400500			16352	1351	11537	11558	17999	17999					0.029300121317419325
FLFNTENKL	9	Unmodified	_FLFNTENKL_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.300581	1124.58661	0.79167	0.00044595	-0.2987	-0.00016826	0.49297	0.00027769	563.3002335142628	63.648	0.65343	63.648	63.373	64.026	0	-0.021843	0.00030117	NaN	176.44	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592630			16353	1351	11537	11558							0.029300121317419325
FLFNTENKL	9	Unmodified	_FLFNTENKL_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.300581	1124.58661	-0.16972	-9.5605E-05	0.34098	0.00019207	0.17126	9.6468E-05	563.3005983011443	63.866	0.68641	63.615	63.336	64.023	-0.25141	-0.054974	0.0010218	NaN	176.44	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584290			16354	1351	11537	11558							0.029300121317419325
FLFNTENKL	9	Unmodified	_FLFNTENKL_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.300581	1124.58661	1.2614	0.00071053	-0.91418	-0.00051496	0.34719	0.00019557	563.2998292681934	63.646	0.57246	63.7	63.447	64.019	0.054104	0.03047	-0.00039223	NaN	176.44	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514630			16355	1351	11537	11558							0.029300121317419325
FLFPQLEQI	9	Unmodified	_FLFPQLEQI_					0	0	0			REV__nc|ENSG00000251608|P0DN82|OR12D1;REV__ENSG00000280236|ENST00000642051|OR12D2	REV__ENSG00000280236|ENST00000642051|OR12D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3087768554688	2	567.813325	1133.6121	-1.1634	-0.00066059	-3.5077	-0.0019917	-4.6711	-0.0026523	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.16638	2	8310	8275;8310		95.815	5.4157	1	13770000	+		16356	37169;29236	11538	11559	18000;18001	18001					0.050634866541713563
FLFPWGKLL	9	Unmodified	_FLFPWGKLL_					0	0	0			REV__ENST00000356166.10_3_16:30670409-30670715:+|nuORF	REV__ENST00000356166.10_3_16:30670409-30670715:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2792358398438	2	560.83132	1119.64809	0.72059	0.00040413	-1.4792	-0.00082956	-0.75856	-0.00042543	560.8284963545344	84.609	0.54911	84.45	84.149	84.698	-0.15869					15	12	2	0	0	0	0.024466	1	10252	10252		33.516	8.0654	1	110830	+		16357	30787	11539	11560	18002	18002					0.09304988621715893
FLFSFVVVV	9	Unmodified	_FLFSFVVVV_					0	0	0		nc|ENSG00000258986|Q6ZVK1-2|TMEM179;ENSG00000258986|ENST00000556573|TMEM179	nc|ENSG00000258986|Q6ZVK1-2|TMEM179	nc|ENSG00000258986|Q6ZVK1-2|TMEM179	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.8176879882812	2	528.810054	1055.60555	-0.018893	-9.9906E-06	-0.93558	-0.00049474	-0.95447	-0.00050473	529.3115379189359	32.279	0.13192	32.086	31.986	32.118	-0.19261					4	2	2	0	0	0	0.024487	1	2197	2197		31.955	5.2619	1	21958			16358	10933	11540	11561	18003	18003					0.07997593493473687
FLFSFVVVV	9	Unmodified	_FLFSFVVVV_					0	0	0		nc|ENSG00000258986|Q6ZVK1-2|TMEM179;ENSG00000258986|ENST00000556573|TMEM179	nc|ENSG00000258986|Q6ZVK1-2|TMEM179	nc|ENSG00000258986|Q6ZVK1-2|TMEM179	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.810054	1055.60555	-0.098544	-5.2111E-05	4.6006	0.0024328	4.502	0.0023807	528.8123575920105	32.116	0.25657	31.879	31.654	31.91	-0.23667	-0.10364	0.005419	NaN	30.504	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104200			16359	10933	11540	11561							0.07997593493473687
FLFSMATLL	9	Unmodified	_FLFSMATLL_					0	0	0		ENSG00000188706|ENST00000357166|ZDHHC9	ENSG00000188706|ENST00000357166|ZDHHC9	ENSG00000188706|ENST00000357166|ZDHHC9	MSMS	OPSCC_39_ClassI_Rep-1	1	521.7876586914062	2	521.785721	1041.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.465	1	69.465	68.965	69.965	0								0	0	0	0.25637	1	8370	8370		71.296	0	1				16360	9741	11541	11562	18004	18004					0.03777356862065062
FLFSMATLL	9	Unmodified	_FLFSMATLL_					0	0	0		ENSG00000188706|ENST00000357166|ZDHHC9	ENSG00000188706|ENST00000357166|ZDHHC9	ENSG00000188706|ENST00000357166|ZDHHC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7890014648438	2	521.785721	1041.55689	0.47931	0.0002501	-3.1814	-0.00166	-2.7021	-0.0014099	521.7836838911643	69.925	0.56635	69.632	69.312	69.878	-0.29291					47	13	5	0	0	0	0.25032	1	8378	8378		82.305	8.3303	1	4849000			16361	9741	11541	11562	18005	18005					0.03777356862065062
FLFSNIKL	8	Unmodified	_FLFSNIKL_					0	0	0		ENST00000371627.4_1_10:93624052-93624112:+|nuORF	ENST00000371627.4_1_10:93624052-93624112:+|nuORF	ENST00000371627.4_1_10:93624052-93624112:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2900390625	2	491.292028	980.569503	-0.60574	-0.00029759	-3.662	-0.0017991	-4.2677	-0.0020967	491.2901471375091	73.762	1.0908	73.771	73.558	74.648	0.0096512					48	25	3	0	0	0	0.6536	1	8958	8958		71.296	2.811	1	5584100			16362	13008	11542	11563	18006	18006					0.07844136316600725
FLFSPGLWL	9	Unmodified	_FLFSPGLWL_					0	0	0		nc|ENSG00000189350|Q6ZUX3-3|TOGARAM2;ENST00000475900.1_1_2:29256310-29268401:+|nuORF	nc|ENSG00000189350|Q6ZUX3-3|TOGARAM2	nc|ENSG00000189350|Q6ZUX3-3|TOGARAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7633056640625	2	540.299853	1078.58515	-0.81685	-0.00044135	2.8059	0.001516	1.9891	0.0010747	540.3014928420215	33.952	0.70899	33.952	33.662	34.371	0					35	17	3	0	0	0	0.024294	1	2544	2544		55.504	11.878	1	394830			16363	15073	11543	11564	18007	18007					0.04900422833657103
FLFSPSSLPL	10	Unmodified	_FLFSPSSLPL_					0	0	0		ENST00000591254.1_1_19:12841477-12841717:-|nuORF	ENST00000591254.1_1_19:12841477-12841717:-|nuORF	ENST00000591254.1_1_19:12841477-12841717:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3052978515625	2	554.307875	1106.6012	-0.88005	-0.00048782	-3.3252	-0.0018432	-4.2052	-0.002331	554.3059575570084	75.594	1.3606	75.594	75.155	76.516	0					93	35	4	0	0	0	0.79525	2	9306	9282;9306		60.972	4.2509	1	8513400			16364	17348	11544	11565	18008;18009	18009					0.05216084279913957
FLFSPSSLPL	10	Unmodified	_FLFSPSSLPL_					0	0	0		ENST00000591254.1_1_19:12841477-12841717:-|nuORF	ENST00000591254.1_1_19:12841477-12841717:-|nuORF	ENST00000591254.1_1_19:12841477-12841717:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.30517578125	2	554.307875	1106.6012	0.29766	0.000165	-4.4672	-0.0024762	-4.1695	-0.0023112	554.3053230362917	75.615	1.5245	75.625	75.25	76.774	0.010376					98	39	4	0	0	0	0.65054	1	9229	9229		71.296	1.6681	1	9403400			16365	17348	11544	11565	18010	18010					0.05216084279913957
FLFSQLQYL	9	Unmodified	_FLFSQLQYL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MSMS	OPSCC_39_ClassI_Rep-1	1	579.8128051757812	2	579.813325	1157.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.036	1	98.036	97.536	98.536	0								0	0	0	0.1093	1	12516	12516		90.37	13.596	1				16366	6477	11545	11566	18011	18011					0.03959486654207467
FLFSQLQYL	9	Unmodified	_FLFSQLQYL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.814208984375	2	579.813325	1157.6121	0.66036	0.00038289	-0.5949	-0.00034493	0.065458	3.7953E-05	579.8128377884217	98.086	0.79462	98.083	97.68	98.474	-0.0020828					34	18	3	0	0	0	0.15366	1	12445	12445		98.629	13.714	1	235940			16367	6477	11545	11566	18012	18012					0.03959486654207467
FLFSQLQYL	9	Unmodified	_FLFSQLQYL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	579.813325	1157.6121	-0.11867	-6.8804E-05	0.29528	0.00017121	0.17661	0.0001024	579.8132789060404	97.943	0.63051	97.953	97.684	98.315	0.010231	0.094019	0.00061515	NaN	98.629	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218870			16368	6477	11545	11566							0.03959486654207467
FLFSQLQYL	9	Unmodified	_FLFSQLQYL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	579.813325	1157.6121	0.72168	0.00041844	-1.0995	-0.00063749	-0.37779	-0.00021905	579.8123197458026	97.824	0.40456	97.687	97.377	97.781	-0.13671	-0.17231	-0.0010022	NaN	98.629	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54853			16369	6477	11545	11566							0.03959486654207467
FLFSQLQYL	9	Unmodified	_FLFSQLQYL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	579.813325	1157.6121	0.47161	0.00027345	0.073336	4.2521E-05	0.54495	0.00031597	579.812945627234	97.837	0.35649	97.713	97.417	97.774	-0.12372	-0.14587	0.00035778	NaN	98.629	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48750			16370	6477	11545	11566							0.03959486654207467
FLFSRKFD	8	Unmodified	_FLFSRKFD_					0	0	0			REV__ENST00000545673.5_1_18:44444163-44497308:-|nuORF	REV__ENST00000545673.5_1_18:44444163-44497308:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.316162109375	2	530.284734	1058.55492	-0.22827	-0.00012105	-3.9644	-0.0021023	-4.1927	-0.0022233	530.2825835167594	36.627	0.55903	36.422	36.164	36.723	-0.20518					19	13	2	0	0	0	0.027866	1	2856	2856		65.803	31.631	1	389230	+		16371	34826	11546	11567	18013	18013					0.02798064168473502
FLFSSTQHN	9	Unmodified	_FLFSSTQHN_					0	0	0		ENST00000488206.5_1_1:62175075-62189407:-|nuORF	ENST00000488206.5_1_1:62175075-62189407:-|nuORF	ENST00000488206.5_1_1:62175075-62189407:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7633666992188	2	540.759081	1079.50361	-0.8102	-0.00043812	-3.2231	-0.0017429	-4.0333	-0.002181	541.2588865521777	34.275	0.28138	34.275	34.09	34.371	0					10	6	2	0	0	0	0.024477	1	2534	2534		35.618	10.044	1	43739			16372	15388	11547	11568	18014	18014					-0.032963045962333126
FLFTSDYQP	9	Unmodified	_FLFTSDYQP_					0	0	0			REV__ENST00000556494.5_1_9:34646906-34647602:+|nuORF	REV__ENST00000556494.5_1_9:34646906-34647602:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2649536132812	2	559.263665	1116.51278	1.115	0.00062357	1.7808	0.00099595	2.8958	0.0016195	559.2644755057369	82.938	1.8312	82.827	81.278	83.109	-0.11006					86	43	3	0	0	0	0.4752	1	10348	10348		60.972	6.1956	1	1304400	+		16373	28758	11548	11569	18015	18015					-0.04081956030586298
FLFVDCKLQ	9	Unmodified	_FLFVDCKLQ_					0	0	0		RFPL2|p.R301C|1|0.25|ENSG00000128253|chr22:32191008-32191008|G/A|missense_variant	RFPL2|p.R301C|1|0.25|ENSG00000128253|chr22:32191008-32191008|G/A|missense_variant	RFPL2|p.R301C|1|0.25|ENSG00000128253|chr22:32191008-32191008|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.7908325195312	2	556.794078	1111.5736	0.27128	0.00015104	-4.3007	-0.0023946	-4.0294	-0.0022435	556.791366092089	67.206	1.7647	66.958	66.673	68.437	-0.24839					97	43	4	0	0	0	0.45795	1	7769	7769		62.107	5.3864	1	1931600			16374	37832	11549	11570	18016	18016					0.022278577479937667
FLFVPNLIA	9	Unmodified	_FLFVPNLIA_					0	0	0		ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.296630859375	2	517.307678	1032.6008	0.38275	0.000198	-3.8849	-0.0020097	-3.5021	-0.0018117	517.3055391116808	78.503	0.64374	78.272	77.963	78.607	-0.23141					23	14	2	0	0	0	0.024354	1	9390	9390		38.806	7.2763	1	173510			16375	16885	11550	11571	18017	18017					0.08580709350712823
FLFVPNLIA	9	Unmodified	_FLFVPNLIA_					0	0	0		ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.307678	1032.6008	-0.51968	-0.00026883	-1.1277	-0.00058336	-1.6474	-0.00085219	517.8072361182337	78.539	0.46007	78.539	78.323	78.783	0	0.12233	0.0024734	NaN	38.806	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145290			16376	16885	11550	11571							0.08580709350712823
FLFVPNLIA	9	Unmodified	_FLFVPNLIA_					0	0	0		ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.307678	1032.6008	0.21676	0.00011213	-3.4913	-0.0018061	-3.2746	-0.001694	517.3062670347648	78.671	0.45803	78.479	78.216	78.674	-0.1921	0.062364	2.7893E-05	NaN	38.806	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169130			16377	16885	11550	11571							0.08580709350712823
FLFVPNLIA	9	Unmodified	_FLFVPNLIA_					0	0	0		ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	ENST00000564296.5_1_16:29872547-29874223:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.307678	1032.6008	-0.69189	-0.00035792	-2.6286	-0.0013598	-3.3205	-0.0017177	517.3063649999975	78.595	0.41836	78.611	78.397	78.816	0.015907	0.19444	0.00092045	NaN	38.806	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104950			16378	16885	11550	11571							0.08580709350712823
FLFVSQNPN	9	Unmodified	_FLFVSQNPN_					0	0	0			REV__ENSG00000112308|ENST00000378119|C6orf62	REV__ENSG00000112308|ENST00000378119|C6orf62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7879638671875	2	533.271824	1064.5291	-0.20692	-0.00011035	2.5939	0.0013832	2.387	0.0012729	533.2733647876183	74.211	0.51019	73.952	73.817	74.327	-0.25887					15	11	2	0	0	0	0.024319	1	9066	9066		47.657	0	1	183380	+		16379	21992	11551	11572	18018	18018					-0.0005883007379452465
FLFWYTLL	8	Unmodified	_FLFWYTLL_					0	0	0			REV__ENSG00000127948|ENST00000461988|POR	REV__ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2890014648438	2	551.802229	1101.5899	-0.91254	-0.00050354	3.5338	0.00195	2.6213	0.0014464	551.8040738468574	45.401	0.23529	45.253	45.044	45.279	-0.1488					9	6	2	0	0	0	0.027866	1	4360	4360		65.897	12.961	1	135880	+		16380	22954	11552	11573	18019	18019					0.04317306976417967
FLGAIMIFVW	10	Unmodified	_FLGAIMIFVW_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	599.8276977539062	2	598.830463	1195.64637	-0.94441	-0.00056554	-0.8583	-0.00051397	-1.8027	-0.0010795	599.3337968762801	82.352	0.21684	82.212	82.086	82.303	-0.14014					5	4	2	0	0	0	0.03519	1	9902	9902		19.36	4.6959	1	22465	+		16381	19953	11553	11574	18020	18020					0.05637611541419574
FLGALASSK	9	Unmodified	_FLGALASSK_					0	0	0			REV__ENST00000373741.8_1_1:31532324-31538588:-|nuORF	REV__ENST00000373741.8_1_1:31532324-31538588:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.26873779296875	2	447.258185	892.501818	0.079358	3.5493E-05	0.51434	0.00023004	0.59369	0.00026553	447.25825137798626	63.279	0.70409	63.279	62.854	63.558	0					32	18	3	0	0	0	0.024506	1	7347	7347		16.473	0	1	486520	+		16382	31270	11554	11575	18021	18021					0.05126686385801804
FLGAPRGVLSL	11	Unmodified	_FLGAPRGVLSL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.806640625	2	565.340041	1128.66553	-0.79751	-0.00045086	-2.9904	-0.0016906	-3.7879	-0.0021415	565.338403507884	28.951	0.37906	28.954	28.713	29.092	0.0031376					21	8	3	0	0	0	0.024727	1	1703	1703		31.53	0	1	164870	+		16383	24045	11555	11576	18022	18022					0.10634284156708418
FLGEDLLQV	9	Unmodified	_FLGEDLLQV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000469947.5_1_22:38037007-38038623:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2817993164062	2	517.281857	1032.54916	-1.2674	-0.00065562	1.9502	0.0010088	0.68278	0.00035319	517.282835783309	91.532	0.76749	91.532	91.256	92.024	0					31	17	2	0	0	0	0.45795	1	11604	11604		62.107	1.7038	1	861390			16384	2130	11556	11577	18023	18023					0.034189208661246084
FLGEGLTLPL	10	Unmodified	_FLGEGLTLPL_					0	0	0		ENST00000483009.1_1_1:32667411-32667510:+|nuORF	ENST00000483009.1_1_1:32667411-32667510:+|nuORF	ENST00000483009.1_1_1:32667411-32667510:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.7890625	2	530.307875	1058.6012	-0.12405	-6.5783E-05	2.4436	0.0012959	2.3195	0.0012301	530.3091389853743	71.611	0.914	71.611	71.026	71.94	0					51	23	3	0	0	0	0.03519	1	8730	8730		45.952	30.31	1	1076200			16385	15274	11557	11578	18024	18024					0.07424084279909948
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	577.2981567382812	2	577.298039	1152.58152	-1.3062	-0.00075407	1.4025	0.00080964	0.096261	5.5571E-05	577.2987567378443	92.812	1.9498	92.812	92.412	94.362	0					112	46	4	0	0	0	4.4598E-06	6	11775	11752;11763;11775;11787;11800;11813		239.13	108.1	1	3475400			16386	2184	11558	11579	18025;18026;18027;18028;18029;18030	18027					0.011337082691625255
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.2976684570312	2	577.298039	1152.58152	-0.5891	-0.00034009	0.53159	0.00030688	-0.057516	-3.3204E-05	577.2982520806238	92.758	2.2755	92.75	91.708	93.984	-0.0082932					115	54	4	0	0	0	9.7956E-06	6	11728	11716;11728;11740;11752;11766;11779		223.88	105.14	1	3359500			16387	2184	11558	11579	18031;18032;18033;18034;18035;18036	18032					0.011337082691625255
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	577.2982177734375	2	577.298039	1152.58152	-0.37881	-0.00021868	0.3377	0.00019496	-0.041101	-2.3728E-05	577.2982419221796	92.811	2.7275	92.819	91.483	94.211	0.0077209					141	65	5	0	0	0	4.4598E-06	6	11712	11677;11688;11701;11712;11726;11738		254.98	116.15	1	3556900			16388	2184	11558	11579	18037;18038;18039;18040;18041;18042	18040					0.011337082691625255
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2984008789062	2	577.298039	1152.58152	-1.6483	-0.00095158	1.5363	0.00088691	-0.11202	-6.467E-05	577.2989006183841	92.612	3.5019	92.468	92.087	95.589	-0.14356					208	81	5	0	0	0	4.5665E-06	9	11371	11360;11371;11383;11395;11407;11421;11433;11445;11458		274.96	133.01	1	15099000			16389	2184	11558	11579	18043;18044;18045;18046;18047;18048;18049;18050;18051	18044					0.011337082691625255
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.29833984375	2	577.298039	1152.58152	-0.47467	-0.00027403	0.28117	0.00016232	-0.1935	-0.00011171	577.298185425484	92.688	3.4599	92.566	92.182	95.642	-0.12242					222	80	5	0	0	0	4.4598E-06	9	11385	11375;11385;11397;11409;11421;11434;11446;11459;11472		254.98	125.3	1	14875000			16390	2184	11558	11579	18052;18053;18054;18055;18056;18057;18058;18059;18060	18053					0.011337082691625255
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2981567382812	2	577.298039	1152.58152	-0.25495	-0.00014718	0.07965	4.5982E-05	-0.1753	-0.0001012	577.2980687321744	92.781	3.5118	92.637	92.208	95.72	-0.1441					204	81	5	0	0	0	4.8662E-06	10	11378	11368;11378;11389;11401;11413;11426;11439;11452;11463;11475		274.96	149.14	1	15500000			16391	2184	11558	11579	18061;18062;18063;18064;18065;18066;18067;18068;18069;18070	18062					0.011337082691625255
FLGGADPQ	8	Unmodified	_FLGGADPQ_					0	0	0			REV__ENSG00000095951|ENST00000379388|HIVEP1	REV__ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.18804931640625	2	402.697961	803.381368	0.55305	0.00022271	-2.1506	-0.00086603	-1.5975	-0.00064332	402.6977870866123	36.669	0.40412	36.464	36.242	36.647	-0.20518					12	9	2	0	0	0	0.027866	1	2899	2899		40.573	28.366	1	94479	+		16392	20979	11559	11580	18071	18071					-0.028187216078094934
FLGIEKRTV	9	Unmodified	_FLGIEKRTV_					0	0	0		ENST00000399070.3_2_18:32886088-32886400:+|nuORF	ENST00000399070.3_2_18:32886088-32886400:+|nuORF	ENST00000399070.3_2_18:32886088-32886400:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.84228515625	2	531.818941	1061.62333	-0.24433	-0.00012994	3.3674	0.0017908	3.123	0.0016609	532.320896409294	51.327	0.11142	51.327	51.248	51.359	0					4	2	2	0	0	0	0.024397	1	5437	5437		47.657	5.2612	1	52696			16393	13632	11560	11581	18072	18072					0.09498308748311501
FLGKIFAF	8	Unmodified	_FLGKIFAF_					0	0	0		ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	MSMS	OPSCC_40_ClassI_Rep-3	6	471.77703857421875	2	471.776014	941.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.99	1	28.841	28.341	29.341	-0.14952								0	0	0	0.54229	1	1717	1717		52.299	4.3836	1				16394	6095	11561	11582	18073	18073					0.06436768633466272
FLGKVAIPL	9	Unmodified	_FLGKVAIPL_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;nc|ENSG00000140563|Q6DN12-4|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2;nc|ENSG00000175471|Q6DN14-5|MCTP1;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	ENSG00000175471|ENST00000515393|MCTP1;ENST00000456504.5_1_15:94858078-95022260:+|nuORF	ENSG00000175471|ENST00000515393|MCTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2846984863281	2	479.310221	956.605889	0.32205	0.00015436	-3.8939	-0.0018664	-3.5719	-0.001712	479.307044670073	76.031	0.18953	76.043	75.976	76.166	0.011635					5	4	2	0	0	0	0.024535	1	9295	9295		33.516	19.74	1	34041			16395	8562;5427	11562	11583	18074	18074					0.12585013213322327
FLGKVTNPSEA	11	Unmodified	_FLGKVTNPSEA_					0	0	0		CON__A2I7N1;CON__Q9TTE1;CON__A2I7N0	CON__A2I7N1;CON__Q9TTE1	CON__A2I7N1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.311767578125	2	581.808771	1161.60299	4.953	0.0028817	-4.1958	-0.0024412	0.75712	0.0004405	581.8061962073949	17.867	0.89192	17.928	17.754	18.646	0.06036					33	19	3	0	0	0	1.0718	1	173	173		19.104	1.6355	1	182640		+	16396	478;575	11563	11584	18075	18075					0.028650932978507626
FLGLVVATE	9	Unmodified	_FLGLVVATE_					0	0	0			REV__ENST00000263856.8_1_2:86732031-86732436:-|nuORF	REV__ENST00000263856.8_1_2:86732031-86732436:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.7513427734375	2	474.773668	947.532783	0.55693	0.00026442	-3.3796	-0.0016045	-2.8227	-0.0013401	474.77187834319534	20.028	0.63483	19.804	19.631	20.266	-0.22344					21	12	3	0	0	0	0.024457	1	526	526		29.15	0.89528	1	160870	+		16397	29698	11564	11585	18076	18076					0.05691839700034507
FLGNIFGSLI	10	Unmodified	_FLGNIFGSLI_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.7640991210938	2	540.808042	1079.60153	-0.92624	-0.00050092	1.0081	0.00054517	0.081822	4.425E-05	540.8082895062818	77.086	0.66321	76.875	76.502	77.165	-0.21087					21	15	2	0	0	0	0.03519	1	9499	9499		42.864	0	1	422420	+		16398	24429	11565	11586	18077	18077					0.06491503999768611
FLGPKESN	8	Unmodified	_FLGPKESN_					0	0	0			REV__ENST00000512085.5_1_5:43454598-43483943:-|nuORF	REV__ENST00000512085.5_1_5:43454598-43483943:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.2317810058594	2	446.232168	890.449782	0.033022	1.4735E-05	-0.72532	-0.00032366	-0.6923	-0.00030893	446.23190028192755	101.14	1.7305	101.14	100.62	102.35	0					118	39	5	0	0	0	1.0284	1	12948	12948		32.812	0.85756	1	6954500	+		16399	34132	11566	11587	18078	18078					0.00017522972052574914
FLGRGPCGP	9	Unmodified	_FLGRGPCGP_					0	0	0		SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|45|3|anti-sense	SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|45|3|anti-sense	SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|45|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2289123535156	2	452.228905	902.443257	0.13816	6.248E-05	-1.9309	-0.0008732	-1.7927	-0.00081072	452.228130338477	102.79	1.1452	102.8	102.46	103.6	0.0054245					58	27	4	0	0	0	0.96121	1	13164	13164		28.254	1.4582	1	3091700			16400	38038	11567	11588	18079	18079					-0.01186693460317656
FLGSAELSKLL	11	Unmodified	_FLGSAELSKLL_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3429565429688	2	589.344989	1176.67542	-0.98297	-0.00057931	-2.0956	-0.001235	-3.0785	-0.0018143	589.3435769896907	103.58	0.62865	103.59	103.35	103.98	0.0054245					48	16	4	0	0	0	0.90725	1	13241	13241		51.193	1.7511	1	621970	+		16401	27265	11568	11589	18080	18080					0.09415427371436635
FLGSIKLP	8	Unmodified	_FLGSIKLP_					0	0	0			REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.7716064453125	2	437.773471	873.53239	0.033949	1.4862E-05	-4.3529	-0.0019056	-4.319	-0.0018907	437.7714397312737	22.069	0.67659	21.867	21.469	22.146	-0.20199					28	13	3	0	0	0	1.0133	1	726	726		35.201	0	1	252710	+		16402	34016	11569	11590	18081	18081					0.09056464770844741
FLGSIKLP	8	Unmodified	_FLGSIKLP_					0	0	0			REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.773471	873.53239	-0.48564	-0.0002126	-10.777	-0.0047179	-11.263	-0.0049305	437.7687719644531	21.543	0.33353	21.543	21.342	21.676	0	-0.19138	-0.0050443	NaN	35.201	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14666	+		16403	34016	11569	11590							0.09056464770844741
FLGSIKLP	8	Unmodified	_FLGSIKLP_					0	0	0			REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	437.773471	873.53239	-0.20954	-9.1731E-05	-11.634	-0.0050931	-11.844	-0.0051848	437.76816989955495	21.588	0.33199	21.498	21.304	21.636	-0.090092	-0.23644	-0.0057947	NaN	35.201	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12945	+		16404	34016	11569	11590							0.09056464770844741
FLGSIKLP	8	Unmodified	_FLGSIKLP_					0	0	0			REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	REV__ENST00000505916.5_1_4:186316867-186317047:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.773471	873.53239	-0.41749	-0.00018277	-3.8194	-0.001672	-4.2369	-0.0018548	437.7716074285794	22.111	0.61998	21.926	21.569	22.189	-0.18572	0.19161	0.0010474	NaN	35.201	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237080	+		16405	34016	11569	11590							0.09056464770844741
FLGTDVAFLI	10	Unmodified	_FLGTDVAFLI_					0	0	0			REV__ENSG00000179639|ENST00000693622|FCER1A	REV__ENSG00000179639|ENST00000693622|FCER1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3085327148438	2	548.307875	1094.6012	-0.56933	-0.00031217	0.08789	4.8191E-05	-0.48144	-0.00026398	548.307774593908	101.61	1.8886	101.61	100.99	102.88	0					101	43	4	0	0	0	0.49678	1	12993	12993		88.643	16.765	1	2686600	+		16406	27287	11570	11591	18082	18082					0.05768084279907271
FLGVTLVPQP	10	Unmodified	_FLGVTLVPQP_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2470092773438	2	535.815867	1069.61718	0.37232	0.0001995	0.759	0.00040668	1.1313	0.00060618	535.8161070504515	70.523	1.3138	70.23	69.795	71.109	-0.29291					65	36	2	0	0	0	0.03519	1	8505	8505		51.335	10.557	1	3659200			16407	662	11571	11592	18083	18083					0.08515790516798916
FLGVVVIIFD	10	Unmodified	_FLGVVVIIFD_					0	0	0			REV__nc|ENSG00000151067|Q13936-17|CACNA1C;REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.3345947265625	2	561.333893	1120.65323	0.23007	0.00012915	1.4755	0.00082826	1.7056	0.00095741	561.3344176475864	105	0.39376	104.83	104.63	105.02	-0.16484					29	15	3	0	0	0	1.1166	1	13062	13062		30.504	6.3009	1	115260	+		16408	24748;21275	11572	11593	18084	18084					0.09773247693669873
FLGWIGAI	8	Unmodified	_FLGWIGAI_					0	0	0		ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.7508239746094	2	438.752539	875.490525	-1.0678	-0.00046849	-3.5527	-0.0015587	-4.6204	-0.0020272	438.7508854383763	44.872	0.64803	44.773	44.472	45.12	-0.099449					44	16	4	0	0	0	0.5493	1	4224	4224		80.997	25.493	1	1829800			16409	7060	11573	11594	18085	18085					0.047799090823332335
FLHARCYEV	9	Unmodified	_FLHARCYEV_					0	0	0		nc|ENSG00000147144|Q96HB5-2|CCDC120;nc|ENSG00000147144|Q96HB5|CCDC120;nc|ENSG00000147144|Q96HB5-5|CCDC120;nc|ENSG00000147144|Q96HB5-3|CCDC120;ENSG00000147144|ENST00000603986|CCDC120;ENST00000603906.1_1_X:48916566-48926191:+|nuORF	nc|ENSG00000147144|Q96HB5-2|CCDC120	nc|ENSG00000147144|Q96HB5-2|CCDC120	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.2766723632812	2	569.279126	1136.5437	-1.0669	-0.00060736	-3.2178	-0.0018318	-4.2847	-0.0024392	569.2771577721113	79.614	2.4603	79.633	79.233	81.693	0.018669					115	59	4	0	0	0	0.42604	1	9802	9802		64.207	7.4862	1	2642900			16410	5940	11574	11595	18086	18086					-0.01911081197340536
FLHDNMVEI	9	Oxidation (M)	_FLHDNM(Oxidation (M))VEI_		FLHDNM(1)VEI		FLHDNM(99)VEI	0	0	1		nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;LIG3|p.Q990Rfs*18|1|0.19|ENSG00000005156|chr17:35004442-35004443|-/GC|frameshift_variant;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF	nc|ENSG00000005156|P49916-4|LIG3	nc|ENSG00000005156|P49916-4|LIG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.2694091796875	2	567.268424	1132.5223	-0.33241	-0.00018856	0.50654	0.00028734	0.17413	9.8779E-05	567.2685888477146	54.913	0.7916	54.762	54.507	55.299	-0.15036					50	22	4	0	0	0	0.15388	1	6010	6010		98.582	13.666	1	2837500			16411	760	11575	11596	18087	18087		22			-0.038665110166903105
FLHGGASE	8	Unmodified	_FLHGGASE_					0	0	0			REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.19873046875	2	409.195585	816.376617	0.93872	0.00038412	-1.5938	-0.00065219	-0.65512	-0.00026807	409.19481124236717	98.93	0.93675	98.794	98.277	99.213	-0.13621					43	22	3	0	0	0	1.0472	1	12251	12251		29.842	1.5873	1	267150	+		16412	33057	11576	11597	18088	18088					-0.03891605750573035
FLHGGASE	8	Unmodified	_FLHGGASE_					0	0	0			REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	409.195585	816.376617	0.93872	0.00038412	-1.5938	-0.00065219	-0.65512	-0.00026807	409.19481124236717	98.93	0.93675	98.794	98.277	99.213	-0.13621	-0.032284	-6.8647E-05	NaN	29.842	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267150	+		16413	33057	11576	11597							-0.03891605750573035
FLHGGASE	8	Unmodified	_FLHGGASE_					0	0	0			REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	409.195585	816.376617	1.4199	0.00058102	-2.2401	-0.00091666	-0.82023	-0.00033563	409.1945835114555	98.881	0.90549	98.757	98.328	99.234	-0.12458	-0.06936	-0.00059757	NaN	29.842	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203280	+		16414	33057	11576	11597							-0.03891605750573035
FLHGGASE	8	Unmodified	_FLHGGASE_					0	0	0			REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	REV__ENST00000467008.5_1_6:16740003-16761651:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	409.195585	816.376617	-0.035191	-1.44E-05	-0.99781	-0.0004083	-1.033	-0.0004227	409.1950959585641	99.097	0.7859	98.928	98.417	99.202	-0.16862	0.10164	0.00041914	NaN	29.842	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158310	+		16415	33057	11576	11597							-0.03891605750573035
FLHPLMHSL	9	Unmodified	_FLHPLMHSL_					0	0	0		ENST00000564993.1_1_15:72498796-72499018:-|nuORF	ENST00000564993.1_1_15:72498796-72499018:-|nuORF	ENST00000564993.1_1_15:72498796-72499018:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3347778320312	2	547.794412	1093.57427	-1.7687	-0.00096886	4.1577	0.0022776	2.3891	0.0013087	547.7961337902146	29.711	0.60881	29.711	29.408	30.017	0					28	14	3	0	0	0	0.024443	1	1820	1820		26.796	7.6926	1	188940			16416	16909	11577	11598	18089	18089					0.031226971877231335
FLHSPSSL	8	Unmodified	_FLHSPSSL_					0	0	0		ENST00000370631.3_1_10:99435531-99435759:+|nuORF	ENST00000370631.3_1_10:99435531-99435759:+|nuORF	ENST00000370631.3_1_10:99435531-99435759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.2629089355469	2	444.23471	886.454868	0.063787	2.8337E-05	4.0274	0.0017891	4.0912	0.0018174	444.2364033641889	72.665	0.85757	72.665	72.252	73.109	0					35	20	2	0	0	0	0.027866	1	8865	8865		46.766	11.566	1	454570			16417	12966	11578	11599	18090	18090					0.007098268346567238
FLHTGHLTI	9	Unmodified	_FLHTGHLTI_					0	0	0		nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3039642-3048038:-|nuORF	nc|ENSG00000110619|P49589|CARS1	nc|ENSG00000110619|P49589|CARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7901611328125	2	519.790184	1037.56581	-1.1612	-0.00060359	-0.59233	-0.00030789	-1.7535	-0.00091147	519.7897718390615	80.264	0.99884	80.112	79.8	80.799	-0.15168					54	23	3	0	0	0	0.72875	1	9966	9966		44.117	1.6423	1	4966300			16418	3050	11579	11600	18091	18091					0.04853466542749629
FLHTTIQIL	9	Unmodified	_FLHTTIQIL_					0	0	0		OR4C12|p.A154T|1|0.22|ENSG00000221954|chr11:49982042-49982042|C/T|missense_variant	OR4C12|p.A154T|1|0.22|ENSG00000221954|chr11:49982042-49982042|C/T|missense_variant	OR4C12|p.A154T|1|0.22|ENSG00000221954|chr11:49982042-49982042|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3204345703125	2	543.321317	1084.62808	-1.5923	-0.00086516	-2.48	-0.0013474	-4.0723	-0.0022126	543.3198790554983	64.731	1.2899	64.469	64.083	65.372	-0.2626					71	34	3	0	0	0	0.11848	1	7601	7601		106.42	8.9425	1	10106000			16419	18915	11580	11601	18092	18092					0.08915192891095103
FLHTTIQIL	9	Unmodified	_FLHTTIQIL_					0	0	0		OR4C12|p.A154T|1|0.22|ENSG00000221954|chr11:49982042-49982042|C/T|missense_variant	OR4C12|p.A154T|1|0.22|ENSG00000221954|chr11:49982042-49982042|C/T|missense_variant	OR4C12|p.A154T|1|0.22|ENSG00000221954|chr11:49982042-49982042|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.31982421875	2	543.321317	1084.62808	-0.6523	-0.00035441	-3.5841	-0.0019473	-4.2364	-0.0023017	543.3193466176134	64.421	1.3172	64.466	64.046	65.363	0.045502					61	35	2	0	0	0	0.096521	1	7499	7499		111.65	4.6408	1	13395000			16420	18915	11580	11601	18093	18093					0.08915192891095103
FLHVAQLLD	9	Unmodified	_FLHVAQLLD_					0	0	0			REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF;REV__ENSG00000183317|ENST00000373048|EPHA10	REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2842407226562	2	528.297842	1054.58113	0.68306	0.00036086	-1.4684	-0.00077575	-0.78534	-0.00041489	528.2973428155944	87.137	0.21152	87.158	87.094	87.306	0.021263					6	4	2	0	0	0	0.020004	1	10876	10876		119.56	16.783	1	154120	+		16421	32625;27565	11581	11602	18094	18094					0.056023333399252806
FLIEGTISRA	10	Unmodified	_FLIEGTISRA_					0	0	0		TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.813720703125	2	553.813856	1105.61316	0.072634	4.0226E-05	-1.7264	-0.00095612	-1.6538	-0.0009159	553.8123988132551	59.63	0.86656	59.382	58.97	59.836	-0.24842					49	21	4	0	0	0	0.26927	1	6585	6585		112.41	11.158	1	1354500			16422	3329	11582	11603	18095	18095					0.06457701023100526
FLIEGTISRA	10	Unmodified	_FLIEGTISRA_					0	0	0		TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.813856	1105.61316	1.0074	0.00055792	-3.3158	-0.0018363	-2.3084	-0.0012784	553.8120453631338	59.329	0.8066	59.329	59.108	59.914	0	-0.0084291	-0.0001144	NaN	112.41	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1356700			16423	3329	11582	11603							0.06457701023100526
FLIEGTISRA	10	Unmodified	_FLIEGTISRA_					0	0	0		TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.813856	1105.61316	0.54503	0.00030185	-4.194	-0.0023227	-3.6489	-0.0020208	553.8113396969687	59.552	0.76689	59.352	59.028	59.795	-0.20016	0.014526	-0.0010871	NaN	112.41	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1205100			16424	3329	11582	11603							0.06457701023100526
FLIEGTISRA	10	Unmodified	_FLIEGTISRA_					0	0	0		TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.813856	1105.61316	0.16357	9.0586E-05	-3.2797	-0.0018164	-3.1162	-0.0017258	553.8115779498315	59.201	1.0617	59.287	58.957	60.018	0.085682	-0.050746	-7.446E-05	NaN	112.41	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995260			16425	3329	11582	11603							0.06457701023100526
FLIETNLLQ	9	Unmodified	_FLIETNLLQ_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.810302734375	2	545.810782	1089.60701	-0.93774	-0.00051183	-0.17789	-9.7097E-05	-1.1156	-0.00060893	545.8105778063236	53.813	1.1351	53.666	53.31	54.445	-0.14723					87	31	4	0	0	0	0.45795	1	5811	5811		62.107	3.3255	1	4977300			16426	7759	11583	11604	18096	18096					0.0657918279155183
FLIFAKLR	8	Unmodified	_FLIFAKLR_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.3266906738281	2	504.323663	1006.63277	4.7418	0.0023914	1.9331	0.00097491	6.6749	0.0033663	504.3246561985497	17.917	1.1535	17.977	17.786	18.939	0.06036					67	24	5	0	0	0	1.0572	1	222	222		28.254	1.4582	1	2544500	+		16427	27726	11584	11605	18097	18097					0.12972121824509486
FLIGKNFLKGT	11	Unmodified	_FLIGKNFLKGT_					0	0	0		NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant;nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.3695678710938	2	619.368798	1236.72304	0.10969	6.7938E-05	3.1492	0.0019505	3.2589	0.0020184	619.3707577954212	100.03	0.81097	100.04	99.701	100.51	0.010109					50	20	3	0	0	0	1.0344	1	12772	12772		29.17	3.596	1	871680			16428	2443	11585	11606	18098	18098					0.11415126362248884
FLIGKNFLKGT	11	Unmodified	_FLIGKNFLKGT_					0	0	0		NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant;nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.3706665039062	2	619.368798	1236.72304	0.41006	0.00025398	2.8289	0.0017521	3.2389	0.0020061	619.3705610213385	100.17	0.77786	100.03	99.755	100.53	-0.13364					55	22	3	0	0	0	1.0521	1	12460	12460		24.519	0.99649	1	1373000			16429	2443	11585	11606	18099	18099					0.11415126362248884
FLIHAPLGPI	10	Unmodified	_FLIHAPLGPI_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7770385742188	2	539.326402	1076.63825	-0.94276	-0.00050845	0.81619	0.00044019	-0.12657	-6.8263E-05	539.3266917284939	57.592	0.58144	57.414	57.133	57.714	-0.17775					36	14	3	0	0	0	0.03519	1	6265	6265		12.959	0	1	1051300	+		16430	23011	11586	11607	18100	18100					0.10299800616326138
FLIHMFHY	8	Unmodified	_FLIHMFHY_					0	0	0		ASPA|p.Q138H|1|0.1|ENSG00000108381|chr17:3481780-3481780|G/C|missense_variant	ASPA|p.Q138H|1|0.1|ENSG00000108381|chr17:3481780-3481780|G/C|missense_variant	ASPA|p.Q138H|1|0.1|ENSG00000108381|chr17:3481780-3481780|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7864990234375	2	554.275855	1106.53716	-0.86633	-0.00048018	-0.5151	-0.00028551	-1.3814	-0.00076569	554.2751467586116	55.44	0.7844	55.294	54.761	55.546	-0.14609					39	21	2	0	0	0	0.027866	1	5994	5994		33.493	14.133	1	256630			16431	140	11587	11608	18101	18101					-0.011849743580341965
FLIILVSPI	9	Unmodified	_FLIILVSPI_					0	0	0			REV__ENSG00000183150|ENST00000651487|GPR19	REV__ENSG00000183150|ENST00000651487|GPR19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.8332214355469	2	507.833529	1013.6525	0.011049	5.6113E-06	-0.44419	-0.00022558	-0.43314	-0.00021996	507.83330022638233	106.87	0.43044	106.86	106.67	107.1	-0.0034866					20	13	2	0	0	0	0.97516	1	13694	13694		25.45	0	1	201400	+		16432	27545	11588	11609	18102	18102					0.1462245304460339
FLIKHRDAI	9	Unmodified	_FLIKHRDAI_					0	0	0			REV__ENSG00000111817|ENST00000644252|DSE	REV__ENSG00000111817|ENST00000644252|DSE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2659301757812	2	556.832383	1111.65021	-0.20138	-0.00011213	0.79428	0.00044228	0.5929	0.00033015	556.8325117810932	52.682	0.47298	52.423	52.21	52.683	-0.25838					16	11	2	0	0	0	0.024506	1	5507	5507		38.806	0	1	217840	+		16433	21948	11589	11610	18103	18103					0.09885417359510029
FLIKNETD	8	Unmodified	_FLIKNETD_					0	0	0			REV__ENSG00000077420|ENST00000376236|APBB1IP	REV__ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.29229736328125	2	490.258382	978.502212	-0.36742	-0.00018013	3.1032	0.0015214	2.7358	0.0013412	490.2598332267255	66.072	0.57319	66.102	65.624	66.197	0.030106					20	14	2	0	0	0	0.027866	1	7785	7785		50.025	12.865	1	150540	+		16434	20591	11590	11611	18104	18104					0.012100613149868877
FLIKVQMSK	9	Unmodified	_FLIKVQMSK_					0	0	0			REV__ENST00000523968.1_1_8:29043965-29102869:-|nuORF	REV__ENST00000523968.1_1_8:29043965-29102869:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3274536132812	2	547.325545	1092.63654	-1.0326	-0.00056517	4.1391	0.0022654	3.1065	0.0017003	547.3277245964109	57.279	0.85739	57.375	56.684	57.541	0.095306					65	23	4	0	0	0	0.6504	1	6361	6361		49.442	5.3247	1	4271600	+		16435	34366	11591	11612	18105	18105					0.09392423536064598
FLILDLEGCT	10	Unmodified	_FLILDLEGCT_					0	0	0			REV__ENST00000374279.3_1_9:114696562-114696673:+|nuORF	REV__ENST00000374279.3_1_9:114696562-114696673:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3233642578125	2	562.288825	1122.5631	-0.19	-0.00010684	-0.63625	-0.00035775	-0.82625	-0.00046459	562.2877422902383	69.839	0.29001	69.617	69.348	69.638	-0.22245					12	6	2	0	0	0	0.03519	1	8081	8081		45.952	6.9305	1	524460	+		16436	31290	11592	11613	18106	18106					0.006718303029174422
FLILFHMK	8	Unmodified	_FLILFHMK_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2852172851562	2	524.804248	1047.59394	-0.60864	-0.00031941	-0.25014	-0.00013127	-0.85878	-0.00045069	524.805665760608	66.403	0.50412	66.179	65.864	66.368	-0.22374					15	12	2	0	0	0	0.027866	1	7610	7610		46.766	2.2354	1	75551			16437	971	11593	11614	18107	18107					0.07205073198474565
FLILFHMK	8	Unmodified	_FLILFHMK_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.804248	1047.59394	0.016538	8.6792E-06	3.6662	0.0019241	3.6828	0.0019327	524.8054112997976	65.844	0.67902	65.844	65.426	66.105	0	-0.11704	0.00052684	NaN	46.766	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544250			16438	971	11593	11614							0.07205073198474565
FLILFHMK	8	Unmodified	_FLILFHMK_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.804248	1047.59394	-0.3254	-0.00017077	3.8127	0.0020009	3.4873	0.0018302	524.8055606572537	66.192	0.46127	65.913	65.714	66.176	-0.27859	-0.048059	0.0006806	NaN	46.766	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621880			16439	971	11593	11614							0.07205073198474565
FLILFHMK	8	Unmodified	_FLILFHMK_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.804248	1047.59394	-0.03624	-1.9019E-05	3.4582	0.0018149	3.422	0.0017959	524.8054328057173	65.879	0.49702	65.909	65.624	66.121	0.030106	-0.052605	0.00030854	NaN	46.766	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642940			16440	971	11593	11614							0.07205073198474565
FLILLGQEL	9	Unmodified	_FLILLGQEL_					0	0	0			REV__ENST00000340020.10_1_1:222849521-222860361:-|nuORF	REV__ENST00000340020.10_1_1:222849521-222860361:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2982788085938	2	523.318243	1044.62193	-0.030869	-1.6154E-05	0.88829	0.00046486	0.85742	0.0004487	523.3189584615961	86.777	0.63822	86.798	86.33	86.968	0.021263					19	14	2	0	0	0	0.022083	1	10846	10846		111.65	5.2331	1	143270	+		16441	30608	11594	11615	18108	18108					0.10140674659578508
FLILMILDL	9	Unmodified	_FLILMILDL_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2896118164062	2	545.832672	1089.65079	-1.1096	-0.00060565	-3.258	-0.0017783	-4.3676	-0.002384	545.8307969561969	51.315	0.88166	51.165	50.861	51.743	-0.14916					38	24	2	0	0	0	0.024517	1	5357	5357		19.36	1.0356	1	224070	+		16442	20528	11595	11616	18109	18109					0.10955075964352545
FLILYIFN	8	Unmodified	_FLILYIFN_					0	0	0		ENSG00000221937|ENST00000408947|TAS2R40;ENSG00000236398|ENST00000446620|TAS2R39	ENSG00000221937|ENST00000408947|TAS2R40	ENSG00000221937|ENST00000408947|TAS2R40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2590942382812	2	521.802229	1041.5899	-0.88087	-0.00045964	-3.309	-0.0017266	-4.1899	-0.0021863	521.8002738002326	84.414	1.212	84.341	83.917	85.129	-0.072769					47	28	2	0	0	0	0.027866	1	10625	10625		49.211	0	1	608170			16443	10623	11596	11617	18110	18110					0.07077306976430009
FLILYIPY	8	Unmodified	_FLILYIPY_					0	0	0		ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2894287109375	2	521.304604	1040.59466	0.58827	0.00030667	4.361	0.0022734	4.9493	0.0025801	521.3060016706623	62.924	0.39671	62.978	62.801	63.198	0.054104					14	9	2	0	0	0	0.027866	1	7238	7238		33.493	0	1	92187			16444	4238	11597	11618	18111	18111					0.07598191119200237
FLIMQNKVKLF	11	Oxidation (M)	_FLIM(Oxidation (M))QNKVKLF_		FLIM(1)QNKVKLF		FLIM(62)QNKVKLF	0	0	1			REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.27337646484375	3	466.272219	1395.79483	0.4417	0.00020595	2.2273	0.0010385	2.669	0.0012445	466.27320185138944	67.213	0.91825	66.964	66.749	67.667	-0.2484					59	21	4	0	0	0	0.73399	1	7732	7732		61.691	24.183	1	3601200	+		16445	23095	11598	11619	18112	18112		688			0.11276297724475626
FLIMQNKVKLF	11	Oxidation (M)	_FLIM(Oxidation (M))QNKVKLF_		FLIM(1)QNKVKLF		FLIM(46)QNKVKLF	0	0	1			REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.6078186035156	3	466.272219	1395.79483	-0.30233	-0.00014097	3.0042	0.0014008	2.7019	0.0012598	466.2735273795746	67.219	0.86321	66.995	66.742	67.605	-0.22374					59	20	4	0	0	0	0.95664	1	7721	7721		46.457	8.8569	1	3229800	+		16446	23095	11598	11619	18113	18113		688			0.11276297724475626
FLIMQNKVKLF	11	Oxidation (M)	_FLIM(Oxidation (M))QNKVKLF_		FLIM(1)QNKVKLF		FLIM(46)QNKVKLF	0	0	1			REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.6078186035156	3	466.272219	1395.79483	-0.30233	-0.00014097	3.0042	0.0014008	2.7019	0.0012598	466.2735273795746	67.219	0.86321	66.995	66.742	67.605	-0.22374					59	20	4	0	0	0	0.024753	1	7721	7721		46.457	8.9486	1	3229800	+		16447	23095	11598	11619	18114	18114		688			0.11276297724475626
FLINEFGPL	9	Unmodified	_FLINEFGPL_					0	0	0			REV__ENSG00000121316|ENST00000240617|PLBD1	REV__ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2852172851562	2	525.286943	1048.55933	-0.40556	-0.00021303	-3.9199	-0.0020591	-4.3255	-0.0022721	525.2849906305727	66.167	0.78584	65.926	65.625	66.41	-0.24145					68	19	6	0	0	0	0.08613	1	7565	7565		115.46	5.3391	1	4026100	+		16448	22590	11599	11620	18115	18115					0.03699528591369017
FLINTNSEL	9	Unmodified	_FLINTNSEL_					0	0	0		nc|ENSG00000065989|P27815-5|PDE4A;ENST00000590407.1_1_19:10569976-10577573:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A;ENST00000589073.1_1_19:10571682-10572428:+|nuORF;nc|ENSG00000184588|Q07343-4|PDE4B;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000285188|Q08493-2|PDE4C;ENSG00000105650|ENST00000262805|PDE4C;nc|ENSG00000285188|Q08493|PDE4C;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	nc|ENSG00000065989|P27815-5|PDE4A;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-6|PDE4D	nc|ENSG00000065989|P27815-5|PDE4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.77734375	2	525.776939	1049.53933	0.13667	7.1859E-05	-0.16667	-8.7631E-05	-0.029998	-1.5772E-05	525.7768088884322	73.806	1.3608	73.806	73.553	74.914	0					56	32	2	0	0	0	0.015512	1	9024	9024		159.28	24.465	1	2056800			16449	1326;18183;9354	11600	11621	18116	18116					0.016537328607682866
FLINTNSEL	9	Unmodified	_FLINTNSEL_					0	0	0		nc|ENSG00000065989|P27815-5|PDE4A;ENST00000590407.1_1_19:10569976-10577573:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A;ENST00000589073.1_1_19:10571682-10572428:+|nuORF;nc|ENSG00000184588|Q07343-4|PDE4B;nc|ENSG00000184588|Q07343-2|PDE4B;nc|ENSG00000285188|Q08493-2|PDE4C;ENSG00000105650|ENST00000262805|PDE4C;nc|ENSG00000285188|Q08493|PDE4C;nc|ENSG00000184588|Q07343-3|PDE4B;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	nc|ENSG00000065989|P27815-5|PDE4A;ENSG00000184588|ENST00000341517|PDE4B;nc|ENSG00000113448|Q08499-6|PDE4D	nc|ENSG00000065989|P27815-5|PDE4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.7766723632812	2	525.776939	1049.53933	-0.15363	-8.0773E-05	0.10498	5.5197E-05	-0.048644	-2.5576E-05	525.7769227381445	74.083	1.1126	73.821	73.585	74.698	-0.26279					56	26	3	0	0	0	0.025498	1	9028	9028		145.16	10.345	1	1898500			16450	1326;18183;9354	11600	11621	18117	18117					0.016537328607682866
FLIPAVELI	9	Unmodified	_FLIPAVELI_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8154296875	2	507.815336	1013.61612	-0.3235	-0.00016428	0.8229	0.00041788	0.4994	0.0002536	507.81561002100875	103.92	1.1172	103.92	103.56	104.68	0					75	27	5	0	0	0	0.15889	2	13335	13335;13346		97.473	8.8298	1	1065300			16451	1862	11601	11622	18118;18119	18118					0.1098557614790252
FLIPAVELI	9	Unmodified	_FLIPAVELI_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.8155517578125	2	507.815336	1013.61612	-0.11091	-5.6321E-05	0.70363	0.00035731	0.59272	0.00030099	507.815517074982	103.91	1.1996	103.91	103.48	104.68	0.0031357					75	29	4	0	0	0	0.12366	3	13284	13284;13296;13305		105.27	21.982	1	969680			16452	1862	11601	11622	18120;18121;18122	18120					0.1098557614790252
FLIPAVELI	9	Unmodified	_FLIPAVELI_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.8152770996094	2	507.815336	1013.61612	0.10536	5.3503E-05	0.35352	0.00017952	0.45888	0.00023303	507.81538695748867	103.96	1.2849	103.96	103.44	104.73	-0.0032196					76	31	4	0	0	0	0.40179	2	13264	13264;13287		65.803	9.3694	1	1138000			16453	1862	11601	11622	18123;18124	18123					0.1098557614790252
FLIPAVELI	9	Unmodified	_FLIPAVELI_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.815336	1013.61612	0.27097	0.0001376	0.43762	0.00022223	0.70859	0.00035983	507.8153787235469	103.71	0.63972	103.58	103.23	103.87	-0.12724	-0.18921	-0.00019517	NaN	105.27	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133620			16454	1862	11601	11622							0.1098557614790252
FLIPAVELI	9	Unmodified	_FLIPAVELI_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	507.815336	1013.61612	0.18722	9.5075E-05	0.41141	0.00020892	0.59863	0.00030399	507.81521355892863	103.82	0.65723	103.65	103.28	103.94	-0.16791	-0.11973	-0.0002218	NaN	105.27	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145730			16455	1862	11601	11622							0.1098557614790252
FLIPLLCMS	9	Unmodified	_FLIPLLCMS_					0	0	0			REV__ENST00000609104.5_1_10:11531199-11535127:-|nuORF	REV__ENST00000609104.5_1_10:11531199-11535127:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.780517578125	2	518.782124	1035.5497	-0.14836	-7.6966E-05	-2.973	-0.0015423	-3.1213	-0.0016193	518.7804261533511	25.234	0.61601	25.314	25.006	25.622	0.08009					43	14	4	0	0	0	0.64155	1	1123	1123		50.025	7.5501	1	1418400	+		16456	35976	11602	11623	18125	18125					0.03334300989990879
FLIPQLLWG	9	Unmodified	_FLIPQLLWG_					0	0	0		ENST00000558848.1_1_15:90760965-90763201:+|nuORF	ENST00000558848.1_1_15:90760965-90763201:+|nuORF	ENST00000558848.1_1_15:90760965-90763201:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.2979125976562	2	543.820953	1085.62735	-0.89996	-0.00048942	-3.8749	-0.0021073	-4.7749	-0.0025967	543.8185581191524	63.255	0.64172	63.013	62.416	63.058	-0.24218					27	15	3	0	0	0	0.024487	1	7284	7284		24.203	10.066	1	3528900			16457	16760	11603	11624	18126	18126					0.08796398242020587
FLIPQLLWG	9	Unmodified	_FLIPQLLWG_					0	0	0		ENST00000558848.1_1_15:90760965-90763201:+|nuORF	ENST00000558848.1_1_15:90760965-90763201:+|nuORF	ENST00000558848.1_1_15:90760965-90763201:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.820953	1085.62735	-1.2303	-0.00066909	-4.0181	-0.0021851	-5.2484	-0.0028542	543.8188006196283	63.036	0.36092	63.036	62.729	63.09	0	0.011241	-6.9034E-05	NaN	37.159	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4365400			16458	16760	11603	11624							0.08796398242020587
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.334228515625	2	540.334227	1078.6539	-0.78638	-0.00042491	0.23741	0.00012828	-0.54897	-0.00029663	540.3343015278709	79.249	4.3084	79.249	78.7	83.008	0					307	103	5	0	0	0	0.062871	11	9843	9794;9806;9818;9831;9843;9854;9866;9878;9890;9902;9914		123.99	52.611	1	14515000			16459	14054	11604	11625	18127;18128;18129;18130;18131;18132;18133;18134;18135;18136;18137	18131					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.3343505859375	2	540.334227	1078.6539	-1.4044	-0.00075882	0.7957	0.00042995	-0.60865	-0.00032887	540.3345888929591	79.399	3.924	79.227	78.653	82.577	-0.17226					284	94	5	0	0	0	0.10076	10	9813	9790;9801;9813;9826;9837;9850;9873;9885;9897;9909		110.34	49.365	1	13155000			16460	14054	11604	11625	18138;18139;18140;18141;18142;18143;18144;18145;18146;18147	18140					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.333984375	2	540.334227	1078.6539	-0.87704	-0.0004739	0.15812	8.5435E-05	-0.71893	-0.00038846	540.3342730549497	79.235	4.4308	79.254	78.777	83.207	0.018677					270	106	5	0	0	0	0.14199	10	9760	9725;9736;9748;9760;9772;9785;9797;9808;9820;9832		101.21	41.093	1	15070000			16461	14054	11604	11625	18148;18149;18150;18151;18152;18153;18154;18155;18156;18157	18151					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.33447265625	2	540.334227	1078.6539	0.13153	7.1072E-05	-0.48254	-0.00026073	-0.35101	-0.00018966	540.3338562853816	79.249	1.838	79.003	78.522	80.36	-0.2465					108	43	4	0	0	0	0.10076	3	9448	9448;9460;9471		110.34	30.625	1	2996900			16462	14054	11604	11625	18158;18159;18160	18158					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3340454101562	2	540.334227	1078.6539	-0.062228	-3.3624E-05	-0.22517	-0.00012167	-0.2874	-0.00015529	540.3339729990952	79.221	1.6284	79.002	78.532	80.16	-0.21923					105	38	4	0	0	0	0.15889	4	9473	9461;9473;9486;9505		97.473	31.575	1	2744700			16463	14054	11604	11625	18161;18162;18163;18164	18162					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	ENST00000430069.5_1_3:176771676-176782752:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.3340454101562	2	540.334227	1078.6539	-0.75173	-0.00040619	0.32654	0.00017644	-0.42519	-0.00022974	540.3342835558058	79.135	2.0083	78.985	78.519	80.528	-0.15051					119	47	5	0	0	0	0.14199	4	9433	9424;9433;9445;9457		101.21	40.918	1	2825600			16464	14054	11604	11625	18165;18166;18167;18168	18166					0.1177208713336313
FLISRLIKV	9	Unmodified	_FLISRLIKV_					0	0	0		ENST00000531486.1_1_17:45681241-45696545:+|nuORF	ENST00000531486.1_1_17:45681241-45696545:+|nuORF	ENST00000531486.1_1_17:45681241-45696545:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8223876953125	2	544.863152	1087.71175	0.86746	0.00047265	3.6537	0.0019908	4.5212	0.0024634	544.8639908374747	63.567	0.28466	63.621	63.483	63.768	0.054104					10	7	2	0	0	0	0.024535	1	7349	7349		33.516	1.5607	1	108110			16465	16262	11605	11626	18169	18169					0.1714034905880908
FLISRLLAR	9	Unmodified	_FLISRLLAR_					0	0	0		ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	ENST00000471799.1_1_22:26886916-26887635:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.8220825195312	2	544.850576	1087.6866	-0.56709	-0.00030898	-1.3022	-0.00070951	-1.8693	-0.0010185	545.3526617945445	63.802	0.14522	63.551	63.444	63.59	-0.25141					5	3	2	0	0	0	0.024541	1	7433	7433		26.796	7.4361	1	120170			16466	14969	11606	11627	18170	18170					0.1462629425623163
FLITPPLFP	9	Unmodified	_FLITPPLFP_					0	0	0		ENST00000178640.9_1_15:67835333-67835654:+|nuORF	ENST00000178640.9_1_15:67835333-67835654:+|nuORF	ENST00000178640.9_1_15:67835333-67835654:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.8070678710938	2	522.810054	1043.60555	-0.16969	-8.8715E-05	-3.8797	-0.0020283	-4.0494	-0.002117	522.8074784054922	72.227	0.59268	72.227	71.94	72.533	0					49	14	5	0	0	0	0.24299	1	8790	8790		83.287	6.513	1	1838800			16467	11121	11607	11628	18171	18171					0.08549593493467
FLIVGCADDSV	11	Unmodified	_FLIVGCADDSV_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7378540039062	2	569.776082	1137.53761	0.17716	0.00010094	0.81694	0.00046548	0.99411	0.00056642	569.7767236408065	57.788	0.45318	57.598	57.259	57.712	-0.19018					20	11	2	0	0	0	0.024747	1	6324	6324		39.253	8.7492	1	239470			16468	7554	11608	11629	18172	18172					-0.025656442195213458
FLIVVICKK	9	Unmodified	_FLIVVICKK_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8422241210938	2	531.840831	1061.66711	-1.2085	-0.00064275	4.0133	0.0021344	2.8048	0.0014917	531.8429371334788	51.191	1.3698	51.278	50.785	52.155	0.087009					109	37	5	0	0	0	0.75282	1	5339	5339		42.474	8.9589	1	8850700			16469	4778	11609	11630	18173	18173					0.1387420192108948
FLIVVVFLI	9	Unmodified	_FLIVVVFLI_					0	0	0		ENSG00000124102|ENST00000243924|PI3	ENSG00000124102|ENST00000243924|PI3	ENSG00000124102|ENST00000243924|PI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2926635742188	2	531.851722	1061.68889	-0.60225	-0.00032031	-3.3697	-0.0017922	-3.9719	-0.0021125	531.8497707900357	65.915	0.12415	65.664	65.561	65.685	-0.25112					4	2	2	0	0	0	0.024475	1	7530	7530		21.702	0	1	52262			16470	4009	11610	11631	18174	18174					0.16051329941319636
FLIWKFILN	9	Unmodified	_FLIWKFILN_					0	0	0			REV__ENSG00000152254|ENST00000375363|G6PC2	REV__ENSG00000152254|ENST00000375363|G6PC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.3585205078125	2	597.357702	1192.70085	-0.034733	-2.0748E-05	1.4256	0.00085158	1.3909	0.00083084	597.3583204343577	98.637	1.8036	98.633	98.096	99.899	-0.0038834					117	41	4	0	0	0	0.90698	1	12631	12631		31.955	5.1588	1	2975900	+		16471	24829	11611	11632	18175	18175					0.11220946684511546
FLKDHFIL	8	Unmodified	_FLKDHFIL_					0	0	0		ENST00000394684.8_1_4:108832202-108832376:+|nuORF	ENST00000394684.8_1_4:108832202-108832376:+|nuORF	ENST00000394684.8_1_4:108832202-108832376:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7955322265625	2	516.797478	1031.5804	-0.80904	-0.00041811	-3.0132	-0.0015572	-3.8222	-0.0019753	516.795719983409	64.637	0.63634	64.637	64.347	64.983	0					50	16	4	0	0	0	0.65272	1	7620	7620		71.378	2.5911	1	4621200			16472	13495	11612	11633	18176	18176					0.06587538690882866
FLKDLVASV	9	Unmodified	_FLKDLVASV_					0	0	0		ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.29547119140625	2	496.294768	990.574983	0.19791	9.822E-05	0.96393	0.00047839	1.1618	0.00057661	496.2950366507731	66.621	0.57649	66.621	66.434	67.01	0					29	14	3	0	0	0	0.67687	1	7940	7940		47.657	5.2612	1	1348300			16473	8571	11613	11634	18177	18177					0.07931815108429419
FLKDLVASV	9	Unmodified	_FLKDLVASV_					0	0	0		ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7968444824219	2	496.294768	990.574983	-0.42586	-0.00021135	1.6409	0.00081436	1.215	0.00060301	496.29540441561693	66.971	0.58054	66.689	66.456	67.037	-0.28149					45	15	4	0	0	0	0.5973	1	7941	7941		52.937	12.159	1	1464700			16474	8571	11613	11634	18178	18178					0.07931815108429419
FLKDLVASV	9	Unmodified	_FLKDLVASV_					0	0	0		ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2957763671875	2	496.294768	990.574983	-0.20472	-0.0001016	1.2389	0.00061488	1.0342	0.00051328	496.2952352590917	66.64	0.66745	66.67	66.491	67.159	0.030106					45	15	4	0	0	0	0.6238	1	7866	7866		51.193	3.2771	1	1771200			16475	8571	11613	11634	18179	18179					0.07931815108429419
FLKDLVASV	9	Unmodified	_FLKDLVASV_					0	0	0		ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.294768	990.574983	-0.096232	-4.7759E-05	1.4142	0.00070184	1.3179	0.00065408	496.2953483842934	66.996	0.48917	66.747	66.63	67.12	-0.24839	0.067128	-1.6865E-05	NaN	52.937	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	975170			16476	8571	11613	11634							0.07931815108429419
FLKDLVASV	9	Unmodified	_FLKDLVASV_					0	0	0		ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	496.294768	990.574983	-0.55176	-0.00027383	2.392	0.0011871	1.8402	0.0009133	496.29576749336945	66.918	0.48649	66.673	66.545	67.031	-0.24517	-0.007253	0.00095373	NaN	52.937	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130600			16477	8571	11613	11634							0.07931815108429419
FLKHKQCCT	9	Unmodified	_FLKHKQCCT_					0	0	0			REV__ENSG00000165197|ENST00000297904|VEGFD	REV__ENSG00000165197|ENST00000297904|VEGFD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7862548828125	2	554.275529	1106.53651	-1.1351	-0.00062915	3.6696	0.002034	2.5345	0.0014048	554.7798568305369	56.132	0.36943	55.917	55.709	56.078	-0.21551					15	9	2	0	0	0	0.024523	1	6061	6061		21.96	1.013	1	159840	+		16478	25856	11614	11635	18180	18180					-0.012501370694053549
FLKIFKPE	8	Unmodified	_FLKIFKPE_					0	0	0		ENSG00000176920|ENST00000425340|FUT2;ENSG00000174951|ENST00000645652|FUT1	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2870178222656	2	511.307678	1020.6008	0.12084	6.1788E-05	-0.38425	-0.00019647	-0.2634	-0.00013468	511.3073014901788	56.593	0.61715	56.39	56.092	56.71	-0.20209					35	15	3	0	0	0	0.027866	1	6120	6120		25.45	0	1	499860			16479	8685	11615	11636	18181	18181					0.09132709350706136
FLKITEKK	8	Unmodified	_FLKITEKK_					0	0	0			REV__ENSG00000102802|ENST00000380482|MEDAG	REV__ENSG00000102802|ENST00000380482|MEDAG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2321472167969	2	503.81841	1005.62227	-0.92813	-0.00046761	-0.89304	-0.00044993	-1.8212	-0.00091754	503.8182668578471	44.551	0.44225	44.307	44.115	44.557	-0.2444					18	11	2	0	0	0	0.027866	1	4182	4182		25.574	2.0514	1	208100	+		16480	21328	11616	11637	18182	18182					0.11968094379415106
FLKKAIQDPAF	11	Unmodified	_FLKKAIQDPAF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	639.3629150390625	2	639.366256	1276.71796	-1.4828	-0.00094804	-3.3355	-0.0021326	-4.8183	-0.0030806	639.3639199334042	110.13	0.48322	110	109.83	110.31	-0.12525					62	19	4	0	0	0	1.0521	1	13546	13546		24.519	0.99649	1	504380			16481	1825	11617	11638	18183	18183					0.09066822499653426
FLKKEMKP	8	Unmodified	_FLKKEMKP_					0	0	0		ENST00000493667.1_1_11:33891499-33891964:-|nuORF;tr|A0A1P7U1U3|A0A1P7U1U3_EBVB9A73proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=A73PE=4SV=1	ENST00000493667.1_1_11:33891499-33891964:-|nuORF	ENST00000493667.1_1_11:33891499-33891964:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8431396484375	2	510.799163	1019.58377	-0.48576	-0.00024812	-3.6052	-0.0018415	-4.091	-0.0020897	510.79719540143975	75.601	0.68295	75.357	75.116	75.799	-0.24455					43	18	3	0	0	0	0.027866	1	9307	9307		68.485	2.6815	1	416150			16482	15510	11618	11639	18184	18184					0.07476465473246208
FLKKKNKD	8	Unmodified	_FLKKKNKD_					0	0	0			REV__nc|ENSG00000130703|Q9H1P3-2|OSBPL2	REV__nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2908630371094	2	510.813659	1019.61277	0.22806	0.00011649	-0.2347	-0.00011989	-0.0066454	-3.3946E-06	510.81319224912284	57.69	0.64673	57.515	56.999	57.646	-0.1749					25	16	2	0	0	0	0.027866	1	6471	6471		53.351	5.4358	1	552240	+		16483	23138	11619	11640	18185	18185					0.10374326093892705
FLKKKVVVK	9	Unmodified	_FLKKKVVVK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8208618164062	2	544.881345	1087.74814	0.16601	9.0454E-05	2.0301	0.0011062	2.1961	0.0011966	544.8843578226187	63.541	0.21946	63.541	63.447	63.666	0					9	5	2	0	0	0	0.024541	1	7439	7439		19.36	6.4008	1	150840			16484	7839	11620	11641	18186	18186					0.2077722595549858
FLKKSKKKEKV	11	Unmodified	_FLKKSKKKEKV_					0	0	0		ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.2374267578125	3	454.965895	1361.87586	-0.1358	-6.1786E-05	3.9952	0.0018177	3.8594	0.0017559	454.96754418678574	43.414	0.91822	43.302	43.034	43.953	-0.11253					52	24	3	0	0	0	0.024789	1	3997	3997		21.032	8.5994	1	375490			16485	1554	11621	11642	18187	18187					0.20939321758851293
FLKKSKKKEKV	11	Unmodified	_FLKKSKKKEKV_					0	0	0		ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2369689941406	3	454.965895	1361.87586	-0.76192	-0.00034665	4.2627	0.0019394	3.5008	0.0015927	455.30215772973605	43.605	0.92043	43.368	43.061	43.982	-0.23736					52	24	3	0	0	0	0.024809	1	4003	4003		12.433	0	1	517600			16486	1554	11621	11642	18188	18188					0.20939321758851293
FLKKSKKKEKV	11	Unmodified	_FLKKSKKKEKV_					0	0	0		ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.23699951171875	3	454.965895	1361.87586	-0.85395	-0.00038852	4.0697	0.0018516	3.2158	0.0014631	454.967621112789	43.58	0.93569	43.361	43.104	44.04	-0.21939					56	25	3	0	0	0	0.024757	1	3972	3972		25.892	16.246	1	531340			16487	1554	11621	11642	18189	18189					0.20939321758851293
FLKLLRFYI	9	Unmodified	_FLKLLRFYI_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENST00000359944.10_1_3:179322640-179341825:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9229736328125	3	404.921627	1211.74305	-0.22601	-9.1516E-05	2.5065	0.0010149	2.2804	0.0009234	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	0.99726	1	1350	1350		20.947	0.91646	1	42722000			16488	5025	11622	11643	18190	18190					0.14564922092904453
FLKLSIAVSI	10	Unmodified	_FLKLSIAVSI_					0	0	0		ENST00000382159.7_1_19:2514614-2514812:-|nuORF	ENST00000382159.7_1_19:2514614-2514812:-|nuORF	ENST00000382159.7_1_19:2514614-2514812:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2578735351562	2	545.847167	1089.67978	0.49465	0.00027	-0.95877	-0.00052334	-0.46413	-0.00025334	545.846345371822	59.534	0.36433	59.337	59.173	59.537	-0.19742					14	8	2	0	0	0	0.03519	1	6607	6607		65.465	12.114	1	156890			16489	13358	11623	11644	18191	18191					0.13852936584999043
FLKMATKKL	9	Unmodified	_FLKMATKKL_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.3340454101562	2	540.335913	1078.65727	-1.4044	-0.00075882	-2.3235	-0.0012555	-3.7278	-0.0020143	540.3345888929591	79.399	3.924	79.227	78.653	82.577	-0.17226					284	94	5	0	0	0	0.22902	2	9778	9778;9862		85.161	11.186	1	13155000	+		16490	27693	11624	11645	18192;18193	18192					0.1210901391571042
FLKMATKKL	9	Unmodified	_FLKMATKKL_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.33447265625	2	540.335913	1078.65727	0.13153	7.1072E-05	-3.6017	-0.0019461	-3.4702	-0.0018751	540.3338562853816	79.249	1.838	79.003	78.522	80.36	-0.2465					108	43	4	0	0	0	0.16638	2	9435	9435;9484		95.815	29.386	1	2996900	+		16491	27693	11624	11645	18194;18195	18194					0.1210901391571042
FLKMATKKL	9	Unmodified	_FLKMATKKL_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3341064453125	2	540.335913	1078.65727	-0.062228	-3.3624E-05	-3.3444	-0.0018071	-3.4066	-0.0018407	540.3339729990952	79.221	1.6284	79.002	78.532	80.16	-0.21923					105	38	4	0	0	0	0.19099	1	9451	9451		90.37	1.7269	1	2744700	+		16492	27693	11624	11645	18196	18196					0.1210901391571042
FLKMATKKL	9	Unmodified	_FLKMATKKL_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.3327026367188	2	540.335913	1078.65727	-0.75173	-0.00040619	-2.7926	-0.001509	-3.5444	-0.0019152	540.3342835558058	79.135	2.0083	78.985	78.519	80.528	-0.15051					119	47	5	0	0	0	0.33603	1	9472	9472		70.816	15.312	1	2825600	+		16493	27693	11624	11645	18197	18197					0.1210901391571042
FLKQKVTN	8	Unmodified	_FLKQKVTN_					0	0	0			REV__ENSG00000168002|ENST00000301788|POLR2G	REV__ENSG00000168002|ENST00000301788|POLR2G	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2922668457031	2	489.292559	976.570566	0.3723	0.00018216	0.4365	0.00021358	0.80881	0.00039574	489.29267255679713	66.165	0.55888	66.165	65.875	66.434	0					44	17	4	0	0	0	0.99042	1	7892	7892		38.806	1.647	1	7480900	+		16494	26213	11625	11646	18198	18198					0.08134350685509162
FLLAGLVAVAL	11	Unmodified	_FLLAGLVAVAL_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2974853515625	2	543.84971	1085.68487	0.2987	0.00016245	-0.59383	-0.00032295	-0.29512	-0.0001605	543.8491921922279	77.044	0.37238	76.792	76.571	76.943	-0.25162					12	8	2	0	0	0	0.024764	1	9182	9182		50.025	14.406	1	182440			16495	10547	11626	11647	18199	18199					0.1454524044761456
FLLAGLVAVAL	11	Unmodified	_FLLAGLVAVAL_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	543.84971	1085.68487	-0.80649	-0.00043861	0.61679	0.00033544	-0.1897	-0.00010317	543.850093839186	77.186	1.037	76.975	76.708	77.745	-0.21087	0.059221	0.00045901	NaN	50.025	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1257600			16496	10547	11626	11647							0.1454524044761456
FLLAGLVAVAL	11	Unmodified	_FLLAGLVAVAL_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.84971	1085.68487	-0.68353	-0.00037174	0.68605	0.00037311	0.0025136	1.367E-06	543.8499944066485	77.028	0.9594	77.041	76.818	77.777	0.013504	0.12541	0.00053434	NaN	50.025	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	961820			16497	10547	11626	11647							0.1454524044761456
FLLAGLVAVAL	11	Unmodified	_FLLAGLVAVAL_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.84971	1085.68487	0.16869	9.1741E-05	0.096792	5.264E-05	0.26548	0.00014438	543.8494625986481	77.09	0.29191	76.822	76.595	76.887	-0.26806	-0.093625	-0.00010659	NaN	50.025	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236270			16498	10547	11626	11647							0.1454524044761456
FLLAGLVAVAL	11	Unmodified	_FLLAGLVAVAL_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.84971	1085.68487	-0.96503	-0.00052483	1.085	0.00059007	0.11995	6.5235E-05	543.8499826562667	77.009	0.41473	76.841	76.525	76.94	-0.16811	-0.07477	0.00096827	NaN	50.025	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154250			16499	10547	11626	11647							0.1454524044761456
FLLALALLMY	10	Unmodified	_FLLALALLMY_					0	0	0		PANX3|p.S113F|1|0.14|ENSG00000154143|chr11:124617287-124617287|C/T|missense_variant	PANX3|p.S113F|1|0.14|ENSG00000154143|chr11:124617287-124617287|C/T|missense_variant	PANX3|p.S113F|1|0.14|ENSG00000154143|chr11:124617287-124617287|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3302001953125	2	584.345946	1166.67734	0.64441	0.00037656	-1.0956	-0.00064018	-0.45115	-0.00026363	584.3453035360942	60.018	0.1852	59.821	59.689	59.874	-0.19742					6	4	2	0	0	0	0.03519	1	6651	6651		44.531	0	1	88338			16500	18938	11627	11648	18200	18200					0.10066764855673682
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.80224609375	2	522.802426	1043.5903	-0.74457	-0.00038926	0.76075	0.00039772	0.016181	8.4596E-06	522.8026666660162	97.124	2.4312	97.124	96.748	99.179	0					119	55	5	0	0	0	0.13494	1	12386	12386		102.77	8.7669	1	2413800			16501	7168	11628	11649	18201	18201					0.07024681905613761
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.802490234375	2	522.802426	1043.5903	0.34027	0.00017789	-0.37055	-0.00019372	-0.030281	-1.5831E-05	522.8021152422203	97.025	2.4702	97.034	96.619	99.089	0.0089111					130	56	4	0	0	0	0.15029	3	12352	12352;12364;12378		99.375	8.5983	1	2722800			16502	7168	11628	11649	18202;18203;18204	18202					0.07024681905613761
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.8023681640625	2	522.802426	1043.5903	0.83839	0.00043831	-0.91316	-0.0004774	-0.074763	-3.9086E-05	522.8018759562021	97.147	2.5107	97.147	96.793	99.304	-3.0518E-05					129	57	5	0	0	0	0.18915	1	12334	12334		90.777	3.0224	1	2484000			16503	7168	11628	11649	18205	18205					0.07024681905613761
FLLALEPEL	9	Unmodified	_FLLALEPEL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.802490234375	2	522.802426	1043.5903	1.0938	0.00057183	-1.1571	-0.00060491	-0.063282	-3.3084E-05	522.8017479620929	97.019	1.637	96.896	96.351	97.988	-0.12369					121	37	5	0	0	0	0.4752	1	12029	12029		60.972	2.19	1	2366800			16504	7168	11628	11649	18206	18206					0.07024681905613761
FLLALKLSD	9	Unmodified	_FLLALKLSD_					0	0	0			REV__nc|ENSG00000125744|O75298-2|RTN2	REV__nc|ENSG00000125744|O75298-2|RTN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.84423828125	2	510.310418	1018.60628	0.011322	5.7778E-06	0.66217	0.00033791	0.6735	0.00034369	510.31006717254786	75.822	1.2839	75.646	75.234	76.518	-0.17548					72	31	3	0	0	0	0.023817	1	8973	8973		82.305	15.876	1	466120	+		16505	22839	11629	11650	18207	18207					0.09772388142516775
FLLALLFFL	9	Unmodified	_FLLALLFFL_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.2915649414062	2	548.843897	1095.67324	0.18389	0.00010093	2.1099	0.001158	2.2938	0.0012589	549.3459207961305	72.449	0.50875	72.168	71.956	72.465	-0.28124					19	12	2	0	0	0	0.023868	1	8809	8809		60.404	11.193	1	281060			16506	2433	11630	11651	18208	18208					0.12923043424279967
FLLARGVAEAR	11	Unmodified	_FLLARGVAEAR_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.5721435546875	3	401.571657	1201.69314	0.78603	0.00031565	-0.22916	-9.2025E-05	0.55687	0.00022362	401.5714654543058	33.394	1.065	33.194	32.73	33.795	-0.20019					76	26	4	0	0	0	0.9703	1	2387	2387		43.419	0.55427	1	2289500			16507	4616	11631	11652	18209	18209					0.10036187416926623
FLLCAALGCL	10	Unmodified	_FLLCAALGCL_					0	0	0		ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.269775390625	2	512.271924	1022.52929	-0.70803	-0.0003627	-0.26461	-0.00013555	-0.97264	-0.00049826	512.2712607905927	104.7	1.035	104.57	104.16	105.19	-0.12927					66	32	3	0	0	0	1.1309	1	13074	13074		26.796	0	1	187370			16508	963	11632	11653	18210	18210					0.01893130330176973
FLLCFYFF	8	Unmodified	_FLLCFYFF_					0	0	0		ENST00000310137.4_1_11:66394378-66394552:+|nuORF	ENST00000310137.4_1_11:66394378-66394552:+|nuORF	ENST00000310137.4_1_11:66394378-66394552:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2923583984375	2	550.269707	1098.52486	0.18639	0.00010257	1.2548	0.00069045	1.4412	0.00079302	550.2711160389541	78.963	0.79877	78.732	78.433	79.232	-0.23141					33	18	3	0	0	0	0.027866	1	9438	9438		33.493	18.829	1	110150			16509	12057	11633	11654	18211	18211					-0.020460108210727412
FLLCRGIGTVV	11	Unmodified	_FLLCRGIGTVV_					0	0	0			REV__ENST00000296328.8_1_3:196082686-196082773:-|nuORF	REV__ENST00000296328.8_1_3:196082686-196082773:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3438110351562	2	589.341726	1176.6689	-1.3447	-0.00079247	3.1761	0.0018718	1.8315	0.0010794	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	0.99553	1	11593	11593		37.812	7.3079	1	13724000	+		16510	29992	11634	11655	18212	18212					0.08763210939059718
FLLCRGIGTVV	11	Unmodified	_FLLCRGIGTVV_					0	0	0			REV__ENST00000296328.8_1_3:196082686-196082773:-|nuORF	REV__ENST00000296328.8_1_3:196082686-196082773:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3425903320312	2	589.341726	1176.6689	0.82715	0.00048747	1.5091	0.00088936	2.3362	0.0013768	589.3423171920064	103.68	0.66261	103.68	103.44	104.11	-0.0032196					38	15	3	0	0	0	0.9728	1	13221	13221		42.864	7.7122	1	579690	+		16511	29992	11634	11655	18213	18213					0.08763210939059718
FLLDEVKI	8	Unmodified	_FLLDEVKI_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7892761230469	2	488.789318	975.564084	0.32519	0.00015895	-0.50975	-0.00024916	-0.18456	-9.0211E-05	488.7889567870726	100.57	0.45241	100.4	100.18	100.63	-0.17088					21	11	3	0	0	0	0.845	1	12464	12464		55.504	7.5886	1	352220	+		16512	22104	11635	11656	18214	18214					0.075324127341446
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.8237915039062	2	582.824224	1163.63389	-1.3693	-0.00079808	1.3807	0.00080469	0.011344	6.6118E-06	582.8249458423519	78.32	1.6548	78.32	77.792	79.447	0					117	39	4	0	0	0	0.0041366	5	9688	9677;9688;9698;9711;9725		182.39	51.36	1	3513000			16513	739	11636	11657	18215;18216;18217;18218;18219	18216					0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.82373046875	2	582.824224	1163.63389	-0.30235	-0.00017622	0.26496	0.00015443	-0.037391	-2.1792E-05	582.824252271536	78.451	1.9074	78.259	77.683	79.59	-0.1921					129	45	4	0	0	0	0.011429	6	9672	9661;9672;9684;9695;9708;9727		169.65	59.532	1	3529200			16514	739	11636	11657	18220;18221;18222;18223;18224;18225	18221					0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.8236083984375	2	582.824224	1163.63389	0.0021968	1.2804E-06	-0.048283	-2.814E-05	-0.046086	-2.686E-05	582.8241427976259	78.359	1.5659	78.375	77.948	79.514	0.015907					98	37	4	0	0	0	0.060517	5	9631	9607;9617;9631;9643;9654		145.46	47.183	1	3838000			16515	739	11636	11657	18226;18227;18228;18229;18230	18228					0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	582.824224	1163.63389	-0.35334	-0.00020593	0.48553	0.00028298	0.13219	7.7045E-05	582.8243303112172	78.412	0.73184	78.157	77.869	78.6	-0.25471	-0.069877	1.15E-05	NaN	182.39	54	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	755690			16516	739	11636	11657							0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	582.824224	1163.63389	-0.38793	-0.00022609	0.29515	0.00017202	-0.09278	-5.4074E-05	582.8244223702974	78.349	0.72863	78.118	77.791	78.52	-0.23141	-0.10936	-0.00021042	NaN	182.39	50	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	898560			16517	739	11636	11657							0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-3|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	ENST00000469238.1_1_1:33480014-33487286:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	582.824224	1163.63389	-0.51601	-0.00030074	0.43687	0.00025462	-0.079142	-4.6126E-05	582.8245072810447	78.289	0.68637	78.133	77.784	78.47	-0.15591	-0.094119	-4.5221E-05	NaN	182.39	48	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	871300			16518	739	11636	11657							0.058622914027409934
FLLDGKVLSL	10	Unmodified	_FLLDGKVLSL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;STK11IP|p.A531Gfs*32|1|0.33|ENSG00000144589|chr2:219608385-219608386|-/GCTC|frameshift_variant;ENST00000465230.5_1_2:220471080-220471347:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.8367919921875	2	552.8368	1103.65905	-0.79021	-0.00043686	0.64192	0.00035488	-0.14829	-8.1979E-05	552.8369939817037	83.6	1.2769	83.6	83.351	84.628	0					79	29	4	0	0	0	0.37509	1	10458	10458		101.25	16.337	1	933880			16519	5750	11637	11658	18231	18231					0.1113634620535322
FLLDGKVLSL	10	Unmodified	_FLLDGKVLSL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;STK11IP|p.A531Gfs*32|1|0.33|ENSG00000144589|chr2:219608385-219608386|-/GCTC|frameshift_variant;ENST00000465230.5_1_2:220471080-220471347:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8368530273438	2	552.8368	1103.65905	-0.881	-0.00048705	0.69637	0.00038498	-0.18463	-0.00010207	552.8370221239718	83.679	1.1524	83.588	83.257	84.41	-0.090454					64	26	3	0	0	0	0.18296	2	10423	10423;10434		123.21	21.607	1	958100			16520	5750	11637	11658	18232;18233	18232					0.1113634620535322
FLLDGKVLSL	10	Unmodified	_FLLDGKVLSL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;STK11IP|p.A531Gfs*32|1|0.33|ENSG00000144589|chr2:219608385-219608386|-/GCTC|frameshift_variant;ENST00000465230.5_1_2:220471080-220471347:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8367919921875	2	552.8368	1103.65905	-0.92137	-0.00050937	0.77837	0.00043031	-0.14299	-7.9052E-05	552.8370697403262	83.531	1.1179	83.557	83.257	84.375	0.026558					65	25	4	0	0	0	0.24941	1	10375	10375		114.89	3.2463	1	963900			16521	5750	11637	11658	18234	18234					0.1113634620535322
FLLDGSERL	9	Unmodified	_FLLDGSERL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.284912109375	2	525.284931	1048.55531	-0.40556	-0.00021303	-0.090826	-4.771E-05	-0.49638	-0.00026074	525.2849906305727	66.167	0.78584	65.926	65.625	66.41	-0.24145					68	19	6	0	0	0	0.086035	3	7575	7575;7587;7600		115.49	18.069	1	4026100			16522	5540	11638	11659	18235;18236;18237	18235					0.03297439097673305
FLLDGSERL	9	Unmodified	_FLLDGSERL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2847290039062	2	525.284931	1048.55531	-0.71305	-0.00037455	0.3467	0.00018212	-0.36635	-0.00019244	525.2850963215387	66.126	0.74928	65.913	65.629	66.378	-0.21327					73	18	7	0	0	0	0.020687	4	7584	7562;7571;7584;7596		148.99	41.979	1	3992900			16523	5540	11638	11659	18238;18239;18240;18241	18240					0.03297439097673305
FLLDGSERL	9	Unmodified	_FLLDGSERL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2860717773438	2	525.284931	1048.55531	-0.36114	-0.0001897	0.11907	6.2547E-05	-0.24207	-0.00012716	525.2850051749386	66.135	0.7422	65.884	65.603	66.345	-0.25112					65	18	5	0	0	0	0.027092	4	7554	7554;7565;7577;7591		143.89	28.428	1	4128400			16524	5540	11638	11659	18242;18243;18244;18245	18242					0.03297439097673305
FLLDGSERL	9	Unmodified	_FLLDGSERL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.284931	1048.55531	0.013585	7.1361E-06	0.23904	0.00012556	0.25262	0.0001327	525.284856104379	65.802	0.49921	65.802	65.566	66.065	0	-0.07127	-3.0065E-05	NaN	148.99	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1168000			16525	5540	11638	11659							0.03297439097673305
FLLDGSERL	9	Unmodified	_FLLDGSERL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.284931	1048.55531	-0.31169	-0.00016372	0.65458	0.00034384	0.34289	0.00018011	525.2851643859826	66.133	0.60495	65.86	65.498	66.103	-0.27282	-0.012898	0.00040649	NaN	148.99	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1327500			16526	5540	11638	11659							0.03297439097673305
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.8260498046875	2	516.826235	1031.63792	-0.58489	-0.00030228	-0.0042923	-2.2184E-06	-0.58918	-0.0003045	516.8261813958226	56.884	1.1451	56.884	56.535	57.68	0					113	31	5	0	0	0	0.020687	6	6392	6345;6356;6368;6379;6392;6407		148.99	66.682	1	22948000			16527	7527	11639	11660	18246;18247;18248;18249;18250;18251	18250					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.825927734375	2	516.826235	1031.63792	-0.16422	-8.4873E-05	-0.48631	-0.00025134	-0.65053	-0.00033621	516.825922410252	57.089	1.1216	56.925	56.535	57.656	-0.16431					116	30	5	0	0	0	0.015901	6	6385	6339;6350;6362;6373;6385;6397		157.33	59.856	1	20250000			16528	7527	11639	11660	18252;18253;18254;18255;18256;18257	18256					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.8258666992188	2	516.826235	1031.63792	-0.7312	-0.0003779	0.12206	6.3082E-05	-0.60914	-0.00031482	516.8262659972543	56.706	0.99567	56.804	56.51	57.505	0.097893					101	27	5	0	0	0	0.020687	6	6276	6241;6253;6264;6276;6287;6302		148.99	63.627	1	23712000			16529	7527	11639	11660	18258;18259;18260;18261;18262;18263	18261					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.8261108398438	2	516.826235	1031.63792	-0.49274	-0.00025466	0.58275	0.00030118	0.090006	4.6518E-05	516.8263889664394	56.938	1.1646	56.771	56.482	57.646	-0.1672					78	30	4	0	0	0	0.033448	3	6205	6182;6190;6205		138.83	44.819	1	5328500			16530	7527	11639	11660	18264;18265;18266	18266					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.8256225585938	2	516.826235	1031.63792	0.35878	0.00018543	-0.37455	-0.00019358	-0.015762	-8.1462E-06	516.8259125436548	57.001	1.1423	56.799	56.52	57.662	-0.20208					72	30	4	0	0	0	0.077175	3	6197	6186;6197;6211		118.74	50.258	1	5443200			16531	7527	11639	11660	18267;18268;18269	18268					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.8265380859375	2	516.826235	1031.63792	0.072875	3.7664E-05	-0.091181	-4.7125E-05	-0.018305	-9.4606E-06	516.8260635249403	57.095	1.1671	56.87	56.544	57.711	-0.2248					88	30	5	0	0	0	0.016871	3	6209	6185;6196;6209		152.47	43.509	1	5566600			16532	7527	11639	11660	18270;18271;18272	18272					0.12336380896454102
FLLDSQIQD	9	Unmodified	_FLLDSQIQD_					0	0	0		ENSG00000132016|ENST00000586783|BRME1;nc|ENSG00000132016|Q0VDD7-2|BRME1	ENSG00000132016|ENST00000586783|BRME1	ENSG00000132016|ENST00000586783|BRME1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2962036132812	2	539.774396	1077.53424	-0.24804	-0.00013389	1.4574	0.00078669	1.2094	0.00065281	539.7752578479286	87.385	0.90639	87.385	86.899	87.805	0					42	21	3	0	0	0	0.019995	1	11038	11038		113.41	0	1	318210			16533	4570	11640	11661	18273	18273					-0.001425710018565951
FLLEFLGSI	9	Unmodified	_FLLEFLGSI_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8204956054688	2	519.797143	1037.57973	-0.93816	-0.00048765	3.5667	0.001854	2.6285	0.0013663	520.3016265691967	80.869	0.35168	80.869	80.746	81.097	0					13	8	2	0	0	0	0.024436	1	10076	10076		38.806	18.809	1	1305900	+		16534	25823	11641	11662	18274	18274					0.06244699251192287
FLLEGIRSL	9	Unmodified	_FLLEGIRSL_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.3126831054688	2	524.313492	1046.61243	-0.23735	-0.00012445	1.1497	0.00060282	0.91239	0.00047838	524.3140269223265	75.331	0.61878	75.058	74.766	75.384	-0.27267					49	14	4	0	0	0	0.16539	1	8901	8901		96.034	7.3907	1	1029000			16535	3969	11642	11663	18275	18275					0.09098906374038052
FLLEGIRSL	9	Unmodified	_FLLEGIRSL_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.311279296875	2	524.313492	1046.61243	0.3512	0.00018414	0.67714	0.00035503	1.0283	0.00053917	524.3137067699245	75.17	0.62328	74.995	74.689	75.312	-0.17548					50	14	4	0	0	0	0.11727	2	8865	8865;8878		106.68	13.729	1	897720			16536	3969	11642	11663	18276;18277	18276					0.09098906374038052
FLLEIVSFLLR	11	Unmodified	_FLLEIVSFLLR_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2744445800781	3	450.611229	1348.81186	-1.3853	-0.00062421	0.64774	0.00029188	-0.73751	-0.00033233	450.94478983700145	92.37	0.19823	92.227	92.087	92.285	-0.14356					6	4	2	0	0	0	0.024865	1	11329	11329		8.4073	0	1	47123			16537	10283	11643	11664	18278	18278					0.15140541601954283
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.297119140625	2	549.297507	1096.58046	-1.3224	-0.00072638	0.27616	0.00015169	-1.0462	-0.00057469	549.2976001020606	62.32	0.82171	62.32	62.117	62.938	0					42	23	2	0	0	0	0.086035	1	7252	7252		115.49	13.893	1	2483200			16538	3234	11644	11665	18279	18279					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.296142578125	2	549.297507	1096.58046	-1.6079	-0.0008832	-0.30245	-0.00016613	-1.9103	-0.0010493	549.2971717395881	62.502	1.0672	62.263	61.753	62.821	-0.23926					53	30	2	0	0	0	0.15388	2	7246	7246;7256		98.582	11.737	1	2386600			16539	3234	11644	11665	18280;18281	18280					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.297607421875	2	549.297507	1096.58046	-1.4867	-0.00081664	-0.52326	-0.00028743	-2.01	-0.0011041	549.2971375372593	62.245	0.93702	62.308	62.087	63.024	0.062767					51	23	3	0	0	0	0.071379	1	7161	7161		120.87	30.499	1	2812500			16540	3234	11644	11665	18282	18282					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.2962036132812	2	549.297507	1096.58046	-0.32827	-0.00018032	-1.1622	-0.00063839	-1.4905	-0.00081871	549.2967220024997	62.489	1.2876	62.268	61.693	62.98	-0.22097					64	34	4	0	0	0	0.03666	3	7037	7027;7037;7049		136.27	45.898	1	5634000			16541	3234	11644	11665	18283;18284;18285	18284					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.298095703125	2	549.297507	1096.58046	-0.87576	-0.00048106	0.21335	0.00011719	-0.66241	-0.00036386	549.2974543158738	62.431	0.77299	62.252	61.727	62.5	-0.17886					57	21	5	0	0	0	0.016542	3	7043	7020;7031;7043		154.12	43.998	1	5487700			16542	3234	11644	11665	18286;18287;18288	18288					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	nc|ENSG00000112699|O60547-2|GMDS	nc|ENSG00000112699|O60547-2|GMDS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.2970581054688	2	549.297507	1096.58046	-0.54203	-0.00029774	-0.33551	-0.0001843	-0.87755	-0.00048203	549.2971607909138	62.593	1.5701	62.335	61.82	63.39	-0.25824					87	42	3	0	0	0	0.041068	4	7037	7027;7037;7051;7056		132.76	41.037	1	4669500			16543	3234	11644	11665	18289;18290;18291;18292	18290					0.03603493900232024
FLLELCINL	9	Unmodified	_FLLELCINL_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|287|3|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|287|3|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|287|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2968139648438	2	539.304278	1076.594	-0.54147	-0.00029202	0.33354	0.00017988	-0.20793	-0.00011214	539.304217423248	87.863	0.5069	87.684	87.534	88.041	-0.17875					15	12	2	0	0	0	0.015768	1	10672	10672		108.09	0	1	301240			16544	17730	11645	11666	18293	18293					0.05877028407803664
FLLEQLGEKL	10	Unmodified	_FLLEQLGEKL_					0	0	0		ENST00000550596.5_1_12:57998631-57999917:+|nuORF;ENST00000548198.5_1_12:57999629-57999917:+|nuORF	ENST00000550596.5_1_12:57998631-57999917:+|nuORF	ENST00000550596.5_1_12:57998631-57999917:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	595.3455200195312	2	595.344989	1188.67542	0.07403	4.4073E-05	-0.3181	-0.00018938	-0.24407	-0.00014531	595.344671794927	71.772	1.7117	71.782	71.433	73.145	0.0097733					99	43	4	0	0	0	0.42812	1	8657	8657		95.815	12.168	1	6523700			16545	16549	11646	11667	18294	18294					0.08863427371420585
FLLFQLYY	8	Unmodified	_FLLFQLYY_					0	0	0		FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN;ENST00000490134.1_1_9:108337313-108359001:+|nuORF	FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7969970703125	2	553.799686	1105.58482	0.022292	1.2345E-05	-3.6874	-0.0020421	-3.6651	-0.0020297	553.797488373303	80.604	2.2037	80.366	80.082	82.286	-0.23784					113	52	3	0	0	0	0.71717	1	9645	9645		65.897	4.9255	1	2313500			16546	2810	11647	11668	18295	18295					0.0362500311380245
FLLFQLYY	8	Unmodified	_FLLFQLYY_					0	0	0		FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN;ENST00000490134.1_1_9:108337313-108359001:+|nuORF	FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7975463867188	2	553.799686	1105.58482	-0.22071	-0.00012223	-3.546	-0.0019638	-3.7667	-0.002086	553.7976088334715	80.542	2.0042	80.396	80.076	82.08	-0.146					97	47	3	0	0	0	0.95417	1	9662	9662		44.531	6.7195	1	2813200			16547	2810	11647	11668	18296	18296					0.0362500311380245
FLLGLLSDE	9	Unmodified	_FLLGLLSDE_					0	0	0		ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7789001464844	2	503.776408	1005.53826	0.064876	3.2683E-05	3.9126	0.0019711	3.9775	0.0020038	503.77840521492055	24.025	2.611	24.103	23.352	25.963	0.077791					161	59	5	0	0	0	0.62163	1	949	949		51.335	5.3835	1	908260			16548	1965	11648	11669	18297	18297					0.03571518491844472
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.855712890625	2	549.855327	1097.6961	-0.66835	-0.00036749	0.54642	0.00030045	-0.12193	-6.7043E-05	549.8554926606838	79.902	1.6023	79.902	79.616	81.218	0					94	38	3	0	0	0	0.82838	1	9936	9936		58.782	9.3404	1	1386000			16549	8027	11649	11670	18298	18298					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.8558349609375	2	549.855327	1097.6961	-1.5028	-0.00082634	1.264	0.00069503	-0.2388	-0.00013131	549.8558519377254	80.092	1.6483	79.941	79.588	81.237	-0.15169					105	39	4	0	0	0	0.57825	3	9901	9901;9911;9924		79.451	23.947	1	1370200			16550	8027	11649	11670	18299;18300;18301	18299					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.8555908203125	2	549.855327	1097.6961	-0.99053	-0.00054465	0.72834	0.00040048	-0.26218	-0.00014416	549.8555847355141	79.951	1.3984	79.973	79.645	81.044	0.021446					81	33	3	0	0	0	0.71272	3	9859	9847;9859;9871		66.429	19.976	1	1332300			16551	8027	11649	11670	18302;18303;18304	18303					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.85595703125	2	549.855327	1097.6961	0.34829	0.00019151	0.042539	2.3391E-05	0.39083	0.0002149	549.8551467703314	79.887	1.1198	79.641	79.362	80.482	-0.2465					62	26	4	0	0	0	0.71272	2	9551	9551;9562		66.429	19.976	1	1150400			16552	8027	11649	11670	18305;18306	18305					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.855224609375	2	549.855327	1097.6961	0.18177	9.9946E-05	0.054166	2.9784E-05	0.23593	0.00012973	549.8551879047029	79.874	1.0442	79.655	79.327	80.372	-0.21923					55	24	4	0	0	0	0.57825	3	9587	9565;9575;9587		79.451	31.535	1	1161400			16553	8027	11649	11670	18307;18308;18309	18309					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.8555297851562	2	549.855327	1097.6961	-0.014978	-8.2358E-06	0.34742	0.00019103	0.33244	0.00018279	549.8553382137868	79.763	1.0842	79.613	79.321	80.405	-0.15051					59	25	4	0	0	0	0.67706	3	9549	9537;9549;9560		68.787	20.871	1	1127600			16554	8027	11649	11670	18310;18311;18312	18311					0.15116062541756037
FLLGSSEVSI	10	Unmodified	_FLLGSSEVSI_					0	0	0		ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2883911132812	2	526.28714	1050.55973	-1.0054	-0.00052912	0.4938	0.00025988	-0.51159	-0.00026924	526.2873767369624	82.342	1.3142	82.342	81.909	83.223	0					75	30	4	0	0	0	0.67706	1	10319	10319		68.787	2.3575	1	7235600			16555	17497	11650	11671	18313	18313					0.03646903520575506
FLLGYVPDS	9	Unmodified	_FLLGYVPDS_					0	0	0		ENST00000436336.6_1_7:99054594-99054750:+|nuORF	ENST00000436336.6_1_7:99054594-99054750:+|nuORF	ENST00000436336.6_1_7:99054594-99054750:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.7840576171875	2	505.7633	1009.51205	-0.70084	-0.00035446	-3.1653	-0.0016009	-3.8661	-0.0019553	505.76151532155427	38.528	0.31374	38.446	38.217	38.531	-0.082516					14	7	3	0	0	0	0.024443	1	3209	3209		26.796	1.222	1	384130			16556	14276	11651	11672	18314	18314					0.0076724932038132465
FLLGYVPDS	9	Unmodified	_FLLGYVPDS_					0	0	0		ENST00000436336.6_1_7:99054594-99054750:+|nuORF	ENST00000436336.6_1_7:99054594-99054750:+|nuORF	ENST00000436336.6_1_7:99054594-99054750:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.7633	1009.51205	-1.0146	-0.00051316	-2.818	-0.0014252	-3.8326	-0.0019384	505.76176774673024	38.574	0.28335	38.574	38.356	38.639	0	-0.011471	0.00010696	NaN	26.796	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435090			16557	14276	11651	11672							0.0076724932038132465
FLLHHNVTL	9	Unmodified	_FLLHHNVTL_					0	0	0			REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.310546875	2	547.311284	1092.60801	-0.2341	-0.00012813	-1.9481	-0.0010662	-2.1822	-0.0011944	547.3100524475716	67.663	1.0066	67.663	67.326	68.332	0					74	25	5	0	0	0	0.17822	1	8108	8108		93.195	0.052222	1	6778600	+		16558	19700	11652	11673	18315	18315					0.06541441951139859
FLLHIQQQV	9	Unmodified	_FLLHIQQQV_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.3239135742188	2	563.324391	1124.63423	-0.076797	-4.3262E-05	-0.6949	-0.00039145	-0.7717	-0.00043472	563.3238844923742	62.84	0.76815	62.619	62.489	63.257	-0.22097					32	19	2	0	0	0	0.11848	2	7090	7079;7090		106.42	31.899	1	1005400			16559	3311	11653	11674	18316;18317	18317					0.0768971112258896
FLLHIQQQV	9	Unmodified	_FLLHIQQQV_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.3248901367188	2	563.324391	1124.63423	-0.41611	-0.0002344	-0.51946	-0.00029262	-0.93557	-0.00052703	563.3240258873963	62.91	0.94698	62.726	62.518	63.465	-0.18386					42	26	2	0	0	0	0.074956	1	7093	7093		119.56	23.742	1	1092000			16560	3311	11653	11674	18318	18318					0.0768971112258896
FLLHIQQQV	9	Unmodified	_FLLHIQQQV_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.3239135742188	2	563.324391	1124.63423	-0.17718	-9.9812E-05	-0.23272	-0.0001311	-0.40991	-0.00023091	563.3240087983075	62.97	0.73461	62.711	62.541	63.276	-0.25824					40	19	3	0	0	0	0.13494	1	7092	7092		102.77	28.257	1	969790			16561	3311	11653	11674	18319	18319					0.0768971112258896
FLLIGAIVGAI	11	Unmodified	_FLLIGAIVGAI_					0	0	0			REV__nc|ENSG00000173482|P28827|PTPRM;REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	REV__nc|ENSG00000173482|P28827|PTPRM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.789794921875	2	543.84971	1085.68487	-0.6847	-0.00037238	-4.4687	-0.0024303	-5.1534	-0.0028027	543.8470167733418	49.622	0.77733	49.471	49.182	49.96	-0.1512					47	20	3	0	0	0	0.02474	1	5084	5084		31.955	0	1	658240	+		16562	26777;35482	11654	11675	18320	18320					0.1454524044761456
FLLLAIHKV	9	Unmodified	_FLLLAIHKV_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.2713623046875	2	527.344595	1052.67464	-0.36014	-0.00018992	-4.3823	-0.002311	-4.7424	-0.0025009	527.3422062205395	47.75	0.6946	47.474	47.157	47.851	-0.27598					28	18	2	0	0	0	0.024535	1	4645	4645		25.45	0	1	343800	+		16563	23931	11655	11676	18321	18321					0.1504067751304774
FLLLAILAAT	10	Unmodified	_FLLLAILAAT_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3035278320312	2	523.336436	1044.65832	0.10212	5.3444E-05	-0.75726	-0.0003963	-0.65514	-0.00034286	523.3358815800062	85.556	0.80783	85.361	85.088	85.895	-0.19508					34	18	3	0	0	0	0.03519	1	10413	10413		35.618	0	1	196000			16564	8563	11656	11677	18322	18322					0.13777551556268008
FLLLFTAQL	9	Unmodified	_FLLLFTAQL_					0	0	0		ENST00000446198.5_1_7:131188058-131188277:-|nuORF	ENST00000446198.5_1_7:131188058-131188277:-|nuORF	ENST00000446198.5_1_7:131188058-131188277:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3193359375	2	533.320786	1064.62702	0.22848	0.00012185	-2.897	-0.001545	-2.6685	-0.0014232	533.3193958870153	106.38	0.47508	106.38	106.2	106.68	0					30	14	3	0	0	0	0.53979	2	13656	13656;13682		56.721	3.3696	1	253890			16565	14451	11657	11678	18323;18324	18323					0.09728978522161924
FLLLLLPPPT	10	Unmodified	_FLLLLLPPPT_					0	0	0			REV__ENSG00000177707|ENST00000485303|NECTIN3	REV__ENSG00000177707|ENST00000485303|NECTIN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.359130859375	2	562.359911	1122.70527	-0.84942	-0.00047768	3.6736	0.0020659	2.8242	0.0015882	562.36176829605	105.62	0.38317	105.49	105.35	105.73	-0.13099					20	13	2	0	0	0	1.1129	1	13171	13171		17.365	1.7232	1	165340	+		16566	27142	11658	11679	18325	18325					0.14882411107419102
FLLLVSFYL	9	Unmodified	_FLLLVSFYL_					0	0	0			REV__ENST00000540664.5_1_10:98722597-98722837:+|nuORF	REV__ENST00000540664.5_1_10:98722597-98722837:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.3358154296875	2	557.830986	1113.64742	0.42111	0.00023491	-4.3466	-0.0024246	-3.9254	-0.0021897	557.8285532187809	100.93	0.38535	100.92	100.72	101.11	-0.0054474					15	8	3	0	0	0	0.024487	1	12854	12854		40.573	0	1	85552	+		16567	34753	11659	11680	18326	18326					0.09514149181973153
FLLLVSFYL	9	Unmodified	_FLLLVSFYL_					0	0	0			REV__ENST00000540664.5_1_10:98722597-98722837:+|nuORF	REV__ENST00000540664.5_1_10:98722597-98722837:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.830986	1113.64742	0.10828	6.0403E-05	-2.7132	-0.0015135	-2.605	-0.0014531	557.8290068656297	100.82	0.58429	100.82	100.62	101.2	0	-0.049229	0.00081522	NaN	40.573	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77213	+		16568	34753	11659	11680							0.09514149181973153
FLLMQLMLL	9	Unmodified	_FLLMQLMLL_					0	0	0			REV__ENSG00000130287|ENST00000252575|NCAN	REV__ENSG00000130287|ENST00000252575|NCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.30908203125	2	561.326699	1120.63885	-0.42753	-0.00023999	-3.6804	-0.0020659	-4.1079	-0.0023059	561.3247201569503	69.042	0.34356	69.057	68.865	69.209	0.015129					11	8	2	0	0	0	0.024	1	8216	8216		45.952	0	1	78757	+		16569	23098	11660	11681	18327	18327					0.08335135949528194
FLLNYSLDL	9	Unmodified	_FLLNYSLDL_					0	0	0			REV__ENSG00000174123|ENST00000308973|TLR10	REV__ENSG00000174123|ENST00000308973|TLR10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.2947387695312	2	549.297507	1096.58046	-1.4867	-0.00081664	-0.52326	-0.00028743	-2.01	-0.0011041	549.2971375372593	62.245	0.93702	62.308	62.087	63.024	0.062767					51	23	3	0	0	0	0.10174	1	7171	7171		110.12	16.977	1	2812500	+		16570	26833	11661	11682	18328	18328					0.03603493900232024
FLLPEMDN	8	Unmodified	_FLLPEMDN_					0	0	0		nc|ENSG00000091879|O15123-2|ANGPT2;ENSG00000091879|ENST00000629816|ANGPT2;nc|ENSG00000091879|O15123|ANGPT2	nc|ENSG00000091879|O15123-2|ANGPT2	nc|ENSG00000091879|O15123-2|ANGPT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.7738342285156	2	489.733686	977.452819	-0.62119	-0.00030422	0.95392	0.00046717	0.33273	0.00016295	489.73387011797416	65.65	0.33301	65.409	65.167	65.5	-0.24145					13	7	2	0	0	0	0.027866	1	7508	7508		18.324	0	1	114450			16571	1971	11662	11683	18329	18329					-0.036809699654554606
FLLPHPGLQV	10	Unmodified	_FLLPHPGLQV_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.8295288085938	2	560.829309	1119.64407	0.36604	0.00020529	-1.0404	-0.00058349	-0.67436	-0.0003782	560.8285577401489	72.201	0.90819	71.939	71.48	72.388	-0.26199					58	21	4	0	0	0	0.67706	1	8468	8468		68.787	10.976	1	1212300			16572	9366	11663	11684	18330	18330					0.08902899127997443
FLLPHPGLQV	10	Unmodified	_FLLPHPGLQV_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.8294067382812	2	560.829309	1119.64407	-0.3613	-0.00020263	0.0085714	4.8071E-06	-0.35273	-0.00019782	560.8292980490656	72.051	0.74236	71.845	71.497	72.24	-0.20613					42	17	3	0	0	0	0.60198	2	8442	8425;8442		76.774	25.439	1	1159400			16573	9366	11663	11684	18331;18332	18332					0.08902899127997443
FLLPIKTVGV	10	Unmodified	_FLLPIKTVGV_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8483276367188	2	543.84971	1085.68487	-0.17472	-9.5024E-05	-0.26255	-0.00014279	-0.43728	-0.00023781	543.8495346394983	77.023	0.8728	77.023	76.799	77.672	0					46	20	3	0	0	0	0.83673	1	9504	9504		58.23	8.2054	1	627080			16574	7126	11664	11685	18333	18333					0.1454524044761456
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.3283081054688	2	522.328611	1042.64267	0.20557	0.00010738	-0.3808	-0.0001989	-0.17523	-9.1527E-05	522.3283130096203	106.39	1.4245	106.39	106.04	107.47	0					141	46	5	0	0	0	0.2101	1	13704	13704		87.696	13.441	1	6277700			16575	18066	11665	11686	18334	18334					0.12305265039231017
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3284301757812	2	522.328611	1042.64267	-0.093336	-4.8752E-05	0.045019	2.3514E-05	-0.048317	-2.5237E-05	522.3285412742555	106.36	1.6675	106.35	105.78	107.44	-0.0013123					132	55	4	0	0	0	0.014988	3	13609	13592;13600;13609		161.9	36.084	1	6763000			16576	18066	11665	11686	18335;18336;18337	18337					0.12305265039231017
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3286743164062	2	522.328611	1042.64267	-0.058669	-3.0645E-05	-0.011561	-6.0389E-06	-0.070231	-3.6684E-05	522.3284951151045	106.46	1.543	106.46	105.92	107.47	0.00033569					130	49	4	0	0	0	0.013333	3	13575	13568;13575;13584		191.63	43.932	1	5295000			16577	18066	11665	11686	18338;18339;18340	18339					0.12305265039231017
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.3284301757812	2	522.328611	1042.64267	-0.20206	-0.00010554	-0.010458	-5.4625E-06	-0.21252	-0.00011101	522.3284699178467	106.21	1.2384	106.08	105.64	106.88	-0.1238					118	46	4	0	0	0	0.013887	5	13218	13211;13218;13226;13234;13241		204.1	36.272	1	2168000			16578	18066	11665	11686	18341;18342;18343;18344;18345	18342					0.12305265039231017
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.3287963867188	2	522.328611	1042.64267	-0.87718	-0.00045818	0.72396	0.00037814	-0.15322	-8.0032E-05	522.3287828506047	106.26	1.1735	106.13	105.87	107.05	-0.1328					103	50	4	0	0	0	0.013333	3	13221	13221;13227;13233		176.41	37.585	1	1545600			16579	18066	11665	11686	18346;18347;18348	18346					0.12305265039231017
FLLPILSQI	9	Unmodified	_FLLPILSQI_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.3285522460938	2	522.328611	1042.64267	0.63852	0.00033352	-0.939	-0.00049047	-0.30048	-0.00015695	522.3279362032958	106.32	1.1915	106.15	105.79	106.98	-0.16132					118	53	4	0	0	0	0.013333	3	13216	13210;13216;13223		176.41	23.777	1	1721900			16580	18066	11665	11686	18349;18350;18351	18350					0.12305265039231017
FLLPTIFKS	9	Unmodified	_FLLPTIFKS_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2836303710938	2	533.320786	1064.62702	-0.30119	-0.00016063	-1.9665	-0.0010488	-2.2677	-0.0012094	533.3196034147074	106.38	0.40567	106.38	106.14	106.54	-0.0013123					20	11	2	0	0	0	0.024397	1	13598	13598		39.253	0	1	185660			16581	1686;4257	11666	11687	18352	18352					0.09728978522184661
FLLPVINEM	9	Unmodified	_FLLPVINEM_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7982788085938	2	538.296453	1074.57835	-0.65082	-0.00035033	0.31387	0.00016895	-0.33695	-0.00018138	538.2965539762878	97.128	0.97916	97.128	96.792	97.771	0					44	21	3	0	0	0	0.15029	1	12384	12384		99.375	11.621	1	399500			16582	8855	11667	11688	18353	18353					0.044047418907666724
FLLPVINEM	9	Unmodified	_FLLPVINEM_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.7985229492188	2	538.296453	1074.57835	0.27894	0.00015015	-0.7379	-0.00039721	-0.45896	-0.00024706	538.296095992317	97.125	1.1085	97.125	96.749	97.857	-3.0518E-05					39	24	2	0	0	0	0.12602	1	12318	12318		104.75	3.4939	1	445830			16583	8855	11667	11688	18354	18354					0.044047418907666724
FLLPVINEM	9	Unmodified	_FLLPVINEM_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.296453	1074.57835	0.047333	2.5479E-05	-0.51663	-0.0002781	-0.4693	-0.00025262	538.296177226241	97.041	0.93182	97.05	96.707	97.639	0.0089111	0.045074	-0.0001221	NaN	104.75	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423690			16584	8855	11667	11688							0.044047418907666724
FLLPVINEM	9	Unmodified	_FLLPVINEM_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.296453	1074.57835	0.51717	0.00027839	-1.4117	-0.00075991	-0.89452	-0.00048152	538.2955680600704	97.016	1.0321	96.879	96.391	97.423	-0.1367	-0.1261	-0.0010857	NaN	104.75	33	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85704			16585	8855	11667	11688							0.044047418907666724
FLLPVINEM	9	Unmodified	_FLLPVINEM_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.296453	1074.57835	0.60018	0.00032308	-1.0913	-0.00058745	-0.49112	-0.00026437	538.2956932751082	96.967	0.53503	96.844	96.528	97.063	-0.12368	-0.16149	-0.00074079	NaN	104.75	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103030			16586	8855	11667	11688							0.044047418907666724
FLLQDQELL	9	Unmodified	_FLLQDQELL_					0	0	0		ENSG00000166220|ENST00000456372|TBATA;nc|ENSG00000166220|Q96M53|TBATA;nc|ENSG00000166220|Q96M53-2|TBATA	ENSG00000166220|ENST00000456372|TBATA	ENSG00000166220|ENST00000456372|TBATA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8101196289062	2	559.808239	1117.60193	0.48254	0.00027013	0.63869	0.00035755	1.1212	0.00062768	559.8083726438451	82.851	0.56256	82.631	82.434	82.997	-0.22015					35	12	4	0	0	0	0.18915	1	9970	9970		90.777	0.40684	1	1094500			16587	7525	11668	11689	18355	18355					0.047828789289496854
FLLQDTVEL	9	Unmodified	_FLLQDTVEL_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.2957153320312	2	539.294965	1076.57538	-0.13913	-7.503E-05	-1.0471	-0.00056472	-1.1863	-0.00063975	539.2940417069799	87.547	1.189	87.512	87.236	88.425	-0.035355					78	28	4	0	0	0	0.03666	2	10992	10992;11004		136.27	10.454	1	2215700			16588	695	11669	11690	18356;18357	18356					0.04015190037625871
FLLQDTVEL	9	Unmodified	_FLLQDTVEL_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.2964477539062	2	539.294965	1076.57538	0.17714	9.5529E-05	-1.1828	-0.00063786	-1.0056	-0.00054233	539.2939028209901	87.588	1.1502	87.608	87.347	88.497	0.019333					71	27	4	0	0	0	0.020687	2	10962	10950;10962		148.99	19.365	1	2272200			16589	695	11669	11690	18358;18359	18359					0.04015190037625871
FLLQDTVEL	9	Unmodified	_FLLQDTVEL_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2951049804688	2	539.294965	1076.57538	-0.49213	-0.0002654	-0.11206	-6.0436E-05	-0.60419	-0.00032584	539.2946175074579	87.608	1.0112	87.429	87.112	88.123	-0.17874					59	24	4	0	0	0	0.062622	2	10653	10643;10653		124.08	27.89	1	1205400			16590	695	11669	11690	18360;18361	18361					0.04015190037625871
FLLQDTVEL	9	Unmodified	_FLLQDTVEL_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2958374023438	2	539.294965	1076.57538	0.10041	5.4148E-05	-0.70503	-0.00038022	-0.60463	-0.00032607	539.2943240781929	87.542	0.88828	87.406	87.178	88.067	-0.13613					52	21	4	0	0	0	0.020687	2	10672	10660;10672		148.99	23.173	1	1277600			16591	695	11669	11690	18362;18363	18363					0.04015190037625871
FLLQKYKT	8	Unmodified	_FLLQKYKT_					0	0	0		ENST00000358901.10_1_9:35056923-35057088:-|nuORF	ENST00000358901.10_1_9:35056923-35057088:-|nuORF	ENST00000358901.10_1_9:35056923-35057088:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.29248046875	2	520.810585	1039.60662	-0.072067	-3.7533E-05	3.3937	0.0017675	3.3217	0.00173	520.8123138157227	73.222	0.44785	72.951	72.719	73.167	-0.27126					24	10	3	0	0	0	0.027866	1	8906	8906		30.504	7.4612	1	294620			16592	12726	11670	11691	18364	18364					0.08839807862364069
FLLQSLEDL	9	Unmodified	_FLLQSLEDL_					0	0	0		nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2958984375	2	539.294965	1076.57538	-0.82797	-0.00044652	0.57244	0.00030872	-0.25552	-0.0001378	539.294992537547	87.602	1.1527	87.465	87.122	88.274	-0.13734					72	27	4	0	0	0	0.10174	1	10636	10636		110.12	0.64154	1	1051500			16593	3879	11671	11692	18365	18365					0.040151900376031335
FLLRKFML	8	Unmodified	_FLLRKFML_					0	0	0		ENST00000607957.1_1_7:123389962-123390058:+|nuORF	ENST00000607957.1_1_7:123389962-123390058:+|nuORF	ENST00000607957.1_1_7:123389962-123390058:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7875366210938	2	534.325348	1066.63614	-0.53816	-0.00028755	3.1471	0.0016816	2.6089	0.001394	534.3269058671669	73.834	1.3975	73.563	73.167	74.565	-0.27126					55	34	3	0	0	0	0.027866	1	9047	9047		28.254	0	1	1969300			16594	17584	11672	11693	18366	18366					0.10549048606867473
FLLRKFML	8	Unmodified	_FLLRKFML_					0	0	0		ENST00000607957.1_1_7:123389962-123390058:+|nuORF	ENST00000607957.1_1_7:123389962-123390058:+|nuORF	ENST00000607957.1_1_7:123389962-123390058:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7886962890625	2	534.325348	1066.63614	-0.80505	-0.00043016	3.3744	0.001803	2.5693	0.0013729	534.3270272818046	73.535	1.0872	73.544	73.181	74.268	0.0096512					57	26	4	0	0	0	0.027866	1	8965	8965		52.299	15.271	1	2238300			16595	17584	11672	11693	18367	18367					0.10549048606867473
FLLRTPPAS	9	Unmodified	_FLLRTPPAS_					0	0	0			REV__ENST00000289081.7_1_9:97861422-97861515:-|nuORF	REV__ENST00000289081.7_1_9:97861422-97861515:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.290283203125	2	501.292559	1000.57057	-0.41083	-0.00020595	-3.9929	-0.0020016	-4.4037	-0.0022075	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	0.67687	1	10511	10511		47.657	1.6851	1	2038300	+		16596	29930	11673	11694	18368	18368					0.07030350685511166
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7894287109375	2	494.789318	987.564084	0.67145	0.00033222	-1.1015	-0.00054501	-0.43006	-0.00021279	494.78847282340365	88.492	1.311	88.492	88.044	89.355	0					67	30	4	0	0	0	0.15889	1	11146	11146		97.473	33.265	1	1579400			16597	10420	11674	11695	18369	18369					0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.78961181640625	2	494.789318	987.564084	0.66532	0.00032919	-1.2095	-0.00059846	-0.5442	-0.00026927	494.7884529949755	88.467	1.1826	88.439	87.968	89.151	-0.027657					65	27	4	0	0	0	0.15889	2	11116	11105;11116		97.473	28.988	1	1659000			16598	10420	11674	11695	18370;18371	18371					0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7894287109375	2	494.789318	987.564084	0.53426	0.00026434	-1.2144	-0.00060085	-0.6801	-0.00033651	494.7883866842281	88.526	1.0243	88.544	88.153	89.177	0.018547					64	23	4	0	0	0	0.25032	2	11071	11071;11087		82.305	24.494	1	1675000			16599	10420	11674	11695	18372;18373	18372					0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7893371582031	2	494.789318	987.564084	0.071552	3.5403E-05	-0.07951	-3.9341E-05	-0.0079581	-3.9376E-06	494.78906360629463	88.405	0.83376	88.268	87.901	88.735	-0.13744					34	19	2	0	0	0	0.43973	1	10768	10768		63.306	26.86	1	417180			16600	10420	11674	11695	18374	18374					0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.789318	987.564084	-0.65917	-0.00032615	1.0831	0.00053591	0.42393	0.00020976	494.7896121022721	88.463	0.86833	88.293	87.931	88.799	-0.17053	-0.10546	0.0012315	NaN	97.473	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460280			16601	10420	11674	11695							0.06980412734139918
FLLSEPVAL	9	Unmodified	_FLLSEPVAL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.789318	987.564084	0.12917	6.3913E-05	0.026363	1.3044E-05	0.15554	7.6957E-05	494.7891737843541	88.485	0.78983	88.354	87.993	88.783	-0.13135	-0.044652	0.00018581	NaN	97.473	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443820			16602	10420	11674	11695							0.06980412734139918
FLLSILIAW	9	Unmodified	_FLLSILIAW_					0	0	0		ENST00000512286.1_1_4:25750049-25759447:-|nuORF;nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	ENST00000512286.1_1_4:25750049-25759447:-|nuORF	ENST00000512286.1_1_4:25750049-25759447:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.27880859375	2	538.331153	1074.64775	-0.26927	-0.00014496	-3.8297	-0.0020616	-4.0989	-0.0022066	538.3290932502297	84.523	0.71645	84.385	84.151	84.868	-0.13789					31	16	3	0	0	0	0.024487	1	10252	10252		31.955	2.7848	1	268390			16603	1962	11675	11696	18375	18375					0.11341568901843857
FLLSSQVGL	9	Unmodified	_FLLSSQVGL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2789611816406	2	482.279118	962.543683	-0.083779	-4.0405E-05	0.25924	0.00012503	0.17546	8.4621E-05	482.2791046379828	82.345	1.3142	82.345	81.909	83.223	0					67	30	4	0	0	0	0.10174	1	10265	10265		110.12	13.929	1	1677500			16604	6197	11676	11697	18376	18376					0.06091242074330694
FLLSSQVGL	9	Unmodified	_FLLSSQVGL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2789001464844	2	482.279118	962.543683	1.3729	0.0006621	-1.1708	-0.00056464	0.20209	9.7464E-05	482.2784234556435	82.43	1.4023	82.319	81.921	83.323	-0.11006					70	32	4	0	0	0	0.12602	1	10242	10242		104.75	8.5561	1	1435300			16605	6197	11676	11697	18377	18377					0.06091242074330694
FLLSSQVGL	9	Unmodified	_FLLSSQVGL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2792053222656	2	482.279118	962.543683	-0.47865	-0.00023084	0.63003	0.00030385	0.15138	7.3008E-05	482.2792951774891	82.312	1.7218	82.337	81.619	83.341	0.025711					76	40	4	0	0	0	0.082191	1	10176	10176		116.9	20.713	1	2107800			16606	6197	11676	11697	18378	18378					0.06091242074330694
FLLSSQVGL	9	Unmodified	_FLLSSQVGL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.279052734375	2	482.279118	962.543683	0.82112	0.00039601	-0.74021	-0.00035699	0.080914	3.9023E-05	482.2786301015552	82.285	0.86443	82.065	81.701	82.565	-0.22015					50	19	4	0	0	0	0.23085	1	9905	9905		84.916	2.6105	1	939890			16607	6197	11676	11697	18379	18379					0.06091242074330694
FLLSTKLDL	9	Unmodified	_FLLSTKLDL_					0	0	0		ENST00000578137.5_1_17:61864524-61869872:+|nuORF	ENST00000578137.5_1_17:61864524-61869872:+|nuORF	ENST00000578137.5_1_17:61864524-61869872:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2852172851562	2	525.3157	1048.61685	-0.38181	-0.00020057	0.29304	0.00015394	-0.088766	-4.663E-05	525.3156852857807	65.912	0.44981	65.67	65.457	65.907	-0.24145					20	10	2	0	0	0	0.018452	1	7565	7565		122.18	19.403	1	339800			16608	17126	11677	11698	18380	18380					0.09448370796940253
FLLSYGVWL	9	Unmodified	_FLLSYGVWL_					0	0	0			REV__ENSG00000197565|ENST00000334504|COL4A6	REV__ENSG00000197565|ENST00000334504|COL4A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3023681640625	2	549.305136	1096.59572	-0.55003	-0.00030213	-3.5921	-0.0019732	-4.1422	-0.0022753	549.3031405933436	78.762	1.7147	78.762	78.363	80.078	0					126	40	6	0	0	0	0.55828	1	9826	9826		55.504	6.0627	1	13542000	+		16609	28319	11678	11699	18381	18381					0.051284054880852636
FLLTPPPVLL	10	Unmodified	_FLLTPPPVLL_					0	0	0			REV__ENST00000311661.4_2_17:77020401-77042770:+|nuORF	REV__ENST00000311661.4_2_17:77020401-77042770:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.3536987304688	2	555.352086	1108.68962	-0.21036	-0.00011683	2.8947	0.0016076	2.6843	0.0014908	555.353605243723	99.586	0.64217	99.596	99.268	99.91	0.010231					45	14	4	0	0	0	1.089	1	12733	12733		34.173	6.2903	1	1220000	+		16610	30212	11679	11700	18382	18382					0.13962124590375424
FLLVLLRR	8	Unmodified	_FLLVLLRR_					0	0	0			REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.282470703125	2	515.350212	1028.68587	-0.70047	-0.00036099	0.97283	0.00050135	0.27236	0.00014036	515.3504812987896	65.234	0.23739	65.272	65.117	65.355	0.037384					10	6	2	0	0	0	0.027866	1	7649	7649		13.775	0	1	290240	+		16611	25188	11680	11701	18383	18383					0.17267499607191894
FLLVNHPKL	9	Unmodified	_FLLVNHPKL_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8312377929688	2	540.831852	1079.64915	-0.96111	-0.0005198	0.027839	1.5056E-05	-0.93328	-0.00050475	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.80658	1	9343	9343		38.806	6.8513	1	94452000	+		16612	28078	11681	11702	18384	18384					0.11251202990615639
FLLVNLAILII	11	Unmodified	_FLLVNLAILII_					0	0	0			REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.4223022460938	2	621.415217	1240.81588	0.70227	0.0004364	-0.55471	-0.00034471	0.14756	9.1697E-05	621.4145528634162	107.12	0.39978	107.12	106.95	107.35	0					18	9	3	0	0	0	1.0614	1	13752	13752		21.96	0	1	116590	+		16613	20853	11682	11703	18385	18385					0.20510631095658027
FLLVTYFV	8	Unmodified	_FLLVTYFV_					0	0	0			REV__OR6B3|p.A254V|1|0.27|ENSG00000178586|chr2:240045312-240045312|G/A|missense_variant	REV__OR6B3|p.A254V|1|0.27|ENSG00000178586|chr2:240045312-240045312|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2917785644531	2	501.288954	1000.56336	0.31679	0.0001588	2.8068	0.001407	3.1236	0.0015658	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.88442	1	10492	10492		52.299	2.8576	1	1878500	+		16614	37325	11683	11704	18386	18386					0.06309618085083457
FLLVVLDKV	9	Unmodified	_FLLVVLDKV_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7719116210938	2	523.336436	1044.65832	-0.58055	-0.00030382	0.28492	0.00014911	-0.29563	-0.00015472	523.3364174561395	72.576	0.62099	72.576	72.373	72.994	0					33	14	3	0	0	0	0.024539	1	8816	8816		20.947	0	1	320280	+		16615	20984	11684	11705	18387	18387					0.13777551556268008
FLLVVLFGF	9	Unmodified	_FLLVVLFGF_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7999877929688	2	527.820421	1053.62629	-0.11853	-6.2562E-05	-3.9061	-0.0020617	-4.0246	-0.0021243	527.818095092851	83.167	1.0235	83.029	82.523	83.547	-0.1386					29	21	2	0	0	0	0.024475	1	10063	10063		39.021	3.8208	1	165620	+		16616	33030	11685	11706	18388	18388					0.10162183873126196
FLLVVLFGF	9	Unmodified	_FLLVVLFGF_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	527.820421	1053.62629	-1.2734	-0.00067212	0.36285	0.00019152	-0.91055	-0.00048061	527.8189892772148	83.27	0.64045	83.27	82.965	83.605	0	0.12464	0.0043374	NaN	39.021	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105100	+		16617	33030	11685	11706							0.10162183873126196
FLLVVLFGF	9	Unmodified	_FLLVVLFGF_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	527.820421	1053.62629	0.22129	0.0001168	-3.6889	-0.0019471	-3.4676	-0.0018303	527.8181044867069	83.346	0.46817	83.256	83	83.469	-0.090454	0.10979	6.0255E-05	NaN	39.021	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123250	+		16618	33030	11685	11706							0.10162183873126196
FLLVVLFGF	9	Unmodified	_FLLVVLFGF_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	527.820421	1053.62629	-0.6144	-0.0003243	-1.2853	-0.00067842	-1.8997	-0.0010027	527.818408391549	83.193	0.5949	83.219	82.917	83.512	0.02655	0.073666	0.0025975	NaN	39.021	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92217	+		16619	33030	11685	11706							0.10162183873126196
FLLVVLFGF	9	Unmodified	_FLLVVLFGF_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.820421	1053.62629	0.41805	0.00022066	-4.351	-0.0022965	-3.9329	-0.0020759	527.8179179875507	83.166	0.64658	82.955	82.618	83.264	-0.21159	-0.19101	-0.00063873	NaN	39.021	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170660	+		16620	33030	11685	11706							0.10162183873126196
FLLWAPAL	8	Unmodified	_FLLWAPAL_					0	0	0		nc|ENSG00000118946|O14917-2|PCDH17;ENSG00000118946|ENST00000377918|PCDH17	nc|ENSG00000118946|O14917-2|PCDH17	nc|ENSG00000118946|O14917-2|PCDH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7777404785156	2	465.776014	929.537475	0.30012	0.00013979	3.0384	0.0014152	3.3385	0.001555	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0574	1	10008	10008		24.504	0	1	1281300			16621	3711	11686	11707	18389	18389					0.06988768633448217
FLLWNSLN	8	Unmodified	_FLLWNSLN_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.3052673339844	2	503.77146	1005.52837	0.39384	0.0001984	1.5775	0.0007947	1.9713	0.0009931	503.7709946062386	68.234	0.31151	68.252	68.08	68.391	0.018913					11	7	2	0	0	0	0.027866	1	8101	8101		57.811	3.0466	1	65467			16622	5206	11687	11708	18390	18390					0.02582375277143001
FLLWRHHA	8	Unmodified	_FLLWRHHA_					0	0	0			REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7787475585938	2	540.29851	1078.58247	-0.83084	-0.0004489	0.11692	6.3169E-05	-0.71392	-0.00038573	540.2984373576286	62.073	0.50796	61.847	61.611	62.119	-0.22663					22	13	2	0	0	0	0.027866	1	7202	7202		28.254	0	1	253830	+		16623	32120	11688	11709	18391	18391					0.046320122193719726
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(150)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.2904052734375	2	583.289159	1164.56377	-0.70495	-0.00041119	0.57584	0.00033588	-0.12911	-7.531E-05	583.289296259891	71.441	1.1493	71.441	71.223	72.373	0					71	29	4	0	0	0	0.016758	3	8662	8651;8662;8675		153.04	76.262	1	3074500			16624	1399	11689	11710	18392;18393;18394	18393		44			-0.0119333025738797
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(150)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.290771484375	2	583.289159	1164.56377	-0.46177	-0.00026935	0.23452	0.00013679	-0.22726	-0.00013256	583.2891267345971	71.834	1.6341	71.545	71.273	72.908	-0.28858					79	41	4	0	0	0	0.016758	3	8679	8666;8679;8692		153.04	70.795	1	3389100			16625	1399	11689	11710	18395;18396;18397	18396		44			-0.0119333025738797
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(170)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.2913818359375	2	583.289159	1164.56377	0.55777	0.00032534	-0.80655	-0.00047045	-0.24878	-0.00014511	583.2885358519766	71.551	1.6258	71.561	71.319	72.945	0.010735					83	41	4	0	0	0	0.014034	3	8614	8591;8604;8614		166.68	70.488	1	3521200			16626	1399	11689	11710	18398;18399;18400	18400		44			-0.0119333025738797
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(130)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.2911376953125	2	583.289159	1164.56377	0.017605	1.0269E-05	-0.44891	-0.00026185	-0.43131	-0.00025158	583.2888592619112	71.787	0.79967	71.512	71.314	72.113	-0.2751					43	19	3	0	0	0	0.03849	2	8388	8388;8399		134.81	53.389	1	973780			16627	1399	11689	11710	18401;18402	18401		44			-0.0119333025738797
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(150)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.2908935546875	2	583.289159	1164.56377	-0.53989	-0.00031491	0.080484	4.6946E-05	-0.45941	-0.00026797	583.2891670805213	71.732	0.72336	71.47	71.241	71.964	-0.26199					42	17	3	0	0	0	0.016758	2	8408	8396;8408		153.04	76.262	1	1181100			16628	1399	11689	11710	18403;18404	18404		44			-0.0119333025738797
FLMDFIHQV	9	Oxidation (M)	_FLM(Oxidation (M))DFIHQV_		FLM(1)DFIHQV		FLM(160)DFIHQV	0	0	1		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.2899169921875	2	583.289159	1164.56377	-0.17628	-0.00010282	-0.26393	-0.00015395	-0.44021	-0.00025677	583.2889556128868	71.606	0.84338	71.4	71.183	72.026	-0.20613					45	20	3	0	0	0	0.014988	2	8359	8359;8369		161.9	74.144	1	1305900			16629	1399	11689	11710	18405;18406	18405		44			-0.0119333025738797
FLMDFIHQV	9	Unmodified	_FLMDFIHQV_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.2919311523438	2	575.291702	1148.56885	-1.2499	-0.00071905	1.0189	0.00058616	-0.23099	-0.00013289	575.2921847224533	82.288	1.7397	82.288	81.909	83.649	0					97	40	4	0	0	0	0.014034	4	10271	10260;10271;10283;10296		166.68	81.763	1	2426900			16630	1399	11689	11711	18407;18408;18409;18410	18408					0.0005097360524359829
FLMDFIHQV	9	Unmodified	_FLMDFIHQV_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.29150390625	2	575.291702	1148.56885	1.3495	0.00077638	-1.6638	-0.00095719	-0.3143	-0.00018081	575.2906631091267	82.381	1.4446	82.271	81.921	83.365	-0.11006					87	33	4	0	0	0	0.013887	4	10237	10237;10247;10258;10279		180.93	72.838	1	2176500			16631	1399	11689	11711	18411;18412;18413;18414	18411					0.0005097360524359829
FLMDFIHQV	9	Unmodified	_FLMDFIHQV_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.2919921875	2	575.291702	1148.56885	-0.757	-0.0004355	0.60414	0.00034756	-0.15286	-8.794E-05	575.2918828725641	82.18	1.5688	82.205	81.899	83.468	0.025719					91	36	4	0	0	0	0.015841	3	10172	10172;10183;10195		211.39	97.977	1	2235700			16632	1399	11689	11711	18415;18416;18417	18415					0.0005097360524359829
FLMDFIHQV	9	Unmodified	_FLMDFIHQV_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.2916870117188	2	575.291702	1148.56885	0.52237	0.00030052	-0.99263	-0.00057105	-0.47026	-0.00027053	575.2910451024308	82.248	1.8515	82.028	81.616	83.468	-0.22015					109	42	4	0	0	0	0.013887	5	9884	9874;9884;9895;9908;9921		195.81	87.726	1	4366500			16633	1399	11689	11711	18418;18419;18420;18421;18422	18419					0.0005097360524359829
FLMDFIHQV	9	Unmodified	_FLMDFIHQV_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.291748046875	2	575.291702	1148.56885	-0.092651	-5.3301E-05	-0.45634	-0.00026253	-0.54899	-0.00031583	575.2913207600038	82.245	1.961	82.064	81.731	83.692	-0.18079					118	45	4	0	0	0	0.013887	5	9895	9895;9905;9915;9930;9943		180.93	93.172	1	4618400			16634	1399	11689	11711	18423;18424;18425;18426;18427	18423					0.0005097360524359829
FLMDFIHQV	9	Unmodified	_FLMDFIHQV_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.2915649414062	2	575.291702	1148.56885	-0.94424	-0.00054321	0.41999	0.00024162	-0.52424	-0.00030159	575.2918302002238	82.161	1.8036	82.021	81.701	83.504	-0.14014					109	41	3	0	0	0	0.014034	5	9867	9867;9876;9888;9901;9915		166.68	78.924	1	4419600			16635	1399	11689	11711	18428;18429;18430;18431;18432	18428					0.0005097360524359829
FLMENSSRQR	10	Unmodified	_FLMENSSRQR_					0	0	0		nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2-4|LOXHD1;nc|ENSG00000167210|Q8IVV2-5|LOXHD1;nc|ENSG00000167210|Q8IVV2-3|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5181884765625	3	423.211911	1266.6139	-0.24848	-0.00010516	0.83216	0.00035218	0.58368	0.00024702	423.5465149964292	30.997	0.33702	30.756	30.497	30.834	-0.24109					11	7	2	0	0	0	0.03519	1	2023	2023		36.318	5.2495	1	36637			16636	7660	11690	11712	18433	18433					-0.008738275995256117
FLMFFGRL	8	Oxidation (M)	_FLM(Oxidation (M))FFGRL_		FLM(1)FFGRL		FLM(75)FFGRL	0	0	1			REV__ENST00000465308.5_1_2:145275999-145277716:-|nuORF	REV__ENST00000465308.5_1_2:145275999-145277716:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3235473632812	2	523.778231	1045.54191	-0.56263	-0.00029469	2.3178	0.001214	1.7552	0.00091933	523.7793710812213	67.188	0.80611	66.905	66.629	67.435	-0.28294					35	19	3	0	0	0	0.027866	1	8034	8034		74.517	19.012	1	1789700	+		16637	32999	11691	11713	18434	18434		904			0.02095909784725336
FLMFGDLDS	9	Unmodified	_FLMFGDLDS_					0	0	0		ENSG00000171505|ENST00000304880|OR1N1	ENSG00000171505|ENST00000304880|OR1N1	ENSG00000171505|ENST00000304880|OR1N1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3281860351562	2	522.738968	1043.46338	0.45491	0.0002378	3.9808	0.0020809	4.4358	0.0023187	522.7405366751406	71.958	2.2768	71.67	70.589	72.866	-0.28858					85	57	2	0	0	0	0.024	1	8789	8789		55.504	0	1	345010			16638	8164	11692	11714	18435	18435					-0.056609873110119224
FLMKSQIKM	9	Oxidation (M)	_FLMKSQIKM(Oxidation (M))_		FLMKSQIKM(1)		FLM(-56)KSQIKM(56)	0	0	1			REV__ENST00000568107.2_1_16:81388019-81388070:+|nuORF	REV__ENST00000568107.2_1_16:81388019-81388070:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.3106689453125	2	571.309038	1140.60352	0.53111	0.00030343	1.8503	0.0010571	2.3814	0.0013605	571.3100493049693	74.596	2.0118	74.413	73.827	75.839	-0.18279					149	49	5	0	0	0	0.19099	1	8764	8764		90.37	17.491	2	34654000	+		16639	35335	11693	11715	18436	18436		954			0.0388447342170366
FLMVGRNQL	9	Unmodified	_FLMVGRNQL_					0	0	0		ENST00000229214.8_1_12:75902094-75905340:-|nuORF	ENST00000229214.8_1_12:75902094-75905340:-|nuORF	ENST00000229214.8_1_12:75902094-75905340:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.3195190429688	2	539.297319	1076.58008	-0.41616	-0.00022444	-1.3375	-0.00072129	-1.7536	-0.00094572	539.2966499972629	60.506	2.1352	60.3	59.289	61.424	-0.20599					85	53	2	0	0	0	0.024412	1	6878	6878		31.955	0	1	1012400			16640	11224	11694	11716	18437	18437					0.04485795699406481
FLNCYLFI	8	Unmodified	_FLNCYLFI_					0	0	0		ENST00000341181.10_2_3:98234611-98234746:-|nuORF	ENST00000341181.10_2_3:98234611-98234746:-|nuORF	ENST00000341181.10_2_3:98234611-98234746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.28173828125	2	516.764789	1031.51502	0.23316	0.00012049	-0.7617	-0.00039362	-0.52854	-0.00027313	516.764175271532	74.804	0.52701	74.804	74.509	75.036	0					28	12	3	0	0	0	0.027866	1	9152	9152		74.517	8.6191	1	244160			16641	12487	11695	11717	18438	18438					0.0005280117352413072
FLNDEVWNL	9	Unmodified	_FLNDEVWNL_					0	0	0		ENSG00000205758|ENST00000381554|CRYZL1;ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF	ENSG00000205758|ENST00000381554|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.8427734375	2	575.282389	1148.55022	-0.64686	-0.00037213	0.29657	0.00017061	-0.35029	-0.00020152	575.2822905493541	88.912	1.3385	88.912	88.597	89.936	0					74	31	4	0	0	0	0.01791	1	11214	11214		127.46	23.405	1	1083200			16642	10444	11696	11718	18439	18439					-0.01810864764956932
FLNDEVWNL	9	Unmodified	_FLNDEVWNL_					0	0	0		ENSG00000205758|ENST00000381554|CRYZL1;ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF	ENSG00000205758|ENST00000381554|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.8431396484375	2	575.282389	1148.55022	0.67508	0.00038836	-1.0614	-0.00061058	-0.38628	-0.00022222	575.2815015112283	88.875	1.3921	88.853	88.482	89.874	-0.021645					63	32	4	0	0	0	0.024025	1	11155	11155		71.877	13.648	1	1046800			16643	10444	11696	11718	18440	18440					-0.01810864764956932
FLNDEVWNL	9	Unmodified	_FLNDEVWNL_					0	0	0		ENSG00000205758|ENST00000381554|CRYZL1;ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF	ENSG00000205758|ENST00000381554|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.843017578125	2	575.282389	1148.55022	-0.092644	-5.3297E-05	-0.16288	-9.3699E-05	-0.25552	-0.000147	575.2820605646502	88.95	1.1766	88.965	88.667	89.843	0.015907					61	27	4	0	0	0	0.023837	1	11141	11141		64.207	9.431	1	896760			16644	10444	11696	11718	18441	18441					-0.01810864764956932
FLNDEVWNL	9	Unmodified	_FLNDEVWNL_					0	0	0		ENSG00000205758|ENST00000381554|CRYZL1;ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF	ENSG00000205758|ENST00000381554|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8428344726562	2	575.282389	1148.55022	-0.50348	-0.00028965	0.25754	0.00014816	-0.24594	-0.00014149	575.2823239908391	88.969	1.5075	88.799	88.421	89.928	-0.17053					93	35	4	0	0	0	0.022832	1	10822	10822		93.195	15.878	1	1292800			16645	10444	11696	11718	18442	18442					-0.01810864764956932
FLNDEVWNL	9	Unmodified	_FLNDEVWNL_					0	0	0		ENSG00000205758|ENST00000381554|CRYZL1;ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF	ENSG00000205758|ENST00000381554|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.281982421875	2	575.282389	1148.55022	-0.37527	-0.00021589	0.1848	0.00010631	-0.19047	-0.00010958	575.2823241766525	88.935	1.7161	88.803	88.486	90.202	-0.13135					95	40	4	0	0	0	0.013065	1	10860	10860		171.53	42.111	1	1615200			16646	10444	11696	11718	18443	18443					-0.01810864764956932
FLNDEVWNL	9	Unmodified	_FLNDEVWNL_					0	0	0		ENSG00000205758|ENST00000381554|CRYZL1;ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF	ENSG00000205758|ENST00000381554|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.2811889648438	2	575.282389	1148.55022	-0.045696	-2.6288E-05	-0.2115	-0.00012168	-0.2572	-0.00014796	575.2820822959274	88.987	1.4743	88.85	88.524	89.998	-0.13761					76	34	4	0	0	0	0.03666	1	10844	10844		136.27	37.639	1	1444100			16647	10444	11696	11718	18444	18444					-0.01810864764956932
FLNGEVIRL	9	Unmodified	_FLNGEVIRL_					0	0	0		nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.8118896484375	2	530.811116	1059.60768	-0.74834	-0.00039723	0.55555	0.00029489	-0.19279	-0.00010233	530.8113766316361	68.458	0.99258	68.458	68.102	69.094	0					65	24	4	0	0	0	0.20652	1	8216	8216		88.177	2.8175	1	2408700			16648	1483;15114	11697	11719	18445	18445					0.0802602223127451
FLNGEVIRL	9	Unmodified	_FLNGEVIRL_					0	0	0		nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8110961914062	2	530.811116	1059.60768	-1.0767	-0.00057152	0.7014	0.00037231	-0.37528	-0.00019921	530.8117551476237	68.765	0.86151	68.503	68.181	69.043	-0.26166					51	20	4	0	0	0	0.15388	2	7953	7953;7968		98.582	11.934	1	2070200			16649	1483;15114	11697	11719	18446;18447	18446					0.0802602223127451
FLNGEVIRL	9	Unmodified	_FLNGEVIRL_					0	0	0		nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8115844726562	2	530.811116	1059.60768	-0.12349	-6.5549E-05	-0.43017	-0.00022834	-0.55366	-0.00029389	530.8112607259369	68.692	0.81184	68.449	68.187	68.999	-0.24277					44	19	4	0	0	0	0.094442	2	7963	7951;7963		112.41	24.714	1	2515200			16650	1483;15114	11697	11719	18448;18449	18449					0.0802602223127451
FLNGEVIRL	9	Unmodified	_FLNGEVIRL_					0	0	0		nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10;ENST00000477706.1_1_X:53458354-53459024:-|nuORF	nc|ENSG00000072506|Q99714-2|HSD17B10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8118286132812	2	530.811116	1059.60768	0.19069	0.00010122	-0.36619	-0.00019438	-0.17551	-9.3161E-05	530.8111153104244	68.638	1.1778	68.408	67.917	69.095	-0.23048					73	28	4	0	0	0	0.20652	1	7946	7946		88.177	26.07	1	2277800			16651	1483;15114	11697	11719	18450	18450					0.0802602223127451
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7960815429688	2	525.795132	1049.57571	-0.83205	-0.00043749	0.22536	0.00011849	-0.60669	-0.000319	525.7950969381463	52.093	1.1997	52.093	51.702	52.901	0					65	31	4	0	0	0	0.14181	2	5566	5566;5578		101.25	24.406	1	2697900			16652	3418	11698	11720	18451;18452	18451					0.05290609757457787
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.7957153320312	2	525.795132	1049.57571	-0.28557	-0.00015015	-0.22375	-0.00011764	-0.50932	-0.0002678	525.7948363321065	52.192	1.0294	52.044	51.577	52.606	-0.14735					61	27	4	0	0	0	0.10464	2	5561	5561;5572		109.48	34.435	1	3020500			16653	3418	11698	11720	18453;18454	18453					0.05290609757457787
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7953491210938	2	525.795132	1049.57571	-0.56625	-0.00029773	0.14224	7.4791E-05	-0.42401	-0.00022294	525.7950421756289	51.926	1.0605	52.018	51.649	52.71	0.091942					62	27	4	0	0	0	0.32064	1	5480	5480		72.879	17.375	1	1995100			16654	3418	11698	11720	18455	18455					0.05290609757457787
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2938842773438	2	525.795132	1049.57571	-0.65294	-0.00034331	0.87815	0.00046173	0.22521	0.00011841	525.7953723811213	52.067	0.64162	51.948	51.719	52.361	-0.11875					26	16	3	0	0	0	0.024418	1	5413	5413		45.972	30.33	1	826560			16655	3418	11698	11720	18456	18456					0.05290609757457787
FLNMPGDAPI	10	Unmodified	_FLNMPGDAPI_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7969970703125	2	537.76806	1073.52157	-0.34993	-0.00018818	-2.1238	-0.0011421	-2.4738	-0.0013303	538.268369495155	77.569	0.20372	77.569	77.469	77.672	0					6	4	2	0	0	0	0.03519	1	9587	9587		44.377	1.5129	1	61109			16656	2000	11699	11721	18457	18457					-0.01225305665752785
FLNNPLMAF	9	Unmodified	_FLNNPLMAF_					0	0	0		ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI	ENSG00000173611|ENST00000336505|SCAI	ENSG00000173611|ENST00000336505|SCAI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7572631835938	2	533.773145	1065.53174	-0.22015	-0.00011751	0.99015	0.00052851	0.77	0.00041101	534.2753778574768	58.774	0.36486	58.593	58.426	58.791	-0.18133					19	8	3	0	0	0	0.024466	1	6486	6486		25.45	0	1	202840			16657	8391	11700	11722	18458	18458					0.0015930205947825016
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.2896118164062	2	570.290214	1138.56587	-0.40931	-0.00023343	1.282	0.00073113	0.87273	0.00049771	570.2906364605019	73.608	2.0883	73.608	73.254	75.343	0					130	51	3	0	0	0	0.013094	4	8984	8975;8984;8993;9016		171.38	69.784	1	13801000			16658	3431	11701	11723	18459;18460;18461;18462	18460					0.0021342175209611014
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.286865234375	2	570.290214	1138.56587	-0.1418	-8.0868E-05	1.2837	0.00073207	1.1419	0.0006512	570.2906283128372	73.897	2.2434	73.626	73.277	75.52	-0.27126					134	56	3	0	0	0	0.01452	6	8980	8980;8989;8999;9011;9021;9037		190.52	68.342	1	12716000			16659	3431	11701	11723	18463;18464;18465;18466;18467;18468	18463					0.0021342175209611014
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.289794921875	2	570.290214	1138.56587	-1.0338	-0.00058957	2.1683	0.0012366	1.1345	0.000647	570.2910902557245	73.543	2.3208	73.552	73.217	75.538	0.0096512					146	57	4	0	0	0	0.013094	6	8895	8895;8906;8918;8928;8939;8955		171.38	59.385	1	12882000			16660	3431	11701	11723	18469;18470;18471;18472;18473;18474	18469					0.0021342175209611014
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.2894897460938	2	570.290214	1138.56587	0.012103	6.9023E-06	0.37283	0.00021262	0.38494	0.00021953	570.2903028842712	73.88	0.66428	73.603	73.133	73.798	-0.2769					42	17	4	0	0	0	0.12602	2	8687	8687;8698		104.75	32.869	1	1568100			16661	3431	11701	11723	18475;18476	18475					0.0021342175209611014
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.2904663085938	2	570.290214	1138.56587	0.0064405	3.6729E-06	-0.23479	-0.0001339	-0.22835	-0.00013022	570.2900626286273	73.688	1.008	73.498	72.675	73.683	-0.19026					43	24	3	0	0	0	0.20967	2	8665	8665;8675		87.754	23.547	1	1685200			16662	3431	11701	11723	18477;18478	18477					0.0021342175209611014
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	570.290214	1138.56587	-0.037685	-2.1491E-05	0.30033	0.00017128	0.26265	0.00014979	570.2903150734486	73.842	0.70317	73.577	73.058	73.761	-0.26479	-0.00031727	-0.00068785	NaN	171.38	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1504700			16663	3431	11701	11723							0.0021342175209611014
FLNTCLLNV	9	Unmodified	_FLNTCLLNV_					0	0	0		nc|ENSG00000113494|P16471-2|PRLR	nc|ENSG00000113494|P16471-2|PRLR	nc|ENSG00000113494|P16471-2|PRLR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7784423828125	2	518.778428	1035.5423	-0.30504	-0.00015825	1.644	0.00085288	1.339	0.00069463	518.7792233294289	85.788	0.67728	85.73	85.603	86.28	-0.057617					24	15	2	0	0	0	0.5973	1	10751	10751		52.937	0	1	1412800			16664	18184	11702	11724	18479	18479					0.02595284713925139
FLNVNANYVT	10	Unmodified	_FLNVNANYVT_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	577.2996215820312	2	577.795663	1153.57677	0.099372	5.7417E-05	-4.3703	-0.0025251	-4.2709	-0.0024677	578.295330309966	61.72	0.61429	61.493	61.189	61.803	-0.22663					24	15	2	0	0	0	0.03519	1	7130	7130		66.429	15.094	1	182420	+		16665	36888	11703	11725	18480	18480					0.0061282412636956
FLNYMRRTT	9	Unmodified	_FLNYMRRTT_					0	0	0			REV__ENSG00000130766|ENST00000253063|SESN2	REV__ENSG00000130766|ENST00000253063|SESN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5148620605469	3	401.209731	1200.60736	0.99257	0.00039823	3.0816	0.0012364	4.0741	0.0016346	401.21037973600994	24.082	0.3037	23.903	23.782	24.086	-0.17857					8	6	2	0	0	0	0.024484	1	1036	1036		30.318	0	1	38073	+		16666	23153	11704	11726	18481	18481					0.015082792397834055
FLPDEKYGC	9	Unmodified	_FLPDEKYGC_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.247314453125	2	536.244418	1070.47428	-0.020473	-1.0978E-05	4.4593	0.0023913	4.4388	0.0023803	536.2466895998014	70.114	2.1538	70.114	69.75	71.904	0					81	57	2	0	0	0	0.90698	1	8467	8467		31.955	1.4512	1	5560700			16667	5772	11705	11727	18482	18482					-0.05813584936731786
FLPDPSALQNL	11	Unmodified	_FLPDPSALQNL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	607.82421875	2	607.824421	1213.63429	-0.39758	-0.00024166	0.70691	0.00042968	0.30933	0.00018802	607.824656594407	86.028	1.3576	85.983	85.616	86.973	-0.045105					70	31	4	0	0	0	0.50263	1	10765	10765		76.17	14.062	1	582400			16668	6638	11706	11728	18483	18483					0.03601666331951492
FLPDPSALQNL	11	Unmodified	_FLPDPSALQNL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	607.824421	1213.63429	-0.30199	-0.00018356	0.77936	0.00047372	0.47737	0.00029016	607.8246855372869	86.065	1.1927	86.065	85.748	86.941	0	0.086188	-0.00060532	NaN	76.17	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659360			16669	6638	11706	11728							0.03601666331951492
FLPDPSALQNL	11	Unmodified	_FLPDPSALQNL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	607.824421	1213.63429	-1.9768	-0.0012015	2.1656	0.0013163	0.18885	0.00011479	607.8256184301863	86.002	1.1066	86.026	85.657	86.763	0.023666	0.047151	0.0010799	NaN	76.17	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595270			16670	6638	11706	11728							0.03601666331951492
FLPDPSALQNL	11	Unmodified	_FLPDPSALQNL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	607.824421	1213.63429	-0.66243	-0.00040264	0.76161	0.00046293	0.099186	6.0288E-05	607.8245316802363	86.156	0.65408	85.969	85.644	86.298	-0.18696	-0.0098413	-0.0006269	NaN	76.17	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72471			16671	6638	11706	11728							0.03601666331951492
FLPDPSALQNL	11	Unmodified	_FLPDPSALQNL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	607.824421	1213.63429	0.34654	0.00021064	-0.58144	-0.00035341	-0.2349	-0.00014278	607.8236324452636	86.034	0.60918	85.89	85.623	86.232	-0.14455	-0.08904	-0.0022596	NaN	76.17	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75527			16672	6638	11706	11728							0.03601666331951492
FLPDPSALQNL	11	Unmodified	_FLPDPSALQNL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	607.824421	1213.63429	0.020165	1.2257E-05	-0.22197	-0.00013492	-0.2018	-0.00012266	607.8238609088643	86.078	0.47901	85.941	85.745	86.224	-0.13734	-0.038127	-0.0018226	NaN	76.17	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75268			16673	6638	11706	11728							0.03601666331951492
FLPEAFDFI	9	Unmodified	_FLPEAFDFI_					0	0	0		ENST00000485594.1_1_1:161088576-161089334:+|nuORF;NIT1|p.R93Hfs*46|1|0.03|ENSG00000158793|chr1:161119312-161119345|CGGGACCCTGCAGAGACGCTACACCTGTCTGAAC/-|frameshift_variant;ENST00000491497.1_1_1:161088534-161089257:+|nuORF;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;nc|ENSG00000158793|Q86X76-3|NIT1	ENST00000485594.1_1_1:161088576-161089334:+|nuORF	ENST00000485594.1_1_1:161088576-161089334:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.7789306640625	2	549.778951	1097.54335	-0.60847	-0.00033452	0.24425	0.00013428	-0.36422	-0.00020024	549.7793035231639	102.24	0.78764	102.24	101.91	102.69	0					57	17	4	0	0	0	0.17455	3	13094	13094;13106;13120		94.006	14.555	1	906480			16674	6702	11707	11729	18484;18485;18486	18484					-0.0015217764550925494
FLPEAFDFI	9	Unmodified	_FLPEAFDFI_					0	0	0		ENST00000485594.1_1_1:161088576-161089334:+|nuORF;NIT1|p.R93Hfs*46|1|0.03|ENSG00000158793|chr1:161119312-161119345|CGGGACCCTGCAGAGACGCTACACCTGTCTGAAC/-|frameshift_variant;ENST00000491497.1_1_1:161088534-161089257:+|nuORF;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;nc|ENSG00000158793|Q86X76-3|NIT1	ENST00000485594.1_1_1:161088576-161089334:+|nuORF	ENST00000485594.1_1_1:161088576-161089334:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7793579101562	2	549.778951	1097.54335	-0.54978	-0.00030226	0.098554	5.4183E-05	-0.45122	-0.00024807	549.7792660673218	102.17	0.88358	102.18	101.86	102.74	0.0073471					59	20	4	0	0	0	0.25032	2	13039	13039;13061		82.305	5.5309	1	844260			16675	6702	11707	11729	18487;18488	18487					-0.0015217764550925494
FLPEAFDFI	9	Unmodified	_FLPEAFDFI_					0	0	0		ENST00000485594.1_1_1:161088576-161089334:+|nuORF;NIT1|p.R93Hfs*46|1|0.03|ENSG00000158793|chr1:161119312-161119345|CGGGACCCTGCAGAGACGCTACACCTGTCTGAAC/-|frameshift_variant;ENST00000491497.1_1_1:161088534-161089257:+|nuORF;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;nc|ENSG00000158793|Q86X76-3|NIT1	ENST00000485594.1_1_1:161088576-161089334:+|nuORF	ENST00000485594.1_1_1:161088576-161089334:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.7787475585938	2	549.778951	1097.54335	-0.22807	-0.00012539	-0.4601	-0.00025295	-0.68818	-0.00037835	549.7790481038564	102.27	0.89803	102.26	101.93	102.83	-0.0054474					64	20	4	0	0	0	0.20967	3	13020	13007;13020;13032		87.754	31.033	1	800720			16676	6702	11707	11729	18489;18490;18491	18490					-0.0015217764550925494
FLPFHPSFIS	10	Unmodified	_FLPFHPSFIS_					0	0	0			REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|55|2|anti-sense	REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|55|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.7921752929688	2	596.313492	1190.61243	-0.68682	-0.00040956	-2.9317	-0.0017482	-3.6185	-0.0021578	596.3117436840128	66.356	0.46772	66.11	65.902	66.37	-0.24606					19	11	2	0	0	0	0.03519	1	7589	7589		15.642	0	1	217230	+		16677	37603	11708	11730	18492	18492					0.024749063740273414
FLPHHGLHL	9	Unmodified	_FLPHHGLHL_					0	0	0		ENST00000324607.7_1_6:20152917-20212568:-|nuORF	ENST00000324607.7_1_6:20152917-20212568:-|nuORF	ENST00000324607.7_1_6:20152917-20212568:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2670288085938	2	535.798343	1069.58213	-0.42125	-0.0002257	-3.2526	-0.0017427	-3.6738	-0.0019684	535.7955368764627	54.381	1.0388	54.232	53.782	54.821	-0.14897					59	29	3	0	0	0	0.024541	1	5975	5975		29.842	9.8448	1	1634600			16678	12257	11709	11731	18493	18493					0.050125924995199966
FLPHHGLHL	9	Unmodified	_FLPHHGLHL_					0	0	0		ENST00000324607.7_1_6:20152917-20212568:-|nuORF	ENST00000324607.7_1_6:20152917-20212568:-|nuORF	ENST00000324607.7_1_6:20152917-20212568:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.798343	1069.58213	-0.8336	-0.00044664	-3.3197	-0.0017787	-4.1533	-0.0022254	535.7956757279039	54.277	0.95863	54.277	53.799	54.757	0	0.04194	0.00010663	NaN	29.842	55	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1876200			16679	12257	11709	11731							0.050125924995199966
FLPHLRTV	8	Unmodified	_FLPHLRTV_					0	0	0			REV__ENST00000380860.8_1_5:68389907-68390036:+|nuORF	REV__ENST00000380860.8_1_5:68389907-68390036:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2736511230469	2	491.795269	981.575986	-0.16123	-7.9294E-05	0.61123	0.0003006	0.45	0.00022131	491.7959211538536	55.759	1.1237	55.603	55.16	56.284	-0.15601					50	30	2	0	0	0	0.027866	1	6203	6203		19.36	0	1	266610	+		16680	31500	11710	11732	18494	18494					0.08446074268010761
FLPIHPVAVQ	10	Unmodified	_FLPIHPVAVQ_					0	0	0			REV__nc|ENSG00000075426|P15408-2|FOSL2	REV__nc|ENSG00000075426|P15408-2|FOSL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.829345703125	2	560.829309	1119.64407	-0.011992	-6.7252E-06	-0.33787	-0.00018949	-0.34986	-0.00019621	560.8291278737865	72.251	0.70602	71.976	71.706	72.412	-0.27543					44	16	4	0	0	0	0.79525	1	8459	8459		60.972	2.19	1	1212900	+		16681	36470	11711	11733	18495	18495					0.08902899127997443
FLPLHDSLKLL	11	Unmodified	_FLPLHDSLKLL_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.5975646972656	3	432.595579	1294.76491	0.87254	0.00037745	3.988	0.0017252	4.8605	0.0021026	432.59715866374853	105.58	0.78917	105.42	104.98	105.77	-0.16282					65	27	5	0	0	0	1.0557	1	13139	13139		26.75	3.3718	1	1089400			16682	7493	11712	11734	18496	18496					0.12931682050793825
FLPLLGPL	8	Unmodified	_FLPLLGPL_					0	0	0		ENST00000476877.1_1_20:55746017-55748543:-|nuORF	REV__ENST00000422424.6_1_16:66966028-66966127:-|nuORF	REV__ENST00000422424.6_1_16:66966028-66966127:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.76123046875	2	435.278389	868.542226	-0.32555	-0.0001417	-2.6363	-0.0011475	-2.9619	-0.0012892	435.2771116970955	33.504	1.3444	33.511	32.928	34.272	0.0066261					62	35	3	0	0	0	0.027866	1	2512	2512		33.493	0	1	1054500			16683	15102	11713	11735	18497	18497					0.10269652776219118
FLPLLNQLQ	9	Unmodified	_FLPLLNQLQ_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2765502929688	2	543.321317	1084.62808	-0.44745	-0.00024311	2.8843	0.0015671	2.4369	0.001324	543.3225062879225	73.741	1.3137	73.465	72.411	73.724	-0.2769					50	31	3	0	0	0	0.024466	1	8571	8571		33.516	0	1	504750	+		16684	19695	11714	11736	18498	18498					0.08915192891072365
FLPLQADPE	9	Unmodified	_FLPLQADPE_					0	0	0		ACAD10|p.E721Q|1|0.32|ENSG00000111271|chr12:111746189-111746189|G/C|missense_variant	ACAD10|p.E721Q|1|0.32|ENSG00000111271|chr12:111746189-111746189|G/C|missense_variant	ACAD10|p.E721Q|1|0.32|ENSG00000111271|chr12:111746189-111746189|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2659912109375	2	515.266207	1028.51786	0.091092	4.6937E-05	3.7937	0.0019548	3.8848	0.0020017	515.2681139684792	74.181	0.66747	73.922	73.701	74.368	-0.25887					38	15	3	0	0	0	0.17822	1	9036	9036		93.195	8.2799	1	2608200			16685	13	11715	11737	18499	18499					0.004743478320506256
FLPLRFLDP	9	Unmodified	_FLPLRFLDP_					0	0	0		ENST00000272227.7_1_2:10933301-10937275:-|nuORF	ENST00000272227.7_1_2:10933301-10937275:-|nuORF	ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8319091796875	2	559.32386	1116.63317	0.46488	0.00026002	-4.2631	-0.0023845	-3.7983	-0.0021245	559.321376096884	72.642	1.1994	72.361	71.92	73.119	-0.28124					48	29	3	0	0	0	0.024374	1	8864	8864		49.442	5.3247	1	2008000			16686	11650	11716	11738	18500	18500					0.07951496753685205
FLPLRLVSV	9	Unmodified	_FLPLRLVSV_					0	0	0			REV__ENST00000340934.9_1_1:222886159-222886273:+|nuORF	REV__ENST00000340934.9_1_1:222886159-222886273:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3330078125	2	522.334227	1042.6539	-0.30072	-0.00015708	-1.6237	-0.00084813	-1.9244	-0.0010052	522.3336328123478	83.532	1.1592	83.441	82.958	84.117	-0.090454					87	26	5	0	0	0	0.62163	1	10416	10416		51.335	1.8939	1	1281300	+		16687	30625	11717	11739	18501	18501					0.13428087133388544
FLPLVVLVL	9	Unmodified	_FLPLVVLVL_					0	0	0		ENSG00000126246|ENST00000246532|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7928161621094	2	506.843897	1011.67324	-0.87694	-0.00044447	-3.438	-0.0017425	-4.3149	-0.002187	506.84200217131485	75.866	0.37387	75.866	75.659	76.032	0					11	9	2	0	0	0	0.023868	1	9326	9326		49.211	19.369	1	74069			16688	4188	11718	11740	18502	18502					0.16787043424267267
FLPPAQVTV	9	Unmodified	_FLPPAQVTV_					0	0	0		nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;nc|ENSG00000165271|Q9H6R4-3|NOL6;ENST00000464829.5_1_9:33469994-33473843:-|nuORF	nc|ENSG00000165271|Q9H6R4-2|NOL6	nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.28094482421875	2	486.28166	970.548768	0.62672	0.00030476	-0.070945	-3.4499E-05	0.55577	0.00027026	486.28145515413115	70.131	0.68952	69.838	69.348	70.038	-0.29291					35	16	4	0	0	0	0.17455	1	8451	8451		94.006	3.0674	1	900170			16689	7388	11719	11741	18503	18503					0.062315459369415294
FLPPPFPPP	9	Unmodified	_FLPPPFPPP_					0	0	0		ENST00000469669.5_1_22:29688055-29696148:+|nuORF;ENST00000400979.2_1_1:166244929-166246012:-|nuORF;ENST00000479135.5_1_22:29687437-29696148:+|nuORF;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.78094482421875	2	504.781296	1007.54804	-0.6766	-0.00034154	0.31945	0.00016125	-0.35715	-0.00018028	504.7814243166515	83.194	1.7654	83.194	82.492	84.258	0					140	40	4	0	0	0	0.14584	3	10390	10378;10390;10408		100.36	31.875	1	1211400			16690	9178	11720	11742	18504;18505;18506	18505					0.04456751287898442
FLPPPFPPP	9	Unmodified	_FLPPPFPPP_					0	0	0		ENST00000469669.5_1_22:29688055-29696148:+|nuORF;ENST00000400979.2_1_1:166244929-166246012:-|nuORF;ENST00000479135.5_1_22:29687437-29696148:+|nuORF;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7808532714844	2	504.781296	1007.54804	0.40931	0.00020661	-0.7398	-0.00037344	-0.33049	-0.00016683	504.78083967608376	83.256	2.0166	83.166	82.229	84.246	-0.090446					140	46	4	0	0	0	0.32257	1	10372	10372		72.62	12.216	1	1267000			16691	9178	11720	11742	18507	18507					0.04456751287898442
FLPPPFPPP	9	Unmodified	_FLPPPFPPP_					0	0	0		ENST00000469669.5_1_22:29688055-29696148:+|nuORF;ENST00000400979.2_1_1:166244929-166246012:-|nuORF;ENST00000479135.5_1_22:29687437-29696148:+|nuORF;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.78082275390625	2	504.781296	1007.54804	-0.62778	-0.00031689	-0.10538	-5.3195E-05	-0.73316	-0.00037009	504.78108916623665	83.229	2.5142	83.256	81.82	84.334	0.02655					184	58	5	0	0	0	0.22343	4	10301	10290;10301;10314;10328		85.909	23.409	1	1160300			16692	9178	11720	11742	18508;18509;18510;18511	18509					0.04456751287898442
FLPPPFPPP	9	Unmodified	_FLPPPFPPP_					0	0	0		ENST00000469669.5_1_22:29688055-29696148:+|nuORF;ENST00000400979.2_1_1:166244929-166246012:-|nuORF;ENST00000479135.5_1_22:29687437-29696148:+|nuORF;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7810974121094	2	504.781296	1007.54804	0.64053	0.00032333	-0.85732	-0.00043276	-0.21679	-0.00010943	504.7807421577058	83.174	1.7156	82.963	82.487	84.202	-0.21159					111	39	4	0	0	0	0.22343	2	10025	10025;10036		85.909	25.506	1	600670			16693	9178	11720	11742	18512;18513	18512					0.04456751287898442
FLPPPFPPP	9	Unmodified	_FLPPPFPPP_					0	0	0		ENST00000469669.5_1_22:29688055-29696148:+|nuORF;ENST00000400979.2_1_1:166244929-166246012:-|nuORF;ENST00000479135.5_1_22:29687437-29696148:+|nuORF;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7811279296875	2	504.781296	1007.54804	-0.34178	-0.00017252	0.12398	6.2585E-05	-0.21779	-0.00010994	504.781197252097	83.105	1.6277	82.967	82.436	84.063	-0.1386					98	37	4	0	0	0	0.32257	1	10028	10028		72.62	23.409	1	470630			16694	9178	11720	11742	18514	18514					0.04456751287898442
FLPPPFPPP	9	Unmodified	_FLPPPFPPP_					0	0	0		ENST00000469669.5_1_22:29688055-29696148:+|nuORF;ENST00000400979.2_1_1:166244929-166246012:-|nuORF;ENST00000479135.5_1_22:29687437-29696148:+|nuORF;nc|ENSG00000182944|Q01844-2|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	ENST00000469669.5_1_22:29688055-29696148:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	504.781296	1007.54804	0.29685	0.00014984	-0.41776	-0.00021088	-0.12091	-6.1033E-05	504.78090528830603	83.096	1.6215	82.926	82.561	84.182	-0.16915	-0.15213	-0.00010079	NaN	100.36	95	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625210			16695	9178	11720	11742							0.04456751287898442
FLPPVAAAAA	10	Unmodified	_FLPPVAAAAA_					0	0	0			REV__ENST00000284268.6_1_5:14871746-14871875:-|nuORF	REV__ENST00000284268.6_1_5:14871746-14871875:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.26690673828125	2	464.268553	926.522553	-0.088617	-4.1142E-05	-4.2095	-0.0019544	-4.2982	-0.0019955	464.26650566657827	42.695	1.0789	42.695	42.289	43.367	0					63	29	3	0	0	0	1.0111	2	3952	3952;3964		44.531	7.372	1	3649900	+		16696	29907	11721	11743	18515;18516	18515					0.056352767654516356
FLPPVSRWFPG	11	Unmodified	_FLPPVSRWFPG_					0	0	0			REV__ENST00000458098.5_1_2:7001504-7005415:-|nuORF	REV__ENST00000458098.5_1_2:7001504-7005415:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.54119873046875	3	434.904636	1301.69208	0.74383	0.00032349	0.69508	0.00030229	1.4389	0.00062579	435.2390962177892	20.704	0.59195	20.508	20.236	20.828	-0.19577					14	11	2	0	0	0	0.024845	1	551	551		14.694	4.5898	1	15968	+		16697	32819	11722	11744	18517	18517					0.053299730480148355
FLPSYIIDV	9	Unmodified	_FLPSYIIDV_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.794921875	2	533.794601	1065.57465	-1.5754	-0.00084095	0.69841	0.00037281	-0.87702	-0.00046815	533.7946877989222	91.336	1.9135	91.336	91.011	92.924	0					94	45	4	0	0	0	0.022311	3	11558	11548;11558;11572		147.69	31.039	1	3598600			16698	1460	11723	11745	18518;18519;18520	18519					0.044483953885674055
FLPSYIIDV	9	Unmodified	_FLPSYIIDV_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7943725585938	2	533.794601	1065.57465	-0.73079	-0.00039009	-0.38606	-0.00020608	-1.1169	-0.00059617	533.7940691638897	91.337	1.8182	91.325	90.993	92.811	-0.012383					98	43	5	0	0	0	0.022311	5	11519	11514;11519;11531;11543;11569		147.69	35.469	1	3948500			16699	1460	11723	11745	18521;18522;18523;18524;18525	18522					0.044483953885674055
FLPSYIIDV	9	Unmodified	_FLPSYIIDV_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7940063476562	2	533.794601	1065.57465	-0.053454	-2.8533E-05	-0.96848	-0.00051697	-1.0219	-0.0005455	533.7937985370679	91.344	1.4335	91.356	91.114	92.548	0.011276					87	34	4	0	0	0	0.034181	3	11478	11478;11489;11501		138.24	13.648	1	4218500			16700	1460	11723	11745	18526;18527;18528	18526					0.044483953885674055
FLPSYIIDV	9	Unmodified	_FLPSYIIDV_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.794601	1065.57465	-0.093299	-4.9803E-05	-0.27821	-0.00014851	-0.37151	-0.00019831	533.7941265169616	91.312	1.0669	91.173	90.943	92.01	-0.13942	-0.071479	-0.00049578	NaN	147.69	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568320			16701	1460	11723	11745							0.044483953885674055
FLPTALTALPA	11	Unmodified	_FLPTALTALPA_					0	0	0			REV__ENST00000560079.6_1_15:85307958-85308030:+|nuORF	REV__ENST00000560079.6_1_15:85307958-85308030:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.8005981445312	2	557.828975	1113.6434	-0.11316	-6.3125E-05	0.020611	1.1498E-05	-0.092552	-5.1628E-05	557.8286906798761	86.904	0.63294	86.767	86.53	87.163	-0.13734					23	14	2	0	0	0	0.024738	1	10528	10528		26.693	3.6504	1	166960	+		16702	35133	11724	11746	18529	18529					0.09112059688254703
FLPTVVTYL	9	Unmodified	_FLPTVVTYL_					0	0	0			REV__ENSG00000204694|ENST00000377149|OR11A1	REV__ENSG00000204694|ENST00000377149|OR11A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8017578125	2	526.804968	1051.59538	-0.9052	-0.00047686	-3.2774	-0.0017265	-4.1826	-0.0022034	526.8031501488817	76.288	0.8439	76.288	75.956	76.799	0					54	20	3	0	0	0	0.43973	1	9385	9385		63.306	7.8021	1	3157600	+		16703	28633	11725	11747	18530	18530					0.07164985768213228
FLPVHLSPF	9	Unmodified	_FLPVHLSPF_					0	0	0		ENST00000477780.2_1_1:154247547-154247742:+|nuORF;ENST00000459914.1_1_1:154247547-154248174:+|nuORF	ENST00000477780.2_1_1:154247547-154247742:+|nuORF	ENST00000477780.2_1_1:154247547-154247742:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2830200195312	2	528.797478	1055.5804	-0.48781	-0.00025795	3.4012	0.0017985	2.9134	0.0015406	528.7989197717624	23.238	0.80729	23.314	22.84	23.647	0.076239					29	18	2	0	0	0	0.024412	1	865	865		40.573	0	1	81254			16704	14643	11726	11748	18531	18531					0.05483538690896239
FLPVLCSVSP	10	Unmodified	_FLPVLCSVSP_					0	0	0		ENSG00000185504|ENST00000327787|FAAP100;nc|ENSG00000185504|Q0VG06-3|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3067016601562	2	531.288628	1060.5627	0.27689	0.00014711	-2.2697	-0.0012059	-1.9928	-0.0010587	531.2876169581401	58.671	0.40392	58.762	58.486	58.89	0.091217					11	10	2	0	0	0	0.03519	1	6555	6555		63.306	22.528	1	314000			16705	9446	11727	11749	18532	18532					0.03484455373745732
FLPVRSVIGG	10	Unmodified	_FLPVRSVIGG_					0	0	0		nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7893676757812	2	522.813659	1043.61277	0.798	0.0004172	-0.91766	-0.00047977	-0.11966	-6.2561E-05	522.8120800218901	84.217	0.34771	84.058	83.888	84.236	-0.15868					12	7	2	0	0	0	0.03519	1	10179	10179		47.657	12.039	1	60151			16706	18078	11728	11750	18533	18533					0.09270326093906078
FLQAITVIN	9	Unmodified	_FLQAITVIN_					0	0	0			REV__ENST00000514473.2_1_14:22951844-22951934:-|nuORF	REV__ENST00000514473.2_1_14:22951844-22951934:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2762756347656	2	509.800217	1017.58588	-0.3446	-0.00017568	-0.53853	-0.00027454	-0.88314	-0.00045022	509.79979107000844	90.948	0.91612	90.935	90.617	91.533	-0.012383					44	21	3	0	0	0	0.023007	1	11508	11508		99.375	10.732	1	1886400	+		16707	34175	11729	11751	18534	18534					0.07779217482698186
FLQDLEQRL	9	Unmodified	_FLQDLEQRL_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19;ENST00000471928.1_1_1:16532424-16533472:-|nuORF;ENST00000478210.1_1_1:16531913-16532955:-|nuORF;ENST00000478117.5_1_1:16529010-16533481:-|nuORF	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.3162231445312	2	581.316763	1160.61897	-0.90037	-0.0005234	0.5315	0.00030897	-0.36886	-0.00021443	581.3169582214393	66.279	0.56895	66.279	65.95	66.519	0					39	18	3	0	0	0	0.080494	2	7878	7878;7899		117.53	15.925	1	3027200			16708	5580	11730	11752	18535;18536	18535					0.04508799534755781
FLQDLEQRL	9	Unmodified	_FLQDLEQRL_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19;ENST00000471928.1_1_1:16532424-16533472:-|nuORF;ENST00000478210.1_1_1:16531913-16532955:-|nuORF;ENST00000478117.5_1_1:16529010-16533481:-|nuORF	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.3173828125	2	581.316763	1160.61897	-0.95896	-0.00055746	0.53109	0.00030873	-0.42787	-0.00024873	581.3169392454014	66.63	1.6207	66.348	66.019	67.639	-0.28149					74	45	2	0	0	0	0.016953	3	7904	7896;7904;7912		152.06	29.885	1	3059300			16709	5580	11730	11752	18537;18538;18539	18538					0.04508799534755781
FLQDLEQRL	9	Unmodified	_FLQDLEQRL_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19;ENST00000471928.1_1_1:16532424-16533472:-|nuORF;ENST00000478210.1_1_1:16531913-16532955:-|nuORF;ENST00000478117.5_1_1:16529010-16533481:-|nuORF	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.317626953125	2	581.316763	1160.61897	-0.13728	-7.9805E-05	-0.45402	-0.00026393	-0.59131	-0.00034374	581.3164387008478	66.332	1.5595	66.363	66.159	67.718	0.030106					68	41	2	0	0	0	0.014478	4	7805	7805;7813;7820;7832		164.46	45.053	1	2605500			16710	5580	11730	11752	18540;18541;18542;18543	18540					0.04508799534755781
FLQDLEQRL	9	Unmodified	_FLQDLEQRL_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19;ENST00000471928.1_1_1:16532424-16533472:-|nuORF;ENST00000478210.1_1_1:16531913-16532955:-|nuORF;ENST00000478117.5_1_1:16529010-16533481:-|nuORF	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	581.316763	1160.61897	-0.32899	-0.00019125	-0.2316	-0.00013463	-0.56059	-0.00032588	581.3164441703967	66.632	0.38995	66.384	66.141	66.531	-0.2484	0.027784	-0.00063449	NaN	164.46	24	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1196700			16711	5580	11730	11752							0.04508799534755781
FLQDLEQRL	9	Unmodified	_FLQDLEQRL_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19;ENST00000471928.1_1_1:16532424-16533472:-|nuORF;ENST00000478210.1_1_1:16531913-16532955:-|nuORF;ENST00000478117.5_1_1:16529010-16533481:-|nuORF	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.316763	1160.61897	-1.302	-0.00075689	1.0078	0.00058587	-0.2942	-0.00017102	581.3173195945503	66.641	0.44854	66.417	66.066	66.514	-0.22374	0.06104	0.00080652	NaN	164.46	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1069200			16712	5580	11730	11752							0.04508799534755781
FLQDLEQRL	9	Unmodified	_FLQDLEQRL_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19;ENST00000471928.1_1_1:16532424-16533472:-|nuORF;ENST00000478210.1_1_1:16531913-16532955:-|nuORF;ENST00000478117.5_1_1:16529010-16533481:-|nuORF	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.316763	1160.61897	-0.92601	-0.0005383	0.35589	0.00020688	-0.57012	-0.00033142	581.3169815128068	66.59	0.46577	66.345	66.011	66.477	-0.24517	-0.011202	4.854E-05	NaN	164.46	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1095200			16713	5580	11730	11752							0.04508799534755781
FLQDTNTNAL	10	Unmodified	_FLQDTNTNAL_					0	0	0			REV__ENSG00000176566|ENST00000319675|DCAF4L2	REV__ENSG00000176566|ENST00000319675|DCAF4L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.78466796875	2	568.782753	1135.55095	-0.68431	-0.00038922	4.1656	0.0023693	3.4812	0.0019801	568.7850466868974	94.68	1.3222	94.68	94.283	95.605	0					81	30	4	0	0	0	0.47897	1	12030	12030		90.601	5.6853	1	4244300	+		16714	27031	11731	11753	18544	18544					-0.011400701159118398
FLQDTNTNAL	10	Unmodified	_FLQDTNTNAL_					0	0	0			REV__ENSG00000176566|ENST00000319675|DCAF4L2	REV__ENSG00000176566|ENST00000319675|DCAF4L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.7847290039062	2	568.782753	1135.55095	-0.193	-0.00010977	3.6551	0.002079	3.4621	0.0019692	568.784792679984	94.584	1.0297	94.584	94.228	95.258	-0.00023651					72	23	4	0	0	0	0.70466	1	12035	12035		66.962	2.7547	1	3919600	+		16715	27031	11731	11753	18545	18545					-0.011400701159118398
FLQDTNTNAL	10	Unmodified	_FLQDTNTNAL_					0	0	0			REV__ENSG00000176566|ENST00000319675|DCAF4L2	REV__ENSG00000176566|ENST00000319675|DCAF4L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.7838134765625	2	568.782753	1135.55095	-0.44492	-0.00025306	3.7395	0.002127	3.2946	0.0018739	568.784746181438	94.603	1.3822	94.465	94.213	95.595	-0.13779					55	31	4	0	0	0	0.86389	1	11679	11679		56.434	5.0983	1	501120	+		16716	27031	11731	11753	18546	18546					-0.011400701159118398
FLQDYTLLI	9	Unmodified	_FLQDYTLLI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.31298828125	2	563.313158	1124.61176	-0.55377	-0.00031194	0.40148	0.00022616	-0.15229	-8.5787E-05	563.3131753730619	96.79	1.1997	96.79	96.484	97.683	0					79	26	4	0	0	0	0.12602	3	12350	12340;12350;12365		104.75	16.992	1	619740			16717	4192;13980	11732	11754	18547;18548;18549	18548					0.054440669343193804
FLQDYTLLI	9	Unmodified	_FLQDYTLLI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.3128662109375	2	563.313158	1124.61176	0.33885	0.00019088	-0.6438	-0.00036266	-0.30494	-0.00017178	563.3125784994855	96.686	1.1939	96.693	96.353	97.547	0.0065002					75	26	3	0	0	0	0.033448	3	12299	12288;12299;12311		138.83	39.707	1	665770			16718	4192;13980	11732	11754	18550;18551;18552	18551					0.054440669343193804
FLQDYTLLI	9	Unmodified	_FLQDYTLLI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.3123168945312	2	563.313158	1124.61176	0.58837	0.00033144	-0.89718	-0.00050539	-0.3088	-0.00017395	563.312380866116	96.815	1.3744	96.815	96.44	97.815	-3.0518E-05					85	30	4	0	0	0	0.082191	1	12260	12260		116.9	12.157	1	749740			16719	4192;13980	11732	11754	18553	18553					0.054440669343193804
FLQDYTLLI	9	Unmodified	_FLQDYTLLI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	563.313158	1124.61176	0.62739	0.00035342	-1.0119	-0.00057004	-0.38454	-0.00021662	563.3123304874408	96.687	0.70634	96.55	96.263	96.969	-0.1367	-0.1076	-0.00051902	NaN	138.83	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140470			16720	4192;13980	11732	11754							0.054440669343193804
FLQDYTLLI	9	Unmodified	_FLQDYTLLI_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2;ENST00000420734.1_1_1:87510839-87511187:-|nuORF	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.313158	1124.61176	0.9061	0.00051042	-1.4728	-0.00082967	-0.56673	-0.00031925	563.31213693592	96.623	1.4727	96.499	95.771	97.244	-0.12305	-0.15812	-0.0010383	NaN	138.83	58	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210560			16721	4192;13980	11732	11754							0.054440669343193804
FLQEGDLISA	10	Unmodified	_FLQEGDLISA_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7802734375	2	546.782222	1091.54989	-0.37448	-0.00020476	-2.3816	-0.0013022	-2.7561	-0.001507	546.7802751882012	73.575	0.88219	73.298	72.842	73.724	-0.2769					49	20	3	0	0	0	0.082298	4	8643	8643;8655;8666;8680		140.11	52.416	1	9535500			16722	4444	11733	11755	18554;18555;18556;18557	18554					0.007777155151870829
FLQEGDLISA	10	Unmodified	_FLQEGDLISA_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.780517578125	2	546.782222	1091.54989	-0.49431	-0.00027028	-2.3538	-0.001287	-2.8481	-0.0015573	546.7802244724768	73.572	0.90877	73.307	72.852	73.761	-0.26479					50	22	3	0	0	0	0.03397	3	8670	8659;8670;8682		152.06	50.808	1	9415000			16723	4444	11733	11755	18558;18559;18560	18559					0.007777155151870829
FLQEGDLISA	10	Unmodified	_FLQEGDLISA_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7803344726562	2	546.782222	1091.54989	-0.64092	-0.00035044	-2.2913	-0.0012528	-2.9322	-0.0016033	546.7802462782352	73.41	0.96512	73.22	72.718	73.683	-0.19027					54	20	3	0	0	0	0.18296	5	8616	8616;8625;8637;8650;8663		123.21	29.357	1	8558000			16724	4444	11733	11755	18561;18562;18563;18564;18565	18561					0.007777155151870829
FLQEHNTTL	9	Unmodified	_FLQEHNTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.7796630859375	2	551.780013	1101.54547	-0.53781	-0.00029676	-0.49904	-0.00027536	-1.0369	-0.00057211	551.7798001447803	45.242	1.4086	45.242	44.934	46.343	0					116	40	6	0	0	0	0.094442	6	4382	4360;4370;4382;4394;4407;4421		112.41	19.012	1	19587000			16725	928	11734	11756	18566;18567;18568;18569;18570;18571	18568					-0.0012374890770843194
FLQEHNTTL	9	Unmodified	_FLQEHNTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.7799072265625	2	551.780013	1101.54547	-0.92569	-0.00051078	0.056779	3.1329E-05	-0.86891	-0.00047945	551.7800964391662	45.349	1.6885	45.2	44.866	46.554	-0.1488					112	48	5	0	0	0	0.11727	4	4388	4367;4376;4388;4412		106.68	21.802	1	20178000			16726	928	11734	11756	18572;18573;18574;18575	18574					-0.0012374890770843194
FLQEHNTTL	9	Unmodified	_FLQEHNTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.7799682617188	2	551.780013	1101.54547	-0.45289	-0.0002499	-0.52561	-0.00029002	-0.9785	-0.00053992	551.7797940920913	45.252	1.6421	45.295	44.93	46.572	0.043877					130	47	5	0	0	0	0.094442	5	4350	4303;4313;4325;4338;4350		112.41	13.498	1	20378000			16727	928	11734	11756	18576;18577;18578;18579;18580	18580					-0.0012374890770843194
FLQEHNTTL	9	Unmodified	_FLQEHNTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.7807006835938	2	551.780013	1101.54547	-0.094398	-5.2087E-05	-0.88975	-0.00049094	-0.98415	-0.00054303	551.7794702788838	45.493	1.3401	45.24	44.981	46.321	-0.25252					101	36	6	0	0	0	0.071379	3	4317	4306;4317;4332		120.87	21.493	1	10913000			16728	928	11734	11756	18581;18582;18583	18582					-0.0012374890770843194
FLQEHNTTL	9	Unmodified	_FLQEHNTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.7816162109375	2	551.780013	1101.54547	-0.60799	-0.00033547	-0.14454	-7.9752E-05	-0.75252	-0.00041523	551.7798536451703	45.448	1.5074	45.237	44.988	46.495	-0.21109					111	42	6	0	0	0	0.10464	2	4307	4295;4307		109.48	10.103	1	11345000			16729	928	11734	11756	18584;18585	18585					-0.0012374890770843194
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7820129394531	2	509.782025	1017.5495	-1.1702	-0.00059657	-0.049827	-2.5401E-05	-1.2201	-0.00062197	509.7818890467402	43.816	0.60928	43.816	43.511	44.12	0					53	16	4	0	0	0	0.086035	1	4127	4127		115.49	5.3742	1	4575800			16730	5667	11735	11757	18586	18586					0.04142340585997317
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.78143310546875	2	509.782025	1017.5495	-1.0419	-0.00053112	-0.30727	-0.00015664	-1.3491	-0.00068776	509.7818435827634	43.975	0.85206	43.83	43.279	44.131	-0.14471					58	23	4	0	0	0	0.053401	2	4138	4138;4149		127.46	14.05	1	4188600			16731	5667	11735	11757	18587;18588	18587					0.04142340585997317
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7816467285156	2	509.782025	1017.5495	-0.29326	-0.0001495	-0.77548	-0.00039533	-1.0687	-0.00054482	509.78150420247385	43.868	0.68097	43.899	43.522	44.203	0.030827					56	18	4	0	0	0	0.14024	1	4073	4073		101.6	10.824	1	4817600			16732	5667	11735	11757	18589	18589					0.04142340585997317
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.782025	1017.5495	-0.66059	-0.00033676	-0.27885	-0.00014215	-0.93944	-0.00047891	509.7817102341459	43.939	0.48588	43.834	43.544	44.03	-0.10468	-0.015881	5.4299E-05	NaN	127.46	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1639800			16733	5667	11735	11757							0.04142340585997317
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.782025	1017.5495	-1.1749	-0.00059896	0.58777	0.00029964	-0.58716	-0.00029932	509.78211323079995	44.117	0.66709	43.873	43.483	44.151	-0.2444	0.022682	0.00093788	NaN	127.46	33	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487900			16734	5667	11735	11757							0.04142340585997317
FLQEKSPAV	9	Unmodified	_FLQEKSPAV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.782025	1017.5495	-1.086	-0.0005536	0.26711	0.00013617	-0.81884	-0.00041743	509.7819919258933	44.068	0.61411	43.848	43.562	44.176	-0.21939	-0.001418	0.00061094	NaN	127.46	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1819100			16735	5667	11735	11757							0.04142340585997317
FLQEMIAI	8	Unmodified	_FLQEMIAI_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7623596191406	2	482.762246	963.50994	0.37097	0.00017909	-0.1437	-6.9372E-05	0.22727	0.00010972	482.7620442262988	87.344	2.5337	87.208	86.413	88.947	-0.13613					133	60	3	0	0	0	0.97924	1	10645	10645		40.573	0	1	754440			16736	9821	11736	11758	18590	18590					0.026724973109025996
FLQEQLVEL	9	Unmodified	_FLQEQLVEL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8091430664062	2	559.808239	1117.60193	-0.39937	-0.00022357	0.68058	0.000381	0.28122	0.00015743	559.8084236581117	82.817	0.5589	82.817	82.622	83.18	0					41	12	4	0	0	0	0.18994	1	10335	10335		90.601	2.9044	1	1241300			16737	5759	11737	11759	18591	18591					0.047828789289496854
FLQEQLVEL	9	Unmodified	_FLQEQLVEL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8087768554688	2	559.808239	1117.60193	1.1235	0.00062896	1.2046	0.00067435	2.3281	0.0013033	559.8096370947526	82.879	1.2842	82.769	82.509	83.793	-0.11006					63	29	4	0	0	0	0.10464	1	10314	10314		109.48	4.7318	1	1088200			16738	5759	11737	11759	18592	18592					0.047828789289496854
FLQEQLVEL	9	Unmodified	_FLQEQLVEL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8095092773438	2	559.808239	1117.60193	0.48254	0.00027013	0.63869	0.00035755	1.1212	0.00062768	559.8083726438451	82.851	0.56256	82.631	82.434	82.997	-0.22015					35	12	4	0	0	0	0.22379	1	9980	9980		85.862	3.1113	1	1094500			16739	5759	11737	11759	18593	18593					0.047828789289496854
FLQEQLVEL	9	Unmodified	_FLQEQLVEL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8095703125	2	559.808239	1117.60193	0.26317	0.00014733	0.88963	0.00049802	1.1528	0.00064535	559.8084649788664	82.838	0.38873	82.657	82.462	82.85	-0.18079					24	8	4	0	0	0	0.03666	2	9988	9988;10000		136.27	14.092	1	1234700			16740	5759	11737	11759	18594;18595	18594					0.047828789289496854
FLQEQLVEL	9	Unmodified	_FLQEQLVEL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8099975585938	2	559.808239	1117.60193	-0.59098	-0.00033084	2.3258	0.001302	1.7348	0.00097114	559.8088472148211	82.835	0.8622	82.694	82.434	83.296	-0.14014					42	19	5	0	0	0	0.22902	1	9963	9963		85.161	4.7062	1	1034100			16741	5759	11737	11759	18596	18596					0.047828789289496854
FLQEYGLSV	9	Unmodified	_FLQEYGLSV_					0	0	0		nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000562074.2_1_16:66839813-66842571:-|nuORF	nc|ENSG00000159593|Q13564-3|NAE1	nc|ENSG00000159593|Q13564-3|NAE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2747802734375	2	528.274032	1054.53351	-1.0385	-0.00054863	1.2141	0.00064138	0.17558	9.2753E-05	528.2743055038736	80.007	0.79926	80.007	79.616	80.415	0					43	18	4	0	0	0	0.2101	1	9942	9942		87.696	16.401	1	527840			16742	6755	11738	11760	18597	18597					0.008426343491009902
FLQEYGLSV	9	Unmodified	_FLQEYGLSV_					0	0	0		nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000562074.2_1_16:66839813-66842571:-|nuORF	nc|ENSG00000159593|Q13564-3|NAE1	nc|ENSG00000159593|Q13564-3|NAE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.274032	1054.53351	-1.3281	-0.00070158	1.0355	0.00054705	-0.29252	-0.00015453	528.2743919356363	80.221	0.58469	80.07	79.8	80.385	-0.15168	0.073316	0.00029934	NaN	87.696	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494230			16743	6755	11738	11760							0.008426343491009902
FLQEYGLSV	9	Unmodified	_FLQEYGLSV_					0	0	0		nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000562074.2_1_16:66839813-66842571:-|nuORF	nc|ENSG00000159593|Q13564-3|NAE1	nc|ENSG00000159593|Q13564-3|NAE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.274032	1054.53351	-0.47272	-0.00024973	0.35515	0.00018762	-0.11757	-6.2109E-05	528.2739467472005	79.993	0.71386	80.014	79.729	80.443	0.021439	0.017724	-0.00041952	NaN	87.696	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503530			16744	6755	11738	11760							0.008426343491009902
FLQEYGLSV	9	Unmodified	_FLQEYGLSV_					0	0	0		nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000562074.2_1_16:66839813-66842571:-|nuORF	nc|ENSG00000159593|Q13564-3|NAE1	nc|ENSG00000159593|Q13564-3|NAE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.274032	1054.53351	-0.016097	-8.5038E-06	-0.7467	-0.00039446	-0.7628	-0.00040297	528.2733675296896	80.113	0.45927	79.894	79.701	80.16	-0.21923	-0.10219	-0.0015837	NaN	87.696	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88025			16745	6755	11738	11760							0.008426343491009902
FLQEYVANL	9	Unmodified	_FLQEYVANL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.7872314453125	2	548.787307	1095.56006	-0.65849	-0.00036137	0.62318	0.00034199	-0.035309	-1.9377E-05	548.7874190850224	79.51	1.6621	79.51	79.16	80.822	0					73	39	4	0	0	0	0.015512	3	9849	9849;9862;9873		159.28	71.522	1	3117000			16746	1742	11739	11761	18598;18599;18600	18598					0.016103232404248047
FLQEYVANL	9	Unmodified	_FLQEYVANL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.7870483398438	2	548.787307	1095.56006	-1.6097	-0.00088341	1.6595	0.00091069	0.049713	2.7282E-05	548.7879631824109	79.635	1.5093	79.463	79.15	80.66	-0.17226					87	35	4	0	0	0	0.013924	4	9856	9832;9843;9856;9869		199.7	89.585	1	2888500			16747	1742	11739	11761	18601;18602;18603;18604	18603					0.016103232404248047
FLQEYVANL	9	Unmodified	_FLQEYVANL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.7872924804688	2	548.787307	1095.56006	-0.76064	-0.00041743	0.81918	0.00044955	0.058538	3.2125E-05	548.787435377452	79.481	1.6579	79.5	79.15	80.808	0.018669					96	39	4	0	0	0	0.012922	4	9786	9774;9786;9798;9810		172.25	82.313	1	2953900			16748	1742	11739	11761	18605;18606;18607;18608	18606					0.016103232404248047
FLQEYVANL	9	Unmodified	_FLQEYVANL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.787307	1095.56006	0.45925	0.00025203	1.053	0.00057789	1.5123	0.00082992	548.7872713477062	79.666	0.91988	79.42	78.987	79.907	-0.2465	-0.017233	-1.2537E-05	NaN	172.25	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432410			16749	1742	11739	11761							0.016103232404248047
FLQEYVANL	9	Unmodified	_FLQEYVANL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.787307	1095.56006	0.14352	7.8761E-05	0.52249	0.00028673	0.66601	0.0003655	548.7873539148576	79.595	1.083	79.375	78.832	79.915	-0.21923	-0.061491	-0.00059485	NaN	172.25	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377260			16750	1742	11739	11761							0.016103232404248047
FLQEYVANL	9	Unmodified	_FLQEYVANL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.787307	1095.56006	-0.039469	-2.166E-05	1.6308	0.00089495	1.5913	0.00087329	548.7874915209669	79.504	0.9648	79.354	79.026	79.99	-0.15051	-0.082916	0.00062158	NaN	172.25	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411880			16751	1742	11739	11761							0.016103232404248047
FLQFAAPKV	9	Unmodified	_FLQFAAPKV_					0	0	0		sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.31011962890625	2	510.797478	1019.5804	0.052948	2.7045E-05	-1.099	-0.00056135	-1.046	-0.0005343	510.7967768772228	75.422	0.84207	75.432	75.171	76.013	0.010368					46	22	3	0	0	0	0.024205	1	9218	9218		63.306	17.354	1	552480			16752	37948	11740	11762	18609	18609					0.07139538690887548
FLQGERKGQ	9	Unmodified	_FLQGERKGQ_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000115808|O43815-2|STRN;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000115808|O43815-2|STRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3165283203125	2	531.788173	1061.56179	0.19711	0.00010482	-0.48694	-0.00025895	-0.28982	-0.00015413	531.7871357551247	22.249	0.28552	22.06	21.816	22.102	-0.18894					6	5	2	0	0	0	0.024495	1	744	744		42.396	28.259	1	13076			16753	18192;9922;1928	11741	11763	18610	18610					0.03347377049021816
FLQGERKGQ	9	Unmodified	_FLQGERKGQ_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000115808|O43815-2|STRN;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000115808|O43815-2|STRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.788173	1061.56179	-1.0726	-0.00057039	1.2803	0.00068085	0.20771	0.00011046	531.7887373222203	22.364	0.27816	22.179	22.047	22.325	-0.18539	0.059315	0.00036593	NaN	34.173	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14769			16754	18192;9922;1928	11741	11763							0.03347377049021816
FLQGSAPLR	9	Unmodified	_FLQGSAPLR_					0	0	0		nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.299560546875	2	494.782359	987.550165	0.22214	0.00010991	-1.2598	-0.00062335	-1.0377	-0.00051344	494.7814724108708	100.9	0.62725	100.77	100.59	101.22	-0.13269					29	15	3	0	0	0	0.023635	1	12511	12511		66.429	16.988	1	326980			16755	18341	11742	11764	18611	18611					0.0558918002569726
FLQGSAPLR	9	Unmodified	_FLQGSAPLR_					0	0	0		nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.782359	987.550165	0.35834	0.0001773	-1.3583	-0.00067208	-0.99999	-0.00049478	494.78134354388146	100.84	0.46149	100.84	100.62	101.08	0	0.026566	1.2324E-05	NaN	66.429	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353600			16756	18341	11742	11764							0.0558918002569726
FLQGSAPLR	9	Unmodified	_FLQGSAPLR_					0	0	0		nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.782359	987.550165	0.29112	0.00014404	-1.5576	-0.00077065	-1.2664	-0.00062661	494.7814859902541	100.96	0.38535	100.95	100.72	101.11	-0.0054474	0.1389	-0.00018481	NaN	66.429	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265160			16757	18341	11742	11764							0.0558918002569726
FLQGSAPLR	9	Unmodified	_FLQGSAPLR_					0	0	0		nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.782359	987.550165	0.54858	0.00027143	-1.6663	-0.00082443	-1.1177	-0.00055301	494.78123949439447	100.82	0.44816	100.7	100.58	101.03	-0.12576	-0.11964	-0.00029238	NaN	66.429	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364620			16758	18341	11742	11764							0.0558918002569726
FLQGSAPLR	9	Unmodified	_FLQGSAPLR_					0	0	0		nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	nc|ENSG00000141756|Q96AY3-2|FKBP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.782359	987.550165	0.0854	4.2255E-05	-1.2276	-0.00060741	-1.1422	-0.00056515	494.78147839513616	100.97	0.44037	100.8	100.57	101.01	-0.17178	-0.016771	0.00014168	NaN	66.429	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240200			16759	18341	11742	11764							0.0558918002569726
FLQKGTTN	8	Unmodified	_FLQKGTTN_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.74462890625	2	454.745442	907.476331	0.47062	0.00021401	-1.899	-0.00086356	-1.4284	-0.00064954	454.74449165346823	101.24	1.4761	101.24	100.76	102.24	-0.0054474					99	33	4	0	0	0	1.043	1	12886	12886		30.504	1.3541	1	3938500	+		16760	20937	11743	11765	18612	18612					0.01889211863374385
FLQKQGSR	8	Unmodified	_FLQKQGSR_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;ENST00000552253.1_1_12:70986014-71031175:-|nuORF;ENST00000538174.6_1_12:70979073-71031175:-|nuORF	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.27685546875	2	482.272158	962.529764	-1.1302	-0.00054504	-0.088285	-4.2577E-05	-1.2184	-0.00058762	482.2718513617041	51.282	0.38853	51.369	51.189	51.577	0.087006					16	10	2	0	0	0	0.027866	1	5333	5333		38.806	0	1	412710			16761	4234	11744	11766	18613	18613					0.04700009365899405
FLQKSHLT	8	Unmodified	_FLQKSHLT_					0	0	0		nc|ENSG00000125846|P52736-3|ZNF133;nc|ENSG00000125846|P52736-4|ZNF133;nc|ENSG00000125846|P52736-2|ZNF133;ENSG00000125846|ENST00000425686|ZNF133;nc|ENSG00000125846|P52736-5|ZNF133	nc|ENSG00000125846|P52736-3|ZNF133	nc|ENSG00000125846|P52736-3|ZNF133	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2788391113281	2	487.276909	972.539266	2.7412	0.0013357	1.3207	0.00064356	4.0619	0.0019793	487.2774280538332	18.835	1.2397	18.593	18.224	19.464	-0.24256					43	24	4	0	0	0	0.89627	1	313	313		51.335	0	1	160080			16762	4151	11745	11767	18614	18614					0.0518977765142381
FLQLDFLY	8	Unmodified	_FLQLDFLY_					0	0	0		ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7787475585938	2	529.781493	1057.54843	-0.48699	-0.000258	-3.8243	-0.002026	-4.3113	-0.002284	529.7794735641246	63.592	1.6886	63.399	62.822	64.51	-0.19243					128	42	4	0	0	0	0.71717	1	7216	7216		65.897	0	1	21021000			16763	12655	11746	11768	18615	18615					0.021961262170862028
FLQLDNKEG	9	Unmodified	_FLQLDNKEG_					0	0	0			REV__ENST00000369798.6_1_6:80750412-80752022:+|nuORF	REV__ENST00000369798.6_1_6:80750412-80752022:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3165283203125	2	532.274564	1062.53457	0.19444	0.0001035	-0.99308	-0.00052859	-0.79864	-0.00042509	532.273738692074	22.172	0.3322	21.983	21.769	22.102	-0.18894					10	6	2	0	0	0	0.024374	1	744	744		49.442	8.6634	1	51223	+		16764	31102	11747	11769	18616	18616					0.0058084871798200766
FLQLNAQNV	9	Unmodified	_FLQLNAQNV_					0	0	0			REV__ENST00000561681.5_1_16:58540839-58541769:+|nuORF	REV__ENST00000561681.5_1_16:58540839-58541769:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3265991210938	2	523.785099	1045.55564	-0.93196	-0.00048815	2.6781	0.0014028	1.7461	0.0009146	523.7865788472999	67.076	0.77594	67.076	66.714	67.49	0					14	9	2	0	0	0	0.023817	1	7993	7993		82.305	22.187	1	214920	+		16765	21346	11748	11770	18617	18617					0.03468858817495857
FLQLPLWL	8	Unmodified	_FLQLPLWL_					0	0	0			REV__ENST00000490035.6_1_3:116164120-116164264:-|nuORF	REV__ENST00000490035.6_1_3:116164120-116164264:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2282104492188	2	515.310221	1028.60589	-0.20181	-0.000104	-0.30929	-0.00015938	-0.5111	-0.00026338	515.3100281846047	61.567	1.2879	61.353	60.764	62.052	-0.21375					59	31	2	0	0	0	0.027866	1	6986	6986		65.897	44.195	1	1090300	+		16766	33691	11749	11771	18618	18618					0.0927301321332834
FLQLQNQLV	9	Unmodified	_FLQLQNQLV_					0	0	0		chr2:215064219-215111597|421|19.09|0.64|4.91|-|0|ABCA12,ABCA12|1	chr2:215064219-215111597|421|19.09|0.64|4.91|-|0|ABCA12,ABCA12|1	chr2:215064219-215111597|421|19.09|0.64|4.91|-|0|ABCA12,ABCA12|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3154296875	2	551.816399	1101.61824	-0.57454	-0.00031704	3.4987	0.0019306	2.9241	0.0016136	552.3218025636295	72.476	1.2102	72.278	71.585	72.795	-0.1981					61	28	6	0	0	0	0.024466	1	8503	8503		42.474	0.078325	1	548520			16767	376	11750	11772	18619	18619					0.07150004885670569
FLQLVFIF	8	Unmodified	_FLQLVFIF_					0	0	0			REV__ENSG00000213853|ENST00000359543|EMP2	REV__ENSG00000213853|ENST00000359543|EMP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7926635742188	2	513.804771	1025.59499	0.20528	0.00010547	-3.7231	-0.001913	-3.5178	-0.0018075	513.8026701354771	71.807	0.76519	71.545	71.322	72.087	-0.26199					27	18	2	0	0	0	0.027866	1	8438	8438		49.211	20.957	1	263280	+		16768	28752	11751	11773	18620	18620					0.08321610839016103
FLQLVFPK	8	Unmodified	_FLQLVFPK_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2766418457031	2	496.302396	990.590239	-0.8023	-0.00039818	3.7799	0.001876	2.9776	0.0014778	496.30440294325615	84.024	1.2633	83.951	83.743	85.007	-0.072769					52	29	2	0	0	0	0.027866	1	10624	10624		50.025	30.665	1	183990	+		16769	24332	11752	11774	18621	18621					0.09456726696271289
FLQNLKSL	8	Unmodified	_FLQNLKSL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.7882995605469	2	481.78711	961.559667	0.063424	3.0557E-05	0.30239	0.00014569	0.36582	0.00017625	481.7870464978411	31.284	0.87846	31.043	30.453	31.332	-0.24109					43	21	4	0	0	0	0.6248	1	2064	2064		73.975	5.1879	1	1149300			16770	8735	11753	11775	18622	18622					0.07734948311224343
FLQNLKSL	8	Unmodified	_FLQNLKSL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.7877197265625	2	481.78711	961.559667	-0.075046	-3.6156E-05	0.12707	6.122E-05	0.052023	2.5064E-05	481.7869634475914	31.234	0.89621	31.081	30.846	31.742	-0.15231					44	22	3	0	0	0	0.35998	1	2039	2039		102.77	5.3007	1	1165200			16771	8735	11753	11775	18623	18623					0.07734948311224343
FLQNTTDFL	9	Unmodified	_FLQNTTDFL_					0	0	0			REV__nc|ENSG00000119682|O15033-2|AREL1	REV__nc|ENSG00000119682|O15033-2|AREL1	MSMS	OPSCC_40_ClassI_Rep-3	6	549.779052734375	2	549.776939	1097.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.13	1	101.96	101.46	102.46	-0.17178								0	0	0	0.48579	1	12672	12672		54.776	3.4409	1		+		16772	22473	11754	11776	18624	18624					-0.0055426713927317905
FLQNVLFLM	9	Unmodified	_FLQNVLFLM_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.300537109375	2	562.81227	1123.60999	-1.1034	-0.000621	3.0723	0.0017291	1.9689	0.0011081	562.8141509232795	83.311	0.42319	83.337	83.046	83.469	0.026558					11	9	2	0	0	0	0.024541	1	10297	10297		20.482	0	1	66950	+		16773	22882	11755	11777	18625	18625					0.05312734644712691
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8312377929688	2	543.831517	1085.64848	-0.00066161	-3.598E-07	-0.58164	-0.00031632	-0.58231	-0.00031668	543.8311734462246	71.321	0.84317	71.321	71.026	71.869	0					74	21	5	0	0	0	0.056725	5	8627	8627;8637;8649;8661;8673		126.24	0	1	12522000			16774	1392	11756	11778	18626;18627;18628;18629;18630	18626					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8307495117188	2	543.831517	1085.64848	-0.13409	-7.2924E-05	-0.4777	-0.00025979	-0.61179	-0.00033271	543.8312334210917	71.7	0.87441	71.411	71.074	71.949	-0.28857					74	22	5	0	0	0	0.034407	6	8660	8638;8648;8660;8674;8685;8703		138.06	0	1	12426000			16775	1392	11756	11778	18631;18632;18633;18634;18635;18636	18633					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8312377929688	2	543.831517	1085.64848	-0.59023	-0.00032099	-0.016848	-9.1627E-06	-0.60708	-0.00033015	543.8314915007242	71.441	0.86495	71.452	71.124	71.989	0.010735					68	22	4	0	0	0	0.056725	5	8570	8559;8570;8582;8596;8607		126.24	5.4162	1	14190000			16776	1392	11756	11778	18637;18638;18639;18640;18641	18638					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.8320922851562	2	543.831517	1085.64848	-0.093556	-5.0879E-05	-0.10808	-5.8777E-05	-0.20164	-0.00010966	543.8313107157397	71.608	0.81389	71.333	71.056	71.87	-0.27509					55	19	4	0	0	0	0.11727	3	8360	8351;8360;8374		106.68	0	1	3148200			16777	1392	11756	11778	18642;18643;18644	18643					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8314819335938	2	543.831517	1085.64848	-0.075724	-4.1181E-05	-0.12558	-6.8292E-05	-0.2013	-0.00010947	543.8313094737792	71.554	0.76807	71.292	71.033	71.801	-0.26199					53	18	4	0	0	0	0.12933	2	8370	8359;8370		104.01	0	1	2760700			16778	1392	11756	11778	18645;18646	18646					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8317260742188	2	543.831517	1085.64848	-0.037365	-2.032E-05	-0.22949	-0.00012481	-0.26686	-0.00014513	543.8312635394142	71.452	0.81666	71.246	70.964	71.78	-0.20613					58	19	4	0	0	0	0.094442	2	8338	8326;8338		112.41	0	1	2982900			16779	1392	11756	11778	18647;18648	18648					0.10908363550902322
FLQQFVASEA	10	Unmodified	_FLQQFVASEA_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2906494140625	2	570.290214	1138.56587	-0.037685	-2.1491E-05	0.30033	0.00017128	0.26265	0.00014979	570.2903150734486	73.842	0.70317	73.577	73.058	73.761	-0.26479					42	17	4	0	0	0	1.0393	1	8721	8721		40.778	1.972	1	1504700	+		16780	22949	11757	11779	18649	18649					0.002134217521188475
FLQQNALPLF	10	Unmodified	_FLQQNALPLF_					0	0	0			REV__ENSG00000188807|ENST00000340381|TMEM201	REV__ENSG00000188807|ENST00000340381|TMEM201	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.3447265625	2	595.832049	1189.64954	-0.27319	-0.00016277	-2.9156	-0.0017372	-3.1888	-0.0019	595.8300551198284	72.136	0.45052	71.874	71.679	72.13	-0.26199					16	10	2	0	0	0	0.03519	1	8432	8432		44.117	0	1	146200	+		16781	28067	11758	11780	18650	18650					0.06230577919791358
FLQRERKGQ	9	Unmodified	_FLQRERKGQ_					0	0	0		STRN|p.G86R|1|0.05|ENSG00000115808|chr2:36925187-36925187|C/T|missense_variant	STRN|p.G86R|1|0.05|ENSG00000115808|chr2:36925187-36925187|C/T|missense_variant	STRN|p.G86R|1|0.05|ENSG00000115808|chr2:36925187-36925187|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.3292236328125	2	581.327996	1160.64144	0.18245	0.00010606	1.6102	0.00093604	1.7926	0.0010421	581.3288739671503	71.248	2.4397	70.959	70.633	73.073	-0.28858					162	61	5	0	0	0	0.30449	1	8627	8627		75.043	4.6447	1	18266000			16782	37976	11759	11781	18651	18651					0.06754443723048098
FLRALRVF	8	Unmodified	_FLRALRVF_					0	0	0			REV__ENSG00000106246|ENST00000292478|PTCD1	REV__ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2632141113281	2	511.318912	1020.62327	0.56955	0.00029122	-1.7575	-0.00089862	-1.1879	-0.0006074	511.3177220035492	84.027	0.64402	83.815	83.558	84.202	-0.21159					35	14	3	0	0	0	0.027866	1	10150	10150		20.482	0	1	85200	+		16783	21602	11760	11782	18652	18652					0.11378353538975716
FLRFPLSP	8	Unmodified	_FLRFPLSP_					0	0	0		nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	nc|ENSG00000118971|P30279-2|CCND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7827453613281	2	488.78437	975.554188	-0.8946	-0.00043727	-3.9882	-0.0019494	-4.8828	-0.0023866	488.7823563953132	40.535	1.7231	40.558	39.807	41.53	0.023006					129	48	5	0	0	0	0.43637	1	3491	3491		92.191	17.936	1	11637000			16784	18208	11761	11783	18653	18653					0.06543269519409023
FLRHLAFMD	9	Unmodified	_FLRHLAFMD_					0	0	0		ENSG00000280314|ENST00000641662|OR8K3;OR8K3|p.F61L|1|0.05|ENSG00000280314|chr11:56318487-56318487|T/C|missense_variant	ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.3456420898438	2	575.297319	1148.58008	0.82719	0.00047588	-3.9397	-0.0022665	-3.1125	-0.0017906	575.2952096212316	97.677	0.45316	97.54	97.285	97.738	-0.1367					15	9	2	0	0	0	0.024477	1	12049	12049		20.947	0	1	59782			16785	11080	11762	11784	18654	18654					0.011737956993783882
FLRIKLKPLD	10	Unmodified	_FLRIKLKPLD_					0	0	0		nc|ENSG00000166780|Q96MC5-2|BMERB1;ENSG00000166780|ENST00000300006|BMERB1	nc|ENSG00000166780|Q96MC5-2|BMERB1	nc|ENSG00000166780|Q96MC5-2|BMERB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.901123046875	2	621.900266	1241.78598	0.31564	0.00019629	1.5538	0.0009663	1.8694	0.0011626	621.900970136541	105.9	0.32963	105.9	105.79	106.12	0					29	14	3	0	0	0	1.1197	1	13595	13595		20.947	0.95016	1	208300			16786	7603	11763	11785	18655	18655					0.1747569215031035
FLRIKLKPLD	10	Unmodified	_FLRIKLKPLD_					0	0	0		nc|ENSG00000166780|Q96MC5-2|BMERB1;ENSG00000166780|ENST00000300006|BMERB1	nc|ENSG00000166780|Q96MC5-2|BMERB1	nc|ENSG00000166780|Q96MC5-2|BMERB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.901123046875	2	621.900266	1241.78598	-2.0128	-0.0012517	3.9959	0.0024851	1.9831	0.0012333	621.9024579436951	106.09	0.34456	105.96	105.77	106.12	-0.13279					29	13	3	0	0	0	1.1068	1	13211	13211		14.137	0.68308	1	410230			16787	7603	11763	11785	18656	18656					0.1747569215031035
FLRINLPVIPN	11	Unmodified	_FLRINLPVIPN_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.5980529785156	3	432.599324	1294.77614	-0.63305	-0.00027386	-3.1741	-0.0013731	-3.8072	-0.001647	432.5978350493493	105.5	0.80409	105.37	104.9	105.71	-0.13099					65	27	4	0	0	0	1.0844	1	13132	13132		19.263	5.7547	1	1683800	+		16788	29042	11764	11786	18657	18657					0.14054504144928615
FLRISFLFIL	10	Unmodified	_FLRISFLFIL_					0	0	0			REV__ENST00000299427.10_2_11:6635118-6635532:-|nuORF	REV__ENST00000299427.10_2_11:6635118-6635532:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	635.386474609375	2	634.891909	1267.76927	-0.8856	-0.00056226	1.7243	0.0010947	0.83866	0.00053246	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.1197	1	13075	13075		20.947	2.6225	1	1402800	+		16789	30034	11765	11787	18658	18658					0.14609191264366927
FLRKIIMV	8	Unmodified	_FLRKIIMV_					0	0	0		nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7895812988281	2	510.325348	1018.63614	-1.0732	-0.00054768	-1.3186	-0.00067293	-2.3918	-0.0012206	510.8268377967382	85.767	0.32972	85.791	85.657	85.987	0.023666					12	7	2	0	0	0	0.027866	1	10684	10684		14.664	0	1	88783			16790	8405	11766	11788	18659	18659					0.12757048606863464
FLRKLLKPDI	10	Unmodified	_FLRKLLKPDI_					0	0	0		nc|ENSG00000172171|Q96QE5-4|TEFM;ENSG00000172171|ENST00000581216|TEFM	nc|ENSG00000172171|Q96QE5-4|TEFM	nc|ENSG00000172171|Q96QE5-4|TEFM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.9017333984375	2	621.900266	1241.78598	0.31982	0.0001989	1.5039	0.00093526	1.8237	0.0011342	622.4027589150551	105.92	0.44003	105.92	105.73	106.17	-0.0013123					35	15	4	0	0	0	1.1329	1	13565	13565		27.882	0	1	756240			16791	8250	11767	11789	18660	18660					0.1747569215033309
FLRKLLKPDI	10	Unmodified	_FLRKLLKPDI_					0	0	0		nc|ENSG00000172171|Q96QE5-4|TEFM;ENSG00000172171|ENST00000581216|TEFM	nc|ENSG00000172171|Q96QE5-4|TEFM	nc|ENSG00000172171|Q96QE5-4|TEFM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.9002685546875	2	621.900266	1241.78598	-0.47748	-0.00029695	1.408	0.00087565	0.93053	0.0005787	621.9008995623008	105.33	0.39741	105.32	105.12	105.52	-0.0015945					28	11	3	0	0	0	1.1197	1	13431	13431		20.947	0	1	1660400			16792	8250	11767	11789	18661	18661					0.1747569215033309
FLRLFVFVCL	10	Unmodified	_FLRLFVFVCL_					0	0	0		ENST00000403263.5_1_2:206863772-206864039:-|nuORF	ENST00000403263.5_1_2:206863772-206864039:-|nuORF	ENST00000403263.5_1_2:206863772-206864039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	419.5777893066406	3	419.578984	1255.71512	-0.0023189	-9.7298E-07	-3.4481	-0.0014468	-3.4504	-0.0014477	419.57756794524124	21.322	1.1609	21.394	21.057	22.218	0.071487					69	23	4	0	0	0	1.1228	1	595	595		22.58	2.5492	1	820250			16793	13697	11768	11790	18662	18662					0.09749275841159033
FLRLIILWLCI	11	Unmodified	_FLRLIILWLCI_					0	0	0		ENSG00000106560|ENST00000223293|GIMAP2	ENSG00000106560|ENST00000223293|GIMAP2	ENSG00000106560|ENST00000223293|GIMAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.2452392578125	3	468.292955	1401.85703	0.842	0.0003943	1.7774	0.00083237	2.6194	0.0012267	468.6269225230307	103.34	0.46998	103.34	103.02	103.49	-0.0046005					12	10	2	0	0	0	0.024804	1	13174	13174		10.587	0	1	48922			16794	2796	11769	11791	18663	18663					0.17218068863508051
FLRLSLPV	8	Unmodified	_FLRLSLPV_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.8001403808594	2	472.80002	943.585488	0.052135	2.465E-05	0.29533	0.00013963	0.34746	0.00016428	472.80000825846173	77.825	1.6119	77.841	77.536	79.148	0.015907					100	38	4	0	0	0	0.89627	1	9563	9563		51.335	5.3835	1	2907400			16795	9837	11770	11792	18664	18664					0.1114384255351979
FLRNFGKVL	9	Unmodified	_FLRNFGKVL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3291015625	2	547.329476	1092.6444	-0.64979	-0.00035565	-3.4216	-0.0018727	-4.0714	-0.0022284	547.3275145364661	57.364	0.92535	57.364	56.678	57.603	0					70	25	4	0	0	0	0.52323	2	6437	6437;6447		57.811	2.3071	1	5111200			16796	3993	11771	11793	18665;18666	18665					0.10178318847852097
FLRPFASK	8	Unmodified	_FLRPFASK_					0	0	0			REV__nc|ENSG00000205111|Q5MAI5|CDKL4	REV__nc|ENSG00000205111|Q5MAI5|CDKL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2374267578125	2	483.281995	964.549437	-0.20939	-0.00010119	-3.1131	-0.0015045	-3.3224	-0.0016057	483.2805148795714	40.405	0.10787	40.18	40.114	40.222	-0.225					4	2	2	0	0	0	0.027866	1	3483	3483		29.15	0	1	102110	+		16797	37086	11772	11794	18667	18667					0.06574385376654845
FLRPLVQF	8	Unmodified	_FLRPLVQF_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.3048400878906	2	510.30547	1018.59639	0.44507	0.00022712	-1.1857	-0.00060506	-0.74061	-0.00037794	510.3047198234141	19.086	1.4232	18.882	18.609	20.032	-0.20371					68	28	3	0	0	0	1.0133	1	402	402		35.201	0	1	631870	+		16798	23577	11773	11795	18668	18668					0.08783244927803935
FLRPSFLEW	9	Unmodified	_FLRPSFLEW_					0	0	0		nc|ENSG00000277363|Q9C0H9-4|SRCIN1	nc|ENSG00000277363|Q9C0H9-4|SRCIN1	nc|ENSG00000277363|Q9C0H9-4|SRCIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.2989501953125	2	597.818941	1193.62333	-0.84355	-0.00050429	-1.6219	-0.00096963	-2.4655	-0.0014739	597.8179400862801	69.909	0.58803	69.641	69.327	69.916	-0.26724					25	13	3	0	0	0	0.024487	1	8098	8098		31.955	11.473	1	120220			16799	18799	11774	11796	18669	18669					0.03426308748316842
FLRPSKLVK	9	Unmodified	_FLRPSKLVK_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.298828125	2	544.352951	1086.69135	-0.27537	-0.0001499	0.088811	4.8345E-05	-0.18656	-0.00010155	544.3528965433812	54.153	0.58405	53.907	53.717	54.301	-0.2453					41	18	3	0	0	0	0.024541	1	5689	5689		29.15	0	1	888880	+		16800	23826	11775	11797	18670	18670					0.15147178398979122
FLRQCKLVE	9	Unmodified	_FLRQCKLVE_					0	0	0		ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	ENSG00000163785|ENST00000623711|RYK	ENSG00000163785|ENST00000623711|RYK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.7946166992188	2	568.318251	1134.62195	-0.070746	-4.0206E-05	2.4978	0.0014195	2.427	0.0013793	568.3201403234898	72.352	0.23878	72.361	72.29	72.529	0.0097733					7	5	2	0	0	0	0.024466	1	8741	8741		47.657	14.142	1	89002			16801	7143	11776	11798	18671	18671					0.06002351387928684
FLRRLVTLITQ	11	Unmodified	_FLRRLVTLITQ_					0	0	0		ENST00000494086.5_1_7:107234525-107258805:+|nuORF	ENST00000494086.5_1_7:107234525-107258805:+|nuORF	ENST00000494086.5_1_7:107234525-107258805:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.7816467285156	3	453.953878	1358.8398	-0.33409	-0.00015166	-0.21925	-9.9529E-05	-0.55334	-0.00025119	453.9537049239361	41.666	0.4278	41.438	41.159	41.587	-0.2278					17	10	2	0	0	0	0.024823	1	3679	3679		7.6794	0	1	64421			16802	15519	11777	11799	18672	18672					0.1747386458202982
FLRRPPLKG	9	Unmodified	_FLRRPPLKG_					0	0	0			REV__ENST00000225512.5_1_17:44895965-44896076:-|nuORF	REV__ENST00000225512.5_1_17:44895965-44896076:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.307861328125	2	542.342918	1082.67128	-0.93107	-0.00050496	-0.67113	-0.00036398	-1.6022	-0.00086894	542.3422193006062	80.268	0.87308	80.268	79.911	80.784	0					23	20	2	0	0	0	0.024436	1	9950	9950		30.504	5.9844	1	134000	+		16803	29372	11778	11800	18673	18673					0.13325427458994454
FLRSLRATP	9	Unmodified	_FLRSLRATP_					0	0	0		ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2780151367188	2	530.816733	1059.61891	-0.3205	-0.00017013	-2.7791	-0.0014752	-3.0996	-0.0016453	531.317596900559	69.465	0.32462	69.214	69.075	69.399	-0.25063					13	7	2	0	0	0	0.024495	1	8092	8092		34.173	21.213	1	59924			16804	8060	11779	11801	18674	18674					0.091488443254093
FLRVLSGKP	9	Unmodified	_FLRVLSGKP_					0	0	0		ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	ENSG00000175414|ENST00000310389|ARL10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7723083496094	2	508.816202	1015.61785	-0.071186	-3.6221E-05	3.8328	0.0019502	3.7616	0.001914	508.8178827171955	51.574	0.58243	51.574	51.359	51.942	0					40	16	3	0	0	0	0.024457	1	5525	5525		37.159	0	1	542390			16805	8557	11780	11802	18675	18675					0.11066629956508223
FLSDAVTGVA	10	Unmodified	_FLSDAVTGVA_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3	nc|ENSG00000158296|Q8WWT9-5|SLC13A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.25823974609375	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	1.0781	1	13146	13146		35.618	0.41757	1	4976900			16806	6660;18416	11781	11803	18676	18676					0.012100613149982564
FLSDGTIISV	10	Unmodified	_FLSDGTIISV_					0	0	0		CIRH1A-SNTB2|1|fusion;CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|1|fusion;CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2876586914062	2	526.28714	1050.55973	1.1225	0.00059074	-1.6751	-0.00088159	-0.55264	-0.00029085	526.2862349548825	82.426	1.8547	82.316	81.765	83.619	-0.11006					90	41	4	0	0	0	0.36026	1	10289	10289		102.77	5.3007	1	6377800			16807	446;447	11782	11804	18677	18677					0.03646903520575506
FLSEATATLA	10	Unmodified	_FLSEATATLA_					0	0	0		nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.27099609375	2	512.27149	1022.52843	-0.70803	-0.0003627	0.58298	0.00029865	-0.12505	-6.4059E-05	512.2712607905927	104.7	1.035	104.57	104.16	105.19	-0.12927					66	32	3	0	0	0	1.0142	1	13055	13055		44.117	6.9577	1	187370			16808	2399	11783	11805	18678	18678					0.018063304864767815
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7923583984375	2	539.792589	1077.57063	-0.67474	-0.00036422	0.057962	3.1287E-05	-0.61678	-0.00033293	539.792609297143	78.182	2.3281	78.182	77.792	80.12	0					214	55	5	0	0	0	0.0085723	13	9716	9645;9656;9668;9680;9692;9704;9716;9728;9741;9753;9767;9778;9789		286.03	102.88	1	49501000			16809	10776	11784	11806	18679;18680;18681;18682;18683;18684;18685;18686;18687;18688;18689;18690;18691	18685					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7906494140625	2	539.792589	1077.57063	-1.0397	-0.00056121	-4.2473	-0.0022927	-5.287	-0.0028539	539.7907235735988	83.324	1.1593	83.324	82.707	83.866	0					37	26	2	0	0	0	0.10174	1	10374	10374		110.12	25.204	1	414920			16810	10776	11784	11806	18692	18692					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7927856445312	2	539.792589	1077.57063	0.015537	8.387E-06	-0.69408	-0.00037466	-0.67854	-0.00036627	539.7922139688235	78.346	2.4886	78.154	77.604	80.092	-0.1921					226	59	5	0	0	0	0.008678	12	9681	9634;9645;9657;9669;9681;9693;9705;9717;9730;9742;9754;9767		304.71	108.08	1	46853000			16811	10776	11784	11806	18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704	18697					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7926025390625	2	539.792589	1077.57063	-0.98653	-0.00053252	0.35898	0.00019377	-0.62755	-0.00033875	539.7927771001557	78.243	2.4419	78.259	77.698	80.14	0.015907					228	58	6	0	0	0	0.0085723	13	9634	9575;9586;9598;9610;9622;9634;9646;9658;9671;9683;9696;9708;9719		268.28	100.27	1	49450000			16812	10776	11784	11806	18705;18706;18707;18708;18709;18710;18711;18712;18713;18714;18715;18716;18717	18710					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7926025390625	2	539.792589	1077.57063	-0.39501	-0.00021322	0.062804	3.3901E-05	-0.3322	-0.00017932	539.7925729904423	78.477	2.1577	78.222	77.826	79.983	-0.25471					164	50	4	0	0	0	0.008678	9	9349	9325;9337;9349;9361;9373;9387;9398;9410;9423		268.28	108.08	1	12339000			16813	10776	11784	11806	18718;18719;18720;18721;18722;18723;18724;18725;18726	18720					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7924194335938	2	539.792589	1077.57063	0.02225	1.2011E-05	-0.37024	-0.00019985	-0.34799	-0.00018784	539.7923641308917	78.369	2.1948	78.138	77.75	79.944	-0.23141					175	51	4	0	0	0	0.008678	10	9357	9333;9345;9357;9369;9381;9394;9407;9418;9432;9445		265.41	96.487	1	14347000			16814	10776	11784	11806	18727;18728;18729;18730;18731;18732;18733;18734;18735;18736	18729					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.7926635742188	2	539.792589	1077.57063	-0.86385	-0.0004663	0.54663	0.00029507	-0.31722	-0.00017123	539.792849425846	78.307	2.3678	78.151	77.617	79.985	-0.15591					171	55	4	0	0	0	0.010583	10	9306	9306;9318;9330;9342;9354;9367;9379;9392;9405;9418		304.71	114.19	1	14390000			16815	10776	11784	11806	18737;18738;18739;18740;18741;18742;18743;18744;18745;18746	18737					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	539.792589	1077.57063	-1.3478	-0.00072753	-7.7957	-0.0042081	-9.1435	-0.0049356	539.7883763201737	83.005	1.4149	83.032	82.617	84.032	0.026558	-0.10083	5.1773E-05	NaN	110.12	45	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179330			16816	10776	11784	11806							0.03494305894855643
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(130)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2654418945312	2	559.26535	1116.51615	-0.39301	-0.0002198	0.44948	0.00025138	0.056463	3.1578E-05	559.2654940302004	79.932	0.50484	79.932	79.616	80.12	0					21	11	2	0	0	0	0.041068	2	9934	9920;9934		132.76	36.943	1	2073000			16817	7047	11785	11807	18747;18748	18748		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(140)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.26513671875	2	559.26535	1116.51615	-0.4718	-0.00026386	0.48545	0.00027149	0.013649	7.6332E-06	559.2652362880974	80.263	1.9283	80.263	79.701	81.63	0					103	46	3	0	0	0	0.034407	2	9976	9976;9987		138.06	38.687	1	2073400			16818	7047	11785	11807	18749;18750	18749		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(130)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.265869140625	2	559.26535	1116.51615	-0.28749	-0.00016078	0.55919	0.00031274	0.27171	0.00015196	559.2653461455658	83.574	3.761	83.574	83.138	86.899	0					216	88	3	0	0	0	0.041068	3	10446	10446;10469;10481		132.76	42.157	1	951100			16819	7047	11785	11807	18751;18752;18753	18751		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(150)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2654418945312	2	559.26535	1116.51615	-1.3266	-0.00074194	1.611	0.00090097	0.28437	0.00015904	559.265892960618	80.09	0.54437	79.938	79.588	80.133	-0.15168					37	12	5	0	0	0	0.016542	3	9917	9906;9917;9930		154.12	50.987	1	1877200			16820	7047	11785	11807	18754;18755;18756	18755		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(160)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2653198242188	2	559.26535	1116.51615	-1.2257	-0.00068548	1.0988	0.00061451	-0.12691	-7.0974E-05	559.2657490601003	80.471	1.4724	80.32	80.091	81.563	-0.15168					88	35	5	0	0	0	0.015752	2	9971	9971;9983		158.07	47.955	1	2089200			16821	7047	11785	11807	18757;18758	18757		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(96)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2655639648438	2	559.26535	1116.51615	-0.70236	-0.00039281	0.9418	0.00052672	0.23944	0.00013391	559.2655541154963	83.645	3.8413	83.555	83.129	86.97	-0.090454					150	90	3	0	0	0	0.16539	1	10429	10429		96.034	16.583	1	951600			16822	7047	11785	11807	18759	18759		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(160)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.265625	2	559.26535	1116.51615	-0.66125	-0.00036981	0.94162	0.00052662	0.28037	0.0001568	559.2654354598089	80.297	1.8879	80.319	79.603	81.491	0.021439					119	45	5	0	0	0	0.015752	2	9905	9866;9905		158.07	46.426	1	2241300			16823	7047	11785	11807	18760;18761	18761		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(100)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2653198242188	2	559.26535	1116.51615	-0.70476	-0.00039415	0.89568	0.00050092	0.19091	0.00010677	559.2656022076416	83.517	1.4924	83.544	83.046	84.538	0.026558					94	34	3	0	0	0	0.12933	3	10388	10352;10376;10388		104.01	16.364	1	870980			16824	7047	11785	11807	18762;18763;18764	18764		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(99)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MSMS	OPSCC_39_ClassI_Rep-3	3	559.263916015625	2	559.26535	1116.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.786	1	79.807	79.307	80.307	0.021439								0	0	0	0.073652	1	9827	9827		98.629	16.324	1				16825	7047	11785	11807	18765	18765		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(140)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MSMS	OPSCC_39_ClassI_Rep-3	3	559.2647094726562	2	559.26535	1116.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.869	1	79.891	79.391	80.391	0.021439								0	0	0	0.014459	1	9839	9839		141.52	36.774	1				16826	7047	11785	11807	18766	18766		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(170)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MSMS	OPSCC_39_ClassI_Rep-3	3	559.2650756835938	2	559.26535	1116.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.952	1	79.973	79.473	80.473	0.021439								0	0	0	0.0070383	1	9851	9851		172.25	67.502	1				16827	7047	11785	11807	18767	18767		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(100)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.265380859375	2	559.26535	1116.51615	0.50648	0.00028326	-0.37264	-0.0002084	0.13384	7.4855E-05	559.2649405171001	83.554	3.4162	83.342	81.206	84.622	-0.21159					185	79	3	0	0	0	0.12602	2	10061	10061;10071		104.75	13.827	1	711010			16828	7047	11785	11807	18768;18769	18768		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(100)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2658081054688	2	559.26535	1116.51615	0.45628	0.00025518	-0.43021	-0.0002406	0.026077	1.4584E-05	559.2649350133187	83.458	3.4099	83.289	81.278	84.688	-0.16915					172	79	3	0	0	0	0.12933	1	10105	10105		104.01	24.301	1	681630			16829	7047	11785	11807	18770	18770		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(110)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.2650756835938	2	559.26535	1116.51615	-0.1125	-6.2917E-05	0.27136	0.00015176	0.15886	8.8845E-05	559.2654351022218	79.889	0.79712	79.738	79.152	79.949	-0.15051					38	18	4	0	0	0	0.10464	1	9566	9566		109.48	10.103	1	731770			16830	7047	11785	11807	18771	18771		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_		FLSFM(1)NTEL		FLSFM(93)NTEL	0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.2658081054688	2	559.26535	1116.51615	-0.11854	-6.6294E-05	0.2889	0.00016157	0.17037	9.5279E-05	559.265302339393	83.473	2.8728	83.334	81.915	84.787	-0.13861					167	66	3	0	0	0	0.17845	1	10042	10042		93.143	8.2277	1	704150			16831	7047	11785	11807	18772	18772		295			-0.03745029248239007
FLSFMNTEL	9	Oxidation (M)	_FLSFM(Oxidation (M))NTEL_					0	0	1		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	559.26535	1116.51615	0.34789	0.00019456	-0.17541	-9.8099E-05	0.17248	9.6462E-05	559.2652022903492	80.016	0.71342	79.77	79.278	79.992	-0.2465	-0.068348	-0.00059202	NaN	154.12	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	813490			16832	7047	11785	11807				295			-0.03745029248239007
FLSFMNTEL	9	Unmodified	_FLSFMNTEL_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.2678833007812	2	551.267893	1100.52123	-1.4254	-0.00078578	1.5722	0.0008667	0.14679	8.0921E-05	551.2685579209269	90.6	1.5004	90.6	90.054	91.554	0					78	35	4	0	0	0	0.011521	3	11448	11448;11460;11472		229.33	110.58	1	2071500			16833	7047	11785	11808	18773;18774;18775	18773					-0.025007253856074385
FLSFMNTEL	9	Unmodified	_FLSFMNTEL_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2679443359375	2	551.267893	1100.52123	-0.53011	-0.00029223	0.60495	0.00033349	0.07484	4.1257E-05	551.2680057402763	90.608	1.4907	90.591	90.038	91.528	-0.016716					79	35	4	0	0	0	0.01388	3	11443	11418;11430;11443		215.39	71.598	1	2153600			16834	7047	11785	11808	18776;18777;18778	18778					-0.025007253856074385
FLSFMNTEL	9	Unmodified	_FLSFMNTEL_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.2682495117188	2	551.267893	1100.52123	-0.042857	-2.3625E-05	0.18304	0.00010091	0.14019	7.7281E-05	551.267817489864	90.612	1.5486	90.623	90.198	91.747	0.011276					81	36	4	0	0	0	0.0088851	3	11387	11375;11387;11402		241.3	103.06	1	2128800			16835	7047	11785	11808	18779;18780;18781	18780					-0.025007253856074385
FLSFMNTEL	9	Unmodified	_FLSFMNTEL_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.2677001953125	2	551.267893	1100.52123	-1.1465	-0.00063203	1.5427	0.00085045	0.39622	0.00021842	551.2685323786812	90.528	1.1996	90.373	90.062	91.261	-0.1552					57	28	4	0	0	0	0.01388	1	11086	11086		180.87	67.458	1	1333600			16836	7047	11785	11808	18782	18782					-0.025007253856074385
FLSFMNTEL	9	Unmodified	_FLSFMNTEL_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.2677612304688	2	551.267893	1100.52123	-0.69404	-0.0003826	0.92651	0.00051076	0.23248	0.00012816	551.2681691167455	90.521	1.2776	90.396	90.049	91.326	-0.12512					64	30	4	0	0	0	0.013924	2	11100	11089;11100		167.23	55.58	1	1341800			16837	7047	11785	11808	18783;18784	18784					-0.025007253856074385
FLSFMNTEL	9	Unmodified	_FLSFMNTEL_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.2677612304688	2	551.267893	1100.52123	0.20047	0.00011051	-0.10557	-5.8196E-05	0.094905	5.2318E-05	551.2676263991121	90.599	0.8275	90.461	90.077	90.904	-0.13824					49	19	4	0	0	0	0.013065	3	11074	11074;11084;11098		171.53	52.518	1	1267900			16838	7047	11785	11808	18785;18786;18787	18785					-0.025007253856074385
FLSFPLLPIF	10	Unmodified	_FLSFPLLPIF_					0	0	0		ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	ENST00000412278.2_3_11:66413513-66413711:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	597.3507080078125	2	597.352086	1192.68962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.6	1	103.6	103.1	104.1	0								0	0	0	0.75114	1	13292	13292		29.15	3.5755	1				16839	13816	11786	11809	18788	18788					0.10098124590376756
FLSFSPGLSL	10	Unmodified	_FLSFSPGLSL_					0	0	0			REV__ENST00000593726.5_1_19:41305451-41305802:+|nuORF	REV__ENST00000593726.5_1_19:41305451-41305802:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2715454101562	2	534.292225	1066.5699	0.47793	0.00025535	-4.4219	-0.0023626	-3.944	-0.0021072	534.2897938720293	59.3	0.60234	59.3	59.035	59.637	0					38	15	3	0	0	0	0.03519	1	6814	6814		68.787	0	1	549550	+		16840	35769	11787	11810	18789	18789					0.039275112458199146
FLSHGRLLPL	10	Unmodified	_FLSHGRLLPL_					0	0	0			REV__ENSG00000164930|ENST00000358755|FZD6	REV__ENSG00000164930|ENST00000358755|FZD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	576.3087768554688	2	576.848033	1151.68151	0.24468	0.00014114	4.0304	0.0023249	4.2751	0.0024661	577.3504080611111	74.709	0.20776	74.45	74.327	74.535	-0.25887					6	4	2	0	0	0	0.03519	1	9109	9109		32.812	0	1	40029	+		16841	25818	11788	11811	18790	18790					0.11173990393604072
FLSILRLS	8	Unmodified	_FLSILRLS_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5;REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.79754638671875	2	474.797478	947.580402	-0.74226	-0.00035242	0.72272	0.00034315	-0.019538	-9.2765E-06	474.7976466059303	33.14	0.72242	32.975	32.679	33.401	-0.16565					41	17	4	0	0	0	0.53523	1	2329	2329		82.305	0	1	900740	+		16842	23350;20469	11789	11812	18791	18791					0.10451538690892903
FLSKPADWN	9	Unmodified	_FLSKPADWN_					0	0	0		ENST00000569860.1_1_2:12856079-12856172:+|nuORF	ENST00000569860.1_1_2:12856079-12856172:+|nuORF	ENST00000569860.1_1_2:12856079-12856172:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2787475585938	2	539.271824	1076.5291	0.42207	0.00022761	-0.020481	-1.1045E-05	0.40159	0.00021656	539.7742649528086	84.575	0.54575	84.416	84.192	84.738	-0.15869					17	12	2	0	0	0	0.024405	1	10266	10266		44.117	14.967	1	75661			16843	17013	11790	11813	18792	18792					-0.006108300738333128
FLSKTLVTL	9	Unmodified	_FLSKTLVTL_					0	0	0		chr19:35505021-35505718|143|18.84|0.85|4.47|-|0|TE_info:MER102a,MER102a_dup2550,hAT-Charlie,DNA,acceptor,-,35504753,35505021|None,DMKN|2	chr19:35505021-35505718|143|18.84|0.85|4.47|-|0|TE_info:MER102a,MER102a_dup2550,hAT-Charlie,DNA,acceptor,-,35504753,35505021|None,DMKN|2	chr19:35505021-35505718|143|18.84|0.85|4.47|-|0|TE_info:MER102a,MER102a_dup2550,hAT-Charlie,DNA,acceptor,-,35504753,35505021|None,DMKN|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26171875	2	511.318243	1020.62193	0.26625	0.00013614	-0.29037	-0.00014847	-0.024127	-1.2337E-05	511.3178345315357	83.925	0.56044	83.787	83.547	84.108	-0.13789					26	12	3	0	0	0	0.024319	1	10137	10137		66.429	5.4573	1	66402			16844	360	11791	11814	18793	18793					0.11244674659576503
FLSLAYPPLL	10	Unmodified	_FLSLAYPPLL_					0	0	0			REV__ENST00000481456.1_1_6:31509722-31509761:-|nuORF	REV__ENST00000481456.1_1_6:31509722-31509761:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.7976684570312	2	567.333893	1132.65323	-1.1519	-0.00065354	-2.8108	-0.0015946	-3.9627	-0.0022482	567.3325555504454	83.367	0.85725	83.367	82.922	83.779	0					28	19	2	0	0	0	0.03519	1	10404	10404		44.117	3.3386	1	133920	+		16845	32130	11792	11815	18794	18794					0.09221247693653822
FLSLINVGL	9	Unmodified	_FLSLINVGL_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.3000793457031	2	488.29731	974.580068	0.34911	0.00017047	-1.2989	-0.00063424	-0.94977	-0.00046377	488.29658539604037	98.173	0.7421	98.171	97.855	98.597	-0.0020752					39	17	3	0	0	0	0.67687	1	12444	12444		47.657	1.7054	1	239880			16846	5072	11793	11816	18795	18795					0.0917611897103825
FLSNLDKAL	9	Unmodified	_FLSNLDKAL_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-4|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.84423828125	2	510.78985	1019.56515	-0.32613	-0.00016659	-3.8112	-0.0019467	-4.1374	-0.0021133	510.78883580459393	76.26	0.43154	75.992	75.779	76.211	-0.26806					16	10	2	0	0	0	0.024397	1	9007	9007		56.721	9.0637	1	45945			16847	7796	11794	11817	18796	18796					0.056146271030456774
FLSNLVEGT	9	Unmodified	_FLSNLVEGT_					0	0	0		ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.K855Pfs*26|1|0.09|ENSG00000142687|chr1:35444254-35444255|-/CTTCTTTTCTCTGG|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L;nc|ENSG00000142687|Q8IZA0-3|KIAA0319L	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.25787353515625	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	0.70186	1	13481	13481		45.952	1.8352	1	6618800			16848	5584	11795	11818	18797	18797					0.012100613150096251
FLSQIVIED	9	Unmodified	_FLSQIVIED_					0	0	0		nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8186645507812	2	532.28714	1062.55973	0.26941	0.0001434	1.0685	0.00056872	1.3379	0.00071213	532.2866959776321	85.764	0.75685	85.764	85.457	86.214	0					50	17	4	0	0	0	0.023181	1	10722	10722		94.006	35.224	1	796520			16849	7660	11796	11819	18798	18798					0.030949035205594555
FLSQIVIED	9	Unmodified	_FLSQIVIED_					0	0	0		nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	532.28714	1062.55973	-0.59083	-0.00031449	1.7538	0.00093352	1.163	0.00061903	532.2869909637603	85.717	0.96869	85.659	85.355	86.324	-0.057617	-0.049784	0.0011079	NaN	94.006	56	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650800			16850	7660	11796	11819							0.030949035205594555
FLSQIVIED	9	Unmodified	_FLSQIVIED_					0	0	0		nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	nc|ENSG00000167210|Q8IVV2|LOXHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.28714	1062.55973	-1.1122	-0.00059201	0.64765	0.00034473	-0.46456	-0.00024728	532.2874158175747	85.68	0.92397	85.704	85.408	86.332	0.023666	-0.0050005	-6.9697E-05	NaN	94.006	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728020			16851	7660	11796	11819							0.030949035205594555
FLSSETPRIN	10	Unmodified	_FLSSETPRIN_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.8214721679688	2	582.306395	1162.59824	-0.41713	-0.0002429	4.1799	0.002434	3.7628	0.0021911	582.308607968386	64.748	0.2995	64.788	64.71	65.01	0.040398					11	7	2	0	0	0	0.03519	1	7544	7544		35.152	3.6222	1	90889			16852	8663	11797	11820	18799	18799					0.023442091550805344
FLSSVIQNL	9	Unmodified	_FLSSVIQNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7898254394531	2	510.78985	1019.56515	-0.53906	-0.00027534	-0.00032494	-1.6597E-07	-0.53938	-0.00027551	510.78986333851043	82.174	2.0716	82.174	81.751	83.823	0					166	48	4	0	0	0	0.01533	9	10238	10226;10238;10250;10262;10274;10286;10298;10310;10350		221.33	49.942	1	20282000			16853	19003;8399	11798	11821	18800;18801;18802;18803;18804;18805;18806;18807;18808	18801					0.056146271030456774
FLSSVIQNL	9	Unmodified	_FLSSVIQNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.78961181640625	2	510.78985	1019.56515	0.92905	0.00047455	-1.4783	-0.00075512	-0.54929	-0.00028057	510.78911698853955	82.261	2.224	82.151	81.482	83.706	-0.11006					136	52	3	0	0	0	0.013887	8	10216	10205;10216;10227;10239;10251;10264;10276;10287		205.58	74.511	1	19375000			16854	19003;8399	11798	11821	18809;18810;18811;18812;18813;18814;18815;18816	18810					0.056146271030456774
FLSSVIQNL	9	Unmodified	_FLSSVIQNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7897644042969	2	510.78985	1019.56515	-0.54716	-0.00027948	-0.0022565	-1.1526E-06	-0.54941	-0.00028063	510.7898539844401	82.101	2.0307	82.127	81.739	83.77	0.025711					159	47	4	0	0	0	0.014988	9	10140	10140;10150;10162;10174;10186;10198;10210;10240;10256		221.33	51.778	1	22283000			16855	19003;8399	11798	11821	18817;18818;18819;18820;18821;18822;18823;18824;18825	18817					0.056146271030456774
FLSSVIQNL	9	Unmodified	_FLSSVIQNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7896728515625	2	510.78985	1019.56515	0.4785	0.00024441	-0.92375	-0.00047184	-0.44525	-0.00022743	510.78935221763095	82.198	1.6393	81.977	81.616	83.256	-0.22016					107	37	4	0	0	0	0.014034	5	9901	9868;9878;9889;9901;9915		215.39	48.712	1	6157300			16856	19003;8399	11798	11821	18826;18827;18828;18829;18830	18829					0.056146271030456774
FLSSVIQNL	9	Unmodified	_FLSSVIQNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7896423339844	2	510.78985	1019.56515	-0.0022934	-1.1714E-06	-0.51482	-0.00026296	-0.51711	-0.00026414	510.7895496279766	82.187	1.6273	82.006	81.689	83.316	-0.18079					116	37	4	0	0	0	0.013887	5	9921	9886;9897;9909;9921;9936		221.33	49.942	1	5499900			16857	19003;8399	11798	11821	18831;18832;18833;18834;18835	18834					0.056146271030456774
FLSSVIQNL	9	Unmodified	_FLSSVIQNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7899169921875	2	510.78985	1019.56515	-0.83413	-0.00042607	0.35494	0.0001813	-0.47919	-0.00024476	510.79000259281304	82.142	1.8529	82.001	81.443	83.296	-0.14014					121	42	4	0	0	0	0.013887	6	9861	9861;9872;9883;9894;9909;9927		205.58	48.253	1	5094800			16858	19003;8399	11798	11821	18836;18837;18838;18839;18840;18841	18836					0.056146271030456774
FLSTINVGL	9	Unmodified	_FLSTINVGL_					0	0	0		ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.27923583984375	2	482.279118	962.543683	-0.083779	-4.0405E-05	0.25924	0.00012503	0.17546	8.4621E-05	482.2791046379828	82.345	1.3142	82.345	81.909	83.223	0					67	30	4	0	0	0	0.03849	2	10287	10275;10287		134.81	6.5829	1	1677500			16859	5402	11799	11822	18842;18843	18843					0.06091242074330694
FLSTINVGL	9	Unmodified	_FLSTINVGL_					0	0	0		ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2789306640625	2	482.279118	962.543683	1.3729	0.0006621	-1.1708	-0.00056464	0.20209	9.7464E-05	482.2784234556435	82.43	1.4023	82.319	81.921	83.323	-0.11006					70	32	4	0	0	0	0.057894	2	10255	10255;10266		125.81	16.522	1	1435300			16860	5402	11799	11822	18844;18845	18844					0.06091242074330694
FLSTINVGL	9	Unmodified	_FLSTINVGL_					0	0	0		ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2790222167969	2	482.279118	962.543683	-0.47865	-0.00023084	0.63003	0.00030385	0.15138	7.3008E-05	482.2792951774891	82.312	1.7218	82.337	81.619	83.341	0.025711					76	40	4	0	0	0	0.03201	3	10199	10187;10199;10213		139.97	33.555	1	2107800			16861	5402	11799	11822	18846;18847;18848	18847					0.06091242074330694
FLSTINVGL	9	Unmodified	_FLSTINVGL_					0	0	0		ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2787170410156	2	482.279118	962.543683	0.071394	3.4432E-05	-0.24999	-0.00012056	-0.17859	-8.6132E-05	482.27897115769366	82.382	1.7603	82.201	81.474	83.234	-0.18079					71	40	3	0	0	0	0.16468	1	9937	9937		96.19	21.935	1	795000			16862	5402	11799	11822	18849	18849					0.06091242074330694
FLSTINVGL	9	Unmodified	_FLSTINVGL_					0	0	0		ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	ENST00000495420.5_1_15:69079601-69113141:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.2789001464844	2	482.279118	962.543683	-0.53052	-0.00025586	0.38458	0.00018548	-0.14593	-7.0381E-05	482.2792352628636	82.37	1.0364	82.23	81.701	82.737	-0.14014					58	23	4	0	0	0	0.17822	1	9904	9904		93.195	40.259	1	793140			16863	5402	11799	11822	18850	18850					0.06091242074330694
FLSTKRSTSA	10	Unmodified	_FLSTKRSTSA_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3027954101562	2	549.301113	1096.58767	-0.55003	-0.00030213	3.7312	0.0020496	3.1812	0.0017474	549.3031405933436	78.762	1.7147	78.762	78.363	80.078	0					126	40	6	0	0	0	1.0236	1	9788	9788		42.864	2.0861	1	13542000	+		16864	27387	11800	11823	18851	18851					0.04324226500671102
FLSTSIAQL	9	Unmodified	_FLSTSIAQL_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2769470214844	2	490.276575	978.538597	-0.063677	-3.1219E-05	-0.32288	-0.0001583	-0.38656	-0.00018952	490.2762825818869	76.366	0.76899	76.366	76.071	76.84	0					42	18	3	0	0	0	0.043667	1	9404	9404		131.03	22.944	1	1492100			16865	3970	11801	11824	18852	18852					0.04846938211687757
FLSTSIAQL	9	Unmodified	_FLSTSIAQL_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.27679443359375	2	490.276575	978.538597	0.031804	1.5593E-05	-0.6404	-0.00031397	-0.60859	-0.00029838	490.27615555611675	76.425	0.76699	76.437	76.09	76.857	0.011635					47	18	3	0	0	0	0.23085	1	9339	9339		84.916	8.0689	1	1583800			16866	3970	11801	11824	18853	18853					0.04846938211687757
FLSTSIAQL	9	Unmodified	_FLSTSIAQL_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.277099609375	2	490.276575	978.538597	0.11362	5.5705E-05	-0.17863	-8.7579E-05	-0.065011	-3.1874E-05	490.2764168992924	76.442	1.007	76.274	75.892	76.899	-0.16854					47	23	3	0	0	0	0.10174	1	9066	9066		110.12	5.3733	1	737300			16867	3970	11801	11824	18854	18854					0.04846938211687757
FLSVLWQVT	9	Unmodified	_FLSVLWQVT_					0	0	0		ENSG00000255837|ENST00000538986|TAS2R20	ENSG00000255837|ENST00000538986|TAS2R20	ENSG00000255837|ENST00000538986|TAS2R20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7297973632812	2	546.808042	1091.60153	-1.0044	-0.00054922	-2.2818	-0.0012477	-3.2862	-0.0017969	546.8063819723824	61.299	0.37441	61.123	60.914	61.289	-0.1761					14	8	2	0	0	0	0.024405	1	6870	6870		35.618	0	1	169110			16868	10898	11802	11825	18855	18855					0.059395039997752974
FLSVYQDLI	9	Unmodified	_FLSVYQDLI_					0	0	0		ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.2991943359375	2	549.297507	1096.58046	-1.3657	-0.0007502	0.80858	0.00044415	-0.55717	-0.00030605	549.2978306314355	91.034	0.7452	90.881	90.646	91.391	-0.15314					43	17	3	0	0	0	0.50848	1	11159	11159		58.782	1.3293	1	588540			16869	10717	11803	11826	18856	18856					0.03603493900232024
FLTALERLN	9	Unmodified	_FLTALERLN_					0	0	0			REV__ENST00000483941.1_1_13:37453875-37494793:-|nuORF	REV__ENST00000483941.1_1_13:37453875-37494793:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2783813476562	2	538.808574	1075.60259	0.15501	8.3523E-05	3.2464	0.0017492	3.4014	0.0018327	538.8101820167918	84.783	0.42286	84.58	84.377	84.8	-0.20329					13	9	2	0	0	0	0.023817	1	10265	10265		71.296	7.0884	1	106180	+		16870	33525	11804	11827	18857	18857					0.06781718368665679
FLTDDFSYN	9	Unmodified	_FLTDDFSYN_					0	0	0		ENST00000508571.6_1_5:109961046-109961184:-|nuORF	ENST00000508571.6_1_5:109961046-109961184:-|nuORF	ENST00000508571.6_1_5:109961046-109961184:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.279541015625	2	561.242929	1120.47131	0.34345	0.00019276	0.4544	0.00025503	0.79785	0.00044779	561.2436208483515	85.031	0.32362	84.894	84.705	85.029	-0.13753					17	7	4	0	0	0	0.024487	1	10260	10260		40.573	7.0796	1	78738			16871	15784	11805	11828	18858	18858					-0.08411136789891316
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	580.3042602539062	2	580.305332	1158.59611	-1.0356	-0.00060095	0.97619	0.00056649	-0.059384	-3.4461E-05	580.3056398206111	100.75	0.88759	100.75	100.35	101.24	0					37	20	3	0	0	0	0.23085	2	12875	12875;12898		84.916	20.708	1	235520			16872	627	11806	11829	18859;18860	18859					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	580.3062133789062	2	580.305332	1158.59611	-0.68172	-0.0003956	0.60754	0.00035256	-0.074178	-4.3046E-05	580.3052531545559	100.69	0.82126	100.7	100.39	101.21	0.0095901					36	19	3	0	0	0	0.29158	2	12850	12850;12874		76.774	29.117	1	233680			16873	627	11806	11829	18861;18862	18861					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	580.3076171875	2	580.305332	1158.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.83	1	100.82	100.32	101.32	-0.0054474								0	0	0	0.047455	1	12824	12824		110.12	45.913	1				16874	627	11806	11829	18863	18863					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	580.307861328125	2	580.305332	1158.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.91	1	100.9	100.4	101.4	-0.0054474								0	0	0	0.096542	1	12835	12835		93.195	36.474	1				16875	627	11806	11829	18864	18864					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.3062744140625	2	580.305332	1158.59611	0.46255	0.00026842	-0.040867	-2.3715E-05	0.42168	0.0002447	580.3051148140067	100.51	0.52637	100.38	100.15	100.68	-0.13364					31	14	3	0	0	0	0.014988	4	12477	12454;12464;12477;12487		161.9	87.643	1	645330			16876	627	11806	11829	18865;18866;18867;18868	18867					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.3055419921875	2	580.305332	1158.59611	-0.10204	-5.9213E-05	0.61679	0.00035793	0.51475	0.00029871	580.3053821531558	100.48	0.9996	100.35	100.15	101.15	-0.12504					48	27	5	0	0	0	0.021872	4	12486	12465;12475;12486;12498		148.04	69.632	1	638440			16877	627	11806	11829	18869;18870;18871;18872	18871					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	580.307373046875	2	580.305332	1158.59611	-0.37843	-0.00021961	0.27919	0.00016202	-0.099245	-5.7592E-05	580.305342436183	100.56	1.2187	100.39	100.21	101.43	-0.17088					54	30	2	0	0	0	0.021872	3	12474	12463;12474;12485		148.04	93.267	1	802800			16878	627	11806	11829	18873;18874;18875	18874					0.023157804172797114
FLTEFINYI	9	Unmodified	_FLTEFINYI_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1;DDRGK1-RAC1|1|fusion	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	580.305332	1158.59611	0.41629	0.00024157	-1.0969	-0.00063651	-0.68057	-0.00039494	580.3042822039732	101.04	0.88332	100.9	100.66	101.54	-0.13156	0.12057	-0.0016841	NaN	84.916	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66040			16879	627	11806	11829							0.023157804172797114
FLTGLGGRGKT	11	Unmodified	_FLTGLGGRGKT_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3032836914062	2	553.819473	1105.62439	-1.0571	-0.00058543	2.3327	0.0012919	1.2756	0.00070647	553.8204942420087	36.127	0.23574	36.127	36.063	36.298	0					10	6	2	0	0	0	0.024783	1	2859	2859		59.931	8.7381	1	65592	+		16880	22183	11807	11830	18876	18876					0.07580523117258053
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MSMS	OPSCC_39_ClassI_Rep-1	1	552.8367919921875	2	552.8368	1103.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.458	1	66.458	65.958	66.958	0								0	0	0	0.084717	1	7908	7908		95.815	18.498	1				16881	9403	11808	11831	18877	18877					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.831298828125	2	552.8368	1103.65905	-0.69784	-0.00038579	0.16102	8.9018E-05	-0.53682	-0.00029677	552.8368236187331	66.724	1.0502	66.442	66.303	67.354	-0.28148					47	30	2	0	0	0	0.091713	1	7925	7925		113.41	28.496	1	1680100			16882	9403	11808	11831	18878	18878					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8355102539062	2	552.8368	1103.65905	-0.42931	-0.00023734	-0.43547	-0.00024074	-0.86478	-0.00047808	552.8363599206399	66.407	1.1947	66.437	66.324	67.519	0.030106					57	31	2	0	0	0	0.053401	1	7831	7831		127.46	20.454	1	2038100			16883	9403	11808	11831	18879	18879					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.836669921875	2	552.8368	1103.65905	-0.26543	-0.00014674	-0.44277	-0.00024478	-0.7082	-0.00039152	552.8364326668978	66.633	0.48981	66.385	66.141	66.63	-0.24839					28	16	2	0	0	0	0.014034	2	7655	7655;7664		166.68	61.932	1	3864300			16884	9403	11808	11831	18880;18881	18880					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8360595703125	2	552.8368	1103.65905	-0.5711	-0.00031573	0.096614	5.3412E-05	-0.47449	-0.00026231	552.836716152933	66.64	0.43835	66.416	66.145	66.584	-0.22374					33	12	4	0	0	0	0.014034	2	7666	7658;7666		166.68	78.924	1	3120500			16885	9403	11808	11831	18882;18883	18883					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.835693359375	2	552.8368	1103.65905	-0.53428	-0.00029537	-0.14176	-7.8372E-05	-0.67604	-0.00037374	552.8365593767693	66.611	0.4567	66.366	66.088	66.545	-0.24517					36	13	4	0	0	0	0.025498	2	7645	7645;7654		145.16	48.965	1	3047100			16886	9403	11808	11831	18884;18885	18884					0.1113634620535322
FLTLFYTV	8	Unmodified	_FLTLFYTV_					0	0	0		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2786560058594	2	502.278586	1002.54262	0.1611	8.0916E-05	-0.32817	-0.00016483	-0.16708	-8.3919E-05	502.27802723323526	79.817	1.166	79.598	78.791	79.957	-0.21923					59	27	4	0	0	0	0.78609	1	9576	9576		60.294	5.3994	1	1047400			16887	10372	11809	11832	18886	18886					0.041450277054195794
FLTLHQIIL	9	Unmodified	_FLTLHQIIL_					0	0	0		ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant	ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant	ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3031005859375	2	549.33951	1096.66447	-0.46161	-0.00025358	1.4246	0.00078259	0.96299	0.00052901	549.3402556169196	78.845	0.20984	78.653	78.506	78.716	-0.1921					5	4	2	0	0	0	0.024477	1	9720	9720		44.117	13.613	1	57108			16888	38188	11810	11833	18887	18887					0.12000069787814027
FLTLTLTEP	9	Unmodified	_FLTLTLTEP_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7927856445312	2	517.792058	1033.56956	0.092169	4.7724E-05	2.8981	0.0015006	2.9903	0.0015483	517.7932950561891	99.966	2.0637	99.795	97.829	99.892	-0.17088					67	51	2	0	0	0	0.70186	1	12390	12390		45.952	1.8352	1	468710			16889	7857	11811	11834	18888	18888					0.054120915259545654
FLTPLRIN	8	Unmodified	_FLTPLRIN_					0	0	0		nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.29327392578125	2	487.295102	972.575651	-0.48664	-0.00023714	-3.6084	-0.0017584	-4.0951	-0.0019955	487.2932372320569	90.024	1.5907	89.899	89.122	90.712	-0.12512					97	37	4	0	0	0	1.0338	1	10998	10998		31.955	0	1	2379400			16890	6445	11812	11835	18889	18889					0.0882665454812468
FLTPPVGLVL	10	Unmodified	_FLTPPVGLVL_					0	0	0		ENST00000300952.6_1_19:1258292-1258616:+|nuORF	ENST00000300952.6_1_19:1258292-1258616:+|nuORF	ENST00000300952.6_1_19:1258292-1258616:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3287353515625	2	528.328611	1054.64267	0.15921	8.4116E-05	-0.35196	-0.00018595	-0.19275	-0.00010184	528.3282826111483	77.79	2.7414	77.579	77.165	79.907	-0.21087					194	65	5	0	0	0	0.36026	1	9618	9618		102.77	15.019	1	9107700			16891	11915	11813	11836	18890	18890					0.11753265039237704
FLTPPVGLVL	10	Unmodified	_FLTPPVGLVL_					0	0	0		ENST00000300952.6_1_19:1258292-1258616:+|nuORF	ENST00000300952.6_1_19:1258292-1258616:+|nuORF	ENST00000300952.6_1_19:1258292-1258616:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3289184570312	2	528.328611	1054.64267	-0.26133	-0.00013807	0.01579	8.3421E-06	-0.24554	-0.00012973	528.3284762998932	77.663	3.4585	77.679	77.19	80.648	0.015907					233	82	5	0	0	0	0.41195	2	9559	9545;9559		97.473	3.4663	1	9212900			16892	11915	11813	11836	18891;18892	18892					0.11753265039237704
FLTPPVGLVL	10	Unmodified	_FLTPPVGLVL_					0	0	0		ENST00000300952.6_1_19:1258292-1258616:+|nuORF	ENST00000300952.6_1_19:1258292-1258616:+|nuORF	ENST00000300952.6_1_19:1258292-1258616:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.3294067382812	2	528.328611	1054.64267	-0.15194	-8.0276E-05	-0.13658	-7.2158E-05	-0.28852	-0.00015243	528.3283563422877	77.652	1.8731	77.49	77.183	79.056	-0.16196					114	43	4	0	0	0	0.36026	1	9249	9249		102.77	28.518	1	2862700			16893	11915	11813	11836	18893	18893					0.11753265039237704
FLTRLFLAV	9	Unmodified	_FLTRLFLAV_					0	0	0			REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|0|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|11	REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|0|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.3320922851562	2	540.334227	1078.6539	-0.62827	-0.00033948	-3.4504	-0.0018644	-4.0787	-0.0022039	540.332254778646	67.655	0.79381	67.367	66.992	67.785	-0.28834					49	19	3	0	0	0	0.56934	1	8060	8060		54.776	0.01164	1	1982800	+		16894	19326	11814	11837	18894	18894					0.1177208713336313
FLTVMEIVV	9	Oxidation (M)	_FLTVM(Oxidation (M))EIVV_		FLTVM(1)EIVV		FLTVM(77)EIVV	0	0	1		nc|ENSG00000124224|Q9P1A2|PPP4R1L;ENST00000244070.7_1_20:56821016-56884481:-|nuORF;ENST00000493688.5_1_20:56826891-56884481:-|nuORF	nc|ENSG00000124224|Q9P1A2|PPP4R1L	nc|ENSG00000124224|Q9P1A2|PPP4R1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7962036132812	2	533.796286	1065.57802	-0.053453	-2.8533E-05	-4.1259	-0.0022024	-4.1793	-0.0022309	533.7937985370679	91.344	1.4335	91.356	91.114	92.548	0.011276					87	34	4	0	0	0	0.29104	1	11515	11515		76.847	8.0598	1	4218500			16895	11300	11815	11838	18895	18895		465			0.047853221709146965
FLTVRLPLY	9	Unmodified	_FLTVRLPLY_					0	0	0			REV__ENSG00000181785|ENST00000641320|OR5AS1	REV__ENSG00000181785|ENST00000641320|OR5AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.279541015625	2	561.33951	1120.66447	0.34038	0.00019107	-0.19054	-0.00010696	0.14984	8.411E-05	561.3403131265346	84.985	0.53611	84.847	84.577	85.113	-0.13753					16	12	2	0	0	0	0.024487	1	10260	10260		40.573	11.423	1	162150	+		16896	27424	11816	11839	18896	18896					0.108960697878274
FLVAQFID	8	Unmodified	_FLVAQFID_					0	0	0			REV__ENSG00000105928|ENST00000645220|GSDME	REV__ENSG00000105928|ENST00000645220|GSDME	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.76287841796875	2	476.760561	951.506569	1.9818	0.00094486	1.8433	0.00087879	3.8251	0.0018237	476.76126309106206	63.976	2.1623	63.976	63.558	65.721	0					187	59	5	0	0	0	0.88442	1	7587	7587		52.299	0.96372	1	17568000	+		16897	21575	11817	11840	18897	18897					0.028875705285713593
FLVDLALYI	9	Unmodified	_FLVDLALYI_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8134155273438	2	533.812793	1065.61103	-0.57757	-0.00030832	0.6837	0.00036497	0.10612	5.6649E-05	533.812877015647	104.01	0.89204	104.01	103.67	104.57	0					55	21	4	0	0	0	0.088511	1	13347	13347		114.59	13.374	1	504300	+		16898	24724	11818	11841	18898	18898					0.08085272285256906
FLVDLALYI	9	Unmodified	_FLVDLALYI_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.814208984375	2	533.812793	1065.61103	0.028485	1.5206E-05	0.25001	0.00013346	0.27849	0.00014866	533.8125928762054	103.88	1.229	103.76	103.28	104.51	-0.12574					68	28	4	0	0	0	0.29104	1	12929	12929		76.847	11.043	1	574130	+		16899	24724	11818	11841	18899	18899					0.08085272285256906
FLVDLDGQPL	10	Unmodified	_FLVDLDGQPL_					0	0	0			REV__ENSG00000183111|ENST00000333677|ARHGEF37	REV__ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.801025390625	2	558.800414	1115.58628	0.57074	0.00031893	-0.53208	-0.00029733	0.038659	2.1603E-05	558.7995780876657	86.814	1.1044	86.672	86.321	87.425	-0.14218					67	25	4	0	0	0	0.55353	1	10561	10561		82.241	2.7895	1	1030000	+		16900	27539	11819	11842	18900	18900					0.033105924118899566
FLVEHNLVL	9	Unmodified	_FLVEHNLVL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3138427734375	2	542.313492	1082.61243	-0.71133	-0.00038577	0.020826	1.1294E-05	-0.69051	-0.00037447	542.3135542826462	69.121	1.4725	69.121	68.482	69.954	0					98	37	4	0	0	0	0.17822	2	8315	8315;8327		93.195	23.966	1	3495300			16901	3464	11820	11843	18901;18902	18901					0.07442906374035374
FLVEHNLVL	9	Unmodified	_FLVEHNLVL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3134155273438	2	542.313492	1082.61243	-0.11366	-6.164E-05	-0.35188	-0.00019083	-0.46554	-0.00025247	542.3132175612163	69.464	0.9902	69.171	68.97	69.96	-0.29291					48	24	2	0	0	0	0.16468	3	8336	8324;8336;8349		96.19	30.387	1	3702600			16902	3464	11820	11843	18903;18904;18905	18904					0.07442906374035374
FLVEHNLVL	9	Unmodified	_FLVEHNLVL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.3137817382812	2	542.313492	1082.61243	-1.1023	-0.00059778	0.41147	0.00022315	-0.69081	-0.00037464	542.3136218872996	69.224	1.021	69.239	68.974	69.995	0.015129					48	25	2	0	0	0	0.17822	3	8251	8239;8251;8264		93.195	32.224	1	3907000			16903	3464	11820	11843	18906;18907;18908	18907					0.07442906374035374
FLVEHNLVL	9	Unmodified	_FLVEHNLVL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.313492	1082.61243	-0.99589	-0.00054008	0.22017	0.0001194	-0.77572	-0.00042068	542.3133171526564	69.494	1.1711	69.226	68.66	69.831	-0.26725	0.068005	0.00018646	NaN	96.19	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659520			16904	3464	11820	11843							0.07442906374035374
FLVEHNLVL	9	Unmodified	_FLVEHNLVL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.313492	1082.61243	-0.064752	-3.5116E-05	-0.25085	-0.00013604	-0.3156	-0.00017115	542.3131030315317	69.35	0.78344	69.1	68.866	69.649	-0.25063	-0.058894	-0.00032442	NaN	96.19	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	629030			16905	3464	11820	11843							0.07442906374035374
FLVEHNLVL	9	Unmodified	_FLVEHNLVL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.313492	1082.61243	-0.97663	-0.00052964	0.63821	0.00034611	-0.33842	-0.00018353	542.3136802743958	69.316	0.91193	69.093	68.768	69.68	-0.22245	-0.065072	0.00063987	NaN	96.19	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	655870			16906	3464	11820	11843							0.07442906374035374
FLVFFFLF	8	Unmodified	_FLVFFFLF_					0	0	0			REV__ENSG00000187764|ENST00000422704|SEMA4D	REV__ENSG00000187764|ENST00000422704|SEMA4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7635498046875	2	540.301865	1078.58918	-0.85362	-0.00046121	-0.86678	-0.00046832	-1.7204	-0.00092953	540.3013488860985	33.769	0.66552	33.765	33.486	34.152	-0.0045624					25	16	2	0	0	0	0.027866	1	2493	2493		43.626	14.476	1	376200	+		16907	27970	11821	11844	18909	18909					0.05302512327352815
FLVFLILIC	9	Unmodified	_FLVFLILIC_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.83154296875	2	540.829932	1079.64531	-1.5879	-0.00085881	4.1646	0.0022523	2.5766	0.0013935	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	0.93795	1	9331	9331		29.842	0	1	90806000			16908	624	11822	11845	18910	18910					0.10867397172546589
FLVGGDKPL	9	Unmodified	_FLVGGDKPL_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;nc|ENSG00000159788|O14924-7|RGS12;nc|ENSG00000159788|O14924-6|RGS12;ENST00000508158.5_1_4:3386893-3430067:+|nuORF;nc|ENSG00000159788|O14924-2|RGS12;nc|ENSG00000159788|O14924-3|RGS12;ENST00000515521.5_1_4:3422373-3428454:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2715759277344	2	473.273835	944.533118	0.18796	8.8957E-05	-4.2004	-0.0019879	-4.0125	-0.001899	473.27170194724437	34.998	1.0286	34.782	34.467	35.496	-0.21555					54	25	4	0	0	0	0.13494	1	2610	2610		102.77	3.3984	1	2344000			16909	6769	11823	11846	18911	18911					0.05863259419891165
FLVGTYVVGN	10	Unmodified	_FLVGTYVVGN_					0	0	0			REV__ENSG00000205143|ENST00000378909|ARID3C	REV__ENSG00000205143|ENST00000378909|ARID3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2740478515625	2	534.78985	1067.56515	-0.14509	-7.7593E-05	-1.0468	-0.0005598	-1.1919	-0.00063739	534.7892305811795	88.131	0.42104	88.131	87.962	88.383	0					23	9	3	0	0	0	0.03519	1	11133	11133		32.812	8.6097	1	262960	+		16910	28663	11824	11847	18912	18912					0.034066271030496864
FLVHLVVM	8	Unmodified	_FLVHLVVM_					0	0	0		ENSG00000136247|ENST00000335965|ZDHHC4;ENST00000474738.1_1_7:6624591-6628538:+|nuORF	ENSG00000136247|ENST00000335965|ZDHHC4	ENSG00000136247|ENST00000335965|ZDHHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.8125915527344	2	479.283149	956.551745	0.63527	0.00030447	3.5684	0.0017103	4.2037	0.0020148	479.2846228305533	57.41	0.61162	57.235	57.034	57.646	-0.1749					19	15	2	0	0	0	0.027866	1	6449	6449		24.504	11.545	1	253890			16911	5000	11825	11848	18913	18913					0.0717309779010975
FLVHMSVF	8	Unmodified	_FLVHMSVF_					0	0	0			REV__ENST00000392952.7_1_10:116194658-116195159:-|nuORF	REV__ENST00000392952.7_1_10:116194658-116195159:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.26104736328125	2	490.257131	978.499709	0.30171	0.00014791	1.5283	0.00074924	1.83	0.00089716	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.0472	1	13412	13412		29.842	1.5873	1	6618800	+		16912	31626	11826	11849	18914	18914					0.00959934376351157
FLVIKNLVP	9	Unmodified	_FLVIKNLVP_					0	0	0		ENST00000463730.1_1_10:13337446-13342087:-|nuORF;ENSG00000107537|ENST00000263038|PHYH	ENST00000463730.1_1_10:13337446-13342087:-|nuORF	ENST00000463730.1_1_10:13337446-13342087:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7661743164062	2	521.836603	1041.65865	0.10634	5.5493E-05	-0.85826	-0.00044787	-0.75192	-0.00039238	521.8361204528703	79.069	0.46179	78.814	78.6	79.062	-0.25471					17	10	2	0	0	0	0.024466	1	9415	9415		33.516	0	1	86635			16913	2840	11827	11850	18915	18915					0.13948971276136035
FLVINILVN	9	Unmodified	_FLVINILVN_					0	0	0			REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.834228515625	2	522.826235	1043.63792	-0.7022	-0.00036713	1.3395	0.00070031	0.63728	0.00033318	522.8263590461326	69.333	0.85773	69.333	69.016	69.874	0					39	21	3	0	0	0	0.02435	1	8357	8357		60.972	29.017	1	846200	+		16914	31872	11828	11851	18916	18916					0.11784380896460789
FLVINILVN	9	Unmodified	_FLVINILVN_					0	0	0			REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.826235	1043.63792	-0.81606	-0.00042666	1.2954	0.00067729	0.47939	0.00025064	522.8266744739434	69.64	0.62529	69.373	69.037	69.662	-0.26725	0.020211	0.00035274	NaN	60.972	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237000	+		16915	31872	11828	11851							0.11784380896460789
FLVINILVN	9	Unmodified	_FLVINILVN_					0	0	0			REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.826235	1043.63792	-0.072298	-3.78E-05	1.1295	0.00059051	1.0572	0.00055271	522.8264030914023	69.484	0.45373	69.262	69.02	69.474	-0.22245	-0.090878	0.00017918	NaN	60.972	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276410	+		16916	31872	11828	11851							0.11784380896460789
FLVISVITSY	10	Unmodified	_FLVISVITSY_					0	0	0		nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;ENSG00000139155|ENST00000266509|SLCO1C1;nc|ENSG00000139155|Q9NYB5-4|SLCO1C1;nc|ENSG00000139155|Q9NYB5-3|SLCO1C1	nc|ENSG00000139155|Q9NYB5-2|SLCO1C1	nc|ENSG00000139155|Q9NYB5-2|SLCO1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.731689453125	2	571.328808	1140.64306	-0.44052	-0.00025168	0.98645	0.00056359	0.54593	0.0003119	571.3291225212713	72.539	0.46182	72.341	72.206	72.667	-0.19811					13	10	2	0	0	0	0.03519	1	8507	8507		42.396	27.531	1	72646			16917	5304	11829	11852	18917	18917					0.07836639968422787
FLVKTHSSH	9	Unmodified	_FLVKTHSSH_					0	0	0		ENSG00000185669|ENST00000332281|SNAI3	ENSG00000185669|ENST00000332281|SNAI3	ENSG00000185669|ENST00000332281|SNAI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2843627929688	2	528.285266	1054.55598	0.040374	2.1329E-05	-1.4408	-0.00076113	-1.4004	-0.0007398	528.2843800053182	87.191	1.5307	87.053	86.136	87.667	-0.13734					93	35	5	0	0	0	0.59099	1	10610	10610		53.351	3.9099	1	2169600			16918	9463	11830	11853	18918	18918					0.0308827853737057
FLVLDVVYL	9	Unmodified	_FLVLDVVYL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.82080078125	2	540.820618	1079.62668	-0.28344	-0.00015329	0.097182	5.2558E-05	-0.18626	-0.00010073	540.820626521652	105.76	0.87628	105.64	105.44	106.32	-0.12444					59	31	3	0	0	0	0.55828	2	13168	13164;13168		55.504	21.989	1	286110			16919	2184	11831	11854	18919;18920	18920					0.09005558802323321
FLVLDVVYL	9	Unmodified	_FLVLDVVYL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.820618	1079.62668	-0.49466	-0.00026752	-0.16478	-8.9114E-05	-0.65944	-0.00035664	540.8205568690169	105.87	0.49261	105.87	105.65	106.14	-0.0013123	0.070596	-0.00027385	NaN	55.504	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203100			16920	2184	11831	11854							0.09005558802323321
FLVLDVVYL	9	Unmodified	_FLVLDVVYL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.820618	1079.62668	-0.61467	-0.00033242	-0.33209	-0.0001796	-0.94676	-0.00051202	540.8205662811168	105.98	0.52052	105.98	105.66	106.18	0.00015259	0.1823	-0.00045482	NaN	55.504	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221780			16921	2184	11831	11854							0.09005558802323321
FLVLDVVYL	9	Unmodified	_FLVLDVVYL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.820618	1079.62668	-1.1973	-0.00064753	0.69054	0.00037346	-0.50677	-0.00027407	540.820903321465	105.83	0.57649	105.7	105.47	106.04	-0.13279	-0.10222	0.0006513	NaN	55.504	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238220			16922	2184	11831	11854							0.09005558802323321
FLVLDVVYL	9	Unmodified	_FLVLDVVYL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.820618	1079.62668	-0.35768	-0.00019344	-0.012914	-6.9843E-06	-0.37059	-0.00020042	540.820458404536	105.86	0.78565	105.7	105.49	106.27	-0.16133	-0.10375	-0.00010959	NaN	55.504	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255100			16923	2184	11831	11854							0.09005558802323321
FLVLENIYP	9	Unmodified	_FLVLENIYP_					0	0	0			REV__ENSG00000232382|ENST00000642057|OR5K1	REV__ENSG00000232382|ENST00000642057|OR5K1	MSMS	OPSCC_39_ClassI_Rep-3	3	554.3121337890625	2	554.307875	1106.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.67	1	100.66	100.16	101.16	-0.0054474								0	0	0	0.071952	1	12803	12803		99.375	6.1795	1		+		16924	28903	11832	11855	18921	18921					0.052160842798684826
FLVLGYTVL	9	Unmodified	_FLVLGYTVL_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.80615234375	2	512.807511	1023.60047	0.52576	0.00026961	-4.4366	-0.0022751	-3.9108	-0.0020055	512.8050805334625	70.685	1.3208	70.685	70.397	71.718	0					56	32	4	0	0	0	0.36105	1	8547	8547		68.485	10.673	1	1176000			16925	5526	11833	11856	18922	18922					0.0896128963083811
FLVLVGDMDN	10	Unmodified	_FLVLVGDMDN_					0	0	0		ENST00000448659.1_1_2:132481246-132481432:-|nuORF	ENST00000448659.1_1_2:132481246-132481432:-|nuORF	ENST00000448659.1_1_2:132481246-132481432:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.778076171875	2	561.778625	1121.5427	-1.1108	-0.00062401	1.0687	0.00060038	-0.042048	-2.3622E-05	561.7792002432449	83.816	0.77736	83.726	83.469	84.246	-0.090454					40	17	3	0	0	0	0.94316	1	10453	10453		51.193	1.7511	1	755420			16926	14483	11834	11857	18923	18923					-0.013213403568897775
FLVLVGDMDN	10	Unmodified	_FLVLVGDMDN_					0	0	0		ENST00000448659.1_1_2:132481246-132481432:-|nuORF	ENST00000448659.1_1_2:132481246-132481432:-|nuORF	ENST00000448659.1_1_2:132481246-132481432:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.7780151367188	2	561.778625	1121.5427	-0.97345	-0.00054686	0.98056	0.00055086	0.0071131	3.996E-06	561.779096674404	83.751	1.0318	83.778	83.384	84.416	0.026558					46	23	3	0	0	0	0.86389	1	10399	10399		56.434	6.9922	1	770320			16927	14483	11834	11857	18924	18924					-0.013213403568897775
FLVPFWTF	8	Unmodified	_FLVPFWTF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;RPS6KB1-VMP1|6|fusion;RPS6KB1-VMP1|9|fusion;RPS6KB1-VMP1|7|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1;RPS6KB1-VMP1|2|fusion;RPS6KB1-VMP1|11|fusion;CLTC-VMP1|13|fusion;CLTC-VMP1|10|fusion;RPS6KB1-VMP1|3|fusion;RPS6KB1-VMP1|12|fusion;RPS6KB1-VMP1|4|fusion;ENSG00000062716|ENST00000262291|VMP1;VMP1-RPS6KB1|1|fusion;RPS6KB1-VMP1|10|fusion	CLTC-VMP1|9|fusion;VMP1-RPS6KB1|1|fusion	CLTC-VMP1|9|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.3154907226562	2	528.781296	1055.54804	-0.40574	-0.00021455	-0.25466	-0.00013466	-0.6604	-0.00034921	528.7809385341549	66.606	0.36517	66.36	66.088	66.453	-0.24517					13	9	2	0	0	0	0.027866	1	7647	7647		29.842	0	1	491220			16928	456;38144	11835	11858	18925	18925					0.022487512878797133
FLVPYIIML	9	Unmodified	_FLVPYIIML_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.7534790039062	2	554.827389	1107.64023	-0.18272	-0.00010138	2.566	0.0014237	2.3833	0.0013223	554.8286632937373	106.43	0.2857	106.43	106.23	106.51	-0.0013123					10	7	2	0	0	0	0.024475	1	13618	13618		29.842	0	1	98710			16929	7151	11836	11859	18926	18926					0.0907109330989897
FLVQNIHTL	9	Unmodified	_FLVQNIHTL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.81103515625	2	542.811116	1083.60768	-1.227	-0.00066605	-0.043645	-2.3691E-05	-1.2707	-0.00068974	542.811186340134	62.932	0.79543	62.932	62.651	63.447	0					25	20	2	0	0	0	0.017512	1	7332	7332		205.58	102.81	1	3856800			16930	3296	11837	11860	18927	18927					0.06922022231265146
FLVQNIHTL	9	Unmodified	_FLVQNIHTL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.81103515625	2	542.811116	1083.60768	-0.10553	-5.7284E-05	-1.8356	-0.00099641	-1.9412	-0.0010537	542.8106408768484	62.937	1.159	62.991	62.679	63.838	0.054104					41	30	3	0	0	0	0.013887	2	7255	7244;7255		221.33	104.42	1	3659900			16931	3296	11837	11860	18928;18929	18929					0.06922022231265146
FLVQNIHTL	9	Unmodified	_FLVQNIHTL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8114624023438	2	542.811116	1083.60768	-0.30062	-0.00016318	-0.61733	-0.00033509	-0.91795	-0.00049827	542.8106130075349	63.104	0.76253	62.883	62.648	63.411	-0.22097					23	18	2	0	0	0	0.12602	1	7120	7120		104.75	32.869	1	753800			16932	3296	11837	11860	18930	18930					0.06922022231265146
FLVQNIHTL	9	Unmodified	_FLVQNIHTL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.811116	1083.60768	-0.54615	-0.00029646	-0.51625	-0.00028023	-1.0624	-0.00057668	542.8107957980027	63.161	0.64638	62.978	62.704	63.351	-0.18386	0.019344	-0.0001263	NaN	221.33	23	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	643050			16933	3296	11837	11860							0.06922022231265146
FLVQNIHTL	9	Unmodified	_FLVQNIHTL_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.811116	1083.60768	-0.57537	-0.00031232	-0.2314	-0.00012561	-0.80677	-0.00043792	542.8108430076736	63.266	0.56965	63.007	62.706	63.276	-0.25824	0.049147	0.00018294	NaN	221.33	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	672960			16934	3296	11837	11860							0.06922022231265146
FLVRESTT	8	Unmodified	_FLVRESTT_					0	0	0		nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-5|SHC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.75775146484375	2	476.758549	951.502546	0.38446	0.00018329	-1.6457	-0.00078461	-1.2613	-0.00060132	476.75766316682655	103.71	1.8057	103.54	102.91	104.72	-0.16791					135	46	4	0	0	0	1.0574	1	12954	12954		26.796	0.10319	1	2252400			16935	6830	11838	11861	18931	18931					0.024854810348415413
FLVSPTLLGI	10	Unmodified	_FLVSPTLLGI_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7791748046875	2	530.326068	1058.63758	0.26307	0.00013951	-3.4526	-0.001831	-3.1895	-0.0016915	530.3243210126672	86.037	0.56403	85.893	85.581	86.145	-0.1441					19	12	2	0	0	0	0.03519	1	10461	10461		35.618	7.736	1	81914			16936	2482	11839	11862	18932	18932					0.11060961176622186
FLVSSPLYLLL	11	Unmodified	_FLVSSPLYLLL_					0	0	0		ENST00000482167.1_1_2:198358096-198358177:-|nuORF	ENST00000482167.1_1_2:198358096-198358177:-|nuORF	ENST00000482167.1_1_2:198358096-198358177:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.51324462890625	3	422.256564	1263.74786	-0.45347	-0.00019148	0.38692	0.00016338	-0.066548	-2.8101E-05	422.25654982295816	31.984	0.39924	31.984	31.749	32.149	0					12	9	2	0	0	0	0.024753	1	2159	2159		31.634	6.5083	1	37388			16937	15248	11840	11863	18933	18933					0.12653761444994416
FLVSTQRKEF	10	Unmodified	_FLVSTQRKEF_					0	0	0		NUCB1|p.A319V|1|0.21|ENSG00000104805|chr19:48919240-48919240|C/T|missense_variant	NUCB1|p.A319V|1|0.21|ENSG00000104805|chr19:48919240-48919240|C/T|missense_variant	NUCB1|p.A319V|1|0.21|ENSG00000104805|chr19:48919240-48919240|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	418.9009094238281	3	418.89955	1253.67682	0.45411	0.00019023	2.4361	0.0010205	2.8902	0.0012107	418.90049202530565	18.841	0.44408	18.637	18.46	18.904	-0.20371					25	8	4	0	0	0	1.1277	1	349	349		25.126	0	1	127170			16938	18893	11841	11864	18934	18934					0.06013061460157587
FLVTDLAKL	9	Unmodified	_FLVTDLAKL_					0	0	0			REV__nc|ENSG00000167323|Q13586|STIM1	REV__nc|ENSG00000167323|Q13586|STIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.84466552734375	2	510.310418	1018.60628	-0.43482	-0.0002219	0.39102	0.00019954	-0.043805	-2.2354E-05	510.3103395202131	76.04	0.90026	75.767	75.306	76.206	-0.27266					50	22	3	0	0	0	0.023239	1	8995	8995		96.19	11.275	1	527340	+		16939	26131	11842	11865	18935	18935					0.09772388142516775
FLVVGWHIQI	10	Unmodified	_FLVVGWHIQI_					0	0	0		nc|ENSG00000170417|Q6ZP80-3|TMEM182;nc|ENSG00000170417|Q6ZP80-2|TMEM182;ENST00000484094.1_1_2:103414278-103431424:+|nuORF;ENST00000488134.5_1_2:103353421-103431424:+|nuORF;ENSG00000170417|ENST00000412401|TMEM182	nc|ENSG00000170417|Q6ZP80-3|TMEM182	nc|ENSG00000170417|Q6ZP80-3|TMEM182	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.5707702636719	3	404.569365	1210.68626	0.91559	0.00037042	1.9207	0.00077708	2.8363	0.0011475	404.57005283006345	29.846	1.2331	29.924	29.646	30.879	0.078344					91	29	5	0	0	0	1.118	1	1838	1838		30.318	2.6738	1	1825700			16940	8037	11843	11866	18936	18936					0.08934874536384996
FLVVIEKDSNN	11	Unmodified	_FLVVIEKDSNN_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;DMXL2|p.F1728Sfs*3|1|0.06|ENSG00000104093|chr15:51487988-51487988|A/-|frameshift_variant	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	639.3411865234375	2	639.340435	1276.66632	0.23569	0.00015069	3.7132	0.002374	3.9489	0.0025247	639.3427684848161	103.48	0.49986	103.47	103.27	103.77	-0.0043869					26	11	3	0	0	0	1.0238	1	13219	13219		31.53	2.3598	1	125520			16941	2544	11844	11867	18937	18937					0.039050340151106866
FLVVLIFIV	9	Unmodified	_FLVVLIFIV_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2939453125	2	531.851722	1061.68889	-0.34848	-0.00018534	-3.6421	-0.0019371	-3.9906	-0.0021224	531.8494424693587	65.969	0.28426	65.727	65.583	65.867	-0.24145					9	6	2	0	0	0	0.024541	1	7538	7538		21.702	0	1	64097	+		16942	25874	11845	11868	18938	18938					0.160513299412969
FLVVSAEHAV	10	Unmodified	_FLVVSAEHAV_					0	0	0		ENST00000260128.8_1_8:70570870-70571554:+|nuORF	ENST00000260128.8_1_8:70570870-70571554:+|nuORF	ENST00000260128.8_1_8:70570870-70571554:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7393188476562	2	536.295299	1070.57605	-0.44998	-0.00024132	1.7981	0.00096432	1.3481	0.000723	536.296127921717	70.307	0.28566	70.037	69.871	70.157	-0.26945					9	6	2	0	0	0	0.03519	1	8190	8190		55.504	3.205	1	126480			16943	11442	11846	11869	18939	18939					0.043580294773164496
FLVVTAAS	8	Unmodified	_FLVVTAAS_					0	0	0		ENST00000559198.1_1_15:49303877-49305024:-|nuORF	ENST00000559198.1_1_15:49303877-49305024:-|nuORF	ENST00000559198.1_1_15:49303877-49305024:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2330322265625	2	404.234179	806.453805	0.2566	0.00010373	-4.2648	-0.001724	-4.0082	-0.0016203	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0133	2	10206	10194;10206		35.201	8.4046	1	12775000			16944	16772	11847	11870	18940;18941	18941					0.04283612465758324
FLVVVMCVGT	10	Unmodified	_FLVVVMCVGT_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-9|NOX4	REV__nc|ENSG00000086991|Q9NPH5-9|NOX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.285400390625	2	534.285031	1066.55551	-0.37302	-0.0001993	-0.83102	-0.000444	-1.204	-0.0006433	534.2845398871997	105.79	0.63905	105.79	105.54	106.18	0.00015259					52	22	3	0	0	0	1.0939	1	13532	13532		33.516	3.674	1	294350	+		16945	20780	11848	11871	18942	18942					0.02489399501655498
FLVYFAMV	8	Unmodified	_FLVYFAMV_					0	0	0			REV__ENSG00000215717|ENST00000338272|TMEM167B	REV__ENSG00000215717|ENST00000338272|TMEM167B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3157958984375	2	495.261882	988.509211	-0.23925	-0.00011849	-4.2286	-0.0020943	-4.4679	-0.0022128	495.259963877498	73.709	0.56053	73.438	73.05	73.611	-0.27126					33	14	3	0	0	0	0.027866	1	8986	8986		24.504	0	1	571750	+		16946	28811	11849	11872	18943	18943					0.01449702661864194
FLVYFIPLTI	10	Unmodified	_FLVYFIPLTI_					0	0	0		nc|ENSG00000187258|Q6W5P4-2|NPSR1;nc|ENSG00000187258|Q6W5P4-5|NPSR1;ENSG00000187258|ENST00000360581|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1;nc|ENSG00000187258|Q6W5P4-3|NPSR1	nc|ENSG00000187258|Q6W5P4-2|NPSR1	nc|ENSG00000187258|Q6W5P4-2|NPSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.24700927734375	3	409.245888	1224.71583	0.42019	0.00017196	1.869	0.00076489	2.2892	0.00093685	409.2466928399336	37.663	1.5127	37.696	37.303	38.815	0.032269					135	41	5	0	0	0	0.50517	1	3041	3041		87.696	9.4327	1	9816200			16947	9619	11850	11873	18944	18944					0.11246393761848594
FLWDDSMAL	9	Oxidation (M)	_FLWDDSM(Oxidation (M))AL_		FLWDDSM(1)AL		FLWDDSM(94)AL	0	0	1		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.249267578125	2	557.2497	1112.48485	-0.085233	-4.7496E-05	0.63087	0.00035155	0.54564	0.00030406	557.2499977367331	88.263	1.4858	88.126	87.746	89.232	-0.13744					56	35	4	0	0	0	0.17455	1	10750	10750		94.006	17.16	1	529230			16948	18245	11851	11874	18945	18945		565			-0.0668960228231299
FLWDDSMAL	9	Oxidation (M)	_FLWDDSM(Oxidation (M))AL_					0	0	1		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.2497	1112.48485	0.41984	0.00023396	-0.30897	-0.00017217	0.11087	6.1781E-05	557.2493533314478	88.15	0.83479	88.15	87.805	88.64	0	0.029977	-0.00080875	NaN	94.006	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199880			16949	18245	11851	11874				565			-0.0668960228231299
FLWDDSMAL	9	Oxidation (M)	_FLWDDSM(Oxidation (M))AL_					0	0	1		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.2497	1112.48485	0.28474	0.00015867	-0.039953	-2.2264E-05	0.24478	0.0001364	557.2495388817894	88.156	0.73737	88.128	87.738	88.476	-0.027664	0.0077112	-0.00050893	NaN	94.006	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161870			16950	18245	11851	11874				565			-0.0668960228231299
FLWDDSMAL	9	Oxidation (M)	_FLWDDSM(Oxidation (M))AL_					0	0	1		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.2497	1112.48485	0.85604	0.00047703	-0.73558	-0.0004099	0.12046	6.7126E-05	557.2490177080745	88.181	0.7991	88.2	87.87	88.669	0.018555	0.079228	-0.0012842	NaN	94.006	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178460			16951	18245	11851	11874				565			-0.0668960228231299
FLWDDSMAL	9	Oxidation (M)	_FLWDDSM(Oxidation (M))AL_					0	0	1		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.2497	1112.48485	-0.40169	-0.00022384	1.2454	0.00069401	0.84373	0.00047017	557.2502877798897	88.234	0.97331	88.063	87.741	88.714	-0.17053	-0.057356	0.00092362	NaN	94.006	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470410			16952	18245	11851	11874				565			-0.0668960228231299
FLWDDSMAL	9	Oxidation (M)	_FLWDDSM(Oxidation (M))AL_					0	0	1		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.2497	1112.48485	0.14928	8.3185E-05	0.73455	0.00040933	0.88383	0.00049251	557.249929578021	88.187	1.0227	88.056	87.803	88.825	-0.13135	-0.064841	0.00035426	NaN	94.006	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442010			16953	18245	11851	11874				565			-0.0668960228231299
FLWGLLALL	9	Unmodified	_FLWGLLALL_					0	0	0		ENST00000478830.1_1_3:108541759-108557851:+|nuORF;ENST00000493604.5_1_3:108541759-108565993:+|nuORF;ENSG00000163519|ENST00000295756|TRAT1;ENST00000484927.5_1_3:108541759-108565958:+|nuORF	ENST00000478830.1_1_3:108541759-108557851:+|nuORF	ENST00000478830.1_1_3:108541759-108557851:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.313720703125	2	523.325871	1044.63719	-0.45764	-0.00023949	-3.6825	-0.0019272	-4.1401	-0.0021666	523.3237419327488	73.783	0.37321	73.512	73.204	73.577	-0.27126					13	9	2	0	0	0	0.024475	1	8935	8935		29.842	0	1	269200			16954	7095	11852	11875	18946	18946					0.1166558624740901
FLWPGLNVPL	10	Unmodified	_FLWPGLNVPL_					0	0	0		nc|ENSG00000144029|P82675-2|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.8330078125	2	578.331685	1154.64882	0.095313	5.5122E-05	0.099243	5.7395E-05	0.19456	0.00011252	578.3314533860063	105.13	0.41925	105.01	104.77	105.19	-0.12444					25	12	3	0	0	0	0.72219	1	13085	13085		65.803	11.081	1	174520			16955	5712	11853	11876	18947	18947					0.07767783270764994
FLWPGLNVPL	10	Unmodified	_FLWPGLNVPL_					0	0	0		nc|ENSG00000144029|P82675-2|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3345336914062	2	578.331685	1154.64882	0.079615	4.6044E-05	-0.62962	-0.00036413	-0.55001	-0.00031809	578.3307562235289	105.24	0.48552	105.08	104.7	105.18	-0.16484					38	19	3	0	0	0	0.9856	1	13087	13087		47.916	0.25827	1	187850			16956	5712	11853	11876	18948	18948					0.07767783270764994
FLWPGLNVPL	10	Unmodified	_FLWPGLNVPL_					0	0	0		nc|ENSG00000144029|P82675-2|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.331685	1154.64882	-0.661	-0.00038228	1.2086	0.00069897	0.54759	0.00031669	578.332515842446	105.33	0.4095	105.33	105.24	105.65	0	0.21477	0.0007634	NaN	65.803	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119350			16957	5712	11853	11876							0.07767783270764994
FLYAFIGVK	9	Unmodified	_FLYAFIGVK_					0	0	0		ENSG00000126353|ENST00000246657|CCR7	ENSG00000126353|ENST00000246657|CCR7	ENSG00000126353|ENST00000246657|CCR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3003540039062	2	529.307678	1056.6008	-1.8511	-0.00097978	4.316	0.0022845	2.4649	0.0013047	529.3098161144912	30.212	0.61362	30.212	29.895	30.508	0					24	14	2	0	0	0	0.024497	1	1923	1923		28.254	11.781	1	137100			16958	4196	11854	11877	18949	18949					0.07476709350703459
FLYAFLDDN	9	Unmodified	_FLYAFLDDN_					0	0	0		ENSG00000125522|ENST00000684052|NPBWR2	ENSG00000125522|ENST00000684052|NPBWR2	ENSG00000125522|ENST00000684052|NPBWR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.801025390625	2	559.263665	1116.51278	0.64011	0.00035799	2.2742	0.0012719	2.9143	0.0016298	559.2652535073441	85.857	1.4205	85.707	85.534	86.954	-0.14967					45	32	2	0	0	0	0.024021	1	10561	10561		68.787	0	1	57940			16959	4117	11855	11878	18950	18950					-0.040819560305635605
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7974853515625	2	540.797478	1079.5804	-0.27234	-0.00014728	-0.81305	-0.00043969	-1.0854	-0.00058697	540.7975993921657	77.236	0.99366	77.236	76.882	77.876	0					98	23	6	0	0	0	0.32257	1	9552	9552		72.62	20.321	1	1548400			16960	4571	11856	11879	18951	18951					0.04379538690886875
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7973022460938	2	540.797478	1079.5804	-0.79863	-0.0004319	-0.29514	-0.00015961	-1.0938	-0.00059151	540.7978535656769	77.273	0.96719	77.287	76.978	77.945	0.013496					85	22	6	0	0	0	0.14584	1	9476	9476		100.36	39.957	1	1607100			16961	4571	11856	11879	18952	18952					0.04379538690886875
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7975463867188	2	540.797478	1079.5804	-0.090997	-4.9211E-05	0.30772	0.00016642	0.21672	0.0001172	540.7975130489131	77.376	0.96463	77.114	76.854	77.818	-0.26202					60	23	4	0	0	0	0.084323	3	9218	9207;9218;9233		116.12	39.957	1	2597100			16962	4571	11856	11879	18953;18954;18955	18954					0.04379538690886875
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.7965087890625	2	540.797478	1079.5804	0.52954	0.00028638	-0.43965	-0.00023776	0.089893	4.8614E-05	540.7971007680984	77.369	0.94785	77.127	76.832	77.78	-0.24232					62	23	3	0	0	0	0.14584	3	9204	9204;9214;9229		100.36	15.445	1	3228300			16963	4571	11856	11879	18956;18957;18958	18956					0.04379538690886875
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.797119140625	2	540.797478	1079.5804	-1.2432	-0.00067233	1.0439	0.00056454	-0.19932	-0.00010779	540.7979791589204	77.193	1.1209	77.031	76.7	77.821	-0.16196					69	26	3	0	0	0	0.14584	2	9180	9180;9194		100.36	29.064	1	2968200			16964	4571	11856	11879	18959;18960	18959					0.04379538690886875
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	585.2831420898438	2	585.28292	1168.55129	-1.393	-0.00081532	1.2407	0.00072618	-0.15231	-8.9145E-05	585.2836317850736	50.735	1.4603	50.735	50.411	51.871	0					127	41	5	0	0	0	0.013924	5	5353	5318;5329;5341;5353;5366		167.23	89.911	1	18064000			16965	18271;1599	11857	11880	18961;18962;18963;18964;18965	18964					-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	585.2828979492188	2	585.28292	1168.55129	-1.2955	-0.00075823	1.0366	0.00060672	-0.25886	-0.00015151	585.2835042794492	50.925	1.3485	50.776	50.46	51.809	-0.14915					125	38	5	0	0	0	0.020687	5	5359	5324;5335;5347;5359;5371		148.99	69.274	1	18590000			16966	18271;1599	11857	11880	18966;18967;18968;18969;18970	18969					-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	585.2837524414062	2	585.28292	1168.55129	0.21214	0.00012416	-0.36276	-0.00021232	-0.15063	-8.816E-05	585.2827124590191	50.559	1.7345	50.64	50.148	51.883	0.08099					135	49	5	0	0	0	0.043667	6	5255	5220;5232;5242;5255;5267;5281		131.03	61.404	1	17690000			16967	18271;1599	11857	11880	18971;18972;18973;18974;18975;18976	18974					-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2814331054688	2	585.28292	1168.55129	0.31206	0.00018265	0.037388	2.1883E-05	0.34945	0.00020453	585.2828750619565	50.865	1.2401	50.753	50.563	51.803	-0.11163					98	32	4	0	0	0	0.1158	2	5207	5207;5220		107.01	39.514	1	8097000			16968	18271;1599	11857	11880	18977;18978	18977					-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.2833862304688	2	585.28292	1168.55129	-0.67361	-0.00039425	1.075	0.00062915	0.40134	0.0002349	585.2835500400347	51.122	1.4935	50.846	50.48	51.974	-0.27643					69	39	4	0	0	0	0.057894	3	5224	5224;5236;5250		125.81	37.585	1	7690500			16969	18271;1599	11857	11880	18979;18980;18981	18979					-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.28173828125	2	585.28292	1168.55129	0.16961	9.9272E-05	0.15981	9.3532E-05	0.32942	0.0001928	585.2829859978439	50.959	1.2461	50.778	50.572	51.818	-0.18071					89	32	4	0	0	0	0.2101	3	5206	5206;5218;5230		87.696	25.589	1	9209500			16970	18271;1599	11857	11880	18982;18983;18984	18982					-0.02624650396069228
FLYDLLQL	8	Unmodified	_FLYDLLQL_					0	0	0		nc|ENSG00000138964|Q9HBI0-5|PARVG;ENST00000471836.1_1_22:44577677-44581773:+|nuORF;ENST00000475485.6_1_22:44577677-44582522:+|nuORF;nc|ENSG00000138964|Q9HBI0-4|PARVG;ENST00000453888.7_1_22:44568882-44582522:+|nuORF;nc|ENSG00000138964|Q9HBI0-3|PARVG;nc|ENSG00000138964|Q9HBI0-2|PARVG;ENSG00000138964|ENST00000444313|PARVG	nc|ENSG00000138964|Q9HBI0-5|PARVG	nc|ENSG00000138964|Q9HBI0-5|PARVG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.78857421875	2	512.789318	1023.56408	-0.042215	-2.1648E-05	-4.3284	-0.0022196	-4.3707	-0.0022412	512.7870450466863	71.371	0.99565	71.109	70.602	71.598	-0.26199					42	23	2	0	0	0	0.68535	1	8333	8333		68.485	9.7027	1	6164100			16971	5294	11858	11881	18985	18985					0.05324412734148609
FLYETNKVAR	10	Unmodified	_FLYETNKVAR_					0	0	0		ENST00000548191.1_2_12:110489060-110511384:-|nuORF	ENST00000548191.1_2_12:110489060-110511384:-|nuORF	ENST00000548191.1_2_12:110489060-110511384:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.9058532714844	3	414.227667	1239.66117	-0.016708	-6.9209E-06	3.7868	0.0015686	3.7701	0.0015617	414.22946014756667	21.167	0.43327	21.076	20.675	21.109	-0.090092					11	8	2	0	0	0	0.03519	1	620	620		14.086	0	1	23578			16972	16547	11859	11882	18986	18986					0.05092774943113909
FLYFQCFL	8	Unmodified	_FLYFQCFL_					0	0	0		ENST00000491031.5_1_2:25016788-25038721:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2645874023438	2	540.764789	1079.51502	-0.59366	-0.00032103	-0.046487	-2.5139E-05	-0.64014	-0.00034617	540.7645180604252	77.016	0.58351	77.029	76.777	77.361	0.013504					26	13	3	0	0	0	0.88442	2	9422	9422;9428		52.299	6.7195	1	562280			16973	15449	11860	11883	18987;18988	18987					-0.02155198826449123
FLYFQCFL	8	Unmodified	_FLYFQCFL_					0	0	0		ENST00000491031.5_1_2:25016788-25038721:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.764789	1079.51502	-0.099464	-5.3787E-05	-1.5513	-0.00083887	-1.6507	-0.00089266	540.7639570501817	76.955	0.45245	76.955	76.799	77.252	0	-0.037275	-0.00078665	NaN	52.299	21	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530190			16974	15449	11860	11883							-0.02155198826449123
FLYGSFYY	8	Unmodified	_FLYGSFYY_					0	0	0		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.8134155273438	2	530.244744	1058.47493	0.38263	0.00020289	-0.97517	-0.00051708	-0.59254	-0.00031419	530.2441269710605	77.484	1.5132	77.242	76.952	78.465	-0.24232					50	36	2	0	0	0	0.027866	1	9282	9282		37.028	19.664	1	214160			16975	7767	11861	11884	18989	18989					-0.051964222253900516
FLYGVFPVAPG	11	Unmodified	_FLYGVFPVAPG_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3365478515625	2	583.815867	1165.61718	-0.32642	-0.00019057	-0.98846	-0.00057708	-1.3149	-0.00076765	583.8155968771074	73.724	0.19496	73.447	73.327	73.522	-0.2769					6	4	2	0	0	0	0.024733	1	8676	8676		24.203	6.8378	1	69083			16976	7059	11862	11885	18990	18990					0.04099790516806934
FLYGVFPVAPG	11	Unmodified	_FLYGVFPVAPG_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	583.815867	1165.61718	-1.4208	-0.00082947	1.438	0.00083951	0.017205	1.0045E-05	583.8164405129468	73.421	0.47052	73.421	73.146	73.617	0	-0.02114	-0.0012419	NaN	24.203	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234900			16977	7059	11862	11885							0.04099790516806934
FLYGVFPVAPG	11	Unmodified	_FLYGVFPVAPG_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	583.815867	1165.61718	-1.176	-0.00068654	1.3996	0.00081709	0.2236	0.00013054	583.8165925750084	73.781	0.44781	73.51	73.241	73.688	-0.27126	0.068202	-0.0012868	NaN	24.203	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1300800			16978	7059	11862	11885							0.04099790516806934
FLYGVFPVAPG	11	Unmodified	_FLYGVFPVAPG_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	583.815867	1165.61718	0.077804	4.5423E-05	0.56571	0.00033027	0.64351	0.00037569	583.8158993103616	73.456	0.53189	73.466	73.145	73.677	0.0096512	0.024286	-0.0022604	NaN	24.203	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1230600			16979	7059	11862	11885							0.04099790516806934
FLYISVRALGL	11	Unmodified	_FLYISVRALGL_					0	0	0		Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|87|1|anti-sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|87|1|anti-sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|87|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	418.7530212402344	3	417.920174	1250.73869	-0.027003	-1.1285E-05	1.1048	0.00046172	1.0778	0.00045043	417.92053467025414	45.77	1.5656	45.673	45.224	46.789	-0.096649					137	43	4	0	0	0	0.024759	1	4338	4338		23.378	0	1	2369700			16980	38073	11863	11886	18991	18991					0.123354128793153
FLYKIIDEL	9	Unmodified	_FLYKIIDEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3285522460938	2	577.328808	1152.64306	-0.19963	-0.00011525	-0.29155	-0.00016832	-0.49119	-0.00028358	577.3282436754386	78.99	1.5133	78.758	78.176	79.689	-0.23141					79	35	4	0	0	0	0.094442	1	9439	9439		112.41	10.81	1	933830			16981	7065	11864	11887	18992	18992					0.07284639968452211
FLYKIIDEL	9	Unmodified	_FLYKIIDEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.3282470703125	2	577.328808	1152.64306	-0.1805	-0.00010421	-0.4767	-0.00027521	-0.6572	-0.00037942	577.328229629786	78.894	1.6483	78.738	78.17	79.818	-0.15591					80	38	3	0	0	0	0.12914	1	9411	9411		104.06	10.861	1	891180			16982	7065	11864	11887	18993	18993					0.07284639968452211
FLYLLYVYLL	10	Unmodified	_FLYLLYVYLL_					0	0	0			REV__ENSG00000109501|ENST00000226760|WFS1	REV__ENSG00000109501|ENST00000226760|WFS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.24346923828125	3	440.593176	1318.7577	-0.85343	-0.00037601	4.1169	0.0018139	3.2634	0.0014378	440.5949548670215	25.382	0.6341	25.155	24.842	25.476	-0.22683					25	14	2	0	0	0	0.03519	1	1205	1205		12.812	0	1	169890	+		16983	21797	11865	11888	18994	18994					0.11106949450390857
FLYNGLLSI	9	Unmodified	_FLYNGLLSI_					0	0	0		ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-2|TAS1R1	ENSG00000173662|ENST00000333172|TAS1R1	ENSG00000173662|ENST00000333172|TAS1R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.29248046875	2	520.294768	1038.57498	-0.22012	-0.00011453	-3.5296	-0.0018364	-3.7497	-0.001951	520.2927910352751	72.974	0.63861	72.984	72.652	73.29	0.0096512					40	15	4	0	0	0	0.39228	1	8819	8819		66.429	2.222	1	1311100			16984	8396	11866	11889	18995	18995					0.057238151084447964
FLYNLSFIDFC	11	Unmodified	_FLYNLSFIDFC_					0	0	0		ENSG00000197125|ENST00000642064|OR8B8	ENSG00000197125|ENST00000642064|OR8B8	ENSG00000197125|ENST00000642064|OR8B8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.257568359375	3	461.221413	1380.64241	-0.18842	-8.6904E-05	-3.0431	-0.0014035	-3.2315	-0.0014904	461.2204277441478	37.811	0.40553	37.632	37.404	37.809	-0.17929					20	10	3	0	0	0	0.024736	1	3073	3073		31.634	0	1	381360			16985	9959	11867	11890	18996	18996					-0.03268522742928326
FLYPELLIN	9	Unmodified	_FLYPELLIN_					0	0	0			REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.279541015625	2	561.3157	1120.61685	0.36662	0.00020579	2.4102	0.0013529	2.7768	0.0015587	561.3176800305412	84.905	0.25507	84.768	84.533	84.789	-0.13753					9	5	2	0	0	0	0.024381	1	10260	10260		45.952	5.3793	1	166760	+		16986	20104	11868	11891	18997	18997					0.06136370796980373
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8099975585938	2	540.810054	1079.60555	0.50335	0.00027221	-0.60991	-0.00032985	-0.10656	-5.7631E-05	540.8096492664023	107.11	0.65745	107.11	106.84	107.49	0					65	17	5	0	0	0	0.084323	7	13744	13734;13744;13754;13765;13777;13788;13800		116.12	43.435	1	6093300			16987	7568	11869	11892	18998;18999;19000;19001;19002;19003;19004	18999					0.06893593493464323
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8095703125	2	540.810054	1079.60555	-0.44698	-0.00024173	0.48546	0.00026254	0.038482	2.0811E-05	540.8101743529284	107.05	0.68158	107.05	106.8	107.48	-0.003479					77	21	5	0	0	0	0.084323	2	13708	13698;13708		116.12	39.275	1	4234000			16988	7568	11869	11892	19005;19006	19006					0.06893593493464323
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8102416992188	2	540.810054	1079.60555	-0.66561	-0.00035997	0.52145	0.00028201	-0.14415	-7.796E-05	540.8102446000194	107.2	0.57375	107.2	106.92	107.5	0.0018311					60	15	5	0	0	0	0.084323	2	13678	13678;13689		116.12	36.182	1	5795900			16989	7568	11869	11892	19007;19008	19007					0.06893593493464323
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8101196289062	2	540.810054	1079.60555	-0.37787	-0.00020435	0.45774	0.00024755	0.07987	4.3195E-05	540.8101919397197	106.94	0.80251	106.82	106.55	107.35	-0.1238					92	26	4	0	0	0	0.14584	10	13287	13279;13287;13296;13303;13313;13324;13335;13343;13350;13356		100.36	50.336	1	5187000			16990	7568	11869	11892	19009;19010;19011;19012;19013;19014;19015;19016;19017;19018	19010					0.06893593493464323
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.8103637695312	2	540.810054	1079.60555	-1.5215	-0.00082284	1.5677	0.00084781	0.046165	2.4967E-05	540.8108042288368	107.02	0.75916	106.88	106.59	107.35	-0.1346					118	31	5	0	0	0	0.084323	5	13280	13274;13280;13289;13298;13308		116.12	44.744	1	5718900			16991	7568	11869	11892	19019;19020;19021;19022;19023	19020					0.06893593493464323
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.81005859375	2	540.810054	1079.60555	-0.27816	-0.00015043	0.24675	0.00013344	-0.031416	-1.699E-05	540.8101018165323	107.02	0.73947	106.86	106.6	107.34	-0.15772					99	29	5	0	0	0	0.14584	4	13273	13273;13281;13291;13299		100.36	28.982	1	5309900			16992	7568	11869	11892	19024;19025;19026;19027	19024					0.06893593493464323
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.276611328125	2	557.276772	1112.53899	0.28184	0.00015706	-0.93985	-0.00052376	-0.65801	-0.0003667	557.2761355707531	77.322	1.2841	77.322	76.998	78.282	0					100	30	5	0	0	0	0.010583	5	9542	9533;9542;9556;9567;9579		231.3	122.44	1	9817700			16993	4694;1282	11870	11893	19028;19029;19030;19031;19032	19029					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.2765502929688	2	557.276772	1112.53899	-0.053141	-2.9614E-05	-0.65585	-0.00036549	-0.70899	-0.0003951	557.2763157930975	77.517	1.203	77.307	76.954	78.157	-0.21087					94	28	5	0	0	0	0.012289	6	9531	9523;9531;9543;9555;9568;9583		227.71	129.08	1	9592600			16994	4694;1282	11870	11893	19033;19034;19035;19036;19037;19038	19034					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.2764892578125	2	557.276772	1112.53899	0.079362	4.4227E-05	-0.83537	-0.00046553	-0.756	-0.0004213	557.2762125206583	77.325	1.2519	77.339	77.021	78.272	0.013496					101	29	5	0	0	0	0.013333	5	9466	9458;9466;9479;9491;9505		211.39	115.34	1	10176000			16995	4694;1282	11870	11893	19039;19040;19041;19042;19043	19040					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.2766723632812	2	557.276772	1112.53899	0.029575	1.6482E-05	0.18394	0.00010251	0.21352	0.00011899	557.2767398465583	77.596	1.0641	77.334	77.099	78.163	-0.26202					68	24	4	0	0	0	0.013887	3	9236	9215;9225;9236		180.93	98.176	1	3128500			16996	4694;1282	11870	11893	19044;19045;19046	19046					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2769165039062	2	557.276772	1112.53899	0.87899	0.00048984	-0.60993	-0.0003399	0.26906	0.00014994	557.2762612312835	77.558	1.0816	77.315	77.041	78.123	-0.24233					70	25	5	0	0	0	0.013887	3	9233	9223;9233;9244		180.93	86.92	1	3020500			16997	4694;1282	11870	11893	19047;19048;19049	19048					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.2767333984375	2	557.276772	1112.53899	-0.4514	-0.00025156	0.59832	0.00033343	0.14692	8.1875E-05	557.2769244522124	77.441	1.1399	77.279	77.024	78.164	-0.16196					65	26	3	0	0	0	0.014034	4	9201	9190;9201;9210;9223		166.68	83.391	1	2399000			16998	4694;1282	11870	11893	19050;19051;19052;19053	19051					-0.012776868590890444
FLYSPDILI	9	Unmodified	_FLYSPDILI_					0	0	0		ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8033447265625	2	540.802426	1079.5903	0.043838	2.3708E-05	0.1081	5.8458E-05	0.15193	8.2166E-05	540.8021683709321	96.23	1.0643	96.237	95.905	96.969	0.0065002					54	24	4	0	0	0	0.15889	1	12253	12253		97.473	17.533	1	571820			16999	14153	11871	11894	19054	19054					0.053686819056110835
FLYSPDILI	9	Unmodified	_FLYSPDILI_					0	0	0		ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8033447265625	2	540.802426	1079.5903	0.33249	0.00017981	-0.34784	-0.00018811	-0.015344	-8.2983E-06	540.8019875021024	96.339	1.0665	96.341	95.994	97.06	0.0020676					53	24	3	0	0	0	0.088511	1	12205	12205		114.59	43.208	1	685630			17000	14153	11871	11894	19055	19055					0.053686819056110835
FLYSPDILI	9	Unmodified	_FLYSPDILI_					0	0	0		ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.802426	1079.5903	0.03356	1.8149E-05	0.078838	4.2636E-05	0.1124	6.0785E-05	540.8021788971593	96.171	0.97887	96.034	95.767	96.746	-0.1367	-0.15881	-0.00028208	NaN	114.59	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456260			17001	14153	11871	11894							0.053686819056110835
FLYSPDILI	9	Unmodified	_FLYSPDILI_					0	0	0		ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.802426	1079.5903	0.4905	0.00026526	-0.21076	-0.00011398	0.27974	0.00015128	540.8020447037698	96.216	1.0247	96.093	95.771	96.796	-0.12305	-0.099773	-0.00059531	NaN	114.59	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523060			17002	14153	11871	11894							0.053686819056110835
FLYSPDILI	9	Unmodified	_FLYSPDILI_					0	0	0		ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	ENST00000429705.6_1_3:43328077-43344643:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.802426	1079.5903	-1.1272	-0.00060959	1.1367	0.00061471	0.0094495	5.1103E-06	540.8028173925888	96.292	1.1145	96.136	95.707	96.822	-0.15646	-0.056955	0.00086206	NaN	114.59	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547080			17003	14153	11871	11894							0.053686819056110835
FLYVISSKKPK	11	Unmodified	_FLYVISSKKPK_					0	0	0			REV__ENST00000381883.3_1_9:4663374-4663566:+|nuORF	REV__ENST00000381883.3_1_9:4663374-4663566:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2454528808594	3	437.267463	1308.78056	-0.30715	-0.00013431	1.4643	0.0006403	1.1572	0.00050599	437.2681131312887	51.489	1.1214	51.342	50.759	51.881	-0.14735					88	31	4	0	0	0	0.024828	1	5525	5525		5.6988	2.0797	1	833270	+		17004	31529	11872	11895	19056	19056					0.1385196856786024
FLYYDSEST	9	Unmodified	_FLYYDSEST_					0	0	0			REV__nc|ENSG00000211817|A0JD32|TRAV38-2DV8	REV__nc|ENSG00000211817|A0JD32|TRAV38-2DV8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7939453125	2	562.742762	1123.47097	-0.082195	-4.6254E-05	-2.6491	-0.0014908	-2.7313	-0.001537	562.7414467063555	52.7	0.27657	52.441	52.287	52.564	-0.25838					11	6	2	0	0	0	0.024436	1	5454	5454		30.504	14.03	1	130600	+		17005	37115	11873	11896	19057	19057					-0.08582556509736605
FLYYHVCC	8	Unmodified	_FLYYHVCC_					0	0	0		ENST00000572856.1_1_18:3607136-3607283:+|nuORF	ENST00000572856.1_1_18:3607136-3607283:+|nuORF	ENST00000572856.1_1_18:3607136-3607283:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.27734375	2	524.224974	1046.43539	-0.43504	-0.00022806	2.8624	0.0015006	2.4274	0.0012725	524.2262857672324	55.462	2.3237	55.246	54.386	56.709	-0.21551					120	62	3	0	0	0	0.027866	1	6136	6136		33.493	0	1	1388900			17006	17063	11874	11897	19058	19058					-0.08596588772093128
FMFDEKLVTV	10	Unmodified	_FMFDEKLVTV_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	614.8185424804688	2	614.81775	1227.62095	0.41849	0.00025729	0.92758	0.00057029	1.3461	0.00082759	614.8180111822785	77.418	0.43803	77.175	77.009	77.447	-0.24232					14	10	2	0	0	0	0.75651	1	9222	9222		63.534	14.092	1	466530			17007	3737	11875	11898	19059	19059					0.01624092228325935
FMFDEKLVTV	10	Unmodified	_FMFDEKLVTV_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	614.81775	1227.62095	-0.387	-0.00023794	0.87586	0.0005385	0.48886	0.00030056	614.8179828499881	77.273	0.79287	77.273	77.04	77.833	0	0.021364	0.00021093	NaN	63.534	36	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472700			17008	3737	11875	11898							0.01624092228325935
FMFDEKLVTV	10	Unmodified	_FMFDEKLVTV_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	614.81775	1227.62095	0.069432	4.2688E-05	0.084402	5.1892E-05	0.15383	9.4579E-05	614.8175592034142	77.448	0.75018	77.237	76.995	77.745	-0.21087	-0.013925	-0.00076227	NaN	63.534	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437690			17009	3737	11875	11898							0.01624092228325935
FMFDEKLVTV	10	Unmodified	_FMFDEKLVTV_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	614.81775	1227.62095	-0.92277	-0.00056734	1.2052	0.00074097	0.28242	0.00017364	614.8182635925793	77.306	0.7151	77.319	77.062	77.777	0.013504	0.068221	0.00061589	NaN	63.534	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448150			17010	3737	11875	11898							0.01624092228325935
FMFDHPAKAM	10	Oxidation (M)	_FM(Oxidation (M))FDHPAKAM_		FM(1)FDHPAKAM		FM(61)FDHPAKAM(-61)	0	0	1			REV__nc|ENSG00000074603|Q6V1X1-6|DPP8	REV__nc|ENSG00000074603|Q6V1X1-6|DPP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.7744140625	2	605.772819	1209.53109	0.24949	0.00015113	1.7977	0.001089	2.0472	0.0012401	605.7737629045049	69.883	2.2667	69.59	67.896	70.163	-0.29292					146	59	4	0	0	0	0.74632	1	8432	8432		64.207	14.671	2	2444800	+		17011	20527	11876	11899	19060	19060		629			-0.06529860651880881
FMGGEKDTKW	10	Unmodified	_FMGGEKDTKW_					0	0	0			REV__ENST00000333461.5_1_17:37367130-37367274:-|nuORF	REV__ENST00000333461.5_1_17:37367130-37367274:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.783447265625	2	599.781699	1197.54884	-0.29713	-0.00017821	0.37106	0.00022256	0.073937	4.4346E-05	599.7817535756967	82.635	0.9937	82.454	82.114	83.107	-0.18079					58	22	4	0	0	0	0.85955	1	9991	9991		56.721	1.9987	1	2570400	+		17012	30504	11877	11900	19061	19061					-0.04202822125353123
FMIIPTLII	9	Oxidation (M)	_FM(Oxidation (M))IIPTLII_		FM(1)IIPTLII		FM(44)IIPTLII	0	0	1		ENSG00000130958|ENST00000253270|SLC35D2	ENSG00000130958|ENST00000253270|SLC35D2	ENSG00000130958|ENST00000253270|SLC35D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8267211914062	2	538.824846	1075.63514	-0.45321	-0.0002442	3.4939	0.0018826	3.0407	0.0016384	538.826664240235	55.111	1.017	54.881	54.601	55.618	-0.23087					71	28	3	0	0	0	0.72875	1	5915	5915		44.117	9.9443	1	7408700			17013	4479	11878	11901	19062	19062		178			0.10034789447308867
FMIIPTLII	9	Oxidation (M)	_FM(Oxidation (M))IIPTLII_		FM(1)IIPTLII		FM(53)IIPTLII	0	0	1		ENSG00000130958|ENST00000253270|SLC35D2	ENSG00000130958|ENST00000253270|SLC35D2	ENSG00000130958|ENST00000253270|SLC35D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8269653320312	2	538.824846	1075.63514	-0.58398	-0.00031466	3.7131	0.0020007	3.1291	0.001686	538.8267490736815	55.09	1.2157	54.884	54.502	55.718	-0.20613					83	33	4	0	0	0	0.59099	1	5873	5873		53.351	7.3792	1	7294600			17014	4479	11878	11901	19063	19063		178			0.10034789447308867
FMISESLLLAS	11	Unmodified	_FMISESLLLAS_					0	0	0		ENSG00000172199|ENST00000302270|OR8U1	ENSG00000172199|ENST00000302270|OR8U1	ENSG00000172199|ENST00000302270|OR8U1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2184753417969	3	404.21778	1209.63151	-0.56914	-0.00023006	1.787	0.00072234	1.2179	0.00049228	404.2184923782548	57.381	1.0168	57.148	56.805	57.822	-0.23363					83	26	5	0	0	0	1.0183	1	6239	6239		32.751	0	1	11765000			17015	8254	11879	11902	19064	19064					0.03508074882802248
FMKQYTEDM	9	Oxidation (M)	_FMKQYTEDM(Oxidation (M))_		FMKQYTEDM(1)		FM(-52)KQYTEDM(52)	0	0	1		ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS	ENSG00000164654|ENST00000340080|MIOS	ENSG00000164654|ENST00000340080|MIOS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.7513427734375	2	604.75175	1207.48895	-0.29399	-0.00017779	0.062285	3.7667E-05	-0.2317	-0.00014012	604.7515532332277	62.922	1.7409	62.664	62.448	64.188	-0.25824					102	47	3	0	0	0	0.39228	1	7089	7089		66.429	7.6473	2	3454400			17016	7303	11880	11903	19065	19065		304			-0.10649880850905902
FMLIDAGANI	10	Unmodified	_FMLIDAGANI_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.3399047851562	2	532.775885	1063.53722	-0.38336	-0.00020425	-2.766	-0.0014737	-3.1494	-0.0016779	532.7741911831621	97.894	0.46215	97.729	97.442	97.904	-0.1652					22	10	3	0	0	0	0.03519	1	12115	12115		64.207	23.429	1	186400	+		17017	22435	11881	11904	19066	19066					0.007989808513002572
FMLKKIVL	8	Unmodified	_FMLKKIVL_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.73779296875	2	496.322274	990.629995	-0.28561	-0.00014176	0.25058	0.00012437	-0.035034	-1.7388E-05	496.3222894929361	58.558	0.48338	58.37	58.18	58.663	-0.18795					21	11	2	0	0	0	0.027866	1	6459	6459		29.842	0	1	533650			17018	1933	11882	11905	19067	19067					0.13430530375342187
FMLKKIVL	8	Unmodified	_FMLKKIVL_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.73797607421875	2	496.322274	990.629995	0.53518	0.00026562	-0.31041	-0.00015406	0.22477	0.00011156	496.3219216385025	58.603	0.57087	58.361	58.129	58.7	-0.24165					25	13	3	0	0	0	0.027866	1	6458	6458		35.201	27.51	1	684980			17019	1933	11882	11905	19068	19068					0.13430530375342187
FMLPDPQNI	9	Unmodified	_FMLPDPQNI_					0	0	0		ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF;ENSG00000198860|ENST00000645668|TSEN15	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.327880859375	2	537.76806	1073.52157	-1.0469	-0.00056297	1.4144	0.0007606	0.36749	0.00019763	537.7685134257395	81.949	0.69833	81.974	81.66	82.358	0.025711					34	16	3	0	0	0	0.024261	1	10142	10142		37.812	0	1	399610			17020	10228	11883	11906	19069	19069					-0.012253056657300476
FMLTQPHSV	9	Unmodified	_FMLTQPHSV_					0	0	0		nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.267578125	2	530.268227	1058.5219	0.07455	3.9531E-05	0.033318	1.7667E-05	0.10787	5.7198E-05	530.2680430265556	53.009	0.69694	52.882	52.632	53.329	-0.12705					37	17	3	0	0	0	0.013065	2	5534	5534;5546		171.53	38.063	1	1604700			17021	18682	11884	11907	19070;19071	19070					-0.005018859458914449
FMLTQPHSV	9	Unmodified	_FMLTQPHSV_					0	0	0		nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2677612304688	2	530.268227	1058.5219	-0.08981	-4.7623E-05	-0.10643	-5.6439E-05	-0.19624	-0.00010406	530.2679969995276	53.218	0.61227	52.96	52.723	53.335	-0.25838					36	15	3	0	0	0	0.014034	2	5549	5549;5562		166.68	42.084	1	1813100			17022	18682	11884	11907	19072;19073	19072					-0.005018859458914449
FMLTQPHSV	9	Unmodified	_FMLTQPHSV_					0	0	0		nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	nc|ENSG00000211640|P01721|IGLV6-57	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2669067382812	2	530.268227	1058.5219	-0.017587	-9.3259E-06	-0.44934	-0.00023827	-0.46692	-0.00024759	530.2679647522124	53.082	0.80385	52.892	52.591	53.395	-0.18982					48	20	4	0	0	0	0.016758	1	5545	5545		153.04	53.661	1	2394900			17023	18682	11884	11907	19074	19074					-0.005018859458914449
FMPLLFAIT	9	Unmodified	_FMPLLFAIT_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.796875	2	526.796089	1051.57763	0.18493	9.7422E-05	1.9296	0.0010165	2.1145	0.0011139	526.7969166077293	78.992	0.92458	78.841	78.563	79.487	-0.15067					55	21	4	0	0	0	0.36105	1	9430	9430		68.485	10.673	1	904260	+		17024	24436	11885	11908	19075	19075					0.05389947241724258
FMPLLFAIT	9	Unmodified	_FMPLLFAIT_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	526.796089	1051.57763	0.18529	9.761E-05	2.0012	0.0010542	2.1865	0.0011518	526.7969624843922	79.117	1.3094	78.863	78.212	79.522	-0.25471	0.013047	-2.7702E-05	NaN	68.485	60	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	815980	+		17025	24436	11885	11908							0.05389947241724258
FMPLLFAIT	9	Unmodified	_FMPLLFAIT_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	526.796089	1051.57763	0.063463	3.3432E-05	2.1401	0.0011274	2.2036	0.0011608	526.797050908111	79.076	0.87851	78.845	78.52	79.398	-0.23141	-0.0045249	0.00011866	NaN	68.485	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	841600	+		17026	24436	11885	11908							0.05389947241724258
FMPLLFAIT	9	Unmodified	_FMPLLFAIT_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	526.796089	1051.57763	0.18493	9.7422E-05	1.9296	0.0010165	2.1145	0.0011139	526.7969166077293	78.992	0.92458	78.841	78.563	79.487	-0.15067	-0.0085223	-0.00010311	NaN	68.485	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904260	+		17027	24436	11885	11908							0.05389947241724258
FMRPHLEPLA	10	Unmodified	_FMRPHLEPLA_					0	0	0		HSPB7|p.S60L|1|0.35|ENSG00000173641|chr1:16017785-16017785|G/A|missense_variant	HSPB7|p.S60L|1|0.35|ENSG00000173641|chr1:16017785-16017785|G/A|missense_variant	HSPB7|p.S60L|1|0.35|ENSG00000173641|chr1:16017785-16017785|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.21820068359375	3	404.218226	1209.63285	1.0514	0.00042499	-1.0326	-0.0004174	0.018776	7.5896E-06	404.21777515581726	57.25	1.112	57.048	56.747	57.859	-0.20208					101	29	5	0	0	0	1.0997	1	6275	6275		32.751	4.669	1	15287000			17028	17754	11886	11909	19076	19076					0.03641753762212829
FMSNFLESWL	10	Unmodified	_FMSNFLESWL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.1930847167969	3	425.202242	1272.5849	-0.36353	-0.00015457	-1.0858	-0.00046167	-1.4493	-0.00061624	425.2012749395588	34.442	0.91194	34.266	33.934	34.846	-0.17557					53	22	5	0	0	0	1.0447	1	2525	2525		40.058	3.7405	1	1512300	+		17029	21973	11887	11910	19077	19077					-0.04049364948514267
FMVLAVLLI	9	Oxidation (M)	_FM(Oxidation (M))VLAVLLI_		FM(1)VLAVLLI		FM(86)VLAVLLI	0	0	1			REV__ENSG00000141574|ENST00000269389|SECTM1	REV__ENSG00000141574|ENST00000269389|SECTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.8201904296875	2	517.819564	1033.62458	0.11782	6.1008E-05	-3.4154	-0.0017686	-3.2976	-0.0017076	517.8176026656681	105.55	0.70149	105.55	105.28	105.98	0					59	20	5	0	0	0	0.22343	1	13537	13537		85.909	22.931	1	1058300	+		17030	24108	11888	11911	19078	19078		716			0.10910806792890071
FMVLAVLLI	9	Oxidation (M)	_FM(Oxidation (M))VLAVLLI_		FM(1)VLAVLLI		FM(49)VLAVLLI	0	0	1			REV__ENSG00000141574|ENST00000269389|SECTM1	REV__ENSG00000141574|ENST00000269389|SECTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.8197631835938	2	517.819564	1033.62458	-0.34751	-0.00017995	-2.9129	-0.0015084	-3.2604	-0.0016883	517.8179162661872	105.6	0.71975	105.6	105.38	106.1	0.00014496					57	24	3	0	0	0	0.65391	1	13496	13496		49.211	10.189	1	1049200	+		17031	24108	11888	11911	19079	19079		716			0.10910806792890071
FMVPYFGRHG	10	Oxidation (M)	_FM(Oxidation (M))VPYFGRHG_		FM(1)VPYFGRHG		FM(53)VPYFGRHG	0	0	1		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.7952880859375	2	613.792401	1225.57025	2.6545	0.0016293	1.8883	0.001159	4.5428	0.0027883	613.7934659779851	18.596	0.39927	18.354	18.124	18.524	-0.24256					17	7	3	0	0	0	0.91051	1	298	298		53.351	15.54	1	137350			17032	18734	11889	11912	19080	19080		593			-0.03351392305989975
FMVPYFGRHG	10	Oxidation (M)	_FM(Oxidation (M))VPYFGRHG_					0	0	1		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	613.792401	1225.57025	-0.36418	-0.00022353	4.3925	0.0026961	4.0283	0.0024725	613.7952608290069	18.527	0.69212	18.371	18.197	18.889	-0.15637	0.0018547	0.0015702	NaN	53.351	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85473			17033	18734	11889	11912				593			-0.03351392305989975
FMVPYFGRHG	10	Oxidation (M)	_FM(Oxidation (M))VPYFGRHG_					0	0	1		nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	613.792401	1225.57025	-0.11117	-6.8236E-05	4.5864	0.0028151	4.4753	0.0027469	613.7951935358518	18.586	0.54486	18.382	18.113	18.658	-0.20371	0.013069	0.0018083	NaN	53.351	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73519			17034	18734	11889	11912				593			-0.03351392305989975
FMYDRPLRL	9	Oxidation (M)	_FM(Oxidation (M))YDRPLRL_		FM(1)YDRPLRL		FM(46)YDRPLRL	0	0	1		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.5500183105469	3	409.549864	1225.62776	0.6906	0.00028283	-0.67136	-0.00027495	0.019244	7.8814E-06	409.54958284219606	53.184	1.0153	53.184	52.711	53.726	0					106	27	5	0	0	0	0.70156	1	5708	5708		45.972	9.5255	1	10019000			17035	7065	11890	11913	19081	19081		297			0.023974498995585236
FMYDRPLRL	9	Oxidation (M)	_FM(Oxidation (M))YDRPLRL_		FM(1)YDRPLRL		FM(60)YDRPLRL	0	0	1		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5501403808594	3	409.549864	1225.62776	0.85681	0.00035091	-0.87695	-0.00035915	-0.020136	-8.2465E-06	409.54949090781156	52.989	2.3405	53.085	52.606	54.946	0.095669					131	65	4	0	0	0	0.48817	1	5632	5632		60.118	15.479	1	9425400			17036	7065	11890	11913	19082	19082		297			0.023974498995585236
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8238525390625	2	605.823701	1209.63285	-1.2329	-0.00074694	1.4001	0.00084821	0.16716	0.00010127	605.8242671403812	57.236	0.90194	57.068	56.823	57.725	-0.1672					57	23	4	0	0	0	0.247	1	6248	6248		76.774	5.4784	1	1977800			17037	7065	11890	11914	19083	19083					0.03641753762190092
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2186584472656	3	404.218226	1209.63285	-0.029884	-1.208E-05	0.1101	4.4504E-05	0.080214	3.2424E-05	404.21827196086645	57.238	1.0137	57.071	56.751	57.764	-0.1672					88	26	5	0	0	0	0.91321	1	6256	6256		31.53	1.9791	1	13924000			17038	7065	11890	11914	19084	19084					0.03641753762190092
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8233642578125	2	605.823701	1209.63285	-0.13609	-8.2445E-05	0.056897	3.447E-05	-0.07919	-4.7975E-05	605.8236098437244	57.241	0.95467	57.039	56.783	57.738	-0.20209					57	25	4	0	0	0	0.84115	1	6253	6253		21.96	0	1	2291700			17039	7065	11890	11914	19085	19085					0.03641753762190092
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8240966796875	2	605.823701	1209.63285	-0.57982	-0.00035127	0.54704	0.00033141	-0.032775	-1.9856E-05	605.8238924487705	57.376	0.82377	57.142	56.878	57.702	-0.23363					62	21	4	0	0	0	0.32064	2	6247	6247;6259		56.721	5.3856	1	2203500			17040	7065	11890	11914	19086;19087	19086					0.03641753762190092
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2188720703125	3	404.218226	1209.63285	-0.56914	-0.00023006	0.68413	0.00027654	0.11499	4.6482E-05	404.2184923782548	57.381	1.0168	57.148	56.805	57.822	-0.23363					83	26	5	0	0	0	0.82115	2	6262	6250;6262		37.812	4.9991	1	11765000			17041	7065	11890	11914	19088;19089	19089					0.03641753762190092
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	605.823701	1209.63285	-1.384	-0.00083844	-0.52687	-0.00031919	-1.9108	-0.0011576	605.8242172615799	56.955	0.3706	57.051	56.911	57.281	0.095306	-0.024348	-0.0014569	NaN	76.774	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116060			17042	7065	11890	11914							0.03641753762190092
FNAPLPTDI	9	Unmodified	_FNAPLPTDI_					0	0	0		ENSG00000042980|ENST00000265769|ADAM28;nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENST00000520448.5_1_8:24181385-24209525:+|nuORF	ENSG00000042980|ENST00000265769|ADAM28	ENSG00000042980|ENST00000265769|ADAM28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7830505371094	2	494.260925	986.507297	-0.21912	-0.0001083	-1.9821	-0.00097965	-2.2012	-0.001088	494.2593126825694	83.15	2.0039	83.15	81.95	83.954	0					75	46	3	0	0	0	0.024021	1	10337	10337		58.782	4.0056	1	496000			17043	1084	11891	11915	19090	19090					0.01350365177609092
FNCLATKKA	9	Unmodified	_FNCLATKKA_					0	0	0			REV__ENSG00000144227|ENST00000272641|NXPH2	REV__ENSG00000144227|ENST00000272641|NXPH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.2725830078125	2	498.27077	994.526987	-0.18626	-9.2806E-05	3.6762	0.0018317	3.4899	0.0017389	498.27259145400035	24.927	0.78057	24.752	24.296	25.077	-0.17484					32	17	3	0	0	0	0.80003	1	1134	1134		39.253	2.0937	1	657550	+		17044	24317	11892	11916	19091	19091					0.029504179167247457
FNCLATKKA	9	Unmodified	_FNCLATKKA_					0	0	0			REV__ENSG00000144227|ENST00000272641|NXPH2	REV__ENSG00000144227|ENST00000272641|NXPH2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	498.27077	994.526987	-0.60178	-0.00029985	4.2592	0.0021222	3.6574	0.0018224	498.2728608118492	25.19	0.56574	24.963	24.665	25.231	-0.22683	0.10529	0.00027147	NaN	39.253	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603640	+		17045	24317	11892	11916							0.029504179167247457
FNCTGDIPDI	10	Unmodified	_FNCTGDIPDI_					0	0	0			REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3038330078125	2	547.744782	1093.47501	-1.5108	-0.00082754	2.8125	0.0015405	1.3017	0.000713	547.7457972450335	35.489	1.5613	35.467	35.308	36.869	-0.021767					48	41	2	0	0	0	0.03519	1	2949	2949		39.253	12.56	1	276000	+		17046	24079	11893	11917	19092	19092					-0.06798790287712109
FNCTGDIPDI	10	Unmodified	_FNCTGDIPDI_					0	0	0			REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.744782	1093.47501	-0.81166	-0.00044458	7.9971	0.0043804	7.1854	0.0039358	547.7489867292603	35.794	0.44569	35.589	35.306	35.752	-0.20518	0.096816	0.00076038	NaN	30.318	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345230	+		17047	24079	11893	11917							-0.06798790287712109
FNCTGDIPDI	10	Unmodified	_FNCTGDIPDI_					0	0	0			REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	547.744782	1093.47501	-0.41312	-0.00022628	7.2661	0.00398	6.853	0.0037537	547.7486068505511	35.714	0.46906	35.501	35.115	35.584	-0.21246	0.0094817	-4.0441E-05	NaN	30.318	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232240	+		17048	24079	11893	11917							-0.06798790287712109
FNCTGDIPDI	10	Unmodified	_FNCTGDIPDI_					0	0	0			REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	REV__ENST00000588863.1_1_18:11999160-12009987:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	547.744782	1093.47501	-0.64606	-0.00035388	7.3669	0.0040352	6.7208	0.0036813	547.7486826219564	35.596	0.42078	35.41	35.1	35.521	-0.18675	-0.081973	7.0023E-05	NaN	30.318	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304580	+		17049	24079	11893	11917							-0.06798790287712109
FNDSQMLF	8	Unmodified	_FNDSQMLF_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2928466796875	2	501.223485	1000.43242	-0.13629	-6.831E-05	2.2704	0.001138	2.1341	0.0010697	501.22454954916503	45.565	0.23666	45.313	45.223	45.459	-0.25252					10	6	2	0	0	0	0.027866	1	4319	4319		83.287	14.802	1	76756	+		17050	25472	11894	11918	19093	19093					-0.06778140625249307
FNFQEFQY	8	Unmodified	_FNFQEFQY_					0	0	0		ENSG00000079931|ENST00000367963|MOXD1;nc|ENSG00000079931|Q6UVY6-2|MOXD1	ENSG00000079931|ENST00000367963|MOXD1	ENSG00000079931|ENST00000367963|MOXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.7816162109375	2	561.748182	1121.48181	-0.088759	-4.986E-05	-1.5217	-0.00085482	-1.6105	-0.00090468	561.7472331743952	46.783	0.32091	46.686	46.539	46.86	-0.096649					12	8	2	0	0	0	0.027866	1	4558	4558		31.955	12.851	1	148080			17051	1678	11895	11919	19094	19094					-0.07407109344785567
FNGADIDRAL	10	Unmodified	_FNGADIDRAL_					0	0	0			REV__ENSG00000081818|ENST00000194152|PCDHB4	REV__ENSG00000081818|ENST00000194152|PCDHB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.28125	2	546.277638	1090.54072	-0.15551	-8.4949E-05	2.8634	0.0015642	2.7078	0.0014792	546.2794964656591	17.475	0.26951	17.333	17.183	17.453	-0.14278					10	5	2	0	0	0	1.1333	1	164	164		28.081	0.19925	1	20222	+		17052	20684	11896	11920	19095	19095					-0.0009263305048534676
FNGKGLLEGL	10	Unmodified	_FNGKGLLEGL_					0	0	0			REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2966918945312	2	524.295299	1046.57605	-0.48822	-0.00025597	4.2426	0.0022244	3.7544	0.0019684	524.2974061099324	100.39	1.4136	100.39	99.871	101.28	0					101	34	5	0	0	0	0.55353	1	12853	12853		82.241	2.3013	1	3300600	+		17053	24769	11897	11921	19096	19096					0.05462029477325814
FNGKTYVF	8	Unmodified	_FNGKTYVF_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2530517578125	2	488.25036	974.486168	-0.59172	-0.00028891	2.6504	0.0012941	2.0587	0.0010052	488.25171356817253	29.212	3.9385	29.215	26.802	30.741	0.0031376					219	98	6	0	0	0	0.87148	1	1773	1773		53.351	6.585	1	6146300	+		17054	20666	11898	11922	19097	19097					-0.0020960013125659316
FNGRIGVFP	9	Unmodified	_FNGRIGVFP_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7790832519531	2	503.777077	1005.5396	-1.0672	-0.00053765	3.553	0.0017899	2.4857	0.0012523	503.778936625084	24.155	2.0576	24.108	23.321	25.379	-0.047148					139	47	5	0	0	0	0.78069	1	1001	1001		40.573	1.5511	1	642010			17055	5126	11899	11923	19098	19098					0.037051973712891595
FNHPITSSM	9	Unmodified	_FNHPITSSM_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.22119140625	2	517.242209	1032.46987	-0.96527	-0.00049928	-1.1762	-0.00060837	-2.1415	-0.0011076	517.7433225328155	36.044	0.60276	36.082	35.735	36.338	0.038044					18	16	2	0	0	0	0.024021	1	2773	2773		68.787	28.009	1	121290	+		17056	23780	11900	11924	19099	19099					-0.04507049359654047
FNILDKIVQ	9	Unmodified	_FNILDKIVQ_					0	0	0		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3170776367188	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.40693	1	11512	11512		65.465	8.7443	1	11705000			17057	5957	11901	11925	19100	19100					0.08222889028456848
FNIMGIVR	8	Unmodified	_FNIMGIVR_					0	0	0		ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.7513732910156	2	475.26803	948.521507	0.9397	0.00044661	-1.7143	-0.00081477	-0.77463	-0.00036816	475.26812694954856	20.44	0.19771	20.244	20.088	20.286	-0.19577					5	3	2	0	0	0	0.027866	1	538	538		26.796	15.285	1	6316.2			17058	6881	11902	11926	19101	19101					0.04518739124921467
FNITVTLYL	9	Unmodified	_FNITVTLYL_					0	0	0		nc|ENSG00000132874|Q15849-2|SLC14A2;ENSG00000132874|ENST00000255226|SLC14A2	nc|ENSG00000132874|Q15849-2|SLC14A2	nc|ENSG00000132874|Q15849-2|SLC14A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3077392578125	2	542.307875	1082.6012	-0.48299	-0.00026193	0.1159	6.2855E-05	-0.36709	-0.00019908	542.3075749151128	73.18	1.1422	72.909	72.435	73.577	-0.27126					70	28	4	0	0	0	0.42604	1	8901	8901		64.207	7.4862	1	1789200			17059	4660	11903	11927	19102	19102					0.06320084279900584
FNKISHLIN	9	Unmodified	_FNKISHLIN_					0	0	0		ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2900390625	2	543.308741	1084.60293	-1.3931	-0.00075687	3.9451	0.0021434	2.552	0.0013865	543.3110861322838	48.585	0.14079	48.309	48.222	48.362	-0.27598					5	3	2	0	0	0	0.024495	1	4810	4810		26.693	10.22	1	147320			17060	9550	11904	11928	19103	19103					0.06401138088540392
FNLDEELEI	9	Unmodified	_FNLDEELEI_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.829345703125	2	561.271687	1120.52882	-0.01315	-7.3808E-06	-2.7922	-0.0015672	-2.8053	-0.0015746	561.2700959766149	72.205	1.04	71.93	71.588	72.628	-0.27509					40	24	2	0	0	0	0.020356	1	8459	8459		104.06	41.949	1	325960			17061	2521	11905	11929	19104	19104					-0.02662294584342817
FNLDEELEI	9	Unmodified	_FNLDEELEI_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	561.271687	1120.52882	0.37776	0.00021202	-4.8994	-0.0027499	-4.5216	-0.0025379	561.2703205739167	72.383	0.18899	72.101	71.991	72.18	-0.28124	0.18578	-0.0023799	NaN	104.06	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32347			17062	2521	11905	11929							-0.02662294584342817
FNLEEIKKN	9	Unmodified	_FNLEEIKKN_					0	0	0		nc|ENSG00000026297|O00584-2|RNASET2	nc|ENSG00000026297|O00584-2|RNASET2	nc|ENSG00000026297|O00584-2|RNASET2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.81103515625	2	567.811313	1133.60807	-1.1634	-0.00066059	0.034612	1.9653E-05	-1.1288	-0.00064094	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.26413	1	8233	8233		80.455	6.1996	1	13770000			17063	18039	11906	11930	19105	19105					0.04661397160475644
FNLGFIKNI	9	Unmodified	_FNLGFIKNI_					0	0	0		nc|ENSG00000102383|Q96MV8-3|ZDHHC15;ENSG00000102383|ENST00000373367|ZDHHC15	nc|ENSG00000102383|Q96MV8-3|ZDHHC15	nc|ENSG00000102383|Q96MV8-3|ZDHHC15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7894287109375	2	533.30821	1064.60187	0.61857	0.00032989	-3.5592	-0.0018982	-2.9407	-0.0015683	533.3054736193156	64.134	0.6188	64.179	63.83	64.448	0.045502					29	16	3	0	0	0	0.024436	1	7445	7445		47.916	22.342	1	461600			17064	2406	11907	11931	19106	19106					0.07214923719629951
FNLLGSRLP	9	Unmodified	_FNLLGSRLP_					0	0	0			REV__KCNH2|p.S318F|1|0.18|ENSG00000055118|chr7:150957466-150957466|G/A|missense_variant	REV__KCNH2|p.S318F|1|0.18|ENSG00000055118|chr7:150957466-150957466|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.7953796386719	2	508.798009	1015.58147	0.11828	6.0178E-05	-3.9935	-0.0020319	-3.8752	-0.0019717	508.795892717671	102.66	0.5137	102.48	102.17	102.68	-0.17034					23	11	3	0	0	0	0.83071	1	12745	12745		37.159	5.6293	1	240760	+		17065	36169	11908	11932	19107	19107					0.07429753059807354
FNLLTWPR	8	Unmodified	_FNLLTWPR_					0	0	0			REV__ENST00000484865.1_1_21:45391291-45401085:+|nuORF	REV__ENST00000484865.1_1_21:45391291-45401085:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2982788085938	2	523.792727	1045.5709	0.10426	5.4611E-05	4.1027	0.0021489	4.2069	0.0022036	523.7951461086304	86.812	0.37507	86.833	86.634	87.01	0.021255					20	8	3	0	0	0	0.027866	1	10846	10846		60.972	2.19	1	2787200	+		17066	25296	11909	11933	19108	19108					0.04993770405349096
FNLQLKADL	9	Unmodified	_FNLQLKADL_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.8110961914062	2	531.303124	1060.5917	-0.058046	-3.084E-05	0.086905	4.6173E-05	0.028859	1.5333E-05	531.303055771019	61.569	0.34179	61.342	61.153	61.495	-0.22663					14	8	2	0	0	0	0.023817	1	7118	7118		51.335	8.9393	1	735690			17067	9475	11910	11934	19109	19109					0.06382315994369492
FNLQLKADL	9	Unmodified	_FNLQLKADL_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.303124	1060.5917	-0.22751	-0.00012088	0.15603	8.2901E-05	-0.071478	-3.7977E-05	531.3030835891271	61.343	0.3088	61.343	61.144	61.453	0	-0.0025083	7.747E-05	NaN	51.335	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656380			17068	9475	11910	11934							0.06382315994369492
FNLSSRLI	8	Unmodified	_FNLSSRLI_					0	0	0			REV__nc|ENSG00000100344|Q9NST1-2|PNPLA3	REV__nc|ENSG00000100344|Q9NST1-2|PNPLA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.26043701171875	2	475.276909	948.539266	-0.43981	-0.00020903	1.5822	0.00075201	1.1424	0.00054297	475.27740690550974	28.171	0.35608	28.019	27.847	28.203	-0.15195					14	8	2	0	0	0	0.027866	1	1605	1605		38.806	6.8513	1	288280	+		17069	21093	11911	11935	19110	19110					0.06293777651421806
FNLWPGVP	8	Unmodified	_FNLWPGVP_					0	0	0			REV__ENST00000393596.2_1_11:72929635-72945230:+|nuORF	REV__ENST00000393596.2_1_11:72929635-72945230:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.26470947265625	2	465.247621	928.480688	0.53459	0.00024872	-0.14735	-6.8553E-05	0.38724	0.00018016	465.2478547126037	58.115	0.21247	58.206	58.084	58.297	0.091217					10	5	2	0	0	0	0.027866	1	6500	6500		35.201	0	1	362530	+		17070	31650	11912	11936	19111	19111					0.013587210769401281
FNMCGFECRIL	11	Unmodified	_FNMCGFECRIL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.2249450683594	3	444.8681	1331.58247	-0.87826	-0.00039071	-4.3714	-0.0019447	-5.2497	-0.0023354	444.86589241922445	30.004	0.67354	29.826	29.57	30.243	-0.17818					39	15	4	0	0	0	0.024751	1	1911	1911		16.53	0	1	382920			17071	8454	11913	11937	19112	19112					-0.07005859949458682
FNNALPKQN	9	Unmodified	_FNNALPKQN_					0	0	0		nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.747802734375	2	523.274898	1044.53524	0.58792	0.00030764	3.7843	0.0019802	4.3722	0.0022878	523.7789613634161	74.677	0.2034	74.494	74.351	74.555	-0.18279					6	4	2	0	0	0	0.024523	1	8807	8807		15.642	0	1	30726			17072	8034	11914	11938	19113	19113					0.014756881576886371
FNNSVKGHR	9	Unmodified	_FNNSVKGHR_					0	0	0		ENST00000237858.10_1_5:95149949-95150081:-|nuORF	ENST00000237858.10_1_5:95149949-95150081:-|nuORF	ENST00000237858.10_1_5:95149949-95150081:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7796020507812	2	529.778139	1057.54173	0.34595	0.00018328	1.6681	0.00088374	2.0141	0.001067	529.7790256497054	63.692	1.8732	63.434	62.706	64.579	-0.25824					137	47	4	0	0	0	0.70156	1	7249	7249		45.972	8.1607	1	19432000			17073	11264	11915	11939	19114	19114					0.015256261091053602
FNPQNSIIL	9	Unmodified	_FNPQNSIIL_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.802490234375	2	523.287474	1044.5604	0.4631	0.00024233	3.6386	0.001904	4.1017	0.0021464	523.7924649524912	96.772	0.44485	96.635	96.435	96.88	-0.1367					11	9	2	0	0	0	0.024261	1	11977	11977		74.255	18.751	1	43076			17074	10401	11916	11940	19115	19115					0.039897429602888224
FNPVLYPKA	9	Unmodified	_FNPVLYPKA_					0	0	0		nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	nc|ENSG00000132359|Q684P5-3|RAP1GAP2	nc|ENSG00000132359|Q684P5-3|RAP1GAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2843627929688	2	524.794935	1047.57532	-0.38354	-0.00020128	1.689	0.00088638	1.3055	0.0006851	525.2974100588053	55.801	1.4061	55.801	54.908	56.314	0					64	39	3	0	0	0	0.024506	1	6131	6131		23.042	0	1	1341000			17075	4596	11917	11941	19116	19116					0.05343234828296772
FNPYLGPVS	9	Unmodified	_FNPYLGPVS_					0	0	0		nc|ENSG00000152601|Q9NR56-2|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;ENSG00000152601|ENST00000324210|MBNL1	nc|ENSG00000152601|Q9NR56-2|MBNL1	nc|ENSG00000152601|Q9NR56-2|MBNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.8214111328125	2	497.255643	992.496732	-0.080577	-4.0068E-05	-3.9658	-0.001972	-4.0463	-0.0020121	497.253497115015	42.521	0.49146	42.388	42.183	42.674	-0.1322					25	13	3	0	0	0	0.024506	1	3893	3893		16.473	0	1	291280			17076	18388	11918	11942	19117	19117					0.00018382523194304667
FNQSMKGEY	9	Unmodified	_FNQSMKGEY_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.7821655273438	2	552.244949	1102.47534	-0.20678	-0.00011419	-0.58782	-0.00032462	-0.7946	-0.00043881	552.2445793411373	45.996	0.70969	45.735	45.181	45.891	-0.26118					30	19	2	0	0	0	0.024025	1	4296	4296		62.107	0	1	210540	+		17077	22942	11919	11943	19118	19118					-0.07179370567814658
FNQSVPRLTYL	11	Unmodified	_FNQSVPRLTYL_					0	0	0			REV__nc|ENSG00000151893|Q86Y37-2|CACUL1	REV__nc|ENSG00000151893|Q86Y37-2|CACUL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.2395935058594	3	446.578588	1336.71394	-0.31006	-0.00013847	0.072652	3.2445E-05	-0.23741	-0.00010602	446.5785792714365	54.734	0.62881	54.588	54.245	54.873	-0.14609					26	16	2	0	0	0	0.024757	1	5788	5788		35.178	17.345	1	291730	+		17078	36785	11920	11944	19119	19119					0.059047330059456726
FNQVKDQQTN	10	Unmodified	_FNQVKDQQTN_					0	0	0			REV__ENST00000577961.5_1_18:732902-736828:-|nuORF	REV__ENST00000577961.5_1_18:732902-736828:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	610.315673828125	2	611.296559	1220.57856	-0.70475	-0.00043081	0.98163	0.00060007	0.27689	0.00016926	611.2969002810771	61.296	0.83585	61.296	60.884	61.72	0					45	21	3	0	0	0	0.03519	1	7103	7103		80.455	3.137	1	127090	+		17079	35484	11921	11945	19120	19120					-0.022901668556414734
FNRHIYGL	8	Unmodified	_FNRHIYGL_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.8084716796875	2	510.274701	1018.53485	-0.16959	-8.6539E-05	2.4176	0.0012336	2.248	0.0011471	510.2756114493055	68.159	0.87599	68.159	67.644	68.52	0					35	22	3	0	0	0	0.027866	1	8198	8198		28.254	0	1	276230	+		17080	23584	11922	11946	19121	19121					0.02632313228525618
FNRQPEWVV	9	Unmodified	_FNRQPEWVV_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.8077392578125	2	587.803823	1173.59309	-0.6635	-0.00039001	0.78861	0.00046355	0.12511	7.354E-05	587.8040191785149	76.204	0.44221	75.932	75.849	76.291	-0.27266					14	10	2	0	0	0	0.024541	1	9023	9023		29.15	7.1897	1	281090			17081	1365	11923	11947	19122	19122					0.013239500831332407
FNRRFKNN	8	Unmodified	_FNRRFKNN_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3235473632812	2	548.293956	1094.57336	0.034879	1.9124E-05	1.3948	0.00076479	1.4297	0.00078391	548.2942982027557	75.192	0.33827	75.017	74.774	75.113	-0.17548					12	7	2	0	0	0	0.027866	1	8846	8846		38.806	0	1	114250	+		17082	25513	11924	11948	19123	19123					0.029856188630446923
FNRVNQTSI	9	Unmodified	_FNRVNQTSI_					0	0	0			REV__ENSG00000052795|ENST00000264433|FNIP2	REV__ENSG00000052795|ENST00000264433|FNIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2642822265625	2	539.78563	1077.55671	-0.96864	-0.00052286	-1.3249	-0.00071515	-2.2935	-0.001238	540.2869766658577	69.753	0.53725	69.531	69.185	69.722	-0.22245					18	12	2	0	0	0	0.024292	1	8060	8060		32.812	0	1	77960	+		17083	20174	11925	11949	19124	19124					0.02103073186435722
FNSKEALLL	9	Unmodified	_FNSKEALLL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.746337890625	2	517.797675	1033.5808	-0.64506	-0.00033401	-1.3833	-0.00071629	-2.0284	-0.0010503	517.7964284865334	48.242	0.59051	47.966	47.701	48.292	-0.27598					22	15	3	0	0	0	0.024523	1	4728	4728		29.15	16.943	1	211570			17084	349	11926	11950	19125	19125					0.06534913620112093
FNSKSRLSKS	10	Unmodified	_FNSKSRLSKS_					0	0	0			REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2981567382812	2	577.319837	1152.62512	-1.7158	-0.00099057	-3.4079	-0.0019674	-5.1237	-0.002958	577.3165692583613	92.53	0.48493	92.386	92.127	92.612	-0.14356					17	11	2	0	0	0	0.03519	1	11383	11383		30.318	17.506	1	59712	+		17085	30421	11927	11951	19126	19126					0.054913177662683665
FNSLEVMEV	9	Unmodified	_FNSLEVMEV_					0	0	0		nc|ENSG00000152402|P33402-3|GUCY1A2	nc|ENSG00000152402|P33402-3|GUCY1A2	nc|ENSG00000152402|P33402-3|GUCY1A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2802124023438	2	534.257525	1066.5005	-0.045842	-2.4491E-05	-2.7398	-0.0014638	-2.7856	-0.0014883	534.255272963959	54.304	0.21602	54.106	53.99	54.206	-0.19739					9	5	2	0	0	0	0.024389	1	5743	5743		51.193	15.574	1	111970			17086	18386	11928	11952	19127	19127					-0.0300931576525727
FNSRGRREL	9	Unmodified	_FNSRGRREL_					0	0	0			REV__nc|ENSG00000073150|Q96RD6-2|PANX2	REV__nc|ENSG00000073150|Q96RD6-2|PANX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.8099975585938	2	567.809971	1133.60539	-0.73961	-0.00041996	2.0372	0.0011568	1.2976	0.0007368	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.2508	1	8345	8345		82.241	7.9855	1	14091000	+		17087	20495	11929	11953	19128	19128					0.04392986546190514
FNTKTKDGFT	10	Unmodified	_FNTKTKDGFT_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	580.2593994140625	2	579.793121	1157.57169	-0.14773	-8.5654E-05	0.19963	0.00011575	0.051899	3.0091E-05	579.7931994479821	42.718	0.46218	42.606	42.353	42.815	-0.11253					19	11	2	0	0	0	0.03519	1	3847	3847		23.523	0	1	271500			17088	5677	11930	11954	19129	19129					-0.0007947973626869498
FNVLYPMPA	9	Unmodified	_FNVLYPMPA_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.3147583007812	2	526.267696	1050.52084	0.050497	2.6575E-05	2.2265	0.0011717	2.277	0.0011983	526.2687389275756	78.262	1.0237	78.106	77.49	78.514	-0.15591					34	23	3	0	0	0	0.024517	1	9261	9261		26.796	0	1	409060			17089	3047	11931	11955	19130	19130					-0.002401003147724623
FNVLYPMPA	9	Unmodified	_FNVLYPMPA_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	526.267696	1050.52084	-0.89611	-0.00047159	3.4394	0.00181	2.5432	0.0013384	526.2693473542059	78.176	0.78221	78.176	77.876	78.658	0	0.039864	0.00080456	NaN	26.796	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1811100			17090	3047	11931	11955							-0.002401003147724623
FNVLYPMPA	9	Unmodified	_FNVLYPMPA_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.267696	1050.52084	-0.39289	-0.00020677	2.8014	0.0014743	2.4085	0.0012675	526.2690806681229	78.308	0.51553	78.053	77.912	78.427	-0.25471	-0.083241	0.0001331	NaN	26.796	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181400			17091	3047	11931	11955							-0.002401003147724623
FNVLYPMPA	9	Unmodified	_FNVLYPMPA_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.267696	1050.52084	0.24968	0.0001314	2.0731	0.001091	2.3228	0.0012224	526.2688105239401	78.344	0.64269	78.112	77.834	78.476	-0.23141	-0.023932	-0.0006335	NaN	26.796	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358250			17092	3047	11931	11955							-0.002401003147724623
FNVSCLCVSI	10	Carbamidomethyl (C)	_FNVSC(Carbamidomethyl (C))LCVSI_	FNVSC(0.5)LC(0.5)VSI		FNVSC(0)LC(0)VSI		0	1	0		ENST00000296632.7_1_5:110834693-110834765:-|nuORF	ENST00000296632.7_1_5:110834693-110834765:-|nuORF	ENST00000296632.7_1_5:110834693-110834765:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.2720947265625	2	571.272652	1140.53075	0.29083	0.00016614	-0.097089	-5.5465E-05	0.19374	0.00011068	571.2723780562972	86.154	0.8266	86.016	85.66	86.487	-0.13734					36	18	3	0	0	0	1.0236	1	10444	10444		42.864	6.4175	2	516080			17093	11845	11932	11956	19131	19131	162;163				-0.03389280371720815
FNYIESVPL	9	Unmodified	_FNYIESVPL_					0	0	0			REV__ENSG00000109101|ENST00000579795|FOXN1	REV__ENSG00000109101|ENST00000579795|FOXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.282470703125	2	541.281857	1080.54916	-0.93534	-0.00050628	0.69372	0.0003755	-0.24163	-0.00013079	541.2821119204453	80.325	0.86641	80.325	79.994	80.861	0					48	20	4	0	0	0	0.40179	1	10002	10002		65.803	2.4969	1	1589000	+		17094	21781	11933	11957	19132	19132					0.012109208661513549
FNYIESVPL	9	Unmodified	_FNYIESVPL_					0	0	0			REV__ENSG00000109101|ENST00000579795|FOXN1	REV__ENSG00000109101|ENST00000579795|FOXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2817993164062	2	541.281857	1080.54916	-1.546	-0.00083683	0.69733	0.00037745	-0.84868	-0.00045938	541.2824909172688	80.506	0.78489	80.355	80.091	80.876	-0.15168					43	18	4	0	0	0	0.43973	1	9990	9990		63.306	6.5852	1	1527700	+		17095	21781	11933	11957	19133	19133					0.012109208661513549
FNYIESVPL	9	Unmodified	_FNYIESVPL_					0	0	0			REV__ENSG00000109101|ENST00000579795|FOXN1	REV__ENSG00000109101|ENST00000579795|FOXN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	541.281857	1080.54916	-1.4205	-0.00076891	0.68392	0.00037019	-0.73662	-0.00039872	541.2824422326003	80.351	0.74845	80.372	80.063	80.811	0.021439	0.084129	-4.5034E-05	NaN	65.803	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1628200	+		17096	21781	11933	11957							0.012109208661513549
FNYIESVPL	9	Unmodified	_FNYIESVPL_					0	0	0			REV__ENSG00000109101|ENST00000579795|FOXN1	REV__ENSG00000109101|ENST00000579795|FOXN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.281857	1080.54916	0.0027819	1.5058E-06	0.20148	0.00010905	0.20426	0.00011056	541.2815560729148	80.432	0.49775	80.226	80.01	80.508	-0.20632	-0.062078	-0.00056731	NaN	65.803	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282460	+		17097	21781	11933	11957							0.012109208661513549
FNYIESVPL	9	Unmodified	_FNYIESVPL_					0	0	0			REV__ENSG00000109101|ENST00000579795|FOXN1	REV__ENSG00000109101|ENST00000579795|FOXN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.281857	1080.54916	-0.82526	-0.0004467	1.1471	0.00062092	0.32188	0.00017423	541.2821389942121	80.309	0.53719	80.163	79.995	80.532	-0.146	-0.12566	0.00045643	NaN	65.803	22	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223950	+		17098	21781	11933	11957							0.012109208661513549
FNYLTRIR	8	Unmodified	_FNYLTRIR_					0	0	0		ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.8098754882812	2	541.808908	1081.60326	-0.86817	-0.00047038	-1.7105	-0.00092678	-2.5787	-0.0013972	541.8078509174667	28.999	1.359	29.079	28.329	29.688	0.080542					89	33	4	0	0	0	0.89627	1	1676	1676		51.335	1.3019	1	2123000			17099	6035	11934	11958	19134	19134					0.06572557808340207
FPAEEKTQL	9	Unmodified	_FPAEEKTQL_					0	0	0		ENST00000539580.5_1_12:108957892-108961477:+|nuORF	ENST00000539580.5_1_12:108957892-108961477:+|nuORF	ENST00000539580.5_1_12:108957892-108961477:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7763061523438	2	531.776939	1061.53933	-0.90058	-0.00047891	-1.0662	-0.000567	-1.9668	-0.0010459	531.777288887594	82.858	0.98608	82.858	82.237	83.223	0					96	22	7	0	0	0	0.039744	2	10372	10358;10372		133.81	23.693	1	3301700			17100	16404	11935	11959	19135;19136	19136					0.011017328607522359
FPAEEKTQL	9	Unmodified	_FPAEEKTQL_					0	0	0		ENST00000539580.5_1_12:108957892-108961477:+|nuORF	ENST00000539580.5_1_12:108957892-108961477:+|nuORF	ENST00000539580.5_1_12:108957892-108961477:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7761840820312	2	531.776939	1061.53933	-0.78411	-0.00041697	0.1393	7.4075E-05	-0.64481	-0.0003429	531.777215766453	82.788	1.237	82.814	82.19	83.427	0.02655					80	28	5	0	0	0	0.027092	2	10277	10252;10277		143.89	12.855	1	3936900			17101	16404	11935	11959	19137;19138	19138					0.011017328607522359
FPAEKHFQEW	10	Unmodified	_FPAEKHFQEW_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.2100830078125	3	440.212017	1317.61422	0.69537	0.00030611	-3.8089	-0.0016767	-3.1135	-0.0013706	440.21023950283376	50.551	1.3597	50.37	50.055	51.415	-0.18071					67	35	4	0	0	0	0.93809	1	5137	5137		51.528	1.4942	1	3245400	+		17102	19690	11936	11960	19139	19139					-0.03188084607995734
FPAFPFDL	8	Unmodified	_FPAFPFDL_					0	0	0		ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.77691650390625	2	477.242004	952.469455	0.41982	0.00020036	-0.90837	-0.00043351	-0.48855	-0.00023316	477.24138031380465	68.516	0.81915	68.535	68.198	69.017	0.018913					45	21	3	0	0	0	0.027866	1	8162	8162		44.531	3.7529	1	1658800			17103	11576	11937	11961	19140	19140					-0.00868101017204026
FPAHSSRA	8	Unmodified	_FPAHSSRA_					0	0	0		ENST00000252674.8_2_19:6211645-6212743:-|nuORF	ENST00000252674.8_2_19:6211645-6212743:-|nuORF	ENST00000252674.8_2_19:6211645-6212743:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.5291748046875	2	436.722301	871.43005	0.06897	3.0121E-05	3.9207	0.0017122	3.9896	0.0017424	436.7245865728395	32.084	0.17173	31.926	31.819	31.991	-0.15772					5	3	2	0	0	0	0.027866	1	2155	2155		3.6843	0	1	14732			17104	11359	11938	11962	19141	19141					-0.01080808248059384
FPALILLP	8	Unmodified	_FPALILLP_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2591857910156	2	442.286214	882.557876	-0.90065	-0.00039834	-3.2599	-0.0014418	-4.1606	-0.0018402	442.2834375620896	27.148	0.2887	27.23	27.031	27.319	0.081293					9	7	2	0	0	0	0.027866	1	1396	1396		24.504	0	1	60106	+		17105	28082	11939	11963	19142	19142					0.11189939293285533
FPAMGLKMA	9	Unmodified	_FPAMGLKMA_					0	0	0			REV__ENSG00000198763|ENST00000361453|MT-ND2	REV__ENSG00000198763|ENST00000361453|MT-ND2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.3109436035156	2	483.250991	964.48743	-0.29769	-0.00014386	-4.2998	-0.0020779	-4.5975	-0.0022218	483.24882193514827	67.326	0.55832	67.038	66.749	67.307	-0.28834					21	13	2	0	0	0	0.024386	1	8030	8030		33.516	0	1	106670	+		17106	28469	11940	11964	19143	19143					0.0037657464165476995
FPASSGVMEKL	11	Unmodified	_FPASSGVMEKL_					0	0	0		ENSG00000144962|ENST00000351008|SPATA16;NCEH1-SPATA16|1|fusion;NCEH1-SPATA16|2|fusion	ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.2723388671875	2	583.299724	1164.5849	-0.34285	-0.00019999	1.0893	0.00063539	0.74645	0.0004354	583.8009555626271	89.49	0.60125	89.352	89.148	89.749	-0.13762					40	13	5	0	0	0	0.024745	1	10905	10905		49.536	28.589	1	115300			17107	5786	11941	11965	19144	19144					0.009186350515165032
FPAVMDDTV	9	Unmodified	_FPAVMDDTV_					0	0	0			REV__ENSG00000179477|ENST00000647874|ALOX12B	REV__ENSG00000179477|ENST00000647874|ALOX12B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7874755859375	2	497.731143	993.447733	0.31926	0.0001589	2.9875	0.001487	3.3067	0.0016459	497.73238223998874	57.499	0.83689	57.325	56.734	57.571	-0.1749					31	22	2	0	0	0	0.024457	1	6365	6365		45.952	5.3793	1	114310	+		17108	27272	11942	11966	19145	19145					-0.049252738280642916
FPAVSLVVCP	10	Unmodified	_FPAVSLVVCP_					0	0	0		ENST00000280481.8_1_13:39261339-39261684:+|nuORF	ENST00000280481.8_1_13:39261339-39261684:+|nuORF	ENST00000280481.8_1_13:39261339-39261684:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2843627929688	2	516.283346	1030.55214	-0.53282	-0.00027509	-2.406	-0.0012422	-2.9388	-0.0015173	516.7846162505531	82.664	0.64556	82.664	82.492	83.138	0					27	14	3	0	0	0	0.03519	1	10300	10300		47.916	7.1374	1	124090			17109	11714	11943	11967	19146	19146					0.03808472719310885
FPAVVELVNL	10	Unmodified	_FPAVVELVNL_					0	0	0			REV__ENST00000464236.1_1_1:70728472-70740491:-|nuORF	REV__ENST00000464236.1_1_1:70728472-70740491:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8204956054688	2	550.82115	1099.62775	0.17607	9.6981E-05	-0.62077	-0.00034193	-0.44471	-0.00024495	550.8207980834624	101.79	1.9465	101.66	100.81	102.76	-0.12666					103	46	4	0	0	0	0.45367	1	12642	12642		93.195	2.5946	1	1137200	+		17110	22405	11944	11968	19147	19147					0.08191773171233763
FPAWAIVIV	9	Unmodified	_FPAWAIVIV_					0	0	0		ENSG00000168631|ENST00000462446|MUCL3;nc|ENSG00000168631|Q3MIW9|MUCL3;nc|ENSG00000168631|Q3MIW9-2|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3020935058594	2	508.302396	1014.59024	-0.034944	-1.7762E-05	-0.81026	-0.00041186	-0.84521	-0.00042962	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.48384	1	6218	6218		60.404	1.6217	1	8817200			17111	7848	11945	11969	19148	19148					0.08352726696273294
FPAWAIVIV	9	Unmodified	_FPAWAIVIV_					0	0	0		ENSG00000168631|ENST00000462446|MUCL3;nc|ENSG00000168631|Q3MIW9|MUCL3;nc|ENSG00000168631|Q3MIW9-2|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3021240234375	2	508.302396	1014.59024	-0.35052	-0.00017817	-0.45055	-0.00022902	-0.80107	-0.00040719	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.65391	1	6206	6206		49.211	5.094	1	8370900			17112	7848	11945	11969	19149	19149					0.08352726696273294
FPAWAIVIV	9	Unmodified	_FPAWAIVIV_					0	0	0		ENSG00000168631|ENST00000462446|MUCL3;nc|ENSG00000168631|Q3MIW9|MUCL3;nc|ENSG00000168631|Q3MIW9-2|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.3021240234375	2	508.302396	1014.59024	-0.88652	-0.00045062	0.015191	7.7215E-06	-0.87133	-0.0004429	508.3023500786697	55.676	1.7745	55.774	54.66	56.435	0.098015					108	39	3	0	0	0	0.48384	1	6118	6118		60.404	9.2109	1	9000800			17113	7848	11945	11969	19150	19150					0.08352726696273294
FPCDLIFL	8	Unmodified	_FPCDLIFL_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.25335693359375	2	484.251514	966.488476	0.17734	8.5876E-05	3.632	0.0017588	3.8094	0.0018447	484.25323939594875	52.454	1.5806	52.306	51.985	53.566	-0.14723					85	41	4	0	0	0	0.48546	1	5599	5599		86.935	8.9908	1	9733500			17114	1386	11946	11970	19151	19151					0.0038911228219831173
FPCHPCRYPK	10	Unmodified	_FPCHPCRYPK_					0	0	0			REV__nc|ENSG00000163795|Q8N8E2-2|ZNF513	REV__nc|ENSG00000163795|Q8N8E2-2|ZNF513	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.5339660644531	3	416.531928	1246.57395	0.97204	0.00040489	2.9665	0.0012356	3.9385	0.0016405	416.53331240501666	19.877	0.38843	19.677	19.554	19.943	-0.2001					9	7	2	0	0	0	0.03519	1	477	477		21.686	12.503	1	47074	+		17115	25633	11947	11971	19152	19152					-0.03947045803806759
FPCIKWVT	8	Unmodified	_FPCIKWVT_					0	0	0			REV__nc|ENSG00000103546|P23975-2|SLC6A2	REV__nc|ENSG00000103546|P23975-2|SLC6A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.3001403808594	2	497.264956	992.515359	-0.69903	-0.0003476	2.6822	0.0013338	1.9832	0.00098615	497.2661782486698	64.505	0.50439	64.249	64.038	64.542	-0.25563					27	12	3	0	0	0	0.027866	1	7357	7357		18.324	0	1	482240	+		17116	21396	11948	11972	19153	19153					0.018802208933834663
FPCSHRFS	8	Unmodified	_FPCSHRFS_					0	0	0		ENST00000319595.5_1_3:88040084-88040186:+|nuORF	ENST00000319595.5_1_3:88040084-88040186:+|nuORF	ENST00000319595.5_1_3:88040084-88040186:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.27923583984375	2	490.723987	979.433421	0.20701	0.00010158	3.6397	0.0017861	3.8467	0.0018877	490.7255493774734	60.037	0.76399	59.861	59.516	60.28	-0.1761					39	19	3	0	0	0	0.027866	1	6614	6614		33.516	16.151	1	825610			17117	12185	11949	11973	19154	19154					-0.05711881465697388
FPDFGLLLYL	10	Unmodified	_FPDFGLLLYL_					0	0	0		ENSG00000158077|ENST00000299481|NLRP14;NLRP14|p.M350*|1|0.37|ENSG00000158077|chr11:7043072-7043072|C/-|frameshift_variant	ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	598.849853515625	2	599.33135	1196.64815	0.4209	0.00025226	-3.2845	-0.0019685	-2.8636	-0.0017162	599.3293657381836	96.965	0.58048	96.841	96.572	97.152	-0.12368					28	12	3	0	0	0	0.03519	1	11974	11974		44.117	18.543	1	215740			17118	6643	11950	11974	19155	19155					0.05768943831071738
FPDGTHND	8	Unmodified	_FPDGTHND_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2301025390625	2	451.685581	901.35661	-0.14469	-6.5352E-05	-3.197	-0.001444	-3.3417	-0.0015094	451.68393461797393	26.242	0.46149	26.324	26.21	26.671	0.081293					17	10	2	0	0	0	0.027866	1	1256	1256		15.642	3.435	1	52310			17119	5370	11951	11975	19156	19156					-0.09801401481195171
FPDNQRPAL	9	Unmodified	_FPDNQRPAL_					0	0	0		ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-2|ETV4;nc|ENSG00000175832|P43268-3|ETV4	ENSG00000175832|ENST00000319349|ETV4	ENSG00000175832|ENST00000319349|ETV4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2736206054688	2	529.274898	1056.53524	-0.63937	-0.0003384	0.077668	4.1107E-05	-0.56171	-0.0002973	529.2748958080829	46.567	2.9033	46.567	45.613	48.516	0					219	83	4	0	0	0	0.014988	19	4539	4528;4539;4550;4562;4575;4587;4599;4611;4623;4634;4645;4657;4669;4684;4696;4707;4721;4731;4751		161.9	54.847	1	9390200			17120	8591	11952	11976	19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172;19173;19174;19175	19158					0.009236881576953238
FPDNQRPAL	9	Unmodified	_FPDNQRPAL_					0	0	0		ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-2|ETV4;nc|ENSG00000175832|P43268-3|ETV4	ENSG00000175832|ENST00000319349|ETV4	ENSG00000175832|ENST00000319349|ETV4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2747192382812	2	529.274898	1056.53524	-0.75829	-0.00040135	0.23427	0.000124	-0.52402	-0.00027735	529.2749701105803	46.58	3.1384	46.427	45.543	48.681	-0.15301					241	89	4	0	0	0	0.014988	20	4557	4523;4533;4544;4557;4570;4581;4594;4606;4617;4628;4640;4651;4663;4675;4688;4701;4713;4726;4736;4751		161.9	53.152	1	8932300			17121	8591	11952	11976	19176;19177;19178;19179;19180;19181;19182;19183;19184;19185;19186;19187;19188;19189;19190;19191;19192;19193;19194;19195	19179					0.009236881576953238
FPDNQRPAL	9	Unmodified	_FPDNQRPAL_					0	0	0		ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-2|ETV4;nc|ENSG00000175832|P43268-3|ETV4	ENSG00000175832|ENST00000319349|ETV4	ENSG00000175832|ENST00000319349|ETV4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.274658203125	2	529.274898	1056.53524	-0.35381	-0.00018726	-0.039512	-2.0913E-05	-0.39332	-0.00020817	529.2747384941929	46.483	2.9517	46.535	45.621	48.573	0.051395					291	84	6	0	0	0	0.013333	20	4507	4448;4459;4470;4481;4493;4507;4519;4530;4542;4554;4564;4576;4588;4600;4613;4625;4638;4652;4661;4682		176.41	72.354	1	10032000			17122	8591	11952	11976	19196;19197;19198;19199;19200;19201;19202;19203;19204;19205;19206;19207;19208;19209;19210;19211;19212;19213;19214;19215	19201					0.009236881576953238
FPDNQRPFL	9	Unmodified	_FPDNQRPFL_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.2901000976562	2	567.290548	1132.56654	0.19654	0.0001115	-0.4685	-0.00026578	-0.27196	-0.00015428	567.2901364862425	59.115	3.0206	59.115	58.159	61.18	0					239	81	4	0	0	0	0.012289	15	6683	6665;6683;6693;6706;6718;6731;6748;6761;6773;6785;6796;6806;6820;6874;6886		227.71	114.3	1	6040100			17123	18765	11953	11977	19216;19217;19218;19219;19220;19221;19222;19223;19224;19225;19226;19227;19228;19229;19230	19217					0.005562611917866889
FPDNQRPFL	9	Unmodified	_FPDNQRPFL_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.291015625	2	567.290548	1132.56654	0.73017	0.00041422	-0.9684	-0.00054936	-0.23823	-0.00013515	567.2898686648737	59.303	3.2033	59.108	58.165	61.368	-0.19473					229	86	4	0	0	0	0.013333	14	6704	6680;6691;6704;6721;6733;6752;6764;6774;6787;6800;6810;6822;6883;6896		207.6	94.192	1	5906000			17124	18765	11953	11977	19231;19232;19233;19234;19235;19236;19237;19238;19239;19240;19241;19242;19243;19244	19233					0.005562611917866889
FPDNQRPFL	9	Unmodified	_FPDNQRPFL_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.2902221679688	2	567.290548	1132.56654	-0.6663	-0.00037798	0.18477	0.00010482	-0.48153	-0.00027317	567.2906546288041	58.937	2.9942	59.023	58.079	61.073	0.085682					255	80	5	0	0	0	0.013333	16	6592	6557;6582;6592;6605;6618;6629;6641;6653;6664;6675;6690;6701;6711;6723;6737;6791		211.39	112.76	1	5513700			17125	18765	11953	11977	19245;19246;19247;19248;19249;19250;19251;19252;19253;19254;19255;19256;19257;19258;19259;19260	19247					0.005562611917866889
FPDVIISCW	9	Unmodified	_FPDVIISCW_					0	0	0			REV__ENSG00000188554|ENST00000590996|NBR1	REV__ENSG00000188554|ENST00000590996|NBR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7890625	2	540.265153	1078.51575	-0.43879	-0.00023706	4.2429	0.0022923	3.8041	0.0020552	540.7699276711339	59.131	1.5814	58.943	58.266	59.847	-0.18795					91	39	5	0	0	0	0.024466	1	6565	6565		42.474	13.325	1	1127000	+		17126	28044	11954	11978	19261	19261					-0.02036404177397344
FPDVIISCW	9	Unmodified	_FPDVIISCW_					0	0	0			REV__ENSG00000188554|ENST00000590996|NBR1	REV__ENSG00000188554|ENST00000590996|NBR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.265153	1078.51575	0.028396	1.5341E-05	3.4035	0.0018388	3.4319	0.0018541	540.769317235772	59.009	1.5544	58.828	58.145	59.699	-0.18134	-0.057823	-0.00049172	NaN	42.474	79	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1082500	+		17127	28044	11954	11978							-0.02036404177397344
FPEFLKELAAL	11	Unmodified	_FPEFLKELAAL_					0	0	0		ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	639.3638305664062	2	639.360639	1276.70673	1.0523	0.00067282	3.0073	0.0019227	4.0596	0.0025956	639.3623736955627	109.93	0.4075	109.92	109.75	110.16	-0.009491					54	18	4	0	0	0	1.0521	1	13911	13911		24.519	0	1	3628300			17128	7224	11955	11979	19262	19262					0.07944000405541374
FPELVLPVV	9	Unmodified	_FPELVLPVV_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.31951904296875	2	506.807511	1011.60047	-0.38562	-0.00019544	-3.6066	-0.0018278	-3.9922	-0.0020233	506.8054532860039	53.184	0.64947	53.279	52.943	53.592	0.095669					34	17	3	0	0	0	0.024325	1	5634	5634		50.025	4.0523	1	799720			17129	9769	11956	11980	19263	19263					0.09513289630842792
FPEQEEDEL	9	Unmodified	_FPEQEEDEL_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.29|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant;ENST00000494125.1_1_7:150759074-150761528:+|nuORF	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.8121337890625	2	568.243126	1134.4717	-0.69409	-0.00039441	1.5398	0.000875	0.84574	0.00048059	568.24419920169	71.246	0.57176	71.256	70.937	71.509	0.010735					20	14	2	0	0	0	0.024323	1	8544	8544		44.117	8.4985	1	199750			17130	7335	11957	11981	19264	19264					-0.09015761860700877
FPESWSVPRL	10	Unmodified	_FPESWSVPRL_					0	0	0		ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.5475769042969	3	406.548629	1216.62406	0.90701	0.00036874	-3.8433	-0.0015625	-2.9363	-0.0011938	406.54699082672477	40.407	0.70171	40.43	40.162	40.864	0.023006					60	19	4	0	0	0	1.0236	1	3494	3494		42.864	7.686	1	2858400			17131	9161;16829	11958	11982	19265	19265					0.02441103397381994
FPFFVVRVI	9	Unmodified	_FPFFVVRVI_					0	0	0			REV__nc|ENSG00000006576|Q8N3S3-4|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2977905273438	2	562.33677	1122.65899	0.48226	0.00027119	-1.6375	-0.00092085	-1.1553	-0.00064965	562.3358408849364	58.603	0.32853	58.361	58.173	58.502	-0.24165					11	7	2	0	0	0	0.024412	1	6423	6423		17.365	0	1	134250	+		17132	19834	11959	11983	19266	19266					0.10256390996005393
FPFGLALVR	9	Unmodified	_FPFGLALVR_					0	0	0			REV__ENSG00000204315|ENST00000375156|FKBPL	REV__ENSG00000204315|ENST00000375156|FKBPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.30511474609375	2	510.30547	1018.59639	1.843	0.0009405	-2.5811	-0.0013172	-0.73811	-0.00037666	510.3040118032133	19.087	2.5157	18.853	18.533	21.048	-0.23345					85	50	3	0	0	0	0.52323	1	371	371		57.811	3.035	1	695710	+		17133	28591	11960	11984	19267	19267					0.08783244927803935
FPFHAVQIEPQ	11	Unmodified	_FPFHAVQIEPQ_					0	0	0			REV__nc|ENSG00000167711|P08697-2|SERPINF2	REV__nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.7524108886719	3	438.227667	1311.66117	-6.8036E-05	-2.9815E-08	3.1258	0.0013698	3.1257	0.0013698	438.2289449528728	39.961	0.30682	39.73	39.623	39.93	-0.23021					9	7	2	0	0	0	0.024734	1	3430	3430		27.644	12.311	1	113540	+	+	17134	26185	11961	11985	19268	19268					0.01780774943108554
FPFLEQLQL	9	Unmodified	_FPFLEQLQL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.8109130859375	2	567.813325	1133.6121	-0.73961	-0.00041996	-3.8697	-0.0021973	-4.6093	-0.0026172	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.17822	1	8333	8333		93.195	13.483	1	14091000			17135	9637	11962	11986	19269	19269					0.050634866541713563
FPFLEQLQL	9	Unmodified	_FPFLEQLQL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.8106689453125	2	567.813325	1133.6121	-1.1634	-0.00066059	-3.5077	-0.0019917	-4.6711	-0.0026523	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.17822	2	8268	8268;8287		93.195	13.483	1	13770000			17136	9637	11962	11986	19270;19271	19270					0.050634866541713563
FPFLIFLVT	9	Unmodified	_FPFLIFLVT_					0	0	0			REV__ENSG00000170782|ENST00000379829|OR10A4	REV__ENSG00000170782|ENST00000379829|OR10A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.2754516601562	2	548.825704	1095.63685	-0.27722	-0.00015214	-2.1542	-0.0011823	-2.4314	-0.0013344	548.8240554391668	46.856	0.70094	46.856	46.48	47.181	0					59	18	6	0	0	0	0.024443	1	4641	4641		44.531	2.0566	1	1788900	+		17137	26503	11963	11987	19272	19272					0.0928616652756773
FPFLLYMVL	9	Unmodified	_FPFLLYMVL_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.296630859375	2	571.819564	1141.62458	-1.089	-0.00062272	-2.592	-0.0014822	-3.681	-0.0021049	571.8178902746288	65.178	0.96918	65.178	64.944	65.913	0					54	26	3	0	0	0	0.024475	1	7694	7694		29.842	0	1	1240000			17138	9960	11964	11988	19273	19273					0.05942806792859301
FPFVLHRRLIR	11	Unmodified	_FPFVLHRRLIR_					0	0	0			REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF	REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.30242919921875	3	485.301612	1452.88301	-0.14311	-6.9453E-05	2.1419	0.0010395	1.9988	0.00097003	485.3026494534992	17.645	1.6869	17.438	17.166	18.853	-0.20669					80	33	4	0	0	0	1.1135	1	216	216		6.6596	0.65857	1	381270	+		17139	32352	11965	11989	19274	19274					0.17468099149982663
FPGAEPFGY	9	Unmodified	_FPGAEPFGY_					0	0	0			REV__ENST00000505145.1_1_5:177034264-177036693:+|nuORF	REV__ENST00000505145.1_1_5:177034264-177036693:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7252502441406	2	492.726718	983.438883	0.64059	0.00031564	-4.3655	-0.002151	-3.7249	-0.0018354	492.72441391473944	71.815	0.96526	71.815	71.528	72.493	0					62	24	4	0	0	0	0.56952	1	8728	8728		54.765	1.4132	1	1990500	+		17140	20031	11966	11990	19275	19275					-0.053498794022289076
FPGAPDKPLD	10	Unmodified	_FPGAPDKPLD_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8242797851562	2	528.771657	1055.52876	-0.16047	-8.4851E-05	-0.40646	-0.00021492	-0.56693	-0.00029978	528.7711719715534	61.597	0.60136	61.668	61.355	61.956	0.071125					21	14	2	0	0	0	0.03519	1	7012	7012		27.882	0	1	664640	+		17141	19655	11967	11991	19276	19276					0.00321750206330762
FPGAPWAPTL	10	Unmodified	_FPGAPWAPTL_					0	0	0			REV__nc|ENSG00000141448|Q92908-2|GATA6	REV__nc|ENSG00000141448|Q92908-2|GATA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2474975585938	2	528.779285	1055.54402	0.15197	8.0358E-05	-2.7179	-0.0014372	-2.5659	-0.0013568	529.2794064278701	59.355	0.45087	59.167	58.938	59.389	-0.18795					25	10	3	0	0	0	0.03519	1	6536	6536		29.15	4.9468	1	244400	+		17142	24089	11968	11992	19277	19277					0.018466617941840013
FPGARLLDL	9	Unmodified	_FPGARLLDL_					0	0	0			REV__nc|ENSG00000134602|Q9P289-2|STK26	REV__nc|ENSG00000134602|Q9P289-2|STK26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2936706542969	2	501.292559	1000.57057	-0.16241	-8.1415E-05	3.4189	0.0017139	3.2565	0.0016325	501.2941619709045	78.099	0.93408	77.837	77.399	78.333	-0.26202					43	21	4	0	0	0	0.014988	1	9298	9298		161.9	14.205	1	1404400	+		17143	23466	11969	11993	19278	19278					0.07030350685522535
FPGARLLDL	9	Unmodified	_FPGARLLDL_					0	0	0			REV__nc|ENSG00000134602|Q9P289-2|STK26	REV__nc|ENSG00000134602|Q9P289-2|STK26	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.292559	1000.57057	-0.073123	-3.6656E-05	4.2982	0.0021547	4.2251	0.002118	501.2948523911972	78.082	0.48956	78.082	77.752	78.242	0	0.10708	0.00094697	NaN	161.9	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189910	+		17144	23466	11969	11993							0.07030350685522535
FPGARLLDL	9	Unmodified	_FPGARLLDL_					0	0	0			REV__nc|ENSG00000134602|Q9P289-2|STK26	REV__nc|ENSG00000134602|Q9P289-2|STK26	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.292559	1000.57057	-0.33568	-0.00016827	4.7833	0.0023978	4.4476	0.0022295	501.2954009577913	78.087	0.45377	78.103	77.821	78.275	0.015907	0.12792	0.0014333	NaN	161.9	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120230	+		17145	23466	11969	11993							0.07030350685522535
FPGDPGNPGQN	11	Unmodified	_FPGDPGNPGQN_					0	0	0		nc|ENSG00000172752|A8TX70|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.8548583984375	2	550.243795	1098.47304	-0.63825	-0.00035119	-0.024959	-1.3734E-05	-0.66321	-0.00036493	550.2436968392722	82.202	4.6418	82.202	79.573	84.215	0					178	110	2	0	0	0	0.024797	1	9921	9921		72.879	6.45	1	546300			17146	8301	11970	11994	19279	19279					-0.07226082981264881
FPGETDQDF	9	Unmodified	_FPGETDQDF_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2391357421875	2	528.219454	1054.42436	-1.3101	-0.000692	-1.5973	-0.00084371	-2.9073	-0.0015357	528.2185223118053	63.047	0.18109	63.047	62.98	63.161	0					6	4	2	0	0	0	0.024535	1	7361	7361		12.207	0	1	65390			17147	5848	11971	11995	19280	19280					-0.1006799634105846
FPGLWLAL	8	Unmodified	_FPGLWLAL_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2791442871094	2	458.768189	915.521825	-0.042417	-1.9459E-05	0.040782	1.8709E-05	-0.0016352	-7.5017E-07	458.76811664864454	67.508	1.2696	67.27	67.038	68.308	-0.23814					38	30	2	0	0	0	0.027866	1	7772	7772		54.895	21.402	1	120710			17148	10387	11972	11996	19281	19281					0.060684821164159075
FPGLWLAL	8	Unmodified	_FPGLWLAL_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.768189	915.521825	0.78996	0.00036241	-0.43759	-0.00020075	0.35237	0.00016165	458.7678685852802	67.772	0.74729	67.517	67.033	67.78	-0.25516	0.18553	-0.0002683	NaN	54.895	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132930			17149	10387	11972	11996							0.060684821164159075
FPGLWLAL	8	Unmodified	_FPGLWLAL_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	458.768189	915.521825	-0.058829	-2.6989E-05	-0.069914	-3.2074E-05	-0.12874	-5.9063E-05	458.76789244190826	67.441	1.1456	67.207	67.012	68.158	-0.23376	-0.12438	6.9058E-05	NaN	54.895	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101550			17150	10387	11972	11996							0.060684821164159075
FPGQAVANV	9	Unmodified	_FPGQAVANV_					0	0	0		nc|ENSG00000115598|Q9HB29-2|IL1RL2;ENSG00000115598|ENST00000264257|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.26983642578125	2	451.74016	901.465767	0.10384	4.6907E-05	0.20932	9.456E-05	0.31316	0.00014147	451.7400277916483	46.909	0.57321	46.756	46.479	47.052	-0.15301					34	14	3	0	0	0	0.024412	1	4673	4673		31.955	14.59	1	656090			17151	3470	11973	11997	19282	19282					0.011092292089415423
FPGQKKLAE	9	Unmodified	_FPGQKKLAE_					0	0	0		ENST00000490517.5_1_17:17897468-17907868:+|nuORF	ENST00000490517.5_1_17:17897468-17907868:+|nuORF	ENST00000490517.5_1_17:17897468-17907868:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.277587890625	2	509.290017	1016.56548	-0.55256	-0.00028141	-0.11643	-5.9295E-05	-0.66898	-0.00034071	509.28992392096694	35.709	0.27015	35.498	35.34	35.611	-0.21095					10	6	2	0	0	0	0.024457	1	2719	2719		21.96	0	1	156160			17152	15434	11974	11998	19283	19283					0.05786046822890967
FPGSSGSNMIY	11	Unmodified	_FPGSSGSNMIY_					0	0	0		ENSG00000137463|ENST00000398955|MGARP	ENSG00000137463|ENST00000398955|MGARP	ENSG00000137463|ENST00000398955|MGARP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.2593994140625	2	580.258056	1158.50156	-1.0304	-0.00059791	4.3217	0.0025077	3.2912	0.0019098	580.2601299640689	42.75	1.0938	42.517	42.193	43.287	-0.2326					81	28	5	0	0	0	0.95664	1	3859	3859		46.457	3.9823	1	2643500			17153	5124	11975	11999	19284	19284					-0.07135101396352184
FPGVCKNGLCV	11	Unmodified	_FPGVCKNGLCV_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3261108398438	2	568.783187	1135.55182	1.7948	0.0010209	0.30712	0.00017469	2.102	0.0011956	568.783039349645	19.285	0.49573	19.052	18.878	19.374	-0.23345					16	9	3	0	0	0	0.024732	1	415	415		25.574	0	1	43117			17154	7509	11976	12000	19285	19285					-0.01053270272223017
FPGVPLLQV	9	Unmodified	_FPGVPLLQV_					0	0	0		nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000480946.6_1_8:144659238-144660323:-|nuORF	nc|ENSG00000147813|Q6XQN6-3|NAPRT	nc|ENSG00000147813|Q6XQN6-3|NAPRT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7982177734375	2	485.292028	968.569503	0.98495	0.00047799	-3.5545	-0.001725	-2.5695	-0.001247	485.29011624837847	59.457	0.51274	59.457	59.333	59.846	0					20	13	2	0	0	0	0.024325	1	6778	6778		40.573	24.931	1	284960			17155	5994	11977	12001	19286	19286					0.08396136316605407
FPGVPLLQV	9	Unmodified	_FPGVPLLQV_					0	0	0		nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000480946.6_1_8:144659238-144660323:-|nuORF	nc|ENSG00000147813|Q6XQN6-3|NAPRT	nc|ENSG00000147813|Q6XQN6-3|NAPRT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.292028	968.569503	-0.20278	-9.8407E-05	-2.4671	-0.0011973	-2.6699	-0.0012957	485.2907127202059	59.31	0.59235	59.396	59.277	59.869	0.085682	-0.032192	0.0006765	NaN	47.916	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254210			17156	5994	11977	12001							0.08396136316605407
FPGWSQCL	8	Unmodified	_FPGWSQCL_					0	0	0			REV__ENST00000495417.5_1_19:55105185-55110756:+|nuORF	REV__ENST00000495417.5_1_19:55105185-55110756:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7509765625	2	469.215463	936.416374	-0.32949	-0.0001546	-0.55977	-0.00026265	-0.88926	-0.00041726	469.2147802512387	30.151	0.24899	30.225	30.129	30.378	0.074314					7	5	2	0	0	0	0.027866	1	1859	1859		24.203	4.8428	1	26262	+		17157	21486	11978	12002	19287	19287					-0.05437802071514852
FPHACLKP	8	Unmodified	_FPHACLKP_					0	0	0		ENST00000451726.1_1_19:36205079-36205238:+|nuORF	ENST00000451726.1_1_19:36205079-36205238:+|nuORF	ENST00000451726.1_1_19:36205079-36205238:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.78076171875	2	456.741648	911.468743	0.80087	0.00036579	1.8878	0.00086222	2.6886	0.001228	456.7423642468684	49.256	0.68048	49.256	48.864	49.544	0					38	18	3	0	0	0	0.027866	1	5072	5072		19.36	1.0356	1	463740			17158	14526	11979	12003	19288	19288					0.009467810621117678
FPHLVLVDD	9	Unmodified	_FPHLVLVDD_					0	0	0		TMEM106C|p.S110L|1|0.35|ENSG00000134291|chr12:47965915-47965915|C/T|missense_variant	TMEM106C|p.S110L|1|0.35|ENSG00000134291|chr12:47965915-47965915|C/T|missense_variant	TMEM106C|p.S110L|1|0.35|ENSG00000134291|chr12:47965915-47965915|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.7903442382812	2	527.782025	1053.5495	-0.58037	-0.00030631	0.21714	0.0001146	-0.36323	-0.00019171	527.7818535615544	60.116	0.55699	59.916	59.691	60.248	-0.20016					24	14	2	0	0	0	0.024443	1	6895	6895		19.36	0	1	391220			17159	38083	11980	12004	19289	19289					0.024863405860060084
FPHNLSLTKII	11	Unmodified	_FPHNLSLTKII_					0	0	0			REV__ENST00000370766.7_1_X:134476327-134476507:-|nuORF	REV__ENST00000370766.7_1_X:134476327-134476507:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.882568359375	2	641.87953	1281.74451	1.496	0.00096027	2.9831	0.0019148	4.4792	0.0028751	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	0.97926	1	12280	12280		41.427	3.6151	1	2979200	+		17160	31139	11981	12005	19290	19290					0.11490511390979918
FPIATKRIAV	10	Unmodified	_FPIATKRIAV_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3502807617188	2	558.350409	1114.68626	-0.39044	-0.000218	-0.12143	-6.78E-05	-0.51187	-0.0002858	558.3502549387098	49.816	1.0794	49.89	49.391	50.47	0.074196					85	30	4	0	0	0	0.66532	1	5105	5105		69.628	6.0938	1	5975700			17161	8100	11982	12006	19291	19291					0.13350874536376978
FPIEAVKKN	9	Unmodified	_FPIEAVKKN_					0	0	0			REV__ENSG00000105409|ENST00000648268|ATP1A3	REV__ENSG00000105409|ENST00000648268|ATP1A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3018188476562	2	523.305667	1044.59678	0.35837	0.00018754	-4.1011	-0.0021461	-3.7427	-0.0019586	523.3034561801154	100.01	0.80638	99.881	99.471	100.28	-0.13364					42	23	2	0	0	0	0.75397	1	12414	12414		42.396	1.618	1	1402800	+		17162	21524	11983	12007	19292	19292					0.0762661985700106
FPIETTVHL	9	Unmodified	_FPIETTVHL_					0	0	0			REV__ENST00000277865.4_1_10:88811263-88811500:-|nuORF	REV__ENST00000277865.4_1_10:88811263-88811500:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	528.7899169921875	2	528.78985	1055.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.68	1	104.52	104.02	105.02	-0.16484								0	0	0	0.56622	1	13017	13017		44.117	1.6423	1		+		17163	29857	11984	12008	19293	19293					0.03958627103043
FPIFAILLF	9	Unmodified	_FPIFAILLF_					0	0	0		nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47	nc|ENSG00000196776|Q08722-2|CD47	nc|ENSG00000196776|Q08722-2|CD47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.8099365234375	2	540.828246	1079.64194	-1.5263	-0.00082548	-0.010474	-5.6648E-06	-1.5368	-0.00083114	540.827985851062	107.02	0.13507	106.88	106.76	106.9	-0.1346					10	5	2	0	0	0	0.024289	1	13289	13289		60.404	11.193	1	35650			17164	9920	11985	12009	19294	19294					0.10530470390153823
FPIFCFAETK	10	Unmodified	_FPIFCFAETK_					0	0	0			REV__ENST00000517419.5_1_6:112041237-112081100:-|nuORF	REV__ENST00000517419.5_1_6:112041237-112081100:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5595703125	3	401.535332	1201.58417	1.0299	0.00041353	-2.4279	-0.00097488	-1.398	-0.00056136	401.53425429564777	35.919	1.0581	35.702	35.31	36.368	-0.21661					46	25	2	0	0	0	0.03519	1	2709	2709		30.569	15.231	1	895980	+		17165	34215	11986	12010	19295	19295					-0.00856159597583428
FPIGILEDI	9	Unmodified	_FPIGILEDI_					0	0	0			REV__ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	REV__ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8004150390625	2	508.786776	1015.559	-0.56493	-0.00028743	-2.6488	-0.0013477	-3.2137	-0.0016351	508.7852793831521	31.151	0.58159	30.966	30.702	31.283	-0.18503					24	14	2	0	0	0	0.024	1	2058	2058		45.952	0	1	535800	+		17166	37789	11987	12011	19296	19296					0.05184108871515036
FPIGMGIVK	9	Unmodified	_FPIGMGIVK_					0	0	0		nc|ENSG00000170482|Q9UHI7-3|SLC23A1;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-2|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2841491699219	2	481.280606	960.546659	0.69698	0.00033544	2.9475	0.0014186	3.6445	0.001754	481.28186434173847	51.694	1.04	51.575	51.242	52.282	-0.11876					67	27	4	0	0	0	0.20304	2	5341	5329;5341		88.643	14.126	1	3598200			17167	8047	11988	12012	19297;19298	19298					0.06480793927505601
FPIGMGIVK	9	Unmodified	_FPIGMGIVK_					0	0	0		nc|ENSG00000170482|Q9UHI7-3|SLC23A1;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-2|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.2851257324219	2	481.280606	960.546659	0.86517	0.00041639	2.6862	0.0012928	3.5513	0.0017092	481.28176877309755	51.789	1.0556	51.605	51.298	52.354	-0.18405					63	27	4	0	0	0	0.31247	1	5352	5352		73.975	10.996	1	2977200			17168	8047	11988	12012	19299	19299					0.06480793927505601
FPIIRLAG	8	Unmodified	_FPIIRLAG_					0	0	0		ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.76116943359375	2	443.779088	885.543623	-0.21998	-9.7621E-05	4.4736	0.0019853	4.2536	0.0018877	443.7805701643903	23.926	0.43344	23.746	23.651	24.084	-0.17989					13	9	2	0	0	0	0.027866	1	993	993		33.516	5.2613	1	63435			17169	7212	11989	12013	19300	19300					0.09627286864997586
FPIIRLAG	8	Unmodified	_FPIIRLAG_					0	0	0		ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.779088	885.543623	2.2023	0.00097733	4.5908	0.0020373	6.7931	0.0030146	443.7813919759186	24.027	0.31228	23.846	23.759	24.072	-0.18089	0.050075	9.8413E-05	NaN	33.516	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40791			17170	7212	11989	12013							0.09627286864997586
FPILIVAGGL	10	Unmodified	_FPILIVAGGL_					0	0	0			REV__nc|ENSG00000262085|Q8NH06|OR1P1	REV__nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7781066894531	2	500.315503	998.616454	0.033004	1.6513E-05	-4.2149	-0.0021088	-4.1819	-0.0020923	500.31317497348385	69.499	0.50317	69.499	69.166	69.669	0					18	12	2	0	0	0	0.03519	1	8383	8383		44.531	0	1	168230	+		17171	37188	11990	12014	19301	19301					0.11708995867752492
FPINKDGREL	10	Unmodified	_FPINKDGREL_					0	0	0			REV__ENST00000491509.5_1_13:96539589-96543187:-|nuORF	REV__ENST00000491509.5_1_13:96539589-96543187:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.3028564453125	2	594.822212	1187.62987	-0.90125	-0.00053609	0.27453	0.00016329	-0.62673	-0.00037279	594.8227143399318	41.122	0.35412	40.895	40.69	41.044	-0.2278					15	8	2	0	0	0	0.03519	1	3604	3604		60.118	0	1	119430	+		17172	33726	11991	12015	19302	19302					0.04356201909035917
FPINYVEV	8	Unmodified	_FPINYVEV_					0	0	0		ENST00000467735.2_1_15:84280269-84287036:+|nuORF;nc|ENSG00000140600|Q99963-2|SH3GL3;ENSG00000140600|ENST00000427482|SH3GL3;nc|ENSG00000140600|Q99963-3|SH3GL3	ENST00000467735.2_1_15:84280269-84287036:+|nuORF	ENST00000467735.2_1_15:84280269-84287036:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.3363952636719	2	490.758018	979.501483	-0.49869	-0.00024474	2.9213	0.0014336	2.4226	0.0011889	490.75925659999234	82.158	0.88242	82.184	81.819	82.701	0.025711					41	20	3	0	0	0	0.027866	1	10189	10189		27.882	0	1	593340			17173	5432	11992	12016	19303	19303					0.010912666659578463
FPIPMEQI	8	Unmodified	_FPIPMEQI_					0	0	0			REV__nc|ENSG00000138075|Q9H222-2|ABCG5	REV__nc|ENSG00000138075|Q9H222-2|ABCG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.26898193359375	2	487.754421	973.494289	-0.8111	-0.00039562	4.3908	0.0021416	3.5797	0.001746	487.7567910610748	46.93	0.52129	46.989	46.693	47.214	0.059097					30	13	4	0	0	0	0.027866	1	4574	4574		52.299	4.6418	1	355430	+		17174	23813	11993	12017	19304	19304					0.006482107938609261
FPIPMEQI	8	Unmodified	_FPIPMEQI_					0	0	0			REV__nc|ENSG00000138075|Q9H222-2|ABCG5	REV__nc|ENSG00000138075|Q9H222-2|ABCG5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.754421	973.494289	-0.051317	-2.503E-05	3.6523	0.0017814	3.601	0.0017564	487.756074307402	46.961	0.44364	46.961	46.772	47.216	0	0.021069	0.00014322	NaN	52.299	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334550	+		17175	23813	11993	12017							0.006482107938609261
FPIPMEQI	8	Unmodified	_FPIPMEQI_					0	0	0			REV__nc|ENSG00000138075|Q9H222-2|ABCG5	REV__nc|ENSG00000138075|Q9H222-2|ABCG5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.754421	973.494289	0.26947	0.00013143	3.0741	0.0014994	3.3436	0.0016309	487.75589554626004	47.133	0.45922	46.98	46.736	47.196	-0.15301	0.040436	-0.00042079	NaN	52.299	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306470	+		17176	23813	11993	12017							0.006482107938609261
FPIPMEQI	8	Unmodified	_FPIPMEQI_					0	0	0			REV__nc|ENSG00000138075|Q9H222-2|ABCG5	REV__nc|ENSG00000138075|Q9H222-2|ABCG5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.754421	973.494289	-0.24121	-0.00011765	3.8165	0.0018615	3.5752	0.0017438	487.75625781065133	46.938	0.63274	46.841	46.645	47.278	-0.096649	-0.098394	0.00030335	NaN	52.299	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332770	+		17177	23813	11993	12017							0.006482107938609261
FPIPMEQI	8	Unmodified	_FPIPMEQI_					0	0	0			REV__nc|ENSG00000138075|Q9H222-2|ABCG5	REV__nc|ENSG00000138075|Q9H222-2|ABCG5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.754421	973.494289	0.21712	0.0001059	3.4181	0.0016672	3.6352	0.0017731	487.7558865940963	47.243	0.6245	46.973	46.764	47.389	-0.26939	0.033631	-8.5228E-05	NaN	52.299	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264690	+		17178	23813	11993	12017							0.006482107938609261
FPIPMEQI	8	Unmodified	_FPIPMEQI_					0	0	0			REV__nc|ENSG00000138075|Q9H222-2|ABCG5	REV__nc|ENSG00000138075|Q9H222-2|ABCG5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.754421	973.494289	-0.0067061	-3.2709E-06	3.1311	0.0015272	3.1244	0.0015239	487.756111826659	47.088	0.63292	46.894	46.678	47.311	-0.19387	-0.045969	-0.00036526	NaN	52.299	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332170	+		17179	23813	11993	12017							0.006482107938609261
FPIRLALC	8	Unmodified	_FPIRLALC_					0	0	0			REV__ENSG00000279395|ENST00000625203|OR5L1	REV__ENSG00000279395|ENST00000625203|OR5L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.77484130859375	2	466.772948	931.531344	3.157	0.0014736	1.2282	0.00057328	4.3852	0.0020469	466.7734057440043	19.546	0.77602	19.612	19.34	20.116	0.066195					26	15	3	0	0	0	0.98906	1	394	394		39.021	7.4426	1	183380	+		17180	29229	11994	12018	19305	19305					0.06283927130277789
FPITNREVVF	10	Unmodified	_FPITNREVVF_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.3560791015625	2	611.334956	1220.65536	-1.8175	-0.0011111	-2.787	-0.0017038	-4.6045	-0.0028149	611.3329477778423	94.451	0.71451	94.314	93.965	94.679	-0.13779					25	16	3	0	0	0	0.03519	1	11659	11659		40.778	11.608	1	87142	+		17181	29231	11995	12019	19306	19306					0.05385676431455977
FPIYYVFF	8	Unmodified	_FPIYYVFF_					0	0	0		nc|ENSG00000172548|Q0D2K0-2|NIPAL4;chr5:157463333-157468722|434|15.42|0.87|4.14|+|ENST00000435489|NIPAL4,NIPAL4;ENSG00000172548|ENST00000311946|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2694091796875	2	548.281129	1094.54771	-0.90343	-0.00049533	1.4055	0.00077062	0.50208	0.00027528	548.2811177800099	55.914	0.72357	55.757	55.572	56.295	-0.15655					24	18	2	0	0	0	0.027866	1	6011	6011		24.504	6.1796	1	236110			17182	402	11996	12020	19307	19307					0.004213315680317464
FPKDRWNN	8	Unmodified	_FPKDRWNN_					0	0	0		ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2970581054688	2	538.76724	1075.51993	0.5003	0.00026955	-0.041055	-2.2119E-05	0.45925	0.00024743	538.7679933460463	59.322	1.2059	59.322	58.86	60.066	0					43	32	3	0	0	0	0.027866	1	6813	6813		94.006	14.555	1	225640			17183	3444	11997	12021	19308	19308					-0.014811786394830051
FPKDRWNN	8	Unmodified	_FPKDRWNN_					0	0	0		ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	ENSG00000115419|ENST00000320717|GLS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.76724	1075.51993	-0.25221	-0.00013588	-0.78225	-0.00042145	-1.0345	-0.00055733	538.7675712776114	58.852	0.28837	58.937	58.703	58.991	0.085682	-0.1923	-0.00062365	NaN	94.006	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125380			17184	3444	11997	12021							-0.014811786394830051
FPKFLKGLQDA	11	Unmodified	_FPKFLKGLQDA_					0	0	0		nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	632.8626098632812	2	632.358431	1262.70231	0.59849	0.00037846	3.8293	0.0024215	4.4278	0.0028	632.3606978391502	105.3	0.7617	105.3	105	105.76	0					38	20	3	0	0	0	0.93459	1	13534	13534		49.536	8.1094	1	1601700			17185	5436	11998	12022	19309	19309					0.08146535982632486
FPKFLKGLQDA	11	Unmodified	_FPKFLKGLQDA_					0	0	0		nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	632.358431	1262.70231	0.67844	0.00042902	3.704	0.0023422	4.3824	0.0027712	632.3605642389583	105.23	0.50068	105.23	104.96	105.46	0.00097656	-0.043634	-0.00090761	NaN	49.536	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1780300			17186	5436	11998	12022							0.08146535982632486
FPKFLKGLQDA	11	Unmodified	_FPKFLKGLQDA_					0	0	0		nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	632.358431	1262.70231	-0.09466	-5.9859E-05	4.6513	0.0029413	4.5566	0.0028814	632.3612774559521	105.33	0.48516	105.33	105.09	105.58	-0.0015945	0.061061	0.00029051	NaN	49.536	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1739700			17187	5436	11998	12022							0.08146535982632486
FPKFLKGLQDA	11	Unmodified	_FPKFLKGLQDA_					0	0	0		nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	632.358431	1262.70231	-0.58008	-0.00036682	5.0419	0.0031883	4.4618	0.0028215	632.3613965730672	105.36	0.55785	105.24	105	105.56	-0.12444	-0.032134	0.00078449	NaN	49.536	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1907700			17188	5436	11998	12022							0.08146535982632486
FPKFLKGLQDA	11	Unmodified	_FPKFLKGLQDA_					0	0	0		nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	632.358431	1262.70231	-1.2957	-0.00081933	6.019	0.0038061	4.7233	0.0029868	632.361969490638	105.46	0.64989	105.33	105.02	105.67	-0.13099	0.058572	0.0020202	NaN	49.536	46	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2202000			17189	5436	11998	12022							0.08146535982632486
FPKFLKGLQDA	11	Unmodified	_FPKFLKGLQDA_					0	0	0		nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	632.358431	1262.70231	0.25392	0.00016057	4.3385	0.0027435	4.5924	0.0029041	632.3609782900546	105.37	0.64965	105.2	105.04	105.69	-0.16484	-0.068472	-0.00010508	NaN	49.536	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2975900			17190	5436	11998	12022							0.08146535982632486
FPKIKKKG	8	Unmodified	_FPKIKKKG_					0	0	0			REV__SMOC2|p.E371K|1|0.24|ENSG00000112562|chr6:168653054-168653054|G/A|missense_variant	REV__SMOC2|p.E371K|1|0.24|ENSG00000112562|chr6:168653054-168653054|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.75299072265625	2	473.315838	944.617122	-0.55847	-0.00026433	0.3328	0.00015752	-0.22567	-0.00010681	473.3158681553013	66.291	0.53935	66.046	65.812	66.351	-0.24517					20	13	2	0	0	0	0.027866	1	7567	7567		8.2313	0	1	135920	+		17191	37518	11999	12023	19310	19310					0.142598353074618
FPKIKKKG	8	Unmodified	_FPKIKKKG_					0	0	0			REV__SMOC2|p.E371K|1|0.24|ENSG00000112562|chr6:168653054-168653054|G/A|missense_variant	REV__SMOC2|p.E371K|1|0.24|ENSG00000112562|chr6:168653054-168653054|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.315838	944.617122	-0.50823	-0.00024056	0.47198	0.0002234	-0.036254	-1.716E-05	473.3158076965845	66.31	0.42754	66.097	65.915	66.343	-0.21327	0.025548	5.3968E-05	NaN	8.2313	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119200	+		17192	37518	11999	12023							0.142598353074618
FPKKVLPPF	9	Unmodified	_FPKKVLPPF_					0	0	0		ENST00000301332.2_1_8:145699090-145699315:+|nuORF	ENST00000301332.2_1_8:145699090-145699315:+|nuORF	ENST00000301332.2_1_8:145699090-145699315:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3045654296875	2	536.83132	1071.64809	-0.28591	-0.00015348	-4.0249	-0.0021607	-4.3108	-0.0023142	536.8287805401635	72.512	0.24256	72.512	72.414	72.656	0					7	5	2	0	0	0	0.024436	1	8844	8844		38.806	0	1	94544			17193	11926	12000	12024	19311	19311					0.11512988621689146
FPKSLNTTL	9	Unmodified	_FPKSLNTTL_					0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.28228759765625	2	510.78985	1019.56515	-0.38903	-0.00019871	2.604	0.0013301	2.2149	0.0011314	510.7907555458778	56.087	0.42385	56.087	55.927	56.351	0					16	11	2	0	0	0	0.024511	1	6214	6214		25.574	10.709	1	349670	+		17194	23058	12001	12025	19312	19312					0.056146271030456774
FPKSVLTFL	9	Unmodified	_FPKSVLTFL_					0	0	0			REV__nc|ENSG00000165526|Q96CM3-2|RPUSD4	REV__nc|ENSG00000165526|Q96CM3-2|RPUSD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7770385742188	2	526.312961	1050.61137	-0.31133	-0.00016386	1.0545	0.000555	0.74318	0.00039114	526.8138500133733	49.664	0.52498	49.513	49.256	49.781	-0.1512					16	13	2	0	0	0	0.024523	1	5132	5132		21.96	4.5949	1	244200	+		17195	25900	12002	12026	19313	19313					0.08808692005140983
FPLAAGIFF	9	Unmodified	_FPLAAGIFF_					0	0	0		ENSG00000139624|ENST00000317551|CERS5;ENST00000547852.1_1_12:50560026-50561080:-|nuORF;ENST00000549942.1_1_12:50541125-50561113:-|nuORF	ENSG00000139624|ENST00000317551|CERS5	ENSG00000139624|ENST00000317551|CERS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2431640625	2	491.773471	981.53239	-0.873	-0.00042932	-0.071854	-3.5336E-05	-0.94486	-0.00046465	491.7733379369131	37.79	0.57119	37.57	37.192	37.763	-0.2195					27	14	2	0	0	0	0.024475	1	3018	3018		21.702	0	1	181720			17196	5348	12003	12027	19314	19314					0.04088464770848077
FPLAPMELAC	10	Unmodified	_FPLAPMELAC_					0	0	0			REV__ENST00000570827.6_1_17:9548127-9548559:+|nuORF	REV__ENST00000570827.6_1_17:9548127-9548559:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.265380859375	2	546.266838	1090.51912	-0.91987	-0.0005025	-2.2459	-0.0012268	-3.1658	-0.0017293	546.265642390416	26.228	1.6264	25.992	25.803	27.429	-0.23603					107	41	4	0	0	0	1.1267	1	1394	1394		29.15	1.0681	1	26288000	+		17197	35396	12004	12028	19315	19315					-0.022514773950661038
FPLAPQGLYL	10	Unmodified	_FPLAPQGLYL_					0	0	0		ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8150634765625	2	559.815867	1117.61718	-0.85269	-0.00047735	0.22501	0.00012596	-0.62768	-0.00035139	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.91051	1	10042	10042		53.351	3.9099	1	10426000			17198	16083	12005	12029	19316	19316					0.06307790516802925
FPLAPQGLYL	10	Unmodified	_FPLAPQGLYL_					0	0	0		ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8148193359375	2	559.815867	1117.61718	-0.4095	-0.00022924	-0.24322	-0.00013616	-0.65272	-0.0003654	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.62679	1	9752	9752		73.975	9.7675	1	31806000			17199	16083	12005	12029	19317	19317					0.06307790516802925
FPLARIPLF	9	Unmodified	_FPLARIPLF_					0	0	0			REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7493896484375	2	537.328945	1072.64334	-0.3639	-0.00019553	-4.1935	-0.0022533	-4.5574	-0.0024488	537.8305316990675	76.116	0.67952	76.128	75.645	76.325	0.011642					33	17	3	0	0	0	0.024183	1	9289	9289		50.025	0	1	220350	+		17200	36981	12006	12030	19318	19318					0.10992104478941656
FPLCIILLF	9	Unmodified	_FPLCIILLF_					0	0	0			REV__ENSG00000182782|ENST00000328880|HCAR2	REV__ENSG00000182782|ENST00000328880|HCAR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3119506835938	2	539.822107	1077.62966	-1.3901	-0.0007504	-2.5843	-0.001395	-3.9744	-0.0021454	539.8188025247331	72.531	0.41905	72.333	72.163	72.582	-0.1981					16	9	2	0	0	0	0.024389	1	8471	8471		39.021	17.062	1	75453	+		17201	27507	12007	12031	19319	19319					0.0939511065548686
FPLCIPRVT	9	Unmodified	_FPLCIPRVT_					0	0	0			REV__nc|ENSG00000137648|Q9NRS4-4|TMPRSS4	REV__nc|ENSG00000137648|Q9NRS4-4|TMPRSS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.292724609375	2	523.296788	1044.57902	-0.0068924	-3.6068E-06	-2.1907	-0.0011464	-2.1976	-0.00115	523.2944380769846	51.642	1.3975	51.523	51.082	52.48	-0.11875					88	36	4	0	0	0	0.40179	1	5315	5315		65.803	4.8312	1	6381100	+		17202	23773	12008	12032	19320	19320					0.05851581330489353
FPLDQTAAL	9	Unmodified	_FPLDQTAAL_					0	0	0			REV__ENSG00000147654|ENST00000337573|EBAG9	REV__ENSG00000147654|ENST00000337573|EBAG9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2586364746094	2	488.260925	974.507297	-0.34126	-0.00016662	-4.3551	-0.0021264	-4.6964	-0.0022931	488.2588091580521	41.558	1.4917	41.581	41.147	42.638	0.023006					113	42	5	0	0	0	0.29158	2	3674	3674;3707		76.774	12.567	1	18745000	+		17203	24576	12009	12033	19321;19322	19321					0.01902365177613774
FPLDRIKH	8	Unmodified	_FPLDRIKH_					0	0	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2992553710938	2	513.298176	1024.5818	1.3299	0.00068263	1.4956	0.00076771	2.8255	0.0014503	513.2988083738969	23.122	0.5957	22.931	22.572	23.167	-0.19117					29	12	3	0	0	0	0.65272	1	865	865		71.378	11.084	1	603780	+		17204	25766	12010	12034	19323	19323					0.07049172779670698
FPLEIDLTL	9	Unmodified	_FPLEIDLTL_					0	0	0		ENST00000472854.5_1_10:97141330-97144028:-|nuORF	ENST00000472854.5_1_10:97141330-97144028:-|nuORF	ENST00000472854.5_1_10:97141330-97144028:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.8016967773438	2	530.799883	1059.58521	0.095075	5.0466E-05	3.0175	0.0016017	3.1126	0.0016522	530.8012940731893	101.31	1.3916	101.3	100.93	102.33	-0.0054474					58	31	3	0	0	0	0.29104	1	12911	12911		76.847	5.4687	1	1163100			17205	14995	12011	12035	19324	19324					0.0578037804300493
FPLEKQLP	8	Unmodified	_FPLEKQLP_					0	0	0			REV__ENST00000325509.4_1_8:72754616-72754814:-|nuORF	REV__ENST00000325509.4_1_8:72754616-72754814:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2925109863281	2	486.28166	970.548768	-0.56823	-0.00027632	0.97159	0.00047247	0.40336	0.00019615	486.2820102215632	81.402	0.53217	81.402	81.097	81.63	0					23	12	2	0	0	0	0.027866	1	10174	10174		13.775	0	1	250550	+		17206	30390	12012	12036	19325	19325					0.06231545936930161
FPLFKQLFL	9	Unmodified	_FPLFKQLFL_					0	0	0			REV__ENST00000487620.1_1_7:99673178-99679302:-|nuORF	REV__ENST00000487620.1_1_7:99673178-99679302:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.2952880859375	2	576.844428	1151.6743	-0.13095	-7.5535E-05	-2.9127	-0.0016802	-3.0437	-0.0017557	576.8401418903721	59.321	0.62869	59.407	59.099	59.728	0.085682					49	16	4	0	0	0	0.024487	1	6735	6735		31.955	8.9124	1	1228000	+		17207	33613	12013	12037	19326	19326					0.10453257793164994
FPLFKQLFL	9	Unmodified	_FPLFKQLFL_					0	0	0			REV__ENST00000487620.1_1_7:99673178-99679302:-|nuORF	REV__ENST00000487620.1_1_7:99673178-99679302:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.844428	1151.6743	-0.022663	-1.3073E-05	-6.6643	-0.0038443	-6.687	-0.0038573	576.84010514312	59.399	0.56734	59.399	59.108	59.675	0	0.00054218	-0.00011076	NaN	57.811	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1032500	+		17208	33613	12013	12037							0.10453257793164994
FPLGLAVVLV	10	Unmodified	_FPLGLAVVLV_					0	0	0			REV__TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	REV__TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.3287353515625	2	514.331153	1026.64775	-0.01869	-9.613E-06	-3.4765	-0.0017881	-3.4952	-0.0017977	514.329205433969	69.941	0.69779	69.941	69.383	70.081	0					43	17	4	0	0	0	0.88914	1	8432	8432		54.765	7.1073	1	1996100	+		17209	23892	12014	12038	19327	19327					0.13549568901839848
FPLGSRPL	8	Unmodified	_FPLGSRPL_					0	0	0		ENST00000373045.10_1_1:38259590-38259821:+|nuORF	ENST00000373045.10_1_1:38259590-38259821:+|nuORF	ENST00000373045.10_1_1:38259590-38259821:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.7611083984375	2	443.760895	885.507237	-0.72391	-0.00032124	1.019	0.00045221	0.29513	0.00013097	443.7612346166442	62.692	0.92646	62.692	62.446	63.373	0					44	23	2	0	0	0	0.91239	1	7299	7299		50.025	2.1089	1	2836300			17210	13066	12015	12039	19328	19328					0.0599040996827398
FPLHVIVKV	9	Unmodified	_FPLHVIVKV_					0	0	0			REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	REV__nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.80859375	2	526.33677	1050.65899	0.27595	0.00014524	-4.4399	-0.0023369	-4.164	-0.0021916	526.3345013321489	57.538	0.27206	57.363	57.149	57.421	-0.1749					10	6	2	0	0	0	0.024535	1	6434	6434		7.1934	0	1	92973	+		17211	36873	12016	12040	19329	19329					0.1356839099598801
FPLIAVFDI	9	Unmodified	_FPLIAVFDI_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7993774414062	2	517.799686	1033.58482	-0.16646	-8.6191E-05	-0.28211	-0.00014608	-0.44857	-0.00023227	517.7995230466181	104.69	1.9891	104.69	104.24	106.23	0					121	63	4	0	0	0	0.36105	1	13482	13482		68.485	8.0811	1	9188300	+		17212	23034;25957;33686	12017	12041	19330	19330					0.06937003113807805
FPLIAVFDI	9	Unmodified	_FPLIAVFDI_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7990112304688	2	517.799686	1033.58482	-0.31133	-0.00016121	-0.084203	-4.36E-05	-0.39553	-0.00020481	517.7996284133957	104.73	2.026	104.73	104.18	106.21	-0.0015945					122	64	4	0	0	0	0.36105	1	13416	13416		68.485	2.6815	1	8883900	+		17213	23034;25957;33686	12017	12041	19331	19331					0.06937003113807805
FPLIAVFDI	9	Unmodified	_FPLIAVFDI_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7994384765625	2	517.799686	1033.58482	-0.43133	-0.00022335	-0.18303	-9.4772E-05	-0.61436	-0.00031812	517.79963984843	104.54	2.3033	104.41	104.06	106.36	-0.12927					189	82	5	0	0	0	0.52323	1	13153	13153		57.811	18.79	1	24685000	+		17214	23034;25957;33686	12017	12041	19332	19332					0.06937003113807805
FPLIAVFDI	9	Unmodified	_FPLIAVFDI_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7982788085938	2	517.799686	1033.58482	-1.109	-0.00057426	1.4275	0.00073917	0.31849	0.00016491	518.3021792317825	107.48	0.12276	107.34	107.23	107.35	-0.1346					7	5	2	0	0	0	0.36105	1	13339	13339		68.485	0	1	338120	+		17215	23034;25957;33686	12017	12041	19333	19333					0.06937003113807805
FPLIAVFDI	9	Unmodified	_FPLIAVFDI_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	517.799686	1033.58482	-1.109	-0.00057426	1.4275	0.00073917	0.31849	0.00016491	518.3021792317825	107.48	0.12276	107.34	107.23	107.35	-0.1346	0	0	NaN	68.485	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338120	+		17216	23034;25957;33686	12017	12041							0.06937003113807805
FPLKTNKEI	9	Unmodified	_FPLKTNKEI_					0	0	0		ENST00000459872.1_1_6:10557103-10619499:+|nuORF;nc|ENSG00000111846|Q8N0V5-2|GCNT2	ENST00000459872.1_1_6:10557103-10619499:+|nuORF	ENST00000459872.1_1_6:10557103-10619499:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3165283203125	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.53979	1	10848	10848		56.721	7.185	1	3438300			17217	14642	12018	12042	19334	19334					0.08222889028456848
FPLLGHLISL	10	Unmodified	_FPLLGHLISL_					0	0	0		ENST00000218432.9_1_X:71417166-71417373:+|nuORF	ENST00000218432.9_1_X:71417166-71417373:+|nuORF	ENST00000218432.9_1_X:71417166-71417373:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.3154907226562	2	555.33951	1108.66447	0.65134	0.00036172	-0.91316	-0.00050712	-0.26182	-0.0001454	555.3388281179624	67.796	0.38396	67.541	67.236	67.62	-0.25516					12	8	2	0	0	0	0.03519	1	7803	7803		30.504	21.81	1	83367			17218	11168	12019	12043	19335	19335					0.11448069787820714
FPLLIMLSL	9	Unmodified	_FPLLIMLSL_					0	0	0		ENSG00000167895|ENST00000318430|TMC8;ENST00000591144.1_1_17:76134504-76137190:+|nuORF;nc|ENSG00000167895|Q8IU68-2|TMC8	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3074340820312	2	523.819564	1045.62458	0.0517	2.7081E-05	3.0057	0.0015744	3.0574	0.0016015	523.8210424100536	71.247	0.53304	71.258	70.976	71.509	0.010735					22	13	2	0	0	0	0.024386	1	8577	8577		33.516	0	1	307690			17219	7748	12020	12044	19336	19336					0.1035880679287402
FPLLRRQP	8	Unmodified	_FPLLRRQP_					0	0	0			REV__ENST00000586814.5_1_19:9875654-9896712:-|nuORF	REV__ENST00000586814.5_1_19:9875654-9896712:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.8156127929688	2	513.813993	1025.61343	-0.52251	-0.00026847	3.1231	0.0016047	2.6006	0.0013362	513.8154753786599	44.992	0.86298	44.739	44.429	45.292	-0.25252					54	22	4	0	0	0	0.96719	1	4223	4223		42.474	0.078325	1	3021400	+		17220	35607	12021	12045	19337	19337					0.10165165533612708
FPLLRRQP	8	Unmodified	_FPLLRRQP_					0	0	0			REV__ENST00000586814.5_1_19:9875654-9896712:-|nuORF	REV__ENST00000586814.5_1_19:9875654-9896712:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.81591796875	2	513.813993	1025.61343	-0.62035	-0.00031874	3.2051	0.0016468	2.5848	0.0013281	513.8154826987353	44.956	0.96857	44.745	44.184	45.153	-0.21109					59	25	4	0	0	0	1.0239	1	4216	4216		33.516	3.0119	1	2705300	+		17221	35607	12021	12045	19338	19338					0.10165165533612708
FPLNMKKAI	9	Unmodified	_FPLNMKKAI_					0	0	0			REV__ENST00000478293.1_1_10:129913938-129914013:-|nuORF	REV__ENST00000478293.1_1_10:129913938-129914013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7986450195312	2	531.312438	1060.61032	-0.19406	-0.00010311	2.0752	0.0011026	1.8811	0.00099946	531.3143637277317	99.201	0.66574	99.211	98.78	99.446	0.010239					19	14	2	0	0	0	0.024263	1	12591	12591		60.972	0	1	34527	+		17222	33363	12022	12046	19339	19339					0.08244154364570022
FPLPDEKTK	9	Unmodified	_FPLPDEKTK_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000555787.1_1_14:90736495-90738748:+|nuORF;ENST00000423961.1_1_7:27502029-27502443:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.27880859375	2	537.795132	1073.57571	-0.80717	-0.00043409	2.0502	0.0011026	1.243	0.00066848	538.2984145125595	45.395	0.60047	45.395	45.079	45.679	0					42	17	4	0	0	0	0.024381	1	4444	4444		37.159	2.9866	1	508900			17223	2245	12023	12047	19340	19340					0.04186609757448423
FPLPKTIW	8	Unmodified	_FPLPKTIW_					0	0	0		ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29254150390625	2	501.294571	1000.57459	-0.56502	-0.00028324	-4.3581	-0.0021847	-4.9231	-0.0024679	501.2925730983912	57.332	1.441	57.165	56.323	57.764	-0.1672					184	37	9	0	0	0	0.59392	1	6314	6314		76.847	2.33	1	59040000			17224	8700	12024	12048	19341	19341					0.07432440179218247
FPLPLSLP	8	Unmodified	_FPLPLSLP_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|91|3|anti-sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|91|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2427978515625	2	442.268022	882.521491	-0.60896	-0.00026932	1.7177	0.00075967	1.1087	0.00049035	442.2711240573626	38.241	0.57363	38.159	37.918	38.492	-0.082516					37	15	4	0	0	0	0.027866	1	3175	3175		37.028	15.326	1	334610	+		17225	36200	12025	12049	19342	19342					0.07553062396561927
FPLPLSLP	8	Unmodified	_FPLPLSLP_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|91|3|anti-sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|91|3|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.268022	882.521491	-1.2197	-0.00053942	-1.6042	-0.00070947	-2.8238	-0.0012489	442.26756404909264	38.086	0.33295	38.086	37.769	38.102	0	-0.036443	-0.0012023	NaN	20.482	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136770	+		17226	36200	12025	12049							0.07553062396561927
FPLRLILV	8	Unmodified	_FPLRLILV_					0	0	0			REV__ENSG00000221836|ENST00000641693|OR2A5	REV__ENSG00000221836|ENST00000641693|OR2A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7767639160156	2	485.826038	969.637523	-1.1107	-0.00053961	1.9355	0.00094032	0.82481	0.00040072	485.8268998750008	29.484	0.31722	29.562	29.368	29.685	0.078344					12	7	2	0	0	0	0.027866	1	1756	1756		4.6817	3.3541	1	53691	+		17227	28830	12026	12050	19343	19343					0.15149005967282392
FPLRLILV	8	Unmodified	_FPLRLILV_					0	0	0			REV__ENSG00000221836|ENST00000641693|OR2A5	REV__ENSG00000221836|ENST00000641693|OR2A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.826038	969.637523	-0.42466	-0.00020631	-4.1991	-0.00204	-4.6238	-0.0022464	485.8238886151869	30.003	0.3359	29.759	29.612	29.948	-0.24415	0.030124	-0.00015837	NaN	1.4648	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52296	+		17228	28830	12026	12050							0.15149005967282392
FPLRLILV	8	Unmodified	_FPLRLILV_					0	0	0			REV__ENSG00000221836|ENST00000641693|OR2A5	REV__ENSG00000221836|ENST00000641693|OR2A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.826038	969.637523	-0.81835	-0.00039757	-3.3524	-0.0016287	-4.1707	-0.0020262	485.82419487338626	29.955	0.42587	29.78	29.531	29.957	-0.17472	0.051581	0.00066439	NaN	1.4648	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86636	+		17229	28830	12026	12050							0.15149005967282392
FPLRLILV	8	Unmodified	_FPLRLILV_					0	0	0			REV__ENSG00000221836|ENST00000641693|OR2A5	REV__ENSG00000221836|ENST00000641693|OR2A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.826038	969.637523	0.11049	5.3677E-05	-4.5501	-0.0022105	-4.4396	-0.0021569	485.82378350822864	29.963	0.43038	29.813	29.626	30.056	-0.14952	0.084539	-0.00049936	NaN	1.4648	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112630	+		17230	28830	12026	12050							0.15149005967282392
FPLRPDLAVDV	11	Unmodified	_FPLRPDLAVDV_					0	0	0		ENST00000498511.5_1_19:54866879-54867911:-|nuORF	ENST00000498511.5_1_19:54866879-54867911:-|nuORF	ENST00000498511.5_1_19:54866879-54867911:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.3505859375	2	621.348063	1240.68157	0.16814	0.00010447	2.6679	0.0016577	2.836	0.0017622	621.3496031871412	102.8	0.3852	102.81	102.63	103.01	0.0054245					24	9	3	0	0	0	0.99147	1	13145	13145		29.17	1.0886	1	1243900			17231	15621	12027	12051	19344	19344					0.07085945602921129
FPLSLSPSL	9	Unmodified	_FPLSLSPSL_					0	0	0		ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.78692626953125	2	480.773668	959.532783	-0.91639	-0.00044057	-1.8651	-0.00089668	-2.7815	-0.0013373	480.77256282617844	29.785	0.6447	29.785	29.333	29.977	0					20	15	2	0	0	0	0.024436	1	1838	1838		38.806	14.603	1	103930			17232	16319	12028	12052	19345	19345					0.05139839700041193
FPLSLSPSL	9	Unmodified	_FPLSLSPSL_					0	0	0		ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.773668	959.532783	-0.42342	-0.00020357	-2.3615	-0.0011354	-2.785	-0.0013389	480.77247947981573	29.728	0.48679	29.731	29.388	29.875	0.0031376	0.22305	0.0013571	NaN	30.504	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79348			17233	16319	12028	12052							0.05139839700041193
FPLSLSPSL	9	Unmodified	_FPLSLSPSL_					0	0	0		ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	480.773668	959.532783	-0.74201	-0.00035674	-3.525	-0.0016947	-4.2671	-0.0020515	480.7725922679314	29.413	0.95329	29.491	29.054	30.007	0.078344	-0.016827	0.00023837	NaN	30.504	63	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178690			17234	16319	12028	12052							0.05139839700041193
FPLSLSPSL	9	Unmodified	_FPLSLSPSL_					0	0	0		ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.773668	959.532783	-0.3243	-0.00015591	-4.6607	-0.0022408	-4.985	-0.0023967	480.7714594550686	29.62	0.72969	29.375	28.924	29.654	-0.24524	-0.13294	-0.00085364	NaN	30.504	23	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179050			17235	16319	12028	12052							0.05139839700041193
FPLSLSPSL	9	Unmodified	_FPLSLSPSL_					0	0	0		ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.773668	959.532783	-0.71958	-0.00034595	-4.0441	-0.0019443	-4.7637	-0.0022903	480.7717948307718	29.505	0.67954	29.332	28.981	29.66	-0.17258	-0.17589	-0.00026075	NaN	30.504	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123760			17236	16319	12028	12052							0.05139839700041193
FPLSLSPSL	9	Unmodified	_FPLSLSPSL_					0	0	0		ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	ENST00000533683.6_2_19:14201006-14201489:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.773668	959.532783	0.05433	2.6121E-05	-6.3378	-0.0030471	-6.2835	-0.0030209	480.7702508953686	29.484	0.96677	29.334	28.956	29.923	-0.14952	-0.1741	-0.0024662	NaN	30.504	34	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117370			17237	16319	12028	12052							0.05139839700041193
FPLSPRKL	8	Unmodified	_FPLSPRKL_					0	0	0			REV__ENST00000466317.1_1_17:17124695-17126113:-|nuORF	REV__ENST00000466317.1_1_17:17124695-17126113:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.30108642578125	2	479.297645	956.580737	0.85285	0.00040877	-0.52953	-0.0002538	0.32331	0.00015496	479.29716956746876	69.973	1.4403	69.973	69.547	70.987	0					69	38	4	0	0	0	0.99042	1	8474	8474		38.806	0	1	6097800	+		17238	33029	12029	12053	19346	19346					0.10070958410744879
FPLSSLANL	9	Unmodified	_FPLSSLANL_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2829284667969	2	481.271293	960.528032	0.47244	0.00022737	-0.67584	-0.00032526	-0.20341	-9.7893E-05	481.27136371207035	51.813	0.54335	51.694	51.468	52.011	-0.11876					30	14	4	0	0	0	0.021513	1	5318	5318		93.195	24.409	1	525540			17239	3091	12030	12054	19347	19347					0.04618955557270965
FPLTTSSLSL	10	Unmodified	_FPLTTSSLSL_					0	0	0			REV__ENST00000372072.7_1_X:109416808-109416865:+|nuORF	REV__ENST00000372072.7_1_X:109416808-109416865:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2694091796875	2	533.294965	1064.57538	-0.80664	-0.00043018	-2.4894	-0.0013276	-3.296	-0.0017578	533.2932458565526	82.697	0.81742	82.697	82.406	83.223	0					24	18	2	0	0	0	0.03519	1	10391	10391		49.442	0	1	104810	+		17240	31190	12031	12055	19348	19348					0.04567190037619184
FPLVKSAL	8	Unmodified	_FPLVKSAL_					0	0	0		ENST00000373335.3_1_X:77154999-77157275:+|nuORF;ENST00000475465.1_1_X:77154999-77158279:+|nuORF;ENSG00000131174|ENST00000650309|COX7B	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.7734680175781	2	437.773471	873.53239	0.80824	0.00035383	-0.63292	-0.00027707	0.17532	7.6751E-05	437.77305006387166	59.435	0.71873	59.186	58.93	59.648	-0.24842					35	17	3	0	0	0	0.2822	1	6561	6561		119.56	22.084	1	833630			17241	4504	12032	12056	19349	19349					0.09056464770844741
FPLVKSAL	8	Unmodified	_FPLVKSAL_					0	0	0		ENST00000373335.3_1_X:77154999-77157275:+|nuORF;ENST00000475465.1_1_X:77154999-77158279:+|nuORF;ENSG00000131174|ENST00000650309|COX7B	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.773471	873.53239	1.2179	0.00053316	-0.82442	-0.00036091	0.39347	0.00017225	437.77290761436893	59.379	0.52822	59.379	59.07	59.598	0	0.10871	-0.00040237	NaN	119.56	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145710			17242	4504	12032	12056							0.09056464770844741
FPLVKSAL	8	Unmodified	_FPLVKSAL_					0	0	0		ENST00000373335.3_1_X:77154999-77157275:+|nuORF;ENST00000475465.1_1_X:77154999-77158279:+|nuORF;ENSG00000131174|ENST00000650309|COX7B	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	437.773471	873.53239	1.1502	0.00050351	0.25792	0.00011291	1.4081	0.00061643	437.7730747910415	59.563	0.54887	59.363	59.028	59.577	-0.20016	0.092914	0.00054527	NaN	119.56	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154160			17243	4504	12032	12056							0.09056464770844741
FPLVKSAL	8	Unmodified	_FPLVKSAL_					0	0	0		ENST00000373335.3_1_X:77154999-77157275:+|nuORF;ENST00000475465.1_1_X:77154999-77158279:+|nuORF;ENSG00000131174|ENST00000650309|COX7B	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	437.773471	873.53239	0.58371	0.00025553	-0.34188	-0.00014967	0.24182	0.00010586	437.77311735916015	59.219	0.47499	59.304	59.026	59.501	0.085682	0.034421	2.0108E-05	NaN	119.56	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137520			17244	4504	12032	12056							0.09056464770844741
FPLVKSAL	8	Unmodified	_FPLVKSAL_					0	0	0		ENST00000373335.3_1_X:77154999-77157275:+|nuORF;ENST00000475465.1_1_X:77154999-77158279:+|nuORF;ENSG00000131174|ENST00000650309|COX7B	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.773471	873.53239	0.29948	0.00013111	0.00047933	2.0984E-07	0.29996	0.00013132	437.77330014284973	59.408	0.72189	59.216	58.934	59.656	-0.19188	-0.053463	0.00031986	NaN	119.56	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761880			17245	4504	12032	12056							0.09056464770844741
FPLVKSAL	8	Unmodified	_FPLVKSAL_					0	0	0		ENST00000373335.3_1_X:77154999-77157275:+|nuORF;ENST00000475465.1_1_X:77154999-77158279:+|nuORF;ENSG00000131174|ENST00000650309|COX7B	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	ENST00000373335.3_1_X:77154999-77157275:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.773471	873.53239	0.47651	0.0002086	-0.38213	-0.00016729	0.094377	4.1316E-05	437.7731836830063	59.352	0.63906	59.171	58.872	59.511	-0.18134	-0.099098	-1.5133E-05	NaN	119.56	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	916560			17246	4504	12032	12056							0.09056464770844741
FPLVRLLN	8	Unmodified	_FPLVRLLN_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MSMS	OPSCC_39_ClassI_Rep-3	3	486.3086242675781	2	486.30547	970.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.94	1	106.94	106.44	107.44	0.0018311								0	0	0	0.68408	1	13648	13648		42.474	7.2737	1		+		17247	22056	12033	12057	19350	19350					0.10991244927788557
FPLVSHLAAYV	11	Unmodified	_FPLVSHLAAYV_					0	0	0		ENST00000268605.11_1_16:67209235-67209376:+|nuORF	ENST00000268605.11_1_16:67209235-67209376:+|nuORF	ENST00000268605.11_1_16:67209235-67209376:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.8362426757812	2	608.839874	1215.66519	-1.5508	-0.00094421	-3.5804	-0.0021799	-5.1312	-0.0031241	608.8375823790956	109.85	0.61025	109.72	109.5	110.11	-0.13983					81	26	5	0	0	0	1.0685	1	13485	13485		19.997	1.7347	1	5424900			17248	11629	12034	12058	19351	19351					0.06598864436841723
FPLVYVLND	9	Unmodified	_FPLVYVLND_					0	0	0		ENSG00000085465|ENST00000369732|OVGP1	ENSG00000085465|ENST00000369732|OVGP1	ENSG00000085465|ENST00000369732|OVGP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2964477539062	2	540.292225	1078.5699	-0.051919	-2.8051E-05	-1.8251	-0.00098609	-1.877	-0.0010141	540.2900795954662	88.243	1.2471	88.261	87.678	88.925	0.018555					46	29	3	0	0	0	0.024443	1	10962	10962		35.201	21.425	1	92566			17249	1791	12035	12059	19352	19352					0.03375511245803864
FPLWESLKV	9	Unmodified	_FPLWESLKV_					0	0	0		ENST00000484768.1_1_3:66312029-66419931:+|nuORF	ENST00000484768.1_1_3:66312029-66419931:+|nuORF	ENST00000484768.1_1_3:66312029-66419931:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8135986328125	2	559.815867	1117.61718	0.21173	0.00011853	-3.6579	-0.0020477	-3.4461	-0.0019292	559.8137100124266	76.455	1.0995	76.467	75.717	76.816	0.011635					64	27	3	0	0	0	0.80003	1	9363	9363		39.253	1.4413	1	1542400			17250	15312	12036	12060	19353	19353					0.06307790516802925
FPLWVSLPRQ	10	Unmodified	_FPLWVSLPRQ_					0	0	0			REV__ENST00000498084.5_1_20:34257546-34261984:-|nuORF	REV__ENST00000498084.5_1_20:34257546-34261984:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.9057922363281	3	414.904636	1241.69208	-0.12171	-5.0498E-05	2.546	0.0010563	2.4243	0.0010058	414.905759165599	21.171	1.9169	21.171	20.562	22.479	0					106	39	5	0	0	0	1.1333	1	669	669		28.081	3.8497	1	3796700	+		17251	33869	12037	12061	19354	19354					0.08089973048026877
FPMEERIFN	9	Oxidation (M)	_FPM(Oxidation (M))EERIFN_		FPM(1)EERIFN		FPM(88)EERIFN	0	0	1		ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	599.3109741210938	2	599.781699	1197.54884	-1.6374	-0.00098211	0.89517	0.0005369	-0.74227	-0.0004452	599.7822827769587	82.728	0.42936	82.728	82.449	82.878	0					12	9	2	0	0	0	0.022083	1	10336	10336		87.754	10.437	1	70392			17252	9944	12038	12062	19355	19355		415			-0.04202822125353123
FPMEERIFN	9	Oxidation (M)	_FPM(Oxidation (M))EERIFN_					0	0	1		ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	599.781699	1197.54884	1.3367	0.0008017	-1.6075	-0.00096416	-0.27086	-0.00016246	599.7808373976986	82.698	0.30206	82.588	82.422	82.724	-0.11006	0.05313	-0.0023719	NaN	87.754	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65077			17253	9944	12038	12062				415			-0.04202822125353123
FPMELRQFL	9	Oxidation (M)	_FPM(Oxidation (M))ELRQFL_		FPM(1)ELRQFL		FPM(85)ELRQFL	0	0	1		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	598.8101806640625	2	598.810259	1195.60597	-1.9041	-0.0011402	1.8702	0.0011199	-0.03398	-2.0348E-05	598.8111591379419	73.165	0.88685	73.165	72.698	73.585	0					68	22	4	0	0	0	0.22902	2	8932	8904;8932		85.161	25.043	1	2160300			17254	7843	12039	12063	19356;19357	19357		321			0.015986451510343613
FPMELRQFL	9	Oxidation (M)	_FPM(Oxidation (M))ELRQFL_		FPM(1)ELRQFL		FPM(85)ELRQFL	0	0	1		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	598.8101196289062	2	598.810259	1195.60597	-0.80304	-0.00048087	0.82724	0.00049536	0.0242	1.4491E-05	598.8104978523805	73.453	0.8169	73.182	72.76	73.577	-0.27126					66	20	4	0	0	0	0.22902	1	8921	8921		85.161	32.224	1	2040400			17255	7843	12039	12063	19358	19358		321			0.015986451510343613
FPMELRQFL	9	Oxidation (M)	_FPM(Oxidation (M))ELRQFL_		FPM(1)ELRQFL		FPM(96)ELRQFL	0	0	1		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	598.8104248046875	2	598.810259	1195.60597	-0.95797	-0.00057364	1.014	0.00060722	0.056078	3.358E-05	598.8106086175296	73.159	0.86445	73.169	72.693	73.558	0.0096512					70	21	4	0	0	0	0.16638	2	8861	8832;8861		95.815	24.189	1	2202800			17256	7843	12039	12063	19359;19360	19360		321			0.015986451510343613
FPMMCTLLD	9	Unmodified	_FPMMCTLLD_					0	0	0			REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF	REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2944946289062	2	535.739599	1069.46465	-0.048989	-2.6245E-05	-1.5761	-0.00084437	-1.6251	-0.00087061	535.7390862695473	75.076	0.37302	74.8	74.558	74.931	-0.27573					10	8	2	0	0	0	0.024381	1	8824	8824		45.952	0	1	53458	+		17257	29281	12040	12064	19361	19361					-0.06730812538103237
FPMQELQV	8	Unmodified	_FPMQELQV_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2515869140625	2	496.249503	990.484453	0.72129	0.00035794	3.3626	0.0016687	4.0839	0.0020266	496.25091511055354	76.904	0.79115	76.904	76.719	77.51	0					30	18	2	0	0	0	0.94504	1	9488	9488		45.972	3.5761	1	760270			17258	1240	12041	12065	19362	19362					-0.011169772114953957
FPMTPEWDV	9	Oxidation (M)	_FPM(Oxidation (M))TPEWDV_		FPM(1)TPEWDV		FPM(41)TPEWDV	0	0	1		nc|ENSG00000173320|Q9P2F5-2|STOX2;ENSG00000173320|ENST00000308497|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.8453979492188	2	569.2497	1136.48485	-2.1002	-0.0011955	-1.1678	-0.00066476	-3.268	-0.0018603	569.2483408921534	38.588	1.6779	38.616	37.746	39.424	0.027275					99	46	3	0	0	0	0.024325	1	3218	3218		40.573	6.4001	1	303110			17259	8365	12042	12066	19363	19363		345			-0.07793602282299616
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.778076171875	2	486.779285	971.544017	-0.39542	-0.00019248	-0.56475	-0.00027491	-0.96017	-0.00046739	486.77885325897273	56.629	1.4209	56.629	55.963	57.384	0					109	39	4	0	0	0	0.013924	8	6301	6290;6301;6313;6325;6338;6351;6363;6376		167.23	35.953	1	18724000			17260	5683	12043	12067	19364;19365;19366;19367;19368;19369;19370;19371	19365					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7789001464844	2	486.779285	971.544017	-0.53633	-0.00026107	-0.70666	-0.00034399	-1.243	-0.00060506	486.7787235480432	56.747	1.3734	56.583	56.058	57.432	-0.16431					106	37	4	0	0	0	0.013924	8	6359	6275;6285;6295;6307;6319;6331;6344;6359		167.23	67.854	1	18885000			17261	5683	12043	12067	19372;19373;19374;19375;19376;19377;19378;19379	19379					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7777099609375	2	486.779285	971.544017	-0.83055	-0.00040429	-0.10485	-5.1037E-05	-0.93539	-0.00045533	486.7791155363269	56.454	1.7667	56.552	55.999	57.766	0.097897					120	48	4	0	0	0	0.030064	6	6226	6190;6202;6214;6226;6238;6252		141.52	59.28	1	18453000			17262	5683	12043	12067	19380;19381;19382;19383;19384;19385	19383					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.779285	971.544017	0.40189	0.00019563	-0.96217	-0.00046837	-0.56028	-0.00027273	486.77868259556493	56.624	0.23507	56.399	56.229	56.464	-0.22479	-0.14147	-0.00052493	NaN	167.23	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78638			17263	5683	12043	12067							0.057106617941940385
FPNLARVL	8	Unmodified	_FPNLARVL_					0	0	0		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.282470703125	2	465.281995	928.549437	-0.58767	-0.00027343	0.56147	0.00026124	-0.026206	-1.2193E-05	465.28206031836805	69.517	1.7711	69.25	67.933	69.704	-0.26724					115	42	4	0	0	0	0.29372	3	8063	8028;8063;8073		114.59	22.395	1	1206600			17264	6848	12044	12068	19386;19387;19388	19387					0.08230385376668892
FPNLARVL	8	Unmodified	_FPNLARVL_					0	0	0		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.2825927734375	2	465.281995	928.549437	0.26181	0.00012182	-0.36728	-0.00017089	-0.10547	-4.9072E-05	465.28163640521615	69.43	1.8281	69.18	67.78	69.608	-0.25063					105	44	3	0	0	0	0.43637	3	8059	8046;8059;8071		92.191	20.813	1	1590600			17265	6848	12044	12068	19389;19390;19391	19390					0.08230385376668892
FPNLARVL	8	Unmodified	_FPNLARVL_					0	0	0		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.2821044921875	2	465.281995	928.549437	-0.20307	-9.4485E-05	0.11622	5.4074E-05	-0.086853	-4.0411E-05	465.2818125038082	69.422	2.2456	69.199	67.723	69.969	-0.22245					117	54	4	0	0	0	0.43637	4	8054	8042;8054;8066;8077		92.191	17.674	1	1187400			17266	6848	12044	12068	19392;19393;19394;19395	19393					0.08230385376668892
FPNLRVALP	9	Unmodified	_FPNLRVALP_					0	0	0		ENST00000301732.9_1_16:2379695-2379815:-|nuORF	ENST00000301732.9_1_16:2379695-2379815:-|nuORF	ENST00000301732.9_1_16:2379695-2379815:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	513.808377	1025.6022	-0.41782	-0.00021468	1.0703	0.00054993	0.65249	0.00033526	513.8085236249909	67.192	0.57255	67.216	66.898	67.471	0.023911					23	13	2	0	0	0	0.024262	1	7955	7955		47.916	18.074	1	295430			17267	11934	12045	12069	19396	19396					0.0904234343945518
FPPALILLSDM	11	Unmodified	_FPPALILLSDM_					0	0	0		ENST00000450633.6_1_3:127291966-127292347:-|nuORF	ENST00000450633.6_1_3:127291966-127292347:-|nuORF	ENST00000450633.6_1_3:127291966-127292347:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.8370361328125	2	608.835942	1215.65733	-1.0376	-0.00063172	2.6447	0.0016102	1.6071	0.00097847	608.8374403487405	109.72	0.52835	109.72	109.52	110.05	0.0059204					63	25	4	0	0	0	1.0651	1	13852	13852		20.947	0.95016	1	5115400			17268	14512	12046	12070	19397	19397					0.05812969125054224
FPPCVMTYNL	10	Unmodified	_FPPCVMTYNL_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.3030395507812	2	592.77757	1183.54059	-0.49063	-0.00029083	-0.29072	-0.00017233	-0.78135	-0.00046316	592.7773574193878	81.364	1.0837	81.171	80.76	81.844	-0.19334					68	25	4	0	0	0	0.03519	1	9725	9725		27.882	3.6795	1	594960	+		17269	25943	12047	12071	19398	19398					-0.043840923663310605
FPPEPSMKI	9	Unmodified	_FPPEPSMKI_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2971801757812	2	523.272978	1044.5314	-0.5534	-0.00028958	0.69455	0.00036344	0.14115	7.3859E-05	523.2741139116838	51.998	0.27418	51.851	51.676	51.95	-0.14735					10	7	2	0	0	0	0.024292	1	5498	5498		49.442	0	1	110620			17270	5856	12048	12072	19399	19399					0.01091882339642325
FPPGLVSNTM	10	Oxidation (M)	_FPPGLVSNTM(Oxidation (M))_		FPPGLVSNTM(1)		FPPGLVSNTM(74)	0	0	1			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.767333984375	2	539.765517	1077.51648	-0.97499	-0.00052627	3.8581	0.0020824	2.8831	0.0015562	539.7676621521944	27.711	1.1787	27.698	27.352	28.531	-0.012983					78	29	4	0	0	0	0.62431	1	1520	1520		74.255	8.7897	1	13040000	+		17271	27290	12049	12073	19400	19400		809			-0.019176095283683026
FPPIKLRY	8	Unmodified	_FPPIKLRY_					0	0	0			REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2927856445312	2	517.313295	1032.61204	-0.48556	-0.00025119	2.6257	0.0013583	2.1402	0.0011071	517.3152968557455	32.008	0.24148	32.02	31.863	32.104	0.011799					6	5	2	0	0	0	0.027866	1	2167	2167		20.482	0	1	36276	+		17272	35175	12050	12074	19401	19401					0.09703531444847613
FPPKDDHTL	9	Unmodified	_FPPKDDHTL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7658081054688	2	535.269281	1068.52401	-0.67878	-0.00036333	-2.4793	-0.0013271	-3.1581	-0.0016904	535.2670102069354	49.115	3.9204	48.962	47.231	51.151	-0.15277					190	112	3	0	0	0	0.26966	1	5075	5075		79.713	10.866	1	2736600			17273	18271	12051	12075	19402	19402					-0.007511339364327796
FPPKPSID	8	Unmodified	_FPPKPSID_					0	0	0			REV__ENST00000554467.5_1_12:57623561-57624966:+|nuORF	REV__ENST00000554467.5_1_12:57623561-57624966:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.779052734375	2	450.744911	899.475269	0.47691	0.00021496	3.3418	0.0015063	3.8187	0.0017213	450.74644481519397	67.989	0.87598	67.989	67.606	68.482	0					53	22	4	0	0	0	0.027866	1	8105	8105		38.806	0	1	1076000	+		17274	34987	12052	12076	19403	19403					0.0215099749447063
FPPLPTLSL	9	Unmodified	_FPPLPTLSL_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|102|2|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|102|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7806701660156	2	492.791861	983.569169	0.062144	3.0624E-05	0.90435	0.00044566	0.96649	0.00047628	492.7912591065667	77.997	0.44899	77.997	77.833	78.282	0					13	10	2	0	0	0	0.024325	1	9650	9650		31.955	0	1	268180	+		17275	36280	12053	12077	19404	19404					0.07672716596766804
FPPLSTLDP	9	Unmodified	_FPPLSTLDP_					0	0	0			REV__ENST00000534358.5_2_11:118395151-118395382:+|nuORF	REV__ENST00000534358.5_2_11:118395151-118395382:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.288330078125	2	493.7633	985.512048	0.45649	0.0002254	-1.7648	-0.00087141	-1.3083	-0.00064601	493.76128421421123	58.805	0.37332	58.618	58.348	58.721	-0.18705					11	9	2	0	0	0	0.022484	1	6629	6629		60.972	13.056	1	82398	+		17276	34637	12054	12078	19405	19405					0.0187124932037932
FPPPPDDDIY	10	Unmodified	_FPPPPDDDIY_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.29052734375	2	588.266404	1174.51826	-0.11479	-6.7529E-05	-0.1473	-8.665E-05	-0.26209	-0.00015418	588.2661268440062	85.685	0.85583	85.49	85.215	86.071	-0.19508					40	19	3	0	0	0	0.03519	1	10342	10342		73.975	17.254	1	348750			17277	1722	12055	12079	19406	19406					-0.06202277238753595
FPPPPYPLP	9	Unmodified	_FPPPPYPLP_					0	0	0			REV__ENST00000299964.3_1_11:114167011-114167053:+|nuORF	REV__ENST00000299964.3_1_11:114167011-114167053:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7530517578125	2	512.778754	1023.54295	-1.1469	-0.00058812	0.35894	0.00018406	-0.78799	-0.00040407	512.7791447189452	50.946	0.40677	51.033	50.82	51.227	0.087006					14	10	2	0	0	0	0.024389	1	5270	5270		39.021	14.819	1	116200	+		17278	30040	12056	12080	19407	19407					0.03212447425266873
FPPQKLIYL	9	Unmodified	_FPPQKLIYL_					0	0	0		ENSG00000157911|ENST00000447513|PEX10;nc|ENSG00000157911|O60683-2|PEX10	ENSG00000157911|ENST00000447513|PEX10	ENSG00000157911|ENST00000447513|PEX10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.814453125	2	559.83406	1117.65357	0.24366	0.00013641	-1.3085	-0.00073256	-1.0649	-0.00059615	559.8332281544189	81.257	0.83139	81.063	80.76	81.591	-0.19334					44	19	3	0	0	0	0.024262	1	9791	9791		57.811	0	1	374590			17279	6630	12057	12081	19408	19408					0.09944667413492425
FPPSLPHLC	9	Unmodified	_FPPSLPHLC_					0	0	0		ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENST00000557627.1_1_14:20869071-20871634:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.760498046875	2	505.760038	1009.50552	0.38767	0.00019607	0.66627	0.00033697	1.0539	0.00053304	505.76042662558916	107.37	0.44624	107.21	106.88	107.32	-0.15771					38	16	3	0	0	0	0.85941	1	13325	13325		35.201	3.2459	1	279770			17280	16735	12058	12082	19409	19409					0.001150328880271445
FPPTTSSPVL	10	Unmodified	_FPPTTSSPVL_					0	0	0		ENST00000480655.5_1_20:34262894-34263203:-|nuORF	ENST00000480655.5_1_20:34262894-34263203:-|nuORF	ENST00000480655.5_1_20:34262894-34263203:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3038940429688	2	523.281857	1044.54916	0.18297	9.5743E-05	-0.50484	-0.00026417	-0.32187	-0.00016843	523.2814020844783	90.417	0.87221	90.431	90.121	90.993	0.013443					31	20	2	0	0	0	0.03519	1	11335	11335		66.429	9.7082	1	395530			17281	15207	12059	12083	19410	19410					0.028669208661540324
FPPVCPQNI	9	Unmodified	_FPPVCPQNI_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2273254394531	2	507.757495	1013.50044	-0.72682	-0.00036905	-2.1973	-0.0011157	-2.9241	-0.0014847	507.7558587982911	30.697	0.25873	30.519	30.366	30.625	-0.17818					6	5	2	0	0	0	0.024487	1	1962	1962		31.955	5.2619	1	27247			17282	9851	12060	12084	19411	19411					-0.005772709746111104
FPPVKYAML	9	Unmodified	_FPPVKYAML_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2745361328125	2	533.293714	1064.57287	-0.40541	-0.0002162	1.6286	0.00086854	1.2232	0.00065234	533.2947054510853	78.282	1.277	78.028	77.743	79.02	-0.25471					52	29	3	0	0	0	0.024466	1	9365	9365		33.516	3.674	1	958120	+		17283	21526	12061	12085	19412	19412					0.04317063098960716
FPPVLFLK	8	Unmodified	_FPPVLFLK_					0	0	0		ENST00000360900.10_3_16:86564750-86564960:-|nuORF	ENST00000360900.10_3_16:86564750-86564960:-|nuORF	ENST00000360900.10_3_16:86564750-86564960:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.21710205078125	2	480.799489	959.584425	0.023409	1.1255E-05	-4.1702	-0.002005	-4.1468	-0.0019938	480.7973798962396	37.34	0.62749	37.131	36.844	37.472	-0.2092					32	15	3	0	0	0	0.027866	1	2953	2953		50.025	5.4935	1	528710			17284	12780	12062	12086	19413	19413					0.10301628184595302
FPPVPTRL	8	Unmodified	_FPPVPTRL_					0	0	0			REV__ENST00000300976.8_1_19:18780088-18780439:+|nuORF	REV__ENST00000300976.8_1_19:18780088-18780439:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7762756347656	2	463.776545	925.538538	-0.027944	-1.296E-05	0.3846	0.00017837	0.35665	0.00016541	463.77649224438414	73.805	2.076	73.533	73.05	75.126	-0.27126					84	51	2	0	0	0	0.81662	1	8990	8990		57.811	2.3071	1	4373800	+		17285	30050	12063	12087	19414	19414					0.07278983002368022
FPPWQKLIIP	10	Unmodified	_FPPWQKLIIP_					0	0	0		ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;ENSG00000164808|ENST00000297423|SPIDR;ENST00000521214.5_1_8:48191985-48612988:+|nuORF	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8695068359375	2	619.868434	1237.72232	0.19629	0.00012167	1.4718	0.00091231	1.6681	0.001034	619.8690521890022	104.69	0.53136	104.69	104.4	104.93	0.00096893					43	16	4	0	0	0	1.1237	1	13383	13383		23.042	1.3567	1	199580			17286	7323	12064	12088	19415	19415					0.11296331713219843
FPQFITDML	9	Unmodified	_FPQFITDML_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.311279296875	2	556.27826	1110.54197	0.22966	0.00012775	-1.6865	-0.00093817	-1.4569	-0.00081042	556.7766885519194	72.931	0.89098	72.65	72.303	73.194	-0.28124					45	21	3	0	0	0	0.024319	1	8819	8819		47.657	17.34	1	430590	+		17287	21973	12065	12089	19416	19416					-0.008881350059482429
FPQIWAVPQ	9	Unmodified	_FPQIWAVPQ_					0	0	0		ENST00000371410.4_2_X:119077536-119077716:-|nuORF	ENST00000371410.4_2_X:119077536-119077716:-|nuORF	ENST00000371410.4_2_X:119077536-119077716:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8200073242188	2	543.292559	1084.57057	-1.4214	-0.00077226	-3.4879	-0.0018949	-4.9093	-0.0026672	543.2905205115508	47.149	0.55915	47.209	46.995	47.554	0.059097					26	15	2	0	0	0	0.024457	1	4706	4706		29.15	1.2673	1	441470			17288	12994	12066	12090	19417	19417					0.031663506855238666
FPQLYHIVS	9	Unmodified	_FPQLYHIVS_					0	0	0			REV__ENST00000370920.7_1_1:71530480-71530570:-|nuORF	REV__ENST00000370920.7_1_1:71530480-71530570:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.3259887695312	2	552.297842	1102.58113	-1.1095	-0.00061279	-3.1093	-0.0017173	-4.2189	-0.0023301	552.2961847518691	53.931	0.65456	53.795	53.496	54.151	-0.13617					33	20	2	0	0	0	0.024457	1	5683	5683		37.159	19.794	1	604600	+		17289	31143	12067	12091	19418	19418					0.033943333399292897
FPQMFSDL	8	Unmodified	_FPQMFSDL_					0	0	0			REV__nc|ENSG00000176884|Q05586-2|GRIN1	REV__nc|ENSG00000176884|Q05586-2|GRIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.78875732421875	2	492.728403	983.442254	0.065177	3.2114E-05	-1.7688	-0.00087154	-1.7036	-0.00083943	492.72790524139685	77.98	0.3688	77.98	77.833	78.202	0					10	8	2	0	0	0	0.027866	1	9628	9628		44.117	34.646	1	90377	+		17290	27052	12068	12092	19419	19419					-0.05012952619870248
FPQQHCGHDH	10	Unmodified	_FPQQHCGHDH_					0	0	0			REV__nc|ENSG00000243566|Q9BT76|UPK3B	REV__nc|ENSG00000243566|Q9BT76|UPK3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	603.2953491210938	2	603.248889	1204.48322	-0.053787	-3.2447E-05	-1.7824	-0.0010752	-1.8362	-0.0011077	603.2474604821891	68.637	0.51738	68.395	68.149	68.666	-0.24278					26	12	3	0	0	0	0.03519	1	7925	7925		27.882	0	1	457890	+		17291	37161	12069	12093	19420	19420					-0.11083798527693034
FPQVAPQEAR	10	Unmodified	_FPQVAPQEAR_					0	0	0		ENST00000478241.6_2_12:56223574-56223930:+|nuORF	ENST00000478241.6_2_12:56223574-56223930:+|nuORF	ENST00000478241.6_2_12:56223574-56223930:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	572.2623291015625	2	571.80128	1141.58801	-0.27226	-0.00015568	2.7432	0.0015686	2.4709	0.0014129	572.3054850234493	42.929	0.28641	42.96	42.795	43.082	0.030823					12	7	2	0	0	0	0.03519	1	3947	3947		56.721	12.604	1	89825			17292	15136	12070	12094	19421	19421					0.022876462204976633
FPRAAASD	8	Unmodified	_FPRAAASD_					0	0	0			REV__ENST00000468722.1_1_1:52328041-52344287:-|nuORF	REV__ENST00000468722.1_1_1:52328041-52344287:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.70867919921875	2	417.70886	833.403166	1.0537	0.00044014	-0.92999	-0.00038846	0.12371	5.1675E-05	417.7080221269448	99.009	0.94334	98.884	98.328	99.272	-0.12459					41	23	3	0	0	0	1.0239	1	12276	12276		33.516	6.7195	1	140550	+		17293	20614	12071	12095	19422	19422					-0.02019916859251225
FPRAPILEL	9	Unmodified	_FPRAPILEL_					0	0	0			REV__ENSG00000120278|ENST00000696526|PLEKHG1	REV__ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2394409179688	2	528.316035	1054.61752	1.445	0.00076344	1.7575	0.00092854	3.2026	0.001692	528.3167239722181	63.383	0.87148	63.437	62.931	63.803	0.054104					33	22	3	0	0	0	0.024292	1	7353	7353		40.778	16.259	1	370800	+		17294	22522	12072	12096	19423	19423					0.09239210236660256
FPRDRVVV	8	Unmodified	_FPRDRVVV_					0	0	0			REV__nc|ENSG00000125775|Q9H190-3|SDCBP2	REV__nc|ENSG00000125775|Q9H190-3|SDCBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.76318359375	2	494.290351	986.566149	-0.50813	-0.00025116	-1.0061	-0.00049731	-1.5142	-0.00074847	494.2897568530555	74.281	1.0825	74.29	74.009	75.091	0.0096512					39	25	2	0	0	0	0.027866	1	9015	9015		47.916	17.412	1	192910	+		17295	22842	12073	12097	19424	19424					0.07232886262613647
FPRIFLARA	9	Unmodified	_FPRIFLARA_					0	0	0			REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2900390625	2	545.829643	1089.64473	0.14029	7.6575E-05	3.7632	0.0020541	3.9035	0.0021306	545.8329319080732	97.247	0.75626	97.247	97.058	97.815	-3.8147E-05					20	16	2	0	0	0	0.024262	1	12371	12371		47.916	5.4411	1	42939	+		17296	20050	12074	12098	19425	19425					0.10349738567697386
FPRIFLARA	9	Unmodified	_FPRIFLARA_					0	0	0			REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.829643	1089.64473	0.88985	0.00048571	5.2076	0.0028425	6.0974	0.0033282	545.8325218179996	97.578	0.66953	97.454	97.018	97.688	-0.12368	0.10336	0.00038134	NaN	47.916	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31628	+		17297	20050	12074	12098							0.10349738567697386
FPRIIKVL	8	Unmodified	_FPRIIKVL_					0	0	0		ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	ENSG00000176495|ENST00000641998|OR5AN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.329345703125	2	493.331488	984.648422	-0.49246	-0.00024294	-4.0796	-0.0020126	-4.572	-0.0022555	493.32946382246314	24.453	1.12	24.238	23.778	24.898	-0.2151					64	25	4	0	0	0	0.85409	1	1100	1100		54.765	6.8491	1	4942600			17298	8644	12075	12099	19426	19426					0.1554840834156721
FPRIVHGR	8	Unmodified	_FPRIVHGR_					0	0	0		nc|ENSG00000154134|Q96MS0-2|ROBO3;ENSG00000154134|ENST00000397801|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2835998535156	2	491.290685	980.566818	0.73434	0.00036077	-2.4172	-0.0011875	-1.6828	-0.00082675	491.28933226161735	58.769	1.026	58.769	58.418	59.444	0					35	27	2	0	0	0	0.027866	1	6640	6640		12.959	0	1	716850			17299	6385	12076	12100	19427	19427					0.07575725702315594
FPRKPYEG	8	Unmodified	_FPRKPYEG_					0	0	0		nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2623596191406	2	497.261259	992.507966	-0.96299	-0.00047886	4.1832	0.0020801	3.2202	0.0016013	497.2631239256717	55.892	1.6292	55.735	54.863	56.492	-0.15655					103	43	4	0	0	0	0.81662	1	6031	6031		57.811	2.3071	1	4499600			17300	3434	12077	12101	19428	19428					0.011412046173290946
FPRKPYEG	8	Unmodified	_FPRKPYEG_					0	0	0		nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2628173828125	2	497.261259	992.507966	-0.59944	-0.00029808	3.7068	0.0018432	3.1073	0.0015452	497.26295675594787	48.648	6.2116	48.373	45.762	51.974	-0.27598					392	167	4	0	0	0	0.74904	1	4800	4800		63.306	5.495	1	7013000			17301	3434	12077	12101	19429	19429					0.011412046173290946
FPRKPYEG	8	Unmodified	_FPRKPYEG_					0	0	0		nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2627868652344	2	497.261259	992.507966	0.0056123	2.7908E-06	3.1981	0.0015903	3.2037	0.0015931	497.26270370587906	55.931	1.5618	55.714	54.906	56.468	-0.21607					91	42	4	0	0	0	0.68535	1	6023	6023		68.485	5.1784	1	3583600			17302	3434	12077	12101	19430	19430					0.011412046173290946
FPRKPYEG	8	Unmodified	_FPRKPYEG_					0	0	0		nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	nc|ENSG00000115318|P58215-3|LOXL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2624206542969	2	497.261259	992.507966	-1.2848	-0.00063888	4.23	0.0021034	2.9453	0.0014646	497.2632221713858	55.94	1.6637	55.725	54.967	56.631	-0.21551					91	44	3	0	0	0	0.68535	1	6011	6011		68.485	5.1784	1	3439000			17303	3434	12077	12101	19431	19431					0.011412046173290946
FPRQPHVL	8	Unmodified	_FPRQPHVL_					0	0	0			REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2623596191406	2	497.285069	992.555585	-0.82939	-0.00041244	-1.8922	-0.00094094	-2.7215	-0.0013534	497.2839186277293	48.219	1.1781	48.122	47.705	48.883	-0.097553					44	31	2	0	0	0	0.027866	1	4840	4840		65.897	13.598	1	253100	+		17304	34204	12078	12102	19432	19432					0.05900903608187491
FPRQPHVL	8	Unmodified	_FPRQPHVL_					0	0	0			REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.285069	992.555585	-0.20436	-0.00010162	-0.45473	-0.00022613	-0.65908	-0.00032775	497.2846383305967	48.294	0.74437	48.294	47.875	48.619	0	0.059886	0.00049279	NaN	65.897	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337860	+		17305	34204	12078	12102							0.05900903608187491
FPRQPHVL	8	Unmodified	_FPRQPHVL_					0	0	0			REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.285069	992.555585	-0.58302	-0.00028993	-0.24454	-0.00012161	-0.82756	-0.00041153	497.28467516452076	48.451	0.68668	48.298	47.924	48.611	-0.15301	0.0632	0.00070183	NaN	65.897	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233170	+		17306	34204	12078	12102							0.05900903608187491
FPRQPHVL	8	Unmodified	_FPRQPHVL_					0	0	0			REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	REV__ENST00000515676.5_1_5:10250943-10251000:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.285069	992.555585	-0.32429	-0.00016127	-1.108	-0.00055101	-1.4323	-0.00071228	497.28429653890873	48.106	0.68364	48.173	47.87	48.553	0.066795	-0.061569	-0.00015698	NaN	65.897	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266400	+		17307	34204	12078	12102							0.05900903608187491
FPRQRTLPPSA	11	Unmodified	_FPRQRTLPPSA_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|52|2|anti-sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|52|2|anti-sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|52|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.16217041015625	3	423.906928	1268.69895	0.078835	3.3419E-05	-1.9633	-0.00083224	-1.8844	-0.00079882	424.2410531575709	31.577	0.66232	31.336	31.073	31.735	-0.24109					22	16	2	0	0	0	0.024809	1	2077	2077		17.167	3.0807	1	66880			17308	37992	12079	12103	19433	19433					0.07535285928611302
FPRREREGMP	10	Unmodified	_FPRREREGMP_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	638.3231811523438	2	637.824763	1273.63497	0.83587	0.00053314	-1.3485	-0.00086009	-0.5126	-0.00032695	637.8237017163078	98.947	0.35454	98.822	98.635	98.99	-0.12458					15	8	2	0	0	0	1.1265	1	12283	12283		24.519	0	1	48321			17309	4796	12080	12104	19434	19434					0.009101825000016106
FPRREREGMP	10	Unmodified	_FPRREREGMP_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	637.824763	1273.63497	0.804	0.00051281	-1.1442	-0.00072982	-0.34023	-0.00021701	637.8236394823905	99.178	0.80086	99.178	98.734	99.535	0	0.19449	-0.0002441	NaN	24.519	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84022			17310	4796	12080	12104							0.009101825000016106
FPRREREGMP	10	Unmodified	_FPRREREGMP_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	637.824763	1273.63497	0.4484	0.000286	-1.0952	-0.00069853	-0.64677	-0.00041253	637.8241205705694	99.215	0.6666	99.211	98.767	99.434	-0.0038834	0.22752	-0.00018152	NaN	24.519	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71062			17311	4796	12080	12104							0.009101825000016106
FPRREREGMP	10	Unmodified	_FPRREREGMP_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	637.824763	1273.63497	-0.58826	-0.00037521	0.3943	0.0002515	-0.19396	-0.00012371	637.8248202893284	98.984	0.53712	98.849	98.592	99.129	-0.13526	-0.13475	0.0017185	NaN	24.519	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57916			17312	4796	12080	12104							0.009101825000016106
FPRREREGMP	10	Unmodified	_FPRREREGMP_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	637.824763	1273.63497	-0.38212	-0.00024372	-0.67606	-0.00043121	-1.0582	-0.00067493	637.8248402654197	99.003	0.40242	98.834	98.671	99.074	-0.16862	-0.14947	0.00035313	NaN	24.519	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27674			17313	4796	12080	12104							0.009101825000016106
FPRSPNPL	8	Unmodified	_FPRSPNPL_					0	0	0		ENST00000368966.9_3_6:109615628-109650288:+|nuORF	ENST00000368966.9_3_6:109615628-109650288:+|nuORF	ENST00000368966.9_3_6:109615628-109650288:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.3028564453125	2	464.255977	926.497401	-0.43328	-0.00020115	3.9699	0.0018431	3.5366	0.0016419	464.25762883246625	35.309	0.8187	35.097	34.766	35.584	-0.21246					50	20	3	0	0	0	0.027866	1	2640	2640		79.451	10.966	1	1420900			17314	12910	12081	12105	19435	19435					0.031212219629082938
FPRTIATKEG	10	Unmodified	_FPRTIATKEG_					0	0	0			REV__ENST00000424010.1_1_2:223185461-223186236:+|nuORF	REV__ENST00000424010.1_1_2:223185461-223186236:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7827758789062	2	560.31148	1118.60841	-0.29142	-0.00016329	3.2072	0.001797	2.9158	0.0016338	560.3130734090377	31.469	0.65454	31.284	30.865	31.52	-0.18503					29	16	2	0	0	0	0.03519	1	2038	2038		49.442	21.559	1	75802	+		17315	32228	12082	12106	19436	19436					0.053848168803369845
FPRTPQPTLSH	11	Unmodified	_FPRTPQPTLSH_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.26519775390625	3	427.56305	1279.66732	0.32859	0.00014049	-0.31603	-0.00013512	0.012562	5.371E-06	427.5634391135012	53.86	0.26868	53.958	53.808	54.077	0.098015					8	7	2	0	0	0	0.024747	1	5794	5794		21.78	9.5737	1	111570	+		17316	23654	12083	12107	19437	19437					0.03867293174675979
FPRVLNSI	8	Unmodified	_FPRVLNSI_					0	0	0			REV__ENSG00000100813|ENST00000605057|ACIN1	REV__ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.2795715332031	2	473.279452	944.544351	0.13632	6.4516E-05	0.0066956	3.1689E-06	0.14301	6.7685E-05	473.2793867923848	58.429	0.52192	58.238	58.056	58.578	-0.19018					26	12	3	0	0	0	0.74904	1	6427	6427		63.306	5.495	1	1486000	+		17317	21153	12084	12108	19438	19438					0.06986081514037323
FPRVLNSI	8	Unmodified	_FPRVLNSI_					0	0	0			REV__ENSG00000100813|ENST00000605057|ACIN1	REV__ENSG00000100813|ENST00000605057|ACIN1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	473.279452	944.544351	0.13632	6.4516E-05	0.0066956	3.1689E-06	0.14301	6.7685E-05	473.2793867923848	58.429	0.52192	58.238	58.056	58.578	-0.19018	-0.058667	0.00020803	NaN	63.306	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1486000	+		17318	21153	12084	12108							0.06986081514037323
FPRVLNSI	8	Unmodified	_FPRVLNSI_					0	0	0			REV__ENSG00000100813|ENST00000605057|ACIN1	REV__ENSG00000100813|ENST00000605057|ACIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.279452	944.544351	0.50539	0.00023919	-0.43893	-0.00020774	0.06646	3.1454E-05	473.2790968149403	58.597	0.68966	58.356	58.086	58.776	-0.24165	0.058667	-0.00021378	NaN	63.306	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1391000	+		17319	21153	12084	12108							0.06986081514037323
FPRWSRSSV	9	Unmodified	_FPRWSRSSV_					0	0	0			REV__ENST00000424197.5_1_7:44283083-44294198:-|nuORF	REV__ENST00000424197.5_1_7:44283083-44294198:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.271240234375	2	561.296165	1120.57778	-0.54182	-0.00030412	0.80044	0.00044928	0.25862	0.00014516	561.2965956022388	27.981	0.72075	27.829	27.482	28.203	-0.15195					27	17	2	0	0	0	0.024477	1	1518	1518		20.947	3.4789	1	319070	+		17320	32230	12085	12109	19439	19439					0.022310832859375296
FPRWSRSSV	9	Unmodified	_FPRWSRSSV_					0	0	0			REV__ENST00000424197.5_1_7:44283083-44294198:-|nuORF	REV__ENST00000424197.5_1_7:44283083-44294198:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	561.296165	1120.57778	-0.63369	-0.00035569	-0.3746	-0.00021026	-1.0083	-0.00056595	561.2956883185777	28.066	0.70496	27.821	27.376	28.081	-0.24524	0.028717	-0.00069422	NaN	20.947	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196650	+		17321	32230	12085	12109							0.022310832859375296
FPRWSRSSV	9	Unmodified	_FPRWSRSSV_					0	0	0			REV__ENST00000424197.5_1_7:44283083-44294198:-|nuORF	REV__ENST00000424197.5_1_7:44283083-44294198:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.296165	1120.57778	-0.807	-0.00045297	0.28981	0.00016267	-0.51719	-0.0002903	561.2958868044295	27.896	0.61034	27.728	27.317	27.927	-0.16816	-0.064966	5.1636E-05	NaN	20.947	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181910	+		17322	32230	12085	12109							0.022310832859375296
FPRYLKKI	8	Unmodified	_FPRYLKKI_					0	0	0			REV__ENST00000488504.5_1_22:50695267-50699938:-|nuORF	REV__ENST00000488504.5_1_22:50695267-50699938:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7901611328125	2	532.834394	1063.65424	-0.86284	-0.00045975	3.8565	0.0020549	2.9937	0.0015951	532.8361754701596	56.371	0.80171	56.21	55.772	56.574	-0.16149					51	21	3	0	0	0	0.027866	1	6238	6238		25.45	4.9683	1	486810	+		17323	28009	12086	12110	19440	19440					0.1249550685322447
FPSHDQPNI	9	Unmodified	_FPSHDQPNI_					0	0	0		ENST00000371117.7_1_6:51750749-51768419:-|nuORF	ENST00000371117.7_1_6:51750749-51768419:-|nuORF	ENST00000371117.7_1_6:51750749-51768419:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3118896484375	2	527.751256	1053.48796	0.3636	0.00019189	-3.6055	-0.0019028	-3.2419	-0.0017109	528.2532543362099	36.963	0.51035	36.963	36.685	37.195	0					19	11	2	0	0	0	0.024427	1	2984	2984		34.173	0	1	180980			17324	12987	12087	12111	19441	19441					-0.03664591113283677
FPSLVYNL	8	Unmodified	_FPSLVYNL_					0	0	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7607116699219	2	476.760561	951.506569	2.3019	0.0010974	-1.5177	-0.0007236	0.78412	0.00037384	476.75966716195984	18.996	0.54328	18.996	18.774	19.317	0					23	10	3	0	0	0	0.81662	1	354	354		57.811	6.4758	1	252300	+		17325	19854	12088	12112	19442	19442					0.028875705285713593
FPSPYLGSL	9	Unmodified	_FPSPYLGSL_					0	0	0			REV__ENSG00000105520|ENST00000688289|PLPPR2	REV__ENSG00000105520|ENST00000688289|PLPPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.3369445800781	2	490.758018	979.501483	1.0729	0.00052655	1.4788	0.00072574	2.5517	0.0012523	490.75859474944855	82.346	0.71452	82.236	81.881	82.596	-0.11006					32	16	3	0	0	0	0.024323	1	10243	10243		53.351	8.8204	1	497150	+		17326	21534	12089	12113	19443	19443					0.010912666659464776
FPSQSFPGEL	10	Unmodified	_FPSQSFPGEL_					0	0	0		ENST00000476504.5_1_10:38299638-38306367:+|nuORF	ENST00000476504.5_1_10:38299638-38306367:+|nuORF	ENST00000476504.5_1_10:38299638-38306367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.7666625976562	2	554.769114	1107.52368	-1.0981	-0.00060917	-3.2993	-0.0018304	-4.3974	-0.0024395	554.7673340804547	53.384	0.80532	53.236	52.797	53.602	-0.14723					44	21	3	0	0	0	0.94316	1	5746	5746		51.193	1.7511	1	4192400			17327	15086	12090	12114	19444	19444					-0.025785536562807465
FPSRTQSQV	9	Unmodified	_FPSRTQSQV_					0	0	0			REV__ENST00000502255.5_1_4:3949726-3952893:-|nuORF	REV__ENST00000502255.5_1_4:3949726-3952893:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	525.2722778320312	2	525.272355	1048.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.368	1	39.269	38.769	39.769	-0.098755								0	0	0	0.05455	1	3363	3363		107.01	8.3781	1		+		17328	33921	12091	12115	19445	19445					0.00783384295095857
FPSRTQSQV	9	Unmodified	_FPSRTQSQV_					0	0	0			REV__ENST00000502255.5_1_4:3949726-3952893:-|nuORF	REV__ENST00000502255.5_1_4:3949726-3952893:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2719116210938	2	525.272355	1048.53016	-0.75464	-0.00039639	-0.029846	-1.5677E-05	-0.78448	-0.00041207	525.2727365115217	39.498	1.4384	39.521	38.688	40.126	0.023727					61	39	2	0	0	0	0.30449	1	3325	3325		75.043	0.78827	1	7867400	+		17329	33921	12091	12115	19446	19446					0.00783384295095857
FPSRVPSVI	9	Unmodified	_FPSRVPSVI_					0	0	0		ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2861633300781	2	501.292559	1000.57057	-0.57758	-0.00028954	0.2514	0.00012602	-0.32618	-0.00016351	501.2909213454438	45.439	0.74841	45.291	44.866	45.614	-0.1488					33	21	3	0	0	0	0.023837	1	4348	4348		64.207	12.872	1	429710			17330	13839	12092	12116	19447	19447					0.07030350685522535
FPSSPTGPAQP	11	Unmodified	_FPSSPTGPAQP_					0	0	0			REV__ENSG00000105321|ENST00000221922|CCDC9	REV__ENSG00000105321|ENST00000221922|CCDC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.28076171875	2	543.266739	1084.51892	-0.54052	-0.00029365	0.48866	0.00026547	-0.051862	-2.8175E-05	543.266839362416	62.305	0.23405	62.091	61.972	62.206	-0.21375					11	5	3	0	0	0	0.024814	1	7017	7017		70.816	1.1886	1	269310	+		17331	19397	12093	12117	19448	19448					-0.019954377990416106
FPSSSFPTP	9	Unmodified	_FPSSSFPTP_					0	0	0			REV__ENST00000377604.7_1_X:47004520-47004670:+|nuORF	REV__ENST00000377604.7_1_X:47004520-47004670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.287841796875	2	483.732	965.449448	-0.89769	-0.00043424	1.6512	0.00079873	0.7535	0.00036449	483.73261958206933	25.377	0.64471	25.343	25.121	25.765	-0.034397					26	15	2	0	0	0	0.024436	1	1155	1155		38.806	0	1	272990	+		17332	31377	12094	12118	19449	19449					-0.034658967477980696
FPSVLILSP	9	Unmodified	_FPSVLILSP_					0	0	0		ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.8057861328125	2	486.791861	971.569169	-0.89412	-0.00043525	-2.5655	-0.0012488	-3.4596	-0.0016841	486.79043263491326	33.981	0.63934	34.031	33.765	34.404	0.050255					37	15	3	0	0	0	0.024354	1	2497	2497		38.806	12.01	1	382220			17333	11684	12095	12119	19450	19450					0.08224716596760118
FPSVLILSP	9	Unmodified	_FPSVLILSP_					0	0	0		ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.791861	971.569169	-0.14677	-7.1444E-05	-8.4222	-0.0040999	-8.569	-0.0041713	486.79032423404857	34.108	0.15707	33.884	33.803	33.96	-0.22412	-0.11463	-0.0037728	NaN	38.806	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34882			17334	11684	12095	12119							0.08224716596760118
FPTAEQFRRM	10	Oxidation (M)	_FPTAEQFRRM(Oxidation (M))_		FPTAEQFRRM(1)		FPTAEQFRRM(50)	0	0	1		ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:980866-997838:+|nuORF;nc|ENSG00000127415|P35475-2|IDUA	ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.5484924316406	3	433.548523	1297.62374	-0.91294	-0.0003958	0.31669	0.0001373	-0.59625	-0.0002585	433.54860875533956	24.712	3.8546	24.665	23.281	27.136	-0.047146					196	91	4	0	0	0	0.96069	1	1061	1061		50.034	11.319	1	1414000			17335	4242	12096	12120	19451	19451		165			-0.013166395941425435
FPTEFIVE	8	Unmodified	_FPTEFIVE_					0	0	0		ITM2A|p.N252T|1|0.08|ENSG00000078596|chrX:79361126-79361126|T/G|missense_variant	ITM2A|p.N252T|1|0.08|ENSG00000078596|chrX:79361126-79361126|T/G|missense_variant	ITM2A|p.N252T|1|0.08|ENSG00000078596|chrX:79361126-79361126|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2713623046875	2	491.250026	980.485499	-0.071264	-3.5009E-05	-4.1083	-0.0020182	-4.1796	-0.0020532	491.2479453817252	41.451	1.3884	41.328	40.906	42.294	-0.12317					77	39	3	0	0	0	0.027866	1	3736	3736		50.025	12.865	1	477210			17336	17778	12097	12121	19452	19452					-0.005524395709471719
FPTIIVWL	8	Unmodified	_FPTIIVWL_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2870178222656	2	494.796946	987.57934	0.52918	0.00026184	-3.7331	-0.0018471	-3.2039	-0.0015853	494.7947382706182	67.788	0.62568	67.532	67.236	67.862	-0.25516					20	14	2	0	0	0	0.027866	1	7784	7784		42.474	10.945	1	222890			17337	423	12098	12122	19453	19453					0.08505324321993157
FPTLGPFGGNL	11	Unmodified	_FPTLGPFGGNL_					0	0	0			REV__ENST00000398832.2_1_17:30469273-30469582:-|nuORF	REV__ENST00000398832.2_1_17:30469273-30469582:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.814453125	2	560.295299	1118.57605	0.24492	0.00013723	-1.1348	-0.0006358	-0.88984	-0.00049857	560.2946203077735	81.223	0.41237	81.03	80.882	81.295	-0.19334					17	9	2	0	0	0	0.024351	1	9791	9791		60.118	14.146	1	105310	+		17338	31811	12099	12123	19454	19454					0.02150029477343196
FPTLLRNI	8	Unmodified	_FPTLLRNI_					0	0	0		ENST00000256412.8_1_8:24241812-24241986:+|nuORF	ENST00000256412.8_1_8:24241812-24241986:+|nuORF	ENST00000256412.8_1_8:24241812-24241986:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2936096191406	2	487.295102	972.575651	-1.0283	-0.00050109	-2.9893	-0.0014567	-4.0176	-0.0019578	487.2935230080693	90.04	1.2078	89.877	89.429	90.637	-0.16245					81	28	4	0	0	0	1.0009	1	11013	11013		37.159	1.5408	1	2703700			17339	11395	12100	12124	19455	19455					0.08826654548136048
FPTLQAILAQ	10	Unmodified	_FPTLQAILAQ_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.302734375	2	551.318774	1100.623	1.0447	0.00057595	-1.6923	-0.000933	-0.64762	-0.00035705	551.3176321805346	97.655	0.53393	97.531	97.198	97.732	-0.12368					13	11	2	0	0	0	0.03519	1	12075	12075		36.447	0	1	39510			17340	1397	12101	12125	19456	19456					0.07670889028440797
FPTMIVALGE	10	Unmodified	_FPTMIVALGE_					0	0	0			REV__ENSG00000173679|ENST00000309623|OR1L1	REV__ENSG00000173679|ENST00000309623|OR1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.295166015625	2	539.286085	1076.55762	-0.13809	-7.4473E-05	-0.89211	-0.0004811	-1.0302	-0.00055558	539.7891645734478	81.172	0.16467	80.94	80.853	81.018	-0.23238					5	3	2	0	0	0	0.03519	1	9730	9730		20.947	0	1	35234	+		17341	26797	12102	12126	19457	19457					0.022401515111141634
FPTRLLSPM	9	Unmodified	_FPTRLLSPM_					0	0	0		ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000511669.1_1_4:74904005-74904475:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3092651367188	2	531.294245	1060.57394	-0.70137	-0.00037263	-3.6784	-0.0019543	-4.3798	-0.002327	531.2921175505943	38.134	0.16115	37.955	37.809	37.971	-0.17929					5	4	2	0	0	0	0.024447	1	3119	3119		40.778	0	1	73952			17342	15843	12103	12127	19458	19458					0.046072774678577844
FPTSATSSPAL	11	Unmodified	_FPTSATSSPAL_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7925415039062	2	539.774396	1077.53424	-0.66617	-0.00035958	2.6991	0.0014569	2.0329	0.0010973	539.7758810119024	78.261	0.16003	78.261	78.122	78.282	0					7	3	3	0	0	0	0.024776	1	9680	9680		9.7057	0	1	512990			17343	1967	12104	12128	19459	19459					-0.001425710018565951
FPTSSVQNP	9	Unmodified	_FPTSSVQNP_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7775573730469	2	488.740357	975.46616	-0.15987	-7.8134E-05	2.8005	0.0013687	2.6406	0.0012906	488.7416170202566	52.001	1.3975	51.882	51.082	52.48	-0.11876					52	36	2	0	0	0	0.02435	1	5468	5468		51.335	6.9583	1	183410			17344	9904	12105	12129	19460	19460					-0.022553958618573233
FPTVETGISV	10	Unmodified	_FPTVETGISV_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7946166992188	2	525.279315	1048.54408	-0.83753	-0.00043994	-2.0941	-0.0011	-2.9317	-0.00154	525.2780408686073	36.529	0.8947	36.529	36.263	37.158	0					49	23	3	0	0	0	0.03519	1	2865	2865		29.15	10.825	1	688570	+		17345	20649	12106	12130	19461	19461					0.021746170035157775
FPVAFVVGAV	10	Unmodified	_FPVAFVVGAV_					0	0	0		ENSG00000163866|ENST00000521580|SMIM12	ENSG00000163866|ENST00000521580|SMIM12	ENSG00000163866|ENST00000521580|SMIM12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.76617431640625	2	503.292028	1004.5695	0.66599	0.00033519	-4.4375	-0.0022334	-3.7715	-0.0018982	503.28939204704204	58.959	0.58068	58.959	58.714	59.295	0					24	15	2	0	0	0	0.03519	1	6670	6670		19.36	0	1	1173100			17346	7159	12107	12131	19462	19462					0.06740136316614098
FPVALKKHG	9	Unmodified	_FPVALKKHG_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A;ZC2HC1A|p.T25K|1|0.2|ENSG00000104427|chr8:78675844-78675844|C/A|missense_variant;ENST00000521873.1_1_8:79578383-79590923:+|nuORF	ENSG00000104427|ENST00000263849|ZC2HC1A;ENST00000521873.1_1_8:79578383-79590923:+|nuORF	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8031005859375	2	498.803094	995.591636	-0.048509	-2.4196E-05	1.2296	0.00061332	1.1811	0.00058913	498.80359687571143	52.78	1.1183	52.653	52.353	53.471	-0.12705					100	28	5	0	0	0	0.78069	1	5512	5512		40.573	5.3719	1	22958000			17347	2571;16015	12108	12132	19463	19463					0.09366360785043071
FPVFCIFF	8	Unmodified	_FPVFCIFF_					0	0	0			REV__ENSG00000169313|ENST00000302632|P2RY12	REV__ENSG00000169313|ENST00000302632|P2RY12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.27392578125	2	510.2566	1018.49865	-1.3368	-0.00068214	-3.5435	-0.0018081	-4.8804	-0.0024902	510.2562792140347	90.484	0.87011	90.484	89.975	90.845	0					35	20	3	0	0	0	0.027866	1	11456	11456		24.504	0	1	151490	+		17348	26353	12109	12133	19464	19464					-0.009862799925599575
FPVFCIFF	8	Carbamidomethyl (C)	_FPVFC(Carbamidomethyl (C))IFF_	FPVFC(1)IFF		FPVFC(44)IFF		0	1	0			REV__ENSG00000169313|ENST00000302632|P2RY12	REV__ENSG00000169313|ENST00000302632|P2RY12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8030395507812	2	538.767332	1075.52011	-0.83147	-0.00044797	-1.4479	-0.00078008	-2.2794	-0.0012281	538.7667072772404	94.037	0.3996	94.037	93.75	94.15	-0.00023651					13	9	2	0	0	0	0.027866	1	11885	11885		43.626	10.133	1	53512	+		17349	26353	12109	12134	19465	19465	349				-0.014628949638563427
FPVFGWLTG	9	Unmodified	_FPVFGWLTG_					0	0	0			REV__ENSG00000129636|ENST00000320640|ITFG1	REV__ENSG00000129636|ENST00000320640|ITFG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.27197265625	2	512.268553	1022.52255	0.51992	0.00026634	4.2973	0.0022014	4.8173	0.0024677	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	0.98128	1	13624	13624		24.203	1.6231	1	6752000	+		17350	23054	12110	12135	19466	19466					0.012192767654710224
FPVGFIKGGI	10	Unmodified	_FPVGFIKGGI_					0	0	0			REV__nc|ENSG00000285077|Q3KRB8|ARHGAP11B	REV__nc|ENSG00000285077|Q3KRB8|ARHGAP11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.274658203125	2	517.805303	1033.59605	-0.53819	-0.00027868	4.1217	0.0021342	3.5835	0.0018555	517.8072422481766	45.627	0.90947	45.627	45.181	46.09	0					58	26	3	0	0	0	0.03519	1	4430	4430		55.504	38.139	1	817740	+		17351	28491	12111	12136	19467	19467					0.08059825207942595
FPVKPVFGAI	10	Unmodified	_FPVKPVFGAI_					0	0	0		ENST00000237937.7_1_9:74970312-74970396:-|nuORF	ENST00000237937.7_1_9:74970312-74970396:-|nuORF	ENST00000237937.7_1_9:74970312-74970396:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7972412109375	2	537.820953	1073.62735	-0.90974	-0.00048928	-0.85284	-0.00045868	-1.7626	-0.00094796	537.8193807418816	76.357	0.47523	76.128	75.927	76.402	-0.22843					20	11	3	0	0	0	0.03519	1	9348	9348		82.305	21.333	1	197770			17352	11265	12112	12137	19468	19468					0.09348398242059375
FPVKPVFGAI	10	Unmodified	_FPVKPVFGAI_					0	0	0		ENST00000237937.7_1_9:74970312-74970396:-|nuORF	ENST00000237937.7_1_9:74970312-74970396:-|nuORF	ENST00000237937.7_1_9:74970312-74970396:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7493896484375	2	537.820953	1073.62735	-0.37577	-0.0002021	-2.6845	-0.0014438	-3.0603	-0.0016459	537.819118829493	76.187	0.47362	76.199	76.015	76.488	0.011642					15	11	2	0	0	0	0.03519	1	9289	9289		79.451	8.1553	1	212030			17353	11265	12112	12137	19469	19469					0.09348398242059375
FPVLNVPIF	9	Unmodified	_FPVLNVPIF_					0	0	0		ENST00000469532.1_1_22:37628528-37640188:-|nuORF	ENST00000469532.1_1_22:37628528-37640188:-|nuORF	ENST00000469532.1_1_22:37628528-37640188:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7709350585938	2	523.307678	1044.6008	0.32867	0.000172	-4.4161	-0.002311	-4.0875	-0.002139	523.3054021724842	72.938	0.69617	72.657	72.303	72.999	-0.28124					56	16	4	0	0	0	0.024325	1	8827	8827		40.573	0	1	987320			17354	14906	12113	12138	19470	19470					0.08028709350696772
FPVNHGAS	8	Unmodified	_FPVNHGAS_					0	0	0		ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1;ENST00000510566.1_1_4:41263775-41266241:+|nuORF	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.7615051269531	2	414.703577	827.392602	0.21277	8.8234E-05	0.21605	8.9599E-05	0.42882	0.00017783	414.7041044025217	87.861	0.1171	87.725	87.642	87.76	-0.13613					4	2	2	0	0	0	0.027866	1	10701	10701		37.159	7.3176	1	19095			17355	6399	12114	12139	19471	19471					-0.027998995136613303
FPVQATINL	9	Unmodified	_FPVQATINL_					0	0	0		nc|ENSG00000147223|Q0D2K3-2|RIPPLY1;ENSG00000147223|ENST00000276173|RIPPLY1	nc|ENSG00000147223|Q0D2K3-2|RIPPLY1	nc|ENSG00000147223|Q0D2K3-2|RIPPLY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7804870605469	2	501.784567	1001.55458	0.4657	0.00023368	-0.93058	-0.00046695	-0.46489	-0.00023327	501.78406387204456	71.92	1.392	71.92	71.68	73.072	0					82	34	3	0	0	0	0.15366	1	8712	8712		98.629	0	1	20308000			17356	5947	12115	12140	19472	19472					0.05386644448606148
FPVQHFGKT	9	Unmodified	_FPVQHFGKT_					0	0	0			REV__nc|ENSG00000172053|P47897-2|QARS1	REV__nc|ENSG00000172053|P47897-2|QARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.268310546875	2	530.782359	1059.55016	0.012524	6.6476E-06	4.4131	0.0023424	4.4256	0.002349	531.2858043547657	53.137	0.73461	53.01	52.632	53.366	-0.12705					38	18	3	0	0	0	0.024506	1	5546	5546		16.473	5.6076	1	298240	+		17357	26630	12116	12141	19473	19473					0.022771800257032737
FPVRQGRAD	9	Unmodified	_FPVRQGRAD_					0	0	0			REV__ENSG00000158122|ENST00000375234|PRXL2C	REV__ENSG00000158122|ENST00000375234|PRXL2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.29736328125	2	523.280515	1044.54648	-1.0918	-0.00057129	0.78727	0.00041196	-0.30448	-0.00015933	523.2812860450425	52.423	0.37206	52.154	51.944	52.316	-0.26903					16	9	2	0	0	0	0.024405	1	5407	5407		35.618	8.571	1	373060	+		17358	25176	12117	12142	19474	19474					0.02598510251868902
FPVSVIILSY	10	Unmodified	_FPVSVIILSY_					0	0	0		ENSG00000171180|ENST00000641868|OR2M4	ENSG00000171180|ENST00000641868|OR2M4	ENSG00000171180|ENST00000641868|OR2M4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2964477539062	2	569.33135	1136.64815	-0.76284	-0.00043431	-2.9224	-0.0016638	-3.6853	-0.0020981	569.3295295007443	61.247	0.53743	61.071	60.793	61.33	-0.1761					31	12	3	0	0	0	0.03519	1	6859	6859		25.574	0	1	688610			17359	8124	12118	12143	19475	19475					0.0852894383108378
FPVVMLLGV	9	Unmodified	_FPVVMLLGV_					0	0	0		ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF	ENST00000513508.1_1_17:47781399-47782716:-|nuORF	ENST00000513508.1_1_17:47781399-47782716:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7276306152344	2	487.790807	973.56706	0.14299	6.9747E-05	-1.4015	-0.00068365	-1.2585	-0.0006139	487.7905304531079	80.406	0.95898	80.168	79.329	80.287	-0.23783					30	22	2	0	0	0	0.024389	1	9605	9605		39.021	3.4032	1	169110			17360	15709	12119	12144	19476	19476					0.07921964587308139
FPVVMLLGV	9	Unmodified	_FPVVMLLGV_					0	0	0		ENST00000513508.1_1_17:47781399-47782716:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF	ENST00000513508.1_1_17:47781399-47782716:-|nuORF	ENST00000513508.1_1_17:47781399-47782716:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.790807	973.56706	-1.0942	-0.00053376	1.7444	0.00085089	0.65012	0.00031712	487.79156078762844	80.455	0.8403	80.303	79.631	80.471	-0.15168	0.22948	0.00078897	NaN	39.021	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257120			17361	15709	12119	12144							0.07921964587308139
FPWGCEQN	8	Unmodified	_FPWGCEQN_					0	0	0			REV__PLEKHA4|p.R606W|1|0.18|ENSG00000105559|chr19:48841238-48841238|G/A|missense_variant	REV__PLEKHA4|p.R606W|1|0.18|ENSG00000105559|chr19:48841238-48841238|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7431640625	2	490.700177	979.385802	-0.50245	-0.00024655	1.0807	0.0005303	0.57826	0.00028375	490.7006951442716	31.355	0.11775	31.424	31.327	31.445	0.068962					4	2	2	0	0	0	0.027866	1	2032	2032		30.504	0	1	50735	+		17362	37384	12120	12145	19477	19477					-0.10471580456544416
FPWIIEVL	8	Unmodified	_FPWIIEVL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MSMS	OPSCC_40_ClassI_Rep-3	6	508.79437255859375	2	508.794404	1015.57425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.56	1	104.39	103.89	104.89	-0.16791								0	0	0	0.54229	1	13000	13000		52.299	3.0884	1				17363	1698	12121	12146	19478	19478					0.06709020459391013
FPWQVFTN	8	Unmodified	_FPWQVFTN_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7923583984375	2	519.75581	1037.49707	-0.17343	-9.0142E-05	4.3527	0.0022624	4.1793	0.0021722	520.2607611445512	54.064	0.099598	53.917	53.855	53.954	-0.14723					4	2	2	0	0	0	0.027866	1	5865	5865		31.955	0	1	58261			17364	6745	12122	12147	19479	19479					-0.02018197756956397
FPWRCGLF	8	Unmodified	_FPWRCGLF_					0	0	0		chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2537231445312	2	513.254923	1024.49529	-0.53561	-0.0002749	-1.2709	-0.00065229	-1.8065	-0.00092719	513.2542033824047	29.206	0.93709	29.033	28.766	29.703	-0.17258					59	21	5	0	0	0	0.58212	1	1752	1752		77.944	6.6481	1	2880300			17365	345	12123	12148	19480	19480					-0.015975300465697728
FPYEKVVQ	8	Unmodified	_FPYEKVVQ_					0	0	0		nc|ENSG00000011347|O43581|SYT7;nc|ENSG00000011347|O43581-6|SYT7;nc|ENSG00000011347|O43581-2|SYT7;ENST00000539246.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-5|SYT7;ENST00000539468.5_1_11:61286101-61314074:-|nuORF;nc|ENSG00000011347|O43581-4|SYT7;ENSG00000011347|ENST00000539008|SYT7	nc|ENSG00000011347|O43581|SYT7	nc|ENSG00000011347|O43581|SYT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7492370605469	2	505.271293	1008.52803	-0.62885	-0.00031774	-2.033	-0.0010272	-2.6619	-0.001345	505.27198986772333	26.67	0.12808	26.751	26.671	26.799	0.081291					4	2	2	0	0	0	0.027866	1	1330	1330		44.117	3.5442	1	20901			17366	894	12124	12149	19481	19481					0.024109555572863428
FPYLFGKSLH	10	Unmodified	_FPYLFGKSLH_					0	0	0			REV__ENST00000550011.5_1_12:32832273-32858928:+|nuORF	REV__ENST00000550011.5_1_12:32832273-32858928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.55487060546875	3	403.553603	1207.63898	0.29632	0.00011958	2.5614	0.0010337	2.8577	0.0011532	403.55460393591636	22.443	1.2102	22.258	21.667	22.877	-0.18539					58	25	4	0	0	0	1.0719	1	802	802		36.447	0	1	1487400	+		17367	34895	12125	12150	19482	19482					0.0434659526536052
FPYLHQDWE	9	Unmodified	_FPYLHQDWE_					0	0	0		ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.8876647949219	3	412.189101	1233.54547	-0.090442	-3.7279E-05	-1.1177	-0.00046071	-1.2081	-0.00049799	412.52304799152535	27.79	0.51488	27.548	27.207	27.721	-0.24217					16	11	2	0	0	0	0.024527	1	1556	1556		12.812	0	1	43043			17368	7715	12126	12151	19483	19483					-0.06195748907725829
FPYNSYCND	9	Unmodified	_FPYNSYCND_					0	0	0			REV__ENSG00000137270|ENST00000259803|GCM1	REV__ENSG00000137270|ENST00000259803|GCM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.27294921875	2	561.713482	1121.41241	-0.59301	-0.0003331	0.33447	0.00018788	-0.25854	-0.00014522	561.7133579029102	45.281	0.58421	45.182	44.942	45.526	-0.099445					22	16	2	0	0	0	0.024541	1	4252	4252		16.473	10.915	1	199540	+		17369	23744	12127	12152	19484	19484					-0.1434393635588549
FPYPQIQKN	9	Unmodified	_FPYPQIQKN_					0	0	0		nc|ENSG00000137764|Q13163-4|MAP2K5;ENSG00000137764|ENST00000178640|MAP2K5	nc|ENSG00000137764|Q13163-4|MAP2K5	nc|ENSG00000137764|Q13163-4|MAP2K5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3129272460938	2	567.800749	1133.58694	-0.67763	-0.00038476	0.038447	2.183E-05	-0.63918	-0.00036293	567.8004662958458	61.566	0.67968	61.566	61.295	61.974	0					46	17	4	0	0	0	0.021088	1	7090	7090		79.451	0	1	1172500			17370	5150	12128	12153	19485	19485					0.025494318515939085
FPYSRAPR	8	Unmodified	_FPYSRAPR_					0	0	0		ENST00000376723.7_1_2:128849017-128855062:+|nuORF	ENST00000376723.7_1_2:128849017-128855062:+|nuORF	ENST00000376723.7_1_2:128849017-128855062:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2685852050781	2	497.266876	992.519199	-0.6149	-0.00030577	3.2852	0.0016336	2.6703	0.0013279	497.26810850131795	35.208	1.1334	35.022	34.519	35.652	-0.18675					70	29	3	0	0	0	0.91956	1	2646	2646		49.442	6.9671	1	775650			17371	13188	12129	12154	19486	19486					0.022640267114638846
FQAAQLKQQ	9	Unmodified	_FQAAQLKQQ_					0	0	0			REV__nc|ENSG00000187098|O75030-12|MITF	REV__nc|ENSG00000187098|O75030-12|MITF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2931518554688	2	531.290548	1060.56654	-0.79244	-0.00042102	3.7404	0.0019872	2.9479	0.0015662	531.2923680423469	31.232	2.9557	31.047	30.076	33.031	-0.18503					187	71	4	0	0	0	0.62163	1	2083	2083		51.335	3.6781	1	4279400	+		17372	27913	12130	12155	19487	19487					0.03868261191792044
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2763366699219	2	508.276575	1014.5386	-0.37554	-0.00019088	0.018693	9.5013E-06	-0.35685	-0.00018138	508.27654786326235	78.125	2.4106	78.125	77.752	80.163	0					111	57	5	0	0	0	0.013293	3	9663	9640;9651;9663		176.09	88.332	1	19210000			17373	3943	12131	12156	19488;19489;19490	19490					0.03190938211696448
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2767028808594	2	508.276575	1014.5386	0.69873	0.00035515	-1.2158	-0.00061797	-0.51709	-0.00026283	508.2759494640894	78.296	2.2443	78.104	77.723	79.968	-0.1921					104	53	5	0	0	0	0.027092	3	9683	9658;9670;9683		143.89	67.113	1	18313000			17374	3943	12131	12156	19491;19492;19493	19493					0.03190938211696448
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2765808105469	2	508.276575	1014.5386	-0.44098	-0.00022414	0.080851	4.1095E-05	-0.36013	-0.00018305	508.276570616458	78.185	2.2772	78.201	77.78	80.057	0.015907					112	54	5	0	0	0	0.013293	3	9599	9574;9599;9623		176.09	91.171	1	18953000			17375	3943	12131	12156	19494;19495;19496	19495					0.03190938211696448
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2760314941406	2	508.276575	1014.5386	-0.21828	-0.00011095	0.067498	3.4307E-05	-0.15079	-7.6641E-05	508.27646670022784	78.29	1.3196	78.035	77.62	78.939	-0.25471					72	30	4	0	0	0	0.086035	3	9321	9321;9333;9351		115.49	51.287	1	3059700			17376	3943	12131	12156	19497;19498;19499	19497					0.03190938211696448
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.27642822265625	2	508.276575	1014.5386	0.27283	0.00013868	-0.473	-0.00024041	-0.20017	-0.00010174	508.2761872869712	78.29	1.7717	78.058	77.668	79.439	-0.23141					81	41	4	0	0	0	0.15366	2	9346	9323;9346		98.629	26.752	1	3411100			17377	3943	12131	12156	19500;19501	19501					0.03190938211696448
FQDPVPLTV	9	Unmodified	_FQDPVPLTV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2763977050781	2	508.276575	1014.5386	-0.14091	-7.1622E-05	-0.054552	-2.7728E-05	-0.19546	-9.935E-05	508.27643283707187	78.216	1.4025	78.06	77.659	79.062	-0.15591					70	32	4	0	0	0	0.077175	3	9313	9302;9313;9324		118.74	53.387	1	3433400			17378	3943	12131	12156	19502;19503;19504	19503					0.03190938211696448
FQEHIQAP	8	Unmodified	_FQEHIQAP_					0	0	0		ENST00000581139.1_1_18:2946096-2946618:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.25909423828125	2	485.243067	968.47158	-0.91758	-0.00044525	3.3095	0.0016059	2.3919	0.0011607	485.24461397089914	28.346	0.32034	28.101	27.961	28.281	-0.24524					11	7	2	0	0	0	0.027866	1	1632	1632		45.952	1.8352	1	94975			17379	17160	12132	12157	19505	19505					-0.013916722793965164
FQEHIQAP	8	Unmodified	_FQEHIQAP_					0	0	0		ENST00000581139.1_1_18:2946096-2946618:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.243067	968.47158	-0.70255	-0.00034091	2.9683	0.0014404	2.2658	0.0010995	485.2444204205101	28.168	0.3249	27.999	27.847	28.171	-0.16897	-0.073351	-2.7829E-05	NaN	45.952	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68778			17380	17160	12132	12157							-0.013916722793965164
FQEHIQAP	8	Unmodified	_FQEHIQAP_					0	0	0		ENST00000581139.1_1_18:2946096-2946618:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.243067	968.47158	-0.2096	-0.00010171	2.9157	0.0014148	2.7061	0.0013131	485.24408236891577	28.27	0.32198	28.118	27.961	28.283	-0.15195	0.045299	-7.8913E-05	NaN	45.952	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65474			17381	17160	12132	12157							-0.013916722793965164
FQEYMAQME	9	2 Oxidation (M)	_FQEYM(Oxidation (M))AQM(Oxidation (M))E_		FQEYM(1)AQM(1)E		FQEYM(46)AQM(46)E	0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.7332763671875	2	604.733557	1207.45256	0.38713	0.00023411	-0.59325	-0.00035876	-0.20612	-0.00012465	604.7331950759229	85.251	0.95988	85.101	84.787	85.747	-0.14967					57	22	4	0	0	0	0.70156	1	10351	10351		45.972	8.1607	1	916020			17382	6973	12133	12158	19506	19506		289;290			-0.14286757747595402
FQEYMAQME	9	2 Oxidation (M)	_FQEYM(Oxidation (M))AQM(Oxidation (M))E_					0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	604.733557	1207.45256	-0.19953	-0.00012066	0.36089	0.00021824	0.16137	9.7583E-05	604.7336036213018	85.345	0.87292	85.15	84.848	85.721	-0.19508	0.014511	0.00047355	NaN	45.972	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824160			17383	6973	12133	12158				289;290			-0.14286757747595402
FQEYMAQME	9	2 Oxidation (M)	_FQEYM(Oxidation (M))AQM(Oxidation (M))E_					0	0	2		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	604.733557	1207.45256	0.26739	0.0001617	-0.054018	-3.2667E-05	0.21337	0.00012903	604.7333268852672	85.293	0.83369	85.155	84.868	85.702	-0.13753	0.019792	-2.8276E-05	NaN	45.972	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	851440			17384	6973	12133	12158				289;290			-0.14286757747595402
FQFHATCDS	9	Carbamidomethyl (C)	_FQFHATC(Carbamidomethyl (C))DS_	FQFHATC(1)DS		FQFHATC(61)DS		0	1	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.727294921875	2	556.726923	1111.43929	-0.2507	-0.00013957	3.4759	0.0019351	3.2252	0.0017955	556.7288757113257	57.388	1.8412	57.484	56.945	58.786	0.095306					80	49	2	0	0	0	0.4752	1	6393	6393		60.972	60.972	1	26401000	+		17385	27399	12134	12159	19507	19507	361				-0.11196827744720395
FQHLTCVI	8	Unmodified	_FQHLTCVI_					0	0	0		ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.75042724609375	2	480.752213	959.489873	-0.79196	-0.00038074	-3.8679	-0.0018595	-4.6599	-0.0022403	480.75038998821515	30.405	0.73777	30.405	29.855	30.592	0					65	17	5	0	0	0	0.68535	1	1967	1967		68.485	2.6815	1	8151900			17386	973	12135	12160	19508	19508					0.008507463709747753
FQHQEDSK	8	Unmodified	_FQHQEDSK_					0	0	0		nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7638244628906	2	509.733063	1017.45157	-0.15488	-7.8946E-05	-4.3212	-0.0022026	-4.476	-0.0022816	509.7303278560378	49.161	0.34539	48.979	48.883	49.228	-0.18206					13	8	2	0	0	0	0.027866	1	4935	4935		21.96	0	1	187730			17387	5053	12136	12161	19509	19509					-0.056454680099932375
FQILFPKMP	9	Unmodified	_FQILFPKMP_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8322143554688	2	560.814813	1119.61507	-0.15512	-8.6996E-05	2.2878	0.001283	2.1327	0.001196	560.8159605109959	79.193	0.5313	79.212	78.903	79.434	0.018677					19	12	2	0	0	0	0.024354	1	9721	9721		38.806	10.725	1	187120			17388	18487	12137	12162	19510	19510					0.06005038507350946
FQILFPKMP	9	Unmodified	_FQILFPKMP_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.814813	1119.61507	0.46108	0.00025858	2.7008	0.0015147	3.1619	0.0017733	560.8162069640638	79.349	0.70792	79.102	78.822	79.53	-0.2465	-0.044723	-0.00015404	NaN	38.806	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126250			17389	18487	12137	12162							0.06005038507350946
FQILFPKMP	9	Unmodified	_FQILFPKMP_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	560.814813	1119.61507	0.22189	0.00012444	2.8286	0.0015863	3.0505	0.0017108	560.8164636262316	79.335	0.70309	79.116	78.791	79.494	-0.21923	-0.031623	-1.0738E-05	NaN	38.806	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148660			17390	18487	12137	12162							0.06005038507350946
FQILFPKMP	9	Unmodified	_FQILFPKMP_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.814813	1119.61507	-0.037236	-2.0882E-05	3.929	0.0022034	3.8917	0.0021825	560.8170774223206	79.294	0.58472	79.144	78.903	79.487	-0.15051	-0.0033196	0.0012235	NaN	38.806	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112530			17391	18487	12137	12162							0.06005038507350946
FQIPCIVPELN	11	Unmodified	_FQIPCIVPELN_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7485656738281	3	424.893408	1271.65839	-0.059565	-2.5309E-05	0.027179	1.1548E-05	-0.032386	-1.3761E-05	424.89341185587153	26.4	0.98004	26.481	26.051	27.031	0.081293					61	23	4	0	0	0	0.024792	1	1241	1241		13.508	0	1	1519500			17392	3114	12138	12163	19511	19511					0.03343183493984725
FQIPSVFTV	9	Unmodified	_FQIPSVFTV_					0	0	0		KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.287109375	2	519.286943	1036.55933	-0.15932	-8.2735E-05	-0.30822	-0.00016006	-0.46755	-0.00024279	519.2865358778009	95.224	1.1666	95.229	94.532	95.698	0.0041199					58	26	3	0	0	0	0.14024	1	12062	12062		101.6	44.88	1	584640			17393	10759	12139	12164	19512	19512					0.042515285913850676
FQIPSVFTV	9	Unmodified	_FQIPSVFTV_					0	0	0		KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.286943	1036.55933	-0.56399	-0.00029287	-1.3643	-0.00070845	-1.9283	-0.0010013	519.2856011367954	95.246	1.9601	95.246	94.788	96.748	0	0.046339	-0.0011247	NaN	101.6	82	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493400			17394	10759	12139	12164							0.042515285913850676
FQIPSVFTV	9	Unmodified	_FQIPSVFTV_					0	0	0		KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant;nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.286943	1036.55933	0.011023	5.7243E-06	-0.2187	-0.00011357	-0.20767	-0.00010784	519.2866708430664	95.122	0.86476	95.125	94.651	95.516	0.0033722	-0.074827	6.5063E-05	NaN	101.6	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515760			17395	10759	12139	12164							0.042515285913850676
FQIVAVGPSH	10	Unmodified	_FQIVAVGPSH_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2577514648438	2	527.787641	1053.56073	-1.6382	-0.00086461	3.8358	0.0020245	2.1977	0.0011599	527.7895885843809	44.386	0.954	44.386	44.089	45.043	0					65	27	3	0	0	0	0.03519	1	4265	4265		36.447	13.404	1	1788900	+		17396	22790	12140	12165	19513	19513					0.03609162680118061
FQKLRFQF	8	Unmodified	_FQKLRFQF_					0	0	0		ENSG00000230358|ENST00000424157|SPDYE21;nc|ENSG00000179994|Q495Y7|SPDYE7P;nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000185040|ENST00000633306|SPDYE16	ENSG00000230358|ENST00000424157|SPDYE21	ENSG00000230358|ENST00000424157|SPDYE21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	556.3162231445312	2	557.313826	1112.6131	0.22078	0.00012304	-3.8023	-0.0021191	-3.5816	-0.0019961	557.3115392444242	22.79	0.41919	22.601	22.374	22.793	-0.18894					18	8	3	0	0	0	0.027866	1	823	823		40.573	20.576	1	126220			17397	10688	12141	12166	19514	19514					0.061297458137460126
FQKTKNLL	8	Unmodified	_FQKTKNLL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;ENST00000587537.5_1_19:45480680-45489871:+|nuORF	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.30010986328125	2	496.300384	990.586216	-0.39668	-0.00019687	-0.27011	-0.00013406	-0.66679	-0.00033093	496.30024524162	33.325	1.6203	33.094	32.752	34.372	-0.23107					104	40	5	0	0	0	0.27613	4	2368	2344;2356;2368;2381		122.18	19.403	1	9170900			17398	2607	12142	12167	19515;19516;19517;19518	19517					0.09054637202575577
FQKTKNLL	8	Unmodified	_FQKTKNLL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;ENST00000587537.5_1_19:45480680-45489871:+|nuORF	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.3002014160156	2	496.300384	990.586216	-0.21494	-0.00010668	-0.42535	-0.0002111	-0.64029	-0.00031778	496.3001390987475	33.313	1.6784	33.113	32.813	34.492	-0.20019					104	42	5	0	0	0	0.30694	4	2355	2345;2355;2367;2380		110.12	19.343	1	12763000			17399	2607	12142	12167	19519;19520;19521;19522	19520					0.09054637202575577
FQKTKNLL	8	Unmodified	_FQKTKNLL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;ENST00000587537.5_1_19:45480680-45489871:+|nuORF	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.3002624511719	2	496.300384	990.586216	-0.95557	-0.00047425	0.22616	0.00011224	-0.72941	-0.00036201	496.30046793217934	33.263	1.8625	33.097	32.76	34.622	-0.16565					103	46	5	0	0	0	0.42912	4	2331	2331;2343;2355;2368		93.195	10.89	1	11329000			17400	2607	12142	12167	19523;19524;19525;19526	19523					0.09054637202575577
FQKTKNLL	8	Unmodified	_FQKTKNLL_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1;ENST00000587537.5_1_19:45480680-45489871:+|nuORF	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.300384	990.586216	0.40357	0.00020029	4.0366	0.0020034	4.4402	0.0022037	496.30327851098525	32.891	0.23128	32.954	32.845	33.076	0.062885	-0.1102	0.0041702	NaN	122.18	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30325			17401	2607	12142	12167							0.09054637202575577
FQLAALLKQ	9	Unmodified	_FQLAALLKQ_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.8186645507812	2	516.316035	1030.61752	-1.1059	-0.00057099	1.8821	0.00097177	0.77623	0.00040078	516.8191694207044	21.614	0.63123	21.401	21.118	21.749	-0.2128					30	12	4	0	0	0	0.70186	1	673	673		45.952	5.1738	1	506120	+		17402	36711	12143	12168	19527	19527					0.10343210236646883
FQLPLRPL	8	Unmodified	_FQLPLRPL_					0	0	0			REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7845764160156	2	492.30547	982.596387	-0.02363	-1.1633E-05	-1.3	-0.00063998	-1.3236	-0.00065161	492.30494269173465	78.622	0.9165	78.622	78.202	79.119	0					44	21	3	0	0	0	0.027866	1	9738	9738		50.025	9.4519	1	164150	+		17403	32057	12144	12169	19528	19528					0.10439244927806612
FQLPLRPL	8	Unmodified	_FQLPLRPL_					0	0	0			REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.78729248046875	2	492.30547	982.596387	-0.30379	-0.00014956	-1.045	-0.00051445	-1.3488	-0.00066401	492.3052455906472	78.564	1.1566	78.58	78.115	79.271	0.015915					49	27	3	0	0	0	0.027866	1	9655	9655		40.573	8.6178	1	213280	+		17404	32057	12144	12169	19529	19529					0.10439244927806612
FQLPLRPL	8	Unmodified	_FQLPLRPL_					0	0	0			REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.30547	982.596387	-0.42723	-0.00021033	0.12243	6.0272E-05	-0.3048	-0.00015006	492.3054489995889	78.66	0.51686	78.405	78.17	78.687	-0.25471	-0.064165	0.00074519	NaN	50.025	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275770	+		17405	32057	12144	12169							0.10439244927806612
FQLPLRPL	8	Unmodified	_FQLPLRPL_					0	0	0			REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.30547	982.596387	0.16194	7.9723E-05	-0.9101	-0.00044805	-0.74816	-0.00036832	492.3049364595306	78.501	0.51416	78.346	78.043	78.557	-0.15592	-0.12404	-0.00027145	NaN	50.025	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130030	+		17406	32057	12144	12169							0.10439244927806612
FQLQPSCLCYF	11	Unmodified	_FQLQPSCLCYF_					0	0	0		ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.206787109375	3	450.206998	1347.59917	0.82021	0.00036926	-1.7975	-0.00080923	-0.97727	-0.00043997	450.2062862239645	22.791	1.1455	22.589	22.285	23.431	-0.20199					72	25	5	0	0	0	1.0123	1	807	807		34.087	1.0471	1	4455900			17407	978	12145	12170	19530	19530					-0.06073035791860093
FQLRIEAR	8	Unmodified	_FQLRIEAR_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.818603515625	2	516.801083	1031.58761	0.24672	0.0001275	-0.68797	-0.00035554	-0.44125	-0.00022804	516.8005403790617	21.707	0.4785	21.53	21.303	21.781	-0.17721					20	9	3	0	0	0	0.027866	1	684	684		26.693	0	1	69781			17408	7543	12146	12171	19531	19531					0.07308271291321944
FQLSWKTL	8	Unmodified	_FQLSWKTL_					0	0	0		Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|20|1|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|20|1|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|20|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2883911132812	2	511.78711	1021.55967	-1.0025	-0.00051306	0.70697	0.00036182	-0.29552	-0.00015124	512.290039547398	83.931	0.56428	83.843	83.598	84.162	-0.088135					40	12	4	0	0	0	0.83003	1	10477	10477		56.721	3.7844	1	948890			17409	38070	12147	12172	19532	19532					0.0497494831122367
FQLSWKTL	8	Unmodified	_FQLSWKTL_					0	0	0		Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|20|1|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|20|1|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|20|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.78711	1021.55967	0.21055	0.00010775	-6.2886	-0.0032184	-6.0781	-0.0031107	512.2843362364279	83.73	0.20627	83.592	83.465	83.671	-0.13861	-0.12554	-0.00028517	NaN	56.721	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38875			17410	38070	12147	12172							0.0497494831122367
FQPLLNNYVS	10	Unmodified	_FQPLLNNYVS_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8111572265625	2	597.811313	1193.60807	-0.37188	-0.00022231	-0.025935	-1.5504E-05	-0.39781	-0.00023782	597.8111892446683	73.589	0.59863	73.399	73.085	73.683	-0.19026					42	14	4	0	0	0	0.98527	1	8671	8671		47.96	5.0953	1	1209200	+		17411	28058	12148	12173	19533	19533					0.019013971604636026
FQQIFRRFRYR	11	Unmodified	_FQQIFRRFRYR_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2;REV__JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.92303466796875	4	404.978476	1615.8848	-0.24102	-9.7609E-05	1.9977	0.00080901	1.7566	0.0007114	405.230389636735	26.563	0.4058	26.327	26.13	26.535	-0.23603					17	10	2	0	0	0	0.024888	1	1373	1373		9.6461	6.0271	1	90024	+		17412	20990;36164;36165	12149	12174	19534	19534					0.10149108167934173
FQQIQELV	8	Unmodified	_FQQIQELV_					0	0	0			REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.8104553222656	2	502.7742	1003.53385	-0.37702	-0.00018956	0.27371	0.00013761	-0.10331	-5.1943E-05	503.2756141132542	69.359	0.62011	69.375	69.133	69.754	0.015121					25	15	3	0	0	0	0.027866	1	8273	8273		47.916	0	1	492340	+		17413	22033	12150	12175	19535	19535					0.03222054068953639
FQSALVPEP	9	Unmodified	_FQSALVPEP_					0	0	0			REV__ENST00000421826.6_2_6:27223302-27223911:+|nuORF	REV__ENST00000421826.6_2_6:27223302-27223911:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7821960449219	2	494.260925	986.507297	-0.42542	-0.00021027	1.7875	0.00088347	1.362	0.0006732	494.26048073093176	66.585	0.41058	66.34	66.011	66.422	-0.24517					20	10	3	0	0	0	0.024374	1	7589	7589		32.812	11.865	1	250360	+		17414	32188	12151	12176	19536	19536					0.01350365177609092
FQSALVPEP	9	Unmodified	_FQSALVPEP_					0	0	0			REV__ENST00000421826.6_2_6:27223302-27223911:+|nuORF	REV__ENST00000421826.6_2_6:27223302-27223911:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.260925	986.507297	-0.52742	-0.00026068	3.1249	0.0015445	2.5974	0.0012838	494.260719393281	66.567	0.77911	66.343	65.66	66.439	-0.22374	0.077076	0.0013437	NaN	39.253	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238770	+		17415	32188	12151	12176							0.01350365177609092
FQSSAVMAL	9	Oxidation (M)	_FQSSAVM(Oxidation (M))AL_		FQSSAVM(1)AL		FQSSAVM(99)AL	0	0	1		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2393798828125	2	485.239135	968.463718	-0.62342	-0.00030251	0.51248	0.00024868	-0.11094	-5.3831E-05	485.2392288659267	57.074	0.64591	57.169	56.783	57.429	0.09531					51	17	4	0	0	0	0.15029	1	6332	6332		99.375	28.079	1	1805000			17416	7790	12152	12177	19537	19537		318			-0.021775675911499093
FQTLLHSSL	9	Unmodified	_FQTLLHSSL_					0	0	0			REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.28466796875	2	523.287474	1044.5604	-1.1901	-0.00062274	-3.5755	-0.001871	-4.7656	-0.0024938	523.2856534320678	37.942	0.86172	37.969	37.71	38.572	0.027275					68	24	3	0	0	0	0.27161	1	3079	3079		79.451	4.4077	1	7282300	+		17417	34907	12153	12178	19538	19538					0.039897429602888224
FQVSSLLR	8	Unmodified	_FQVSSLLR_					0	0	0		ENSG00000197779|ENST00000338637|ZNF81	ENSG00000197779|ENST00000338637|ZNF81	ENSG00000197779|ENST00000338637|ZNF81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.26104736328125	2	475.276909	948.539266	-0.519	-0.00024667	0.9839	0.00046763	0.4649	0.00022096	475.2769599261778	28.604	0.25646	28.435	28.254	28.51	-0.16897					6	5	2	0	0	0	0.027866	1	1666	1666		40.573	15.122	1	38248			17418	10048	12154	12179	19539	19539					0.06293777651433174
FQVVLVSTKV	10	Unmodified	_FQVVLVSTKV_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3403930664062	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	1.1266	1	12673	12673		29.17	3.596	1	13153000	+		17419	27885	12155	12180	19540	19540					0.1153574857962667
FQYEVSAVH	9	Unmodified	_FQYEVSAVH_					0	0	0		ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.327392578125	2	540.261456	1078.50836	-0.89337	-0.00048266	3.2357	0.0017481	2.3423	0.0012655	540.2629194903951	49.049	1.3933	48.896	48.125	49.518	-0.15277					66	38	2	0	0	0	0.024447	1	5033	5033		49.442	8.8689	1	353920			17420	6428	12156	12181	19541	19541					-0.027754204534858218
FQYLKGQVK	9	Unmodified	_FQYLKGQVK_					0	0	0		nc|ENSG00000079134|Q96FV9-2|THOC1;ENSG00000079134|ENST00000261600|THOC1;ENST00000578529.5_1_18:214628-260326:-|nuORF	nc|ENSG00000079134|Q96FV9-2|THOC1	nc|ENSG00000079134|Q96FV9-2|THOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.2904663085938	2	555.818941	1109.62333	-0.79543	-0.00044211	0.23092	0.00012835	-0.56451	-0.00031377	555.8188526937889	60.652	0.60369	60.398	60.132	60.735	-0.25374					45	14	4	0	0	0	0.024541	1	6755	6755		24.203	0	1	1171400			17421	1652	12157	12182	19542	19542					0.0729030874831551
FQYVTDLILC	10	Unmodified	_FQYVTDLILC_					0	0	0			REV__ENST00000475777.2_1_12:110882884-110883061:-|nuORF	REV__ENST00000475777.2_1_12:110882884-110883061:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.8876953125	3	405.542375	1213.6053	0.63313	0.00025676	3.6955	0.0014987	4.3287	0.0017555	405.5440478747224	22.807	0.8748	22.605	22.194	23.069	-0.20198					25	18	2	0	0	0	0.03519	1	796	796		20.837	2.3061	1	115340	+		17422	33301	12158	12183	19543	19543					0.007038057113277318
FRASAEAL	8	Unmodified	_FRASAEAL_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.7322692871094	2	432.732335	863.450116	0.7048	0.00030499	-0.27631	-0.00011957	0.42848	0.00018542	432.73206086051925	33.422	0.9331	33.479	32.838	33.771	0.056568					48	24	4	0	0	0	0.56067	1	2366	2366		79.939	3.0926	1	1262800	+		17423	22918	12159	12184	19544	19544					0.01292942691884491
FRCKLLTCRTE	11	Unmodified	_FRCKLLTCRTE_					0	0	0			REV__ENST00000462030.5_1_3:148857907-148858006:+|nuORF	REV__ENST00000462030.5_1_3:148857907-148858006:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2416687011719	3	457.240813	1368.70061	0.64284	0.00029393	1.1253	0.00051452	1.7681	0.00080845	457.24141965450633	71.453	0.82214	71.247	70.877	71.699	-0.20613					49	19	4	0	0	0	1.0471	1	8353	8353		25.892	2.3774	1	1145100	+		17424	32890	12160	12185	19545	19545					0.031008356306983842
FRCWALRKDWY	11	Unmodified	_FRCWALRKDWY_					0	0	0		nc|ENSG00000198625|O15151-5|MDM4;ENSG00000198625|ENST00000367182|MDM4	nc|ENSG00000198625|O15151-5|MDM4	nc|ENSG00000198625|O15151-5|MDM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8001098632812	3	515.259084	1542.75542	-0.79129	-0.00040772	1.9424	0.0010008	1.1511	0.0005931	515.2599739682737	45.87	0.60899	45.667	45.358	45.967	-0.20226					41	16	3	0	0	0	0.024801	1	4319	4319		23.378	8.0448	1	1027000			17425	10158	12161	12186	19546	19546					0.005755904936222578
FREIAQHQ	8	Unmodified	_FREIAQHQ_					0	0	0			REV__nc|ENSG00000008517|P24001|IL32	REV__nc|ENSG00000008517|P24001|IL32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7981567382812	2	514.76724	1027.51993	1.4513	0.00074706	0.98066	0.00050481	2.4319	0.0012519	514.7679609402207	16.656	0.24625	16.503	16.409	16.656	-0.15376					6	5	2	0	0	0	0.027866	1	103	103		20.482	6.7065	1	16200	+		17426	36433	12162	12187	19547	19547					0.0072682136051298585
FREIAQHQ	8	Unmodified	_FREIAQHQ_					0	0	0			REV__nc|ENSG00000008517|P24001|IL32	REV__nc|ENSG00000008517|P24001|IL32	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.76724	1027.51993	-0.17756	-9.1401E-05	3.4896	0.0017963	3.312	0.0017049	514.7689289864461	16.66	0.20469	16.452	16.315	16.519	-0.20777	-0.025329	0.00082554	NaN	20.482	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9860.1	+		17427	36433	12162	12187							0.0072682136051298585
FRELTHLL	8	Unmodified	_FRELTHLL_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7981567382812	2	514.798009	1027.58147	1.4491	0.000746	1.3594	0.00069982	2.8085	0.0014458	514.7990676711141	16.742	0.42225	16.588	16.485	16.907	-0.15376					11	8	2	0	0	0	1.0574	1	103	103		20.482	0	1	23328	+		17428	22489	12163	12188	19548	19548					0.06877753059802671
FRGGHDILV	9	Unmodified	_FRGGHDILV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2801513671875	2	507.279983	1012.54541	-0.53355	-0.00027066	-0.1819	-9.2273E-05	-0.71545	-0.00036293	507.2799725785459	49.748	1.2785	49.823	49.391	50.669	0.074192					98	36	5	0	0	0	0.75397	1	5124	5124		42.396	1.8235	1	21543000			17429	9070	12164	12189	19549	19549					0.03964295882951774
FRGLPNLI	8	Unmodified	_FRGLPNLI_					0	0	0		ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2820739746094	2	465.281995	928.549437	-0.58767	-0.00027343	0.56147	0.00026124	-0.026206	-1.2193E-05	465.28206031836805	69.517	1.7711	69.25	67.933	69.704	-0.26724					115	42	4	0	0	0	0.52467	1	8046	8046		83.287	0	1	1206600			17430	1115	12165	12190	19550	19550					0.08230385376668892
FRHDKRVYL	9	Unmodified	_FRHDKRVYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.90020751953125	3	411.899885	1232.67783	-1.3252	-0.00054587	1.2416	0.00051141	-0.083647	-3.4454E-05	411.9003847920841	28.799	1.111	28.553	28.162	29.273	-0.24524					63	25	5	0	0	0	0.35556	3	1723	1699;1711;1723		68.846	29.682	1	1863200			17431	8454	12166	12191	19551;19552;19553	19553					0.07079320619754981
FRHDKRVYL	9	Unmodified	_FRHDKRVYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.9001159667969	3	411.899885	1232.67783	-0.40611	-0.00016727	0.21345	8.792E-05	-0.19266	-7.9355E-05	411.89999672597156	28.702	1.8344	28.533	28.171	30.006	-0.16897					82	42	4	0	0	0	0.22902	3	1686	1686;1696;1709		85.161	39.253	1	1576000			17432	8454	12166	12191	19554;19555;19556	19554					0.07079320619754981
FRHDKRVYL	9	Unmodified	_FRHDKRVYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.9000549316406	3	411.899885	1232.67783	-0.34373	-0.00014158	0.40771	0.00016794	0.063982	2.6354E-05	411.9000287976534	28.68	1.5036	28.528	28.203	29.707	-0.15195					75	35	4	0	0	0	0.247	2	1678	1669;1678		82.75	38.206	1	1645200			17433	8454	12166	12191	19557;19558	19558					0.07079320619754981
FRHKEPLF	8	Unmodified	_FRHKEPLF_					0	0	0			REV__ENST00000506925.2_1_12:27702372-27705598:-|nuORF	REV__ENST00000506925.2_1_12:27702372-27705598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2982788085938	2	537.298176	1072.5818	2.365	0.0012707	-3.2622	-0.0017528	-0.89719	-0.00048206	537.2962755796411	19.118	0.69167	19.184	18.945	19.637	0.066195					23	13	3	0	0	0	1.0516	1	330	330		29.15	0.89528	1	87200	+		17434	34039	12167	12192	19559	19559					0.0484117277965197
FRIRYLLVQ	9	Unmodified	_FRIRYLLVQ_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.3661499023438	2	604.369133	1206.72371	-0.44133	-0.00026673	-3.3918	-0.0020499	-3.8331	-0.0023166	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	0.80658	1	13262	13262		38.806	8.4884	1	5077600	+		17435	21546	12168	12193	19560	19560					0.12861965801971564
FRKDVIIDL	9	Unmodified	_FRKDVIIDL_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8319702148438	2	559.832049	1117.64954	0.12206	6.8333E-05	-0.45258	-0.00025337	-0.33052	-0.00018504	559.8316431324588	72.787	1.1115	72.797	72.529	73.64	0.0096512					78	27	4	0	0	0	0.20967	1	8787	8787		87.754	2.5935	1	5021100			17436	9027	12169	12194	19561	19561					0.09542577919796713
FRKESSEA	8	Unmodified	_FRKESSEA_					0	0	0			REV__ENSG00000135324|ENST00000257776|MRAP2	REV__ENSG00000135324|ENST00000257776|MRAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.236572265625	2	477.237981	952.461409	0.34218	0.0001633	-0.27509	-0.00013128	0.067088	3.2017E-05	477.2378523213857	31.806	1.5894	31.806	31.089	32.679	0					130	39	5	0	0	0	0.6248	1	2118	2118		73.975	2.679	1	8385700	+		17437	23530	12170	12195	19562	19562					-0.016722800046181874
FRKKRISGTG	10	Unmodified	_FRKKRISGTG_					0	0	0			REV__ENSG00000154734|ENST00000284984|ADAMTS1	REV__ENSG00000154734|ENST00000284984|ADAMTS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8470458984375	2	575.346189	1148.67783	-0.38187	-0.0002197	-0.74323	-0.00042762	-1.1251	-0.00064732	575.3456405295979	97.221	1.199	97.06	96.639	97.838	-0.16106					88	26	5	0	0	0	1.1162	1	11973	11973		19.104	0.77911	1	4066100	+		17438	24971	12171	12196	19563	19563					0.10943320619753649
FRKKTHVKFPL	11	Unmodified	_FRKKTHVKFPL_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.6240539550781	3	467.622351	1399.84522	0.98972	0.00046281	2.0095	0.0009397	2.9992	0.0014025	467.6232186790615	106.95	0.65829	106.95	106.77	107.43	0					56	18	5	0	0	0	1.09	1	13762	13762		14.086	1.6532	1	698760			17439	9691	12172	12197	19564	19564					0.16129588164517372
FRKKTHVKFPL	11	Unmodified	_FRKKTHVKFPL_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.95843505859375	3	467.622351	1399.84522	0.09496	4.4405E-05	2.9361	0.001373	3.031	0.0014174	467.62365324391635	107.08	0.60744	106.96	106.74	107.35	-0.12381					60	20	4	0	0	0	1.0921	1	13320	13320		13.508	1.5756	1	609420			17440	9691	12172	12197	19565	19565					0.16129588164517372
FRKKTHVKFPL	11	Unmodified	_FRKKTHVKFPL_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.6237487792969	3	467.622351	1399.84522	-1.1469	-0.0005363	4.0845	0.00191	2.9376	0.0013737	467.62416997487236	107.17	0.54526	107.04	106.79	107.33	-0.1346					60	21	4	0	0	0	1.0563	1	13305	13305		23.378	4.8469	1	487560			17441	9691	12172	12197	19566	19566					0.16129588164517372
FRKLLCRFLN	10	Unmodified	_FRKLLCRFLN_					0	0	0		ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	ENST00000333957.8_1_12:22602190-22602310:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.2570495605469	3	437.256904	1308.74888	0.14146	6.1854E-05	0.98111	0.000429	1.1226	0.00049085	437.25730148495717	97.255	3.51	97.255	96.194	99.704	0					235	80	4	0	0	0	1.1333	1	12479	12479		28.081	0	1	1246800			17442	12376	12173	12198	19567	19567					0.10685697332928612
FRKLNTKLM	9	Unmodified	_FRKLNTKLM_					0	0	0		ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8428955078125	2	575.841894	1149.66923	-0.82546	-0.00047534	2.7583	0.0015883	1.9328	0.001113	575.8433114529906	88.92	2.4021	88.92	87.573	89.975	0					191	57	4	0	0	0	0.87448	1	11267	11267		34.173	3.6689	1	1520800			17443	134	12174	12199	19568	19568					0.10038630658914371
FRKLNTKLM	9	Unmodified	_FRKLNTKLM_					0	0	0		ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8428955078125	2	575.841894	1149.66923	-0.082096	-4.7274E-05	1.9831	0.001142	1.901	0.0010947	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	0.87448	1	11167	11167		34.173	2.2177	1	1475600			17444	134	12174	12199	19569	19569					0.10038630658914371
FRKLNTKLM	9	Unmodified	_FRKLNTKLM_					0	0	0		ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	ARSI|p.R563K|1|0.14|ENSG00000183876|chr5:150297236-150297236|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8431396484375	2	575.841894	1149.66923	-0.51071	-0.00029409	2.3351	0.0013446	1.8244	0.0010506	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.77768	1	10897	10897		40.778	9.2484	1	2085600			17445	134	12174	12199	19570	19570					0.10038630658914371
FRKLRQQDL	9	Unmodified	_FRKLRQQDL_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.90374755859375	3	401.903406	1202.68839	0.39941	0.00016052	-0.24206	-9.7286E-05	0.15734	6.3237E-05	401.90329791602306	30.567	0.78964	30.388	30.083	30.872	-0.17818					50	18	4	0	0	0	0.56934	1	1965	1965		54.776	3.5836	1	1951400			17446	2050	12175	12200	19571	19571					0.0951530327420187
FRKLRQQDL	9	Unmodified	_FRKLRQQDL_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.9034423828125	3	401.903406	1202.68839	-0.43037	-0.00017297	0.5414	0.00021759	0.11103	4.4624E-05	401.9035898683265	30.615	0.95294	30.465	30.056	31.009	-0.14952					54	22	4	0	0	0	0.45795	1	1948	1948		62.107	12.666	1	1769100			17447	2050	12175	12200	19572	19572					0.0951530327420187
FRKRWWPRNRD	11	Unmodified	_FRKRWWPRNRD_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8181762695312	3	539.627158	1615.85965	-0.20482	-0.00011053	-0.59939	-0.00032344	-0.8042	-0.00043397	539.9605877384826	74.65	0.21416	74.375	74.265	74.479	-0.27573					7	4	2	0	0	0	0.024901	1	8797	8797		3.6191	0	1	134380	+		17448	25860	12176	12201	19573	19573					0.07635053365333988
FRLFVLFPSL	10	Unmodified	_FRLFVLFPSL_					0	0	0			REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|30	REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|30	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8689575195312	2	619.868434	1237.72232	-1.6623	-0.0010304	3.0625	0.0018983	1.4001	0.0008679	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	1.1307	2	11361	11361;11374		26.693	1.1189	1	1925500	+		17449	19374	12177	12202	19574;19575	19574					0.11296331713219843
FRLNVSSV	8	Unmodified	_FRLNVSSV_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.2608947753906	2	461.261259	920.507966	-0.21412	-9.8763E-05	0.16545	7.6316E-05	-0.048666	-2.2448E-05	461.26122148638075	29.258	0.67506	29.109	28.826	29.501	-0.14952					25	15	2	0	0	0	0.91239	1	1762	1762		50.025	0	1	926460	+		17450	21310	12178	12203	19576	19576					0.044532046173458184
FRLRTASLT	9	Unmodified	_FRLRTASLT_					0	0	0		ENST00000306862.6_1_5:43509468-43515051:-|nuORF	ENST00000306862.6_1_5:43509468-43515051:-|nuORF	ENST00000306862.6_1_5:43509468-43515051:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7926025390625	2	532.81419	1063.61383	-1.0453	-0.00055695	0.64178	0.00034195	-0.40352	-0.000215	532.8143103090048	44.209	0.31406	44.104	43.925	44.239	-0.10468					12	8	2	0	0	0	0.024477	1	4126	4126		27.882	5.9224	1	132210			17451	12004	12179	12204	19577	19577					0.08456540462793782
FRLRTASLT	9	Unmodified	_FRLRTASLT_					0	0	0		ENST00000306862.6_1_5:43509468-43515051:-|nuORF	ENST00000306862.6_1_5:43509468-43515051:-|nuORF	ENST00000306862.6_1_5:43509468-43515051:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.81419	1063.61383	-1.4789	-0.000788	0.51748	0.00027572	-0.96146	-0.00051228	532.8142157601726	43.73	0.28876	43.73	43.621	43.91	0	-0.19973	-0.0001232	NaN	27.882	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58068			17452	12004	12179	12204							0.08456540462793782
FRLRTASLT	9	Unmodified	_FRLRTASLT_					0	0	0		ENST00000306862.6_1_5:43509468-43515051:-|nuORF	ENST00000306862.6_1_5:43509468-43515051:-|nuORF	ENST00000306862.6_1_5:43509468-43515051:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.81419	1063.61383	-1.3269	-0.000707	0.50043	0.00026664	-0.82648	-0.00044036	532.8143628732101	43.95	0.31805	43.806	43.639	43.958	-0.14471	-0.12386	-0.00014137	NaN	27.882	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93038			17453	12004	12179	12204							0.08456540462793782
FRLTEIKTL	9	Unmodified	_FRLTEIKTL_					0	0	0			REV__ENSG00000181965|ENST00000314744|NEUROG1	REV__ENSG00000181965|ENST00000314744|NEUROG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7855224609375	2	560.839874	1119.66519	-0.12598	-7.0654E-05	-1.0632	-0.00059628	-1.1892	-0.00066693	560.8390979279264	67.914	0.44232	67.676	67.508	67.951	-0.23814					17	10	2	0	0	0	0.023835	1	7824	7824		80.455	24.021	1	205680	+		17454	27440	12180	12205	19578	19578					0.11014864436856442
FRMRLAEV	8	Unmodified	_FRMRLAEV_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.3061828613281	2	511.284211	1020.55387	-0.49569	-0.00025344	3.4366	0.0017571	2.9409	0.0015036	511.28580947025813	66.076	0.62725	65.825	65.644	66.271	-0.25112					18	15	2	0	0	0	0.027866	1	7573	7573		40.573	21.213	1	113790			17455	9098	12181	12206	19579	19579					0.044415265279099
FRMRLAEV	8	Unmodified	_FRMRLAEV_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.284211	1020.55387	-0.21238	-0.00010859	4.101	0.0020968	3.8886	0.0019882	511.28602315475155	66.159	0.67323	65.918	65.665	66.338	-0.24145	0.029201	-3.5263E-05	NaN	40.573	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113550			17456	9098	12181	12206							0.044415265279099
FRMRLAEV	8	Unmodified	_FRMRLAEV_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.284211	1020.55387	-0.79666	-0.00040732	4.9214	0.0025162	4.1247	0.0021089	511.2860875339303	66.136	0.74928	65.923	65.629	66.378	-0.21327	0.034419	0.0008037	NaN	40.573	21	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116260			17457	9098	12181	12206							0.044415265279099
FRNGLGNQL	9	Unmodified	_FRNGLGNQL_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7749328613281	2	509.775065	1017.53558	-1.2461	-0.00063521	1.0189	0.00051941	-0.22716	-0.0001158	509.77519940484495	44.297	0.74668	44.297	43.91	44.657	0					52	21	4	0	0	0	0.047345	2	4217	4217;4229		129.68	36.487	1	4482900			17458	5848	12182	12207	19580;19581	19580					0.027511078775773967
FRNGLGNQL	9	Unmodified	_FRNGLGNQL_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.77459716796875	2	509.775065	1017.53558	-1.3104	-0.00066803	0.9099	0.00046384	-0.40053	-0.00020418	509.77530320623396	44.483	0.56665	44.338	44.065	44.632	-0.14471					49	16	4	0	0	0	0.022311	1	4234	4234		147.69	30.79	1	3739500			17459	5848	12182	12207	19582	19582					0.027511078775773967
FRNGLGNQL	9	Unmodified	_FRNGLGNQL_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7752380371094	2	509.775065	1017.53558	-0.49176	-0.00025069	0.55296	0.00028188	0.0612	3.1198E-05	509.77497826010733	44.362	1.0647	44.399	44.176	45.24	0.0369					59	30	4	0	0	0	0.096521	1	4178	4178		111.65	1.5284	1	3563400			17460	5848	12182	12207	19583	19583					0.027511078775773967
FRNGLGNQL	9	Unmodified	_FRNGLGNQL_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7741394042969	2	509.775065	1017.53558	-0.8761	-0.00044662	-0.11299	-5.7601E-05	-0.9891	-0.00050422	509.7749599848224	44.437	1.2619	44.332	43.853	45.115	-0.10468					100	33	6	0	0	0	0.028071	4	4157	4136;4145;4157;4169		143.11	49.911	1	9117000			17461	5848	12182	12207	19584;19585;19586;19587	19586					0.027511078775773967
FRNGLGNQL	9	Unmodified	_FRNGLGNQL_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.7745666503906	2	509.775065	1017.53558	-0.94689	-0.0004827	-0.16805	-8.5669E-05	-1.1149	-0.00056837	509.77501619806185	44.626	1.116	44.382	44.115	45.231	-0.2444					67	29	4	0	0	0	0.039744	2	4163	4163;4175		133.81	40.617	1	8761000			17462	5848	12182	12207	19588;19589	19588					0.027511078775773967
FRNGLGNQL	9	Unmodified	_FRNGLGNQL_					0	0	0		nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.7741394042969	2	509.775065	1017.53558	-1.0479	-0.00053419	-0.080853	-4.1217E-05	-1.1287	-0.00057541	509.77505654944304	44.629	1.0026	44.417	44.15	45.153	-0.21109					69	26	4	0	0	0	0.06122	4	4179	4146;4156;4168;4179		124.59	31.399	1	8707800			17463	5848	12182	12207	19590;19591;19592;19593	19593					0.027511078775773967
FRNLHLVLI	9	Unmodified	_FRNLHLVLI_					0	0	0			REV__ENSG00000143258|ENST00000368002|USP21	REV__ENSG00000143258|ENST00000368002|USP21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.7337646484375	2	562.850576	1123.6866	-0.11003	-6.1933E-05	0.29402	0.00016549	0.18399	0.00010356	563.3523625223223	78.431	0.42839	78.275	78.085	78.514	-0.15591					14	9	2	0	0	0	0.024412	1	9373	9373		40.573	8.6178	1	85318	+		17464	24218	12183	12208	19594	19594					0.12970294256228954
FRNLHLVLI	9	Unmodified	_FRNLHLVLI_					0	0	0			REV__ENSG00000143258|ENST00000368002|USP21	REV__ENSG00000143258|ENST00000368002|USP21	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	562.850576	1123.6866	0.00041402	2.3303E-07	1.0002	0.00056294	1.0006	0.00056318	562.8501382406849	78.7	0.29414	78.507	78.339	78.633	-0.19211	0.13171	0.0009574	NaN	31.955	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52031	+		17465	24218	12183	12208							0.12970294256228954
FRNRRFKLKKQ	11	Unmodified	_FRNRRFKLKKQ_					0	0	0		ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8368835449219	3	507.647671	1519.92118	-0.32006	-0.00016248	-2.362	-0.0011991	-2.6821	-0.0013616	507.64635486816235	17.645	0.29944	17.439	17.315	17.614	-0.20669					8	5	2	0	0	0	0.024873	1	208	208		9.6461	2.9865	1	23290			17466	9512	12184	12209	19595	19595					0.18201985064638393
FRNYNAKT	8	Unmodified	_FRNYNAKT_					0	0	0		nc|ENSG00000149557|Q99689-2|FEZ1;ENST00000532981.1_1_11:125333376-125359673:-|nuORF;ENST00000392709.8_1_11:125325619-125359673:-|nuORF;ENSG00000149557|ENST00000278919|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.28021240234375	2	507.261791	1012.50903	-0.071907	-3.6475E-05	-2.6926	-0.0013659	-2.7646	-0.0014024	507.25911963687213	50.13	0.5452	49.978	49.52	50.065	-0.1512					20	14	2	0	0	0	0.027866	1	5161	5161		53.351	32.405	1	247750			17467	6100	12185	12210	19596	19596					0.0032741898621679866
FRNYNAKT	8	Unmodified	_FRNYNAKT_					0	0	0		nc|ENSG00000149557|Q99689-2|FEZ1;ENST00000532981.1_1_11:125333376-125359673:-|nuORF;ENST00000392709.8_1_11:125325619-125359673:-|nuORF;ENSG00000149557|ENST00000278919|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.261791	1012.50903	0.21434	0.00010873	-9.5048	-0.0048214	-9.2905	-0.0047127	507.25703885978027	50.163	0.26851	49.983	49.826	50.094	-0.18071	0.0021609	-0.0064022	NaN	44.117	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54486			17468	6100	12185	12210							0.0032741898621679866
FRPEPVFS	8	Unmodified	_FRPEPVFS_					0	0	0			REV__CSMD3|p.S1880F|1|0.29|ENSG00000164796|chr8:112406694-112406694|G/A|missense_variant	REV__CSMD3|p.S1880F|1|0.29|ENSG00000164796|chr8:112406694-112406694|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.75616455078125	2	489.75581	977.497067	1.6722	0.00081899	-0.6965	-0.00034112	0.97574	0.00047788	489.7553395939245	19.741	1.5136	19.807	19.587	21.101	0.066195					71	30	4	0	0	0	0.97794	1	420	420		40.778	1.972	1	617300	+		17469	19620	12186	12211	19597	19597					0.007418022430556448
FRPRLPFL	8	Unmodified	_FRPRLPFL_					0	0	0		ENST00000584471.5_1_17:65375098-65375356:+|nuORF	ENST00000584471.5_1_17:65375098-65375356:+|nuORF	ENST00000584471.5_1_17:65375098-65375356:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7716674804688	2	523.318912	1044.62327	0.36462	0.00019081	-3.867	-0.0020237	-3.5023	-0.0018328	523.3189030690103	72.445	0.62962	72.18	71.881	72.511	-0.26479					38	14	4	0	0	0	0.027866	1	8531	8531		42.474	14.22	1	143280			17470	17206	12187	12212	19598	19598					0.1027435353898909
FRPSNDNKDL	10	Unmodified	_FRPSNDNKDL_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5364074707031	3	402.53516	1204.58365	1.2683	0.00051055	2.029	0.00081674	3.2973	0.0013273	402.5359425443809	32.762	0.85808	32.57	32.205	33.063	-0.19261					44	20	3	0	0	0	0.93809	1	2297	2297		51.528	0	1	3249000	+		17471	29234	12188	12213	19599	19599					-0.010458629930553798
FRQLDVEFFSF	11	Unmodified	_FRQLDVEFFSF_					0	0	0			REV__ENST00000559169.1_1_15:101109445-101112292:-|nuORF	REV__ENST00000559169.1_1_15:101109445-101112292:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7815856933594	3	478.906594	1433.69795	-0.0094974	-4.5484E-06	-2.8984	-0.0013881	-2.9079	-0.0013926	479.23947944269975	57.73	0.34196	57.54	57.332	57.674	-0.19018					13	8	2	0	0	0	0.024834	1	6325	6325		23.378	0.81632	1	208630	+		17472	35114	12189	12214	19600	19600					-0.0015497323099680216
FRRKVRHLLQT	11	Unmodified	_FRRKVRHLLQT_					0	0	0			REV__ENSG00000255181|ENST00000542437|CCDC166	REV__ENSG00000255181|ENST00000542437|CCDC166	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.6368713378906	3	485.300271	1452.87898	4.2005	0.0020385	0.64878	0.00031485	4.8492	0.0023533	485.3006231361926	17.696	1.5837	17.446	17.179	18.763	-0.25049					78	31	4	0	0	0	1.09	1	185	185		14.086	1.1285	1	299890	+		17473	29063	12190	12215	19601	19601					0.17066009656264214
FRRLGYVS	8	Unmodified	_FRRLGYVS_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF;nc|ENSG00000116198|O60308-2|CEP104	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.761474609375	2	499.282526	996.550499	-0.59809	-0.00029861	0.6626	0.00033083	0.064517	3.2212E-05	499.28213393459856	52.356	0.7505	52.237	52.011	52.761	-0.11875					30	18	2	0	0	0	0.027866	1	5449	5449		30.504	0	1	181940			17474	3532	12191	12216	19602	19602					0.052085997455719735
FRRLSQSLTN	10	Unmodified	_FRRLSQSLTN_					0	0	0			REV__ENST00000490395.5_1_17:15880973-15881216:-|nuORF	REV__ENST00000490395.5_1_17:15880973-15881216:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.8948059082031	3	407.894799	1220.66257	0.20986	8.5599E-05	-0.12232	-4.9895E-05	0.087532	3.5704E-05	407.8947322492151	75.363	1.0056	75.104	74.779	75.784	-0.25866					57	24	4	0	0	0	1.0461	1	8912	8912		39.873	4.6949	1	1378700	+		17475	33699	12192	12217	19603	19603					0.06106409031917792
FRRRRARKKT	10	Unmodified	_FRRRRARKKT_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;CCPG1|p.L321Yfs*8|1|0.09|ENSG00000260916|chr15:55360813-55360813|G/-|frameshift_variant;nc|ENSG00000260916|Q9ULG6-3|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;ENST00000568808.5_1_15:55653104-55669251:-|nuORF	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2694091796875	3	458.96036	1373.85925	0.15322	7.032E-05	3.1995	0.0014685	3.3527	0.0015388	459.2962583378418	36.54	0.3945	36.54	36.37	36.764	0					17	10	2	0	0	0	0.03519	1	2937	2937		6.6596	6.3968	1	47619			17476	10946	12193	12218	19604	19604					0.1872767843613019
FRRSLRTWKLR	11	Unmodified	_FRRSLRTWKLR_					0	0	0		ENST00000479169.5_1_2:242178189-242179063:-|nuORF	ENST00000479169.5_1_2:242178189-242179063:-|nuORF	ENST00000479169.5_1_2:242178189-242179063:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.81915283203125	3	506.975788	1517.90553	0.3135	0.00015894	-2.1371	-0.0010834	-1.8236	-0.0009245	506.9755624344938	22.982	0.41989	22.78	22.453	22.873	-0.20193					11	8	2	0	0	0	0.024872	1	865	865		15.921	9.9196	1	14523			17477	15165	12194	12219	19605	19605					0.16729698547601402
FRRSQRRNIPR	11	Unmodified	_FRRSQRRNIPR_					0	0	0			REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.9585876464844	3	495.958908	1484.85489	0.046058	2.2843E-05	0.31252	0.000155	0.35858	0.00017784	495.9587070757246	102.16	1.6578	102.16	101.55	103.21	0					119	38	5	0	0	0	1.0811	1	13113	13113		16.53	1.8362	1	937260	+		17478	32462	12195	12220	19606	19606					0.13186169222603894
FRRSQRRNIPR	11	Unmodified	_FRRSQRRNIPR_					0	0	0			REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.9590759277344	3	495.958908	1484.85489	-0.078839	-3.9101E-05	-0.31246	-0.00015497	-0.3913	-0.00019407	495.9587845255512	102.1	1.6695	102.11	101.47	103.14	0.0073471					102	39	3	0	0	0	1.0855	1	13086	13086		15.337	3.8829	1	776030	+		17479	32462	12195	12220	19607	19607					0.13186169222603894
FRRTRERYGLI	11	Unmodified	_FRRTRERYGLI_					0	0	0			REV__ENST00000448692.5_1_X:15693836-15706868:+|nuORF	REV__ENST00000448692.5_1_X:15693836-15706868:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.324951171875	3	489.616148	1465.82661	4.2241	0.0020682	-1.0351	-0.00050682	3.189	0.0015614	489.6157015148478	17.844	0.49554	17.594	17.421	17.916	-0.25049					16	9	3	0	0	0	0.024879	1	207	207		12.957	3.3113	1	22224	+		17480	32658	12196	12221	19608	19608					0.11233426522653644
FRRTVSKSI	9	Unmodified	_FRRTVSKSI_					0	0	0		nc|ENSG00000143257|Q14994-15|NR1I3;nc|ENSG00000143257|Q14994-7|NR1I3;nc|ENSG00000143257|Q14994-3|NR1I3;nc|ENSG00000143257|Q14994-12|NR1I3;nc|ENSG00000143257|Q14994-13|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3	nc|ENSG00000143257|Q14994-15|NR1I3	nc|ENSG00000143257|Q14994-15|NR1I3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3272705078125	2	547.327465	1092.64038	-0.64979	-0.00035565	0.25328	0.00013863	-0.39651	-0.00021702	547.3275145364661	57.364	0.92535	57.364	56.678	57.603	0					70	25	4	0	0	0	0.70156	1	6472	6472		45.972	1.8554	1	5111200			17481	5625	12197	12222	19609	19609					0.09776229354133648
FRRVKLEVF	9	Unmodified	_FRRVKLEVF_					0	0	0			REV__ENST00000331327.4_1_5:139495366-139495495:+|nuORF	REV__ENST00000331327.4_1_5:139495366-139495495:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.3595581054688	2	597.361308	1192.70806	-1.2192	-0.0007283	-3.3662	-0.0020109	-4.5854	-0.0027391	597.3590702861352	98.599	1.5555	98.599	98.19	99.746	0					99	35	4	0	0	0	0.96906	1	12603	12603		26.693	2.4902	1	2988700	+		17482	30472	12198	12223	19610	19610					0.11941679284950624
FRSGGSRSF	9	Unmodified	_FRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.75201416015625	2	500.75159	999.488627	-0.60057	-0.00030074	0.40511	0.00020286	-0.19547	-9.7881E-05	500.7517749098923	25.88	0.59291	25.644	25.385	25.977	-0.23603					34	14	4	0	0	0	0.53979	1	1277	1277		56.721	14.247	1	1503900		+	17483	520;569;17808	12199	12224	19611	19611					-0.011137516735630015
FRSGGSRSF	9	Unmodified	_FRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7501525878906	2	500.75159	999.488627	-0.61951	-0.00031022	0.60482	0.00030287	-0.014686	-7.3539E-06	500.75176386631733	35.952	1.4085	35.747	35.506	36.915	-0.20518					93	37	4	0	0	0	0.2101	4	2761	2761;2773;2785;2797		87.696	32.932	1	7876800		+	17484	520;569;17808	12199	12224	19612;19613;19614;19615	19612					-0.011137516735630015
FRSGGSRSF	9	Unmodified	_FRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.752197265625	2	500.75159	999.488627	-0.2706	-0.0001355	-0.12288	-6.1532E-05	-0.39348	-0.00019704	500.7515881040353	25.689	0.54922	25.518	25.288	25.837	-0.17078					28	12	3	0	0	0	0.5973	1	1236	1236		52.937	8.4056	1	1540500		+	17485	520;569;17808	12199	12224	19616	19616					-0.011137516735630015
FRSGGSRSF	9	Unmodified	_FRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7516174316406	2	500.75159	999.488627	-0.10728	-5.3721E-05	0.066199	3.3149E-05	-0.041082	-2.0572E-05	500.7514954478908	35.908	1.6875	35.691	35.391	37.078	-0.21661					106	44	4	0	0	0	0.2101	5	2760	2748;2760;2772;2784;2796		87.696	28.914	1	10265000		+	17486	520;569;17808	12199	12224	19617;19618;19619;19620;19621	19618					-0.011137516735630015
FRSGGSRSF	9	Unmodified	_FRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7510681152344	2	500.75159	999.488627	-0.062406	-3.125E-05	0.023175	1.1605E-05	-0.039231	-1.9645E-05	500.7515312677579	35.782	2.0768	35.584	35.327	37.404	-0.19829					123	54	4	0	0	0	0.2101	5	2722	2712;2722;2734;2757;2769		87.696	27.402	1	16069000		+	17487	520;569;17808	12199	12224	19622;19623;19624;19625;19626	19623					-0.011137516735630015
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;nc|ENSG00000183010|P32322-3|PYCR1	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.8134765625	2	516.813659	1031.61277	-0.35054	-0.00018117	0.052003	2.6876E-05	-0.29854	-0.00015429	516.8136269966008	66.233	0.67323	65.992	65.665	66.338	-0.24144					37	16	3	0	0	0	0.53979	1	7595	7595		56.721	8.8055	1	1040300			17488	5689	12200	12225	19627	19627					0.09822326093899392
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;nc|ENSG00000183010|P32322-3|PYCR1	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.813659	1031.61277	0.3289	0.00016998	-0.60507	-0.00031271	-0.27617	-0.00014273	516.8131438254823	65.914	0.54214	65.914	65.681	66.224	0	-0.05994	-0.00057798	NaN	56.721	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1001600			17489	5689	12200	12225							0.09822326093899392
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;nc|ENSG00000183010|P32322-3|PYCR1	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.813659	1031.61277	-0.22243	-0.00011495	-0.335	-0.00017313	-0.55742	-0.00028808	516.8134490430696	66.253	0.50123	65.972	65.711	66.213	-0.28149	-0.0026583	-0.00029882	NaN	56.721	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	838520			17490	5689	12200	12225							0.09822326093899392
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;nc|ENSG00000183010|P32322-3|PYCR1	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.813659	1031.61277	-0.63104	-0.00032613	0.18283	9.4487E-05	-0.44821	-0.00023164	516.8137439582691	66.005	0.53744	66.035	65.699	66.237	0.030106	0.060737	0.00023641	NaN	56.721	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042900			17491	5689	12200	12225							0.09822326093899392
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;nc|ENSG00000183010|P32322-3|PYCR1	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.813659	1031.61277	-0.52905	-0.00027342	0.20116	0.00010396	-0.32789	-0.00016946	516.8136882975444	66.172	0.66654	65.959	65.712	66.378	-0.21327	-0.015225	0.00025536	NaN	56.721	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	928060			17492	5689	12200	12225							0.09822326093899392
FRSLLINAV	9	Unmodified	_FRSLLINAV_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;nc|ENSG00000183010|P32322-3|PYCR1	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.813659	1031.61277	-0.36151	-0.00018683	-0.095503	-4.9357E-05	-0.45702	-0.00023619	516.8136192602079	66.219	0.65974	65.974	65.691	66.351	-0.24517	-0.0001236	-5.1276E-05	NaN	56.721	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	952460			17493	5689	12200	12225							0.09822326093899392
FRSNGVQLL	9	Unmodified	_FRSNGVQLL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000557212.5_1_15:91479504-91485975:+|nuORF;ENST00000486253.1_1_15:91479504-91483847:+|nuORF;ENST00000553671.6_1_15:91478554-91486156:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2918090820312	2	517.293091	1032.57163	-0.51783	-0.00026787	0.10758	5.565E-05	-0.41025	-0.00021222	517.2928557775653	54.732	0.55849	54.586	54.353	54.911	-0.14609					37	14	4	0	0	0	0.51687	1	5827	5827		58.23	4.8785	1	2594000			17494	5425	12201	12226	19628	19628					0.05664565054439663
FRSVVNSSD	9	Unmodified	_FRSVVNSSD_					0	0	0			REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7493896484375	2	505.748713	1009.48287	-0.72083	-0.00036456	0.60475	0.00030585	-0.11608	-5.8709E-05	505.74890201263025	26.724	0.94355	26.805	26.414	27.357	0.081291					71	23	6	0	0	0	0.6504	1	1322	1322		49.442	1.7842	1	2170600	+		17495	21484	12202	12227	19629	19629					-0.021488949758918352
FRTSTHLN	8	Unmodified	_FRTSTHLN_					0	0	0		ENSG00000160961|ENST00000292530|ZNF333	ENSG00000160961|ENST00000292530|ZNF333	ENSG00000160961|ENST00000292530|ZNF333	MSMS	OPSCC_39_ClassI_Rep-1	1	488.2541198730469	2	488.253966	974.493378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.23	1	29.23	28.73	29.73	0								0	0	0	0.42824	1	1772	1772		63.306	1.1989	1				17496	6853	12203	12228	19630	19630					0.005111324691938535
FRVGMKINS	9	Unmodified	_FRVGMKINS_					0	0	0			REV__ENSG00000161243|ENST00000292853|FBXO27	REV__ENSG00000161243|ENST00000292853|FBXO27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3150024414062	2	526.289494	1050.56443	-1.1097	-0.00058404	-3.8688	-0.0020361	-4.9785	-0.0026201	526.2873778909471	68.901	0.61855	68.64	68.424	69.043	-0.26165					33	14	3	0	0	0	0.024541	1	8016	8016		21.96	0	1	420300	+		17497	25378	12204	12229	19631	19631					0.04117509182333379
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2904663085938	2	531.290548	1060.56654	0.1058	5.6208E-05	-0.32162	-0.00017088	-0.21583	-0.00011467	531.2902579338507	55.31	1.3102	55.31	54.794	56.104	0					81	36	4	0	0	0	0.057894	3	6094	6083;6094;6106		125.81	24.213	1	12561000			17498	7065	12205	12230	19632;19633;19634	19633					0.03868261191814781
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.2909545898438	2	531.290548	1060.56654	-0.47484	-0.00025228	0.39068	0.00020756	-0.084158	-4.4712E-05	531.2906027158964	55.378	1.1805	55.225	54.818	55.998	-0.1524					83	32	5	0	0	0	0.043667	3	6071	6071;6083;6094		131.03	23.172	1	12678000			17499	7065	12205	12230	19635;19636;19637	19635					0.03868261191814781
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2906494140625	2	531.290548	1060.56654	-0.92718	-0.0004926	0.85038	0.0004518	-0.076798	-4.0802E-05	531.2908668986629	55.007	0.9746	55.105	54.807	55.782	0.098015					72	26	4	0	0	0	0.057894	2	5969	5969;5981		125.81	24.213	1	13779000			17500	7065	12205	12230	19638;19639	19638					0.03868261191814781
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.290283203125	2	531.290548	1060.56654	-0.92811	-0.0004931	0.16367	8.6955E-05	-0.76444	-0.00040614	531.2905865054025	55.285	1.1061	55.139	54.837	55.943	-0.14609					104	30	4	0	0	0	0.021872	7	5944	5896;5908;5920;5932;5944;5956;5969		148.04	24.213	1	46224000			17501	7065	12205	12230	19640;19641;19642;19643;19644;19645;19646	19644					0.03868261191814781
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.289794921875	2	531.290548	1060.56654	-0.63628	-0.00033805	-0.359	-0.00019074	-0.99528	-0.00052878	531.2903080935488	55.374	1.2754	55.143	54.748	56.023	-0.23087					107	35	4	0	0	0	0.027092	8	5937	5913;5925;5937;5949;5961;5974;5988;6001		143.89	30.475	1	52376000			17502	7065	12205	12230	19647;19648;19649;19650;19651;19652;19653;19654	19649					0.03868261191814781
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.289794921875	2	531.290548	1060.56654	-0.43125	-0.00022912	-0.50431	-0.00026794	-0.93557	-0.00049706	531.2902375459495	55.336	1.3014	55.13	54.866	56.168	-0.20639					104	35	4	0	0	0	0.033448	8	5931	5896;5907;5919;5931;5943;5955;5967;5981		138.83	25.414	1	49653000			17503	7065	12205	12230	19655;19656;19657;19658;19659;19660;19661;19662	19658					0.03868261191814781
FRVSGDAL	8	Unmodified	_FRVSGDAL_					0	0	0			REV__ENSG00000132702|ENST00000255039|HAPLN2	REV__ENSG00000132702|ENST00000255039|HAPLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7323303222656	2	432.732335	863.450116	-0.40584	-0.00017562	0.68413	0.00029605	0.2783	0.00012043	432.73249963669883	33.5	0.72097	33.506	33.043	33.764	0.0066261					43	19	3	0	0	0	0.47665	1	2417	2417		87.754	5.4493	1	1385100	+		17504	23312	12206	12231	19663	19663					0.012929426919072284
FRVSGDAL	8	Unmodified	_FRVSGDAL_					0	0	0			REV__ENSG00000132702|ENST00000255039|HAPLN2	REV__ENSG00000132702|ENST00000255039|HAPLN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	432.732335	863.450116	-0.31653	-0.00013697	0.56012	0.00024238	0.24359	0.00010541	432.7324158738542	33.641	0.83634	33.641	33.096	33.932	0	0.099042	0.00017308	NaN	87.754	50	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1313900	+		17505	23312	12206	12231							0.012929426919072284
FRVSGDAL	8	Unmodified	_FRVSGDAL_					0	0	0			REV__ENSG00000132702|ENST00000255039|HAPLN2	REV__ENSG00000132702|ENST00000255039|HAPLN2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	432.732335	863.450116	-0.40584	-0.00017562	0.68413	0.00029605	0.2783	0.00012043	432.73249963669883	33.5	0.72097	33.506	33.043	33.764	0.0066261	-0.035914	0.00028041	NaN	87.754	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385100	+		17506	23312	12206	12231							0.012929426919072284
FRVVVGGE	8	Unmodified	_FRVVVGGE_					0	0	0			REV__ENSG00000164484|ENST00000296978|TMEM200A	REV__ENSG00000164484|ENST00000296978|TMEM200A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.8885192871094	2	431.742702	861.470852	0.66092	0.00028535	3.4277	0.0014799	4.0886	0.0017652	431.74414937969857	21.695	0.66621	21.518	21.162	21.828	-0.17721					34	13	4	0	0	0	0.027866	1	714	714		40.573	1.7665	1	240840	+		17507	25759	12207	12232	19664	19664					0.03457533071582475
FRWLTSLSQ	9	Unmodified	_FRWLTSLSQ_					0	0	0			REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.84619140625	2	569.306198	1136.59784	-1.7562	-0.00099982	-2.1037	-0.0011976	-3.8599	-0.0021974	569.3047903070654	38.269	0.60214	38.269	38.037	38.639	0					36	16	3	0	0	0	0.024319	1	3237	3237		47.657	6.8792	1	858960	+		17508	32679	12208	12233	19665	19665					0.035008342259061465
FRWLTSLSQ	9	Unmodified	_FRWLTSLSQ_					0	0	0			REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.8457641601562	2	569.306198	1136.59784	-0.99266	-0.00056513	-2.9957	-0.0017054	-3.9883	-0.0022706	569.3043464781804	38.192	0.83321	38.109	37.848	38.682	-0.082516					42	22	3	0	0	0	0.024367	1	3233	3233		52.937	20.124	1	752890	+		17509	32679	12208	12233	19666	19666					0.035008342259061465
FRWLTSLSQ	9	Unmodified	_FRWLTSLSQ_					0	0	0			REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.8453979492188	2	569.306198	1136.59784	-2.359	-0.001343	-1.4854	-0.00084562	-3.8443	-0.0021886	569.3051766389174	38.367	0.72556	38.395	38.197	38.923	0.027275					42	19	3	0	0	0	0.024319	1	3218	3218		56.721	15.943	1	774680	+		17510	32679	12208	12233	19667	19667					0.035008342259061465
FSAEQIAR	8	Unmodified	_FSAEQIAR_					0	0	0		ENST00000476168.1_1_X:77112151-77150907:-|nuORF;ENSG00000102158|ENST00000618282|MAGT1	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.75909423828125	2	461.243067	920.47158	0.43376	0.00020007	0.074699	3.4454E-05	0.50846	0.00023452	461.24298856383876	37.368	1.2095	37.4	36.506	37.715	0.032269					50	31	3	0	0	0	0.027866	1	2863	2863		18.324	0	1	402040			17511	2387	12209	12234	19668	19668					0.00816327720622212
FSAEQIAR	8	Unmodified	_FSAEQIAR_					0	0	0		ENST00000476168.1_1_X:77112151-77150907:-|nuORF;ENSG00000102158|ENST00000618282|MAGT1	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	461.243067	920.47158	0.13544	6.2472E-05	2.6176	0.0012074	2.7531	0.0012698	461.24341979959115	37.456	0.50269	37.263	36.927	37.43	-0.193	-0.033407	0.0023241	NaN	7.1934	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67316			17512	2387	12209	12234							0.00816327720622212
FSAEQIAR	8	Unmodified	_FSAEQIAR_					0	0	0		ENST00000476168.1_1_X:77112151-77150907:-|nuORF;ENSG00000102158|ENST00000618282|MAGT1	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	461.243067	920.47158	-1.0883	-0.00050195	4.1536	0.0019158	3.0654	0.0014139	461.24322347824085	37.435	0.50695	37.215	36.999	37.506	-0.2195	-0.081287	0.003741	NaN	7.1934	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93307			17513	2387	12209	12234							0.00816327720622212
FSAKGIVLALV	11	Unmodified	_FSAKGIVLALV_					0	0	0		ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.3338012695312	2	559.352617	1116.69068	-1.5476	-0.00086563	2.1429	0.0011986	0.59534	0.00033301	559.3542401951983	51.834	0.29056	51.565	51.4	51.691	-0.26903					16	7	3	0	0	0	0.024727	1	5356	5356		24.519	11.56	1	293540			17514	5344	12210	12235	19669	19669					0.13700338959256442
FSAKRLVSILN	11	Unmodified	_FSAKRLVSILN_					0	0	0		ENSG00000268738|ENST00000598963|HSFX2;ENSG00000171116|ENST00000370416|HSFX1	ENSG00000268738|ENST00000598963|HSFX2	ENSG00000268738|ENST00000598963|HSFX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.3760375976562	2	624.377155	1246.73976	0.70575	0.00044065	3.4838	0.0021752	4.1896	0.0026159	624.3791936410059	100.71	0.53059	100.58	100.28	100.81	-0.13364					27	14	2	0	0	0	1.0392	1	12505	12505		28.081	1.3886	1	344240			17515	8114	12211	12236	19670	19670					0.12625627248235105
FSALQGNSL	9	Unmodified	_FSALQGNSL_					0	0	0		ENST00000315249.11_1_17:33338774-33338990:-|nuORF	ENST00000315249.11_1_17:33338774-33338990:-|nuORF	ENST00000315249.11_1_17:33338774-33338990:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2689514160156	2	468.742899	935.471246	-0.67115	-0.0003146	-1.934	-0.00090655	-2.6052	-0.0012212	468.74188432356925	60.683	0.41211	60.683	60.509	60.921	0					16	10	2	0	0	0	0.024323	1	6964	6964		35.618	18.253	1	136680			17516	12132	12212	12237	19671	19671					0.0009290800077224048
FSALQGNSL	9	Unmodified	_FSALQGNSL_					0	0	0		ENST00000315249.11_1_17:33338774-33338990:-|nuORF	ENST00000315249.11_1_17:33338774-33338990:-|nuORF	ENST00000315249.11_1_17:33338774-33338990:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.742899	935.471246	-0.33528	-0.00015716	-1.1553	-0.00054153	-1.4906	-0.00069869	468.7417176410047	60.887	0.30627	60.674	60.567	60.873	-0.21339	-0.0048149	0.0004309	NaN	35.618	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173540			17517	12132	12212	12237							0.0009290800077224048
FSARILHIN	9	Unmodified	_FSARILHIN_					0	0	0			REV__ENST00000556832.1_1_14:67227553-67227694:+|nuORF	REV__ENST00000556832.1_1_14:67227553-67227694:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.812255859375	2	535.808908	1069.60326	2.3194	0.0012427	4.4883	0.0024049	6.8077	0.0036476	535.8110893122501	19.205	0.59289	19.271	19.044	19.637	0.066193					25	11	3	0	0	0	0.67687	1	355	355		47.657	6.8792	1	171430	+		17518	35048	12213	12238	19672	19672					0.07124557808401732
FSARILHIN	9	Unmodified	_FSARILHIN_					0	0	0			REV__ENST00000556832.1_1_14:67227553-67227694:+|nuORF	REV__ENST00000556832.1_1_14:67227553-67227694:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	535.808908	1069.60326	0.96749	0.00051839	5.5229	0.0029592	6.4903	0.0034776	535.8117613595007	19.041	0.54282	19.041	18.823	19.366	0	-0.088473	-0.00037966	NaN	47.657	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227460	+		17519	35048	12213	12238							0.07124557808401732
FSARILHIN	9	Unmodified	_FSARILHIN_					0	0	0			REV__ENST00000556832.1_1_14:67227553-67227694:+|nuORF	REV__ENST00000556832.1_1_14:67227553-67227694:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	535.808908	1069.60326	2.3194	0.0012427	4.4883	0.0024049	6.8077	0.0036476	535.8110893122501	19.205	0.59289	19.271	19.044	19.637	0.066193	0.14147	-0.0014883	NaN	47.657	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171430	+		17520	35048	12213	12238							0.07124557808401732
FSASTIQLG	9	Unmodified	_FSASTIQLG_					0	0	0			REV__ENSG00000133812|ENST00000256190|SBF2	REV__ENSG00000133812|ENST00000256190|SBF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.7951354980469	2	462.245275	922.475997	0.22463	0.00010383	2.343	0.0010831	2.5677	0.0011869	462.2453863309229	18.589	0.24783	18.386	18.212	18.46	-0.20371					8	4	2	0	0	0	0.024427	1	306	306		42.396	11.892	1	24700	+		17521	23398	12214	12239	19673	19673					0.011657921435244134
FSATQTRKV	9	Unmodified	_FSATQTRKV_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;ENST00000534547.1_1_11:130165680-130166253:+|nuORF;ENST00000476149.1_1_2:118582113-118584081:+|nuORF	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2410888671875	2	519.290548	1036.56654	-0.59745	-0.00031025	-1.0636	-0.00055231	-1.661	-0.00086256	519.2897457958998	26.257	0.48553	26.234	26.042	26.527	-0.023088					15	11	2	0	0	0	0.0242	1	1307	1307		60.118	14.166	1	299040			17522	1862	12215	12240	19674	19674					0.04972261191801408
FSAWLAAS	8	Unmodified	_FSAWLAAS_					0	0	0			REV__ENST00000327835.7_1_8:81552980-81553115:-|nuORF	REV__ENST00000327835.7_1_8:81552980-81553115:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.74853515625	2	426.716153	851.417754	-0.41657	-0.00017776	-3.869	-0.001651	-4.2856	-0.0018287	426.7142971763006	26.592	0.67014	26.356	26.037	26.707	-0.23603					37	17	3	0	0	0	0.027866	1	1368	1368		25.45	1.2474	1	527670	+		17523	30420	12216	12241	19675	19675					-0.01389844711115984
FSCWQVHFFRL	11	Unmodified	_FSCWQVHFFRL_					0	0	0		ENST00000496411.5_1_1:249151692-249152085:-|nuORF	ENST00000496411.5_1_1:249151692-249152085:-|nuORF	ENST00000496411.5_1_1:249151692-249152085:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.57965087890625	3	490.576413	1468.70741	2.786	0.0013668	3.4354	0.0016853	6.2215	0.0030521	490.5781168108718	19.108	1.0727	19.174	18.896	19.969	0.066195					59	21	5	0	0	0	1.0532	1	334	334		24.232	2.4514	1	517360			17524	15568	12217	12242	19676	19676					-0.008194834264486417
FSCWQVHFFRL	11	Unmodified	_FSCWQVHFFRL_					0	0	0		ENST00000496411.5_1_1:249151692-249152085:-|nuORF	ENST00000496411.5_1_1:249151692-249152085:-|nuORF	ENST00000496411.5_1_1:249151692-249152085:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.57965087890625	3	490.576413	1468.70741	1.7438	0.00085547	4.3751	0.0021463	6.1189	0.0030018	490.5786258470849	19.444	1.1338	19.211	18.829	19.963	-0.23345					69	22	5	0	0	0	1.0532	1	417	417		24.232	1.6702	1	1695300			17525	15568	12217	12242	19677	19677					-0.008194834264486417
FSDGRTQKY	9	Unmodified	_FSDGRTQKY_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.2675170898438	2	551.269813	1100.52507	-0.75113	-0.00041408	1.0304	0.00056802	0.27925	0.00015394	551.2699991289035	25.623	1.062	25.452	25.2	26.262	-0.17151					51	28	3	0	0	0	0.70156	1	1213	1213		45.972	0	1	602060			17526	8398	12218	12243	19678	19678					-0.021169195675156516
FSDGRTQKY	9	Unmodified	_FSDGRTQKY_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.269813	1100.52507	-0.728	-0.00040132	0.79622	0.00043893	0.068223	3.7609E-05	551.2701520807932	25.809	0.67544	25.582	25.311	25.986	-0.22717	0.078349	-2.8857E-05	NaN	45.972	31	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	786700			17527	8398	12218	12243							-0.021169195675156516
FSDGRTQKY	9	Unmodified	_FSDGRTQKY_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	551.269813	1100.52507	-0.24761	-0.0001365	0.66867	0.00036862	0.42107	0.00023212	551.2698869742233	25.648	1.1313	25.477	25.205	26.336	-0.17078	-0.026388	-0.00016949	NaN	45.972	56	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	754920			17528	8398	12218	12243							-0.021169195675156516
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.7568969726562	2	588.757069	1175.49959	-0.23368	-0.00013758	0.11322	6.6658E-05	-0.12046	-7.0922E-05	588.7570069137083	21.019	0.67638	20.842	20.533	21.209	-0.17721					38	13	4	0	0	0	0.077175	2	620	620;632		118.74	63.967	1	366580			17529	2270	12219	12244	19679;19680	19679					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.7572021484375	2	588.757069	1175.49959	-0.4779	-0.00028137	0.47377	0.00027894	-0.0041326	-2.4331E-06	588.7572447477487	21.189	0.63782	20.999	20.686	21.324	-0.19072					36	12	4	0	0	0	0.094442	1	634	634		112.41	61.075	1	289260			17530	2270	12219	12244	19681	19681					-0.08114394089966481
FSDHHENKY	9	Unmodified	_FSDHHENKY_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.7568969726562	2	588.757069	1175.49959	-1.7382	-0.0010234	1.6438	0.00096781	-0.094417	-5.5589E-05	588.7579604766912	21.163	0.68921	20.95	20.673	21.363	-0.2128					33	13	4	0	0	0	0.34489	2	618	606;618		69.628	23.655	1	347170			17531	2270	12219	12244	19682;19683	19683					-0.08114394089966481
FSDIHDFEY	9	Unmodified	_FSDIHDFEY_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7481079101562	2	586.748379	1171.4822	-0.42757	-0.00025088	-1.2073	-0.00070836	-1.6348	-0.00095924	586.7468653877306	61.527	1.1305	61.313	60.842	61.972	-0.21375					72	27	4	0	0	0	0.034181	2	6877	6877;6887		138.24	80.431	1	2998000			17532	9877	12220	12245	19684;19685	19684					-0.09667734415597806
FSDIHDFEY	9	Unmodified	_FSDIHDFEY_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.7490234375	2	586.748379	1171.4822	-1.645	-0.00096518	-0.38827	-0.00022782	-2.0332	-0.001193	586.7473613039629	61.362	1.0577	61.185	60.635	61.693	-0.1761					72	25	4	0	0	0	0.06122	3	6856	6856;6869;6882		124.59	61.288	1	2869700			17533	9877	12220	12245	19686;19687;19688	19686					-0.09667734415597806
FSDIHDFEY	9	Unmodified	_FSDIHDFEY_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.7472534179688	2	586.748379	1171.4822	-1.0263	-0.00060217	-0.34951	-0.00020507	-1.3758	-0.00080724	586.7476400247386	61.601	1.2872	61.344	60.809	62.097	-0.25725					71	31	4	0	0	0	0.072054	3	6882	6870;6882;6894		120.62	70.596	1	2779800			17534	9877	12220	12245	19689;19690;19691	19690					-0.09667734415597806
FSDITKAMRA	10	Oxidation (M)	_FSDITKAM(Oxidation (M))RA_		FSDITKAM(1)RA		FSDITKAM(41)RA	0	0	1			REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.2924194335938	2	578.294973	1154.57539	0.64454	0.00037274	-2.8142	-0.0016275	-2.1697	-0.0012547	578.2927912671993	99.091	0.79159	98.956	98.457	99.249	-0.13526					21	19	2	0	0	0	1.0344	1	12262	12262		41.427	10.923	1	149930	+		17535	23436	12221	12246	19692	19692		696			0.004288667659693601
FSDKLSQEP	9	Unmodified	_FSDKLSQEP_					0	0	0			REV__ENSG00000213988|ENST00000418063|ZNF90	REV__ENSG00000213988|ENST00000418063|ZNF90	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.818603515625	2	525.758746	1049.50294	0.51771	0.00027219	-0.97304	-0.00051158	-0.45532	-0.00023939	526.2595038064708	71.392	0.54623	71.103	70.844	71.39	-0.28858					18	13	2	0	0	0	0.024397	1	8603	8603		31.53	0	1	140490	+		17536	28761	12222	12247	19693	19693					-0.019831440359666885
FSDKLSQEP	9	Unmodified	_FSDKLSQEP_					0	0	0			REV__ENSG00000213988|ENST00000418063|ZNF90	REV__ENSG00000213988|ENST00000418063|ZNF90	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.758746	1049.50294	-0.07809	-4.1056E-05	-0.058326	-3.0665E-05	-0.13642	-7.1722E-05	526.2600865570863	71.376	0.67913	71.114	70.602	71.282	-0.26199	0.010718	0.0001767	NaN	24.519	33	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258790	+		17537	28761	12222	12247							-0.019831440359666885
FSDLPFFSV	9	Unmodified	_FSDLPFFSV_					0	0	0			REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2821044921875	2	529.7633	1057.51205	-0.47156	-0.00024981	3.7934	0.0020096	3.3219	0.0017598	529.7650375843813	48.161	0.65074	48.228	47.903	48.553	0.066795					22	17	2	0	0	0	0.024405	1	4854	4854		44.117	27.644	1	195940	+		17538	32436	12223	12248	19694	19694					-0.01440750679626035
FSDLPFFSV	9	Unmodified	_FSDLPFFSV_					0	0	0			REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.7633	1057.51205	-0.82513	-0.00043712	0.76812	0.00040692	-0.057012	-3.0203E-05	529.7633146525392	48.377	0.95398	48.279	47.667	48.621	-0.097553	-0.0092446	-0.00047657	NaN	44.117	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409840	+		17539	32436	12223	12248							-0.01440750679626035
FSDLPFFSV	9	Unmodified	_FSDLPFFSV_					0	0	0			REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.7633	1057.51205	-1.3909	-0.00073685	1.5575	0.00082513	0.16664	8.828E-05	529.7636630334634	48.595	1.1252	48.319	47.928	49.053	-0.27598	0.030168	0.00035984	NaN	44.117	56	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343360	+		17540	32436	12223	12248							-0.01440750679626035
FSDLPFFSV	9	Unmodified	_FSDLPFFSV_					0	0	0			REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	REV__ENST00000435087.1_2_1:154246317-154247633:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.7633	1057.51205	-0.073124	-3.8738E-05	0.64748	0.00034301	0.57435	0.00030427	529.7631007877314	48.48	1.1313	48.298	47.678	48.809	-0.18206	0.0092916	-0.00060439	NaN	44.117	57	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299470	+		17541	32436	12223	12248							-0.01440750679626035
FSDLYNEVY	9	Unmodified	_FSDLYNEVY_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.2587280273438	2	575.258579	1148.50261	0.19314	0.00011111	-0.58143	-0.00033447	-0.38829	-0.00022337	575.2581248899061	71.283	0.77434	71.01	70.701	71.475	-0.27322					51	17	5	0	0	0	0.26966	2	8309	8309;8319		79.713	16.406	1	1619200			17542	1877	12224	12249	19695;19696	19695					-0.0657056375580396
FSDLYNEVY	9	Unmodified	_FSDLYNEVY_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.2589721679688	2	575.258579	1148.50261	-0.23396	-0.00013459	0.095539	5.496E-05	-0.13842	-7.963E-05	575.2583926475883	71.224	0.90787	70.966	70.695	71.603	-0.25713					55	21	4	0	0	0	0.2101	2	8324	8324;8343		87.696	36.361	1	1662300			17543	1877	12224	12249	19697;19698	19697					-0.0657056375580396
FSDLYNEVY	9	Unmodified	_FSDLYNEVY_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.2582397460938	2	575.258579	1148.50261	0.47131	0.00027113	-0.82241	-0.0004731	-0.3511	-0.00020197	575.257923153365	71.126	0.80016	70.916	70.655	71.455	-0.21032					54	18	4	0	0	0	0.34489	1	8293	8293		69.628	7.5202	1	1508800			17544	1877	12224	12249	19699	19699					-0.0657056375580396
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.7615356445312	2	563.76182	1125.50909	-0.37775	-0.00021296	-0.23842	-0.00013441	-0.61617	-0.00034737	563.7616367626523	45.436	0.79812	45.336	45.012	45.81	-0.099449					76	22	5	0	0	0	0.013924	4	4301	4291;4301;4314;4326		167.23	81.869	1	8788800			17545	2568	12225	12250	19700;19701;19702;19703	19701					-0.048646258044072965
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.7620849609375	2	563.76182	1125.50909	-0.060963	-3.4369E-05	-0.55671	-0.00031385	-0.61768	-0.00034822	563.7614405858906	45.647	0.91843	45.394	44.981	45.9	-0.25252					90	25	5	0	0	0	0.015752	4	4338	4315;4325;4338;4351		158.07	67.474	1	8587200			17546	2568	12225	12250	19704;19705;19706;19707	19706					-0.048646258044072965
FSDPERVNY	9	Unmodified	_FSDPERVNY_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.761962890625	2	563.76182	1125.50909	-0.73036	-0.00041175	0.13987	7.8853E-05	-0.5905	-0.0003329	563.7618391145477	45.563	0.9738	45.361	45.031	46.005	-0.20226					79	27	4	0	0	0	0.016542	4	4317	4308;4317;4330;4343		154.12	68.759	1	8914500			17547	2568	12225	12250	19708;19709;19710;19711	19709					-0.048646258044072965
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		NIPBL-WDR70|1|fusion;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2908325195312	2	558.290214	1114.56587	-0.059387	-3.3155E-05	-0.14889	-8.3124E-05	-0.20828	-0.00011628	558.290021814674	32.257	0.75995	32.02	31.697	32.457	-0.23666					28	17	2	0	0	0	0.34489	1	2210	2210		69.628	10.846	1	644250			17548	18873	12226	12251	19712	19712					0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		NIPBL-WDR70|1|fusion;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.290214	1114.56587	0.31899	0.00017809	-0.45288	-0.00025284	-0.13389	-7.475E-05	558.2898619545708	32.303	0.88606	32.11	31.771	32.657	-0.19261	0.057821	-0.00033869	NaN	69.628	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446680			17549	18873	12226	12251							0.01317421752082737
FSDSKIQKY	9	Unmodified	_FSDSKIQKY_					0	0	0		NIPBL-WDR70|1|fusion;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.290214	1114.56587	-0.52268	-0.00029181	0.23886	0.00013335	-0.28383	-0.00015846	558.290207164305	32.185	0.504	32.027	31.819	32.323	-0.15772	-0.025413	0.00043368	NaN	69.628	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586780			17550	18873	12226	12251							0.01317421752082737
FSDVDSPYY	9	Unmodified	_FSDVDSPYY_					0	0	0		ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7300415039062	2	546.729655	1091.44476	-0.285	-0.00015582	0.25934	0.00014179	-0.025662	-1.403E-05	546.7296744470232	61.527	1.1676	61.313	61.001	62.168	-0.21375					67	28	4	0	0	0	0.13494	3	6888	6876;6888;6901		102.77	32.965	1	3201300			17551	8078	12227	12252	19713;19714;19715	19714					-0.09730825681231181
FSDVDSPYY	9	Unmodified	_FSDVDSPYY_					0	0	0		ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.7297973632812	2	546.729655	1091.44476	-0.98521	-0.00053864	0.86823	0.00047469	-0.11698	-6.3957E-05	546.7299458614615	61.438	1.2044	61.262	60.914	62.119	-0.1761					69	29	5	0	0	0	0.11848	3	6880	6870;6880;6894		106.42	55.08	1	3404700			17552	8078	12227	12252	19716;19717;19718	19717					-0.09730825681231181
FSDVDSPYY	9	Unmodified	_FSDVDSPYY_					0	0	0		ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	ENSG00000170779|ENST00000336219|CDCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.729736328125	2	546.729655	1091.44476	-0.69282	-0.00037878	0.49003	0.00026791	-0.20279	-0.00011087	546.729764128591	61.615	1.0474	61.358	61.049	62.097	-0.25725					66	25	4	0	0	0	0.13494	4	6895	6871;6883;6895;6909		102.77	43.982	1	3587700			17553	8078	12227	12252	19719;19720;19721;19722	19721					-0.09730825681231181
FSDVKLKV	8	Unmodified	_FSDVKLKV_					0	0	0			REV__ENSG00000131467|ENST00000590720|PSME3	REV__ENSG00000131467|ENST00000590720|PSME3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.7332763671875	2	468.28166	934.548768	-0.2383	-0.00011159	-0.32354	-0.00015151	-0.56184	-0.0002631	468.2813301132425	33.466	0.38579	33.266	33.056	33.442	-0.20019					15	9	2	0	0	0	0.027866	1	2359	2359		24.203	13.337	1	190590	+		17554	23212	12228	12253	19723	19723					0.07887545936955576
FSDVKLKV	8	Unmodified	_FSDVKLKV_					0	0	0			REV__ENSG00000131467|ENST00000590720|PSME3	REV__ENSG00000131467|ENST00000590720|PSME3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.28166	934.548768	-0.027364	-1.2814E-05	-0.63821	-0.00029886	-0.66557	-0.00031167	468.2813803608041	33.509	0.47882	33.278	33.075	33.554	-0.23107	0.010811	-0.00060413	NaN	24.203	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155530	+		17555	23212	12228	12253							0.07887545936955576
FSDVKLKV	8	Unmodified	_FSDVKLKV_					0	0	0			REV__ENSG00000131467|ENST00000590720|PSME3	REV__ENSG00000131467|ENST00000590720|PSME3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.28166	934.548768	-1.2047	-0.00056413	1.1442	0.00053581	-0.060482	-2.8322E-05	468.2819543839426	33.423	0.36353	33.257	33.038	33.401	-0.16565	-0.0096305	0.0010652	NaN	24.203	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167820	+		17556	23212	12228	12253							0.07887545936955576
FSDVMEDLY	9	Unmodified	_FSDVMEDLY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.7389526367188	2	559.739165	1117.46378	0.38728	0.00021678	-0.38866	-0.00021755	-0.0013717	-7.678E-07	559.7388296635305	79.237	1.2563	78.99	78.609	79.865	-0.2465					82	29	4	0	0	0	0.039744	4	9451	9441;9451;9463;9477		133.81	39.806	1	4127300			17557	7673	12229	12254	19724;19725;19726;19727	19725					-0.09025612381833525
FSDVMEDLY	9	Unmodified	_FSDVMEDLY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.7391357421875	2	559.739165	1117.46378	0.21966	0.00012295	-0.1403	-7.8533E-05	0.079356	4.4419E-05	559.7389844724189	79.15	1.3378	78.93	78.618	79.956	-0.22014					89	31	4	0	0	0	0.034181	4	9460	9450;9460;9472;9485		138.24	22.783	1	4262700			17558	7673	12229	12254	19728;19729;19730;19731	19729					-0.09025612381833525
FSDVMEDLY	9	Unmodified	_FSDVMEDLY_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.7388305664062	2	559.739165	1117.46378	-0.057647	-3.2267E-05	0.023342	1.3065E-05	-0.034305	-1.9202E-05	559.7390668974509	79.078	1.3866	78.928	78.563	79.949	-0.15051					81	32	4	0	0	0	0.028181	4	9432	9422;9432;9444;9458		143.02	36.604	1	4011900			17559	7673	12229	12254	19732;19733;19734;19735	19733					-0.09025612381833525
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.73486328125	2	566.734414	1131.45428	0.58974	0.00033423	3.3542	0.0019009	3.9439	0.0022351	566.7339485283732	59.468	0.8688	59.27	58.969	59.838	-0.19742					48	21	3	0	0	0	0.014034	3	6572	6563;6572;6582		166.68	67.304	1	3740800			17560	18067	12230	12255	19736;19737;19738	19737					-0.10619380667344558
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.73486328125	2	566.734414	1131.45428	0.58708	0.00033272	4.1527	0.0023535	4.7398	0.0026862	566.7339766668019	59.355	0.93615	59.174	58.872	59.808	-0.18134					60	23	4	0	0	0	0.025498	3	6564	6553;6564;6577		145.16	42.382	1	3833800			17561	18067	12230	12255	19739;19740;19741	19740					-0.10619380667344558
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	OPSCC_40_ClassI_Rep-3	6	566.7347412109375	2	566.734414	1131.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.459	1	59.211	58.711	59.711	-0.24842								0	0	0	0.014413	1	6559	6559		145.16	42.382	1				17562	18067	12230	12255	19742	19742					-0.10619380667344558
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	OPSCC_40_ClassI_Rep-3	6	566.7344360351562	2	566.734414	1131.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.535	1	59.286	58.786	59.786	-0.24842								0	0	0	0.010243	1	6570	6570		166.68	61.932	1				17563	18067	12230	12255	19743	19743					-0.10619380667344558
FSDVNMQEY	9	Unmodified	_FSDVNMQEY_					0	0	0		nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	OPSCC_40_ClassI_Rep-3	6	566.7348022460938	2	566.734414	1131.45428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.625	1	59.377	58.877	59.877	-0.24842								0	0	0	0.014251	1	6583	6583		158.07	55.301	1				17564	18067	12230	12255	19744	19744					-0.10619380667344558
FSDYLHPQY	9	Unmodified	_FSDYLHPQY_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.266845703125	2	585.266739	1168.51892	-0.64348	-0.00037661	0.60614	0.00035475	-0.037339	-2.1853E-05	585.2669408110073	56.973	1.1264	56.805	56.52	57.646	-0.1672					89	29	5	0	0	0	0.0089939	4	6198	6187;6198;6209;6224		237.81	149.17	1	6562300			17565	10946	12231	12256	19745;19746;19747;19748	19746					-0.05859437799040279
FSDYLHPQY	9	Unmodified	_FSDYLHPQY_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.2674560546875	2	585.266739	1168.51892	-0.50723	-0.00029686	0.4548	0.00026618	-0.052432	-3.0687E-05	585.2668428927748	57.035	1.067	56.833	56.52	57.587	-0.20208					92	28	4	0	0	0	0.0085264	3	6190	6190;6202;6214		255.13	166.48	1	7180900			17566	10946	12231	12256	19749;19750;19751	19749					-0.05859437799040279
FSDYLHPQY	9	Unmodified	_FSDYLHPQY_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2666015625	2	585.266739	1168.51892	-0.56119	-0.00032844	0.52974	0.00031004	-0.031449	-1.8406E-05	585.2668912690635	57.106	1.0502	56.881	56.582	57.632	-0.2248					88	27	5	0	0	0	0.013293	4	6223	6186;6195;6207;6223		221.33	132.68	1	6707700			17567	10946	12231	12256	19752;19753;19754;19755	19755					-0.05859437799040279
FSDYVSRIFL	10	Unmodified	_FSDYVSRIFL_					0	0	0			REV__nc|ENSG00000204178|Q8N5G2-3|MACO1	REV__nc|ENSG00000204178|Q8N5G2-3|MACO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2457580566406	3	416.220401	1245.63937	-0.75084	-0.00031252	1.7114	0.00071231	0.96054	0.00039979	416.2210253822886	28.034	1.1571	27.865	27.528	28.685	-0.16897					40	27	2	0	0	0	0.03519	1	1697	1697		32.751	1.1163	1	153520	+		17568	28572	12232	12257	19756	19756					0.02637970194564332
FSEATLHEYPQ	11	Unmodified	_FSEATLHEYPQ_					0	0	0			REV__ENSG00000120738|ENST00000239938|EGR1	REV__ENSG00000120738|ENST00000239938|EGR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.8539733886719	3	441.20682	1320.59863	-0.43688	-0.00019275	-2.7544	-0.0012152	-3.1913	-0.001408	441.54001406513913	31.321	1.7064	31.136	30.157	31.864	-0.18503					67	41	2	0	0	0	0.024726	1	2139	2139		32.034	0.96598	1	125470	+		17569	22558	12233	12258	19757	19757					-0.04884415915717
FSEELANLY	9	Unmodified	_FSEELANLY_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2618408203125	2	543.261122	1084.50769	-0.18851	-0.00010241	0.62815	0.00034125	0.43964	0.00023884	543.2609404117974	74.63	0.75702	74.355	74.089	74.846	-0.27573					36	17	3	0	0	0	0.35646	1	8801	8801		68.787	0.30212	1	1195300			17570	185	12234	12259	19758	19758					-0.031182598931764005
FSEELANLY	9	Unmodified	_FSEELANLY_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2630004882812	2	543.261122	1084.50769	-0.071799	-3.9006E-05	0.74888	0.00040684	0.67708	0.00036783	543.2608935662985	74.59	0.71632	74.327	74.142	74.858	-0.26326					39	16	4	0	0	0	0.20967	1	8816	8816		87.754	7.8151	1	1093100			17571	185	12234	12259	19759	19759					-0.031182598931764005
FSEELANLY	9	Unmodified	_FSEELANLY_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.828125	2	543.261122	1084.50769	-0.11136	-6.0495E-05	0.15129	8.2192E-05	0.03994	2.1698E-05	543.2609755069614	74.472	0.71777	74.29	74.049	74.767	-0.18279					34	16	3	0	0	0	0.023635	1	8778	8778		56.721	0	1	1013600			17572	185	12234	12259	19760	19760					-0.031182598931764005
FSEETEKKFE	10	Unmodified	_FSEETEKKFE_					0	0	0		ENSG00000134013|ENST00000389131|LOXL2	ENSG00000134013|ENST00000389131|LOXL2	ENSG00000134013|ENST00000389131|LOXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.74884033203125	3	425.203076	1272.5874	0.46638	0.00019831	0.1286	5.4681E-05	0.59498	0.00025299	425.202801424478	25.97	0.34103	26.05	25.749	26.09	0.08009					9	7	2	0	0	0	0.03519	1	1220	1220		19.263	10.463	1	41372			17573	4744	12235	12260	19761	19761					-0.037992380098330614
FSEHETISFV	10	Unmodified	_FSEHETISFV_					0	0	0			REV__nc|ENSG00000144118|P11234-3|RALB	REV__nc|ENSG00000144118|P11234-3|RALB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	598.26025390625	2	598.285128	1194.5557	-0.9269	-0.00055455	-2.003	-0.0011984	-2.9299	-0.0017529	598.2835509027575	65.011	0.68347	64.776	64.49	65.174	-0.2345					23	16	2	0	0	0	0.03519	1	7385	7385		35.618	13.039	1	350230	+		17574	36743	12236	12261	19762	19762					-0.03379185973153653
FSELDQHPM	9	Unmodified	_FSELDQHPM_					0	0	0		nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3157958984375	2	552.244949	1102.47534	-0.54766	-0.00030244	-0.16802	-9.2787E-05	-0.71568	-0.00039523	552.2446842414154	43.78	1.403	43.675	42.661	44.064	-0.10468					77	37	3	0	0	0	0.024405	1	4057	4057		27.882	6.9353	1	1262500			17575	6284	12237	12262	19763	19763					-0.07179370567814658
FSELTWGTV	9	Unmodified	_FSELTWGTV_					0	0	0			REV__ENST00000591730.5_1_19:36387829-36391404:-|nuORF	REV__ENST00000591730.5_1_19:36387829-36391404:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7536010742188	2	520.258382	1038.50221	-0.35747	-0.00018598	0.20799	0.00010821	-0.14948	-7.7771E-05	520.2584199336571	22.51	0.69353	22.325	21.952	22.646	-0.18539					20	14	2	0	0	0	0.024523	1	755	755		21.96	0	1	170300	+		17576	35728	12238	12263	19764	19764					-0.015499386850024166
FSEMSRAFW	9	Unmodified	_FSEMSRAFW_					0	0	0		ENST00000309957.2_2_13:111279853-111287860:+|nuORF	ENST00000309957.2_2_13:111279853-111287860:+|nuORF	ENST00000309957.2_2_13:111279853-111287860:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	579.7899780273438	2	580.763309	1159.51206	-1.1853	-0.00068839	0.4753	0.00027604	-0.71002	-0.00041235	580.7643131419394	94.68	0.51932	94.68	94.444	94.963	0					16	11	2	0	0	0	0.024517	1	12024	12024		19.36	0	1	62252			17577	12048	12239	12264	19765	19765					-0.06131073951246435
FSEQVAMGY	9	Oxidation (M)	_FSEQVAM(Oxidation (M))GY_		FSEQVAM(1)GY		FSEQVAM(130)GY	0	0	1		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2257690429688	2	524.226225	1046.4379	-0.78683	-0.00041248	0.63163	0.00033111	-0.1552	-8.1361E-05	524.2264376142227	52.418	1.4658	52.299	51.833	53.299	-0.11876					77	37	4	0	0	0	0.057894	3	5453	5441;5453;5465		125.81	54.518	1	4603000			17578	8864	12240	12265	19766;19767;19768	19767		373			-0.08346461833457397
FSEQVAMGY	9	Oxidation (M)	_FSEQVAM(Oxidation (M))GY_		FSEQVAM(1)GY		FSEQVAM(120)GY	0	0	1		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2261962890625	2	524.226225	1046.4379	-0.16732	-8.7712E-05	-0.011851	-6.2126E-06	-0.17917	-9.3924E-05	524.2261138522122	52.678	1.308	52.42	51.954	53.262	-0.25838					77	33	4	0	0	0	0.082191	3	5482	5470;5482;5495		116.9	55.932	1	4488500			17579	8864	12240	12265	19769;19770;19771	19770		373			-0.08346461833457397
FSEQVAMGY	9	Oxidation (M)	_FSEQVAM(Oxidation (M))GY_		FSEQVAM(1)GY		FSEQVAM(100)GY	0	0	1		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2265625	2	524.226225	1046.4379	-0.045997	-2.4113E-05	0.12225	6.4085E-05	0.07625	3.9972E-05	524.22615897658	52.517	1.4736	52.327	51.884	53.357	-0.18982					71	37	4	0	0	0	0.12602	3	5452	5452;5465;5477		104.75	43.775	1	2951200			17580	8864	12240	12265	19772;19773;19774	19772		373			-0.08346461833457397
FSEQVAMGY	9	Unmodified	_FSEQVAMGY_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2288818359375	2	516.228768	1030.44298	-0.28648	-0.00014789	0.5153	0.00026601	0.22881	0.00011812	516.2289456493144	61.969	0.90803	61.755	61.375	62.283	-0.21375					65	22	4	0	0	0	0.17822	1	6959	6959		93.195	29.889	1	6177500			17581	8864	12240	12266	19775	19775					-0.07102157970825829
FSEQVAMGY	9	Unmodified	_FSEQVAMGY_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2293090820312	2	516.228768	1030.44298	-0.067545	-3.4869E-05	0.16812	8.6789E-05	0.10058	5.192E-05	516.2287461827535	62.077	0.8232	61.819	61.505	62.328	-0.25725					60	20	4	0	0	0	0.12602	2	6960	6960;6972		104.75	32.869	1	5456600			17582	8864	12240	12266	19776;19777	19776					-0.07102157970825829
FSERELVSRLR	11	Unmodified	_FSERELVSRLR_					0	0	0		ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.7506408691406	3	464.596642	1390.7681	-0.35106	-0.0001631	2.8917	0.0013435	2.5407	0.0011804	464.59796366997307	42.594	1.0083	42.362	41.837	42.845	-0.23186					71	26	4	0	0	0	0.024801	1	3877	3877		17.833	3.1395	1	1739400			17583	12258	12241	12267	19778	19778					0.08834325157522471
FSFCFKREHT	10	Unmodified	_FSFCFKREHT_					0	0	0			REV__ENST00000555254.5_1_14:73614536-73614698:+|nuORF	REV__ENST00000555254.5_1_14:73614536-73614698:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.541259765625	3	434.541369	1300.60228	0.11895	5.1687E-05	-0.26766	-0.00011631	-0.14872	-6.4624E-05	434.5410768377641	20.412	0.63283	20.244	19.909	20.542	-0.16774					30	12	4	0	0	0	1.1295	1	554	554		26.063	4.3776	1	214600	+		17584	35006	12242	12268	19779	19779					-0.03600024622846831
FSFFWPFKIL	10	Unmodified	_FSFFWPFKIL_					0	0	0			REV__ENSG00000143653|ENST00000366510|SCCPDH	REV__ENSG00000143653|ENST00000366510|SCCPDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	445.2885437011719	3	444.577749	1330.71142	0.60267	0.00026794	-0.95808	-0.00042594	-0.3554	-0.000158	444.57730824583143	87.863	4.9751	87.829	85.045	90.02	-0.034576					147	118	2	0	0	0	0.03519	1	11344	11344		27.047	6.0151	1	172130	+		17585	24272	12243	12269	19780	19780					0.0592892933893836
FSFGVVVLETL	11	Unmodified	_FSFGVVVLETL_					0	0	0		nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1;ENST00000477274.1_1_X:153276255-153284091:-|nuORF	nc|ENSG00000184216|P51617-4|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.592529296875	3	404.228785	1209.66453	0.025474	1.0297E-05	-2.155	-0.00087112	-2.1296	-0.00086083	404.2277806935076	38.203	0.60943	37.982	37.577	38.187	-0.22149					21	17	2	0	0	0	0.024753	1	3125	3125		38.754	14.522	1	143650			17586	9317	12244	12270	19781	19781					0.06808024997167195
FSFLFFTIL	9	Unmodified	_FSFLFFTIL_					0	0	0			REV__ENSG00000131482|ENST00000253801|G6PC1	REV__ENSG00000131482|ENST00000253801|G6PC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.285888671875	2	567.815336	1133.61612	0.51029	0.00028975	2.1414	0.0012159	2.6517	0.0015057	567.8162002828545	63.287	0.80866	63.341	62.888	63.697	0.054104					27	21	2	0	0	0	0.024506	1	7243	7243		16.473	0	1	118820	+		17587	23217	12245	12271	19782	19782					0.05465576147912543
FSFLFFTIL	9	Unmodified	_FSFLFFTIL_					0	0	0			REV__ENSG00000131482|ENST00000253801|G6PC1	REV__ENSG00000131482|ENST00000253801|G6PC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.815336	1133.61612	-0.78386	-0.00044509	2.5763	0.0014629	1.7925	0.0010178	567.8165440981127	63.166	0.96711	63.166	62.769	63.736	0	-0.086515	0.0003536	NaN	16.473	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166300	+		17588	23217	12245	12271							0.05465576147912543
FSFLFFTIL	9	Unmodified	_FSFLFFTIL_					0	0	0			REV__ENSG00000131482|ENST00000253801|G6PC1	REV__ENSG00000131482|ENST00000253801|G6PC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	567.815336	1133.61612	-0.12902	-7.3259E-05	1.8454	0.0010479	1.7164	0.0009746	567.8163771146097	63.501	0.71889	63.249	62.976	63.695	-0.25141	-0.0027665	-0.00047645	NaN	16.473	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189760	+		17589	23217	12245	12271							0.05465576147912543
FSFMREIR	8	Unmodified	_FSFMREIR_					0	0	0			REV__ENST00000371564.7_1_20:50004293-50004545:-|nuORF	REV__ENST00000371564.7_1_20:50004293-50004545:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.8145751953125	2	543.281669	1084.54878	-1.1989	-0.00065133	-2.3988	-0.0013032	-3.5977	-0.0019546	543.2805482318739	29.959	0.28487	29.968	29.797	30.082	0.0086708					9	6	2	0	0	0	0.027866	1	1883	1883		55.504	2.1528	1	32832	+		17590	31166	12246	12272	19783	19783					0.009892226652709724
FSFQIDRSW	9	Unmodified	_FSFQIDRSW_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.2886352539062	2	593.288005	1184.56146	-0.75201	-0.00044616	0.72518	0.00043024	-0.026835	-1.5921E-05	593.2881315718859	72.997	0.67946	72.72	72.454	73.133	-0.2769					41	15	4	0	0	0	0.10482	3	8580	8556;8565;8580		109.44	34.395	1	768430			17591	2546	12247	12273	19784;19785;19786	19786					-0.023440426708248197
FSFQIDRSW	9	Unmodified	_FSFQIDRSW_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.287353515625	2	593.288005	1184.56146	-0.8922	-0.00052933	0.67761	0.00040202	-0.21459	-0.00012731	593.2880280017346	73.03	0.71141	72.765	72.428	73.139	-0.26479					41	16	4	0	0	0	0.17273	2	8589	8577;8589		94.409	30.875	1	736620			17592	2546	12247	12273	19787;19788	19788					-0.023440426708248197
FSFQIDRSW	9	Unmodified	_FSFQIDRSW_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.2883911132812	2	593.288005	1184.56146	-0.93231	-0.00055313	0.72401	0.00042955	-0.2083	-0.00012358	593.2880948471327	72.758	0.74992	72.56	72.289	73.039	-0.19811					42	17	4	0	0	0	0.058169	2	8533	8533;8545		125.71	38.895	1	1024800			17593	2546	12247	12273	19789;19790	19789					-0.023440426708248197
FSFSSALIRHQ	11	Unmodified	_FSFSSALIRHQ_					0	0	0		ENSG00000127903|ENST00000537055|ZNF835	ENSG00000127903|ENST00000537055|ZNF835	ENSG00000127903|ENST00000537055|ZNF835	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.9068908691406	3	431.56305	1291.66732	0.23392	0.00010095	3.8357	0.0016554	4.0697	0.0017563	431.56522878619273	38.702	1.099	38.477	38.143	39.242	-0.2257					39	29	3	0	0	0	0.024739	1	3166	3166		22.562	0	1	114920			17594	4265	12248	12274	19791	19791					0.033152931746371905
FSFTPAWNW	9	Unmodified	_FSFTPAWNW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.2662963867188	2	578.266542	1154.51853	0.7978	0.00046134	-0.26716	-0.00015449	0.53064	0.00030685	578.2660343072013	97.039	1.1707	96.902	96.524	97.694	-0.1367					73	25	4	0	0	0	0.047345	3	12010	11998;12010;12022		129.68	64.217	1	666630			17595	2507	12249	12275	19792;19793;19794	19793					-0.05254812728230718
FSFTPAWNW	9	Unmodified	_FSFTPAWNW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.26708984375	2	578.266542	1154.51853	0.453	0.00026196	-0.13841	-8.0041E-05	0.31459	0.00018191	578.2662061322186	97.038	0.98196	96.914	96.617	97.599	-0.12368					56	21	4	0	0	0	0.033448	5	12018	12006;12018;12030;12047;12059		138.83	61.979	1	622190			17596	2507	12249	12275	19795;19796;19797;19798;19799	19796					-0.05254812728230718
FSFTPAWNW	9	Unmodified	_FSFTPAWNW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.2667236328125	2	578.266542	1154.51853	-0.55309	-0.00031984	0.74761	0.00043232	0.19451	0.00011248	578.2668066415913	97.131	1.0327	96.97	96.684	97.716	-0.16105					55	22	4	0	0	0	0.047345	5	11991	11991;12002;12015;12027;12038		129.68	47.442	1	672850			17597	2507	12249	12275	19800;19801;19802;19803;19804	19800					-0.05254812728230718
FSFVDLRLL	9	Unmodified	_FSFVDLRLL_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1;ENST00000474644.1_1_17:48276877-48278874:-|nuORF	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.3220825195312	2	555.321317	1108.62808	-1.4736	-0.00081832	1.4796	0.00082165	0.0059933	3.3282E-06	555.3219759473029	91.565	1.1437	91.417	91.097	92.241	-0.1487					67	26	4	0	0	0	0.013924	3	11236	11212;11224;11236		167.23	59.141	1	1403500			17598	2935	12250	12276	19805;19806;19807	19807					0.07811192891063001
FSFVDLRLL	9	Unmodified	_FSFVDLRLL_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1;ENST00000474644.1_1_17:48276877-48278874:-|nuORF	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.32177734375	2	555.321317	1108.62808	-0.40724	-0.00022615	0.55308	0.00030714	0.14584	8.0989E-05	555.3214240827034	91.556	1.0239	91.433	91.117	92.141	-0.12341					77	23	5	0	0	0	0.013924	2	11238	11238;11250		167.23	59.141	1	1369800			17599	2935	12250	12276	19808;19809	19808					0.07811192891063001
FSFVDLRLL	9	Unmodified	_FSFVDLRLL_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1;ENST00000474644.1_1_17:48276877-48278874:-|nuORF	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.3213500976562	2	555.321317	1108.62808	0.067966	3.7743E-05	-0.079872	-4.4355E-05	-0.011906	-6.6116E-06	555.3210677614928	91.648	1.35	91.509	91.189	92.539	-0.13942					78	31	5	0	0	0	0.030064	3	11228	11228;11240;11253		141.52	53.824	1	1501500			17600	2935	12250	12276	19810;19811;19812	19810					0.07811192891063001
FSGLVYKNVT	10	Unmodified	_FSGLVYKNVT_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.7319946289062	2	564.308406	1126.60226	-0.34759	-0.00019615	-2.5637	-0.0014467	-2.9112	-0.0016428	564.305236276615	52.071	0.80918	51.953	51.394	52.203	-0.11875					31	21	2	0	0	0	0.03519	1	5324	5324		41.427	7.2541	1	224700			17601	1176	12251	12277	19813	19813					0.04402298648778924
FSGLVYKNVT	10	Unmodified	_FSGLVYKNVT_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.308406	1126.60226	-1.523	-0.00085946	1.3723	0.00077441	-0.15071	-8.5046E-05	564.3085956875714	52.336	0.36973	52.067	51.869	52.238	-0.26903	0.057204	0.00085466	NaN	20.837	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262990			17602	1176	12251	12277							0.04402298648778924
FSGRKLKP	8	Unmodified	_FSGRKLKP_					0	0	0		ENST00000554803.5_3_14:35452031-35452082:+|nuORF	ENST00000554803.5_3_14:35452031-35452082:+|nuORF	ENST00000554803.5_3_14:35452031-35452082:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8083190917969	2	466.787444	931.560336	0.16612	7.7541E-05	2.4632	0.0011498	2.6293	0.0012273	466.788420318732	21.468	0.38922	21.277	21.078	21.468	-0.19072					13	7	2	0	0	0	0.027866	1	646	646		17.365	3.5896	1	32869			17603	16662	12252	12278	19814	19814					0.09181787750947024
FSGSPRDL	8	Unmodified	_FSGSPRDL_					0	0	0			REV__ENSG00000163710|ENST00000295992|PCOLCE2	REV__ENSG00000163710|ENST00000295992|PCOLCE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.72174072265625	2	439.721967	877.429381	0.62162	0.00027334	-1.7928	-0.00078832	-1.1712	-0.00051498	439.7211350198344	101.75	0.64523	101.58	101.28	101.93	-0.17178					25	14	2	0	0	0	1.0574	1	12638	12638		27.882	2.4321	1	234410	+		17604	25622	12253	12279	19815	19815					-0.014236476877727
FSGSRHLT	8	Unmodified	_FSGSRHLT_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.7633972167969	2	452.735409	903.456264	-0.060521	-2.74E-05	-0.21177	-9.5877E-05	-0.27229	-0.00012328	452.7351673062701	77.542	0.67078	77.556	77.275	77.945	0.013504					26	15	2	0	0	0	0.027866	1	9481	9481		24.203	0	1	233240	+		17605	20653	12254	12280	19816	19816					0.0006746092341245458
FSHLPPSPQA	10	Unmodified	_FSHLPPSPQA_					0	0	0		nc|ENSG00000237149|A6NEH8|ZNF503-AS2;ENST00000425916.4_1_10:77162993-77167502:+|nuORF	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	nc|ENSG00000237149|A6NEH8|ZNF503-AS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.7789306640625	2	540.777274	1079.53999	-0.9238	-0.00049957	-3.782	-0.0020452	-4.7058	-0.0025448	540.7749648238997	44.825	0.69938	44.572	44.391	45.091	-0.25252					21	17	2	0	0	0	0.03519	1	4177	4177		26.693	0	1	424820			17606	14073	12255	12281	19817	19817					0.0034057230047892517
FSIAVSSDG	9	Unmodified	_FSIAVSSDG_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7147216796875	2	441.713808	881.413062	-0.54386	-0.00024023	2.8611	0.0012638	2.3172	0.0010236	441.7147328139197	31.443	3.4401	31.443	29.773	33.213	0					251	85	5	0	0	0	0.80658	1	2100	2100		38.806	5.3132	1	2816000			17607	2256	12256	12282	19818	19818					-0.03238773644511639
FSICSADSTKV	11	Unmodified	_FSICSADSTKV_					0	0	0		ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	579.7898559570312	2	579.278989	1156.54342	-0.4292	-0.00024862	-3.319	-0.0019226	-3.7482	-0.0021712	579.2778936989741	94.568	1.3057	94.572	94.049	95.355	0.0041122					40	30	2	0	0	0	0.024736	1	11936	11936		22.58	1.6327	1	245040			17608	2202	12257	12283	19819	19819					-0.028585457078634136
FSIFQDSFL	9	Unmodified	_FSIFQDSFL_					0	0	0		CON__P01030	CON__P01030	CON__P01030	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.2721557617188	2	552.274032	1102.53351	0.42131	0.00023268	-1.0256	-0.0005664	-0.60428	-0.00033373	552.2712713323086	50.872	0.91348	50.76	50.488	51.401	-0.11163					112	23	7	0	0	0	0.45795	1	5228	5228		62.107	1.9892	1	6324200		+	17609	499	12258	12284	19820	19820					-0.013653656509177381
FSIKATLEKL	10	Unmodified	_FSIKATLEKL_					0	0	0			REV__ENST00000562022.1_1_15:43093683-43094592:-|nuORF	REV__ENST00000562022.1_1_15:43093683-43094592:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.3438720703125	2	575.347532	1148.68051	-0.38186	-0.0002197	-3.0769	-0.0017703	-3.4588	-0.00199	575.3456405295979	97.221	1.199	97.06	96.639	97.838	-0.16106					88	26	5	0	0	0	1.118	1	12068	12068		30.318	3.6248	1	4066100	+		17610	35188	12259	12285	19821	19821					0.11211731234061517
FSILKDVPNPN	11	Unmodified	_FSILKDVPNPN_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.3355712890625	2	622.337695	1242.66084	-0.54269	-0.00033774	-1.3233	-0.00082353	-1.866	-0.0011613	622.3367429399468	110.01	0.87253	110.01	109.85	110.73	0.0059204					89	28	4	0	0	0	1.0344	1	13864	13864		29.17	2.374	1	2532400			17611	5071	12260	12286	19822	19822					0.04921355223291357
FSIVPVSDD	9	Unmodified	_FSIVPVSDD_					0	0	0			REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.26318359375	2	489.742565	977.470577	-1.1386	-0.0005576	2.675	0.0013101	1.5364	0.00075245	489.74383156730784	55.324	0.56083	55.178	54.873	55.434	-0.14609					21	15	2	0	0	0	0.024457	1	5971	5971		45.952	17.698	1	135630	+		17612	23671	12261	12287	19823	19823					-0.01905931438955122
FSIVTDTPEL	10	Unmodified	_FSIVTDTPEL_					0	0	0		nc|ENSG00000078114|O76041-2|NEBL	nc|ENSG00000078114|O76041-2|NEBL	nc|ENSG00000078114|O76041-2|NEBL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.2904663085938	2	561.289879	1120.56521	0.56932	0.00031955	-1.4238	-0.00079919	-0.85453	-0.00047964	561.2888784375324	87.282	0.63176	87.303	87.01	87.641	0.021263					46	14	5	0	0	0	0.30843	1	10898	10898		108.09	0	1	799300			17613	18088	12262	12288	19824	19824					0.009745823123694208
FSIVTDTPEL	10	Unmodified	_FSIVTDTPEL_					0	0	0		nc|ENSG00000078114|O76041-2|NEBL	nc|ENSG00000078114|O76041-2|NEBL	nc|ENSG00000078114|O76041-2|NEBL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.289879	1120.56521	0.052658	2.9556E-05	-0.87473	-0.00049098	-0.82208	-0.00046142	561.2890789767289	87.277	0.58746	87.277	87.026	87.613	0	0.020847	0.00015411	NaN	108.09	42	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692430			17614	18088	12262	12288							0.009745823123694208
FSIVTDTPEL	10	Unmodified	_FSIVTDTPEL_					0	0	0		nc|ENSG00000078114|O76041-2|NEBL	nc|ENSG00000078114|O76041-2|NEBL	nc|ENSG00000078114|O76041-2|NEBL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	561.289879	1120.56521	0.0053447	2.9999E-06	-0.72714	-0.00040814	-0.7218	-0.00040514	561.2892026191167	87.223	0.67052	87.188	86.983	87.654	-0.035362	-0.06796	0.00031979	NaN	108.09	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856320			17615	18088	12262	12288							0.009745823123694208
FSKAQGGYGH	10	Unmodified	_FSKAQGGYGH_					0	0	0		ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2858276367188	2	526.251423	1050.48829	-0.90271	-0.00047505	0.81361	0.00042816	-0.089101	-4.689E-05	526.2508649655956	66.013	0.36843	65.8	65.547	65.915	-0.21328					12	8	2	0	0	0	0.03519	1	7562	7562		44.117	6.9577	1	65715			17616	15744	12263	12289	19825	19825					-0.034931713934156505
FSKDWDVTEY	10	Unmodified	_FSKDWDVTEY_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.53045654296875	3	430.527671	1288.56118	2.1601	0.00092998	3.5575	0.0015316	5.7176	0.0024616	430.5293999846609	23.518	1.4168	23.327	23.034	24.451	-0.19117					102	32	6	0	0	0	0.98527	1	905	905		47.96	6.5329	1	5197400			17617	7604	12264	12290	19826	19826					-0.07155507181323628
FSKELKNIN	9	Unmodified	_FSKELKNIN_					0	0	0			REV__ENST00000510769.5_2_3:130799307-130828713:+|nuORF	REV__ENST00000510769.5_2_3:130799307-130828713:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8162841796875	2	546.806031	1091.59751	-0.74567	-0.00040774	-2.1054	-0.0011513	-2.8511	-0.001559	547.3060617124172	67.27	1.0717	67.032	66.838	67.909	-0.23814					46	25	4	0	0	0	0.024427	1	7720	7720		42.396	7.2441	1	351590	+		17618	34109	12265	12291	19827	19827					0.05537414506034111
FSKFQHHFPRF	11	Unmodified	_FSKFQHHFPRF_					0	0	0			REV__ENSG00000161692|ENST00000315005|DBF4B	REV__ENSG00000161692|ENST00000315005|DBF4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.269287109375	3	493.254439	1476.74149	-1.0043	-0.00049536	1.6519	0.00081481	0.64764	0.00031945	493.25525292355076	25.825	0.58063	25.595	25.268	25.848	-0.23057					23	13	2	0	0	0	0.024828	1	1250	1250		24.232	7.0651	1	79233	+		17619	25397	12266	12292	19828	19828					0.0221868105682006
FSKLATELD	9	Unmodified	_FSKLATELD_					0	0	0			REV__ENST00000211936.10_1_6:27418933-27419005:-|nuORF	REV__ENST00000211936.10_1_6:27418933-27419005:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.27001953125	2	512.27149	1022.52843	0.13357	6.8426E-05	-0.47048	-0.00024101	-0.33691	-0.00017259	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	0.56934	1	13047	13047		54.776	14.204	1	236480	+		17620	29305	12267	12293	19829	19829					0.01806330486465413
FSKNKRFN	8	Unmodified	_FSKNKRFN_					0	0	0			REV__ENST00000263468.12_1_11:101834399-101834507:+|nuORF	REV__ENST00000263468.12_1_11:101834399-101834507:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7839965820312	2	520.785433	1039.55631	0.7045	0.00036689	-3.1524	-0.0016417	-2.4479	-0.0012748	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	1.0338	1	13322	13322		31.955	0.42505	1	3641400	+		17621	29690	12268	12294	19830	19830					0.0381169825723191
FSKRNSCD	8	Unmodified	_FSKRNSCD_					0	0	0			REV__ENST00000416319.5_1_X:153737099-153744245:-|nuORF	REV__ENST00000416319.5_1_X:153737099-153744245:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2354431152344	2	478.716359	955.418164	0.13499	6.4623E-05	1.7601	0.0008426	1.8951	0.00090723	478.7173386463001	45.089	0.28219	45.089	44.898	45.181	0					11	7	2	0	0	0	0.027866	1	4346	4346		37.159	19.794	1	265750	+		17622	32076	12269	12295	19831	19831					-0.06132793053564001
FSKSSKRPPSP	11	Unmodified	_FSKSSKRPPSP_					0	0	0			REV__nc|ENSG00000133858|O60293-2|ZFC3H1	REV__nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.8769836425781	3	406.559417	1216.65642	0.27547	0.000112	1.2269	0.0004988	1.5024	0.0006108	406.8930272245839	19.88	0.27825	19.763	19.593	19.872	-0.1168					9	5	2	0	0	0	0.024757	1	442	442		15.337	0	1	9302.9	+		17623	23400	12270	12296	19832	19832					0.056758908003757824
FSLAAARSPL	10	Unmodified	_FSLAAARSPL_					0	0	0			REV__ENSG00000105397|ENST00000525621|TYK2	REV__ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2681884765625	2	516.795466	1031.57638	-0.83239	-0.00043017	1.0941	0.00056543	0.26172	0.00013526	516.7946993995258	30.827	0.70057	30.901	30.75	31.45	0.074316					34	16	4	0	0	0	0.03519	1	2030	2030		24.519	3.5723	1	136840	+		17624	21523	12271	12297	19833	19833					0.061854491971644165
FSLGFNKP	8	Unmodified	_FSLGFNKP_					0	0	0		ENST00000495460.1_1_13:25875911-25891836:+|nuORF;nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58	ENST00000495460.1_1_13:25875911-25891836:+|nuORF	ENST00000495460.1_1_13:25875911-25891836:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7567443847656	2	455.245078	908.475603	-0.2186	-9.9517E-05	0.1824	8.3036E-05	-0.036204	-1.6482E-05	455.24626568587604	21.566	0.14522	21.476	21.354	21.499	-0.090092					4	2	2	0	0	0	0.027866	1	653	653		18.324	0	1	7596.8			17625	5337	12272	12298	19834	19834					0.01770417214322606
FSLKSNRA	8	Unmodified	_FSLKSNRA_					0	0	0		ENST00000530758.1_1_3:10167988-10168243:+|nuORF	ENST00000530758.1_1_3:10167988-10168243:+|nuORF	ENST00000530758.1_1_3:10167988-10168243:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.2510070800781	2	461.758884	921.503215	-0.8772	-0.00040506	0.73384	0.00033886	-0.14337	-6.6202E-05	461.7590811650714	30.059	0.59095	29.881	29.612	30.203	-0.17818					23	13	3	0	0	0	0.027866	1	1906	1906		44.117	15.863	1	204590			17626	16243	12273	12299	19835	19835					0.039323204745642215
FSLKSNRQKT	10	Unmodified	_FSLKSNRQKT_					0	0	0		nc|ENSG00000127081|Q5JVG2-3|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.8631896972656	3	403.56305	1207.66732	0.095418	3.8507E-05	2.9506	0.0011907	3.046	0.0012292	403.5651366609086	27.809	0.40906	27.641	27.359	27.768	-0.16816					15	9	2	0	0	0	0.03519	1	1559	1559		37.508	18.542	1	58822			17627	4226	12274	12300	19836	19836					0.07179293174635859
FSLKSNRQKT	10	Unmodified	_FSLKSNRQKT_					0	0	0		nc|ENSG00000127081|Q5JVG2-3|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.8630676269531	3	403.56305	1207.66732	-0.49692	-0.00020054	0.56299	0.0002272	0.066075	2.6665E-05	403.5634931299568	27.798	0.41294	27.644	27.393	27.806	-0.15463					17	9	3	0	0	0	0.03519	1	1554	1554		29.551	4.4248	1	62494			17628	4226	12274	12300	19837	19837					0.07179293174635859
FSLLSDIIS	9	Unmodified	_FSLLSDIIS_					0	0	0		nc|ENSG00000186439|Q13061-3|TRDN;nc|ENSG00000186439|Q13061-2|TRDN;ENSG00000186439|ENST00000334268|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2496032714844	2	497.776408	993.538263	-0.88197	-0.00043902	-0.11688	-5.8179E-05	-0.99885	-0.0004972	497.776203645368	29.076	0.66762	29.076	28.82	29.487	0					27	16	2	0	0	0	0.024323	1	1743	1743		63.306	13.282	1	788610			17629	9549	12275	12301	19838	19838					0.04123518491860523
FSLLSDIIS	9	Unmodified	_FSLLSDIIS_					0	0	0		nc|ENSG00000186439|Q13061-3|TRDN;nc|ENSG00000186439|Q13061-2|TRDN;ENSG00000186439|ENST00000334268|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.776408	993.538263	-1.3324	-0.00066326	-1.6477	-0.00082017	-2.9801	-0.0014834	497.7754443626547	29.148	0.52142	28.903	28.578	29.099	-0.24524	-0.032197	0.00047034	NaN	63.306	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514150			17630	9549	12275	12301							0.04123518491860523
FSLLSDIIS	9	Unmodified	_FSLLSDIIS_					0	0	0		nc|ENSG00000186439|Q13061-3|TRDN;nc|ENSG00000186439|Q13061-2|TRDN;ENSG00000186439|ENST00000334268|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	497.776408	993.538263	-0.57915	-0.00028829	-2.6119	-0.0013002	-3.1911	-0.0015884	497.774948179316	28.969	0.51485	28.82	28.572	29.087	-0.14952	-0.11554	-0.00048965	NaN	63.306	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497240			17631	9549	12275	12301							0.04123518491860523
FSLLVYFI	8	Unmodified	_FSLLVYFI_					0	0	0		ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2905578613281	2	501.288954	1000.56336	0.79978	0.00040092	1.6084	0.00080626	2.4082	0.0012072	501.2895758919925	98.248	1.3141	98.112	97.739	99.053	-0.13625					61	31	3	0	0	0	1.0017	1	12165	12165		37.028	1.4102	1	1546600			17632	14626	12276	12302	19839	19839					0.06309618085072088
FSLPAQPLW	9	Unmodified	_FSLPAQPLW_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7867431640625	2	529.78711	1057.55967	-1.3936	-0.00073829	0.61771	0.00032726	-0.77585	-0.00041104	529.7873589434507	91.035	2.2959	90.883	90.477	92.773	-0.15289					135	54	4	0	0	0	0.033448	7	11162	11128;11138;11150;11162;11174;11188;11201		138.83	64.851	1	11848000			17633	7318	12277	12303	19840;19841;19842;19843;19844;19845;19846	19843					0.03318948311220993
FSLPAQPLW	9	Unmodified	_FSLPAQPLW_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7872314453125	2	529.78711	1057.55967	-0.92323	-0.00048912	0.4373	0.00023168	-0.48593	-0.00025744	529.7872335002784	91.061	1.8739	90.938	90.589	92.463	-0.12341					121	44	4	0	0	0	0.016871	6	11169	11146;11157;11169;11181;11194;11209		152.47	78.216	1	12767000			17634	7318	12277	12303	19847;19848;19849;19850;19851;19852	19849					0.03318948311220993
FSLPAQPLW	9	Unmodified	_FSLPAQPLW_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7869873046875	2	529.78711	1057.55967	0.28024	0.00014847	-0.96835	-0.00051302	-0.68811	-0.00036455	529.786518612786	91.102	2.6494	90.963	90.619	93.269	-0.13942					150	62	4	0	0	0	0.015925	7	11161	11127;11138;11149;11161;11173;11186;11200		157.21	72.293	1	12732000			17635	7318	12277	12303	19853;19854;19855;19856;19857;19858;19859	19856					0.03318948311220993
FSLPLGVAF	9	Unmodified	_FSLPLGVAF_					0	0	0		ENST00000259951.11_1_6:29691075-29691183:+|nuORF	ENST00000259951.11_1_6:29691075-29691183:+|nuORF	ENST00000259951.11_1_6:29691075-29691183:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.25433349609375	2	475.770929	949.527304	-0.62982	-0.00029965	-3.3607	-0.0015989	-3.9905	-0.0018986	475.7693825717766	26.808	0.58543	26.651	26.388	26.974	-0.15664					18	13	2	0	0	0	0.024443	1	1444	1444		19.36	0	1	60690			17636	11441	12278	12304	19860	19860					0.05052160908223868
FSLQELSI	8	Unmodified	_FSLQELSI_					0	0	0			REV__ENSG00000182810|ENST00000332395|DDX28	REV__ENSG00000182810|ENST00000332395|DDX28	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.75604248046875	2	468.755475	935.496398	0.16568	7.7663E-05	0.61145	0.00028662	0.77713	0.00036428	468.75566181559384	94.264	1.0396	94.264	93.967	95.007	0					68	24	4	0	0	0	0.77775	1	11998	11998		60.972	0	1	2016900	+		17637	27511	12279	12305	19861	19861					0.026069628033383196
FSLQVLNW	8	Unmodified	_FSLQVLNW_					0	0	0			REV__ENSG00000136928|ENST00000259455|GABBR2	REV__ENSG00000136928|ENST00000259455|GABBR2	MSMS	OPSCC_40_ClassI_Rep-2	5	503.77911376953125	2	503.77146	1005.52837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.303	1	71.043	70.543	71.543	-0.26043								0	0	0	0.5562	1	8330	8330		51.335	0.14276	1				17638	23705	12280	12306	19862	19862					0.02582375277143001
FSLSRPGGL	9	Unmodified	_FSLSRPGGL_					0	0	0			REV__ENST00000608232.5_1_3:183851865-183852039:-|nuORF	REV__ENST00000608232.5_1_3:183851865-183852039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2610778808594	2	467.261259	932.507966	-0.71448	-0.00033385	0.35843	0.00016748	-0.35605	-0.00016637	467.2613274506348	44.763	1.0963	44.763	44.314	45.41	0					54	31	2	0	0	0	0.15366	1	4295	4295		98.629	2.4389	1	4899500	+		17639	35965	12281	12307	19863	19863					0.03901204617341136
FSLSRPGGL	9	Unmodified	_FSLSRPGGL_					0	0	0			REV__ENST00000608232.5_1_3:183851865-183852039:-|nuORF	REV__ENST00000608232.5_1_3:183851865-183852039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.26141357421875	2	467.261259	932.507966	-0.7247	-0.00033863	0.41829	0.00019545	-0.30642	-0.00014318	467.2613372888677	44.924	1.1272	44.775	44.355	45.483	-0.1488					64	32	4	0	0	0	0.11092	1	4301	4301		108.09	0	1	5229100	+		17640	35965	12281	12307	19864	19864					0.03901204617341136
FSLSRPGGL	9	Unmodified	_FSLSRPGGL_					0	0	0			REV__ENST00000608232.5_1_3:183851865-183852039:-|nuORF	REV__ENST00000608232.5_1_3:183851865-183852039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.2610778808594	2	467.261259	932.507966	0.47611	0.00022247	-0.75345	-0.00035206	-0.27734	-0.00012959	467.2607843998818	44.763	1.0951	44.8	44.375	45.471	0.0369					62	31	3	0	0	0	0.11092	2	4243	4243;4255		108.09	11.897	1	5115200	+		17641	35965	12281	12307	19865;19866	19865					0.03901204617341136
FSLVEEKAN	9	Unmodified	_FSLVEEKAN_					0	0	0		ENST00000481107.1_1_17:15928260-15930833:+|nuORF	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7929077148438	2	518.769114	1035.52368	0.62781	0.00032569	3.6743	0.0019061	4.3021	0.0022318	518.7700997167616	51.881	0.21741	51.697	51.524	51.741	-0.18405					8	5	2	0	0	0	0.024427	1	5326	5326		26.693	9.2249	1	152730			17642	15220	12282	12308	19867	19867					0.007334463437246086
FSLVKMLPL	9	Unmodified	_FSLVKMLPL_					0	0	0			REV__nc|ENSG00000186088|A4D1B5-2|GSAP	REV__nc|ENSG00000186088|A4D1B5-2|GSAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2872924804688	2	524.317189	1046.61982	-0.36443	-0.00019108	1.6418	0.0008608	1.2773	0.00066972	524.3178990177679	27.748	0.42729	27.506	27.335	27.763	-0.24217					27	9	4	0	0	0	0.023817	1	1586	1586		71.296	7.0884	1	217840	+		17643	37024	12283	12309	19868	19868					0.0983792265012653
FSLVPNRT	8	Unmodified	_FSLVPNRT_					0	0	0			REV__ENST00000480945.5_1_1:15995006-15995186:+|nuORF	REV__ENST00000480945.5_1_1:15995006-15995186:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.26123046875	2	467.261259	932.507966	-0.71448	-0.00033385	0.35843	0.00016748	-0.35605	-0.00016637	467.2613274506348	44.763	1.0963	44.763	44.314	45.41	0					54	31	2	0	0	0	0.35998	1	4307	4307		102.77	11.997	1	4899500	+		17644	33439	12284	12310	19869	19869					0.03901204617318399
FSLVPNRT	8	Unmodified	_FSLVPNRT_					0	0	0			REV__ENST00000480945.5_1_1:15995006-15995186:+|nuORF	REV__ENST00000480945.5_1_1:15995006-15995186:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.26123046875	2	467.261259	932.507966	-0.7247	-0.00033863	0.41829	0.00019545	-0.30642	-0.00014318	467.2613372888677	44.924	1.1272	44.775	44.355	45.483	-0.1488					64	32	4	0	0	0	0.4075	1	4311	4311		96.19	2.184	1	5229100	+		17645	33439	12284	12310	19870	19870					0.03901204617318399
FSLVPNRT	8	Unmodified	_FSLVPNRT_					0	0	0			REV__ENST00000480945.5_1_1:15995006-15995186:+|nuORF	REV__ENST00000480945.5_1_1:15995006-15995186:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.2615051269531	2	467.261259	932.507966	0.47611	0.00022247	-0.75345	-0.00035206	-0.27734	-0.00012959	467.2607843998818	44.763	1.0951	44.8	44.375	45.471	0.0369					62	31	3	0	0	0	0.50717	1	4232	4232		84.916	0	1	5115200	+		17646	33439	12284	12310	19871	19871					0.03901204617318399
FSLVSPPCGL	10	Carbamidomethyl (C)	_FSLVSPPC(Carbamidomethyl (C))GL_	FSLVSPPC(1)GL		FSLVSPPC(66)GL		0	1	0		ENST00000540112.1_3_11:60703176-60704376:+|nuORF	ENST00000540112.1_3_11:60703176-60704376:+|nuORF	ENST00000540112.1_3_11:60703176-60704376:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7744140625	2	538.775885	1075.53722	-0.43828	-0.00023613	-2.7903	-0.0015034	-3.2286	-0.0017395	538.7742598083668	74.93	0.98874	74.747	74.393	75.382	-0.18279					68	23	5	0	0	0	0.71272	1	8831	8831		66.429	13.493	1	3200300			17647	16413	12285	12311	19872	19872	220				0.002469808513069438
FSLVVSQALLT	11	Unmodified	_FSLVVSQALLT_					0	0	0			REV__ENST00000254616.10_1_11:6503555-6503747:+|nuORF	REV__ENST00000254616.10_1_11:6503555-6503747:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3421020507812	2	589.344989	1176.67542	-0.27155	-0.00016004	-3.0615	-0.0018043	-3.3331	-0.0019643	589.343051619512	103.85	0.53911	103.68	103.44	103.98	-0.16791					37	12	4	0	0	0	1.0592	1	12894	12894		22.58	0.61977	1	433340	+		17648	29530	12286	12312	19873	19873					0.09415427371436635
FSLWLKTQ	8	Unmodified	_FSLWLKTQ_					0	0	0			REV__ENST00000369046.8_1_6:107097010-107100239:+|nuORF	REV__ENST00000369046.8_1_6:107097010-107100239:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7693481445312	2	511.78711	1021.55967	-0.99821	-0.00051087	-2.8467	-0.0014569	-3.8449	-0.0019678	511.78554649902804	38.477	0.57653	38.298	38.102	38.678	-0.17929					25	15	2	0	0	0	0.027866	1	3229	3229		17.365	0	1	265930	+		17649	31079	12287	12313	19874	19874					0.0497494831122367
FSMFDLERL	9	Unmodified	_FSMFDLERL_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	579.3297119140625	2	579.286617	1156.55868	-1.2645	-0.00073249	-2.6728	-0.0015483	-3.9373	-0.0022808	579.2850247869262	47.332	0.31776	47.332	47.146	47.464	0					12	8	2	0	0	0	0.024511	1	4727	4727		19.104	0	1	92524	+		17650	28092	12288	12314	19875	19875					-0.013336341199874369
FSMTYNRPIT	10	Unmodified	_FSMTYNRPIT_					0	0	0			REV__ENSG00000197838|ENST00000330436|CYP2A13;REV__ENSG00000255974|ENST00000301141|CYP2A6	REV__ENSG00000197838|ENST00000330436|CYP2A13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.5245666503906	3	410.537624	1228.59104	0.093962	3.8575E-05	-2.799	-0.0011491	-2.705	-0.0011105	410.5377587049767	55.23	0.33491	54.999	54.855	55.19	-0.23087					12	9	3	0	0	0	0.03519	1	5945	5945		14.086	1.8793	1	186940	+		17651	28351;29074	12289	12315	19876	19876					-0.014108467169990035
FSNELFTPL	9	Unmodified	_FSNELFTPL_					0	0	0			REV__ENST00000502852.1_1_3:131101978-131102182:+|nuORF	REV__ENST00000502852.1_1_3:131101978-131102182:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.796630859375	2	534.274032	1066.53351	-1.2336	-0.00065907	1.3577	0.0007254	0.12414	6.6325E-05	534.2747137502632	92.044	0.66647	92.044	91.511	92.178	0					21	15	2	0	0	0	0.024397	1	11598	11598		39.253	0	1	98038	+		17652	28435	12290	12316	19877	19877					0.0029063434910767683
FSNPDRLPQ	9	Unmodified	_FSNPDRLPQ_					0	0	0			REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6	REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.74951171875	2	537.272355	1072.53016	-0.60349	-0.00032424	1.6897	0.00090781	1.0862	0.00058357	537.774706006558	76.225	0.2309	75.954	75.813	76.044	-0.27161					6	5	2	0	0	0	0.024457	1	9033	9033		10.265	1.0823	1	55817	+		17653	19880	12291	12317	19878	19878					-0.003206157049135072
FSPCGKGDTQW	11	Unmodified	_FSPCGKGDTQW_					0	0	0			REV__ENST00000279873.11_2_10:63853112-63853211:+|nuORF	REV__ENST00000279873.11_2_10:63853112-63853211:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.18304443359375	3	409.181729	1224.52336	-0.24849	-0.00010168	2.2893	0.00093675	2.0408	0.00083508	409.18305072452813	25.15	1.5357	24.923	24.451	25.987	-0.22683					130	36	7	0	0	0	0.87721	1	1168	1168		53.013	2.9794	1	7181700	+		17654	29872	12292	12318	19879	19879					-0.07992296647785224
FSPCGKGDTQW	11	Unmodified	_FSPCGKGDTQW_					0	0	0			REV__ENST00000279873.11_2_10:63853112-63853211:+|nuORF	REV__ENST00000279873.11_2_10:63853112-63853211:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.182861328125	3	409.181729	1224.52336	0.18587	7.6053E-05	1.8323	0.00074974	2.0181	0.00082579	409.1828105117161	24.973	1.3976	24.798	24.296	25.694	-0.17484					117	32	6	0	0	0	0.67481	2	1155	1119;1155		65.278	10.194	1	8300800	+		17655	29872	12292	12318	19880;19881	19881					-0.07992296647785224
FSPCGKGDTQW	11	Unmodified	_FSPCGKGDTQW_					0	0	0			REV__ENST00000279873.11_2_10:63853112-63853211:+|nuORF	REV__ENST00000279873.11_2_10:63853112-63853211:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.1830139160156	3	409.181729	1224.52336	1.2683	0.00051898	0.68901	0.00028193	1.9574	0.00080091	409.18237826460523	25.013	1.4866	24.842	24.339	25.825	-0.17151					110	34	6	0	0	0	0.78452	1	1138	1138		58.63	3.5457	1	8321400	+		17656	29872	12292	12318	19882	19882					-0.07992296647785224
FSPGPILP	8	Unmodified	_FSPGPILP_					0	0	0		nc|ENSG00000186007|Q68G75-4|LEMD1;nc|ENSG00000186007|Q68G75-5|LEMD1;ENSG00000186007|ENST00000367153|LEMD1	nc|ENSG00000186007|Q68G75-4|LEMD1	nc|ENSG00000186007|Q68G75-4|LEMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.55023193359375	2	414.236722	826.45889	-0.47145	-0.00019529	-2.0652	-0.00085549	-2.5367	-0.0010508	414.23901777251575	29.287	0.74205	29.287	28.99	29.732	0					56	18	5	0	0	0	0.027866	1	1830	1830		13.775	0	1	562550			17657	9503	12293	12319	19883	19883					0.03871916328375846
FSPHGLLEGLR	11	Unmodified	_FSPHGLLEGLR_					0	0	0			REV__ENSG00000184967|ENST00000330579|NOC4L	REV__ENSG00000184967|ENST00000330579|NOC4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.24365234375	3	409.227779	1224.66151	-1.0403	-0.0004257	0.90141	0.00036888	-0.13884	-5.6817E-05	409.22819335269315	44.41	0.41878	44.191	43.972	44.391	-0.21938					26	11	3	0	0	0	0.024804	1	4151	4151		29.245	0	1	402070	+		17658	27714	12294	12320	19884	19884					0.058161946629979866
FSPKATSILGL	11	Unmodified	_FSPKATSILGL_					0	0	0			REV__nc|ENSG00000164616|Q9UKT6|FBXL21P	REV__nc|ENSG00000164616|Q9UKT6|FBXL21P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.331882	1132.64921	0.30028	0.00017036	-3.0059	-0.0017053	-2.7056	-0.001535	567.3299930544371	88.156	1.3452	88.025	87.056	88.401	-0.13135					87	32	4	0	0	0	0.94988	1	10729	10729		47.96	13.787	1	1707200	+		17659	36869	12295	12321	19885	19885					0.0881915819995811
FSPQAHAWGQ	10	Unmodified	_FSPQAHAWGQ_					0	0	0			REV__ENST00000246174.6_2_X:101856417-101857057:+|nuORF	REV__ENST00000246174.6_2_X:101856417-101857057:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2177734375	2	564.764697	1127.51484	-1.3511	-0.00076304	1.9128	0.0010803	0.56169	0.00031723	565.2673150252335	33.907	0.3131	33.732	33.583	33.896	-0.17557					10	7	2	0	0	0	0.03519	1	2447	2447		25.574	0	1	73993	+		17660	29473	12296	12322	19886	19886					-0.04381482502117251
FSPQMVEY	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))FSPQM(Oxidation (M))VEY_		FSPQM(1)VEY		FSPQM(69)VEY	1	0	1			REV__ENST00000474240.1_1_6:127637576-127637633:-|nuORF	REV__ENST00000474240.1_1_6:127637576-127637633:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7293701171875	2	529.7286	1057.44265	0.36473	0.00019321	2.6226	0.0013892	2.9873	0.0015824	529.7297285115018	50.907	0.80046	50.795	50.488	51.288	-0.11163					53	20	4	0	0	0	0.68164	1	5208	5208		68.787	10.976	1	2703200	+		17661	33268	12297	12323	19887	19887		910			-0.08377577690680482
FSPRLSEA	8	Unmodified	_FSPRLSEA_					0	0	0			REV__ENSG00000142959|ENST00000372207|BEST4	REV__ENSG00000142959|ENST00000372207|BEST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.7376403808594	2	453.737617	905.460681	0.98904	0.00044876	-2.0737	-0.00094093	-1.0847	-0.00049217	453.73656858421526	97.719	1.1661	97.717	97.101	98.267	-0.0020752					47	26	2	0	0	0	1.043	1	12416	12416		30.504	0	1	128300	+		17662	24189	12298	12324	19888	19888					0.004169253463260247
FSPRLSEA	8	Unmodified	_FSPRLSEA_					0	0	0			REV__ENSG00000142959|ENST00000372207|BEST4	REV__ENSG00000142959|ENST00000372207|BEST4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	453.737617	905.460681	0.34512	0.0001566	-1.6563	-0.00075152	-1.3112	-0.00059492	453.73683604637296	97.546	1.1322	97.546	97.058	98.19	0	-0.10229	0.00014739	NaN	30.504	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138480	+		17663	24189	12298	12324							0.004169253463260247
FSPRLSEA	8	Unmodified	_FSPRLSEA_					0	0	0			REV__ENSG00000142959|ENST00000372207|BEST4	REV__ENSG00000142959|ENST00000372207|BEST4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	453.737617	905.460681	0.61431	0.00027874	-1.9055	-0.0008646	-1.2912	-0.00058587	453.7367273744688	97.673	1.254	97.682	97.059	98.313	0.0089111	0.033849	-7.8775E-05	NaN	30.504	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178200	+		17664	24189	12298	12324							0.004169253463260247
FSPRLSEA	8	Unmodified	_FSPRLSEA_					0	0	0			REV__ENSG00000142959|ENST00000372207|BEST4	REV__ENSG00000142959|ENST00000372207|BEST4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	453.737617	905.460681	0.98904	0.00044876	-2.0737	-0.00094093	-1.0847	-0.00049217	453.73656858421526	97.719	1.1661	97.717	97.101	98.267	-0.0020752	0.068444	-0.00023144	NaN	30.504	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128300	+		17665	24189	12298	12324							0.004169253463260247
FSPRSLHLQ	9	Unmodified	_FSPRSLHLQ_					0	0	0		ENST00000532571.1_1_8:144766694-144767012:+|nuORF	ENST00000532571.1_1_8:144766694-144767012:+|nuORF	ENST00000532571.1_1_8:144766694-144767012:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.7986450195312	2	542.79854	1083.58253	-1.0895	-0.00059136	1.467	0.0007963	0.37757	0.00020494	542.7991243267224	32.001	0.59481	31.843	31.569	32.163	-0.15772					33	13	3	0	0	0	0.59099	1	2165	2165		53.351	5.6941	1	1371200			17666	16293	12299	12325	19889	19889					0.04407967428710435
FSPRVAGE	8	Unmodified	_FSPRVAGE_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	431.7245788574219	2	431.72451	861.434466	0.38484	0.00016614	0.28167	0.00012161	0.66651	0.00028775	431.72450220023586	36.247	0.97649	36.031	35.713	36.689	-0.21661					51	25	3	0	0	0	0.35998	1	2819	2819		102.77	1.5618	1	3891700			17667	6152	12300	12326	19890	19890					-0.0017934382514113167
FSPRVAGE	8	Unmodified	_FSPRVAGE_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	431.7248840332031	2	431.72451	861.434466	1.3154	0.00056787	-0.75642	-0.00032657	0.55894	0.00024131	431.724053701664	36.146	1.0868	35.948	35.609	36.696	-0.19829					57	28	3	0	0	0	0.33369	2	2795	2795;2807		106.42	17.772	1	3270200			17668	6152	12300	12326	19891;19892	19891					-0.0017934382514113167
FSQDKTVK	8	Unmodified	_FSQDKTVK_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7608337402344	2	476.758549	951.502546	3.1342	0.0014943	2.0281	0.00096691	5.1623	0.0024612	476.7593136802474	19.164	0.64227	19.23	18.995	19.637	0.066195					26	12	3	0	0	0	0.98759	1	347	347		39.253	0.44669	1	255920			17669	2538	12301	12327	19893	19893					0.024854810348642786
FSQGLVKAAE	10	Unmodified	_FSQGLVKAAE_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-7|TRPM6;nc|ENSG00000119121|Q9BX84-6|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2542724609375	2	525.284931	1048.55531	-1.0595	-0.00055652	0.59908	0.00031469	-0.46039	-0.00024183	525.2850808451175	44.948	0.83575	44.848	44.554	45.39	-0.099445					31	22	2	0	0	0	0.03519	1	4268	4268		26.693	7.5894	1	720080			17670	3722	12302	12328	19894	19894					0.032974390976505674
FSQILAVFCV	10	Unmodified	_FSQILAVFCV_					0	0	0			REV__ENST00000483205.1_1_3:47551637-47555080:-|nuORF;REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8045043945312	2	563.801903	1125.58925	0.65679	0.0003703	-0.51127	-0.00028825	0.14552	8.2044E-05	563.80213607495	107.12	0.68301	107.12	106.75	107.43	0					35	19	2	0	0	0	0.96822	1	13724	13724		49.536	10.283	1	190150	+		17671	33552;33503	12303	12329	19895	19895					0.03148144265037445
FSQKVKELK	9	Unmodified	_FSQKVKELK_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8297729492188	2	553.832049	1105.64954	0.041819	2.3161E-05	-3.8244	-0.0021181	-3.7826	-0.0020949	553.8296782014007	101.58	0.90076	101.41	101.15	102.05	-0.17178					49	20	4	0	0	0	0.74711	1	12594	12594		42.864	2.0861	1	519240	+		17672	24074	12304	12330	19896	19896					0.10094577919790026
FSQNGPGHPGN	11	Unmodified	_FSQNGPGHPGN_					0	0	0			REV__nc|ENSG00000165494|O94913|PCF11	REV__nc|ENSG00000165494|O94913|PCF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.7286376953125	2	556.249412	1110.48427	-0.058441	-3.2508E-05	-0.90886	-0.00050555	-0.9673	-0.00053806	556.248615054262	57.345	0.65553	57.345	56.841	57.496	0					20	17	2	0	0	0	0.024771	1	6465	6465		51.193	24.5	1	101260	+		17673	25893	12305	12331	19897	19897					-0.06655260887146142
FSQVFLRE	8	Unmodified	_FSQVFLRE_					0	0	0		ENST00000570784.1_1_17:7836105-7836449:+|nuORF;ENST00000380262.7_1_17:7836176-7836449:+|nuORF	ENST00000570784.1_1_17:7836105-7836449:+|nuORF	ENST00000570784.1_1_17:7836105-7836449:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.279541015625	2	513.274367	1024.53418	2.6655	0.0013681	-4.1209	-0.0021151	-1.4554	-0.00074701	513.271326683903	19.151	0.44392	19.217	18.945	19.389	0.066195					11	8	2	0	0	0	0.027866	1	340	340		38.806	3.1879	1	25283			17674	13304	12306	12332	19898	19898					0.02289473788800933
FSQYLPIL	8	Unmodified	_FSQYLPIL_					0	0	0			REV__DTD1-RALGAPA2|1|fusion	REV__DTD1-RALGAPA2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.80584716796875	2	490.776211	979.537869	0.61068	0.00029971	-2.8302	-0.001389	-2.2195	-0.0010893	490.7742029016148	96.615	0.57217	96.621	96.397	96.969	0.0065079					17	12	2	0	0	0	0.027866	1	12281	12281		63.306	0	1	89829	+		17675	19715	12307	12333	19899	19899					0.04728143562670084
FSRDWVLPCW	10	Unmodified	_FSRDWVLPCW_					0	0	0		ENST00000438124.2_1_11:68505178-68506175:-|nuORF	ENST00000438124.2_1_11:68505178-68506175:-|nuORF	ENST00000438124.2_1_11:68505178-68506175:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.1701354980469	3	436.877981	1307.61211	-0.60771	-0.00026549	3.0719	0.001342	2.4642	0.0010765	436.8790804933267	27.356	0.75773	27.188	26.892	27.649	-0.16816					27	17	2	0	0	0	0.03519	1	1525	1525		21.686	0.65352	1	107710			17676	14306	12308	12334	19900	19900					-0.02938836617454399
FSREGGRW	8	Unmodified	_FSREGGRW_					0	0	0		ENST00000264233.5_2_3:121264747-121264837:-|nuORF	ENST00000264233.5_2_3:121264747-121264837:-|nuORF	ENST00000264233.5_2_3:121264747-121264837:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7691650390625	2	497.746308	993.478063	-0.43723	-0.00021763	-3.7613	-0.0018722	-4.1986	-0.0020898	497.7446264063139	25.199	0.19155	25.199	25.094	25.285	0					7	4	2	0	0	0	0.027866	1	1169	1169		35.201	1.6851	1	32538			17677	11556	12309	12335	19901	19901					-0.01893734327995844
FSRGVAACIP	10	Unmodified	_FSRGVAACIP_					0	0	0			REV__ENST00000393640.8_1_16:70415384-70415504:-|nuORF	REV__ENST00000393640.8_1_16:70415384-70415504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8128356933594	2	510.768394	1019.52224	-0.22508	-0.00011496	-3.3845	-0.0017287	-3.6096	-0.0018437	510.7660550729155	104.26	0.50543	104.26	104.03	104.53	0					15	11	2	0	0	0	0.03519	1	13370	13370		37.812	8.662	1	107260	+		17678	31652	12310	12336	19902	19902					0.013255337739451534
FSRKLTALY	9	Unmodified	_FSRKLTALY_					0	0	0		ENSG00000113318|ENST00000265081|MSH3;MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.7405395507812	2	549.818941	1097.62333	-0.54129	-0.00029761	0.047858	2.6313E-05	-0.49343	-0.0002713	549.8190075267106	42.676	0.49399	42.45	42.22	42.714	-0.22597					19	12	2	0	0	0	0.024541	1	3876	3876		26.693	13.734	1	195650			17679	3280	12311	12337	19903	19903					0.07842308748308824
FSRLRGSG	8	Unmodified	_FSRLRGSG_					0	0	0		ENST00000560571.1_1_15:85923835-85924933:+|nuORF;ENST00000559362.5_3_15:85923835-86028959:+|nuORF	ENST00000560571.1_1_15:85923835-85924933:+|nuORF	ENST00000560571.1_1_15:85923835-85924933:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.2437744140625	2	440.243401	878.472249	1.524	0.00067094	-1.3809	-0.00060793	0.14312	6.3008E-05	440.2427649277293	25.127	0.97868	24.956	24.427	25.406	-0.17151					47	22	3	0	0	0	1.0365	1	1109	1109		31.53	5.9558	1	623320			17680	16778	12312	12338	19904	19904					0.028151671603382056
FSRNHEPQL	9	Unmodified	_FSRNHEPQL_					0	0	0		ENST00000584106.1_1_17:37026345-37026510:+|nuORF	ENST00000584106.1_1_17:37026345-37026510:+|nuORF	ENST00000584106.1_1_17:37026345-37026510:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8605346679688	2	564.283254	1126.55196	-0.54865	-0.00030959	-1.0347	-0.00058388	-1.5834	-0.00089348	564.28258422055	66.368	0.30956	66.15	65.991	66.301	-0.21822					11	7	2	0	0	0	0.024323	1	7625	7625		44.117	5.3107	1	98581			17681	17200	12313	12339	19905	19905					-0.00625810956330497
FSRPIRLSGP	10	Unmodified	_FSRPIRLSGP_					0	0	0		ENST00000471486.5_1_1:32690031-32691888:+|nuORF;ENST00000483517.5_1_1:32688126-32691885:+|nuORF	ENST00000471486.5_1_1:32690031-32691888:+|nuORF	ENST00000471486.5_1_1:32690031-32691888:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2222290039062	2	565.327465	1128.64038	-0.52527	-0.00029695	-0.19313	-0.00010918	-0.7184	-0.00040613	565.3270059306595	36.963	0.507	36.743	36.607	37.114	-0.2195					16	12	2	0	0	0	0.03519	1	2965	2965		15.642	0	1	101970			17682	14959	12314	12340	19906	19906					0.08120229354108233
FSRPLWTW	8	Unmodified	_FSRPLWTW_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|124|3|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|124|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.767822265625	2	546.784902	1091.55525	-0.76946	-0.00042073	0.075291	4.1168E-05	-0.69417	-0.00037956	546.7844432612086	38.397	0.65518	38.179	37.988	38.643	-0.21849					34	17	3	0	0	0	0.027866	1	3181	3181		34.173	1.3601	1	499830	+		17683	36119	12315	12341	19907	19907					0.013134838883161137
FSRRHTVPD	9	Unmodified	_FSRRHTVPD_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.311279296875	2	557.791247	1113.56794	-0.41467	-0.0002313	2.9159	0.0016265	2.5012	0.0013952	557.792680309267	69.343	0.62256	69.121	68.81	69.432	-0.22245					31	14	3	0	0	0	0.024495	1	8078	8078		19.997	3.5236	1	619580			17684	1555	12316	12342	19908	19908					0.015698952805678346
FSRRHTVPD	9	Unmodified	_FSRRHTVPD_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.791247	1113.56794	-0.77492	-0.00043225	3.734	0.0020828	2.9591	0.0016506	557.7929746340595	69.411	0.66571	69.144	68.87	69.536	-0.26724	0.029323	0.00072639	NaN	9.1829	35	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618760			17685	1555	12316	12342							0.015698952805678346
FSRSGGSRF	9	Unmodified	_FSRSGGSRF_					0	0	0			REV__KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant	REV__KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.75079345703125	2	500.75159	999.488627	-0.062406	-3.125E-05	0.023175	1.1605E-05	-0.039231	-1.9645E-05	500.7515312677579	35.782	2.0768	35.584	35.327	37.404	-0.19829					123	54	4	0	0	0	0.17822	1	2745	2745		93.195	0.052222	1	16069000	+	+	17686	19550	12317	12343	19909	19909					-0.011137516735630015
FSRVFVTMEA	10	Unmodified	_FSRVFVTMEA_					0	0	0			REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.8016357421875	2	593.799891	1185.58523	-1.1868	-0.00070472	3.9616	0.0023524	2.7748	0.0016477	593.8023054283966	35.942	2.4854	35.737	35.428	37.913	-0.20518					202	66	5	0	0	0	0.88896	2	2770	2770;2806		54.776	10.399	1	98507000	+		17687	20169	12318	12344	19910;19911	19910					-0.00013945228624834272
FSRVFVTMEA	10	Unmodified	_FSRVFVTMEA_					0	0	0			REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8016357421875	2	593.799891	1185.58523	-0.75176	-0.0004464	3.489	0.0020717	2.7372	0.0016253	593.8020284979149	35.892	2.8005	35.675	35.391	38.191	-0.21661					234	75	6	0	0	0	0.88896	1	2830	2830		54.776	5.2403	1	98136000	+		17688	20169	12318	12344	19912	19912					-0.00013945228624834272
FSRVFVTMEA	10	Unmodified	_FSRVFVTMEA_					0	0	0			REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	REV__nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.799891	1185.58523	-0.22649	-0.00013449	3.0425	0.0018067	2.816	0.0016722	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.85955	1	2801	2801		56.721	7.2795	1	111520000	+		17689	20169	12318	12344	19913	19913					-0.00013945228624834272
FSRVPENYDY	10	Unmodified	_FSRVPENYDY_					0	0	0			REV__ENST00000602691.1_1_6:5261815-5368856:+|nuORF	REV__ENST00000602691.1_1_6:5261815-5368856:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.5303649902344	3	430.531415	1288.57242	-0.0029805	-1.2832E-06	-2.853	-0.0012283	-2.856	-0.0012296	430.5304049124205	23.593	1.09	23.413	23.157	24.247	-0.17989					84	25	7	0	0	0	1.1237	1	957	957		29.551	0	1	5141100	+		17690	35884	12319	12345	19914	19914					-0.06032685087188838
FSSEESKNP	9	Unmodified	_FSSEESKNP_					0	0	0		ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant	ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant	ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.83404541015625	2	512.732729	1023.4509	-0.47219	-0.00024211	3.4719	0.0017802	2.9997	0.0015381	512.7332853193105	72.863	0.50718	72.665	72.371	72.878	-0.19811					17	11	2	0	0	0	0.024457	1	8531	8531		29.15	0	1	67881			17691	87	12320	12346	19915	19915					-0.05988307449695185
FSSGVFWIGL	10	Unmodified	_FSSGVFWIGL_					0	0	0		ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.3081665039062	2	556.792392	1111.57023	-0.17926	-9.9811E-05	-3.0458	-0.0016959	-3.2251	-0.0017957	556.7903776229188	61.657	0.97166	61.443	60.96	61.932	-0.21375					33	23	2	0	0	0	0.03519	1	6889	6889		17.365	5.8539	1	90820			17692	160	12321	12347	19916	19916					0.01890930965669213
FSSISKALGLK	11	Unmodified	_FSSISKALGLK_					0	0	0			REV__ENST00000342992.10_3_2:179410309-179410396:-|nuORF	REV__ENST00000342992.10_3_2:179410309-179410396:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8431396484375	2	575.845156	1149.67576	-0.31557	-0.00018172	-2.8133	-0.00162	-3.1289	-0.0018017	575.843249217509	102.67	0.43951	102.54	102.28	102.72	-0.12666					29	9	4	0	0	0	1.0183	1	12775	12775		32.751	3.601	1	374640	+		17693	30656	12322	12348	19917	19917					0.10690847091268552
FSSLRPRS	8	Unmodified	_FSSLRPRS_					0	0	0		ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.24945068359375	2	475.264333	948.514114	0.45267	0.00021514	0.5527	0.00026268	1.0054	0.00047781	475.26441066803454	49.669	0.1515	49.518	49.407	49.558	-0.1512					5	3	2	0	0	0	0.027866	1	5115	5115		19.997	0.89325	1	66104			17694	17367	12323	12349	19918	19918					0.037797228488557266
FSSPLQQLRSV	11	Unmodified	_FSSPLQQLRSV_					0	0	0			REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF	REV__ENST00000405510.5_2_22:39131979-39132159:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8466491699219	3	421.234822	1260.68264	-0.27709	-0.00011672	0.072835	3.0681E-05	-0.20426	-8.604E-05	421.23463699533045	33.565	0.62234	33.364	33.094	33.717	-0.20019					35	15	4	0	0	0	0.02473	1	2373	2373		47.228	24.666	1	312480	+		17695	31911	12324	12350	19919	19919					0.0627215997183157
FSSPQRWPQKR	11	Unmodified	_FSSPQRWPQKR_					0	0	0			REV__ENST00000606117.1_1_6:13579754-13579835:+|nuORF	REV__ENST00000606117.1_1_6:13579754-13579835:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2878723144531	3	472.921349	1415.74222	0.64981	0.00030731	-1.5294	-0.00072328	-0.87958	-0.00041597	473.25618308767486	94.367	0.36295	94.367	94.167	94.53	0					9	8	2	0	0	0	0.024816	1	11990	11990		21.78	7.6944	1	63734	+		17696	35927	12325	12351	19920	19920					0.05097475705861143
FSSRHSLAK	9	Unmodified	_FSSRHSLAK_					0	0	0			REV__ENSG00000180855|ENST00000301547|ZNF443	REV__ENSG00000180855|ENST00000301547|ZNF443	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2211303710938	2	516.78289	1031.55123	-0.94162	-0.00048661	3.7638	0.001945	2.8221	0.0014584	516.7847280073305	35.279	1.0231	35.323	35.014	36.037	0.04406					60	26	3	0	0	0	0.024288	1	2737	2737		52.937	8.8199	1	1582700	+		17697	27368	12326	12352	19921	19921					0.03671394394609706
FSSRHSLAK	9	Unmodified	_FSSRHSLAK_					0	0	0			REV__ENSG00000180855|ENST00000301547|ZNF443	REV__ENSG00000180855|ENST00000301547|ZNF443	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.78289	1031.55123	-0.98956	-0.00051139	3.8939	0.0020123	2.9043	0.0015009	516.7847701689714	35.325	0.75137	35.325	35.018	35.769	0	0.031286	8.8925E-05	NaN	52.937	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1873400	+		17698	27368	12326	12352							0.03671394394609706
FSSRHSLAK	9	Unmodified	_FSSRHSLAK_					0	0	0			REV__ENSG00000180855|ENST00000301547|ZNF443	REV__ENSG00000180855|ENST00000301547|ZNF443	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.78289	1031.55123	-1.0857	-0.00056105	3.8989	0.0020149	2.8132	0.0014538	516.7848949344318	35.194	0.95666	35.173	34.79	35.747	-0.021763	-0.1213	9.413E-05	NaN	52.937	72	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1853900	+		17699	27368	12326	12352							0.03671394394609706
FSSRHSLAK	9	Unmodified	_FSSRHSLAK_					0	0	0			REV__ENSG00000180855|ENST00000301547|ZNF443	REV__ENSG00000180855|ENST00000301547|ZNF443	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.78289	1031.55123	-0.57225	-0.00029573	-0.14885	-7.6922E-05	-0.7211	-0.00037265	516.7832917409332	35.57	0.28087	35.355	35.176	35.457	-0.21555	0.060831	-0.0040895	NaN	52.937	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112660	+		17700	27368	12326	12352							0.03671394394609706
FSSVFRKSL	9	Unmodified	_FSSVFRKSL_					0	0	0		ENST00000467681.5_2_7:141438343-141438945:+|nuORF	ENST00000467681.5_2_7:141438343-141438945:+|nuORF	ENST00000467681.5_2_7:141438343-141438945:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.80029296875	2	535.803291	1069.59203	-0.70252	-0.00037641	-4.1735	-0.0022362	-4.876	-0.0026126	535.8007287841689	55.335	1.1436	55.129	54.502	55.646	-0.20623					79	31	4	0	0	0	0.48817	1	5905	5905		60.118	14.146	1	6338100			17701	14849	12327	12353	19922	19922					0.06001735714221468
FSSYVGSPYD	10	Unmodified	_FSSYVGSPYD_					0	0	0		nc|ENSG00000176842|P78411-2|IRX5;ENSG00000176842|ENST00000394636|IRX5	nc|ENSG00000176842|P78411-2|IRX5	nc|ENSG00000176842|P78411-2|IRX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3272705078125	2	561.242929	1120.47131	-0.93503	-0.00052478	1.2565	0.00070521	0.32148	0.00018043	561.243702442719	69.002	0.8222	68.74	68.22	69.043	-0.26166					27	19	2	0	0	0	0.03519	1	7986	7986		40.778	17.736	1	253050			17702	8672	12328	12354	19923	19923					-0.08411136789891316
FSTERYSCW	9	Unmodified	_FSTERYSCW_					0	0	0			REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.753173828125	2	589.750398	1177.48624	0.11601	6.8414E-05	2.3752	0.0014008	2.4912	0.0014692	589.7516419757926	51.033	0.65164	50.852	50.61	51.261	-0.18071					45	16	4	0	0	0	0.77768	1	5220	5220		40.778	3.6191	1	1798500	+		17703	30124	12329	12355	19924	19924					-0.0953996819355325
FSTERYSCW	9	Unmodified	_FSTERYSCW_					0	0	0			REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.750398	1177.48624	0.14373	8.4763E-05	2.4833	0.0014645	2.6271	0.0015493	589.7517060164116	50.986	0.76381	50.874	50.563	51.327	-0.11163	-0.016248	-0.00020226	NaN	40.778	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1730900	+		17704	30124	12329	12355							-0.0953996819355325
FSTERYSCW	9	Unmodified	_FSTERYSCW_					0	0	0			REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	589.750398	1177.48624	-0.76355	-0.00045031	3.3204	0.0019582	2.5569	0.0015079	589.7522112357966	51.222	0.72866	50.946	50.702	51.431	-0.27643	0.05498	0.00078507	NaN	40.778	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1856200	+		17705	30124	12329	12355							-0.0953996819355325
FSTERYSCW	9	Unmodified	_FSTERYSCW_					0	0	0			REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	REV__ENST00000306434.7_1_2:85771822-85771972:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	589.750398	1177.48624	0.11601	6.8414E-05	2.3752	0.0014008	2.4912	0.0014692	589.7516419757926	51.033	0.65164	50.852	50.61	51.261	-0.18071	-0.038731	-0.00032976	NaN	40.778	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1798500	+		17706	30124	12329	12355							-0.0953996819355325
FSTFLLALF	9	Unmodified	_FSTFLLALF_					0	0	0		nc|ENSG00000103546|P23975-3|SLC6A2;ENSG00000103546|ENST00000568943|SLC6A2;nc|ENSG00000103546|P23975-2|SLC6A2	nc|ENSG00000103546|P23975-3|SLC6A2	nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2715454101562	2	529.799686	1057.58482	-0.11315	-5.9947E-05	-1.2526	-0.00066361	-1.3657	-0.00072356	529.7977180116727	89.93	1.3255	89.914	89.162	90.487	-0.016716					54	31	4	0	0	0	0.024183	1	11275	11275		24.203	0	1	415620			17707	18141	12330	12356	19925	19925					0.05833003113775703
FSTLIYKF	8	Unmodified	_FSTLIYKF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.9339904785156	2	509.784036	1017.55352	0.62452	0.00031837	3.7212	0.001897	4.3458	0.0022154	509.7857070530981	18.784	0.59295	18.628	18.346	18.939	-0.15637					15	11	2	0	0	0	0.027866	1	361	361		38.806	25.352	1	21052			17708	5544	12331	12357	19926	19926					0.04544430079704398
FSTPCFCRA	9	Unmodified	_FSTPCFCRA_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2669067382812	2	516.225505	1030.43646	-0.75955	-0.0003921	0.84781	0.00043766	0.088261	4.5562E-05	516.227068174002	31.025	0.21151	31.094	30.955	31.166	0.06896					6	4	2	0	0	0	0.024506	1	1990	1990		23.042	0	1	15458			17709	3665	12332	12358	19927	19927					-0.07754374403202746
FSTPLSPSV	9	Unmodified	_FSTPLSPSV_					0	0	0			REV__ENST00000416965.5_2_6:134273610-134273733:+|nuORF	REV__ENST00000416965.5_2_6:134273610-134273733:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2560729980469	2	467.74765	933.480748	0.94499	0.00044202	-0.51552	-0.00024113	0.42948	0.00020089	467.74715969967104	76.608	0.28709	76.62	76.488	76.775	0.011635					11	6	2	0	0	0	0.024323	1	9361	9361		53.351	12.573	1	406040	+		17710	32088	12333	12359	19928	19928					0.011346762862899595
FSTPRTFQEM	10	Oxidation (M)	_FSTPRTFQEM(Oxidation (M))_		FSTPRTFQEM(1)		FSTPRTFQEM(51)	0	0	1		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	630.2920532226562	2	630.289888	1258.56522	4.6411	0.0029252	-1.904	-0.0012001	2.7371	0.0017252	630.2886215362796	17.356	0.44357	17.106	16.928	17.371	-0.25049					22	8	4	0	0	0	0.94316	1	155	155		51.193	6.8155	1	205520			17711	8626	12334	12360	19929	19929		360			-0.05371740959276394
FSTVGESLLY	10	Unmodified	_FSTVGESLLY_					0	0	0		ENSG00000165553|ENST00000298352|NGB	ENSG00000165553|ENST00000298352|NGB	ENSG00000165553|ENST00000298352|NGB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2596435546875	2	558.284597	1114.55464	0.59475	0.00033204	3.2698	0.0018255	3.8645	0.0021575	558.2875930709946	79.587	0.21016	79.341	79.236	79.447	-0.2465					5	4	2	0	0	0	0.03519	1	9517	9517		27.882	3.6795	1	36550			17712	7431	12335	12361	19930	19930					0.0019459965797068435
FSTVISHL	8	Unmodified	_FSTVISHL_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2287292480469	2	452.25036	902.486168	0.013847	6.2622E-06	-2.6103	-0.0011805	-2.5964	-0.0011742	452.2490007737428	102.6	0.56641	102.47	102.15	102.72	-0.12666					21	12	3	0	0	0	0.027866	1	12787	12787		19.36	12.167	1	53455	+		17713	20167	12336	12362	19931	19931					0.031023998687601306
FSTVLPQID	9	Unmodified	_FSTVLPQID_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.27520751953125	2	510.274032	1018.53351	0.40694	0.00020765	0.95184	0.0004857	1.3588	0.00069335	510.2737825310621	71.204	0.38983	71.204	70.987	71.377	0					14	9	2	0	0	0	0.024511	1	8602	8602		25.574	0	1	161600			17714	10768	12337	12363	19932	19932					0.02498634349092299
FSTVLPQID	9	Unmodified	_FSTVLPQID_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.274032	1018.53351	0.50382	0.00025709	1.3514	0.00068959	1.8552	0.00094667	510.27438740707254	71.451	0.36918	71.245	71.051	71.42	-0.20613	0.020255	0.00016982	NaN	31.53	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83100			17715	10768	12337	12363							0.02498634349092299
FSTVVYVPTSS	11	Unmodified	_FSTVVYVPTSS_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8018188476562	2	593.803154	1185.59175	-0.75176	-0.0004464	-2.0054	-0.0011908	-2.7572	-0.0016372	593.8020284979149	35.892	2.8005	35.675	35.391	38.191	-0.21661					234	75	6	0	0	0	0.95124	1	2818	2818		47.657	0	1	98136000	+		17716	20465	12338	12364	19933	19933					0.006382712037066085
FSTVVYVPTSS	11	Unmodified	_FSTVVYVPTSS_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.803154	1185.59175	-0.22649	-0.00013449	-2.4519	-0.0014559	-2.6784	-0.0015904	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.95124	1	2764	2764		47.657	1.6851	1	111520000	+		17717	20465	12338	12364	19934	19934					0.006382712037066085
FSVEFEIL	8	Unmodified	_FSVEFEIL_					0	0	0			REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.2799987792969	2	492.257851	982.501149	-0.0035587	-1.7518E-06	-4.0847	-0.0020107	-4.0883	-0.0020125	492.25590185981014	72.037	0.41107	71.831	71.658	72.069	-0.20613					11	9	2	0	0	0	0.027866	1	8441	8441		42.474	0	1	97933	+		17718	25463	12339	12365	19935	19935					0.009198469460898195
FSVKLSASLS	10	Unmodified	_FSVKLSASLS_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2557983398438	2	519.795132	1037.57571	-0.041631	-2.164E-05	0.27883	0.00014493	0.2372	0.00012329	519.79537847849	50.057	0.4573	49.951	49.745	50.202	-0.10558					15	11	2	0	0	0	0.03519	1	5105	5105		40.778	0	1	195280			17719	4293	12340	12366	19936	19936					0.058426097574511004
FSVKLSASLS	10	Unmodified	_FSVKLSASLS_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2557983398438	2	519.795132	1037.57571	0.48695	0.00025312	-0.0010852	-5.641E-07	0.48587	0.00025255	519.7949709203393	50.145	0.56473	49.964	49.788	50.353	-0.18071					27	14	3	0	0	0	0.03519	1	5123	5123		42.396	0	1	236360			17720	4293	12340	12366	19937	19937					0.058426097574511004
FSVLISPRE	9	Unmodified	_FSVLISPRE_					0	0	0		ENST00000590478.1_1_17:33569582-33569933:-|nuORF	ENST00000590478.1_1_17:33569582-33569933:-|nuORF	ENST00000590478.1_1_17:33569582-33569933:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2973022460938	2	524.295299	1046.57605	-0.48822	-0.00025597	4.2426	0.0022244	3.7544	0.0019684	524.2974061099324	100.39	1.4136	100.39	99.871	101.28	0					101	34	5	0	0	0	0.39228	1	12807	12807		66.429	0.53182	1	3300600			17721	17335	12341	12367	19938	19938					0.05462029477325814
FSVNILAEIP	10	Unmodified	_FSVNILAEIP_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.267333984375	2	551.810782	1101.60701	-0.60938	-0.00033627	0.43643	0.00024083	-0.17296	-9.5439E-05	551.8107649804728	90.821	1.7494	90.805	90.038	91.787	-0.016403					76	41	3	0	0	0	0.03519	1	11430	11430		24.519	2.8334	1	384040	+		17722	37059	12342	12368	19939	19939					0.06027182791558516
FSVPAIVL	8	Unmodified	_FSVPAIVL_					0	0	0		ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.55487060546875	2	423.260197	844.50584	-0.10921	-4.6225E-05	-2.4128	-0.0010212	-2.522	-0.0010675	423.2590336501296	23.596	0.75554	23.416	23.112	23.868	-0.17989					42	17	3	0	0	0	0.027866	1	999	999		8.8223	0	1	865740			17723	8356	12343	12369	19940	19940					0.07736775879516244
FSVQVPVNLN	10	Unmodified	_FSVQVPVNLN_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.8037719726562	2	558.806031	1115.59751	-0.32672	-0.00018257	-4.0096	-0.0022406	-4.3363	-0.0024232	558.8037595247166	49.189	0.89643	48.909	48.538	49.434	-0.27977					69	23	4	0	0	0	0.77808	1	4903	4903		62.107	1.9892	1	7262600	+		17724	25736	12344	12370	19941	19941					0.04433414506047484
FSVVVFFI	8	Unmodified	_FSVVVFFI_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2778015136719	2	479.275847	956.537141	0.24933	0.0001195	3.6104	0.0017304	3.8598	0.0018499	479.2774629464056	96.198	0.75041	96.198	95.821	96.571	0					55	17	4	0	0	0	0.96719	1	12255	12255		42.474	6.8562	1	2024100	+		17725	23665	12345	12371	19942	19942					0.05713348913616301
FSWGEVHSF	9	Unmodified	_FSWGEVHSF_					0	0	0			REV__nc|ENSG00000095981|Q96T55-5|KCNK16	REV__nc|ENSG00000095981|Q96T55-5|KCNK16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3350219726562	2	548.248349	1094.48214	-1.0958	-0.00060077	1.768	0.0009693	0.67219	0.00036853	548.7517140609012	29.465	0.28058	29.468	29.351	29.631	0.0031357					9	6	2	0	0	0	0.024523	1	1799	1799		21.96	7.095	1	19801	+		17726	20980	12346	12372	19943	19943					-0.06131689624930914
FSWLCAILI	9	Unmodified	_FSWLCAILI_					0	0	0		ENSG00000182447|ENST00000327928|OTOL1	ENSG00000182447|ENST00000327928|OTOL1	ENSG00000182447|ENST00000327928|OTOL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.259765625	2	533.293714	1064.57287	-0.7237	-0.00038594	3.1226	0.0016653	2.3989	0.0012793	533.2950547260301	66.5	0.37411	66.255	66.011	66.386	-0.24517					20	9	3	0	0	0	0.024325	1	7594	7594		31.955	0	1	273750			17727	9136	12347	12373	19944	19944					0.043170630989834535
FSWLKAAFA	9	Unmodified	_FSWLKAAFA_					0	0	0			REV__ENSG00000175826|ENST00000574322|CTDNEP1	REV__ENSG00000175826|ENST00000574322|CTDNEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7431640625	2	520.781828	1039.5491	-0.70914	-0.00036931	-3.4671	-0.0018056	-4.1762	-0.0021749	521.2814653953204	38.055	0.098312	37.875	37.809	37.908	-0.17929					4	2	2	0	0	0	0.024436	1	3103	3103		23.042	5.6775	1	39665	+		17728	26977	12348	12374	19945	19945					0.030909656568155697
FSWREPKEY	9	Unmodified	_FSWREPKEY_					0	0	0			REV__ENSG00000156136|ENST00000286648|DCK	REV__ENSG00000156136|ENST00000286648|DCK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.8840637207031	3	414.536501	1240.58767	-0.087726	-3.6365E-05	-1.2234	-0.00050715	-1.3111	-0.00054352	414.53595739566725	27.94	0.59524	27.788	27.526	28.121	-0.15195					21	14	2	0	0	0	0.0245	1	1529	1529		29.17	0	1	103130	+		17729	25054	12349	12375	19946	19946					-0.022997734993168706
FSYHLISI	8	Unmodified	_FSYHLISI_					0	0	0		ENST00000549982.5_1_12:93862976-93870754:+|nuORF;ENST00000552326.5_1_12:93862976-93894994:+|nuORF	ENST00000549982.5_1_12:93862976-93870754:+|nuORF	ENST00000549982.5_1_12:93862976-93870754:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2530212402344	2	490.26601	978.517468	0.168	8.2366E-05	2.6214	0.0012852	2.7894	0.0013675	490.26702379520805	43.06	0.21854	43.09	43.01	43.229	0.030823					7	5	2	0	0	0	0.027866	1	3971	3971		26.796	0	1	354850			17730	16572	12350	12376	19947	19947					0.027349729028628644
FSYRDVNSW	9	Unmodified	_FSYRDVNSW_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.2704467773438	2	587.269813	1172.52507	-0.62546	-0.00036731	1.2244	0.00071904	0.59891	0.00035172	587.2699929646649	60.807	0.8811	60.601	60.336	61.217	-0.20599					54	21	4	0	0	0	0.025498	1	6770	6770		145.16	59.995	1	1485600			17731	9394	12351	12377	19948	19948					-0.05428919567521007
FSYRDVNSW	9	Unmodified	_FSYRDVNSW_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.27001953125	2	587.269813	1172.52507	-1.3548	-0.00079566	1.858	0.0010912	0.50318	0.0002955	587.2703677993462	60.819	0.84113	60.565	60.212	61.053	-0.25373					59	20	4	0	0	0	0.056725	1	6771	6771		126.24	58.749	1	1469000			17732	9394	12351	12377	19949	19949					-0.05428919567521007
FSYRDVNSW	9	Unmodified	_FSYRDVNSW_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	587.269813	1172.52507	-1.2958	-0.00076099	3.7015	0.0021738	2.4056	0.0014128	587.271700010772	61.178	0.48203	60.964	60.756	61.238	-0.2134	0.19944	0.0018951	NaN	145.16	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189970			17733	9394	12351	12377							-0.05428919567521007
FSYRDVNSW	9	Unmodified	_FSYRDVNSW_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	587.269813	1172.52507	0.053681	3.1525E-05	2.3434	0.0013762	2.3971	0.0014078	587.2710394634869	60.858	0.41724	60.929	60.714	61.131	0.071125	0.1645	0.00030011	NaN	145.16	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192100			17734	9394	12351	12377							-0.05428919567521007
FSYSSSLACS	10	Unmodified	_FSYSSSLACS_					0	0	0			REV__ENST00000358120.2_1_1:248261979-248262807:+|nuORF	REV__ENST00000358120.2_1_1:248261979-248262807:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.287841796875	2	526.223682	1050.43281	0.29018	0.0001527	-4.1666	-0.0021926	-3.8764	-0.0020399	526.2210833435054	68.278	0.51923	68.045	67.797	68.316	-0.23376					28	12	3	0	0	0	0.03519	1	7902	7902		34.173	0	1	458310	+		17735	30848	12352	12378	19950	19950					-0.09038765696072915
FSYSVEANV	9	Unmodified	_FSYSVEANV_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2981262207031	2	508.24019	1014.46583	-0.42688	-0.00021696	-2.5891	-0.0013159	-3.016	-0.0015328	508.73842125179306	26.765	0.21779	26.597	26.42	26.638	-0.16816					5	4	2	0	0	0	0.024495	1	1409	1409		26.693	0	1	22113	+		17736	22525	12353	12379	19951	19951					-0.0408281558170529
FSYWWRRKQLV	11	Unmodified	_FSYWWRRKQLV_					0	0	0		nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.6167602539062	3	523.62101	1567.8412	-0.090206	-4.7234E-05	-2.8339	-0.0014839	-2.9241	-0.0015311	523.6193332958957	17.804	0.39915	17.597	17.414	17.813	-0.20669					17	7	3	0	0	0	1.1077	1	222	222		9.2118	3.2108	1	108770			17737	7206	12354	12380	19952	19952					0.07999498670756111
FTAAAFGAER	10	Unmodified	_FTAAAFGAER_					0	0	0			REV__ENST00000557055.5_1_14:81893460-81902769:-|nuORF	REV__ENST00000557055.5_1_14:81893460-81902769:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2823486328125	2	520.761623	1039.50869	-0.79782	-0.00041547	-3.4209	-0.0017815	-4.2187	-0.0021969	520.7597743222785	21.953	1.3125	21.751	20.833	22.146	-0.20198					45	26	2	0	0	0	0.03519	1	754	754		30.318	6.115	1	28306	+		17738	35058	12355	12381	19953	19953					-0.009480007336378549
FTAAGIQLF	9	Unmodified	_FTAAGIQLF_					0	0	0			REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.27880859375	2	484.26601	966.517468	-0.0097362	-4.7149E-06	1.113	0.00053901	1.1033	0.00053429	484.2665660778336	94.275	0.95211	94.275	93.967	94.919	0					36	22	2	0	0	0	0.024487	1	11976	11976		11.511	3.2797	1	193530	+		17739	31842	12356	12382	19954	19954					0.03286972902844809
FTAAGIQLF	9	Unmodified	_FTAAGIQLF_					0	0	0			REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.26601	966.517468	-0.2932	-0.00014199	1.5685	0.00075959	1.2753	0.0006176	484.2667684402922	94.177	0.95869	94.176	93.951	94.91	-0.00023651	-0.042183	0.00026887	NaN	11.511	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168440	+		17740	31842	12356	12382							0.03286972902844809
FTAAGIQLF	9	Unmodified	_FTAAGIQLF_					0	0	0			REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.26601	966.517468	0.32379	0.0001568	0.8832	0.00042771	1.207	0.0005845	484.2664651316932	94.362	0.58093	94.24	93.886	94.467	-0.12215	0.02119	-0.0003949	NaN	11.511	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150990	+		17741	31842	12356	12382							0.03286972902844809
FTAAGYRSL	9	Unmodified	_FTAAGYRSL_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP;REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.78497314453125	2	493.258717	984.50288	0.38293	0.00018889	2.7383	0.0013507	3.1212	0.0015396	493.2600460818911	41.535	0.84045	41.535	41.016	41.856	0					56	23	3	0	0	0	0.023473	1	3718	3718		75.043	6.2565	1	2490900	+	+	17742	19526;22909	12357	12383	19955	19955					0.010009007547182591
FTAKVFMP	8	Unmodified	_FTAKVFMP_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7690734863281	2	470.751682	939.48881	0.75061	0.00035335	-0.53519	-0.00025194	0.21542	0.00010141	470.75113785362964	25.141	0.37038	25.221	25.006	25.377	0.080088					12	8	2	0	0	0	0.027866	1	1117	1117		25.45	1.2474	1	58095	+		17743	36597	12358	12384	19956	19956					0.016645320020757026
FTALRPLKT	9	Unmodified	_FTALRPLKT_					0	0	0			REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.8231811523438	2	523.821484	1045.62842	2.6902	0.0014092	0.47225	0.00024738	3.1624	0.0016566	523.8215583736372	18.741	0.64468	18.499	18.274	18.919	-0.24256					27	12	3	0	0	0	0.67687	1	315	315		47.657	1.7054	1	372260	+		17744	20003	12359	12385	19957	19957					0.1074261261094307
FTARMLTY	8	Unmodified	_FTARMLTY_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75384521484375	2	501.757495	1001.50044	-1.1995	-0.00060184	-2.2253	-0.0011166	-3.4248	-0.0017184	502.25780227571005	29.243	0.57975	29.243	28.99	29.57	0					19	14	2	0	0	0	0.027866	1	1737	1737		30.504	0	1	76833	+		17745	27813	12360	12386	19958	19958					-0.0002527097459505967
FTARPLVQT	9	Unmodified	_FTARPLVQT_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8135986328125	2	516.795466	1031.57638	-0.48487	-0.00025058	1.2346	0.00063804	0.74973	0.00038746	516.7955667967217	60.234	0.60165	60.034	59.795	60.397	-0.20016					23	15	2	0	0	0	0.024484	1	6937	6937		30.318	10.287	1	540320			17746	5597	12361	12387	19959	19959					0.06185449197187154
FTASHLLIQ	9	Unmodified	_FTASHLLIQ_					0	0	0			REV__ENST00000441966.1_1_6:29297957-29298365:-|nuORF	REV__ENST00000441966.1_1_6:29297957-29298365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2703857421875	2	515.290017	1028.56548	-1.2565	-0.00064745	3.7933	0.0019547	2.5369	0.0013072	515.7929969600482	50.873	0.47671	50.96	50.75	51.227	0.087006					24	12	3	0	0	0	0.024021	1	5302	5302		58.782	7.4465	1	478800	+		17747	32553	12362	12388	19960	19960					0.05234046822920391
FTCEILAILKL	11	Unmodified	_FTCEILAILKL_					0	0	0		ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.916748046875	3	421.917554	1262.73083	0.98351	0.00041496	-2.7631	-0.0011658	-1.7795	-0.00075082	421.91623567655034	19.2	0.76648	19.2	18.922	19.689	0					42	15	4	0	0	0	0.75915	1	384	384		60.167	24.989	1	454120			17748	9586	12363	12389	19961	19961					0.10997517567534487
FTCEILAILKL	11	Unmodified	_FTCEILAILKL_					0	0	0		ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	421.917554	1262.73083	-0.13346	-5.6308E-05	-1.7756	-0.00074916	-1.9091	-0.00080546	421.916689006009	19.442	0.9147	19.323	19.052	19.967	-0.11872	-0.0050633	0.0015573	NaN	60.167	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405170			17749	9586	12363	12389							0.10997517567534487
FTCGVPSGPW	10	Unmodified	_FTCGVPSGPW_					0	0	0			REV__ENST00000023939.8_1_20:55093424-55093661:+|nuORF	REV__ENST00000023939.8_1_20:55093424-55093661:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7589721679688	2	525.739302	1049.46405	-0.68159	-0.00035834	4.066	0.0021377	3.3844	0.0017793	525.7405146021031	57.185	0.24827	57.017	56.823	57.071	-0.1672					9	6	2	0	0	0	0.03519	1	6226	6226		49.442	15.926	1	264710	+		17750	29260	12364	12390	19962	19962					-0.05870147871314657
FTCKSCGRVH	10	Unmodified	_FTCKSCGRVH_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2677612304688	2	569.268235	1136.52192	-0.21662	-0.00012331	-0.93033	-0.00052961	-1.1469	-0.00065292	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	1.0508	1	762	762		39.253	0	1	3402100			17751	3475	12365	12391	19963	19963					-0.04088209217525218
FTCYLEEMVL	10	Unmodified	_FTCYLEEMVL_					0	0	0		ENST00000338910.8_1_13:20277187-20277373:-|nuORF	ENST00000338910.8_1_13:20277187-20277373:-|nuORF	ENST00000338910.8_1_13:20277187-20277373:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.8917236328125	3	416.527737	1246.56138	-0.66463	-0.00027684	-1.8324	-0.00076324	-2.497	-0.0010401	416.5264408185892	38.098	0.29285	37.919	37.775	38.068	-0.17929					17	8	3	0	0	0	0.03519	1	3116	3116		16.717	0	1	184400			17752	12450	12366	12392	19964	19964					-0.052035467773521304
FTCYLVAD	8	Unmodified	_FTCYLVAD_					0	0	0		ENST00000498068.1_1_4:174340755-174340953:-|nuORF	ENST00000498068.1_1_4:174340755-174340953:-|nuORF	ENST00000498068.1_1_4:174340755-174340953:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2721252441406	2	466.215129	930.415705	0.23018	0.00010731	4.0785	0.0019015	4.3087	0.0020088	466.2168071003305	36.056	2.0723	35.858	34.899	36.972	-0.19829					83	54	2	0	0	0	0.027866	1	2821	2821		57.811	15.337	1	496190			17753	15614	12367	12393	19965	19965					-0.05228641511223486
FTDAEYRSVR	10	Unmodified	_FTDAEYRSVR_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.20709228515625	3	415.207043	1242.5993	1.7008	0.00070619	-1.4173	-0.00058846	0.28355	0.00011773	415.2064087704961	36.709	0.87402	36.5	36.201	37.075	-0.2092					60	21	4	0	0	0	0.96822	1	2875	2875		49.536	3.5638	1	1594600	+		17754	37579;20657	12368	12394	19966	19966					-0.012295764760210659
FTDAEYRSVR	10	Unmodified	_FTDAEYRSVR_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	415.207043	1242.5993	1.7008	0.00070619	-1.4173	-0.00058846	0.28355	0.00011773	415.2064087704961	36.709	0.87402	36.5	36.201	37.075	-0.2092	-0.039487	-0.0016636	NaN	49.536	60	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1594600	+		17755	37579;20657	12368	12394							-0.012295764760210659
FTDAGFEHY	9	Unmodified	_FTDAGFEHY_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.730224609375	2	543.729989	1085.44543	-0.0094033	-5.1128E-06	0.27642	0.0001503	0.26701	0.00014518	543.7301026431338	51.689	0.84517	51.57	51.281	52.126	-0.11875					57	22	4	0	0	0	0.012965	3	5342	5317;5330;5342		221.53	109.89	1	3810100			17756	1660	12369	12395	19967;19968;19969	19969					-0.09387986241517865
FTDAGFEHY	9	Unmodified	_FTDAGFEHY_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.7302856445312	2	543.729989	1085.44543	-2.196	-0.0011941	2.1332	0.0011599	-0.062844	-3.417E-05	543.7310649479768	51.989	0.99269	51.72	51.4	52.393	-0.26904					66	26	4	0	0	0	0.014013	4	5376	5353;5364;5376;5389		214.25	114.87	1	3842100			17757	1660	12369	12395	19970;19971;19972;19973	19972					-0.09387986241517865
FTDAGFEHY	9	Unmodified	_FTDAGFEHY_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.7301635742188	2	543.729989	1085.44543	0.035406	1.9251E-05	-0.063525	-3.454E-05	-0.028119	-1.5289E-05	543.7299664213136	51.752	0.73644	51.568	51.298	52.035	-0.18404					57	19	4	0	0	0	0.012965	3	5334	5321;5334;5347		187.63	88.258	1	3804300			17758	1660	12369	12395	19974;19975;19976	19975					-0.09387986241517865
FTDEEGYGRY	10	Unmodified	_FTDEEGYGRY_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3471092-3471287:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	618.7633666992188	2	618.762017	1235.50948	-1.076	-0.00066581	0.36931	0.00022851	-0.70673	-0.0004373	618.7622356143263	44.136	1.3779	44.031	43.701	45.079	-0.10468					82	36	4	0	0	0	9.7956E-06	3	4104	4088;4104;4118		223.88	144.17	1	5075900			17759	9229	12370	12396	19977;19978;19979	19978					-0.09885250875231577
FTDEEGYGRY	10	Unmodified	_FTDEEGYGRY_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3471092-3471287:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	618.7604370117188	2	618.762017	1235.50948	-1.7162	-0.0010619	1.1224	0.00069447	-0.59381	-0.00036742	618.7626277398816	44.321	1.0444	44.077	43.79	44.835	-0.2444					80	27	5	0	0	0	4.4598E-06	3	4105	4105;4117;4128		239.13	159.41	1	4512200			17760	9229	12370	12396	19980;19981;19982	19980					-0.09885250875231577
FTDEEGYGRY	10	Unmodified	_FTDEEGYGRY_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3471092-3471287:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	618.7611694335938	2	618.762017	1235.50948	-1.0379	-0.00064222	0.60871	0.00037665	-0.4292	-0.00026557	618.7623039553314	44.343	1.1877	44.124	43.826	45.014	-0.21939					75	31	4	0	0	0	4.4598E-06	3	4111	4111;4123;4134		239.13	151.43	1	4907600			17761	9229	12370	12396	19983;19984;19985	19983					-0.09885250875231577
FTDEEVDELY	10	Unmodified	_FTDEEVDELY_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;ENST00000431574.1_1_6:33306912-33307269:+|nuORF	ENSG00000101608|ENST00000217652|MYL12A;ENST00000431574.1_1_6:33306912-33307269:+|nuORF	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	630.2698974609375	2	630.269341	1258.52413	-0.34836	-0.00021956	-0.11241	-7.085E-05	-0.46077	-0.00029041	630.2691878442672	70.803	0.58756	70.531	70.427	71.015	-0.27184					31	14	3	0	0	0	0.60198	1	8255	8255		76.774	2.5191	1	839160			17762	2340;14188	12371	12397	19986	19986					-0.09479223517746505
FTDESYLELY	10	Unmodified	_FTDESYLELY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.29052734375	2	640.290076	1278.5656	-1.0392	-0.0006654	1.1453	0.00073335	0.10613	6.7953E-05	640.2905976564729	82.45	1.04	82.23	81.871	82.911	-0.22016					71	23	5	0	0	0	0.0063069	3	9940	9917;9927;9940		176.41	66.074	1	1848300			17763	8200	12372	12398	19987;19988;19989	19989					-0.06254042758428113
FTDESYLELY	10	Unmodified	_FTDESYLELY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.2908325195312	2	640.290076	1278.5656	0.072656	4.6521E-05	-0.16829	-0.00010775	-0.095631	-6.1232E-05	640.2898070124272	82.441	0.8664	82.261	81.898	82.765	-0.18079					59	19	4	0	0	0	0.05	3	9947	9925;9934;9947		148.04	59.4	1	1921500			17764	8200	12372	12398	19990;19991;19992	19992					-0.06254042758428113
FTDESYLELY	10	Unmodified	_FTDESYLELY_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.2900390625	2	640.290076	1278.5656	-1.1084	-0.00070967	1.1355	0.00072705	0.027144	1.738E-05	640.2906371339624	82.385	1.2095	82.245	81.913	83.123	-0.14014					72	27	4	0	0	0	0.05	3	9913	9903;9913;9926		148.04	59.4	1	2029600			17765	8200	12372	12398	19993;19994;19995	19994					-0.06254042758428113
FTDFREVCS	9	Unmodified	_FTDFREVCS_					0	0	0			REV__nc|ENSG00000197429|Q9Y573-2|IPP	REV__nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.2445068359375	2	552.244949	1102.47534	-0.54766	-0.00030244	-0.16802	-9.2787E-05	-0.71568	-0.00039523	552.2446842414154	43.78	1.403	43.675	42.661	44.064	-0.10468					77	37	3	0	0	0	0.56934	1	4046	4046		54.776	11.912	1	1262500	+		17766	28302	12373	12399	19996	19996					-0.07179370567814658
FTDGIIEWR	9	Unmodified	_FTDGIIEWR_					0	0	0		chr16:84498111-84500121|156|19.12|0.34|5.83|-|2|TE_info:L1MB5,L1MB5_dup7895,L1,LINE,donor,-,84500121,84500481|MEAK7,None|3	chr16:84498111-84500121|156|19.12|0.34|5.83|-|2|TE_info:L1MB5,L1MB5_dup7895,L1,LINE,donor,-,84500121,84500481|MEAK7,None|3	chr16:84498111-84500121|156|19.12|0.34|5.83|-|2|TE_info:L1MB5,L1MB5_dup7895,L1,LINE,donor,-,84500121,84500481|MEAK7,None|3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.3011474609375	2	568.790381	1135.56621	-0.40061	-0.00022786	2.7215	0.001548	2.3209	0.0013201	569.293093299387	67.336	0.47857	67.048	66.749	67.227	-0.28834					14	11	2	0	0	0	0.023417	1	7987	7987		68.787	4.5796	1	96760			17767	352	12374	12400	19997	19997					0.003848414719413995
FTDGQQLY	8	Unmodified	_FTDGQQLY_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.22711181640625	2	486.227082	970.439611	-0.40551	-0.00019717	0.77949	0.00037901	0.37397	0.00018184	486.2272654756714	54.701	0.94905	54.555	54.173	55.123	-0.14609					67	25	4	0	0	0	0.33369	1	5833	5833		106.42	24.11	1	2335700			17768	1333	12375	12401	19998	19998					-0.04679084753195184
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2442626953125	2	529.245472	1056.47639	-1.0722	-0.00056747	-0.18945	-0.00010027	-1.2617	-0.00066773	529.2452501666068	62.552	0.56047	62.368	62.035	62.596	-0.18386					39	18	3	0	0	0	0.10174	1	7055	7055		110.12	36.145	1	3347200			17769	38149	12376	12402	19999	19999					-0.049588329272637566
FTDIDGQVY	9	Unmodified	_FTDIDGQVY_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.245472	1056.47639	-0.33048	-0.0001749	-0.94865	-0.00050207	-1.2791	-0.00067697	529.2448446623096	62.635	0.60346	62.414	62.045	62.648	-0.22097	-0.014892	-0.00041177	NaN	110.12	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2774400			17770	38149	12376	12402							-0.049588329272637566
FTDIESLIVDI	11	Unmodified	_FTDIESLIVDI_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.520751953125	3	422.227221	1263.65983	-0.08013	-3.3833E-05	-1.2547	-0.00052977	-1.3348	-0.00056361	422.22666709794163	31.508	0.73488	31.267	30.915	31.649	-0.24109					35	18	3	0	0	0	0.024743	1	2144	2144		17.833	0	1	269590	+		17771	20677	12377	12403	20000	20000					0.03855096063739438
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.8060913085938	2	576.806031	1151.59751	-0.60142	-0.0003469	0.22319	0.00012874	-0.37823	-0.00021817	576.8059114326624	27.238	0.84694	27.081	26.758	27.605	-0.15664					53	19	4	0	0	0	0.062622	1	1465	1465		124.08	53.264	1	850020			17772	4224	12378	12404	20001	20001					0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.806031	1151.59751	-0.38031	-0.00021936	0.099699	5.7507E-05	-0.28061	-0.00016186	576.8058829936815	27.204	0.80863	26.962	26.701	27.509	-0.24217	-0.015413	-0.00022908	NaN	124.08	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	961260			17773	4224	12378	12404							0.027774145060675437
FTDKKTHLY	9	Unmodified	_FTDKKTHLY_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.806031	1151.59751	-0.82826	-0.00047774	0.53071	0.00030612	-0.29755	-0.00017163	576.8061878983813	27.057	0.89091	26.888	26.638	27.528	-0.16816	-0.08886	0.00026814	NaN	124.08	60	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	800310			17774	4224	12378	12404							0.027774145060675437
FTDLNNYDEY	10	Unmodified	_FTDLNNYDEY_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.2675170898438	2	647.267133	1292.51971	-2.7076	-0.0017525	2.5577	0.0016555	-0.14986	-9.6998E-05	647.268702181255	64.623	0.87045	64.388	64.059	64.93	-0.2345					54	21	4	0	0	0	0.0044938	1	7355	7355		181.41	106.36	1	1709700			17775	3249	12379	12405	20002	20002					-0.11484687940628646
FTDLNNYDEY	10	Unmodified	_FTDLNNYDEY_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	647.267133	1292.51971	-0.057771	-3.7393E-05	0.13133	8.5003E-05	0.073555	4.761E-05	647.2671348714575	64.636	0.79633	64.433	64.144	64.94	-0.20254	0.013093	-0.0015997	NaN	181.41	55	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1414800			17776	3249	12379	12405							-0.11484687940628646
FTDLNNYDEY	10	Unmodified	_FTDLNNYDEY_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	647.267133	1292.51971	-1.1161	-0.00072241	0.96181	0.00062255	-0.15428	-9.9861E-05	647.2676659848426	64.694	0.86975	64.439	64.152	65.022	-0.25563	0.018584	-0.00052459	NaN	181.41	56	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1749000			17777	3249	12379	12405							-0.11484687940628646
FTDLPNPIIV	10	Unmodified	_FTDLPNPIIV_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.7960815429688	2	564.818607	1127.62266	-0.68246	-0.00038546	-3.6487	-0.0020609	-4.3312	-0.0024463	564.8164096625515	68.829	0.49052	68.829	68.641	69.131	0					20	12	2	0	0	0	0.03519	1	8294	8294		54.776	24.935	1	180020	+		17778	22371	12380	12406	20003	20003					0.06395469308586144
FTDLPNPIIV	10	Unmodified	_FTDLPNPIIV_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.7952270507812	2	564.818607	1127.62266	-0.67148	-0.00037926	-3.322	-0.0018763	-3.9934	-0.0022556	564.8166620778618	68.873	0.48868	68.888	68.682	69.171	0.015121					25	12	3	0	0	0	0.03519	1	8222	8222		35.618	18.253	1	204370	+		17779	22371	12380	12406	20004	20004					0.06395469308586144
FTDLYTYH	8	Unmodified	_FTDLYTYH_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.240478515625	2	530.242732	1058.47091	-0.090946	-4.8223E-05	-3.2825	-0.0017405	-3.3735	-0.0017888	530.2409838189699	107.43	1.1014	107.43	106.37	107.47	0.0018311					68	32	3	0	0	0	0.93274	1	13695	13695		47.916	1.9434	1	407140	+		17780	25654	12381	12407	20005	20005					-0.055985117190857636
FTDNQILLK	9	Unmodified	_FTDNQILLK_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3167114257812	2	546.308406	1090.60226	-0.51218	-0.00027981	-2.5494	-0.0013927	-3.0615	-0.0016725	546.3067131631727	91.681	0.17313	91.558	91.456	91.629	-0.12341					9	3	3	0	0	0	0.024495	1	11262	11262		42.396	11.892	1	58207			17781	9362	12382	12408	20006	20006					0.06058298648804339
FTDPFFMVES	10	Unmodified	_FTDPFFMVES_					0	0	0		ENSG00000143105|ENST00000369771|KCNA10	ENSG00000143105|ENST00000369771|KCNA10	ENSG00000143105|ENST00000369771|KCNA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.23529052734375	3	407.182847	1218.52671	-0.7072	-0.00028796	4.3298	0.001763	3.6226	0.001475	407.18475935020604	29.234	0.43371	28.989	28.796	29.229	-0.24524					17	9	2	0	0	0	0.03519	1	1790	1790		10.587	0	1	87568			17782	5608	12383	12409	20007	20007					-0.0738104659376404
FTDPGQVAY	9	Unmodified	_FTDPGQVAY_					0	0	0		ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.2348327636719	2	499.234907	996.455261	-0.35654	-0.000178	1.8356	0.00091638	1.479	0.00073838	499.23496341148865	57.114	1.1287	56.89	56.544	57.672	-0.2248					49	29	3	0	0	0	0.18915	2	6215	6204;6215		90.777	27.798	1	5307400			17783	8025	12384	12410	20008;20009	20009					-0.04310798236133451
FTDPRTMGY	9	Unmodified	_FTDPRTMGY_					0	0	0		ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.247314453125	2	544.247492	1086.48043	-0.83276	-0.00045323	0.77746	0.00042313	-0.055298	-3.0096E-05	544.2477592691918	52.445	1.3838	52.326	51.575	52.959	-0.11875					71	35	3	0	0	0	0.11727	4	5454	5429;5442;5454;5466		106.68	43.806	1	3545500			17784	5434	12385	12411	20010;20011;20012;20013	20012					-0.05935066705205827
FTDPRTMGY	9	Unmodified	_FTDPRTMGY_					0	0	0		ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2477416992188	2	544.247492	1086.48043	-0.47582	-0.00025896	0.32313	0.00017586	-0.15269	-8.31E-05	544.2475288737356	52.718	1.4111	52.459	51.701	53.112	-0.25838					78	36	3	0	0	0	0.11727	4	5483	5461;5471;5483;5496		106.68	37.896	1	3579800			17785	5434	12385	12411	20014;20015;20016;20017	20016					-0.05935066705205827
FTDPRTMGY	9	Unmodified	_FTDPRTMGY_					0	0	0		ENST00000567697.1_1_16:8904837-8941679:+|nuORF;ENSG00000140650|ENST00000268261|PMM2	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	ENST00000567697.1_1_16:8904837-8941679:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.2478637695312	2	544.247492	1086.48043	-0.70881	-0.00038577	0.71948	0.00039158	0.010672	5.8083E-06	544.2477257684061	52.512	1.5449	52.323	51.663	53.208	-0.18981					77	39	3	0	0	0	0.079716	4	5453	5441;5453;5466;5479		117.81	60	1	2438400			17786	5434	12385	12411	20018;20019;20020;20021	20019					-0.05935066705205827
FTDPTPIL	8	Unmodified	_FTDPTPIL_					0	0	0			REV__ENST00000440915.1_1_8:100245318-100245837:-|nuORF	REV__ENST00000440915.1_1_8:100245318-100245837:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2456970214844	2	452.244744	902.474934	-0.21846	-9.8797E-05	1.089	0.00049248	0.87051	0.00039368	452.24510360219574	20.372	0.39397	20.267	20.03	20.424	-0.10477					19	7	3	0	0	0	0.96719	1	518	518		42.474	0	1	443050	+		17787	32535	12386	12412	20022	20022					0.019795777746367094
FTDPTPIL	8	Unmodified	_FTDPTPIL_					0	0	0			REV__ENST00000440915.1_1_8:100245318-100245837:-|nuORF	REV__ENST00000440915.1_1_8:100245318-100245837:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	452.244744	902.474934	-0.21846	-9.8797E-05	1.089	0.00049248	0.87051	0.00039368	452.24510360219574	20.372	0.39397	20.267	20.03	20.424	-0.10477	0.057129	-3.9566E-05	NaN	42.474	19	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443050	+		17788	32535	12386	12412							0.019795777746367094
FTDPVIGP	8	Unmodified	_FTDPVIGP_					0	0	0		ENST00000374754.8_1_10:35379356-35379569:-|nuORF	ENST00000374754.8_1_10:35379356-35379569:-|nuORF	ENST00000374754.8_1_10:35379356-35379569:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2225341796875	2	423.223811	844.433069	-1.5201	-0.00064334	-1.2245	-0.00051824	-2.7446	-0.0011616	423.22313832743345	29.476	1.2353	29.476	29.149	30.384	0					62	30	4	0	0	0	1.0572	1	1813	1813		28.254	1.4582	1	1619800			17789	13131	12387	12413	20023	20023					0.0046302208610313755
FTDQQKLIY	9	Unmodified	_FTDQQKLIY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.304931640625	2	578.305864	1154.59717	-0.47564	-0.00027506	-0.17701	-0.00010236	-0.65264	-0.00037743	578.3057573261386	52.074	1.0237	51.955	51.575	52.599	-0.11875					78	26	4	0	0	0	0.22902	3	5388	5388;5400;5412		85.161	30.015	1	8383500			17790	4305	12388	12414	20024;20025;20026	20024					0.026059947862222543
FTDQQKLIY	9	Unmodified	_FTDQQKLIY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.304931640625	2	578.305864	1154.59717	-2.0049	-0.0011594	1.2661	0.00073217	-0.7388	-0.00042725	578.3065658555986	52.322	0.91288	52.053	51.76	52.673	-0.26903					73	23	5	0	0	0	0.027092	4	5422	5410;5422;5434;5448		143.89	30.475	1	8210200			17791	4305	12388	12414	20027;20028;20029;20030	20028					0.026059947862222543
FTDQQKLIY	9	Unmodified	_FTDQQKLIY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3046875	2	578.305864	1154.59717	-0.37299	-0.0002157	-0.32373	-0.00018722	-0.69673	-0.00040292	578.3056401161373	52.168	1.0081	51.984	51.669	52.677	-0.18405					79	25	5	0	0	0	0.091713	3	5421	5397;5409;5421		113.41	30.012	1	7795300			17792	4305	12388	12414	20031;20032;20033	20033					0.026059947862222543
FTDREIDLY	9	Unmodified	_FTDREIDLY_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.2848510742188	2	586.285128	1170.5557	-0.21104	-0.00012373	0.3256	0.00019089	0.11456	6.7165E-05	586.2851507460962	59.222	1.2522	59.034	58.74	59.993	-0.18795					65	31	3	0	0	0	0.041068	4	6551	6530;6540;6551;6566		132.76	52.819	1	3657400			17793	5555	12389	12415	20034;20035;20036;20037	20036					-0.022751859731215518
FTDREIDLY	9	Unmodified	_FTDREIDLY_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.2841796875	2	586.285128	1170.5557	-0.37526	-0.00022001	0.44175	0.00025899	0.066487	3.8981E-05	586.2852787483714	59.108	1.1751	58.926	58.669	59.844	-0.18134					70	29	3	0	0	0	0.067814	3	6516	6516;6526;6538		122.18	45.402	1	3694900			17794	5555	12389	12415	20038;20039;20040	20038					-0.022751859731215518
FTDREIDLY	9	Unmodified	_FTDREIDLY_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.2850952148438	2	586.285128	1170.5557	-0.099832	-5.853E-05	0.071529	4.1937E-05	-0.028302	-1.6593E-05	586.2850408331503	59.264	1.3264	59.023	58.738	60.065	-0.24165					70	33	3	0	0	0	0.10464	3	6534	6524;6534;6548		109.48	38.1	1	3954600			17795	5555	12389	12415	20041;20042;20043	20042					-0.022751859731215518
FTDREIDLY	9	Unmodified	_FTDREIDLY_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	586.285128	1170.5557	-0.3896	-0.00022841	-0.19262	-0.00011293	-0.58221	-0.00034134	586.2847782557765	59.192	0.51705	59.192	58.965	59.482	0	0.097009	-0.00044086	NaN	132.76	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200390			17796	5555	12389	12415							-0.022751859731215518
FTDREIDLY	9	Unmodified	_FTDREIDLY_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	586.285128	1170.5557	0.21813	0.00012789	-1.0077	-0.00059079	-0.78954	-0.0004629	586.2843786648269	59.443	0.46983	59.243	58.958	59.427	-0.20016	0.14767	-0.0013966	NaN	132.76	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194970			17797	5555	12389	12415							-0.022751859731215518
FTDREIDLY	9	Unmodified	_FTDREIDLY_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	586.285128	1170.5557	0.97702	0.00057281	-1.3849	-0.00081195	-0.40788	-0.00023914	586.2844701712114	59.067	0.54303	59.153	58.921	59.464	0.085682	0.057908	-0.0018389	NaN	132.76	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186260			17798	5555	12389	12415							-0.022751859731215518
FTDSAIYNLQW	11	Unmodified	_FTDSAIYNLQW_					0	0	0		nc|ENSG00000211801|A0A0B4J279|TRAV21	nc|ENSG00000211801|A0A0B4J279|TRAV21	nc|ENSG00000211801|A0A0B4J279|TRAV21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.2181396484375	3	453.218949	1356.63502	0.80441	0.00036457	-3.486	-0.0015799	-2.6815	-0.0012153	453.2173920642358	59.454	0.79594	59.256	58.969	59.765	-0.19742					57	19	4	0	0	0	0.84303	1	6564	6564		55.084	0.74057	1	2471900			17799	18699	12390	12416	20044	20044					-0.02903539018984702
FTDSAIYNLQW	11	Unmodified	_FTDSAIYNLQW_					0	0	0		nc|ENSG00000211801|A0A0B4J279|TRAV21	nc|ENSG00000211801|A0A0B4J279|TRAV21	nc|ENSG00000211801|A0A0B4J279|TRAV21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.21807861328125	3	453.218949	1356.63502	0.44785	0.00020297	-3.2035	-0.0014519	-2.7557	-0.0012489	453.2174528960567	59.276	0.94852	59.095	58.75	59.699	-0.18134					64	23	5	0	0	0	0.84303	1	6565	6565		55.084	6.4824	1	2551900			17800	18699	12390	12416	20045	20045					-0.02903539018984702
FTDVNSILRY	10	Unmodified	_FTDVNSILRY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	614.3218994140625	2	614.322045	1226.62954	-1.0731	-0.00065925	0.56482	0.00034698	-0.50832	-0.00031227	614.3224667418775	68.397	1.7268	68.136	67.814	69.541	-0.26166					132	41	5	0	0	0	5.1566E-06	6	7904	7881;7892;7904;7916;7928;7940		232.83	138.2	1	17285000			17801	5031	12391	12417	20046;20047;20048;20049;20050;20051	20048					0.025287821891879503
FTDVNSILRY	10	Unmodified	_FTDVNSILRY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	614.322265625	2	614.322045	1226.62954	-0.033219	-2.0407E-05	-0.3212	-0.00019732	-0.35442	-0.00021773	614.3218608019062	68.371	2.203	68.129	67.788	69.991	-0.24242					135	53	5	0	0	0	4.4166E-06	6	7905	7883;7893;7905;7917;7929;7943		266.99	153.35	1	19519000			17802	5031	12391	12417	20052;20053;20054;20055;20056;20057	20054					0.025287821891879503
FTDVNSILRY	10	Unmodified	_FTDVNSILRY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	614.322021484375	2	614.322045	1226.62954	0.27669	0.00016998	-0.8501	-0.00052224	-0.57341	-0.00035226	614.3215535921044	68.328	2.0411	68.098	67.715	69.756	-0.23048					139	49	6	0	0	0	4.4166E-06	6	7901	7866;7877;7889;7901;7913;7926		237.44	141.63	1	20694000			17803	5031	12391	12417	20058;20059;20060;20061;20062;20063	20061					0.025287821891879503
FTDVRAAVY	9	Unmodified	_FTDVRAAVY_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-2|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2665405273438	2	521.271824	1040.5291	0.49665	0.00025889	-0.22603	-0.00011783	0.27062	0.00014107	521.2715499544873	50.758	0.74266	50.482	50.262	51.004	-0.27643					46	19	4	0	0	0	0.54416	1	5179	5179		56.434	6.9922	1	2136700			17804	3442	12392	12418	20064	20064					0.010451699261921021
FTDVRAAVY	9	Unmodified	_FTDVRAAVY_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-2|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2694091796875	2	521.271824	1040.5291	0.39789	0.00020741	-0.11219	-5.8479E-05	0.2857	0.00014893	521.2716305032574	50.625	0.97132	50.445	50.172	51.143	-0.18071					52	23	4	0	0	0	0.57016	1	5154	5154		54.722	5.2808	1	2420700			17805	3442	12392	12418	20065	20065					0.010451699261921021
FTDVTILSRA	10	Unmodified	_FTDVTILSRA_					0	0	0			REV__ENST00000594295.5_1_19:52569453-52569504:-|nuORF	REV__ENST00000594295.5_1_19:52569453-52569504:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2442626953125	2	561.811313	1121.60807	-0.4051	-0.00022759	3.1025	0.001743	2.6974	0.0015154	561.8129784210406	75.728	0.98074	75.456	75.144	76.125	-0.27266					52	24	4	0	0	0	0.03519	1	9029	9029		35.152	0	1	959320	+		17806	35774	12393	12419	20066	20066					0.05213397160491695
FTDYPKLQ	8	Unmodified	_FTDYPKLQ_					0	0	0		ENSG00000186113|ENST00000335605|OR5D14	ENSG00000186113|ENST00000335605|OR5D14	ENSG00000186113|ENST00000335605|OR5D14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7142028808594	2	506.260925	1010.5073	-0.0056529	-2.8618E-06	-2.3497	-0.0011896	-2.3553	-0.0011924	506.2603882533044	34.688	0.1199	34.464	34.379	34.499	-0.22412					4	2	2	0	0	0	0.027866	1	2566	2566		25.45	6.0902	1	26216			17807	9516	12394	12420	20067	20067					0.0024636517761109644
FTEAQLILT	9	Unmodified	_FTEAQLILT_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.271484375	2	518.289682	1034.56481	-0.77957	-0.00040404	1.9931	0.001033	1.2135	0.00062895	518.2906844693846	84.494	0.91531	84.421	84.091	85.007	-0.072769					49	21	3	0	0	0	0.024447	1	10631	10631		40.778	1.7567	1	171780	+		17808	36285	12395	12421	20068	20068					0.04891207383184337
FTEAQLILT	9	Unmodified	_FTEAQLILT_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.289682	1034.56481	-0.22483	-0.00011653	2.7039	0.0014014	2.4791	0.0012849	518.2914424379131	84.544	1.437	84.544	83.562	84.999	0	0.16591	0.0012621	NaN	32.812	49	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210220	+		17809	36285	12395	12421							0.04891207383184337
FTEAQLILT	9	Unmodified	_FTEAQLILT_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.289682	1034.56481	0.34359	0.00017808	-1.2354	-0.00064031	-0.89184	-0.00046223	518.2889153852115	84.449	0.37994	84.246	84.038	84.418	-0.20329	-0.13165	-0.0028214	NaN	32.812	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138430	+		17810	36285	12395	12421							0.04891207383184337
FTEAQLILT	9	Unmodified	_FTEAQLILT_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|155|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.289682	1034.56481	0.847	0.00043899	-0.51508	-0.00026696	0.33191	0.00017203	518.2895640573973	84.378	0.64077	84.219	83.932	84.573	-0.15869	-0.15874	-0.0020747	NaN	32.812	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90848	+		17811	36285	12395	12421							0.04891207383184337
FTEEFLNHS	9	Unmodified	_FTEEFLNHS_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.3438110351562	2	562.256371	1122.49819	-0.50813	-0.0002857	1.4088	0.00079212	0.90069	0.00050642	562.2575253206711	88.721	0.37797	88.55	88.379	88.757	-0.17054					12	8	2	0	0	0	0.024539	1	10841	10841		14.865	1.9057	1	45293			17812	5404	12396	12422	20069	20069					-0.058160281787195345
FTEEQAVLY	9	Unmodified	_FTEEQAVLY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2689208984375	2	550.268947	1098.52334	-0.59756	-0.00032882	0.31207	0.00017172	-0.28549	-0.0001571	550.2690955584096	65.103	1.6636	64.868	64.529	66.193	-0.2345					114	40	5	0	0	0	0.091713	5	7423	7401;7411;7423;7435;7448		113.41	31.241	1	12086000			17813	7747	12397	12423	20070;20071;20072;20073;20074	20072					-0.021979733761327225
FTEEQAVLY	9	Unmodified	_FTEEQAVLY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.26904296875	2	550.268947	1098.52334	-1.1814	-0.00065011	0.86307	0.00047492	-0.31836	-0.00017519	550.2693577708603	65.121	1.7392	64.919	64.577	66.317	-0.20254					104	42	4	0	0	0	0.016871	5	7420	7410;7420;7432;7444;7457		152.47	67.111	1	11937000			17814	7747	12397	12423	20075;20076;20077;20078;20079	20076					-0.021979733761327225
FTEEQAVLY	9	Unmodified	_FTEEQAVLY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2692260742188	2	550.268947	1098.52334	-0.60036	-0.00033036	0.27123	0.00014925	-0.32913	-0.00018111	550.2690397090045	65.158	1.2984	64.902	64.582	65.88	-0.25563					96	31	4	0	0	0	0.047345	6	7419	7397;7408;7419;7431;7444;7459		129.68	55.708	1	11073000			17815	7747	12397	12423	20080;20081;20082;20083;20084;20085	20082					-0.021979733761327225
FTEETVCLPV	10	Unmodified	_FTEETVCLPV_					0	0	0			REV__nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	REV__nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.277587890625	2	569.278457	1136.54236	-0.38749	-0.00022059	-1.1072	-0.0006303	-1.4947	-0.00085089	569.2773055914291	83.06	1.3771	82.921	82.088	83.465	-0.1386					94	31	4	0	0	0	0.941	1	9928	9928		51.335	5.3835	1	969920	+		17816	24295	12398	12424	20086	20086					-0.020447600767511176
FTEIGIHL	8	Unmodified	_FTEIGIHL_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.8130187988281	2	465.258185	928.501818	-0.87067	-0.00040509	-2.8776	-0.0013388	-3.7483	-0.0017439	465.2566558663263	37.877	0.39947	37.656	37.466	37.866	-0.22148					12	10	2	0	0	0	0.027866	1	3106	3106		29.842	18.331	1	154000			17817	9235	12399	12425	20087	20087					0.03470686385821864
FTEKTQRREW	10	Unmodified	_FTEKTQRREW_					0	0	0			REV__ENST00000546655.1_1_12:53645502-53645592:+|nuORF	REV__ENST00000546655.1_1_12:53645502-53645592:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.2605285644531	3	460.905476	1379.6946	-0.51043	-0.00023526	-0.11128	-5.129E-05	-0.62171	-0.00028655	460.905926610482	29.12	0.39016	28.948	28.766	29.156	-0.17258					11	8	2	0	0	0	0.03519	1	1777	1777		18.531	1.3643	1	33831	+		17818	34848	12400	12426	20088	20088					0.01993776715016793
FTEKTQRREW	10	Unmodified	_FTEKTQRREW_					0	0	0			REV__ENST00000546655.1_1_12:53645502-53645592:+|nuORF	REV__ENST00000546655.1_1_12:53645502-53645592:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	460.905476	1379.6946	-0.29629	-0.00013656	0.19917	9.1801E-05	-0.097118	-4.4762E-05	460.9056078804944	28.988	0.34162	28.839	28.615	28.956	-0.14952	-0.054609	9.5876E-05	NaN	24.232	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54066	+		17819	34848	12400	12426							0.01993776715016793
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.7412109375	2	573.740554	1145.46655	-0.13211	-7.5797E-05	-0.23616	-0.00013549	-0.36827	-0.00021129	573.7404142127469	66.12	0.83274	65.879	65.542	66.375	-0.24145					53	20	4	0	0	0	0.041068	2	7569	7569;7581		132.76	63.971	1	1704000			17820	5917	12401	12427	20089;20090	20089					-0.10036020932670908
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.7413330078125	2	573.740554	1145.46655	-0.77541	-0.00044488	0.39886	0.00022884	-0.37655	-0.00021604	573.7407366601435	66.082	0.82609	65.869	65.588	66.414	-0.21327					49	20	3	0	0	0	0.12914	1	7578	7578		104.06	21.752	1	1576000			17821	5917	12401	12427	20091	20091					-0.10036020932670908
FTEQWTDGY	9	Unmodified	_FTEQWTDGY_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.74072265625	2	573.740554	1145.46655	-0.53225	-0.00030537	0.24361	0.00013977	-0.28864	-0.0001656	573.7406758151515	66.168	0.77692	65.919	65.605	66.382	-0.24926					44	19	3	0	0	0	0.079716	1	7571	7571		117.81	56.839	1	1617800			17822	5917	12401	12427	20092	20092					-0.10036020932670908
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.2566528320312	2	611.256568	1220.49858	-1.0622	-0.00064928	1.0477	0.00064039	-0.014534	-8.884E-06	611.2571592238563	50.359	1.4375	50.253	49.933	51.37	-0.10558					102	37	5	0	0	0	0.0087688	5	5101	5101;5111;5122;5135;5150		298.95	199.58	1	10977000			17823	8425	12402	12428	20093;20094;20095;20096;20097	20093					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.2572021484375	2	611.256568	1220.49858	-0.069099	-4.2237E-05	0.37107	0.00022682	0.30197	0.00018458	611.2567455800215	50.659	1.4307	50.382	50.072	51.503	-0.27699					100	37	4	0	0	0	0.0090779	5	5163	5131;5140;5152;5163;5176		278.48	167.39	1	11469000			17824	8425	12402	12428	20098;20099;20100;20101;20102	20101					-0.10284653249505027
FTEQYNEQY	9	Unmodified	_FTEQYNEQY_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.2569580078125	2	611.256568	1220.49858	-0.015878	-9.7058E-06	0.33396	0.00020414	0.31809	0.00019443	611.2567526570807	50.481	1.3621	50.301	49.978	51.34	-0.18071					89	35	4	0	0	0	0.011521	4	5112	5112;5122;5134;5147		278.48	172.06	1	10934000			17825	8425	12402	12428	20103;20104;20105;20106	20103					-0.10284653249505027
FTEVALLMAL	10	Oxidation (M)	_FTEVALLM(Oxidation (M))AL_		FTEVALLM(1)AL		FTEVALLM(74)AL	0	0	1			REV__KCNK7|p.L246F|1|0.39|ENSG00000173338|chr11:65593193-65593193|G/A|missense_variant	REV__KCNK7|p.L246F|1|0.39|ENSG00000173338|chr11:65593193-65593193|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.30908203125	2	562.307018	1122.59948	-0.60248	-0.00033878	3.795	0.0021339	3.1925	0.0017952	562.3093187449479	69.113	1.6808	69.128	68.234	69.914	0.015129					111	43	4	0	0	0	0.62679	1	8216	8216		73.975	8.1716	1	5939300	+		17826	26768	12403	12429	20107	20107		791			0.0430870719962968
FTFACSLHESK	11	Unmodified	_FTFACSLHESK_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.25830078125	3	423.869262	1268.58596	0.60432	0.00025615	3.9747	0.0016848	4.579	0.0019409	423.871037914838	32.612	0.4183	32.42	32.118	32.536	-0.19261					20	9	3	0	0	0	0.024789	1	2251	2251		11.455	0	1	146450	+		17827	22676	12404	12430	20108	20108					-0.03759150579639936
FTFAGLKS	8	Unmodified	_FTFAGLKS_					0	0	0			REV__ENST00000370944.8_1_1:70771933-70779447:-|nuORF	REV__ENST00000370944.8_1_1:70771933-70779447:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.792724609375	2	435.739628	869.464704	-0.74209	-0.00032336	-3.9861	-0.0017369	-4.7282	-0.0020603	435.7379419610572	33.646	0.7534	33.48	33.038	33.791	-0.16565					39	18	3	0	0	0	0.027866	1	2341	2341		37.159	14.117	1	704520	+		17828	31144	12405	12431	20109	20109					0.02475014840035783
FTFLKQCIAH	10	Unmodified	_FTFLKQCIAH_					0	0	0			REV__ENSG00000123901|ENST00000243673|GPR83	REV__ENSG00000123901|ENST00000243673|GPR83	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.8395080566406	3	403.214593	1206.62195	-1.4398	-0.00058053	-4.4221	-0.0017831	-5.8618	-0.0023636	403.2125909892645	21.599	0.33912	21.386	21.167	21.506	-0.2128					11	6	2	0	0	0	0.03519	1	649	649		20.03	0	1	15747	+		17829	22718	12406	12432	20110	20110					0.026903513879233287
FTFLKQCIAH	10	Unmodified	_FTFLKQCIAH_					0	0	0			REV__ENSG00000123901|ENST00000243673|GPR83	REV__ENSG00000123901|ENST00000243673|GPR83	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	403.214593	1206.62195	0.90985	0.00036686	-8.0531	-0.0032471	-7.1433	-0.0028803	403.2110452109562	21.462	0.38179	21.285	21.016	21.397	-0.17721	-0.099931	-0.0015863	NaN	24.232	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42780	+		17830	22718	12406	12432							0.026903513879233287
FTFLKQCIAH	10	Unmodified	_FTFLKQCIAH_					0	0	0			REV__ENSG00000123901|ENST00000243673|GPR83	REV__ENSG00000123901|ENST00000243673|GPR83	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	403.214593	1206.62195	0.8432	0.00033999	-8.6826	-0.003501	-7.8394	-0.003161	403.2106414814193	21.675	0.4349	21.484	21.275	21.71	-0.19072	0.09893	-0.0023477	NaN	24.232	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20640	+		17831	22718	12406	12432							0.026903513879233287
FTFLLLVLDK	10	Unmodified	_FTFLLLVLDK_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	604.7947998046875	2	604.8681	1207.72165	-1.0724	-0.00064864	-3.1985	-0.0019346	-4.2708	-0.0025833	605.3655670525925	104.54	0.21291	104.53	104.38	104.6	-0.0015945					5	4	2	0	0	0	0.03519	1	13322	13322		30.318	16.864	1	14822	+		17832	23665	12407	12433	20111	20111					0.12609492273486467
FTFLLYKF	8	Unmodified	_FTFLLYKF_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8186645507812	2	539.802229	1077.5899	-0.051534	-2.7818E-05	-2.0617	-0.0011129	-2.1133	-0.0011407	539.8018664489653	74.339	0.21937	74.076	73.966	74.186	-0.26326					6	4	2	0	0	0	0.027866	1	8783	8783		31.955	8.9124	1	93604			17833	3370;10617	12408	12434	20112	20112					0.05421306976404594
FTFLLYKF	8	Unmodified	_FTFLLYKF_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.802229	1077.5899	1.4375	0.00077597	-4.6304	-0.0024995	-3.1929	-0.0017235	540.3030375303811	74.397	0.20935	74.397	74.256	74.466	0	0.16076	-0.00047681	NaN	94.006	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50181			17834	3370;10617	12408	12434							0.05421306976404594
FTFLRNQL	8	Unmodified	_FTFLRNQL_					0	0	0			REV__ENST00000330029.6_1_22:30165771-30165882:+|nuORF	REV__ENST00000330029.6_1_22:30165771-30165882:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7899169921875	2	519.790184	1037.56581	0.15947	8.289E-05	-1.1999	-0.00062369	-1.0404	-0.0005408	519.7894149712582	80.119	0.95617	79.973	79.616	80.572	-0.146					62	22	4	0	0	0	0.74904	2	9588	9567;9588		63.306	15.391	1	2671400	+		17835	30448	12409	12435	20113;20114	20114					0.04853466542749629
FTFPIILL	8	Unmodified	_FTFPIILL_					0	0	0			REV__ENSG00000181074|ENST00000641350|OR52N4	REV__ENSG00000181074|ENST00000641350|OR52N4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.30084228515625	2	482.299322	962.584091	-0.26065	-0.00012571	2.4157	0.0011651	2.1551	0.0010394	482.3003262984627	17.348	0.302	17.141	16.963	17.265	-0.20669					7	5	2	0	0	0	1.0574	1	166	166		9.4706	0.64823	1	65765	+		17836	27383	12410	12436	20115	20115					0.10130208464761381
FTFSLQLY	8	Unmodified	_FTFSLQLY_					0	0	0			REV__ENST00000226004.7_1_17:41845336-41845486:-|nuORF	REV__ENST00000226004.7_1_17:41845336-41845486:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.76373291015625	2	509.765843	1017.51713	-0.5593	-0.00028511	-4.2111	-0.0021467	-4.7704	-0.0024318	509.7637702657127	49.108	1.5791	49.007	48.358	49.938	-0.1008					162	41	7	0	0	0	0.50239	1	4884	4884		85.359	14.064	1	49106000	+		17837	29380	12411	12437	20116	20116					0.009075531829921601
FTFSPVIVF	9	Unmodified	_FTFSPVIVF_					0	0	0			REV__ENSG00000203989|ENST00000371402|RHOXF2B	REV__ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2471313476562	2	528.791861	1055.56917	0.38051	0.00020121	-3.0815	-0.0016295	-2.701	-0.0014282	528.790029548745	59.437	0.52558	59.188	58.97	59.495	-0.24842					20	12	2	0	0	0	0.024487	1	6536	6536		24.203	0	1	157180	+		17838	23229	12412	12438	20117	20117					0.04360716596761449
FTFTENWRPS	10	Unmodified	_FTFTENWRPS_					0	0	0			REV__ENSG00000139151|ENST00000266505|PLCZ1	REV__ENSG00000139151|ENST00000266505|PLCZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.78466796875	3	428.871772	1283.59349	-0.15865	-6.8041E-05	-3.2744	-0.0014043	-3.433	-0.0014723	428.8706444190465	26.929	0.66359	26.687	26.372	27.035	-0.24217					29	15	3	0	0	0	0.03519	1	1424	1424		23.378	1.5975	1	72000	+		17839	23917	12413	12439	20118	20118					-0.036966749876683025
FTGAKLLTV	9	Unmodified	_FTGAKLLTV_					0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.26123046875	2	475.289485	948.564418	0.13061	6.2078E-05	0.073737	3.5046E-05	0.20435	9.7125E-05	475.2894100977958	33.54	0.40285	33.309	33.036	33.439	-0.23107					19	9	3	0	0	0	0.023454	1	2401	2401		82.241	10.945	1	194930	+		17840	22892	12414	12440	20119	20119					0.08807832453987885
FTGAKLLTV	9	Unmodified	_FTGAKLLTV_					0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.289485	948.564418	-0.33455	-0.00015901	0.22336	0.00010616	-0.11119	-5.2845E-05	475.2893823432777	33.482	0.30976	33.282	33.094	33.404	-0.20019	-0.014891	-0.00012528	NaN	82.241	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289920	+		17841	22892	12414	12440							0.08807832453987885
FTGAKLLTV	9	Unmodified	_FTGAKLLTV_					0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.289485	948.564418	-1.0393	-0.00049398	1.0573	0.0005025	0.017923	8.5188E-06	475.2897405334636	33.465	0.32317	33.3	33.117	33.44	-0.16565	0.0028739	0.0006674	NaN	82.241	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259310	+		17842	22892	12414	12440							0.08807832453987885
FTGAPEASLL	10	Unmodified	_FTGAPEASLL_					0	0	0			REV__ENSG00000184557|ENST00000330871|SOCS3	REV__ENSG00000184557|ENST00000330871|SOCS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.2663879394531	2	503.266207	1004.51786	0.45836	0.00023068	-0.70104	-0.00035281	-0.24268	-0.00012213	503.26576945583906	81.939	1.1161	81.71	81.353	82.47	-0.2289					56	21	4	0	0	0	1.0002	1	9849	9849		45.972	0	1	1750900	+		17843	27681	12415	12441	20120	20120					0.01578347832048621
FTGEDEDM	8	Unmodified	_FTGEDEDM_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2879333496094	2	472.171115	942.327678	-0.17132	-8.0892E-05	2.7504	0.0012987	2.5791	0.0012178	472.17245627642893	94.222	0.15485	94.228	94.131	94.286	0.0059814					7	3	3	0	0	0	0.027866	1	11902	11902		28.254	19.432	1	67617			17844	6870	12416	12442	20121	20121					-0.14579306892494515
FTGLNSLSLLL	11	Unmodified	_FTGLNSLSLLL_					0	0	0			REV__ENST00000264657.9_1_17:40467570-40467729:-|nuORF	REV__ENST00000264657.9_1_17:40467570-40467729:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3428344726562	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0592	1	11558	11558		22.58	1.6327	1	15816000	+		17845	29725	12417	12443	20122	20122					0.09415427371459373
FTGLRLANKFV	11	Unmodified	_FTGLRLANKFV_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3692626953125	2	633.371872	1264.72919	-2.2268	-0.0014104	-1.9925	-0.001262	-4.2193	-0.0026724	633.3704900800258	93.216	1.2663	93.076	92.131	93.397	-0.13996					96	29	4	0	0	0	0.99553	1	11494	11494		37.812	4.9991	1	1660400	+		17846	21300	12418	12444	20123	20123					0.1074164459378153
FTGLRLANKFV	11	Unmodified	_FTGLRLANKFV_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3699340820312	2	633.371872	1264.72919	-0.5109	-0.00032359	-3.826	-0.0024233	-4.3369	-0.0027469	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.98904	2	11929	11929;11953		39.253	6.4404	1	9245900	+		17847	21300	12418	12444	20124;20125	20124					0.1074164459378153
FTGLRLANKFV	11	Unmodified	_FTGLRLANKFV_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.369384765625	2	633.371872	1264.72919	-0.4938	-0.00031276	-4.0259	-0.0025499	-4.5197	-0.0028627	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.87847	1	11976	11976		52.937	6.9645	1	9845500	+		17848	21300	12418	12444	20126	20126					0.1074164459378153
FTGPWSVIT	9	Unmodified	_FTGPWSVIT_					0	0	0			REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.77911376953125	2	504.263468	1006.51238	-0.12382	-6.2438E-05	-3.8612	-0.0019471	-3.985	-0.0020095	504.2614183807475	70.93	0.72433	70.673	70.439	71.164	-0.25713					37	17	3	0	0	0	0.024263	1	8330	8330		51.335	22.165	1	1699600	+		17849	20466	12419	12445	20127	20127					0.009386690402379827
FTGSLEQQVQH	11	Unmodified	_FTGSLEQQVQH_					0	0	0			REV__ENSG00000116688|ENST00000235329|MFN2	REV__ENSG00000116688|ENST00000235329|MFN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.23834228515625	3	425.210565	1272.60986	-0.36106	-0.00015353	-0.60172	-0.00025586	-0.96278	-0.00040938	425.2102357516646	29.4	0.76707	29.228	28.893	29.66	-0.17258					34	17	3	0	0	0	0.02477	1	1829	1829		28.577	3.4507	1	293400	+		17850	22291	12420	12446	20128	20128					-0.015535938215634815
FTGSVSFPIL	10	Unmodified	_FTGSVSFPIL_					0	0	0			REV__ENST00000489521.1_1_3:139001563-139001731:+|nuORF	REV__ENST00000489521.1_1_3:139001563-139001731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8128662109375	2	534.292225	1066.5699	-0.28631	-0.00015297	-1.2381	-0.00066151	-1.5244	-0.00081448	534.2910477246784	103.74	0.6689	103.74	103.4	104.07	-0.0032196					28	15	3	0	0	0	0.03519	1	13270	13270		30.504	8.5438	1	139580	+		17851	33670	12421	12447	20129	20129					0.039275112458199146
FTGTIKLLNE	10	Unmodified	_FTGTIKLLNE_					0	0	0		ENSG00000072274|ENST00000360110|TFRC;TFRC|p.D242Ifs*9|1|0.42|ENSG00000072274|chr3:196069533-196069533|T/-|frameshift_variant	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.22998046875	2	568.321514	1134.62847	-0.77647	-0.00044128	0.47102	0.00026769	-0.30545	-0.00017359	568.3216630195211	40.239	0.38704	40.009	39.771	40.158	-0.23021					15	9	2	0	0	0	0.03519	1	3427	3427		19.104	0	1	157240			17852	1475	12422	12448	20130	20130					0.06654567820282864
FTGVGVSKEN	10	Unmodified	_FTGVGVSKEN_					0	0	0		ENST00000582809.5_2_17:60558486-60585777:+|nuORF	ENST00000582809.5_2_17:60558486-60585777:+|nuORF	ENST00000582809.5_2_17:60558486-60585777:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.787353515625	2	519.266739	1036.51892	-0.74684	-0.00038781	0.23291	0.00012094	-0.51392	-0.00026686	519.2663718157795	25.333	0.60806	25.106	24.623	25.231	-0.22683					21	10	3	0	0	0	0.03519	1	1157	1157		42.396	8.2236	1	101720			17853	17187	12423	12449	20131	20131					0.002125622009543804
FTGVHEPL	8	Unmodified	_FTGVHEPL_					0	0	0			REV__CXXC4|p.R232H|1|0.14|ENSG00000168772|chr4:104491108-104491108|C/T|missense_variant	REV__CXXC4|p.R232H|1|0.14|ENSG00000168772|chr4:104491108-104491108|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7792053222656	2	450.23471	898.454868	-0.68272	-0.00030739	-3.6276	-0.0016333	-4.3103	-0.0019407	450.23276937629777	30.45	0.58615	30.272	29.997	30.583	-0.17817					30	13	3	0	0	0	0.027866	1	1959	1959		54.765	12.29	1	142200	+		17854	19636	12424	12450	20132	20132					0.001578268346634104
FTHAAQHVW	9	Unmodified	_FTHAAQHVW_					0	0	0		ENST00000278426.7_2_11:57263521-57268513:-|nuORF	ENST00000278426.7_2_11:57263521-57268513:-|nuORF	ENST00000278426.7_2_11:57263521-57268513:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.7870483398438	2	548.769783	1095.52501	0.079838	4.3813E-05	1.2646	0.00069396	1.3444	0.00073778	548.7702073037918	66.108	0.1963	66.108	65.987	66.184	0					5	4	2	0	0	0	0.024436	1	7863	7863		23.042	0	1	88004			17855	11701	12425	12451	20133	20133					-0.018928747768768517
FTHAIINIQCY	11	Unmodified	_FTHAIINIQCY_					0	0	0			REV__ENSG00000187747|ENST00000345043|OR52B6	REV__ENSG00000187747|ENST00000345043|OR52B6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.259033203125	3	441.556907	1321.64889	-0.21226	-9.3723E-05	2.0334	0.00089785	1.8211	0.00080412	441.8924206477137	27.052	0.22345	27.039	26.911	27.134	-0.012983					9	5	3	0	0	0	0.024723	1	1408	1408		28.577	0	1	19266	+		17856	27968	12426	12452	20134	20134					0.0009341520847101492
FTHEDLPTL	9	Unmodified	_FTHEDLPTL_					0	0	0		ENSG00000186017|ENST00000452939|ZNF566;nc|ENSG00000186017|Q969W8-2|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.7692260742188	2	536.769114	1071.52368	0.1916	0.00010285	-0.12498	-6.7088E-05	0.06662	3.576E-05	536.7691021044403	87.097	1.4063	86.961	86.153	87.559	-0.13613					34	14	3	0	0	0	0.4752	1	10591	10591		60.972	9.7792	1	523960			17857	9505	12427	12453	20135	20135					-0.00922553656278069
FTHGGTVLF	9	Unmodified	_FTHGGTVLF_					0	0	0		ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.3050231933594	2	489.75581	977.497067	0.94109	0.00046091	0.43755	0.00021429	1.3786	0.0006752	489.7548141910878	71.345	0.57629	71.139	70.921	71.497	-0.20613					16	13	2	0	0	0	0.024436	1	8322	8322		30.504	5.0535	1	193720			17858	13287	12428	12454	20136	20136					0.007418022430442761
FTHGGTVLF	9	Unmodified	_FTHGGTVLF_					0	0	0		ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.75581	977.497067	-0.15118	-7.4041E-05	0.19133	9.3703E-05	0.040146	1.9662E-05	489.75568757309344	71.35	0.37882	71.361	71.2	71.579	0.010735	0.11091	-5.1347E-05	NaN	23.042	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139290			17859	13287	12428	12454							0.007418022430442761
FTHRGFLL	8	Unmodified	_FTHRGFLL_					0	0	0		nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.78125	2	495.779619	989.544686	0.17533	8.6923E-05	1.5367	0.00076187	1.712	0.00084879	495.7801236667535	90.497	2.8053	90.359	89.488	92.293	-0.13824					136	66	4	0	0	0	0.78609	1	11086	11086		60.294	1.512	1	1209800			17860	6470	12429	12455	20137	20137					0.049495012338979905
FTIAAAIAAS	10	Unmodified	_FTIAAAIAAS_					0	0	0			REV__ADRA2B|p.T12S|1|0.35|ENSG00000274286|chr2:96116116-96116116|T/A|missense_variant	REV__ADRA2B|p.T12S|1|0.35|ENSG00000274286|chr2:96116116-96116116|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.24493408203125	2	468.263468	934.512382	0.096948	4.5397E-05	-4.257	-0.0019934	-4.1601	-0.001948	468.2612136181005	103.74	0.15501	103.57	103.44	103.6	-0.16791					5	3	2	0	0	0	0.03519	1	12883	12883		19.997	9.1312	1	67147	+		17861	19080	12430	12456	20138	20138					0.04250669040209232
FTIHLMLQEI	10	Unmodified	_FTIHLMLQEI_					0	0	0		ENSG00000163006|ENST00000295124|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.22113037109375	3	415.56177	1243.66348	-0.21092	-8.7649E-05	3.4918	0.0014511	3.2809	0.0013634	415.5631782188148	24.183	0.51099	24.008	23.699	24.21	-0.17484					21	11	2	0	0	0	0.03519	1	1039	1039		19.263	1.4295	1	313420			17862	7024	12431	12457	20139	20139					0.05139487356586869
FTILEWVT	8	Unmodified	_FTILEWVT_					0	0	0			REV__ERBB2|p.M916I|1|0.07|ENSG00000141736|chr17:39725729-39725729|G/A|missense_variant	REV__ERBB2|p.M916I|1|0.07|ENSG00000141736|chr17:39725729-39725729|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2315368652344	2	504.773668	1007.53278	-0.8399	-0.00042396	-3.8999	-0.0019686	-4.7398	-0.0023925	504.7713334114968	44.446	0.93116	44.342	43.853	44.784	-0.10468					32	24	2	0	0	0	0.027866	1	4165	4165		7.6903	0	1	233520	+		17863	36008	12432	12458	20140	20140					0.029318397000452023
FTILFKKSF	9	Unmodified	_FTILFKKSF_					0	0	0		ENST00000254801.8_1_4:71521590-71521722:-|nuORF	ENST00000254801.8_1_4:71521590-71521722:-|nuORF	ENST00000254801.8_1_4:71521590-71521722:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.8352661132812	2	565.83406	1129.65357	-0.23858	-0.000135	2.4356	0.0013782	2.1971	0.0012432	565.8354865554585	21.973	0.90656	21.782	21.324	22.23	-0.19072					54	18	5	0	0	0	0.72875	1	715	715		44.117	8.9648	1	1803000			17864	11383	12433	12459	20141	20141					0.09392667413499112
FTILNPTN	8	Unmodified	_FTILNPTN_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2791442871094	2	460.247818	918.481082	0.0034831	1.6031E-06	3.8699	0.0017811	3.8734	0.0017827	460.2493486177027	67.653	1.392	67.415	66.998	68.39	-0.23814					55	33	2	0	0	0	0.027866	1	7772	7772		42.396	5.237	1	259120			17865	6595	12434	12460	20142	20142					0.018580960061512997
FTIPRRKK	8	Unmodified	_FTIPRRKK_					0	0	0		ENST00000522653.5_1_5:133481849-133482209:+|nuORF;ENST00000378560.8_2_5:133480506-133482209:+|nuORF	ENST00000522653.5_1_5:133481849-133482209:+|nuORF	ENST00000522653.5_1_5:133481849-133482209:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2872314453125	2	523.335093	1044.65563	-1.5932	-0.00083377	1.1046	0.0005781	-0.48853	-0.00025566	523.3355623294726	28.72	0.45749	28.72	28.49	28.947	0					13	10	2	0	0	0	0.027866	1	1674	1674		23.042	10.231	1	155160			17866	16031	12435	12461	20143	20143					0.13509140941982878
FTISLLRA	8	Unmodified	_FTISLLRA_					0	0	0		ENST00000482940.5_1_7:144378950-144433304:-|nuORF;ENST00000489798.5_1_7:144340663-144433304:-|nuORF	ENST00000482940.5_1_7:144378950-144433304:-|nuORF	ENST00000482940.5_1_7:144378950-144433304:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2580261230469	2	460.781828	919.549102	-1.0892	-0.00050188	1.1824	0.00054483	0.093217	4.2953E-05	460.78219874673647	37.573	0.61237	37.353	37.076	37.688	-0.2195					31	15	3	0	0	0	0.027866	1	3073	3073		12.207	5.0135	1	369180			17867	15270	12436	12462	20144	20144					0.08610965656805547
FTISLLRA	8	Unmodified	_FTISLLRA_					0	0	0		ENST00000482940.5_1_7:144378950-144433304:-|nuORF;ENST00000489798.5_1_7:144340663-144433304:-|nuORF	ENST00000482940.5_1_7:144378950-144433304:-|nuORF	ENST00000482940.5_1_7:144378950-144433304:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	460.781828	919.549102	0.025099	1.1565E-05	-0.036525	-1.683E-05	-0.011426	-5.2648E-06	460.7816007876356	37.543	0.57687	37.35	37.039	37.616	-0.193	-0.0038578	-0.0006946	NaN	7.1934	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351630			17868	15270	12436	12462							0.08610965656805547
FTISLLRA	8	Unmodified	_FTISLLRA_					0	0	0		ENST00000482940.5_1_7:144378950-144433304:-|nuORF;ENST00000489798.5_1_7:144340663-144433304:-|nuORF	ENST00000482940.5_1_7:144378950-144433304:-|nuORF	ENST00000482940.5_1_7:144378950-144433304:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	460.781828	919.549102	-0.80088	-0.00036903	0.97971	0.00045143	0.17883	8.2403E-05	460.7820265620091	37.568	0.61612	37.359	37.037	37.653	-0.2092	0.0046517	0.00024193	NaN	7.1934	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374940			17869	15270	12436	12462							0.08610965656805547
FTIVEGHVEP	10	Unmodified	_FTIVEGHVEP_					0	0	0			REV__ENST00000546992.5_1_12:51445876-51446122:+|nuORF	REV__ENST00000546992.5_1_12:51445876-51446122:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.27978515625	2	564.290214	1126.56587	-0.17347	-9.7885E-05	-0.033862	-1.9108E-05	-0.20733	-0.00011699	564.2903848359854	47.405	0.38534	47.211	46.997	47.382	-0.19387					12	9	2	0	0	0	0.03519	1	4608	4608		45.972	32.518	1	97801	+		17870	34854	12437	12463	20145	20145					0.007654217520894235
FTKADRVLL	9	Unmodified	_FTKADRVLL_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8169555664062	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.93097	1	10888	10888		30.318	4.7437	1	3781500			17871	5244	12438	12464	20146	20146					0.09498308748334239
FTKLESLSL	9	Unmodified	_FTKLESLSL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2640991210938	2	519.297507	1036.58046	-0.90607	-0.00047052	0.84784	0.00044028	-0.058232	-3.024E-05	519.2980544972584	57.477	0.26288	57.299	57.133	57.396	-0.17775					8	6	2	0	0	0	0.024477	1	6286	6286		9.7057	0	1	111720	+		17872	24045	12439	12465	20147	20147					0.06363493900244066
FTKLKETAEAF	11	Unmodified	_FTKLKETAEAF_					0	0	0		HSPA1L|p.L126F|1|0.13|ENSG00000204390|chr6:31811595-31811595|C/G|missense_variant	HSPA1L|p.L126F|1|0.13|ENSG00000204390|chr6:31811595-31811595|C/G|missense_variant	HSPA1L|p.L126F|1|0.13|ENSG00000204390|chr6:31811595-31811595|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2198181152344	3	428.899328	1283.67615	0.062546	2.6826E-05	-2.8021	-0.0012018	-2.7395	-0.001175	428.89792873407464	27.263	0.80081	27.106	26.844	27.645	-0.15664					41	18	4	0	0	0	0.024736	1	1504	1504		14.086	0	1	377900			17873	17750	12440	12466	20148	20148					0.04566222020457644
FTKNAQSTF	9	Unmodified	_FTKNAQSTF_					0	0	0			REV__ENSG00000165970|ENST00000525748|SLC6A5	REV__ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.261474609375	2	522.261456	1042.50836	-0.31631	-0.00016519	-0.45777	-0.00023908	-0.77408	-0.00040427	522.2611092395716	42.357	0.64498	42.234	41.998	42.643	-0.12299					33	15	3	0	0	0	0.6504	1	3805	3805		49.442	3.4896	1	1411000	+		17874	25951	12441	12467	20149	20149					-0.011194204534831442
FTKPPIGTW	9	Unmodified	_FTKPPIGTW_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475518-40477070:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.787353515625	2	523.78711	1045.55967	-0.42877	-0.00022458	0.29859	0.0001564	-0.13018	-6.8185E-05	523.7872572615738	61.022	1.2908	60.816	60.05	61.341	-0.20599					101	31	4	0	0	0	0.016542	7	6810	6777;6788;6799;6810;6822;6834;6847		154.12	51.107	1	17078000			17875	7843	12442	12468	20150;20151;20152;20153;20154;20155;20156	20153					0.038709483112370435
FTKPPIGTW	9	Unmodified	_FTKPPIGTW_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475518-40477070:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.787109375	2	523.78711	1045.55967	-0.86785	-0.00045457	0.62413	0.00032691	-0.24372	-0.00012766	523.7874364595885	60.876	1.3707	60.699	59.96	61.33	-0.1761					107	33	4	0	0	0	0.013924	7	6790	6769;6778;6790;6802;6814;6826;6840		167.23	76.859	1	18567000			17876	7843	12442	12468	20157;20158;20159;20160;20161;20162;20163	20159					0.038709483112370435
FTKPPIGTW	9	Unmodified	_FTKPPIGTW_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475518-40477070:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.787109375	2	523.78711	1045.55967	-0.70109	-0.00036722	0.38413	0.0002012	-0.31696	-0.00016602	523.7873044439084	61.061	1.3319	60.807	60.014	61.346	-0.25374					101	32	4	0	0	0	0.016542	6	6797	6775;6786;6797;6809;6821;6833		154.12	63.749	1	16887000			17877	7843	12442	12468	20164;20165;20166;20167;20168;20169	20166					0.038709483112370435
FTKRKFGLMKK	11	Unmodified	_FTKRKFGLMKK_					0	0	0		nc|ENSG00000213999|Q02080|MEF2B;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000116604|Q14814-3|MEF2D;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B	ENSG00000213999|ENST00000424583|MEF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.948486328125	3	461.947959	1382.82205	-0.00026872	-1.2413E-07	0.90587	0.00041846	0.9056	0.00041834	461.94827243331906	107.09	0.67344	106.97	106.68	107.35	-0.1238					80	22	4	0	0	0	1.0764	1	13330	13330		17.833	0.6664	1	1527500			17878	18714;10534	12443	12469	20170	20170					0.1459482605548601
FTKRKFGLMKK	11	Unmodified	_FTKRKFGLMKK_					0	0	0		nc|ENSG00000213999|Q02080|MEF2B;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000116604|Q14814-3|MEF2D;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;ENSG00000116604|ENST00000348159|MEF2D;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B	ENSG00000213999|ENST00000424583|MEF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.9483337402344	3	461.947959	1382.82205	0.61238	0.00028289	0.18098	8.3603E-05	0.79336	0.00036649	461.94794392048686	107.2	0.53325	107.04	106.81	107.34	-0.15772					68	20	4	0	0	0	1.0764	1	13320	13320		17.833	0	1	1520300			17879	18714;10534	12443	12469	20171	20171					0.1459482605548601
FTKSAIIFL	9	Unmodified	_FTKSAIIFL_					0	0	0			REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.8572998046875	2	520.312961	1038.61137	0.039843	2.0731E-05	-0.6481	-0.00033722	-0.60826	-0.00031648	520.3123767659769	75.879	0.18616	75.891	75.752	75.938	0.011635					6	4	2	0	0	0	0.024405	1	9260	9260		35.618	0	1	50183	+		17880	36078	12444	12470	20172	20172					0.09360692005134297
FTKSLHSI	8	Unmodified	_FTKSLHSI_					0	0	0		nc|ENSG00000083828|Q9NXT0-2|ZNF586	nc|ENSG00000083828|Q9NXT0-2|ZNF586	nc|ENSG00000083828|Q9NXT0-2|ZNF586	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8932189941406	2	466.763635	931.512717	-0.70345	-0.00032835	3.7577	0.001754	3.0543	0.0014256	466.76451221629003	30.306	0.38253	30.128	29.782	30.164	-0.17818					14	8	2	0	0	0	0.027866	1	1873	1873		11.511	0	1	56512			17881	18097	12445	12471	20173	20173					0.04422088760088627
FTKSVSQRASV	11	Unmodified	_FTKSVSQRASV_					0	0	0		nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.15509033203125	3	403.891055	1208.65134	1.0289	0.00041555	-0.09653	-3.8988E-05	0.93233	0.00037656	403.89094458336524	32.871	0.60748	32.679	32.377	32.985	-0.19261					20	12	2	0	0	0	0.024742	1	2315	2315		20.315	0	1	63843			17882	9850	12446	12472	20174	20174					0.05535586937753578
FTKVIEESA	9	Unmodified	_FTKVIEESA_					0	0	0			REV__PCDHB13|p.G290V|1|0.38|ENSG00000187372|chr5:141214992-141214992|G/T|missense_variant	REV__PCDHB13|p.G290V|1|0.38|ENSG00000187372|chr5:141214992-141214992|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2696533203125	2	512.27149	1022.52843	-0.23912	-0.0001225	-0.81194	-0.00041593	-1.0511	-0.00053843	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	0.96322	1	13636	13636		27.882	0.83493	1	6463600	+		17883	37358	12447	12473	20175	20175					0.018063304864767815
FTKVKPLL	8	Unmodified	_FTKVKPLL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.3107604980469	2	473.310221	944.605889	0.13133	6.2161E-05	-0.11975	-5.668E-05	0.011578	5.4802E-06	473.30997957657377	43.102	0.99813	42.989	42.735	43.733	-0.11253					58	26	4	0	0	0	0.5947	2	3926	3926;3937		76.774	27.333	1	2580600			17884	2185;2661;4670;4704	12448	12474	20176;20177	20176					0.1313701321331564
FTKVKPLL	8	Unmodified	_FTKVKPLL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.3106689453125	2	473.310221	944.605889	-0.33089	-0.00015661	0.22824	0.00010803	-0.10265	-4.8585E-05	473.31015124980837	43.278	0.95784	43.041	42.8	43.758	-0.23736					64	25	4	0	0	0	0.5947	2	3947	3936;3947		76.774	26.147	1	2593400			17885	2185;2661;4670;4704	12448	12474	20178;20179	20179					0.1313701321331564
FTKWRNGLLL	10	Unmodified	_FTKWRNGLLL_					0	0	0			REV__ENSG00000078725|ENST00000265922|BRINP1	REV__ENSG00000078725|ENST00000265922|BRINP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.8917236328125	3	416.580152	1246.71863	-0.48829	-0.00020341	-2.9531	-0.0012302	-3.4414	-0.0014336	416.5788600927476	37.939	0.51087	37.759	37.557	38.068	-0.17929					27	14	2	0	0	0	0.03519	1	3116	3116		14.694	1.7362	1	1440500	+		17886	20618	12449	12475	20180	20180					0.10513661939376107
FTLCACAKV	9	2 Carbamidomethyl (C)	_FTLC(Carbamidomethyl (C))AC(Carbamidomethyl (C))AKV_	FTLC(1)AC(1)AKV		FTLC(49)AC(49)AKV		0	2	0		ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000372070.7_1_1:46016755-46018203:+|nuORF	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	ENST00000496999.5_1_1:46016755-46032693:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.2608642578125	2	535.262087	1068.50962	-0.54094	-0.00028954	-1.9295	-0.0010328	-2.4705	-0.0013223	535.2611466120588	24.285	1.5811	24.11	23.786	25.367	-0.17484					100	36	5	0	0	0	0.6504	1	1018	1018		49.442	6.9671	1	23335000			17887	15578	12450	12476	20181	20181	204;205				-0.021892456805744587
FTLEVGKG	8	Unmodified	_FTLEVGKG_					0	0	0		ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.7491455078125	2	425.737086	849.459619	-0.0015046	-6.4057E-07	-2.8173	-0.0011994	-2.8188	-0.0012001	425.7357508091322	26.024	0.15406	25.853	25.771	25.925	-0.17078					6	4	2	0	0	0	0.027866	1	1282	1282		12.959	0	1	75168			17888	10548	12451	12477	20182	20182					0.028867109774409982
FTLEVGKG	8	Unmodified	_FTLEVGKG_					0	0	0		ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.737086	849.459619	-1.1006	-0.00046856	4.1009	0.0017459	3.0003	0.0012773	425.7371500071166	25.481	0.20612	25.481	25.363	25.569	0	-0.18625	0.00064776	NaN	19.36	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14984			17889	10548	12451	12477							0.028867109774409982
FTLFMNLL	8	Unmodified	_FTLFMNLL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1-CCDC47|1|fusion;nc|ENSG00000196712|P21359-4|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7696838378906	2	499.772614	997.530675	-0.14176	-7.0848E-05	-3.5029	-0.0017507	-3.6447	-0.0018215	499.77074925881664	65.32	1.2406	65.32	64.983	66.224	0					92	33	4	0	0	0	0.81662	1	7736	7736		57.811	6.4758	1	14555000			17890	9914	12452	12478	20183	20183					0.03181087690586537
FTLGGPFAAR	10	Unmodified	_FTLGGPFAAR_					0	0	0		ENST00000469444.6_1_2:172949561-172951418:+|nuORF	ENST00000469444.6_1_2:172949561-172951418:+|nuORF	ENST00000469444.6_1_2:172949561-172951418:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7696533203125	2	518.782359	1035.55016	-0.84684	-0.00043933	3.7173	0.0019285	2.8705	0.0014892	518.7841366920585	36.109	1.1515	36.147	35.15	36.301	0.03804					44	30	2	0	0	0	0.03519	1	2701	2701		31.53	0	1	251200			17891	14905	12453	12479	20184	20184					0.033811800256899005
FTLGPPHLA	9	Unmodified	_FTLGPPHLA_					0	0	0		ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.284912109375	2	476.766178	951.517802	-0.18095	-8.6273E-05	-4.1533	-0.0019801	-4.3342	-0.0020664	476.7640285539512	25.175	0.73549	25.005	24.387	25.122	-0.17078					21	16	2	0	0	0	0.024506	1	1126	1126		23.042	3.6825	1	165340			17892	17579	12454	12480	20185	20185					0.040103926226947806
FTLGPPHLA	9	Unmodified	_FTLGPPHLA_					0	0	0		ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.766178	951.517802	0.1446	6.8942E-05	-4.8835	-0.0023283	-4.7389	-0.0022593	476.7641565644757	25.084	0.54407	25.084	24.741	25.285	0	-0.0041048	-0.00061402	NaN	16.473	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85245			17893	17579	12454	12480							0.040103926226947806
FTLGPPHLA	9	Unmodified	_FTLGPPHLA_					0	0	0		ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.766178	951.517802	-0.60871	-0.00029021	-2.8548	-0.0013611	-3.4635	-0.0016513	476.7643697830417	25.135	0.32736	25.1	24.948	25.275	-0.034395	0.012453	0.0013204	NaN	16.473	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101340			17894	17579	12454	12480							0.040103926226947806
FTLGPPHLA	9	Unmodified	_FTLGPPHLA_					0	0	0		ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.766178	951.517802	0.41905	0.00019979	-4.2173	-0.0020107	-3.7982	-0.0018109	476.76392111391397	25.045	0.47586	25.125	24.779	25.254	0.08009	0.037488	2.1221E-05	NaN	16.473	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95246			17895	17579	12454	12480							0.040103926226947806
FTLGPPHLA	9	Unmodified	_FTLGPPHLA_					0	0	0		ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.766178	951.517802	0.72353	0.00034495	-4.9925	-0.0023803	-4.269	-0.0020353	476.76361960364096	25.202	0.37968	25.03	24.821	25.2	-0.17151	-0.057382	-0.00071799	NaN	16.473	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98725			17896	17579	12454	12480							0.040103926226947806
FTLHEALEI	9	Unmodified	_FTLHEALEI_					0	0	0			REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.78662109375	2	536.787307	1071.56006	-1.5636	-0.00083933	1.6737	0.00089844	0.11011	5.9107E-05	536.7880702548407	79.836	1.0452	79.664	79.109	80.154	-0.17225					38	24	2	0	0	0	0.59099	1	9894	9894		53.351	5.4358	1	340720	+		17897	36791	12455	12481	20186	20186					0.027143232404114315
FTLHRLTLAQL	11	Unmodified	_FTLHRLTLAQL_					0	0	0			REV__ENST00000566280.1_1_16:30064796-30066515:+|nuORF	REV__ENST00000566280.1_1_16:30064796-30066515:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.73687744140625	3	438.262712	1311.76631	0.76831	0.00033672	2.2886	0.001003	3.0569	0.0013397	438.2637397819842	59.655	0.58624	59.454	59.209	59.795	-0.20016					21	15	2	0	0	0	0.024809	1	6824	6824		12.433	1.3361	1	89852	+		17898	35297	12456	12482	20187	20187					0.12289316139572293
FTLKQKLVN	9	Unmodified	_FTLKQKLVN_					0	0	0		ENSG00000154760|ENST00000285013|SLFN13;nc|ENSG00000154760|Q68D06-2|SLFN13;ENSG00000172716|ENST00000685675|SLFN11	ENSG00000154760|ENST00000285013|SLFN13;ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8106079101562	2	545.834591	1089.65463	-0.58007	-0.00031662	-3.0436	-0.0016613	-3.6236	-0.0019779	545.8343809557313	70.077	0.25313	69.81	69.662	69.916	-0.26725					7	5	2	0	0	0	0.024541	1	8153	8153		10.866	0	1	34478			17899	8297;6433	12457	12483	20188	20188					0.11338881782421595
FTLKRESK	8	Unmodified	_FTLKRESK_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67270088-67280211:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7140197753906	2	504.795466	1007.57638	0.01485	7.4963E-06	0.27376	0.00013819	0.28861	0.00014569	504.7954236529299	32.431	0.64172	32.194	31.697	32.339	-0.23666					18	14	2	0	0	0	0.027866	1	2174	2174		6.7355	0.81444	1	107960			17900	6397	12458	12484	20189	20189					0.0728944919718515
FTLLAIIDL	9	Unmodified	_FTLLAIIDL_					0	0	0			REV__PIGQ|p.S389L|1|0.08|ENSG00000007541|chr16:578881-578881|C/T|missense_variant	REV__PIGQ|p.S389L|1|0.08|ENSG00000007541|chr16:578881-578881|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8123474121094	2	509.812793	1017.61103	-0.2043	-0.00010415	0.35087	0.00017888	0.14657	7.4725E-05	509.81285264911406	104.22	1.1642	104.22	103.9	105.06	0					77	32	4	0	0	0	0.62163	1	13421	13421		51.335	0	1	1517900	+		17901	37374	12459	12485	20190	20190					0.10293272285287003
FTLLELRN	8	Unmodified	_FTLLELRN_					0	0	0		sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7736511230469	2	503.290017	1004.56548	0.26372	0.00013273	-2.4608	-0.0012385	-2.1971	-0.0011058	503.28803134271556	59.209	0.48623	58.968	58.814	59.301	-0.24165					21	11	3	0	0	0	0.027866	1	6530	6530		24.203	13.337	1	536720			17902	37951	12460	12486	20191	20191					0.06338046822895649
FTLLFLTAV	9	Unmodified	_FTLLFLTAV_					0	0	0		ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.8336486816406	2	512.807511	1023.60047	-0.44317	-0.00022726	-1.1046	-0.00056643	-1.5477	-0.00079369	512.806502317851	73.081	0.33492	72.887	72.629	72.964	-0.19328					10	7	2	0	0	0	0.024535	1	8543	8543		12.207	0.69583	1	68016			17903	4928	12461	12487	20192	20192					0.0896128963083811
FTLLGVGTVT	10	Unmodified	_FTLLGVGTVT_					0	0	0		ENSG00000101276|ENST00000645534|SLC52A3;nc|ENSG00000101276|Q9NQ40-2|SLC52A3;SLC52A3|p.T96Mfs*53|1|0.16|ENSG00000101276|chr20:765488-765489|-/GAGACTGACA|frameshift_variant	ENSG00000101276|ENST00000645534|SLC52A3	ENSG00000101276|ENST00000645534|SLC52A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.77911376953125	2	504.292225	1006.5699	0.018814	9.4878E-06	1.2366	0.0006236	1.2554	0.00063309	504.2916246682103	71.576	0.4884	71.314	70.992	71.48	-0.26199					14	11	2	0	0	0	0.03519	1	8330	8330		25.574	0	1	50664			17904	2303	12462	12488	20193	20193					0.06687511245809219
FTLLLGYLVS	10	Unmodified	_FTLLLGYLVS_					0	0	0			REV__nc|ENSG00000262628|P47884|OR1D4	REV__nc|ENSG00000262628|P47884|OR1D4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7880249023438	2	563.33135	1124.64815	-0.80619	-0.00045415	-2.0739	-0.0011683	-2.8801	-0.0016225	563.3299228547005	30.093	0.42664	29.915	29.697	30.124	-0.17818					16	9	2	0	0	0	0.03519	1	1903	1903		20.947	0	1	78097	+		17905	29124	12463	12489	20194	20194					0.09080943831031618
FTLLTEAR	8	Unmodified	_FTLLTEAR_					0	0	0		nc|ENSG00000196547|P49641-1|MAN2A2;ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2	REV__SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|37|1|anti-sense	REV__SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|37|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.75811767578125	2	475.768917	949.523281	0.56679	0.00026966	-0.20725	-9.8604E-05	0.35954	0.00017106	475.7684707632991	37.009	0.5879	36.8	36.565	37.153	-0.2092					31	14	3	0	0	0	0.027866	1	2927	2927		16.473	4.9621	1	478530			17906	37618	12464	12490	20195	20195					0.046500714145167876
FTLNAAAMKLY	11	Unmodified	_FTLNAAAMKLY_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.7619323730469	3	414.889886	1241.64783	0.807	0.00033481	3.3984	0.0014099	4.2054	0.0017448	414.89205614277864	87.812	0.27127	87.776	87.573	87.844	-0.035355					8	6	2	0	0	0	0.024747	1	10991	10991		47.228	16.16	1	87864	+		17907	27914	12465	12491	20196	20196					0.03667200839549878
FTLNKKKK	8	Unmodified	_FTLNKKKK_					0	0	0			REV__ENST00000528205.1_1_11:57472131-57479651:-|nuORF	REV__ENST00000528205.1_1_11:57472131-57479651:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2326354980469	2	503.824027	1005.6335	-0.84452	-0.00042549	0.54315	0.00027365	-0.30137	-0.00015184	503.82432366177187	44.803	0.54571	44.704	44.431	44.977	-0.099445					17	13	2	0	0	0	0.027866	1	4177	4177		27.882	3.6795	1	78663	+		17908	34490	12466	12492	20197	20197					0.13090916473561265
FTLNSGQYWL	10	Unmodified	_FTLNSGQYWL_					0	0	0		ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.8913879394531	3	410.204751	1227.59242	-1.23	-0.00050453	1.2041	0.00049394	-0.025809	-1.0587E-05	410.20519010290747	28.847	0.77352	28.602	28.281	29.055	-0.24524					52	17	4	0	0	0	0.03519	1	1675	1675		40.058	25.815	1	437520			17909	8461	12467	12493	20198	20198					-0.012268893565760663
FTLNSQVLTGQ	11	Unmodified	_FTLNSQVLTGQ_					0	0	0		ENST00000417851.2_1_3:50255182-50255305:+|nuORF	ENST00000417851.2_1_3:50255182-50255305:+|nuORF	ENST00000417851.2_1_3:50255182-50255305:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.55487060546875	3	403.215427	1206.62445	-0.75132	-0.00030295	-1.0273	-0.00041421	-1.7786	-0.00071715	403.21478275801036	21.975	0.72278	21.773	21.517	22.24	-0.20199					28	14	3	0	0	0	0.024734	1	766	766		21.78	0	1	101260			17910	13922	12468	12494	20199	20199					0.029404783265590595
FTLPEFSLASV	11	Unmodified	_FTLPEFSLASV_					0	0	0		ENST00000560451.5_1_15:91463647-91463971:+|nuORF	ENST00000560451.5_1_15:91463647-91463971:+|nuORF	ENST00000560451.5_1_15:91463647-91463971:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.2184143066406	3	404.216657	1209.62814	1.0514	0.00042499	2.85	0.001152	3.9014	0.001577	404.21777515581726	57.25	1.112	57.048	56.747	57.859	-0.20208					101	29	5	0	0	0	1.0022	1	6262	6262		36.318	2.396	1	15287000			17911	16801	12469	12495	20200	20200					0.03171148100409482
FTLPLRLSS	9	Unmodified	_FTLPLRLSS_					0	0	0		ENST00000470594.5_1_X:51809762-51812242:-|nuORF	ENST00000470594.5_1_X:51809762-51812242:-|nuORF	ENST00000470594.5_1_X:51809762-51812242:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.3131713867188	2	517.305667	1032.59678	-0.069557	-3.5982E-05	0.37435	0.00019365	0.30479	0.00015767	517.3059494852048	97.842	0.40256	97.677	97.397	97.799	-0.16521					14	8	2	0	0	0	0.024523	1	12091	12091		10.265	0	1	67019			17912	14932	12470	12496	20201	20201					0.08178619856994374
FTLPPPGVR	9	Unmodified	_FTLPPPGVR_					0	0	0		ENST00000513447.1_1_5:54566383-54570502:-|nuORF;ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENST00000513447.1_1_5:54566383-54570502:-|nuORF;ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2422790527344	2	492.287277	982.560001	-0.097973	-4.8231E-05	3.8451	0.0018929	3.7472	0.0018447	492.2889833209798	17.645	0.24895	17.439	17.265	17.514	-0.20669					6	4	2	0	0	0	0.024523	1	179	179		29.15	0	1	19105			17913	1359;15868	12471	12497	20202	20202					0.06802368031094375
FTLQETDR	8	Unmodified	_FTLQETDR_					0	0	0		ENST00000368474.8_1_1:154573570-154573651:-|nuORF	ENST00000368474.8_1_1:154573570-154573651:-|nuORF	ENST00000368474.8_1_1:154573570-154573651:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.71380615234375	2	505.251089	1008.48762	-1.3202	-0.00066703	1.527	0.0007715	0.20677	0.00010447	505.25174837707783	28.947	0.64927	28.701	28.406	29.055	-0.24524					28	14	2	0	0	0	0.027866	1	1754	1754		32.812	0	1	186360			17914	12896	12472	12498	20203	20203					-0.016280108331329757
FTLQQTRW	8	Unmodified	_FTLQQTRW_					0	0	0		ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.800048828125	2	540.285266	1078.55598	0.35629	0.0001925	-3.5095	-0.0018961	-3.1532	-0.0017036	540.282820824545	67.801	1.1947	67.546	67.194	68.389	-0.25516					47	28	5	0	0	0	0.027866	1	7888	7888		47.916	0.25827	1	427200			17915	1496	12473	12499	20204	20204					0.01984278537361206
FTLRLESKL	9	Unmodified	_FTLRLESKL_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.829833984375	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.74711	1	10567	10567		42.864	6.4175	1	1748900	+		17916	24738	12474	12500	20205	20205					0.10094577919812764
FTLTKKEL	8	Unmodified	_FTLTKKEL_					0	0	0		nc|ENSG00000135083|Q8IV13|CCNJL;ENSG00000135083|ENST00000257536|CCNJL;ENST00000377503.6_1_5:159681329-159707642:-|nuORF	nc|ENSG00000135083|Q8IV13|CCNJL	nc|ENSG00000135083|Q8IV13|CCNJL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.25836181640625	2	490.294768	978.574983	-0.71921	-0.00035262	3.0377	0.0014894	2.3185	0.0011367	490.29559189568954	105.51	0.45786	105.38	105.19	105.65	-0.13099					19	13	2	0	0	0	0.027866	1	13125	13125		23.042	2.5607	1	104820			17917	4857	12475	12501	20206	20206					0.08483815108411363
FTLTMMSVD	9	Unmodified	_FTLTMMSVD_					0	0	0		nc|ENSG00000082556|P41145-2|OPRK1;ENSG00000082556|ENST00000265572|OPRK1	nc|ENSG00000082556|P41145-2|OPRK1	nc|ENSG00000082556|P41145-2|OPRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.784423828125	2	522.740654	1043.46675	-0.46881	-0.00024507	1.766	0.00092316	1.2972	0.00067809	522.7406614683131	69.704	0.49015	69.704	69.464	69.954	0					21	11	2	0	0	0	0.024405	1	8381	8381		35.618	13.658	1	133420			17918	1737	12476	12502	20207	20207					-0.053240605286646314
FTLTSPVGDG	10	Unmodified	_FTLTSPVGDG_					0	0	0		ENST00000498600.2_1_1:170508481-170511691:+|nuORF;ENST00000465717.1_1_1:170508481-170508748:+|nuORF;nc|ENSG00000120370|Q5T7V8-2|GORAB;ENSG00000120370|ENST00000367763|GORAB	ENST00000498600.2_1_1:170508481-170511691:+|nuORF;ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2513427734375	2	497.248015	992.481476	0.072525	3.6063E-05	4.0816	0.0020296	4.1541	0.0020656	497.2501409005542	59.359	2.9273	59.445	58.254	61.182	0.085682					149	78	3	0	0	0	0.03519	1	6971	6971		25.574	4.6271	1	1533400			17919	15626;3812	12477	12503	20208	20208					-0.015065290646589347
FTLVFARSH	9	Unmodified	_FTLVFARSH_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.326904296875	2	539.295633	1076.57671	-0.21961	-0.00011844	3.2563	0.0017561	3.0366	0.0016376	539.2957294121038	99.282	0.84068	99.278	98.638	99.479	-0.0038834					36	18	3	0	0	0	0.024477	1	12636	12636		35.618	13.658	1	67126	+		17920	23162	12478	12504	20209	20209					0.04148868917036452
FTLVTSLGLS	10	Unmodified	_FTLVTSLGLS_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.29248046875	2	519.297507	1036.58046	0.15219	7.903E-05	0.18023	9.3595E-05	0.33242	0.00017262	519.2971849880961	73.134	0.60992	72.863	72.557	73.167	-0.27126					18	14	2	0	0	0	0.03519	1	8906	8906		19.997	0	1	116030			17921	10840	12479	12505	20210	20210					0.06363493900244066
FTMITVPEQ	9	Unmodified	_FTMITVPEQ_					0	0	0			REV__CON__Q6T181	REV__CON__Q6T181	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7925415039062	2	533.267893	1064.52123	-1.0815	-0.00057672	-1.0799	-0.00057587	-2.1614	-0.0011526	533.2668706137042	44.803	0.20268	44.592	44.474	44.677	-0.21109					5	4	2	0	0	0	0.024397	1	4201	4201		39.253	3.6345	1	80321	+	+	17922	19598	12480	12506	20211	20211					-0.00844725385604761
FTMKWRLN	8	Unmodified	_FTMKWRLN_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2954711914062	2	548.292037	1094.56952	1.3792	0.00075621	4.3471	0.0023835	5.7263	0.0031397	548.2945708902448	19.755	1.8583	19.821	19.538	21.396	0.066195					101	37	5	0	0	0	1.043	1	481	481		30.504	0.18592	1	5896600	+		17923	20134	12481	12507	20212	20212					0.026018130449529053
FTMLGTALD	9	Unmodified	_FTMLGTALD_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2734680175781	2	484.741511	967.468469	0.61178	0.00029656	-0.72432	-0.00035111	-0.11253	-5.4549E-05	484.7411642246347	71.041	1.3123	71.041	70.483	71.795	0					58	32	3	0	0	0	0.024487	1	8664	8664		6.7355	0	1	343990	+		17924	28147	12482	12508	20213	20213					-0.01656683448413787
FTMLGTALD	9	Unmodified	_FTMLGTALD_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.741511	967.468469	0.80151	0.00038852	-1.4595	-0.00070747	-0.65797	-0.00031895	484.7410916570504	71.226	1.625	71.02	70.615	72.24	-0.20614	-0.019601	-0.0011128	NaN	6.7355	49	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166720	+		17925	28147	12482	12508							-0.01656683448413787
FTMLKVSTI	9	Unmodified	_FTMLKVSTI_					0	0	0			REV__ENST00000395686.7_1_14:53133183-53138380:-|nuORF	REV__ENST00000395686.7_1_14:53133183-53138380:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.8573608398438	2	520.296453	1038.57835	-1.3081	-0.00068058	1.2939	0.00067319	-0.014194	-7.385E-06	520.29666223064	75.737	0.76406	75.737	75.307	76.071	0					48	20	4	0	0	0	0.023274	1	9337	9337		98.629	29.843	1	378440	+		17926	31709	12483	12509	20214	20214					0.0606074189076935
FTNFDLLS	8	Unmodified	_FTNFDLLS_					0	0	0		ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7527770996094	2	478.739825	955.465098	-0.27216	-0.00013029	-4.3739	-0.002094	-4.6461	-0.0022243	478.73816688836547	32.241	0.2652	32.304	32.2	32.465	0.062885					10	6	3	0	0	0	0.027866	1	2170	2170		35.618	0	1	79487			17927	9398	12484	12510	20215	20215					-0.01441610230756396
FTNLVWSTV	9	Unmodified	_FTNLVWSTV_					0	0	0			REV__ENST00000513504.1_1_4:152592328-152612815:-|nuORF	REV__ENST00000513504.1_1_4:152592328-152612815:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2734375	2	533.782025	1065.5495	-1.1528	-0.00061537	1.1759	0.00062768	0.023072	1.2316E-05	534.284390020853	83.643	0.60265	83.669	83.342	83.945	0.026558					20	13	2	0	0	0	0.024506	1	10351	10351		30.504	4.9296	1	288520	+		17928	20243	12485	12511	20216	20216					0.019343405859899576
FTNLVWSTV	9	Unmodified	_FTNLVWSTV_					0	0	0			REV__ENST00000513504.1_1_4:152592328-152612815:-|nuORF	REV__ENST00000513504.1_1_4:152592328-152612815:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.782025	1065.5495	-1.1475	-0.00061253	1.7287	0.00092276	0.58119	0.00031023	534.2849077842807	83.794	0.47281	83.704	83.427	83.9	-0.090454	-0.018213	0.00015782	NaN	32.812	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248720	+		17929	20243	12485	12511							0.019343405859899576
FTPCSSAL	8	Unmodified	_FTPCSSAL_					0	0	0			REV__ENSG00000187862|ENST00000368236|TTC24	REV__ENSG00000187862|ENST00000368236|TTC24	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.19439697265625	2	413.194196	824.37384	0.62283	0.00025735	-1.9501	-0.00080576	-1.3273	-0.00054841	413.19330068265566	83.142	2.366	82.928	81.834	84.2	-0.21374					97	54	3	0	0	0	1.0572	1	10043	10043		28.254	6.5519	1	1091100	+		17930	27987	12486	12512	20217	20217					-0.0453719719973833
FTPDLELIL	9	Unmodified	_FTPDLELIL_					0	0	0			REV__nc|ENSG00000136205|Q68CZ2-2|TNS3	REV__nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8035888671875	2	530.799883	1059.58521	0.067051	3.5591E-05	3.0965	0.0016436	3.1636	0.0016792	530.801319543455	101.17	0.88271	101	100.77	101.65	-0.17178					47	19	3	0	0	0	0.40179	1	12525	12525		65.803	15.779	1	1205000	+		17931	23637	12487	12513	20218	20218					0.0578037804300493
FTPEDRLGK	9	Unmodified	_FTPEDRLGK_					0	0	0		nc|ENSG00000081842|Q9UN73-2|PCDHA6;nc|ENSG00000081842|Q9UN73-3|PCDHA6;ENSG00000081842|ENST00000529310|PCDHA6	nc|ENSG00000081842|Q9UN73-2|PCDHA6	nc|ENSG00000081842|Q9UN73-2|PCDHA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8091430664062	2	531.782556	1061.55056	-0.9858	-0.00052423	3.9193	0.0020842	2.9335	0.00156	531.7845010943441	47.756	0.5763	47.815	47.423	47.999	0.059097					22	12	2	0	0	0	0.024397	1	4745	4745		39.253	6.4404	1	998940			17932	1717	12488	12514	20219	20219					0.022245549549097632
FTPFSPLQT	9	Unmodified	_FTPFSPLQT_					0	0	0			REV__ENST00000564546.5_1_16:30076568-30077015:+|nuORF	REV__ENST00000564546.5_1_16:30076568-30077015:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2691040039062	2	519.26875	1036.52295	-0.1834	-9.5232E-05	3.8017	0.0019741	3.6183	0.0018789	519.2707697872314	75.277	0.55769	75.288	75.051	75.609	0.010368					24	14	2	0	0	0	0.023635	1	9133	9133		87.754	23.547	1	344320	+		17933	35252	12489	12515	20220	20220					0.006146516946500924
FTPIPSFTL	9	Unmodified	_FTPIPSFTL_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7691345214844	2	511.781493	1021.54843	-0.43141	-0.00022079	-0.29349	-0.0001502	-0.7249	-0.00037099	511.7816955705453	85.362	1.98	85.304	84.605	86.585	-0.057617					86	46	4	0	0	0	0.024205	1	10799	10799		63.306	15.391	1	1548600			17934	3665	12490	12516	20221	20221					0.03852126217100249
FTPLILGLN	9	Unmodified	_FTPLILGLN_					0	0	0		ENSG00000184954|ENST00000327335|OR6C70	ENSG00000184954|ENST00000327335|OR6C70	ENSG00000184954|ENST00000327335|OR6C70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7762451171875	2	494.29731	986.580068	-0.024158	-1.1941E-05	-3.9846	-0.0019696	-4.0087	-0.0019815	494.29515110977894	60.311	0.85691	60.311	60.027	60.884	0					50	22	4	0	0	0	0.024436	1	6895	6895		10.866	0	1	1804800			17935	9386	12491	12517	20222	20222					0.08624118971044936
FTPLKPTFLIS	11	Unmodified	_FTPLKPTFLIS_					0	0	0		nc|ENSG00000079335|Q9UNH5-4|CDC14A	nc|ENSG00000079335|Q9UNH5-4|CDC14A	nc|ENSG00000079335|Q9UNH5-4|CDC14A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	421.91656494140625	3	421.91643	1262.72746	2.812	0.0011864	-2.1206	-0.00089472	0.69142	0.00029172	421.915427910184	19.396	0.87496	19.462	19.143	20.018	0.066195					45	17	4	0	0	0	1.0371	1	386	386		28.577	6.7963	1	315030			17936	18091	12492	12518	20223	20223					0.10660590785187196
FTPLWSLL	8	Unmodified	_FTPLWSLL_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.784912109375	2	488.778754	975.542954	-0.43816	-0.00021416	-2.9929	-0.0014629	-3.4311	-0.001677	488.77688779065556	81.326	0.57382	81.326	81.097	81.671	0					24	13	3	0	0	0	0.027866	1	10108	10108		19.36	11.129	1	666620	+		17937	21198	12493	12519	20224	20224					0.054204474252856016
FTPLWSLL	8	Unmodified	_FTPLWSLL_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	488.778754	975.542954	-0.77956	-0.00038103	-2.4518	-0.0011984	-3.2314	-0.0015794	488.776996721523	81.444	0.61038	81.314	81.094	81.705	-0.13075	-0.0032292	0.00039878	NaN	25.45	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620950	+		17938	21198	12493	12519							0.054204474252856016
FTPLWSLL	8	Unmodified	_FTPLWSLL_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.778754	975.542954	-1.0211	-0.00049912	-2.9552	-0.0014444	-3.9763	-0.0019436	488.77715410146794	81.287	0.65068	81.311	81.007	81.658	0.023903	-0.005603	-9.3317E-05	NaN	25.45	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662330	+		17939	21198	12493	12519							0.054204474252856016
FTPPRNAAL	9	Unmodified	_FTPPRNAAL_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-5|SYT14	REV__nc|ENSG00000143469|Q8NB59-5|SYT14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7765197753906	2	493.774534	985.534515	-0.23091	-0.00011402	3.569	0.0017623	3.3381	0.0016483	493.77609883396053	32.529	0.68351	32.371	32.163	32.847	-0.15772					31	16	2	0	0	0	0.13494	1	2233	2233		102.77	9.5779	1	1854500	+		17940	36733	12494	12520	20225	20225					0.041168935086489
FTPPRNAAL	9	Unmodified	_FTPPRNAAL_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-5|SYT14	REV__nc|ENSG00000143469|Q8NB59-5|SYT14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.774534	985.534515	-0.43332	-0.00021396	3.8477	0.0018999	3.4144	0.0016859	493.7763359280852	32.595	0.78706	32.358	32.042	32.829	-0.23666	-0.013194	0.00014604	NaN	102.77	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1682100	+		17941	36733	12494	12520							0.041168935086489
FTPPRNAAL	9	Unmodified	_FTPPRNAAL_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-5|SYT14	REV__nc|ENSG00000143469|Q8NB59-5|SYT14	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	493.774534	985.534515	0.4612	0.00022773	3.0938	0.0015276	3.555	0.0017554	493.7758275822837	32.577	0.79189	32.385	32.029	32.821	-0.19261	0.01354	-0.00059847	NaN	102.77	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1614400	+		17942	36733	12494	12520							0.041168935086489
FTPPRNAAL	9	Unmodified	_FTPPRNAAL_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-5|SYT14	REV__nc|ENSG00000143469|Q8NB59-5|SYT14	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	493.774534	985.534515	-0.23091	-0.00011402	3.569	0.0017623	3.3381	0.0016483	493.77609883396053	32.529	0.68351	32.371	32.163	32.847	-0.15772	-0.0003468	-0.00012919	NaN	102.77	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1854500	+		17943	36733	12494	12520							0.041168935086489
FTPRPLPLVDK	11	Unmodified	_FTPRPLPLVDK_					0	0	0			REV__nc|ENSG00000037897|Q9UBP6-2|METTL1	REV__nc|ENSG00000037897|Q9UBP6-2|METTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8825073242188	2	641.87953	1281.74451	0.34309	0.00022022	4.1213	0.0026454	4.4644	0.0028656	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.0429	1	11677	11677		27.047	0.3544	1	1209200	+		17944	36446	12495	12521	20226	20226					0.11490511390957181
FTPRPLPLVDK	11	Unmodified	_FTPRPLPLVDK_					0	0	0			REV__nc|ENSG00000037897|Q9UBP6-2|METTL1	REV__nc|ENSG00000037897|Q9UBP6-2|METTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8832397460938	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0465	1	12054	12054		26.063	0.48933	1	3421300	+		17945	36446	12495	12521	20227	20227					0.11490511390957181
FTPYDYSQSDF	11	Unmodified	_FTPYDYSQSDF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10;ENST00000474216.5_1_1:11126777-11137033:-|nuORF	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7753601074219	3	457.190947	1368.55101	0.97496	0.00044574	4.3703	0.0019981	5.3453	0.0024438	457.19283870427773	20.583	1.3788	20.652	20.069	21.448	0.068901					40	27	2	0	0	0	0.02484	1	559	559		12.433	2.7867	1	28766			17946	8200	12496	12522	20228	20228					-0.11852114906582756
FTQESLHWREN	11	Unmodified	_FTQESLHWREN_					0	0	0		ENST00000595607.5_1_19:48789714-48789792:+|nuORF	ENST00000595607.5_1_19:48789714-48789792:+|nuORF	ENST00000595607.5_1_19:48789714-48789792:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.79058837890625	3	482.896869	1445.66878	1.9531	0.00094316	-0.074946	-3.6191E-05	1.8782	0.00090697	483.23136628504415	36.656	0.24471	36.452	36.245	36.49	-0.20433					7	5	2	0	0	0	0.024789	1	2865	2865		33.039	20.082	1	33150			17947	17421	12497	12523	20229	20229					-0.036231175272632754
FTQFLLEI	8	Unmodified	_FTQFLLEI_					0	0	0		ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13	ENSG00000004864|ENST00000265631|SLC25A13	ENSG00000004864|ENST00000265631|SLC25A13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3548278808594	2	505.781493	1009.54843	0.075908	3.8393E-05	2.5675	0.0012986	2.6434	0.001337	505.78303960994117	90.555	0.82792	90.417	89.917	90.745	-0.13824					29	19	2	0	0	0	0.027866	1	11049	11049		35.618	3.6634	1	66242			17948	750	12498	12524	20230	20230					0.04404126217082194
FTQGITRR	8	Unmodified	_FTQGITRR_					0	0	0			REV__ENSG00000173285|ENST00000641535|OR10K1	REV__ENSG00000173285|ENST00000641535|OR10K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.74285888671875	2	489.777608	977.540663	-0.14434	-7.0696E-05	-0.12365	-6.0563E-05	-0.268	-0.00013126	489.7773342772142	31.986	0.42236	31.828	31.569	31.991	-0.15772					12	9	2	0	0	0	0.027866	1	2121	2121		16.473	0	1	56327	+		17949	26763	12499	12525	20231	20231					0.050994117401728545
FTQHAVNYMK	10	Unmodified	_FTQHAVNYMK_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.2690124511719	3	413.537736	1237.59138	0.17573	7.2671E-05	-2.5846	-0.0010688	-2.4089	-0.00099615	413.5366737498402	27.793	1.0836	27.793	27.323	28.406	0					50	27	3	0	0	0	0.03519	1	1643	1643		10.587	1.375	1	135590			17950	7347	12500	12526	20232	20232					-0.017914269971470276
FTQKEQLQL	9	Unmodified	_FTQKEQLQL_					0	0	0			REV__ENSG00000167740|ENST00000301391|CYB5D2	REV__ENSG00000167740|ENST00000301391|CYB5D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.8102416992188	2	567.811313	1133.60807	0.3344	0.00018988	-1.4225	-0.00080772	-1.0881	-0.00061784	567.8103965361772	69.529	1.6331	69.236	68.405	70.038	-0.29292					131	41	6	0	0	0	0.23085	1	8351	8351		84.916	7.5979	1	12873000	+		17951	26189	12501	12527	20233	20233					0.04661397160475644
FTQKHETN	8	Unmodified	_FTQKHETN_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7667541503906	2	502.743431	1003.47231	0.33895	0.0001704	-3.9166	-0.001969	-3.5777	-0.0017986	503.24163391295525	58.415	0.11543	58.415	58.342	58.457	0					4	2	2	0	0	0	0.027866	1	6619	6619		6.3127	0	1	52167	+		17952	27183	12502	12528	20234	20234					-0.02928877630347415
FTQKINSTW	9	Unmodified	_FTQKINSTW_					0	0	0		ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7898559570312	2	562.790381	1123.56621	-0.96902	-0.00054535	0.26177	0.00014732	-0.70725	-0.00039803	562.7904575376397	48.721	0.78076	48.62	48.288	49.068	-0.1008					55	20	4	0	0	0	0.015077	4	4867	4844;4854;4867;4880		218.73	99.987	1	3549800			17953	16684	12503	12529	20235;20236;20237;20238	20237					0.009368414719347129
FTQKINSTW	9	Unmodified	_FTQKINSTW_					0	0	0		ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.7899780273438	2	562.790381	1123.56621	-0.4771	-0.00026851	-0.11003	-6.1921E-05	-0.58713	-0.00033043	562.7902177905703	49.046	0.69584	48.766	48.465	49.161	-0.27977					52	18	4	0	0	0	0.012922	3	4906	4883;4895;4906		209.21	102.2	1	4440600			17954	16684	12503	12529	20239;20240;20241	20241					0.009368414719347129
FTQKINSTW	9	Unmodified	_FTQKINSTW_					0	0	0		ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	ENST00000555408.5_1_12:56361645-56362592:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.7901000976562	2	562.790381	1123.56621	-0.4476	-0.00025191	-0.25413	-0.00014302	-0.70173	-0.00039493	562.7901649377688	48.871	0.7376	48.689	48.339	49.076	-0.18206					53	19	4	0	0	0	0.01388	3	4860	4860;4871;4884		195.57	107.4	1	3928600			17955	16684	12503	12529	20242;20243;20244	20242					0.009368414719347129
FTQNVHRLVN	10	Unmodified	_FTQNVHRLVN_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.8913879394531	3	409.891278	1226.652	-0.87562	-0.00035891	0.14999	6.148E-05	-0.72563	-0.00029743	409.8915383013813	28.471	1.2467	28.225	27.677	28.924	-0.24524					65	29	3	0	0	0	1.0074	1	1663	1663		45.022	9.844	1	2573700			17956	7910	12504	12530	20245	20245					0.0477442637745753
FTQRPNLI	8	Unmodified	_FTQRPNLI_					0	0	0		ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2975769042969	2	494.782359	987.550165	-0.64544	-0.00031935	-2.4655	-0.0012199	-3.111	-0.0015393	494.78101831480717	85.329	1.3693	85.355	84.662	86.031	0.025536					70	32	3	0	0	0	0.027866	1	10536	10536		55.504	16.698	1	780510			17957	1759	12505	12531	20246	20246					0.05589180025708629
FTQRSKLI	8	Unmodified	_FTQRSKLI_					0	0	0		ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	ENSG00000198131|ENST00000687789|ZNF544	MSMS	OPSCC_40_ClassI_Rep-1	4	496.7944641113281	2	496.798009	991.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.829	1	38.664	38.164	39.164	-0.16458								0	0	0	0.49603	1	3241	3241		55.504	2.1528	1				17958	10098	12506	12532	20247	20247					0.08533753059816718
FTQTSESIF	9	Unmodified	_FTQTSESIF_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3055419921875	2	530.253297	1058.49204	-0.2221	-0.00011777	-0.67871	-0.00035989	-0.90081	-0.00047766	530.2524312036805	64.085	0.55207	63.826	63.752	64.304	-0.25824					18	13	2	0	0	0	0.024292	1	7311	7311		49.442	18.938	1	113760	+		17959	19076	12507	12533	20248	20248					-0.034865464102495025
FTRESERKR	9	Unmodified	_FTRESERKR_					0	0	0			REV__ENSG00000132424|ENST00000369239|PNISR	REV__ENSG00000132424|ENST00000369239|PNISR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5426330566406	3	403.554666	1207.64217	0.7039	0.00028406	-0.69121	-0.00027894	0.012689	5.1206E-06	403.5541046327273	19.757	0.77563	19.596	19.233	20.009	-0.16079					29	15	3	0	0	0	0.024515	1	498	498		28.081	10.248	1	61043	+		17960	23276	12508	12534	20249	20249					0.04665238372058411
FTRESERKR	9	Unmodified	_FTRESERKR_					0	0	0			REV__ENSG00000132424|ENST00000369239|PNISR	REV__ENSG00000132424|ENST00000369239|PNISR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	403.554666	1207.64217	1.8104	0.0007306	1.1635	0.00046955	2.974	0.0012002	403.89010252656175	19.499	0.66483	19.499	19.07	19.735	0	-0.12057	0.0026821	NaN	28.081	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45631	+		17961	23276	12508	12534							0.04665238372058411
FTRESERKR	9	Unmodified	_FTRESERKR_					0	0	0			REV__ENSG00000132424|ENST00000369239|PNISR	REV__ENSG00000132424|ENST00000369239|PNISR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	403.554666	1207.64217	4.4234	0.0017851	-2.4563	-0.00099125	1.9671	0.00079383	403.88874710375933	19.661	0.87434	19.728	19.291	20.165	0.066195	0.10854	-0.0017003	NaN	28.081	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34217	+		17962	23276	12508	12534							0.04665238372058411
FTRFADLF	8	Unmodified	_FTRFADLF_					0	0	0			REV__ENSG00000213160|ENST00000392647|KLHL23	REV__ENSG00000213160|ENST00000392647|KLHL23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7635498046875	2	508.763635	1015.51272	-0.1103	-5.6117E-05	3.4096	0.0017347	3.2993	0.0016786	508.76519286523586	48.196	2.9272	48.01	46.93	49.858	-0.18684					150	78	3	0	0	0	0.027866	1	4905	4905		37.159	15.457	1	676540	+		17963	28729	12509	12535	20250	20250					0.0055808876007859
FTRFCVECKF	10	Unmodified	_FTRFCVECKF_					0	0	0			REV__nc|ENSG00000125812|Q9H116-4|GZF1	REV__nc|ENSG00000125812|Q9H116-4|GZF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.74041748046875	3	427.203588	1278.58893	0.67964	0.00029034	-2.9575	-0.0012635	-2.2779	-0.00097313	427.20219676658616	22.304	0.6956	22.115	21.863	22.559	-0.18894					28	14	3	0	0	0	0.03519	1	785	785		38.754	0	1	130330	+		17964	22845	12510	12536	20251	20251					-0.039215987264697105
FTRILFSI	8	Unmodified	_FTRILFSI_					0	0	0			REV__ENST00000392542.6_1_12:118456905-118456935:+|nuORF	REV__ENST00000392542.6_1_12:118456905-118456935:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.8094482421875	2	498.797478	995.580402	0.18135	9.0455E-05	-4.016	-0.0020032	-3.8346	-0.0019127	498.79530870317234	23.346	0.48463	23.144	22.873	23.358	-0.20193					20	10	3	0	0	0	0.027866	1	920	920		35.618	3.6634	1	154560	+		17965	31610	12511	12537	20252	20252					0.08243538690885543
FTRLERKR	8	Unmodified	_FTRLERKR_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.33203125	2	553.333082	1104.65161	-0.10787	-5.9689E-05	-1.0344	-0.00057236	-1.1423	-0.00063205	553.3323260230788	95.491	1.2442	95.354	94.938	96.182	-0.13689					88	28	5	0	0	0	1.043	1	11761	11761		30.504	4.9296	1	4161900	+		17966	25660	12512	12538	20253	20253					0.10347051448275124
FTRLERKRRQR	11	Unmodified	_FTRLERKRRQR_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2958984375	3	515.97808	1544.91241	-1.1357	-0.000586	0.12423	6.4099E-05	-1.0115	-0.0005219	515.978519317893	106.83	0.34085	106.69	106.51	106.85	-0.1346					21	15	2	0	0	0	0.024865	1	13261	13261		12.433	2.3289	1	76625	+		17967	25660	12513	12539	20254	20254					0.1617501142814035
FTRRAGPTP	9	Unmodified	_FTRRAGPTP_					0	0	0		ENST00000580027.1_1_17:73559414-73559615:+|nuORF	ENST00000580027.1_1_17:73559414-73559615:+|nuORF	ENST00000580027.1_1_17:73559414-73559615:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	501.777608	1001.54066	0.021193	1.0634E-05	3.2797	0.0016457	3.3009	0.0016563	501.778968188644	97.862	0.77045	97.862	97.504	98.275	0					34	17	3	0	0	0	0.024381	1	12545	12545		21.96	7.095	1	124320			17968	17144	12514	12540	20255	20255					0.03995411740174859
FTRRNYATIEI	11	Unmodified	_FTRRNYATIEI_					0	0	0			REV__ENSG00000127990|ENST00000648936|SGCE	REV__ENSG00000127990|ENST00000648936|SGCE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.7952575683594	3	461.917493	1382.73065	2.8276	0.0013061	-4.3787	-0.0020226	-1.5511	-0.00071646	461.9152205960741	18.661	0.29915	18.419	18.224	18.524	-0.24256					12	5	3	0	0	0	0.024816	1	288	288		21.78	5.2506	1	32691	+		17969	22958	12515	12541	20256	20256					0.05459233891906479
FTRSSQLA	8	Unmodified	_FTRSSQLA_					0	0	0			REV__ENSG00000090857|ENST00000288050|PDPR	REV__ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7567443847656	2	455.243067	908.47158	-0.41117	-0.00018718	1.3191	0.00060053	0.90797	0.00041335	455.2434306764142	21.106	0.59052	21.106	20.801	21.392	0					21	11	3	0	0	0	0.027866	1	651	651		38.806	5.9937	1	46068	+		17970	20885	12516	12542	20257	20257					0.013683277206041566
FTRSSSLIE	9	Unmodified	_FTRSSSLIE_					0	0	0		ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2764282226562	2	520.274564	1038.53457	0.13719	7.1376E-05	3.6907	0.0019202	3.8279	0.0019915	520.2762067898617	91.899	1.4794	91.909	91.194	92.674	0.0094147					81	35	5	0	0	0	0.33245	1	11582	11582		71.296	5.4925	1	2226100			17971	10993	12517	12543	20258	20258					0.016848487179913718
FTRTWYLS	8	Unmodified	_FTRTWYLS_					0	0	0			REV__ENST00000453372.6_1_19:9764369-9764438:-|nuORF	REV__ENST00000453372.6_1_19:9764369-9764438:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.758056640625	2	537.274367	1072.53418	-0.88838	-0.0004773	-4.0756	-0.0021897	-4.964	-0.002667	537.7740525446368	39.299	0.18459	39.134	39.081	39.265	-0.16458					5	4	2	0	0	0	0.027866	1	3320	3320		16.473	4.9621	1	26624	+		17972	32749	12518	12544	20259	20259					0.0008147378880494216
FTRVTEFIL	9	Unmodified	_FTRVTEFIL_					0	0	0		OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant;OR8J1|p.G102Efs*11|1|0.29|ENSG00000172487|chr11:56360549-56360549|G/-|frameshift_variant;ENSG00000167822|ENST00000642058|OR8J3;ENSG00000172487|ENST00000533152|OR8J1	OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant	OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.2764892578125	2	563.318774	1124.623	-0.66406	-0.00037408	-4.0779	-0.0022972	-4.742	-0.0026712	563.3162009241726	81.826	0.52411	81.826	81.548	82.072	0					18	12	2	0	0	0	0.024323	1	10209	10209		35.618	0	1	54366			17973	7740	12519	12545	20260	20260					0.06566889028476908
FTSARMAL	8	Unmodified	_FTSARMAL_					0	0	0		ENST00000563711.5_1_16:21973998-21987565:+|nuORF;UQCRC2-NFU1|1|fusion;ENSG00000140740|ENST00000268379|UQCRC2	ENST00000563711.5_1_16:21973998-21987565:+|nuORF	ENST00000563711.5_1_16:21973998-21987565:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.2078552246094	2	448.736563	895.458573	0.355	0.0001593	1.4878	0.00066762	1.8428	0.00082692	448.73716820157114	20.987	0.48304	20.81	20.533	21.016	-0.17721					14	9	2	0	0	0	0.027866	1	616	616		38.806	15.764	1	22589			17974	5440	12520	12546	20261	20261					0.006661733368673595
FTSEGYLSY	9	Unmodified	_FTSEGYLSY_					0	0	0			REV__ENST00000494570.1_1_9:6984307-6986720:+|nuORF	REV__ENST00000494570.1_1_9:6984307-6986720:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7570190429688	2	533.740022	1065.46549	-0.60578	-0.00032333	3.1873	0.0017012	2.5816	0.0013779	534.2430449703446	59.002	0.19543	58.814	58.702	58.898	-0.18795					5	4	2	0	0	0	0.024323	1	6503	6503		44.117	8.4985	1	45116	+		17975	33786	12521	12547	20262	20262					-0.06462235301569308
FTSELEESRLE	11	Unmodified	_FTSELEESRLE_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.20782470703125	3	447.217385	1338.63033	0.2538	0.0001135	1.7255	0.00077168	1.9793	0.00088519	447.21814290891666	21.227	0.78302	21.036	20.637	21.42	-0.19072					41	15	3	0	0	0	0.024734	1	635	635		18.966	0	1	213940			17976	3600	12522	12548	20263	20263					-0.025444679524298408
FTSGRKVRTIG	11	Unmodified	_FTSGRKVRTIG_					0	0	0			REV__PPP2R3A|p.P95T|1|0.17|ENSG00000073711|chr3:136001781-136001781|C/A|missense_variant	REV__PPP2R3A|p.P95T|1|0.17|ENSG00000073711|chr3:136001781-136001781|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3529052734375	2	611.356754	1220.69895	-0.5279	-0.00032273	-0.63461	-0.00038798	-1.1625	-0.00071071	611.3562554984684	92.326	2.2035	92.318	91.16	93.364	-0.0082932					149	52	4	0	0	0	1.0281	1	11635	11635		30.569	4.5055	1	3964400	+		17977	37397	12523	12549	20264	20264					0.09743285928584555
FTSHLRLL	8	Unmodified	_FTSHLRLL_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MSMS	OPSCC_39_ClassI_Rep-3	3	493.79241943359375	2	493.792727	985.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.4	1	106.4	105.9	106.9	0.00014496								0	0	0	0.60555	1	13580	13580		47.916	7.343	1		+		17978	26292	12524	12550	20265	20265					0.07753770405372507
FTSISLLAL	9	Unmodified	_FTSISLLAL_					0	0	0			REV__nc|ENSG00000132842|O00203-3|AP3B1;REV__nc|ENSG00000103723|Q13367|AP3B2	REV__nc|ENSG00000132842|O00203-3|AP3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7620849609375	2	482.789318	963.564084	0.03079	1.4865E-05	0.32966	0.00015915	0.36045	0.00017402	482.7891833956739	86.514	0.73396	86.469	86.033	86.767	-0.045097					25	16	2	0	0	0	0.024457	1	10801	10801		37.159	5.2042	1	49742	+		17979	23324;21404	12525	12551	20266	20266					0.08084412734115176
FTSKDTYLSH	10	Unmodified	_FTSKDTYLSH_					0	0	0		ENST00000546313.1_1_11:114167278-114168881:+|nuORF;ENSG00000166741|ENST00000299964|NNMT	ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.88800048828125	3	400.196144	1197.5666	0.70146	0.00028072	0.34665	0.00013873	1.0481	0.00041945	400.196208525906	22.881	0.5084	22.695	22.415	22.923	-0.18539					23	10	3	0	0	0	0.03519	1	859	859		30.569	15.875	1	107660			17980	7599	12526	12552	20267	20267					-0.024277835988641527
FTSLGHQKI	9	Unmodified	_FTSLGHQKI_					0	0	0		ENSG00000181894|ENST00000598312|ZNF329	ENSG00000181894|ENST00000598312|ZNF329	ENSG00000181894|ENST00000598312|ZNF329	MSMS	OPSCC_39_ClassI_Rep-3	3	515.7892456054688	2	515.787641	1029.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.195	1	52.287	51.787	52.787	0.091938								0	0	0	0.29326	1	5509	5509		68.787	2.3575	1				17981	9078	12527	12553	20268	20268					0.04713162680127425
FTSLMQKF	8	Unmodified	_FTSLMQKF_					0	0	0		ENSG00000134716|ENST00000371204|CYP2J2	ENSG00000134716|ENST00000371204|CYP2J2	ENSG00000134716|ENST00000371204|CYP2J2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.79498291015625	2	501.259871	1000.50519	-0.56961	-0.00028552	-2.1573	-0.0010814	-2.7269	-0.0013669	501.25767461191106	50.226	0.15791	50.226	50.084	50.242	0					7	4	2	0	0	0	0.027866	1	5230	5230		25.45	0	1	93545			17982	4821	12528	12554	20269	20269					0.004956131681524312
FTSLPGLHRT	10	Unmodified	_FTSLPGLHRT_					0	0	0		ENST00000582734.1_1_19:40827791-40830098:-|nuORF	ENST00000582734.1_1_19:40827791-40830098:-|nuORF	ENST00000582734.1_1_19:40827791-40830098:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.81103515625	2	564.811648	1127.60874	0.60499	0.0003417	-1.9387	-0.001095	-1.3337	-0.00075327	564.8104336485193	107.05	0.6187	107.05	106.81	107.43	0					38	16	3	0	0	0	1.0616	1	13735	13735		37.812	3.639	1	140810			17983	17185	12529	12555	20270	20270					0.05004236600166223
FTSLQNLF	8	Unmodified	_FTSLQNLF_					0	0	0			REV__ENST00000367996.5_1_1:161155265-161155436:-|nuORF	REV__ENST00000367996.5_1_1:161155265-161155436:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7814025878906	2	485.255643	968.496732	0.8417	0.00040844	-0.51968	-0.00025218	0.32202	0.00015626	485.2551255265917	71.075	1.0568	70.782	70.329	71.386	-0.29291					53	25	3	0	0	0	0.027866	1	8530	8530		18.324	0	1	890750	+		17984	31038	12530	12556	20271	20271					0.011223825231809315
FTSNKIVLS	9	Unmodified	_FTSNKIVLS_					0	0	0			REV__NBN|p.S669F|1|0.27|ENSG00000104320|chr8:89946204-89946204|G/A|missense_variant	REV__NBN|p.S669F|1|0.27|ENSG00000104320|chr8:89946204-89946204|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7881774902344	2	504.78985	1007.56515	0.22578	0.00011397	-3.3819	-0.0017072	-3.1562	-0.0015932	504.78801312997444	19.662	1.0209	19.501	19.084	20.105	-0.16079					40	20	3	0	0	0	0.89441	1	443	443		32.812	3.6629	1	788150	+		17985	36421	12531	12557	20272	20272					0.06166627103038991
FTSNKIVLS	9	Unmodified	_FTSNKIVLS_					0	0	0			REV__NBN|p.S669F|1|0.27|ENSG00000104320|chr8:89946204-89946204|G/A|missense_variant	REV__NBN|p.S669F|1|0.27|ENSG00000104320|chr8:89946204-89946204|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7880859375	2	504.78985	1007.56515	0.82619	0.00041705	-3.9149	-0.0019762	-3.0887	-0.0015591	504.78778619347685	19.779	0.68029	19.579	19.355	20.035	-0.2001					31	13	3	0	0	0	0.77768	1	451	451		40.778	10.275	1	790300	+		17986	36421	12531	12557	20273	20273					0.06166627103038991
FTSPAFKPA	9	Unmodified	_FTSPAFKPA_					0	0	0		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2646789550781	2	483.258185	964.501818	-0.63452	-0.00030664	1.3546	0.00065464	0.72012	0.000348	483.2576247397456	37.532	0.1802	37.468	37.342	37.522	-0.063385					6	4	2	0	0	0	0.024495	1	3059	3059		26.693	22.011	1	89344			17987	2867	12532	12558	20274	20274					0.01814686385796449
FTSPSIIGST	10	Unmodified	_FTSPSIIGST_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.29766845703125	2	505.263665	1008.51278	-0.9564	-0.00048324	-1.3932	-0.00070393	-2.3496	-0.0011872	505.2627905987432	62.164	0.65304	61.986	61.576	62.229	-0.17782					33	16	3	0	0	0	0.03519	1	6935	6935		39.253	17.293	1	368250	+		17988	25880	12533	12559	20275	20275					0.008860439694558409
FTSRTLIF	8	Unmodified	_FTSRTLIF_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM;REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7250671386719	2	492.779285	983.544017	0.41734	0.00020566	0.16882	8.3193E-05	0.58616	0.00028885	492.77886400783876	71.995	0.36884	72.004	71.841	72.21	0.0097733					17	9	2	0	0	0	0.027866	1	8658	8658		26.796	1.3459	1	141780	+		17989	20873;29089	12534	12560	20276	20276					0.05158661794200725
FTSRTLIF	8	Unmodified	_FTSRTLIF_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM;REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.779285	983.544017	-0.15643	-7.7085E-05	-0.056405	-2.7795E-05	-0.21284	-0.00010488	492.77852636399166	72.104	0.37683	71.901	71.824	72.201	-0.20278	-0.051862	-0.00013832	NaN	19.36	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50181	+		17990	20873;29089	12534	12560							0.05158661794200725
FTSSKRFAK	9	Unmodified	_FTSSKRFAK_					0	0	0			REV__ZNF91|p.L981F|1|0.09|ENSG00000167232|chr19:23360038-23360038|G/A|missense_variant	REV__ZNF91|p.L981F|1|0.09|ENSG00000167232|chr19:23360038-23360038|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.8126831054688	2	536.300916	1070.58728	-1.5595	-0.00083639	-1.4435	-0.00077413	-3.003	-0.0016105	536.2999608776785	29.023	0.63375	29.023	28.736	29.37	0					30	15	4	0	0	0	0.024539	1	1773	1773		20.947	14.634	1	1250700	+		17991	37826	12535	12561	20277	20277					0.054808515714512396
FTSSPVPSFGL	11	Unmodified	_FTSSPVPSFGL_					0	0	0			REV__nc|ENSG00000067182|P19438-3|TNFRSF1A	REV__nc|ENSG00000067182|P19438-3|TNFRSF1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.774658203125	2	569.792589	1137.57063	0.035871	2.0439E-05	-0.60704	-0.00034589	-0.57117	-0.00032545	569.7919896584646	78.191	0.76619	78.035	77.617	78.383	-0.15591					30	15	3	0	0	0	0.024747	1	9277	9277		18.262	0	1	975700	+		17992	20353	12536	12562	20278	20278					0.0073430589486633835
FTSTLYTSL	9	Unmodified	_FTSTLYTSL_					0	0	0		ENSG00000163914|ENST00000296271|RHO	ENSG00000163914|ENST00000296271|RHO	ENSG00000163914|ENST00000296271|RHO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.80078125	2	516.76604	1031.51753	-0.51713	-0.00026724	0.34263	0.00017706	-0.1745	-9.0178E-05	516.7645931913396	36.552	0.19653	36.509	36.453	36.649	-0.042454					6	4	2	0	0	0	0.02435	1	2914	2914		51.335	0	1	62340			17993	7170	12537	12563	20279	20279					0.003029281122053362
FTTDEEEEY	9	Unmodified	_FTTDEEEEY_					0	0	0		ENST00000475160.1_1_1:36886054-36888388:-|nuORF	ENST00000475160.1_1_1:36886054-36888388:-|nuORF	ENST00000475160.1_1_1:36886054-36888388:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.7236328125	2	581.724766	1161.43498	-0.24616	-0.0001432	-3.1109	-0.0018097	-3.3571	-0.0019529	581.7229804533407	37.681	0.85903	37.488	37.229	38.088	-0.193					58	23	4	0	0	0	0.43973	1	3058	3058		63.306	2.3343	1	4659900			17994	15051	12538	12564	20280	20280					-0.13928058477267768
FTTDKVKI	8	Unmodified	_FTTDKVKI_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2903747558594	2	476.279118	950.543683	0.77418	0.00036872	-3.6924	-0.0017586	-2.9183	-0.0013899	476.27720120916655	19.121	0.59352	18.96	18.738	19.331	-0.16079					27	11	4	0	0	0	0.027866	1	360	360		47.916	14.4	1	300660	+		17995	25138	12539	12565	20281	20281					0.06643242074335376
FTTDQLRTN	9	Unmodified	_FTTDQLRTN_					0	0	0			REV__nc|ENSG00000158882|Q969M1-2|TOMM40L	REV__nc|ENSG00000158882|Q969M1-2|TOMM40L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3234252929688	2	548.275095	1094.53564	-1.0431	-0.00057192	-2.1238	-0.0011644	-3.1669	-0.0017363	548.2735212800907	74.308	1.3382	74.317	73.753	75.091	0.0096512					54	31	2	0	0	0	0.024495	1	9121	9121		19.997	9.1312	1	257030	+		17996	25225	12540	12566	20282	20282					-0.00784936913078127
FTTELGQAR	9	Unmodified	_FTTELGQAR_					0	0	0		ENST00000484500.5_1_3:125642769-125647435:+|nuORF	ENST00000484500.5_1_3:125642769-125647435:+|nuORF	ENST00000484500.5_1_3:125642769-125647435:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7885437011719	2	511.766906	1021.51926	0.19563	0.00010012	3.0953	0.0015841	3.291	0.0016842	511.76850649279544	86.182	0.82436	86.044	85.619	86.443	-0.13734					37	18	3	0	0	0	0.024477	1	10410	10410		20.947	0	1	625750			17997	15301	12541	12567	20283	20283					0.009359819208157205
FTTELGQAR	9	Unmodified	_FTTELGQAR_					0	0	0		ENST00000484500.5_1_3:125642769-125647435:+|nuORF	ENST00000484500.5_1_3:125642769-125647435:+|nuORF	ENST00000484500.5_1_3:125642769-125647435:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.766906	1021.51926	0.13791	7.0575E-05	2.977	0.0015235	3.1149	0.0015941	511.76859741986476	86.291	0.83116	86.105	85.772	86.604	-0.18695	-0.030413	-0.00082863	NaN	5.5578	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722470			17998	15301	12541	12567							0.009359819208157205
FTTELGRDG	9	Unmodified	_FTTELGRDG_					0	0	0		ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2	ENSG00000186523|ENST00000448228|FAM86B1	ENSG00000186523|ENST00000448228|FAM86B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7776794433594	2	498.243264	994.471974	-0.47471	-0.00023652	-3.3293	-0.0016588	-3.804	-0.0018953	498.2415678972007	27.079	0.85257	26.911	26.55	27.402	-0.16816					30	19	2	0	0	0	0.024319	1	1411	1411		31.53	2.3803	1	72814			17999	5787	12542	12568	20284	20284					-0.025482973501766537
FTTFLAMPY	9	Unmodified	_FTTFLAMPY_					0	0	0			REV__ENSG00000127412|ENST00000265310|TRPV5	REV__ENSG00000127412|ENST00000265310|TRPV5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8106079101562	2	545.767529	1089.5205	-0.70163	-0.00038292	-2.3598	-0.0012879	-3.0614	-0.0016708	545.7665556805057	70.042	0.79478	69.774	69.121	69.916	-0.26725					28	18	2	0	0	0	0.024535	1	8153	8153		25.45	4.5032	1	121070	+		18000	22928	12543	12569	20285	20285					-0.020675200346431666
FTTFLFLPDL	10	Unmodified	_FTTFLFLPDL_					0	0	0		ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.8769226074219	3	405.221631	1212.64306	0.63688	0.00025808	0.71156	0.00028834	1.3484	0.00054642	405.22177546945625	50.093	0.89764	49.987	49.671	50.569	-0.10558					52	23	3	0	0	0	0.03519	1	5035	5035		20.03	0	1	1845600			18001	15420	12544	12570	20286	20286					0.04524639968417432
FTTFVHKAD	9	Unmodified	_FTTFVHKAD_					0	0	0			REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7138671875	2	533.271824	1064.5291	0.19735	0.00010524	-4.4527	-0.0023745	-4.2554	-0.0022693	533.2693150816916	86.414	0.56667	86.272	86.016	86.582	-0.14217					31	12	3	0	0	0	0.024477	1	10464	10464		20.947	0	1	343480	+		18002	26964	12545	12571	20287	20287					-0.0005883007379452465
FTTILFFI	8	Unmodified	_FTTILFFI_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.289794921875	2	501.288954	1000.56336	0.7613	0.00038163	2.2248	0.0011153	2.9861	0.0014969	501.28990286512953	98.13	1.7563	98.127	97.769	99.525	-0.0020752					83	40	4	0	0	0	1.0017	1	12480	12480		37.028	0	1	1679000			18003	9488	12546	12572	20288	20288					0.06309618085094826
FTTIPDVEV	9	Unmodified	_FTTIPDVEV_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7862854003906	2	510.76604	1019.51753	0.18209	9.3005E-05	1.6885	0.00086244	1.8706	0.00095545	511.2691882360996	49.93	0.22724	49.824	49.745	49.972	-0.10558					6	5	2	0	0	0	0.024477	1	5059	5059		44.117	17.321	1	54487	+		18004	27995	12547	12573	20289	20289					0.00854928112187281
FTTKDSSAAW	10	Unmodified	_FTTKDSSAAW_					0	0	0		ENSG00000197919|ENST00000276927|IFNA1;ENSG00000233816|ENST00000610660|IFNA13	ENSG00000197919|ENST00000276927|IFNA1	ENSG00000197919|ENST00000276927|IFNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.2633666992188	2	557.264196	1112.51384	-0.96501	-0.00053776	0.38469	0.00021437	-0.58032	-0.00032339	557.2642572672568	44.498	0.94184	44.393	44.03	44.972	-0.10468					61	24	4	0	0	0	0.88896	1	4164	4164		54.776	4.7518	1	3424700			18005	10066	12548	12574	20290	20290					-0.03791741661666492
FTTLKRKR	8	Unmodified	_FTTLKRKR_					0	0	0			REV__PREX2|p.P1555Hfs*11|1|0.2|ENSG00000046889|chr8:68217674-68217674|C/-|frameshift_variant;REV__nc|ENSG00000046889|Q70Z35-3|PREX2	REV__PREX2|p.P1555Hfs*11|1|0.2|ENSG00000046889|chr8:68217674-68217674|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3150024414062	2	525.33255	1048.65055	-0.26877	-0.00014119	-3.0824	-0.0016193	-3.3512	-0.0017605	525.3304009918583	73.783	0.35056	73.518	73.256	73.607	-0.26479					11	8	2	0	0	0	0.027866	1	8687	8687		4.3163	0.90626	1	177690	+		18006	20118;34513	12549	12575	20291	20291					0.1281683707936736
FTTLPKIAD	9	Unmodified	_FTTLPKIAD_					0	0	0			REV__ENST00000585403.5_1_17:40719142-40721608:+|nuORF	REV__ENST00000585403.5_1_17:40719142-40721608:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.8132629394531	2	503.2844	1004.55425	0.80658	0.00040594	0.80948	0.0004074	1.6161	0.00081334	503.2848987866603	96.673	0.79878	96.55	96.309	97.108	-0.12305					23	17	2	0	0	0	0.024374	1	11956	11956		32.812	7.2384	1	59130	+		18007	35572	12550	12576	20292	20292					0.052152247287381215
FTTLWITQP	9	Unmodified	_FTTLWITQP_					0	0	0			REV__nc|ENSG00000170615|P58743-5|SLC26A5	REV__nc|ENSG00000170615|P58743-5|SLC26A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7974243164062	2	553.797675	1105.5808	0.022292	1.2345E-05	-0.055405	-3.0683E-05	-0.033113	-1.8338E-05	553.797488373303	80.604	2.2037	80.366	80.082	82.286	-0.23784					113	52	3	0	0	0	0.82115	1	9693	9693		37.812	0	1	2313500	+		18008	36923	12551	12577	20293	20293					0.03222913620084
FTTLWITQP	9	Unmodified	_FTTLWITQP_					0	0	0			REV__nc|ENSG00000170615|P58743-5|SLC26A5	REV__nc|ENSG00000170615|P58743-5|SLC26A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7966918945312	2	553.797675	1105.5808	0.26161	0.00014488	-0.57645	-0.00031924	-0.31484	-0.00017436	553.7972528393377	80.611	1.7813	80.405	80.092	81.873	-0.20633					102	42	4	0	0	0	0.42604	1	9683	9683		64.207	1.2288	1	2756800	+		18009	36923	12551	12577	20294	20294					0.03222913620084
FTTMAYDRY	9	Unmodified	_FTTMAYDRY_					0	0	0		ENSG00000197437|ENST00000642119|OR13G1	ENSG00000197437|ENST00000642119|OR13G1	ENSG00000197437|ENST00000642119|OR13G1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2908935546875	2	584.260599	1166.50665	-0.53855	-0.00031465	3.5716	0.0020867	3.033	0.0017721	584.2624273956648	71.767	0.39855	71.505	71.322	71.72	-0.26199					20	9	3	0	0	0	0.024436	1	8408	8408		38.806	17.859	1	145230			18010	9996	12552	12578	20295	20295					-0.06994797533752717
FTTMLKHERA	10	Unmodified	_FTTMLKHERA_					0	0	0		nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	411.2408142089844	3	411.885135	1232.63358	3.5258	0.0014522	2.7387	0.001128	6.2645	0.0025803	411.88619525646766	19.118	0.29568	19.184	19.093	19.389	0.066195					7	5	2	0	0	0	0.03519	1	346	346		32.751	22.164	1	17182			18011	6419	12553	12579	20296	20296					0.02656548411255244
FTTRTWKD	8	Unmodified	_FTTRTWKD_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.7672119140625	2	527.769448	1053.52434	-0.85509	-0.00045129	-3.4494	-0.0018205	-4.3045	-0.0022718	527.7675350643111	29.813	0.98012	29.822	29.474	30.455	0.0086689					58	23	4	0	0	0	0.74904	1	1839	1839		63.306	1.1989	1	2486400	+		18012	23902	12554	12580	20297	20297					-0.00027714216571439465
FTTSLPPMLL	10	Unmodified	_FTTSLPPMLL_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2540893554688	2	560.309561	1118.60457	0.50724	0.00028421	2.8993	0.0016245	3.4065	0.0019087	560.310990509339	64.324	0.28667	64.324	64.097	64.384	0					12	7	2	0	0	0	0.03519	1	7543	7543		34.173	0	1	84224			18013	972	12555	12581	20298	20298					0.050010110622451975
FTVEAHSNETI	11	Unmodified	_FTVEAHSNETI_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.22088623046875	3	416.534937	1246.58298	-0.34992	-0.00014576	1.1655	0.00048545	0.81554	0.0003397	416.53536422070016	24.659	0.50223	24.444	24.218	24.72	-0.2151					33	11	4	0	0	0	0.024765	1	1111	1111		26.75	10.22	1	749740			18014	6938	12556	12582	20299	20299					-0.030447024327713734
FTVELERGP	9	Unmodified	_FTVELERGP_					0	0	0		nc|ENSG00000157927|Q96JH8-3|RADIL;ENST00000472999.5_1_7:4839011-4843599:-|nuORF;nc|ENSG00000157927|Q96JH8-2|RADIL;nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3041381835938	2	524.277106	1046.53966	0.28005	0.00014682	3.4782	0.0018235	3.7582	0.0019703	524.2788077523722	89.633	0.76665	89.496	89.231	89.998	-0.13761					28	17	2	0	0	0	0.024323	1	10940	10940		44.117	11.304	1	326720			18015	6632	12557	12583	20300	20300					0.018251525806363134
FTVFILGI	8	Unmodified	_FTVFILGI_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7400817871094	2	455.275847	908.537141	-0.26176	-0.00011917	-3.6082	-0.0016427	-3.87	-0.0017619	455.27389388478065	74.603	0.62621	74.613	74.268	74.895	0.0096512					19	14	2	0	0	0	0.027866	1	9086	9086		21.702	1.2205	1	80086			18016	3474	12558	12584	20301	20301					0.0792134891362366
FTVHVRHVT	9	Unmodified	_FTVHVRHVT_					0	0	0			REV__ENSG00000165905|ENST00000401752|LARGE2	REV__ENSG00000165905|ENST00000401752|LARGE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.33154296875	2	548.306532	1094.59851	0.27957	0.00015329	1.3586	0.00074493	1.6382	0.00089822	548.3068635085203	101.47	1.382	101.34	100.77	102.15	-0.13156					46	31	3	0	0	0	0.024344	1	12576	12576		54.776	30.574	1	198510	+		18017	25944	12559	12585	20302	20302					0.05499673665599403
FTVKWLRRSRH	11	Unmodified	_FTVKWLRRSRH_					0	0	0		nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.9587707519531	3	495.956505	1484.84768	0.30887	0.00015319	4.2609	0.0021132	4.5697	0.0022664	495.9586267866749	102.2	1.5211	102.2	101.58	103.1	-0.0054398					89	35	3	0	0	0	1.096	1	13039	13039		12.433	0.79691	1	815360			18018	18780	12560	12586	20303	20303					0.12465436622164816
FTVKYSAHEQ	10	Unmodified	_FTVKYSAHEQ_					0	0	0		nc|ENSG00000107829|P57775|FBXW4;ENSG00000107829|ENST00000331272|FBXW4	nc|ENSG00000107829|P57775|FBXW4	nc|ENSG00000107829|P57775|FBXW4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5549011230469	3	403.868139	1208.58259	0.90966	0.00036738	1.5178	0.00061298	2.4274	0.00098037	404.2022564485431	22.245	0.23227	22.056	21.959	22.191	-0.18894					5	4	2	0	0	0	0.03519	1	779	779		9.2118	4.3061	1	6382.4			18019	2861	12561	12587	20304	20304					-0.01336077361952448
FTVLATSL	8	Unmodified	_FTVLATSL_					0	0	0			REV__ENST00000374050.3_1_9:117360041-117360107:+|nuORF	REV__ENST00000374050.3_1_9:117360041-117360107:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2461853027344	2	426.247286	850.48002	-0.078627	-3.3515E-05	-2.7834	-0.0011864	-2.862	-0.0012199	426.245984200577	89.563	1.9241	89.435	88.405	90.329	-0.12775					94	45	4	0	0	0	1.0239	1	10960	10960		33.516	1.5607	1	680360	+		18020	31285	12562	12588	20305	20305					0.04879881637236849
FTVLTYLVD	9	Unmodified	_FTVLTYLVD_					0	0	0		ENSG00000157240|ENST00000287934|FZD1;ENSG00000155760|ENST00000286201|FZD7	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8090209960938	2	535.792058	1069.56956	-1.1574	-0.00062013	-1.2301	-0.00065905	-2.3875	-0.0012792	535.7905287796382	84.013	1.227	84.039	83.727	84.954	0.02655					63	28	4	0	0	0	0.024487	1	10554	10554		17.365	0	1	389910			18021	6587	12563	12589	20306	20306					0.03756091525951888
FTVMDHDW	8	Unmodified	_FTVMDHDW_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7589721679688	2	525.72111	1049.42767	-0.661	-0.0003475	-1.242	-0.00065294	-1.903	-0.0010004	526.2219275907698	57.152	0.14299	56.985	56.858	57.001	-0.1672					5	3	2	0	0	0	0.027866	1	6226	6226		25.45	0	1	79620			18022	822	12564	12590	20307	20307					-0.09507024768026895
FTVNKIKTP	9	Unmodified	_FTVNKIKTP_					0	0	0		ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	ENSG00000122012|ENST00000502798|SV2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.3057250976562	2	524.313492	1046.61243	-0.46386	-0.00024321	0.11655	6.1108E-05	-0.34731	-0.0001821	524.313586738568	73.555	1.9281	73.283	72.883	74.811	-0.27126					157	47	5	0	0	0	0.70156	1	9007	9007		45.972	1.5951	1	37298000			18023	3906	12565	12591	20308	20308					0.09098906374038052
FTVPSPLPVS	10	Unmodified	_FTVPSPLPVS_					0	0	0			REV__ENST00000300060.6_1_15:90349934-90358086:-|nuORF	REV__ENST00000300060.6_1_15:90349934-90358086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7691040039062	2	522.292225	1042.5699	-0.75705	-0.0003954	-2.4242	-0.0012661	-3.1813	-0.0016615	522.2910268946032	56.165	1.0684	56.165	55.61	56.678	0					68	29	4	0	0	0	0.03519	1	6158	6158		49.442	5.3247	1	1405900	+		18024	30042	12566	12592	20309	20309					0.05031511245783804
FTVPSPLPVS	10	Unmodified	_FTVPSPLPVS_					0	0	0			REV__ENST00000300060.6_1_15:90349934-90358086:-|nuORF	REV__ENST00000300060.6_1_15:90349934-90358086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7691040039062	2	522.292225	1042.5699	0.10059	5.2535E-05	-4.0367	-0.0021084	-3.9362	-0.0020558	522.2898750709559	55.628	0.50229	55.628	55.39	55.892	0					22	13	2	0	0	0	0.03519	1	6158	6158		49.442	0	1	689670	+		18025	30042	12566	12592	20310	20310					0.05031511245783804
FTVPSRTKLY	10	Unmodified	_FTVPSRTKLY_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.7250061035156	3	404.564279	1210.67101	0.19299	7.8078E-05	-1.8707	-0.00075682	-1.6777	-0.00067874	404.5635122219259	20.034	1.194	19.929	19.654	20.848	-0.10477					40	24	2	0	0	0	0.03519	1	521	521		20.837	0	1	41639	+		18026	22799	12567	12593	20311	20311					0.07409962948509019
FTVQPPTEQ	9	Unmodified	_FTVQPPTEQ_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.7743530273438	2	523.761289	1045.50803	-0.35318	-0.00018498	0.10435	5.4652E-05	-0.24884	-0.00013033	523.7614132710972	61.262	1.3198	61.056	60.62	61.94	-0.20599					70	32	4	0	0	0	0.6238	1	6852	6852		51.193	4.7359	1	1335600	+		18027	25273	12568	12594	20312	20312					-0.01290840173351171
FTVRYPTML	9	Unmodified	_FTVRYPTML_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.2999267578125	2	564.299527	1126.5845	0.97486	0.00055011	-0.82715	-0.00046676	0.1477	8.3349E-05	564.2989544882097	74.486	1.097	74.486	74.172	75.269	0					76	26	5	0	0	0	0.31037	3	9109	9109;9119;9131		74.255	2.9122	1	2308300	+		18028	25929	12569	12595	20313;20314;20315	20313					0.02627260122289954
FTVRYPTML	9	Unmodified	_FTVRYPTML_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.2994384765625	2	564.299527	1126.5845	-0.00012427	-7.0126E-08	0.21901	0.00012359	0.21888	0.00012351	564.299558126796	74.706	1.167	74.447	74.158	75.325	-0.25887					77	28	4	0	0	0	0.42604	1	9131	9131		64.207	4.089	1	2219400	+		18029	25929	12569	12595	20316	20316					0.02627260122289954
FTVRYPTML	9	Unmodified	_FTVRYPTML_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.2996215820312	2	564.299527	1126.5845	-1.0102	-0.00057005	1.0778	0.00060821	0.067622	3.8159E-05	564.30004153312	74.494	1.107	74.503	74.18	75.288	0.0096512					75	26	4	0	0	0	0.31037	2	9056	9042;9056		74.255	8.3576	1	2107000	+		18030	25929	12569	12595	20317;20318	20318					0.02627260122289954
FTVSFREG	8	Unmodified	_FTVSFREG_					0	0	0			REV__chr21:41427866-41430594|226|23.63|0.5|5.57|+|1|TE_info:Charlie2b,Charlie2b_dup3470,hAT-Charlie,DNA,acceptor,+,41430594,41430715|MX1,None|5	REV__chr21:41427866-41430594|226|23.63|0.5|5.57|+|1|TE_info:Charlie2b,Charlie2b_dup3470,hAT-Charlie,DNA,acceptor,+,41430594,41430715|MX1,None|5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.75494384765625	2	471.737617	941.460681	-0.28821	-0.00013596	0.17838	8.4149E-05	-0.10983	-5.1809E-05	471.73753315436545	37.68	0.82308	37.68	37.343	38.166	0					56	23	4	0	0	0	0.027866	1	3092	3092		25.45	8.0852	1	2305900	+		18031	19421	12570	12596	20319	20319					-0.012390746536652841
FTVSKRKRR	9	Unmodified	_FTVSKRKRR_					0	0	0			REV__ENSG00000189357|ENST00000419782|SPATA31D4	REV__ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3429565429688	2	589.367456	1176.72036	-1.4249	-0.00083978	0.37438	0.00022065	-1.0505	-0.00061913	589.367548521231	90.733	0.1276	90.608	90.502	90.629	-0.12512					4	2	2	0	0	0	0.024541	1	11116	11116		10.265	0	1	23047	+		18032	27882	12571	12597	20320	20320					0.13906715747975795
FTVTDGEVK	9	Unmodified	_FTVTDGEVK_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2627868652344	2	498.25584	994.497126	-1.1063	-0.00055121	-4.1268	-0.0020562	-5.233	-0.0026074	498.253793671998	48.555	0.8215	48.279	48.08	48.901	-0.27598					42	22	3	0	0	0	0.024257	1	4881	4881		49.536	15.364	1	2338800	+		18033	36945	12572	12598	20321	20321					-0.0003424254761057455
FTVTDPRNL	9	Unmodified	_FTVTDPRNL_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	ENSG00000107819|ENST00000393459|SFXN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3079833984375	2	531.782556	1061.55056	0.52192	0.00027755	0.9965	0.00052992	1.5184	0.00080747	531.7833226254875	71.21	0.94812	70.921	70.589	71.537	-0.28858					66	23	6	0	0	0	0.02435	1	8559	8559		42.396	0	1	617720			18034	2860	12573	12599	20322	20322					0.022245549549097632
FTVVILISF	9	Unmodified	_FTVVILISF_					0	0	0			REV__ENSG00000226761|ENST00000533467|TAS2R46	REV__ENSG00000226761|ENST00000533467|TAS2R46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7880249023438	2	519.815336	1037.61612	-0.60254	-0.00031321	3.4813	0.0018096	2.8787	0.0014964	519.8180726794865	26.51	0.12525	26.51	26.406	26.531	0					4	2	2	0	0	0	0.024523	1	1359	1359		21.96	0.25755	1	11178	+		18035	28877	12574	12600	20323	20323					0.09881576147904525
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.772216796875	2	564.771657	1127.52876	-0.14753	-8.3321E-05	0.16037	9.0575E-05	0.012843	7.2536E-06	564.7716881132942	87.46	1.1024	87.46	87.152	88.255	0					63	26	4	0	0	0	0.14024	1	11002	11002		101.6	37.393	1	1342300			18036	2394	12575	12601	20324	20324					-0.02990249793674593
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.7722778320312	2	564.771657	1127.52876	0.061351	3.4649E-05	-0.21143	-0.00011941	-0.15008	-8.476E-05	564.771500707325	87.422	1.6035	87.387	86.563	88.167	-0.035355					82	38	4	0	0	0	0.15029	2	10963	10963;10975		99.375	38.403	1	1468000			18037	2394	12575	12601	20325;20326	20325					-0.02990249793674593
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.7720947265625	2	564.771657	1127.52876	0.3088	0.0001744	-0.40238	-0.00022725	-0.093578	-5.285E-05	564.7713998529099	87.476	1.9113	87.497	86.33	88.241	0.021263					81	45	4	0	0	0	0.29158	1	10946	10946		76.774	25.439	1	1394700			18038	2394	12575	12601	20327	20327					-0.02990249793674593
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.7689208984375	2	564.771657	1127.52876	-0.15809	-8.9285E-05	0.12509	7.0646E-05	-0.033003	-1.8639E-05	564.7716051666858	87.478	0.74263	87.3	87.028	87.771	-0.17875					39	17	3	0	0	0	0.53979	2	10649	10635;10649		56.721	5.3835	1	891060			18039	2394	12575	12601	20328;20329	20329					-0.02990249793674593
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.77099609375	2	564.771657	1127.52876	0.52375	0.0002958	-0.70883	-0.00040033	-0.18508	-0.00010453	564.7711743056772	87.419	0.75042	87.283	87.009	87.76	-0.13613					43	17	3	0	0	0	0.43973	2	10638	10638;10657		63.306	6.5852	1	851520			18040	2394	12575	12601	20330;20331	20330					-0.02990249793674593
FTWEGLYNV	9	Unmodified	_FTWEGLYNV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.77001953125	2	564.771657	1127.52876	-0.077545	-4.3795E-05	0.11991	6.772E-05	0.042363	2.3925E-05	564.7716689719873	87.478	0.94319	87.341	87.038	87.981	-0.13734					46	22	3	0	0	0	0.35646	2	10642	10623;10642		68.787	17.451	1	907520			18041	2394	12575	12601	20332;20333	20333					-0.02990249793674593
FTWGWDSSK	9	Unmodified	_FTWGWDSSK_					0	0	0		nc|ENSG00000145604|Q13309-2|SKP2;ENSG00000145604|ENST00000274255|SKP2	nc|ENSG00000145604|Q13309-2|SKP2	nc|ENSG00000145604|Q13309-2|SKP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2688598632812	2	557.253631	1112.49271	-1.049	-0.00058457	-1.5322	-0.00085384	-2.5812	-0.0014384	557.2521996689721	48.626	0.53464	48.35	48.151	48.685	-0.27598					28	14	3	0	0	0	0.024418	1	4873	4873		45.972	14.442	1	128160			18042	5821	12576	12602	20334	20334					-0.05903706970525491
FTWNLYST	8	Unmodified	_FTWNLYST_					0	0	0			REV__ENST00000541377.5_1_2:122363504-122363705:-|nuORF	REV__ENST00000541377.5_1_2:122363504-122363705:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	516.245275	1030.476	-0.30243	-0.00015613	4.2194	0.0021782	3.917	0.0020221	516.2472195065803	53.874	0.41089	53.677	53.387	53.798	-0.19739					25	12	3	0	0	0	0.027866	1	5644	5644		53.351	0	1	402390	+		18043	34771	12577	12603	20335	20335					-0.03802207856460882
FTWSRLDSSQQ	11	Unmodified	_FTWSRLDSSQQ_					0	0	0			REV__ENSG00000165507|ENST00000298295|DEPP1	REV__ENSG00000165507|ENST00000298295|DEPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.5657043457031	3	452.217719	1353.63133	2.5475	0.001152	1.9308	0.00087314	4.4783	0.0020252	452.55227498067023	18.64	0.29234	18.64	18.382	18.674	0					6	5	2	0	0	0	0.024727	1	318	318		17.833	0	1	13265	+		18044	25896	12578	12604	20336	20336					-0.03134208792857862
FTWVAHPV	8	Unmodified	_FTWVAHPV_					0	0	0			REV__PRDM7|p.P426T|1|0.14|ENSG00000126856|chr16:90058492-90058492|G/T|missense_variant	REV__PRDM7|p.P426T|1|0.14|ENSG00000126856|chr16:90058492-90058492|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.73529052734375	2	478.75307	955.491587	0.47907	0.00022935	0.49504	0.000237	0.97411	0.00046636	478.75098877620826	59.804	0.18825	59.628	59.478	59.667	-0.1761					6	4	2	0	0	0	0.027866	1	6631	6631		35.201	0	1	42469	+		18045	37400	12579	12605	20337	20337					0.012061234512202645
FTWWERGEG	9	Unmodified	_FTWWERGEG_					0	0	0		ENST00000589874.2_1_19:1432091-1433000:+|nuORF	ENST00000589874.2_1_19:1432091-1433000:+|nuORF	ENST00000589874.2_1_19:1432091-1433000:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.2899169921875	2	584.26453	1166.51451	-0.22431	-0.00013105	-4.0897	-0.0023895	-4.314	-0.0025205	584.2621310952496	71.646	0.39446	71.44	71.305	71.699	-0.20613					15	9	2	0	0	0	0.024539	1	8359	8359		27.882	11.409	1	177320			18046	17317	12580	12606	20338	20338					-0.06208902221965218
FTWYISSIS	9	Unmodified	_FTWYISSIS_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|60|1|anti-sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|60|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3128662109375	2	552.274032	1102.53351	-0.15907	-8.7848E-05	1.0912	0.00060262	0.9321	0.00051478	552.2738048933398	72.641	0.8138	72.364	72.028	72.842	-0.2769					36	18	3	0	0	0	0.024523	1	8532	8532		21.96	0	1	188570	+		18047	36198	12581	12607	20339	20339					-0.013653656508950007
FTYDGEQMASL	11	Unmodified	_FTYDGEQMASL_					0	0	0			REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.7820129394531	3	421.185028	1260.53325	2.3462	0.00098817	-2.0237	-0.00085235	0.32247	0.00013582	421.1838930705695	24.705	0.26075	24.525	24.418	24.678	-0.18089					6	5	2	0	0	0	0.024752	1	1068	1068		22.562	0	1	30319	+		18048	23741	12582	12608	20340	20340					-0.08659153433063693
FTYKLINL	8	Unmodified	_FTYKLINL_					0	0	0			REV__ENST00000486271.5_1_3:112732082-112732223:-|nuORF	REV__ENST00000486271.5_1_3:112732082-112732223:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8280944824219	2	506.29731	1010.58007	-0.12372	-6.2637E-05	2.1268	0.0010768	2.0031	0.0010141	506.80070769914795	67.758	0.28572	67.47	67.307	67.593	-0.28834					9	6	2	0	0	0	0.027866	1	8071	8071		30.504	10.022	1	98486	+		18049	33583	12583	12609	20341	20341					0.07520118971035572
FTYLLLSLSSI	11	Unmodified	_FTYLLLSLSSI_					0	0	0		ENST00000376717.6_3_9:79227295-79227583:-|nuORF	ENST00000376717.6_3_9:79227295-79227583:-|nuORF	ENST00000376717.6_3_9:79227295-79227583:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	419.5777282714844	3	419.576073	1255.70639	-0.0023189	-9.7298E-07	3.4882	0.0014636	3.4859	0.0014626	419.57756794524124	21.322	1.1609	21.394	21.057	22.218	0.071487					69	23	4	0	0	0	0.96926	1	606	606		43.651	8.4988	1	820250			18050	13186	12584	12610	20342	20342					0.08876580685705449
FTYNENSASA	10	Unmodified	_FTYNENSASA_					0	0	0			REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.2528686523438	2	552.235635	1102.45672	-0.17393	-9.6049E-05	-0.55981	-0.00030915	-0.73374	-0.0004052	552.2356010004262	46.017	0.38436	46.017	45.852	46.236	0					13	10	2	0	0	0	0.03519	1	4507	4507		21.686	6.8209	1	229700	+		18051	28072	12585	12611	20343	20343					-0.09041208938037926
FTYSITPGGP	10	Unmodified	_FTYSITPGGP_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.2791137695312	2	520.258382	1038.50221	-1.013	-0.00052701	-0.76077	-0.0003958	-1.7737	-0.00092281	520.257812230274	61.915	0.31742	61.978	61.735	62.052	0.062763					13	8	2	0	0	0	0.03519	1	7077	7077		51.335	10.763	1	190220	+		18052	19884	12586	12612	20344	20344					-0.015499386849796792
FTYSLLRRPF	10	Unmodified	_FTYSLLRRPF_					0	0	0		ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.91265869140625	3	433.91179	1298.71354	-0.26593	-0.00011539	2.6062	0.0011309	2.3402	0.0010155	433.9129246882194	21.127	1.3876	21.036	20.439	21.826	-0.090094					76	28	5	0	0	0	1.1295	1	626	626		26.063	0.17167	1	1169200			18053	6464	12587	12613	20345	20345					0.07613358076764598
FVAALSNASW	10	Unmodified	_FVAALSNASW_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7880249023438	2	533.271824	1064.5291	0.43715	0.00023312	1.8469	0.00098491	2.2841	0.001218	533.2728122415164	73.83	0.64221	73.83	73.698	74.34	0					16	14	2	0	0	0	0.03519	1	9037	9037		40.778	11.629	1	199330	+		18054	36443	12588	12614	20346	20346					-0.0005883007381726202
FVACFFQL	8	Unmodified	_FVACFFQL_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.26898193359375	2	487.743857	973.47316	-0.75255	-0.00036705	-1.8619	-0.00090815	-2.6145	-0.0012752	487.7432688461413	46.877	0.44999	46.936	46.729	47.179	0.059055					32	11	4	0	0	0	0.027866	1	4574	4574		28.254	0	1	491070	+		18055	25554	12589	12615	20347	20347					-0.014637545149867037
FVAETTEEL	9	Unmodified	_FVAETTEEL_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.7719116210938	2	519.75313	1037.49171	-0.030242	-1.5719E-05	0.14291	7.4278E-05	0.11267	5.856E-05	519.7531515490488	73.572	0.47958	73.381	73.123	73.602	-0.19026					28	11	3	0	0	0	0.024354	1	8623	8623		57.811	20.652	1	307230			18056	1930	12590	12616	20348	20348					-0.025539661300854277
FVAIVKKKD	9	Unmodified	_FVAIVKKKD_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2407836914062	2	524.331685	1046.64882	-0.68829	-0.00036089	-0.2952	-0.00015478	-0.98349	-0.00051567	524.3315703261117	30.436	0.36993	30.258	30.04	30.41	-0.17818					17	8	3	0	0	0	0.024457	1	1915	1915		37.159	6.6555	1	85892	+		18057	21973	12591	12617	20349	20349					0.1273578327075029
FVAKTYTNL	9	Unmodified	_FVAKTYTNL_					0	0	0			REV__ENSG00000154080|ENST00000618847|CHST9	REV__ENSG00000154080|ENST00000618847|CHST9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.790771484375	2	528.78985	1055.56515	0.0069581	3.6794E-06	0.8966	0.00047411	0.90356	0.00047779	528.7902932408939	104.52	0.86827	104.39	104.1	104.97	-0.1256					50	24	3	0	0	0	0.74711	1	12984	12984		42.864	2.2917	1	991500	+		18058	24931	12592	12618	20350	20350					0.03958627103043
FVALAVALL	9	Unmodified	_FVALAVALL_					0	0	0		nc|ENSG00000124215|Q8IXH8-1|CDH26;ENSG00000124215|ENST00000348616|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2673645019531	2	458.796946	915.57934	0.38164	0.00017509	0.20188	9.262E-05	0.58351	0.00026771	458.79678201883075	75.183	0.58431	75.007	74.689	75.273	-0.17548					18	13	2	0	0	0	0.023868	1	8859	8859		49.211	5.094	1	102780			18059	18237	12593	12619	20351	20351					0.11817324321987144
FVALGMIRGV	10	Unmodified	_FVALGMIRGV_					0	0	0			REV__ENSG00000198742|ENST00000361368|SMURF1	REV__ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.783935546875	2	531.810062	1061.60557	-0.18118	-9.6352E-05	-3.4228	-0.0018203	-3.6039	-0.0019166	531.808022143951	82.902	0.73317	82.721	82.374	83.107	-0.18079					24	16	2	0	0	0	0.03519	1	10031	10031		24.203	2.5004	1	75614	+		18060	28461	12594	12620	20352	20352					0.07723270221799794
FVALMRVW	8	Unmodified	_FVALMRVW_					0	0	0			REV__ENST00000464690.5_1_3:120129559-120169830:-|nuORF	REV__ENST00000464690.5_1_3:120129559-120169830:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.28839111328125	2	511.286223	1020.55789	-0.42956	-0.00021963	1.5553	0.00079521	1.1258	0.00057559	511.28694434271335	65.226	0.82123	64.991	64.728	65.549	-0.2345					29	19	2	0	0	0	0.027866	1	7402	7402		29.842	9.8448	1	480630	+		18061	32984	12595	12621	20353	20353					0.0484361602162835
FVALPSGMCF	10	Carbamidomethyl (C)	_FVALPSGMC(Carbamidomethyl (C))F_	FVALPSGMC(1)F		FVALPSGMC(56)F		0	1	0			REV__ENST00000555400.1_1_14:53521153-53527951:-|nuORF	REV__ENST00000555400.1_1_14:53521153-53527951:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.7648315429688	2	564.764463	1127.51437	0.47145	0.00026626	-1.2804	-0.00072314	-0.80899	-0.00045689	564.7636946840034	76.918	0.46427	76.667	76.399	76.863	-0.25163					43	10	6	0	0	0	0.87795	1	9138	9138		55.504	9.532	1	1614300	+		18062	21129	12596	12622	20354	20354	270				-0.04428361537816272
FVAMRHLP	8	Unmodified	_FVAMRHLP_					0	0	0			REV__ENST00000455393.5_1_14:21955712-21956777:+|nuORF	REV__ENST00000455393.5_1_14:21955712-21956777:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2370300292969	2	485.768197	969.521842	-0.23767	-0.00011545	0.64554	0.00031358	0.40787	0.00019813	485.76856823980955	35.72	0.23003	35.508	35.354	35.584	-0.21246					7	5	2	0	0	0	0.027866	1	2706	2706		29.842	12.477	1	57676	+		18063	32074	12597	12623	20355	20355					0.035861588447801296
FVAMRHLP	8	Unmodified	_FVAMRHLP_					0	0	0			REV__ENST00000455393.5_1_14:21955712-21956777:+|nuORF	REV__ENST00000455393.5_1_14:21955712-21956777:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.768197	969.521842	-1.091	-0.00052998	3.3184	0.001612	2.2274	0.001082	485.7700310959428	35.851	0.33463	35.851	35.728	36.063	0	0.10502	0.0028775	NaN	21.702	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44203	+		18064	32074	12597	12623							0.035861588447801296
FVAMRHLP	8	Unmodified	_FVAMRHLP_					0	0	0			REV__ENST00000455393.5_1_14:21955712-21956777:+|nuORF	REV__ENST00000455393.5_1_14:21955712-21956777:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.768197	969.521842	-0.86459	-0.00041999	-1.5179	-0.00073735	-2.3825	-0.0011573	485.7698796850071	35.835	0.33731	35.879	35.699	36.037	0.04406	0.13335	-0.0018212	NaN	21.702	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69789	+		18065	32074	12597	12623							0.035861588447801296
FVAPGPEAQL	10	Unmodified	_FVAPGPEAQL_					0	0	0			REV__ENST00000456989.6_1_17:38347644-38348502:+|nuORF	REV__ENST00000456989.6_1_17:38347644-38348502:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7711791992188	2	514.7742	1027.53385	-0.14548	-7.4888E-05	-4.2059	-0.0021651	-4.3514	-0.00224	514.7720964758048	43.328	1.2248	43.358	43.01	44.235	0.030827					70	33	4	0	0	0	0.88896	1	4007	4007		54.776	5.3348	1	7353200	+		18066	32801	12598	12624	20356	20356					0.021180540689329064
FVARDFTVL	9	Unmodified	_FVARDFTVL_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000496420.5_1_7:92131189-92135604:-|nuORF;PEX1|p.G777A|1|0.39|ENSG00000127980|chr7:92501976-92501976|C/G|missense_variant	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8472900390625	2	534.297842	1066.58113	-0.74195	-0.00039642	-2.8779	-0.0015377	-3.6199	-0.0019341	534.2962563250079	47.448	0.88713	47.448	46.892	47.779	0					59	25	3	0	0	0	0.024541	1	4733	4733		16.473	0	1	889720			18067	4271	12599	12625	20357	20357					0.05050333339931967
FVARHKARI	9	Unmodified	_FVARHKARI_					0	0	0		nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1;nc|ENSG00000014123|O94874-3|UFL1;UFL1|p.S350Rfs*7|1|0.19|ENSG00000014123|chr6:96538702-96538702|C/-|frameshift_variant	nc|ENSG00000014123|O94874-2|UFL1	nc|ENSG00000014123|O94874-2|UFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.7870483398438	2	549.338167	1096.66178	0.12752	7.005E-05	-3.2102	-0.0017635	-3.0827	-0.0016935	549.336154126516	66.085	0.19424	66.085	65.95	66.145	0					7	4	2	0	0	0	0.024541	1	7863	7863		24.203	0	1	109020			18068	921	12600	12626	20358	20358					0.11731659173506159
FVAVPQRIPQ	10	Unmodified	_FVAVPQRIPQ_					0	0	0		nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.8137817382812	2	577.837665	1153.66078	-0.43858	-0.00025343	0.067314	3.8897E-05	-0.37126	-0.00021453	577.8375877345655	71.345	0.94148	71.083	70.779	71.72	-0.262					54	22	4	0	0	0	0.03519	1	8341	8341		42.396	19.354	1	1039700			18069	18746	12601	12627	20359	20359					0.09009400013951563
FVAVVKDTD	9	Unmodified	_FVAVVKDTD_					0	0	0			REV__ENSG00000181785|ENST00000641320|OR5AS1	REV__ENSG00000181785|ENST00000641320|OR5AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.7953186035156	2	497.266207	992.517862	-0.59819	-0.00029746	3.8652	0.0019221	3.2671	0.0016246	497.26804650965033	39.046	0.42121	38.823	38.652	39.073	-0.22311					16	11	2	0	0	0	0.024457	1	3243	3243		45.952	18.07	1	251280	+		18070	27424	12602	12628	20360	20360					0.02130347832053303
FVCHMYRERG	10	Unmodified	_FVCHMYRERG_					0	0	0		AGTRAP|p.Y107C|1|0.14|ENSG00000177674|chr1:11748566-11748566|A/G|missense_variant	AGTRAP|p.Y107C|1|0.14|ENSG00000177674|chr1:11748566-11748566|A/G|missense_variant	AGTRAP|p.Y107C|1|0.14|ENSG00000177674|chr1:11748566-11748566|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.58392333984375	3	433.20247	1296.58558	0.11043	4.7839E-05	3.4475	0.0014935	3.5579	0.0015413	433.20325149315704	47.035	0.41101	46.938	46.789	47.2	-0.096649					25	10	4	0	0	0	0.03519	1	4588	4588		21.686	3.8526	1	182260			18071	47	12603	12629	20361	20361					-0.050848487804614706
FVCKDCERSF	10	Unmodified	_FVCKDCERSF_					0	0	0		nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.8587341308594	3	411.851214	1232.53181	0.0037441	1.542E-06	-4.1966	-0.0017284	-4.1928	-0.0017268	411.84893964497775	30.33	0.20329	30.181	30.056	30.259	-0.14952					6	4	2	0	0	0	0.03519	1	1902	1902		53.089	3.0554	1	19070			18072	4438	12604	12630	20362	20362					-0.07515066002815729
FVCPLLLWTL	10	Unmodified	_FVCPLLLWTL_					0	0	0			REV__ENST00000469110.1_1_10:49635089-49642935:+|nuORF	REV__ENST00000469110.1_1_10:49635089-49642935:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5511474609375	3	402.231473	1203.67259	1.4369	0.00057796	-1.626	-0.00065404	-0.18914	-7.6079E-05	402.23094298353095	23.38	0.53811	23.189	23.034	23.572	-0.19117					32	12	3	0	0	0	0.03519	1	885	885		28.081	0	1	1925600	+		18073	33125	12605	12631	20363	20363					0.07889880712923514
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.2830200195312	2	557.282389	1112.55022	0.26446	0.00014738	-0.24743	-0.00013789	0.017024	9.4869E-06	557.2821439502909	58.075	0.9523	58.075	57.835	58.787	0					78	25	4	0	0	0	0.030064	5	6550	6550;6562;6573;6586;6599		141.52	67.265	1	13642000			18074	3421	12606	12632	20364;20365;20366;20367;20368	20364					-0.0015486476497699186
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.2822875976562	2	557.282389	1112.55022	-0.98479	-0.00054881	0.95022	0.00052954	-0.03457	-1.9266E-05	557.2828209973965	58.329	1.0182	58.147	57.888	58.906	-0.18277					75	27	4	0	0	0	0.016542	5	6570	6559;6570;6581;6595;6607		154.12	89.911	1	11188000			18075	3421	12606	12632	20369;20370;20371;20372;20373	20370					-0.0015486476497699186
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.2825927734375	2	557.282389	1112.55022	-0.1387	-7.7294E-05	0.16844	9.387E-05	0.029745	1.6576E-05	557.2823567912346	57.946	0.94832	58.037	57.797	58.745	0.091217					87	25	5	0	0	0	0.013924	6	6477	6444;6454;6466;6477;6491;6503		167.23	92.974	1	12702000			18076	3421	12606	12632	20374;20375;20376;20377;20378;20379	20377					-0.0015486476497699186
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.2833251953125	2	557.282389	1112.55022	-0.095616	-5.3285E-05	0.62049	0.00034579	0.52488	0.0002925	557.2825596445301	58.386	0.78079	58.208	57.932	58.712	-0.17775					43	18	4	0	0	0	0.079716	1	6409	6409		117.81	59.029	1	1997500			18077	3421	12606	12632	20380	20380					-0.0015486476497699186
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2809448242188	2	557.282389	1112.55022	-0.022582	-1.2584E-05	0.67781	0.00037773	0.65523	0.00036515	557.2824938760949	58.341	0.66496	58.151	57.913	58.578	-0.19018					36	16	3	0	0	0	0.14181	2	6404	6404;6416		101.25	48.316	1	1590900			18078	3421	12606	12632	20381;20382	20381					-0.0015486476497699186
FVDDYTVRV	9	Unmodified	_FVDDYTVRV_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.283203125	2	557.282389	1112.55022	0.35888	0.0002	-0.074127	-4.1309E-05	0.28475	0.00015869	557.2822018635069	58.444	0.66337	58.203	57.958	58.622	-0.24165					42	15	4	0	0	0	0.20652	2	6399	6399;6408		88.177	35.24	1	1934900			18079	3421	12606	12632	20383;20384	20383					-0.0015486476497699186
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	620.81396484375	2	620.814053	1239.61355	-0.81723	-0.00050735	0.72464	0.00044987	-0.092592	-5.7482E-05	620.8144349726982	55.681	1.5144	55.525	55.211	56.725	-0.15656					102	39	5	0	0	0	0.17599	4	5984	5984;5995;6007;6020		124.08	41.84	1	5060700			18080	4305	12607	12633	20385;20386;20387;20388	20385					0.0033307595228961873
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	620.814697265625	2	620.814053	1239.61355	-0.99023	-0.00061475	0.80894	0.0005022	-0.18129	-0.00011255	620.8144692664854	55.79	1.4207	55.574	55.237	56.658	-0.21607					94	37	5	0	0	0	0.055122	3	6019	5994;6005;6019		146.79	64.545	1	5037900			18081	4305	12607	12633	20389;20390;20391	20391					0.0033307595228961873
FVDKNNDLLY	10	Unmodified	_FVDKNNDLLY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	620.8136596679688	2	620.814053	1239.61355	-1.0008	-0.00062131	0.58207	0.00036136	-0.41873	-0.00025995	620.8143291876539	55.796	1.4358	55.58	55.234	56.67	-0.21551					100	37	5	0	0	0	0.097953	4	6007	5982;5993;6007;6019		136.27	43.073	1	4994900			18082	4305	12607	12633	20392;20393;20394;20395	20394					0.0033307595228961873
FVDLLSYY	8	Unmodified	_FVDLLSYY_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.25494384765625	2	510.257851	1018.50115	-0.51866	-0.00026465	-3.5697	-0.0018215	-4.0884	-0.0020861	510.25588435867513	91.722	1.0667	91.599	91.035	92.101	-0.12341					59	24	5	0	0	0	0.75307	1	11257	11257		62.978	2.6845	1	833390	+		18083	27243	12608	12634	20396	20396					-0.00736153053912858
FVDLLSYY	8	Unmodified	_FVDLLSYY_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.25543212890625	2	510.257851	1018.50115	0.11653	5.946E-05	-4.3849	-0.0022374	-4.2684	-0.002178	510.25555339134246	91.743	1.1503	91.603	91.023	92.173	-0.13942					65	26	5	0	0	0	0.56067	1	11241	11241		79.939	16.633	1	760350	+		18084	27243	12608	12634	20397	20397					-0.00736153053912858
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2744140625	2	534.274032	1066.53351	0.037049	1.9794E-05	-0.46867	-0.0002504	-0.43162	-0.0002306	534.2739678905402	77.418	1.0506	77.156	76.854	77.904	-0.26201					44	25	3	0	0	0	0.37611	2	9208	9196;9208		67.494	19.836	1	1526900			18085	1088	12609	12635	20398;20399	20399					0.0029063434908493946
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2738647460938	2	534.274032	1066.53351	0.41354	0.00022094	-0.4321	-0.00023086	-0.018562	-9.9171E-06	534.2737856425204	77.375	1.0395	77.132	76.913	77.952	-0.24232					42	25	3	0	0	0	0.28753	2	9215	9205;9215		77.318	18.536	1	1450700			18086	1088	12609	12635	20400;20401	20401					0.0029063434908493946
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2749633789062	2	534.274032	1066.53351	-0.75535	-0.00040357	0.46237	0.00024703	-0.29298	-0.00015653	534.274267269369	77.29	1.0828	77.128	76.825	77.908	-0.16196					48	25	3	0	0	0	0.5973	1	9195	9195		52.937	7.9145	1	1038300			18087	1088	12609	12635	20402	20402					0.0029063434908493946
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.274032	1066.53351	-0.11568	-6.1805E-05	5.6248	0.0030052	5.5091	0.0029434	534.2770165845766	76.99	0.37005	76.99	76.882	77.252	0	-0.11627	0.004985	NaN	77.318	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421070			18088	1088	12609	12635							0.0029063434908493946
FVDPLVTNY	9	Unmodified	_FVDPLVTNY_					0	0	0		ENST00000486825.6_1_1:40315918-40341739:-|nuORF;ENST00000462243.2_1_1:40318401-40323020:-|nuORF;nc|ENSG00000043514|Q9H3H1-4|TRIT1;ENSG00000043514|ENST00000316891|TRIT1	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	ENST00000486825.6_1_1:40315918-40341739:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.274032	1066.53351	-0.42358	-0.00022631	6.6757	0.0035667	6.2522	0.0033404	534.2774855137764	77.111	0.42212	77.124	76.939	77.361	0.013504	0.018238	0.006108	NaN	77.318	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416030			18089	1088	12609	12635							0.0029063434908493946
FVDRALIV	8	Unmodified	_FVDRALIV_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000469170.5_1_1:70687319-70696797:+|nuORF	ENSG00000116754|ENST00000370949|SRSF11	ENSG00000116754|ENST00000370949|SRSF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.8036804199219	2	466.781828	931.549102	-0.51491	-0.00024035	0.57136	0.0002667	0.056452	2.6351E-05	466.781807457084	83.78	0.77617	83.689	83.427	84.203	-0.090446					25	17	2	0	0	0	0.027866	1	10507	10507		20.482	3.7769	1	176420			18090	3575	12610	12636	20403	20403					0.08058965656800865
FVDRALIV	8	Unmodified	_FVDRALIV_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000469170.5_1_1:70687319-70696797:+|nuORF	ENSG00000116754|ENST00000370949|SRSF11	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.781828	931.549102	-0.85374	-0.00039851	0.74891	0.00034958	-0.10482	-4.8929E-05	466.78194446484184	83.657	0.64948	83.657	83.435	84.084	0	-0.016234	0.00030044	NaN	12.207	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162540			18091	3575	12610	12636							0.08058965656800865
FVDRALIV	8	Unmodified	_FVDRALIV_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11;ENST00000469170.5_1_1:70687319-70696797:+|nuORF	ENSG00000116754|ENST00000370949|SRSF11	ENSG00000116754|ENST00000370949|SRSF11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.781828	931.549102	-0.011193	-5.2248E-06	-0.059872	-2.7947E-05	-0.071065	-3.3172E-05	466.7816153556362	83.647	0.81934	83.674	83.3	84.119	0.02655	0.00037279	-0.00045461	NaN	12.207	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200630			18092	3575	12610	12636							0.08058965656800865
FVDSHLQTP	9	Unmodified	_FVDSHLQTP_					0	0	0		ENSG00000205329|ENST00000641740|OR6C3	ENSG00000205329|ENST00000641740|OR6C3	ENSG00000205329|ENST00000641740|OR6C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3019409179688	2	522.261456	1042.50836	-0.46081	-0.00024066	-3.5018	-0.0018289	-3.9626	-0.0020695	522.2601131173617	61.435	1.0638	61.435	60.656	61.72	0					65	27	3	0	0	0	0.024381	1	6998	6998		37.159	8.0096	1	433770			18093	10418	12611	12637	20404	20404					-0.011194204534831442
FVEFAAFYT	9	Unmodified	_FVEFAAFYT_					0	0	0			REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.332275390625	2	547.7633	1093.51205	-0.71633	-0.00039238	-0.62254	-0.000341	-1.3389	-0.00073338	548.265549695057	96.127	0.45009	96.127	95.864	96.314	0					13	9	2	0	0	0	0.024436	1	12251	12251		47.916	18.074	1	69403	+		18094	23273	12612	12638	20405	20405					-0.030967506796287125
FVEFAAFYT	9	Unmodified	_FVEFAAFYT_					0	0	0			REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3325805664062	2	547.7633	1093.51205	0.2224	0.00012182	-1.2688	-0.00069502	-1.0464	-0.0005732	548.2652421288926	96.11	0.44656	96.112	95.868	96.314	0.0020752					16	10	2	0	0	0	0.024381	1	12156	12156		55.504	27.622	1	132610	+		18095	23273	12612	12638	20406	20406					-0.030967506796287125
FVEFAAFYT	9	Unmodified	_FVEFAAFYT_					0	0	0			REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.7633	1093.51205	0.064786	3.5487E-05	-2.8461	-0.001559	-2.7813	-0.0015235	548.263458280712	96.135	0.80334	95.999	95.419	96.223	-0.1367	-0.080601	-0.0009824	NaN	55.504	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100820	+		18096	23273	12612	12638							-0.030967506796287125
FVEFTVKDD	9	Unmodified	_FVEFTVKDD_					0	0	0			REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.3026123046875	2	550.268947	1098.52334	-0.4969	-0.00027343	1.7904	0.00098518	1.2935	0.00071175	550.7706773238594	78.857	1.1164	78.876	78.4	79.516	0.018677					48	26	3	0	0	0	0.02435	1	9746	9746		42.396	0	1	204740	+		18097	27944	12613	12639	20407	20407					-0.021979733761327225
FVEGCVSS	8	Unmodified	_FVEGCVSS_					0	0	0			REV__ENSG00000223547|ENST00000439326|ZNF844	REV__ENSG00000223547|ENST00000439326|ZNF844	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2557373046875	2	414.183829	826.353105	0.22493	9.3164E-05	1.145	0.00047422	1.3699	0.00056739	414.1846478787639	96.088	1.1492	95.952	95.463	96.613	-0.13671					37	26	3	0	0	0	0.027866	1	11938	11938		42.474	26.001	1	63442	+		18098	28851	12614	12640	20408	20408					-0.06701787579390839
FVEKSKKAL	9	Unmodified	_FVEKSKKAL_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2794799804688	2	525.321317	1048.62808	0.74839	0.00039314	2.0689	0.0010868	2.8173	0.00148	525.3226181875483	87.161	0.33769	87.183	86.968	87.306	0.021263					9	7	2	0	0	0	0.024539	1	10870	10870		27.882	10.517	1	39122	+		18099	27410	12615	12641	20409	20409					0.1057119289109778
FVELTESLL	9	Unmodified	_FVELTESLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2969970703125	2	525.789515	1049.56448	-1.1516	-0.00060549	1.0516	0.00055291	-0.10001	-5.2584E-05	525.7899972700052	81.308	0.57228	81.308	81.057	81.63	0					22	13	3	0	0	0	0.024354	1	10115	10115		47.916	0	1	222640			18100	3505	12616	12642	20410	20410					0.041677876633457345
FVELTESLL	9	Unmodified	_FVELTESLL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.789515	1049.56448	-0.52608	-0.00027661	1.1253	0.00059168	0.59925	0.00031508	525.7900320554135	81.325	0.52902	81.349	81.248	81.777	0.023911	0.020295	3.3184E-05	NaN	38.806	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283360			18101	3505	12616	12642							0.041677876633457345
FVERLTVI	8	Unmodified	_FVERLTVI_					0	0	0			REV__nc|ENSG00000152520|Q58A45-4|PAN3	REV__nc|ENSG00000152520|Q58A45-4|PAN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7944641113281	2	488.794935	975.575317	-0.82116	-0.00040138	0.24127	0.00011793	-0.57989	-0.00028345	488.79466132475267	62.917	0.89745	62.678	62.451	63.349	-0.23926					38	22	3	0	0	0	0.62178	1	7314	7314		74.255	4.6274	1	4593400	+		18102	24849	12617	12643	20411	20411					0.08655234828268021
FVFAELIFA	9	Unmodified	_FVFAELIFA_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MSMS	OPSCC_40_ClassI_Rep-3	6	528.7901611328125	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.51	1	104.34	103.84	104.84	-0.16791								0	0	0	0.57861	1	12993	12993		42.474	5.3154	1		+		18103	27885	12618	12644	20412	20412					0.04360716596761449
FVFDNKVL	8	Unmodified	_FVFDNKVL_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.2716979980469	2	491.273835	980.533118	-0.85295	-0.00041903	-3.352	-0.0016468	-4.205	-0.0020658	491.27204604851664	31.114	0.90464	30.873	30.541	31.446	-0.24109					53	22	4	0	0	0	0.71063	2	2035	2035;2048		66.429	14.13	1	1654100			18104	1224	12619	12645	20413;20414	20413					0.04207259419899856
FVFDNKVL	8	Unmodified	_FVFDNKVL_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.2720642089844	2	491.273835	980.533118	-0.36039	-0.00017705	-3.9466	-0.0019388	-4.3069	-0.0021159	491.27179149496607	30.986	0.91002	30.801	30.49	31.4	-0.18452					54	22	5	0	0	0	0.71063	1	2015	2015		66.429	6.1353	1	1607200			18105	1224	12619	12645	20415	20415					0.04207259419899856
FVFDNKVL	8	Unmodified	_FVFDNKVL_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.27215576171875	2	491.273835	980.533118	-0.046587	-2.2887E-05	-4.3702	-0.002147	-4.4168	-0.0021699	491.27154530799555	31.061	0.93739	30.908	30.597	31.534	-0.15231					54	23	4	0	0	0	0.5947	2	2005	2005;2016		76.774	13.468	1	1739400			18106	1224	12619	12645	20416;20417	20416					0.04207259419899856
FVFDVWGVI	9	Unmodified	_FVFDVWGVI_					0	0	0		ENSG00000137960|ENST00000370759|GIPC2	ENSG00000137960|ENST00000370759|GIPC2	ENSG00000137960|ENST00000370759|GIPC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8410034179688	2	541.289485	1080.56442	-0.31231	-0.00016905	2.0326	0.0011002	1.7203	0.00093118	541.2904750181538	18.212	0.83672	18.08	17.663	18.499	-0.13147					28	16	2	0	0	0	0.024541	1	296	296		17.365	5.1581	1	239570			18107	5182	12620	12646	20418	20418					0.027358324540045942
FVFETPFTL	9	Unmodified	_FVFETPFTL_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.785888671875	2	550.786776	1099.559	0.43502	0.0002396	-0.32074	-0.00017666	0.11428	6.2942E-05	550.7863298500081	100.96	0.53914	100.84	100.65	101.19	-0.12576					28	13	3	0	0	0	0.049585	2	12542	12531;12542		128.86	67.889	1	311440			18108	4946	12621	12647	20419;20420	20420					0.013201088715504739
FVFETPFTL	9	Unmodified	_FVFETPFTL_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MSMS	OPSCC_40_ClassI_Rep-3	6	550.786865234375	2	550.786776	1099.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	100.83	100.33	101.33	-0.17178								0	0	0	0.092882	1	12523	12523		94.006	30.473	1				18109	4946	12621	12647	20421	20421					0.013201088715504739
FVFETPFTL	9	Unmodified	_FVFETPFTL_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.786776	1099.559	-0.26071	-0.0001436	1.024	0.00056402	0.76332	0.00042043	550.7866826303767	101.17	0.47019	101.17	100.95	101.42	0	0.12934	0.0010892	NaN	128.86	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99480			18110	4946	12621	12647							0.013201088715504739
FVFETPFTL	9	Unmodified	_FVFETPFTL_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.786776	1099.559	-0.56046	-0.0003087	1.4268	0.00078586	0.86633	0.00047716	550.7868470258579	101.13	0.51073	101.14	100.83	101.34	0.0090256	0.094974	0.0015329	NaN	128.86	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66255			18111	4946	12621	12647							0.013201088715504739
FVFETPFTL	9	Unmodified	_FVFETPFTL_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.786776	1099.559	-0.098136	-5.4052E-05	1.084	0.00059703	0.98583	0.00054298	550.7867968901004	101.2	0.51006	101.19	100.93	101.44	-0.0054474	0.15109	0.0011552	NaN	128.86	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120280			18112	4946	12621	12647							0.013201088715504739
FVFEVKGY	8	Unmodified	_FVFEVKGY_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3148193359375	2	494.760561	987.506569	-0.89192	-0.00044129	1.4108	0.00069803	0.51892	0.00025674	494.76085374880586	80.801	0.82118	80.649	80.133	80.954	-0.15168					30	19	2	0	0	0	0.027866	1	10014	10014		50.025	9.2464	1	140020	+		18113	20632	12622	12648	20422	20422					0.012315705285800504
FVFHVGIK	8	Unmodified	_FVFHVGIK_					0	0	0			REV__nc|ENSG00000103245|Q9H6Q4-3|CIAO3	REV__nc|ENSG00000103245|Q9H6Q4-3|CIAO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7501525878906	2	473.779088	945.543623	-0.095591	-4.5289E-05	-1.3569	-0.00064289	-1.4525	-0.00068818	473.77831776327895	29.287	1.681	29.365	28.121	29.802	0.078346					83	41	4	0	0	0	0.027866	1	1554	1554		29.842	12.477	1	713120	+		18114	21368	12623	12649	20423	20423					0.06867286865008282
FVFHVGIK	8	Unmodified	_FVFHVGIK_					0	0	0			REV__nc|ENSG00000103245|Q9H6Q4-3|CIAO3	REV__nc|ENSG00000103245|Q9H6Q4-3|CIAO3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.779088	945.543623	-0.55243	-0.00026173	-0.9838	-0.0004661	-1.5362	-0.00072783	473.77858900276436	29.467	0.63144	29.467	29.223	29.855	0	0.040856	0.00019337	NaN	21.702	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413620	+		18115	21368	12623	12649							0.06867286865008282
FVFHVGIK	8	Unmodified	_FVFHVGIK_					0	0	0			REV__nc|ENSG00000103245|Q9H6Q4-3|CIAO3	REV__nc|ENSG00000103245|Q9H6Q4-3|CIAO3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.779088	945.543623	-0.063001	-2.9849E-05	-1.2357	-0.00058546	-1.2987	-0.00061531	473.7784368713687	29.442	1.1035	29.446	29.055	30.158	0.0031357	0.019805	-4.5343E-05	NaN	21.702	46	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614240	+		18116	21368	12623	12649							0.06867286865008282
FVFIALLTI	9	Unmodified	_FVFIALLTI_					0	0	0			REV__nc|ENSG00000170175|P11230-2|CHRNB1	REV__nc|ENSG00000170175|P11230-2|CHRNB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8187866210938	2	518.825704	1035.63685	0.053814	2.792E-05	-3.3822	-0.0017548	-3.3284	-0.0017268	518.8238594672378	80.507	0.77889	80.361	80.076	80.855	-0.146					32	18	2	0	0	0	0.024354	1	9624	9624		47.916	14.4	1	1059800	+		18117	26439	12624	12650	20424	20424					0.12046166527557034
FVFIVTLN	8	Unmodified	_FVFIVTLN_					0	0	0			REV__ENSG00000203737|ENST00000367685|GPR52	REV__ENSG00000203737|ENST00000367685|GPR52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.3063049316406	2	476.778754	951.542954	0.020944	9.9858E-06	0.29884	0.00014248	0.31979	0.00015247	476.77891006956025	64.433	0.39156	64.198	63.943	64.334	-0.2345					13	9	2	0	0	0	0.027866	1	7307	7307		49.442	0	1	93838	+		18118	28543	12625	12651	20425	20425					0.06524447425294966
FVFLCMFV	8	Unmodified	_FVFLCMFV_					0	0	0			REV__ENST00000295598.9_1_1:116947247-116947373:+|nuORF	REV__ENST00000295598.9_1_1:116947247-116947373:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2670593261719	2	503.25046	1004.48637	0.52093	0.00026216	-0.92883	-0.00046744	-0.40791	-0.00020528	503.2494530770305	71.324	0.50171	71.324	71.026	71.528	0					15	12	2	0	0	0	0.027866	1	8646	8646		43.626	18.176	1	74911	+		18119	29981	12626	12652	20426	20426					-0.01569639727233607
FVFLSPNL	8	Unmodified	_FVFLSPNL_					0	0	0		ENST00000554157.5_1_14:20757788-20760378:-|nuORF	ENST00000554157.5_1_14:20757788-20760378:-|nuORF	ENST00000554157.5_1_14:20757788-20760378:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.7649230957031	2	468.763104	935.511654	0.87712	0.00041116	2.5262	0.0011842	3.4034	0.0015954	468.76427924775425	72.313	1.6079	72.031	71.695	73.303	-0.28124					100	40	4	0	0	0	0.42327	1	8774	8774		94.006	3.2298	1	8879100			18120	16650	12627	12653	20427	20427					0.04131874391191559
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7997436523438	2	517.799686	1033.58482	-0.16646	-8.6191E-05	-0.28211	-0.00014608	-0.44857	-0.00023227	517.7995230466181	104.69	1.9891	104.69	104.24	106.23	0					121	63	4	0	0	0	0.015333	10	13429	13411;13419;13429;13438;13447;13457;13465;13473;13492;13503		160.17	80.231	1	9188300			18121	2655	12628	12654	20428;20429;20430;20431;20432;20433;20434;20435;20436;20437	20430					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.799560546875	2	517.799686	1033.58482	-0.08686	-4.4976E-05	-0.40935	-0.00021196	-0.49621	-0.00025694	517.7994678778375	104.64	1.8672	104.64	104.27	106.14	0.00096893					131	61	5	0	0	0	0.016588	12	13408	13371;13381;13390;13399;13408;13417;13424;13431;13438;13446;13455;13471		153.88	64.035	1	8425800			18122	2655	12628	12654	20438;20439;20440;20441;20442;20443;20444;20445;20446;20447;20448;20449	20442					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.799560546875	2	517.799686	1033.58482	-0.31133	-0.00016121	-0.084203	-4.36E-05	-0.39553	-0.00020481	517.7996284133957	104.73	2.026	104.73	104.18	106.21	-0.0015945					122	64	4	0	0	0	0.016588	9	13362	13341;13352;13362;13370;13378;13389;13398;13407;13430		153.88	73.945	1	8883900			18123	2655	12628	12654	20450;20451;20452;20453;20454;20455;20456;20457;20458	20452					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7998657226562	2	517.799686	1033.58482	0.0077095	3.992E-06	-0.58737	-0.00030414	-0.57966	-0.00030015	517.7994017600831	104.52	2.8727	104.4	104.08	106.95	-0.1256					229	93	5	0	0	0	0.015333	18	12988	12978;12988;13000;13012;13024;13032;13041;13049;13058;13067;13076;13083;13093;13106;13118;13129;13140;13158		160.17	80.231	1	27214000			18124	2655	12628	12654	20459;20460;20461;20462;20463;20464;20465;20466;20467;20468;20469;20470;20471;20472;20473;20474;20475;20476	20460					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.799560546875	2	517.799686	1033.58482	-0.43133	-0.00022335	-0.18303	-9.4772E-05	-0.61436	-0.00031812	517.79963984843	104.54	2.3033	104.41	104.06	106.36	-0.12927					189	82	5	0	0	0	0.015333	15	13008	12999;13008;13020;13032;13043;13054;13062;13069;13085;13092;13100;13109;13121;13129;13135		160.17	85.098	1	24685000			18125	2655	12628	12654	20477;20478;20479;20480;20481;20482;20483;20484;20485;20486;20487;20488;20489;20490;20491	20478					0.06937003113830542
FVFPGELLL	9	Unmodified	_FVFPGELLL_					0	0	0		SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7994384765625	2	517.799686	1033.58482	0.49012	0.00025378	-1.0658	-0.00055189	-0.57572	-0.00029811	517.7991702290866	104.61	2.3703	104.45	104.08	106.46	-0.16484					233	88	5	0	0	0	0.013308	15	13002	12981;12990;13002;13014;13025;13034;13043;13050;13059;13068;13075;13083;13102;13114;13124		177.57	97.628	1	26826000			18126	2655	12628	12654	20492;20493;20494;20495;20496;20497;20498;20499;20500;20501;20502;20503;20504;20505;20506	20494					0.06937003113830542
FVFRLQGEI	9	Unmodified	_FVFRLQGEI_					0	0	0		TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7874755859375	2	554.811116	1107.60768	-0.23175	-0.00012858	-2.1932	-0.0012168	-2.4249	-0.0013454	555.3118793404462	82.226	0.33606	82.252	82.065	82.401	0.025711					11	7	2	0	0	0	0.024487	1	10170	10170		40.573	10.069	1	96527			18127	38104	12629	12655	20507	20507					0.05818022231278519
FVFVLVWLIF	10	Unmodified	_FVFVLVWLIF_					0	0	0			REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	641.3828735351562	2	641.883553	1281.75255	1.1008	0.00070659	-2.2869	-0.0014679	-1.1861	-0.00076134	641.8818200654002	105.72	0.56815	105.72	105.35	105.92	-0.0013123					32	20	2	0	0	0	0.03519	1	13519	13519		26.796	0	1	192210	+		18128	34464	12630	12656	20508	20508					0.1229469037839408
FVFYEPYSC	9	Unmodified	_FVFYEPYSC_					0	0	0			REV__ENSG00000155897|ENST00000286355|ADCY8	REV__ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.7748413085938	2	577.746793	1153.47903	-0.47017	-0.00027164	3.4912	0.002017	3.021	0.0017454	577.7488085892862	56.254	0.3611	56.098	55.894	56.255	-0.15655					13	8	2	0	0	0	0.024541	1	6102	6102		12.207	0	1	120110	+		18129	25036	12631	12657	20509	20509					-0.09156700793982964
FVGAALEIIL	10	Unmodified	_FVGAALEIIL_					0	0	0		nc|ENSG00000105983|Q8WVP7-3|LMBR1;ENSG00000105983|ENST00000353442|LMBR1	nc|ENSG00000105983|Q8WVP7-3|LMBR1	nc|ENSG00000105983|Q8WVP7-3|LMBR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.8023071289062	2	523.318243	1044.62193	-0.12768	-6.6818E-05	0.13159	6.8864E-05	0.0039107	2.0466E-06	523.3179504852028	96.778	0.74177	96.617	96.209	96.951	-0.16106					34	16	3	0	0	0	0.03519	1	11977	11977		60.972	7.6205	1	164610			18130	2743	12632	12658	20510	20510					0.10140674659578508
FVGERFRR	8	Unmodified	_FVGERFRR_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2757568359375	2	533.798875	1065.5832	-0.23587	-0.00012591	-0.54909	-0.0002931	-0.78496	-0.00041901	533.798639491284	52.115	0.55457	51.931	51.598	52.153	-0.18404					25	14	2	0	0	0	0.027866	1	5407	5407		37.028	5.4987	1	666990			18131	8388	12633	12659	20511	20511					0.05302806868417065
FVGFADGNLA	10	Unmodified	_FVGFADGNLA_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7492370605469	2	505.750724	1009.4869	-0.72083	-0.00036456	-3.3723	-0.0017055	-4.0931	-0.0020701	505.74890201263025	26.724	0.94355	26.805	26.414	27.357	0.081291					71	23	6	0	0	0	0.82838	1	1330	1330		58.782	7.4465	1	2170600	+		18132	25715	12634	12660	20512	20512					-0.01746805482207492
FVGGAVSSPL	10	Unmodified	_FVGGAVSSPL_					0	0	0		ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.72589111328125	2	467.255643	932.496732	-0.59254	-0.00027687	4.1737	0.0019502	3.5812	0.0016733	467.25737748974467	43.628	0.42722	43.391	43.136	43.563	-0.23737					21	11	2	0	0	0	0.03519	1	3995	3995		51.335	14.307	1	245110			18133	9073	12635	12661	20513	20513					0.027783825231949777
FVGGIAQIIA	10	Unmodified	_FVGGIAQIIA_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.7805480957031	2	494.794935	987.575317	0.39101	0.00019347	-1.1236	-0.00055595	-0.73258	-0.00036247	494.79410401428487	89.51	0.54884	89.489	89.241	89.79	-0.021645					21	12	2	0	0	0	0.03519	1	11243	11243		35.618	4.0885	1	345160			18134	8217	12636	12662	20514	20514					0.08103234828274708
FVGKLETL	8	Unmodified	_FVGKLETL_					0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7144470214844	2	453.768386	905.522219	-0.61027	-0.00027692	-0.79088	-0.00035888	-1.4012	-0.0006358	453.76789362734684	22.74	0.37038	22.814	22.653	23.024	0.073954					11	7	2	0	0	0	0.027866	1	773	773		35.618	11.416	1	22251			18135	4996	12637	12663	20515	20515					0.06567857045627079
FVGLHMHGF	9	Unmodified	_FVGLHMHGF_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7329711914062	2	522.75783	1043.50111	-0.025959	-1.357E-05	1.5741	0.00082289	1.5482	0.00080932	522.7585843063944	38.746	0.48918	38.52	38.282	38.771	-0.2257					29	12	4	0	0	0	0.024289	1	3205	3205		49.211	38.946	1	306220			18136	7399	12638	12664	20516	20516					-0.018904315348891032
FVGQLIQNV	9	Unmodified	_FVGQLIQNV_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.8056945800781	2	509.290017	1016.56548	0.038972	1.9848E-05	-0.41344	-0.00021056	-0.37447	-0.00019071	509.28965863341665	57.423	0.80691	57.221	56.855	57.662	-0.20209					39	17	3	0	0	0	0.024506	1	6337	6337		16.473	0	1	1452000			18137	8936	12639	12665	20517	20517					0.05786046822890967
FVGQLIQNV	9	Unmodified	_FVGQLIQNV_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.290017	1016.56548	-0.61317	-0.00031228	0.096577	4.9186E-05	-0.5166	-0.0002631	509.28987578022793	57.367	0.9302	57.2	56.676	57.606	-0.1672	-0.0066311	0.00024308	NaN	16.473	48	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1757500			18138	8936	12639	12665							0.05786046822890967
FVGQLIQNV	9	Unmodified	_FVGQLIQNV_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.290017	1016.56548	-0.57012	-0.00029036	-0.086057	-4.3828E-05	-0.65618	-0.00033419	509.28996729249224	57.432	0.82098	57.198	56.843	57.664	-0.23363	-0.007995	5.7048E-05	NaN	16.473	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1236400			18139	8936	12639	12665							0.05786046822890967
FVGRVIFTLN	10	Unmodified	_FVGRVIFTLN_					0	0	0		nc|ENSG00000101892|Q9UN42-2|ATP1B4;ENSG00000101892|ENST00000218008|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.787841796875	2	583.340041	1164.66553	-0.94881	-0.00055348	0.060092	3.5054E-05	-0.88872	-0.00051842	583.3398538016286	66.193	0.43396	65.947	65.731	66.165	-0.24573					15	10	2	0	0	0	0.03519	1	7546	7546		31.53	0	1	129090			18140	2357	12640	12666	20518	20518					0.08978284156728478
FVGSVKQLQ	9	Unmodified	_FVGSVKQLQ_					0	0	0			REV__ENSG00000132669|ENST00000255006|RIN2	REV__ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.76373291015625	2	503.290017	1004.56548	0.00096289	4.8462E-07	-1.1476	-0.00057758	-1.1466	-0.0005771	503.2907768795436	34.999	0.20395	34.783	34.63	34.833	-0.21556					6	4	2	0	0	0	0.020546	1	2620	2620		74.255	0	1	51957	+		18141	23305	12641	12667	20519	20519					0.06338046822895649
FVGSVKQLQ	9	Unmodified	_FVGSVKQLQ_					0	0	0			REV__ENSG00000132669|ENST00000255006|RIN2	REV__ENSG00000132669|ENST00000255006|RIN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	503.290017	1004.56548	-0.62807	-0.0003161	3.9453	0.0019857	3.3173	0.0016695	503.2918369495791	35.039	0.70503	35.039	34.826	35.531	0	0.1604	0.00028948	NaN	74.255	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405370	+		18142	23305	12641	12667							0.06338046822895649
FVGSVKQLQ	9	Unmodified	_FVGSVKQLQ_					0	0	0			REV__ENSG00000132669|ENST00000255006|RIN2	REV__ENSG00000132669|ENST00000255006|RIN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.290017	1004.56548	-0.78719	-0.00039619	3.6903	0.0018573	2.9031	0.0014611	503.2915739913921	34.765	0.79559	34.743	34.551	35.347	-0.021767	-0.13622	3.2753E-05	NaN	74.255	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324130	+		18143	23305	12641	12667							0.06338046822895649
FVGSVKQLQ	9	Unmodified	_FVGSVKQLQ_					0	0	0			REV__ENSG00000132669|ENST00000255006|RIN2	REV__ENSG00000132669|ENST00000255006|RIN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.290017	1004.56548	-0.52699	-0.00026523	3.8373	0.0019313	3.3103	0.001666	503.2917738164773	34.901	0.6292	34.951	34.682	35.311	0.050255	0.07179	0.00018073	NaN	74.255	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338830	+		18144	23305	12641	12667							0.06338046822895649
FVGVMCLIKA	10	Unmodified	_FVGVMCLIKA_					0	0	0			REV__nc|ENSG00000141873|Q9BRY0-2|SLC39A3	REV__nc|ENSG00000141873|Q9BRY0-2|SLC39A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.288330078125	2	540.800848	1079.58714	-0.51154	-0.00027664	4.0165	0.0021721	3.5049	0.0018955	540.8032664278707	41.033	0.5379	40.805	40.544	41.082	-0.2278					16	13	2	0	0	0	0.03519	1	3571	3571		37.159	1.9584	1	185350	+		18145	24123	12642	12668	20520	20520					0.050533922556041944
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8155517578125	2	559.815867	1117.61718	-0.54512	-0.00030517	-0.034507	-1.9318E-05	-0.57963	-0.00032449	559.8157653628313	80.904	2.796	80.904	79.911	82.707	0					244	67	6	0	0	0	0.33184	4	10077	10053;10065;10077;10102		71.378	25.406	1	11331000			18146	456;1424	12643	12669	20521;20522;20523;20524	20523					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.816162109375	2	559.815867	1117.61718	-0.92953	-0.00052036	0.35389	0.00019811	-0.57564	-0.00032225	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.64155	2	10036	10036;10059		50.025	10.772	1	11139000			18147	456;1424	12643	12669	20525;20526	20525					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8155517578125	2	559.815867	1117.61718	-0.85269	-0.00047735	0.22501	0.00012596	-0.62768	-0.00035139	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.24299	3	9994	9960;9982;9994		83.287	24.505	1	10426000			18148	456;1424	12643	12669	20527;20528;20529	20529					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.81591796875	2	559.815867	1117.61718	0.050072	2.8031E-05	-0.59321	-0.00033209	-0.54314	-0.00030406	559.8155046600118	80.867	2.2167	80.629	80.287	82.504	-0.23784					212	52	6	0	0	0	0.33184	6	9721	9676;9686;9698;9709;9721;9807		71.378	20.569	1	31546000			18149	456;1424	12643	12669	20530;20531;20532;20533;20534;20535	20534					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8155517578125	2	559.815867	1117.61718	0.27362	0.00015318	-0.94312	-0.00052797	-0.6695	-0.00037479	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.33184	4	9717	9694;9717;9729;9741		71.378	9.2705	1	35108000			18150	456;1424	12643	12669	20536;20537;20538;20539	20537					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.81591796875	2	559.815867	1117.61718	-0.4095	-0.00022924	-0.24322	-0.00013616	-0.65272	-0.0003654	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.33184	4	9690	9666;9690;9800;9825		71.378	20.042	1	31806000			18151	456;1424	12643	12669	20540;20541;20542;20543	20541					0.06307790516780187
FVHGLVIL	8	Unmodified	_FVHGLVIL_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7595520019531	2	449.281463	896.548374	-0.41111	-0.00018471	-4.3178	-0.0019399	-4.7289	-0.0021246	449.27945074465225	44.928	1.164	44.928	44.281	45.445	0					84	33	4	0	0	0	0.027866	1	4311	4311		54.895	11.269	1	3027200	+		18152	25074	12644	12670	20544	20544					0.09596171007763132
FVHIWTTI	8	Unmodified	_FVHIWTTI_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3023986816406	2	508.781828	1015.5491	-0.68011	-0.00034603	-3.9016	-0.0019851	-4.5818	-0.0023311	509.28149131757067	56.487	0.33276	56.322	56.165	56.497	-0.16431					20	8	4	0	0	0	0.027866	1	6255	6255		28.254	17.389	1	239110	+		18153	25033	12645	12671	20545	20545					0.04194965656790828
FVHIWTTI	8	Unmodified	_FVHIWTTI_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.781828	1015.5491	-0.49221	-0.00025043	-7.4925	-0.003812	-7.9847	-0.0040625	508.7775476891762	56.406	0.25704	56.406	56.314	56.571	0	0.05742	-0.0026129	NaN	19.36	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136220	+		18154	25033	12645	12671							0.04194965656790828
FVHLRGSL	8	Unmodified	_FVHLRGSL_					0	0	0			REV__ENST00000290524.8_2_1:151313240-151313396:-|nuORF	REV__ENST00000290524.8_2_1:151313240-151313396:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7718200683594	2	464.771794	927.529036	-0.23214	-0.00010789	-0.10166	-4.7247E-05	-0.3338	-0.00015514	464.7715734392333	34.447	1.2651	34.442	34.261	35.526	-0.0045624					63	32	4	0	0	0	0.81662	1	2566	2566		57.811	0	1	1592400	+		18155	29933	12646	12672	20546	20546					0.06237214716861672
FVHLYNNLPP	10	Unmodified	_FVHLYNNLPP_					0	0	0			REV__ENSG00000172469|ENST00000358812|MANEA	REV__ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	608.3110961914062	2	607.321848	1212.62914	-0.035653	-2.1653E-05	-1.8824	-0.0011432	-1.9181	-0.0011649	607.8211452962635	67.729	0.66704	67.473	67.236	67.903	-0.25516					24	15	2	0	0	0	0.03519	1	7794	7794		23.042	3.6825	1	89956	+		18156	26674	12647	12673	20547	20547					0.03133407259974774
FVHPPDSRS	9	Unmodified	_FVHPPDSRS_					0	0	0		ENST00000413184.6_1_11:61196684-61196954:-|nuORF	ENST00000413184.6_1_11:61196684-61196954:-|nuORF	ENST00000413184.6_1_11:61196684-61196954:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7513427734375	2	521.259248	1040.50394	-0.14689	-7.6568E-05	-3.0949	-0.0016132	-3.2418	-0.0016898	521.7579311195543	42.525	0.34291	42.293	42.079	42.422	-0.23186					12	8	2	0	0	0	0.024457	1	3799	3799		29.15	5.6269	1	170430			18157	13837	12648	12674	20548	20548					-0.014688848763853457
FVHPPNASLP	10	Unmodified	_FVHPPNASLP_					0	0	0		ENSG00000149452|ENST00000336232|SLC22A8;nc|ENSG00000149452|Q8TCC7-2|SLC22A8	ENSG00000149452|ENST00000336232|SLC22A8	ENSG00000149452|ENST00000336232|SLC22A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7916870117188	2	539.787641	1077.56073	-0.47956	-0.00025886	3.4062	0.0018386	2.9266	0.0015797	539.789242175704	59.289	0.95638	59.045	58.62	59.576	-0.24339					41	23	2	0	0	0	0.03519	1	6515	6515		49.442	5.3247	1	1048100			18158	6089	12649	12675	20549	20549					0.02505162680131434
FVHQAIHTI	9	Unmodified	_FVHQAIHTI_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.33984375	2	533.295633	1064.57671	0.52811	0.00028164	-3.9346	-0.0020983	-3.4065	-0.0018167	533.7950861865555	98.337	0.74416	98.2	98.026	98.77	-0.13625					19	16	2	0	0	0	0.024412	1	12159	12159		31.955	0	1	42704			18159	2736	12650	12676	20550	20550					0.04700868917052503
FVHVAVNI	8	Unmodified	_FVHVAVNI_					0	0	0			REV__ENSG00000118271|ENST00000237014|TTR	REV__ENSG00000118271|ENST00000237014|TTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7595520019531	2	449.760895	897.507237	-0.53805	-0.00024199	-4.4706	-0.0020107	-5.0087	-0.0022527	449.75889799941183	44.584	1.398	44.584	44.215	45.613	0					110	40	4	0	0	0	0.63936	2	4311	4285;4311		72.62	9.3137	1	13254000	+		18160	22396	12651	12677	20551;20552	20552					0.05438409968269298
FVHVAVNI	8	Unmodified	_FVHVAVNI_					0	0	0			REV__ENSG00000118271|ENST00000237014|TTR	REV__ENSG00000118271|ENST00000237014|TTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7589111328125	2	449.760895	897.507237	-0.81742	-0.00036764	-4.0727	-0.0018317	-4.8901	-0.0021994	449.7590709348939	44.762	1.1944	44.614	44.288	45.483	-0.1488					107	34	4	0	0	0	0.63936	2	4279	4279;4291		72.62	6.7225	1	13532000	+		18161	22396	12651	12677	20553;20554	20553					0.05438409968269298
FVHVNTSAVL	10	Unmodified	_FVHVNTSAVL_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8018798828125	2	543.800749	1085.58694	-0.79178	-0.00043057	3.0441	0.0016554	2.2523	0.0012248	543.802360796175	56.983	1.1587	56.819	56.423	57.582	-0.16432					67	31	3	0	0	0	0.71272	1	6358	6358		66.429	7.6473	1	8991000			18162	4445	12652	12678	20555	20555					0.04757431851635374
FVIAELVNV	9	Unmodified	_FVIAELVNV_					0	0	0		ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.27447509765625	2	502.294768	1002.57498	-0.53061	-0.00026652	-4.2623	-0.0021409	-4.7929	-0.0024075	502.2911711207509	48.749	0.5706	48.596	48.329	48.9	-0.15276					22	15	2	0	0	0	0.023181	1	4981	4981		71.296	0	1	311330			18163	11012	12653	12679	20556	20556					0.07379815108424737
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.777099609375	2	538.808574	1075.60259	-0.12262	-6.6069E-05	-0.58953	-0.00031765	-0.71215	-0.00038371	538.808029100342	57.333	0.50552	57.131	56.926	57.431	-0.20208					23	13	2	0	0	0	0.024389	1	6264	6264		51.193	20.875	1	373900			18164	7803	12654	12680	20557	20557					0.06781718368665679
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.776611328125	2	538.808574	1075.60259	-1.2674	-0.00068291	0.74845	0.00040327	-0.519	-0.00027964	538.8089961882399	57.465	0.59766	57.232	57.026	57.624	-0.23363					24	15	2	0	0	0	0.024313	1	6258	6258		60.118	10.085	1	380400			18165	7803	12654	12680	20558	20558					0.06781718368665679
FVIFVEICI	9	Unmodified	_FVIFVEICI_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|67	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|67	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3251342773438	2	541.801371	1081.58819	-1.1988	-0.00064952	0.54889	0.00029739	-0.64993	-0.00035213	541.8015464662261	45.244	0.9183	45.095	44.662	45.581	-0.1488					53	26	3	0	0	0	0.024436	1	4425	4425		30.504	0	1	3398900	+		18166	19334	12655	12681	20559	20559					0.050659298961363675
FVIKKHEL	8	Unmodified	_FVIKKHEL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.31060791015625	2	507.310752	1012.60695	-0.0085723	-4.3488E-06	-0.61781	-0.00031342	-0.62638	-0.00031777	507.31027372325445	31.761	1.0366	31.521	31.259	32.296	-0.2394					70	24	4	0	0	0	0.53523	2	2147	2137;2147		82.305	15.876	1	2689500			18167	10961	12656	12682	20560;20561	20561					0.10115227582218722
FVIKKHEL	8	Unmodified	_FVIKKHEL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3104248046875	2	507.310752	1012.60695	-0.16843	-8.5448E-05	-0.40725	-0.0002066	-0.57569	-0.00029205	507.3103531967286	31.729	1.2953	31.544	31.208	32.504	-0.18503					77	30	4	0	0	0	0.6536	1	2125	2125		71.296	14.575	1	2286300			18168	10961	12656	12682	20562	20562					0.10115227582218722
FVIKKHEL	8	Unmodified	_FVIKKHEL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.310546875	2	507.310752	1012.60695	-0.59273	-0.0003007	-0.046822	-2.3753E-05	-0.63956	-0.00032445	507.31054975234616	31.742	1.1033	31.585	31.3	32.404	-0.15728					65	26	4	0	0	0	0.44658	3	2118	2118;2130;2140		90.777	19.481	1	2460300			18169	10961	12656	12682	20563;20564;20565	20563					0.10115227582218722
FVIKKHEL	8	Unmodified	_FVIKKHEL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.310752	1012.60695	-0.60351	-0.00030617	-4.4621	-0.0022637	-5.0656	-0.0025699	507.3084235052752	31.78	0.67007	31.78	31.63	32.3	0	0.15587	-0.003142	NaN	90.777	30	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	784630			18170	10961	12656	12682							0.10115227582218722
FVIKKHEL	8	Unmodified	_FVIKKHEL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.310752	1012.60695	-0.41256	-0.0002093	-4.3766	-0.0022203	-4.7891	-0.0024296	507.30838248071495	31.703	0.51858	31.715	31.545	32.063	0.011799	0.090173	-0.0030552	NaN	90.777	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789260			18171	10961	12656	12682							0.10115227582218722
FVIKKHEL	8	Unmodified	_FVIKKHEL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.310752	1012.60695	-0.34874	-0.00017692	-4.2379	-0.0021499	-4.5867	-0.0023269	507.3084273177193	31.533	0.64658	31.602	31.445	32.092	0.06896	-0.023079	-0.0029145	NaN	90.777	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	703820			18172	10961	12656	12682							0.10115227582218722
FVILQDIKN	9	Unmodified	_FVILQDIKN_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165283203125	2	545.318774	1088.623	-0.65894	-0.00035933	-3.4724	-0.0018936	-4.1314	-0.0022529	545.3167551725024	101.4	1.0525	101.4	101.12	102.17	0					35	23	2	0	0	0	0.67687	2	12984	12984;12996		47.657	13.485	1	1388500	+		18173	20191	12657	12683	20566;20567	20566					0.08222889028479585
FVIQALIQV	9	Unmodified	_FVIQALIQV_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF;nc|ENSG00000204764|Q9H2T7-2|RANBP17;ENST00000523727.1_1_5:170308890-170323149:+|nuORF	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7625122070312	2	515.81841	1029.62227	-0.23293	-0.00012015	-1.5406	-0.00079468	-1.7735	-0.00091483	515.8170797862717	67.534	0.92761	67.246	66.665	67.593	-0.28834					45	22	4	0	0	0	0.018368	1	8049	8049		128.86	43.502	1	1231900			18174	10376	12658	12684	20568	20568					0.10864094379394373
FVIRNIVEA	9	Unmodified	_FVIRNIVEA_					0	0	0		ENSG00000197728|ENST00000646449|RPS26;nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENSG00000197728|ENST00000646449|RPS26;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENSG00000197728|ENST00000646449|RPS26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8115234375	2	530.811116	1059.60768	-0.24209	-0.00012851	-0.37356	-0.00019829	-0.61566	-0.0003268	530.810877113207	61.651	0.88495	61.438	61.167	62.052	-0.21375					53	21	4	0	0	0	0.56934	1	6903	6903		54.776	10.66	1	1722300			18175	10041;14467	12659	12685	20569	20569					0.08026022231297247
FVISNPDLV	9	Unmodified	_FVISNPDLV_					0	0	0		ENST00000502981.2_1_4:53382-60051:+|nuORF;ENSG00000272602|ENST00000610261|ZNF595	ENST00000502981.2_1_4:53382-60051:+|nuORF	ENST00000502981.2_1_4:53382-60051:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.273681640625	2	502.276575	1002.5386	-0.34479	-0.00017318	-4.4142	-0.0022172	-4.759	-0.0023903	502.2743666614946	48.637	1.8074	48.637	48.277	50.084	0					145	50	5	0	0	0	0.2508	1	5045	5045		82.241	20.133	1	33137000			18176	11015	12660	12686	20570	20570					0.0374293821170113
FVITVIDN	8	Unmodified	_FVITVIDN_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1;REV__ENSG00000116991|ENST00000674635|SIPA1L2;REV__nc|ENSG00000197555|O43166-3|SIPA1L1;REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2609558105469	2	460.758018	919.501483	-0.60832	-0.00028029	1.7881	0.0008239	1.1798	0.00054361	460.75890424493747	28.092	0.51434	28.092	27.804	28.318	0					16	12	2	0	0	0	0.027866	1	1617	1617		30.504	11.144	1	46396	+		18177	28740;22317;28316;23702	12661	12687	20571	20571					0.03851266665958519
FVIVAVNLI	9	Unmodified	_FVIVAVNLI_					0	0	0		ENSG00000153294|ENST00000283303|ADGRF4	ENSG00000153294|ENST00000283303|ADGRF4	ENSG00000153294|ENST00000283303|ADGRF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.30096435546875	2	494.315503	986.616454	-0.0044843	-2.2167E-06	-1.523	-0.00075283	-1.5275	-0.00075505	494.3150177024294	96.185	0.45009	96.185	95.864	96.314	0					15	10	2	0	0	0	0.024386	1	12219	12219		18.324	7.4589	1	484110			18178	6340	12662	12688	20572	20572					0.12260995867757174
FVIVIWIF	8	Unmodified	_FVIVIWIF_					0	0	0		ENST00000481133.1_1_1:52930767-52933858:-|nuORF	ENST00000481133.1_1_1:52930767-52933858:-|nuORF	ENST00000481133.1_1_1:52930767-52933858:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7771606445312	2	518.815139	1035.61573	0.28036	0.00014546	-2.0933	-0.001086	-1.813	-0.00094059	518.8138172833051	79.436	0.41879	79.285	79.11	79.529	-0.15051					11	9	2	0	0	0	0.027866	1	9519	9519		24.504	0	1	26633			18179	15222	12663	12689	20573	20573					0.09934201218698036
FVIWIVEL	8	Unmodified	_FVIWIVEL_					0	0	0			REV__ENST00000313117.10_2_2:38970876-38971032:-|nuORF	REV__ENST00000313117.10_2_2:38970876-38971032:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8033752441406	2	509.802229	1017.5899	0.52857	0.00026947	2.3866	0.0012167	2.9152	0.0014862	509.8032727891544	98.163	1.089	98.161	97.813	98.902	-0.0020752					57	25	4	0	0	0	1.0017	1	12481	12481		37.028	1.8278	1	775880	+		18180	30228	12664	12690	20574	20574					0.08181306976428004
FVIWIVKP	8	Unmodified	_FVIWIVKP_					0	0	0		ENST00000525353.5_1_11:85361339-85366664:+|nuORF	ENST00000525353.5_1_11:85361339-85366664:+|nuORF	ENST00000525353.5_1_11:85361339-85366664:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7952880859375	2	501.312764	1000.61097	-0.54362	-0.00027253	-0.79768	-0.00039989	-1.3413	-0.00067241	501.31295301972557	52.482	0.31327	52.363	52.086	52.4	-0.11876					13	7	3	0	0	0	0.027866	1	5424	5424		20.482	0	1	81709			18181	16091	12665	12691	20575	20575					0.11069317075941854
FVKAKLEN	8	Unmodified	_FVKAKLEN_					0	0	0			REV__nc|ENSG00000167705|Q96NA2-2|RILP	REV__nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.24945068359375	2	474.779285	947.544017	0.26115	0.00012399	0.95337	0.00045264	1.2145	0.00057663	474.7794583868758	49.137	1.1341	48.984	48.682	49.816	-0.15277					74	30	4	0	0	0	0.027866	1	5115	5115		21.96	0	1	1515900	+		18182	26184	12666	12692	20576	20576					0.06814661794192034
FVKALAKEL	9	Unmodified	_FVKALAKEL_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7850341796875	2	509.81841	1017.62227	-0.13454	-6.859E-05	-0.76088	-0.00038791	-0.89542	-0.0004565	509.8178572757769	47.419	0.49075	47.225	46.959	47.45	-0.19387					25	12	3	0	0	0	0.024535	1	4591	4591		18.324	4.5491	1	308100			18183	1092	12667	12693	20577	20577					0.11416094379399055
FVKDHAKF	8	Unmodified	_FVKDHAKF_					0	0	0			REV__ENST00000444459.1_1_3:57264773-57269619:+|nuORF	REV__ENST00000444459.1_1_3:57264773-57269619:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.2712707519531	2	496.271627	990.528701	-0.21862	-0.0001085	-0.76316	-0.00037874	-0.98178	-0.00048723	496.2709209434651	38.83	0.88683	38.604	38.246	39.132	-0.2257					62	23	4	0	0	0	0.89627	1	3209	3209		51.335	8.9393	1	3782000	+		18184	32590	12668	12694	20578	20578					0.03305794996992972
FVKDKIFAV	9	Unmodified	_FVKDKIFAV_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2757568359375	2	533.81841	1065.62227	-0.31181	-0.00016645	-0.20347	-0.00010861	-0.51528	-0.00027507	533.8183600819144	52.14	0.57243	51.956	51.741	52.314	-0.18404					32	14	3	0	0	0	0.024495	1	5407	5407		42.396	11.892	1	575560			18185	3931	12669	12695	20579	20579					0.09208094379414433
FVKEPEPLEVL	11	Unmodified	_FVKEPEPLEVL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.9128112792969	3	433.911345	1298.7122	0.59914	0.00025997	2.8267	0.0012265	3.4258	0.0014865	433.9125825213623	21.01	1.6537	21.079	20.514	22.167	0.068918					79	33	5	0	0	0	0.99689	1	575	575		37.508	1.1905	1	1031900			18186	6479	12670	12696	20580	20580					0.07479679197354017
FVKEPPVLI	9	Unmodified	_FVKEPPVLI_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2;nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	ENSG00000086967|ENST00000357701|MYBPC2;nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MSMS	OPSCC_39_ClassI_Rep-1	1	521.3187255859375	2	521.320786	1040.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.983	1	64.983	64.483	65.483	0								0	0	0	0.17474	1	7675	7675		76.847	5.5509	1				18187	4810;1828	12671	12697	20581	20581					0.10832978522194026
FVKGCENCSH	10	Unmodified	_FVKGCENCSH_					0	0	0			REV__ENSG00000198633|ENST00000433050|ZNF534	REV__ENSG00000198633|ENST00000433050|ZNF534	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.3145141601562	2	562.236601	1122.45865	-0.93098	-0.00052343	2.8529	0.001604	1.922	0.0010806	562.238056257344	21.56	0.47694	21.56	21.342	21.819	0					16	9	3	0	0	0	0.03519	1	697	697		27.047	2.8446	1	37516	+		18188	28442	12672	12698	20582	20582					-0.09768194725438661
FVKGELKKN	9	Unmodified	_FVKGELKKN_					0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8170776367188	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.80003	1	10773	10773		39.253	2.8061	1	5249700	+		18189	27415	12673	12699	20583	20583					0.09498308748356976
FVKGELKKN	9	Unmodified	_FVKGELKKN_					0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8167114257812	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.80003	1	10809	10809		39.253	1.4413	1	4521600	+		18190	27415	12673	12699	20584	20584					0.09498308748356976
FVKGLFCI	8	Unmodified	_FVKGLFCI_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|316|3|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|3;chr4:99420793-99426577|128|12.3|0.16|6.26|-|1|TE_info:L1HS,L1HS_dup456,L1,LINE,donor,+,99426577,99427074|ADH7,None|3;chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|48;chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|44;chr15:53523322-53540662|353|34.83|0.17|7.69|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|51;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|57	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|316|3|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|316|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7509765625	2	463.762049	925.509546	-0.16001	-7.4208E-05	0.7371	0.00034184	0.57708	0.00026763	463.7622233535738	49.824	0.21952	49.824	49.694	49.913	0					8	5	2	0	0	0	0.027866	1	5168	5168		37.028	5.0736	1	86401			18191	284	12674	12700	20585	20585					0.04381122381732894
FVKHVLSHKI	10	Unmodified	_FVKHVLSHKI_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.366943359375	2	604.369133	1206.72371	-0.44133	-0.00026673	-3.3918	-0.0020499	-3.8331	-0.0023166	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.0508	1	13214	13214		39.253	16.673	1	5077600	+		18192	20658	12675	12701	20586	20586					0.12861965801971564
FVKIYITLT	9	Unmodified	_FVKIYITLT_					0	0	0		nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	nc|ENSG00000116161|Q9HB71-3|CACYBP	nc|ENSG00000116161|Q9HB71-3|CACYBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3028564453125	2	549.333893	1096.65323	-0.6087	-0.00033438	-4.3669	-0.0023989	-4.9756	-0.0027333	549.3326369223845	78.888	0.3331	78.696	78.591	78.924	-0.1921					13	7	2	0	0	0	0.024511	1	9753	9753		32.812	23.63	1	61682			18193	3527	12676	12702	20587	20587					0.108772476936565
FVKKLLTCNGV	11	Unmodified	_FVKKLLTCNGV_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3560791015625	2	611.354834	1220.69511	-0.81332	-0.00049722	2.9276	0.0017898	2.1143	0.0012926	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.0292	1	12068	12068		30.318	1.1477	1	11166000			18194	3357	12677	12703	20588	20588					0.09359480110515506
FVKKMKIG	8	Unmodified	_FVKKMKIG_					0	0	0		ENST00000291232.4_2_22:42318247-42318586:-|nuORF	ENST00000291232.4_2_22:42318247-42318586:-|nuORF	ENST00000291232.4_2_22:42318247-42318586:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7799072265625	2	475.796423	949.578294	0.64504	0.00030691	3.1211	0.001485	3.7662	0.0017919	475.7976282074121	33.992	0.59356	33.992	33.777	34.371	0					26	14	2	0	0	0	0.027866	1	2499	2499		8.8223	0.59103	1	221020			18195	11792	12678	12704	20589	20589					0.10148786681440924
FVKLAKSK	8	Unmodified	_FVKLAKSK_					0	0	0			REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9	REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.2221374511719	2	460.80002	919.585488	-0.086243	-3.9741E-05	0.11885	5.4768E-05	0.032611	1.5027E-05	460.79992982972726	41.76	1.4589	41.637	41.385	42.844	-0.12299					79	38	4	0	0	0	0.027866	1	3883	3883		23.042	0	1	1377400	+		18196	27796	12679	12705	20590	20590					0.12247842553517785
FVKMEHKL	8	Unmodified	_FVKMEHKL_					0	0	0			REV__ZNRF3-AP1B1|4|fusion	REV__ZNRF3-AP1B1|4|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3138427734375	2	516.288963	1030.56337	-0.2335	-0.00012055	-1.4677	-0.00075774	-1.7012	-0.00087829	516.2880848170009	98.041	0.25054	98.041	97.94	98.19	0					7	5	2	0	0	0	0.027866	1	12506	12506		45.952	19.156	1	67359	+		18197	21078	12680	12706	20591	20591					0.04931294813445675
FVKQTARATR	10	Unmodified	_FVKQTARATR_					0	0	0			REV__ENST00000406386.7_1_22:38170154-38170496:+|nuORF	REV__ENST00000406386.7_1_22:38170154-38170496:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3433227539062	2	589.343646	1176.67274	-0.46523	-0.00027418	-0.41075	-0.00024208	-0.87599	-0.00051626	589.3432591363344	95.498	0.94806	95.361	95.112	96.06	-0.13689					59	21	4	0	0	0	1.0816	1	11786	11786		35.152	0.97948	1	845610	+		18198	31919	12681	12707	20592	20592					0.09147016757128767
FVKQTLEGSM	10	Unmodified	_FVKQTLEGSM_					0	0	0		SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.8457641601562	2	570.291899	1138.56925	-0.53858	-0.00030715	2.6186	0.0014934	2.0801	0.0011862	570.2933877662234	38.653	0.33905	38.554	38.398	38.737	-0.098751					11	8	2	0	0	0	0.03519	1	3233	3233		32.812	4.9302	1	72087			18199	37987	12682	12708	20593	20593					0.0055034853444340115
FVKRGAVIL	9	Unmodified	_FVKRGAVIL_					0	0	0			REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.76654052734375	2	501.826569	1001.63859	0.19771	9.9216E-05	1.118	0.00056104	1.3157	0.00066026	502.32950344229045	58.935	0.122	58.754	58.669	58.791	-0.18133					4	2	2	0	0	0	0.024517	1	6488	6488		26.796	1.3459	1	33010	+		18200	20701	12683	12709	20594	20594					0.1378322033619952
FVKRGRSGLN	10	Unmodified	_FVKRGRSGLN_					0	0	0			REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3304443359375	2	567.330539	1132.64652	-1.643	-0.00093215	0.013669	7.7548E-06	-1.6294	-0.00092439	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0616	1	11398	11398		37.812	0	1	14057000	+		18201	28539	12684	12710	20595	20595					0.08550747585695717
FVKRGRSGLN	10	Unmodified	_FVKRGRSGLN_					0	0	0			REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3303833007812	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.0393	1	11358	11358		40.778	6.6056	1	13648000	+		18202	28539	12684	12710	20596	20596					0.08550747585695717
FVKRRPGRPR	10	Unmodified	_FVKRRPGRPR_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.8922729492188	2	634.894172	1267.77379	-0.88559	-0.00056226	-1.8396	-0.0011679	-2.7252	-0.0017302	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.1267	1	12988	12988		29.15	0	1	1402800			18203	3553	12685	12711	20597	20597					0.15061513250498137
FVKWPSAR	8	Unmodified	_FVKWPSAR_					0	0	0			REV__ENST00000461124.1_1_10:3821588-3821675:-|nuORF	REV__ENST00000461124.1_1_10:3821588-3821675:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.78076171875	2	495.779619	989.544686	-0.36264	-0.00017979	3.1786	0.0015759	2.816	0.0013961	495.7811327557606	27.977	1.774	28.058	27.208	28.982	0.081293					74	44	2	0	0	0	0.93274	1	1549	1549		47.916	7.1374	1	1781800	+		18204	32869	12686	12712	20598	20598					0.049495012338979905
FVLAICVF	8	Unmodified	_FVLAICVF_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2749328613281	2	456.2566	910.498647	-0.7012	-0.00031993	1.386	0.00063237	0.6848	0.00031244	456.25705826126756	27.192	1.0175	27.273	26.629	27.646	0.081291					40	26	2	0	0	0	0.027866	1	1446	1446		24.504	0	1	284740	+		18205	25831	12687	12713	20599	20599					0.03981720007448075
FVLAKKAIT	9	Unmodified	_FVLAKKAIT_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2513122558594	2	495.820953	989.627353	-0.025689	-1.2737E-05	0.34926	0.00017317	0.32357	0.00016043	495.8210076589156	60.93	0.52396	60.93	60.656	61.18	0					32	13	3	0	0	0	0.024541	1	7066	7066		17.365	0	1	520070			18206	8112	12688	12714	20600	20600					0.13212398242023937
FVLAKKAITA	10	Unmodified	_FVLAKKAITA_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;nc|ENSG00000171109|Q8IWA4-2|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.8173828125	2	531.33951	1060.66447	-0.64674	-0.00034364	4.0819	0.0021689	3.4351	0.0018252	531.3415681289221	89.118	0.97074	88.99	88.659	89.63	-0.12774					44	22	3	0	0	0	0.03519	1	10866	10866		14.137	0	1	542850			18207	8112	12689	12715	20601	20601					0.13656069787793967
FVLCKLDQV	9	Unmodified	_FVLCKLDQV_					0	0	0			REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF	REV__ENST00000544850.5_1_12:10758876-10761762:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7984619140625	2	532.794078	1063.5736	0.11788	6.2807E-05	-2.2514	-0.0011995	-2.1335	-0.0011367	533.2947069985082	99.048	0.75572	99.045	98.767	99.523	-0.0038834					22	16	2	0	0	0	0.024323	1	12579	12579		44.117	13.613	1	44502	+		18208	21898	12690	12716	20602	20602					0.04435857748012495
FVLDLSPL	8	Unmodified	_FVLDLSPL_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24761962890625	2	452.262936	902.51132	-0.17896	-8.0936E-05	3.271	0.0014794	3.0921	0.0013984	452.2651246332115	33.373	0.5679	33.373	33.287	33.855	0					31	15	3	0	0	0	0.027866	1	2411	2411		33.516	10.473	1	534110	+		18209	23887	12691	12717	20603	20603					0.056164546713375785
FVLELGVSLI	10	Unmodified	_FVLELGVSLI_					0	0	0		ENST00000352171.11_1_1:52299824-52305908:-|nuORF	ENST00000352171.11_1_1:52299824-52305908:-|nuORF	ENST00000352171.11_1_1:52299824-52305908:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.7926025390625	2	545.33135	1088.64815	-1.0461	-0.00057047	1.7295	0.00094316	0.68342	0.00037269	545.8346651265888	46.729	0.85356	46.576	46.342	47.196	-0.15301					30	22	2	0	0	0	0.03519	1	4715	4715		27.882	13.017	1	221030			18210	12601	12692	12718	20604	20604					0.10736943831057033
FVLFARKW	8	Unmodified	_FVLFARKW_					0	0	0			REV__ENST00000562846.1_1_16:67595386-67595647:-|nuORF	REV__ENST00000562846.1_1_16:67595386-67595647:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.8214111328125	2	533.813462	1065.61237	-0.67759	-0.00036171	-4.4206	-0.0023598	-5.0982	-0.0027215	533.810978297556	69.056	1.1511	69.071	68.683	69.834	0.015129					76	29	4	0	0	0	0.027866	1	8327	8327		28.254	1.4582	1	2094800	+		18211	35206	12693	12719	20605	20605					0.08218951164690225
FVLFPPALA	9	Unmodified	_FVLFPPALA_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7904968261719	2	487.789121	973.56369	0.37956	0.00018514	2.6849	0.0013097	3.0645	0.0014948	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.93795	1	10246	10246		29.842	1.9593	1	2659000			18212	10253	12694	12720	20606	20606					0.0758503780493811
FVLGEFPLL	9	Unmodified	_FVLGEFPLL_					0	0	0		ENST00000524877.5_1_11:61717864-61722837:+|nuORF;ENST00000533521.5_1_11:61719272-61722837:+|nuORF	ENST00000524877.5_1_11:61717864-61722837:+|nuORF	ENST00000524877.5_1_11:61717864-61722837:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	517.799560546875	2	517.799686	1033.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.46	1	107.3	106.8	107.8	-0.15772								0	0	0	0.41814	1	13338	13338		60.294	2.4827	1				18213	16071	12695	12721	20607	20607					0.06937003113807805
FVLGGEPAPGI	11	Unmodified	_FVLGGEPAPGI_					0	0	0			REV__ENSG00000204099|ENST00000407683|NEU4	REV__ENSG00000204099|ENST00000407683|NEU4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.7913208007812	2	528.78985	1055.56515	0.12268	6.4873E-05	1.3986	0.00073957	1.5213	0.00080444	528.7904229333961	104.71	0.69019	104.71	104.43	105.12	-0.0015945					44	21	3	0	0	0	0.95124	1	13345	13345		47.657	12.039	1	375930	+		18214	28566	12696	12722	20608	20608					0.03958627103043
FVLGLGLTPP	10	Unmodified	_FVLGLGLTPP_					0	0	0		ENSG00000214274|ENST00000397990|ANG	ENSG00000214274|ENST00000397990|ANG	ENSG00000214274|ENST00000397990|ANG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7679138183594	2	507.305136	1012.59572	-1.9386	-0.00098345	-1.0324	-0.00052374	-2.971	-0.0015072	507.3039711664429	60.346	0.5621	60.425	60.011	60.574	0.078888					25	14	3	0	0	0	0.03519	1	6875	6875		31.955	1.4512	1	270780			18215	10549	12697	12723	20609	20609					0.08992405488072563
FVLGPHEAF	9	Unmodified	_FVLGPHEAF_					0	0	0			REV__sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	REV__sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2877502441406	2	508.763635	1015.51272	-0.58385	-0.00029704	4.0173	0.0020438	3.4334	0.0017468	508.76579457214626	52.41	0.58828	52.291	52.011	52.599	-0.11875					25	14	2	0	0	0	0.024258	1	5486	5486		44.531	0	1	191900	+		18216	37525	12698	12724	20610	20610					0.005580887600899587
FVLGRYVL	8	Unmodified	_FVLGRYVL_					0	0	0			REV__ENST00000508141.1_1_4:103571829-103571865:-|nuORF	REV__ENST00000508141.1_1_4:103571829-103571865:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7901306152344	2	483.792195	965.569838	-0.30835	-0.00014918	-3.9994	-0.0019349	-4.3077	-0.0020841	483.7901322210408	47.573	1.1627	47.573	47.216	48.378	0					69	34	3	0	0	0	1.0017	1	4799	4799		37.028	4.2161	1	5595000	+		18217	34059	12699	12725	20611	20611					0.08567556036473434
FVLHTIVR	8	Unmodified	_FVLHTIVR_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.8009033203125	2	492.803094	983.591636	-1.1104	-0.0005472	-3.8311	-0.001888	-4.9415	-0.0024352	492.80119252309186	36.024	1.4739	35.981	35.488	36.962	-0.042454					96	39	5	0	0	0	0.93274	1	2795	2795		47.916	5.5195	1	18457000			18218	6067	12700	12726	20612	20612					0.09918360785036384
FVLIFPDLI	9	Unmodified	_FVLIFPDLI_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7904052734375	2	538.823161	1075.63177	-0.8358	-0.00045035	-4.3701	-0.0023547	-5.2059	-0.0028051	538.8205721246195	66.147	0.37636	66.177	65.89	66.267	0.030106					15	9	2	0	0	0	0.024381	1	7777	7777		29.15	0	1	807140	+		18219	23850	12701	12727	20613	20613					0.09697862664938839
FVLKFDLED	9	Unmodified	_FVLKFDLED_					0	0	0			REV__ENSG00000072736|ENST00000346183|NFATC3	REV__ENSG00000072736|ENST00000346183|NFATC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.3107299804688	2	563.294965	1124.57538	0.1266	7.1311E-05	0.48318	0.00027218	0.60978	0.00034349	563.2953776022449	87.707	0.32603	87.672	87.405	87.731	-0.035355					10	7	2	0	0	0	0.024209	1	10985	10985		66.429	43.85	1	86892	+		18220	20478	12702	12728	20614	20614					0.0180719003762988
FVLKFDLED	9	Unmodified	_FVLKFDLED_					0	0	0			REV__ENSG00000072736|ENST00000346183|NFATC3	REV__ENSG00000072736|ENST00000346183|NFATC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.3106079101562	2	563.294965	1124.57538	0.44476	0.00025053	0.33461	0.00018848	0.77936	0.00043901	563.2951536909367	87.669	0.4397	87.687	87.431	87.87	0.018555					13	10	2	0	0	0	0.022832	1	10951	10951		93.195	16.421	1	69937	+		18221	20478	12702	12728	20615	20615					0.0180719003762988
FVLKHKVAQ	9	Unmodified	_FVLKHKVAQ_					0	0	0		ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2590942382812	2	535.329476	1068.6444	-0.80651	-0.00043175	0.78556	0.00042053	-0.020949	-1.1215E-05	535.3297374109679	53.788	0.7315	53.591	53.126	53.857	-0.19739					59	21	4	0	0	0	0.024541	1	5603	5603		17.365	0.89182	1	1218000			18222	3388	12703	12729	20616	20616					0.11282318847838724
FVLKKDKK	8	Unmodified	_FVLKKDKK_					0	0	0		nc|ENSG00000065548|Q8WU90-2|ZC3H15;ENSG00000065548|ENST00000337859|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.81060791015625	2	503.326402	1004.63825	-0.2786	-0.00014023	-0.64772	-0.00032602	-0.92633	-0.00046624	503.32571608345046	69.051	1.0281	69.051	68.6	69.629	0					70	26	4	0	0	0	0.027866	1	8321	8321		42.396	24.072	1	1633100			18223	1309	12704	12730	20617	20617					0.13611800616320124
FVLKTFFP	8	Unmodified	_FVLKTFFP_					0	0	0		ENSG00000124196|ENST00000373003|GTSF1L	ENSG00000124196|ENST00000373003|GTSF1L	ENSG00000124196|ENST00000373003|GTSF1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.80047607421875	2	499.789121	997.56369	-0.5814	-0.00029058	2.4569	0.0012279	1.8755	0.00093735	499.79000365489645	28.721	0.50738	28.717	28.54	29.047	-0.0042019					18	11	2	0	0	0	0.027866	1	1681	1681		35.201	0	1	103960			18224	4021	12705	12731	20618	20618					0.06481037804951484
FVLLFLIF	8	Unmodified	_FVLLFLIF_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27191162109375	2	506.317515	1010.62048	-0.43084	-0.00021814	3.023	0.0015306	2.5921	0.0013124	506.3189865652932	35.595	0.68474	35.639	35.42	36.105	0.04406					43	17	4	0	0	0	0.027866	1	2732	2732		24.504	14.319	1	1238400	+		18225	21560	12706	12732	20619	20619					0.11559085361466259
FVLLKHML	8	Unmodified	_FVLLKHML_					0	0	0			REV__ENST00000482853.5_1_6:41001618-41002768:-|nuORF	REV__ENST00000482853.5_1_6:41001618-41002768:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.28204345703125	2	500.804248	999.593944	-0.096462	-4.8309E-05	-3.3411	-0.0016732	-3.4375	-0.0017215	501.30482489808895	97.195	0.97788	97.195	96.571	97.549	0					46	21	3	0	0	0	0.027866	1	12383	12383		44.531	20.328	1	232570	+		18226	22777	12707	12733	20620	20620					0.09413073198493294
FVLLQLDFYY	10	Unmodified	_FVLLQLDFYY_					0	0	0			REV__ENSG00000134910|ENST00000392708|STT3A	REV__ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.3000793457031	3	440.900668	1319.68018	0.76569	0.00033759	3.2852	0.0014484	4.0509	0.001786	440.902535149894	35.913	0.40092	35.715	35.542	35.943	-0.19829					13	11	2	0	0	0	0.03519	1	2761	2761		27.047	14.614	1	197840	+		18227	23496	12708	12734	20621	20621					0.033123115141961534
FVLLSMVLI	9	Unmodified	_FVLLSMVLI_					0	0	0		ENSG00000156959|ENST00000287585|LHFPL4	ENSG00000156959|ENST00000287585|LHFPL4	ENSG00000156959|ENST00000287585|LHFPL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.8189697265625	2	517.819564	1033.62458	-1.1532	-0.00059714	0.79553	0.00041194	-0.35765	-0.0001852	517.8198004944113	91.792	1.1119	91.792	91.425	92.537	0					81	26	5	0	0	0	0.92825	1	11616	11616		30.504	3.8107	1	1448700			18228	6562	12709	12735	20622	20622					0.10910806792890071
FVLMLLVPI	9	Unmodified	_FVLMLLVPI_					0	0	0			REV__nc|ENSG00000028116|Q86Y07-4|VRK2	REV__nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7320556640625	2	522.829932	1043.64531	-0.80758	-0.00042223	0.46548	0.00024337	-0.3421	-0.00017886	522.8301786480284	38.165	0.43433	37.986	37.701	38.136	-0.17929					20	12	2	0	0	0	0.024475	1	3146	3146		29.842	8.1392	1	274240	+		18229	20032	12710	12736	20623	20623					0.1252339717252653
FVLMLLVPI	9	Unmodified	_FVLMLLVPI_					0	0	0			REV__nc|ENSG00000028116|Q86Y07-4|VRK2	REV__nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.829932	1043.64531	-1.0403	-0.00054388	-0.66476	-0.00034756	-1.705	-0.00089144	522.8295262933218	38.19	0.27688	38.107	38.017	38.294	-0.082516	0.069186	-0.0010829	NaN	29.842	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72255	+		18230	20032	12710	12736							0.1252339717252653
FVLNFIFTI	9	Unmodified	_FVLNFIFTI_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2999877929688	2	557.320786	1112.62702	-0.16165	-9.0091E-05	-3.4466	-0.0019209	-3.6083	-0.002011	557.3187948523059	68.012	1.3017	67.724	66.992	68.293	-0.28834					71	32	3	0	0	0	0.024021	1	8161	8161		79.451	37.055	1	870620	+		18231	25846	12711	12737	20624	20624					0.0752097852218867
FVLPACAHL	9	Unmodified	_FVLPACAHL_					0	0	0			REV__ENST00000302538.9_1_17:908779-908890:-|nuORF	REV__ENST00000302538.9_1_17:908779-908890:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7639465332031	2	485.762581	969.510608	0.12569	6.1055E-05	2.9464	0.0014313	3.0721	0.0014923	485.764199663561	99.145	0.8424	99.145	98.779	99.621	0					33	18	3	0	0	0	0.65391	1	12660	12660		49.211	5.5847	1	125810	+		18232	30080	12712	12738	20625	20625					0.02463336750633971
FVLPCKIK	8	Unmodified	_FVLPCKIK_					0	0	0			REV__ENST00000489309.5_1_2:71297584-71297857:+|nuORF	REV__ENST00000489309.5_1_2:71297584-71297857:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.24945068359375	2	474.290974	946.567395	0.33149	0.00015722	0.51914	0.00024622	0.85063	0.00040345	474.2913358816912	49.269	0.95146	49.117	48.864	49.816	-0.15277					32	25	2	0	0	0	0.027866	1	5115	5115		40.573	5.3719	1	102890	+		18233	33665	12713	12739	20626	20626					0.09197384307151424
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7896423339844	2	500.789318	999.564084	-0.077844	-3.8984E-05	0.20594	0.00010313	0.12809	6.4148E-05	500.7894322392297	92.989	1.9898	92.989	92.454	94.444	0					129	47	5	0	0	0	0.013805	8	11781	11771;11781;11792;11804;11817;11830;11843;11854		200.96	113.2	1	14047000			18234	9103	12714	12740	20627;20628;20629;20630;20631;20632;20633;20634	20628					0.06428412734157973
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7897644042969	2	500.789318	999.564084	-0.47298	-0.00023686	0.38796	0.00019429	-0.085012	-4.2573E-05	500.7894789339738	92.93	2.1645	92.926	92.479	94.643	-0.0041962					122	51	5	0	0	0	0.015087	6	11788	11736;11751;11763;11776;11788;11802		200.96	107.76	1	13092000			18235	9103	12714	12740	20635;20636;20637;20638;20639;20640	20639					0.06428412734157973
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.78961181640625	2	500.789318	999.564084	-0.046524	-2.3299E-05	0.073172	3.6644E-05	0.026648	1.3345E-05	500.78936388475444	92.984	2.5841	92.992	92.341	94.926	0.0077286					148	61	5	0	0	0	0.013805	9	11699	11690;11699;11710;11722;11735;11748;11762;11774;11792		219.18	139.47	1	14730000			18236	9103	12714	12740	20641;20642;20643;20644;20645;20646;20647;20648;20649	20642					0.06428412734157973
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7892150878906	2	500.789318	999.564084	-1.5425	-0.00077247	1.6006	0.00080158	0.058124	2.9108E-05	500.79000283251924	92.86	0.84206	92.717	92.246	93.088	-0.14356					61	19	4	0	0	0	0.016838	4	11408	11397;11408;11420;11432		152.63	100.33	1	2737300			18237	9103	12714	12740	20650;20651;20652;20653	20651					0.06428412734157973
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.78936767578125	2	500.789318	999.564084	-0.082645	-4.1388E-05	-0.02396	-1.1999E-05	-0.1066	-5.3387E-05	500.7892033830993	92.897	1.4341	92.774	92.062	93.496	-0.12242					66	19	5	0	0	0	0.034181	4	11428	11418;11428;11441;11454		138.24	60.925	1	2835100			18238	9103	12714	12740	20654;20655;20656;20657	20655					0.06428412734157973
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7892761230469	2	500.789318	999.564084	-0.27287	-0.00013665	0.10251	5.1338E-05	-0.17036	-8.5312E-05	500.78930299641326	92.973	2.0439	92.829	92.169	94.212	-0.1441					59	16	5	0	0	0	0.013805	5	11407	11397;11407;11419;11431;11444		167.82	100.33	1	2917900			18239	9103	12714	12740	20658;20659;20660;20661;20662	20659					0.06428412734157973
FVLQLFLF	8	Unmodified	_FVLQLFLF_					0	0	0		ENSG00000177108|ENST00000319374|ZDHHC22	ENSG00000177108|ENST00000319374|ZDHHC22	ENSG00000177108|ENST00000319374|ZDHHC22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.79296875	2	513.804771	1025.59499	0.12979	6.6687E-05	-4.3569	-0.0022386	-4.2271	-0.0021719	513.8024816468384	71.896	0.47566	71.62	71.394	71.87	-0.2751					20	11	2	0	0	0	0.027866	1	8416	8416		46.766	5.9883	1	253490			18240	8710	12715	12741	20663	20663					0.08321610839016103
FVLRAQQL	8	Unmodified	_FVLRAQQL_					0	0	0		nc|ENSG00000163219|P42331-2|ARHGAP25;nc|ENSG00000163219|P42331-5|ARHGAP25;nc|ENSG00000163219|P42331-3|ARHGAP25;nc|ENSG00000163219|P42331-6|ARHGAP25;nc|ENSG00000163219|P42331|ARHGAP25;ENSG00000163219|ENST00000409202|ARHGAP25	nc|ENSG00000163219|P42331-2|ARHGAP25	nc|ENSG00000163219|P42331-2|ARHGAP25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7906799316406	2	487.792727	973.5709	-0.96209	-0.0004693	-3.3876	-0.0016524	-4.3497	-0.0021217	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.75307	1	10349	10349		62.978	15.063	1	1891000			18241	18443	12716	12742	20664	20664					0.08305770405377189
FVLRGDQLF	9	Unmodified	_FVLRGDQLF_					0	0	0		ENSG00000128805|ENST00000249601|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-2|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.8270874023438	2	547.803291	1093.59203	0.50193	0.00027496	4.4457	0.0024354	4.9476	0.0027103	548.3067176854299	95.484	0.30672	95.362	95.247	95.554	-0.12251					9	6	2	0	0	0	0.024477	1	11797	11797		35.618	3.6634	1	25207			18242	4314	12717	12743	20665	20665					0.04897735714234841
FVLRSQTQ	8	Unmodified	_FVLRSQTQ_					0	0	0			REV__ENST00000417038.1_1_2:175352160-175352238:+|nuORF	REV__ENST00000417038.1_1_2:175352160-175352238:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.79052734375	2	489.771991	977.529429	-0.021444	-1.0502E-05	4.4755	0.002192	4.4541	0.0021815	489.77394612988127	22.357	0.50902	22.168	21.911	22.42	-0.18894					15	10	2	0	0	0	0.027866	1	804	804		23.042	10.083	1	52861	+		18243	32090	12718	12744	20666	20666					0.03976589646049433
FVLSEKIKP	9	Unmodified	_FVLSEKIKP_					0	0	0		YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	YTHDC1|p.E235Gfs*125|1|0.12|ENSG00000083896|chr4:68337203-68337206|TCCT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.31591796875	2	530.823692	1059.63283	0.84165	0.00044677	-1.9066	-0.001012	-1.0649	-0.00056528	531.3238726124785	96.923	0.79686	96.923	96.572	97.369	-3.0518E-05					24	17	2	0	0	0	0.023454	1	12340	12340		93.195	34.414	1	98147			18244	38166	12719	12745	20667	20667					0.10540077033874695
FVLSIPLSR	9	Unmodified	_FVLSIPLSR_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.31396484375	2	516.316035	1030.61752	-0.26252	-0.00013554	-4.117	-0.0021257	-4.3795	-0.0022612	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	0.91321	1	12606	12606		31.53	2.3803	1	33267000	+		18245	26412	12720	12746	20668	20668					0.10343210236646883
FVLSSVELQV	10	Unmodified	_FVLSSVELQV_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;VPS53-ABR|1|fusion;EWSR1-ABR|1|fusion;ENST00000573895.1_1_17:959077-961279:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.3116455078125	2	560.816064	1119.61758	-0.34148	-0.00019151	-2.2851	-0.0012815	-2.6266	-0.001473	560.8139092602682	97.933	0.19984	97.768	97.668	97.868	-0.16521					6	4	2	0	0	0	0.03519	1	12112	12112		69.628	23.171	1	98948			18246	6771	12721	12747	20669	20669					0.06255165445986677
FVLSTHPY	8	Unmodified	_FVLSTHPY_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2595520019531	2	482.25036	962.486168	0.45672	0.00022025	-1.4092	-0.00067958	-0.95247	-0.00045933	482.24854085022963	20.796	0.43521	20.628	20.444	20.879	-0.16774					14	8	3	0	0	0	0.027866	1	596	596		29.842	7.8817	1	28310			18247	1191	12722	12748	20670	20670					0.003423998687480889
FVLTPDFLFV	10	Unmodified	_FVLTPDFLFV_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG;PIK3CG|p.M995I|1|0.24|ENSG00000105851|chr7:106886247-106886247|G/A|missense_variant	ENSG00000105851|ENST00000496166|PIK3CG;PIK3CG|p.M995I|1|0.24|ENSG00000105851|chr7:106886247-106886247|G/A|missense_variant	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.3319702148438	2	599.33135	1196.64815	-0.40705	-0.00024396	1.2792	0.00076664	0.8721	0.00052268	599.3319248927479	58.458	0.5349	58.274	58.054	58.589	-0.18385					34	12	3	0	0	0	1.0142	1	6434	6434		44.117	0	1	2071900			18248	2727;18967	12723	12749	20671	20671					0.05768943831026263
FVLTTISA	8	Unmodified	_FVLTTISA_					0	0	0			REV__nc|ENSG00000105492|O43699-5|SIGLEC6	REV__nc|ENSG00000105492|O43699-5|SIGLEC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.24609375	2	426.247286	850.48002	0.40347	0.00017198	-3.3338	-0.001421	-2.9303	-0.001249	426.24579574865595	86.946	2.1354	86.809	86.18	88.315	-0.13734					133	50	5	0	0	0	1.0574	1	10606	10606		25.45	1.2474	1	11262000	+		18249	21531	12724	12750	20672	20672					0.04879881637248218
FVLVKSRKI	9	Unmodified	_FVLVKSRKI_					0	0	0			REV__nc|ENSG00000204920|Q12901-2|ZNF155	REV__nc|ENSG00000204920|Q12901-2|ZNF155	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.31640625	2	545.360776	1088.707	-0.78059	-0.0004257	2.1003	0.0011454	1.3197	0.0007197	545.3625109807728	89.021	0.21004	88.851	88.714	88.924	-0.17053					6	4	2	0	0	0	0.024541	1	10861	10861		16.473	9.7376	1	45681	+		18250	37084	12725	12751	20673	20673					0.1661946491603885
FVLVTWPL	8	Unmodified	_FVLVTWPL_					0	0	0			REV__ENST00000224949.8_1_10:3208456-3209188:-|nuORF	REV__ENST00000224949.8_1_10:3208456-3209188:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7908935546875	2	487.789121	973.56369	-0.9621	-0.0004693	4.0035	0.0019529	3.0414	0.0014836	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.48546	1	10386	10386		86.935	10.088	1	1891000	+		18251	29368	12726	12752	20674	20674					0.0758503780494948
FVLVTWPL	8	Unmodified	_FVLVTWPL_					0	0	0			REV__ENST00000224949.8_1_10:3208456-3209188:-|nuORF	REV__ENST00000224949.8_1_10:3208456-3209188:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7909240722656	2	487.789121	973.56369	0.56547	0.00027583	2.4795	0.0012095	3.0449	0.0014853	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.94001	1	10084	10084		46.766	0.81448	1	2408700	+		18252	29368	12726	12752	20675	20675					0.0758503780494948
FVLWAPAIL	9	Unmodified	_FVLWAPAIL_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1;ENSG00000133019|ENST00000676153|CHRM3;ENSG00000180720|ENST00000682254|CHRM4	nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000180720|ENST00000682254|CHRM4	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2291259765625	2	515.310221	1028.60589	-0.27594	-0.0001422	-0.47734	-0.00024598	-0.75328	-0.00038817	515.3099643495342	61.661	1.2486	61.404	60.848	62.097	-0.25725					59	30	2	0	0	0	0.024389	1	6972	6972		21.702	0	1	1219100			18253	7836;8992	12727	12753	20676	20676					0.0927301321332834
FVLWLLSP	8	Unmodified	_FVLWLLSP_					0	0	0		ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENST00000519875.1_1_8:21997445-21997756:-|nuORF;nc|ENSG00000168476|Q9H6H4-2|REEP4;ENSG00000168476|ENST00000306306|REEP4	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.79095458984375	2	487.789121	973.56369	0.56547	0.00027583	2.4795	0.0012095	3.0449	0.0014853	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	1.0572	1	9987	9987		28.254	0	1	2408700			18254	15942	12728	12754	20677	20677					0.0758503780494948
FVMAAAAARW	10	Unmodified	_FVMAAAAARW_					0	0	0		ENST00000525752.5_1_11:62606897-62607060:-|nuORF;ENST00000541930.5_1_11:62601897-62607060:-|nuORF	ENST00000525752.5_1_11:62606897-62607060:-|nuORF	ENST00000525752.5_1_11:62606897-62607060:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2981567382812	2	547.284211	1092.55387	-1.394	-0.00076293	1.2593	0.00068922	-0.13469	-7.3711E-05	547.284995517439	55.836	0.36879	55.62	55.268	55.637	-0.21551					10	9	2	0	0	0	0.03519	1	5969	5969		30.504	0	1	80580			18255	16100	12729	12755	20678	20678					0.011295265278931765
FVMGNRSGTA	10	Unmodified	_FVMGNRSGTA_					0	0	0			REV__DNAH5|p.V2390G|1|0.08|ENSG00000039139|chr5:13814666-13814666|A/C|missense_variant	REV__DNAH5|p.V2390G|1|0.08|ENSG00000039139|chr5:13814666-13814666|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.7715454101562	2	520.253108	1038.49166	-0.34701	-0.00018053	1.0371	0.00053958	0.69014	0.00035905	520.2534184459608	73.827	0.51218	73.55	73.092	73.605	-0.2769					17	12	2	0	0	0	0.03519	1	8646	8646		39.253	10.103	1	149120	+		18256	19689	12730	12756	20679	20679					-0.026042446110523088
FVMLSAEEL	9	Unmodified	_FVMLSAEEL_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA	ENSG00000187741|ENST00000389301|FANCA	ENSG00000187741|ENST00000389301|FANCA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.76416015625	2	519.762443	1037.51033	-0.74055	-0.00038491	4.2108	0.0021886	3.4703	0.0018037	519.7644358624461	84.096	2.707	84.023	82.633	85.34	-0.072769					132	63	3	0	0	0	0.29104	1	10493	10493		76.847	2.5916	1	641670			18257	9654	12731	12757	20680	20680					-0.006921277598848974
FVNAHNHIL	9	Unmodified	_FVNAHNHIL_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7136840820312	2	532.785433	1063.55631	0.099072	5.2784E-05	-1.2124	-0.00064595	-1.1133	-0.00059317	533.2841974750943	85.699	0.6373	85.504	85.258	85.895	-0.19508					31	14	3	0	0	0	0.024506	1	10420	10420		38.806	12.113	1	110200	+		18258	26290	12732	12758	20681	20681					0.02707698257222546
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.8063354492188	2	576.806031	1151.59751	-0.8799	-0.00050753	1.3392	0.00077243	0.45926	0.0002649	576.8066866501805	74.048	0.68532	74.057	73.837	74.522	0.0096512					43	15	4	0	0	0	0.40693	1	8979	8979		65.465	3.358	1	1293400			18259	4066	12733	12759	20682	20682					0.027774145060448063
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.806031	1151.59751	0.43579	0.00025137	-0.087905	-5.0704E-05	0.34789	0.00020066	576.8059851430243	74.08	0.641	74.08	73.741	74.382	0	0.044017	-0.00056685	NaN	65.465	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1119400			18260	4066	12733	12759							0.027774145060448063
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	576.806031	1151.59751	0.1317	7.5967E-05	0.18088	0.00010433	0.31258	0.0001803	576.8060987565209	74.336	0.46669	74.077	73.86	74.327	-0.25887	0.041156	-0.00025679	NaN	65.465	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1389300			18261	4066	12733	12759							0.027774145060448063
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.806031	1151.59751	0.043009	2.4808E-05	-0.78384	-0.00045212	-0.74083	-0.00042732	577.3065705873447	74.294	0.34716	74.018	73.917	74.265	-0.27573	-0.017681	-0.0013697	NaN	65.465	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319290			18262	4066	12733	12759							0.027774145060448063
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.806031	1151.59751	-0.13208	-7.6185E-05	0.099344	5.7302E-05	-0.032736	-1.8882E-05	576.8059857446782	74.252	0.30806	73.988	73.923	74.231	-0.26326	-0.047648	-0.00035084	NaN	65.465	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235350			18263	4066	12733	12759							0.027774145060448063
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	576.806031	1151.59751	0.13908	8.0223E-05	-2.4549	-0.001416	-2.3159	-0.0013358	577.3054072688388	74.178	0.17543	73.995	73.918	74.094	-0.18279	-0.040937	-0.0032975	NaN	65.465	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189940			18264	4066	12733	12759							0.027774145060448063
FVNLLQNR	8	Unmodified	_FVNLLQNR_					0	0	0			REV__GNPAT|p.I488V|1|0.43|ENSG00000116906|chr1:231270940-231270940|A/G|missense_variant	REV__GNPAT|p.I488V|1|0.43|ENSG00000116906|chr1:231270940-231270940|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.28997802734375	2	502.287808	1002.56106	-0.13472	-6.7667E-05	-1.0805	-0.00054273	-1.2152	-0.0006104	502.28789082084427	88.85	0.50847	88.718	88.443	88.952	-0.13136					20	11	3	0	0	0	0.027866	1	10819	10819		25.45	2.4077	1	80629	+		18265	36076	12734	12760	20683	20683					0.05988582399993447
FVNLLQNR	8	Unmodified	_FVNLLQNR_					0	0	0			REV__GNPAT|p.I488V|1|0.43|ENSG00000116906|chr1:231270940-231270940|A/G|missense_variant	REV__GNPAT|p.I488V|1|0.43|ENSG00000116906|chr1:231270940-231270940|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.287808	1002.56106	0.39859	0.00020021	-1.5994	-0.00080336	-1.2008	-0.00060316	502.28719541492984	88.891	0.63037	88.891	88.555	89.186	0	0.068288	-0.00033481	NaN	25.45	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136650	+		18266	36076	12734	12760							0.05988582399993447
FVNLLQNR	8	Unmodified	_FVNLLQNR_					0	0	0			REV__GNPAT|p.I488V|1|0.43|ENSG00000116906|chr1:231270940-231270940|A/G|missense_variant	REV__GNPAT|p.I488V|1|0.43|ENSG00000116906|chr1:231270940-231270940|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.287808	1002.56106	0.56331	0.00028295	-0.84572	-0.00042479	-0.28241	-0.00014185	502.2877243289291	88.88	0.46596	88.858	88.567	89.033	-0.021645	0.035592	0.00042232	NaN	25.45	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132750	+		18267	36076	12734	12760							0.05988582399993447
FVNVQAVKV	9	Unmodified	_FVNVQAVKV_					0	0	0		ENSG00000158516|ENST00000222481|CPA2	ENSG00000158516|ENST00000222481|CPA2	ENSG00000158516|ENST00000222481|CPA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.78472900390625	2	502.300384	1002.58622	-0.086773	-4.3586E-05	-0.47092	-0.00023654	-0.5577	-0.00028013	502.2999212272442	72.752	0.93974	72.475	72.112	73.051	-0.2769					35	21	2	0	0	0	0.024323	1	8480	8480		44.117	6.9577	1	263800			18268	6678	12735	12761	20684	20684					0.08502637202570895
FVPAATAACS	10	Unmodified	_FVPAATAACS_					0	0	0		ENST00000592623.5_1_19:1438482-1438641:+|nuORF	ENST00000592623.5_1_19:1438482-1438641:+|nuORF	ENST00000592623.5_1_19:1438482-1438641:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.26885986328125	2	469.226028	936.437503	-0.35824	-0.0001681	4.4254	0.0020765	4.0672	0.0019084	469.2284913000667	60.85	0.45493	60.637	60.457	60.912	-0.2134					23	11	3	0	0	0	0.03519	1	6956	6956		35.618	19.145	1	159610			18269	17377	12736	12762	20685	20685					-0.03325836762655854
FVPAKQLH	8	Unmodified	_FVPAKQLH_					0	0	0			REV__ENSG00000236543|ENST00000430816|unknown	REV__ENSG00000236543|ENST00000430816|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2729187011719	2	470.27417	938.533787	-0.28847	-0.00013566	-3.9085	-0.0018381	-4.197	-0.0019737	470.2722458645397	91.332	2.0416	91.209	90.754	92.796	-0.12341					118	48	4	0	0	0	1.0133	1	11184	11184		35.201	1.7077	1	5650700	+		18270	28934	12737	12763	20686	20686					0.06206098859604481
FVPAQFSI	8	Unmodified	_FVPAQFSI_					0	0	0			REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF	REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7456359863281	2	454.747453	907.480354	0.23503	0.00010688	-4.4282	-0.0020137	-4.1932	-0.0019068	454.74535552957695	54.231	1.0027	54.084	53.711	54.714	-0.14723					74	28	4	0	0	0	0.56067	2	5879	5879;5903		79.939	5.5121	1	2782700	+		18271	33698	12738	12764	20687;20688	20687					0.022913013570928342
FVPASPWGLRL	11	Unmodified	_FVPASPWGLRL_					0	0	0		ENSG00000117643|ENST00000374332|MAN1C1	ENSG00000117643|ENST00000374332|MAN1C1	ENSG00000117643|ENST00000374332|MAN1C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.90582275390625	3	414.904636	1241.69208	0.13742	5.7015E-05	2.3099	0.00095841	2.4474	0.0010154	414.90568220470885	21.158	1.9282	21.23	20.86	22.789	0.071487					101	39	5	0	0	0	1.0281	1	586	586		30.569	4.5055	1	3505200			18272	3650	12739	12765	20689	20689					0.08089973048026877
FVPAVKRFSV	10	Unmodified	_FVPAVKRFSV_					0	0	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3453979492188	2	575.342584	1148.67061	0.60114	0.00034586	4.3602	0.0025086	4.9613	0.0028544	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	1.1088	1	12327	12327		31.53	2.3598	1	3650400			18273	7862	12740	12766	20690	20690					0.10222588019314571
FVPFSFSLL	9	Unmodified	_FVPFSFSLL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000543687.1_1_12:124241315-124242576:+|nuORF	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.789794921875	2	528.791861	1055.56917	-0.28265	-0.00014947	-2.306	-0.0012194	-2.5886	-0.0013688	528.790594430676	104.63	0.73366	104.63	104.36	105.09	0.00103					47	22	3	0	0	0	0.55828	1	13404	13404		55.504	0.72789	1	383360			18274	9429	12741	12767	20691	20691					0.04360716596761449
FVPFSFSLL	9	Unmodified	_FVPFSFSLL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000543687.1_1_12:124241315-124242576:+|nuORF	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.7904052734375	2	528.791861	1055.56917	0.12268	6.4873E-05	-2.4051	-0.0012718	-2.2824	-0.0012069	528.7904229333961	104.71	0.69019	104.71	104.43	105.12	-0.0015945					44	21	3	0	0	0	0.52323	1	13363	13363		57.811	7.7867	1	375930			18275	9429	12741	12767	20692	20692					0.04360716596761449
FVPFSFSLL	9	Unmodified	_FVPFSFSLL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000543687.1_1_12:124241315-124242576:+|nuORF	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7904663085938	2	528.791861	1055.56917	0.0069581	3.6794E-06	-2.9071	-0.0015373	-2.9002	-0.0015336	528.7902932408939	104.52	0.86827	104.39	104.1	104.97	-0.1256					50	24	3	0	0	0	0.55828	2	12995	12995;13006		55.504	11.387	1	991500			18276	9429	12741	12767	20693;20694	20693					0.04360716596761449
FVPFSFSLL	9	Unmodified	_FVPFSFSLL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000543687.1_1_12:124241315-124242576:+|nuORF	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7901000976562	2	528.791861	1055.56917	-0.87845	-0.00046452	-1.1852	-0.00062672	-2.0637	-0.0010912	528.7907742527103	104.54	0.93262	104.41	104.11	105.05	-0.12927					65	29	3	0	0	0	0.52323	2	13028	13016;13028		57.811	0	1	925510			18277	9429	12741	12767	20695;20696	20696					0.04360716596761449
FVPFSFSLL	9	Unmodified	_FVPFSFSLL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000543687.1_1_12:124241315-124242576:+|nuORF	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MSMS	OPSCC_40_ClassI_Rep-3	6	528.7902221679688	2	528.791861	1055.56917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.6	1	104.43	103.93	104.93	-0.16585								0	0	0	0.55237	1	13005	13005		45.952	3.0877	1				18278	9429	12741	12767	20697	20697					0.04360716596761449
FVPIFKWL	8	Unmodified	_FVPIFKWL_					0	0	0			REV__ENST00000271620.7_1_1:151007069-151007246:+|nuORF	REV__ENST00000271620.7_1_1:151007069-151007246:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2876586914062	2	525.312764	1048.61097	-0.99336	-0.00052183	-0.63437	-0.00033325	-1.6277	-0.00085507	525.3123812862679	82.35	1.1425	82.35	81.909	83.051	0					53	26	3	0	0	0	0.027866	1	10305	10305		42.474	0	1	224970	+		18279	29804	12742	12768	20698	20698					0.08861317075934494
FVPIWTSK	8	Unmodified	_FVPIWTSK_					0	0	0			REV__ENST00000298569.8_1_5:175782728-175786816:-|nuORF	REV__ENST00000298569.8_1_5:175782728-175786816:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.2635498046875	2	489.276378	976.538203	-0.7442	-0.00036412	-3.4864	-0.0017058	-4.2306	-0.0020699	489.27454561573643	27.964	0.75443	27.719	27.246	28.001	-0.24524					36	17	4	0	0	0	0.027866	1	1621	1621		30.504	11.144	1	198430	+		18280	30027	12743	12769	20699	20699					0.04899563282504005
FVPIWTSK	8	Unmodified	_FVPIWTSK_					0	0	0			REV__ENST00000298569.8_1_5:175782728-175786816:-|nuORF	REV__ENST00000298569.8_1_5:175782728-175786816:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.276378	976.538203	-0.035027	-1.7138E-05	-4.5022	-0.0022028	-4.5372	-0.00222	489.27409802686066	27.894	0.40239	27.742	27.482	27.885	-0.15195	0.011226	-0.00035874	NaN	16.473	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184280	+		18281	30027	12743	12769							0.04899563282504005
FVPLFTLIL	9	Unmodified	_FVPLFTLIL_					0	0	0			REV__ENST00000563829.5_1_15:75145788-75146232:-|nuORF	REV__ENST00000563829.5_1_15:75145788-75146232:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.78564453125	2	531.833529	1061.6525	-1.2379	-0.00065835	-3.1831	-0.0016929	-4.421	-0.0023512	531.8317981875238	46.475	0.64949	46.323	46.209	46.859	-0.15157					39	17	3	0	0	0	0.024466	1	4655	4655		25.45	0	1	1222100	+		18282	35237	12744	12770	20700	20700					0.12414453044630136
FVPLFVPSI	9	Unmodified	_FVPLFVPSI_					0	0	0			REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8036193847656	2	509.802229	1017.5899	0.50937	0.00025968	2.3622	0.0012042	2.8715	0.0014639	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.78069	1	10884	10884		40.573	6.4001	1	2754700	+		18283	33333	12745	12771	20701	20701					0.08181306976428004
FVPLFVPSI	9	Unmodified	_FVPLFVPSI_					0	0	0			REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8031311035156	2	509.802229	1017.5899	0.60396	0.0003079	2.032	0.0010359	2.6359	0.0013438	509.80316832379725	83.279	2.7899	83.067	81.496	84.286	-0.21159					160	64	4	0	0	0	0.83071	1	10010	10010		37.159	0.13063	1	1089300	+		18284	33333	12745	12771	20702	20702					0.08181306976428004
FVPLFVPSI	9	Unmodified	_FVPLFVPSI_					0	0	0			REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8037414550781	2	509.802229	1017.5899	0.28678	0.0001462	2.5802	0.0013154	2.8669	0.0014616	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.67308	2	10454	10454;10552		47.916	6.8513	1	3746700	+		18285	33333	12745	12771	20703;20704	20703					0.08181306976428004
FVPLRFNGGGF	11	Unmodified	_FVPLRFNGGGF_					0	0	0			REV__ENST00000482818.1_1_22:29725562-29725973:-|nuORF	REV__ENST00000482818.1_1_22:29725562-29725973:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9000549316406	3	404.217102	1209.62948	-0.57516	-0.00023249	-3.2347	-0.0013075	-3.8098	-0.00154	404.216859135911	28.522	0.36497	28.277	28.041	28.406	-0.24524					14	8	2	0	0	0	0.024748	1	1688	1688		24.232	6.3987	1	37279	+		18286	33493	12746	12772	20705	20705					0.03304826979842801
FVPLWLGV	8	Unmodified	_FVPLWLGV_					0	0	0		ENST00000546151.5_1_11:61125276-61129264:-|nuORF	ENST00000546151.5_1_11:61125276-61129264:-|nuORF	ENST00000546151.5_1_11:61125276-61129264:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7790222167969	2	465.776014	929.537475	0.30012	0.00013979	3.0384	0.0014152	3.3385	0.001555	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.9599	1	9676	9676		43.626	1.2299	1	1281300			18287	16506	12747	12773	20706	20706					0.06988768633470954
FVPLWLSL	8	Unmodified	_FVPLWLSL_					0	0	0		ENST00000524311.1_1_X:148850572-148853026:+|nuORF;ENSG00000269556|ENST00000600449|TMEM185A;ENSG00000226479|ENST00000426077|TMEM185B	ENST00000524311.1_1_X:148850572-148853026:+|nuORF	ENST00000524311.1_1_X:148850572-148853026:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7909240722656	2	487.789121	973.56369	0.37956	0.00018514	2.6849	0.0013097	3.0645	0.0014948	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.96719	1	10087	10087		42.474	0	1	2659000			18288	10663	12748	12774	20707	20707					0.0758503780494948
FVPPPLPRA	9	Unmodified	_FVPPPLPRA_					0	0	0			REV__ENST00000592120.5_2_16:4897730-4897901:+|nuORF	REV__ENST00000592120.5_2_16:4897730-4897901:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.268310546875	2	497.297645	992.580737	-0.10571	-5.2568E-05	1.9195	0.00095456	1.8138	0.00090199	497.2975403474075	36.452	1.0028	36.452	35.924	36.927	0					47	27	3	0	0	0	0.024386	1	2913	2913		33.516	4.366	1	478530	+		18289	35740	12749	12775	20708	20708					0.08414958410742202
FVPQEVTLN	9	Unmodified	_FVPQEVTLN_					0	0	0			REV__ENSG00000183066|ENST00000328823|WBP2NL	REV__ENSG00000183066|ENST00000328823|WBP2NL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.7793579101562	2	523.779482	1045.54441	-0.33866	-0.00017738	0.22321	0.00011691	-0.11544	-6.0467E-05	523.7795040828491	78.192	1.6125	78.208	77.698	79.311	0.015907					103	38	4	0	0	0	0.22902	1	9636	9636		85.161	2.9203	1	1934300	+		18290	27533	12750	12776	20709	20709					0.023460367234065416
FVPQVQKH	8	Unmodified	_FVPQVQKH_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7941589355469	2	491.777077	981.5396	-0.55242	-0.00027167	-3.1659	-0.0015569	-3.7184	-0.0018286	491.7754049460621	29.035	0.52633	29.038	28.713	29.24	0.0031357					30	12	3	0	0	0	0.027866	1	1720	1720		40.573	0	1	526340			18291	8974	12751	12777	20710	20710					0.04809197371287155
FVPRPIIPS	9	Unmodified	_FVPRPIIPS_					0	0	0		ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	ENST00000594151.5_1_19:50354026-50354089:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7869873046875	2	513.310752	1024.60695	-0.2611	-0.00013402	0.95844	0.00049198	0.69735	0.00035796	513.3111296408628	71.406	0.68963	71.416	70.854	71.544	0.010735					28	17	2	0	0	0	0.024405	1	8571	8571		44.117	12.162	1	343470			18292	17402	12752	12778	20711	20711					0.09563227582248146
FVPRQILIF	9	Unmodified	_FVPRQILIF_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.276611328125	2	566.847502	1131.68045	-0.53954	-0.00030584	-0.08717	-4.9412E-05	-0.62671	-0.00035525	566.8471823480679	82.684	0.21716	82.543	82.434	82.651	-0.14014					6	4	2	0	0	0	0.024541	1	9951	9951		19.36	0	1	31132	+		18293	24659	12753	12779	20712	20712					0.11987776024716368
FVPSFTNYV	9	Unmodified	_FVPSFTNYV_					0	0	0			REV__ENST00000585682.5_1_4:159047074-159047500:-|nuORF	REV__ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2959594726562	2	537.26875	1072.52295	-0.41709	-0.00022409	-3.3668	-0.0018089	-3.7839	-0.002033	537.266839443486	63.538	1.1182	63.287	63.048	64.166	-0.25141					62	30	3	0	0	0	0.024292	1	7369	7369		49.442	27.482	1	2548100	+		18294	35582	12754	12780	20713	20713					-0.010413483053525852
FVPSLIAFVW	10	Unmodified	_FVPSLIAFVW_					0	0	0		ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.77734375	2	589.83406	1177.65357	-1.7873	-0.0010542	-1.8565	-0.001095	-3.6438	-0.0021492	589.8328064170881	81.112	0.71979	80.981	80.619	81.339	-0.13074					53	17	4	0	0	0	0.03519	1	10044	10044		33.516	3.1979	1	1136600			18295	5306	12755	12781	20714	20714					0.07184667413525858
FVPVQPLSSP	10	Unmodified	_FVPVQPLSSP_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7981567382812	2	535.797675	1069.5808	-0.80616	-0.00043194	1.2176	0.00065239	0.41145	0.00022045	535.7981316816789	89.086	1.1753	88.923	88.513	89.688	-0.1626					61	27	3	0	0	0	0.941	1	10859	10859		51.335	12.083	1	1110000			18296	4532	12756	12782	20715	20715					0.04878913620109415
FVPVQPLSSP	10	Unmodified	_FVPVQPLSSP_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7977294921875	2	535.797675	1069.5808	-0.53181	-0.00028495	0.84264	0.00045148	0.31083	0.00016654	535.797941737191	89.075	1.3545	88.948	88.405	89.76	-0.12774					75	31	4	0	0	0	0.71272	1	10879	10879		66.429	13.493	1	1107800			18297	4532	12756	12782	20716	20716					0.04878913620109415
FVPVYDNK	8	Unmodified	_FVPVYDNK_					0	0	0			REV__ENSG00000138161|ENST00000392790|CUZD1	REV__ENSG00000138161|ENST00000392790|CUZD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.3059387207031	2	491.255643	980.496732	0.88718	0.00043583	-1.9129	-0.00093974	-1.0257	-0.0005039	491.25443911276477	59.003	0.76445	59.003	58.643	59.408	0					37	20	3	0	0	0	0.027866	1	6777	6777		40.778	18.818	1	356580	+		18298	23828	12757	12783	20717	20717					0.005703825231876181
FVQDLFAKV	9	Unmodified	_FVQDLFAKV_					0	0	0			REV__ENSG00000147894|ENST00000380003|C9orf72	REV__ENSG00000147894|ENST00000380003|C9orf72	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2763061523438	2	533.800217	1065.58588	-2.0634	-0.0011014	-1.4984	-0.00079984	-3.5617	-0.0019013	533.7994149427187	52.305	0.47842	52.036	51.76	52.238	-0.26903					22	12	2	0	0	0	0.024495	1	5413	5413		26.693	4.733	1	778420	+		18299	24587	12758	12784	20718	20718					0.055712174827021954
FVQFKEEL	8	Unmodified	_FVQFKEEL_					0	0	0		nc|ENSG00000160218|P48553-2|TRAPPC10;ENSG00000160218|ENST00000291574|TRAPPC10	nc|ENSG00000160218|P48553-2|TRAPPC10	nc|ENSG00000160218|P48553-2|TRAPPC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.276611328125	2	520.276575	1038.5386	-0.50137	-0.00026085	0.29353	0.00015272	-0.20785	-0.00010814	520.2765023409589	91.879	1.7295	91.871	90.956	92.686	-0.0082855					84	41	4	0	0	0	0.74904	1	11620	11620		63.306	2.3343	1	1875400			18300	6793	12759	12785	20719	20719					0.020869382117098212
FVQGRRITT	9	Unmodified	_FVQGRRITT_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2;ENST00000477917.5_1_2:220147847-220147958:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2466430664062	2	539.311815	1076.60908	-0.71376	-0.00038494	-0.78297	-0.00042226	-1.4967	-0.00080721	539.3110962362217	35.545	0.47082	35.33	35.1	35.571	-0.21555					17	11	2	0	0	0	0.024506	1	2741	2741		16.473	0.83134	1	126480			18301	4952	12760	12786	20720	20720					0.07383656320030241
FVQPLKTTP	9	Unmodified	_FVQPLKTTP_					0	0	0			REV__ENST00000344120.4_1_5:141690156-141690324:-|nuORF	REV__ENST00000344120.4_1_5:141690156-141690324:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.284423828125	2	515.800217	1029.58588	-1.002	-0.00051683	0.97042	0.00050054	-0.031581	-1.629E-05	515.8005723902719	83.012	0.89879	83.039	82.231	83.13	0.026558					30	20	2	0	0	0	0.024323	1	10212	10212		44.117	11.304	1	53817	+		18302	30678	12761	12787	20721	20721					0.07227217482704873
FVQRMITP	8	Unmodified	_FVQRMITP_					0	0	0			REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.2713623046875	2	496.273312	990.532072	-0.64462	-0.00031991	-3.61	-0.0017915	-4.2546	-0.0021114	496.27126200862347	38.822	1.0012	38.601	38.186	39.188	-0.22165					56	26	3	0	0	0	0.91239	1	3216	3216		50.025	0.58299	1	4008000	+		18303	36856	12762	12788	20722	20722					0.03642721779340263
FVQSWTNL	8	Unmodified	_FVQSWTNL_					0	0	0		ENSG00000138653|ENST00000264363|NDST4;NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant;nc|ENSG00000138653|Q9H3R1-2|NDST4	ENSG00000138653|ENST00000264363|NDST4	ENSG00000138653|ENST00000264363|NDST4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.8094482421875	2	497.753267	993.491981	0.12435	6.1896E-05	-3.8227	-0.0019028	-3.6984	-0.0018409	497.75102236830406	23.324	0.53859	23.122	22.78	23.318	-0.20193					23	11	3	0	0	0	0.027866	1	920	920		74.255	30.138	1	131500			18304	5261	12763	12789	20723	20723					-0.005025016195759235
FVRDDAEQS	9	Unmodified	_FVRDDAEQS_					0	0	0			REV__AGPS-MOB4|1|fusion	REV__AGPS-MOB4|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7899169921875	2	533.743628	1065.4727	0.50734	0.00027079	-3.7068	-0.0019785	-3.1995	-0.0017077	533.7418348929519	64.154	0.29101	64.199	64.081	64.372	0.045502					10	7	2	0	0	0	0.024374	1	7470	7470		32.812	11.865	1	68938	+		18305	19087	12764	12790	20724	20724					-0.0574150270113023
FVRKASLW	8	Unmodified	_FVRKASLW_					0	0	0		ENST00000505076.1_1_11:48967299-48973146:+|nuORF	ENST00000505076.1_1_11:48967299-48973146:+|nuORF	ENST00000505076.1_1_11:48967299-48973146:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7607727050781	2	503.795269	1005.57599	-0.74524	-0.00037545	1.3953	0.00070296	0.65009	0.00032751	504.2971329791349	65.38	0.20283	65.129	64.986	65.189	-0.25112					6	4	2	0	0	0	0.027866	1	7457	7457		38.806	10.924	1	31440			18306	15726	12765	12791	20725	20725					0.07342074267990029
FVRKKLKI	8	Unmodified	_FVRKKLKI_					0	0	0			REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;REV__NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant	REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3138427734375	2	516.358037	1030.70152	-0.26356	-0.00013609	0.99512	0.00051384	0.73156	0.00037775	516.3585353770337	97.961	0.46288	97.961	97.727	98.19	0					15	10	2	0	0	0	0.027866	1	12506	12506		21.702	6.0661	1	127020	+		18307	26156;37267	12766	12792	20726	20726					0.18739786124228885
FVRKKLKI	8	Unmodified	_FVRKKLKI_					0	0	0			REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;REV__NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant	REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2680053710938	2	516.358037	1030.70152	-0.73665	-0.00038037	0.66713	0.00034448	-0.069522	-3.5898E-05	516.3580501725672	28.06	0.64817	27.814	27.593	28.241	-0.24524					18	15	2	0	0	0	0.027866	1	1651	1651		20.482	0	1	60752	+		18308	26156;37267	12766	12792	20727	20727					0.18739786124228885
FVRKKSSL	8	Unmodified	_FVRKKSSL_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.R338Kfs*5|1|0.2|ENSG00000171320|chr8:27784051-27784052|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.8003845214844	2	482.800552	963.58655	0.35335	0.0001706	-0.50862	-0.00024556	-0.15527	-7.4963E-05	482.80018331479494	19.911	0.8228	19.75	19.43	20.253	-0.16079					39	16	4	0	0	0	0.6536	2	484	475;484		71.296	26.765	1	658380			18309	8140	12767	12793	20728;20729	20729					0.10330056922430231
FVRKKSSL	8	Unmodified	_FVRKKSSL_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.R338Kfs*5|1|0.2|ENSG00000171320|chr8:27784051-27784052|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.8002624511719	2	482.800552	963.58655	0.97368	0.00047009	-1.155	-0.00055763	-0.18132	-8.7541E-05	482.79986757146673	19.976	0.72742	19.776	19.554	20.282	-0.2001					33	14	4	0	0	0	0.6536	1	484	484		71.296	30.723	1	640920			18310	8140	12767	12793	20730	20730					0.10330056922430231
FVRKKSSL	8	Unmodified	_FVRKKSSL_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.R338Kfs*5|1|0.2|ENSG00000171320|chr8:27784051-27784052|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.8001708984375	2	482.800552	963.58655	0.93477	0.00045131	-1.0631	-0.00051327	-0.12835	-6.1968E-05	482.7998860594238	19.977	0.78259	19.754	19.533	20.315	-0.22344					36	15	4	0	0	0	0.87148	1	460	460		53.351	14.545	1	625170			18311	8140	12767	12793	20731	20731					0.10330056922430231
FVRKLSGLL	9	Unmodified	_FVRKLSGLL_					0	0	0		ENSG00000180044|ENST00000326474|C3orf80	ENSG00000180044|ENST00000326474|C3orf80	ENSG00000180044|ENST00000326474|C3orf80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.8308715820312	2	516.831852	1031.64915	-0.054355	-2.8092E-05	-0.40899	-0.00021138	-0.46335	-0.00023947	516.8315335799879	53.822	1.2399	53.576	53.275	54.515	-0.2453					89	37	5	0	0	0	0.77768	1	5671	5671		40.778	1.7567	1	13185000			18312	8955	12768	12794	20732	20732					0.1345920299061163
FVRKVGAF	8	Unmodified	_FVRKVGAF_					0	0	0		nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	nc|ENSG00000175224|O75143-4|ATG13	nc|ENSG00000175224|O75143-4|ATG13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.23004150390625	2	462.276712	922.538872	-0.28604	-0.00013223	-4.1834	-0.0019339	-4.4694	-0.0020661	462.27471969863416	39.611	0.38511	39.635	39.455	39.84	0.023727					15	10	2	0	0	0	0.027866	1	3342	3342		14.664	0.88877	1	126730			18313	8543	12769	12795	20733	20733					0.07450402722236049
FVRLEGLR	8	Unmodified	_FVRLEGLR_					0	0	0			REV__ENSG00000099377|ENST00000297679|HSD3B7	REV__ENSG00000099377|ENST00000297679|HSD3B7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2974853515625	2	495.298176	988.581799	-0.12243	-6.064E-05	-1.3801	-0.00068356	-1.5025	-0.0007442	495.29738787129725	100.89	0.96138	100.89	100.51	101.47	0.0090332					41	22	2	0	0	0	0.89627	1	12858	12858		51.335	1.3109	1	1521900	+		18314	21004	12770	12796	20734	20734					0.08705172779673376
FVRLEWSSD	9	Unmodified	_FVRLEWSSD_					0	0	0			REV__ENSG00000149781|ENST00000345728|FERMT3	REV__ENSG00000149781|ENST00000345728|FERMT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2315063476562	2	569.780013	1137.54547	-0.029517	-1.6818E-05	-1.3477	-0.0007679	-1.3772	-0.00078472	569.7790388178638	76.476	0.16483	76.208	76.088	76.253	-0.26806					5	3	2	0	0	0	0.02435	1	9070	9070		34.173	19.308	1	50230	+		18315	24699	12771	12797	20735	20735					-0.01779748907688372
FVRLLISH	8	Unmodified	_FVRLLISH_					0	0	0		nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4;ENST00000596338.5_1_19:49685858-49692185:+|nuORF;ENST00000598502.5_1_19:49671539-49686431:+|nuORF	nc|ENSG00000130529|Q8TD43-2|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7500915527344	2	492.803094	983.591636	-0.63623	-0.00031354	3.1858	0.00157	2.5496	0.0012565	492.8045877449589	46.212	0.37512	46.01	45.819	46.194	-0.20226					15	9	2	0	0	0	0.027866	1	4411	4411		1.3276	0	1	194570			18316	4428	12772	12798	20736	20736					0.09918360785059122
FVRLLVFLSGT	11	Unmodified	_FVRLLVFLSGT_					0	0	0			REV__ENSG00000006007|ENST00000353258|GDE1	REV__ENSG00000006007|ENST00000353258|GDE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.3798217773438	2	626.376623	1250.73869	0.33644	0.00021074	4.4738	0.0028023	4.8103	0.003013	626.3792889018249	104.56	1.023	104.39	104.02	105.04	-0.16791					95	33	5	0	0	0	0.98625	1	12991	12991		45.972	19.279	1	2470500	+		18317	19817	12773	12799	20737	20737					0.12335412879338037
FVRLPRGL	8	Unmodified	_FVRLPRGL_					0	0	0		ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2838439941406	2	479.303262	956.59197	0.29269	0.00014028	2.952	0.0014149	3.2447	0.0015552	479.3044662122811	75.443	0.18138	75.454	75.288	75.47	0.010376					7	4	2	0	0	0	0.027866	1	9164	9164		20.482	12.251	1	299280			18318	1876	12774	12800	20738	20738					0.11193780504913775
FVRPPLII	8	Unmodified	_FVRPPLII_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77764892578125	2	477.810388	953.606223	0.26579	0.000127	0.57152	0.00027308	0.83731	0.00040008	477.8114314299501	27.415	0.43684	27.415	27.179	27.616	0					21	11	3	0	0	0	0.027866	1	1464	1464		35.201	6.9464	1	553410			18319	5077	12775	12801	20739	20739					0.12756432933190354
FVRPPLII	8	Unmodified	_FVRPPLII_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.777587890625	2	477.810388	953.606223	-0.92152	-0.00044031	2.3111	0.0011043	1.3896	0.00066396	477.81144851568587	27.171	0.32229	27.252	26.96	27.282	0.081293					11	8	2	0	0	0	0.027866	1	1402	1402		35.201	6.9464	1	118570			18320	5077	12775	12801	20740	20740					0.12756432933190354
FVRPPPYHPK	10	Unmodified	_FVRPPPYHPK_					0	0	0		ENST00000486101.1_1_17:73894933-73895551:-|nuORF;nc|ENSG00000204316|Q96DV4-2|MRPL38;ENSG00000204316|ENST00000309352|MRPL38	ENST00000486101.1_1_17:73894933-73895551:-|nuORF	ENST00000486101.1_1_17:73894933-73895551:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.87664794921875	3	413.232864	1236.67676	-0.79151	-0.00032708	-0.11744	-4.853E-05	-0.90895	-0.00037561	413.23293355643705	29.956	0.9408	30.034	29.607	30.548	0.078344					37	22	2	0	0	0	0.03519	1	1778	1778		27.047	0	1	560530			18321	10330	12776	12802	20741	20741					0.06789106250835175
FVRQASIF	8	Unmodified	_FVRQASIF_					0	0	0			REV__ENST00000378509.8_1_7:133975980-133976244:-|nuORF	REV__ENST00000378509.8_1_7:133975980-133976244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2532653808594	2	484.271627	966.528701	-0.21185	-0.00010259	4.2934	0.0020792	4.0816	0.0019766	484.27310436696814	52.527	0.58367	52.619	52.28	52.864	0.091942					22	14	2	0	0	0	0.027866	1	5531	5531		68.485	8.1907	1	321170	+		18322	31403	12777	12803	20742	20742					0.04409794996990968
FVRQPGLL	8	Unmodified	_FVRQPGLL_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5;REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7892150878906	2	465.281995	928.549437	0.034217	1.592E-05	0.34876	0.00016227	0.38298	0.00017819	465.28203990892376	70.13	0.57406	69.879	69.608	70.182	-0.25063					19	13	2	0	0	0	0.027866	1	8129	8129		20.482	0	1	101890	+		18323	23137;31135	12778	12804	20743	20743					0.08230385376668892
FVRQVKFLN	9	Unmodified	_FVRQVKFLN_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;PTPRT|p.P1075L|1|0.24|ENSG00000196090|chr20:42110363-42110363|G/A|missense_variant	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.84326171875	2	575.840208	1149.66586	0.50468	0.00029062	4.3999	0.0025336	4.9045	0.0028242	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.78069	1	11220	11220		40.573	6.4001	1	1452500			18324	9818	12779	12805	20744	20744					0.0970170387656708
FVRRARQV	8	Unmodified	_FVRRARQV_					0	0	0			REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF	REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2670288085938	2	516.314692	1030.61483	-0.35669	-0.00018416	0.13292	6.863E-05	-0.22376	-0.00011553	516.314634319493	31.266	0.1676	31.278	31.214	31.382	0.011797					5	3	2	0	0	0	0.027866	1	2053	2053		12.959	0	1	40655	+		18325	32897	12780	12806	20745	20745					0.10074799622361752
FVRRGRPAS	9	Unmodified	_FVRRGRPAS_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3040161132812	2	523.304324	1044.5941	-0.50892	-0.00026632	-0.43455	-0.0002274	-0.94347	-0.00049372	523.3039441520884	90.238	1.1068	90.113	89.805	90.912	-0.12513					64	26	4	0	0	0	0.83071	1	11056	11056		37.159	9.2769	1	1517700	+		18326	23690	12781	12807	20746	20746					0.0735820924271593
FVRRGRPAS	9	Unmodified	_FVRRGRPAS_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3035888671875	2	523.304324	1044.5941	0.29692	0.00015538	-1.7285	-0.00090452	-1.4316	-0.00074914	523.3032989158403	89.717	0.56227	89.58	89.273	89.836	-0.13761					34	12	3	0	0	0	0.94809	1	10952	10952		29.15	0	1	910160	+		18327	23690	12781	12807	20747	20747					0.0735820924271593
FVRRVANI	8	Unmodified	_FVRRVANI_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79718017578125	2	487.798343	973.582134	-0.47015	-0.00022934	-2.0389	-0.00099456	-2.509	-0.0012239	487.7972225991239	75.737	1.5239	75.492	75.191	76.715	-0.24455					98	39	4	0	0	0	0.78609	1	9274	9274		60.294	10.269	1	9873000			18328	1982	12782	12808	20748	20748					0.09428592499511979
FVRSNSEL	8	Unmodified	_FVRSNSEL_					0	0	0			REV__ENSG00000184163|ENST00000330388|C1QTNF12;REV__ENST00000462849.1_1_1:1177930-1178707:-|nuORF	REV__ENSG00000184163|ENST00000330388|C1QTNF12	MSMS	OPSCC_40_ClassI_Rep-3	6	476.2494812011719	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.24	1	101.07	100.57	101.57	-0.17178								0	0	0	0.83467	1	12554	12554		31.955	3.7006	1		+		18329	27641;32916	12783	12809	20749	20749					0.00492310375057059
FVRSPSETT	9	Unmodified	_FVRSPSETT_					0	0	0			REV__ENSG00000166669|ENST00000562102|ATF7IP2	REV__ENSG00000166669|ENST00000562102|ATF7IP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2813720703125	2	512.258914	1022.50327	-0.31938	-0.0001636	2.046	0.0010481	1.7266	0.00088446	512.2592612236157	96.051	0.25778	95.894	95.707	95.965	-0.15646					6	5	2	0	0	0	0.023239	1	11835	11835		74.255	35.002	1	26105	+		18330	26040	12784	12810	20750	20750					-0.0070772431608929764
FVSAIVHINY	10	Unmodified	_FVSAIVHINY_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.81640625	2	581.816399	1161.61824	-1.959	-0.0011398	1.6705	0.00097192	-0.28855	-0.00016788	581.8172877915516	65.164	0.80653	64.961	64.5	65.307	-0.20254					57	19	4	0	0	0	0.50466	1	7447	7447		87.754	8.0417	1	3675200	+		18331	20350	12785	12811	20751	20751					0.04390004885704002
FVSEDSTK	8	Unmodified	_FVSEDSTK_					0	0	0		ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2823791503906	2	456.71909	911.423627	-0.010852	-4.9561E-06	-0.95066	-0.00043418	-0.96151	-0.00043914	456.7183818037195	34.665	0.35146	34.665	34.515	34.867	0					13	8	2	0	0	0	0.027866	1	2621	2621		32.812	0	1	138400			18332	3878	12786	12812	20752	20752					-0.035627909900881605
FVSHLETEL	9	Unmodified	_FVSHLETEL_					0	0	0		nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	nc|ENSG00000142459|Q96CN4|EVI5L	nc|ENSG00000142459|Q96CN4|EVI5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3076782226562	2	537.776939	1073.53933	-0.35195	-0.00018927	-2.4234	-0.0013032	-2.7753	-0.0014925	538.2771025895272	68.006	1.0586	68.025	67.59	68.648	0.018921					43	27	3	0	0	0	0.021088	1	8097	8097		90.777	10.322	1	148610			18333	5561	12787	12813	20753	20753					0.005497328607589225
FVSIDRCLQL	10	Unmodified	_FVSIDRCLQL_					0	0	0		ENSG00000174946|ENST00000309180|GPR171	ENSG00000174946|ENST00000309180|GPR171	ENSG00000174946|ENST00000309180|GPR171	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	597.2821655273438	2	597.320991	1192.62743	-1.0877	-0.00064971	-0.17601	-0.00010513	-1.2637	-0.00075484	597.3206059689478	76.501	0.60858	76.272	76.041	76.65	-0.22843					33	14	3	0	0	0	0.03519	1	9408	9408		113.41	20.268	1	515050			18334	8513	12788	12814	20754	20754					0.03882030179738649
FVSIKVKQN	9	Unmodified	_FVSIKVKQN_					0	0	0		ENST00000310528.8_1_13:53273405-53273483:+|nuORF	ENST00000310528.8_1_13:53273405-53273483:+|nuORF	ENST00000310528.8_1_13:53273405-53273483:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8163452148438	2	531.818941	1061.62333	0.2667	0.00014184	-4.0942	-0.0021774	-3.8275	-0.0020355	531.8167658167134	100.04	0.8317	99.916	99.571	100.4	-0.12504					34	25	2	0	0	0	0.94809	1	12436	12436		29.15	1.0681	1	678900			18335	12064	12789	12815	20755	20755					0.09498308748334239
FVSILKLAR	9	Unmodified	_FVSILKLAR_					0	0	0			REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2633056640625	2	523.839677	1045.6648	-0.80511	-0.00042175	-0.43444	-0.00022758	-1.2396	-0.00064933	523.8392946873317	54.354	0.3053	54.218	54.021	54.326	-0.13617					16	8	2	0	0	0	0.024495	1	5754	5754		34.173	12.47	1	144890	+		18336	33020	12790	12816	20756	20756					0.14379489507655308
FVSILKLAR	9	Unmodified	_FVSILKLAR_					0	0	0			REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.263916015625	2	523.839677	1045.6648	-0.024766	-1.2973E-05	-0.27414	-0.00014361	-0.29891	-0.00015658	523.8393295413596	54.949	0.90682	54.718	54.056	54.963	-0.23087					43	25	3	0	0	0	0.024209	1	5779	5779		47.657	3.5405	1	518750	+		18337	33020	12790	12816	20757	20757					0.14379489507655308
FVSILKLAR	9	Unmodified	_FVSILKLAR_					0	0	0			REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2635498046875	2	523.839677	1045.6648	0.67257	0.00035232	-1.0894	-0.00057067	-0.41683	-0.00021835	523.8389302304209	54.942	0.92496	54.736	54.051	54.976	-0.20613					42	24	3	0	0	0	0.024477	1	5749	5749		20.947	0	1	411580	+		18338	33020	12790	12816	20758	20758					0.14379489507655308
FVSILKLAR	9	Unmodified	_FVSILKLAR_					0	0	0			REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	REV__ENST00000465997.1_1_20:44463683-44469293:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.839677	1045.6648	-0.64822	-0.00033956	0.30795	0.00016132	-0.34027	-0.00017825	523.8397323671294	54.785	0.70527	54.639	54.316	55.022	-0.14609	-0.05872	0.00070462	NaN	39.253	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329300	+		18339	33020	12790	12816							0.14379489507655308
FVSLACLIK	9	Unmodified	_FVSLACLIK_					0	0	0		ENST00000265192.8_1_5:138704483-138704675:+|nuORF	ENST00000265192.8_1_5:138704483-138704675:+|nuORF	ENST00000265192.8_1_5:138704483-138704675:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.28533935546875	2	497.293714	992.572874	-0.1776	-8.8318E-05	3.5736	0.0017771	3.396	0.0016888	497.29560725823376	34.529	0.35733	34.305	34.142	34.499	-0.22412					12	8	2	0	0	0	0.024457	1	2567	2567		21.96	1.4781	1	119070			18340	11586	12791	12817	20759	20759					0.07629063098966071
FVSLLHGVL	9	Unmodified	_FVSLLHGVL_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.7828063964844	2	492.797478	983.580402	-0.69123	-0.00034064	0.84795	0.00041787	0.15672	7.7231E-05	492.7983265315893	78.188	0.21568	77.926	77.818	78.034	-0.26202					6	4	2	0	0	0	0.024436	1	9314	9314		38.806	0	1	45794			18341	1720	12792	12818	20760	20760					0.08795538690912963
FVSLLRSPE	9	Unmodified	_FVSLLRSPE_					0	0	0			REV__ENST00000229416.10_1_6:53409297-53409843:-|nuORF	REV__ENST00000229416.10_1_6:53409297-53409843:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2968139648438	2	524.295299	1046.57605	-0.31499	-0.00016515	4.1351	0.002168	3.8202	0.0020029	524.2973676751948	100.38	1.3018	100.39	99.91	101.21	0.010117					96	32	5	0	0	0	0.32811	1	12787	12787		71.877	0.49956	1	2834100	+		18342	29399	12793	12819	20761	20761					0.05462029477325814
FVSLVKDLA	9	Unmodified	_FVSLVKDLA_					0	0	0		ENST00000532160.1_1_11:134095196-134104948:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	ENST00000532160.1_1_11:134095196-134104948:+|nuORF	ENST00000532160.1_1_11:134095196-134104948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.29754638671875	2	496.294768	990.574983	0.0039729	1.9718E-06	-0.85315	-0.00042341	-0.84918	-0.00042144	496.2944940575575	54.298	0.41658	54.298	53.976	54.393	0					24	11	3	0	0	0	0.024261	1	5938	5938		45.972	20.398	1	696570			18343	6208	12794	12820	20762	20762					0.07931815108429419
FVSQFYLL	8	Unmodified	_FVSQFYLL_					0	0	0		HCFC2|p.L610F|1|0.41|ENSG00000111727|chr12:104098432-104098432|G/T|missense_variant	HCFC2|p.L610F|1|0.41|ENSG00000111727|chr12:104098432-104098432|G/T|missense_variant	HCFC2|p.L610F|1|0.41|ENSG00000111727|chr12:104098432-104098432|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7931823730469	2	508.776211	1015.53787	0.078618	3.9999E-05	-4.134	-0.0021033	-4.0553	-0.0020633	508.77385359860415	68.461	0.93254	68.168	67.781	68.714	-0.29267					39	20	3	0	0	0	0.027866	1	8187	8187		33.516	12.569	1	826030			18344	17708	12795	12821	20763	20763					0.030721435626674065
FVSRMHVVV	9	Unmodified	_FVSRMHVVV_					0	0	0			REV__ENSG00000119965|ENST00000481909|C10orf88	REV__ENSG00000119965|ENST00000481909|C10orf88	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.328125	2	537.299862	1072.58517	-1.3723	-0.00073735	3.4356	0.0018459	2.0632	0.0011086	537.3016234135698	43.858	0.38649	43.714	43.461	43.848	-0.14471					19	10	3	0	0	0	0.024436	1	4132	4132		30.504	0	1	231460	+		18345	22504	12796	12822	20764	20764					0.05178099562021998
FVSSYERRIQE	11	Unmodified	_FVSSYERRIQE_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.2043762207031	3	471.908886	1412.70483	-0.33048	-0.00015596	2.4811	0.0011708	2.1506	0.0010149	472.244997595782	30.473	0.7213	30.323	29.835	30.556	-0.14952					23	16	2	0	0	0	0.024726	1	1861	1861		25.892	0	1	319530	+		18346	22985	12797	12823	20765	20765					0.014983396496063506
FVSVCTPLRT	10	Unmodified	_FVSVCTPLRT_					0	0	0			REV__nc|ENSG00000117322|P20023-2|CR2	REV__nc|ENSG00000117322|P20023-2|CR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.8042602539062	2	561.802434	1121.59032	0.7782	0.00043719	2.4524	0.0013778	3.2306	0.001815	561.8036701330465	19.529	0.6462	19.329	18.908	19.554	-0.2001					29	12	4	0	0	0	1.0002	1	425	425		45.972	1.5951	1	249390	+		18347	22339	12798	12824	20766	20766					0.034383586339799876
FVSVIYSCVK	10	Unmodified	_FVSVIYSCVK_					0	0	0		ENSG00000173175|ENST00000462833|ADCY5;nc|ENSG00000173175|O95622-2|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2626953125	2	572.807185	1143.59982	-0.019849	-1.137E-05	-1.3676	-0.00078338	-1.3875	-0.00079475	573.3071147652636	43.111	0.59423	42.999	42.693	43.288	-0.11253					27	15	3	0	0	0	0.03519	1	3935	3935		69.628	16.276	1	188710			18348	8349	12799	12825	20767	20767					0.0337612691951108
FVSVRQPLL	9	Unmodified	_FVSVRQPLL_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3229370117188	2	529.821484	1057.62842	0.021041	1.1148E-05	-2.0851	-0.0011047	-2.0641	-0.0010936	529.8219340844282	70.462	0.25343	70.462	70.316	70.569	0					7	5	2	0	0	0	0.024477	1	8507	8507		35.618	18.253	1	114230	+		18349	24236	12800	12826	20768	20768					0.10190612610949756
FVSVRQPLL	9	Unmodified	_FVSVRQPLL_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.821484	1057.62842	0.60456	0.00032031	0.35796	0.00018966	0.96252	0.00050997	529.8220826213516	70.943	0.13068	70.65	70.542	70.672	-0.29291	0.093954	0.0014529	NaN	35.618	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120570	+		18350	24236	12800	12826							0.10190612610949756
FVTFINALGGN	11	Unmodified	_FVTFINALGGN_					0	0	0			REV__ENST00000511526.5_1_3:128616515-128622914:+|nuORF	REV__ENST00000511526.5_1_3:128616515-128622914:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.8063354492188	2	576.806031	1151.59751	0.1317	7.5967E-05	0.18088	0.00010433	0.31258	0.0001803	576.8060987565209	74.336	0.46669	74.077	73.86	74.327	-0.25887					27	10	3	0	0	0	0.70358	1	9060	9060		63.534	8.7575	1	1389300	+		18351	27132	12801	12827	20769	20769					0.027774145060675437
FVTFLYQI	8	Unmodified	_FVTFLYQI_					0	0	0		ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2703857421875	2	515.784036	1029.55352	-0.73897	-0.00038115	-2.9396	-0.0015162	-3.6786	-0.0018974	516.2845750611958	50.53	1.3724	50.611	49.81	51.183	0.080994					69	22	5	0	0	0	0.027866	1	5302	5302		45.952	3.4775	1	3680400			18352	3280	12802	12828	20770	20770					0.039924300797110845
FVTFVLHTI	9	Unmodified	_FVTFVLHTI_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1;SLC43A1|p.L444F|1|0.37|ENSG00000149150|chr11:57489256-57489256|G/A|missense_variant	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7770385742188	2	538.810585	1075.60662	-0.91517	-0.00049311	-3.6093	-0.0019447	-4.5245	-0.0024378	538.8085173409613	57.293	0.59188	57.126	56.932	57.524	-0.1672					26	15	2	0	0	0	0.024457	1	6265	6265		37.159	5.2042	1	488830			18353	6067	12803	12829	20771	20771					0.07183807862361391
FVTGSIQCTT	10	Unmodified	_FVTGSIQCTT_					0	0	0			REV__ENST00000263694.8_1_1:31732485-31732845:-|nuORF	REV__ENST00000263694.8_1_1:31732485-31732845:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2738647460938	2	528.755149	1055.49575	-0.65649	-0.00034712	4.0373	0.0021348	3.3809	0.0017876	528.759081730245	92.007	0.57544	91.999	91.622	92.198	-0.0082932					20	13	2	0	0	0	0.03519	1	11591	11591		52.937	1.6012	1	83576	+		18354	29694	12804	12830	20772	20772					-0.029781999080114474
FVTLDKLTI	9	Unmodified	_FVTLDKLTI_					0	0	0			REV__ENST00000509867.6_1_4:73956671-73956746:-|nuORF	REV__ENST00000509867.6_1_4:73956671-73956746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2969970703125	2	525.3157	1048.61685	-1.1749	-0.0006172	0.045973	2.415E-05	-1.1289	-0.00059305	525.315338555036	80.663	1.2593	80.663	80.205	81.464	0					51	30	2	0	0	0	0.024344	1	10115	10115		64.207	12.872	1	203830	+		18355	34093	12805	12831	20773	20773					0.09448370796940253
FVTLGITT	8	Unmodified	_FVTLGITT_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.24627685546875	2	426.247286	850.48002	0.090279	3.8481E-05	-2.9325	-0.00125	-2.8422	-0.0012115	426.2459398709793	86.867	2.4687	86.822	85.947	88.415	-0.045105					139	58	5	0	0	0	1.0574	1	10849	10849		26.796	6.3143	1	11102000	+		18356	26921	12806	12832	20774	20774					0.04879881637236849
FVTLITGT	8	Unmodified	_FVTLITGT_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2463073730469	2	426.247286	850.48002	0.090279	3.8481E-05	-2.9325	-0.00125	-2.8422	-0.0012115	426.2459398709793	86.867	2.4687	86.822	85.947	88.415	-0.045105					139	58	5	0	0	0	1.0572	1	10881	10881		28.254	0	1	11102000			18357	6775	12807	12833	20775	20775					0.04879881637236849
FVTLITGT	8	Unmodified	_FVTLITGT_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.24615478515625	2	426.247286	850.48002	0.26941	0.00011483	-3.1272	-0.001333	-2.8578	-0.0012181	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	1.0572	1	10549	10549		28.254	0	1	14269000			18358	6775	12807	12833	20776	20776					0.04879881637236849
FVTLTLLLN	9	Unmodified	_FVTLTLLLN_					0	0	0			REV__nc|ENSG00000110436|P43004-3|SLC1A2	REV__nc|ENSG00000110436|P43004-3|SLC1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2744140625	2	517.318243	1032.62193	-0.63041	-0.00032612	-3.5561	-0.0018397	-4.1866	-0.0021658	517.315350637581	45.392	0.17173	45.392	45.342	45.514	0					6	4	2	0	0	0	0.024405	1	4418	4418		35.618	8.9254	1	56326	+		18359	21858	12808	12834	20777	20777					0.10692674659594559
FVTLVAFLI	9	Unmodified	_FVTLVAFLI_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.76251220703125	2	511.817879	1021.6212	0.4195	0.00021471	3.5225	0.0018029	3.942	0.0020176	511.82133394783875	95.054	0.69578	94.931	94.77	95.465	-0.12251					20	15	2	0	0	0	0.024466	1	11731	11731		33.516	13.034	1	51312	+		18360	28400;24120	12809	12835	20778	20778					0.11125880010524725
FVTLVAFLI	9	Unmodified	_FVTLVAFLI_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.817879	1021.6212	-0.37098	-0.00018987	6.572	0.0033637	6.201	0.0031738	511.8215452663935	95.286	0.90343	95.286	94.702	95.605	0	0.13195	-0.00014102	NaN	33.516	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153390	+		18361	28400;24120	12809	12835							0.11125880010524725
FVTLVAFLI	9	Unmodified	_FVTLVAFLI_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.817879	1021.6212	-0.02994	-1.5324E-05	7.0883	0.0036279	7.0584	0.0036126	511.82137103903557	95.3	0.60332	95.304	94.966	95.569	0.0041122	0.14969	0.0003875	NaN	33.516	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197880	+		18362	28400;24120	12809	12835							0.11125880010524725
FVTLVAFLI	9	Unmodified	_FVTLVAFLI_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.817879	1021.6212	-0.26902	-0.00013769	4.6965	0.0024038	4.4275	0.0022661	511.8213997737868	95.232	0.91413	95.096	94.638	95.552	-0.13689	-0.058752	-0.0020608	NaN	33.516	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59090	+		18363	28400;24120	12809	12835							0.11125880010524725
FVTPTYSEP	9	Unmodified	_FVTPTYSEP_					0	0	0			REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	REV__ENST00000533360.2_1_11:66824373-66837783:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2590942382812	2	520.75039	1039.48623	-0.60784	-0.00031653	3.2359	0.0016851	2.6281	0.0013686	520.752102264078	84.749	0.45692	84.775	84.579	85.036	0.025536					14	10	2	0	0	0	0.024506	1	10577	10577		30.504	13.799	1	63942	+		18364	26744	12810	12836	20779	20779					-0.03193644921907435
FVTVEELL	8	Unmodified	_FVTVEELL_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1;TCP11L1|p.D161Ifs*4|1|0.15|ENSG00000176148|chr11:33057981-33057981|G/-|frameshift_variant	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2540283203125	2	475.265676	948.516799	0.073	3.4694E-05	-2.6767	-0.0012721	-2.6037	-0.0012374	475.2642600259022	27	0.35563	26.987	26.745	27.101	-0.012983					14	8	2	0	0	0	0.027866	1	1390	1390		13.775	0	1	46995			18365	8614	12811	12837	20780	20780					0.04048133463152226
FVTVLFSLV	9	Unmodified	_FVTVLFSLV_					0	0	0		ENST00000556166.2_1_15:26870131-26874253:-|nuORF	ENST00000556166.2_1_15:26870131-26874253:-|nuORF	ENST00000556166.2_1_15:26870131-26874253:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.8057250976562	2	512.807511	1023.60047	0.52576	0.00026961	-4.4366	-0.0022751	-3.9108	-0.0020055	512.8050805334625	70.685	1.3208	70.685	70.397	71.718	0					56	32	4	0	0	0	0.64155	1	8535	8535		50.025	0	1	1176000			18366	16702	12812	12838	20781	20781					0.08961289630849478
FVTVRVKT	8	Unmodified	_FVTVRVKT_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2010192871094	2	475.295102	948.575651	-1.0554	-0.00050165	1.6128	0.00076657	0.55739	0.00026492	475.29578755254533	40.396	0.37444	40.166	39.968	40.343	-0.23021					13	9	2	0	0	0	0.027866	1	3473	3473		17.365	5.8539	1	197110			18367	2071	12813	12839	20782	20782					0.09930654548145412
FVVAILAFY	9	Unmodified	_FVVAILAFY_					0	0	0			REV__ENSG00000117479|ENST00000236137|SLC19A2	REV__ENSG00000117479|ENST00000236137|SLC19A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7474365234375	2	521.802229	1041.5899	-0.51497	-0.00026871	3.3904	0.0017691	2.8754	0.0015004	521.8038247729627	37.096	0.46581	36.877	36.686	37.152	-0.2195					19	11	2	0	0	0	0.024289	1	2947	2947		29.842	0	1	271120	+		18368	22347	12814	12840	20783	20783					0.07077306976430009
FVVATKGSETA	11	Unmodified	_FVVATKGSETA_					0	0	0			REV__nc|ENSG00000139287|Q8IWU9-2|TPH2	REV__nc|ENSG00000139287|Q8IWU9-2|TPH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.3057250976562	2	555.295496	1108.57644	-0.34062	-0.00018914	-1.3303	-0.00073874	-1.671	-0.00092788	555.2949854189462	75.638	0.5963	75.366	75.103	75.699	-0.27266					22	14	2	0	0	0	0.024752	1	8967	8967		32.812	2.4947	1	154400	+		18369	23930	12815	12841	20784	20784					0.02649404406542999
FVVCAGYIL	9	Unmodified	_FVVCAGYIL_					0	0	0			REV__ENST00000488609.5_1_1:155108387-155108853:+|nuORF	REV__ENST00000488609.5_1_1:155108387-155108853:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7855224609375	2	492.764789	983.515025	0.643	0.00031685	2.5977	0.0012801	3.2407	0.0015969	492.76579115842975	77.994	1.8214	77.752	77.19	79.012	-0.24232					132	42	4	0	0	0	0.024289	1	9311	9311		60.404	13.637	1	915120	+		18370	26341	12816	12842	20785	20785					0.022608011735542277
FVVETFVC	8	Unmodified	_FVVETFVC_					0	0	0			REV__ENST00000487519.5_1_10:60145183-60146060:+|nuORF	REV__ENST00000487519.5_1_10:60145183-60146060:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2504577636719	2	472.233322	942.45209	0.23643	0.00011165	0.5493	0.0002594	0.78573	0.00037105	472.23351850182866	24.206	0.44495	23.991	23.689	24.134	-0.2151					23	9	3	0	0	0	0.027866	1	1040	1040		14.664	0.88877	1	291750	+		18371	33610	12817	12843	20786	20786					-0.021437646144931932
FVVGTKKI	8	Unmodified	_FVVGTKKI_					0	0	0			REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.75836181640625	2	446.286746	890.558939	0.31316	0.00013976	0.060605	2.7047E-05	0.37377	0.00016681	446.2865889866659	51.34	0.84735	51.34	50.956	51.803	0					40	23	2	0	0	0	0.027866	1	5488	5488		23.042	4.7181	1	223970	+		18372	22191	12818	12844	20787	20787					0.1092815366217792
FVVHEFVIV	9	Unmodified	_FVVHEFVIV_					0	0	0			REV__ENSG00000146205|ENST00000674324|ANO7	REV__ENSG00000146205|ENST00000674324|ANO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2890625	2	544.810585	1087.60662	-1.2274	-0.00066872	-0.30786	-0.00016772	-1.5353	-0.00083645	544.8102916835799	50.681	0.78609	50.762	50.51	51.296	0.080994					41	21	3	0	0	0	0.023355	1	5287	5287		76.847	8.0598	1	823270	+		18373	24467	12819	12845	20788	20788					0.06631807862368078
FVVIFITY	8	Unmodified	_FVVIFITY_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2890625	2	501.288954	1000.56336	-0.41084	-0.00020595	3.1992	0.0016037	2.7884	0.0013978	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	1.0572	1	10428	10428		28.254	2.6802	1	2038300			18374	10139	12820	12846	20789	20789					0.06309618085083457
FVVIFITY	8	Unmodified	_FVVIFITY_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2906494140625	2	501.288954	1000.56336	0.66236	0.00033203	2.348	0.001177	3.0104	0.0015091	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	1.0472	1	10022	10022		29.842	2.7942	1	3151900			18375	10139	12820	12846	20790	20790					0.06309618085083457
FVVIGDEGSSQ	11	Unmodified	_FVVIGDEGSSQ_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.276611328125	2	569.274761	1136.53497	-1.0327	-0.00058791	4.1504	0.0023627	3.1177	0.0017748	569.2769368352411	79.556	2.6287	79.556	79.201	81.83	0					198	63	4	0	0	0	0.79111	1	9972	9972		58.23	8.6939	1	2608600	+		18376	23521	12821	12847	20791	20791					-0.027837763527941206
FVVIVRKGD	9	Unmodified	_FVVIVRKGD_					0	0	0			REV__nc|ENSG00000164045|P30304-2|CDC25A	REV__nc|ENSG00000164045|P30304-2|CDC25A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8009643554688	2	516.813659	1031.61277	-0.050005	-2.5843E-05	0.45385	0.00023456	0.40384	0.00020871	517.3157825781888	36.724	0.30328	36.724	36.543	36.846	0					12	7	2	0	0	0	0.024381	1	2955	2955		29.15	2.4566	1	46087	+		18377	25676	12822	12848	20792	20792					0.09822326093922129
FVVLALLNL	9	Unmodified	_FVVLALLNL_					0	0	0			REV__nc|ENSG00000126251|O15529|GPR42	REV__nc|ENSG00000126251|O15529|GPR42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7905578613281	2	501.323328	1000.6321	0.40565	0.00020336	-0.56476	-0.00028313	-0.15912	-7.9768E-05	501.3254578538519	86.878	0.12395	86.878	86.775	86.899	0					4	2	2	0	0	0	0.024412	1	10913	10913		17.365	0	1	12613	+		18378	22887	12823	12849	20793	20793					0.13181282384800852
FVVLLLRET	9	Unmodified	_FVVLLLRET_					0	0	0			REV__WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	REV__WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3164672851562	2	545.336967	1088.65938	-0.62659	-0.0003417	1.3287	0.00072456	0.70206	0.00038286	545.8397998680805	89.649	0.20663	89.663	89.591	89.798	0.013443					5	4	2	0	0	0	0.024535	1	11255	11255		3.41	0	1	54197	+		18379	26013	12824	12850	20794	20794					0.11859765925169086
FVVLLLRVS	9	Unmodified	_FVVLLLRVS_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2576293945312	2	523.342052	1044.66955	-0.33388	-0.00017474	0.45065	0.00023585	0.11677	6.111E-05	523.3405944934179	23.535	0.21542	23.611	23.518	23.734	0.076239					6	4	2	0	0	0	0.024541	1	882	882		25.45	2.4077	1	21579			18380	8927	12825	12851	20795	20795					0.14900373650425536
FVVLNRGKT	9	Unmodified	_FVVLNRGKT_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.783203125	2	517.311284	1032.60801	-0.16032	-8.2934E-05	-0.12941	-6.6943E-05	-0.28972	-0.00014988	517.3109372162709	42.281	0.71822	42.05	41.761	42.48	-0.2303					36	19	3	0	0	0	0.024381	1	3774	3774		55.504	13.108	1	1685600			18381	18631	12826	12852	20796	20796					0.09301441951151901
FVVLNRGKT	9	Unmodified	_FVVLNRGKT_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.311284	1032.60801	-0.2519	-0.00013031	0.20866	0.00010794	-0.043239	-2.2368E-05	517.3110759876147	42.031	0.84777	41.908	41.642	42.49	-0.12299	-0.085295	0.00012877	NaN	42.396	47	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1849900			18382	18631	12826	12852							0.09301441951151901
FVVLSRPPRP	10	Unmodified	_FVVLSRPPRP_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.3565063476562	2	584.353483	1166.69241	0.76767	0.00044859	3.8888	0.0022724	4.6565	0.002721	584.3557035970963	91.011	2.7107	91.023	89.922	92.633	0.011276					144	65	3	0	0	0	1.1267	1	11449	11449		29.15	4.9468	1	679170	+		18383	21428	12827	12853	20797	20797					0.11573392767877522
FVVLWPLL	8	Unmodified	_FVVLWPLL_					0	0	0			REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7641906738281	2	493.807314	985.600075	1.3834	0.00068314	-4.459	-0.0022019	-3.0756	-0.0015187	493.8043991699925	74.555	0.77942	74.555	74.256	75.036	0					42	18	3	0	0	0	0.027866	1	9103	9103		24.504	0	1	192020	+		18384	34963	12828	12854	20798	20798					0.10669914701668404
FVVRSKVNI	9	Unmodified	_FVVRSKVNI_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2747192382812	2	531.326934	1060.63931	-0.3753	-0.00019941	0.4036	0.00021444	0.028299	1.5036E-05	531.3269909052609	50.414	0.89945	50.263	49.96	50.859	-0.1512					51	26	3	0	0	0	0.024487	1	5201	5201		17.365	0	1	1957300			18385	3982	12829	12855	20799	20799					0.11142014985239257
FVVVLAPVL	9	Unmodified	_FVVVLAPVL_					0	0	0			REV__ENSG00000168538|ENST00000334690|TRAPPC11	REV__ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7588806152344	2	478.812596	955.61064	0.24916	0.0001193	3.5556	0.0017025	3.8048	0.0018218	478.81384514785736	33.912	0.15482	33.912	33.777	33.932	0					6	3	2	0	0	0	0.024389	1	2471	2471		39.021	9.18	1	46315	+		18386	26272	12830	12856	20800	20800					0.13105897356092555
FVVVWSRDV	9	Unmodified	_FVVVWSRDV_					0	0	0		ENST00000454402.6_1_12:118469222-118469318:+|nuORF	ENST00000454402.6_1_12:118469222-118469318:+|nuORF	ENST00000454402.6_1_12:118469222-118469318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8246459960938	2	553.803291	1105.59203	-0.675	-0.00037382	-0.32171	-0.00017816	-0.99671	-0.00055198	553.8035707080033	75.158	0.3177	75.158	74.914	75.232	0					10	7	2	0	0	0	0.024344	1	9228	9228		45.972	13.16	1	76719			18387	14564	12831	12857	20801	20801					0.0434573571421879
FVVYKNIV	8	Unmodified	_FVVYKNIV_					0	0	0		ENST00000527206.1_1_11:118992311-118998053:+|nuORF	ENST00000527206.1_1_11:118992311-118998053:+|nuORF	ENST00000527206.1_1_11:118992311-118998053:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7818298339844	2	491.292028	980.569503	-0.55471	-0.00027253	0.59176	0.00029073	0.037051	1.8203E-05	491.2913786217359	63.054	0.41039	62.815	62.615	63.025	-0.23926					19	9	3	0	0	0	0.027866	1	7302	7302		54.765	11.139	1	536180			18388	16142	12832	12858	20802	20802					0.07844136316612094
FVVYKNIV	8	Unmodified	_FVVYKNIV_					0	0	0		ENST00000527206.1_1_11:118992311-118998053:+|nuORF	ENST00000527206.1_1_11:118992311-118998053:+|nuORF	ENST00000527206.1_1_11:118992311-118998053:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.292028	980.569503	0.23729	0.00011658	-0.846	-0.00041564	-0.60872	-0.00029906	491.29122495692275	63.102	0.41619	62.844	62.706	63.122	-0.25824	0.014465	-0.00043021	NaN	60.294	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249300			18389	16142	12832	12858							0.07844136316612094
FVVYMMRA	8	Unmodified	_FVVYMMRA_					0	0	0			REV__ENSG00000214654|ENST00000689072|B3GALT9	REV__ENSG00000214654|ENST00000689072|B3GALT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2726135253906	2	508.756441	1015.49833	0.44453	0.00022616	2.3952	0.0012186	2.8397	0.0014447	508.757557803089	51.008	0.82562	50.827	50.317	51.143	-0.18071					36	21	2	0	0	0	0.027866	1	5131	5131		13.775	0	1	554490	+		18390	28782	12833	12859	20803	20803					-0.008800229840517204
FVWAEELKI	9	Unmodified	_FVWAEELKI_					0	0	0			REV__ENST00000496906.1_1_9:35750742-35753913:+|nuORF	REV__ENST00000496906.1_1_9:35750742-35753913:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3088989257812	2	567.813325	1133.6121	-0.73961	-0.00041996	-3.8697	-0.0021973	-4.6093	-0.0026172	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.091713	3	8364	8352;8364;8375		113.41	14.037	1	14091000	+		18391	33839	12834	12860	20804;20805;20806	20805					0.050634866541713563
FVWAEELKI	9	Unmodified	_FVWAEELKI_					0	0	0			REV__ENST00000496906.1_1_9:35750742-35753913:+|nuORF	REV__ENST00000496906.1_1_9:35750742-35753913:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3087158203125	2	567.813325	1133.6121	-1.1634	-0.00066059	-3.5077	-0.0019917	-4.6711	-0.0026523	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.11092	1	8297	8297		108.09	20.391	1	13770000	+		18392	33839	12834	12860	20807	20807					0.050634866541713563
FVWGLLLT	8	Unmodified	_FVWGLLLT_					0	0	0			REV__ENST00000480356.1_1_1:95006521-95007279:-|nuORF	REV__ENST00000480356.1_1_1:95006521-95007279:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.24957275390625	2	474.781296	947.54804	0.90432	0.00042935	-4.0671	-0.001931	-3.1628	-0.0015017	474.77919166397254	48.939	1.186	48.939	48.619	49.805	0					70	32	4	0	0	0	0.027866	1	5119	5119		37.028	5.0736	1	1860600	+		18393	22352	12835	12861	20808	20808					0.07216751287887746
FVWRNCGM	8	Unmodified	_FVWRNCGM_					0	0	0		ENST00000393066.7_1_17:57168694-57181751:-|nuORF	ENST00000393066.7_1_17:57168694-57181751:-|nuORF	ENST00000393066.7_1_17:57168694-57181751:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.75836181640625	2	506.728215	1011.44188	-0.87696	-0.00044438	-3.1183	-0.0015801	-3.9953	-0.0020245	506.7268321549826	27.608	0.38	27.44	27.23	27.61	-0.16816					13	8	2	0	0	0	0.027866	1	1528	1528		39.021	19.918	1	40168			18394	13438	12836	12862	20809	20809					-0.06338650820725888
FVYFVLAGI	9	Unmodified	_FVYFVLAGI_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|31|2|anti-sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|31|2|anti-sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|31|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7493286132812	2	514.794404	1027.57425	-1.1134	-0.00057319	-0.11081	-5.7043E-05	-1.2242	-0.00063023	514.7939902239887	79.984	1.6668	79.817	79.155	80.822	-0.16714					54	39	2	0	0	0	0.024475	1	9937	9937		29.842	9.3597	1	134640			18395	17824	12837	12863	20810	20810					0.06157020459386331
FVYQIPRRIFI	11	Unmodified	_FVYQIPRRIFI_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.3011169433594	3	484.62224	1450.84489	2.3098	0.0011194	1.102	0.00053407	3.4118	0.0016535	484.62304273584004	19.087	0.29603	18.853	18.731	19.027	-0.23345					6	5	2	0	0	0	0.024876	1	353	353		13.508	7.8092	1	13991			18396	9598	12838	12864	20811	20811					0.13750168444653355
FVYQIPRRIFI	11	Unmodified	_FVYQIPRRIFI_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-5|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	484.62224	1450.84489	0.60108	0.0002913	1.8928	0.00091728	2.4938	0.0012086	484.95729417954846	19.028	0.24656	18.868	18.738	18.984	-0.16079	0.0071387	0.00063105	NaN	13.508	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9198			18397	9598	12838	12864							0.13750168444653355
FVYSLLSVF	9	Unmodified	_FVYSLLSVF_					0	0	0		GPR45|p.S284F|1|0.22|ENSG00000135973|chr2:105242709-105242709|C/T|missense_variant	GPR45|p.S284F|1|0.22|ENSG00000135973|chr2:105242709-105242709|C/T|missense_variant	GPR45|p.S284F|1|0.22|ENSG00000135973|chr2:105242709-105242709|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2818603515625	2	537.797143	1073.57973	-0.79703	-0.00042864	-3.1975	-0.0017196	-3.9945	-0.0021482	537.7957841617139	65.063	0.4851	64.828	64.607	65.092	-0.2345					19	11	2	0	0	0	0.024466	1	7425	7425		18.324	0.95945	1	425550			18398	17690	12839	12865	20812	20812					0.04588699251212347
FVYTFMKDAY	10	Unmodified	_FVYTFMKDAY_					0	0	0			REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__nc|ENSG00000183873|Q14524-5|SCN5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.8705139160156	3	428.870492	1283.58965	-0.014633	-6.2758E-06	-0.25348	-0.00010871	-0.26811	-0.00011499	428.87047733430035	36.788	1.6975	36.572	36.205	37.903	-0.21661					123	43	4	0	0	0	1.1081	1	2919	2919		31.634	0.56612	1	11744000	+		18399	27620	12840	12866	20813	20813					-0.04080480805714615
FVYVMTGL	8	Unmodified	_FVYVMTGL_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2869873046875	2	465.243689	928.472826	-0.010674	-4.9659E-06	-1.1955	-0.00055619	-1.2062	-0.00056116	465.243221310218	75.48	0.20937	75.208	75.018	75.227	-0.27266					7	4	2	0	0	0	0.027866	1	8893	8893		21.702	8.7432	1	174840	+		18400	27972	12841	12867	20814	20814					0.005728257651526292
FVYVPITI	8	Unmodified	_FVYVPITI_					0	0	0			REV__nc|ENSG00000255072|Q3MUY2|PIGY	REV__nc|ENSG00000255072|Q3MUY2|PIGY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7929382324219	2	476.281129	950.547705	0.43776	0.00020849	0.53288	0.0002538	0.97063	0.00046229	476.28090634432874	50.251	0.20054	50.099	49.96	50.16	-0.1512					6	5	2	0	0	0	0.027866	1	5200	5200		39.021	17.319	1	88792	+		18401	37173	12842	12868	20815	20815					0.07045331568031088
FWHAATKGILV	11	Unmodified	_FWHAATKGILV_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.9058532714844	3	414.904636	1241.69208	-0.045225	-1.8764E-05	2.454	0.0010182	2.4088	0.00099942	414.9057411520974	21.247	1.3484	21.157	20.766	22.115	-0.090094					99	27	6	0	0	0	1.0022	1	620	620		36.318	4.2835	1	3818100			18402	6631	12843	12869	20816	20816					0.08089973048026877
FWKRITHRFYM	11	Unmodified	_FWKRITHRFYM_					0	0	0			REV__ENST00000511884.6_2_4:31144777-31144999:+|nuORF	REV__ENST00000511884.6_2_4:31144777-31144999:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.9475708007812	3	528.946729	1583.81836	5.5752	0.002949	2.4074	0.0012734	7.9826	0.0042224	528.9479740128894	16.831	0.26423	16.577	16.456	16.72	-0.25378					21	8	4	0	0	0	1.1135	1	96	96		3.6191	0.21035	1	36809	+		18403	34128	12844	12870	20817	20817					0.0498015628165831
FWKRITHRFYM	11	Unmodified	_FWKRITHRFYM_					0	0	0			REV__ENST00000511884.6_2_4:31144777-31144999:+|nuORF	REV__ENST00000511884.6_2_4:31144777-31144999:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	528.946729	1583.81836	-0.50589	-0.00026759	7.4475	0.0039393	6.9416	0.0036717	528.950632391111	16.752	0.34314	16.544	16.418	16.762	-0.20777	-0.016303	0.0038972	NaN	3.6191	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33155	+		18404	34128	12844	12870							0.0498015628165831
FWLAPTLSF	9	Unmodified	_FWLAPTLSF_					0	0	0			REV__ENST00000485694.1_1_2:15307174-15319276:-|nuORF	REV__ENST00000485694.1_1_2:15307174-15319276:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.29052734375	2	541.289485	1080.56442	-0.31231	-0.00016905	2.0326	0.0011002	1.7203	0.00093118	541.2904750181538	18.212	0.83672	18.08	17.663	18.499	-0.13147					28	16	2	0	0	0	0.67308	1	245	245		47.916	12.297	1	239570	+		18405	33565	12845	12871	20818	20818					0.027358324540045942
FWTGAFTASF	10	Unmodified	_FWTGAFTASF_					0	0	0			REV__ENSG00000177807|ENST00000644903|KCNJ10	REV__ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.763427734375	2	567.766374	1133.5182	-1.6591	-0.00094199	-2.7055	-0.0015361	-4.3646	-0.0024781	567.7646856215697	20.679	0.72632	20.679	20.42	21.146	0					35	14	3	0	0	0	1.0142	1	566	566		44.117	3.5442	1	352450	+		18406	27145	12846	12872	20819	20819					-0.0432223244808938
FYDLVFSL	8	Unmodified	_FYDLVFSL_					0	0	0			REV__ENST00000511019.1_1_5:14480069-14481814:+|nuORF	REV__ENST00000511019.1_1_5:14480069-14481814:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2909851074219	2	502.260394	1002.50623	0.22286	0.00011193	-1.9672	-0.00098803	-1.7443	-0.0008761	502.7624084354248	84.607	0.21027	84.469	84.323	84.533	-0.13789					6	4	2	0	0	0	0.027866	1	10228	10228		35.201	31.215	1	57571	+		18407	34114	12847	12873	20820	20820					0.005081508087073416
FYDVCAVL	8	Unmodified	_FYDVCAVL_					0	0	0			REV__ENST00000482378.6_2_12:56226934-56227222:+|nuORF	REV__ENST00000482378.6_2_12:56226934-56227222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.255859375	2	465.225497	928.43644	0.95828	0.00044582	3.6229	0.0016855	4.5812	0.0021313	465.2271046445937	37.011	0.65638	37.011	36.613	37.269	0					49	16	5	0	0	0	0.027866	1	2972	2972		37.028	0	1	1381100	+		18408	33482	12848	12874	20821	20821					-0.030640511315596086
FYDYYSVYR	9	Unmodified	_FYDYYSVYR_					0	0	0			REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	638.2875366210938	2	638.287671	1274.56079	5.2086	0.0033246	-3.2271	-0.0020598	1.9815	0.0012648	638.2855148060747	16.54	0.29419	16.286	16.162	16.456	-0.25378					18	11	2	0	0	0	1.0192	1	67	67		16.473	0	1	42929	+		18409	20620	12849	12875	20822	20822					-0.06550882110536804
FYDYYSVYR	9	Unmodified	_FYDYYSVYR_					0	0	0			REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	638.287671	1274.56079	5.2086	0.0033246	-3.2271	-0.0020598	1.9815	0.0012648	638.2855148060747	16.54	0.29419	16.286	16.162	16.456	-0.25378	-0.090058	-0.0007563	NaN	16.473	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42929	+		18410	20620	12849	12875							-0.06550882110536804
FYELHNLS	8	Unmodified	_FYELHNLS_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.75482177734375	2	511.750724	1021.4869	-0.33609	-0.00017199	-0.5113	-0.00026166	-0.84739	-0.00043365	511.7503823688274	37.11	0.87278	37.142	36.878	37.751	0.032269					34	22	2	0	0	0	0.027866	1	3007	3007		30.504	0	1	1305300	+		18411	26862	12850	12876	20823	20823					-0.022988054821894366
FYEPSKDE	8	Unmodified	_FYEPSKDE_					0	0	0			REV__nc|ENSG00000134198|O60636-2|TSPAN2	REV__nc|ENSG00000134198|O60636-2|TSPAN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7243347167969	2	507.724372	1013.43419	-0.25819	-0.00013109	0.38288	0.0001944	0.12469	6.331E-05	507.724477924778	17.909	0.54706	17.702	17.464	18.011	-0.20669					17	10	2	0	0	0	1.0516	1	234	234		29.15	0	1	68028	+		18412	23425	12851	12877	20824	20824					-0.07198808335658669
FYFAQIGLTTS	11	Unmodified	_FYFAQIGLTTS_					0	0	0			REV__ZNF780A|p.E114Q|1|0.7|ENSG00000197782|chr19:40076102-40076102|C/G|missense_variant	REV__ZNF780A|p.E114Q|1|0.7|ENSG00000197782|chr19:40076102-40076102|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8949279785156	3	416.548406	1246.62339	0.12671	5.2782E-05	-2.4923	-0.0010382	-2.3656	-0.00098539	416.8803194860616	30.31	0.20329	30.161	30.056	30.259	-0.14952					7	4	2	0	0	0	0.02476	1	1915	1915		61.765	29.73	1	22999	+		18413	37822	12852	12878	20825	20825					0.009942639576365764
FYFYFFGNG	9	Unmodified	_FYFYFFGNG_					0	0	0		ENST00000502913.1_1_4:89394186-89425581:+|nuORF	ENST00000502913.1_1_4:89394186-89425581:+|nuORF	ENST00000502913.1_1_4:89394186-89425581:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	581.2766723632812	2	581.255643	1160.49673	-0.71326	-0.00041459	3.6943	0.0021473	2.981	0.0017327	582.2612304534845	86.45	0.52085	86.405	86.033	86.554	-0.045105					20	11	3	0	0	0	0.024443	1	10828	10828		44.531	13.001	1	51475			18414	15679	12853	12879	20826	20826					-0.07709617476803032
FYFYLFLVV	9	Unmodified	_FYFYLFLVV_					0	0	0			REV__ENST00000367128.7_1_1:206154210-206154282:+|nuORF	REV__ENST00000367128.7_1_1:206154210-206154282:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	605.306396484375	2	605.830986	1209.64742	-0.61332	-0.00037157	2.7518	0.0016671	2.1385	0.0012956	605.833135291868	61.523	0.41385	61.266	61.091	61.505	-0.25725					12	9	2	0	0	0	0.024475	1	6879	6879		39.021	9.8719	1	122970	+		18415	31004	12854	12880	20827	20827					0.050981491819584335
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2869567871094	2	491.279452	980.544351	1.2048	0.00059191	-0.8563	-0.00042068	0.34853	0.00017122	491.2788233303317	59.464	1.0741	59.464	59.182	60.256	0					66	28	4	0	0	0	0.37125	2	6795	6795;6808		101.21	44.491	1	3647500			18416	10867	12855	12881	20828;20829	20828					0.05330081514034646
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.30426025390625	2	491.279452	980.544351	0.0096534	4.7425E-06	0.182	8.9413E-05	0.19165	9.4155E-05	491.2794186167786	59.284	0.99559	59.37	59.099	60.095	0.085682					58	26	3	0	0	0	0.027866	1	6678	6678		114.59	59.691	1	3397500			18417	10867	12855	12881	20830	20830					0.05330081514034646
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.2794189453125	2	491.279452	980.544351	0.5122	0.00025164	-0.7945	-0.00039032	-0.2823	-0.00013869	491.2790077124386	59.677	1.531	59.48	59.173	60.704	-0.19742					89	38	3	0	0	0	0.37125	4	6584	6584;6593;6606;6619		101.21	53.554	1	6382400			18418	10867	12855	12881	20831;20832;20833;20834	20831					0.05330081514034646
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.2791748046875	2	491.279452	980.544351	0.6744	0.00033132	-0.95899	-0.00047113	-0.28458	-0.00013981	491.2788908365159	59.557	1.2025	59.381	59.078	60.28	-0.1761					79	30	3	0	0	0	0.37125	4	6575	6575;6586;6598;6614		101.21	48.912	1	6379800			18419	10867	12855	12881	20835;20836;20837;20838	20835					0.05330081514034646
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.27947998046875	2	491.279452	980.544351	0.28446	0.00013975	-0.61277	-0.00030104	-0.32831	-0.00016129	491.27906813528216	59.686	1.1281	59.438	59.13	60.258	-0.24842					70	28	3	0	0	0	0.29372	5	6587	6578;6587;6599;6611;6627		114.59	55.239	1	5989300			18420	10867	12855	12881	20839;20840;20841;20842;20843	20840					0.05330081514034646
FYGLLRANN	9	Unmodified	_FYGLLRANN_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000550865.1_1_12:76784181-76788455:-|nuORF	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2843627929688	2	534.285266	1066.55598	0.071867	3.8398E-05	-1.322	-0.00070631	-1.2501	-0.00066791	534.2847734562439	105.72	0.98301	105.72	105.41	106.39	0					83	35	3	0	0	0	0.67308	1	13579	13579		47.916	5.4411	1	282140			18421	1949	12856	12882	20844	20844					0.025362785373545194
FYGLRYLI	8	Unmodified	_FYGLRYLI_					0	0	0			REV__ENSG00000183891|ENST00000333610|TTC32	REV__ENSG00000183891|ENST00000333610|TTC32	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7964477539062	2	522.797478	1043.5804	-0.042549	-2.2245E-05	-1.4766	-0.00077199	-1.5192	-0.00079423	522.7967223459124	39.042	2.5625	38.817	37.785	40.347	-0.2257					174	69	4	0	0	0	0.9224	1	3288	3288		49.211	10.189	1	2377000	+		18422	27623	12857	12883	20845	20845					0.060355386908895525
FYGPVLLLL	9	Unmodified	_FYGPVLLLL_					0	0	0			REV__ENSG00000167850|ENST00000330793|CD300C	REV__ENSG00000167850|ENST00000330793|CD300C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.8193359375	2	517.817879	1033.6212	-0.13475	-6.9778E-05	2.8426	0.001472	2.7079	0.0014022	517.8191984377918	91.962	1.0921	91.84	91.372	92.464	-0.12242					80	25	5	0	0	0	0.93795	1	11303	11303		29.842	0	1	1129300	+		18423	26198	12858	12884	20846	20846					0.10573880010520043
FYHRWLLG	8	Unmodified	_FYHRWLLG_					0	0	0		ENST00000560777.5_1_14:24738065-24739201:-|nuORF;ENST00000543002.5_1_14:24737570-24740321:-|nuORF;ENST00000560998.5_1_14:24737570-24740321:-|nuORF;ENSG00000100949|ENST00000216840|RABGGTA	ENST00000560777.5_1_14:24738065-24739201:-|nuORF	ENST00000560777.5_1_14:24738065-24739201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3169555664062	2	546.292894	1090.57123	0.092077	5.0301E-05	1.5123	0.00082617	1.6044	0.00087648	546.2942841567394	88.041	0.46661	87.91	87.687	88.153	-0.13135					13	11	2	0	0	0	0.027866	1	10758	10758		39.021	7.0666	1	131970			18424	2264	12859	12885	20847	20847					0.02957190125221132
FYIPLAVIL	9	Unmodified	_FYIPLAVIL_					0	0	0		ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant;ENSG00000170214|ENST00000306675|ADRA1B	ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant	ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.8273315429688	2	524.825704	1047.63685	1.1502	0.00060363	0.89043	0.00046732	2.0406	0.001071	524.8260243870249	98.019	1.8552	97.895	97.417	99.272	-0.12414					149	45	5	0	0	0	0.93795	1	12123	12123		29.842	3.0454	1	12738000			18425	40	12860	12886	20848	20848					0.1149416652756372
FYITNPKG	8	Unmodified	_FYITNPKG_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|87|2|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|87|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2958984375	2	470.25036	938.486168	4.1178	0.0019364	1.1566	0.00054388	5.2744	0.0024803	470.25164049104603	18.771	0.1957	18.834	18.698	18.893	0.063307					6	3	2	0	0	0	0.027866	1	286	286		35.618	17.294	1	7537.6	+		18426	36297	12861	12887	20849	20849					0.01446399868757453
FYIYYSLQ	8	Unmodified	_FYIYYSLQ_					0	0	0		ENST00000299638.7_2_15:58008553-58008757:+|nuORF	ENST00000299638.7_2_15:58008553-58008757:+|nuORF	ENST00000299638.7_2_15:58008553-58008757:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.7725219726562	2	548.771126	1095.5277	-0.75313	-0.0004133	4.1195	0.0022606	3.3663	0.0018474	548.7733241323286	35.731	0.86127	35.526	35.265	36.127	-0.20518					38	23	2	0	0	0	0.96719	1	2735	2735		42.474	5.3154	1	3416300			18427	11887	12862	12888	20850	20850					-0.016244641625689837
FYKEKKEILSL	11	Unmodified	_FYKEKKEILSL_					0	0	0		ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.60833740234375	3	466.606144	1396.7966	0.67563	0.00031525	3.4548	0.001612	4.1304	0.0019273	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0074	1	12469	12469		35.178	10.946	1	1258700			18428	5829	12863	12889	20851	20851					0.11407630014105052
FYKLLSITVRN	11	Unmodified	_FYKLLSITVRN_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9326477050781	3	451.934484	1352.78162	-0.17787	-8.0388E-05	-3.7049	-0.0016744	-3.8828	-0.0017548	451.9326727882281	97.157	2.1391	96.996	95.832	97.972	-0.16105					138	49	5	0	0	0	1.0712	1	12010	12010		19.263	2.7328	1	578610			18429	10867	12864	12890	20852	20852					0.1193418293673858
FYKTAEETF	9	Unmodified	_FYKTAEETF_					0	0	0			REV__ENSG00000128284|ENST00000424878|APOL3	REV__ENSG00000128284|ENST00000424878|APOL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3302612304688	2	568.268947	1134.52334	0.17797	0.00010113	-1.1076	-0.00062939	-0.92959	-0.00052826	568.7698745733292	93.238	0.39506	93.116	92.927	93.322	-0.12215					12	8	2	0	0	0	0.024447	1	11501	11501		40.778	21.418	1	56113	+		18430	22976	12865	12891	20853	20853					-0.038539733761581374
FYLATSPPDS	10	Unmodified	_FYLATSPPDS_					0	0	0		nc|ENSG00000132356|Q13131-2|PRKAA1;ENSG00000132356|ENST00000397128|PRKAA1	nc|ENSG00000132356|Q13131-2|PRKAA1	nc|ENSG00000132356|Q13131-2|PRKAA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.7728881835938	2	549.261122	1096.50769	-0.14151	-7.7725E-05	-1.3225	-0.00072639	-1.464	-0.00080411	549.2603208606253	35.873	0.58104	35.657	35.508	36.089	-0.21555					26	16	2	0	0	0	0.03519	1	2737	2737		29.15	0	1	447750			18431	4595	12866	12892	20854	20854					-0.03670259893192451
FYLDPVLK	8	Unmodified	_FYLDPVLK_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7702331542969	2	497.784036	993.553519	-0.019711	-9.812E-06	2.4298	0.0012095	2.4101	0.0011997	497.78527638102065	102.09	0.44168	102.09	101.95	102.39	0					13	9	2	0	0	0	0.027866	1	13096	13096		40.573	13.88	1	25904	+		18432	24952	12867	12893	20855	20855					0.05648430079713762
FYLDPVLK	8	Unmodified	_FYLDPVLK_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.784036	993.553519	-0.10706	-5.3292E-05	0.63218	0.00031469	0.52512	0.0002614	497.7849151328708	102.13	0.46439	102.13	101.86	102.33	0.0073471	0.021952	-0.0011523	NaN	40.573	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46770	+		18433	24952	12867	12893							0.05648430079713762
FYLILKKRM	9	Unmodified	_FYLILKKRM_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.3698120117188	2	606.370287	1210.72602	-2.2008	-0.0013345	0.97018	0.00058829	-1.2306	-0.00074623	606.3707256009532	92.689	2.8402	92.546	91.661	94.501	-0.14356					195	66	4	0	0	0	0.90698	1	11375	11375		31.955	4.0726	1	701690	+		18434	28189	12868	12894	20856	20856					0.12908678215421787
FYLMNWSSV	9	Unmodified	_FYLMNWSSV_					0	0	0			REV__ENST00000480042.5_1_20:45008831-45014791:-|nuORF	REV__ENST00000480042.5_1_20:45008831-45014791:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.7626342773438	2	573.76806	1145.52157	0.076641	4.3974E-05	3.8625	0.0022162	3.9391	0.0022601	573.7699312607568	72.368	0.37809	72.091	71.947	72.325	-0.2769					11	8	2	0	0	0	0.024523	1	8489	8489		29.15	18.284	1	69320	+		18435	33414	12869	12895	20857	20857					-0.0453730566575814
FYLMNWSSV	9	Unmodified	_FYLMNWSSV_					0	0	0			REV__ENST00000480042.5_1_20:45008831-45014791:-|nuORF	REV__ENST00000480042.5_1_20:45008831-45014791:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	573.76806	1145.52157	0.067007	3.8447E-05	7.011	0.0040227	7.078	0.0040611	573.7722415237328	72.153	0.26735	72.163	72.023	72.29	0.0097733	0.041257	0.0018054	NaN	15.642	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72895	+		18436	33414	12869	12895							-0.0453730566575814
FYLMNWSSV	9	Unmodified	_FYLMNWSSV_					0	0	0			REV__ENST00000480042.5_1_20:45008831-45014791:-|nuORF	REV__ENST00000480042.5_1_20:45008831-45014791:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	573.76806	1145.52157	-0.44386	-0.00025467	5.6444	0.0032385	5.2005	0.0029839	573.7711079923631	72.282	0.29099	72.084	71.829	72.12	-0.19811	-0.037413	0.00023719	NaN	15.642	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73619	+		18437	33414	12869	12895							-0.0453730566575814
FYLMPLGGLL	10	Unmodified	_FYLMPLGGLL_					0	0	0			REV__ENST00000304177.9_1_15:83669893-83670055:-|nuORF	REV__ENST00000304177.9_1_15:83669893-83670055:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2689819335938	2	562.314646	1122.61474	0.25615	0.00014404	-0.34654	-0.00019486	-0.090388	-5.0827E-05	562.3158977426799	79.942	0.21371	79.723	79.659	79.873	-0.21923					7	4	2	0	0	0	0.03519	1	9591	9591		35.201	10.682	1	53380	+		18438	30102	12870	12896	20858	20858					0.05833618787505657
FYLPNIGQ	8	Unmodified	_FYLPNIGQ_					0	0	0		ENST00000554129.1_1_14:50504772-50504928:-|nuORF	ENST00000554129.1_1_14:50504772-50504928:-|nuORF	ENST00000554129.1_1_14:50504772-50504928:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	476.251220703125	2	476.25036	950.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.14	1	100.97	100.47	101.47	-0.17178								0	0	0	0.86453	1	12541	12541		29.842	1.5873	1				18439	16649	12871	12897	20859	20859					0.008943998687414023
FYLQLDLD	8	Unmodified	_FYLQLDLD_					0	0	0		ENST00000390341.2_1_7:38339574-38339811:-|nuORF	ENST00000390341.2_1_7:38339574-38339811:-|nuORF	ENST00000390341.2_1_7:38339574-38339811:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7879638671875	2	513.760758	1025.50696	-0.038451	-1.9755E-05	-3.2113	-0.0016498	-3.2497	-0.0016696	514.2594778395572	71.204	0.55833	70.947	70.564	71.122	-0.25712					15	12	2	0	0	0	0.027866	1	8322	8322		38.806	9.6566	1	140470			18440	13386	12872	12898	20860	20860					-0.00477054542238875
FYLRRRRRVHR	11	Unmodified	_FYLRRRRRVHR_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5073547363281	4	404.497367	1613.96036	1.3017	0.00052655	-1.7256	-0.00069798	-0.42383	-0.00017144	404.74750538657247	24.88	0.30799	24.708	24.599	24.907	-0.17151					13	6	3	0	0	0	0.024898	1	1123	1123		3.2113	3.2113	1	21174			18441	3256	12873	12899	20861	20861					0.17794130138827313
FYMTRLTD	8	Unmodified	_FYMTRLTD_					0	0	0			REV__ENSG00000123908|ENST00000220592|AGO2;REV__ENSG00000126070|ENST00000373191|AGO3;REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000123908|ENST00000220592|AGO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.75241	1045.49027	0.10077	5.2776E-05	-2.4075	-0.0012609	-2.3067	-0.0012082	523.7527002558627	87.242	0.41868	87.105	86.829	87.248	-0.13734					12	9	2	0	0	0	0.027866	1	10596	10596		40.573	0	1	27730	+		18442	22719;20938;22878	12874	12900	20862	20862					-0.030658786998628784
FYNQEESVR	9	Unmodified	_FYNQEESVR_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;HLA-DRB1|p.N111Tfs*19|1|0.35|ENSG00000196126|chr6:32584147-32584148|-/TG|frameshift_variant	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.8412475585938	2	586.272552	1170.53055	-0.71239	-0.00041766	4.3089	0.0025262	3.5965	0.0021085	586.2751019636015	53.462	0.62366	53.204	52.922	53.546	-0.25838					48	16	4	0	0	0	0.024447	1	5573	5573		49.442	17.912	1	2001500			18443	9824	12875	12901	20863	20863					-0.047892407756989996
FYNQHEKGY	9	Unmodified	_FYNQHEKGY_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.2880249023438	2	593.269813	1184.52507	-0.7144	-0.00042383	-3.3978	-0.0020158	-4.1122	-0.0024396	593.2680803552395	54.46	0.1702	54.215	54.166	54.337	-0.2453					7	4	3	0	0	0	0.024381	1	5772	5772		45.952	1.5748	1	94268	+		18444	22317	12876	12902	20864	20864					-0.0598091956751432
FYPPPGPH	8	Unmodified	_FYPPPGPH_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2579040527344	2	456.224146	910.433738	0.070144	3.2001E-05	-0.45487	-0.00020752	-0.38472	-0.00017552	456.2237522757744	34.492	1.9301	34.492	33.487	35.417	0					87	50	3	0	0	0	0.027866	1	2420	2420		80.997	37.371	1	264680			18445	1908	12877	12903	20865	20865					-0.0250613847420027
FYPPPGPH	8	Unmodified	_FYPPPGPH_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2586669921875	2	456.224146	910.433738	-0.41708	-0.00019028	-0.10534	-4.8059E-05	-0.52242	-0.00023834	456.2240988082802	34.379	1.8942	34.429	33.532	35.426	0.050255					86	48	2	0	0	0	0.027866	1	2401	2401		54.895	20.722	1	215430			18446	1908	12877	12903	20866	20866					-0.0250613847420027
FYPPPGPH	8	Unmodified	_FYPPPGPH_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.224146	910.433738	0.099764	4.5515E-05	-0.81332	-0.00037105	-0.71355	-0.00032554	456.2236574161795	34.402	1.6075	34.178	33.446	35.053	-0.22412	-0.16814	-0.00037971	NaN	80.997	61	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140340			18447	1908	12877	12903							-0.0250613847420027
FYPPPGPH	8	Unmodified	_FYPPPGPH_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.224146	910.433738	-0.30429	-0.00013882	-0.30486	-0.00013909	-0.60915	-0.00027791	456.2238691789512	34.48	1.6095	34.273	33.71	35.319	-0.20696	-0.073496	8.4231E-05	NaN	80.997	62	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143190			18448	1908	12877	12903							-0.0250613847420027
FYPPPGPH	8	Unmodified	_FYPPPGPH_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.224146	910.433738	-0.71018	-0.000324	0.36166	0.000165	-0.34852	-0.000159	456.22421314733765	34.496	1.3388	34.321	33.545	34.884	-0.17557	-0.025514	0.00069239	NaN	80.997	53	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125620			18449	1908	12877	12903							-0.0250613847420027
FYPRDHPL	8	Unmodified	_FYPRDHPL_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7648315429688	2	522.766709	1043.51886	-1.5401	-0.00080509	-2.5821	-0.0013499	-4.1222	-0.0021549	522.7652173848695	35.946	0.82659	35.946	35.647	36.474	0					55	22	3	0	0	0	0.87148	2	2809	2797;2809		53.351	9.2347	1	5515300	+		18450	21814	12878	12904	20867;20868	20868					-0.0011539300837739574
FYPRDHPL	8	Unmodified	_FYPRDHPL_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.764892578125	2	522.766709	1043.51886	-1.296	-0.0006775	-2.9424	-0.0015382	-4.2384	-0.0022157	522.7650381992048	35.798	0.83904	35.756	35.405	36.244	-0.042458					59	22	3	0	0	0	0.6536	2	2769	2769;2781		71.296	10.324	1	5220200	+		18451	21814	12878	12904	20869;20870	20869					-0.0011539300837739574
FYQEHPDL	8	Unmodified	_FYQEHPDL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7391357421875	2	524.740357	1047.46616	-0.56261	-0.00029522	0.35856	0.00018815	-0.20405	-0.00010707	524.7404487538712	46.62	0.83723	46.62	46.378	47.216	0					68	22	4	0	0	0	0.32162	2	4643	4630;4643		108.09	34.113	1	3580800			18452	2921	12879	12905	20871;20872	20872					-0.055673958618626784
FYQEHPDL	8	Unmodified	_FYQEHPDL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7391357421875	2	524.740357	1047.46616	-0.61911	-0.00032487	0.54702	0.00028704	-0.072095	-3.7831E-05	524.7405885193812	46.766	0.8854	46.613	46.276	47.161	-0.15301					72	23	4	0	0	0	0.34573	2	4635	4625;4635		104.75	33.451	1	3638600			18453	2921	12879	12905	20873;20874	20874					-0.055673958618626784
FYQEHPDL	8	Unmodified	_FYQEHPDL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.73779296875	2	524.740357	1047.46616	-0.08186	-4.2955E-05	0.018939	9.9378E-06	-0.062921	-3.3017E-05	524.7403098350106	46.616	1.1073	46.668	46.167	47.275	0.051395					74	25	4	0	0	0	0.30694	2	4566	4566;4579		110.12	30.905	1	4063600			18454	2921	12879	12905	20875;20876	20875					-0.055673958618626784
FYQRGYRWAGF	11	Unmodified	_FYQRGYRWAGF_					0	0	0		ENSG00000099960|ENST00000382932|SLC7A4	ENSG00000099960|ENST00000382932|SLC7A4	ENSG00000099960|ENST00000382932|SLC7A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.26947021484375	3	484.238678	1449.6942	-0.37606	-0.0001821	1.1496	0.00055666	0.7735	0.00037456	484.2393148781055	27.215	0.32723	27.215	27.034	27.361	0					16	8	3	0	0	0	0.024828	1	1467	1467		13.508	6.1082	1	122460			18455	2106	12880	12906	20877	20877					-0.01265598214149577
FYRFLKLF	8	Unmodified	_FYRFLKLF_					0	0	0			REV__ENST00000502290.1_1_4:141463686-141471526:+|nuORF	REV__ENST00000502290.1_1_4:141463686-141471526:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.330078125	2	567.328945	1132.64334	-0.57331	-0.00032526	2.19	0.0012424	1.6167	0.00091719	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.0574	1	10785	10785		9.4706	0	1	5699600	+		18456	33923	12881	12907	20878	20878					0.08232104478906876
FYRHLLNV	8	Unmodified	_FYRHLLNV_					0	0	0		ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8174438476562	2	531.298176	1060.5818	-0.0067277	-3.5744E-06	-0.67211	-0.00035709	-0.67884	-0.00036067	531.297477283867	86.32	0.48168	86.133	85.859	86.341	-0.18696					15	10	2	0	0	0	0.027866	1	10475	10475		13.775	0	1	48703			18457	6875	12882	12908	20879	20879					0.05393172779668021
FYSLISGIIVL	11	Unmodified	_FYSLISGIIVL_					0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.7990112304688	2	612.865557	1223.71656	-1.4293	-0.00087597	-2.8516	-0.0017476	-4.2809	-0.0026236	612.8640215775782	58.678	0.31368	58.49	58.349	58.663	-0.18795					13	7	2	0	0	0	0.024735	1	6461	6461		34.173	18.531	1	122570	+		18458	24393	12883	12909	20880	20880					0.11365188410900373
FYTLVLFG	8	Unmodified	_FYTLVLFG_					0	0	0		AFF3|p.P747L|1|0.41|ENSG00000144218|chr2:99593421-99593421|G/A|missense_variant	AFF3|p.P747L|1|0.41|ENSG00000144218|chr2:99593421-99593421|G/A|missense_variant	AFF3|p.P747L|1|0.41|ENSG00000144218|chr2:99593421-99593421|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2774963378906	2	480.265479	958.516405	0.08408	4.0381E-05	-2.7059	-0.0012996	-2.6218	-0.0012592	480.26445887435625	82.914	0.17223	82.914	82.793	82.965	0					5	3	2	0	0	0	0.027866	1	10352	10352		29.842	8.8946	1	21121			18459	42	12884	12910	20881	20881					0.03548758533952423
FYTLVLFG	8	Unmodified	_FYTLVLFG_					0	0	0		AFF3|p.P747L|1|0.41|ENSG00000144218|chr2:99593421-99593421|G/A|missense_variant	AFF3|p.P747L|1|0.41|ENSG00000144218|chr2:99593421-99593421|G/A|missense_variant	AFF3|p.P747L|1|0.41|ENSG00000144218|chr2:99593421-99593421|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2779541015625	2	480.265479	958.516405	-0.95257	-0.00045749	0.37239	0.00017884	-0.58018	-0.00027864	480.2656766832886	80.878	0.59598	80.902	80.53	81.126	0.023903					23	14	2	0	0	0	0.027866	1	10004	10004		29.842	9.3597	1	237520			18460	42	12884	12910	20882	20882					0.03548758533952423
FYTVLLFV	8	Unmodified	_FYTVLLFV_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2913818359375	2	501.288954	1000.56336	-0.41084	-0.00020595	3.1992	0.0016037	2.7884	0.0013978	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	1.0017	1	10523	10523		37.028	1.8278	1	2038300			18461	2482	12885	12911	20883	20883					0.06309618085094826
FYVLIKWPK	9	Unmodified	_FYVLIKWPK_					0	0	0			REV__ENST00000357613.8_1_16:75481071-75481158:-|nuORF	REV__ENST00000357613.8_1_16:75481071-75481158:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.3645629882812	2	597.357702	1192.70085	-1.2192	-0.0007283	2.6692	0.0015945	1.45	0.00086617	597.3590702861352	98.599	1.5555	98.599	98.19	99.746	0					99	35	4	0	0	0	0.96855	1	12616	12616		26.796	3.7536	1	2988700	+		18462	30835	12886	12912	20884	20884					0.11220946684511546
FYVLIKWPK	9	Unmodified	_FYVLIKWPK_					0	0	0			REV__ENST00000357613.8_1_16:75481071-75481158:-|nuORF	REV__ENST00000357613.8_1_16:75481071-75481158:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.3590698242188	2	597.357702	1192.70085	-0.33408	-0.00019956	2.0052	0.0011978	1.6712	0.00099828	597.3587791150173	98.823	1.5113	98.654	98.154	99.666	-0.16862					108	35	4	0	0	0	0.97516	1	12209	12209		25.45	1.9275	1	2695800	+		18463	30835	12886	12912	20885	20885					0.11220946684511546
FYVLQMRRKL	10	Unmodified	_FYVLQMRRKL_					0	0	0			REV__ENST00000358075.10_1_X:77084599-77084677:-|nuORF	REV__ENST00000358075.10_1_X:77084599-77084677:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.9327697753906	3	451.932309	1352.7751	0.13666	6.176E-05	0.77363	0.00034963	0.91028	0.00041139	451.9325494046975	96.949	2.203	96.949	95.778	97.981	0					146	50	4	0	0	0	1.1117	1	12372	12372		16.717	0.18753	1	652500	+		18464	30847	12887	12913	20886	20886					0.112819665043844
FYVVIPPAL	9	Unmodified	_FYVVIPPAL_					0	0	0		nc|ENSG00000273085|Q8NGJ3|OR52E1	nc|ENSG00000273085|Q8NGJ3|OR52E1	nc|ENSG00000273085|Q8NGJ3|OR52E1	MSMS	OPSCC_39_ClassI_Rep-2	2	509.8047180175781	2	509.802229	1017.5899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.149	1	83.058	82.558	83.558	-0.090454								0	0	0	0.60467	1	10357	10357		39.021	4.849	1				18465	18794	12888	12914	20887	20887					0.08181306976405267
FYYILDIT	8	Unmodified	_FYYILDIT_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3037719726562	2	524.273501	1046.53245	0.78071	0.00040931	3.9747	0.0020838	4.7554	0.0024931	524.2747125744482	85.414	0.42056	85.264	85.072	85.492	-0.14967					14	9	2	0	0	0	0.027866	1	10372	10372		37.028	29.224	1	159090			18466	5644	12889	12915	20888	20888					0.011044199801972354
FYYPRRYGRNH	11	Unmodified	_FYYPRRYGRNH_					0	0	0			REV__ENSG00000054118|ENST00000354618|THRAP3	REV__ENSG00000054118|ENST00000354618|THRAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.789794921875	3	510.256731	1527.74836	0.30324	0.00015473	-1.6846	-0.00085956	-1.3813	-0.00070483	510.2573099427946	85.704	0.16545	85.509	85.386	85.552	-0.19508					5	3	2	0	0	0	0.024886	1	10381	10381		10.104	6.8926	1	36589	+		18467	20184	12890	12916	20889	20889					0.005599939374178575
GAAATHLEV	9	Unmodified	_GAAATHLEV_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF	ENSG00000087111|ENST00000308360|PIGS	ENSG00000087111|ENST00000308360|PIGS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7301330566406	2	434.729792	867.445031	-0.88829	-0.00038616	1.0312	0.0004483	0.14293	6.2138E-05	434.7302471105435	38.182	0.96569	38.182	37.902	38.868	0					77	26	4	0	0	0	0.11848	4	3169	3169;3179;3194;3208		106.42	40.612	1	15507000			18468	1836	12891	12917	20890;20891;20892;20893	20890					0.006006388292917109
GAAATHLEV	9	Unmodified	_GAAATHLEV_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF	ENSG00000087111|ENST00000308360|PIGS	ENSG00000087111|ENST00000308360|PIGS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7296142578125	2	434.729792	867.445031	-0.76324	-0.0003318	0.81355	0.00035367	0.050305	2.1869E-05	434.7301581167276	38.115	1.0819	38.032	37.706	38.788	-0.082516					88	29	4	0	0	0	0.028181	4	3152	3143;3152;3165;3178		143.02	60.714	1	14512000			18469	1836	12891	12917	20894;20895;20896;20897	20895					0.006006388292917109
GAAATHLEV	9	Unmodified	_GAAATHLEV_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF	ENSG00000087111|ENST00000308360|PIGS	ENSG00000087111|ENST00000308360|PIGS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7303466796875	2	434.729792	867.445031	-1.3302	-0.00057829	1.3585	0.0005906	0.028327	1.2315E-05	434.7303901557609	38.277	1.1865	38.304	37.987	39.174	0.027275					94	32	5	0	0	0	0.049585	4	3143	3121;3131;3143;3155		128.86	41.484	1	15006000			18470	1836	12891	12917	20898;20899;20900;20901	20900					0.006006388292917109
GAAGGGPG	8	Unmodified	_GAAGGGPG_					0	0	0		ENSG00000169891|ENST00000357277|REPS2;nc|ENSG00000169891|Q8NFH8-4|REPS2	ENSG00000169891|ENST00000357277|REPS2	ENSG00000169891|ENST00000357277|REPS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8317260742188	1	543.252151	542.244875	-0.080039	-4.3481E-05	4.1699	0.0022653	4.0899	0.0022218	543.2540452585812	72.254	0.36738	71.973	71.658	72.025	-0.28124					14	9	2	0	0	0	0.027866	1	8703	8703		10.185	0	1	112590			18471	7984	12892	12918	20902	20902					-0.04455791047655566
GAAGKGYLW	9	Unmodified	_GAAGKGYLW_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.7428283691406	2	461.742702	921.470852	0.64757	0.00029901	-0.4236	-0.00019559	0.22397	0.00010342	461.7422771640599	50.989	1.1266	50.877	50.563	51.689	-0.11163					44	29	2	0	0	0	0.55828	1	5232	5232		55.504	12.64	1	1605100			18472	5794	12893	12919	20903	20903					0.006975330715704331
GAAGKGYLW	9	Unmodified	_GAAGKGYLW_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.7430114746094	2	461.742702	921.470852	-0.084105	-3.8835E-05	0.34513	0.00015936	0.26102	0.00012053	461.7425809965272	51.272	0.6908	50.996	50.702	51.393	-0.27643					42	17	3	0	0	0	0.67308	1	5256	5256		47.916	7.343	1	1470900			18473	5794	12893	12919	20904	20904					0.006975330715704331
GAAGKGYLW	9	Unmodified	_GAAGKGYLW_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.7427978515625	2	461.742702	921.470852	0.76157	0.00035165	-0.53951	-0.00024911	0.22206	0.00010254	461.7421799256141	51.047	0.64925	50.866	50.572	51.222	-0.18071					39	16	3	0	0	0	0.67308	1	5233	5233		47.916	0	1	1330700			18474	5794	12893	12919	20905	20905					0.006975330715704331
GAAGRAPVAA	10	Unmodified	_GAAGRAPVAA_					0	0	0		ENST00000219315.8_1_16:58549395-58550426:+|nuORF;ENST00000492050.5_1_16:58549468-58550426:+|nuORF;ENST00000394266.8_1_16:58549747-58550573:+|nuORF;ENST00000470003.5_1_16:58549747-58550349:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.73809814453125	2	420.737951	839.46135	-0.48906	-0.00020577	1.2308	0.00051783	0.7417	0.00031206	420.7383850676549	23.32	1.3138	23.259	22.981	24.295	-0.060862					62	30	4	0	0	0	0.75995	1	884	884		63.306	7.8021	1	3425100			18475	11170	12894	12920	20906	20906					0.03519764786040014
GAAKAVGAPK	10	Unmodified	_GAAKAVGAPK_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.5411071777344	2	435.263802	868.513051	-0.42115	-0.00018331	0.73231	0.00031875	0.31116	0.00013544	435.2638957271624	20.961	0.74186	20.748	20.425	21.167	-0.2128					23	14	2	0	0	0	0.03519	1	552	552		15.642	3.435	1	47490			18476	1343	12895	12921	20907	20907					0.07353508479945958
GAAKAVGAPK	10	Unmodified	_GAAKAVGAPK_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.263802	868.513051	-0.70831	-0.0003083	0.90642	0.00039453	0.19812	8.6233E-05	435.26406832793583	20.837	0.43902	20.837	20.609	21.048	0	0.068564	0.00077077	NaN	10.265	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13461			18477	1343	12895	12921							0.07353508479945958
GAAKAVGAPK	10	Unmodified	_GAAKAVGAPK_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.263802	868.513051	0.95065	0.00041378	-0.5417	-0.00023578	0.40895	0.000178	435.2634150517208	20.829	0.44256	20.898	20.661	21.103	0.068901	0.12926	-0.00048986	NaN	10.265	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10488			18478	1343	12895	12921							0.07353508479945958
GAAKAVGAPK	10	Unmodified	_GAAKAVGAPK_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.263802	868.513051	0.19914	8.6677E-05	0.023301	1.0142E-05	0.22244	9.6819E-05	435.2637983682095	20.796	0.53259	20.628	20.395	20.927	-0.16774	-0.14074	1.9867E-06	NaN	10.265	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29061			18479	1343	12895	12921							0.07353508479945958
GAAKAVGAPK	10	Unmodified	_GAAKAVGAPK_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.263802	868.513051	0.5585	0.00024309	-0.84834	-0.00036925	-0.28984	-0.00012616	435.2635277243756	20.928	0.7373	20.732	20.484	21.221	-0.19577	-0.036487	-0.0007568	NaN	10.265	21	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37392			18480	1343	12895	12921							0.07353508479945958
GAAKKAKK	8	Unmodified	_GAAKKAKK_					0	0	0			REV__ENSG00000184357|ENST00000331442|H1-5	REV__ENSG00000184357|ENST00000331442|H1-5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.5272521972656	2	401.268887	800.523222	1.2616	0.00050625	-0.55437	-0.00022245	0.70725	0.0002838	401.2685196817633	18.38	0.29744	18.176	18.014	18.312	-0.20371					8	5	2	0	0	0	0.027866	1	276	276		1.4648	0	1	18291	+		18481	27661	12896	12922	20908	20908					0.11498116205177666
GAAKKAKK	8	Unmodified	_GAAKKAKK_					0	0	0			REV__ENSG00000184357|ENST00000331442|H1-5	REV__ENSG00000184357|ENST00000331442|H1-5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	401.268887	800.523222	1.5479	0.00062112	-1.3341	-0.00053531	0.21384	8.5807E-05	401.2681956661127	18.363	0.2464	18.207	18.05	18.297	-0.15637	0.015318	-0.0003359	NaN	4.3163	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16352	+		18482	27661	12896	12922							0.11498116205177666
GAAKQKFFKTN	11	Unmodified	_GAAKQKFFKTN_					0	0	0			REV__ENST00000484386.1_1_15:44097294-44102132:-|nuORF	REV__ENST00000484386.1_1_15:44097294-44102132:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.8839111328125	3	413.899662	1238.67716	-0.021774	-9.0122E-06	1.5308	0.0006336	1.509	0.00062459	414.2358582948344	27.737	0.20705	27.58	27.477	27.685	-0.15664					7	4	2	0	0	0	0.024745	1	1540	1540		42.243	12.692	1	30590	+		18483	23994	12897	12923	20909	20909					0.06736481180064402
GAALFRQAL	9	Unmodified	_GAALFRQAL_					0	0	0			REV__ENST00000260056.6_1_11:82708357-82745471:-|nuORF	REV__ENST00000260056.6_1_11:82708357-82745471:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7788391113281	2	473.777077	945.5396	0.27668	0.00013108	1.5422	0.00073067	1.8189	0.00086175	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.75282	1	938	938		42.474	0	1	5959600	+		18484	29594	12898	12924	20910	20910					0.06465197371267095
GAAMKFELPA	10	Unmodified	_GAAMKFELPA_					0	0	0			REV__PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant	REV__PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2960205078125	2	517.770603	1033.52665	-0.37081	-0.00019199	-3.0518	-0.0015801	-3.4226	-0.0017721	517.7689010147951	78.275	1.1551	78.02	77.743	78.898	-0.25471					50	26	3	0	0	0	0.03519	1	9382	9382		66.429	20.457	1	784870	+		18485	24220	12899	12925	20911	20911					0.011229981968881475
GAAPRRLD	8	Unmodified	_GAAPRRLD_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-4|MED16;REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.8609313964844	2	428.243401	854.472249	-0.93287	-0.0003995	1.3282	0.00056881	0.39537	0.00016931	428.243756635657	21.459	0.96813	21.459	20.9	21.868	0					31	19	3	0	0	0	0.027866	1	608	608		18.324	0	1	57260	+		18486	36957;36958	12900	12926	20912	20912					0.039191671603248324
GAARPQIK	8	Unmodified	_GAARPQIK_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.70404052734375	2	420.756144	839.497735	-0.94044	-0.0003957	0.23908	0.00010059	-0.70137	-0.0002951	420.7561707500169	33.679	0.39065	33.509	33.317	33.707	-0.16972					13	9	2	0	0	0	0.027866	1	2387	2387		20.482	1.1219	1	74780			18487	2462	12901	12927	20913	20913					0.07156641682740883
GAASGGGG	8	Unmodified	_GAASGGGG_					0	0	0		ENSG00000153574|ENST00000283646|RPIA;ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000153574|ENST00000283646|RPIA;ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8080444335938	1	533.231416	532.224139	-0.12474	-6.6515E-05	4.2515	0.002267	4.1267	0.0022005	533.2330838399378	45.893	0.18072	45.797	45.669	45.849	-0.096649					6	4	2	0	0	0	0.027866	1	4390	4390		8.8223	0.59103	1	60684			18488	6352;10430	12902	12928	20914	20914					-0.06068381427337499
GAASGGGG	8	Unmodified	_GAASGGGG_					0	0	0		ENSG00000153574|ENST00000283646|RPIA;ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000153574|ENST00000283646|RPIA;ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		1	533.231416	532.224139	-0.63977	-0.00034114	9.373	0.004998	8.7333	0.0046568	533.236735023765	45.941	0.14432	45.68	45.557	45.701	-0.26118	-0.058457	0.0022051	NaN	4.3163	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175220			18489	6352;10430	12902	12928							-0.06068381427337499
GAAVALTIFAV	11	Unmodified	_GAAVALTIFAV_					0	0	0			REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF	REV__ENST00000489894.5_1_2:71216836-71221917:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8308715820312	2	516.808042	1031.60153	-0.048455	-2.5042E-05	-4.0126	-0.0020737	-4.061	-0.0020988	516.8059415672129	53.866	0.42102	53.621	53.383	53.804	-0.2453					22	12	2	0	0	0	0.024766	1	5671	5671		53.351	7.3792	1	685540	+		18490	24309	12903	12929	20915	20915					0.08699503999741864
GAAVFNNK	8	Unmodified	_GAAVFNNK_					0	0	0			REV__nc|ENSG00000080224|Q9UF33|EPHA6	REV__nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.7187805175781	2	410.719227	819.423902	0.44315	0.00018201	-1.4011	-0.00057547	-0.95797	-0.00039345	410.7185615601089	96.027	1.7726	95.89	95.331	97.104	-0.1367					105	40	4	0	0	0	1.0574	2	11829	11829;11853		21.702	1.0356	1	2186500	+		18491	20650	12904	12930	20916;20917	20916					0.006966735204287033
GACSLDCLHP	10	2 Carbamidomethyl (C)	_GAC(Carbamidomethyl (C))SLDC(Carbamidomethyl (C))LHP_	GAC(1)SLDC(1)LHP		GAC(53)SLDC(53)LHP		0	2	0		ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.239501953125	2	565.241883	1128.46921	-0.80598	-0.00045557	-3.5961	-0.0020327	-4.4021	-0.0024883	565.239717856392	48.934	0.7932	48.833	48.471	49.264	-0.1008					49	20	3	0	0	0	0.91051	1	4904	4904		53.351	9.2347	1	2132000			18492	8825	12905	12931	20918	20918	108;109				-0.0898821207099445
GADANFSVWI	10	Unmodified	_GADANFSVWI_					0	0	0		nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	nc|ENSG00000165416|Q9Y2Z0|SUGT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.261474609375	2	540.261456	1078.50836	-1.1365	-0.00061402	1.2098	0.00065362	0.073288	3.9595E-05	540.2619719728336	61.787	0.94176	61.609	61.287	62.229	-0.17782					67	23	4	0	0	0	0.64538	1	6918	6918		71.877	6.4121	1	4373700			18493	18465	12906	12932	20919	20919					-0.027754204534858218
GADLAQLISP	10	Unmodified	_GADLAQLISP_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.301025390625	2	492.771657	983.528761	-0.35394	-0.00017441	0.25261	0.00012448	-0.10134	-4.9936E-05	492.7716556581397	56.666	0.84923	56.763	56.435	57.284	0.097897					49	23	4	0	0	0	0.03519	1	6198	6198		60.118	5.3419	1	4079900	+		18494	28725	12907	12933	20920	20920					0.03633750206347486
GADRLIHL	8	Unmodified	_GADRLIHL_					0	0	0		ENST00000536995.5_1_11:72535848-72537775:+|nuORF;nc|ENSG00000168010|Q8NAA4-2|ATG16L2;ENSG00000168010|ENST00000321297|ATG16L2	ENST00000536995.5_1_11:72535848-72537775:+|nuORF	ENST00000536995.5_1_11:72535848-72537775:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.7615661621094	2	447.761426	893.5083	-0.14101	-6.3138E-05	0.23676	0.00010601	0.095755	4.2875E-05	447.76137005371777	25.552	0.67179	25.381	25.118	25.79	-0.17151					40	15	4	0	0	0	1.0017	1	1199	1199		37.028	1.4102	1	1064200			18495	7769	12908	12934	20921	20921					0.05728624337200472
GADTKRPL	8	Unmodified	_GADTKRPL_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2300720214844	2	429.245609	856.476666	-0.06477	-2.7802E-05	0.41813	0.00017948	0.35336	0.00015168	429.2456640896014	43.039	0.61568	42.899	42.484	43.1	-0.13929					30	16	3	0	0	0	0.027866	1	3969	3969		37.159	0	1	259780			18496	8622	12909	12935	20922	20922					0.04268631583215665
GADVLAPLL	9	Unmodified	_GADVLAPLL_					0	0	0			REV__ENSG00000242802|ENST00000649063|AP5Z1	REV__ENSG00000242802|ENST00000649063|AP5Z1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7480163574219	2	434.760561	867.506569	0.21669	9.4207E-05	-0.19642	-8.5395E-05	0.020267	8.8113E-06	434.76031321102107	66.179	0.68002	66.209	65.587	66.267	0.030098					28	17	2	0	0	0	0.022924	1	7710	7710		63.306	5.495	1	845870	+		18497	28982	12910	12936	20923	20923					0.06751570528570028
GADVWFKELDI	11	Unmodified	_GADVWFKELDI_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.2346496582031	3	431.555561	1291.64485	0.29292	0.00012641	-2.1032	-0.00090766	-1.8103	-0.00078125	431.5544972726494	35.707	0.20935	35.509	35.366	35.575	-0.19829					9	5	2	0	0	0	0.024762	1	2725	2725		11.932	7.5192	1	270890			18498	5662	12911	12937	20924	20924					0.010696489863676106
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8432006835938	2	575.845156	1149.67576	-2.0743	-0.0011945	-1.718	-0.00098928	-3.7922	-0.0021837	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	0.849	6	11424	11424;11483;11517;11542;11601;11613		54.722	15.207	1	5238400	+		18499	27764	12912	12938	20925;20926;20927;20928;20929;20930	20925					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8431396484375	2	575.845156	1149.67576	0.50468	0.00029062	-4.1927	-0.0024144	-3.6881	-0.0021238	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.9728	1	11305	11305		42.864	6.4175	1	1452500	+		18500	27764	12912	12938	20931	20931					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	575.845156	1149.67576	-0.26488	-0.00015253	-3.539	-0.0020379	-3.8039	-0.0021904	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	0.97926	3	11622	11572;11622;11695		41.427	12.277	1	4946400	+		18501	27764	12912	12938	20932;20933;20934	20933					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8432006835938	2	575.845156	1149.67576	-0.10957	-6.3095E-05	-3.6823	-0.0021204	-3.7919	-0.0021835	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	0.96599	3	11418	11418;11441;11562		44.377	13.874	1	4935500	+		18502	27764	12912	12938	20935;20936;20937	20935					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8434448242188	2	575.845156	1149.67576	-1.2575	-0.00072414	-2.5466	-0.0014665	-3.8042	-0.0021906	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	0.87847	5	11155	11107;11131;11155;11215;11227		52.937	16.49	1	6251500	+		18503	27764	12912	12938	20938;20939;20940;20941;20942	20940					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8438110351562	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0017	2	11133	11133;11253		36.447	7.2767	1	6382400	+		18504	27764	12912	12938	20943;20944	20943					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8431396484375	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0017	5	11190	11130;11142;11190;11214;11349		36.447	7.2767	1	5880000	+		18505	27764	12912	12938	20945;20946;20947;20948;20949	20947					0.10690847091291289
GAEPGLRLL	9	Unmodified	_GAEPGLRLL_					0	0	0		ENST00000481564.1_1_7:23338971-23340720:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1	ENST00000481564.1_1_7:23338971-23340720:+|nuORF	ENST00000481564.1_1_7:23338971-23340720:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.2769470214844	2	463.276909	924.539266	0.59413	0.00027525	-0.70998	-0.00032892	-0.11585	-5.3668E-05	463.2764721635122	59.44	0.87695	59.243	58.888	59.765	-0.19742					48	21	3	0	0	0	0.23085	1	6567	6567		84.916	2.6105	1	931640			18506	6559	12913	12939	20950	20950					0.07397777651419801
GAFALTKAQEY	11	Unmodified	_GAFALTKAQEY_					0	0	0			REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1	REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.2073669433594	3	400.208273	1197.60299	0.98996	0.00039619	-3.5034	-0.0014021	-2.5135	-0.0010059	400.2067684535851	23.838	1.0679	23.658	23.395	24.463	-0.17989					56	24	4	0	0	0	0.96926	1	972	972		43.651	2.2242	1	1157100	+		18507	36809	12914	12940	20951	20951					0.01209093297848085
GAFALTKAQEY	11	Unmodified	_GAFALTKAQEY_					0	0	0			REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1	REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.2073059082031	3	400.208273	1197.60299	1.5026	0.00060136	-4.4833	-0.0017943	-2.9807	-0.0011929	400.20647986788117	23.876	0.91467	23.695	23.371	24.285	-0.18089					55	20	4	0	0	0	1.0123	1	959	959		34.087	0	1	1322600	+		18508	36809	12914	12940	20952	20952					0.01209093297848085
GAFLSGQAVF	10	Unmodified	_GAFLSGQAVF_					0	0	0		ENST00000369217.8_1_6:100014911-100016464:-|nuORF;ENST00000523985.5_1_6:100009545-100016464:-|nuORF	ENST00000369217.8_1_6:100014911-100016464:-|nuORF	ENST00000369217.8_1_6:100014911-100016464:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7587585449219	2	498.761092	995.507631	-0.99029	-0.00049392	-3.4062	-0.0016989	-4.3965	-0.0021928	498.7593396555711	34.407	1.0258	34.232	33.896	34.922	-0.17557					75	25	5	0	0	0	0.52982	1	2511	2511		84.916	13.62	1	4506700			18509	12917	12915	12941	20953	20953					0.009697848974724366
GAGAGPTPPPL	11	Unmodified	_GAGAGPTPPPL_					0	0	0			REV__ENST00000493228.1_1_10:72643709-72647885:-|nuORF	REV__ENST00000493228.1_1_10:72643709-72647885:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7535095214844	2	467.753267	933.491981	1.1614	0.00054326	-2.337	-0.0010931	-1.1756	-0.00054987	467.75205042268254	110.47	0.58345	110.47	110.27	110.86	0					36	18	3	0	0	0	1.0614	1	14042	14042		21.96	2.5999	1	47561	+		18510	33758	12916	12942	20954	20954					0.022574983804247495
GAGAGSLLSL	10	Unmodified	_GAGAGSLLSL_					0	0	0		ENST00000252699.6_1_19:39220158-39220314:+|nuORF	ENST00000252699.6_1_19:39220158-39220314:+|nuORF	ENST00000252699.6_1_19:39220158-39220314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.2295837402344	2	423.239993	844.465432	-0.68599	-0.00029034	0.68093	0.0002882	-0.0050529	-2.1386E-06	423.240294892082	23.989	0.55991	23.989	23.737	24.297	0					29	12	3	0	0	0	0.03519	1	1020	1020		44.117	15.863	1	166750			18511	11360	12917	12943	20955	20955					0.03697809489096926
GAGAKAFSH	9	Unmodified	_GAGAKAFSH_					0	0	0			REV__ENST00000495581.1_1_6:34215352-34215568:-|nuORF	REV__ENST00000495581.1_1_6:34215352-34215568:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.2378234863281	2	423.216852	844.419151	0.047889	2.0268E-05	0.053997	2.2852E-05	0.10189	4.312E-05	423.2167994346976	32.54	0.4832	32.382	32.121	32.605	-0.15772					17	11	2	0	0	0	0.024436	1	2263	2263		16.473	0	1	232590	+		18512	33806	12918	12944	20956	20956					-0.009282106223395203
GAGGRQLEP	9	Unmodified	_GAGGRQLEP_					0	0	0		ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	2	442.732866	883.451179	-0.3648	-0.00016151	2.8314	0.0012535	2.4666	0.001092	442.7350960399946	42.981	0.46429	42.744	42.489	42.953	-0.23736					14	11	2	0	0	0	0.024323	1	3903	3903		14.865	0	1	73880			18513	4967	12919	12945	20957	20957					0.004791570608063012
GAGGRRPR	8	Unmodified	_GAGGRRPR_					0	0	0			REV__ENST00000318950.10_1_11:9685643-9685739:+|nuORF	REV__ENST00000318950.10_1_11:9685643-9685739:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2143249511719	2	413.74136	825.468167	0.31992	0.00013237	-3.3996	-0.0014066	-3.0797	-0.0012742	413.74287463621755	24.365	0.44318	24.365	24.209	24.653	0					12	9	2	0	0	0	0.027866	1	1076	1076		14.664	0	1	40818	+		18514	30316	12920	12946	20958	20958					0.048451224572772844
GAGLDSSEQAD	11	Unmodified	_GAGLDSSEQAD_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;ENST00000477340.5_1_20:62339420-62365174:+|nuORF	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2282104492188	2	525.222725	1048.4309	-0.31347	-0.00016464	4.2167	0.0022147	3.9032	0.0020501	525.2248748347317	46.197	0.93981	45.935	45.63	46.569	-0.26118					39	24	2	0	0	0	0.1527	1	4441	4441		104.06	10.861	1	3777100			18515	9955	12921	12947	20959	20959					-0.09138103180316648
GAGPPAQAVP	10	Unmodified	_GAGPPAQAVP_					0	0	0			REV__nc|ENSG00000128604|Q13568-5|IRF5	REV__nc|ENSG00000128604|Q13568-5|IRF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.73193359375	2	432.732335	863.450116	0.94554	0.00040916	-2.2002	-0.00095211	-1.2547	-0.00054294	432.7313165592402	98.51	1.8019	98.507	97.893	99.695	-0.0026855					100	41	3	0	0	0	0.9856	1	12519	12519		47.916	1.9636	1	3032200	+		18516	23000	12922	12948	20960	20960					0.012929426918958598
GAGSGPVP	8	Unmodified	_GAGSGPVP_					0	0	0		ENST00000356387.6_1_7:102087473-102087641:+|nuORF	ENST00000356387.6_1_7:102087473-102087641:+|nuORF	ENST00000356387.6_1_7:102087473-102087641:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	641.8831787109375	1	641.325316	640.31804	1.0106	0.00064812	-4.0983	-0.0026284	-3.0877	-0.0019802	641.3223732513329	97.409	0.71423	97.286	96.973	97.688	-0.12368					21	15	2	0	0	0	0.027866	1	12031	12031		21.702	7.927	1	41371			18517	12667	12923	12949	20961	20961					-0.016506623250620578
GAGSRRTV	8	Unmodified	_GAGSRRTV_					0	0	0			REV__ENST00000248104.11_1_16:1421590-1429607:-|nuORF	REV__ENST00000248104.11_1_16:1421590-1429607:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.208740234375	2	402.227751	802.440949	0.89765	0.00036106	-1.1519	-0.00046334	-0.2543	-0.00010229	402.22712054348256	20.004	0.49034	20.004	19.735	20.225	0					12	9	2	0	0	0	0.027866	1	477	477		8.8223	4.1406	1	20769	+		18518	29481	12924	12950	20962	20962					0.03182594126235472
GAGSRRTV	8	Unmodified	_GAGSRRTV_					0	0	0			REV__ENST00000248104.11_1_16:1421590-1429607:-|nuORF	REV__ENST00000248104.11_1_16:1421590-1429607:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	402.227751	802.440949	0.18405	7.4029E-05	-0.11643	-4.6831E-05	0.06762	2.7199E-05	402.227648242586	20.317	0.34489	20.212	20.03	20.375	-0.10477	0.10426	0.00029332	NaN	8.8223	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19763	+		18519	29481	12924	12950							0.03182594126235472
GAGVWGAGKV	10	Unmodified	_GAGVWGAGKV_					0	0	0			REV__ENST00000488401.5_1_3:183993962-184009147:+|nuORF	REV__ENST00000488401.5_1_3:183993962-184009147:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.760498046875	2	451.248152	900.481751	-0.71241	-0.00032147	3.8949	0.0017576	3.1825	0.0014361	451.2500762085311	38.753	1.0974	38.532	37.761	38.858	-0.22149					61	30	3	0	0	0	0.03519	1	3273	3273		60.294	26.778	1	316410	+		18520	33643	12925	12951	20963	20963					0.02752935445857929
GAHYILDGPA	10	Unmodified	_GAHYILDGPA_					0	0	0			REV__ENSG00000143473|ENST00000271751|KCNH1;REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2766418457031	2	507.256174	1012.49779	0.69429	0.00035218	-0.17927	-9.0938E-05	0.51502	0.00026125	507.2557600782685	54.737	0.56108	54.531	54.197	54.758	-0.20613					21	14	2	0	0	0	0.03519	1	5830	5830		47.916	17.412	1	167930	+		18521	23983;24252	12926	12952	20964	20964					-0.007954031079066226
GAIFALPIAL	10	Unmodified	_GAIFALPIAL_					0	0	0			REV__nc|ENSG00000105971|P51636-2|CAV2	REV__nc|ENSG00000105971|P51636-2|CAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30718994140625	2	493.307678	984.600803	0.23652	0.00011668	-0.93421	-0.00046085	-0.69768	-0.00034417	493.307150560105	101.01	1.7731	101.01	100.31	102.08	0					119	40	5	0	0	0	0.72076	1	12913	12913		65.897	0	1	8510800	+		18522	21582	12927	12953	20965	20965					0.10788709350697445
GAIIFWNMYNL	11	Unmodified	_GAIIFWNMYNL_					0	0	0			REV__ENSG00000182557|ENST00000355530|SPNS3	REV__ENSG00000182557|ENST00000355530|SPNS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.8773498535156	3	447.893519	1340.65873	-0.4787	-0.00021441	-2.7834	-0.0012467	-3.2621	-0.0014611	447.8923080769839	64.622	0.15605	64.366	64.23	64.386	-0.25563					6	3	2	0	0	0	0.024783	1	7321	7321		36.318	14.537	1	46484	+		18523	27488	12928	12954	20966	20966					0.002026032138246592
GAIKTPWPE	9	Unmodified	_GAIKTPWPE_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3066101074219	2	499.768917	997.523281	-0.31485	-0.00015735	-3.3712	-0.0016848	-3.686	-0.0018422	499.76707248419655	30.794	0.66915	30.869	30.544	31.213	0.074314					31	15	3	0	0	0	0.023817	1	1967	1967		60.972	13.056	1	607520			18524	9960	12929	12955	20967	20967					0.024420714145207967
GAKLAREQEEL	11	Unmodified	_GAKLAREQEEL_					0	0	0			REV__ENST00000547616.2_1_14:19475147-19475555:-|nuORF	REV__ENST00000547616.2_1_14:19475147-19475555:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3361206054688	2	622.335684	1242.65681	0.2866	0.00017836	1.052	0.0006547	1.3386	0.00083306	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.0292	1	13534	13534		30.318	0	1	1619900	+		18525	32493	12930	12956	20968	20968					0.04519265729595645
GAKPGSARGPQ	11	Unmodified	_GAKPGSARGPQ_					0	0	0		ENST00000295759.11_1_2:220108341-220110088:-|nuORF	ENST00000295759.11_1_2:220108341-220110088:-|nuORF	ENST00000295759.11_1_2:220108341-220110088:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7691040039062	2	513.277972	1024.54139	-0.50272	-0.00025804	-3.886	-0.0019946	-4.3888	-0.0022527	513.2756365267938	32.366	1.3242	32.429	31.961	33.286	0.062885					57	34	3	0	0	0	0.024774	1	2306	2306		54.722	2.4232	1	186480			18526	11830	12931	12957	20969	20969					0.030102063892172737
GAKSRPLAN	9	Unmodified	_GAKSRPLAN_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2643127441406	2	457.264333	912.514114	0.12297	5.623E-05	0.47067	0.00021522	0.59364	0.00027145	457.26455809769396	78.62	1.7791	78.636	78.195	79.974	0.015907					113	42	3	0	0	0	0.94779	1	9668	9668		29.17	2.4771	1	771590			18527	5648	12932	12958	20970	20970					0.054357228488470355
GAKTIKRK	8	Unmodified	_GAKTIKRK_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.760498046875	2	451.300719	900.586885	-0.59842	-0.00027007	3.9663	0.00179	3.3679	0.0015199	451.30240029617653	39.133	0.45973	38.91	38.652	39.111	-0.22311					15	12	2	0	0	0	0.027866	1	3273	3273		37.159	11.709	1	319170	+		18528	20771	12933	12959	20971	20971					0.13261476642276193
GALAERQQL	9	Unmodified	_GALAERQQL_					0	0	0		ENSG00000003756|ENST00000347869|RBM5;ENST00000475590.5_1_3:50151466-50154632:+|nuORF	ENSG00000003756|ENST00000347869|RBM5	ENSG00000003756|ENST00000347869|RBM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2731018066406	2	493.274898	984.535243	-1.1069	-0.00054601	0.92099	0.0004543	-0.18593	-9.1712E-05	493.2752789895785	22.36	0.71889	22.434	21.981	22.7	0.073954					30	14	3	0	0	0	0.5973	1	739	739		52.937	1.744	1	386710			18529	733	12934	12960	20972	20972					0.04235688157723416
GALALTQTW	9	Unmodified	_GALALTQTW_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000206341|P01893|HLA-H	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.76129150390625	2	480.761092	959.507631	0.50937	0.00024489	-0.60622	-0.00029145	-0.09685	-4.6562E-05	480.7607110029436	74.429	1.0135	74.154	73.917	74.931	-0.27573					49	23	3	0	0	0	0.013333	4	8767	8747;8755;8767;8779		176.41	68.323	1	3648600			18530	10471	12935	12961	20973;20974;20975;20976	20975					0.026257848974637454
GALALTQTW	9	Unmodified	_GALALTQTW_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000206341|P01893|HLA-H	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	480.7608337402344	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.399	1	74.135	73.635	74.635	-0.26326								0	0	0	0.014377	1	8778	8778		148.04	60.289	1				18531	10471	12935	12961	20977	20977					0.026257848974637454
GALALTQTW	9	Unmodified	_GALALTQTW_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000206341|P01893|HLA-H	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	480.7610168457031	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.481	1	74.218	73.718	74.718	-0.26326								0	0	0	0.010243	1	8789	8789		166.68	61.932	1				18532	10471	12935	12961	20978	20978					0.026257848974637454
GALALTQTW	9	Unmodified	_GALALTQTW_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000206341|P01893|HLA-H	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	480.7612609863281	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.219	1	74.036	73.536	74.536	-0.18279								0	0	0	0.014377	1	8738	8738		148.04	48.668	1				18533	10471	12935	12961	20979	20979					0.026257848974637454
GALALTQTW	9	Unmodified	_GALALTQTW_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;nc|ENSG00000206341|P01893|HLA-H	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	480.7617492675781	2	480.761092	959.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.313	1	74.13	73.63	74.63	-0.18279								0	0	0	0.0046436	1	8751	8751		176.41	51.816	1				18534	10471	12935	12961	20980	20980					0.026257848974637454
GALAPRSPR	9	Unmodified	_GALAPRSPR_					0	0	0		ENST00000527636.5_3_11:12958765-12958912:+|nuORF	ENST00000527636.5_3_11:12958765-12958912:+|nuORF	ENST00000527636.5_3_11:12958765-12958912:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.77239990234375	2	462.772326	923.530098	3.2521	0.001505	-3.2078	-0.0014845	0.044268	2.0486E-05	462.7707130102802	17.967	0.83086	17.967	17.795	18.626	0					33	16	5	0	0	0	0.75397	1	240	240		42.396	3.1433	1	533790			18535	16157	12936	12962	20981	20981					0.0652742908575874
GALGRLKV	8	Unmodified	_GALGRLKV_					0	0	0		ENSG00000183723|ENST00000394106|CMTM4;nc|ENSG00000183723|Q8IZR5|CMTM4	ENSG00000183723|ENST00000394106|CMTM4	ENSG00000183723|ENST00000394106|CMTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.2687072753906	2	407.268887	812.523222	0.057894	2.3578E-05	-0.097204	-3.9588E-05	-0.03931	-1.601E-05	407.2687141253789	28.678	0.81672	28.678	28.406	29.223	0					50	19	4	0	0	0	0.75307	1	1705	1705		62.978	10.679	1	1627100			18536	9265	12937	12963	20982	20982					0.10946116205184353
GALHSPWPTP	10	Unmodified	_GALHSPWPTP_					0	0	0			REV__ENST00000585812.5_1_17:59445801-59456320:+|nuORF	REV__ENST00000585812.5_1_17:59445801-59456320:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7715454101562	2	531.771991	1061.52943	-1.5846	-0.00084263	0.71459	0.00038	-0.86998	-0.00046263	531.7723135123027	24.693	0.66891	24.646	24.398	25.067	-0.047148					21	14	2	0	0	0	1.0393	1	1097	1097		40.778	6.6056	1	1108000	+		18537	35585	12938	12964	20983	20983					0.0011258964602802735
GALIGLGALL	10	Unmodified	_GALIGLGALL_					0	0	0			REV__ENSG00000244476|ENST00000472091|ERVFRD-1	REV__ENSG00000244476|ENST00000472091|ERVFRD-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2638244628906	2	449.292028	896.569503	0.38513	0.00017304	-0.12523	-5.6264E-05	0.2599	0.00011677	449.2919057539843	61.405	0.65005	61.405	61.108	61.758	0					28	16	2	0	0	0	0.03519	1	7083	7083		44.531	0	1	309080	+		18538	28999	12939	12965	20984	20984					0.11708136316622131
GALLAIRR	8	Unmodified	_GALLAIRR_					0	0	0		ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	ENSG00000150627|ENST00000508596|WDR17	ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.28753662109375	2	435.287611	868.56067	-0.14409	-6.272E-05	-0.3983	-0.00017337	-0.54239	-0.00023609	435.28744784642635	25.847	2.5229	25.677	25.163	27.686	-0.17078					136	63	5	0	0	0	0.95417	2	1247	1237;1247		44.531	0	1	17898000			18539	6144	12940	12966	20985;20986	20986					0.12113207470781617
GALLEDVAHN	10	Unmodified	_GALLEDVAHN_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8237915039062	2	519.764363	1037.51417	-0.75265	-0.0003912	0.88679	0.00046092	0.13414	6.9719E-05	519.7643693243106	82.031	1.2071	82.031	81.671	82.878	0					63	28	3	0	0	0	0.03519	1	10290	10290		58.782	7.5893	1	1229000			18540	7647	12941	12967	20987	20987					-0.0030832194181584782
GALLLALGF	9	Unmodified	_GALLLALGF_					0	0	0			REV__nc|ENSG00000099866|Q13477-4|MADCAM1	REV__nc|ENSG00000099866|Q13477-4|MADCAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2797546386719	2	437.773471	873.53239	0.033949	1.4862E-05	-4.3529	-0.0019056	-4.319	-0.0018907	437.7714397312737	22.069	0.67659	21.867	21.469	22.146	-0.20199					28	13	3	0	0	0	0.024541	1	671	671		14.664	0	1	252710	+		18541	21016	12942	12968	20988	20988					0.09056464770844741
GALLLARR	8	Unmodified	_GALLLARR_					0	0	0			REV__ENSG00000197496|ENST00000359271|SLC2A10	REV__ENSG00000197496|ENST00000359271|SLC2A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2874450683594	2	435.287611	868.56067	-0.66839	-0.00029094	0.19838	8.6352E-05	-0.47001	-0.00020459	435.28766649982805	26.014	2.4628	25.851	25.373	27.835	-0.16331					142	62	4	0	0	0	1.0017	3	1251	1251;1277;1290		37.028	0	1	18390000	+		18542	28310	12943	12969	20989;20990;20991	20989					0.12113207470792986
GALLPRKA	8	Unmodified	_GALLPRKA_					0	0	0			REV__ENSG00000186280|ENST00000335080|KDM4D	REV__ENSG00000186280|ENST00000335080|KDM4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.21929931640625	2	413.268887	824.523222	-0.57205	-0.00023641	0.2635	0.0001089	-0.30855	-0.00012751	413.26938324026565	41.354	0.42538	41.124	40.771	41.196	-0.23029					13	10	2	0	0	0	0.027866	1	3595	3595		26.796	14.589	1	56666	+		18543	27842	12944	12970	20992	20992					0.10394116205179671
GALLPRKA	8	Unmodified	_GALLPRKA_					0	0	0			REV__ENSG00000186280|ENST00000335080|KDM4D	REV__ENSG00000186280|ENST00000335080|KDM4D	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.268887	824.523222	-0.35911	-0.00014841	1.1201	0.00046291	0.76102	0.0003145	413.26940361446765	41.065	0.19572	40.929	40.752	40.947	-0.13553	-0.097567	0.00017746	NaN	26.796	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36560	+		18544	27842	12944	12970							0.10394116205179671
GALLQHVQ	8	Unmodified	_GALLQHVQ_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.7401123046875	2	433.248152	864.481751	-0.087164	-3.7763E-05	-3.3763	-0.0014628	-3.4634	-0.0015005	433.24578512352844	35.107	0.18792	34.921	34.835	35.023	-0.18675					6	4	2	0	0	0	0.027866	1	2623	2623		18.324	1.6194	1	46519	+		18545	23875	12945	12971	20993	20993					0.04408935445849238
GALLQLPL	8	Unmodified	_GALLQLPL_					0	0	0			REV__ENST00000283629.7_1_3:33481464-33481797:-|nuORF	REV__ENST00000283629.7_1_3:33481464-33481797:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.742431640625	2	412.765646	823.516739	1.1035	0.00045547	2.6759	0.0011045	3.7794	0.00156	412.7664776076097	37.334	0.76019	37.334	37.042	37.803	0					35	20	2	0	0	0	0.027866	1	3057	3057		13.775	0	1	108180	+		18546	29904	12946	12972	20994	20994					0.09792178253815109
GALMLLGLL	9	Unmodified	_GALMLLGLL_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7611999511719	2	450.782982	899.55141	-0.26612	-0.00011996	1.4708	0.00066303	1.2047	0.00054307	450.78389798575785	38.853	0.46852	38.754	38.514	38.983	-0.098755					20	12	3	0	0	0	0.024289	1	3314	3314		39.021	0	1	630060	+		18547	22345	12947	12973	20995	20995					0.09761678070253765
GALPQRID	8	Unmodified	_GALPQRID_					0	0	0			REV__ENST00000412356.5_1_17:62082726-62085114:-|nuORF	REV__ENST00000412356.5_1_17:62082726-62085114:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.5411071777344	2	435.245609	868.476666	0.75541	0.00032879	0.88842	0.00038668	1.6438	0.00071547	435.24526955359977	20.166	1.0819	19.943	19.68	20.762	-0.22344					43	21	4	0	0	0	0.027866	1	552	552		35.201	15.841	1	186350	+		18548	31994	12948	12974	20996	20996					0.03716631583222352
GALRKVLP	8	Unmodified	_GALRKVLP_					0	0	0			REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.8890380859375	2	427.284537	852.554522	-0.088823	-3.7953E-05	0.65945	0.00028177	0.57062	0.00024382	427.28466089307034	22.068	0.42742	21.877	21.662	22.089	-0.19072					12	8	2	0	0	0	0.027866	1	756	756		21.702	8.7432	1	26751	+		18549	21539	12949	12975	20997	20997					0.12234689239267027
GALRKVLP	8	Unmodified	_GALRKVLP_					0	0	0			REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	427.284537	852.554522	0.72055	0.00030788	-0.41892	-0.000179	0.30162	0.00012888	427.2841253381406	21.922	0.37919	21.736	21.583	21.962	-0.18547	-0.068762	-0.00078012	NaN	21.702	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19149	+		18550	21539	12949	12975							0.12234689239267027
GALRKVLP	8	Unmodified	_GALRKVLP_					0	0	0			REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.284537	852.554522	-0.13107	-5.6005E-05	0.7181	0.00030683	0.58703	0.00025083	427.2847429580675	22.003	0.38461	21.802	21.614	21.999	-0.20199	-0.0033061	0.00019155	NaN	21.702	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20478	+		18551	21539	12949	12975							0.12234689239267027
GALRPQAQSPD	11	Unmodified	_GALRPQAQSPD_					0	0	0		nc|nan|Q96N68|C18orf15	nc|nan|Q96N68|C18orf15	nc|nan|Q96N68|C18orf15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.29638671875	2	570.293819	1138.57309	-0.0044767	-2.5531E-06	3.8321	0.0021854	3.8276	0.0021829	570.2957444241051	61.377	0.62004	61.171	60.889	61.509	-0.20599					41	14	4	0	0	0	0.93459	1	6865	6865		49.536	1.8787	1	1491400			18552	18857	12950	12976	20998	20998					0.009341543525124507
GALRVLNSYW	10	Unmodified	_GALRVLNSYW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.819091796875	2	589.819473	1177.62439	-0.73024	-0.00043071	1.4178	0.00083626	0.68759	0.00040555	589.820124649595	69.817	0.90707	69.566	69.236	70.143	-0.25063					59	21	4	0	0	0	0.83673	1	8103	8103		58.23	1.5089	1	2480700			18553	8493	12951	12977	20999	20999					0.04268523117229961
GALRVLNSYW	10	Unmodified	_GALRVLNSYW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.819580078125	2	589.819473	1177.62439	-0.61035	-0.00036	1.2392	0.0007309	0.62885	0.00037091	589.8199842203446	69.797	0.89934	69.575	69.266	70.165	-0.22245					63	20	4	0	0	0	0.65479	1	8120	8120		70.816	14.095	1	2633300			18554	8493	12951	12977	21000	21000					0.04268523117229961
GALVPLPH	8	Unmodified	_GALVPLPH_					0	0	0			REV__nc|ENSG00000008441|Q14938-6|NFIX	REV__nc|ENSG00000008441|Q14938-6|NFIX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.8661193847656	2	402.242338	802.470124	-0.20374	-8.1951E-05	-0.049368	-1.9858E-05	-0.2531	-0.00010181	402.2421851280855	44.152	0.53413	44.047	43.853	44.387	-0.10468					20	14	2	0	0	0	0.027866	1	4080	4080		33.493	8.989	1	247920	+		18555	19882	12952	12978	21001	21001					0.060987384225086316
GALVVGKLV	9	Unmodified	_GALVVGKLV_					0	0	0		ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2868347167969	2	428.286746	854.558939	1.224	0.00052422	-1.072	-0.00045914	0.15193	6.5072E-05	428.2861494408152	62.994	1.0832	63.048	62.719	63.803	0.054104					71	28	4	0	0	0	0.72268	1	7268	7268		44.531	2.0566	1	5319800			18556	15789	12953	12979	21002	21002					0.12584153662191966
GANGKVAVIV	10	Unmodified	_GANGKVAVIV_					0	0	0		ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP	ENSG00000275395|ENST00000616721|FCGBP	ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2846374511719	2	464.284734	926.554916	-0.24436	-0.00011345	-0.40772	-0.0001893	-0.65207	-0.00030275	464.2844731676919	24.815	0.90627	24.6	24.336	25.243	-0.21511					35	20	2	0	0	0	1.0781	1	1140	1140		35.618	2.1027	1	3315900			18557	11039	12954	12980	21003	21003					0.08870064168468161
GANIRVDP	8	Unmodified	_GANIRVDP_					0	0	0		ENSG00000124257|ENST00000372518|NEURL2	ENSG00000124257|ENST00000372518|NEURL2	ENSG00000124257|ENST00000372518|NEURL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	421.727783203125	2	421.229959	840.445365	0.42116	0.00017741	2.4602	0.0010363	2.8813	0.0012137	421.2304254079458	25.396	0.96441	25.476	24.871	25.835	0.080088					35	22	3	0	0	0	0.027866	1	1111	1111		12.959	0	1	310880			18558	4037	12955	12981	21004	21004					0.018760585491349957
GANKEAEP	8	Unmodified	_GANKEAEP_					0	0	0			REV__ENSG00000213123|ENST00000325318|DYNLT2B	REV__ENSG00000213123|ENST00000325318|DYNLT2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.6959228515625	2	408.198325	814.382096	0.46004	0.00018779	-2.3769	-0.00097023	-1.9168	-0.00078245	408.19736130748754	36.633	0.63497	36.417	36.015	36.65	-0.21661					29	15	3	0	0	0	0.027866	1	2887	2887		38.806	16.846	1	403430	+		18559	28728	12956	12982	21005	21005					-0.03251926958762397
GANKLGVF	8	Unmodified	_GANKLGVF_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y;REV__USP9X-BLVRB|1|fusion	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5924987792969	2	403.231971	804.449388	-0.59107	-0.00023834	2.0797	0.00083858	1.4886	0.00060025	403.23274477579474	38.49	0.79001	38.271	37.988	38.778	-0.21848					23	21	2	0	0	0	0.027866	1	3121	3121		31.955	12.595	1	86293	+		18560	22118;37773	12957	12983	21006	21006					0.039341480428561226
GANLAGRPR	9	Unmodified	_GANLAGRPR_					0	0	0		ENST00000283921.4_1_7:27211115-27211478:-|nuORF	ENST00000283921.4_1_7:27211115-27211478:-|nuORF	ENST00000283921.4_1_7:27211115-27211478:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7975769042969	2	456.262125	910.509697	0.71752	0.00032738	2.7071	0.0012351	3.4246	0.0015625	456.2633043902739	64.378	0.95355	64.378	63.99	64.944	0					59	25	3	0	0	0	0.024354	1	7664	7664		38.806	23.164	1	804740			18561	11741	12958	12984	21007	21007					0.05086258425933465
GANRIVLE	8	Unmodified	_GANRIVLE_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.2876892089844	2	436.253434	870.492316	-0.16366	-7.1396E-05	-0.116	-5.0604E-05	-0.27965	-0.000122	436.2531606076238	25.734	0.52966	25.563	25.205	25.735	-0.17078					20	12	2	0	0	0	0.027866	1	1258	1258		47.916	14.4	1	148190			18562	1413	12959	12985	21008	21008					0.05188918100270712
GANRIVLE	8	Unmodified	_GANRIVLE_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.253434	870.492316	-0.34966	-0.00015254	0.85645	0.00037363	0.50679	0.00022109	436.2536974742095	25.833	0.72083	25.833	25.403	26.124	0	0.09197	7.1145E-05	NaN	45.952	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316550			18563	1413	12959	12985							0.05188918100270712
GANRIVLE	8	Unmodified	_GANRIVLE_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.253434	870.492316	-0.44153	-0.00019262	0.99423	0.00043374	0.5527	0.00024112	436.2537742766842	25.853	0.75973	25.83	25.443	26.203	-0.023088	0.0881	0.00019136	NaN	45.952	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325010			18564	1413	12959	12985							0.05188918100270712
GANRSNVQ	8	Unmodified	_GANRSNVQ_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.55462646484375	2	423.21484	844.415128	-0.0065216	-2.76E-06	0.62547	0.00026471	0.61895	0.00026195	423.2184827811748	23.941	0.30492	23.761	23.563	23.868	-0.17989					11	6	3	0	0	0	0.027866	1	989	989		3.9852	0	1	26316	+		18565	26330	12960	12986	21009	21009					-0.01330300116046601
GANWYPLPN	9	Unmodified	_GANWYPLPN_					0	0	0			REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;REV__nc|ENSG00000114805|Q4KWH8|PLCH1	REV__nc|ENSG00000114805|Q4KWH8|PLCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7716674804688	2	516.250892	1030.48723	-1.2158	-0.00062765	1.1618	0.00059977	-0.054003	-2.7879E-05	516.2511186641229	24.938	0.56437	24.904	24.636	25.201	-0.034397					23	12	3	0	0	0	0.024294	1	1135	1135		29.15	8.2026	1	123650	+		18566	22146;36582	12961	12987	21010	21010					-0.026793857623488293
GAPGKRVTE	9	Unmodified	_GAPGKRVTE_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.7558898925781	2	457.756341	913.498129	-0.73216	-0.00033515	-1.1413	-0.00052245	-1.8735	-0.0008576	457.75630284194165	20.632	2.1306	20.632	19.689	21.819	0					121	43	5	0	0	0	0.29158	3	563	563;587;599		76.774	7.9873	1	8141900			18567	25793	12962	12988	21011;21012;21013	21011					0.03792016611942017
GAPGKRVTE	9	Unmodified	_GAPGKRVTE_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7560729980469	2	457.756341	913.498129	-0.30544	-0.00013982	-1.6436	-0.00075237	-1.949	-0.00089218	457.75606310955686	20.787	2.3559	20.682	19.932	22.287	-0.10477					122	48	5	0	0	0	0.45795	3	589	577;589;634		62.107	6.2817	1	10305000			18568	25793	12962	12988	21014;21015;21016	21015					0.03792016611942017
GAPGKRVTE	9	Unmodified	_GAPGKRVTE_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.756341	913.498129	1.1269	0.00051583	-0.8115	-0.00037147	0.31535	0.00014436	457.7558556229433	20.666	0.54092	20.734	20.464	21.005	0.068901	-0.042592	3.1888E-06	NaN	76.774	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90287			18569	25793	12962	12988							0.03792016611942017
GAPGKRVTE	9	Unmodified	_GAPGKRVTE_					0	0	0			REV__ENSG00000164692|ENST00000297268|COL1A2	REV__ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.756341	913.498129	-1.2406	-0.0005679	3.9965	0.0018294	2.7559	0.0012615	457.7573142118867	21.273	0.3442	21.06	20.921	21.266	-0.2128	0.28314	0.004405	NaN	76.774	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13523			18570	25793	12962	12988							0.03792016611942017
GAPGPDAPPL	10	Unmodified	_GAPGPDAPPL_					0	0	0		ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2318420410156	2	446.232168	890.449782	0.088406	3.945E-05	-0.63717	-0.00028433	-0.54876	-0.00024488	446.23196670301775	101.18	2.1749	101.19	100.06	102.24	0.0090256					122	51	5	0	0	0	1.1166	2	12948	12900;12948		30.504	2.4566	1	6913800			18571	10986	12963	12989	21017;21018	21018					0.0001752297204120623
GAPGPDAPPL	10	Unmodified	_GAPGPDAPPL_					0	0	0		ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	ENSG00000268041|ENST00000597630|ERFL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	446.2316589355469	2	446.232168	890.449782	0.30845	0.00013764	-1.3943	-0.00062219	-1.0859	-0.00048455	446.23152023452957	101.79	1.2282	101.62	101.15	102.37	-0.17178					92	28	5	0	0	0	1.0541	1	12622	12622		38.806	1.647	1	4822100			18572	10986	12963	12989	21019	21019					0.0001752297204120623
GAPGPPGPPG	10	Unmodified	_GAPGPPGPPG_					0	0	0		ENST00000471862.1_1_2:228162448-228168961:+|nuORF;nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;COL4A3|p.G1491Afs*38|1|0.78|ENSG00000169031|chr2:227308907-227308907|G/-|frameshift_variant	REV__ENSG00000164692|ENST00000297268|COL1A2;nc|ENSG00000169031|Q01955-2|COL4A3;REV__ENSG00000171502|ENST00000370571|COL24A1;REV__nc|ENSG00000160963|Q96A83-2|COL26A1;REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.2051696777344	2	402.205953	802.397353	-0.56388	-0.0002268	-0.30876	-0.00012418	-0.87264	-0.00035098	402.20578555267815	96.135	1.8234	95.979	95.4	97.223	-0.15646					111	41	4	0	0	0	1.0812	1	11870	11870		35.201	1.6851	1	4321200			18573	21946;7893;26575;25793;25365	12964	12990	21020	21020					-0.011750153709044753
GAPGVTRGLS	10	Unmodified	_GAPGVTRGLS_					0	0	0			REV__ENSG00000165606|ENST00000374139|DRGX	REV__ENSG00000165606|ENST00000374139|DRGX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.75341796875	2	457.756341	913.498129	-0.30544	-0.00013982	-1.6436	-0.00075237	-1.949	-0.00089218	457.75606310955686	20.787	2.3559	20.682	19.932	22.287	-0.10477					122	48	5	0	0	0	0.80817	1	554	554		60.118	5.3419	1	10305000	+		18574	25905	12965	12991	21021	21021					0.03792016611953386
GAPLHHLISH	10	Unmodified	_GAPLHHLISH_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2935180664062	2	541.298707	1080.58286	-1.5563	-0.00084241	0.029143	1.5775E-05	-1.5271	-0.00082663	541.2986307948557	39.572	0.49408	39.473	39.234	39.728	-0.098755					23	13	2	0	0	0	0.03519	1	3419	3419		55.504	5.4797	1	528700	+		18575	19984	12966	12992	21022	21022					0.04579387148555725
GAPLLRHSW	9	Unmodified	_GAPLLRHSW_					0	0	0			REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	REV__ENST00000471540.5_1_21:46685245-46685350:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7698364257812	2	518.787976	1035.5614	-1.5309	-0.00079419	-3.3492	-0.0017375	-4.8801	-0.0025317	518.7864067841526	22.159	0.28722	22.233	22.078	22.365	0.073954					11	5	3	0	0	0	0.024457	1	696	696		45.952	18.07	1	43423	+		18576	33178	12967	12993	21023	21023					0.045040021198246905
GAPLPGQPLCP	11	Unmodified	_GAPLPGQPLCP_					0	0	0		SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|40|3|sense	SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|40|3|sense	SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|40|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2960815429688	2	525.276052	1048.53755	0.21594	0.00011343	-1.7732	-0.00093142	-1.5573	-0.00081799	525.7767581853989	81.223	0.37073	81.03	80.76	81.131	-0.19334					12	8	2	0	0	0	0.024738	1	9762	9762		42.396	0	1	146670			18577	38011	12968	12994	21024	21024					0.0152240057113886
GAPLQPPLSL	10	Unmodified	_GAPLQPPLSL_					0	0	0		ENST00000416600.6_1_20:3847373-3847754:+|nuORF	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7921142578125	2	496.792392	991.570232	0.95875	0.0004763	-1.0677	-0.00053045	-0.109	-5.415E-05	496.7918191905324	71.178	1.0514	71.178	70.744	71.795	0					55	26	4	0	0	0	0.45367	1	8614	8614		93.195	24.409	1	2499300			18578	13901	12969	12995	21025	21025					0.07410930965670559
GAPLQPPLSL	10	Unmodified	_GAPLQPPLSL_					0	0	0		ENST00000416600.6_1_20:3847373-3847754:+|nuORF	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	ENST00000416600.6_1_20:3847373-3847754:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.7923889160156	2	496.792392	991.570232	0.18724	9.3017E-05	-0.24241	-0.00012043	-0.055175	-2.741E-05	496.79225615558556	71.234	0.96017	71.245	70.769	71.729	0.010735					56	24	4	0	0	0	0.42446	2	8555	8543;8555		96.19	13.885	1	2314100			18579	13901	12969	12995	21026;21027	21027					0.07410930965670559
GAPPGVQAPLL	11	Unmodified	_GAPPGVQAPLL_					0	0	0			REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF	REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7649230957031	2	510.297842	1018.58113	0.028291	1.4437E-05	-0.47588	-0.00024284	-0.44759	-0.0002284	510.2978007358479	25.279	0.48971	25.359	25.05	25.54	0.08009					26	11	3	0	0	0	0.024738	1	1152	1152		42.396	8.2236	1	69885	+		18580	31827	12970	12996	21028	21028					0.07258333339939327
GAPPGVQAPLL	11	Unmodified	_GAPPGVQAPLL_					0	0	0			REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF	REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.297842	1018.58113	-0.35516	-0.00018124	-0.15471	-7.8948E-05	-0.50987	-0.00026019	510.2976516689168	25.486	0.50206	25.316	24.955	25.457	-0.17078	-0.06574	2.3327E-06	NaN	49.442	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127680	+		18581	31827	12970	12996							0.07258333339939327
GAPPGVQAPLL	11	Unmodified	_GAPPGVQAPLL_					0	0	0			REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF	REV__ENST00000399409.7_1_14:24740416-24740749:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.297842	1018.58113	-0.15431	-7.8746E-05	-0.25713	-0.00013121	-0.41144	-0.00020996	510.2974593525944	25.532	0.50172	25.36	25.034	25.536	-0.17151	-0.021168	-0.00010219	NaN	49.442	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114170	+		18582	31827	12970	12996							0.07258333339939327
GAPPPGTLYIP	11	Unmodified	_GAPPPGTLYIP_					0	0	0			REV__ENST00000375980.8_1_1:15755792-15756005:+|nuORF	REV__ENST00000375980.8_1_1:15755792-15756005:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.2958374023438	2	541.797675	1081.5808	1.3356	0.00072361	4.2559	0.0023059	5.5915	0.0030295	541.7997447674439	18.779	0.7873	18.779	18.48	19.268	0					40	15	5	0	0	0	1.018	1	314	314		32.812	7.2384	1	1083600	+		18583	31346	12971	12997	21029	21029					0.04326913620070627
GAPVRVSR	8	Unmodified	_GAPVRVSR_					0	0	0			REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.52166748046875	2	421.253769	840.492984	2.3506	0.00099018	2.2984	0.00096822	4.649	0.0019584	421.2530292545725	24.58	0.6112	24.399	24.156	24.767	-0.18089					18	13	2	0	0	0	0.027866	1	1087	1087		11.511	0	1	42823	+		18584	31553	12972	12998	21030	21030					0.06635757539993392
GAPVRVSR	8	Unmodified	_GAPVRVSR_					0	0	0			REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	421.253769	840.492984	-0.46121	-0.00019429	0.38161	0.00016076	-0.079597	-3.3531E-05	421.25388719999125	24.312	0.78696	24.312	23.866	24.653	0	0.0017965	-0.00023818	NaN	11.511	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59690	+		18585	31553	12972	12998							0.06635757539993392
GAPVRVSR	8	Unmodified	_GAPVRVSR_					0	0	0			REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	421.253769	840.492984	-1.0414	-0.0004387	1.302	0.00054848	0.26061	0.00010978	421.2540969318947	24.333	0.48984	24.286	24.088	24.578	-0.047148	-0.024763	0.00053726	NaN	11.511	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73722	+		18586	31553	12972	12998							0.06635757539993392
GAPVRVSR	8	Unmodified	_GAPVRVSR_					0	0	0			REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	REV__ENST00000383693.7_1_3:100120740-100120839:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	421.253769	840.492984	0.32611	0.00013737	-3.2048	-0.00135	-2.8787	-0.0012127	421.25343429811204	24.167	1.516	24.245	23.353	24.869	0.078344	-0.065266	-0.0032598	NaN	11.511	48	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100790	+		18587	31553	12972	12998							0.06635757539993392
GAQGGRPSL	9	Unmodified	_GAQGGRPSL_					0	0	0		ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	421.7283020019531	2	421.727584	841.440614	-0.50634	-0.00021354	-0.88015	-0.00037118	-1.3865	-0.00058472	421.7276451111375	28.552	0.88945	28.548	28.117	29.006	-0.0042019					44	20	3	0	0	0	0.16638	2	1672	1661;1672		95.815	13.065	1	1306300			18588	5506	12973	12999	21031;21032	21032					0.013551744063761362
GAQGGRPSL	9	Unmodified	_GAQGGRPSL_					0	0	0		ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	421.727584	841.440614	-1.0107	-0.00042622	-1.1282	-0.00047579	-2.1388	-0.00090201	421.7276577069098	28.586	1.0364	28.586	28.113	29.149	0	0.11583	-7.1681E-07	NaN	95.815	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1294900			18589	5506	12973	12999							0.013551744063761362
GAQGGRPSL	9	Unmodified	_GAQGGRPSL_					0	0	0		ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	421.727584	841.440614	-0.06433	-2.713E-05	-1.459	-0.0006153	-1.5233	-0.00064243	421.72736572067026	28.197	0.90414	28.277	27.795	28.699	0.080811	-0.19301	-0.00027974	NaN	95.815	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468900			18590	5506	12973	12999							0.013551744063761362
GAQKLLVK	8	Unmodified	_GAQKLLVK_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.73779296875	2	428.78437	855.554188	-1.1322	-0.00048546	1.7331	0.00074314	0.60095	0.00025768	428.7849986437675	24.916	0.31008	24.882	24.727	25.037	-0.034395					12	6	2	0	0	0	0.027866	1	1111	1111		42.474	3.6683	1	107990			18591	1952	12974	13000	21033	21033					0.12063269519433106
GAQLKKVE	8	Unmodified	_GAQLKKVE_					0	0	0		ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.7644348144531	2	436.763635	871.512717	-0.18724	-8.1782E-05	0.30143	0.00013165	0.11418	4.987E-05	436.7636697282556	20.209	0.39318	20.104	19.884	20.277	-0.10477					15	7	3	0	0	0	0.59392	1	497	497		76.847	11.043	1	249490			18592	2773	12975	13001	21034	21034					0.071820887600893
GAQLKKVE	8	Unmodified	_GAQLKKVE_					0	0	0		ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.763635	871.512717	-0.041259	-1.802E-05	0.49503	0.00021621	0.45377	0.00019819	436.763547606526	20.003	0.44299	20.003	19.782	20.225	0	-0.050605	0.00013901	NaN	76.847	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215150			18593	2773	12975	13001							0.071820887600893
GAQRPWLLRRL	11	Unmodified	_GAQRPWLLRRL_					0	0	0			REV__ENST00000280083.7_2_14:39736586-39746165:+|nuORF	REV__ENST00000280083.7_2_14:39736586-39746165:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.8880615234375	3	455.945717	1364.81532	-0.42196	-0.00019239	2.2623	0.0010315	1.8403	0.00083908	455.9469187139507	37.518	0.1768	37.454	37.379	37.556	-0.063389					5	4	2	0	0	0	0.024727	1	3067	3067		23.378	0	1	26699	+		18594	29873	12976	13002	21035	21035					0.14750649219172374
GARGRRVILQ	10	Unmodified	_GARGRRVILQ_					0	0	0			REV__ENST00000316724.9_1_2:127864705-127864909:-|nuORF	REV__ENST00000316724.9_1_2:127864705-127864909:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.3529052734375	2	563.351806	1124.68906	0.039323	2.2152E-05	2.7136	0.0015287	2.753	0.0015509	563.3530233374349	74.444	2.3485	74.185	73.86	76.209	-0.25887					114	59	3	0	0	0	0.98754	1	9094	9094		47.657	3.2801	1	5780100	+		18595	30286	12977	13003	21036	21036					0.13170142713875066
GARLAGPLL	9	Unmodified	_GARLAGPLL_					0	0	0			REV__ENSG00000183208|ENST00000329600|GDPGP1	REV__ENSG00000183208|ENST00000329600|GDPGP1	MSMS	OPSCC_39_ClassI_Rep-2	2	434.2742614746094	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.234	1	83.143	82.643	83.643	-0.090454								0	0	0	0.63103	1	10369	10369		35.201	3.6218	1		+		18596	27552	12978	13004	21037	21037					0.09518098859621205
GARRAGKK	8	Unmodified	_GARRAGKK_					0	0	0		ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.23773193359375	2	422.26721	842.519868	-0.76541	-0.00032321	-2.7526	-0.0011623	-3.518	-0.0014855	422.2660333144253	32.846	0.22637	32.846	32.753	32.979	0					7	5	2	0	0	0	0.027866	1	2328	2328		20.482	5.8177	1	40862			18597	11572	12979	13005	21038	21038					0.09230866151187911
GARRAGKK	8	Unmodified	_GARRAGKK_					0	0	0		ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.26721	842.519868	-0.59606	-0.0002517	-5.1664	-0.0021816	-5.7625	-0.0024333	422.2649087366101	32.677	0.32978	32.689	32.488	32.818	0.011799	-0.07829	-0.0010283	NaN	26.796	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63135			18598	11572	12979	13005							0.09230866151187911
GASCGAAG	8	Unmodified	_GASCGAAG_					0	0	0			REV__ENST00000475328.5_1_2:74648864-74649479:+|nuORF	REV__ENST00000475328.5_1_2:74648864-74649479:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.3058471679688	1	593.234787	592.22751	-1.1421	-0.00067752	1.0377	0.00061561	-0.10437	-6.1917E-05	593.2361307276109	62.796	1.1584	62.612	62.451	63.61	-0.18386					71	33	3	0	0	0	0.027866	1	7171	7171		19.36	15.044	1	3551700	+		18599	33292	12980	13006	21039	21039					-0.08491454644968144
GASCGAAG	8	Unmodified	_GASCGAAG_					0	0	0			REV__ENST00000475328.5_1_2:74648864-74649479:+|nuORF	REV__ENST00000475328.5_1_2:74648864-74649479:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.3065185546875	1	593.234787	592.22751	-0.62697	-0.00037194	2.6676	0.0015825	2.0406	0.0012105	593.236206455859	62.879	0.74265	62.62	62.496	63.239	-0.25824					35	20	2	0	0	0	0.027866	1	7143	7143		19.36	4.6959	1	2603300	+		18600	33292	12980	13006	21040	21040					-0.08491454644968144
GASKAVFLW	9	Unmodified	_GASKAVFLW_					0	0	0		nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.773681640625	2	489.774003	977.533452	-0.56526	-0.00027685	0.82834	0.0004057	0.26307	0.00012885	489.7741270420526	65.801	0.97864	65.56	65.207	66.186	-0.24145					63	23	4	0	0	0	0.03849	3	7521	7508;7521;7533		134.81	14.19	1	2557700			18601	2955	12981	13007	21041;21042;21043	21042					0.04378679139745145
GASKAVFLW	9	Unmodified	_GASKAVFLW_					0	0	0		nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.77362060546875	2	489.774003	977.533452	-0.9241	-0.0004526	1.0286	0.00050379	0.10452	5.1193E-05	489.77427240476146	65.741	0.98141	65.528	65.135	66.117	-0.21327					64	23	4	0	0	0	0.096521	2	7512	7512;7524		111.65	26.289	1	2575700			18602	2955	12981	13007	21044;21045	21044					0.04378679139745145
GASKAVFLW	9	Unmodified	_GASKAVFLW_					0	0	0		nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	nc|ENSG00000109046|Q9Y6I7-2|WSB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.7740783691406	2	489.774003	977.533452	-0.21579	-0.00010569	0.53822	0.00026361	0.32243	0.00015792	489.77397660241695	65.795	1.0452	65.544	65.189	66.234	-0.25112					59	25	4	0	0	0	0.27161	2	7522	7500;7522		79.451	2.6044	1	2256300			18603	2955	12981	13007	21046;21047	21047					0.04378679139745145
GASKKKKA	8	Unmodified	_GASKKKKA_					0	0	0		ENST00000589053.1_1_18:33077601-33077838:-|nuORF;ENST00000585971.1_1_18:33069229-33077838:-|nuORF;ENST00000586449.1_1_18:33067727-33077880:-|nuORF;ENST00000283410.4_1_18:33059207-33077880:-|nuORF;ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-3|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C	ENST00000589053.1_1_18:33077601-33077838:-|nuORF	ENST00000589053.1_1_18:33077601-33077838:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.53973388671875	2	409.266345	816.518136	1.3895	0.00056867	-2.1394	-0.00087556	-0.74986	-0.00030689	409.26525274392276	19.976	0.24612	19.776	19.603	19.85	-0.2001					9	4	3	0	0	0	0.027866	1	479	479		3.9852	2.7801	1	55372			18604	6344	12982	13008	21048	21048					0.10253812342557467
GASKKKKA	8	Unmodified	_GASKKKKA_					0	0	0		ENST00000589053.1_1_18:33077601-33077838:-|nuORF;ENST00000585971.1_1_18:33069229-33077838:-|nuORF;ENST00000586449.1_1_18:33067727-33077880:-|nuORF;ENST00000283410.4_1_18:33059207-33077880:-|nuORF;ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-3|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C	ENST00000589053.1_1_18:33077601-33077838:-|nuORF	ENST00000589053.1_1_18:33077601-33077838:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	409.266345	816.518136	0.33851	0.00013854	-3.6743	-0.0015038	-3.3358	-0.0013652	409.2642419211396	19.861	0.34191	19.7	19.529	19.871	-0.16079	-0.043218	-0.0012967	NaN	3.9852	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40488			18605	6344	12982	13008							0.10253812342557467
GASLPDPPIV	10	Unmodified	_GASLPDPPIV_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|36|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|36|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|36|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7844543457031	2	483.26875	964.522947	0.38222	0.00018472	-0.050454	-2.4383E-05	0.33177	0.00016033	483.2685468393142	72.18	0.7785	72.19	71.915	72.693	0.0097733					26	19	2	0	0	0	0.03519	1	8770	8770		42.396	0	1	416970			18606	38028	12983	13009	21049	21049					0.03926651694666816
GASTSIGAGVL	11	Unmodified	_GASTSIGAGVL_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7556457519531	2	466.756007	931.497461	-0.57238	-0.00026716	0.87233	0.00040716	0.29995	0.00014	466.7562952316805	58.386	0.87393	58.199	57.919	58.793	-0.18705					46	23	3	0	0	0	0.56861	1	6571	6571		71.877	11.947	1	3163000	+		18607	20390	12984	13010	21050	21050					0.028971771722467565
GASTSIGAGVL	11	Unmodified	_GASTSIGAGVL_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.756007	931.497461	0.11802	5.5085E-05	0.13263	6.1905E-05	0.25064	0.00011699	466.75596300629115	58.152	0.80722	58.152	57.872	58.679	0	0.0094582	-0.00016065	NaN	71.877	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3594500	+		18608	20390	12984	13010							0.028971771722467565
GASTSIGAGVL	11	Unmodified	_GASTSIGAGVL_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	466.756007	931.497461	-0.57238	-0.00026716	0.87233	0.00040716	0.29995	0.00014	466.7562952316805	58.386	0.87393	58.199	57.919	58.793	-0.18705	0.056869	0.00052987	NaN	71.877	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3163000	+		18609	20390	12984	13010							0.028971771722467565
GASTSIGAGVL	11	Unmodified	_GASTSIGAGVL_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.756007	931.497461	0.46851	0.00021868	-0.079014	-3.688E-05	0.38949	0.0001818	466.75585093847485	57.985	0.8744	58.076	57.797	58.671	0.091217	-0.066327	-0.00035822	NaN	71.877	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3459800	+		18610	20390	12984	13010							0.028971771722467565
GATAWLPTT	9	Unmodified	_GATAWLPTT_					0	0	0			REV__ENSG00000106780|ENST00000373930|MEGF9	REV__ENSG00000106780|ENST00000373930|MEGF9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2396545410156	2	459.239993	916.465432	1.363	0.00062595	-2.4281	-0.0011151	-1.0651	-0.00048912	459.2388106976969	110.5	0.71297	110.5	110.2	110.91	0					46	22	3	0	0	0	0.92825	1	14056	14056		30.504	3.7075	1	112900	+		18611	21643	12985	13011	21051	21051					0.003858094890802022
GATGKKKK	8	Unmodified	_GATGKKKK_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;ENST00000549136.1_1_12:95869884-95877058:+|nuORF	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.5392761230469	2	409.266345	816.518136	0.75243	0.00030794	-0.82927	-0.00033939	-0.076844	-3.145E-05	409.26582611942416	19.978	0.29614	19.754	19.582	19.878	-0.22344					13	5	3	0	0	0	0.027866	1	469	469		4.3163	3.2208	1	52854			18612	3088	12986	13012	21052	21052					0.10253812342568835
GATKWPAT	8	Unmodified	_GATKWPAT_					0	0	0		ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	ARL6IP6|p.C48Afs*83|1|0.2|ENSG00000177917|chr2:152718765-152718765|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2608642578125	2	416.221603	830.428653	-0.47807	-0.00019898	3.9457	0.0016423	3.4676	0.0014433	416.2224710783262	20.704	1.0682	20.704	20.225	21.293	0					37	21	3	0	0	0	0.027866	1	527	527		65.803	23.407	1	44165			18613	129	12987	13013	21053	21053					0.006655576631828808
GATRAPEI	8	Unmodified	_GATRAPEI_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.57916259765625	2	407.72451	813.434466	0.54624	0.00022272	-0.024586	-1.0025E-05	0.52166	0.00021269	407.72443613644305	34.509	0.50893	34.559	34.329	34.838	0.050255					31	12	4	0	0	0	0.027866	1	2501	2501		35.618	19.145	1	141000	+		18614	24914	12988	13014	21054	21054					0.020286561748548593
GATRIPSAAPG	11	Unmodified	_GATRIPSAAPG_					0	0	0			REV__ENST00000396081.5_1_7:35734290-35734692:-|nuORF	REV__ENST00000396081.5_1_7:35734290-35734692:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.2743835449219	2	499.274898	996.535243	0.05054	2.5234E-05	-0.34811	-0.0001738	-0.29757	-0.00014857	499.27467580145367	20.201	0.98216	19.978	19.631	20.613	-0.22344					46	19	4	0	0	0	0.97926	1	510	510		41.427	0.64845	1	721770	+		18615	31723	12989	13015	21055	21055					0.036836881577073655
GATRSEPQKG	10	Unmodified	_GATRSEPQKG_					0	0	0			REV__ENST00000221566.6_1_19:2754860-2755205:-|nuORF	REV__ENST00000221566.6_1_19:2754860-2755205:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.7671508789062	2	515.767437	1029.52032	-0.94597	-0.0004879	1.7914	0.00092396	0.84546	0.00043606	515.7673080752585	25.516	1.6403	25.516	24.563	26.203	0					52	38	2	0	0	0	0.03519	1	1145	1145		35.152	0	1	150610	+		18616	29347	12990	13016	21056	21056					0.0067419628969673795
GAVAGIVTGVL	11	Unmodified	_GAVAGIVTGVL_					0	0	0		ENST00000415495.5_1_19:42311603-42315272:+|nuORF;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000170956|P40198-3|CEACAM3;ENSG00000105352|ENST00000221954|CEACAM4	ENST00000415495.5_1_19:42311603-42315272:+|nuORF	ENST00000415495.5_1_19:42311603-42315272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7925109863281	2	478.792392	955.570232	0.24332	0.0001165	-0.28219	-0.00013511	-0.03887	-1.8611E-05	478.79209530348226	50.971	0.79356	50.695	50.48	51.274	-0.27643					40	20	3	0	0	0	0.90489	1	5209	5209		51.335	0	1	2022700			18617	8099	12991	13017	21057	21057					0.09066930965661868
GAVDSTVKVW	10	Unmodified	_GAVDSTVKVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.285400390625	2	531.284931	1060.55531	-0.7111	-0.00037779	-0.024911	-1.3235E-05	-0.73601	-0.00039103	531.2845955726034	55.032	0.63285	54.886	54.424	55.057	-0.14609					50	16	6	0	0	0	0.42599	1	5887	5887		96.034	29.604	1	2081600			18618	4539	12992	13018	21058	21058					0.02745439097657254
GAVDSTVKVW	10	Unmodified	_GAVDSTVKVW_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2858276367188	2	531.284931	1060.55531	0.13563	7.2058E-05	-1.1323	-0.00060157	-0.99667	-0.00052951	531.2839860983568	55.119	0.61544	54.913	54.431	55.047	-0.20613					43	16	5	0	0	0	0.52765	1	5887	5887		85.161	13.865	1	2242100			18619	4539	12992	13018	21059	21059					0.02745439097657254
GAVFVGKDDI	10	Unmodified	_GAVFVGKDDI_					0	0	0			REV__ENST00000560252.5_1_15:85191115-85197505:-|nuORF	REV__ENST00000560252.5_1_15:85191115-85197505:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.77117919921875	2	510.771657	1019.52876	-0.66248	-0.00033838	0.55539	0.00028368	-0.10709	-5.4699E-05	510.7718822219075	84.49	1.9784	84.517	83.641	85.619	0.026558					134	46	5	0	0	0	0.42446	1	10469	10469		96.19	0.37527	1	13872000	+		18620	27080	12993	13019	21060	21060					0.01977750206322071
GAVKHHQVLL	10	Unmodified	_GAVKHHQVLL_					0	0	0		ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	ENSG00000106537|ENST00000262067|TSPAN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7978515625	2	551.330008	1100.64546	-0.8572	-0.0004726	3.8078	0.0020993	2.9506	0.0016267	551.3319079107729	53.134	0.18613	52.986	52.873	53.06	-0.14723					6	4	2	0	0	0	0.03519	1	5708	5708		37.159	5.2042	1	40969			18621	2795	12994	13020	21061	21061					0.09916533216733114
GAVLANAGNI	10	Unmodified	_GAVLANAGNI_					0	0	0		ENST00000220244.7_1_15:81241369-81241618:+|nuORF	ENST00000220244.7_1_15:81241369-81241618:+|nuORF	ENST00000220244.7_1_15:81241369-81241618:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76678466796875	2	450.250892	898.48723	-0.10192	-4.5888E-05	0.22299	0.0001004	0.12108	5.4514E-05	450.2508797506978	35.51	0.62062	35.295	34.95	35.571	-0.21555					37	15	3	0	0	0	0.03519	1	2662	2662		44.117	0	1	890790			18622	11176	12995	13021	21062	21062					0.03392614237657199
GAVPKRKD	8	Unmodified	_GAVPKRKD_					0	0	0		BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|3|fusion	BIRC6-SPAST|3|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7928466796875	2	435.761426	869.5083	-0.2049	-8.9286E-05	0.33893	0.00014769	0.13404	5.8408E-05	435.7614548778219	33.058	0.57268	32.827	32.503	33.075	-0.23107					20	13	2	0	0	0	0.027866	1	2360	2360		19.36	0	1	156120			18623	187	12996	13022	21063	21063					0.06832624337187099
GAVPRVTF	8	Unmodified	_GAVPRVTF_					0	0	0			REV__nc|ENSG00000139287|Q8IWU9-2|TPH2	REV__nc|ENSG00000139287|Q8IWU9-2|TPH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.73480224609375	2	423.745245	845.475937	0.55965	0.00023715	0.98836	0.00041881	1.548	0.00065596	423.74496139541026	37.283	0.47872	37.283	37.081	37.559	0					26	12	3	0	0	0	0.027866	1	3030	3030		18.324	4.5491	1	301780	+		18624	23930	12997	13023	21064	21064					0.04701836934179937
GAVRENYTW	9	Unmodified	_GAVRENYTW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.2642211914062	2	548.26453	1094.51451	-0.1015	-5.5651E-05	-0.59972	-0.0003288	-0.70122	-0.00038446	548.2641849123255	45.926	0.80438	45.829	45.564	46.368	-0.096649					69	21	4	0	0	0	0.030064	4	4403	4379;4391;4403;4414		141.52	51.092	1	13003000			18625	935	12998	13024	21065;21066;21067;21068	21067					-0.028969022219598628
GAVRENYTW	9	Unmodified	_GAVRENYTW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.2644653320312	2	548.26453	1094.51451	-0.36389	-0.00019951	-0.24473	-0.00013418	-0.60862	-0.00033368	548.2643512668151	46.209	1.11	45.948	45.593	46.704	-0.26118					86	29	4	0	0	0	0.030064	6	4425	4402;4414;4425;4438;4451;4464		141.52	50.744	1	9391500			18626	935	12998	13024	21069;21070;21071;21072;21073;21074	21071					-0.028969022219598628
GAVRENYTW	9	Unmodified	_GAVRENYTW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.264404296875	2	548.26453	1094.51451	-1.021	-0.00055976	0.12934	7.0911E-05	-0.89163	-0.00048885	548.2646063762204	46.097	1.0055	45.895	45.563	46.569	-0.20226					79	27	4	0	0	0	0.03666	5	4402	4390;4402;4413;4425;4446		136.27	33.495	1	13312000			18627	935	12998	13024	21075;21076;21077;21078;21079	21076					-0.028969022219598628
GAVRGLNY	8	Unmodified	_GAVRGLNY_					0	0	0		ENST00000478954.1_1_7:150210046-150210850:-|nuORF;nc|ENSG00000082146|Q9C0K7-3|STRADB;STRADB|p.S327Mfs*46|1|0.11|ENSG00000082146|chr2:201478511-201478511|G/-|frameshift_variant;nc|ENSG00000082146|Q9C0K7-2|STRADB;ENSG00000082146|ENST00000194530|STRADB	ENST00000478954.1_1_7:150210046-150210850:-|nuORF	ENST00000478954.1_1_7:150210046-150210850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.7586975097656	2	425.232502	848.450451	0.28583	0.00012154	-0.04648	-1.9765E-05	0.23935	0.00010178	425.232356538263	31.912	0.8046	31.676	31.411	32.216	-0.23667					33	18	2	0	0	0	0.027866	1	2126	2126		12.959	5.2689	1	402010			18628	15158	12999	13025	21080	21080					0.020163624117458312
GAVTSILLLF	10	Unmodified	_GAVTSILLLF_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.3208618164062	2	517.318243	1032.62193	-0.13052	-6.7522E-05	2.3675	0.0012248	2.237	0.0011572	517.3192619937439	67.966	1.4502	67.966	67.606	69.056	0					96	37	4	0	0	0	0.47726	1	8124	8124		90.777	0.40684	1	11420000	+		18629	27752	13000	13026	21081	21081					0.10692674659571821
GAVTSILLLF	10	Unmodified	_GAVTSILLLF_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.3193969726562	2	517.318243	1032.62193	0.073888	3.8224E-05	2.0961	0.0010844	2.17	0.0011226	517.3191111316022	68.321	1.4221	68.029	67.588	69.01	-0.29267					100	35	5	0	0	0	0.57825	1	8153	8153		79.451	7.5735	1	11301000	+		18630	27752	13000	13026	21082	21082					0.10692674659571821
GAVTSILLLF	10	Unmodified	_GAVTSILLLF_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.319580078125	2	517.318243	1032.62193	-0.15929	-8.2401E-05	2.2673	0.0011729	2.108	0.0010905	517.3191978538748	68.064	1.6485	68.083	67.743	69.392	0.018913					110	43	4	0	0	0	0.36026	1	8063	8063		102.77	12.404	1	12270000	+		18631	27752	13000	13026	21083	21083					0.10692674659571821
GAWEQGPL	8	Unmodified	_GAWEQGPL_					0	0	0			REV__ENST00000307564.8_1_9:117099024-117099306:-|nuORF	REV__ENST00000307564.8_1_9:117099024-117099306:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.27667236328125	2	429.211235	856.407917	0.29605	0.00012707	3.9856	0.0017107	4.2817	0.0018377	429.2128628181446	43.216	0.77253	43.104	42.654	43.426	-0.11253					34	20	2	0	0	0	0.027866	1	3910	3910		92.191	3.5478	1	259010	+		18632	30140	13001	13027	21084	21084					-0.026030327164789924
GAYKYIQELW	10	Unmodified	_GAYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	635.8275756835938	2	635.826963	1269.63937	-1.3149	-0.00083606	1.353	0.00086026	0.038058	2.4198E-05	635.8277375713415	73.284	1.0154	73.007	72.669	73.685	-0.2769					90	24	5	0	0	0	0.1333	6	8600	8578;8588;8600;8612;8626;8640		129.42	66.115	1	8257400			18633	8493	13002	13028	21085;21086;21087;21088;21089;21090	21087					0.015339701945549677
GAYKYIQELW	10	Unmodified	_GAYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	635.8262329101562	2	635.826963	1269.63937	-0.71447	-0.00045428	0.52539	0.00033406	-0.18907	-0.00012022	635.8272542086842	73.343	0.96326	73.078	72.724	73.687	-0.26479					85	23	5	0	0	0	0.055122	5	8628	8605;8616;8628;8642;8654		146.79	71.742	1	10055000			18634	8493	13002	13028	21091;21092;21093;21094;21095	21093					0.015339701945549677
GAYKYIQELW	10	Unmodified	_GAYKYIQELW_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	635.826416015625	2	635.826963	1269.63937	-0.69532	-0.0004421	0.5775	0.00036719	-0.11782	-7.4911E-05	635.827269666988	73.033	1.0981	72.835	72.497	73.595	-0.1981					101	26	5	0	0	0	0.10407	5	8573	8549;8560;8573;8585;8598		134.77	73.074	1	8729200			18635	8493	13002	13028	21096;21097;21098;21099;21100	21098					0.015339701945549677
GCAVKLEYQQL	11	Unmodified	_GCAVKLEYQQL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8917541503906	3	417.884913	1250.63291	-0.73413	-0.00030678	1.3865	0.00057941	0.65241	0.00027263	417.88654356444795	34.013	0.83006	33.838	33.583	34.413	-0.17557					27	20	2	0	0	0	0.024757	1	2425	2425		25.892	2.5138	1	94546	+		18636	28058	13003	13029	21101	21101					0.017617089715486145
GCCCRCCC	8	Unmodified	_GCCCRCCC_					0	0	0			REV__ENST00000595840.1_1_19:18507709-18508276:-|nuORF	REV__ENST00000595840.1_1_19:18507709-18508276:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7749938964844	2	425.6014	849.188246	-0.086475	-3.6804E-05	2.8425	0.0012098	2.756	0.001173	425.60210788711584	42.012	0.16597	42.012	41.921	42.087	0					8	4	3	0	0	0	0.027866	1	3835	3835		9.4706	4.7888	1	24579	+		18637	30599	13004	13030	21102	21102					-0.2423802885002715
GCCGYGHD	8	Unmodified	_GCCGYGHD_					0	0	0			REV__ENSG00000186930|ENST00000334897|KRTAP6-2	REV__ENSG00000186930|ENST00000334897|KRTAP6-2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2483825683594	2	406.128531	810.242508	0.9491	0.00038546	-3.8546	-0.0015655	-2.9055	-0.00118	406.126329029645	87.941	0.39566	87.805	87.516	87.912	-0.13613					13	9	2	0	0	0	0.027866	1	10673	10673		4.3163	4.3163	1	98796	+		18638	27898	13005	13031	21103	21103					-0.1702033083928427
GCFTLHFVI	9	Carbamidomethyl (C)	_GC(Carbamidomethyl (C))FTLHFVI_	GC(1)FTLHFVI		GC(41)FTLHFVI		0	1	0			REV__ENSG00000176231|ENST00000322107|OR10H4	REV__ENSG00000176231|ENST00000322107|OR10H4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.2765502929688	2	547.278595	1092.54264	-1.4898	-0.00081531	-2.5385	-0.0013893	-4.0283	-0.0022046	547.2771932535435	30.72	3.7101	30.72	29.611	33.321	0					193	92	4	0	0	0	0.78069	1	1940	1940		40.573	6.4001	1	3598800	+		18639	27008	13006	13032	21104	21104	356				6.704433781123953E-05
GCGKSVHRRS	10	Unmodified	_GCGKSVHRRS_					0	0	0		ENST00000374481.7_1_2:204600867-204600957:+|nuORF	ENST00000374481.7_1_2:204600867-204600957:+|nuORF	ENST00000374481.7_1_2:204600867-204600957:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.783447265625	2	543.782899	1085.55124	2.935	0.001596	0.94757	0.00051527	3.8825	0.0021113	543.7829883632025	16.575	0.46167	16.575	16.413	16.874	0					32	15	3	0	0	0	1.1179	1	84	84		19.997	2.6318	1	75978			18640	13117	13007	13033	21105	21105					0.011890711229625595
GCLKCKII	8	Unmodified	_GCLKCKII_					0	0	0		nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	nc|ENSG00000173200|Q460N3-2|PARP15	nc|ENSG00000173200|Q460N3-2|PARP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.25238037109375	2	439.253534	876.492515	0.31156	0.00013685	-2.6464	-0.0011625	-2.3349	-0.0010256	439.25231035470904	90.063	1.0299	90.046	89.541	90.571	-0.016708					62	24	4	0	0	0	1.0574	1	11363	11363		21.702	2.3424	1	1995100			18641	8351	13008	13034	21106	21106					0.04932878504268956
GCSPCDCD	8	Unmodified	_GCSPCDCD_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4;nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2303771972656	2	400.106407	798.19826	0.2361	9.4465E-05	2.7546	0.0011021	2.9907	0.0011966	400.10605966339523	22.038	0.14451	21.963	21.89	22.035	-0.075296					4	2	2	0	0	0	0.027866	1	718	718		3.9852	2.5204	1	6441			18642	1952	13009	13035	21107	21107					-0.20891103047790693
GDADIRLW	8	Unmodified	_GDADIRLW_					0	0	0		nc|ENSG00000196730|P53355-3|DAPK1;ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1	nc|ENSG00000196730|P53355-3|DAPK1	nc|ENSG00000196730|P53355-3|DAPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7743835449219	2	473.243067	944.47158	0.14554	6.8876E-05	-1.4626	-0.00069214	-1.317	-0.00062327	473.2414356298975	36.906	0.27894	36.944	36.762	37.041	0.038044					9	6	2	0	0	0	0.027866	1	2917	2917		20.482	0	1	102070			18643	9916	13010	13036	21108	21108					-0.002876722793985209
GDAGWRSV	8	Unmodified	_GDAGWRSV_					0	0	0		chr11:61313706-61314047|125|11.15|0.66|4.09|-|1|DDB1,DDB1|2	chr11:61313706-61314047|125|11.15|0.66|4.09|-|1|DDB1,DDB1|2	chr11:61313706-61314047|125|11.15|0.66|4.09|-|1|DDB1,DDB1|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5180358886719	2	424.206484	846.398415	-0.51165	-0.00021704	0.89299	0.00037881	0.38135	0.00016177	424.20674717805076	30.326	1.007	30.148	29.824	30.831	-0.17818					31	23	2	0	0	0	0.027866	1	1986	1986		37.159	6.6555	1	77249			18644	308	13011	13037	21109	21109					-0.03092801002003398
GDAHFAGMH	9	Unmodified	_GDAHFAGMH_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7718811035156	2	471.697969	941.381385	-0.31333	-0.0001478	3.0042	0.0014171	2.6909	0.0012693	471.69931897298545	40.095	0.47987	40.118	39.907	40.387	0.023003					19	12	2	0	0	0	0.024262	1	3473	3473		30.504	0	1	223350			18645	5420	13012	13038	21110	21110					-0.09165044879455309
GDAIAEELVS	10	Unmodified	_GDAIAEELVS_					0	0	0			REV__ENSG00000159650|ENST00000290868|UROC1	REV__ENSG00000159650|ENST00000290868|UROC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2742614746094	2	502.250754	1002.48696	-0.8216	-0.00041265	-1.4349	-0.00072068	-2.2565	-0.0011333	502.24991078191647	34.593	0.71791	34.418	34.128	34.846	-0.17557					35	17	3	0	0	0	0.03519	1	2566	2566		20.947	1.587	1	484820	+		18646	25267	13013	13039	21111	21111					-0.014188502728416097
GDAKWIQSVPI	11	Unmodified	_GDAKWIQSVPI_					0	0	0		ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.8998107910156	3	405.224034	1212.65027	0.67291	0.00027268	0.83286	0.0003375	1.5058	0.00061018	405.22553304155383	23.774	0.35347	23.572	23.438	23.792	-0.20193					11	7	2	0	0	0	0.024768	1	988	988		21.78	0	1	19213			18647	2670	13014	13040	21112	21112					0.0524537256885651
GDALDLKRA	9	Unmodified	_GDALDLKRA_					0	0	0			REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF	REV__ENST00000559845.5_1_15:58724261-58837965:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7674255371094	2	479.769448	957.524344	-0.33315	-0.00015983	-0.77908	-0.00037378	-1.1122	-0.00053361	479.76893590352813	33.52	0.46415	33.526	33.223	33.687	0.0066261					18	12	2	0	0	0	0.024487	1	2386	2386		17.365	0	1	167400	+		18648	35128	13015	13041	21113	21113					0.043882857834205424
GDALHLKF	8	Unmodified	_GDALHLKF_					0	0	0			REV__RBPJL|p.T249K|1|0.39|ENSG00000124232|chr20:45313594-45313594|C/A|missense_variant	REV__RBPJL|p.T249K|1|0.39|ENSG00000124232|chr20:45313594-45313594|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2817077636719	2	450.750527	899.486502	0.41867	0.00018872	-1.2526	-0.0005646	-0.8339	-0.00037588	450.74904473898954	51.036	0.47722	51.036	50.845	51.323	0					22	12	3	0	0	0	0.027866	1	5395	5395		18.324	0	1	132910	+		18649	37432	13016	13042	21114	21114					0.03273819588616789
GDARRWII	8	Unmodified	_GDARRWII_					0	0	0			REV__ENSG00000144619|ENST00000418658|CNTN4	REV__ENSG00000144619|ENST00000418658|CNTN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2633361816406	2	493.780151	985.545748	0.29444	0.00014539	-1.9903	-0.00098276	-1.6958	-0.00083737	493.77891633708913	75.222	0.63015	75.046	74.604	75.234	-0.17548					26	14	3	0	0	0	0.027866	1	8818	8818		24.203	0	1	282240	+		18650	24346	13017	13043	21115	21115					0.05239715602795059
GDARVSHQ	8	Unmodified	_GDARVSHQ_					0	0	0		ENST00000514042.1_1_5:79368411-79378328:-|nuORF	ENST00000514042.1_1_5:79368411-79378328:-|nuORF	ENST00000514042.1_1_5:79368411-79378328:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.2878112792969	2	435.21484	868.415128	-0.16282	-7.0863E-05	-4.1862	-0.0018219	-4.3491	-0.0018928	435.2149367849016	26.062	1.0659	25.893	25.7	26.766	-0.16816					62	28	3	0	0	0	0.027866	1	1284	1284		20.947	0	1	480960			18651	15875	13018	13044	21116	21116					-0.024343001160445965
GDAVGTLSQL	10	Unmodified	_GDAVGTLSQL_					0	0	0		nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF;ENST00000552943.5_1_16:704926-706047:+|nuORF	nc|ENSG00000161996|Q96KV7-3|WDR90	nc|ENSG00000161996|Q96KV7-3|WDR90	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.21710205078125	2	480.753464	959.492375	0.56384	0.00027107	0.30739	0.00014778	0.87122	0.00041884	480.7536699493718	37.125	0.50835	36.916	36.645	37.153	-0.2092					24	12	3	0	0	0	0.03519	1	2953	2953		52.937	20.982	1	225970			18652	13966	13019	13045	21117	21117					0.011008733096218748
GDCVEFDD	8	Unmodified	_GDCVEFDD_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2691345214844	2	450.158008	898.301463	-0.8242	-0.00037102	3.6718	0.0016529	2.8476	0.0012819	450.1585562223358	38.033	0.33859	37.95	37.777	38.116	-0.082516					16	9	3	0	0	0	0.027866	1	3169	3169		26.796	0	1	99974	+		18653	22910	13020	13046	21118	21118					-0.1517557606397304
GDDSIRYPY	9	Unmodified	_GDDSIRYPY_					0	0	0		ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	ENSG00000141934|ENST00000434325|PLPP2	ENSG00000141934|ENST00000434325|PLPP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2446899414062	2	543.248546	1084.48254	-0.01577	-8.5669E-06	-3.9445	-0.0021428	-3.9603	-0.0021514	543.2444413470183	67.132	3.6672	66.884	66.511	70.178	-0.24839					172	93	3	0	0	0	0.59099	1	7764	7764		53.351	2.016	1	2240700			18654	5527	13021	13047	21119	21119					-0.05632314695776586
GDELIILL	8	Unmodified	_GDELIILL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.26702880859375	2	443.268219	884.521884	0.90858	0.00040275	-3.7013	-0.0016407	-2.7927	-0.0012379	443.2665079712088	85.712	1.1011	85.712	85.372	86.474	0					75	25	4	0	0	0	1.0239	1	10780	10780		33.516	1.5607	1	1179100	+		18655	25715	13022	13048	21120	21120					0.07500437325779785
GDELIILL	8	Unmodified	_GDELIILL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2666015625	2	443.268219	884.521884	-0.72455	-0.00032117	-2.0142	-0.00089283	-2.7387	-0.001214	443.26723674965314	85.728	1.1392	85.752	85.367	86.506	0.023666					72	26	4	0	0	0	1.0239	1	10705	10705		33.516	5.6333	1	1182500	+		18656	25715	13022	13048	21121	21121					0.07500437325779785
GDENSDICARW	11	Unmodified	_GDENSDICARW_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.51318359375	3	422.512026	1264.51425	-0.52472	-0.0002217	2.2628	0.00095606	1.7381	0.00073435	422.5135125886904	32.05	1.6521	32.05	31.669	33.321	0					165	42	7	0	0	0	1.0592	1	2220	2220		22.562	0	1	32149000	+		18657	23494	13023	13049	21122	21122					-0.10742690004121869
GDEPRKVL	8	Unmodified	_GDEPRKVL_					0	0	0		nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA	nc|ENSG00000110721|P35790-2|CHKA	nc|ENSG00000110721|P35790-2|CHKA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.31341552734375	2	457.258717	912.50288	-0.68093	-0.00031136	1.1243	0.0005141	0.44338	0.00020274	457.2592769381034	44.084	0.29925	44.084	43.948	44.247	0					11	8	2	0	0	0	0.027866	1	4208	4208		38.806	13.356	1	114540			18658	3059	13024	13050	21123	21123					0.04312900754723614
GDFSNAHMI	9	Unmodified	_GDFSNAHMI_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;ENST00000487681.1_1_6:106992488-106999874:+|nuORF	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.75604248046875	2	496.218734	990.422915	-0.30758	-0.00015263	4.1512	0.0020599	3.8436	0.0019073	496.22070531021546	39.697	0.62928	39.473	39.225	39.854	-0.22311					26	15	2	0	0	0	0.024541	1	3335	3335		24.203	3.7209	1	161440			18659	3196	13025	13051	21124	21124					-0.07267908910785081
GDFSNAHMI	9	Unmodified	_GDFSNAHMI_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;ENST00000487681.1_1_6:106992488-106999874:+|nuORF	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.218734	990.422915	-0.95975	-0.00047625	7.5441	0.0037435	6.5844	0.0032673	496.2206838390954	39.554	0.20999	39.455	39.304	39.514	-0.098755	-0.018439	0.0032216	NaN	24.203	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40162			18660	3196	13025	13051							-0.07267908910785081
GDFSNAHMI	9	Unmodified	_GDFSNAHMI_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;ENST00000487681.1_1_6:106992488-106999874:+|nuORF	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.218734	990.422915	-0.47866	-0.00023752	4.3315	0.0021494	3.8528	0.0019119	496.2207703166023	39.591	0.69144	39.427	39.153	39.844	-0.16458	-0.046798	3.3282E-05	NaN	24.203	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253950			18661	3196	13025	13051							-0.07267908910785081
GDFSNAHMI	9	Unmodified	_GDFSNAHMI_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1;ENST00000487681.1_1_6:106992488-106999874:+|nuORF	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.218734	990.422915	-0.25641	-0.00012724	4.3457	0.0021564	4.0893	0.0020292	496.2207691954389	39.769	0.73107	39.539	39.237	39.968	-0.23021	0.065264	4.7352E-05	NaN	24.203	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194610			18662	3196	13025	13051							-0.07267908910785081
GDGDEHCSC	9	Unmodified	_GDGDEHCSC_					0	0	0			REV__ENST00000495294.1_1_X:2825314-2825683:-|nuORF	REV__ENST00000495294.1_1_X:2825314-2825683:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7586669921875	2	461.636917	921.259281	-0.097363	-4.4946E-05	-2.415	-0.0011148	-2.5123	-0.0011598	461.6359013986839	30.573	0.20574	30.647	30.502	30.708	0.074314					5	4	2	0	0	0	0.024541	1	1924	1924		30.504	10.022	1	17303	+		18663	19846	13026	13052	21125	21125					-0.20449874743997043
GDGEARLAR	9	Unmodified	_GDGEARLAR_					0	0	0			REV__ENSG00000184302|ENST00000327720|SIX6	REV__ENSG00000184302|ENST00000327720|SIX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7743835449219	2	472.749047	943.483542	0.024136	1.141E-05	-3.8119	-0.0018021	-3.7878	-0.0017907	472.7470077784849	36.702	0.55791	36.74	36.444	37.002	0.03804					46	14	4	0	0	0	0.024367	1	2917	2917		29.17	2.4771	1	1485300	+		18664	27654	13027	13053	21126	21126					0.009539444638107852
GDGERVSRSRE	11	Unmodified	_GDGERVSRSRE_					0	0	0		ENSG00000163956|ENST00000650182|LRPAP1;ENST00000296325.9_1_4:3514703-3533784:-|nuORF	ENSG00000163956|ENST00000650182|LRPAP1	ENSG00000163956|ENST00000650182|LRPAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.221435546875	3	416.541085	1246.60143	2.2468	0.00093586	1.1254	0.00046879	3.3722	0.0014047	416.54192625361475	24.2	0.30471	24.019	23.893	24.198	-0.18089					10	6	2	0	0	0	0.024726	1	1025	1025		25.892	4.1113	1	39729			18665	7179	13028	13054	21127	21127					-0.012011477382202429
GDGKERRRL	9	Unmodified	_GDGKERRRL_					0	0	0		ENST00000574357.1_1_17:7761820-7761880:+|nuORF	ENST00000574357.1_1_17:7761820-7761880:+|nuORF	ENST00000574357.1_1_17:7761820-7761880:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.8004150390625	2	543.809971	1085.60539	-0.75383	-0.00040994	2.849	0.0015493	2.0952	0.0011394	543.81144399349	45.318	0.68877	45.219	44.977	45.666	-0.099449					38	19	3	0	0	0	0.024447	1	4270	4270		25.574	0	1	1533500			18666	17082	13029	13055	21128	21128					0.06600986546163767
GDGKERRRL	9	Unmodified	_GDGKERRRL_					0	0	0		ENST00000574357.1_1_17:7761820-7761880:+|nuORF	ENST00000574357.1_1_17:7761820-7761880:+|nuORF	ENST00000574357.1_1_17:7761820-7761880:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.8009033203125	2	543.809971	1085.60539	-0.27634	-0.00015027	2.415	0.0013133	2.1386	0.001163	543.8111776495753	45.528	0.81185	45.276	44.826	45.638	-0.25252					34	22	2	0	0	0	0.024511	1	4293	4293		25.574	0	1	1725500			18667	17082	13029	13055	21129	21129					0.06600986546163767
GDGKMRGVLL	10	Unmodified	_GDGKMRGVLL_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2977905273438	2	523.294776	1044.575	-0.0068924	-3.6068E-06	1.6529	0.00086496	1.646	0.00086136	523.2944380769846	51.642	1.3975	51.523	51.082	52.48	-0.11875					88	36	4	0	0	0	0.59716	2	5352	5340;5352		77.318	6.6032	1	6381100			18668	2455	13030	13056	21130;21131	21131					0.05449491836770903
GDGKVLCIH	9	Unmodified	_GDGKVLCIH_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.28448486328125	2	471.247295	940.480036	-0.19893	-9.3745E-05	0.4244	0.0002	0.22547	0.00010625	471.24733599757496	43.316	0.76256	43.316	42.895	43.658	0					46	20	3	0	0	0	0.024487	1	4064	4064		24.203	0	1	1302400	+		18669	20413	13031	13057	21132	21132					0.0074155836557565635
GDGPRTLLVSI	11	Unmodified	_GDGPRTLLVSI_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3235473632812	2	564.324588	1126.63462	-0.96885	-0.00054675	-0.24477	-0.00013813	-1.2136	-0.00068488	564.324444620117	62.291	1.1884	62.052	61.675	62.863	-0.23917					75	33	5	0	0	0	0.53345	1	7222	7222		74.165	2.2875	1	20166000	+		18670	20251	13032	13058	21133	21133					0.07637086051818187
GDGPWQSNL	9	Unmodified	_GDGPWQSNL_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ATP11B-TFRC|1|fusion	ENSG00000058063|ENST00000323116|ATP11B;ATP11B-TFRC|1|fusion	ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79498291015625	2	487.222331	972.430109	-0.48256	-0.00023511	-0.3752	-0.00018281	-0.85776	-0.00041792	487.22394602386476	28.561	1.0708	28.642	27.91	28.981	0.080812					34	25	2	0	0	0	0.024457	1	1561	1561		29.15	4.9468	1	58862			18671	1209;149	13033	13059	21134	21134					-0.05720853038724272
GDGQERIE	8	Unmodified	_GDGQERIE_					0	0	0			REV__ENST00000560224.1_1_15:90408823-90446582:-|nuORF	REV__ENST00000560224.1_1_15:90408823-90446582:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2420349121094	2	452.211963	902.409374	-0.21314	-9.6386E-05	1.6037	0.0007252	1.3905	0.00062882	452.21369280107285	53.981	0.33606	53.784	53.619	53.955	-0.19739					18	10	2	0	0	0	0.027866	1	5703	5703		24.203	16.512	1	468250	+		18672	28977	13034	13060	21135	21135					-0.045734434183714257
GDGSWYRA	8	Unmodified	_GDGSWYRA_					0	0	0		nc|ENSG00000095627|Q9BXT4-4|TDRD1;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.26971435546875	2	456.203941	910.39333	0.12757	5.8197E-05	3.7935	0.0017306	3.9211	0.0017888	456.20551401336587	26.233	2.9446	26.315	24.413	27.357	0.081293					124	70	3	0	0	0	0.027866	1	1154	1154		38.806	9.6566	1	269460			18673	2033	13035	13061	21136	21136					-0.06545104864630957
GDHARPKKH	9	Unmodified	_GDHARPKKH_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2689208984375	2	523.286131	1044.55771	-1.6709	-0.00087434	-4.3273	-0.0022644	-5.9982	-0.0031388	523.2852154396537	38.301	0.27415	38.301	38.199	38.473	0					15	7	3	0	0	0	0.024506	1	3219	3219		30.504	8.5438	1	116040			18674	4076	13036	13062	21137	21137					0.037213323459809544
GDHELVIRG	9	Unmodified	_GDHELVIRG_					0	0	0		nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6	nc|ENSG00000198689|Q92581-3|SLC9A6	nc|ENSG00000198689|Q92581-3|SLC9A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7961120605469	2	498.267073	994.519593	0.85781	0.00042742	1.7599	0.00087692	2.6177	0.0013043	498.2671924703957	18.085	0.34339	17.929	17.805	18.148	-0.15637					9	6	2	0	0	0	0.024374	1	271	271		40.778	0	1	33077			18675	10170	13037	13063	21138	21138					0.022114016406590054
GDISFVVF	8	Unmodified	_GDISFVVF_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.231689453125	2	442.231636	882.448719	0.075978	3.36E-05	-0.20895	-9.2405E-05	-0.13297	-5.8806E-05	442.23146374260193	47.263	1.5678	46.994	46.695	48.263	-0.26939					103	42	4	0	0	0	1.0017	1	4618	4618		37.028	0	1	11562000	+		18676	20892	13038	13064	21139	21139					0.002793086031488201
GDIVMPGLL	9	Unmodified	_GDIVMPGLL_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2394104003906	2	457.754421	913.494289	-0.2835	-0.00012977	4.2751	0.001957	3.9916	0.0018272	457.75631119634494	32.895	1.3207	32.895	32.457	33.777	0					65	35	3	0	0	0	0.024357	1	2431	2431		26.796	6.3143	1	1130700			18677	6623;16491	13039	13065	21140	21140					0.034082107938843365
GDIVMPGLL	9	Unmodified	_GDIVMPGLL_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.754421	913.494289	0.31056	0.00014216	3.7328	0.0017087	4.0434	0.0018509	457.7560977091277	32.589	0.97025	32.652	32.315	33.286	0.062885	-0.12151	-0.0002895	NaN	26.796	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1065400			18678	6623;16491	13039	13065							0.034082107938843365
GDKKGGFSI	9	Unmodified	_GDKKGGFSI_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF;ENST00000484724.5_1_3:125872139-125877285:-|nuORF;ENST00000493803.5_1_3:125872139-125879775:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7457580566406	2	454.745442	907.476331	0.23503	0.00010688	-0.0051367	-2.3359E-06	0.22989	0.00010454	454.74535552957695	54.231	1.0027	54.084	53.711	54.714	-0.14723					74	28	4	0	0	0	0.34489	1	5891	5891		69.628	3.1983	1	2782700			18679	5782	13040	13066	21141	21141					0.018892118633857535
GDKNQKAS	8	Unmodified	_GDKNQKAS_					0	0	0		ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.218505859375	2	424.217049	846.419545	0.85808	0.00036401	2.6118	0.001108	3.4698	0.001472	424.21808049737785	98.51	2.2248	98.507	97.634	99.859	-0.0026703					125	51	4	0	0	0	1.0198	1	12538	12538		34.173	0	1	7197400			18680	8060	13041	13067	21142	21142					-0.009808356931443996
GDKQKLSPK	9	Unmodified	_GDKQKLSPK_					0	0	0			REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78851318359375	2	500.792924	999.571294	-0.33813	-0.00016933	-0.00092154	-4.615E-07	-0.33905	-0.00016979	500.7927452872822	32.254	0.58405	32.254	31.91	32.494	0					23	14	2	0	0	0	0.023274	1	2222	2222		67.494	19.534	1	949580	+		18681	26092	13042	13068	21143	21143					0.07149145334574314
GDKYWRVQS	9	Unmodified	_GDKYWRVQS_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7838134765625	2	569.78563	1137.55671	-0.051575	-2.9387E-05	-4.1617	-0.0023713	-4.2133	-0.0024007	569.7830876263695	24.926	0.56752	24.751	24.34	24.907	-0.17484					35	12	4	0	0	0	0.19099	1	1128	1128		90.37	12.106	1	785620	+		18682	22725	13043	13069	21144	21144					-0.0065692681357631955
GDKYWRVQS	9	Unmodified	_GDKYWRVQS_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	569.78563	1137.55671	-1.277	-0.00072761	-3.5464	-0.0020207	-4.8234	-0.0027483	569.7835439428638	24.822	0.64792	24.822	24.563	25.211	0	-0.030181	6.9876E-05	NaN	90.37	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1352400	+		18683	22725	13043	13069							-0.0065692681357631955
GDKYWRVQS	9	Unmodified	_GDKYWRVQS_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	569.78563	1137.55671	-1.2632	-0.00071973	-3.5289	-0.0020107	-4.7921	-0.0027305	569.7835210529511	24.872	0.73825	24.837	24.5	25.238	-0.034395	-0.014365	8.9793E-05	NaN	90.37	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1408800	+		18684	22725	13043	13069							-0.0065692681357631955
GDKYWRVQS	9	Unmodified	_GDKYWRVQS_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	569.78563	1137.55671	-0.43441	-0.00024752	-3.7003	-0.0021084	-4.1347	-0.0023559	569.7832199404802	25.223	0.48182	24.997	24.623	25.105	-0.22683	0.14487	-0.0001055	NaN	90.37	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	653340	+		18685	22725	13043	13069							-0.0065692681357631955
GDKYWRVQS	9	Unmodified	_GDKYWRVQS_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	569.78563	1137.55671	-0.051575	-2.9387E-05	-4.1617	-0.0023713	-4.2133	-0.0024007	569.7830876263695	24.926	0.56752	24.751	24.34	24.907	-0.17484	-0.10032	-0.00063126	NaN	90.37	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	785620	+		18686	22725	13043	13069							-0.0065692681357631955
GDLGEFYD	8	Unmodified	_GDLGEFYD_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.2641296386719	2	458.190165	914.365778	0.17195	7.8785E-05	0.36889	0.00016902	0.54084	0.00024781	458.190332066111	93.687	1.4062	93.564	93.278	94.685	-0.12215					75	32	5	0	0	0	0.027866	1	11640	11640		40.573	1.7665	1	1303500	+		18687	22133	13044	13070	21145	21145					-0.09483052915516055
GDLNPESPA	9	Unmodified	_GDLNPESPA_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1;nc|ENSG00000124782|Q92766-4|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2687072753906	2	450.208889	898.403226	-0.98201	-0.00044211	2.2693	0.0010217	1.2873	0.00057957	450.21006424699095	38.121	0.17597	38.121	38.071	38.247	0					9	5	3	0	0	0	0.024319	1	3185	3185		47.657	0	1	361110			18688	4074	13045	13071	21146	21146					-0.050039616499134354
GDMANNSV	8	Unmodified	_GDMANNSV_					0	0	0		nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;ENST00000549585.1_1_12:90035929-90049663:-|nuORF	nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000070961|P20020-5|ATP2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.17041015625	2	404.16871	806.322867	0.19936	8.0575E-05	2.1688	0.00087656	2.3682	0.00095714	404.17002060116556	76.215	1.2999	75.943	75.582	76.882	-0.27266					96	31	5	0	0	0	1.043	1	9064	9064		30.504	1.3541	1	5916600			18689	1442	13046	13072	21147	21147					-0.08804146244585809
GDNLRHADI	9	Unmodified	_GDNLRHADI_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7142333984375	2	505.75433	1009.49411	-0.53819	-0.00027219	-4.2262	-0.0021374	-4.7644	-0.0024096	505.7530857729878	31.335	0.48856	31.183	30.968	31.456	-0.15231					30	12	3	0	0	0	0.024374	1	2077	2077		25.574	8.8567	1	254120	+		18690	20569	13047	13073	21148	21148					-0.01026072881768414
GDPGTIFF	8	Unmodified	_GDPGTIFF_					0	0	0		ENSG00000155906|ENST00000444024|RMND1;nc|ENSG00000155906|Q9NWS8-2|RMND1	ENSG00000155906|ENST00000444024|RMND1	ENSG00000155906|ENST00000444024|RMND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.25390625	2	427.208161	852.401769	-0.16742	-7.1525E-05	0.16365	6.9912E-05	-0.0037769	-1.6135E-06	427.2083823567245	23.223	0.24191	23.299	23.234	23.476	0.076241					8	5	2	0	0	0	0.027866	1	868	868		26.796	7.4361	1	93309			18691	6499	13048	13074	21149	21149					-0.030335509479982647
GDPGVQGLPL	10	Unmodified	_GDPGVQGLPL_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7579040527344	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	1.1088	1	13239	13239		31.53	1.0262	1	4565500			18692	8885	13049	13075	21150	21150					0.024854810348642786
GDPIALPLLG	10	Unmodified	_GDPIALPLLG_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1;LMBRD1-COL19A1|1|fusion	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.26873779296875	2	483.286943	964.559333	0.29671	0.0001434	0.47737	0.00023071	0.77409	0.00037411	483.28672085267203	46.362	0.32952	46.266	46.039	46.368	-0.096649					14	8	2	0	0	0	0.03519	1	4438	4438		21.96	0	1	156440			18693	1731	13050	13076	21151	21151					0.07563528591390423
GDPLIAYIL	9	Unmodified	_GDPLIAYIL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7628479003906	2	487.781493	973.548434	0.086527	4.2206E-05	-3.7446	-0.0018266	-3.6581	-0.0017843	487.77870309938777	40.456	0.55264	40.456	40.212	40.764	0					21	15	2	0	0	0	0.024412	1	3586	3586		31.955	0	1	133410	+	+	18694	19526	13051	13077	21152	21152					0.06060126217084871
GDPVYVYYKL	10	Unmodified	_GDPVYVYYKL_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.8173217773438	2	608.816064	1215.61758	-0.59537	-0.00036247	1.7675	0.0010761	1.1722	0.00071363	608.8171045659574	99.725	1.2635	99.725	99.268	100.53	0					87	30	5	0	0	0	0.52982	1	12753	12753		84.916	2.6105	1	4514300			18695	6400	13052	13078	21153	21153					0.01839165445994695
GDPVYVYYKL	10	Unmodified	_GDPVYVYYKL_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8165283203125	2	608.816064	1215.61758	-0.21206	-0.00012911	1.5944	0.00097068	1.3823	0.00084157	608.8169655148004	99.671	1.2822	99.681	99.268	100.55	0.010231					75	31	5	0	0	0	0.50466	1	12695	12695		87.754	8.0417	1	4620800			18696	6400	13052	13078	21154	21154					0.01839165445994695
GDQGVLFHYGI	11	Unmodified	_GDQGVLFHYGI_					0	0	0			REV__ENSG00000159527|ENST00000683862|PGLYRP3	REV__ENSG00000159527|ENST00000683862|PGLYRP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5369567871094	3	402.536501	1204.58767	-0.5452	-0.00021946	0.37606	0.00015138	-0.16914	-6.8084E-05	402.5365975396167	32.657	1.0219	32.499	31.904	32.926	-0.15772					43	24	3	0	0	0	0.87596	1	2238	2238		53.089	6.6322	1	3691700	+		18697	25262	13053	13079	21155	21155					-0.006437734993596678
GDQSIGLLPP	10	Unmodified	_GDQSIGLLPP_					0	0	0			REV__nc|ENSG00000046889|Q70Z35-3|PREX2	REV__nc|ENSG00000046889|Q70Z35-3|PREX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.77154541015625	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	1.1329	1	13103	13103		27.882	1.1893	1	3882100	+		18698	34513	13054	13080	21156	21156					0.030817502063428037
GDQSYCILH	9	Carbamidomethyl (C)	_GDQSYC(Carbamidomethyl (C))ILH_	GDQSYC(1)ILH		GDQSYC(82)ILH		0	1	0			REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF	REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.327392578125	2	546.742573	1091.47059	-0.79019	-0.00043203	-4.4328	-0.0024236	-5.223	-0.0028556	546.7398898884028	41.643	0.97876	41.511	41.007	41.985	-0.13219					70	27	4	0	0	0	0.023454	1	3757	3757		82.241	37.863	1	5557800	+		18699	33766	13055	13081	21157	21157	444				-0.07148254710591573
GDQYWEEILL	10	Unmodified	_GDQYWEEILL_					0	0	0		ENSG00000088876|ENST00000278772|ZNF343;nc|ENSG00000088876|Q6P1L6-3|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5132141113281	3	422.539799	1264.59757	-0.11084	-4.6834E-05	-2.7608	-0.0011665	-2.8716	-0.0012134	422.53902062161814	31.637	0.39915	31.706	31.486	31.886	0.068962					19	9	3	0	0	0	0.03519	1	2098	2098		23.378	5.5448	1	131710			18700	1882	13056	13082	21158	21158					-0.024146302846247636
GDRLLLLM	8	Unmodified	_GDRLLLLM_					0	0	0		ENST00000597230.2_1_19:58789893-58790073:-|nuORF	ENST00000597230.2_1_19:58789893-58790073:-|nuORF	ENST00000597230.2_1_19:58789893-58790073:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.777587890625	2	465.775688	929.536823	0.37671	0.00017546	3.7484	0.0017459	4.1251	0.0019214	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.043	1	9741	9741		30.504	2.2494	1	1283800			18701	17444	13057	13083	21159	21159					0.06923605922122533
GDRLQGLSSL	10	Unmodified	_GDRLQGLSSL_					0	0	0		nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2841796875	2	523.285463	1044.55637	-1.3535	-0.00070829	0.60892	0.00031864	-0.74462	-0.00038965	523.2858564945441	37.783	0.8711	37.7	37.503	38.374	-0.082516					45	24	2	0	0	0	0.56936	1	3094	3094		80.455	5.4113	1	7742700			18702	7798	13058	13084	21160	21160					0.03587653466570373
GDRNIIRI	8	Unmodified	_GDRNIIRI_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.785888671875	2	478.785433	955.556313	-0.56814	-0.00027202	1.3661	0.00065407	0.79797	0.00038206	478.78604379053655	91.206	1.2204	91.206	90.804	92.024	0					59	28	4	0	0	0	1.0009	1	11562	11562		37.159	0	1	2453400			18703	9909	13059	13085	21161	21161					0.07675698257230579
GDRNIIRI	8	Unmodified	_GDRNIIRI_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7853698730469	2	478.785433	955.556313	-0.51861	-0.0002483	0.51423	0.0002462	-0.0043797	-2.097E-06	478.78559745514167	91.303	1.5076	91.18	90.914	92.422	-0.12341					73	35	4	0	0	0	0.93274	1	11213	11213		47.916	0	1	2419900			18704	9909	13059	13085	21162	21162					0.07675698257230579
GDSARTVSHI	10	Unmodified	_GDSARTVSHI_					0	0	0			REV__ENSG00000147854|ENST00000276893|UHRF2	REV__ENSG00000147854|ENST00000276893|UHRF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7652587890625	2	521.767437	1041.52032	0.23433	0.00012227	-3.9165	-0.0020435	-3.6821	-0.0019212	521.7652327012703	99.358	0.91754	99.354	98.9	99.817	-0.0038834					47	20	3	0	0	0	0.40114	1	12647	12647		98.582	9.5532	1	1160900	+		18705	24584	13060	13086	21163	21163					0.0012219628970342455
GDSQLGQPK	9	Unmodified	_GDSQLGQPK_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2870178222656	2	465.237981	928.461409	-0.16423	-7.6406E-05	2.244	0.001044	2.0798	0.00096758	465.2392478251085	75.569	0.43353	75.296	75.227	75.661	-0.27266					20	10	3	0	0	0	0.023454	1	8929	8929		62.107	0	1	280330			18706	10351	13061	13087	21164	21164					-0.005682800045974545
GDVVHGVESL	10	Unmodified	_GDVVHGVESL_					0	0	0		nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3	nc|ENSG00000142082|Q9NTG7-2|SIRT3	nc|ENSG00000142082|Q9NTG7-2|SIRT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.2585144042969	2	506.258914	1010.50327	0.20313	0.00010283	-0.32964	-0.00016688	-0.12651	-6.4049E-05	506.25864577211405	41.18	1.1088	41.057	40.725	41.834	-0.12317					77	30	3	0	0	0	0.71272	1	3659	3659		66.429	0.96389	1	2555100			18707	5534	13062	13088	21165	21165					-0.0015572431608461557
GDWGGAGDAPL	11	Unmodified	_GDWGGAGDAPL_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2;nc|ENSG00000063176|Q9NRA0-4|SPHK2;nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8338623046875	2	508.227613	1014.44067	-1.0459	-0.00053158	1.3038	0.00066265	0.25789	0.00013107	508.22823158704335	105.5	2.0776	105.36	104.34	106.42	-0.13099					98	74	2	0	0	0	0.024785	1	13086	13086		45.972	18.09	1	248620			18708	18057	13063	13089	21166	21166					-0.06596870384282738
GDWGGAGDAPL	11	Unmodified	_GDWGGAGDAPL_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2;nc|ENSG00000063176|Q9NRA0-4|SPHK2;nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.228271484375	2	508.227613	1014.44067	0.3812	0.00019374	1.3942	0.00070855	1.7754	0.00090229	508.22743412680103	106.09	3.2101	105.93	104.09	107.3	-0.16132					198	123	3	0	0	0	0.98904	1	13185	13185		39.253	3.6345	1	202260			18709	18057	13063	13089	21167	21167					-0.06596870384282738
GEAALHYTIP	10	Unmodified	_GEAALHYTIP_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.8154296875	2	536.277106	1070.53966	-0.006248	-3.3507E-06	1.8248	0.0009786	1.8185	0.00097524	536.278401230117	71.467	0.73679	71.261	70.921	71.658	-0.20613					23	17	2	0	0	0	0.03519	1	8373	8373		19.997	12.306	1	253020	+		18710	26001	13064	13090	21168	21168					0.007211525806042118
GEAEPEGPQ	9	Unmodified	_GEAEPEGPQ_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2893981933594	2	457.198522	912.38249	0.4558	0.00020839	-0.62651	-0.00028644	-0.1707	-7.8045E-05	457.1984459846606	93.92	0.44366	93.92	93.645	94.088	0					13	10	3	0	0	0	0.024506	1	11900	11900		10.866	0	1	68540	+		18711	26892	13065	13091	21169	21169					-0.07720552029559258
GEAGGGGG	8	Unmodified	_GEAGGGGG_					0	0	0		ENSG00000253293|ENST00000283921|HOXA10	ENSG00000253293|ENST00000283921|HOXA10	ENSG00000253293|ENST00000283921|HOXA10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.7947387695312	1	561.22633	560.219054	0.5899	0.00033107	2.6648	0.0014955	3.2547	0.0018266	561.2277323334625	70.86	0.81298	70.86	70.526	71.339	0					30	19	2	0	0	0	0.027866	1	8626	8626		9.4706	0	1	751680			18712	10860	13066	13092	21170	21170					-0.07864685289939644
GEALMVKGF	9	Unmodified	_GEALMVKGF_					0	0	0			REV__PRKCG|p.R370G|1|0.53|ENSG00000126583|chr19:53898455-53898455|C/G|missense_variant	REV__PRKCG|p.R370G|1|0.53|ENSG00000126583|chr19:53898455-53898455|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.28662109375	2	476.252046	950.489538	0.72748	0.00034646	-0.15684	-7.4694E-05	0.57064	0.00027177	476.24859363803137	101.77	1.3435	101.64	101.36	102.71	-0.13156					54	31	3	0	0	0	0.024405	1	12665	12665		35.618	0	1	90594	+		18713	37405	13067	13093	21171	21171					0.012313266511227994
GEARRRATQ	9	Unmodified	_GEARRRATQ_					0	0	0		ENST00000442452.1_1_7:100490234-100491508:-|nuORF;nc|ENSG00000087085|P22303-3|ACHE;nc|ENSG00000087085|P22303-4|ACHE;ENSG00000087085|ENST00000241069|ACHE;nc|ENSG00000087085|P22303-2|ACHE	ENST00000442452.1_1_7:100490234-100491508:-|nuORF	ENST00000442452.1_1_7:100490234-100491508:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2691040039062	2	522.786496	1043.55844	-0.076861	-4.0182E-05	-0.22804	-0.00011922	-0.3049	-0.0001594	522.7879171074278	42.12	0.64293	41.89	41.688	42.331	-0.2303					34	17	3	0	0	0	0.024511	1	3721	3721		19.104	0	1	401680			18714	1833	13068	13094	21172	21172					0.03840126995032733
GEARSDASH	9	Unmodified	_GEARSDASH_					0	0	0			REV__nc|ENSG00000111554|Q8TC05-4|MDM1	REV__nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7643737792969	2	465.207212	928.399872	1.1974	0.00055703	-2.7757	-0.0012913	-1.5783	-0.00073424	465.206134873731	33.277	0.25139	33.333	33.21	33.461	0.056572					9	6	2	0	0	0	0.024	1	2339	2339		21.96	0	1	109880	+		18715	21924	13069	13095	21173	21173					-0.06719211703898509
GECRFLGLL	9	Unmodified	_GECRFLGLL_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.27294921875	2	504.27077	1006.52699	-0.20194	-0.00010183	-2.5439	-0.0012828	-2.7459	-0.0013847	504.2694624433981	65.39	0.82211	65.39	65.091	65.913	0					64	22	4	0	0	0	0.33245	1	7752	7752		71.296	1.6681	1	11605000	+		18716	23052	13070	13096	21174	21174					0.02398417916742801
GEDTFNVNF	9	Unmodified	_GEDTFNVNF_					0	0	0			REV__ENSG00000198799|ENST00000361127|LRIG2	REV__ENSG00000198799|ENST00000361127|LRIG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7688598632812	2	521.727446	1041.44034	-1.0203	-0.00053233	-2.0109	-0.0010492	-3.0313	-0.0015815	521.7263775683354	55.749	0.61387	55.847	55.523	56.137	0.098015					21	16	2	0	0	0	0.024205	1	6053	6053		20.947	0	1	233640	+		18717	28483	13071	13097	21175	21175					-0.07872290104137392
GEEAEDIDFIK	11	Unmodified	_GEEAEDIDFIK_					0	0	0			REV__ENSG00000125977|ENST00000374980|EIF2S2	REV__ENSG00000125977|ENST00000374980|EIF2S2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.84674072265625	3	422.534714	1264.58231	-0.41749	-0.0001764	2.921	0.0012342	2.5035	0.0010578	422.5350902915019	33.161	1.1603	32.996	32.395	33.555	-0.16565					62	28	4	0	0	0	0.024739	1	2337	2337		22.562	0	1	253530	+		18718	22869	13072	13098	21176	21176					-0.03939541872478003
GEEEEEEETDA	11	Unmodified	_GEEEEEEETDA_					0	0	0			REV__ENSG00000167670|ENST00000301280|CHAF1A	REV__ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.7295532226562	2	633.728234	1265.44192	-1.8953	-0.0012011	3.4441	0.0021827	1.5489	0.00098156	633.7304617294425	29.234	1.1541	28.989	28.665	29.819	-0.24524					72	26	4	0	0	0	0.69247	1	1774	1774		64.207	0.901	1	2492700	+		18719	26174	13073	13099	21177	21177					-0.18018790387350236
GEEEEPFASE	10	Unmodified	_GEEEEPFASE_					0	0	0			REV__ENST00000494189.1_1_2:182968515-182982019:+|nuORF	REV__ENST00000494189.1_1_2:182968515-182982019:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7825317382812	2	562.224933	1122.43531	-0.69071	-0.00038833	1.0186	0.0005727	0.32793	0.00018437	562.2253074032393	64.545	0.58317	64.289	64.038	64.621	-0.25563					22	14	2	0	0	0	0.03519	1	7362	7362		15.642	0	1	475880	+		18720	24732	13074	13100	21178	21178					-0.12100638757419802
GEEENIFSK	9	Unmodified	_GEEENIFSK_					0	0	0		nc|ENSG00000152270|Q13370-2|PDE3B;ENSG00000152270|ENST00000282096|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.2716674804688	2	526.748379	1051.4822	-0.10612	-5.5901E-05	0.22941	0.00012084	0.12328	6.4939E-05	526.7480382335434	47.612	0.51396	47.343	47.087	47.601	-0.26939					21	13	2	0	0	0	0.024405	1	4620	4620		20.947	0	1	335500			18721	6264	13075	13101	21179	21179					-0.0414773441559646
GEEGFFFFIDL	11	Unmodified	_GEEGFFFFIDL_					0	0	0			REV__ENST00000358127.8_1_9:36833483-36833678:-|nuORF	REV__ENST00000358127.8_1_9:36833483-36833678:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.2198486328125	3	440.876411	1319.6074	-0.27095	-0.00011946	-1.8345	-0.00080879	-2.1055	-0.00092825	440.8754715335087	26.233	0.77818	26.21	25.998	26.776	-0.023088					29	18	2	0	0	0	0.024723	1	1329	1329		35.178	6.6015	1	133990	+		18722	30849	13076	13102	21180	21180					-0.03961442279228322
GEEGGVLFPL	10	Unmodified	_GEEGGVLFPL_					0	0	0			REV__ENSG00000188786|ENST00000373036|MTF1	REV__ENSG00000188786|ENST00000373036|MTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.32611083984375	2	509.266207	1016.51786	-0.13092	-6.6671E-05	0.25302	0.00012885	0.1221	6.2183E-05	509.2662753610712	77.953	0.89102	77.691	77.399	78.29	-0.26202					45	20	3	0	0	0	0.03519	1	9297	9297		49.442	0	1	433330	+		18723	28065	13077	13103	21181	21181					0.010263478320553077
GEEGRYKQKF	10	Unmodified	_GEEGRYKQKF_					0	0	0		C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.5596618652344	3	414.547288	1240.62004	-0.62348	-0.00025846	1.4301	0.00059283	0.80659	0.00033437	414.54796388046515	26.379	0.67	26.216	26.038	26.708	-0.16331					26	17	2	0	0	0	0.03519	1	1354	1354		54.722	0	1	197980			18724	196	13078	13104	21182	21182					0.009350139036541805
GEEKGELDEEE	11	Unmodified	_GEEKGELDEEE_					0	0	0			REV__ENSG00000187994|ENST00000591812|RINL	REV__ENSG00000187994|ENST00000591812|RINL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.84649658203125	3	421.845617	1262.51502	-0.095223	-4.0169E-05	1.484	0.00062603	1.3888	0.00058586	421.8464834301196	33.233	2.4226	33.002	32.586	35.009	-0.23107					163	60	4	0	0	0	1.0123	1	2374	2374		34.087	2.4522	1	12688000	+		18725	27998	13079	13105	21183	21183					-0.10573616874057734
GEELLQDLI	9	Unmodified	_GEELLQDLI_					0	0	0		ENST00000478337.1_1_22:41980283-41980484:-|nuORF;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000478337.1_1_22:41980283-41980484:-|nuORF	ENST00000478337.1_1_22:41980283-41980484:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3038940429688	2	515.276772	1028.53899	-1.4956	-0.00077067	3.7913	0.0019536	2.2957	0.0011829	515.2790848886208	30.115	0.89202	30.115	29.408	30.3	0					26	21	2	0	0	0	0.024313	1	1867	1867		69.628	18.292	1	205290			18726	2199	13080	13106	21184	21184					0.02586313140909624
GEENAASEDRW	11	Unmodified	_GEENAASEDRW_					0	0	0		ANGEL1|p.F561Cfs*50|1|0.38|ENSG00000013523|chr14:76791308-76791309|-/GGCT|frameshift_variant;ENSG00000013523|ENST00000251089|ANGEL1	ANGEL1|p.F561Cfs*50|1|0.38|ENSG00000013523|chr14:76791308-76791309|-/GGCT|frameshift_variant	ANGEL1|p.F561Cfs*50|1|0.38|ENSG00000013523|chr14:76791308-76791309|-/GGCT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.8466796875	3	421.846063	1262.51636	-0.45655	-0.00019259	0.41253	0.00017403	-0.044018	-1.8569E-05	421.84659378502005	33.136	2.2943	32.971	32.638	34.932	-0.16565					178	57	7	0	0	0	1.0123	1	2350	2350		34.087	7.3368	1	13050000			18727	86	13081	13107	21185	21185					-0.1043993799466989
GEENTPHM	8	Unmodified	_GEENTPHM_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.76611328125	2	457.687267	913.359981	-0.70564	-0.00032296	1.47	0.00067282	0.7644	0.00034986	457.6878469405999	44.137	0.47814	44.137	43.836	44.314	0					19	13	2	0	0	0	0.027866	1	4159	4159		29.15	21.956	1	213970	+		18728	24415	13082	13108	21186	21186					-0.10016474698818456
GEEREEGHE	9	Unmodified	_GEEREEGHE_					0	0	0			REV__ENST00000452320.3_2_7:79089488-79089590:+|nuORF	REV__ENST00000452320.3_2_7:79089488-79089590:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2695922851562	2	536.220517	1070.42648	-1.6123	-0.00086455	3.7716	0.0020224	2.1593	0.0011579	536.2221096385388	29.02	0.75056	29.02	28.82	29.57	0					23	18	2	0	0	0	0.024261	1	1821	1821		64.207	0	1	177340	+		18729	32735	13083	13109	21187	21187					-0.10591567603205476
GEERRLKTV	9	Unmodified	_GEERRLKTV_					0	0	0		ENST00000518942.1_1_8:52812001-52812160:+|nuORF	ENST00000518942.1_1_8:52812001-52812160:+|nuORF	ENST00000518942.1_1_8:52812001-52812160:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2821655273438	2	544.314554	1086.61456	0.34821	0.00018954	2.3601	0.0012846	2.7083	0.0014742	544.3151448467876	59.499	0.78078	59.321	58.994	59.775	-0.17847					42	19	3	0	0	0	0.024427	1	6643	6643		19.997	0	1	560290			18730	15940	13084	13110	21188	21188					0.07471335111858934
GEERRLKTV	9	Unmodified	_GEERRLKTV_					0	0	0		ENST00000518942.1_1_8:52812001-52812160:+|nuORF	ENST00000518942.1_1_8:52812001-52812160:+|nuORF	ENST00000518942.1_1_8:52812001-52812160:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.314554	1086.61456	0.48245	0.0002626	2.4226	0.0013187	2.9051	0.0015813	544.3151889606143	59.508	0.71462	59.311	59.05	59.765	-0.19742	0.0023223	-8.0725E-05	NaN	32.812	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596200			18731	15940	13084	13110							0.07471335111858934
GEERRLKTV	9	Unmodified	_GEERRLKTV_					0	0	0		ENST00000518942.1_1_8:52812001-52812160:+|nuORF	ENST00000518942.1_1_8:52812001-52812160:+|nuORF	ENST00000518942.1_1_8:52812001-52812160:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.314554	1086.61456	-0.36112	-0.00019656	2.7762	0.0015111	2.4151	0.0013146	544.3152736681054	59.542	0.7122	59.294	59.05	59.762	-0.24841	-0.014421	0.00030421	NaN	32.812	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635930			18732	15940	13084	13110							0.07471335111858934
GEFHISNNN	9	Unmodified	_GEFHISNNN_					0	0	0			REV__ENSG00000171502|ENST00000370571|COL24A1	REV__ENSG00000171502|ENST00000370571|COL24A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2979125976562	2	516.230687	1030.44682	-0.77092	-0.00039797	-2.7921	-0.0014413	-3.563	-0.0018393	516.2292210890893	61.924	0.89185	61.746	61.412	62.304	-0.17782					66	22	4	0	0	0	0.024288	1	7016	7016		44.377	1.9027	1	5777400	+		18733	26575	13085	13111	21189	21189					-0.06718352152756779
GEFLLISAA	9	Unmodified	_GEFLLISAA_					0	0	0			REV__ENSG00000171861|ENST00000304478|MRM3	REV__ENSG00000171861|ENST00000304478|MRM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2480773925781	2	460.758018	919.501483	0.44041	0.00020292	2.9384	0.0013539	3.3788	0.0015568	460.7593064395741	70.749	0.65012	70.76	70.55	71.2	0.010735					26	15	2	0	0	0	0.024457	1	8538	8538		15.642	2.6826	1	179030	+		18734	26610	13086	13112	21190	21190					0.038512666659471506
GEFRPSAGP	9	Unmodified	_GEFRPSAGP_					0	0	0			REV__ENST00000257836.3_1_11:32851563-32852059:+|nuORF	REV__ENST00000257836.3_1_11:32851563-32852059:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.9214782714844	2	459.227417	916.44028	-0.2029	-9.3177E-05	-3.8176	-0.0017532	-4.0205	-0.0018463	459.22547072127315	24.3	0.94491	24.125	23.743	24.688	-0.17484					52	21	3	0	0	0	0.024447	1	1096	1096		40.778	12.896	1	693750	+		18735	29569	13087	13113	21191	21191					-0.021282453134745083
GEFTDSEIM	9	Unmodified	_GEFTDSEIM_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8147583007812	2	514.71569	1027.41683	-0.9142	-0.00047055	0.94809	0.00048799	0.033888	1.7443E-05	514.7161778290255	44.987	0.45089	44.838	44.593	45.044	-0.1488					20	12	2	0	0	0	0.024436	1	4289	4289		38.806	1.647	1	170850			18736	7228	13088	13114	21192	21192					-0.09578471932991306
GEFTQKPGF	9	Unmodified	_GEFTQKPGF_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.71417236328125	2	505.750724	1009.4869	-0.46399	-0.00023466	4.1884	0.0021183	3.7244	0.0018836	505.7528744062124	31.304	0.53465	31.119	30.865	31.4	-0.18503					22	13	2	0	0	0	0.024397	1	2100	2100		47.657	20.964	1	304160			18737	1576	13089	13115	21193	21193					-0.017468054821847545
GEGAAEPAVRQ	11	Unmodified	_GEGAAEPAVRQ_					0	0	0		ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7388305664062	2	542.772719	1083.53089	-0.23575	-0.00012796	4.0843	0.0022168	3.8485	0.0020889	542.7748457589441	58.347	0.55931	58.157	57.978	58.537	-0.19018					24	13	2	0	0	0	0.024755	1	6440	6440		66.962	10.241	1	1213000			18738	13043	13090	13116	21194	21194					-0.007538210558550418
GEGAAEPAVRQ	11	Unmodified	_GEGAAEPAVRQ_					0	0	0		ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.772719	1083.53089	-0.33366	-0.0001811	4.2348	0.0022985	3.9011	0.0021174	542.7748528455264	58.445	0.85471	58.264	57.971	58.826	-0.18071	0.029114	0.00019164	NaN	66.962	33	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1353600			18739	13043	13090	13116							-0.007538210558550418
GEGAAEPAVRQ	11	Unmodified	_GEGAAEPAVRQ_					0	0	0		ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	ENST00000372486.5_1_9:132397750-132398029:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.772719	1083.53089	-0.14773	-8.0182E-05	3.9165	0.0021257	3.7687	0.0020456	542.7747380507876	58.526	0.50045	58.284	58.001	58.502	-0.24166	0.048956	-0.00015389	NaN	66.962	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1209700			18740	13043	13090	13116							-0.007538210558550418
GEGAESMMGFF	11	Unmodified	_GEGAESMMGFF_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1;ENST00000465617.1_1_10:12123569-12136179:+|nuORF	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.324462890625	2	581.730817	1161.44708	-0.97329	-0.00056619	-2.3291	-0.0013549	-3.3024	-0.0019211	581.7291208373889	40.217	0.34898	40.217	40.099	40.448	0					13	9	2	0	0	0	0.024738	1	3539	3539		19.997	0	1	77267			18741	9027	13091	13117	21195	21195					-0.12718436539421418
GEGAILTRR	9	Unmodified	_GEGAILTRR_					0	0	0		ENST00000426965.1_1_2:177001672-177001759:-|nuORF	ENST00000426965.1_1_2:177001672-177001759:-|nuORF	ENST00000426965.1_1_2:177001672-177001759:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7849426269531	2	486.78289	971.551228	-0.20217	-9.8412E-05	2.7247	0.0013263	2.5225	0.0012279	486.78418384241957	100.88	2.281	100.89	100.39	102.67	0.0090332					143	53	5	0	0	0	0.84115	1	13043	13043		36.447	0.82846	1	16375000			18742	14098	13092	13118	21196	21196					0.06431394394610379
GEGAPKTLST	10	Unmodified	_GEGAPKTLST_					0	0	0		FNDC3A|p.T975A|1|0.19|ENSG00000102531|chr13:49198510-49198510|A/G|missense_variant	FNDC3A|p.T975A|1|0.19|ENSG00000102531|chr13:49198510-49198510|A/G|missense_variant	FNDC3A|p.T975A|1|0.19|ENSG00000102531|chr13:49198510-49198510|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2763671875	2	480.753464	959.492375	-1.133	-0.0005447	0.87142	0.00041894	-0.26159	-0.00012576	480.7537603537925	48.374	0.61802	48.098	47.851	48.469	-0.27598					34	16	3	0	0	0	0.03519	1	4817	4817		32.751	9.708	1	1375200			18743	17655	13093	13119	21197	21197					0.011008733096218748
GEGARGGPSR	10	Unmodified	_GEGARGGPSR_					0	0	0			REV__ENST00000589123.5_2_19:3464828-3465026:+|nuORF	REV__ENST00000589123.5_2_19:3464828-3465026:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77447509765625	2	472.238847	942.463141	-0.3442	-0.00016255	-2.2259	-0.0010512	-2.5701	-0.0012137	472.2369581941027	36.307	0.9323	36.264	36.067	36.999	-0.042458					32	24	3	0	0	0	0.03519	1	2945	2945		22.58	0	1	72563	+		18744	35667	13094	13120	21198	21198					-0.010392261959850657
GEGDRLKL	8	Unmodified	_GEGDRLKL_					0	0	0		ENST00000552176.2_17:6916002-6916251:+|nuORF	ENST00000552176.2_17:6916002-6916251:+|nuORF	ENST00000552176.2_17:6916002-6916251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.7267761230469	2	444.250892	886.48723	-0.7096	-0.00031524	-3.4385	-0.0015275	-4.1481	-0.0018428	444.25097309849775	38.862	0.37373	38.639	38.415	38.789	-0.22311					15	9	2	0	0	0	0.027866	1	3227	3227		18.324	14.339	1	90584			18745	16619	13095	13121	21199	21199					0.03944614237661881
GEGEGEGREV	10	Unmodified	_GEGEGEGREV_					0	0	0			REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|76|3|anti-sense	REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|76|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8183898925781	2	509.725435	1017.43632	-0.30187	-0.00015387	-1.3402	-0.00068315	-1.6421	-0.00083702	509.72458285590665	74.958	0.47875	74.968	74.732	75.211	0.010376					21	11	3	0	0	0	0.03519	1	9117	9117		44.377	0	1	204600	+		18746	37614	13096	13122	21200	21200					-0.07170379597835108
GEGGLGSLLSL	11	Unmodified	_GEGGLGSLLSL_					0	0	0			REV__ENST00000583582.5_1_17:37809763-37814496:+|nuORF	REV__ENST00000583582.5_1_17:37809763-37814496:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8027038574219	2	501.776939	1001.53933	-0.29345	-0.00014724	1.6555	0.00083071	1.3621	0.00068347	501.77538471911924	57.315	0.34076	57.411	57.088	57.429	0.095306					12	8	2	0	0	0	0.02479	1	6342	6342		60.118	17.254	1	88982	+		18747	35552	13097	13123	21201	21201					0.03861732860787015
GEGGRFVV	8	Unmodified	_GEGGRFVV_					0	0	0			REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.7185363769531	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	1.0574	1	12117	12117		20.482	1.1219	1	3611200	+		18748	21577	13098	13124	21202	21202					0.00696673520440072
GEGHVRTFDG	10	Unmodified	_GEGHVRTFDG_					0	0	0		ENSG00000205592|ENST00000454784|MUC19;nc|ENSG00000205592|Q7Z5P9-2|MUC19	ENSG00000205592|ENST00000454784|MUC19	ENSG00000205592|ENST00000454784|MUC19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2667846679688	2	537.751787	1073.48902	-0.39841	-0.00021425	3.4309	0.001845	3.0325	0.0016307	537.7534246191572	32.66	0.53064	32.424	32.216	32.746	-0.23666					20	12	2	0	0	0	0.03519	1	2246	2246		14.137	0	1	175170			18749	10435	13099	13125	21203	21203					-0.04478376744373236
GEGHVRTFDG	10	Unmodified	_GEGHVRTFDG_					0	0	0		ENSG00000205592|ENST00000454784|MUC19;nc|ENSG00000205592|Q7Z5P9-2|MUC19	ENSG00000205592|ENST00000454784|MUC19	ENSG00000205592|ENST00000454784|MUC19	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.751787	1073.48902	-0.96365	-0.0005182	3.6885	0.0019835	2.7249	0.0014653	537.7537588623359	32.594	0.48267	32.436	32.204	32.687	-0.15772	-0.04607	0.00043131	NaN	17.468	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276860			18750	10435	13099	13125							-0.04478376744373236
GEGIASFSW	9	Unmodified	_GEGIASFSW_					0	0	0			REV__ENST00000377710.9_1_20:17971363-17971543:+|nuORF	REV__ENST00000377710.9_1_20:17971363-17971543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7768859863281	2	477.2218	952.429047	-0.060814	-2.9022E-05	-0.24339	-0.00011615	-0.30421	-0.00014517	477.22158341841833	26.66	1.8948	26.637	26.243	28.138	-0.023088					63	48	2	0	0	0	0.023181	1	1553	1553		34.173	0	1	115110	+		18751	31383	13100	13126	21204	21204					-0.04907067407611976
GEGILTQLGL	10	Unmodified	_GEGILTQLGL_					0	0	0			REV__ENST00000586321.1_1_17:76311829-76340155:+|nuORF	REV__ENST00000586321.1_1_17:76311829-76340155:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.31475830078125	2	500.787307	999.560061	-0.29037	-0.00014541	0.52282	0.00026182	0.23245	0.00011641	500.78739405057587	60.578	0.83704	60.373	60.091	60.928	-0.20599					38	20	3	0	0	0	0.03519	1	6731	6731		65.465	10.689	1	2039400	+		18752	35595	13101	13127	21205	21205					0.060263232404167866
GEGKLIFC	8	Unmodified	_GEGKLIFC_					0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.25518798828125	2	433.725664	865.436775	0.056934	2.4694E-05	-0.38098	-0.00016524	-0.32404	-0.00014055	433.7264221427247	102.9	0.58958	102.77	102.54	103.13	-0.12783					17	13	3	0	0	0	0.027866	1	12773	12773		42.474	0	1	519530			18753	3972	13102	13128	21206	21206					-0.0013263141170227755
GEGLLTLRAK	10	Unmodified	_GEGLLTLRAK_					0	0	0		nc|ENSG00000131037|Q8TE68-3|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENSG00000131037|ENST00000201647|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF	nc|ENSG00000131037|Q8TE68-3|EPS8L1	nc|ENSG00000131037|Q8TE68-3|EPS8L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.325927734375	2	529.321848	1056.62914	-0.2134	-0.00011296	-2.8365	-0.0015014	-3.0499	-0.0016144	529.3203840286097	72.037	0.11289	72.037	71.978	72.091	0					4	2	2	0	0	0	0.03519	1	8753	8753		9.1829	0	1	931350			18754	4487	13103	13129	21207	21207					0.10309407259978798
GEGLNTKWV	9	Unmodified	_GEGLNTKWV_					0	0	0			REV__TRAPPC13|p.R288Gfs*30|1|0.47|ENSG00000113597|chr5:65660860-65660860|A/-|frameshift_variant	REV__TRAPPC13|p.R288Gfs*30|1|0.47|ENSG00000113597|chr5:65660860-65660860|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7557678222656	2	502.263999	1002.51345	-0.18259	-9.1708E-05	0.27728	0.00013927	0.094689	4.7559E-05	502.2639251315694	47.6	0.65355	47.502	47.238	47.892	-0.097553					23	17	2	0	0	0	0.024418	1	4652	4652		54.776	10.245	1	634860	+		18755	37728	13104	13130	21208	21208					0.012288834091350509
GEGLREASL	9	Unmodified	_GEGLREASL_					0	0	0			REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7840270996094	2	466.245806	930.47706	0.61723	0.00028778	0.0043582	2.032E-06	0.62159	0.00028981	466.24554056997005	46.306	0.82578	46.357	45.932	46.758	0.051395					35	23	2	0	0	0	0.024487	1	4548	4548		11.511	0	1	442700	+		18756	32199	13105	13131	21209	21209					0.009040065124395369
GEGLREASL	9	Unmodified	_GEGLREASL_					0	0	0			REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	REV__ENST00000422252.1_1_22:42478055-42479288:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.245806	930.47706	-0.74276	-0.00034631	-0.016819	-7.842E-06	-0.75958	-0.00035415	466.2457663194461	46.514	0.35293	46.318	46.126	46.479	-0.19526	-0.055841	-4.8208E-05	NaN	14.137	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155280	+		18757	32199	13105	13131							0.009040065124395369
GEGLVLSGLG	10	Unmodified	_GEGLVLSGLG_					0	0	0			REV__ENST00000370110.5_1_10:103541168-103541297:-|nuORF	REV__ENST00000370110.5_1_10:103541168-103541297:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7608642578125	2	451.2531	900.491647	-0.56296	-0.00025404	2.849	0.0012856	2.286	0.0010316	451.2539727512125	22.606	0.31837	22.421	22.236	22.554	-0.18539					9	6	2	0	0	0	0.03519	1	786	786		15.642	1.8665	1	20395	+		18758	31111	13106	13132	21210	21210					0.03742078660582138
GEGPARPPL	9	Unmodified	_GEGPARPPL_					0	0	0		ENST00000366714.2_1_1:228337560-228345460:+|nuORF	ENST00000366714.2_1_1:228337560-228345460:+|nuORF	ENST00000366714.2_1_1:228337560-228345460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2353210449219	2	447.245609	892.476666	0.46959	0.00021002	-0.30505	-0.00013643	0.16454	7.3588E-05	447.24536503257366	37.108	0.8405	37.044	36.749	37.589	-0.063389					36	22	2	0	0	0	0.024436	1	3073	3073		38.806	16.846	1	753550			18759	12825	13107	13133	21211	21211					0.026126315832470937
GEGPGAELPLF	11	Unmodified	_GEGPGAELPLF_					0	0	0		ENSG00000090530|ENST00000319332|P3H2	ENSG00000090530|ENST00000319332|P3H2	ENSG00000090530|ENST00000319332|P3H2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3187255859375	2	543.776939	1085.53933	0.4186	0.00022763	-0.55288	-0.00030064	-0.13428	-7.3017E-05	543.7782646323166	59.412	0.59	59.412	58.93	59.52	0					21	15	2	0	0	0	0.024771	1	6716	6716		42.864	7.246	1	284580			18760	1934	13108	13134	21212	21212					-2.2671392343909247E-05
GEGPQLCGAR	10	Unmodified	_GEGPQLCGAR_					0	0	0			REV__ENST00000427177.5_1_17:75496090-75496291:+|nuORF	REV__ENST00000427177.5_1_17:75496090-75496291:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.80535888671875	2	494.237458	986.460364	-0.60034	-0.00029671	0.044371	2.193E-05	-0.55597	-0.00027478	494.23698988237726	39.508	0.80132	39.344	39.116	39.918	-0.16459					24	20	2	0	0	0	0.03519	1	3350	3350		10.265	0.5596	1	202320	+		18761	32288	13109	13135	21213	21213					-0.033408176451757754
GEGQFDAGS	9	Unmodified	_GEGQFDAGS_					0	0	0			REV__ENST00000331920.10_1_9:98268819-98270479:-|nuORF	REV__ENST00000331920.10_1_9:98268819-98270479:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2485656738281	2	434.177589	866.340626	0.77334	0.00033577	3.3161	0.0014398	4.0894	0.0017755	434.17900299689404	33.077	0.89006	33.134	32.61	33.5	0.056568					42	23	2	0	0	0	0.024374	1	2270	2270		25.574	9.9322	1	109480	+		18762	30485	13110	13136	21214	21214					-0.09789107718086143
GEGQNGGELL	10	Unmodified	_GEGQNGGELL_					0	0	0			REV__nc|ENSG00000100034|P49593-2|PPM1F	REV__nc|ENSG00000100034|P49593-2|PPM1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.23040771484375	2	487.232896	972.451239	-0.3814	-0.00018583	0.95078	0.00046325	0.56938	0.00027742	487.2335949321102	31.139	0.51011	31.151	30.871	31.382	0.011797					13	11	2	0	0	0	0.03519	1	2055	2055		35.152	8.4591	1	30697	+		18763	21038	13111	13137	21215	21215					-0.03608887729842536
GEGQNGGELL	10	Unmodified	_GEGQNGGELL_					0	0	0			REV__nc|ENSG00000100034|P49593-2|PPM1F	REV__nc|ENSG00000100034|P49593-2|PPM1F	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.232896	972.451239	-0.86724	-0.00042255	-0.023601	-1.1499E-05	-0.89085	-0.00043405	487.23289496633606	31.267	0.29661	31.267	31.047	31.343	0	0.057729	-0.00033688	NaN	32.751	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43052	+		18764	21038	13111	13137							-0.03608887729842536
GEGRAQSVN	9	Unmodified	_GEGRAQSVN_					0	0	0			REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF	REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.76397705078125	2	459.225405	916.436257	0.2887	0.00013258	-0.095714	-4.3954E-05	0.19299	8.8625E-05	459.2252936523905	23.579	1.985	23.378	21.85	23.835	-0.20193					87	43	3	0	0	0	0.021513	1	976	976		93.195	21.9	1	775500	+		18765	35407	13112	13138	21216	21216					-0.025303348071929577
GEGREAARA	9	Unmodified	_GEGREAARA_					0	0	0		ENST00000599069.5_1_1:16939872-16940031:-|nuORF	ENST00000599069.5_1_1:16939872-16940031:-|nuORF	ENST00000599069.5_1_1:16939872-16940031:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.7640380859375	2	458.733397	915.452242	1.865	0.00085553	-0.023385	-1.0727E-05	1.8416	0.0008448	458.73298000247485	23.52	0.85243	23.328	22.897	23.749	-0.19117					26	19	2	0	0	0	0.024319	1	893	893		56.721	23.205	1	132220			18766	17484	13113	13139	21217	21217					-0.008866285702993082
GEGRFRQTS	9	Unmodified	_GEGRFRQTS_					0	0	0			REV__ENST00000429694.1_1:144593815-144598517:+|nuORF	REV__ENST00000429694.1_1:144593815-144598517:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7573852539062	2	519.259779	1036.50501	0.14026	7.2832E-05	1.1422	0.0005931	1.2825	0.00066593	519.2602997377954	59.866	0.98458	59.618	58.888	59.873	-0.24842					56	24	4	0	0	0	0.024541	1	6632	6632		17.468	0.10304	1	1500500	+		18767	32341	13114	13140	21218	21218					-0.011786705074882775
GEGRMKESITR	11	Unmodified	_GEGRMKESITR_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8461608886719	3	421.887316	1262.64012	-0.011382	-4.8021E-06	0.86207	0.0003637	0.85068	0.00035889	422.22282686198514	33.753	0.44158	33.527	33.277	33.719	-0.22643					22	9	3	0	0	0	0.024723	1	2399	2399		14.779	0	1	145120			18768	4299	13115	13141	21219	21219					0.019304415719489043
GEGRTARLL	9	Unmodified	_GEGRTARLL_					0	0	0		nc|ENSG00000290894|Q96TA0|PCDHB18P	nc|ENSG00000290894|Q96TA0|PCDHB18P	nc|ENSG00000290894|Q96TA0|PCDHB18P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.77777099609375	2	486.78289	971.551228	-1.0366	-0.00050459	1.3403	0.00065242	0.30369	0.00014783	486.78295599643474	24.251	1.0093	24.204	23.614	24.623	-0.047148					37	22	3	0	0	0	0.024412	1	1076	1076		31.955	2.8053	1	90840			18769	18832	13116	13142	21220	21220					0.06431394394610379
GEGRVSLNL	9	Unmodified	_GEGRVSLNL_					0	0	0			REV__ENST00000462114.1_1_X:112068356-112068440:-|nuORF	REV__ENST00000462114.1_1_X:112068356-112068440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.77191162109375	2	472.761623	943.508694	-0.36698	-0.00017349	2.9147	0.001378	2.5477	0.0012045	472.7617217688679	40.139	0.14828	40.162	40.088	40.237	0.023006					5	3	2	0	0	0	0.024405	1	3460	3460		20.947	3.582	1	140100	+		18770	32893	13117	13143	21221	21221					0.03467999266365496
GEGSDRREV	9	Unmodified	_GEGSDRREV_					0	0	0			REV__ENST00000496961.5_1_1:110039559-110039661:+|nuORF	REV__ENST00000496961.5_1_1:110039559-110039661:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2939147949219	2	502.741419	1003.46829	0.046314	2.3284E-05	3.7551	0.0018879	3.8014	0.0019111	502.7432016282154	54.279	0.54647	54.081	53.857	54.404	-0.19739					26	14	3	0	0	0	0.024405	1	5707	5707		20.947	3.582	1	464370	+		18771	33840	13118	13144	21222	21222					-0.03330967124043127
GEGSERWST	9	Unmodified	_GEGSERWST_					0	0	0			REV__ENST00000372728.3_1_X:102318137-102318646:-|nuORF	REV__ENST00000372728.3_1_X:102318137-102318646:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7507629394531	2	504.722695	1007.43084	-0.78377	-0.00039559	4.1732	0.0021063	3.3894	0.0017107	504.7245798949145	35.543	3.7888	35.543	33.554	37.343	0					207	100	3	0	0	0	0.024405	1	2473	2473		27.882	4.3595	1	949700	+		18772	31213	13119	13145	21223	21223					-0.07258058389652433
GEGSYLHMESN	11	Unmodified	_GEGSYLHMESN_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.18304443359375	3	408.50476	1222.49245	-0.19242	-7.8603E-05	-4.4444	-0.0018156	-4.6368	-0.0018942	408.5029997499166	25.192	0.52291	24.965	24.708	25.231	-0.22683					15	11	2	0	0	0	0.02475	1	1168	1168		36.528	0	1	43345			18773	18361	13120	13146	21224	21224					-0.10989494752675455
GEGTLSVKVP	10	Unmodified	_GEGTLSVKVP_					0	0	0		ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2975769042969	2	493.779482	985.544411	-0.68314	-0.00033732	-0.17539	-8.6604E-05	-0.85852	-0.00042392	493.7796214808029	84.49	1.1325	84.417	83.874	85.007	-0.072769					76	26	4	0	0	0	0.03519	1	10589	10589		30.318	0	1	385610			18774	6781	13121	13147	21225	21225					0.05106036723384477
GEGTRRRAAE	10	Unmodified	_GEGTRRRAAE_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;ENST00000576462.1_1_16:67991639-68002357:-|nuORF;ENST00000572010.5_1_16:67986261-67997363:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7830810546875	2	551.789235	1101.56392	-0.31429	-0.00017342	-2.7777	-0.0015327	-3.092	-0.0017061	551.787605502238	41.497	1.0784	41.269	40.729	41.807	-0.2278					44	27	2	0	0	0	0.03519	1	3659	3659		31.53	13.205	1	1525300			18775	17066	13122	13148	21226	21226					0.017198057868426986
GEGTSKKL	8	Unmodified	_GEGTSKKL_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA;ENST00000466165.1_1_2:179312230-179315757:-|nuORF;ENST00000470200.5_1_2:179312233-179316155:-|nuORF;ENST00000460433.5_1_2:179312233-179315416:-|nuORF	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.8791809082031	2	410.232168	818.449782	-0.34259	-0.00014054	1.7475	0.00071686	1.4049	0.00057632	410.23276057226366	31.752	1.4817	31.594	30.881	32.363	-0.15772					55	36	2	0	0	0	0.027866	1	2109	2109		33.516	12.569	1	97611			18776	8965	13123	13149	21227	21227					0.0332952297205793
GEGVINAAK	9	Unmodified	_GEGVINAAK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.87042236328125	2	429.737617	857.460681	0.047446	2.0389E-05	4.3978	0.0018899	4.4453	0.0019103	429.7395074800409	36.807	0.40232	36.59	36.326	36.729	-0.21661					13	9	2	0	0	0	0.024294	1	2895	2895		29.15	12.676	1	117860	+		18777	25017	13124	13150	21228	21228					0.026249253463333844
GEGVPGPWPL	10	Unmodified	_GEGVPGPWPL_					0	0	0		ENST00000566519.1_1_16:28738032-28738629:+|nuORF	ENST00000566519.1_1_16:28738032-28738629:+|nuORF	ENST00000566519.1_1_16:28738032-28738629:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3054504394531	2	504.761092	1007.50763	-0.22034	-0.00011122	4.3988	0.0022203	4.1784	0.0021091	504.76292229426247	69.44	0.57847	69.44	69.131	69.71	0					24	14	3	0	0	0	0.03519	1	8366	8366		53.351	3.9099	1	236670			18778	16944	13125	13151	21229	21229					0.004177848974677545
GEGVPVASH	9	Unmodified	_GEGVPVASH_					0	0	0			REV__ENST00000513319.5_1_5:121402440-121412860:-|nuORF	REV__ENST00000513319.5_1_5:121402440-121412860:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.7491455078125	2	426.714142	851.413731	0.0095221	4.0632E-06	0.40745	0.00017387	0.41698	0.00017793	426.7141833143266	26.256	1.0098	26.088	25.584	26.594	-0.16816					53	27	3	0	0	0	0.024294	1	1282	1282		15.642	0	1	507530	+		18779	34151	13126	13152	21230	21230					-0.01791934204811696
GEGVVGLCHW	10	Unmodified	_GEGVVGLCHW_					0	0	0		ENST00000589123.5_2_19:3464828-3465026:+|nuORF	ENST00000589123.5_2_19:3464828-3465026:+|nuORF	ENST00000589123.5_2_19:3464828-3465026:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.74853515625	2	528.750201	1055.48585	0.46157	0.00024405	-4.0387	-0.0021354	-3.5771	-0.0018914	528.7478381280127	84.986	3.1781	84.827	84.02	87.198	-0.15869					155	74	4	0	0	0	0.9856	1	10267	10267		47.916	3.3845	1	2044000			18780	17301	13127	13153	21231	21231					-0.03967343122735656
GEGWAFLT	8	Unmodified	_GEGWAFLT_					0	0	0		ENST00000487162.1_1_22:50967153-50967951:-|nuORF	ENST00000487162.1_1_22:50967153-50967951:-|nuORF	ENST00000487162.1_1_22:50967153-50967951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.7661437988281	2	440.713611	879.412668	0.29153	0.00012848	2.5857	0.0011395	2.8772	0.001268	440.7166267441592	37.251	0.31187	37.042	36.961	37.273	-0.2092					10	7	2	0	0	0	0.027866	1	2951	2951		12.959	0	1	59115			18781	15360	13128	13154	21232	21232					-0.031861485737067596
GEGWFGQV	8	Unmodified	_GEGWFGQV_					0	0	0		ENST00000353214.6_1_9:127639469-127639550:+|nuORF	ENST00000353214.6_1_9:127639469-127639550:+|nuORF	ENST00000353214.6_1_9:127639469-127639550:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.7661437988281	2	440.20341	878.392267	1.4361	0.00063219	1.9988	0.00087986	3.4349	0.0015121	440.2040839618337	36.755	1.0311	36.546	36.161	37.192	-0.2092					45	25	2	0	0	0	0.027866	1	2951	2951		11.511	3.2797	1	202230			18782	12611	13129	13155	21233	21233					-0.05179319233513979
GEHLFPEHPLE	11	Unmodified	_GEHLFPEHPLE_					0	0	0		ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.5474853515625	3	435.547177	1303.6197	0.2384	0.00010383	-0.35448	-0.00015439	-0.11609	-5.0561E-05	435.5469377988633	29.486	1.5572	29.337	28.956	30.513	-0.14952					100	36	4	0	0	0	0.96926	1	1783	1783		43.651	2.5707	1	1865500			18783	4450	13130	13156	21234	21234					-0.019964058161804132
GEHLLTLIY	9	Unmodified	_GEHLLTLIY_					0	0	0			REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7791137695312	2	529.797675	1057.5808	-0.17126	-9.0731E-05	-4.0594	-0.0021506	-4.2306	-0.0022414	529.7954506485513	63.353	0.97155	63.13	62.816	63.787	-0.22267					54	24	3	0	0	0	0.024205	1	7220	7220		73.975	29.858	1	1288600	+		18784	28071	13131	13157	21235	21235					0.054309136201027286
GEHPEGDPGE	10	Unmodified	_GEHPEGDPGE_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2534790039062	2	512.204335	1022.39412	-0.10105	-5.1756E-05	2.8899	0.0014802	2.7888	0.0014285	512.7050623921384	54.469	0.2057	54.224	54.166	54.372	-0.2453					9	5	3	0	0	0	0.03519	1	5787	5787		44.377	16.495	1	123140			18785	5215	13132	13158	21236	21236					-0.11618355006214642
GEHSVRQRN	9	Unmodified	_GEHSVRQRN_					0	0	0		ENST00000265626.8_3_20:56227391-56286474:-|nuORF;ENST00000341744.7_2_20:56227391-56284786:-|nuORF	ENST00000265626.8_3_20:56227391-56286474:-|nuORF	ENST00000265626.8_3_20:56227391-56286474:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7974853515625	2	541.776128	1081.5377	-0.45051	-0.00024407	-0.27174	-0.00014722	-0.72224	-0.0003913	541.7758037667343	77.595	0.82275	77.595	77.339	78.162	0					47	19	4	0	0	0	0.024539	1	9552	9552		14.865	0	1	1111000			18786	11598	13133	13159	21237	21237					0.00019536615400284063
GEHTCWCFW	9	Unmodified	_GEHTCWCFW_					0	0	0		ENST00000559729.5_1_15:85212968-85213184:-|nuORF	ENST00000559729.5_1_15:85212968-85213184:-|nuORF	ENST00000559729.5_1_15:85212968-85213184:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	584.3169555664062	2	584.720587	1167.42662	-1.3935	-0.00081483	-1.8064	-0.0010562	-3.2	-0.0018711	584.7193129134764	22.31	0.4713	22.235	22.035	22.506	-0.075296					16	9	2	0	0	0	0.024541	1	747	747		26.796	1.3459	1	39700			18787	16786	13134	13160	21238	21238					-0.15039562408560414
GEILGKGEDGV	11	Unmodified	_GEILGKGEDGV_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.2782592773438	2	537.277303	1072.54005	-0.64344	-0.00034571	3.1467	0.0016906	2.5033	0.0013449	537.2788359831001	24.913	0.52416	24.686	24.451	24.975	-0.22683					27	11	3	0	0	0	1.0017	1	1153	1153		36.447	3.6343	1	910880	+		18788	24589	13135	13161	21239	21239					0.006685275098107013
GEIPYKDVD	9	Unmodified	_GEIPYKDVD_					0	0	0		nc|ENSG00000073803|O43283-4|MAP3K13;nc|ENSG00000073803|O43283-5|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13;ENST00000547020.1_1_12:53878838-53879309:-|nuORF;ENST00000433092.5_1_3:185155245-185169222:+|nuORF;MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12	nc|ENSG00000073803|O43283-4|MAP3K13;MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	nc|ENSG00000073803|O43283-4|MAP3K13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.257080078125	2	518.253297	1034.49204	-0.60271	-0.00031235	-2.7402	-0.0014201	-3.3429	-0.0017325	518.252541381792	81.913	0.42767	81.771	81.527	81.954	-0.14201					18	9	3	0	0	0	0.024344	1	9843	9843		45.972	0	1	62171			18789	18079;5349	13136	13162	21240	21240					-0.023825464102401384
GEIQVQRT	8	Unmodified	_GEIQVQRT_					0	0	0			REV__ENSG00000128045|ENST00000248706|RASL11B	REV__ENSG00000128045|ENST00000248706|RASL11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.76416015625	2	465.753798	929.493044	-0.57569	-0.00026813	-0.33566	-0.00015633	-0.91135	-0.00042446	465.75355992269505	33.23	0.76023	33.237	32.85	33.61	0.0066223					58	20	4	0	0	0	0.027866	1	2401	2401		38.806	4.6336	1	2382200	+		18790	22964	13137	13163	21241	21241					0.025477127493331864
GEIQVQRT	8	Unmodified	_GEIQVQRT_					0	0	0			REV__ENSG00000128045|ENST00000248706|RASL11B	REV__ENSG00000128045|ENST00000248706|RASL11B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.753798	929.493044	-0.14235	-6.6298E-05	-1.6266	-0.0007576	-1.769	-0.0008239	465.7534836569037	33.327	0.23397	33.127	32.937	33.171	-0.20019	-0.14561	-0.0008986	NaN	38.806	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34629	+		18791	22964	13137	13163							0.025477127493331864
GEISDTKL	8	Unmodified	_GEISDTKL_					0	0	0		PARN|p.E590K|1|0.39|ENSG00000140694|chr16:14446984-14446984|C/T|missense_variant	PARN|p.E590K|1|0.39|ENSG00000140694|chr16:14446984-14446984|C/T|missense_variant	PARN|p.E590K|1|0.39|ENSG00000140694|chr16:14446984-14446984|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	431.72979736328125	2	431.729458	861.444362	0.3255	0.00014053	-0.6122	-0.0002643	-0.2867	-0.00012377	431.72907738223216	39.145	0.79566	38.92	38.6	39.395	-0.2257					42	21	3	0	0	0	0.5947	1	3283	3283		76.774	0	1	1646700			18792	18942	13138	13164	21242	21242					0.008097993895603395
GEISLLAVGG	10	Unmodified	_GEISLLAVGG_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1;chr16:57897543-57897796|437|35.54|0.93|5.26|-|1|CNGB1,CNGB1|1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.8057556152344	2	458.260925	914.507297	0.33904	0.00015537	1.4928	0.00068411	1.8319	0.00083948	458.26084406304653	69.604	1.1323	69.604	68.861	69.993	0					52	28	3	0	0	0	0.03519	1	8342	8342		49.442	5.3247	1	1222500			18793	1432	13139	13165	21243	21243					0.046623651776371844
GEKIWAGLW	9	Unmodified	_GEKIWAGLW_					0	0	0			REV__nc|ENSG00000254402|Q50LG9|LRRC24	REV__nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2825317382812	2	530.284734	1058.55492	-0.85756	-0.00045475	-3.0613	-0.0016234	-3.9188	-0.0020781	530.2830288664173	55.995	1.0846	55.839	55.211	56.295	-0.15655					60	28	3	0	0	0	0.42604	2	6060	6048;6060		64.207	5.4253	1	3206700	+		18794	37171	13140	13166	21244;21245	21245					0.027980641684507646
GEKIWAGLW	9	Unmodified	_GEKIWAGLW_					0	0	0			REV__nc|ENSG00000254402|Q50LG9|LRRC24	REV__nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2794799804688	2	530.284734	1058.55492	-0.34753	-0.00018429	-3.826	-0.0020289	-4.1735	-0.0022132	530.2827740379463	56.088	0.94342	55.872	55.447	56.39	-0.21607					59	24	4	0	0	0	0.67687	1	6046	6046		47.657	2.6351	1	3151100	+		18795	37171	13140	13166	21246	21246					0.027980641684507646
GEKKWVTV	8	Unmodified	_GEKKWVTV_					0	0	0		ENST00000464288.5_1_7:72954286-72971546:-|nuORF;ENST00000493592.1_1_7:72954140-72971423:-|nuORF;ENST00000463858.5_1_7:72951630-72971540:-|nuORF;ENST00000482231.5_1_7:72951630-72971576:-|nuORF	ENST00000464288.5_1_7:72954286-72971546:-|nuORF	ENST00000464288.5_1_7:72954286-72971546:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7694091796875	2	473.77146	945.528367	-0.1849	-8.7603E-05	-4.2887	-0.0020319	-4.4736	-0.0021195	473.76931038711996	29.99	1.2242	29.746	29.358	30.582	-0.24415					74	28	5	0	0	0	0.34573	1	1865	1865		104.75	0.68976	1	4221600			18796	14745	13141	13167	21247	21247					0.05342375277143674
GEKLKKLTD	9	Unmodified	_GEKLKKLTD_					0	0	0		ENST00000445715.5_1_Y:21755293-21766003:+|nuORF;ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF;ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2507934570312	2	516.308406	1030.60226	0.02194	1.1328E-05	-0.89839	-0.00046384	-0.87645	-0.00045252	516.3078360003257	46.761	0.79912	46.492	46.074	46.874	-0.26939					53	21	3	0	0	0	0.0245	1	4531	4531		22.58	0	1	1043900			18797	14444;17386	13142	13168	21248	21248					0.08818298648793643
GEKLSIPVPF	10	Unmodified	_GEKLSIPVPF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2803344726562	2	543.813325	1085.6121	-1.0508	-0.00057142	-0.13565	-7.377E-05	-1.1864	-0.00064519	543.8130857733245	61.715	0.92472	61.537	61.078	62.003	-0.17781					53	22	3	0	0	0	0.03519	1	6910	6910		39.253	0	1	1100300			18798	6479	13143	13169	21249	21249					0.07271486654190085
GEKRDGAEEE	10	Unmodified	_GEKRDGAEEE_					0	0	0			REV__ENSG00000146373|ENST00000521654|RNF217	REV__ENSG00000146373|ENST00000521654|RNF217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3233032226562	2	560.249274	1118.484	0.23304	0.00013056	-3.9824	-0.0022311	-3.7493	-0.0021006	560.7489461481873	67.773	0.18663	67.773	67.644	67.831	0					5	4	2	0	0	0	0.03519	1	8086	8086		51.193	15.574	1	57025	+		18799	24480	13144	13170	21250	21250					-0.07050725397652968
GEKRWPHF	8	Unmodified	_GEKRWPHF_					0	0	0			REV__ENST00000473429.5_1_1:110584363-110592127:+|nuORF	REV__ENST00000473429.5_1_1:110584363-110592127:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8234252929688	2	528.772326	1055.5301	-0.91271	-0.00048262	-0.48479	-0.00025634	-1.3975	-0.00073896	529.2739832002585	61.685	0.78553	61.685	61.295	62.08	0					24	18	2	0	0	0	0.027866	1	7109	7109		6.7355	0	1	971690	+		18800	33236	13145	13171	21251	21251					0.004554290857413434
GEKRWTKTIV	10	Unmodified	_GEKRWTKTIV_					0	0	0			REV__ENSG00000164933|ENST00000297578|SLC25A32	REV__ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8878479003906	3	406.571545	1216.69281	0.33985	0.00013817	-0.55013	-0.00022367	-0.21028	-8.5493E-05	406.5714351139813	34.101	0.47232	33.877	33.561	34.033	-0.22412					26	11	3	0	0	0	0.03519	1	2443	2443		20.03	14.029	1	157340	+		18801	25819	13146	13172	21252	21252					0.09312767697065283
GEKSARSQSH	10	Unmodified	_GEKSARSQSH_					0	0	0			REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__ENSG00000090615|ENST00000450791|GOLGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8353881835938	2	543.767968	1085.52138	-1.2502	-0.00067981	1.7483	0.00095066	0.4981	0.00027085	543.7684627335772	51.826	0.50949	51.678	51.371	51.881	-0.14735					19	14	2	0	0	0	0.03519	1	5500	5500		31.634	9.6744	1	132300	+		18802	20881	13147	13173	21253	21253					-0.017955893413954982
GEKTYRKL	8	Unmodified	_GEKTYRKL_					0	0	0			REV__ENST00000514009.1_1_5:43207484-43207592:+|nuORF	REV__ENST00000514009.1_1_5:43207484-43207592:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.76397705078125	2	497.787641	993.56073	-0.36514	-0.00018176	-0.6469	-0.00032202	-1.012	-0.00050378	497.78722459177874	42.635	0.61136	42.403	42.194	42.806	-0.23186					22	15	2	0	0	0	0.027866	1	3845	3845		24.203	0	1	232660	+		18803	34162	13148	13174	21254	21254					0.06369162680130103
GELAMEHRQ	9	Unmodified	_GELAMEHRQ_					0	0	0		ENSG00000164291|ENST00000380009|ARSK	ENSG00000164291|ENST00000380009|ARSK	ENSG00000164291|ENST00000380009|ARSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.26904296875	2	535.756015	1069.49748	-0.71269	-0.00038183	3.1706	0.0016987	2.4579	0.0013168	535.7574907575453	76.248	0.72273	76.248	75.956	76.678	0					35	17	3	0	0	0	0.024427	1	9373	9373		26.693	0	1	526250			18804	7251	13149	13175	21255	21255					-0.03449146099410427
GELARNVL	8	Unmodified	_GELARNVL_					0	0	0		LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|39|1|anti-sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|39|1|anti-sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|39|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.25311279296875	2	436.253434	870.492316	0.71914	0.00031373	-0.99134	-0.00043247	-0.27219	-0.00011875	436.25287112209537	50.409	1.5894	50.229	49.788	51.378	-0.18071					78	41	4	0	0	0	0.47665	1	5135	5135		87.754	0	1	9562200			18805	17937	13150	13176	21256	21256					0.051889181002820806
GELCWKKVN	9	Unmodified	_GELCWKKVN_					0	0	0		FBXO30|p.D371N|1|0.41|ENSG00000118496|chr6:145805295-145805295|C/T|missense_variant	FBXO30|p.D371N|1|0.41|ENSG00000118496|chr6:145805295-145805295|C/T|missense_variant	FBXO30|p.D371N|1|0.41|ENSG00000118496|chr6:145805295-145805295|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2484741210938	2	538.781502	1075.54845	-1.4619	-0.00078766	1.2522	0.00067466	-0.20973	-0.000113	539.2841182947551	55.862	0.28235	55.96	55.819	56.101	0.097893					11	7	2	0	0	0	0.024374	1	6109	6109		32.812	2.9709	1	162330			18806	17645	13151	13177	21257	21257					0.013698029454417338
GELFIELF	8	Unmodified	_GELFIELF_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.2586364746094	2	484.260394	966.506234	-0.64457	-0.00031214	-3.5012	-0.0016955	-4.1458	-0.0020076	484.25841979100005	27.377	0.59838	27.209	26.971	27.57	-0.16816					38	13	4	0	0	0	0.96719	1	1493	1493		42.474	1.6963	1	2568100	+		18807	22500	13152	13178	21258	21258					0.021641508086986505
GELGRLVNRNL	11	Unmodified	_GELGRLVNRNL_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2296142578125	3	414.242199	1239.70477	0.49347	0.00020442	3.4125	0.0014136	3.9059	0.001618	414.24367598610456	27.144	0.62814	27.144	26.658	27.286	0					22	15	2	0	0	0	0.024762	1	1455	1455		11.455	0	1	68372			18808	1103	13153	13179	21259	21259					0.09450384440265225
GELIFLHTK	9	Unmodified	_GELIFLHTK_					0	0	0			REV__ENSG00000114656|ENST00000645291|CFAP92	REV__ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2833862304688	2	529.305667	1056.59678	-0.94599	-0.00050072	-1.16	-0.000614	-2.106	-0.0011147	529.8073397706693	48.19	0.50491	48.037	47.858	48.363	-0.15301					29	14	3	0	0	0	0.024477	1	4919	4919		27.882	0	1	675080	+		18809	22135	13154	13180	21260	21260					0.07074619856962272
GELILEDKQA	10	Unmodified	_GELILEDKQA_					0	0	0			REV__ENST00000475906.1_1_14:35732014-35732239:+|nuORF	REV__ENST00000475906.1_1_14:35732014-35732239:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.302490234375	2	558.300778	1114.587	1.453	0.00081123	3.0022	0.0016761	4.4552	0.0024873	558.302339799416	16.935	0.3015	16.781	16.656	16.957	-0.15376					10	5	3	0	0	0	1.1307	1	126	126		26.693	3.6504	1	60609	+		18810	25616	13155	13181	21261	21261					0.034293870609417354
GELKRLDL	8	Unmodified	_GELKRLDL_					0	0	0		nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-3|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	472.282192	942.549831	0.19762	9.333E-05	-0.039101	-1.8467E-05	0.15851	7.4864E-05	472.28202300535213	50.526	0.97771	50.607	50.243	51.221	0.080994					53	27	2	0	0	0	0.027866	1	5177	5177		38.806	6.8513	1	2829200			18811	954	13156	13182	21262	21262					0.0762576030585933
GELKRLDL	8	Unmodified	_GELKRLDL_					0	0	0		nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-3|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.282192	942.549831	0.2221	0.00010489	-0.42575	-0.00020107	-0.20365	-9.618E-05	472.2818453953756	50.809	0.62605	50.629	50.282	50.908	-0.18071	0.001863	-0.00015002	NaN	38.806	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2942700			18812	954	13156	13182							0.0762576030585933
GELNARTL	8	Unmodified	_GELNARTL_					0	0	0			REV__ENST00000449714.1_1_2:150444067-150444316:+|nuORF	REV__ENST00000449714.1_1_2:150444067-150444316:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2734375	2	437.243067	872.47158	0.064487	2.8196E-05	-1.0054	-0.00043959	-0.94088	-0.00041139	437.24286787371386	42.617	0.30353	42.391	42.143	42.447	-0.22597					10	7	2	0	0	0	0.027866	1	3835	3835		104.75	8.5561	1	68950	+		18813	32684	13157	13183	21263	21263					0.03024327720618203
GELPAKVSL	9	Unmodified	_GELPAKVSL_					0	0	0			REV__ENST00000557173.1_1_12:95228580-95228931:+|nuORF	REV__ENST00000557173.1_1_12:95228580-95228931:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.313232421875	2	457.271293	912.528032	-0.89669	-0.00041003	0.69531	0.00031794	-0.20138	-9.2087E-05	457.2712067831356	44.84	0.64052	44.691	44.19	44.83	-0.1488					38	18	3	0	0	0	0.022484	1	4263	4263		71.296	12.514	1	1780900	+		18814	35060	13158	13184	21264	21264					0.06826955557278325
GELPNLTFSL	10	Unmodified	_GELPNLTFSL_					0	0	0			REV__ENST00000465832.5_1_7:117008647-117066986:-|nuORF	REV__ENST00000465832.5_1_7:117008647-117066986:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.27490234375	2	545.792589	1089.57063	-0.34816	-0.00019002	-3.8891	-0.0021226	-4.2372	-0.0023126	545.7925597620842	77.698	0.37943	77.487	77.165	77.545	-0.21087					10	8	2	0	0	0	0.03519	1	9573	9573		87.696	0	1	115680	+		18815	24958	13159	13185	21265	21265					0.02942305894839592
GELPSTVESL	10	Unmodified	_GELPSTVESL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2666625976562	2	516.266404	1030.51826	-0.93702	-0.00048375	1.496	0.00077235	0.55901	0.0002886	516.2671589437393	31.404	2.1801	31.404	30.426	32.606	0					119	53	4	0	0	0	0.85955	1	2061	2061		56.721	7.2795	1	6792100			18816	4972	13160	13186	21266	21266					0.004217227612343777
GELPSTVESL	10	Unmodified	_GELPSTVESL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2669677734375	2	516.266404	1030.51826	-0.36468	-0.00018827	1.0262	0.00052982	0.66156	0.00034154	516.2669071432356	31.336	1.8481	31.348	30.334	32.182	0.011799					139	44	5	0	0	0	0.96965	1	2033	2033		49.442	3.4693	1	6582100			18817	4972	13160	13186	21267	21267					0.004217227612343777
GELRGRLAR	9	Unmodified	_GELRGRLAR_					0	0	0		nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B;ENST00000463837.5_1_11:64118923-64120763:+|nuORF;ENST00000479965.5_1_11:64120415-64123189:+|nuORF;nc|ENSG00000168071|A6NC98-5|CCDC88B	nc|ENSG00000168071|A6NC98-4|CCDC88B	nc|ENSG00000168071|A6NC98-4|CCDC88B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8218383789062	2	514.309606	1026.60466	-1.0566	-0.00054342	0.003474	1.7867E-06	-1.0531	-0.00054164	514.308797794936	56.104	0.86738	56.202	55.819	56.686	0.097893					41	23	3	0	0	0	0.024427	1	6217	6217		34.173	1.3601	1	1086600			18818	7783	13161	13187	21268	21268					0.0924219189712403
GELSSDLLLA	10	Unmodified	_GELSSDLLLA_					0	0	0			REV__nc|ENSG00000143514|Q13625-2|TP53BP2	REV__nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.3263244628906	2	509.276772	1016.53899	-0.46318	-0.00023589	-4.2626	-0.0021709	-4.7258	-0.0024067	509.7752825094227	77.769	0.6695	77.785	77.32	77.989	0.015907					35	15	4	0	0	0	0.03519	1	9534	9534		56.721	16.148	1	340980	+		18819	24257	13162	13188	21269	21269					0.03138313140914306
GELVKFEHA	9	Unmodified	_GELVKFEHA_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2674560546875	2	515.271824	1028.5291	-0.71227	-0.00036701	-1.3873	-0.00071483	-2.0996	-0.0010818	515.2707717550882	31.09	0.20662	31.159	31.082	31.288	0.068962					7	4	2	0	0	0	0.024477	1	2015	2015		44.117	19.914	1	63363	+		18820	27536	13163	13189	21270	21270					0.01597169926208153
GELVKFEHA	9	Unmodified	_GELVKFEHA_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.271824	1028.5291	-0.058053	-2.9913E-05	2.7895	0.0014374	2.7315	0.0014075	515.2734469984722	31.899	0.55282	31.663	31.489	32.042	-0.23666	0.23343	0.0014977	NaN	26.693	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137660	+		18821	27536	13163	13189							0.01597169926208153
GELWSKPVL	9	Unmodified	_GELWSKPVL_					0	0	0		chr1:183222211-183223158|278|65.01|0.69|6.55|+|2|LAMC2,None|1	chr1:183222211-183223158|278|65.01|0.69|6.55|+|2|LAMC2,None|1	chr1:183222211-183223158|278|65.01|0.69|6.55|+|2|LAMC2,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7701416015625	2	514.792392	1027.57023	-0.59464	-0.00030612	-4.0918	-0.0021064	-4.6864	-0.0024125	514.7901721047257	43.333	1.4923	43.193	42.773	44.265	-0.13929					73	41	3	0	0	0	0.023655	1	4037	4037		69.628	8.6557	1	1090200			18822	277	13164	13190	21271	21271					0.057549309656678815
GEMDLLRE	8	Unmodified	_GEMDLLRE_					0	0	0		DENND1B|p.G569R|1|0.05|ENSG00000213047|chr1:197511838-197511838|C/T|missense_variant	DENND1B|p.G569R|1|0.05|ENSG00000213047|chr1:197511838-197511838|C/T|missense_variant	DENND1B|p.G569R|1|0.05|ENSG00000213047|chr1:197511838-197511838|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.30084228515625	2	481.734217	961.453881	-0.27302	-0.00013152	4.3081	0.0020754	4.0351	0.0019438	481.7360335349198	17.065	1.0437	16.857	16.569	17.613	-0.20777					28	20	2	0	0	0	0.027866	1	166	166		24.203	6.8378	1	15198			18823	632	13165	13191	21272	21272					-0.02838755596530973
GEMELAEPWGE	11	Oxidation (M)	_GEM(Oxidation (M))ELAEPWGE_		GEM(1)ELAEPWGE		GEM(42)ELAEPWGE	0	0	1			REV__nc|ENSG00000071889|P98173-3|FAM3A	REV__nc|ENSG00000071889|P98173-3|FAM3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.8466491699219	3	421.844783	1262.51252	-0.097444	-4.1106E-05	3.2221	0.0013592	3.1247	0.0013181	421.84648922159715	33.295	2.6754	33.095	32.771	35.447	-0.20019					172	67	7	0	0	0	0.97516	1	2373	2373		42.338	6.8424	1	17150000	+		18824	20454	13166	13192	21273	21273		627			-0.10823743812761677
GEMPGLLCSL	10	Oxidation (M)	_GEM(Oxidation (M))PGLLCSL_		GEM(1)PGLLCSL		GEM(130)PGLLCSL	0	0	1			REV__ENST00000478328.1_1_7:127231492-127231768:+|nuORF	REV__ENST00000478328.1_1_7:127231492-127231768:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2977294921875	2	518.246103	1034.47765	-0.76922	-0.00039865	-0.91212	-0.0004727	-1.6813	-0.00087135	518.7468396129746	102.63	0.1731	102.63	102.48	102.65	0					9	3	3	0	0	0	0.03519	1	13152	13152		125.81	64.842	1	61532	+		18825	33365	13167	13193	21274	21274		913			-0.038206581543818174
GENEGNGR	8	Unmodified	_GENEGNGR_					0	0	0			REV__ENST00000552876.5_1_12:53714710-53714983:-|nuORF	REV__ENST00000552876.5_1_12:53714710-53714983:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8917541503906	2	416.68083	831.347108	-1.054	-0.00043917	0.18583	7.7434E-05	-0.86815	-0.00036174	416.6799181170236	33.798	0.35175	33.623	33.507	33.859	-0.17557					10	8	2	0	0	0	0.027866	1	2425	2425		23.042	0	1	38829	+		18826	34961	13168	13194	21275	21275					-0.07531169766696166
GENSPLYKY	9	Unmodified	_GENSPLYKY_					0	0	0		CON__Q95M17;ENSG00000134216|ENST00000369740|CHIA;nc|ENSG00000134216|Q9BZP6-3|CHIA;nc|ENSG00000134216|Q9BZP6-2|CHIA	CON__Q95M17	CON__Q95M17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7595825195312	2	535.761289	1069.50803	-0.7212	-0.00038639	0.25506	0.00013665	-0.46614	-0.00024974	535.7612742747892	42.165	1.2181	41.935	41.651	42.869	-0.23029					80	32	4	0	0	0	0.2508	1	3769	3769		82.241	2.5279	1	4853200		+	18827	570	13169	13195	21276	21276					-0.023948401733150604
GENYLKVI	8	Unmodified	_GENYLKVI_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.26409912109375	2	468.263468	934.512382	-0.20413	-9.5586E-05	-0.027243	-1.2757E-05	-0.23137	-0.00010834	468.2632989720304	43.521	1.1962	43.408	43.071	44.267	-0.11253					58	32	3	0	0	0	0.845	1	4001	4001		55.504	0	1	5788200	+		18828	25943	13170	13196	21277	21277					0.04250669040231969
GEPDGMLPQR	10	Unmodified	_GEPDGMLPQR_					0	0	0			REV__ENSG00000166159|ENST00000299194|LRTM2	REV__ENSG00000166159|ENST00000299194|LRTM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2967529296875	2	550.263673	1098.51279	-0.49706	-0.00027351	-2.8468	-0.0015665	-3.3438	-0.00184	550.261966074641	91.349	1.1856	91.225	90.834	92.02	-0.12341					68	27	3	0	0	0	0.03519	1	11173	11173		18.262	0	1	2952800	+		18829	25981	13171	13197	21278	21278					-0.032522793022280894
GEPDWVLDQV	10	Unmodified	_GEPDWVLDQV_					0	0	0			REV__nc|ENSG00000134759|Q6IA86-4|ELP2	REV__nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	579.7918701171875	2	579.277303	1156.54005	-1.119	-0.00064819	0.22507	0.00013038	-0.89389	-0.00051781	579.2781313176293	94.5	1.2147	94.5	94.007	95.222	0					38	28	2	0	0	0	0.03519	1	12084	12084		22.58	0	1	230230	+		18830	23478	13172	13198	21279	21279					-0.03195472490187967
GEPGETIVIS	10	Unmodified	_GEPGETIVIS_					0	0	0		ENSG00000112706|ENST00000369950|IMPG1;nc|ENSG00000112706|Q17R60-2|IMPG1;IMPG1|p.R517Dfs*13|1|0.48|ENSG00000112706|chr6:75950837-75950838|-/GACCATATCTTCGCCACCTGCACTTGATC|frameshift_variant	ENSG00000112706|ENST00000369950|IMPG1	ENSG00000112706|ENST00000369950|IMPG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.31475830078125	2	501.261122	1000.50769	1.024	0.00051327	-1.532	-0.00076793	-0.50804	-0.00025466	501.2602827553321	59.957	0.84331	59.76	59.46	60.303	-0.19742					39	21	3	0	0	0	0.03519	1	6731	6731		79.713	24.936	1	661760			18831	3235	13173	13199	21280	21280					0.007457401068108993
GEPKRRSRSNI	11	Unmodified	_GEPKRRSRSNI_					0	0	0		DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4;DLGAP4|p.A482Pfs*73|1|0.26|ENSG00000080845|chr20:36446732-36446732|G/-|frameshift_variant	DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant	DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.91265869140625	3	433.912853	1298.71673	-0.69342	-0.00030088	1.1735	0.00050922	0.48013	0.00020833	433.9131221716381	21.025	1.0195	21.025	20.704	21.723	0					79	20	5	0	0	0	0.99147	1	632	632		38.714	1.2059	1	1030200			18832	644	13174	13200	21281	21281					0.07932001183485227
GEPLDTSVR	9	Unmodified	_GEPLDTSVR_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.3009033203125	2	487.251089	972.487624	0.01864	9.0826E-06	1.596	0.00077766	1.6147	0.00078674	487.2520349360412	58.015	0.25356	58.015	57.872	58.126	0					10	6	2	0	0	0	0.024436	1	6547	6547		23.042	0	1	277820	+		18833	21403	13175	13201	21282	21282					0.00027989166869701876
GEPLLALHIV	10	Unmodified	_GEPLLALHIV_					0	0	0		ENST00000427063.6_1_10:29710449-29710551:+|nuORF	ENST00000427063.6_1_10:29710449-29710551:+|nuORF	ENST00000427063.6_1_10:29710449-29710551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3193359375	2	531.321317	1060.62808	-0.48852	-0.00025956	-3.8449	-0.0020429	-4.3334	-0.0023024	531.3192925010384	93.662	1.7888	93.662	93.261	95.05	0					114	42	5	0	0	0	1.1166	1	11879	11879		30.504	1.3541	1	4009000			18834	14101	13176	13202	21283	21283					0.1001919289108173
GEPLYMYV	8	Unmodified	_GEPLYMYV_					0	0	0			REV__ENST00000532725.1_1_8:145619271-145619424:-|nuORF	REV__ENST00000532725.1_1_8:145619271-145619424:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.79510498046875	2	486.230779	970.447005	-0.23919	-0.0001163	-4.4302	-0.0021541	-4.6694	-0.0022704	486.2282929792151	36.807	0.7608	36.59	36.088	36.849	-0.21661					26	18	2	0	0	0	0.027866	1	2897	2897		44.531	21.489	1	107280	+		18835	34557	13177	13203	21284	21284					-0.03940068477118075
GEPSTTKRVV	10	Unmodified	_GEPSTTKRVV_					0	0	0			REV__nc|ENSG00000187486|Q14654-2|KCNJ11	REV__nc|ENSG00000187486|Q14654-2|KCNJ11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7572021484375	2	537.301113	1072.58767	-0.71315	-0.00038318	0.85355	0.00045861	0.14039	7.5434E-05	537.3015917270129	38.007	0.47447	37.828	37.594	38.068	-0.17929					26	13	3	0	0	0	0.03519	1	3127	3127		16.473	0	1	704320	+		18836	27933	13178	13204	21285	21285					0.054282265006804664
GEPSTYMQP	9	Unmodified	_GEPSTYMQP_					0	0	0			REV__ENST00000600997.5_1_19:18701766-18702003:+|nuORF	REV__ENST00000600997.5_1_19:18701766-18702003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7707824707031	2	505.2184	1008.42225	-0.63319	-0.0003199	4.0707	0.0020566	3.4375	0.0017367	505.2203467017273	42.708	0.41611	42.482	42.22	42.636	-0.22597					17	10	2	0	0	0	0.02435	1	3859	3859		42.396	5.237	1	85651	+		18837	35852	13179	13205	21286	21286					-0.08162748350491711
GEPVSVYQI	9	Unmodified	_GEPVSVYQI_					0	0	0		PTPRM|p.A616E|1|0.29|ENSG00000173482|chr18:8088842-8088842|C/A|missense_variant	PTPRM|p.A616E|1|0.29|ENSG00000173482|chr18:8088842-8088842|C/A|missense_variant	PTPRM|p.A616E|1|0.29|ENSG00000173482|chr18:8088842-8088842|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.82122802734375	2	496.258382	990.502212	0.60957	0.0003025	2.6038	0.0012922	3.2134	0.0015947	496.2594636971456	42.23	0.53631	42.23	41.888	42.424	0					44	15	4	0	0	0	0.024381	1	3881	3881		29.15	0	1	1666100			18838	19008	13180	13206	21287	21287					0.006580613150163117
GEPVWIGKYV	10	Unmodified	_GEPVWIGKYV_					0	0	0			REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.80078125	2	574.310949	1146.60735	-1.0116	-0.00058094	0.31447	0.0001806	-0.69709	-0.00040034	574.3110197193378	43.554	0.94689	43.335	42.88	43.826	-0.21938					53	25	4	0	0	0	0.03519	1	4066	4066		25.574	6.4705	1	1465900	+		18839	27192	13181	13207	21288	21288					0.03990602511430552
GEQPRIFPSIP	11	Unmodified	_GEQPRIFPSIP_					0	0	0		ENST00000262096.12_1_8:17053025-17055120:+|nuORF	ENST00000262096.12_1_8:17053025-17055120:+|nuORF	ENST00000262096.12_1_8:17053025-17055120:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	3	414.227667	1239.66117	-0.19532	-8.0909E-05	2.4684	0.0010225	2.2731	0.00094158	414.2283322537179	20.809	0.3933	20.809	20.704	21.097	0					10	7	2	0	0	0	0.024736	1	617	617		19.263	15.18	1	19471			18840	11488	13182	13208	21289	21289					0.05092774943113909
GEQRIHARE	9	Unmodified	_GEQRIHARE_					0	0	0		nc|ENSG00000278763|Q5VT28|FAM27B	nc|ENSG00000278763|Q5VT28|FAM27B	nc|ENSG00000278763|Q5VT28|FAM27B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2642211914062	2	548.286328	1094.5581	-0.1124	-6.1627E-05	1.715	0.0009403	1.6026	0.00087867	548.2870684334486	46.217	0.40964	46.12	45.849	46.259	-0.096653					18	10	2	0	0	0	0.024477	1	4403	4403		27.882	4.8398	1	533850			18841	18801	13183	13209	21290	21290					0.014607072751687156
GEQSRRYPV	9	Unmodified	_GEQSRRYPV_					0	0	0			REV__ENST00000395148.6_1_2:202001787-202001970:+|nuORF	REV__ENST00000395148.6_1_2:202001787-202001970:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7880249023438	2	546.283254	1090.55196	-0.63333	-0.00034598	0.46369	0.00025331	-0.16964	-9.2671E-05	546.2834669108701	29.22	0.80964	29.047	28.766	29.575	-0.17258					26	18	2	0	0	0	0.024535	1	1824	1824		18.324	6.8134	1	689810	+		18842	31689	13184	13210	21291	21291					0.010301890436494432
GEQVAVVLV	9	Unmodified	_GEQVAVVLV_					0	0	0			REV__ATP2B3|p.P430Q|1|0.17|ENSG00000067842|chrX:153548805-153548805|C/A|missense_variant	REV__ATP2B3|p.P430Q|1|0.17|ENSG00000067842|chrX:153548805-153548805|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2893981933594	2	457.271293	912.528032	0.48503	0.00022179	1.1709	0.00053542	1.6559	0.00075721	457.27189857480306	93.751	0.12486	93.751	93.645	93.77	0					4	2	2	0	0	0	0.024405	1	11900	11900		35.618	5.1146	1	56615	+		18843	19185	13185	13211	21292	21292					0.06826955557289693
GERAATFI	8	Unmodified	_GERAATFI_					0	0	0			REV__ENSG00000169905|ENST00000609928|TOR1AIP2	REV__ENSG00000169905|ENST00000609928|TOR1AIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.73187255859375	2	432.732335	863.450116	0.26426	0.00011436	-1.3347	-0.00057759	-1.0705	-0.00046323	432.731609240746	98.399	2.1324	98.399	97.814	99.946	0					148	49	4	0	0	0	0.71063	1	12567	12567		66.429	18.514	1	3598600	+		18844	26414	13186	13212	21293	21293					0.01292942691884491
GERGRQLAR	9	Unmodified	_GERGRQLAR_					0	0	0			REV__ENSG00000160688|ENST00000292180|FLAD1	REV__ENSG00000160688|ENST00000292180|FLAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3184814453125	2	521.796863	1041.57917	-0.68432	-0.00035708	0.95238	0.00049695	0.26806	0.00013987	521.7985185492524	60.516	0.71462	60.303	59.852	60.567	-0.21339					36	18	3	0	0	0	0.024374	1	6894	6894		32.812	0	1	190000	+		18845	25335	13187	13213	21294	21294					0.06004717374685242
GERHREEV	8	Unmodified	_GERHREEV_					0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.26678466796875	2	506.251954	1010.48936	0.058033	2.938E-05	2.1375	0.0010821	2.1955	0.0011115	506.2532434644084	53.34	0.45356	53.213	52.913	53.366	-0.12705					18	11	2	0	0	0	0.027866	1	5543	5543		26.693	0	1	247600			18846	8904	13188	13214	21295	21295					-0.015469570245272735
GERKKKGRLDL	11	Unmodified	_GERKKKGRLDL_					0	0	0			REV__ENST00000428599.6_1_11:57529333-57558863:+|nuORF	REV__ENST00000428599.6_1_11:57529333-57558863:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.9141845703125	3	433.933366	1298.77827	-0.2537	-0.00011009	-0.31904	-0.00013844	-0.57275	-0.00024853	433.93367049372006	41.908	0.15022	41.676	41.583	41.733	-0.23186					5	3	2	0	0	0	0.024768	1	3708	3708		36.528	13.966	1	36624	+		18847	30859	13189	13215	21296	21296					0.14082932882752175
GERNERLAI	9	Unmodified	_GERNERLAI_					0	0	0			REV__ENSG00000262655|ENST00000576479|SPON1	REV__ENSG00000262655|ENST00000576479|SPON1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	529.291079	1056.56761	-0.38722	-0.00020495	3.5424	0.001875	3.1552	0.00167	529.2928165548519	39.825	0.75321	39.825	39.594	40.347	0					34	20	2	0	0	0	0.024263	1	3471	3471		42.396	6.7778	1	868680	+		18848	29125	13190	13216	21297	21297					0.04158475560689112
GERNERLAI	9	Unmodified	_GERNERLAI_					0	0	0			REV__ENSG00000262655|ENST00000576479|SPON1	REV__ENSG00000262655|ENST00000576479|SPON1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.282470703125	2	529.291079	1056.56761	-1.0781	-0.00057061	4.4437	0.002352	3.3656	0.0017814	529.2932400689948	39.911	0.74428	39.799	39.568	40.312	-0.11222					34	19	2	0	0	0	0.023007	1	3458	3458		76.774	0	1	637470	+		18849	29125	13190	13216	21298	21298					0.04158475560689112
GERNTHTVF	9	Unmodified	_GERNTHTVF_					0	0	0			REV__ENST00000473770.5_1_22:32015600-32017204:-|nuORF	REV__ENST00000473770.5_1_22:32015600-32017204:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.9852905273438	2	530.762155	1059.50976	-0.34703	-0.00018419	2.6501	0.0014066	2.3031	0.0012224	530.7634017891512	104.06	0.48865	104.07	103.83	104.32	0.0031357					24	11	3	0	0	0	0.024466	1	13300	13300		39.253	0	1	118340	+		18850	28971	13191	13217	21299	21299					-0.01761786364704676
GERPPRRSP	9	Unmodified	_GERPPRRSP_					0	0	0			REV__ENST00000598519.1_1_19:55988038-55991205:+|nuORF	REV__ENST00000598519.1_1_19:55988038-55991205:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2697143554688	2	526.291414	1050.56827	-1.266	-0.00066628	0.68996	0.00036312	-0.57602	-0.00030316	526.2919727465182	54.417	0.81738	54.417	53.976	54.794	0					29	23	2	0	0	0	0.024447	1	5963	5963		40.778	0	1	275330	+		18851	35822	13192	13218	21300	21300					0.045013150004251656
GERRRSYY	8	Unmodified	_GERRRSYY_					0	0	0		ENST00000539576.5_1_12:123465834-123466670:+|nuORF	ENST00000539576.5_1_12:123465834-123466670:+|nuORF	ENST00000539576.5_1_12:123465834-123466670:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8350830078125	2	543.775597	1085.53664	0.13172	7.1628E-05	-0.22608	-0.00012294	-0.094358	-5.1309E-05	543.7752086591191	19.173	0.39691	19.012	18.836	19.233	-0.16079					17	7	3	0	0	0	0.027866	1	390	390		38.806	9.6361	1	46505			18852	16403	13193	13219	21301	21301					-0.002706777535195215
GERRSREGL	9	Unmodified	_GERRSREGL_					0	0	0			REV__ENST00000564546.5_1_16:30076568-30077015:+|nuORF	REV__ENST00000564546.5_1_16:30076568-30077015:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3003540039062	2	530.286328	1058.5581	-0.11278	-5.9803E-05	-2.1402	-0.0011349	-2.253	-0.0011947	530.2852051488926	38.836	0.18568	38.61	38.483	38.669	-0.2257					6	4	2	0	0	0	0.024447	1	3219	3219		32.812	21.301	1	147440	+		18853	35252	13194	13220	21302	21302					0.03116707275171393
GERRTYPE	8	Unmodified	_GERRTYPE_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27276611328125	2	504.24888	1006.48321	0.027398	1.3816E-05	0.44982	0.00022682	0.47722	0.00024064	504.24899022652784	65.693	0.40872	65.731	65.489	65.898	0.037384					28	10	3	0	0	0	0.027866	1	7680	7680		60.294	4.7898	1	717250			18854	3747	13195	13221	21303	21303					-0.019774752560692832
GERSQVSTN	9	Unmodified	_GERSQVSTN_					0	0	0		ENSG00000170925|ENST00000302917|TEX13B	ENSG00000170925|ENST00000302917|TEX13B	ENSG00000170925|ENST00000302917|TEX13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7772216796875	2	489.23597	976.457387	-0.37479	-0.00018336	-3.7389	-0.0018292	-4.1137	-0.0020126	489.2346401692413	62.182	0.40323	61.956	61.611	62.015	-0.22663					12	10	2	0	0	0	0.023473	1	7147	7147		75.043	8.614	1	66270			18855	8095	13196	13222	21304	21304					-0.03178369498334632
GERTFTYPL	9	Unmodified	_GERTFTYPL_					0	0	0		ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	ENSG00000206043|ENST00000579455|C18orf63	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2789306640625	2	542.277106	1082.53966	0.012536	6.7977E-06	2.9782	0.001615	2.9907	0.0016218	542.2786379432164	63.463	1.3731	63.463	63.126	64.499	0					101	37	4	0	0	0	0.50848	1	7440	7440		58.782	0.97068	1	10565000			18856	10459	13197	13223	21305	21305					0.0016915258061089844
GERTTLPIL	9	Unmodified	_GERTTLPIL_					0	0	0		ENST00000500148.6_1_5:80535063-80546553:-|nuORF;ENST00000505295.1_1_5:80540896-80542784:-|nuORF	ENST00000500148.6_1_5:80535063-80546553:-|nuORF	ENST00000500148.6_1_5:80535063-80546553:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.32122802734375	2	500.295299	998.576045	-0.29021	-0.00014519	0.52881	0.00026456	0.2386	0.00011937	500.29533204313856	26.12	0.45104	25.952	25.737	26.188	-0.16816					22	13	2	0	0	0	0.024367	1	1278	1278		52.937	17.785	1	189120			18857	15644	13198	13224	21306	21306					0.07670029477333173
GERVPGKVN	9	Unmodified	_GERVPGKVN_					0	0	0			REV__ENST00000442562.1_1_17:18476116-18476272:+|nuORF	REV__ENST00000442562.1_1_17:18476116-18476272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.2688293457031	2	478.269616	954.524678	0.27614	0.00013207	0.20392	9.7527E-05	0.48006	0.0002296	478.2696960327596	101.37	0.55611	101.2	100.92	101.47	-0.17178					28	11	3	0	0	0	0.86013	1	12565	12565		35.152	1.6364	1	365670	+		18858	28911	13199	13225	21307	21307					0.045597055032772005
GERWCWFWAR	10	Unmodified	_GERWCWFWAR_					0	0	0		ENST00000319283.7_1_3:39149789-39149852:-|nuORF	ENST00000319283.7_1_3:39149789-39149852:-|nuORF	ENST00000319283.7_1_3:39149789-39149852:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2637939453125	3	466.217108	1395.62949	-0.12104	-5.643E-05	-1.3317	-0.00062088	-1.4528	-0.00067731	466.5505968828799	37.847	0.33165	37.668	37.443	37.775	-0.17929					26	8	4	0	0	0	0.03519	1	3054	3054		30.569	0	1	234030			18859	12183	13200	13226	21308	21308					-0.05249496291799005
GESDWHVKN	9	Unmodified	_GESDWHVKN_					0	0	0			REV__nc|ENSG00000102984|O75541-2|ZNF821	REV__nc|ENSG00000102984|O75541-2|ZNF821	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.2459716796875	2	536.246338	1070.47812	-0.27638	-0.00014821	1.2128	0.00065038	0.93646	0.00050218	536.2468376031907	70.616	1.6351	70.344	69.994	71.63	-0.27185					57	41	2	0	0	0	0.6504	1	8210	8210		49.442	3.4693	1	3861800	+		18860	36528	13201	13227	21309	21309					-0.054297791186627364
GESLGKGQSL	10	Unmodified	_GESLGKGQSL_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.25909423828125	2	488.258914	974.503274	-0.18482	-9.0238E-05	-0.37738	-0.00018426	-0.5622	-0.0002745	488.2587311374174	41.59	1.3785	41.462	41.08	42.459	-0.12857					109	39	5	0	0	0	0.96822	1	3713	3713		49.536	1.8787	1	17220000	+		18861	22001	13202	13228	21310	21310					0.01500275683918062
GESLVGPLL	9	Unmodified	_GESLVGPLL_					0	0	0			REV__ENST00000337851.8_1_5:155754076-155771499:+|nuORF	REV__ENST00000337851.8_1_5:155754076-155771499:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.77471923828125	2	442.758018	883.501483	-0.16219	-7.1809E-05	-2.7446	-0.0012152	-2.9068	-0.001287	442.7567607584701	21.856	0.66321	21.769	21.503	22.166	-0.086428					20	13	2	0	0	0	0.024443	1	704	704		35.201	0	1	82644	+		18862	30568	13203	13229	21311	21311					0.05507266665961197
GESLVGPLL	9	Unmodified	_GESLVGPLL_					0	0	0			REV__ENST00000337851.8_1_5:155754076-155771499:+|nuORF	REV__ENST00000337851.8_1_5:155754076-155771499:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.758018	883.501483	0.20703	9.1662E-05	-3.1163	-0.0013798	-2.9093	-0.0012881	442.7563065159104	22.001	0.28268	21.812	21.676	21.959	-0.18894	0.019521	-0.00061136	NaN	26.796	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16841	+		18863	30568	13203	13229							0.05507266665961197
GESRLLAAR	9	Unmodified	_GESRLLAAR_					0	0	0		ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.783203125	2	486.78289	971.551228	-0.072637	-3.5359E-05	-0.16659	-8.1093E-05	-0.23923	-0.00011645	486.7827186808254	32.257	0.59867	32.02	31.74	32.339	-0.23666					27	13	3	0	0	0	0.74711	1	2215	2215		42.864	3.8428	1	570750			18864	2835	13204	13230	21312	21312					0.0643139439459901
GESRLLAAR	9	Unmodified	_GESRLLAAR_					0	0	0		ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.78289	971.551228	-0.084493	-4.113E-05	-0.25942	-0.00012628	-0.34391	-0.00016741	486.7826766191107	32.242	0.54186	32.084	31.861	32.403	-0.15772	0.032638	2.187E-05	NaN	42.864	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502550			18865	2835	13204	13230							0.0643139439459901
GESSHIKLIS	10	Unmodified	_GESSHIKLIS_					0	0	0			REV__ENSG00000136839|ENST00000259362|OR13C9	REV__ENSG00000136839|ENST00000259362|OR13C9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2671508789062	2	535.795663	1069.57677	-0.075716	-4.0569E-05	1.3098	0.00070179	1.2341	0.00066122	535.7952644020017	54.099	0.88668	54.197	53.774	54.66	0.098015					62	25	4	0	0	0	0.03519	1	5875	5875		28.081	0	1	1761200	+		18866	23688	13205	13231	21313	21313					0.04476824126390966
GESTLLASYV	10	Unmodified	_GESTLLASYV_					0	0	0			REV__ENST00000507028.1_1_4:6381798-6381993:-|nuORF	REV__ENST00000507028.1_1_4:6381798-6381993:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.30517578125	2	520.268947	1038.52334	0.48717	0.00025346	1.5793	0.00082164	2.0664	0.0010751	520.2692910438517	93.795	0.80945	93.673	93.41	94.219	-0.12215					38	18	3	0	0	0	0.03519	1	11531	11531		54.776	0	1	88084	+		18867	34040	13206	13232	21314	21314					0.005620266238565819
GETALFGVLT	10	Unmodified	_GETALFGVLT_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2753601074219	2	504.274032	1006.53351	-0.63604	-0.00032074	3.9733	0.0020036	3.3372	0.0016829	504.27553991139047	56.788	0.88548	56.623	56.023	56.909	-0.16431					32	24	2	0	0	0	0.96965	1	6341	6341		49.442	1.5259	1	5147200	+		18868	21146	13207	13233	21315	21315					0.030506343490856125
GETFCDDPE	9	Unmodified	_GETFCDDPE_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.70391845703125	2	506.681847	1011.34914	-0.47181	-0.00023906	0.5019	0.00025431	0.030094	1.5248E-05	506.681610367823	32.423	0.20543	32.266	32.079	32.284	-0.15772					6	4	2	0	0	0	0.024541	1	2205	2205		6.3127	0	1	59526	+		18869	27755	13208	13234	21316	21316					-0.15607921863784213
GETIVASMAF	10	Unmodified	_GETIVASMAF_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.815185546875	2	513.252243	1024.48993	-0.81397	-0.00041777	1.6743	0.00085935	0.86036	0.00044158	513.252849700465	44.96	0.42249	44.96	44.725	45.147	0					20	11	2	0	0	0	0.03519	1	4327	4327		37.159	0	1	104600	+		18870	28151	13209	13235	21317	21317					-0.021332984196988036
GETNPVQIY	9	Unmodified	_GETNPVQIY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7537841796875	2	510.753464	1019.49238	-0.87701	-0.00044793	0.8265	0.00042214	-0.050506	-2.5796E-05	510.7536276421122	45.842	1.0592	45.639	45.098	46.157	-0.20226					77	29	4	0	0	0	0.35646	1	4362	4362		68.787	0.30212	1	4086900			18871	5048	13210	13236	21318	21318					-0.01659126690390167
GETNPVQIY	9	Unmodified	_GETNPVQIY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	510.753464	1019.49238	0.0015908	8.1248E-07	-0.13845	-7.0713E-05	-0.13686	-6.9901E-05	510.7532212924537	45.736	0.82555	45.639	45.326	46.152	-0.096653	-0.0041335	-0.00029188	NaN	68.787	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4163300			18872	5048	13210	13236							-0.01659126690390167
GETNPVQIY	9	Unmodified	_GETNPVQIY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	510.753464	1019.49238	-0.35905	-0.00018339	0.2301	0.00011753	-0.12895	-6.5863E-05	510.7533838353162	45.912	0.62827	45.651	45.416	46.044	-0.26118	0.0077716	8.4602E-05	NaN	68.787	49	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4145200			18873	5048	13210	13236							-0.01659126690390167
GEVALRAAL	9	Unmodified	_GEVALRAAL_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2;REV__ENSG00000148400|ENST00000651671|NOTCH1;REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.26885986328125	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.53979	1	3089	3089		56.721	1.9447	1	125590000	+		18874	20519;24614;23431	13211	13237	21319	21319					0.07029491134358068
GEVKLRPEARK	11	Unmodified	_GEVKLRPEARK_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8822021484375	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0075	1	11859	11859		35.152	2.3396	1	3453200			18875	5325	13212	13238	21320	21320					0.12211243991396259
GEVLRQLPT	9	Unmodified	_GEVLRQLPT_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3190002441406	2	506.792924	1011.57129	-0.65577	-0.00033234	0.25448	0.00012897	-0.4013	-0.00020337	506.7932073668401	53.179	0.62473	53.032	52.758	53.383	-0.14724					29	16	3	0	0	0	0.024344	1	5695	5695		54.776	8.8041	1	1011300	+		18876	20110	13213	13239	21321	21321					0.06597145334569632
GEVPDGYS	8	Unmodified	_GEVPDGYS_					0	0	0		nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.1758728027344	2	412.177058	822.339563	-1.4294	-0.00058918	-1.9709	-0.00081236	-3.4003	-0.0014015	412.1762961587461	91.863	2.0153	91.714	90.892	92.908	-0.1487					101	47	4	0	0	0	0.99042	1	11264	11264		38.806	1.647	1	2106500			18877	18693	13214	13240	21322	21322					-0.0787132208698722
GEVPDGYS	8	Unmodified	_GEVPDGYS_					0	0	0		nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	nc|ENSG00000211713|A0A1B0GX49|TRBV6-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.1756896972656	2	412.177058	822.339563	-0.20234	-8.3398E-05	-2.9914	-0.001233	-3.1937	-0.0013164	412.1757556858591	91.904	1.5124	91.78	91.413	92.926	-0.12341					55	35	2	0	0	0	1.0338	1	11289	11289		31.955	3.7006	1	2202200			18878	18693	13214	13240	21323	21323					-0.0787132208698722
GEVSLTGILPV	11	Unmodified	_GEVSLTGILPV_					0	0	0		LONP1|p.K888del|1|0.33|ENSG00000196365|chr19:5693336-5693338|TCT/-|inframe_deletion	LONP1|p.K888del|1|0.33|ENSG00000196365|chr19:5693336-5693338|TCT/-|inframe_deletion	LONP1|p.K888del|1|0.33|ENSG00000196365|chr19:5693336-5693338|TCT/-|inframe_deletion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.2554321289062	2	542.816064	1083.61758	-1.7798	-0.00096609	-1.0421	-0.00056565	-2.8218	-0.0015317	542.8154250042096	30.038	0.73472	30.038	29.732	30.467	0					48	17	4	0	0	0	0.024762	1	1920	1920		54.776	27.98	1	1570400			18879	17919	13215	13241	21324	21324					0.07911165445989354
GEVVIVLVV	9	Unmodified	_GEVVIVLVV_					0	0	0			REV__ENST00000435711.5_2_2:178081475-178083842:+|nuORF	REV__ENST00000435711.5_2_2:178081475-178083842:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7999267578125	2	463.799686	925.584819	0.0090014	4.1748E-06	0.37467	0.00017377	0.38367	0.00017795	463.7997091602389	103.02	1.1333	103.03	102.74	103.88	0.0054245					61	28	3	0	0	0	0.96855	1	13200	13200		26.796	0.10319	1	753020	+		18880	32445	13216	13242	21325	21325					0.11905003113804469
GEVWKKLL	8	Unmodified	_GEVWKKLL_					0	0	0		nc|ENSG00000132199|Q7L5Y1-7|ENOSF1;ENST00000583973.5_1_18:674307-686832:-|nuORF;nc|ENSG00000132199|Q7L5Y1-6|ENOSF1;nc|ENSG00000132199|Q7L5Y1-2|ENOSF1;ENSG00000132199|ENST00000647584|ENOSF1;nc|ENSG00000132199|Q7L5Y1-4|ENOSF1;nc|ENSG00000132199|Q7L5Y1-5|ENOSF1	nc|ENSG00000132199|Q7L5Y1-7|ENOSF1	nc|ENSG00000132199|Q7L5Y1-7|ENOSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2633361816406	2	486.797478	971.580402	-1.1486	-0.00055914	-3.5684	-0.0017371	-4.717	-0.0022962	486.7956254737211	30.816	0.62262	30.816	30.55	31.173	0					36	14	3	0	0	0	0.027866	1	1988	1988		40.573	0	1	760160			18881	4582	13217	13243	21326	21326					0.09347538690883539
GEWLNSPL	8	Unmodified	_GEWLNSPL_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.76397705078125	2	458.232168	914.449782	0.25999	0.00011913	-3.2342	-0.001482	-2.9742	-0.0013629	458.23053072921766	23.926	0.39937	23.71	23.51	23.909	-0.2151					14	8	2	0	0	0	0.027866	1	976	976		55.504	0	1	135150	+		18882	24649	13218	13244	21327	21327					-0.010864770279454206
GEWRARAKGEG	11	Unmodified	_GEWRARAKGEG_					0	0	0			REV__ENST00000267512.9_1_14:65415074-65417765:-|nuORF	REV__ENST00000267512.9_1_14:65415074-65417765:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2108459472656	3	406.210899	1215.61087	0.1269	5.1546E-05	0.011622	4.721E-06	0.13852	5.6267E-05	406.21084739141935	27.384	0.97518	27.142	26.869	27.845	-0.24217					56	22	4	0	0	0	0.94699	1	1507	1507		48.602	4.9508	1	1456300	+		18883	29771	13219	13245	21328	21328					0.01168665337991115
GEWRARAKGEG	11	Unmodified	_GEWRARAKGEG_					0	0	0			REV__ENST00000267512.9_1_14:65415074-65417765:-|nuORF	REV__ENST00000267512.9_1_14:65415074-65417765:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2109680175781	3	406.210899	1215.61087	0.089712	3.6442E-05	0.13571	5.5127E-05	0.22542	9.1569E-05	406.2108622078549	27.262	0.9265	27.093	26.723	27.649	-0.16816					59	21	4	0	0	0	0.97516	1	1494	1494		42.338	0	1	1173800	+		18884	29771	13219	13245	21329	21329					0.01168665337991115
GEYCLADI	8	Unmodified	_GEYCLADI_					0	0	0		ENST00000420971.5_3_22:40322765-40343130:+|nuORF	ENST00000420971.5_3_22:40322765-40343130:+|nuORF	ENST00000420971.5_3_22:40322765-40343130:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2658386230469	2	442.196936	882.379319	-0.2881	-0.0001274	-3.144	-0.0013903	-3.4321	-0.0015177	442.19599334062883	60.333	0.36482	60.333	60.181	60.546	0					14	9	3	0	0	0	0.027866	1	6910	6910		18.324	8.1396	1	58436			18885	13987	13220	13246	21330	21330					-0.06657518407951102
GEYDTDLVH	9	Unmodified	_GEYDTDLVH_					0	0	0			REV__ENST00000479767.1_1_9:139648952-139650038:-|nuORF	REV__ENST00000479767.1_1_9:139648952-139650038:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.7704467773438	2	524.732729	1047.4509	-1.7054	-0.00089489	-0.97148	-0.00050977	-2.6769	-0.0014047	524.732187739361	30.827	0.41273	30.827	30.634	31.047	0					17	9	2	0	0	0	0.024506	1	2011	2011		30.504	3.7075	1	242950	+		18886	28558	13221	13247	21331	21331					-0.0709230744969318
GEYEKTVSV	9	Unmodified	_GEYEKTVSV_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.25421142578125	2	506.253297	1010.49204	-0.31049	-0.00015719	0.085035	4.3049E-05	-0.22545	-0.00011414	506.25315495588023	56.375	0.79237	56.218	55.933	56.725	-0.15656					51	19	4	0	0	0	0.45795	1	6109	6109		62.107	4.2961	1	1806900	+		18887	27297	13222	13248	21332	21332					-0.012785464102307742
GFAIHAYKET	10	Unmodified	_GFAIHAYKET_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.829345703125	2	568.790381	1135.56621	-1.2277	-0.00069832	-2.1997	-0.0012512	-3.4275	-0.0019495	569.2908113456995	65.265	0.48863	65.063	64.778	65.266	-0.20253					19	11	2	0	0	0	0.03519	1	7429	7429		31.955	4.0726	1	160770			18888	5209	13223	13249	21333	21333					0.003848414719413995
GFAKGCKSCK	10	Unmodified	_GFAKGCKSCK_					0	0	0			REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7545776367188	2	514.75443	1027.49431	-0.46329	-0.00023848	-0.27714	-0.00014266	-0.74043	-0.00038114	514.7541467430424	27.377	0.77269	27.364	27.067	27.84	-0.012983					45	20	3	0	0	0	1.0122	1	1487	1487		44.377	7.2181	1	672350	+		18889	26758	13224	13250	21334	21334					-0.018341124777634832
GFAVHMKIY	9	Oxidation (M)	_GFAVHM(Oxidation (M))KIY_		GFAVHM(1)KIY		GFAVHM(50)KIY	0	0	1		ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	ENSG00000143315|ENST00000368090|PIGM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.2797241210938	2	541.278595	1080.54264	-1.0395	-0.00056265	2.9199	0.0015805	1.8804	0.0010178	541.2800616801876	45.166	0.60077	45.066	44.789	45.39	-0.099445					29	16	2	0	0	0	0.64155	1	4274	4274		50.025	11.218	1	2252800			18890	5630	13225	13251	21335	21335		240			0.0055870443377443735
GFAWTLGLL	9	Unmodified	_GFAWTLGLL_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1;REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.21954345703125	2	489.276378	976.538203	0.079264	3.8782E-05	-3.0731	-0.0015036	-2.9939	-0.0014648	489.27460328544043	29.53	0.92686	29.38	29.129	30.056	-0.14952					35	21	3	0	0	0	0.024386	1	1759	1759		52.299	21.796	1	47992	+		18891	24719;20459	13226	13252	21336	21336					0.048995632825153734
GFCSVSQRYCN	11	Carbamidomethyl (C)	_GFCSVSQRYC(Carbamidomethyl (C))N_	GFCSVSQRYC(1)N		GFC(-35)SVSQRYC(35)N		0	1	0		ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	440.8533630371094	3	440.853507	1319.53869	-0.098479	-4.3415E-05	0.16003	7.055E-05	0.061551	2.7135E-05	440.8534920392115	31.682	2.2836	31.497	31.136	33.419	-0.18503					122	55	4	0	0	0	0.98082	1	2167	2167		41.08	6.9936	2	2425400			18892	9772	13227	13253	21337	21337	131				-0.10829753122243346
GFDMDVFEDFV	11	Unmodified	_GFDMDVFEDFV_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	440.85357666015625	3	440.853278	1319.538	-0.30877	-0.00013612	0.19169	8.4508E-05	-0.11708	-5.1615E-05	440.85357296515053	31.757	1.9223	31.517	31.222	33.145	-0.23979					141	46	6	0	0	0	1.0281	1	2173	2173		30.569	0	1	2999200	+		18893	28600	13228	13254	21338	21338					-0.10898269290305507
GFDMDVFEDFV	11	Unmodified	_GFDMDVFEDFV_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	440.8538513183594	3	440.853278	1319.538	-0.03758	-1.6567E-05	0.55523	0.00024478	0.51765	0.00022821	440.8534410776844	31.711	2.4532	31.558	31.232	33.685	-0.15283					142	60	4	0	0	0	1.0465	1	2143	2143		26.063	0	1	2753900	+		18894	28600	13228	13254	21339	21339					-0.10898269290305507
GFDPEDGETIY	11	Unmodified	_GFDPEDGETIY_					0	0	0		nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.760498046875	2	621.761683	1241.50881	-1.0457	-0.0006502	-1.5213	-0.00094591	-2.5671	-0.0015961	621.7606160963422	70.883	1.0351	70.626	70.411	71.446	-0.25713					59	25	3	0	0	0	0.782	1	8286	8286		58.782	0.55203	1	4215700			18895	18706	13229	13255	21340	21340					-0.10228090314922156
GFFEQYVEV	9	Unmodified	_GFFEQYVEV_					0	0	0			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2176513671875	2	559.263665	1116.51278	-0.89253	-0.00049916	-4.2044	-0.0023514	-5.097	-0.0028505	559.2612557814865	43.809	0.66558	43.565	43.344	44.01	-0.2444					44	17	4	0	0	0	0.024466	1	4056	4056		39.253	6.4404	1	1193200	+		18896	21032	13230	13256	21341	21341					-0.040819560305635605
GFFFFFILK	9	Unmodified	_GFFFFFILK_					0	0	0			REV__ENST00000579713.1_1_18:21574264-21574369:-|nuORF	REV__ENST00000579713.1_1_18:21574264-21574369:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3054809570312	2	583.325871	1164.63719	0.117	6.8247E-05	-4.076	-0.0023776	-3.959	-0.0023094	583.323368291168	81.559	0.4607	81.33	81.147	81.608	-0.22891					17	10	3	0	0	0	0.024466	1	9812	9812		33.516	0	1	54223	+		18897	35508	13231	13257	21342	21342					0.06145586247407664
GFFGGAAFHNK	11	Unmodified	_GFFGGAAFHNK_					0	0	0			REV__MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant	REV__MECOM|p.H313Qfs*7|1|0.07|ENSG00000085276|chr3:169116335-169116369|TAACAGGAGAACTAGCAGGTATCAAAGGAGGCCTG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7819213867188	2	576.78289	1151.55123	-0.73592	-0.00042447	-0.29459	-0.00016992	-1.0305	-0.00059438	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	1.0054	1	7583	7583		35.618	1.4457	1	1832600	+		18898	20745	13232	13258	21343	21343					-0.018486056054143774
GFFIIIPLAQF	11	Unmodified	_GFFIIIPLAQF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.58197021484375	3	422.58127	1264.72198	0.90621	0.00038295	0.82325	0.00034789	1.7295	0.00073084	422.58153013425874	95.949	3.134	95.826	94.641	97.774	-0.12305					212	71	4	0	0	0	1.0614	1	11946	11946		14.086	0	1	631120	+		18899	23793	13233	13259	21344	21344					0.10020911993342452
GFFLELFHRNS	11	Unmodified	_GFFLELFHRNS_					0	0	0		ENST00000577830.5_2_17:55938859-55939276:-|nuORF	ENST00000577830.5_2_17:55938859-55939276:-|nuORF	ENST00000577830.5_2_17:55938859-55939276:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.26904296875	3	456.234933	1365.68297	-0.15589	-7.1121E-05	-2.2528	-0.0010278	-2.4087	-0.0010989	456.2339209983443	27.743	0.33601	27.586	27.349	27.685	-0.15664					11	7	2	0	0	0	0.024792	1	1546	1546		13.508	5.4736	1	74121			18900	17123	13234	13260	21345	21345					0.01475579691737039
GFFLKKFFG	9	Unmodified	_GFFLKKFFG_					0	0	0			REV__ENST00000492571.1_1_1:7993262-7996549:-|nuORF	REV__ENST00000492571.1_1_1:7993262-7996549:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.8060302734375	2	545.807845	1089.60114	-0.90555	-0.00049425	-3.1917	-0.001742	-4.0972	-0.0022363	545.8060610052194	72.723	1.3641	72.525	71.788	73.152	-0.1981					94	32	4	0	0	0	0.60698	1	8518	8518		52.299	0.96372	1	2589900	+		18901	33744	13235	13261	21346	21346					0.059921290705460706
GFFQTLSL	8	Unmodified	_GFFQTLSL_					0	0	0			REV__ENSG00000113328|ENST00000340828|CCNG1	REV__ENSG00000113328|ENST00000340828|CCNG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.26458740234375	2	456.744911	911.475269	-0.67327	-0.00030751	1.2123	0.00055369	0.53899	0.00024618	456.74523904024466	81.176	0.96327	81.045	80.741	81.705	-0.13075					51	23	4	0	0	0	0.027866	1	10153	10153		55.504	9.5523	1	1234900	+		18902	22061	13236	13262	21347	21347					0.015989974944886853
GFFSLLKLL	9	Unmodified	_GFFSLLKLL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3052978515625	2	519.323328	1036.6321	-0.31949	-0.00016592	-3.0849	-0.0016021	-3.4044	-0.001768	519.3244311513688	93.71	0.57824	93.71	93.429	94.007	0					23	13	3	0	0	0	0.02435	1	11884	11884		51.335	8.9393	1	65855	+		18903	20141	13237	13263	21348	21348					0.11525282384786806
GFGECRLVSQ	10	Unmodified	_GFGECRLVSQ_					0	0	0			REV__chr5:465526-465718|295|15.16|0.28|5.74|+|0|None,EXOC3|1	REV__chr5:465526-465718|295|15.16|0.28|5.74|+|0|None,EXOC3|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3231811523438	2	548.266216	1094.51788	-0.8905	-0.00048823	-3.0573	-0.0016762	-3.9478	-0.0021645	548.2644127010961	75.454	0.58444	75.209	74.997	75.581	-0.24455					27	15	2	0	0	0	0.03519	1	9208	9208		56.721	15.943	1	1722800	+		18904	19446	13238	13264	21349	21349					-0.025599754396125718
GFGEVEHT	8	Unmodified	_GFGEVEHT_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2200622558594	2	438.198325	874.382096	-0.41289	-0.00018093	0.9764	0.00042786	0.5635	0.00024693	438.1986833506292	44.821	0.52519	44.821	44.622	45.147	0					26	14	2	0	0	0	0.027866	1	4318	4318		35.201	9.7505	1	377470			18905	1930	13239	13265	21350	21350					-0.0601192695876307
GFGFLSVSLI	10	Unmodified	_GFGFLSVSLI_					0	0	0		nc|ENSG00000104635|Q15043-3|SLC39A14	nc|ENSG00000104635|Q15043-3|SLC39A14	nc|ENSG00000104635|Q15043-3|SLC39A14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2919921875	2	520.294768	1038.57498	-0.84119	-0.00043767	-3.1257	-0.0016263	-3.9669	-0.002064	520.2930484529401	72.967	0.74834	72.967	72.614	73.362	0					46	18	4	0	0	0	0.82838	1	8890	8890		58.782	2.0609	1	1349800			18906	18144	13240	13266	21351	21351					0.057238151084447964
GFGGPPLEVDE	11	Unmodified	_GFGGPPLEVDE_					0	0	0			REV__ENSG00000196990|ENST00000673969|FAM163B	REV__ENSG00000196990|ENST00000673969|FAM163B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2847900390625	2	558.764029	1115.5135	-0.2346	-0.00013109	-4.2562	-0.0023782	-4.4908	-0.0025093	558.7612010890837	73.648	0.43056	73.372	73.174	73.605	-0.2769					14	10	2	0	0	0	0.024743	1	8628	8628		35.618	8.9254	1	104140	+		18907	28249	13241	13267	21352	21352					-0.03963161381511782
GFGIPLNITWT	11	Unmodified	_GFGIPLNITWT_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.8876953125	3	406.888763	1217.64446	-1.269	-0.00051634	-1.6213	-0.00065971	-2.8903	-0.001176	406.8880718104609	33.643	0.94307	33.477	33.156	34.099	-0.16565					58	23	4	0	0	0	1.0022	1	2412	2412		36.318	1.1656	1	2619100	+		18908	25803	13242	13268	21353	21353					0.04434274057166476
GFGIRLLPQ	9	Unmodified	_GFGIRLLPQ_					0	0	0		ENST00000450172.5_2_3:46722734-46730936:-|nuORF;ENSG00000178038|ENST00000318962|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL	ENST00000450172.5_2_3:46722734-46730936:-|nuORF	ENST00000450172.5_2_3:46722734-46730936:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7999267578125	2	500.800552	999.58655	-1.2078	-0.00060485	0.27794	0.00013919	-0.92983	-0.00046566	500.80056538829484	44.675	0.76567	44.464	44.184	44.95	-0.21109					55	19	4	0	0	0	0.52323	1	4187	4187		57.811	2.3071	1	3234600			18909	8787	13243	13269	21354	21354					0.08674056922416185
GFGLPLAFLI	10	Unmodified	_GFGLPLAFLI_					0	0	0		ENST00000397776.2_1_1:158424733-158425060:+|nuORF	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	ENST00000397776.2_1_1:158424733-158425060:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.7789916992188	2	524.315503	1046.61645	-0.87728	-0.00045997	-3.3977	-0.0017815	-4.275	-0.0022414	524.3134860278919	78.929	1.0839	78.929	78.405	79.489	0					45	25	2	0	0	0	0.03519	1	9713	9713		35.201	8.4046	1	123280			18910	13602	13244	13270	21355	21355					0.09500995867756501
GFGSPSRL	8	Unmodified	_GFGSPSRL_					0	0	0			REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.7188415527344	2	410.719227	819.423902	0.76249	0.00031317	-1.8416	-0.00075639	-1.0791	-0.00044322	410.71839091260426	95.381	1.9576	95.381	94.702	96.659	0					107	45	4	0	0	0	0.99042	1	12165	12165		38.806	5.2906	1	3807300	+		18911	25612	13245	13271	21356	21356					0.00696673520440072
GFGTARPVVLL	11	Unmodified	_GFGTARPVVLL_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.3090209960938	2	565.340041	1128.66553	0.25366	0.0001434	2.649	0.0014976	2.9027	0.001641	565.3414329319393	83.961	0.43208	83.823	83.588	84.02	-0.13789					15	9	2	0	0	0	0.024735	1	10108	10108		38.754	5.9412	1	48657			18912	5372	13246	13272	21357	21357					0.10634284156708418
GFGTARPVVLL	11	Unmodified	_GFGTARPVVLL_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.340041	1128.66553	0.57669	0.00032603	2.6403	0.0014927	3.217	0.0018187	565.3413001124641	84.028	0.42958	83.816	83.6	84.029	-0.21158	-0.003542	-2.9437E-06	NaN	37.508	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70049			18913	5372	13246	13272							0.10634284156708418
GFGVFFLFF	9	Unmodified	_GFGVFFLFF_					0	0	0		ENST00000545113.1_1_12:21654752-21659919:+|nuORF;ENST00000545093.5_1_12:21654752-21665258:+|nuORF;ENSG00000111711|ENST00000229314|GOLT1B	ENST00000545113.1_1_12:21654752-21659919:+|nuORF	ENST00000545113.1_1_12:21654752-21659919:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.801025390625	2	540.781296	1079.54804	-0.61122	-0.00033054	3.5668	0.0019289	2.9556	0.0015983	540.7829651121006	33.76	1.3275	33.559	33.286	34.613	-0.20019					54	33	3	0	0	0	0.024389	1	2539	2539		39.021	21.657	1	877130			18914	3139	13247	13273	21358	21358					0.01144751287915824
GFGWAAMII	9	Unmodified	_GFGWAAMII_					0	0	0		ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.77874755859375	2	483.249306	964.484059	-0.1758	-8.4957E-05	1.9299	0.00093262	1.7541	0.00084767	483.2500843556653	62.521	0.50993	62.263	61.858	62.368	-0.25824					24	12	3	0	0	0	0.024475	1	6986	6986		21.702	0	1	672960			18915	13256	13248	13274	21359	21359					0.0003964785930747894
GFGWAAMII	9	Unmodified	_GFGWAAMII_					0	0	0		ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.249306	964.484059	0.0088422	4.273E-06	2.1271	0.0010279	2.136	0.0010322	483.25009227867884	62.363	0.39088	62.149	61.892	62.283	-0.21375	-0.048238	-0.00042597	NaN	21.702	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457640			18916	13256	13248	13274							0.0003964785930747894
GFHIILVHKN	10	Unmodified	_GFHIILVHKN_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1;ENST00000548216.2_1_16:15724122-15728701:-|nuORF	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3434448242188	2	589.345658	1176.67676	-1.4778	-0.00087093	-2.7044	-0.0015938	-4.1822	-0.0024647	589.3438908095844	95.449	1.0217	95.449	95.093	96.115	0					57	23	3	0	0	0	1.1166	1	12155	12155		30.504	1.3336	1	679850			18917	7604	13249	13275	21360	21360					0.09549106250869954
GFHRQLLY	8	Unmodified	_GFHRQLLY_					0	0	0		nc|nan|Q8N4M7|C10orf126	nc|nan|Q8N4M7|C10orf126	nc|nan|Q8N4M7|C10orf126	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.32275390625	2	517.282526	1032.5505	-0.3366	-0.00017412	-0.94687	-0.0004898	-1.2835	-0.00066392	517.2817434230122	73.075	0.74046	72.88	72.416	73.156	-0.19441					24	17	2	0	0	0	0.027866	1	8580	8580		35.201	6.9464	1	174870			18918	18856	13250	13276	21361	21361					0.03552599745557927
GFIASFLDF	9	Unmodified	_GFIASFLDF_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7658386230469	2	508.758018	1015.50148	4.4185	0.0022479	2.2725	0.0011562	6.691	0.0034041	508.7582631717605	17.486	0.24365	17.235	17.128	17.371	-0.25049					5	4	2	0	0	0	0.024541	1	156	156		25.45	3.7478	1	5890.7			18919	1240	13251	13277	21362	21362					-0.005647333340448313
GFIEEGTKVT	10	Unmodified	_GFIEEGTKVT_					0	0	0			REV__nc|ENSG00000126457|Q99873-5|PRMT1	REV__nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2571411132812	2	540.782222	1079.54989	-1.0697	-0.00057845	-0.49163	-0.00026586	-1.5613	-0.00084431	540.7819114479196	48.979	0.97382	48.797	48.408	49.382	-0.18206					70	25	4	0	0	0	0.03519	1	4836	4836		40.778	13.731	1	1293600	+		18920	22895	13252	13278	21363	21363					0.013297155152031337
GFIGGGLPAWI	11	Unmodified	_GFIGGGLPAWI_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2974853515625	2	544.300384	1086.58622	0.31966	0.00017399	-3.6089	-0.0019643	-3.2892	-0.0017903	544.2981866528766	77.036	0.45852	76.784	76.484	76.943	-0.25162					24	10	3	0	0	0	0.92653	1	9182	9182		50.025	2.3672	1	311400	+		18921	23008	13253	13279	21364	21364					0.04638637202560858
GFIGGGLPAWI	11	Unmodified	_GFIGGGLPAWI_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.300384	1086.58622	0.17091	9.3024E-05	-3.3183	-0.0018062	-3.1474	-0.0017132	544.2983574646902	77.081	0.45644	76.813	76.509	76.966	-0.26807	0.037285	-0.00024395	NaN	50.025	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368540	+		18922	23008	13253	13279							0.04638637202560858
GFIGGGLPAWI	11	Unmodified	_GFIGGGLPAWI_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	544.300384	1086.58622	0.31966	0.00017399	-3.6089	-0.0019643	-3.2892	-0.0017903	544.2981866528766	77.036	0.45852	76.784	76.484	76.943	-0.25162	0.0080743	-0.00056025	NaN	50.025	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311400	+		18923	23008	13253	13279							0.04638637202560858
GFIGGGLPAWI	11	Unmodified	_GFIGGGLPAWI_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.300384	1086.58622	-0.89316	-0.00048615	-2.3496	-0.0012789	-3.2428	-0.0017651	544.2987021754906	76.899	0.46061	76.731	76.439	76.899	-0.16854	-0.045359	0.00081057	NaN	50.025	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367180	+		18924	23008	13253	13279							0.04638637202560858
GFIIAFVLAF	10	Unmodified	_GFIIAFVLAF_					0	0	0		SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant;ENSG00000144136|ENST00000272542|SLC20A1	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.3026123046875	2	549.323328	1096.6321	-0.59096	-0.00032463	2.2086	0.0012133	1.6177	0.00088864	549.3241598899693	78.906	0.29425	78.925	78.693	78.987	0.018677					10	6	2	0	0	0	0.03519	1	9706	9706		35.201	0	1	82249			18925	5718	13254	13280	21365	21365					0.08765282384797501
GFILGRGRSIT	11	Unmodified	_GFILGRGRSIT_					0	0	0		ENST00000476805.2_1_2:64977516-64977744:-|nuORF	ENST00000476805.2_1_2:64977516-64977744:-|nuORF	ENST00000476805.2_1_2:64977516-64977744:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3271484375	2	588.846022	1175.67749	-0.7483	-0.00044064	3.6485	0.0021484	2.9002	0.0017078	588.8484589896137	50.062	0.37411	49.782	49.657	50.031	-0.27977					11	9	2	0	0	0	0.024736	1	5047	5047		44.377	11.565	1	95436			18926	15098	13255	13281	21366	21366					0.09667900899898996
GFILGRGRSIT	11	Unmodified	_GFILGRGRSIT_					0	0	0		ENST00000476805.2_1_2:64977516-64977744:-|nuORF	ENST00000476805.2_1_2:64977516-64977744:-|nuORF	ENST00000476805.2_1_2:64977516-64977744:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	588.846022	1175.67749	-0.16547	-9.7438E-05	3.4702	0.0020434	3.3047	0.001946	588.8480236121294	49.971	0.29399	49.79	49.607	49.901	-0.18071	0.0040318	-9.6105E-05	NaN	52.937	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102800			18927	15098	13255	13281							0.09667900899898996
GFILTVKGTEL	11	Unmodified	_GFILTVKGTEL_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-5|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.343017578125	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0344	1	11534	11534		29.17	3.1067	1	15816000			18928	18160;18161	13256	13282	21367	21367					0.09415427371459373
GFILVQTQP	9	Unmodified	_GFILVQTQP_					0	0	0		ATP13A4|p.R995T|1|0.15|ENSG00000127249|chr3:193414609-193414609|C/G|missense_variant	ATP13A4|p.R995T|1|0.15|ENSG00000127249|chr3:193414609-193414609|C/G|missense_variant	ATP13A4|p.R995T|1|0.15|ENSG00000127249|chr3:193414609-193414609|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2858581542969	2	501.784567	1001.55458	0.05526	2.7729E-05	-0.75573	-0.00037921	-0.70047	-0.00035148	501.7839443871086	63.083	0.88304	62.862	62.489	63.372	-0.22097					49	22	3	0	0	0	0.54416	1	7113	7113		56.434	5.2411	1	2332600			18929	151	13257	13283	21368	21368					0.05386644448606148
GFINQLCPLY	10	Unmodified	_GFINQLCPLY_					0	0	0			REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4;REV__ENSG00000124140|ENST00000243964|SLC12A5;REV__ENST00000573023.6_1_16:67984709-67996179:-|nuORF;REV__SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.7772216796875	2	584.296985	1166.57942	-0.21382	-0.00012494	-3.5803	-0.002092	-3.7941	-0.0022169	584.2948973521268	63.263	0.39938	63.042	62.858	63.257	-0.22097					10	9	2	0	0	0	0.03519	1	7118	7118		37.159	8.9048	1	169520	+		18930	22735;22727;23992;35429	13258	13284	21369	21369					0.0027895625967175874
GFINRLETL	9	Unmodified	_GFINRLETL_					0	0	0			REV__ENST00000533006.1_1_1:74663962-74715145:+|nuORF	REV__ENST00000533006.1_1_1:74663962-74715145:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8026733398438	2	531.800749	1061.58694	-0.8456	-0.00044969	3.4572	0.0018386	2.6116	0.0013889	531.8030823730422	79.314	1.6758	79.314	78.91	80.585	0					67	39	3	0	0	0	0.75397	1	9852	9852		42.396	1.8235	1	650440	+		18931	22303	13259	13285	21370	21370					0.05861431851622001
GFIPPPPLTL	10	Unmodified	_GFIPPPPLTL_					0	0	0			REV__ENST00000164227.9_1_19:45262916-45263075:+|nuORF	REV__ENST00000164227.9_1_19:45262916-45263075:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7892456054688	2	526.312961	1050.61137	-0.20429	-0.00010752	3.2055	0.0016871	3.0012	0.0015796	526.3144221090895	77.044	1.1614	76.881	75.784	76.945	-0.16267					48	27	3	0	0	0	0.03519	1	9034	9034		45.952	1.8352	1	293550	+		18932	29275	13260	13286	21371	21371					0.08808692005140983
GFIQTATVLAI	11	Unmodified	_GFIQTATVLAI_					0	0	0		ENSG00000148215|ENST00000373680|OR5C1	ENSG00000148215|ENST00000373680|OR5C1	ENSG00000148215|ENST00000373680|OR5C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3297729492188	2	567.331882	1132.64921	-0.57331	-0.00032526	-2.9862	-0.0016942	-3.5595	-0.0020194	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.0557	1	10995	10995		23.523	0	1	5699600			18933	6009	13261	13287	21372	21372					0.08819158199935373
GFIQTATVLAI	11	Unmodified	_GFIQTATVLAI_					0	0	0		ENSG00000148215|ENST00000373680|OR5C1	ENSG00000148215|ENST00000373680|OR5C1	ENSG00000148215|ENST00000373680|OR5C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3303833007812	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.0238	1	11054	11054		31.53	4.4825	1	17705000			18934	6009	13261	13287	21373	21373					0.08819158199935373
GFISGLPFLS	10	Unmodified	_GFISGLPFLS_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2655029296875	2	519.286943	1036.55933	-0.35868	-0.00018626	-2.5371	-0.0013175	-2.8958	-0.0015038	519.2853713589377	51.491	0.80351	51.215	50.589	51.393	-0.27643					32	19	2	0	0	0	0.03519	1	5303	5303		44.117	3.5442	1	2062800			18935	5011	13262	13288	21374	21374					0.042515285913850676
GFITHVVQ	8	Unmodified	_GFITHVVQ_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.78106689453125	2	450.750527	899.486502	0.44345	0.00019989	-4.0785	-0.0018384	-3.635	-0.0016385	450.7477148723374	98.684	0.17282	98.684	98.562	98.734	0					5	3	2	0	0	0	0.027866	1	12596	12596		19.36	0	1	16335			18936	3753	13263	13289	21375	21375					0.03273819588616789
GFITIRVPIVK	11	Unmodified	_GFITIRVPIVK_					0	0	0			REV__ENST00000380620.8_1_21:41018506-41031729:+|nuORF	REV__ENST00000380620.8_1_21:41018506-41031729:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.9021606445312	2	621.900266	1241.78598	0.08008	4.9802E-05	0.82368	0.00051225	0.90376	0.00056205	621.9004442619971	105.28	0.42126	105.28	105.06	105.48	0					31	10	4	0	0	0	1.0898	1	13497	13497		14.137	1.9304	1	1795800	+		18937	31485	13264	13290	21376	21376					0.1747569215031035
GFKHIPDED	9	Unmodified	_GFKHIPDED_					0	0	0		nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2;ENST00000461074.1_1_3:183097083-183118277:-|nuORF	nc|ENSG00000053524|Q86YR7-2|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2804565429688	2	529.251089	1056.48762	-0.96884	-0.00051276	-3.0414	-0.0016097	-4.0103	-0.0021224	529.2503732751911	69.174	0.50581	68.913	68.706	69.211	-0.26166					18	11	3	0	0	0	0.024397	1	8002	8002		47.657	13.485	1	72881			18938	1161	13265	13291	21377	21377					-0.03836010833151704
GFKLDIKKN	9	Unmodified	_GFKLDIKKN_					0	0	0		ENST00000461225.5_1_17:37235749-37309234:-|nuORF;ENST00000578517.5_1_17:37235696-37309234:-|nuORF	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167724609375	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.70156	1	10798	10798		45.972	3.4978	1	5249700			18939	14679	13266	13292	21378	21378					0.09498308748334239
GFKLVMASL	9	Unmodified	_GFKLVMASL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2787170410156	2	483.278063	964.541574	-0.51301	-0.00024793	2.2402	0.0010826	1.7272	0.00083471	483.2792227885441	94.336	1.9734	94.198	93.181	95.155	-0.13779					109	45	5	0	0	0	0.96906	1	11620	11620		26.693	3.6504	1	1254500			18940	2169	13267	13293	21379	21379					0.05788490064855978
GFKNKLYVAVV	11	Unmodified	_GFKNKLYVAVV_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.372802734375	2	619.368798	1236.72304	0.41006	0.00025398	2.8289	0.0017521	3.2389	0.0020061	619.3705610213385	100.17	0.77786	100.03	99.755	100.53	-0.13364					55	22	3	0	0	0	1.0651	1	12472	12472		20.947	1.8434	1	1373000			18941	9566	13268	13294	21380	21380					0.11415126362248884
GFKNKTVL	8	Unmodified	_GFKNKTVL_					0	0	0		ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.7740173339844	2	453.774003	905.533452	-0.24364	-0.00011056	0.45888	0.00020823	0.21524	9.7669E-05	453.77403782532303	29.973	0.72232	29.729	29.441	30.163	-0.24415					43	16	4	0	0	0	0.50239	1	1885	1885		85.359	8.5128	1	707970			18942	8145	13269	13295	21381	21381					0.076906791397505
GFKNKTVL	8	Unmodified	_GFKNKTVL_					0	0	0		ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.7742919921875	2	453.774003	905.533452	-0.80811	-0.0003667	1.1209	0.00050864	0.3128	0.00014194	453.77430195636765	29.847	0.8049	29.674	29.365	30.17	-0.17258					43	18	4	0	0	0	0.6248	1	1860	1860		73.975	18.471	1	634130			18943	8145	13269	13295	21382	21382					0.076906791397505
GFKNKTVL	8	Unmodified	_GFKNKTVL_					0	0	0		ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.7744140625	2	453.774003	905.533452	-0.10319	-4.6826E-05	0.24175	0.0001097	0.13856	6.2875E-05	453.773933392695	29.889	0.84278	29.74	29.501	30.344	-0.14952					48	19	4	0	0	0	0.87148	2	1848	1848;1860		53.351	7.3995	1	642400			18944	8145	13269	13295	21383;21384	21383					0.076906791397505
GFKPGKEFF	9	Unmodified	_GFKPGKEFF_					0	0	0		ENSG00000085662|ENST00000285930|AKR1B1;ENST00000489022.5_1_7:134133851-134143844:-|nuORF;ENST00000484592.5_1_7:134134339-134143844:-|nuORF;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENSG00000085662|ENST00000285930|AKR1B1	ENSG00000085662|ENST00000285930|AKR1B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3159790039062	2	528.779285	1055.54402	-0.86507	-0.00045743	3.2806	0.0017347	2.4155	0.0012773	528.7811158735371	66.63	0.3692	66.406	66.145	66.514	-0.22374					20	9	3	0	0	0	0.024466	1	7652	7652		39.253	13.803	1	421330			18945	1796	13270	13296	21385	21385					0.01846661794161264
GFKRFSFL	8	Unmodified	_GFKRFSFL_					0	0	0		ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2822265625	2	501.281995	1000.54944	0.10703	5.3651E-05	2.4629	0.0012346	2.5699	0.0012883	501.2831912392816	46.396	0.5668	46.299	46.152	46.719	-0.096649					35	15	4	0	0	0	1.0338	1	4471	4471		31.955	1.6371	1	1768300			18946	16979	13271	13297	21386	21386					0.049183853766635366
GFKTWLET	8	Unmodified	_GFKTWLET_					0	0	0		ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant;ENSG00000177932|ENST00000315475|ZNF354C	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2431640625	2	491.255643	980.496732	-0.38016	-0.00018676	3.7758	0.0018549	3.3956	0.0016681	491.25752348749074	37.446	0.50269	37.253	36.927	37.43	-0.193					23	12	3	0	0	0	0.027866	1	3032	3032		23.042	0	1	452400			18947	8776	13272	13298	21387	21387					0.0057038252319898675
GFLFNLFCN	9	Unmodified	_GFLFNLFCN_					0	0	0			REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|84|2|anti-sense	REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|84|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7955322265625	2	537.757495	1073.50044	0.1558	8.3783E-05	0.74394	0.00040006	0.89974	0.00048384	538.2575098793518	88.542	0.59841	88.515	88.303	88.901	-0.027664					22	13	3	0	0	0	0.024487	1	11104	11104		24.203	4.8428	1	71388	+		18948	36250	13273	13299	21388	21388					-0.03337270974589046
GFLISCPLL	9	Carbamidomethyl (C)	_GFLISC(Carbamidomethyl (C))PLL_	GFLISC(1)PLL		GFLISC(71)PLL		0	1	0			REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF	REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2835998535156	2	510.283346	1018.55214	0.7945	0.00040542	-2.1138	-0.0010786	-1.3193	-0.0006732	510.28221132871454	97.656	0.97428	97.52	97.014	97.988	-0.1367					45	22	3	0	0	0	0.33184	2	12053	12053;12112		71.378	8.3995	1	276110	+		18949	33970	13274	13300	21389;21390	21389	447				0.04360472719304198
GFLKIDTASL	10	Unmodified	_GFLKIDTASL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;ENST00000585230.1_1_17:27014435-27015237:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.8007202148438	2	532.802957	1063.59136	-0.68956	-0.0003674	-0.17565	-9.3588E-05	-0.86521	-0.00046099	532.8027073009848	43.719	0.63294	43.614	43.363	43.996	-0.10468					44	16	4	0	0	0	0.98754	1	4040	4040		47.657	0	1	1571700			18950	2963	13275	13301	21391	21391					0.06210896274501465
GFLLDKRT	8	Unmodified	_GFLLDKRT_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.2791442871094	2	475.276909	948.539266	4.405	0.0020936	-0.89127	-0.0004236	3.5138	0.00167	475.2763938913493	16.323	0.24923	16.323	16.211	16.461	0					15	9	2	0	0	0	1.0574	1	60	60		19.36	0	1	71271	+		18951	26783	13276	13302	21392	21392					0.06293777651421806
GFLLDKRT	8	Unmodified	_GFLLDKRT_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	475.276909	948.539266	4.405	0.0020936	-0.89127	-0.0004236	3.5138	0.00167	475.2763938913493	16.323	0.24923	16.323	16.211	16.461	0	0.052589	-0.0013502	NaN	19.36	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71271	+		18952	26783	13276	13302							0.06293777651421806
GFLLDKRT	8	Unmodified	_GFLLDKRT_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	475.276909	948.539266	0.95705	0.00045486	2.393	0.0011374	3.3501	0.0015922	475.2779341742927	16.366	0.17191	16.218	16.085	16.257	-0.14753	-0.052589	0.0017717	NaN	19.36	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26436	+		18953	26783	13276	13302							0.06293777651421806
GFLLEATTSL	10	Unmodified	_GFLLEATTSL_					0	0	0		PLCE1|p.S469F|1|0.07|ENSG00000138193|chr10:94132373-94132373|C/T|missense_variant	PLCE1|p.S469F|1|0.07|ENSG00000138193|chr10:94132373-94132373|C/T|missense_variant	PLCE1|p.S469F|1|0.07|ENSG00000138193|chr10:94132373-94132373|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2875366210938	2	526.28714	1050.55973	-0.15426	-8.1187E-05	-0.44472	-0.00023405	-0.59898	-0.00031524	526.2868555242968	82.311	2.3512	82.337	81.982	84.333	0.025711					111	54	4	0	0	0	0.44576	1	10230	10230		94.006	11.256	1	6861700			18954	18972	13277	13303	21393	21393					0.03646903520575506
GFLLIALFP	9	Unmodified	_GFLLIALFP_					0	0	0		ENST00000451264.1_1_7:26412153-26416171:-|nuORF	ENST00000451264.1_1_7:26412153-26416171:-|nuORF	ENST00000451264.1_1_7:26412153-26416171:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7919616699219	2	495.804771	989.59499	0.1459	7.2339E-05	2.8445	0.0014103	2.9904	0.0014827	495.8061499300666	90.036	1.1313	89.898	89.532	90.663	-0.13825					74	26	4	0	0	0	0.80342	1	11026	11026		39.021	1.8624	1	779110			18955	14519	13278	13304	21394	21394					0.09977610839041517
GFLLLLLFGY	10	Unmodified	_GFLLLLLFGY_					0	0	0		ENSG00000102104|ENST00000379984|RS1	ENSG00000102104|ENST00000379984|RS1	ENSG00000102104|ENST00000379984|RS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.3057250976562	2	578.344261	1154.67397	-0.24813	-0.00014351	-4.0453	-0.0023396	-4.2934	-0.0024831	578.8443643057869	75.836	0.22696	75.661	75.507	75.734	-0.17548					8	5	2	0	0	0	0.03519	1	8960	8960		12.959	0	1	85107			18956	2381	13279	13305	21395	21395					0.10281838073342442
GFLLLVPGVY	10	Unmodified	_GFLLLVPGVY_					0	0	0		ENST00000545682.5_1_11:67232087-67232680:-|nuORF;nc|ENSG00000172663|Q9H6X4-2|TMEM134;ENSG00000172663|ENST00000308022|TMEM134	ENST00000545682.5_1_11:67232087-67232680:-|nuORF	ENST00000545682.5_1_11:67232087-67232680:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.3214721679688	2	539.320786	1076.62702	-0.51023	-0.00027518	2.4785	0.0013367	1.9682	0.0010615	539.3219142008079	103.87	0.69396	103.7	103.32	104.02	-0.16791					26	16	2	0	0	0	1.1309	1	12918	12918		26.796	2.5934	1	97227			18957	8294	13280	13306	21396	21396					0.09176978522191348
GFLLLVPGVY	10	Unmodified	_GFLLLVPGVY_					0	0	0		ENST00000545682.5_1_11:67232087-67232680:-|nuORF;nc|ENSG00000172663|Q9H6X4-2|TMEM134;ENSG00000172663|ENST00000308022|TMEM134	ENST00000545682.5_1_11:67232087-67232680:-|nuORF	ENST00000545682.5_1_11:67232087-67232680:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.320786	1076.62702	-0.65374	-0.00035258	3.1615	0.001705	2.5077	0.0013525	539.3220207596937	103.81	0.42361	103.68	103.49	103.91	-0.12927	-0.010137	0.00042945	NaN	26.796	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91854			18958	8294	13280	13306							0.09176978522191348
GFLLPKGTP	9	Unmodified	_GFLLPKGTP_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2642822265625	2	465.276378	928.538203	0.47635	0.00022164	2.6916	0.0012524	3.168	0.001474	465.27780477938836	58.078	0.28299	58.17	58.05	58.333	0.091217					9	7	2	0	0	0	0.024466	1	6512	6512		25.45	0	1	190160			18959	1500	13281	13307	21397	21397					0.07107563282522733
GFLLYEAVQ	9	Unmodified	_GFLLYEAVQ_					0	0	0		ENSG00000104154|ENST00000261867|SLC30A4	ENSG00000104154|ENST00000261867|SLC30A4	ENSG00000104154|ENST00000261867|SLC30A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.3268432617188	2	520.276575	1038.5386	-0.73767	-0.00038379	2.769	0.0014407	2.0314	0.0010569	520.277971653601	68.776	0.49329	68.776	68.444	68.938	0					18	12	2	0	0	0	0.023239	1	8220	8220		74.255	0	1	131650			18960	2549	13282	13308	21398	21398					0.020869382117098212
GFLPIAKTD	9	Unmodified	_GFLPIAKTD_					0	0	0			REV__ENSG00000162482|ENST00000361640|AKR7A3	REV__ENSG00000162482|ENST00000361640|AKR7A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.8011779785156	2	481.271293	960.528032	0.095793	4.6102E-05	0.35046	0.00016867	0.44625	0.00021477	481.27136741285864	94.787	0.65224	94.79	94.391	95.043	0.0022736					21	14	2	0	0	0	0.024323	1	12037	12037		53.351	16.192	1	53421	+		18961	25446	13283	13309	21399	21399					0.04618955557270965
GFLPKRFRVSF	11	Unmodified	_GFLPKRFRVSF_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9329833984375	3	451.931185	1352.77173	0.96808	0.00043751	2.4334	0.0010998	3.4015	0.0015373	451.9321669232396	97.087	2.2013	96.951	95.725	97.926	-0.1367					165	50	4	0	0	0	1.0563	1	12009	12009		23.378	0.81632	1	596220	+		18962	25109	13284	13310	21400	21400					0.10945039722014371
GFLPKRFRVSF	11	Unmodified	_GFLPKRFRVSF_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9329833984375	3	451.931185	1352.77173	1.0325	0.00046661	2.2377	0.0010113	3.2702	0.0014779	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0327	1	12208	12208		29.551	3.4874	1	1299700	+		18963	25109	13284	13310	21401	21401					0.10945039722014371
GFLPRAPSL	9	Unmodified	_GFLPRAPSL_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2779541015625	2	479.279452	956.544351	0.21198	0.0001016	-4.0742	-0.0019527	-3.8622	-0.0018511	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.89441	1	10294	10294		32.812	2.4947	1	4888300	+		18964	26487	13285	13311	21402	21402					0.0643408151404401
GFLPRAPSL	9	Unmodified	_GFLPRAPSL_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2779235839844	2	479.279452	956.544351	0.51465	0.00024666	-4.4703	-0.0021425	-3.9557	-0.0018959	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.56934	1	10273	10273		54.776	5.3348	1	4752300	+		18965	26487	13285	13311	21403	21403					0.0643408151404401
GFLPVLLFV	9	Unmodified	_GFLPVLLFV_					0	0	0			REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.8139953613281	2	502.812596	1003.61064	-0.30262	-0.00015216	2.2596	0.0011362	1.957	0.000984	502.8138186792779	96.134	1.9926	96.134	95.735	97.727	0					171	45	6	0	0	0	0.93795	1	12323	12323		29.842	6.7991	1	20832000	+		18966	31248	13286	13312	21404	21404					0.10897897356085195
GFLPVLLFV	9	Unmodified	_GFLPVLLFV_					0	0	0			REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.81378173828125	2	502.812596	1003.61064	0.45345	0.000228	1.5551	0.00078192	2.0085	0.0010099	502.8134358247894	96.092	3.0449	96.098	95.307	98.352	0.0065079					205	70	6	0	0	0	0.80342	3	12244	12244;12257;12276		39.021	9.18	1	17656000	+		18967	31248	13286	13312	21405;21406;21407	21405					0.10897897356085195
GFLPVLLFV	9	Unmodified	_GFLPVLLFV_					0	0	0			REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.8138122558594	2	502.812596	1003.61064	0.95576	0.00048057	0.96832	0.00048688	1.9241	0.00096745	502.8131940383032	96.131	1.8999	96.133	95.739	97.639	0.0020676					149	43	5	0	0	0	0.65391	3	12253	12210;12222;12253		49.211	19.369	1	20046000	+		18968	31248	13286	13312	21408;21409;21410	21410					0.10897897356085195
GFLPVLLFV	9	Unmodified	_GFLPVLLFV_					0	0	0			REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.8133239746094	2	502.812596	1003.61064	0.44787	0.00022519	1.6937	0.00085163	2.1416	0.0010768	502.8135488206677	96.216	2.0121	96.08	95.682	97.694	-0.13671					136	45	5	0	0	0	0.99355	1	11963	11963		21.702	3.3779	1	16921000	+		18969	31248	13286	13312	21411	21411					0.10897897356085195
GFLPVLLFV	9	Unmodified	_GFLPVLLFV_					0	0	0			REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.8139343261719	2	502.812596	1003.61064	0.69855	0.00035124	1.4917	0.00075004	2.1902	0.0011013	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	0.93795	1	11932	11932		29.842	8.1392	1	14776000	+		18970	31248	13286	13312	21412	21412					0.10897897356085195
GFLPVLLFV	9	Unmodified	_GFLPVLLFV_					0	0	0			REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	REV__ENST00000373264.4_1_9:130552005-130552332:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.8135070800781	2	502.812596	1003.61064	-0.52334	-0.00026314	2.4708	0.0012424	1.9475	0.00097923	502.8139776910766	96.308	1.7928	96.151	95.794	97.587	-0.15646					121	40	5	0	0	0	0.93795	2	11942	11942;11962		29.842	8.1392	1	13743000	+		18971	31248	13286	13312	21413;21414	21413					0.10897897356085195
GFLQSLLDS	9	Unmodified	_GFLQSLLDS_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.258544921875	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.77768	1	13461	13461		40.778	3.6191	1	7056700	+		18972	28866	13287	13313	21415	21415					0.012100613150096251
GFLQSLLDS	9	Unmodified	_GFLQSLLDS_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2579650878906	2	490.258382	978.502212	-0.68729	-0.00033695	-0.25279	-0.00012393	-0.94008	-0.00046088	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	0.87448	1	13137	13137		34.173	5.9183	1	5001000	+		18973	28866	13287	13313	21416	21416					0.012100613150096251
GFLSEIWPI	9	Unmodified	_GFLSEIWPI_					0	0	0		ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.28564453125	2	531.286943	1060.55933	0.276	0.00014664	-3.5921	-0.0019085	-3.3161	-0.0017618	531.2848872331314	80.001	0.66799	79.755	79.447	80.115	-0.2465					34	15	3	0	0	0	0.4855	1	9569	9569		60.294	2.4827	1	628540			18974	8898	13288	13314	21417	21417					0.031475285913757034
GFLSRISGLL	10	Unmodified	_GFLSRISGLL_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8168334960938	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.83673	1	10785	10785		58.23	0	1	4521600			18975	2513	13289	13315	21418	21418					0.09498308748334239
GFLTKGATN	9	Unmodified	_GFLTKGATN_					0	0	0			REV__nc|ENSG00000089597|Q14697-2|GANAB	REV__nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.74493408203125	2	454.745442	907.476331	0.6119	0.00027826	-1.9362	-0.0008805	-1.3243	-0.00060224	454.74447025012137	101.61	1.8033	101.48	100.73	102.53	-0.13157					101	41	4	0	0	0	0.87448	1	12641	12641		34.173	3.6689	1	2784600	+		18976	20856	13290	13316	21419	21419					0.01889211863374385
GFLTKGATN	9	Unmodified	_GFLTKGATN_					0	0	0			REV__nc|ENSG00000089597|Q14697-2|GANAB	REV__nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7455139160156	2	454.745442	907.476331	0.2342	0.0001065	-1.5466	-0.00070332	-1.3124	-0.00059682	454.744657043267	101.69	1.5633	101.56	100.98	102.54	-0.12576					94	37	4	0	0	0	0.91321	1	12685	12685		31.53	3.6476	1	2405200	+		18977	20856	13290	13316	21420	21420					0.01889211863374385
GFLTKGATN	9	Unmodified	_GFLTKGATN_					0	0	0			REV__nc|ENSG00000089597|Q14697-2|GANAB	REV__nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.7447509765625	2	454.745442	907.476331	0.21748	9.8897E-05	-1.5936	-0.00072467	-1.3761	-0.00062577	454.7446096091311	101.75	1.4478	101.58	101.05	102.5	-0.17178					89	33	4	0	0	0	0.72494	2	12666	12623;12666		44.377	3.6345	1	2298900	+		18978	20856	13290	13316	21421;21422	21422					0.01889211863374385
GFLVPCMYG	9	Carbamidomethyl (C),Oxidation (M)	_GFLVPC(Carbamidomethyl (C))M(Oxidation (M))YG_	GFLVPC(1)MYG	GFLVPCM(1)YG	GFLVPC(60)MYG	GFLVPCM(60)YG	0	1	1			REV__TMEM38A|p.I244M|1|0.11|ENSG00000072954|chr19:16688203-16688203|C/G|missense_variant	REV__TMEM38A|p.I244M|1|0.11|ENSG00000072954|chr19:16688203-16688203|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2343139648438	2	530.235538	1058.45652	-0.79747	-0.00042285	-0.44699	-0.00023701	-1.2445	-0.00065986	530.2350518335647	67.224	0.93177	67	66.714	67.646	-0.22374					63	22	4	0	0	0	0.48384	1	7777	7777		60.404	12.746	1	7708400	+		18979	37710	13291	13317	21423	21423	489	989			-0.0703662346325018
GFLVRQIED	9	Unmodified	_GFLVRQIED_					0	0	0			REV__NDST4|p.G265E|1|0.42|ENSG00000138653|chr4:115076243-115076243|C/T|missense_variant	REV__NDST4|p.G265E|1|0.42|ENSG00000138653|chr4:115076243-115076243|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.8267822265625	2	538.790381	1075.56621	-0.037577	-2.0246E-05	-0.095596	-5.1506E-05	-0.13317	-7.1752E-05	538.7909272722601	54.852	0.54523	54.646	54.431	54.976	-0.20613					30	14	3	0	0	0	0.024412	1	5861	5861		50.025	26.982	1	510880	+		18980	37270	13292	13318	21424	21424					0.031448414719761786
GFLWVLCPTV	10	Unmodified	_GFLWVLCPTV_					0	0	0		ENSG00000181499|ENST00000321252|OR6T1;OR6T1|p.D191Tfs*5|1|0.22|ENSG00000181499|chr11:123943268-123943268|C/-|frameshift_variant	ENSG00000181499|ENST00000321252|OR6T1	ENSG00000181499|ENST00000321252|OR6T1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.804445	1133.59434	-0.036199	-2.0554E-05	2.9902	0.0016978	2.954	0.0016773	567.8058430466697	93.518	0.60892	93.374	93.133	93.742	-0.1441					20	13	2	0	0	0	0.03519	1	11468	11468		34.173	0	1	102190			18981	9047	13293	13319	21425	21425					0.03288448127659649
GFNIFTLYK	9	Unmodified	_GFNIFTLYK_					0	0	0		nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2586059570312	2	551.800217	1101.58588	0.21962	0.00012118	-4.4178	-0.0024377	-4.1982	-0.0023165	551.7976981986625	63.806	0.91331	63.548	63.122	64.035	-0.25824					38	23	2	0	0	0	0.024323	1	7241	7241		53.351	19.43	1	1189900			18982	9780	13294	13320	21426	21426					0.03915217482699518
GFNRKSTL	8	Unmodified	_GFNRKSTL_					0	0	0		nc|ENSG00000125846|P52736-3|ZNF133;nc|ENSG00000125846|P52736-4|ZNF133;nc|ENSG00000125846|P52736-2|ZNF133;ENSG00000125846|ENST00000425686|ZNF133;nc|ENSG00000125846|P52736-5|ZNF133	nc|ENSG00000125846|P52736-3|ZNF133	nc|ENSG00000125846|P52736-3|ZNF133	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7559814453125	2	461.758884	921.503215	0.9129	0.00042154	-0.79098	-0.00036524	0.12192	5.63E-05	461.7586075431839	40.749	0.39061	40.626	40.407	40.797	-0.12317					11	10	2	0	0	0	0.027866	1	3587	3587		68.485	20.569	1	151460			18983	4151	13295	13321	21427	21427					0.0393232047457559
GFNVNHMD	8	Unmodified	_GFNVNHMD_					0	0	0		SLC17A8|p.L439M|1|0.26|ENSG00000179520|chr12:100418046-100418046|C/A|missense_variant	SLC17A8|p.L439M|1|0.26|ENSG00000179520|chr12:100418046-100418046|C/A|missense_variant	SLC17A8|p.L439M|1|0.26|ENSG00000179520|chr12:100418046-100418046|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.23846435546875	2	467.197802	932.381051	-1.1601	-0.00054201	2.404	0.0011231	1.2438	0.00058111	467.19892811382914	29.059	0.83392	29.059	28.613	29.447	0					26	20	2	0	0	0	0.027866	1	1781	1781		50.025	24.574	1	78077			18984	37879	13296	13322	21428	21428					-0.08784464599318653
GFNWKELLK	9	Unmodified	_GFNWKELLK_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.277587890625	2	567.818941	1133.62333	0.18437	0.00010469	-2.4123	-0.0013698	-2.228	-0.0012651	568.3192378823355	75.549	0.47569	75.373	75.071	75.547	-0.17548					26	11	4	0	0	0	0.024495	1	8904	8904		34.173	11.13	1	152210			18985	3450	13297	13323	21429	21429					0.06186308748328884
GFPGSRIS	8	Unmodified	_GFPGSRIS_					0	0	0			REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF	REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.7187194824219	2	410.719227	819.423902	1.0893	0.0004474	-2.1056	-0.00086482	-1.0163	-0.00041743	410.7182657977767	95.455	1.742	95.459	94.878	96.62	0.0041122					98	40	4	0	0	0	1.0574	1	12116	12116		21.96	1.4781	1	2791300	+		18986	31897	13298	13324	21430	21430					0.00696673520440072
GFPGSRIS	8	Unmodified	_GFPGSRIS_					0	0	0			REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF	REV__ENST00000404155.1_1_6:3177457-3179994:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.7189025878906	2	410.719227	819.423902	-0.18606	-7.6417E-05	-0.79238	-0.00032545	-0.97844	-0.00040186	410.7188202086517	96.155	1.7784	95.999	95.4	97.178	-0.15646					90	40	4	0	0	0	1.0574	1	11889	11889		23.042	3.6825	1	1136900	+		18987	31897	13298	13324	21431	21431					0.00696673520440072
GFPLDTVII	9	Unmodified	_GFPLDTVII_					0	0	0			REV__ENSG00000134077|ENST00000452837|THUMPD3	REV__ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.27874755859375	2	487.781493	973.548434	-0.046907	-2.2881E-05	4.0745	0.0019875	4.0276	0.0019646	487.7833459389743	91.37	2.7798	91.381	90.279	93.059	0.011276					101	66	2	0	0	0	0.024535	1	11366	11366		25.45	1.2474	1	275320	+		18988	23419	13299	13325	21432	21432					0.06060126217084871
GFPLRAPSI	9	Unmodified	_GFPLRAPSI_					0	0	0			REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.27728271484375	2	479.279452	956.544351	0.21198	0.0001016	-4.0742	-0.0019527	-3.8622	-0.0018511	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.72875	2	10560	10340;10560		44.117	0	1	4888300	+		18989	30254	13300	13326	21433;21434	21434					0.0643408151404401
GFPLRAPSI	9	Unmodified	_GFPLRAPSI_					0	0	0			REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	479.27777099609375	2	479.279452	956.544351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.143	1	86.143	85.643	86.643	0								0	0	0	0.5792	1	10818	10818		42.396	0	1		+		18990	30254	13300	13326	21435	21435					0.0643408151404401
GFPLRAPSI	9	Unmodified	_GFPLRAPSI_					0	0	0			REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.28033447265625	2	479.279452	956.544351	1.8949	0.0009082	-1.4057	-0.00067373	0.48921	0.00023447	479.27863663895505	59.176	1.1292	58.989	58.538	59.667	-0.18705					88	30	4	0	0	0	0.31037	1	6685	6685		74.255	2.9593	1	7579700	+		18991	30254	13300	13326	21436	21436					0.0643408151404401
GFPLRAPSI	9	Unmodified	_GFPLRAPSI_					0	0	0			REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	REV__ENST00000315150.9_1_3:128808380-128808617:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2776794433594	2	479.279452	956.544351	-0.56358	-0.00027011	-3.3047	-0.0015839	-3.8683	-0.001854	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.50848	2	10378	10378;10476		58.782	0	1	4947400	+		18992	30254	13300	13326	21437;21438	21437					0.0643408151404401
GFPLRLLN	8	Unmodified	_GFPLRLLN_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.28033447265625	2	465.281995	928.549437	-0.049393	-2.2982E-05	-3.9759	-0.0018499	-4.0253	-0.0018729	465.27991717882145	87.975	1.3184	87.838	87.459	88.777	-0.13744					91	31	5	0	0	0	1.0572	1	10714	10714		28.254	1.4582	1	1523900	+		18993	25289	13301	13327	21439	21439					0.08230385376657523
GFPQRERW	8	Unmodified	_GFPQRERW_					0	0	0			REV__nc|ENSG00000290699|Q9H0H9|CYP4F30P	REV__nc|ENSG00000290699|Q9H0H9|CYP4F30P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2462768554688	2	538.275232	1074.53591	-1.2774	-0.0006876	-4.2469	-0.002286	-5.5243	-0.0029736	538.773648480169	35.228	0.50385	35.041	34.911	35.415	-0.18675					18	12	3	0	0	0	0.027866	1	2699	2699		42.474	28.337	1	96814	+		18994	37232	13302	13328	21440	21440					0.001625275973992757
GFPRILGQA	9	Unmodified	_GFPRILGQA_					0	0	0		AK4|p.T93I|1|0.19|ENSG00000162433|chr1:65218766-65218766|C/T|missense_variant	AK4|p.T93I|1|0.19|ENSG00000162433|chr1:65218766-65218766|C/T|missense_variant	AK4|p.T93I|1|0.19|ENSG00000162433|chr1:65218766-65218766|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.77685546875	2	479.777077	957.5396	0.59286	0.00028444	1.6986	0.00081494	2.2914	0.0010994	479.7779077586707	86.005	1.7104	85.809	85.301	87.012	-0.19508					88	39	3	0	0	0	0.40179	1	10437	10437		65.803	2.8247	1	554990			18995	55	13303	13329	21441	21441					0.05913197371273782
GFPRRKMKL	9	Unmodified	_GFPRRKMKL_					0	0	0		ENST00000369535.4_1_1:115249837-115249885:-|nuORF	ENST00000369535.4_1_1:115249837-115249885:-|nuORF	ENST00000369535.4_1_1:115249837-115249885:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3137817382812	2	566.842228	1131.6699	-0.35569	-0.00020162	-3.8922	-0.0022063	-4.2479	-0.0024079	566.8398193421465	67.497	0.55161	67.259	67.078	67.629	-0.23814					23	12	3	0	0	0	0.024457	1	7787	7787		29.15	8.2026	1	293970			18996	12925	13304	13330	21442	21442					0.10933470098621001
GFPRTVSL	8	Unmodified	_GFPRTVSL_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.7508239746094	2	438.750527	875.486502	0.038772	1.7011E-05	0.48023	0.0002107	0.519	0.00022771	438.7506216698449	52.252	0.58526	52.252	52.049	52.634	0					35	14	3	0	0	0	0.50717	1	5597	5597		84.916	0	1	1595600	+		18997	21394	13305	13331	21443	21443					0.04377819588614784
GFQAMPLRPH	10	Unmodified	_GFQAMPLRPH_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	577.2924194335938	2	577.300393	1152.58623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.338	1	99.17	98.67	99.67	-0.16862								0	0	0	0.7491	1	12300	12300		42.396	5.237	1		+		18998	23218	13306	13332	21444	21444					0.016043139308976606
GFQKKKDT	8	Unmodified	_GFQKKKDT_					0	0	0			REV__ENSG00000155097|ENST00000518738|ATP6V1C1	REV__ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.271240234375	2	476.266542	950.51853	-0.502	-0.00023909	0.57205	0.00027245	0.070053	3.3364E-05	476.26688084610026	80.371	0.42426	80.392	80.146	80.57	0.021439					17	9	2	0	0	0	0.027866	1	9876	9876		8.2313	0	1	78337	+		18999	24993	13307	13333	21445	21445					0.04129187271757928
GFQKKKDT	8	Unmodified	_GFQKKKDT_					0	0	0			REV__ENSG00000155097|ENST00000518738|ATP6V1C1	REV__ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.266542	950.51853	0.45948	0.00021883	-0.66751	-0.00031791	-0.20803	-9.908E-05	476.26584697448936	80.295	0.46369	80.295	80.163	80.626	0	-0.04882	-0.00082498	NaN	40.573	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61901	+		19000	24993	13307	13333							0.04129187271757928
GFQLIMELYED	11	Unmodified	_GFQLIMELYED_					0	0	0			REV__ENSG00000151572|ENST00000392977|ANO4	REV__ENSG00000151572|ENST00000392977|ANO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.2179260253906	3	453.216328	1356.62715	0.37349	0.00016927	2.4519	0.0011112	2.8254	0.0012805	453.2174593362966	59.478	0.75991	59.23	58.888	59.648	-0.24841					63	18	6	0	0	0	0.94699	1	6558	6558		48.602	1.3739	1	2299600	+		19001	24778	13308	13334	21446	21446					-0.036894343307949384
GFQNWKPG	8	Unmodified	_GFQNWKPG_					0	0	0		ENSG00000132514|ENST00000416562|CLEC10A;nc|ENSG00000132514|Q8IUN9-2|CLEC10A;nc|ENSG00000132514|Q8IUN9|CLEC10A	ENSG00000132514|ENST00000416562|CLEC10A	ENSG00000132514|ENST00000416562|CLEC10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.2334289550781	2	467.232502	932.450451	-0.16518	-7.7176E-05	2.6898	0.0012567	2.5246	0.0011796	467.23338580236407	67.852	0.94255	67.614	67.245	68.187	-0.23814					45	22	4	0	0	0	0.71717	1	7808	7808		65.897	2.919	1	804820			19002	4614	13309	13335	21447	21447					-0.018476375882414686
GFQTQQGPA	9	Unmodified	_GFQTQQGPA_					0	0	0		SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.23663330078125	2	467.224874	932.435195	-0.34684	-0.00016205	1.1879	0.00055503	0.84109	0.00039298	467.2253196069718	28.89	0.45735	28.893	28.672	29.129	0.0031376					17	10	2	0	0	0	0.024325	1	1701	1701		40.573	7.057	1	132700			19003	37964	13310	13336	21448	21448					-0.033725491761060766
GFQTQQGPA	9	Unmodified	_GFQTQQGPA_					0	0	0		SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	467.224874	932.435195	-1.2323	-0.00057578	1.444	0.00067468	0.21166	9.8894E-05	467.22531860976204	28.928	0.69344	28.683	28.406	29.099	-0.24524	-0.061149	0.00051027	NaN	31.955	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422780			19004	37964	13310	13336							-0.033725491761060766
GFQTQQGPA	9	Unmodified	_GFQTQQGPA_					0	0	0		SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	467.224874	932.435195	-0.38931	-0.00018189	0.26883	0.0001256	-0.12048	-5.6291E-05	467.2248261852828	28.778	0.82233	28.609	28.337	29.16	-0.16897	-0.1352	-0.00058787	NaN	31.955	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337270			19005	37964	13310	13336							-0.033725491761060766
GFQTQQGPA	9	Unmodified	_GFQTQQGPA_					0	0	0		SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	467.224874	932.435195	-0.68797	-0.00032144	0.61912	0.00028927	-0.068849	-3.2168E-05	467.22497411956033	28.732	0.61957	28.58	28.162	28.782	-0.15195	-0.16387	-0.00026054	NaN	31.955	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266040			19006	37964	13310	13336							-0.033725491761060766
GFRKHLGLL	9	Unmodified	_GFRKHLGLL_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;nc|ENSG00000183520|Q9Y3A2-2|UTP11;ENST00000486563.1_1_1:38478474-38482093:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2739868164062	2	520.821818	1039.62908	-0.34321	-0.00017875	-1.1734	-0.00061111	-1.5166	-0.00078986	520.8208736842779	90.83	0.62897	90.814	90.361	90.99	-0.015579					19	14	2	0	0	0	0.024466	1	11455	11455		42.474	4.6629	1	71553			19007	9239	13311	13337	21449	21449					0.11085452050656386
GFRLLRSPP	9	Unmodified	_GFRLLRSPP_					0	0	0		ENST00000491721.1_1_2:200776161-200820135:+|nuORF;ENSG00000178074|ENST00000319974|C2orf69	ENST00000491721.1_1_2:200776161-200820135:+|nuORF	ENST00000491721.1_1_2:200776161-200820135:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7929077148438	2	521.811451	1041.60835	-1.0837	-0.00056547	3.346	0.001746	2.2623	0.0011805	521.8130504168929	44.893	0.75838	44.744	44.39	45.148	-0.1488					38	21	2	0	0	0	0.024344	1	4347	4347		45.972	10.772	1	457860			19008	15468	13312	13338	21450	21450					0.0892086167098114
GFRLLRSPP	9	Unmodified	_GFRLLRSPP_					0	0	0		ENST00000491721.1_1_2:200776161-200820135:+|nuORF;ENSG00000178074|ENST00000319974|C2orf69	ENST00000491721.1_1_2:200776161-200820135:+|nuORF	ENST00000491721.1_1_2:200776161-200820135:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.811451	1041.60835	-0.26547	-0.00013852	2.7061	0.0014121	2.4406	0.0012736	521.8127176269077	45.008	0.35402	44.755	44.59	44.944	-0.25252	-0.036643	-0.00043971	NaN	45.972	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77039			19009	15468	13312	13338							0.0892086167098114
GFRRTISRL	9	Unmodified	_GFRRTISRL_					0	0	0		ENSG00000127870|ENST00000381588|RNF6;nc|ENSG00000127870|Q9Y252-2|RNF6	ENSG00000127870|ENST00000381588|RNF6	ENSG00000127870|ENST00000381588|RNF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.3316650390625	2	553.333082	1104.65161	-0.4027	-0.00022283	-0.84059	-0.00046513	-1.2433	-0.00068795	553.332456575769	95.559	1.4151	95.408	95.012	96.427	-0.15186					99	32	5	0	0	0	0.93097	1	11785	11785		30.318	6.795	1	3966700			19010	4263	13313	13339	21451	21451					0.10347051448275124
GFRRTTPPTT	10	Unmodified	_GFRRTTPPTT_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3300170898438	2	567.306729	1132.59891	-0.43469	-0.0002466	1.9082	0.0010825	1.4735	0.00083593	567.3078477794508	88.787	0.25317	88.617	88.546	88.799	-0.17054					6	5	2	0	0	0	0.03519	1	10843	10843		26.693	10.22	1	62106			19011	3442	13314	13340	21452	21452					0.03791048594780477
GFSAPSQLLN	10	Unmodified	_GFSAPSQLLN_					0	0	0		ENST00000261177.9_1_12:31145010-31145274:+|nuORF	ENST00000261177.9_1_12:31145010-31145274:+|nuORF	ENST00000261177.9_1_12:31145010-31145274:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2680053710938	2	517.269281	1032.52401	-1.0749	-0.00055602	2.9856	0.0015444	1.9107	0.00098836	517.2706814517236	28.443	1.0719	28.198	27.593	28.665	-0.24524					52	25	3	0	0	0	0.57594	1	1651	1651		79.713	8.8964	1	2173900			19012	11459	13315	13341	21453	21453					0.00904866063569898
GFSAPSQLLN	10	Unmodified	_GFSAPSQLLN_					0	0	0		ENST00000261177.9_1_12:31145010-31145274:+|nuORF	ENST00000261177.9_1_12:31145010-31145274:+|nuORF	ENST00000261177.9_1_12:31145010-31145274:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2686767578125	2	517.269281	1032.52401	-0.33559	-0.00017359	1.2155	0.00062874	0.8799	0.00045515	517.2699524708165	28.212	0.87427	28.06	27.61	28.484	-0.15195					69	21	4	0	0	0	0.80817	1	1602	1602		60.118	1.3363	1	1847600			19013	11459	13315	13341	21454	21454					0.00904866063569898
GFSCKVYY	8	Carbamidomethyl (C)	_GFSC(Carbamidomethyl (C))KVYY_	GFSC(1)KVYY		GFSC(60)KVYY		0	1	0		ENSG00000171722|ENST00000367935|SPATA46	ENSG00000171722|ENST00000367935|SPATA46	ENSG00000171722|ENST00000367935|SPATA46	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2362060546875	2	512.233853	1022.45315	0.016275	8.3365E-06	2.2004	0.0011271	2.2167	0.0011355	512.2349931681874	57.601	0.677	57.41	57.112	57.789	-0.19018					49	17	4	0	0	0	0.78609	1	6319	6319		60.294	12.378	1	3535000			19014	8186	13316	13342	21455	21455	99				-0.05717550245606162
GFSCKVYY	8	Carbamidomethyl (C)	_GFSC(Carbamidomethyl (C))KVYY_	GFSC(1)KVYY		GFSC(56)KVYY		0	1	0		ENSG00000171722|ENST00000367935|SPATA46	ENSG00000171722|ENST00000367935|SPATA46	ENSG00000171722|ENST00000367935|SPATA46	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2356567382812	2	512.233853	1022.45315	-0.63756	-0.00032658	2.8642	0.0014671	2.2266	0.0011405	512.2353058066367	57.638	0.72484	57.405	57.129	57.854	-0.23363					45	18	4	0	0	0	0.845	1	6301	6301		55.504	9.5523	1	3670800			19015	8186	13316	13342	21456	21456	99				-0.05717550245606162
GFSDGFGQNI	10	Unmodified	_GFSDGFGQNI_					0	0	0			REV__USP8-MYEF2|1|fusion	REV__USP8-MYEF2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2423095703125	2	521.235439	1040.45632	-0.72343	-0.00037708	3.158	0.0016461	2.4346	0.001269	521.2368304858827	76.118	0.38207	75.846	75.622	76.004	-0.27266					21	9	3	0	0	0	0.03519	1	8998	8998		29.15	3.6994	1	105880	+		19016	37772	13317	13343	21457	21457					-0.06228583867255111
GFSELLELN	9	Unmodified	_GFSELLELN_					0	0	0			REV__nc|ENSG00000117222|Q15291-2|RBBP5	REV__nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2639465332031	2	511.263665	1020.51278	0.11573	5.9167E-05	-0.3853	-0.00019699	-0.26957	-0.00013782	511.263426838151	81.166	2.8244	80.973	80.561	83.385	-0.19333					137	66	4	0	0	0	0.39228	1	9863	9863		66.429	0	1	6885400	+		19017	22333	13318	13344	21458	21458					0.0033404396941705272
GFSKRKLRQ	9	Unmodified	_GFSKRKLRQ_					0	0	0		ENSG00000047648|ENST00000337414|ARHGAP6;nc|ENSG00000047648|O43182-3|ARHGAP6;ENST00000489330.6_1_X:11166772-11683098:-|nuORF;nc|ENSG00000047648|O43182-2|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3385620117188	2	560.340907	1118.66726	-0.071419	-4.0019E-05	-1.3393	-0.00075048	-1.4108	-0.0007905	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	0.67308	1	12685	12685		47.916	7.1374	1	13448000			19018	1109	13319	13345	21459	21459					0.11267337965296065
GFSKSYKLY	9	Unmodified	_GFSKSYKLY_					0	0	0			REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3035278320312	2	546.78985	1091.56515	-0.30056	-0.00016434	-0.58975	-0.00032247	-0.89031	-0.00048681	546.789508971767	37.632	0.68512	37.439	37.076	37.761	-0.193					34	17	3	0	0	0	0.024374	1	3006	3006		49.442	0	1	601210	+		19019	23995	13320	13346	21460	21460					0.023026271030403223
GFSLKTVQGK	10	Unmodified	_GFSLKTVQGK_					0	0	0		nc|ENSG00000215859|A8MUH7-2|PDZK1P1;ENST00000401008.6_1_1:147468098-147482410:-|nuORF;nc|ENSG00000215859|A8MUH7|PDZK1P1;ENST00000425209.1_1_1:147466535-147481815:-|nuORF;ENSG00000174827|ENST00000417171|PDZK1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2553100585938	2	532.808574	1063.60259	-1.6077	-0.0008566	0.21365	0.00011384	-1.3941	-0.00074277	532.8085045370849	40.75	0.35104	40.52	40.308	40.659	-0.23029					13	9	2	0	0	0	0.03519	1	3547	3547		63.534	35.452	1	163320			19020	8501	13321	13347	21461	21461					0.07333718368636255
GFSPHAAIYST	11	Unmodified	_GFSPHAAIYST_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8429565429688	2	575.780013	1149.54547	-0.027893	-1.606E-05	0.31384	0.0001807	0.28595	0.00016464	575.7799357414705	88.004	0.42433	87.869	87.644	88.068	-0.13456					25	10	3	0	0	0	0.024762	1	10753	10753		37.812	0	1	220620			19021	6047	13322	13348	21462	21462					-0.023317489077498976
GFSRTTRLLM	10	Unmodified	_GFSRTTRLLM_					0	0	0		ENST00000370490.1_1_X:144903534-144903729:+|nuORF	ENST00000370490.1_1_X:144903534-144903729:+|nuORF	ENST00000370490.1_1_X:144903534-144903729:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	590.7822875976562	2	591.326608	1180.63866	0.026705	1.5791E-05	1.3342	0.00078894	1.3609	0.00080473	591.3272146316242	84.147	0.26077	83.944	83.82	84.081	-0.20329					8	5	2	0	0	0	0.03519	1	10163	10163		18.262	0	1	26732			19022	12962	13323	13349	21463	21463					0.055568522738667525
GFSWSHRAV	9	Unmodified	_GFSWSHRAV_					0	0	0		ENST00000535402.1_1_12:662343-670614:+|nuORF;ENSG00000139044|ENST00000266383|B4GALNT3	ENST00000535402.1_1_12:662343-670614:+|nuORF	ENST00000535402.1_1_12:662343-670614:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.769775390625	2	523.761958	1045.50936	-0.8269	-0.0004331	-0.39596	-0.00020739	-1.2229	-0.00064049	523.7616213939606	61.111	1.4072	60.935	60.597	62.004	-0.1761					83	34	4	0	0	0	0.6504	1	6848	6848		49.442	1.7842	1	1386500			19023	5295	13324	13350	21464	21464					-0.011571612939178522
GFTHLYTL	8	Unmodified	_GFTHLYTL_					0	0	0		ENSG00000269058|ENST00000269881|CALR3	ENSG00000269058|ENST00000269881|CALR3	ENSG00000269058|ENST00000269881|CALR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.3073425292969	2	476.25036	950.486168	-0.61222	-0.00029157	-3.0743	-0.0014642	-3.6866	-0.0017557	476.24868835324224	43.089	0.54027	42.863	42.521	43.061	-0.22597					24	13	3	0	0	0	0.027866	1	3888	3888		25.45	0	1	114570			19024	10992	13325	13351	21465	21465					0.00894399868752771
GFTIVSPLDI	10	Unmodified	_GFTIVSPLDI_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.8176879882812	2	531.297507	1060.58046	0.12807	6.8045E-05	0.22394	0.00011898	0.35202	0.00018703	531.2972079245055	86.31	0.52407	86.172	85.832	86.356	-0.13734					16	11	2	0	0	0	0.03519	1	10474	10474		27.882	0	1	53948			19025	4513	13326	13352	21466	21466					0.05259493900234702
GFTLKLDTL	9	Unmodified	_GFTLKLDTL_					0	0	0			REV__ENST00000525566.5_2_12:104742385-104742472:+|nuORF	REV__ENST00000525566.5_2_12:104742385-104742472:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7796936035156	2	504.292225	1006.5699	0.35795	0.00018051	-0.74197	-0.00037417	-0.38402	-0.00019366	504.2918723981432	70.987	0.47977	70.772	70.563	71.043	-0.21425					15	10	2	0	0	0	0.024319	1	8299	8299		56.721	9.0637	1	307610	+		19026	34415	13327	13353	21467	21467					0.06687511245786482
GFTNERPPN	9	Unmodified	_GFTNERPPN_					0	0	0			REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.830810546875	2	516.24888	1030.48321	-1.2064	-0.00062279	-1.7776	-0.00091768	-2.984	-0.0015405	516.2478425310776	53.772	0.34125	53.636	53.496	53.837	-0.13617					19	10	2	0	0	0	0.023837	1	5645	5645		64.207	25.401	1	347550	+		19027	32852	13328	13354	21468	21468					-0.030814752560445413
GFTNERPPN	9	Unmodified	_GFTNERPPN_					0	0	0			REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.24888	1030.48321	-0.1829	-9.4422E-05	-1.3202	-0.00068157	-1.5031	-0.00077599	516.2473049037455	53.805	0.81214	53.805	53.509	54.321	0	0.079504	0.001186	NaN	77.318	35	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464510	+		19028	32852	13328	13354							-0.030814752560445413
GFTNERPPN	9	Unmodified	_GFTNERPPN_					0	0	0			REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	REV__ENST00000460580.5_1_1:214488163-214491477:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.24888	1030.48321	-0.30572	-0.00015783	-1.727	-0.00089159	-2.0328	-0.0010494	516.2472290645541	53.926	0.52744	53.779	53.493	54.02	-0.14723	0.053274	0.00076591	NaN	77.318	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422440	+		19029	32852	13328	13354							-0.030814752560445413
GFTQKSHLF	9	Unmodified	_GFTQKSHLF_					0	0	0		nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.781494140625	2	532.779816	1063.54508	-0.22818	-0.00012157	3.0058	0.0016014	2.7776	0.0014798	532.7812954384673	59.632	3.9538	59.456	58.391	62.345	-0.1761					182	99	3	0	0	0	0.35646	1	6626	6626		68.787	4.5796	1	2905500			19030	5934	13329	13355	21469	21469					0.01584876163087756
GFVDQKKKL	9	Unmodified	_GFVDQKKKL_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.815673828125	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.67687	1	10603	10603		47.657	3.2801	1	4521600			19031	8079	13330	13356	21470	21470					0.09498308748334239
GFVGHIITI	9	Unmodified	_GFVGHIITI_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.23565673828125	2	478.781828	955.549102	-0.29103	-0.00013934	-3.9461	-0.0018893	-4.2371	-0.0020286	478.77979403599693	45.314	0.54766	45.166	44.901	45.449	-0.1488					27	15	2	0	0	0	0.024412	1	4359	4359		31.955	8.9124	1	1335700	+		19032	23878	13331	13357	21471	21471					0.06954965656814238
GFVIVAILLT	10	Unmodified	_GFVIVAILLT_					0	0	0			REV__ENST00000540600.5_1_11:113285027-113346393:-|nuORF	REV__ENST00000540600.5_1_11:113285027-113346393:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.30322265625	2	523.336436	1044.65832	0.84108	0.00044017	-1.56	-0.00081642	-0.71895	-0.00037625	523.3354250886957	85.477	0.80534	85.327	85.072	85.877	-0.14967					31	18	3	0	0	0	0.03519	1	10398	10398		30.504	7.4612	1	227110	+		19033	24669	13332	13358	21472	21472					0.13777551556268008
GFVKEKLIF	9	Unmodified	_GFVKEKLIF_					0	0	0			REV__ENST00000269445.10_1_18:46568722-46569127:-|nuORF	REV__ENST00000269445.10_1_18:46568722-46569127:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.826416015625	2	540.826235	1079.63792	-0.80994	-0.00043804	0.494	0.00026717	-0.31594	-0.00017087	540.8263261751827	91.097	1.0884	90.974	90.714	91.802	-0.12341					44	25	3	0	0	0	0.25032	1	11178	11178		82.305	8.05	1	863730	+		19034	29791	13333	13359	21473	21473					0.10128380896458111
GFVKEKLIF	9	Unmodified	_GFVKEKLIF_					0	0	0			REV__ENST00000269445.10_1_18:46568722-46569127:-|nuORF	REV__ENST00000269445.10_1_18:46568722-46569127:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.8251953125	2	540.826235	1079.63792	-0.59281	-0.00032061	0.93637	0.00050642	0.34356	0.00018581	540.8261442175414	91.166	0.96547	91.027	90.784	91.75	-0.13942					68	22	4	0	0	0	0.25032	1	11167	11167		82.305	11.009	1	880310	+		19035	29791	13333	13359	21474	21474					0.10128380896458111
GFVKLVGPASL	11	Unmodified	_GFVKLVGPASL_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-1|RADIL	REV__nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3163452148438	2	544.329142	1086.64373	0.48027	0.00026142	0.44866	0.00024422	0.92893	0.00050564	544.3294481145584	86.014	0.7832	85.865	85.662	86.445	-0.14821					34	17	3	0	0	0	0.024741	1	10485	10485		30.318	0	1	105490	+		19036	25160	13334	13360	21475	21475					0.10387479408132094
GFVNRFTV	8	Unmodified	_GFVNRFTV_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7878112792969	2	470.255977	938.497401	-0.46883	-0.00022047	-3.1527	-0.0014826	-3.6215	-0.0017031	470.25405681195866	23.837	0.82284	23.785	23.436	24.259	-0.052095					40	18	3	0	0	0	0.027866	1	961	961		55.504	31	1	1054800			19037	6997	13335	13361	21476	21476					0.02569221962892243
GFVQEGLKEY	10	Unmodified	_GFVQEGLKEY_					0	0	0			REV__ENSG00000111371|ENST00000398637|SLC38A1	REV__ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2953491210938	2	585.295496	1168.57644	-0.66412	-0.00038871	3.0212	0.0017683	2.3571	0.0013796	585.297045103396	56.319	0.74956	56.162	55.82	56.569	-0.15656					49	18	4	0	0	0	0.56936	1	6104	6104		80.455	7.5754	1	2069900	+		19038	21915	13336	13362	21477	21477					-0.001105955934690428
GFVQEGLKEY	10	Unmodified	_GFVQEGLKEY_					0	0	0			REV__ENSG00000111371|ENST00000398637|SLC38A1	REV__ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.2951049804688	2	585.295496	1168.57644	-0.56044	-0.00032802	2.0228	0.0011839	1.4624	0.00085592	585.2962285611397	56.367	0.58641	56.151	55.881	56.468	-0.21607					34	14	3	0	0	0	0.47897	1	6101	6101		90.601	0.23104	1	2136200	+		19039	21915	13336	13362	21478	21478					-0.001105955934690428
GFVTELAKE	9	Unmodified	_GFVTELAKE_					0	0	0			REV__ENSG00000213516|ENST00000652648|RBMXL1	REV__ENSG00000213516|ENST00000652648|RBMXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.26495361328125	2	497.266207	992.517862	-0.016328	-8.1191E-06	-1.7646	-0.00087748	-1.7809	-0.0008856	497.2653223993636	72.08	1.3127	71.805	71.1	72.412	-0.27509					57	31	3	0	0	0	0.53979	1	8436	8436		56.721	7.2795	1	801040	+		19040	28743	13337	13363	21479	21479					0.021303478320419345
GFVTKQTT	8	Unmodified	_GFVTKQTT_					0	0	0		ENSG00000168646|ENST00000307078|AXIN2	ENSG00000168646|ENST00000307078|AXIN2	ENSG00000168646|ENST00000307078|AXIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.8537292480469	2	441.239993	880.465432	0.010716	4.7283E-06	1.2869	0.00056784	1.2976	0.00057256	441.2399119851567	31.966	1.0216	31.777	31.317	32.339	-0.18922					51	23	3	0	0	0	0.027866	1	2128	2128		40.573	10.069	1	167550			19041	7849	13338	13364	21480	21480					0.02041809489071511
GFYPKPVW	8	Unmodified	_GFYPKPVW_					0	0	0		ENSG00000158488|ENST00000368167|CD1E;nc|ENSG00000158488|P15812-7|CD1E;nc|ENSG00000158488|P15812-2|CD1E;nc|ENSG00000158488|P15812-4|CD1E;nc|ENSG00000158488|P15812-5|CD1E;nc|ENSG00000158488|P15812-6|CD1E;nc|ENSG00000158488|P15812-13|CD1E;nc|ENSG00000158488|P15812-8|CD1E;nc|ENSG00000158488|P15812-9|CD1E;nc|ENSG00000158488|P15812-11|CD1E;nc|ENSG00000158488|P15812-12|CD1E;nc|ENSG00000158485|P29016-2|CD1B;nc|ENSG00000158488|P15812-10|CD1E;nc|ENSG00000158488|P15812-3|CD1E;ENSG00000158477|ENST00000289429|CD1A;ENSG00000158485|ENST00000368168|CD1B;ENSG00000158473|ENST00000674085|CD1D;CD1E|p.S233L|1|0.11|ENSG00000158488|chr1:158355899-158355899|C/T|missense_variant;ENSG00000158481|ENST00000368170|CD1C	ENSG00000158488|ENST00000368167|CD1E;ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2629699707031	2	497.263271	992.511988	-0.96299	-0.00047886	0.13828	6.876E-05	-0.82471	-0.0004101	497.2631239256717	55.892	1.6292	55.735	54.863	56.492	-0.15655					103	43	4	0	0	0	0.9224	1	6043	6043		49.211	1.2952	1	4499600			19042	6675;6677	13339	13365	21481	21481					0.015432941110361753
GFYVCRVNN	9	Unmodified	_GFYVCRVNN_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8004150390625	2	536.255651	1070.49675	-1.0957	-0.00058757	0.93166	0.00049961	-0.16402	-8.7955E-05	536.7582626471907	55.401	0.45274	55.255	55.057	55.509	-0.14609					28	12	3	0	0	0	0.024436	1	5918	5918		38.806	0	1	293530			19043	8251	13340	13366	21482	21482					-0.03567940748462206
GFYVQSPKA	9	Unmodified	_GFYVQSPKA_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7616882324219	2	498.761092	995.507631	0.42535	0.00021215	0.18291	9.1226E-05	0.60825	0.00030337	498.7610943725598	16.65	0.70108	16.502	16.378	17.079	-0.14753					33	24	2	0	0	0	0.98697	1	73	73		23.042	0	1	169270	+		19044	19410	13341	13367	21483	21483					0.009697848974724366
GGAEPGCG	8	Unmodified	_GGAEPGCG_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	647.8125	1	647.245351	646.238075	-0.61929	-0.00040083	2.5268	0.0016354	1.9075	0.0012346	647.2466925655779	62.884	0.91875	62.626	62.541	63.46	-0.25824					29	24	2	0	0	0	0.027866	1	7095	7095		37.028	0	1	430180	+		19045	26806	13342	13368	21484	21484					-0.09919471990542661
GGAGAGVT	8	Unmodified	_GGAGAGVT_					0	0	0		ENST00000544040.5_1_12:6715495-6716565:-|nuORF;ENSG00000180613|ENST00000326902|GSX2	ENST00000544040.5_1_12:6715495-6716565:-|nuORF	ENST00000544040.5_1_12:6715495-6716565:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.3433227539062	1	589.294016	588.28674	-1.5275	-0.00090016	0.87581	0.00051611	-0.65172	-0.00038405	589.2931683498147	92.933	0.17114	92.933	92.838	93.009	0					5	3	2	0	0	0	0.027866	1	11793	11793		21.702	7.0382	1	14692			19046	16474	13343	13369	21485	21485					-0.023872353591514184
GGAGAVLRAPA	11	Unmodified	_GGAGAVLRAPA_					0	0	0		ENST00000418833.2_1_1:1334931-1335123:+|nuORF;ENST00000444362.2_1_1:1334931-1335667:+|nuORF;ENST00000448629.5_1_1:1334931-1336111:+|nuORF	ENST00000418833.2_1_1:1334931-1335123:+|nuORF	ENST00000418833.2_1_1:1334931-1335123:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7820739746094	2	470.272158	938.529764	0.22844	0.00010743	-2.3208	-0.0010914	-2.0923	-0.00098396	470.2706861144705	44.466	0.7219	44.503	43.959	44.681	0.0369					27	20	2	0	0	0	0.024793	1	4105	4105		56.721	5.3856	1	231210			19047	13943	13344	13370	21486	21486					0.058040093658974
GGAGIQQVSP	10	Unmodified	_GGAGIQQVSP_					0	0	0			REV__nc|ENSG00000134574|Q92466-4|DDB2	REV__nc|ENSG00000134574|Q92466-4|DDB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2589111328125	2	457.240524	912.466495	-0.41864	-0.00019142	1.8725	0.00085617	1.4538	0.00066475	457.2402907496368	28.253	0.68729	28.253	27.884	28.571	0					34	16	3	0	0	0	0.03519	1	1641	1641		93.195	7.836	1	155290	+		19048	36679	13345	13371	21487	21487					0.0067602385800000775
GGAPQSLRK	9	Unmodified	_GGAPQSLRK_					0	0	0			REV__nc|ENSG00000085978|Q676U5-4|ATG16L1	REV__nc|ENSG00000085978|Q676U5-4|ATG16L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2640075683594	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.80003	1	9993	9993		39.253	1.4413	1	2903100	+		19049	20761	13346	13372	21488	21488					0.054357228488470355
GGAPSPAHL	9	Unmodified	_GGAPSPAHL_					0	0	0		chr17:41438313-41438491|119|21.61|0.7|4.94|-|2|KRT38,KRT38|1	chr17:41438313-41438491|119|21.61|0.7|4.94|-|2|KRT38,KRT38|1	chr17:41438313-41438491|119|21.61|0.7|4.94|-|2|KRT38,KRT38|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.2273254394531	2	403.711402	805.408252	0.50463	0.00020372	0.60319	0.00024352	1.1078	0.00044724	403.7114721082265	25.156	1.0977	25.156	24.429	25.527	0					31	25	2	0	0	0	0.024535	1	1128	1128		25.45	16.628	1	205350			19050	355	13347	13373	21489	21489					-0.0022361299662634337
GGAPSPAHL	9	Unmodified	_GGAPSPAHL_					0	0	0		chr17:41438313-41438491|119|21.61|0.7|4.94|-|2|KRT38,KRT38|1	chr17:41438313-41438491|119|21.61|0.7|4.94|-|2|KRT38,KRT38|1	chr17:41438313-41438491|119|21.61|0.7|4.94|-|2|KRT38,KRT38|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	403.711402	805.408252	2.3615	0.00095336	-1.3618	-0.00054978	0.99969	0.00040359	403.7107054049605	25.086	0.50227	25.166	24.916	25.418	0.08009	-0.01069	-0.00095932	NaN	18.324	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188870			19051	355	13347	13373							-0.0022361299662634337
GGARQRRLL	9	Unmodified	_GGARQRRLL_					0	0	0			REV__ENSG00000141034|ENST00000268719|GID4	REV__ENSG00000141034|ENST00000268719|GID4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2942504882812	2	513.817599	1025.62064	0.12303	6.3213E-05	-3.3993	-0.0017466	-3.2763	-0.0016834	514.3192302163899	86.836	0.38011	86.836	86.561	86.941	0					11	8	2	0	0	0	0.024436	1	10890	10890		23.042	0	1	74643	+		19052	24061	13348	13374	21490	21490					0.10885898134029048
GGATGVSQEGR	11	Unmodified	_GGATGVSQEGR_					0	0	0			REV__ENST00000488946.1_1_19:49993730-49993925:+|nuORF	REV__ENST00000488946.1_1_19:49993730-49993925:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7494201660156	2	509.749244	1017.48394	-1.4361	-0.00073206	2.1861	0.0011144	0.74999	0.00038231	509.7502386520185	30.159	0.7793	30.159	29.855	30.634	0					41	18	3	0	0	0	0.79111	2	1917	1917;1929		58.23	3.5076	1	1472400	+		19053	33659	13349	13375	21491;21492	21491					-0.02410680606999449
GGATGVSQEGR	11	Unmodified	_GGATGVSQEGR_					0	0	0			REV__ENST00000488946.1_1_19:49993730-49993925:+|nuORF	REV__ENST00000488946.1_1_19:49993730-49993925:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7492370605469	2	509.749244	1017.48394	-0.66017	-0.00033652	1.2977	0.00066152	0.63757	0.000325	509.74988788184965	30.095	0.86729	30.104	29.839	30.706	0.0086708					58	20	5	0	0	0	0.67171	2	1889	1889;1901		65.465	9.0316	1	1525200	+		19054	33659	13349	13375	21493;21494	21493					-0.02410680606999449
GGATQKQGT	9	Unmodified	_GGATQKQGT_					0	0	0			REV__ENST00000420557.2_1_6:170195286-170195361:+|nuORF	REV__ENST00000420557.2_1_6:170195286-170195361:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.2195739746094	2	424.217049	846.419545	-0.039211	-1.6634E-05	3.6907	0.0015657	3.6515	0.001549	424.2185373562743	94.954	1.5536	94.817	94.213	95.766	-0.13779					61	35	2	0	0	0	0.70156	1	11753	11753		45.972	0.020292	1	355630	+		19055	32167	13350	13376	21495	21495					-0.009808356931443996
GGATVCSAPSR	11	Unmodified	_GGATVCSAPSR_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75384521484375	2	503.242741	1004.47093	-0.92576	-0.00046588	0.67594	0.00034016	-0.24982	-0.00012572	503.2427792381874	28.418	1.3856	28.418	27.726	29.112	0					57	33	4	0	0	0	0.024787	1	1737	1737		49.536	0	1	141320			19056	8798	13351	13377	21496	21496					-0.031128349907362463
GGDGRARL	8	Unmodified	_GGDGRARL_					0	0	0			REV__ENST00000396946.8_1_7:2998153-3083527:-|nuORF	REV__ENST00000396946.8_1_7:2998153-3083527:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	2	401.219926	800.425299	1.6116	0.00064661	-1.6968	-0.00068077	-0.085133	-3.4157E-05	401.219053686266	21.962	0.29057	22.033	21.879	22.17	0.071487					6	5	2	0	0	0	0.027866	1	676	676		45.952	5.3793	1	12106	+		19057	31752	13352	13378	21497	21497					0.017103076091871117
GGDTAQIII	9	Unmodified	_GGDTAQIII_					0	0	0			REV__ENSG00000120328|ENST00000239450|PCDHB12;REV__ENSG00000197479|ENST00000354757|PCDHB11	REV__ENSG00000120328|ENST00000239450|PCDHB12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.77130126953125	2	444.245275	886.475997	-0.086435	-3.8399E-05	0.15053	6.6873E-05	0.064095	2.8474E-05	444.245279267761	32.372	1.0219	32.214	31.904	32.926	-0.15772					35	24	2	0	0	0	0.021513	1	2224	2224		71.877	0	1	104340	+		19058	22526;28308	13353	13379	21498	21498					0.028217921435384596
GGEGLETAPK	10	Unmodified	_GGEGLETAPK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.74609375	2	479.745639	957.476725	0.033502	1.6072E-05	0.023013	1.104E-05	0.056515	2.7113E-05	479.7455549147041	52.792	0.83825	52.884	52.602	53.44	0.091938					48	22	4	0	0	0	0.72729	1	5605	5605		65.465	3.358	1	2124800			19059	1051	13354	13380	21499	21499					-0.00371413207437854
GGEGLLCPAAP	11	Unmodified	_GGEGLLCPAAP_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|37|3|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|37|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.728515625	2	492.744585	983.474617	0.51187	0.00025222	-3.8543	-0.0018992	-3.3425	-0.001647	492.74248729131966	63.605	0.43898	63.346	63.162	63.601	-0.25824					20	11	2	0	0	0	0.024759	1	7176	7176		34.173	15.91	1	281060			19060	38029	13355	13381	21500	21500					-0.017781652169105655
GGEGLLCPAAP	11	Unmodified	_GGEGLLCPAAP_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|37|3|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|37|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.744585	983.474617	0.029865	1.4716E-05	-3.5284	-0.0017386	-3.4986	-0.0017239	492.7427193333132	63.237	0.79809	63.237	62.938	63.736	0	-0.0433	0.00021362	NaN	31.53	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2149100			19061	38029	13355	13381							-0.017781652169105655
GGEGLLCPAAP	11	Unmodified	_GGEGLLCPAAP_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|37|3|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|37|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|5|1|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.744585	983.474617	0.04706	2.3188E-05	-3.4054	-0.001678	-3.3583	-0.0016548	492.7427879408472	63.448	0.83731	63.196	62.893	63.73	-0.25141	-0.083788	0.0003349	NaN	31.53	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1911600			19062	38029	13355	13381							-0.017781652169105655
GGEHPAEQEG	10	Unmodified	_GGEHPAEQEG_					0	0	0			REV__ENSG00000163545|ENST00000367157|NUAK2	REV__ENSG00000163545|ENST00000367157|NUAK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.71417236328125	2	505.712328	1009.4101	-0.33266	-0.00016823	4.0043	0.002025	3.6716	0.0018568	505.71433724954466	31.485	3.9418	31.3	29.477	33.419	-0.18503					250	95	4	0	0	0	1.0616	1	2100	2100		37.812	2.1932	1	1825100	+		19063	25590	13356	13382	21501	21501					-0.0942264876932768
GGEKVQHVK	9	Unmodified	_GGEKVQHVK_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000598529.5_1_19:8616563-8619410:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7940368652344	2	491.277441	980.540328	-1.092	-0.00053648	3.7295	0.0018322	2.6375	0.0012958	491.2788732279288	29.243	0.74974	29.243	28.862	29.611	0					33	18	3	0	0	0	0.02435	1	1736	1736		51.335	0	1	929680			19064	5555	13357	13383	21502	21502					0.04927992020327565
GGENGPVLEV	10	Unmodified	_GGENGPVLEV_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3118591308594	2	485.745639	969.476725	-1.0946	-0.00053168	0.70168	0.00034084	-0.39288	-0.00019084	485.74616705562704	43.77	0.50819	43.77	43.548	44.056	0					17	13	2	0	0	0	0.03519	1	4166	4166		51.193	7.0759	1	132290			19065	5711	13358	13384	21503	21503					-0.00923413207442536
GGENVKVSGTV	11	Unmodified	_GGENVKVSGTV_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.7792358398438	2	523.77747	1045.54039	0.44087	0.00023092	3.2329	0.0016933	3.6738	0.0019242	523.7790393340343	78.526	1.485	78.334	77.604	79.089	-0.19211					88	35	3	0	0	0	0.044845	1	9642	9642		123.21	6.3045	1	1940700			19066	37917	13359	13385	21504	21504					0.019439472296653548
GGENVKVSGTV	11	Unmodified	_GGENVKVSGTV_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.77747	1045.54039	-0.256	-0.00013409	4.389	0.0022989	4.133	0.0021648	523.7796012649675	78.586	0.51584	78.331	78.041	78.557	-0.25471	0.015937	0.00046921	NaN	123.21	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621340			19067	37917	13359	13385							0.019439472296653548
GGENVKVSGTV	11	Unmodified	_GGENVKVSGTV_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.77747	1045.54039	0.30921	0.00016196	3.9169	0.0020516	4.2262	0.0022136	523.7793202253595	78.561	0.38483	78.329	78.091	78.476	-0.23141	0.014424	-2.5321E-05	NaN	123.21	24	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650270			19068	37917	13359	13385							0.019439472296653548
GGENVKVSGTV	11	Unmodified	_GGENVKVSGTV_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.77747	1045.54039	0.13242	6.9357E-05	4.5574	0.0023871	4.6898	0.0024564	523.7796255766607	78.502	0.6442	78.346	77.957	78.601	-0.15592	0.031308	0.00064558	NaN	123.21	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712560			19069	37917	13359	13385							0.019439472296653548
GGFGTLCPPAH	11	Unmodified	_GGFGTLCPPAH_					0	0	0			REV__SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|31|3|sense	REV__SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|31|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.74853515625	2	528.750201	1055.48585	0.46157	0.00024405	-4.0387	-0.0021354	-3.5771	-0.0018914	528.7478381280127	84.986	3.1781	84.827	84.02	87.198	-0.15869					155	74	4	0	0	0	0.9749	1	10278	10278		42.396	0	1	2044000	+		19070	37654	13360	13386	21505	21505					-0.03967343122758393
GGFGTLCPPAH	11	Unmodified	_GGFGTLCPPAH_					0	0	0			REV__SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|31|3|sense	REV__SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|31|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.748779296875	2	528.750201	1055.48585	0.51812	0.00027396	-4.0558	-0.0021445	-3.5377	-0.0018706	528.7478249114087	84.976	3.36	84.838	83.845	87.205	-0.13752					151	78	4	0	0	0	0.95124	1	10299	10299		47.657	3.2801	1	1831100	+		19071	37654	13360	13386	21506	21506					-0.03967343122758393
GGGAAGSA	8	Unmodified	_GGGAAGSA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.8206176757812	1	547.247066	546.239789	-0.25072	-0.0001372	-1.2532	-0.00068582	-1.5039	-0.00082302	547.2476906752314	64.462	0.27612	64.26	64.144	64.42	-0.20254					9	6	2	0	0	0	0.027866	1	7340	7340		8.2313	0	1	30389	+		19072	26001;24267	13361	13387	21507	21507					-0.05148094910293821
GGGAGAAA	8	Unmodified	_GGGAGAAA_					0	0	0		ENSG00000170549|ENST00000302006|IRX1	REV__ENSG00000206113|ENST00000635017|CFAP99;ENSG00000170549|ENST00000302006|IRX1	ENSG00000170549|ENST00000302006|IRX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.8165283203125	1	531.252151	530.244875	0.1571	8.3458E-05	1.5168	0.00080582	1.6739	0.00088928	531.2507811218019	85.946	0.38551	85.809	85.577	85.962	-0.13734					13	8	3	0	0	0	0.027866	1	10390	10390		10.185	0	1	37383			19073	28701;8054	13362	13388	21508	21508					-0.039037910476736215
GGGAGAVS	8	Unmodified	_GGGAGAVS_					0	0	0		nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25	nc|ENSG00000148339|Q6KCM7-4|SLC25A25	nc|ENSG00000148339|Q6KCM7-4|SLC25A25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.84326171875	1	575.278366	574.271089	-0.93607	-0.0005385	0.83668	0.00048133	-0.099389	-5.7176E-05	575.282030264892	90.525	0.2513	90.4	90.208	90.459	-0.12513					7	5	2	0	0	0	0.027866	1	11098	11098		14.664	5.8418	1	18386			19074	18369	13363	13389	21509	21509					-0.03307521876183728
GGGAGAWTPGP	11	Unmodified	_GGGAGAWTPGP_					0	0	0		chr19:50982457-50982980|158|10.86|0.11|6.63|-|0|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982980,50983661|KLK7,None|4;chr19:50982457-50982834|158|10.94|0.11|6.63|-|1|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982834,50983661|KLK7,None|4;chr19:50982457-50982797|196|10.02|0.14|6.14|-|0|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982797,50983661|KLK7,None|4	chr19:50982457-50982980|158|10.86|0.11|6.63|-|0|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982980,50983661|KLK7,None|4	chr19:50982457-50982980|158|10.86|0.11|6.63|-|0|TE_info:MSR1,MSR1_dup226,Satellite,Satellite,donor,+,50982980,50983661|KLK7,None|4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2328796386719	2	464.219591	926.42463	0.23384	0.00010855	3.503	0.0016262	3.7369	0.0017347	464.22113840638434	53.624	0.77897	53.72	53.407	54.186	0.095669					46	21	3	0	0	0	0.024776	1	5736	5736		32.812	0	1	1693400			19075	363	13364	13390	21510	21510					-0.041525318305275505
GGGALLRSPLP	11	Unmodified	_GGGALLRSPLP_					0	0	0			REV__ENST00000547685.5_1_12:56230822-56232389:-|nuORF	REV__ENST00000547685.5_1_12:56230822-56232389:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7796020507812	2	519.308741	1036.60293	-0.71983	-0.00037382	0.33306	0.00017296	-0.38678	-0.00020086	519.3087391568862	51.87	0.40467	51.723	51.406	51.811	-0.14735					21	11	3	0	0	0	0.024798	1	5481	5481		39.253	4.1008	1	466590	+		19076	34867	13365	13391	21511	21511					0.08609138088513646
GGGEAVTEIIK	11	Unmodified	_GGGEAVTEIIK_					0	0	0			REV__nc|ENSG00000144848|Q9NT62-2|ATG3	REV__nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2982788085938	2	537.295496	1072.57644	-1.3285	-0.00071381	0.87015	0.00046753	-0.45838	-0.00024628	537.2959198698738	56.095	0.85803	56.193	55.894	56.752	0.097893					44	18	3	0	0	0	0.55321	1	6193	6193		72.879	5.3856	1	7906800	+		19077	24368	13366	13392	21512	21512					0.04305404406500202
GGGGAKGG	8	Unmodified	_GGGGAKGG_					0	0	0			REV__ENST00000374825.8_1_6:32936454-32936616:+|nuORF	REV__ENST00000374825.8_1_6:32936454-32936616:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.8035278320312	1	560.2787	559.271424	-1.0251	-0.00057432	-1.8063	-0.001012	-2.8314	-0.0015864	560.2739456882174	62.024	0.21161	62.024	61.868	62.08	0					7	5	2	0	0	0	0.027866	1	7198	7198		9.4706	4.3837	1	64297	+		19078	31310	13367	13393	21513	21513					-0.02584102156345125
GGGGGGGD	8	Unmodified	_GGGGGGGD_					0	0	0		ENST00000299633.6_1_15:83876364-83876475:-|nuORF;nc|ENSG00000011114|Q9P203-5|BTBD7;ENSG00000120093|ENST00000498678|HOXB3;ENSG00000138795|ENST00000265165|LEF1;nc|ENSG00000138795|Q9UJU2-6|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;ENSG00000169857|ENST00000306730|AVEN;nc|ENSG00000120093|P14651-2|HOXB3;nc|ENSG00000138795|Q9UJU2-2|LEF1;nc|ENSG00000120093|P14651-3|HOXB3;nc|ENSG00000286219|P0DPK4|NOTCH2NLC;HOXB3|p.S185Rfs*35|1|0.32|ENSG00000120093|chr17:48551078-48551078|C/-|frameshift_variant;ENST00000403734.2_1_11:62494359-62494803:-|nuORF;ENST00000362074.7_1_1:145209278-145248834:+|nuORF;ENST00000256646.6_1_1:120572588-120612105:-|nuORF;ENST00000470900.1_1_3:51422898-51423054:+|nuORF;ENST00000479412.2_1_1:120611949-120612105:-|nuORF;ENSG00000206418|ENST00000649141|RAB12	REV__ENSG00000170265|ENST00000610704|ZNF282;REV__nc|ENSG00000144406|Q8N2C7-4|UNC80;REV__HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;REV__ENSG00000121871|ENST00000475390|SLITRK3;ENSG00000206418|ENST00000649141|RAB12;REV__nc|ENSG00000166912|Q9NXD2-2|MTMR10;REV__ENSG00000181588|ENST00000402693|MEX3D;REV__ENSG00000184156|ENST00000388996|KCNQ3	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.78466796875	1	533.19503	532.187754	-0.99709	-0.00053164	-1.2705	-0.00067741	-2.2676	-0.0012091	533.1938426150375	45.711	0.19908	45.559	45.412	45.611	-0.15156					9	5	2	0	0	0	0.027866	1	4441	4441		8.8223	0	1	305030			19079	24332;27411;26450;22612;10469;27639;25773;26079	13368	13394	21514	21514					-0.09705258324038368
GGGGGGKK	8	Unmodified	_GGGGGGKK_					0	0	0		nc|ENSG00000292354|O15266-2|SHOX;ENSG00000185960|ENST00000686671|SHOX;nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B	nc|ENSG00000292354|O15266-2|SHOX	nc|ENSG00000292354|O15266-2|SHOX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	618.3047485351562	1	617.33655	616.329273	-0.032241	-1.9904E-05	1.7668	0.0010907	1.7346	0.0010708	617.3377601618677	83.442	0.67792	83.304	82.91	83.588	-0.1386					18	15	2	0	0	0	0.027866	1	10070	10070		4.3163	2.8514	1	97853			19080	2722	13369	13395	21515	21515					0.00576159769093465
GGGGGSGP	8	Unmodified	_GGGGGSGP_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12;ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2824096679688	1	545.231416	544.224139	0.16765	9.1408E-05	-2.5411	-0.0013855	-2.3734	-0.0012941	545.2326708401459	51.026	0.22636	50.75	50.627	50.853	-0.27643					7	5	2	0	0	0	0.027866	1	5205	5205		1.619	0	1	133820			19081	8830	13370	13396	21516	21516					-0.06620381427330813
GGGGGVGA	8	Unmodified	_GGGGGVGA_					0	0	0		ENSG00000181588|ENST00000402693|MEX3D;nc|ENSG00000181588|Q86XN8-2|MEX3D;nc|ENSG00000181588|Q86XN8-3|MEX3D	REV__ENST00000483405.5_2_16:29916187-29917348:+|nuORF	REV__ENST00000483405.5_2_16:29916187-29917348:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2904052734375	1	531.252151	530.244875	-0.41276	-0.00021928	2.0735	0.0011015	1.6607	0.00088226	531.2500494482688	55.4	0.2308	55.184	55.037	55.268	-0.21551					10	6	2	0	0	0	0.027866	1	5943	5943		0	0	1	158820			19082	9050	13371	13397	21517	21517					-0.03903791047662253
GGGGPAGP	8	Unmodified	_GGGGPAGP_					0	0	0		ENST00000249822.8_1_15:52861129-52861270:-|nuORF	ENST00000249822.8_1_15:52861129-52861270:-|nuORF	ENST00000249822.8_1_15:52861129-52861270:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2835083007812	1	569.267801	568.260525	-0.36245	-0.00020633	-2.8445	-0.0016193	-3.207	-0.0018256	569.2662413638002	81.296	0.49925	81.153	80.9	81.399	-0.14249					14	11	2	0	0	0	0.027866	1	9744	9744		10.185	0	1	153650			19083	11344	13372	13398	21518	21518					-0.04087504530627939
GGGGTSVA	8	Unmodified	_GGGGTSVA_					0	0	0			REV__MINK1-ALOX12|1|fusion	REV__MINK1-ALOX12|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	604.7333984375	1	605.288931	604.281654	-0.26679	-0.00016148	2.9014	0.0017562	2.6346	0.0015947	605.288603855772	85.475	0.21382	85.28	85.088	85.301	-0.19508					5	4	2	0	0	0	0.027866	1	10349	10349		8.8223	0	1	39003	+		19084	21765	13373	13399	21519	21519					-0.036315392217602493
GGGGVGGG	8	Unmodified	_GGGGVGGG_					0	0	0		ENST00000569299.1_1_16:66968069-66968324:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B;ENSG00000168779|ENST00000483851|SHOX2;nc|ENSG00000168779|O60902|SHOX2;nc|ENSG00000168779|O60902-3|SHOX2;ENST00000368218.8_2_1:156698377-156698662:+|nuORF;nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	REV__ENSG00000168779|ENST00000483851|SHOX2;ENST00000368218.8_2_1:156698377-156698662:+|nuORF;nc|ENSG00000113389|P17342-2|NPR3	REV__ENSG00000168779|ENST00000483851|SHOX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7464599609375	1	517.236501	516.229225	-0.031584	-1.6336E-05	-0.42476	-0.0002197	-0.45635	-0.00023604	517.2362853520607	24.322	0.4222	24.147	23.918	24.34	-0.17484					17	9	2	0	0	0	0.027866	1	1015	1015		5.0869	0	1	139520			19085	26291;3290;12884	13374	13400	21520	21520					-0.04824077564705931
GGGGVGGG	8	Unmodified	_GGGGVGGG_					0	0	0		ENST00000569299.1_1_16:66968069-66968324:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B;ENSG00000168779|ENST00000483851|SHOX2;nc|ENSG00000168779|O60902|SHOX2;nc|ENSG00000168779|O60902-3|SHOX2;ENST00000368218.8_2_1:156698377-156698662:+|nuORF;nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	REV__ENSG00000168779|ENST00000483851|SHOX2;ENST00000368218.8_2_1:156698377-156698662:+|nuORF;nc|ENSG00000113389|P17342-2|NPR3	REV__ENSG00000168779|ENST00000483851|SHOX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		1	517.236501	516.229225	-0.26957	-0.00013943	0.043821	2.2666E-05	-0.22575	-0.00011677	517.2364481934917	24.461	0.46215	24.246	24.044	24.506	-0.2151	0.081459	0.00096959	NaN	5.0869	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102270			19086	26291;3290;12884	13374	13400							-0.04824077564705931
GGGGVGGG	8	Unmodified	_GGGGVGGG_					0	0	0		ENST00000569299.1_1_16:66968069-66968324:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B;ENSG00000168779|ENST00000483851|SHOX2;nc|ENSG00000168779|O60902|SHOX2;nc|ENSG00000168779|O60902-3|SHOX2;ENST00000368218.8_2_1:156698377-156698662:+|nuORF;nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	REV__ENSG00000168779|ENST00000483851|SHOX2;ENST00000368218.8_2_1:156698377-156698662:+|nuORF;nc|ENSG00000113389|P17342-2|NPR3	REV__ENSG00000168779|ENST00000483851|SHOX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		1	517.236501	516.229225	2.0827	0.0010772	-2.8131	-0.001455	-0.73038	-0.00037778	517.2350100434427	24.281	0.48106	24.1	23.893	24.374	-0.18089	-0.063974	-0.0005081	NaN	5.0869	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159330			19087	26291;3290;12884	13374	13400							-0.04824077564705931
GGGKPLRTAS	10	Unmodified	_GGGKPLRTAS_					0	0	0			REV__ENST00000410036.2_1_2:132241636-132250313:-|nuORF	REV__ENST00000410036.2_1_2:132241636-132250313:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2878112792969	2	472.269616	942.524678	0.18852	8.9031E-05	2.7463	0.001297	2.9348	0.001386	472.27099266578335	94.205	0.56874	94.205	93.992	94.561	-0.00023651					26	13	3	0	0	0	0.03519	1	11955	11955		49.442	6.9671	1	302060	+		19088	24814	13375	13401	21521	21521					0.05111705503270514
GGGLRRPPAR	10	Unmodified	_GGGLRRPPAR_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.8106079101562	2	518.809774	1035.60499	1.0782	0.00055937	-0.0087816	-4.556E-06	1.0694	0.00055482	518.80965249002	96.763	1.4917	96.64	96.108	97.599	-0.12305					65	33	3	0	0	0	0.96965	1	11968	11968		49.442	1.7842	1	2118600			19089	4339	13376	13402	21522	21522					0.08861611616976006
GGIPPITTRAL	11	Unmodified	_GGIPPITTRAL_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1;nc|ENSG00000164050|O43157-3|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3283081054688	2	548.329673	1094.64479	-0.25643	-0.00014061	-2.5313	-0.001388	-2.7877	-0.0015286	548.3281272097943	18.162	0.54084	18.031	17.811	18.352	-0.13147					25	10	3	0	0	0	1.0392	1	249	249		28.081	3.5623	1	380460			19090	7197	13377	13403	21523	21523					0.10125693777035849
GGIQFTALVLA	11	Unmodified	_GGIQFTALVLA_					0	0	0		ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENST00000533635.5_1_11:6587803-6591461:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3164672851562	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.99553	1	10930	10930		37.812	2.1932	1	3529900			19091	16105	13378	13404	21524	21524					0.08222889028456848
GGIQFTALVLA	11	Unmodified	_GGIQFTALVLA_					0	0	0		ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENST00000533635.5_1_11:6587803-6591461:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.018	1	10597	10597		32.812	1.2826	1	4936700			19092	16105	13378	13404	21525	21525					0.08222889028456848
GGIRPDVR	8	Unmodified	_GGIRPDVR_					0	0	0			REV__nc|ENSG00000134755|Q02487-2|DSC2	REV__nc|ENSG00000134755|Q02487-2|DSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2516784667969	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.043	1	9396	9396		30.504	3.7075	1	1872200	+		19093	23475	13379	13405	21526	21526					0.04839453677379879
GGIVASCSF	9	Unmodified	_GGIVASCSF_					0	0	0		ENST00000310118.8_1_3:184026678-184026801:+|nuORF	ENST00000310118.8_1_3:184026678-184026801:+|nuORF	ENST00000310118.8_1_3:184026678-184026801:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	420.699646	839.384739	2.1564	0.00090719	-0.56674	-0.00023843	1.5896	0.00066876	420.69980317769745	23.851	0.17612	23.665	23.534	23.71	-0.18609					5	3	2	0	0	0	0.024466	1	951	951		25.45	11.675	1	7157.9			19094	12056	13380	13406	21527	21527					-0.04137794825453511
GGIVGMTLPI	10	Unmodified	_GGIVGMTLPI_					0	0	0		nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10	nc|ENSG00000072506|Q99714-2|HSD17B10	nc|ENSG00000072506|Q99714-2|HSD17B10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.277587890625	2	479.275521	956.536489	0.1691	8.1046E-05	3.582	0.0017168	3.7511	0.0017978	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.87795	1	9823	9823		55.504	13.03	1	1990900			19095	1483	13381	13407	21528	21528					0.05648186202256511
GGKACRSTK	9	Unmodified	_GGKACRSTK_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.7816467285156	2	454.242544	906.470534	-0.24272	-0.00011026	4.4304	0.0020125	4.1876	0.0019022	454.2445690201961	41	1.0308	40.773	40.403	41.434	-0.2278					52	26	4	0	0	0	0.024523	1	3679	3679		10.265	0	1	731740	+		19096	27449	13382	13408	21529	21529					0.013557900800492462
GGKKAKEEW	9	Unmodified	_GGKKAKEEW_					0	0	0		nc|ENSG00000099889|O00192-2|ARVCF;ENSG00000099889|ENST00000263207|ARVCF	nc|ENSG00000099889|O00192-2|ARVCF	nc|ENSG00000099889|O00192-2|ARVCF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7467041015625	2	516.777274	1031.53999	-0.75842	-0.00039193	-0.93879	-0.00048515	-1.6972	-0.00087708	516.7771598316015	48.278	0.84465	48.181	47.593	48.438	-0.097553					25	22	2	0	0	0	0.024539	1	4692	4692		14.865	0.72775	1	216960			19097	2093	13383	13409	21530	21530					0.02548572300474916
GGKKNRRIF	9	Unmodified	_GGKKNRRIF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3268432617188	2	538.327799	1074.64105	0.30756	0.00016557	-1.5869	-0.00085427	-1.2793	-0.0006887	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.92825	1	12471	12471		30.504	0	1	21168000			19098	887	13384	13410	21531	21531					0.1067106879381754
GGKKRLEEL	9	Unmodified	_GGKKRLEEL_					0	0	0			REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8028564453125	2	515.306198	1028.59784	-0.059731	-3.078E-05	-4.1865	-0.0021573	-4.2462	-0.0021881	515.3039882084396	59.925	0.56244	59.676	59.495	60.058	-0.24842					30	14	3	0	0	0	0.022587	1	6612	6612		54.776	18.33	1	4478300	+		19099	35672	13385	13411	21532	21532					0.08468834225891442
GGKKVLFC	8	Unmodified	_GGKKVLFC_					0	0	0			REV__ENST00000244745.3_2_6:21596641-21596935:+|nuORF	REV__ENST00000244745.3_2_6:21596641-21596935:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2461242675781	2	426.244024	850.473494	0.4124	0.00017578	4.4485	0.0018962	4.8609	0.0020719	426.2457939199312	86.761	2.0846	86.782	86.157	88.241	0.021263					140	49	6	0	0	0	1.0572	1	10810	10810		28.254	2.8041	1	10449000	+		19100	29467	13386	13412	21533	21533					0.04227665204859932
GGKLKVLASF	10	Unmodified	_GGKLKVLASF_					0	0	0		ENST00000546954.1_1_12:120881818-120881923:-|nuORF	ENST00000546954.1_1_12:120881818-120881923:-|nuORF	ENST00000546954.1_1_12:120881818-120881923:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7641906738281	2	510.316035	1018.61752	-0.88847	-0.0004534	0.63341	0.00032324	-0.25506	-0.00013016	510.3162681797304	25.791	0.34064	25.619	25.449	25.79	-0.17151					12	7	2	0	0	0	0.03519	1	1229	1229		24.519	0	1	51683			19101	16516	13387	13413	21534	21534					0.10895210236662933
GGKVTKTIQTT	11	Unmodified	_GGKVTKTIQTT_					0	0	0			REV__nc|ENSG00000159023|P11171-2|EPB41	REV__nc|ENSG00000159023|P11171-2|EPB41	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3304443359375	2	567.32987	1132.64519	0.34076	0.00019332	-0.47772	-0.00027103	-0.13696	-7.7703E-05	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0017	1	11334	11334		36.447	3.6343	1	4116000	+		19102	25228	13388	13414	21535	21535					0.08417068706239661
GGLAAPGA	8	Unmodified	_GGLAAPGA_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	612.7747192382812	1	613.330402	612.323125	-0.019807	-1.2148E-05	-0.45201	-0.00027723	-0.47182	-0.00028938	613.3296879541106	51.074	0.41522	50.797	50.589	51.004	-0.27643					16	10	2	0	0	0	0.027866	1	5231	5231		5.0869	0	1	190220			19103	1224	13389	13415	21536	21536					0.0014564153756282394
GGLDLLMGLL	10	Unmodified	_GGLDLLMGLL_					0	0	0		ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;nc|ENSG00000140691|Q96C12-3|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.28973388671875	2	501.288628	1000.5627	-0.4045	-0.00020277	3.5212	0.0017652	3.1167	0.0015624	501.2902410582537	98.333	1.0191	98.167	97.834	98.853	-0.1652					56	24	3	0	0	0	1.1166	1	12199	12199		30.504	1.3541	1	1431700			19104	5437	13390	13416	21537	21537					0.06244455373735036
GGLEPRVK	8	Unmodified	_GGLEPRVK_					0	0	0		ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.8705749511719	2	428.255977	854.497401	-0.41716	-0.00017865	0.58186	0.00024919	0.16471	7.0538E-05	428.2560653309233	37.093	1.0446	36.873	36.607	37.651	-0.2195					40	26	3	0	0	0	0.027866	1	2933	2933		29.15	10.825	1	248010			19105	14734	13391	13417	21538	21538					0.0643322196290228
GGLERPKPLL	10	Unmodified	_GGLERPKPLL_					0	0	0			REV__ENST00000459703.5_1_6:36709837-36709960:-|nuORF	REV__ENST00000459703.5_1_6:36709837-36709960:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.332275390625	2	540.332216	1078.64988	-0.5995	-0.00032393	0.27961	0.00015108	-0.31989	-0.00017285	540.3322920966114	67.358	0.8664	67.358	66.926	67.792	0					51	21	3	0	0	0	0.98754	1	8021	8021		47.657	1.6851	1	1763300	+		19106	32827	13392	13418	21539	21539					0.11369997639667417
GGLFLPPE	8	Unmodified	_GGLFLPPE_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692637-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2137145996094	2	415.226354	828.438155	-0.2638	-0.00010954	2.8736	0.0011932	2.6098	0.0010837	415.2275622520628	28.568	0.9535	28.568	28.232	29.186	0					42	22	3	0	0	0	0.027866	1	1753	1753		42.474	7.2737	1	173220			19107	9534	13393	13419	21540	21540					0.017073259487119685
GGLGVTMVH	9	Unmodified	_GGLGVTMVH_					0	0	0		nc|ENSG00000171885|P55087-2|AQP4;ENSG00000171885|ENST00000383168|AQP4	nc|ENSG00000171885|P55087-2|AQP4	nc|ENSG00000171885|P55087-2|AQP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.780029296875	2	435.728738	869.442923	0.31513	0.00013731	0.060215	2.6237E-05	0.37534	0.00016355	435.72854018922453	38.787	0.19801	38.562	38.402	38.6	-0.2257					8	4	2	0	0	0	0.024466	1	3211	3211		42.474	8.9589	1	62003			19108	8216	13394	13420	21541	21541					0.002978868198283635
GGLIRDVR	8	Unmodified	_GGLIRDVR_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.26678466796875	2	443.266876	884.519199	0.62205	0.00027574	-0.51645	-0.00022892	0.10561	4.6812E-05	443.26654390952115	85.887	1.0799	85.737	85.451	86.531	-0.14967					73	24	4	0	0	0	1.0574	1	10438	10438		25.45	1.2474	1	1048700			19109	7335	13395	13421	21542	21542					0.07232026711460549
GGLLCALLTL	10	Unmodified	_GGLLCALLTL_					0	0	0		ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.29302978515625	2	487.291171	972.567789	0.4829	0.00023531	3.4556	0.0016839	3.9385	0.0019192	487.2927555004163	90.011	1.4301	89.872	89.315	90.745	-0.13824					97	33	4	0	0	0	0.91051	1	11012	11012		53.351	5.4358	1	2297800			19110	9746	13396	13422	21543	21543					0.0804075923633718
GGLLLLVYY	9	Unmodified	_GGLLLLVYY_					0	0	0		ENST00000526146.5_1_11:118184333-118186254:+|nuORF;ENST00000531913.1_1_11:118183295-118186254:+|nuORF;ENSG00000198851|ENST00000361763|CD3E	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7928161621094	2	505.799686	1009.58482	-0.63555	-0.00032146	-2.8689	-0.0014511	-3.5045	-0.0017726	505.79798581676437	76.103	1.1036	76.103	75.696	76.799	0					32	27	2	0	0	0	0.024389	1	9326	9326		49.211	0	1	680690			19111	10225	13397	13423	21544	21544					0.08041003113794432
GGLRQKPN	8	Unmodified	_GGLRQKPN_					0	0	0			REV__AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	REV__AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25146484375	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	0.97924	1	9372	9372		40.573	4.9543	1	1872200	+		19112	19100	13398	13424	21545	21545					0.048394536773685104
GGLRRNLAR	9	Unmodified	_GGLRRNLAR_					0	0	0			REV__ENSG00000188263|ENST00000695950|IL17REL	REV__ENSG00000188263|ENST00000695950|IL17REL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7682189941406	2	506.809774	1011.60499	-0.64982	-0.00032934	2.758	0.0013978	2.1082	0.0010685	506.8111720156243	60.832	1.0559	60.832	60.473	61.529	0					76	27	4	0	0	0	0.023817	1	7004	7004		51.335	0	1	3423600	+		19113	28024	13399	13425	21546	21546					0.09965611616974002
GGLSAMILNDL	11	Unmodified	_GGLSAMILNDL_					0	0	0		ENST00000485978.1_1_9:136338979-136343630:-|nuORF;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6	ENST00000485978.1_1_9:136338979-136343630:-|nuORF	ENST00000485978.1_1_9:136338979-136343630:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3027954101562	2	552.291899	1102.56925	0.74072	0.0004091	1.9513	0.0010777	2.692	0.0014868	552.293234816016	97.089	0.94608	96.952	96.568	97.514	-0.13671					38	20	3	0	0	0	0.024727	1	12073	12073		31.53	0	1	147190			19114	6807	13400	13426	21547	21547					0.022063485344460787
GGLVHRVSA	9	Unmodified	_GGLVHRVSA_					0	0	0			REV__ENST00000561232.5_1_15:67813990-67814107:-|nuORF	REV__ENST00000561232.5_1_15:67813990-67814107:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2588806152344	2	448.259051	894.503549	0.35148	0.00015756	-0.50826	-0.00022783	-0.15678	-7.0278E-05	448.2586890631354	89.096	1.4611	89.112	88.623	90.084	0.015907					87	34	4	0	0	0	0.94809	1	11171	11171		29.15	1.2673	1	7395300	+		19115	35168	13401	13427	21548	21548					0.05207740194418875
GGLVHRVSA	9	Unmodified	_GGLVHRVSA_					0	0	0			REV__ENST00000561232.5_1_15:67813990-67814107:-|nuORF	REV__ENST00000561232.5_1_15:67813990-67814107:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2588195800781	2	448.259051	894.503549	-0.45696	-0.00020483	0.23802	0.00010669	-0.21894	-9.814E-05	448.25902243845417	89.198	2.2068	89.035	88.471	90.677	-0.1626					108	52	4	0	0	0	0.94809	1	10868	10868		29.15	3.6994	1	9232100	+		19116	35168	13401	13427	21549	21549					0.05207740194418875
GGLVMLLPE	9	Unmodified	_GGLVMLLPE_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.28021240234375	2	464.762246	927.50994	-0.047674	-2.2157E-05	-3.1844	-0.00148	-3.2321	-0.0015022	464.76046265772715	87.744	0.77289	87.606	87.289	88.062	-0.13734					31	18	2	0	0	0	0.024381	1	10726	10726		21.96	0	1	251810			19117	5890	13402	13428	21550	21550					0.04328497310916646
GGLVRDIR	8	Unmodified	_GGLVRDIR_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	ENSG00000004939|ENST00000262418|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.2665710449219	2	443.266876	884.519199	0.62205	0.00027574	-0.51645	-0.00022892	0.10561	4.6812E-05	443.26654390952115	85.887	1.0799	85.737	85.451	86.531	-0.14967					73	24	4	0	0	0	1.0239	1	10452	10452		33.516	0	1	1048700			19118	752	13403	13429	21551	21551					0.0723202671144918
GGLVRRDL	8	Unmodified	_GGLVRRDL_					0	0	0		ENSG00000205436|ENST00000688303|EXOC3L4	ENSG00000205436|ENST00000688303|EXOC3L4	ENSG00000205436|ENST00000688303|EXOC3L4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2667541503906	2	443.266876	884.519199	0.90859	0.00040275	-0.67228	-0.000298	0.2363	0.00010475	443.2665079712088	85.712	1.1011	85.712	85.372	86.474	0					75	25	4	0	0	0	1.0574	1	10757	10757		26.693	2.4902	1	1179100			19119	10428	13404	13430	21552	21552					0.07232026711460549
GGLVRSVAH	9	Unmodified	_GGLVRSVAH_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2581481933594	2	448.259051	894.503549	0.72777	0.00032623	-0.73156	-0.00032793	-0.003781	-1.6949E-06	448.25875915676653	86.345	1.2334	86.345	85.708	86.941	0					49	28	4	0	0	0	0.88411	1	10860	10860		33.516	1.5607	1	498620			19120	2685	13405	13431	21553	21553					0.05207740194418875
GGLVRSVAH	9	Unmodified	_GGLVRSVAH_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2588806152344	2	448.259051	894.503549	-0.21973	-9.8495E-05	-0.025537	-1.1447E-05	-0.24526	-0.00010994	448.2589085096466	89.199	1.7144	89.071	88.532	90.246	-0.12774					103	40	5	0	0	0	0.92825	1	10888	10888		30.504	1.3541	1	9247200			19121	2685	13405	13431	21554	21554					0.05207740194418875
GGLVVGKNR	9	Unmodified	_GGLVVGKNR_					0	0	0			REV__ENSG00000183044|ENST00000268251|ABAT	REV__ENSG00000183044|ENST00000268251|ABAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2745666503906	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	0.90698	1	11404	11404		31.955	0	1	55183000	+		19122	27529	13406	13432	21555	21555					0.08152313228504227
GGPAGGQRSL	10	Unmodified	_GGPAGGQRSL_					0	0	0		nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1	nc|ENSG00000108352|Q9UHV5|RAPGEFL1	nc|ENSG00000108352|Q9UHV5|RAPGEFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.27447509765625	2	450.238316	898.462078	0.34375	0.00015477	0.62171	0.00027992	0.96545	0.00043468	450.2382832396233	92.281	0.23343	92.29	92.189	92.423	0.0094147					9	5	3	0	0	0	0.03519	1	11638	11638		25.574	8.2091	1	233280			19123	2891	13407	13433	21556	21556					0.00878559435079751
GGPFTAVQIT	10	Unmodified	_GGPFTAVQIT_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7673645019531	2	495.766374	989.518196	0.52353	0.00025955	-0.69856	-0.00034632	-0.17503	-8.6774E-05	495.7660175569914	52.908	0.67392	52.649	52.326	53	-0.25838					37	16	3	0	0	0	1.0545	1	5508	5508		38.754	3.1353	1	756290			19124	9561	13408	13434	21557	21557					0.023017675519099612
GGPILPKKPP	10	Unmodified	_GGPILPKKPP_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7380676269531	2	502.318577	1002.6226	0.068855	3.4587E-05	-0.24196	-0.00012154	-0.1731	-8.6952E-05	502.3185510743931	36.203	0.58887	35.987	35.779	36.368	-0.21661					32	15	3	0	0	0	0.03519	1	2847	2847		29.15	10.825	1	929590			19125	1867	13409	13435	21558	21558					0.12139514099283133
GGPLRLSR	8	Unmodified	_GGPLRLSR_					0	0	0			REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2620849609375	2	428.261594	854.508634	-0.55429	-0.00023738	0.94817	0.00040607	0.39388	0.00016869	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0106	1	11157	11157		35.618	1.4457	1	83817000	+		19126	29267	13410	13436	21559	21559					0.0755604405703707
GGPNAHKWL	9	Unmodified	_GGPNAHKWL_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2580871582031	2	490.259051	978.503549	0.0031706	1.5544E-06	-1.6739	-0.00082063	-1.6707	-0.00081908	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.92825	1	13460	13460		30.504	1.3541	1	6674100	+		19127	25742	13411	13437	21560	21560					0.013437401944315752
GGPNAHKWL	9	Unmodified	_GGPNAHKWL_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2582702636719	2	490.259051	978.503549	-0.31257	-0.00015324	-1.9033	-0.00093309	-2.2158	-0.0010863	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	0.80658	2	13194	13187;13194		38.806	12.01	1	4889800	+		19128	25742	13411	13437	21561;21562	21562					0.013437401944315752
GGPNAHKWL	9	Unmodified	_GGPNAHKWL_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2597351074219	2	490.259051	978.503549	-0.68729	-0.00033695	-1.6168	-0.00079263	-2.3041	-0.0011296	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	0.83071	1	13183	13183		37.159	3.6661	1	5001000	+		19129	25742	13411	13437	21563	21563					0.013437401944315752
GGPNAHKWL	9	Unmodified	_GGPNAHKWL_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.25750732421875	2	490.259051	978.503549	0.70772	0.00034696	-2.6817	-0.0013147	-1.974	-0.00096776	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	0.83071	1	13100	13100		37.159	3.6661	1	4976900	+		19130	25742	13411	13437	21564	21564					0.013437401944315752
GGPPALIRASA	11	Unmodified	_GGPPALIRASA_					0	0	0			REV__ENSG00000157851|ENST00000288699|DPYSL5	REV__ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.291748046875	2	505.293091	1008.57163	0.45051	0.00022764	-3.4282	-0.0017322	-2.9777	-0.0015046	505.2912101133561	96.254	1.7011	96.117	95.767	97.468	-0.1367					76	38	3	0	0	0	1.0292	1	11897	11897		30.318	3.6248	1	931960	+		19131	25153	13412	13438	21565	21565					0.06768565054403552
GGPPAPPPSA	10	Unmodified	_GGPPAPPPSA_					0	0	0			REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.2186279296875	2	424.21906	846.423567	0.15091	6.4021E-05	-1.3415	-0.00056911	-1.1906	-0.00050509	424.2184034867315	98.49	2.0564	98.5	97.728	99.785	0.010239					126	47	5	0	0	0	1.0004	1	12514	12514		45.952	3.5558	1	7266600	+		19132	29819	13413	13439	21566	21566					-0.005787461994373189
GGPPAPPPSA	10	Unmodified	_GGPPAPPPSA_					0	0	0			REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.21856689453125	2	424.21906	846.423567	0.87142	0.00036967	-1.9355	-0.00082109	-1.0641	-0.00045142	424.2181747148938	99.092	1.6406	98.957	98.148	99.788	-0.13526					107	39	4	0	0	0	1.0004	1	12230	12230		45.952	0	1	5421400	+		19133	29819	13413	13439	21567	21567					-0.005787461994373189
GGPPAPPPSA	10	Unmodified	_GGPPAPPPSA_					0	0	0			REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	REV__ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2187805175781	2	424.21906	846.423567	0.29841	0.00012659	-1.4896	-0.0006319	-1.1912	-0.00050531	424.2183732670556	99.233	1.6227	99.064	98.24	99.863	-0.16863					102	39	4	0	0	0	0.87795	1	12303	12303		55.504	4.1688	1	4500900	+		19134	29819	13413	13439	21568	21568					-0.005787461994373189
GGPRAPPR	8	Unmodified	_GGPRAPPR_					0	0	0		ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.233154296875	2	404.232836	806.45112	1.1468	0.00046357	-1.3905	-0.00056207	-0.24367	-9.8499E-05	404.23205253167436	84.32	2.7374	84.32	83.562	86.3	0					145	64	4	0	0	0	1.0574	1	10526	10526		26.796	0	1	14422000			19135	11112	13414	13440	21569	21569					0.04015201851461825
GGPRAPPR	8	Unmodified	_GGPRAPPR_					0	0	0		ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2327880859375	2	404.232836	806.45112	0.2566	0.00010373	-0.94328	-0.00038131	-0.68668	-0.00027758	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0574	1	10174	10174		26.796	5.0938	1	12775000			19136	11112	13414	13440	21570	21570					0.04015201851461825
GGPRRAGGVQ	10	Unmodified	_GGPRRAGGVQ_					0	0	0			REV__ENST00000301738.8_1_16:2757475-2757841:+|nuORF	REV__ENST00000301738.8_1_16:2757475-2757841:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7330322265625	2	477.765032	953.515511	-0.90556	-0.00043264	-3.4762	-0.0016608	-4.3817	-0.0020934	477.7631313481365	38.856	0.49488	38.692	38.476	38.971	-0.16459					23	13	3	0	0	0	0.03519	1	3290	3290		8.6937	0	1	497760	+		19137	30063	13415	13441	21571	21571					0.036893569376161395
GGPRRAGGVQ	10	Unmodified	_GGPRRAGGVQ_					0	0	0			REV__ENST00000301738.8_1_16:2757475-2757841:+|nuORF	REV__ENST00000301738.8_1_16:2757475-2757841:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.765032	953.515511	0.014464	6.9105E-06	-4.3124	-0.0020603	-4.298	-0.0020534	477.7629244436909	38.936	0.35072	38.71	38.523	38.874	-0.2257	0.0093222	-0.00021686	NaN	8.6937	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515120	+		19138	30063	13415	13441							0.036893569376161395
GGPRRLSL	8	Unmodified	_GGPRRLSL_					0	0	0		nc|ENSG00000103326|O75808-2|CAPN15;CAPN15|p.C975Dfs*30|1|0.05|ENSG00000103326|chr16:552876-552877|-/GACC|frameshift_variant;ENSG00000103326|ENST00000219611|CAPN15	nc|ENSG00000103326|O75808-2|CAPN15	nc|ENSG00000103326|O75808-2|CAPN15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2620849609375	2	428.261594	854.508634	-0.55429	-0.00023738	0.94817	0.00040607	0.39388	0.00016869	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0198	1	11144	11144		34.173	1.3601	1	83817000			19139	213	13416	13442	21572	21572					0.07556044057048439
GGPRRVLG	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GGPRRVLG_					1	0	0		ENST00000333677.6_1_5:149011902-149012052:+|nuORF	ENST00000333677.6_1_5:149011902-149012052:+|nuORF	ENST00000333677.6_1_5:149011902-149012052:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.25372314453125	2	427.253769	852.492984	-0.16668	-7.1214E-05	-0.17819	-7.6133E-05	-0.34487	-0.00014735	427.25375529811447	23.255	2.2724	23.331	22.319	24.591	0.076241					120	50	5	0	0	0	0.85409	2	881	844;881		54.765	8.7924	1	17722000			19140	12369	13417	13443	21573;21574	21574					0.0608375753998871
GGPWTKGT	8	Unmodified	_GGPWTKGT_					0	0	0		ENST00000475650.1_1_16:30370373-30370970:-|nuORF	ENST00000475650.1_1_16:30370373-30370970:-|nuORF	ENST00000475650.1_1_16:30370373-30370970:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.2051086425781	2	402.205953	802.397353	-0.56388	-0.0002268	-0.30876	-0.00012418	-0.87264	-0.00035098	402.20578555267815	96.135	1.8234	95.979	95.4	97.223	-0.15646					111	41	4	0	0	0	1.0106	1	11834	11834		35.618	0.41757	1	4321200			19141	15066	13418	13444	21575	21575					-0.01175015370915844
GGQEPGEEDTQ	11	Unmodified	_GGQEPGEEDTQ_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7515869140625	2	573.730914	1145.44728	-0.81735	-0.00046894	3.7982	0.0021791	2.9809	0.0017102	573.7334063163422	30.401	0.28391	30.223	30.083	30.366	-0.17818					9	6	2	0	0	0	0.02475	1	1929	1929		21.686	0	1	103990			19142	7441	13419	13445	21576	21576					-0.1196302201421986
GGQRVVPR	8	Unmodified	_GGQRVVPR_					0	0	0		ENST00000310256.6_2_1:231114958-231114997:+|nuORF	ENST00000310256.6_2_1:231114958-231114997:+|nuORF	ENST00000310256.6_2_1:231114958-231114997:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7592468261719	2	434.759218	867.503883	0.063598	2.765E-05	0.10561	4.5913E-05	0.1692	7.3563E-05	434.75923619358696	86.978	1.558	86.791	86.167	87.725	-0.18696					82	36	4	0	0	0	1.0338	1	10580	10580		31.955	1.4512	1	6540900			19143	12059	13420	13446	21577	21577					0.06483159914284897
GGQTHLGLP	9	Unmodified	_GGQTHLGLP_					0	0	0		ENSG00000163541|ENST00000393868|SUCLG1;ENST00000430989.1_1_2:84670392-84686354:-|nuORF	ENSG00000163541|ENST00000393868|SUCLG1	ENSG00000163541|ENST00000393868|SUCLG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2553405761719	2	440.237784	878.461016	-1.0945	-0.00048183	1.304	0.00057407	0.20951	9.2232E-05	440.23822909729415	38.068	1.1354	38.095	37.595	38.731	0.027275					55	31	2	0	0	0	0.023417	1	3086	3086		79.451	24.686	1	1100700			19144	7104	13421	13447	21578	21578					0.016923450661806783
GGRILRPS	8	Unmodified	_GGRILRPS_					0	0	0			REV__ENST00000530419.5_2_11:33061241-33061734:+|nuORF	REV__ENST00000530419.5_2_11:33061241-33061734:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2617492675781	2	428.261594	854.508634	-0.55429	-0.00023738	0.94817	0.00040607	0.39388	0.00016869	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0574	1	11135	11135		25.45	0	1	83817000	+		19145	34537	13422	13448	21579	21579					0.0755604405703707
GGRILSISK	9	Unmodified	_GGRILSISK_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.23675537109375	2	465.790184	929.565815	0.49092	0.00022867	-1.07	-0.0004984	-0.57908	-0.00026973	465.7896489804266	28.227	0.3661	28.308	28.167	28.533	0.080811					10	8	2	0	0	0	0.024405	1	1603	1603		35.618	11.416	1	55168	+		19146	20085	13423	13449	21580	21580					0.09821466542757662
GGRILSISK	9	Unmodified	_GGRILSISK_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.790184	929.565815	-0.37672	-0.00017547	0.3877	0.00018059	0.010978	5.1132E-06	465.79035616739066	28.498	0.33488	28.493	28.33	28.665	-0.0042019	0.050783	0.00057786	NaN	35.618	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43932	+		19147	20085	13423	13449							0.09821466542757662
GGRRDLGAAV	10	Unmodified	_GGRRDLGAAV_					0	0	0		ENST00000575513.1_1_16:11016989-11017157:+|nuORF	ENST00000575513.1_1_16:11016989-11017157:+|nuORF	ENST00000575513.1_1_16:11016989-11017157:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2750549316406	2	486.27269	970.530826	-0.42912	-0.00020867	3.3524	0.0016302	2.9233	0.0014215	486.274270331763	70.865	0.87329	70.876	70.636	71.509	0.010735					49	21	4	0	0	0	0.57594	1	8484	8484		79.713	0.26157	1	2499600			19148	17101	13424	13450	21581	21581					0.044382237348031595
GGRRSARLPG	10	Unmodified	_GGRRSARLPG_					0	0	0			REV__ENST00000163416.6_1_14:93260633-93260768:+|nuORF	REV__ENST00000163416.6_1_14:93260633-93260768:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7993774414062	2	513.799406	1025.58426	2.0399	0.0010481	-1.4903	-0.00076572	0.54963	0.0002824	513.7982730022496	19.552	0.72682	19.618	19.34	20.067	0.066195					45	14	7	0	0	0	0.91678	1	377	377		52.937	3.4952	1	663980	+		19149	29273	13425	13451	21582	21582					0.0724902123731681
GGSGGRVPK	9	Unmodified	_GGSGGRVPK_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.6959228515625	2	407.730126	813.4457	0.69876	0.0002849	4.0932	0.0016689	4.792	0.0019538	407.7318592029955	36.361	0.57882	36.144	35.913	36.491	-0.21661					15	14	2	0	0	0	0.024495	1	2887	2887		19.997	0	1	145230			19150	2069	13426	13452	21583	21583					0.03151478269001018
GGSPQGLLNIK	11	Unmodified	_GGSPQGLLNIK_					0	0	0		ENST00000586616.5_1_19:1483766-1490130:-|nuORF;ENST00000441747.6_1_19:1482426-1490130:-|nuORF	ENST00000586616.5_1_19:1483766-1490130:-|nuORF	ENST00000586616.5_1_19:1483766-1490130:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.311279296875	2	542.31148	1082.60841	-0.20697	-0.00011224	2.3295	0.0012633	2.1225	0.0011511	542.3132084600306	70.996	0.94566	70.724	70.451	71.397	-0.27185					44	22	3	0	0	0	0.70358	1	8282	8282		63.534	0.22758	1	5309700			19151	14365	13427	13453	21584	21584					0.07040816880316925
GGSPRVPSP	9	Unmodified	_GGSPRVPSP_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2299499511719	2	427.229959	852.445365	-0.35072	-0.00014984	0.60579	0.00025881	0.25508	0.00010898	427.2300950781365	29.42	0.60001	29.498	29.202	29.802	0.078346					26	14	2	0	0	0	0.26966	1	1754	1754		79.713	10.926	1	1082800	+		19152	27813	13428	13454	21585	21585					0.013240585491416823
GGSPRVPSP	9	Unmodified	_GGSPRVPSP_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	427.229959	852.445365	-1.5425	-0.00065899	1.8853	0.00080546	0.34283	0.00014647	427.23065204205136	29.753	0.76654	29.753	29.37	30.137	0	0.094998	0.00062557	NaN	79.713	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1068100	+		19153	27813	13428	13454							0.013240585491416823
GGSPRVPSP	9	Unmodified	_GGSPRVPSP_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	427.229959	852.445365	-0.601	-0.00025676	0.95812	0.00040934	0.35712	0.00015257	427.2302371384286	29.719	0.98136	29.722	29.427	30.408	0.0031357	0.064601	-0.00016669	NaN	79.713	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023200	+		19154	27813	13428	13454							0.013240585491416823
GGSPRVPSP	9	Unmodified	_GGSPRVPSP_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	427.229959	852.445365	-0.35072	-0.00014984	0.60579	0.00025881	0.25508	0.00010898	427.2300950781365	29.42	0.60001	29.498	29.202	29.802	0.078346	-0.1596	-0.00046773	NaN	79.713	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1082800	+		19155	27813	13428	13454							0.013240585491416823
GGSTARRRVE	10	Unmodified	_GGSTARRRVE_					0	0	0			REV__ENST00000566581.5_1_15:34656349-34659376:-|nuORF	REV__ENST00000566581.5_1_15:34656349-34659376:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3331298828125	2	544.799603	1087.58465	0.74869	0.00040789	4.241	0.0023105	4.9897	0.0027184	544.8016968209272	97.015	0.22286	96.891	96.706	96.929	-0.12368					6	4	2	0	0	0	0.03519	1	12009	12009		35.152	0.97948	1	121990	+		19156	27024	13429	13455	21586	21586					0.04436396166511258
GGSVRDLLR	9	Unmodified	_GGSVRDLLR_					0	0	0		ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7840576171875	2	486.78289	971.551228	0.35347	0.00017206	2.1534	0.0010483	2.5069	0.0012203	486.78388065302573	100.91	2.3972	100.74	100.32	102.72	-0.17178					119	58	3	0	0	0	0.247	1	12557	12557		82.75	0.44546	1	13095000			19157	8825	13430	13456	21587	21587					0.06431394394621748
GGSVRGLRAAR	11	Unmodified	_GGSVRGLRAAR_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3271484375	2	550.325788	1098.63702	-0.26348	-0.000145	1.9599	0.0010786	1.6964	0.00093358	550.3279305908578	98.909	1.0484	98.919	98.397	99.446	0.010231					50	23	3	0	0	0	1.0075	1	12605	12605		35.152	1.6364	1	216050			19158	16936	13431	13457	21588	21588					0.09164979300135201
GGSVRGLRAAR	11	Unmodified	_GGSVRGLRAAR_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.3261108398438	2	550.325788	1098.63702	-0.11854	-6.5236E-05	2.5421	0.001399	2.4236	0.0013338	550.3277555338492	99.243	1.119	99.074	98.417	99.536	-0.16862					47	25	3	0	0	0	1.0292	1	12305	12305		30.318	2.2362	1	186930			19159	16936	13431	13457	21589	21589					0.09164979300135201
GGTAKLPHQRL	11	Unmodified	_GGTAKLPHQRL_					0	0	0		SYNE2-ITPK1|1|fusion;ENSG00000100605|ENST00000267615|ITPK1	SYNE2-ITPK1|1|fusion	SYNE2-ITPK1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3424072265625	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0392	1	11318	11318		28.081	2.5074	1	15816000			19160	38049	13432	13458	21590	21590					0.09147016757128767
GGVAKASGGET	11	Unmodified	_GGVAKASGGET_					0	0	0		nc|ENSG00000057593|P08709|F7	nc|ENSG00000057593|P08709|F7	nc|ENSG00000057593|P08709|F7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.2336120605469	2	467.235439	932.456324	-0.16518	-7.7176E-05	-3.5953	-0.0016799	-3.7605	-0.001757	467.23338580236407	67.852	0.94255	67.614	67.245	68.187	-0.23814					45	22	4	0	0	0	0.93459	1	7820	7820		49.536	3.5841	1	804820			19161	18051	13433	13459	21591	21591					-0.012605838672243408
GGVERVPR	8	Unmodified	_GGVERVPR_					0	0	0			REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|16|2|sense	REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|16|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2516174316406	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.043	1	9868	9868		30.504	1.3541	1	1708300	+		19162	37594	13434	13460	21592	21592					0.04839453677379879
GGVERVPR	8	Unmodified	_GGVERVPR_					0	0	0			REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|16|2|sense	REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|16|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25146484375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0009	1	9659	9659		37.159	1.5408	1	2257900	+		19163	37594	13434	13460	21593	21593					0.04839453677379879
GGVERVPR	8	Unmodified	_GGVERVPR_					0	0	0			REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|16|2|sense	REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|16|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2518310546875	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0106	1	9441	9441		35.618	5.1146	1	2292300	+		19164	37594	13434	13460	21594	21594					0.04839453677379879
GGVIFQKKAA	10	Unmodified	_GGVIFQKKAA_					0	0	0		ENST00000460614.1_1_9:139943111-139943842:-|nuORF;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;ENSG00000054179|ENST00000355097|ENTPD2	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80340576171875	2	509.805834	1017.59712	-0.34628	-0.00017653	-3.3935	-0.00173	-3.7398	-0.0019066	509.80369755737905	88.297	0.82144	88.126	87.893	88.714	-0.17054					32	19	2	0	0	0	1.1267	1	10781	10781		29.15	0	1	364470			19165	1168	13435	13461	21595	21595					0.08902039576832976
GGVLGSRKGV	10	Unmodified	_GGVLGSRKGV_					0	0	0		nc|ENSG00000143627|P30613-2|PKLR;ENSG00000143627|ENST00000342741|PKLR	nc|ENSG00000143627|P30613-2|PKLR	nc|ENSG00000143627|P30613-2|PKLR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.28009033203125	2	465.279983	928.545414	0.58248	0.00027101	-0.39288	-0.0001828	0.18959	8.8214E-05	465.2796843838928	87.889	1.2768	87.859	87.495	88.772	-0.029808					82	30	4	0	0	0	1.0719	1	11045	11045		36.447	4.4919	1	1985900			19166	5675	13436	13462	21596	21596					0.07828295882950442
GGVLLHHLLT	10	Unmodified	_GGVLLHHLLT_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|17|2|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|17|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.6072387695312	2	530.319109	1058.62366	-0.59825	-0.00031726	-1.162	-0.00061621	-1.7602	-0.00093347	530.3184357621548	73.011	0.46672	72.746	72.511	72.977	-0.26479					19	10	2	0	0	0	0.03519	1	8576	8576		37.159	22.495	1	299550	+		19167	36336	13437	13463	21597	21597					0.09669728468179528
GGVLMGTLLL	10	Unmodified	_GGVLMGTLLL_					0	0	0			REV__ENSG00000184999|ENST00000332793|SLC22A10	REV__ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2939453125	2	487.291171	972.567789	-0.48665	-0.00023714	4.4592	0.0021729	3.9725	0.0019358	487.2932372320569	90.024	1.5907	89.899	89.122	90.712	-0.12512					97	37	4	0	0	0	1.1259	1	11041	11041		24.203	1.1603	1	2379400	+		19168	27720	13438	13464	21598	21598					0.08040759236359918
GGVLMGTLLL	10	Unmodified	_GGVLMGTLLL_					0	0	0			REV__ENSG00000184999|ENST00000332793|SLC22A10	REV__ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.293212890625	2	487.291171	972.567789	0.4829	0.00023531	3.4556	0.0016839	3.9385	0.0019192	487.2927555004163	90.011	1.4301	89.872	89.315	90.745	-0.13824					97	33	4	0	0	0	1.1166	1	10978	10978		30.504	5.0535	1	2297800	+		19169	27720	13438	13464	21599	21599					0.08040759236359918
GGVLMTLLGL	10	Unmodified	_GGVLMTLLGL_					0	0	0		ENST00000404056.1_1_22:24179392-24180785:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2933349609375	2	487.291171	972.567789	-0.66256	-0.00032286	3.864	0.0018829	3.2015	0.0015601	487.2929083828136	89.879	1.2819	89.879	89.605	90.887	0					77	30	4	0	0	0	1.0541	1	11367	11367		38.806	0.99462	1	3154500			19170	2105	13439	13465	21600	21600					0.08040759236359918
GGVLMTLLGL	10	Unmodified	_GGVLMTLLGL_					0	0	0		ENST00000404056.1_1_22:24179392-24180785:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.29339599609375	2	487.291171	972.567789	0.10942	5.3319E-05	3.3284	0.0016219	3.4378	0.0016752	487.29251232660437	89.923	1.2813	89.906	89.625	90.906	-0.016708					80	30	5	0	0	0	1.0004	1	11327	11327		45.952	11.779	1	2839600			19171	2105	13439	13465	21601	21601					0.08040759236359918
GGVLMTLLGL	10	Unmodified	_GGVLMTLLGL_					0	0	0		ENST00000404056.1_1_22:24179392-24180785:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2940368652344	2	487.291171	972.567789	-0.23305	-0.00011356	3.2904	0.0016034	3.0573	0.0014898	487.292578243981	89.93	1.0289	89.944	89.674	90.702	0.013443					74	24	4	0	0	0	0.9856	2	11330	11280;11330		47.916	10.756	1	3269400			19172	2105	13439	13465	21602;21603	21603					0.08040759236359918
GGVLMTLLGL	10	Unmodified	_GGVLMTLLGL_					0	0	0		ENST00000404056.1_1_22:24179392-24180785:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	ENST00000404056.1_1_22:24179392-24180785:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2934875488281	2	487.291171	972.567789	0.4829	0.00023531	3.4556	0.0016839	3.9385	0.0019192	487.2927555004163	90.011	1.4301	89.872	89.315	90.745	-0.13824					97	33	4	0	0	0	0.87795	3	11000	10987;11000;11025		55.504	18.345	1	2297800			19173	2105	13439	13465	21604;21605;21606	21605					0.08040759236359918
GGVRVARP	8	Unmodified	_GGVRVARP_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.24871826171875	2	406.248486	810.48242	0.33702	0.00013691	-3.7498	-0.0015234	-3.4128	-0.0013864	406.2464734304041	89.972	2.1598	89.972	89.481	91.641	0					91	51	3	0	0	0	1.0572	1	11388	11388		28.254	7.7724	1	646990	+		19174	26262	13440	13466	21607	21607					0.06959774885558545
GGVSALFIVF	10	Unmodified	_GGVSALFIVF_					0	0	0			REV__ENSG00000164414|ENST00000369552|SLC35A1	REV__ENSG00000164414|ENST00000369552|SLC35A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.29205322265625	2	505.289485	1008.56442	0.44319	0.00022394	3.7684	0.0019041	4.2116	0.0021281	505.29098546991	96.087	1.6768	96.094	95.647	97.323	0.0065002					112	38	5	0	0	0	1.1237	1	12217	12217		23.042	2.0956	1	854940	+		19175	25752	13441	13467	21608	21608					0.060478324539985806
GGWLAPIVPM	10	Unmodified	_GGWLAPIVPM_					0	0	0			REV__AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense	REV__AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7854614257812	2	520.783513	1039.55247	0.26776	0.00013944	1.1291	0.00058803	1.3969	0.00072748	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	1.0812	1	13627	13627		35.201	2.4502	1	6875800	+		19176	19131	13442	13468	21609	21609					0.03427892439140123
GGYSIFLILI	10	Unmodified	_GGYSIFLILI_					0	0	0		ENSG00000158488|ENST00000368167|CD1E;nc|ENSG00000158488|P15812-7|CD1E;nc|ENSG00000158488|P15812-2|CD1E;nc|ENSG00000158488|P15812-4|CD1E;nc|ENSG00000158488|P15812-5|CD1E;nc|ENSG00000158488|P15812-6|CD1E;nc|ENSG00000158488|P15812-13|CD1E;nc|ENSG00000158488|P15812-8|CD1E;nc|ENSG00000158488|P15812-9|CD1E;nc|ENSG00000158488|P15812-11|CD1E;nc|ENSG00000158488|P15812-12|CD1E	ENSG00000158488|ENST00000368167|CD1E	ENSG00000158488|ENST00000368167|CD1E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3111572265625	2	548.326068	1094.63758	-1.0145	-0.00055629	-1.2622	-0.00069207	-2.2767	-0.0012484	548.3253103247133	56.359	0.14619	56.2	56.135	56.281	-0.15856					5	3	2	0	0	0	0.03519	1	6260	6260		37.159	12.64	1	188140			19177	6677	13443	13469	21610	21610					0.09404961176619508
GHAHHHQVR	9	Unmodified	_GHAHHHQVR_					0	0	0		nc|ENSG00000198276|Q9NWZ5-2|UCKL1	nc|ENSG00000198276|Q9NWZ5-2|UCKL1	nc|ENSG00000198276|Q9NWZ5-2|UCKL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2981567382812	2	539.773723	1077.53289	-1.1142	-0.0006014	0.65307	0.00035251	-0.4611	-0.00024889	540.2778030072463	21.773	0.28412	21.773	21.584	21.868	0					7	5	2	0	0	0	0.024412	1	713	713		31.955	1.6371	1	11568			19178	18646	13444	13470	21611	21611					-0.0027730273673114425
GHARLNEL	8	Unmodified	_GHARLNEL_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MSMS	OPSCC_39_ClassI_Rep-2	2	455.24981689453125	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.01	1	56.845	56.345	57.345	-0.16431								0	0	0	0.68408	1	6357	6357		42.474	0	1		+		19179	28801	13445	13471	21612	21612					0.02491149814761684
GHATIMLI	8	Unmodified	_GHATIMLI_					0	0	0			REV__ENST00000551407.5_1_12:77191259-77191304:+|nuORF	REV__ENST00000551407.5_1_12:77191259-77191304:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2561950683594	2	428.241481	854.468409	-1.1798	-0.00050522	2.983	0.0012775	1.8033	0.00077224	428.24380853140195	44.642	0.34069	44.493	44.322	44.662	-0.1488					13	9	2	0	0	0	0.027866	1	4261	4261		39.021	9.18	1	79114	+		19180	34933	13446	13472	21613	21613					0.035353613422671515
GHAVIGPAP	9	Unmodified	_GHAVIGPAP_					0	0	0			REV__nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	REV__nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.742431640625	2	409.729595	817.444637	0.33171	0.00013591	-1.6563	-0.00067863	-1.3246	-0.00054271	409.72890746502003	55.062	0.28322	54.911	54.782	55.065	-0.15036					9	7	2	0	0	0	0.024389	1	6043	6043		39.021	9.18	1	157280	+		19181	37153	13447	13473	21614	21614					0.028612639000812123
GHDPDRSQ	8	Unmodified	_GHDPDRSQ_					0	0	0			REV__ENST00000485889.1_1_3:37048523-37050363:+|nuORF	REV__ENST00000485889.1_1_3:37048523-37050363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.25823974609375	2	456.20193	910.389307	-0.16745	-7.6391E-05	-1.8654	-0.00085102	-2.0329	-0.00092741	456.20094256891593	32.155	0.22993	32.217	32.085	32.315	0.062885					6	5	2	0	0	0	0.027866	1	2164	2164		56.721	23.909	1	30736	+		19182	33573	13448	13474	21615	21615					-0.0694719435832667
GHDRRPQF	8	Unmodified	_GHDRRPQF_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27978515625	2	506.757207	1011.49986	-0.85244	-0.00043198	-0.37245	-0.00018874	-1.2249	-0.00062072	507.25680548188245	49.676	0.3375	49.75	49.503	49.84	0.074196					11	8	2	0	0	0	0.027866	1	5074	5074		28.254	9.1508	1	96813			19183	6747	13449	13475	21616	21616					-0.005429295794328937
GHFISTEDN	9	Unmodified	_GHFISTEDN_					0	0	0		TRMU|p.I247T|1|0.4|ENSG00000100416|chr22:46352298-46352298|T/C|missense_variant	TRMU|p.I247T|1|0.4|ENSG00000100416|chr22:46352298-46352298|T/C|missense_variant	TRMU|p.I247T|1|0.4|ENSG00000100416|chr22:46352298-46352298|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.8035888671875	2	510.225071	1018.43559	0.055502	2.8319E-05	-3.7203	-0.0018982	-3.6648	-0.0018699	510.2229770028502	86.691	0.47814	86.504	86.254	86.732	-0.18696					24	10	3	0	0	0	0.024477	1	10502	10502		35.618	0	1	108760			19184	38107	13450	13476	21617	21617					-0.07289174246909624
GHFLHTLDK	9	Unmodified	_GHFLHTLDK_					0	0	0			REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF	REV__ENST00000375887.8_1_13:108939174-108955651:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2838134765625	2	534.285266	1066.55598	-0.18865	-0.00010079	-1.0906	-0.00058269	-1.2792	-0.00068348	534.2849371700632	106.21	1.4778	106.08	105.4	106.88	-0.1238					106	54	3	0	0	0	0.75397	1	13212	13212		42.396	4.5846	1	251420	+		19185	31343	13451	13477	21618	21618					0.025362785373545194
GHFLLAPIP	9	Unmodified	_GHFLLAPIP_					0	0	0		ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7784118652344	2	482.78437	963.554188	-1.0256	-0.00049513	-3.2782	-0.0015827	-4.3038	-0.0020778	482.78264277799303	49.596	1.1875	49.67	49.316	50.503	0.074192					85	33	4	0	0	0	0.80342	1	5071	5071		39.021	1.8624	1	3057000			19186	3910	13452	13478	21619	21619					0.07095269519413705
GHFRKERI	8	Unmodified	_GHFRKERI_					0	0	0		ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	ENSG00000134817|ENST00000606794|APLNR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2445068359375	2	521.798875	1041.5832	-0.33219	-0.00017333	-1.8749	-0.0009783	-2.2071	-0.0011516	521.7982471714819	49.89	1.0488	49.971	49.661	50.71	0.08099					73	30	3	0	0	0	0.027866	1	5238	5238		55.504	0	1	1767700			19187	4831	13453	13479	21620	21620					0.06406806868426429
GHGGKVHRVF	10	Unmodified	_GHGGKVHRVF_					0	0	0			REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3035888671875	2	547.304324	1092.5941	-0.014614	-7.9982E-06	-1.118	-0.00061189	-1.1326	-0.00061989	547.3036205754988	37.252	1.0608	37.059	36.735	37.796	-0.193					68	27	4	0	0	0	1.0781	1	2994	2994		35.618	1.4457	1	4318700	+		19188	22005	13454	13480	21621	21621					0.051502092427199386
GHGGKVHRVF	10	Unmodified	_GHGGKVHRVF_					0	0	0			REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3040161132812	2	547.304324	1092.5941	-0.31394	-0.00017182	-0.44487	-0.00024348	-0.75881	-0.0004153	547.3036385442949	37.203	1.0057	36.994	36.685	37.691	-0.2092					78	25	5	0	0	0	1.0781	1	2975	2975		35.618	5.1146	1	3623500	+		19189	22005	13454	13480	21622	21622					0.051502092427199386
GHGGVVNISKP	11	Unmodified	_GHGGVVNISKP_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7916259765625	2	532.795998	1063.57744	1.779	0.00094783	-3.2552	-0.0017344	-1.4763	-0.00078654	532.7933424252674	19.744	0.62866	19.81	19.389	20.018	0.066195					16	12	2	0	0	0	0.024738	1	414	414		42.396	1.618	1	15976			19190	2433	13455	13481	21623	21623					0.04819663566104282
GHGLPRSE	8	Unmodified	_GHGLPRSE_					0	0	0		ENST00000396191.5_1_7:32109982-32110375:-|nuORF	ENST00000396191.5_1_7:32109982-32110375:-|nuORF	ENST00000396191.5_1_7:32109982-32110375:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.7200012207031	2	426.719759	851.424964	0.10469	4.4673E-05	0.27503	0.00011736	0.37972	0.00016203	426.7197452256144	21.792	0.95768	21.601	21.226	22.184	-0.19072					38	19	4	0	0	0	0.56592	1	701	701		79.451	5.4763	1	366250			19191	13546	13456	13482	21624	21624					-0.006691121106655373
GHGPGGPHGGL	11	Unmodified	_GHGPGGPHGGL_					0	0	0			REV__ENST00000392006.7_1_19:41770362-41770497:+|nuORF	REV__ENST00000392006.7_1_19:41770362-41770497:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.25140380859375	2	471.730658	941.446762	-0.4733	-0.00022327	-0.42515	-0.00020056	-0.89845	-0.00042383	471.73019077096035	27.781	0.33033	27.624	27.434	27.764	-0.15664					11	7	2	0	0	0	0.024764	1	1519	1519		40.573	17.05	1	66070	+		19192	31593	13457	13483	21625	21625					-0.026303073620852047
GHGPGGPHGGL	11	Unmodified	_GHGPGGPHGGL_					0	0	0			REV__ENST00000392006.7_1_19:41770362-41770497:+|nuORF	REV__ENST00000392006.7_1_19:41770362-41770497:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.730658	941.446762	-0.26605	-0.0001255	-0.93887	-0.00044289	-1.2049	-0.00056839	471.7300635015629	28.037	0.41112	27.792	27.55	27.961	-0.24524	0.083796	-0.00038998	NaN	40.573	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170830	+		19193	31593	13457	13483							-0.026303073620852047
GHGPGGPHGGL	11	Unmodified	_GHGPGGPHGGL_					0	0	0			REV__ENST00000392006.7_1_19:41770362-41770497:+|nuORF	REV__ENST00000392006.7_1_19:41770362-41770497:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.730658	941.446762	-0.68544	-0.00032334	0.98481	0.00046457	0.29937	0.00014122	471.7307260683648	27.876	0.32333	27.707	27.445	27.768	-0.16816	-0.00037658	0.0014249	NaN	40.573	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70543	+		19194	31593	13457	13483							-0.026303073620852047
GHGRTTLMRPF	11	Unmodified	_GHGRTTLMRPF_					0	0	0			REV__ENSG00000135077|ENST00000307851|HAVCR2	REV__ENSG00000135077|ENST00000307851|HAVCR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7485046386719	3	424.892513	1271.65571	-0.53435	-0.00022704	2.5333	0.0010764	1.999	0.00084936	424.89359597663406	26.574	0.98994	26.574	26.083	27.073	0					67	23	5	0	0	0	0.024789	1	1301	1301		33.039	12.202	1	1456900			19195	23508	13458	13484	21626	21626					0.03074772879676857
GHGTPPLPVL	10	Unmodified	_GHGTPPLPVL_					0	0	0			REV__ENST00000314045.11_1_12:113595922-113596300:-|nuORF	REV__ENST00000314045.11_1_12:113595922-113596300:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3010559082031	2	494.284734	986.554916	0.59369	0.00029345	-2.436	-0.0012041	-1.8423	-0.00091061	494.2828977945517	96.122	0.62466	96.129	95.947	96.572	0.0065079					20	14	2	0	0	0	0.03519	1	12219	12219		35.618	5.1146	1	296130	+		19196	30238	13459	13485	21627	21627					0.0611006416845612
GHGTPPLPVL	10	Unmodified	_GHGTPPLPVL_					0	0	0			REV__ENST00000314045.11_1_12:113595922-113596300:-|nuORF	REV__ENST00000314045.11_1_12:113595922-113596300:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.301025390625	2	494.284734	986.554916	0.85987	0.00042502	-4.0709	-0.0020122	-3.211	-0.0015872	494.2847576194225	96.373	0.2482	96.25	96.147	96.396	-0.12305					7	5	2	0	0	0	0.03519	1	11937	11937		29.15	7.4472	1	76474	+		19197	30238	13459	13485	21628	21628					0.0611006416845612
GHHFWSHR	8	Unmodified	_GHHFWSHR_					0	0	0		HRC|p.P86R|1|0.03|ENSG00000130528|chr19:49154981-49154981|G/C|missense_variant	HRC|p.P86R|1|0.03|ENSG00000130528|chr19:49154981-49154981|G/C|missense_variant	HRC|p.P86R|1|0.03|ENSG00000130528|chr19:49154981-49154981|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2924194335938	2	532.252092	1062.48963	-1.2665	-0.00067409	0.12211	6.4995E-05	-1.1444	-0.00060909	532.2519418976362	29.953	1.0102	29.779	29.404	30.414	-0.17447					54	23	3	0	0	0	0.027866	1	1846	1846		38.806	13.356	1	431470			19198	17746	13460	13486	21629	21629					-0.039114925139983825
GHHPEPLEVLL	11	Unmodified	_GHHPEPLEVLL_					0	0	0		ENST00000600795.1_1_11:77884868-77885513:+|nuORF	ENST00000600795.1_1_11:77884868-77885513:+|nuORF	ENST00000600795.1_1_11:77884868-77885513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.90576171875	3	414.227667	1239.66117	0.44765	0.00018543	-2.5193	-0.0010435	-2.0716	-0.00085812	414.22566487290555	20.984	0.24591	21.053	20.907	21.153	0.068901					6	4	2	0	0	0	0.024762	1	574	574		36.318	20.311	1	12332			19199	17503	13461	13487	21630	21630					0.050927749431366465
GHHPHRLL	8	Unmodified	_GHHPHRLL_					0	0	0		ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.287841796875	2	483.77266	965.530767	-0.88226	-0.00042681	4.1745	0.0020195	3.2922	0.0015927	483.77502896282795	25.578	0.94924	25.544	24.86	25.809	-0.034397					31	22	2	0	0	0	0.027866	1	1155	1155		42.474	8.9589	1	166120			19200	14892	13462	13488	21631	21631					0.04662268525464697
GHHPHRLL	8	Unmodified	_GHHPHRLL_					0	0	0		ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.77266	965.530767	-0.046118	-2.231E-05	-0.86669	-0.00041928	-0.91281	-0.00044159	483.77194140710645	25.418	0.49411	25.498	25.254	25.749	0.08009	0.13192	0.00064987	NaN	52.299	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161170			19201	14892	13462	13488							0.04662268525464697
GHHPHRLL	8	Unmodified	_GHHPHRLL_					0	0	0		ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.77266	965.530767	-0.3967	-0.00019191	-1.5925	-0.00077042	-1.9892	-0.00096233	483.77175779692226	25.588	0.36937	25.361	25.148	25.517	-0.22683	-0.0051834	-5.2405E-05	NaN	52.299	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175140			19202	14892	13462	13488							0.04662268525464697
GHHPHRLL	8	Unmodified	_GHHPHRLL_					0	0	0		ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.77266	965.530767	-0.22561	-0.00010914	-2.1075	-0.0010195	-2.3331	-0.0011287	483.7715201720635	25.366	0.76089	25.195	24.781	25.542	-0.17078	-0.17157	-0.00055062	NaN	52.299	24	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117200			19203	14892	13462	13488							0.04662268525464697
GHHPHRLL	8	Unmodified	_GHHPHRLL_					0	0	0		ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	ENST00000468965.2_1_3:47462484-47464052:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.77266	965.530767	0.42046	0.00020341	-2.2922	-0.0011089	-1.8717	-0.0009055	483.7714655136163	25.405	0.54537	25.234	25.034	25.579	-0.17151	-0.13271	-0.00072937	NaN	52.299	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130860			19204	14892	13462	13488							0.04662268525464697
GHICFVIL	8	Unmodified	_GHICFVIL_					0	0	0			REV__ENST00000261681.8_1_14:67800483-67800651:+|nuORF	REV__ENST00000261681.8_1_14:67800483-67800651:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2481994628906	2	451.251849	900.489145	-0.21624	-9.7577E-05	-0.79452	-0.00035853	-1.0108	-0.0004561	451.24998592801467	39.625	2.8572	39.396	38.906	41.763	-0.22836					114	75	3	0	0	0	0.9599	1	3371	3371		43.626	2.8479	1	3105100	+		19205	29631	13463	13489	21632	21632					0.034919517219236695
GHIERYSVL	9	Unmodified	_GHIERYSVL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2882690429688	2	537.290548	1072.56654	-0.83745	-0.00044995	-3.5706	-0.0019184	-4.408	-0.0023684	537.2885549870396	23.69	0.61761	23.767	23.518	24.136	0.076241					30	13	3	0	0	0	0.72875	1	920	920		44.117	4.864	1	374370	+		19206	23585	13464	13490	21633	21633					0.033162611917987306
GHIERYSVL	9	Unmodified	_GHIERYSVL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.290548	1072.56654	-0.89877	-0.0004829	-3.4355	-0.0018459	-4.3343	-0.0023288	537.2886324472059	23.831	0.60054	23.831	23.566	24.166	0	0.049592	3.6748E-05	NaN	44.117	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437700	+		19207	23585	13464	13490							0.033162611917987306
GHIERYSVL	9	Unmodified	_GHIERYSVL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.290548	1072.56654	-1.2702	-0.00068247	-3.2471	-0.0017446	-4.5173	-0.0024271	537.2887704456155	23.808	0.56063	23.747	23.514	24.075	-0.060862	-0.034396	0.00023921	NaN	44.117	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386600	+		19208	23585	13464	13490							0.033162611917987306
GHIERYSVL	9	Unmodified	_GHIERYSVL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	537.290548	1072.56654	-0.83745	-0.00044995	-3.5706	-0.0019184	-4.408	-0.0023684	537.2885549870396	23.69	0.61761	23.767	23.518	24.136	0.076241	-0.015196	-0.00010834	NaN	44.117	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374370	+		19209	23585	13464	13490							0.033162611917987306
GHIIKSKW	8	Unmodified	_GHIIKSKW_					0	0	0			REV__ENST00000469861.1_1_1:205797750-205798998:-|nuORF	REV__ENST00000469861.1_1_1:205797750-205798998:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7793273925781	2	484.787444	967.560336	-0.43496	-0.00021086	-3.3917	-0.0016443	-3.8267	-0.0018551	484.7855233127898	26.16	1.2138	26.16	25.569	26.783	0					55	28	3	0	0	0	0.027866	1	1266	1266		35.618	19.976	1	908520	+		19210	33138	13465	13491	21634	21634					0.07525787750932977
GHIKGKVF	8	Unmodified	_GHIKGKVF_					0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2667236328125	2	443.268887	884.523222	0.0095453	4.2312E-06	-4.3127	-0.0019117	-4.3032	-0.0019075	443.2668808099724	85.766	1.0554	85.708	85.355	86.411	-0.05761					65	24	4	0	0	0	1.0574	1	10746	10746		26.796	1.3459	1	1292400	+		19211	28279	13466	13492	21635	21635					0.07634116205178998
GHISVVQLLL	10	Unmodified	_GHISVVQLLL_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.802734375	2	539.834591	1077.65463	-0.45848	-0.0002475	4.2527	0.0022958	3.7942	0.0020483	539.8366704641678	102.25	0.48445	102.24	101.97	102.46	-0.0054474					21	10	3	0	0	0	0.03519	1	13001	13001		25.574	6.2141	1	120200			19212	7494	13467	13493	21636	21636					0.11890881782437646
GHIVIKAT	8	Unmodified	_GHIVIKAT_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	419.1658020019531	2	419.760895	837.507237	-0.40442	-0.00016976	3.0024	0.0012603	2.5979	0.0010905	419.7624219552529	22.936	0.46128	22.75	22.554	23.015	-0.18539					13	9	2	0	0	0	0.027866	1	875	875		8.8223	0.59103	1	67616			19213	6713	13468	13494	21637	21637					0.08198409968269971
GHKDAVDVRA	10	Unmodified	_GHKDAVDVRA_					0	0	0			REV__ENSG00000189045|ENST00000601380|ANKDD1B	REV__ENSG00000189045|ENST00000601380|ANKDD1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.283935546875	2	534.283254	1066.55196	-0.37302	-0.0001993	2.4947	0.0013329	2.1217	0.0011336	534.2845398871997	105.79	0.63905	105.79	105.54	106.18	0.00015259					52	22	3	0	0	0	1.1307	1	13509	13509		26.693	3.1702	1	294350	+		19214	28089	13469	13495	21638	21638					0.021341890436588073
GHKNRYVKVPR	11	Unmodified	_GHKNRYVKVPR_					0	0	0		ENSG00000184903|ENST00000405709|IMMP2L	ENSG00000184903|ENST00000405709|IMMP2L	ENSG00000184903|ENST00000405709|IMMP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.93292236328125	3	451.933588	1352.77894	0.91985	0.00041571	-2.9981	-0.0013549	-2.0782	-0.00093923	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0592	1	12287	12287		22.562	0.78116	1	1435400			19215	9379	13470	13496	21639	21639					0.11665772322430712
GHKQPLGKC	9	Unmodified	_GHKQPLGKC_					0	0	0			REV__ENST00000530248.2_1_8:10966093-10966243:-|nuORF	REV__ENST00000530248.2_1_8:10966093-10966243:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.76727294921875	2	484.260736	966.50692	-0.019979	-9.6748E-06	1.3156	0.00063712	1.2957	0.00062744	484.25802662178376	27.327	1.0094	27.17	26.715	27.724	-0.15664					63	23	5	0	0	0	0.88411	1	1461	1461		33.516	6.7195	1	3021700	+		19216	34532	13471	13497	21640	21640					0.022326669767721796
GHKSRLAG	8	Unmodified	_GHKSRLAG_					0	0	0			REV__nc|ENSG00000067066|P23497|SP100	REV__nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2379150390625	2	413.238119	824.461684	-0.49111	-0.00020295	1.2389	0.00051195	0.74776	0.000309	413.2385346560077	89.906	0.95889	89.778	89.37	90.329	-0.12775					56	22	4	0	0	0	1.0574	1	11003	11003		27.882	2.4321	1	1257600	+		19217	36464	13472	13498	21641	21641					0.04243184505889985
GHLERECME	9	Unmodified	_GHLERECME_					0	0	0		ENSG00000126218|ENST00000375559|F10;ENST00000477269.5_1_13:113777169-113798523:+|nuORF;ENST00000483537.1_1_13:113777169-113784337:+|nuORF	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.3353881835938	2	552.234058	1102.45356	0.080195	4.4287E-05	-0.53652	-0.00029629	-0.45633	-0.000252	552.2336040866134	17.51	0.32285	17.367	17.229	17.552	-0.14278					9	6	2	0	0	0	0.024541	1	184	184		23.042	0	1	17580			19218	4184	13473	13499	21642	21642					-0.09356498588044815
GHLEVVKFLIQ	11	Unmodified	_GHLEVVKFLIQ_					0	0	0		ENST00000581143.1_1_17:61466073-61473304:+|nuORF;nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2	ENST00000581143.1_1_17:61466073-61473304:+|nuORF	ENST00000581143.1_1_17:61466073-61473304:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8827514648438	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	0.97926	1	11962	11962		41.427	12.257	1	3421300			19219	8094	13474	13500	21643	21643					0.11490511391002656
GHLFHVSR	8	Unmodified	_GHLFHVSR_					0	0	0		ENSG00000174514|ENST00000367147|MFSD4A	ENSG00000174514|ENST00000367147|MFSD4A	ENSG00000174514|ENST00000367147|MFSD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7924499511719	2	476.759218	951.503883	0.7909	0.00037707	-2.0292	-0.00096744	-1.2383	-0.00059037	476.75823913881226	56.053	0.6386	56.053	55.786	56.424	0					28	17	2	0	0	0	0.027866	1	6280	6280		42.474	6.8562	1	296180			19220	8478	13475	13501	21644	21644					0.0261915991427486
GHLGPTRD	8	Unmodified	_GHLGPTRD_					0	0	0			REV__ENSG00000162300|ENST00000294258|ZFPL1	REV__ENSG00000162300|ENST00000294258|ZFPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.71990966796875	2	426.719759	851.424964	0.67164	0.0002866	-0.30182	-0.00012879	0.36982	0.00015781	426.7194841583843	21.614	1.0015	21.437	21.065	22.066	-0.17721					40	20	4	0	0	0	0.95679	1	692	692		44.117	5.3107	1	417550	+		19221	25426	13476	13502	21645	21645					-0.00669112110676906
GHLHKLVGK	9	Unmodified	_GHLHKLVGK_					0	0	0			REV__ENSG00000237136|ENST00000438731|C4orf51	REV__ENSG00000237136|ENST00000438731|C4orf51	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3006286621094	2	494.806168	987.597784	0.12487	6.1784E-05	3.26	0.0016131	3.3848	0.0016748	494.8074389512768	99.25	2.7238	99.26	97.061	99.785	0.010239					92	62	4	0	0	0	0.024541	1	12349	12349		11.511	0	1	266570	+		19222	28937	13477	13503	21646	21646					0.10348879016567025
GHLIPLPLQ	9	Unmodified	_GHLIPLPLQ_					0	0	0		ENST00000229340.9_1_12:120533638-120533773:-|nuORF	ENST00000229340.9_1_12:120533638-120533773:-|nuORF	ENST00000229340.9_1_12:120533638-120533773:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77081298828125	2	494.302927	986.591301	-0.99747	-0.00049305	-3.1935	-0.0015786	-4.191	-0.0020716	494.3011959735942	22.396	0.38479	22.47	22.268	22.653	0.073954					10	7	2	0	0	0	0.024517	1	752	752		19.36	0	1	24603			19223	11229	13478	13504	21647	21647					0.09746941065179726
GHLIPLPLQ	9	Unmodified	_GHLIPLPLQ_					0	0	0		ENST00000229340.9_1_12:120533638-120533773:-|nuORF	ENST00000229340.9_1_12:120533638-120533773:-|nuORF	ENST00000229340.9_1_12:120533638-120533773:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.302927	986.591301	-0.083973	-4.1508E-05	-4.1721	-0.0020623	-4.2561	-0.0021038	494.30084080649226	22.535	0.42004	22.535	22.291	22.711	0	0.0075802	-0.00043669	NaN	26.796	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23194			19224	11229	13478	13504							0.09746941065179726
GHLKVVELLL	10	Unmodified	_GHLKVVELLL_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2694702148438	2	560.858067	1119.70158	-1.2956	-0.00072663	4.3108	0.0024178	3.0152	0.0016911	561.3646942191565	26.11	0.24046	25.946	25.798	26.038	-0.16331					7	7	2	0	0	0	0.03519	1	1275	1275		40.778	5.5774	1	241740			19225	5233	13479	13505	21648	21648					0.1465174133356868
GHLLMHLI	8	Unmodified	_GHLLMHLI_					0	0	0		ENST00000514057.1_1_1:569411-569753:+|nuORF;ENSG00000198899|ENST00000361899|MT-ATP6	ENST00000514057.1_1_1:569411-569753:+|nuORF	ENST00000514057.1_1_1:569411-569753:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.7255554199219	2	467.270573	932.526593	-1.0569	-0.00049384	1.8356	0.00085773	0.77877	0.0003639	467.2709666151645	43.527	0.38741	43.303	43.063	43.45	-0.22428					15	10	2	0	0	0	0.027866	1	4006	4006		33.493	16.788	1	187620			19226	10240	13480	13506	21649	21649					0.05763042987530298
GHLRHDAVH	9	Unmodified	_GHLRHDAVH_					0	0	0		ENST00000597326.5_3_19:6361768-6366330:+|nuORF	ENST00000597326.5_3_19:6361768-6366330:+|nuORF	ENST00000597326.5_3_19:6361768-6366330:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2861328125	2	521.270481	1040.52641	-0.64549	-0.00033648	-0.7972	-0.00041555	-1.4427	-0.00075203	521.269931973646	26.691	0.58666	26.691	26.447	27.034	0					30	13	3	0	0	0	0.024466	1	1381	1381		33.516	1.5607	1	263130			19227	17446	13481	13507	21650	21650					0.007767593118842342
GHLVGLFVLT	10	Unmodified	_GHLVGLFVLT_					0	0	0			REV__ENST00000237937.7_1_9:74969735-74969897:-|nuORF	REV__ENST00000237937.7_1_9:74969735-74969897:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7588500976562	2	528.316035	1054.61752	-0.7668	-0.00040512	-1.0245	-0.00054126	-1.7913	-0.00094637	528.3153121487743	80.513	0.29541	80.535	80.358	80.654	0.021446					12	6	2	0	0	0	0.03519	1	9937	9937		24.203	11.244	1	93808	+		19228	29438	13482	13508	21651	21651					0.09239210236660256
GHLWGSPYLL	10	Unmodified	_GHLWGSPYLL_					0	0	0			REV__ENST00000483439.1_1_6:112375437-112376017:+|nuORF	REV__ENST00000483439.1_1_6:112375437-112376017:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	572.2620239257812	2	571.803291	1141.59203	-0.12487	-7.1399E-05	-0.77763	-0.00044465	-0.90249	-0.00051605	571.8011606474425	43.064	0.46748	42.924	42.595	43.063	-0.13929					17	12	2	0	0	0	0.03519	1	3995	3995		30.504	7.4612	1	89950	+		19229	33510	13483	13509	21652	21652					0.026897357142161127
GHMADIRIKLR	11	Unmodified	_GHMADIRIKLR_					0	0	0			REV__nc|ENSG00000079739|P36871-2|PGM1	REV__nc|ENSG00000079739|P36871-2|PGM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2572326660156	3	437.255563	1308.74486	0.70758	0.0003094	3.373	0.0014749	4.0806	0.0017843	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.0371	1	12068	12068		28.577	1.827	1	1350500	+		19230	36482	13484	13510	21653	21653					0.10283607839187425
GHMDRLGY	8	Unmodified	_GHMDRLGY_					0	0	0		NRDE2|p.R692H|1|0.07|ENSG00000119720|chr14:90290375-90290375|C/T|missense_variant	NRDE2|p.R692H|1|0.07|ENSG00000119720|chr14:90290375-90290375|C/T|missense_variant	NRDE2|p.R692H|1|0.07|ENSG00000119720|chr14:90290375-90290375|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7644348144531	2	474.721444	947.428335	-0.46967	-0.00022296	-3.0768	-0.0014606	-3.5465	-0.0016836	474.7197932168578	28.2	0.89906	27.955	27.635	28.534	-0.24524					50	21	3	0	0	0	0.027866	1	1685	1685		19.36	0	1	2099900			19231	18888	13485	13511	21654	21654					-0.047481853282988595
GHMVHVPGEV	10	Unmodified	_GHMVHVPGEV_					0	0	0		ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENST00000538236.1_1_12:123345767-123346160:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.26708984375	2	531.263476	1060.5124	5.0857	0.0027019	3.1284	0.001662	8.2141	0.0043639	531.2649994682295	17.196	0.32663	17.256	17.127	17.454	0.06036					17	10	2	0	0	0	1.1005	1	108	108		10.866	0	1	86450			19232	16388	13486	13512	21655	21655					-0.015436542314091639
GHNAELRQV	9	Unmodified	_GHNAELRQV_					0	0	0			REV__ENSG00000170955|ENST00000303927|CAVIN3	REV__ENSG00000170955|ENST00000303927|CAVIN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2720947265625	2	512.270147	1022.52574	0.51992	0.00026634	1.1858	0.00060744	1.7057	0.00087378	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	0.85329	1	13718	13718		35.618	0.41757	1	6752000	+		19233	26523	13487	13513	21656	21656					0.015379198721802823
GHNKKVSGI	9	Unmodified	_GHNKKVSGI_					0	0	0			REV__ENSG00000130052|ENST00000374599|STARD8	REV__ENSG00000130052|ENST00000374599|STARD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.27203369140625	2	470.272158	938.529764	-1.142	-0.00053707	1.1969	0.00056286	0.054838	2.5789E-05	470.27264567680317	91.314	1.5131	91.165	90.609	92.122	-0.1487					100	35	5	0	0	0	0.84115	1	11229	11229		36.447	2.2742	1	5837400	+		19234	23078	13488	13514	21657	21657					0.05804009365908769
GHNKLFRR	8	Unmodified	_GHNKLFRR_					0	0	0		chr12:65838569-65951383|497|92.62|0.92|6.66|+|1|HMGA2,HMGA2|1	chr12:65838569-65951383|497|92.62|0.92|6.66|+|1|HMGA2,HMGA2|1	chr12:65838569-65951383|497|92.62|0.92|6.66|+|1|HMGA2,HMGA2|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.2982177734375	2	514.299042	1026.58353	0.55643	0.00028617	-2.5444	-0.0013086	-1.988	-0.0010224	514.2974943917296	95.261	0.95751	95.138	94.684	95.642	-0.12251					58	21	4	0	0	0	0.94517	1	11752	11752		45.952	11.779	1	1848500			19235	327	13489	13515	21658	21658					0.07130226588265032
GHPKNQWI	8	Unmodified	_GHPKNQWI_					0	0	0			REV__nc|ENSG00000117640|Q9H019-2|MTFR1L	REV__nc|ENSG00000117640|Q9H019-2|MTFR1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.25836181640625	2	490.259051	978.503549	-0.68729	-0.00033695	-1.6168	-0.00079263	-2.3041	-0.0011296	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	1.0133	1	13125	13125		35.201	1.6851	1	5001000	+		19236	36601	13490	13516	21659	21659					0.013437401944315752
GHPQAVPAPPP	11	Unmodified	_GHPQAVPAPPP_					0	0	0			REV__ENSG00000185818|ENST00000423729|NAT8L	REV__ENSG00000185818|ENST00000423729|NAT8L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2850952148438	2	534.285266	1066.55598	-0.37302	-0.0001993	-1.2699	-0.00067851	-1.6429	-0.0008778	534.2845398871997	105.79	0.63905	105.79	105.54	106.18	0.00015259					52	22	3	0	0	0	0.99846	1	13492	13492		37.159	0	1	294350	+		19237	27799	13491	13517	21660	21660					0.025362785373545194
GHPRLLAGAP	10	Unmodified	_GHPRLLAGAP_					0	0	0			REV__ENST00000482899.1_1_7:150737010-150738273:+|nuORF	REV__ENST00000482899.1_1_7:150737010-150738273:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.31512451171875	2	494.787976	987.561398	-0.77233	-0.00038214	0.36665	0.00018141	-0.40568	-0.00020072	494.7882962367621	81.148	0.3611	81.172	80.968	81.329	0.023903					15	8	2	0	0	0	0.03519	1	9998	9998		17.365	0	1	78467	+		19238	33497	13492	13518	21661	21661					0.06712002119843419
GHPSPLPLPLG	11	Unmodified	_GHPSPLPLPLG_					0	0	0			REV__SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|32|3|sense	REV__SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|32|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.843994140625	2	542.811116	1083.60768	2.9498	0.0016012	2.2392	0.0012155	5.189	0.0028166	542.8120482697502	17.658	0.19814	17.658	17.498	17.697	0					6	3	2	0	0	0	0.024812	1	183	183		21.96	1.013	1	30939	+		19239	37616	13493	13519	21662	21662					0.06922022231287883
GHQRWYSH	8	Unmodified	_GHQRWYSH_					0	0	0			REV__ENSG00000161509|ENST00000293190|GRIN2C	REV__ENSG00000161509|ENST00000293190|GRIN2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3168334960938	2	535.749382	1069.48421	-0.76211	-0.0004083	2.2171	0.0011878	1.455	0.00077949	535.7504551365801	20.499	0.98939	20.276	20.02	21.009	-0.22344					27	19	2	0	0	0	0.027866	1	599	599		60.294	17.898	1	28239	+		19240	25384	13494	13520	21663	21663					-0.04775216096504664
GHQTRAGRPCS	11	Unmodified	_GHQTRAGRPCS_					0	0	0			REV__ENSG00000125650|ENST00000245810|PSPN	REV__ENSG00000125650|ENST00000245810|PSPN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.2822265625	2	585.283263	1168.55197	-0.67361	-0.00039425	0.48936	0.00028641	-0.18425	-0.00010784	585.2835500400347	51.122	1.4935	50.846	50.48	51.974	-0.27643					69	39	4	0	0	0	0.58492	1	5269	5269		70.816	3.3225	1	7690500	+		19241	22829	13495	13521	21664	21664					-0.025561342279843302
GHRCHHGKCV	10	Unmodified	_GHRCHHGKCV_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3;nc|ENSG00000184347|O75094-2|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.25439453125	2	567.263819	1132.51308	-0.37427	-0.00021231	1.794	0.0010177	1.4197	0.00080536	567.2646627041204	31.046	0.40958	30.805	30.585	30.995	-0.24109					22	9	3	0	0	0	0.03519	1	2021	2021		44.117	13.799	1	294510			19242	9328	13496	13522	21665	21665					-0.047871380633523586
GHRFINHI	8	Unmodified	_GHRFINHI_					0	0	0		ENST00000564085.5_1_16:77769737-77775844:+|nuORF;NUDT7|p.R165C|1|0.11|ENSG00000140876|chr16:77741726-77741726|C/T|missense_variant;nc|ENSG00000140876|P0C024-2|NUDT7;ENSG00000140876|ENST00000268533|NUDT7	ENST00000564085.5_1_16:77769737-77775844:+|nuORF	ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2962646484375	2	497.272493	992.530432	-0.15361	-7.6386E-05	-1.5412	-0.0007664	-1.6948	-0.00084278	497.2715798294811	69.109	0.41489	69.124	68.865	69.28	0.015121					18	10	2	0	0	0	0.027866	1	8246	8246		40.573	18.613	1	215690			19243	16880	13497	13523	21666	21666					0.03386848805587306
GHRLKAALSA	10	Unmodified	_GHRLKAALSA_					0	0	0		chr4:88522029-88532969|214|20.29|0.1|7.62|-|1|TE_info:MLT2A2,MLT2A2_dup1020,ERVL,LTR,donor,-,88532969,88533429|PYURF,None|6	chr4:88522029-88532969|214|20.29|0.1|7.62|-|1|TE_info:MLT2A2,MLT2A2_dup1020,ERVL,LTR,donor,-,88532969,88533429|PYURF,None|6	chr4:88522029-88532969|214|20.29|0.1|7.62|-|1|TE_info:MLT2A2,MLT2A2_dup1020,ERVL,LTR,donor,-,88532969,88533429|PYURF,None|6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.77099609375	2	512.306532	1022.59851	0.44453	0.00022773	-0.29268	-0.00014994	0.15184	7.7791E-05	512.3062860901283	20.129	0.58437	19.906	19.533	20.117	-0.22344					24	11	3	0	0	0	0.03519	1	445	445		26.693	4.733	1	191740			19244	397	13498	13524	21667	21667					0.08811673665593389
GHRPQLAEL	9	Unmodified	_GHRPQLAEL_					0	0	0		nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7855529785156	2	510.78289	1019.55123	0.14923	7.6222E-05	1.6149	0.00082488	1.7642	0.00090111	510.7832387561055	87.105	1.0762	87.069	86.692	87.769	-0.035355					44	25	3	0	0	0	0.29158	1	10932	10932		76.774	5.4784	1	1076100			19245	18133	13499	13525	21668	21668					0.04223394394614388
GHRVSGVFH	9	Unmodified	_GHRVSGVFH_					0	0	0		chr5:151568951-151591165|417|25.09|0.0|21.26|-|1|FAT2,FAT2|1	chr5:151568951-151591165|417|25.09|0.0|21.26|-|1|FAT2,FAT2|1	chr5:151568951-151591165|417|25.09|0.0|21.26|-|1|FAT2,FAT2|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7739562988281	2	498.262125	994.509697	-0.44757	-0.00022301	-2.8542	-0.0014222	-3.3018	-0.0016452	498.2611923766728	26.953	0.38335	26.94	26.786	27.17	-0.012983					10	9	2	0	0	0	0.024412	1	1403	1403		31.955	0	1	71572			19246	401	13500	13526	21669	21669					0.012222584259461655
GHSAFSVALI	10	Unmodified	_GHSAFSVALI_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2904968261719	2	501.274367	1000.53418	0.7358	0.00036884	4.1784	0.0020945	4.9142	0.0024634	501.27619415546087	86.106	0.17218	86.106	86.042	86.214	0					5	3	2	0	0	0	0.03519	1	10814	10814		51.335	31.975	1	49233			19247	5246	13501	13527	21670	21670					0.03393473788821666
GHSEKLPLIL	10	Unmodified	_GHSEKLPLIL_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8302001953125	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	0.98754	1	11123	11123		47.657	5.2612	1	4967900			19248	6595	13502	13528	21671	21671					0.10094577919812764
GHSEKLPLIL	10	Unmodified	_GHSEKLPLIL_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8299560546875	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.88896	1	10589	10589		54.776	15.523	1	1748900			19249	6595	13502	13528	21672	21672					0.10094577919812764
GHSKKKLR	8	Unmodified	_GHSKKKLR_					0	0	0			REV__ENST00000262041.5_1_7:15726102-15726198:-|nuORF	REV__ENST00000262041.5_1_7:15726102-15726198:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.3039245605469	2	477.303793	952.593033	0.39644	0.00018922	-0.58687	-0.00028012	-0.19043	-9.0894E-05	477.3034128087534	18.903	0.88469	18.773	18.55	19.435	-0.13031					41	17	4	0	0	0	0.96769	1	332	332		42.396	5.237	1	610590	+		19250	29645	13503	13529	21673	21673					0.11483994873799475
GHSLHETST	9	Unmodified	_GHSLHETST_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.7672424316406	2	484.725238	967.435923	-0.12833	-6.2204E-05	0.25237	0.00012233	0.12404	6.0126E-05	484.72523584407605	27.196	0.42365	27.039	26.802	27.225	-0.15664					19	9	3	0	0	0	0.024205	1	1449	1449		63.306	0	1	181690			19251	4299	13504	13530	21674	21674					-0.049097545270569753
GHSLPGVLE	9	Unmodified	_GHSLPGVLE_					0	0	0		ENST00000525139.5_1_11:26581321-26620424:+|nuORF	ENST00000525139.5_1_11:26581321-26620424:+|nuORF	ENST00000525139.5_1_11:26581321-26620424:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7447204589844	2	454.745442	907.476331	0.44258	0.00020126	-1.8786	-0.00085427	-1.436	-0.00065301	454.7444987549907	101.14	1.784	101.14	100.7	102.48	0					105	40	5	0	0	0	0.98128	1	12908	12908		24.203	0	1	4485300			19252	16084	13505	13531	21675	21675					0.01889211863374385
GHSLRQGRG	9	Unmodified	_GHSLRQGRG_					0	0	0			REV__nc|ENSG00000137094|O75953-5|DNAJB5	REV__nc|ENSG00000137094|O75953-5|DNAJB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.7672424316406	2	484.262656	966.51076	-0.019978	-9.6748E-06	-2.649	-0.0012828	-2.6689	-0.0012925	484.25802662178376	27.327	1.0094	27.17	26.715	27.724	-0.15664					63	23	5	0	0	0	0.80658	1	1449	1449		38.806	8.3025	1	3021700	+		19253	36698	13506	13532	21676	21676					0.026164727948639666
GHSLRRVGD	9	Unmodified	_GHSLRRVGD_					0	0	0			REV__ENST00000292377.3_1_7:99768105-99769260:-|nuORF	REV__ENST00000292377.3_1_7:99768105-99769260:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7710876464844	2	498.770314	995.526075	0.43234	0.00021564	0.90087	0.00044933	1.3332	0.00066497	498.77066535088994	104.85	1.772	104.85	104.16	105.93	0					146	51	5	0	0	0	0.89441	1	13494	13494		32.812	1.2826	1	5167900	+		19254	29949	13507	13533	21677	21677					0.028133395920463045
GHSRKKANIAI	11	Unmodified	_GHSRKKANIAI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8564453125	2	597.856921	1193.69929	-2.5283	-0.0015116	1.9886	0.0011889	-0.53969	-0.00032266	598.3599525204835	90.759	2.4584	90.759	89.27	91.729	0					148	58	3	0	0	0	1.0238	1	11454	11454		31.53	0	1	2275200			19255	7244	13508	13534	21678	21678					0.11018705648461946
GHSRKKANIAI	11	Unmodified	_GHSRKKANIAI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.855712890625	2	597.856921	1193.69929	-1.6739	-0.0010008	0.44776	0.00026769	-1.2261	-0.00073306	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	0.95124	1	11681	11681		47.657	0	1	4454900			19256	7244	13508	13534	21679	21679					0.11018705648461946
GHSRKKANIAI	11	Unmodified	_GHSRKKANIAI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.856689453125	2	597.856921	1193.69929	-1.0361	-0.00061944	-0.20101	-0.00012018	-1.2371	-0.00073961	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	0.99553	1	11765	11765		37.812	4.9991	1	4942300			19257	7244	13508	13534	21680	21680					0.11018705648461946
GHSRKKANIAI	11	Unmodified	_GHSRKKANIAI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	597.856921	1193.69929	-0.56215	-0.00033608	-0.78641	-0.00047016	-1.3486	-0.00080624	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	0.99553	1	11386	11386		37.812	3.639	1	5880700			19258	7244	13508	13534	21681	21681					0.11018705648461946
GHSRKKANIAI	11	Unmodified	_GHSRKKANIAI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.85595703125	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0017	2	11323	11323;11502		36.447	4.9169	1	5598500			19259	7244	13508	13534	21682;21683	21682					0.11018705648461946
GHSWEPEGF	9	Unmodified	_GHSWEPEGF_					0	0	0		ENST00000306085.10_3_7:100734508-100734568:+|nuORF	ENST00000306085.10_3_7:100734508-100734568:+|nuORF	ENST00000306085.10_3_7:100734508-100734568:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2670288085938	2	523.222331	1044.43011	-0.79224	-0.00041452	-2.6673	-0.0013956	-3.4596	-0.0018101	523.2207528312078	26.764	0.54551	26.764	26.447	26.993	0					12	12	2	0	0	0	0.024466	1	1404	1404		25.45	0.94616	1	22503			19260	11998	13509	13535	21684	21684					-0.09032853038729627
GHTAQLGTFR	10	Unmodified	_GHTAQLGTFR_					0	0	0			REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3273315429688	2	544.285797	1086.55704	-0.56159	-0.00030567	0.53336	0.0002903	-0.028232	-1.5366E-05	544.2858251690129	23.271	0.85773	23.091	22.836	23.694	-0.17989					32	19	4	0	0	0	0.03519	1	949	949		17.468	0.99486	1	308380	+		19261	32495	13510	13536	21685	21685					0.01722492906287698
GHTAQLGTFR	10	Unmodified	_GHTAQLGTFR_					0	0	0			REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.285797	1086.55704	-0.96818	-0.00052697	-1.916	-0.0010429	-2.8842	-0.0015698	544.7871651568988	22.621	0.23811	22.546	22.363	22.602	-0.075296	-0.34205	-0.0017558	NaN	17.468	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18212	+		19262	32495	13510	13536							0.01722492906287698
GHTAQLGTFR	10	Unmodified	_GHTAQLGTFR_					0	0	0			REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.285797	1086.55704	-0.011761	-6.4012E-06	1.1555	0.00062894	1.1438	0.00062254	544.2855326171397	23.102	1.0368	22.9	22.361	23.398	-0.20193	0.012343	0.0015878	NaN	17.468	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242650	+		19263	32495	13510	13536							0.01722492906287698
GHTAQLGTFR	10	Unmodified	_GHTAQLGTFR_					0	0	0			REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	REV__ENST00000438568.6_1_1:150459892-150460383:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.285797	1086.55704	0.91388	0.00049741	-0.96309	-0.0005242	-0.04921	-2.6784E-05	544.2850898323805	23.206	0.52653	23.015	22.758	23.284	-0.19117	0.12698	-0.00071845	NaN	17.468	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280110	+		19264	32495	13510	13536							0.01722492906287698
GHTGPRSK	8	Unmodified	_GHTGPRSK_					0	0	0			REV__ENST00000487903.5_1_13:113536502-113536748:+|nuORF	REV__ENST00000487903.5_1_13:113536502-113536748:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.22802734375	2	420.227751	838.440949	-0.56007	-0.00023536	0.77407	0.00032528	0.214	8.9928E-05	420.228084419357	25.706	1.2327	25.706	25.173	26.406	0					55	29	3	0	0	0	0.95679	1	1263	1263		44.117	9.9443	1	1112900	+		19265	33627	13511	13537	21686	21686					0.015265941262214255
GHTQPLCES	9	Unmodified	_GHTQPLCES_					0	0	0		ENST00000377016.8_1_6:29595320-29599222:-|nuORF	ENST00000377016.8_1_6:29595320-29599222:-|nuORF	ENST00000377016.8_1_6:29595320-29599222:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.2156066894531	2	486.216192	970.41783	0.2656	0.00012914	-3.2864	-0.0015979	-3.0208	-0.0014688	486.2145138310673	101.61	2.0628	101.48	100.65	102.72	-0.12576					137	50	3	0	0	0	0.98697	1	12753	12753		23.042	1.0826	1	181460			19266	13194	13512	13538	21687	21687					-0.06856212773402603
GHTVALLRGH	10	Unmodified	_GHTVALLRGH_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7713623046875	2	530.804157	1059.59376	-1.5703	-0.00083353	0.3114	0.00016529	-1.2589	-0.00066824	530.8042260272226	24.738	0.40479	24.691	24.442	24.847	-0.047148					15	8	2	0	0	0	0.03519	1	1085	1085		51.335	3.6781	1	138380	+		19267	24185	13513	13539	21688	21688					0.0663478952285459
GHVAVLGHSL	10	Unmodified	_GHVAVLGHSL_					0	0	0		ENST00000530079.5_1_16:70030360-70072929:-|nuORF;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;ENST00000533264.5_1_16:70069634-70099679:-|nuORF	ENST00000530079.5_1_16:70030360-70072929:-|nuORF	ENST00000530079.5_1_16:70030360-70072929:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.23876953125	2	495.279983	988.545414	-0.27336	-0.00013539	0.74696	0.00036995	0.4736	0.00023456	495.2801357319578	31.363	0.57433	31.178	30.865	31.44	-0.18503					28	14	3	0	0	0	0.03519	1	2050	2050		12.207	0	1	470770			19268	16221	13514	13540	21689	21689					0.050682958829384006
GHVEDSQVSLP	11	Unmodified	_GHVEDSQVSLP_					0	0	0		ENST00000397226.2_2_2:37423715-37423799:+|nuORF	ENST00000397226.2_2_2:37423715-37423799:+|nuORF	ENST00000397226.2_2_2:37423715-37423799:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.3340454101562	2	584.28566	1166.55677	-0.004675	-2.7316E-06	4.2994	0.0025121	4.2947	0.0025093	584.2887905591293	84.716	0.83517	84.557	84.063	84.898	-0.15868					32	19	3	0	0	0	0.024774	1	10285	10285		46.457	0	1	323310			19269	13588	13515	13541	21690	21690					-0.019849716042244836
GHVELYTIS	9	Unmodified	_GHVELYTIS_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.3033447265625	2	509.763832	1017.51311	-0.46761	-0.00023837	-3.4586	-0.0017631	-3.9262	-0.0020014	509.7618156353499	26.929	0.71276	26.929	26.573	27.286	0					44	17	4	0	0	0	0.024523	1	1401	1401		29.15	10.887	1	507740			19270	5360	13516	13542	21691	21691					0.0050546368928507945
GHVEYQIK	8	Unmodified	_GHVEYQIK_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25177001953125	2	487.258717	972.50288	-1.3892	-0.00067692	-2.0436	-0.00099574	-3.4328	-0.0016727	487.25781065306614	29.777	0.28421	29.777	29.652	29.936	0					9	6	2	0	0	0	0.027866	1	1850	1850		52.299	15.14	1	37300	+		19271	28427	13517	13543	21692	21692					0.015529007547115725
GHVFGPLYSHL	11	Unmodified	_GHVFGPLYSHL_					0	0	0		nc|ENSG00000184321|Q9H342|OR51J1	nc|ENSG00000184321|Q9H342|OR51J1	nc|ENSG00000184321|Q9H342|OR51J1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.55010986328125	3	409.548741	1225.62439	0.43796	0.00017937	2.3394	0.0009581	2.7774	0.0011375	409.54962954510665	53.113	0.88559	52.986	52.552	53.437	-0.12705					67	22	4	0	0	0	0.99129	1	5537	5537		38.754	0.94209	1	4178500			19272	18585	13518	13544	21693	21693					0.020605231172567073
GHVLKWGSEE	10	Unmodified	_GHVLKWGSEE_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.3101806640625	2	571.285463	1140.55637	0.23046	0.00013166	0.38184	0.00021814	0.61229	0.00034979	571.2856425339027	74.774	0.21307	74.511	74.318	74.531	-0.26326					7	4	2	0	0	0	0.03519	1	8813	8813		47.657	0	1	115450	+		19273	21219	13519	13545	21694	21694					-0.008283465334216089
GHVLSKVLA	9	Unmodified	_GHVLSKVLA_					0	0	0		ENSG00000011201|ENST00000262648|ANOS1;ENST00000481896.1_1_X:8503574-8504959:-|nuORF	ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2872009277344	2	462.287277	922.560001	0.38011	0.00017572	-0.24801	-0.00011465	0.1321	6.1069E-05	462.2869698110445	22.4	0.60016	22.211	21.959	22.559	-0.18894					26	12	3	0	0	0	0.72875	1	806	806		44.117	1.7207	1	644640			19274	889	13520	13546	21695	21695					0.09562368031095048
GHVPRPLRAS	10	Unmodified	_GHVPRPLRAS_					0	0	0		ENST00000513117.1_1_5:6633544-6656205:+|nuORF;ENST00000510531.5_1_5:6633544-6644998:+|nuORF;ENST00000274192.6_2_5:6633463-6652038:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.316650390625	2	545.317432	1088.62031	0.29621	0.00016153	-1.7677	-0.00096396	-1.4715	-0.00080243	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.1088	1	10605	10605		31.53	2.3803	1	4888900			19275	11679	13521	13547	21696	21696					0.07954478414171717
GHVPRPLRAS	10	Unmodified	_GHVPRPLRAS_					0	0	0		ENST00000513117.1_1_5:6633544-6656205:+|nuORF;ENST00000510531.5_1_5:6633544-6644998:+|nuORF;ENST00000274192.6_2_5:6633463-6652038:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.317432	1088.62031	-0.4393	-0.00023956	-1.1099	-0.00060523	-1.5492	-0.00084479	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0992	1	10556	10556		32.812	2.3088	1	5204600			19276	11679	13521	13547	21697	21697					0.07954478414171717
GHVTSERSQR	10	Unmodified	_GHVTSERSQR_					0	0	0			REV__ENST00000325870.2_1_9:22447414-22447717:+|nuORF	REV__ENST00000325870.2_1_9:22447414-22447717:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	577.7968139648438	2	578.794518	1155.57448	-0.852	-0.00049313	-2.7922	-0.0016161	-3.6442	-0.0021092	579.2952913338055	42.432	0.46168	42.432	42.289	42.75	0					16	12	2	0	0	0	0.03519	1	3929	3929		49.536	26.494	1	93611	+		19277	30394	13522	13548	21698	21698					0.0029178844129091885
GHWGGLAAWV	10	Unmodified	_GHWGGLAAWV_					0	0	0			REV__ENST00000473155.1_1_10:74033708-74033819:+|nuORF	REV__ENST00000473155.1_1_10:74033708-74033819:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2785034179688	2	527.266876	1052.5192	-0.94507	-0.00049831	3.3379	0.00176	2.3928	0.0012617	527.2683801463035	84.507	1.5777	84.435	84.091	85.669	-0.072777					74	37	3	0	0	0	0.03519	1	10584	10584		26.796	2.5934	1	758200	+		19278	30135	13523	13549	21699	21699					-0.004959732885481571
GHWIPKGGLH	10	Unmodified	_GHWIPKGGLH_					0	0	0		ENST00000530261.1_1_11:77884604-77884706:+|nuORF	ENST00000530261.1_1_11:77884604-77884706:+|nuORF	ENST00000530261.1_1_11:77884604-77884706:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8179931640625	2	551.30125	1100.58795	-1.2111	-0.00066768	4.3393	0.0023923	3.1282	0.0017246	551.8039683501722	39.316	0.17822	39.218	39.091	39.269	-0.098755					5	4	2	0	0	0	0.03519	1	3356	3356		35.618	14.671	1	44281			19279	16229	13524	13550	21700	21700					0.041676910111846155
GHWKEGKM	8	Unmodified	_GHWKEGKM_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7770690917969	2	486.739637	971.464721	-1.467	-0.00071404	3.0883	0.0015032	1.6213	0.00078915	486.74116798914133	30.067	0.61927	30.141	29.759	30.378	0.074314					19	14	2	0	0	0	0.027866	1	1804	1804		33.516	0	1	114000			19280	732	13525	13551	21701	21701					-0.02215308431595986
GIACSYGRV	9	Unmodified	_GIACSYGRV_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2332763671875	2	463.231645	924.448736	0.043451	2.0128E-05	2.9839	0.0013822	3.0273	0.0014023	463.23291896746935	53.757	0.91853	53.757	53.474	54.393	0					50	25	3	0	0	0	0.18915	1	5849	5849		90.777	13.93	1	2442300			19281	10271	13526	13552	21702	21702					-0.01651014668505013
GIACSYGRV	9	Unmodified	_GIACSYGRV_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.231645	924.448736	-0.22952	-0.00010632	3.278	0.0015185	3.0485	0.0014122	463.2330394239998	53.869	0.84883	53.722	53.383	54.232	-0.14723	-0.038306	-0.00032318	NaN	90.777	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2280300			19282	10271	13526	13552							-0.01651014668505013
GIACSYGRV	9	Unmodified	_GIACSYGRV_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	463.231645	924.448736	0.18268	8.4623E-05	2.926	0.0013554	3.1087	0.00144	463.2328416606378	53.621	0.7412	53.716	53.407	54.148	0.095669	-0.043614	-0.00064933	NaN	90.777	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2492200			19283	10271	13526	13552							-0.01651014668505013
GIACSYGRV	9	Unmodified	_GIACSYGRV_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.231645	924.448736	-1.0179	-0.00047152	4.6353	0.0021472	3.6174	0.0016757	463.2336484436898	53.9	0.7584	53.764	53.496	54.255	-0.13617	0.0043506	0.00093424	NaN	90.777	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2187600			19284	10271	13526	13552							-0.01651014668505013
GIACSYGRV	9	Unmodified	_GIACSYGRV_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.231645	924.448736	-0.099599	-4.6137E-05	3.6256	0.0016795	3.526	0.0016333	463.23322870270283	54.06	0.84942	53.815	53.559	54.408	-0.2453	0.054898	-1.1986E-06	NaN	90.777	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2485300			19285	10271	13526	13552							-0.01651014668505013
GIACSYGRV	9	Unmodified	_GIACSYGRV_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.231645	924.448736	-0.21994	-0.00010188	3.7564	0.0017401	3.5365	0.0016382	463.23321427390204	53.983	0.57304	53.785	53.523	54.096	-0.19739	0.025393	0.00012004	NaN	90.777	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2620700			19286	10271	13526	13552							-0.01651014668505013
GIAFMTLAGL	10	Unmodified	_GIAFMTLAGL_					0	0	0		ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.30718994140625	2	497.275521	992.536489	-0.61088	-0.00030378	2.7467	0.0013659	2.1358	0.0010621	497.27699907054796	83.182	0.72451	83.209	82.96	83.684	0.02655					22	16	2	0	0	0	0.03519	1	10292	10292		50.025	11.218	1	100430			19287	6117	13527	13553	21703	21703					0.039921862022538335
GIAFMTLAGL	10	Unmodified	_GIAFMTLAGL_					0	0	0		ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.275521	992.536489	0.29354	0.00014597	1.7448	0.00086767	2.0384	0.0010136	497.2765992502491	83.337	0.63853	83.247	83.043	83.682	-0.090454	0.018993	-0.00043728	NaN	47.916	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92586			19288	6117	13527	13553							0.039921862022538335
GIAGRVGPE	9	Unmodified	_GIAGRVGPE_					0	0	0			REV__nc|ENSG00000124749|Q96P44-2|COL21A1	REV__nc|ENSG00000124749|Q96P44-2|COL21A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.870849609375	2	428.237784	854.461016	1.9186	0.00082162	-1.5183	-0.00065021	0.40029	0.00017142	428.23703638624636	36.429	0.83285	36.231	35.943	36.776	-0.19829					25	20	2	0	0	0	0.024	1	2859	2859		21.96	3.6355	1	153440	+		19289	22783	13528	13554	21704	21704					0.027963450661900424
GIAGRVGPE	9	Unmodified	_GIAGRVGPE_					0	0	0			REV__nc|ENSG00000124749|Q96P44-2|COL21A1	REV__nc|ENSG00000124749|Q96P44-2|COL21A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	428.237784	854.461016	-0.54722	-0.00023434	1.2334	0.00052818	0.68616	0.00029384	428.23825218679485	36.513	0.72519	36.513	36.162	36.887	0	0.13001	0.00072075	NaN	21.96	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465230	+		19290	22783	13528	13554							0.027963450661900424
GIAHGAVVK	9	Unmodified	_GIAHGAVVK_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2715759277344	2	426.25852	850.502486	-0.99868	-0.0004257	2.7382	0.0011672	1.7395	0.00074147	426.26001565729285	39.35	0.56549	39.251	39.163	39.728	-0.098755					27	15	2	0	0	0	0.024258	1	3380	3380		44.531	0	1	166350			19291	3925	13529	13555	21705	21705					0.07125525825517798
GIAKGNVALK	10	Unmodified	_GIAKGNVALK_					0	0	0		nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2;nc|ENSG00000204290|Q9UIR0-3|BTNL2;nc|ENSG00000204290|Q9UIR0-2|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7740173339844	2	485.805834	969.597115	0.023055	1.12E-05	-0.24679	-0.00011989	-0.22373	-0.00010869	485.80547496269037	27.683	0.45658	27.527	27.307	27.764	-0.15664					16	10	2	0	0	0	0.03519	1	1494	1494		58.782	8.7574	1	188210			19292	10323	13530	13556	21706	21706					0.11110039576840336
GIALLEENL	9	Unmodified	_GIALLEENL_					0	0	0		chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|85	chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|85	chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|85	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2915344238281	2	486.274032	970.533512	0.8922	0.00043386	-0.77728	-0.00037797	0.11492	5.5882E-05	486.27353508304964	59.426	0.70893	59.426	59.07	59.779	0					39	18	3	0	0	0	0.024263	1	6836	6836		51.335	0	1	1965000			19293	368	13531	13557	21707	21707					0.0470663434908829
GIALYDKAL	9	Unmodified	_GIALYDKAL_					0	0	0		ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2882080078125	2	482.279118	962.543683	1.1447	0.00055208	-1.6213	-0.00078191	-0.47655	-0.00022983	482.2782945669238	63.293	0.32037	63.347	63.126	63.447	0.054104					11	8	2	0	0	0	0.024506	1	7299	7299		10.866	0	1	83335			19294	795	13532	13558	21708	21708					0.060912420743079565
GIALYDKAL	9	Unmodified	_GIALYDKAL_					0	0	0		ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	482.279118	962.543683	0.2974	0.00014343	-0.66841	-0.00032236	-0.37101	-0.00017893	482.27892895335185	63.449	0.45698	63.221	63.055	63.512	-0.22773	-0.083845	0.00013459	NaN	10.866	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179520			19295	795	13532	13558							0.060912420743079565
GIALYDKAL	9	Unmodified	_GIALYDKAL_					0	0	0		ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	482.279118	962.543683	-0.1881	-9.0717E-05	-0.60284	-0.00029074	-0.79094	-0.00038145	482.2790337149578	63.54	0.57227	63.347	63.029	63.601	-0.19243	0.041999	0.00019783	NaN	10.866	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173040			19296	795	13532	13558							0.060912420743079565
GIAYLRDN	8	Unmodified	_GIAYLRDN_					0	0	0			REV__ENSG00000197705|ENST00000359358|KLHL14	REV__ENSG00000197705|ENST00000359358|KLHL14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2619934082031	2	461.243067	920.47158	-0.95508	-0.00044052	1.4219	0.00065586	0.46685	0.00021533	461.2435159516419	28.841	1.1491	28.841	28.037	29.186	0					48	27	3	0	0	0	0.027866	1	1640	1640		16.473	0	1	877470	+		19297	28338	13533	13559	21709	21709					0.00816327720622212
GIEQLQELL	9	Unmodified	_GIEQLQELL_					0	0	0			REV__ENSG00000068400|ENST00000376423|GRIPAP1;REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	REV__ENSG00000068400|ENST00000376423|GRIPAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7929077148438	2	521.792589	1041.57063	-0.85276	-0.00044496	1.1779	0.00061462	0.32514	0.00016965	521.7931687068102	45.171	0.68624	45.022	44.796	45.483	-0.1488					52	19	4	0	0	0	0.48817	1	4347	4347		60.118	0.18749	1	2760100	+		19298	20378;33241	13534	13560	21710	21710					0.0515030589485832
GIEVQGRLL	9	Unmodified	_GIEVQGRLL_					0	0	0		ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2593688964844	2	492.795466	983.57638	-0.11087	-5.4636E-05	-1.5764	-0.00077683	-1.6872	-0.00083147	492.7947914260583	37.377	0.21459	37.314	37.127	37.342	-0.063385					8	5	2	0	0	0	0.023817	1	2997	2997		71.296	0	1	87390			19299	2429	13535	13561	21711	21711					0.08393449197183145
GIFGGHIRSV	10	Unmodified	_GIFGGHIRSV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7928466796875	2	521.793258	1041.57196	-1.0637	-0.00055501	-0.19989	-0.0001043	-1.2636	-0.00065931	521.7930815428471	44.999	0.92319	44.999	44.657	45.58	0					61	26	4	0	0	0	0.75651	1	4337	4337		63.534	3.4156	1	2635400			19300	2478	13536	13562	21712	21712					0.05283984774268902
GIFGGHIRSV	10	Unmodified	_GIFGGHIRSV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7930297851562	2	521.793258	1041.57196	-0.85276	-0.00044496	-0.10365	-5.4083E-05	-0.95641	-0.00049905	521.7931687068102	45.171	0.68624	45.022	44.796	45.483	-0.1488					52	19	4	0	0	0	0.67616	1	4358	4358		68.846	10.616	1	2760100			19301	2478	13536	13562	21713	21713					0.05283984774268902
GIFKNFLKIN	10	Unmodified	_GIFKNFLKIN_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MSMS	OPSCC_40_ClassI_Rep-3	6	597.3536376953125	2	597.355691	1192.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.8	1	103.63	103.13	104.13	-0.16791								0	0	0	0.76324	1	12898	12898		23.042	0.46283	1		+		19302	23653	13537	13563	21714	21714					0.10818857190793096
GIFPKIMPK	9	Unmodified	_GIFPKIMPK_					0	0	0		nc|ENSG00000165584|Q99909-2|SSX3;nc|ENSG00000290708|Q7RTT3|SSX9P;ENSG00000165584|ENST00000298396|SSX3	nc|ENSG00000165584|Q99909-2|SSX3	nc|ENSG00000165584|Q99909-2|SSX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.80078125	2	515.809531	1029.60451	-0.028552	-1.4727E-05	1.5927	0.00082151	1.5641	0.00080678	515.8104021995747	36.897	0.90435	36.833	36.294	37.198	-0.063389					49	23	3	0	0	0	0.024294	1	2914	2914		29.15	0	1	576730			19303	7434	13538	13564	21715	21715					0.09089055852905403
GIFVWFFG	8	Unmodified	_GIFVWFFG_					0	0	0			REV__COLEC10|p.R206W|1|0.5|ENSG00000184374|chr8:119105973-119105973|C/T|missense_variant	REV__COLEC10|p.R206W|1|0.5|ENSG00000184374|chr8:119105973-119105973|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.31549072265625	2	486.752539	971.490525	0.1061	5.1646E-05	1.9977	0.00097238	2.1038	0.001024	486.7533668905618	69.88	0.36444	69.88	69.629	69.993	0					15	8	2	0	0	0	0.027866	1	8426	8426		16.705	0	1	362560	+		19304	19516	13539	13565	21716	21716					0.0036390908232988295
GIGFRGVK	8	Unmodified	_GIGFRGVK_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.7499694824219	2	417.253237	832.491922	-0.90106	-0.00037597	-0.92872	-0.00038751	-1.8298	-0.00076348	417.25290613876064	61.193	0.76362	61.017	60.483	61.246	-0.1761					24	18	2	0	0	0	0.027866	1	6842	6842		38.806	5.2906	1	403950	+		19305	24799	13540	13566	21717	21717					0.06897543171089637
GIGGTYLKII	10	Unmodified	_GIGGTYLKII_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|45|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|45|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|45|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2925415039062	2	517.815867	1033.61718	0.065435	3.3883E-05	-1.4132	-0.00073178	-1.3478	-0.0006979	517.8152177499611	54.78	0.61154	54.55	54.351	54.963	-0.23087					23	16	2	0	0	0	0.03519	1	5863	5863		42.864	5.0528	1	210810			19306	17887	13541	13567	21718	21718					0.10171790516801593
GIGHTTGKP	9	Unmodified	_GIGHTTGKP_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7801513671875	2	434.237784	866.461016	0.14053	6.1022E-05	-0.018159	-7.8852E-06	0.12237	5.3137E-05	434.2376550509937	36.082	0.58502	35.865	35.58	36.165	-0.21661					30	16	3	0	0	0	0.024021	1	2776	2776		58.782	19.976	1	738710			19307	8161	13542	13568	21719	21719					0.02244345066196729
GIGPGPADLID	11	Unmodified	_GIGPGPADLID_					0	0	0		ENSG00000141378|ENST00000393038|PTRH2	ENSG00000141378|ENST00000393038|PTRH2	ENSG00000141378|ENST00000393038|PTRH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.78033447265625	2	512.769114	1023.52368	-0.42528	-0.00021807	-2.2544	-0.001156	-2.6797	-0.0013741	512.7680846742637	92.976	1.328	92.976	92.101	93.429	0					57	31	4	0	0	0	0.024752	1	11808	11808		40.778	7.2626	1	269460			19308	5486	13543	13569	21720	21720					0.01285446343717922
GIGSAHRGQ	9	Unmodified	_GIGSAHRGQ_					0	0	0			REV__ENSG00000151748|ENST00000324679|SAV1	REV__ENSG00000151748|ENST00000324679|SAV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.2906188964844	2	441.730658	881.446762	-0.9046	-0.00039959	3.2876	0.0014523	2.383	0.0010527	441.73392718449446	44.628	0.18158	44.383	44.256	44.438	-0.2444					5	4	2	0	0	0	0.024477	1	4156	4156		35.618	11.416	1	45448	+		19309	24794	13544	13570	21721	21721					0.0012969263790409968
GIIASSHVR	9	Unmodified	_GIIASSHVR_					0	0	0		ENST00000392551.6_1_2:175346676-175351788:-|nuORF	ENST00000392551.6_1_2:175346676-175351788:-|nuORF	ENST00000392551.6_1_2:175346676-175351788:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2712097167969	2	470.272158	938.529764	-0.16956	-7.9741E-05	-0.023819	-1.1201E-05	-0.19338	-9.0942E-05	470.2721071142879	88.694	1.1279	88.556	88.274	89.402	-0.13743					51	26	3	0	0	0	0.92825	1	10828	10828		30.504	1.3541	1	387220			19310	13419	13545	13571	21722	21722					0.05804009365908769
GIIIMMTLCD	10	Unmodified	_GIIIMMTLCD_					0	0	0		nc|ENSG00000073849|P15907-2|ST6GAL1;ENSG00000073849|ENST00000169298|ST6GAL1	nc|ENSG00000073849|P15907-2|ST6GAL1	nc|ENSG00000073849|P15907-2|ST6GAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.2720336914062	2	555.273806	1108.53306	0.71884	0.00039915	-3.7011	-0.0020551	-2.9822	-0.001656	555.2715934922333	95.763	1.136	95.765	95.438	96.574	0.0020752					72	26	5	0	0	0	0.62679	1	12114	12114		73.975	5.1879	1	3888100			19311	1518	13546	13572	21723	21723					-0.01686567958267915
GIIPLSAIST	10	Unmodified	_GIIPLSAIST_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.29046630859375	2	486.292225	970.569897	-0.49887	-0.00024259	-3.6235	-0.0017621	-4.1224	-0.0020047	486.29060350488385	27.569	2.2712	27.556	27.101	29.372	-0.012983					129	57	5	0	0	0	1.0541	1	1564	1564		38.806	3.1879	1	37106000			19312	1101;15776	13547	13573	21724	21724					0.08343511245789159
GIITKKDVLRH	11	Unmodified	_GIITKKDVLRH_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.264404296875	3	427.266345	1278.7772	-0.58513	-0.00025001	-3.9587	-0.0016914	-4.5439	-0.0019414	427.2647783278071	53.901	2.7621	53.765	53.393	56.155	-0.13616					276	78	6	0	0	0	1.0563	1	5674	5674		23.378	0.81632	1	50487000			19313	1507	13548	13574	21725	21725					0.14896718513841734
GIITKKNILEH	11	Unmodified	_GIITKKNILEH_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.59320068359375	3	422.590717	1264.75032	0.6876	0.00029057	4.3102	0.0018214	4.9978	0.002112	422.5924533889246	49.865	3.5983	49.684	49.002	52.6	-0.18071					269	94	5	0	0	0	1.0123	2	5014	5003;5014		34.087	2.4522	1	10769000			19314	18166	13549	13575	21726;21727	21727					0.12853609902663266
GIITKNMQCTI	11	Unmodified	_GIITKNMQCTI_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.887939453125	3	407.882515	1220.62571	0.16845	6.8708E-05	3.8687	0.001578	4.0372	0.0016467	407.8839410311846	33.449	0.65839	33.249	33.016	33.675	-0.20019					31	16	3	0	0	0	0.024724	1	2412	2412		9.2118	0	1	588150	+		19315	23693	13550	13576	21728	21728					0.024226530994837958
GIITQYMV	8	Oxidation (M)	_GIITQYM(Oxidation (M))V_		GIITQYM(1)V		GIITQYM(56)V	0	0	1		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.74322509765625	2	470.744053	939.473554	0.17856	8.4054E-05	-2.7942	-0.0013154	-2.6157	-0.0012313	470.7420883022026	47.302	1.0541	47.302	46.852	47.906	0					72	30	4	0	0	0	0.845	1	4739	4739		55.504	6.0627	1	2322500			19316	5322	13551	13577	21729	21729		216			0.0013962041421109461
GIITQYMV	8	Oxidation (M)	_GIITQYM(Oxidation (M))V_					0	0	1		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	470.744053	939.473554	0.53705	0.00025281	-2.917	-0.0013731	-2.3799	-0.0011203	470.74193010154687	47.486	1.1151	47.333	46.776	47.891	-0.15301	-0.00043851	0.00033295	NaN	55.504	73	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2273600			19317	5322	13551	13577				216			0.0013962041421109461
GIITQYMV	8	Oxidation (M)	_GIITQYM(Oxidation (M))V_					0	0	1		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.744053	939.473554	-0.2356	-0.00011091	-3.3553	-0.0015795	-3.5909	-0.0016904	470.74227750477064	47.264	0.99692	47.323	46.803	47.8	0.059093	-0.0096316	-7.9741E-05	NaN	55.504	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2310700			19318	5322	13551	13577				216			0.0013962041421109461
GIITQYMV	8	Oxidation (M)	_GIITQYM(Oxidation (M))V_					0	0	1		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	470.744053	939.473554	-0.0058927	-2.774E-06	-3.1179	-0.0014677	-3.1238	-0.0014705	470.74216632667446	47.42	0.92167	47.323	47.008	47.93	-0.096653	-0.0098194	0.00014378	NaN	55.504	47	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747510			19319	5322	13551	13577				216			0.0013962041421109461
GIITQYMV	8	Oxidation (M)	_GIITQYM(Oxidation (M))V_					0	0	1		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.744053	939.473554	-0.20167	-9.4936E-05	-3.3654	-0.0015842	-3.5671	-0.0016792	470.7422334464873	47.571	0.81959	47.384	47.043	47.863	-0.18684	0.051281	-8.9242E-05	NaN	55.504	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	787520			19320	5322	13551	13577				216			0.0013962041421109461
GIIVQQKKV	9	Unmodified	_GIIVQQKKV_					0	0	0		ENST00000260803.8_1_3:137881392-137882236:-|nuORF	ENST00000260803.8_1_3:137881392-137882236:-|nuORF	ENST00000260803.8_1_3:137881392-137882236:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3157043457031	2	506.829309	1011.64407	0.40271	0.00020411	-1.1949	-0.0006056	-0.79216	-0.00040149	506.8286388727089	69.572	0.62314	69.279	69.01	69.633	-0.29291					38	15	3	0	0	0	0.024457	1	8315	8315		29.15	12.676	1	724380			19321	11455	13552	13578	21730	21730					0.13870899127994107
GIKSPRKSP	9	Unmodified	_GIKSPRKSP_					0	0	0			REV__nc|ENSG00000167123|Q5T4B2-2|CERCAM	REV__nc|ENSG00000167123|Q5T4B2-2|CERCAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2904052734375	2	485.295633	968.576714	-0.53928	-0.00026171	0.45445	0.00022054	-0.084836	-4.1171E-05	485.2956344167095	27.821	0.95399	27.816	27.545	28.499	-0.0042019					31	23	2	0	0	0	0.024292	1	1525	1525		58.782	18.209	1	200900	+		19322	26110	13553	13579	21731	21731					0.09116868917044485
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.2723999023438	2	555.271687	1108.52882	-0.12461	-6.9191E-05	1.0301	0.00057199	0.9055	0.0005028	555.2720868858215	95.818	1.8019	95.818	95.434	97.236	0					91	41	4	0	0	0	0.47726	4	12225	12201;12213;12225;12238		90.777	16.802	1	4111100	+		19323	20124	13554	13580	21732;21733;21734;21735	21734					-0.021102945843495036
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.2723999023438	2	555.271687	1108.52882	0.1343	7.4571E-05	0.61557	0.00034181	0.74987	0.00041638	555.2718673168333	95.704	1.4427	95.708	95.347	96.79	0.0033798					77	33	4	0	0	0	0.47726	4	12165	12142;12153;12165;12190		90.777	8.4716	1	4785900	+		19324	20124	13554	13580	21736;21737;21738;21739	21738					-0.021102945843495036
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.2722778320312	2	555.271687	1108.52882	0.71884	0.00039915	0.11616	6.4502E-05	0.83501	0.00046365	555.2715934922333	95.763	1.136	95.765	95.438	96.574	0.0020752					72	26	5	0	0	0	0.47726	4	12125	12125;12137;12151;12164		90.777	24.347	1	3888100	+		19325	20124	13554	13580	21740;21741;21742;21743	21740					-0.021102945843495036
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.2725219726562	2	555.271687	1108.52882	0.029386	1.6317E-05	0.64145	0.00035618	0.67084	0.0003725	555.2719283793053	95.712	0.97937	95.575	95.243	96.222	-0.13689					38	22	2	0	0	0	0.67706	3	11822	11809;11822;11834		68.787	12.066	1	2078300	+		19326	20124	13554	13580	21744;21745;21746	21745					-0.021102945843495036
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.2720947265625	2	555.271687	1108.52882	0.64837	0.00036002	-0.23701	-0.0001316	0.41136	0.00022842	555.2715603303271	95.745	1.1929	95.623	95.203	96.396	-0.12251					66	27	5	0	0	0	0.67706	3	11824	11824;11836;11849		68.787	8.4929	1	2058400	+		19327	20124	13554	13580	21747;21748;21749	21747					-0.021102945843495036
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2721557617188	2	555.271687	1108.52882	-0.43337	-0.00024064	1.3032	0.0007236	0.86978	0.00048296	555.2721837114427	95.823	1.1105	95.666	95.269	96.379	-0.15646					60	25	4	0	0	0	0.57825	1	11826	11826		79.451	5.4763	1	1827300	+		19328	20124	13554	13580	21750	21750					-0.021102945843495036
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	555.271687	1108.52882	0.1343	7.4571E-05	0.61557	0.00034181	0.74987	0.00041638	555.2718673168333	95.704	1.4427	95.708	95.347	96.79	0.0033798	0.015221	1.5264E-06	NaN	90.777	77	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4785900	+		19329	20124	13554	13580							-0.021102945843495036
GILDYDAETL	10	Unmodified	_GILDYDAETL_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	555.271687	1108.52882	0.029386	1.6317E-05	0.64145	0.00035618	0.67084	0.0003725	555.2719283793053	95.712	0.97937	95.575	95.243	96.222	-0.13689	-0.11758	3.0262E-05	NaN	90.777	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2078300	+		19330	20124	13554	13580							-0.021102945843495036
GILGALKPNI	10	Unmodified	_GILGALKPNI_					0	0	0			REV__ENSG00000101144|ENST00000395863|BMP7	REV__ENSG00000101144|ENST00000395863|BMP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2348327636719	2	498.316035	994.617516	-0.1007	-5.018E-05	-0.57592	-0.00028699	-0.67662	-0.00033717	498.315656524368	57.017	0.75255	56.792	56.386	57.138	-0.2248					22	19	2	0	0	0	0.03519	1	6215	6215		18.324	3.4595	1	150000	+		19331	21188	13555	13581	21751	21751					0.11999210236660929
GILGIQPPSV	10	Unmodified	_GILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.7922668457031	2	490.792392	979.570232	-0.34257	-0.00016813	0.35178	0.00017265	0.0092102	4.5203E-06	490.7924061880983	80.445	1.9349	80.445	79.323	81.258	0					100	46	4	0	0	0	0.59716	3	9984	9984;9995;10006		77.318	24.381	1	1728500			19332	10490	13556	13582	21752;21753;21754	21752					0.07962930965663872
GILGIQPPSV	10	Unmodified	_GILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.79217529296875	2	490.792392	979.570232	-0.96999	-0.00047606	0.91849	0.00045079	-0.051499	-2.5275E-05	490.79274025999854	80.73	1.5691	80.578	79.504	81.073	-0.15168					61	37	2	0	0	0	0.69662	3	9988	9978;9988;10000		67.494	7.1399	1	1798800			19333	10490	13556	13582	21755;21756;21757	21756					0.07962930965663872
GILGIQPPSV	10	Unmodified	_GILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.7923583984375	2	490.792392	979.570232	-0.99532	-0.0004885	1.1016	0.00054063	0.10623	5.2138E-05	490.7927522298876	80.506	1.5629	80.527	79.561	81.124	0.021439					96	37	4	0	0	0	0.45418	2	9924	9912;9924		93.143	24.356	1	1553900			19334	10490	13556	13582	21758;21759	21759					0.07962930965663872
GILGIQPPSV	10	Unmodified	_GILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.792392	979.570232	-0.347	-0.00017031	0.34047	0.0001671	-0.0065381	-3.2088E-06	490.7924086073262	80.505	0.72836	80.267	79.958	80.686	-0.23784	-0.18988	-0.00024846	NaN	93.143	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173480			19335	10490	13556	13582							0.07962930965663872
GILGIQPPSV	10	Unmodified	_GILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.792392	979.570232	0.39738	0.00019503	-0.63226	-0.00031031	-0.23487	-0.00011527	490.791990702134	80.661	0.85841	80.454	79.969	80.828	-0.20633	-0.0028523	-0.0012033	NaN	93.143	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136170			19336	10490	13556	13582							0.07962930965663872
GILGIQPPSV	10	Unmodified	_GILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.792392	979.570232	0.1738	8.5301E-05	0.11104	5.4499E-05	0.28484	0.0001398	490.79224403736305	80.618	0.81995	80.472	79.913	80.733	-0.146	0.014523	-0.00047366	NaN	93.143	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143300			19337	10490	13556	13582							0.07962930965663872
GILLGLGELH	10	Unmodified	_GILLGLGELH_					0	0	0		ENST00000600795.1_1_11:77884868-77885513:+|nuORF	ENST00000600795.1_1_11:77884868-77885513:+|nuORF	ENST00000600795.1_1_11:77884868-77885513:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.30419921875	2	511.305667	1020.59678	-0.37038	-0.00018938	-0.30313	-0.00015499	-0.67352	-0.00034437	511.305459622028	66.032	1.0057	66.062	65.382	66.388	0.030106					74	28	4	0	0	0	1.1112	1	7796	7796		16.473	1.809	1	15087000			19338	17503	13557	13583	21760	21760					0.08730619856999056
GILLRLPQVAM	11	Unmodified	_GILLRLPQVAM_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000466101.1_1_3:156877139-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.872314453125	2	605.870651	1209.72675	-0.92863	-0.00056263	3.1491	0.0019079	2.2205	0.0013453	605.8723603924029	98.583	1.08	98.583	98.233	99.313	0					66	24	4	0	0	0	1.0442	1	12623	12623		26.693	2.1737	1	1252900			19339	10630	13558	13584	21761	21761					0.13027472864473566
GILLRLPQVAM	11	Unmodified	_GILLRLPQVAM_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000466101.1_1_3:156877139-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8717041015625	2	605.870651	1209.72675	-0.099911	-6.0533E-05	2.5327	0.0015345	2.4328	0.001474	605.8719802701046	98.576	1.0775	98.586	98.19	99.268	0.010231					67	24	4	0	0	0	1.0442	1	12545	12545		26.693	2.1737	1	1246300			19340	10630	13558	13584	21762	21762					0.13027472864473566
GILLRLPQVAM	11	Unmodified	_GILLRLPQVAM_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000466101.1_1_3:156877139-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8720092773438	2	605.870651	1209.72675	0.020307	1.2303E-05	2.3728	0.0014376	2.3932	0.0014499	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	1.018	1	12224	12224		32.812	12.816	1	1147100			19341	10630	13558	13584	21763	21763					0.13027472864473566
GILLTKKL	8	Unmodified	_GILLTKKL_					0	0	0		nc|ENSG00000028528|Q13596-3|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.287353515625	2	443.310221	884.605889	-0.37453	-0.00016603	0.6944	0.00030783	0.31986	0.0001418	443.310444633901	35.371	0.42191	35.155	34.874	35.296	-0.21555					18	10	2	0	0	0	0.027866	1	2676	2676		26.796	1.3459	1	146230			19342	18040	13559	13585	21764	21764					0.15897013213316313
GILLYSGFF	9	Unmodified	_GILLYSGFF_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B;REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7779846191406	2	508.776211	1015.53787	0.74896	0.00038105	2.1875	0.0011129	2.9364	0.001494	508.7772732195747	19.294	0.44092	19.294	19.07	19.511	0					18	8	3	0	0	0	0.60698	1	393	393		52.299	6.3472	1	117420	+		19343	20226;33049	13560	13586	21765	21765					0.030721435626787752
GILLYSGFF	9	Unmodified	_GILLYSGFF_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B;REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	508.776211	1015.53787	0.74896	0.00038105	2.1875	0.0011129	2.9364	0.001494	508.7772732195747	19.294	0.44092	19.294	19.07	19.511	0	-0.039129	-9.354E-05	NaN	52.299	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117420	+		19344	20226;33049	13560	13586							0.030721435626787752
GILLYSGFF	9	Unmodified	_GILLYSGFF_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B;REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.776211	1015.53787	-0.22833	-0.00011617	2.909	0.00148	2.6806	0.0013638	508.7778405846062	19.491	0.39264	19.372	19.151	19.543	-0.11872	0.039129	0.00064062	NaN	52.299	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55292	+		19345	20226;33049	13560	13586							0.030721435626787752
GILNVILGGV	10	Unmodified	_GILNVILGGV_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8044738769531	2	477.80276	953.590967	0.45518	0.00021749	0.38806	0.00018542	0.84324	0.0004029	477.80276552768555	91.165	0.66103	91.177	90.783	91.444	0.011276					46	15	4	0	0	0	0.75995	1	11443	11443		63.306	0	1	2744700	+		19346	24429	13561	13587	21766	21766					0.11231521345337114
GILPALEVIL	10	Unmodified	_GILPALEVIL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2660522460938	2	519.333893	1036.65323	-0.38486	-0.00019987	-2.9014	-0.0015068	-3.2862	-0.0017066	519.3322487012033	51.041	0.81373	50.892	50.626	51.439	-0.14916					53	22	3	0	0	0	0.03519	1	5429	5429		23.042	0	1	1372200			19347	2247	13562	13588	21767	21767					0.13637247693668542
GILPPMLP	8	Unmodified	_GILPPMLP_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B;ENST00000551111.1_1_12:50024390-50026982:+|nuORF;nc|ENSG00000110844|Q6NWY9-4|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.240234375	2	419.248775	836.482997	0.23268	9.755E-05	3.0318	0.0012711	3.2645	0.0013686	419.2500125700966	37.204	0.81905	36.995	36.726	37.545	-0.2092					36	20	4	0	0	0	0.027866	1	2955	2955		24.504	0	1	94249			19348	3067	13563	13589	21768	21768					0.0582143349040507
GILPWGIL	8	Unmodified	_GILPWGIL_					0	0	0			REV__ENST00000539663.5_1_12:21661040-21668177:+|nuORF	REV__ENST00000539663.5_1_12:21661040-21668177:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.78021240234375	2	434.768189	867.521825	-0.12815	-5.5714E-05	0.3374	0.00014669	0.20925	9.0976E-05	434.7685679801406	36.213	0.20523	36.251	36.133	36.338	0.038044					8	5	2	0	0	0	0.027866	1	2789	2789		33.493	0	1	107570	+		19349	21940	13564	13590	21769	21769					0.08276482116434636
GILRLNPRKV	10	Unmodified	_GILRLNPRKV_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.2990112304688	2	583.380032	1164.74551	-1.6537	-0.00096473	-3.7351	-0.002179	-5.3888	-0.0031437	583.3774190970928	44.294	0.92656	44.05	43.829	44.756	-0.2444					63	24	3	0	0	0	0.03519	1	4083	4083		35.618	19.145	1	598600	+		19350	36232	13565	13591	21770	21770					0.16972770550546556
GILRLNPRKV	10	Unmodified	_GILRLNPRKV_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.298583984375	2	583.380032	1164.74551	-1.5425	-0.00089988	-3.8933	-0.0022713	-5.4358	-0.0031711	583.3774212179809	44.377	0.95816	44.157	43.826	44.785	-0.21939					61	25	3	0	0	0	0.03519	1	4078	4078		40.778	25.136	1	1159300	+		19351	36232	13565	13591	21771	21771					0.16972770550546556
GILSVTPTV	9	Unmodified	_GILSVTPTV_					0	0	0			REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.25531005859375	2	443.765843	885.517133	-0.5506	-0.00024434	1.2736	0.00056518	0.723	0.00032084	443.7663101565061	53.367	0.36301	53.462	53.266	53.629	0.095669					16	9	2	0	0	0	0.023775	1	5719	5719		47.916	14.4	1	246020	+		19352	26476	13566	13592	21772	21772					0.06979553182998188
GILSVTPTV	9	Unmodified	_GILSVTPTV_					0	0	0			REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.765843	885.517133	0.058936	2.6154E-05	0.40217	0.00017847	0.46111	0.00020462	443.76582760648074	53.589	0.2141	53.589	53.404	53.618	0	0.16418	-0.00013554	NaN	47.916	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230850	+		19353	26476	13566	13592							0.06979553182998188
GILSVTPTV	9	Unmodified	_GILSVTPTV_					0	0	0			REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.765843	885.517133	-0.43842	-0.00019456	0.77111	0.00034219	0.33268	0.00014763	443.7661865877796	53.456	0.60447	53.329	53.066	53.67	-0.12705	-0.096467	0.00019191	NaN	47.916	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475360	+		19354	26476	13566	13592							0.06979553182998188
GILSVTPTV	9	Unmodified	_GILSVTPTV_					0	0	0			REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.765843	885.517133	-0.16966	-7.5291E-05	0.32019	0.00014209	0.15053	6.6801E-05	443.76587508755915	53.648	0.55375	53.403	53.163	53.717	-0.2453	-0.022185	-0.00020829	NaN	47.916	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431210	+		19355	26476	13566	13592							0.06979553182998188
GILSVTPTV	9	Unmodified	_GILSVTPTV_					0	0	0			REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.765843	885.517133	0.03818	1.6943E-05	0.33153	0.00014712	0.36971	0.00016407	443.7658649957199	53.54	0.46215	53.343	53.126	53.588	-0.19739	-0.082545	-0.00019823	NaN	47.916	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428680	+		19356	26476	13566	13592							0.06979553182998188
GILTVGPLV	9	Unmodified	_GILTVGPLV_					0	0	0		ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7799377441406	2	434.778754	867.542954	0.21274	9.2496E-05	3.02	0.001313	3.2327	0.0014055	434.7799429591237	46.948	1.1699	46.948	46.515	47.685	0					97	32	4	0	0	0	0.90698	1	4676	4676		31.955	1.4512	1	3627000			19357	16645	13567	13593	21773	21773					0.10388447425282266
GILTVGPLV	9	Unmodified	_GILTVGPLV_					0	0	0		ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7801208496094	2	434.778754	867.542954	-0.77622	-0.00033748	4.009	0.001743	3.2328	0.0014056	434.780341833039	38.941	1.099	38.776	38.554	39.653	-0.16458					92	29	4	0	0	0	0.98128	1	3314	3314		24.203	0	1	3470400			19358	16645	13567	13593	21774	21774					0.10388447425282266
GILTVGPLV	9	Unmodified	_GILTVGPLV_					0	0	0		ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7799072265625	2	434.778754	867.542954	-0.43363	-0.00018853	3.7697	0.001639	3.3361	0.0014505	434.7802551861221	40.423	1.9513	40.273	39.513	41.464	-0.1497					168	51	4	0	0	0	0.88411	1	3515	3515		33.516	3.674	1	6063000			19359	16645	13567	13593	21775	21775					0.10388447425282266
GILTVGPLV	9	Unmodified	_GILTVGPLV_					0	0	0		ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7799377441406	2	434.778754	867.542954	0.064442	2.8018E-05	3.0928	0.0013447	3.1572	0.0013727	434.7799380163852	46.595	1.8193	46.499	45.887	47.706	-0.096649					172	49	5	0	0	0	0.78069	2	4495	4495;4507		40.573	5.3719	1	5911100			19360	16645	13567	13593	21776;21777	21776					0.10388447425282266
GILTVGPLV	9	Unmodified	_GILTVGPLV_					0	0	0		ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7798767089844	2	434.778754	867.542954	0.14807	6.4377E-05	2.8093	0.0012214	2.9574	0.0012858	434.77981426491095	46.923	1.4792	46.654	46.379	47.858	-0.26939					156	40	5	0	0	0	0.78069	1	4567	4567		40.573	3.4135	1	5703000			19361	16645	13567	13593	21778	21778					0.10388447425282266
GILTVGPLV	9	Unmodified	_GILTVGPLV_					0	0	0		ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7800598144531	2	434.778754	867.542954	0.072718	3.1616E-05	2.8406	0.001235	2.9133	0.0012666	434.77984164352523	46.699	1.5772	46.505	46.165	47.742	-0.19387					162	43	6	0	0	0	0.78069	1	4547	4547		40.573	1.7665	1	7314300			19362	16645	13567	13593	21779	21779					0.10388447425282266
GILVQETGLG	10	Unmodified	_GILVQETGLG_					0	0	0		ENST00000314138.10_1_11:8709525-8709774:+|nuORF	ENST00000314138.10_1_11:8709525-8709774:+|nuORF	ENST00000314138.10_1_11:8709525-8709774:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.77410888671875	2	493.779482	985.544411	-0.60756	-0.0003	-2.2255	-0.0010989	-2.8331	-0.0013989	493.7782995480077	21.219	0.44323	21.219	20.998	21.441	0					15	8	2	0	0	0	0.03519	1	611	611		40.778	0	1	487240			19363	12114	13568	13594	21780	21780					0.05106036723395846
GIPRVKQT	8	Unmodified	_GIPRVKQT_					0	0	0		ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2408752441406	2	449.777077	897.5396	-0.71989	-0.00032379	-0.33152	-0.00014911	-1.0514	-0.0004729	449.7771415315349	23.969	0.8265	23.921	23.571	24.398	-0.047148					27	18	2	0	0	0	0.027866	1	965	965		18.324	0	1	55448			19364	4239	13569	13595	21781	21781					0.08673197371274455
GIPSRSPLKL	10	Unmodified	_GIPSRSPLKL_					0	0	0		ENST00000293829.8_1_17:7347478-7347709:+|nuORF	ENST00000293829.8_1_17:7347478-7347709:+|nuORF	ENST00000293829.8_1_17:7347478-7347709:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.3314208984375	2	534.332216	1066.64988	-1.5436	-0.0008248	0.71852	0.00038393	-0.8251	-0.00044088	534.3325171999976	44.201	0.98843	44.201	43.91	44.898	0					68	28	4	0	0	0	0.80817	1	4193	4193		60.118	3.3972	1	7590700			19365	11808	13570	13596	21782	21782					0.11921997639660731
GIPSRSPLKL	10	Unmodified	_GIPSRSPLKL_					0	0	0		ENST00000293829.8_1_17:7347478-7347709:+|nuORF	ENST00000293829.8_1_17:7347478-7347709:+|nuORF	ENST00000293829.8_1_17:7347478-7347709:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.33203125	2	534.332216	1066.64988	-1.5957	-0.00085266	0.7566	0.00040428	-0.83914	-0.00044838	534.3325393157432	44.417	1.0204	44.272	43.958	44.978	-0.14471					76	29	4	0	0	0	0.66532	1	4199	4199		69.628	2.134	1	6870200			19366	11808	13570	13596	21783	21783					0.11921997639660731
GIQGYHGR	8	Unmodified	_GIQGYHGR_					0	0	0		nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-3|COL13A1;nc|ENSG00000197467|Q5TAT6-8|COL13A1;nc|ENSG00000197467|Q5TAT6-7|COL13A1;nc|ENSG00000197467|Q5TAT6-2|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1;nc|ENSG00000197467|Q5TAT6-6|COL13A1;nc|ENSG00000197467|Q5TAT6|COL13A1;ENSG00000197467|ENST00000645393|COL13A1;nc|ENSG00000197467|Q5TAT6-11|COL13A1;nc|ENSG00000197467|Q5TAT6-10|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	nc|ENSG00000197467|Q5TAT6-9|COL13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.2510070800781	2	444.227751	886.440949	0.14025	6.2303E-05	3.2355	0.0014373	3.3758	0.0014996	444.2291376568749	28.767	0.24999	28.848	28.657	28.907	0.080811					9	5	2	0	0	0	0.027866	1	1642	1642		40.573	26.797	1	303820			19367	10003	13571	13597	21784	21784					-0.006814058737631967
GIQLSTRLTG	10	Unmodified	_GIQLSTRLTG_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3036499023438	2	523.303655	1044.59276	0.35837	0.00018754	-0.25747	-0.00013474	0.1009	5.28E-05	523.3034561801154	100.01	0.80638	99.881	99.471	100.28	-0.13364					42	23	2	0	0	0	1.0545	1	12403	12403		38.754	7.1193	1	1402800	+		19368	33886	13572	13598	21785	21785					0.07224530363259873
GIQSAIGDMW	10	Unmodified	_GIQSAIGDMW_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.73681640625	2	539.255317	1076.49608	-1.0358	-0.00055855	3.9597	0.0021353	2.9239	0.0015768	539.2568260069779	37.404	0.66863	37.195	36.645	37.313	-0.2092					19	16	2	0	0	0	0.03519	1	2929	2929		49.442	28.495	1	80064	+		19369	25323;36836	13573	13599	21786	21786					-0.03910780188175522
GIRLGGSPQ	9	Unmodified	_GIRLGGSPQ_					0	0	0		ENST00000295688.7_1_1:156278830-156278989:-|nuORF	ENST00000295688.7_1_1:156278830-156278989:-|nuORF	ENST00000295688.7_1_1:156278830-156278989:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.266845703125	2	442.751059	883.487565	-0.52827	-0.00023389	-0.21781	-9.6437E-05	-0.74608	-0.00033033	442.75146872070496	29.444	0.19799	29.522	29.368	29.566	0.078346					5	4	2	0	0	0	0.024354	1	1758	1758		23.042	5.6775	1	26090			19370	11828	13574	13600	21787	21787					0.04116033957518539
GIRNREVLNVL	11	Unmodified	_GIRNREVLNVL_					0	0	0			REV__USP13-PEX5L|1|fusion	REV__USP13-PEX5L|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8820190429688	2	641.883136	1281.75172	0.55581	0.00035677	-1.6557	-0.0010628	-1.0999	-0.00070601	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	0.97926	1	12257	12257		41.427	4.9799	1	3344500	+		19371	37764	13575	13601	21788	21788					0.12211243991418996
GIRNREVLNVL	11	Unmodified	_GIRNREVLNVL_					0	0	0			REV__USP13-PEX5L|1|fusion	REV__USP13-PEX5L|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8824462890625	2	641.883136	1281.75172	0.76256	0.00048947	-1.8886	-0.0012122	-1.126	-0.00072277	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0017	1	11878	11878		36.447	0	1	3421300	+		19372	37764	13575	13601	21789	21789					0.12211243991418996
GIRNREVLNVL	11	Unmodified	_GIRNREVLNVL_					0	0	0			REV__USP13-PEX5L|1|fusion	REV__USP13-PEX5L|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8823852539062	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	0.97926	1	11774	11774		41.427	4.9799	1	3453200	+		19373	37764	13575	13601	21790	21790					0.12211243991418996
GIRQLSQSL	9	Unmodified	_GIRQLSQSL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2900085449219	2	501.290548	1000.56654	-0.55827	-0.00027985	0.45222	0.00022669	-0.10605	-5.3163E-05	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.82115	1	10313	10313		37.812	0.65241	1	2156900			19374	2693	13576	13602	21791	21791					0.06628261191815454
GIRTLIEKP	9	Unmodified	_GIRTLIEKP_					0	0	0			REV__RPS6KA1|p.E623K|1|0.15|ENSG00000117676|chr1:26572213-26572213|G/A|missense_variant	REV__RPS6KA1|p.E623K|1|0.15|ENSG00000117676|chr1:26572213-26572213|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8171997070312	2	513.818941	1025.62333	0.14436	7.4175E-05	-1.1009	-0.00056565	-0.95651	-0.00049147	513.8184161292633	72.223	1.7207	72.223	71.795	73.516	0					110	42	4	0	0	0	0.5973	1	8830	8830		52.937	3.4952	1	21011000	+		19375	37450	13577	13603	21792	21792					0.11154308748336916
GISASGGVVSI	11	Unmodified	_GISASGGVVSI_					0	0	0			REV__CON__P07744	REV__CON__P07744	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.76385498046875	2	473.763832	945.513111	-0.2007	-9.5086E-05	0.12354	5.8529E-05	-0.077163	-3.6557E-05	473.7637884054541	34.912	0.63266	34.963	34.64	35.273	0.050255					44	16	3	0	0	0	0.14598	1	2586	2586		104.75	5.3716	1	3261400	+	+	19376	19545	13578	13604	21793	21793					0.03817463689279066
GISFAIHGNF	10	Unmodified	_GISFAIHGNF_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7684326171875	2	531.771991	1061.52943	-1.5846	-0.00084263	0.71459	0.00038	-0.86998	-0.00046263	531.7723135123027	24.693	0.66891	24.646	24.398	25.067	-0.047148					21	14	2	0	0	0	0.03519	1	1121	1121		30.504	14.03	1	1108000			19377	9787	13579	13605	21794	21794					0.0011258964602802735
GISIKINWV	9	Unmodified	_GISIKINWV_					0	0	0			REV__ENST00000328345.7_2_6:99284709-99285063:+|nuORF	REV__ENST00000328345.7_2_6:99284709-99285063:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3078002929688	2	515.30821	1028.60187	-0.89112	-0.0004592	-0.27447	-0.00014143	-1.1656	-0.00060064	515.3079336425991	62.916	0.7856	62.676	62.419	63.204	-0.23926					34	18	2	0	0	0	0.62163	1	7307	7307		51.335	0.14276	1	6154100	+		19378	30431	13580	13606	21795	21795					0.08870923719587154
GISLVLTANVF	11	Unmodified	_GISLVLTANVF_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.32958984375	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.0292	1	11333	11333		30.318	1.1477	1	17705000	+		19379	28096	13581	13607	21796	21796					0.08819158199935373
GITATEKLPD	10	Unmodified	_GITATEKLPD_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2998046875	2	522.782222	1043.54989	-0.60884	-0.00031829	-1.3248	-0.00069257	-1.9336	-0.0010109	523.2837758773296	76.759	0.16502	76.531	76.444	76.609	-0.22843					5	3	2	0	0	0	0.03519	1	9436	9436		45.972	0	1	67065	+		19380	25603	13582	13608	21797	21797					0.02985715515183074
GITNHEPIN	9	Unmodified	_GITNHEPIN_					0	0	0			REV__ENSG00000167196|ENST00000308275|FBXO22	REV__ENSG00000167196|ENST00000308275|FBXO22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2689514160156	2	497.751256	993.487959	-0.82573	-0.00041101	0.55598	0.00027674	-0.26975	-0.00013427	497.7515554120171	36.366	0.42042	36.324	36.032	36.453	-0.042458					15	11	2	0	0	0	0.024374	1	2829	2829		40.778	3.6191	1	124010	+		19381	26117	13583	13609	21798	21798					-0.009045911132830042
GIVDQLDDQ	9	Unmodified	_GIVDQLDDQ_					0	0	0			REV__ENSG00000147687|ENST00000276692|TATDN1	REV__ENSG00000147687|ENST00000276692|TATDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7926025390625	2	501.740554	1001.46655	0.43204	0.00021677	-0.056515	-2.8356E-05	0.37553	0.00018842	501.74018991963425	51.63	0.36362	51.511	51.394	51.758	-0.11875					11	9	2	0	0	0	0.02435	1	5351	5351		51.335	12.083	1	72944	+		19382	24577	13584	13610	21799	21799					-0.03412020932660198
GIVDQLDDQ	9	Unmodified	_GIVDQLDDQ_					0	0	0			REV__ENSG00000147687|ENST00000276692|TATDN1	REV__ENSG00000147687|ENST00000276692|TATDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.79327392578125	2	501.740554	1001.46655	-1.8588	-0.00093262	3.0335	0.0015221	1.1748	0.00058943	502.24356948121704	51.908	0.32131	51.639	51.474	51.795	-0.26904					10	8	2	0	0	0	0.02435	1	5369	5369		60.972	21.719	1	60783	+		19383	24577	13584	13610	21800	21800					-0.03412020932660198
GIVDQLDDQ	9	Unmodified	_GIVDQLDDQ_					0	0	0			REV__ENSG00000147687|ENST00000276692|TATDN1	REV__ENSG00000147687|ENST00000276692|TATDN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.740554	1001.46655	-0.91907	-0.00046113	0.56405	0.00028301	-0.35502	-0.00017813	501.7414183226119	51.526	0.10059	51.613	51.544	51.644	0.087006	0.025709	-0.00066816	NaN	51.335	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50443	+		19384	24577	13584	13610							-0.03412020932660198
GIVGLLVLAMG	11	Unmodified	_GIVGLLVLAMG_					0	0	0		PPFIA1-RNF167|1|fusion;nc|ENSG00000108523|Q9H6Y7-2|RNF167;ENSG00000108523|ENST00000262482|RNF167;ENST00000575524.1_1_17:4846390-4846588:+|nuORF	PPFIA1-RNF167|1|fusion	PPFIA1-RNF167|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7845458984375	2	521.820095	1041.62564	0.71494	0.00037307	2.8581	0.0014914	3.573	0.0018645	521.8214246102434	19.098	0.54322	18.894	18.51	19.053	-0.20371					21	10	3	0	0	0	0.02479	1	330	330		17.365	4.4058	1	24597			19385	18984	13585	13611	21801	21801					0.10649021161771088
GIVIDWAPK	9	Unmodified	_GIVIDWAPK_					0	0	0		nc|ENSG00000260565|Q9NX77|ERVK13-1	nc|ENSG00000260565|Q9NX77|ERVK13-1	nc|ENSG00000260565|Q9NX77|ERVK13-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2828674316406	2	499.78711	997.559667	-0.21954	-0.00010972	-4.1465	-0.0020724	-4.366	-0.0021821	499.78491275767016	37.539	0.80191	37.539	37.269	38.071	0					34	22	3	0	0	0	0.024427	1	3110	3110		26.693	0	1	715610			19386	18782	13586	13612	21802	21802					0.06078948311221666
GIVITPLLLL	10	Unmodified	_GIVITPLLLL_					0	0	0		nc|ENSG00000120519|Q0GE19-4|SLC10A7;nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-4|SLC10A7	nc|ENSG00000120519|Q0GE19-4|SLC10A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.311767578125	2	526.359911	1050.70527	-0.89464	-0.00047091	3.0987	0.001631	2.2041	0.0011601	526.3613494865006	36.189	1.7129	36.147	35.83	37.543	-0.042454					111	46	4	0	0	0	0.03519	1	2944	2944		30.504	18.297	1	821340			19387	3821	13587	13613	21803	21803					0.18194411107424457
GIVITPLLLL	10	Unmodified	_GIVITPLLLL_					0	0	0		nc|ENSG00000120519|Q0GE19-4|SLC10A7;nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-4|SLC10A7	nc|ENSG00000120519|Q0GE19-4|SLC10A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3115844726562	2	526.359911	1050.70527	-0.22422	-0.00011802	2.4273	0.0012776	2.203	0.0011596	526.3610310551626	36.348	1.6563	36.386	36.065	37.721	0.038044					109	44	3	0	0	0	0.03519	1	2916	2916		17.365	10.172	1	849830			19388	3821	13587	13613	21804	21804					0.18194411107424457
GIVKAAESID	10	Unmodified	_GIVKAAESID_					0	0	0		nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7870178222656	2	501.776939	1001.53933	-0.02954	-1.4823E-05	3.0861	0.0015485	3.0565	0.0015337	501.7769107893732	54.826	0.39098	54.924	54.591	54.982	0.098015					15	10	2	0	0	0	0.03519	1	5928	5928		30.318	10.321	1	147520			19389	18601	13588	13614	21805	21805					0.038617328607642776
GIVSLVLTSI	10	Unmodified	_GIVSLVLTSI_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3135681152344	2	501.3157	1000.61685	-0.66841	-0.00033509	0.093159	4.6702E-05	-0.57526	-0.00028838	501.31564040693235	60.35	0.95158	60.174	59.922	60.874	-0.1761					59	23	4	0	0	0	0.42446	1	6730	6730		96.19	5.4138	1	4195100	+		19390	19975	13589	13615	21806	21806					0.11656370796947613
GIWIRWGL	8	Unmodified	_GIWIRWGL_					0	0	0		ENST00000499502.2_1_4:6691089-6692153:-|nuORF	ENST00000499502.2_1_4:6691089-6692153:-|nuORF	ENST00000499502.2_1_4:6691089-6692153:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3135681152344	2	500.789987	999.565421	-0.85364	-0.0004275	-4.4804	-0.0022437	-5.334	-0.0026712	500.7876841596918	60.468	0.7524	60.292	59.922	60.674	-0.1761					44	18	4	0	0	0	0.027866	1	6730	6730		86.935	15.057	1	1589500			19391	15639	13590	13616	21807	21807					0.06562091613557186
GIWLGHVL	8	Unmodified	_GIWLGHVL_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2350158691406	2	447.763438	893.512323	-0.88647	-0.00039693	-3.6464	-0.0016327	-4.5329	-0.0020297	447.76165861680806	37.788	0.65993	37.788	37.343	38.003	0					40	18	3	0	0	0	0.027866	1	3108	3108		43.626	0	1	536510			19392	18758	13591	13617	21808	21808					0.06130713830896184
GIWPLGSAAV	10	Unmodified	_GIWPLGSAAV_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MSMS	OPSCC_39_ClassI_Rep-3	3	485.76947021484375	2	485.77146	969.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.236	1	35.28	34.78	35.78	0.04406								0	0	0	0.74254	1	2642	2642		38.806	0.99462	1				19393	4590	13592	13618	21809	21809					0.04238375277122941
GIYKLDYKAA	10	Unmodified	_GIYKLDYKAA_					0	0	0			REV__ENST00000307241.5_1_12:94942028-94943309:+|nuORF	REV__ENST00000307241.5_1_12:94942028-94943309:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.782470703125	2	571.316232	1140.61791	-2.0311	-0.0011604	1.5086	0.00086189	-0.52252	-0.00029852	571.3170076449676	90.73	0.71521	90.73	90.214	90.929	0					21	16	2	0	0	0	0.03519	1	11475	11475		39.253	19.893	1	120060	+		19394	26661	13593	13619	21810	21810					0.053225851658453394
GIYSVMASEL	10	Unmodified	_GIYSVMASEL_					0	0	0		ENST00000558500.5_1_15:99796138-99837514:+|nuORF;ENST00000560213.1_1_15:99796138-99796378:+|nuORF	ENST00000558500.5_1_15:99796138-99837514:+|nuORF	ENST00000558500.5_1_15:99796138-99837514:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.2628173828125	2	535.26535	1068.51615	-1.156	-0.00061878	-0.27669	-0.0001481	-1.4327	-0.00076688	535.2635421356249	92.021	1.1098	92.021	91.685	92.794	0					90	26	5	0	0	0	0.65054	2	11652	11652;11663		71.296	7.0884	1	2255900			19395	16751	13594	13620	21811;21812	21811					-0.015370292482202785
GIYSVMASEL	10	Unmodified	_GIYSVMASEL_					0	0	0		ENST00000558500.5_1_15:99796138-99837514:+|nuORF;ENST00000560213.1_1_15:99796138-99796378:+|nuORF	ENST00000558500.5_1_15:99796138-99837514:+|nuORF	ENST00000558500.5_1_15:99796138-99837514:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.2631225585938	2	535.26535	1068.51615	-0.79805	-0.00042717	-0.14503	-7.7632E-05	-0.94309	-0.0005048	535.263456307167	91.99	1.364	91.982	91.622	92.986	-0.0082855					94	32	5	0	0	0	0.65054	2	11617	11617;11629		71.296	12.514	1	2032100			19396	16751	13594	13620	21813;21814	21813					-0.015370292482202785
GIYSVMASEL	10	Unmodified	_GIYSVMASEL_					0	0	0		ENST00000558500.5_1_15:99796138-99837514:+|nuORF;ENST00000560213.1_1_15:99796138-99796378:+|nuORF	ENST00000558500.5_1_15:99796138-99837514:+|nuORF	ENST00000558500.5_1_15:99796138-99837514:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.262939453125	2	535.26535	1068.51615	-0.21246	-0.00011372	-1.0353	-0.00055417	-1.2478	-0.0006679	535.2630639152295	92.047	1.3576	92.056	91.615	92.973	0.0094147					96	32	5	0	0	0	0.65054	2	11576	11576;11587		71.296	15.791	1	2303100			19397	16751	13594	13620	21815;21816	21815					-0.015370292482202785
GIYTLQNNL	9	Unmodified	_GIYTLQNNL_					0	0	0		nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2977905273438	2	518.277106	1034.53966	-0.81313	-0.00042143	-1.5372	-0.0007967	-2.3503	-0.0012181	518.2764762245254	102.81	0.18857	102.81	102.73	102.92	0					6	4	2	0	0	0	0.022083	1	13177	13177		99.375	0	1	133470			19398	3647	13595	13621	21817	21817					0.023771525806068894
GIYTLQNNL	9	Unmodified	_GIYTLQNNL_					0	0	0		nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	nc|ENSG00000283761|Q9Y2D2-3|SLC35A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.298095703125	2	518.277106	1034.53966	-0.17503	-9.0716E-05	0.50482	0.00026164	0.32979	0.00017092	518.2772501687584	102.7	0.34586	102.71	102.54	102.89	0.0054245					13	8	2	0	0	0	0.022083	1	13130	13130		99.375	5.3685	1	318790			19399	3647	13595	13621	21818	21818					0.023771525806068894
GKAAGIWK	8	Unmodified	_GKAAGIWK_					0	0	0		nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	nc|ENSG00000173805|P54257-3|HAP1	nc|ENSG00000173805|P54257-3|HAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.23846435546875	2	415.747788	829.481023	0.048759	2.0271E-05	0.074736	3.1071E-05	0.1235	5.1343E-05	415.7460763618062	21.795	0.33533	21.795	21.63	21.965	0					11	6	2	0	0	0	0.027866	1	716	716		25.45	0	1	11687			19400	8412	13596	13622	21819	21819					0.05946140796800137
GKAAGIWKT	9	Unmodified	_GKAAGIWKT_					0	0	0		nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	nc|ENSG00000173805|P54257-3|HAP1	nc|ENSG00000173805|P54257-3|HAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2582092285156	2	466.271627	930.528701	1.2622	0.00058851	-4.2467	-0.0019801	-2.9845	-0.0013916	466.26981101475906	72.408	0.97614	72.417	72.131	73.107	0.0097733					31	23	2	0	0	0	0.024484	1	8706	8706		23.523	0	1	82120			19401	8412	13597	13623	21820	21820					0.060657949969822766
GKAEIIPGV	9	Unmodified	_GKAEIIPGV_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.26641845703125	2	442.26601	882.517468	-0.70766	-0.00031297	-0.32615	-0.00014425	-1.0338	-0.00045722	442.2656669175265	39.39	1.2996	39.414	38.608	39.908	0.023727					97	35	4	0	0	0	0.77768	1	3289	3289		40.778	1.5253	1	10233000			19402	9207	13598	13624	21821	21821					0.07150972902854846
GKAFNRKD	8	Unmodified	_GKAFNRKD_					0	0	0		nc|ENSG00000090612|Q14587-2|ZNF268;ENST00000536899.6_1_12:133758152-133781113:+|nuORF;ENSG00000090612|ENST00000536435|ZNF268	nc|ENSG00000090612|Q14587-2|ZNF268	nc|ENSG00000090612|Q14587-2|ZNF268	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2591857910156	2	468.256508	934.498464	0.45302	0.00021213	3.6852	0.0017256	4.1382	0.0019378	468.2581184061034	44.961	1.3043	45.005	44.654	45.958	0.043877					83	37	5	0	0	0	0.87148	1	4266	4266		53.351	2.016	1	4582600			19403	1938	13599	13625	21822	21822					0.0285943633180068
GKAFSKVSTLI	11	Unmodified	_GKAFSKVSTLI_					0	0	0		nc|ENSG00000160321|O43345-2|ZNF208;ZNF208|p.G1177Afs*13|1|0.13|ENSG00000160321|chr19:21971506-21971506|T/-|frameshift_variant;ENSG00000160321|ENST00000397126|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8430786132812	2	575.845156	1149.67576	-0.82546	-0.00047534	-2.9075	-0.0016743	-3.7329	-0.0021496	575.8433114529906	88.92	2.4021	88.92	87.573	89.975	0					191	57	4	0	0	0	0.63824	1	11201	11201		67.494	2.0283	1	1520800			19404	6806	13600	13626	21823	21823					0.10690847091314026
GKAFSKVSTLI	11	Unmodified	_GKAFSKVSTLI_					0	0	0		nc|ENSG00000160321|O43345-2|ZNF208;ZNF208|p.G1177Afs*13|1|0.13|ENSG00000160321|chr19:21971506-21971506|T/-|frameshift_variant;ENSG00000160321|ENST00000397126|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8428344726562	2	575.845156	1149.67576	0.50468	0.00029062	-4.1927	-0.0024144	-3.6881	-0.0021238	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.79111	1	11178	11178		58.23	3.4536	1	1452500			19405	6806	13600	13626	21824	21824					0.10690847091314026
GKAFSKVSTLI	11	Unmodified	_GKAFSKVSTLI_					0	0	0		nc|ENSG00000160321|O43345-2|ZNF208;ZNF208|p.G1177Afs*13|1|0.13|ENSG00000160321|chr19:21971506-21971506|T/-|frameshift_variant;ENSG00000160321|ENST00000397126|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8426513671875	2	575.845156	1149.67576	-0.082095	-4.7274E-05	-3.6826	-0.0021206	-3.7647	-0.0021679	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	0.63824	2	11130	11130;11154		67.494	2.0283	1	1475600			19406	6806	13600	13626	21825;21826	21825					0.10690847091314026
GKAFSKVSTLI	11	Unmodified	_GKAFSKVSTLI_					0	0	0		nc|ENSG00000160321|O43345-2|ZNF208;ZNF208|p.G1177Afs*13|1|0.13|ENSG00000160321|chr19:21971506-21971506|T/-|frameshift_variant;ENSG00000160321|ENST00000397126|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8429565429688	2	575.845156	1149.67576	-0.59889	-0.00034487	-3.2038	-0.0018449	-3.8027	-0.0021898	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.36442	1	10845	10845		85.161	19.358	1	2151700			19407	6806	13600	13626	21827	21827					0.10690847091314026
GKAFSKVSTLI	11	Unmodified	_GKAFSKVSTLI_					0	0	0		nc|ENSG00000160321|O43345-2|ZNF208;ZNF208|p.G1177Afs*13|1|0.13|ENSG00000160321|chr19:21971506-21971506|T/-|frameshift_variant;ENSG00000160321|ENST00000397126|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8426513671875	2	575.845156	1149.67576	-0.51071	-0.00029409	-3.3307	-0.0019179	-3.8414	-0.002212	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.28368	1	10852	10852		90.601	20.973	1	2085600			19408	6806	13600	13626	21828	21828					0.10690847091314026
GKAFSKVSTLI	11	Unmodified	_GKAFSKVSTLI_					0	0	0		nc|ENSG00000160321|O43345-2|ZNF208;ZNF208|p.G1177Afs*13|1|0.13|ENSG00000160321|chr19:21971506-21971506|T/-|frameshift_variant;ENSG00000160321|ENST00000397126|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	nc|ENSG00000160321|O43345-2|ZNF208	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.72712	1	10852	10852		62.107	1.9892	1	1877500			19409	6806	13600	13626	21829	21829					0.10690847091314026
GKAFSQRTSL	10	Unmodified	_GKAFSQRTSL_					0	0	0		ENSG00000167635|ENST00000443387|ZNF146;nc|ENSG00000196437|Q5MCW4-2|ZNF569;ENSG00000198046|ENST00000504904|ZNF667;ENSG00000196437|ENST00000316950|ZNF569	ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.8031005859375	2	547.80128	1093.58801	-1.0647	-0.00058326	4.1463	0.0022714	3.0816	0.0016881	547.8034779722734	45.495	1.1296	45.346	45.009	46.139	-0.1488					95	32	6	0	0	0	0.98527	1	4403	4403		47.96	5.0953	1	3391700			19410	7713	13601	13627	21830	21830					0.044956462205163916
GKAFSQRTSL	10	Unmodified	_GKAFSQRTSL_					0	0	0		ENSG00000167635|ENST00000443387|ZNF146;nc|ENSG00000196437|Q5MCW4-2|ZNF569;ENSG00000198046|ENST00000504904|ZNF667;ENSG00000196437|ENST00000316950|ZNF569	ENSG00000167635|ENST00000443387|ZNF146	ENSG00000167635|ENST00000443387|ZNF146	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8026123046875	2	547.80128	1093.58801	-0.82736	-0.00045323	3.868	0.0021189	3.0407	0.0016657	547.8033288883533	45.367	1.2941	45.411	45.074	46.368	0.043877					102	37	6	0	0	0	0.80817	1	4363	4363		60.118	1.8883	1	3950600			19411	7713	13601	13627	21831	21831					0.044956462205163916
GKAKERPR	8	Unmodified	_GKAKERPR_					0	0	0		ENST00000512427.5_1_12:54392814-54392907:-|nuORF	ENST00000512427.5_1_12:54392814-54392907:-|nuORF	ENST00000512427.5_1_12:54392814-54392907:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.26251220703125	2	471.2856	940.556647	-0.084534	-3.984E-05	2.9427	0.0013869	2.8582	0.001347	471.2874122200788	26.249	0.40324	26.226	26.124	26.527	-0.023087					10	9	2	0	0	0	0.027866	1	1349	1349		45.952	1.8352	1	19958			19412	15857	13602	13628	21832	21832					0.08399117977091919
GKAKKKGL	8	Unmodified	_GKAKKKGL_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.23193359375	2	415.284537	828.554522	-1.1775	-0.00048901	1.3058	0.00054228	0.12828	5.3272E-05	415.28495080482986	21.405	0.53559	21.192	20.971	21.506	-0.2128					24	10	3	0	0	0	0.027866	1	653	653		0	0	1	220470	+		19413	37192	13603	13629	21833	21833					0.1333868923928776
GKALHPQL	8	Unmodified	_GKALHPQL_					0	0	0			REV__ENST00000485741.6_1_7:72424205-72425256:-|nuORF;REV__ENST00000430211.1_7:75039430-75040029:+|nuORF	REV__ENST00000485741.6_1_7:72424205-72425256:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.2586669921875	2	432.25852	862.502486	-0.11504	-4.9728E-05	0.39639	0.00017134	0.28135	0.00012162	432.2585622318503	35.721	1.2577	35.765	35.192	36.45	0.04406					71	33	4	0	0	0	0.96719	1	2724	2724		42.474	0	1	2392000	+		19414	33567;32350	13604	13630	21834	21834					0.06573525825524484
GKALLQARAK	10	Unmodified	_GKALLQARAK_					0	0	0			REV__ENSG00000167100|ENST00000330175|SAMD14	REV__ENSG00000167100|ENST00000330175|SAMD14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2574462890625	2	528.337833	1054.66111	-0.24546	-0.00012968	0.97106	0.00051305	0.72561	0.00038337	528.3370935676018	44.548	0.51143	44.585	44.34	44.851	0.0369					22	14	2	0	0	0	0.03519	1	4213	4213		26.693	0	1	188550	+		19415	26103	13605	13631	21835	21835					0.13596819733788834
GKALSRSV	8	Unmodified	_GKALSRSV_					0	0	0		ZNF540|p.F588L|1|0.26|ENSG00000171817|chr19:37613044-37613044|T/A|missense_variant	ZNF540|p.F588L|1|0.26|ENSG00000171817|chr19:37613044-37613044|T/A|missense_variant	ZNF540|p.F588L|1|0.26|ENSG00000171817|chr19:37613044-37613044|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.18292236328125	2	409.248152	816.481751	-0.08041	-3.2908E-05	0.22322	9.1353E-05	0.14281	5.8445E-05	409.24813142522976	24.857	0.34586	24.634	24.455	24.801	-0.22302					12	7	2	0	0	0	0.027866	1	1146	1146		13.775	0	1	159810			19416	38198	13606	13632	21836	21836					0.06616935445856598
GKAMLTPKP	9	Unmodified	_GKAMLTPKP_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2039489746094	2	471.775688	941.536823	-0.22019	-0.00010388	1.7987	0.00084857	1.5785	0.00074469	471.7777643758366	30.067	0.25237	29.823	29.696	29.948	-0.24415					7	5	2	0	0	0	0.024427	1	1902	1902		26.693	0	1	18438			19417	300	13607	13633	21837	21837					0.06371605922095114
GKAQREPL	8	Unmodified	_GKAQREPL_					0	0	0		nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.74810791015625	2	449.758884	897.503215	-0.4553	-0.00020478	-1.3978	-0.00062868	-1.8531	-0.00083345	449.7575526147223	31.356	0.69999	31.356	31.089	31.789	0					25	16	3	0	0	0	0.027866	1	2082	2082		23.042	0	1	130040			19418	18321	13608	13634	21838	21838					0.05036320474573586
GKASRLAH	8	Unmodified	_GKASRLAH_					0	0	0			REV__ENSG00000153904|ENST00000284031|DDAH1	REV__ENSG00000153904|ENST00000284031|DDAH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.2459411621094	2	420.245944	838.477334	-0.28462	-0.00011961	0.70683	0.00029704	0.42221	0.00017743	420.2460255414917	20.25	0.63651	20.145	19.837	20.473	-0.10477					27	12	3	0	0	0	1.0009	1	502	502		37.159	1.9584	1	255280	+		19419	24918	13609	13635	21839	21839					0.05163471022933663
GKASRLAH	8	Unmodified	_GKASRLAH_					0	0	0			REV__ENSG00000153904|ENST00000284031|DDAH1	REV__ENSG00000153904|ENST00000284031|DDAH1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	420.245944	838.477334	-0.28462	-0.00011961	0.70683	0.00029704	0.42221	0.00017743	420.2460255414917	20.25	0.63651	20.145	19.837	20.473	-0.10477	0.095718	0.00020729	NaN	37.159	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255280	+		19420	24918	13609	13635							0.05163471022933663
GKATHMPILV	10	Unmodified	_GKATHMPILV_					0	0	0			REV__nc|ENSG00000066027|Q15172-2|PPP2R5A	REV__nc|ENSG00000066027|Q15172-2|PPP2R5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8045654296875	2	533.807519	1065.60049	-0.62298	-0.00033255	-3.5326	-0.0018857	-4.1556	-0.0022183	533.80569556097	44.942	0.99356	44.986	44.654	45.647	0.043877					116	28	5	0	0	0	0.85955	1	4306	4306		56.721	7.2795	1	50938000	+		19421	20326	13610	13636	21840	21840					0.07030966359184276
GKATKLGII	9	Unmodified	_GKATKLGII_					0	0	0			REV__ENSG00000175792|ENST00000322623|RUVBL1	REV__ENSG00000175792|ENST00000322623|RUVBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.76092529296875	2	450.797478	899.580402	-1.1089	-0.00049989	-1.841	-0.00082991	-2.9499	-0.0013298	450.7969818537067	38.878	0.34789	38.905	38.612	38.96	0.027275					11	8	2	0	0	0	0.024319	1	3228	3228		47.657	0	1	71288	+		19422	26973	13611	13637	21841	21841					0.12659538690888894
GKAYSWVD	8	Unmodified	_GKAYSWVD_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.23193359375	2	463.224342	924.434132	-1.2325	-0.00057094	3.9481	0.0018289	2.7156	0.0012579	463.2258266889235	29.258	0.50845	29.258	28.862	29.37	0					16	12	2	0	0	0	0.027866	1	1723	1723		31.955	18.996	1	88711	+		19423	26915	13612	13638	21842	21842					-0.031107635449984627
GKAYSWVD	8	Unmodified	_GKAYSWVD_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.224342	924.434132	-0.48921	-0.00022661	3.4189	0.0015837	2.9297	0.0013571	463.22581455395823	29.181	0.46803	29.184	28.883	29.351	0.0031357	0.052955	0.00053727	NaN	45.952	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141140	+		19424	26915	13612	13638							-0.031107635449984627
GKDEFMKVL	9	Unmodified	_GKDEFMKVL_					0	0	0			REV__ENSG00000152404|ENST00000282251|CWF19L2	REV__ENSG00000152404|ENST00000282251|CWF19L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8051147460938	2	533.78371	1065.55287	-1.1869	-0.00063354	3.7086	0.0019796	2.5217	0.0013461	533.7860981262029	45.067	0.34679	44.919	44.697	45.044	-0.1488					17	9	3	0	0	0	0.024209	1	4315	4315		56.721	0	1	593170	+		19425	24836	13613	13639	21843	21843					0.02271267368359986
GKDEFMKVL	9	Unmodified	_GKDEFMKVL_					0	0	0			REV__ENSG00000152404|ENST00000282251|CWF19L2	REV__ENSG00000152404|ENST00000282251|CWF19L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8052978515625	2	533.78371	1065.55287	-0.60887	-0.000325	-4.2502	-0.0022687	-4.859	-0.0025937	533.7798513157309	45.055	0.52023	45.099	44.79	45.311	0.043877					21	13	3	0	0	0	0.023635	1	4270	4270		66.429	22.052	1	372160	+		19426	24836	13613	13639	21844	21844					0.02271267368359986
GKDGAGIGPR	10	Unmodified	_GKDGAGIGPR_					0	0	0			REV__ENST00000578730.1_1_4:1243983-1244322:+|nuORF	REV__ENST00000578730.1_1_4:1243983-1244322:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2532653808594	2	464.253966	926.493378	0.040288	1.8704E-05	-0.56771	-0.00026356	-0.52742	-0.00024486	464.253647614494	78.531	1.9862	78.276	77.955	79.941	-0.25471					73	46	2	0	0	0	1.0909	1	9380	9380		33.922	0.42865	1	2782100	+		19427	35492	13614	13640	21845	21845					0.027191324691898444
GKDKVKGKR	9	Unmodified	_GKDKVKGKR_					0	0	0		ENSG00000204296|ENST00000533191|TSBP1;nc|ENSG00000204296|Q5SRN2-2|TSBP1;nc|ENSG00000204296|Q5SRN2|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2916259765625	2	508.322183	1014.62981	-0.57598	-0.00029278	2.6423	0.0013432	2.0663	0.0010504	508.3262450515991	50.545	0.3003	50.545	50.341	50.642	0					11	8	2	0	0	0	0.024418	1	5275	5275		45.972	14.442	1	125100			19428	10325	13615	13641	21846	21846					0.12308246699717529
GKEEDEEEETE	11	Unmodified	_GKEEDEEEETE_					0	0	0		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.4970703125	3	441.840531	1322.49976	-1.2732	-0.00056256	3.2022	0.0014148	1.929	0.00085229	441.84198653846283	29.246	0.39197	29.001	28.881	29.273	-0.24524					11	8	2	0	0	0	0.024734	1	1801	1801		30.139	1.5624	1	45433			19429	1313	13616	13642	21847	21847					-0.14858528461923015
GKEPQKQL	8	Unmodified	_GKEPQKQL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.25054931640625	2	464.266542	926.51853	-0.57947	-0.00026903	2.1078	0.00097856	1.5283	0.00070953	464.2672713780676	47.994	0.40583	47.994	47.938	48.344	0					20	11	2	0	0	0	0.027866	1	4905	4905		60.972	0	1	1567100			19430	4246	13617	13643	21848	21848					0.052331872717559236
GKEQILRQLH	10	Unmodified	_GKEQILRQLH_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3550415039062	2	611.356754	1220.69895	-0.48583	-0.00029701	-0.63604	-0.00038885	-1.1219	-0.00068586	611.356228030172	91.439	0.71664	91.426	91.075	91.791	-0.012383					31	16	2	0	0	0	1.1286	1	11592	11592		25.574	0	1	1655300	+		19431	26221	13618	13644	21849	21849					0.09743285928584555
GKEQSPVLF	9	Unmodified	_GKEQSPVLF_					0	0	0			REV__ENST00000537236.2_1_12:110006587-110011320:-|nuORF	REV__ENST00000537236.2_1_12:110006587-110011320:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.77490234375	2	502.7742	1003.53385	-0.036211	-1.8206E-05	0.159	7.9943E-05	0.12279	6.1737E-05	502.7739714993665	90.256	1.6193	90.239	89.162	90.781	-0.016716					80	38	4	0	0	0	0.39228	1	11375	11375		66.429	0.6261	1	895810	+		19432	34697	13619	13645	21850	21850					0.03222054068953639
GKERFDLY	8	Unmodified	_GKERFDLY_					0	0	0			REV__ENSG00000143942|ENST00000295304|CHAC2	REV__ENSG00000143942|ENST00000295304|CHAC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7980346679688	2	514.263999	1026.51345	-0.95533	-0.00049129	-0.24184	-0.00012437	-1.1972	-0.00061566	514.2629531861845	35.44	0.33436	35.44	35.235	35.57	0					11	8	2	0	0	0	0.027866	1	2727	2727		25.45	8.0852	1	63923	+		19433	24299	13620	13646	21851	21851					0.0012488340912568674
GKERLTTH	8	Unmodified	_GKERLTTH_					0	0	0			REV__ENSG00000069018|ENST00000513104|TRPC7	REV__ENSG00000069018|ENST00000513104|TRPC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.26141357421875	2	471.261791	940.509028	0.13924	6.562E-05	-0.30696	-0.00014466	-0.16772	-7.904E-05	471.2616868818563	26.249	1.4424	26.249	25.737	27.179	0					91	34	4	0	0	0	0.91956	2	1332	1332;1364		49.442	4.9105	1	5630000	+		19434	20395	13621	13647	21852;21853	21852					0.03639418986222154
GKERVCDI	8	Unmodified	_GKERVCDI_					0	0	0			REV__ENSG00000138166|ENST00000369583|DUSP5	REV__ENSG00000138166|ENST00000369583|DUSP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.26116943359375	2	460.236927	918.459301	0.12877	5.9264E-05	-0.13216	-6.0825E-05	-0.0033919	-1.5611E-06	460.2368518901409	28.166	1.6256	28.247	27.319	28.945	0.080811					61	40	2	0	0	0	0.027866	1	1526	1526		29.15	0	1	243810	+		19435	23830	13622	13648	21854	21854					-0.0031903201407885717
GKESKINH	8	Unmodified	_GKESKINH_					0	0	0			REV__MNDA|p.C361S|1|0.37|ENSG00000163563|chr1:158847822-158847822|G/C|missense_variant	REV__MNDA|p.C361S|1|0.37|ENSG00000163563|chr1:158847822-158847822|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2455749511719	2	456.748516	911.482479	-1.0138	-0.00046305	1.8605	0.0008498	0.84673	0.00038674	456.7490122848189	24.885	0.97516	24.851	24.145	25.121	-0.034397					27	21	2	0	0	0	0.027866	1	1078	1078		44.117	0	1	105830	+		19436	36393	13623	13649	21855	21855					0.02319730094905026
GKESYVSIL	9	Unmodified	_GKESYVSIL_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.27301025390625	2	498.274032	994.533512	0.95944	0.00047807	-3.2835	-0.0016361	-2.3241	-0.001158	498.27222074446075	85.981	0.76309	85.981	85.667	86.43	0					37	17	4	0	0	0	0.15029	1	10799	10799		99.375	25.4	1	521680	+		19437	26863	13624	13650	21856	21856					0.036026343490902946
GKESYVSIL	9	Unmodified	_GKESYVSIL_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	498.274032	994.533512	0.95944	0.00047807	-3.2835	-0.0016361	-2.3241	-0.001158	498.27222074446075	85.981	0.76309	85.981	85.667	86.43	0	0.020272	-0.00094598	NaN	99.375	37	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521680	+		19438	26863	13624	13650							0.036026343490902946
GKESYVSIL	9	Unmodified	_GKESYVSIL_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.274032	994.533512	-0.17342	-8.6411E-05	-2.2086	-0.0011005	-2.3821	-0.0011869	498.27284891546026	85.983	0.80734	85.938	85.616	86.423	-0.045097	-0.022862	0.00012519	NaN	99.375	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460300	+		19439	26863	13624	13650							0.036026343490902946
GKESYVSIL	9	Unmodified	_GKESYVSIL_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.274032	994.533512	-0.82544	-0.00041129	-1.6955	-0.00084482	-2.5209	-0.0012561	498.27313241505675	85.939	0.67547	85.963	85.657	86.332	0.023666	0.0025895	0.00063657	NaN	99.375	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633120	+		19440	26863	13624	13650							0.036026343490902946
GKFTQKVKV	9	Unmodified	_GKFTQKVKV_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2869262695312	2	517.821484	1033.62842	-1.6293	-0.00084371	2.0327	0.0010526	0.40333	0.00020885	517.8221887480677	49.462	0.37834	49.536	49.352	49.731	0.074192					12	9	2	0	0	0	0.024374	1	5054	5054		40.778	3.6191	1	88177			19441	3722	13625	13651	21857	21857					0.11294612610936383
GKFYVANI	8	Unmodified	_GKFYVANI_					0	0	0			REV__ENSG00000163536|ENST00000446050|SERPINI1	REV__ENSG00000163536|ENST00000446050|SERPINI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.26971435546875	2	456.252903	910.491253	0.46458	0.00021197	-3.4594	-0.0015784	-2.9948	-0.0013664	456.2510363150298	25.379	0.82951	25.46	25.093	25.922	0.08009					40	19	3	0	0	0	0.027866	1	1154	1154		31.955	1.4512	1	162510	+		19442	25588	13626	13652	21858	21858					0.032427037313595974
GKFYVANI	8	Unmodified	_GKFYVANI_					0	0	0			REV__ENSG00000163536|ENST00000446050|SERPINI1	REV__ENSG00000163536|ENST00000446050|SERPINI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	456.252903	910.491253	-0.54271	-0.00024761	-2.1809	-0.00099506	-2.7237	-0.0012427	456.25132721595446	25.645	1.2316	25.61	25.121	26.352	-0.034395	0.067326	0.00088755	NaN	24.203	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212620	+		19443	25588	13626	13652							0.032427037313595974
GKGAFGAVIKV	11	Unmodified	_GKGAFGAVIKV_					0	0	0		EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.M1030Sfs*18|1|0.14|ENSG00000128829|chr15:40001153-40001168|ATGATGGCCCAGATCT/-|frameshift_variant	EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant	EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2945556640625	2	523.821484	1045.62842	-0.95311	-0.00049926	0.76586	0.00040117	-0.18724	-9.8082E-05	523.8217980694421	51.104	0.65093	51.191	50.926	51.577	0.087006					39	17	3	0	0	0	0.024756	1	5377	5377		36.447	0	1	663090			19444	690	13627	13653	21859	21859					0.1074261261094307
GKGDPKKPR	9	Unmodified	_GKGDPKKPR_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.78802490234375	2	491.793258	981.571963	-0.86276	-0.0004243	0.65224	0.00032076	-0.21053	-0.00010354	491.79319030313184	20.826	0.58472	20.826	20.562	21.146	0					16	11	2	0	0	0	0.024374	1	564	564		32.812	9.2897	1	24544			19445	9808	13628	13654	21860	21860					0.08043984774269575
GKGDYFER	8	Unmodified	_GKGDYFER_					0	0	0			REV__KMT2B|p.K2619del|1|0.22|ENSG00000272333|chr19:35738172-35738174|AGA/-|inframe_deletion	REV__KMT2B|p.K2619del|1|0.22|ENSG00000272333|chr19:35738172-35738174|AGA/-|inframe_deletion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.790771484375	2	486.232699	970.450845	-0.88773	-0.00043165	0.63869	0.00031055	-0.24905	-0.00012109	486.23288362354344	37.911	0.55669	37.689	37.309	37.866	-0.22149					23	14	2	0	0	0	0.027866	1	3030	3030		19.104	0	1	156350	+		19446	36189	13629	13655	21861	21861					-0.035562626590490254
GKGEALVSN	9	Unmodified	_GKGEALVSN_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2248840332031	2	437.735074	873.455596	0.19042	8.3352E-05	-0.030701	-1.3439E-05	0.15972	6.9913E-05	437.7351023358374	34.167	0.62047	34.163	33.948	34.568	-0.0045624					20	15	2	0	0	0	0.024017	1	2495	2495		40.058	2.2467	1	256350	+		19447	23453	13630	13656	21862	21862					0.01380621483701816
GKGFLGRRA	9	Unmodified	_GKGFLGRRA_					0	0	0			REV__ENST00000478441.1_1_3:186333572-186335301:+|nuORF	REV__ENST00000478441.1_1_3:186333572-186335301:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.7587890625	2	481.288143	960.561733	-0.27679	-0.00013322	-0.42254	-0.00020336	-0.69933	-0.00033658	481.28775392005235	21.469	1.2015	21.378	20.961	22.162	-0.090092					43	24	2	0	0	0	0.024477	1	711	711		20.947	0	1	159510	+		19448	33369	13631	13657	21863	21863					0.07987421839709441
GKGFTRIS	8	Unmodified	_GKGFTRIS_					0	0	0		nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3;ENSG00000189298|ENST00000252211|ZKSCAN3	nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3	nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.2380065917969	2	433.248152	864.481751	-0.27795	-0.00012042	0.82367	0.00035685	0.54573	0.00023644	433.24821797322744	34.748	0.53687	34.748	34.444	34.981	0					35	13	4	0	0	0	0.027866	1	2579	2579		26.693	6.6961	1	139180			19449	9803	13632	13658	21864	21864					0.04408935445837869
GKGGAKEKISA	11	Unmodified	_GKGGAKEKISA_					0	0	0		ENSG00000163541|ENST00000393868|SUCLG1	ENSG00000163541|ENST00000393868|SUCLG1	ENSG00000163541|ENST00000393868|SUCLG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0392	1	10870	10870		28.081	0.19925	1	14210000			19450	7104	13633	13659	21865	21865					0.07224530363305348
GKGGILAHAF	10	Unmodified	_GKGGILAHAF_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2610168457031	2	485.777077	969.5396	0.31827	0.00015461	-1.1854	-0.00057585	-0.86715	-0.00042124	485.77699061249905	57.034	0.53046	56.809	56.504	57.035	-0.2248					17	13	2	0	0	0	0.03519	1	6165	6165		38.806	16.846	1	123770			19451	10957	13634	13660	21866	21866					0.05361197371257731
GKGGILAHAF	10	Unmodified	_GKGGILAHAF_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.777077	969.5396	-0.74455	-0.00036169	-7.0876	-0.003443	-7.8321	-0.0038047	485.77462573452607	56.679	0.21935	56.515	56.387	56.606	-0.16431	-0.14694	-0.0037501	NaN	30.504	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55336			19452	10957	13634	13660							0.05361197371257731
GKGHKRLLN	9	Unmodified	_GKGHKRLLN_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.8341064453125	2	511.814525	1021.6145	0.043398	2.2212E-05	3.0568	0.0015645	3.1002	0.0015867	511.81597862008334	72.747	0.1246	72.757	72.693	72.818	0.0096512					4	2	2	0	0	0	0.024541	1	8792	8792		16.473	0	1	35401	+		19453	23116	13635	13661	21867	21867					0.10455379902509776
GKGIHKLPE	9	Unmodified	_GKGIHKLPE_					0	0	0			REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.26385498046875	2	489.790184	977.565815	-0.62505	-0.00030615	0.43863	0.00021484	-0.18643	-9.131E-05	489.79028921205827	50.555	1.651	50.636	50.022	51.673	0.08099					102	47	3	0	0	0	0.024405	1	5273	5273		27.882	0	1	1087300	+		19454	22620	13636	13662	21868	21868					0.07613466542738934
GKGIKFAI	8	Unmodified	_GKGIKFAI_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.89501953125	2	417.265813	832.517074	-0.50424	-0.0002104	-0.61641	-0.00025721	-1.1207	-0.00046761	417.26541362785366	30.598	0.41636	30.354	30.122	30.538	-0.24415					12	9	2	0	0	0	0.027866	1	1940	1940		23.042	8.3784	1	26459			19455	858	13637	13663	21869	21869					0.09411597973644348
GKGIKFAI	8	Unmodified	_GKGIKFAI_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	417.265813	832.517074	-0.71317	-0.00029758	0.10744	4.4831E-05	-0.60573	-0.00025275	417.265753342681	30.388	0.45662	30.21	30.04	30.497	-0.17817	-0.072077	0.00044314	NaN	23.042	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33747			19456	858	13637	13663							0.09411597973644348
GKGIWIVAP	9	Unmodified	_GKGIWIVAP_					0	0	0		ENST00000532710.5_1_11:4116032-4116089:+|nuORF	ENST00000532710.5_1_11:4116032-4116089:+|nuORF	ENST00000532710.5_1_11:4116032-4116089:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.78265380859375	2	470.78437	939.554188	-0.74324	-0.0003499	0.72432	0.000341	-0.018919	-8.9066E-06	470.78457770753676	46.722	1.9491	46.528	46.165	48.114	-0.19387					124	53	4	0	0	0	0.67308	2	4495	4495;4528		47.916	5.4411	1	13054000			19457	16297	13638	13664	21870;21871	21870					0.081992695194117
GKGKDKRRG	9	Unmodified	_GKGKDKRRG_					0	0	0		nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG;ENST00000478903.5_1_3:197616453-197639632:-|nuORF;ENST00000485787.1_1_3:197616453-197639757:-|nuORF	nc|ENSG00000114473|Q9H095-2|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.30523681640625	2	501.301781	1000.58901	-0.57172	-0.0002866	2.5772	0.001292	2.0055	0.0010054	501.30284995340037	33.123	0.51779	33.123	32.903	33.421	0					27	13	3	0	0	0	0.024487	1	2343	2343		11.511	0	1	561120			19458	3366	13639	13665	21872	21872					0.08873905380085034
GKGKELTKVF	10	Unmodified	_GKGKELTKVF_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8303833007812	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.0236	1	11011	11011		42.864	6.4175	1	5986700			19459	6234	13640	13666	21873	21873					0.10094577919790026
GKGKIEVTQ	9	Unmodified	_GKGKIEVTQ_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7431335449219	2	480.279649	958.544745	-0.49006	-0.00023536	-0.49431	-0.00023741	-0.98437	-0.00047277	480.27952614218015	45.193	0.85481	45.045	44.628	45.483	-0.1488					76	24	5	0	0	0	0.024477	1	4407	4407		2.5243	0	1	1017800	+		19460	25129	13641	13667	21874	21874					0.06381456443239131
GKGKIEVTQ	9	Unmodified	_GKGKIEVTQ_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.279649	958.544745	-0.41551	-0.00019956	-7.8145	-0.0037531	-8.23	-0.0039527	480.27473625792345	45.625	0.13458	45.423	45.358	45.492	-0.20226	0.18914	-0.0023122	NaN	4.9057	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71144	+		19461	25129	13641	13667							0.06381456443239131
GKGKKKGY	8	Unmodified	_GKGKKKGY_					0	0	0		ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.7165832519531	2	433.266345	864.518136	-0.27989	-0.00012127	0.10419	4.5141E-05	-0.1757	-7.6126E-05	433.2663313303045	47.866	1.0213	47.929	47.46	48.481	0.062237					38	29	2	0	0	0	0.027866	1	4704	4704		12.207	0	1	416550			19462	14963	13642	13668	21875	21875					0.08045812342561476
GKGKKRPN	8	Unmodified	_GKGKKRPN_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2660217285156	2	442.774868	883.535184	-0.18781	-8.3158E-05	4.4078	0.0019517	4.22	0.0018685	442.7767795942263	60.442	0.40191	60.188	59.977	60.378	-0.25374					14	9	2	0	0	0	0.027866	1	6738	6738		16.473	3.514	1	91288			19463	1686	13643	13669	21876	21876					0.08875732948365567
GKGKKRPNRGK	11	Unmodified	_GKGKKRPNRGK_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.2468566894531	3	409.258184	1224.75272	0.70853	0.00028997	3.0394	0.0012439	3.7479	0.0015339	409.2593482639424	37.542	0.39058	37.542	37.379	37.769	0					14	10	2	0	0	0	0.02478	1	3109	3109		45.908	18.861	1	131870			19464	1686	13644	13670	21877	21877					0.14933503150973593
GKGKLPKQP	9	Unmodified	_GKGKLPKQP_					0	0	0		ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7901306152344	2	476.800552	951.58655	-0.27884	-0.00013295	-0.33561	-0.00016002	-0.61444	-0.00029297	476.80006289020895	53.425	0.69173	53.278	52.91	53.602	-0.14723					32	18	2	0	0	0	0.024506	1	5756	5756		23.042	14.811	1	95197			19465	7561	13645	13671	21878	21878					0.10882056922423544
GKGKPKSLI	9	Unmodified	_GKGKPKSLI_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.76922607421875	2	464.302927	926.591301	-0.12717	-5.9048E-05	0.19261	8.943E-05	0.065436	3.0382E-05	464.3028742237625	63.277	0.83533	63.027	62.684	63.52	-0.24955					35	21	3	0	0	0	0.024447	1	7437	7437		32.812	0	1	804610	+		19466	28328	13646	13672	21879	21879					0.125069410651804
GKGKRAVL	8	Unmodified	_GKGKRAVL_					0	0	0			REV__ENSG00000188467|ENST00000341459|SLC24A5	REV__ENSG00000188467|ENST00000341459|SLC24A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.7619323730469	2	414.774337	827.534121	0.81162	0.00033664	-0.51155	-0.00021218	0.30007	0.00012446	414.77362963275056	87.715	0.51028	87.68	87.532	88.042	-0.035362					25	12	3	0	0	0	0.027866	1	10991	10991		17.365	2.7009	1	350520	+		19467	28038	13647	13673	21880	21880					0.11345518579457803
GKGKRAVL	8	Unmodified	_GKGKRAVL_					0	0	0			REV__ENSG00000188467|ENST00000341459|SLC24A5	REV__ENSG00000188467|ENST00000341459|SLC24A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.7618103027344	2	414.774337	827.534121	0.98195	0.00040729	-0.23195	-9.6207E-05	0.75	0.00031108	414.77414564783754	87.6	0.16577	87.619	87.473	87.639	0.018555					6	3	2	0	0	0	0.027866	1	10937	10937		12.959	0	1	52382	+		19468	28038	13647	13673	21881	21881					0.11345518579457803
GKGKSAKKSP	10	Unmodified	_GKGKSAKKSP_					0	0	0			REV__ENSG00000111652|ENST00000543155|COPS7A	REV__ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3007507324219	2	494.300916	986.587279	0.89614	0.00044296	-1.5866	-0.00078426	-0.69047	-0.0003413	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	1.0545	1	12228	12228		38.754	1.5945	1	45891000	+		19469	21932	13648	13674	21882	21882					0.09344851571472645
GKGKVGRPT	9	Unmodified	_GKGKVGRPT_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.27423095703125	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	0.99229	1	11479	11479		21.96	0.25755	1	55183000			19470	1400	13649	13675	21883	21883					0.08152313228526964
GKGLLYLL	8	Unmodified	_GKGLLYLL_					0	0	0			REV__ENST00000602720.5_1_17:74035517-74035583:-|nuORF	REV__ENST00000602720.5_1_17:74035517-74035583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.7564697265625	2	438.781296	875.54804	0.35572	0.00015608	-3.3352	-0.0014634	-2.9795	-0.0013073	438.7797673925805	41.127	0.3481	41.127	40.944	41.292	0					16	9	2	0	0	0	0.027866	1	3651	3651		28.254	0	1	120110	+		19471	35886	13650	13676	21884	21884					0.10528751287893101
GKGLLYLL	8	Unmodified	_GKGLLYLL_					0	0	0			REV__ENST00000602720.5_1_17:74035517-74035583:-|nuORF	REV__ENST00000602720.5_1_17:74035517-74035583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.75653076171875	2	438.781296	875.54804	0.39518	0.0001734	-3.6698	-0.0016102	-3.2746	-0.0014368	438.7795995672181	41.274	0.38181	41.151	40.98	41.361	-0.12317					15	10	2	0	0	0	0.027866	1	3664	3664		12.207	0	1	92773	+		19472	35886	13650	13676	21885	21885					0.10528751287893101
GKGLNVMLKV	10	Unmodified	_GKGLNVMLKV_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3	REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.28271484375	2	529.823169	1057.63179	-1.1465	-0.00060743	-0.2691	-0.00014258	-1.4156	-0.00075001	529.8210707733186	48.334	0.20498	48.334	48.243	48.448	0					8	5	2	0	0	0	0.03519	1	4924	4924		19.997	0	1	37613	+		19473	36441	13651	13677	21886	21886					0.10527539393297047
GKGMSRRI	8	Unmodified	_GKGMSRRI_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.22845458984375	2	452.760904	903.507254	-0.09086	-4.1138E-05	-3.8783	-0.0017559	-3.9691	-0.0017971	452.7591732684914	102.93	0.50323	102.81	102.59	103.09	-0.12783					31	11	4	0	0	0	0.027866	1	12817	12817		44.117	17.321	1	1456000	+		19474	20350	13652	13678	21887	21887					0.051640866966408794
GKGNLIQGPS	10	Unmodified	_GKGNLIQGPS_					0	0	0			REV__nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000163635|O15265-3|ATXN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.75921630859375	2	485.769448	969.524344	-0.85104	-0.00041341	0.47219	0.00022938	-0.37884	-0.00018403	485.7695354791387	37.662	0.58007	37.694	37.377	37.957	0.032269					34	15	3	0	0	0	0.03519	1	3012	3012		19.997	0.89325	1	1497700	+		19475	25607	13653	13679	21888	21888					0.03836285783427229
GKGNPISKV	9	Unmodified	_GKGNPISKV_					0	0	0			REV__ENST00000488901.5_1_1:155581342-155581721:+|nuORF	REV__ENST00000488901.5_1_1:155581342-155581721:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.74334716796875	2	450.269084	898.523616	-0.9125	-0.00041087	1.2683	0.00057108	0.35581	0.00016021	450.26945824871194	27.029	0.92222	27.11	26.799	27.722	0.081293					41	24	2	0	0	0	0.024427	1	1381	1381		26.693	11.051	1	201200	+		19476	22821	13654	13680	21889	21889					0.07029491134380805
GKGNVKVK	8	Unmodified	_GKGNVKVK_					0	0	0		nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;nc|ENSG00000139364|Q14DG7-3|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.22137451171875	2	415.266345	828.518136	2.2879	0.00095011	-2.2736	-0.00094414	0.01438	5.9713E-06	415.2652544349286	24.476	0.65128	24.295	24.072	24.723	-0.18089					18	14	2	0	0	0	0.027866	1	1038	1038		16.473	0	1	42659			19477	5330	13655	13681	21890	21890					0.09701812342564153
GKGPGRVSA	9	Unmodified	_GKGPGRVSA_					0	0	0		ENST00000353617.6_1_4:153701211-153701370:+|nuORF	ENST00000353617.6_1_4:153701211-153701370:+|nuORF	ENST00000353617.6_1_4:153701211-153701370:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.76153564453125	2	414.737951	827.46135	0.80006	0.00033181	0.3442	0.00014275	1.1443	0.00047457	414.73833991544564	87.783	0.31248	87.748	87.532	87.844	-0.035355					12	7	2	0	0	0	0.024405	1	11002	11002		27.882	17.017	1	174440			19478	12614	13656	13682	21891	21891					0.04071764786033327
GKGPILFPW	9	Unmodified	_GKGPILFPW_					0	0	0		ENST00000460295.1_1_3:38180152-38181542:+|nuORF;ENST00000484513.1_1_3:38180924-38181542:+|nuORF	ENST00000460295.1_1_3:38180152-38181542:+|nuORF	ENST00000460295.1_1_3:38180152-38181542:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.298583984375	2	507.792195	1013.56984	-0.8764	-0.00044503	-4.3404	-0.002204	-5.2168	-0.0026491	507.7900564938554	26.635	0.69423	26.471	26.101	26.795	-0.16331					35	17	3	0	0	0	0.024487	1	1416	1416		17.365	0	1	358350			19479	14650	13657	13683	21892	21892					0.06359556036466074
GKGPTRLKR	9	Unmodified	_GKGPTRLKR_					0	0	0			REV__nc|ENSG00000076248|P13051-2|UNG	REV__nc|ENSG00000076248|P13051-2|UNG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.756103515625	2	506.82235	1011.63015	-0.61654	-0.00031248	2.7092	0.0013731	2.0926	0.0010606	506.8234697864964	34.816	0.18504	34.867	34.762	34.947	0.050255					6	4	2	0	0	0	0.024541	1	2578	2578		14.865	3.9993	1	48236	+		19480	36474	13658	13684	21893	21893					0.1247966641955145
GKGPVARK	8	Unmodified	_GKGPVARK_					0	0	0			REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2486572265625	2	406.758687	811.502821	0.15266	6.2095E-05	4.1847	0.0017022	4.3374	0.0017643	406.76011573475444	87.898	0.67461	87.719	87.448	88.123	-0.17875					23	16	3	0	0	0	0.027866	1	10669	10669		7.1934	0.45781	1	264290	+		19481	31361	13659	13685	21894	21894					0.08952945545365765
GKGPVARK	8	Unmodified	_GKGPVARK_					0	0	0			REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	REV__ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	406.758687	811.502821	-0.041582	-1.6914E-05	5.8942	0.0023975	5.8526	0.0023806	406.7612604909885	87.987	0.64552	87.849	87.545	88.19	-0.13744	0.10555	0.0023168	NaN	7.1934	17	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232210	+		19482	31361	13659	13685							0.08952945545365765
GKGPVFTRR	9	Unmodified	_GKGPVFTRR_					0	0	0			REV__ENSG00000125895|ENST00000429036|TMEM74B	REV__ENSG00000125895|ENST00000429036|TMEM74B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.818603515625	2	509.30125	1016.58795	-1.1546	-0.00058802	-3.5068	-0.001786	-4.6613	-0.002374	509.2994538375826	75.527	1.275	75.527	74.835	76.11	0					54	33	2	0	0	0	0.024427	1	9175	9175		34.173	7.3764	1	915830	+		19483	22859	13660	13686	21895	21895					0.08031691011183284
GKGQLITGM	9	Unmodified	_GKGQLITGM_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENST00000441699.1_1_7:55779182-55780918:-|nuORF;FKBP9|p.N129Ifs*10|1|0.2|ENSG00000122642|chr7:32975192-32975192|C/-|frameshift_variant	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.228515625	2	452.74967	903.484787	0.36634	0.00016586	1.6517	0.00074782	2.0181	0.00091368	452.7497649388687	102.7	0.6462	102.7	102.37	103.02	-0.0046005					24	15	3	0	0	0	0.024261	1	13092	13092		45.972	3.5761	1	288990			19484	3937	13661	13687	21896	21896					0.02918442508348562
GKGQPLPSG	9	Unmodified	_GKGQPLPSG_					0	0	0			REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.7438049316406	2	420.732335	839.450116	-0.37956	-0.00015969	1.0887	0.00045804	0.7091	0.00029834	420.7314628092782	27.715	0.11545	27.702	27.645	27.761	-0.012983					4	2	2	0	0	0	0.02435	1	1538	1538		19.997	0.6368	1	46090	+		19485	36508	13662	13688	21897	21897					0.02396942691905224
GKGQSRAVPK	10	Unmodified	_GKGQSRAVPK_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.3038940429688	2	514.30399	1026.59343	-1.5419	-0.000793	0.96623	0.00049693	-0.57567	-0.00029607	514.3044246796318	29.817	0.64924	29.817	29.447	30.096	0					47	15	4	0	0	0	0.86389	1	1867	1867		56.434	6.9922	1	1976600	+		19486	23184	13663	13689	21898	21898					0.0811936980298924
GKGQSRAVPK	10	Unmodified	_GKGQSRAVPK_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.3037719726562	2	514.30399	1026.59343	-1.1385	-0.00058553	0.65192	0.00033528	-0.48658	-0.00025025	514.3042455924655	29.505	0.59868	29.584	29.284	29.883	0.078346					41	14	4	0	0	0	0.80817	1	1763	1763		60.118	7.1816	1	2425000	+		19487	23184	13663	13689	21899	21899					0.0811936980298924
GKGRKKGRG	9	Unmodified	_GKGRKKGRG_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7774963378906	2	472.299042	942.583531	0.48149	0.00022741	2.0066	0.00094773	2.4881	0.0011751	472.2998195863578	28.658	0.29313	28.739	28.533	28.826	0.080812					13	6	3	0	0	0	0.024436	1	1639	1639		10.866	0	1	65606			19488	1689	13664	13690	21900	21900					0.10994226588286438
GKGRNLVP	8	Unmodified	_GKGRNLVP_					0	0	0			REV__ENST00000478291.1_1_3:184049262-184049734:+|nuORF	REV__ENST00000478291.1_1_3:184049262-184049734:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7437744140625	2	420.756144	839.497735	-0.47658	-0.00020052	-3.5416	-0.0014902	-4.0182	-0.0016907	420.7537193829295	27.633	0.40958	27.633	27.435	27.844	0					14	10	2	0	0	0	0.027866	1	1555	1555		37.028	8.7742	1	47392	+		19489	33362	13665	13691	21901	21901					0.07156641682740883
GKGRNLVP	8	Unmodified	_GKGRNLVP_					0	0	0			REV__ENST00000478291.1_1_3:184049262-184049734:+|nuORF	REV__ENST00000478291.1_1_3:184049262-184049734:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.7439880371094	2	420.756144	839.497735	-0.66637	-0.00028038	0.30455	0.00012814	-0.36181	-0.00015223	420.75817113980753	27.363	0.43846	27.445	27.245	27.684	0.081293					16	11	2	0	0	0	0.027866	1	1428	1428		44.531	14.027	1	62149	+		19490	33362	13665	13691	21902	21902					0.07156641682740883
GKGRRRAEA	9	Unmodified	_GKGRRRAEA_					0	0	0		ENST00000580320.5_1_17:79995441-79995558:-|nuORF	ENST00000580320.5_1_17:79995441-79995558:-|nuORF	ENST00000580320.5_1_17:79995441-79995558:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2310485839844	2	500.791581	999.568609	-1.5465	-0.00077449	4.3927	0.0021998	2.8461	0.0014253	500.7936772768613	38.364	0.58321	38.392	38.264	38.847	0.027275					28	15	2	0	0	0	0.024397	1	3197	3197		47.657	27.661	1	398180			19491	17149	13666	13692	21903	21903					0.06880734720266446
GKGRRRAL	8	Unmodified	_GKGRRRAL_					0	0	0		ENST00000215829.7_1_22:24951748-24951973:+|nuORF	ENST00000215829.7_1_22:24951748-24951973:+|nuORF	ENST00000215829.7_1_22:24951748-24951973:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.75103759765625	2	457.293759	912.572966	-0.42557	-0.00019461	2.9715	0.0013588	2.5459	0.0011642	457.29498738915186	29.765	0.64838	29.773	29.393	30.042	0.0083313					24	15	3	0	0	0	0.027866	1	1853	1853		40.573	4.9543	1	100930			19492	11144	13667	13693	21904	21904					0.11318243933828853
GKGRVAAQS	9	Unmodified	_GKGRVAAQS_					0	0	0		ENST00000251181.8_1_14:105360511-105361292:+|nuORF;nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	ENST00000251181.8_1_14:105360511-105361292:+|nuORF	ENST00000251181.8_1_14:105360511-105361292:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.9339599609375	2	437.248683	872.482814	-0.062974	-2.7535E-05	0.37871	0.00016559	0.31573	0.00013805	437.248833283994	20.34	0.43939	20.172	19.955	20.395	-0.16774					12	8	2	0	0	0	0.024381	1	544	544		15.642	0	1	61311			19493	2087	13668	13694	21905	21905					0.04147149814752993
GKGSEKPAPK	10	Unmodified	_GKGSEKPAPK_					0	0	0			REV__ENST00000526387.5_1_11:67177262-67177541:+|nuORF	REV__ENST00000526387.5_1_11:67177262-67177541:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2833557128906	2	499.785099	997.555644	-0.26989	-0.00013489	0.12196	6.0954E-05	-0.14793	-7.3933E-05	499.7850232716487	37.549	0.82903	37.581	37.303	38.132	0.032269					34	22	3	0	0	0	0.03519	1	3074	3074		28.081	0	1	591610	+		19494	34442	13669	13695	21906	21906					0.05676858817514585
GKGSFGEVF	9	Unmodified	_GKGSFGEVF_					0	0	0		ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000134602|ENST00000394334|STK26;nc|ENSG00000134602|Q9P289-3|STK26	ENSG00000102572|ENST00000539966|STK24;ENSG00000134602|ENST00000394334|STK26	ENSG00000102572|ENST00000539966|STK24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.27886962890625	2	464.232168	926.449782	0.26461	0.00012284	0.37709	0.00017506	0.6417	0.0002979	464.23217510563524	52.227	0.48518	52.319	52.04	52.526	0.091938					19	11	2	0	0	0	0.024487	1	5474	5474		24.203	12.692	1	149280			19495	2416;4813	13670	13696	21907	21907					-0.01638477027938734
GKGSFGEVF	9	Unmodified	_GKGSFGEVF_					0	0	0		ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000134602|ENST00000394334|STK26;nc|ENSG00000134602|Q9P289-3|STK26	ENSG00000102572|ENST00000539966|STK24;ENSG00000134602|ENST00000394334|STK26	ENSG00000102572|ENST00000539966|STK24	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	464.232168	926.449782	0.31908	0.00014813	0.89702	0.00041643	1.2161	0.00056455	464.23235072353674	52.428	0.4346	52.281	52.095	52.53	-0.14723	-0.021689	4.3487E-05	NaN	17.365	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267560			19496	2416;4813	13670	13696							-0.01638477027938734
GKGSRQGGFNL	11	Unmodified	_GKGSRQGGFNL_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7978515625	2	560.796529	1119.5785	0.87594	0.00049122	0.65614	0.00036796	1.5321	0.00085918	560.7971807161572	99.46	0.46497	99.336	99.176	99.641	-0.12458					19	12	2	0	0	0	0.97926	1	12343	12343		41.427	2.1738	1	59380	+		19497	29247	13671	13697	21908	21908					0.023498779350120458
GKGTTVTVSSA	11	Unmodified	_GKGTTVTVSSA_					0	0	0		chr14:105845677-105863198|280|237.9|0.0|24.5|-|2|IGHD,IGHJ6|1;chr14:105669844-105863198|509|5906.51|0.0|29.14|-|2|None,IGHJ6|1	chr14:105845677-105863198|280|237.9|0.0|24.5|-|2|IGHD,IGHJ6|1	chr14:105845677-105863198|280|237.9|0.0|24.5|-|2|IGHD,IGHJ6|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.232177734375	2	504.272021	1006.52949	-1.1727	-0.00059134	-2.6422	-0.0013324	-3.8148	-0.0019237	504.77165667847817	44.623	0.82266	44.412	44.048	44.871	-0.21109					41	21	3	0	0	0	0.024723	1	4192	4192		12.207	0	1	291740			19498	333	13672	13698	21909	21909					0.026485448553899005
GKGVPRGRL	9	Unmodified	_GKGVPRGRL_					0	0	0		ENST00000515535.1_1_19:58596465-58596771:+|nuORF	ENST00000515535.1_1_19:58596465-58596771:+|nuORF	ENST00000515535.1_1_19:58596465-58596771:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2958068847656	2	470.295968	938.577383	2.5609	0.0012044	-3.2265	-0.0015174	-0.66562	-0.00031304	470.2945978495062	18.552	1.1784	18.552	18.284	19.463	0					56	23	4	0	0	0	0.99229	1	338	338		21.96	1.013	1	4513700			19499	15901	13673	13699	21910	21910					0.10563708356744428
GKGVRFSI	8	Unmodified	_GKGVRFSI_					0	0	0			REV__ENST00000340553.7_1_2:48602644-48602680:+|nuORF	REV__ENST00000340553.7_1_2:48602644-48602680:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.2587890625	2	432.25852	862.502486	-0.97632	-0.00042202	1.2845	0.00055525	0.30821	0.00013323	432.2589662317753	35.673	0.99632	35.63	35.176	36.172	-0.042458					60	26	3	0	0	0	0.77775	1	2750	2750		60.972	0.67798	1	2685400	+		19500	30619	13674	13700	21911	21911					0.06573525825524484
GKGVSYWRVP	10	Unmodified	_GKGVSYWRVP_					0	0	0		ENSG00000155729|ENST00000359878|KCTD18	ENSG00000155729|ENST00000359878|KCTD18	ENSG00000155729|ENST00000359878|KCTD18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8137817382812	2	574.81419	1147.61383	-0.81297	-0.00046731	0.48088	0.00027641	-0.33209	-0.00019089	574.8142476928223	48.133	0.45034	47.857	47.63	48.08	-0.27598					18	11	2	0	0	0	0.03519	1	4704	4704		25.574	0	1	214100			19501	6484	13675	13701	21912	21912					0.04592540462795114
GKGWAAVGIL	10	Unmodified	_GKGWAAVGIL_					0	0	0			REV__ENST00000550528.5_1_12:58133675-58140075:+|nuORF	REV__ENST00000550528.5_1_12:58133675-58140075:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.3097229003906	2	486.287277	970.560001	-0.7684	-0.00037366	2.8964	0.0014085	2.128	0.0010348	486.288981145984	44.241	1.2514	44.021	43.455	44.707	-0.21938					49	33	3	0	0	0	0.03519	1	4182	4182		34.173	0	1	728420	+		19502	23547	13676	13702	21913	21913					0.0735436803107632
GKGWKKTD	8	Unmodified	_GKGWKKTD_					0	0	0		ENST00000502976.5_1_3:128889105-128889285:-|nuORF	ENST00000502976.5_1_3:128889105-128889285:-|nuORF	ENST00000502976.5_1_3:128889105-128889285:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2689514160156	2	460.253434	918.492316	-0.37554	-0.00017285	0.53191	0.00024481	0.15637	7.1969E-05	460.2536652826155	48.666	0.49522	48.514	48.261	48.756	-0.15277					17	13	2	0	0	0	0.027866	1	4912	4912		21.96	0	1	98528			19503	15682	13677	13703	21914	21914					0.029809181002860896
GKGWTAPL	8	Unmodified	_GKGWTAPL_					0	0	0		ENST00000416880.5_1_3:42610473-42623377:-|nuORF;ENST00000450981.5_1_3:42610473-42628939:-|nuORF;ENST00000423701.6_1_3:42610473-42623377:-|nuORF;ENST00000417572.5_1_3:42610473-42642545:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2404479980469	2	415.231971	828.449388	-0.21931	-9.1064E-05	-4.2356	-0.0017588	-4.4549	-0.0018498	415.23058597232364	33.881	0.3243	33.937	33.771	34.096	0.056572					10	7	2	0	0	0	0.027866	1	2430	2430		7.6903	0	1	45647			19504	13906	13678	13704	21915	21915					0.028301480428467585
GKGWTWVE	8	Unmodified	_GKGWTWVE_					0	0	0			REV__nc|ENSG00000003393|Q96Q42-3|ALS2	REV__nc|ENSG00000003393|Q96Q42-3|ALS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.28466796875	2	481.74016	961.465767	-0.062756	-3.0232E-05	0.072098	3.4732E-05	0.0093415	4.5002E-06	481.7400434702294	54.812	0.30433	54.666	54.533	54.837	-0.14609					9	7	2	0	0	0	0.027866	1	5852	5852		11.511	0	1	79990	+		19505	19770	13679	13705	21916	21916					-0.01650770791047762
GKGWVRPQ	8	Unmodified	_GKGWVRPQ_					0	0	0		ENST00000301067.11_1_12:49413829-49413913:-|nuORF	ENST00000301067.11_1_12:49413829-49413913:-|nuORF	ENST00000301067.11_1_12:49413829-49413913:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2789001464844	2	464.261594	926.508634	0.19128	8.8805E-05	1.8647	0.00086569	2.0559	0.0009545	464.26224595474247	51.359	0.14771	51.359	51.248	51.395	0					5	3	2	0	0	0	0.027866	1	5431	5431		25.45	0	1	100310			19506	11919	13680	13706	21917	21917					0.04244044057031715
GKGYFQILKKK	11	Unmodified	_GKGYFQILKKK_					0	0	0			REV__ENST00000477822.2_1_6:153291978-153292182:-|nuORF	REV__ENST00000477822.2_1_6:153291978-153292182:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.5264892578125	3	437.271207	1308.79179	0.58879	0.00025746	-3.5315	-0.0015442	-2.9428	-0.0012868	437.2703551087916	53.031	0.19875	52.772	52.683	52.882	-0.25838					7	4	2	0	0	0	0.02477	1	5531	5531		8.4073	0	1	123280	+		19507	33345	13681	13707	21918	21918					0.14974790661949555
GKHFGTIL	8	Unmodified	_GKHFGTIL_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1;ENST00000541077.1_1_12:109895986-109915086:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF;ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-2|KCTD10	ENSG00000109079|ENST00000226225|TNFAIP1;ENSG00000110906|ENST00000228495|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.7550964355469	2	436.75307	871.491587	0.24742	0.00010806	3.7548	0.0016399	4.0022	0.001748	436.7545795399024	22.867	0.74244	22.678	22.466	23.208	-0.18942					44	15	4	0	0	0	0.845	1	862	862		55.504	5.4797	1	752680			19508	3074;2960	13682	13708	21919	21919					0.05070123451230302
GKICERGDSN	10	Unmodified	_GKICERGDSN_					0	0	0			REV__nc|ENSG00000198464|Q8WV37-2|ZNF480	REV__nc|ENSG00000198464|Q8WV37-2|ZNF480	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2981567382812	2	539.75093	1077.48731	-1.1108	-0.00059957	-2.5856	-0.0013956	-3.6964	-0.0019952	539.7485381626424	21.737	0.33533	21.737	21.63	21.965	0					9	6	2	0	0	0	0.03519	1	713	713		24.519	0	1	13861	+		19509	28425	13683	13709	21920	21920					-0.048337538246414624
GKIDAKVHS	9	Unmodified	_GKIDAKVHS_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000475487.1_1_3:58141790-58149086:+|nuORF	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7767028808594	2	477.771991	953.529429	0.15737	7.5187E-05	4.0925	0.0019553	4.2498	0.0020305	477.7738069288862	69.38	0.74245	69.129	68.74	69.483	-0.25063					41	17	3	0	0	0	0.024447	1	7998	7998		40.778	11.629	1	937230			19510	4979	13684	13710	21921	21921					0.0508058964603606
GKIGGRGRR	9	Unmodified	_GKIGGRGRR_					0	0	0			REV__ENST00000520674.5_1_5:141017085-141017214:+|nuORF	REV__ENST00000520674.5_1_5:141017085-141017214:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2436828613281	2	478.796666	955.57878	-0.37768	-0.00018083	2.8563	0.0013676	2.4786	0.0011868	478.7979082244567	40.73	0.58378	40.753	40.527	41.111	0.023006					43	16	4	0	0	0	0.024021	1	3511	3511		79.451	26.1	1	1099500	+		19511	34300	13685	13711	21922	21922					0.09921342445511527
GKILIEEAV	9	Unmodified	_GKILIEEAV_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2905578613281	2	486.292225	970.569897	-0.67395	-0.00032774	-3.3685	-0.0016381	-4.0424	-0.0019658	486.29071516082763	27.583	2.1938	27.583	27.215	29.408	0					129	55	5	0	0	0	0.80658	1	1566	1566		38.806	0	1	37180000	+		19512	29057	13686	13712	21923	21923					0.08343511245800528
GKIRSSPNL	9	Unmodified	_GKIRSSPNL_					0	0	0			REV__ENSG00000198900|ENST00000361337|TOP1	REV__ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7427673339844	2	486.285266	970.555979	-0.50545	-0.00024579	-2.2487	-0.0010935	-2.7541	-0.0013393	486.2837897645598	41.957	0.68076	41.983	41.746	42.427	0.026016					26	19	2	0	0	0	0.022882	1	3748	3748		85.161	49.543	1	1055100	+		19513	28512	13687	13713	21924	21924					0.06952278537380607
GKITRRES	8	Unmodified	_GKITRRES_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.77239990234375	2	473.775065	945.535577	0.38238	0.00018116	0.413	0.00019567	0.79538	0.00037683	473.7780080070681	23.205	1.9601	23.205	21.819	23.78	0					143	43	6	0	0	0	1.0009	1	860	860		37.159	6.6555	1	9113200			19514	9958	13688	13714	21925	21925					0.060631078775600145
GKIVELPVVL	10	Unmodified	_GKIVELPVVL_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8056640625	2	533.847167	1065.67978	-1.0687	-0.0005705	3.6539	0.0019506	2.5852	0.0013801	533.8484559642151	44.934	0.21643	44.934	44.862	45.079	0					7	5	2	0	0	0	0.03519	1	4345	4345		37.812	4.9991	1	134820	+		19515	23735	13689	13715	21926	21926					0.14956936585008407
GKIWLTVL	8	Unmodified	_GKIWLTVL_					0	0	0		ENSG00000165474|ENST00000382848|GJB2;ENSG00000187513|ENST00000342280|GJA4;ENSG00000182963|ENST00000592524|GJC1	ENSG00000165474|ENST00000382848|GJB2;ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.28826904296875	2	465.294571	928.574589	-0.85826	-0.00039934	-3.1859	-0.0014824	-4.0442	-0.0018817	465.29293895656264	61.839	0.32457	61.839	61.72	62.044	0					27	8	4	0	0	0	0.027866	1	7162	7162		26.796	0	1	1705800			19516	9181;7415	13690	13716	21927	21927					0.10744440179223602
GKIYFVIS	8	Unmodified	_GKIYFVIS_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.797607421875	2	463.770929	925.527304	0.29742	0.00013793	-3.4915	-0.0016192	-3.194	-0.0014813	463.7689149360322	58.449	0.45145	58.449	58.228	58.679	0					20	11	2	0	0	0	0.027866	1	6650	6650		38.806	9.6566	1	188130			19517	4752	13691	13717	21928	21928					0.06156160908221864
GKKADVIPVH	10	Unmodified	_GKKADVIPVH_					0	0	0		nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.3162231445312	2	532.316566	1062.61858	0.21535	0.00011463	-0.72811	-0.00038758	-0.51276	-0.00027295	532.3160888136841	21.886	0.76096	21.709	21.397	22.158	-0.17721					35	15	3	0	0	0	0.74632	2	732	732;744		64.207	2.0999	1	713370			19518	18290	13692	13718	21929;21930	21929					0.0897742460556401
GKKGGGGG	8	Unmodified	_GKKGGGGG_					0	0	0			REV__ENSG00000217236|ENST00000394967|SP9	REV__ENSG00000217236|ENST00000394967|SP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	618.3052368164062	1	617.33655	616.329273	0.11979	7.3951E-05	2.2032	0.0013601	2.323	0.0014341	617.3381206962517	83.418	0.47412	83.207	82.919	83.393	-0.21159					14	10	2	0	0	0	0.027866	1	10073	10073		4.3163	0	1	74743	+		19519	28821	13693	13719	21931	21931					0.00576159769093465
GKKGPNTY	8	Unmodified	_GKKGPNTY_					0	0	0			REV__ENSG00000205129|ENST00000378850|C4orf47	REV__ENSG00000205129|ENST00000378850|C4orf47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7318420410156	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	0.99042	1	12300	12300		38.806	6.8513	1	2327700	+		19520	28661	13694	13720	21932	21932					0.012929426918958598
GKKHDAVN	8	Unmodified	_GKKHDAVN_					0	0	0			REV__nc|ENSG00000196591|Q92769-3|HDAC2	REV__nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.269287109375	2	434.735409	867.456264	-0.16712	-7.2653E-05	0.62533	0.00027185	0.45821	0.0001992	434.73560765323356	23.791	0.59809	23.791	23.482	24.08	0					18	13	2	0	0	0	0.027866	1	936	936		29.15	0	1	62243	+		19521	28202	13695	13721	21933	21933					0.01723460923415132
GKKHILVIN	9	Unmodified	_GKKHILVIN_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.3271789550781	2	511.329476	1020.6444	-0.5065	-0.00025899	-4.1239	-0.0021087	-4.6304	-0.0023676	511.32724468367337	96.12	1.2357	96.12	95.778	97.014	0					68	28	4	0	0	0	0.96322	1	12256	12256		27.882	1.1893	1	1589000			19522	6479	13696	13722	21934	21934					0.13490318847834715
GKKKKKKSL	9	Unmodified	_GKKKKKKSL_					0	0	0			REV__ENSG00000136045|ENST00000412830|PWP1	REV__ENSG00000136045|ENST00000412830|PWP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.801025390625	2	522.866226	1043.7179	-0.43949	-0.0002298	1.6204	0.00084727	1.1809	0.00061747	522.870827430482	19.851	0.37542	19.732	19.591	19.967	-0.11872					12	7	2	0	0	0	0.024541	1	469	469		3.1592	0	1	40630	+		19523	23618	13697	13723	21935	21935					0.19778867290301605
GKKKQLEV	8	Unmodified	_GKKKQLEV_					0	0	0		VEPH1|p.A226G|1|0.12|ENSG00000197415|chr3:157428341-157428341|G/C|missense_variant	VEPH1|p.A226G|1|0.12|ENSG00000197415|chr3:157428341-157428341|G/C|missense_variant	VEPH1|p.A226G|1|0.12|ENSG00000197415|chr3:157428341-157428341|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.759033203125	2	465.292559	928.570566	-0.34061	-0.00015848	-1.6402	-0.00076316	-1.9808	-0.00092164	465.2922634378211	53.309	0.24229	53.309	53.232	53.474	0					10	6	2	0	0	0	0.027866	1	5781	5781		27.882	17.017	1	86794			19524	38141	13698	13724	21936	21936					0.10342350685516521
GKKLNIDSL	9	Unmodified	_GKKLNIDSL_					0	0	0			REV__nc|ENSG00000173848|Q7Z628-2|NET1	REV__nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7794494628906	2	494.295299	986.576045	0.29523	0.00014593	-1.2158	-0.00060095	-0.92053	-0.00045502	494.2946669095832	57.297	0.72778	57.133	56.78	57.508	-0.16431					36	19	3	0	0	0	0.019995	1	6439	6439		113.41	0	1	238280	+		19525	26815	13699	13725	21937	21937					0.08222029477337855
GKKRPAPG	8	Unmodified	_GKKRPAPG_					0	0	0		nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;nc|ENSG00000111641|P46087-3|NOP2	nc|ENSG00000111641|P46087-2|NOP2	nc|ENSG00000111641|P46087-2|NOP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9144287109375	2	405.750862	809.487171	-0.63282	-0.00025677	3.4927	0.0014172	2.8599	0.0011604	405.7513362763545	20.729	0.44666	20.506	20.266	20.712	-0.22344					10	8	2	0	0	0	0.027866	1	527	527		9.4706	0.64823	1	10102			19526	3128	13700	13726	21938	21938					0.07480659028317405
GKKSKRRKWLN	11	Unmodified	_GKKSKRRKWLN_					0	0	0		ENST00000379251.7_1_X:23801394-23801481:+|nuORF	ENST00000379251.7_1_X:23801394-23801481:+|nuORF	ENST00000379251.7_1_X:23801394-23801481:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.6243591308594	3	467.624755	1399.85244	-1.1469	-0.0005363	-1.0555	-0.00049356	-2.2023	-0.0010299	467.62416997487236	107.17	0.54526	107.04	106.79	107.33	-0.1346					60	21	4	0	0	0	1.0764	1	13296	13296		17.833	3.7471	1	487560			19527	13259	13701	13727	21939	21939					0.16850320764933713
GKKSRQLIE	9	Unmodified	_GKKSRQLIE_					0	0	0			REV__ENSG00000178035|ENST00000326739|IMPDH2	REV__ENSG00000178035|ENST00000326739|IMPDH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2982788085938	2	529.819473	1057.62439	-0.36598	-0.0001939	0.1349	7.1473E-05	-0.23108	-0.00012243	529.819447266783	50.557	0.66015	50.408	50.132	50.792	-0.14916					36	19	2	0	0	0	0.024405	1	5327	5327		35.618	11.416	1	3296000	+		19528	27160	13702	13728	21940	21940					0.09788523117254044
GKKSRQLIE	9	Unmodified	_GKKSRQLIE_					0	0	0			REV__ENSG00000178035|ENST00000326739|IMPDH2	REV__ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.819473	1057.62439	-1.1662	-0.00061789	0.8679	0.00045983	-0.29834	-0.00015806	529.8198220216223	50.359	0.75541	50.359	50.02	50.775	0	0.041647	0.00078635	NaN	45.972	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3994900	+		19529	27160	13702	13728							0.09788523117254044
GKKSRQLIE	9	Unmodified	_GKKSRQLIE_					0	0	0			REV__ENSG00000178035|ENST00000326739|IMPDH2	REV__ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.819473	1057.62439	-0.044565	-2.3611E-05	0.03236	1.7145E-05	-0.012205	-6.4665E-06	529.8193582457906	50.339	0.63411	50.233	49.972	50.606	-0.10558	-0.084177	-9.9016E-05	NaN	45.972	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	909660	+		19530	27160	13702	13728							0.09788523117254044
GKKSRQLIE	9	Unmodified	_GKKSRQLIE_					0	0	0			REV__ENSG00000178035|ENST00000326739|IMPDH2	REV__ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.819473	1057.62439	-0.22433	-0.00011886	0.25693	0.00013613	0.032596	1.727E-05	529.8195039045376	50.557	0.67358	50.277	49.875	50.549	-0.27977	-0.040203	0.00013895	NaN	45.972	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	783010	+		19531	27160	13702	13728							0.09788523117254044
GKKSRQLIE	9	Unmodified	_GKKSRQLIE_					0	0	0			REV__ENSG00000178035|ENST00000326739|IMPDH2	REV__ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.819473	1057.62439	0.28432	0.00015064	-0.29184	-0.00015462	-0.0075189	-3.9837E-06	529.8191509211591	50.48	0.44559	50.3	50.017	50.462	-0.18071	-0.017544	-0.00044255	NaN	45.972	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	852150	+		19532	27160	13702	13728							0.09788523117254044
GKKSSSHSL	9	Unmodified	_GKKSSSHSL_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7535400390625	2	465.753798	929.493044	0.28803	0.00013415	-0.18783	-8.7483E-05	0.1002	4.6666E-05	465.75354425163636	21.012	0.62769	20.835	20.581	21.209	-0.17721					30	12	4	0	0	0	0.56934	1	630	630		54.776	0	1	505830			19533	11033;17978	13703	13729	21941	21941					0.025477127493331864
GKKVAILLP	9	Unmodified	_GKKVAILLP_					0	0	0			REV__ENSG00000146809|ENST00000451215|ASB15	REV__ENSG00000146809|ENST00000451215|ASB15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.8016357421875	2	469.823495	937.632438	0.79029	0.00037129	-0.95225	-0.00044739	-0.16196	-7.6093E-05	469.822893522502	50.974	0.72647	50.862	50.6	51.327	-0.11163					43	18	3	0	0	0	0.024506	1	5227	5227		30.504	11.144	1	1347000	+		19534	24510	13704	13730	21942	21942					0.16112702104646814
GKKVAILLP	9	Unmodified	_GKKVAILLP_					0	0	0			REV__ENSG00000146809|ENST00000451215|ASB15	REV__ENSG00000146809|ENST00000451215|ASB15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.8013610839844	2	469.823495	937.632438	0.25549	0.00012004	-0.37336	-0.00017541	-0.11786	-5.5375E-05	469.8231667317953	51.208	0.76574	50.932	50.627	51.393	-0.27643					46	19	4	0	0	0	0.024386	1	5262	5262		25.45	0	1	1389400	+		19535	24510	13704	13730	21943	21943					0.16112702104646814
GKKVSHKS	8	Unmodified	_GKKVSHKS_					0	0	0		ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.792724609375	2	435.761426	869.5083	-0.19961	-8.6984E-05	0.18315	7.981E-05	-0.016463	-7.1738E-06	435.76141645878533	33.042	0.59952	32.876	32.679	33.278	-0.16565					28	14	3	0	0	0	0.027866	1	2341	2341		32.812	2.3088	1	173650			19536	10593	13705	13731	21944	21944					0.06832624337187099
GKLAKLLKT	9	Unmodified	_GKLAKLLKT_					0	0	0			REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29052734375	2	486.334227	970.653902	-0.49279	-0.00023966	-2.0718	-0.0010076	-2.5646	-0.0012472	486.33318559585683	27.529	0.21957	27.516	27.352	27.572	-0.012983					7	5	2	0	0	0	0.024541	1	1513	1513		19.997	0	1	39623	+		19537	35087	13706	13732	21945	21945					0.1674008713338253
GKLAKLLKT	9	Unmodified	_GKLAKLLKT_					0	0	0			REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	REV__ENST00000558123.5_1_15:41625112-41672381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2905578613281	2	486.334227	970.653902	-0.50156	-0.00024393	4.451	0.0021647	3.9494	0.0019207	486.3365803501067	27.629	0.37028	27.616	27.391	27.761	-0.012983					12	9	2	0	0	0	0.024539	1	1537	1537		35.618	6.4687	1	122780	+		19538	35087	13706	13732	21946	21946					0.1674008713338253
GKLEKGTI	8	Unmodified	_GKLEKGTI_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2589111328125	2	423.258185	844.501818	-0.016109	-6.8184E-06	0.5244	0.00022196	0.50829	0.00021514	423.25832798208506	41.902	1.0267	41.902	41.579	42.605	0					86	29	5	0	0	0	1.0106	1	3832	3832		35.618	0	1	10577000			19539	6165	13707	13733	21947	21947					0.07334686385820532
GKLETKVVL	9	Unmodified	_GKLETKVVL_					0	0	0			REV__ENST00000452211.5_2_3:48341958-48342785:-|nuORF	REV__ENST00000452211.5_2_3:48341958-48342785:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.8157043457031	2	493.815867	985.617182	-0.01645	-8.1233E-06	1.0439	0.0005155	1.0275	0.00050738	493.8161430642543	66.741	1.2941	66.741	66.461	67.755	0					65	32	4	0	0	0	1.0365	1	7955	7955		12.959	1.4482	1	2254700	+		19540	32733	13708	13734	21948	21948					0.12379790516808953
GKLGEPGPE	9	Unmodified	_GKLGEPGPE_					0	0	0			REV__ENSG00000171502|ENST00000370571|COL24A1	REV__ENSG00000171502|ENST00000370571|COL24A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7876892089844	2	442.229625	882.444697	0.32873	0.00014538	0.85981	0.00038023	1.1885	0.00052561	442.2294993448152	41.348	0.48648	41.224	41.051	41.537	-0.12317					15	13	2	0	0	0	0.024374	1	3681	3681		25.574	0	1	62159	+		19541	26575	13709	13735	21949	21949					-0.0012278089055826058
GKLKGGLGEL	10	Unmodified	_GKLKGGLGEL_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2966613769531	2	486.297842	970.581131	-0.21435	-0.00010424	0.050583	2.4599E-05	-0.16376	-7.9639E-05	486.29779633204737	67.313	0.7653	67.313	66.841	67.606	0					47	18	4	0	0	0	0.66532	1	8054	8054		69.628	0	1	2382400	+		19542	22797	13710	13736	21950	21950					0.09466333339958055
GKLLIQHSI	9	Unmodified	_GKLLIQHSI_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.2928771972656	2	504.813659	1007.61277	-1.0318	-0.00052089	0.17351	8.7592E-05	-0.85832	-0.00043329	504.8134988152634	44.34	1.0585	44.34	44.089	45.147	0					41	30	2	0	0	0	0.024523	1	4251	4251		21.96	3.6355	1	144640	+		19543	24168	13711	13737	21951	21951					0.10926326093886018
GKLLWFMV	8	Unmodified	_GKLLWFMV_					0	0	0			REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2955017089844	2	497.283149	992.551745	0.33407	0.00016613	3.2153	0.0015989	3.5493	0.001765	497.2839955855596	61.511	0.76323	61.511	61.032	61.796	0					28	19	2	0	0	0	0.027866	1	7072	7072		37.028	0	1	557390	+		19544	29462	13712	13738	21952	21952					0.055170977901184415
GKLSIPVKK	9	Unmodified	_GKLSIPVKK_					0	0	0		ENSG00000213523|ENST00000336283|SRA1;ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENSG00000213523|ENST00000336283|SRA1;ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENSG00000213523|ENST00000336283|SRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.290771484375	2	485.326402	968.638252	-0.85143	-0.00041322	1.3093	0.00063543	0.45785	0.00022221	485.32668976357536	25.239	0.35099	25.239	25.052	25.403	0					12	8	2	0	0	0	0.024487	1	1189	1189		24.203	4.8428	1	53463			19545	10508;17536	13713	13739	21953	21953					0.1526780061633417
GKMFLPQV	8	Unmodified	_GKMFLPQV_					0	0	0		ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2694091796875	2	460.257131	918.499709	-0.73864	-0.00033996	3.6678	0.0016882	2.9292	0.0013482	460.2587358554122	36.281	0.82452	36.281	36.063	36.887	0					56	22	3	0	0	0	0.027866	1	2937	2937		38.806	13.356	1	1583900			19546	3598	13714	13740	21954	21954					0.0371993437635183
GKMHEWNN	8	Unmodified	_GKMHEWNN_					0	0	0			REV__ENSG00000265354|ENST00000580018|TIMM23	REV__ENSG00000265354|ENST00000580018|TIMM23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3036193847656	2	508.224351	1014.43415	-0.61423	-0.00031217	-0.90544	-0.00046017	-1.5197	-0.00077234	508.2237317162518	56.235	0.78504	56.333	56.033	56.818	0.097897					22	21	2	0	0	0	0.027866	1	6263	6263		40.778	8.8233	1	77249	+		19547	29134	13715	13741	21955	21955					-0.07249086816659656
GKMLLIAIL	9	Unmodified	_GKMLLIAIL_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.29034423828125	2	486.319731	970.62491	-0.6292	-0.00030599	-0.48397	-0.00023537	-1.1132	-0.00054136	486.32023574905134	27.527	0.1818	27.527	27.398	27.58	0					6	4	2	0	0	0	0.024412	1	1517	1517		40.573	28.366	1	90908			19548	3794	13716	13742	21956	21956					0.13842226512713296
GKMPEKVLS	9	Unmodified	_GKMPEKVLS_					0	0	0		ENST00000419233.6_1_3:20225478-20227592:-|nuORF;ENST00000412997.5_1_3:20225478-20227559:-|nuORF	ENST00000419233.6_1_3:20225478-20227592:-|nuORF	ENST00000419233.6_1_3:20225478-20227592:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.79815673828125	2	494.778428	987.542302	-0.22527	-0.00011146	-2.3014	-0.0011387	-2.5267	-0.0012501	494.77732089999716	60.849	0.59856	60.849	60.546	61.144	0					24	15	2	0	0	0	0.024427	1	7048	7048		34.173	9.6534	1	365030			19549	13832	13717	13743	21957	21957					0.0480328471392113
GKMPTYSRAF	10	Unmodified	_GKMPTYSRAF_					0	0	0			REV__ENST00000463964.5_1_1:219347256-219385067:+|nuORF	REV__ENST00000463964.5_1_1:219347256-219385067:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7628784179688	2	579.292233	1156.56991	-0.7022	-0.00040678	3.6347	0.0021056	2.9325	0.0016988	579.2945562555973	39.946	0.34467	39.715	39.507	39.851	-0.23021					13	8	2	0	0	0	0.03519	1	3389	3389		18.262	0	1	149070	+		19550	32956	13718	13744	21958	21958					-0.002108120258526469
GKMREVYQDL	10	Unmodified	_GKMREVYQDL_					0	0	0			REV__ENST00000415545.2_1_1:92108345-92109332:+|nuORF	REV__ENST00000415545.2_1_1:92108345-92109332:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2405090332031	3	413.544779	1237.61251	0.4987	0.00020624	-3.7109	-0.0015346	-3.2122	-0.0013284	413.5433668115833	34.323	0.35773	34.323	34.05	34.408	0					10	8	2	0	0	0	0.03519	1	2515	2515		25.126	12.314	1	26013	+		19551	32056	13719	13745	21959	21959					0.0032053831173470826
GKMVKKPLE	9	Unmodified	_GKMVKKPLE_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.802001953125	2	515.309895	1028.60524	-2.0373	-0.0010499	2.574	0.0013264	0.53665	0.00027654	515.3112055118046	60.144	0.89111	60.223	59.756	60.647	0.078888					44	23	2	0	0	0	0.024323	1	6766	6766		44.117	1.7207	1	1629100	+		19552	24211	13720	13746	21960	21960					0.0920785050197992
GKNFALEDS	9	Unmodified	_GKNFALEDS_					0	0	0			REV__ENSG00000154016|ENST00000284154|GRAP	REV__ENSG00000154016|ENST00000284154|GRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.25323486328125	2	490.737814	979.461075	-0.42901	-0.00021053	3.1827	0.0015619	2.7537	0.0013513	490.7402564833248	43.324	0.98122	43.185	42.558	43.54	-0.13929					51	26	4	0	0	0	0.023417	1	3973	3973		49.442	12.282	1	248340	+		19553	24926	13721	13747	21961	21961					-0.029476997244842096
GKNKKKKP	8	Unmodified	_GKNKKKKP_					0	0	0			REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.279052734375	2	464.308544	926.602535	0.44993	0.00020891	0.81777	0.0003797	1.2677	0.0005886	464.30897307695153	51.712	0.36214	51.593	51.357	51.719	-0.11875					17	9	2	0	0	0	0.027866	1	5308	5308		26.796	8.4717	1	215340	+		19554	20860	13722	13748	21962	21962					0.1362976315931519
GKNNKPVPQ	9	Unmodified	_GKNNKPVPQ_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7947082519531	2	491.277441	980.540328	-0.38399	-0.00018864	1.7404	0.00085501	1.3564	0.00066637	491.27796847966675	28.969	0.62808	29.05	28.784	29.412	0.080811					34	15	3	0	0	0	0.024323	1	1658	1658		53.351	2.1588	1	613220	+		19555	25018	13723	13749	21963	21963					0.049279920203161964
GKNPVVLR	8	Unmodified	_GKNPVVLR_					0	0	0			REV__nc|ENSG00000164970|Q8IW50-3|FAM219A	REV__nc|ENSG00000164970|Q8IW50-3|FAM219A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7568359375	2	441.779619	881.544686	0.15235	6.7303E-05	0.34193	0.00015106	0.49428	0.00021836	441.77957285734425	21.195	0.48528	21.267	21.106	21.591	0.071489					15	9	2	0	0	0	0.027866	1	570	570		30.504	6.3009	1	26069	+		19556	25827	13724	13750	21964	21964					0.09917501233883286
GKNRRLFE	8	Unmodified	_GKNRRLFE_					0	0	0			REV__ENSG00000099995|ENST00000215793|SF3A1	REV__ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.28216552734375	2	510.290882	1018.56721	0.85226	0.0004349	-3.5861	-0.0018299	-2.7338	-0.001395	510.290309197961	96.433	0.9809	96.435	96.035	97.016	0.0020676					31	22	2	0	0	0	0.027866	1	12168	12168		25.45	0	1	52471	+		19557	21030	13725	13751	21965	21965					0.058671006315080376
GKPAVGMGPFE	11	Unmodified	_GKPAVGMGPFE_					0	0	0			REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.2750854492188	2	545.273509	1088.53247	-0.30268	-0.00016504	1.6612	0.00090583	1.3586	0.00074079	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.48498	2	9561	9561;9573		77.318	5.4401	1	57394000	+		19558	31146	13726	13752	21966;21967	21966					-0.008259032914338604
GKPAVGMGPFE	11	Unmodified	_GKPAVGMGPFE_					0	0	0			REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	REV__ENST00000370982.3_1_1:68169747-68169855:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.2748413085938	2	545.273509	1088.53247	-0.96677	-0.00052716	2.5394	0.0013847	1.5727	0.00085753	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.20553	1	9538	9538		98.629	16.389	1	52905000	+		19559	31146	13726	13752	21968	21968					-0.008259032914338604
GKPGGRTQ	8	Unmodified	_GKPGGRTQ_					0	0	0		ENST00000496184.1_1_7:1478314-1478395:-|nuORF	ENST00000496184.1_1_7:1478314-1478395:-|nuORF	ENST00000496184.1_1_7:1478314-1478395:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073059082031	2	400.722301	799.43005	1.5375	0.00061612	4.1475	0.001662	5.6851	0.0022781	400.7238110153049	23.92	0.70097	23.739	23.371	24.072	-0.18089					29	15	3	0	0	0	0.027866	1	959	959		27.882	4.8398	1	509190			19560	15560	13727	13753	21969	21969					0.022311917519346025
GKPGVKLI	8	Unmodified	_GKPGVKLI_					0	0	0		ENST00000355295.4_1_9:100193224-100193323:+|nuORF	ENST00000355295.4_1_9:100193224-100193323:+|nuORF	ENST00000355295.4_1_9:100193224-100193323:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2486572265625	2	406.273638	810.532724	0.21839	8.8728E-05	-1.0923	-0.00044378	-0.87392	-0.00035505	406.2740966516717	87.774	0.16471	87.595	87.491	87.656	-0.17875					5	3	2	0	0	0	0.027866	1	10669	10669		18.324	0	1	56058			19561	12643	13728	13754	21970	21970					0.11987884490702072
GKPLPPKT	8	Unmodified	_GKPLPPKT_					0	0	0		ENSG00000265763|ENST00000585316|ZNF488	ENSG00000265763|ENST00000585316|ZNF488	ENSG00000265763|ENST00000585316|ZNF488	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	419.2507019042969	2	419.263271	836.511988	-0.79242	-0.00033223	-2.188	-0.00091733	-2.9804	-0.0012496	419.26136779245167	25.943	0.25381	25.779	25.544	25.798	-0.16331					7	5	2	0	0	0	0.027866	1	1235	1235		20.947	9.4359	1	23201			19562	10968	13729	13755	21971	21971					0.08719294111040199
GKPLRPPSK	9	Unmodified	_GKPLRPPSK_					0	0	0			REV__ABRA|p.E87K|1|0.13|ENSG00000174429|chr8:106769932-106769932|C/T|missense_variant	REV__ABRA|p.E87K|1|0.13|ENSG00000174429|chr8:106769932-106769932|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.25323486328125	2	490.306001	978.597449	-0.016707	-8.1914E-06	0.69925	0.00034284	0.68254	0.00033465	490.3070510748252	42.791	0.2172	42.791	42.715	42.932	0					6	5	2	0	0	0	0.024457	1	3985	3985		29.15	6.1071	1	51692	+		19563	19050	13730	13756	21972	21972					0.1072945929670368
GKPLSPGQIK	10	Unmodified	_GKPLSPGQIK_					0	0	0		ENST00000570443.2_1_6:37475385-37503375:+|nuORF	ENST00000570443.2_1_6:37475385-37503375:+|nuORF	ENST00000570443.2_1_6:37475385-37503375:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8095703125	2	512.811116	1023.60768	0.39494	0.00020253	-3.1059	-0.0015927	-2.711	-0.0013902	512.8093863436535	17.528	0.41841	17.385	17.183	17.602	-0.14278					16	8	3	0	0	0	1.0816	1	167	167		35.152	6.8977	1	148590			19564	17030	13731	13757	21973	21973					0.09682022231277188
GKPMELIIG	9	Unmodified	_GKPMELIIG_					0	0	0		ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.277587890625	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.94809	1	9971	9971		29.15	0	1	7158600			19565	3056	13732	13758	21974	21974					0.0564818620226788
GKPNTRQQLRR	11	Unmodified	_GKPNTRQQLRR_					0	0	0			REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF	REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.93267822265625	3	451.932248	1352.77491	0.95574	0.00043193	0.15955	7.2105E-05	1.1153	0.00050404	451.93215521600763	97.035	2.3592	96.912	95.552	97.912	-0.12368					183	54	5	0	0	0	1.044	1	12013	12013		26.75	4.1881	1	477030	+		19566	19869	13733	13759	21975	21975					0.11263682828712263
GKPSARVH	8	Unmodified	_GKPSARVH_					0	0	0		ENST00000276816.8_1_8:146156998-146157223:-|nuORF	ENST00000276816.8_1_8:146156998-146157223:-|nuORF	ENST00000276816.8_1_8:146156998-146157223:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.24700927734375	2	426.245944	850.477334	0.58134	0.0002478	1.4806	0.00063108	2.0619	0.00087888	426.24742133734424	103.3	1.5975	103.17	102.86	104.46	-0.12724					72	39	5	0	0	0	1.0239	1	12849	12849		33.516	5.2613	1	863380			19567	11696	13734	13760	21976	21976					0.0461147102294035
GKPSARVH	8	Unmodified	_GKPSARVH_					0	0	0		ENST00000276816.8_1_8:146156998-146157223:-|nuORF	ENST00000276816.8_1_8:146156998-146157223:-|nuORF	ENST00000276816.8_1_8:146156998-146157223:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.24737548828125	2	426.245944	850.477334	0.64102	0.00027323	0.92915	0.00039605	1.5702	0.00066928	426.2469351415712	103.39	0.60685	103.21	102.87	103.48	-0.17034					42	14	4	0	0	0	1.0239	1	12848	12848		33.516	6.7195	1	752580			19568	11696	13734	13760	21977	21977					0.0461147102294035
GKPSPVLKP	9	Unmodified	_GKPSPVLKP_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;nc|ENSG00000249471|Q6AW86-2|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2198181152344	2	461.789653	921.564752	0.91557	0.0004228	-0.2142	-9.8914E-05	0.70137	0.00032389	461.7892589449626	59.931	0.98063	59.931	59.675	60.656	0					43	26	3	0	0	0	0.024288	1	6899	6899		52.937	0	1	1384600			19569	10840	13735	13761	21978	21978					0.10083252173842538
GKPSPVLKP	9	Unmodified	_GKPSPVLKP_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;nc|ENSG00000249471|Q6AW86-2|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2203063964844	2	461.789653	921.564752	-0.23078	-0.00010657	1.0148	0.00046864	0.78405	0.00036207	461.7897945220657	59.823	0.89032	59.902	59.611	60.501	0.078884					43	23	3	0	0	0	0.023842	1	6821	6821		49.536	0	1	944480			19570	10840	13735	13761	21979	21979					0.10083252173842538
GKPTGQGLG	9	Unmodified	_GKPTGQGLG_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.5791015625	2	407.72451	813.434466	0.17502	7.136E-05	0.41798	0.00017042	0.593	0.00024178	407.7245217987301	34.547	0.69296	34.543	34.152	34.845	-0.0045624					38	17	3	0	0	0	0.024323	1	2537	2537		53.351	9.2347	1	184940	+		19571	21513	13736	13762	21980	21980					0.02028656174866228
GKPTLIKTK	9	Unmodified	_GKPTLIKTK_					0	0	0			REV__ENST00000582655.5_1_17:27237161-27237842:-|nuORF	REV__ENST00000582655.5_1_17:27237161-27237842:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.772216796875	2	493.32386	984.633166	-0.63688	-0.00031419	-0.76193	-0.00037588	-1.3988	-0.00069007	493.3235647210488	32.93	0.41668	32.937	32.664	33.08	0.0066261					21	10	3	0	0	0	0.024418	1	2315	2315		37.812	14.769	1	93829	+		19572	35542	13737	13763	21981	21981					0.14023496753702602
GKPVKCHL	8	Unmodified	_GKPVKCHL_					0	0	0			REV__ENST00000503766.5_1_6:43190510-43190918:+|nuORF	REV__ENST00000503766.5_1_6:43190510-43190918:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.7536926269531	2	441.254923	880.495293	-0.23445	-0.00010345	1.8142	0.0008005	1.5797	0.00069705	441.25559054679786	27.677	0.71648	27.664	27.352	28.069	-0.012983					24	18	2	0	0	0	0.027866	1	1541	1541		35.201	16.876	1	669160	+		19573	33966	13738	13764	21982	21982					0.05026469953429569
GKPVKCHL	8	Unmodified	_GKPVKCHL_					0	0	0			REV__ENST00000503766.5_1_6:43190510-43190918:+|nuORF	REV__ENST00000503766.5_1_6:43190510-43190918:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	441.254923	880.495293	-0.58541	-0.00025831	2.2362	0.00098672	1.6508	0.0007284	441.25580981720276	27.471	0.88559	27.553	27.282	28.168	0.081293	-0.055562	0.00020629	NaN	35.201	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660500	+		19574	33966	13738	13764							0.05026469953429569
GKQHSKLLS	9	Unmodified	_GKQHSKLLS_					0	0	0		ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.28814697265625	2	499.293091	996.571629	0.33092	0.00016523	-0.92421	-0.00046145	-0.59329	-0.00029622	499.29263915670714	24.591	0.95656	24.67	24.048	25.005	0.078346					48	20	4	0	0	0	0.024374	1	960	960		32.812	4.9302	1	360060			19575	17051	13739	13765	21983	21983					0.07320565054419603
GKQHSKLLS	9	Unmodified	_GKQHSKLLS_					0	0	0		ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.293091	996.571629	-0.19757	-9.8645E-05	2.6751	0.0013356	2.4775	0.001237	499.29428599401194	24.765	0.35114	24.59	24.425	24.777	-0.17484	-0.067828	0.0023752	NaN	32.812	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58304			19576	17051	13739	13765							0.07320565054419603
GKQHSKLLS	9	Unmodified	_GKQHSKLLS_					0	0	0		ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.293091	996.571629	1.4512	0.00072457	1.6843	0.00084094	3.1355	0.0015655	499.2936489092702	24.837	0.30602	24.665	24.471	24.777	-0.17151	0.0074369	0.0013858	NaN	32.812	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79690			19577	17051	13739	13765							0.07320565054419603
GKQPKGGSSVP	11	Unmodified	_GKQPKGGSSVP_					0	0	0			REV__ENST00000505569.5_1_5:176948978-176952218:-|nuORF	REV__ENST00000505569.5_1_5:176948978-176952218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2896728515625	2	521.288005	1040.56146	-0.22229	-0.00011588	-2.7428	-0.0014298	-2.9651	-0.0015456	521.2861604997623	37.192	0.38147	37.224	36.996	37.377	0.032269					11	9	2	0	0	0	0.024736	1	2978	2978		44.377	22.417	1	55593	+		19578	24456	13740	13766	21984	21984					0.042799573291858906
GKQPLLSMCP	10	Carbamidomethyl (C),Oxidation (M)	_GKQPLLSM(Oxidation (M))C(Carbamidomethyl (C))P_	GKQPLLSMC(1)P	GKQPLLSM(1)CP	GKQPLLSMC(70)P	GKQPLLSM(70)CP	0	1	1		nc|ENSG00000197421|A6NGU5|GGT3P;ENSG00000274252|ENST00000619998|GGTLC3	nc|ENSG00000197421|A6NGU5|GGT3P	nc|ENSG00000197421|A6NGU5|GGT3P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.785888671875	2	573.785927	1145.5573	0.92398	0.00053017	-1.7336	-0.00099474	-0.80966	-0.00046457	573.7848207369756	70.816	0.98943	70.524	70.2	71.189	-0.29291					59	25	3	0	0	0	0.66532	1	8515	8515		69.628	7.5202	1	2618500			19579	18635	13741	13767	21985	21985	241	591			-0.00965591480371586
GKQPLLSMCP	10	Carbamidomethyl (C),Oxidation (M)	_GKQPLLSM(Oxidation (M))C(Carbamidomethyl (C))P_	GKQPLLSMC(1)P	GKQPLLSM(1)CP	GKQPLLSMC(60)P	GKQPLLSM(60)CP	0	1	1		nc|ENSG00000197421|A6NGU5|GGT3P;ENSG00000274252|ENST00000619998|GGTLC3	nc|ENSG00000197421|A6NGU5|GGT3P	nc|ENSG00000197421|A6NGU5|GGT3P	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.7847900390625	2	573.785927	1145.5573	-0.62207	-0.00035694	-0.03171	-1.8195E-05	-0.65378	-0.00037513	573.7857492201204	70.452	1.039	70.464	70.202	71.24	0.012421					49	26	3	0	0	0	0.80817	1	8427	8427		60.118	6.7668	1	3020800			19580	18635	13741	13767	21986	21986	241	591			-0.00965591480371586
GKQPRALL	8	Unmodified	_GKQPRALL_					0	0	0		ENST00000442007.1_1_6:73972946-73980200:+|nuORF	ENST00000442007.1_1_6:73972946-73980200:+|nuORF	ENST00000442007.1_1_6:73972946-73980200:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.25909423828125	2	441.779619	881.544686	-0.15514	-6.8536E-05	0.49683	0.00021949	0.34169	0.00015095	441.77964489981997	26.388	0.71284	26.469	26.21	26.923	0.081293					30	16	3	0	0	0	0.027866	1	1355	1355		19.36	7.1531	1	182330			19581	14372	13742	13768	21987	21987					0.09917501233894654
GKQPRALL	8	Unmodified	_GKQPRALL_					0	0	0		ENST00000442007.1_1_6:73972946-73980200:+|nuORF	ENST00000442007.1_1_6:73972946-73980200:+|nuORF	ENST00000442007.1_1_6:73972946-73980200:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.779619	881.544686	-0.24987	-0.00011039	0.57655	0.00025471	0.32668	0.00014432	441.77970955726704	26.489	0.49276	26.466	26.283	26.776	-0.023088	-0.00147	3.5098E-05	NaN	19.36	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213740			19582	14372	13742	13768							0.09917501233894654
GKQQPENI	8	Unmodified	_GKQQPENI_					0	0	0		ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.75616455078125	2	457.240524	912.466495	-0.12419	-5.6785E-05	-0.17171	-7.8513E-05	-0.2959	-0.0001353	457.2402029206138	31.571	0.6056	31.583	31.257	31.863	0.011799					24	14	3	0	0	0	0.027866	1	2060	2060		29.15	0	1	169770			19583	4969	13743	13769	21988	21988					0.0067602385800000775
GKQTLLLGFV	10	Unmodified	_GKQTLLLGFV_					0	0	0			REV__ENSG00000164761|ENST00000297350|TNFRSF11B	REV__ENSG00000164761|ENST00000297350|TNFRSF11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3270874023438	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	1.089	1	12657	12657		34.173	0.25091	1	22353000	+		19584	25800	13744	13770	21989	21989					0.10939479408125408
GKRAKKQL	8	Unmodified	_GKRAKKQL_					0	0	0			REV__nc|ENSG00000132613|Q765P7-2|MTSS2	REV__nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.25347900390625	2	464.806168	927.597784	-0.12054	-5.6029E-05	3.2902	0.0015293	3.1697	0.0014733	464.8075410157211	78.148	0.72897	77.992	77.741	78.47	-0.15591					28	16	3	0	0	0	0.027866	1	9332	9332		42.474	19.432	1	294470	+		19585	36662	13745	13771	21990	21990					0.1310887901655633
GKRERLRHR	9	Unmodified	_GKRERLRHR_					0	0	0			REV__chrX:152932971-152945267|270|11.77|0.62|4.26|+|0|ZNF185,ZNF185|1	REV__chrX:152932971-152945267|270|11.77|0.62|4.26|+|0|ZNF185,ZNF185|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3666381835938	2	604.365779	1206.717	-1.0438	-0.00063086	2.7724	0.0016756	1.7286	0.0010447	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	0.98925	1	13210	13210		15.642	0	1	4517100	+		19586	19483	13746	13772	21991	21991					0.12191465693945247
GKRFGQSSVL	10	Unmodified	_GKRFGQSSVL_					0	0	0		ENSG00000169957|ENST00000380412|ZNF768	ENSG00000169957|ENST00000380412|ZNF768	ENSG00000169957|ENST00000380412|ZNF768	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.8051147460938	2	539.803823	1077.59309	-0.65765	-0.000355	4.0209	0.0021705	3.3633	0.0018155	539.8058318868327	41.459	1.2073	41.482	41.182	42.39	0.023006					97	34	5	0	0	0	0.62431	1	3690	3690		74.255	2.9593	1	5215900			19587	7997	13747	13773	21992	21992					0.0573995008314796
GKRFSLDF	8	Unmodified	_GKRFSLDF_					0	0	0		ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1;YY2|p.R329H|1|0.11|ENSG00000230797|chrX:21857470-21857470|G/A|missense_variant;ENST00000554579.1_1_14:100742787-100743934:+|nuORF;ENSG00000179059|ENST00000326866|ZFP42	ENSG00000230797|ENST00000429584|YY2;ENSG00000179059|ENST00000326866|ZFP42	ENSG00000230797|ENST00000429584|YY2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2617492675781	2	485.261259	968.507966	0.25785	0.00012513	-0.24171	-0.00011729	0.016141	7.8326E-06	485.2610058782707	56.813	0.8862	56.611	56.25	57.136	-0.20209					52	23	3	0	0	0	0.89627	1	6159	6159		51.335	1.3109	1	4812500			19588	10694;8867	13748	13774	21993	21993					0.0224520461732709
GKRGKKAL	8	Unmodified	_GKRGKKAL_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.276611328125	2	429.287611	856.56067	-0.33403	-0.00014339	4.2784	0.0018366	3.9443	0.0016933	429.28919420113715	43.233	0.23237	43.007	42.793	43.025	-0.22597					9	5	2	0	0	0	0.027866	1	3921	3921		35.201	9.7505	1	102550	+		19589	26605	13749	13775	21994	21994					0.126652074707863
GKRGYLTP	8	Unmodified	_GKRGYLTP_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.23223876953125	2	446.255977	890.497401	-1.4385	-0.00064196	2.2713	0.0010136	0.8327	0.0003716	446.2577034799864	38.605	1.2501	38.632	37.817	39.067	0.027275					43	34	2	0	0	0	0.027866	1	3059	3059		29.15	11.785	1	438900			19590	1387	13750	13776	21995	21995					0.04777221962876865
GKRLSGEKP	9	Unmodified	_GKRLSGEKP_					0	0	0			REV__ENST00000538829.5_2_12:6797361-6798049:-|nuORF	REV__ENST00000538829.5_2_12:6797361-6798049:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.74267578125	2	486.285266	970.555979	-0.3198	-0.00015551	-2.3156	-0.001126	-2.6354	-0.0012815	486.28383988399594	41.985	0.74905	41.853	41.603	42.352	-0.1322					29	21	2	0	0	0	0.024261	1	3807	3807		74.255	7.8258	1	1538700	+		19591	34721	13751	13777	21996	21996					0.06952278537369239
GKRMLDFVL	9	Unmodified	_GKRMLDFVL_					0	0	0			REV__nc|ENSG00000156873|P15735-2|PHKG2	REV__nc|ENSG00000156873|P15735-2|PHKG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8056030273438	2	539.807519	1077.60049	-0.33993	-0.0001835	-3.3062	-0.0017847	-3.6462	-0.0019682	539.8055183012792	41.271	1.2776	41.271	40.944	42.222	0					90	36	4	0	0	0	0.16468	2	3712	3699;3712		96.19	18.873	1	5442000	+		19592	25095	13752	13778	21997;21998	21998					0.064789663592137
GKRMLDFVL	9	Unmodified	_GKRMLDFVL_					0	0	0			REV__nc|ENSG00000156873|P15735-2|PHKG2	REV__nc|ENSG00000156873|P15735-2|PHKG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.805908203125	2	539.807519	1077.60049	-0.47974	-0.00025897	-3.0629	-0.0016534	-3.5426	-0.0019123	539.8056242578151	41.422	1.1113	41.299	40.98	42.091	-0.12317					83	31	4	0	0	0	0.18915	3	3700	3689;3700;3711		90.777	18.899	1	4848700	+		19593	25095	13752	13778	21999;22000;22001	22000					0.064789663592137
GKRMLDFVL	9	Unmodified	_GKRMLDFVL_					0	0	0			REV__nc|ENSG00000156873|P15735-2|PHKG2	REV__nc|ENSG00000156873|P15735-2|PHKG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.8056640625	2	539.807519	1077.60049	-0.65765	-0.000355	-2.8274	-0.0015263	-3.4851	-0.0018813	539.8058318868327	41.459	1.2073	41.482	41.182	42.39	0.023006					97	34	5	0	0	0	0.27161	1	3667	3667		79.451	2.6769	1	5215900	+		19594	25095	13752	13778	22002	22002					0.064789663592137
GKRMLDFVL	9	Unmodified	_GKRMLDFVL_					0	0	0			REV__nc|ENSG00000156873|P15735-2|PHKG2	REV__nc|ENSG00000156873|P15735-2|PHKG2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	539.807519	1077.60049	-0.33993	-0.0001835	-3.3062	-0.0017847	-3.6462	-0.0019682	539.8055183012792	41.271	1.2776	41.271	40.944	42.222	0	-0.079253	-0.00033855	NaN	96.19	90	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5442000	+		19595	25095	13752	13778							0.064789663592137
GKRQLWLAH	9	Unmodified	_GKRQLWLAH_					0	0	0			REV__nc|ENSG00000112038|P35372-18|OPRM1	REV__nc|ENSG00000112038|P35372-18|OPRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.79833984375	2	554.82235	1107.63015	0.28499	0.00015812	-2.3092	-0.0012812	-2.0242	-0.0011231	554.8210317002851	21.66	0.43084	21.483	21.209	21.64	-0.17721					14	8	2	0	0	0	0.024535	1	680	680		25.45	7.1881	1	54167	+		19596	36568	13753	13779	22003	22003					0.08063666419548099
GKRRKERL	8	Unmodified	_GKRRKERL_					0	0	0		RNGTT|p.G235Vfs*7|1|0.13|ENSG00000111880|chr6:88891896-88891896|C/-|frameshift_variant;nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	RNGTT|p.G235Vfs*7|1|0.13|ENSG00000111880|chr6:88891896-88891896|C/-|frameshift_variant	RNGTT|p.G235Vfs*7|1|0.13|ENSG00000111880|chr6:88891896-88891896|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2450561523438	2	521.833249	1041.65194	-0.061472	-3.2078E-05	2.0403	0.0010647	1.9788	0.0010326	521.8342082111171	50.05	0.58899	50.131	49.954	50.543	0.08099					29	17	2	0	0	0	0.027866	1	5215	5215		44.117	18.667	1	680570			19597	3155	13754	13780	22004	22004					0.13278471168109718
GKRTKGGH	8	Unmodified	_GKRTKGGH_					0	0	0		ENST00000411753.1_1_3:31495669-31495876:+|nuORF	ENST00000411753.1_1_3:31495669-31495876:+|nuORF	ENST00000411753.1_1_3:31495669-31495876:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.74407958984375	2	420.743568	839.472583	-0.36885	-0.00015519	0.33052	0.00013906	-0.038333	-1.6128E-05	420.74375652988215	27.567	1.6254	27.554	27.241	28.867	-0.012983					105	40	4	0	0	0	1.0338	1	1492	1492		31.955	0	1	8988000			19598	13808	13755	13781	22005	22005					0.04642586880174804
GKRTKGGH	8	Unmodified	_GKRTKGGH_					0	0	0		ENST00000411753.1_1_3:31495669-31495876:+|nuORF	ENST00000411753.1_1_3:31495669-31495876:+|nuORF	ENST00000411753.1_1_3:31495669-31495876:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.7438049316406	2	420.743568	839.472583	-0.63911	-0.0002689	0.56997	0.00023981	-0.069137	-2.9089E-05	420.7438491452349	27.388	1.8086	27.469	27.136	28.945	0.081291					105	45	4	0	0	0	1.0338	1	1476	1476		31.955	3.7006	1	10915000			19599	13808	13755	13781	22006	22006					0.04642586880174804
GKSFEKSTV	9	Unmodified	_GKSFEKSTV_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7654724121094	2	491.763832	981.513111	3.2663	0.0016062	1.5891	0.00078144	4.8553	0.0023877	491.7644792246869	18.806	0.73767	18.869	18.649	19.386	0.063307					25	14	2	0	0	0	0.96322	1	308	308		27.882	0.83493	1	82671			19600	1710	13756	13782	22007	22007					0.021614636892991257
GKSFEKSTV	9	Unmodified	_GKSFEKSTV_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	491.763832	981.513111	2.2906	0.0011264	2.728	0.0013415	5.0186	0.002468	491.7649586623359	18.583	0.68783	18.583	18.333	19.021	0	-0.13093	-0.00037048	NaN	27.882	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80472			19601	1710	13756	13782							0.021614636892991257
GKSFKWVI	8	Unmodified	_GKSFKWVI_					0	0	0			REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.28662109375	2	482.78437	963.554188	0.81481	0.00039338	1.5037	0.00072597	2.3185	0.0011193	482.7873420010062	20.431	0.58948	20.235	19.993	20.582	-0.19577					29	11	4	0	0	0	0.99042	1	553	553		38.806	5.2906	1	284290	+		19602	19710	13757	13783	22008	22008					0.07095269519413705
GKSIATSPLG	10	Unmodified	_GKSIATSPLG_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7767639160156	2	465.766374	929.518196	-0.57783	-0.00026913	0.95503	0.00044482	0.3772	0.00017569	465.7666746180467	49.441	0.48876	49.515	49.242	49.731	0.074196					30	12	3	0	0	0	0.03519	1	5024	5024		40.778	7.9657	1	372830			19603	6348	13758	13784	22009	22009					0.05061767551922003
GKSILQVL	8	Unmodified	_GKSILQVL_					0	0	0		ENST00000599328.1_1_19:53744649-53744913:-|nuORF	ENST00000599328.1_1_19:53744649-53744913:-|nuORF	ENST00000599328.1_1_19:53744649-53744913:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7376708984375	2	429.276378	856.538203	-0.7582	-0.00032548	1.4197	0.00060944	0.66149	0.00028396	429.27694983115055	25.073	0.49986	25.073	24.786	25.285	0					16	11	2	0	0	0	0.027866	1	1127	1127		47.916	5.4411	1	102430			19604	17491	13759	13785	22010	22010					0.1041956328251672
GKSIYGEKF	9	Unmodified	_GKSIYGEKF_					0	0	0		ENST00000482002.1_1_7:28318844-28319318:-|nuORF;ENST00000450091.1_1_10:107445275-107445446:-|nuORF;ENST00000567565.3_1_15:76039287-76039500:+|nuORF;ENST00000420099.1_1_13:91924337-91924628:-|nuORF;nc|ENSG00000196262|P62937-2|PPIA;ENST00000603675.1_1_3:178211127-178211487:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENSG00000196262|ENST00000468812|PPIA	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.773193359375	2	514.7742	1027.53385	0.092919	4.7832E-05	-2.7103	-0.0013952	-2.6174	-0.0013474	514.7726487983678	18.556	0.73685	18.424	18.203	18.94	-0.13147					30	14	3	0	0	0	0.98128	1	290	290		24.203	1.1603	1	193510			19605	15242	13760	13786	22011	22011					0.021180540689329064
GKSNEWRLK	9	Unmodified	_GKSNEWRLK_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2987060546875	2	559.309272	1116.60399	-0.87929	-0.0004918	-0.42279	-0.00023647	-1.3021	-0.00072826	559.308965225144	28.296	0.37735	28.296	28.113	28.49	0					15	8	2	0	0	0	0.024511	1	1652	1652		25.574	0	1	185840			19606	1967	13761	13787	22012	22012					0.05035352457389308
GKSVFYWW	8	Unmodified	_GKSVFYWW_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8155517578125	2	536.766178	1071.5178	0.046612	2.502E-05	-0.32435	-0.0001741	-0.27774	-0.00014908	536.7658344058356	71.431	0.18882	71.431	71.339	71.528	0					5	4	2	0	0	0	0.027866	1	8666	8666		25.45	15.745	1	36361	+		19607	22401	13762	13788	22013	22013					-0.015096073772838281
GKSVRVHVQ	9	Unmodified	_GKSVRVHVQ_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;MSH6|p.E528*|1|0.12|ENSG00000116062|chr2:47799562-47799575|CTGGAAGGTGATCC/-|frameshift_variant;ENST00000538136.1_1_2:48011218-48025765:+|nuORF	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.8241882324219	2	505.298707	1008.58286	-0.34728	-0.00017548	1.3815	0.00069806	1.0342	0.00052258	505.29925560927273	43.114	0.21524	42.974	42.885	43.1	-0.13929					9	5	2	0	0	0	0.024374	1	4007	4007		25.574	15.309	1	131740			19608	3516	13763	13789	22014	22014					0.0789138714856108
GKTFSLDD	8	Unmodified	_GKTFSLDD_					0	0	0			REV__FGR|p.T97S|1|0.19|ENSG00000000938|chr1:27623082-27623082|T/A|missense_variant	REV__FGR|p.T97S|1|0.19|ENSG00000000938|chr1:27623082-27623082|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	2	441.713808	881.413062	-0.54386	-0.00024023	2.8611	0.0012638	2.3172	0.0010236	441.7147328139197	31.443	3.4401	31.443	29.773	33.213	0					251	85	5	0	0	0	1.0009	1	2078	2078		37.159	5.2042	1	2816000	+		19609	36042	13764	13790	22015	22015					-0.03238773644511639
GKTKARRAAM	10	Unmodified	_GKTKARRAAM_					0	0	0		ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3169555664062	2	545.319117	1088.62368	-0.23737	-0.00012944	-4.3462	-0.00237	-4.5835	-0.0024995	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	1.0719	1	11099	11099		36.447	5.9431	1	3529900			19610	7316	13765	13791	22016	22016					0.08291405196519008
GKTKARRAAM	10	Unmodified	_GKTKARRAAM_					0	0	0		ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3169555664062	2	545.319117	1088.62368	-0.46982	-0.0002562	-4.0963	-0.0022338	-4.5661	-0.00249	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0122	1	11339	11339		44.377	1.5129	1	12792000			19611	7316	13765	13791	22017	22017					0.08291405196519008
GKTKARRAAM	10	Unmodified	_GKTKARRAAM_					0	0	0		ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.319117	1088.62368	-0.35128	-0.00019156	-4.1705	-0.0022743	-4.5218	-0.0024658	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.0236	3	10743	10503;10683;10743		42.864	4.0581	1	4936700			19612	7316	13765	13791	22018;22019;22020	22020					0.08291405196519008
GKTKARRAAM	10	Unmodified	_GKTKARRAAM_					0	0	0		ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3170166015625	2	545.319117	1088.62368	-0.47781	-0.00026056	-3.9651	-0.0021623	-4.4429	-0.0024228	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0719	1	10793	10793		36.447	2.2742	1	17400000			19613	7316	13765	13791	22021	22021					0.08291405196519008
GKTKMKRR	8	Unmodified	_GKTKMKRR_					0	0	0		ENST00000478153.1_1_2:217363923-217364755:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000494116.1_1_11:111759925-111760129:-|nuORF;nc|ENSG00000176343|A6NKH3|RPL37AP8	ENST00000478153.1_1_2:217363923-217364755:+|nuORF;ENST00000494116.1_1_11:111759925-111760129:-|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.8141174316406	2	502.810928	1003.6073	0.95577	0.00048057	4.2869	0.0021555	5.2427	0.0026361	502.8131940383032	96.131	1.8999	96.133	95.739	97.639	0.0020676					149	43	5	0	0	0	1.0574	1	12149	12149		21.96	0.25755	1	20046000			19614	15131;15520	13766	13792	22022	22022					0.10564324030440275
GKTLPRGH	8	Unmodified	_GKTLPRGH_					0	0	0			REV__ENSG00000130309|ENST00000252599|COLGALT1	REV__ENSG00000130309|ENST00000252599|COLGALT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.25537109375	2	433.253769	864.492984	0.068768	2.9794E-05	2.9354	0.0012718	3.0042	0.0013016	433.25539260258705	102.94	2.6221	102.81	102.45	105.08	-0.12783					130	72	2	0	0	0	0.91239	1	12888	12888		50.025	3.2581	1	236480000	+		19615	23104	13767	13793	22023	22023					0.05531757539984028
GKTSKKIAI	9	Unmodified	_GKTSKKIAI_					0	0	0		ENST00000424692.3_1_4:124983938-124984139:+|nuORF	ENST00000424692.3_1_4:124983938-124984139:+|nuORF	ENST00000424692.3_1_4:124983938-124984139:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.30816650390625	2	473.30821	944.601866	1.0992	0.00052025	-0.58489	-0.00027683	0.51428	0.00024342	473.30784502814635	18.275	0.49213	18.119	17.953	18.445	-0.15637					22	9	3	0	0	0	0.96322	1	289	289		27.882	4.8398	1	78155			19616	14049	13768	13794	22024	22024					0.1273492371959719
GKVARSHIL	9	Unmodified	_GKVARSHIL_					0	0	0		nc|ENSG00000198520|Q6PIY5-2|ARMH1;ENST00000357508.5_1_1:45155363-45190065:+|nuORF;ENSG00000198520|ENST00000535358|ARMH1;ENST00000444751.5_1_1:45140474-45166606:+|nuORF;ENST00000424484.5_1_1:45155363-45158665:+|nuORF	nc|ENSG00000198520|Q6PIY5-2|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.80352783203125	2	490.803626	979.592698	-0.69619	-0.00034169	0.21433	0.00010519	-0.48186	-0.0002365	490.8037124440314	35.574	0.96212	35.574	35.2	36.162	0					102	25	5	0	0	0	0.80658	1	2774	2774		38.806	10.552	1	4851900			19617	10142	13769	13795	22025	22025					0.10208575153933452
GKVEDDRGYCG	11	Unmodified	_GKVEDDRGYCG_					0	0	0		ENST00000532125.1_1_11:126139116-126141350:+|nuORF;ENST00000526525.1_1_11:126139101-126142891:+|nuORF	ENST00000532125.1_1_11:126139116-126141350:+|nuORF	ENST00000532125.1_1_11:126139116-126141350:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.176755	1197.50844	0.23881	9.5568E-05	-1.5467	-0.00061897	-1.3079	-0.0005234	400.1769274709479	22.038	0.33586	21.963	21.841	22.177	-0.075296					10	6	2	0	0	0	0.024735	1	739	739		34.087	2.4522	1	23452			19618	16125	13770	13796	22026	22026					-0.0824178851578381
GKVFHPGIS	9	Unmodified	_GKVFHPGIS_					0	0	0		ENST00000490775.5_1_X:148580774-148584869:-|nuORF;nc|ENSG00000241489|P22304-3|IDS;nc|ENSG00000241489|P22304-2|IDS;ENSG00000010404|ENST00000340855|IDS	ENST00000490775.5_1_X:148580774-148584869:-|nuORF	ENST00000490775.5_1_X:148580774-148584869:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.79473876953125	2	471.263802	940.513051	0.71068	0.00033492	3.2003	0.0015082	3.911	0.0018431	471.2651693813132	19.088	0.49428	18.885	18.708	19.202	-0.20371					16	9	3	0	0	0	0.024427	1	412	412		34.173	0	1	156430			19619	15439	13771	13797	22027	22027					0.04041508479940603
GKVIKSKY	8	Unmodified	_GKVIKSKY_					0	0	0			REV__ENSG00000196284|ENST00000371459|SUPT3H	REV__ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.21978759765625	2	461.789653	921.564752	-0.24529	-0.00011327	0.89226	0.00041204	0.64697	0.00029876	461.789767688548	60.122	0.77909	59.922	59.691	60.47	-0.20016					39	20	3	0	0	0	0.027866	1	6919	6919		50.025	21.77	1	1094100	+		19620	28158	13772	13798	22028	22028					0.10083252173842538
GKVKDIVIN	9	Unmodified	_GKVKDIVIN_					0	0	0		ENSG00000100564|ENST00000216452|PIGH;ENST00000558833.1_1_15:59969298-59969517:+|nuORF	ENSG00000100564|ENST00000216452|PIGH	ENSG00000100564|ENST00000216452|PIGH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3072814941406	2	493.305667	984.596781	0.20997	0.00010358	3.1263	0.0015422	3.3363	0.0016458	493.30713692760764	101.07	1.5462	101.07	100.43	101.97	-0.0054474					102	36	5	0	0	0	0.74711	1	12901	12901		42.864	2.0861	1	7564200			19621	2216	13773	13799	22029	22029					0.10386619856990364
GKVKQRAR	8	Unmodified	_GKVKQRAR_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7900390625	2	471.801417	941.588282	0.063319	2.9874E-05	0.51286	0.00024197	0.57618	0.00027184	471.80213353867146	47.954	0.16253	47.954	47.875	48.037	0					6	4	2	0	0	0	0.027866	1	4863	4863		17.365	0	1	417490	+		19622	19162	13774	13800	22030	22030					0.11515110731033928
GKVLRNEP	8	Unmodified	_GKVLRNEP_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.76611328125	2	456.766709	911.518865	-0.50833	-0.00023219	-0.16316	-7.4525E-05	-0.67149	-0.00030671	456.7666365179349	43.746	1.5356	43.746	42.679	44.215	0					98	42	5	0	0	0	0.71833	2	4159	4159;4175		65.803	15.391	1	18481000	+		19623	20825	13775	13801	22031;22032	22031					0.05956606991594526
GKVLRNEP	8	Unmodified	_GKVLRNEP_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7666015625	2	456.766709	911.518865	-0.7776	-0.00035518	0.14722	6.7247E-05	-0.63038	-0.00028793	456.7667752746705	43.87	2.1021	43.725	42.768	44.87	-0.14471					106	59	4	0	0	0	0.845	1	4167	4167		55.504	7.5886	1	18488000	+		19624	20825	13775	13801	22033	22033					0.05956606991594526
GKVLRNEP	8	Unmodified	_GKVLRNEP_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.76678466796875	2	456.766709	911.518865	0.17052	7.7886E-05	-0.70161	-0.00032047	-0.5311	-0.00024259	456.7664024861867	43.764	1.9423	43.795	42.974	44.917	0.030827					106	54	5	0	0	0	0.71833	1	4104	4104		65.803	7.9919	1	18525000	+		19625	20825	13775	13801	22034	22034					0.05956606991594526
GKVLSHKQGL	10	Unmodified	_GKVLSHKQGL_					0	0	0		ENSG00000136866|ENST00000374227|ZFP37;nc|ENSG00000136866|Q9Y6Q3-3|ZFP37;nc|ENSG00000136866|Q9Y6Q3-2|ZFP37	ENSG00000136866|ENST00000374227|ZFP37	ENSG00000136866|ENST00000374227|ZFP37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8052978515625	2	533.822015	1065.62948	-0.6157	-0.00032867	3.7954	0.0020261	3.1797	0.0016974	533.824587085051	44.904	0.3892	44.948	44.79	45.18	0.043877					15	10	2	0	0	0	0.03519	1	4270	4270		54.776	0	1	454000			19626	5057	13776	13802	22035	22035					0.09928826979853511
GKVLSIVSV	9	Unmodified	_GKVLSIVSV_					0	0	0			REV__ENST00000573596.1_1_17:7081373-7081448:-|nuORF	REV__ENST00000573596.1_1_17:7081373-7081448:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.760498046875	2	451.289485	900.564418	-0.61063	-0.00027557	2.3686	0.0010689	1.758	0.00079335	451.29090449484784	39.032	0.38388	38.809	38.652	39.035	-0.22311					19	10	3	0	0	0	0.024457	1	3273	3273		29.15	7.4472	1	385460	+		19627	35438	13777	13803	22036	22036					0.11015832453995245
GKVRMIVCVN	10	Unmodified	_GKVRMIVCVN_					0	0	0		nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;chr15:69446091-69446286|506|11.59|0.5|4.54|+|ENST00000395392|KIF23,KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23	nc|ENSG00000137807|Q02241-3|KIF23	nc|ENSG00000137807|Q02241-3|KIF23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2610473632812	2	559.812279	1117.61	-0.88892	-0.00049763	-2.8459	-0.0015932	-3.7348	-0.0020908	560.312030979774	43.379	0.83672	43.379	43.15	43.987	0					64	22	4	0	0	0	0.03519	1	4083	4083		14.137	0	1	304130			19628	348	13778	13804	22037	22037					0.05590411373077586
GKVTSLLIW	9	Unmodified	_GKVTSLLIW_					0	0	0		ENSG00000172215|ENST00000304552|CXCR6	ENSG00000172215|ENST00000304552|CXCR6	ENSG00000172215|ENST00000304552|CXCR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.7660217285156	2	508.810585	1015.60662	-0.8594	-0.00043727	-0.42828	-0.00021791	-1.2877	-0.00065518	508.81037514864664	66.068	0.57485	65.855	65.421	65.996	-0.21327					15	13	2	0	0	0	0.024466	1	7579	7579		31.53	0	1	160660			19629	8256	13779	13805	22038	22038					0.09943807862362064
GKVVKGGLPVL	11	Unmodified	_GKVVKGGLPVL_					0	0	0		nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8052978515625	2	533.852784	1065.69102	-1.1644	-0.00062164	-4.4338	-0.002367	-5.5982	-0.0029886	533.8518625893461	44.844	0.13745	44.844	44.725	44.862	0					5	3	2	0	0	0	0.024793	1	4309	4309		47.657	6.8792	1	40170			19630	18398	13780	13806	22039	22039					0.1607975867912046
GKVVKGGLPVL	11	Unmodified	_GKVVKGGLPVL_					0	0	0		nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	nc|ENSG00000155090|Q13118-4|KLF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8051147460938	2	533.852784	1065.69102	-1.1502	-0.00061402	4.3349	0.0023142	3.1847	0.0017002	533.8551741951329	45.14	0.31831	44.991	44.796	45.115	-0.1488					11	8	2	0	0	0	0.024776	1	4315	4315		49.442	7.0454	1	94941			19631	18398	13780	13806	22040	22040					0.1607975867912046
GKVWLTVLF	9	Unmodified	_GKVWLTVLF_					0	0	0		ENSG00000121743|ENST00000241125|GJA3;ENSG00000265107|ENST00000579774|GJA5	ENSG00000121743|ENST00000241125|GJA3	ENSG00000121743|ENST00000241125|GJA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8005981445312	2	531.820953	1061.62735	-0.86909	-0.0004622	0.25115	0.00013357	-0.61795	-0.00032864	531.8211771189137	56.856	0.15871	56.856	56.809	56.968	0					5	4	2	0	0	0	0.024487	1	6367	6367		31.955	0	1	140360			19632	3884	13781	13807	22041	22041					0.09900398242007213
GKWHEIIAI	9	Unmodified	_GKWHEIIAI_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8038940429688	2	533.805834	1065.59712	-1.1538	-0.00061591	0.22134	0.00011815	-0.93247	-0.00049776	533.8060234938253	45.067	1.1268	44.919	44.523	45.649	-0.1488					123	32	5	0	0	0	0.53979	1	4391	4391		56.721	3.3696	1	51243000			19633	1082;38131	13782	13808	22042	22042					0.06694039576836985
GKWKMLHY	8	Unmodified	_GKWKMLHY_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2673950195312	2	531.781305	1061.54806	0.094174	5.008E-05	3.4265	0.0018222	3.5207	0.0018723	531.7838804632537	23.203	0.45732	23.001	22.78	23.237	-0.20193					18	9	3	0	0	0	0.027866	1	884	884		33.516	16.048	1	91887			19634	2972	13783	13809	22043	22043					0.01974428016251295
GKWTRGTVL	9	Unmodified	_GKWTRGTVL_					0	0	0			REV__ENST00000512621.5_1_4:99993722-100006301:-|nuORF	REV__ENST00000512621.5_1_4:99993722-100006301:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.298583984375	2	509.295633	1016.57671	-0.60019	-0.00030567	-0.20828	-0.00010607	-0.80847	-0.00041175	509.29542856232626	26.98	0.60072	26.823	26.544	27.145	-0.15664					34	13	4	0	0	0	0.024539	1	1416	1416		27.882	0	1	551580	+		19635	28360	13784	13810	22044	22044					0.06908868917037125
GKYPGKNG	8	Unmodified	_GKYPGKNG_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.71875	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	1.0574	1	12129	12129		25.45	2.4077	1	3611200			19636	4590	13785	13811	22045	22045					0.00696673520440072
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.2530212402344	2	414.252903	826.491253	0.97441	0.00040365	-1.008	-0.00041758	-0.033618	-1.3926E-05	414.2524535134996	67.585	1.2348	67.585	67.285	68.52	0					77	31	3	0	0	0	0.0070862	3	8076	8063;8076;8090		174.26	69.319	1	4193700			19637	9533	13786	13812	22046;22047;22048	22047					0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.2532043457031	2	414.252903	826.491253	0.5007	0.00020742	-0.37684	-0.00015611	0.12386	5.1309E-05	414.25271888815075	67.905	1.1024	67.616	67.307	68.409	-0.28835					65	27	3	0	0	0	0.031052	4	8078	8078;8090;8102;8115		154.34	74.399	1	3704100			19638	9533	13786	13812	22049;22050;22051;22052	22049					0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.25323486328125	2	414.252903	826.491253	0.32515	0.0001347	-0.2664	-0.00011036	0.058752	2.4338E-05	414.252769964701	67.645	1.1661	67.669	67.23	68.396	0.023911					78	29	5	0	0	0	0.031052	4	7986	7986;7999;8012;8024		154.34	63.562	1	4586500			19639	9533	13786	13812	22053;22054;22055;22056	22053					0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.2530212402344	2	414.252903	826.491253	0.85856	0.00035566	-0.33274	-0.00013784	0.52582	0.00021782	414.25268210636864	67.945	0.82071	67.69	67.367	68.188	-0.25516					36	19	2	0	0	0	0.031052	3	7823	7823;7834;7845		154.34	63.4	1	2558100			19640	9533	13786	13812	22057;22058;22059	22057					0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.25335693359375	2	414.252903	826.491253	0.093331	3.8663E-05	0.47522	0.00019686	0.56855	0.00023552	414.25300164167186	67.89	0.97179	67.657	67.303	68.275	-0.23376					41	23	2	0	0	0	0.0070862	3	7847	7825;7835;7847		174.26	69.319	1	3080300			19641	9533	13786	13812	22060;22061;22062	22062					0.07106703731369635
GLAAGGIVAV	10	Unmodified	_GLAAGGIVAV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.253173828125	2	414.252903	826.491253	0.28896	0.0001197	0.15642	6.4799E-05	0.44539	0.0001845	414.25287510182534	67.889	0.89811	67.651	67.289	68.187	-0.23814					39	21	2	0	0	0	0.031052	3	7816	7804;7816;7830		154.34	63.4	1	3162600			19642	9533	13786	13812	22063;22064;22065	22064					0.07106703731369635
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;LIMK2-ATXN10|2|fusion;LIMK2-ATXN10|1|fusion	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.84423828125	2	557.845156	1113.67576	-0.37455	-0.00020894	0.011546	6.441E-06	-0.363	-0.0002025	557.8449291184573	54.303	0.8592	54.303	54.01	54.869	0					66	24	4	0	0	0	0.064447	1	5919	5919		117.53	13.469	1	6030200			19643	4434	13787	13813	22066	22066					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;LIMK2-ATXN10|2|fusion;LIMK2-ATXN10|1|fusion	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.8446655273438	2	557.845156	1113.67576	-0.23443	-0.00013078	-0.046967	-2.62E-05	-0.2814	-0.00015698	557.8448939271652	54.401	0.69009	54.251	53.951	54.641	-0.15036					58	19	4	0	0	0	0.0098899	1	5909	5909		140.11	7.3544	1	5724000			19644	4434	13787	13813	22067	22067					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;LIMK2-ATXN10|2|fusion;LIMK2-ATXN10|1|fusion	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.8438110351562	2	557.845156	1113.67576	0.65068	0.00036298	-0.94166	-0.0005253	-0.29098	-0.00016232	557.8443818256034	54.107	0.85284	54.205	53.739	54.591	0.098015					61	24	5	0	0	0	0.012363	2	5810	5810;5840		136.99	29.898	1	4992900			19645	4434	13787	13813	22068;22069	22068					0.12346847091271229
GLADITQQL	9	Unmodified	_GLADITQQL_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.763671875	2	479.763832	957.513111	-0.011263	-5.4035E-06	0.17071	8.19E-05	0.15945	7.6496E-05	479.76376828965243	73.038	0.73714	73.038	72.74	73.477	0					55	18	4	0	0	0	0.014034	3	8888	8888;8900;8915		195.81	52.795	1	3548000			19646	7665	13788	13814	22070;22071;22072	22070					0.032654636892857525
GLADITQQL	9	Unmodified	_GLADITQQL_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7636413574219	2	479.763832	957.513111	0.080851	3.8789E-05	0.015503	7.4378E-06	0.096354	4.6227E-05	479.76370239043445	73.419	0.73705	73.148	72.801	73.538	-0.27126					49	18	4	0	0	0	0.014034	4	8903	8903;8913;8927;8939		211.39	43.565	1	4234200			19647	7665	13788	13814	22073;22074;22075;22076	22073					0.032654636892857525
GLADITQQL	9	Unmodified	_GLADITQQL_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.76348876953125	2	479.763832	957.513111	-0.075387	-3.6168E-05	0.31691	0.00015204	0.24153	0.00011588	479.76376338689533	73.078	0.82208	73.087	72.735	73.558	0.0096512					58	20	4	0	0	0	0.013887	3	8829	8816;8829;8843		195.81	71.22	1	3889800			19648	7665	13788	13814	22077;22078;22079	22078					0.032654636892857525
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.286865234375	2	513.286943	1024.55933	0.18643	9.5691E-05	-0.38728	-0.00019879	-0.20086	-0.0001031	513.286562033924	72.012	2.0623	72.012	71.415	73.477	0					175	52	7	0	0	0	0.10174	3	8732	8720;8732;8756		110.12	41.333	1	46885000			19649	1781	13789	13815	22080;22081;22082	22081					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2870483398438	2	513.286943	1024.55933	0.5557	0.00028523	-0.85792	-0.00044036	-0.30222	-0.00015513	513.2862937747873	72.306	2.0561	72.025	71.472	73.528	-0.28124					184	52	7	0	0	0	0.067814	3	8743	8732;8743;8755		122.18	37.241	1	44145000			19650	1781	13789	13815	22083;22084;22085	22084					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.2871704101562	2	513.286943	1024.55933	0.162	8.3151E-05	-0.48944	-0.00025122	-0.32744	-0.00016807	513.2864751464665	72.016	1.9319	72.026	71.508	73.44	0.0097733					180	49	6	0	0	0	0.067814	4	8666	8651;8666;8678;8690		122.18	42.725	1	49013000			19651	1781	13789	13815	22086;22087;22088;22089	22087					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.2870483398438	2	513.286943	1024.55933	-0.0070695	-3.6287E-06	-0.44396	-0.00022788	-0.45103	-0.00023151	513.286691873332	72.285	1.5801	72.008	71.471	73.051	-0.2769					83	37	3	0	0	0	0.067814	6	8439	8439;8450;8462;8474;8486;8500		122.18	39.935	1	14083000			19652	1781	13789	13815	22090;22091;22092;22093;22094;22095	22090					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.287109375	2	513.286943	1024.55933	0.31404	0.00016119	-0.82387	-0.00042288	-0.50983	-0.00026169	513.2865042126898	72.286	1.5015	72.021	71.556	73.058	-0.26479					84	35	3	0	0	0	0.03849	6	8460	8450;8460;8471;8483;8495;8517		134.81	44.034	1	13586000			19653	1781	13789	13815	22096;22097;22098;22099;22100;22101	22097					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2869262695312	2	513.286943	1024.55933	-0.23222	-0.00011919	-0.22441	-0.00011519	-0.45663	-0.00023438	513.2868269867822	72.114	1.4541	71.913	71.582	73.036	-0.2007					77	34	3	0	0	0	0.067814	5	8433	8413;8422;8433;8463;8478		122.18	42.725	1	13535000			19654	1781	13789	13815	22102;22103;22104;22105;22106	22104					0.04803528591378381
GLADLSELQL	10	Unmodified	_GLADLSELQL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7822875976562	2	529.790047	1057.56554	0.27521	0.00014581	0.43791	0.000232	0.71313	0.00037781	529.790223290666	88.971	0.50455	88.987	88.753	89.257	0.015907					21	11	2	0	0	0	0.34101	1	11156	11156		104.75	8.5561	1	626100			19655	2521	13790	13816	22107	22107					0.03906002032226752
GLADRNGARLR	11	Unmodified	_GLADRNGARLR_					0	0	0		ENST00000333896.5_1_2:54785617-54785935:+|nuORF	ENST00000333896.5_1_2:54785617-54785935:+|nuORF	ENST00000333896.5_1_2:54785617-54785935:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.2304382324219	3	400.230294	1197.66905	0.83763	0.00033525	-1.2659	-0.00050667	-0.42831	-0.00017142	400.22992138935825	22.077	1.5417	22.077	21.537	23.079	0					111	32	5	0	0	0	0.86757	1	731	731		53.597	1.4297	1	7007000			19656	12373	13791	13817	22108	22108					0.0781234698326898
GLADRNGARLR	11	Unmodified	_GLADRNGARLR_					0	0	0		ENST00000333896.5_1_2:54785617-54785935:+|nuORF	ENST00000333896.5_1_2:54785617-54785935:+|nuORF	ENST00000333896.5_1_2:54785617-54785935:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.23046875	3	400.230294	1197.66905	0.24092	9.6422E-05	-0.58922	-0.00023582	-0.3483	-0.0001394	400.230197241662	22.087	1.5775	22.011	21.56	23.137	-0.075296					119	33	6	0	0	0	0.78452	1	752	752		58.63	5.0327	1	6459900			19657	12373	13791	13817	22109	22109					0.0781234698326898
GLADRNGARLR	11	Unmodified	_GLADRNGARLR_					0	0	0		ENST00000333896.5_1_2:54785617-54785935:+|nuORF	ENST00000333896.5_1_2:54785617-54785935:+|nuORF	ENST00000333896.5_1_2:54785617-54785935:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.2304382324219	3	400.230294	1197.66905	1.79	0.00071642	-2.0279	-0.00081165	-0.23792	-9.5222E-05	400.2295883128697	21.979	1.5639	22.051	21.546	23.11	0.071487					115	32	6	0	0	0	0.73278	1	688	688		61.765	18.114	1	6027300			19658	12373	13791	13817	22110	22110					0.0781234698326898
GLAEHLYLA	9	Unmodified	_GLAEHLYLA_					0	0	0		ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	ENST00000487209.5_1_1:43830638-43833598:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7902526855469	2	493.768917	985.523281	0.88377	0.00043638	0.26875	0.0001327	1.1525	0.00056908	493.7689065340249	59.9	1.5109	59.9	59.559	61.07	0					65	40	2	0	0	0	0.024323	1	6880	6880		44.117	0	1	2722500			19659	15177	13792	13818	22111	22111					0.0299407141451411
GLAEILVLV	9	Unmodified	_GLAEILVLV_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7997741699219	2	463.799686	925.584819	0.0090014	4.1748E-06	0.37467	0.00017377	0.38367	0.00017795	463.7997091602389	103.02	1.1333	103.03	102.74	103.88	0.0054245					61	28	3	0	0	0	0.70186	1	13176	13176		45.952	3.4775	1	753020			19660	6940	13793	13819	22112	22112					0.119050031137931
GLAELYVMV	9	Oxidation (M)	_GLAELYVM(Oxidation (M))V_		GLAELYVM(1)V		GLAELYVM(100)V	0	0	1		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7651672363281	2	505.764986	1009.51542	-0.57321	-0.00028991	0.59475	0.00030081	0.021541	1.0895E-05	505.7651267828769	80.099	0.99823	80.099	79.786	80.784	0					71	23	4	0	0	0	0.14199	4	9945	9935;9945;9957;9969		101.21	21.272	1	4604500			19661	10817	13794	13820	22113;22114;22115;22116	22114		455			0.011041761027399843
GLAELYVMV	9	Oxidation (M)	_GLAELYVM(Oxidation (M))V_		GLAELYVM(1)V		GLAELYVM(100)V	0	0	1		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.7650451660156	2	505.764986	1009.51542	-1.1292	-0.00057112	1.17	0.00059173	0.04076	2.0615E-05	505.76538553998154	80.288	0.92255	80.136	79.758	80.68	-0.15169					65	21	4	0	0	0	0.14199	4	9933	9923;9933;9945;9958		101.21	21.272	1	3851600			19662	10817	13794	13820	22117;22118;22119;22120	22118		455			0.011041761027399843
GLAELYVMV	9	Oxidation (M)	_GLAELYVM(Oxidation (M))V_		GLAELYVM(1)V		GLAELYVM(120)V	0	0	1		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.76513671875	2	505.764986	1009.51542	-0.55987	-0.00028316	0.65276	0.00033014	0.092892	4.6982E-05	505.7651348962669	80.116	0.88266	80.138	79.771	80.654	0.021439					67	20	4	0	0	0	0.075871	2	9880	9869;9880		119.22	23.173	1	4493200			19663	10817	13794	13820	22121;22122	22122		455			0.011041761027399843
GLAELYVMV	9	Oxidation (M)	_GLAELYVM(Oxidation (M))V_					0	0	1		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.764986	1009.51542	0.27316	0.00013816	-0.59728	-0.00030208	-0.32412	-0.00016393	505.7646514069259	80.424	0.78755	80.186	79.662	80.45	-0.23784	0.083191	-0.0011351	NaN	119.22	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271890			19664	10817	13794	13820				455			0.011041761027399843
GLAELYVMV	9	Oxidation (M)	_GLAELYVM(Oxidation (M))V_					0	0	1		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.764986	1009.51542	0.15019	7.596E-05	-0.23502	-0.00011887	-0.084833	-4.2905E-05	505.7647423274831	80.222	0.75307	80.015	79.714	80.467	-0.20633	-0.087144	-0.00076864	NaN	119.22	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364300			19665	10817	13794	13820				455			0.011041761027399843
GLAELYVMV	9	Oxidation (M)	_GLAELYVM(Oxidation (M))V_					0	0	1		ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.764986	1009.51542	-0.17143	-8.6705E-05	-0.28602	-0.00014466	-0.45745	-0.00023136	505.764966025603	80.187	0.791	80.041	79.701	80.492	-0.146	-0.061119	-0.00082022	NaN	119.22	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353790			19666	10817	13794	13820				455			0.011041761027399843
GLAEREKKL	9	Unmodified	_GLAEREKKL_					0	0	0			REV__ENSG00000117133|ENST00000370654|RPF1	REV__ENSG00000117133|ENST00000370654|RPF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7993774414062	2	522.314023	1042.61349	-0.35789	-0.00018693	-0.31581	-0.00016495	-0.67371	-0.00035189	522.313881035165	19.626	0.33848	19.508	19.348	19.686	-0.11872					11	6	2	0	0	0	0.0245	1	422	422		36.447	13.404	1	99876	+		19667	22326	13795	13821	22123	22123					0.0938912074293512
GLAESVSTL	9	Unmodified	_GLAESVSTL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.7373046875	2	438.737283	875.460012	-0.010112	-4.4366E-06	0.24561	0.00010776	0.23549	0.00010332	438.73724346715943	61.635	0.75407	61.635	61.255	62.009	0					51	19	4	0	0	0	0.028181	1	7145	7145		143.02	40.246	1	1794500			19668	9103	13796	13822	22124	22124					0.01730085906626755
GLAESVSTL	9	Unmodified	_GLAESVSTL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.7370910644531	2	438.737283	875.460012	0.39341	0.0001726	-0.10076	-4.4208E-05	0.29264	0.00012839	438.7370530658197	61.881	0.82459	61.654	61.225	62.049	-0.22663					47	21	4	0	0	0	0.17455	1	7154	7154		94.006	17.16	1	1948200			19669	9103	13796	13822	22125	22125					0.01730085906626755
GLAESVSTL	9	Unmodified	_GLAESVSTL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.7386474609375	2	438.737283	875.460012	0.15734	6.9032E-05	0.062523	2.7431E-05	0.21986	9.6463E-05	438.7371478644558	61.55	0.89451	61.622	61.131	62.026	0.071125					53	23	4	0	0	0	0.13494	1	7037	7037		102.77	5.3007	1	2162400			19670	9103	13796	13822	22126	22126					0.01730085906626755
GLAETVLVV	9	Unmodified	_GLAETVLVV_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7734069824219	2	450.773668	899.532783	0.04006	1.8058E-05	-0.1132	-5.1027E-05	-0.073138	-3.2969E-05	450.77362882433204	79.07	0.91729	79.07	78.741	79.658	0					39	21	3	0	0	0	0.31247	1	9804	9804		73.975	8.1716	1	597680			19671	4530	13797	13823	22127	22127					0.07899839700041866
GLAETVLVV	9	Unmodified	_GLAETVLVV_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.77313232421875	2	450.773668	899.532783	-0.38042	-0.00017148	0.76608	0.00034533	0.38567	0.00017385	450.77382181120635	79.211	0.87502	79.039	78.777	79.652	-0.17226					47	20	4	0	0	0	0.29104	1	9786	9786		76.847	11.043	1	531200			19672	4530	13797	13823	22128	22128					0.07899839700041866
GLAFIELI	8	Unmodified	_GLAFIELI_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.24700927734375	2	438.265479	874.516405	0.014308	6.2706E-06	-3.2312	-0.0014161	-3.2169	-0.0014099	438.2638382552958	26.456	0.69932	26.456	26.083	26.783	0					32	16	3	0	0	0	0.027866	1	1397	1397		20.482	0	1	148920			19673	8321	13798	13824	22129	22129					0.07412758533939723
GLAFIELI	8	Unmodified	_GLAFIELI_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2471618652344	2	438.265479	874.516405	-0.27327	-0.00011977	-3.2545	-0.0014264	-3.5278	-0.0015461	438.26395082883477	26.483	0.94978	26.46	25.909	26.859	-0.023088					44	22	3	0	0	0	0.027866	1	1381	1381		21.702	0	1	164120			19674	8321	13798	13824	22130	22130					0.07412758533939723
GLAGAGPIWA	10	Unmodified	_GLAGAGPIWA_					0	0	0		ENST00000455575.1_1_7:86849611-86849701:-|nuORF	ENST00000455575.1_1_7:86849611-86849701:-|nuORF	ENST00000455575.1_1_7:86849611-86849701:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7713623046875	2	456.750527	911.486502	-0.25127	-0.00011477	1.5034	0.00068666	1.2521	0.00057189	456.7521871168781	73.271	0.21737	73.271	73.109	73.327	0					6	5	2	0	0	0	0.03519	1	8931	8931		19.36	0	1	69507			19675	14584	13799	13825	22131	22131					0.02721819588600738
GLAGELAFVAA	11	Unmodified	_GLAGELAFVAA_					0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.23541259765625	2	509.782025	1017.5495	-0.41695	-0.00021255	-2.6523	-0.0013521	-3.0693	-0.0015647	509.7810437076244	31.05	0.46836	31.062	30.831	31.299	0.011797					22	10	3	0	0	0	0.024766	1	2059	2059		44.117	10.601	1	244630	+		19676	23564	13800	13826	22132	22132					0.04142340585997317
GLAGGGVG	8	Unmodified	_GLAGGGVG_					0	0	0			REV__ENST00000379672.9_2_17:12692889-12693084:+|nuORF	REV__ENST00000379672.9_2_17:12692889-12693084:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.2947998046875	1	587.314751	586.307475	-0.23002	-0.00013509	0.23349	0.00013713	0.0034713	2.0388E-06	587.3131131942572	78.109	0.17172	77.867	77.78	77.952	-0.24232					5	3	2	0	0	0	0.027866	1	9319	9319		10.185	0	1	15623	+		19677	31442	13801	13827	22133	22133					-0.00222644979476172
GLAGGPQAPCL	11	Unmodified	_GLAGGPQAPCL_					0	0	0		ENST00000542400.5_1_12:125431729-125432026:-|nuORF	ENST00000542400.5_1_12:125431729-125432026:-|nuORF	ENST00000542400.5_1_12:125431729-125432026:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.27886962890625	2	492.252577	982.490601	0.50439	0.00024829	-1.22	-0.00060055	-0.71562	-0.00035226	492.25140534212966	59.391	0.40763	59.143	59.01	59.417	-0.24842					14	9	3	0	0	0	0.024743	1	6578	6578		27.882	10.517	1	51332			19678	16452	13802	13828	22134	22134					-0.0013445898000554735
GLAGGVALFL	10	Unmodified	_GLAGGVALFL_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.77655029296875	2	459.276378	916.538203	0.29363	0.00013486	3.1148	0.0014305	3.4084	0.0015654	459.2777627408133	46.547	0.49734	46.599	46.375	46.873	0.051395					16	13	2	0	0	0	0.03519	1	4556	4556		44.531	5.7249	1	1014000	+		19679	23162	13803	13829	22135	22135					0.07659563282493309
GLAGGVEQFI	10	Unmodified	_GLAGGVEQFI_					0	0	0		ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.7662048339844	2	495.766374	989.518196	0.13142	6.5153E-05	-0.44312	-0.00021969	-0.3117	-0.00015453	495.7660814189112	78.772	0.67123	78.772	78.489	79.16	0					36	15	3	0	0	0	0.34816	1	9762	9762		104.01	13.237	1	720540			19680	871	13804	13830	22136	22136					0.023017675519099612
GLAGGVEQFI	10	Unmodified	_GLAGGVEQFI_					0	0	0		ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.766374	989.518196	-0.065222	-3.2335E-05	-0.24251	-0.00012023	-0.30774	-0.00015256	495.76619105392257	78.893	0.71012	78.701	78.339	79.049	-0.1921	-0.051281	-2.808E-05	NaN	104.01	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	756310			19681	871	13804	13830							0.023017675519099612
GLAGGVEQFI	10	Unmodified	_GLAGGVEQFI_					0	0	0		ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.766374	989.518196	-0.043675	-2.1653E-05	0.006836	3.3891E-06	-0.036839	-1.8263E-05	495.76618012160606	78.765	0.5453	78.784	78.524	79.07	0.018677	0.031496	0.00021916	NaN	104.01	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	714800			19682	871	13804	13830							0.023017675519099612
GLAGLREPI	9	Unmodified	_GLAGLREPI_					0	0	0			REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2328796386719	2	463.276909	924.539266	0.24829	0.00011503	-2.0116	-0.00093195	-1.7634	-0.00081692	463.27580010721783	53.664	0.34881	53.76	53.556	53.905	0.095669					14	9	2	0	0	0	0.024	1	5736	5736		55.504	0	1	153630	+		19683	35903	13805	13831	22137	22137					0.07397777651419801
GLAGVLVKIV	10	Unmodified	_GLAGVLVKIV_					0	0	0			REV__ENSG00000187808|ENST00000343905|SOWAHD	REV__ENSG00000187808|ENST00000343905|SOWAHD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.8164367675781	2	484.828778	967.643003	-0.18571	-9.0038E-05	1.961	0.00095074	1.7753	0.0008607	484.8294378649049	66.554	0.1852	66.309	66.166	66.351	-0.24517					5	4	2	0	0	0	0.03519	1	7613	7613		38.806	0	1	184980	+		19684	27979	13806	13832	22138	22138					0.157886847591044
GLAHLFCSTT	10	Unmodified	_GLAHLFCSTT_					0	0	0		ZMYM5|p.S263L|1|0.39|ENSG00000132950|chr13:19838784-19838784|G/A|missense_variant	ZMYM5|p.S263L|1|0.39|ENSG00000132950|chr13:19838784-19838784|G/A|missense_variant	ZMYM5|p.S263L|1|0.39|ENSG00000132950|chr13:19838784-19838784|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3025512695312	2	525.257859	1048.50117	0.40081	0.00021053	-1.1646	-0.00061173	-0.76381	-0.0004012	525.2571473912063	63.772	0.51366	63.514	63.239	63.752	-0.25824					24	13	2	0	0	0	0.03519	1	7207	7207		23.042	0	1	452610			19685	38178	13807	13833	22139	22139					-0.02114476325573378
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	408.2536315917969	2	408.252903	814.491253	1.1579	0.00047271	-0.48883	-0.00019957	0.66906	0.00027314	408.2525720097278	40.845	0.77351	40.845	40.587	41.36	0					47	21	3	0	0	0	0.033448	2	3628	3628;3639		138.83	48.049	1	3024200			19686	8896	13808	13834	22140;22141	22140					0.07658703731374317
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	408.2531433105469	2	408.252903	814.491253	1.0579	0.00043189	-0.44291	-0.00018082	0.615	0.00025107	408.25257152519725	40.977	0.77724	40.854	40.584	41.361	-0.12317					51	21	4	0	0	0	0.013333	2	3628	3628;3640		176.41	60.952	1	2794700			19687	8896	13808	13834	22142;22143	22142					0.07658703731374317
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	408.25335693359375	2	408.252903	814.491253	1.0742	0.00043854	-0.53355	-0.00021782	0.54063	0.00022071	408.2525352670556	41.007	0.93949	41.03	40.73	41.67	0.023006					59	26	4	0	0	0	0.016758	2	3607	3596;3607		153.04	62.259	1	2661700			19688	8896	13808	13834	22144;22145	22145					0.07658703731374317
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	408.252903	814.491253	-0.1089	-4.4458E-05	0.65804	0.00026865	0.54914	0.00022419	408.2530305218467	40.909	0.69105	40.774	40.524	41.215	-0.13553	-0.10563	0.00044416	NaN	176.41	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1362500			19689	8896	13808	13834							0.07658703731374317
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	408.252903	814.491253	0.21646	8.837E-05	0.38503	0.00015719	0.60149	0.00024556	408.25290384722575	41.093	0.61954	40.865	40.616	41.236	-0.2278	-0.013807	0.00022124	NaN	176.41	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1300800			19690	8896	13808	13834							0.07658703731374317
GLAKAVASV	9	Unmodified	_GLAKAVASV_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	408.252903	814.491253	-0.90492	-0.00036944	1.5087	0.00061592	0.60376	0.00024649	408.2533734581247	41.138	0.73497	40.908	40.659	41.394	-0.23029	0.028763	0.0011387	NaN	176.41	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1163800			19691	8896	13808	13834							0.07658703731374317
GLAKESDEGD	10	Unmodified	_GLAKESDEGD_					0	0	0		ENSG00000171495|ENST00000399564|MROH2B;nc|ENSG00000171495|Q7Z745-2|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.72845458984375	2	510.727643	1019.44073	-0.23811	-0.00012161	1.2082	0.00061708	0.97014	0.00049548	510.72801201804344	55.098	1.1643	54.948	54.507	55.672	-0.15036					68	32	3	0	0	0	0.62431	1	6038	6038		74.255	0.28031	1	7634200			19692	8160	13809	13835	22146	22146					-0.06820915174944275
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.28173828125	2	450.28166	898.548768	-1.1458	-0.00051592	1.3991	0.00062997	0.2533	0.00011406	450.28211971242297	64.947	0.85681	64.685	64.417	65.273	-0.2626					50	22	3	0	0	0	0.091713	1	7635	7635		113.41	24.769	1	2479500			19693	7831	13810	13836	22147	22147					0.09543545936935516
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2532653808594	2	450.28166	898.548768	-0.47418	-0.00021351	0.79418	0.0003576	0.32	0.00014409	450.28181435485885	64.723	0.84306	64.769	64.486	65.329	0.045502					49	22	4	0	0	0	0.024263	1	7530	7530		60.972	5.4677	1	2496000			19694	7831	13810	13836	22148	22148					0.09543545936935516
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.28166	898.548768	-0.24908	-0.00011215	0.67342	0.00030323	0.42434	0.00019107	450.2818178581938	64.954	0.88264	64.719	64.413	65.296	-0.2345	0.0068012	-0.00022441	NaN	56.721	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806800			19695	7831	13810	13836							0.09543545936935516
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	450.28166	898.548768	-0.85988	-0.00038719	1.1997	0.0005402	0.33982	0.00015301	450.2820098051282	64.947	0.88661	64.744	64.42	65.307	-0.20254	0.031419	0.00024954	NaN	56.721	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790400			19696	7831	13810	13836							0.09543545936935516
GLAKLIADV	9	Unmodified	_GLAKLIADV_					0	0	0		ENST00000401028.2_1_1:91793937-91794252:+|nuORF;ENSG00000168496|ENST00000305885|FEN1	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	ENST00000401028.2_1_1:91793937-91794252:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.28166	898.548768	-0.53443	-0.00024064	0.82986	0.00037367	0.29543	0.00013303	450.28187627752635	64.942	0.8002	64.686	64.465	65.266	-0.25563	-0.026664	-8.3524E-05	NaN	56.721	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904530			19697	7831	13810	13836							0.09543545936935516
GLAKLINLK	9	Unmodified	_GLAKLINLK_					0	0	0			REV__nc|ENSG00000113269|Q86XS8-2|RNF130	REV__nc|ENSG00000113269|Q86XS8-2|RNF130	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2908020019531	2	485.326402	968.638252	-0.15431	-7.489E-05	0.56499	0.0002742	0.41068	0.00019931	485.32652213079115	25.2	0.36508	25.281	25.134	25.499	0.08009					15	8	3	0	0	0	0.024354	1	1115	1115		38.806	20.482	1	45138	+		19698	22054	13811	13837	22149	22149					0.15267800616311433
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENST00000498085.1_1_19:50222822-50223059:-|nuORF;ENSG00000170889|ENST00000302907|RPS9	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.2667236328125	2	467.266876	932.519199	2.8723	0.0013421	-2.5621	-0.0011972	0.31017	0.00014493	467.2655168623969	19.724	0.47942	19.79	19.587	20.067	0.066195					21	9	3	0	0	0	0.50848	1	415	415		58.782	16.307	1	316900			19699	8088	13812	13838	22150	22150					0.05024026711453189
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENST00000498085.1_1_19:50222822-50223059:-|nuORF;ENSG00000170889|ENST00000302907|RPS9	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.2666320800781	2	467.266876	932.519199	0.16418	7.6718E-05	-0.085625	-4.001E-05	0.07856	3.6708E-05	467.2667465926236	19.96	0.62579	19.792	19.423	20.049	-0.16774					26	12	3	0	0	0	0.43973	1	488	488		63.306	11.007	1	497420			19700	8088	13812	13838	22151	22151					0.05024026711453189
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENST00000498085.1_1_19:50222822-50223059:-|nuORF;ENSG00000170889|ENST00000302907|RPS9	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.2667541503906	2	467.266876	932.519199	1.1572	0.00054074	-1.1624	-0.00054314	-0.0051349	-2.3994E-06	467.2662160627766	20.025	0.77879	19.825	19.305	20.084	-0.2001					29	15	3	0	0	0	0.35646	1	492	492		68.787	29.981	1	452940			19701	8088	13812	13838	22152	22152					0.05024026711453189
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENST00000498085.1_1_19:50222822-50223059:-|nuORF;ENSG00000170889|ENST00000302907|RPS9	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENST00000498085.1_1_19:50222822-50223059:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.26678466796875	2	467.266876	932.519199	0.38103	0.00017804	0.073848	3.4507E-05	0.45488	0.00021255	467.2668462454401	20.077	0.93115	19.853	19.434	20.365	-0.22344					32	18	3	0	0	0	0.27161	1	473	473		79.451	16.145	1	360370			19702	8088	13812	13838	22153	22153					0.05024026711453189
GLALALGLW	9	Unmodified	_GLALALGLW_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.6570739746094	2	457.278921	912.543289	0.53739	0.00024574	-0.62063	-0.0002838	-0.083246	-3.8067E-05	457.2784754705652	59.662	0.72263	59.486	59.199	59.922	-0.1761					28	18	2	0	0	0	0.024289	1	6618	6618		39.021	22.548	1	224830	+		19703	22253	13813	13839	22154	22154					0.08351867145120195
GLALALGLW	9	Unmodified	_GLALALGLW_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.65667724609375	2	457.278921	912.543289	0.11303	5.1687E-05	0.228	0.00010426	0.34103	0.00015594	457.2788804146784	59.816	0.46812	59.567	59.294	59.762	-0.24842					18	11	2	0	0	0	0.024475	1	6619	6619		21.702	0	1	180150	+		19704	22253	13813	13839	22155	22155					0.08351867145120195
GLALALGLW	9	Unmodified	_GLALALGLW_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.278921	912.543289	1.3324	0.00060926	-5.6952	-0.0026043	-4.3628	-0.001995	457.2761733029797	59.276	0.63768	59.276	58.999	59.637	0	-0.11748	-0.0019546	NaN	39.021	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517540	+		19705	22253	13813	13839							0.08351867145120195
GLALALGLW	9	Unmodified	_GLALALGLW_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.278921	912.543289	1.2492	0.00057124	-5.3048	-0.0024258	-4.0556	-0.0018545	457.2762763268737	59.489	0.47512	59.289	59.063	59.538	-0.20016	-0.1041	-0.0015976	NaN	39.021	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453720	+		19706	22253	13813	13839							0.08351867145120195
GLALALGLW	9	Unmodified	_GLALALGLW_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.278921	912.543289	0.56757	0.00025954	-4.6899	-0.0021446	-4.1223	-0.0018851	457.276546747509	59.151	0.54874	59.237	58.991	59.54	0.085686	-0.1563	-0.0010352	NaN	39.021	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399470	+		19707	22253	13813	13839							0.08351867145120195
GLALALLLLI	10	Unmodified	_GLALALLLLI_					0	0	0			REV__ENSG00000125810|ENST00000246006|CD93	REV__ENSG00000125810|ENST00000246006|CD93	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.3546447753906	2	505.354628	1008.6947	-0.99082	-0.00050072	0.84106	0.00042503	-0.14977	-7.5684E-05	505.35494830298984	90.481	0.98271	90.326	89.824	90.806	-0.1552					76	23	5	0	0	0	0.59161	1	11045	11045		77.944	0.62626	1	4655800	+		19708	22844	13814	13840	22156	22156					0.19070428452994292
GLALFYGLL	9	Unmodified	_GLALFYGLL_					0	0	0			REV__nc|ENSG00000164007|Q8N6F1-2|CLDN19	REV__nc|ENSG00000164007|Q8N6F1-2|CLDN19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.3056945800781	2	483.786579	965.558604	-1.0335	-0.00050001	-2.8448	-0.0013763	-3.8783	-0.0018763	483.7850796661078	30.365	0.20718	30.44	30.337	30.544	0.074314					7	4	2	0	0	0	0.024475	1	1904	1904		21.702	0	1	245070	+		19709	25668	13815	13841	22157	22157					0.07444733942327275
GLALKVQEV	9	Unmodified	_GLALKVQEV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7926025390625	2	478.792392	955.570232	0.55713	0.00026675	-1.2771	-0.00061146	-0.71995	-0.00034471	478.7917224444457	53.956	1.0744	53.956	53.582	54.656	0					94	30	5	0	0	0	0.028071	5	5870	5846;5857;5870;5884;5897		143.11	49.1	1	17083000			19710	4546	13816	13842	22158;22159;22160;22161;22162	22160					0.09066930965661868
GLALKVQEV	9	Unmodified	_GLALKVQEV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7926330566406	2	478.792392	955.570232	0.20606	9.8659E-05	-0.87364	-0.00041829	-0.66758	-0.00031963	478.79192000556066	54.053	1.0449	53.906	53.566	54.611	-0.14723					103	29	5	0	0	0	0.047345	5	5845	5833;5845;5858;5872;5885		129.68	35.676	1	17657000			19711	4546	13816	13842	22163;22164;22165;22166;22167	22164					0.09066930965661868
GLALKVQEV	9	Unmodified	_GLALKVQEV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7922058105469	2	478.792392	955.570232	-0.04277	-2.0478E-05	-0.77426	-0.00037071	-0.81703	-0.00039119	478.7919667244484	53.73	1.0371	53.825	53.518	54.556	0.095669					95	29	5	0	0	0	0.03849	5	5758	5747;5758;5771;5786;5798		134.81	35.676	1	17839000			19712	4546	13816	13842	22168;22169;22170;22171;22172	22169					0.09066930965661868
GLALKVQEV	9	Unmodified	_GLALKVQEV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7930908203125	2	478.792392	955.570232	-0.6312	-0.00030221	0.16599	7.9475E-05	-0.46521	-0.00022274	478.79234702708044	53.922	0.93793	53.786	53.531	54.469	-0.13617					81	28	4	0	0	0	0.082191	1	5702	5702		116.9	29.149	1	6660600			19713	4546	13816	13842	22173	22173					0.09066930965661868
GLALKVQEV	9	Unmodified	_GLALKVQEV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.79290771484375	2	478.792392	955.570232	-0.14809	-7.0905E-05	-0.36057	-0.00017264	-0.50866	-0.00024354	478.7920739475831	54.1	0.89059	53.855	53.625	54.515	-0.2453					78	27	4	0	0	0	0.16468	1	5725	5725		96.19	13.95	1	6252200			19714	4546	13816	13842	22174	22174					0.09066930965661868
GLALKVQEV	9	Unmodified	_GLALKVQEV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7928161621094	2	478.792392	955.570232	0.06322	3.0269E-05	-0.64899	-0.00031073	-0.58577	-0.00028046	478.7919329312714	54.012	0.92044	53.815	53.556	54.477	-0.19739					74	26	4	0	0	0	0.11092	1	5713	5713		108.09	25.782	1	6655500			19715	4546	13816	13842	22175	22175					0.09066930965661868
GLALLNPAL	9	Unmodified	_GLALLNPAL_					0	0	0		ENSG00000204052|ENST00000372441|LRRC73	ENSG00000204052|ENST00000372441|LRRC73	ENSG00000204052|ENST00000372441|LRRC73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2589416503906	2	441.276378	880.538203	-0.26859	-0.00011852	2.1359	0.00094251	1.8673	0.00082399	441.27638053138463	23.272	0.53245	23.272	23.033	23.566	0					22	12	4	0	0	0	0.024487	1	939	939		40.573	8.6178	1	46920			19716	10295	13817	13843	22176	22176					0.09315563282518724
GLALPEGEGE	10	Unmodified	_GLALPEGEGE_					0	0	0			REV__ENSG00000164794|ENST00000524391|KCNV1	REV__ENSG00000164794|ENST00000524391|KCNV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2905578613281	2	486.237647	970.460741	-1.3066	-0.00063534	-2.8759	-0.0013984	-4.1825	-0.0020337	486.23645341964857	27.363	0.3259	27.445	27.282	27.608	0.081293					14	8	3	0	0	0	0.03519	1	1418	1418		42.396	12.555	1	137260	+		19717	25802	13818	13844	22177	22177					-0.02567119444324817
GLALRYVL	8	Unmodified	_GLALRYVL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.24212646484375	2	452.78437	903.554188	-0.092468	-4.1868E-05	0.26504	0.00012001	0.17257	7.8139E-05	452.78431212558917	60.048	0.36205	59.848	59.691	60.053	-0.20016					14	9	2	0	0	0	0.027866	1	6841	6841		15.636	6.8139	1	136920			19718	4087	13819	13845	22178	22178					0.09855269519414378
GLALVLTIY	9	Unmodified	_GLALVLTIY_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.76116943359375	2	481.799686	961.584819	0.49111	0.00023662	-3.4298	-0.0016525	-2.9387	-0.0014159	481.7979902630921	41.956	0.32877	41.956	41.758	42.087	0					14	9	2	0	0	0	0.024541	1	3793	3793		20.482	0	1	107400			19719	7771	13820	13846	22179	22179					0.10249003113790423
GLAMAKPN	8	Unmodified	_GLAMAKPN_					0	0	0		ENST00000297792.9_1_6:18161585-18171663:+|nuORF;KDM1B|p.W82Gfs*82|1|0.19|ENSG00000165097|chr6:18162863-18162863|T/-|frameshift_variant	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2433166503906	2	401.218006	800.421459	0.29597	0.00011875	0.23198	9.3075E-05	0.52796	0.00021183	401.2180864283294	19.976	0.37918	19.871	19.7	20.079	-0.10477					10	7	2	0	0	0	0.027866	1	467	467		28.254	0	1	13682			19720	11866	13821	13847	22180	22180					0.013265017911066934
GLAPARGLR	9	Unmodified	_GLAPARGLR_					0	0	0			REV__nc|ENSG00000163738|Q9H903-5|MTHFD2L	REV__nc|ENSG00000163738|Q9H903-5|MTHFD2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7712707519531	2	455.782693	909.550834	0.19443	8.8616E-05	0.34344	0.00015653	0.53786	0.00024515	455.78291802798105	73.083	0.15845	73.093	72.986	73.145	0.0096588					5	3	2	0	0	0	0.024487	1	8825	8825		31.955	6.5047	1	33578	+		19721	25627	13822	13848	22181	22181					0.092440194654273
GLAPKDLAF	9	Unmodified	_GLAPKDLAF_					0	0	0			REV__ENSG00000167157|ENST00000372469|PRRX2	REV__ENSG00000167157|ENST00000372469|PRRX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7840576171875	2	466.26601	930.517468	-1.0209	-0.00047603	-0.13411	-6.2529E-05	-1.1551	-0.00053856	466.266744208529	44.587	0.30685	44.438	44.355	44.662	-0.1488					11	8	2	0	0	0	0.024325	1	4239	4239		24.203	0	1	81344	+		19722	26114	13823	13849	22182	22182					0.04942972902836118
GLAPLYPKP	9	Unmodified	_GLAPLYPKP_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.27716064453125	2	478.284203	954.553853	-0.048582	-2.3236E-05	-3.9644	-0.0018961	-4.013	-0.0019194	478.2829205670276	35.344	0.22139	35.344	35.27	35.492	0					6	5	2	0	0	0	0.024381	1	2707	2707		37.159	0	1	60428			19723	8885	13824	13850	22183	22183					0.07475849799561729
GLAPPLTLAK	10	Unmodified	_GLAPPLTLAK_					0	0	0			REV__ENST00000493581.1_1_9:33443725-33447528:-|nuORF	REV__ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.80706787109375	2	490.810585	979.606617	0.53835	0.00026423	3.1199	0.0015313	3.6582	0.0017955	490.81161927476575	96.173	0.62247	96.18	95.862	96.484	0.0065079					20	14	2	0	0	0	0.03519	1	12232	12232		25.574	2.5316	1	405220	+		19724	33767	13825	13851	22184	22184					0.11599807862364742
GLAPTCAYVF	10	Unmodified	_GLAPTCAYVF_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7427368164062	2	521.257328	1040.5001	-0.77946	-0.0004063	3.8078	0.0019849	3.0284	0.0015786	521.2586924052284	44.001	0.2351	43.757	43.632	43.867	-0.2444					7	5	2	0	0	0	0.03519	1	4051	4051		23.042	0	1	109070			19725	4371	13826	13852	22185	22185					-0.018526906944543953
GLAQSGGLTAL	11	Unmodified	_GLAQSGGLTAL_					0	0	0			REV__nc|ENSG00000119125|Q9Y2T3-3|GDA	REV__nc|ENSG00000119125|Q9Y2T3-3|GDA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28924560546875	2	494.277106	986.53966	0.19196	9.4884E-05	-2.599	-0.0012846	-2.407	-0.0011897	494.276077814347	61.545	0.25377	61.318	61.082	61.336	-0.22663					9	6	2	0	0	0	0.023548	1	7096	7096		98.629	5.4339	1	297940	+		19726	22440	13827	13853	22186	22186					0.04585152580614249
GLARDAGKAPD	11	Unmodified	_GLARDAGKAPD_					0	0	0			REV__ENST00000262244.5_1_9:27529561-27529615:-|nuORF	REV__ENST00000262244.5_1_9:27529561-27529615:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7674560546875	2	535.783087	1069.55162	0.00055687	2.9836E-07	2.9753	0.0015941	2.9759	0.0015944	535.784484696369	37.396	0.582	37.396	37.12	37.702	0					33	15	3	0	0	0	0.02478	1	3039	3039		47.96	12.807	1	569540	+		19727	29653	13828	13854	22187	22187					0.01962769323813518
GLARFGAF	8	Unmodified	_GLARFGAF_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.240478515625	2	419.732138	837.449723	-0.23999	-0.00010073	0.98604	0.00041387	0.74604	0.00031314	419.7323406857629	23.471	0.71379	23.291	23.067	23.78	-0.17989					26	16	3	0	0	0	0.027866	1	963	963		9.4706	0	1	249490	+		19728	37783	13829	13855	22188	22188					0.02449567762710103
GLARKIYKRKK	11	Unmodified	_GLARKIYKRKK_					0	0	0		ENST00000424976.1_1_1:187533206-187533260:+|nuORF	ENST00000424976.1_1_1:187533206-187533260:+|nuORF	ENST00000424976.1_1_1:187533206-187533260:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.23883056640625	3	454.301501	1359.88267	1.2864	0.00058442	-1.2857	-0.00058412	0.00066419	3.0174E-07	454.3007395354742	17.828	0.49791	17.674	17.458	17.955	-0.15403					19	9	3	0	0	0	0.024851	1	217	217		1.3219	0	1	56851			19729	14055	13830	13856	22189	22189					0.2171267943008388
GLARVIDVM	9	Unmodified	_GLARVIDVM_					0	0	0			REV__ENSG00000113262|ENST00000517717|GRM6	REV__ENSG00000113262|ENST00000517717|GRM6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2776794433594	2	487.278595	972.542637	-1.0632	-0.00051807	-0.97105	-0.00047317	-2.0342	-0.00099124	487.2779947779413	40.586	0.91746	40.356	40.046	40.964	-0.23028					57	24	3	0	0	0	0.10076	1	3498	3498		110.34	9.1257	1	2642700	+		19730	22052	13831	13857	22190	22190					0.0552670443378247
GLASFKSFL	9	Unmodified	_GLASFKSFL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2734680175781	2	485.273835	968.533118	0.41044	0.00019917	0.055707	2.7033E-05	0.46615	0.00022621	485.27340805735656	71.384	0.87813	71.384	71.026	71.904	0					34	22	2	0	0	0	0.1158	2	8652	8652;8664		107.01	38.221	1	1400200			19731	5624	13832	13858	22191;22192	22191					0.04759259419893169
GLASFKSFL	9	Unmodified	_GLASFKSFL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.27294921875	2	485.273835	968.533118	0.4053	0.00019668	-0.4892	-0.0002374	-0.083905	-4.0717E-05	485.27337545245786	71.7	0.53751	71.411	71.113	71.651	-0.28858					25	13	2	0	0	0	0.22902	1	8669	8669		85.161	5.7098	1	1401700			19732	5624	13832	13858	22193	22193					0.04759259419893169
GLASFKSFL	9	Unmodified	_GLASFKSFL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2737731933594	2	485.273835	968.533118	-0.2063	-0.00010011	0.63729	0.00030926	0.43099	0.00020915	485.2736990507313	71.441	0.79243	71.452	71.162	71.954	0.010735					30	20	2	0	0	0	0.1158	2	8580	8580;8592		107.01	30.233	1	1722400			19733	5624	13832	13858	22194;22195	22194					0.04759259419893169
GLASFKSFL	9	Unmodified	_GLASFKSFL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.27410888671875	2	485.273835	968.533118	0.25137	0.00012198	-0.41006	-0.00019899	-0.1587	-7.7012E-05	485.2734732581141	71.608	0.73251	71.333	71.056	71.788	-0.27509					25	17	2	0	0	0	0.34489	1	8363	8363		69.628	3.7302	1	821880			19734	5624	13832	13858	22196	22196					0.04759259419893169
GLASFKSFL	9	Unmodified	_GLASFKSFL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.273835	968.533118	0.12577	6.1031E-05	0.098033	4.7573E-05	0.2238	0.0001086	485.27369980196397	71.575	0.60378	71.313	71.075	71.679	-0.26199	-0.047523	0.00043665	NaN	107.01	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	587450			19735	5624	13832	13858							0.04759259419893169
GLASFKSFL	9	Unmodified	_GLASFKSFL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.273835	968.533118	0.85705	0.0004159	-0.7394	-0.00035881	0.11765	5.709E-05	485.2733892622003	71.477	0.74328	71.271	70.833	71.577	-0.20613	-0.089713	-0.00037612	NaN	107.01	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545020			19736	5624	13832	13858							0.04759259419893169
GLASKSELQL	10	Unmodified	_GLASKSELQL_					0	0	0			REV__ENSG00000059377|ENST00000448866|TBXAS1	REV__ENSG00000059377|ENST00000448866|TBXAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3013916015625	2	523.298039	1044.58152	-0.98948	-0.00051779	-1.0491	-0.00054898	-2.0386	-0.0010668	523.29775160659	51.773	1.8883	51.86	51.264	53.152	0.087006					123	50	4	0	0	0	0.45367	1	5484	5484		93.195	2.8256	1	22616000	+		19737	20239	13833	13859	22197	22197					0.06101708269147821
GLASRSLPAR	10	Unmodified	_GLASRSLPAR_					0	0	0			REV__ENST00000467201.5_1_7:100174483-100175156:-|nuORF	REV__ENST00000467201.5_1_7:100174483-100175156:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7432861328125	2	514.30399	1026.59343	0.65383	0.00033627	3.2757	0.0016847	3.9295	0.002021	514.3049085273849	70.163	0.32714	69.87	69.633	69.96	-0.29291					11	7	2	0	0	0	0.03519	1	8442	8442		28.081	3.5623	1	78828	+		19738	33065	13834	13860	22198	22198					0.0811936980298924
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.242431640625	2	452.242732	902.470912	0.43437	0.00019644	-1.9307	-0.00087313	-1.4963	-0.00067669	452.2421173809459	53.779	1.6788	53.779	53.404	55.083	0					168	47	6	0	0	0	0.012289	8	5815	5804;5815;5827;5839;5851;5863;5875;5889		227.71	107.09	1	116750000			19739	11059	13835	13861	22199;22200;22201;22202;22203;22204;22205;22206	22200					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2424011230469	2	452.242732	902.470912	-0.080562	-3.6433E-05	-1.4154	-0.00064012	-1.496	-0.00067656	452.2423429650714	53.875	1.823	53.728	53.346	55.169	-0.14723					163	51	6	0	0	0	0.012289	8	5792	5792;5803;5815;5827;5839;5851;5863;5876		227.71	110.81	1	107970000			19740	11059	13835	13861	22207;22208;22209;22210;22211;22212;22213;22214	22207					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2427062988281	2	452.242732	902.470912	-0.23991	-0.0001085	-1.2124	-0.0005483	-1.4523	-0.0006568	452.2424066530748	53.624	1.6782	53.72	53.336	55.014	0.095669					149	47	5	0	0	0	0.012289	9	5752	5705;5716;5728;5740;5752;5764;5776;5788;5828		227.71	105.54	1	123660000			19741	11059	13835	13861	22215;22216;22217;22218;22219;22220;22221;22222;22223	22219					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.2420349121094	2	452.242732	902.470912	-0.81974	-0.00037072	-0.03947	-1.785E-05	-0.85921	-0.00038857	452.2428010465224	53.893	2.2344	53.756	53.393	55.627	-0.13617					177	64	5	0	0	0	0.0087739	8	5692	5646;5656;5668;5680;5692;5705;5718;5730		244.87	115.19	1	101260000			19742	11059	13835	13861	22224;22225;22226;22227;22228;22229;22230;22231	22228					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2428283691406	2	452.242732	902.470912	-0.097964	-4.4303E-05	-0.74663	-0.00033766	-0.84459	-0.00038196	452.2424513497191	54.065	2.1809	53.82	53.458	55.638	-0.2453					179	64	5	0	0	0	0.0087739	8	5703	5669;5679;5691;5703;5715;5728;5742;5755		244.87	115.19	1	105350000			19743	11059	13835	13861	22232;22233;22234;22235;22236;22237;22238;22239	22235					0.015774882809068913
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2419738769531	2	452.242732	902.470912	-0.15491	-7.0056E-05	-0.7831	-0.00035415	-0.938	-0.00042421	452.24244471559166	53.998	2.4833	53.801	53.422	55.905	-0.19739					177	70	5	0	0	0	0.0087739	8	5715	5658;5667;5679;5691;5703;5715;5727;5740		244.87	115.19	1	100380000			19744	11059	13835	13861	22240;22241;22242;22243;22244;22245;22246;22247	22245					0.015774882809068913
GLAVAGLGLLP	11	Unmodified	_GLAVAGLGLLP_					0	0	0			REV__ENST00000506267.1_2_4:174255326-174255392:-|nuORF	REV__ENST00000506267.1_2_4:174255326-174255392:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.80596923828125	2	490.810585	979.606617	0.014644	7.1876E-06	-3.2491	-0.0015947	-3.2344	-0.0015875	490.80903004626015	19.078	0.24678	18.918	18.787	19.034	-0.16079					6	4	2	0	0	0	0.02479	1	366	366		17.365	0	1	22746	+		19745	34022	13836	13862	22248	22248					0.11599807862364742
GLAVAGLGLLP	11	Unmodified	_GLAVAGLGLLP_					0	0	0			REV__ENST00000506267.1_2_4:174255326-174255392:-|nuORF	REV__ENST00000506267.1_2_4:174255326-174255392:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.810585	979.606617	0.7157	0.00035127	-2.8765	-0.0014118	-2.1608	-0.0010606	490.8087614283772	19.148	0.29537	18.946	18.808	19.104	-0.2026	0.01028	0.00044848	NaN	17.365	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15231	+		19746	34022	13836	13862							0.11599807862364742
GLAVIHISM	9	Unmodified	_GLAVIHISM_					0	0	0			REV__ENSG00000164292|ENST00000379982|RHOBTB3	REV__ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7553405761719	2	470.767863	939.521173	0.37183	0.00017505	-1.4348	-0.00067546	-1.063	-0.00050041	470.7675709837826	37.533	0.18708	37.566	37.413	37.6	0.032269					5	4	2	0	0	0	0.024443	1	3000	3000		12.959	0	1	44641	+		19747	25730	13837	13863	22249	22249					0.048993194050581224
GLAVKVWLL	9	Unmodified	_GLAVKVWLL_					0	0	0		ENST00000293831.12_1_17:7481525-7481712:+|nuORF	ENST00000293831.12_1_17:7481525-7481712:+|nuORF	ENST00000293831.12_1_17:7481525-7481712:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.8323059082031	2	499.823495	997.632438	-0.89799	-0.00044884	-3.4918	-0.0017453	-4.3898	-0.0021941	499.82144834007084	44.708	0.58913	44.608	44.317	44.906	-0.099445					30	14	3	0	0	0	0.024517	1	4168	4168		19.36	9.0947	1	842300			19748	11809	13838	13864	22250	22250					0.1335270210464614
GLAVLIDAR	9	Unmodified	_GLAVLIDAR_					0	0	0		ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2568054199219	2	464.284734	926.554916	-0.28201	-0.00013093	0.55806	0.0002591	0.27604	0.00012816	464.2846788891128	54.846	0.69164	54.846	54.558	55.249	0					39	19	3	0	0	0	0.024447	1	5987	5987		19.104	1.7386	1	1207800			19749	6108	13839	13865	22251	22251					0.08870064168456793
GLAVSVLGGP	10	Unmodified	_GLAVSVLGGP_					0	0	0		ENST00000567948.1_2_15:55611123-55611258:-|nuORF;ENST00000563262.5_1_15:55606344-55611258:-|nuORF	ENST00000567948.1_2_15:55611123-55611258:-|nuORF	ENST00000567948.1_2_15:55611123-55611258:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7799072265625	2	435.258185	868.501818	-0.43841	-0.00019082	0.6451	0.00028078	0.20669	8.9964E-05	435.2585704255495	35.398	1.8452	35.398	34.629	36.474	0					68	49	2	0	0	0	0.03519	1	2810	2810		53.351	5.4358	1	357940			19750	16861	13840	13866	22252	22252					0.06230686385822537
GLAWVRRK	8	Unmodified	_GLAWVRRK_					0	0	0			REV__ENST00000378182.3_1_13:50571396-50571693:+|nuORF	REV__ENST00000378182.3_1_13:50571396-50571693:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2691650390625	2	493.306336	984.598118	-0.72313	-0.00035672	-0.70952	-0.00035001	-1.4326	-0.00070673	493.3057788417845	25.786	0.60349	25.614	25.282	25.886	-0.17151					31	14	3	0	0	0	0.027866	1	1186	1186		14.664	0.52697	1	549660	+		19751	31395	13841	13867	22253	22253					0.10520298736412315
GLAYIDAC	8	Unmodified	_GLAYIDAC_					0	0	0			REV__nc|ENSG00000135503|P36896-3|ACVR1B;REV__nc|ENSG00000135503|P36896-2|ACVR1B;REV__nc|ENSG00000135503|P36896-4|ACVR1B	REV__nc|ENSG00000135503|P36896-4|ACVR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1511535644531	2	413.194196	824.37384	-0.11323	-4.6786E-05	-1.268	-0.00052393	-1.3812	-0.00057072	413.19356488722804	81.181	1.826	81.039	79.998	81.824	-0.14248					62	43	2	0	0	0	0.027866	1	9806	9806		20.482	0	1	192170	+		19752	36688;36690;36689	13842	13868	22254	22254					-0.0453719719973833
GLAYMIYK	8	Unmodified	_GLAYMIYK_					0	0	0			REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF	REV__ENST00000415922.6_1_6:26638669-26638894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.28411865234375	2	479.756964	957.499375	-0.19914	-9.554E-05	-2.7146	-0.0013023	-2.9137	-0.0013979	479.75591435666865	75.949	0.25802	75.705	75.653	75.911	-0.24455					9	6	2	0	0	0	0.027866	1	9341	9341		23.037	0	1	207090	+		19753	32069	13843	13869	22255	22255					0.018925146564924944
GLAYVAGIC	9	Unmodified	_GLAYVAGIC_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21;ADAM21|p.C446Lfs*100|1|0.24|ENSG00000139985|chr14:70458836-70458836|G/-|frameshift_variant	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.9154968261719	2	433.725664	865.436775	-0.45469	-0.00019721	-3.445	-0.0014942	-3.8997	-0.0016914	433.7221429861103	33.025	0.57166	33.025	32.715	33.287	0					22	14	2	0	0	0	0.024389	1	2299	2299		14.664	5.8418	1	59596			19754	5383	13844	13870	22256	22256					-0.0013263141170227755
GLCAWALSL	9	Unmodified	_GLCAWALSL_					0	0	0			REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.753173828125	2	467.246763	932.478974	-0.59291	-0.00027704	-4.3357	-0.0020258	-4.9286	-0.0023029	467.2446510182389	38.205	2.3464	38.123	37.36	39.707	-0.082516					91	65	2	0	0	0	0.024262	1	3051	3051		30.504	0	1	573970	+		19755	35459	13845	13871	22257	22257					0.010033439966832702
GLCAWALSL	9	Unmodified	_GLCAWALSL_					0	0	0			REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.753173828125	2	467.246763	932.478974	-0.33068	-0.00015451	-4.2048	-0.0019647	-4.5355	-0.0021192	467.2446956195365	36.366	1.9871	36.323	35.83	37.817	-0.042454					94	54	2	0	0	0	0.024262	1	3051	3051		30.504	3.8107	1	1074300	+		19756	35459	13845	13871	22258	22258					0.010033439966832702
GLCTLQTTLLW	11	Unmodified	_GLCTLQTTLLW_					0	0	0		nc|ENSG00000135637|Q17RM4-3|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;ENSG00000135637|ENST00000393965|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.8917236328125	3	416.893408	1247.65839	-0.66399	-0.00027681	-4.143	-0.0017272	-4.807	-0.002004	416.89161655615413	38.105	0.91098	37.925	37.665	38.576	-0.17929					66	25	4	0	0	0	0.94699	1	3116	3116		48.602	2.1448	1	3090200			19757	4918	13846	13872	22259	22259					0.04447183493948614
GLCTLQTTLLW	11	Unmodified	_GLCTLQTTLLW_					0	0	0		nc|ENSG00000135637|Q17RM4-3|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;ENSG00000135637|ENST00000393965|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	416.893408	1247.65839	-0.85608	-0.00035689	-4.0228	-0.0016771	-4.8789	-0.002034	416.8916478868051	38.049	1.0372	37.827	37.542	38.579	-0.22148	-0.058619	0.00017072	NaN	48.602	66	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2767700			19758	4918	13846	13872							0.04447183493948614
GLCTLQTTLLW	11	Unmodified	_GLCTLQTTLLW_					0	0	0		nc|ENSG00000135637|Q17RM4-3|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;ENSG00000135637|ENST00000393965|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	416.893408	1247.65839	-0.45041	-0.00018777	-4.3075	-0.0017958	-4.758	-0.0019836	416.89151481290264	38.124	1.4224	37.905	37.607	39.029	-0.21848	0.019258	-0.00018537	NaN	48.602	76	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2369400			19759	4918	13846	13872							0.04447183493948614
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.2738037109375	2	510.274032	1018.53351	-1.3871	-0.00070779	0.7868	0.00040148	-0.60028	-0.00030631	510.27443324848696	90.53	2.2009	90.53	90.093	92.294	0					131	52	4	0	0	0	0.014988	7	11444	11423;11432;11444;11456;11468;11482;11495		161.9	37.304	1	32708000			19760	10144	13847	13873	22260;22261;22262;22263;22264;22265;22266	22262					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2735595703125	2	510.274032	1018.53351	-0.17502	-8.931E-05	-0.38241	-0.00019514	-0.55744	-0.00028445	510.2738209542123	90.553	2.0357	90.537	90.077	92.112	-0.016716					109	48	4	0	0	0	0.013333	7	11421	11387;11397;11409;11421;11433;11445;11460		176.41	37.304	1	30368000			19761	10144	13847	13873	22267;22268;22269;22270;22271;22272;22273	22270					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.27398681640625	2	510.274032	1018.53351	0.071912	3.6695E-05	-0.57535	-0.00029359	-0.50344	-0.00025689	510.2737196623369	90.544	2.1866	90.557	90.161	92.347	0.013443					125	52	4	0	0	0	0.021872	5	11356	11356;11368;11380;11392;11405		148.04	27.422	1	33874000			19762	10144	13847	13873	22274;22275;22276;22277;22278	22274					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2735595703125	2	510.274032	1018.53351	-1.0612	-0.00054151	0.78791	0.00040205	-0.2733	-0.00013946	510.27437207471723	90.565	1.5397	90.41	90.022	91.562	-0.1552					77	36	5	0	0	0	0.021872	4	11068	11068;11078;11090;11104		148.04	36.395	1	6310800			19763	10144	13847	13873	22279;22280;22281;22282	22279					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.27374267578125	2	510.274032	1018.53351	-0.81994	-0.00041839	1.1592	0.00059152	0.33928	0.00017312	510.2742331992619	90.567	1.5871	90.442	90.127	91.714	-0.12513					81	37	4	0	0	0	0.014988	3	11082	11082;11092;11104		161.9	14.205	1	6003600			19764	10144	13847	13873	22283;22284;22285	22283					0.024986343491036678
GLDELFVQV	9	Unmodified	_GLDELFVQV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.27362060546875	2	510.274032	1018.53351	0.19686	0.00010045	-0.67578	-0.00034483	-0.47892	-0.00024438	510.2736652055327	90.61	1.9781	90.472	90.156	92.134	-0.13824					81	46	4	0	0	0	0.014988	5	11077	11067;11077;11089;11102;11115		161.9	36.395	1	6443000			19765	10144	13847	13873	22286;22287;22288;22289;22290	22287					0.024986343491036678
GLDETIAKL	9	Unmodified	_GLDETIAKL_					0	0	0		ENSG00000109061|ENST00000226207|MYH1;MYH8|p.M985I|1|0.37|ENSG00000133020|chr17:10401428-10401428|C/T|missense_variant;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000125414|ENST00000245503|MYH2;ENSG00000264424|ENST00000255381|MYH4;MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant	ENSG00000109061|ENST00000226207|MYH1;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000264424|ENST00000255381|MYH4	ENSG00000133020|ENST00000403437|MYH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2744140625	2	480.274032	958.533512	0.40303	0.00019356	-0.49033	-0.00023549	-0.0873	-4.1928E-05	480.273710945722	60.237	0.89212	60.237	59.914	60.807	0					43	23	3	0	0	0	0.013887	3	6914	6904;6914;6927		180.93	47.113	1	6666900			19766	4669;2957;10964;2956	13848	13874	22291;22292;22293	22292					0.05258634349092972
GLDETIAKL	9	Unmodified	_GLDETIAKL_					0	0	0		ENSG00000109061|ENST00000226207|MYH1;MYH8|p.M985I|1|0.37|ENSG00000133020|chr17:10401428-10401428|C/T|missense_variant;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000125414|ENST00000245503|MYH2;ENSG00000264424|ENST00000255381|MYH4;MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant	ENSG00000109061|ENST00000226207|MYH1;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000264424|ENST00000255381|MYH4	ENSG00000133020|ENST00000403437|MYH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2746276855469	2	480.274032	958.533512	-0.30799	-0.00014792	0.19396	9.3155E-05	-0.11402	-5.4763E-05	480.2740443266481	60.463	0.75206	60.249	59.852	60.604	-0.21339					41	19	3	0	0	0	0.016758	3	6907	6907;6917;6929		153.04	44.948	1	6437600			19767	4669;2957;10964;2956	13848	13874	22294;22295;22296	22294					0.05258634349092972
GLDETIAKL	9	Unmodified	_GLDETIAKL_					0	0	0		ENSG00000109061|ENST00000226207|MYH1;MYH8|p.M985I|1|0.37|ENSG00000133020|chr17:10401428-10401428|C/T|missense_variant;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000125414|ENST00000245503|MYH2;ENSG00000264424|ENST00000255381|MYH4;MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant	ENSG00000109061|ENST00000226207|MYH1;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000264424|ENST00000255381|MYH4	ENSG00000133020|ENST00000403437|MYH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2745056152344	2	480.274032	958.533512	-1.5358	-0.0007376	1.3152	0.00063165	-0.22059	-0.00010594	480.27458663783926	60.082	0.97146	60.16	59.826	60.797	0.078888					48	25	3	0	0	0	0.016758	3	6833	6808;6818;6833		153.04	30.86	1	5668600			19768	4669;2957;10964;2956	13848	13874	22297;22298;22299	22299					0.05258634349092972
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.8028564453125	2	560.803488	1119.59242	-0.084289	-4.727E-05	-0.10931	-6.13E-05	-0.1936	-0.00010857	560.80334384719	69.685	0.61037	69.685	69.344	69.954	0					34	14	3	0	0	0	0.50091	1	8402	8402		88.177	42.225	1	1775900			19769	7398	13849	13875	22300	22300					0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.7781982421875	2	560.803488	1119.59242	0.40974	0.00022978	-0.8127	-0.00045577	-0.40297	-0.00022599	560.8030304572794	69.991	0.57405	69.698	69.386	69.96	-0.29292					32	13	3	0	0	0	0.03519	1	8421	8421		41.427	8.6142	1	1580500			19770	7398	13849	13875	22301	22301					0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.803488	1119.59242	-0.49124	-0.00027549	-0.025738	-1.4434E-05	-0.51698	-0.00028993	560.803484953613	69.781	0.52994	69.794	69.463	69.993	0.012421	0.073357	0.00010262	NaN	20.837	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728900			19771	7398	13849	13875							0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.803488	1119.59242	-0.4363	-0.00024468	0.50162	0.00028131	0.065314	3.6628E-05	560.8036707199872	70.035	0.50571	69.768	69.493	69.999	-0.26725	0.047132	0.00069411	NaN	20.837	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	795490			19772	7398	13849	13875							0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	560.803488	1119.59242	0.01489	8.3503E-06	0.29428	0.00016503	0.30917	0.00017338	560.8034788630636	69.962	0.58345	69.711	69.399	69.983	-0.25063	-0.0093895	0.00046155	NaN	20.837	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	707370			19773	7398	13849	13875							0.03741110643431966
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.803488	1119.59242	-0.16553	-9.2831E-05	0.20382	0.0001143	0.038289	2.1472E-05	560.8035238119865	69.89	0.53645	69.668	69.432	69.969	-0.22245	-0.052856	0.0003601	NaN	20.837	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	751500			19774	7398	13849	13875							0.03741110643431966
GLDKSFKKAL	10	Unmodified	_GLDKSFKKAL_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8302612304688	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0002	2	11271	11260;11271		45.972	2.8061	1	4870500	+		19775	29088	13850	13876	22302;22303	22303					0.10094577919812764
GLDKSFKKAL	10	Unmodified	_GLDKSFKKAL_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8298950195312	2	553.832049	1105.64954	0.36825	0.00020395	-4.0996	-0.0022705	-3.7314	-0.0020666	553.8296512023196	87.117	2.5491	87.138	85.735	88.284	0.021255					196	60	4	0	0	0	1.0236	1	10880	10880		42.864	7.246	1	1337200	+		19776	29088	13850	13876	22304	22304					0.10094577919812764
GLDKSFKKAL	10	Unmodified	_GLDKSFKKAL_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8300170898438	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	1.0616	1	10622	10622		37.812	1.3648	1	1711900	+		19777	29088	13850	13876	22305	22305					0.10094577919812764
GLDKSFKKAL	10	Unmodified	_GLDKSFKKAL_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	1.0344	1	10686	10686		41.427	3.6151	1	1748900	+		19778	29088	13850	13876	22306	22306					0.10094577919812764
GLDKSFKKAL	10	Unmodified	_GLDKSFKKAL_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8301391601562	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.0719	1	10950	10950		36.447	3.6343	1	5986700	+		19779	29088	13850	13876	22307	22307					0.10094577919812764
GLDPQGDRSFL	11	Unmodified	_GLDPQGDRSFL_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	602.80126953125	2	602.801477	1203.5884	-0.8569	-0.00051654	0.84892	0.00051173	-0.0079878	-4.815E-06	602.8018742651831	58.438	0.90892	58.438	58.126	59.035	0					57	24	4	0	0	0	0.27523	1	6628	6628		91.469	23.975	1	3164100			19780	10915	13851	13877	22308	22308					-0.005249788502851516
GLDPQGDRSFL	11	Unmodified	_GLDPQGDRSFL_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	602.8018798828125	2	602.801477	1203.5884	-0.24989	-0.00015063	0.3187	0.00019211	0.068813	4.148E-05	602.8014761294249	58.662	0.65926	58.475	58.206	58.866	-0.18705					52	17	4	0	0	0	0.37749	1	6636	6636		84.31	27.877	1	2952900			19781	10915	13851	13877	22309	22309					-0.005249788502851516
GLDPQGDRSFL	11	Unmodified	_GLDPQGDRSFL_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	602.8018188476562	2	602.801477	1203.5884	-1.1689	-0.00070461	1.161	0.00069988	-0.007854	-4.7344E-06	602.8020117558376	58.261	0.69507	58.352	58.05	58.745	0.091217					58	18	5	0	0	0	0.18421	2	6521	6521;6533		100.82	42.589	1	2763600			19782	10915	13851	13877	22310;22311	22310					-0.005249788502851516
GLDPSGARLV	10	Unmodified	_GLDPSGARLV_					0	0	0		NIPBL-WDR70|1|fusion;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.77532958984375	2	492.777274	983.539994	0.34573	0.00017037	-0.9844	-0.00048509	-0.63868	-0.00031472	492.77673757275386	51.608	0.69386	51.608	51.248	51.942	0					47	19	3	0	0	0	0.47897	1	5483	5483		90.601	41.159	1	4034900			19783	18873	13852	13878	22312	22312					0.04756572300482276
GLDPSGARLV	10	Unmodified	_GLDPSGARLV_					0	0	0		NIPBL-WDR70|1|fusion;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.77520751953125	2	492.777274	983.539994	-0.61618	-0.00030364	0.015627	7.7005E-06	-0.60055	-0.00029594	492.77723844569505	51.754	0.72106	51.607	51.3	52.021	-0.14735					46	20	3	0	0	0	0.56936	1	5483	5483		80.455	18.347	1	3836700			19784	18873	13852	13878	22313	22313					0.04756572300482276
GLDPSGARLV	10	Unmodified	_GLDPSGARLV_					0	0	0		NIPBL-WDR70|1|fusion;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.7759094238281	2	492.777274	983.539994	-1.0807	-0.00053256	0.43541	0.00021456	-0.64532	-0.000318	492.7774398285555	51.518	0.69872	51.605	51.227	51.926	0.087006					45	19	3	0	0	0	0.6365	1	5402	5402		72.879	1.5835	1	3658400			19785	18873	13852	13878	22314	22314					0.04756572300482276
GLDPSGARLV	10	Unmodified	_GLDPSGARLV_					0	0	0		NIPBL-WDR70|1|fusion;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.777274	983.539994	-0.041317	-2.036E-05	0.81815	0.00040317	0.77683	0.00038281	492.7776707444654	51.677	0.438	51.558	51.281	51.719	-0.11875	-0.067696	0.00085763	NaN	90.601	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569090			19786	18873	13852	13878							0.04756572300482276
GLDPSGARLV	10	Unmodified	_GLDPSGARLV_					0	0	0		NIPBL-WDR70|1|fusion;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.777274	983.539994	-1.8147	-0.00089423	1.7204	0.00084779	-0.094245	-4.6442E-05	492.77810600279463	51.968	0.57972	51.699	51.438	52.018	-0.26903	0.073069	0.0017469	NaN	90.601	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527660			19787	18873	13852	13878							0.04756572300482276
GLDPSGARLV	10	Unmodified	_GLDPSGARLV_					0	0	0		NIPBL-WDR70|1|fusion;ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.777274	983.539994	0.68201	0.00033608	0.53871	0.00026546	1.2207	0.00060154	492.7775781712959	51.861	0.36651	51.677	51.412	51.778	-0.18404	0.050976	0.00058222	NaN	90.601	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420580			19788	18873	13852	13878							0.04756572300482276
GLDRLNVTV	9	Unmodified	_GLDRLNVTV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7832946777344	2	493.785099	985.555644	-0.039765	-1.9635E-05	-0.5229	-0.0002582	-0.56266	-0.00027783	493.78482204656893	56.714	1.0029	56.714	56.07	57.073	0					88	28	5	0	0	0	0.54416	1	6331	6331		56.434	0.92959	1	7528300			19789	6538	13853	13879	22315	22315					0.06228858817519267
GLDRLNVTV	9	Unmodified	_GLDRLNVTV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7844543457031	2	493.785099	985.555644	-0.40118	-0.0001981	-0.12842	-6.3411E-05	-0.5296	-0.00026151	493.78498529325793	56.868	1.0583	56.704	55.986	57.045	-0.16431					89	29	4	0	0	0	0.40693	1	6333	6333		65.465	1.2581	1	6512500			19790	6538	13853	13879	22316	22316					0.06228858817519267
GLDRLNVTV	9	Unmodified	_GLDRLNVTV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7833557128906	2	493.785099	985.555644	-0.39549	-0.00019529	-0.15148	-7.4797E-05	-0.54697	-0.00027009	493.78499496875804	56.508	1.051	56.606	55.965	57.016	0.097893					92	29	4	0	0	0	0.30449	2	6234	6234;6246		75.043	10.836	1	6788600			19791	6538	13853	13879	22317;22318	22317					0.06228858817519267
GLDRLNVTV	9	Unmodified	_GLDRLNVTV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7850036621094	2	493.785099	985.555644	-0.57767	-0.00028524	0.81004	0.00039999	0.23237	0.00011474	493.78527552627673	56.798	1.0005	56.631	56.001	57.001	-0.1672					50	25	4	0	0	0	0.22902	1	6167	6167		85.161	7.8432	1	2583200			19792	6538	13853	13879	22319	22319					0.06228858817519267
GLDVLVGSQ	9	Unmodified	_GLDVLVGSQ_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.2457580566406	2	444.245275	886.475997	0.24163	0.00010734	-0.061634	-2.738E-05	0.17999	7.9961E-05	444.24543220448146	102.93	1.3256	102.81	102.15	103.48	-0.12724					79	31	4	0	0	0	0.80003	1	12779	12779		39.253	0.44669	1	6673700	+		19793	24090	13854	13880	22320	22320					0.028217921435384596
GLDWLSHEL	9	Unmodified	_GLDWLSHEL_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	ENSG00000004059|ENST00000000233|ARF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.26904296875	2	535.269281	1068.52401	-0.91415	-0.00048931	0.54746	0.00029304	-0.36668	-0.00019627	535.2695160091689	76.075	0.70426	76.075	75.769	76.473	0					44	17	3	0	0	0	0.028071	1	9373	9373		143.11	71.229	1	704350			19794	736	13855	13881	22321	22321					-0.007511339364327796
GLDWLSHEL	9	Unmodified	_GLDWLSHEL_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	ENSG00000004059|ENST00000000233|ARF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.3436279296875	2	535.269281	1068.52401	-0.8461	-0.00045289	0.83795	0.00044853	-0.0081533	-4.3642E-06	535.269626801416	76.227	0.78056	75.999	75.704	76.485	-0.22843					42	19	3	0	0	0	0.022083	1	9384	9384		76.774	14.667	1	866620			19795	736	13855	13881	22322	22322					-0.007511339364327796
GLEEPLLLL	9	Unmodified	_GLEEPLLLL_					0	0	0		ENST00000337471.8_1_22:22379928-22380309:-|nuORF	ENST00000337471.8_1_22:22379928-22380309:-|nuORF	ENST00000337471.8_1_22:22379928-22380309:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.80316162109375	2	498.802426	995.590298	0.4183	0.00020865	-0.59098	-0.00029478	-0.17268	-8.6134E-05	498.8020077992988	99.748	0.53442	99.743	99.477	100.01	-0.0050888					27	12	4	0	0	0	0.70186	1	12697	12697		45.952	0	1	421810			19796	12422	13856	13882	22323	22323					0.0923268190562112
GLEFCVQLS	9	Unmodified	_GLEFCVQLS_					0	0	0		ENST00000594723.1_1_19:49138622-49138766:-|nuORF	ENST00000594723.1_1_19:49138622-49138766:-|nuORF	ENST00000594723.1_1_19:49138622-49138766:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2951965332031	2	498.24696	994.479368	-0.46852	-0.00023344	-4.2788	-0.0021319	-4.7473	-0.0023653	498.2436628924138	34.622	0.31635	34.617	34.452	34.769	-0.0045624					10	7	2	0	0	0	0.024374	1	2578	2578		40.778	27.324	1	60836			19797	17412	13857	13883	22324	22324					-0.01809281074122282
GLERLKPTPLR	11	Unmodified	_GLERLKPTPLR_					0	0	0			REV__nc|ENSG00000111554|Q8TC05-4|MDM1	REV__nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2645568847656	3	427.266345	1278.7772	-0.029898	-1.2774E-05	-4.446	-0.0018996	-4.4759	-0.0019124	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0563	1	5992	5992		23.378	1.6922	1	50736000	+		19798	21924	13858	13884	22325	22325					0.14896718513841734
GLFAFRIV	8	Unmodified	_GLFAFRIV_					0	0	0		ENST00000469132.1_1_6:32947934-32948492:+|nuORF	ENST00000469132.1_1_6:32947934-32948492:+|nuORF	ENST00000469132.1_1_6:32947934-32948492:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7587890625	2	461.779088	921.543623	-0.92233	-0.00042591	0.16137	7.4518E-05	-0.76096	-0.0003514	461.77879019268784	30.949	0.32997	30.949	30.717	31.047	0					10	7	2	0	0	0	0.027866	1	2015	2015		14.664	0	1	89282			19799	14898	13859	13885	22326	22326					0.0797128686498354
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.2733764648438	2	521.273835	1040.53312	-1.8548	-0.00096685	1.0423	0.00054333	-0.81248	-0.00042352	521.2741860513054	90.818	0.53843	90.818	90.594	91.133	0					34	12	4	0	0	0	0.10076	2	11500	11489;11500		110.34	47.359	1	1257800			19800	18304	13860	13886	22327;22328	22328					0.014472594198878141
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.2739868164062	2	521.273835	1040.53312	-0.37222	-0.00019403	-0.63115	-0.000329	-1.0034	-0.00052303	521.2732879088437	90.817	0.58079	90.8	90.612	91.193	-0.016716					35	13	4	0	0	0	0.10076	2	11455	11455;11466		110.34	46.13	1	1197600			19801	18304	13860	13886	22329;22330	22329					0.014472594198878141
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.2741088867188	2	521.273835	1040.53312	0.10324	5.3817E-05	-0.81928	-0.00042707	-0.71604	-0.00037325	521.2732032512687	90.854	0.57851	90.865	90.659	91.237	0.011276					39	13	4	0	0	0	0.43973	2	11413	11413;11424		63.306	17.334	1	1072500			19802	18304	13860	13886	22331;22332	22331					0.014472594198878141
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2733764648438	2	521.273835	1040.53312	-1.3637	-0.00071087	0.65307	0.00034043	-0.71065	-0.00037044	521.273862504619	90.764	1.1267	90.609	90.305	91.432	-0.1552					51	26	4	0	0	0	0.43973	1	11117	11117		63.306	13.865	1	1214300			19803	18304	13860	13886	22333	22333					0.014472594198878141
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2735595703125	2	521.273835	1040.53312	-0.38013	-0.00019815	-0.22925	-0.0001195	-0.60938	-0.00031765	521.273433948968	90.771	0.9089	90.646	90.29	91.199	-0.12513					40	21	4	0	0	0	0.17455	1	11131	11131		94.006	41.07	1	1086400			19804	18304	13860	13886	22334	22334					0.014472594198878141
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.273193359375	2	521.273835	1040.53312	0.41442	0.00021603	-1.1765	-0.00061327	-0.76206	-0.00039724	521.2729411421282	90.827	0.99538	90.687	90.449	91.444	-0.13941					46	23	4	0	0	0	0.55828	1	11122	11122		55.504	4.3115	1	1133700			19805	18304	13860	13886	22335	22335					0.014472594198878141
GLFARYSV	8	Unmodified	_GLFARYSV_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.77142333984375	2	456.750527	911.486502	-0.018719	-8.55E-06	-3.0829	-0.0014081	-3.1016	-0.0014167	456.7475707514308	73.337	0.22262	73.347	73.217	73.44	0.0096512					8	5	2	0	0	0	0.027866	1	8870	8870		30.504	5.0535	1	60039			19806	5956	13861	13887	22336	22336					0.027218195886121066
GLFDTAISL	9	Unmodified	_GLFDTAISL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.75579833984375	2	468.755475	935.496398	0.043144	2.0224E-05	0.77008	0.00036098	0.81323	0.0003812	468.75572005241247	94.247	1.1748	94.247	93.91	95.085	-0.00023651					75	27	4	0	0	0	0.59099	2	11946	11946;11957		53.351	7.3995	1	2005900			19807	1009	13862	13888	22337;22338	22337					0.026069628033155823
GLFDTAISL	9	Unmodified	_GLFDTAISL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.7563781738281	2	468.755475	935.496398	0.11329	5.3107E-05	0.59658	0.00027965	0.70988	0.00033276	468.75562813213844	94.296	1.214	94.302	93.971	95.185	0.0059814					78	28	4	0	0	0	0.83071	1	11904	11904		37.159	5.2042	1	2570500			19808	1009	13862	13888	22339	22339					0.026069628033155823
GLFDTAISL	9	Unmodified	_GLFDTAISL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.755475	935.496398	-0.6176	-0.0002895	1.5864	0.00074361	0.96876	0.00045411	468.7560531737696	94.247	0.75985	94.109	93.834	94.594	-0.13779	-0.095659	0.00077758	NaN	53.351	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241060			19809	1009	13862	13888							0.026069628033155823
GLFDTAISL	9	Unmodified	_GLFDTAISL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.755475	935.496398	0.46978	0.00022021	0.62078	0.00029099	1.0906	0.0005112	468.75560147076055	94.255	0.92824	94.132	93.842	94.77	-0.12215	-0.072548	-0.00012766	NaN	53.351	48	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497330			19810	1009	13862	13888							0.026069628033155823
GLFDTAISL	9	Unmodified	_GLFDTAISL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.755475	935.496398	-0.38884	-0.00018227	1.09	0.00051095	0.70118	0.00032868	468.75584682326314	94.322	0.80281	94.174	93.869	94.672	-0.14771	-0.030477	0.00031225	NaN	53.351	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615970			19811	1009	13862	13888							0.026069628033155823
GLFFMKQSV	9	Oxidation (M)	_GLFFM(Oxidation (M))KQSV_		GLFFM(1)KQSV		GLFFM(140)KQSV	0	0	1		ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.7772827148438	2	536.778428	1071.5423	-0.68176	-0.00036595	0.35059	0.00018819	-0.33117	-0.00017776	536.7785335000649	57.182	0.65997	57.182	56.872	57.532	0					46	17	3	0	0	0	0.028071	1	6431	6431		143.11	60.802	1	3014700			19812	16776	13863	13889	22340	22340		542			0.009392847139224614
GLFFMKQSV	9	Oxidation (M)	_GLFFM(Oxidation (M))KQSV_		GLFFM(1)KQSV		GLFFM(120)KQSV	0	0	1		ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	ENST00000559345.5_1_15:79165548-79172860:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7772216796875	2	536.778428	1071.5423	-0.13563	-7.2801E-05	-0.3521	-0.000189	-0.48773	-0.0002618	536.7781437620977	57.308	0.77425	57.142	56.844	57.618	-0.16515					51	20	3	0	0	0	0.082191	1	6419	6419		116.9	45.608	1	2510600			19813	16776	13863	13889	22341	22341		542			0.009392847139224614
GLFGGSSKI	9	Unmodified	_GLFGGSSKI_					0	0	0		ENST00000593785.5_1_19:48000055-48018221:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;ENSG00000105402|ENST00000263354|NAPA	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.24273681640625	2	433.242535	864.470518	-0.61872	-0.00026806	0.79834	0.00034588	0.17962	7.7819E-05	433.24277162423095	51.346	0.92073	51.433	51.077	51.998	0.087006					49	25	3	0	0	0	0.34489	1	5360	5360		69.628	16.276	1	1402800			19814	2672	13864	13890	22342	22342					0.03286113351714448
GLFKHLKHI	9	Unmodified	_GLFKHLKHI_					0	0	0			REV__ENSG00000108559|ENST00000573584|NUP88	REV__ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.841796875	2	546.837468	1091.66038	0.67567	0.00036948	4.1568	0.0022731	4.8325	0.0026426	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	0.83071	1	12443	12443		37.159	2.9866	1	9262700	+		19815	21746	13865	13891	22343	22343					0.11822025084734378
GLFLLGLVFG	10	Unmodified	_GLFLLGLVFG_					0	0	0			REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF	REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2977905273438	2	518.315503	1034.61645	-0.80329	-0.00041636	3.55	0.00184	2.7467	0.0014236	518.3165797356241	102.73	0.27191	102.73	102.57	102.84	0					9	6	2	0	0	0	0.03519	1	13177	13177		54.765	0	1	255700	+		19816	28129	13866	13892	22344	22344					0.10052995867749814
GLFMYVMAV	9	Oxidation (M)	_GLFM(Oxidation (M))YVMAV_		GLFM(0.993)YVM(0.007)AV		GLFM(21)YVM(-21)AV	0	0	1			REV__ENSG00000118160|ENST00000236877|SLC8A2	REV__ENSG00000118160|ENST00000236877|SLC8A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.7568969726562	2	523.756107	1045.49766	-1.4252	-0.00074643	1.8834	0.00098643	0.45823	0.00024	523.7568702062606	52.341	0.85699	52.072	51.656	52.513	-0.26903					43	22	3	0	0	0	0.48384	1	5417	5417		60.404	7.4669	2	2844100	+		19817	22389	13867	13893	22345	22345		663			-0.023268624237744007
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.776611328125	2	475.776545	949.538538	1.3999	0.00066603	-1.2385	-0.00058927	0.16135	7.6765E-05	475.77575981255006	71.6	1.1478	71.6	71.185	72.333	0					74	29	4	0	0	0	0.14584	5	8710	8663;8674;8685;8697;8710		100.36	27.74	1	3138600			19818	3553	13868	13894	22346;22347;22348;22349;22350	22350					0.06174983002358658
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7768859863281	2	475.776545	949.538538	0.91007	0.00043299	-0.67122	-0.00031935	0.23885	0.00011364	475.77602675902403	71.958	1.2625	71.67	71.074	72.337	-0.28858					91	32	4	0	0	0	0.32257	4	8714	8680;8704;8714;8729		72.62	23.409	1	4142500			19819	3553	13868	13894	22351;22352;22353;22354	22353					0.06174983002358658
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.77655029296875	2	475.776545	949.538538	0.53093	0.0002526	-0.40466	-0.00019253	0.12626	6.0074E-05	475.7761963049872	71.682	1.2507	71.693	71.2	72.451	0.010735					82	32	4	0	0	0	0.48384	4	8608	8608;8620;8633;8646		60.404	15.873	1	3342100			19820	3553	13868	13894	22355;22356;22357;22358	22355					0.06174983002358658
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.776545	949.538538	0.50909	0.00024221	1.0824	0.00051496	1.5915	0.00075718	475.77640412752646	71.877	0.68156	71.602	71.188	71.87	-0.27509	0.0090067	0.0015858	NaN	100.36	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505330			19821	3553	13868	13894							0.06174983002358658
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.776545	949.538538	0.25337	0.00012055	0.56373	0.00026821	0.8171	0.00038876	475.77645331069886	71.777	0.68398	71.515	71.2	71.884	-0.26199	-0.077849	0.0010923	NaN	100.36	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373440			19822	3553	13868	13894							0.06174983002358658
GLFPAPIHV	9	Unmodified	_GLFPAPIHV_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.776545	949.538538	0.30761	0.00014635	0.42278	0.00020115	0.73039	0.0003475	475.7764241100696	71.684	0.68208	71.478	71.139	71.821	-0.20613	-0.11487	0.00095817	NaN	100.36	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483250			19823	3553	13868	13894							0.06174983002358658
GLFPARKI	8	Unmodified	_GLFPARKI_					0	0	0			REV__nc|ENSG00000168067|Q12851-2|MAP4K2	REV__nc|ENSG00000168067|Q12851-2|MAP4K2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2847900390625	2	451.284537	900.554522	-0.30932	-0.00013959	0.11935	5.3859E-05	-0.18998	-8.5734E-05	451.2844938585784	53.738	0.68433	53.54	53.238	53.922	-0.19739					65	20	5	0	0	0	0.9224	2	5635	5635;5647		49.211	2.4444	1	5175900	+		19824	26227	13869	13895	22359;22360	22359					0.10026689239259667
GLFPWTPKL	9	Unmodified	_GLFPWTPKL_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.8053588867188	2	529.805303	1057.59605	-0.17643	-9.3472E-05	1.6885	0.00089456	1.5121	0.00080109	529.8051847552482	81.501	0.96123	81.307	80.882	81.844	-0.19334					63	22	4	0	0	0	0.34489	1	9805	9805		69.628	16.691	1	780460			19825	4658	13870	13896	22361	22361					0.0695582520793323
GLFPWTPKL	9	Unmodified	_GLFPWTPKL_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.805419921875	2	529.805303	1057.59605	-0.49071	-0.00025998	2.3817	0.0012619	1.891	0.0010019	529.8053284318913	81.525	1.0113	81.383	80.942	81.954	-0.14248					67	23	4	0	0	0	0.34489	1	9772	9772		69.628	23.655	1	768120			19826	4658	13870	13896	22362	22362					0.0695582520793323
GLFQGKTPL	9	Unmodified	_GLFQGKTPL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7791748046875	2	480.779285	959.544017	0.094122	4.5252E-05	-0.17823	-8.5687E-05	-0.084103	-4.0435E-05	480.7791767497654	56.371	0.77057	56.371	56.07	56.841	0					56	21	3	0	0	0	0.021872	4	6284	6273;6284;6296;6311		148.04	68.592	1	9255600			19827	1867	13871	13897	22363;22364;22365;22366	22364					0.06262661794187352
GLFQGKTPL	9	Unmodified	_GLFQGKTPL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.77777099609375	2	480.779285	959.544017	-0.44967	-0.00021619	0.34233	0.00016459	-0.10734	-5.1605E-05	480.7793929324141	56.529	1.214	56.365	55.986	57.2	-0.16431					69	33	4	0	0	0	0.015925	4	6261	6261;6272;6284;6298		157.21	77.269	1	8345700			19828	1867	13871	13897	22367;22368;22369;22370	22367					0.06262661794187352
GLFQGKTPL	9	Unmodified	_GLFQGKTPL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.77899169921875	2	480.779285	959.544017	-0.66171	-0.00031814	0.46668	0.00022437	-0.19503	-9.3768E-05	480.77947499564044	56.198	1.4607	56.296	55.707	57.168	0.097897					72	40	3	0	0	0	0.015925	4	6172	6161;6172;6185;6199		157.21	77.269	1	9285800			19829	1867	13871	13897	22371;22372;22373;22374	22372					0.06262661794187352
GLFQGKTPL	9	Unmodified	_GLFQGKTPL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.77850341796875	2	480.779285	959.544017	0.1381	6.6396E-05	-0.19753	-9.497E-05	-0.059432	-2.8574E-05	480.7792392129343	56.395	0.97427	56.239	55.933	56.907	-0.15655					54	24	3	0	0	0	0.016758	3	6112	6100;6112;6124		153.04	62.683	1	7212700			19830	1867	13871	13897	22375;22376;22377	22376					0.06262661794187352
GLFQGKTPL	9	Unmodified	_GLFQGKTPL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.7781677246094	2	480.779285	959.544017	0.13536	6.508E-05	-0.2719	-0.00013072	-0.13654	-6.5644E-05	480.7791685130616	56.509	1.0279	56.293	55.92	56.948	-0.21607					56	26	3	0	0	0	0.047345	3	6123	6111;6123;6135		129.68	58.387	1	8155700			19831	1867	13871	13897	22378;22379;22380	22379					0.06262661794187352
GLFQGKTPL	9	Unmodified	_GLFQGKTPL_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.77740478515625	2	480.779285	959.544017	0.2159	0.0001038	-0.38463	-0.00018492	-0.16873	-8.1122E-05	480.77911640328307	56.512	1.2991	56.288	55.736	57.035	-0.2248					52	33	2	0	0	0	0.03849	3	6105	6105;6117;6129		134.81	55.36	1	8153800			19832	1867	13871	13897	22381;22382;22383	22381					0.06262661794187352
GLFSNQWGA	9	Unmodified	_GLFSNQWGA_					0	0	0			REV__ENST00000403766.7_1_13:99970315-99992772:+|nuORF	REV__ENST00000403766.7_1_13:99970315-99992772:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2380065917969	2	490.235242	978.45593	0.35268	0.0001729	1.0634	0.0005213	1.4161	0.0006942	490.23557364228276	99.219	0.7554	99.219	98.823	99.578	0					49	16	4	0	0	0	0.87448	1	12665	12665		34.173	3.6689	1	405360	+		19833	31896	13872	13898	22384	22384					-0.03415958796426821
GLFTSFVIL	9	Unmodified	_GLFTSFVIL_					0	0	0		LTR7_dup44|chr1:68391563-68391992:+|3.235754284173181|0.0420243698243528|6.27|488.0|32|3|anti-sense;LTR7Y_dup61|chr4:182818487-182818919:+|8.954530819965708|0.2488539134292584|5.17|519.0|31|3|anti-sense;LTR7Y_dup215|chr17:11976514-11976947:+|3.240339189048157|0.4721094976596665|2.78|496.0|21|1|anti-sense	LTR7_dup44|chr1:68391563-68391992:+|3.235754284173181|0.0420243698243528|6.27|488.0|32|3|anti-sense	LTR7_dup44|chr1:68391563-68391992:+|3.235754284173181|0.0420243698243528|6.27|488.0|32|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.789794921875	2	498.791861	995.569169	-0.2221	-0.00011078	-3.8525	-0.0019216	-4.0746	-0.0020324	498.7897899982468	70.327	0.98048	70.055	69.447	70.427	-0.27171					75	24	6	0	0	0	0.36105	1	8169	8169		68.485	2.5872	1	7741200			19834	17939	13873	13899	22385	22385					0.07120716596762122
GLFVTEKT	8	Unmodified	_GLFVTEKT_					0	0	0			REV__OVGP1|p.S459F|1|0.06|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	REV__OVGP1|p.S459F|1|0.06|ENSG00000085465|chr1:111415125-111415125|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.73785400390625	2	447.750193	893.485833	-0.048956	-2.192E-05	1.6394	0.00073402	1.5904	0.0007121	447.7517765865729	41.468	0.30177	41.333	41.176	41.478	-0.13553					10	7	2	0	0	0	0.027866	1	3664	3664		26.796	1.3459	1	30367	+		19835	37342	13874	13900	22386	22386					0.03482980148908155
GLFVVLGF	8	Unmodified	_GLFVVLGF_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH;REV__ENST00000433355.6_1_6:146231577-146267398:-|nuORF	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2347717285156	2	426.254914	850.495276	-0.37229	-0.00015869	3.179	0.001355	2.8067	0.0011964	426.2560974960787	27.693	0.29898	27.774	27.534	27.833	0.081293					14	7	3	0	0	0	0.027866	1	1469	1469		10.185	5.0979	1	348440	+		19836	24490;32400	13875	13901	22387	22387					0.06404793225101457
GLGAVARDQP	10	Unmodified	_GLGAVARDQP_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|30|2|anti-sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|30|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.26593017578125	2	492.267073	982.519593	0.21205	0.00010438	-0.064867	-3.1932E-05	0.14718	7.2451E-05	492.2666524696594	37.019	0.98215	36.955	36.47	37.452	-0.063385					77	25	5	0	0	0	0.30843	1	2992	2992		108.09	14.892	1	12205000	+		19837	37598	13876	13902	22388	22388					0.027634016406636874
GLGAVARDQP	10	Unmodified	_GLGAVARDQP_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|30|2|anti-sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|30|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2644348144531	2	492.267073	982.519593	-0.23364	-0.00011501	0.48708	0.00023977	0.25344	0.00012476	492.2669179923295	37.045	0.99952	37.078	36.678	37.677	0.032269					73	25	4	0	0	0	0.55353	1	2971	2971		82.241	2.7895	1	11695000	+		19838	37598	13876	13902	22389	22389					0.027634016406636874
GLGAVILVH	9	Unmodified	_GLGAVILVH_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.26141357421875	2	439.776545	877.538538	0.56626	0.00024903	-0.1799	-7.9116E-05	0.38636	0.00016991	439.77638586282586	19.535	0.8102	19.535	19.268	20.078	0					40	16	3	0	0	0	0.024289	1	423	423		29.842	4.3914	1	207860			19839	1491	13877	13903	22390	22390					0.09486983002386751
GLGAWAPR	8	Unmodified	_GLGAWAPR_					0	0	0			REV__ENST00000550135.5_1_19:58514063-58517364:+|nuORF	REV__ENST00000550135.5_1_19:58514063-58517364:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.2893981933594	2	414.229762	826.444972	-0.30344	-0.00012569	-3.8927	-0.0016125	-4.1961	-0.0017382	414.228112125914	34.42	0.3248	34.213	34.082	34.406	-0.20696					13	7	3	0	0	0	0.027866	1	2537	2537		20.482	2.1574	1	47749	+		19840	34899	13878	13904	22391	22391					0.024806836199331883
GLGHLLRK	8	Unmodified	_GLGHLLRK_					0	0	0		ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.33087158203125	2	447.287611	892.56067	0.33907	0.00015166	0.75747	0.00033881	1.0965	0.00049047	447.28804657236026	108.51	0.13675	108.51	108.45	108.59	-0.0056458					9	6	2	0	0	0	0.027866	1	13825	13825		13.775	0.81615	1	948320			19841	17578	13879	13905	22392	22392					0.1100920747079499
GLGHLLRK	8	Unmodified	_GLGHLLRK_					0	0	0		ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	447.287611	892.56067	1.233	0.00055149	-0.18207	-8.1439E-05	1.0509	0.00047005	447.2875885284572	108.52	0.11399	108.52	108.46	108.58	0	0.059632	-0.0006327	NaN	13.775	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	803730			19842	17578	13879	13905							0.1100920747079499
GLGHLLRK	8	Unmodified	_GLGHLLRK_					0	0	0		ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	447.287611	892.56067	0.039685	1.7751E-05	0.47215	0.00021119	0.51183	0.00022894	447.2878542899621	108.51	0.15365	108.51	108.44	108.6	0.004776	0.051343	-4.7446E-05	NaN	13.775	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	898460			19843	17578	13879	13905							0.1100920747079499
GLGHLLRK	8	Unmodified	_GLGHLLRK_					0	0	0		ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	447.287611	892.56067	0.052647	2.3548E-05	1.4495	0.00064834	1.5021	0.00067189	447.28848775440406	108.52	0.11891	108.39	108.35	108.47	-0.12389	-0.067918	0.00082686	NaN	13.775	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866390			19844	17578	13879	13905							0.1100920747079499
GLGHLLRK	8	Unmodified	_GLGHLLRK_					0	0	0		ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	ENST00000607414.1_1_14:102414768-102414975:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	447.287611	892.56067	-1.2668	-0.00056662	1.3996	0.00062604	0.13286	5.9424E-05	447.28812442988965	108.5	0.11638	108.37	108.34	108.46	-0.13649	-0.092204	0.00078227	NaN	13.775	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	859940			19845	17578	13879	13905							0.1100920747079499
GLGIGVARVP	10	Unmodified	_GLGIGVARVP_					0	0	0			REV__ENST00000222374.2_1_19:44126724-44127456:-|nuORF	REV__ENST00000222374.2_1_19:44126724-44127456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7821044921875	2	469.792727	937.5709	-1.017	-0.0004778	1.43	0.00067178	0.41292	0.00019399	469.7930735354753	29.828	0.98755	29.828	29.149	30.137	0					35	24	3	0	0	0	0.03519	1	1807	1807		38.806	15.764	1	207290	+		19846	29354	13880	13906	22393	22393					0.09961770405357129
GLGIHGIGGI	10	Unmodified	_GLGIHGIGGI_					0	0	0		nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.7557678222656	2	447.263802	892.513051	0.10974	4.9085E-05	-0.20787	-9.2974E-05	-0.098127	-4.3889E-05	447.26354953368997	57.08	0.59418	56.916	56.606	57.2	-0.16431					28	16	2	0	0	0	0.03519	1	6413	6413		26.796	0	1	544610			19847	829	13881	13907	22394	22394					0.062495084799593315
GLGISTDKAY	10	Unmodified	_GLGISTDKAY_					0	0	0		nc|ENSG00000166405|Q7Z5B4-3|RIC3;nc|ENSG00000166405|Q7Z5B4-6|RIC3;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3;ENST00000530060.5_1_11:8132247-8149890:-|nuORF;ENST00000524799.5_1_11:8132247-8159930:-|nuORF	nc|ENSG00000166405|Q7Z5B4-3|RIC3	nc|ENSG00000166405|Q7Z5B4-3|RIC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3021240234375	2	512.769114	1023.52368	-0.78061	-0.00040027	-0.8221	-0.00042155	-1.6027	-0.00082182	512.7688680964741	51.516	0.31475	51.24	51.078	51.393	-0.27643					15	7	3	0	0	0	0.03519	1	5305	5305		54.776	5.3348	1	169330			19848	7553	13882	13908	22395	22395					0.012854463437065533
GLGISTDKAY	10	Unmodified	_GLGISTDKAY_					0	0	0		nc|ENSG00000166405|Q7Z5B4-3|RIC3;nc|ENSG00000166405|Q7Z5B4-6|RIC3;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3;ENST00000530060.5_1_11:8132247-8149890:-|nuORF;ENST00000524799.5_1_11:8132247-8159930:-|nuORF	nc|ENSG00000166405|Q7Z5B4-3|RIC3	nc|ENSG00000166405|Q7Z5B4-3|RIC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.769114	1023.52368	0.90496	0.00046404	-1.9241	-0.00098663	-1.0192	-0.00052259	512.7680679471537	51.289	0.31499	51.177	50.973	51.288	-0.11163	-0.0069541	-0.00047749	NaN	54.776	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162260			19849	7553	13882	13908							0.012854463437065533
GLGISTDKAY	10	Unmodified	_GLGISTDKAY_					0	0	0		nc|ENSG00000166405|Q7Z5B4-3|RIC3;nc|ENSG00000166405|Q7Z5B4-6|RIC3;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3;ENST00000530060.5_1_11:8132247-8149890:-|nuORF;ENST00000524799.5_1_11:8132247-8159930:-|nuORF	nc|ENSG00000166405|Q7Z5B4-3|RIC3	nc|ENSG00000166405|Q7Z5B4-3|RIC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.769114	1023.52368	1.0502	0.00053853	-1.0258	-0.00052599	0.024457	1.2541E-05	512.7685491880238	51.317	0.35583	51.136	50.984	51.34	-0.18071	-0.048189	0.0004438	NaN	54.776	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99863			19850	7553	13882	13908							0.012854463437065533
GLGKLKMIIA	10	Unmodified	_GLGKLKMIIA_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3179931640625	2	522.335913	1042.65727	0.2327	0.00012155	3.2641	0.001705	3.4968	0.0018265	522.3374711776946	18.223	0.29737	18.019	17.866	18.163	-0.20371					10	5	2	0	0	0	0.03519	1	285	285		10.265	6.5809	1	55319			19851	3341	13883	13909	22396	22396					0.13765013915735835
GLGKTIQAI	9	Unmodified	_GLGKTIQAI_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-5|ZRANB3;ENST00000492193.1_1_2:136111018-136262059:-|nuORF;ENSG00000138375|ENST00000357276|SMARCAL1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000138375|ENST00000357276|SMARCAL1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7795104980469	2	450.779285	899.544017	-0.13018	-5.8681E-05	0.281	0.00012667	0.15082	6.7987E-05	450.7792384440813	47.734	0.98285	47.734	47.43	48.413	0					63	29	3	0	0	0	0.247	1	4811	4811		82.75	18.543	1	2837000			19852	5232;3903;7035;37905	13884	13910	22397	22397					0.09022661794165288
GLGKTIQAI	9	Unmodified	_GLGKTIQAI_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-5|ZRANB3;ENST00000492193.1_1_2:136111018-136262059:-|nuORF;ENSG00000138375|ENST00000357276|SMARCAL1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000138375|ENST00000357276|SMARCAL1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	450.779285	899.544017	-0.66865	-0.00030141	0.80261	0.0003618	0.13397	6.0389E-05	450.77948106792104	47.629	0.87062	47.688	47.423	48.294	0.059097	-0.02615	0.0003063	NaN	82.75	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2828000			19853	5232;3903;7035;37905	13884	13910							0.09022661794165288
GLGKTLQSI	9	Unmodified	_GLGKTLQSI_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7766418457031	2	458.776742	915.538931	-0.52472	-0.00024073	0.038237	1.7542E-05	-0.48648	-0.00022319	458.77679466087784	46.602	0.72662	46.449	46.172	46.899	-0.15301					38	19	3	0	0	0	0.2101	1	4610	4610		87.696	0	1	2822000			19854	2029	13885	13911	22398	22398					0.07778357931567825
GLGKTLQTI	9	Unmodified	_GLGKTLQTI_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7841491699219	2	465.784567	929.554582	-0.1033	-4.8115E-05	-0.030249	-1.409E-05	-0.13355	-6.2205E-05	465.78445212134943	46.47	0.69227	46.47	46.199	46.892	0					55	18	4	0	0	0	0.082191	2	4619	4606;4619		116.9	0	1	2774200			19855	6323	13886	13912	22399;22400	22400					0.08698644448600135
GLGKTLQTI	9	Unmodified	_GLGKTLQTI_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.78472900390625	2	465.784567	929.554582	-0.62763	-0.00029234	0.51097	0.000238	-0.11666	-5.4338E-05	465.78468910747904	46.578	0.75994	46.425	46.098	46.858	-0.15301					63	20	4	0	0	0	0.15366	2	4598	4598;4611		98.629	0	1	3518400			19856	6323	13886	13912	22401;22402	22401					0.08698644448600135
GLGKTLQTI	9	Unmodified	_GLGKTLQTI_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.78411865234375	2	465.784567	929.554582	0.61153	0.00028484	-0.67604	-0.00031489	-0.064518	-3.0052E-05	465.78414050794953	46.449	0.66948	46.501	46.203	46.873	0.051395					55	18	4	0	0	0	0.17822	1	4537	4537		93.195	0	1	2956100			19857	6323	13886	13912	22403	22403					0.08698644448600135
GLGLAVGFRCA	11	Unmodified	_GLGLAVGFRCA_					0	0	0			REV__ENSG00000127561|ENST00000248121|SYNGR3	REV__ENSG00000127561|ENST00000248121|SYNGR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2869873046875	2	532.289494	1062.56443	-0.21462	-0.00011424	-4.3347	-0.0023073	-4.5494	-0.0024216	532.2869380245468	71.842	0.97474	71.58	71.241	72.216	-0.26199					49	22	3	0	0	0	0.49334	1	8418	8418		76.774	15.802	1	2124700	+		19858	22939	13887	13913	22404	22404					0.03565509182340065
GLGLGFAPDP	10	Unmodified	_GLGLGFAPDP_					0	0	0			REV__ENST00000472100.5_1_7:1468322-1474217:-|nuORF	REV__ENST00000472100.5_1_7:1468322-1474217:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2720031738281	2	472.247818	942.481082	-0.80286	-0.00037915	3.3687	0.0015909	2.5658	0.0012117	472.2473933885371	64.909	0.45639	64.646	64.417	64.873	-0.2626					20	11	2	0	0	0	0.03519	1	7653	7653		37.159	1.5408	1	158800	+		19859	33198	13888	13914	22405	22405					0.007540960061191981
GLGLHLLR	8	Unmodified	_GLGLHLLR_					0	0	0			REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2664794921875	2	439.782162	877.549771	-0.51613	-0.00022699	0.31357	0.0001379	-0.20256	-8.9081E-05	439.7820756984607	43.596	0.5408	43.452	43.205	43.745	-0.14471					27	14	3	0	0	0	0.027866	1	4053	4053		29.842	0	1	252890	+		19860	36508	13889	13915	22406	22406					0.10609805096510172
GLGLRSQINRI	11	Unmodified	_GLGLRSQINRI_					0	0	0		SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|51|1|anti-sense;chr12:56784133-56784853|342|14.69|0.25|5.86|+|0|TE_info:SVA_D,SVA_D_dup973,SVA,Retroposon,donor,-,56782661,56784133|None,HSD17B6|7	SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|51|1|anti-sense	SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|51|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.5821838378906	3	409.582444	1225.7255	0.34643	0.00014189	-0.35766	-0.00014649	-0.011234	-4.6014E-06	409.58224276984254	35.126	1.2087	35.126	34.785	35.994	0					84	31	4	0	0	0	1.0408	1	2673	2673		27.644	0	1	2679300			19861	324	13890	13916	22407	22407					0.12166974819956522
GLGNGRHTL	9	Unmodified	_GLGNGRHTL_					0	0	0		ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2	ENST00000561487.1_1_16:2577913-2578724:+|nuORF	ENST00000561487.1_1_16:2577913-2578724:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.30023193359375	2	462.754133	923.493713	0.5535	0.00025613	-4.0401	-0.0018696	-3.4866	-0.0016134	462.75223657234454	86.278	1.0282	86.278	85.871	86.899	0					34	23	2	0	0	0	0.024457	1	10872	10872		15.642	0	1	170530			19862	6915	13891	13917	22408	22408					0.028905521890351338
GLGPEAEGL	9	Unmodified	_GLGPEAEGL_					0	0	0		ENST00000540594.5_1_15:34439399-34502250:-|nuORF	ENST00000540594.5_1_15:34439399-34502250:-|nuORF	ENST00000540594.5_1_15:34439399-34502250:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7381896972656	2	421.71635	841.418148	-0.46609	-0.00019656	4.1284	0.001741	3.6624	0.0015445	421.71746158057744	23.446	0.12177	23.446	23.36	23.482	0					4	2	2	0	0	0	0.024541	1	918	918		8.2313	4.2461	1	10682			19863	16427	13892	13918	22409	22409					-0.008904697818934437
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.2403869628906	2	420.240327	838.466101	0.973	0.00040889	-1.1382	-0.0004783	-0.16515	-6.9404E-05	420.2398894087136	37.286	1.5533	37.286	36.613	38.166	0					116	42	6	0	0	0	0.17822	7	3029	2995;3005;3017;3029;3041;3055;3068		93.195	16.421	1	24455000			19864	8873	13893	13919	22410;22411;22412;22413;22414;22415;22416	22413					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.2405700683594	2	420.240327	838.466101	0.28841	0.0001212	-0.47341	-0.00019895	-0.18499	-7.7742E-05	420.24017999470743	37.172	1.5329	37.109	36.47	38.003	-0.063385					118	41	6	0	0	0	0.15366	7	3013	2957;2966;2977;2989;3001;3013;3028		98.629	21.312	1	23502000			19865	8873	13893	13919	22417;22418;22419;22420;22421;22422;22423	22422					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.2403259277344	2	420.240327	838.466101	0.17847	7.5E-05	-0.36996	-0.00015547	-0.19149	-8.0473E-05	420.2402232028913	37.287	1.6936	37.32	36.643	38.336	0.032269					115	45	4	0	0	0	0.2101	7	2956	2935;2945;2956;2968;2980;2992;3005		87.696	20.203	1	20402000			19866	8873	13893	13919	22424;22425;22426;22427;22428;22429;22430	22426					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.24053955078125	2	420.240327	838.466101	0.19337	8.1263E-05	-0.0055441	-2.3299E-06	0.18783	7.8933E-05	420.24034106984726	37.327	1.653	37.134	36.335	37.988	-0.193					116	43	4	0	0	0	0.32811	5	2993	2969;2981;2993;3004;3016		71.877	10.773	1	19678000			19867	8873	13893	13919	22431;22432;22433;22434;22435	22433					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.24072265625	2	420.240327	838.466101	-0.92312	-0.00038793	1.1352	0.00047704	0.21205	8.9113E-05	420.24081872229766	37.367	1.3234	37.147	36.607	37.93	-0.2195					103	34	4	0	0	0	0.28753	6	2980	2968;2980;2992;3004;3016;3029		77.318	19.836	1	18226000			19868	8873	13893	13919	22436;22437;22438;22439;22440;22441	22437					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.2406311035156	2	420.240327	838.466101	0.025647	1.0778E-05	0.13506	5.6758E-05	0.16071	6.7536E-05	420.24039506050974	37.371	1.4723	37.161	36.525	37.998	-0.2092					111	38	4	0	0	0	0.17822	4	2979	2967;2979;2991;3003		93.195	7.69	1	15941000			19869	8873	13893	13919	22442;22443;22444;22445	22443					0.040406489287988734
GLGPTFKL	8	Unmodified	_GLGPTFKL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.74993896484375	2	416.749996	831.485439	0.27807	0.00011589	-0.79822	-0.00033266	-0.52015	-0.00021677	416.74985792281075	61.361	1.1326	61.134	60.706	61.839	-0.22663					98	29	7	0	0	0	0.27053	1	7052	7052		124.59	5.0374	1	7794900			19870	8473	13894	13920	22446	22446					0.06295605219713707
GLGPTFKL	8	Unmodified	_GLGPTFKL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.7500915527344	2	416.749996	831.485439	-0.30644	-0.00012771	0.42533	0.00017726	0.11889	4.9547E-05	416.7501602329101	61.364	0.57579	61.107	60.888	61.464	-0.25725					37	13	4	0	0	0	0.44658	1	6860	6860		90.777	2.1338	1	1046700			19871	8473	13894	13920	22447	22447					0.06295605219713707
GLGPTRAAP	9	Unmodified	_GLGPTRAAP_					0	0	0			REV__ENST00000328090.9_2_10:5726882-5726975:+|nuORF	REV__ENST00000328090.9_2_10:5726882-5726975:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.240234375	2	420.240327	838.466101	0.025647	1.0778E-05	0.13506	5.6758E-05	0.16071	6.7536E-05	420.24039506050974	37.371	1.4723	37.161	36.525	37.998	-0.2092					111	38	4	0	0	0	0.4752	1	2955	2955		60.972	2.742	1	15941000	+		19872	30429	13895	13921	22448	22448					0.04040648928787505
GLGSLLELNL	10	Unmodified	_GLGSLLELNL_					0	0	0		ENST00000524486.5_1_11:803168-803522:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	ENST00000524486.5_1_11:803168-803522:-|nuORF	ENST00000524486.5_1_11:803168-803522:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8156127929688	2	514.802957	1027.59136	0.18361	9.4521E-05	1.1509	0.0005925	1.3345	0.00068702	514.8037820846168	72.151	0.30672	72.151	71.904	72.211	0					10	7	2	0	0	0	0.03519	1	8774	8774		42.396	5.237	1	189390			19873	8754	13896	13922	22449	22449					0.07866896274504143
GLGSPLLTLAG	11	Unmodified	_GLGSPLLTLAG_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7896423339844	2	499.797675	997.580796	-0.32119	-0.00016053	-0.11975	-5.985E-05	-0.44093	-0.00022038	499.7976108034954	92.49	0.97807	92.49	91.816	92.794	0					37	23	3	0	0	0	0.024738	1	11771	11771		34.173	0	1	287600	+		19874	26424	13897	13923	22450	22450					0.08190913620080664
GLGVLIDFVN	10	Unmodified	_GLGVLIDFVN_					0	0	0			REV__ENST00000526482.1_1_14:92920194-92959969:+|nuORF	REV__ENST00000526482.1_1_14:92920194-92959969:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3036499023438	2	523.797675	1045.5808	-0.50124	-0.00026255	2.2288	0.0011674	1.7275	0.00090487	523.7987413033338	89.207	0.54557	89.207	88.894	89.44	0					38	12	4	0	0	0	0.03519	1	11219	11219		26.693	0	1	710520	+		19875	34446	13898	13924	22451	22451					0.05982913620096042
GLGVSRNKLE	10	Unmodified	_GLGVSRNKLE_					0	0	0			REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3423461914062	2	536.809105	1071.60366	-0.6354	-0.00034109	0.16572	8.8958E-05	-0.46968	-0.00025213	537.3103194396652	27.243	0.42254	27.001	26.869	27.292	-0.24217					11	8	2	0	0	0	0.03519	1	1510	1510		19.104	0	1	87302	+		19876	25967	13899	13925	22452	22452					0.0707193273754001
GLGVVAISIF	10	Unmodified	_GLGVVAISIF_					0	0	0		nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.798095703125	2	488.29731	974.580068	-0.25792	-0.00012594	3.1186	0.0015228	2.8607	0.0013969	488.29882760427313	50.113	1.4518	50.194	49.397	50.849	0.080994					94	41	4	0	0	0	0.03519	1	5132	5132		12.207	0	1	14594000			19877	18284	13900	13926	22453	22453					0.09176118971049618
GLGWAQCIW	9	Unmodified	_GLGWAQCIW_					0	0	0			REV__ENST00000556726.5_1_14:91738074-91738764:-|nuORF	REV__ENST00000556726.5_1_14:91738074-91738764:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3052978515625	2	517.249837	1032.48512	-0.22777	-0.00011781	3.0111	0.0015575	2.7834	0.0014397	517.2507884171708	60.175	0.296	59.927	59.762	60.058	-0.24842					15	7	3	0	0	0	0.024535	1	6689	6689		18.324	0	1	167430	+		19878	35045	13901	13927	22454	22454					-0.02982137771800808
GLGYVLVRA	9	Unmodified	_GLGYVLVRA_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7671203613281	2	474.287277	946.560001	0.39569	0.00018767	0.82821	0.00039281	1.2239	0.00058048	474.2873812139456	55.374	0.4146	55.222	55.031	55.446	-0.15181					18	11	2	0	0	0	0.024497	1	6058	6058		28.254	6.2944	1	138720	+		19879	36945	13902	13928	22455	22455					0.08458368031097052
GLGYVLVRA	9	Unmodified	_GLGYVLVRA_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	474.287277	946.560001	-0.51607	-0.00024476	1.3843	0.00065654	0.86821	0.00041178	474.28792228851506	55.108	0.35463	55.206	55.016	55.371	0.098015	-0.0080483	0.00021944	NaN	8.2313	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116270	+		19880	36945	13902	13928							0.08458368031097052
GLHDPSPEV	9	Unmodified	_GLHDPSPEV_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.28961181640625	2	475.732532	949.45051	1.6387	0.00077959	-1.1277	-0.0005365	0.51097	0.00024309	475.7315390946498	58.913	0.4674	58.913	58.714	59.182	0					18	12	2	0	0	0	0.024506	1	6705	6705		38.806	13.356	1	134340			19881	18737	13903	13929	22456	22456					-0.02623682378907688
GLHFVVPSV	9	Unmodified	_GLHFVVPSV_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7742614746094	2	477.774003	953.533452	0.51545	0.00024627	-0.45315	-0.0002165	0.062301	2.9766E-05	477.7736660208479	69.149	1.1652	69.149	68.789	69.954	0					64	29	4	0	0	0	0.14199	2	8322	8297;8322		101.21	23.894	1	7597900			19882	1272	13904	13930	22457;22458	22458					0.05482679139765878
GLHFVVPSV	9	Unmodified	_GLHFVVPSV_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.77423095703125	2	477.774003	953.533452	0.79395	0.00037933	-0.6765	-0.00032321	0.11746	5.6117E-05	477.7736015027622	69.46	1.0599	69.167	68.86	69.92	-0.29292					64	26	4	0	0	0	0.16533	2	8311	8311;8347		96.048	31.84	1	7163800			19883	1272	13904	13930	22459;22460	22459					0.05482679139765878
GLHFVVPSV	9	Unmodified	_GLHFVVPSV_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.77423095703125	2	477.774003	953.533452	-0.25372	-0.00012122	0.23777	0.0001136	-0.01595	-7.6203E-06	477.77402803298537	69.208	1.0896	69.223	68.865	69.955	0.015129					60	27	4	0	0	0	0.16533	2	8227	8227;8262		96.048	21.793	1	7029200			19884	1272	13904	13930	22461;22462	22461					0.05482679139765878
GLHLMHII	8	Unmodified	_GLHLMHII_					0	0	0			REV__SCN7A|p.R1358H|1|0.32|ENSG00000136546|chr2:166406556-166406556|C/T|missense_variant	REV__SCN7A|p.R1358H|1|0.32|ENSG00000136546|chr2:166406556-166406556|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.72589111328125	2	467.270573	932.526593	-0.54289	-0.00025368	2.1118	0.0009868	1.5689	0.00073312	467.27141637824616	43.544	0.31622	43.307	43.174	43.49	-0.23736					10	8	2	0	0	0	0.027866	1	3995	3995		24.504	0	1	204220	+		19885	37466	13905	13931	22463	22463					0.05763042987530298
GLHPQLPLS	9	Unmodified	_GLHPQLPLS_					0	0	0		nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	nc|ENSG00000196440|Q5H9R4-2|ARMCX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2926330566406	2	481.276909	960.539266	-1.0175	-0.00048972	2.2162	0.0010666	1.1986	0.00057687	481.27789213352816	55.494	0.77306	55.592	55.294	56.067	0.098015					35	20	2	0	0	0	0.02435	1	6124	6124		42.396	0	1	928980			19886	18625	13906	13932	22464	22464					0.05741777651417124
GLHSLIFEV	9	Unmodified	_GLHSLIFEV_					0	0	0		nc|ENSG00000120729|Q9UBF9-2|MYOT;nc|ENSG00000120729|Q9UBF9|MYOT;ENSG00000120729|ENST00000239926|MYOT	nc|ENSG00000120729|Q9UBF9-2|MYOT	nc|ENSG00000120729|Q9UBF9-2|MYOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.78436279296875	2	507.784567	1013.55458	0.23321	0.00011842	-0.47251	-0.00023994	-0.23931	-0.00012152	507.78429752818664	73.015	1.1431	72.734	72.385	73.528	-0.28124					68	28	4	0	0	0	0.36105	1	8857	8857		68.485	2.6815	1	5691900			19887	3836	13907	13933	22465	22465					0.04834644448612835
GLHTAHIR	8	Unmodified	_GLHTAHIR_					0	0	0			REV__nc|ENSG00000172478|Q08AI8-3|MAB21L4	REV__nc|ENSG00000172478|Q08AI8-3|MAB21L4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2284851074219	2	452.759218	903.503883	0.54556	0.00024701	-0.76676	-0.00034716	-0.2212	-0.00010015	452.7588030592563	102.94	0.56668	102.82	102.54	103.1	-0.12723					37	13	4	0	0	0	0.027866	1	12769	12769		57.811	22.193	1	575490	+		19888	26675	13908	13934	22466	22466					0.04827159914270851
GLHVLTSAL	9	Unmodified	_GLHVLTSAL_					0	0	0			REV__CLTC-VMP1|9|fusion;REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.2427062988281	2	455.77146	909.528367	-0.56148	-0.0002559	-0.62224	-0.0002836	-1.1837	-0.0005395	455.7707654835654	38.344	0.36984	38.262	38.083	38.453	-0.082512					11	9	2	0	0	0	0.023775	1	3185	3185		68.485	0	1	43214	+		19889	19502;19500	13909	13935	22467	22467					0.06998375277123614
GLHVQRRHLPL	11	Unmodified	_GLHVQRRHLPL_					0	0	0			REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.6009521484375	3	442.60195	1324.78402	0.19098	8.4528E-05	-2.8236	-0.0012497	-2.6326	-0.0011652	442.6009574074855	102.43	0.67945	102.3	102.03	102.71	-0.1293					50	15	4	0	0	0	1.0532	1	12719	12719		24.232	5.7008	1	675520	+		19890	32575	13910	13936	22468	22468					0.1346207618507833
GLIADLNDL	9	Unmodified	_GLIADLNDL_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2594299316406	2	472.258382	942.502212	-0.14051	-6.6359E-05	0.32806	0.00015493	0.18755	8.8572E-05	472.2585344971034	73.831	0.32589	73.641	73.396	73.722	-0.19027					12	7	2	0	0	0	0.17455	1	8695	8695		94.006	6.2521	1	714490	+		19891	22736	13911	13937	22469	22469					0.028660613149895653
GLIAPLVK	8	Unmodified	_GLIAPLVK_					0	0	0			REV__ENST00000371269.7_1_1:55317199-55317424:-|nuORF	REV__ENST00000371269.7_1_1:55317199-55317424:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	405.77496337890625	2	405.776014	809.537475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.233	1	62.233	61.733	62.733	0								0	0	0	0.99677	1	7238	7238		20.482	4.8456	1		+		19892	31155	13912	13938	22470	22470					0.125087686334723
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.7687683105469	2	496.768583	991.522613	-0.066548	-3.3059E-05	0.67918	0.00033739	0.61263	0.00030433	496.7686612221672	93.093	1.3897	93.101	92.502	93.892	0.0077286					56	32	3	0	0	0	0.11848	1	11743	11743		106.42	35.037	1	773290			19893	5362	13913	13939	22471	22471					0.026512319748235313
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.768583	991.522613	0.18509	9.1948E-05	0.31447	0.00015622	0.49957	0.00024817	496.7685495167459	93.087	1.5054	93.087	92.139	93.645	0	0.036557	-0.00026215	NaN	106.42	51	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570930			19894	5362	13913	13939							0.026512319748235313
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.768583	991.522613	-0.4187	-0.00020799	0.87367	0.00043401	0.45497	0.00022601	496.76881668388216	93.086	1.4982	93.082	92.125	93.623	-0.0042038	0.031617	0.00029343	NaN	106.42	48	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526410			19895	5362	13913	13939							0.026512319748235313
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.768583	991.522613	-1.6454	-0.00081738	1.8898	0.0009388	0.24442	0.00012142	496.7691961776898	93.096	0.93707	92.956	92.329	93.266	-0.13995	-0.093808	0.001303	NaN	106.42	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162440			19896	5362	13913	13939							0.026512319748235313
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.768583	991.522613	0.060064	2.9838E-05	0.13797	6.8541E-05	0.19804	9.8379E-05	496.7683172019622	93.115	1.0305	92.993	92.423	93.453	-0.12215	-0.057083	-0.00043751	NaN	106.42	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260320			19897	5362	13913	13939							0.026512319748235313
GLIDEIYGI	9	Unmodified	_GLIDEIYGI_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.768583	991.522613	-0.13095	-6.5054E-05	0.24211	0.00012027	0.11116	5.5219E-05	496.7684996908054	93.226	1.1624	93.082	92.493	93.655	-0.1441	0.031824	-0.00033404	NaN	106.42	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295690			19898	5362	13913	13939							0.026512319748235313
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2427673339844	2	464.242732	926.470912	0.068104	3.1617E-05	0.022945	1.0652E-05	0.091048	4.2269E-05	464.242641242162	67.984	0.91611	67.984	67.644	68.56	0					62	23	4	0	0	0	0.06122	3	8143	8131;8143;8155		124.59	28.404	1	3073600			19899	10867	13914	13940	22472;22473;22474	22473					0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2425842285156	2	464.242732	926.470912	0.22904	0.00010633	-0.1808	-8.3933E-05	0.048245	2.2398E-05	464.2425588051877	68.323	0.92888	68.03	67.705	68.634	-0.29267					60	23	4	0	0	0	0.11092	1	8150	8150		108.09	14.892	1	3294600			19900	10867	13914	13940	22475	22475					0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.24298095703125	2	464.242732	926.470912	0.96212	0.00044666	-0.89153	-0.00041389	0.07059	3.2771E-05	464.2422438374254	68.076	1.0209	68.095	67.743	68.764	0.018913					68	26	4	0	0	0	0.047345	1	8058	8058		129.68	39.313	1	4324100			19901	10867	13914	13940	22476	22476					0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.242732	926.470912	-0.043514	-2.0201E-05	0.56035	0.00026014	0.51684	0.00023994	464.2430001899416	68.392	0.68953	68.13	67.897	68.586	-0.26165	0.037837	0.00084366	NaN	129.68	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484710			19902	10867	13914	13940							0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.242732	926.470912	0.42701	0.00019824	0.082585	3.834E-05	0.5096	0.00023658	464.24266656118385	68.425	0.60138	68.182	67.868	68.47	-0.24278	0.089874	0.00040006	NaN	129.68	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706780			19903	10867	13914	13940							0.004734882809088958
GLIDENPGL	9	Unmodified	_GLIDENPGL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.242732	926.470912	0.41446	0.00019241	-0.0033252	-1.5437E-06	0.41113	0.00019086	464.24262188126744	68.363	0.64546	68.132	67.835	68.48	-0.23048	0.040046	0.00032029	NaN	129.68	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804680			19904	10867	13914	13940							0.004734882809088958
GLIDFAIQL	9	Unmodified	_GLIDFAIQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.28558349609375	2	495.286943	988.559333	0.10428	5.1646E-05	-0.27726	-0.00013732	-0.17298	-8.5675E-05	495.2867259508948	101.82	1.1865	101.82	101.51	102.69	0					52	26	2	0	0	0	0.03849	3	13029	13029;13039;13050		134.81	43.691	1	1757300			19905	9358;5780	13915	13941	22477;22478;22479	22477					0.0645952859136969
GLIDFAIQL	9	Unmodified	_GLIDFAIQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.28656005859375	2	495.286943	988.559333	-0.081659	-4.0445E-05	-0.0037975	-1.8809E-06	-0.085457	-4.2326E-05	495.2868548105916	101.79	1.198	101.8	101.47	102.67	0.0073471					48	27	2	0	0	0	0.10174	3	12996	12986;12996;13008		110.12	27.879	1	1913600			19906	9358;5780	13915	13941	22480;22481;22482	22481					0.0645952859136969
GLIDFAIQL	9	Unmodified	_GLIDFAIQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2865295410156	2	495.286943	988.559333	0.28204	0.00013969	-0.45615	-0.00022592	-0.1741	-8.6231E-05	495.2866402765478	101.86	1.1379	101.85	101.58	102.72	-0.0054474					46	25	2	0	0	0	0.067814	3	12970	12958;12970;12982		122.18	39.935	1	1834700			19907	9358;5780	13915	13941	22483;22484;22485	22484					0.0645952859136969
GLIDFAIQL	9	Unmodified	_GLIDFAIQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.28662109375	2	495.286943	988.559333	0.15892	7.8712E-05	-0.017957	-8.894E-06	0.14096	6.9818E-05	495.28690744251594	101.74	1.4434	101.61	101.22	102.66	-0.13156					47	33	2	0	0	0	0.014988	2	12622	12622;12634		161.9	57.152	1	886660			19908	9358;5780	13915	13941	22486;22487	22486					0.0645952859136969
GLIDFAIQL	9	Unmodified	_GLIDFAIQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2861328125	2	495.286943	988.559333	0.24616	0.00012192	-0.10455	-5.1781E-05	0.14162	7.0141E-05	495.28686938384817	101.74	1.6039	101.61	101.11	102.72	-0.12576					58	38	2	0	0	0	0.03849	2	12640	12640;12653		134.81	35.436	1	991070			19909	9358;5780	13915	13941	22488;22489	22488					0.0645952859136969
GLIDFAIQL	9	Unmodified	_GLIDFAIQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.28668212890625	2	495.286943	988.559333	0.12638	6.2593E-05	-0.38372	-0.00019005	-0.25734	-0.00012746	495.28667119753806	101.83	0.9271	101.65	101.24	102.17	-0.17178					34	21	2	0	0	0	0.014988	3	12624	12624;12636;12648		161.9	71.528	1	1175300			19910	9358;5780	13915	13941	22490;22491;22492	22490					0.0645952859136969
GLIDGRLTI	9	Unmodified	_GLIDGRLTI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.29095458984375	2	479.290017	956.565481	0.81292	0.00038963	-0.99557	-0.00047716	-0.18264	-8.7538E-05	479.2894014788991	67.876	0.72672	67.876	67.568	68.295	0					50	18	4	0	0	0	0.094442	2	8113	8113;8126		112.41	32.96	1	3619800			19911	3679	13916	13942	22493;22494	22493					0.0854604682289164
GLIDGRLTI	9	Unmodified	_GLIDGRLTI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2903137207031	2	479.290017	956.565481	0.40501	0.00019412	-0.49261	-0.0002361	-0.087597	-4.1984E-05	479.289642858417	68.247	0.69847	67.954	67.628	68.326	-0.29267					54	17	4	0	0	0	0.053401	2	8143	8131;8143		127.46	42.546	1	4491400			19912	3679	13916	13942	22495;22496	22496					0.0854604682289164
GLIDGRLTI	9	Unmodified	_GLIDGRLTI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2902526855469	2	479.290017	956.565481	0.33547	0.00016079	-0.3709	-0.00017777	-0.035427	-1.698E-05	479.2897091766499	67.966	0.72353	67.985	67.63	68.353	0.018913					53	18	4	0	0	0	0.14181	1	8048	8048		101.25	23.935	1	3598400			19913	3679	13916	13942	22497	22497					0.0854604682289164
GLIDGRLTI	9	Unmodified	_GLIDGRLTI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.290017	956.565481	0.28387	0.00013606	-1.0565	-0.00050635	-0.77258	-0.00037029	479.28945539893084	68.187	0.44263	67.954	67.676	68.119	-0.23376	0.018043	-0.00033668	NaN	127.46	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89817			19914	3679	13916	13942							0.0854604682289164
GLIDGRLTI	9	Unmodified	_GLIDGRLTI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.290017	956.565481	0.48419	0.00023207	-0.75854	-0.00036356	-0.27435	-0.00013149	479.2895202748453	68.144	0.32287	67.909	67.75	68.073	-0.23496	-0.026514	-5.1107E-05	NaN	127.46	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97494			19915	3679	13916	13942							0.0854604682289164
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2766723632812	2	530.277106	1058.53966	-0.59153	-0.00031367	0.8421	0.00044655	0.25057	0.00013287	530.277414161755	57.739	2.372	57.739	57.148	59.52	0					154	63	4	0	0	0	0.28753	1	6493	6493		77.318	16.346	1	56702000			19916	18548	13917	13943	22498	22498					0.012731525806202626
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2779541015625	2	530.277106	1058.53966	-0.70494	-0.00037381	1.049	0.00055626	0.34407	0.00018245	530.2775091347208	57.991	2.1849	57.816	57.268	59.453	-0.1749					150	59	4	0	0	0	0.14024	4	6509	6499;6509;6532;6545		101.6	24.754	1	41030000			19917	18548	13917	13943	22499;22500;22501;22502	22500					0.012731525806202626
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2758178710938	2	530.277106	1058.53966	-0.6998	-0.00037109	0.84859	0.00044999	0.14879	7.8901E-05	530.2774321977151	57.615	2.1957	57.71	57.165	59.361	0.095306					151	59	4	0	0	0	0.15366	4	6385	6385;6392;6404;6428		98.629	27.334	1	55694000			19918	18548	13917	13943	22503;22504;22505;22506	22503					0.012731525806202626
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2772827148438	2	530.277106	1058.53966	-0.49955	-0.0002649	1.0183	0.00054	0.51878	0.0002751	530.2773461568727	57.936	0.95255	57.759	57.281	58.233	-0.17775					74	23	5	0	0	0	0.37611	1	6371	6371		67.494	11.989	1	12046000			19919	18548	13917	13943	22507	22507					0.012731525806202626
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2769775390625	2	530.277106	1058.53966	-0.441	-0.00023385	0.48154	0.00025535	0.040531	2.1493E-05	530.2771948294628	57.917	0.94466	57.727	57.148	58.092	-0.19017					72	24	5	0	0	0	0.2101	1	6357	6357		87.696	10.922	1	20667000			19920	18548	13917	13943	22508	22508					0.012731525806202626
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2763671875	2	530.277106	1058.53966	-0.11633	-6.1687E-05	0.63456	0.00033649	0.51823	0.0002748	530.277142079813	58.032	0.98711	57.799	57.237	58.224	-0.23363					70	24	5	0	0	0	0.15366	2	6366	6357;6366		98.629	10.875	1	13451000			19921	18548	13917	13943	22509;22510	22510					0.012731525806202626
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.78753662109375	2	500.787307	999.560061	-0.14205	-7.1137E-05	-0.39219	-0.0001964	-0.53424	-0.00026754	500.7870860169282	60.312	0.92614	60.312	59.88	60.807	0					72	24	6	0	0	0	0.013337	5	6919	6907;6919;6931;6943;6956		176.44	36.95	1	30795000			19922	2252	13918	13944	22511;22512;22513;22514;22515	22512					0.060263232404167866
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7870788574219	2	500.787307	999.560061	-0.60017	-0.00030056	-0.069657	-3.4883E-05	-0.66982	-0.00033544	500.78724982488666	60.505	0.8728	60.291	60	60.873	-0.21339					74	22	5	0	0	0	0.01388	5	6922	6911;6922;6934;6947;6959		180.87	42.044	1	29737000			19923	2252	13918	13944	22516;22517;22518;22519;22520	22517					0.060263232404167866
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.78741455078125	2	500.787307	999.560061	-1.6913	-0.00084698	1.1993	0.0006006	-0.49198	-0.00024638	500.78785094556656	60.183	0.90262	60.262	59.936	60.839	0.078888					73	23	6	0	0	0	0.013924	5	6830	6813;6830;6842;6854;6868		167.23	37.337	1	25956000			19924	2252	13918	13944	22521;22522;22523;22524;22525	22522					0.060263232404167866
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7868957519531	2	500.787307	999.560061	-0.96095	-0.00048123	1.1049	0.00055334	0.144	7.2113E-05	500.7876459850471	60.674	0.68243	60.421	60.092	60.774	-0.25373					43	16	4	0	0	0	0.071379	1	6753	6753		120.87	16.122	1	1742500			19925	2252	13918	13944	22526	22526					0.060263232404167866
GLIDRQVTV	9	Unmodified	_GLIDRQVTV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.79229736328125	2	500.792924	999.571294	-0.22842	-0.00011439	-0.25648	-0.00012844	-0.48489	-0.00024283	500.79268091276197	52.704	1.0133	52.704	52.391	53.404	0					68	26	4	0	0	0	0.086035	3	5666	5641;5654;5666		115.49	35.555	1	4785400			19926	4256;18250	13919	13945	22527;22528;22529	22529					0.07149145334574314
GLIDRQVTV	9	Unmodified	_GLIDRQVTV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.79241943359375	2	500.792924	999.571294	0.099649	4.9904E-05	-0.76312	-0.00038217	-0.66347	-0.00033226	500.7924817670273	52.773	1.0572	52.626	52.326	53.383	-0.14723					60	27	3	0	0	0	0.086035	3	5641	5630;5641;5655		115.49	51.287	1	6027000			19927	4256;18250	13919	13945	22530;22531;22532	22531					0.07149145334574314
GLIDRQVTV	9	Unmodified	_GLIDRQVTV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7921447753906	2	500.792924	999.571294	0.18753	9.3914E-05	-0.95639	-0.00047895	-0.76886	-0.00038504	500.7924479242337	52.525	1.767	52.617	51.894	53.661	0.091938					89	46	4	0	0	0	0.086035	3	5560	5548;5560;5581		115.49	41.239	1	8536900			19928	4256;18250	13919	13945	22533;22534;22535	22534					0.07149145334574314
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_		GLIDWNM(1)FV		GLIDWNM(130)FV	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.7677001953125	2	555.76806	1109.52157	0.67177	0.00037335	-0.55245	-0.00030703	0.11932	6.6313E-05	555.7675462572105	96.861	0.66888	96.724	96.435	97.104	-0.1367					38	14	3	0	0	0	0.057894	3	11966	11955;11966;11979		125.81	32.619	1	558240			19929	3707	13920	13946	22536;22537;22538	22537		142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_		GLIDWNM(1)FV		GLIDWNM(100)FV	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.768310546875	2	555.76806	1109.52157	0.77364	0.00042996	-1.1221	-0.0006236	-0.34842	-0.00019364	555.7674364189616	96.322	0.71294	96.199	95.771	96.484	-0.12305					51	16	4	0	0	0	0.12602	1	11933	11933		104.75	25.034	1	566470			19930	3707	13920	13946	22539	22539		142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_		GLIDWNM(1)FV		GLIDWNM(110)FV	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.768310546875	2	555.76806	1109.52157	0.89659	0.0004983	-0.80374	-0.00044669	0.092852	5.1604E-05	555.7674431702645	96.858	0.80162	96.735	96.484	97.285	-0.12314					47	17	4	0	0	0	0.11092	3	11992	11969;11981;11992		108.09	36.21	1	705630			19931	3707	13920	13946	22540;22541;22542	22542		142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_		GLIDWNM(1)FV		GLIDWNM(90)FV	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7683715820312	2	555.76806	1109.52157	-0.40215	-0.0002235	-0.26878	-0.00014938	-0.67092	-0.00037288	555.7679708560917	96.425	1.2421	96.268	95.313	96.555	-0.15646					71	28	4	0	0	0	0.19099	1	11912	11912		90.37	39.034	1	574350			19932	3707	13920	13946	22543	22543		142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_		GLIDWNM(1)FV		GLIDWNM(100)FV	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7680053710938	2	555.76806	1109.52157	-0.35388	-0.00019667	0.38991	0.0002167	0.03603	2.0025E-05	555.7681194047783	96.923	0.8495	96.762	96.506	97.356	-0.16105					43	18	3	0	0	0	0.12602	2	11972	11961;11972		104.75	30.139	1	576980			19933	3707	13920	13946	22544;22545	22545		142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_					0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.76806	1109.52157	-0.17526	-9.7402E-05	-1.2034	-0.00066883	-1.3787	-0.00076623	555.767124747355	96.57	0.56268	96.57	96.274	96.836	0	0.20286	-0.00019913	NaN	104.75	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86510			19934	3707	13920	13946				142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_					0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.76806	1109.52157	-0.081486	-4.5288E-05	-0.69719	-0.00038748	-0.77868	-0.00043277	555.7675923843457	97.029	0.57729	97.029	96.748	97.325	0	0.1657	-0.00024538	NaN	125.81	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119950			19935	3707	13920	13946				142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_					0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.76806	1109.52157	0.40157	0.00022318	-2.0038	-0.0011136	-1.6022	-0.00089047	555.7667597611619	96.478	0.43273	96.485	96.228	96.66	0.0065079	0.11718	-0.0010888	NaN	104.75	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77272			19936	3707	13920	13946				142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_					0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.76806	1109.52157	0.32031	0.00017802	-0.99779	-0.00055454	-0.67748	-0.00037652	555.7672276246766	96.861	0.5738	96.869	96.619	97.192	0.0089111	0.0063671	-0.00057951	NaN	125.81	29	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98261			19937	3707	13920	13946				142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_					0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.76806	1109.52157	1.2078	0.00067123	-2.704	-0.0015028	-1.4962	-0.00083155	555.7662374873539	96.543	0.48086	96.544	96.313	96.794	0.00028229	0.17628	-0.001867	NaN	104.75	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96469			19938	3707	13920	13946				142			-0.028813056657554625
GLIDWNMFV	9	Oxidation (M)	_GLIDWNM(Oxidation (M))FV_					0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.76806	1109.52157	1.0879	0.0006046	-2.1926	-0.0012186	-1.1048	-0.00061399	555.766848503174	97.059	0.75217	97.059	96.572	97.324	-3.8147E-05	0.1963	-0.0019076	NaN	125.81	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89965			19939	3707	13920	13946				142			-0.028813056657554625
GLIDWNMFV	9	Unmodified	_GLIDWNMFV_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.7703857421875	2	547.770603	1093.52665	0.03045	1.6679E-05	-0.85129	-0.00046631	-0.82084	-0.00044963	547.7705705275814	104.17	0.64239	104.04	103.6	104.25	-0.12561					22	11	3	0	0	0	0.17822	2	12960	12953;12960		93.195	33.077	1	209560			19940	3707	13920	13947	22546;22547	22547					-0.016370018031238942
GLIDWNMFV	9	Unmodified	_GLIDWNMFV_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MSMS	OPSCC_40_ClassI_Rep-2	5	547.7701416015625	2	547.770603	1093.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.18	1	104.05	103.55	104.55	-0.12927								0	0	0	0.39148	1	12974	12974		62.107	10.915	1				19941	3707	13920	13947	22548	22548					-0.016370018031238942
GLIDWNMFV	9	Unmodified	_GLIDWNMFV_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.7699584960938	2	547.770603	1093.52665	0.081155	4.4454E-05	-1.5492	-0.0008486	-1.468	-0.00080415	547.7703692494628	104.26	0.32635	104.09	103.94	104.26	-0.16791					17	9	3	0	0	0	0.5973	2	12962	12962;12970		52.937	13.381	1	127880			19942	3707	13920	13947	22549;22550	22549					-0.016370018031238942
GLIEIISNA	9	Unmodified	_GLIEIISNA_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480835.1_1_2:96943505-96944085:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	OPSCC_39_ClassI_Rep-3	3	465.2675476074219	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.601	1	81.625	81.125	82.125	0.023911								0	0	0	0.10825	1	10093	10093		90.601	10.888	1				19943	5711	13921	13948	22551	22551					0.05582651694669494
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8418273925781	2	506.841885	1011.66922	0.15075	7.6404E-05	-0.23953	-0.0001214	-0.088781	-4.4998E-05	506.8416771573682	65.585	0.92384	65.585	65.26	66.184	0					77	24	4	0	0	0	0.067814	1	7776	7776		122.18	28.981	1	7688800			19944	2640	13922	13949	22552	22552					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8418273925781	2	506.841885	1011.66922	-0.12807	-6.4912E-05	-0.057833	-2.9312E-05	-0.1859	-9.4224E-05	506.8417683119556	65.926	0.85106	65.653	65.33	66.181	-0.27282					74	22	4	0	0	0	0.021872	1	7795	7795		148.04	43.296	1	6317000			19945	2640	13922	13949	22553	22553					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8422546386719	2	506.841885	1011.66922	-0.01869	-9.473E-06	-0.11871	-6.0167E-05	-0.1374	-6.964E-05	506.84174000875237	65.652	0.92258	65.689	65.321	66.244	0.037384					77	24	4	0	0	0	0.03849	2	7705	7705;7723		134.81	41.615	1	6223000			19946	2640	13922	13949	22554;22555	22554					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.842041015625	2	506.841885	1011.66922	-0.15428	-7.8194E-05	0.086457	4.382E-05	-0.06782	-3.4374E-05	506.8418102978252	65.925	0.85589	65.684	65.33	66.186	-0.24145					56	20	4	0	0	0	0.2101	1	7527	7527		87.696	15.819	1	2032900			19947	2640	13922	13949	22556	22556					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.8414001464844	2	506.841885	1011.66922	-1.0623	-0.00053842	0.88317	0.00044763	-0.17913	-9.079E-05	506.842188937681	65.815	0.89753	65.602	65.296	66.194	-0.21327					56	21	4	0	0	0	0.067814	1	7531	7531		122.18	28.981	1	1606500			19948	2640	13922	13949	22557	22557					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.8419494628906	2	506.841885	1011.66922	-0.62635	-0.00031746	0.47684	0.00024168	-0.1495	-7.5774E-05	506.8419683371294	65.849	0.80932	65.598	65.312	66.121	-0.25111					52	19	4	0	0	0	0.17822	1	7518	7518		93.195	16.421	1	1832100			19949	2640	13922	13949	22558	22558					0.16384953930571555
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.8028564453125	2	514.802957	1027.59136	0.93308	0.00048035	-1.8056	-0.0009295	-0.87247	-0.00044915	514.8020602617185	59.658	1.6995	59.658	59.145	60.845	0					89	45	4	0	0	0	0.071379	6	6811	6801;6811;6823;6835;6848;6861		120.87	19.268	1	39655000			19950	4465	13923	13950	22559;22560;22561;22562;22563;22564	22560					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8025512695312	2	514.802957	1027.59136	-0.047188	-2.4292E-05	-0.86221	-0.00044387	-0.9094	-0.00046816	514.8025382842955	59.873	1.4474	59.672	59.209	60.657	-0.20016					96	38	5	0	0	0	0.071379	5	6802	6802;6814;6827;6839;6852		120.87	16.812	1	34587000			19951	4465	13923	13950	22565;22566;22567;22568;22569	22565					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.802978515625	2	514.802957	1027.59136	-0.45925	-0.00023642	-0.40193	-0.00020691	-0.86118	-0.00044334	514.8027593640126	59.552	1.0435	59.638	59.206	60.249	0.085682					80	27	5	0	0	0	0.071379	6	6716	6704;6716;6729;6741;6754;6766		120.87	19.268	1	31959000			19952	4465	13923	13950	22570;22571;22572;22573;22574;22575	22571					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8032836914062	2	514.802957	1027.59136	1.0231	0.00052669	-1.551	-0.00079844	-0.52788	-0.00027176	514.8022832126127	59.843	1.2898	59.646	59.339	60.628	-0.19742					61	32	4	0	0	0	0.041068	4	6642	6620;6630;6642;6656		132.76	10.582	1	10037000			19953	4465	13923	13950	22576;22577;22578;22579	22578					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.8027954101562	2	514.802957	1027.59136	0.49078	0.00025265	-0.92962	-0.00047857	-0.43884	-0.00022592	514.8025772776597	59.771	1.3162	59.595	59.281	60.597	-0.1761					65	33	4	0	0	0	0.071379	3	6634	6622;6634;6648		120.87	16.36	1	11349000			19954	4465	13923	13950	22580;22581;22582	22581					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MSMS	OPSCC_40_ClassI_Rep-3	6	514.8028564453125	2	514.802957	1027.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.929	1	59.681	59.181	60.181	-0.24842								0	0	0	0.036569	1	6630	6630		114.89	1.483	1				19955	4465	13923	13950	22583	22583					0.0786689627452688
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MSMS	OPSCC_40_ClassI_Rep-3	6	514.8032836914062	2	514.802957	1027.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.011	1	59.762	59.262	60.262	-0.24842								0	0	0	0.1192	1	6643	6643		88.177	15.298	1				19956	4465	13923	13950	22584	22584					0.0786689627452688
GLIFHPLH	8	Unmodified	_GLIFHPLH_					0	0	0			REV__ENST00000512876.5_1_5:138629414-138653336:+|nuORF	REV__ENST00000512876.5_1_5:138629414-138653336:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.77490234375	2	467.268887	932.523222	-0.043286	-2.0226E-05	-4.0392	-0.0018874	-4.0825	-0.0019076	467.2668140782733	19.824	0.76725	19.705	19.446	20.213	-0.11872					29	15	3	0	0	0	0.027866	1	425	425		16.705	0	1	333700	+		19957	34144	13924	13951	22585	22585					0.05426116205183007
GLIGGLEAQL	10	Unmodified	_GLIGGLEAQL_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.78131103515625	2	485.782025	969.549496	0.079585	3.8661E-05	-1.6577	-0.00080529	-1.5781	-0.00076663	485.78111493176146	80.858	1.1984	80.713	80.368	81.566	-0.146					61	28	3	0	0	0	0.24462	2	9709	9697;9709		115.49	25.124	1	4370900		+	19958	524	13925	13952	22586;22587	22587					0.06350340586004677
GLIGQLDEV	9	Unmodified	_GLIGQLDEV_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2579650878906	2	472.258382	942.502212	-0.14051	-6.6359E-05	0.32806	0.00015493	0.18755	8.8572E-05	472.2585344971034	73.831	0.32589	73.641	73.396	73.722	-0.19027					12	7	2	0	0	0	0.086035	1	8683	8683		115.49	10.747	1	714490			19959	7516	13926	13953	22588	22588					0.028660613149895653
GLIGQLDEV	9	Unmodified	_GLIGQLDEV_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.258382	942.502212	0.47066	0.00022227	-0.14861	-7.0182E-05	0.32205	0.00015209	472.25810119923153	74.009	0.81996	73.738	73.577	74.397	-0.27126	0.063711	-0.0001204	NaN	115.49	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642440			19960	7516	13926	13953							0.028660613149895653
GLIGQLDEV	9	Unmodified	_GLIGQLDEV_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.258382	942.502212	0.034738	1.6405E-05	0.026634	1.2578E-05	0.061372	2.8983E-05	472.25812364044475	73.642	1.0785	73.651	73.402	74.481	0.0096512	-0.022664	4.5124E-05	NaN	115.49	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618450			19961	7516	13926	13953							0.028660613149895653
GLIGQLDEV	9	Unmodified	_GLIGQLDEV_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.258382	942.502212	0.06302	2.9762E-05	-0.22178	-0.00010474	-0.15876	-7.4978E-05	472.25824688559715	73.931	0.4128	73.666	73.445	73.858	-0.26479	-0.007587	-0.00018951	NaN	115.49	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	552730			19962	7516	13926	13953							0.028660613149895653
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.8033447265625	2	477.80276	953.590967	-0.4955	-0.00023675	1.257	0.0006006	0.76151	0.00036385	477.8032080832783	91.154	0.6637	91.154	90.719	91.383	0					28	15	2	0	0	0	0.36026	2	11519	11519;11530		102.77	19.486	1	2700300			19963	5360	13927	13954	22589;22590	22589					0.11231521345325746
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.80401611328125	2	477.80276	953.590967	0.017587	8.4031E-06	0.72276	0.00034533	0.74034	0.00035374	477.80294009837934	91.15	0.87701	91.138	90.827	91.704	-0.012383					51	20	4	0	0	0	0.36026	3	11489	11489;11501;11513		102.77	33.712	1	2721900			19964	5360	13927	13954	22591;22592;22593	22591					0.11231521345325746
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8040466308594	2	477.80276	953.590967	0.45518	0.00021749	0.38806	0.00018542	0.84324	0.0004029	477.80276552768555	91.165	0.66103	91.177	90.783	91.444	0.011276					46	15	4	0	0	0	0.070459	2	11454	11454;11466		143.02	41.107	1	2744700			19965	5360	13927	13954	22594;22595	22594					0.11231521345325746
GLIGVPEKKV	10	Unmodified	_GLIGVPEKKV_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.837158203125	2	520.329142	1038.64373	0.53391	0.00027781	0.27198	0.00014152	0.80589	0.00041933	520.3294514037375	70.026	0.72508	69.733	69.275	70	-0.29291					42	17	3	0	0	0	0.03519	1	8441	8441		19.997	0	1	7754200			19966	6747	13928	13955	22596	22596					0.12595479408128085
GLIILLFYINF	11	Unmodified	_GLIILLFYINF_					0	0	0			REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|49|1|anti-sense	REV__SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|49|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.60174560546875	3	442.600442	1324.7795	0.36102	0.00015979	1.1865	0.00052517	1.5476	0.00068495	442.60085921913367	102.42	0.6427	102.41	102.15	102.79	-0.0054474					25	14	2	0	0	0	1.0655	1	13064	13064		20.837	0.80668	1	570440	+		19967	37630	13929	13956	22597	22597					0.1300975419894712
GLILEKPV	8	Unmodified	_GLILEKPV_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.78021240234375	2	434.778754	867.542954	-0.77622	-0.00033748	4.009	0.001743	3.2328	0.0014056	434.780341833039	38.941	1.099	38.776	38.554	39.653	-0.16458					92	29	4	0	0	0	1.0574	1	3271	3271		26.796	0	1	3470400			19968	7902	13930	13957	22598	22598					0.10388447425293634
GLILIFCLPFI	11	Unmodified	_GLILIFCLPFI_					0	0	0		ENST00000466094.5_1_7:107220736-107227893:+|nuORF;ENST00000486326.5_1_7:107220736-107234551:+|nuORF;ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENST00000466094.5_1_7:107220736-107227893:+|nuORF	ENST00000466094.5_1_7:107220736-107227893:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	416.90167236328125	3	416.919006	1247.73519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.112	1	15.965	15.465	16.465	-0.14753								0	0	0	1.6884	1	47	47		6.6596	0	1				19969	1570	13931	13958	22599	22599					0.12123026781091539
GLILLPQP	8	Unmodified	_GLILLPQP_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7748718261719	2	425.773471	849.53239	-0.21096	-8.9821E-05	3.6783	0.0015661	3.4673	0.0014763	425.77492564602755	43.279	1.886	43.042	42.719	44.605	-0.23737					116	50	5	0	0	0	1.0133	1	3931	3931		35.201	1.6851	1	10379000			19970	38027	13932	13959	22600	22600					0.10160464770854105
GLILPTEL	8	Unmodified	_GLILPTEL_					0	0	0		nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9Y4C0-3|NRXN3;nc|ENSG00000021645|Q9Y4C0-4|NRXN3;ENSG00000021645|ENST00000335750|NRXN3	nc|ENSG00000021645|Q9Y4C0|NRXN3	nc|ENSG00000021645|Q9Y4C0|NRXN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2618408203125	2	428.262936	854.51132	-0.84173	-0.00036048	-1.8293	-0.00078343	-2.671	-0.0011439	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0574	1	11348	11348		26.796	1.3459	1	86056000			19971	18038	13933	13960	22601	22601					0.0782445467133357
GLILQGYES	9	Unmodified	_GLILQGYES_					0	0	0		ENSG00000112739|ENST00000337659|PRPF4B	ENSG00000112739|ENST00000337659|PRPF4B	ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25823974609375	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.92825	1	13395	13395		30.504	1.3541	1	6674100			19972	3236	13934	13961	22602	22602					0.012100613149982564
GLILSLSY	8	Unmodified	_GLILSLSY_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.2562561035156	2	433.255111	864.49567	0.5502	0.00023838	-0.69107	-0.00029941	-0.14087	-6.1032E-05	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	1.0017	1	13217	13217		37.028	7.1869	1	237570000	+		19973	22224	13935	13962	22603	22603					0.05800168154280527
GLIMTAEVVL	10	Unmodified	_GLIMTAEVVL_					0	0	0			REV__ENST00000547276.5_1_12:54676362-54677673:+|nuORF	REV__ENST00000547276.5_1_12:54676362-54677673:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0781	1	10704	10704		35.618	1.4457	1	14210000	+		19974	34864	13936	13963	22604	22604					0.06840724545213561
GLIQVPLKV	9	Unmodified	_GLIQVPLKV_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.8208312988281	2	483.820953	965.627353	0.29545	0.00014295	-0.023915	-1.1571E-05	0.27154	0.00013138	483.82087468146835	69.954	0.38886	69.954	69.71	70.098	0					21	10	3	0	0	0	0.15029	1	8444	8444		99.375	33.572	1	856650			19975	2989	13937	13964	22605	22605					0.1431639824204467
GLIQVPLKV	9	Unmodified	_GLIQVPLKV_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.8215026855469	2	483.820953	965.627353	-0.51582	-0.00024957	0.86057	0.00041636	0.34475	0.0001668	483.82126988062504	70.084	0.38032	70.097	69.791	70.171	0.012421					18	9	3	0	0	0	0.18915	1	8378	8378		90.777	27.47	1	1429000			19976	2989	13937	13964	22606	22606					0.1431639824204467
GLIQVPLKV	9	Unmodified	_GLIQVPLKV_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.820953	965.627353	0.7009	0.00033911	-0.56072	-0.00027129	0.14017	6.7819E-05	483.8204463754222	70.273	0.42351	69.98	69.714	70.137	-0.29291	-0.029894	-0.00081835	NaN	99.375	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1030000			19977	2989	13937	13964							0.1431639824204467
GLISSLNEI	9	Unmodified	_GLISSLNEI_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1;ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2663269042969	2	473.266207	944.517862	0.97416	0.00046103	-0.7262	-0.00034369	0.24795	0.00011735	473.2657680963821	77.231	2.4838	77.231	76.84	79.323	0					103	59	3	0	0	0	0.0089939	2	9538	9538;9550		237.81	56.008	1	5051000			19978	8488	13938	13965	22607;22608	22607					0.04338347832049294
GLISSLNEI	9	Unmodified	_GLISSLNEI_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1;ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2663269042969	2	473.266207	944.517862	0.51427	0.00024338	-0.3393	-0.00016058	0.17497	8.2806E-05	473.26592109372467	77.398	1.1668	77.187	76.83	77.997	-0.21087					70	27	3	0	0	0	0.017512	2	9532	9532;9545		205.58	53.111	1	4633200			19979	8488	13938	13965	22609;22610	22609					0.04338347832049294
GLISSLNEI	9	Unmodified	_GLISSLNEI_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1;ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2662048339844	2	473.266207	944.517862	0.34821	0.00016479	-0.14869	-7.0368E-05	0.19952	9.4426E-05	473.26598750094917	77.2	1.1277	77.213	76.859	77.987	0.013504					67	26	4	0	0	0	0.017512	2	9461	9461;9475		205.58	53.111	1	4843000			19980	8488	13938	13965	22611;22612	22611					0.04338347832049294
GLISSLNEI	9	Unmodified	_GLISSLNEI_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1;ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.266207	944.517862	0.54332	0.00025713	-0.88763	-0.00042008	-0.34431	-0.00016295	473.2660095608994	77.398	1.0978	77.136	76.344	77.442	-0.26202	-0.03925	-0.00041064	NaN	237.81	34	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401030			19981	8488	13938	13965							0.04338347832049294
GLISSLNEI	9	Unmodified	_GLISSLNEI_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1;ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.266207	944.517862	0.90234	0.00042705	-1.3133	-0.00062153	-0.41094	-0.00019448	473.2656395661161	77.351	0.65474	77.108	76.75	77.405	-0.24232	-0.066685	-0.00081353	NaN	237.81	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329050			19982	8488	13938	13965							0.04338347832049294
GLIVPKTCV	9	Unmodified	_GLIVPKTCV_					0	0	0			REV__nc|ENSG00000129197|Q86UA6-9|RPAIN	REV__nc|ENSG00000129197|Q86UA6-9|RPAIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.28045654296875	2	465.278063	928.541574	0.28089	0.00013069	4.0449	0.001882	4.3258	0.0020127	465.27981139819894	88.02	1.2618	87.888	87.477	88.739	-0.13254					76	30	4	0	0	0	0.98697	1	10764	10764		23.042	1.0826	1	1552700	+		19983	36649	13939	13966	22613	22613					0.07444490064881393
GLIVQDHS	8	Unmodified	_GLIVQDHS_					0	0	0		nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7799377441406	2	434.729792	867.445031	0.51774	0.00022508	-0.6661	-0.00028957	-0.14836	-6.4496E-05	434.7295757161908	36.704	0.44692	36.704	36.44	36.887	0					13	11	2	0	0	0	0.027866	1	2893	2893		40.573	13.777	1	100520			19984	5976	13940	13967	22614	22614					0.006006388292917109
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.2740478515625	2	449.273835	896.533118	-0.084628	-3.8021E-05	0.039474	1.7735E-05	-0.045154	-2.0287E-05	449.27378529470496	56.825	1.2748	56.825	56.07	57.345	0					114	35	4	0	0	0	0.012965	2	6343	6343;6369		172.03	14.823	1	14120000			19985	7717	13941	13968	22615;22616	22615					0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.2740478515625	2	449.273835	896.533118	-0.038526	-1.7309E-05	-0.04396	-1.975E-05	-0.082486	-3.7059E-05	449.27375771357504	56.993	1.5204	56.829	55.95	57.471	-0.16432					125	41	4	0	0	0	0.015925	3	6343	6320;6343;6381		157.21	18.383	1	12477000			19986	7717	13941	13968	22617;22618;22619	22618					0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.27386474609375	2	449.273835	896.533118	-0.21244	-9.5445E-05	0.16087	7.2276E-05	-0.05157	-2.3169E-05	449.2738669914797	56.702	1.36	56.8	55.999	57.359	0.097893					117	37	4	0	0	0	0.028071	1	6277	6277		143.11	13.424	1	14918000			19987	7717	13941	13968	22620	22620					0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	449.273835	896.533118	-0.080622	-3.6221E-05	0.35672	0.00016027	0.2761	0.00012405	449.273864034416	56.852	1.3275	56.685	56.041	57.369	-0.1672	-0.10161	0.00027815	NaN	172.03	73	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1531200			19988	7717	13941	13968							0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	449.273835	896.533118	0.26721	0.00012005	-0.024448	-1.0984E-05	0.24276	0.00010907	449.2736802997399	56.961	1.1149	56.759	56.132	57.247	-0.20209	-0.027656	-6.4352E-05	NaN	172.03	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1634800			19989	7717	13941	13968							0.08071259419898524
GLKGDRGAIGF	11	Unmodified	_GLKGDRGAIGF_					0	0	0		nc|ENSG00000038945|P21757-2|MSR1;nc|ENSG00000038945|P21757-3|MSR1;ENSG00000038945|ENST00000262101|MSR1;ENST00000519060.6_1_8:15998591-16021712:-|nuORF	nc|ENSG00000038945|P21757-2|MSR1	nc|ENSG00000038945|P21757-2|MSR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.805908203125	2	545.803823	1089.59309	-0.23169	-0.00012646	3.5235	0.0019231	3.2918	0.0017967	545.8057522238269	72.928	1.7259	72.663	71.881	73.607	-0.26479					117	41	5	0	0	0	0.82076	1	8579	8579		56.434	1.6575	1	2467500			19990	1056	13942	13969	22621	22621					0.051879500831546466
GLKGRVFEV	9	Unmodified	_GLKGRVFEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.79815673828125	2	502.798009	1003.58147	0.096738	4.8639E-05	-0.76675	-0.00038552	-0.67001	-0.00033688	502.7975289538491	42.584	1.4394	42.584	42.255	43.695	0					87	39	4	0	0	0	0.5973	2	3923	3923;3933		52.937	13.485	1	4426000			19991	5814	13943	13970	22622;22623	22622					0.07981753059800667
GLKGRVFEV	9	Unmodified	_GLKGRVFEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7975769042969	2	502.798009	1003.58147	-0.10938	-5.4996E-05	-0.51887	-0.00026089	-0.62825	-0.00031589	502.7976304839543	42.828	1.4392	42.689	42.312	43.751	-0.13929					103	39	4	0	0	0	0.72494	2	3934	3934;3944		44.377	10.205	1	4163900			19992	5814	13943	13970	22624;22625	22624					0.07981753059800667
GLKGRVFEV	9	Unmodified	_GLKGRVFEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.798095703125	2	502.798009	1003.58147	0.24568	0.00012353	-0.90828	-0.00045668	-0.6626	-0.00033315	502.7974271658914	42.735	1.311	42.761	42.459	43.77	0.026012					88	35	4	0	0	0	0.45795	1	3893	3893		62.107	12.666	1	4291400			19993	5814	13943	13970	22626	22626					0.07981753059800667
GLKKKEVHV	9	Unmodified	_GLKKKEVHV_					0	0	0		ENSG00000113966|ENST00000463745|ARL6;nc|ENSG00000113966|Q9H0F7-2|ARL6	ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.3265380859375	2	519.326934	1036.63931	-0.57762	-0.00029997	0.29898	0.00015527	-0.27863	-0.0001447	519.3269022023321	51.909	0.51012	51.762	51.511	52.021	-0.14735					31	14	3	0	0	0	0.80003	1	5513	5513		39.253	1.4413	1	4015400			19994	3337	13944	13971	22627	22627					0.12246014985225884
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.75836181640625	2	427.758352	853.502152	-0.044589	-1.9073E-05	0.091156	3.8993E-05	0.046567	1.992E-05	427.758417543511	41.134	1.838	41.134	40.551	42.389	0					99	52	3	0	0	0	0.088511	5	3692	3645;3668;3680;3692;3719		114.59	13.374	1	21513000			19995	3916	13945	13972	22628;22629;22630;22631;22632	22631					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.7586669921875	2	427.758352	853.502152	0.2042	8.7347E-05	-0.15936	-6.8168E-05	0.044835	1.9179E-05	427.75831388810724	41.274	1.8482	41.151	40.547	42.395	-0.12317					97	52	3	0	0	0	0.14199	4	3662	3651;3662;3686;3724		101.21	24.365	1	20883000			19996	3916	13945	13972	22633;22634;22635;22636	22634					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.7586364746094	2	427.758352	853.502152	0.31048	0.00013281	-0.29805	-0.00012749	0.012435	5.3191E-06	427.7582642343093	41.307	1.761	41.33	40.663	42.424	0.023006					97	50	3	0	0	0	0.088511	6	3659	3612;3624;3635;3647;3659;3671		114.59	20.579	1	20598000			19997	3916	13945	13972	22637;22638;22639;22640;22641;22642	22641					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.758056640625	2	427.758352	853.502152	0.06996	2.9926E-05	-0.089386	-3.8235E-05	-0.019425	-8.3094E-06	427.7582931903384	41.226	1.5359	41.09	40.488	42.024	-0.13553					95	40	4	0	0	0	0.088511	3	3640	3606;3628;3640		114.59	25.943	1	10095000			19998	3916	13945	13972	22643;22644;22645	22645					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.7582092285156	2	427.758352	853.502152	0.014503	6.2037E-06	-0.0059436	-2.5424E-06	0.0085592	3.6613E-06	427.758352713995	41.442	1.7356	41.214	40.581	42.316	-0.2278					96	45	3	0	0	0	0.20304	6	3645	3613;3624;3633;3645;3657;3670		88.643	11.796	1	9305500			19999	3916	13945	13972	22646;22647;22648;22649;22650;22651	22649					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.7582702636719	2	427.758352	853.502152	-0.20028	-8.5672E-05	0.11178	4.7815E-05	-0.088499	-3.7856E-05	427.75838374021447	41.473	1.5917	41.243	40.624	42.216	-0.23029					89	42	3	0	0	0	0.10076	4	3651	3618;3628;3639;3651		110.34	33.491	1	9164000			20000	3916	13945	13972	22652;22653;22654;22655	22655					0.06954106105649771
GLKQLNGEP	9	Unmodified	_GLKQLNGEP_					0	0	0		ENST00000341807.8_1_8:139601498-139734429:-|nuORF	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7925720214844	2	478.263999	954.513445	0.21505	0.00010285	4.2628	0.0020388	4.4779	0.0021416	478.2661114016336	50.762	0.33302	50.485	50.407	50.74	-0.27643					11	8	2	0	0	0	0.02435	1	5197	5197		42.396	25.923	1	106550			20001	12500	13946	13973	22656	22656					0.034368834091424105
GLKQLNGEP	9	Unmodified	_GLKQLNGEP_					0	0	0		ENST00000341807.8_1_8:139601498-139734429:-|nuORF	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	ENST00000341807.8_1_8:139601498-139734429:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.263999	954.513445	0.42587	0.00020368	3.9815	0.0019042	4.4074	0.0021079	478.2654699186725	50.685	0.25869	50.504	50.426	50.685	-0.18071	0.0095196	-0.00012485	NaN	42.396	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105820			20002	12500	13946	13973							0.034368834091424105
GLKRLAKSD	9	Unmodified	_GLKRLAKSD_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3006591796875	2	494.300916	986.587279	0.003029	1.4972E-06	-0.62374	-0.00030831	-0.62071	-0.00030682	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	0.96906	1	12345	12345		26.693	3.6504	1	42897000			20003	7717	13947	13974	22657	22657					0.09344851571461277
GLKSAPPVL	9	Unmodified	_GLKSAPPVL_					0	0	0		ENST00000421201.1_1_2:45878724-45879071:+|nuORF	ENST00000421201.1_1_2:45878724-45879071:+|nuORF	ENST00000421201.1_1_2:45878724-45879071:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.25897216796875	2	441.276378	880.538203	-0.30988	-0.00013674	1.2794	0.00056455	0.96949	0.00042781	441.27640605246205	23.271	0.57662	23.21	22.981	23.557	-0.060862					19	13	2	0	0	0	0.024294	1	928	928		55.504	13.108	1	47947			20004	13994	13948	13975	22658	22658					0.09315563282518724
GLKTILQCA	9	Unmodified	_GLKTILQCA_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7728576660156	2	473.773145	945.531738	0.38238	0.00018116	4.4654	0.0021156	4.8478	0.0022967	473.7780080070681	23.205	1.9601	23.205	21.819	23.78	0					143	43	6	0	0	0	0.83071	2	926	869;926		37.159	5.2042	1	9113200			20005	5222	13949	13976	22659;22660	22660					0.05679302059490965
GLLAAQRTD	9	Unmodified	_GLLAAQRTD_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2821960449219	2	472.761623	943.508694	0.34112	0.00016127	4.162	0.0019676	4.5031	0.0021289	472.7634501860488	50.471	0.63203	50.365	50.049	50.681	-0.10558					34	16	3	0	0	0	0.024405	1	5162	5162		14.865	0	1	1355800			20006	5011	13950	13977	22661	22661					0.03467999266365496
GLLAPLTAI	9	Unmodified	_GLLAPLTAI_					0	0	0			REV__ENST00000472157.1_1_1:46806507-46807258:+|nuORF	REV__ENST00000472157.1_1_1:46806507-46807258:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7786865234375	2	434.778754	867.542954	0.15534	6.7538E-05	3.0454	0.0013241	3.2007	0.0013916	434.77996518621967	36.241	1.8835	36.025	35.43	37.314	-0.21661					124	49	3	0	0	0	0.88411	1	2871	2871		33.516	9.3128	1	8069600	+		20007	33199	13951	13978	22662	22662					0.10388447425270897
GLLAPLTAI	9	Unmodified	_GLLAPLTAI_					0	0	0			REV__ENST00000472157.1_1_1:46806507-46807258:+|nuORF	REV__ENST00000472157.1_1_1:46806507-46807258:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7776184082031	2	434.778754	867.542954	1.4087	0.00061247	1.711	0.00074391	3.1197	0.0013564	434.779355277664	36.149	1.9951	35.951	35.288	37.284	-0.19829					165	52	6	0	0	0	0.88411	1	2854	2854		33.516	1.5607	1	8518400	+		20008	33199	13951	13978	22663	22663					0.10388447425270897
GLLARHHRW	9	Unmodified	_GLLARHHRW_					0	0	0			REV__ENST00000589367.5_1_17:33464890-33466847:-|nuORF	REV__ENST00000589367.5_1_17:33464890-33466847:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.3204956054688	2	573.325591	1144.63663	0.17561	0.00010068	-2.9109	-0.0016689	-2.7353	-0.0015682	573.32394098064	107.15	0.61134	107.15	106.86	107.47	0					28	15	2	0	0	0	0.97516	1	13737	13737		25.45	1.2474	1	179510	+		20009	35675	13952	13979	22664	22664					0.0700960437093272
GLLDAVTYL	9	Unmodified	_GLLDAVTYL_					0	0	0		ENST00000600170.1_1_19:48607843-48608721:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7712097167969	2	482.771126	963.527698	-0.089514	-4.3215E-05	0.52068	0.00025137	0.43116	0.00020815	482.77109662965046	95.842	0.83726	95.842	95.519	96.356	0					44	19	4	0	0	0	0.62163	1	12204	12204		51.335	3.4199	1	1053200			20010	17497	13953	13980	22665	22665					0.04447535837425676
GLLDAVTYL	9	Unmodified	_GLLDAVTYL_					0	0	0		ENST00000600170.1_1_19:48607843-48608721:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	482.7708740234375	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.698	1	95.701	95.201	96.201	0.0033798								0	0	0	0.15858	1	12157	12157		79.451	26.1	1				20011	17497	13953	13980	22666	22666					0.04447535837425676
GLLDAVTYL	9	Unmodified	_GLLDAVTYL_					0	0	0		ENST00000600170.1_1_19:48607843-48608721:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	482.7707824707031	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.741	1	95.604	95.104	96.104	-0.13689								0	0	0	0.40817	1	11812	11812		60.972	22.166	1				20012	17497	13953	13980	22667	22667					0.04447535837425676
GLLDAVTYL	9	Unmodified	_GLLDAVTYL_					0	0	0		ENST00000600170.1_1_19:48607843-48608721:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	482.7713317871094	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.82	1	95.683	95.183	96.183	-0.13689								0	0	0	0.49654	1	11823	11823		53.351	10.955	1				20013	17497	13953	13980	22668	22668					0.04447535837425676
GLLDAVTYL	9	Unmodified	_GLLDAVTYL_					0	0	0		ENST00000600170.1_1_19:48607843-48608721:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.77105712890625	2	482.771126	963.527698	0.6276	0.00030299	-0.4081	-0.00019702	0.2195	0.00010597	482.77070121874584	95.79	0.88801	95.668	95.422	96.31	-0.12251					40	20	3	0	0	0	0.27161	2	11838	11838;11848		79.451	33.499	1	1178600			20014	17497	13953	13980	22669;22670	22669					0.04447535837425676
GLLDAVTYL	9	Unmodified	_GLLDAVTYL_					0	0	0		ENST00000600170.1_1_19:48607843-48608721:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	ENST00000600170.1_1_19:48607843-48608721:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.771240234375	2	482.771126	963.527698	-0.050672	-2.4463E-05	0.22155	0.00010696	0.17088	8.2496E-05	482.7709949324258	95.925	0.97936	95.768	95.4	96.379	-0.15646					45	22	4	0	0	0	0.40179	3	11827	11815;11827;11838		65.803	12.452	1	1296100			20015	17497	13953	13980	22671;22672;22673	22672					0.04447535837425676
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.3079223632812	2	515.30821	1028.60187	0.019469	1.0032E-05	0.11613	5.9842E-05	0.1356	6.9874E-05	515.3081045234673	87.65	1.1026	87.65	87.067	88.17	0					60	24	4	0	0	0	0.091713	2	11070	11070;11081		113.41	36.637	1	1184500			20016	2338	13954	13981	22674;22675	22674					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	OPSCC_39_ClassI_Rep-1	1	515.3084716796875	2	515.30821	1028.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.322	1	87.322	86.822	87.822	0								0	0	0	0.1093	1	10984	10984		90.37	39.177	1				20017	2338	13954	13981	22676	22676					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	OPSCC_39_ClassI_Rep-1	1	515.3087158203125	2	515.30821	1028.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.42	1	87.42	86.92	87.92	0								0	0	0	0.3606	1	10998	10998		64.207	2.0999	1				20018	2338	13954	13981	22677	22677					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3076171875	2	515.30821	1028.60187	0.32605	0.00016801	-0.34292	-0.00017671	-0.016873	-8.6947E-06	515.3078097428174	87.588	1.2261	87.552	86.983	88.209	-0.035362					76	25	4	0	0	0	0.14024	1	11035	11035		101.6	32.814	1	1044800			20019	2338	13954	13981	22678	22678					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	OPSCC_39_ClassI_Rep-2	2	515.3088989257812	2	515.30821	1028.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.243	1	87.208	86.708	87.708	-0.035355								0	0	0	0.24781	1	10939	10939		71.877	13.096	1				20020	2338	13954	13981	22679	22679					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	OPSCC_39_ClassI_Rep-2	2	515.3084716796875	2	515.30821	1028.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.315	1	87.28	86.78	87.78	-0.035355								0	0	0	0.059705	1	10949	10949		104.75	49.97	1				20021	2338	13954	13981	22680	22680					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3084716796875	2	515.30821	1028.60187	0.37565	0.00019358	-0.39138	-0.00020168	-0.015728	-8.1049E-06	515.3078653292357	87.383	1.0616	87.404	87.051	88.113	0.021263					90	25	4	0	0	0	0.19099	2	10908	10908;10921		90.37	31.588	1	1372100			20022	2338	13954	13981	22681;22682	22681					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3081665039062	2	515.30821	1028.60187	-0.19027	-9.8047E-05	0.41762	0.0002152	0.22735	0.00011716	515.3083218188692	87.269	0.91544	87.09	86.741	87.656	-0.17875					57	21	4	0	0	0	0.033448	4	10599	10589;10599;10610;10623		138.83	64.851	1	2375900			20023	2338	13954	13981	22683;22684;22685;22686	22684					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3084716796875	2	515.30821	1028.60187	0.57127	0.00029438	-0.37151	-0.00019144	0.19976	0.00010294	515.3079232040648	87.209	0.88172	87.073	86.761	87.642	-0.13613					54	20	4	0	0	0	0.091713	3	10612	10601;10612;10626		113.41	41.534	1	2306900			20024	2338	13954	13981	22687;22688;22689	22688					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.30810546875	2	515.30821	1028.60187	0.036786	1.8956E-05	0.013447	6.9296E-06	0.050233	2.5886E-05	515.3081007228373	87.238	0.8813	87.1	86.746	87.627	-0.13734					62	20	4	0	0	0	0.043667	3	10604	10581;10592;10604		131.03	56.776	1	2270000			20025	2338	13954	13981	22690;22691;22692	22692					0.08870923719587154
GLLDRGPLVSN	11	Unmodified	_GLLDRGPLVSN_					0	0	0			REV__MERTK|p.E960Rfs*39|1|0.13|ENSG00000153208|chr2:112028738-112028738|G/-|frameshift_variant	REV__MERTK|p.E960Rfs*39|1|0.13|ENSG00000153208|chr2:112028738-112028738|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8218994140625	2	570.822212	1139.62987	-0.72362	-0.00041306	-0.091169	-5.2042E-05	-0.81479	-0.0004651	570.8222005781987	51.853	1.6926	51.853	51.431	53.124	0					140	45	6	0	0	0	0.849	1	5573	5573		54.722	8.7501	1	15201000	+		20026	36372	13955	13982	22693	22693					0.06564201909031908
GLLDRIMQL	9	Oxidation (M)	_GLLDRIM(Oxidation (M))QL_		GLLDRIM(1)QL		GLLDRIM(110)QL	0	0	1		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.8021850585938	2	537.802434	1073.59032	-0.98346	-0.00052891	0.7416	0.00039884	-0.24186	-0.00013007	537.8025699322934	73.067	0.81345	73.067	72.74	73.553	0					42	20	3	0	0	0	0.1158	1	8916	8916		107.01	30.233	1	1801500			20027	3520	13956	13983	22694	22694		136			0.056463586339759786
GLLDRIMQL	9	Oxidation (M)	_GLLDRIM(Oxidation (M))QL_		GLLDRIM(1)QL		GLLDRIM(85)QL	0	0	1		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.8023071289062	2	537.802434	1073.59032	-0.63176	-0.00033976	0.48496	0.00026081	-0.1468	-7.8949E-05	537.8025242056681	73.42	1.0607	73.149	72.516	73.577	-0.27126					51	26	3	0	0	0	0.22902	1	8920	8920		85.161	13.865	1	2395400			20028	3520	13956	13983	22695	22695		136			0.056463586339759786
GLLDRIMQL	9	Oxidation (M)	_GLLDRIM(Oxidation (M))QL_					0	0	1		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.802434	1073.59032	-0.75236	-0.00040462	0.54073	0.0002908	-0.21163	-0.00011382	537.8026067234358	73.066	0.7833	73.076	72.735	73.519	0.0096512	-0.021521	-4.3319E-05	NaN	107.01	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1777600			20029	3520	13956	13983				136			0.056463586339759786
GLLDSILSV	9	Unmodified	_GLLDSILSV_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;HEATR5A|p.L808Ifs*29|1|0.47|ENSG00000129493|chr14:31350708-31350709|-/A|frameshift_variant;ENST00000549185.5_3_14:31803609-31872202:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MSMS	OPSCC_40_ClassI_Rep-2	5	458.7709045410156	2	458.771126	915.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.33	1	102.2	101.7	102.7	-0.12666								0	0	0	0.018056	1	12723	12723		133.81	51.508	1				20030	4352	13957	13984	22696	22696					0.06655535837433035
GLLDSILSV	9	Unmodified	_GLLDSILSV_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;HEATR5A|p.L808Ifs*29|1|0.47|ENSG00000129493|chr14:31350708-31350709|-/A|frameshift_variant;ENST00000549185.5_3_14:31803609-31872202:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MSMS	OPSCC_40_ClassI_Rep-2	5	458.7709655761719	2	458.771126	915.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.44	1	102.31	101.81	102.81	-0.12666								0	0	0	0.071952	1	12738	12738		99.375	14.015	1				20031	4352	13957	13984	22697	22697					0.06655535837433035
GLLDSILSV	9	Unmodified	_GLLDSILSV_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;HEATR5A|p.L808Ifs*29|1|0.47|ENSG00000129493|chr14:31350708-31350709|-/A|frameshift_variant;ENST00000549185.5_3_14:31803609-31872202:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.77099609375	2	458.771126	915.527698	0.32127	0.00014739	2.5828	0.0011849	2.9041	0.0013323	458.77087785634956	102.48	0.58797	102.31	102.05	102.64	-0.17178					27	13	3	0	0	0	0.06122	3	12726	12704;12713;12726		124.59	50.62	1	910700			20032	4352	13957	13984	22698;22699;22700	22700					0.06655535837433035
GLLDTVTYL	9	Unmodified	_GLLDTVTYL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.7760009765625	2	497.776408	993.538263	-1.4272	-0.00071043	0.57978	0.0002886	-0.84743	-0.00042183	497.77664555079565	91.309	1.0641	91.16	90.853	91.917	-0.1487					65	24	5	0	0	0	0.016838	3	11187	11177;11187;11198		152.63	51.422	1	2651900			20033	7880	13958	13985	22701;22702;22703	22702					0.04123518491860523
GLLDTVTYL	9	Unmodified	_GLLDTVTYL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.7762756347656	2	497.776408	993.538263	-0.46897	-0.00023344	-0.17123	-8.5233E-05	-0.6402	-0.00031868	497.7762347214439	91.308	1.0638	91.184	90.914	91.978	-0.12341					64	24	4	0	0	0	0.028181	4	11220	11197;11208;11220;11233		143.02	41.808	1	2450500			20034	7880	13958	13985	22704;22705;22706;22707	22706					0.04123518491860523
GLLDTVTYL	9	Unmodified	_GLLDTVTYL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7760009765625	2	497.776408	993.538263	0.04127	2.0543E-05	-0.83201	-0.00041415	-0.79074	-0.00039361	497.77591452098596	91.392	1.0669	91.253	90.943	92.01	-0.13942					69	24	4	0	0	0	0.021668	4	11192	11181;11192;11204;11217		148.21	41.808	1	2411200			20035	7880	13958	13985	22708;22709;22710;22711	22709					0.04123518491860523
GLLDTVTYL	9	Unmodified	_GLLDTVTYL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.776408	993.538263	-0.81653	-0.00040645	3.4606	0.0017226	2.6441	0.0013162	497.77630561330267	91.301	0.97272	91.301	91.051	92.024	0	0.037071	0.0035138	NaN	152.63	40	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276620			20036	7880	13958	13985							0.04123518491860523
GLLDTVTYL	9	Unmodified	_GLLDTVTYL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.776408	993.538263	-0.35356	-0.00017599	3.4916	0.0017381	3.1381	0.0015621	497.7761474782036	91.356	0.84499	91.344	91.075	91.92	-0.012383	0.079385	0.0035446	NaN	152.63	43	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275520			20037	7880	13958	13985							0.04123518491860523
GLLDTVTYL	9	Unmodified	_GLLDTVTYL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.776408	993.538263	0.4787	0.00023829	1.3186	0.00065637	1.7973	0.00089466	497.77560259136214	91.333	0.76436	91.344	91.155	91.919	0.011276	0.079497	0.0013812	NaN	152.63	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364580			20038	7880	13958	13985							0.04123518491860523
GLLEINETL	9	Unmodified	_GLLEINETL_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2793273925781	2	501.279315	1000.54408	-0.38826	-0.00019463	0.53446	0.00026792	0.14621	7.329E-05	501.27939127977925	80.559	0.9752	80.559	80.163	81.138	0					44	23	3	0	0	0	0.64897	1	10019	10019		49.536	8.7579	1	696710			20039	4982	13959	13986	22712	22712					0.04382617003534506
GLLEINETL	9	Unmodified	_GLLEINETL_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.279315	1000.54408	-1.0015	-0.00050201	1.2412	0.00062219	0.23974	0.00012018	501.2797769703558	80.73	0.89554	80.578	80.259	81.155	-0.15168	0.079734	0.00063845	NaN	49.536	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748250			20040	4982	13959	13986							0.04382617003534506
GLLEINETL	9	Unmodified	_GLLEINETL_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.279315	1000.54408	-0.76524	-0.0003836	1.0138	0.00050819	0.24855	0.00012459	501.2795989144793	80.543	1.1401	80.564	80.146	81.286	0.021439	0.06613	0.00041047	NaN	49.536	41	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668140			20041	4982	13959	13986							0.04382617003534506
GLLEINETL	9	Unmodified	_GLLEINETL_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.279315	1000.54408	0.13911	6.9735E-05	-0.55912	-0.00028028	-0.42001	-0.00021054	501.2790143491223	80.66	0.68429	80.422	80.123	80.808	-0.23784	-0.076173	-0.0011665	NaN	49.536	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202000			20042	4982	13959	13986							0.04382617003534506
GLLEINETL	9	Unmodified	_GLLEINETL_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.279315	1000.54408	0.22834	0.00011446	-0.76291	-0.00038243	-0.53457	-0.00026797	501.2790532887335	80.669	0.69566	80.463	80.092	80.787	-0.20633	-0.035182	-0.0013708	NaN	49.536	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280560			20043	4982	13959	13986							0.04382617003534506
GLLEINETL	9	Unmodified	_GLLEINETL_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.279315	1000.54408	-0.37042	-0.00018568	0.10665	5.346E-05	-0.26377	-0.00013222	501.2793934340583	80.549	0.82062	80.403	80.076	80.897	-0.146	-0.095147	-0.000499	NaN	49.536	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244080			20044	4982	13959	13986							0.04382617003534506
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7789306640625	2	465.778951	929.543348	-1.1078	-0.00051601	1.0819	0.00050391	-0.02597	-1.2097E-05	465.7793497654637	91.618	1.0736	91.618	91.299	92.372	0					61	25	4	0	0	0	0.034181	3	11595	11595;11606;11619		138.24	50.488	1	2506800			20045	854	13960	13987	22713;22714;22715	22713					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7790222167969	2	465.778951	929.543348	-0.21478	-0.00010004	0.27927	0.00013008	0.06449	3.0038E-05	465.7789407605486	91.654	1.1093	91.642	91.28	92.389	-0.012383					67	26	4	0	0	0	0.06122	4	11565	11565;11577;11590;11603		124.59	45.845	1	2652000			20046	854	13960	13987	22716;22717;22718;22719	22716					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.779052734375	2	465.778951	929.543348	1.1233	0.0005232	-1.1132	-0.00051849	0.010112	4.7098E-06	465.7783192846985	91.671	1.1044	91.681	91.359	92.463	0.009407					69	26	4	0	0	0	0.039744	4	11530	11522;11530;11542;11556		133.81	59.838	1	2603700			20047	854	13960	13987	22720;22721;22722;22723	22721					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7789306640625	2	465.778951	929.543348	-1.3217	-0.00061563	1.3583	0.00063268	0.036617	1.7055E-05	465.77945082490413	91.605	1.3856	91.457	91.097	92.483	-0.1487					76	32	4	0	0	0	0.16468	4	11228	11219;11228;11240;11252		96.19	32.657	1	2245600			20048	854	13960	13987	22724;22725;22726;22727	22725					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.77899169921875	2	465.778951	929.543348	-0.30399	-0.00014159	0.25722	0.00011981	-0.046767	-2.1783E-05	465.77896218906596	91.632	1.3845	91.509	91.201	92.586	-0.12341					87	32	4	0	0	0	0.096521	5	11249	11237;11249;11260;11273;11287		111.65	32.197	1	2061800			20049	854	13960	13987	22728;22729;22730;22731;22732	22729					0.07575822354488082
GLLEIVTSV	9	Unmodified	_GLLEIVTSV_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7790832519531	2	465.778951	929.543348	0.069879	3.2548E-05	-0.10686	-4.9775E-05	-0.036985	-1.7227E-05	465.7787863236272	91.676	1.2661	91.537	91.231	92.497	-0.13941					81	29	4	0	0	0	0.072054	3	11227	11227;11239;11251		120.62	44.781	1	2112400			20050	854	13960	13987	22733;22734;22735	22733					0.07575822354488082
GLLENELKL	9	Unmodified	_GLLENELKL_					0	0	0		nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.80419921875	2	514.802957	1027.59136	-0.51771	-0.00026652	1.715	0.0008829	1.1973	0.00061639	514.8025748587941	68.823	1.3546	68.823	68.56	69.915	0					86	34	3	0	0	0	0.03666	2	8258	8258;8274		136.27	26.148	1	4150400			20051	1451	13961	13988	22736;22737	22736					0.0786689627452688
GLLENELKL	9	Unmodified	_GLLENELKL_					0	0	0		nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8043823242188	2	514.802957	1027.59136	0.2812	0.00014476	0.77356	0.00039823	1.0548	0.00054299	514.8021864761686	69.138	1.3265	68.846	68.634	69.961	-0.29269					72	33	4	0	0	0	0.1158	2	8270	8270;8282		107.01	13.864	1	3975900			20052	1451	13961	13988	22738;22739	22738					0.0786689627452688
GLLENELKL	9	Unmodified	_GLLENELKL_					0	0	0		nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	nc|ENSG00000071282|Q9NZU5-2|LMCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.8037719726562	2	514.802957	1027.59136	-0.57199	-0.00029446	1.8532	0.00095403	1.2812	0.00065957	514.8026178045237	68.903	1.3128	68.919	68.683	69.995	0.015129					54	33	2	0	0	0	0.062622	2	8193	8193;8203		124.08	22.479	1	3680600			20053	1451	13961	13988	22740;22741	22740					0.0786689627452688
GLLENIRQL	9	Unmodified	_GLLENIRQL_					0	0	0		ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2393798828125	2	528.314023	1054.61349	-0.52013	-0.00027479	0.12593	6.6532E-05	-0.3942	-0.00020826	528.3140697762966	67.548	0.74016	67.548	67.285	68.026	0					35	18	2	0	0	0	0.018452	1	8068	8068		134.81	30.064	1	3685900			20054	4524	13962	13989	22742	22742					0.08837120742941806
GLLENIRQL	9	Unmodified	_GLLENIRQL_					0	0	0		ENST00000487055.1_1_5:132036305-132039285:-|nuORF;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2392578125	2	528.314023	1054.61349	-0.18256	-9.6447E-05	-0.19251	-0.00010171	-0.37507	-0.00019815	528.313911597894	67.939	0.78966	67.651	67.347	68.136	-0.28834					35	19	2	0	0	0	0.014583	1	8089	8089		171.38	49.209	1	3795400			20055	4524	13962	13989	22743	22743					0.08837120742941806
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8212890625	2	528.824224	1055.63389	-0.46333	-0.00024502	-0.033598	-1.7767E-05	-0.49693	-0.00026279	528.8240994147764	55.097	1.2512	54.947	54.641	55.892	-0.15036					98	34	4	0	0	0	0.17845	1	6033	6033		93.143	10.903	1	4785600			20056	3480	13963	13990	22744	22744					0.10830291402771763
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.824224	1055.63389	-0.67245	-0.00035561	0.65064	0.00034407	-0.021812	-1.1535E-05	528.824554801652	54.922	0.58992	54.776	54.533	55.123	-0.14609	-0.058715	0.0005765	NaN	93.143	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605900			20057	3480	13963	13990							0.10830291402771763
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.824224	1055.63389	-0.41222	-0.00021799	0.34001	0.00017981	-0.072208	-3.8185E-05	528.8243834045841	55.004	0.53494	54.773	54.53	55.065	-0.23087	-0.061624	0.00024797	NaN	93.143	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858040			20058	3480	13963	13990							0.10830291402771763
GLLERVKEL	9	Unmodified	_GLLERVKEL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.824224	1055.63389	0.57385	0.00030346	-0.64126	-0.00033912	-0.067419	-3.5653E-05	528.8238320604518	54.958	0.65147	54.752	54.395	55.047	-0.20613	-0.083014	-0.00078988	NaN	93.143	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692770			20059	3480	13963	13990							0.10830291402771763
GLLFLPIEL	9	Unmodified	_GLLFLPIEL_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.8158874511719	2	507.815336	1013.61612	0.10536	5.3503E-05	0.35352	0.00017952	0.45888	0.00023303	507.81538695748867	103.96	1.2849	103.96	103.44	104.73	-0.0032196					76	31	4	0	0	0	0.4855	1	13277	13277		60.294	0	1	1138000	+		20060	31722	13964	13991	22745	22745					0.1098557614790252
GLLFSTGKL	9	Unmodified	_GLLFSTGKL_					0	0	0			REV__ENSG00000174567|ENST00000308302|GOLT1A	REV__ENSG00000174567|ENST00000308302|GOLT1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2799072265625	2	468.28166	934.548768	0.10123	4.7402E-05	-3.1777	-0.001488	-3.0764	-0.0014406	468.280036751479	93.853	1.9652	93.859	93.349	95.314	0.0059814					69	46	3	0	0	0	0.20967	1	11852	11852		87.754	5.4493	1	1309700	+		20061	26876	13965	13992	22746	22746					0.07887545936955576
GLLGGRSVVL	10	Unmodified	_GLLGGRSVVL_					0	0	0			REV__ENSG00000137486|ENST00000420843|ARRB1	REV__ENSG00000137486|ENST00000420843|ARRB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.80584716796875	2	485.805834	969.597115	-1.2571	-0.00061069	0.93095	0.00045226	-0.32611	-0.00015843	485.8061720813172	34.337	0.67546	34.387	34.047	34.723	0.050255					51	16	4	0	0	0	1.0393	1	2509	2509		40.778	1.972	1	3636300	+		20062	23758	13966	13993	22747	22747					0.11110039576851705
GLLGLIPVS	9	Unmodified	_GLLGLIPVS_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7796630859375	2	434.778754	867.542954	0.064442	2.8018E-05	3.0928	0.0013447	3.1572	0.0013727	434.7799380163852	46.595	1.8193	46.499	45.887	47.706	-0.096649					172	49	5	0	0	0	0.80658	2	4532	4532;4543		38.806	5.2906	1	5911100			20063	10872	13967	13994	22748;22749	22748					0.10388447425282266
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.24871826171875	2	436.247818	870.481082	1.0519	0.0004589	-0.90954	-0.00039678	0.14238	6.2114E-05	436.2473630647008	70.844	1.3123	70.844	70.483	71.795	0					91	32	5	0	0	0	0.014013	5	8542	8542;8552;8564;8577;8591		214.25	84.564	1	12072000			20064	6815	13968	13995	22750;22751;22752;22753;22754	22750					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.2489929199219	2	436.247818	870.481082	1.0875	0.00047441	-1.0769	-0.0004698	0.010569	4.6107E-06	436.2473439661375	71.18	1.4371	70.892	70.546	71.983	-0.28858					85	36	4	0	0	0	0.014013	5	8552	8552;8563;8575;8588;8601		197.6	89.512	1	14234000			20065	6815	13968	13995	22755;22756;22757;22758;22759	22755					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.2481689453125	2	436.247818	870.481082	0.36576	0.00015956	-0.27592	-0.00012037	0.089833	3.919E-05	436.24765965031753	70.946	1.2591	70.957	70.507	71.766	0.010735					86	31	4	0	0	0	0.013995	6	8504	8472;8480;8492;8504;8517;8532		197.6	73.718	1	12776000			20066	6815	13968	13995	22760;22761;22762;22763;22764;22765	22763					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.2481994628906	2	436.247818	870.481082	0.13882	6.0559E-05	0.33824	0.00014756	0.47706	0.00020811	436.2478560852399	71.198	0.97664	70.926	70.614	71.591	-0.27185					54	22	4	0	0	0	0.01452	4	8307	8286;8295;8307;8320		197.6	78.002	1	2924000			20067	6815	13968	13995	22766;22767;22768;22769	22768					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.2482604980469	2	436.247818	870.481082	0.028106	1.2261E-05	0.38517	0.00016803	0.41328	0.00018029	436.2478720198306	71.15	0.76038	70.892	70.607	71.368	-0.25713					56	17	4	0	0	0	0.013995	4	8309	8289;8297;8309;8321		197.6	74.441	1	3688800			20068	6815	13968	13995	22770;22771;22772;22773	22772					0.04066096006135922
GLLGNVAEV	9	Unmodified	_GLLGNVAEV_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.2479553222656	2	436.247818	870.481082	1.0487	0.00045751	-0.59912	-0.00026137	0.44961	0.00019614	436.247462972066	71.02	0.88786	70.806	70.563	71.451	-0.21425					49	20	4	0	0	0	0.013995	4	8278	8266;8278;8290;8305		214.25	76.004	1	3789500			20069	6815	13968	13995	22774;22775;22776;22777	22775					0.04066096006135922
GLLGPLDEPV	10	Unmodified	_GLLGPLDEPV_					0	0	0		ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2664794921875	2	505.281857	1008.54916	-0.7935	-0.00040094	-0.41359	-0.00020898	-1.2071	-0.00060992	505.2815520036922	45.023	0.47571	44.812	44.474	44.95	-0.21109					18	11	2	0	0	0	0.03519	1	4243	4243		37.159	0	1	219050			20070	934	13969	13996	22778	22778					0.04522920866145341
GLLGQEGLVEI	11	Unmodified	_GLLGQEGLVEI_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.3187255859375	2	564.318971	1126.62339	0.29953	0.00016903	-0.53074	-0.00029951	-0.23122	-0.00013048	564.3185825822115	86.106	0.8968	86.106	85.708	86.605	0					55	20	4	0	0	0	0.00051858	1	10812	10812		152.06	56.246	1	915450			20071	8829	13970	13997	22779	22779					0.0651426395766066
GLLGQEGLVEI	11	Unmodified	_GLLGQEGLVEI_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.31884765625	2	564.318971	1126.62339	-0.37578	-0.00021206	0.21279	0.00012008	-0.16299	-9.198E-05	564.3189479549251	86.107	0.77254	86.062	85.737	86.51	-0.045097					50	17	4	0	0	0	0.026238	1	10775	10775		128.6	63.137	1	815110			20072	8829	13970	13997	22780	22780					0.0651426395766066
GLLGQEGLVEI	11	Unmodified	_GLLGQEGLVEI_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.3186645507812	2	564.318971	1126.62339	-1.4395	-0.00081236	1.1228	0.00063363	-0.31671	-0.00017872	564.3194577796953	86.054	0.8123	86.078	85.737	86.55	0.023666					48	18	4	0	0	0	0.0017728	2	10729	10729;10741		150.36	43.354	1	889390			20073	8829	13970	13997	22781;22782	22781					0.0651426395766066
GLLGQEGLVEI	11	Unmodified	_GLLGQEGLVEI_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.318971	1126.62339	0.17863	0.0001008	0.44285	0.00024991	0.62148	0.00035071	564.3186650732015	86.122	0.69443	85.935	85.56	86.254	-0.18695	-0.062356	0.00037896	NaN	152.06	44	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273660			20074	8829	13970	13997							0.0651426395766066
GLLGQEGLVEI	11	Unmodified	_GLLGQEGLVEI_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.318971	1126.62339	0.17356	9.7945E-05	-0.57591	-0.00032499	-0.40234	-0.00022705	564.3186478161484	86.041	0.69349	85.904	85.619	86.312	-0.13734	-0.093735	-0.00077085	NaN	152.06	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252510			20075	8829	13970	13997							0.0651426395766066
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2881164550781	2	457.289485	912.564418	0.44168	0.00020197	-1.111	-0.00050803	-0.66929	-0.00030606	457.2890456844276	93.866	3.011	93.866	93.303	96.314	0					211	71	5	0	0	0	0.013995	15	11985	11900;11912;11924;11936;11948;11960;11972;11985;11997;12010;12022;12036;12047;12059;12095		214.25	30.352	1	43644000			20076	7775	13971	13998	22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797	22790					0.10463832454001931
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.28717041015625	2	457.289485	912.564418	-0.22865	-0.00010456	-0.3974	-0.00018173	-0.62605	-0.00028629	457.28936126555624	93.729	2.7706	93.725	93.326	96.097	-0.0041962					198	65	5	0	0	0	0.013094	16	11944	11859;11871;11883;11895;11907;11920;11932;11944;11956;11968;11982;11995;12006;12025;12036;12049		201.49	40.391	1	34837000			20077	7775	13971	13998	22798;22799;22800;22801;22802;22803;22804;22805;22806;22807;22808;22809;22810;22811;22812;22813	22805					0.10463832454001931
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2899475097656	2	457.289485	912.564418	-0.26484	-0.00012111	-0.37238	-0.00017029	-0.63722	-0.00029139	457.2893790551548	93.866	2.8096	93.872	93.349	96.158	0.0059891					218	66	5	0	0	0	0.013094	16	11952	11822;11831;11842;11854;11866;11878;11891;11903;11915;11927;11940;11952;11965;11977;11988;12002		214.25	30.352	1	42141000			20078	7775	13971	13998	22814;22815;22816;22817;22818;22819;22820;22821;22822;22823;22824;22825;22826;22827;22828;22829	22825					0.10463832454001931
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.28936767578125	2	457.289485	912.564418	-0.95553	-0.00043695	0.44156	0.00020192	-0.51397	-0.00023504	457.2896839889636	93.732	2.0171	93.592	93.179	95.196	-0.13995					82	46	2	0	0	0	0.013995	6	11515	11506;11515;11527;11539;11552;11565		197.6	29.775	1	11367000			20079	7775	13971	13998	22830;22831;22832;22833;22834;22835	22831					0.10463832454001931
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.28948974609375	2	457.289485	912.564418	0.18471	8.4466E-05	-0.70728	-0.00032343	-0.52257	-0.00023896	457.28914544615617	93.685	2.1004	93.563	93.191	95.291	-0.12215					133	48	5	0	0	0	0.014013	6	11579	11521;11529;11541;11553;11565;11579		214.25	30.352	1	11627000			20080	7775	13971	13998	22836;22837;22838;22839;22840;22841	22841					0.10463832454001931
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2900695800781	2	457.289485	912.564418	0.0079391	3.6304E-06	-0.52594	-0.00024051	-0.518	-0.00023688	457.2892357338084	93.777	1.799	93.63	93.26	95.059	-0.14771					76	41	2	0	0	0	0.013995	7	11506	11506;11514;11526;11538;11550;11564;11578		214.25	30.352	1	12576000			20081	7775	13971	13998	22842;22843;22844;22845;22846;22847;22848	22842					0.10463832454001931
GLLGVAFAAL	10	Unmodified	_GLLGVAFAAL_					0	0	0			REV__ENSG00000170128|ENST00000304244|GPR25	REV__ENSG00000170128|ENST00000304244|GPR25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.2839050292969	2	466.284203	930.553853	0.95712	0.00044629	-0.78234	-0.00036479	0.17478	8.1496E-05	466.2837428172178	102.34	0.61717	102.33	102.02	102.63	-0.0054398					32	13	3	0	0	0	0.59161	1	13044	13044		77.944	1.1697	1	298960	+		20082	26437	13972	13999	22849	22849					0.08579849799559724
GLLGYLHFV	9	Unmodified	_GLLGYLHFV_					0	0	0		ENSG00000100564|ENST00000216452|PIGH	ENSG00000100564|ENST00000216452|PIGH	ENSG00000100564|ENST00000216452|PIGH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7851867675781	2	509.789653	1017.56475	0.62418	0.0003182	-0.47603	-0.00024267	0.14815	7.5525E-05	509.7893106621733	83.746	1.4434	83.534	83.264	84.708	-0.21159					66	33	3	0	0	0	0.14584	2	10108	10108;10121		100.36	48.061	1	1057600			20083	2216	13973	14000	22850;22851	22850					0.056672521738505566
GLLGYLHFV	9	Unmodified	_GLLGYLHFV_					0	0	0		ENSG00000100564|ENST00000216452|PIGH	ENSG00000100564|ENST00000216452|PIGH	ENSG00000100564|ENST00000216452|PIGH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.78350830078125	2	509.789653	1017.56475	0.1584	8.0751E-05	-0.10772	-5.4912E-05	0.050684	2.5838E-05	509.7893993468814	83.661	1.0243	83.522	83.298	84.322	-0.13861					55	23	3	0	0	0	0.22343	1	10107	10107		85.909	21.702	1	747940			20084	2216	13973	14000	22852	22852					0.056672521738505566
GLLHHCCFY	9	Unmodified	_GLLHHCCFY_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7880249023438	2	546.741322	1091.46809	-0.81629	-0.0004463	0.80321	0.00043915	-0.013079	-7.1508E-06	546.7413051772869	29.646	0.71558	29.474	29.199	29.915	-0.17258					39	16	4	0	0	0	0.024541	1	1824	1824		14.664	0.52697	1	364580			20085	4530	13974	14001	22853	22853					-0.07398381649250041
GLLHLYLLW	9	Unmodified	_GLLHLYLLW_					0	0	0		ENST00000359314.5_1_6:47522472-47541850:+|nuORF	ENST00000359314.5_1_6:47522472-47541850:+|nuORF	ENST00000359314.5_1_6:47522472-47541850:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7216186523438	2	564.334227	1126.6539	0.0010778	6.0823E-07	2.6169	0.0014768	2.618	0.0014774	564.3362654788847	49.438	0.41917	49.256	49	49.42	-0.18178					13	10	2	0	0	0	0.024475	1	4971	4971		21.702	10.191	1	310980			20086	12734	13975	14002	22854	22854					0.09564087133367138
GLLICVRFT	9	Unmodified	_GLLICVRFT_					0	0	0		ENST00000377304.6_1_10:18940314-18940518:-|nuORF	ENST00000377304.6_1_10:18940314-18940518:-|nuORF	ENST00000377304.6_1_10:18940314-18940518:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.74835205078125	2	511.296788	1020.57902	-0.35477	-0.00018139	-3.5742	-0.0018275	-3.929	-0.0020089	511.2947714485356	32.589	1.342	32.432	31.861	33.203	-0.15772					75	32	4	0	0	0	0.024506	1	2177	2177		30.504	7.4612	1	980140			20087	13203	13976	14003	22855	22855					0.06955581330498717
GLLICVRFT	9	Unmodified	_GLLICVRFT_					0	0	0		ENST00000377304.6_1_10:18940314-18940518:-|nuORF	ENST00000377304.6_1_10:18940314-18940518:-|nuORF	ENST00000377304.6_1_10:18940314-18940518:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.296788	1020.57902	-0.12338	-6.3085E-05	-3.757	-0.0019209	-3.8803	-0.001984	511.2945930805434	32.625	1.3163	32.388	31.91	33.227	-0.23666	-0.067946	-0.00012054	NaN	30.504	68	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863090			20088	13203	13976	14003							0.06955581330498717
GLLILGIPD	9	Unmodified	_GLLILGIPD_					0	0	0			REV__ENST00000490921.5_1_1:226549163-226553858:-|nuORF	REV__ENST00000490921.5_1_1:226549163-226553858:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.7712097167969	2	455.784036	909.553519	-0.46965	-0.00021406	0.63468	0.00028928	0.16503	7.5216E-05	455.7841596059418	73.443	0.27336	73.178	73.058	73.331	-0.26479					9	6	2	0	0	0	0.024418	1	8653	8653		37.028	8.7742	1	36097	+		20089	24284	13977	14004	22856	22856					0.09512430079701062
GLLKKINSV	9	Unmodified	_GLLKKINSV_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3155212402344	2	486.316035	970.617516	-0.055045	-2.6769E-05	-0.12329	-5.9958E-05	-0.17833	-8.6727E-05	486.3158701734117	39.373	0.72966	39.373	39.041	39.771	0					64	20	4	0	0	0	0.047345	2	3368	3368;3380		129.68	38.906	1	5682500			20090	4536	13978	14005	22857;22858	22857					0.13103210236658924
GLLKKINSV	9	Unmodified	_GLLKKINSV_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.31561279296875	2	486.316035	970.617516	-0.93293	-0.0004537	0.81349	0.00039562	-0.11944	-5.8084E-05	486.31633510493674	39.375	0.82265	39.276	38.983	39.806	-0.098751					66	22	4	0	0	0	0.06122	2	3369	3369;3382		124.59	30.588	1	5441800			20091	4536	13978	14005	22859;22860	22859					0.13103210236658924
GLLKKINSV	9	Unmodified	_GLLKKINSV_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.31561279296875	2	486.316035	970.617516	-1.2491	-0.00060745	1.1363	0.00055261	-0.11277	-5.4841E-05	486.3164631769285	39.63	0.77715	39.653	39.349	40.126	0.023727					64	21	4	0	0	0	0.028071	2	3355	3355;3373		143.11	49.1	1	4992700			20092	4536	13978	14005	22861;22862	22861					0.13103210236658924
GLLKLTLRT	9	Unmodified	_GLLKLTLRT_					0	0	0			REV__ENST00000397683.5_1_21:47737253-47737958:-|nuORF	REV__ENST00000397683.5_1_21:47737253-47737958:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.8382873535156	2	507.837134	1013.65972	0.36239	0.00018404	-0.60266	-0.00030605	-0.24027	-0.00012202	507.83687292930745	17.252	0.29872	17.109	16.977	17.276	-0.14278					9	6	2	0	0	0	0.94809	1	140	140		29.15	1.2673	1	35703	+		20093	25308	13979	14006	22863	22863					0.15343185645053836
GLLKSAPLL	9	Unmodified	_GLLKSAPLL_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2823791503906	2	456.299853	910.585153	-0.10594	-4.834E-05	2.9534	0.0013476	2.8475	0.0012993	456.30111290284907	34.774	1.5805	34.774	34.515	36.096	0					97	41	4	0	0	0	0.024323	1	2621	2621		35.618	0	1	1014700			20094	3255	13980	14007	22864	22864					0.1262842283365444
GLLKSLPKP	9	Unmodified	_GLLKSLPKP_					0	0	0			REV__ENST00000426186.1_3_2:87121966-87144635:+|nuORF;REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.77679443359375	2	476.813128	951.611703	0.45712	0.00021796	0.74162	0.00035361	1.1987	0.00057157	476.81275163702276	68.5	0.70606	68.519	68.198	68.904	0.018913					48	18	4	0	0	0	0.024506	1	8183	8183		30.504	16.728	1	840670	+		20095	24886;32268	13981	14008	22865	22865					0.13396111725000992
GLLKVPVP	8	Unmodified	_GLLKVPVP_					0	0	0		ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.7744445800781	2	411.776014	821.537475	0.067888	2.7955E-05	-2.8652	-0.0011798	-2.7973	-0.0011519	411.77454345775624	108.55	0.13847	108.43	108.35	108.49	-0.12389					13	7	2	0	0	0	1.0574	1	13434	13434		14.664	5.1935	1	1403300			20096	6907	13982	14009	22866	22866					0.11956768633467618
GLLLGAPLAGP	11	Unmodified	_GLLLGAPLAGP_					0	0	0		ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.25177001953125	2	489.80276	977.590967	-1.0206	-0.00049991	0.86669	0.00042451	-0.15394	-7.5401E-05	489.803068828172	65.343	0.40042	65.07	64.863	65.263	-0.27282					15	10	2	0	0	0	0.02474	1	7681	7681		31.955	16.319	1	155690			20097	8906	13983	14010	22867	22867					0.1012752134532775
GLLLHPFKDLV	11	Unmodified	_GLLLHPFKDLV_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.9209899902344	3	417.920174	1250.73869	0.34167	0.00014279	0.78267	0.00032709	1.1243	0.00046989	417.9203773329022	45.976	1.8413	45.976	45.41	47.252	0					156	51	4	0	0	0	1.0233	1	4493	4493		31.634	0.56612	1	3380800			20098	3311	13984	14011	22868	22868					0.123354128793153
GLLLIKKT	8	Unmodified	_GLLLIKKT_					0	0	0			REV__ENST00000508369.5_1_4:89702440-89708928:-|nuORF	REV__ENST00000508369.5_1_4:89702440-89708928:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2873840332031	2	443.310221	884.605889	-0.52624	-0.00023329	0.72297	0.0003205	0.19673	8.7214E-05	443.310488103712	35.421	0.54812	35.209	34.924	35.472	-0.21246					21	13	3	0	0	0	0.027866	1	2692	2692		8.8223	0.59103	1	182410	+		20099	34064	13985	14012	22869	22869					0.15897013213316313
GLLLLAPSV	9	Unmodified	_GLLLLAPSV_					0	0	0		ENSG00000136827|ENST00000351698|TOR1A;nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF	ENSG00000136827|ENST00000351698|TOR1A	ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7880859375	2	441.786579	881.558604	-0.73639	-0.00032533	3.7839	0.0016717	3.0475	0.0013464	441.78816325900505	40.674	1.7833	40.537	40.09	41.874	-0.13704					126	47	4	0	0	0	0.52323	6	3605	3533;3544;3568;3593;3605;3620		57.811	17.239	1	20144000			20100	5052	13986	14013	22870;22871;22872;22873;22874;22875	22874					0.11308733942325944
GLLLLAPSV	9	Unmodified	_GLLLLAPSV_					0	0	0		ENSG00000136827|ENST00000351698|TOR1A;nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF	ENSG00000136827|ENST00000351698|TOR1A	ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7876281738281	2	441.786579	881.558604	-0.29735	-0.00013137	3.287	0.0014522	2.9897	0.0013208	441.7879427918054	40.843	1.9371	40.615	40.184	42.121	-0.2278					180	51	6	0	0	0	0.80658	4	3643	3555;3567;3615;3643		38.806	6.7195	1	18973000			20101	5052	13986	14013	22876;22877;22878;22879	22879					0.11308733942325944
GLLLLAPSV	9	Unmodified	_GLLLLAPSV_					0	0	0		ENSG00000136827|ENST00000351698|TOR1A;nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF	ENSG00000136827|ENST00000351698|TOR1A	ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.78802490234375	2	441.786579	881.558604	-0.75125	-0.00033189	3.7526	0.0016578	3.0013	0.0013259	441.788141210744	40.907	2.019	40.676	40.158	42.177	-0.23029					183	54	5	0	0	0	0.75282	7	3550	3550;3561;3573;3585;3597;3621;3635		42.474	17.024	1	21377000			20102	5052	13986	14013	22880;22881;22882;22883;22884;22885;22886	22880					0.11308733942325944
GLLLLLVPLT	10	Unmodified	_GLLLLLVPLT_					0	0	0			REV__ENST00000082468.11_1_6:26405791-26410201:+|nuORF	REV__ENST00000082468.11_1_6:26405791-26410201:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2982788085938	2	526.359911	1050.70527	-1.3403	-0.00070548	3.1436	0.0016547	1.8033	0.00094919	526.3613853503632	38.451	1.186	38.479	37.952	39.138	0.027275					62	32	3	0	0	0	0.03519	1	3191	3191		16.473	0	1	361060	+		20103	20027	13987	14014	22887	22887					0.1819441110740172
GLLLLPEK	8	Unmodified	_GLLLLPEK_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7880859375	2	441.786579	881.558604	0.87176	0.00038513	2.2048	0.00097404	3.0765	0.0013592	441.78747647612784	40.712	1.9602	40.589	40.197	42.158	-0.12317					202	55	5	0	0	0	1.0574	1	3631	3631		21.702	1.2205	1	30089000			20104	1536	13988	14015	22888	22888					0.11308733942325944
GLLLPAGVAL	10	Unmodified	_GLLLPAGVAL_					0	0	0			REV__ENSG00000154174|ENST00000284320|TOMM70	REV__ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.3000183105469	2	462.299853	922.585153	0.09376	4.3345E-05	0.27384	0.00012659	0.3676	0.00016994	462.2998587291782	86.477	0.56182	86.432	86.163	86.725	-0.045097					30	12	3	0	0	0	1.0812	1	10831	10831		35.201	8.4046	1	366710	+		20105	24945	13989	14016	22889	22889					0.12076422833661127
GLLLPTLAA	9	Unmodified	_GLLLPTLAA_					0	0	0			REV__ENST00000472658.1_1_1:16270204-16270420:-|nuORF	REV__ENST00000472658.1_1_1:16270204-16270420:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.77996826171875	2	434.778754	867.542954	0.14807	6.4377E-05	2.8093	0.0012214	2.9574	0.0012858	434.77981426491095	46.923	1.4792	46.654	46.379	47.858	-0.26939					156	40	5	0	0	0	0.75282	1	4555	4555		42.474	1.9018	1	5703000	+		20106	33214	13990	14017	22890	22890					0.10388447425270897
GLLLSPVVA	9	Unmodified	_GLLLSPVVA_					0	0	0			REV__nc|ENSG00000117016|Q9UJD0-2|RIMS3	REV__nc|ENSG00000117016|Q9UJD0-2|RIMS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7798767089844	2	434.778754	867.542954	0.14807	6.4377E-05	2.8093	0.0012214	2.9574	0.0012858	434.77981426491095	46.923	1.4792	46.654	46.379	47.858	-0.26939					156	40	5	0	0	0	1.0051	1	4591	4591		19.36	1.0356	1	5703000	+		20107	36594	13991	14018	22891	22891					0.10388447425282266
GLLLSYII	8	Unmodified	_GLLLSYII_					0	0	0			REV__RYR2|p.C4310Y|1|0.38|ENSG00000198626|chr1:237784641-237784641|G/A|missense_variant	REV__RYR2|p.C4310Y|1|0.38|ENSG00000198626|chr1:237784641-237784641|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.6360168457031	2	446.281129	890.547705	-0.81003	-0.0003615	-2.3368	-0.0010429	-3.1468	-0.0014044	446.2799387337656	39.634	0.45313	39.657	39.421	39.874	0.023727					27	12	3	0	0	0	0.027866	1	3332	3332		35.201	0	1	416400	+		20108	37454	13992	14019	22892	22892					0.09805331568031761
GLLLSYII	8	Unmodified	_GLLLSYII_					0	0	0			REV__RYR2|p.C4310Y|1|0.38|ENSG00000198626|chr1:237784641-237784641|G/A|missense_variant	REV__RYR2|p.C4310Y|1|0.38|ENSG00000198626|chr1:237784641-237784641|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	446.281129	890.547705	0.13615	6.0761E-05	-3.0262	-0.0013506	-2.8901	-0.0012898	446.27953808198777	39.361	0.44657	39.361	39.148	39.594	0	-0.083183	-0.00051295	NaN	35.201	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302320	+		20109	37454	13992	14019							0.09805331568031761
GLLLSYII	8	Unmodified	_GLLLSYII_					0	0	0			REV__RYR2|p.C4310Y|1|0.38|ENSG00000198626|chr1:237784641-237784641|G/A|missense_variant	REV__RYR2|p.C4310Y|1|0.38|ENSG00000198626|chr1:237784641-237784641|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	446.281129	890.547705	-0.66456	-0.00029658	-2.0943	-0.00093464	-2.7588	-0.0012312	446.2799940440355	39.413	0.5988	39.314	39.054	39.653	-0.098751	-0.13014	0.00031889	NaN	35.201	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262460	+		20110	37454	13992	14019							0.09805331568031761
GLLLVGTVP	9	Unmodified	_GLLLVGTVP_					0	0	0			REV__ENST00000551528.5_1_12:42604222-42604489:-|nuORF	REV__ENST00000551528.5_1_12:42604222-42604489:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7797546386719	2	434.778754	867.542954	0.072718	3.1616E-05	2.8406	0.001235	2.9133	0.0012666	434.77984164352523	46.699	1.5772	46.505	46.165	47.742	-0.19387					162	43	6	0	0	0	0.90698	1	4535	4535		31.955	0	1	7314300	+		20111	34934	13993	14020	22893	22893					0.10388447425282266
GLLLWPVL	8	Unmodified	_GLLLWPVL_					0	0	0			REV__nc|ENSG00000005486|Q6NTF9-3|RHBDD2	REV__nc|ENSG00000005486|Q6NTF9-3|RHBDD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7712707519531	2	455.791664	909.568775	0.091659	4.1778E-05	1.8921	0.0008624	1.9837	0.00090417	455.79211240176903	73.165	0.18987	73.174	73.027	73.217	0.0096512					6	4	2	0	0	0	0.027866	1	8825	8825		16.705	0	1	56362	+		20112	19809	13994	14021	22894	22894					0.11037341667554301
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000203995|ENST00000371528|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MSMS	OPSCC_39_ClassI_Rep-1	1	471.7663269042969	2	471.766374	941.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.202	1	76.202	75.702	76.702	0								0	0	0	0.023421	1	9386	9386		125.81	40.898	1				20113	10291;6931	13995	14022	22895	22895					0.045097675518945834
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000203995|ENST00000371528|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MSMS	OPSCC_39_ClassI_Rep-1	1	471.7663269042969	2	471.766374	941.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.281	1	76.281	75.781	76.781	0								0	0	0	0.066877	1	9398	9398		101.6	27.346	1				20114	10291;6931	13995	14022	22896	22896					0.045097675518945834
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000203995|ENST00000371528|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.76605224609375	2	471.766374	941.518196	-0.013599	-6.4153E-06	0.47998	0.00022644	0.46638	0.00022002	471.76641638137266	76.474	0.64065	76.246	75.927	76.567	-0.22843					26	15	2	0	0	0	0.067814	2	9385	9385;9397		122.18	14.088	1	1310500			20115	10291;6931	13995	14022	22897;22898	22897					0.045097675518945834
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000203995|ENST00000371528|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7663269042969	2	471.766374	941.518196	0.74743	0.00035261	-0.30333	-0.0001431	0.44411	0.00020951	471.7659957679475	76.282	0.51499	76.294	76.015	76.53	0.011635					23	12	2	0	0	0	0.072054	2	9308	9308;9320		120.62	30.161	1	1366100			20116	10291;6931	13995	14022	22899;22900	22899					0.045097675518945834
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000203995|ENST00000371528|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.7665100097656	2	471.766374	941.518196	-0.24705	-0.00011655	0.62136	0.00029314	0.37432	0.00017659	471.76636421533215	76.313	0.62299	76.144	75.816	76.439	-0.16853					25	14	2	0	0	0	0.12602	1	9054	9054		104.75	19.387	1	758670			20117	10291;6931	13995	14022	22901	22901					0.045097675518945834
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000203995|ENST00000371528|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	471.766374	941.518196	0.12405	5.8522E-05	0.22993	0.00010847	0.35398	0.00016699	471.766234002956	76.499	0.62695	76.231	75.968	76.595	-0.26806	0.0069443	-5.4824E-05	NaN	122.18	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	952080			20118	10291;6931	13995	14022							0.045097675518945834
GLLNNIAEV	9	Unmodified	_GLLNNIAEV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000203995|ENST00000371528|ZYG11A;ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.766374	941.518196	0.17151	8.0913E-05	0.57511	0.00027132	0.74662	0.00035223	471.7662320422676	76.458	1.0617	76.207	75.679	76.741	-0.25162	-0.017706	0.00027086	NaN	122.18	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817750			20119	10291;6931	13995	14022							0.045097675518945834
GLLPAGGVW	9	Unmodified	_GLLPAGGVW_					0	0	0		ENST00000444078.5_1_2:231774643-231775150:-|nuORF	ENST00000444078.5_1_2:231774643-231775150:-|nuORF	ENST00000444078.5_1_2:231774643-231775150:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.27423095703125	2	435.247621	868.480688	0.65092	0.00028331	-0.70695	-0.0003077	-0.05603	-2.4387E-05	435.2471922400986	54.241	0.95502	54.044	53.556	54.511	-0.19739					46	27	3	0	0	0	0.024389	1	5809	5809		39.021	26.062	1	1030900			20120	14413	13996	14023	22902	22902					0.0411872107695217
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.7654724121094	2	455.765843	909.517133	0.83742	0.00038167	-0.84013	-0.0003829	-0.0027074	-1.234E-06	455.76534454096054	88.887	1.2185	88.887	88.555	89.774	0					52	28	2	0	0	0	0.013805	1	11196	11196		167.82	19.618	1	1512900			20121	4113	13997	14024	22903	22903					0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.7657775878906	2	455.765843	909.517133	0.80569	0.00036721	-0.78925	-0.00035971	0.016443	7.4942E-06	455.76537899754305	88.908	1.1799	88.887	88.482	89.662	-0.021645					52	27	2	0	0	0	0.014251	3	11167	11167;11177;11183		190.71	64.338	1	1572900			20122	4113	13997	14024	22904;22905;22906	22904					0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.7657165527344	2	455.765843	909.517133	0.58803	0.000268	-0.56168	-0.00025599	0.026347	1.2008E-05	455.7654909413758	88.971	1.3484	88.987	88.537	89.886	0.015907					55	31	2	0	0	0	0.01672	1	11131	11131		200.96	76.968	1	1902800			20123	4113	13997	14024	22907	22907					0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.765843	909.517133	-0.33528	-0.00015281	0.18475	8.4201E-05	-0.15053	-6.8607E-05	455.76592382364856	88.89	0.66324	88.72	88.421	89.084	-0.17054	-0.11527	0.00064266	NaN	167.82	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231520			20124	4113	13997	14024							0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	455.765843	909.517133	-0.099974	-4.5565E-05	0.10357	4.7205E-05	0.003599	1.6403E-06	455.76577779378607	88.865	0.71583	88.733	88.36	89.076	-0.13136	-0.10132	0.00056866	NaN	167.82	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320000			20125	4113	13997	14024							0.05875553183000193
GLLPDVPSL	9	Unmodified	_GLLPDVPSL_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;MBOAT7|p.M349Ifs*60|1|0.13|ENSG00000125505|chr19:54174416-54174417|-/A|frameshift_variant;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	455.765843	909.517133	0.19121	8.7149E-05	-0.33169	-0.00015117	-0.14048	-6.4025E-05	455.76559186733573	88.933	0.87541	88.795	88.398	89.273	-0.13762	-0.039444	0.0001719	NaN	167.82	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275680			20126	4113	13997	14024							0.05875553183000193
GLLPEPNILQL	11	Unmodified	_GLLPEPNILQL_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MSMS	OPSCC_39_ClassI_Rep-3	3	603.8582763671875	2	603.858264	1205.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.186	1	99.182	98.682	99.682	-0.0038834								0	0	0	1.0224	1	12601	12601		42.864	6.4175	1				20127	6896	13998	14025	22908	22908					0.10735116262753763
GLLPGRLVSP	10	Unmodified	_GLLPGRLVSP_					0	0	0			REV__nc|ENSG00000115808|O43815-2|STRN	REV__nc|ENSG00000115808|O43815-2|STRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.29296875	2	504.813659	1007.61277	-0.92917	-0.00046906	-0.021872	-1.1041E-05	-0.95105	-0.0004801	504.8134873142109	44.001	2.4571	43.856	42.662	45.119	-0.14471					100	69	2	0	0	0	0.03519	1	4256	4256		35.618	7.736	1	241870	+		20128	36586	13999	14026	22909	22909					0.10926326093897387
GLLPGRLVSP	10	Unmodified	_GLLPGRLVSP_					0	0	0			REV__nc|ENSG00000115808|O43815-2|STRN	REV__nc|ENSG00000115808|O43815-2|STRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.813659	1007.61277	-0.9036	-0.00045615	-0.032237	-1.6274E-05	-0.93584	-0.00047242	504.8133836504406	43.788	1.4058	43.788	42.715	44.12	0	0.033108	0.00034388	NaN	25.574	68	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278500	+		20129	36586	13999	14026							0.10926326093897387
GLLPGRLVSP	10	Unmodified	_GLLPGRLVSP_					0	0	0			REV__nc|ENSG00000115808|O43815-2|STRN	REV__nc|ENSG00000115808|O43815-2|STRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.813659	1007.61277	0.10373	5.2367E-05	-0.93095	-0.00046995	-0.82721	-0.00041759	504.8129801708999	43.589	1.4364	43.62	42.83	44.266	0.030827	-0.13454	-0.00056348	NaN	25.574	73	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242850	+		20130	36586	13999	14026							0.10926326093897387
GLLPPSADL	9	Unmodified	_GLLPPSADL_					0	0	0		ENST00000243326.9_1_2:152266501-152266783:+|nuORF	ENST00000243326.9_1_2:152266501-152266783:+|nuORF	ENST00000243326.9_1_2:152266501-152266783:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2658386230469	2	441.750193	881.485833	-0.44947	-0.00019856	1.1078	0.00048937	0.65833	0.00029082	441.75041424193495	60.394	0.77769	60.394	59.914	60.692	0					53	20	4	0	0	0	0.024436	1	6910	6910		23.042	0	1	1290600			20131	11292	14000	14027	22910	22910					0.04034980148901468
GLLPRVRGGL	10	Unmodified	_GLLPRVRGGL_					0	0	0		ENST00000311008.15_1_16:28986148-28986283:+|nuORF	ENST00000311008.15_1_16:28986148-28986283:+|nuORF	ENST00000311008.15_1_16:28986148-28986283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.26611328125	2	519.33255	1036.65055	-0.87331	-0.00045354	0.0043499	2.2591E-06	-0.86897	-0.00045128	519.3323912893806	50.692	0.78609	50.773	50.51	51.296	0.080994					50	21	3	0	0	0	0.03519	1	5336	5336		20.947	0	1	1351000			20132	12075	14001	14028	22911	22911					0.1336883707938341
GLLPSPLAV	9	Unmodified	_GLLPSPLAV_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	OPSCC_39_ClassI_Rep-1	1	433.7708435058594	2	433.770929	865.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.429	1	85.429	84.929	85.929	0								0	0	0	0.014375	1	10716	10716		148.21	33.62	1				20133	6886	14002	14029	22912	22912					0.08916160908222537
GLLPSPLAV	9	Unmodified	_GLLPSPLAV_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	OPSCC_39_ClassI_Rep-1	1	433.77093505859375	2	433.770929	865.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.501	1	85.501	85.001	86.001	0								0	0	0	0.077235	1	10726	10726		97.473	8.8298	1				20134	6886	14002	14029	22913	22913					0.08916160908222537
GLLPSPLAV	9	Unmodified	_GLLPSPLAV_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	OPSCC_39_ClassI_Rep-1	1	433.77093505859375	2	433.770929	865.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.584	1	85.584	85.084	86.084	0								0	0	0	0.046959	1	10738	10738		110.34	9.1257	1				20135	6886	14002	14029	22914	22914					0.08916160908222537
GLLPSPLAV	9	Unmodified	_GLLPSPLAV_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	OPSCC_39_ClassI_Rep-2	2	433.77081298828125	2	433.770929	865.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.469	1	85.411	84.911	85.911	-0.05761								0	0	0	0.027618	1	10687	10687		119.56	18.345	1				20136	6886	14002	14029	22915	22915					0.08916160908222537
GLLPSPLAV	9	Unmodified	_GLLPSPLAV_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	OPSCC_39_ClassI_Rep-2	2	433.77105712890625	2	433.770929	865.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.539	1	85.481	84.981	85.981	-0.05761								0	0	0	0.024645	1	10697	10697		123.99	9.4029	1				20137	6886	14002	14029	22916	22916					0.08916160908222537
GLLPSPLAV	9	Unmodified	_GLLPSPLAV_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.77099609375	2	433.770929	865.527304	-0.33969	-0.00014735	1.2915	0.00056024	0.95186	0.00041289	433.771074344032	85.437	1.499	85.463	84.662	86.161	0.025528					70	35	4	0	0	0	0.062871	3	10639	10627;10639;10649		123.99	9.4029	1	1830100			20138	6886	14002	14029	22917;22918;22919	22918					0.08916160908222537
GLLQFTILL	9	Unmodified	_GLLQFTILL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.3212890625	2	509.320786	1016.62702	0.80436	0.00040968	-0.39038	-0.00019883	0.41398	0.00021085	509.32028968883503	107.18	0.56009	107.18	106.91	107.47	0					36	13	3	0	0	0	0.047345	3	13751	13751;13759;13771		129.68	21.595	1	370820			20139	1738	14003	14030	22920;22921;22922	22920					0.11936978522192021
GLLQFTILL	9	Unmodified	_GLLQFTILL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.82049560546875	2	509.320786	1016.62702	0.03139	1.5988E-05	-0.1555	-7.9198E-05	-0.12411	-6.3211E-05	509.3206392516868	107.05	0.61258	107.05	106.83	107.44	-0.003479					31	19	2	0	0	0	0.17822	2	13702	13702;13709		93.195	10.89	1	247190			20140	1738	14003	14030	22923;22924	22923					0.11936978522192021
GLLQFTILL	9	Unmodified	_GLLQFTILL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.32275390625	2	509.320786	1016.62702	-0.1059	-5.3935E-05	0.24402	0.00012428	0.13812	7.0349E-05	509.32074025046046	107.39	0.44311	107.4	107.03	107.47	0.0018311					22	11	2	0	0	0	0.4752	1	13696	13696		60.972	5.4677	1	138210			20141	1738	14003	14030	22925	22925					0.11936978522192021
GLLQFTILL	9	Unmodified	_GLLQFTILL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3219299316406	2	509.320786	1016.62702	-0.025268	-1.2869E-05	0.14723	7.4989E-05	0.12197	6.2119E-05	509.3207037455496	106.92	0.67344	106.8	106.68	107.35	-0.1238					37	22	3	0	0	0	0.53979	1	13300	13300		56.721	5.3856	1	150310			20142	1738	14003	14030	22926	22926					0.11936978522192021
GLLQFTILL	9	Unmodified	_GLLQFTILL_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.320786	1016.62702	-1.3978	-0.00071192	1.2527	0.00063805	-0.14502	-7.3864E-05	509.3213064481188	107.08	0.63	106.95	106.7	107.33	-0.1346	0.035919	0.0011825	NaN	56.721	29	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48822			20143	1738	14003	14030							0.11936978522192021
GLLQGLVKYKF	11	Unmodified	_GLLQGLVKYKF_					0	0	0			REV__chr6:113623054-113623171|513|24.1|0.0|21.2|-|0|LINC02541,LINC02541|1	REV__chr6:113623054-113623171|513|24.1|0.0|21.2|-|0|LINC02541,LINC02541|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5931396484375	3	422.592058	1264.75434	-0.52618	-0.00022236	2.0445	0.00086399	1.5183	0.00064163	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	1.0233	1	5320	5320		31.634	6.5083	1	14959000	+		20144	19453	14004	14031	22927	22927					0.13255699396358978
GLLQGLVKYKF	11	Unmodified	_GLLQGLVKYKF_					0	0	0			REV__chr6:113623054-113623171|513|24.1|0.0|21.2|-|0|LINC02541,LINC02541|1	REV__chr6:113623054-113623171|513|24.1|0.0|21.2|-|0|LINC02541,LINC02541|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.5921936035156	3	422.592058	1264.75434	0.6876	0.00029057	1.1371	0.00048051	1.8247	0.00077109	422.5924533889246	49.865	3.5983	49.684	49.002	52.6	-0.18071					269	94	5	0	0	0	1.0371	1	5073	5073		28.577	3.4507	1	10769000	+		20145	19453	14004	14031	22928	22928					0.13255699396358978
GLLRAKKAR	9	Unmodified	_GLLRAKKAR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3157043457031	2	506.840542	1011.66653	0.23894	0.0001211	0.15222	7.7153E-05	0.39116	0.00019826	506.8398213917734	69.147	0.48566	68.855	68.753	69.238	-0.29276					25	12	3	0	0	0	0.024457	1	8315	8315		21.96	3.6355	1	107880	+		20146	23044	14005	14032	22929	22929					0.16116543316263687
GLLSAMEYV	9	Unmodified	_GLLSAMEYV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7492370605469	2	491.749336	981.484119	-0.31492	-0.00015486	0.81105	0.00039883	0.49612	0.00024397	491.7495465964224	85.465	0.91447	85.407	85.063	85.977	-0.05761					47	21	4	0	0	0	0.20967	1	10705	10705		87.754	39.839	1	862670			20147	7843	14006	14033	22930	22930					-0.007363969313587404
GLLSAMEYV	9	Unmodified	_GLLSAMEYV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7493591308594	2	491.749336	981.484119	-0.8565	-0.00042118	1.12	0.00055075	0.26349	0.00012957	491.7497442361573	85.427	0.86971	85.453	85.119	85.988	0.025536					60	20	5	0	0	0	0.15029	1	10645	10645		99.375	51.459	1	1146200			20148	7843	14006	14033	22931	22931					-0.007363969313587404
GLLSAMEYV	9	Unmodified	_GLLSAMEYV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.749336	981.484119	1.0818	0.00053198	-0.68159	-0.00033517	0.40021	0.00019681	491.74880218279554	85.478	0.79115	85.478	85.164	85.956	0	0.064765	-0.0011148	NaN	99.375	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106300			20149	7843	14006	14033							-0.007363969313587404
GLLSAMEYV	9	Unmodified	_GLLSAMEYV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.749336	981.484119	-0.11379	-5.5954E-05	0.39479	0.00019414	0.281	0.00013818	491.74949473158017	85.511	0.54518	85.316	85.006	85.552	-0.19508	-0.097635	-5.6163E-05	NaN	99.375	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213640			20150	7843	14006	14033							-0.007363969313587404
GLLSGEHAYL	10	Unmodified	_GLLSGEHAYL_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2778930664062	2	530.277106	1058.53966	-0.49955	-0.0002649	1.0183	0.00054	0.51878	0.0002751	530.2773461568727	57.936	0.95255	57.759	57.281	58.233	-0.17775					74	23	5	0	0	0	0.72219	1	6340	6340		65.803	2.4969	1	12046000			20151	9891	14007	14034	22932	22932					0.012731525806202626
GLLSIFTKV	9	Unmodified	_GLLSIFTKV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.3052062988281	2	489.305136	976.595718	-0.13567	-6.6382E-05	0.18066	8.84E-05	0.044999	2.2018E-05	489.30510788138645	80.381	1.6819	80.143	79.874	81.555	-0.23784					54	40	3	0	0	0	0.32811	1	9629	9629		71.877	20.542	1	670450			20152	3505	14008	14035	22933	22933					0.10648405488097978
GLLSIFTKV	9	Unmodified	_GLLSIFTKV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.3055114746094	2	489.305136	976.595718	0.36035	0.00017632	-0.51102	-0.00025004	-0.15067	-7.3723E-05	489.30471390536684	80.328	0.90413	80.121	79.843	80.747	-0.20632					40	21	3	0	0	0	0.37611	2	9636	9636;9647		67.494	23.116	1	505950			20153	3505	14008	14035	22934;22935	22934					0.10648405488097978
GLLSIFTKV	9	Unmodified	_GLLSIFTKV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.3055114746094	2	489.305136	976.595718	0.24983	0.00012224	-0.21639	-0.00010588	0.033434	1.6359E-05	489.3048867422723	80.282	1.4459	80.136	79.743	81.189	-0.146					47	34	3	0	0	0	0.72494	2	9603	9603;9616		44.377	11.565	1	590770			20154	3505	14008	14035	22936;22937	22936					0.10648405488097978
GLLSIFTKV	9	Unmodified	_GLLSIFTKV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	489.305136	976.595718	-0.42077	-0.00020589	0.4394	0.000215	0.01863	9.1156E-06	489.30523317067315	80.472	0.66376	80.472	80.12	80.784	0	0.16788	8.4575E-05	NaN	71.877	44	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	750820			20155	3505	14008	14035							0.10648405488097978
GLLSIFTKV	9	Unmodified	_GLLSIFTKV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	489.305136	976.595718	-0.99018	-0.0004845	0.98986	0.00048434	-0.00032423	-1.5865E-07	489.3054963075561	80.641	0.78827	80.489	80.049	80.838	-0.15168	0.18467	0.00062326	NaN	71.877	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	721720			20156	3505	14008	14035							0.10648405488097978
GLLSIFTKV	9	Unmodified	_GLLSIFTKV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.305136	976.595718	-1.0612	-0.00051926	1.0914	0.00053403	0.03019	1.4772E-05	489.305542248415	80.443	0.74545	80.464	80.104	80.85	0.021439	0.16002	0.00072263	NaN	71.877	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	724840			20157	3505	14008	14035							0.10648405488097978
GLLSLAKPL	9	Unmodified	_GLLSLAKPL_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.28240966796875	2	456.299853	910.585153	-0.33725	-0.00015389	3.1644	0.0014439	2.8272	0.00129	456.30123320932967	34.668	1.7366	34.718	34.441	36.178	0.050255					107	45	3	0	0	0	0.024294	1	2567	2567		21.96	1.013	1	1097700			20158	897	14009	14036	22938	22938					0.1262842283365444
GLLSLPPELL	10	Unmodified	_GLLSLPPELL_					0	0	0		ENSG00000132004|ENST00000393261|FBXW9;nc|ENSG00000132004|Q5XUX1-2|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3119506835938	2	526.323525	1050.6325	-0.329	-0.00017316	-2.3282	-0.0012254	-2.6572	-0.0013985	526.3219469460226	36.471	0.85941	36.509	36.065	36.924	0.038044					46	23	3	0	0	0	0.03519	1	2904	2904		23.042	0	1	454520			20159	4569	14010	14037	22939	22939					0.10920657313999982
GLLSLSVGAL	10	Unmodified	_GLLSLSVGAL_					0	0	0			REV__nc|ENSG00000177300|Q8N7P3|CLDN22	REV__nc|ENSG00000177300|Q8N7P3|CLDN22	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2866516113281	2	465.286943	928.559333	-0.12496	-5.8141E-05	-0.4685	-0.00021799	-0.59346	-0.00027613	465.28662389408925	93.908	1.0143	93.908	93.472	94.486	0					59	24	4	0	0	0	0.87795	1	11928	11928		55.504	2.1528	1	1807600	+		20160	36971	14011	14038	22940	22940					0.09219528591370363
GLLSSLVQL	9	Unmodified	_GLLSSLVQL_					0	0	0		nc|ENSG00000014914|A4FU01-4|MTMR11;ENSG00000014914|ENST00000439741|MTMR11	nc|ENSG00000014914|A4FU01-4|MTMR11	nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2868957519531	2	465.286943	928.559333	-0.28139	-0.00013093	-0.13536	-6.2979E-05	-0.41674	-0.00019391	465.2867434848162	93.798	0.85059	93.796	93.455	94.306	-0.0013962					51	20	4	0	0	0	0.25032	1	11887	11887		82.305	2.854	1	2192800			20161	926	14012	14039	22941	22941					0.09219528591370363
GLLTGIFLRYL	11	Unmodified	_GLLTGIFLRYL_					0	0	0		ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5926208496094	3	422.592058	1264.75434	-0.52618	-0.00022236	2.0445	0.00086399	1.5183	0.00064163	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	0.92638	5	5247	5162;5247;5271;5283;5295		50.034	21.457	1	14959000			20162	11274	14013	14040	22942;22943;22944;22945;22946	22943					0.13255699396381715
GLLTGIFLRYL	11	Unmodified	_GLLTGIFLRYL_					0	0	0		ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5929260253906	3	422.592058	1264.75434	-0.089071	-3.7641E-05	1.6121	0.00068126	1.523	0.00064362	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0022	4	5264	5253;5264;5275;5300		36.318	8.1116	1	15587000			20163	11274	14013	14040	22947;22948;22949;22950	22948					0.13255699396381715
GLLTGIFLRYL	11	Unmodified	_GLLTGIFLRYL_					0	0	0		ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.59320068359375	3	422.592058	1264.75434	-0.0027145	-1.1471E-06	1.5578	0.00065831	1.5551	0.00065717	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	0.97516	6	5202	5070;5092;5156;5178;5191;5202		42.338	8.1309	1	16177000			20164	11274	14013	14040	22951;22952;22953;22954;22955;22956	22956					0.13255699396381715
GLLTGIFLRYL	11	Unmodified	_GLLTGIFLRYL_					0	0	0		ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.5933837890625	3	422.592058	1264.75434	0.31209	0.00013189	1.4914	0.00063026	1.8035	0.00076215	422.59259397297745	49.759	3.148	49.654	48.913	52.061	-0.10558					256	83	5	0	0	0	0.97516	4	5087	5050;5074;5087;5100		42.338	13.761	1	11811000			20165	11274	14013	14040	22957;22958;22959;22960	22959					0.13255699396381715
GLLTGIFLRYL	11	Unmodified	_GLLTGIFLRYL_					0	0	0		ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.5928039550781	3	422.592058	1264.75434	0.1726	7.2939E-05	1.6943	0.00071598	1.8669	0.00078892	422.5926910721887	50.01	3.5693	49.73	48.973	52.543	-0.27977					269	94	5	0	0	0	0.98082	8	5079	5023;5034;5044;5079;5091;5128;5141;5155		41.08	13.276	1	10812000			20166	11274	14013	14040	22961;22962;22963;22964;22965;22966;22967;22968	22964					0.13255699396381715
GLLTGIFLRYL	11	Unmodified	_GLLTGIFLRYL_					0	0	0		ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.5930480957031	3	422.592058	1264.75434	0.6876	0.00029057	1.1371	0.00048051	1.8247	0.00077109	422.5924533889246	49.865	3.5983	49.684	49.002	52.6	-0.18071					269	94	5	0	0	0	1.0022	5	5097	5039;5062;5085;5097;5124		36.318	7.0967	1	10769000			20167	11274	14013	14040	22969;22970;22971;22972;22973	22972					0.13255699396381715
GLLTLRAKPP	10	Unmodified	_GLLTLRAKPP_					0	0	0		nc|ENSG00000131037|Q8TE68-3|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENSG00000131037|ENST00000201647|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;EPS8L1|p.S312L|1|0.54|ENSG00000131037|chr19:55082125-55082125|C/T|missense_variant	nc|ENSG00000131037|Q8TE68-3|EPS8L1	nc|ENSG00000131037|Q8TE68-3|EPS8L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2594604492188	2	533.342584	1064.67061	-0.38043	-0.0002029	0.53199	0.00028373	0.15156	8.0833E-05	533.3427390688452	65.94	0.72873	65.699	65.457	66.186	-0.24145					47	17	4	0	0	0	0.03519	1	7615	7615		18.262	0	1	1396000			20168	4487	14014	14041	22974	22974					0.1408658801931324
GLLTVFSLRFL	11	Unmodified	_GLLTVFSLRFL_					0	0	0		ENST00000480367.1_1_7:154677243-154681360:+|nuORF	ENST00000480367.1_1_7:154677243-154681360:+|nuORF	ENST00000480367.1_1_7:154677243-154681360:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5926208496094	3	422.592058	1264.75434	-0.52618	-0.00022236	2.0445	0.00086399	1.5183	0.00064163	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	1.0684	1	5258	5258		20.03	0.7678	1	14959000			20169	15197	14015	14042	22975	22975					0.13255699396381715
GLLTVFSLRFL	11	Unmodified	_GLLTVFSLRFL_					0	0	0		ENST00000480367.1_1_7:154677243-154681360:+|nuORF	ENST00000480367.1_1_7:154677243-154681360:+|nuORF	ENST00000480367.1_1_7:154677243-154681360:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.59234619140625	3	422.592058	1264.75434	-0.089071	-3.7641E-05	1.6121	0.00068126	1.523	0.00064362	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0684	1	5230	5230		20.03	0.7678	1	15587000			20170	15197	14015	14042	22976	22976					0.13255699396381715
GLLVESHLKKR	11	Unmodified	_GLLVESHLKKR_					0	0	0			REV__ENST00000261038.5_1_3:122598211-122598370:+|nuORF	REV__ENST00000261038.5_1_3:122598211-122598370:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2643127441406	3	427.266345	1278.7772	-0.45996	-0.00019653	-4.0555	-0.0017328	-4.5154	-0.0019293	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0233	3	5978	5978;5990;6002		31.634	4.283	1	57851000	+		20171	29608	14016	14043	22977;22978;22979	22977					0.14896718513841734
GLLVESHLKKR	11	Unmodified	_GLLVESHLKKR_					0	0	0			REV__ENST00000261038.5_1_3:122598211-122598370:+|nuORF	REV__ENST00000261038.5_1_3:122598211-122598370:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.26458740234375	3	427.266345	1278.7772	-0.029898	-1.2774E-05	-4.446	-0.0018996	-4.4759	-0.0019124	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0233	2	5846	5846;5905		31.634	2.5407	1	50736000	+		20172	29608	14016	14043	22980;22981	22980					0.14896718513841734
GLLVPKVP	8	Unmodified	_GLLVPKVP_					0	0	0		ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	411.7745361328125	2	411.776014	821.537475	0.55371	0.00022801	-3.4814	-0.0014336	-2.9277	-0.0012056	411.7743975435321	108.55	0.13456	108.55	108.46	108.6	0.0047836					11	6	2	0	0	0	1.0574	1	13782	13782		23.037	1.3344	1	1235900			20173	11208	14017	14044	22982	22982					0.11956768633467618
GLLVPKVP	8	Unmodified	_GLLVPKVP_					0	0	0		ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	411.776014	821.537475	2.0011	0.00082399	-4.6848	-0.0019291	-2.6838	-0.0011051	411.77391774163044	108.54	0.17379	108.54	108.44	108.61	0	0.036233	-0.00070445	NaN	23.037	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1375700			20174	11208	14017	14044							0.11956768633467618
GLLVPKVP	8	Unmodified	_GLLVPKVP_					0	0	0		ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	411.776014	821.537475	0.62347	0.00025673	-3.8765	-0.0015963	-3.2531	-0.0013395	411.7743582947748	108.51	0.11745	108.5	108.47	108.59	-0.0056458	-0.0053666	-3.8784E-05	NaN	23.037	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2197000			20175	11208	14017	14044							0.11956768633467618
GLNCRYTV	8	Unmodified	_GLNCRYTV_					0	0	0			REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.2328796386719	2	463.231645	924.448736	0.18268	8.4623E-05	2.926	0.0013554	3.1087	0.00144	463.2328416606378	53.621	0.7412	53.716	53.407	54.148	0.095669					47	20	3	0	0	0	0.50239	1	5736	5736		85.359	8.5128	1	2492200	+		20176	28539	14018	14045	22983	22983					-0.01651014668505013
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2954711914062	2	524.295299	1046.57605	-0.19363	-0.00010152	0.26876	0.00014091	0.075131	3.9391E-05	524.2956281829968	71.585	1.5662	71.585	71.301	72.867	0					117	39	6	0	0	0	0.020687	5	8690	8667;8678;8690;8702;8760		148.99	32.083	1	44830000			20177	3690;16335	14019	14046	22984;22985;22986;22987;22988	22986					0.05462029477325814
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2959594726562	2	524.295299	1046.57605	0.22826	0.00011968	0.037068	1.9435E-05	0.26533	0.00013911	524.29558467656	71.958	1.4705	71.669	71.313	72.783	-0.28858					113	37	5	0	0	0	0.016542	5	8701	8673;8677;8689;8701;8713		154.12	39.533	1	51455000			20178	3690;16335	14019	14046	22989;22990;22991;22992;22993	22992					0.05462029477325814
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2955322265625	2	524.295299	1046.57605	0.31245	0.00016382	-0.19992	-0.00010481	0.11253	5.9001E-05	524.2954431978924	71.652	1.506	71.663	71.396	72.902	0.010735					109	38	5	0	0	0	0.015752	4	8624	8600;8612;8624;8636		158.07	41.171	1	45589000			20179	3690;16335	14019	14046	22994;22995;22996;22997	22996					0.05462029477325814
GLNDKLLW	8	Unmodified	_GLNDKLLW_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7713928222656	2	479.77146	957.528367	0.32479	0.00015583	-0.071938	-3.4514E-05	0.25285	0.00012131	479.77121942885924	88.559	1.2113	88.422	88.105	89.316	-0.13744					73	28	4	0	0	0	0.43637	1	10795	10795		92.191	3.5478	1	1951000	+		20180	23732	14020	14047	22998	22998					0.047903752771503605
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7752990722656	2	500.774731	999.534909	-0.31709	-0.00015879	0.3905	0.00019555	0.073404	3.6759E-05	500.7748957546527	50.462	0.82401	50.462	49.986	50.81	0					74	24	4	0	0	0	0.025498	5	5294	5273;5282;5294;5306;5319		145.16	30.027	1	15659000			20181	1700	14021	14048	22999;23000;23001;23002;23003	23001					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7748718261719	2	500.774731	999.534909	-0.13287	-6.6539E-05	0.21673	0.00010853	0.08386	4.1995E-05	500.77481146145897	50.661	0.93531	50.512	49.926	50.861	-0.14915					81	27	4	0	0	0	0.013065	4	5295	5281;5295;5307;5320		171.53	49.356	1	15940000			20182	1700	14021	14048	23004;23005;23006;23007	23005					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7751159667969	2	500.774731	999.534909	0.18273	9.1508E-05	-0.12465	-6.2422E-05	0.058084	2.9087E-05	500.7746440533419	50.336	0.79039	50.417	49.954	50.744	0.080994					72	23	4	0	0	0	0.015752	4	5201	5179;5188;5201;5213		158.07	47.955	1	15804000			20183	1700	14021	14048	23008;23009;23010;23011	23010					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7744445800781	2	500.774731	999.534909	0.19311	9.6705E-05	-0.064158	-3.2129E-05	0.12895	6.4576E-05	500.7745866925686	50.568	1.6595	50.456	49.888	51.548	-0.11163					106	43	4	0	0	0	0.10464	4	5158	5134;5146;5158;5171		109.48	18.702	1	13967000			20184	1700	14021	14048	23012;23013;23014;23015	23014					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.77459716796875	2	500.774731	999.534909	0.191	9.5646E-05	0.0032765	1.6408E-06	0.19427	9.7287E-05	500.77461231056833	50.777	1.3549	50.501	50.149	51.504	-0.27643					87	35	4	0	0	0	0.01896	1	5199	5199		150.36	46.305	1	16717000			20185	1700	14021	14048	23016	23016					0.035122684378507074
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7747497558594	2	500.774731	999.534909	-0.035248	-1.7652E-05	0.18947	9.4884E-05	0.15423	7.7232E-05	500.7747404907621	50.693	1.166	50.513	50.055	51.222	-0.18071					83	30	4	0	0	0	0.034407	2	5158	5158;5183		138.06	27.943	1	16461000			20186	1700	14021	14048	23017;23018	23017					0.035122684378507074
GLNEELAYL	9	Unmodified	_GLNEELAYL_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2634582519531	2	511.263665	1020.51278	-0.48052	-0.00024567	-0.34275	-0.00017523	-0.82327	-0.00042091	511.2634510533967	79.185	0.95994	79.185	78.91	79.87	0					54	22	4	0	0	0	0.31037	1	9822	9822		74.255	1.6351	1	1032100		+	20187	524	14022	14049	23019	23019					0.003340439694284214
GLNEELAYL	9	Unmodified	_GLNEELAYL_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2633972167969	2	511.263665	1020.51278	-0.85362	-0.00043642	-0.14686	-7.5086E-05	-1.0005	-0.00051151	511.26360503462166	79.328	1.0011	79.156	78.902	79.904	-0.17226					50	23	3	0	0	0	0.082191	1	9809	9809		116.9	26.127	1	972510		+	20188	524	14022	14049	23020	23020					0.003340439694284214
GLNEELAYL	9	Unmodified	_GLNEELAYL_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2635192871094	2	511.263665	1020.51278	-0.27252	-0.00013933	-1.0701	-0.00054712	-1.3426	-0.00068644	511.2631466206527	79.155	0.94962	79.174	78.903	79.853	0.018677					56	22	4	0	0	0	0.12602	1	9732	9732		104.75	13.97	1	1227800		+	20189	524	14022	14049	23021	23021					0.003340439694284214
GLNEELAYL	9	Unmodified	_GLNEELAYL_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2638244628906	2	511.263665	1020.51278	0.54484	0.00027856	-0.7642	-0.00039071	-0.21936	-0.00011215	511.263137661282	79.338	1.085	79.092	78.78	79.865	-0.2465					63	25	4	0	0	0	0.039744	2	9491	9466;9491		133.81	40.617	1	1569000		+	20190	524	14022	14049	23022;23023	23023					0.003340439694284214
GLNEELAYL	9	Unmodified	_GLNEELAYL_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.26348876953125	2	511.263665	1020.51278	0.095078	4.861E-05	-0.51264	-0.0002621	-0.41757	-0.00021349	511.2632229947774	79.315	1.5525	79.096	78.445	79.997	-0.21923					77	36	4	0	0	0	0.082191	1	9499	9499		116.9	42.649	1	1575700		+	20191	524	14022	14049	23024	23024					0.003340439694284214
GLNEELAYL	9	Unmodified	_GLNEELAYL_					0	0	0		CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.26385498046875	2	511.263665	1020.51278	0.09873	5.0477E-05	-0.42754	-0.00021859	-0.32881	-0.00016811	511.2633627073635	79.187	1.4187	79.037	78.694	80.112	-0.15051					76	33	4	0	0	0	0.057894	1	9453	9453		125.81	43.574	1	1347800		+	20192	524	14022	14049	23025	23025					0.003340439694284214
GLNEPDSDL	9	Unmodified	_GLNEPDSDL_					0	0	0		ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	480.219454	958.424355	-0.26083	-0.00012525	1.002	0.0004812	0.74121	0.00035595	480.2197643825758	48.898	0.98378	48.746	48.057	49.041	-0.15277					40	27	2	0	0	0	0.02435	1	4999	4999		34.173	16.808	1	129570			20193	6819	14023	14050	23026	23026					-0.056519963410323726
GLNRKYIP	8	Unmodified	_GLNRKYIP_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7973937988281	2	480.784902	959.55525	0.096148	4.6226E-05	-4.0793	-0.0019613	-3.9832	-0.001915	480.7826721646066	68.88	0.11284	68.88	68.825	68.938	0					4	2	2	0	0	0	0.027866	1	8279	8279		19.36	0	1	113110			20194	14380	14024	14051	23027	23027					0.07385483888310773
GLNTIPLFV	9	Unmodified	_GLNTIPLFV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41275683-41277995:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2895202636719	2	487.289485	972.564418	-0.11103	-5.4103E-05	0.13136	6.4008E-05	0.020327	9.9051E-06	487.2894983609172	93.257	1.2939	93.257	92.794	94.088	0					65	30	4	0	0	0	0.50848	1	11855	11855		58.782	5.4305	1	1269400			20195	7775	14025	14052	23028	23028					0.07703832454001258
GLPAAARSLL	10	Unmodified	_GLPAAARSLL_					0	0	0		ENST00000355947.6_1_7:99516993-99517128:-|nuORF	ENST00000355947.6_1_7:99516993-99517128:-|nuORF	ENST00000355947.6_1_7:99516993-99517128:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.79779052734375	2	484.798009	967.581465	0.55749	0.00027027	-1.5757	-0.00076388	-1.0182	-0.00049361	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.72219	1	6667	6667		65.803	0	1	98413000			20196	12660	14026	14053	23029	23029					0.09637753059791976
GLPELVIQL	9	Unmodified	_GLPELVIQL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.30242919921875	2	491.302593	980.590633	0.25062	0.00012313	-0.16595	-8.1533E-05	0.084664	4.1596E-05	491.3023746723937	95.339	0.94035	95.342	95.045	95.985	0.0033798					51	21	3	0	0	0	0.53979	1	12107	12107		56.721	5.3856	1	1315100			20197	1009	14027	14054	23030	23030					0.09956101625471092
GLPHPRIH	8	Unmodified	_GLPHPRIH_					0	0	0			REV__ENST00000328086.11_1_16:25268609-25269107:-|nuORF	REV__ENST00000328086.11_1_16:25268609-25269107:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2805480957031	2	463.769586	925.524619	0.52034	0.00024132	-1.6075	-0.0007455	-1.0872	-0.00050419	463.7685220783535	41.141	0.69952	41.164	40.864	41.564	0.023006					35	19	3	0	0	0	0.027866	1	3570	3570		23.037	2.5549	1	1275700	+		20198	30427	14028	14055	23031	23031					0.05887750293936733
GLPKKGGAGGK	11	Unmodified	_GLPKKGGAGGK_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2905578613281	2	485.295633	968.576714	-0.8324	-0.00040396	0.85815	0.00041645	0.02575	1.2496E-05	485.2958736542039	27.904	0.91046	27.904	27.58	28.49	0					36	22	2	0	0	0	0.023689	1	1566	1566		62.107	31.604	1	200330			20199	6143	14029	14056	23032	23032					0.09116868917055854
GLPKKGGAGGK	11	Unmodified	_GLPKKGGAGGK_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2905578613281	2	485.295633	968.576714	-0.97447	-0.00047291	0.80766	0.00039195	-0.16682	-8.0955E-05	485.2958983608135	27.607	0.8621	27.688	27.427	28.289	0.081293					35	21	2	0	0	0	0.02479	1	1486	1486		60.118	6.7668	1	186500			20200	6143	14029	14056	23033	23033					0.09116868917055854
GLPKSHLSN	9	Unmodified	_GLPKSHLSN_					0	0	0		ENST00000560400.1_1_17:40007277-40007520:-|nuORF	ENST00000560400.1_1_17:40007277-40007520:-|nuORF	ENST00000560400.1_1_17:40007277-40007520:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7587890625	2	476.764166	951.513779	-0.38185	-0.00018205	-0.43367	-0.00020676	-0.81552	-0.00038881	476.76389443650476	23.06	0.50064	23.137	22.933	23.434	0.076241					18	11	2	0	0	0	0.024495	1	818	818		34.173	0	1	167600			20201	16800	14030	14057	23034	23034					0.036083031289990686
GLPLFPRF	8	Unmodified	_GLPLFPRF_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.77880859375	2	473.779088	945.543623	0.27668	0.00013108	-2.7032	-0.0012807	-2.4265	-0.0011496	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	1.0017	1	957	957		37.028	3.5129	1	5959600			20202	9029	14031	14058	23035	23035					0.06867286864985545
GLPNKVHL	8	Unmodified	_GLPNKVHL_					0	0	0		nc|ENSG00000293412|O75343|GUCY1B2	nc|ENSG00000293412|O75343|GUCY1B2	nc|ENSG00000293412|O75343|GUCY1B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.266845703125	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	1.0574	1	4025	4025		20.482	0	1	3361200			20203	18845	14032	14059	23036	23036					0.07493812342568162
GLPPGCLGP	9	Unmodified	_GLPPGCLGP_					0	0	0			REV__ENST00000498513.5_1_9:130241670-130248879:+|nuORF	REV__ENST00000498513.5_1_9:130241670-130248879:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	2	405.712556	809.41056	0.053623	2.1756E-05	4.2381	0.0017194	4.2917	0.0017412	405.7122942929395	45.559	0.33435	45.408	45.178	45.512	-0.15157					14	9	2	0	0	0	0.024389	1	4417	4417		21.702	0	1	110930	+		20204	33883	14033	14060	23037	23037					-0.0017690058317612056
GLPPILLQ	8	Unmodified	_GLPPILLQ_					0	0	0			REV__ENSG00000089558|ENST00000264661|KCNH4	REV__ENSG00000089558|ENST00000264661|KCNH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.2630920410156	2	425.773471	849.53239	-0.36942	-0.00015729	2.2186	0.00094461	1.8492	0.00078732	425.774364978076	46.103	0.97434	46.103	45.613	46.587	0					35	27	2	0	0	0	0.027866	1	4555	4555		41.208	0	1	120930	+		20205	20855	14034	14061	23038	23038					0.10160464770854105
GLPVVSLLA	9	Unmodified	_GLPVVSLLA_					0	0	0		ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7793273925781	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	0.44472	1	2768	2768		62.978	12.954	1	8541000			20206	4207	14035	14062	23039	23039					0.10388447425282266
GLPVVSLLA	9	Unmodified	_GLPVVSLLA_					0	0	0		ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77972412109375	2	434.778754	867.542954	1.4087	0.00061247	1.711	0.00074391	3.1197	0.0013564	434.779355277664	36.149	1.9951	35.951	35.288	37.284	-0.19829					165	52	6	0	0	0	0.60698	1	2747	2747		52.299	4.3836	1	8518400			20207	4207	14035	14062	23040	23040					0.10388447425282266
GLPVVSLLA	9	Unmodified	_GLPVVSLLA_					0	0	0		ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	434.778754	867.542954	-0.45534	-0.00019797	4.7877	0.0020816	4.3324	0.0018836	434.7802264261397	36.207	1.872	36.207	35.687	37.559	0	0.13969	0.0012237	NaN	62.978	176	50	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14607000			20208	4207	14035	14062							0.10388447425282266
GLPVVSLLA	9	Unmodified	_GLPVVSLLA_					0	0	0		ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	ENSG00000126603|ENST00000433375|GLIS2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	434.778754	867.542954	-0.79814	-0.00034702	3.977	0.0017291	3.1789	0.0013821	434.7804079808556	36.055	1.9532	36.012	35.447	37.4	-0.042458	-0.054592	0.00051871	NaN	62.978	149	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11987000			20209	4207	14035	14062							0.10388447425282266
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2427978515625	2	492.243264	982.471974	0.35187	0.00017321	-0.9494	-0.00046733	-0.59753	-0.00029413	492.2427866071623	37.435	1.1838	37.435	36.887	38.071	0					94	32	5	0	0	0	0.014034	5	3053	3037;3042;3053;3066;3080		166.68	56.341	1	13997000			20210	8496	14036	14063	23041;23042;23043;23044;23045	23043					-0.019962973501833403
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2442932128906	2	492.243264	982.471974	-0.059635	-2.9355E-05	-0.60231	-0.00029648	-0.66195	-0.00032584	492.2429708643567	37.29	1.0018	37.227	36.866	37.868	-0.063385					84	27	5	0	0	0	0.016758	4	3003	3003;3015;3026;3038		153.04	65.282	1	12653000			20211	8496	14036	14063	23046;23047;23048;23049	23046					-0.019962973501833403
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2431335449219	2	492.243264	982.471974	-0.16378	-8.062E-05	-0.56052	-0.00027591	-0.7243	-0.00035653	492.24297455212337	37.434	1.5799	37.466	36.756	38.336	0.032269					98	42	5	0	0	0	0.043667	5	2998	2976;2987;2998;3011;3024		131.03	43.277	1	11895000			20212	8496	14036	14063	23050;23051;23052;23053;23054	23052					-0.019962973501833403
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.2428283691406	2	492.243264	982.471974	-0.43999	-0.00021658	0.31953	0.00015729	-0.12046	-5.9294E-05	492.2433972172003	37.522	0.64881	37.329	37.076	37.725	-0.193					44	16	4	0	0	0	0.043667	2	3020	3020;3032		131.03	43.277	1	1790800			20213	8496	14036	14063	23055;23056	23055					-0.019962973501833403
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2431640625	2	492.243264	982.471974	-0.95185	-0.00046854	0.83072	0.00040892	-0.12113	-5.9626E-05	492.24361634119083	37.513	0.61419	37.294	37.037	37.651	-0.2195					46	15	5	0	0	0	0.043667	1	3018	3018		131.03	48.791	1	1688100			20214	8496	14036	14063	23057	23057					-0.019962973501833403
GLQEGTHEL	9	Unmodified	_GLQEGTHEL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.2426452636719	2	492.243264	982.471974	-0.65371	-0.00032178	0.53144	0.0002616	-0.12227	-6.0185E-05	492.24344231462464	37.544	0.69078	37.335	37.037	37.728	-0.2092					48	17	4	0	0	0	0.043667	2	3012	2999;3012		131.03	43.277	1	1666000			20215	8496	14036	14063	23058;23059	23059					-0.019962973501833403
GLQEVAEQL	9	Unmodified	_GLQEVAEQL_					0	0	0		nc|ENSG00000198791|Q9UIV1-2|CNOT7;ENSG00000198791|ENST00000361272|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	nc|ENSG00000198791|Q9UIV1-2|CNOT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2730712890625	2	493.761289	985.508025	-0.12237	-6.0422E-05	2.985	0.0014739	2.8626	0.0014134	493.7634946704847	22.451	0.69745	22.451	22.06	22.757	0					26	14	2	0	0	0	0.024447	1	806	806		19.104	4.2386	1	102090			20216	10200	14037	14064	23060	23060					0.014691598266608707
GLQKEIAEL	9	Unmodified	_GLQKEIAEL_					0	0	0		FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant;FOSL2|p.R199Afs*22|1|0.32|ENSG00000075426|chr2:28412057-28412058|-/GC|frameshift_variant;FOSL2|p.P201Qfs*31|1|0.26|ENSG00000075426|chr2:28412032-28412033|-/CAGTGTGCAAGATTAGCCCCGAGGAGCGCCGATCG|frameshift_variant;FOSL2|p.P202Afs*52|1|0.2|ENSG00000075426|chr2:28412069-28412082|CCCCAGCCCCTGGG/-|frameshift_variant;nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2	FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant	FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7868957519531	2	500.787307	999.560061	0.095134	4.7642E-05	0.41898	0.00020982	0.51411	0.00025746	500.786959413394	54.915	1.1172	54.915	54.492	55.61	0					125	31	6	0	0	0	0.12914	2	6053	6040;6053		104.06	10.861	1	4814600			20217	1559	14038	14065	23061;23062	23062					0.060263232404167866
GLQKEIAEL	9	Unmodified	_GLQKEIAEL_					0	0	0		FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant;FOSL2|p.R199Afs*22|1|0.32|ENSG00000075426|chr2:28412057-28412058|-/GC|frameshift_variant;FOSL2|p.P201Qfs*31|1|0.26|ENSG00000075426|chr2:28412032-28412033|-/CAGTGTGCAAGATTAGCCCCGAGGAGCGCCGATCG|frameshift_variant;FOSL2|p.P202Afs*52|1|0.2|ENSG00000075426|chr2:28412069-28412082|CCCCAGCCCCTGGG/-|frameshift_variant;nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2	FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant	FOSL2|p.I193Mfs*24|1|0.3|ENSG00000075426|chr2:28412046-28412055|TAGCCCCGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7872619628906	2	500.787307	999.560061	-0.22719	-0.00011377	0.65163	0.00032633	0.42444	0.00021255	500.7871347341914	55.031	1.3379	54.88	54.409	55.747	-0.15036					142	37	6	0	0	0	0.12914	2	6040	6026;6040		104.06	23.602	1	4169000			20218	1559	14038	14065	23063;23064	23064					0.060263232404167866
GLQKRSRRKH	10	Unmodified	_GLQKRSRRKH_					0	0	0		ENST00000559454.5_1_15:49462693-49462759:+|nuORF	ENST00000559454.5_1_15:49462693-49462759:+|nuORF	ENST00000559454.5_1_15:49462693-49462759:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.59246826171875	3	422.593566	1264.75887	-0.0027145	-1.1471E-06	-2.0117	-0.00085012	-2.0144	-0.00085127	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	1.118	1	5130	5130		20.03	0.7678	1	16177000			20219	16779	14039	14066	23065	23065					0.13708021382512925
GLQLARGRT	9	Unmodified	_GLQLARGRT_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2905578613281	2	486.290882	970.567212	-1.2589	-0.00061219	-0.024018	-1.1679E-05	-1.2829	-0.00062387	486.2909805729049	27.4	2.2661	27.481	27.064	29.33	0.081293					128	57	5	0	0	0	0.59099	1	1486	1486		53.351	7.3995	1	43649000			20220	351	14040	14067	23066	23066					0.08075100631526766
GLQLLLKKG	9	Unmodified	_GLQLLLKKG_					0	0	0			REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2905578613281	2	485.326402	968.638252	-0.76951	-0.00037347	1.1459	0.00055612	0.37636	0.00018266	485.3266527830011	27.77	0.27322	27.77	27.689	27.963	0					10	6	2	0	0	0	0.022924	1	1566	1566		53.351	0	1	49089	+		20221	33824	14041	14068	23067	23067					0.1526780061633417
GLQLLLKKG	9	Unmodified	_GLQLLLKKG_					0	0	0			REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	REV__ENST00000496384.6_2_7:140425901-140426006:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29046630859375	2	485.326402	968.638252	-0.53135	-0.00025788	1.2527	0.00060795	0.72131	0.00035007	485.32689614013765	27.843	0.34802	27.839	27.581	27.929	-0.0042019					11	8	2	0	0	0	0.024323	1	1564	1564		63.306	4.5243	1	35087	+		20222	33824	14041	14068	23068	23068					0.1526780061633417
GLQLPPYAP	9	Unmodified	_GLQLPPYAP_					0	0	0		ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	ENSG00000251493|ENST00000615637|FOXD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.79254150390625	2	478.26601	954.517468	0.82671	0.00039539	2.5269	0.0012085	3.3536	0.0016039	478.26704485154914	51.084	0.76132	51.084	50.74	51.501	0					54	20	4	0	0	0	0.024354	1	5354	5354		47.916	23.713	1	1458000			20223	10854	14042	14069	23069	23069					0.038389729028381225
GLQPGDIVL	9	Unmodified	_GLQPGDIVL_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.2634582519531	2	456.263468	910.512382	0.38101	0.00017384	-0.18159	-8.2853E-05	0.19942	9.0988E-05	456.2632203086326	63.734	1.0277	63.476	63.122	64.15	-0.25824					59	26	4	0	0	0	0.15889	1	7201	7201		97.473	5.2821	1	3062900			20224	3633	14043	14070	23070	23070					0.053546690402299646
GLQQELAAL	9	Unmodified	_GLQQELAAL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7668151855469	2	471.766374	941.518196	0.86819	0.00040958	-0.36257	-0.00017105	0.50562	0.00023853	471.7658709209255	77.1	1.4857	77.1	76.556	78.042	0					77	35	3	0	0	0	0.016871	3	9485	9476;9485;9496		152.47	40.822	1	7851600			20225	2158	14044	14071	23071;23072;23073	23072					0.04509767551905952
GLQQELAAL	9	Unmodified	_GLQQELAAL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7654724121094	2	471.766374	941.518196	0.29189	0.00013771	0.12743	6.0119E-05	0.41933	0.00019782	471.7661586281301	77.318	1.4534	77.107	76.544	77.997	-0.21087					73	34	3	0	0	0	0.057894	3	9469	9469;9479;9490		125.81	38.118	1	7961200			20226	2158	14044	14071	23074;23075;23076	23074					0.04509767551905952
GLQQELAAL	9	Unmodified	_GLQQELAAL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.76593017578125	2	471.766374	941.518196	0.51811	0.00024443	-0.060531	-2.8556E-05	0.45758	0.00021587	471.7660695175484	77.138	1.5805	77.152	76.532	78.112	0.013504					76	37	3	0	0	0	0.016146	3	9407	9397;9407;9418		197.6	78.857	1	7393600			20227	2158	14044	14071	23077;23078;23079	23078					0.04509767551905952
GLQQLARL	8	Unmodified	_GLQQLARL_					0	0	0			REV__ENST00000526142.5_1_11:428365-428637:-|nuORF	REV__ENST00000526142.5_1_11:428365-428637:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7572937011719	2	449.777077	897.5396	-0.16207	-7.2897E-05	0.11558	5.1985E-05	-0.046494	-2.0912E-05	449.7770023111232	20.209	0.63336	20.104	19.791	20.424	-0.10477					21	12	2	0	0	0	0.027866	1	514	514		12.959	0	1	80092	+		20228	34434	14045	14072	23080	23080					0.08673197371274455
GLQSTPFTL	9	Unmodified	_GLQSTPFTL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7621154785156	2	482.260925	962.507297	0.34821	0.00016793	-0.41225	-0.00019881	-0.064042	-3.0885E-05	482.2606330741255	87.203	2.5776	87.168	86.65	89.227	-0.035362					149	61	4	0	0	0	0.35646	1	10951	10951		68.787	4.5796	1	2044800			20229	9292	14046	14073	23081	23081					0.024543651776411934
GLRAGKPTAS	10	Unmodified	_GLRAGKPTAS_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2773742675781	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	1.118	1	10045	10045		30.318	2.4355	1	7774800			20230	12	14047	14074	23082	23082					0.06031992020302823
GLRAGKPTAS	10	Unmodified	_GLRAGKPTAS_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	479.27740478515625	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.348	1	86.161	85.661	86.661	-0.18696								0	0	0	0.73925	1	10472	10472		35.152	3.6222	1				20231	12	14047	14074	23083	23083					0.06031992020302823
GLRAGKPTAS	10	Unmodified	_GLRAGKPTAS_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27752685546875	2	479.277441	956.540328	0.1691	8.1046E-05	-0.42382	-0.00020313	-0.25472	-0.00012208	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	1.118	1	9769	9769		30.318	1.1477	1	1990900			20232	12	14047	14074	23084	23084					0.06031992020302823
GLRAGKPTAS	10	Unmodified	_GLRAGKPTAS_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2771911621094	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	1.118	1	10158	10158		30.318	0	1	7407200			20233	12	14047	14074	23085	23085					0.06031992020302823
GLRAGKSH	8	Unmodified	_GLRAGKSH_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2371826171875	2	413.238119	824.461684	0.092708	3.831E-05	0.22556	9.3211E-05	0.31827	0.00013152	413.23811756919946	76.351	3.9324	76.183	74.993	78.925	-0.16853					174	94	3	0	0	0	0.97794	1	9082	9082		40.778	5.5774	1	809840	+		20234	26705	14048	14075	23086	23086					0.04243184505889985
GLRAPILT	8	Unmodified	_GLRAPILT_					0	0	0			REV__nc|ENSG00000156475|Q00005-7|PPP2R2B	REV__nc|ENSG00000156475|Q00005-7|PPP2R2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	420.76872	839.522887	2.0961	0.00088199	-1.8426	-0.00077532	0.25352	0.00010667	420.76790317216785	23.654	0.62652	23.463	23.167	23.794	-0.19117					21	14	2	0	0	0	0.027866	1	951	951		26.796	12.132	1	149840	+		20235	36807	14049	14076	23087	23087					0.09670696485306962
GLRDRPSI	8	Unmodified	_GLRDRPSI_					0	0	0		ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2644348144531	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.96769	1	10106	10106		42.396	3.59	1	3048400			20236	3939	14050	14077	23088	23088					0.054357228488470355
GLRGLLHL	8	Unmodified	_GLRGLLHL_					0	0	0		ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.26605224609375	2	439.782162	877.549771	0.41829	0.00018396	-0.41343	-0.00018182	0.0048614	2.138E-06	439.781828749942	43.481	0.50859	43.512	43.267	43.775	0.030827					22	13	2	0	0	0	0.027866	1	4020	4020		33.516	0	1	323580			20237	7845	14051	14078	23089	23089					0.1060980509652154
GLRKGHGT	8	Unmodified	_GLRKGHGT_					0	0	0		nc|ENSG00000130720|Q8N539-2|FIBCD1;ENSG00000130720|ENST00000372338|FIBCD1	nc|ENSG00000130720|Q8N539-2|FIBCD1	nc|ENSG00000130720|Q8N539-2|FIBCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2374267578125	2	413.238119	824.461684	-0.035551	-1.4691E-05	0.35429	0.00014641	0.31874	0.00013172	413.2381660612718	76.315	4.9174	76.047	73.925	78.842	-0.26806					200	118	3	0	0	0	1.0106	2	9122	9071;9122		35.618	6.4687	1	1178700			20238	4446	14052	14079	23090;23091	23091					0.04243184505912723
GLRKIIVRVLL	11	Unmodified	_GLRKIIVRVLL_					0	0	0		ENST00000464167.5_1_3:197676878-197677004:+|nuORF	ENST00000464167.5_1_3:197676878-197677004:+|nuORF	ENST00000464167.5_1_3:197676878-197677004:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	427.302734375	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.26	1	70.045	69.545	70.545	-0.21425								0	0	0	1.5301	1	8170	8170		14.086	8.085	1				20239	14752	14053	14080	23092	23092					0.25807349203978447
GLRKKVTAM	9	Unmodified	_GLRKKVTAM_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.3072509765625	2	502.307687	1002.60082	0.30904	0.00015523	-0.7453	-0.00037437	-0.43626	-0.00021914	502.3072150906336	23.24	0.4993	23.038	22.78	23.279	-0.20193					19	10	2	0	0	0	0.72875	1	913	913		44.117	5.3107	1	755490			20240	2053	14054	14081	23093	23093					0.09962386079064345
GLRKKVTAM	9	Unmodified	_GLRKKVTAM_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.306884765625	2	502.307687	1002.60082	-0.44625	-0.00022416	0.26129	0.00013125	-0.18496	-9.2908E-05	502.3076697297309	23.27	0.60501	23.09	22.79	23.395	-0.17989					27	13	3	0	0	0	0.50848	1	894	894		58.782	16.307	1	922200			20241	2053	14054	14081	23094	23094					0.09962386079064345
GLRKKVTAM	9	Unmodified	_GLRKKVTAM_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.306884765625	2	502.307687	1002.60082	1.3259	0.00066603	-1.5569	-0.00078205	-0.23098	-0.00011602	502.3067288742527	23.292	0.43356	23.101	22.851	23.284	-0.19117					27	9	4	0	0	0	0.72875	1	875	875		44.117	8.4985	1	828360			20242	2053	14054	14081	23095	23095					0.09962386079064345
GLRKKVTAM	9	Oxidation (M)	_GLRKKVTAM(Oxidation (M))_		GLRKKVTAM(1)		GLRKKVTAM(100)	0	0	1		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.304931640625	2	510.305144	1018.59573	0.44507	0.00022712	-0.54692	-0.0002791	-0.10185	-5.1975E-05	510.3047198234141	19.086	1.4232	18.882	18.609	20.032	-0.20371					68	28	3	0	0	0	0.12602	2	375	375;390		104.75	37.253	1	631870			20243	2053	14054	14082	23096;23097	23096		75			0.08718082216455514
GLRKKVTAM	9	Oxidation (M)	_GLRKKVTAM(Oxidation (M))_		GLRKKVTAM(1)		GLRKKVTAM(64)	0	0	1		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.3052673339844	2	510.305144	1018.59573	1.843	0.0009405	-1.9424	-0.0009912	-0.099349	-5.0698E-05	510.3040118032133	19.087	2.5157	18.853	18.533	21.048	-0.23345					85	50	3	0	0	0	0.42604	1	358	358		64.207	14.766	1	695710			20244	2053	14054	14082	23098	23098		75			0.08718082216455514
GLRKTHKTLII	11	Unmodified	_GLRKTHKTLII_					0	0	0		ENST00000502271.5_1_5:53181920-53182097:-|nuORF	ENST00000502271.5_1_5:53181920-53182097:-|nuORF	ENST00000502271.5_1_5:53181920-53182097:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2648620605469	3	427.278473	1278.81359	-0.14092	-6.0213E-05	-3.8103	-0.001628	-3.9512	-0.0016883	427.61236814376764	54.791	0.20784	54.641	54.574	54.782	-0.15036					8	5	2	0	0	0	0.024823	1	6003	6003		21.032	3.1991	1	60588			20245	15663	14055	14083	23099	23099					0.1853359541057671
GLRKTHKTLII	11	Unmodified	_GLRKTHKTLII_					0	0	0		ENST00000502271.5_1_5:53181920-53182097:-|nuORF	ENST00000502271.5_1_5:53181920-53182097:-|nuORF	ENST00000502271.5_1_5:53181920-53182097:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	427.278473	1278.81359	-0.30138	-0.00012877	-7.1664	-0.003062	-7.4678	-0.0031908	427.2750560919268	54.927	0.11284	54.927	54.831	54.944	0	0.14326	-0.0023797	NaN	15.921	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41703			20246	15663	14055	14083							0.1853359541057671
GLRNPRRL	8	Unmodified	_GLRNPRRL_					0	0	0		ENST00000265343.9_1_5:132299023-132299215:-|nuORF	ENST00000265343.9_1_5:132299023-132299215:-|nuORF	ENST00000265343.9_1_5:132299023-132299215:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2908935546875	2	491.306867	980.599181	0.70879	0.00034823	-0.7107	-0.00034917	-0.0019109	-9.3884E-07	491.3063924560536	20.54	0.49193	20.609	20.464	20.956	0.068901					14	9	2	0	0	0	0.027866	1	504	504		25.45	0	1	31834			20247	11589	14056	14084	23100	23100					0.10810513105309383
GLRNSPLPARP	11	Unmodified	_GLRNSPLPARP_					0	0	0			REV__ENST00000548483.5_2_12:94288230-94288398:+|nuORF	REV__ENST00000548483.5_2_12:94288230-94288398:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3431396484375	2	589.343646	1176.67274	-1.3447	-0.00079247	-0.0816	-4.809E-05	-1.4263	-0.00084056	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0075	1	11698	11698		35.152	3.6222	1	13724000	+		20248	34878	14057	14085	23101	23101					0.09147016757128767
GLRPGTGLATL	11	Unmodified	_GLRPGTGLATL_					0	0	0		ENST00000527696.5_1_11:209264-209561:+|nuORF;ENST00000532373.1_1_11:208854-209561:+|nuORF	ENST00000527696.5_1_11:209264-209561:+|nuORF	ENST00000527696.5_1_11:209264-209561:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2733764648438	2	528.314023	1054.61349	-0.58196	-0.00030746	-3.367	-0.0017789	-3.949	-0.0020863	528.8106449911032	91.981	0.2182	91.858	91.717	91.935	-0.12241					11	4	3	0	0	0	0.024771	1	11297	11297		21.686	0	1	29855			20249	16160	14058	14086	23102	23102					0.08837120742964544
GLRPRPRASP	10	Unmodified	_GLRPRPRASP_					0	0	0			REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|8|1|sense	REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|8|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.82861328125	2	553.830706	1105.64686	-0.79305	-0.00043922	-0.54011	-0.00029913	-1.3332	-0.00073835	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0992	1	11141	11141		32.812	3.6629	1	6583300	+		20250	37651	14059	14087	23103	23103					0.09826167305504896
GLRQHPLKATG	11	Unmodified	_GLRQHPLKATG_					0	0	0			REV__SYNE2-ITPK1|1|fusion	REV__SYNE2-ITPK1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3432006835938	2	589.343646	1176.67274	-1.1102	-0.00065427	-0.23125	-0.00013629	-1.3414	-0.00079055	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	1.0392	1	11579	11579		28.081	2.9555	1	4794700	+		20251	37668	14060	14088	23104	23104					0.09147016757128767
GLRRALRRLLP	11	Unmodified	_GLRRALRRLLP_					0	0	0			REV__ENSG00000262179|ENST00000573382|MYMX	REV__ENSG00000262179|ENST00000573382|MYMX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.7662048339844	3	440.961478	1319.86261	-1.165	-0.00051374	0.97781	0.00043117	-0.18724	-8.2564E-05	441.29722628953664	37.432	0.11901	37.213	37.152	37.271	-0.2195					4	2	2	0	0	0	0.024869	1	3003	3003		14.694	0.60766	1	26438	+		20252	29119	14061	14089	23105	23105					0.21546928490170103
GLRRGVVE	8	Unmodified	_GLRRGVVE_					0	0	0			REV__ENST00000309775.8_1_11:65222922-65233671:+|nuORF	REV__ENST00000309775.8_1_11:65222922-65233671:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2668151855469	2	443.266876	884.519199	-0.55397	-0.00024556	0.5283	0.00023418	-0.025672	-1.1379E-05	443.2670353906837	29.431	1.1385	29.509	29.202	30.341	0.078344					83	27	4	0	0	0	0.97924	1	1769	1769		40.573	1.5511	1	3748000	+		20253	30167	14062	14090	23106	23106					0.07232026711471917
GLRRPVTT	8	Unmodified	_GLRRPVTT_					0	0	0			REV__ENSG00000137154|ENST00000380394|RPS6	REV__ENSG00000137154|ENST00000380394|RPS6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2744445800781	2	450.274701	898.534849	-1.3767	-0.00061991	0.3574	0.00016093	-1.0193	-0.00045898	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0574	1	11329	11329		24.203	1.1603	1	56225000	+		20254	23730	14063	14091	23107	23107					0.08152313228504227
GLRRSPSL	8	Unmodified	_GLRRSPSL_					0	0	0		ENST00000457823.6_1_4:95129002-95129140:+|nuORF	REV__ENSG00000162365|ENST00000371891|CYP4A22	REV__ENSG00000162365|ENST00000371891|CYP4A22	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2668762207031	2	443.266876	884.519199	-1.2272	-0.00054396	1.1889	0.00052702	-0.038225	-1.6944E-05	443.2673390486623	29.675	1.1838	29.675	29.408	30.592	0					79	28	4	0	0	0	0.88442	1	1854	1854		52.299	2.2746	1	3341100			20255	25427	14064	14092	23108	23108					0.07232026711460549
GLRSGSVAAPL	11	Unmodified	_GLRSGSVAAPL_					0	0	0			REV__ENSG00000133937|ENST00000238558|GSC	REV__ENSG00000133937|ENST00000238558|GSC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.2985229492188	2	514.298373	1026.58219	0.55643	0.00028617	-1.2442	-0.00063989	-0.68777	-0.00035372	514.2974943917296	95.261	0.95751	95.138	94.684	95.642	-0.12251					58	21	4	0	0	0	0.96599	1	11763	11763		44.377	8.7589	1	1848500	+		20256	23403	14065	14093	23109	23109					0.06996547708831713
GLRSRLAGLRL	11	Unmodified	_GLRSRLAGLRL_					0	0	0			REV__nc|ENSG00000108469|O94762-4|RECQL5	REV__nc|ENSG00000108469|O94762-4|RECQL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.3864135742188	2	606.388388	1210.76222	0.024308	1.474E-05	-0.95636	-0.00057992	-0.93205	-0.00056518	606.3876290110409	107.33	0.41655	107.33	107.05	107.47	0					21	9	3	0	0	0	0.95882	1	13785	13785		45.972	3.108	1	154450	+		20257	21738	14066	14094	23110	23110					0.16527271436507363
GLRTEQVHDRI	11	Unmodified	_GLRTEQVHDRI_					0	0	0			REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.26556396484375	3	441.909109	1322.7055	-0.6739	-0.0002978	0.89097	0.00039373	0.21707	9.5924E-05	441.9093927474165	39.39	0.52586	39.291	39.091	39.616	-0.098755					33	14	3	0	0	0	0.024751	1	3349	3349		41.08	0	1	558130	+		20258	20173	14067	14095	23111	23111					0.057051790893410725
GLRVCARLL	9	Unmodified	_GLRVCARLL_					0	0	0		ENST00000417775.5_1_1:75198858-75199044:-|nuORF	ENST00000417775.5_1_1:75198858-75199044:-|nuORF	ENST00000417775.5_1_1:75198858-75199044:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.80767822265625	2	500.807854	999.601155	-1.3079	-0.00065499	0.96021	0.00048088	-0.34765	-0.00017411	500.8079761337237	107.13	0.42548	107	106.83	107.25	-0.1346					28	15	3	0	0	0	0.90698	1	13316	13316		31.955	3.7006	1	191510			20259	13920	14068	14096	23112	23112					0.10133805798921003
GLRVRGKVATE	11	Unmodified	_GLRVRGKVATE_					0	0	0		ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.3114624023438	2	593.356754	1184.69895	-0.23126	-0.00013722	-0.0096125	-5.7036E-06	-0.24088	-0.00014293	593.3566061726256	18.936	0.4938	18.732	18.559	19.053	-0.20371					17	9	3	0	0	0	0.02483	1	342	342		19.997	2.6318	1	68409			20260	14611	14069	14097	23113	23113					0.1139928592860997
GLRVRGKVATE	11	Unmodified	_GLRVRGKVATE_					0	0	0		ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	593.356754	1184.69895	0.75067	0.00044542	-1.4483	-0.00085936	-0.69764	-0.00041395	593.3558815331987	18.65	0.24466	18.65	18.529	18.774	0	-0.062475	-0.0011065	NaN	19.997	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20117			20261	14611	14069	14097							0.1139928592860997
GLRVRGKVATE	11	Unmodified	_GLRVRGKVATE_					0	0	0		ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	593.356754	1184.69895	0.025642	1.5215E-05	-0.32967	-0.00019561	-0.30403	-0.0001804	593.3563982333661	18.874	0.39471	18.717	18.544	18.939	-0.15637	0.0049199	0.000221	NaN	19.997	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96372			20262	14611	14069	14097							0.1139928592860997
GLRVRGKVATE	11	Unmodified	_GLRVRGKVATE_					0	0	0		ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	ENST00000457408.6_3_7:44617991-44618162:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	593.356754	1184.69895	1.8115	0.0010749	-1.4639	-0.00086862	0.34759	0.00020624	593.3556119610905	18.983	0.39544	18.75	18.533	18.928	-0.23345	0.037552	-0.001125	NaN	19.997	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66164			20263	14611	14069	14097							0.1139928592860997
GLSAAVRLK	9	Unmodified	_GLSAAVRLK_					0	0	0		ENSG00000171503|ENST00000511912|ETFDH;nc|ENSG00000171503|Q16134-3|ETFDH;ENST00000514148.1_1_4:159603282-159605833:+|nuORF	ENSG00000171503|ENST00000511912|ETFDH	ENSG00000171503|ENST00000511912|ETFDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.79327392578125	2	457.792727	913.5709	4.4462	0.0020354	-3.8119	-0.0017451	0.63425	0.00029036	457.79075160591765	18.401	0.28944	18.464	18.261	18.55	0.063307					9	5	2	0	0	0	0.87448	1	247	247		34.173	2.2177	1	31448			20264	8163	14070	14098	23114	23114					0.11065770405366493
GLSDLRLEL	9	Unmodified	_GLSDLRLEL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2930603027344	2	508.292756	1014.57096	1.5141	0.00076962	-1.1116	-0.00056504	0.40249	0.00020458	508.29192836925563	74.151	1.242	74.151	73.913	75.155	0					68	29	3	0	0	0	0.025498	4	9065	9056;9065;9077;9088		145.16	46.574	1	7176500			20265	4534	14071	14099	23115;23116;23117;23118	23116					0.06425725614690236
GLSDLRLEL	9	Unmodified	_GLSDLRLEL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2928161621094	2	508.292756	1014.57096	0.25537	0.0001298	1.0516	0.00053453	1.307	0.00066433	508.29247527723675	74.441	1.345	74.182	73.944	75.289	-0.25887					96	32	5	0	0	0	0.071379	4	9088	9064;9075;9088;9101		120.87	35.504	1	6869300			20266	4534	14071	14099	23119;23120;23121;23122	23121					0.06425725614690236
GLSDLRLEL	9	Unmodified	_GLSDLRLEL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.292724609375	2	508.292756	1014.57096	-0.6292	-0.00031982	1.7571	0.00089313	1.1279	0.00057331	508.2928982004938	74.194	1.4011	74.204	73.924	75.325	0.0096512					82	33	4	0	0	0	0.041068	4	8985	8985;8993;9005;9017		132.76	47.842	1	6864000			20267	4534	14071	14099	23123;23124;23125;23126	23123					0.06425725614690236
GLSDLRLEL	9	Unmodified	_GLSDLRLEL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.292756	1014.57096	0.11972	6.085E-05	1.1117	0.00056506	1.2314	0.00062591	508.29262795150856	74.451	0.6768	74.175	74.001	74.678	-0.27573	0.027763	0.0012148	NaN	145.16	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325260			20268	4534	14071	14099							0.06425725614690236
GLSDLRLEL	9	Unmodified	_GLSDLRLEL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.292756	1014.57096	0.074536	3.7886E-05	0.61334	0.00031175	0.68787	0.00034964	508.29303983088965	74.383	1.1039	74.12	73.966	75.07	-0.26326	-0.027116	0.00070822	NaN	145.16	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553620			20269	4534	14071	14099							0.06425725614690236
GLSDLRLEL	9	Unmodified	_GLSDLRLEL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.292756	1014.57096	0.33817	0.00017189	-0.63798	-0.00032428	-0.2998	-0.00015239	508.2923455372701	74.234	0.77959	74.052	73.859	74.639	-0.18279	-0.095522	-0.00056385	NaN	145.16	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516890			20270	4534	14071	14099							0.06425725614690236
GLSERDINL	9	Unmodified	_GLSERDINL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7723388671875	2	508.772188	1015.52982	-0.42184	-0.00021462	0.35675	0.0001815	-0.065099	-3.3121E-05	508.772265549331	52.01	0.84204	51.862	51.406	52.248	-0.14735					54	23	4	0	0	0	0.22902	1	5529	5529		85.161	2.8558	1	4391200			20271	7528	14072	14100	23127	23127					0.02267964575219139
GLSETILAV	9	Unmodified	_GLSETILAV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.76287841796875	2	451.7633	901.512048	0.61082	0.00027595	-0.45056	-0.00020355	0.16027	7.2402E-05	451.7629961669622	77.235	0.7174	77.235	76.955	77.672	0					48	16	4	0	0	0	0.013018	4	9527	9527;9539;9549;9563		190.71	52.23	1	3552400			20272	3304	14073	14101	23128;23129;23130;23131	23128					0.057352493203779886
GLSETILAV	9	Unmodified	_GLSETILAV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.76324462890625	2	451.7633	901.512048	0.26732	0.00012077	-0.0023495	-1.0614E-06	0.26497	0.00011971	451.7631551394664	77.433	0.67052	77.222	76.954	77.624	-0.21087					44	15	4	0	0	0	0.013018	4	9529	9517;9529;9540;9553		173.85	40.38	1	3502400			20273	3304	14073	14101	23132;23133;23134;23135	23133					0.057352493203779886
GLSETILAV	9	Unmodified	_GLSETILAV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.76312255859375	2	451.7633	901.512048	0.079597	3.5959E-05	0.14272	6.4477E-05	0.22232	0.00010044	451.76324360731024	77.251	0.71786	77.265	76.978	77.696	0.013504					50	16	4	0	0	0	0.013018	4	9467	9446;9456;9467;9481		183.89	45.415	1	3947800			20274	3304	14073	14101	23136;23137;23138;23139	23138					0.057352493203779886
GLSETILAV	9	Unmodified	_GLSETILAV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.7631530761719	2	451.7633	901.512048	0.47243	0.00021343	-0.35805	-0.00016176	0.11438	5.1672E-05	451.7630631860063	77.475	0.56815	77.213	77.003	77.571	-0.26202					31	13	3	0	0	0	0.028181	2	9214	9201;9214		143.02	19.031	1	1228000			20275	3304	14073	14101	23140;23141	23141					0.057352493203779886
GLSETILAV	9	Unmodified	_GLSETILAV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.76312255859375	2	451.7633	901.512048	0.87857	0.00039691	-0.64653	-0.00029208	0.23205	0.00010483	451.7629140452854	77.461	0.58015	77.219	76.952	77.532	-0.24232					33	14	3	0	0	0	0.0146	2	9228	9217;9228		163.84	49.258	1	1209700			20276	3304	14073	14101	23142;23143	23143					0.057352493203779886
GLSETILAV	9	Unmodified	_GLSETILAV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.76287841796875	2	451.7633	901.512048	-0.33868	-0.000153	0.63546	0.00028708	0.29678	0.00013408	451.7633904035265	77.34	0.66515	77.179	76.946	77.611	-0.16196					33	15	3	0	0	0	0.021668	2	9188	9188;9202		148.21	39.463	1	1223000			20277	3304	14073	14101	23144;23145	23144					0.057352493203779886
GLSKSPLN	8	Unmodified	_GLSKSPLN_					0	0	0			REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.73236083984375	2	408.23471	814.454868	0.23486	9.5878E-05	0.39649	0.00016186	0.63135	0.00025774	408.23467787911375	31.633	0.8595	31.645	31.084	31.943	0.011797					40	20	3	0	0	0	0.027866	1	2036	2036		19.36	0	1	1092600	+		20278	35423	14074	14102	23146	23146					0.040218268346734476
GLSKSPLN	8	Unmodified	_GLSKSPLN_					0	0	0			REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	408.23471	814.454868	0.95943	0.00039167	-0.36191	-0.00014774	0.59752	0.00024393	408.234355787962	31.28	0.72925	31.349	30.997	31.726	0.068962	-0.14771	-0.0002679	NaN	12.959	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970900	+		20279	35423	14074	14102							0.040218268346734476
GLSLLRAVA	9	Unmodified	_GLSLLRAVA_					0	0	0		ENST00000596373.1_1_19:53686195-53696578:-|nuORF	ENST00000596373.1_1_19:53686195-53696578:-|nuORF	ENST00000596373.1_1_19:53686195-53696578:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2871398925781	2	450.287277	898.560001	-0.79015	-0.0003558	0.80153	0.00036092	0.011377	5.1228E-06	450.2875030380692	37.201	1.127	36.982	36.488	37.615	-0.2195					75	28	4	0	0	0	0.25032	1	2971	2971		82.305	5.4584	1	3254200			20280	17432	14075	14103	23147	23147					0.10666368031081674
GLSLLRSR	8	Unmodified	_GLSLLRSR_					0	0	0			REV__ENST00000321027.7_3_2:75929435-75937941:-|nuORF	REV__ENST00000321027.7_3_2:75929435-75937941:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2539367675781	2	451.282526	900.550499	-0.19974	-9.0141E-05	-3.0885	-0.0013938	-3.2882	-0.0014839	451.28114974611515	20.317	0.4919	20.212	20.03	20.522	-0.10477					16	9	2	0	0	0	0.027866	1	542	542		37.159	6.6555	1	59679	+		20281	30341	14076	14104	23148	23148					0.09624599745563955
GLSLNWKVP	9	Unmodified	_GLSLNWKVP_					0	0	0		nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5;ENSG00000100341|ENST00000216177|PNPLA5	nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.8131103515625	2	507.292559	1012.57057	-0.092759	-4.7056E-05	-0.95392	-0.00048391	-1.0467	-0.00053097	507.2906366523411	92.926	0.46818	92.934	92.629	93.097	0.0077286					13	10	2	0	0	0	0.024436	1	11734	11734		23.042	0	1	57744			20282	2183	14077	14105	23149	23149					0.06478350685517853
GLSLRMVPP	9	Unmodified	_GLSLRMVPP_					0	0	0		ENSG00000114735|ENST00000232854|HEMK1;ENST00000448997.5_1_3:50608680-50617422:+|nuORF	ENSG00000114735|ENST00000232854|HEMK1	ENSG00000114735|ENST00000232854|HEMK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2829284667969	2	485.281137	968.547722	-0.77197	-0.00037462	4.0786	0.0019792	3.3066	0.0016046	485.2831968858641	21.498	1.9183	21.569	21.057	22.975	0.071487					104	39	5	0	0	0	0.80658	1	616	616		38.806	0.99462	1	9782400			20283	3377	14078	14106	23150	23150					0.06219008296386619
GLSNHIAAL	9	Unmodified	_GLSNHIAAL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2536926269531	2	448.253434	894.492316	0.38482	0.0001725	-0.51071	-0.00022893	-0.12589	-5.643E-05	448.25314640340076	49.1	1.0448	49.1	48.761	49.805	0					84	28	5	0	0	0	0.082191	2	5066	5053;5066		116.9	23.708	1	8590500			20284	6550	14079	14107	23151;23152	23152					0.04084918100284085
GLSNHIAAL	9	Unmodified	_GLSNHIAAL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2535705566406	2	448.253434	894.492316	-0.0040973	-1.8366E-06	-0.16343	-7.3259E-05	-0.16753	-7.5095E-05	448.253291429776	49.316	1.1993	49.164	48.864	50.064	-0.15277					89	32	5	0	0	0	0.047345	3	5080	5065;5080;5093		129.68	47.378	1	8477300			20285	6550	14079	14107	23153;23154;23155	23154					0.04084918100284085
GLSNHIAAL	9	Unmodified	_GLSNHIAAL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.25390625	2	448.253434	894.492316	-1.1189	-0.00050154	0.94862	0.00042522	-0.17026	-7.6321E-05	448.25377321939305	48.994	1.244	49.068	48.772	50.016	0.074192					86	33	5	0	0	0	0.11092	1	4986	4986		108.09	25.782	1	7138000			20286	6550	14079	14107	23156	23156					0.04084918100284085
GLSNHIAAL	9	Unmodified	_GLSNHIAAL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	448.253434	894.492316	-0.44644	-0.00020012	0.086983	3.899E-05	-0.35945	-0.00016113	448.25337446834095	49.082	0.76117	48.981	48.655	49.416	-0.1008	-0.08929	6.336E-05	NaN	129.68	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636740			20287	6550	14079	14107							0.04084918100284085
GLSNHIAAL	9	Unmodified	_GLSNHIAAL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	448.253434	894.492316	-0.10889	-4.8809E-05	-0.011999	-5.3787E-06	-0.12089	-5.4188E-05	448.2532821890515	49.36	0.57377	49.08	48.861	49.434	-0.27977	0.0099952	-2.5378E-05	NaN	129.68	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617590			20288	6550	14079	14107							0.04084918100284085
GLSNHIAAL	9	Unmodified	_GLSNHIAAL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	448.253434	894.492316	-0.029873	-1.339E-05	-0.24081	-0.00010794	-0.27068	-0.00012133	448.2532517754844	49.212	0.7579	49.03	48.773	49.531	-0.18206	-0.040206	-0.00023051	NaN	129.68	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617080			20289	6550	14079	14107							0.04084918100284085
GLSPDSPQ	8	Unmodified	_GLSPDSPQ_					0	0	0			REV__ENSG00000133393|ENST00000255759|CEP20	REV__ENSG00000133393|ENST00000255759|CEP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2037048339844	2	400.692875	799.371197	0.40846	0.00016367	2.3986	0.00096112	2.8071	0.0011248	400.6936939265141	25.214	0.50583	25.042	24.777	25.282	-0.17151					18	11	2	0	0	0	0.027866	1	1180	1180		35.618	6.4687	1	111400	+		20290	23369	14080	14108	23157	23157					-0.03651329333047215
GLSQVAVTV	9	Unmodified	_GLSQVAVTV_					0	0	0		nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;ENST00000438796.6_1_3:197607619-197610534:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3	nc|ENSG00000186001|Q96II8-4|LRCH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.25543212890625	2	437.255643	872.496732	-0.79637	-0.00034822	1.2273	0.00053666	0.43098	0.00018845	437.2560159374034	62.171	0.57781	62.171	61.868	62.446	0					36	18	3	0	0	0	0.014454	2	7225	7217;7225		185.55	32.514	1	3267100			20291	9502	14081	14109	23158;23159	23159					0.05538382523184282
GLSQVAVTV	9	Unmodified	_GLSQVAVTV_					0	0	0		nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;ENST00000438796.6_1_3:197607619-197610534:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3	nc|ENSG00000186001|Q96II8-4|LRCH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2548828125	2	437.255643	872.496732	-0.68466	-0.00029937	0.31909	0.00013953	-0.36557	-0.00015985	437.25562236035256	62.381	0.90424	62.141	61.791	62.695	-0.23926					40	26	3	0	0	0	0.014034	3	7229	7220;7229;7238		195.81	33.916	1	3432500			20292	9502	14081	14109	23160;23161;23162	23161					0.05538382523184282
GLSQVAVTV	9	Unmodified	_GLSQVAVTV_					0	0	0		nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;ENST00000438796.6_1_3:197607619-197610534:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3	nc|ENSG00000186001|Q96II8-4|LRCH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.2547302246094	2	437.255643	872.496732	-0.74165	-0.00032429	0.14406	6.299E-05	-0.59759	-0.0002613	437.2556287448171	62.087	1.3295	62.149	61.806	63.135	0.062767					45	34	2	0	0	0	0.014034	3	7122	7122;7131;7141		166.68	23.264	1	4675500			20293	9502	14081	14109	23163;23164;23165	23163					0.05538382523184282
GLSQVAVTV	9	Unmodified	_GLSQVAVTV_					0	0	0		nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;ENST00000438796.6_1_3:197607619-197610534:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3	nc|ENSG00000186001|Q96II8-4|LRCH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.255643	872.496732	-0.30036	-0.00013133	0.21944	9.595E-05	-0.080923	-3.5384E-05	437.2556314449966	62.419	0.43136	62.198	61.885	62.316	-0.22097	0.0039896	-0.00036529	NaN	166.68	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254800			20294	9502	14081	14109							0.05538382523184282
GLSQVAVTV	9	Unmodified	_GLSQVAVTV_					0	0	0		nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;ENST00000438796.6_1_3:197607619-197610534:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3	nc|ENSG00000186001|Q96II8-4|LRCH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.255643	872.496732	-0.81555	-0.0003566	0.95099	0.00041583	0.13544	5.9223E-05	437.2559247708332	62.428	0.46035	62.249	61.922	62.383	-0.17828	0.055057	0.00027446	NaN	166.68	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1371200			20295	9502	14081	14109							0.05538382523184282
GLSQVAVTV	9	Unmodified	_GLSQVAVTV_					0	0	0		nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;ENST00000438796.6_1_3:197607619-197610534:+|nuORF	nc|ENSG00000186001|Q96II8-4|LRCH3	nc|ENSG00000186001|Q96II8-4|LRCH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	437.255643	872.496732	0.017007	7.4363E-06	0.36762	0.00016074	0.38462	0.00016818	437.2556843848389	62.515	0.47103	62.257	61.977	62.448	-0.25824	0.06249	-0.00023571	NaN	166.68	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1079900			20296	9502	14081	14109							0.05538382523184282
GLSSDLQQV	9	Unmodified	_GLSSDLQQV_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7459716796875	2	473.745639	945.476725	0.46506	0.00022032	0.75892	0.00035954	1.224	0.00057986	473.7459157642759	57.022	0.62459	57.022	56.872	57.496	0					45	16	4	0	0	0	0.10174	1	6406	6406		110.12	22.366	1	4622700			20297	8555	14082	14110	23166	23166					0.0018058679256682808
GLSSLSIHL	9	Unmodified	_GLSSLSIHL_					0	0	0		nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;nc|ENSG00000110931|Q96RR4-7|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2;ENST00000535524.1_1_12:121691250-121712353:-|nuORF	nc|ENSG00000110931|Q96RR4-6|CAMKK2	nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7689514160156	2	463.768917	925.523281	-0.43639	-0.00020238	0.65386	0.00030324	0.21747	0.00010086	463.76909440867695	66.82	0.69778	66.82	66.588	67.285	0					36	16	3	0	0	0	0.17455	1	7958	7958		94.006	11.701	1	1318200			20298	3077	14083	14111	23167	23167					0.05754071414526152
GLSSLSIHL	9	Unmodified	_GLSSLSIHL_					0	0	0		nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;nc|ENSG00000110931|Q96RR4-7|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2;ENST00000535524.1_1_12:121691250-121712353:-|nuORF	nc|ENSG00000110931|Q96RR4-6|CAMKK2	nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7691345214844	2	463.768917	925.523281	-0.31743	-0.00014721	0.52913	0.00024539	0.2117	9.8182E-05	463.7690169431597	67.141	0.76531	66.859	66.588	67.354	-0.28148					39	18	3	0	0	0	0.17455	1	7976	7976		94.006	8.6469	1	1482100			20299	3077	14083	14111	23168	23168					0.05754071414526152
GLSSLSIHL	9	Unmodified	_GLSSLSIHL_					0	0	0		nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;nc|ENSG00000110931|Q96RR4-7|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2;ENST00000535524.1_1_12:121691250-121712353:-|nuORF	nc|ENSG00000110931|Q96RR4-6|CAMKK2	nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7688293457031	2	463.768917	925.523281	0.40586	0.00018823	-0.22241	-0.00010315	0.18344	8.5076E-05	463.7687024074501	66.856	0.78707	66.88	66.643	67.43	0.023911					38	18	3	0	0	0	0.17455	1	7886	7886		94.006	8.6469	1	1085600			20300	3077	14083	14111	23169	23169					0.05754071414526152
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.7942504882812	2	547.795663	1093.57677	-0.48536	-0.00026588	0.68523	0.00037537	0.19988	0.00010949	547.7960892770406	53.96	0.91527	53.96	53.545	54.461	0					62	25	4	0	0	0	0.86389	1	5865	5865		56.434	3.0823	1	6251000			20301	6777	14084	14112	23170	23170					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.7957153320312	2	547.795663	1093.57677	-0.60629	-0.00033212	1.197	0.00065573	0.59074	0.0003236	547.7964816941873	54.084	0.59241	53.937	53.639	54.232	-0.14723					46	16	4	0	0	0	0.72729	1	5854	5854		65.465	12.529	1	6501300			20302	6777	14084	14112	23171	23171					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.794189453125	2	547.795663	1093.57677	-0.79396	-0.00043493	0.80877	0.00044304	0.014803	8.1091E-06	547.7962115716421	53.726	0.93283	53.822	53.556	54.489	0.095669					54	26	4	0	0	0	0.69662	1	5756	5756		67.494	3.2864	1	7747700			20303	6777	14084	14112	23172	23172					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.79541015625	2	547.795663	1093.57677	-1.1457	-0.00062759	0.81178	0.00044469	-0.33388	-0.0001829	547.7960361167917	53.995	1.1647	53.858	53.531	54.696	-0.13617					95	34	4	0	0	0	0.47897	4	5689	5689;5699;5712;5724		90.601	20.973	1	13979000			20304	6777	14084	14112	23173;23174;23175;23176	23173					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.7958374023438	2	547.795663	1093.57677	-0.18618	-0.00010199	-0.16369	-8.9668E-05	-0.34987	-0.00019166	547.7955117964044	54.177	1.2755	53.932	53.421	54.696	-0.2453					99	38	4	0	0	0	0.29487	4	5734	5712;5722;5734;5747		109.48	21.782	1	15456000			20305	6777	14084	14112	23177;23178;23179;23180	23179					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.7949829101562	2	547.795663	1093.57677	-0.33644	-0.0001843	-0.1628	-8.9184E-05	-0.49924	-0.00027348	547.7954950917787	54.071	1.2109	53.873	53.556	54.767	-0.19739					84	34	4	0	0	0	0.40114	4	5706	5695;5706;5718;5729		98.582	28.493	1	17315000			20306	6777	14084	14112	23181;23182;23183;23184	23182					0.03372824126358864
GLSVIIPHV	9	Unmodified	_GLSVIIPHV_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MSMS	OPSCC_39_ClassI_Rep-2	2	467.7909240722656	2	467.789653	933.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.538	1	70.246	69.746	70.746	-0.29291								0	0	0	0.209	1	8488	8488		74.517	37.357	1				20307	6852	14085	14113	23185	23185					0.09531252173849225
GLSVLSVIVK	10	Unmodified	_GLSVLSVIVK_					0	0	0			REV__nc|ENSG00000106565|Q3YBM2-2|TMEM176B	REV__nc|ENSG00000106565|Q3YBM2-2|TMEM176B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2923889160156	2	507.831517	1013.64848	0.14231	7.2269E-05	-1.0586	-0.00053761	-0.91634	-0.00046534	507.8309070446267	52.454	0.19341	52.306	52.132	52.326	-0.14723					5	4	2	0	0	0	0.03519	1	5578	5578		14.865	0	1	42125	+		20308	21627	14086	14114	23186	23186					0.14220363550907678
GLTALHVGLL	10	Unmodified	_GLTALHVGLL_					0	0	0			REV__nc|ENSG00000176510|Q8NH08|OR10AC1	REV__nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2685852050781	2	497.30821	992.601866	-1.01	-0.00050226	-0.098939	-4.9203E-05	-1.1089	-0.00055146	497.30860774815255	35.159	0.40587	35.138	34.941	35.347	-0.021763					18	10	3	0	0	0	0.03519	1	2638	2638		45.952	10.334	1	88058	+		20309	36964	14087	14115	23187	23187					0.10526923719623937
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.76837158203125	2	493.768917	985.523281	0.38778	0.00019148	0.6179	0.0003051	1.0057	0.00049658	493.7686819955673	69.758	0.75504	69.758	69.238	69.993	0					68	18	6	0	0	0	0.062871	2	8411	8411;8423		123.99	63.695	1	2518300			20310	4142	14088	14116	23188;23189	23188					0.029940714145254788
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7684631347656	2	493.768917	985.523281	0.71159	0.00035136	0.22346	0.00011034	0.93505	0.0004617	493.7685654783297	70.066	0.83591	69.773	69.202	70.038	-0.29291					69	20	6	0	0	0	0.22754	2	8431	8420;8431		85.359	26.822	1	2593600			20311	4142	14088	14116	23190;23191	23191					0.029940714145254788
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.76849365234375	2	493.768917	985.523281	-0.3378	-0.0001668	0.52403	0.00025875	0.18623	9.1953E-05	493.76907063006917	69.853	0.44411	69.866	69.627	70.071	0.012421					27	10	3	0	0	0	0.10076	3	8342	8342;8353;8367		110.34	50.043	1	2531600			20312	4142	14088	14116	23192;23193;23194	23192					0.029940714145254788
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7686767578125	2	493.768917	985.523281	-0.66819	-0.00032993	0.68737	0.0003394	0.019184	9.4722E-06	493.76904722367806	70.084	0.70446	69.816	69.493	70.198	-0.26725					48	16	5	0	0	0	0.088511	1	8140	8140		114.59	48.783	1	2017800			20313	4142	14088	14116	23195	23195					0.029940714145254788
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.768917	985.523281	0.068963	3.4052E-05	0.21413	0.00010573	0.28309	0.00013978	493.76868103055335	69.988	0.74388	69.737	69.399	70.143	-0.25063	-0.044963	-0.00012549	NaN	123.99	57	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1634700			20314	4142	14088	14116							0.029940714145254788
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.768917	985.523281	0.10129	5.0016E-05	-0.13343	-6.5884E-05	-0.032136	-1.5868E-05	493.7686217466322	69.965	0.69778	69.743	69.39	70.087	-0.22245	-0.039166	-0.00046872	NaN	123.99	47	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1617900			20315	4142	14088	14116							0.029940714145254788
GLTEGLPVL	9	Unmodified	_GLTEGLPVL_					0	0	0		ENST00000399300.6_1_8:94749582-94753239:-|nuORF	ENST00000399300.6_1_8:94749582-94753239:-|nuORF	ENST00000399300.6_1_8:94749582-94753239:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7572937011719	2	449.765843	897.517133	-0.24409	-0.00010978	-2.9062	-0.0013071	-3.1503	-0.0014169	449.76444383341425	20.843	1.0145	20.738	20.079	21.094	-0.10477					42	20	3	0	0	0	0.024443	1	514	514		12.959	2.6939	1	91735			20316	13642	14089	14117	23196	23196					0.06427553183004875
GLTIQLPVL	9	Unmodified	_GLTIQLPVL_					0	0	0			REV__ENST00000477322.1_1_1:92798926-92846428:+|nuORF	REV__ENST00000477322.1_1_1:92798926-92846428:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.30572509765625	2	477.305136	952.595718	-0.27091	-0.00012931	1.0418	0.00049726	0.77088	0.00036795	477.305224658588	91.405	0.81181	91.405	91.133	91.945	0					38	18	3	0	0	0	0.83071	1	11591	11591		37.159	2.9866	1	1405100	+		20317	22646	14090	14118	23197	23197					0.11752405488073236
GLTPPLVLLL	10	Unmodified	_GLTPPLVLLL_					0	0	0			REV__ENST00000524819.5_1_11:62529062-62529592:+|nuORF	REV__ENST00000524819.5_1_11:62529062-62529592:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.2616577148438	2	518.344261	1034.67397	-0.83609	-0.00043338	3.3611	0.0017422	2.525	0.0013088	518.3458917601196	57.47	0.85226	57.565	56.911	57.763	0.095306					36	22	2	0	0	0	0.03519	1	6380	6380		30.504	14.03	1	922700	+		20318	34399	14091	14119	23198	23198					0.15801838073343788
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.83251953125	2	608.832246	1215.64994	-1.0642	-0.00064792	1.2211	0.00074342	0.15686	9.5502E-05	608.8328971651626	84.164	1.3437	84.164	83.779	85.123	0					99	31	4	0	0	0	0.078638	2	10540	10530;10540		113.41	44.88	1	1648500			20319	922	14092	14120	23199;23200	23200					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8320922851562	2	608.832246	1215.64994	-1.0615	-0.00064628	1.063	0.00064717	0.0014755	8.9834E-07	608.8328475206764	84.103	1.2655	84.031	83.7	84.965	-0.072769					88	29	4	0	0	0	0.010909	3	10504	10482;10491;10504		138.83	82.104	1	1717700			20320	922	14092	14120	23201;23202;23203	23203					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.8324584960938	2	608.832246	1215.64994	-1.5949	-0.00097102	1.6905	0.0010292	0.095627	5.8221E-05	608.8332102367502	84.071	1.3136	84.097	83.641	84.954	0.026558					91	30	4	0	0	0	0.078638	2	10435	10435;10445		113.41	55.182	1	1787700			20321	922	14092	14120	23204;23205	23204					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.8321533203125	2	608.832246	1215.64994	0.30839	0.00018776	-0.17078	-0.00010397	0.13762	8.3785E-05	608.8320294703035	84.025	0.86154	83.856	83.492	84.353	-0.16915					33	19	3	0	0	0	0.1766	2	10153	10153;10165		101.6	55.628	1	473740			20322	922	14092	14120	23206;23207	23206					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.8320922851562	2	608.832246	1215.64994	0.076868	4.68E-05	0.43948	0.00026757	0.51635	0.00031437	608.8323267863886	84.016	0.7346	83.878	83.588	84.323	-0.13788					41	16	4	0	0	0	0.14598	1	10143	10143		104.75	46.517	1	445380			20323	922	14092	14120	23208	23208					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	608.832246	1215.64994	-0.3807	-0.00023178	0.76187	0.00046385	0.38117	0.00023207	608.8325881132296	84.074	0.60268	83.862	83.6	84.202	-0.21159	-0.11933	-0.00042723	NaN	138.83	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472350			20324	922	14092	14120							0.05073952849011221
GLTVAFGF	8	Unmodified	_GLTVAFGF_					0	0	0			REV__ENST00000493581.1_1_9:33443725-33447528:-|nuORF	REV__ENST00000493581.1_1_9:33443725-33447528:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2483825683594	2	406.221072	810.42759	0.92554	0.00037597	2.0864	0.00084752	3.0119	0.0012235	406.2214787070723	87.877	0.72108	87.741	87.346	88.067	-0.13613					32	17	3	0	0	0	0.027866	1	10673	10673		23.037	7.4005	1	497060	+		20325	33767	14093	14121	23209	23209					0.014793432942951767
GLTYGIITVM	10	Unmodified	_GLTYGIITVM_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2740478515625	2	534.293911	1066.57327	-0.21135	-0.00011292	0.91561	0.00048921	0.70426	0.00037628	534.2944372089846	87.221	2.5897	87.221	86.43	89.02	0					106	61	3	0	0	0	0.03519	1	11133	11133		68.787	14.011	1	498740	+		20326	27729	14094	14122	23210	23210					0.04264438028144468
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.25323486328125	2	414.252903	826.491253	0.72382	0.00029984	-0.63582	-0.00026339	0.087995	3.6452E-05	414.25257175363106	69.498	0.89853	69.498	69.016	69.915	0					48	22	3	0	0	0	0.097274	1	8384	8384		136.44	31.491	1	1372800			20327	3330	14095	14123	23211	23211					0.07106703731381003
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.25323486328125	2	414.252903	826.491253	1.0185	0.0004219	-0.86515	-0.00035839	0.15331	6.3509E-05	414.25250103473127	69.809	0.71784	69.516	69.202	69.92	-0.29291					43	17	3	0	0	0	0.031052	1	8385	8385		154.34	34.281	1	1257800			20328	3330	14095	14123	23212	23212					0.07106703731381003
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2532043457031	2	414.252903	826.491253	-0.31672	-0.0001312	0.61979	0.00025675	0.30307	0.00012555	414.2530852830844	69.521	0.74603	69.536	69.209	69.955	0.015129					43	18	3	0	0	0	0.097274	1	8305	8305		136.44	31.491	1	1352900			20329	3330	14095	14123	23213	23213					0.07106703731381003
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	414.252903	826.491253	-0.50245	-0.00020814	0.54683	0.00022652	0.044379	1.8384E-05	414.2530172182501	69.824	0.83658	69.557	69.121	69.957	-0.26725	0.029013	0.00046721	NaN	154.34	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409850			20330	3330	14095	14123							0.07106703731381003
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	414.252903	826.491253	-0.029927	-1.2398E-05	0.38035	0.00015756	0.35042	0.00014516	414.2529736135264	69.795	0.7014	69.545	69.115	69.817	-0.25063	0.017185	0.00032928	NaN	154.34	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393940			20331	3330	14095	14123							0.07106703731381003
GLVAGGIIGA	10	Unmodified	_GLVAGGIIGA_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.252903	826.491253	0.19218	7.961E-05	0.14218	5.8899E-05	0.33436	0.00013851	414.25291586652395	69.737	0.74334	69.515	69.145	69.888	-0.22245	-0.013042	0.00013196	NaN	154.34	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478160			20332	3330	14095	14123							0.07106703731381003
GLVASMAFDPA	11	Unmodified	_GLVASMAFDPA_					0	0	0			REV__nc|ENSG00000135111|O15119-3|TBX3	REV__nc|ENSG00000135111|O15119-3|TBX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.816650390625	2	539.765517	1077.51648	-0.11079	-5.9803E-05	-3.2907	-0.0017762	-3.4015	-0.001836	540.2655437304314	41.093	0.53602	40.97	40.653	41.189	-0.12318					18	14	3	0	0	0	0.024759	1	3633	3633		42.396	13.247	1	190040	+		20333	23514	14096	14124	23214	23214					-0.019176095283455652
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.808837890625	2	557.808771	1113.60299	-0.098855	-5.5142E-05	-0.40667	-0.00022684	-0.50552	-0.00028199	557.8085208705772	52.184	1.0488	52.184	51.702	52.75	0					83	27	5	0	0	0	0.10031	3	5581	5581;5593;5606		109.44	43.973	1	7109900			20334	6762	14097	14125	23215;23216;23217	23215					0.050730932978467536
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.8085327148438	2	557.808771	1113.60299	-0.19198	-0.00010709	-0.19084	-0.00010645	-0.38282	-0.00021354	557.8086591735993	52.332	0.89994	52.185	51.745	52.645	-0.14735					72	23	5	0	0	0	0.11962	3	5575	5565;5575;5588		107.45	41.99	1	6553300			20335	6762	14097	14125	23218;23219;23220	23219					0.050730932978467536
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.8084716796875	2	557.808771	1113.60299	-0.40906	-0.00022818	0.12559	7.0053E-05	-0.28348	-0.00015813	557.8087046291297	52.082	1.2525	52.174	51.649	52.902	0.091938					82	32	5	0	0	0	0.17212	2	5494	5494;5508		102.06	49.125	1	3803200			20336	6762	14097	14125	23221;23222	23221					0.050730932978467536
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.808771	1113.60299	-0.74745	-0.00041693	1.0902	0.00060812	0.34275	0.00019119	557.8092289144289	52.249	0.80054	52.13	51.719	52.52	-0.11875	-0.044154	0.001202	NaN	109.44	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107000			20337	6762	14097	14125							0.050730932978467536
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.808771	1113.60299	-0.93284	-0.00052035	0.99712	0.0005562	0.064275	3.5853E-05	557.8092344865813	52.485	0.56895	52.216	51.944	52.513	-0.26903	0.04191	0.0010981	NaN	109.44	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1377200			20338	6762	14097	14125							0.050730932978467536
GLVDEKALAQA	11	Unmodified	_GLVDEKALAQA_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.808771	1113.60299	-0.33216	-0.00018528	0.22942	0.00012797	-0.10274	-5.7311E-05	557.8089124737294	52.342	0.70109	52.158	51.815	52.516	-0.18404	-0.016134	0.00024168	NaN	109.44	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081900			20339	6762	14097	14125							0.050730932978467536
GLVDIPRPS	9	Unmodified	_GLVDIPRPS_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.2869873046875	2	477.274367	952.53418	0.30132	0.00014381	-0.42755	-0.00020406	-0.12623	-6.0248E-05	477.27407479118386	53.933	0.81367	54.031	53.446	54.26	0.098015					34	22	2	0	0	0	0.024436	1	5826	5826		30.504	1.3541	1	789530	+		20340	28149	14098	14126	23223	23223					0.05601473788806288
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.79461669921875	2	478.792392	955.570232	-0.48619	-0.00023279	0.29133	0.00013949	-0.19486	-9.3299E-05	478.79240566110616	64.889	0.76113	64.889	64.499	65.26	0					52	20	3	0	0	0	0.22902	1	7656	7656		85.161	15.533	1	4281800			20341	763	14099	14127	23224	23224					0.0906693096563913
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7939758300781	2	478.792392	955.570232	-1.062	-0.00050846	0.78109	0.00037398	-0.28088	-0.00013448	478.7926165793325	65.118	0.77506	64.855	64.532	65.307	-0.2626					49	20	3	0	0	0	0.17845	1	7665	7665		93.143	15.826	1	4106600			20342	763	14099	14127	23225	23225					0.0906693096563913
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.79425048828125	2	478.792392	955.570232	-0.49783	-0.00023836	0.34976	0.00016746	-0.14807	-7.0894E-05	478.79241888168883	64.871	0.91451	64.908	64.44	65.355	0.037384					51	24	3	0	0	0	0.22902	2	7587	7575;7587		85.161	26.379	1	4570600			20343	763	14099	14127	23226;23227	23227					0.0906693096563913
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.792392	955.570232	-0.081807	-3.9169E-05	0.19548	9.3596E-05	0.11368	5.4428E-05	478.7923755124508	65.179	0.68851	64.944	64.607	65.296	-0.2345	0.023821	-0.00022931	NaN	93.143	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	616900			20344	763	14099	14127							0.0906693096563913
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.792392	955.570232	-1.2708	-0.00060845	0.87287	0.00041792	-0.39793	-0.00019053	478.7926303747458	65.178	0.81493	64.975	64.617	65.432	-0.20254	0.054873	0.00041935	NaN	93.143	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621460			20345	763	14099	14127							0.0906693096563913
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.792392	955.570232	-0.34573	-0.00016553	0.13904	6.6571E-05	-0.20669	-9.8961E-05	478.79226232469387	65.203	0.72118	64.951	64.507	65.228	-0.25265	0.030067	-0.00028336	NaN	93.143	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625350			20346	763	14099	14127							0.0906693096563913
GLVGNSLVIYV	11	Unmodified	_GLVGNSLVIYV_					0	0	0		ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3308715820312	2	567.331882	1132.64921	-0.10765	-6.1074E-05	-3.625	-0.0020566	-3.7326	-0.0021176	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	0.99553	1	10972	10972		37.812	4.9991	1	5896300			20347	3511	14100	14128	23228	23228					0.08819158199935373
GLVGPMGHLN	10	Unmodified	_GLVGPMGHLN_					0	0	0			REV__ENSG00000132677|ENST00000537040|RHBG	REV__ENSG00000132677|ENST00000537040|RHBG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2970886230469	2	497.760569	993.506586	0.51203	0.00025487	-1.3775	-0.00068569	-0.86551	-0.00043082	497.7598138834488	69.646	0.543	69.353	69.09	69.633	-0.29291					23	13	2	0	0	0	0.03519	1	8329	8329		30.504	0	1	181430	+		20348	23308	14101	14129	23229	23229					0.009572472569175261
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2529602050781	2	451.2531	900.491647	0.81415	0.00036739	-0.67202	-0.00030325	0.14212	6.4134E-05	451.25275414925204	66.044	0.60674	66.044	65.681	66.288	0					47	15	5	0	0	0	0.0085264	2	7844	7844;7855		255.13	107.08	1	4417800			20349	6319	14102	14130	23230;23231	23230					0.03742078660570769
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.25360107421875	2	451.2531	900.491647	0.019711	8.8947E-06	-0.12651	-5.709E-05	-0.1068	-4.8196E-05	451.253075078331	66.398	0.49323	66.117	65.788	66.281	-0.28149					43	12	5	0	0	0	0.0085264	1	7862	7862		255.13	93.228	1	4413000			20350	6319	14102	14130	23232	23232					0.03742078660570769
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	451.2531	900.491647	-0.028033	-1.265E-05	0.13382	6.0386E-05	0.10579	4.7736E-05	451.2530277339067	66.038	0.48328	66.068	65.812	66.296	0.030106	-0.055791	-2.9805E-06	NaN	255.13	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4762200			20351	6319	14102	14130							0.03742078660570769
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.2531	900.491647	0.031972	1.4428E-05	0.19756	8.9148E-05	0.22953	0.00010358	451.25306275626525	66.411	0.42738	66.163	65.94	66.368	-0.2484	0.039355	5.4543E-05	NaN	255.13	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469510			20352	6319	14102	14130							0.03742078660570769
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.2531	900.491647	-0.58449	-0.00026375	1.0668	0.0004814	0.48232	0.00021765	451.25339097191085	66.407	0.49856	66.184	65.905	66.403	-0.22374	0.06004	0.00083905	NaN	255.13	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407050			20353	6319	14102	14130							0.03742078660570769
GLVGSLQEV	9	Unmodified	_GLVGSLQEV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000467878.1_1_2:112638162-112638411:-|nuORF;ENST00000489177.1_1_2:112630836-112638411:-|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.2531	900.491647	-0.42641	-0.00019242	0.88315	0.00039852	0.45674	0.0002061	451.25331929628817	66.412	0.49509	66.166	65.891	66.386	-0.24517	0.042798	0.0006733	NaN	255.13	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304170			20354	6319	14102	14130							0.03742078660570769
GLVKDVEGR	9	Unmodified	_GLVKDVEGR_					0	0	0			REV__ENST00000216968.4_1_20:33764702-33764822:+|nuORF	REV__ENST00000216968.4_1_20:33764702-33764822:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7873229980469	2	486.777274	971.539994	-0.49799	-0.00024241	1.0693	0.00052052	0.57134	0.00027812	486.7776397441779	45.216	1.1597	45.216	44.725	45.885	0					108	33	5	0	0	0	0.024405	1	4310	4310		20.947	14.211	1	1944500	+		20355	29326	14103	14131	23233	23233					0.05308572300475589
GLVKERVI	8	Unmodified	_GLVKERVI_					0	0	0			REV__ENST00000456760.1_1_9:125448634-125449186:+|nuORF	REV__ENST00000456760.1_1_9:125448634-125449186:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2955322265625	2	457.295102	912.575651	-0.48825	-0.00022327	0.3309	0.00015132	-0.15735	-7.1956E-05	457.2952369593063	55.851	0.91164	55.948	55.561	56.473	0.097893					69	24	4	0	0	0	0.43637	1	6113	6113		92.191	3.5478	1	6402600	+		20356	32798	14104	14132	23234	23234					0.11586654548136721
GLVKPGWGL	9	Unmodified	_GLVKPGWGL_					0	0	0			REV__ENST00000476276.5_1_16:2892353-2892452:-|nuORF	REV__ENST00000476276.5_1_16:2892353-2892452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.27764892578125	2	463.776545	925.538538	-0.68727	-0.00031874	-2.4555	-0.0011388	-3.1428	-0.0014575	463.77454884767565	49.115	0.95898	49.19	48.772	49.731	0.074192					81	25	4	0	0	0	0.75282	1	4990	4990		42.474	3.2216	1	10178000	+		20357	33308	14105	14133	23235	23235					0.07278983002368022
GLVLAPELLL	10	Unmodified	_GLVLAPELLL_					0	0	0		ENSG00000100263|ENST00000216085|RHBDD3	ENSG00000100263|ENST00000216085|RHBDD3	ENSG00000100263|ENST00000216085|RHBDD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.2664794921875	2	519.333893	1036.65323	-0.47685	-0.00024764	-2.6295	-0.0013656	-3.1064	-0.0016132	519.3323515392143	50.826	0.81527	50.826	50.544	51.359	0					56	22	3	0	0	0	0.03519	1	5429	5429		29.15	8.2026	1	1937900			20358	2162	14106	14134	23236	23236					0.13637247693668542
GLVLFNEAA	9	Unmodified	_GLVLFNEAA_					0	0	0			REV__ENSG00000173226|ENST00000310864|IQCB1	REV__ENSG00000173226|ENST00000310864|IQCB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7745056152344	2	467.255643	932.496732	-0.061529	-2.875E-05	-1.5933	-0.00074446	-1.6548	-0.00077321	467.2548285647966	19.883	0.56957	19.767	19.4	19.97	-0.11581					13	11	2	0	0	0	0.024506	1	411	411		23.042	10.083	1	24610	+		20359	26754	14107	14135	23237	23237					0.027783825231722403
GLVLHRASK	9	Unmodified	_GLVLHRASK_					0	0	0			REV__ENST00000287218.8_1_6:38120208-38120334:+|nuORF	REV__ENST00000287218.8_1_6:38120208-38120334:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.8033752441406	2	490.803626	979.592698	-1.0566	-0.0005186	0.58221	0.00028575	-0.47443	-0.00023285	490.8039011368712	35.425	0.97058	35.403	35.013	35.984	-0.021767					93	25	5	0	0	0	0.97455	1	2699	2699		25.574	3.6142	1	4431600	+		20360	29924	14108	14136	23238	23238					0.10208575153944821
GLVLIDRGL	9	Unmodified	_GLVLIDRGL_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.30010986328125	2	478.300384	954.586216	0.73219	0.00035021	-0.93531	-0.00044736	-0.20312	-9.715E-05	478.2999040287328	72.559	1.6131	72.559	71.94	73.553	0					110	40	4	0	0	0	0.096521	3	8834	8812;8834;8859		111.65	26.487	1	9765200	+		20361	36984	14109	14137	23239;23240;23241	23240					0.10710637202555517
GLVLIDRGL	9	Unmodified	_GLVLIDRGL_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.30035400390625	2	478.300384	954.586216	0.7452	0.00035643	-0.97601	-0.00046683	-0.23082	-0.0001104	478.29989438525683	72.93	1.5024	72.649	72.025	73.528	-0.28124					110	37	5	0	0	0	0.096521	1	8851	8851		111.65	15.833	1	11365000	+		20362	36984	14109	14137	23242	23242					0.10710637202555517
GLVLIDRGL	9	Unmodified	_GLVLIDRGL_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3002014160156	2	478.300384	954.586216	0.49351	0.00023605	-0.67061	-0.00032075	-0.1771	-8.4708E-05	478.3000503983945	72.646	1.5347	72.656	72.023	73.558	0.0097733					108	38	4	0	0	0	0.082191	4	8793	8748;8756;8793;8806		116.9	9.8961	1	10719000	+		20363	36984	14109	14137	23243;23244;23245;23246	23245					0.10710637202555517
GLVLIVTPY	9	Unmodified	_GLVLIVTPY_					0	0	0		ENST00000395514.5_1_14:55309440-55309725:-|nuORF	ENST00000395514.5_1_14:55309440-55309725:-|nuORF	ENST00000395514.5_1_14:55309440-55309725:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	487.8000793457031	2	487.799686	973.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.295	1	98.13	97.63	98.63	-0.1652								0	0	0	0.63881	1	12159	12159		33.516	1.5607	1				20364	13524	14110	14138	23247	23247					0.09697003113797109
GLVLLCITSAF	11	Unmodified	_GLVLLCITSAF_					0	0	0		ENST00000475645.1_1_6:106634207-106634378:-|nuORF	ENST00000475645.1_1_6:106634207-106634378:-|nuORF	ENST00000475645.1_1_6:106634207-106634378:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2673950195312	2	568.822835	1135.63112	-0.47527	-0.00027034	1.0741	0.00061095	0.59879	0.0003406	568.8232055787665	22.548	0.55292	22.362	22.047	22.6	-0.18539					14	11	2	0	0	0	0.024802	1	823	823		40.778	0	1	51992			20365	15065	14111	14139	23248	23248					0.06872699953578376
GLVLVTTLVWH	11	Unmodified	_GLVLVTTLVWH_					0	0	0		ENSG00000110786|ENST00000358540|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5;nc|ENSG00000110786|P54829-2|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.370361328125	2	619.368798	1236.72304	0.10969	6.7938E-05	3.1492	0.0019505	3.2589	0.0020184	619.3707577954212	100.03	0.81097	100.04	99.701	100.51	0.010109					50	20	3	0	0	0	1.0442	1	12782	12782		26.693	2.1737	1	871680			20366	3063	14112	14140	23249	23249					0.11415126362271621
GLVLYISSI	9	Unmodified	_GLVLYISSI_					0	0	0		ENSG00000105605|ENST00000391767|CACNG7;ENSG00000075429|ENST00000533854|CACNG5	ENSG00000105605|ENST00000391767|CACNG7	ENSG00000105605|ENST00000391767|CACNG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7779235839844	2	482.789318	963.564084	-0.53267	-0.00025717	-2.1663	-0.0010459	-2.6989	-0.001303	482.7881525505078	29.143	0.3523	29.222	29.016	29.368	0.078344					16	8	2	0	0	0	0.024466	1	1696	1696		25.45	0	1	258980			20367	2696	14113	14141	23250	23250					0.08084412734137914
GLVNYQISV	9	Unmodified	_GLVNYQISV_					0	0	0		ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENSG00000169919|ENST00000304895|GUSB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.77447509765625	2	496.7742	991.533846	-0.19283	-9.5795E-05	0.38468	0.0001911	0.19184	9.5303E-05	496.77416771737643	73.084	0.73963	73.084	72.698	73.438	0					55	18	4	0	0	0	0.03201	3	8910	8897;8910;8922		139.97	34.702	1	3319400			20368	7990;15060	14114	14142	23251;23252;23253	23252					0.03774054068958321
GLVNYQISV	9	Unmodified	_GLVNYQISV_					0	0	0		ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENSG00000169919|ENST00000304895|GUSB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7744140625	2	496.7742	991.533846	-0.15305	-7.603E-05	0.28143	0.00013981	0.12838	6.3777E-05	496.7741601610054	73.42	0.69557	73.149	72.842	73.538	-0.27126					52	17	4	0	0	0	0.014988	3	8919	8907;8919;8932		161.9	36.084	1	3619700			20369	7990;15060	14114	14142	23254;23255;23256	23255					0.03774054068958321
GLVNYQISV	9	Unmodified	_GLVNYQISV_					0	0	0		ENSG00000169919|ENST00000304895|GUSB;nc|ENSG00000169919|P08236-2|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENSG00000169919|ENST00000304895|GUSB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.77410888671875	2	496.7742	991.533846	0.037634	1.8696E-05	0.12769	6.3433E-05	0.16532	8.2129E-05	496.77408939211585	73.09	0.74197	73.1	72.777	73.519	0.0096512					52	18	4	0	0	0	0.016758	3	8824	8824;8837;8849		153.04	36.817	1	3369800			20370	7990;15060	14114	14142	23257;23258;23259	23257					0.03774054068958321
GLVPPSVRP	9	Unmodified	_GLVPPSVRP_					0	0	0			REV__ENST00000529976.5_1_20:57288690-57289536:+|nuORF	REV__ENST00000529976.5_1_20:57288690-57289536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.2793884277344	2	461.279452	920.544351	0.22538	0.00010396	-0.37639	-0.00017362	-0.15101	-6.9659E-05	461.27917608156173	42.587	0.5341	42.587	42.289	42.823	0					38	14	3	0	0	0	0.31247	1	3958	3958		73.975	8.1716	1	6756400	+		20371	34521	14115	14143	23260	23260					0.08090081514046688
GLVPPSVRP	9	Unmodified	_GLVPPSVRP_					0	0	0			REV__ENST00000529976.5_1_20:57288690-57289536:+|nuORF	REV__ENST00000529976.5_1_20:57288690-57289536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2794494628906	2	461.279452	920.544351	0.11547	5.3265E-05	-0.27145	-0.00012521	-0.15598	-7.1949E-05	461.2792388352515	42.777	0.50159	42.638	42.345	42.846	-0.13929					36	13	3	0	0	0	0.31247	1	3964	3964		73.975	8.1716	1	7065800	+		20372	34521	14115	14143	23261	23261					0.08090081514046688
GLVQTQRRTS	10	Unmodified	_GLVQTQRRTS_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.3243408203125	2	573.322911	1144.63127	0.26523	0.00015206	1.8471	0.001059	2.1124	0.0012111	573.3237901696456	108.39	0.55177	108.39	107.99	108.54	0					60	27	4	0	0	0	1.0616	1	13885	13885		37.812	4.9991	1	9295500	+		20373	26412	14116	14144	23262	23262					0.0647383599780369
GLVQTQRRTS	10	Unmodified	_GLVQTQRRTS_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	573.322911	1144.63127	0.15552	8.9165E-05	0.23922	0.00013715	0.39475	0.00022632	573.3239572856373	108.35	0.5361	108.34	108.01	108.55	-0.0056458	-0.025871	-0.0016597	NaN	37.812	47	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2116500	+		20374	26412	14116	14144							0.0647383599780369
GLVQVLLKV	9	Unmodified	_GLVQVLLKV_					0	0	0			REV__ENSG00000268320|ENST00000595228|SCGB1C2	REV__ENSG00000268320|ENST00000595228|SCGB1C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.81695556640625	2	484.828778	967.643003	-0.15129	-7.3348E-05	2.3924	0.0011599	2.2411	0.0010865	484.8301850245513	66.621	0.26294	66.372	66.141	66.404	-0.2484					9	6	2	0	0	0	0.024294	1	7645	7645		29.15	0	1	77766	+		20375	28006	14117	14145	23263	23263					0.1578868475909303
GLVQVPQGL	9	Unmodified	_GLVQVPQGL_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;SLC26A8|p.S369Kfs*27|1|0.07|ENSG00000112053|chr6:35977272-35977273|-/TTTTT|frameshift_variant;ENST00000486155.1_1_6:35928714-35992326:-|nuORF	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.7711181640625	2	455.77146	909.528367	0.044088	2.0094E-05	-0.19924	-9.0806E-05	-0.15515	-7.0712E-05	455.77134165871155	73.228	1.0176	73.238	72.735	73.753	0.0096512					69	25	4	0	0	0	0.29104	1	8910	8910		76.847	2.8719	1	12500000			20376	3167	14118	14146	23264	23264					0.06998375277146351
GLVRAVQT	8	Unmodified	_GLVRAVQT_					0	0	0		chr1:201387178-201399269|279|19.34|0.48|5.34|-|0|LAD1,LAD1|1	chr1:201387178-201399269|279|19.34|0.48|5.34|-|0|LAD1,LAD1|1	chr1:201387178-201399269|279|19.34|0.48|5.34|-|0|LAD1,LAD1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	421.727783203125	2	422.255977	842.497401	0.45346	0.00019148	-0.39935	-0.00016863	0.054117	2.2851E-05	422.25570402087436	24.904	0.42977	24.982	24.823	25.253	0.078344					15	9	2	0	0	0	0.027866	1	1111	1111		17.365	4.4058	1	116750			20377	279	14119	14147	23265	23265					0.06985221962906962
GLVRPPPGL	9	Unmodified	_GLVRPPPGL_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	453.2817077636719	2	453.281995	904.549437	-0.012351	-5.5987E-06	0.14702	6.6641E-05	0.13467	6.1042E-05	453.28192442111606	55.937	1.6562	55.781	55.293	56.95	-0.15601					94	45	3	0	0	0	0.55828	1	6173	6173		55.504	11.878	1	1827900			20378	18412	14120	14148	23266	23266					0.09334385376666887
GLVRPPPGL	9	Unmodified	_GLVRPPPGL_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.28173828125	2	453.281995	904.549437	-0.63768	-0.00028905	0.7983	0.00036185	0.16062	7.2805E-05	453.2821962532158	55.68	1.7591	55.778	55.294	57.053	0.098015					104	48	4	0	0	0	0.67308	1	6073	6073		47.916	7.343	1	1643700			20379	18412	14120	14148	23267	23267					0.09334385376666887
GLVSTGLKV	9	Unmodified	_GLVSTGLKV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.27392578125	2	437.273835	872.533118	-0.10743	-4.6974E-05	0.10475	4.5806E-05	-0.0026706	-1.1678E-06	437.2737461394083	52.926	1.0519	52.926	52.711	53.763	0					73	28	5	0	0	0	0.091713	3	5691	5691;5704;5716		113.41	33.961	1	5252800			20380	7717	14121	14149	23268;23269;23270	23268					0.0917525941989652
GLVSTGLKV	9	Unmodified	_GLVSTGLKV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2735595703125	2	437.273835	872.533118	-0.13291	-5.812E-05	0.17363	7.5924E-05	0.040716	1.7804E-05	437.27380352604575	53.04	1.0685	52.892	52.607	53.675	-0.14723					72	28	4	0	0	0	0.091713	2	5678	5678;5691		113.41	31.171	1	4959800			20381	7717	14121	14149	23271;23272	23271					0.0917525941989652
GLVSTGLKV	9	Unmodified	_GLVSTGLKV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.274169921875	2	437.273835	872.533118	0.36042	0.0001576	-0.43901	-0.00019197	-0.078595	-3.4367E-05	437.27353190805775	52.818	1.059	52.91	52.638	53.697	0.091938					68	28	4	0	0	0	0.12602	3	5592	5592;5604;5616		104.75	37.628	1	5693500			20382	7717	14121	14149	23273;23274;23275	23273					0.0917525941989652
GLVVLLLPE	9	Unmodified	_GLVVLLLPE_					0	0	0		ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.80731201171875	2	476.807511	951.600469	0.29453	0.00014043	-0.04089	-1.9497E-05	0.25364	0.00012094	476.80726373773	102.57	0.51749	102.4	102.2	102.72	-0.17178					27	11	3	0	0	0	0.88411	1	12728	12728		33.516	6.7195	1	500120			20383	9899	14122	14150	23276	23276					0.12273289630854833
GLVVTTWLS	9	Unmodified	_GLVVTTWLS_					0	0	0		ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.24163818359375	2	488.279118	974.543683	0.35157	0.00017166	2.0062	0.0009796	2.3578	0.0011513	488.27987924400225	52.561	0.47224	52.414	52.057	52.53	-0.14723					17	11	2	0	0	0	0.024294	1	5591	5591		55.504	13.108	1	311900			20384	10370	14123	14151	23277	23277					0.055392420743373805
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	561.7820434570312	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.357	1	64.357	63.857	64.857	0								0	0	0	0.014429	1	7575	7575		143.89	61.646	1				20385	5189	14124	14152	23278	23278					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	561.7828979492188	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.417	1	64.417	63.917	64.917	0								0	0	0	0.028164	1	7584	7584		118.74	68.719	1				20386	5189	14124	14152	23279	23279					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	561.7825927734375	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.487	1	64.487	63.987	64.987	0								0	0	0	0.028164	1	7595	7595		118.74	59.961	1				20387	5189	14124	14152	23280	23280					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	561.7824096679688	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.565	1	64.565	64.065	65.065	0								0	0	0	0.019922	1	7607	7607		131.03	72.249	1				20388	5189	14124	14152	23281	23281					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	561.7825927734375	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.667	1	64.667	64.167	65.167	0								0	0	0	0.024584	1	7623	7623		124.08	63.962	1				20389	5189	14124	14152	23282	23282					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.7826538085938	2	561.782556	1121.55056	-1.1992	-0.00067367	0.85389	0.0004797	-0.34528	-0.00019397	561.782957235646	64.725	1.4063	64.463	63.901	65.307	-0.2626					105	37	6	0	0	0	0.03666	4	7590	7581;7590;7603;7614		136.27	66.64	1	7162000			20390	5189	14124	14152	23283;23284;23285;23286	23284					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.7824096679688	2	561.782556	1121.55056	-0.23763	-0.00013349	-0.24026	-0.00013497	-0.47788	-0.00026847	561.7823252439298	64.429	1.1498	64.475	64.011	65.16	0.045502					87	30	4	0	0	0	0.03666	4	7513	7491;7500;7513;7524		136.27	72.061	1	7440200			20391	5189	14124	14152	23287;23288;23289;23290	23289					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.7825317382812	2	561.782556	1121.55056	-0.53078	-0.00029818	0.29183	0.00016394	-0.23895	-0.00013424	561.7825676583417	64.784	0.95772	64.55	64.216	65.174	-0.2345					57	23	4	0	0	0	0.1158	3	7366	7366;7377;7390		107.01	59.35	1	3471000			20392	5189	14124	14152	23291;23292;23293	23291					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.7827758789062	2	561.782556	1121.55056	-0.58605	-0.00032923	0.45486	0.00025553	-0.13119	-7.3699E-05	561.7826295081132	64.784	1.2086	64.581	64.224	65.432	-0.20254					68	29	4	0	0	0	0.22902	3	7392	7368;7380;7392		85.161	36.539	1	3024500			20393	5189	14124	14152	23294;23295;23296	23296					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	561.7825317382812	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.764	1	64.509	64.009	65.009	-0.25563								0	0	0	0.44849	1	7362	7362		58.23	19.424	1				20394	5189	14124	14152	23297	23297					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	561.7833251953125	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.836	1	64.581	64.081	65.081	-0.25563								0	0	0	0.16821	1	7373	7373		77.318	34.921	1				20395	5189	14124	14152	23298	23298					-0.005354450451250159
GLWEEAYRV	9	Unmodified	_GLWEEAYRV_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	561.7826538085938	2	561.782556	1121.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.909	1	64.653	64.153	65.153	-0.25563								0	0	0	0.3705	1	7384	7384		63.534	22.107	1				20396	5189	14124	14152	23299	23299					-0.005354450451250159
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	632.303955078125	2	632.303852	1262.59315	0.44031	0.00027841	-0.59031	-0.00037326	-0.15	-9.4845E-05	632.3034159633934	67.966	1.0326	67.966	67.568	68.6	0					72	26	4	0	0	0	0.066593	2	8156	8138;8156		116.9	44.855	1	3072300			20397	18822	14125	14153	23300;23301	23301					-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	632.303955078125	2	632.303852	1262.59315	0.80777	0.00051075	-0.82767	-0.00052334	-0.019905	-1.2586E-05	632.3032571261517	68.345	0.85239	68.052	67.743	68.596	-0.29267					72	21	5	0	0	0	0.36819	1	8167	8167		84.916	31.979	1	2437300			20398	18822	14125	14153	23302	23302					-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	632.3038940429688	2	632.303852	1262.59315	0.12949	8.1879E-05	-0.21747	-0.0001375	-0.087974	-5.5626E-05	632.3036490858259	68.081	0.98295	68.1	67.781	68.764	0.018913					76	25	4	0	0	0	0.035856	2	8077	8077;8091		125.81	58.32	1	2691000			20399	18822	14125	14153	23303;23304	23303					-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	632.303852	1262.59315	-0.53117	-0.00033586	0.47102	0.00029783	-0.060142	-3.8028E-05	632.3042316984084	68.347	0.65157	68.086	67.814	68.466	-0.26166	0.027753	0.0012114	NaN	125.81	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334750			20400	18822	14125	14153							-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	632.303852	1262.59315	-0.085614	-5.4134E-05	-0.016735	-1.0582E-05	-0.10235	-6.4716E-05	632.3038465102479	68.319	0.52078	68.085	67.837	68.357	-0.23376	0.027478	0.0005946	NaN	125.81	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381320			20401	18822	14125	14153							-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	632.303852	1262.59315	0.22949	0.00014511	-0.58449	-0.00036958	-0.35501	-0.00022447	632.3035181795548	68.289	0.72442	68.058	67.715	68.439	-0.23048	0.00018272	-0.00012339	NaN	125.81	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361320			20402	18822	14125	14153							-0.02764094707526965
GLWGPVHEL	9	Unmodified	_GLWGPVHEL_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2742919921875	2	504.269084	1006.52362	-0.20194	-0.00010183	0.79832	0.00040257	0.59638	0.00030074	504.2694624433981	65.39	0.82211	65.39	65.091	65.913	0					64	22	4	0	0	0	0.20304	2	7739	7739;7764		88.643	19.015	1	11605000			20403	10133	14126	14154	23305;23306	23305					0.020614911343841413
GLWGPVHEL	9	Unmodified	_GLWGPVHEL_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.27264404296875	2	504.269084	1006.52362	-0.34652	-0.00017474	0.9487	0.0004784	0.60218	0.00030366	504.2695513365503	65.708	1.0555	65.435	65.126	66.181	-0.27282					73	28	4	0	0	0	0.088511	3	7777	7748;7777;7790		114.59	32.345	1	10579000			20404	10133	14126	14154	23307;23308;23309	23308					0.020614911343841413
GLWGPVHEL	9	Unmodified	_GLWGPVHEL_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.271484375	2	504.269084	1006.52362	0.0056228	2.8354E-06	0.48061	0.00024236	0.48624	0.00024519	504.2693018504905	65.435	0.93019	65.473	65.045	65.975	0.037376					68	25	4	0	0	0	0.20304	2	7693	7680;7693		88.643	19.015	1	10275000			20405	10133	14126	14154	23310;23311	23311					0.020614911343841413
GLWGTVVNI	9	Unmodified	_GLWGTVVNI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MSMS	OPSCC_39_ClassI_Rep-1	1	479.7701721191406	2	479.77146	957.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.569	1	88.569	88.069	89.069	0								0	0	0	0.025861	1	11166	11166		122.18	31.399	1				20406	8622	14127	14155	23312	23312					0.04790375277127623
GLWISPTNL	9	Unmodified	_GLWISPTNL_					0	0	0			REV__ENST00000309502.7_1_1:203136120-203136207:+|nuORF	REV__ENST00000309502.7_1_1:203136120-203136207:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3135681152344	2	500.776742	999.538931	-0.9758	-0.00048866	-2.7044	-0.0013543	-3.6802	-0.0018429	500.77490749983804	60.497	0.20406	60.321	60.239	60.443	-0.1761					6	4	2	0	0	0	0.023417	1	6730	6730		68.787	15.435	1	116820	+		20407	30162	14128	14156	23313	23313					0.039143579315464194
GLWLGRDL	8	Unmodified	_GLWLGRDL_					0	0	0		ENST00000478406.5_1_1:227171537-227174435:+|nuORF	ENST00000478406.5_1_1:227171537-227174435:+|nuORF	ENST00000478406.5_1_1:227171537-227174435:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2869567871094	2	465.263802	928.513051	-1.2969	-0.00060339	-0.61996	-0.00028844	-1.9168	-0.00089183	465.26380780019514	75.288	0.63158	75.288	74.955	75.586	0					24	16	3	0	0	0	0.027866	1	9262	9262		46.766	15.188	1	338590			20408	15148	14129	14157	23314	23314					0.04593508479945285
GLWLLAEKP	9	Unmodified	_GLWLLAEKP_					0	0	0			REV__ENST00000453038.5_1_2:220040976-220041837:-|nuORF	REV__ENST00000453038.5_1_2:220040976-220041837:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8175048828125	2	513.80276	1025.59097	0.37829	0.00019437	-3.307	-0.0016991	-2.9287	-0.0015048	513.8007354413556	72.951	0.49265	72.67	72.506	72.999	-0.28124					17	11	2	0	0	0	0.023817	1	8846	8846		60.972	0	1	143920	+		20409	30911	14130	14158	23315	23315					0.0791952134532039
GLWLSGFGLL	10	Unmodified	_GLWLSGFGLL_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8026123046875	2	531.80276	1061.59097	-0.8456	-0.00044969	-0.32496	-0.00017281	-1.1706	-0.00062251	531.8030823730422	79.314	1.6758	79.314	78.91	80.585	0					67	39	3	0	0	0	1.0004	1	9840	9840		45.952	1.5748	1	650440			20410	3805	14131	14159	23316	23316					0.06263521345317713
GLWVYFFY	8	Unmodified	_GLWVYFFY_					0	0	0		ENST00000286398.11_1_9:106894396-106896742:+|nuORF	ENST00000286398.11_1_9:106894396-106896742:+|nuORF	ENST00000286398.11_1_9:106894396-106896742:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.7506713867188	2	547.770929	1093.5273	-1.5553	-0.00085194	1.6337	0.00089487	0.07837	4.2929E-05	547.7717212017894	29.653	0.4772	29.731	29.489	29.966	0.078344					27	11	3	0	0	0	0.027866	1	1808	1808		24.504	0	1	974900			20411	11757	14132	14160	23317	23317					-0.015718390917754732
GLYALGLIHA	10	Unmodified	_GLYALGLIHA_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.323486328125	2	514.300384	1026.58622	-0.95986	-0.00049365	1.204	0.00061919	0.2441	0.00012554	514.3009737600438	74.159	0.68245	74.169	73.924	74.607	0.0096512					28	15	2	0	0	0	0.03519	1	8991	8991		65.897	8.4448	1	345270			20412	19003;8399	14133	14161	23318	23318					0.073986372025729
GLYEGLDWLA	10	Unmodified	_GLYEGLDWLA_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.7845458984375	2	568.784764	1135.55498	-0.68431	-0.00038922	0.62927	0.00035792	-0.05503	-3.13E-05	568.7850466868974	94.68	1.3222	94.68	94.283	95.605	0					81	30	4	0	0	0	0.20364	5	12039	12039;12050;12062;12075;12089		120.62	58.514	1	4244300			20413	18285	14134	14162	23319;23320;23321;23322;23323	23319					-0.007379806221706531
GLYEGLDWLA	10	Unmodified	_GLYEGLDWLA_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.7844848632812	2	568.784764	1135.55498	-0.193	-0.00010977	0.11884	6.7596E-05	-0.074154	-4.2177E-05	568.784792679984	94.584	1.0297	94.584	94.228	95.258	-0.00023651					72	23	4	0	0	0	0.070102	5	11998	11989;11998;12010;12022;12047		143.11	75.613	1	3919600			20414	18285	14134	14162	23324;23325;23326;23327;23328	23325					-0.007379806221706531
GLYEGLDWLA	10	Unmodified	_GLYEGLDWLA_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.7843627929688	2	568.784764	1135.55498	-0.92198	-0.00052441	0.90183	0.00051295	-0.020153	-1.1463E-05	568.7852119696242	94.718	1.4183	94.722	94.323	95.741	0.0041122					86	31	4	0	0	0	0.070102	6	11970	11960;11970;11981;11993;12006;12018		143.11	73.479	1	3724900			20415	18285	14134	14162	23329;23330;23331;23332;23333;23334	23330					-0.007379806221706531
GLYEGLDWLA	10	Unmodified	_GLYEGLDWLA_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.7850952148438	2	568.784764	1135.55498	-0.44491	-0.00025306	0.20322	0.00011559	-0.24169	-0.00013747	568.784746181438	94.603	1.3822	94.465	94.213	95.595	-0.13779					55	31	4	0	0	0	0.52982	1	11657	11657		84.916	35.379	1	501120			20416	18285	14134	14162	23335	23335					-0.007379806221706531
GLYEGLDWLA	10	Unmodified	_GLYEGLDWLA_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MSMS	OPSCC_40_ClassI_Rep-2	5	568.784423828125	2	568.784764	1135.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.64	1	94.518	94.018	95.018	-0.12215								0	0	0	0.27465	1	11676	11676		76.774	16.656	1				20417	18285	14134	14162	23336	23336					-0.007379806221706531
GLYEGLDWLA	10	Unmodified	_GLYEGLDWLA_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MSMS	OPSCC_40_ClassI_Rep-2	5	568.7857055664062	2	568.784764	1135.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.735	1	94.613	94.113	95.113	-0.12215								0	0	0	0.762	1	11689	11689		49.442	9.3834	1				20418	18285	14134	14162	23337	23337					-0.007379806221706531
GLYEGLDWLA	10	Unmodified	_GLYEGLDWLA_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.7843017578125	2	568.784764	1135.55498	-0.15697	-8.928E-05	-0.031907	-1.8148E-05	-0.18887	-0.00010743	568.7847181673227	94.706	0.6375	94.558	94.249	94.886	-0.14771					33	14	3	0	0	0	0.74632	2	11667	11667;11679		64.207	7.7735	1	528340			20419	18285	14134	14162	23338;23339	23338					-0.007379806221706531
GLYEGLTWL	9	Unmodified	_GLYEGLTWL_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.27685546875	2	526.276575	1050.5386	-0.77184	-0.0004062	0.70439	0.0003707	-0.067452	-3.5498E-05	526.2768610017745	94.634	1.3954	94.634	94.167	95.562	0					86	32	4	0	0	0	0.074956	5	12021	12021;12033;12045;12058;12070		119.56	43.109	1	2856400			20420	7428	14135	14163	23340;23341;23342;23343;23344	23340					0.015349382117165078
GLYEGLTWL	9	Unmodified	_GLYEGLTWL_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2769165039062	2	526.276575	1050.5386	-0.34464	-0.00018137	0.24937	0.00013124	-0.095271	-5.0139E-05	526.2766292286955	94.576	1.2287	94.576	94.072	95.301	-0.00022888					75	26	4	0	0	0	0.040175	4	11992	11981;11992;12004;12017		133.47	58.426	1	2688900			20421	7428	14135	14163	23345;23346;23347;23348	23346					0.015349382117165078
GLYEGLTWL	9	Unmodified	_GLYEGLTWL_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2764282226562	2	526.276575	1050.5386	-0.10582	-5.569E-05	0.0014135	7.4392E-07	-0.10441	-5.4946E-05	526.2764910392265	94.604	1.3148	94.608	94.168	95.483	0.0041199					78	28	4	0	0	0	0.049585	6	11969	11948;11957;11969;11982;11995;12007		128.86	52.087	1	3678500			20422	7428	14135	14163	23349;23350;23351;23352;23353;23354	23351					0.015349382117165078
GLYEGLTWL	9	Unmodified	_GLYEGLTWL_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2764892578125	2	526.276575	1050.5386	-0.83914	-0.00044162	0.58658	0.0003087	-0.25256	-0.00013292	526.276813730022	94.465	0.97234	94.327	93.921	94.894	-0.13779					55	22	4	0	0	0	0.22754	4	11627	11627;11638;11650;11663		85.359	22.053	1	1342900			20423	7428	14135	14163	23355;23356;23357;23358	23355					0.015349382117165078
GLYEGLTWL	9	Unmodified	_GLYEGLTWL_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2765502929688	2	526.276575	1050.5386	0.2643	0.0001391	-0.44273	-0.000233	-0.17842	-9.39E-05	526.2762319489236	94.524	0.88283	94.402	94.016	94.899	-0.12215					57	20	4	0	0	0	0.11848	4	11646	11646;11657;11670;11682		106.42	35.12	1	2172200			20424	7428	14135	14163	23359;23360;23361;23362	23359					0.015349382117165078
GLYEGLWMS	9	Unmodified	_GLYEGLWMS_					0	0	0		nc|ENSG00000164007|Q8N6F1-2|CLDN19;nc|ENSG00000164007|Q8N6F1-3|CLDN19;ENSG00000164007|ENST00000296387|CLDN19	nc|ENSG00000164007|Q8N6F1-2|CLDN19	nc|ENSG00000164007|Q8N6F1-2|CLDN19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.273681640625	2	528.24696	1054.47937	-1.4321	-0.0007565	-4.3466	-0.0022961	-5.7787	-0.0030526	528.2452886009261	91.965	0.45462	91.965	91.685	92.139	0					19	10	3	0	0	0	0.022484	1	11636	11636		94.006	25.22	1	214760			20425	7188	14136	14164	23363	23363					-0.04569281074122955
GLYEQAFQL	9	Unmodified	_GLYEQAFQL_					0	0	0		ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD	ENSG00000102871|ENST00000345057|TRADD	ENSG00000102871|ENST00000345057|TRADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.7725219726562	2	534.771657	1067.52876	-0.83321	-0.00044558	1.2797	0.00068435	0.4465	0.00023878	534.7721763025514	79.935	0.88436	79.935	79.573	80.457	0					35	19	3	0	0	0	0.34489	1	9930	9930		69.628	7.5202	1	757020			20426	2435	14137	14165	23364	23364					-0.0023024979368528875
GLYEQAFQL	9	Unmodified	_GLYEQAFQL_					0	0	0		ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD	ENSG00000102871|ENST00000345057|TRADD	ENSG00000102871|ENST00000345057|TRADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.772216796875	2	534.771657	1067.52876	-0.95204	-0.00050913	1.997	0.0010679	1.045	0.00055882	534.7721653104904	79.917	0.71266	79.939	79.645	80.358	0.021439					44	16	4	0	0	0	0.28753	1	9854	9854		77.318	10.888	1	649330			20427	2435	14137	14165	23365	23365					-0.0023024979368528875
GLYGAPRIL	9	Unmodified	_GLYGAPRIL_					0	0	0		ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8;ENST00000465475.5_1_3:124802831-124839525:-|nuORF;nc|ENSG00000221955|A0AV02-4|SLC12A8;ENST00000479352.5_1_3:124802736-124844777:-|nuORF;nc|ENSG00000221955|A0AV02-3|SLC12A8;ENST00000473262.5_1_3:124802736-124896678:-|nuORF	ENSG00000221955|ENST00000469902|SLC12A8	ENSG00000221955|ENST00000469902|SLC12A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2884216308594	2	480.287277	958.560001	1.125	0.00054034	-0.1653	-7.9392E-05	0.95973	0.00046095	480.287458687791	65.777	0.72943	65.777	65.494	66.224	0					61	18	4	0	0	0	0.64155	1	7805	7805		50.025	0.58299	1	6733900			20428	10627	14138	14166	23366	23366					0.07906368031081001
GLYPGLIWL	9	Unmodified	_GLYPGLIWL_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2998657226562	2	516.299853	1030.58515	-0.36416	-0.00018802	0.019932	1.0291E-05	-0.34423	-0.00017773	516.2999017348479	104.18	1.4423	104.18	103.81	105.25	-0.0032196					106	40	3	0	0	0	0.32257	1	13295	13295		72.62	1.242	1	7489400			20429	3643	14139	14167	23367	23367					0.07108422833653094
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7923583984375	2	508.792392	1015.57023	-0.88842	-0.00045202	0.676	0.00034395	-0.21242	-0.00010808	508.7926929632637	83.414	1.1627	83.414	83.095	84.258	0					47	26	2	0	0	0	0.034181	4	10450	10415;10425;10436;10450		138.24	28.779	1	4725300			20430	4576	14140	14168	23368;23369;23370;23371	23371					0.06306930965672564
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7923278808594	2	508.792392	1015.57023	-0.10402	-5.2925E-05	2.323	0.0011819	2.219	0.001129	508.7922462041695	83.478	2.5813	83.388	81.706	84.287	-0.090454					122	60	4	0	0	0	0.016838	4	10407	10385;10395;10407;10420		152.63	55.937	1	5248700			20431	4576	14140	14168	23372;23373;23374;23375	23374					0.06306930965672564
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7924499511719	2	508.792392	1015.57023	-0.8797	-0.00044758	2.047	0.0010415	1.1673	0.00059394	508.7926386865886	83.379	1.2893	83.405	83.003	84.292	0.026558					66	29	3	0	0	0	0.013805	4	10331	10331;10342;10356;10369		167.82	50.921	1	5365600			20432	4576	14140	14168	23376;23377;23378;23379	23376					0.06306930965672564
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.792724609375	2	508.792392	1015.57023	0.64792	0.00032966	-0.83047	-0.00042254	-0.18255	-9.2881E-05	508.7918686586795	83.454	0.9796	83.242	82.876	83.856	-0.21159					42	22	2	0	0	0	0.06122	2	10054	10054;10065		124.59	28.779	1	1355900			20433	4576	14140	14168	23380;23381	23380					0.06306930965672564
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.7927551269531	2	508.792392	1015.57023	0.32023	0.00016293	-0.56885	-0.00028943	-0.24863	-0.0001265	508.7919847015062	83.367	0.97276	83.198	82.905	83.878	-0.16916					39	22	2	0	0	0	0.034181	1	10067	10067		138.24	30.155	1	1345000			20434	4576	14140	14168	23382	23382					0.06306930965672564
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.79248046875	2	508.792392	1015.57023	-0.073242	-3.7265E-05	-0.27973	-0.00014232	-0.35297	-0.00017959	508.7921274755456	83.374	1.0224	83.235	82.91	83.932	-0.1386					40	23	2	0	0	0	0.016838	2	10058	10048;10058		152.63	29.408	1	1371900			20435	4576	14140	14168	23383;23384	23384					0.06306930965672564
GLYQDPVTL	9	Unmodified	_GLYQDPVTL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2670593261719	2	503.266207	1004.51786	0.6203	0.00031218	2.4152	0.0012155	3.0355	0.0015276	503.2671101528774	71.287	1.5544	71.287	70.241	71.795	0					102	38	3	0	0	0	0.51687	1	8646	8646		58.23	0	1	1599600			20436	5505	14141	14169	23385	23385					0.01578347832048621
GLYQDPVTL	9	Unmodified	_GLYQDPVTL_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.26751708984375	2	503.266207	1004.51786	0.44195	0.00022242	2.1233	0.0010686	2.5653	0.001291	503.26687609528545	71.671	1.4226	71.382	70.415	71.838	-0.28858					67	35	3	0	0	0	0.32811	1	8656	8656		71.877	7.6702	1	1393400			20437	5505	14141	14169	23386	23386					0.01578347832048621
GLYRVGAGP	9	Unmodified	_GLYRVGAGP_					0	0	0			REV__ENST00000411578.6_1_3:49941145-49941235:-|nuORF	REV__ENST00000411578.6_1_3:49941145-49941235:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2685241699219	2	445.248152	888.481751	-1.4364	-0.00063955	3.638	0.0016198	2.2016	0.00098025	445.24986114329715	28.976	0.47589	28.731	28.448	28.924	-0.24524					15	10	2	0	0	0	0.024466	1	1715	1715		25.45	13.243	1	607730	+		20438	31985	14142	14170	23387	23387					0.033049354458512425
GLYRWDLL	8	Unmodified	_GLYRWDLL_					0	0	0			REV__ENSG00000111713|ENST00000261195|GYS2	REV__ENSG00000111713|ENST00000261195|GYS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2965698242188	2	518.284734	1034.55492	-0.21384	-0.00011083	-2.2033	-0.0011419	-2.4171	-0.0012528	518.2834079652907	102.85	0.18374	102.85	102.79	102.98	-0.0046005					5	4	2	0	0	0	0.027866	1	13109	13109		65.803	0	1	154700	+		20439	21941	14143	14171	23388	23388					0.03902064168460129
GLYSADPSTL	10	Unmodified	_GLYSADPSTL_					0	0	0			REV__ENST00000556241.5_1_14:76088442-76101338:+|nuORF	REV__ENST00000556241.5_1_14:76088442-76101338:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.25341796875	2	512.253297	1022.49204	-0.65531	-0.00033569	-0.095915	-4.9133E-05	-0.75123	-0.00038482	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	1.0271	1	5752	5752		42.396	6.7778	1	53582000	+		20440	22476	14144	14172	23389	23389					-0.018305464102354563
GLYSADPSTL	10	Unmodified	_GLYSADPSTL_					0	0	0			REV__ENST00000556241.5_1_14:76088442-76101338:+|nuORF	REV__ENST00000556241.5_1_14:76088442-76101338:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2533569335938	2	512.253297	1022.49204	-0.12497	-6.4016E-05	-0.58698	-0.00030068	-0.71195	-0.0003647	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.96965	1	5769	5769		49.442	7.0454	1	54943000	+		20441	22476	14144	14172	23390	23390					-0.018305464102354563
GLYSLSSVVTV	11	Unmodified	_GLYSLSSVVTV_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.8132934570312	2	562.813522	1123.61249	0.57749	0.00032502	-0.53187	-0.00029934	0.045625	2.5679E-05	562.8130800642765	83.309	0.81303	83.097	82.704	83.517	-0.21159					63	18	5	0	0	0	0.012934	1	10048	10048		136.27	58.004	1	974190			20442	18703	14145	14173	23391	23391					0.05562861583371159
GLYSLSSVVTV	11	Unmodified	_GLYSLSSVVTV_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.8133544921875	2	562.813522	1123.61249	0.45903	0.00025835	-0.51591	-0.00029036	-0.056873	-3.2009E-05	562.8131206602005	83.317	0.84134	83.148	82.819	83.66	-0.16915					57	19	4	0	0	0	0.0028616	1	10055	10055		148.99	66.236	1	927420			20443	18703	14145	14173	23392	23392					0.05562861583371159
GLYSLSSVVTV	11	Unmodified	_GLYSLSSVVTV_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.8131103515625	2	562.813522	1123.61249	-0.16963	-9.5469E-05	0.1252	7.0463E-05	-0.044431	-2.5006E-05	562.8134437885071	83.266	0.80808	83.127	82.739	83.547	-0.13861					65	18	5	0	0	0	0.012934	2	10041	10041;10054		136.27	55.813	1	998540			20444	18703	14145	14173	23393;23394	23393					0.05562861583371159
GLYSLSSVVTV	11	Unmodified	_GLYSLSSVVTV_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	562.813522	1123.61249	0.11182	6.2935E-05	-0.87134	-0.0004904	-0.75952	-0.00042747	562.8139805909884	83.687	0.20627	83.549	83.465	83.671	-0.1386	0.26594	-0.00043558	NaN	148.99	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49483			20445	18703	14145	14173							0.05562861583371159
GLYWPVSII	9	Unmodified	_GLYWPVSII_					0	0	0			REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2974243164062	2	524.29731	1046.58007	0.21581	0.00011315	0.076836	4.0285E-05	0.29265	0.00015344	524.2972521633124	103.11	1.6176	103.1	102.68	104.29	-0.0046005					104	39	5	0	0	0	0.26797	1	13128	13128		79.939	3.1651	1	4345800	+		20446	20542	14146	14174	23395	23395					0.05864118971044263
GLYYRRVRKV	10	Unmodified	_GLYYRRVRKV_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4;nc|ENSG00000168418|Q8TDN1-2|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.5267028808594	3	437.266568	1308.77787	0.58348	0.00025514	2.4707	0.0010804	3.0542	0.0013355	437.26767245977993	52.069	1.2747	51.885	51.524	52.799	-0.18405					70	32	4	0	0	0	0.03519	1	5502	5502		11.636	3.2287	1	663690			20447	7822	14147	14175	23396	23396					0.13583557953529635
GMAAVCLTDMA	11	Carbamidomethyl (C),Oxidation (M)	_GM(Oxidation (M))AAVC(Carbamidomethyl (C))LTDMA_	GMAAVC(1)LTDMA	GM(1)AAVCLTDMA	GMAAVC(59)LTDMA	GM(59)AAVCLTDM(-59)A	0	1	1			REV__ENST00000525971.6_1_12:85430103-85431962:+|nuORF	REV__ENST00000525971.6_1_12:85430103-85431962:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.2435302734375	2	578.245777	1154.477	-0.36907	-0.00021341	-3.0693	-0.0017748	-3.4384	-0.0019882	578.2439840304891	65.415	1.0255	65.174	64.842	65.867	-0.24145					63	24	4	0	0	0	0.782	1	7473	7473		58.782	9.3404	2	1256600	+		20448	34425	14148	14176	23397	23397	452	935			-0.09405820865754322
GMEAGVQASCM	11	Carbamidomethyl (C),2 Oxidation (M)	_GM(Oxidation (M))EAGVQASC(Carbamidomethyl (C))M(Oxidation (M))_	GMEAGVQASC(1)M	GM(1)EAGVQASCM(1)	GMEAGVQASC(77)M	GM(77)EAGVQASCM(77)	0	1	2		nc|ENSG00000101298|O15079|SNPH;ENSG00000101298|ENST00000381867|SNPH	nc|ENSG00000101298|O15079|SNPH	nc|ENSG00000101298|O15079|SNPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.720703125	2	586.722666	1171.43078	-1.2572	-0.00073761	-1.673	-0.0009816	-2.9302	-0.0017192	586.7216185513205	29.22	0.89457	29.047	28.723	29.618	-0.17258					35	20	2	0	0	0	0.48498	1	1770	1770		77.318	19.088	1	939110			20449	2306	14149	14177	23398	23398	32	89;90			-0.1480788576784562
GMEAGVQASCM	11	Carbamidomethyl (C),2 Oxidation (M)	_GM(Oxidation (M))EAGVQASC(Carbamidomethyl (C))M(Oxidation (M))_					0	1	2		nc|ENSG00000101298|O15079|SNPH;ENSG00000101298|ENST00000381867|SNPH	nc|ENSG00000101298|O15079|SNPH	nc|ENSG00000101298|O15079|SNPH	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	586.722666	1171.43078	-0.94855	-0.00055653	-2.1472	-0.0012598	-3.0957	-0.0018163	586.7213549900043	28.954	0.725	28.805	28.529	29.254	-0.14952	-0.19293	-0.00036281	NaN	77.318	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789920			20450	2306	14149	14177			32	89;90			-0.1480788576784562
GMEEMRLNL	9	Unmodified	_GMEEMRLNL_					0	0	0			REV__ENSG00000226742|ENST00000451882|HSBP1L1	REV__ENSG00000226742|ENST00000451882|HSBP1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.275634765625	2	546.762452	1091.51035	-0.45238	-0.00024734	3.3815	0.0018489	2.9291	0.0016015	546.7639631588557	73.214	0.45056	72.942	72.678	73.129	-0.27126					17	10	2	0	0	0	0.024261	1	8899	8899		74.255	22.92	1	357580	+		20451	28876	14150	14178	23399	23399					-0.03174451031532044
GMERGPTR	8	Unmodified	_GMERGPTR_					0	0	0			REV__nc|ENSG00000082438|Q53SF7-2|COBLL1	REV__nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.2284851074219	2	452.226894	902.439234	0.55673	0.00025177	2.1279	0.0009623	2.6846	0.0012141	452.2279602715293	102.95	1.6983	102.82	102.36	104.06	-0.12723					80	40	5	0	0	0	1.0516	1	12769	12769		29.15	0.89528	1	2221600	+		20452	36486	14151	14179	23400	23400					-0.015887829540247367
GMFNGIISI	9	Unmodified	_GMFNGIISI_					0	0	0		nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF	nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-9|IFT122	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.2521667480469	2	476.252046	950.489538	-0.45829	-0.00021826	0.85447	0.00040694	0.39618	0.00018868	476.25224270399224	90.785	0.62161	90.785	90.511	91.133	0					42	14	4	0	0	0	0.23085	1	11484	11484		84.916	8.0689	1	1731000			20453	7169	14152	14180	23401	23401					0.012313266511227994
GMFNGIISI	9	Oxidation (M)	_GM(Oxidation (M))FNGIISI_		GM(1)FNGIISI		GM(94)FNGIISI	0	0	1		nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF	nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-9|IFT122	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.24969482421875	2	484.249503	966.484453	-0.75021	-0.00036329	1.0219	0.00049486	0.27171	0.00013158	484.24974646650077	79.87	1.4562	79.891	79.316	80.773	0.021439					78	34	3	0	0	0	0.17455	1	9821	9821		94.006	22.711	1	1769800			20454	7169	14152	14181	23402	23402		299			-0.00012977211497400276
GMFSSTEPTV	10	Oxidation (M)	_GM(Oxidation (M))FSSTEPTV_		GM(1)FSSTEPTV		GM(57)FSSTEPTV	0	0	1		NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant;nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2384643554688	2	536.23679	1070.45903	-1.3189	-0.00070723	4.0484	0.0021709	2.7295	0.0014637	536.2389379429719	60.755	1.2972	60.579	60.28	61.577	-0.1761					80	31	6	0	0	0	0.85955	1	6800	6800		56.721	12.604	1	4527600			20455	2443	14153	14182	23403	23403		93			-0.07338496524585025
GMGDPITTPT	10	Unmodified	_GMGDPITTPT_					0	0	0			REV__ENSG00000073282|ENST00000264731|TP63	REV__ENSG00000073282|ENST00000264731|TP63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.28924560546875	2	495.23405	988.453547	0.79324	0.00039284	1.9705	0.00097587	2.7638	0.0013687	495.233758194243	58.625	0.14804	58.625	58.495	58.643	0					5	3	2	0	0	0	0.03519	1	6634	6634		60.972	0	1	77804	+		20456	20497	14154	14183	23404	23404					-0.04114175316431101
GMGFCDDVSL	10	Unmodified	_GMGFCDDVSL_					0	0	0			REV__ENSG00000072682|ENST00000360568|P4HA2	REV__ENSG00000072682|ENST00000360568|P4HA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.8163452148438	2	522.21226	1042.40997	-0.84964	-0.00044369	4.2729	0.0022314	3.4233	0.0017877	522.2143239507029	65.053	0.52858	64.851	64.617	65.146	-0.20254					23	12	3	0	0	0	0.03519	1	7409	7409		20.947	0	1	296640	+		20457	20477	14155	14184	23405	23405					-0.10954108085184089
GMGTILESAE	10	Unmodified	_GMGTILESAE_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.76678466796875	2	504.239332	1006.46411	-0.20384	-0.00010278	-3.3342	-0.0016812	-3.538	-0.001784	504.23678320166965	64.236	0.24161	64.008	63.825	64.066	-0.22773					6	5	2	0	0	0	0.03519	1	7270	7270		35.618	12.576	1	72903			20458	10874	14156	14185	23406	23406					-0.038861926619802034
GMGTILESAE	10	Unmodified	_GMGTILESAE_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.239332	1006.46411	-0.12673	-6.3901E-05	-0.33604	-0.00016944	-0.46276	-0.00023334	504.23929730005113	64.101	0.40103	63.85	63.765	64.166	-0.25141	-0.079043	0.0019702	NaN	27.882	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103220			20459	10874	14156	14185							-0.038861926619802034
GMIASLGVGGL	11	Oxidation (M)	_GM(Oxidation (M))IASLGVGGL_		GM(1)IASLGVGGL		GM(85)IASLGVGGL	0	0	1			REV__ENSG00000187758|ENST00000209668|ADH1A	REV__ENSG00000187758|ENST00000209668|ADH1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7660827636719	2	495.76806	989.521567	0.1322	6.5541E-05	-3.9173	-0.0019421	-3.7851	-0.0018765	495.7659991884084	56.123	0.75116	55.907	55.562	56.313	-0.21607					48	19	3	0	0	0	0.36819	1	6060	6060		84.916	8.1414	1	1759700	+		20460	27969	14157	14186	23407	23407		831			0.026386943342799896
GMKLERYIW	9	Oxidation (M)	_GM(Oxidation (M))KLERYIW_		GM(1)KLERYIW		GM(58)KLERYIW	0	0	1		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.3141479492188	2	606.315709	1210.61686	-0.68263	-0.00041389	-2.038	-0.0012357	-2.7206	-0.0016496	606.3141508432425	78.683	1.0182	78.428	78.127	79.145	-0.25471					58	23	5	0	0	0	0.51687	1	9383	9383		58.23	10.573	1	810370			20461	7595	14158	14187	23408	23408		313			0.019980475252850738
GMKLERYIW	9	Oxidation (M)	_GM(Oxidation (M))KLERYIW_		GM(1)KLERYIW		GM(53)KLERYIW	0	0	1		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.3145751953125	2	606.315709	1210.61686	-0.17657	-0.00010706	-2.822	-0.001711	-2.9986	-0.0018181	606.3137998005167	78.468	0.77223	78.312	78.043	78.815	-0.15591					50	17	4	0	0	0	0.5973	1	9370	9370		52.937	6.9645	1	1042500			20462	7595	14158	14187	23409	23409		313			0.019980475252850738
GMKLQCVSL	9	Unmodified	_GMKLQCVSL_					0	0	0		nc|ENSG00000142224|Q9UHD0-2|IL19	nc|ENSG00000142224|Q9UHD0-2|IL19	nc|ENSG00000142224|Q9UHD0-2|IL19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2927551269531	2	489.759181	977.503808	-1.8423	-0.0009023	-0.12705	-6.2222E-05	-1.9694	-0.00096452	489.76014768082797	60.46	0.44957	60.539	60.429	60.879	0.078888					18	11	2	0	0	0	0.02435	1	6894	6894		51.335	1.8939	1	110950			20463	18344	14159	14188	23410	23410					0.014156558077502268
GMKPPLTEV	9	Oxidation (M)	_GM(Oxidation (M))KPPLTEV_		GM(1)KPPLTEV		GM(79)KPPLTEV	0	0	1		ENST00000503611.5_1_4:159093559-159120336:+|nuORF	ENST00000503611.5_1_4:159093559-159120336:+|nuORF	ENST00000503611.5_1_4:159093559-159120336:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2637939453125	2	494.26261	986.510668	0.4533	0.00022405	-1.6355	-0.00080835	-1.1822	-0.0005843	494.2619308753109	74.724	1.0067	74.541	74.18	75.187	-0.18279					54	23	4	0	0	0	0.27161	1	8805	8805		79.451	7.5735	1	709990			20464	15695	14160	14189	23411	23411		523			0.016872919599677516
GMKTKLFV	8	Oxidation (M)	_GM(Oxidation (M))KTKLFV_		GM(1)KTKLFV		GM(45)KTKLFV	0	0	1			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2729187011719	2	470.270238	938.525924	-0.28978	-0.00013628	4.2401	0.001994	3.9503	0.0018577	470.27214421376374	88.709	1.0384	88.539	88.297	89.335	-0.17054					41	24	2	0	0	0	0.95417	1	10816	10816		44.531	17.735	1	351370	+		20465	21032	14161	14190	23412	23412		644			0.054202035478283506
GMKTKLFV	8	Oxidation (M)	_GM(Oxidation (M))KTKLFV_					0	0	1			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.270238	938.525924	0.7037	0.00033093	3.4411	0.0016183	4.1448	0.0019492	470.2718652163119	88.491	1.0996	88.491	88.128	89.228	0	-0.067934	-0.00024831	NaN	44.531	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330990	+		20466	21032	14161	14190				644			0.054202035478283506
GMKTKLFV	8	Oxidation (M)	_GM(Oxidation (M))KTKLFV_					0	0	1			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	470.270238	938.525924	1.0003	0.0004704	3.3354	0.0015685	4.3357	0.0020389	470.27177981377275	88.62	1.1024	88.592	88.133	89.235	-0.027664	0.033076	-0.00034779	NaN	44.531	47	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335110	+		20467	21032	14161	14190				644			0.054202035478283506
GMKTKLFV	8	Oxidation (M)	_GM(Oxidation (M))KTKLFV_					0	0	1			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.270238	938.525924	1.0255	0.00048227	3.0128	0.0014168	4.0383	0.0018991	470.2716100777873	88.586	1.1918	88.602	88.236	89.428	0.015907	0.042487	-0.00065121	NaN	44.531	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314390	+		20468	21032	14161	14190				644			0.054202035478283506
GMKTKLFV	8	Oxidation (M)	_GM(Oxidation (M))KTKLFV_					0	0	1			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	470.270238	938.525924	-0.28978	-0.00013628	4.2401	0.001994	3.9503	0.0018577	470.27214421376374	88.709	1.0384	88.539	88.297	89.335	-0.17054	-0.020315	0.00050311	NaN	44.531	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351370	+		20469	21032	14161	14190				644			0.054202035478283506
GMLDGLVNV	9	Unmodified	_GMLDGLVNV_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.24151611328125	2	459.241678	916.468803	1.0008	0.0004596	-0.58888	-0.00027044	0.41189	0.00018916	459.24125353050556	85.895	1.1904	85.895	85.584	86.775	0					47	27	3	0	0	0	0.057894	1	10781	10781		125.81	48.967	1	859570			20470	1603	14162	14191	23413	23413					0.007227362714502306
GMLDGLVNV	9	Unmodified	_GMLDGLVNV_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2408752441406	2	459.241678	916.468803	-0.053912	-2.4759E-05	0.25966	0.00011925	0.20575	9.4488E-05	459.2416923763371	85.883	0.97111	85.826	85.439	86.411	-0.057617					43	22	3	0	0	0	0.16638	1	10752	10752		95.815	10.456	1	698550			20471	1603	14162	14191	23414	23414					0.007227362714502306
GMLDGLVNV	9	Unmodified	_GMLDGLVNV_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2414855957031	2	459.241678	916.468803	-0.50466	-0.00023176	0.78673	0.0003613	0.28207	0.00012954	459.24186812926234	85.855	0.9286	85.879	85.534	86.462	0.023666					46	21	3	0	0	0	0.091713	2	10694	10694;10704		113.41	36.565	1	1015500			20472	1603	14162	14191	23415;23416	23415					0.007227362714502306
GMLDGLVNV	9	Unmodified	_GMLDGLVNV_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.240966796875	2	459.241678	916.468803	0.63411	0.00029121	-0.31519	-0.00014475	0.31892	0.00014646	459.24147787145677	85.906	0.86226	85.756	85.451	86.313	-0.14967					38	19	3	0	0	0	0.14024	1	10435	10435		101.6	33.116	1	488080			20473	1603	14162	14191	23417	23417					0.007227362714502306
GMLDGLVNV	9	Unmodified	_GMLDGLVNV_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2410583496094	2	459.241678	916.468803	0.40981	0.0001882	-0.16916	-7.7685E-05	0.24065	0.00011051	459.2414928928492	85.938	0.81846	85.801	85.494	86.312	-0.13734					39	18	3	0	0	0	0.12602	1	10414	10414		104.75	36.262	1	499520			20474	1603	14162	14191	23418	23418					0.007227362714502306
GMLDGLVNV	9	Unmodified	_GMLDGLVNV_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	459.241678	916.468803	0.29188	0.00013404	-0.065305	-2.9991E-05	0.22657	0.00010405	459.2415830392001	85.976	0.82089	85.781	85.469	86.29	-0.19508	-0.04144	-2.6366E-05	NaN	125.81	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361450			20475	1603	14162	14191							0.007227362714502306
GMLISLAVL	9	Oxidation (M)	_GM(Oxidation (M))LISLAVL_		GM(1)LISLAVL		GM(58)LISLAVL	0	0	1			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.7800598144531	2	466.777896	931.54124	0.74617	0.0003483	3.4559	0.0016132	4.2021	0.0019615	466.77942299327685	19.282	0.54594	19.082	18.859	19.405	-0.2001					16	10	2	0	0	0	0.52323	1	403	403		57.811	7.7867	1	209720	+		20476	24336	14163	14192	23419	23419		722			0.07273070345013366
GMLISLAVL	9	Oxidation (M)	_GM(Oxidation (M))LISLAVL_					0	0	1			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	466.777896	931.54124	0.74617	0.0003483	3.4559	0.0016132	4.2021	0.0019615	466.77942299327685	19.282	0.54594	19.082	18.859	19.405	-0.2001	0.029615	0.00019132	NaN	57.811	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209720	+		20477	24336	14163	14192				722			0.07273070345013366
GMLISLAVL	9	Oxidation (M)	_GM(Oxidation (M))LISLAVL_					0	0	1			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.777896	931.54124	1.6317	0.00076165	2.762	0.0012893	4.3938	0.0020509	466.77916811389537	19.249	0.39679	19.015	18.878	19.275	-0.23345	-0.036743	-0.00045648	NaN	57.811	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39196	+		20478	24336	14163	14192				722			0.07273070345013366
GMLLGDTIIL	10	Unmodified	_GMLLGDTIIL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3037719726562	2	523.301736	1044.58892	0.47324	0.00024765	2.705	0.0014155	3.1782	0.0016632	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	1.0142	1	10733	10733		44.117	4.864	1	13836000			20479	2338	14164	14193	23420	23420					0.06840724545213561
GMLLKLKTT	9	Unmodified	_GMLLKLKTT_					0	0	0		ENST00000534155.1_2_8:38205621-38239332:-|nuORF	ENST00000534155.1_2_8:38205621-38239332:-|nuORF	ENST00000534155.1_2_8:38205621-38239332:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.8139953613281	2	502.81227	1003.60999	0.69855	0.00035124	2.14	0.001076	2.8385	0.0014272	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	0.92825	1	11983	11983		30.504	0.6621	1	14776000			20480	16325	14165	14194	23421	23421					0.10832734644725406
GMLLLSLAW	9	Oxidation (M)	_GM(Oxidation (M))LLLSLAW_		GM(1)LLLSLAW		GM(89)LLLSLAW	0	0	1			REV__ENSG00000173335|ENST00000376971|CST9	REV__ENSG00000173335|ENST00000376971|CST9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2815856933594	2	510.283346	1018.55214	-0.23334	-0.00011907	-1.3647	-0.0006964	-1.5981	-0.00081547	510.28266200220463	97.848	0.91312	97.683	96.991	97.904	-0.1652					37	20	2	0	0	0	0.20304	1	12037	12037		88.643	6.3378	1	283010	+		20481	26767	14166	14195	23422	23422		790			0.043604727192928294
GMLLQSEGQ	9	Unmodified	_GMLLQSEGQ_					0	0	0			REV__ENST00000493513.1_1_1:171154462-171155083:+|nuORF	REV__ENST00000493513.1_1_1:171154462-171155083:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.7364196777344	2	481.734217	961.453881	5.6029	0.0026991	-1.5609	-0.00075196	4.042	0.0019471	481.73330067700635	16.948	0.86658	16.694	16.31	17.176	-0.25378					32	24	2	0	0	0	1.0051	1	99	99		19.36	1.0356	1	30058	+		20482	33765	14167	14196	23423	23423					-0.028387555965423417
GMLMLLIIP	9	Unmodified	_GMLMLLIIP_					0	0	0			REV__ENST00000472475.1_3_3:121449814-121467982:-|nuORF	REV__ENST00000472475.1_3_3:121449814-121467982:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.28277587890625	2	500.800317	999.586081	0.47618	0.00023847	4.0068	0.0020066	4.4829	0.0022451	501.30468222639064	97.062	1.1045	97.071	96.356	97.46	0.0089111					48	24	3	0	0	0	0.024541	1	12347	12347		29.842	3.0454	1	209130	+		20483	33206	14168	14197	23424	23424					0.08627177886705795
GMLPSPNQV	9	Unmodified	_GMLPSPNQV_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2745361328125	2	471.739302	941.464052	0.29534	0.00013932	-3.6599	-0.0017265	-3.3646	-0.0015872	471.7375071372499	42.475	0.48351	42.343	42.082	42.565	-0.1322					19	13	2	0	0	0	0.02435	1	3861	3861		42.396	0	1	158060			20484	11067	14169	14198	23425	23425					-0.009021478713066244
GMLTETILL	9	Unmodified	_GMLTETILL_					0	0	0			REV__ENST00000304032.12_1_2:237036554-237036818:+|nuORF	REV__ENST00000304032.12_1_2:237036554-237036818:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.7804260253906	2	495.780636	989.546719	0.47419	0.0002351	-0.73086	-0.00036234	-0.25666	-0.00012725	495.7801047992268	89.182	0.79597	89.182	88.809	89.605	0					54	18	4	0	0	0	0.29104	1	11261	11261		76.847	11.043	1	1613400	+		20485	30100	14170	14199	23426	23426					0.05152749136846069
GMLTETILL	9	Unmodified	_GMLTETILL_					0	0	0			REV__ENST00000304032.12_1_2:237036554-237036818:+|nuORF	REV__ENST00000304032.12_1_2:237036554-237036818:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.78057861328125	2	495.780636	989.546719	-0.16297	-8.0795E-05	0.010098	5.0064E-06	-0.15287	-7.5789E-05	495.78043976460424	89.154	0.75505	89.027	88.701	89.456	-0.12775					47	17	3	0	0	0	0.40179	1	10921	10921		65.803	12.452	1	1711000	+		20486	30100	14170	14199	23427	23427					0.05152749136846069
GMMFPVLGPR	10	Unmodified	_GMMFPVLGPR_					0	0	0		nc|ENSG00000131370|O60239-2|SH3BP5;ENSG00000131370|ENST00000383791|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	nc|ENSG00000131370|O60239-2|SH3BP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.791748046875	2	552.788272	1103.56199	4.1376	0.0022872	2.3762	0.0013135	6.5137	0.0036007	552.7894629293903	17.696	0.59088	17.446	17.276	17.867	-0.25049					17	11	3	0	0	0	1.1267	1	192	192		29.15	1.2673	1	84110			20487	4511	14171	14200	23428	23428					0.014353374530401197
GMNPGTVLVCY	11	Oxidation (M)	_GM(Oxidation (M))NPGTVLVCY_		GM(1)NPGTVLVCY		GM(46)NPGTVLVCY	0	0	1			REV__nc|ENSG00000116062|P52701-4|MSH6	REV__nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2749633789062	2	585.270109	1168.52567	-0.34642	-0.00020275	0.94181	0.00055121	0.59539	0.00034846	585.2699024041938	76.523	0.82707	76.254	75.854	76.681	-0.26806					46	19	4	0	0	0	0.95882	1	9093	9093		45.972	8.8131	1	858770	+		20488	22255	14172	14201	23429	23429		662			-0.05185584234345697
GMPSVLIIQQV	11	Oxidation (M)	_GM(Oxidation (M))PSVLIIQQV_		GM(1)PSVLIIQQV		GM(54)PSVLIIQQV	0	0	1			REV__ENSG00000138768|ENST00000514213|USO1	REV__ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.894775390625	3	400.893408	1199.65839	1.1235	0.00045042	1.9307	0.00077398	3.0542	0.0012244	400.8942010306212	26.454	0.61718	26.454	26.124	26.741	0					47	14	4	0	0	0	0.86757	1	1350	1350		53.597	8.9574	1	3021700	+		20489	23895	14173	14202	23430	23430		709			0.06655183493967343
GMSMSPMKSM	10	2 Oxidation (M)	_GM(Oxidation (M))SMSPMKSM(Oxidation (M))_		GM(0.499)SM(0.499)SPM(0.002)KSM(1)		GM(0)SM(0)SPM(-23)KSM(98)	0	0	2		ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2169189453125	2	559.721081	1117.42761	-0.68498	-0.0003834	-4.4225	-0.0024754	-5.1075	-0.0028588	559.7194115928453	43.829	0.56185	43.724	43.434	43.996	-0.10468					27	14	4	0	0	0	0.03519	1	4058	4058		113.41	23.042	6	1148400			20490	10815	14174	14203	23431	23431		451;452;453;454			-0.12640852146182624
GMSMSPMKSM	10	2 Oxidation (M)	_GMSMSPM(Oxidation (M))KSM(Oxidation (M))_		GM(0.022)SM(0.022)SPM(0.956)KSM(0.999)		GM(-16)SM(-16)SPM(16)KSM(33)	0	0	2		ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2985229492188	2	559.721081	1117.42761	-0.94463	-0.00052873	-4.287	-0.0023995	-5.2317	-0.0029283	559.717748437447	38.366	0.34663	38.187	38.035	38.381	-0.17929					13	9	2	0	0	0	0.03519	1	3162	3162		58.782	30.9	6	146590			20491	10815	14174	14203	23432	23432		451;452;453;454			-0.12640852146182624
GMSMSPMKSM	10	2 Oxidation (M)	_GMSMSPM(Oxidation (M))KSM(Oxidation (M))_					0	0	2		ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.721081	1117.42761	-0.83926	-0.00046975	-6.6269	-0.0037092	-7.4662	-0.004179	559.7171700968008	38.222	0.2892	38.003	37.828	38.117	-0.21848	-0.089864	-0.00054278	NaN	58.782	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273200			20492	10815	14174	14203				451;452;453;454			-0.12640852146182624
GMTPVFTDWY	10	Oxidation (M)	_GM(Oxidation (M))TPVFTDWY_		GM(1)TPVFTDWY		GM(69)TPVFTDWY	0	0	1		ENSG00000141665|ENST00000419743|FBXO15;nc|ENSG00000141665|Q8NCQ5-2|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	616.3250122070312	2	616.768257	1231.52196	-1.1943	-0.00073658	-1.3917	-0.00085837	-2.586	-0.001595	616.7675299186336	57.664	0.50578	57.486	57.169	57.675	-0.17775					31	12	3	0	0	0	0.03519	1	6288	6288		68.787	12.066	1	205840			20493	5516	14175	14204	23433	23433		236			-0.08453930736550319
GMVLPHLL	8	Unmodified	_GMVLPHLL_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.2745361328125	2	440.259674	878.504795	0.089318	3.9323E-05	-0.73522	-0.00032369	-0.6459	-0.00028436	440.25963242786446	43.078	0.21826	42.938	42.773	42.991	-0.13929					9	5	2	0	0	0	0.027866	1	3967	3967		24.504	0	1	81914	+		20494	36998	14176	14205	23434	23434					0.060682382389586564
GMVSMRQLFI	10	Oxidation (M)	_GM(Oxidation (M))VSMRQLFI_		GM(0.992)VSM(0.008)RQLFI		GM(21)VSM(-21)RQLFI	0	0	1			REV__ENST00000359042.6_1_17:71232297-71232348:+|nuORF	REV__ENST00000359042.6_1_17:71232297-71232348:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	599.3108520507812	2	599.309569	1196.60458	-1.6653	-0.00099802	4.4132	0.0026449	2.7479	0.0016469	599.3121665801478	82.696	0.94572	82.696	82.363	83.309	0					49	21	3	0	0	0	0.23335	2	10326	10326;10336		116.9	12.89	2	799580	+		20495	30872	14177	14206	23435;23436	23435		870			0.014146877905886868
GMVSMRQLFI	10	Oxidation (M)	_GM(Oxidation (M))VSMRQLFI_		GM(0.863)VSM(0.137)RQLFI		GM(8)VSM(-8)RQLFI	0	0	1			REV__ENST00000359042.6_1_17:71232297-71232348:+|nuORF	REV__ENST00000359042.6_1_17:71232297-71232348:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	599.7822875976562	2	599.309569	1196.60458	0.17215	0.00010317	1.6068	0.00096297	1.779	0.0010661	599.3103656109657	82.758	0.52032	82.538	82.347	82.867	-0.22015					23	11	3	0	0	0	0.03519	1	9968	9968		87.696	25.589	2	196970	+		20496	30872	14177	14206	23437	23437		870			0.014146877905886868
GMWRFYTED	9	Unmodified	_GMWRFYTED_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	601.76318359375	2	602.758223	1203.50189	-0.28019	-0.00016889	-1.3916	-0.00083882	-1.6718	-0.0010077	602.7570650166471	51.783	0.18562	51.664	51.61	51.796	-0.11875					5	4	2	0	0	0	0.024473	1	5348	5348		42.396	18.873	1	71786			20497	2815	14178	14207	23438	23438					-0.09171681676502885
GMYETPLFL	9	Oxidation (M)	_GM(Oxidation (M))YETPLFL_		GM(1)YETPLFL		GM(100)YETPLFL	0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.762451171875	2	543.762443	1085.51033	-0.87081	-0.00047351	1.2546	0.00068219	0.38377	0.00020868	543.7627828558142	84.132	1.2286	84.132	83.605	84.834	0					92	28	5	0	0	0	0.14199	2	10541	10528;10541		101.21	34.166	1	1592400			20498	1102	14179	14208	23439;23440	23440		33			-0.029001277598808883
GMYETPLFL	9	Oxidation (M)	_GM(Oxidation (M))YETPLFL_		GM(1)YETPLFL		GM(77)YETPLFL	0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.7622680664062	2	543.762443	1085.51033	-1.4945	-0.00081265	1.7091	0.00092934	0.2146	0.00011669	543.7630417657059	84.13	1.146	84.057	83.528	84.674	-0.072769					91	26	5	0	0	0	0.29104	1	10489	10489		76.847	8.3619	1	1495900			20499	1102	14179	14208	23441	23441		33			-0.029001277598808883
GMYETPLFL	9	Oxidation (M)	_GM(Oxidation (M))YETPLFL_		GM(1)YETPLFL		GM(100)YETPLFL	0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.7622680664062	2	543.762443	1085.51033	-1.3138	-0.00071438	1.5274	0.00083054	0.21364	0.00011617	543.7630002857842	84.047	1.4454	84.074	83.427	84.872	0.026558					103	33	5	0	0	0	0.14199	1	10440	10440		101.21	21.272	1	1544300			20500	1102	14179	14208	23442	23442		33			-0.029001277598808883
GMYETPLFL	9	Oxidation (M)	_GM(Oxidation (M))YETPLFL_					0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.762443	1085.51033	0.25975	0.00014124	1.2508	0.00068015	1.5106	0.00082139	543.7631035836343	84.189	0.81003	83.986	83.692	84.502	-0.20329	-0.077476	-0.00026073	NaN	101.21	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271840			20501	1102	14179	14208				33			-0.029001277598808883
GMYETPLFL	9	Oxidation (M)	_GM(Oxidation (M))YETPLFL_					0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.762443	1085.51033	0.43331	0.00023562	1.206	0.00065576	1.6393	0.00089138	543.7628408222643	84.235	0.90231	84.076	83.628	84.53	-0.15869	0.012383	-0.00030951	NaN	101.21	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227640			20502	1102	14179	14208				33			-0.029001277598808883
GMYETPLFL	9	Oxidation (M)	_GM(Oxidation (M))YETPLFL_					0	0	1		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.762443	1085.51033	-0.23786	-0.00012934	1.9472	0.0010588	1.7093	0.00092947	543.7632926459571	84.195	0.69303	84.057	83.672	84.365	-0.13789	-0.0067965	0.00049661	NaN	101.21	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196580			20503	1102	14179	14208				33			-0.029001277598808883
GMYETPLFL	9	Unmodified	_GMYETPLFL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7649536132812	2	535.764986	1069.51542	-1.5423	-0.00082632	1.8089	0.00096915	0.26661	0.00014284	535.7656777948969	90.44	0.79625	90.44	90.133	90.929	0					64	18	5	0	0	0	0.20304	2	11429	11429;11441		88.643	25.337	1	1312200			20504	1102	14179	14209	23443;23444	23443					-0.0165582389724932
GMYETPLFL	9	Unmodified	_GMYETPLFL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7649536132812	2	535.764986	1069.51542	-0.4879	-0.0002614	0.84649	0.00045352	0.3586	0.00019212	535.7651659694675	90.445	0.83162	90.428	90.116	90.948	-0.016716					63	19	5	0	0	0	0.20304	2	11407	11395;11407		88.643	30.832	1	1337100			20505	1102	14179	14209	23445;23446	23446					-0.0165582389724932
GMYETPLFL	9	Unmodified	_GMYETPLFL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7644653320312	2	535.764986	1069.51542	-0.3392	-0.00018173	0.50873	0.00027256	0.16953	9.083E-05	535.7650042923042	90.474	0.79181	90.488	90.161	90.952	0.013443					58	18	5	0	0	0	0.062871	2	11354	11354;11365		123.99	55.504	1	1413500			20506	1102	14179	14209	23447;23448	23447					-0.0165582389724932
GMYETPLFL	9	Unmodified	_GMYETPLFL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.764986	1069.51542	-1.2413	-0.00066506	1.8194	0.00097479	0.5781	0.00030972	535.7658073919662	90.389	0.5769	90.233	89.983	90.56	-0.1552	-0.11223	0.00081366	NaN	123.99	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238080			20507	1102	14179	14209							-0.0165582389724932
GMYETPLFL	9	Unmodified	_GMYETPLFL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.764986	1069.51542	-1.0326	-0.00055324	-0.078628	-4.2126E-05	-1.1112	-0.00059536	535.7656899999322	90.349	0.61691	90.224	89.97	90.587	-0.12512	-0.12159	-0.0012202	NaN	123.99	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189540			20508	1102	14179	14209							-0.0165582389724932
GMYETPLFL	9	Unmodified	_GMYETPLFL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.764986	1069.51542	-0.262	-0.00014037	0.35032	0.00018769	0.08832	4.7319E-05	535.7651472959943	90.399	0.66715	90.261	90.037	90.704	-0.13824	-0.084764	-0.00076054	NaN	123.99	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175650			20509	1102	14179	14209							-0.0165582389724932
GMYIFLHTV	9	Oxidation (M)	_GM(Oxidation (M))YIFLHTV_		GM(1)YIFLHTV		GM(150)YIFLHTV	0	0	1		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.7771606445312	2	548.778428	1095.5423	0.095967	5.2665E-05	-0.69924	-0.00038373	-0.60327	-0.00033106	548.7779175812644	64.291	1.6486	64.291	63.917	65.566	0					99	45	4	0	0	0	0.016588	3	7544	7544;7554;7566		153.88	92.913	1	7750600			20510	8236	14180	14210	23449;23450;23451	23449		341			-0.0016471528608690278
GMYIFLHTV	9	Oxidation (M)	_GM(Oxidation (M))YIFLHTV_		GM(1)YIFLHTV		GM(160)YIFLHTV	0	0	1		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.7782592773438	2	548.778428	1095.5423	-1.2287	-0.00067429	0.78376	0.00043011	-0.44495	-0.00024418	548.7787256621395	64.569	1.4014	64.306	63.939	65.34	-0.2626					97	37	4	0	0	0	0.015333	3	7551	7551;7560;7572		160.17	88.419	1	7255400			20511	8236	14180	14210	23452;23453;23454	23452		341			-0.0016471528608690278
GMYIFLHTV	9	Oxidation (M)	_GM(Oxidation (M))YIFLHTV_		GM(1)YIFLHTV		GM(150)YIFLHTV	0	0	1		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.7779541015625	2	548.778428	1095.5423	-0.043847	-2.4062E-05	-0.5993	-0.00032888	-0.64314	-0.00035294	548.7779863611364	64.27	1.1491	64.315	64.046	65.195	0.045502					85	30	4	0	0	0	0.016588	3	7466	7466;7476;7488		153.88	88.419	1	7984100			20512	8236	14180	14210	23455;23456;23457	23455		341			-0.0016471528608690278
GMYIFLHTV	9	Oxidation (M)	_GM(Oxidation (M))YIFLHTV_		GM(1)YIFLHTV		GM(110)YIFLHTV	0	0	1		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.7778930664062	2	548.778428	1095.5423	-0.30173	-0.00016558	0.53979	0.00029622	0.23805	0.00013064	548.7785140245804	72.792	0.89769	72.515	72.154	73.051	-0.2769					52	20	3	0	0	0	0.10076	1	8544	8544		110.34	55.573	1	851860			20513	8236	14180	14210	23458	23458		341			-0.0016471528608690278
GMYIFLHTV	9	Oxidation (M)	_GM(Oxidation (M))YIFLHTV_					0	0	1		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.778428	1095.5423	-0.53654	-0.00029444	0.119	6.5303E-05	-0.41754	-0.00022914	548.7783872824328	64.563	0.67009	64.328	64.098	64.768	-0.2345	0.016183	0.00017627	NaN	160.17	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081900			20514	8236	14180	14210				341			-0.0016471528608690278
GMYIFLHTV	9	Oxidation (M)	_GM(Oxidation (M))YIFLHTV_					0	0	1		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.778428	1095.5423	-0.29887	-0.00016402	0.090079	4.9433E-05	-0.20879	-0.00011458	548.778313926514	64.523	0.83278	64.32	64.066	64.899	-0.20254	0.0080558	0.00014453	NaN	160.17	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024400			20515	8236	14180	14210				341			-0.0016471528608690278
GMYIFLHTV	9	Unmodified	_GMYIFLHTV_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7838134765625	2	540.78097	1079.54739	-0.43427	-0.00023484	0.13321	7.204E-05	-0.30105	-0.0001628	540.7810947365398	72.538	1.4619	72.538	72.054	73.516	0					92	35	4	0	0	0	0.013308	2	8841	8841;8854		170.31	98.936	1	3262500			20516	8236	14180	14211	23459;23460	23459					0.010795885765219282
GMYIFLHTV	9	Unmodified	_GMYIFLHTV_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.7839965820312	2	540.78097	1079.54739	-0.090365	-4.8868E-05	0.062686	3.3899E-05	-0.027679	-1.4968E-05	540.7809088890378	72.899	1.1857	72.618	72.303	73.489	-0.28124					85	29	4	0	0	0	0.033883	2	8858	8858;8872		138.48	64.505	1	3222000			20517	8236	14180	14211	23461;23462	23461					0.010795885765219282
GMYIFLHTV	9	Unmodified	_GMYIFLHTV_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7838745117188	2	540.78097	1079.54739	-0.25453	-0.00013765	0.33907	0.00018336	0.084531	4.5713E-05	540.7810300631359	72.595	1.2709	72.605	72.169	73.44	0.0097733					93	31	4	0	0	0	0.013308	2	8769	8769;8783		170.31	90.374	1	3456900			20518	8236	14180	14211	23463;23464	23463					0.010795885765219282
GMYIFLHTV	9	Unmodified	_GMYIFLHTV_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3084716796875	2	540.78097	1079.54739	-0.49303	-0.00026662	1.4377	0.0007775	0.9447	0.00051088	540.7816268967233	72.713	1.092	72.437	72.197	73.288	-0.2769					59	25	3	0	0	0	0.024436	1	8534	8534		38.806	5.2906	1	1319100			20519	8236	14180	14211	23465	23465					0.010795885765219282
GMYIFLHTV	9	Unmodified	_GMYIFLHTV_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3080444335938	2	540.78097	1079.54739	-1.3475	-0.00072871	1.9895	0.0010759	0.64196	0.00034716	540.7820515837711	72.542	1.0382	72.344	72.077	73.115	-0.19811					58	24	3	0	0	0	0.023775	1	8493	8493		68.485	26.01	1	2837700			20520	8236	14180	14211	23466	23466					0.010795885765219282
GMYVFLHAV	9	Unmodified	_GMYVFLHAV_					0	0	0		ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7672119140625	2	518.767863	1035.52117	0.26948	0.0001398	0.23744	0.00012318	0.50693	0.00026298	518.7677376457322	70.412	0.54602	70.412	70.241	70.787	0					29	12	3	0	0	0	0.22343	2	8512	8512;8524		85.909	47.103	1	923890			20521	4309	14181	14212	23467;23468	23467					0.004833194050661405
GMYVFLHAV	9	Unmodified	_GMYVFLHAV_					0	0	0		ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7689208984375	2	518.767863	1035.52117	0.76999	0.00039944	-0.48535	-0.00025178	0.28464	0.00014766	518.7672131765348	70.773	0.58665	70.48	70.292	70.879	-0.29291					27	13	3	0	0	0	0.22343	2	8522	8522;8536		85.909	45.131	1	755750			20522	4309	14181	14212	23469;23470	23469					0.004833194050661405
GMYVFLHAV	9	Unmodified	_GMYVFLHAV_					0	0	0		ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7673950195312	2	518.767863	1035.52117	-0.46728	-0.00024241	0.77594	0.00040253	0.30866	0.00016012	518.7680099070516	70.532	0.55152	70.544	70.347	70.898	0.012413					30	12	3	0	0	0	0.22343	2	8446	8446;8459		85.909	39.143	1	1156300			20523	4309	14181	14212	23471;23472	23471					0.004833194050661405
GMYVFLHAV	9	Oxidation (M)	_GM(Oxidation (M))YVFLHAV_		GM(1)YVFLHAV		GM(100)YVFLHAV	0	0	1		ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.268798828125	2	526.76532	1051.51609	-0.96947	-0.00051068	1.0643	0.00056062	0.094789	4.9932E-05	526.764824749894	62.156	0.64809	62.219	61.876	62.524	0.062767					26	17	2	0	0	0	0.14584	2	7133	7133;7144		100.36	50.919	1	1011200			20524	4309	14181	14213	23473;23474	23473		170			-0.007609844575426905
GNAMLTRV	8	Unmodified	_GNAMLTRV_					0	0	0			REV__ENSG00000143458|ENST00000368918|GABPB2	REV__ENSG00000143458|ENST00000368918|GABPB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.7245788574219	2	431.234187	860.453822	1.3393	0.00057754	1.2147	0.00052381	2.554	0.0011014	431.2365888014937	36.124	0.1777	35.926	35.876	36.054	-0.19829					6	4	2	0	0	0	0.027866	1	2784	2784		42.396	13.247	1	42095	+		20525	24251	14182	14214	23475	23475					0.018012891941111775
GNAVTPPQERR	11	Unmodified	_GNAVTPPQERR_					0	0	0		ENST00000443945.6_1_13:47127388-47127583:+|nuORF	ENST00000443945.6_1_13:47127388-47127583:+|nuORF	ENST00000443945.6_1_13:47127388-47127583:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.182861328125	3	408.886304	1223.63708	0.23123	9.4549E-05	-2.8614	-0.00117	-2.6302	-0.0010755	408.8849654775046	24.177	2.2141	24.002	23.323	25.537	-0.17484					119	51	5	0	0	0	0.024811	1	1155	1155		58.63	18.756	1	791140			20526	14409	14183	14215	23476	23476					0.034209345094723176
GNAVVCKGR	9	Unmodified	_GNAVVCKGR_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.7776794433594	2	452.245086	902.47562	0.48386	0.00021883	1.3648	0.00061721	1.8486	0.00083603	452.245660112601	40.738	0.7042	40.738	40.381	41.085	0					30	19	2	0	0	0	0.024405	1	3663	3663		20.947	2.6225	1	360980			20527	5456	14184	14216	23477	23477					0.02048093942687501
GNAVVCKGR	9	Unmodified	_GNAVVCKGR_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	452.245086	902.47562	-0.16569	-7.4931E-05	-4.6088	-0.0020843	-4.7745	-0.0021592	452.2429396338348	40.927	0.53775	40.791	40.561	41.099	-0.13553	-0.084035	-0.00014507	NaN	14.865	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251200			20528	5456	14184	14216							0.02048093942687501
GNAVVCKGR	9	Unmodified	_GNAVVCKGR_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	452.245086	902.47562	-0.2472	-0.0001118	-4.8237	-0.0021815	-5.0709	-0.0022933	452.24297077687436	41.142	0.70531	40.914	40.729	41.434	-0.2278	0.039094	-0.00033945	NaN	14.865	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243510			20529	5456	14184	14216							0.02048093942687501
GNAVVCKGR	9	Unmodified	_GNAVVCKGR_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	452.245086	902.47562	-0.78626	-0.00035558	-4.5718	-0.0020676	-5.3581	-0.0024232	452.2430451335981	41.174	0.77547	40.944	40.733	41.508	-0.23029	0.068355	-0.00011159	NaN	14.865	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246100			20530	5456	14184	14216							0.02048093942687501
GNCALRPL	8	Unmodified	_GNCALRPL_					0	0	0			REV__ENST00000547852.1_1_12:50560026-50561080:-|nuORF	REV__ENST00000547852.1_1_12:50560026-50561080:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.2226867675781	2	422.228905	842.443257	-1.4172	-0.00059838	2.2761	0.00096101	0.85887	0.00036264	422.2291717010184	29.428	0.39129	29.428	29.26	29.652	0					18	9	3	0	0	0	0.027866	1	1802	1802		25.45	1.2474	1	93601	+		20531	34871	14185	14217	23478	23478					0.015733065396602797
GNCALRPL	8	Unmodified	_GNCALRPL_					0	0	0			REV__ENST00000547852.1_1_12:50560026-50561080:-|nuORF	REV__ENST00000547852.1_1_12:50560026-50561080:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	422.228905	842.443257	-0.70196	-0.00029639	1.012	0.0004273	0.31005	0.00013091	422.22924463554523	29.592	0.72844	29.346	28.796	29.524	-0.24524	-0.013084	0.00037025	NaN	25.45	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128280	+		20532	34871	14185	14217							0.015733065396602797
GNCALRPL	8	Unmodified	_GNCALRPL_					0	0	0			REV__ENST00000547852.1_1_12:50560026-50561080:-|nuORF	REV__ENST00000547852.1_1_12:50560026-50561080:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.228905	842.443257	-0.48168	-0.00020338	0.28605	0.00012078	-0.19562	-8.2598E-05	422.2287852408702	29.477	0.50885	29.305	28.981	29.49	-0.17258	-0.054787	-0.00024279	NaN	25.45	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145620	+		20533	34871	14185	14217							0.015733065396602797
GNDEEAPFLL	10	Unmodified	_GNDEEAPFLL_					0	0	0			REV__ENST00000600274.5_1_19:42396347-42410935:+|nuORF	REV__ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.7640991210938	2	552.764029	1103.5135	3.3931	0.0018756	-3.0229	-0.0016709	0.37026	0.00020467	552.7623028017557	16.823	0.24829	16.823	16.698	16.946	0					18	7	3	0	0	0	1.089	1	96	96		34.173	2.6427	1	72471	+		20534	20575	14186	14218	23479	23479					-0.03411161381518468
GNDKILLD	8	Unmodified	_GNDKILLD_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.244873046875	2	444.245275	886.475997	0.49711	0.00022084	-0.2112	-9.3827E-05	0.2859	0.00012701	444.2453203047101	103.02	1.0446	102.85	102.55	103.59	-0.17034					50	25	5	0	0	0	0.95679	1	12822	12822		44.117	8.4985	1	10788000	+		20535	25587	14187	14219	23480	23480					0.028217921435384596
GNEDCIGCLGY	11	Unmodified	_GNEDCIGCLGY_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.2260131835938	2	572.225899	1142.43724	0.30542	0.00017477	0.061901	3.5421E-05	0.36732	0.00021019	572.225795273453	50.665	0.70656	50.554	50.267	50.973	-0.11163					36	18	3	0	0	0	0.44817	1	5174	5174		79.713	13.283	1	1689100	+		20536	21876	14188	14220	23481	23481					-0.12827624544820537
GNEDCIGCLGY	11	Unmodified	_GNEDCIGCLGY_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2265014648438	2	572.225899	1142.43724	0.31591	0.00018077	0.15822	9.0537E-05	0.47413	0.00027131	572.2257479252539	50.921	0.70752	50.644	50.37	51.078	-0.27643					40	18	3	0	0	0	0.75995	1	5191	5191		60.118	12.461	1	1941500	+		20537	21876	14188	14220	23482	23482					-0.12827624544820537
GNEDCIGCLGY	11	Unmodified	_GNEDCIGCLGY_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2261352539062	2	572.225899	1142.43724	0.33839	0.00019364	-0.14796	-8.4666E-05	0.19043	0.00010897	572.2256289246753	50.737	0.66702	50.557	50.317	50.984	-0.18071					37	17	3	0	0	0	0.1766	2	5167	5167;5177		101.6	30.305	1	2073500	+		20538	21876	14188	14220	23483;23484	23483					-0.12827624544820537
GNEDCIGCLGY	11	Unmodified	_GNEDCIGCLGY_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	572.225899	1142.43724	0.30542	0.00017477	0.061901	3.5421E-05	0.36732	0.00021019	572.225795273453	50.665	0.70656	50.554	50.267	50.973	-0.11163	-0.031014	1.4665E-05	NaN	101.6	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1689100	+		20539	21876	14188	14220							-0.12827624544820537
GNEDCIGCLGY	11	Unmodified	_GNEDCIGCLGY_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	572.225899	1142.43724	0.33839	0.00019364	-0.14796	-8.4666E-05	0.19043	0.00010897	572.2256289246753	50.737	0.66702	50.557	50.317	50.984	-0.18071	-0.028264	-0.00022551	NaN	101.6	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2073500	+		20540	21876	14188	14220							-0.12827624544820537
GNESALWECQH	11	Unmodified	_GNESALWECQH_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	637.2684936523438	2	637.266944	1272.51934	-1.2613	-0.00080379	3.5594	0.0022683	2.2981	0.0014645	637.2694087819684	34.758	1.229	34.542	34.267	35.496	-0.21555					90	30	5	0	0	0	0.94885	3	2602	2569;2602;2615		46.457	21.938	1	7197200			20541	8761	14189	14221	23485;23486;23487	23486					-0.10602386141499665
GNESALWECQH	11	Unmodified	_GNESALWECQH_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	637.2688598632812	2	637.266944	1272.51934	-0.81878	-0.00052178	3.175	0.0020233	2.3562	0.0015016	637.2690837353263	34.68	1.0236	34.494	34.158	35.182	-0.18524					70	25	4	0	0	0	0.78452	1	2548	2548		49.536	21.455	1	6509800			20542	8761	14189	14221	23488	23488					-0.10602386141499665
GNESAVPLGGT	11	Unmodified	_GNESAVPLGGT_					0	0	0			REV__SLC41A3|p.D37N|1|0.21|ENSG00000114544|chr3:126068111-126068111|C/T|missense_variant	REV__SLC41A3|p.D37N|1|0.21|ENSG00000114544|chr3:126068111-126068111|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2489318847656	2	501.248546	1000.48254	0.15459	7.7489E-05	0.015416	7.7272E-06	0.17001	8.5216E-05	501.2484261595374	105.37	0.87786	105.2	104.94	105.81	-0.16484					56	31	2	0	0	0	1.013	1	13108	13108		33.922	1.1092	1	974540	+		20543	37505	14190	14222	23489	23489					-0.01768314695743811
GNGDQYFEL	9	Unmodified	_GNGDQYFEL_					0	0	0			REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3247680664062	2	521.727446	1041.44034	-0.34845	-0.0001818	3.6158	0.0018864	3.2673	0.0017046	521.7292465658879	50.289	2.1561	50.37	49.249	51.405	0.080994					89	60	2	0	0	0	0.024021	1	5057	5057		68.787	24.67	1	427490	+		20544	21367	14191	14223	23490	23490					-0.07872290104137392
GNGIHHGAKHG	11	Unmodified	_GNGIHHGAKHG_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENSG00000135272|ENST00000393486|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.80908203125	2	542.773388	1083.53222	-0.81842	-0.00044421	-3.6524	-0.0019824	-4.4708	-0.0024266	542.7709925845429	52.087	0.49831	51.94	51.711	52.209	-0.14735					32	13	3	0	0	0	0.024727	1	5571	5571		12.812	0.60486	1	1510900			20545	18295	14192	14224	23491	23491					-0.0062014217644446035
GNGKKKGF	8	Unmodified	_GNGKKKGF_					0	0	0		ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	417.9211120605469	2	418.24287	834.471186	-0.66459	-0.00027796	0.73453	0.00030721	0.069945	2.9254E-05	418.2431518377831	45.999	0.41576	45.848	45.647	46.062	-0.15157					16	11	2	0	0	0	0.027866	1	4481	4481		12.207	4.5166	1	216450			20546	14070	14193	14225	23492	23492					0.047329527914257596
GNGKVPIR	8	Unmodified	_GNGKVPIR_					0	0	0		ENST00000482587.5_3_1:179833021-179833192:-|nuORF	ENST00000482587.5_3_1:179833021-179833192:-|nuORF	ENST00000482587.5_3_1:179833021-179833192:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.2406311035156	2	420.756144	839.497735	0.033773	1.421E-05	0.84242	0.00035445	0.87619	0.00036866	420.7546702150586	37.364	0.43093	37.155	36.923	37.354	-0.2092					14	10	2	0	0	0	0.027866	1	2979	2979		7.1934	0	1	34895			20547	15262	14194	14226	23493	23493					0.07156641682740883
GNGLSFGYILY	11	Unmodified	_GNGLSFGYILY_					0	0	0		GLB1L2|p.Q426L|1|0.19|ENSG00000149328|chr11:134371069-134371069|A/T|missense_variant	GLB1L2|p.Q426L|1|0.19|ENSG00000149328|chr11:134371069-134371069|A/T|missense_variant	GLB1L2|p.Q426L|1|0.19|ENSG00000149328|chr11:134371069-134371069|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	601.8323364257812	2	602.305864	1202.59717	-0.26746	-0.00016109	-2.6481	-0.0015949	-2.9155	-0.001756	602.3043615778791	72.434	0.6365	72.17	72.001	72.638	-0.26479					19	14	2	0	0	0	0.024723	1	8529	8529		25.574	12.12	1	94872			20548	17680	14195	14227	23494	23494					0.00397994786203526
GNGNYKVGWV	10	Unmodified	_GNGNYKVGWV_					0	0	0			REV__ENSG00000140395|ENST00000267973|SKIC8	REV__ENSG00000140395|ENST00000267973|SKIC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.8025512695312	2	547.274898	1092.53524	-0.7656	-0.000419	3.6097	0.0019755	2.8441	0.0015565	547.2767365410211	30.556	1.3329	30.377	29.697	31.03	-0.17818					50	31	3	0	0	0	0.03519	1	1985	1985		31.53	0	1	420500	+		20549	24012	14196	14228	23495	23495					-0.007323118422846164
GNIMVVLVV	9	Unmodified	_GNIMVVLVV_					0	0	0		ENSG00000174417|ENST00000518632|TRHR	ENSG00000174417|ENST00000518632|TRHR	ENSG00000174417|ENST00000518632|TRHR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2874755859375	2	472.285889	942.557224	-0.32971	-0.00015572	3.8668	0.0018262	3.537	0.0016705	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.92825	2	11768	11768;11806		30.504	5.0535	1	42351000			20550	8464	14197	14229	23496;23497	23496					0.08364776581913702
GNKEEYGAKCM	11	Unmodified	_GNKEEYGAKCM_					0	0	0			REV__nc|ENSG00000145242|P54756-3|EPHA5	REV__nc|ENSG00000145242|P54756-3|EPHA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.5247802734375	3	410.514491	1228.52164	0.41287	0.00016949	-3.6931	-0.0015161	-3.2802	-0.0013466	410.5129845768755	55.055	0.14525	54.849	54.758	54.904	-0.20613					5	3	2	0	0	0	0.024809	1	5874	5874		22.562	12.915	1	57961	+		20551	24391	14198	14230	23498	23498					-0.08347673728053451
GNKFLQFDP	9	Unmodified	_GNKFLQFDP_					0	0	0			REV__ENSG00000121410|ENST00000263100|A1BG	REV__ENSG00000121410|ENST00000263100|A1BG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2709350585938	2	533.271824	1064.5291	-0.67975	-0.00036249	3.3789	0.0018019	2.6992	0.0014394	533.7749763810876	60.006	0.82356	59.805	59.5	60.323	-0.20016					35	21	2	0	0	0	0.024541	1	6809	6809		19.997	3.5236	1	686130	+		20552	22594	14199	14231	23499	23499					-0.0005883007381726202
GNLGRNGKP	9	Unmodified	_GNLGRNGKP_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7532043457031	2	456.754133	911.493713	0.055479	2.534E-05	0.23913	0.00010922	0.29461	0.00013456	456.75415311356403	22.693	1.1494	22.693	22.291	23.441	0					55	25	4	0	0	0	0.85329	1	817	817		35.618	5.7767	1	808900	+		20553	28706	14200	14232	23500	23500					0.034425521890511845
GNLLFYSL	8	Unmodified	_GNLLFYSL_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2430114746094	2	463.752736	925.490919	0.078665	3.6481E-05	3.0641	0.001421	3.1428	0.0014575	463.75436754147296	67.779	1.6105	67.49	66.911	68.522	-0.28834					58	40	2	0	0	0	0.027866	1	8162	8162		45.952	16.802	1	242780	+		20554	20775;36023	14201	14233	23501	23501					0.025192840115323634
GNLQKDKP	8	Unmodified	_GNLQKDKP_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2408752441406	2	450.250892	898.48723	-0.60827	-0.00027388	-4.2222	-0.0019011	-4.8305	-0.0021749	450.2488025980428	23.864	0.21305	23.817	23.656	23.869	-0.047146					6	4	2	0	0	0	0.027866	1	965	965		29.15	0	1	24925			20555	8744	14202	14234	23502	23502					0.03392614237657199
GNLYLVSET	9	Unmodified	_GNLYLVSET_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6;REV__nc|ENSG00000091262|O95255-3|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.285888671875	2	498.25584	994.497126	-0.20035	-9.9827E-05	3.1976	0.0015932	2.9973	0.0014934	498.25730704212276	17.297	0.25223	17.09	16.963	17.216	-0.20669					8	4	2	0	0	0	0.024541	1	168	168		23.042	7.4007	1	32882	+		20556	20906;36506	14203	14235	23503	23503					-0.0003424254761057455
GNLYLVSET	9	Unmodified	_GNLYLVSET_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6;REV__nc|ENSG00000091262|O95255-3|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.25584	994.497126	1.2446	0.00062014	2.1453	0.0010689	3.3899	0.001689	498.25674045289117	17.327	0.30138	17.173	17.007	17.308	-0.15403	0.041223	-0.00056243	NaN	23.042	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44509	+		20557	20906;36506	14203	14235							-0.0003424254761057455
GNPKKRMCY	9	Unmodified	_GNPKKRMCY_					0	0	0		KCNA1|p.R71C|1|0.22|ENSG00000111262|chr12:4911589-4911589|C/T|missense_variant	KCNA1|p.R71C|1|0.22|ENSG00000111262|chr12:4911589-4911589|C/T|missense_variant	KCNA1|p.R71C|1|0.22|ENSG00000111262|chr12:4911589-4911589|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.3431396484375	2	548.773154	1095.53175	-0.63122	-0.0003464	-1.201	-0.00065909	-1.8323	-0.0010055	548.7720046603547	49.975	1.0036	50.056	49.81	50.814	0.08099					47	29	2	0	0	0	0.024487	1	5123	5123		31.955	1.4512	1	191590			20558	17783	14204	14236	23504	23504					-0.01219021212136795
GNPLSRNVLRL	11	Unmodified	_GNPLSRNVLRL_					0	0	0		ENST00000492204.1_1_10:103552448-103553834:-|nuORF	ENST00000492204.1_1_10:103552448-103553834:-|nuORF	ENST00000492204.1_1_10:103552448-103553834:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.869140625	2	619.870028	1237.7255	0.12405	7.6895E-05	-1.3693	-0.00084877	-1.2452	-0.00077188	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0344	1	11410	11410		29.17	0	1	1596200			20559	15476	14205	14237	23505	23505					0.11614974819917734
GNPRLALQR	9	Unmodified	_GNPRLALQR_					0	0	0		ENST00000381153.7_1_11:2320857-2321786:-|nuORF	ENST00000381153.7_1_11:2320857-2321786:-|nuORF	ENST00000381153.7_1_11:2320857-2321786:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7994384765625	2	512.804157	1023.59376	-0.108	-5.5385E-05	-4.2219	-0.002165	-4.3299	-0.0022204	512.8017845194574	19.199	0.69052	19.08	18.756	19.446	-0.11872					18	13	2	0	0	0	0.024405	1	409	409		35.618	5.1146	1	37109			20560	13331	14206	14238	23506	23506					0.08290789522845898
GNQIKSIT	8	Unmodified	_GNQIKSIT_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.22674560546875	2	430.745442	859.476331	-0.029166	-1.2563E-05	0.25138	0.00010828	0.22222	9.5719E-05	430.74539386570797	45.308	0.44551	45.097	44.871	45.316	-0.21109					22	12	2	0	0	0	0.027866	1	4273	4273		33.516	16.151	1	438030			20561	10205	14207	14239	23507	23507					0.04097211863370376
GNQQPHGN	8	Unmodified	_GNQQPHGN_					0	0	0			REV__ENSG00000118007|ENST00000383202|STAG1	REV__ENSG00000118007|ENST00000383202|STAG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.24603271484375	2	426.191365	850.368178	-0.041178	-1.755E-05	0.18789	8.0076E-05	0.14671	6.2526E-05	426.19138631777867	89.424	0.55053	89.296	89.079	89.63	-0.12774					16	12	2	0	0	0	0.027866	1	10949	10949		21.96	0	1	72480	+		20562	22382	14208	14240	23508	23508					-0.06299159667184995
GNRNLGSL	8	Unmodified	_GNRNLGSL_					0	0	0		ENST00000472301.5_1_3:49043105-49044337:+|nuORF;ENST00000484115.5_1_3:49043105-49043375:+|nuORF	ENST00000472301.5_1_3:49043105-49044337:+|nuORF	ENST00000472301.5_1_3:49043105-49044337:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.7283935546875	2	415.727584	829.440614	4.4908	0.0018669	-2.3453	-0.00097499	2.1455	0.00089195	415.7264988862128	17.696	0.59088	17.446	17.276	17.867	-0.25049					18	11	3	0	0	0	0.97924	1	187	187		40.573	6.4001	1	162110			20563	14987	14209	14241	23509	23509					0.019071744063694496
GNRNLGSL	8	Unmodified	_GNRNLGSL_					0	0	0		ENST00000472301.5_1_3:49043105-49044337:+|nuORF;ENST00000484115.5_1_3:49043105-49043375:+|nuORF	ENST00000472301.5_1_3:49043105-49044337:+|nuORF	ENST00000472301.5_1_3:49043105-49044337:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	415.727584	829.440614	1.0572	0.00043952	0.96427	0.00040087	2.0215	0.00084039	415.727849065177	17.637	0.44923	17.483	17.308	17.758	-0.15403	0.026921	0.00086795	NaN	40.573	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125600			20564	14987	14209	14241							0.019071744063694496
GNTKPGANAM	10	Unmodified	_GNTKPGANAM_					0	0	0			REV__ENST00000420099.1_1_13:91924337-91924628:-|nuORF	REV__ENST00000420099.1_1_13:91924337-91924628:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7310485839844	2	480.732009	959.449465	-0.17875	-8.5931E-05	0.17378	8.3541E-05	-0.0049713	-2.3899E-06	480.7320929835196	31.552	4.2201	31.564	28.598	32.818	0.011797					200	104	3	0	0	0	1.0002	1	2139	2139		45.972	1.8554	1	6976400	+		20565	32155	14210	14242	23510	23510					-0.03188220019455912
GNTQVSRKKL	10	Unmodified	_GNTQVSRKKL_					0	0	0		nc|ENSG00000143363|Q86TP1-2|PRUNE1;ENSG00000143363|ENST00000271620|PRUNE1;nc|ENSG00000143363|Q86TP1-6|PRUNE1;nc|ENSG00000143363|Q86TP1-5|PRUNE1;nc|ENSG00000143363|Q86TP1-7|PRUNE1;nc|ENSG00000143363|Q86TP1-4|PRUNE1;nc|ENSG00000143363|Q86TP1-3|PRUNE1	nc|ENSG00000143363|Q86TP1-2|PRUNE1	nc|ENSG00000143363|Q86TP1-2|PRUNE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8357543945312	2	565.835654	1129.65676	-0.75944	-0.00042972	0.2639	0.00014932	-0.49554	-0.0002804	565.8358382043282	21.889	0.86915	21.687	21.276	22.145	-0.20218					49	17	5	0	0	0	1.0236	1	714	714		42.864	0.46813	1	1710200			20566	5637	14211	14243	23511	23511					0.0971131052021974
GNVRLVKTT	9	Unmodified	_GNVRLVKTT_					0	0	0			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3009338378906	2	494.300916	986.587279	0.096981	4.7938E-05	-0.41903	-0.00020712	-0.32204	-0.00015919	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.87448	1	11983	11983		34.173	5.023	1	34796000	+		20567	28596	14212	14244	23512	23512					0.09344851571461277
GNVVRLRL	8	Unmodified	_GNVVRLRL_					0	0	0		ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.800048828125	2	463.798343	925.582134	0.80673	0.00037416	2.5007	0.0011598	3.3074	0.001534	463.7993651467069	103.04	1.7183	103.04	102.79	104.51	-0.0046005					75	41	3	0	0	0	1.0574	1	13159	13159		26.796	0	1	829060			20568	6855	14213	14245	23513	23513					0.11636592499519338
GNWFLTPAAL	10	Unmodified	_GNWFLTPAAL_					0	0	0			REV__ENST00000563197.5_2_16:30007047-30007152:+|nuORF	REV__ENST00000563197.5_2_16:30007047-30007152:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3120727539062	2	545.290017	1088.56548	-0.97214	-0.0005301	0.32326	0.00017627	-0.64888	-0.00035383	545.2899487585919	22.792	0.69457	22.717	22.317	23.011	-0.075296					24	14	2	0	0	0	0.03519	1	785	785		32.812	0	1	49660	+		20569	35216	14214	14246	23514	23514					0.024740468228856116
GNYSIDLVKL	10	Unmodified	_GNYSIDLVKL_					0	0	0			REV__ENSG00000187905|ENST00000442047|LRRC74B	REV__ENSG00000187905|ENST00000442047|LRRC74B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.3139038085938	2	561.313689	1120.61282	-0.99104	-0.00055628	1.323	0.00074264	0.332	0.00018635	561.3142812658557	44.772	0.61769	44.561	44.292	44.91	-0.21109					43	15	4	0	0	0	1.118	1	4194	4194		30.318	1.1477	1	1436300	+		20570	27991	14215	14247	23515	23515					0.05734281303261923
GPAGLPGIGAV	11	Unmodified	_GPAGLPGIGAV_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;NOTCH1-CARD9|1|fusion	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.74566650390625	2	454.763635	907.512717	0.14236	6.4739E-05	-1.518	-0.00069034	-1.3757	-0.0006256	454.7629025240842	54.196	0.54826	54.196	53.976	54.524	0					18	15	2	0	0	0	0.024791	1	5903	5903		31.955	0	1	160920			20571	18824	14216	14248	23516	23516					0.05526088760097991
GPAGRPPR	8	Unmodified	_GPAGRPPR_					0	0	0			REV__ENST00000457594.2_7:74237150-74267816:-|nuORF	REV__ENST00000457594.2_7:74237150-74267816:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.23284912109375	2	404.232836	806.45112	1.1468	0.00046357	-1.3905	-0.00056207	-0.24367	-9.8499E-05	404.23205253167436	84.32	2.7374	84.32	83.562	86.3	0					145	64	4	0	0	0	1.0574	1	10600	10600		20.482	4.8456	1	14422000	+		20572	32811	14217	14249	23517	23517					0.04015201851461825
GPAKLEADIF	10	Unmodified	_GPAKLEADIF_					0	0	0			REV__ENSG00000141506|ENST00000447110|PIK3R5	REV__ENSG00000141506|ENST00000447110|PIK3R5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7965087890625	2	530.787307	1059.56006	-0.68603	-0.00036414	-2.013	-0.0010685	-2.699	-0.0014326	530.7864700110428	21.828	0.47949	21.637	21.468	21.947	-0.19072					18	9	3	0	0	0	0.03519	1	719	719		30.318	0	1	44052	+		20573	24098	14218	14250	23518	23518					0.03266323240404745
GPAPAPHSL	9	Unmodified	_GPAPAPHSL_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.7271423339844	2	423.727052	845.439552	-0.67813	-0.00028734	0.56193	0.0002381	-0.11621	-4.924E-05	423.72731732705205	34.497	1.8701	34.497	34.09	35.96	0					100	48	3	0	0	0	0.026982	6	2561	2550;2561;2573;2585;2597;2610		143.97	38.706	1	22721000			20574	18765	14219	14251	23519;23520;23521;23522;23523;23524	23520					0.010649600374676993
GPAPAPHSL	9	Unmodified	_GPAPAPHSL_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.7272644042969	2	423.727052	845.439552	-0.20402	-8.6449E-05	0.050639	2.1457E-05	-0.15338	-6.4992E-05	423.72709141150557	34.318	1.8566	34.313	33.869	35.726	-0.0045624					133	47	5	0	0	0	0.0146	6	2545	2511;2522;2533;2545;2557;2570		163.84	49.258	1	22571000			20575	18765	14219	14251	23525;23526;23527;23528;23529;23530	23528					0.010649600374676993
GPAPAPHSL	9	Unmodified	_GPAPAPHSL_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.72723388671875	2	423.727052	845.439552	-0.59605	-0.00025256	0.56546	0.0002396	-0.03059	-1.2962E-05	423.727314350917	34.299	1.697	34.35	33.844	35.541	0.050255					133	43	5	0	0	0	0.016588	5	2482	2471;2482;2494;2506;2518		153.88	38.706	1	22952000			20576	18765	14219	14251	23531;23532;23533;23534;23535	23532					0.010649600374676993
GPAPLAPQN	9	Unmodified	_GPAPLAPQN_					0	0	0			REV__ENSG00000005339|ENST00000262367|CREBBP	REV__ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2568359375	2	432.732335	863.450116	0.63	0.00027262	-2.1639	-0.00093639	-1.5339	-0.00066377	432.7315225501226	97.36	0.71158	97.369	96.971	97.683	0.0089111					25	15	2	0	0	0	0.024466	1	12427	12427		12.207	0	1	60468	+		20577	19803	14220	14252	23536	23536					0.012929426918958598
GPAPRRTA	8	Unmodified	_GPAPRRTA_					0	0	0		CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant;ENSG00000157782|ENST00000316803|CABP1	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.23797607421875	2	413.238119	824.461684	0.43789	0.00018095	0.23994	9.9153E-05	0.67783	0.00028011	413.2381098357524	89.719	1.6173	89.719	89.102	90.719	0					72	38	4	0	0	0	1.0338	2	11332	11319;11332		31.955	5.1588	1	1834600			20578	201	14221	14253	23537;23538	23538					0.04243184505901354
GPAPRRTA	8	Unmodified	_GPAPRRTA_					0	0	0		CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant;ENSG00000157782|ENST00000316803|CABP1	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.23779296875	2	413.238119	824.461684	0.70486	0.00029127	0.024221	1.0009E-05	0.72908	0.00030128	413.23803468706404	89.794	1.1563	89.772	89.409	90.566	-0.021645					67	27	4	0	0	0	1.0574	1	11302	11302		26.796	1.3459	1	1921700			20579	201	14221	14253	23539	23539					0.04243184505901354
GPAPRRTA	8	Unmodified	_GPAPRRTA_					0	0	0		CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant;ENSG00000157782|ENST00000316803|CABP1	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.2377624511719	2	413.238119	824.461684	0.37943	0.00015679	0.17917	7.4042E-05	0.5586	0.00023084	413.2380803151311	89.748	1.1119	89.762	89.297	90.409	0.013443					62	26	4	0	0	0	1.0338	1	11274	11274		31.955	4.0726	1	1651200			20580	201	14221	14253	23540	23540					0.04243184505901354
GPAPRRTA	8	Unmodified	_GPAPRRTA_					0	0	0		CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant;ENSG00000157782|ENST00000316803|CABP1	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.23760986328125	2	413.238119	824.461684	-0.49111	-0.00020295	1.2389	0.00051195	0.74776	0.000309	413.2385346560077	89.906	0.95889	89.778	89.37	90.329	-0.12775					56	22	4	0	0	0	1.0574	1	10990	10990		26.796	5.0938	1	1257600			20581	201	14221	14253	23541	23541					0.04243184505901354
GPAPTARR	8	Unmodified	_GPAPTARR_					0	0	0		ENST00000252674.8_2_19:6211645-6212743:-|nuORF	ENST00000252674.8_2_19:6211645-6212743:-|nuORF	ENST00000252674.8_2_19:6211645-6212743:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.2375793457031	2	413.238119	824.461684	0.43789	0.00018095	0.23994	9.9153E-05	0.67783	0.00028011	413.2381098357524	89.719	1.6173	89.719	89.102	90.719	0					72	38	4	0	0	0	1.0574	1	11310	11310		26.796	0	1	1834600			20582	11359	14222	14254	23542	23542					0.04243184505901354
GPAQTLPVRL	10	Unmodified	_GPAQTLPVRL_					0	0	0			REV__ENST00000565054.5_1_16:81772902-81819632:+|nuORF	REV__ENST00000565054.5_1_16:81772902-81819632:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3118896484375	2	526.316566	1050.61858	0.64936	0.00034177	-0.96652	-0.00050869	-0.31716	-0.00016693	526.3160453633758	37.147	0.418	37.147	36.887	37.305	0					14	10	2	0	0	0	0.03519	1	2984	2984		35.152	2.3396	1	100680	+		20583	35265	14223	14255	23543	23543					0.09529424605557324
GPARPRLACV	10	Unmodified	_GPARPRLACV_					0	0	0			REV__ENST00000333896.5_1_2:54785531-54785597:+|nuORF	REV__ENST00000333896.5_1_2:54785531-54785597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2644653320312	2	520.295111	1038.57567	-0.73232	-0.00038102	-4.116	-0.0021415	-4.8483	-0.0025225	520.2928829384649	57.209	0.32162	57.042	56.858	57.18	-0.1672					14	8	2	0	0	0	0.03519	1	6254	6254		24.203	1.1603	1	147270	+		20584	30508	14224	14256	23544	23544					0.05792331276461482
GPARPRLACV	10	Unmodified	_GPARPRLACV_					0	0	0			REV__ENST00000333896.5_1_2:54785531-54785597:+|nuORF	REV__ENST00000333896.5_1_2:54785531-54785597:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.295111	1038.57567	-0.59651	-0.00031036	-9.015	-0.0046905	-9.6115	-0.0050008	520.2913859624	57.419	0.19301	57.419	57.266	57.459	0	0.18873	-0.0039679	NaN	24.203	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40400	+		20585	30508	14224	14256							0.05792331276461482
GPARRLPS	8	Unmodified	_GPARRLPS_					0	0	0		ENST00000258436.9_1_2:103335495-103335570:-|nuORF	ENST00000258436.9_1_2:103335495-103335570:-|nuORF	ENST00000258436.9_1_2:103335495-103335570:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.22540283203125	2	427.253769	852.492984	0.53149	0.00022708	0.25537	0.00010911	0.78686	0.00033619	427.2537063179842	25.02	1.1994	25.099	24.549	25.748	0.079491					46	27	3	0	0	0	0.027866	1	1165	1165		23.042	10.083	1	217590			20586	11422	14225	14257	23545	23545					0.0608375753998871
GPARRLPS	8	Unmodified	_GPARRLPS_					0	0	0		ENST00000258436.9_1_2:103335495-103335570:-|nuORF	ENST00000258436.9_1_2:103335495-103335570:-|nuORF	ENST00000258436.9_1_2:103335495-103335570:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	427.253769	852.492984	-0.87164	-0.00037241	3.1894	0.0013627	2.3177	0.00099025	427.25429658296025	25.063	1.0595	25.063	24.385	25.445	0	-0.029148	0.0019282	NaN	23.042	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171770			20587	11422	14225	14257							0.0608375753998871
GPARRLPS	8	Unmodified	_GPARRLPS_					0	0	0		ENST00000258436.9_1_2:103335495-103335570:-|nuORF	ENST00000258436.9_1_2:103335495-103335570:-|nuORF	ENST00000258436.9_1_2:103335495-103335570:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	427.253769	852.492984	-1.0723	-0.00045814	3.055	0.0013052	1.9827	0.00084711	427.25438885947244	25.149	0.9283	25.114	24.546	25.474	-0.034395	0.022224	0.0018134	NaN	23.042	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178330			20588	11422	14225	14257							0.0608375753998871
GPATLLALCV	10	Unmodified	_GPATLLALCV_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27734375	2	479.275521	956.536489	0.97614	0.00046784	3.0162	0.0014456	3.9924	0.0019134	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	1.0541	4	10093	10093;10153;10289;10325		38.806	8.3025	1	7774800			20589	2689	14226	14258	23546;23547;23548;23549	23546					0.05648186202233774
GPATLLALCV	10	Unmodified	_GPATLLALCV_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2772521972656	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	1.1166	1	10308	10308		30.504	4.9296	1	7158600			20590	2689	14226	14258	23550	23550					0.05648186202233774
GPATLLALCV	10	Unmodified	_GPATLLALCV_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MSMS	OPSCC_40_ClassI_Rep-2	5	479.27716064453125	2	479.275521	956.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.574	1	85.425	84.925	85.925	-0.14967								0	0	0	0.74254	1	10381	10381		38.806	8.3025	1				20591	2689	14226	14258	23551	23551					0.05648186202233774
GPATPRPF	8	Unmodified	_GPATPRPF_					0	0	0			REV__GRIK4|p.D470Mfs*20|1|0.47|ENSG00000149403|chr11:120905422-120905422|G/-|frameshift_variant	REV__GRIK4|p.D470Mfs*20|1|0.47|ENSG00000149403|chr11:120905422-120905422|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.23779296875	2	421.729595	841.444637	-0.70516	-0.00029739	-1.9228	-0.00081091	-2.628	-0.0011083	421.72993980698465	32.884	0.49558	32.884	32.679	33.174	0					16	12	2	0	0	0	0.027866	1	2291	2291		41.208	26.544	1	158930	+		20592	36084	14227	14259	23552	23552					0.01757263900083217
GPAVRLRPAF	10	Unmodified	_GPAVRLRPAF_					0	0	0		ENST00000328086.11_1_16:25268599-25269199:-|nuORF	ENST00000328086.11_1_16:25268599-25269199:-|nuORF	ENST00000328086.11_1_16:25268599-25269199:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3234252929688	2	542.324725	1082.6349	-0.28579	-0.00015499	-3.6006	-0.0019527	-3.8864	-0.0021077	542.322585034107	18.052	0.34339	17.92	17.712	18.056	-0.13148					14	6	3	0	0	0	1.1267	1	233	233		29.15	7.4472	1	74903			20593	12298	14228	14260	23553	23553					0.09688550562304954
GPAVRLRPAF	10	Unmodified	_GPAVRLRPAF_					0	0	0		ENST00000328086.11_1_16:25268599-25269199:-|nuORF	ENST00000328086.11_1_16:25268599-25269199:-|nuORF	ENST00000328086.11_1_16:25268599-25269199:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.324725	1082.6349	2.9115	0.001579	-6.8629	-0.0037219	-3.9515	-0.002143	542.3207309571393	17.872	0.43981	17.872	17.647	18.087	0	-0.02387	-0.0021066	NaN	29.15	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85657			20594	12298	14228	14260							0.09688550562304954
GPCERRLN	8	Unmodified	_GPCERRLN_					0	0	0		ENST00000312515.6_1_11:65686748-65686829:+|nuORF	ENST00000312515.6_1_11:65686748-65686829:+|nuORF	ENST00000312515.6_1_11:65686748-65686829:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.29498291015625	2	472.740168	943.465783	0.94113	0.00044491	0.20428	9.6571E-05	1.1454	0.00054148	472.74004583806146	58.259	0.73284	58.259	57.982	58.714	0					24	19	2	0	0	0	0.027866	1	6555	6555		38.806	22.333	1	137480			20595	12090	14229	14261	23554	23554					-0.008210940626895535
GPCERRLN	8	Unmodified	_GPCERRLN_					0	0	0		ENST00000312515.6_1_11:65686748-65686829:+|nuORF	ENST00000312515.6_1_11:65686748-65686829:+|nuORF	ENST00000312515.6_1_11:65686748-65686829:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.740168	943.465783	0.49384	0.00023346	1.9691	0.00093086	2.4629	0.0011643	472.74096634125584	58.241	0.69753	58.333	58.084	58.782	0.091217	0.036729	0.00033875	NaN	38.806	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195330			20596	12090	14229	14261							-0.008210940626895535
GPDGKEGRPG	10	Unmodified	_GPDGKEGRPG_					0	0	0			REV__ENSG00000133661|ENST00000372292|SFTPD	REV__ENSG00000133661|ENST00000372292|SFTPD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.283447265625	2	485.241055	968.467557	-0.81184	-0.00039394	-3.214	-0.0015595	-4.0258	-0.0019535	485.2400603156485	21.607	0.32887	21.607	21.491	21.819	0					8	6	2	0	0	0	0.03519	1	695	695		60.118	14.166	1	29579	+		20597	23385	14230	14262	23555	23555					-0.017937617730922284
GPDTKRAKL	9	Unmodified	_GPDTKRAKL_					0	0	0		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2931213378906	2	493.293091	984.571629	0.68821	0.00033949	-0.60209	-0.000297	0.086126	4.2485E-05	493.2926480996852	19.561	0.61265	19.561	19.317	19.929	0					36	12	4	0	0	0	0.53979	2	421	421;435		56.721	17.468	1	710390			20598	5548	14231	14263	23556;23557	23556					0.07872565054424285
GPDTKRAKL	9	Unmodified	_GPDTKRAKL_					0	0	0		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2931213378906	2	493.293091	984.571629	-0.2265	-0.00011173	0.34798	0.00017166	0.12148	5.9925E-05	493.2931315202299	19.796	0.6683	19.678	19.397	20.066	-0.11872					35	13	4	0	0	0	0.2508	1	436	436		82.241	20.133	1	630850			20599	5548	14231	14263	23558	23558					0.07872565054424285
GPDTKRAKL	9	Unmodified	_GPDTKRAKL_					0	0	0		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2985534667969	2	493.293091	984.571629	2.1023	0.001037	-1.9694	-0.00097151	0.13284	6.553E-05	493.2920008031753	19.693	0.67683	19.759	19.538	20.215	0.066195					37	13	4	0	0	0	0.42604	3	422	398;407;422		64.207	21.733	1	515460			20600	5548	14231	14263	23559;23560;23561	23561					0.07872565054424285
GPEDGRPSL	9	Unmodified	_GPEDGRPSL_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4;nc|ENSG00000131435|P50479-2|PDLIM4;ENST00000474421.1_1_5:131593409-131606787:+|nuORF	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.23040771484375	2	464.230156	926.445759	0.43975	0.00020414	-0.46481	-0.00021578	-0.025064	-1.1635E-05	464.2299242321955	37.382	0.77496	37.382	36.927	37.702	0					60	20	4	0	0	0	0.03201	4	3026	3026;3036;3048;3061		139.97	46.775	1	8496800			20601	4523	14232	14264	23562;23563;23564;23565	23562					-0.02040566521668552
GPEDGRPSL	9	Unmodified	_GPEDGRPSL_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4;nc|ENSG00000131435|P50479-2|PDLIM4;ENST00000474421.1_1_5:131593409-131606787:+|nuORF	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.230224609375	2	464.230156	926.445759	0.18935	8.79E-05	-0.19624	-9.11E-05	-0.0068925	-3.1997E-06	464.23004954029085	37.213	0.87991	37.149	36.709	37.589	-0.063385					67	23	4	0	0	0	0.025498	5	2995	2984;2995;3008;3020;3035		145.16	54.786	1	8015500			20602	4523	14232	14264	23566;23567;23568;23569;23570	23567					-0.02040566521668552
GPEDGRPSL	9	Unmodified	_GPEDGRPSL_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4;nc|ENSG00000131435|P50479-2|PDLIM4;ENST00000474421.1_1_5:131593409-131606787:+|nuORF	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.230224609375	2	464.230156	926.445759	0.65268	0.00030299	-0.4992	-0.00023174	0.15348	7.125E-05	464.2299706545932	37.312	1.2417	37.344	36.716	37.957	0.032269					81	32	4	0	0	0	0.025498	5	2974	2954;2962;2974;2988;3001		145.16	61.032	1	7107600			20603	4523	14232	14264	23571;23572;23573;23574;23575	23573					-0.02040566521668552
GPEKRTVQT	9	Unmodified	_GPEKRTVQT_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.28045654296875	2	508.28018	1014.54581	-1.2354	-0.00062795	0.33219	0.00016884	-0.90325	-0.0004591	508.28069525523404	20.828	1.1662	20.828	20.078	21.244	0					54	23	4	0	0	0	0.6504	1	585	585		49.442	0	1	195570	+		20604	26216	14233	14265	23576	23576					0.03911670812158263
GPEKRTVQT	9	Unmodified	_GPEKRTVQT_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2804870605469	2	508.28018	1014.54581	-0.52745	-0.00026809	-0.36905	-0.00018758	-0.8965	-0.00045567	508.28035234983815	21.021	1.0623	20.931	20.291	21.354	-0.090092					49	21	5	0	0	0	0.74711	1	599	599		42.864	0.46813	1	249500	+		20605	26216	14233	14265	23577	23577					0.03911670812158263
GPEKRTVQT	9	Unmodified	_GPEKRTVQT_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	508.28018	1014.54581	-1.2354	-0.00062795	0.33219	0.00016884	-0.90325	-0.0004591	508.28069525523404	20.828	1.1662	20.828	20.078	21.244	0	-0.051072	0.00030818	NaN	49.442	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195570	+		20606	26216	14233	14265							0.03911670812158263
GPELKQLRQQL	11	Unmodified	_GPELKQLRQQL_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2572021484375	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	1.0563	1	11992	11992		23.378	1.5975	1	1104700	+		20607	21127	14234	14266	23578	23578					0.10935824271541605
GPELLRRLN	9	Unmodified	_GPELLRRLN_					0	0	0			REV__ENST00000472924.1_1_3:160285772-160286174:+|nuORF	REV__ENST00000472924.1_1_3:160285772-160286174:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.3399658203125	2	534.31964	1066.62473	0.36567	0.00019538	1.6971	0.00090677	2.0627	0.0011022	534.3203562928312	97.812	0.69849	97.81	97.233	97.932	-0.0020752					20	15	2	0	0	0	0.024539	1	12425	12425		20.947	3.582	1	61337	+		20608	33222	14235	14267	23579	23579					0.0940794283710602
GPERVFPM	8	Unmodified	_GPERVFPM_					0	0	0		ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.738037109375	2	466.736563	931.458573	-0.48767	-0.00022762	2.8407	0.0013259	2.353	0.0010982	466.73784110464123	45.208	0.9959	45.059	44.763	45.759	-0.1488					63	28	4	0	0	0	0.89627	1	4385	4385		51.335	5.3632	1	9270800			20609	15112	14236	14268	23580	23580					-0.009898266631125807
GPGAPRINKV	10	Unmodified	_GPGAPRINKV_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.2806091308594	2	504.801083	1007.58761	0.26671	0.00013463	-0.34273	-0.00017301	-0.076022	-3.8376E-05	504.8007062893059	24.365	0.54823	24.444	24.275	24.823	0.078346					13	11	2	0	0	0	0.03519	1	1037	1037		53.351	17.733	1	23710	+		20610	25042	14237	14269	23581	23581					0.0841227129131994
GPGAPRINKV	10	Unmodified	_GPGAPRINKV_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.801083	1007.58761	-0.61555	-0.00031073	0.45573	0.00023005	-0.15982	-8.0678E-05	504.8009661630692	24.41	0.3103	24.41	24.253	24.563	0	-0.016584	0.00020656	NaN	35.618	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34779	+		20611	25042	14237	14269							0.0841227129131994
GPGAPRINKV	10	Unmodified	_GPGAPRINKV_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.801083	1007.58761	-1.2523	-0.00063217	1.7829	0.00090003	0.53061	0.00026785	504.80192377942353	24.474	0.35921	24.427	24.264	24.623	-0.047146	-0.00025194	0.0015465	NaN	35.618	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21508	+		20612	25042	14237	14269							0.0841227129131994
GPGDCHCSSH	10	Unmodified	_GPGDCHCSSH_					0	0	0			REV__ENST00000588221.5_1_19:9545477-9546142:-|nuORF	REV__ENST00000588221.5_1_19:9545477-9546142:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3135681152344	2	500.174001	998.333449	0.37021	0.00018517	3.1037	0.0015524	3.4739	0.0017375	500.1765234119779	76.141	0.19461	76.153	76.09	76.285	0.011642					6	4	2	0	0	0	0.03519	1	9317	9317		15.642	0	1	94956	+		20613	35647	14238	14270	23582	23582					-0.1657848686180614
GPGHSPELQL	10	Unmodified	_GPGHSPELQL_					0	0	0		ENST00000309100.7_1_11:65365726-65365900:-|nuORF	ENST00000309100.7_1_11:65365726-65365900:-|nuORF	ENST00000309100.7_1_11:65365726-65365900:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.3244018554688	2	517.766906	1033.51926	-0.40799	-0.00021124	-0.95657	-0.00049528	-1.3646	-0.00070652	517.767919005639	41.423	0.20665	41.446	41.324	41.53	0.023006					6	5	2	0	0	0	0.03519	1	3652	3652		64.207	33.89	1	55771			20614	12039	14239	14271	23583	23583					0.0038398192079966975
GPGHTVPPKP	10	Unmodified	_GPGHTVPPKP_					0	0	0		MAP7D1|p.L490V|1|0.38|ENSG00000116871|chr1:36177961-36177961|C/G|missense_variant	MAP7D1|p.L490V|1|0.38|ENSG00000116871|chr1:36177961-36177961|C/G|missense_variant	MAP7D1|p.L490V|1|0.38|ENSG00000116871|chr1:36177961-36177961|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3085632324219	2	493.774534	985.534515	0.024937	1.2313E-05	-0.80128	-0.00039565	-0.77634	-0.00038334	493.774176731789	78.942	0.58353	78.942	78.7	79.283	0					30	13	3	0	0	0	0.03519	1	9815	9815		15.642	0	1	457960			20615	17948	14240	14272	23584	23584					0.041168935086489
GPGKLGKR	8	Unmodified	_GPGKLGKR_					0	0	0			REV__nc|ENSG00000170469|Q86W54-2|SPATA24	REV__nc|ENSG00000170469|Q86W54-2|SPATA24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2490539550781	2	406.758687	811.502821	0.95115	0.00038689	-1.2117	-0.00049287	-0.26055	-0.00010598	406.7582732777253	87.799	0.12255	87.663	87.559	87.682	-0.13613					4	2	2	0	0	0	0.027866	1	10695	10695		8.8223	4.1406	1	145200	+		20616	36921	14241	14273	23585	23585					0.08952945545365765
GPGLLRPL	8	Unmodified	_GPGLLRPL_					0	0	0			REV__ENSG00000173976|ENST00000555633|RAX2	REV__ENSG00000173976|ENST00000555633|RAX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	411.7633361816406	2	411.763438	821.512323	0.20916	8.6126E-05	0.1777	7.3172E-05	0.38687	0.0001593	411.7632863476411	48.286	1.3011	48.353	47.97	49.271	0.066795					78	35	4	0	0	0	0.71717	1	4862	4862		65.897	0	1	2768300	+		20617	26824	14242	14274	23586	23586					0.0944271383089017
GPGLLRPL	8	Unmodified	_GPGLLRPL_					0	0	0			REV__ENSG00000173976|ENST00000555633|RAX2	REV__ENSG00000173976|ENST00000555633|RAX2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	411.763438	821.512323	-0.013442	-5.5348E-06	0.61632	0.00025378	0.60288	0.00024825	411.76346419552954	48.559	1.1649	48.407	48.125	49.29	-0.15277	0.019229	0.0002304	NaN	65.897	82	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2870300	+		20618	26824	14242	14274							0.0944271383089017
GPGLLRPL	8	Unmodified	_GPGLLRPL_					0	0	0			REV__ENSG00000173976|ENST00000555633|RAX2	REV__ENSG00000173976|ENST00000555633|RAX2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	411.763438	821.512323	0.20916	8.6126E-05	0.1777	7.3172E-05	0.38687	0.0001593	411.7632863476411	48.286	1.3011	48.353	47.97	49.271	0.066795	-0.034352	-0.00013082	NaN	65.897	78	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2768300	+		20619	26824	14242	14274							0.0944271383089017
GPGPQISKR	9	Unmodified	_GPGPQISKR_					0	0	0			REV__ENST00000478232.1_1_1:28862693-28863283:+|nuORF	REV__ENST00000478232.1_1_1:28862693-28863283:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2724914550781	2	470.272158	938.529764	0.89577	0.00042125	-0.44054	-0.00020717	0.45523	0.00021408	470.2718642062893	91.209	1.3358	91.22	90.742	92.077	0.011276					80	31	4	0	0	0	0.75397	1	11470	11470		42.396	3.1433	1	4377900	+		20620	33355	14243	14275	23587	23587					0.05804009365908769
GPGPRRKG	8	Unmodified	_GPGPRRKG_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.7464294433594	2	412.746111	823.477669	0.79299	0.0003273	-0.57068	-0.00023554	0.22231	9.176E-05	412.7457786960996	84.338	1.9792	84.338	83.605	85.584	0					109	46	5	0	0	0	1.0574	1	10581	10581		26.796	5.0938	1	6308600	+		20621	20267	14244	14276	23588	23588					0.05886890742806372
GPGQLIARH	9	Unmodified	_GPGQLIARH_					0	0	0		ENST00000564661.1_1_16:766609-767036:+|nuORF	ENST00000564661.1_1_16:766609-767036:+|nuORF	ENST00000564661.1_1_16:766609-767036:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.31329345703125	2	474.772326	947.530098	3.1093	0.0014762	-2.9341	-0.001393	0.17517	8.3164E-05	474.7708602529379	18.579	0.44046	18.579	18.333	18.774	0					17	8	3	0	0	0	0.024487	1	315	315		17.365	9.6747	1	47128			20622	16898	14245	14277	23589	23589					0.05423429085749376
GPGRPGSST	9	Unmodified	_GPGRPGSST_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.9227294921875	2	408.203941	814.39333	0.4832	0.00019724	3.3652	0.0013737	3.8484	0.0015709	408.205299988635	103.44	0.69212	103.44	103.01	103.7	0.0054245					31	16	3	0	0	0	0.024457	1	13210	13210		21.96	6.3181	1	300300	+		20623	35837	14246	14278	23590	23590					-0.02129104864616238
GPGRQAET	8	Unmodified	_GPGRQAET_					0	0	0			REV__ENST00000227520.9_1_11:60617822-60618104:+|nuORF	REV__ENST00000227520.9_1_11:60617822-60618104:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	408.92236328125	2	408.203941	814.39333	1.4185	0.00057903	2.3505	0.00095948	3.769	0.0015385	408.20486638879316	103.51	0.49986	103.5	103.27	103.77	-0.003418					25	11	3	0	0	0	0.027866	1	13195	13195		38.806	1.647	1	287270	+		20624	29385	14247	14279	23591	23591					-0.02129104864616238
GPHPLLTP	8	Unmodified	_GPHPLLTP_					0	0	0			REV__ENSG00000112787|ENST00000680143|FBRSL1	REV__ENSG00000112787|ENST00000680143|FBRSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.7118225097656	2	416.239796	830.465038	-0.016063	-6.6859E-06	-4.1587	-0.001731	-4.1747	-0.0017377	416.23799186997303	25.806	0.68036	25.806	25.403	26.083	0					28	15	3	0	0	0	0.027866	1	1250	1250		57.453	20.424	1	271080	+		20625	22026	14248	14280	23592	23592					0.04302434559906487
GPHPLLTP	8	Unmodified	_GPHPLLTP_					0	0	0			REV__ENSG00000112787|ENST00000680143|FBRSL1	REV__ENSG00000112787|ENST00000680143|FBRSL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	416.239796	830.465038	0.3249	0.00013524	-4.5123	-0.0018782	-4.1874	-0.001743	416.2378067002535	25.526	0.37359	25.606	25.418	25.792	0.08009	-0.13088	-0.00027723	NaN	20.482	23	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315060	+		20626	22026	14248	14280							0.04302434559906487
GPILKQETV	9	Unmodified	_GPILKQETV_					0	0	0		ENST00000560717.5_2_15:65295402-65319196:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.78802490234375	2	492.78985	983.565146	-0.44391	-0.00021875	-2.7105	-0.0013357	-3.1544	-0.0015544	492.7882557787374	20.787	0.9152	20.683	20.277	21.192	-0.10477					39	18	4	0	0	0	0.72875	1	580	580		44.117	1.7207	1	738970			20627	2523	14249	14281	23593	23593					0.07270627103036986
GPILKRLPRKL	11	Unmodified	_GPILKRLPRKL_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.2300109863281	3	430.962597	1289.86596	0.066564	2.8687E-05	-4.2721	-0.0018411	-4.2055	-0.0018124	430.96062393397966	42.628	1.0703	42.628	42.154	43.224	0					57	29	3	0	0	0	0.024782	1	3976	3976		25.126	7.2928	1	226790			20628	4006	14250	14282	23594	23594					0.23262178544155176
GPILKRLPRKL	11	Unmodified	_GPILKRLPRKL_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2300720214844	3	430.962597	1289.86596	-0.040105	-1.7284E-05	-4.2356	-0.0018254	-4.2757	-0.0018427	431.2950363851769	43.02	1.0132	42.881	42.345	43.358	-0.13929					59	27	3	0	0	0	0.024792	1	3969	3969		18.531	12.832	1	207980			20629	4006	14250	14282	23595	23595					0.23262178544155176
GPISLGISLN	10	Unmodified	_GPISLGISLN_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7814025878906	2	485.782025	969.549496	0.83857	0.00040736	-0.948	-0.00046052	-0.10943	-5.316E-05	485.78149542138436	70.943	0.70178	70.65	70.368	71.07	-0.29291					30	16	3	0	0	0	0.80817	1	8530	8530		60.118	4.6141	1	926430			20630	7554	14251	14283	23596	23596					0.06350340585993308
GPIVSLIIG	9	Unmodified	_GPIVSLIIG_					0	0	0			REV__ENST00000225688.3_1_17:17398000-17398240:-|nuORF	REV__ENST00000225688.3_1_17:17398000-17398240:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77984619140625	2	434.778754	867.542954	0.072718	3.1616E-05	2.8406	0.001235	2.9133	0.0012666	434.77984164352523	46.699	1.5772	46.505	46.165	47.742	-0.19387					162	43	6	0	0	0	0.96855	1	4639	4639		26.796	0	1	7314300	+		20631	29373	14252	14284	23597	23597					0.10388447425305003
GPKARPIL	8	Unmodified	_GPKARPIL_					0	0	0			REV__ENST00000538236.1_1_12:123345166-123345832:+|nuORF	REV__ENST00000538236.1_1_12:123345166-123345832:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2461853027344	2	426.276712	850.538872	0.36412	0.00015522	0.47369	0.00020192	0.83781	0.00035714	426.2767580911717	86.803	0.1673	86.825	86.677	86.844	0.021263					5	3	2	0	0	0	0.027866	1	10822	10822		19.36	10.538	1	43970	+		20632	34714	14253	14285	23598	23598					0.10762402722230036
GPKGHVSSL	9	Unmodified	_GPKGHVSSL_					0	0	0		ENSG00000143319|ENST00000368219|ISG20L2;ENST00000496538.1_1_1:156693891-156697171:-|nuORF	ENSG00000143319|ENST00000368219|ISG20L2	ENSG00000143319|ENST00000368219|ISG20L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.245849609375	2	441.245609	880.476666	-0.53278	-0.00023509	0.85729	0.00037827	0.32451	0.00014319	441.2458766348845	21.652	0.95432	21.652	21.244	22.198	0					39	19	3	0	0	0	0.39228	1	678	678		66.429	3.123	1	791130			20633	5631	14254	14286	23599	23599					0.03164631583240407
GPKGHVSSL	9	Unmodified	_GPKGHVSSL_					0	0	0		ENSG00000143319|ENST00000368219|ISG20L2;ENST00000496538.1_1_1:156693891-156697171:-|nuORF	ENSG00000143319|ENST00000368219|ISG20L2	ENSG00000143319|ENST00000368219|ISG20L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2457580566406	2	441.245609	880.476666	-0.18393	-8.1157E-05	0.38826	0.00017132	0.20433	9.0162E-05	441.245665588484	21.689	0.71526	21.599	21.304	22.02	-0.090094					37	14	3	0	0	0	0.31037	2	688	676;688		74.255	13.056	1	783850			20634	5631	14254	14286	23600;23601	23601					0.03164631583240407
GPKGHVSSL	9	Unmodified	_GPKGHVSSL_					0	0	0		ENSG00000143319|ENST00000368219|ISG20L2;ENST00000496538.1_1_1:156693891-156697171:-|nuORF	ENSG00000143319|ENST00000368219|ISG20L2	ENSG00000143319|ENST00000368219|ISG20L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.24578857421875	2	441.245609	880.476666	-0.27924	-0.00012321	0.543	0.0002396	0.26376	0.00011638	441.24571516381116	21.542	1.0652	21.614	21.057	22.122	0.071487					39	21	3	0	0	0	0.39228	2	631	631;644		66.429	15.094	1	767660			20635	5631	14254	14286	23602;23603	23602					0.03164631583240407
GPKIKMGWY	9	Oxidation (M)	_GPKIKM(Oxidation (M))GWY_		GPKIKM(1)GWY		GPKIKM(61)GWY	0	0	1			REV__ENSG00000166743|ENST00000520010|ACSM1	REV__ENSG00000166743|ENST00000520010|ACSM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.2869873046875	2	548.28642	1094.55829	-0.42813	-0.00023474	2.0917	0.0011468	1.6636	0.00091211	548.2874178814001	47.666	0.76226	47.569	47.277	48.039	-0.097553					57	20	4	0	0	0	0.4752	1	4694	4694		60.972	14.515	1	2575500	+		20636	26050	14255	14287	23604	23604		772			0.014789909508181154
GPKKNKHS	8	Unmodified	_GPKKNKHS_					0	0	0		ENSG00000146856|ENST00000436302|AGBL3;nc|ENSG00000146856|Q8NEM8|AGBL3	ENSG00000146856|ENST00000436302|AGBL3	ENSG00000146856|ENST00000436302|AGBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2587890625	2	448.259051	894.503549	-0.45696	-0.00020483	0.23802	0.00010669	-0.21894	-9.814E-05	448.25902243845417	89.198	2.2068	89.035	88.471	90.677	-0.1626					108	52	4	0	0	0	0.96769	2	10915	10915;10928		42.396	8.8806	1	9232100			20637	5914	14256	14288	23605;23606	23605					0.05207740194418875
GPKKNKHS	8	Unmodified	_GPKKNKHS_					0	0	0		ENSG00000146856|ENST00000436302|AGBL3;nc|ENSG00000146856|Q8NEM8|AGBL3	ENSG00000146856|ENST00000436302|AGBL3	ENSG00000146856|ENST00000436302|AGBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2586975097656	2	448.259051	894.503549	-0.21973	-9.8495E-05	-0.025537	-1.1447E-05	-0.24526	-0.00010994	448.2589085096466	89.199	1.7144	89.071	88.532	90.246	-0.12774					103	40	5	0	0	0	1.043	1	10878	10878		30.504	1.3541	1	9247200			20638	5914	14256	14288	23607	23607					0.05207740194418875
GPKKTKTK	8	Unmodified	_GPKKTKTK_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.29205322265625	2	444.287277	886.560001	1.0729	0.00047668	0.27752	0.0001233	1.3504	0.00059997	444.2871101524897	37.271	0.25875	37.271	37.12	37.379	0					13	6	3	0	0	0	0.027866	1	3014	3014		50.025	0	1	101400	+		20639	23228	14257	14289	23608	23608					0.11218368031086356
GPKLLPLHTL	10	Unmodified	_GPKLLPLHTL_					0	0	0			REV__nc|ENSG00000020577|Q9UPU9-3|SAMD4A	REV__nc|ENSG00000020577|Q9UPU9-3|SAMD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2750854492188	2	544.844959	1087.67537	-0.47152	-0.0002569	1.8017	0.00098166	1.3302	0.00072475	544.8479228372928	77.448	0.75235	77.237	76.912	77.664	-0.21087					26	17	3	0	0	0	0.03519	1	9561	9561		49.442	7.0454	1	188040	+		20640	19993	14258	14290	23609	23609					0.1350347216209684
GPKNQVRP	8	Unmodified	_GPKNQVRP_					0	0	0			REV__AluJr_dup72800|chr17:59204747-59205047:+|3.2254709061595577|0.1893768988027336|4.09|522.0|5|2|sense	REV__AluJr_dup72800|chr17:59204747-59205047:+|3.2254709061595577|0.1893768988027336|4.09|522.0|5|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2586364746094	2	448.259051	894.503549	0.41659	0.00018674	-0.5403	-0.00024219	-0.12371	-5.5455E-05	448.25867764123615	89.029	1.3807	89.029	88.555	89.936	0					85	32	4	0	0	0	1.0239	2	11259	11212;11259		33.516	1.2474	1	7392500	+		20641	19117	14259	14291	23610;23611	23611					0.05207740194418875
GPKNQVRP	8	Unmodified	_GPKNQVRP_					0	0	0			REV__AluJr_dup72800|chr17:59204747-59205047:+|3.2254709061595577|0.1893768988027336|4.09|522.0|5|2|sense	REV__AluJr_dup72800|chr17:59204747-59205047:+|3.2254709061595577|0.1893768988027336|4.09|522.0|5|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2590026855469	2	448.259051	894.503549	-0.21973	-9.8495E-05	-0.025537	-1.1447E-05	-0.24526	-0.00010994	448.2589085096466	89.199	1.7144	89.071	88.532	90.246	-0.12774					103	40	5	0	0	0	1.0338	1	10924	10924		31.955	2.8053	1	9247200	+		20642	19117	14259	14291	23612	23612					0.05207740194418875
GPKNQVRP	8	Unmodified	_GPKNQVRP_					0	0	0			REV__AluJr_dup72800|chr17:59204747-59205047:+|3.2254709061595577|0.1893768988027336|4.09|522.0|5|2|sense	REV__AluJr_dup72800|chr17:59204747-59205047:+|3.2254709061595577|0.1893768988027336|4.09|522.0|5|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2588806152344	2	448.259051	894.503549	0.20031	8.9789E-05	-0.47015	-0.00021075	-0.26985	-0.00012096	448.25872211244354	89.189	1.6752	89.051	88.482	90.157	-0.13761					97	39	4	0	0	0	0.91239	2	10903	10890;10903		50.025	5.9077	1	8594700	+		20643	19117	14259	14291	23613;23614	23614					0.05207740194418875
GPKPQPSLLTL	11	Unmodified	_GPKPQPSLLTL_					0	0	0			REV__ENST00000592061.1_1_19:19738235-19738493:-|nuORF	REV__ENST00000592061.1_1_19:19738235-19738493:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8434448242188	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0075	1	11076	11076		35.152	2.3396	1	6382400	+		20644	35738	14260	14292	23615	23615					0.10690847091291289
GPKPVRQTG	9	Unmodified	_GPKPVRQTG_					0	0	0			REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2727355957031	2	470.272158	938.529764	-0.81684	-0.00038414	1.3049	0.00061364	0.48803	0.00022951	470.2727082504141	91.182	1.3816	91.182	90.719	92.101	0					75	32	4	0	0	0	0.96906	1	11531	11531		26.693	5.746	1	4597800	+		20645	26329	14261	14293	23616	23616					0.058040093658974
GPKRFDQLPA	10	Unmodified	_GPKRFDQLPA_					0	0	0		ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39;nc|ENSG00000204618|Q9H2S5-2|RNF39	ENSG00000204618|ENST00000244360|RNF39	ENSG00000204618|ENST00000244360|RNF39	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8133544921875	2	564.811648	1127.60874	-0.085372	-4.8219E-05	2.9744	0.00168	2.889	0.0016317	564.8133656954294	17.846	0.89491	17.64	17.216	18.11	-0.20669					25	17	2	0	0	0	1.0781	1	229	229		35.618	1.4457	1	92940			20646	10360	14262	14294	23617	23617					0.050042366001889604
GPKRHGPRP	9	Unmodified	_GPKRHGPRP_					0	0	0			REV__ENSG00000185924|ENST00000331238|RTN4RL1	REV__ENSG00000185924|ENST00000331238|RTN4RL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2896423339844	2	501.291217	1000.56788	0.31679	0.0001588	-1.7069	-0.00085564	-1.3901	-0.00069684	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.80658	1	10383	10383		38.806	3.1879	1	1878500	+		20647	27809	14263	14295	23618	23618					0.06761940071226036
GPKRHGSL	8	Unmodified	_GPKRHGSL_					0	0	0			REV__nc|ENSG00000132185|Q7L513-7|FCRLA	REV__nc|ENSG00000132185|Q7L513-7|FCRLA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2461242675781	2	426.245944	850.477334	0.074352	3.1692E-05	0.23102	9.8472E-05	0.30537	0.00013016	426.24594874726847	86.792	1.9596	86.792	86.085	88.044	0					116	46	5	0	0	0	1.0338	1	10923	10923		31.955	6.5047	1	11239000	+		20648	23260	14264	14296	23619	23619					0.046114710229517186
GPLESVAMES	10	Unmodified	_GPLESVAMES_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7645568847656	2	510.239332	1018.46411	-0.37593	-0.00019181	1.2766	0.00065137	0.90067	0.00045956	510.2400669410178	25.695	0.48322	25.524	25.288	25.771	-0.17078					19	11	2	0	0	0	0.03519	1	1242	1242		40.778	1.972	1	100900	+		20649	28096	14265	14297	23620	23620					-0.04438192661973517
GPLESVAMES	10	Unmodified	_GPLESVAMES_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7641906738281	2	510.239332	1018.46411	-0.72583	-0.00037034	1.8145	0.00092581	1.0886	0.00055546	510.24003313039105	25.76	0.58385	25.588	25.241	25.825	-0.17151					23	13	2	0	0	0	0.03519	1	1229	1229		49.442	4.9105	1	82772	+		20650	28096	14265	14297	23621	23621					-0.04438192661973517
GPLGILALLD	10	Unmodified	_GPLGILALLD_					0	0	0		MYH9|p.P522L|1|0.27|ENSG00000100345|chr22:36312212-36312212|G/A|missense_variant	MYH9|p.P522L|1|0.27|ENSG00000100345|chr22:36312212-36312212|G/A|missense_variant	MYH9|p.P522L|1|0.27|ENSG00000100345|chr22:36312212-36312212|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.3363952636719	2	491.302593	980.590633	-0.44489	-0.00021858	-0.057782	-2.8388E-05	-0.50267	-0.00024696	491.30279232549503	82.205	0.3773	82.231	82.023	82.401	0.025711					12	8	2	0	0	0	0.03519	1	10189	10189		25.45	1.2474	1	73816			20651	18009	14266	14298	23622	23622					0.09956101625448355
GPLLVGPTR	9	Unmodified	_GPLLVGPTR_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400-SFSWAP|1|fusion;REV__nc|ENSG00000185684|Q6ZTU2-2|EP400P1	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.26190185546875	2	455.279452	908.544351	2.4879	0.0011327	-3.2595	-0.001484	-0.77154	-0.00035127	455.27784468015636	18.65	0.34485	18.65	18.577	18.922	0					8	6	2	0	0	0	0.024354	1	319	319		47.916	0	1	12871	+		20652	27576;35996;37017	14267	14299	23623	23623					0.08642081514028632
GPLLVGPTR	9	Unmodified	_GPLLVGPTR_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400-SFSWAP|1|fusion;REV__nc|ENSG00000185684|Q6ZTU2-2|EP400P1	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.279452	908.544351	0.74349	0.0003385	-1.1734	-0.00053421	-0.42988	-0.00019572	455.27863810758936	18.874	0.59359	18.717	18.495	19.088	-0.15637	0.016709	0.00037106	NaN	53.351	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121720	+		20653	27576;35996;37017	14267	14299							0.08642081514028632
GPLLVGPTR	9	Unmodified	_GPLLVGPTR_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400-SFSWAP|1|fusion;REV__nc|ENSG00000185684|Q6ZTU2-2|EP400P1	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	455.279452	908.544351	0.42462	0.00019332	-0.0047716	-2.1724E-06	0.41985	0.00019115	455.27926917870053	18.936	0.39462	18.732	18.51	18.904	-0.20371	0.031792	0.0014351	NaN	53.351	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82673	+		20654	27576;35996;37017	14267	14299							0.08642081514028632
GPLLVGPTR	9	Unmodified	_GPLLVGPTR_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400-SFSWAP|1|fusion;REV__nc|ENSG00000185684|Q6ZTU2-2|EP400P1	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	455.279452	908.544351	2.4458	0.0011135	-2.3067	-0.0010502	0.13904	6.3302E-05	455.2782682409524	18.89	0.39585	18.648	18.424	18.82	-0.24256	-0.052602	-0.00066095	NaN	53.351	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102360	+		20655	27576;35996;37017	14267	14299							0.08642081514028632
GPLPLLLLLF	10	Unmodified	_GPLPLLLLLF_					0	0	0			REV__ENSG00000101346|ENST00000375749|POFUT1	REV__ENSG00000101346|ENST00000375749|POFUT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.310791015625	2	548.362453	1094.71035	-0.65891	-0.00036132	1.5175	0.00083217	0.85864	0.00047085	548.363205820742	56.17	0.17125	56.17	56.07	56.241	0					7	4	2	0	0	0	0.03519	1	6247	6247		35.201	22.242	1	102240	+		20656	21221	14268	14300	23624	23624					0.16678714970043984
GPLPSPLPD	9	Unmodified	_GPLPSPLPD_					0	0	0			REV__ENSG00000171443|ENST00000301073|ZNF524	REV__ENSG00000171443|ENST00000301073|ZNF524	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.25140380859375	2	446.742368	891.470183	0.25042	0.00011187	-3.0048	-0.0013424	-2.7544	-0.0012305	446.74083504109046	24.627	0.97319	24.705	24.319	25.293	0.078346					51	21	4	0	0	0	0.024457	1	1116	1116		45.952	27.628	1	589540	+		20657	26562	14269	14301	23625	23625					0.02010693631848426
GPLRATTLA	9	Unmodified	_GPLRATTLA_					0	0	0			REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2686767578125	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.59099	1	3121	3121		53.351	3.9099	1	136700000	+		20658	34480	14270	14302	23626	23626					0.07029491134369437
GPLSVPFPTP	10	Unmodified	_GPLSVPFPTP_					0	0	0		ENST00000279022.6_1_20:35177837-35178098:+|nuORF	ENST00000279022.6_1_20:35177837-35178098:+|nuORF	ENST00000279022.6_1_20:35177837-35178098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.29180908203125	2	506.279118	1010.54368	-0.48073	-0.00024338	1.3442	0.00068055	0.86349	0.00043717	506.2796193630357	96.155	0.57626	96.155	95.864	96.44	0					20	13	2	0	0	0	0.03519	1	12258	12258		19.997	4.355	1	91687			20659	11707	14271	14303	23627	23627					0.03883242074334703
GPLTLSEE	8	Unmodified	_GPLTLSEE_					0	0	0			REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF	REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.2377014160156	2	423.216183	844.417813	-0.57331	-0.00024263	2.3915	0.0010121	1.8182	0.00076951	423.2170264741202	32.397	0.4853	32.409	32.221	32.706	0.011795					24	12	3	0	0	0	0.027866	1	2276	2276		44.531	2.0566	1	246000	+		20660	30439	14272	14304	23628	23628					-0.010618895017614705
GPLYPMHGG	9	Unmodified	_GPLYPMHGG_					0	0	0			REV__ENST00000254436.7_1_11:4411412-4414892:-|nuORF	REV__ENST00000254436.7_1_11:4411412-4414892:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2672424316406	2	464.720913	927.427273	0.8671	0.00040296	0.29641	0.00013775	1.1635	0.00054071	464.7209132405404	42.792	0.83804	42.818	42.459	43.298	0.026016					47	22	3	0	0	0	0.024289	1	3896	3896		49.211	19.369	1	1272100	+		20661	29527	14273	14305	23629	23629					-0.039343996972206696
GPMKTRVL	8	Unmodified	_GPMKTRVL_					0	0	0		ENST00000545800.1_1_11:64014613-64014649:-|nuORF	ENST00000545800.1_1_11:64014613-64014649:-|nuORF	ENST00000545800.1_1_11:64014613-64014649:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	451.2703857421875	2	451.26803	900.521507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.28	1	105.15	104.65	105.65	-0.13099								0	0	0	0.78881	1	13111	13111		35.201	2.3883	1				20662	16496	14274	14306	23630	23630					0.06726739124928827
GPNGGIVTSL	10	Unmodified	_GPNGGIVTSL_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.75146484375	2	457.750724	913.486896	-0.46351	-0.00021217	0.54788	0.00025079	0.084373	3.8622E-05	457.7509028217785	60.673	0.77835	60.673	60.366	61.144	0					46	20	3	0	0	0	0.0027948	3	6992	6980;6992;7005		186.09	51.493	1	5112500			20663	10144	14275	14307	23631;23632;23633	23632					0.026691945178299648
GPNGGIVTSL	10	Unmodified	_GPNGGIVTSL_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	457.750724	913.486896	-0.45239	-0.00020708	0.5634	0.0002579	0.11101	5.0813E-05	457.75091442251005	60.875	0.78239	60.662	60.384	61.166	-0.21339					47	20	3	0	0	0	0.021365	4	6986	6986;6996;7009;7022		161.9	37.304	1	4781000			20664	10144	14275	14307	23634;23635;23636;23637	23634					0.026691945178299648
GPNGGIVTSL	10	Unmodified	_GPNGGIVTSL_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.75079345703125	2	457.750724	913.486896	-1.0828	-0.00049564	1.2164	0.00055682	0.13365	6.1179E-05	457.75122290578093	60.587	0.85902	60.666	60.28	61.139	0.078888					50	22	3	0	0	0	0.0046684	3	6902	6890;6902;6915		180.93	65.467	1	5630300			20665	10144	14275	14307	23638;23639;23640	23639					0.026691945178299648
GPNLIQSHRA	10	Unmodified	_GPNLIQSHRA_					0	0	0			REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.326904296875	2	546.799072	1091.58359	-0.75816	-0.00041456	-2.6524	-0.0014503	-3.4106	-0.0018649	546.7974048317551	42.938	0.65547	42.938	42.605	43.261	0					32	17	2	0	0	0	0.03519	1	4019	4019		60.118	12.159	1	598850	+		20666	34974	14276	14308	23641	23641					0.0414618179761419
GPNLIQSHRA	10	Unmodified	_GPNLIQSHRA_					0	0	0			REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3270263671875	2	546.799072	1091.58359	-0.77462	-0.00042356	-2.6208	-0.0014331	-3.3955	-0.0018566	546.7974462709013	43.114	0.83352	42.974	42.413	43.247	-0.13929					33	22	2	0	0	0	0.03519	1	3946	3946		60.118	10.677	1	551560	+		20667	34974	14276	14308	23642	23642					0.0414618179761419
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	579.317138671875	2	579.317294	1156.62004	-1.5715	-0.00091042	1.1021	0.00063846	-0.46946	-0.00027196	579.3178380643641	24.319	1.013	24.319	23.951	24.964	0					51	22	4	0	0	0	0.53345	1	1047	1047		74.165	20.814	1	930760			20668	2888	14277	14309	23643	23643					0.04799013903675586
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.3172607421875	2	579.317294	1156.62004	-1.4813	-0.00085813	1.2434	0.00072032	-0.23788	-0.00013781	579.3179122845305	24.337	1.1108	24.29	23.913	25.024	-0.047148					54	24	4	0	0	0	0.42031	2	1037	1037;1048		81.525	28.174	1	989380			20669	2888	14277	14309	23644;23645	23644					0.04799013903675586
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.3170776367188	2	579.317294	1156.62004	0.015055	8.7219E-06	-0.28361	-0.0001643	-0.26856	-0.00015558	579.317049554055	24.214	0.91045	24.292	23.912	24.823	0.078344					51	19	4	0	0	0	0.38769	1	991	991		83.647	21.54	1	943090			20670	2888	14277	14309	23646	23646					0.04799013903675586
GPNRASPF	8	Unmodified	_GPNRASPF_					0	0	0			REV__ENST00000268035.10_1_15:99502740-99502965:+|nuORF	REV__ENST00000268035.10_1_15:99502740-99502965:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.2378845214844	2	423.216852	844.419151	-0.10662	-4.5122E-05	0.53543	0.0002266	0.42881	0.00018148	423.2169718499281	32.196	0.91957	32.259	32.003	32.923	0.062885					35	23	3	0	0	0	0.027866	1	2206	2206		46.766	19.97	1	374210	+		20671	29775	14278	14310	23647	23647					-0.009282106223395203
GPNSNRSQF	9	Unmodified	_GPNSNRSQF_					0	0	0		nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7427062988281	2	503.73868	1005.46281	-1.2501	-0.00062973	1.0951	0.00055162	-0.15505	-7.8106E-05	503.7392658472632	24.467	0.84685	24.42	24.133	24.98	-0.047148					51	18	4	0	0	0	0.40693	1	1071	1071		65.465	7.6541	1	2361100			20672	2117	14279	14311	23648	23648					-0.039706459158537655
GPNSSTNM	8	Unmodified	_GPNSSTNM_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.1702880859375	2	404.16871	806.322867	0.19936	8.0575E-05	2.1688	0.00087656	2.3682	0.00095714	404.17002060116556	76.215	1.2999	75.943	75.582	76.882	-0.27266					96	31	5	0	0	0	0.96719	4	9016	9016;9026;9037;9049		42.474	8.9589	1	5916600	+		20673	28272	14280	14312	23649;23650;23651;23652	23649					-0.0880414624457444
GPNSSTNM	8	Unmodified	_GPNSSTNM_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.1701965332031	2	404.16871	806.322867	0.77366	0.00031269	1.7592	0.00071102	2.5329	0.0010237	404.16976707984236	76.18	1.4585	75.922	75.438	76.897	-0.25803					98	35	5	0	0	0	0.99042	2	9036	9036;9048		38.806	4.366	1	5377600	+		20674	28272	14280	14312	23653;23654	23653					-0.0880414624457444
GPNSSTNM	8	Unmodified	_GPNSSTNM_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.1703796386719	2	404.16871	806.322867	-0.13149	-5.3143E-05	2.4383	0.00098548	2.3068	0.00093233	404.17013294418155	75.927	1.58	75.751	75.312	76.892	-0.17548					95	38	5	0	0	0	1.0239	1	8991	8991		33.516	0	1	5581700	+		20675	28272	14280	14312	23655	23655					-0.0880414624457444
GPPELDCT	8	Unmodified	_GPPELDCT_					0	0	0			REV__ENST00000412414.6_1_2:207944323-207944539:-|nuORF	REV__ENST00000412414.6_1_2:207944323-207944539:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.71197509765625	2	416.181286	830.348019	-0.25266	-0.00010515	2.6216	0.0010911	2.3689	0.00098591	416.182265920215	25.76	0.36406	25.589	25.371	25.735	-0.17078					15	8	3	0	0	0	0.027866	1	1243	1243		24.203	3.7209	1	101080	+		20676	31996	14281	14313	23656	23656					-0.07394091442029094
GPPELDCT	8	Unmodified	_GPPELDCT_					0	0	0			REV__ENST00000412414.6_1_2:207944323-207944539:-|nuORF	REV__ENST00000412414.6_1_2:207944323-207944539:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	416.181286	830.348019	-0.48826	-0.00020321	2.742	0.0011412	2.2537	0.00093795	416.1824100386411	25.807	0.42645	25.635	25.324	25.75	-0.17151	0.023201	7.1908E-05	NaN	17.365	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108710	+		20677	31996	14281	14313							-0.07394091442029094
GPPEWQVQ	8	Unmodified	_GPPEWQVQ_					0	0	0			REV__ENSG00000105246|ENST00000221847|EBI3	REV__ENSG00000105246|ENST00000221847|EBI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.26153564453125	2	470.729792	939.445031	0.68829	0.000324	-4.3526	-0.0020489	-3.6643	-0.0017249	470.7275131947129	25.91	0.37763	25.99	25.792	26.169	0.08009					13	8	2	0	0	0	0.027866	1	1246	1246		37.159	18.835	1	46502	+		20678	21503	14282	14314	23657	23657					-0.027113611707136442
GPPGERRPGT	10	Unmodified	_GPPGERRPGT_					0	0	0			REV__ENST00000479440.1_1_7:44613191-44613521:-|nuORF	REV__ENST00000479440.1_1_7:44613191-44613521:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2696533203125	2	512.270147	1022.52574	-0.064022	-3.2797E-05	1.8639	0.00095485	1.7999	0.00092205	512.2708564123549	104.09	1.5978	104.09	103.57	105.16	0.0031357					89	45	3	0	0	0	1.1307	1	13318	13318		26.693	3.6504	1	332150	+		20679	33399	14283	14315	23658	23658					0.015379198721802823
GPPGPKFVT	9	Unmodified	_GPPGPKFVT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2742614746094	2	450.252903	898.491253	0.36834	0.00016585	-3.7642	-0.0016949	-3.3959	-0.001529	450.2513194946428	92.237	0.22833	92.246	92.076	92.304	0.0094147					8	5	3	0	0	0	0.024412	1	11602	11602		31.955	2.8053	1	153280	+		20680	25017	14284	14316	23659	23659					0.03794703731375648
GPPGSSRPVK	10	Unmodified	_GPPGSSRPVK_					0	0	0		nc|ENSG00000105701|Q14318|FKBP8;ENSG00000105701|ENST00000608443|FKBP8	nc|ENSG00000105701|Q14318|FKBP8	nc|ENSG00000105701|Q14318|FKBP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7941589355469	2	491.277441	980.540328	-0.56761	-0.00027885	3.1612	0.001553	2.5936	0.0012742	491.2785615888959	29.184	0.75212	29.187	28.839	29.591	0.0031376					33	18	3	0	0	0	0.03519	1	1720	1720		60.118	4.6141	1	790560			20681	2713	14285	14317	23660	23660					0.04927992020327565
GPPHPLHSGQ	10	Unmodified	_GPPHPLHSGQ_					0	0	0			REV__ENST00000360688.3_1_16:30124309-30124839:-|nuORF	REV__ENST00000360688.3_1_16:30124309-30124839:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3064575195312	2	513.759415	1025.50428	-0.89826	-0.00046149	-1.8022	-0.00092589	-2.7004	-0.0013874	513.7580350067143	53.241	0.42892	53.337	53.127	53.556	0.095669					18	11	2	0	0	0	0.03519	1	5701	5701		29.15	0	1	92200	+		20682	30918	14286	14318	23661	23661					-0.007454651565240056
GPPILPLHTG	10	Unmodified	_GPPILPLHTG_					0	0	0			REV__ENST00000421442.2_2_3:184090707-184093318:-|nuORF	REV__ENST00000421442.2_2_3:184090707-184093318:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2901306152344	2	501.292559	1000.57057	-0.4045	-0.00020277	-4.3211	-0.0021661	-4.7256	-0.0023689	501.2902410582537	98.333	1.0191	98.167	97.834	98.853	-0.1652					56	24	3	0	0	0	1.1259	1	12187	12187		24.203	0	1	1431700	+		20683	29299	14287	14319	23662	23662					0.07030350685511166
GPPKQYRTTT	10	Unmodified	_GPPKQYRTTT_					0	0	0			REV__ENST00000272217.6_1_1:202102688-202103180:-|nuORF	REV__ENST00000272217.6_1_1:202102688-202103180:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.8082275390625	2	574.806562	1147.59857	4.0221	0.0023119	-1.2455	-0.00071593	2.7766	0.001596	574.8056713636646	18.052	0.8699	18.112	17.825	18.695	0.06036					30	18	2	0	0	0	1.089	1	204	204		34.173	3.6689	1	69054	+		20684	29809	14288	14320	23663	23663					0.030676288749418745
GPPLAMVLL	9	Unmodified	_GPPLAMVLL_					0	0	0			REV__ENSG00000177202|ENST00000321762|SPACA4	REV__ENSG00000177202|ENST00000321762|SPACA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.76690673828125	2	455.775157	909.53576	0.051263	2.3364E-05	4.1213	0.0018784	4.1726	0.0019018	455.7769981927605	23.749	0.93164	23.749	23.321	24.253	0					52	21	3	0	0	0	0.024389	1	913	913		39.021	0.21535	1	318420	+		20685	27093	14289	14321	23664	23664					0.07737391553212092
GPPLCTRVLR	10	Unmodified	_GPPLCTRVLR_					0	0	0			REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF	REV__ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.3250732421875	2	556.323868	1110.63318	1.0208	0.00056789	2.0222	0.001125	3.043	0.0016929	556.3249478270546	19.341	0.48649	19.341	19.07	19.556	0					23	9	3	0	0	0	1.089	1	403	403		34.173	0.25091	1	209070	+		20686	28807	14290	14322	23665	23665					0.082291734820501
GPPMMPPL	8	Unmodified	_GPPMMPPL_					0	0	0			REV__nc|ENSG00000063245|Q9Y6I3-3|EPN1	REV__nc|ENSG00000063245|Q9Y6I3-3|EPN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.24041748046875	2	420.211335	838.408117	0.18636	7.8311E-05	3.4797	0.0014622	3.6661	0.0015405	420.2134911689467	37.308	0.42389	37.115	36.966	37.39	-0.193					13	10	2	0	0	0	0.027866	1	3016	3016		33.493	8.989	1	72440	+		20687	20272	14291	14323	23666	23666					-0.01755072312471384
GPPPPNMTTN	10	Unmodified	_GPPPPNMTTN_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1;ENST00000608055.1_1_11:128628003-128638319:+|nuORF	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7920532226562	2	513.239667	1024.46478	-0.12602	-6.4678E-05	1.7045	0.00087484	1.5785	0.00081016	513.2414431792292	25.303	0.36805	25.383	25.254	25.622	0.08009					12	8	2	0	0	0	0.03519	1	1151	1151		46.457	5.6786	1	43576			20688	6224	14292	14324	23667	23667					-0.04647353222264883
GPPRRAPTP	9	Unmodified	_GPPRRAPTP_					0	0	0		ENST00000315251.10_1_3:53880348-53880405:-|nuORF	ENST00000315251.10_1_3:53880348-53880405:-|nuORF	ENST00000315251.10_1_3:53880348-53880405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.3003845214844	2	474.772326	947.530098	-0.35193	-0.00016709	0.026748	1.2699E-05	-0.32518	-0.00015439	474.7721967361197	39.378	0.78408	39.279	38.983	39.767	-0.098755					46	21	3	0	0	0	0.024397	1	3389	3389		39.253	8.7492	1	939790			20689	12134	14293	14325	23668	23668					0.05423429085760745
GPPSRLFQ	8	Unmodified	_GPPSRLFQ_					0	0	0		ENST00000322122.7_2_16:31225440-31226132:+|nuORF	ENST00000322122.7_2_16:31225440-31226132:+|nuORF	ENST00000322122.7_2_16:31225440-31226132:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2450256347656	2	451.248152	900.481751	-0.25502	-0.00011508	-3.4673	-0.0015646	-3.7223	-0.0016797	451.2464284842014	20.686	0.57092	20.581	20.326	20.897	-0.10477					17	11	2	0	0	0	0.027866	1	531	531		31.53	15.057	1	17664			20690	12216	14294	14326	23669	23669					0.02752935445857929
GPPSRLFQ	8	Unmodified	_GPPSRLFQ_					0	0	0		ENST00000322122.7_2_16:31225440-31226132:+|nuORF	ENST00000322122.7_2_16:31225440-31226132:+|nuORF	ENST00000322122.7_2_16:31225440-31226132:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.248152	900.481751	-0.75673	-0.00034147	-2.7395	-0.0012362	-3.4962	-0.0015777	451.2464673664278	20.496	0.72365	20.496	20.225	20.949	0	-0.042582	0.00031425	NaN	31.53	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11976			20691	12216	14294	14326							0.02752935445857929
GPPVKRVV	8	Unmodified	_GPPVKRVV_					0	0	0			REV__nc|ENSG00000137834|O43541-2|SMAD6	REV__nc|ENSG00000137834|O43541-2|SMAD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.2462158203125	2	426.276712	850.538872	0.80941	0.00034503	2.7671	0.0011796	3.5765	0.0015246	426.2777043341096	87.001	0.20696	86.859	86.796	87.003	-0.14217					6	4	2	0	0	0	0.027866	1	10581	10581		8.8223	0.59103	1	32754	+		20692	23790	14295	14327	23670	23670					0.10762402722241404
GPPYQRRGSL	10	Unmodified	_GPPYQRRGSL_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.8065185546875	2	565.806897	1129.59924	-0.78682	-0.00044519	0.058862	3.3304E-05	-0.72796	-0.00041188	565.8067429670461	28.504	1.3345	28.584	27.759	29.093	0.080811					85	32	4	0	0	0	1.0719	1	1609	1609		36.447	2.2742	1	1675400			20693	18765	14296	14328	23671	23671					0.039624683146712414
GPQAPVFEFV	10	Unmodified	_GPQAPVFEFV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3164672851562	2	545.782025	1089.5495	-0.17235	-9.4067E-05	-0.011576	-6.3179E-06	-0.18393	-0.00010038	546.2834231213359	91.143	0.57475	91.003	90.784	91.359	-0.13942					17	13	2	0	0	0	0.03519	1	11194	11194		30.318	0	1	173910			20694	7968	14297	14329	23672	23672					0.008303405860033308
GPQEDELLIL	10	Unmodified	_GPQEDELLIL_					0	0	0			REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8016967773438	2	563.803154	1125.59175	0.65679	0.0003703	-2.7305	-0.0015395	-2.0737	-0.0011692	563.80213607495	107.12	0.68301	107.12	106.75	107.43	0					35	19	2	0	0	0	1.0002	1	13745	13745		45.972	5.1941	1	190150	+		20695	24414	14298	14330	23673	23673					0.033982712037413876
GPQGDFGRDGM	11	Unmodified	_GPQGDFGRDGM_					0	0	0			REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.744873046875	2	568.743105	1135.47166	-1.259	-0.00071606	4.2627	0.0024244	3.0037	0.0017083	568.7453732007142	24.896	1.4798	24.896	24.563	26.043	0					79	34	4	0	0	0	0.79111	1	1122	1122		58.23	6.8945	1	1967200	+		20696	19437	14299	14331	23674	23674					-0.09066040341690496
GPQGDFGRDGM	11	Unmodified	_GPQGDFGRDGM_					0	0	0			REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.7449340820312	2	568.743105	1135.47166	-1.2134	-0.00069012	4.1327	0.0023504	2.9193	0.0016603	568.7453903779912	24.96	1.3959	24.925	24.591	25.987	-0.034395					74	32	3	0	0	0	0.72712	2	1118	1118;1129		62.107	16.135	1	2648100	+		20697	19437	14299	14331	23675;23676	23675					-0.09066040341690496
GPQGDFGRDGM	11	Unmodified	_GPQGDFGRDGM_					0	0	0			REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.7449951171875	2	568.743105	1135.47166	-0.49746	-0.00028293	3.1657	0.0018005	2.6682	0.0015175	568.7448979988617	24.725	1.4218	24.804	24.455	25.877	0.078344					71	32	3	0	0	0	0.849	1	1054	1054		54.722	11.858	1	2385100	+		20698	19437	14299	14331	23677	23677					-0.09066040341690496
GPQGDFGRDGM	11	Unmodified	_GPQGDFGRDGM_					0	0	0			REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	REV__chr3:48567190-48567710|137|98.23|0.77|7.0|-|0|COL7A1,COL7A1|1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	568.743105	1135.47166	-0.49746	-0.00028293	3.1657	0.0018005	2.6682	0.0015175	568.7448979988617	24.725	1.4218	24.804	24.455	25.877	0.078344	-0.071541	-0.0007929	NaN	62.107	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2385100	+		20699	19437	14299	14331							-0.09066040341690496
GPQGKKGKN	9	Unmodified	_GPQGKKGKN_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2639465332031	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	0.94809	1	9777	9777		29.15	1.2673	1	4140300			20700	1307	14300	14332	23678	23678					0.05435722848858404
GPQKRQSL	8	Unmodified	_GPQKRQSL_					0	0	0			REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2635803222656	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0106	1	10225	10225		35.618	6.4687	1	2920900	+		20701	37759	14301	14333	23679	23679					0.054357228488470355
GPQKRQSL	8	Unmodified	_GPQKRQSL_					0	0	0			REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2640075683594	2	457.264333	912.514114	0.19667	8.9932E-05	-0.16674	-7.6245E-05	0.029932	1.3687E-05	457.2641530854736	78.972	2.3995	78.741	77.586	79.985	-0.23141					139	56	5	0	0	0	1.043	1	9480	9480		30.504	2.2494	1	1085400	+		20702	37759	14301	14333	23680	23680					0.054357228488470355
GPQKRQSL	8	Unmodified	_GPQKRQSL_					0	0	0			REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2637634277344	2	457.264333	912.514114	0.17052	7.7972E-05	-0.16769	-7.6678E-05	0.0028298	1.2939E-06	457.26418172468357	78.803	2.5833	78.647	77.361	79.944	-0.15591					144	60	5	0	0	0	1.0106	1	9388	9388		35.618	2.1027	1	998950	+		20703	37759	14301	14333	23681	23681					0.054357228488470355
GPQKRQSL	8	Unmodified	_GPQKRQSL_					0	0	0			REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	REV__UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2636413574219	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0106	1	9873	9873		35.618	1.4457	1	3503800	+		20704	37759	14301	14333	23682	23682					0.054357228488470355
GPQLARIN	8	Unmodified	_GPQLARIN_					0	0	0		ENST00000395348.7_1_10:61444064-61469743:-|nuORF	ENST00000395348.7_1_10:61444064-61469743:-|nuORF	ENST00000395348.7_1_10:61444064-61469743:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7800598144531	2	434.753601	867.49265	0.10922	4.7483E-05	-0.32969	-0.00014333	-0.22047	-9.585E-05	434.75369898185664	40.939	0.38062	40.962	40.73	41.111	0.023003					15	10	2	0	0	0	0.027866	1	3589	3589		47.916	12.715	1	121150			20705	13515	14302	14334	23683	23683					0.0536033782012737
GPQLPLSRPMD	11	Unmodified	_GPQLPLSRPMD_					0	0	0			REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.214599609375	3	404.213141	1209.61759	0.050651	2.0474E-05	3.2532	0.001315	3.3039	0.0013355	404.214490318942	28.496	0.88581	28.492	28.199	29.085	-0.0042019					49	20	4	0	0	0	0.79085	1	1660	1660		58.246	9.6447	1	1804000	+		20706	28152	14303	14335	23684	23684					0.021168421743368526
GPQLPLSRPMD	11	Unmodified	_GPQLPLSRPMD_					0	0	0			REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.21484375	3	404.213141	1209.61759	1.7643	0.00071315	1.6577	0.00067007	3.422	0.0013832	404.2138230902251	28.188	0.87504	28.269	27.992	28.867	0.080811					46	20	4	0	0	0	0.97516	1	1574	1574		42.338	1.258	1	1915800	+		20707	28152	14303	14335	23685	23685					0.021168421743368526
GPQNPDSRARL	11	Unmodified	_GPQNPDSRARL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.214599609375	3	404.214421	1209.62143	0.23875	9.6508E-05	-0.26664	-0.00010778	-0.027882	-1.127E-05	404.2143563324048	28.554	0.88212	28.554	28.191	29.073	0					50	20	4	0	0	0	0.97516	1	1682	1682		42.338	3.5845	1	1942500			20708	1020	14304	14336	23686	23686					0.025006479924286396
GPQNYPLSR	9	Unmodified	_GPQNYPLSR_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1	REV__ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3138427734375	2	516.267073	1030.51959	-0.25834	-0.00013337	2.3385	0.0012073	2.0801	0.0010739	516.769985919211	98.016	0.37805	98.016	97.727	98.105	0					14	8	2	0	0	0	0.024438	1	12506	12506		36.447	0	1	144940	+		20709	27427	14305	14337	23687	23687					0.005554016406676965
GPQVMLISL	9	Unmodified	_GPQVMLISL_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2773742675781	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.85329	2	10005	10005;10065		35.618	1.4457	1	7158600			20710	3583	14306	14338	23688;23689	23688					0.05648186202256511
GPRAGGTRL	9	Unmodified	_GPRAGGTRL_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.75677490234375	2	442.756675	883.498798	0.3247	0.00014376	0.098057	4.3415E-05	0.42275	0.00018718	442.7566004919502	21.108	0.78396	21.18	20.762	21.546	0.071487					33	15	4	0	0	0	0.85329	1	582	582		35.618	5.1146	1	377350			20711	7197	14307	14339	23690	23690					0.05238856051653329
GPRAHRIQ	8	Unmodified	_GPRAHRIQ_					0	0	0			REV__ENST00000486254.3_1_2:159526166-159526295:+|nuORF	REV__ENST00000486254.3_1_2:159526166-159526295:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.7701416015625	2	467.770117	933.525681	0.51437	0.00024061	-0.55072	-0.00025761	-0.036349	-1.7003E-05	467.7697696656288	18.064	1.1801	17.932	17.514	18.694	-0.13147					52	23	4	0	0	0	0.97924	1	250	250		40.573	7.057	1	896940	+		20712	33580	14308	14340	23691	23691					0.05625964662840488
GPRATGPPM	9	Unmodified	_GPRATGPPM_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.22625732421875	2	442.226362	882.438172	-1.187	-0.00052493	1.4387	0.00063625	0.25173	0.00011132	442.22689645707544	29.755	1.0557	29.755	29.37	30.426	0					62	25	4	0	0	0	0.43973	1	1868	1868		63.306	4.5243	1	1437600	+		20713	20989	14309	14341	23692	23692					-0.007749973229351781
GPRATGPPM	9	Unmodified	_GPRATGPPM_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.226318359375	2	442.226362	882.438172	-0.36552	-0.00016164	0.65625	0.00029021	0.29074	0.00012857	442.22651469407805	29.729	1.132	29.732	29.276	30.408	0.0031357					61	27	4	0	0	0	0.43973	2	1846	1846;1859		63.306	11.779	1	1821700	+		20714	20989	14309	14341	23693;23694	23693					-0.007749973229351781
GPRATGPPM	9	Unmodified	_GPRATGPPM_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	442.226362	882.438172	-1.187	-0.00052493	1.4387	0.00063625	0.25173	0.00011132	442.22689645707544	29.755	1.0557	29.755	29.37	30.426	0	0.088727	0.00041835	NaN	63.306	62	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1437600	+		20715	20989	14309	14341							-0.007749973229351781
GPRATGPPM	9	Unmodified	_GPRATGPPM_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	442.226362	882.438172	-0.36552	-0.00016164	0.65625	0.00029021	0.29074	0.00012857	442.22651469407805	29.729	1.132	29.732	29.276	30.408	0.0031357	0.065538	-0.00027372	NaN	63.306	61	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1821700	+		20716	20989	14309	14341							-0.007749973229351781
GPRATGPPM	9	Unmodified	_GPRATGPPM_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	442.226362	882.438172	-0.51797	-0.00022906	0.91726	0.00040564	0.39929	0.00017658	442.22658691483906	29.434	1.0004	29.512	29.091	30.091	0.078344	-0.15426	-4.2869E-05	NaN	63.306	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1478600	+		20717	20989	14309	14341							-0.007749973229351781
GPRATGPPM	9	Oxidation (M)	_GPRATGPPM(Oxidation (M))_		GPRATGPPM(1)		GPRATGPPM(88)	0	0	1			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.22381591796875	2	450.22382	898.433086	-0.14099	-6.3475E-05	0.38847	0.0001749	0.24748	0.00011142	450.22384124508926	23.62	3.5535	23.696	21.737	25.29	0.076241					167	78	3	0	0	0	0.20967	3	924	901;910;924		87.754	24.776	1	772290	+		20718	20989	14309	14342	23695;23696;23697	23697		643			-0.02019301185544009
GPRATKHAL	9	Unmodified	_GPRATKHAL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.7801818847656	2	475.780151	949.545748	4.3797	0.0020838	-4.3046	-0.002048	0.075082	3.5723E-05	475.7779346076971	18.364	0.24337	18.427	18.307	18.55	0.063307					8	4	2	0	0	0	0.99726	1	246	246		20.947	1.587	1	44679			20719	8829	14310	14343	23698	23698					0.06895715602797736
GPRATNIR	8	Unmodified	_GPRATNIR_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.7567443847656	2	442.756675	883.498798	-0.20827	-9.2212E-05	0.36746	0.0001627	0.15919	7.0484E-05	442.7567721603265	21.238	0.73259	21.148	20.766	21.499	-0.090094					36	14	4	0	0	0	0.99042	1	623	623		38.806	1.647	1	427040	+		20720	22635	14311	14344	23699	23699					0.052388560516646976
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2958984375	2	537.296165	1072.57778	-1.443	-0.00077534	0.30136	0.00016192	-1.1417	-0.00061342	537.2963379348083	37.75	1.0038	37.75	37.195	38.199	0					85	28	4	0	0	0	0.28753	3	3101	3089;3101;3128		77.318	20.597	1	14350000			20721	8131	14312	14345	23700;23701;23702	23701					0.044390832859335205
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.2957763671875	2	537.296165	1072.57778	-1.2376	-0.00066494	0.14854	7.981E-05	-1.089	-0.00058513	537.2962602569435	37.618	1.2591	37.555	37.014	38.273	-0.063389					105	35	5	0	0	0	0.32064	3	3034	3034;3069;3081		72.879	23.343	1	12497000			20722	8131	14312	14345	23703;23704;23705	23703					0.044390832859335205
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2958984375	2	537.296165	1072.57778	-1.4748	-0.00079243	0.17328	9.3102E-05	-1.3016	-0.00069933	537.2962837343906	37.838	1.4301	37.871	37.226	38.656	0.032269					116	39	5	0	0	0	0.32811	5	3036	3025;3036;3046;3058;3071		71.877	21.853	1	12223000			20723	8131	14312	14345	23706;23707;23708;23709;23710	23707					0.044390832859335205
GPRGPKGDT	9	Unmodified	_GPRGPKGDT_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.73504638671875	2	442.732866	883.451179	2.0725	0.00091755	2.5922	0.0011477	4.6647	0.0020652	442.7338704574741	23.459	1.7702	23.268	22.942	24.713	-0.19117					121	40	6	0	0	0	0.70156	1	934	934		45.972	3.4978	1	7639300			20724	10324	14313	14346	23711	23711					0.0047915706081766984
GPRGRTLP	8	Unmodified	_GPRGRTLP_					0	0	0			REV__ENST00000604157.1_1_4:153457505-153457595:+|nuORF	REV__ENST00000604157.1_1_4:153457505-153457595:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2537536621094	2	427.253769	852.492984	-0.63751	-0.00027238	0.23833	0.00010183	-0.39919	-0.00017055	427.2539474170651	23.379	2.0397	23.379	22.479	24.518	0					128	46	5	0	0	0	0.93274	1	893	893		47.916	3.7988	1	16896000	+		20725	35904	14314	14347	23712	23712					0.0608375753998871
GPRKGGRVI	9	Unmodified	_GPRKGGRVI_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2958984375	2	470.295968	938.577383	2.5609	0.0012044	-3.2265	-0.0015174	-0.66562	-0.00031304	470.2945978495062	18.552	1.1784	18.552	18.284	19.463	0					56	23	4	0	0	0	0.72875	1	305	305		44.117	8.4985	1	4513700			20726	2627	14315	14348	23713	23713					0.10563708356744428
GPRKGGRVI	9	Unmodified	_GPRKGGRVI_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2959289550781	2	470.295968	938.577383	0.42949	0.00020199	-0.99375	-0.00046736	-0.56426	-0.00026537	470.2956050534098	18.752	1.227	18.621	18.352	19.579	-0.13147					58	24	4	0	0	0	0.59099	2	325	313;325		53.351	5.4358	1	4297100			20727	2627	14315	14348	23714;23715	23715					0.10563708356744428
GPRKGTHLL	9	Unmodified	_GPRKGTHLL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;ENST00000585230.1_1_17:27014435-27015237:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.79571533203125	2	489.795801	977.577048	-1.4057	-0.00068851	1.3076	0.00064047	-0.09807	-4.8034E-05	489.7963349901037	22.074	1.1454	22.148	21.832	22.978	0.073954					55	23	4	0	0	0	0.6238	1	701	701		51.193	6.6616	1	982240			20728	2963	14316	14349	23716	23716					0.08736288636896461
GPRKPGVGAT	10	Unmodified	_GPRKPGVGAT_					0	0	0		ENST00000407418.7_1_22:39261880-39262189:-|nuORF	ENST00000407418.7_1_22:39261880-39262189:-|nuORF	ENST00000407418.7_1_22:39261880-39262189:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2958984375	2	470.272158	938.529764	4.4123	0.002075	-4.3937	-0.0020663	0.018561	8.7289E-06	470.26982845281026	18.546	0.34404	18.609	18.452	18.796	0.063307					13	6	3	0	0	0	0.03519	1	286	286		47.657	31.184	1	41255			20729	13746	14317	14350	23717	23717					0.05804009365908769
GPRNEELV	8	Unmodified	_GPRNEELV_					0	0	0		ENST00000521885.5_1_8:82627332-82644598:-|nuORF	ENST00000521885.5_1_8:82627332-82644598:-|nuORF	ENST00000521885.5_1_8:82627332-82644598:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.243408203125	2	457.240524	912.466495	4.648	0.0021253	0.2333	0.00010668	4.8813	0.0022319	457.24072289202076	17.505	0.29505	17.254	17.076	17.371	-0.25049					8	5	2	0	0	0	1.0574	1	168	168		14.664	0	1	19608			20730	16016	14318	14351	23718	23718					0.006760238579886391
GPRNEELV	8	Unmodified	_GPRNEELV_					0	0	0		ENST00000521885.5_1_8:82627332-82644598:-|nuORF	ENST00000521885.5_1_8:82627332-82644598:-|nuORF	ENST00000521885.5_1_8:82627332-82644598:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.240524	912.466495	3.8701	0.0017696	4.4097	0.0020163	8.2799	0.0037859	457.2424309868348	17.226	0.29704	17.226	17.102	17.399	0	-0.047882	0.0018208	NaN	14.664	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26090			20731	16016	14318	14351							0.006760238579886391
GPRNEELV	8	Unmodified	_GPRNEELV_					0	0	0		ENST00000521885.5_1_8:82627332-82644598:-|nuORF	ENST00000521885.5_1_8:82627332-82644598:-|nuORF	ENST00000521885.5_1_8:82627332-82644598:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.240524	912.466495	5.5783	0.0025506	2.6944	0.001232	8.2728	0.0037826	457.24167157004274	17.28	0.36023	17.34	17.209	17.569	0.06036	0.066883	0.00025216	NaN	14.664	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33219			20732	16016	14318	14351							0.006760238579886391
GPRPPPPPP	9	Unmodified	_GPRPPPPPP_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.25830078125	2	456.25852	910.502486	-0.36043	-0.00016445	-0.15612	-7.123E-05	-0.51655	-0.00023568	456.25850296783176	32.466	3.7606	32.477	31.214	34.975	0.011795					259	97	3	0	0	0	0.20304	1	2337	2337		88.643	3.2834	1	19003000			20733	6111	14319	14352	23719	23719					0.04365525825505756
GPRRGDPN	8	Unmodified	_GPRRGDPN_					0	0	0		ENST00000469420.1_1_22:39267486-39267531:-|nuORF	ENST00000469420.1_1_22:39267486-39267531:-|nuORF	ENST00000469420.1_1_22:39267486-39267531:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.78033447265625	2	434.722833	867.431112	-0.63397	-0.0002756	-4.1801	-0.0018172	-4.8141	-0.0020928	434.7209433378048	39.046	0.57819	39.07	38.807	39.385	0.023727					27	15	2	0	0	0	0.027866	1	3224	3224		29.15	18.884	1	920890			20734	14903	14320	14353	23720	23720					-0.00790593879150947
GPRSQDPSL	9	Unmodified	_GPRSQDPSL_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7440185546875	2	478.743431	955.472308	-0.65544	-0.00031379	0.60155	0.00028799	-0.053881	-2.5795E-05	478.7435390917275	30.002	0.98324	30.002	29.692	30.675	0					66	23	4	0	0	0	0.31037	1	1875	1875		74.255	0.28031	1	6555800			20735	5658	14321	14354	23721	23721					-0.007208776303286868
GPRSQDPSL	9	Unmodified	_GPRSQDPSL_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.V199*|1|0.28|ENSG00000143514|chr1:223804229-223804229|T/-|frameshift_variant	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7436218261719	2	478.743431	955.472308	-0.77592	-0.00037147	0.91841	0.00043968	0.14249	6.8214E-05	478.74368549118896	29.594	1.0154	29.672	29.284	30.3	0.078344					72	24	4	0	0	0	0.23085	1	1800	1800		84.916	2.675	1	6160700			20736	5658	14321	14354	23722	23722					-0.007208776303286868
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.8011169433594	2	492.801083	983.587613	-0.79003	-0.00038933	-0.12333	-6.0775E-05	-0.91336	-0.0004501	492.80102220493694	36.178	1.6179	36.178	35.687	37.305	0					102	43	5	0	0	0	0.50848	3	2834	2834;2844;2855		58.782	18.004	1	21568000			20737	9787	14322	14355	23723;23724;23725	23723					0.09516271291329303
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.8009948730469	2	492.801083	983.587613	-1.1104	-0.0005472	0.25036	0.00012338	-0.86003	-0.00042383	492.80119252309186	36.024	1.4739	35.981	35.488	36.962	-0.042454					96	39	5	0	0	0	0.35646	3	2805	2805;2815;2827		68.787	20.871	1	18457000			20738	9787	14322	14355	23726;23727;23728	23726					0.09516271291329303
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.80096435546875	2	492.801083	983.587613	-0.57723	-0.00028446	-0.30169	-0.00014867	-0.87892	-0.00043313	492.80092642110367	36.164	1.5449	36.202	35.61	37.155	0.03804					96	41	4	0	0	0	0.4752	5	2783	2774;2783;2794;2806;2820		60.972	20.194	1	16397000			20739	9787	14322	14355	23729;23730;23731;23732;23733	23730					0.09516271291329303
GPRSTASDL	9	Unmodified	_GPRSTASDL_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2303161621094	2	452.230156	902.445759	-0.26863	-0.00012148	0.082502	3.731E-05	-0.18613	-8.4172E-05	452.23014342301957	26.366	0.57337	26.343	25.954	26.527	-0.023088					24	13	2	0	0	0	0.17822	1	1317	1317		93.195	1.0048	1	3350400			20740	3577	14323	14356	23734	23734					-0.009365665216819252
GPRSTASDL	9	Unmodified	_GPRSTASDL_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2303161621094	2	452.230156	902.445759	0.22669	0.00010251	-0.34661	-0.00015675	-0.11992	-5.4234E-05	452.22992100141795	26.03	0.66526	26.111	25.707	26.372	0.081293					46	15	4	0	0	0	0.12602	1	1242	1242		104.75	1.9732	1	3470200			20741	3577	14323	14356	23735	23735					-0.009365665216819252
GPRTNLKGQ	9	Unmodified	_GPRTNLKGQ_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2905578613281	2	485.775065	969.535577	-0.89338	-0.00043398	0.65729	0.00031929	-0.23609	-0.00011469	485.77547267908886	27.859	0.32894	27.94	27.795	28.124	0.081293					10	7	2	0	0	0	0.024288	1	1502	1502		71.877	20.685	1	69889	+		20742	26994	14324	14357	23736	23736					0.04959107877573388
GPSCGHGRPGR	11	Carbamidomethyl (C)	_GPSC(Carbamidomethyl (C))GHGRPGR_	GPSC(1)GHGRPGR		GPSC(55)GHGRPGR		0	1	0			REV__ENST00000376146.8_1_6:31526144-31526270:+|nuORF	REV__ENST00000376146.8_1_6:31526144-31526270:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2681274414062	2	569.270155	1136.52576	-0.027525	-1.5669E-05	-4.3171	-0.0024576	-4.3446	-0.0024733	569.2676179559305	24.453	1.5092	24.238	23.733	25.243	-0.2151					90	34	4	0	0	0	0.849	1	1028	1028		54.722	7.065	1	2498100	+		20743	31350	14325	14358	23737	23737	412				-0.03704403399478906
GPSDMFPA	8	Unmodified	_GPSDMFPA_					0	0	0		ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.17584228515625	2	411.178546	820.34254	0.26006	0.00010693	-1.5172	-0.00062382	-1.2571	-0.00051689	411.1778000413482	92.008	0.59451	91.867	91.616	92.211	-0.14131					13	13	2	0	0	0	0.027866	1	11275	11275		28.254	0	1	36844			20744	4063	14326	14359	23738	23738					-0.0748177023383505
GPSGARGRGR	10	Unmodified	_GPSGARGRGR_					0	0	0			REV__ENST00000425420.2_19:33792364-33793425:-|nuORF	REV__ENST00000425420.2_19:33792364-33793425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2908935546875	2	485.768106	969.521659	-1.0256	-0.0004982	-1.7149	-0.00083304	-2.7405	-0.0013312	485.7669239640092	25.215	0.35508	25.181	25.037	25.392	-0.034395					11	8	2	0	0	0	0.03519	1	1184	1184		62.107	32.937	1	51356	+		20745	32253	14327	14360	23739	23739					0.035678751691420985
GPSGARGRGR	10	Unmodified	_GPSGARGRGR_					0	0	0			REV__ENST00000425420.2_19:33792364-33793425:-|nuORF	REV__ENST00000425420.2_19:33792364-33793425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.290771484375	2	485.768106	969.521659	-0.17127	-8.3199E-05	-2.5293	-0.0012286	-2.7005	-0.0013118	485.7665832421074	25.176	0.37038	25.257	25.006	25.377	0.08009					15	8	3	0	0	0	0.03519	1	1127	1127		69.628	25.511	1	70189	+		20746	32253	14327	14360	23740	23740					0.035678751691420985
GPSGEGDPRAE	11	Unmodified	_GPSGEGDPRAE_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.30615234375	2	536.238709	1070.46287	-0.78338	-0.00042008	-2.7285	-0.0014631	-3.5119	-0.0018832	536.2366390733187	48.085	0.33107	47.987	47.855	48.186	-0.097553					12	8	2	0	0	0	0.024731	1	4746	4746		35.152	8.3559	1	127710	+		20747	27880	14328	14361	23741	23741					-0.06954690706538713
GPSGGRGAAL	10	Unmodified	_GPSGGRGAAL_					0	0	0		ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.7280578613281	2	421.727584	841.440614	-0.78066	-0.00032923	1.3575	0.00057252	0.57688	0.00024329	421.7281488388295	25.266	1.4132	25.266	24.83	26.243	0					85	33	5	0	0	0	0.21865	5	1193	1161;1170;1181;1193;1205		118.74	46.866	1	12162000			20748	12223	14329	14362	23742;23743;23744;23745;23746	23745					0.013551744063761362
GPSGGRGAAL	10	Unmodified	_GPSGGRGAAL_					0	0	0		ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	421.7277526855469	2	421.727584	841.440614	-0.89657	-0.00037811	1.4434	0.00060872	0.54682	0.00023061	421.7282029525668	25.326	1.8259	25.292	24.815	26.641	-0.034397					100	43	6	0	0	0	0.21865	5	1166	1156;1166;1177;1189;1202		118.74	51.249	1	12232000			20749	12223	14329	14362	23747;23748;23749;23750;23751	23748					0.013551744063761362
GPSGGRGAAL	10	Unmodified	_GPSGGRGAAL_					0	0	0		ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	421.7279052734375	2	421.727584	841.440614	0.43978	0.00018547	-0.065409	-2.7585E-05	0.37437	0.00015788	421.72741839294065	25.076	0.72058	25.156	24.779	25.499	0.08009					31	16	3	0	0	0	0.31896	2	1100	1100;1111		107.01	35.63	1	1477600			20750	12223	14329	14362	23752;23753	23752					0.013551744063761362
GPSGLRPAL	9	Unmodified	_GPSGLRPAL_					0	0	0		ENST00000378712.5_1_1:1564568-1565036:+|nuORF;ENST00000487053.5_1_1:1564568-1565033:+|nuORF	ENST00000378712.5_1_1:1564568-1565036:+|nuORF	ENST00000378712.5_1_1:1564568-1565036:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.2558898925781	2	434.255977	866.497401	-0.81043	-0.00035193	0.62317	0.00027062	-0.18726	-8.1318E-05	434.25613017460046	44.104	1.0623	44.104	43.8	44.862	0					70	30	4	0	0	0	0.11092	2	4171	4171;4195		108.09	17.07	1	9764100			20751	13247	14330	14363	23754;23755	23754					0.058812219628862294
GPSGLRPAL	9	Unmodified	_GPSGLRPAL_					0	0	0		ENST00000378712.5_1_1:1564568-1565036:+|nuORF;ENST00000487053.5_1_1:1564568-1565033:+|nuORF	ENST00000378712.5_1_1:1564568-1565036:+|nuORF	ENST00000378712.5_1_1:1564568-1565036:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2562561035156	2	434.255977	866.497401	-0.95427	-0.0004144	0.89292	0.00038776	-0.061348	-2.6641E-05	434.25623655064857	44.261	1.5358	44.117	43.781	45.316	-0.14471					95	44	4	0	0	0	0.16468	2	4192	4192;4205		96.19	8.4361	1	8901500			20752	13247	14330	14363	23756;23757	23756					0.058812219628862294
GPSGLRPAL	9	Unmodified	_GPSGLRPAL_					0	0	0		ENST00000378712.5_1_1:1564568-1565036:+|nuORF;ENST00000487053.5_1_1:1564568-1565033:+|nuORF	ENST00000378712.5_1_1:1564568-1565036:+|nuORF	ENST00000378712.5_1_1:1564568-1565036:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2559509277344	2	434.255977	866.497401	0.0067838	2.9459E-06	-0.05919	-2.5704E-05	-0.052407	-2.2758E-05	434.25582851150483	44.145	1.07	44.182	43.853	44.923	0.0369					68	30	4	0	0	0	0.11092	3	4116	4116;4128;4140		108.09	16.739	1	8828500			20753	13247	14330	14363	23758;23759;23760	23758					0.058812219628862294
GPSKPDLR	8	Unmodified	_GPSKPDLR_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2187805175781	2	435.245609	868.476666	-0.6278	-0.00027325	0.36272	0.00015787	-0.26509	-0.00011538	435.24532273408533	30.104	0.62274	30.178	29.838	30.461	0.074316					21	14	2	0	0	0	0.027866	1	1854	1854		40.778	29.913	1	81011	+		20754	27387	14331	14364	23761	23761					0.037166315832337204
GPSKPKKSKS	10	Unmodified	_GPSKPKKSKS_					0	0	0		nc|ENSG00000169696|Q9BZE9-4|ASPSCR1;nc|ENSG00000169696|Q9BZE9-3|ASPSCR1;ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.801025390625	2	522.314023	1042.61349	-0.76498	-0.00039956	0.042507	2.2202E-05	-0.72247	-0.00037736	522.3142199968719	19.905	1.3432	19.905	19.556	20.9	0					64	27	5	0	0	0	0.03519	1	449	449		51.193	17.677	1	1022900			20755	7967	14332	14365	23762	23762					0.0938912074293512
GPSLGLSRLL	10	Unmodified	_GPSLGLSRLL_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8127746582031	2	506.811116	1011.60768	0.53467	0.00027098	-1.3459	-0.00068214	-0.81128	-0.00041116	506.81053479143134	54.415	1.2551	54.513	54.077	55.332	0.098011					114	35	5	0	0	0	0.37169	1	5914	5914		101.6	2.2258	1	38735000	+		20756	27896	14333	14366	23763	23763					0.10234022231293238
GPSLLYQQKL	10	Unmodified	_GPSLLYQQKL_					0	0	0			REV__ENST00000454783.5_1_6:31539934-31540036:+|nuORF	REV__ENST00000454783.5_1_6:31539934-31540036:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.8305053710938	2	573.829506	1145.64446	-0.40906	-0.00023473	1.3149	0.00075453	0.90584	0.0005198	573.8302072691919	73.677	1.2303	73.677	73.362	74.593	0					49	29	2	0	0	0	0.74632	1	8990	8990		64.207	5.9773	1	2930200	+		20757	32770	14334	14367	23764	23764					0.07746274057171831
GPSLLYQQKL	10	Unmodified	_GPSLLYQQKL_					0	0	0			REV__ENST00000454783.5_1_6:31539934-31540036:+|nuORF	REV__ENST00000454783.5_1_6:31539934-31540036:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.8297119140625	2	573.829506	1145.64446	-0.90257	-0.00051792	1.7521	0.0010054	0.84951	0.00048747	573.830417599519	73.677	1.2797	73.687	73.327	74.607	0.0096512					60	30	3	0	0	0	0.52982	1	8915	8915		84.916	8.1414	1	2681900	+		20758	32770	14334	14367	23765	23765					0.07746274057171831
GPSLRGPAL	9	Unmodified	_GPSLRGPAL_					0	0	0		ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2;nc|ENSG00000182010|Q8IZC4-3|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.25567626953125	2	434.255977	866.497401	-0.81043	-0.00035193	0.62317	0.00027062	-0.18726	-8.1318E-05	434.25613017460046	44.104	1.0623	44.104	43.8	44.862	0					70	30	4	0	0	0	0.15029	1	4183	4183		99.375	3.1845	1	9764100			20759	9090	14335	14368	23766	23766					0.05881221962908967
GPSLRGPAL	9	Unmodified	_GPSLRGPAL_					0	0	0		ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2;nc|ENSG00000182010|Q8IZC4-3|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2566833496094	2	434.255977	866.497401	-0.95427	-0.0004144	0.89292	0.00038776	-0.061348	-2.6641E-05	434.25623655064857	44.261	1.5358	44.117	43.781	45.316	-0.14471					95	44	4	0	0	0	0.096521	1	4179	4179		111.65	0	1	8901500			20760	9090	14335	14368	23767	23767					0.05881221962908967
GPSLRSTL	8	Unmodified	_GPSLRSTL_					0	0	0		ENST00000407418.7_1_22:39260685-39261309:-|nuORF	ENST00000407418.7_1_22:39260685-39261309:-|nuORF	ENST00000407418.7_1_22:39260685-39261309:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.5339660644531	2	415.74016	829.465767	-0.097706	-4.062E-05	1.3894	0.00057765	1.2917	0.00053703	415.73985818612323	20.009	0.33515	19.841	19.62	19.955	-0.16774					8	6	2	0	0	0	0.027866	1	474	474		31.955	11.473	1	9220.2			20761	13745	14336	14369	23768	23768					0.044212292089468974
GPSLRSTL	8	Unmodified	_GPSLRSTL_					0	0	0		ENST00000407418.7_1_22:39260685-39261309:-|nuORF	ENST00000407418.7_1_22:39260685-39261309:-|nuORF	ENST00000407418.7_1_22:39260685-39261309:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	415.74016	829.465767	0.85028	0.00035349	1.6207	0.0006738	2.471	0.0010273	415.7403024057338	20.391	0.62999	20.195	19.755	20.385	-0.19577	0.17704	0.00010046	NaN	24.203	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20413			20762	13745	14336	14369							0.044212292089468974
GPSMFDGYLI	10	Unmodified	_GPSMFDGYLI_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2618408203125	2	550.260068	1098.50558	-1.3532	-0.0007446	4.2645	0.0023466	2.9114	0.001602	550.2622884144965	91.356	1.0903	91.356	91.011	92.101	0					64	25	3	0	0	0	0.62431	1	11547	11547		74.255	2.3776	1	4093800	+		20763	22148	14337	14370	23769	23769					-0.0397301190264443
GPSMFDGYLI	10	Unmodified	_GPSMFDGYLI_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2615966796875	2	550.260068	1098.50558	-0.039856	-2.1931E-05	2.8564	0.0015718	2.8165	0.0015498	550.2615259232589	91.344	1.0038	91.355	91.074	92.077	0.011276					60	23	3	0	0	0	0.62431	1	11483	11483		74.255	10.048	1	3694700	+		20764	22148	14337	14370	23770	23770					-0.0397301190264443
GPSMFDGYLI	10	Unmodified	_GPSMFDGYLI_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2606201171875	2	550.260068	1098.50558	0.1473	8.1055E-05	2.8742	0.0015816	3.0215	0.0016626	550.2614914202358	91.431	1.3494	91.291	90.943	92.292	-0.13942					75	31	3	0	0	0	0.74632	1	11210	11210		64.207	10.856	1	2815800	+		20765	22148	14337	14370	23771	23771					-0.0397301190264443
GPSPTRTSLRG	11	Unmodified	_GPSPTRTSLRG_					0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.81201171875	2	564.809636	1127.60472	3.9116	0.0022093	2.4665	0.0013931	6.3782	0.0036025	564.8109499272249	17.844	0.84043	17.594	17.276	18.116	-0.25049					21	16	2	0	0	0	0.97926	1	203	203		41.427	11.109	1	170160	+		20766	27790	14338	14371	23772	23772					0.04602147106470511
GPSQSQRTPPR	11	Unmodified	_GPSQSQRTPPR_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.21466064453125	3	404.214421	1209.62143	0.23875	9.6508E-05	-0.26664	-0.00010778	-0.027882	-1.127E-05	404.2143563324048	28.554	0.88212	28.554	28.191	29.073	0					50	20	4	0	0	0	1.0074	1	1670	1670		35.178	1.0057	1	1942500	+		20767	36496	14339	14372	23773	23773					0.025006479924059022
GPSRNVLLL	9	Unmodified	_GPSRNVLLL_					0	0	0			REV__ENST00000294161.10_1_11:62495660-62495819:+|nuORF	REV__ENST00000294161.10_1_11:62495660-62495819:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7984619140625	2	484.798009	967.581465	1.4645	0.00071001	-2.4093	-0.001168	-0.94471	-0.00045799	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.4752	1	6682	6682		60.972	0	1	119110000	+		20768	29964	14340	14373	23774	23774					0.09637753059814713
GPSRSELGGD	10	Unmodified	_GPSRSELGGD_					0	0	0			REV__ENST00000419490.5_1_1:21112779-21113076:-|nuORF	REV__ENST00000419490.5_1_1:21112779-21113076:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.77850341796875	2	487.73052	973.446488	-1.1462	-0.00055906	4.0033	0.0019525	2.857	0.0013935	487.7323890711722	62.725	0.48645	62.486	62.419	62.905	-0.23926					20	11	2	0	0	0	0.03519	1	7291	7291		21.686	0	1	844510	+		20769	32141	14341	14374	23775	23775					-0.04129771872612764
GPSSGWGLLVP	11	Unmodified	_GPSSGWGLLVP_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|368|3|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|368|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8670654296875	2	535.287474	1068.5604	1.1459	0.00061339	1.8109	0.00096937	2.9568	0.0015828	535.2883391950487	17.237	0.45084	17.083	16.957	17.408	-0.15403					13	8	2	0	0	0	0.024788	1	191	191		14.137	0	1	65757	+		20770	36276	14342	14375	23776	23776					0.028857429603021956
GPSSGWGLLVP	11	Unmodified	_GPSSGWGLLVP_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|368|3|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|368|3|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.287474	1068.5604	-0.58114	-0.00031108	3.7655	0.0020156	3.1843	0.0017045	535.2893684438648	17.196	0.35306	16.989	16.813	17.166	-0.20669	-0.034538	0.0023555	NaN	14.137	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57230	+		20771	36276	14342	14375							0.028857429603021956
GPSTFLPE	8	Unmodified	_GPSTFLPE_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.P813Lfs*22|1|0.21|ENSG00000214655|chr10:73793708-73793708|C/-|frameshift_variant;ENST00000431225.5_1_10:75551812-75554405:+|nuORF	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.72705078125	2	424.213443	846.412334	-0.37689	-0.00015988	-3.8907	-0.0016505	-4.2676	-0.0018104	424.2116956194448	34.802	0.86843	34.852	34.404	35.273	0.050255					59	22	3	0	0	0	0.027866	1	2518	2518		30.504	0	1	1197900			20772	10562	14343	14376	23777	23777					-0.017015682935721088
GPSVKAIYPC	10	Unmodified	_GPSVKAIYPC_					0	0	0		ENST00000377776.7_1_7:152551755-152551929:+|nuORF	ENST00000377776.7_1_7:152551755-152551929:+|nuORF	ENST00000377776.7_1_7:152551755-152551929:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.3243408203125	2	517.770603	1033.52665	-0.18434	-9.5447E-05	-1.3669	-0.00070776	-1.5513	-0.0008032	517.7687318977053	41.137	0.174	41.137	41.051	41.225	0					6	4	2	0	0	0	0.03519	1	3681	3681		31.53	3.6476	1	49831			20773	13214	14344	14377	23778	23778					0.011229981968654101
GPTGSGGRH	9	Unmodified	_GPTGSGGRH_					0	0	0			REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.26910400390625	2	413.201733	824.388913	-0.035036	-1.4477E-05	-4.1794	-0.0017269	-4.2144	-0.0017414	413.1996680480008	28.4	0.20987	28.396	28.33	28.54	-0.0042019					5	4	2	0	0	0	0.024381	1	1639	1639		55.504	30.054	1	27210	+		20774	30496	14345	14378	23779	23779					-0.030305692875344903
GPTPPPPALHQ	11	Unmodified	_GPTPPPPALHQ_					0	0	0			REV__ENST00000531879.5_1_11:46367016-46400221:+|nuORF	REV__ENST00000531879.5_1_11:46367016-46400221:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	556.2992553710938	2	556.298373	1110.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.1	1	110.97	110.47	111.47	-0.12624								0	0	0	1.5436	1	13636	13636		13.454	0.49486	1		+		20775	24653	14346	14379	23780	23780					0.031325477088330445
GPTRLRVR	8	Unmodified	_GPTRLRVR_					0	0	0			REV__ENST00000520717.1_1_8:121824076-121824890:-|nuORF	REV__ENST00000520717.1_1_8:121824076-121824890:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7853698730469	2	477.801417	953.588282	-0.86277	-0.00041223	4.3916	0.0020983	3.5289	0.0016861	477.8033641984418	91.06	0.7452	90.912	90.651	91.396	-0.1487					29	17	3	0	0	0	0.027866	1	11182	11182		40.778	3.6191	1	480300	+		20776	34224	14347	14380	23781	23781					0.10963110731029246
GPTRVPARG	9	Unmodified	_GPTRVPARG_					0	0	0			REV__ENST00000395900.1_1_11:32457375-32459526:+|nuORF	REV__ENST00000395900.1_1_11:32457375-32459526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7540283203125	2	455.764501	909.514448	-0.15421	-7.0283E-05	0.33895	0.00015448	0.18474	8.4198E-05	455.7644574318764	22.836	0.86604	22.761	22.506	23.372	-0.075296					27	19	2	0	0	0	0.02435	1	812	812		34.173	0	1	643390	+		20777	31720	14348	14381	23782	23782					0.056071425687036935
GPVARPLL	8	Unmodified	_GPVARPLL_					0	0	0			REV__ENST00000441788.6_1_19:3532623-3534429:+|nuORF	REV__ENST00000441788.6_1_19:3532623-3534429:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	411.76336669921875	2	411.763438	821.512323	-0.013442	-5.5348E-06	0.61632	0.00025378	0.60288	0.00024825	411.76346419552954	48.559	1.1649	48.407	48.125	49.29	-0.15277					82	32	4	0	0	0	0.85409	1	4937	4937		54.765	0	1	2870300	+		20778	32551	14349	14382	23783	23783					0.0944271383089017
GPVCLSQQLS	10	Unmodified	_GPVCLSQQLS_					0	0	0		ENST00000531239.2_1_11:67120500-67120993:-|nuORF;ENST00000534515.1_1_11:67120768-67120993:-|nuORF	ENST00000531239.2_1_11:67120500-67120993:-|nuORF	ENST00000531239.2_1_11:67120500-67120993:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8009033203125	2	516.263142	1030.51173	1.1146	0.00057543	-0.30426	-0.00015708	0.81034	0.00041835	516.2628373507724	37.138	0.45905	37.138	36.846	37.305	0					17	11	2	0	0	0	0.03519	1	2965	2965		47.657	9.8458	1	215630			20779	16253	14350	14383	23784	23784					-0.0023049367111980246
GPVESILAHN	10	Unmodified	_GPVESILAHN_					0	0	0			REV__ENST00000463934.1_1_22:39475113-39475338:+|nuORF	REV__ENST00000463934.1_1_22:39475113-39475338:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7698364257812	2	518.774731	1035.53491	-0.74514	-0.00038656	4.0487	0.0021004	3.3036	0.0017138	518.7766009864824	21.399	2.216	21.471	20.713	22.929	0.071489					106	45	4	0	0	0	0.03519	1	696	696		79.713	15.505	1	222210	+		20780	32953	14351	14384	23785	23785					0.018562684378366612
GPVGGLRKAFS	11	Unmodified	_GPVGGLRKAFS_					0	0	0			REV__ENST00000340093.7_1_19:44174331-44174400:-|nuORF	REV__ENST00000340093.7_1_19:44174331-44174400:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.8159790039062	2	544.81419	1087.61383	3.9916	0.0021747	-1.0616	-0.00057835	2.93	0.0015963	544.8136915403146	17.899	0.66283	17.96	17.786	18.449	0.06036					18	14	2	0	0	0	1.0392	1	187	187		28.081	0.19925	1	78060	+		20781	30609	14352	14385	23786	23786					0.07352540462784418
GPVHLPCR	8	Unmodified	_GPVHLPCR_					0	0	0		nc|ENSG00000105479|Q96M63-5|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF	nc|ENSG00000105479|Q96M63-5|ODAD1	nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.75146484375	2	439.736897	877.459241	-0.97027	-0.00042666	-1.64	-0.00072115	-2.6102	-0.0011478	439.7358885768392	20.539	0.23582	20.539	20.42	20.656	0					5	4	2	0	0	0	0.027866	1	548	548		37.028	0	1	7056.4			20782	15024	14353	14386	23787	23787					0.01561012776573989
GPVKRKAAS	9	Unmodified	_GPVKRKAAS_					0	0	0		ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2824401855469	2	457.282526	912.550499	0.076772	3.5106E-05	-0.1043	-4.7694E-05	-0.027527	-1.2588E-05	457.28231100748695	34.732	0.72501	34.514	34.185	34.91	-0.21806					43	17	4	0	0	0	0.97455	1	2593	2593		25.574	0.12388	1	2224900			20783	16007	14354	14387	23788	23788					0.09072599745547905
GPVLGKRR	8	Unmodified	_GPVLGKRR_					0	0	0			REV__ENSG00000135093|ENST00000257548|USP30	REV__ENSG00000135093|ENST00000257548|USP30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.785400390625	2	441.785236	881.555919	2.186	0.00096573	-1.7509	-0.00077352	0.43507	0.00019221	441.7842938662644	18.711	0.54016	18.711	18.382	18.922	0					26	10	3	0	0	0	1.0572	1	324	324		28.254	1.4582	1	123360	+		20784	23510	14355	14388	23789	23789					0.11040323328029444
GPVLGKRR	8	Unmodified	_GPVLGKRR_					0	0	0			REV__ENSG00000135093|ENST00000257548|USP30	REV__ENSG00000135093|ENST00000257548|USP30	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7853698730469	2	441.785236	881.555919	3.6137	0.0015965	-3.2636	-0.0014418	0.35008	0.00015466	441.7836410489759	18.901	0.63931	18.965	18.599	19.239	0.063307					29	12	3	0	0	0	0.94001	2	302	302;314		46.766	9.738	1	141870	+		20785	23510	14355	14388	23790;23791	23790					0.11040323328029444
GPVLTLGLL	9	Unmodified	_GPVLTLGLL_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7880554199219	2	441.786579	881.558604	-0.75125	-0.00033189	3.7526	0.0016578	3.0013	0.0013259	441.788141210744	40.907	2.019	40.676	40.158	42.177	-0.23029					183	54	5	0	0	0	0.78069	1	3516	3516		40.573	1.5511	1	21377000			20786	4945	14356	14389	23792	23792					0.11308733942325944
GPVPSVFPL	9	Unmodified	_GPVPSVFPL_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.282470703125	2	456.763104	911.511654	0.09058	4.1374E-05	0.35345	0.00016144	0.44403	0.00020282	456.763731274968	34.745	0.32241	34.529	34.307	34.63	-0.21555					11	7	2	0	0	0	0.024293	1	2581	2581		25.45	13.243	1	54385			20787	10973	14357	14390	23793	23793					0.052358743911895544
GPVQEMPLL	9	Unmodified	_GPVQEMPLL_					0	0	0		ENST00000527780.5_1_19:50840286-50840625:-|nuORF;ENST00000525179.1_1_19:50840577-50840625:-|nuORF;ENST00000534789.5_1_19:50838046-50840625:-|nuORF	ENST00000527780.5_1_19:50840286-50840625:-|nuORF	ENST00000527780.5_1_19:50840286-50840625:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2668762207031	2	492.265153	982.515753	-0.23364	-0.00011501	4.3872	0.0021597	4.1536	0.0020447	492.2669179923295	37.045	0.99952	37.078	36.678	37.677	0.032269					73	25	4	0	0	0	0.18915	1	2922	2922		90.777	14.003	1	11695000			20788	16162	14358	14391	23794	23794					0.02379595822594638
GPVRKHFI	8	Unmodified	_GPVRKHFI_					0	0	0		ENST00000308234.11_1_5:98129683-98129833:+|nuORF	ENST00000308234.11_1_5:98129683-98129833:+|nuORF	ENST00000308234.11_1_5:98129683-98129833:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2908935546875	2	477.287611	952.56067	3.2127	0.0015334	4.3331	0.0020681	7.5458	0.0036015	477.28967645675783	18.439	0.78488	18.439	18.038	18.823	0					29	15	4	0	0	0	1.0574	1	297	297		26.796	1.3459	1	93221			20789	12026	14359	14392	23795	23795					0.08249207470782949
GPVRLGRGG	9	Unmodified	_GPVRLGRGG_					0	0	0			REV__ENST00000293379.8_1_12:54813056-54813194:-|nuORF	REV__ENST00000293379.8_1_12:54813056-54813194:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7593688964844	2	434.759218	867.503883	0.47737	0.00020754	-0.3499	-0.00015212	0.12747	5.5417E-05	434.7590122874237	86.762	1.6067	86.783	86.113	87.72	0.021263					95	37	5	0	0	0	0.80658	1	10840	10840		38.806	5.2906	1	4555800	+		20790	29959	14360	14393	23796	23796					0.06483159914284897
GPVSAVLLL	9	Unmodified	_GPVSAVLLL_					0	0	0			REV__ENST00000373887.7_1_9:123688936-123689077:-|nuORF	REV__ENST00000373887.7_1_9:123688936-123689077:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.77789306640625	2	434.778754	867.542954	-0.70209	-0.00030525	3.5486	0.0015428	2.8465	0.0012376	434.78014905088327	43.99	1.7815	43.99	43.332	45.114	0					128	50	3	0	0	0	0.75282	1	4161	4161		42.474	0	1	2428500	+		20791	31279	14361	14394	23797	23797					0.10388447425293634
GPVTAIKLL	9	Unmodified	_GPVTAIKLL_					0	0	0		nc|ENSG00000152595|Q9NQ76-3|MEPE;ENSG00000152595|ENST00000361056|MEPE;nc|ENSG00000152595|Q9NQ76-2|MEPE	nc|ENSG00000152595|Q9NQ76-3|MEPE	nc|ENSG00000152595|Q9NQ76-3|MEPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.282470703125	2	456.299853	910.585153	0.067937	3.0999E-05	2.8137	0.0012839	2.8817	0.0013149	456.30102237457436	34.717	1.3789	34.496	34.222	35.6	-0.22108					79	34	3	0	0	0	0.024354	1	2581	2581		23.042	0	1	875040			20792	6286	14362	14395	23798	23798					0.1262842283365444
GPVVGRRA	8	Unmodified	_GPVVGRRA_					0	0	0			REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF	REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.24835205078125	2	406.248486	810.48242	0.91382	0.00037124	-0.70868	-0.0002879	0.20513	8.3334E-05	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0239	1	10853	10853		33.516	6.7195	1	86727000	+		20793	34726	14363	14396	23799	23799					0.06959774885547176
GPWFVPKG	8	Unmodified	_GPWFVPKG_					0	0	0		nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2;ENSG00000171130|ENST00000425642|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2	nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2	nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2280578613281	2	444.242338	886.470124	-0.75082	-0.00033355	-1.1201	-0.00049758	-1.8709	-0.00083112	444.2399149329388	26.176	0.47372	25.94	25.593	26.067	-0.23603					18	12	3	0	0	0	0.027866	1	1340	1340		40.573	1.3198	1	86966			20794	18511	14364	14397	23800	23800					0.022347384225213318
GPYEKIVKR	9	Unmodified	_GPYEKIVKR_					0	0	0			REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.803466796875	2	545.324391	1088.63423	-0.96749	-0.00052759	0.19732	0.00010761	-0.77016	-0.00041999	545.324389074045	44.811	0.52603	44.847	44.681	45.207	0.0369					31	14	3	0	0	0	0.024405	1	4268	4268		53.351	2.016	1	455670	+		20795	20893	14365	14398	23801	23801					0.09345711122591638
GPYLTATC	8	Unmodified	_GPYLTATC_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.1510314941406	2	413.194196	824.37384	0.22784	9.414E-05	-1.6456	-0.00067994	-1.4177	-0.0005858	413.1934226147429	81.354	1.8942	81.126	79.925	81.819	-0.2289					61	45	2	0	0	0	0.027866	1	9800	9800		35.201	0	1	230220	+		20796	21219	14366	14399	23802	23802					-0.045371971997496985
GPYYNHARA	9	Unmodified	_GPYYNHARA_					0	0	0			REV__nc|ENSG00000141298|Q76I76-4|SSH2	REV__nc|ENSG00000141298|Q76I76-4|SSH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2767944335938	2	524.75159	1047.48863	-0.77607	-0.00040725	-2.6017	-0.0013652	-3.3777	-0.0017725	524.7499957850839	45.814	0.61948	45.814	45.58	46.199	0					43	17	4	0	0	0	0.024506	1	4526	4526		23.042	0	1	1786100	+		20797	24072	14367	14400	23803	23803					-0.033217516735930985
GQADLRKD	8	Unmodified	_GQADLRKD_					0	0	0			REV__ENSG00000198792|ENST00000361906|TMEM184B	REV__ENSG00000198792|ENST00000361906|TMEM184B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7610168457031	2	451.738148	901.461744	-0.46728	-0.00021109	-0.66583	-0.00030078	-1.1331	-0.00051187	451.7395425652216	39.468	0.19319	39.245	39.149	39.343	-0.22311					5	4	2	0	0	0	0.027866	1	3346	3346		39.253	6.4404	1	36713	+		20798	28478	14368	14401	23804	23804					0.007071397152230929
GQAGLKLLI	9	Unmodified	_GQAGLKLLI_					0	0	0		ENST00000482965.1_1_3:125168048-125179619:-|nuORF;ENST00000511697.1_1_17:46919069-46919841:+|nuORF	ENST00000482965.1_1_3:125168048-125179619:-|nuORF	ENST00000482965.1_1_3:125168048-125179619:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7976379394531	2	456.797478	911.580402	-0.66829	-0.00030527	-1.8812	-0.00085933	-2.5495	-0.0011646	456.7976999778129	64.846	0.72213	64.846	64.538	65.26	0					64	19	5	0	0	0	0.096521	2	7653	7653;7664		111.65	10.732	1	2448900			20799	15272	14369	14402	23805;23806	23805					0.1210753869090695
GQAGLKLLI	9	Unmodified	_GQAGLKLLI_					0	0	0		ENST00000482965.1_1_3:125168048-125179619:-|nuORF;ENST00000511697.1_1_17:46919069-46919841:+|nuORF	ENST00000482965.1_1_3:125168048-125179619:-|nuORF	ENST00000482965.1_1_3:125168048-125179619:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7972412109375	2	456.797478	911.580402	-1.2212	-0.00055783	1.7137	0.00078282	0.49253	0.00022499	456.79793414356436	65.117	0.73502	64.855	64.572	65.307	-0.2626					44	19	4	0	0	0	0.096521	2	7664	7664;7675		111.65	23.005	1	3044000			20800	15272	14369	14402	23807;23808	23807					0.1210753869090695
GQAGLKLLI	9	Unmodified	_GQAGLKLLI_					0	0	0		ENST00000482965.1_1_3:125168048-125179619:-|nuORF;ENST00000511697.1_1_17:46919069-46919841:+|nuORF	ENST00000482965.1_1_3:125168048-125179619:-|nuORF	ENST00000482965.1_1_3:125168048-125179619:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.79766845703125	2	456.797478	911.580402	-0.32469	-0.00014832	0.75421	0.00034452	0.42952	0.0001962	456.7975539611244	64.864	0.79432	64.901	64.595	65.389	0.037376					44	21	4	0	0	0	0.072054	2	7568	7568;7579		120.62	23.148	1	3115200			20801	15272	14369	14402	23809;23810	23809					0.1210753869090695
GQAKGCKQP	9	Unmodified	_GQAKGCKQP_					0	0	0		ENST00000309315.8_1_7:44809294-44809357:+|nuORF	ENST00000309315.8_1_7:44809294-44809357:+|nuORF	ENST00000309315.8_1_7:44809294-44809357:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	458.737094	915.459635	-0.41281	-0.00018937	1.0622	0.00048726	0.64937	0.00029789	458.7373569059761	30.341	0.94748	30.349	29.717	30.665	0.0086689					36	22	3	0	0	0	0.024	1	1935	1935		55.504	3.205	1	680500			20802	12042	14370	14403	23811	23811					-0.0014761229421083044
GQAKGCKQP	9	Unmodified	_GQAKGCKQP_					0	0	0		ENST00000309315.8_1_7:44809294-44809357:+|nuORF	ENST00000309315.8_1_7:44809294-44809357:+|nuORF	ENST00000309315.8_1_7:44809294-44809357:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7509460449219	2	458.737094	915.459635	-0.71417	-0.00032762	1.4567	0.00066825	0.74255	0.00034064	458.73743638509995	30.001	0.49845	30.078	29.841	30.34	0.077545					21	11	3	0	0	0	0.024381	1	1837	1837		29.15	0	1	408410			20803	12042	14370	14403	23812	23812					-0.0014761229421083044
GQAKHFITFA	10	Unmodified	_GQAKHFITFA_					0	0	0			REV__ENSG00000132702|ENST00000255039|HAPLN2	REV__ENSG00000132702|ENST00000255039|HAPLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2792358398438	2	560.300916	1118.58728	0.73337	0.00041091	4.0003	0.0022414	4.7337	0.0026523	560.3047893251158	84.669	0.25139	84.51	84.321	84.573	-0.15869					8	5	2	0	0	0	0.03519	1	10252	10252		20.947	0	1	22012	+		20804	23312	14371	14404	23813	23813					0.032728515714552486
GQALGRPATL	10	Unmodified	_GQALGRPATL_					0	0	0			REV__ENST00000250937.7_1_19:3490986-3491331:-|nuORF	REV__ENST00000250937.7_1_19:3490986-3491331:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.7567443847656	2	492.285266	982.555979	-0.1574	-7.7484E-05	3.3239	0.0016363	3.1666	0.0015588	492.2852050565304	23.686	0.46218	23.506	23.318	23.78	-0.17989					29	10	4	0	0	0	0.03519	1	985	985		49.442	13.823	1	226920	+		20805	29494	14372	14405	23814	23814					0.06400278537375925
GQALHQPL	8	Unmodified	_GQALHQPL_					0	0	0		ENST00000450172.5_2_3:46722734-46730936:-|nuORF;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000431015.5_2_3:46722577-46730936:-|nuORF	ENST00000450172.5_2_3:46722734-46730936:-|nuORF	ENST00000450172.5_2_3:46722734-46730936:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.5513000488281	2	432.240327	862.466101	-0.15504	-6.7014E-05	1.8834	0.00081407	1.7283	0.00074706	432.24097430684236	36.262	0.41251	36.3	36.133	36.545	0.03804					17	11	2	0	0	0	0.027866	1	2842	2842		14.664	0	1	109310			20806	8787	14373	14406	23815	23815					0.02936648928800878
GQANDIGLL	9	Unmodified	_GQANDIGLL_					0	0	0		nc|ENSG00000283706|Q9UI38|PRSS50	nc|ENSG00000283706|Q9UI38|PRSS50	nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7610168457031	2	450.742899	899.471246	-0.21384	-9.6387E-05	-0.15031	-6.7753E-05	-0.36415	-0.00016414	450.7435063820198	38.85	0.3552	38.85	38.721	39.076	0					17	9	3	0	0	0	0.02435	1	3295	3295		42.396	8.2236	1	1441800			20807	18806	14374	14407	23816	23816					0.017489080007635494
GQAPGVVRV	9	Unmodified	_GQAPGVVRV_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MSMS	OPSCC_39_ClassI_Rep-1	1	441.76141357421875	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.694	1	38.694	38.194	39.194	0								0	0	0	0.13392	1	3263	3263		84.916	10.941	1				20808	4628	14375	14408	23817	23817					0.06280624337182417
GQAPGVVRV	9	Unmodified	_GQAPGVVRV_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MSMS	OPSCC_39_ClassI_Rep-2	2	441.7614440917969	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.659	1	38.56	38.06	39.06	-0.098755								0	0	0	0.096542	1	3244	3244		93.195	7.836	1				20809	4628	14375	14408	23818	23818					0.06280624337182417
GQAPGVVRV	9	Unmodified	_GQAPGVVRV_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MSMS	OPSCC_39_ClassI_Rep-2	2	441.7614440917969	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.727	1	38.628	38.128	39.128	-0.098755								0	0	0	0.13392	1	3255	3255		84.916	2.6105	1				20810	4628	14375	14408	23819	23819					0.06280624337182417
GQAPGVVRV	9	Unmodified	_GQAPGVVRV_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MSMS	OPSCC_39_ClassI_Rep-3	3	441.76123046875	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.894	1	38.922	38.422	39.422	0.027275								0	0	0	0.052088	1	3240	3240		108.09	6.8759	1				20811	4628	14375	14408	23820	23820					0.06280624337182417
GQAPRQGP	8	Unmodified	_GQAPRQGP_					0	0	0			REV__ENSG00000060069|ENST00000613122|CTDP1	REV__ENSG00000060069|ENST00000613122|CTDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.2248840332031	2	405.714476	809.4144	0.83715	0.00033964	-0.58212	-0.00023617	0.25503	0.00010347	405.71410725412693	26.257	0.95009	26.257	26.001	26.951	0					47	22	3	0	0	0	0.027866	1	1407	1407		19.36	7.1531	1	433340	+		20812	20248	14376	14409	23821	23821					0.002069052349042977
GQAPRQGP	8	Unmodified	_GQAPRQGP_					0	0	0			REV__ENSG00000060069|ENST00000613122|CTDP1	REV__ENSG00000060069|ENST00000613122|CTDP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	405.714476	809.4144	0.073291	2.9735E-05	0.16047	6.5105E-05	0.23376	9.484E-05	405.71441939645723	26.281	0.81977	26.258	25.998	26.818	-0.023087	0.018798	0.00074291	NaN	12.959	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512350	+		20813	20248	14376	14409							0.002069052349042977
GQAPRQGP	8	Unmodified	_GQAPRQGP_					0	0	0			REV__ENSG00000060069|ENST00000613122|CTDP1	REV__ENSG00000060069|ENST00000613122|CTDP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	405.714476	809.4144	1.7208	0.00069815	-1.472	-0.0005972	0.24883	0.00010095	405.71374646022156	26.121	0.79254	26.202	25.836	26.629	0.081291	-0.03684	-0.00058171	NaN	12.959	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505720	+		20814	20248	14376	14409							0.002069052349042977
GQAPRQLL	8	Unmodified	_GQAPRQLL_					0	0	0			REV__ENST00000338591.7_1_1:897294-897751:+|nuORF	REV__ENST00000338591.7_1_1:897294-897751:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	441.7614440917969	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.773	1	38.773	38.273	39.273	0								0	0	0	0.35313	1	3275	3275		101.21	16.296	1		+		20815	30589	14377	14410	23822	23822					0.06280624337193785
GQAPRQLL	8	Unmodified	_GQAPRQLL_					0	0	0			REV__ENST00000338591.7_1_1:897294-897751:+|nuORF	REV__ENST00000338591.7_1_1:897294-897751:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	441.7615051269531	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.832	1	38.86	38.36	39.36	0.027275								0	0	0	0.34253	1	3230	3230		88.643	3.7273	1		+		20816	30589	14377	14410	23823	23823					0.06280624337193785
GQAPRQLL	8	Unmodified	_GQAPRQLL_					0	0	0			REV__ENST00000338591.7_1_1:897294-897751:+|nuORF	REV__ENST00000338591.7_1_1:897294-897751:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	441.7611083984375	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.968	1	38.992	38.492	39.492	0.023727								0	0	0	0.34253	1	3252	3252		88.643	17.347	1		+		20817	30589	14377	14410	23824	23824					0.06280624337193785
GQASESELDQ	10	Unmodified	_GQASESELDQ_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.2738037109375	2	532.23055	1062.44655	-0.54224	-0.0002886	1.7716	0.0009429	1.2294	0.0006543	532.2310508852423	49.748	0.44151	49.748	49.544	49.986	0					16	11	2	0	0	0	0.03519	1	5194	5194		31.53	0	1	126640	+		20818	32494	14378	14411	23825	23825					-0.0821781666327297
GQASESELDQ	10	Unmodified	_GQASESELDQ_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.23055	1062.44655	-0.32332	-0.00017208	1.0763	0.00057282	0.75295	0.00040074	532.2308745684276	49.95	0.32588	49.799	49.634	49.96	-0.1512	0.033434	-0.00057764	NaN	24.519	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142470	+		20819	32494	14378	14411							-0.0821781666327297
GQASESELDQ	10	Unmodified	_GQASESELDQ_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.23055	1062.44655	-1.1437	-0.0006087	1.7982	0.00095704	0.65449	0.00034834	532.2314072708923	49.676	0.37246	49.75	49.54	49.912	0.074196	-0.015583	0.00019079	NaN	24.519	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141040	+		20820	32494	14378	14411							-0.0821781666327297
GQDSESVLL	9	Unmodified	_GQDSESVLL_					0	0	0		ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.23797607421875	2	474.237647	946.460741	0.99265	0.00047075	0.33189	0.00015739	1.3245	0.00062815	474.2377559207591	72.353	0.88632	72.363	72.058	72.944	0.0097733					37	21	2	0	0	0	0.62163	1	8742	8742		51.335	1.3109	1	1328800			20821	8166	14379	14412	23826	23826					-0.01463119444304084
GQDSIVLLI	9	Unmodified	_GQDSIVLLI_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2846984863281	2	479.2844	956.554247	-0.19258	-9.2301E-05	0.60147	0.00028828	0.40889	0.00019597	479.28455219110884	90.081	1.5333	90.081	89.27	90.804	0					85	36	5	0	0	0	0.13494	1	11391	11391		102.77	8.7669	1	1732000			20822	6555	14380	14413	23827	23827					0.07423224728779587
GQDVGRYQV	9	Unmodified	_GQDVGRYQV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.256591796875	2	511.256705	1020.49886	-1.4954	-0.00076456	0.39801	0.00020348	-1.0974	-0.00056107	511.25688035614775	37.887	1.9965	37.887	36.764	38.761	0					109	54	5	0	0	0	0.03666	4	3120	3120;3131;3143;3155		136.27	56.556	1	12965000			20823	9004	14381	14414	23828;23829;23830;23831	23828					-0.010571887390028678
GQDVGRYQV	9	Unmodified	_GQDVGRYQV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2562561035156	2	511.256705	1020.49886	-1.1349	-0.00058021	0.076171	3.8943E-05	-1.0587	-0.00054126	511.2567548079122	37.769	1.8842	37.687	36.569	38.453	-0.082512					136	51	5	0	0	0	0.025498	4	3115	3083;3092;3103;3115		145.16	56.513	1	12306000			20824	9004	14381	14414	23832;23833;23834;23835	23835					-0.010571887390028678
GQDVGRYQV	9	Unmodified	_GQDVGRYQV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2563781738281	2	511.256705	1020.49886	-1.2935	-0.00066129	0.064033	3.2738E-05	-1.2294	-0.00062855	511.25672727504195	37.967	2.0865	37.995	36.873	38.96	0.027279					131	56	5	0	0	0	0.03666	4	3078	3066;3078;3088;3101		136.27	58.951	1	11441000			20825	9004	14381	14414	23836;23837;23838;23839	23837					-0.010571887390028678
GQDVKKNL	8	Unmodified	_GQDVKKNL_					0	0	0			REV__ENST00000459737.5_1_14:56079280-56084690:+|nuORF	REV__ENST00000459737.5_1_14:56079280-56084690:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2718200683594	2	451.258717	900.50288	0.26864	0.00012123	0.24801	0.00011192	0.51665	0.00023314	451.25883710733996	56.921	0.50696	56.719	56.557	57.064	-0.20209					17	13	2	0	0	0	0.027866	1	6175	6175		30.504	0	1	135170	+		20826	32829	14382	14415	23840	23840					0.048649007547169276
GQDVKKNL	8	Unmodified	_GQDVKKNL_					0	0	0			REV__ENST00000459737.5_1_14:56079280-56084690:+|nuORF	REV__ENST00000459737.5_1_14:56079280-56084690:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.258717	900.50288	-0.016625	-7.5024E-06	0.28038	0.00012652	0.26375	0.00011902	451.25890244068114	56.935	0.60431	56.767	56.363	56.967	-0.1672	0.02435	1.9195E-05	NaN	27.882	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149550	+		20827	32829	14382	14415							0.048649007547169276
GQEREGLFPLP	11	Unmodified	_GQEREGLFPLP_					0	0	0		ENST00000341697.7_1_1:151117547-151117748:-|nuORF	ENST00000341697.7_1_1:151117547-151117748:-|nuORF	ENST00000341697.7_1_1:151117547-151117748:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.8294067382812	2	621.827495	1241.64044	0.016614	1.0331E-05	3.2176	0.0020008	3.2342	0.0020111	621.8296146566832	98.983	0.44028	98.814	98.633	99.074	-0.16862					22	9	3	0	0	0	1.0238	1	12271	12271		31.53	2.3598	1	82810			20828	12498	14383	14416	23841	23841					0.029281845634614
GQFDHPNII	9	Unmodified	_GQFDHPNII_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5;EPHB1|p.R682L|1|0.35|ENSG00000154928|chr3:135192738-135192738|G/T|missense_variant;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000080224|Q9UF33-3|EPHA6;nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.F718Lfs*17|1|0.1|ENSG00000116106|chr2:221436591-221436591|A/-|frameshift_variant;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000154928|ENST00000398015|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7608642578125	2	520.761623	1039.50869	-0.13573	-7.0686E-05	1.2656	0.00065906	1.1298	0.00058837	521.2645258745613	55.821	0.53464	55.821	55.5	56.035	0					25	14	2	0	0	0	0.2101	4	6201	6182;6195;6201;6215		87.696	17.722	1	6011400			20829	1093;3518;1439;6443;9146;1683	14384	14417	23842;23843;23844;23845	23844					-0.009480007336378549
GQFDHPNII	9	Unmodified	_GQFDHPNII_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5;EPHB1|p.R682L|1|0.35|ENSG00000154928|chr3:135192738-135192738|G/T|missense_variant;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000080224|Q9UF33-3|EPHA6;nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.F718Lfs*17|1|0.1|ENSG00000116106|chr2:221436591-221436591|A/-|frameshift_variant;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000154928|ENST00000398015|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7616577148438	2	520.761623	1039.50869	-0.25831	-0.00013452	1.439	0.00074938	1.1807	0.00061486	521.2646129925	55.915	0.59127	55.759	55.367	55.958	-0.15601					26	15	2	0	0	0	0.14024	3	6178	6170;6178;6191		101.6	46.824	1	5823500			20830	1093;3518;1439;6443;9146;1683	14384	14417	23846;23847;23848	23847					-0.009480007336378549
GQFDHPNII	9	Unmodified	_GQFDHPNII_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5;EPHB1|p.R682L|1|0.35|ENSG00000154928|chr3:135192738-135192738|G/T|missense_variant;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000080224|Q9UF33-3|EPHA6;nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.F718Lfs*17|1|0.1|ENSG00000116106|chr2:221436591-221436591|A/-|frameshift_variant;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000154928|ENST00000398015|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3	MSMS	OPSCC_39_ClassI_Rep-3	3	520.7615356445312	2	520.761623	1039.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.609	1	55.707	55.207	56.207	0.098015								0	0	0	0.084717	1	6078	6078		95.815	43.516	1				20831	1093;3518;1439;6443;9146;1683	14384	14417	23849	23849					-0.009480007336378549
GQFDHPNII	9	Unmodified	_GQFDHPNII_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5;EPHB1|p.R682L|1|0.35|ENSG00000154928|chr3:135192738-135192738|G/T|missense_variant;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000080224|Q9UF33-3|EPHA6;nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.F718Lfs*17|1|0.1|ENSG00000116106|chr2:221436591-221436591|A/-|frameshift_variant;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000154928|ENST00000398015|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3;ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000182580|ENST00000330394|EPHB3	ENSG00000044524|ENST00000336596|EPHA3	MSMS	OPSCC_39_ClassI_Rep-3	3	520.7616577148438	2	520.761623	1039.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.684	1	55.782	55.282	56.282	0.098015								0	0	0	0.073652	1	6090	6090		98.629	32.2	1				20832	1093;3518;1439;6443;9146;1683	14384	14417	23850	23850					-0.009480007336378549
GQFDHPNVI	9	Unmodified	_GQFDHPNVI_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7538452148438	2	513.753798	1025.49304	-0.30899	-0.00015874	0.23305	0.00011973	-0.075938	-3.9013E-05	513.7536480327243	50.81	0.95703	50.81	50.544	51.501	0					77	26	4	0	0	0	0.14181	1	5357	5357		101.25	19.012	1	3537200			20833	4692	14385	14418	23851	23851					-0.01868287250681533
GQFDHPNVI	9	Unmodified	_GQFDHPNVI_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7535400390625	2	513.753798	1025.49304	-0.2927	-0.00015038	0.25098	0.00012894	-0.041717	-2.1433E-05	513.7535944685329	51.019	0.94758	50.87	50.561	51.509	-0.14916					74	26	4	0	0	0	0.10464	1	5362	5362		109.48	16.283	1	3460100			20834	4692	14385	14418	23852	23852					-0.01868287250681533
GQFDHPNVI	9	Unmodified	_GQFDHPNVI_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7530517578125	2	513.753798	1025.49304	-0.86368	-0.00044372	0.76929	0.00039522	-0.094389	-4.8493E-05	513.7538969333382	50.68	0.99505	50.761	50.444	51.439	0.08099					72	27	4	0	0	0	0.26413	1	5270	5270		80.455	16.247	1	3746600			20835	4692	14385	14418	23853	23853					-0.01868287250681533
GQFDVEFRL	9	Unmodified	_GQFDVEFRL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.783447265625	2	555.782556	1109.55056	0.81907	0.00045523	-0.31292	-0.00017391	0.50616	0.00028131	555.7822017243899	73.735	1.0346	73.735	73.516	74.551	0					43	24	3	0	0	0	0.28047	1	9008	9008		78.264	16.156	1	1437900			20836	8473	14386	14419	23854	23854					0.00016554954913772235
GQFDVEFRL	9	Unmodified	_GQFDVEFRL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.7825927734375	2	555.782556	1109.55056	-0.21489	-0.00011943	0.73071	0.00040612	0.51582	0.00028668	555.7826667878276	74.028	1.0268	73.757	73.538	74.565	-0.27126					43	24	3	0	0	0	0.20652	2	9031	9015;9031		88.177	32.454	1	1537900			20837	8473	14386	14419	23855;23856	23856					0.00016554954913772235
GQFDVEFRL	9	Unmodified	_GQFDVEFRL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.78466796875	2	555.782556	1109.55056	-0.30134	-0.00016748	0.33995	0.00018894	0.038607	2.1457E-05	555.7826643664587	73.694	0.91794	73.704	73.479	74.397	0.0096512					38	21	2	0	0	0	0.15388	2	8926	8926;8937		98.582	28.059	1	1497600			20838	8473	14386	14419	23857;23858	23857					0.00016554954913772235
GQFEHPNII	9	Unmodified	_GQFEHPNII_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	527.7694091796875	2	527.769448	1053.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.409	1	53.409	52.909	53.909	0								0	0	0	0.061278	1	5776	5776		104.06	7.8664	1				20839	9869	14387	14420	23859	23859					-0.00027714216571439465
GQFEHPNII	9	Unmodified	_GQFEHPNII_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	527.769775390625	2	527.769448	1053.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.54	1	53.54	53.04	54.04	0								0	0	0	0.035202	1	5798	5798		115.49	30.579	1				20840	9869	14387	14420	23860	23860					-0.00027714216571439465
GQFEHPNII	9	Unmodified	_GQFEHPNII_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	527.7695922851562	2	527.769448	1053.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.618	1	53.618	53.118	54.118	0								0	0	0	0.084717	1	5811	5811		95.815	15.361	1				20841	9869	14387	14420	23861	23861					-0.00027714216571439465
GQFEHPNII	9	Unmodified	_GQFEHPNII_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.769287109375	2	527.769448	1053.52434	-0.99378	-0.00052449	0.91808	0.00048454	-0.075694	-3.9949E-05	527.7699174029117	53.562	1.3293	53.414	52.758	54.088	-0.14723					104	36	4	0	0	0	0.16638	3	5793	5768;5780;5793		95.815	8.3867	1	8004600			20842	9869	14387	14420	23862;23863;23864	23864					-0.00027714216571439465
GQFEHPNII	9	Unmodified	_GQFEHPNII_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7700805664062	2	527.769448	1053.52434	-0.3986	-0.00021037	0.61704	0.00032566	0.21845	0.00011529	527.7698209015659	53.293	1.4699	53.388	52.641	54.111	0.095669					132	40	5	0	0	0	0.053401	3	5670	5670;5693;5706		127.46	47.749	1	8372300			20843	9869	14387	14420	23865;23866;23867	23865					-0.00027714216571439465
GQFGKILDV	9	Unmodified	_GQFGKILDV_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;ENST00000491982.1_1_22:36174014-36236265:-|nuORF;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000100320|O43251-6|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;ENSG00000078328|ENST00000550418|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000167281|A6NFN3|RBFOX3;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;ENSG00000167281|ENST00000693108|RBFOX3;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000100320|O43251-8|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7767639160156	2	488.776742	975.538931	-0.51026	-0.00024941	0.68547	0.00033504	0.1752	8.5635E-05	488.7769560760507	61.922	1.1582	61.922	60.958	62.117	0					87	30	4	0	0	0	0.053401	3	7191	7179;7191;7205		127.46	48.011	1	5190400			20844	18125	14388	14421	23868;23869;23870	23869					0.050183579315557836
GQFGKILDV	9	Unmodified	_GQFGKILDV_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;ENST00000491982.1_1_22:36174014-36236265:-|nuORF;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000100320|O43251-6|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;ENSG00000078328|ENST00000550418|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000167281|A6NFN3|RBFOX3;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;ENSG00000167281|ENST00000693108|RBFOX3;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000100320|O43251-8|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7764587402344	2	488.776742	975.538931	-0.40415	-0.00019754	0.36322	0.00017753	-0.040929	-2.0005E-05	488.7767975955926	62.154	0.46887	61.927	61.687	62.156	-0.22663					33	12	3	0	0	0	0.03201	3	7201	7177;7187;7201		139.97	60.519	1	4842400			20845	18125	14388	14421	23871;23872;23873	23873					0.050183579315557836
GQFGKILDV	9	Unmodified	_GQFGKILDV_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;ENST00000491982.1_1_22:36174014-36236265:-|nuORF;nc|ENSG00000078328|Q9NWB1-4|RBFOX1;nc|ENSG00000100320|O43251-6|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000078328|Q9NWB1-2|RBFOX1;ENSG00000078328|ENST00000550418|RBFOX1;nc|ENSG00000078328|Q9NWB1-5|RBFOX1;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000167281|A6NFN3|RBFOX3;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000078328|Q9NWB1-3|RBFOX1;ENSG00000167281|ENST00000693108|RBFOX3;nc|ENSG00000167281|A6NFN3-2|RBFOX3;nc|ENSG00000100320|O43251-8|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.776611328125	2	488.776742	975.538931	-0.97535	-0.00047673	0.94179	0.00046032	-0.033557	-1.6402E-05	488.77708997541754	61.802	0.42614	61.865	61.661	62.087	0.062763					31	11	3	0	0	0	0.12914	4	7090	7079;7090;7104;7116		104.06	38.288	1	4854900			20846	18125	14388	14421	23874;23875;23876;23877	23875					0.050183579315557836
GQFIARAV	8	Unmodified	_GQFIARAV_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	431.2509460449219	2	431.250695	860.486836	-0.1588	-6.8483E-05	0.52106	0.00022471	0.36226	0.00015622	431.2508082229918	42.887	0.79824	42.887	42.605	43.404	0					38	21	2	0	0	0	0.50239	1	3981	3981		85.359	11.385	1	3100400			20847	6143	14389	14422	23878	23878					0.051012393084647556
GQFIARAV	8	Unmodified	_GQFIARAV_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	431.2508239746094	2	431.250695	860.486836	-0.049706	-2.1436E-05	0.29224	0.00012603	0.24254	0.00010459	431.2506990497379	43.043	0.83583	42.903	42.667	43.503	-0.13929					40	22	2	0	0	0	0.6248	1	3987	3987		73.975	10.668	1	3306600			20848	6143	14389	14422	23879	23879					0.051012393084647556
GQFIARAV	8	Unmodified	_GQFIARAV_					0	0	0		ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	ENSG00000150593|ENST00000280154|PDCD4	ENSG00000150593|ENST00000280154|PDCD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	431.2508544921875	2	431.250695	860.486836	0.68115	0.00029375	-0.38904	-0.00016777	0.29212	0.00012598	431.2503423265744	42.961	0.76389	42.992	42.722	43.486	0.030827					42	20	3	0	0	0	0.39824	1	3935	3935		97.473	12.113	1	3501200			20849	6143	14389	14422	23880	23880					0.051012393084647556
GQFIGPHRI	9	Unmodified	_GQFIGPHRI_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.7877807617188	2	512.787976	1023.5614	-1.2987	-0.00066594	0.75576	0.00038754	-0.54291	-0.0002784	512.7883691387221	38.303	0.86348	38.303	37.969	38.833	0					85	23	6	0	0	0	0.18915	3	3218	3191;3206;3218		90.777	35.272	1	11670000			20850	10135	14390	14423	23881;23882;23883	23883					0.050560021198293725
GQFIGPHRI	9	Unmodified	_GQFIGPHRI_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.7877807617188	2	512.787976	1023.5614	-0.90595	-0.00046456	0.32237	0.00016531	-0.58358	-0.00029925	512.788179443238	38.228	0.97612	38.145	37.777	38.753	-0.082516					91	26	6	0	0	0	0.18915	4	3176	3166;3176;3188;3203		90.777	17.344	1	10576000			20851	10135	14390	14423	23884;23885;23886;23887	23885					0.050560021198293725
GQFIGPHRI	9	Unmodified	_GQFIGPHRI_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7879638671875	2	512.787976	1023.5614	-1.9377	-0.00099364	1.369	0.00070202	-0.5687	-0.00029162	512.7887136455325	38.451	0.90522	38.478	38.127	39.032	0.027275					91	24	6	0	0	0	0.15029	4	3178	3167;3178;3190;3205		99.375	28.079	1	10593000			20852	10135	14390	14423	23888;23889;23890;23891	23889					0.050560021198293725
GQFILQNL	8	Unmodified	_GQFILQNL_					0	0	0		nc|ENSG00000196950|Q9ULF5-2|SLC39A10;ENST00000430412.5_1_2:196521853-196599762:+|nuORF;ENSG00000196950|ENST00000359634|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.763671875	2	466.763635	931.512717	0.85426	0.00039874	-0.67518	-0.00031515	0.17908	8.3589E-05	466.76318932299245	70.011	0.68952	69.718	69.348	70.038	-0.29292					52	16	4	0	0	0	0.42327	1	8403	8403		94.006	11.701	1	3707500			20853	9938	14391	14424	23892	23892					0.04422088760088627
GQFKDIITKV	10	Unmodified	_GQFKDIITKV_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.836669921875	2	574.837331	1147.66011	-0.78382	-0.00045057	-0.22439	-0.00012899	-1.0082	-0.00057956	574.8371117763027	51.583	1.4871	51.583	51.067	52.554	0					122	40	5	0	0	0	0.0055314	4	5475	5463;5475;5487;5499		178.55	85.352	1	13948000			20854	456;1424	14392	14425	23893;23894;23895;23896	23894					0.09218560574186085
GQFKDIITKV	10	Unmodified	_GQFKDIITKV_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.8361206054688	2	574.837331	1147.66011	-0.54216	-0.00031165	-0.54313	-0.00031221	-1.0853	-0.00062387	574.8369316236741	51.744	1.3316	51.596	51.157	52.488	-0.14735					114	36	5	0	0	0	0.011429	5	5469	5459;5469;5480;5492;5506		169.65	80.571	1	12816000			20855	456;1424	14392	14425	23897;23898;23899;23900;23901	23898					0.09218560574186085
GQFKDIITKV	10	Unmodified	_GQFKDIITKV_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.8368530273438	2	574.837331	1147.66011	-1.4382	-0.00082673	0.41057	0.00023601	-1.0276	-0.00059072	574.8374778218508	51.479	1.6277	51.566	51.077	52.705	0.087006					130	43	5	0	0	0	0.0041366	5	5372	5372;5382;5393;5405;5418		182.39	86.576	1	13379000			20856	456;1424	14392	14425	23902;23903;23904;23905;23906	23902					0.09218560574186085
GQFKTYAI	8	Unmodified	_GQFKTYAI_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2503356933594	2	464.25036	926.486168	-0.57574	-0.00026729	-0.054016	-2.5077E-05	-0.62976	-0.00029237	464.2503925053204	47.929	1.9482	47.929	47.56	49.508	0					193	56	6	0	0	0	0.27973	6	4867	4831;4843;4855;4867;4879;4891		120.62	40.682	1	137570000			20857	8206	14393	14426	23907;23908;23909;23910;23911;23912	23910					0.01998399868762135
GQFKTYAI	8	Unmodified	_GQFKTYAI_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2500305175781	2	464.25036	926.486168	-0.5528	-0.00025664	-0.083251	-3.8649E-05	-0.63605	-0.00029529	464.2503727572614	48.083	2.0265	47.93	47.606	49.632	-0.15301					205	57	6	0	0	0	0.32162	9	4843	4822;4831;4843;4855;4867;4879;4904;4916;4930		108.09	28.636	1	130920000			20858	8206	14393	14426	23913;23914;23915;23916;23917;23918;23919;23920;23921	23915					0.01998399868762135
GQFKTYAI	8	Unmodified	_GQFKTYAI_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2515563964844	2	464.25036	926.486168	-0.0003381	-1.5696E-07	-0.50587	-0.00023485	-0.5062	-0.00023501	464.25018018463044	47.819	1.9337	47.878	47.554	49.488	0.059093					181	54	5	0	0	0	0.30053	8	4762	4742;4750;4762;4774;4786;4798;4811;4824		111.65	29.343	1	146440000			20859	8206	14393	14426	23922;23923;23924;23925;23926;23927;23928;23929	23924					0.01998399868762135
GQFLIQQV	8	Unmodified	_GQFLIQQV_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7637634277344	2	466.763635	931.512717	0.0087534	4.0858E-06	0.14549	6.7908E-05	0.15424	7.1994E-05	466.76360690637006	69.688	0.64894	69.688	69.344	69.993	0					46	15	4	0	0	0	0.33369	1	8407	8407		106.42	0	1	3720100			20860	3426	14394	14427	23930	23930					0.04422088760088627
GQFLIQQV	8	Unmodified	_GQFLIQQV_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7638244628906	2	466.763635	931.512717	0.85426	0.00039874	-0.67518	-0.00031515	0.17908	8.3589E-05	466.76318932299245	70.011	0.68952	69.718	69.348	70.038	-0.29292					52	16	4	0	0	0	0.26064	1	8413	8413		128.86	13.402	1	3707500			20861	3426	14394	14427	23931	23931					0.04422088760088627
GQFLIQQV	8	Unmodified	_GQFLIQQV_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.76416015625	2	466.763635	931.512717	0.41126	0.00019196	-0.24371	-0.00011375	0.16755	7.8207E-05	466.7634096958611	69.758	0.6471	69.771	69.424	70.071	0.012421					45	15	4	0	0	0	0.2822	2	8329	8329;8341		119.56	6.1452	1	3795700			20862	3426	14394	14427	23932;23933	23932					0.04422088760088627
GQFPLSITL	9	Unmodified	_GQFPLSITL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.27874755859375	2	488.279118	974.543683	-1.1147	-0.0005443	1.3772	0.00067245	0.26245	0.00012815	488.27962971256983	90.451	0.74986	90.451	90.054	90.804	0					45	17	3	0	0	0	0.013094	1	11442	11442		171.38	63.297	1	862390			20863	9038	14395	14428	23934	23934					0.055392420743373805
GQFPLSITL	9	Unmodified	_GQFPLSITL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.27874755859375	2	488.279118	974.543683	-0.10225	-4.9926E-05	0.38619	0.00018857	0.28394	0.00013864	488.27912934331096	90.441	0.91351	90.455	90.121	91.035	0.013443					56	21	3	0	0	0	0.027092	1	11366	11366		143.89	42.286	1	1036700			20864	9038	14395	14428	23935	23935					0.055392420743373805
GQFTLFCI	8	Unmodified	_GQFTLFCI_					0	0	0		ENST00000343455.7_1_14:95562307-95562397:-|nuORF	ENST00000343455.7_1_14:95562307-95562397:-|nuORF	ENST00000343455.7_1_14:95562307-95562397:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.25054931640625	2	464.733489	927.452425	-0.6032	-0.00028033	-3.4062	-0.001583	-4.0094	-0.0018633	464.7325831669871	47.978	0.43221	47.978	47.811	48.243	0					16	12	2	0	0	0	0.027866	1	4905	4905		60.294	0	1	481900			20865	12531	14396	14429	23936	23936					-0.014203448946545905
GQGAKHGGK	9	Unmodified	_GQGAKHGGK_					0	0	0			REV__ENST00000520076.5_1_8:82633312-82633516:-|nuORF	REV__ENST00000520076.5_1_8:82633312-82633516:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.74359130859375	2	420.227751	838.440949	-0.57194	-0.00024035	-3.2275	-0.0013563	-3.7994	-0.0015966	420.22473908099715	27.541	0.58959	27.622	27.282	27.872	0.081293					30	15	3	0	0	0	0.024323	1	1439	1439		35.618	0	1	63008	+		20866	34285	14397	14430	23937	23937					0.015265941262327942
GQGGLELLTS	10	Unmodified	_GQGGLELLTS_					0	0	0		ENST00000430404.6_1_7:96608588-96641184:-|nuORF	ENST00000430404.6_1_7:96608588-96641184:-|nuORF	ENST00000430404.6_1_7:96608588-96641184:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79766845703125	2	487.761289	973.508025	-0.48143	-0.00023482	-4.4163	-0.0021541	-4.8977	-0.0023889	487.7596012032485	50.482	0.26772	50.482	50.341	50.609	0					10	7	2	0	0	0	0.03519	1	5291	5291		32.812	0	1	144410			20867	14169	14398	14431	23938	23938					0.02021159826665553
GQGGPKNYLY	10	Unmodified	_GQGGPKNYLY_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.7724609375	2	548.774731	1095.53491	-0.31611	-0.00017347	-2.7971	-0.001535	-3.1133	-0.0017085	548.7730576824116	35.701	0.85921	35.489	35.233	36.092	-0.21246					47	23	4	0	0	0	0.941	1	2724	2724		51.335	0	1	2966500	+		20868	28398	14399	14432	23939	23939					-0.009037315621526432
GQGHFVLLD	9	Unmodified	_GQGHFVLLD_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27947998046875	2	493.258717	984.50288	-0.21312	-0.00010512	3.1704	0.0015638	2.9572	0.0014587	493.26025726995476	41.717	1.0562	41.585	40.897	41.953	-0.13219					66	29	4	0	0	0	0.024323	1	3671	3671		14.865	0	1	2581200			20869	8777	14400	14433	23940	23940					0.010009007547182591
GQGHGRVL	8	Unmodified	_GQGHGRVL_					0	0	0			REV__ENST00000561734.5_1_16:835204-835471:-|nuORF	REV__ENST00000561734.5_1_16:835204-835471:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.2307434082031	2	412.230294	822.446034	0.38571	0.000159	0.30645	0.00012633	0.69216	0.00028533	412.23037967870096	27.434	2.0819	27.434	26.531	28.613	0					138	52	4	0	0	0	0.97924	1	1520	1520		40.573	0	1	8114200	+		20870	35179	14401	14434	23941	23941					0.02770897988852994
GQGHPGSAGFP	11	Unmodified	_GQGHPGSAGFP_					0	0	0		ENST00000591727.1_1_19:13972939-13991381:+|nuORF;ENST00000397555.3_1_19:13988417-13991381:+|nuORF	ENST00000591727.1_1_19:13972939-13991381:+|nuORF	ENST00000591727.1_1_19:13972939-13991381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.2383728027344	2	506.235773	1010.45699	-0.023379	-1.1835E-05	-2.7917	-0.0014132	-2.8151	-0.0014251	506.23399619635586	63.751	0.43069	63.5	63.264	63.695	-0.25141					17	11	2	0	0	0	0.024812	1	7442	7442		33.922	7.1255	1	200090			20871	13597	14402	14435	23942	23942					-0.04781744427521062
GQGIPLGVKW	10	Unmodified	_GQGIPLGVKW_					0	0	0			REV__ENST00000555351.1_1_14:97263783-97319303:+|nuORF	REV__ENST00000555351.1_1_14:97263783-97319303:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.823974609375	2	527.805834	1053.59712	-0.11261	-5.9437E-05	-3.7085	-0.0019574	-3.8211	-0.0020168	527.8046300488446	68.869	0.46281	68.576	68.171	68.634	-0.29267					14	11	2	0	0	0	0.03519	1	8219	8219		27.882	0	1	71137	+		20872	21148	14403	14436	23943	23943					0.07246039576853036
GQGLERLLTI	10	Unmodified	_GQGLERLLTI_					0	0	0			REV__ENSG00000171105|ENST00000302850|INSR	REV__ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8088989257812	2	550.327131	1098.63971	-1.2801	-0.00070445	-1.1785	-0.00064855	-2.4585	-0.001353	550.8266197510667	55.989	0.51376	55.773	55.373	55.887	-0.21551					26	13	3	0	0	0	0.03519	1	5992	5992		19.104	0	1	271500	+		20873	26543	14404	14437	23944	23944					0.09433389914420331
GQGLGGGPFTL	11	Unmodified	_GQGLGGGPFTL_					0	0	0			REV__ENST00000482143.5_1_1:46649328-46650297:+|nuORF	REV__ENST00000482143.5_1_1:46649328-46650297:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.80035400390625	2	502.263999	1002.51345	-0.023572	-1.1839E-05	-0.55559	-0.00027905	-0.57916	-0.00029089	502.2623891921121	46.58	0.10536	46.632	46.544	46.649	0.051395					4	2	2	0	0	0	0.024727	1	4552	4552		12.812	0.60486	1	59619	+		20874	33477	14405	14438	23945	23945					0.012288834091350509
GQGLRHGLP	9	Unmodified	_GQGLRHGLP_					0	0	0		ENST00000322313.8_1_2:128459548-128459872:-|nuORF	ENST00000322313.8_1_2:128459548-128459872:-|nuORF	ENST00000322313.8_1_2:128459548-128459872:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.715087890625	2	467.764501	933.514448	-0.65164	-0.00030481	-3.9094	-0.0018287	-4.561	-0.0021335	467.764877431167	25.569	0.75742	25.569	25.285	26.043	0					30	17	2	0	0	0	0.024457	1	1286	1286		15.642	3.435	1	48735			20875	12221	14406	14439	23946	23946					0.045031425686943294
GQGLVKQSL	9	Unmodified	_GQGLVKQSL_					0	0	0			REV__ENSG00000157456|ENST00000288207|CCNB2	REV__ENSG00000157456|ENST00000288207|CCNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7775573730469	2	465.274367	928.53418	0.12216	5.6838E-05	-1.1752	-0.00054681	-1.0531	-0.00048997	465.27338076746395	49.835	0.73524	49.683	49.33	50.065	-0.1512					29	19	3	0	0	0	0.024209	1	5097	5097		24.519	4.5224	1	156530	+		20876	25132	14407	14440	23947	23947					0.06705473788792915
GQGPDELLL	9	Unmodified	_GQGPDELLL_					0	0	0			REV__nc|ENSG00000180539|Q6ZV77|LINC02908	REV__nc|ENSG00000180539|Q6ZV77|LINC02908	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.25140380859375	2	471.250557	940.486562	-0.46427	-0.00021879	2.8383	0.0013375	2.374	0.0011187	471.25136731490943	27.641	1.6544	27.485	26.544	28.198	-0.15664					93	39	4	0	0	0	0.67687	1	1519	1519		47.657	1.7054	1	872240	+		20877	36986	14408	14441	23948	23948					0.013937747979525739
GQGPSHLSV	9	Unmodified	_GQGPSHLSV_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.2273864746094	2	441.227417	880.44028	-0.40438	-0.00017842	0.42281	0.00018656	0.018438	8.1353E-06	441.22755708714925	34.963	0.90191	34.963	34.59	35.492	0					65	23	4	0	0	0	0.082191	3	2646	2636;2646;2658		116.9	42.929	1	5401700			20878	4246	14409	14442	23949;23950;23951	23950					-0.004722453134718307
GQGPSHLSV	9	Unmodified	_GQGPSHLSV_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.22747802734375	2	441.227417	880.44028	-0.43207	-0.00019064	0.50054	0.00022085	0.068465	3.0209E-05	441.2275742708264	34.766	1.0289	34.744	34.357	35.386	-0.021763					82	26	5	0	0	0	0.14024	3	2612	2590;2601;2612		101.6	38.294	1	4738400			20879	4246	14409	14442	23952;23953;23954	23954					-0.004722453134718307
GQGPSHLSV	9	Unmodified	_GQGPSHLSV_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.2273864746094	2	441.227417	880.44028	-0.45153	-0.00019923	0.5883	0.00025957	0.13676	6.0343E-05	441.22762088031214	34.747	0.94623	34.797	34.441	35.388	0.050255					78	24	6	0	0	0	0.091713	3	2552	2552;2560;2573		113.41	50.105	1	4275300			20880	4246	14409	14442	23955;23956;23957	23955					-0.004722453134718307
GQGPVFPRS	9	Unmodified	_GQGPVFPRS_					0	0	0			REV__nc|ENSG00000048991|Q15032|R3HDM1	REV__nc|ENSG00000048991|Q15032|R3HDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7718811035156	2	472.751059	943.487565	-0.011837	-5.596E-06	2.6764	0.0012653	2.6646	0.0012597	472.752290334498	38.764	0.7833	38.665	38.166	38.949	-0.098751					45	20	3	0	0	0	0.024436	1	3257	3257		30.504	0	1	658890	+		20881	20143	14410	14443	23958	23958					0.01356033957517866
GQGQGQLLI	9	Unmodified	_GQGQGQLLI_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2588195800781	2	457.258717	912.50288	0.63426	0.00029002	-0.62021	-0.0002836	0.014046	6.4228E-06	457.2583815385292	61.301	0.94774	61.301	60.921	61.868	0					74	24	4	0	0	0	0.016838	5	7077	7067;7077;7087;7099;7113		152.63	26.615	1	6220300			20882	2021	14411	14444	23959;23960;23961;23962;23963	23960					0.04312900754723614
GQGQGQLLI	9	Unmodified	_GQGQGQLLI_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2588806152344	2	457.258717	912.50288	0.30603	0.00013993	-0.22517	-0.00010296	0.080855	3.6971E-05	457.25853038070363	61.491	0.97244	61.264	60.937	61.909	-0.22663					71	25	4	0	0	0	0.016838	4	7102	7067;7078;7090;7102		152.63	47.887	1	6947100			20883	2021	14411	14444	23964;23965;23966;23967	23967					0.04312900754723614
GQGQGQLLI	9	Unmodified	_GQGQGQLLI_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.25897216796875	2	457.258717	912.50288	0.37752	0.00017262	-0.52101	-0.00023824	-0.1435	-6.5615E-05	457.25830267896174	61.175	1.648	61.246	60.272	61.92	0.071125					133	43	5	0	0	0	0.016838	4	6993	6970;6993;7005;7018		152.63	38.867	1	6946300			20884	2021	14411	14444	23968;23969;23970;23971	23969					0.04312900754723614
GQGQPPSVSPL	11	Unmodified	_GQGQPPSVSPL_					0	0	0			REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF	REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8056640625	2	533.780013	1065.54547	-0.98581	-0.00052621	1.5941	0.00085088	0.60826	0.00032468	533.7803797685459	45.064	0.23993	45.064	45.006	45.246	0					10	6	2	0	0	0	0.024795	1	4345	4345		51.193	33.828	1	486490	+		20885	31502	14412	14445	23972	23972					0.015322510922715082
GQGQTIMQV	9	Unmodified	_GQGQTIMQV_					0	0	0		nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA	nc|ENSG00000001167|P23511-2|NFYA	nc|ENSG00000001167|P23511-2|NFYA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.80560302734375	2	481.242209	960.469866	-0.74063	-0.00035642	0.61862	0.00029771	-0.122	-5.8714E-05	481.24229711266344	53.371	0.50554	53.467	53.266	53.771	0.095669					31	13	3	0	0	0	0.024313	1	5700	5700		60.118	21.312	1	1402800			20886	717	14413	14446	23973	23973					-0.011950493596373235
GQGQTVGPSSP	11	Unmodified	_GQGQTVGPSSP_					0	0	0		ENST00000521478.1_1_7:27186941-27190216:-|nuORF	ENST00000521478.1_1_7:27186941-27190216:-|nuORF	ENST00000521478.1_1_7:27186941-27190216:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3074951171875	2	507.74617	1013.47779	-0.28866	-0.00014657	-4.3567	-0.0022121	-4.6454	-0.0023587	507.7422828873661	43.466	0.17513	43.354	43.288	43.463	-0.11253					5	4	2	0	0	0	0.024804	1	3988	3988		32.751	0	1	76830			20887	16004	14414	14447	23974	23974					-0.028411988385187215
GQGQVNRPL	9	Unmodified	_GQGQVNRPL_					0	0	0			REV__ENST00000372067.7_1_6:43752845-43752986:+|nuORF	REV__ENST00000372067.7_1_6:43752845-43752986:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.28326416015625	2	484.76724	967.519927	-1.0008	-0.00048515	0.97191	0.00047115	-0.028881	-1.4001E-05	484.76762972497164	21.685	0.91298	21.756	21.401	22.314	0.071487					35	18	3	0	0	0	0.024381	1	640	640		45.952	16.802	1	641390	+		20888	31189	14415	14448	23975	23975					0.03486821360513659
GQGRIILKA	9	Unmodified	_GQGRIILKA_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.3056335449219	2	478.306001	954.597449	0.17438	8.3406E-05	-1.4007	-0.00066995	-1.2263	-0.00058654	478.30553356521926	32.359	1.709	32.359	32.03	33.739	0					117	45	5	0	0	0	0.20967	3	2211	2211;2219;2243		87.754	27.46	1	20747000			20889	2014	14416	14449	23976;23977;23978	23976					0.11833459296701676
GQGRIILKA	9	Unmodified	_GQGRIILKA_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.3057556152344	2	478.306001	954.597449	-0.16623	-7.9508E-05	-1.0636	-0.00050873	-1.2298	-0.00058824	478.30570445946177	32.267	1.4498	32.279	31.943	33.393	0.011795					104	38	5	0	0	0	0.15029	3	2197	2187;2197;2209		99.375	22.528	1	21017000			20890	2014	14416	14449	23979;23980;23981	23980					0.11833459296701676
GQGRIILKA	9	Unmodified	_GQGRIILKA_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3056640625	2	478.306001	954.597449	-0.30136	-0.00014414	-0.93709	-0.00044822	-1.2385	-0.00059236	478.3058174106144	32.082	1.4821	32.145	31.839	33.321	0.062885					107	38	5	0	0	0	0.20967	3	2140	2124;2140;2152		87.754	23.947	1	19755000			20891	2014	14416	14449	23982;23983;23984	23983					0.11833459296701676
GQGSGVAPLL	10	Unmodified	_GQGSGVAPLL_					0	0	0		ENST00000528845.5_1_11:405735-405882:-|nuORF	ENST00000528845.5_1_11:405735-405882:-|nuORF	ENST00000528845.5_1_11:405735-405882:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.1772766113281	2	449.753267	897.491981	0.3729	0.00016771	0.26622	0.00011973	0.63912	0.00028744	449.753171244282	53.247	0.4993	52.988	52.763	53.262	-0.25838					21	12	2	0	0	0	0.03519	1	5551	5551		37.159	3.6435	1	254750			20892	16194	14417	14450	23985	23985					0.03913498380427427
GQGSKLFLLL	10	Unmodified	_GQGSKLFLLL_					0	0	0			REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3255004882812	2	538.329142	1074.64373	-0.74783	-0.00040258	-3.1387	-0.0016897	-3.8866	-0.0020923	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.0992	1	12499	12499		32.812	2.3088	1	21993000	+		20893	22631	14418	14451	23986	23986					0.10939479408125408
GQGTGSRVQ	9	Unmodified	_GQGTGSRVQ_					0	0	0		ENST00000479237.5_1_9:131770965-131773053:-|nuORF	ENST00000479237.5_1_9:131770965-131773053:-|nuORF	ENST00000479237.5_1_9:131770965-131773053:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.7457275390625	2	445.227948	888.441343	2.1849	0.00097276	-1.8452	-0.00082154	0.33964	0.00015122	445.2269856618874	24.316	0.79067	24.136	23.671	24.461	-0.18089					28	17	2	0	0	0	0.024209	1	1059	1059		24.519	0	1	112170			20894	15168	14419	14452	23987	23987					-0.007340309445680759
GQGTPGLRVK	10	Unmodified	_GQGTPGLRVK_					0	0	0			REV__ENST00000468978.2_1_1:155159604-155160306:-|nuORF	REV__ENST00000468978.2_1_1:155159604-155160306:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2662658691406	2	506.79854	1011.58253	-0.10096	-5.1164E-05	3.3798	0.0017129	3.2789	0.0016617	506.8004065079961	53.519	0.7122	53.26	52.961	53.674	-0.25838					62	19	4	0	0	0	0.03519	1	5574	5574		17.468	0.75062	1	1552800	+		20895	33119	14420	14453	23988	23988					0.07719967428704422
GQGTRRLHLL	10	Unmodified	_GQGTRRLHLL_					0	0	0			REV__ENST00000400454.5_1_21:41414428-41416141:-|nuORF	REV__ENST00000400454.5_1_21:41414428-41416141:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8431396484375	2	575.843813	1149.67307	-0.51071	-0.00029409	-0.999	-0.00057527	-1.5097	-0.00086936	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	1.0719	1	10979	10979		36.447	3.6343	1	2085600	+		20896	31851	14421	14454	23989	23989					0.10422436476983421
GQGVHPGPL	9	Unmodified	_GQGVHPGPL_					0	0	0		ENST00000510506.5_1_4:3948559-3952929:-|nuORF	ENST00000510506.5_1_4:3948559-3952929:-|nuORF	ENST00000510506.5_1_4:3948559-3952929:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.6985778808594	2	431.232502	860.450451	-0.57753	-0.00024905	0.79959	0.00034481	0.22206	9.5759E-05	431.23261632158085	32.93	0.23016	32.937	32.813	33.043	0.0066223					8	5	2	0	0	0	0.024183	1	2318	2318		31.955	0	1	43993			20897	15823	14422	14455	23990	23990					0.014643624117638865
GQHGGYEI	8	Unmodified	_GQHGGYEI_					0	0	0		ENST00000534023.1_1_11:66029401-66030508:+|nuORF;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000174996|Q9H0B6-2|KLC2	ENST00000534023.1_1_11:66029401-66030508:+|nuORF	ENST00000534023.1_1_11:66029401-66030508:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.6986389160156	2	430.698492	859.382431	0.37146	0.00015999	-0.27827	-0.00011985	0.093193	4.0138E-05	430.6982899602663	32.636	0.86105	32.699	32.39	33.251	0.062885					62	22	4	0	0	0	0.68535	1	2239	2239		68.485	8.1907	1	2369200			20898	8520	14423	14456	23991	23991					-0.05288507238913098
GQHKDAYQV	9	Unmodified	_GQHKDAYQV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2569580078125	2	523.256705	1044.49886	-0.98578	-0.00051582	2.3378	0.0012233	1.352	0.00070745	523.2578764480814	22.826	1.3941	22.826	21.771	23.165	0					114	29	5	0	0	0	0.22902	2	851	841;851		85.161	33.968	1	2618300			20899	7517	14424	14457	23992;23993	23993					-0.021611887390236006
GQHKDAYQV	9	Unmodified	_GQHKDAYQV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2567138671875	2	523.256705	1044.49886	-0.52984	-0.00027724	1.3309	0.0006964	0.80105	0.00041916	523.2573682011821	22.883	1.5005	22.822	21.807	23.308	-0.06086					102	32	5	0	0	0	0.30449	1	836	836		75.043	19.539	1	2616500			20900	7517	14424	14457	23994	23994					-0.021611887390236006
GQHLGRKKLN	10	Unmodified	_GQHLGRKKLN_					0	0	0			REV__ENST00000532128.5_1_16:82033942-82034414:-|nuORF	REV__ENST00000532128.5_1_16:82033942-82034414:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8432006835938	2	575.843813	1149.67307	-1.3777	-0.00079332	0.44506	0.00025628	-0.93261	-0.00053704	575.8439028953667	102.57	0.46593	102.57	102.3	102.77	0					33	10	4	0	0	0	1.1307	1	13142	13142		26.693	1.1189	1	572200	+		20901	34575	14425	14458	23995	23995					0.10422436476983421
GQHLYRPI	8	Unmodified	_GQHLYRPI_					0	0	0			REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2725830078125	2	492.274701	982.534849	-0.41217	-0.0002029	-4.0113	-0.0019746	-4.4234	-0.0021775	492.27291826748143	23.509	1.2729	23.585	23.272	24.545	0.076239					94	28	6	0	0	0	0.85409	1	904	904		54.765	10.648	1	13967000	+		20902	23995	14426	14459	23996	23996					0.04288313228505558
GQHSPKMF	8	Unmodified	_GQHSPKMF_					0	0	0			REV__ENSG00000123505|ENST00000368885|AMD1	REV__ENSG00000123505|ENST00000368885|AMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.7833557128906	2	466.226362	930.438172	1.3763	0.00064166	2.4221	0.0011292	3.7983	0.0017709	466.2273362080554	19.446	0.89051	19.213	18.829	19.72	-0.23345					25	17	2	0	0	0	0.027866	1	442	442		12.207	2.0221	1	34180	+		20903	22702	14427	14460	23997	23997					-0.02982997322931169
GQIDTTDLL	9	Unmodified	_GQIDTTDLL_					0	0	0			REV__OSGIN2-RIPK2|2|fusion	REV__OSGIN2-RIPK2|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2540283203125	2	488.253297	974.492041	1.6337	0.00079766	-1.5788	-0.00077087	0.054872	2.6791E-05	488.2529320878509	82.601	1.2249	82.491	81.842	83.067	-0.11006					78	28	4	0	0	0	0.50848	1	10283	10283		58.782	5.4305	1	1345600	+		20904	21431	14428	14461	23998	23998					0.0037745358977190335
GQIESVRFR	9	Unmodified	_GQIESVRFR_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.2796020507812	2	546.301447	1090.58834	-1.1682	-0.00063817	-3.9553	-0.0021608	-5.1234	-0.0027989	546.2991344718489	29.129	0.5548	29.132	28.796	29.351	0.0031357					20	13	2	0	0	0	0.024466	1	1748	1748		39.253	7.298	1	117230			20905	9744	14429	14462	23999	23999					0.046670659403844184
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.26641845703125	2	485.266207	968.517862	0.15101	7.328E-05	-0.41639	-0.00020206	-0.26538	-0.00012878	485.2659451555265	67.803	1.3091	67.803	67.408	68.717	0					97	33	4	0	0	0	0.03201	3	8099	8088;8099;8111		139.97	37.197	1	14818000			20906	3684	14430	14463	24000;24001;24002	24001					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2662353515625	2	485.266207	968.517862	0.08053	3.9079E-05	-0.31123	-0.00015103	-0.2307	-0.00011195	485.26601739163846	68.128	1.173	67.839	67.388	68.561	-0.28834					89	29	4	0	0	0	0.025498	5	8117	8095;8105;8117;8129;8142		145.16	24.535	1	14027000			20907	3684	14430	14463	24003;24004;24005;24006;24007	24005					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2661437988281	2	485.266207	968.517862	-0.071949	-3.4914E-05	-0.13936	-6.7627E-05	-0.21131	-0.00010254	485.2660903477195	67.889	1.1444	67.908	67.466	68.61	0.018921					93	29	4	0	0	0	0.013065	4	8039	8015;8027;8039;8051		171.53	68.758	1	14393000			20908	3684	14430	14463	24008;24009;24010;24011	24010					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.2663879394531	2	485.266207	968.517862	0.54572	0.00026482	-0.58445	-0.00028361	-0.038733	-1.8796E-05	485.2658146829311	68.204	1.5527	67.949	67.538	69.091	-0.25516					87	37	4	0	0	0	0.071379	3	7882	7857;7868;7882		120.87	46.613	1	3858000			20909	3684	14430	14463	24012;24013;24014	24014					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.26641845703125	2	485.266207	968.517862	0.35623	0.00017287	-0.24065	-0.00011678	0.11558	5.6088E-05	485.2660207751723	68.172	1.0412	67.938	67.555	68.596	-0.23376					54	25	3	0	0	0	0.077175	2	7870	7859;7870		118.74	49.956	1	4444000			20910	3684	14430	14463	24015;24016	24016					0.032343478320512986
GQIEVVPEV	9	Unmodified	_GQIEVVPEV_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2666015625	2	485.266207	968.517862	0.53662	0.0002604	-0.46858	-0.00022738	0.068045	3.302E-05	485.26586198921336	68.116	1.2034	67.878	67.549	68.753	-0.23814					77	29	5	0	0	0	0.10174	2	7865	7842;7865		110.12	24.76	1	4004400			20911	3684	14430	14463	24017;24018	24018					0.032343478320512986
GQIFKPVSI	9	Unmodified	_GQIFKPVSI_					0	0	0		ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENST00000523334.1_1_6:114270238-114277280:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7976379394531	2	494.794935	987.575317	-0.5323	-0.00026338	2.6693	0.0013208	2.137	0.0010574	494.79610510149104	60.893	0.63027	60.687	60.378	61.008	-0.20599					28	15	2	0	0	0	0.02435	1	6836	6836		42.396	8.2236	1	383010			20912	16041	14431	14464	24019	24019					0.08103234828286077
GQIFKPVSI	9	Unmodified	_GQIFKPVSI_					0	0	0		ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENST00000523334.1_1_6:114270238-114277280:-|nuORF	ENST00000523334.1_1_6:114270238-114277280:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.794935	987.575317	-0.52541	-0.00025997	3.7764	0.0018685	3.251	0.0016086	494.79667266392687	60.667	0.55903	60.667	60.437	60.996	0	-0.016972	-9.9687E-05	NaN	26.693	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	998940			20913	16041	14431	14464							0.08103234828286077
GQIKEVERI	9	Unmodified	_GQIKEVERI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3116455078125	2	536.31148	1070.60841	-0.83248	-0.00044647	0.29549	0.00015848	-0.53698	-0.00028799	536.3116314755077	34.496	0.77756	34.496	34.129	34.906	0					56	19	4	0	0	0	0.079716	3	2575	2565;2575;2586		117.81	24.213	1	7402300			20914	456;1424	14432	14465	24020;24021;24022	24021					0.07592816880332975
GQIKEVERI	9	Unmodified	_GQIKEVERI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3117065429688	2	536.31148	1070.60841	-0.48711	-0.00026124	-0.15658	-8.3978E-05	-0.64369	-0.00034522	536.3114068395985	34.284	0.74289	34.28	33.948	34.691	-0.0045624					60	18	5	0	0	0	0.016542	2	2523	2523;2534		154.12	38.624	1	7534300			20915	456;1424	14432	14465	24023;24024	24023					0.07592816880332975
GQIKEVERI	9	Unmodified	_GQIKEVERI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3115844726562	2	536.31148	1070.60841	-1.4846	-0.00079618	0.96723	0.00051874	-0.51732	-0.00027745	536.3119709512937	34.334	0.71477	34.384	34.047	34.762	0.050255					62	17	5	0	0	0	0.03666	2	2485	2485;2496		136.27	31.522	1	6416100			20916	456;1424	14432	14465	24025;24026	24025					0.07592816880332975
GQIKIWEV	8	Unmodified	_GQIKIWEV_					0	0	0		nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7786865234375	2	486.779285	971.544017	-0.98076	-0.00047741	-0.41771	-0.00020333	-1.3985	-0.00068075	486.77898685505664	62.585	0.95209	62.585	62.313	63.265	0					51	25	3	0	0	0	0.11227	3	7296	7267;7283;7296		157.21	18.513	1	7180200			20917	8674	14433	14466	24027;24028;24029	24029					0.057106617941940385
GQIKIWEV	8	Unmodified	_GQIKIWEV_					0	0	0		nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7774658203125	2	486.779285	971.544017	-1.2145	-0.0005912	-0.30272	-0.00014736	-1.5172	-0.00073855	486.7789925815726	62.792	0.94696	62.552	62.293	63.24	-0.23926					52	25	3	0	0	0	0.11227	3	7271	7261;7271;7291		157.21	14.102	1	6715000			20918	8674	14433	14466	24030;24031;24032	24031					0.057106617941940385
GQIKIWEV	8	Unmodified	_GQIKIWEV_					0	0	0		nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7781677246094	2	486.779285	971.544017	-0.83166	-0.00040484	-0.48624	-0.00023669	-1.3179	-0.00064153	486.7789468978716	62.482	1.0455	62.545	62.301	63.347	0.062767					58	26	3	0	0	0	0.18427	4	7193	7172;7181;7193;7205		143.11	17.529	1	6456200			20919	8674	14433	14466	24033;24034;24035;24036	24035					0.057106617941940385
GQIKQIIRI	9	Unmodified	_GQIKQIIRI_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.8472900390625	2	534.848033	1067.68151	-0.67995	-0.00036367	-0.17281	-9.2426E-05	-0.85276	-0.0004561	534.8479431611992	47.307	0.84037	47.307	47.003	47.843	0					56	24	4	0	0	0	0.20967	1	4733	4733		87.754	5.5138	1	2535100			20920	9914	14434	14467	24037	24037					0.1503799039360274
GQIKQIIRI	9	Unmodified	_GQIKQIIRI_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.848033	1067.68151	-0.24337	-0.00013016	-0.55517	-0.00029693	-0.79854	-0.0004271	534.847713604757	47.476	1.0725	47.323	47.052	48.125	-0.15301	-0.00031304	-0.00041108	NaN	87.754	62	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2168100			20921	9914	14434	14467							0.1503799039360274
GQIKQIIRI	9	Unmodified	_GQIKQIIRI_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.848033	1067.68151	-1.2875	-0.00068864	0.44338	0.00023714	-0.84416	-0.0004515	534.8482305943111	47.281	0.79304	47.34	47.069	47.862	0.059097	0.016609	0.00065707	NaN	87.754	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2260300			20922	9914	14434	14467							0.1503799039360274
GQINQKLGV	9	Unmodified	_GQINQKLGV_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7798767089844	2	478.779816	955.545079	-0.61524	-0.00029456	0.68677	0.00032881	0.071529	3.4247E-05	478.78003254950266	40.422	0.85672	40.445	39.84	40.696	0.023003					41	23	3	0	0	0	0.072054	1	3500	3500		120.62	40.908	1	2673600			20923	3841	14435	14468	24038	24038					0.0655287616308442
GQIQNESLD	9	Unmodified	_GQIQNESLD_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7790832519531	2	502.238178	1002.4618	-0.85123	-0.00042752	1.5071	0.00075693	0.6559	0.00032942	502.238818254344	45.045	1.0246	44.896	44.523	45.547	-0.1488					55	29	3	0	0	0	0.024209	1	4409	4409		39.253	0	1	1747400	+		20924	27660	14436	14469	24039	24039					-0.03932905075430426
GQIRGYQV	8	Unmodified	_GQIRGYQV_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MSMS	OPSCC_39_ClassI_Rep-1	1	460.7505187988281	2	460.751059	919.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.109	1	38.109	37.609	38.609	0								0	0	0	0.34253	1	3170	3170		88.643	22.84	1				20925	5598;2675;6354	14437	14470	24040	24040					0.0246003395752723
GQIRGYQV	8	Unmodified	_GQIRGYQV_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MSMS	OPSCC_39_ClassI_Rep-1	1	460.75018310546875	2	460.751059	919.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.165	1	38.165	37.665	38.665	0								0	0	0	0.34253	1	3181	3181		88.643	22.84	1				20926	5598;2675;6354	14437	14470	24041	24041					0.0246003395752723
GQIRGYQV	8	Unmodified	_GQIRGYQV_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.7500915527344	2	460.751059	919.487565	-0.9534	-0.00043928	-0.3109	-0.00014325	-1.2643	-0.00058253	460.75067881761635	38.018	0.57886	37.935	37.57	38.149	-0.082516					40	16	3	0	0	0	0.46709	2	3129	3129;3147		88.643	22.84	1	4473300			20927	5598;2675;6354	14437	14470	24042;24043	24042					0.0246003395752723
GQIRGYQV	8	Unmodified	_GQIRGYQV_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.7496032714844	2	460.751059	919.487565	-1.1788	-0.00054313	0.12484	5.7518E-05	-1.054	-0.00048561	460.7509312873695	38.217	0.57737	38.245	37.918	38.496	0.027275					41	16	3	0	0	0	0.59392	2	3127	3127;3140		76.847	19.035	1	4223400			20928	5598;2675;6354	14437	14470	24044;24045	24044					0.0246003395752723
GQIRIWHS	8	Unmodified	_GQIRIWHS_					0	0	0			REV__ENST00000331457.8_1_22:31830005-31830233:+|nuORF	REV__ENST00000331457.8_1_22:31830005-31830233:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7883605957031	2	498.772326	995.530098	-0.47793	-0.00023838	3.4849	0.0017382	3.0069	0.0014998	498.7741146964271	21.625	0.23275	21.625	21.491	21.723	0					7	4	2	0	0	0	0.027866	1	673	673		30.504	0	1	9477.9	+		20929	30476	14438	14471	24046	24046					0.03215429085753385
GQISETLKT	9	Unmodified	_GQISETLKT_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.76837158203125	2	488.769114	975.523675	-0.22451	-0.00010973	-0.31897	-0.0001559	-0.54348	-0.00026564	488.76885154067844	37.542	0.80191	37.542	37.269	38.071	0					53	22	3	0	0	0	0.087669	1	3073	3073		114.89	35.444	1	4080400			20930	6538	14439	14472	24047	24047					0.034934463437252816
GQISETLKT	9	Unmodified	_GQISETLKT_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7681579589844	2	488.769114	975.523675	-0.4386	-0.00021438	-0.2645	-0.00012928	-0.7031	-0.00034365	488.7688805645628	37.413	0.74119	37.35	37.091	37.832	-0.063389					55	20	3	0	0	0	0.15388	1	3039	3039		98.582	19.131	1	3603900			20931	6538	14439	14472	24048	24048					0.034934463437252816
GQISETLKT	9	Unmodified	_GQISETLKT_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7689208984375	2	488.769114	975.523675	-0.57504	-0.00028106	0.037033	1.81E-05	-0.53801	-0.00026296	488.76898170763815	37.538	0.87066	37.571	37.226	38.097	0.032269					54	23	3	0	0	0	0.087669	2	3018	3018;3031		114.89	48.465	1	3752800			20932	6538	14439	14472	24049;24050	24049					0.034934463437252816
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2685852050781	2	465.26875	928.522947	0.30634	0.00014253	-0.38298	-0.00017819	-0.076647	-3.5661E-05	465.2685447830213	66.048	0.66651	66.048	65.681	66.348	0					46	18	4	0	0	0	0.015901	5	7842	7832;7842;7853;7865;7877		157.33	40.425	1	13733000			20933	2077	14440	14473	24051;24052;24053;24054;24055	24052					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.268798828125	2	465.26875	928.522947	-0.079	-3.6756E-05	-0.039001	-1.8146E-05	-0.118	-5.4902E-05	465.2687033618373	66.397	0.63419	66.115	65.75	66.384	-0.28149					50	18	5	0	0	0	0.015901	4	7877	7855;7865;7877;7891		157.33	31.515	1	12796000			20934	2077	14440	14473	24056;24057;24058;24059	24058					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2682800292969	2	465.26875	928.522947	0.54205	0.0002522	-0.76513	-0.00035599	-0.22308	-0.00010379	465.26837038416454	66.032	1.6581	66.062	65.737	67.396	0.030098					76	44	5	0	0	0	0.014988	4	7781	7759;7769;7781;7793		161.9	44.995	1	15638000			20935	2077	14440	14473	24060;24061;24062;24063	24062					0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.26875	928.522947	-0.13983	-6.5057E-05	-0.36643	-0.00017049	-0.50625	-0.00023554	465.2688609144344	66.425	0.46772	66.176	65.9	66.368	-0.2484	0.05752	-0.00013741	NaN	161.9	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196680			20936	2077	14440	14473							0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.26875	928.522947	-0.54531	-0.00025372	0.74346	0.00034591	0.19815	9.2191E-05	465.26907878824835	66.425	0.4632	66.202	65.905	66.368	-0.22374	0.083069	0.00089538	NaN	161.9	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225270			20937	2077	14440	14473							0.05582651694669494
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.26875	928.522947	-0.53026	-0.00024671	0.6123	0.00028488	0.082046	3.8173E-05	465.26896221801746	66.354	0.5791	66.108	65.772	66.351	-0.24517	-0.0102	0.00077334	NaN	161.9	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272070			20938	2077	14440	14473							0.05582651694669494
GQITGDLLIL	10	Unmodified	_GQITGDLLIL_					0	0	0			REV__nc|ENSG00000127249|Q4VNC1-3|ATP13A4	REV__nc|ENSG00000127249|Q4VNC1-3|ATP13A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8341674804688	2	521.810782	1041.60701	0.38994	0.00020347	-1.0651	-0.00055577	-0.67514	-0.00035229	521.8101400311319	69.704	0.46745	69.411	69.166	69.633	-0.29291					24	11	3	0	0	0	0.03519	1	8337	8337		46.457	0	1	207490	+		20939	22923	14441	14474	24064	24064					0.08787182791570558
GQKEGEPRI	9	Unmodified	_GQKEGEPRI_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;PLS3|p.D322N|1|0.31|ENSG00000102024|chrX:115640480-115640480|G/A|missense_variant	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2723388671875	2	507.272355	1012.53016	-1.2409	-0.0006295	0.84175	0.000427	-0.39919	-0.0002025	507.27272298393655	24.467	1.3252	24.42	24.177	25.502	-0.047148					61	30	4	0	0	0	0.26413	1	1072	1072		80.455	3.137	1	1905700			20940	2372	14442	14475	24065	24065					0.024393842950985345
GQKEQPGAL	9	Unmodified	_GQKEQPGAL_					0	0	0		ENST00000554503.5_1_12:57629544-57630899:-|nuORF	ENST00000554503.5_1_12:57629544-57630899:-|nuORF	ENST00000554503.5_1_12:57629544-57630899:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2506408691406	2	464.248349	926.482145	-0.5528	-0.00025664	4.2493	0.0019727	3.6965	0.0017161	464.2503727572614	48.083	2.0265	47.93	47.606	49.632	-0.15301					205	57	6	0	0	0	0.18915	1	4892	4892		90.777	3.0224	1	130920000			20941	16659	14443	14476	24066	24066					0.01596310375032317
GQKKGPGLAV	10	Unmodified	_GQKKGPGLAV_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.8033447265625	2	477.790184	953.565815	0.56337	0.00026917	-0.80993	-0.00038698	-0.24656	-0.0001178	477.78974311967767	52.819	0.96459	52.672	52.021	52.985	-0.14723					46	24	3	0	0	0	0.03519	1	5615	5615		34.173	0	1	316360			20942	10756	14444	14477	24067	24067					0.08717466542748298
GQKKVCKVE	9	Unmodified	_GQKKVCKVE_					0	0	0		ENST00000412878.2_1_10:53079965-53080385:+|nuORF	ENST00000412878.2_1_10:53079965-53080385:+|nuORF	ENST00000412878.2_1_10:53079965-53080385:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.74932861328125	2	509.789327	1017.5641	-1.3292	-0.00067762	-2.0589	-0.0010496	-3.3881	-0.0017272	509.7881082447466	30.572	0.7449	30.572	30.258	31.003	0					44	17	3	0	0	0	0.02435	1	1929	1929		42.396	1.618	1	494620			20943	13829	14445	14478	24068	24068					0.05602089462490767
GQKPVILTYA	10	Unmodified	_GQKPVILTYA_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2764282226562	2	545.318774	1088.623	-0.7532	-0.00041073	2.1589	0.0011773	1.4057	0.00076655	545.3206194643952	78.392	0.87036	78.392	78.122	78.993	0					51	20	4	0	0	0	0.03519	1	9675	9675		69.628	14.863	1	334440			20944	6282	14446	14479	24069	24069					0.08222889028456848
GQKPVILTYA	10	Unmodified	_GQKPVILTYA_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2750854492188	2	545.318774	1088.623	-0.31776	-0.00017328	-1.7703	-0.00096537	-2.088	-0.0011387	545.3179929133395	77.718	0.45726	77.507	77.247	77.705	-0.21088					15	10	2	0	0	0	0.03519	1	9561	9561		116.9	33.616	1	167130			20945	6282	14446	14479	24070	24070					0.08222889028456848
GQKRKVAPK	9	Unmodified	_GQKRKVAPK_					0	0	0		ENSG00000177143|ENST00000327228|CETN1	ENSG00000177143|ENST00000327228|CETN1	ENSG00000177143|ENST00000327228|CETN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7565612792969	2	506.324725	1010.6349	-1.4209	-0.00071943	1.0509	0.00053209	-0.37	-0.00018734	506.32523937646107	38.15	0.39191	38.15	38.003	38.395	0					18	11	2	0	0	0	0.024477	1	3201	3201		20.947	0	1	721340			20946	8712	14447	14480	24071	24071					0.1300055056231031
GQKRKVAPK	9	Unmodified	_GQKRKVAPK_					0	0	0		ENSG00000177143|ENST00000327228|CETN1	ENSG00000177143|ENST00000327228|CETN1	ENSG00000177143|ENST00000327228|CETN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7566833496094	2	506.324725	1010.6349	-1.695	-0.00085822	2.2908	0.0011599	0.59584	0.00030169	506.3261480348544	38.273	0.56475	38.3	38.127	38.691	0.027279					33	15	3	0	0	0	0.024506	1	3164	3164		16.473	0	1	531300			20947	8712	14447	14480	24072	24072					0.1300055056231031
GQLAAIKV	8	Unmodified	_GQLAAIKV_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.25579833984375	2	400.255446	798.496338	0.90522	0.00036232	-0.5941	-0.00023779	0.31112	0.00012453	400.25506541729476	47.837	1.019	47.837	47.497	48.516	0					57	30	3	0	0	0	0.1848	1	4834	4834		143.02	14.158	1	2611700			20948	6402;1444;5499	14448	14481	24073	24073					0.08903007593983148
GQLAEDLRSA	10	Unmodified	_GQLAEDLRSA_					0	0	0			REV__ENSG00000135637|ENST00000393965|CCDC142	REV__ENSG00000135637|ENST00000393965|CCDC142	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7928466796875	2	530.275095	1058.53564	-0.61774	-0.00032757	-0.25322	-0.00013428	-0.87096	-0.00046185	531.2770415528549	24.945	1.0308	24.77	24.129	25.159	-0.17484					45	23	3	0	0	0	0.03519	1	1081	1081		36.447	0	1	130670	+		20949	23565	14449	14482	24074	24074					0.008710630869018132
GQLAGTAAVLP	11	Unmodified	_GQLAGTAAVLP_					0	0	0			REV__ENST00000583121.5_3_17:27717493-27778530:+|nuORF	REV__ENST00000583121.5_3_17:27717493-27778530:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80364990234375	2	499.287474	996.560395	-0.45698	-0.00022816	0.51272	0.000256	0.055742	2.7831E-05	499.28740574482936	53.547	0.8769	53.642	53.127	54.004	0.095669					46	24	3	0	0	0	0.024778	1	5640	5640		36.447	3.6343	1	1069300	+		20950	35549	14450	14483	24075	24075					0.061977429602734446
GQLDVRELI	9	Unmodified	_GQLDVRELI_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MSMS	OPSCC_39_ClassI_Rep-2	2	521.7966918945312	2	521.798206	1041.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.128	1	68.836	68.336	69.336	-0.29267								0	0	0	0.3705	1	8277	8277		63.534	0	1				20951	4960	14451	14484	24076	24076					0.06273127989015848
GQLKGFAV	8	Unmodified	_GQLKGFAV_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.23974609375	2	410.239796	818.465038	0.50504	0.00020719	-0.25567	-0.00010489	0.24937	0.0001023	410.2395397792441	47.902	0.82656	47.902	47.622	48.448	0					63	24	4	0	0	0	0.56067	1	4846	4846		79.939	11.455	1	3025400			20952	6896	14452	14485	24077	24077					0.04854434559888432
GQLKGFAV	8	Unmodified	_GQLKGFAV_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.2392578125	2	410.239796	818.465038	-0.065965	-2.7061E-05	0.3061	0.00012558	0.24014	9.8515E-05	410.2397879226182	47.994	1.2903	47.841	47.574	48.864	-0.15301					74	37	3	0	0	0	0.46709	2	4841	4841;4852		88.643	17.888	1	3329600			20953	6896	14452	14485	24078;24079	24078					0.04854434559888432
GQLKGFAV	8	Unmodified	_GQLKGFAV_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.2408447265625	2	410.239796	818.465038	0.14915	6.1187E-05	0.20994	8.6125E-05	0.35909	0.00014731	410.2397208109703	47.758	1.2378	47.817	47.554	48.792	0.059097					60	35	3	0	0	0	0.46709	2	4766	4766;4778		88.643	25.664	1	3381000			20954	6896	14452	14485	24080;24081	24080					0.04854434559888432
GQLKQVYRA	9	Unmodified	_GQLKQVYRA_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.267333984375	2	531.806365	1061.59818	-0.91661	-0.00048746	1.4022	0.00074571	0.48561	0.00025825	531.8065216375708	23.003	0.82562	22.818	22.281	23.107	-0.18539					40	17	5	0	0	0	0.024457	1	897	897		21.96	0	1	97939			20955	6575	14453	14486	24082	24082					0.06984253945756791
GQLKSLTI	8	Unmodified	_GQLKSLTI_					0	0	0		ENST00000526843.2_1_11:127810827-127810962:-|nuORF;ENST00000485817.1_1_3:125062955-125063264:-|nuORF;ENST00000487480.1_1_7:157174896-157178337:+|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.2658996582031	2	430.26601	858.517468	-0.5254	-0.00022606	0.25621	0.00011024	-0.26919	-0.00011583	430.26613061274514	48.43	1.7729	48.43	48.105	49.878	0					124	49	5	0	0	0	0.15677	2	4945	4923;4945		147.69	5.162	1	22412000			20956	2745	14454	14487	24083;24084	24084					0.08254972902852842
GQLKSLTI	8	Unmodified	_GQLKSLTI_					0	0	0		ENST00000526843.2_1_11:127810827-127810962:-|nuORF;ENST00000485817.1_1_3:125062955-125063264:-|nuORF;ENST00000487480.1_1_7:157174896-157178337:+|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.2661437988281	2	430.26601	858.517468	-0.43437	-0.0001869	0.33566	0.00014442	-0.098719	-4.2475E-05	430.2661537896907	48.602	1.6542	48.45	48.125	49.779	-0.15277					117	45	5	0	0	0	0.07768	4	4924	4924;4933;4945;4957		166.78	23.763	1	19681000			20957	2745	14454	14487	24085;24086;24087;24088	24085					0.08254972902852842
GQLKSLTI	8	Unmodified	_GQLKSLTI_					0	0	0		ENST00000526843.2_1_11:127810827-127810962:-|nuORF;ENST00000485817.1_1_3:125062955-125063264:-|nuORF;ENST00000487480.1_1_7:157174896-157178337:+|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	ENST00000526843.2_1_11:127810827-127810962:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.2659912109375	2	430.26601	858.517468	0.029274	1.2595E-05	-0.28078	-0.00012081	-0.25151	-0.00010821	430.26588262723646	48.369	1.5648	48.436	48.043	49.608	0.066795					100	42	4	0	0	0	0.24001	4	4838	4838;4846;4858;4870		133.81	5.162	1	20086000			20958	2745	14454	14487	24089;24090;24091;24092	24089					0.08254972902852842
GQLKSVTI	8	Unmodified	_GQLKSVTI_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2582092285156	2	423.258185	844.501818	-0.016109	-6.8184E-06	0.5244	0.00022196	0.50829	0.00021514	423.25832798208506	41.902	1.0267	41.902	41.579	42.605	0					86	29	5	0	0	0	0.18427	4	3784	3784;3796;3805;3818		143.11	14.246	1	10577000			20959	4952	14455	14488	24093;24094;24095;24096	24093					0.07334686385820532
GQLKSVTI	8	Unmodified	_GQLKSVTI_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.2583312988281	2	423.258185	844.501818	-0.32584	-0.00013792	0.69447	0.00029394	0.36863	0.00015602	423.25842344230796	42.037	1.0356	41.905	41.603	42.638	-0.13219					83	29	5	0	0	0	0.18427	4	3811	3791;3799;3811;3825		143.11	27.648	1	11798000			20960	4952	14455	14488	24097;24098;24099;24100	24099					0.07334686385820532
GQLKSVTI	8	Unmodified	_GQLKSVTI_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.2583923339844	2	423.258185	844.501818	0.16125	6.8249E-05	0.38566	0.00016323	0.5469	0.00023148	423.2582784206109	41.995	0.97091	42.021	41.709	42.68	0.026012					76	27	5	0	0	0	0.11227	5	3757	3746;3757;3769;3780;3794		157.21	14.246	1	10149000			20961	4952	14455	14488	24101;24102;24103;24104;24105	24102					0.07334686385820532
GQLKSVTI	8	Unmodified	_GQLKSVTI_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	423.258185	844.501818	0.066202	2.8021E-05	4.3768	0.0018525	4.443	0.0018806	423.25833530038966	42.114	0.1883	41.991	41.888	42.076	-0.12299	0.03632	0.0028475	NaN	157.21	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52964			20962	4952	14455	14488							0.07334686385820532
GQLLAVVAE	9	Unmodified	_GQLLAVVAE_					0	0	0			REV__ENSG00000180900|ENST00000356994|SCRIB	REV__ENSG00000180900|ENST00000356994|SCRIB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2816162109375	2	450.263468	898.512382	-0.88481	-0.0003984	1.6712	0.0007525	0.78643	0.0003541	450.26347013992813	51.646	0.38858	51.376	51.085	51.473	-0.26975					15	9	3	0	0	0	0.024209	1	5274	5274		66.429	18.772	1	74906	+		20963	27370	14456	14489	24106	24106					0.05906669040234647
GQLNKWDP	8	Unmodified	_GQLNKWDP_					0	0	0			REV__ENST00000240333.10_1_17:47785368-47785530:-|nuORF	REV__ENST00000240333.10_1_17:47785368-47785530:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2436828613281	2	479.243067	956.47158	-0.55613	-0.00026652	0.65268	0.00031279	0.096549	4.6271E-05	479.24329504991545	40.535	0.95421	40.558	40.051	41.005	0.023003					70	26	4	0	0	0	0.80469	1	3511	3511		58.782	2.0609	1	3071500	+		20964	29448	14457	14490	24107	24107					-0.008396722793918343
GQLPEAPVI	9	Unmodified	_GQLPEAPVI_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENST00000463920.5_1_1:154574717-154600435:-|nuORF	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2635498046875	2	462.263468	922.512382	0.29605	0.00013685	0.011122	5.1413E-06	0.30717	0.00014199	462.26331931566097	68.981	1.0602	68.688	68.326	69.387	-0.29267					63	27	4	0	0	0	0.021872	1	8264	8264		148.04	60.289	1	2283700			20965	6833	14458	14491	24108	24108					0.04802669040236651
GQLPEAPVI	9	Unmodified	_GQLPEAPVI_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENST00000463920.5_1_1:154574717-154600435:-|nuORF	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.263468	922.512382	0.67296	0.00031109	-0.45115	-0.00020855	0.22182	0.00010254	462.2630877383576	68.649	0.93034	68.668	68.353	69.284	0.018921	0.0090061	-0.00040665	NaN	148.04	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2735800			20966	6833	14458	14491							0.04802669040236651
GQLPITIQV	9	Unmodified	_GQLPITIQV_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;ENST00000514990.1_1_3:129288623-129290035:-|nuORF	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.792724609375	2	484.792392	967.570232	-0.34176	-0.00016568	1.1644	0.00056448	0.8226	0.00039879	484.79273286140625	79.308	0.75097	79.308	79.035	79.786	0					34	17	3	0	0	0	0.18994	1	9838	9838		90.601	20.973	1	1056400			20967	738	14459	14492	24109	24109					0.08514930965657186
GQLPITIQV	9	Unmodified	_GQLPITIQV_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;ENST00000514990.1_1_3:129288623-129290035:-|nuORF	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7920837402344	2	484.792392	967.570232	-1.0215	-0.0004952	1.7431	0.00084504	0.72162	0.00034984	484.79308867330553	79.503	0.79337	79.33	78.986	79.78	-0.17225					36	18	3	0	0	0	0.1158	2	9833	9821;9833		107.01	19.311	1	1006300			20968	738	14459	14492	24110;24111	24111					0.08514930965657186
GQLPITIQV	9	Unmodified	_GQLPITIQV_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;ENST00000514990.1_1_3:129288623-129290035:-|nuORF	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7925109863281	2	484.792392	967.570232	-0.43307	-0.00020995	1.1518	0.00055839	0.71874	0.00034844	484.7927989179561	79.365	0.82442	79.384	79.028	79.853	0.018677					39	19	3	0	0	0	0.11727	1	9769	9769		106.68	33.804	1	951470			20969	738	14459	14492	24112	24112					0.08514930965657186
GQLPKQKT	8	Unmodified	_GQLPKQKT_					0	0	0		ENSG00000283039|ENST00000634670|KLF18	ENSG00000283039|ENST00000634670|KLF18	ENSG00000283039|ENST00000634670|KLF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7432556152344	2	450.269084	898.523616	-0.11385	-5.1264E-05	0.3027	0.0001363	0.18885	8.5033E-05	450.26916057017706	27.197	0.93738	27.197	26.867	27.804	0					36	24	3	0	0	0	0.027866	1	1490	1490		23.042	0	1	241990			20970	11086	14460	14493	24113	24113					0.07029491134380805
GQLPLNNTL	9	Unmodified	_GQLPLNNTL_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2717590332031	2	485.271824	968.529095	-0.0045759	-2.2205E-06	-0.17673	-8.5762E-05	-0.18131	-8.7983E-05	485.27171900558386	64.001	1.2522	63.75	63.372	64.624	-0.25141					79	33	4	0	0	0	0.12602	1	7515	7515		104.75	6.1172	1	9102800			20971	9789	14461	14494	24114	24114					0.0435716992617472
GQLPNLQTV	9	Unmodified	_GQLPNLQTV_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2715148925781	2	485.271824	968.529095	1.1984	0.00058153	-1.1972	-0.00058099	0.001112	5.3962E-07	485.2712206192027	63.733	1.0127	63.733	63.41	64.422	0					71	27	4	0	0	0	0.013065	4	7469	7460;7469;7481;7494		221.33	90.295	1	8874800			20972	8314	14462	14495	24115;24116;24117;24118	24116					0.043571699261860886
GQLPNLQTV	9	Unmodified	_GQLPNLQTV_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2719421386719	2	485.271824	968.529095	-0.0045759	-2.2205E-06	-0.17673	-8.5762E-05	-0.18131	-8.7983E-05	485.27171900558386	64.001	1.2522	63.75	63.372	64.624	-0.25141					79	33	4	0	0	0	0.013293	4	7475	7464;7475;7487;7499		205.58	80.22	1	9102800			20973	8314	14462	14495	24119;24120;24121;24122	24120					0.043571699261860886
GQLPNLQTV	9	Unmodified	_GQLPNLQTV_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.27154541015625	2	485.271824	968.529095	1.3287	0.00064479	-1.4878	-0.000722	-0.15911	-7.7209E-05	485.2710589388348	63.728	1.5372	63.782	63.447	64.984	0.054104					88	41	4	0	0	0	0.013065	5	7375	7375;7387;7398;7412;7425		221.33	81.356	1	8979800			20974	8314	14462	14495	24123;24124;24125;24126;24127	24123					0.043571699261860886
GQLPPGKPQI	10	Unmodified	_GQLPPGKPQI_					0	0	0		PRLR|p.E32Q|1|0.23|ENSG00000113494|chr5:35086317-35086317|C/G|missense_variant	PRLR|p.E32Q|1|0.23|ENSG00000113494|chr5:35086317-35086317|C/G|missense_variant	PRLR|p.E32Q|1|0.23|ENSG00000113494|chr5:35086317-35086317|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.780029296875	2	517.803291	1033.59203	-1.4494	-0.00075051	1.5219	0.00078805	0.072501	3.7541E-05	517.8041058816995	51.665	0.38164	51.752	51.544	51.926	0.087009					17	10	2	0	0	0	0.03519	1	5400	5400		32.812	12.816	1	277780			20975	18995	14463	14496	24128	24128					0.07657735714224145
GQLRLAHGV	9	Unmodified	_GQLRLAHGV_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.7799072265625	2	475.780151	949.545748	0.63823	0.00030366	-0.97256	-0.00046272	-0.33433	-0.00015907	475.7795011870535	34.022	0.77079	34.022	33.521	34.292	0					40	19	3	0	0	0	0.40179	1	2499	2499		65.803	28.644	1	1287100			20976	7462	14464	14497	24129	24129					0.06895715602809105
GQLRLAHGV	9	Unmodified	_GQLRLAHGV_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7801513671875	2	475.780151	949.545748	0.19851	9.4446E-05	-0.19288	-9.1768E-05	0.0056284	2.6779E-06	475.77982148816216	33.81	0.66552	33.805	33.486	34.152	-0.0045624					46	16	4	0	0	0	0.43973	1	2464	2464		63.306	29.134	1	1272900			20977	7462	14464	14497	24130	24130					0.06895715602809105
GQLRLAHGV	9	Unmodified	_GQLRLAHGV_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.7801513671875	2	475.780151	949.545748	0.04913	2.3375E-05	-0.42427	-0.00020186	-0.37514	-0.00017848	475.77977775748434	33.812	0.67957	33.868	33.5	34.179	0.056572					40	16	3	0	0	0	0.40179	1	2419	2419		65.803	32.288	1	1045200			20978	7462	14464	14497	24131	24131					0.06895715602809105
GQLSHCGRQCM	11	Unmodified	_GQLSHCGRQCM_					0	0	0			REV__ENST00000526589.5_1_1:236706329-236706884:+|nuORF	REV__ENST00000526589.5_1_1:236706329-236706884:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.5791015625	3	407.175815	1218.50562	0.37791	0.00015388	-3.2781	-0.0013348	-2.9002	-0.0011809	407.17447004261874	34.371	0.26908	34.367	34.261	34.53	-0.0045624					10	6	2	0	0	0	0.024734	1	2537	2537		43.419	13.868	1	55848	+		20979	34451	14465	14498	24132	24132					-0.09489658445932037
GQLVFVVVNNL	11	Unmodified	_GQLVFVVVNNL_					0	0	0			REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF	REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5148620605469	3	401.236163	1200.68666	0.97476	0.00039111	-2.5927	-0.0010403	-1.618	-0.00064919	401.23511065921605	24.156	0.76872	23.981	23.699	24.468	-0.17484					39	17	3	0	0	0	0.024751	1	1048	1048		27.644	0	1	305410	+		20980	19798	14466	14499	24133	24133					0.09434249465562061
GQLVLGPPTQG	11	Unmodified	_GQLVLGPPTQG_					0	0	0			REV__ENST00000598463.5_1_19:51301392-51301476:-|nuORF	REV__ENST00000598463.5_1_19:51301392-51301476:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7738647460938	2	533.798206	1065.58186	-0.20162	-0.00010762	-4.2023	-0.0022432	-4.404	-0.0023508	533.7956887905907	47.731	0.20616	47.544	47.355	47.561	-0.18684					9	5	2	0	0	0	0.024732	1	4665	4665		32.812	0	1	347880	+		20981	35818	14467	14500	24134	24134					0.051691279890064834
GQLYHRVD	8	Unmodified	_GQLYHRVD_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7794189453125	2	494.253966	986.493378	0.6114	0.00030219	-0.031319	-1.548E-05	0.58009	0.00028671	494.253100199769	58.911	0.39362	58.669	58.502	58.895	-0.24165					19	9	3	0	0	0	0.027866	1	6457	6457		42.474	14.592	1	159870	+		20982	27175	14468	14501	24135	24135					-0.00040867530822197295
GQLYSYPAR	9	Unmodified	_GQLYSYPAR_					0	0	0		ENST00000524666.5_1_11:65108438-65113200:+|nuORF;ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;DPF2|p.C327Sfs*52|1|0.22|ENSG00000133884|chr11:65346322-65346322|G/-|frameshift_variant;ENSG00000133884|ENST00000528416|DPF2	ENST00000524666.5_1_11:65108438-65113200:+|nuORF	ENST00000524666.5_1_11:65108438-65113200:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	527.76953125	2	527.769448	1053.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.474	1	53.474	52.974	53.974	0								0	0	0	0.052088	1	5787	5787		108.09	4.0307	1				20983	667	14469	14502	24136	24136					-0.0002771421659417683
GQMLAGGPSL	10	Unmodified	_GQMLAGGPSL_					0	0	0			REV__nc|ENSG00000110768|P32780-2|GTF2H1	REV__nc|ENSG00000110768|P32780-2|GTF2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2686767578125	2	465.739302	929.464052	-0.003417	-1.5914E-06	0.33115	0.00015423	0.32773	0.00015264	465.7391031243913	42.452	0.5058	42.32	41.985	42.491	-0.13219					23	14	2	0	0	0	0.03519	1	3832	3832		60.118	0	1	148110	+		20984	21873	14470	14503	24137	24137					-0.0035014787131331104
GQNGTVQEI	9	Unmodified	_GQNGTVQEI_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2355041503906	2	473.235439	944.456324	0.88668	0.00041961	-1.0416	-0.0004929	-0.15488	-7.3293E-05	473.23490786394325	40.158	1.0937	40.158	39.529	40.623	0					69	30	4	0	0	0	0.071379	2	3518	3505;3518		120.87	15.472	1	5830700			20985	1863	14471	14504	24138;24139	24139					-0.018125838672517602
GQNGTVQEI	9	Unmodified	_GQNGTVQEI_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.23553466796875	2	473.235439	944.456324	0.31492	0.00014903	-0.29871	-0.00014136	0.016207	7.6695E-06	473.2352381512633	40.189	1.1304	40.076	39.534	40.664	-0.11223					65	30	4	0	0	0	0.020687	2	3500	3500;3512		148.99	24.393	1	5695000			20986	1863	14471	14504	24140;24141	24140					-0.018125838672517602
GQNLPIDRG	9	Unmodified	_GQNLPIDRG_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2701110839844	2	485.259248	968.503943	-0.49065	-0.00023809	2.8503	0.0013831	2.3596	0.001145	485.25917098128895	27.324	0.29533	27.311	27.205	27.5	-0.012983					9	7	2	0	0	0	0.024506	1	1463	1463		16.473	0	1	68327	+		20987	27209	14472	14505	24142	24142					0.018431151236200094
GQNPPKKQAGS	11	Unmodified	_GQNPPKKQAGS_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2937622070312	2	556.296362	1110.57817	1.157	0.00064364	0.51385	0.00028585	1.6709	0.00092949	556.2965587112253	107.12	0.65836	107.12	106.81	107.47	0					31	17	2	0	0	0	1.0499	1	13763	13763		25.126	0.92324	1	128400			20988	9547	14473	14506	24143	24143					0.027304582151373324
GQNPTNAEV	9	Unmodified	_GQNPTNAEV_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000198336|ENST00000393450|MYL4;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	465.219788	928.425024	-0.5002	-0.00023271	0.49962	0.00023243	-0.00058348	-2.7145E-07	465.2200044661036	33.992	0.96413	33.992	33.626	34.59	0					70	24	4	0	0	0	0.014738	4	2502	2489;2502;2514;2529		163.15	86.377	1	9145400			20989	1996	14474	14507	24144;24145;24146;24147	24145					-0.0420515690133243
GQNPTNAEV	9	Unmodified	_GQNPTNAEV_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000198336|ENST00000393450|MYL4;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2201232910156	2	465.219788	928.425024	-0.16145	-7.5108E-05	0.12316	5.7298E-05	-0.038283	-1.781E-05	465.21984905341714	33.809	1.1606	33.805	33.449	34.61	-0.0045624					85	29	5	0	0	0	0.056725	3	2461	2450;2461;2474		126.24	54.947	1	8243200			20990	1996	14474	14507	24148;24149;24150	24149					-0.0420515690133243
GQNPTNAEV	9	Unmodified	_GQNPTNAEV_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000198336|ENST00000393450|MYL4;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2196960449219	2	465.219788	928.425024	1.144	0.0005322	-1.4947	-0.00069536	-0.35073	-0.00016317	465.2190976096394	33.311	1.3421	33.368	32.956	34.298	0.056572					108	34	5	0	0	0	0.20652	1	2329	2329		88.177	19.39	1	7455400			20991	1996	14474	14507	24151	24151					-0.0420515690133243
GQNSFSLEL	9	Unmodified	_GQNSFSLEL_					0	0	0		ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000138347|Q86TC9-2|MYPN;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7453918457031	2	497.745639	993.476725	0.26208	0.00013045	-0.703	-0.00034992	-0.44092	-0.00021947	497.7452669093134	74.893	1.2551	74.893	74.551	75.806	0					78	32	4	0	0	0	0.01388	4	9184	9162;9173;9184;9197		180.93	56.275	1	13309000			20992	18259;18260;4331;5229	14475	14508	24152;24153;24154;24155	24154					-0.020274132074405316
GQNSFSLEL	9	Unmodified	_GQNSFSLEL_					0	0	0		ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000138347|Q86TC9-2|MYPN;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.745849609375	2	497.745639	993.476725	-0.12077	-6.0115E-05	-0.41642	-0.00020727	-0.5372	-0.00026739	497.74541931029154	75.143	1.3663	74.899	74.215	75.581	-0.24455					86	34	4	0	0	0	0.014918	5	9189	9166;9177;9189;9201;9216		162.25	55.837	1	12551000			20993	18259;18260;4331;5229	14475	14508	24156;24157;24158;24159;24160	24158					-0.020274132074405316
GQNSFSLEL	9	Unmodified	_GQNSFSLEL_					0	0	0		ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000138347|Q86TC9-2|MYPN;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7460021972656	2	497.745639	993.476725	-0.036967	-1.84E-05	-0.46711	-0.0002325	-0.50408	-0.0002509	497.74539794814336	74.945	1.296	74.956	74.565	75.861	0.010376					82	33	4	0	0	0	0.013293	5	9102	9091;9102;9113;9126;9140		176.09	64.439	1	13691000			20994	18259;18260;4331;5229	14475	14508	24161;24162;24163;24164;24165	24162					-0.020274132074405316
GQPFEVLII	9	Unmodified	_GQPFEVLII_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2945251464844	2	508.294768	1014.57498	-0.23487	-0.00011938	-0.18904	-9.609E-05	-0.42392	-0.00021547	508.2946193496138	94.493	1.0049	94.493	94.088	95.093	0					76	23	4	0	0	0	0.12602	3	12027	12006;12027;12041		104.75	13.97	1	3396100			20995	8846	14476	14509	24166;24167;24168	24167					0.06827815108431423
GQPFEVLII	9	Unmodified	_GQPFEVLII_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2946472167969	2	508.294768	1014.57498	-0.24723	-0.00012566	-0.15891	-8.0772E-05	-0.40613	-0.00020644	508.29463421020023	94.382	0.92532	94.382	94.072	94.997	-0.00022888					67	21	4	0	0	0	0.12602	2	11975	11965;11975		104.75	19.831	1	3317600			20996	8846	14476	14509	24169;24170	24170					0.06827815108431423
GQPFEVLII	9	Unmodified	_GQPFEVLII_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2944030761719	2	508.294768	1014.57498	-0.47055	-0.00023918	0.0071953	3.6573E-06	-0.46336	-0.00023552	508.2947246058536	94.464	1.0537	94.47	94.131	95.185	0.0059891					74	24	4	0	0	0	0.17822	3	11939	11939;11951;11963		93.195	18.033	1	3558700			20997	8846	14476	14509	24171;24172;24173	24171					0.06827815108431423
GQPGDIRNSV	10	Unmodified	_GQPGDIRNSV_					0	0	0			REV__nc|ENSG00000246774|Q6ZST2|COL25A1-DT	REV__nc|ENSG00000246774|Q6ZST2|COL25A1-DT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7682495117188	2	521.767437	1041.52032	-1.1166	-0.00058261	4.2912	0.002239	3.1746	0.0016564	521.7695543372945	55.414	0.783	55.512	55.148	55.931	0.098015					51	20	4	0	0	0	0.83673	1	6066	6066		58.23	0.77727	1	9137700	+		20998	37165	14477	14510	24174	24174					0.0012219628970342455
GQPGPAGPPG	10	Unmodified	_GQPGPAGPPG_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1;ENSG00000171812|ENST00000397799|COL8A2	nc|ENSG00000139219|P02458-1|COL2A1;REV__COL5A3|p.P1048Lfs*96|1|0.28|ENSG00000080573|chr19:9977456-9977456|G/-|frameshift_variant;ENSG00000171812|ENST00000397799|COL8A2	ENSG00000171812|ENST00000397799|COL8A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.7086486816406	2	417.70886	833.403166	0.61519	0.00025697	-1.1267	-0.00047065	-0.51155	-0.00021368	417.7081773554599	98.884	1.0121	98.747	98.277	99.289	-0.13625					37	24	2	0	0	0	1.0781	1	12257	12257		35.618	0	1	237310			20999	5316;19513;8196	14478	14511	24175	24175					-0.020199168592398564
GQPGSVLRV	9	Unmodified	_GQPGSVLRV_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7668762207031	2	456.766709	911.518865	-0.50833	-0.00023219	-0.16316	-7.4525E-05	-0.67149	-0.00030671	456.7666365179349	43.746	1.5356	43.746	42.679	44.215	0					98	42	5	0	0	0	0.11727	6	4124	4091;4100;4112;4124;4136;4147		106.68	20.396	1	18481000			21000	968	14479	14512	24176;24177;24178;24179;24180;24181	24179					0.05956606991605895
GQPGSVLRV	9	Unmodified	_GQPGSVLRV_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.766357421875	2	456.766709	911.518865	-0.7776	-0.00035518	0.14722	6.7247E-05	-0.63038	-0.00028793	456.7667752746705	43.87	2.1021	43.725	42.768	44.87	-0.14471					106	59	4	0	0	0	0.11727	6	4117	4096;4105;4117;4129;4141;4153		106.68	29.365	1	18488000			21001	968	14479	14512	24182;24183;24184;24185;24186;24187	24184					0.05956606991605895
GQPGSVLRV	9	Unmodified	_GQPGSVLRV_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7667541503906	2	456.766709	911.518865	0.17052	7.7886E-05	-0.70161	-0.00032047	-0.5311	-0.00024259	456.7664024861867	43.764	1.9423	43.795	42.974	44.917	0.030827					106	54	5	0	0	0	0.22379	5	4078	4044;4054;4066;4078;4091		85.862	24.171	1	18525000			21002	968	14479	14512	24188;24189;24190;24191;24192	24191					0.05956606991605895
GQPGSVLRV	9	Unmodified	_GQPGSVLRV_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.766709	911.518865	-0.72143	-0.00032953	0.39555	0.00018067	-0.32588	-0.00014885	456.7665794938506	43.607	0.54032	43.37	43.099	43.639	-0.23736	-0.28914	0.00052672	NaN	106.68	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242060			21003	968	14479	14512							0.05956606991605895
GQPIHAEL	8	Unmodified	_GQPIHAEL_					0	0	0		nc|ENSG00000160201|Q01081-2|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF;nc|ENSG00000160201|Q01081-4|U2AF1;ENSG00000160201|ENST00000291552|U2AF1	nc|ENSG00000160201|Q01081-2|U2AF1	nc|ENSG00000160201|Q01081-2|U2AF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.731689453125	2	432.732335	863.450116	0.94554	0.00040916	-2.2002	-0.00095211	-1.2547	-0.00054294	432.7313165592402	98.51	1.8019	98.507	97.893	99.695	-0.0026855					100	41	3	0	0	0	0.99042	1	12568	12568		38.806	3.1879	1	3032200			21004	18423	14480	14513	24193	24193					0.01292942691884491
GQPIHAEL	8	Unmodified	_GQPIHAEL_					0	0	0		nc|ENSG00000160201|Q01081-2|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF;nc|ENSG00000160201|Q01081-4|U2AF1;ENSG00000160201|ENST00000291552|U2AF1	nc|ENSG00000160201|Q01081-2|U2AF1	nc|ENSG00000160201|Q01081-2|U2AF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.73162841796875	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	0.845	1	12331	12331		55.504	16.698	1	1517800			21005	18423	14480	14513	24194	24194					0.01292942691884491
GQPKWSPL	8	Unmodified	_GQPKWSPL_					0	0	0			REV__ENST00000461200.5_1_11:2323274-2335767:+|nuORF	REV__ENST00000461200.5_1_11:2323274-2335767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	456.750527	911.486502	-0.16284	-7.4376E-05	-2.8046	-0.001281	-2.9675	-0.0013554	456.74867779379616	24.866	0.92053	24.866	24.253	25.173	0					30	20	3	0	0	0	0.027866	1	1089	1089		25.45	0	1	104260	+		21006	32870	14481	14514	24195	24195					0.027218195886121066
GQPKWSPL	8	Unmodified	_GQPKWSPL_					0	0	0			REV__ENST00000461200.5_1_11:2323274-2335767:+|nuORF	REV__ENST00000461200.5_1_11:2323274-2335767:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.750527	911.486502	0.51011	0.00023299	-3.8886	-0.0017761	-3.3785	-0.0015431	456.7483754661481	24.8	1.0179	24.878	24.275	25.293	0.078344	0.01349	-0.00084924	NaN	25.45	41	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106950	+		21007	32870	14481	14514							0.027218195886121066
GQPLAGEEV	9	Unmodified	_GQPLAGEEV_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7432556152344	2	450.227082	898.439611	-0.26051	-0.00011729	-1.1869	-0.00053439	-1.4474	-0.00065168	450.2238870937917	27.545	0.48139	27.545	27.323	27.804	0					23	12	3	0	0	0	0.024436	1	1490	1490		30.504	19.638	1	50599			21008	4810	14482	14515	24196	24196					-0.01367084753189829
GQPPAQTGV	9	Unmodified	_GQPPAQTGV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.7222900390625	2	427.721967	853.429381	-0.80643	-0.00034493	1.1266	0.00048186	0.32015	0.00013693	427.72228479834513	32.858	1.9881	32.858	32.262	34.25	0					131	52	3	0	0	0	0.016758	2	2318	2318;2337		153.04	68.12	1	1798700			21009	587	14483	14516	24197;24198	24197					-0.0031964768775196717
GQPPAQTGV	9	Unmodified	_GQPPAQTGV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.72222900390625	2	427.721967	853.429381	-0.62228	-0.00026616	0.91754	0.00039245	0.29526	0.00012629	427.7221946033302	32.754	2.0247	32.761	32.099	34.124	0.0066261					136	53	4	0	0	0	0.086035	1	2296	2296		115.49	49.065	1	1805200			21010	587	14483	14516	24199	24199					-0.0031964768775196717
GQPQQLLQV	9	Unmodified	_GQPQQLLQV_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;ENST00000534518.1_1_11:77024925-77025045:+|nuORF	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.78497314453125	2	505.785099	1009.55564	1.1211	0.00056703	2.4448	0.0012366	3.5659	0.0018036	505.7844073130423	63.781	0.90161	63.781	63.41	64.311	0					54	24	5	0	0	0	0.047345	2	7478	7466;7478		129.68	28.375	1	3843500			21011	8406	14484	14517	24200;24201	24201					0.05124858817521272
GQPQQLLQV	9	Unmodified	_GQPQQLLQV_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;ENST00000534518.1_1_11:77024925-77025045:+|nuORF	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.7847595214844	2	505.785099	1009.55564	-0.030706	-1.5531E-05	-0.069291	-3.5046E-05	-0.099997	-5.0577E-05	505.7848783010706	63.972	1.0943	63.721	63.372	64.466	-0.25141					64	29	4	0	0	0	0.11092	2	7467	7467;7478		108.09	39.603	1	3806800			21012	8406	14484	14517	24202;24203	24202					0.05124858817521272
GQPQQLLQV	9	Unmodified	_GQPQQLLQV_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;ENST00000534518.1_1_11:77024925-77025045:+|nuORF	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7851257324219	2	505.785099	1009.55564	1.7211	0.00087052	-1.7029	-0.00086129	0.018255	9.2331E-06	505.784001120821	63.721	1.046	63.775	63.373	64.419	0.054104					55	28	3	0	0	0	0.12602	2	7406	7393;7406		104.75	25.296	1	3740000			21013	8406	14484	14517	24204;24205	24205					0.05124858817521272
GQPQQNLYHPG	11	Unmodified	_GQPQQNLYHPG_					0	0	0		ENST00000563314.5_1_16:28846803-28847583:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.Q1002Kfs*50|1|0.09|ENSG00000168488|chr16:28836029-28836029|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	ENST00000563314.5_1_16:28846803-28847583:+|nuORF	ENST00000563314.5_1_16:28846803-28847583:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.89544677734375	3	413.535271	1237.58398	-0.57221	-0.00023663	3.7453	0.0015488	3.1731	0.0013122	413.5369195956607	27.542	0.89222	27.623	27.1	27.993	0.081293					44	23	3	0	0	0	0.024736	1	1394	1394		25.126	0	1	103260			21014	166	14485	14518	24206	24206					-0.02530443273212768
GQPRAPRSPVL	11	Unmodified	_GQPRAPRSPVL_					0	0	0			REV__ENST00000268097.9_1_15:72668459-72668681:-|nuORF	REV__ENST00000268097.9_1_15:72668459-72668681:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3441162109375	2	589.343646	1176.67274	-1.3212	-0.00077864	0.069689	4.1071E-05	-1.2515	-0.00073757	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0429	1	11057	11057		27.047	0.3544	1	5175100	+		21015	29777	14486	14519	24207	24207					0.09147016757128767
GQPSWPVE	8	Unmodified	_GQPSWPVE_					0	0	0			REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.2616882324219	2	450.216517	898.418482	-0.043717	-1.9682E-05	0.69813	0.00031431	0.65442	0.00029463	450.2167386806047	41.738	0.70562	41.606	41.215	41.921	-0.13219					33	19	2	0	0	0	0.027866	1	3699	3699		30.504	3.7075	1	124170	+		21016	36826	14487	14520	24208	24208					-0.034790500620488274
GQPSWPVE	8	Unmodified	_GQPSWPVE_					0	0	0			REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.216517	898.418482	0.42691	0.0001922	0.13187	5.9372E-05	0.55878	0.00025157	450.2165295663736	41.633	0.696	41.633	41.258	41.954	0	-0.048002	-0.00033904	NaN	23.042	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151770	+		21017	36826	14487	14520							-0.034790500620488274
GQPTLKRGG	9	Unmodified	_GQPTLKRGG_					0	0	0			REV__ENSG00000105372|ENST00000598742|RPS19	REV__ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2644348144531	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	0.96906	1	9715	9715		26.693	0	1	3503800	+		21018	21518	14488	14521	24209	24209					0.05435722848869773
GQPTRLPSV	9	Unmodified	_GQPTRLPSV_					0	0	0		nc|ENSG00000178217|Q5SQS7-3|SH2D4B;nc|ENSG00000178217|Q5SQS7-2|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7744140625	2	477.771991	953.529429	-0.25372	-0.00012122	4.4477	0.002125	4.194	0.0020038	477.77402803298537	69.208	1.0896	69.223	68.865	69.955	0.015129					60	27	4	0	0	0	0.19099	1	8249	8249		90.37	5.4543	1	7029200			21019	18549	14489	14522	24210	24210					0.0508058964603606
GQPVSPFPKR	10	Unmodified	_GQPVSPFPKR_					0	0	0		ENST00000449606.5_1_16:23534653-23534791:-|nuORF	ENST00000449606.5_1_16:23534653-23534791:-|nuORF	ENST00000449606.5_1_16:23534653-23534791:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3173828125	2	556.81419	1111.61383	-0.18519	-0.00010312	0.77205	0.00042989	0.58686	0.00032677	557.3167727157486	21.499	1.1117	21.57	21.106	22.218	0.071487					71	22	5	0	0	0	1.0122	1	636	636		44.377	0.26039	1	552860			21020	14502	14490	14523	24211	24211					0.062485404627977914
GQQDIFVCV	9	Unmodified	_GQQDIFVCV_					0	0	0		ENST00000439248.5_1_22:43460315-43464517:-|nuORF	ENST00000439248.5_1_22:43460315-43464517:-|nuORF	ENST00000439248.5_1_22:43460315-43464517:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7762451171875	2	504.744585	1007.47462	-0.27702	-0.00013983	-1.1283	-0.0005695	-1.4053	-0.00070933	504.74390127754106	73.851	0.16188	73.586	73.445	73.607	-0.26479					6	3	2	0	0	0	0.024457	1	8684	8684		45.952	16.11	1	92734			21021	14330	14491	14524	24212	24212					-0.028821652168971923
GQQDIFVCV	9	Unmodified	_GQQDIFVCV_					0	0	0		ENST00000439248.5_1_22:43460315-43464517:-|nuORF	ENST00000439248.5_1_22:43460315-43464517:-|nuORF	ENST00000439248.5_1_22:43460315-43464517:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.744585	1007.47462	-0.30126	-0.00015206	-3.2278	-0.0016292	-3.529	-0.0017813	504.7427546461193	73.583	0.31347	73.593	73.327	73.64	0.0096512	0.033874	-0.0011512	NaN	60.972	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355750			21022	14330	14491	14524							-0.028821652168971923
GQQESVRIP	9	Unmodified	_GQQESVRIP_					0	0	0		ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.27215576171875	2	507.272355	1012.53016	-0.70333	-0.00035678	0.24154	0.00012253	-0.46179	-0.00023425	507.2724426666319	24.451	0.96857	24.451	24.166	25.135	0					53	21	4	0	0	0	0.14024	1	1057	1057		101.6	0	1	2079400			21023	16287	14492	14525	24213	24213					0.024393842950985345
GQQESVRIP	9	Unmodified	_GQQESVRIP_					0	0	0		ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2719421386719	2	507.272355	1012.53016	-1.2409	-0.0006295	0.84175	0.000427	-0.39919	-0.0002025	507.27272298393655	24.467	1.3252	24.42	24.177	25.502	-0.047148					61	30	4	0	0	0	0.1158	1	1047	1047		107.01	16.231	1	1905700			21024	16287	14492	14525	24214	24214					0.024393842950985345
GQQESVRIP	9	Unmodified	_GQQESVRIP_					0	0	0		ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	ENST00000532312.2_1_11:118995018-118995186:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.27197265625	2	507.272355	1012.53016	0.185	9.3848E-05	-0.62527	-0.00031718	-0.44027	-0.00022334	507.27196057928336	24.309	0.86644	24.387	24.093	24.959	0.078344					51	18	5	0	0	0	0.22902	3	1001	992;1001;1014		85.161	9.1707	1	1924000			21025	16287	14492	14525	24215;24216;24217	24216					0.024393842950985345
GQQFAVKI	8	Unmodified	_GQQFAVKI_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000477823.1_1_X:41646429-41782226:-|nuORF;ENST00000468986.6_1_X:41602925-41782241:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	445.758544921875	2	445.758352	889.502152	-0.95144	-0.00042411	1.0161	0.00045293	0.064638	2.8813E-05	445.7586398197009	51.445	0.99664	51.532	51.039	52.035	0.087009					77	27	4	0	0	0	0.59392	1	5395	5395		76.847	2.5916	1	3886800			21026	5926	14493	14526	24218	24218					0.052981061056470935
GQQIPSANI	9	Unmodified	_GQQIPSANI_					0	0	0			REV__nc|ENSG00000148516|P37275-4|ZEB1	REV__nc|ENSG00000148516|P37275-4|ZEB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2506408691406	2	464.248349	926.482145	-0.57574	-0.00026729	4.2785	0.0019863	3.7028	0.001719	464.2503925053204	47.929	1.9482	47.929	47.56	49.508	0					193	56	6	0	0	0	0.31037	1	4931	4931		74.255	5.4682	1	137570000	+		21027	36771	14494	14527	24219	24219					0.01596310375032317
GQQKLYQV	8	Unmodified	_GQQKLYQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2646484375	2	482.266542	962.51853	-0.81455	-0.00039283	-4.392	-0.0021181	-5.2066	-0.002511	482.2643742359633	37.788	1.9701	37.788	36.229	38.199	0					105	54	2	0	0	0	0.26064	4	3113	3086;3096;3113;3126		128.86	46.621	1	22181000			21028	3151	14495	14528	24220;24221;24222;24223	24222					0.03577187271753246
GQQKLYQV	8	Unmodified	_GQQKLYQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2646789550781	2	482.266542	962.51853	-0.86251	-0.00041596	-4.398	-0.002121	-5.2605	-0.002537	482.2643150122896	37.68	4.4195	37.598	36.168	40.588	-0.082512					176	121	2	0	0	0	0.24207	4	3059	3059;3068;3079;3091		133.47	42.692	1	19692000			21029	3151	14495	14528	24224;24225;24226;24227	24224					0.03577187271753246
GQQKLYQV	8	Unmodified	_GQQKLYQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2646179199219	2	482.266542	962.51853	-1.0472	-0.00050502	-4.2542	-0.0020516	-5.3013	-0.0025567	482.26432791382655	37.815	3.7566	37.847	36.16	39.917	0.032269					243	103	5	0	0	0	0.1848	4	3053	3035;3053;3065;3076		143.02	52.243	1	17282000			21030	3151	14495	14528	24228;24229;24230;24231	24229					0.03577187271753246
GQQPGSMVAL	10	Unmodified	_GQQPGSMVAL_					0	0	0		ENST00000330333.10_1_21:42647577-42647706:+|nuORF	ENST00000330333.10_1_21:42647577-42647706:+|nuORF	ENST00000330333.10_1_21:42647577-42647706:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.76617431640625	2	494.250034	986.485516	0.49281	0.00024357	-3.8247	-0.0018904	-3.3319	-0.0016468	494.24806414182603	41.816	0.99075	41.816	41.579	42.569	0					71	28	4	0	0	0	0.03519	1	3844	3844		40.778	16.575	1	709910			21031	12329	14496	14529	24232	24232					-0.008267628425983276
GQQTGLPSLL	10	Unmodified	_GQQTGLPSLL_					0	0	0			REV__ENST00000006251.11_2_22:45073077-45098376:+|nuORF	REV__ENST00000006251.11_2_22:45073077-45098376:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2807922363281	2	507.284931	1012.55531	-0.074823	-3.7956E-05	-0.80323	-0.00040747	-0.87806	-0.00044542	507.28451644448074	104.9	0.57935	104.9	104.51	105.09	0.00096893					31	18	2	0	0	0	1.0816	1	13440	13440		35.152	2.3396	1	213670	+		21032	29258	14497	14530	24233	24233					0.04953439097675982
GQRAHPSNI	9	Unmodified	_GQRAHPSNI_					0	0	0		ENSG00000110900|ENST00000546076|TSPAN11	ENSG00000110900|ENST00000546076|TSPAN11	ENSG00000110900|ENST00000546076|TSPAN11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2646789550781	2	490.25704	978.499526	0.30171	0.00014791	1.7148	0.0008407	2.0165	0.00098862	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	0.89441	1	13584	13584		32.812	2.3088	1	6618800			21033	3073	14498	14531	24234	24234					0.009416507007017572
GQRHWQWVDQT	11	Unmodified	_GQRHWQWVDQT_					0	0	0		nc|ENSG00000111729|Q9UMR7-4|CLEC4A;nc|ENSG00000111729|Q9UMR7-3|CLEC4A;nc|ENSG00000111729|Q9UMR7-2|CLEC4A;ENSG00000111729|ENST00000229332|CLEC4A	nc|ENSG00000111729|Q9UMR7-4|CLEC4A	nc|ENSG00000111729|Q9UMR7-4|CLEC4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2528381347656	3	480.897092	1439.66945	-0.85358	-0.00041049	-3.4325	-0.0016507	-4.2861	-0.0020612	480.8958676013638	35.228	0.68097	35.207	34.828	35.509	-0.021763					26	17	2	0	0	0	0.024805	1	2713	2713		14.779	0	1	123340			21034	3144	14499	14532	24235	24235					-0.03280278087549959
GQRLGAQWAF	10	Unmodified	_GQRLGAQWAF_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.2922973632812	2	567.296165	1132.57778	-1.1531	-0.00065413	-2.6157	-0.0014839	-3.7687	-0.002138	567.294589795973	20.154	0.72867	20.154	19.88	20.609	0					39	14	5	0	0	0	0.941	1	505	505		51.335	3.4199	1	330520	+		21035	21562	14500	14533	24236	24236					0.016790832859214788
GQRQPVVT	8	Unmodified	_GQRQPVVT_					0	0	0		ENST00000416281.6_1_11:67048455-67049666:+|nuORF	ENST00000416281.6_1_11:67048455-67049666:+|nuORF	ENST00000416281.6_1_11:67048455-67049666:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.26654052734375	2	442.751059	883.487565	-0.28013	-0.00012403	1.4452	0.00063988	1.1651	0.00051586	442.7510800296606	26.057	0.83432	26.034	25.777	26.611	-0.023087					33	19	4	0	0	0	0.027866	1	1342	1342		30.504	0	1	171260			21036	13896	14501	14534	24237	24237					0.0411603395750717
GQRRVPVA	8	Unmodified	_GQRRVPVA_					0	0	0			REV__ENST00000462073.5_1_22:30695433-30695490:-|nuORF	REV__ENST00000462073.5_1_22:30695433-30695490:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7682800292969	2	441.767043	881.519533	0.61928	0.00027358	1.3998	0.00061839	2.0191	0.00089196	441.767731371388	103.03	1.3899	102.86	102.5	103.89	-0.17034					84	33	5	0	0	0	1.0572	1	12814	12814		28.254	1.4582	1	21018000	+		21037	32892	14502	14535	24238	24238					0.07403446431317207
GQRYKSTIDA	10	Unmodified	_GQRYKSTIDA_					0	0	0			REV__ENSG00000172262|ENST00000682664|ZNF131	REV__ENSG00000172262|ENST00000682664|ZNF131	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2500610351562	2	569.796195	1137.57784	0.65846	0.00037519	0.53023	0.00030212	1.1887	0.00067731	569.7963702416381	59.733	0.61374	59.557	59.199	59.813	-0.1761					20	15	2	0	0	0	0.03519	1	6619	6619		51.193	19.663	1	97038	+		21038	26653	14503	14536	24239	24239					0.01455038495282679
GQSAIKHNV	9	Unmodified	_GQSAIKHNV_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2618103027344	2	477.261791	952.509028	0.4035	0.00019257	1.459	0.00069632	1.8625	0.0008889	477.2614566947629	20.041	0.91192	20.041	19.556	20.468	0					44	18	4	0	0	0	0.77768	1	500	500		40.778	3.6191	1	336720			21039	5465	14504	14537	24240	24240					0.030874189862174717
GQSAIKHNV	9	Unmodified	_GQSAIKHNV_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.2618408203125	2	477.261791	952.509028	-0.027677	-1.3209E-05	0.40093	0.00019135	0.37325	0.00017814	477.2616480304614	20.344	0.77712	20.239	19.884	20.661	-0.10477					26	15	3	0	0	0	0.39228	2	509	509;519		66.429	23.955	1	369760			21040	5465	14504	14537	24241;24242	24241					0.030874189862174717
GQSALPQRL	9	Unmodified	_GQSALPQRL_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.277099609375	2	485.277441	968.540328	-0.25816	-0.00012528	1.155	0.00056051	0.89688	0.00043523	485.27806985038546	42.241	0.99791	42.109	41.641	42.638	-0.13219					50	28	2	0	0	0	0.1158	1	3857	3857		107.01	16.231	1	4739800			21041	9236	14505	14538	24243	24243					0.054799920203208785
GQSALPQRL	9	Unmodified	_GQSALPQRL_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2773132324219	2	485.277441	968.540328	-0.47462	-0.00023032	1.4255	0.00069178	0.95092	0.00046146	485.2782010337812	42.178	0.96988	42.204	41.821	42.79	0.026012					44	27	2	0	0	0	0.14024	1	3806	3806		101.6	10.824	1	4905500			21042	9236	14505	14538	24244	24244					0.054799920203208785
GQSAVASNI	9	Unmodified	_GQSAVASNI_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.7195129394531	2	423.719424	845.424296	-0.021793	-9.234E-06	0.64161	0.00027186	0.61981	0.00026263	423.7195852058945	39.836	0.71833	39.836	39.562	40.281	0					49	19	4	0	0	0	0.20652	1	3464	3464		88.177	11.33	1	2936800			21043	3047	14506	14539	24245	24245					-0.004599515503969087
GQSELTLLL	9	Unmodified	_GQSELTLLL_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.28179931640625	2	487.281857	972.549162	0.63246	0.00030819	0.19814	9.6551E-05	0.8306	0.00040474	487.28147793454923	85.97	2.1602	85.97	85.331	87.491	0					111	50	4	0	0	0	0.013094	4	10804	10779;10791;10804;10816		171.38	54.481	1	3388800			21044	1724	14507	14540	24246;24247;24248;24249	24248					0.06178920866148019
GQSELTLLL	9	Unmodified	_GQSELTLLL_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2818298339844	2	487.281857	972.549162	-0.1982	-9.6577E-05	1.2802	0.00062384	1.082	0.00052726	487.2818680018508	85.993	1.1479	85.948	85.535	86.683	-0.045105					72	26	5	0	0	0	0.013094	4	10769	10747;10758;10769;10781		171.38	50.764	1	3382400			21045	1724	14507	14540	24250;24251;24252;24253	24252					0.06178920866148019
GQSELTLLL	9	Unmodified	_GQSELTLLL_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2815856933594	2	487.281857	972.549162	-1.2482	-0.00060825	1.4062	0.00068524	0.15799	7.6986E-05	487.282407980727	85.917	1.9433	85.941	85.492	87.436	0.023666					113	45	3	0	0	0	0.015841	5	10720	10698;10709;10720;10733;10747		205.58	73.638	1	5878600			21046	1724	14507	14540	24254;24255;24256;24257;24258	24256					0.06178920866148019
GQSGGCGEI	9	Unmodified	_GQSGGCGEI_					0	0	0			REV__ENST00000592940.2_1_19:1105716-1106094:+|nuORF	REV__ENST00000592940.2_1_19:1105716-1106094:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.16986083984375	2	404.16871	806.322867	-0.13149	-5.3143E-05	2.4383	0.00098548	2.3068	0.00093233	404.17013294418155	75.927	1.58	75.751	75.312	76.892	-0.17548					95	38	5	0	0	0	0.96322	1	9002	9002		27.882	1.0861	1	5581700	+		21047	35756	14508	14541	24259	24259					-0.08804146244597177
GQSHVQAAK	9	Unmodified	_GQSHVQAAK_					0	0	0			REV__ENST00000368007.8_1_1:161088121-161088289:+|nuORF	REV__ENST00000368007.8_1_1:161088121-161088289:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	2	463.246141	924.477728	0.5182	0.00024005	-0.62227	-0.00028826	-0.10407	-4.8209E-05	463.24578075621895	41.96	0.55179	41.986	41.601	42.152	0.026012					20	15	2	0	0	0	0.024319	1	3727	3727		47.657	0	1	151180	+		21048	31040	14509	14542	24260	24260					0.012468459521301156
GQSIHQVTV	9	Unmodified	_GQSIHQVTV_					0	0	0		ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7616882324219	2	484.761623	967.508694	1.2183	0.00059061	-1.045	-0.00050658	0.17334	8.4031E-05	484.76105958348836	37.141	0.78622	37.141	36.846	37.632	0					58	20	4	0	0	0	0.12914	1	3007	3007		104.06	19.141	1	2989100			21049	3412	14510	14543	24261	24261					0.02363999266378869
GQSIHQVTV	9	Unmodified	_GQSIHQVTV_					0	0	0		ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.76190185546875	2	484.761623	967.508694	0.15376	7.4539E-05	0.084896	4.1154E-05	0.23866	0.00011569	484.7615997748218	37.024	0.82365	36.96	36.628	37.452	-0.063389					60	21	4	0	0	0	0.10464	2	2974	2963;2974		109.48	24.563	1	3087600			21050	3412	14510	14543	24262;24263	24263					0.02363999266378869
GQSIHQVTV	9	Unmodified	_GQSIHQVTV_					0	0	0		ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7615661621094	2	484.761623	967.508694	-0.4238	-0.00020544	0.5266	0.00025527	0.1028	4.9834E-05	484.76179218190157	37.098	1.0576	37.13	36.797	37.854	0.032269					63	27	4	0	0	0	0.086035	2	2948	2948;2960		115.49	19.304	1	2707700			21051	3412	14510	14543	24264;24265	24264					0.02363999266378869
GQSIHQVTV	9	Unmodified	_GQSIHQVTV_					0	0	0		ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.761623	967.508694	0.1489	7.2181E-05	-5.1907	-0.0025163	-5.0418	-0.0024441	484.7585308796544	37.442	0.19788	37.249	37.152	37.35	-0.193	0.12891	-0.0048182	NaN	115.49	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40827			21052	3412	14510	14543							0.02363999266378869
GQSIVEKDL	9	Unmodified	_GQSIVEKDL_					0	0	0			REV__ENSG00000186714|ENST00000335185|CCDC73	REV__ENSG00000186714|ENST00000335185|CCDC73	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.76873779296875	2	494.769114	987.523675	0.027394	1.3553E-05	0.78524	0.00038851	0.81263	0.00040207	494.7694112820002	47.535	0.70347	47.348	47.084	47.787	-0.18684					32	18	2	0	0	0	0.5973	1	4645	4645		52.937	5.0211	1	2747500	+		21053	27879	14511	14544	24266	24266					0.029414463436978622
GQSKGFAFI	9	Unmodified	_GQSKGFAFI_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.756103515625	2	477.75581	953.497067	-0.19409	-9.2726E-05	0.61543	0.00029403	0.42135	0.0002013	477.75590396823407	58.465	0.61869	58.278	57.993	58.611	-0.18705					40	16	3	0	0	0	0.2508	1	6608	6608		82.241	18.934	1	2088700			21054	4463	14512	14545	24267	24267					0.01845802243030903
GQSKGFAFI	9	Unmodified	_GQSKGFAFI_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.75581	953.497067	1.0032	0.00047928	-0.71276	-0.00034053	0.29042	0.00013875	477.7552328560117	58.297	0.80544	58.297	57.982	58.787	0	0.047823	-0.00082248	NaN	82.241	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2001900			21055	4463	14512	14545							0.01845802243030903
GQSKGFAFI	9	Unmodified	_GQSKGFAFI_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	477.75581	953.497067	-0.058743	-2.8065E-05	0.97499	0.00046581	0.91625	0.00043774	477.7558792993769	58.081	0.83762	58.172	57.908	58.745	0.091217	-0.076771	0.00079019	NaN	82.241	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2275600			21056	4463	14512	14545							0.01845802243030903
GQSKGFALV	9	Unmodified	_GQSKGFALV_					0	0	0		ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.7556457519531	2	453.75581	905.497067	-0.086041	-3.9042E-05	0.12224	5.5469E-05	0.036203	1.6427E-05	453.75575931050463	48.521	0.8634	48.521	48.209	49.072	0					81	24	4	0	0	0	0.10174	3	4952	4940;4952;4966		110.12	36.145	1	5299300			21057	3125	14513	14546	24268;24269;24270	24269					0.040538022430382625
GQSKGFALV	9	Unmodified	_GQSKGFALV_					0	0	0		ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	453.7559814453125	2	453.75581	905.497067	-0.28262	-0.00012824	0.35744	0.00016219	0.07482	3.395E-05	453.75585669255776	48.639	1.3672	48.486	48.227	49.594	-0.15277					84	37	4	0	0	0	0.03849	4	4942	4942;4952;4965;4978		134.81	40.804	1	5109600			21058	3125	14513	14546	24271;24272;24273;24274	24271					0.040538022430382625
GQSKGFALV	9	Unmodified	_GQSKGFALV_					0	0	0		ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.7556457519531	2	453.75581	905.497067	-0.098929	-4.489E-05	-0.017312	-7.8554E-06	-0.11624	-5.2745E-05	453.7556963041193	48.373	0.93531	48.439	48.117	49.052	0.066795					74	25	4	0	0	0	0.067814	4	4855	4855;4866;4879;4892		122.18	33.533	1	5217500			21059	3125	14513	14546	24275;24276;24277;24278	24275					0.040538022430382625
GQSKVFFRA	9	Unmodified	_GQSKVFFRA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.287353515625	2	520.287808	1038.56106	-1.4612	-0.00076024	0.99483	0.0005176	-0.46636	-0.00024264	520.288296326704	36.066	0.61113	36.066	35.687	36.298	0					54	16	4	0	0	0	0.021872	4	2833	2811;2822;2833;2847		148.04	74.068	1	6529600			21060	2185	14514	14547	24279;24280;24281;24282	24281					0.043325824000021385
GQSKVFFRA	9	Unmodified	_GQSKVFFRA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2882080078125	2	520.287808	1038.56106	-1.2705	-0.00066105	0.71766	0.00037339	-0.55288	-0.00028766	520.2881652918203	35.901	0.60767	35.859	35.528	36.136	-0.042454					52	16	4	0	0	0	0.067814	4	2777	2777;2789;2799;2813		122.18	58.87	1	6554000			21061	2185	14514	14547	24283;24284;24285;24286	24283					0.043325824000021385
GQSKVFFRA	9	Unmodified	_GQSKVFFRA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2888793945312	2	520.287808	1038.56106	-0.73793	-0.00038393	0.40105	0.00020866	-0.33688	-0.00017527	520.2879100517627	35.976	0.68584	36.014	35.652	36.338	0.038071					72	18	5	0	0	0	0.067814	4	2743	2743;2755;2767;2779		122.18	55.344	1	5602600			21062	2185	14514	14547	24287;24288;24289;24290	24287					0.043325824000021385
GQSLPSIAAIL	11	Unmodified	_GQSLPSIAAIL_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1;ENST00000529244.1_1_11:65786354-65788652:-|nuORF	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7566528320312	2	535.316232	1068.61791	-0.70188	-0.00037573	0.70193	0.00037575	4.8011E-05	2.5701E-08	535.3165081493556	76.019	1.2491	75.746	75.384	76.634	-0.27266					55	30	3	0	0	0	0.02479	1	9088	9088		61.691	13.776	1	1002000			21063	8547	14515	14548	24291	24291					0.08634585165850694
GQTFPNADI	9	Unmodified	_GQTFPNADI_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.77923583984375	2	481.732532	961.45051	-0.11685	-5.6292E-05	0.63526	0.00030602	0.5184	0.00024973	481.7326167872753	61.023	1.5318	60.81	60.531	62.062	-0.21339					49	40	2	0	0	0	0.02435	1	6982	6982		42.396	10.441	1	85935		+	21064	544	14516	14549	24292	24292					-0.0317568237891237
GQTGVIRSV	9	Unmodified	_GQTGVIRSV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.76409912109375	2	458.764166	915.513779	-0.74327	-0.00034099	0.51373	0.00023568	-0.22954	-0.00010531	458.76434841717463	36.146	0.9563	36.146	35.849	36.805	0					73	26	7	0	0	0	0.034407	4	2849	2829;2837;2849;2861		138.06	58.611	1	20455000			21065	9842	14517	14550	24293;24294;24295;24296	24295					0.052643031289903774
GQTGVIRSV	9	Unmodified	_GQTGVIRSV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7640686035156	2	458.764166	915.513779	-1.0018	-0.00045959	0.76632	0.00035156	-0.23548	-0.00010803	458.7644727899414	35.991	0.96109	35.948	35.688	36.649	-0.042454					55	26	3	0	0	0	0.034407	4	2804	2793;2804;2816;2828		138.06	55.757	1	18738000			21066	9842	14517	14550	24297;24298;24299;24300	24298					0.052643031289903774
GQTGVIRSV	9	Unmodified	_GQTGVIRSV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.76416015625	2	458.764166	915.513779	-0.11567	-5.3065E-05	-0.10041	-4.6064E-05	-0.21608	-9.9129E-05	458.7640975711888	36.079	0.98597	36.117	35.776	36.762	0.038044					75	27	5	0	0	0	0.01896	5	2788	2756;2764;2776;2788;2803		150.36	59.585	1	16130000			21067	9842	14517	14550	24301;24302;24303;24304;24305	24304					0.052643031289903774
GQTITISRV	9	Unmodified	_GQTITISRV_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;FMR1-FIP1L1|3|fusion;FMR1-FIP1L1|1|fusion;FMR1-FIP1L1|2|fusion	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7845764160156	2	487.785099	973.555644	-1.2722	-0.00062058	0.87119	0.00042496	-0.40105	-0.00019563	487.7853904743598	44.522	0.73591	44.377	44.099	44.834	-0.14471					65	21	4	0	0	0	0.12933	2	4245	4245;4258		104.01	21.773	1	5680700			21068	5796	14518	14551	24306;24307	24306					0.06780858817523949
GQTITISRV	9	Unmodified	_GQTITISRV_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;FMR1-FIP1L1|3|fusion;FMR1-FIP1L1|1|fusion;FMR1-FIP1L1|2|fusion	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.784912109375	2	487.785099	973.555644	-0.70023	-0.00034156	0.49424	0.00024108	-0.206	-0.00010048	487.78523316064485	44.421	0.819	44.458	44.176	44.995	0.0369					62	23	4	0	0	0	0.31105	2	4166	4166;4176		74.165	12.058	1	5845700			21069	5796	14518	14551	24308;24309	24308					0.06780858817523949
GQTITISRV	9	Unmodified	_GQTITISRV_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;FMR1-FIP1L1|3|fusion;FMR1-FIP1L1|1|fusion;FMR1-FIP1L1|2|fusion	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.785099	973.555644	-1.0144	-0.00049479	0.55034	0.00026845	-0.46403	-0.00022635	487.78524984840465	44.375	0.707	44.375	44.12	44.827	0	-0.028171	-9.4326E-05	NaN	104.01	60	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6183200			21070	5796	14518	14551							0.06780858817523949
GQTITQPGK	9	Unmodified	_GQTITQPGK_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000483338.1_1_X:107826116-107869594:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7840270996094	2	465.256174	928.497795	0.55456	0.00025801	-0.90691	-0.00042195	-0.35235	-0.00016393	465.25562508751955	46.183	0.65378	46.234	46.031	46.685	0.051395					27	18	2	0	0	0	0.024466	1	4548	4548		24.519	0	1	388340			21071	9694	14519	14552	24310	24310					0.03068596892092046
GQTITQPGK	9	Unmodified	_GQTITQPGK_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000483338.1_1_X:107826116-107869594:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.256174	928.497795	-1.0039	-0.00046709	0.62668	0.00029157	-0.37726	-0.00017552	465.2563545265775	46.317	0.49173	46.165	45.92	46.411	-0.15156	-0.062514	0.00045549	NaN	18.262	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378860			21072	9694	14519	14552							0.03068596892092046
GQTITQPGK	9	Unmodified	_GQTITQPGK_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000483338.1_1_X:107826116-107869594:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.256174	928.497795	-0.73789	-0.00034331	6.9875	0.003251	6.2496	0.0029077	465.2588670939272	46.46	0.50559	46.258	45.967	46.472	-0.20226	0.030103	0.0063743	NaN	18.262	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194770			21073	9694	14519	14552							0.03068596892092046
GQTKDVLVI	9	Unmodified	_GQTKDVLVI_					0	0	0		SMARCAD1|p.E971D|1|0.13|ENSG00000163104|chr4:94284963-94284963|A/T|missense_variant	SMARCAD1|p.E971D|1|0.13|ENSG00000163104|chr4:94284963-94284963|A/T|missense_variant	SMARCAD1|p.E971D|1|0.13|ENSG00000163104|chr4:94284963-94284963|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.79010009765625	2	486.78985	971.565146	-0.084576	-4.1171E-05	-0.36461	-0.00017749	-0.44919	-0.00021866	486.7896047044664	51.855	0.92472	51.855	51.466	52.391	0					71	25	5	0	0	0	0.40693	1	5528	5528		65.465	5.3471	1	4112200			21074	37904	14520	14553	24311	24311					0.07822627103041668
GQTKEVLVI	9	Unmodified	_GQTKEVLVI_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.79754638671875	2	493.797675	985.580796	0.50681	0.00025026	-1.3474	-0.00066534	-0.84058	-0.00041507	493.79700361881004	51.161	0.75517	51.161	50.845	51.6	0					71	20	5	0	0	0	0.025498	2	5413	5401;5413		145.16	38.74	1	16397000			21075	7035	14521	14554	24312;24313	24313					0.08742913620085346
GQTKEVLVI	9	Unmodified	_GQTKEVLVI_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.797607421875	2	493.797675	985.580796	-0.43011	-0.00021239	-0.55641	-0.00027476	-0.98652	-0.00048714	493.7973939581735	51.311	0.81356	51.162	50.826	51.64	-0.14916					75	22	5	0	0	0	0.041068	2	5407	5407;5419		132.76	33.383	1	15754000			21076	7035	14521	14554	24314;24315	24314					0.08742913620085346
GQTKEVLVI	9	Unmodified	_GQTKEVLVI_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7978515625	2	493.797675	985.580796	-0.96026	-0.00047417	0.015629	7.7175E-06	-0.94463	-0.00046645	493.79766170345863	51.079	0.85957	51.166	50.785	51.644	0.087006					82	23	5	0	0	0	0.053401	3	5320	5309;5320;5332		127.46	33.455	1	14376000			21077	7035	14521	14554	24316;24317;24318	24317					0.08742913620085346
GQTKSKSKLV	10	Unmodified	_GQTKSKSKLV_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3271484375	2	538.327131	1074.63971	-0.12202	-6.5684E-05	-0.17383	-9.3578E-05	-0.29585	-0.00015926	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	1.0344	1	12710	12710		41.427	8.6142	1	22543000	+		21078	20075	14522	14555	24319	24319					0.10537389914406958
GQTLDARTVM	10	Unmodified	_GQTLDARTVM_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.2796020507812	2	546.279323	1090.54409	-1.1738	-0.00064123	2.6749	0.0014612	1.5011	0.00082002	546.2809200576392	29.247	0.29761	29.25	29.129	29.427	0.0031376					9	7	2	0	0	0	0.03519	1	1748	1748		47.657	5.2612	1	48644			21079	10159	14523	14556	24320	24320					0.002442937318846816
GQTQEHAL	8	Unmodified	_GQTQEHAL_					0	0	0		ENST00000451469.1_1_3:39400337-39400661:+|nuORF	ENST00000451469.1_1_3:39400337-39400661:+|nuORF	ENST00000451469.1_1_3:39400337-39400661:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.7745056152344	2	442.217049	882.419545	-0.29312	-0.00012962	-0.69109	-0.00030561	-0.98421	-0.00043523	442.21711329610457	22.263	0.94215	22.263	21.723	22.665	0					38	19	3	0	0	0	0.027866	1	698	698		19.36	0	1	98393			21080	14522	14524	14557	24321	24321					-0.026368356931357084
GQTRVRGGG	9	Unmodified	_GQTRVRGGG_					0	0	0		ENST00000597275.5_1_X:48911115-48911331:+|nuORF	ENST00000597275.5_1_X:48911115-48911331:+|nuORF	ENST00000597275.5_1_X:48911115-48911331:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.24554443359375	2	444.243932	886.473312	0.28074	0.00012471	3.3127	0.0014716	3.5934	0.0015963	444.24547325776797	102.85	1.105	102.85	102.55	103.65	-0.0046082					64	26	5	0	0	0	0.53979	1	13122	13122		56.721	3.3696	1	8156500			21081	17445	14525	14558	24322	24322					0.02553381529253329
GQTSVIEQI	9	Unmodified	_GQTSVIEQI_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.76123046875	2	487.761289	973.508025	1.0772	0.00052542	-1.2774	-0.00062307	-0.20021	-9.7656E-05	487.7606279336297	59.499	0.97821	59.299	58.923	59.901	-0.20016					65	26	3	0	0	0	0.042502	1	6746	6746		131.62	1.9336	1	7366000			21082	1601	14526	14559	24323	24323					0.02021159826665553
GQTTLFIQDTK	11	Unmodified	_GQTTLFIQDTK_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.9034118652344	3	417.890832	1250.65067	-0.081136	-3.3906E-05	1.3012	0.00054377	1.2201	0.00050986	417.8915633499981	32.171	0.42542	32.013	31.819	32.245	-0.15772					13	9	2	0	0	0	0.024755	1	2159	2159		22.781	0	1	172990	+		21083	22497	14527	14560	24324	24324					0.03536747498014847
GQTTVQVRV	9	Unmodified	_GQTTVQVRV_					0	0	0		ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2830505371094	2	494.282723	986.550893	0.54239	0.00026809	-0.9751	-0.00048197	-0.43271	-0.00021388	494.2821522066644	39.812	0.6772	39.812	39.459	40.137	0					42	18	3	0	0	0	0.03666	2	3455	3455;3467		136.27	67.481	1	2046800			21084	8655	14528	14561	24325;24326	24325					0.057079746747604077
GQTTVQVRV	9	Unmodified	_GQTTVQVRV_					0	0	0		ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.28265380859375	2	494.282723	986.550893	-0.86401	-0.00042707	0.45767	0.00022622	-0.40634	-0.00020085	494.2828405611683	39.921	0.66263	39.809	39.432	40.095	-0.11222					44	17	3	0	0	0	0.062622	1	3461	3461		124.08	39.165	1	1737000			21085	8655	14528	14561	24327	24327					0.057079746747604077
GQTTVQVRV	9	Unmodified	_GQTTVQVRV_					0	0	0		ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2828063964844	2	494.282723	986.550893	-0.8028	-0.00039681	0.66001	0.00032623	-0.14279	-7.0577E-05	494.28296768154325	40.036	0.60807	40.059	39.741	40.349	0.023006					40	16	3	0	0	0	0.03666	2	3434	3434;3446		136.27	69.839	1	1861900			21086	8655	14528	14561	24328;24329	24328					0.057079746747604077
GQTVNLQAV	9	Unmodified	_GQTVNLQAV_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2568054199219	2	465.256174	928.497795	-0.79213	-0.00036854	0.95678	0.00044515	0.16465	7.6605E-05	465.2564807158713	54.573	0.8311	54.573	54.285	55.116	0					60	23	4	0	0	0	0.014034	2	5987	5974;5987		166.68	42.69	1	4135100			21087	1387	14529	14562	24330;24331	24331					0.03068596892092046
GQTVNLQAV	9	Unmodified	_GQTVNLQAV_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2568054199219	2	465.256174	928.497795	0.037134	1.7277E-05	0.33214	0.00015453	0.36927	0.0001718	465.2562177585001	54.678	0.84167	54.527	54.191	55.033	-0.15036					61	23	4	0	0	0	0.013293	2	5962	5962;5974		176.09	42.274	1	4108400			21088	1387	14529	14562	24332;24333	24332					0.03068596892092046
GQTVNLQAV	9	Unmodified	_GQTVNLQAV_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.25689697265625	2	465.256174	928.497795	1.3343	0.0006208	-0.9693	-0.00045097	0.36503	0.00016983	465.2556126154286	54.346	0.76048	54.444	54.188	54.949	0.098015					59	21	4	0	0	0	0.013293	2	5864	5864;5874		180.87	52.008	1	4509000			21089	1387	14529	14562	24334;24335	24334					0.03068596892092046
GQVEIHHGA	9	Unmodified	_GQVEIHHGA_					0	0	0			REV__ENST00000308020.5_1_11:490050-490476:+|nuORF	REV__ENST00000308020.5_1_11:490050-490476:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.2381896972656	2	474.238316	946.462078	1.1562	0.00054833	-0.92639	-0.00043933	0.22983	0.000109	474.2377342674611	72.309	0.9318	72.309	71.978	72.91	0					47	22	3	0	0	0	0.62163	1	8808	8808		51.335	8.4712	1	1147300	+		21090	30149	14530	14563	24336	24336					-0.0132944056491624
GQVERAVVI	9	Unmodified	_GQVERAVVI_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.78759765625	2	485.787641	969.56073	-0.82555	-0.00040104	0.041703	2.0259E-05	-0.78385	-0.00038078	485.78768262236537	44.805	1.0306	44.805	44.247	45.278	0					88	29	4	0	0	0	0.22902	4	4322	4297;4310;4322;4334		85.161	16.374	1	16599000			21091	5939	14531	14564	24337;24338;24339;24340	24339					0.07473162680128098
GQVERAVVI	9	Unmodified	_GQVERAVVI_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7869873046875	2	485.787641	969.56073	-0.98183	-0.00047696	0.22137	0.00010754	-0.76046	-0.00036942	485.7877679846316	44.956	0.95782	44.807	44.256	45.214	-0.1488					84	27	4	0	0	0	0.22902	4	4316	4303;4316;4328;4342		85.161	16.374	1	17271000			21092	5939	14531	14564	24341;24342;24343;24344	24342					0.07473162680128098
GQVERAVVI	9	Unmodified	_GQVERAVVI_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7875061035156	2	485.787641	969.56073	-0.63293	-0.00030747	-0.19075	-9.2665E-05	-0.82368	-0.00040013	485.7875273592426	44.827	1.1312	44.864	44.306	45.437	0.0369					97	32	4	0	0	0	0.22902	3	4240	4240;4253;4265		85.161	16.374	1	15896000			21093	5939	14531	14564	24345;24346;24347	24345					0.07473162680128098
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.72216796875	2	415.721967	829.429381	0.9182	0.00038171	-1.0632	-0.00044199	-0.14498	-6.0271E-05	415.7215270792915	42.337	1.7332	42.337	41.888	43.621	0					112	48	6	0	0	0	0.013293	6	3863	3863;3871;3883;3895;3908;3920		190.52	80.181	1	35099000		+	21094	514	14532	14565	24348;24349;24350;24351;24352;24353	24348					0.007843523122346596
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.7220153808594	2	415.721967	829.429381	0.24359	0.00010127	-0.24969	-0.0001038	-0.0061009	-2.5363E-06	415.7218805467922	42.489	1.4975	42.357	42.049	43.547	-0.13219					105	41	5	0	0	0	0.013293	6	3889	3869;3877;3889;3901;3914;3928		205.58	93.934	1	33130000		+	21095	514	14532	14565	24354;24355;24356;24357;24358;24359	24356					0.007843523122346596
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	ENSG00000171345|ENST00000361566|KRT19	ENSG00000171345|ENST00000361566|KRT19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.7220153808594	2	415.721967	829.429381	0.016436	6.8328E-06	-0.056136	-2.3337E-05	-0.0397	-1.6504E-05	415.7219608471694	42.35	1.5324	42.376	42.056	43.588	0.026012					109	42	6	0	0	0	0.013293	6	3810	3810;3820;3832;3844;3858;3871		190.52	78.87	1	35024000		+	21096	514	14532	14565	24360;24361;24362;24363;24364;24365	24360					0.007843523122346596
GQVHLQTQ	8	Unmodified	_GQVHLQTQ_					0	0	0		ENST00000574129.5_1_17:79680521-79687104:+|nuORF	ENST00000574129.5_1_17:79680521-79687104:+|nuORF	ENST00000574129.5_1_17:79680521-79687104:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2689208984375	2	455.740691	909.466829	-0.81158	-0.00036987	1.1177	0.00050938	0.30612	0.00013951	455.74097999620096	27.676	0.73741	27.508	27.23	27.967	-0.16816					38	17	3	0	0	0	0.027866	1	1567	1567		49.442	22.749	1	714510			21097	17080	14533	14566	24366	24366					0.008474435778452971
GQVIIHNI	8	Unmodified	_GQVIIHNI_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.26318359375	2	447.263802	892.513051	0.050137	2.2425E-05	-0.87097	-0.00038955	-0.82083	-0.00036713	447.2634302384659	45.938	1.7688	45.938	45.342	47.111	0					148	49	6	0	0	0	0.1848	6	4508	4487;4497;4508;4520;4532;4545		143.02	32.682	1	36805000			21098	38151;4848	14534	14567	24367;24368;24369;24370;24371;24372	24369					0.06249508479936594
GQVIIHNI	8	Unmodified	_GQVIIHNI_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.2635803222656	2	447.263802	892.513051	-0.67501	-0.00030191	0.020614	9.2197E-06	-0.6544	-0.00029269	447.26381326087085	46.035	1.9516	45.884	45.211	47.162	-0.15156					151	54	5	0	0	0	0.1848	6	4501	4479;4490;4501;4513;4525;4538		143.02	36.604	1	28901000			21099	38151;4848	14534	14567	24373;24374;24375;24376;24377;24378	24375					0.06249508479936594
GQVIIHNI	8	Unmodified	_GQVIIHNI_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.2636413574219	2	447.263802	892.513051	-0.15184	-6.7913E-05	-0.53546	-0.00023949	-0.68731	-0.00030741	447.26356717746916	45.92	1.8177	45.972	45.318	47.136	0.051395					144	51	5	0	0	0	0.1848	6	4439	4416;4428;4439;4450;4462;4476		143.02	43.502	1	31003000			21100	38151;4848	14534	14567	24379;24380;24381;24382;24383;24384	24381					0.06249508479936594
GQVILESTLN	10	Unmodified	_GQVILESTLN_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2802734375	2	537.295496	1072.57644	-1.0686	-0.00057413	-0.48917	-0.00026283	-1.5577	-0.00083696	537.295243290647	42.631	0.65311	42.405	42.22	42.873	-0.22597					22	16	2	0	0	0	0.03519	1	3823	3823		44.377	7.9304	1	232230	+		21101	21252	14535	14568	24385	24385					0.04305404406522939
GQVLEFQC	8	Unmodified	_GQVLEFQC_					0	0	0		ENST00000007414.7_1_17:45886337-45886826:-|nuORF	ENST00000007414.7_1_17:45886337-45886826:-|nuORF	ENST00000007414.7_1_17:45886337-45886826:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.22015380859375	2	462.218203	922.421853	0.073865	3.4142E-05	2.995	0.0013843	3.0688	0.0014185	462.2198513611375	60.198	0.7754	60.198	59.88	60.656	0					59	20	5	0	0	0	0.47665	2	6923	6908;6923		87.754	10.908	1	3541600			21102	11098	14536	14569	24386;24387	24387					-0.04246123279699532
GQVLEFQC	8	Unmodified	_GQVLEFQC_					0	0	0		ENST00000007414.7_1_17:45886337-45886826:-|nuORF	ENST00000007414.7_1_17:45886337-45886826:-|nuORF	ENST00000007414.7_1_17:45886337-45886826:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.2201232910156	2	462.218203	922.421853	-0.98446	-0.00045503	4.0615	0.0018773	3.0771	0.0014223	462.22030992006717	60.103	0.93896	60.182	59.9	60.839	0.078888					63	24	4	0	0	0	0.56592	1	6810	6810		79.451	2.6044	1	2567400			21103	11098	14536	14569	24388	24388					-0.04246123279699532
GQVLHQGL	8	Unmodified	_GQVLHQGL_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK;REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.27117919921875	2	426.240327	850.466101	-0.54353	-0.00023167	3.1302	0.0013342	2.5866	0.0011025	426.2419274837367	39.426	0.28573	39.45	39.349	39.635	0.023727					11	7	2	0	0	0	0.027866	1	3328	3328		31.955	3.7006	1	70796	+		21104	26240;36906	14537	14570	24389	24389					0.0348864892880556
GQVLIGDVL	9	Unmodified	_GQVLIGDVL_					0	0	0		nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU	nc|ENSG00000164066|Q9ULD6-4|INTU	nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.31341552734375	2	457.271293	912.528032	-0.41272	-0.00018873	0.033134	1.5151E-05	-0.37959	-0.00017357	457.27084655504507	44.652	0.74744	44.652	44.151	44.898	0					39	21	3	0	0	0	0.024021	1	4208	4208		40.778	0	1	1642700			21105	7201	14538	14571	24390	24390					0.06826955557278325
GQVLQFLI	8	Unmodified	_GQVLQFLI_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2765808105469	2	459.276378	916.538203	-0.83227	-0.00038224	0.89695	0.00041195	0.064681	2.9706E-05	459.27661263750286	91.365	0.72672	91.365	91.133	91.86	0					45	16	4	0	0	0	0.21202	1	11578	11578		138.48	19.258	1	1816900			21106	6477	14539	14572	24391	24391					0.07659563282516046
GQVLQFLI	8	Unmodified	_GQVLQFLI_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2768859863281	2	459.276378	916.538203	-0.21358	-9.8093E-05	0.33158	0.00015229	0.118	5.4193E-05	459.27632927096215	91.388	0.76231	91.375	91.115	91.878	-0.012383					46	17	4	0	0	0	0.12427	3	11538	11527;11538;11550		153.88	34.664	1	1607200			21107	6477	14539	14572	24392;24393;24394	24393					0.07659563282516046
GQVLRCVTE	9	Unmodified	_GQVLRCVTE_					0	0	0		ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.79815673828125	2	502.763309	1003.51206	0.1447	7.2749E-05	0.12395	6.2315E-05	0.26864	0.00013506	502.76229342569826	42.516	0.6401	42.516	42.255	42.895	0					26	17	2	0	0	0	0.024323	1	3923	3923		35.618	0	1	225960			21108	6109	14540	14573	24395	24395					0.010449260487121137
GQVLTVLRI	9	Unmodified	_GQVLTVLRI_					0	0	0		nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.8208312988281	2	499.821484	997.628415	-0.015366	-7.6802E-06	0.22925	0.00011459	0.21389	0.00010691	499.82147550642753	67.86	0.90913	67.572	67.148	68.057	-0.28834					50	22	3	0	0	0	0.37611	2	8082	8073;8082		67.494	11.858	1	1590600			21109	6616	14541	14574	24396;24397	24397					0.12950612610927692
GQVLTVLRI	9	Unmodified	_GQVLTVLRI_					0	0	0		nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.8214416503906	2	499.821484	997.628415	0.28723	0.00014356	-0.14903	-7.4487E-05	0.1382	6.9077E-05	499.8212970272846	67.584	1.095	67.608	67.028	68.123	0.023903					59	27	4	0	0	0	0.30449	1	7989	7989		75.043	10.836	1	1762800			21110	6616	14541	14574	24398	24398					0.12950612610927692
GQVLTVLRI	9	Unmodified	_GQVLTVLRI_					0	0	0		nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	nc|ENSG00000157693|Q5VZI3-2|TMEM268	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.821484	997.628415	-0.057794	-2.8886E-05	-0.28104	-0.00014047	-0.33884	-0.00016936	499.8215893183822	67.696	0.46107	67.462	67.175	67.636	-0.23376	-0.070715	-0.0003524	NaN	75.043	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60567			21111	6616	14541	14574							0.12950612610927692
GQVLVKPL	8	Unmodified	_GQVLVKPL_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.26593017578125	2	427.278921	852.543289	0.0068177	2.9131E-06	-2.6932	-0.0011508	-2.6864	-0.0011479	427.2779344769569	42.555	0.32396	42.555	42.355	42.679	0					12	8	2	0	0	0	0.027866	1	3898	3898		33.516	0	1	153860	+		21112	25249	14542	14575	24399	24399					0.11111867145120868
GQWASVIRV	9	Unmodified	_GQWASVIRV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3;ENST00000562722.1_1_16:70597761-70599451:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2878112792969	2	508.287808	1014.56106	-0.85415	-0.00043416	0.3496	0.0001777	-0.50455	-0.00025646	508.2879749543643	61.847	0.58258	61.847	61.566	62.149	0					53	15	4	0	0	0	0.013337	4	7183	7161;7171;7183;7196		190.26	66.325	1	15657000			21113	9787	14543	14576	24400;24401;24402;24403	24402					0.05436582400000134
GQWASVIRV	9	Unmodified	_GQWASVIRV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3;ENST00000562722.1_1_16:70597761-70599451:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.28790283203125	2	508.287808	1014.56106	-0.30877	-0.00015694	-0.28445	-0.00014458	-0.59322	-0.00030153	508.28765205151046	62.047	0.68549	61.821	61.534	62.219	-0.22663					56	18	4	0	0	0	0.013337	4	7169	7158;7169;7182;7194		176.44	66.325	1	14918000			21114	9787	14543	14576	24404;24405;24406;24407	24405					0.05436582400000134
GQWASVIRV	9	Unmodified	_GQWASVIRV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3;ENST00000562722.1_1_16:70597761-70599451:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2877502441406	2	508.287808	1014.56106	-0.59592	-0.0003029	-0.039933	-2.0297E-05	-0.63585	-0.00032319	508.2877493078931	61.764	0.65632	61.835	61.511	62.168	0.070469					60	17	4	0	0	0	0.013337	4	7071	7061;7071;7084;7095		204.62	82.449	1	14131000			21115	9787	14543	14576	24408;24409;24410;24411	24409					0.05436582400000134
GQWGRAWEV	9	Unmodified	_GQWGRAWEV_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7672729492188	2	544.76724	1087.51993	-0.28121	-0.00015319	0.15469	8.4268E-05	-0.12652	-6.8924E-05	544.7671795427893	58.24	0.98767	58.24	57.872	58.86	0					79	25	4	0	0	0	0.10174	3	6587	6587;6598;6610		110.12	50.002	1	4374500			21116	8319	14544	14577	24412;24413;24414	24412					-0.02033178639499056
GQWGRAWEV	9	Unmodified	_GQWGRAWEV_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7669067382812	2	544.76724	1087.51993	-1.2987	-0.0007075	1.194	0.00065047	-0.10467	-5.7023E-05	544.7677158522947	58.376	0.94627	58.189	57.919	58.866	-0.18705					67	25	4	0	0	0	0.2101	1	6596	6596		87.696	25.589	1	3118200			21117	8319	14544	14577	24415	24415					-0.02033178639499056
GQWGRAWEV	9	Unmodified	_GQWGRAWEV_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.76724	1087.51993	-1.0365	-0.00056467	1.0213	0.00055639	-0.015199	-8.2801E-06	544.7676186425306	57.981	1.1713	58.072	57.683	58.855	0.091217	-0.094533	0.00017418	NaN	110.12	69	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3026700			21118	8319	14544	14577							-0.02033178639499056
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;ENST00000477547.6_1_3:10345637-10359739:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.301025390625	2	573.301113	1144.58767	-1.3987	-0.00080185	0.87047	0.00049904	-0.52819	-0.00030281	573.3015480956418	32.551	0.75625	32.551	32.262	33.018	0					46	19	3	0	0	0	0.013946	3	2259	2259;2270;2283		181.41	34.622	1	1912800			21119	6568	14545	14578	24416;24417;24418	24416					0.02116226500652374
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;ENST00000477547.6_1_3:10345637-10359739:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.3008422851562	2	573.301113	1144.58767	-0.44854	-0.00025715	-0.38827	-0.00022259	-0.83681	-0.00047974	573.300980983974	32.312	0.88082	32.324	31.863	32.743	0.011799					59	22	4	0	0	0	0.014475	2	2213	2213;2225		185.72	39.071	1	1625000			21120	6568	14545	14578	24419;24420	24419					0.02116226500652374
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;ENST00000477547.6_1_3:10345637-10359739:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.3005981445312	2	573.301113	1144.58767	-0.92363	-0.00052952	0.58663	0.00033631	-0.33701	-0.00019321	573.3012892504075	32.086	0.88866	32.149	31.839	32.728	0.062885					58	22	4	0	0	0	0.034407	1	2162	2162		138.06	25.651	1	1683500			21121	6568	14545	14578	24421	24421					0.02116226500652374
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8084106445312	2	531.808377	1061.6022	-0.96045	-0.00051078	0.59777	0.0003179	-0.36268	-0.00019288	531.8087295902412	47.67	1.8916	47.67	47.181	49.072	0					185	55	6	0	0	0	0.049585	10	4819	4774;4784;4795;4807;4819;4832;4844;4857;4869;4895		128.86	59.129	1	62945000			21122	5592	14546	14579	24422;24423;24424;24425;24426;24427;24428;24429;24430;24431	24426					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8078002929688	2	531.808377	1061.6022	-0.72977	-0.0003881	0.3308	0.00017592	-0.39897	-0.00021218	531.80857254123	47.872	1.5636	47.719	47.3	48.864	-0.15301					173	45	5	0	0	0	0.06122	8	4790	4781;4790;4801;4813;4826;4838;4851;4863		124.59	54.967	1	57542000			21123	5592	14546	14579	24432;24433;24434;24435;24436;24437;24438;24439	24433					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8099365234375	2	531.808377	1061.6022	-1.0372	-0.00055159	0.8659	0.00046049	-0.17129	-9.1091E-05	531.8088488030676	47.632	1.6156	47.691	47.282	48.898	0.059097					159	46	6	0	0	0	0.034181	7	4757	4709;4720;4733;4745;4757;4770;4782		138.24	63.199	1	57501000			21124	5592	14546	14579	24440;24441;24442;24443;24444;24445;24446	24444					0.0738634343947524
GQWLGGRQI	9	Unmodified	_GQWLGGRQI_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000474699.1_1_2:70443958-70451859:-|nuORF;nc|ENSG00000116001|P31483-3|TIA1;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7776794433594	2	507.777608	1013.54066	0.17766	9.0213E-05	-0.52199	-0.00026506	-0.34433	-0.00017484	507.77734733203977	49.487	0.5877	49.487	49.106	49.694	0					41	15	3	0	0	0	0.11092	3	5113	5104;5113;5125		108.09	23.172	1	13914000			21125	3509	14547	14580	24447;24448;24449	24448					0.03443411740192914
GQWLGGRQI	9	Unmodified	_GQWLGGRQI_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000474699.1_1_2:70443958-70451859:-|nuORF;nc|ENSG00000116001|P31483-3|TIA1;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7772521972656	2	507.777608	1013.54066	-0.10698	-5.4321E-05	-0.0094479	-4.7974E-06	-0.11643	-5.9118E-05	507.7775859453436	49.694	0.70325	49.543	49.078	49.781	-0.1512					50	18	4	0	0	0	0.06122	2	5113	5113;5125		124.59	36.84	1	13692000			21126	3509	14547	14580	24450;24451	24450					0.03443411740192914
GQWLGGRQI	9	Unmodified	_GQWLGGRQI_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000474699.1_1_2:70443958-70451859:-|nuORF;nc|ENSG00000116001|P31483-3|TIA1;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.77783203125	2	507.777608	1013.54066	-1.4586	-0.00074065	1.2728	0.00064632	-0.18577	-9.4331E-05	507.7782014582353	49.371	0.59675	49.445	49.096	49.693	0.074192					46	15	4	0	0	0	0.06122	2	5032	5020;5032		124.59	42.289	1	12970000			21127	3509	14547	14580	24452;24453	24453					0.03443411740192914
GQYSKPPVK	9	Unmodified	_GQYSKPPVK_					0	0	0		USP13-PEX5L|1|fusion;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13-PEX5L|1|fusion	USP13-PEX5L|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.763916015625	2	502.282192	1002.54983	-0.42956	-0.00021576	3.524	0.00177	3.0944	0.0015543	502.7854483359092	31.82	0.4	31.82	31.549	31.949	0					13	9	2	0	0	0	0.024477	1	2149	2149		20.947	4.4738	1	202100			21128	38135	14548	14581	24454	24454					0.048657603058586574
GQYTDLLRL	9	Unmodified	_GQYTDLLRL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.79833984375	2	539.798206	1077.58186	0.14282	7.7096E-05	0.50571	0.00027298	0.64854	0.00035008	539.7985005850228	70.419	1.2742	70.419	70.14	71.415	0					87	32	5	0	0	0	0.016542	5	8516	8485;8493;8504;8516;8528		154.12	46.031	1	21227000			21129	10514	14549	14582	24455;24456;24457;24458;24459	24458					0.0461712798901317
GQYTDLLRL	9	Unmodified	_GQYTDLLRL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7984619140625	2	539.798206	1077.58186	0.34487	0.00018616	0.13375	7.2199E-05	0.47862	0.00025836	539.7983238203138	70.77	1.2604	70.477	70.2	71.46	-0.29292					89	32	5	0	0	0	0.015512	3	8527	8503;8527;8539		159.28	52.268	1	21345000			21130	10514	14549	14582	24460;24461;24462	24461					0.0461712798901317
GQYTDLLRL	9	Unmodified	_GQYTDLLRL_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7989501953125	2	539.798206	1077.58186	-0.77982	-0.00042094	1.0651	0.00057496	0.28532	0.00015401	539.7988202197935	70.517	1.4091	70.53	70.246	71.655	0.012421					91	35	5	0	0	0	0.015512	4	8438	8419;8426;8438;8450		159.28	52.268	1	23883000			21131	10514	14549	14582	24463;24464;24465;24466	24465					0.0461712798901317
GRAALRDGR	9	Unmodified	_GRAALRDGR_					0	0	0			REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3128356933594	2	486.278306	970.54206	-0.0034366	-1.6711E-06	2.2116	0.0010754	2.2081	0.0010738	486.2792847026519	40.518	0.30621	40.518	40.281	40.587	0					13	8	2	0	0	0	0.024344	1	3532	3532		30.318	4.7437	1	362270			21132	29537	14550	14583	24467	24467					0.055610458289379494
GRAANLLH	8	Unmodified	_GRAANLLH_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2456970214844	2	426.245944	850.477334	-0.42493	-0.00018113	0.74288	0.00031665	0.31794	0.00013552	426.2461978843956	89.569	1.9508	89.407	88.263	90.214	-0.1626					72	46	2	0	0	0	1.0574	1	10925	10925		26.796	1.3459	1	716840	+		21133	28427	14551	14584	24468	24468					0.046114710229517186
GRAARPDVDP	10	Unmodified	_GRAARPDVDP_					0	0	0			REV__ENST00000404261.8_1_19:17392539-17392683:+|nuORF	REV__ENST00000404261.8_1_19:17392539-17392683:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.7803955078125	2	527.275429	1052.53631	0.28334	0.0001494	1.2594	0.00066404	1.5427	0.00081344	527.7785329544568	82.156	1.2942	81.936	81.53	82.824	-0.22015					67	29	5	0	0	0	0.96965	1	9887	9887		49.442	1.5259	1	1420800	+		21134	31898	14552	14585	24469	24469					0.012139025266151293
GRAAVREGR	9	Unmodified	_GRAAVREGR_					0	0	0			REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2918701171875	2	486.278306	970.54206	0.1891	9.1957E-05	-0.016927	-8.2314E-06	0.17218	8.3726E-05	486.2783322982576	81.89	0.2094	81.697	81.634	81.844	-0.19334					5	4	2	0	0	0	0.024506	1	9855	9855		2.9294	0	1	175220	+		21135	26171	14553	14586	24470	24470					0.05561045828949318
GRAGGLVGW	9	Unmodified	_GRAGGLVGW_					0	0	0		ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7406005859375	2	436.740494	871.466435	-0.26804	-0.00011706	0.2922	0.00012761	0.024159	1.0551E-05	436.74050071687316	45.015	0.75349	45.015	44.725	45.478	0					48	21	3	0	0	0	0.70186	1	4355	4355		45.952	3.4775	1	2204300			21136	15746	14554	14587	24471	24471					0.02556068648652854
GRAGGLVGW	9	Unmodified	_GRAGGLVGW_					0	0	0		ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.7404479980469	2	436.740494	871.466435	-0.51794	-0.00022621	0.72406	0.00031623	0.20612	9.0019E-05	436.7406770052515	45.162	0.64911	45.013	44.697	45.346	-0.1488					45	18	3	0	0	0	0.67308	1	4361	4361		47.916	5.4411	1	2215300			21137	15746	14554	14587	24472	24472					0.02556068648652854
GRAGGLVGW	9	Unmodified	_GRAGGLVGW_					0	0	0		ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	436.740494	871.466435	-0.86206	-0.0003765	0.88508	0.00038655	0.023018	1.0053E-05	436.74071095154585	45.042	0.54384	44.943	44.71	45.254	-0.099449	-0.059258	0.00041374	NaN	47.916	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286470			21138	15746	14554	14587							0.02556068648652854
GRAGGLVGW	9	Unmodified	_GRAGGLVGW_					0	0	0		ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	436.740494	871.466435	-0.23257	-0.00010157	0.4509	0.00019693	0.21834	9.5356E-05	436.74046539974944	45.21	0.57769	44.957	44.748	45.325	-0.25252	-0.044969	3.4493E-05	NaN	47.916	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356470			21139	15746	14554	14587							0.02556068648652854
GRAGGLVGW	9	Unmodified	_GRAGGLVGW_					0	0	0		ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	ENST00000506530.5_1_4:1323389-1323932:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	436.740494	871.466435	0.042879	1.8727E-05	0.26668	0.00011647	0.30956	0.0001352	436.7403924974263	45.198	0.56889	44.987	44.715	45.284	-0.21109	-0.014774	-0.00012642	NaN	47.916	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497760			21140	15746	14554	14587							0.02556068648652854
GRAGRPGLPG	10	Unmodified	_GRAGRPGLPG_					0	0	0		nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3;nc|ENSG00000169031|Q01955-5|COL4A3;nc|ENSG00000169031|Q01955-4|COL4A3;nc|ENSG00000169031|Q01955-3|COL4A3;COL4A3|p.G1491Afs*38|1|0.78|ENSG00000169031|chr2:227308907-227308907|G/-|frameshift_variant	nc|ENSG00000169031|Q01955-2|COL4A3	nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.2799072265625	2	469.26995	936.525347	0.030821	1.4464E-05	-3.1761	-0.0014904	-3.1452	-0.001476	469.2683634545651	93.866	0.76319	93.872	93.562	94.325	0.0059814					33	18	2	0	0	0	0.03519	1	11852	11852		27.882	14.923	1	543180			21141	7893	14555	14588	24473	24473					0.05454544942995199
GRAGSVVTPI	10	Unmodified	_GRAGSVVTPI_					0	0	0			REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7929382324219	2	478.779816	955.545079	-0.5345	-0.00025591	0.47195	0.00022596	-0.062545	-2.9945E-05	478.7801217243936	45.89	0.79778	45.738	45.446	46.244	-0.15156					54	22	4	0	0	0	0.03519	1	4457	4457		44.377	17.684	1	1592700	+		21142	25068	14556	14589	24474	24474					0.0655287616308442
GRAHLWHSF	9	Unmodified	_GRAHLWHSF_					0	0	0			REV__ENST00000328914.4_1_7:4805670-4805937:+|nuORF	REV__ENST00000328914.4_1_7:4805670-4805937:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.29541015625	2	555.783225	1109.5519	-0.77608	-0.00043133	-4.2474	-0.0023607	-5.0235	-0.002792	555.7805643493775	30.209	1.5819	30.218	29.839	31.42	0.0086689					52	37	3	0	0	0	0.024427	1	1960	1960		42.396	1.618	1	96498	+		21143	30437	14557	14590	24475	24475					0.0015023383432435367
GRAILYNL	8	Unmodified	_GRAILYNL_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2221374511719	2	460.271627	918.528701	-0.06573	-3.0254E-05	0.87267	0.00040166	0.80694	0.00037141	460.272060142532	42.904	1.2878	42.904	42.187	43.475	0					66	35	2	0	0	0	0.027866	1	3874	3874		12.959	0	1	3564800	+		21144	20541	14558	14591	24476	24476					0.0661779499697559
GRAKATSIIE	10	Unmodified	_GRAKATSIIE_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.240966796875	2	523.303655	1044.59276	-0.039517	-2.0679E-05	-0.22024	-0.00011525	-0.25975	-0.00013593	523.30348976591	29.968	0.67683	29.818	29.542	30.219	-0.14952					44	15	4	0	0	0	0.03519	1	1903	1903		21.96	0	1	752770	+		21145	22435	14559	14592	24477	24477					0.07224530363305348
GRAKTPPALNL	11	Unmodified	_GRAKTPPALNL_					0	0	0			REV__ENST00000568322.5_1_16:71901919-71918589:-|nuORF	REV__ENST00000568322.5_1_16:71901919-71918589:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3115234375	2	569.340572	1136.66659	-1.1704	-0.00066636	1.6176	0.00092099	0.44724	0.00025463	569.3415110667133	52.376	0.184	52.107	52.054	52.238	-0.26903					6	4	2	0	0	0	0.02475	1	5427	5427		42.864	21.917	1	65176	+		21146	35339	14560	14593	24478	24478					0.10372498525589435
GRALAVPAL	9	Unmodified	_GRALAVPAL_					0	0	0		ENST00000250340.8_1_19:51228745-51228910:+|nuORF	ENST00000250340.8_1_19:51228745-51228910:+|nuORF	ENST00000250340.8_1_19:51228745-51228910:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	434.2742614746094	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.139	1	82.925	82.425	83.425	-0.21426								0	0	0	0.60629	1	10018	10018		38.806	8.3025	1				21147	11346	14561	14594	24479	24479					0.09518098859598467
GRALHVDL	8	Unmodified	_GRALHVDL_					0	0	0		ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	2	440.753601	879.49265	-0.49988	-0.00022032	0.78159	0.00034449	0.28171	0.00012417	440.7537305806047	31.298	0.94924	31.298	30.92	31.869	0					30	22	2	0	0	0	0.027866	1	2078	2078		44.117	9.9443	1	108270			21148	9155	14562	14595	24480	24480					0.048083378201340565
GRALLKLVLP	10	Unmodified	_GRALLKLVLP_					0	0	0			REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8080444335938	2	540.368601	1078.72265	0.15629	8.4456E-05	-0.71517	-0.00038646	-0.55888	-0.000302	540.3684893907559	63.532	0.22221	63.532	63.373	63.595	0					6	5	2	0	0	0	0.03519	1	7446	7446		6.3127	2.9026	1	66758	+		21149	32622	14563	14596	24481	24481					0.18643751433069156
GRALWPRA	8	Unmodified	_GRALWPRA_					0	0	0		ENST00000472100.5_1_7:1468322-1474217:-|nuORF	ENST00000472100.5_1_7:1468322-1474217:-|nuORF	ENST00000472100.5_1_7:1468322-1474217:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.23040771484375	2	463.769586	925.524619	0.46025	0.00021345	-1.1501	-0.00053338	-0.68984	-0.00031993	463.76878257350614	37.361	0.51561	37.361	37.081	37.596	0					18	13	2	0	0	0	0.027866	1	3026	3026		33.516	0	1	150800			21150	14983	14564	14597	24482	24482					0.05887750293936733
GRAPGRLPED	10	Unmodified	_GRAPGRLPED_					0	0	0		ENST00000343820.9_1_18:3449712-3450399:+|nuORF	ENST00000343820.9_1_18:3449712-3450399:+|nuORF	ENST00000343820.9_1_18:3449712-3450399:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2870483398438	2	534.283254	1066.55196	-0.18865	-0.00010079	2.674	0.0014287	2.4854	0.0013279	534.2849371700632	106.21	1.4778	106.08	105.4	106.88	-0.1238					106	54	3	0	0	0	1.0781	1	13201	13201		35.618	0	1	251420			21151	12534	14565	14598	24483	24483					0.021341890436588073
GRAPYLLSL	9	Unmodified	_GRAPYLLSL_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7889099121094	2	495.292559	988.570566	-0.49425	-0.0002448	-3.0803	-0.0015256	-3.5745	-0.0017704	495.2907314065041	30.389	0.37583	30.397	30.289	30.665	0.0086708					14	8	3	0	0	0	0.02435	1	1943	1943		34.173	8.7224	1	437570	+		21152	21321	14566	14599	24484	24484					0.07582350685515848
GRAPYLLSL	9	Unmodified	_GRAPYLLSL_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.292559	988.570566	-0.56102	-0.00027787	-7.4378	-0.0036839	-7.9988	-0.0039618	495.2887686819275	30.721	0.1727	30.543	30.41	30.583	-0.17818	0.072916	-0.0027785	NaN	34.173	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25934	+		21153	21321	14566	14599							0.07582350685515848
GRAQSKPVTR	10	Unmodified	_GRAQSKPVTR_					0	0	0			REV__ENST00000557925.1_1_19:8315741-8320784:+|nuORF	REV__ENST00000557925.1_1_19:8315741-8320784:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.311767578125	2	550.320171	1098.62579	0.18451	0.00010154	3.6166	0.0019903	3.8011	0.0020918	550.3220553164717	32.127	0.6077	31.935	31.685	32.293	-0.19261					24	13	2	0	0	0	0.03519	1	2189	2189		39.253	18.306	1	292640	+		21154	35084	14567	14600	24485	24485					0.08042157205977674
GRARRVGG	8	Unmodified	_GRARRVGG_					0	0	0		ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	ENST00000573331.5_1_17:7297739-7306647:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.7618408203125	2	414.749185	827.483817	-0.33763	-0.00014003	-3.1487	-0.0013059	-3.4863	-0.0014459	414.74810677996106	88.018	0.30773	87.839	87.733	88.041	-0.17875					9	7	2	0	0	0	0.027866	1	10742	10742		25.45	0	1	140630			21155	17071	14568	14601	24486	24486					0.06317408974337013
GRARSGIR	8	Unmodified	_GRARSGIR_					0	0	0			REV__ENST00000282516.12_2_5:36876878-36877172:+|nuORF	REV__ENST00000282516.12_2_5:36876878-36877172:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.2536926269531	2	436.762292	871.510031	0.068018	2.9708E-05	2.5186	0.0011	2.5866	0.0011297	436.763229726291	50.573	0.4798	50.461	50.232	50.712	-0.11163					21	12	3	0	0	0	0.027866	1	5123	5123		17.365	0	1	532780	+		21156	29901	14569	14602	24487	24487					0.06913678145815538
GRARVTRAR	9	Unmodified	_GRARVTRAR_					0	0	0			REV__ENST00000535549.5_1_11:128391964-128392117:-|nuORF	REV__ENST00000535549.5_1_11:128391964-128392117:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.791015625	2	521.820673	1041.62679	-0.57964	-0.00030247	-2.7233	-0.0014211	-3.303	-0.0017236	521.8202821127036	21.359	0.1958	21.269	21.109	21.304	-0.090092					5	3	2	0	0	0	0.024427	1	643	643		34.173	0	1	12714	+		21157	34675	14570	14603	24488	24488					0.1076441636553227
GRASKVWAF	9	Unmodified	_GRASKVWAF_					0	0	0			REV__ENST00000272983.12_1_2:242089243-242089768:+|nuORF	REV__ENST00000272983.12_1_2:242089243-242089768:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.833740234375	2	511.282526	1020.5505	-0.169	-8.6406E-05	1.2416	0.00063479	1.0726	0.00054838	511.28385882785113	101.89	1.4213	101.9	101.17	102.59	0.0073471					51	32	3	0	0	0	0.024457	1	12976	12976		37.159	16.212	1	76365	+		21158	29818	14571	14604	24489	24489					0.04104599745562609
GRASPLGQGQ	10	Unmodified	_GRASPLGQGQ_					0	0	0		ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000575477.5_1_17:2497248-2541480:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2906799316406	2	485.756872	969.499192	-0.72048	-0.00034998	1.3493	0.00065544	0.62885	0.00030547	485.75736786031865	27.653	0.63911	27.653	27.398	28.037	0					34	16	3	0	0	0	0.03519	1	1506	1506		67.494	16.158	1	468790			21159	17099	14572	14605	24490	24490					0.013222309808725186
GRASPLGQGQ	10	Unmodified	_GRASPLGQGQ_					0	0	0		ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000575477.5_1_17:2497248-2541480:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2907409667969	2	485.756872	969.499192	-0.51173	-0.00024858	1.884	0.00091516	1.3723	0.00066658	485.75731942054875	27.651	0.64161	27.638	27.352	27.994	-0.012983					22	16	2	0	0	0	0.03519	1	1549	1549		58.23	10.573	1	590740			21160	17099	14572	14605	24491	24491					0.013222309808725186
GRASPLGQGQ	10	Unmodified	_GRASPLGQGQ_					0	0	0		ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000575477.5_1_17:2497248-2541480:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29058837890625	2	485.756872	969.499192	-1.2045	-0.00058509	2.2392	0.0010877	1.0347	0.00050263	485.75758518553215	27.438	0.55235	27.519	27.319	27.872	0.081291					40	14	4	0	0	0	0.03519	1	1426	1426		67.494	42.043	1	738380			21161	17099	14572	14605	24492	24492					0.013222309808725186
GRAWVSPE	8	Unmodified	_GRAWVSPE_					0	0	0		ENSG00000230358|ENST00000424157|SPDYE21;ENSG00000170092|ENST00000625065|SPDYE5	ENSG00000230358|ENST00000424157|SPDYE21	ENSG00000230358|ENST00000424157|SPDYE21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.760498046875	2	451.229959	900.445365	-0.61963	-0.00027959	-1.5985	-0.00072128	-2.2181	-0.0010009	451.2285786850672	39.019	0.31374	38.796	38.577	38.891	-0.22311					11	8	2	0	0	0	0.027866	1	3273	3273		33.516	8.0654	1	293830			21162	10688	14573	14606	24493	24493					-0.008839414508543086
GRCAGACWALL	11	Unmodified	_GRCAGACWALL_					0	0	0			REV__ENSG00000109255|ENST00000264218|NMU	REV__ENSG00000109255|ENST00000264218|NMU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3109130859375	2	560.773154	1119.53175	-1.1471	-0.00064329	-3.8992	-0.0021866	-5.0463	-0.0028298	560.7708025021224	51.61	0.10432	51.697	51.61	51.715	0.087006					4	2	2	0	0	0	0.024752	1	5416	5416		49.442	7.0454	1	55488	+		21163	21787	14574	14607	24494	24494					-0.023230212121688965
GRCGLFFL	8	Unmodified	_GRCGLFFL_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.77984619140625	2	456.741648	911.468743	-0.032991	-1.5068E-05	2.8629	0.0013076	2.8299	0.0012925	456.7428171335958	49.686	0.67967	49.406	49.049	49.729	-0.27977					32	17	3	0	0	0	0.027866	1	4951	4951		44.531	6.7195	1	517450	+		21164	27563	14575	14608	24495	24495					0.009467810621003991
GRCGLMTAQEP	11	Unmodified	_GRCGLMTAQEP_					0	0	0		ENST00000557520.1_1_14:88425979-88431954:-|nuORF;nc|ENSG00000054983|P54803-5|GALC;GALC|p.W629Mfs*9|1|0.24|ENSG00000054983|chr14:87939931-87939932|-/T|frameshift_variant;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC	ENST00000557520.1_1_14:88425979-88431954:-|nuORF	ENST00000557520.1_1_14:88425979-88431954:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.3040161132812	2	581.770808	1161.52706	-1.5228	-0.00088594	-2.2744	-0.0013232	-3.7973	-0.0022091	581.7693247470752	45.906	0.27639	45.754	45.611	45.888	-0.15157					10	7	2	0	0	0	0.024735	1	4487	4487		25.126	12.314	1	109050			21165	1182	14576	14609	24496	24496					-0.047239501456033395
GRCLNNWL	8	Unmodified	_GRCLNNWL_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7521667480469	2	488.245086	974.47562	-0.42615	-0.00020806	-4.3143	-0.0021065	-4.7405	-0.0023145	488.24287887741133	75.579	0.44606	75.335	74.997	75.443	-0.24455					21	11	2	0	0	0	0.027866	1	9226	9226		79.939	0	1	232570			21166	8818	14577	14610	24497	24497					-0.012639060573405914
GRCLSVFRGN	10	Unmodified	_GRCLSVFRGN_					0	0	0			REV__FNDC3A|p.Y1001C|1|0.1|ENSG00000102531|chr13:49201814-49201814|A/G|missense_variant	REV__FNDC3A|p.Y1001C|1|0.1|ENSG00000102531|chr13:49201814-49201814|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.7870483398438	2	554.78765	1107.56075	0.14168	7.8603E-05	-0.74038	-0.00041075	-0.5987	-0.00033215	554.7869911788795	82.404	2.3576	82.223	81.856	84.214	-0.18079					120	54	6	0	0	0	0.72729	1	9959	9959		65.465	5.3471	1	4484300	+		21167	36046	14578	14611	24498	24498					0.011268394084936517
GRCLSVFRGN	10	Unmodified	_GRCLSVFRGN_					0	0	0			REV__FNDC3A|p.Y1001C|1|0.1|ENSG00000102531|chr13:49201814-49201814|A/G|missense_variant	REV__FNDC3A|p.Y1001C|1|0.1|ENSG00000102531|chr13:49201814-49201814|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.7871704101562	2	554.78765	1107.56075	-0.82255	-0.00045634	0.32865	0.00018233	-0.4939	-0.00027401	554.7875324687576	82.335	1.512	82.195	81.827	83.339	-0.14014					97	34	4	0	0	0	0.94316	1	9937	9937		51.193	6.8155	1	4269700	+		21168	36046	14578	14611	24499	24499					0.011268394084936517
GRCNESGC	8	Unmodified	_GRCNESGC_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.1511535644531	2	413.152537	824.290521	-0.32166	-0.00013289	-3.558	-0.00147	-3.8797	-0.0016029	413.1510479166516	81.559	1.1836	81.416	80.9	82.084	-0.14248					74	27	5	0	0	0	0.97924	1	9806	9806		40.573	3.5441	1	1175700	+		21169	23961	14579	14612	24500	24500					-0.12865256919235435
GRCPPAMRLAF	11	Unmodified	_GRCPPAMRLAF_					0	0	0		ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1;ENST00000546727.5_1_12:113545343-113557136:-|nuORF;ENST00000548972.5_1_12:113545343-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.2638244628906	3	406.879327	1217.61615	0.7644	0.00031102	0.71166	0.00028956	1.4761	0.00060058	407.214386277084	21.356	0.87819	21.165	20.735	21.613	-0.19072					24	17	2	0	0	0	0.024727	1	660	660		29.551	0	1	17654			21170	3109	14580	14613	24501	24501					0.016049296045821393
GRCPSPDAAR	10	Unmodified	_GRCPSPDAAR_					0	0	0		ENST00000527986.5_1_10:28813506-28821653:-|nuORF	ENST00000527986.5_1_10:28813506-28821653:-|nuORF	ENST00000527986.5_1_10:28813506-28821653:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7980346679688	2	515.248357	1028.48216	-1.1115	-0.00057269	2.1989	0.001133	1.0874	0.0005603	515.2502049163395	35.671	0.75695	35.671	35.306	36.063	0					41	19	3	0	0	0	0.03519	1	2727	2727		12.812	0	1	176480			21171	16171	14581	14614	24502	24502					-0.03094012896622189
GRCSTPVAPQ	10	Unmodified	_GRCSTPVAPQ_					0	0	0			REV__ENST00000607286.5_1_5:476364-477927:+|nuORF	REV__ENST00000607286.5_1_5:476364-477927:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3080139160156	2	508.253108	1014.49166	-0.51414	-0.00026131	-2.97	-0.0015095	-3.4842	-0.0017708	508.2514696131429	41.82	0.5256	41.588	41.311	41.837	-0.23186					25	13	2	0	0	0	0.03519	1	3673	3673		18.262	0	1	403840	+		21172	35950	14582	14615	24503	24503					-0.015002446110770506
GRDDGAWLL	9	Unmodified	_GRDDGAWLL_					0	0	0			REV__ENSG00000101940|ENST00000376729|WDR13	REV__ENSG00000101940|ENST00000376729|WDR13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.29217529296875	2	501.753798	1001.49304	-0.49322	-0.00024747	-1.2421	-0.00062325	-1.7354	-0.00087072	501.75326233219084	38.804	0.74623	38.804	38.473	39.219	0					33	19	2	0	0	0	0.024263	1	3308	3308		42.396	1.618	1	784100	+		21173	21267	14583	14616	24504	24504					-0.007642872506721687
GRDDKGRNGKG	11	Unmodified	_GRDDKGRNGKG_					0	0	0			REV__ENSG00000204442|ENST00000375915|NALF1	REV__ENSG00000204442|ENST00000375915|NALF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7625122070312	2	580.299967	1158.58538	-1.1671	-0.00067725	-2.5009	-0.0014513	-3.6679	-0.0021285	580.2983665248405	40.193	0.69001	39.963	39.507	40.197	-0.2302					23	17	2	0	0	0	0.024761	1	3376	3376		15.333	2.5214	1	134840	+		21174	28606	14584	14617	24505	24505					0.01243190815557682
GRDKSIFAKLI	11	Unmodified	_GRDKSIFAKLI_					0	0	0			REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|47|3|sense	REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|47|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.376220703125	2	624.377155	1246.73976	0.70575	0.00044065	3.4838	0.0021752	4.1896	0.0026159	624.3791936410059	100.71	0.53059	100.58	100.28	100.81	-0.13364					27	14	2	0	0	0	1.0777	1	12516	12516		17.468	0.10304	1	344240	+		21175	36216	14585	14618	24506	24506					0.12625627248235105
GRDPSRSPK	9	Unmodified	_GRDPSRSPK_					0	0	0		ENST00000530468.5_1_14:24664550-24664712:-|nuORF	ENST00000530468.5_1_14:24664550-24664712:-|nuORF	ENST00000530468.5_1_14:24664550-24664712:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7691650390625	2	500.270147	998.525741	-0.72105	-0.00036072	-0.93889	-0.0004697	-1.6599	-0.00083042	500.770232839716	39.219	1.6566	39.054	38.659	40.316	-0.16459					129	44	6	0	0	0	0.48817	1	3287	3287		60.118	8.7828	1	26558000			21176	16235	14586	14619	24507	24507					0.026419198721896464
GREATLLLV	9	Unmodified	_GREATLLLV_					0	0	0		SLC17A6|p.M395R|1|0.35|ENSG00000091664|chr11:22375991-22375991|T/G|missense_variant	SLC17A6|p.M395R|1|0.35|ENSG00000091664|chr11:22375991-22375991|T/G|missense_variant	SLC17A6|p.M395R|1|0.35|ENSG00000091664|chr11:22375991-22375991|T/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2975769042969	2	486.297842	970.581131	-0.13158	-6.3987E-05	-0.10854	-5.2783E-05	-0.24012	-0.00011677	486.2977452954503	67.653	0.64139	67.365	67.03	67.671	-0.28835					46	15	4	0	0	0	0.32811	1	8053	8053		71.877	3.0906	1	2846800			21177	37878	14587	14620	24508	24508					0.09466333339969424
GREERQGPQRA	11	Unmodified	_GREERQGPQRA_					0	0	0		ENST00000429422.5_2_3:47893042-47893423:-|nuORF	ENST00000429422.5_2_3:47893042-47893423:-|nuORF	ENST00000429422.5_2_3:47893042-47893423:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7296447753906	3	428.556958	1282.64904	-0.6972	-0.00029879	-3.4477	-0.0014775	-4.1449	-0.0017763	428.88934168748335	29.322	0.30329	29.077	28.796	29.099	-0.24524					9	6	2	0	0	0	0.024727	1	1753	1753		5.4129	0	1	51677			21178	14145	14588	14621	24509	24509					0.019025512526468447
GREGQEPQ	8	Unmodified	_GREGQEPQ_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2680358886719	2	450.712131	899.409708	-0.28808	-0.00012984	1.2773	0.00057569	0.98921	0.00044585	450.712600475432	32.588	0.77264	32.43	32.035	32.807	-0.15772					28	18	2	0	0	0	0.027866	1	2292	2292		47.657	0	1	127200			21179	6530	14589	14622	24510	24510					-0.04402023698526136
GREGRPGLD	9	Unmodified	_GREGRPGLD_					0	0	0			REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7720947265625	2	478.749047	955.483542	-0.17646	-8.4482E-05	-4.065	-0.0019461	-4.2415	-0.0020306	478.7470249152467	44.72	0.48892	44.757	44.578	45.067	0.0369					22	13	2	0	0	0	0.024209	1	4225	4225		39.253	1.4413	1	607010	+		21180	19229	14590	14623	24511	24511					0.004019444638174718
GREKHGAS	8	Unmodified	_GREKHGAS_					0	0	0		ENSG00000158816|ENST00000289815|VWA5B1;nc|ENSG00000158816|Q5TIE3|VWA5B1	ENSG00000158816|ENST00000289815|VWA5B1	ENSG00000158816|ENST00000289815|VWA5B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2458190917969	2	421.217383	840.420213	0.27204	0.00011459	0.11915	5.0186E-05	0.39119	0.00016478	421.2173347623231	19.712	0.5163	19.712	19.463	19.979	0					18	10	2	0	0	0	0.027866	1	476	476		13.775	1.5685	1	147960			21181	6705	14591	14624	24512	24512					-0.006379962534310835
GRELIISTL	9	Unmodified	_GRELIISTL_					0	0	0			REV__ENST00000465753.1_1_13:111552967-111558395:-|nuORF	REV__ENST00000465753.1_1_13:111552967-111558395:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7784729003906	2	501.303124	1000.5917	-0.72078	-0.00036133	2.7815	0.0013944	2.0607	0.001033	501.3031133351852	64.508	1.5191	64.246	63.754	65.273	-0.2626					95	40	4	0	0	0	0.023473	1	7508	7508		56.434	0	1	1717100	+		21182	33015	14592	14625	24513	24513					0.09142315994370165
GRELPLVLL	9	Unmodified	_GRELPLVLL_					0	0	0		nc|ENSG00000165623|P07492-2|GRP;nc|ENSG00000165623|P07492-3|GRP;ENSG00000134443|ENST00000256857|GRP	nc|ENSG00000165623|P07492-2|GRP	nc|ENSG00000165623|P07492-2|GRP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3112487792969	2	505.32386	1008.63317	-0.38752	-0.00019582	3.1215	0.0015774	2.734	0.0013816	505.3251822949741	35.279	0.18721	35.323	35.156	35.343	0.04406					5	4	2	0	0	0	0.024539	1	2634	2634		27.882	20.192	1	32124			21183	4795	14593	14626	24514	24514					0.12919496753693238
GREPGISIL	9	Unmodified	_GREPGISIL_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.74322509765625	2	471.274367	940.53418	0.32504	0.00015318	-0.52942	-0.0002495	-0.20438	-9.6319E-05	471.27360930633563	47.191	0.32158	47.191	47.04	47.361	0					12	8	2	0	0	0	0.024397	1	4739	4739		47.657	8.8512	1	256860			21184	5635	14594	14627	24515	24515					0.06153473788822339
GREPKHVSN	9	Unmodified	_GREPKHVSN_					0	0	0			REV__ENSG00000140948|ENST00000671377|ZCCHC14	REV__ENSG00000140948|ENST00000671377|ZCCHC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2692260742188	2	512.270147	1022.52574	-0.23912	-0.0001225	1.8091	0.00092674	1.57	0.00080424	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	0.89532	1	13681	13681		32.751	4.8683	1	6463600	+		21185	24051	14595	14628	24516	24516					0.015379198721802823
GRESEGYEQTE	11	Unmodified	_GRESEGYEQTE_					0	0	0			REV__nc|ENSG00000182310|W5XKT8-2|SPACA6	REV__nc|ENSG00000182310|W5XKT8-2|SPACA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2198181152344	3	428.849473	1283.52659	0.17581	7.5397E-05	1.6132	0.00069181	1.789	0.0007672	429.1850368038653	27.441	0.28901	27.284	27.145	27.434	-0.15664					10	6	2	0	0	0	0.024735	1	1504	1504		21.78	9.5737	1	34597	+		21186	30479	14596	14629	24517	24517					-0.10383375060109756
GRESRVCP	8	Unmodified	_GRESRVCP_					0	0	0		ENST00000518618.2_1_20:61916981-61917215:+|nuORF;ENST00000520022.2_1_20:61915834-61917215:+|nuORF	ENST00000518618.2_1_20:61916981-61917215:+|nuORF	ENST00000518618.2_1_20:61916981-61917215:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.22894287109375	2	452.226894	902.439234	0.55673	0.00025177	2.1279	0.0009623	2.6846	0.0012141	452.2279602715293	102.95	1.6983	102.82	102.36	104.06	-0.12723					80	40	5	0	0	0	1.0338	3	12780	12780;12792;12804		31.955	2.1133	1	2221600			21187	15931	14597	14630	24518;24519;24520	24518					-0.015887829540361054
GRESRVCP	8	Unmodified	_GRESRVCP_					0	0	0		ENST00000518618.2_1_20:61916981-61917215:+|nuORF;ENST00000520022.2_1_20:61915834-61917215:+|nuORF	ENST00000518618.2_1_20:61916981-61917215:+|nuORF	ENST00000518618.2_1_20:61916981-61917215:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2282409667969	2	452.226894	902.439234	0.28257	0.00012779	2.6572	0.0012016	2.9397	0.0013294	452.2281336291809	103.03	1.39	102.86	102.46	103.85	-0.17034					74	33	5	0	0	0	0.97924	1	12798	12798		40.573	7.7602	1	4566600			21188	15931	14597	14630	24521	24521					-0.015887829540361054
GRFAVPLI	8	Unmodified	_GRFAVPLI_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.2737731933594	2	436.771263	871.527973	-0.27544	-0.00012031	-3.51	-0.0015331	-3.7854	-0.0016534	436.76965701109594	60.515	0.53197	60.309	60.011	60.543	-0.20599					14	12	2	0	0	0	0.027866	1	6743	6743		21.702	7.0382	1	64612	+		21189	24502	14598	14631	24522	24522					0.08707000347931171
GRFDSLTYLSH	11	Unmodified	_GRFDSLTYLSH_					0	0	0			REV__ENST00000561122.1_1_15:57178831-57178933:-|nuORF	REV__ENST00000561122.1_1_15:57178831-57178933:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.915283203125	3	432.55081	1294.6306	0.38199	0.00016523	-3.0868	-0.0013352	-2.7048	-0.00117	432.5490187145869	32.683	1.4521	32.746	31.799	33.251	0.062885					50	37	2	0	0	0	0.024757	1	2179	2179		28.577	16.37	1	518210	+		21190	35166	14599	14632	24523	24523					-0.00493003441943074
GRFGVVANN	9	Unmodified	_GRFGVVANN_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2566833496094	2	467.248683	932.482814	-0.45868	-0.00021432	-0.62148	-0.00029039	-1.0802	-0.00050471	467.24828340126606	73.292	1.5671	73.292	72.131	73.698	0					74	39	3	0	0	0	0.024541	1	9002	9002		16.473	0	1	1057100			21191	2291	14600	14633	24524	24524					0.013871498147409511
GRFGVVANN	9	Unmodified	_GRFGVVANN_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	467.248683	932.482814	-0.04634	-2.1652E-05	-0.91996	-0.00042985	-0.9663	-0.0004515	467.2480434055327	73.636	0.93997	73.365	72.637	73.577	-0.27126	0.025457	0.00013645	NaN	10.866	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1008600			21192	2291	14600	14633							0.013871498147409511
GRFGVVANN	9	Unmodified	_GRFGVVANN_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	467.248683	932.482814	0.46854	0.00021893	-1.5994	-0.00074733	-1.1309	-0.00052841	467.24771473035435	73.294	0.90504	73.303	72.693	73.598	0.0096512	-0.036185	-0.00049852	NaN	10.866	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057600			21193	2291	14600	14633							0.013871498147409511
GRFGVVANN	9	Unmodified	_GRFGVVANN_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	467.248683	932.482814	-0.016666	-7.7872E-06	-1.3909	-0.00064988	-1.4075	-0.00065767	467.24788956225825	73.669	0.55296	73.392	73.092	73.645	-0.2769	0.052282	-0.00030361	NaN	10.866	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243750			21194	2291	14600	14633							0.013871498147409511
GRFGVVANN	9	Unmodified	_GRFGVVANN_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1;DIDO1|p.I1199Nfs*176|1|0.25|ENSG00000101191|chr20:62882360-62882361|-/T|frameshift_variant	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	467.248683	932.482814	-0.22055	-0.00010305	-1.4171	-0.00066212	-1.6376	-0.00076517	467.2479760117312	73.611	0.96326	73.346	72.724	73.687	-0.26479	0.0063653	-0.0003281	NaN	10.866	38	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234120			21195	2291	14600	14633							0.013871498147409511
GRFLLHLP	8	Unmodified	_GRFLLHLP_					0	0	0		TIE1|p.Q181H|1|0.28|ENSG00000066056|chr1:43306898-43306898|G/C|missense_variant	TIE1|p.Q181H|1|0.28|ENSG00000066056|chr1:43306898-43306898|G/C|missense_variant	TIE1|p.Q181H|1|0.28|ENSG00000066056|chr1:43306898-43306898|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7926940917969	2	476.789987	951.565421	0.32188	0.00015347	-3.5148	-0.0016758	-3.1929	-0.0015224	476.78824388563584	50.341	0.43151	50.341	50.21	50.642	0					21	12	2	0	0	0	0.027866	1	5253	5253		20.482	12.792	1	1004200			21196	38067	14601	14634	24525	24525					0.08770091613553177
GRFLLHLP	8	Unmodified	_GRFLLHLP_					0	0	0		TIE1|p.Q181H|1|0.28|ENSG00000066056|chr1:43306898-43306898|G/C|missense_variant	TIE1|p.Q181H|1|0.28|ENSG00000066056|chr1:43306898-43306898|G/C|missense_variant	TIE1|p.Q181H|1|0.28|ENSG00000066056|chr1:43306898-43306898|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.789987	951.565421	0.33811	0.00016121	0.26998	0.00012873	0.6081	0.00028993	476.7897556835405	50.647	0.48018	50.467	50.317	50.797	-0.18071	0.070215	0.0035035	NaN	20.482	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113010			21197	38067	14601	14634							0.08770091613553177
GRFVPRRFL	9	Unmodified	_GRFVPRRFL_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;ENST00000529963.1_1_11:46512944-46516121:-|nuORF	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.7621459960938	2	574.345992	1146.67743	-0.62787	-0.00036062	-1.3533	-0.00077726	-1.9812	-0.0011379	574.345225719054	72.572	0.41905	72.374	72.163	72.582	-0.1981					18	9	3	0	0	0	0.024436	1	8490	8490		38.806	17.12	1	103690			21198	3047	14602	14635	24526	24526					0.1099594569054716
GRFYARGKS	9	Unmodified	_GRFYARGKS_					0	0	0		ENST00000368485.7_1_1:154437860-154438040:+|nuORF	ENST00000368485.7_1_1:154437860-154438040:+|nuORF	ENST00000368485.7_1_1:154437860-154438040:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2503051757812	2	521.283057	1040.55156	0.64819	0.00033789	1.2526	0.00065294	1.9007	0.00099083	521.283832454535	72.276	0.37106	72.012	71.799	72.17	-0.26408					13	8	2	0	0	0	0.024457	1	8455	8455		21.96	0	1	102890			21199	12898	14603	14636	24527	24527					0.03290814114461682
GRGERGRAR	9	Unmodified	_GRGERGRAR_					0	0	0			REV__ENST00000376259.6_1_1:12227075-12248914:+|nuORF	REV__ENST00000376259.6_1_1:12227075-12248914:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3038635253906	2	507.78683	1013.55911	-0.55604	-0.00028235	3.647	0.0018519	3.0909	0.0015695	507.7887616461161	26.489	0.40783	26.466	26.203	26.611	-0.023088					13	9	3	0	0	0	0.024319	1	1361	1361		56.721	28.467	1	78071	+		21200	31352	14604	14637	24528	24528					0.052869664347554135
GRGESEITIT	10	Unmodified	_GRGESEITIT_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2735595703125	2	531.774928	1061.5353	0.1954	0.00010391	-1.2417	-0.00066033	-1.0464	-0.00055642	532.275073301685	106.35	0.83064	106.35	106.03	106.86	0					46	31	2	0	0	0	1.1266	1	13652	13652		29.17	2.374	1	135670	+		21201	27091	14605	14638	24529	24529					0.006996433670337865
GRGGPRHGCA	10	Unmodified	_GRGGPRHGCA_					0	0	0		ENST00000524932.5_2_11:10829926-10830025:-|nuORF	ENST00000524932.5_2_11:10829926-10830025:-|nuORF	ENST00000524932.5_2_11:10829926-10830025:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.23614501953125	2	484.235584	966.456616	0.2469	0.00011956	0.84746	0.00041037	1.0944	0.00052993	484.23596927899956	82.838	1.6316	82.657	81.56	83.192	-0.18079					70	37	3	0	0	0	1.0781	1	9989	9989		35.618	0.41757	1	683310			21202	16073	14606	14639	24530	24530					-0.02795442628382716
GRGGRPGLA	9	Unmodified	_GRGGRPGLA_					0	0	0		ENST00000292090.7_1_17:27053155-27053224:-|nuORF	ENST00000292090.7_1_17:27053155-27053224:-|nuORF	ENST00000292090.7_1_17:27053155-27053224:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.7438049316406	2	420.743568	839.472583	-0.36885	-0.00015519	0.33052	0.00013906	-0.038333	-1.6128E-05	420.74375652988215	27.567	1.6254	27.554	27.241	28.867	-0.012983					105	40	4	0	0	0	0.90698	1	1526	1526		31.955	0	1	8988000			21203	11801	14607	14640	24531	24531					0.04642586880163435
GRGHGRVL	8	Unmodified	_GRGHGRVL_					0	0	0		ENST00000311921.8_1_19:32836542-32836680:+|nuORF	ENST00000311921.8_1_19:32836542-32836680:+|nuORF	ENST00000311921.8_1_19:32836542-32836680:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2351379394531	2	426.25156	850.488568	-1.1241	-0.00047913	-2.4712	-0.0010533	-3.5952	-0.0015325	426.2506265602503	28.286	0.21531	28.286	28.191	28.406	0					5	4	2	0	0	0	0.027866	1	1637	1637		14.664	10.348	1	26402			21204	12085	14608	14641	24532	24532					0.0573429311707514
GRGHIPIPE	9	Unmodified	_GRGHIPIPE_					0	0	0			REV__ENSG00000158246|ENST00000289166|TENT5B	REV__ENSG00000158246|ENST00000289166|TENT5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2816467285156	2	488.272158	974.529764	-0.46543	-0.00022726	-1.038	-0.00050683	-1.5034	-0.00073409	488.2715690090966	65.662	0.70318	65.42	65.085	65.789	-0.24144					35	16	3	0	0	0	0.024506	1	7498	7498		30.504	5.0535	1	686570	+		21205	25183	14609	14642	24533	24533					0.041480093658947226
GRGKPFSQLI	10	Unmodified	_GRGKPFSQLI_					0	0	0			REV__ENST00000470306.5_1_1:156128527-156128722:+|nuORF	REV__ENST00000470306.5_1_1:156128527-156128722:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2821655273438	2	551.822015	1101.62948	-0.11861	-6.5453E-05	-2.3068	-0.0012729	-2.4254	-0.0013384	552.3222407080151	61.956	0.15489	61.698	61.628	61.783	-0.25725					5	3	2	0	0	0	0.03519	1	6935	6935		18.262	0	1	75470	+		21206	33154	14610	14643	24534	24534					0.08272826979850834
GRGLRVPN	8	Unmodified	_GRGLRVPN_					0	0	0			REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7591247558594	2	434.759218	867.503883	0.30541	0.00013278	-0.18538	-8.0597E-05	0.12003	5.2183E-05	434.7590631513954	86.846	1.5284	86.801	86.076	87.604	-0.045105					104	35	5	0	0	0	1.043	1	10860	10860		30.504	0	1	5549200	+		21207	30246	14611	14644	24535	24535					0.06483159914273529
GRGLRVPN	8	Unmodified	_GRGLRVPN_					0	0	0			REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	REV__ENST00000314485.11_2_1:160063696-160063849:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7593688964844	2	434.759218	867.503883	0.4777	0.00020768	-0.25664	-0.00011158	0.22106	9.6106E-05	434.75903003403516	86.907	1.794	86.77	86.268	88.062	-0.13734					101	42	4	0	0	0	0.99042	1	10573	10573		38.806	1.647	1	4266100	+		21208	30246	14611	14644	24536	24536					0.06483159914273529
GRGPALAPRA	10	Unmodified	_GRGPALAPRA_					0	0	0			REV__ENST00000407796.6_1_14:105246507-105261997:-|nuORF	REV__ENST00000407796.6_1_14:105246507-105261997:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.27166748046875	2	483.2856	964.556647	-0.41501	-0.00020057	0.57401	0.00027741	0.159	7.6843E-05	483.2858465424933	27.646	0.55831	27.646	27.286	27.844	0					20	14	2	0	0	0	0.03519	1	1485	1485		42.396	0	1	52295	+		21209	30723	14612	14645	24537	24537					0.07295117977071186
GRGPDNAL	8	Unmodified	_GRGPDNAL_					0	0	0		ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10;nc|ENSG00000110906|Q9H3F6-2|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.2073974609375	2	400.206484	798.398415	-0.60297	-0.00024131	1.0656	0.00042647	0.46267	0.00018516	400.2068161490246	27.689	1.1912	27.532	26.844	28.035	-0.15664					70	28	5	0	0	0	0.6248	1	1531	1531		73.975	20.623	1	530710			21210	3074	14613	14646	24538	24538					-0.008848010020187758
GRGPDNAL	8	Unmodified	_GRGPDNAL_					0	0	0		ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10;nc|ENSG00000110906|Q9H3F6-2|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	400.206484	798.398415	0.69608	0.00027858	0.24704	9.8866E-05	0.94312	0.00037744	400.20639138203865	27.863	0.6051	27.863	27.508	28.113	0	0.23948	0.00034676	NaN	73.975	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319110			21211	3074	14613	14646							-0.008848010020187758
GRGPDNAL	8	Unmodified	_GRGPDNAL_					0	0	0		ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10;nc|ENSG00000110906|Q9H3F6-2|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	400.206484	798.398415	1.9847	0.00079428	-1.3417	-0.00053695	0.64299	0.00025733	400.2058350951549	27.383	0.54708	27.465	27.136	27.684	0.081293	-0.15873	-0.00092486	NaN	73.975	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310270			21212	3074	14613	14646							-0.008848010020187758
GRGPDNAL	8	Unmodified	_GRGPDNAL_					0	0	0		ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10;nc|ENSG00000110906|Q9H3F6-2|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	400.206484	798.398415	0.38595	0.00015446	0.23377	9.3556E-05	0.61972	0.00024801	400.20641905633755	27.925	1.0092	27.68	26.992	28.001	-0.24524	0.056376	0.00033614	NaN	73.975	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495380			21213	3074	14613	14646							-0.008848010020187758
GRGPDNAL	8	Unmodified	_GRGPDNAL_					0	0	0		ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10;nc|ENSG00000110906|Q9H3F6-2|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	400.206484	798.398415	0.39462	0.00015793	0.12527	5.0134E-05	0.51989	0.00020806	400.20637278986936	27.745	0.9954	27.577	26.931	27.927	-0.16816	-0.046163	0.0002493	NaN	73.975	49	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591250			21214	3074	14613	14646							-0.008848010020187758
GRGPKRLAPSL	11	Unmodified	_GRGPKRLAPSL_					0	0	0			REV__ENST00000319080.7_12:122627539-122627764:+|nuORF	REV__ENST00000319080.7_12:122627539-122627764:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.3533935546875	2	576.354014	1150.69348	-1.0769	-0.00062066	0.23009	0.00013261	-0.84679	-0.00048805	576.3541284170691	44.824	0.99071	44.675	44.355	45.346	-0.1488					97	28	6	0	0	0	0.40147	1	4293	4293		82.75	24.521	1	5740900	+		21215	30321	14614	14647	24539	24539					0.1241560713679064
GRGPPCQV	8	Unmodified	_GRGPPCQV_					0	0	0		ENST00000306085.10_3_7:100737901-100738075:+|nuORF	ENST00000306085.10_3_7:100737901-100738075:+|nuORF	ENST00000306085.10_3_7:100737901-100738075:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.26873779296875	2	407.20543	812.396307	0.062171	2.5316E-05	-4.4159	-0.0017982	-4.3537	-0.0017729	407.2035527503232	28.676	0.45749	28.676	28.49	28.947	0					19	10	2	0	0	0	0.027866	1	1693	1693		52.299	32.939	1	105290			21216	11999	14615	14648	24540	24540					-0.017395530114640678
GRGQSGAPGL	10	Unmodified	_GRGQSGAPGL_					0	0	0		ENST00000530428.1_1_11:47660592-47664057:-|nuORF	ENST00000530428.1_1_11:47660592-47664057:-|nuORF	ENST00000530428.1_1_11:47660592-47664057:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2391052246094	2	450.238316	898.462078	-0.1957	-8.8112E-05	-0.73362	-0.0003303	-0.92932	-0.00041842	450.2379955320939	23.887	1.6075	23.887	23.566	25.173	0					84	36	4	0	0	0	0.26127	4	1001	977;989;1001;1014		113.41	33.961	1	8290200			21217	16234	14616	14649	24541;24542;24543;24544	24543					0.008785594351024884
GRGQSGAPGL	10	Unmodified	_GRGQSGAPGL_					0	0	0		ENST00000530428.1_1_11:47660592-47664057:-|nuORF	ENST00000530428.1_1_11:47660592-47664057:-|nuORF	ENST00000530428.1_1_11:47660592-47664057:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.24005126953125	2	450.238316	898.462078	-0.66064	-0.00029744	-0.22611	-0.0001018	-0.88674	-0.00039925	450.2382204597854	23.894	1.5802	23.847	23.528	25.108	-0.047146					84	35	4	0	0	0	0.48123	1	998	998		90.37	13.052	1	7469800			21218	16234	14616	14649	24545	24545					0.008785594351024884
GRGRHWTMWY	10	Unmodified	_GRGRHWTMWY_					0	0	0		ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7610168457031	3	450.548858	1348.62474	-0.26696	-0.00012028	-1.8693	-0.00084221	-2.1363	-0.00096249	450.88275570740655	38.833	0.141	38.833	38.761	38.902	0					5	3	2	0	0	0	0.03519	1	3295	3295		22.58	4.0486	1	125950			21219	14588	14617	14650	24546	24546					-0.035623804345732424
GRGRVTTPI	9	Unmodified	_GRGRVTTPI_					0	0	0			REV__ENSG00000092096|ENST00000354772|SLC22A17	REV__ENSG00000092096|ENST00000354772|SLC22A17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7924499511719	2	478.785433	955.556313	-0.65276	-0.00031253	2.4689	0.0011821	1.8161	0.00086952	478.7864250766378	45.999	0.51794	45.796	45.563	46.081	-0.20226					26	13	3	0	0	0	0.024418	1	4368	4368		45.972	10.772	1	646530	+		21220	20925	14618	14651	24547	24547					0.07675698257230579
GRGVLIAVL	9	Unmodified	_GRGVLIAVL_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENST00000490010.1_1_13:103249388-103260038:+|nuORF;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.28466796875	2	449.297645	896.580737	-0.48776	-0.00021915	0.52066	0.00023393	0.032898	1.4781E-05	449.29767918643637	34.967	0.70004	34.78	34.56	35.26	-0.18675					37	17	3	0	0	0	0.024183	1	2572	2572		50.025	0	1	489830			21221	18290	14619	14652	24548	24548					0.12830958410745552
GRGVPNGIP	9	Unmodified	_GRGVPNGIP_					0	0	0		nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.5484924316406	2	433.745776	865.477	-1.0585	-0.00045911	1.498	0.00064973	0.43948	0.00019062	433.7462394636804	24.683	0.71548	24.636	24.308	25.024	-0.047148					24	15	2	0	0	0	0.024457	1	1061	1061		37.159	3.6435	1	98446			21222	776	14620	14653	24549	24549					0.038880513030903785
GRGWGWGSY	9	Unmodified	_GRGWGWGSY_					0	0	0			REV__ENST00000268933.7_1_17:48610272-48613815:+|nuORF	REV__ENST00000268933.7_1_17:48610272-48613815:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7994384765625	2	513.233033	1024.45151	-0.22913	-0.0001176	-0.29878	-0.00015334	-0.52791	-0.00027094	513.2326997224424	19.557	0.43725	19.438	19.249	19.686	-0.11872					13	8	2	0	0	0	0.024405	1	409	409		44.117	16.235	1	31697	+		21223	29783	14621	14654	24550	24550					-0.05973423219336382
GRHENSDLVLQ	11	Unmodified	_GRHENSDLVLQ_					0	0	0		nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.325439453125	2	634.323108	1266.63166	-1.149	-0.00072884	4.4127	0.0027991	3.2637	0.0020703	634.3257469012127	58.773	0.83442	58.585	58.266	59.1	-0.18795					53	20	4	0	0	0	0.40147	2	6465	6465;6475		82.75	9.8712	1	2662000			21224	5577	14622	14655	24551;24552	24551					0.009012109269860957
GRHENSDLVLQ	11	Unmodified	_GRHENSDLVLQ_					0	0	0		nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.3257446289062	2	634.323108	1266.63166	-0.21445	-0.00013603	3.5742	0.0022672	3.3598	0.0021312	634.3252099485666	58.742	0.92558	58.561	58.228	59.153	-0.18133					57	22	4	0	0	0	0.55321	1	6463	6463		72.879	6.45	1	2735000			21225	5577	14622	14655	24553	24553					0.009012109269860957
GRHENSDLVLQ	11	Unmodified	_GRHENSDLVLQ_					0	0	0		nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.3247680664062	2	634.323108	1266.63166	0.36662	0.00023256	2.8342	0.0017978	3.2009	0.0020304	634.3247523963536	58.804	0.67665	58.562	58.3	58.977	-0.24166					51	16	4	0	0	0	0.25893	1	6465	6465		93.143	12.689	1	3017400			21226	5577	14622	14655	24554	24554					0.009012109269860957
GRHENSDLVLQ	11	Unmodified	_GRHENSDLVLQ_					0	0	0		nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	634.323108	1266.63166	0.78077	0.00049526	2.5815	0.0016375	3.3623	0.0021328	634.3246474354773	58.508	0.66742	58.508	58.228	58.895	0	-0.046632	-0.00058272	NaN	93.143	58	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1986500			21227	5577	14622	14655							0.009012109269860957
GRHENSDLVLQ	11	Unmodified	_GRHENSDLVLQ_					0	0	0		nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	634.323108	1266.63166	1.4118	0.00089556	1.9457	0.0012342	3.3575	0.0021298	634.3242088524793	58.793	0.83781	58.606	58.311	59.149	-0.18705	0.051431	-0.0013893	NaN	93.143	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1916800			21228	5577	14622	14655							0.009012109269860957
GRHENSDLVLQ	11	Unmodified	_GRHENSDLVLQ_					0	0	0		nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	634.323108	1266.63166	0.20003	0.00012689	3.1267	0.0019834	3.3268	0.0021102	634.3249852009382	58.413	0.66634	58.504	58.224	58.89	0.091217	-0.0503	0.00010896	NaN	93.143	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2076400			21229	5577	14622	14655							0.009012109269860957
GRHLPSRPC	9	Unmodified	_GRHLPSRPC_					0	0	0			REV__nc|ENSG00000184402|O75177-5|SS18L1	REV__nc|ENSG00000184402|O75177-5|SS18L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7898254394531	2	511.76926	1021.52397	-0.24916	-0.00012751	-4.0382	-0.0020666	-4.2873	-0.0021941	511.76686542250565	41.32	0.68243	41.184	40.908	41.591	-0.13554					37	17	3	0	0	0	0.024511	1	3659	3659		25.574	1.3713	1	290280	+		21230	37010	14623	14656	24555	24555					0.01406587582573593
GRHPGKGV	8	Unmodified	_GRHPGKGV_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.2330017089844	2	404.232836	806.45112	1.5545	0.00062839	-1.9852	-0.00080248	-0.43067	-0.00017409	404.2317363749905	84.372	3.2452	84.398	82.917	86.162	0.026558					196	76	5	0	0	0	1.0574	1	10454	10454		24.203	3.7209	1	13913000			21231	2322	14624	14657	24556	24556					0.040152018514731935
GRHPVWKV	8	Unmodified	_GRHPVWKV_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|16|2|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|16|2|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|16|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2518005371094	2	489.785236	977.555919	-0.30736	-0.00015054	-2.198	-0.0010766	-2.5054	-0.0012271	489.78420197119505	73.545	0.44965	73.274	73.009	73.459	-0.27126					14	11	2	0	0	0	0.027866	1	8962	8962		30.504	4.9296	1	84853			21232	37991	14625	14658	24557	24557					0.06624323328026094
GRHRKGQV	8	Unmodified	_GRHRKGQV_					0	0	0			REV__ENSG00000136040|ENST00000258526|PLXNC1	REV__ENSG00000136040|ENST00000258526|PLXNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.7514953613281	2	469.275567	936.53658	0.33793	0.00015858	-3.1393	-0.0014732	-2.8013	-0.0013146	469.27581421690326	54.263	0.37337	54.116	53.821	54.194	-0.14723					16	10	2	0	0	0	0.027866	1	5895	5895		31.955	0	1	52817	+		21233	23616	14626	14659	24558	24558					0.06577367037129989
GRHVGVSGA	9	Unmodified	_GRHVGVSGA_					0	0	0		ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.2279968261719	2	420.227751	838.440949	-0.56007	-0.00023536	0.77407	0.00032528	0.214	8.9928E-05	420.228084419357	25.706	1.2327	25.706	25.173	26.406	0					55	29	3	0	0	0	0.75397	1	1251	1251		42.396	3.59	1	1112900			21234	16140	14627	14660	24559	24559					0.015265941262327942
GRHVGVSGA	9	Unmodified	_GRHVGVSGA_					0	0	0		ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.2278747558594	2	420.227751	838.440949	-0.58871	-0.00024739	0.92077	0.00038693	0.33206	0.00013954	420.22809474166144	25.726	0.72095	25.692	25.392	26.113	-0.034397					43	16	4	0	0	0	0.83071	1	1241	1241		37.159	0	1	1150000			21235	16140	14627	14660	24560	24560					0.015265941262327942
GRHVGVSGA	9	Unmodified	_GRHVGVSGA_					0	0	0		ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	420.227751	838.440949	0.39277	0.00016505	-2.0811	-0.00087454	-1.6883	-0.00070949	420.2268190173431	25.563	0.95549	25.643	25.134	26.09	0.08009	-0.014239	-0.0022865	NaN	37.159	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	979960			21236	16140	14627	14660							0.015265941262327942
GRHVGVSGA	9	Unmodified	_GRHVGVSGA_					0	0	0		ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	420.227751	838.440949	-0.40782	-0.00017138	-3.8497	-0.0016178	-4.2576	-0.0017891	420.225765015334	25.76	0.1307	25.589	25.492	25.623	-0.17151	-0.068492	-0.003773	NaN	37.159	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13636			21237	16140	14627	14660							0.015265941262327942
GRIGTAPVCSS	11	Unmodified	_GRIGTAPVCSS_					0	0	0		ENST00000533300.1_1_8:70746402-70762383:+|nuORF	ENST00000533300.1_1_8:70746402-70762383:+|nuORF	ENST00000533300.1_1_8:70746402-70762383:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3238525390625	2	524.266216	1046.51788	0.073023	3.8284E-05	-3.9437	-0.0020676	-3.8707	-0.0020293	524.2643083181283	50.204	0.23107	49.924	49.839	50.07	-0.27977					8	5	2	0	0	0	0.024741	1	5092	5092		23.523	0	1	170200			21238	16314	14628	14661	24561	24561					-0.0035197543959384348
GRIHKGDRVL	10	Unmodified	_GRIHKGDRVL_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;ENST00000511105.1_1_4:87684292-87687745:+|nuORF	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8433837890625	2	575.843813	1149.67307	-1.2575	-0.00072414	-0.21498	-0.00012379	-1.4725	-0.00084794	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0508	1	11302	11302		39.253	8.9351	1	6251500			21239	7118	14629	14662	24562	24562					0.10422436476983421
GRIIAKLYCP	10	Unmodified	_GRIIAKLYCP_					0	0	0			REV__ENST00000427137.1_1_7:46039864-46040332:-|nuORF	REV__ENST00000427137.1_1_7:46039864-46040332:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3302001953125	2	567.328619	1132.64269	-0.39327	-0.00022312	2.2588	0.0012815	1.8655	0.0010583	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0781	1	11021	11021		35.618	2.8059	1	19210000	+		21240	32284	14630	14663	24563	24563					0.08166941767581193
GRIKGYNTN	9	Unmodified	_GRIKGYNTN_					0	0	0			REV__NLGN4X|p.W127Cfs*9|1|0.21|ENSG00000146938|chrX:6151086-6151086|C/-|frameshift_variant;REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8440856933594	2	511.772522	1021.53049	-0.48802	-0.00024976	3.5884	0.0018365	3.1004	0.0015867	511.773920390294	76.56	0.76849	76.332	76.003	76.772	-0.22843					35	18	3	0	0	0	0.024397	1	9387	9387		39.253	5.0803	1	862160	+		21241	24522;37285	14631	14664	24564	24564					0.020588040149391418
GRINKPYI	8	Unmodified	_GRINKPYI_					0	0	0			REV__nc|ENSG00000169519|A6NJ78-4|METTL15	REV__nc|ENSG00000169519|A6NJ78-4|METTL15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.8008117675781	2	480.784902	959.55525	0.24982	0.00012011	-2.3913	-0.0011497	-2.1414	-0.0010296	480.7835425543429	94.249	0.58104	94.127	93.929	94.511	-0.12215					24	13	3	0	0	0	0.027866	1	11631	11631		50.025	9.4519	1	131620	+		21242	36914	14632	14665	24565	24565					0.07385483888310773
GRIPMMKKV	9	Unmodified	_GRIPMMKKV_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2977905273438	2	530.311915	1058.60928	-0.42929	-0.00022766	3.1146	0.0016517	2.6853	0.0014241	530.3135961013542	65.822	0.90286	65.549	65.161	66.064	-0.27282					34	24	2	0	0	0	0.024436	1	7793	7793		16.473	0	1	1994400			21243	13153;10050	14633	14666	24566	24566					0.08231616724015112
GRIPTRVN	8	Unmodified	_GRIPTRVN_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.77215576171875	2	456.772326	911.530098	-0.48279	-0.00022053	0.27966	0.00012774	-0.20313	-9.2785E-05	456.77238741278404	89.196	1.871	89.033	88.554	90.425	-0.1626					101	44	4	0	0	0	1.0198	1	10905	10905		34.173	2.2177	1	5190000	+		21244	21729	14634	14667	24567	24567					0.07079429085740685
GRIPTRVN	8	Unmodified	_GRIPTRVN_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.772216796875	2	456.772326	911.530098	-0.2547	-0.00011634	-0.65491	-0.00029914	-0.90961	-0.00041548	456.7722485298994	89.203	2.0073	89.075	88.281	90.288	-0.12774					107	47	4	0	0	0	1.0198	1	10913	10913		34.173	2.2177	1	3333900	+		21245	21729	14634	14667	24568	24568					0.07079429085740685
GRIPTRVN	8	Unmodified	_GRIPTRVN_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.772216796875	2	456.772326	911.530098	0.23368	0.00010674	-0.52507	-0.00023984	-0.29139	-0.0001331	456.77201428085914	89.216	1.5163	89.079	88.482	89.998	-0.13761					87	35	5	0	0	0	1.0198	1	10904	10904		34.173	4.331	1	3359400	+		21246	21729	14634	14667	24569	24569					0.07079429085740685
GRIRHRQV	8	Unmodified	_GRIRHRQV_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.789794921875	2	511.309941	1020.60533	0.66739	0.00034124	0.27035	0.00013823	0.93773	0.00047947	511.3099254805711	85.647	0.25243	85.647	85.414	85.667	0					7	5	2	0	0	0	0.027866	1	10736	10736		26.796	2.5934	1	109110	+		21247	24071	14635	14668	24570	24570					0.09585031336848715
GRISPRERRR	10	Unmodified	_GRISPRERRR_					0	0	0		ENST00000374580.8_1_2:203242075-203242198:+|nuORF	ENST00000374580.8_1_2:203242075-203242198:+|nuORF	ENST00000374580.8_1_2:203242075-203242198:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.882080078125	2	641.881793	1281.74903	-0.70618	-0.00045328	1.6287	0.0010454	0.9225	0.00059214	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.1286	1	11906	11906		25.574	1.0549	1	3453200			21248	13121	14636	14669	24571	24571					0.11942833377111128
GRIWSKVML	9	Unmodified	_GRIWSKVML_					0	0	0		ENST00000471223.1_1_1:3553438-3555449:-|nuORF	ENST00000471223.1_1_1:3553438-3555449:-|nuORF	ENST00000471223.1_1_1:3553438-3555449:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	545.315512	1088.61647	-0.35129	-0.00019156	2.4409	0.0013311	2.0896	0.0011395	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.89441	1	10539	10539		32.812	1.2826	1	4936700			21249	14953	14637	14670	24572	24572					0.07570672596102668
GRIYRAAR	8	Unmodified	_GRIYRAAR_					0	0	0		ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2457580566406	2	481.785767	961.556982	-0.33791	-0.0001628	2.954	0.0014232	2.6161	0.0012604	481.78697871586814	60.569	0.7954	60.316	59.94	60.736	-0.25373					44	19	4	0	0	0	0.027866	1	6792	6792		33.516	5.2613	1	697040			21250	8903	14638	14671	24573	24573					0.07466537696927844
GRKELLKGNG	10	Unmodified	_GRKELLKGNG_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3;ENST00000574662.1_2_16:68395424-68404839:-|nuORF;ENST00000563396.1_1_16:68395424-68397457:-|nuORF	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7615356445312	2	536.317097	1070.61964	-0.3783	-0.00020289	-2.4208	-0.0012983	-2.799	-0.0015012	536.315475219389	77.936	0.41913	77.674	77.485	77.904	-0.26202					16	9	2	0	0	0	0.03519	1	9275	9275		19.997	0	1	147470			21251	2462	14639	14672	24574	24574					0.08715638974490503
GRKEVDMEL	9	Unmodified	_GRKEVDMEL_					0	0	0			REV__ENSG00000180370|ENST00000327134|PAK2	REV__ENSG00000180370|ENST00000327134|PAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2967529296875	2	538.773874	1075.53319	-0.4445	-0.00023948	-1.5863	-0.00085464	-2.0308	-0.0010941	538.7730629532159	60.19	0.30005	60.19	60.066	60.366	0					10	7	2	0	0	0	0.02435	1	6925	6925		42.396	0	1	72075	+		21252	27337	14640	14673	24575	24575					-0.0015510864241150557
GRKFYAKV	8	Unmodified	_GRKFYAKV_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.26947021484375	2	484.787444	967.560336	-0.37214	-0.00018041	-3.8311	-0.0018573	-4.2032	-0.0020377	484.78546775261856	27.07	0.58649	27.07	26.7	27.286	0					30	14	3	0	0	0	0.027866	1	1467	1467		35.201	16.876	1	284280	+		21253	21868	14641	14674	24576	24576					0.07525787750932977
GRKFYAKV	8	Unmodified	_GRKFYAKV_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2696228027344	2	484.787444	967.560336	-1.2512	-0.00060658	-2.123	-0.0010292	-3.3742	-0.0016358	484.7862879911918	26.87	0.55758	26.951	26.543	27.1	0.081291					33	13	4	0	0	0	0.027866	1	1386	1386		35.201	13.498	1	334570	+		21254	21868	14641	14674	24577	24577					0.07525787750932977
GRKFYAKV	8	Unmodified	_GRKFYAKV_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.787444	967.560336	-0.50771	-0.00024613	-3.7099	-0.0017985	-4.2176	-0.0020446	484.78555474842676	27.027	0.62004	27.014	26.621	27.241	-0.012983	0.0024	-0.00015488	NaN	19.36	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351940	+		21255	21868	14641	14674							0.07525787750932977
GRKGAAGRRKR	11	Unmodified	_GRKGAAGRRKR_					0	0	0		ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.923095703125	3	404.921794	1211.74355	0.50475	0.00020438	1.4064	0.00056947	1.9111	0.00077385	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.017	1	1371	1371		33.039	4.4627	1	35253000			21256	4098	14642	14675	24578	24578					0.14615154585294476
GRKGFDIAL	9	Unmodified	_GRKGFDIAL_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7821350097656	2	488.782359	975.550165	0.38975	0.0001905	-0.99287	-0.0004853	-0.60312	-0.0002948	488.78179146163836	40.475	1.8011	40.363	39.64	41.441	-0.11222					128	49	4	0	0	0	0.50848	1	3530	3530		58.782	0.97068	1	9956000			21257	7759	14643	14676	24579	24579					0.061411800256905735
GRKIYRSN	8	Unmodified	_GRKIYRSN_					0	0	0		nc|ENSG00000167554|Q8N9Z0-2|ZNF610;ENSG00000167554|ENST00000403906|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7178955078125	2	497.283057	992.551562	-0.54461	-0.00027083	-3.1793	-0.001581	-3.7239	-0.0018518	497.2814724333177	27.684	0.18643	27.766	27.646	27.833	0.081291					6	4	2	0	0	0	0.027866	1	1488	1488		21.96	0	1	37769			21258	7701	14644	14677	24580	24580					0.05498814114469042
GRKMLDFVL	9	Unmodified	_GRKMLDFVL_					0	0	0			REV__ENSG00000164776|ENST00000297373|PHKG1	REV__ENSG00000164776|ENST00000297373|PHKG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2962036132812	2	539.807519	1077.60049	-1.4206	-0.00076683	-2.4127	-0.0013024	-3.8332	-0.0020692	540.3070604545265	60.575	0.28919	60.575	60.33	60.619	0					9	7	2	0	0	0	0.024457	1	6952	6952		29.15	0	1	875140	+		21259	25801	14645	14678	24581	24581					0.064789663592137
GRKMLDFVL	9	Unmodified	_GRKMLDFVL_					0	0	0			REV__ENSG00000164776|ENST00000297373|PHKG1	REV__ENSG00000164776|ENST00000297373|PHKG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2967529296875	2	539.807519	1077.60049	-2.4223	-0.0013076	0.40582	0.00021906	-2.0165	-0.0010885	540.3084792088071	60.491	0.36719	60.57	60.28	60.647	0.078888					11	9	2	0	0	0	0.024405	1	6856	6856		27.882	3.6795	1	243720	+		21260	25801	14645	14678	24582	24582					0.064789663592137
GRLAREAP	8	Unmodified	_GRLAREAP_					0	0	0			REV__ENSG00000177706|ENST00000313766|FAM20C	REV__ENSG00000177706|ENST00000313766|FAM20C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.25201416015625	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.0198	1	9659	9659		34.173	1.3601	1	1708300	+		21261	27141	14646	14679	24583	24583					0.048394536773685104
GRLATGDSA	9	Unmodified	_GRLATGDSA_					0	0	0		ENST00000248306.7_1_12:82752355-82780588:+|nuORF;ENST00000547985.1_1_12:82752355-82752616:+|nuORF	ENST00000248306.7_1_12:82752355-82780588:+|nuORF	ENST00000248306.7_1_12:82752355-82780588:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.21942138671875	2	424.217049	846.419545	0.67544	0.00028653	0.19374	8.2189E-05	0.86918	0.00036872	424.21820833570257	95.176	5.4327	95.054	90.795	96.228	-0.12251					196	127	3	0	0	0	0.96322	1	11742	11742		27.882	1.1893	1	388040			21262	11333	14647	14680	24584	24584					-0.009808356931443996
GRLDTATN	8	Unmodified	_GRLDTATN_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.21832275390625	2	424.217049	846.419545	-0.039211	-1.6634E-05	3.6907	0.0015657	3.6515	0.001549	424.2185373562743	94.954	1.5536	94.817	94.213	95.766	-0.13779					61	35	2	0	0	0	1.0198	1	11692	11692		34.173	3.6689	1	355630			21263	4071	14648	14681	24585	24585					-0.009808356931557682
GRLDTATN	8	Unmodified	_GRLDTATN_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2196044921875	2	424.217049	846.419545	0.67544	0.00028653	0.19374	8.2189E-05	0.86918	0.00036872	424.21820833570257	95.176	5.4327	95.054	90.795	96.228	-0.12251					196	127	3	0	0	0	0.94517	1	11725	11725		45.952	8.7928	1	388040			21264	4071	14648	14681	24586	24586					-0.009808356931557682
GRLEKRNS	8	Unmodified	_GRLEKRNS_					0	0	0		ENST00000558735.1_1_15:44581347-44620963:+|nuORF;ENST00000429162.2_1_15:44581227-44599615:+|nuORF;nc|ENSG00000166734|Q6P4E1-3|GOLM2;nc|ENSG00000166734|Q6P4E1-2|GOLM2;nc|ENSG00000166734|Q6P4E1-5|GOLM2;ENSG00000166734|ENST00000299957|GOLM2	ENST00000558735.1_1_15:44581347-44620963:+|nuORF	ENST00000558735.1_1_15:44581347-44620963:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2845153808594	2	480.27269	958.530826	0.26484	0.00012719	2.3669	0.0011368	2.6318	0.001264	480.2743132229487	75.762	1.2762	75.774	75.54	76.816	0.011635					105	32	5	0	0	0	0.027866	1	9307	9307		26.693	3.6504	1	14389000			21265	7597	14649	14682	24587	24587					0.049902237348078415
GRLERARDV	9	Unmodified	_GRLERARDV_					0	0	0			REV__nc|ENSG00000187609|Q8N9H8-3|EXD3	REV__nc|ENSG00000187609|Q8N9H8-3|EXD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7850341796875	2	536.304521	1070.59449	-0.76245	-0.0004089	3.8011	0.0020386	3.0387	0.0016296	536.3065740327977	53.276	1.05	53.129	52.406	53.456	-0.14723					58	27	3	0	0	0	0.024427	1	5686	5686		34.173	3.6689	1	281520	+		21266	27948	14650	14683	24588	24588					0.062015841718903175
GRLFRTKV	8	Unmodified	_GRLFRTKV_					0	0	0		ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7825622558594	2	488.806168	975.597784	-0.17143	-8.3796E-05	-0.82564	-0.00040358	-0.99707	-0.00048738	488.8056367079323	36.801	0.97575	36.737	36.115	37.091	-0.063389					45	25	3	0	0	0	0.027866	1	2909	2909		7.1934	0	1	376270			21267	2242	14651	14684	24589	24589					0.10900879016560339
GRLGAHAVE	9	Unmodified	_GRLGAHAVE_					0	0	0			REV__ENST00000597646.5_1_19:19021902-19030157:-|nuORF	REV__ENST00000597646.5_1_19:19021902-19030157:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.3023376464844	2	455.248683	908.482814	0.33585	0.00015289	-0.62853	-0.00028614	-0.29268	-0.00013324	455.2485904682921	59.408	1.5145	59.493	58.884	60.399	0.085686					52	40	2	0	0	0	0.024381	1	6849	6849		21.96	0	1	1294900	+		21268	35809	14652	14685	24590	24590					0.024911498147503153
GRLGAHAVEV	10	Unmodified	_GRLGAHAVEV_					0	0	0			REV__ENST00000597646.5_1_19:19021902-19030157:-|nuORF	REV__ENST00000597646.5_1_19:19021902-19030157:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.8002014160156	2	504.78289	1007.55123	0.037177	1.8766E-05	4.358	0.0021998	4.3951	0.0022186	504.7848084616472	58.079	0.99948	58.079	57.68	58.679	0					59	26	3	0	0	0	0.03519	1	6563	6563		49.442	0	1	755890	+		21269	35809	14653	14686	24591	24591					0.047753943946077015
GRLHKTSA	8	Unmodified	_GRLHKTSA_					0	0	0			REV__ENSG00000180432|ENST00000316161|CYP8B1	REV__ENSG00000180432|ENST00000316161|CYP8B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2514953613281	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	0.95679	1	9560	9560		44.117	3.5442	1	2257900	+		21270	27341	14654	14687	24592	24592					0.04839453677379879
GRLHKTSA	8	Unmodified	_GRLHKTSA_					0	0	0			REV__ENSG00000180432|ENST00000316161|CYP8B1	REV__ENSG00000180432|ENST00000316161|CYP8B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2514953613281	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0574	1	9546	9546		27.882	2.4321	1	1872200	+		21271	27341	14654	14687	24593	24593					0.04839453677379879
GRLIERSI	8	Unmodified	_GRLIERSI_					0	0	0			REV__nc|ENSG00000071054|O95819-4|MAP4K4	REV__nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7740783691406	2	472.287808	942.561064	-0.56349	-0.00026613	0.63325	0.00029908	0.069761	3.2947E-05	472.28795992816265	22.357	0.71182	22.431	22.172	22.884	0.073954					30	14	3	0	0	0	0.027866	1	787	787		44.117	34.411	1	159420	+		21272	19489	14655	14688	24594	24594					0.08748582399982752
GRLIESPFE	9	Unmodified	_GRLIESPFE_					0	0	0		PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3232421875	2	524.277106	1046.53966	0.43355	0.0002273	-1.349	-0.00070726	-0.91548	-0.00047996	524.2762837088515	50.009	0.92787	49.829	49.57	50.498	-0.18071					56	24	3	0	0	0	0.024523	1	5075	5075		29.15	0	1	371130			21273	2813	14656	14689	24595	24595					0.01825152580613576
GRLIKKRTSIN	11	Unmodified	_GRLIKKRTSIN_					0	0	0			REV__ENST00000521420.5_1_5:156820887-156821010:+|nuORF	REV__ENST00000521420.5_1_5:156820887-156821010:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	643.4006958007812	2	643.406778	1284.799	0.9058	0.0005828	-1.0283	-0.00066159	-0.12246	-7.8789E-05	643.4061591945805	104.35	0.53953	104.35	104.03	104.57	0					35	12	4	0	0	0	1.0292	1	13390	13390		30.318	3.6248	1	496070	+		21274	34315	14657	14690	24596	24596					0.16799523262420735
GRLIRWITY	9	Unmodified	_GRLIRWITY_					0	0	0			REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3428344726562	2	589.345658	1176.67676	-1.6034	-0.00094497	-3.1551	-0.0018594	-4.7585	-0.0028044	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	0.91321	2	11210	11199;11210		31.53	3.4483	1	5827400	+		21275	32118	14658	14691	24597;24598	24598					0.09549106250847217
GRLKGPNLL	9	Unmodified	_GRLKGPNLL_					0	0	0		ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.3062744140625	2	484.306001	966.597449	2.9765	0.0014416	-3.2001	-0.0015498	-0.22355	-0.00010827	484.3043125643472	18.692	0.39858	18.449	18.224	18.623	-0.24256					11	7	2	0	0	0	0.97516	1	319	319		25.45	6.0902	1	81714			21276	13904	14659	14692	24599	24599					0.11281459296708363
GRLKGPNLL	9	Unmodified	_GRLKGPNLL_					0	0	0		ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.306001	966.597449	3.725	0.001804	-4.3827	-0.0021226	-0.65771	-0.00031853	484.3040013719668	18.454	0.29563	18.517	18.353	18.649	0.063309	0.013328	-0.0024859	NaN	25.45	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15210			21277	13904	14659	14692							0.11281459296708363
GRLKGPNLL	9	Unmodified	_GRLKGPNLL_					0	0	0		ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.306001	966.597449	0.83296	0.00040341	-1.0921	-0.00052891	-0.25914	-0.0001255	484.3054618577605	18.67	0.44588	18.514	18.197	18.643	-0.15637	0.010206	0.00070145	NaN	25.45	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82885			21278	13904	14659	14692							0.11281459296708363
GRLKGPNLL	9	Unmodified	_GRLKGPNLL_					0	0	0		ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.306001	966.597449	0.30393	0.00014719	-0.47361	-0.00022937	-0.16968	-8.2179E-05	484.3056323924969	18.738	0.44554	18.535	18.262	18.708	-0.20371	0.030999	0.0013005	NaN	25.45	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76256			21279	13904	14659	14692							0.11281459296708363
GRLKPGQN	8	Unmodified	_GRLKPGQN_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.25146484375	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.0009	1	9833	9833		37.159	6.6555	1	1708300	+		21280	25221	14660	14693	24600	24600					0.04839453677379879
GRLKPGQN	8	Unmodified	_GRLKPGQN_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.25115966796875	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	0.97924	1	9829	9829		40.573	3.4135	1	1610700	+		21281	25221	14660	14693	24601	24601					0.04839453677379879
GRLKPGQN	8	Unmodified	_GRLKPGQN_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2518005371094	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	0.97924	2	9633	9526;9633		40.573	8.6178	1	2257900	+		21282	25221	14660	14693	24602;24603	24603					0.04839453677379879
GRLKPGQN	8	Unmodified	_GRLKPGQN_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25140380859375	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0574	1	9499	9499		24.203	2.2429	1	1872200	+		21283	25221	14660	14693	24604	24604					0.04839453677379879
GRLKRNLSA	9	Unmodified	_GRLKRNLSA_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.32672119140625	2	507.811982	1013.60941	0.12523	6.3593E-05	-0.097611	-4.9568E-05	0.027619	1.4025E-05	507.8118448506053	19.824	0.34368	19.663	19.48	19.823	-0.16079					16	6	3	0	0	0	0.024495	1	486	486		26.693	0	1	181190			21284	1719	14661	14694	24605	24605					0.10315076039887572
GRLKRVLL	8	Unmodified	_GRLKRVLL_					0	0	0			REV__nc|ENSG00000144908|O75891-2|ALDH1L1	REV__nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.8337097167969	2	477.832186	953.649819	0.39262	0.00018761	2.883	0.0013776	3.2756	0.0015652	477.8334281447745	105.79	1.1708	105.79	105.37	106.54	-0.0013199					118	39	4	0	0	0	1.043	1	13531	13531		30.504	2.2494	1	1956600	+		21285	24373	14662	14695	24606	24606					0.17114042430318932
GRLLLLKIL	9	Unmodified	_GRLLLLKIL_					0	0	0			REV__ENSG00000138071|ENST00000260641|ACTR2	REV__ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8211059570312	2	519.87352	1037.73249	0.0011778	6.1229E-07	-1.651	-0.0008583	-1.6498	-0.00085768	519.8724058227715	80.738	0.32279	80.592	80.532	80.855	-0.146					9	7	2	0	0	0	0.024541	1	9708	9708		18.324	6.1176	1	18956	+		21286	23812	14663	14696	24607	24607					0.2151293943845758
GRLLLRDS	8	Unmodified	_GRLLLRDS_					0	0	0			REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.2804870605469	2	465.279983	928.545414	-0.049393	-2.2982E-05	0.34699	0.00016145	0.2976	0.00013847	465.27991717882145	87.975	1.3184	87.838	87.459	88.777	-0.13744					91	31	5	0	0	0	1.0009	1	10689	10689		37.159	0	1	1523900	+		21287	29779	14664	14697	24608	24608					0.07828295882939074
GRLLRSFVW	9	Unmodified	_GRLLRSFVW_					0	0	0			REV__ENST00000280969.9_1_5:162930139-162930262:+|nuORF	REV__ENST00000280969.9_1_5:162930139-162930262:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3297119140625	2	567.33255	1132.65055	0.30028	0.00017036	-4.1845	-0.002374	-3.8843	-0.0022037	567.3299930544371	88.156	1.3452	88.025	87.056	88.401	-0.13135					87	32	4	0	0	0	0.98128	1	10751	10751		24.203	0	1	1707200	+		21288	29880	14665	14698	24609	24609					0.08952837079368692
GRLLVGCCSN	10	Unmodified	_GRLLVGCCSN_					0	0	0		ENST00000556977.5_1_14:76127576-76127645:+|nuORF	ENST00000556977.5_1_14:76127576-76127645:+|nuORF	ENST00000556977.5_1_14:76127576-76127645:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7894592285156	2	511.249511	1020.48447	0.58351	0.00029832	-4.1212	-0.0021069	-3.5376	-0.0018086	511.7481288715243	85.726	0.67637	85.576	85.114	85.79	-0.14967					18	15	2	0	0	0	0.03519	1	10383	10383		51.335	10.763	1	48117			21289	16723	14666	14699	24610	24610					-0.024953004831559156
GRLPCKRPVR	10	Carbamidomethyl (C)	_GRLPC(Carbamidomethyl (C))KRPVR_	GRLPC(1)KRPVR		GRLPC(42)KRPVR		0	1	0			REV__ENST00000416263.3_1_17:48944138-48944246:+|nuORF	REV__ENST00000416263.3_1_17:48944138-48944246:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8696899414062	2	619.866766	1237.71898	-0.20812	-0.00012901	4.3206	0.0026782	4.1125	0.0025492	619.869248531336	92.303	2.2444	92.294	91.12	93.364	-0.0082855					173	53	4	0	0	0	1.0271	1	11705	11705		42.396	7.2441	1	1362300	+		21290	32075	14667	14700	24611	24611	423				0.10962758387563554
GRLPWVFPAP	10	Unmodified	_GRLPWVFPAP_					0	0	0		ENST00000286091.8_1_7:148725587-148725671:-|nuORF	ENST00000286091.8_1_7:148725587-148725671:-|nuORF	ENST00000286091.8_1_7:148725587-148725671:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2738647460938	2	570.321651	1138.62875	-0.070195	-4.0034E-05	-3.0924	-0.0017637	-3.1626	-0.0018037	570.3197194290021	56.585	0.47145	56.418	56.204	56.676	-0.1672					20	11	2	0	0	0	0.03519	1	6166	6166		27.882	0	1	574170			21291	11756	14668	14701	24612	24612					0.06498032330796377
GRLQAHGL	8	Unmodified	_GRLQAHGL_					0	0	0		ENST00000454786.5_1_2:238944555-238950034:+|nuORF;nc|ENSG00000184182|Q969M7-2|UBE2F	ENST00000454786.5_1_2:238944555-238950034:+|nuORF	ENST00000454786.5_1_2:238944555-238950034:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2462463378906	2	426.245944	850.477334	0.074352	3.1692E-05	0.23102	9.8472E-05	0.30537	0.00013016	426.24594874726847	86.792	1.9596	86.792	86.085	88.044	0					116	46	5	0	0	0	1.0574	1	10950	10950		25.45	4.9683	1	11239000			21292	14567	14669	14702	24613	24613					0.046114710229517186
GRLRKKFSN	9	Unmodified	_GRLRKKFSN_					0	0	0			REV__nc|ENSG00000125571|Q9NZH6-2|IL37	REV__nc|ENSG00000125571|Q9NZH6-2|IL37	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.3323974609375	2	553.333082	1104.65161	0.24251	0.00013419	-1.3773	-0.0007621	-1.1348	-0.00062791	553.3321684369349	95.389	1.2262	95.393	95.009	96.235	0.0041199					91	28	4	0	0	0	0.77768	1	12059	12059		40.778	1.5253	1	4195000	+		21293	36634	14670	14703	24614	24614					0.10347051448297861
GRLRRPVVEI	10	Unmodified	_GRLRRPVVEI_					0	0	0			REV__ENST00000446986.1_1_X:118601448-118602151:-|nuORF	REV__ENST00000446986.1_1_X:118601448-118602151:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8565063476562	2	597.875114	1193.73567	-2.0521	-0.0012269	0.13892	8.3054E-05	-1.9132	-0.0011439	597.8755274322568	92.777	0.21259	92.634	92.57	92.782	-0.14356					7	4	3	0	0	0	0.03519	1	11402	11402		44.377	6.5657	1	66999	+		21294	32639	14671	14704	24615	24615					0.14655582545174184
GRLRTAGF	8	Unmodified	_GRLRTAGF_					0	0	0		ENST00000603928.2_2_9:136891784-136891907:+|nuORF	ENST00000603928.2_2_9:136891784-136891907:+|nuORF	ENST00000603928.2_2_9:136891784-136891907:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.2522888183594	2	439.253769	876.492984	-0.6487	-0.00028495	-2.1512	-0.00094494	-2.8	-0.0012299	439.25274302714246	90.189	0.95551	90.064	89.589	90.544	-0.12512					58	22	4	0	0	0	1.043	1	11044	11044		30.504	8.5438	1	1623900			21295	17550	14672	14705	24616	24616					0.04979757540002083
GRLRVPTGEGA	11	Unmodified	_GRLRVPTGEGA_					0	0	0		ENSG00000140459|ENST00000268053|CYP11A1	ENSG00000140459|ENST00000268053|CYP11A1	ENSG00000140459|ENST00000268053|CYP11A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3162841796875	2	556.812179	1111.60981	-0.18519	-0.00010312	4.3844	0.0024413	4.1992	0.0023381	557.3167727157486	21.499	1.1117	21.57	21.106	22.218	0.071487					71	22	5	0	0	0	1.0075	1	626	626		35.152	5.982	1	552860			21296	5413	14673	14706	24617	24617					0.05846450969079342
GRLSFNDDV	9	Unmodified	_GRLSFNDDV_					0	0	0			REV__ENST00000559190.5_1_15:50545740-50555509:-|nuORF	REV__ENST00000559190.5_1_15:50545740-50555509:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.8446960449219	2	511.748713	1021.48287	-0.31404	-0.00016071	-4.4044	-0.002254	-4.7185	-0.0024147	512.2494719930077	75.796	0.35202	75.538	75.358	75.71	-0.25866					11	8	2	0	0	0	0.024466	1	9005	9005		39.253	24.388	1	30426	+		21297	23999	14674	14707	24618	24618					-0.02700894975907886
GRLSFNDDV	9	Unmodified	_GRLSFNDDV_					0	0	0			REV__ENST00000559190.5_1_15:50545740-50555509:-|nuORF	REV__ENST00000559190.5_1_15:50545740-50555509:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.748713	1021.48287	-1.2439	-0.00063658	-5.7672	-0.0029514	-7.0112	-0.003588	512.2474431868179	75.5	0.46312	75.5	75.269	75.732	0	-0.0038881	7.199E-05	NaN	39.253	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216300	+		21298	23999	14674	14707							-0.02700894975907886
GRLSRLTP	8	Unmodified	_GRLSRLTP_					0	0	0		ENST00000285383.6_1_7:6895426-6899450:-|nuORF	ENST00000285383.6_1_7:6895426-6899450:-|nuORF	ENST00000285383.6_1_7:6895426-6899450:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2743835449219	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	1.0009	1	11430	11430		37.159	1.5408	1	55183000			21299	11749	14675	14708	24619	24619					0.08152313228504227
GRLSRVEPP	9	Unmodified	_GRLSRVEPP_					0	0	0		ENST00000480291.1_7:100609366-100609411:+|nuORF	ENST00000480291.1_7:100609366-100609411:+|nuORF	ENST00000480291.1_7:100609366-100609411:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.26605224609375	2	505.790715	1009.56688	-1.0225	-0.00051715	4.2462	0.0021477	3.2238	0.0016306	505.7927002542142	62.606	0.44941	62.606	62.489	62.938	0					17	10	2	0	0	0	0.024457	1	7303	7303		21.96	0	1	159910			21300	15191	14676	14709	24620	24620					0.062476809116560617
GRLTALLGSTT	11	Unmodified	_GRLTALLGSTT_					0	0	0		ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.31689453125	2	545.316763	1088.61897	-0.6354	-0.0003465	0.4679	0.00025515	-0.1675	-9.1343E-05	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0183	1	11294	11294		32.751	2.4328	1	11705000			21301	12786	14677	14710	24621	24621					0.07820799534783873
GRLTALLGSTT	11	Unmodified	_GRLTALLGSTT_					0	0	0		ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	545.316763	1088.61897	-0.95669	-0.0005217	0.92924	0.00050673	-0.027442	-1.4965E-05	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0392	1	10957	10957		28.081	2.5074	1	15621000			21302	12786	14677	14710	24622	24622					0.07820799534783873
GRLTALLGSTT	11	Unmodified	_GRLTALLGSTT_					0	0	0		ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3162841796875	2	545.316763	1088.61897	-0.379	-0.00020667	-0.20793	-0.00011339	-0.58693	-0.00032006	545.3165662277337	92.124	1.3857	92.001	91.674	93.059	-0.12242					90	32	4	0	0	0	0.98542	1	11317	11317		40.058	3.6114	1	1604000			21303	12786	14677	14710	24623	24623					0.07820799534783873
GRLTALLGSTT	11	Unmodified	_GRLTALLGSTT_					0	0	0		ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.316763	1088.61897	-0.30292	-0.00016519	0.10816	5.8979E-05	-0.19476	-0.00010621	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.97926	1	10956	10956		41.427	2.1738	1	17068000			21304	12786	14677	14710	24624	24624					0.07820799534783873
GRLTICTISC	10	Unmodified	_GRLTICTISC_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7928466796875	2	533.772819	1065.53109	-1.3513	-0.00072129	-2.2095	-0.0011794	-3.5608	-0.0019007	533.7723500688655	44.548	0.21546	44.335	44.219	44.434	-0.21303					7	5	2	0	0	0	0.03519	1	4149	4149		65.465	21.349	1	67163			21305	3679	14678	14711	24625	24625					0.0009413934815256653
GRLTKHTT	8	Unmodified	_GRLTKHTT_					0	0	0			REV__nc|ENSG00000176974|P34896-3|SHMT1;REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2641296386719	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.97924	1	10114	10114		40.573	7.057	1	2903100	+		21306	27457;27070	14679	14712	24626	24626					0.054357228488470355
GRLTLGRN	8	Unmodified	_GRLTLGRN_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.7646484375	2	443.764501	885.514448	0.12053	5.3487E-05	-0.029402	-1.3048E-05	0.091129	4.044E-05	443.76444607559887	78.654	3.0913	78.399	77.578	80.67	-0.25471					182	73	3	0	0	0	1.043	1	9579	9579		30.504	1.3541	1	709500	+	+	21307	19583	14680	14713	24627	24627					0.06711142568701689
GRLWRSRH	8	Unmodified	_GRLWRSRH_					0	0	0			REV__ENST00000418107.2_1_6:32906702-32908822:-|nuORF	REV__ENST00000418107.2_1_6:32906702-32908822:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2840576171875	2	534.302116	1066.58968	-1.2185	-0.00065106	-1.1476	-0.00061316	-2.3661	-0.0012642	534.3013176795572	37.807	0.9969	37.839	37.339	38.336	0.032272					57	27	3	0	0	0	0.027866	1	3108	3108		31.955	3.7006	1	480080	+		21308	32109	14681	14714	24628	24628					0.05904744819804364
GRMDFPMNA	9	Unmodified	_GRMDFPMNA_					0	0	0		ENST00000397786.6_1_17:60129973-60140505:-|nuORF	ENST00000397786.6_1_17:60129973-60140505:-|nuORF	ENST00000397786.6_1_17:60129973-60140505:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2689208984375	2	519.728412	1037.44227	-0.43462	-0.00022588	1.7076	0.00088747	1.2729	0.00066158	519.7291567483122	74.935	0.35903	74.935	74.757	75.116	0					13	8	2	0	0	0	0.024319	1	9193	9193		47.657	0	1	113660			21309	13603	14682	14715	24629	24629					-0.07495275891528763
GRMFYAITLL	10	Unmodified	_GRMFYAITLL_					0	0	0		ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	592.803955078125	2	592.828452	1183.64235	0.33934	0.00020117	-0.61453	-0.00036431	-0.27519	-0.00016314	592.8279518218048	25.492	0.45816	25.572	25.377	25.835	0.080088					17	10	2	0	0	0	0.03519	1	1199	1199		44.117	8.4985	1	85933			21310	9313	14683	14716	24630	24630					0.05787522047717175
GRMFYAITLL	10	Unmodified	_GRMFYAITLL_					0	0	0		ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	592.828452	1183.64235	-2.0378	-0.001208	1.5875	0.0009411	-0.45028	-0.00026694	592.8293252515585	25.647	0.51252	25.647	25.445	25.957	0	0.020779	0.0011614	NaN	44.117	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91519			21311	9313	14683	14716							0.05787522047717175
GRMFYAITLL	10	Unmodified	_GRMFYAITLL_					0	0	0		ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	592.828452	1183.64235	-1.5249	-0.00090401	0.85929	0.00050941	-0.66562	-0.0003946	592.8289051579054	25.695	0.5104	25.66	25.432	25.943	-0.034395	0.033606	0.00029802	NaN	44.117	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96981			21312	9313	14683	14716							0.05787522047717175
GRMRSPGSLP	10	Unmodified	_GRMRSPGSLP_					0	0	0		nc|ENSG00000178928|Q8N7U7-2|TPRX1;nc|ENSG00000178928|Q8N7U7|TPRX1;ENSG00000178928|ENST00000698655|TPRX1	nc|ENSG00000178928|Q8N7U7-2|TPRX1	nc|ENSG00000178928|Q8N7U7-2|TPRX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2982788085938	2	529.2822	1056.54985	-0.40223	-0.00021289	-2.1094	-0.0011165	-2.5116	-0.0013294	529.2809164982825	50.828	0.19627	50.679	50.561	50.758	-0.14915					7	5	2	0	0	0	0.03519	1	5327	5327		32.812	8.2932	1	64088			21313	8845	14684	14717	24631	24631					0.02383437034200142
GRMWGLWLV	9	Unmodified	_GRMWGLWLV_					0	0	0		ENST00000518462.1_1_7:150066562-150066703:+|nuORF	ENST00000518462.1_1_7:150066562-150066703:+|nuORF	ENST00000518462.1_1_7:150066562-150066703:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2698364257812	2	559.302404	1116.59026	0.7093	0.00039671	0.44448	0.0002486	1.1538	0.00064531	559.3031920194333	62.96	0.47861	63.015	62.719	63.198	0.054104					23	11	3	0	0	0	0.024354	1	7226	7226		57.811	8.3697	1	346300			21314	15930	14685	14718	24632	24632					0.036624034246187875
GRMYILGLIMM	11	Unmodified	_GRMYILGLIMM_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.7513427734375	3	433.23249	1296.67564	-0.081699	-3.5395E-05	1.5917	0.00068958	1.51	0.00065419	433.23310846111366	19.783	0.42893	19.664	19.348	19.777	-0.11872					11	8	2	0	0	0	0.024739	1	435	435		28.577	15.619	1	21843	+		21315	27109	14686	14719	24633	24633					0.03917064503752954
GRNALERH	8	Unmodified	_GRNALERH_					0	0	0		GABRB2|p.A461G|1|0.1|ENSG00000145864|chr5:161294238-161294238|G/C|missense_variant;nc|ENSG00000145864|P47870-1|GABRB2;ENSG00000145864|ENST00000393959|GABRB2	GABRB2|p.A461G|1|0.1|ENSG00000145864|chr5:161294238-161294238|G/C|missense_variant	GABRB2|p.A461G|1|0.1|ENSG00000145864|chr5:161294238-161294238|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7591247558594	2	476.757207	951.499861	0.83708	0.00039909	0.58917	0.00028089	1.4262	0.00067997	476.7575817068251	100.79	1.3062	100.66	100.28	101.58	-0.13364					59	31	2	0	0	0	1.0198	1	12529	12529		34.173	0.65696	1	172540			21316	5844	14687	14720	24634	24634					0.022170704205564107
GRNFPFKN	8	Unmodified	_GRNFPFKN_					0	0	0		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2650451660156	2	490.259051	978.503549	-0.068469	-3.3567E-05	2.071	0.0010153	2.0026	0.00098178	490.2607369837598	102.89	1.8693	102.76	102.36	104.23	-0.12783					75	48	2	0	0	0	1.0572	1	12886	12886		28.254	1.4582	1	299510			21317	16130	14688	14721	24635	24635					0.013437401944202065
GRNHLVLRL	9	Unmodified	_GRNHLVLRL_					0	0	0		ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	ENSG00000158008|ENST00000374280|EXTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7688598632812	2	539.335624	1076.6567	0.88908	0.00047951	-0.78129	-0.00042138	0.10779	5.8133E-05	539.3348336456608	19.061	0.39487	19.061	18.873	19.268	0					12	7	2	0	0	0	0.024506	1	355	355		30.504	9.5567	1	44070			21318	6637	14689	14722	24636	24636					0.12143355310877268
GRNLCTNL	8	Carbamidomethyl (C)	_GRNLC(Carbamidomethyl (C))TNL_	GRNLC(1)TNL		GRNLC(61)TNL		0	1	0			REV__ENSG00000034693|ENST00000367591|PEX3	REV__ENSG00000034693|ENST00000367591|PEX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.23797607421875	2	474.240001	946.465449	1.1562	0.00054833	-4.4803	-0.0021247	-3.3241	-0.0015764	474.2377342674611	72.309	0.9318	72.309	71.978	72.91	0					47	22	3	0	0	0	0.77775	1	8795	8795		60.972	13.315	1	1147300	+		21319	20059	14690	14723	24637	24637	257				-0.00992513782568949
GRNRARPPK	9	Unmodified	_GRNRARPPK_					0	0	0			REV__ENST00000380094.9_1_10:5931461-5931704:-|nuORF	REV__ENST00000380094.9_1_10:5931461-5931704:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.311767578125	2	526.315223	1050.61589	0.032707	1.7214E-05	2.3462	0.0012349	2.3789	0.0012521	526.3162818956467	36.986	0.37487	36.922	36.789	37.163	-0.063385					13	9	2	0	0	0	0.024405	1	2944	2944		27.882	11.409	1	96694	+		21320	31461	14691	14724	24638	24638					0.09261013991249456
GRPAPPIGIL	10	Unmodified	_GRPAPPIGIL_					0	0	0			REV__ENSG00000113013|ENST00000297185|HSPA9	REV__ENSG00000113013|ENST00000297185|HSPA9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.8045349121094	2	495.808377	989.6022	0.1459	7.2339E-05	-4.4271	-0.002195	-4.2812	-0.0021227	495.8061499300666	90.036	1.1313	89.898	89.532	90.663	-0.13825					74	26	4	0	0	0	1.0142	1	10995	10995		44.117	5.3107	1	779110	+		21321	22037	14692	14725	24639	24639					0.10698343439469227
GRPFAVKGY	9	Unmodified	_GRPFAVKGY_					0	0	0			REV__ENST00000368322.7_1_1:155880526-155880680:-|nuORF	REV__ENST00000368322.7_1_1:155880526-155880680:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.25091552734375	2	497.777077	993.5396	-0.56798	-0.00028273	-2.3049	-0.0011473	-2.8729	-0.0014301	497.7758365592688	29.031	0.71443	29.034	28.755	29.469	0.0031357					26	17	2	0	0	0	0.024436	1	1732	1732		23.042	14.22	1	731620	+		21322	31048	14693	14726	24640	24640					0.04257197371271104
GRPGLVRVEL	10	Unmodified	_GRPGLVRVEL_					0	0	0			REV__nc|ENSG00000136068|O75369-7|FLNB	REV__nc|ENSG00000136068|O75369-7|FLNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8099975585938	2	548.33529	1094.65603	-0.50041	-0.00027439	1.0697	0.00058656	0.56929	0.00031216	548.3351907244991	54.325	0.58935	54.177	53.921	54.511	-0.14723					25	16	2	0	0	0	0.03519	1	5915	5915		26.693	0	1	174960	+		21323	23622	14694	14727	24641	24641					0.11248515871170639
GRPHIAAPL	9	Unmodified	_GRPHIAAPL_					0	0	0			REV__ENST00000466602.1_1_2:219647134-219677473:+|nuORF	REV__ENST00000466602.1_1_2:219647134-219677473:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2865905761719	2	466.277244	930.539935	-0.7601	-0.00035442	-2.3218	-0.0010826	-3.0819	-0.001437	466.27659183059416	61.878	0.36563	61.878	61.643	62.009	0					18	9	3	0	0	0	0.024357	1	7150	7150		35.201	0	1	135950	+		21324	33042	14695	14728	24642	24642					0.07188617091128435
GRPKKKRE	8	Unmodified	_GRPKKKRE_					0	0	0			REV__ENST00000519935.1_1_7:27209327-27211245:+|nuORF	REV__ENST00000519935.1_1_7:27209327-27211245:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.2723388671875	2	499.814525	997.614496	-0.47937	-0.0002396	2.3583	0.0011787	1.8789	0.00093909	500.31768042627516	39.53	0.35363	39.307	39.149	39.503	-0.22311					17	8	3	0	0	0	0.027866	1	3352	3352		40.573	13.777	1	209940	+		21325	34278	14696	14729	24643	24643					0.11559379902507771
GRPKKKRE	8	Unmodified	_GRPKKKRE_					0	0	0			REV__ENST00000519935.1_1_7:27209327-27211245:+|nuORF	REV__ENST00000519935.1_1_7:27209327-27211245:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2721252441406	2	499.814525	997.614496	-0.34421	-0.00017204	2.8104	0.0014047	2.4662	0.0012327	500.3174190087469	39.517	0.45193	39.291	39.059	39.511	-0.2257					15	11	2	0	0	0	0.027866	1	3340	3340		45.952	13.997	1	193720	+		21326	34278	14696	14729	24644	24644					0.11559379902507771
GRPLLLKVID	10	Unmodified	_GRPLLLKVID_					0	0	0			REV__nc|ENSG00000029534|P16157-2|ANK1	REV__nc|ENSG00000029534|P16157-2|ANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3237915039062	2	562.363516	1122.71248	-0.36849	-0.00020722	0.57652	0.00032421	0.20803	0.00011699	562.3629113073594	69.447	0.20372	69.224	69.103	69.307	-0.22245					7	4	2	0	0	0	0.03519	1	8044	8044		31.53	12.17	1	60149	+		21327	20038	14697	14730	24645	24645					0.1560314370785818
GRPLLRWS	8	Unmodified	_GRPLLRWS_					0	0	0			REV__ENST00000403000.6_1_8:145689231-145689483:-|nuORF	REV__ENST00000403000.6_1_8:145689231-145689483:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.6993103027344	2	492.790518	983.566484	-0.39439	-0.00019435	-1.2651	-0.00062342	-1.6595	-0.00081777	492.7897151528983	28.697	0.46331	28.545	28.36	28.824	-0.15195					12	10	2	0	0	0	0.027866	1	1673	1673		38.806	8.3025	1	68041	+		21328	31883	14698	14731	24646	24646					0.07404305982470305
GRPLPWGP	8	Unmodified	_GRPLPWGP_					0	0	0		ENST00000541683.1_1_11:61583368-61584034:-|nuORF;ENST00000473263.1_1_11:61583368-61583614:-|nuORF	ENST00000541683.1_1_11:61583368-61584034:-|nuORF	ENST00000541683.1_1_11:61583368-61584034:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.27423095703125	2	440.245412	878.476272	0.48676	0.00021429	2.2591	0.00099457	2.7459	0.0012089	440.2465506364634	42.888	0.65758	42.915	42.529	43.186	0.026012					20	17	2	0	0	0	0.027866	1	3928	3928		33.516	5.2613	1	68629			21329	15006	14699	14732	24647	24647					0.032172566540339176
GRPPCAQAE	9	Unmodified	_GRPPCAQAE_					0	0	0			REV__ENST00000409262.7_1_2:74328134-74328503:+|nuORF	REV__ENST00000409262.7_1_2:74328134-74328503:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2615966796875	2	464.718901	927.42325	-0.24371	-0.00011326	-3.3061	-0.0015364	-3.5498	-0.0016496	464.71719453375886	22.869	0.49542	22.804	22.612	23.107	-0.064955					16	10	2	0	0	0	0.02435	1	809	809		34.173	5.023	1	97285	+		21330	31955	14700	14733	24648	24648					-0.04336489190939119
GRPPGLTL	8	Unmodified	_GRPPGLTL_					0	0	0			REV__ENST00000468115.1_1_7:1523234-1533501:-|nuORF	REV__ENST00000468115.1_1_7:1523234-1533501:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7455139160156	2	405.745245	809.475937	1.5373	0.00062374	-0.82025	-0.00033281	0.71703	0.00029093	405.7446313913963	45.406	2.3016	45.45	44.966	47.267	0.043877					142	65	5	0	0	0	0.53523	1	4327	4327		82.305	2.3658	1	48799000	+		21331	33095	14701	14734	24649	24649					0.06357836934171246
GRPQALGN	8	Unmodified	_GRPQALGN_					0	0	0		ENST00000344111.3_1_7:1007829-1008150:-|nuORF	ENST00000344111.3_1_7:1007829-1008150:-|nuORF	ENST00000344111.3_1_7:1007829-1008150:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.2638244628906	2	406.722301	811.43005	0.67843	0.00027593	2.4379	0.00099155	3.1163	0.0012675	406.72233166463445	21.463	0.24407	21.272	21.128	21.372	-0.19072					6	4	2	0	0	0	0.027866	1	660	660		25.45	9.8084	1	7344.2			21332	12543	14702	14735	24650	24650					0.016791917519299204
GRPQNRHTVG	10	Unmodified	_GRPQNRHTVG_					0	0	0			REV__ENSG00000160255|ENST00000652462|ITGB2	REV__ENSG00000160255|ENST00000652462|ITGB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.84619140625	2	561.29977	1120.58499	0.15421	8.6556E-05	1.5044	0.00084442	1.6586	0.00093098	561.3004687484513	95.929	0.59368	95.935	95.435	96.028	0.0065002					23	13	2	0	0	0	0.03519	1	12126	12126		39.253	10.103	1	134700	+		21333	25302	14703	14736	24651	24651					0.029518158863311328
GRPRKVEV	8	Unmodified	_GRPRKVEV_					0	0	0			REV__nc|ENSG00000130175|P14314-2|PRKCSH	REV__nc|ENSG00000130175|P14314-2|PRKCSH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2960510253906	2	470.787976	939.561398	3.7946	0.0017865	-2.8715	-0.0013519	0.92315	0.00043461	470.78635047548653	18.87	0.64061	18.933	18.845	19.485	0.063307					28	12	3	0	0	0	0.027866	1	299	299		31.955	0	1	183170	+		21334	23088	14704	14737	24652	24652					0.08920002119850778
GRPRLRVGR	9	Unmodified	_GRPRLRVGR_					0	0	0		ENST00000320017.10_1_3:47459280-47460886:-|nuORF;ENST00000265565.9_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7740478515625	2	533.838865	1065.66318	-0.23932	-0.00012776	2.725	0.0014547	2.4857	0.001327	533.8402461292726	50.626	0.59092	50.346	50.108	50.699	-0.27977					35	15	3	0	0	0	0.024457	1	5201	5201		37.159	0	1	861060			21335	11597	14705	14738	24653	24653					0.1329729326225788
GRPRLSLLAC	10	Unmodified	_GRPRLSLLAC_					0	0	0			REV__ENST00000361762.3_2_4:30722038-30722191:+|nuORF	REV__ENST00000361762.3_2_4:30722038-30722191:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.3258666992188	2	543.316043	1084.61753	-0.46215	-0.00025109	0.32572	0.00017697	-0.13643	-7.4124E-05	543.3160938708372	103.37	1.0781	103.25	102.91	103.99	-0.12784					36	25	2	0	0	0	0.03519	1	12927	12927		15.642	0	1	153450	+		21336	30949	14706	14739	24654	24654					0.07860886964999736
GRPRPLPAGP	10	Unmodified	_GRPRPLPAGP_					0	0	0		ENST00000373433.8_1_20:36662231-36662363:+|nuORF	ENST00000373433.8_1_20:36662231-36662363:+|nuORF	ENST00000373433.8_1_20:36662231-36662363:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2735290527344	2	509.30125	1016.58795	-0.26239	-0.00013364	-4.205	-0.0021416	-4.4674	-0.0022753	509.2990123451291	75.627	0.67197	75.354	75.103	75.775	-0.27266					26	16	2	0	0	0	0.03519	1	8945	8945		26.693	0	1	524250			21337	13077	14707	14740	24655	24655					0.08031691011160547
GRPRSVGAF	9	Unmodified	_GRPRSVGAF_					0	0	0			REV__nc|ENSG00000029363|Q9NYF8-4|BCLAF1	REV__nc|ENSG00000029363|Q9NYF8-4|BCLAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.7506103515625	2	473.764501	945.514448	-0.16348	-7.745E-05	-0.63583	-0.00030123	-0.79931	-0.00037868	473.76442553714656	28.532	0.79613	28.532	28.151	28.947	0					64	18	5	0	0	0	0.024381	1	1647	1647		37.159	0	1	1099800	+		21338	20037	14708	14741	24656	24656					0.03951142568712385
GRPSWAACPE	10	Unmodified	_GRPSWAACPE_					0	0	0			REV__nc|ENSG00000179388|Q06889-2|EGR3	REV__nc|ENSG00000179388|Q06889-2|EGR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3316650390625	2	537.245283	1072.47601	-0.27727	-0.00014896	-0.064116	-3.4446E-05	-0.34139	-0.00018341	537.2453596598282	47.076	0.4516	46.806	46.561	47.013	-0.26939					18	12	2	0	0	0	0.03519	1	4588	4588		30.318	3.6248	1	122580	+		21339	36983	14709	14742	24657	24657					-0.057325311281374525
GRPTIKNE	8	Unmodified	_GRPTIKNE_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.25433349609375	2	457.756341	913.498129	-0.73216	-0.00033515	-1.1413	-0.00052245	-1.8735	-0.0008576	457.75630284194165	20.632	2.1306	20.632	19.689	21.819	0					121	43	5	0	0	0	0.95679	1	612	612		44.117	0	1	8141900			21340	1169	14710	14743	24658	24658					0.03792016611942017
GRQAVPLAALR	11	Unmodified	_GRQAVPLAALR_					0	0	0			REV__ENST00000348354.6_1_21:18981451-18985174:-|nuORF	REV__ENST00000348354.6_1_21:18981451-18985174:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.353515625	2	576.354014	1150.69348	-0.65112	-0.00037528	-0.2532	-0.00014593	-0.90432	-0.00052121	576.3538902597289	44.679	0.83078	44.715	44.41	45.24	0.0369					78	23	6	0	0	0	0.96599	1	4230	4230		44.377	2.9506	1	5408600	+		21341	30713	14711	14744	24659	24659					0.1241560713679064
GRQEYNFN	8	Unmodified	_GRQEYNFN_					0	0	0			REV__nc|ENSG00000166181|Q9BZZ5-6|API5	REV__nc|ENSG00000166181|Q9BZZ5-6|API5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	514.23323	1026.45191	-0.22933	-0.00011793	-0.06922	-3.5595E-05	-0.29855	-0.00015352	514.2331430884703	67.503	0.32249	67.526	67.389	67.712	0.023903					12	7	2	0	0	0	0.027866	1	7967	7967		45.952	13.14	1	56017	+		21342	25987	14712	14745	24660	24660					-0.060260482901412615
GRQFHPVM	8	Unmodified	_GRQFHPVM_					0	0	0		ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	ENST00000263119.9_1_22:24432555-24437617:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31304931640625	2	486.247629	970.480705	0.046746	2.273E-05	-2.8957	-0.001408	-2.8489	-0.0013853	486.2479697096647	40.28	0.17776	40.28	40.137	40.314	0					6	4	2	0	0	0	0.027866	1	3517	3517		25.45	5.4534	1	36835			21343	11522	14713	14746	24661	24661					-0.005716021947023364
GRQGLALL	8	Unmodified	_GRQGLALL_					0	0	0		ENST00000561611.2_1_16:72513659-72698865:-|nuORF	ENST00000561611.2_1_16:72513659-72698865:-|nuORF	ENST00000561611.2_1_16:72513659-72698865:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.57196044921875	2	414.25852	826.502486	-0.44803	-0.0001856	0.54553	0.00022599	0.097501	4.0391E-05	414.25874427855126	40.487	0.69094	40.51	40.349	41.04	0.023006					24	19	2	0	0	0	0.027866	1	3529	3529		26.796	8.4717	1	145860			21344	16831	14714	14747	24662	24662					0.08229525825504425
GRQGLALL	8	Unmodified	_GRQGLALL_					0	0	0		ENST00000561611.2_1_16:72513659-72698865:-|nuORF	ENST00000561611.2_1_16:72513659-72698865:-|nuORF	ENST00000561611.2_1_16:72513659-72698865:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	414.25852	826.502486	0.94557	0.00039171	-0.07539	-3.1231E-05	0.87018	0.00036048	414.25848117766463	40.331	0.69825	40.331	40.137	40.835	0	-0.089189	-0.00016343	NaN	26.796	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121600			21345	16831	14714	14747							0.08229525825504425
GRQGVAVLR	9	Unmodified	_GRQGVAVLR_					0	0	0			REV__ENST00000375750.7_1_6:31707746-31708989:+|nuORF	REV__ENST00000375750.7_1_6:31707746-31708989:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7720947265625	2	478.293425	954.572297	-0.16987	-8.1246E-05	-0.37748	-0.00018055	-0.54734	-0.00026179	478.2929991109186	44.68	0.55726	44.716	44.509	45.067	0.0369					30	15	4	0	0	0	0.024	1	4225	4225		37.159	0	1	456510	+		21346	31338	14715	14748	24663	24663					0.0931940449411286
GRQHPTNPN	9	Unmodified	_GRQHPTNPN_					0	0	0		TYR|p.G254R|1|0.27|ENSG00000077498|chr11:89178713-89178713|G/C|missense_variant	TYR|p.G254R|1|0.27|ENSG00000077498|chr11:89178713-89178713|G/C|missense_variant	TYR|p.G254R|1|0.27|ENSG00000077498|chr11:89178713-89178713|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7891845703125	2	510.752121	1019.48969	-0.31673	-0.00016177	3.5538	0.0018151	3.2371	0.0016534	510.7547758037009	85.691	0.79507	85.633	85.355	86.15	-0.057617					35	18	3	0	0	0	0.024477	1	10755	10755		27.882	4.3595	1	469320			21347	38121	14716	14749	24664	24664					-0.019275373046866662
GRQKIKSTD	9	Unmodified	_GRQKIKSTD_					0	0	0			REV__ENST00000449529.1_1_10:18944066-18948134:-|nuORF	REV__ENST00000449529.1_1_10:18944066-18948134:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2677001953125	2	516.793455	1031.57236	-0.33993	-0.00017567	-4.2232	-0.0021825	-4.5631	-0.0023582	516.790887877937	31.391	0.29115	31.402	31.214	31.505	0.011797					10	6	2	0	0	0	0.024466	1	2090	2090		47.657	12.039	1	91618	+		21348	32045	14717	14750	24665	24665					0.057833597034687045
GRQKIKSTD	9	Unmodified	_GRQKIKSTD_					0	0	0			REV__ENST00000449529.1_1_10:18944066-18948134:-|nuORF	REV__ENST00000449529.1_1_10:18944066-18948134:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.793455	1031.57236	-0.3713	-0.00019189	-6.4819	-0.0033498	-6.8532	-0.0035417	516.78960194885	31.426	0.30023	31.185	30.995	31.295	-0.24109	-0.1028	-0.0011411	NaN	47.657	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57976	+		21349	32045	14717	14750							0.057833597034687045
GRQKIKSTD	9	Unmodified	_GRQKIKSTD_					0	0	0			REV__ENST00000449529.1_1_10:18944066-18948134:-|nuORF	REV__ENST00000449529.1_1_10:18944066-18948134:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.793455	1031.57236	-0.23104	-0.0001194	-6.0537	-0.0031285	-6.2848	-0.0032479	516.7899125853016	31.3	0.3368	31.115	30.984	31.321	-0.18503	-0.17284	-0.00069857	NaN	47.657	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52047	+		21350	32045	14717	14750							0.057833597034687045
GRQKNAEKV	9	Unmodified	_GRQKNAEKV_					0	0	0			REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3080444335938	2	515.293622	1028.57269	-1.004	-0.00051737	-2.29	-0.00118	-3.294	-0.0016974	515.7933595831831	62.824	0.32863	62.824	62.651	62.98	0					10	7	2	0	0	0	0.023635	1	7314	7314		66.429	22.052	1	135120	+		21351	21667	14718	14751	24666	24666					0.05954779423313994
GRQKVAKAR	9	Unmodified	_GRQKVAKAR_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2920837402344	2	507.319974	1012.6254	-0.33524	-0.00017007	2.4744	0.0012553	2.1392	0.0010852	507.32092881109367	61.586	0.45805	61.586	61.374	61.832	0					18	11	2	0	0	0	0.024436	1	7114	7114		6.3127	2.3274	1	293330	+		21352	24041	14719	14752	24667	24667					0.11958782276781221
GRQKVAKAR	9	Unmodified	_GRQKVAKAR_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.319974	1012.6254	-0.083802	-4.2514E-05	3.0174	0.0015308	2.9336	0.0014883	507.3212596929767	61.722	0.40376	61.509	61.334	61.737	-0.21375	-0.062637	0.00013768	NaN	2.9294	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278700	+		21353	24041	14719	14752							0.11958782276781221
GRQKVAKAR	9	Unmodified	_GRQKVAKAR_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.319974	1012.6254	-0.96963	-0.00049191	3.5598	0.001806	2.5902	0.001314	507.3214861693522	61.709	0.5176	61.531	61.287	61.804	-0.17781	-0.039827	0.00068799	NaN	2.9294	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181930	+		21354	24041	14719	14752							0.11958782276781221
GRQLHITIA	9	Unmodified	_GRQLHITIA_					0	0	0		ENSG00000162542|ENST00000294543|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.32159423828125	2	504.801083	1007.58761	2.5204	0.0012723	-2.7653	-0.0013959	-0.24492	-0.00012363	504.79949153060477	18.665	0.24924	18.423	18.274	18.524	-0.24256					6	4	2	0	0	0	0.024541	1	299	299		17.365	0.89182	1	24640			21355	6951	14720	14753	24668	24668					0.0841227129131994
GRQNLTVKD	9	Unmodified	_GRQNLTVKD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;TTN|p.R2317L|1|0.3|ENSG00000155657|chr2:178774314-178774314|C/A|missense_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8087158203125	2	515.78563	1029.55671	-0.0090124	-4.6485E-06	2.8048	0.0014467	2.7958	0.001442	516.2878369127287	67.679	0.62044	67.679	67.367	67.987	0					34	15	3	0	0	0	0.024261	1	8057	8057		54.776	19.624	1	455600			21356	6479;18400	14721	14754	24669	24669					0.04311073186408976
GRQREMGRET	10	Unmodified	_GRQREMGRET_					0	0	0			REV__ENST00000367029.4_1_1:209849344-209849512:+|nuORF	REV__ENST00000367029.4_1_1:209849344-209849512:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2250671386719	3	407.203527	1218.58875	1.0469	0.00042632	-4.1204	-0.0016779	-3.0735	-0.0012515	407.2019497189199	26.44	0.34411	26.521	26.414	26.758	0.081293					10	7	2	0	0	0	0.03519	1	1314	1314		6.3209	0	1	38400	+		21357	30999	14722	14755	24670	24670					-0.011798824020843313
GRQSFYRN	8	Unmodified	_GRQSFYRN_					0	0	0		nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;ENSG00000132958|ENST00000697147|TPTE2;nc|ENSG00000132958|Q6XPS3-4|TPTE2;nc|ENSG00000132958|Q6XPS3-7|TPTE2;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE	nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000274391|P56180-4|TPTE	nc|ENSG00000274391|P56180-4|TPTE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	514.25704	1026.49953	-0.30054	-0.00015456	2.0055	0.0010313	1.7049	0.00087677	514.2580505914225	67.319	0.51796	67.343	67.23	67.748	0.023911					19	12	2	0	0	0	0.027866	1	7967	7967		38.806	0	1	218010			21358	4667;11028	14723	14756	24671	24671					-0.012663492992942338
GRQTDQTAK	9	Unmodified	_GRQTDQTAK_					0	0	0			REV__ENST00000589017.5_1_17:66507964-66511234:+|nuORF	REV__ENST00000589017.5_1_17:66507964-66511234:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2926330566406	2	502.759612	1003.50467	-0.88907	-0.00044699	-2.9682	-0.0014923	-3.8572	-0.0019393	502.7576228288977	39.285	1.7913	39.187	38.278	40.069	-0.098755					120	48	4	0	0	0	0.023842	1	3317	3317		58.23	0	1	1167700	+		21359	35661	14724	14757	24672	24672					0.003059097726691107
GRRAAGSFFE	10	Unmodified	_GRRAAGSFFE_					0	0	0		ENST00000468249.1_1_22:50968911-50969740:-|nuORF;ENST00000405135.5_1_22:50968911-50969740:-|nuORF;ENST00000463472.1_1_22:50969089-50969740:-|nuORF;ENST00000469660.1_1_22:50969089-50970101:-|nuORF;ENSG00000177989|ENST00000329363|ODF3B	ENST00000468249.1_1_22:50968911-50969740:-|nuORF	ENST00000468249.1_1_22:50968911-50969740:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.2791137695312	2	549.277972	1096.54139	0.098956	5.4355E-05	1.7582	0.00096573	1.8571	0.0010201	549.2789061279226	77.852	0.74054	77.641	77.376	78.117	-0.21087					36	16	3	0	0	0	1.0616	1	9611	9611		37.812	2.1932	1	1939000			21360	8781	14725	14758	24673	24673					-0.0030179361078808142
GRRAAPAL	8	Unmodified	_GRRAAPAL_					0	0	0		ENST00000465703.5_1_6:31929724-31930734:+|nuORF	ENST00000465703.5_1_6:31929724-31930734:+|nuORF	ENST00000465703.5_1_6:31929724-31930734:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2486877441406	2	406.248486	810.48242	0.91382	0.00037124	-0.70868	-0.0002879	0.20513	8.3334E-05	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0574	1	10683	10683		26.796	0	1	86727000			21361	14791	14726	14759	24674	24674					0.06959774885547176
GRRAGLAEADL	11	Unmodified	_GRRAGLAEADL_					0	0	0			REV__ENST00000388712.7_2_9:88694245-88714458:-|nuORF	REV__ENST00000388712.7_2_9:88694245-88714458:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8447875976562	2	564.809636	1127.60472	-0.16581	-9.3653E-05	2.086	0.0011782	1.9202	0.0010846	564.8105728253388	65.582	0.83894	65.582	65.226	66.065	0					64	22	4	0	0	0	0.024741	1	7814	7814		30.318	19.452	1	2471400	+		21362	31560	14727	14760	24675	24675					0.04602147106447774
GRRAGMRRP	9	Unmodified	_GRRAGMRRP_					0	0	0			REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	REV__ENST00000463704.5_1_2:74710599-74710659:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7723388671875	2	528.801426	1055.5883	-0.5054	-0.00026726	-4.143	-0.0021909	-4.6485	-0.0024581	528.7990652950618	28.468	0.49138	28.316	28.121	28.612	-0.15195					17	11	2	0	0	0	0.024436	1	1663	1663		30.504	2.4222	1	244680	+		21363	32943	14728	14761	24676	24676					0.0627278745937474
GRRAGVVP	8	Unmodified	_GRRAGVVP_					0	0	0			REV__nc|ENSG00000085644|O14771-2|ZNF213	REV__nc|ENSG00000085644|O14771-2|ZNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.248779296875	2	406.248486	810.48242	0.91382	0.00037124	-0.70868	-0.0002879	0.20513	8.3334E-05	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0572	1	10816	10816		28.254	1.4582	1	86727000	+		21364	20755	14729	14762	24677	24677					0.06959774885558545
GRRAPGPATAS	11	Unmodified	_GRRAPGPATAS_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7841186523438	2	520.783422	1039.55229	-0.25443	-0.0001325	1.5447	0.00080446	1.2903	0.00067196	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	1.013	1	13286	13286		33.922	6.0394	1	3782600			21365	7608	14730	14763	24678	24678					0.034096087634907235
GRRAWPRLGH	10	Unmodified	_GRRAWPRLGH_					0	0	0			REV__ENST00000315251.10_1_3:53857337-53857781:-|nuORF	REV__ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	604.3157958984375	2	603.341772	1204.66899	-0.14961	-9.0265E-05	2.8906	0.001744	2.741	0.0016538	603.3433234486691	56.619	0.5009	56.417	56.171	56.672	-0.20208					26	12	3	0	0	0	0.03519	1	6163	6163		20.947	0	1	283180	+		21366	30260	14731	14764	24679	24679					0.07484391773914467
GRRENQLK	8	Unmodified	_GRRENQLK_					0	0	0		ENSG00000141068|ENST00000644974|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5-2|KSR1	ENSG00000141068|ENST00000644974|KSR1	ENSG00000141068|ENST00000644974|KSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.787109375	2	500.785964	999.557376	0.31839	0.00015945	3.8573	0.0019317	4.1757	0.0020911	500.7873335854367	87.665	1.5281	87.629	87.068	88.596	-0.035362					84	36	4	0	0	0	0.50239	1	11023	11023		85.359	0.19866	1	3114400			21367	5468	14732	14765	24680	24680					0.05757912626120287
GRREQLWL	8	Unmodified	_GRREQLWL_					0	0	0		ENST00000600406.1_2_19:49378501-49378693:+|nuORF	ENST00000600406.1_2_19:49378501-49378693:+|nuORF	ENST00000600406.1_2_19:49378501-49378693:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2968139648438	2	529.298707	1056.58286	-0.71102	-0.00037634	-1.3269	-0.00070233	-2.0379	-0.0010787	529.298354266179	104.03	0.94317	104.03	103.56	104.5	0					30	22	2	0	0	0	1.0106	1	13344	13344		35.618	0.41757	1	63964			21368	17500	14733	14766	24681	24681					0.05683387148565089
GRREVLSP	8	Unmodified	_GRREVLSP_					0	0	0			REV__ENST00000251195.9_2_1:36235451-36235556:-|nuORF	REV__ENST00000251195.9_2_1:36235451-36235556:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2639465332031	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	1.0198	1	9682	9682		34.173	0.65696	1	4140300	+		21369	29498	14734	14767	24682	24682					0.054357228488470355
GRRGATWKFR	10	Unmodified	_GRRGATWKFR_					0	0	0		KCNH4|p.Q789Rfs*39|1|0.18|ENSG00000089558|chr17:42163718-42163718|G/-|frameshift_variant;ENSG00000089558|ENST00000264661|KCNH4	KCNH4|p.Q789Rfs*39|1|0.18|ENSG00000089558|chr17:42163718-42163718|G/-|frameshift_variant	KCNH4|p.Q789Rfs*39|1|0.18|ENSG00000089558|chr17:42163718-42163718|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	618.4214477539062	2	617.84943	1233.68431	-0.079994	-4.9424E-05	-1.3339	-0.00082414	-1.4139	-0.00087357	618.3512399663309	102.94	0.15428	102.81	102.71	102.86	-0.12724					5	3	2	0	0	0	0.03519	1	12785	12785		17.468	4.6563	1	48763			21370	1910	14735	14768	24683	24683					0.07681258571119542
GRRGPKAS	8	Unmodified	_GRRGPKAS_					0	0	0			REV__ENST00000559934.5_1_15:78833043-78833268:+|nuORF	REV__ENST00000559934.5_1_15:78833043-78833268:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.7617492675781	2	414.743568	827.472583	1.0415	0.00043194	-2.4646	-0.0010222	-1.4232	-0.00059025	414.7428058736231	87.747	0.55347	87.747	87.491	88.044	0					16	13	2	0	0	0	0.027866	1	11084	11084		40.573	3.4135	1	281560	+		21371	35129	14736	14769	24684	24684					0.05194586880179486
GRRHSKPKG	9	Unmodified	_GRRHSKPKG_					0	0	0		ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.7738342285156	2	511.801949	1021.58934	1.5775	0.00080735	-2.8752	-0.0014715	-1.2977	-0.00066416	511.799593641161	36.609	0.8782	36.411	36.016	36.894	-0.19829					32	21	2	0	0	0	0.024506	1	2935	2935		30.504	14.862	1	360050			21372	15926	14737	14770	24685	24685					0.07941325099943697
GRRHSKPKG	9	Unmodified	_GRRHSKPKG_					0	0	0		ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.801949	1021.58934	-0.0086398	-4.4219E-06	1.6277	0.00083305	1.619	0.00082863	511.80262938902297	36.667	0.63278	36.462	36.282	36.915	-0.20518	0.0087533	0.00023292	NaN	23.042	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325760			21373	15926	14737	14770							0.07941325099943697
GRRHSKPKG	9	Unmodified	_GRRHSKPKG_					0	0	0		ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	ENST00000518242.5_1_8:40554620-40625222:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.801949	1021.58934	-0.24374	-0.00012475	1.748	0.00089463	1.5043	0.00076988	511.8026536487633	36.703	0.52336	36.487	36.286	36.809	-0.21661	0.033643	0.00035607	NaN	23.042	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336650			21374	15926	14737	14770							0.07941325099943697
GRRIGSEFS	9	Unmodified	_GRRIGSEFS_					0	0	0		nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF	nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.81512451171875	2	504.764697	1007.51484	0.29154	0.00014716	2.0538	0.0010367	2.3453	0.0011838	504.7655274209228	74.442	1.0171	74.259	73.961	74.979	-0.18279					45	23	2	0	0	0	0.024523	1	8838	8838		29.15	16.943	1	769600			21375	9202	14738	14771	24686	24686					0.011385174978954637
GRRIGSEFS	9	Unmodified	_GRRIGSEFS_					0	0	0		nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF	nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.764697	1007.51484	0.16661	8.4099E-05	2.1106	0.0010654	2.2772	0.0011495	504.7656185252418	74.639	0.96953	74.364	74.045	75.015	-0.27573	0.033972	-2.4791E-05	NaN	15.642	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876080			21376	9202	14738	14771							0.011385174978954637
GRRIIDRTL	9	Unmodified	_GRRIIDRTL_					0	0	0		ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.75830078125	2	550.338364	1098.66217	-0.10009	-5.5081E-05	0.37207	0.00020476	0.27198	0.00014968	550.3381605865862	67.967	0.15041	67.985	67.93	68.08	0.018913					5	3	2	0	0	0	0.024457	1	8064	8064		37.159	9.2769	1	37205			21377	4063	14739	14772	24687	24687					0.11679034102712649
GRRIPNSL	8	Unmodified	_GRRIPNSL_					0	0	0		ENST00000375068.5_1_X:54834175-54835798:+|nuORF	ENST00000375068.5_1_X:54834175-54835798:+|nuORF	ENST00000375068.5_1_X:54834175-54835798:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.77215576171875	2	456.772326	911.530098	0.69424	0.00031711	-0.97041	-0.00044326	-0.27617	-0.00012615	456.77181425540806	89.099	2.1744	89.078	88.266	90.44	-0.021645					106	51	4	0	0	0	1.0009	1	11213	11213		37.159	0	1	3725800			21378	13146	14740	14773	24688	24688					0.07079429085729316
GRRKKMIS	8	Unmodified	_GRRKKMIS_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7832336425781	2	488.297653	974.580753	-0.40482	-0.00019767	1.871	0.00091362	1.4662	0.00071595	488.2987722913179	85.323	0.21087	85.265	85.186	85.397	-0.05761					8	4	2	0	0	0	0.027866	1	10663	10663		24.203	11.244	1	50140	+		21379	26723	14741	14774	24689	24689					0.09244635139111779
GRRKKMIS	8	Unmodified	_GRRKKMIS_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.297653	974.580753	0.9628	0.00047013	0.12601	6.1529E-05	1.0888	0.00053166	488.29780687651	85.335	0.33727	85.335	85.206	85.543	0	0.034817	-0.00082191	NaN	24.203	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31053	+		21380	26723	14741	14774							0.09244635139111779
GRRKPPLPP	9	Unmodified	_GRRKPPLPP_					0	0	0		ENST00000221466.9_1_19:50015996-50017250:+|nuORF	ENST00000221466.9_1_19:50015996-50017250:+|nuORF	ENST00000221466.9_1_19:50015996-50017250:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2735290527344	2	509.319443	1016.62433	-0.32642	-0.00016625	-2.2422	-0.001142	-2.5686	-0.0013083	509.8181675078847	75.795	0.23621	75.522	75.306	75.542	-0.27266					8	5	2	0	0	0	0.024517	1	8945	8945		19.36	2.8868	1	43909			21381	11183	14742	14775	24690	24690					0.11668567907884153
GRRLGGKG	8	Unmodified	_GRRLGGKG_					0	0	0		SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|78|3|anti-sense	SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|78|3|anti-sense	SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|78|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5570983886719	2	400.746111	799.477669	1.3218	0.0005297	-1.6689	-0.00066882	-0.34714	-0.00013912	400.7468955154445	72.671	0.21484	72.407	72.213	72.428	-0.26479					6	4	2	0	0	0	0.027866	1	8523	8523		7.6903	0	1	24660			21382	38019	14743	14776	24691	24691					0.06990890742804368
GRRLSVENP	9	Unmodified	_GRRLSVENP_					0	0	0		nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-4|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3	nc|ENSG00000256463|Q9BXA9-3|SALL3	nc|ENSG00000256463|Q9BXA9-3|SALL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2685546875	2	514.285797	1026.55704	-2.1007	-0.0010804	-1.1037	-0.00056761	-3.2044	-0.001648	514.2858406568959	38.245	0.20457	38.272	38.127	38.331	0.027275					7	5	2	0	0	0	0.024397	1	3115	3115		47.657	13.485	1	91032			21383	10908	14744	14777	24692	24692					0.044824929062770025
GRRPVRDD	8	Unmodified	_GRRPVRDD_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.290771484375	2	485.762489	969.510425	-0.18716	-9.0914E-05	-2.1944	-0.0010659	-2.3815	-0.0011569	485.76183823299954	25.623	0.75394	25.703	25.254	26.008	0.08009					24	17	2	0	0	0	0.027866	1	1127	1127		44.117	0	1	47175	+		21384	21674	14745	14778	24693	24693					0.02445053074984571
GRRPWPQAP	9	Unmodified	_GRRPWPQAP_					0	0	0		ENST00000274134.4_1_5:10442025-10442190:+|nuORF	ENST00000274134.4_1_5:10442025-10442190:+|nuORF	ENST00000274134.4_1_5:10442025-10442190:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.774658203125	2	532.79105	1063.56755	-0.13199	-7.032E-05	-1.0518	-0.00056037	-1.1837	-0.00063069	532.7903745013899	50.218	0.45721	50.299	50.085	50.543	0.08099					41	13	4	0	0	0	0.024487	1	5216	5216		31.955	0	1	1701400			21385	11678	14746	14779	24694	24694					0.03830520351357336
GRRQAVRGPAF	11	Unmodified	_GRRQAVRGPAF_					0	0	0		TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant;nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7451171875	3	405.567017	1213.67922	-0.063014	-2.5557E-05	2.4805	0.001006	2.4175	0.00098046	405.56813133600986	45.698	0.54641	45.546	45.276	45.823	-0.15156					28	15	2	0	0	0	0.024782	1	4455	4455		19.263	0	1	1166400			21386	5275	14747	14780	24695	24695					0.08092954708490652
GRRQHLAVS	9	Unmodified	_GRRQHLAVS_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7739562988281	2	512.293956	1022.57336	-1.0389	-0.00053224	-2.3752	-0.0012168	-3.4141	-0.001749	512.7930650434033	37.284	0.38512	37.064	36.846	37.231	-0.2195					10	9	2	0	0	0	0.024457	1	2958	2958		29.15	10.825	1	65747			21387	4246	14748	14781	24696	24696					0.0629761886302731
GRRRAKLI	8	Unmodified	_GRRRAKLI_					0	0	0			REV__ENST00000468005.1_1_7:23509745-23509856:-|nuORF	REV__ENST00000468005.1_1_7:23509745-23509856:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2908630371094	2	485.32506	968.635566	-1.0075	-0.00048895	4.0707	0.0019756	3.0632	0.0014867	485.32695943707085	25.309	0.31237	25.274	25.079	25.392	-0.034397					11	7	2	0	0	0	0.027866	1	1173	1173		26.796	2.5934	1	47715	+		21388	33089	14749	14782	24697	24697					0.14999390002026303
GRRRGAGARP	10	Unmodified	_GRRRGAGARP_					0	0	0		ENST00000597275.5_1_X:48911115-48911331:+|nuORF	ENST00000597275.5_1_X:48911115-48911331:+|nuORF	ENST00000597275.5_1_X:48911115-48911331:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3124389648438	2	527.310472	1052.60639	1.9399	0.0010229	0.30498	0.00016082	2.2449	0.0011837	527.3104331020087	19.976	0.38548	20.042	19.829	20.215	0.066195					19	7	3	0	0	0	1.0992	1	451	451		32.812	1.2826	1	146200			21389	17445	14750	14783	24698	24698					0.08219245705754474
GRRRGRLK	8	Unmodified	_GRRRGRLK_					0	0	0		ENST00000344458.6_1_2:220408458-220409493:+|nuORF	ENST00000344458.6_1_2:220408458-220409493:+|nuORF	ENST00000344458.6_1_2:220408458-220409493:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.8270263671875	2	499.825758	997.636963	-0.78252	-0.00039112	2.6271	0.0013131	1.8446	0.00092199	499.82709477009644	21.987	1.2319	21.785	21.421	22.653	-0.20199					69	25	5	0	0	0	1.0009	1	697	697		37.159	3.6435	1	4524900			21390	12550	14751	14784	24699	24699					0.1380502409080009
GRRRGRLN	8	Unmodified	_GRRRGRLN_					0	0	0		ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.8005676269531	2	492.79974	983.584928	-0.79003	-0.00038933	2.6013	0.0012819	1.8112	0.00089257	492.80102220493694	36.178	1.6179	36.178	35.687	37.305	0					102	43	5	0	0	0	0.93274	1	2883	2883		47.916	7.343	1	21568000			21391	9114	14752	14785	24700	24700					0.09247860677032804
GRRRKLYSA	9	Unmodified	_GRRRKLYSA_					0	0	0		ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8300170898438	2	553.830706	1105.64686	-0.078213	-4.3317E-05	-1.2618	-0.0006988	-1.34	-0.00074212	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.83071	1	11313	11313		37.159	5.6293	1	4896800			21392	6889	14753	14786	24701	24701					0.09826167305504896
GRRRKLYSA	9	Unmodified	_GRRRKLYSA_					0	0	0		ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8303833007812	2	553.830706	1105.64686	0.070138	3.8845E-05	-1.4657	-0.00081177	-1.3956	-0.00077293	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	0.85329	2	10974	10866;10974		35.618	1.4457	1	5986700			21393	6889	14753	14786	24702;24703	24703					0.09826167305504896
GRRRKQLPI	9	Unmodified	_GRRRKQLPI_					0	0	0			REV__ENST00000477151.1_1_1:153963457-153963690:+|nuORF	REV__ENST00000477151.1_1_1:153963457-153963690:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.3552856445312	2	562.362173	1122.70979	0.32223	0.00018121	-2.079	-0.0011692	-1.7568	-0.00098795	562.3609345313919	105.71	0.31506	105.55	105.46	105.77	-0.16133					24	12	3	0	0	0	0.92825	1	13167	13167		30.504	1.3541	1	118720	+		21394	33325	14754	14787	24704	24704					0.15334733093550312
GRRRKQLPI	9	Unmodified	_GRRRKQLPI_					0	0	0			REV__ENST00000477151.1_1_1:153963457-153963690:+|nuORF	REV__ENST00000477151.1_1_1:153963457-153963690:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	562.362173	1122.70979	-0.84941	-0.00047768	-0.34984	-0.00019674	-1.1993	-0.00067442	562.36176829605	105.62	0.38317	105.49	105.35	105.73	-0.13099	-0.028822	0.0011823	NaN	30.504	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165340	+		21395	33325	14754	14787							0.15334733093550312
GRRRKQLPI	9	Unmodified	_GRRRKQLPI_					0	0	0			REV__ENST00000477151.1_1_1:153963457-153963690:+|nuORF	REV__ENST00000477151.1_1_1:153963457-153963690:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	562.362173	1122.70979	0.32223	0.00018121	-2.079	-0.0011692	-1.7568	-0.00098795	562.3609345313919	105.71	0.31506	105.55	105.46	105.77	-0.16133	0.028822	-0.0007626	NaN	30.504	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118720	+		21396	33325	14754	14787							0.15334733093550312
GRRRRLGRW	9	Unmodified	_GRRRRLGRW_					0	0	0		ENSG00000181652|ENST00000639579|ATG9B;nc|ENSG00000181652|Q674R7-3|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	607.8472900390625	2	606.868489	1211.72242	-0.75475	-0.00045803	1.8971	0.0011513	1.1424	0.00069328	607.3715141034588	42.288	0.44381	42.288	42.053	42.497	0					19	12	2	0	0	0	0.024541	1	3866	3866		12.207	0.69583	1	147190			21397	9058	14755	14788	24705	24705					0.12503189276435478
GRRRRPAP	8	Unmodified	_GRRRRPAP_					0	0	0			REV__nc|ENSG00000005238|Q7L5A3-2|ATOSB	REV__nc|ENSG00000005238|Q7L5A3-2|ATOSB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7663879394531	2	483.296833	964.579114	0.039147	1.892E-05	1.7555	0.00084841	1.7946	0.00086733	483.2979578876361	47.032	0.65814	47.032	46.772	47.43	0					39	17	3	0	0	0	0.027866	1	4718	4718		20.482	0	1	739800	+		21398	19800	14756	14789	24706	24706					0.09540762165352135
GRRRRRKKWWQ	11	Unmodified	_GRRRRRKKWWQ_					0	0	0			REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF	REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.88787841796875	4	403.993455	1611.94471	1.645	0.00066458	4.2532	0.0017183	5.8982	0.0023829	403.99507684985304	17.887	0.29998	17.733	17.458	17.758	-0.15403					7	5	2	0	0	0	0.024873	1	212	212		3.2113	2.8399	1	13027	+		21399	30374	14757	14790	24707	24707					0.1632184362181306
GRRRTRRPP	9	Unmodified	_GRRRTRRPP_					0	0	0			REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.3525390625	2	576.352671	1150.69079	-0.65112	-0.00037528	2.0764	0.0011967	1.4253	0.00082146	576.3538902597289	44.679	0.83078	44.715	44.41	45.24	0.0369					78	23	6	0	0	0	0.5973	1	4220	4220		52.937	0	1	5408600	+		21400	31510	14758	14791	24708	24708					0.12147196522482773
GRRSENEF	8	Unmodified	_GRRSENEF_					0	0	0			REV__nc|ENSG00000163904|Q9HC62-2|SENP2	REV__nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2858581542969	2	497.73868	993.462806	-0.21216	-0.0001056	0.74796	0.00037229	0.5358	0.00026669	497.73896132101345	35.804	0.32964	35.592	35.354	35.684	-0.21246					14	8	2	0	0	0	0.027866	1	2731	2731		37.159	0	1	226330	+		21401	25655	14759	14792	24709	24709					-0.03418645915860452
GRRSRLIGF	9	Unmodified	_GRRSRLIGF_					0	0	0		ENST00000493382.5_1_3:145924377-145968784:-|nuORF;ENST00000460350.5_3_3:145924377-145968784:-|nuORF	ENST00000493382.5_1_3:145924377-145968784:-|nuORF	ENST00000493382.5_1_3:145924377-145968784:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2677001953125	2	531.319974	1060.6254	-0.74847	-0.00039768	0.0076522	4.0657E-06	-0.74082	-0.00039361	531.3199004219762	23.583	0.44987	23.403	23.157	23.607	-0.17989					15	10	2	0	0	0	0.024539	1	910	910		14.865	0	1	61224			21402	15501	14760	14793	24710	24710					0.09750782276819336
GRRSVAGGRAL	11	Unmodified	_GRRSVAGGRAL_					0	0	0		ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8090209960938	2	550.325788	1098.63702	-0.061741	-3.3977E-05	4.0668	0.0022381	4.005	0.0022041	550.3288271944675	55.866	0.58599	55.65	55.372	55.958	-0.21607					23	15	3	0	0	0	0.024745	1	6016	6016		33.922	0	1	225890			21403	10393	14761	14794	24711	24711					0.09164979300135201
GRRTILMFL	9	Unmodified	_GRRTILMFL_					0	0	0			REV__ENST00000372396.3_1_1:44157203-44157976:+|nuORF	REV__ENST00000372396.3_1_1:44157203-44157976:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8299560546875	2	553.828786	1105.64302	0.31465	0.00017426	1.8541	0.0010268	2.1687	0.0012011	553.8296747582538	87.083	2.4623	87.083	85.708	88.17	0					172	58	4	0	0	0	0.92825	1	10986	10986		30.504	2.6214	1	1317800	+		21404	31201	14762	14795	24712	24712					0.09442361487435846
GRRVFGIPV	9	Unmodified	_GRRVFGIPV_					0	0	0		ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	ENSG00000083223|ENST00000375963|TUT7	ENSG00000083223|ENST00000375963|TUT7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7929992675781	2	500.806168	999.597784	-0.46837	-0.00023456	-1.5929	-0.00079775	-2.0613	-0.0010323	500.8052811036795	52.037	0.40766	51.918	51.796	52.203	-0.11875					17	10	2	0	0	0	0.024487	1	5376	5376		24.203	0	1	148050			21405	1748	14763	14796	24713	24713					0.09796879016562343
GRRVIERNC	9	Unmodified	_GRRVIERNC_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.7984619140625	2	551.798549	1101.58254	2.8275	0.0015602	-3.4283	-0.0018917	-0.60079	-0.00033152	551.7967619970995	18.156	0.39271	18.156	17.94	18.333	0					22	7	4	0	0	0	0.94809	1	254	254		29.15	2.4566	1	214510	+		21406	28299	14764	14797	24714	24714					0.03581644157065966
GRRVKEKHL	9	Unmodified	_GRRVKEKHL_					0	0	0			REV__ENST00000520118.5_1_17:78397327-78397498:+|nuORF	REV__ENST00000520118.5_1_17:78397327-78397498:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.8453369140625	2	561.846356	1121.67816	-0.014521	-8.1585E-06	-0.95531	-0.00053674	-0.96983	-0.0005449	561.8456417925604	95.287	1.1033	95.291	95.001	96.104	0.0033722					76	25	4	0	0	0	0.67687	1	12090	12090		47.657	6.8792	1	1820900	+		21407	34288	14765	14798	24715	24715					0.12218740339585565
GRRWHRRPRRP	11	Unmodified	_GRRWHRRPRRP_					0	0	0		ENST00000527920.5_1_11:65339976-65340141:+|nuORF	ENST00000527920.5_1_11:65339976-65340141:+|nuORF	ENST00000527920.5_1_11:65339976-65340141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.6344909667969	3	510.634759	1528.88245	0.22157	0.00011314	0.41758	0.00021323	0.63915	0.00032637	510.6341188166971	103.2	1.4715	103.03	102.46	103.93	-0.17034					118	35	5	0	0	0	1.1135	1	12880	12880		6.3209	0	1	318810			21408	16165	14766	14799	24716	24716					0.13916117273447526
GRRWSTWV	8	Unmodified	_GRRWSTWV_					0	0	0			REV__ENST00000474661.5_1_13:37580081-37580135:+|nuORF	REV__ENST00000474661.5_1_13:37580081-37580135:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.3173217773438	2	524.277775	1046.541	-0.15465	-8.1079E-05	-0.55125	-0.00028901	-0.7059	-0.00037009	524.2773965889601	17.144	0.20154	16.936	16.812	17.013	-0.20777					6	3	2	0	0	0	0.027866	1	144	144		20.482	6.3447	1	45062	+		21409	33273	14767	14800	24717	24717					0.019588314600241574
GRSAARKRTSH	11	Unmodified	_GRSAARKRTSH_					0	0	0		ENST00000303657.9_1_19:5993631-5994159:-|nuORF	ENST00000303657.9_1_19:5993631-5994159:-|nuORF	ENST00000303657.9_1_19:5993631-5994159:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.2470703125	3	409.565676	1225.6752	1.1983	0.00049077	1.6434	0.0006731	2.8417	0.0011639	409.56636302775837	37.444	0.53962	37.444	37.195	37.735	0					40	14	4	0	0	0	0.024736	1	3084	3084		15.337	0	1	1555800			21410	11973	14768	14801	24718	24718					0.07138865214801626
GRSAVVSGSSR	11	Unmodified	_GRSAVVSGSSR_					0	0	0		ENSG00000186442|ENST00000417996|KRT3;CON__P12035;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546	ENSG00000186442|ENST00000417996|KRT3	ENSG00000186442|ENST00000417996|KRT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2677001953125	2	531.786161	1061.55777	-0.85761	-0.00045607	-4.1234	-0.0021928	-4.9811	-0.0026489	531.7843524990635	23.224	0.54984	23.044	22.651	23.201	-0.17989					16	11	2	0	0	0	0.024736	1	910	910		29.17	13.528	1	87519		+	21411	518	14769	14802	24719	24719					0.029452875553261038
GRSGAVALLP	10	Unmodified	_GRSGAVALLP_					0	0	0			REV__ENST00000525244.5_1_11:85956313-85988207:+|nuORF	REV__ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	470.782359	939.550165	-0.06592	-3.1034E-05	-0.29225	-0.00013759	-0.35817	-0.00016862	470.7820254485921	49.78	0.67004	49.854	49.503	50.173	0.074196					35	18	3	0	0	0	0.03519	1	5141	5141		40.778	15.328	1	971680	+		21412	20520	14770	14803	24720	24720					0.07797180025715988
GRSGPAQPS	9	Unmodified	_GRSGPAQPS_					0	0	0			REV__ENSG00000133135|ENST00000255499|RNF128	REV__ENSG00000133135|ENST00000255499|RNF128	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7845458984375	2	428.717216	855.419879	-0.76149	-0.00032646	-1.4241	-0.00061054	-2.1856	-0.000937	428.71738735569465	26.062	0.2216	25.898	25.758	25.98	-0.16331					8	6	2	0	0	0	0.024418	1	1281	1281		37.812	0.65241	1	78919	+		21413	23358	14771	14804	24721	24721					-0.013614159732924236
GRSGWRVLY	9	Unmodified	_GRSGWRVLY_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2703857421875	2	547.298707	1092.58286	-1.3182	-0.00072147	-1.7119	-0.0009369	-3.0301	-0.0016584	547.2974846488987	38.935	0.49031	38.77	38.59	39.081	-0.16458					35	13	4	0	0	0	0.024374	1	3253	3253		58.782	31.986	1	674390	+		21414	23460	14772	14805	24722	24722					0.04027387148562411
GRSGWRVLY	9	Unmodified	_GRSGWRVLY_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2703857421875	2	547.298707	1092.58286	-0.41054	-0.00022469	-2.2572	-0.0012354	-2.6678	-0.0014601	547.2971809294119	39.057	0.57026	38.832	38.562	39.132	-0.2257					35	15	3	0	0	0	0.024484	1	3251	3251		37.812	0	1	879880	+		21415	23460	14772	14805	24723	24723					0.04027387148562411
GRSHRSPL	8	Unmodified	_GRSHRSPL_					0	0	0		nc|ENSG00000180448|Q92619-2|ARHGAP45;ENSG00000180448|ENST00000313093|ARHGAP45	nc|ENSG00000180448|Q92619-2|ARHGAP45	nc|ENSG00000180448|Q92619-2|ARHGAP45	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.2556457519531	2	455.2543	908.494047	0.02153	9.8017E-06	2.3688	0.0010784	2.3903	0.0010882	455.2552316364505	56.869	0.92448	56.964	56.578	57.503	0.095306					59	25	3	0	0	0	0.52467	1	6344	6344		83.287	0	1	11949000			21416	8979	14773	14806	24724	24724					0.03613971908885105
GRSLEVLVL	9	Unmodified	_GRSLEVLVL_					0	0	0			REV__ENST00000437416.2_2_1:224803315-224803363:-|nuORF	REV__ENST00000437416.2_2_1:224803315-224803363:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.305908203125	2	493.305667	984.596781	1.0832	0.00053433	-1.5571	-0.00076813	-0.47394	-0.0002338	493.3048559255982	59.163	0.92426	59.163	58.787	59.711	0					76	24	4	0	0	0	0.77768	1	6764	6764		40.778	3.6191	1	8577700	+		21417	32480	14774	14807	24725	24725					0.10386619856978996
GRSLEVLVL	9	Unmodified	_GRSLEVLVL_					0	0	0			REV__ENST00000437416.2_2_1:224803315-224803363:-|nuORF	REV__ENST00000437416.2_2_1:224803315-224803363:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3056945800781	2	493.305667	984.596781	0.2699	0.00013314	-0.74403	-0.00036703	-0.47412	-0.00023389	493.30526676310683	59.031	0.87862	59.116	58.813	59.692	0.085686					71	23	4	0	0	0	0.6504	1	6659	6659		49.442	1.7842	1	8727300	+		21418	32480	14774	14807	24726	24726					0.10386619856978996
GRSMASIGPV	10	Unmodified	_GRSMASIGPV_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7568664550781	2	487.758027	973.5015	-0.98431	-0.00048011	-2.1873	-0.0010669	-3.1716	-0.001547	487.75676230420214	37.39	0.84174	37.17	36.846	37.688	-0.2195					47	21	3	0	0	0	0.71272	1	2995	2995		66.429	0	1	1867800	+		21419	37079	14775	14808	24727	24727					0.013689433943113727
GRSMGCLV	8	Carbamidomethyl (C),Oxidation (M)	_GRSM(Oxidation (M))GC(Carbamidomethyl (C))LV_	GRSMGC(1)LV	GRSM(1)GCLV	GRSMGC(58)LV	GRSM(58)GCLV	0	1	1		ENST00000369762.6_2_X:153664780-153664843:+|nuORF	ENST00000369762.6_2_X:153664780-153664843:+|nuORF	ENST00000369762.6_2_X:153664780-153664843:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.208251953125	2	448.209855	894.405157	-0.64959	-0.00029115	-2.9225	-0.0013099	-3.5721	-0.0016011	448.20838313916954	21.692	2.373	21.48	20.773	23.146	-0.2128					108	49	3	0	0	0	0.81662	1	676	676		57.811	8.6005	1	449140			21420	12936	14776	14809	24728	24728	174	481			-0.04626947437293438
GRSMPKKSP	9	Unmodified	_GRSMPKKSP_					0	0	0			REV__nc|ENSG00000144724|P23470-2|PTPRG	REV__nc|ENSG00000144724|P23470-2|PTPRG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7946472167969	2	494.273844	986.533135	0.020772	1.0267E-05	3.7116	0.0018346	3.7324	0.0018448	494.2746193205366	96.028	0.29698	96.028	95.778	96.075	0					10	6	2	0	0	0	0.024397	1	12209	12209		47.657	17.34	1	38769	+		21421	24354	14777	14810	24729	24729					0.039329361482487
GRSMSWTSVI	10	Oxidation (M)	_GRSM(Oxidation (M))SWTSVI_		GRSM(1)SWTSVI		GRSM(53)SWTSVI	0	0	1			REV__ENSG00000143473|ENST00000271751|KCNH1	REV__ENSG00000143473|ENST00000271751|KCNH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.277099609375	2	570.279323	1138.54409	0.071144	4.0572E-05	-3.5964	-0.0020509	-3.5252	-0.0020104	570.2770157663105	106.74	0.67593	106.62	106.43	107.1	-0.1238					32	21	2	0	0	0	0.91678	1	13265	13265		52.937	6.9645	1	267710	+		21422	24252	14778	14811	24730	24730		720			-0.019637062681340467
GRSPLIHAV	9	Unmodified	_GRSPLIHAV_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3;BCL3|p.N286D|1|0.07|ENSG00000069399|chr19:44757688-44757688|A/G|missense_variant	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.2825927734375	2	475.282526	948.550499	0.24681	0.0001173	-0.18571	-8.8265E-05	0.061098	2.9039E-05	475.28216003484124	34.99	0.7086	34.774	34.467	35.176	-0.21555					53	17	4	0	0	0	0.25032	1	2628	2628		82.305	0	1	2566400			21423	13698	14779	14812	24731	24731					0.07416599745567964
GRSPLIHAV	9	Unmodified	_GRSPLIHAV_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3;BCL3|p.N286D|1|0.07|ENSG00000069399|chr19:44757688-44757688|A/G|missense_variant	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.282526	948.550499	0.32383	0.00015391	-1.3508	-0.00064199	-1.0269	-0.00048808	475.28156190429877	35.084	0.47992	35.084	34.826	35.306	0	0.20792	-0.0014022	NaN	82.305	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174930			21424	13698	14779	14812							0.07416599745567964
GRSPLIHAV	9	Unmodified	_GRSPLIHAV_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3;BCL3|p.N286D|1|0.07|ENSG00000069399|chr19:44757688-44757688|A/G|missense_variant	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.282526	948.550499	-0.27475	-0.00013058	-0.19261	-9.1546E-05	-0.46736	-0.00022213	475.28191986629423	34.869	0.49211	34.847	34.593	35.085	-0.021763	-0.028241	-0.00030135	NaN	82.305	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193580			21425	13698	14779	14812							0.07416599745567964
GRSPLIHAV	9	Unmodified	_GRSPLIHAV_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3;BCL3|p.N286D|1|0.07|ENSG00000069399|chr19:44757688-44757688|A/G|missense_variant	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.282526	948.550499	-0.23577	-0.00011206	-0.12791	-6.0796E-05	-0.36369	-0.00017285	475.2822277744212	34.976	0.47258	35.022	34.834	35.307	0.046181	0.14629	-0.00023985	NaN	82.305	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152960			21426	13698	14779	14812							0.07416599745567964
GRSQRQLQ	8	Unmodified	_GRSQRQLQ_					0	0	0		ENST00000487852.1_1_13:33590814-33628082:+|nuORF	ENST00000487852.1_1_13:33590814-33628082:+|nuORF	ENST00000487852.1_1_13:33590814-33628082:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.74371337890625	2	486.770314	971.526075	-0.53692	-0.00026136	-3.3755	-0.0016431	-3.9124	-0.0019044	486.7684372578262	29.974	0.63354	29.73	29.358	29.991	-0.24415					18	14	2	0	0	0	0.027866	1	1854	1854		47.657	14.845	1	70780			21427	15376	14780	14813	24732	24732					0.03917339592032931
GRSSGRYASLP	11	Unmodified	_GRSSGRYASLP_					0	0	0		ENST00000436881.2_1_9:139742359-139742653:+|nuORF	ENST00000436881.2_1_9:139742359-139742653:+|nuORF	ENST00000436881.2_1_9:139742359-139742653:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8020629882812	2	575.801811	1149.58907	0.13978	8.0484E-05	-0.67792	-0.00039035	-0.53814	-0.00030986	575.8013636895595	108.38	0.36011	108.38	108.16	108.52	0					41	17	3	0	0	0	1.0344	1	13886	13886		29.17	0	1	6708400			21428	14285	14781	14814	24733	24733					0.02025860589401418
GRSTLRNNQL	10	Unmodified	_GRSTLRNNQL_					0	0	0			REV__ENSG00000174348|ENST00000312553|PODN	REV__ENSG00000174348|ENST00000312553|PODN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7625122070312	2	579.820535	1157.62652	-0.64629	-0.00037473	-2.2403	-0.001299	-2.8866	-0.0016737	579.8190812071604	39.884	0.45914	39.653	39.352	39.811	-0.23021					19	11	2	0	0	0	0.03519	1	3376	3376		25.574	4.6271	1	191910	+		21429	26856	14782	14815	24734	24734					0.05400951855017411
GRTEEYRR	8	Unmodified	_GRTEEYRR_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7744750976562	2	533.773054	1065.53155	-0.64929	-0.00034657	3.0927	0.0016508	2.4434	0.0013042	533.7746059894222	50.512	1.3612	50.593	50.243	51.604	0.08099					106	38	4	0	0	0	0.71833	1	5225	5225		65.803	2.4969	1	11721000			21430	18053	14783	14816	24735	24735					0.0014101838385158771
GRTITAVLTT	10	Unmodified	_GRTITAVLTT_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;LPCAT3|p.Q363Sfs*87|1|0.1|ENSG00000111684|chr12:6977700-6977701|-/G|frameshift_variant;ENST00000545459.5_1_12:7090966-7091923:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.8184814453125	2	516.806031	1031.59751	0.16898	8.7332E-05	2.9316	0.0015151	3.1006	0.0016024	516.8074120120974	67.81	0.45125	67.576	67.345	67.797	-0.23376					15	10	2	0	0	0	0.03519	1	7787	7787		8.6937	0	1	304930			21431	3137	14784	14817	24736	24736					0.08297414506023415
GRTLRVRAR	9	Unmodified	_GRTLRVRAR_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8350830078125	2	542.844148	1083.67374	-1.6885	-0.00091662	3.9633	0.0021515	2.2748	0.0012348	542.846096525977	51.354	0.52569	51.441	51.189	51.715	0.087006					20	14	2	0	0	0	0.024294	1	5407	5407		37.159	0	1	581900			21432	651	14785	14818	24737	24737					0.13525275916686041
GRTNFDNDI	9	Unmodified	_GRTNFDNDI_					0	0	0		ENSG00000182326|ENST00000360817|C1S;ENST00000443875.5_1_12:7174318-7177952:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7949829101562	2	526.243795	1050.47304	-0.33991	-0.00017887	3.9519	0.0020797	3.612	0.0019008	526.2457682687187	36.295	0.88118	36.333	35.962	36.843	0.038044					55	24	3	0	0	0	0.024477	1	2772	2772		35.618	6.4687	1	353100			21433	9127	14786	14819	24738	24738					-0.05018082981291627
GRTPLHLAT	9	Unmodified	_GRTPLHLAT_					0	0	0		ANKRD13B|p.T432Sfs*64|1|0.06|ENSG00000198720|chr17:29612426-29612427|-/CGCCCGCATCT|frameshift_variant;ENST00000487527.5_1_17:27916841-27940597:+|nuORF;ENSG00000198720|ENST00000394859|ANKRD13B	ANKRD13B|p.T432Sfs*64|1|0.06|ENSG00000198720|chr17:29612426-29612427|-/CGCCCGCATCT|frameshift_variant	ANKRD13B|p.T432Sfs*64|1|0.06|ENSG00000198720|chr17:29612426-29612427|-/CGCCCGCATCT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2847900390625	2	483.279983	964.545414	1.0669	0.0005156	-1.9556	-0.00094511	-0.88874	-0.00042951	483.2788336978347	54.795	0.25365	54.589	54.468	54.722	-0.20613					15	6	3	0	0	0	0.024344	1	5817	5817		30.318	6.115	1	482090			21434	90	14787	14820	24739	24739					0.06172295882936396
GRTTPTQLW	9	Unmodified	_GRTTPTQLW_					0	0	0		ENST00000493197.5_1_5:177651486-177651668:-|nuORF	ENST00000493197.5_1_5:177651486-177651668:-|nuORF	ENST00000493197.5_1_5:177651486-177651668:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.281982421875	2	530.282723	1058.55089	-1.0052	-0.00053302	0.5264	0.00027914	-0.47877	-0.00025388	530.2831082811714	56.126	1.1877	55.91	55.168	56.356	-0.21551					74	31	5	0	0	0	0.42604	1	6045	6045		64.207	0	1	3022600			21435	15497	14788	14821	24740	24740					0.023959746747550525
GRVAHRVGTR	10	Unmodified	_GRVAHRVGTR_					0	0	0			REV__ENSG00000118007|ENST00000383202|STAG1;REV__NCK1-STAG1|1|fusion	REV__NCK1-STAG1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.7991333007812	2	554.825955	1107.63736	0.49133	0.0002726	2.4995	0.0013868	2.9909	0.0016594	554.8270697709348	40.806	0.53841	40.683	40.441	40.98	-0.12317					25	14	2	0	0	0	0.03519	1	3639	3639		41.427	12.257	1	404420	+		21436	22382;37265	14789	14822	24741	24741					0.08784399019987177
GRVCIVPI	8	Unmodified	_GRVCIVPI_					0	0	0		ENST00000417868.1_1_1:153824935-153825106:-|nuORF	ENST00000417868.1_1_1:153824935-153825106:-|nuORF	ENST00000417868.1_1_1:153824935-153825106:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.78466796875	2	428.757298	855.500044	-0.28357	-0.00012158	-0.45009	-0.00019298	-0.73365	-0.00031456	428.7575986621564	26.169	0.41016	25.933	25.72	26.13	-0.23603					22	11	3	0	0	0	0.027866	1	1318	1318		20.482	5.8177	1	439850			21437	13923	14790	14823	24742	24742					0.06651354096197792
GRVERLNKIK	10	Unmodified	_GRVERLNKIK_					0	0	0			REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.92291259765625	3	404.922689	1211.74624	-0.99259	-0.00040192	0.60463	0.00024483	-0.38797	-0.0001571	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.1314	1	1413	1413		27.047	0	1	42819000	+		21438	23769	14791	14824	24743	24743					0.14883565199579607
GRVFSSAEAL	10	Unmodified	_GRVFSSAEAL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.76953125	2	518.774731	1035.53491	-0.50714	-0.00026309	3.7033	0.0019212	3.1962	0.0016581	518.7764177338909	21.534	1.9064	21.444	20.863	22.769	-0.090094					79	39	3	0	0	0	0.03519	1	761	761		24.519	2.5593	1	197810			21439	3341	14792	14825	24744	24744					0.018562684378366612
GRVGRQLH	8	Unmodified	_GRVGRQLH_					0	0	0			REV__ENSG00000186188|ENST00000371481|FFAR4	REV__ENSG00000186188|ENST00000371481|FFAR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7825012207031	2	461.770117	921.525681	-0.56764	-0.00026212	0.50469	0.00023305	-0.062948	-2.9067E-05	461.77017455892076	27.823	0.30993	27.823	27.653	27.963	0					12	7	2	0	0	0	0.027866	1	1538	1538		25.45	1.2474	1	55740	+		21440	27832	14793	14826	24745	24745					0.0617796466284517
GRVGVSSAP	9	Unmodified	_GRVGVSSAP_					0	0	0			REV__ENST00000419490.5_1_1:21112779-21113076:-|nuORF	REV__ENST00000419490.5_1_1:21112779-21113076:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.25872802734375	2	415.229959	828.445365	0.1412	5.8631E-05	-1.5951	-0.00066231	-1.4539	-0.00060368	415.2289532228812	38.828	1.1498	38.602	38.246	39.395	-0.2257					34	30	2	0	0	0	0.024021	1	3213	3213		40.778	0	1	81763	+		21441	32141	14794	14827	24746	24746					0.02428058549128309
GRVHLVKEKTA	11	Unmodified	_GRVHLVKEKTA_					0	0	0		nc|ENSG00000293442|O43930|PRKY;ENST00000528056.5_1_Y:7142320-7235412:+|nuORF;ENSG00000183943|ENST00000262848|PRKX	nc|ENSG00000293442|O43930|PRKY	nc|ENSG00000293442|O43930|PRKY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8705444335938	2	619.372404	1236.73025	0.10969	6.7938E-05	-2.6718	-0.0016548	-2.5621	-0.0015869	619.3707577954212	100.03	0.81097	100.04	99.701	100.51	0.010109					50	20	3	0	0	0	1.0521	1	12753	12753		24.519	1.4767	1	871680			21442	9293	14795	14828	24747	24747					0.12135858962687962
GRVHLVKEKTA	11	Unmodified	_GRVHLVKEKTA_					0	0	0		nc|ENSG00000293442|O43930|PRKY;ENST00000528056.5_1_Y:7142320-7235412:+|nuORF;ENSG00000183943|ENST00000262848|PRKX	nc|ENSG00000293442|O43930|PRKY	nc|ENSG00000293442|O43930|PRKY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.3677368164062	2	619.372404	1236.73025	-0.36932	-0.00022875	-1.9375	-0.0012	-2.3068	-0.0014288	619.3711950685711	100.23	0.72057	100.22	99.857	100.58	-0.0050812					48	19	3	0	0	0	1.0521	1	12736	12736		24.519	0.99649	1	919110			21443	9293	14795	14828	24748	24748					0.12135858962687962
GRVHLVKEKTA	11	Unmodified	_GRVHLVKEKTA_					0	0	0		nc|ENSG00000293442|O43930|PRKY;ENST00000528056.5_1_Y:7142320-7235412:+|nuORF;ENSG00000183943|ENST00000262848|PRKX	nc|ENSG00000293442|O43930|PRKY	nc|ENSG00000293442|O43930|PRKY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.3712768554688	2	619.372404	1236.73025	0.077472	4.7984E-05	-2.4072	-0.001491	-2.3298	-0.001443	619.3708656217665	100.27	0.64758	100.1	99.921	100.57	-0.17088					49	19	3	0	0	0	1.0292	1	12437	12437		30.318	9.3708	1	1194100			21444	9293	14795	14828	24749	24749					0.12135858962687962
GRVKADPGPI	10	Unmodified	_GRVKADPGPI_					0	0	0			REV__ENSG00000172922|ENST00000308418|RNASEH2C	REV__ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.8241882324219	2	505.293091	1008.57163	-0.63431	-0.00032051	0.3282	0.00016584	-0.30611	-0.00015468	505.2931293980125	43.366	0.89729	43.227	42.991	43.888	-0.13929					35	24	2	0	0	0	0.03519	1	4007	4007		31.53	5.9558	1	1056000	+		21445	26722	14796	14829	24750	24750					0.06768565054414921
GRVKGVTI	8	Unmodified	_GRVKGVTI_					0	0	0		ENSG00000127337|ENST00000247843|YEATS4;ENST00000552949.1_1_12:69753653-69756720:+|nuORF	ENSG00000127337|ENST00000247843|YEATS4	ENSG00000127337|ENST00000247843|YEATS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.2329406738281	2	415.266345	828.518136	0.24454	0.00010155	-0.67598	-0.00028071	-0.43144	-0.00017916	415.2661456487805	23.929	0.42912	23.929	23.737	24.166	0					17	9	3	0	0	0	0.027866	1	975	975		26.796	0	1	106560			21446	4236	14797	14830	24751	24751					0.09701812342564153
GRVKVRDM	8	Unmodified	_GRVKVRDM_					0	0	0			REV__ENST00000590064.1_1_19:3754078-3754498:-|nuORF	REV__ENST00000590064.1_1_19:3754078-3754498:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.8009338378906	2	480.774011	959.533469	0.41202	0.00019809	3.3097	0.0015912	3.7217	0.0017893	480.7765680187926	94.207	0.35487	94.207	94.007	94.362	0					10	8	2	0	0	0	0.027866	1	11967	11967		30.504	0	1	133940	+		21447	35690	14798	14831	24752	24752					0.05208355868103354
GRVLLAPRE	9	Unmodified	_GRVLLAPRE_					0	0	0		ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.80889892578125	2	505.808908	1009.60326	-0.3876	-0.00019605	0.65889	0.00033327	0.2713	0.00013722	505.8090819599572	57.854	0.65228	57.676	57.242	57.895	-0.17776					33	16	3	0	0	0	0.64897	1	6335	6335		49.536	10.283	1	1888000			21448	15720	14799	14832	24753	24753					0.09884557808356931
GRVLLVLMF	9	Unmodified	_GRVLLVLMF_					0	0	0		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8241577148438	2	524.322805	1046.63106	-0.054333	-2.8488E-05	0.2636	0.00013821	0.20927	0.00010972	524.3228719836875	49.726	0.9441	49.621	48.95	49.894	-0.10558					54	24	4	0	0	0	0.024466	1	5053	5053		18.324	3.6603	1	2921000			21449	6014	14800	14833	24754	24754					0.10960744744238582
GRVNCWIN	8	Unmodified	_GRVNCWIN_					0	0	0			REV__ENSG00000166148|ENST00000299178|AVPR1A	REV__ENSG00000166148|ENST00000299178|AVPR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.3135070800781	2	481.237261	960.45997	0.3262	0.00015698	-0.32594	-0.00015686	0.00025949	1.2488E-07	481.23705588615616	68.986	0.15714	68.693	68.556	68.714	-0.29267					5	3	2	0	0	0	0.027866	1	8246	8246		31.955	1.4512	1	40615	+		21450	25979	14801	14834	24755	24755					-0.021841925743842694
GRVPGALGAP	10	Unmodified	_GRVPGALGAP_					0	0	0			REV__SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	REV__SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2353210449219	2	447.761426	893.5083	-0.70317	-0.00031485	-0.17562	-7.8636E-05	-0.87879	-0.00039349	447.7616055540711	37.733	0.70409	37.65	37.144	37.848	-0.082512					52	19	4	0	0	0	0.03519	1	3073	3073		25.574	1.3713	1	421350	+		21451	22848	14802	14835	24756	24756					0.057286243371777346
GRVPTVRI	8	Unmodified	_GRVPTVRI_					0	0	0			REV__ENSG00000173456|ENST00000311413|RNF26	REV__ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.28466796875	2	449.285069	896.555585	-0.47849	-0.00021498	0.53072	0.00023844	0.052228	2.3465E-05	449.2852048956923	34.728	1.0612	34.541	34.199	35.26	-0.18675					62	26	4	0	0	0	0.83003	1	2572	2572		56.721	3.3696	1	2807500	+		21452	26774	14803	14836	24757	24757					0.10316903608190842
GRVRALVVLA	10	Unmodified	_GRVRALVVLA_					0	0	0		ENST00000509792.1_1_4:176987041-176989385:+|nuORF	ENST00000509792.1_1_4:176987041-176989385:+|nuORF	ENST00000509792.1_1_4:176987041-176989385:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2866821289062	2	527.3482	1052.68185	-0.69507	-0.00036654	0.17367	9.1585E-05	-0.5214	-0.00027496	527.3482312442218	30.732	0.37313	30.742	30.539	30.912	0.0097809					14	8	2	0	0	0	0.03519	1	1954	1954		16.473	4.2663	1	64572			21453	15812	14804	14837	24758	24758					0.1576141011346408
GRVRFLIY	8	Unmodified	_GRVRFLIY_					0	0	0			REV__ENST00000524549.1_1_11:9597166-9597247:+|nuORF	REV__ENST00000524549.1_1_11:9597166-9597247:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2939453125	2	512.308544	1022.60253	-0.53604	-0.00027462	-1.0014	-0.00051302	-1.5374	-0.00078764	512.3079062759748	65.5	0.49273	65.249	64.986	65.479	-0.25112					18	11	2	0	0	0	0.027866	1	7482	7482		29.842	15.177	1	225170	+		21454	34387	14805	14838	24759	24759					0.09213763159311839
GRVSLEVVL	9	Unmodified	_GRVSLEVVL_					0	0	0			REV__ENST00000263035.8_1_10:12143070-12143145:+|nuORF	REV__ENST00000263035.8_1_10:12143070-12143145:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.81842041015625	2	486.297842	970.581131	-0.44671	-0.00021724	4.1104	0.0019989	3.6637	0.0017816	486.2997513361825	65.664	0.60493	65.702	65.523	66.128	0.037384					37	15	3	0	0	0	0.024506	1	7772	7772		16.473	0	1	654740	+		21455	29677	14806	14839	24760	24760					0.09466333339935318
GRWALIGL	8	Unmodified	_GRWALIGL_					0	0	0			REV__ENST00000318388.10_1_18:9102651-9102726:+|nuORF	REV__ENST00000318388.10_1_18:9102651-9102726:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2663879394531	2	443.268887	884.523222	-0.72455	-0.00032117	-3.5228	-0.0015615	-4.2473	-0.0018827	443.26723674965314	85.728	1.1392	85.752	85.367	86.506	0.023666					72	26	4	0	0	0	1.0133	1	10670	10670		35.201	5.3592	1	1182500	+		21456	30306	14807	14840	24761	24761					0.07634116205190367
GRWRLSLE	8	Unmodified	_GRWRLSLE_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7830505371094	2	508.785433	1015.55631	-0.50192	-0.00025537	-0.37062	-0.00018857	-0.87254	-0.00044394	508.785173204544	56.594	0.83431	56.594	56.314	57.148	0					54	23	4	0	0	0	0.87148	1	6323	6323		53.351	0	1	2408100			21457	2577	14808	14841	24762	24762					0.04915698257218537
GRYEDHGDFQ	10	Unmodified	_GRYEDHGDFQ_					0	0	0		ENST00000368102.5_1_1:159804969-159805389:-|nuORF	ENST00000368102.5_1_1:159804969-159805389:-|nuORF	ENST00000368102.5_1_1:159804969-159805389:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	408.5065002441406	3	408.507381	1222.50031	0.56185	0.00022952	-2.8144	-0.0011497	-2.2525	-0.00092017	408.506169400234	19.467	0.7867	19.306	19.084	19.871	-0.16079					33	15	3	0	0	0	1.1211	1	438	438		21.686	0.73882	1	519200			21458	12882	14809	14842	24763	24763					-0.10203599440910693
GRYGRLRVT	9	Unmodified	_GRYGRLRVT_					0	0	0			REV__ENST00000411689.6_1_6:46620850-46623676:+|nuORF	REV__ENST00000411689.6_1_6:46620850-46623676:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7787475585938	2	539.317432	1076.62031	-0.8201	-0.0004423	2.4575	0.0013254	1.6374	0.00088308	539.3187177740583	62.109	0.58547	61.882	61.534	62.119	-0.22663					36	15	3	0	0	0	0.024405	1	7202	7202		27.882	2.4321	1	1303400	+		21459	31987	14810	14843	24764	24764					0.08506478414165031
GRYGRLRVT	9	Unmodified	_GRYGRLRVT_					0	0	0			REV__ENST00000411689.6_1_6:46620850-46623676:+|nuORF	REV__ENST00000411689.6_1_6:46620850-46623676:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.317432	1076.62031	-1.2024	-0.00064845	2.7377	0.0014765	1.5354	0.00082804	539.3189786603679	61.912	0.58779	61.912	61.529	62.117	0	0.026706	7.718E-05	NaN	20.947	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481200	+		21460	31987	14810	14843							0.08506478414165031
GRYGRLRVT	9	Unmodified	_GRYGRLRVT_					0	0	0			REV__ENST00000411689.6_1_6:46620850-46623676:+|nuORF	REV__ENST00000411689.6_1_6:46620850-46623676:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.317432	1076.62031	-1.284	-0.0006925	2.8384	0.0015308	1.5543	0.00083828	539.3189791397664	61.799	0.54518	61.862	61.542	62.087	0.062763	-0.023454	0.00018576	NaN	20.947	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525300	+		21461	31987	14810	14843							0.08506478414165031
GRYHMSAGSMM	11	Unmodified	_GRYHMSAGSMM_					0	0	0		MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|66|3|anti-sense	MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|66|3|anti-sense	MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|66|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	614.3223266601562	2	614.25701	1226.49947	-1.7183	-0.0010555	-1.8138	-0.0011141	-3.5321	-0.0021696	614.255551654828	68.64	0.32628	68.378	68.181	68.507	-0.26166					11	7	2	0	0	0	0.024736	1	7928	7928		29.17	4.0441	1	87967			21462	17965	14811	14844	24765	24765					-0.1047217667746736
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.75091552734375	2	503.751256	1005.48796	-0.40191	-0.00020246	-0.0052797	-2.6597E-06	-0.40719	-0.00020512	503.75119754562144	34.023	1.4984	34.023	33.287	34.785	0					112	39	5	0	0	0	0.079716	4	2522	2484;2496;2508;2522		117.81	43.836	1	4453900			21463	7801	14812	14845	24766;24767;24768;24769	24769					-0.014565911132876863
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7511901855469	2	503.751256	1005.48796	-0.42819	-0.0002157	-0.085479	-4.306E-05	-0.51366	-0.00025876	503.75117260548325	33.779	1.5079	33.775	33.143	34.651	-0.0045624					107	39	4	0	0	0	0.22902	4	2423	2423;2444;2457;2468		85.161	7.8432	1	4863200			21464	7801	14812	14845	24770;24771;24772;24773	24770					-0.014565911132876863
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.75103759765625	2	503.751256	1005.48796	0.010616	5.3479E-06	-0.45895	-0.0002312	-0.44834	-0.00022585	503.7509773970321	33.723	1.5534	33.779	33.176	34.729	0.056568					104	39	5	0	0	0	0.048057	4	2387	2387;2399;2411;2423		129.42	47.116	1	4402000			21465	7801	14812	14845	24774;24775;24776;24777	24774					-0.014565911132876863
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7509765625	2	503.751256	1005.48796	-0.034855	-1.7558E-05	-0.35846	-0.00018057	-0.39331	-0.00019813	503.7510661414255	34.015	1.1796	33.791	33.2	34.379	-0.22412					97	29	5	0	0	0	0.094442	5	2464	2442;2452;2464;2476;2489		112.41	30.106	1	9314000			21466	7801	14812	14845	24778;24779;24780;24781;24782	24780					-0.014565911132876863
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7509765625	2	503.751256	1005.48796	-0.40463	-0.00020383	0.19018	9.5805E-05	-0.21445	-0.00010803	503.75132876540437	33.907	1.2345	33.705	33.054	34.288	-0.20204					92	31	4	0	0	0	0.079716	4	2439	2429;2439;2451;2463		117.81	27.034	1	10064000			21467	7801	14812	14845	24783;24784;24785;24786	24784					-0.014565911132876863
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7508544921875	2	503.751256	1005.48796	-1.4696	-0.00074032	1.1679	0.00058831	-0.30174	-0.000152	503.7518470905498	33.896	1.1077	33.72	33.185	34.293	-0.17557					87	27	4	0	0	0	0.094442	6	2399	2399;2410;2421;2433;2458;2470		112.41	33.708	1	9550700			21468	7801	14812	14845	24787;24788;24789;24790;24791;24792	24787					-0.014565911132876863
GSAAAPRLVTV	11	Unmodified	_GSAAAPRLVTV_					0	0	0			REV__ENST00000586409.5_1_17:74391712-74392192:-|nuORF	REV__ENST00000586409.5_1_17:74391712-74392192:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3053588867188	2	521.306198	1040.59784	0.28645	0.00014933	-1.932	-0.0010072	-1.6456	-0.00085785	521.3054800950314	47.297	1.7757	47.144	46.622	48.398	-0.15301					120	50	5	0	0	0	0.73399	1	4747	4747		61.691	1.573	1	122020000	+		21469	35599	14813	14846	24793	24793					0.07916834225898128
GSADFTVKVW	10	Unmodified	_GSADFTVKVW_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2;nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENST00000493559.1_1_9:123515564-123538496:-|nuORF	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.2847290039062	2	555.284931	1108.55531	-0.31369	-0.00017419	-0.054826	-3.0444E-05	-0.36852	-0.00020463	555.2847604904294	66.462	0.46326	66.214	65.94	66.404	-0.24839					37	11	4	0	0	0	0.0081025	1	7618	7618		172.25	76.058	1	1799200			21470	3734	14814	14847	24794	24794					0.005374390976612631
GSADFTVKVW	10	Unmodified	_GSADFTVKVW_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2;nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENST00000493559.1_1_9:123515564-123538496:-|nuORF	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.2846069335938	2	555.284931	1108.55531	-0.60201	-0.00033429	1.0099	0.0005608	0.40792	0.00022651	555.2849336195571	66.448	0.61383	66.224	65.864	66.478	-0.22373					46	15	4	0	0	0	0.0081025	1	7627	7627		172.25	92.798	1	1792200			21471	3734	14814	14847	24795	24795					0.005374390976612631
GSADFTVKVW	10	Unmodified	_GSADFTVKVW_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2;nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENST00000493559.1_1_9:123515564-123538496:-|nuORF	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2846069335938	2	555.284931	1108.55531	-0.5686	-0.00031574	0.77168	0.0004285	0.20308	0.00011277	555.2849276274883	66.426	0.49146	66.181	65.931	66.422	-0.24517					55	12	6	0	0	0	0.18296	1	7608	7608		123.21	48.165	1	1981200			21472	3734	14814	14847	24796	24796					0.005374390976612631
GSADKTVALW	10	Unmodified	_GSADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2781372070312	2	524.277106	1046.53966	-0.36899	-0.00019345	0.44765	0.00023469	0.078655	4.1237E-05	524.2772647104605	56.631	0.82194	56.463	56.001	56.823	-0.1672					59	20	4	0	0	0	0.37307	4	6143	6121;6131;6143;6155		101.46	29.582	1	7164800			21473	6950	14815	14848	24797;24798;24799;24800	24799					0.01825152580613576
GSADKTVALW	10	Unmodified	_GSADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.276611328125	2	524.277106	1046.53966	0.28477	0.0001493	-0.27465	-0.00014399	0.010122	5.3066E-06	524.2768739853168	56.701	0.72343	56.499	56.132	56.855	-0.20209					55	18	4	0	0	0	0.27169	4	6132	6132;6142;6154;6167		112.11	59.171	1	7722600			21474	6950	14815	14848	24801;24802;24803;24804	24801					0.01825152580613576
GSADKTVALW	10	Unmodified	_GSADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.27734375	2	524.277106	1046.53966	0.42035	0.00022038	-0.47321	-0.00024809	-0.052861	-2.7714E-05	524.2767562562136	56.71	0.73791	56.485	56.149	56.887	-0.2248					56	18	4	0	0	0	0.27169	3	6136	6124;6136;6161		112.11	42.48	1	7007200			21475	6950	14815	14848	24805;24806;24807	24806					0.01825152580613576
GSADKTVALW	10	Unmodified	_GSADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.277106	1046.53966	-0.8275	-0.00043384	-0.85771	-0.00044968	-1.6852	-0.00088352	524.2764743615726	56.087	0.17271	56.087	56.035	56.207	0	-0.29616	-0.00082203	NaN	112.11	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186320			21476	6950	14815	14848							0.01825152580613576
GSALRWSEK	9	Unmodified	_GSALRWSEK_					0	0	0		ENST00000580219.5_2_17:46198873-46198999:+|nuORF	ENST00000580219.5_2_17:46198873-46198999:+|nuORF	ENST00000580219.5_2_17:46198873-46198999:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2745971679688	2	517.274898	1032.53524	-0.6858	-0.00035475	-0.61572	-0.0003185	-1.3015	-0.00067325	517.2745465631918	45.262	1.5497	45.262	44.862	46.412	0					140	44	6	0	0	0	0.23085	1	4349	4349		84.916	2.165	1	35559000			21477	17146	14816	14849	24808	24808					0.02027688157704688
GSAQPARETV	10	Unmodified	_GSAQPARETV_					0	0	0		ENST00000591893.1_1_17:73781488-73781794:-|nuORF	ENST00000591893.1_1_17:73781488-73781794:-|nuORF	ENST00000591893.1_1_17:73781488-73781794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2740173339844	2	508.261988	1014.50942	-0.43164	-0.00021939	4.0938	0.0020807	3.6622	0.0018614	508.2640269155506	67.198	0.85052	67.198	66.755	67.606	0					45	20	4	0	0	0	0.03519	1	8005	8005		36.447	3.6343	1	1343500			21478	17364	14817	14850	24809	24809					0.0027479391542328813
GSASVNSRW	9	Unmodified	_GSASVNSRW_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2352600097656	2	482.235773	962.456993	0.30782	0.00014844	-0.049147	-2.37E-05	0.25867	0.00012474	482.235617365375	34.317	0.85915	34.093	33.762	34.621	-0.22412					60	21	4	0	0	0	0.014918	3	2509	2509;2519;2532		162.25	55.837	1	6083400			21479	5680	14818	14851	24810;24811;24812	24810					-0.02573744427525071
GSASVNSRW	9	Unmodified	_GSASVNSRW_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.23583984375	2	482.235773	962.456993	-0.30216	-0.00014571	0.45909	0.00022139	0.15693	7.5678E-05	482.23592154714504	34.156	1.0632	33.949	33.627	34.69	-0.20696					77	26	4	0	0	0	0.013924	3	2488	2478;2488;2500		167.23	65.628	1	7169300			21480	5680	14818	14851	24813;24814;24815	24814					-0.02573744427525071
GSASVNSRW	9	Unmodified	_GSASVNSRW_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.23590087890625	2	482.235773	962.456993	-0.72157	-0.00034797	0.41373	0.00019952	-0.30784	-0.00014845	482.235969089164	34.193	0.82863	34.018	33.701	34.53	-0.17557					68	20	4	0	0	0	0.015713	3	2482	2472;2482;2493		195.06	83.415	1	6078700			21481	5680	14818	14851	24816;24817;24818	24817					-0.02573744427525071
GSATVILGVT	10	Unmodified	_GSATVILGVT_					0	0	0		ENSG00000205085|ENST00000682356|GARIN1A;nc|ENSG00000205085|Q6NXP2|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2849426269531	2	459.26875	916.522947	-0.34097	-0.0001566	3.0699	0.0014099	2.7289	0.0012533	459.2691090782921	56.034	1.467	56.132	55.219	56.686	0.097893					53	39	2	0	0	0	0.03519	1	6200	6200		40.778	7.9657	1	531830			21482	10403	14819	14852	24819	24819					0.06134651694674176
GSAVHTKEK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GSAVHTKEK_					1	0	0			REV__ENST00000536388.5_1_12:6559784-6560133:-|nuORF	REV__ENST00000536388.5_1_12:6559784-6560133:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7667236328125	2	499.766906	997.519259	-0.051563	-2.577E-05	-0.87383	-0.00043671	-0.92539	-0.00046248	499.76634597347083	36.535	1.1256	36.535	35.994	37.12	0					84	30	6	0	0	0	0.34489	1	2901	2901		69.628	7.5202	1	7121200	+		21483	34686	14820	14853	24820	24820					0.020399819208023473
GSAVSKKENIV	11	Unmodified	_GSAVSKKENIV_					0	0	0		IL4R-RBBP6|2|fusion;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;IL4R-RBBP6|3|fusion;ENSG00000122257|ENST00000319715|RBBP6	IL4R-RBBP6|2|fusion	IL4R-RBBP6|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.322265625	2	566.322045	1130.62954	0.070965	4.0189E-05	0.26956	0.00015266	0.34052	0.00019285	566.322303110478	105.93	0.62749	105.81	105.51	106.13	-0.12381					61	22	4	0	0	0	1.0392	1	13181	13181		28.081	0.19925	1	622550			21484	3917	14821	14854	24821	24821					0.06944782189157195
GSCFFLVIAFY	11	Unmodified	_GSCFFLVIAFY_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5133972167969	3	422.879099	1265.61547	-0.1102	-4.6603E-05	0.89031	0.00037649	0.78011	0.00032989	422.88059855912616	31.678	0.19903	31.746	31.606	31.805	0.068962					6	4	2	0	0	0	0.024724	1	2086	2086		9.2118	0	1	35698	+		21485	24036	14822	14855	24822	24822					-0.006715865634532747
GSDDREMPQHQ	11	Unmodified	_GSDDREMPQHQ_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.4981384277344	3	433.850931	1298.53096	-0.12062	-5.233E-05	1.5794	0.00068522	1.4588	0.00063289	433.8515634693561	39.906	0.69772	39.681	39.38	40.078	-0.22501					38	17	3	0	0	0	0.024742	1	3414	3414		38.714	16.134	1	632510	+		21486	23218	14823	14856	24823	24823					-0.10636189118167749
GSDGLVKLW	9	Unmodified	_GSDGLVKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7689208984375	2	487.768917	973.523281	0.64926	0.00031669	-0.22131	-0.00010795	0.42795	0.00020874	487.7685385620983	67.855	1.2375	67.599	66.911	68.148	-0.25516					61	29	4	0	0	0	0.015901	2	7810	7810;7822		157.33	41.87	1	1640900			21487	9269	14824	14857	24824;24825	24824					0.03546071414530161
GSDGLVKLW	9	Unmodified	_GSDGLVKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7683410644531	2	487.768917	973.523281	0.16722	8.1565E-05	0.35746	0.00017436	0.52468	0.00025592	487.7688292778969	67.812	1.1067	67.578	67.012	68.119	-0.23376					56	26	4	0	0	0	0.03849	3	7824	7813;7824;7843		134.81	35.436	1	1559600			21488	9269	14824	14857	24826;24827;24828	24827					0.03546071414530161
GSDGLVKLW	9	Unmodified	_GSDGLVKLW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7686767578125	2	487.768917	973.523281	0.24327	0.00011866	0.1256	6.1266E-05	0.36887	0.00017992	487.7687266449494	67.823	0.78659	67.585	67.245	68.031	-0.23814					43	18	3	0	0	0	0.020687	3	7802	7802;7814;7826		148.99	44.512	1	1585000			21489	9269	14824	14857	24829;24830;24831	24829					0.03546071414530161
GSDRAIVRL	9	Unmodified	_GSDRAIVRL_					0	0	0			REV__nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11	REV__nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7905578613281	2	493.790715	985.566878	-1.011	-0.00049923	0.4759	0.00023499	-0.53512	-0.00026424	493.7908941516755	24.288	1.1019	24.241	23.656	24.758	-0.047146					93	24	6	0	0	0	0.50848	1	1049	1049		58.782	0	1	1236400	+		21490	29047	14825	14858	24832	24832					0.07351680911676794
GSDRPESTV	9	Unmodified	_GSDRPESTV_					0	0	0		ENST00000524499.1_1_8:145133483-145133633:-|nuORF	ENST00000524499.1_1_8:145133483-145133633:-|nuORF	ENST00000524499.1_1_8:145133483-145133633:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.25341796875	2	474.225071	946.435589	-0.27493	-0.00013038	0.38433	0.00018226	0.1094	5.1879E-05	474.22510932825037	30.741	0.53612	30.741	30.467	31.003	0					28	12	3	0	0	0	0.023837	1	1968	1968		64.207	18.255	1	297070			21491	16062	14826	14859	24833	24833					-0.039771742468929006
GSDTAGNAHKN	11	Unmodified	_GSDTAGNAHKN_					0	0	0		ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2469482421875	2	536.244326	1070.4741	0.34311	0.00018399	4.247	0.0022774	4.5901	0.0024614	536.2463994514429	70.461	2.043	70.168	69.714	71.757	-0.29292					98	55	3	0	0	0	1.0183	1	8476	8476		32.751	3.601	1	4878300			21492	5945	14827	14860	24834	24834					-0.058318686123584484
GSDVVSVLERR	11	Unmodified	_GSDVVSVLERR_					0	0	0			REV__ENST00000534788.1_1_11:118795899-118828340:+|nuORF	REV__ENST00000534788.1_1_11:118795899-118828340:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.8360595703125	2	608.835851	1215.65715	-1.0376	-0.00063172	2.7949	0.0017016	1.7573	0.0010699	608.8374403487405	109.72	0.52835	109.72	109.52	110.05	0.0059204					63	25	4	0	0	0	1.0592	1	13844	13844		22.58	0.61977	1	5115400	+		21493	34654	14828	14861	24835	24835					0.05794685449427561
GSEDGTLRLW	10	Unmodified	_GSEDGTLRLW_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.2838134765625	2	567.28292	1132.55129	-0.34815	-0.0001975	0.63333	0.00035928	0.28518	0.00016178	567.283003612372	65.349	0.90495	65.114	64.808	65.713	-0.23466					60	16	5	0	0	0	0.090646	2	7457	7457;7467		138.06	59.799	1	2170200			21494	976	14829	14862	24836;24837	24836					-0.009686503960438131
GSEDGTLRLW	10	Unmodified	_GSEDGTLRLW_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.2831420898438	2	567.28292	1132.55129	-1.3012	-0.00073812	1.277	0.00072444	-0.024124	-1.3685E-05	567.2835722984759	65.336	0.61519	65.133	64.859	65.474	-0.20254					38	14	3	0	0	0	0.061759	2	7459	7459;7470		145.16	73.86	1	2234600			21495	976	14829	14862	24838;24839	24838					-0.009686503960438131
GSEDGTLRLW	10	Unmodified	_GSEDGTLRLW_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.2833251953125	2	567.28292	1132.55129	-0.52034	-0.00029518	0.50292	0.0002853	-0.017427	-9.8863E-06	567.2831282884732	65.39	0.61441	65.138	64.864	65.479	-0.25112					40	14	3	0	0	0	0.14896	2	7450	7450;7462		127.46	54.582	1	2236200			21496	976	14829	14862	24840;24841	24840					-0.009686503960438131
GSEDGTVRIW	10	Unmodified	_GSEDGTVRIW_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7994384765625	2	560.275095	1118.53564	-0.9645	-0.00054039	0.50915	0.00028526	-0.45535	-0.00025512	560.2752518168263	55.509	0.6317	55.353	54.975	55.607	-0.15656					51	17	4	0	0	0	0.03519	1	5959	5959		85.862	22.328	1	2903600			21497	9337	14830	14863	24842	24842					-0.01888936913087491
GSEDGTVRIW	10	Unmodified	_GSEDGTVRIW_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7991333007812	2	560.275095	1118.53564	-0.14226	-7.9705E-05	-0.39268	-0.00022001	-0.53494	-0.00029971	560.2747008459262	55.578	0.5534	55.362	55.079	55.633	-0.21607					49	15	4	0	0	0	0.03519	1	5963	5963		66.962	12.24	1	2985300			21498	9337	14830	14863	24843	24843					-0.01888936913087491
GSEDGTVRIW	10	Unmodified	_GSEDGTVRIW_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7994384765625	2	560.275095	1118.53564	-0.89532	-0.00050163	0.36255	0.00020313	-0.53277	-0.0002985	560.2751423487467	55.601	0.56642	55.385	55.07	55.637	-0.21551					50	15	5	0	0	0	0.03519	1	5956	5956		90.601	17.722	1	2969800			21499	9337	14830	14863	24844	24844					-0.01888936913087491
GSEEGLKKW	9	Unmodified	_GSEEGLKKW_					0	0	0			REV__ENSG00000173226|ENST00000310864|IQCB1	REV__ENSG00000173226|ENST00000310864|IQCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2672119140625	2	517.269281	1032.52401	-0.33559	-0.00017359	1.2155	0.00062874	0.8799	0.00045515	517.2699524708165	28.212	0.87427	28.06	27.61	28.484	-0.15195					69	21	4	0	0	0	0.27161	1	1588	1588		79.451	2.1334	1	1847600	+		21500	26754	14831	14864	24845	24845					0.00904866063569898
GSEGLFSDLGE	11	Unmodified	_GSEGLFSDLGE_					0	0	0		ENST00000460813.5_1_3:113755834-113765458:-|nuORF	ENST00000460813.5_1_3:113755834-113765458:-|nuORF	ENST00000460813.5_1_3:113755834-113765458:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.7534790039062	2	555.751118	1109.48768	-0.1682	-9.3477E-05	4.1889	0.002328	4.0207	0.0022345	555.7535724952345	106.43	0.30792	106.43	106.27	106.57	-0.0013123					14	8	2	0	0	0	0.99553	1	13618	13618		37.812	3.639	1	133400			21501	14665	14832	14865	24846	24846					-0.06268055623809232
GSEGLFSDLGE	11	Unmodified	_GSEGLFSDLGE_					0	0	0		ENST00000460813.5_1_3:113755834-113765458:-|nuORF	ENST00000460813.5_1_3:113755834-113765458:-|nuORF	ENST00000460813.5_1_3:113755834-113765458:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.751118	1109.48768	0.1673	9.2975E-05	3.6203	0.002012	3.7876	0.002105	555.7532981376336	106.5	0.30405	106.51	106.34	106.64	0.0018311	0.036107	-0.00038319	NaN	37.812	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145390			21502	14665	14832	14865							-0.06268055623809232
GSEPILEER	9	Unmodified	_GSEPILEER_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.8050537109375	2	515.264196	1028.51384	-0.50376	-0.00025957	-3.7163	-0.0019149	-4.2201	-0.0021744	515.261414003502	56.539	0.81989	56.539	55.892	56.712	0					31	22	2	0	0	0	0.024427	1	6298	6298		42.396	1.618	1	134980			21503	6301	14833	14866	24847	24847					0.0007225833833217621
GSETKIKKKD	10	Unmodified	_GSETKIKKKD_					0	0	0			REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3305053710938	2	567.32987	1132.64519	-0.4315	-0.0002448	-0.024713	-1.4021E-05	-0.45621	-0.00025882	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.0447	1	11370	11370		40.058	4.4399	1	13648000	+		21504	22675	14834	14867	24848	24848					0.08417068706262398
GSFEQKLNW	9	Unmodified	_GSFEQKLNW_					0	0	0		ENSG00000163032|ENST00000295156|VSNL1;ENSG00000116983|ENST00000372844|HPCAL4	ENSG00000163032|ENST00000295156|VSNL1	ENSG00000163032|ENST00000295156|VSNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.7744140625	2	554.774731	1107.53491	0.036059	2.0005E-05	-0.35316	-0.00019592	-0.3171	-0.00017592	554.7745465594048	57.721	0.71687	57.531	57.112	57.829	-0.19017					54	18	4	0	0	0	0.50848	1	6307	6307		58.782	0.55203	1	6075200			21505	3597	14835	14868	24849	24849					-0.014557315621232192
GSFGLALKV	9	Unmodified	_GSFGLALKV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.268798828125	2	446.268553	890.522553	-0.69568	-0.00031046	0.9431	0.00042088	0.24742	0.00011042	446.2688416787207	65.139	1.2264	65.139	64.8	66.026	0					81	33	4	0	0	0	0.20967	1	7688	7688		87.754	27.46	1	5940900			21506	4546	14836	14869	24850	24850					0.07291276765454313
GSFGLALKV	9	Unmodified	_GSFGLALKV_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.2687072753906	2	446.268553	890.522553	-0.2923	-0.00013045	0.59588	0.00026592	0.30357	0.00013547	446.26869048453557	65.101	0.96535	65.138	64.854	65.82	0.037384					69	26	4	0	0	0	0.45795	1	7604	7604		62.107	3.3255	1	4787000			21507	4546	14836	14869	24851	24851					0.07291276765454313
GSFKEALNV	9	Unmodified	_GSFKEALNV_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.77435302734375	2	482.758549	963.502546	0.056029	2.7048E-05	0.16451	7.942E-05	0.22054	0.00010647	482.75855779397114	49.842	0.79225	49.691	49.368	50.16	-0.1512					60	21	4	0	0	0	0.024253	1	5152	5152		61.691	27.519	1	2169900			21508	8496	14837	14870	24852	24852					0.01933481034848228
GSFRSHAASTT	11	Unmodified	_GSFRSHAASTT_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2696533203125	2	561.270344	1120.52613	-1.2106	-0.00067947	-0.35419	-0.0001988	-1.5648	-0.00087826	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	0.95664	2	1335	1254;1335		46.457	8.6453	1	242840000			21509	7690	14838	14871	24853;24854	24854					-0.029307051986279475
GSGDSTARIW	10	Unmodified	_GSGDSTARIW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2542724609375	2	525.254163	1048.49377	-0.87676	-0.00046052	0.7574	0.00039783	-0.11936	-6.2697E-05	525.2543850781498	45.166	1.2139	45.066	44.244	45.458	-0.099445					64	32	3	0	0	0	0.58878	2	4268	4256;4268		78.264	28.728	1	2577000			21510	2353	14839	14872	24855;24856	24856					-0.02853492601616381
GSGDSTARIW	10	Unmodified	_GSGDSTARIW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2537841796875	2	525.254163	1048.49377	-0.18956	-9.9568E-05	-0.14518	-7.6258E-05	-0.33474	-0.00017583	525.2539366278585	45.359	0.85184	45.106	44.786	45.638	-0.25252					56	23	3	0	0	0	0.811	1	4272	4272		59.931	15.4	1	2999500			21511	2353	14839	14872	24857	24857					-0.02853492601616381
GSGDSTARIW	10	Unmodified	_GSGDSTARIW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.254150390625	2	525.254163	1048.49377	-0.32494	-0.00017068	0.012156	6.3852E-06	-0.31279	-0.00016429	525.2540745640168	45.278	0.77264	45.067	44.677	45.449	-0.21109					48	21	3	0	0	0	0.6365	2	4279	4266;4279		72.879	19.943	1	2962100			21512	2353	14839	14872	24858;24859	24859					-0.02853492601616381
GSGGVSVPAL	10	Unmodified	_GSGGVSVPAL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5925598144531	2	422.232168	842.449782	0.1577	6.6585E-05	0.66721	0.00028172	0.8249	0.0003483	422.23238192502595	49.62	0.40598	49.62	49.362	49.768	0					19	10	2	0	0	0	0.03519	1	5153	5153		32.812	11.11	1	135910			21513	8496	14840	14873	24860	24860					0.022255229720371972
GSGGVSVPAL	10	Unmodified	_GSGGVSVPAL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5923156738281	2	422.232168	842.449782	-0.90942	-0.00038399	1.6879	0.00071268	0.77847	0.0003287	422.23269556623023	49.547	0.48812	49.622	49.316	49.804	0.074192					24	12	3	0	0	0	0.03519	1	5070	5070		49.442	20.292	1	161550			21514	8496	14840	14873	24861	24861					0.022255229720371972
GSGGVSVPAL	10	Unmodified	_GSGGVSVPAL_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.232168	842.449782	-0.0022491	-9.4966E-07	0.72526	0.00030623	0.72301	0.00030528	422.2323891743772	49.766	0.44932	49.614	49.368	49.817	-0.1512	-0.0042428	-0.00017958	NaN	32.812	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185080			21515	8496	14840	14873							0.022255229720371972
GSGLHGWAF	9	Unmodified	_GSGLHGWAF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.22467041015625	2	466.224677	930.434801	0.033111	1.5437E-05	-0.14018	-6.5355E-05	-0.10707	-4.9918E-05	466.2245105991068	61.447	0.66322	61.234	60.96	61.624	-0.21375					37	15	3	0	0	0	0.52323	1	6879	6879		57.811	13.28	1	1293700			21516	7717	14841	14874	24862	24862					-0.033199241053011974
GSGLHGWAF	9	Unmodified	_GSGLHGWAF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.224677	930.434801	-0.80373	-0.00037472	0.86897	0.00040514	0.06524	3.0416E-05	466.22488691160595	61.253	0.7452	61.077	60.793	61.538	-0.1761	-0.10725	0.00044272	NaN	57.811	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	983020			21517	7717	14841	14874							-0.033199241053011974
GSGLHGWAF	9	Unmodified	_GSGLHGWAF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.224677	930.434801	-0.5886	-0.00027442	0.68723	0.0003204	0.098632	4.5985E-05	466.22478298105966	61.5	0.62045	61.243	60.968	61.588	-0.25725	0.058291	0.00027326	NaN	57.811	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1021800			21518	7717	14841	14874							-0.033199241053011974
GSGLSFLEWY	10	Unmodified	_GSGLSFLEWY_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.7564697265625	2	579.776939	1157.53933	-0.78286	-0.00045388	-0.92959	-0.00053895	-1.7124	-0.00099284	579.7757012001148	75.09	0.66444	74.827	74.489	75.153	-0.26325					19	15	3	0	0	0	0.03519	1	8897	8897		39.253	20.991	1	145380			21519	7880	14842	14875	24863	24863					-0.03314267139239746
GSGPQAYPKAL	11	Unmodified	_GSGPQAYPKAL_					0	0	0		ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7899780273438	2	544.790381	1087.56621	0.84588	0.00046083	-1.3051	-0.00071103	-0.45926	-0.0002502	544.789612384074	59.308	1.4213	59.111	58.675	60.096	-0.19651					97	38	4	0	0	0	0.55321	1	6757	6757		72.879	27.857	1	8781100			21520	2114	14843	14876	24864	24864					0.025928414719373905
GSGPQAYPKAL	11	Unmodified	_GSGPQAYPKAL_					0	0	0		ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7900390625	2	544.790381	1087.56621	-0.3967	-0.00021612	-0.094513	-5.149E-05	-0.49122	-0.00026761	544.7902510259166	58.949	1.5767	59.035	58.404	59.98	0.085682					111	42	5	0	0	0	0.28368	1	6639	6639		90.601	5.6853	1	8113600			21521	2114	14843	14876	24865	24865					0.025928414719373905
GSGPVRPERGY	11	Unmodified	_GSGPVRPERGY_					0	0	0			REV__nc|ENSG00000141736|P04626-6|ERBB2	REV__nc|ENSG00000141736|P04626-6|ERBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	588.3173828125	2	587.801811	1173.58907	-1.5211	-0.00089412	3.4941	0.0020538	1.973	0.0011597	587.8044302544462	28.484	0.71837	28.48	28.157	28.875	-0.0042019					19	16	2	0	0	0	0.02475	1	1693	1693		35.152	0	1	33125	+		21522	36726	14844	14877	24866	24866					0.009218605894375287
GSGRKVGPL	9	Unmodified	_GSGRKVGPL_					0	0	0			REV__ENST00000425081.2_1_17:1420280-1421117:+|nuORF	REV__ENST00000425081.2_1_17:1420280-1421117:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.78021240234375	2	435.761426	869.5083	-0.087464	-3.8113E-05	-0.134	-5.8391E-05	-0.22146	-9.6504E-05	435.7612574410274	36.523	1.7283	36.561	36.065	37.793	0.038044					69	46	2	0	0	0	0.024323	1	2789	2789		53.351	0	1	3562500	+		21523	32244	14845	14878	24867	24867					0.06832624337198467
GSGRLGPGLV	10	Unmodified	_GSGRLGPGLV_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7666931152344	2	456.766709	911.518865	-0.56917	-0.00025998	0.21691	9.9077E-05	-0.35227	-0.0001609	456.7666877348427	39.196	1.3682	39.097	38.475	39.844	-0.098755					96	37	4	0	0	0	0.61732	1	3328	3328		75.043	5.4157	1	3199100			21524	9098	14846	14879	24868	24868					0.05956606991617264
GSGRVPAPLP	10	Unmodified	_GSGRVPAPLP_					0	0	0		nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	nc|ENSG00000242372|P56537-2|EIF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7878112792969	2	475.774534	949.534515	-0.82248	-0.00039131	0.22913	0.00010902	-0.59334	-0.0002823	475.77435032503627	59.989	0.8225	60.068	59.533	60.356	0.078888					34	21	3	0	0	0	0.03519	1	6714	6714		45.972	0	1	740570			21525	18757	14847	14880	24869	24869					0.057728935086515776
GSGSGHQGH	9	Unmodified	_GSGSGHQGH_					0	0	0			REV__ENSG00000197915|ENST00000368801|HRNR	REV__ENSG00000197915|ENST00000368801|HRNR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.17572021484375	2	412.175715	822.336878	-0.20234	-8.3398E-05	0.26615	0.0001097	0.063813	2.6302E-05	412.1757556858591	91.904	1.5124	91.78	91.413	92.926	-0.12341					55	35	2	0	0	0	0.85329	1	11278	11278		35.618	5.1146	1	2202200	+	+	21526	19601	14848	14881	24870	24870					-0.0813973270128372
GSGSGHQGH	9	Unmodified	_GSGSGHQGH_					0	0	0			REV__ENSG00000197915|ENST00000368801|HRNR	REV__ENSG00000197915|ENST00000368801|HRNR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.17584228515625	2	412.175715	822.336878	0.30486	0.00012566	-0.30887	-0.00012731	-0.0040136	-1.6543E-06	412.1755098264753	91.998	1.6067	91.857	91.485	93.092	-0.14131					61	37	2	0	0	0	0.94809	1	11275	11275		29.15	2.3535	1	1918100	+	+	21527	19601	14848	14881	24871	24871					-0.0813973270128372
GSHRPRPIS	9	Unmodified	_GSHRPRPIS_					0	0	0			REV__ENST00000514773.1_1_5:141248719-141258783:-|nuORF	REV__ENST00000514773.1_1_5:141248719-141258783:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7787170410156	2	503.780682	1005.54681	-0.46554	-0.00023453	-3.7067	-0.0018674	-4.1722	-0.0021019	503.7786416227463	23.056	2.3766	23.056	21.146	23.523	0					94	51	3	0	0	0	0.74711	1	859	859		42.864	4.0581	1	711780	+		21528	34181	14849	14882	24872	24872					0.044259299716941314
GSHVGIRIW	9	Unmodified	_GSHVGIRIW_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.78564453125	2	512.787976	1023.5614	-0.28426	-0.00014577	-1.1638	-0.00059681	-1.4481	-0.00074257	512.7872521722348	66.624	0.47101	66.376	66.021	66.492	-0.2484					34	12	4	0	0	0	1.0148	1	7661	7661		17.365	1.7232	1	2668400	+		21529	20414	14850	14883	24873	24873					0.050560021198293725
GSILVEEAFHV	11	Unmodified	_GSILVEEAFHV_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MSMS	OPSCC_40_ClassI_Rep-3	6	400.8807067871094	3	400.880156	1199.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.193	1	16.942	16.442	17.442	-0.25049								0	0	0	1.5301	1	128	128		14.086	1.2743	1		+		21530	20429	14851	14884	24874	24874					0.02681379814907814
GSILYLPVK	9	Unmodified	_GSILYLPVK_					0	0	0		PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant;nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2;PPP3CC-PIWIL2|1|fusion	PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	PIWIL2|p.Q715Rfs*22|1|0.26|ENSG00000197181|chr8:22315078-22315078|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.292236328125	2	495.305136	988.595718	0.44866	0.00022223	2.9881	0.00148	3.4367	0.0017022	495.3066524736558	68.407	0.27964	68.176	68.077	68.357	-0.23048					10	6	2	0	0	0	0.02435	1	7925	7925		51.335	15.717	1	443820			21531	9970	14852	14885	24875	24875					0.10096405488093296
GSIPDERLY	9	Unmodified	_GSIPDERLY_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2665405273438	2	525.266739	1048.51892	-0.077198	-4.055E-05	0.37066	0.0001947	0.29347	0.00015415	525.266837463713	51.16	0.98569	50.884	50.627	51.613	-0.27643					57	25	3	0	0	0	0.82115	1	5227	5227		37.812	0.65241	1	1351300			21532	958	14853	14886	24876	24876					-0.00339437799038933
GSIPDERLY	9	Unmodified	_GSIPDERLY_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.266739	1048.51892	0.39957	0.00020988	0.098117	5.1537E-05	0.49768	0.00026142	525.2666350125804	50.913	1.0232	50.801	50.451	51.475	-0.11163	-0.051816	0.00018025	NaN	37.812	68	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1392400			21533	958	14853	14886							-0.00339437799038933
GSKDKNFQW	9	Unmodified	_GSKDKNFQW_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.2725219726562	2	555.272355	1108.53016	-0.22298	-0.00012381	-0.15601	-8.6629E-05	-0.37899	-0.00021044	555.2721505352079	36.55	0.9672	36.344	35.987	36.954	-0.20518					75	24	4	0	0	0	0.12914	1	2879	2879		104.06	21.816	1	5506800			21534	6328	14854	14887	24877	24877					-0.019766157048934474
GSKDKNFQW	9	Unmodified	_GSKDKNFQW_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.2730712890625	2	555.272355	1108.53016	0.12784	7.0984E-05	-0.41956	-0.00023297	-0.29172	-0.00016198	555.271850174914	36.438	1.1573	36.221	35.845	37.002	-0.21661					97	29	5	0	0	0	0.086035	2	2872	2861;2872		115.49	30.333	1	5002100			21535	6328	14854	14887	24878;24879	24879					-0.019766157048934474
GSKDKNFQW	9	Unmodified	_GSKDKNFQW_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2725830078125	2	555.272355	1108.53016	1.2534	0.000696	-1.8737	-0.0010404	-0.62023	-0.0003444	555.2711918850518	36.35	1.2294	36.152	35.742	36.972	-0.19829					79	31	4	0	0	0	0.26966	2	2863	2849;2863		79.713	29.688	1	4536900			21536	6328	14854	14887	24880;24881	24881					-0.019766157048934474
GSLDDLVKVW	10	Unmodified	_GSLDDLVKVW_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8;ENST00000559700.5_1_15:78584919-78588040:-|nuORF	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.30419921875	2	566.305864	1130.59717	0.10866	6.1535E-05	-0.77496	-0.00043886	-0.6663	-0.00037733	566.3054775059153	80.92	0.81041	80.682	80.369	81.179	-0.23783					36	19	2	0	0	0	0.20166	2	9695	9695;9705		120.87	41.709	1	1582200			21537	5407	14855	14888	24882;24883	24882					0.03709994786186144
GSLDDLVKVW	10	Unmodified	_GSLDDLVKVW_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8;ENST00000559700.5_1_15:78584919-78588040:-|nuORF	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.3051147460938	2	566.305864	1130.59717	0.36381	0.00020602	-1.1439	-0.00064782	-0.78013	-0.00044179	566.3052841755245	80.909	0.81467	80.703	80.426	81.241	-0.20633					37	19	2	0	0	0	0.061759	2	9720	9708;9720		145.16	60.24	1	1559500			21538	5407	14855	14888	24884;24885	24885					0.03709994786186144
GSLDDLVKVW	10	Unmodified	_GSLDDLVKVW_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8;ENST00000559700.5_1_15:78584919-78588040:-|nuORF	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.3047485351562	2	566.305864	1130.59717	-0.2063	-0.00011683	-0.59026	-0.00033427	-0.79656	-0.0004511	566.3056050259928	80.843	0.98653	80.697	80.409	81.396	-0.146					42	23	2	0	0	0	0.1587	2	9682	9682;9693		126.24	60.777	1	1631400			21539	5407	14855	14888	24886;24887	24886					0.03709994786186144
GSLEFRGQFY	10	Unmodified	_GSLEFRGQFY_					0	0	0			REV__ENSG00000223601|ENST00000422359|EBLN1	REV__ENSG00000223601|ENST00000422359|EBLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.8662109375	3	401.864617	1202.57202	0.48426	0.00019461	2.9424	0.0011825	3.4267	0.0013771	401.86569934878145	43.469	0.80042	43.232	42.8	43.6	-0.23736					79	21	5	0	0	0	1.0639	1	3969	3969		37.508	1.1905	1	5163100	+		21540	28852	14856	14889	24888	24888					-0.021160600163739218
GSLLAVRGKL	10	Unmodified	_GSLLAVRGKL_					0	0	0			REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3316345214844	2	507.326934	1012.63931	-0.011181	-5.6725E-06	-0.9417	-0.00047775	-0.95288	-0.00048342	507.32629310667403	41.522	1.1365	41.545	41.219	42.355	0.023003					77	32	4	0	0	0	0.61732	1	3698	3698		75.043	0.78827	1	5001100	+		21541	24678	14857	14890	24889	24889					0.13350014985246617
GSLLLLPE	8	Unmodified	_GSLLLLPE_					0	0	0			REV__ENSG00000165591|ENST00000374900|FAAH2	REV__ENSG00000165591|ENST00000374900|FAAH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.2539978027344	2	421.255111	840.49567	-0.65711	-0.00027681	-2.3117	-0.00097382	-2.9688	-0.0012506	421.25400509908565	83.365	1.0767	83.365	83.051	84.128	0					60	24	3	0	0	0	1.0574	1	10434	10434		24.203	1.1603	1	763990	+		21542	25904	14858	14891	24890	24890					0.06904168154289891
GSLLRLTAF	9	Unmodified	_GSLLRLTAF_					0	0	0		nc|ENSG00000130052|Q92502|STARD8;ENSG00000130052|ENST00000374599|STARD8	nc|ENSG00000130052|Q92502|STARD8	nc|ENSG00000130052|Q92502|STARD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.28814697265625	2	489.292559	976.570566	-0.053836	-2.6341E-05	-2.8299	-0.0013846	-2.8837	-0.001411	489.2910707589408	19.192	1.5686	19.073	18.118	19.686	-0.11872					67	31	3	0	0	0	0.83071	1	347	347		37.159	3.6435	1	263890			21543	4382	14859	14892	24891	24891					0.08134350685497793
GSLPLQYEW	9	Unmodified	_GSLPLQYEW_					0	0	0		nc|ENSG00000154639|P78310-2|CXADR;nc|ENSG00000154639|P78310-6|CXADR;ENSG00000154639|ENST00000284878|CXADR;ENST00000556905.2_1_15:22016140-22016464:-|nuORF;nc|ENSG00000154639|P78310-5|CXADR;nc|ENSG00000154639|P78310-7|CXADR	nc|ENSG00000154639|P78310-2|CXADR	nc|ENSG00000154639|P78310-2|CXADR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7716064453125	2	546.771657	1091.52876	-0.63558	-0.00034752	0.7804	0.0004267	0.14481	7.918E-05	546.7718597416558	81.044	0.82352	80.902	80.576	81.399	-0.14248					53	19	4	0	0	0	0.2101	1	9741	9741		87.696	13.441	1	1520500			21544	6420	14860	14893	24892	24892					-0.013342497936719155
GSLRYAEL	8	Unmodified	_GSLRYAEL_					0	0	0		ENST00000499522.6_1_8:104258868-104279674:-|nuORF	ENST00000499522.6_1_8:104258868-104279674:-|nuORF	ENST00000499522.6_1_8:104258868-104279674:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.74462890625	2	454.745442	907.476331	0.059719	2.7157E-05	-1.482	-0.00067391	-1.4222	-0.00064675	454.744685532615	101.18	1.8063	101.19	100.7	102.5	0.0090332					106	41	5	0	0	0	0.97924	1	12925	12925		40.573	1.7665	1	4694600			21545	15640	14861	14894	24893	24893					0.01889211863363016
GSMGLRSLW	9	Unmodified	_GSMGLRSLW_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7611389160156	2	503.760569	1005.50659	-0.36018	-0.00018145	0.44882	0.0002261	0.088639	4.4653E-05	503.76064943333705	65.335	0.98286	65.1	64.607	65.59	-0.2345					45	23	3	0	0	0	0.43628	1	7444	7444		63.534	4.7519	1	2105600			21546	3476	14862	14895	24894	24894					0.00405247256912844
GSMGLRSLW	9	Unmodified	_GSMGLRSLW_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7605285644531	2	503.760569	1005.50659	-1.4412	-0.00072601	1.4203	0.00071547	-0.020912	-1.0535E-05	503.76114622372575	65.274	0.86223	65.072	64.778	65.64	-0.20254					43	20	3	0	0	0	0.32064	3	7451	7442;7451;7463		72.879	1.0367	1	2635900			21547	3476	14862	14895	24895;24896;24897	24896					0.00405247256912844
GSMGLRSLW	9	Unmodified	_GSMGLRSLW_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7604675292969	2	503.760569	1005.50659	-0.74799	-0.00037681	0.50329	0.00025354	-0.24469	-0.00012327	503.7608342183973	65.32	0.90054	65.069	64.743	65.644	-0.25112					63	21	5	0	0	0	0.32064	1	7445	7445		72.879	11.907	1	2243300			21548	3476	14862	14895	24898	24898					0.00405247256912844
GSNPHLQTF	9	Unmodified	_GSNPHLQTF_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7458190917969	2	500.745973	999.477394	-0.21077	-0.00010554	0.36429	0.00018242	0.15352	7.6874E-05	500.7459640411404	41.265	0.83121	41.13	40.908	41.74	-0.13553					49	21	3	0	0	0	0.03201	2	3637	3626;3637		139.97	71.486	1	1504100			21549	5353	14863	14896	24899;24900	24900					-0.02236573767720529
GSNPHLQTF	9	Unmodified	_GSNPHLQTF_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7457275390625	2	500.745973	999.477394	-0.34879	-0.00017466	0.37658	0.00018857	0.027782	1.3912E-05	500.74595963216956	41.431	0.94132	41.203	40.966	41.908	-0.2278					50	24	3	0	0	0	0.086035	2	3649	3649;3660		115.49	44.116	1	1479500			21550	5353	14863	14896	24901;24902	24901					-0.02236573767720529
GSNPHLQTF	9	Unmodified	_GSNPHLQTF_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7463073730469	2	500.745973	999.477394	-0.7794	-0.00039028	0.61155	0.00030623	-0.16785	-8.4051E-05	500.746132649625	41.511	0.72237	41.281	41.003	41.725	-0.2303					34	18	2	0	0	0	0.17845	1	3648	3648		93.143	13.204	1	1568300			21551	5353	14863	14896	24903	24903					-0.02236573767720529
GSPFCSCFPD	10	Unmodified	_GSPFCSCFPD_					0	0	0			REV__ENST00000457308.5_1_2:39025579-39029887:-|nuORF	REV__ENST00000457308.5_1_2:39025579-39029887:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3229370117188	2	530.199153	1058.38375	0.025487	1.3513E-05	2.682	0.001422	2.7075	0.0014355	530.2005501454576	37.28	0.93414	37.087	36.375	37.309	-0.193					27	23	2	0	0	0	0.03519	1	2886	2886		34.173	3.6689	1	111480	+		21552	32804	14864	14897	24904	24904					-0.14310377256674656
GSPFKRSYLVL	11	Unmodified	_GSPFKRSYLVL_					0	0	0			REV__ENSG00000145321|ENST00000273951|GC	REV__ENSG00000145321|ENST00000273951|GC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.59246826171875	3	422.911679	1265.71321	0.15831	6.695E-05	-0.62024	-0.00026231	-0.46193	-0.00019536	423.24533991439216	50.021	0.094059	50.102	50.022	50.117	0.08099					4	2	2	0	0	0	0.024746	1	5130	5130		7.6794	0	1	120340	+		21553	24397	14865	14898	24905	24905					0.09097938356876512
GSPGWKTI	8	Unmodified	_GSPGWKTI_					0	0	0		ENST00000459956.1_1_22:39928562-39928691:-|nuORF	ENST00000459956.1_1_22:39928562-39928691:-|nuORF	ENST00000459956.1_1_22:39928562-39928691:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5131530761719	2	423.229428	844.444303	-0.63487	-0.00026869	-0.26707	-0.00011303	-0.90193	-0.00038172	423.22836678678823	32.243	0.19069	32.243	32.109	32.3	0					6	4	2	0	0	0	0.027866	1	2207	2207		35.618	3.6634	1	44065			21554	14644	14866	14899	24906	24906					0.015858441802379275
GSPLFGDVH	9	Unmodified	_GSPLFGDVH_					0	0	0			REV__ENST00000433540.5_1_12:105325484-105351981:-|nuORF	REV__ENST00000433540.5_1_12:105325484-105351981:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.90069580078125	2	464.729792	927.445031	0.59587	0.00027692	3.0457	0.0014154	3.6415	0.0016923	464.73106878534776	19.966	0.63401	19.742	19.533	20.167	-0.22344					17	12	2	0	0	0	0.024457	1	511	511		37.159	11.709	1	57243	+		21555	32390	14867	14900	24907	24907					-0.02159361170708962
GSPLFGDVH	9	Unmodified	_GSPLFGDVH_					0	0	0			REV__ENST00000433540.5_1_12:105325484-105351981:-|nuORF	REV__ENST00000433540.5_1_12:105325484-105351981:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.729792	927.445031	2.8676	0.0013327	0.64955	0.00030186	3.5172	0.0016345	464.73012206638526	19.645	0.47942	19.711	19.587	20.067	0.066195	0.072489	-0.0016276	NaN	37.159	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42887	+		21556	32390	14867	14900							-0.02159361170708962
GSPLKSRAR	9	Unmodified	_GSPLKSRAR_					0	0	0			REV__ENSG00000135720|ENST00000258198|DYNC1LI2	REV__ENSG00000135720|ENST00000258198|DYNC1LI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2915344238281	2	486.290882	970.567212	0.86071	0.00041855	1.1265	0.00054781	1.9872	0.00096637	486.29141327896167	59.829	1.5878	59.829	59.257	60.845	0					113	42	5	0	0	0	0.28753	1	6836	6836		77.318	14.011	1	28486000	+		21557	23572	14868	14901	24908	24908					0.08075100631515397
GSPLKSRAR	9	Unmodified	_GSPLKSRAR_					0	0	0			REV__ENSG00000135720|ENST00000258198|DYNC1LI2	REV__ENSG00000135720|ENST00000258198|DYNC1LI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2919616699219	2	486.290882	970.567212	-1.0516	-0.0005114	3.1325	0.0015233	2.0809	0.0010119	486.29234932981416	59.764	1.794	59.85	59.206	61	0.085682					123	47	5	0	0	0	0.40693	1	6743	6743		65.465	6.6834	1	19443000	+		21558	23572	14868	14901	24909	24909					0.08075100631515397
GSPLLPTAPP	10	Unmodified	_GSPLLPTAPP_					0	0	0		ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2665100097656	2	475.271293	948.528032	-0.39601	-0.00018821	1.3179	0.00062637	0.92191	0.00043816	475.2717239160817	31.099	1.2437	30.914	30.276	31.52	-0.18503					56	30	3	0	0	0	0.03519	1	2087	2087		37.159	5.2042	1	610610			21559	14442	14869	14902	24910	24910					0.051709555572642785
GSPMPEANPD	10	Unmodified	_GSPMPEANPD_					0	0	0		AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant;nc|ENSG00000178522|Q9NP70-2|AMBN;ENSG00000178522|ENST00000322937|AMBN	AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant	AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27191162109375	2	507.713482	1013.41241	-0.51121	-0.00025955	3.2259	0.0016378	2.7147	0.0013783	507.7155550173021	35.848	0.48061	35.892	35.658	36.139	0.04406					17	12	2	0	0	0	0.03519	1	2732	2732		22.58	0	1	55307			21560	81	14870	14903	24911	24911					-0.09375936355888825
GSPQVVGNI	9	Unmodified	_GSPQVVGNI_					0	0	0			REV__ENSG00000135999|ENST00000258484|EPC2	REV__ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7796936035156	2	435.737617	869.460681	0.015002	6.537E-06	-0.23934	-0.00010429	-0.22434	-9.7754E-05	435.7375063190228	45.307	0.39922	45.096	44.95	45.349	-0.21109					17	11	2	0	0	0	0.024374	1	4267	4267		32.812	11.865	1	144820	+		21561	23609	14871	14904	24912	24912					0.020729253463287023
GSPQVVGNI	9	Unmodified	_GSPQVVGNI_					0	0	0			REV__ENSG00000135999|ENST00000258484|EPC2	REV__ENSG00000135999|ENST00000258484|EPC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.737617	869.460681	-0.02856	-1.2445E-05	-1.9196	-0.00083645	-1.9482	-0.00084889	435.73616235315177	45.42	0.45327	45.167	44.905	45.359	-0.25252	0.035502	-0.0012002	NaN	32.812	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97170	+		21562	23609	14871	14904							0.020729253463287023
GSPRSWLMSTR	11	Unmodified	_GSPRSWLMSTR_					0	0	0		ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.7749328613281	3	426.552156	1276.63464	-0.50755	-0.0002165	-2.2193	-0.00094663	-2.7268	-0.0011631	426.5511513459888	43.498	0.35191	43.272	43.061	43.413	-0.22597					22	9	3	0	0	0	0.024757	1	3964	3964		20.315	0.28454	1	421910			21563	12259	14872	14905	24913	24913					0.007387627801563212
GSPVTERAIPL	11	Unmodified	_GSPVTERAIPL_					0	0	0		ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7489624023438	2	570.324588	1138.63462	-0.31755	-0.00018111	4.1586	0.0023717	3.841	0.0021906	570.3268799021079	69.961	0.38028	69.693	69.493	69.874	-0.26725					16	8	2	0	0	0	0.024795	1	8114	8114		51.193	6.1705	1	141120			21564	8705	14873	14906	24914	24914					0.07085086051802136
GSPVTERAIPL	11	Unmodified	_GSPVTERAIPL_					0	0	0		ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7484130859375	2	570.324588	1138.63462	0.168	9.5813E-05	3.2093	0.0018303	3.3773	0.0019261	570.3264901193978	69.823	0.54248	69.572	69.399	69.942	-0.25063					19	12	2	0	0	0	0.024771	1	8133	8133		42.864	18.345	1	161690			21565	8705	14873	14906	24915	24915					0.07085086051802136
GSRASSPLPR	10	Unmodified	_GSRASSPLPR_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP;ENST00000484073.1_1_2:63791725-63815411:-|nuORF	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8217163085938	2	514.285797	1026.55704	-0.58362	-0.00030015	-3.686	-0.0018957	-4.2696	-0.0021958	514.7871897912358	56.402	0.61699	56.238	56.058	56.675	-0.16431					22	16	2	0	0	0	0.03519	1	6308	6308		49.536	10.73	1	337840			21566	5703	14874	14907	24916	24916					0.04482492906254265
GSRETSEKF	9	Unmodified	_GSRETSEKF_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;NCOA4|p.N319K|1|0.18|ENSG00000266412|chr10:46010964-46010964|A/T|missense_variant	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7538452148438	2	520.753995	1039.49344	0.15188	7.909E-05	-0.71971	-0.00037479	-0.56784	-0.0002957	520.7534670072711	21.981	0.52369	21.793	21.531	22.055	-0.18894					27	10	4	0	0	0	0.82115	1	746	746		37.812	4.2959	1	262240			21567	18787	14875	14908	24917	24917					-0.024729123214683568
GSRETSEKF	9	Unmodified	_GSRETSEKF_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;NCOA4|p.N319K|1|0.18|ENSG00000266412|chr10:46010964-46010964|A/T|missense_variant	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7536010742188	2	520.753995	1039.49344	-0.20193	-0.00010515	-0.48698	-0.0002536	-0.68891	-0.00035875	520.7536168239532	22.166	0.65398	21.98	21.715	22.369	-0.18539					32	13	3	0	0	0	0.64897	1	755	755		49.536	3.5638	1	261960			21568	18787	14875	14908	24918	24918					-0.024729123214683568
GSRSTPGPFFW	11	Unmodified	_GSRSTPGPFFW_					0	0	0		ENST00000318291.4_1_12:752304-752412:+|nuORF	ENST00000318291.4_1_12:752304-752412:+|nuORF	ENST00000318291.4_1_12:752304-752412:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2406005859375	3	413.536612	1237.58801	-0.10165	-4.2037E-05	-1.8312	-0.00075727	-1.9329	-0.00079931	413.53559500578615	33.793	0.68359	33.569	33.239	33.923	-0.22412					23	16	2	0	0	0	0.024774	1	2479	2479		52.167	25.417	1	373070			21569	12173	14876	14909	24919	24919					-0.021283537794943186
GSSCSSVLIR	10	Unmodified	_GSSCSSVLIR_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.75823974609375	2	504.760766	1007.50698	-0.33551	-0.00016935	-3.2237	-0.0016272	-3.5592	-0.0017965	504.75898913199535	60.018	1.3383	59.818	59.318	60.657	-0.20016					77	35	5	0	0	0	0.66532	1	6842	6842		69.628	2.134	1	2666700	+		21570	20656	14877	14910	24920	24920					0.003526221861193335
GSSDGTIRLW	10	Unmodified	_GSSDGTIRLW_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.278076171875	2	546.277638	1090.54072	-0.4302	-0.00023501	0.14523	7.9336E-05	-0.28497	-0.00015567	546.2776227151563	62.211	1.0311	61.998	61.252	62.283	-0.21375					70	25	4	0	0	0	0.040557	4	6978	6978;6990;7001;7016		150.36	20.94	1	8355800			21571	3380	14878	14911	24921;24922;24923;24924	24921					-0.0009263305048534676
GSSDGTIRLW	10	Unmodified	_GSSDGTIRLW_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.27783203125	2	546.277638	1090.54072	-0.99344	-0.0005427	0.63454	0.00034664	-0.3589	-0.00019606	546.2778851720547	62.158	1.0853	61.98	61.329	62.414	-0.17781					82	27	4	0	0	0	0.0046889	4	6982	6971;6982;6994;7008		180.87	35.714	1	8908400			21572	3380	14878	14911	24925;24926;24927;24928	24926					-0.0009263305048534676
GSSDGTIRLW	10	Unmodified	_GSSDGTIRLW_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2777099609375	2	546.277638	1090.54072	-0.67491	-0.00036869	0.23217	0.00012683	-0.44274	-0.00024186	546.2777199666851	62.312	0.94502	62.054	61.382	62.327	-0.25824					67	23	4	0	0	0	0.0081025	4	6989	6978;6989;7001;7016		172.25	21.887	1	8585500			21573	3380	14878	14911	24929;24930;24931;24932	24930					-0.0009263305048534676
GSSHLISTSSW	11	Unmodified	_GSSHLISTSSW_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.280517578125	2	581.280377	1160.5462	-0.55479	-0.00032249	0.052098	3.0283E-05	-0.50269	-0.0002922	581.2803643771553	52.201	0.81509	52.017	51.741	52.557	-0.18404					52	20	4	0	0	0	0.23292	1	5401	5401		95.815	13.065	1	2962000			21574	4940	14879	14912	24933	24933					-0.027649542586686948
GSSIPDVKPD	10	Unmodified	_GSSIPDVKPD_					0	0	0			REV__ENSG00000198816|ENST00000597229|ZNF358	REV__ENSG00000198816|ENST00000597229|ZNF358	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2811584472656	2	507.758746	1013.50294	-0.27822	-0.00014127	1.8806	0.00095487	1.6023	0.0008136	507.7594727078954	24.204	0.55394	24.029	23.829	24.383	-0.17484					33	12	4	0	0	0	0.03519	1	1006	1006		44.377	13.874	1	1222000	+		21575	28487	14880	14913	24934	24934					-0.003271440359526423
GSSQQGRLCTT	11	Unmodified	_GSSQQGRLCTT_					0	0	0		ENST00000422882.1_2_6:58276104-58276374:-|nuORF;ENST00000418368.1_2_6:58275323-58287466:-|nuORF	ENST00000422882.1_2_6:58276104-58276374:-|nuORF	ENST00000422882.1_2_6:58276104-58276374:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.267333984375	2	569.269487	1136.52442	0.70277	0.00040006	-3.7897	-0.0021574	-3.0869	-0.0017573	569.267209417792	18.775	2.752	18.618	17.605	20.357	-0.15637					109	55	4	0	0	0	1.0292	1	343	343		30.318	1.1477	1	212390			21576	13936	14881	14914	24935	24935					-0.038380822788894875
GSSSGFHSW	9	Unmodified	_GSSSGFHSW_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2012939453125	2	476.201399	950.388245	-0.14597	-6.9509E-05	0.5316	0.00025315	0.38564	0.00018364	476.2015122591709	40.371	0.76716	40.146	39.852	40.619	-0.225					43	20	4	0	0	0	0.53979	1	3481	3481		56.721	10.749	1	1555600			21577	2167	14882	14915	24936	24936					-0.08893408727237784
GSSSGFHSW	9	Unmodified	_GSSSGFHSW_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2010192871094	2	476.201399	950.388245	-1.0293	-0.00049018	1.5725	0.00074883	0.54317	0.00025866	476.20199000252137	40.394	0.63341	40.164	39.851	40.485	-0.23021					38	16	3	0	0	0	0.50848	1	3473	3473		58.782	5.4305	1	1459100			21578	2167	14882	14915	24937	24937					-0.08893408727237784
GSTELLVTW	9	Unmodified	_GSTELLVTW_					0	0	0		ENSG00000104998|ENST00000263379|IL27RA	ENSG00000104998|ENST00000263379|IL27RA	ENSG00000104998|ENST00000263379|IL27RA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.265869140625	2	503.266207	1004.51786	0.45836	0.00023068	-0.70104	-0.00035281	-0.24268	-0.00012213	503.26576945583906	81.939	1.1161	81.71	81.353	82.47	-0.2289					56	21	4	0	0	0	0.31037	1	9861	9861		74.255	12.148	1	1750900			21579	2629	14883	14916	24938	24938					0.01578347832048621
GSTELLVTW	9	Unmodified	_GSTELLVTW_					0	0	0		ENSG00000104998|ENST00000263379|IL27RA	ENSG00000104998|ENST00000263379|IL27RA	ENSG00000104998|ENST00000263379|IL27RA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.2662353515625	2	503.266207	1004.51786	0.082226	4.1382E-05	-0.38406	-0.00019329	-0.30184	-0.0001519	503.265967777977	81.932	0.93671	81.739	81.295	82.231	-0.19334					57	21	4	0	0	0	0.4752	1	9882	9882		60.972	9.7792	1	1715000			21580	2629	14883	14916	24939	24939					0.01578347832048621
GSTFMHVL	8	Unmodified	_GSTFMHVL_					0	0	0			REV__ENST00000356721.3_1_16:48396241-48399479:-|nuORF	REV__ENST00000356721.3_1_16:48396241-48399479:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.8965148925781	2	446.223288	890.432024	-0.56137	-0.00025049	-4.0009	-0.0017853	-4.5622	-0.0020358	446.2213234359572	23.801	0.99261	23.74	23.347	24.339	-0.06086					53	22	4	0	0	0	0.027866	1	1016	1016		35.201	8.4046	1	505770	+		21581	30798	14884	14917	24940	24940					-0.017575155544591325
GSTVLQGGIYL	11	Unmodified	_GSTVLQGGIYL_					0	0	0			REV__ENSG00000168394|ENST00000354258|TAP1	REV__ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3052368164062	2	554.305864	1106.59717	-0.88005	-0.00048782	0.30346	0.00016821	-0.57659	-0.00031961	554.3059575570084	75.594	1.3606	75.594	75.155	76.516	0					93	35	4	0	0	0	0.6032	1	9320	9320		69.628	3.1983	1	8513400	+		21582	26254	14885	14918	24941	24941					0.04813994786195508
GSTVSTVGISI	11	Unmodified	_GSTVSTVGISI_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7857971191406	2	510.782222	1019.54989	0.33721	0.00017224	2.8576	0.0014596	3.1948	0.0016319	510.7831976285189	87.112	1.3562	87.134	86.634	87.991	0.021263					50	32	3	0	0	0	0.72712	1	10890	10890		62.107	1.1355	1	1142000			21583	5790	14886	14919	24942	24942					0.04089715515226544
GSVHFGLV	8	Unmodified	_GSVHFGLV_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.26861572265625	2	408.224146	814.433738	1.2165	0.00049662	-0.060715	-2.4786E-05	1.1558	0.00047183	408.22363282501914	28.539	0.41571	28.62	28.411	28.826	0.080811					14	9	2	0	0	0	0.027866	1	1614	1614		20.482	9.6163	1	128020			21584	8599	14887	14920	24943	24943					0.01909861525814449
GSVIFFLLFVK	11	Unmodified	_GSVIFFLLFVK_					0	0	0			REV__ENST00000306984.6_1_7:40172470-40172641:-|nuORF	REV__ENST00000306984.6_1_7:40172470-40172641:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5622863769531	3	423.925037	1268.75328	1.5162	0.00064275	-0.82711	-0.00035063	0.68908	0.00029212	423.9244642899861	17.339	0.24952	17.185	17.108	17.358	-0.15403					7	4	2	0	0	0	0.024735	1	184	184		27.644	0.59661	1	25526	+		21585	30128	14888	14921	24944	24944					0.12965485027416435
GSVIKENC	8	Unmodified	_GSVIKENC_					0	0	0		ENSG00000137251|ENST00000259782|TINAG	ENSG00000137251|ENST00000259782|TINAG	ENSG00000137251|ENST00000259782|TINAG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7750549316406	2	425.210378	848.406203	0.39715	0.00016887	-4.1581	-0.0017681	-3.7609	-0.0015992	425.20852017374995	43.544	0.58005	43.575	43.267	43.847	0.030827					24	15	2	0	0	0	0.027866	1	3989	3989		23.042	4.7181	1	254850			21586	5104	14889	14922	24945	24945					-0.024064097967539055
GSVKLFQI	8	Unmodified	_GSVKLFQI_					0	0	0		CIRH1A-SNTB2|1|fusion;ENST00000569800.5_1_16:69167425-69171817:+|nuORF;CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|1|fusion;CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.26873779296875	2	446.268553	890.522553	-0.59657	-0.00026623	0.82121	0.00036648	0.22464	0.00010025	446.26878558467916	62.96	0.87074	62.96	62.651	63.522	0					52	22	3	0	0	0	0.12938	1	7347	7347		152.47	31.85	1	2611400			21587	446;447	14890	14923	24946	24946					0.07291276765454313
GSVKLFQI	8	Unmodified	_GSVKLFQI_					0	0	0		CIRH1A-SNTB2|1|fusion;ENST00000569800.5_1_16:69167425-69171817:+|nuORF;CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|1|fusion;CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.26861572265625	2	446.268553	890.522553	-0.086127	-3.8436E-05	0.39316	0.00017545	0.30703	0.00013702	446.26857600845204	63.162	0.69409	62.923	62.654	63.349	-0.23926					42	17	3	0	0	0	0.20995	1	7346	7346		138.83	36.052	1	2521500			21588	446;447	14890	14923	24947	24947					0.07291276765454313
GSVKLFQI	8	Unmodified	_GSVKLFQI_					0	0	0		CIRH1A-SNTB2|1|fusion;ENST00000569800.5_1_16:69167425-69171817:+|nuORF;CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|1|fusion;CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.26898193359375	2	446.268553	890.522553	0.72841	0.00032507	-0.54	-0.00024099	0.18841	8.4081E-05	446.2681659350065	62.943	0.87564	62.998	62.679	63.555	0.054104					45	22	3	0	0	0	0.07768	1	7257	7257		166.78	55.134	1	2367700			21589	446;447	14890	14923	24948	24948					0.07291276765454313
GSVKSFKRTKK	11	Unmodified	_GSVKSFKRTKK_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF;ENST00000567567.5_1_15:31233675-31258111:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10	ENSG00000166912|ENST00000435680|MTMR10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5932312011719	3	422.594461	1264.76155	-0.08907	-3.7641E-05	-4.0755	-0.0017223	-4.1646	-0.0017599	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0834	1	5326	5326		15.921	1.227	1	15587000			21590	7626	14891	14924	24949	24949					0.13976431996775318
GSVPCELVTIL	11	Unmodified	_GSVPCELVTIL_					0	0	0			REV__KNTC1|p.A2047T|1|0.27|ENSG00000184445|chr12:122618535-122618535|G/A|missense_variant	REV__KNTC1|p.A2047T|1|0.27|ENSG00000184445|chr12:122618535-122618535|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.8094482421875	2	565.809925	1129.6053	-0.2905	-0.00016437	3.3465	0.0018935	3.056	0.0017291	565.8117061332499	33.397	0.5615	33.454	33.21	33.771	0.056572					28	14	3	0	0	0	0.024768	1	2400	2400		47.657	3.2801	1	267390	+		21591	36194	14892	14925	24950	24950					0.045678057113264
GSVQDPGLHVW	11	Unmodified	_GSVQDPGLHVW_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG;ENST00000415012.1_1_2:85628700-85640330:-|nuORF	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.7987670898438	2	597.798737	1193.58292	-0.69993	-0.00041842	0.6682	0.00039945	-0.031732	-1.8969E-05	597.7990011222499	60.479	0.68346	60.273	59.975	60.658	-0.20599					46	16	4	0	0	0	3.8806E-07	1	6734	6734		181.41	91.037	1	1794100			21592	1080	14893	14926	24951	24951					-0.006126576421138452
GSVQDPGLHVW	11	Unmodified	_GSVQDPGLHVW_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG;ENST00000415012.1_1_2:85628700-85640330:-|nuORF	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.7984008789062	2	597.798737	1193.58292	-1.1889	-0.00071069	0.96542	0.00057713	-0.22343	-0.00013357	597.7992231135839	60.38	0.63667	60.204	59.922	60.559	-0.1761					46	15	4	0	0	0	1.0293E-09	1	6722	6722		204.62	124.17	1	1669800			21593	1080	14893	14926	24952	24952					-0.006126576421138452
GSVQDPGLHVW	11	Unmodified	_GSVQDPGLHVW_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG;ENST00000415012.1_1_2:85628700-85640330:-|nuORF	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.799072265625	2	597.798737	1193.58292	-0.81519	-0.00048732	0.52894	0.0003162	-0.28626	-0.00017112	597.7989291015282	60.522	0.72084	60.268	59.977	60.697	-0.25373					48	17	4	0	0	0	0.00023838	2	6741	6727;6741		163.15	95.657	1	1558600			21594	1080	14893	14926	24953;24954	24954					-0.006126576421138452
GSVQRGAGH	9	Unmodified	_GSVQRGAGH_					0	0	0		ENST00000360943.9_1_17:47005881-47006247:+|nuORF	ENST00000360943.9_1_17:47005881-47006247:+|nuORF	ENST00000360943.9_1_17:47005881-47006247:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7798156738281	2	434.722833	867.431112	-0.11915	-5.1798E-05	-4.2604	-0.0018521	-4.3796	-0.0019039	434.72091450734143	38.961	0.64878	38.961	38.639	39.288	0					35	17	3	0	0	0	0.02435	1	3329	3329		34.173	8.7224	1	906350			21595	12781	14894	14927	24955	24955					-0.007905938791395783
GSVRVKFSP	9	Unmodified	_GSVRVKFSP_					0	0	0			REV__TBX2|p.P137S|1|0.13|ENSG00000121068|chr17:61401697-61401697|C/T|missense_variant	REV__TBX2|p.P137S|1|0.13|ENSG00000121068|chr17:61401697-61401697|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.784423828125	2	488.782359	975.550165	0.38975	0.0001905	-0.99287	-0.0004853	-0.60312	-0.0002948	488.78179146163836	40.475	1.8011	40.363	39.64	41.441	-0.11222					128	49	4	0	0	0	0.62163	1	3566	3566		51.335	0	1	9956000	+		21596	37680	14895	14928	24956	24956					0.06141180025713311
GSVSIFRQF	9	Unmodified	_GSVSIFRQF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.779541015625	2	520.779816	1039.54508	-0.21598	-0.00011248	-0.38751	-0.00020181	-0.60349	-0.00031429	520.7795630908727	63.092	0.83489	62.871	62.576	63.411	-0.22097					64	20	4	0	0	0	0.013887	5	7099	7089;7099;7111;7123;7135		180.93	55.112	1	11732000			21597	6940	14896	14929	24957;24958;24959;24960;24961	24958					0.026888761630971203
GSVSIFRQF	9	Unmodified	_GSVSIFRQF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7794189453125	2	520.779816	1039.54508	-0.10228	-5.3264E-05	-0.89557	-0.00046639	-0.99784	-0.00051966	520.7792468741909	63.075	0.83029	62.892	62.596	63.426	-0.18386					69	21	4	0	0	0	0.014034	4	7120	7085;7096;7120;7132		166.68	53.267	1	11450000			21598	6940	14896	14929	24962;24963;24964;24965	24964					0.026888761630971203
GSVSIFRQF	9	Unmodified	_GSVSIFRQF_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7791137695312	2	520.779816	1039.54508	0.23805	0.00012397	-0.94014	-0.0004896	-0.70208	-0.00036563	520.7792854952677	63.202	0.91571	62.943	62.579	63.495	-0.25824					68	23	4	0	0	0	0.014034	5	7120	7091;7108;7120;7131;7146		190.52	51.692	1	12886000			21599	6940	14896	14929	24966;24967;24968;24969;24970	24968					0.026888761630971203
GSVSPLHLR	9	Unmodified	_GSVSPLHLR_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000136367|Q9C0A1-2|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2569885253906	2	483.279983	964.545414	-0.41123	-0.00019874	-0.20645	-9.9775E-05	-0.61768	-0.00029851	483.2796146987954	36.969	0.87719	37.003	36.575	37.452	0.034424					43	22	3	0	0	0	0.024495	1	2920	2920		34.173	17.468	1	644510			21600	5011	14897	14930	24971	24971					0.06172295882947765
GSVTFNGK	8	Unmodified	_GSVTFNGK_					0	0	0		ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	ENSG00000275395|ENST00000616721|FCGBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5111083984375	2	405.211235	808.407917	-0.48444	-0.0001963	0.75808	0.00030718	0.27364	0.00011088	405.2113879831438	32.288	0.46199	32.13	31.861	32.323	-0.15772					22	10	3	0	0	0	0.027866	1	2182	2182		44.117	0	1	318930			21601	11039;17648	14898	14931	24972	24972					-0.003950327164830014
GSVVQFKI	8	Unmodified	_GSVVQFKI_					0	0	0		ENSG00000177688|ENST00000326669|SUMO4;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;ENST00000434672.1_1_6:108939344-108939434:-|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENSG00000177688|ENST00000326669|SUMO4	ENSG00000177688|ENST00000326669|SUMO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2607421875	2	439.260728	876.506903	-0.040987	-1.8004E-05	-1.138	-0.0004999	-1.179	-0.0005179	439.2598697166272	58.582	0.65468	58.395	58.03	58.684	-0.18705					38	17	4	0	0	0	0.18427	1	6613	6613		143.11	40.334	1	3352500			21602	8764	14899	14932	24973	24973					0.06370990248422004
GSVVQFKI	8	Unmodified	_GSVVQFKI_					0	0	0		ENSG00000177688|ENST00000326669|SUMO4;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;ENST00000434672.1_1_6:108939344-108939434:-|nuORF;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENSG00000177688|ENST00000326669|SUMO4	ENSG00000177688|ENST00000326669|SUMO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2602233886719	2	439.260728	876.506903	0.19624	8.6201E-05	-1.4224	-0.00062482	-1.2262	-0.00053861	439.25969868724764	58.238	0.69154	58.329	57.944	58.635	0.091217					45	18	4	0	0	0	0.05872	2	6510	6510;6520		172.03	56.572	1	3428800			21603	8764	14899	14932	24974;24975	24974					0.06370990248422004
GSWDGTLRL	9	Unmodified	_GSWDGTLRL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7622375488281	2	502.761623	1003.50869	0.3032	0.00015244	-0.48224	-0.00024245	-0.17905	-9.0018E-05	502.76131675255215	63.426	1.0776	63.426	63.09	64.168	0					84	29	4	0	0	0	0.091713	3	7409	7409;7421;7434		113.41	38.242	1	8915700			21604	10362	14900	14933	24976;24977;24978	24976					0.0070799926638756006
GSWDGTLRL	9	Unmodified	_GSWDGTLRL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7615966796875	2	502.761623	1003.50869	-0.025563	-1.2852E-05	-0.20385	-0.00010249	-0.22941	-0.00011534	502.76145104293823	63.639	0.86402	63.387	63.048	63.912	-0.25141					76	23	4	0	0	0	0.091713	1	7416	7416		113.41	36.094	1	7724700			21605	10362	14900	14933	24979	24979					0.0070799926638756006
GSWDGTLRL	9	Unmodified	_GSWDGTLRL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.76171875	2	502.761623	1003.50869	1.5196	0.000764	-1.7825	-0.00089618	-0.26292	-0.00013219	502.76066080908396	63.412	1.0349	63.466	63.126	64.161	0.054104					89	28	4	0	0	0	0.14024	2	7332	7332;7357		101.6	26.557	1	7960200			21606	10362	14900	14933	24980;24981	24980					0.0070799926638756006
GSWDGTLRLW	10	Unmodified	_GSWDGTLRLW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.8012084960938	2	595.80128	1189.58801	0.013272	7.9072E-06	-0.57672	-0.00034361	-0.56344	-0.0003357	595.8009854343331	79.253	1.904	79.007	78.695	80.599	-0.2465					125	45	5	0	0	0	0.020911	7	9481	9436;9446;9458;9469;9481;9495;9509		162.25	77.092	1	15454000			21607	10362	14901	14934	24982;24983;24984;24985;24986;24987;24988	24986					0.0007964622052440973
GSWDGTLRLW	10	Unmodified	_GSWDGTLRLW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.8012084960938	2	595.80128	1189.58801	-0.39721	-0.00023666	-0.040236	-2.3973E-05	-0.43745	-0.00026063	595.8012863085103	79.179	1.8379	78.96	78.575	80.413	-0.21923					119	43	5	0	0	0	0.0090209	6	9489	9444;9453;9465;9477;9489;9501		171.53	58.12	1	14088000			21608	10362	14901	14934	24989;24990;24991;24992;24993;24994	24993					0.0007964622052440973
GSWDGTLRLW	10	Unmodified	_GSWDGTLRLW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.8005981445312	2	595.80128	1189.58801	-0.20389	-0.00012148	-0.34528	-0.00020572	-0.54918	-0.0003272	595.801086675753	79.098	2.0485	78.948	78.519	80.568	-0.15051					128	48	5	0	0	0	0.00015242	8	9463	9416;9427;9439;9451;9463;9475;9488;9502		200.16	79.288	1	13877000			21609	10362	14901	14934	24995;24996;24997;24998;24999;25000;25001;25002	24999					0.0007964622052440973
GSWDSFLKI	9	Unmodified	_GSWDSFLKI_					0	0	0		ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000172354|P62879-2|GNB2;nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1	ENSG00000172354|ENST00000303210|GNB2	ENSG00000172354|ENST00000303210|GNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.7744750976562	2	526.7742	1051.53385	-0.5189	-0.00027334	1.7025	0.00089684	1.1836	0.0006235	526.7749593671483	80.297	1.4808	80.318	79.603	81.083	0.021439					76	35	3	0	0	0	0.28753	1	9896	9896		77.318	3.3428	1	1021400			21610	8266	14902	14935	25003	25003					0.010140540689462796
GSWLGEAQW	9	Unmodified	_GSWLGEAQW_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2401123046875	2	517.240524	1032.46649	0.051113	2.6438E-05	0.69121	0.00035752	0.74232	0.00038396	517.2404088901993	78.899	1.0144	78.644	78.297	79.312	-0.25471					63	23	4	0	0	0	0.10174	3	9400	9400;9409;9422		110.12	27.815	1	1501100			21611	6612	14903	14936	25004;25005;25006	25004					-0.04843976142001338
GSWLGEAQW	9	Unmodified	_GSWLGEAQW_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2401733398438	2	517.240524	1032.46649	0.34869	0.00018036	0.24162	0.00012498	0.59031	0.00030533	517.2402763564348	78.82	1.1379	78.589	78.26	79.398	-0.23141					80	26	5	0	0	0	0.1158	3	9413	9403;9413;9427		107.01	24.702	1	1574100			21612	6612	14903	14936	25007;25008;25009	25008					-0.04843976142001338
GSWLGEAQW	9	Unmodified	_GSWLGEAQW_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2401733398438	2	517.240524	1032.46649	0.16192	8.3754E-05	0.56914	0.00029438	0.73106	0.00037813	517.2402696410371	78.73	1.0195	78.574	78.212	79.231	-0.15591					72	23	5	0	0	0	0.10174	3	9385	9375;9385;9400		110.12	16.924	1	1435500			21613	6612	14903	14936	25010;25011;25012	25011					-0.04843976142001338
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.2895202636719	2	475.289485	948.564418	1.5474	0.00073544	-0.97528	-0.00046354	0.57207	0.0002719	475.28887377049404	58.846	1.3878	58.846	58.056	59.444	0					95	37	4	0	0	0	0.2101	4	6671	6671;6680;6692;6705		87.696	26.716	1	9033000			21614	1366;7106	14904	14937	25013;25014;25015;25016	25013					0.08807832454010622
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.29022216796875	2	475.289485	948.564418	2.0211	0.00096059	-1.481	-0.00070389	0.54008	0.00025669	475.2886468791314	59.049	1.3031	58.862	58.173	59.476	-0.18705					88	35	4	0	0	0	0.28753	2	6701	6689;6701		77.318	23.966	1	10702000			21615	1366;7106	14904	14937	25017;25018	25018					0.08807832454010622
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2898254394531	2	475.289485	948.564418	0.71579	0.00034021	-0.17753	-8.438E-05	0.53825	0.00025583	475.28925809516926	58.736	1.3135	58.828	58.118	59.432	0.091217					101	35	5	0	0	0	0.34489	3	6573	6573;6584;6609		69.628	22.861	1	9270100			21616	1366;7106	14904	14937	25019;25020;25021	25019					0.08807832454010622
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.289485	948.564418	0.69929	0.00033237	-0.81815	-0.00038886	-0.11886	-5.6492E-05	475.28892470278606	59.404	0.45101	59.213	58.975	59.426	-0.19102	0.20784	4.656E-05	NaN	87.696	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136150			21617	1366;7106	14904	14937							0.08807832454010622
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.289485	948.564418	0.52705	0.0002505	-1.0224	-0.00048596	-0.4954	-0.00023546	475.2888901634395	59.302	0.44368	59.121	58.952	59.395	-0.18133	0.11521	-0.00014764	NaN	87.696	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153830			21618	1366;7106	14904	14937							0.08807832454010622
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.289485	948.564418	0.33425	0.00015886	-0.79434	-0.00037754	-0.46009	-0.00021868	475.28908101180855	59.412	0.44682	59.163	59.01	59.457	-0.24842	0.15766	6.9195E-05	NaN	87.696	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138560			21619	1366;7106	14904	14937							0.08807832454010622
GSYDGFARIW	10	Unmodified	_GSYDGFARIW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.280029296875	2	586.28018	1170.54581	-0.16327	-9.5722E-05	-0.071021	-4.1638E-05	-0.23429	-0.00013736	586.2799914698153	71.215	0.77891	70.943	70.658	71.437	-0.27184					38	17	4	0	0	0	0.26927	1	8308	8308		112.41	46.946	1	1424900			21620	2353	14905	14938	25022	25022					-0.03264329187868498
GSYDGFARIW	10	Unmodified	_GSYDGFARIW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.2807006835938	2	586.28018	1170.54581	-0.78269	-0.00045888	0.6881	0.00040342	-0.094593	-5.5458E-05	586.2804710244383	71.186	0.75702	70.929	70.651	71.408	-0.25713					45	17	4	0	0	0	0.097953	2	8311	8311;8325		136.27	67.481	1	1832000			21621	2353	14905	14938	25023;25024	25023					-0.03264329187868498
GSYDGFARIW	10	Unmodified	_GSYDGFARIW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.2796020507812	2	586.28018	1170.54581	0.062677	3.6746E-05	-0.27529	-0.0001614	-0.21261	-0.00012465	586.2798782683243	71.075	0.65009	70.86	70.606	71.257	-0.21425					32	14	3	0	0	0	0.12043	2	8273	8273;8285		131.03	69.304	1	1657200			21622	2353	14905	14938	25025;25026	25025					-0.03264329187868498
GSYGEVFKV	9	Unmodified	_GSYGEVFKV_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2533874511719	2	493.2531	984.491647	0.88028	0.0004342	-0.67154	-0.00033124	0.20874	0.00010296	493.2526019417458	55.628	0.82064	55.628	55.319	56.139	0					57	22	4	0	0	0	0.28753	1	6154	6154		77.318	20.597	1	2530600			21623	4253	14906	14939	25027	25027					-0.0012192133942789951
GSYGEVFKV	9	Unmodified	_GSYGEVFKV_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2528076171875	2	493.2531	984.491647	-0.069196	-3.4131E-05	0.17333	8.5495E-05	0.10413	5.1364E-05	493.25299664317834	55.692	0.91078	55.536	55.227	56.138	-0.15601					56	24	4	0	0	0	0.28753	1	6148	6148		77.318	10.888	1	2371500			21624	4253	14906	14939	25028	25028					-0.0012192133942789951
GSYGEVFKV	9	Unmodified	_GSYGEVFKV_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.25299072265625	2	493.2531	984.491647	-0.99226	-0.00048943	2.6301	0.0012973	1.6378	0.00080787	493.2535358475389	55.369	1.3735	55.467	54.558	55.931	0.098015					72	37	4	0	0	0	0.22902	1	6043	6043		85.161	13.283	1	2595200			21625	4253	14906	14939	25029	25029					-0.0012192133942789951
GTAAGGSG	8	Unmodified	_GTAAGGSG_					0	0	0		ENSG00000079931|ENST00000367963|MOXD1	ENSG00000079931|ENST00000367963|MOXD1	ENSG00000079931|ENST00000367963|MOXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2854614257812	1	577.257631	576.250354	-0.73146	-0.00042224	-0.99449	-0.00057407	-1.7259	-0.00099632	577.256245369114	28.864	0.21237	28.715	28.572	28.784	-0.14952					6	4	2	0	0	0	0.027866	1	1689	1689		17.365	3.5896	1	44080			21626	1678	14907	14940	25030	25030					-0.054721122558476054
GTAAVFNAVNW	11	Unmodified	_GTAAVFNAVNW_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.2893676757812	2	575.288005	1148.56146	0.25021	0.00014394	0.62572	0.00035997	0.87593	0.00050391	575.2879805528306	80.377	0.69994	80.139	79.831	80.531	-0.23783					42	16	3	0	0	0	0.00042955	2	9623	9611;9623		155.58	72.834	1	1093200			21627	3253	14908	14941	25031;25032	25032					-0.006880426708221421
GTAAVFNAVNW	11	Unmodified	_GTAAVFNAVNW_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.2931518554688	2	575.288005	1148.56146	0.027228	1.5664E-05	0.53406	0.00030724	0.56129	0.0003229	575.287955921658	80.322	0.74468	80.115	79.843	80.587	-0.20633					37	17	3	0	0	0	0.00023838	2	9623	9623;9634		163.15	61.29	1	928860			21628	3253	14908	14941	25033;25034	25033					-0.006880426708221421
GTAAVFNAVNW	11	Unmodified	_GTAAVFNAVNW_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.2892456054688	2	575.288005	1148.56146	-0.18121	-0.00010425	0.82718	0.00047586	0.64597	0.00037162	575.2881160350815	80.247	0.78944	80.101	79.743	80.532	-0.146					45	18	4	0	0	0	5.2252E-07	2	9608	9597;9608		177.3	92.144	1	1039200			21629	3253	14908	14941	25035;25036	25036					-0.006880426708221421
GTAEPITVTI	10	Unmodified	_GTAEPITVTI_					0	0	0		ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL;nc|ENSG00000135114|Q15646-2|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3133239746094	2	501.279315	1000.54408	-0.49153	-0.00024639	0.50488	0.00025309	0.013355	6.6944E-06	501.2795382290025	76.567	1.1085	76.339	75.704	76.813	-0.22843					77	27	5	0	0	0	0.03519	1	9405	9405		42.396	8.2236	1	6897300			21630	4863	14909	14942	25037	25037					0.04382617003534506
GTAGFVTAVI	10	Unmodified	_GTAGFVTAVI_					0	0	0			REV__ENST00000544679.1_1_12:4758292-4764109:+|nuORF	REV__ENST00000544679.1_1_12:4758292-4764109:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.26361083984375	2	468.263468	934.512382	-1.1402	-0.00053392	0.3836	0.00017963	-0.75662	-0.0003543	468.2635060539855	43.696	1.1444	43.476	43.14	44.284	-0.21938					60	31	3	0	0	0	1.0142	1	4025	4025		44.117	1.7207	1	5942200	+		21631	23922	14910	14943	25038	25038					0.04250669040231969
GTAGLLEQW	9	Unmodified	_GTAGLLEQW_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7521667480469	2	487.750724	973.486896	-0.60923	-0.00029715	0.9287	0.00045297	0.31947	0.00015582	487.7511244363818	75.847	1.2307	75.574	75.018	76.248	-0.27266					69	30	3	0	0	0	0.041068	1	8974	8974		132.76	6.9438	1	2506500			21632	9251	14911	14944	25039	25039					-0.0009080548219344564
GTAGLLEQW	9	Unmodified	_GTAGLLEQW_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7525634765625	2	487.750724	973.486896	-0.13982	-6.8199E-05	0.49638	0.00024211	0.35656	0.00017391	487.7509504093895	75.836	1.2307	75.577	74.991	76.221	-0.25866					73	30	4	0	0	0	0.067814	1	8985	8985		122.18	8.7644	1	2560900			21633	9251	14911	14944	25040	25040					-0.0009080548219344564
GTAMAVSTFR	10	Oxidation (M)	_GTAM(Oxidation (M))AVSTFR_		GTAM(1)AVSTFR		GTAM(60)AVSTFR	0	0	1		ENSG00000176919|ENST00000371634|C8G	ENSG00000176919|ENST00000371634|C8G	ENSG00000176919|ENST00000371634|C8G	MSMS	OPSCC_39_ClassI_Rep-3	3	528.75927734375	2	528.760766	1055.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.3	1	100.29	99.794	100.79	-0.0050888								0	0	0	0.68916	1	12755	12755		60.118	6.7668	1				21634	8684	14912	14945	25041	25041		364			-0.018553778138993948
GTAPAVRAGG	10	Unmodified	_GTAPAVRAGG_					0	0	0			REV__ENSG00000161849|ENST00000257951|KRT84	REV__ENSG00000161849|ENST00000257951|KRT84	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.2620544433594	2	428.735409	855.456264	-0.28709	-0.00012309	1.4449	0.00061946	1.1578	0.00049637	428.7360467613155	90.234	0.19981	90.109	90.049	90.249	-0.12512					8	4	2	0	0	0	0.03519	1	11049	11049		27.882	3.6795	1	82156	+	+	21635	19596	14913	14946	25042	25042					0.02275460923431183
GTAPVNLNI	9	Unmodified	_GTAPVNLNI_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7531433105469	2	449.753267	897.491981	0.33702	0.00015158	-0.20954	-9.424E-05	0.12749	5.7337E-05	449.75308117728633	65.475	0.98124	65.475	65.124	66.105	0					76	26	5	0	0	0	0.0085334	5	7759	7748;7759;7771;7785;7797		252.58	104.38	1	7525900			21636	5796	14914	14947	25043;25044;25045;25046;25047	25044					0.0391349838040469
GTAPVNLNI	9	Unmodified	_GTAPVNLNI_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7536315917969	2	449.753267	897.491981	0.10905	4.9047E-05	-0.076058	-3.4207E-05	0.032996	1.484E-05	449.7531500992098	65.821	0.95278	65.548	65.229	66.181	-0.27282					77	25	4	0	0	0	0.0085334	4	7788	7765;7778;7788;7800		262.97	123	1	9859900			21637	5796	14914	14947	25048;25049;25050;25051	25050					0.0391349838040469
GTAPVNLNI	9	Unmodified	_GTAPVNLNI_					0	0	0		nc|ENSG00000145216|Q6UN15-4|FIP1L1;ENST00000513975.5_1_4:54244032-54306933:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.753173828125	2	449.753267	897.491981	0.070809	3.1846E-05	0.049338	2.219E-05	0.12015	5.4036E-05	449.75318050322346	65.503	1.0135	65.541	65.152	66.166	0.037384					80	27	4	0	0	0	0.0087739	5	7687	7665;7676;7687;7699;7712		262.97	114.77	1	7668900			21638	5796	14914	14947	25052;25053;25054;25055;25056	25054					0.0391349838040469
GTAQPKQSW	9	Unmodified	_GTAQPKQSW_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.7538146972656	2	501.753798	1001.49304	-0.56864	-0.00028532	0.10424	5.2304E-05	-0.4644	-0.00023301	501.7537110255915	30.893	0.57194	30.715	30.497	31.069	-0.17818					25	13	2	0	0	0	0.14181	1	2011	2011		101.25	16.337	1	660390			21639	7370	14915	14948	25057	25057					-0.007642872506721687
GTAQPKQSW	9	Unmodified	_GTAQPKQSW_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.75384521484375	2	501.753798	1001.49304	-0.46234	-0.00023198	-0.0010117	-5.0765E-07	-0.46336	-0.00023249	501.7536771955996	30.924	0.492	30.772	30.553	31.045	-0.15231					21	11	2	0	0	0	0.48817	1	1993	1993		60.118	1.3363	1	839200			21640	7370	14915	14948	25058	25058					-0.007642872506721687
GTAQPKQSW	9	Unmodified	_GTAQPKQSW_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.753798	1001.49304	-0.3443	-0.00017275	-0.32226	-0.0001617	-0.66656	-0.00033445	501.7535431535169	31.029	0.57078	30.788	30.541	31.112	-0.24109	0.029402	-0.00018075	NaN	101.25	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607150			21641	7370	14915	14948							-0.007642872506721687
GTARATKT	8	Unmodified	_GTARATKT_					0	0	0			REV__ENSG00000046604|ENST00000261590|DSG2	REV__ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.15509033203125	2	403.229959	804.445365	0.72669	0.00029302	0.60036	0.00024208	1.3271	0.00053511	403.2318096332311	33.444	0.63263	33.244	32.771	33.404	-0.20019					21	15	2	0	0	0	0.027866	1	2315	2315		25.574	17.884	1	56563	+		21642	20115	14916	14949	25059	25059					0.03532058549137673
GTARRLRGR	9	Unmodified	_GTARRLRGR_					0	0	0		ENST00000457010.6_2_16:31470423-31470585:+|nuORF	ENST00000457010.6_2_16:31470423-31470585:+|nuORF	ENST00000457010.6_2_16:31470423-31470585:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7843017578125	2	521.820673	1041.62679	0.30756	0.00016049	2.1436	0.0011186	2.4512	0.0012791	521.8216115065607	18.976	0.59359	18.815	18.49	19.084	-0.16079					18	11	2	0	0	0	0.024541	1	331	331		0.82809	0	1	32729			21643	14605	14917	14950	25060	25060					0.1076441636553227
GTATKISNLT	10	Unmodified	_GTATKISNLT_					0	0	0			REV__nc|ENSG00000152061|B7ZAP0|RABGAP1L	REV__nc|ENSG00000152061|B7ZAP0|RABGAP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2867736816406	2	503.282389	1004.55022	-0.12441	-6.2611E-05	-0.57754	-0.00029067	-0.70195	-0.00035328	503.2821072425393	63.279	0.37239	63.021	62.75	63.122	-0.25824					14	8	2	0	0	0	0.03519	1	7141	7141		28.081	0	1	562870	+		21644	24811	14918	14951	25061	25061					0.04813135235031041
GTATLNIQW	9	Unmodified	_GTATLNIQW_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2639465332031	2	502.263999	1002.51345	-0.36114	-0.00018139	0.048451	2.4335E-05	-0.31269	-0.00015705	502.2640047998687	76.139	2.2023	75.866	74.641	76.843	-0.27266					148	53	4	0	0	0	0.013065	2	9008	8999;9008		200.16	65.346	1	12233000			21645	371	14919	14952	25062;25063	25063					0.012288834091350509
GTATLNIQW	9	Unmodified	_GTATLNIQW_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2643127441406	2	502.263999	1002.51345	-0.16865	-8.4705E-05	-0.10349	-5.1981E-05	-0.27214	-0.00013669	502.26391629121986	76.099	1.7815	75.84	75.075	76.856	-0.25866					136	43	4	0	0	0	0.014918	2	9008	9008;9018		200.16	52.114	1	11805000			21646	371	14919	14952	25064;25065	25064					0.012288834091350509
GTATLNIQW	9	Unmodified	_GTATLNIQW_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2640380859375	2	502.263999	1002.51345	-0.19843	-9.9664E-05	-0.15517	-7.7934E-05	-0.3536	-0.0001776	502.26390601611473	75.925	2.1603	75.75	74.732	76.892	-0.17548					155	52	5	0	0	0	0.016584	2	8969	8969;8978		200.16	65.346	1	12680000			21647	371	14919	14952	25066;25067	25066					0.012288834091350509
GTAVSIRIV	9	Unmodified	_GTAVSIRIV_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.2845153808594	2	458.284734	914.554916	0.026257	1.2033E-05	0.10988	5.0354E-05	0.13613	6.2387E-05	458.2846670539444	56.467	0.86404	56.467	56.174	57.038	0					68	24	4	0	0	0	0.15366	2	6303	6293;6303		98.629	18.917	1	3169300	+		21648	26683	14920	14953	25068;25069	25069					0.09422064168472843
GTAVSIRIV	9	Unmodified	_GTAVSIRIV_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.2847595214844	2	458.284734	914.554916	-0.4728	-0.00021668	0.61126	0.00028013	0.13846	6.3454E-05	458.28488608559667	56.584	0.95722	56.42	56.165	57.122	-0.16431					69	26	4	0	0	0	0.17845	2	6291	6280;6291		93.143	13.283	1	2817300	+		21649	26683	14920	14953	25070;25071	25071					0.09422064168472843
GTAVSIRIV	9	Unmodified	_GTAVSIRIV_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2845153808594	2	458.284734	914.554916	-0.15587	-7.1432E-05	0.29316	0.00013435	0.13729	6.2918E-05	458.2847664777092	56.296	0.8107	56.394	56.136	56.947	0.097893					61	22	4	0	0	0	0.10174	2	6188	6188;6200		110.12	25.204	1	2963000	+		21650	26683	14920	14953	25072;25073	25072					0.09422064168472843
GTAVSIRIV	9	Unmodified	_GTAVSIRIV_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	458.284734	914.554916	0.026257	1.2033E-05	0.10988	5.0354E-05	0.13613	6.2387E-05	458.2846670539444	56.467	0.86404	56.467	56.174	57.038	0	0.039856	-0.00019548	NaN	110.12	68	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3169300	+		21651	26683	14920	14953							0.09422064168472843
GTAVSIRIV	9	Unmodified	_GTAVSIRIV_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	458.284734	914.554916	-0.4728	-0.00021668	0.61126	0.00028013	0.13846	6.3454E-05	458.28488608559667	56.584	0.95722	56.42	56.165	57.122	-0.16431	-0.0071092	0.00026408	NaN	110.12	69	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2817300	+		21652	26683	14920	14953							0.09422064168472843
GTAVSIRIV	9	Unmodified	_GTAVSIRIV_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	458.284734	914.554916	-0.15587	-7.1432E-05	0.29316	0.00013435	0.13729	6.2918E-05	458.2847664777092	56.296	0.8107	56.394	56.136	56.947	0.097893	-0.032747	-2.7484E-05	NaN	110.12	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2963000	+		21653	26683	14920	14953							0.09422064168472843
GTAYLIPF	8	Unmodified	_GTAYLIPF_					0	0	0		ENST00000494188.1_1_2:65357039-65357216:-|nuORF	ENST00000494188.1_1_2:65357039-65357216:-|nuORF	ENST00000494188.1_1_2:65357039-65357216:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.756103515625	2	441.242004	880.469455	-0.2616	-0.00011543	-4.045	-0.0017848	-4.3066	-0.0019003	441.2399876225682	45.223	0.68144	45.223	44.898	45.58	0					25	19	2	0	0	0	0.027866	1	4367	4367		13.775	0	1	223280			21654	15521	14921	14954	25074	25074					0.024438989828126978
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.2894897460938	2	540.290214	1078.56587	-0.56828	-0.00030704	-0.31505	-0.00017022	-0.88333	-0.00047725	540.2900910186012	66.468	0.72925	66.22	65.782	66.511	-0.24839					70	19	6	0	0	0	0.16638	3	7633	7599;7633;7647		95.815	23.938	1	20270000			21655	719	14922	14955	25075;25076;25077	25076					0.02973421752108152
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.2901000976562	2	540.290214	1078.56587	-0.87513	-0.00047282	0.10246	5.5356E-05	-0.77267	-0.00041747	540.2903040834815	66.426	0.73415	66.202	65.824	66.558	-0.22374					72	19	6	0	0	0	0.077175	4	7624	7600;7612;7624;7649		118.74	36.503	1	21277000			21656	719	14922	14955	25078;25079;25080;25081	25080					0.02973421752108152
GTDELRLLY	9	Unmodified	_GTDELRLLY_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.2896728515625	2	540.290214	1078.56587	-1.327	-0.00071697	0.48163	0.00026022	-0.84539	-0.00045675	540.2905370597797	66.431	0.77308	66.186	65.772	66.545	-0.24517					74	21	6	0	0	0	0.2101	5	7600	7590;7600;7611;7623;7636		87.696	10.922	1	22503000			21657	719	14922	14955	25082;25083;25084;25085;25086	25083					0.02973421752108152
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.7456665039062	2	551.743628	1101.4727	-0.42734	-0.00023578	0.84488	0.00046616	0.41754	0.00023038	551.7439100360634	39.629	0.93139	39.406	39.111	40.043	-0.22311					60	23	4	0	0	0	0.75651	1	3360	3360		63.534	24.728	1	3426300			21658	2846	14923	14956	25087	25087					-0.07397502701132908
GTDGGRYDVY	10	Unmodified	_GTDGGRYDVY_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.7462158203125	2	551.743628	1101.4727	-0.12178	-6.7193E-05	0.4196	0.00023151	0.29781	0.00016432	551.7437096673877	39.602	0.83638	39.376	39.059	39.896	-0.2257					60	21	4	0	0	0	0.93809	1	3348	3348		51.528	10.955	1	3532400			21659	2846	14923	14956	25088	25088					-0.07397502701132908
GTDGHPFGW	9	Unmodified	_GTDGHPFGW_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.21221923828125	2	487.211766	972.40898	-0.63372	-0.00030876	0.80805	0.00039369	0.17433	8.4935E-05	487.2120121058105	54.926	0.72924	54.78	54.459	55.188	-0.14609					54	19	4	0	0	0	0.26797	1	5864	5864		79.939	27.64	1	1917800			21660	4936	14924	14957	25089	25089					-0.07832818347571902
GTDGHPFGW	9	Unmodified	_GTDGHPFGW_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.21136474609375	2	487.211766	972.40898	0.7357	0.00035844	-0.65132	-0.00031733	0.084376	4.1109E-05	487.21133670387434	54.973	0.84624	54.767	54.431	55.277	-0.20613					58	23	4	0	0	0	0.36105	2	5850	5850;5862		68.485	11.764	1	2006400			21661	4936	14924	14957	25090;25091	25090					-0.07832818347571902
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.7381896972656	2	499.738148	997.461744	-0.12968	-6.4807E-05	-0.49184	-0.00024579	-0.62152	-0.0003106	499.73795447262677	33.728	1.4607	33.497	33.153	34.614	-0.23107					103	36	6	0	0	0	0.14199	7	2407	2407;2416;2428;2440;2453;2466;2480		101.21	38.233	1	26441000			21662	3730	14925	14958	25092;25093;25094;25095;25096;25097;25098	25092					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.73822021484375	2	499.738148	997.461744	-0.41829	-0.00020904	-0.25563	-0.00012775	-0.67392	-0.00033679	499.7380671776631	33.661	1.5191	33.461	33.094	34.613	-0.20019					104	38	5	0	0	0	0.14199	6	2394	2394;2403;2415;2427;2440;2453		101.21	40.24	1	27763000			21663	3730	14925	14958	25099;25100;25101;25102;25103;25104	25099					-0.0370886028475752
GTDGHVHLY	9	Unmodified	_GTDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.7378234863281	2	499.738148	997.461744	-1.5121	-0.00075567	0.80622	0.0004029	-0.7059	-0.00035277	499.73857884135975	33.663	1.3443	33.498	33.156	34.5	-0.16565					102	33	5	0	0	0	0.14199	6	2380	2380;2391;2403;2416;2429;2441		101.21	40.24	1	26199000			21664	3730	14925	14958	25105;25106;25107;25108;25109;25110	25105					-0.0370886028475752
GTDGKKLRI	9	Unmodified	_GTDGKKLRI_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3008728027344	2	494.300916	986.587279	0.096981	4.7938E-05	-0.41903	-0.00020712	-0.32204	-0.00015919	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.89441	1	11842	11842		32.812	2.3088	1	34796000			21665	1163	14926	14959	25111	25111					0.09344851571461277
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.7626953125	2	579.762352	1157.51015	-0.31525	-0.00018277	0.80522	0.00046684	0.48997	0.00028407	579.7627309726977	39.611	0.94814	39.446	39.153	40.101	-0.16459					101	24	6	0	0	0	0.044845	3	3371	3360;3371;3383		123.21	61.101	1	3678100			21666	6962	14927	14960	25112;25113;25114	25113					-0.062304114354901685
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.762939453125	2	579.762352	1157.51015	-0.98355	-0.00057023	1.5422	0.00089409	0.55861	0.00032386	579.7631402425245	39.747	0.81779	39.524	39.149	39.967	-0.22311					49	20	3	0	0	0	0.016619	3	3372	3372;3382;3395		131.62	74.895	1	3411200			21667	6962	14927	14960	25115;25116;25117	25115					-0.062304114354901685
GTDGQGGTFRY	11	Unmodified	_GTDGQGGTFRY_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.7625122070312	2	579.762352	1157.51015	-0.55385	-0.0003211	1.1994	0.00069539	0.6456	0.00037429	579.7629632883971	39.733	0.95949	39.503	39.237	40.197	-0.23021					90	24	5	0	0	0	0.0030965	3	3376	3364;3376;3389		148.69	93.914	1	3788400			21668	6962	14927	14960	25118;25119;25120	25119					-0.062304114354901685
GTDGYVRVW	9	Unmodified	_GTDGYVRVW_					0	0	0		ENSG00000138073|ENST00000260643|PREB;ENST00000468045.5_1_2:27354838-27356101:-|nuORF;ENST00000474802.1_1_2:27355436-27356101:-|nuORF	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.7655029296875	2	526.761623	1051.50869	0.053742	2.8309E-05	0.10423	5.4903E-05	0.15797	8.3212E-05	526.7614654142174	56.366	0.73796	56.15	55.881	56.619	-0.21607					30	18	2	0	0	0	0.26966	1	6102	6102		79.713	5.7379	1	2015700			21669	5199	14928	14961	25121	25121					-0.015000007336084309
GTDGYVRVW	9	Unmodified	_GTDGYVRVW_					0	0	0		ENSG00000138073|ENST00000260643|PREB;ENST00000468045.5_1_2:27354838-27356101:-|nuORF;ENST00000474802.1_1_2:27355436-27356101:-|nuORF	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.761623	1051.50869	-0.59121	-0.00031143	0.68756	0.00036218	0.096351	5.0754E-05	526.7617976632002	56.304	0.74956	56.147	55.82	56.569	-0.15655	-0.0083188	0.0004354	NaN	79.713	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1734900			21670	5199	14928	14961							-0.015000007336084309
GTDGYVRVW	9	Unmodified	_GTDGYVRVW_					0	0	0		ENSG00000138073|ENST00000260643|PREB;ENST00000468045.5_1_2:27354838-27356101:-|nuORF;ENST00000474802.1_1_2:27355436-27356101:-|nuORF	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.761623	1051.50869	-0.23422	-0.00012338	0.088576	4.6658E-05	-0.14565	-7.6722E-05	526.7615695302685	56.394	0.74356	56.169	55.878	56.621	-0.2248	0.013801	-0.00019564	NaN	79.713	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1843600			21671	5199	14928	14961							-0.015000007336084309
GTDKTLRTW	9	Unmodified	_GTDKTLRTW_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.289306640625	2	539.288005	1076.56146	-0.35044	-0.00018899	2.3795	0.0012832	2.029	0.0010942	539.2896266350832	34.713	0.87185	34.492	34.072	34.944	-0.22181					50	21	3	0	0	0	0.15388	3	2586	2575;2586;2600		98.582	21.808	1	2203500			21672	3150	14929	14962	25122;25123;25124	25123					0.026239573292059504
GTDKTLRTW	9	Unmodified	_GTDKTLRTW_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2891235351562	2	539.288005	1076.56146	-0.58649	-0.00031629	2.1848	0.0011783	1.5983	0.00086197	539.289677164464	34.671	0.91647	34.464	33.895	34.812	-0.20696					58	22	3	0	0	0	0.20652	2	2580	2568;2580		88.177	20.643	1	2829800			21673	3150	14929	14962	25125;25126	25126					0.026239573292059504
GTDKTLRTW	9	Unmodified	_GTDKTLRTW_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2894897460938	2	539.288005	1076.56146	-1.3653	-0.00073631	3.7774	0.0020371	2.4121	0.0013008	539.2900691933536	34.646	0.75866	34.47	34.05	34.809	-0.17557					55	18	4	0	0	0	0.43628	2	2555	2543;2555		63.534	10.489	1	2472700			21674	3150	14929	14962	25127;25128	25128					0.026239573292059504
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.27392578125	2	510.274032	1018.53351	0.20219	0.00010317	-0.3911	-0.00019957	-0.18891	-9.6397E-05	510.27380347284304	76.758	1.4273	76.49	76.008	77.436	-0.26807					89	34	5	0	0	0	0.039744	4	9109	9097;9109;9121;9134		133.81	34.599	1	7648200			21675	8381	14930	14963	25129;25130;25131;25132	25130					0.024986343491036678
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2743225097656	2	510.274032	1018.53351	0.10769	5.4951E-05	-0.35844	-0.0001829	-0.25075	-0.00012795	510.2738088160188	76.715	0.88044	76.464	76.023	76.903	-0.25163					63	20	4	0	0	0	0.043667	4	9113	9104;9113;9131;9143		131.03	37.025	1	8770500			21676	8381	14930	14963	25133;25134;25135;25136	25134					0.024986343491036678
GTDPQLLLY	9	Unmodified	_GTDPQLLLY_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2738952636719	2	510.274032	1018.53351	-0.27371	-0.00013967	0.047135	2.4052E-05	-0.22658	-0.00011562	510.2740369674799	76.601	1.2387	76.432	75.741	76.98	-0.16854					85	29	5	0	0	0	0.016871	4	9086	9069;9086;9098;9110		152.47	46.055	1	8301800			21677	8381	14930	14963	25137;25138;25139;25140	25138					0.024986343491036678
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000521361.5_1_6:112040873-112041254:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2277526855469	2	508.227613	1014.44067	-0.40257	-0.0002046	-0.44065	-0.00022395	-0.84322	-0.00042855	508.2273788419478	30.486	1.0891	30.242	29.862	30.951	-0.24415					79	25	5	0	0	0	0.067814	4	1937	1937;1948;1960;1972		122.18	47.659	1	8442100			21678	881	14931	14964	25141;25142;25143;25144	25141					-0.06596870384282738
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000521361.5_1_6:112040873-112041254:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2275390625	2	508.227613	1014.44067	-0.86091	-0.00043754	-0.035131	-1.7855E-05	-0.89604	-0.00045539	508.2275828385393	30.389	1.0879	30.211	29.824	30.912	-0.17818					78	25	5	0	0	0	0.021872	5	1935	1913;1924;1935;1947;1962		148.04	66.327	1	8515800			21679	881	14931	14964	25145;25146;25147;25148;25149	25147					-0.06596870384282738
GTDPTPQHY	9	Unmodified	_GTDPTPQHY_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000521361.5_1_6:112040873-112041254:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2276916503906	2	508.227613	1014.44067	-0.26069	-0.00013249	-0.67624	-0.00034369	-0.93693	-0.00047618	508.22724004317183	30.319	1.0991	30.169	29.75	30.849	-0.14952					83	25	5	0	0	0	0.03849	4	1899	1887;1899;1911;1924		134.81	80.034	1	7755100			21680	881	14931	14964	25150;25151;25152;25153	25151					-0.06596870384282738
GTDRNAYVW	9	Unmodified	_GTDRNAYVW_					0	0	0		ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	ENST00000484600.6_1_7:98983337-98987636:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.256103515625	2	541.256705	1080.49886	-1.312	-0.00071014	0.57041	0.00030874	-0.74161	-0.0004014	541.2570153814983	48.619	1.2751	48.343	47.89	49.165	-0.27598					102	34	5	0	0	0	0.14024	4	4840	4815;4828;4840;4853		101.6	32.814	1	16633000			21681	4419	14932	14965	25154;25155;25156;25157	25156					-0.03817188739026278
GTEEIIVK	8	Unmodified	_GTEEIIVK_					0	0	0			REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3	REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7457275390625	2	444.755475	887.496398	-0.33007	-0.0001468	2.855	0.0012698	2.5249	0.001123	444.75690259106705	24.733	0.17388	24.518	24.418	24.592	-0.2151					5	3	2	0	0	0	0.027866	1	1108	1108		31.955	16.313	1	39583	+		21682	19797	14933	14966	25158	25158					0.04814962803345679
GTEFTTILY	9	Unmodified	_GTEFTTILY_					0	0	0		nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000078900|O15350-10|TP73	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7661743164062	2	522.76604	1043.51753	0.020697	1.082E-05	-0.30554	-0.00015972	-0.28484	-0.0001489	522.765811847458	78.934	1.2635	78.679	78.34	79.604	-0.25471					83	29	5	0	0	0	0.06122	4	9404	9404;9415;9427;9442		124.59	56.11	1	4786800			21683	18090	14934	14967	25159;25160;25161;25162	25159					-0.0024907188781071454
GTEFTTILY	9	Unmodified	_GTEFTTILY_					0	0	0		nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000078900|O15350-10|TP73	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7659301757812	2	522.76604	1043.51753	0.36545	0.00019104	-0.6982	-0.000365	-0.33275	-0.00017395	522.7656038424459	78.903	1.2201	78.672	78.303	79.523	-0.23141					90	28	5	0	0	0	0.049585	4	9423	9411;9423;9436;9449		128.86	64.191	1	4819200			21684	18090	14934	14967	25163;25164;25165;25166	25164					-0.0024907188781071454
GTEFTTILY	9	Unmodified	_GTEFTTILY_					0	0	0		nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000078900|O15350-10|TP73	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7659301757812	2	522.76604	1043.51753	0.20292	0.00010608	-0.61926	-0.00032373	-0.41633	-0.00021765	522.7656648407353	78.816	1.1862	78.66	78.254	79.44	-0.15591					80	27	5	0	0	0	0.096521	4	9403	9381;9390;9403;9415		111.65	43.164	1	4679400			21685	18090	14934	14967	25167;25168;25169;25170	25169					-0.0024907188781071454
GTEFTTVLY	9	Unmodified	_GTEFTTVLY_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.7573852539062	2	515.758215	1029.50188	-0.14206	-7.3271E-05	0.36275	0.00018709	0.22068	0.00011382	515.7582632813725	73.987	1.9245	73.71	73.174	75.099	-0.2769					126	50	4	0	0	0	0.015769	7	8714	8691;8702;8714;8721;8729;8738;8753		157.99	55.216	1	17800000			21686	1504	14935	14968	25171;25172;25173;25174;25175;25176;25177	25173					-0.011693584048543926
GTEFTTVLY	9	Unmodified	_GTEFTTVLY_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7579956054688	2	515.758215	1029.50188	0.041136	2.1216E-05	0.16622	8.5727E-05	0.20735	0.00010694	515.7581655466149	73.985	2.0156	73.72	73.178	75.193	-0.26479					117	50	4	0	0	0	0.015769	7	8733	8701;8711;8723;8733;8739;8747;8775		157.99	55.216	1	16703000			21687	1504	14935	14968	25178;25179;25180;25181;25182;25183;25184	25181					-0.011693584048543926
GTEFTTVLY	9	Unmodified	_GTEFTTVLY_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.758544921875	2	515.758215	1029.50188	0.15576	8.0333E-05	-0.27427	-0.00014146	-0.11851	-6.1125E-05	515.7579729927462	73.853	2.1344	73.662	73.085	75.219	-0.19026					123	53	5	0	0	0	0.028181	8	8685	8662;8673;8685;8697;8706;8712;8724;8736		143.02	47.82	1	21821000			21688	1504	14935	14968	25185;25186;25187;25188;25189;25190;25191;25192	25187					-0.011693584048543926
GTEFTTVLY	9	Unmodified	_GTEFTTVLY_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.758215	1029.50188	-0.63741	-0.00032875	3.9749	0.0020501	3.3374	0.0017213	515.7602429165041	73.417	0.25826	73.417	73.219	73.477	0	-0.18072	0.0037416	NaN	157.99	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160440			21689	1504	14935	14968							-0.011693584048543926
GTEFTTVLY	9	Unmodified	_GTEFTTVLY_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.758215	1029.50188	-0.30079	-0.00015513	3.7555	0.0019369	3.4547	0.0017818	515.760038495429	73.75	0.33641	73.478	73.241	73.577	-0.27126	-0.11904	0.0035153	NaN	157.99	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195180			21690	1504	14935	14968							-0.011693584048543926
GTEKRVRLAAV	11	Unmodified	_GTEKRVRLAAV_					0	0	0			REV__ENST00000568997.5_1_16:30205929-30206181:+|nuORF	REV__ENST00000568997.5_1_16:30205929-30206181:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.58087158203125	3	400.578811	1198.7146	0.70335	0.00028175	3.5435	0.0014195	4.2469	0.0017012	400.5801374909674	110.7	0.47864	110.58	110.51	110.99	-0.12525					42	17	3	0	0	0	1.09	1	13630	13630		14.086	0.57807	1	1160800	+		21691	35361	14936	14969	25193	25193					0.12319572445653648
GTEPKIKY	8	Unmodified	_GTEPKIKY_					0	0	0		ENSG00000169299|ENST00000381967|PGM2;ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000169299|ENST00000381967|PGM2;ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2633972167969	2	468.263468	934.512382	-1.1402	-0.00053392	0.3836	0.00017963	-0.75662	-0.0003543	468.2635060539855	43.696	1.1444	43.476	43.14	44.284	-0.21938					60	31	3	0	0	0	0.89627	1	4015	4015		51.335	7.2187	1	5942200			21692	7413;7925	14937	14970	25194	25194					0.04250669040231969
GTFIIVRIS	9	Unmodified	_GTFIIVRIS_					0	0	0		ENST00000378509.8_1_7:133975980-133976244:-|nuORF	ENST00000378509.8_1_7:133975980-133976244:-|nuORF	ENST00000378509.8_1_7:133975980-133976244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2713317871094	2	503.30821	1004.60187	-0.10038	-5.0522E-05	-0.49147	-0.00024736	-0.59185	-0.00029788	503.30809480312064	57.634	0.79699	57.634	57.038	57.835	0					24	20	2	0	0	0	0.024428	1	6439	6439		32.751	0	1	702840			21693	13238	14938	14971	25195	25195					0.09974923719619255
GTFTNQIHKW	10	Unmodified	_GTFTNQIHKW_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1;nc|ENSG00000244687|Q13404-1|UBE2V1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.2133483886719	3	411.212128	1230.61456	-0.65738	-0.00027032	0.54456	0.00022393	-0.11281	-4.639E-05	411.2122738186547	44.561	0.81581	44.317	43.94	44.756	-0.2444					61	21	4	0	0	0	0.67616	1	4158	4158		68.846	17.653	1	3110200			21694	10774	14939	14972	25196	25196					0.008473351118254868
GTFTNQIHKW	10	Unmodified	_GTFTNQIHKW_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1;nc|ENSG00000244687|Q13404-1|UBE2V1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.2137451171875	3	411.212128	1230.61456	-0.893	-0.00036721	0.69226	0.00028466	-0.20074	-8.2548E-05	411.21236037950695	44.554	0.74967	44.343	44.081	44.831	-0.21144					59	19	4	0	0	0	0.99657	1	4171	4171		46.457	0.48454	1	2824400			21695	10774	14939	14972	25197	25197					0.008473351118254868
GTGARGVVQL	10	Unmodified	_GTGARGVVQL_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.290283203125	2	479.277441	956.540328	0.28316	0.00013571	4.1708	0.001999	4.4539	0.0021347	479.2789983602208	47.431	0.73895	47.431	47.04	47.779	0					64	21	4	0	0	0	0.24462	2	4706	4697;4706		115.49	30.17	1	2946500	+		21696	20936	14940	14973	25198;25199	25199					0.06031992020336929
GTGATTGQEP	10	Unmodified	_GTGATTGQEP_					0	0	0		ENST00000258439.7_1_2:96918283-96918550:-|nuORF	ENST00000258439.7_1_2:96918283-96918550:-|nuORF	ENST00000258439.7_1_2:96918283-96918550:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.7106018066406	2	459.711796	917.40904	0.36398	0.00016733	-2.7942	-0.0012845	-2.4302	-0.0011172	459.7106193820645	103.01	1.0727	102.84	102.05	103.12	-0.17034					61	25	6	0	0	0	0.94316	1	12818	12818		51.193	6.6616	1	964340			21697	11423	14941	14974	25200	25200					-0.05296863138232766
GTGGFVVVLKK	11	Unmodified	_GTGGFVVVLKK_					0	0	0			REV__ENSG00000153406|ENST00000283429|NMRAL1	REV__ENSG00000153406|ENST00000283429|NMRAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8297119140625	2	552.842416	1103.67028	-0.25407	-0.00014046	2.6899	0.0014871	2.4358	0.0013466	552.8439516106374	48.879	0.17418	48.879	48.724	48.899	0					8	4	2	0	0	0	0.024727	1	4990	4990		41.427	20.48	1	469640	+		21698	24903	14942	14975	25201	25201					0.12259168299465273
GTGIHWPAG	9	Unmodified	_GTGIHWPAG_					0	0	0		ENST00000519534.1_2_16:69152354-69154331:-|nuORF	ENST00000519534.1_2_16:69152354-69154331:-|nuORF	ENST00000519534.1_2_16:69152354-69154331:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.7451477050781	2	448.224677	894.434801	-0.10023	-4.4924E-05	3.25	0.0014567	3.1497	0.0014118	448.2250690742348	47.489	0.36991	47.489	47.252	47.622	0					15	10	3	0	0	0	0.024517	1	4735	4735		3.6843	0	1	110460			21699	15955	14943	14976	25202	25202					-0.0166392410529852
GTHAGRRIE	9	Unmodified	_GTHAGRRIE_					0	0	0			REV__ENST00000595882.1_1_19:49692234-49693991:+|nuORF	REV__ENST00000595882.1_1_19:49692234-49693991:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7711486816406	2	498.770314	995.526075	0.43234	0.00021564	0.90087	0.00044933	1.3332	0.00066497	498.77066535088994	104.85	1.772	104.85	104.16	105.93	0					146	51	5	0	0	0	0.92825	1	13469	13469		30.504	3.8107	1	5167900	+		21700	35789	14944	14977	25203	25203					0.02813339592023567
GTHIKKHKTL	10	Unmodified	_GTHIKKHKTL_					0	0	0			REV__ENSG00000197472|ENST00000339986|ZNF695;REV__ENSG00000160229|ENST00000344519|ZNF66;REV__ENSG00000173041|ENST00000309683|ZNF680;REV__ENSG00000197372|ENST00000359788|ZNF675	REV__ENSG00000160229|ENST00000344519|ZNF66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.293212890625	2	581.85639	1161.69823	-0.60911	-0.00035442	3.7239	0.0021668	3.1148	0.0018124	581.8583983014906	65.073	0.85303	64.839	64.568	65.421	-0.2345					44	20	3	0	0	0	0.03519	1	7475	7475		40.058	0	1	478070	+		21701	28307;25301;26734;28297	14945	14978	25204	25204					0.12384491279544818
GTHIRYHRIL	10	Unmodified	_GTHIRYHRIL_					0	0	0			REV__ENSG00000166529|ENST00000292450|ZSCAN21	REV__ENSG00000166529|ENST00000292450|ZSCAN21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5928039550781	3	422.579034	1264.71527	-0.3039	-0.00012842	4.2443	0.0017935	3.9404	0.0016651	422.580888058084	49.785	0.31652	49.859	49.731	50.047	0.074196					12	8	2	0	0	0	0.03519	1	5104	5104		41.427	32.627	1	220100	+		21702	26031	14946	14979	25205	25205					0.09350411885361609
GTHKVTVLF	9	Unmodified	_GTHKVTVLF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2925720214844	2	501.292559	1000.57057	-0.14252	-7.1443E-05	-0.49453	-0.00024791	-0.63705	-0.00031935	501.2922924646224	45.541	1.3563	45.442	44.828	46.184	-0.099445					111	37	4	0	0	0	0.2101	3	4324	4312;4324;4336		87.696	6.5586	1	25794000			21703	9935	14947	14980	25206;25207;25208	25207					0.07030350685511166
GTHKVTVLF	9	Unmodified	_GTHKVTVLF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2920227050781	2	501.292559	1000.57057	-0.18343	-9.1952E-05	-0.45726	-0.00022922	-0.64069	-0.00032117	501.29230887612056	45.679	1.1477	45.427	44.905	46.053	-0.25252					104	31	4	0	0	0	0.2101	4	4329	4329;4341;4353;4366		87.696	7.7572	1	22111000			21704	9935	14947	14980	25209;25210;25211;25212	25209					0.07030350685511166
GTHKVTVLF	9	Unmodified	_GTHKVTVLF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29217529296875	2	501.292559	1000.57057	-0.97205	-0.00048728	0.34167	0.00017127	-0.63038	-0.000316	501.2927162977392	45.644	1.4925	45.442	44.879	46.372	-0.20226					117	41	4	0	0	0	0.28753	3	4314	4314;4336;4361		77.318	6.0219	1	23005000			21705	9935	14947	14980	25213;25214;25215	25213					0.07030350685511166
GTIGLIHAV	9	Unmodified	_GTIGLIHAV_					0	0	0		ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.7663879394531	2	440.766178	879.517802	-0.51113	-0.00022529	0.73577	0.0003243	0.22464	9.9012E-05	440.7663288308566	55.988	0.94217	56.085	55.744	56.686	0.097893					67	25	3	0	0	0	0.18276	1	6152	6152		92.191	15.344	1	2736500			21706	6399	14948	14981	25216	25216					0.07322392622711504
GTIGLIHAV	9	Unmodified	_GTIGLIHAV_					0	0	0		ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	440.766178	879.517802	-0.051826	-2.2843E-05	0.4791	0.00021117	0.42727	0.00018833	440.766213367422	56.123	0.74925	56.123	55.822	56.571	0	0.067017	-0.00013466	NaN	92.191	56	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2511100			21707	6399	14948	14981							0.07322392622711504
GTIGLIHAV	9	Unmodified	_GTIGLIHAV_					0	0	0		ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	440.766178	879.517802	-0.21446	-9.4529E-05	0.57532	0.00025358	0.36085	0.00015905	440.76629234114137	56.242	0.87107	56.086	55.778	56.649	-0.15601	0.029557	-4.9845E-05	NaN	92.191	58	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2597400			21708	6399	14948	14981							0.07322392622711504
GTIGLIHAV	9	Unmodified	_GTIGLIHAV_					0	0	0		ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	440.766178	879.517802	-0.80525	-0.00035493	2.9945	0.0013199	2.1893	0.00096496	440.76653313822203	56.148	0.61715	55.991	55.678	56.295	-0.15656	-0.065126	0.0020828	NaN	92.191	34	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336530			21709	6399	14948	14981							0.07322392622711504
GTIGLIHAV	9	Unmodified	_GTIGLIHAV_					0	0	0		ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	ENST00000512419.5_1_4:41258929-41270087:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	440.766178	879.517802	0.040879	1.8018E-05	0.422	0.00018601	0.46288	0.00020402	440.766109029803	56.212	0.7495	55.996	55.525	56.274	-0.21607	-0.060619	-0.00018499	NaN	92.191	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338190			21710	6399	14948	14981							0.07322392622711504
GTIKGQFNF	9	Unmodified	_GTIKGQFNF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.26605224609375	2	506.266542	1010.51853	0.23474	0.00011884	-0.45309	-0.00022938	-0.21835	-0.00011054	506.26624466675776	53.014	0.81713	52.887	52.511	53.329	-0.12705					38	20	2	0	0	0	0.067814	3	5518	5518;5530;5543		122.18	22.801	1	6226900			21711	2480;18139	14949	14982	25217;25218;25219	25217					0.01369187271757255
GTIKGQFNF	9	Unmodified	_GTIKGQFNF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2666320800781	2	506.266542	1010.51853	0.24346	0.00012325	-0.67967	-0.00034409	-0.43621	-0.00022084	506.2661552251179	53.197	0.76383	52.939	52.644	53.408	-0.25838					34	19	2	0	0	0	0.2101	3	5559	5547;5559;5574		87.696	16.401	1	6769600			21712	2480;18139	14949	14982	25220;25221;25222	25221					0.01369187271757255
GTIKGQFNF	9	Unmodified	_GTIKGQFNF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.2662048339844	2	506.266542	1010.51853	-0.17228	-8.7219E-05	-0.33273	-0.00016845	-0.505	-0.00025567	506.2663252119229	53.035	0.84696	52.846	52.51	53.357	-0.18982					40	21	2	0	0	0	0.020687	2	5536	5523;5536		148.99	49.612	1	7713000			21713	2480;18139	14949	14982	25223;25224	25224					0.01369187271757255
GTILYSCVQ	9	Unmodified	_GTILYSCVQ_					0	0	0		nc|ENSG00000163491|Q6ZWH5-4|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2725830078125	2	492.24696	982.479368	-0.46074	-0.0002268	-1.0945	-0.00053874	-1.5552	-0.00076554	492.24687386673094	23.485	0.29813	23.561	23.392	23.69	0.076241					9	6	2	0	0	0	0.024405	1	904	904		35.618	11.416	1	39191			21714	18446	14950	14983	25225	25225					-0.012572810741176
GTINERPEF	9	Unmodified	_GTINERPEF_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.7642822265625	2	531.764363	1061.51417	-1.0447	-0.00055553	0.28695	0.00015259	-0.75774	-0.00040294	531.7644366394144	44.898	0.60696	44.799	44.513	45.12	-0.099449					43	15	4	0	0	0	0.15366	1	4226	4226		98.629	21.855	1	1246000			21715	6278	14951	14984	25226	25226					-0.01412321941825212
GTINERPEF	9	Unmodified	_GTINERPEF_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.7640991210938	2	531.764363	1061.51417	-0.86197	-0.00045837	0.12494	6.6436E-05	-0.73704	-0.00039193	531.7642894236385	45.1	0.71483	44.847	44.508	45.223	-0.25252					36	18	4	0	0	0	0.22902	1	4236	4236		85.161	13.865	1	1322000			21716	6278	14951	14984	25227	25227					-0.01412321941825212
GTINERPEF	9	Unmodified	_GTINERPEF_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.7646484375	2	531.764363	1061.51417	-0.65175	-0.00034658	-0.29945	-0.00015924	-0.95121	-0.00050582	531.7640194038627	45.073	0.72957	44.862	44.554	45.284	-0.21109					36	19	3	0	0	0	0.077175	2	4231	4231;4242		118.74	46.036	1	1383400			21717	6278	14951	14984	25228;25229	25228					-0.01412321941825212
GTIPERPGW	9	Unmodified	_GTIPERPGW_					0	0	0		ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7636413574219	2	506.764166	1011.51378	-0.0026277	-1.3316E-06	-0.088876	-4.5039E-05	-0.091503	-4.6371E-05	506.7639938992478	49.5	0.71252	49.319	49.04	49.752	-0.18071					43	18	3	0	0	0	0.86013	1	4967	4967		35.152	1.6364	1	2254600			21718	8716	14952	14985	25230	25230					0.008483031289983956
GTIQAAPYGGW	11	Unmodified	_GTIQAAPYGGW_					0	0	0		ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3171997070312	2	560.774731	1119.53491	0.15598	8.7467E-05	0.80197	0.00044972	0.95794	0.00053719	560.7756412841712	47.394	0.73202	47.125	46.695	47.427	-0.26939					26	19	2	0	0	0	0.024795	1	4661	4661		42.864	3.6114	1	129080			21719	9194	14953	14986	25231	25231					-0.0200773156213927
GTIQAAPYGGW	11	Unmodified	_GTIQAAPYGGW_					0	0	0		ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	560.774731	1119.53491	0.22565	0.00012654	4.1626	0.0023343	4.3882	0.0024608	560.7766894532365	47.334	0.4375	47.181	46.899	47.336	-0.153	0.031325	0.00092115	NaN	42.864	16	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203650			21720	9194	14953	14986							-0.0200773156213927
GTIQAAPYGGW	11	Unmodified	_GTIQAAPYGGW_					0	0	0		ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	ENSG00000183066|ENST00000328823|WBP2NL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.774731	1119.53491	-0.70582	-0.0003958	4.2953	0.0024087	3.5895	0.0020129	561.2793409634611	47.083	0.28763	47.142	46.995	47.282	0.059097	-0.007053	0.00107	NaN	42.864	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342450			21721	9194	14953	14986							-0.0200773156213927
GTISLTLLMP	10	Unmodified	_GTISLTLLMP_					0	0	0			REV__ENSG00000214013|ENST00000318010|GANC	REV__ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3035888671875	2	523.301736	1044.58892	0.82974	0.00043421	2.4108	0.0012616	3.2405	0.0016958	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.0508	1	10337	10337		39.253	6.4404	1	3893600	+		21722	28764	14954	14987	25232	25232					0.06840724545213561
GTKESFLKRR	10	Unmodified	_GTKESFLKRR_					0	0	0		ENST00000391992.3_1_12:9181361-9181625:-|nuORF	ENST00000391992.3_1_12:9181361-9181625:-|nuORF	ENST00000391992.3_1_12:9181361-9181625:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3561401367188	2	611.356754	1220.69895	0.14541	8.89E-05	-1.0358	-0.00063326	-0.89041	-0.00054436	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.0719	1	11673	11673		36.447	6.129	1	13233000			21723	13402	14955	14988	25233	25233					0.09743285928584555
GTKGAEETSW	10	Unmodified	_GTKGAEETSW_					0	0	0		SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant;ENSG00000126461|ENST00000360565|SCAF1	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2454223632812	2	533.246003	1064.47745	-0.7458	-0.00039769	-1.8151	-0.00096789	-2.5609	-0.0013656	533.2462024890804	33.452	0.65704	33.251	32.937	33.594	-0.20019					40	16	4	0	0	0	0.13984	1	2377	2377		128.6	48.148	1	1555800			21724	4201	14956	14989	25234	25234					-0.05220618558360002
GTKGAEETSW	10	Unmodified	_GTKGAEETSW_					0	0	0		SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant;ENSG00000126461|ENST00000360565|SCAF1	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.246003	1064.47745	-0.38514	-0.00020537	0.34478	0.00018385	-0.040359	-2.1521E-05	533.2459822637878	33.381	0.67848	33.15	32.876	33.554	-0.23107	0.0021959	-0.00038258	NaN	128.6	36	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1027900			21725	4201	14956	14989							-0.05220618558360002
GTKGAEETSW	10	Unmodified	_GTKGAEETSW_					0	0	0		SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant;ENSG00000126461|ENST00000360565|SCAF1	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.246003	1064.47745	-1.0681	-0.00056958	0.99308	0.00052956	-0.075067	-4.0029E-05	533.2463725593557	33.207	0.72242	33.042	32.679	33.401	-0.16565	-0.10593	0.00030882	NaN	128.6	39	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1014900			21726	4201	14956	14989							-0.05220618558360002
GTKKPIVTQ	9	Unmodified	_GTKKPIVTQ_					0	0	0			REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.27984619140625	2	486.297842	970.581131	-0.55701	-0.00027087	-0.011725	-5.702E-06	-0.56874	-0.00027658	486.29768629392856	23.504	0.44896	23.504	23.245	23.694	0					26	10	3	0	0	0	0.024344	1	920	920		30.318	0	1	529170	+		21727	24563	14957	14990	25235	25235					0.09466333339958055
GTKKQFQKF	9	Unmodified	_GTKKQFQKF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.316162109375	2	556.316566	1110.61858	-0.53913	-0.00029993	0.24723	0.00013754	-0.2919	-0.00016239	556.3166053151966	22.763	0.54985	22.577	22.281	22.831	-0.18539					27	11	3	0	0	0	0.39228	1	839	839		66.429	11.653	1	667760			21728	5568	14958	14991	25236	25236					0.0676942460556802
GTKKQFQKF	9	Unmodified	_GTKKQFQKF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.3162231445312	2	556.316566	1110.61858	0.59724	0.00033225	-1.1844	-0.00065891	-0.58719	-0.00032666	556.3158081295506	22.748	0.64567	22.546	22.24	22.886	-0.20199					28	13	3	0	0	0	0.4752	2	811	811;822		60.972	16.965	1	665080			21729	5568	14958	14991	25237;25238	25237					0.0676942460556802
GTKYPVEW	8	Unmodified	_GTKYPVEW_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2479248046875	2	490.247818	978.481082	0.13193	6.4677E-05	-0.23604	-0.00011572	-0.10412	-5.1044E-05	490.2475869045483	53.512	0.96731	53.253	52.882	53.849	-0.25838					60	27	3	0	0	0	0.047601	5	5601	5581;5589;5601;5613;5627		186.09	84.878	1	7915200			21730	2571	14959	14992	25239;25240;25241;25242;25243	25241					-0.00901903993860742
GTKYPVEW	8	Unmodified	_GTKYPVEW_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.248046875	2	490.247818	978.481082	0.12647	6.2004E-05	1.98	0.00097071	2.1065	0.0010327	490.2475223544054	53.332	0.95411	53.142	52.793	53.747	-0.18982					110	26	7	0	0	0	0.11183	5	5550	5550;5560;5572;5584;5599		157.33	68.686	1	8818300			21731	2571	14959	14992	25244;25245;25246;25247;25248	25244					-0.00901903993860742
GTLGPWLSPL	10	Unmodified	_GTLGPWLSPL_					0	0	0			REV__ENST00000311268.7_1_12:6930714-6930912:+|nuORF	REV__ENST00000311268.7_1_12:6930714-6930912:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.26416015625	2	520.792392	1039.57023	-0.59619	-0.00031049	-4.339	-0.0022597	-4.9352	-0.0025702	520.7891858319387	56.003	0.35028	56.003	55.927	56.277	0					12	9	2	0	0	0	0.03519	1	6238	6238		40.778	0	1	140000	+		21732	30203	14960	14993	25249	25249					0.05202930965674568
GTLGPWLSPL	10	Unmodified	_GTLGPWLSPL_					0	0	0			REV__ENST00000311268.7_1_12:6930714-6930912:+|nuORF	REV__ENST00000311268.7_1_12:6930714-6930912:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.792392	1039.57023	-0.89224	-0.00046467	-4.299	-0.0022389	-5.1913	-0.0027036	520.790376756637	56.032	0.29873	55.875	55.713	56.011	-0.15656	-0.063696	1.9459E-05	NaN	40.778	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88046	+		21733	30203	14960	14993							0.05202930965674568
GTLKGHNGW	9	Unmodified	_GTLKGHNGW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.2487487792969	2	485.248683	968.482814	-0.64553	-0.00031324	0.299	0.00014509	-0.34652	-0.00016815	485.2487402651189	26.226	1.4492	25.99	25.72	27.169	-0.23603					103	37	4	0	0	0	0.096521	4	1316	1316;1325;1346;1364		111.65	53.837	1	12129000			21734	10362	14961	14994	25250;25251;25252;25253	25250					-0.0026885018523898907
GTLKGHNGW	9	Unmodified	_GTLKGHNGW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.24871826171875	2	485.248683	968.482814	-0.24399	-0.0001184	-0.20767	-0.00010077	-0.45166	-0.00021917	485.24853706938495	26.024	1.4805	25.853	25.659	27.14	-0.17078					103	38	4	0	0	0	0.082191	5	1333	1285;1296;1306;1320;1333		116.9	29.149	1	13028000			21735	10362	14961	14994	25254;25255;25256;25257;25258	25258					-0.0026885018523898907
GTLKGHNGW	9	Unmodified	_GTLKGHNGW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2486877441406	2	485.248683	968.482814	-0.79416	-0.00038536	0.43557	0.00021136	-0.35859	-0.000174	485.24876714382015	26.043	1.8404	25.88	25.674	27.514	-0.16331					120	47	4	0	0	0	0.082191	6	1321	1260;1272;1284;1297;1309;1321		116.9	50.676	1	8298000			21736	10362	14961	14994	25259;25260;25261;25262;25263;25264	25264					-0.0026885018523898907
GTLLLAPVV	9	Unmodified	_GTLLLAPVV_					0	0	0			REV__ENST00000526349.5_1_8:42716994-42725245:-|nuORF	REV__ENST00000526349.5_1_8:42716994-42725245:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7879333496094	2	441.786579	881.558604	-0.18492	-8.1696E-05	3.2582	0.0014394	3.0733	0.0013577	441.7879440468571	43.189	2.7104	43.049	42.846	45.557	-0.13929					162	77	5	0	0	0	0.97516	1	4021	4021		25.45	0	1	23376000	+		21737	34441	14962	14995	25265	25265					0.11308733942325944
GTLLQHSTW	9	Unmodified	_GTLLQHSTW_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7686157226562	2	521.769448	1041.52434	-0.91204	-0.00047587	-0.67205	-0.00035066	-1.5841	-0.00082653	521.7687042443517	52.343	0.66036	52.224	51.939	52.599	-0.11875					40	16	3	0	0	0	0.22902	3	5447	5420;5436;5447		85.161	24.189	1	2113300			21738	16521	14963	14996	25266;25267;25268	25268					0.005242857834218739
GTLLQHSTW	9	Unmodified	_GTLLQHSTW_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.767578125	2	521.769448	1041.52434	-0.24991	-0.0001304	-1.653	-0.0008625	-1.9029	-0.0009929	521.7682471073881	52.612	0.57895	52.354	52.065	52.644	-0.25838					36	14	3	0	0	0	0.14181	2	5476	5455;5476		101.25	26.998	1	2450000			21739	16521	14963	14996	25269;25270	25270					0.005242857834218739
GTLLQHSTW	9	Unmodified	_GTLLQHSTW_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.77294921875	2	521.769448	1041.52434	-0.055749	-2.9088E-05	-1.8899	-0.0009861	-1.9457	-0.0010152	521.7682300277141	52.433	0.55337	52.244	51.958	52.511	-0.18927					33	13	3	0	0	0	0.37611	2	5429	5429;5440		67.494	6.5217	1	1842200			21740	16521	14963	14996	25271;25272	25271					0.005242857834218739
GTLLQHSTW	9	Unmodified	_GTLLQHSTW_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.769448	1041.52434	-0.71289	-0.00037196	-6.3425	-0.0033093	-7.0554	-0.0036813	521.7657356342407	52.323	0.62548	52.323	52.085	52.711	0	0.031184	-0.00033546	NaN	101.25	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550990			21741	16521	14963	14996							0.005242857834218739
GTLLQHSTW	9	Unmodified	_GTLLQHSTW_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.769448	1041.52434	0.061449	3.2062E-05	-7.6479	-0.0039904	-7.5864	-0.0039584	521.7652976026448	52.454	0.38964	52.306	52.057	52.447	-0.14723	0.014486	-0.0016977	NaN	101.25	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728430			21742	16521	14963	14996							0.005242857834218739
GTLLQHSTW	9	Unmodified	_GTLLQHSTW_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.769448	1041.52434	-0.47618	-0.00024846	-6.7726	-0.0035337	-7.2487	-0.0037822	521.765459815246	52.208	0.59072	52.3	52.119	52.71	0.091938	0.0086324	-0.00078427	NaN	101.25	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363820			21743	16521	14963	14996							0.005242857834218739
GTLSGHASW	9	Unmodified	_GTLSGHASW_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8;ENST00000559940.1_1_15:78578357-78578495:-|nuORF;ENST00000559332.1_1_15:78578005-78578462:-|nuORF	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.2198181152344	2	458.219591	914.42463	-0.46547	-0.00021329	0.19587	8.9752E-05	-0.2696	-0.00012354	458.21969328613034	40.281	1.7265	40.131	39.668	41.394	-0.1497					103	45	4	0	0	0	0.022311	5	3472	3451;3460;3472;3484;3496		147.69	68.242	1	31643000			21744	5407	14964	14997	25273;25274;25275;25276;25277	25275					-0.03600531830534237
GTLSGHASW	9	Unmodified	_GTLSGHASW_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8;ENST00000559940.1_1_15:78578357-78578495:-|nuORF;ENST00000559332.1_1_15:78578005-78578462:-|nuORF	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.21978759765625	2	458.219591	914.42463	-0.21009	-9.6269E-05	-0.13351	-6.1177E-05	-0.3436	-0.00015745	458.2195491331568	40.415	1.701	40.19	39.852	41.553	-0.225					105	44	4	0	0	0	0.034181	5	3471	3463;3471;3484;3495;3507		138.24	36.642	1	31325000			21745	5407	14964	14997	25278;25279;25280;25281;25282	25279					-0.03600531830534237
GTMPLRNIF	9	Oxidation (M)	_GTM(Oxidation (M))PLRNIF_		GTM(1)PLRNIF		GTM(53)PLRNIF	0	0	1		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7810668945312	2	532.781502	1063.54845	-0.68908	-0.00036713	0.50378	0.00026841	-0.1853	-9.8723E-05	532.781667172757	57.209	1.3623	57.041	56.323	57.686	-0.1672					90	35	3	0	0	0	0.5973	1	6241	6241		52.937	10.541	1	6750600			21746	2083	14965	14998	25283	25283		76			0.01921802945435047
GTMPLRNIF	9	Oxidation (M)	_GTM(Oxidation (M))PLRNIF_		GTM(1)PLRNIF		GTM(82)PLRNIF	0	0	1		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.78125	2	532.781502	1063.54845	0.43639	0.0002325	-0.85136	-0.00045359	-0.41497	-0.00022109	532.7809430084377	59.761	2.946	59.563	58.614	61.56	-0.19742					165	73	3	0	0	0	0.2508	3	6601	6601;6613;6625		82.241	16.55	1	2755100			21747	2083	14965	14998	25284;25285;25286	25284		76			0.01921802945435047
GTMPLRNIF	9	Oxidation (M)	_GTM(Oxidation (M))PLRNIF_		GTM(1)PLRNIF		GTM(100)PLRNIF	0	0	1		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.7811889648438	2	532.781502	1063.54845	-0.22818	-0.00012157	-0.15765	-8.3994E-05	-0.38583	-0.00020556	532.7812954384673	59.632	3.9538	59.456	58.391	62.345	-0.1761					182	99	3	0	0	0	0.12602	4	6588	6578;6588;6600;6612		104.75	35.96	1	2905500			21748	2083	14965	14998	25287;25288;25289;25290	25288		76			0.01921802945435047
GTMPLRNIF	9	Oxidation (M)	_GTM(Oxidation (M))PLRNIF_		GTM(1)PLRNIF		GTM(110)PLRNIF	0	0	1		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7817993164062	2	532.781502	1063.54845	-0.28328	-0.00015093	0.66601	0.00035484	0.38273	0.00020391	532.7811873664854	59.77	3.5685	59.522	58.576	62.145	-0.24841					178	89	5	0	0	0	0.10174	3	6600	6600;6613;6624		110.12	30.669	1	2682700			21749	2083	14965	14998	25291;25292;25293	25291		76			0.01921802945435047
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.7840576171875	2	524.784044	1047.55354	-0.59167	-0.0003105	0.25893	0.00013588	-0.33274	-0.00017462	524.784140060727	65.334	1.4269	65.099	64.728	66.155	-0.2345					82	34	5	0	0	0	0.067814	5	7471	7436;7447;7459;7471;7483		122.18	45.329	1	13829000			21750	2083	14965	14999	25294;25295;25296;25297;25298	25297					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.7844848632812	2	524.784044	1047.55354	-1.3755	-0.00072183	0.91537	0.00048037	-0.46012	-0.00024146	524.784503928272	65.325	1.1875	65.122	64.697	65.885	-0.20253					76	28	5	0	0	0	0.12602	5	7438	7438;7450;7462;7474;7486		104.75	26.736	1	14992000			21751	2083	14965	14999	25299;25300;25301;25302;25303	25299					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	524.7845458984375	2	524.784044	1047.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.17	1	64.914	64.414	65.414	-0.25563								0	0	0	0.096542	1	7423	7423		93.195	32.224	1				21752	2083	14965	14999	25304	25304					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	524.7839965820312	2	524.784044	1047.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.231	1	64.98	64.48	65.48	-0.25112								0	0	0	0.031989	1	7432	7432		116.9	40.057	1				21753	2083	14965	14999	25305	25305					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	524.783935546875	2	524.784044	1047.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.306	1	65.055	64.555	65.555	-0.25112								0	0	0	0.059705	1	7443	7443		104.75	25.034	1				21754	2083	14965	14999	25306	25306					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	524.7843017578125	2	524.784044	1047.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.388	1	65.137	64.637	65.637	-0.25112								0	0	0	0.059705	1	7455	7455		104.75	24.807	1				21755	2083	14965	14999	25307	25307					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	524.78369140625	2	524.784044	1047.55354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.474	1	65.223	64.723	65.723	-0.25112								0	0	0	0.059705	1	7468	7468		104.75	30.772	1				21756	2083	14965	14999	25308	25308					0.03166106808043878
GTMPLRNIF	9	Unmodified	_GTMPLRNIF_					0	0	0		ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENSG00000099797|ENST00000215567|TECR	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	ENST00000593637.5_1_19:14674952-14675852:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.784044	1047.55354	-1.5607	-0.00081904	2.652	0.0013917	1.0913	0.00057271	524.7858075986401	64.73	0.25542	64.73	64.617	64.873	0	-0.25382	0.002091	NaN	122.18	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126070			21757	2083	14965	14999							0.03166106808043878
GTPAHQMN	8	Unmodified	_GTPAHQMN_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2621765136719	2	428.192519	854.370486	0.60807	0.00026037	0.25423	0.00010886	0.8623	0.00036923	428.19293050267237	90.239	0.23895	90.101	89.917	90.156	-0.13824					9	5	3	0	0	0	0.027866	1	11016	11016		37.159	0	1	96970			21758	1515	14966	15000	25309	25309					-0.0625244725374614
GTPEKAGRL	9	Unmodified	_GTPEKAGRL_					0	0	0			REV__ENSG00000168779|ENST00000483851|SHOX2	REV__ENSG00000168779|ENST00000483851|SHOX2	MSMS	OPSCC_39_ClassI_Rep-1	1	464.7642822265625	2	464.764166	927.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.297	1	38.297	37.797	38.797	0								0	0	0	0.15858	1	3203	3203		79.451	17.344	1		+		21759	26291	14967	15001	25310	25310					0.047123031289856954
GTPIEDLIR	9	Unmodified	_GTPIEDLIR_					0	0	0			REV__nc|ENSG00000162782|Q8NAT2|TDRD5	REV__nc|ENSG00000162782|Q8NAT2|TDRD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.26904296875	2	507.284931	1012.55531	-0.59409	-0.00030137	4.0375	0.0020482	3.4434	0.0017468	507.7901769872123	45.162	0.26318	44.951	44.793	45.056	-0.21109					8	6	2	0	0	0	0.024495	1	4224	4224		34.173	3.6689	1	76422	+		21760	36847	14968	15002	25311	25311					0.04953439097664614
GTPLCNACGIR	11	Unmodified	_GTPLCNACGIR_					0	0	0		ENST00000480726.1_1_19:10415769-10416199:-|nuORF;nc|ENSG00000220201|P0C6A0-1|ZGLP1;ENSG00000220201|ENST00000707000|ZGLP1	ENST00000480726.1_1_19:10415769-10416199:-|nuORF	ENST00000480726.1_1_19:10415769-10416199:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.829833984375	2	552.768068	1103.52158	-0.97578	-0.00053938	-3.9758	-0.0021977	-4.9515	-0.0027371	552.7650712063338	48.822	0.17831	48.889	48.764	48.943	0.066795					7	4	2	0	0	0	0.024745	1	4930	4930		49.536	12.028	1	147030			21761	10607	14969	15003	25312	25312					-0.026036289374133048
GTPPKKRPRGT	11	Unmodified	_GTPPKKRPRGT_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8555908203125	2	597.856921	1193.69929	-1.6739	-0.0010008	0.44776	0.00026769	-1.2261	-0.00073306	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	0.9728	1	11704	11704		42.864	6.4175	1	4454900	+		21762	33221	14970	15004	25313	25313					0.11018705648439209
GTPPKKRPRGT	11	Unmodified	_GTPPKKRPRGT_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.857421875	2	597.856921	1193.69929	-0.39778	-0.00023782	-0.16837	-0.00010066	-0.56615	-0.00033848	598.3585984414767	90.781	2.8287	90.792	88.918	91.747	0.011276					183	67	3	0	0	0	0.97926	1	11444	11444		41.427	2.1738	1	2105300	+		21763	33221	14970	15004	25314	25314					0.11018705648439209
GTPPKKRPRGT	11	Unmodified	_GTPPKKRPRGT_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8564453125	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0075	1	11462	11462		35.152	2.3396	1	5655800	+		21764	33221	14970	15004	25315	25315					0.11018705648439209
GTQKKSKKN	9	Unmodified	_GTQKKSKKN_					0	0	0			REV__ENST00000495619.1_1_2:183822183-183829436:-|nuORF	REV__ENST00000495619.1_1_2:183822183-183829436:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8037109375	2	509.803823	1017.59309	0.56391	0.00028748	-0.9228	-0.00047045	-0.35889	-0.00018296	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.97973	1	10505	10505		24.519	0	1	3699900	+		21765	20257	14971	15005	25316	25316					0.08499950083137264
GTRHPRGLR	9	Unmodified	_GTRHPRGLR_					0	0	0		ENST00000449870.5_2_19:10802442-10802637:+|nuORF	ENST00000449870.5_2_19:10802442-10802637:+|nuORF	ENST00000449870.5_2_19:10802442-10802637:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2744750976562	2	525.307398	1048.60024	-0.23188	-0.00012181	2.1227	0.0011151	1.8908	0.00099327	525.3084866297228	34.565	0.51451	34.341	34.106	34.621	-0.22412					34	12	4	0	0	0	0.024484	1	2539	2539		37.812	5.8567	1	1269600			21766	14506	14972	15006	25317	25317					0.07788727474212465
GTRNPVRGPRR	11	Unmodified	_GTRNPVRGPRR_					0	0	0		ENST00000562760.1_1_8:95651187-95651544:-|nuORF	ENST00000562760.1_1_8:95651187-95651544:-|nuORF	ENST00000562760.1_1_8:95651187-95651544:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3690795898438	2	633.368518	1264.72248	-0.4938	-0.00031276	1.2696	0.00080415	0.77584	0.00049139	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0292	1	11808	11808		30.318	1.1477	1	9845500			21767	16850	14973	15007	25318	25318					0.1007114448577795
GTSENRVCYD	10	Unmodified	_GTSENRVCYD_					0	0	0			REV__nc|ENSG00000114251|P41221-2|WNT5A	REV__nc|ENSG00000114251|P41221-2|WNT5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.2615966796875	2	572.240395	1142.46624	-0.82489	-0.00047203	0.53822	0.00030799	-0.28667	-0.00016404	572.2398589371123	43.377	0.21403	43.151	43.061	43.275	-0.22597					7	5	2	0	0	0	0.03519	1	3969	3969		67.494	10.773	1	89665	+		21768	22112	14974	15008	25319	25319					-0.0992976392417404
GTSFLLYIPL	10	Unmodified	_GTSFLLYIPL_					0	0	0		ENST00000550513.1_1_12:53689351-53689741:+|nuORF	ENST00000550513.1_1_12:53689351-53689741:+|nuORF	ENST00000550513.1_1_12:53689351-53689741:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3125	2	562.323525	1122.6325	-0.12656	-7.117E-05	1.18	0.00066353	1.0534	0.00059236	562.3239663994193	87.714	0.98474	87.577	87.248	88.232	-0.13734					54	23	3	0	0	0	0.03519	1	10617	10617		73.975	2.679	1	618190			21769	16583	14975	15009	25320	25320					0.07608657313994627
GTSFVSGFAI	10	Unmodified	_GTSFVSGFAI_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2537841796875	2	493.2531	984.491647	0.88028	0.0004342	-0.67154	-0.00033124	0.20874	0.00010296	493.2526019417458	55.628	0.82064	55.628	55.319	56.139	0					57	22	4	0	0	0	0.82838	1	6179	6179		58.782	2.0609	1	2530600			21770	4519	14976	15010	25321	25321					-0.0012192133942789951
GTSHRWPITIL	11	Unmodified	_GTSHRWPITIL_					0	0	0		nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	nc|ENSG00000124920|Q9Y2G1-2|MYRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.2646484375	3	427.575178	1279.70371	-0.49298	-0.00021078	4.274	0.0018275	3.7811	0.0016167	427.5766052324815	54.123	0.24927	53.987	53.837	54.087	-0.13617					9	7	2	0	0	0	0.024723	1	5710	5710		25.068	0	1	71678			21771	4083	14977	15011	25322	25322					0.07504170071365479
GTSKGRLVQ	9	Unmodified	_GTSKGRLVQ_					0	0	0		ENST00000379915.4_1_15:72581750-72612068:-|nuORF	ENST00000379915.4_1_15:72581750-72612068:-|nuORF	ENST00000379915.4_1_15:72581750-72612068:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7743835449219	2	473.277441	944.540328	0.21788	0.00010312	-1.702	-0.00080552	-1.4841	-0.0007024	473.27677531344784	36.981	0.46759	37.014	36.797	37.265	0.032562					28	11	3	0	0	0	0.024397	1	2930	2930		24.519	4.5224	1	865510			21772	13288	14978	15012	25323	25323					0.06583992020330243
GTSKIKYML	9	Unmodified	_GTSKIKYML_					0	0	0			REV__ENST00000474154.5_1_2:37458848-37468954:+|nuORF	REV__ENST00000474154.5_1_2:37458848-37468954:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2326049804688	2	520.794078	1039.5736	0.088506	4.6093E-05	3.0681	0.0015979	3.1566	0.001644	520.7955666321375	45.908	0.39937	45.646	45.416	45.815	-0.26118					16	10	2	0	0	0	0.024539	1	4361	4361		35.618	15.136	1	191470	+		21773	19772	14979	15013	25324	25324					0.05539857747999122
GTSLIPLVMV	10	Oxidation (M)	_GTSLIPLVM(Oxidation (M))V_		GTSLIPLVM(1)V		GTSLIPLVM(61)V	0	0	1		ENSG00000174898|ENST00000381624|CATSPERD;nc|ENSG00000174898|Q86XM0-2|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3035888671875	2	523.301736	1044.58892	0.11837	6.1943E-05	2.9484	0.0015429	3.0668	0.0016049	523.3032736484524	85.135	2.651	85.135	83.649	86.3	0					186	62	4	0	0	0	0.79525	1	10708	10708		60.972	7.883	1	2671500			21774	8507	14980	15014	25325	25325		356			0.06840724545190824
GTSRAAFL	8	Unmodified	_GTSRAAFL_					0	0	0			REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF	REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.2128601074219	2	411.727052	821.439552	-0.77818	-0.0003204	3.5717	0.0014706	2.7935	0.0011502	411.72656153993756	44.306	0.36764	44.201	44.099	44.467	-0.10468					14	9	2	0	0	0	0.027866	1	4141	4141		35.618	10.168	1	55167	+		21775	34623	14981	15015	25326	25326					0.021689600374770635
GTSSAEVQLW	10	Unmodified	_GTSSAEVQLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2640380859375	2	539.264196	1076.51384	-0.97012	-0.00052315	0.7941	0.00042823	-0.17603	-9.4925E-05	539.264578741675	69.504	0.87731	69.237	68.912	69.789	-0.26725					45	20	3	0	0	0	0.45418	1	8061	8061		93.143	8.2277	1	1476500			21776	3625	14982	15016	25327	25327					-0.021357416616638147
GTSSAEVQLW	10	Unmodified	_GTSSAEVQLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2638549804688	2	539.264196	1076.51384	-0.15574	-8.3985E-05	-0.058105	-3.1334E-05	-0.21384	-0.00011532	539.2641950416331	69.428	0.95074	69.177	68.782	69.732	-0.25063					59	22	4	0	0	0	0.40114	2	8058	8058;8070		98.582	23.97	1	1741500			21777	3625	14982	15016	25328;25329	25328					-0.021357416616638147
GTSSAEVQLW	10	Unmodified	_GTSSAEVQLW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.263427734375	2	539.264196	1076.51384	-1.0416	-0.0005617	0.62363	0.0003363	-0.41797	-0.00022539	539.2645935166826	69.432	1.0744	69.209	68.894	69.969	-0.22245					59	25	4	0	0	0	0.40114	1	8048	8048		98.582	16.341	1	1790300			21778	3625	14982	15016	25330	25330					-0.021357416616638147
GTSSVARAW	9	Unmodified	_GTSSVARAW_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.7403564453125	2	467.740691	933.466829	-0.62321	-0.0002915	0.75756	0.00035434	0.13435	6.2842E-05	467.74088497340125	38.263	0.97999	38.084	37.665	38.645	-0.17929					75	27	4	0	0	0	0.40693	1	3152	3152		65.465	13.938	1	3323400			21779	5339;735	14983	15017	25331	25331					-0.0025655642215269836
GTSSVARAW	9	Unmodified	_GTSSVARAW_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7402648925781	2	467.740691	933.466829	-0.67565	-0.00031603	0.57099	0.00026708	-0.10466	-4.8953E-05	467.74086671155635	38.282	0.95951	38.061	37.797	38.757	-0.22149					72	26	4	0	0	0	0.40693	1	3157	3157		65.465	5.5346	1	3602900			21780	5339;735	14983	15017	25332	25332					-0.0025655642215269836
GTSSVARAW	9	Unmodified	_GTSSVARAW_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000139514|ENST00000380752|SLC7A1;ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.7400207519531	2	467.740691	933.466829	-0.7477	-0.00034973	0.65949	0.00030847	-0.088209	-4.1259E-05	467.7408582395764	38.293	0.74168	38.075	37.828	38.569	-0.21849					64	20	4	0	0	0	0.30449	1	3138	3138		75.043	15.113	1	3506800			21781	5339;735	14983	15017	25333	25333					-0.0025655642215269836
GTTTLAFKF	9	Unmodified	_GTTTLAFKF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8;ENST00000484003.1_1_6:32810548-32812193:-|nuORF	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2708435058594	2	493.271293	984.528032	-0.23713	-0.00011697	-0.070354	-3.4704E-05	-0.30748	-0.00015167	493.27110022279084	64.6	0.91795	64.398	64.105	65.023	-0.20254					59	22	4	0	0	0	0.34489	1	7364	7364		69.628	14.851	1	2965200			21782	10320	14984	15018	25334	25334					0.03514955557284338
GTTTLAFKF	9	Unmodified	_GTTTLAFKF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8;ENST00000484003.1_1_6:32810548-32812193:-|nuORF	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2716064453125	2	493.271293	984.528032	-0.47338	-0.0002335	0.15101	7.449E-05	-0.32236	-0.00015901	493.27119712094833	64.66	0.82652	64.404	64.115	64.941	-0.25562					57	20	4	0	0	0	0.19099	1	7349	7349		90.37	5.0103	1	3105900			21783	10320	14984	15018	25335	25335					0.03514955557284338
GTTVQRQR	8	Unmodified	_GTTVQRQR_					0	0	0			REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.810791015625	2	473.264865	944.515176	0.58853	0.00027853	-1.6605	-0.00078584	-1.0719	-0.00050731	473.26512547941013	21.57	0.47882	21.392	21.209	21.688	-0.17721					19	9	3	0	0	0	0.027866	1	698	698		25.45	18.257	1	45948	+		21784	26215	14985	15019	25336	25336					0.040699372177641635
GTTVQRQR	8	Unmodified	_GTTVQRQR_					0	0	0			REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.264865	944.515176	-0.005769	-2.7303E-06	-1.4844	-0.0007025	-1.4901	-0.00070523	473.26527231319625	21.731	0.43458	21.54	21.324	21.758	-0.19072	0.08011	-0.0019503	NaN	25.45	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43340	+		21785	26215	14985	15019							0.040699372177641635
GTVALLRTTGK	11	Unmodified	_GTVALLRTTGK_					0	0	0			REV__ENSG00000124608|ENST00000244571|AARS2	REV__ENSG00000124608|ENST00000244571|AARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3237915039062	2	558.840405	1115.66626	0.58595	0.00032745	-1.4862	-0.00083057	-0.90029	-0.00050312	558.8398829390334	99.287	0.96729	99.152	98.457	99.424	-0.13526					39	23	2	0	0	0	0.024727	1	12244	12244		20.837	0	1	64910	+		21786	22778	14986	15020	25337	25337					0.1130507880575351
GTVITPDTW	9	Unmodified	_GTVITPDTW_					0	0	0		ENSG00000119878|ENST00000238892|CRIPT;ENST00000486447.1_1_2:46844062-46851363:+|nuORF	ENSG00000119878|ENST00000238892|CRIPT	ENSG00000119878|ENST00000238892|CRIPT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.25030517578125	2	495.250557	988.486562	-1.1345	-0.00056188	1.0827	0.0005362	-0.051839	-2.5673E-05	495.25099400720813	68.746	1.5625	68.484	68.021	69.584	-0.26166					79	37	4	0	0	0	0.13494	1	7961	7961		102.77	15.019	1	3800400			21787	3770	14987	15021	25338	25338					-0.00814225202043417
GTVITPDTW	9	Unmodified	_GTVITPDTW_					0	0	0		ENSG00000119878|ENST00000238892|CRIPT;ENST00000486447.1_1_2:46844062-46851363:+|nuORF	ENSG00000119878|ENST00000238892|CRIPT	ENSG00000119878|ENST00000238892|CRIPT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2505798339844	2	495.250557	988.486562	0.37103	0.00018375	-0.58216	-0.00028832	-0.21113	-0.00010456	495.25019892971693	68.732	1.2561	68.489	68.11	69.366	-0.24277					78	30	4	0	0	0	0.20967	2	7961	7961;7974		87.754	13.648	1	4921500			21788	3770	14987	15021	25339;25340	25339					-0.00814225202043417
GTVKVKLR	8	Unmodified	_GTVKVKLR_					0	0	0		ENSG00000164619|ENST00000649409|BMPER	ENSG00000164619|ENST00000649409|BMPER	ENSG00000164619|ENST00000649409|BMPER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7908935546875	2	450.803094	899.591636	0.33312	0.00015017	-1.3389	-0.00060359	-1.0058	-0.00045342	450.8024500363272	19.978	0.52732	19.81	19.522	20.049	-0.16774					16	10	2	0	0	0	0.027866	1	510	510		71.877	8.5712	1	28411			21789	7300	14988	15022	25341	25341					0.1378236078504642
GTVLKIITF	9	Unmodified	_GTVLKIITF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|9|fusion	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.31280517578125	2	496.312961	990.611368	-0.31043	-0.00015407	0.11931	5.9215E-05	-0.19112	-9.4857E-05	496.312941282455	73.738	0.64169	73.461	73.174	73.816	-0.2769					50	17	4	0	0	0	0.01388	5	8657	8657;8669;8679;8690;8705		195.06	67.458	1	8319400			21790	893;3727	14989	15023	25342;25343;25344;25345;25346	25342					0.11568692005118919
GTVLKIITF	9	Unmodified	_GTVLKIITF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|9|fusion	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.3131408691406	2	496.312961	990.611368	-0.23001	-0.00011416	0.08188	4.0638E-05	-0.14813	-7.3517E-05	496.3129154435688	73.733	0.62192	73.468	73.139	73.761	-0.26479					53	15	5	0	0	0	0.01388	5	8677	8666;8677;8688;8700;8713		180.87	47.057	1	7191200			21791	893;3727	14989	15023	25347;25348;25349;25350;25351	25348					0.11568692005118919
GTVLKIITF	9	Unmodified	_GTVLKIITF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|9|fusion	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.3132019042969	2	496.312961	990.611368	-0.28438	-0.00014114	-0.030905	-1.5339E-05	-0.31529	-0.00015648	496.31286447375015	73.565	0.67532	73.375	73.047	73.722	-0.19026					58	16	5	0	0	0	0.015512	5	8629	8629;8639;8649;8661;8676		159.28	40.899	1	6431400			21792	893;3727	14989	15023	25352;25353;25354;25355;25356	25352					0.11568692005118919
GTVLRLQQ	8	Unmodified	_GTVLRLQQ_					0	0	0		nc|ENSG00000100483|Q9H867-3|VCPKMT;ENST00000484763.1_1_14:50583003-50583270:-|nuORF;nc|ENSG00000100483|Q9H867-1|VCPKMT;nc|ENSG00000100483|Q9H867-5|VCPKMT;ENSG00000100483|ENST00000395860|VCPKMT	nc|ENSG00000100483|Q9H867-3|VCPKMT	nc|ENSG00000100483|Q9H867-3|VCPKMT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.7753601074219	2	457.774534	913.534515	0.72701	0.00033281	-0.77499	-0.00035477	-0.047975	-2.1962E-05	457.7741246146161	20.946	0.49212	21.015	20.759	21.251	0.068901					23	9	4	0	0	0	1.0574	1	559	559		21.96	0	1	125350			21793	2207	14990	15024	25357	25357					0.07428893508654255
GTYGVRAAW	9	Unmodified	_GTYGVRAAW_					0	0	0		ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.7510986328125	2	490.751059	979.487565	-0.2577	-0.00012647	0.24523	0.00012035	-0.012473	-6.121E-06	490.7510559462212	49.803	0.9363	49.698	49.373	50.309	-0.10558					65	24	4	0	0	0	0.17822	3	5016	5016;5028;5040		93.195	35.384	1	5331300			21794	2919	14991	15025	25358;25359;25360	25358					-0.0029996604248481162
GTYGVRAAW	9	Unmodified	_GTYGVRAAW_					0	0	0		ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7512512207031	2	490.751059	979.487565	0.14596	7.1632E-05	-0.16589	-8.1412E-05	-0.019927	-9.7794E-06	490.7508697660465	50.102	0.96722	49.822	49.51	50.477	-0.27977					64	25	4	0	0	0	0.17822	3	5063	5051;5063;5074		93.195	32.902	1	6064300			21795	2919	14991	15025	25361;25362;25363	25362					-0.0029996604248481162
GTYGVRAAW	9	Unmodified	_GTYGVRAAW_					0	0	0		ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.75067138671875	2	490.751059	979.487565	0.63294	0.00031062	-0.5631	-0.00027634	0.069845	3.4277E-05	490.7506483451084	49.919	0.96991	49.738	49.383	50.353	-0.18071					67	25	4	0	0	0	0.15366	3	5051	5028;5040;5051		98.629	40.818	1	5705400			21796	2919	14991	15025	25364;25365;25366	25366					-0.0029996604248481162
GTYSGKAADVW	11	Unmodified	_GTYSGKAADVW_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.77734375	2	577.77747	1153.54039	-0.47443	-0.00027411	-0.058055	-3.3543E-05	-0.53248	-0.00030766	577.7773842882794	46.849	0.97045	46.58	46.267	47.238	-0.26939					79	26	5	0	0	0	0.054972	3	4523	4523;4534;4548		120.27	0	1	6437400			21797	8367	14992	15026	25367;25368;25369	25367					-0.030240527703654152
GTYSGKAADVW	11	Unmodified	_GTYSGKAADVW_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.7769775390625	2	577.77747	1153.54039	-0.85614	-0.00049466	0.41187	0.00023797	-0.44427	-0.00025669	577.7776175920029	46.665	1.0297	46.471	46.202	47.232	-0.19387					77	28	4	0	0	0	0.082489	3	4493	4493;4506;4517		112.3	0	1	6125000			21798	8367	14992	15026	25370;25371;25372	25370					-0.030240527703654152
GTYSGQIVLW	10	Unmodified	_GTYSGQIVLW_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.292724609375	2	562.292756	1122.57096	0.47223	0.00026553	-0.91151	-0.00051253	-0.43928	-0.00024701	562.2921284042629	82.633	0.91035	82.413	82.13	83.04	-0.22015					58	20	4	0	0	0	0.020911	4	9955	9934;9943;9955;9969		162.25	58.196	1	3017800			21799	1610	14993	15027	25373;25374;25375;25376	25375					0.014577256146822037
GTYSGQIVLW	10	Unmodified	_GTYSGQIVLW_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2931518554688	2	562.292756	1122.57096	0.21038	0.0001183	-0.73503	-0.0004133	-0.52465	-0.00029501	562.2922715303728	82.62	0.9937	82.44	82.114	83.107	-0.18079					59	22	4	0	0	0	0.020911	4	9948	9948;9957;9969;9984		162.25	59.893	1	3149400			21800	1610	14993	15027	25377;25378;25379;25380	25377					0.014577256146822037
GTYSGQIVLW	10	Unmodified	_GTYSGQIVLW_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2926025390625	2	562.292756	1122.57096	-0.72243	-0.00040622	0.21278	0.00011964	-0.50966	-0.00028658	562.2927545126057	82.604	1.2514	82.464	82.13	83.381	-0.14014					87	28	5	0	0	0	0.01976	4	9942	9922;9931;9942;9955		163.15	70.008	1	2809000			21801	1610	14993	15027	25381;25382;25383;25384	25383					0.014577256146822037
GVAAAKAGMN	10	Unmodified	_GVAAAKAGMN_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.25103759765625	2	445.231645	888.448736	-0.27387	-0.00012194	0.56054	0.00024957	0.28667	0.00012763	445.23178223977044	30.424	1.9047	30.433	29.433	31.337	0.0086708					64	45	2	0	0	0	0.03519	1	1795	1795		10.866	2.0432	1	213760			21802	2368	14994	15028	25385	25385					4.985331497664447E-05
GVAAAKAGMN	10	Unmodified	_GVAAAKAGMN_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	445.231645	888.448736	-1.1132	-0.00049563	1.4045	0.00062532	0.29129	0.00012969	445.2321350692693	30.425	1.6434	30.425	29.487	31.131	0	0.033084	0.00033324	NaN	10.866	62	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215910			21803	2368	14994	15028							4.985331497664447E-05
GVAAAKAGMN	10	Unmodified	_GVAAAKAGMN_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	445.231645	888.448736	-0.81338	-0.00036214	1.1113	0.00049479	0.29794	0.00013265	445.2320341895616	30.243	1.5218	30.317	29.523	31.045	0.074314	-0.074559	7.2175E-05	NaN	10.866	59	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244410			21804	2368	14994	15028							4.985331497664447E-05
GVAAPPSPLL	10	Unmodified	_GVAAPPSPLL_					0	0	0			REV__nc|ENSG00000152359|Q8NA72-3|POC5	REV__nc|ENSG00000152359|Q8NA72-3|POC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7644348144531	2	461.273835	920.533118	0.02462	1.1357E-05	-0.53089	-0.00024488	-0.50627	-0.00023353	461.2724768075008	21.559	0.32985	21.63	21.451	21.781	0.071487					13	6	3	0	0	0	0.03519	1	637	637		47.916	9.1095	1	35928	+		21805	24834	14995	15029	25386	25386					0.06967259419900529
GVACNVGGPGP	11	Unmodified	_GVACNVGGPGP_					0	0	0			REV__ENSG00000177425|ENST00000328827|PAWR	REV__ENSG00000177425|ENST00000328827|PAWR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7586669921875	2	464.221277	926.428001	-0.22014	-0.0001022	0.33285	0.00015452	0.11271	5.2322E-05	464.22132257373175	53.876	0.77444	53.729	53.42	54.194	-0.14723					48	21	3	0	0	0	0.024743	1	5776	5776		35.618	7.364	1	1620600	+		21806	27112	14996	15030	25387	25387					-0.03815605048157522
GVAETLVL	8	Unmodified	_GVAETLVL_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000493339.1_1_6:43112822-43113530:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.5548095703125	2	401.239461	800.46437	0.17187	6.8962E-05	2.1314	0.00085519	2.3032	0.00092415	401.24022618125673	27.072	0.30075	27.059	26.869	27.17	-0.012983					11	7	2	0	0	0	0.027866	1	1409	1409		4.6817	0	1	47549			21807	3227	14997	15031	25388	25388					0.05615595120195849
GVAFQYTN	8	Unmodified	_GVAFQYTN_					0	0	0			REV__ENSG00000189186|ENST00000451261|DCAF8L2	REV__ENSG00000189186|ENST00000451261|DCAF8L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.74072265625	2	450.216517	898.418482	-0.87704	-0.00039486	3.607	0.0016239	2.7299	0.0012291	450.217457970093	30.613	0.16669	30.613	30.467	30.634	0					5	3	2	0	0	0	0.027866	1	1970	1970		25.45	0	1	16574	+		21808	28107	14998	15032	25389	25389					-0.034790500620488274
GVAIGLVTK	9	Unmodified	_GVAIGLVTK_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.1863098144531	2	429.276378	856.538203	-0.1508	-6.4734E-05	0.52073	0.00022354	0.36993	0.0001588	429.276416597022	25.354	0.84807	25.127	24.797	25.645	-0.22683					41	19	3	0	0	0	0.024293	1	1160	1160		12.207	1.3413	1	404480			21809	5193	14999	15033	25390	25390					0.10419563282505351
GVAIGLVTK	9	Unmodified	_GVAIGLVTK_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.18658447265625	2	429.276378	856.538203	0.13929	5.9794E-05	0.21282	9.1358E-05	0.35211	0.00015115	429.2762792849449	25.086	0.93987	24.913	24.6	25.54	-0.17247					41	21	3	0	0	0	0.024262	1	1114	1114		23.042	0	1	289570			21810	5193	14999	15033	25391	25391					0.10419563282505351
GVAIGLVTK	9	Unmodified	_GVAIGLVTK_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	429.276378	856.538203	1.0756	0.00046174	-1.1135	-0.00047799	-0.037865	-1.6255E-05	429.27575368038435	25.156	0.62917	24.984	24.777	25.406	-0.17151	-0.060549	-0.0012902	NaN	23.042	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332160			21811	5193	14999	15033							0.10419563282505351
GVAISSKTEP	10	Unmodified	_GVAISSKTEP_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2;NRDE2|p.M339Ifs*37|1|0.26|ENSG00000119720|chr14:90303114-90303115|-/A|frameshift_variant	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7720031738281	2	494.769114	987.523675	0.55104	0.00027264	-0.64643	-0.00031984	-0.095395	-4.7198E-05	494.7691710791606	33.176	0.39037	33.233	33.033	33.423	0.056568					12	10	2	0	0	0	0.03519	1	2291	2291		35.618	3.6634	1	178400			21812	3761	15000	15034	25392	25392					0.02941446343709231
GVAKNWTL	8	Unmodified	_GVAKNWTL_					0	0	0			REV__ENST00000380325.3_1_20:3028531-3028840:+|nuORF	REV__ENST00000380325.3_1_20:3028531-3028840:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.76116943359375	2	444.750527	887.486502	0.032819	1.4596E-05	-1.1784	-0.00052408	-1.1455	-0.00050948	444.7507810838009	24.062	0.35478	23.847	23.644	23.999	-0.2151					11	7	2	0	0	0	0.027866	1	1030	1030		60.294	44.652	1	38700	+		21813	31472	15001	15035	25393	25393					0.03825819588610102
GVALAPHSSK	10	Unmodified	_GVALAPHSSK_					0	0	0		ENST00000426250.3_1_12:72665898-72666905:-|nuORF	ENST00000426250.3_1_12:72665898-72666905:-|nuORF	ENST00000426250.3_1_12:72665898-72666905:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7896728515625	2	483.771991	965.529429	-0.2158	-0.0001044	-4.3512	-0.002105	-4.567	-0.0022094	483.7696842258136	47.766	0.095341	47.613	47.542	47.637	-0.15301					4	2	2	0	0	0	0.03519	1	4786	4786		47.657	28.297	1	94826			21814	14083	15002	15036	25394	25394					0.045285896460427466
GVALVVAQT	9	Unmodified	_GVALVVAQT_					0	0	0		ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	ENSG00000275395|ENST00000616721|FCGBP;FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	ENSG00000275395|ENST00000616721|FCGBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2867126464844	2	429.258185	856.501818	-0.38939	-0.00016715	0.63822	0.00027396	0.24883	0.00010681	429.2584083482618	63.247	0.35498	63.247	63.018	63.373	0					13	9	2	0	0	0	0.024381	1	7365	7365		37.159	5.2042	1	137110			21815	11039;17648	15003	15037	25395	25395					0.06782686385793113
GVAPLHLP	8	Unmodified	_GVAPLHLP_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.8657531738281	2	402.242338	802.470124	-1.3301	-0.00053503	1.0156	0.00040852	-0.3145	-0.00012651	402.2426925929891	44.309	0.75624	44.09	43.672	44.428	-0.21939					38	20	3	0	0	0	0.027866	1	4099	4099		24.504	0	1	731440			21816	10285	15004	15038	25396	25396					0.06098738422531369
GVARALPVAG	10	Unmodified	_GVARALPVAG_					0	0	0			REV__ENST00000301215.7_1_19:42728977-42729061:+|nuORF	REV__ENST00000301215.7_1_19:42728977-42729061:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7721862792969	2	455.777077	909.5396	-0.87758	-0.00039998	0.91474	0.00041692	0.037165	1.6939E-05	455.77735497918377	22.221	1.0959	22.295	21.882	22.978	0.073954					40	22	3	0	0	0	0.03519	1	743	743		47.916	21.119	1	308720	+		21817	30057	15005	15039	25397	25397					0.08121197371281141
GVARGARPG	9	Unmodified	_GVARGARPG_					0	0	0			REV__ENST00000473736.5_1_22:42172081-42174878:+|nuORF	REV__ENST00000473736.5_1_22:42172081-42174878:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.7439270019531	2	420.743568	839.472583	-0.36885	-0.00015519	0.33052	0.00013906	-0.038333	-1.6128E-05	420.74375652988215	27.567	1.6254	27.554	27.241	28.867	-0.012983					105	40	4	0	0	0	0.75282	1	1516	1516		42.474	0.078325	1	8988000	+		21818	33247	15006	15040	25398	25398					0.04642586880174804
GVARIHLL	8	Unmodified	_GVARIHLL_					0	0	0			REV__ENSG00000198715|ENST00000362007|GLMP	REV__ENSG00000198715|ENST00000362007|GLMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.2663879394531	2	439.782162	877.549771	-0.57706	-0.00025378	0.47019	0.00020678	-0.10687	-4.7E-05	439.78222459605513	43.384	0.50804	43.384	43.15	43.658	0					21	13	2	0	0	0	0.027866	1	4079	4079		29.842	0	1	347690	+		21819	28453	15007	15041	25399	25399					0.1060980509652154
GVARPPPQ	8	Unmodified	_GVARPPPQ_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	412.2303771972656	2	411.235045	820.455536	-0.20788	-8.5489E-05	2.1932	0.00090192	1.9853	0.00081643	411.2353194944667	27.415	0.76904	27.497	27.064	27.833	0.081291					34	20	2	0	0	0	0.027866	1	1440	1440		25.45	1.2474	1	903790	+		21820	27576	15008	15042	25400	25400					0.03812666274370713
GVARRPVK	8	Unmodified	_GVARRPVK_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.20721435546875	2	441.785236	881.555919	2.186	0.00096573	-1.7509	-0.00077352	0.43507	0.00019221	441.7842938662644	18.711	0.54016	18.711	18.382	18.922	0					26	10	3	0	0	0	0.027866	1	306	306		7.1934	0	1	123360	+		21821	29177	15009	15043	25401	25401					0.11040323328029444
GVARVVHS	8	Unmodified	_GVARVVHS_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.8875732421875	2	412.740494	823.466435	-0.048425	-1.9987E-05	-0.13899	-5.7365E-05	-0.18741	-7.7353E-05	412.74022762150946	27.401	0.59086	27.244	26.93	27.521	-0.15664					19	13	2	0	0	0	0.027866	1	1516	1516		14.664	5.8418	1	83102			21822	824	15010	15044	25402	25402					0.047640686486602135
GVARYGVK	8	Unmodified	_GVARYGVK_					0	0	0		ENSG00000148218|ENST00000409155|ALAD;nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF;ENST00000468504.5_1_9:116152961-116155869:-|nuORF	ENSG00000148218|ENST00000409155|ALAD	ENSG00000148218|ENST00000409155|ALAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2630920410156	2	425.250695	848.486836	-1.1542	-0.00049083	1.5366	0.00065345	0.38242	0.00016262	425.25118538017597	38.107	0.58035	38.134	37.817	38.397	0.027275					23	16	2	0	0	0	0.027866	1	3133	3133		13.775	6.085	1	138380			21823	6010	15011	15045	25403	25403					0.056532393084808064
GVASIRSL	8	Unmodified	_GVASIRSL_					0	0	0		ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	ENSG00000148602|ENST00000372105|LRIT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.9035949707031	2	401.742702	801.470852	-0.47905	-0.00019245	0.72487	0.00029121	0.24582	9.8757E-05	401.7429489947845	30.907	0.49566	30.755	30.511	31.006	-0.15231					16	11	2	0	0	0	0.027866	1	1963	1963		38.806	1.647	1	324650			21824	6042	15012	15046	25404	25404					0.06217533071571779
GVATARPE	8	Unmodified	_GVATARPE_					0	0	0			REV__ENST00000431422.1_1_6:134758921-134824003:+|nuORF	REV__ENST00000431422.1_1_6:134758921-134824003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.8757019042969	2	400.716685	799.418816	0.26878	0.0001077	-0.16243	-6.5088E-05	0.10635	4.2616E-05	400.7165112735978	37.886	0.6418	37.664	37.348	37.99	-0.22149					46	17	4	0	0	0	0.027866	1	3025	3025		35.618	12.576	1	2351400	+		21825	32365	15013	15047	25405	25405					0.011083696577998126
GVAVEQKLSP	10	Unmodified	_GVAVEQKLSP_					0	0	0			REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.2942504882812	2	514.292756	1026.57096	0.25122	0.0001292	3.2579	0.0016755	3.5091	0.0018047	514.2942510862252	86.539	1.1111	86.539	85.998	87.109	0					44	25	2	0	0	0	0.98527	1	10890	10890		47.96	2.9373	1	1614500	+		21826	37549	15014	15048	25406	25406					0.058737256147196604
GVAVHKTV	8	Unmodified	_GVAVHKTV_					0	0	0		nc|ENSG00000064205|O76076-2|CCN5	nc|ENSG00000064205|O76076-2|CCN5	nc|ENSG00000064205|O76076-2|CCN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.7349548339844	2	405.745245	809.475937	0.78743	0.0003195	-0.066385	-2.6935E-05	0.72105	0.00029256	405.74513884888074	22.403	0.31918	22.214	22.055	22.374	-0.18894					10	6	2	0	0	0	0.027866	1	790	790		20.482	0	1	30318			21827	18061	15015	15049	25407	25407					0.06357836934182615
GVAVINKL	8	Unmodified	_GVAVINKL_					0	0	0			REV__ENSG00000152642|ENST00000282541|GPD1L	REV__ENSG00000152642|ENST00000282541|GPD1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58746337890625	2	407.263271	812.511988	0.33568	0.00013671	-0.12345	-5.0276E-05	0.21223	8.6434E-05	407.2630484087691	25.649	0.59065	25.478	25.247	25.837	-0.17078					38	14	4	0	0	0	0.027866	1	1210	1210		37.028	10.232	1	2167500	+		21828	24856	15016	15050	25408	25408					0.09823294111038194
GVAVKLIL	8	Unmodified	_GVAVKLIL_					0	0	0			REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.5789489746094	2	406.783839	811.553125	1.2063	0.00049072	2.4475	0.00099561	3.6539	0.0014863	406.7847361283698	33.683	1.4552	33.739	33.461	34.916	0.056572					44	36	2	0	0	0	0.027866	1	2513	2513		15.636	7.4049	1	74738	+		21829	30410	15017	15051	25409	25409					0.13981055150509292
GVAVRVICSD	10	Unmodified	_GVAVRVICSD_					0	0	0		ENST00000453097.6_1_12:51818651-51818756:+|nuORF	ENST00000453097.6_1_12:51818651-51818756:+|nuORF	ENST00000453097.6_1_12:51818651-51818756:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.76446533203125	2	509.771134	1017.52771	0.049927	2.5451E-05	0.79746	0.00040652	0.84739	0.00043197	509.77128543764667	25.82	0.38522	25.9	25.664	26.049	0.08009					12	8	2	0	0	0	0.03519	1	1186	1186		40.778	5.1599	1	210870			21830	14542	15018	15052	25410	25410					0.01965212565778529
GVCMYVYVY	9	Unmodified	_GVCMYVYVY_					0	0	0			REV__ENST00000433544.1_1_1:94219339-94219483:-|nuORF	REV__ENST00000433544.1_1_1:94219339-94219483:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7725830078125	2	548.745739	1095.47692	-0.62798	-0.0003446	2.7386	0.0015028	2.1107	0.0011582	549.2492452007231	35.653	0.50931	35.437	35.062	35.571	-0.21555					15	12	2	0	0	0	0.024475	1	2723	2723		29.842	6.7991	1	111650	+		21831	32409	15019	15053	25411	25411					-0.06699452803445638
GVDIKEVYLSD	11	Unmodified	_GVDIKEVYLSD_					0	0	0			REV__ENSG00000134684|ENST00000373477|YARS1	REV__ENSG00000134684|ENST00000373477|YARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.21435546875	3	413.215204	1236.62378	-0.74634	-0.0003084	-0.70378	-0.00029081	-1.4501	-0.00059921	413.2147784074748	24.778	0.79523	24.731	24.353	25.148	-0.047148					40	17	3	0	0	0	0.024735	1	1064	1064		34.087	12.306	1	194340	+		21832	23470	15020	15054	25412	25412					0.014936388868591166
GVDIKEVYLSD	11	Unmodified	_GVDIKEVYLSD_					0	0	0			REV__ENSG00000134684|ENST00000373477|YARS1	REV__ENSG00000134684|ENST00000373477|YARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	413.215204	1236.62378	0.49257	0.00020354	-2.2538	-0.00093132	-1.7613	-0.00072778	413.2141802669388	24.59	0.86655	24.668	24.138	25.005	0.078344	-0.037947	-0.00054055	NaN	34.087	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202590	+		21833	23470	15020	15054							0.014936388868591166
GVDLPPWFP	9	Unmodified	_GVDLPPWFP_					0	0	0		sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8217163085938	2	514.26601	1026.51747	-0.48506	-0.00024945	-3.6381	-0.0018709	-4.1232	-0.0021204	514.2638765085495	56.869	0.55891	56.705	56.35	56.909	-0.16431					22	15	2	0	0	0	0.024293	1	6308	6308		52.299	17.147	1	200100			21834	37931	15021	15055	25413	25413					0.005269729028441361
GVDLPPWFP	9	Unmodified	_GVDLPPWFP_					0	0	0		sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	sp|P03211|EBNA1_EBVB9Epstein-Barrnuclearantigen1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA1PE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.26601	1026.51747	0.24964	0.00012838	-3.9283	-0.0020202	-3.6787	-0.0018918	514.2630025100099	56.893	0.18965	56.691	56.557	56.747	-0.20209	0.023117	-0.00016187	NaN	52.299	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81582			21835	37931	15021	15055							0.005269729028441361
GVDMLKQI	8	Unmodified	_GVDMLKQI_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.254150390625	2	452.252046	902.489538	-0.7387	-0.00033408	4.0841	0.001847	3.3454	0.0015129	452.2540057058061	20.492	1.9325	20.492	20.127	22.06	0					105	39	5	0	0	0	0.94517	1	594	594		45.952	1.5748	1	9243800	+		21836	36907	15022	15056	25414	25414					0.0343932665111879
GVDRIQSTL	9	Unmodified	_GVDRIQSTL_					0	0	0			REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7776794433594	2	494.774731	987.534909	-0.39733	-0.00019659	1.1074	0.00054789	0.71003	0.0003513	494.7757772898421	21.206	0.86956	21.116	20.675	21.545	-0.090092					39	17	5	0	0	0	0.83071	1	645	645		37.159	0	1	2743400	+		21837	36752	15023	15057	25415	25415					0.04064268437866758
GVDSFYLEI	9	Unmodified	_GVDSFYLEI_					0	0	0		ENSG00000078902|ENST00000317204|TOLLIP;nc|ENSG00000078902|Q9H0E2-2|TOLLIP	ENSG00000078902|ENST00000317204|TOLLIP	ENSG00000078902|ENST00000317204|TOLLIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.30517578125	2	521.758215	1041.50188	-0.79992	-0.00041737	4.4504	0.002322	3.6505	0.0019047	521.7605974277087	82.402	0.59445	82.402	82.113	82.707	0					20	13	2	0	0	0	0.024381	1	10308	10308		37.159	0	1	202400			21838	1649	15024	15058	25416	25416					-0.017213584048704433
GVDTNVRIW	9	Unmodified	_GVDTNVRIW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.281982421875	2	530.282723	1058.55089	0.85456	0.00045316	0.43767	0.00023209	1.2922	0.00068525	530.2821652348465	59.736	0.85133	59.538	59.132	59.983	-0.19742					57	21	5	0	0	0	0.014918	2	6614	6614;6626		190.52	85.771	1	2712100			21839	6733	15025	15059	25417;25418	25417					0.023959746747550525
GVDTNVRIW	9	Unmodified	_GVDTNVRIW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2816162109375	2	530.282723	1058.55089	0.15406	8.1698E-05	1.6272	0.00086287	1.7813	0.00094457	530.2825139187867	59.656	0.92046	59.48	59.078	59.998	-0.1761					62	23	5	0	0	0	0.015064	2	6613	6599;6613		190.52	80.181	1	2986500			21840	6733	15025	15059	25419;25420	25420					0.023959746747550525
GVDTNVRIW	9	Unmodified	_GVDTNVRIW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2810668945312	2	530.282723	1058.55089	0.091886	4.8726E-05	-0.10872	-5.7651E-05	-0.016831	-8.9253E-06	530.28248556477	59.76	0.85933	59.512	59.05	59.909	-0.24842					50	21	4	0	0	0	0.014034	3	6625	6601;6614;6625		190.52	91.143	1	2523500			21841	6733	15025	15059	25421;25422;25423	25423					0.023959746747550525
GVEAPRARK	9	Unmodified	_GVEAPRARK_					0	0	0			REV__ENSG00000128951|ENST00000331200|DUT	REV__ENSG00000128951|ENST00000331200|DUT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2904052734375	2	492.290882	982.567212	-0.45799	-0.00022546	-0.021114	-1.0394E-05	-0.4791	-0.00023586	492.29085079942007	20.553	0.67523	20.449	20.03	20.705	-0.10477					18	13	2	0	0	0	0.75397	1	551	551		42.396	0	1	775280	+		21842	23023	15026	15060	25424	25424					0.07523100631510715
GVEGSLHAR	9	Unmodified	_GVEGSLHAR_					0	0	0		RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant;ENSG00000169397|ENST00000304639|RNASE3	RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.260009765625	2	463.246141	924.477728	-0.25785	-0.00011945	0.67635	0.00031332	0.41849	0.00019387	463.24627615183965	20.079	0.43242	19.974	19.745	20.178	-0.10477					19	8	3	0	0	0	0.85329	1	485	485		35.618	2.8059	1	127060			21843	7935	15027	15061	25425	25425					0.012468459521414843
GVEGSLHAR	9	Unmodified	_GVEGSLHAR_					0	0	0		RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant;ENSG00000169397|ENST00000304639|RNASE3	RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.246141	924.477728	-0.003234	-1.4981E-06	0.3982	0.00018447	0.39497	0.00018297	463.24620423520776	19.817	0.37868	19.817	19.6	19.979	0	-0.078193	-0.00012556	NaN	35.618	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135410			21844	7935	15027	15061							0.012468459521414843
GVFEVHKVSP	10	Unmodified	_GVFEVHKVSP_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.7826538085938	2	549.800749	1097.58694	-0.87973	-0.00048367	-2.381	-0.0013091	-3.2607	-0.0017927	549.798955718924	27.164	0.28839	27.151	26.953	27.241	-0.012983					11	7	2	0	0	0	0.03519	1	1432	1432		34.173	8.5985	1	84758			21845	15514	15028	15062	25426	25426					0.04205431851596586
GVFFLTVHF	9	Unmodified	_GVFFLTVHF_					0	0	0		ENSG00000072401|ENST00000373910|UBE2D1	ENSG00000072401|ENST00000373910|UBE2D1	ENSG00000072401|ENST00000373910|UBE2D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7913818359375	2	533.789653	1065.56475	1.6266	0.00086825	2.6003	0.001388	4.2268	0.0022562	533.7908980514418	19.78	1.121	19.846	19.488	20.609	0.066195					55	22	4	0	0	0	0.67308	1	426	426		47.916	5.5195	1	470660			21846	1479	15029	15063	25427	25427					0.03459252173843197
GVFHRVAGSWK	11	Unmodified	_GVFHRVAGSWK_					0	0	0		ENST00000046794.9_1_5:169724659-169724776:-|nuORF	ENST00000046794.9_1_5:169724659-169724776:-|nuORF	ENST00000046794.9_1_5:169724659-169724776:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.335205078125	2	622.338364	1242.66217	-0.54269	-0.00033774	-2.3978	-0.0014922	-2.9405	-0.00183	622.3367429399468	110.01	0.87253	110.01	109.85	110.73	0.0059204					89	28	4	0	0	0	1.0624	1	13888	13888		21.686	1.6553	1	2532400			21847	11106	15030	15064	25428	25428					0.050550341027019385
GVFINPRIS	9	Unmodified	_GVFINPRIS_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.78521728515625	2	501.790184	1001.56581	-0.33296	-0.00016707	-4.2762	-0.0021458	-4.6092	-0.0023129	501.78802430151103	32.058	0.66306	32.12	31.839	32.502	0.062885					48	16	4	0	0	0	0.6504	1	2161	2161		49.442	3.4693	1	3243200	+		21848	28147	15031	15065	25429	25429					0.06509466542752307
GVFRGQVYF	9	Unmodified	_GVFRGQVYF_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7817993164062	2	536.782359	1071.55016	-0.44818	-0.00024058	0.68973	0.00037024	0.24155	0.00012966	536.782521387927	61.114	0.59724	60.908	60.62	61.217	-0.20599					27	14	2	0	0	0	0.59099	1	6818	6818		53.351	2.016	1	1388800			21849	8918	15032	15066	25430	25430					0.017251800257099603
GVFVPPEIP	9	Unmodified	_GVFVPPEIP_					0	0	0			REV__ENSG00000168032|ENST00000301825|ENTPD3	REV__ENSG00000168032|ENST00000301825|ENTPD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3004150390625	2	477.768386	953.522219	0.13465	6.4333E-05	-2.9568	-0.0014127	-2.8222	-0.0013484	477.7667699957245	33.085	0.48909	32.854	32.586	33.075	-0.23107					20	11	2	0	0	0	0.024466	1	2354	2354		33.516	12.569	1	166810	+		21850	26219	15033	15067	25431	25431					0.04359857045608351
GVFVPPEIP	9	Unmodified	_GVFVPPEIP_					0	0	0			REV__ENSG00000168032|ENST00000301825|ENTPD3	REV__ENSG00000168032|ENST00000301825|ENTPD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.3004150390625	2	477.768386	953.522219	-0.11047	-5.2779E-05	-2.8598	-0.0013663	-2.9703	-0.0014191	477.7667697209618	33.158	0.48325	32.958	32.649	33.133	-0.20019					20	11	2	0	0	0	0.024386	1	2351	2351		42.474	18.272	1	254440	+		21851	26219	15033	15067	25432	25432					0.04359857045608351
GVGAGVFIL	9	Unmodified	_GVGAGVFIL_					0	0	0		ENST00000527257.1_1_11:124972023-124972236:-|nuORF;ENSG00000150433|ENST00000682305|TMEM218	ENST00000527257.1_1_11:124972023-124972236:-|nuORF	ENST00000527257.1_1_11:124972023-124972236:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.1900634765625	2	416.749996	831.485439	0.69789	0.00029085	2.5256	0.0010525	3.2235	0.0013434	416.75108248719994	51.169	0.42343	51.057	50.786	51.209	-0.11163					14	10	2	0	0	0	0.024475	1	5209	5209		14.664	0	1	107670			21852	6135	15034	15068	25433	25433					0.06295605219713707
GVGERGGAQ	9	Unmodified	_GVGERGGAQ_					0	0	0		ENST00000552576.2_1_12:56122914-56123451:+|nuORF	ENST00000552576.2_1_12:56122914-56123451:+|nuORF	ENST00000552576.2_1_12:56122914-56123451:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.70947265625	2	415.709391	829.404229	-0.30723	-0.00012772	0.073528	3.0566E-05	-0.2337	-9.715E-05	415.70940807998153	26.102	2.1457	25.934	25.662	27.808	-0.16816					116	54	3	0	0	0	0.87448	1	1349	1349		34.173	1.3601	1	16521000			21853	16625	15035	15069	25434	25434					-0.017297024903314195
GVGGARTSLLF	11	Unmodified	_GVGGARTSLLF_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.7835083007812	2	539.306198	1076.59784	-1.8137	-0.00097812	0.85203	0.0004595	-0.96164	-0.00051862	539.3066211630371	29.643	0.40535	29.643	29.408	29.814	0					16	9	2	0	0	0	0.024811	1	1826	1826		37.812	0	1	117670	+		21854	23233	15036	15070	25435	25435					0.06260834225895451
GVGGPPCR	8	Carbamidomethyl (C)	_GVGGPPC(Carbamidomethyl (C))R_	GVGGPPC(1)R		GVGGPPC(49)R		0	1	0			REV__ENST00000593256.6_2_19:11456822-11456954:-|nuORF	REV__ENST00000593256.6_2_19:11456822-11456954:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	400.1966552734375	2	400.197605	798.380657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.267	1	80.029	79.529	80.529	-0.23784								0	0	0	0.58686	1	9607	9607		49.211	14.01	1		+		21855	35762	15037	15071	25436	25436	464				-0.02659839528496377
GVGGPPCR	8	Carbamidomethyl (C)	_GVGGPPC(Carbamidomethyl (C))R_	GVGGPPC(1)R		GVGGPPC(49)R		0	1	0			REV__ENST00000593256.6_2_19:11456822-11456954:-|nuORF	REV__ENST00000593256.6_2_19:11456822-11456954:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	400.19647216796875	2	400.197605	798.380657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.164	1	79.957	79.457	80.457	-0.20633								0	0	0	0.58686	1	9609	9609		49.211	12.182	1		+		21856	35762	15037	15071	25437	25437	464				-0.02659839528496377
GVGIVLCEVL	10	Unmodified	_GVGIVLCEVL_					0	0	0			REV__nc|ENSG00000113161|P04035-2|HMGCR	REV__nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2899169921875	2	501.288628	1000.5627	-0.55827	-0.00027985	4.2822	0.0021466	3.7239	0.0018667	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	1.1267	1	10416	10416		29.15	1.2673	1	2156900	+		21857	22045	15038	15072	25438	25438					0.06244455373712299
GVGKKRDV	8	Unmodified	_GVGKKRDV_					0	0	0		ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.226318359375	2	429.761426	857.5083	0.21231	9.1241E-05	0.37324	0.0001604	0.58555	0.00025165	429.76122258318213	45.628	0.59083	45.375	45.157	45.748	-0.25252					29	16	2	0	0	0	0.027866	1	4290	4290		12.207	5.0135	1	393980			21858	16482	15039	15073	25439	25439					0.07384624337180412
GVGKKRDV	8	Unmodified	_GVGKKRDV_					0	0	0		ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.22674560546875	2	429.761426	857.5083	-0.18681	-8.0285E-05	-0.13545	-5.821E-05	-0.32226	-0.0001385	429.76132890870184	45.529	0.49805	45.322	45.061	45.559	-0.20627					21	14	2	0	0	0	0.027866	1	4273	4273		42.474	10.52	1	516420			21859	16482	15039	15073	25440	25440					0.07384624337180412
GVGKKRDV	8	Unmodified	_GVGKKRDV_					0	0	0		ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	429.761426	857.5083	-0.40767	-0.0001752	-0.070739	-3.0401E-05	-0.47841	-0.0002056	429.7613929717025	45.343	0.39925	45.343	45.181	45.58	0	-0.022362	1.3979E-05	NaN	25.45	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186560			21860	16482	15039	15073							0.07384624337180412
GVGKKRDV	8	Unmodified	_GVGKKRDV_					0	0	0		ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	429.761426	857.5083	-0.43682	-0.00018773	-0.41878	-0.00017998	-0.8556	-0.0003677	429.7610242305606	45.488	0.40041	45.339	45.115	45.515	-0.1488	-0.026878	-0.00028517	NaN	25.45	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194720			21861	16482	15039	15073							0.07384624337180412
GVGKKRDV	8	Unmodified	_GVGKKRDV_					0	0	0		ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	429.761426	857.5083	0.12989	5.5821E-05	-2.1109	-0.00090719	-1.981	-0.00085137	429.76021141110897	45.359	0.71235	45.403	45.18	45.892	0.04388	0.036749	-0.0017396	NaN	25.45	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259740			21862	16482	15039	15073							0.07384624337180412
GVGKKRDV	8	Unmodified	_GVGKKRDV_					0	0	0		ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	ENST00000544657.1_1_12:7282564-7282825:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	429.761426	857.5083	0.12374	5.318E-05	1.3051	0.00056089	1.4289	0.00061407	429.7612602701783	45.512	0.65473	45.412	45.12	45.775	-0.099445	0.046434	0.0011966	NaN	25.45	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262380			21863	16482	15039	15073							0.07384624337180412
GVGKWGPRL	9	Unmodified	_GVGKWGPRL_					0	0	0		ENST00000585601.1_1_19:45377690-45381750:+|nuORF	ENST00000585601.1_1_19:45377690-45381750:+|nuORF	ENST00000585601.1_1_19:45377690-45381750:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2883605957031	2	485.285069	968.555585	3.2593	0.0015817	3.3646	0.0016328	6.624	0.0032145	485.28684316422704	17.869	2.0137	17.869	17.449	19.463	0					85	40	5	0	0	0	0.88411	1	221	221		33.516	0	1	6870700			21864	17230	15040	15074	25441	25441					0.07004903608185487
GVGLHWKG	8	Unmodified	_GVGLHWKG_					0	0	0			REV__nc|ENSG00000100299|P15289-2|ARSA	REV__nc|ENSG00000100299|P15289-2|ARSA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.216552734375	2	427.237587	852.460622	-0.094522	-4.0383E-05	4.2495	0.0018155	4.155	0.0017752	427.24004988353084	30.246	0.59507	30.001	29.568	30.163	-0.24415					21	13	2	0	0	0	0.027866	1	1874	1874		26.796	0	1	26878	+		21865	21085	15041	15075	25442	25442					0.02848970136983553
GVGLKIMRYI	10	Unmodified	_GVGLKIMRYI_					0	0	0			REV__ENST00000436135.1_1_1:158495283-158495625:+|nuORF	REV__ENST00000436135.1_1_1:158495283-158495625:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3457641601562	2	575.344269	1148.67399	-1.1631	-0.00066918	3.2818	0.0018882	2.1187	0.001219	575.3460130844637	97.061	1.8236	97.061	96.615	98.439	0					112	41	5	0	0	0	1.1237	1	12348	12348		23.042	2.0956	1	3789000	+		21866	32459	15042	15076	25443	25443					0.105595148016846
GVGLPGCPK	9	Unmodified	_GVGLPGCPK_					0	0	0		MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53876285-53877059:-|nuORF;ENST00000552365.1_1_12:53874968-53878035:-|nuORF	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	MAP3K12|p.S765Kfs*2|1|0.45|ENSG00000139625|chr12:53482128-53482129|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.8986511230469	2	414.225831	826.437109	0.29482	0.00012212	0.85693	0.00035496	1.1517	0.00047708	414.22612218619054	25.538	0.58057	25.618	25.254	25.835	0.08009					18	13	2	0	0	0	0.024418	1	1128	1128		13.775	0	1	66140			21867	5349	15043	15077	25444	25444					0.01694788308157058
GVGLRNCT	8	Unmodified	_GVGLRNCT_					0	0	0		ENST00000465224.5_1_2:97494197-97494470:+|nuORF	ENST00000465224.5_1_2:97494197-97494470:+|nuORF	ENST00000465224.5_1_2:97494197-97494470:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5704650878906	2	410.210712	818.406871	0.11247	4.6137E-05	-3.7819	-0.0015514	-3.6694	-0.0015052	410.20901096968964	31.949	0.63033	31.961	31.782	32.413	0.011797					20	15	2	0	0	0	0.027866	1	2198	2198		25.45	3.4903	1	112960			21868	14776	15044	15078	25445	25445					-0.009595703570312253
GVGPAGRTL	9	Unmodified	_GVGPAGRTL_					0	0	0		ENST00000494655.5_1_3:46966643-47018222:-|nuORF	ENST00000494655.5_1_3:46966643-47018222:-|nuORF	ENST00000494655.5_1_3:46966643-47018222:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2403869628906	2	414.240327	826.466101	-0.99539	-0.00041233	0.86922	0.00036007	-0.12617	-5.2265E-05	414.24060861540454	29.867	0.93482	29.945	29.489	30.424	0.078344					64	22	4	0	0	0	0.33245	1	1816	1816		71.296	7.9894	1	4467400			21869	15534	15045	15079	25446	25446					0.045926489288035555
GVGPARYL	8	Unmodified	_GVGPARYL_					0	0	0			REV__ENST00000284320.5_1_3:100119564-100119939:-|nuORF	REV__ENST00000284320.5_1_3:100119564-100119939:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.5580139160156	2	416.73742	831.460287	-0.021465	-8.9452E-06	0.81229	0.00033851	0.79082	0.00032956	416.7374640430541	24.66	0.53472	24.66	24.429	24.964	0					20	11	2	0	0	0	0.027866	1	1077	1077		29.842	0	1	71449	+		21870	29909	15046	15080	25447	25447					0.03781550417136259
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.2689208984375	2	413.268887	824.523222	-0.074845	-3.0931E-05	-0.095019	-3.9268E-05	-0.16986	-7.02E-05	413.2688655646756	28.455	1.0346	28.455	28.151	29.186	0					69	24	5	0	0	0	0.40853	2	1667	1655;1667		96.048	30.15	1	11996000			21871	1111	15047	15081	25448;25449	25449					0.10394116205179671
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.26910400390625	2	413.268887	824.523222	-0.041635	-1.7207E-05	-0.09002	-3.7203E-05	-0.13166	-5.4409E-05	413.26887745814287	28.4	1.3509	28.396	27.808	29.159	-0.0042019					82	32	4	0	0	0	0.40853	3	1639	1627;1639;1651		96.048	21.531	1	11141000			21872	1111	15047	15081	25450;25451;25452	25451					0.10394116205179671
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.26904296875	2	413.268887	824.523222	-0.038992	-1.6114E-05	-0.10212	-4.2201E-05	-0.14111	-5.8316E-05	413.2688300684122	28.189	1.2222	28.27	27.759	28.981	0.080812					72	29	4	0	0	0	0.52467	3	1560	1560;1570;1582		83.287	17.39	1	12564000			21873	1111	15047	15081	25453;25454;25455	25453					0.10394116205179671
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.26904296875	2	413.268887	824.523222	-1.0947	-0.00045239	0.87983	0.0003636	-0.21484	-8.8786E-05	413.26918793739094	28.47	1.0061	28.224	27.961	28.967	-0.24524					64	23	4	0	0	0	0.52467	2	1667	1655;1667		83.287	20.309	1	6104500			21874	1111	15047	15081	25456;25457	25457					0.10394116205179671
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.26904296875	2	413.268887	824.523222	-0.65926	-0.00027245	0.44759	0.00018497	-0.21167	-8.7478E-05	413.2690179537799	28.36	1.4822	28.191	27.847	29.329	-0.16897					73	34	4	0	0	0	0.52467	3	1642	1630;1642;1653		83.287	20.309	1	5715900			21875	1111	15047	15081	25458;25459;25460	25459					0.10394116205179671
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2689208984375	2	413.268887	824.523222	-0.32611	-0.00013477	0.094917	3.9226E-05	-0.23119	-9.5544E-05	413.26888367366564	28.457	1.3519	28.305	27.689	29.041	-0.15195					69	32	4	0	0	0	0.52467	1	1641	1641		83.287	20.309	1	7049300			21876	1111	15047	15081	25461	25461					0.10394116205179671
GVGRLGHIL	9	Unmodified	_GVGRLGHIL_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7691955566406	2	461.285069	920.555585	-0.5063	-0.00023355	-0.0086153	-3.9741E-06	-0.51492	-0.00023753	461.2847531493079	40.044	0.63836	39.932	39.64	40.278	-0.11223					42	16	4	0	0	0	0.024386	1	3469	3469		33.516	6.7195	1	1076800			21877	3931	15048	15082	25462	25462					0.09212903608181477
GVGSALNQTF	10	Unmodified	_GVGSALNQTF_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2355651855469	2	497.253631	992.49271	-0.5466	-0.0002718	-2.0506	-0.0010197	-2.5972	-0.0012915	497.25401451402286	30.828	0.33722	30.65	30.453	30.791	-0.17818					12	7	2	0	0	0	0.03519	1	2007	2007		27.882	7.4004	1	54944	+		21878	20681	15049	15083	25463	25463					-0.0038370697051277602
GVGSHTPQTHA	11	Unmodified	_GVGSHTPQTHA_					0	0	0			REV__ENST00000419510.6_1_3:187454417-187454675:-|nuORF	REV__ENST00000419510.6_1_3:187454417-187454675:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.265380859375	2	546.265062	1090.51557	-0.38931	-0.00021267	0.48703	0.00026605	0.097718	5.338E-05	546.265362993697	26.053	1.6161	25.885	25.7	27.317	-0.16816					110	41	4	0	0	0	1.0075	1	1288	1288		35.152	2.3396	1	25118000	+		21879	32142	15050	15084	25464	25464					-0.026066878530400572
GVGVVVACLI	10	Unmodified	_GVGVVVACLI_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2798767089844	2	465.278063	928.541574	0.10623	4.9428E-05	4.2696	0.0019865	4.3758	0.002036	465.2798872623321	87.824	1.1491	87.824	87.491	88.64	0					78	27	4	0	0	0	1.1309	1	11100	11100		26.796	2.2921	1	1815400	+		21880	23902	15051	15085	25465	25465					0.07444490064881393
GVGWKRVL	8	Unmodified	_GVGWKRVL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.750732421875	2	457.782162	913.549771	-0.95218	-0.00043589	-3.5933	-0.0016449	-4.5454	-0.0020808	457.780394759131	29.778	0.8059	29.778	29.37	30.176	0					41	19	3	0	0	0	0.027866	1	1863	1863		42.474	0	1	339670			21881	8357	15052	15086	25466	25466					0.08953805096518863
GVGWKRVL	8	Unmodified	_GVGWKRVL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.750244140625	2	457.782162	913.549771	-0.52093	-0.00023847	-3.8425	-0.001759	-4.3634	-0.0019975	457.7802505470909	29.575	0.51612	29.653	29.45	29.966	0.078344					30	12	3	0	0	0	0.027866	1	1766	1766		37.028	10.232	1	384070			21882	8357	15052	15086	25467	25467					0.08953805096518863
GVHCFGCKPR	10	Unmodified	_GVHCFGCKPR_					0	0	0			REV__nc|ENSG00000156531|Q8IWS0-4|PHF6	REV__nc|ENSG00000156531|Q8IWS0-4|PHF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.8294067382812	2	552.265496	1102.51644	-0.42204	-0.00023308	1.8275	0.0010092	1.4054	0.00077617	552.2660214841613	49.077	0.33129	48.797	48.718	49.049	-0.27977					10	8	2	0	0	0	0.03519	1	4913	4913		44.117	25.792	1	110620	+		21883	25083	15053	15087	25468	25468					-0.030718880093445478
GVHGTLTRVQ	10	Unmodified	_GVHGTLTRVQ_					0	0	0			REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2843017578125	2	534.301447	1066.58834	-1.2003	-0.00064133	0.45058	0.00024075	-0.74973	-0.00040058	534.3015346445567	37.575	0.91209	37.511	37.091	38.003	-0.063385					52	25	3	0	0	0	0.03519	1	3113	3113		25.574	1.0549	1	436370	+		21884	23225	15054	15088	25469	25469					0.05771065940371045
GVHTVHVTF	9	Unmodified	_GVHTVHVTF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7662353515625	2	498.766709	995.518865	-0.19915	-9.9327E-05	-0.21819	-0.00010883	-0.41734	-0.00020815	498.7665634047422	41.564	0.88682	41.429	41.099	41.986	-0.13553					103	23	6	0	0	0	0.074956	3	3661	3661;3671;3694		119.56	28.78	1	17249000			21885	9935	15055	15089	25470;25471;25472	25470					0.020926069916185952
GVHTVHVTF	9	Unmodified	_GVHTVHVTF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7665100097656	2	498.766709	995.518865	-0.39507	-0.00019705	-0.051138	-2.5506E-05	-0.44621	-0.00022255	498.7666005424219	41.786	1.2786	41.555	40.765	42.043	-0.23064					118	33	7	0	0	0	0.074956	4	3694	3682;3694;3705;3717		119.56	24.175	1	15908000			21886	9935	15055	15089	25473;25474;25475;25476	25474					0.020926069916185952
GVHTVHVTF	9	Unmodified	_GVHTVHVTF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7667236328125	2	498.766709	995.518865	-0.40858	-0.00020378	-0.060546	-3.0198E-05	-0.46912	-0.00023398	498.76658519221826	41.83	1.4415	41.6	40.624	42.065	-0.2303					120	38	7	0	0	0	0.028181	3	3705	3683;3694;3705		143.02	40.246	1	17804000			21887	9935	15055	15089	25477;25478;25479	25479					0.020926069916185952
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.2797241210938	2	522.279649	1042.54475	0.58094	0.00030341	-1.1863	-0.00061958	-0.60535	-0.00031616	522.2789696398011	59.748	1.249	59.748	59.333	60.582	0					101	31	5	0	0	0	0.47726	5	6830	6819;6830;6842;6855;6873		90.777	41.335	1	10490000			21888	1680	15056	15090	25480;25481;25482;25483;25484	25481					0.025174564432063562
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.2796630859375	2	522.279649	1042.54475	-0.37314	-0.00019488	-0.15726	-8.2132E-05	-0.5304	-0.00027702	522.2795217951365	59.951	1.1876	59.751	59.393	60.58	-0.20016					91	30	5	0	0	0	0.36026	2	6844	6832;6844		102.77	51.581	1	9775200			21889	1680	15056	15090	25485;25486	25486					0.025174564432063562
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2797241210938	2	522.279649	1042.54475	-0.39472	-0.00020615	-0.10972	-5.7306E-05	-0.50444	-0.00026346	522.2795584748227	59.645	1.2663	59.731	59.351	60.618	0.085682					93	33	5	0	0	0	0.36026	4	6746	6722;6734;6746;6760		102.77	47.997	1	9733500			21890	1680	15056	15090	25487;25488;25489;25490	25489					0.025174564432063562
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.2792358398438	2	522.279649	1042.54475	0.54784	0.00028613	-1.2826	-0.00066989	-0.73478	-0.00038376	522.2788638109996	60.013	1.1694	59.816	59.42	60.589	-0.19742					71	26	4	0	0	0	0.79525	1	6674	6674		60.972	30.654	1	5323500			21891	1680	15056	15090	25491	25491					0.025174564432063562
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.2796020507812	2	522.279649	1042.54475	0.31526	0.00016465	-0.86349	-0.00045099	-0.54823	-0.00028633	522.2790688570741	59.963	1.2347	59.787	59.401	60.635	-0.1761					73	28	4	0	0	0	0.79525	1	6667	6667		60.972	16.855	1	5029000			21892	1680	15056	15090	25492	25492					0.025174564432063562
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.2794799804688	2	522.279649	1042.54475	-0.13569	-7.0867E-05	-0.44815	-0.00023406	-0.58384	-0.00030493	522.2793167766746	60.086	1.0929	59.838	59.457	60.55	-0.24842					73	25	4	0	0	0	0.79525	1	6668	6668		60.972	30.654	1	4485700			21893	1680	15056	15090	25493	25493					0.025174564432063562
GVIKLGTK	8	Unmodified	_GVIKLGTK_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.1824645996094	2	408.271096	814.527639	-0.29211	-0.00011926	0.042427	1.7322E-05	-0.24968	-0.00010194	408.27096379499926	25.611	0.49776	25.384	25.105	25.602	-0.22683					19	11	2	0	0	0	0.027866	1	1208	1208		19.36	15.375	1	239470	+		21894	19930	15057	15091	25494	25494					0.11295580628086554
GVIKLGTK	8	Unmodified	_GVIKLGTK_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.182861328125	2	408.271096	814.527639	0.26523	0.00010829	-0.34916	-0.00014255	-0.083924	-3.4264E-05	408.27065299558745	25.314	0.41803	25.143	24.912	25.33	-0.17078					17	9	2	0	0	0	0.027866	1	1155	1155		26.796	13.837	1	184460	+		21895	19930	15057	15091	25495	25495					0.11295580628086554
GVIRAHKK	8	Unmodified	_GVIRAHKK_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7931823730469	2	454.793061	907.571569	3.9519	0.0017973	-4.0187	-0.0018277	-0.066704	-3.0337E-05	454.7910440177964	17.756	0.34269	17.756	17.598	17.94	0					15	6	3	0	0	0	0.88442	1	207	207		52.299	9.8247	1	115070			21896	6861	15058	15092	25496	25496					0.11408609845079809
GVIRAHKK	8	Unmodified	_GVIRAHKK_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	454.793061	907.571569	0.53213	0.00024201	-0.28979	-0.0001318	0.24233	0.00011021	454.79275125679055	17.918	0.49184	17.775	17.602	18.094	-0.14278	-0.061137	0.0025207	NaN	52.299	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107490			21897	6861	15058	15092							0.11408609845079809
GVIRAHKK	8	Unmodified	_GVIRAHKK_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	454.793061	907.571569	4.9229	0.0022389	-4.8617	-0.0022111	0.061219	2.7842E-05	454.7906843432446	17.917	0.58472	17.977	17.864	18.449	0.06036	0.14098	-0.0016379	NaN	52.299	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128410			21898	6861	15058	15092							0.11408609845079809
GVITFGPK	8	Unmodified	_GVITFGPK_					0	0	0			REV__nc|ENSG00000000971|P08603|CFH	REV__nc|ENSG00000000971|P08603|CFH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.8913879394531	2	409.742171	817.469789	-0.55365	-0.00022685	0.80013	0.00032785	0.24647	0.00010099	409.7424479152378	28.229	0.72989	27.984	27.718	28.448	-0.24524					34	17	3	0	0	0	0.027866	1	1675	1675		19.36	12.167	1	344670	+		21899	19754	15059	15093	25497	25497					0.0537531870265866
GVIVNNTE	8	Unmodified	_GVIVNNTE_					0	0	0		ENST00000589241.5_1_17:73851318-73851408:-|nuORF;ENST00000587374.5_3_17:73845777-73851378:-|nuORF;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000589241.5_1_17:73851318-73851408:-|nuORF	ENST00000589241.5_1_17:73851318-73851408:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.22247314453125	2	423.2218	844.429047	-0.1942	-8.2189E-05	2.0008	0.00084679	1.8066	0.0007646	423.2225094506578	29.183	1.3209	29.261	28.979	30.3	0.078344					62	32	3	0	0	0	0.99042	1	1723	1723		38.806	0	1	1782200			21900	4611	15060	15094	25498	25498					0.0006093259238468818
GVKEVLWVGVL	11	Unmodified	_GVKEVLWVGVL_					0	0	0			REV__SLC2A13|p.G452Vfs*6|1|0.18|ENSG00000151229|chr12:39830193-39830193|C/-|frameshift_variant	REV__SLC2A13|p.G452Vfs*6|1|0.18|ENSG00000151229|chr12:39830193-39830193|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.244658	1197.71214	0.24156	9.6683E-05	1.558	0.0006236	1.7996	0.00072028	400.2460100672643	22.038	0.85589	21.963	21.698	22.554	-0.075296					25	17	3	0	0	0	0.02479	1	739	739		37.508	4.4688	1	48054	+		21901	24761	15061	15095	25499	25499					0.12119723987984798
GVKGVHLK	8	Unmodified	_GVKGVHLK_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.2405090332031	2	419.268887	836.523222	-0.1427	-5.983E-05	0.38266	0.00016044	0.23996	0.00010061	419.2689244692263	23.886	0.34685	23.706	23.477	23.824	-0.17989					10	7	2	0	0	0	0.027866	1	975	975		33.516	16.151	1	39039	+		21902	22656	15062	15096	25500	25500					0.09842116205174989
GVKGVHLK	8	Unmodified	_GVKGVHLK_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	419.268887	836.523222	2.2953	0.00096233	-2.2067	-0.00092519	0.088578	3.7138E-05	419.26781313468786	24.348	0.87874	24.167	23.582	24.461	-0.18089					32	19	3	0	0	0	0.027866	1	951	951		25.45	15.98	1	302210	+		21903	22656	15062	15096	25501	25501					0.09842116205174989
GVKGVHLK	8	Unmodified	_GVKGVHLK_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	419.268887	836.523222	-0.093331	-3.9131E-05	0.29323	0.00012294	0.1999	8.381E-05	419.268818664723	24.241	0.50986	24.066	23.873	24.383	-0.17484	-0.050557	0.00099332	NaN	18.324	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363270	+		21904	22656	15062	15096							0.09842116205174989
GVKHILVT	8	Unmodified	_GVKHILVT_					0	0	0			REV__ENST00000529092.1_1_11:61106599-61106976:+|nuORF	REV__ENST00000529092.1_1_11:61106599-61106976:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.24273681640625	2	433.776545	865.538538	-0.59289	-0.00025718	0.83165	0.00036075	0.23876	0.00010357	433.7767612071216	51.159	0.58417	51.246	50.926	51.511	0.087006					20	15	2	0	0	0	0.027866	1	5360	5360		26.796	0	1	172690	+		21905	34509	15063	15097	25502	25502					0.10038983002368695
GVKHKGLI	8	Unmodified	_GVKHKGLI_					0	0	0		ENST00000394457.7_2_2:61406101-61411861:+|nuORF;nc|ENSG00000293434|Q719I0|AHSA2P	ENST00000394457.7_2_2:61406101-61411861:+|nuORF	ENST00000394457.7_2_2:61406101-61411861:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2463073730469	2	426.276712	850.538872	0.05612	2.3923E-05	1.2958	0.00055237	1.3519	0.0005763	426.2761715406933	86.749	0.1674	86.704	86.64	86.807	-0.045105					5	3	2	0	0	0	0.027866	1	10881	10881		4.3163	0	1	21462			21906	13489	15064	15098	25503	25503					0.10762402722230036
GVKIRAEELLD	11	Unmodified	_GVKIRAEELLD_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL;ENST00000463899.5_1_1:182781291-182795122:+|nuORF;nc|ENSG00000135838|Q9BXD5-2|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.9057312011719	3	414.906594	1241.69795	-0.045225	-1.8764E-05	-2.2645	-0.00093956	-2.3097	-0.00095832	414.9057411520974	21.247	1.3484	21.157	20.766	22.115	-0.090094					99	27	6	0	0	0	1.0123	1	644	644		34.087	0	1	3818100			21907	4941	15065	15099	25504	25504					0.08677026769032636
GVKKGFRG	8	Unmodified	_GVKKGFRG_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000557212.5_1_15:91479504-91485975:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.1930847167969	2	424.758687	847.502821	-0.51404	-0.00021834	1.0667	0.00045309	0.55266	0.00023475	424.75906635272395	34.277	0.63189	34.101	33.859	34.491	-0.17557					32	15	4	0	0	0	0.027866	1	2525	2525		19.36	5.5846	1	263370			21908	5425	15066	15100	25505	25505					0.07296945545363087
GVKKGFRG	8	Unmodified	_GVKKGFRG_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000557212.5_1_15:91479504-91485975:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	424.758687	847.502821	-0.7148	-0.00030362	0.5754	0.00024441	-0.1394	-5.921E-05	424.7588151350741	34.374	0.57854	34.374	34.011	34.59	0	0.19412	7.4015E-05	NaN	19.36	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325050			21909	5425	15066	15100							0.07296945545363087
GVKKGFRG	8	Unmodified	_GVKKGFRG_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000557212.5_1_15:91479504-91485975:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	424.758687	847.502821	-0.10175	-4.322E-05	0.22702	9.643E-05	0.12527	5.321E-05	424.75863708378466	34.175	0.54411	34.17	33.908	34.452	-0.0045624	-0.0098495	-0.00022194	NaN	19.36	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337020			21910	5425	15066	15100							0.07296945545363087
GVKKGFRG	8	Unmodified	_GVKKGFRG_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000557212.5_1_15:91479504-91485975:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	424.758687	847.502821	-0.51089	-0.000217	0.53321	0.00022648	0.022322	9.4814E-06	424.75872278088616	34.211	0.67328	34.261	33.884	34.557	0.050255	0.080827	3.8173E-05	NaN	19.36	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235780			21911	5425	15066	15100							0.07296945545363087
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.3106384277344	2	471.310752	940.606951	0.30942	0.00014583	-0.3903	-0.00018395	-0.080879	-3.8119E-05	471.31048489776583	19.95	1.006	19.95	19.366	20.372	0					54	20	4	0	0	0	0.26966	2	479	479;495		79.713	8.4169	1	911270			21912	16479	15067	15101	25506;25507	25506					0.13427227582224077
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.3107604980469	2	471.310752	940.606951	0.033733	1.5899E-05	-0.11678	-5.5041E-05	-0.083049	-3.9142E-05	471.3106027268326	20.209	1.2452	20.105	19.46	20.705	-0.10477					63	25	4	0	0	0	0.39228	2	506	488;506		66.429	10.866	1	908830			21913	16479	15067	15101	25508;25509	25509					0.13427227582224077
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.3106994628906	2	471.310752	940.606951	2.2024	0.001038	-2.1943	-0.0010342	0.0081384	3.8357E-06	471.3096122772709	20.074	1.0714	20.143	19.54	20.612	0.068876					57	21	4	0	0	0	0.19099	3	449	437;449;461		90.37	16.395	1	924460			21914	16479	15067	15101	25510;25511;25512	25511					0.13427227582224077
GVKKTRKA	8	Unmodified	_GVKKTRKA_					0	0	0			REV__ENST00000487233.1_1_2:217363570-217364184:+|nuORF	REV__ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.7408142089844	2	444.292894	886.571235	-0.29071	-0.00012916	2.462	0.0010939	2.1713	0.00096469	444.29270962519877	22.526	0.32746	22.526	22.338	22.665	0					9	6	2	0	0	0	0.027866	1	810	810		13.775	0	1	15615	+		21915	28344	15068	15102	25513	25513					0.12341190125209778
GVKKTVKYE	9	Unmodified	_GVKKTVKYE_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.3076782226562	2	526.310949	1050.60735	0.10297	5.4196E-05	-3.8029	-0.0020015	-3.6999	-0.0019473	526.3088337037691	17.913	0.34394	17.77	17.602	17.946	-0.14278					13	6	3	0	0	0	0.77768	1	215	215		40.778	3.6191	1	99645			21916	9547	15069	15103	25514	25514					0.08406602511422534
GVKKTVKYE	9	Unmodified	_GVKKTVKYE_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	526.310949	1050.60735	4.8799	0.0025684	-8.2889	-0.0043625	-3.4089	-0.0017942	526.306438750117	17.946	0.479	18.006	17.825	18.304	0.06036	0.15712	-0.0021831	NaN	40.778	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89038			21917	9547	15069	15103							0.08406602511422534
GVKLGYEI	8	Unmodified	_GVKLGYEI_					0	0	0		nc|ENSG00000173612|Q5T6X5-3|GPRC6A;ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A;GPRC6A|p.C103Vfs*12|1|0.29|ENSG00000173612|chr6:116809505-116809505|A/-|frameshift_variant	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.7517395019531	2	439.752736	877.490919	1.0675	0.00046945	-3.8051	-0.0016733	-2.7376	-0.0012039	439.75089146173684	20.702	1.033	20.771	20.316	21.349	0.068901					42	20	3	0	0	0	0.94517	1	527	527		45.952	0	1	431560			21918	8392	15070	15104	25515	25515					0.04727284011505617
GVKPCKCSVC	10	2 Carbamidomethyl (C)	_GVKPC(Carbamidomethyl (C))KC(Carbamidomethyl (C))SVC_	GVKPC(0.999)KC(0.995)SVC(0.006)		GVKPC(33)KC(23)SVC(-23)		0	2	0		ENSG00000181896|ENST00000592502|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2675170898438	2	569.264304	1136.51406	1.542	0.0008778	4.2015	0.0023918	5.7435	0.0032696	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.91678	2	815	815;960		52.937	11.51	3	2894000			21919	9079	15071	15105	25516;25517	25516	112;113				-0.04874104529312717
GVKPCKCSVC	10	2 Carbamidomethyl (C)	_GVKPC(Carbamidomethyl (C))KC(Carbamidomethyl (C))SVC_	GVKPC(1)KC(1)SVC		GVKPC(48)KC(38)SVC(-38)		0	2	0		ENSG00000181896|ENST00000592502|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2676391601562	2	569.264304	1136.51406	2.0313	0.0011564	3.9491	0.0022481	5.9805	0.0034045	569.2664275407891	24.24	1.2696	24.059	23.671	24.94	-0.18089					84	28	5	0	0	0	0.77808	1	1030	1030		62.107	9.1707	3	1943300			21920	9079	15071	15105	25518	25518	112;113				-0.04874104529312717
GVKPIPLS	8	Unmodified	_GVKPIPLS_					0	0	0			REV__ENST00000487163.5_1_1:161131815-161133927:+|nuORF	REV__ENST00000487163.5_1_1:161131815-161133927:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	405.7591247558594	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.17	1	114.02	113.52	114.52	-0.14448								0	0	0	1.1164	1	13718	13718		13.775	0.81615	1		+		21921	33602	15072	15106	25519	25519					0.08871891736748694
GVKPKKIVA	9	Unmodified	_GVKPKKIVA_					0	0	0		HIVEP1|p.R50P|1|0.16|ENSG00000095951|chr6:12119944-12119944|G/C|missense_variant	HIVEP1|p.R50P|1|0.16|ENSG00000095951|chr6:12119944-12119944|G/C|missense_variant	HIVEP1|p.R50P|1|0.16|ENSG00000095951|chr6:12119944-12119944|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.30908203125	2	470.32112	938.627687	1.5146	0.00071233	-1.4405	-0.0006775	0.074038	3.4821E-05	470.32025808897237	17.339	0.30138	17.185	17.007	17.308	-0.15403					8	5	2	0	0	0	0.024541	1	178	178		31.955	5.1588	1	44514			21922	17738	15073	15107	25520	25520					0.15591817961876586
GVKPPLDN	8	Unmodified	_GVKPPLDN_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.2510070800781	2	420.23471	838.454868	-0.60821	-0.00025559	1.7126	0.0007197	1.1044	0.00046411	420.23512154661375	26.003	0.63429	25.767	25.343	25.977	-0.23603					31	15	3	0	0	0	0.027866	1	1286	1286		11.511	0	1	171770	+		21923	24733	15074	15108	25521	25521					0.029178268346527148
GVKPPLDN	8	Unmodified	_GVKPPLDN_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	419.2507019042969	2	420.23471	838.454868	-0.54635	-0.00022959	1.7259	0.00072526	1.1795	0.00049567	420.23483533830296	25.833	0.68557	25.665	25.204	25.889	-0.16813					28	16	3	0	0	0	0.027866	1	1235	1235		29.15	3.6994	1	199460	+		21924	24733	15074	15108	25522	25522					0.029178268346527148
GVKPPLTSDP	10	Unmodified	_GVKPPLTSDP_					0	0	0			REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.777587890625	2	505.779482	1009.54441	-1.2244	-0.00061929	-2.2009	-0.0011132	-3.4254	-0.0017325	505.7783001345533	28.816	0.65577	28.816	28.53	29.186	0					38	15	3	0	0	0	0.64538	1	1707	1707		71.877	18.526	1	1091700	+		21925	31882	15075	15109	25523	25523					0.040020367233637444
GVKPPLTSDP	10	Unmodified	_GVKPPLTSDP_					0	0	0			REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	505.779482	1009.54441	-1.2244	-0.00061929	-2.2009	-0.0011132	-3.4254	-0.0017325	505.7783001345533	28.816	0.65577	28.816	28.53	29.186	0	0.090478	0.000468	NaN	71.877	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1091700	+		21926	31882	15075	15109							0.040020367233637444
GVKPPLTSDP	10	Unmodified	_GVKPPLTSDP_					0	0	0			REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.779482	1009.54441	-0.64203	-0.00032473	-2.8767	-0.001455	-3.5187	-0.0017797	505.7779318456472	28.771	0.73372	28.767	28.499	29.232	-0.0042019	0.041383	-0.00021559	NaN	71.877	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049100	+		21927	31882	15075	15109							0.040020367233637444
GVKPPLTSDP	10	Unmodified	_GVKPPLTSDP_					0	0	0			REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.779482	1009.54441	-0.01906	-9.6402E-06	-3.447	-0.0017434	-3.4661	-0.0017531	505.77767168779485	28.513	0.65226	28.593	28.329	28.981	0.080811	-0.13186	-0.00079246	NaN	71.877	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1243700	+		21928	31882	15075	15109							0.040020367233637444
GVKPQRNI	8	Unmodified	_GVKPQRNI_					0	0	0		nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	456.274701	910.534849	-0.1127	-5.1424E-05	1.1726	0.00053503	1.0599	0.00048361	456.2747037130204	24.757	0.97057	24.757	24.123	25.094	0					28	21	3	0	0	0	0.027866	1	1089	1089		19.36	0	1	141170			21929	8400	15076	15110	25524	25524					0.07600313228499544
GVKQEYRTWNP	11	Unmodified	_GVKQEYRTWNP_					0	0	0		ENSG00000188573|ENST00000338333|FBLL1	ENSG00000188573|ENST00000338333|FBLL1	ENSG00000188573|ENST00000338333|FBLL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.92144775390625	3	459.901843	1376.6837	-0.30625	-0.00014084	1.5207	0.00069937	1.2144	0.00055852	459.90166797065643	24.948	0.25873	24.721	24.538	24.797	-0.22683					6	5	2	0	0	0	0.024757	1	1135	1135		20.315	10.57	1	18715			21930	9729	15077	15111	25525	25525					0.010423743407500297
GVKRVQTLS	9	Unmodified	_GVKRVQTLS_					0	0	0			REV__ENST00000496740.6_1_7:2801875-2802795:-|nuORF	REV__ENST00000496740.6_1_7:2801875-2802795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.30078125	2	494.300916	986.587279	0.89614	0.00044296	-1.5866	-0.00078426	-0.69047	-0.0003413	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	0.85329	2	12308	12240;12308		35.618	6.4687	1	45891000	+		21931	33836	15078	15112	25526;25527	25527					0.09344851571484014
GVKRVQTLS	9	Unmodified	_GVKRVQTLS_					0	0	0			REV__ENST00000496740.6_1_7:2801875-2802795:-|nuORF	REV__ENST00000496740.6_1_7:2801875-2802795:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.30078125	2	494.300916	986.587279	0.83498	0.00041273	-1.1174	-0.00055231	-0.28239	-0.00013958	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	0.94809	2	11986	11986;12025		29.15	2.3535	1	37582000	+		21932	33836	15078	15112	25528;25529	25528					0.09344851571484014
GVKRVQTLS	9	Unmodified	_GVKRVQTLS_					0	0	0			REV__ENST00000496740.6_1_7:2801875-2802795:-|nuORF	REV__ENST00000496740.6_1_7:2801875-2802795:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.3007507324219	2	494.300916	986.587279	-0.25602	-0.00012655	-0.19108	-9.4451E-05	-0.44709	-0.000221	494.30075389334326	96.309	2.5046	96.153	95.62	98.125	-0.15646					207	58	7	0	0	0	0.96322	1	11946	11946		27.882	1.0861	1	35328000	+		21933	33836	15078	15112	25530	25530					0.09344851571484014
GVKSLKLER	9	Unmodified	_GVKSLKLER_					0	0	0			REV__nc|ENSG00000179295|Q06124-3|PTPN11	REV__nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3114624023438	2	515.324391	1028.63423	1.1023	0.00056802	-0.38789	-0.00019989	0.71437	0.00036813	515.3242095471732	20.196	0.13859	20	19.901	20.04	-0.19577					6	2	3	0	0	0	0.024418	1	507	507		30.318	8.3578	1	36680	+		21934	27254	15079	15113	25531	25531					0.1210571112260368
GVKSTLTT	8	Unmodified	_GVKSTLTT_					0	0	0		ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.8395080566406	2	403.734543	805.454533	-1.6458	-0.00066447	4.0756	0.0016455	2.4298	0.00098099	403.7362922666852	21.431	0.34388	21.219	20.971	21.315	-0.2128					10	6	2	0	0	0	0.027866	1	649	649		18.324	0	1	11237			21935	17572	15080	15114	25532	25532					0.04402407114810103
GVLAKNPQLR	10	Unmodified	_GVLAKNPQLR_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3348388671875	2	548.33529	1094.65603	-1.0935	-0.00059962	0.54682	0.00029984	-0.54671	-0.00029978	548.335472717585	29.51	0.83671	29.513	29.24	30.076	0.0031357					57	20	4	0	0	0	0.82838	1	1823	1823		58.782	5.8453	1	1376400			21936	7698	15081	15115	25533	25533					0.11248515871147902
GVLAVLPQTE	10	Unmodified	_GVLAVLPQTE_					0	0	0			REV__nc|ENSG00000157869|P51157-3|RAB28	REV__nc|ENSG00000157869|P51157-3|RAB28	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7920532226562	2	513.795132	1025.57571	-0.78385	-0.00040274	-2.4418	-0.0012546	-3.2256	-0.0016573	513.7938755172404	25.61	0.83949	25.575	25.313	26.152	-0.034397					68	19	5	0	0	0	0.94316	1	1214	1214		51.193	1.1682	1	1440700	+		21937	25155	15082	15116	25534	25534					0.06394609757489889
GVLFFFLS	8	Unmodified	_GVLFFFLS_					0	0	0			REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2613525390625	2	465.260197	928.50584	-0.55006	-0.00025592	3.9934	0.001858	3.4433	0.001602	465.2618029029249	22.536	0.92738	22.536	22.106	23.033	0					42	19	3	0	0	0	0.94001	1	795	795		46.766	7.9603	1	577860	+		21938	35672	15083	15117	25535	25535					0.03872775879517576
GVLGALLGVL	10	Unmodified	_GVLGALLGVL_					0	0	0		nc|ENSG00000132677|Q9H310-3|RHBG;ENST00000451864.6_1_1:156351301-156354326:+|nuORF;nc|ENSG00000132677|Q9H310-5|RHBG;nc|ENSG00000132677|Q9H310-4|RHBG;nc|ENSG00000132677|Q9H310-2|RHBG;ENSG00000132677|ENST00000537040|RHBG	nc|ENSG00000132677|Q9H310-3|RHBG	nc|ENSG00000132677|Q9H310-3|RHBG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2739562988281	2	456.299853	910.585153	-0.28291	-0.00012909	-1.4931	-0.0006813	-1.776	-0.00081039	456.29915798162705	27.821	0.34802	27.817	27.581	27.929	-0.0042					12	8	2	0	0	0	0.03519	1	1521	1521		26.796	14.589	1	43931			21939	18276	15084	15118	25536	25536					0.12628422833677178
GVLICHLL	8	Unmodified	_GVLICHLL_					0	0	0		ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	434.259674	866.504795	-0.54529	-0.0002368	-4.0479	-0.0017579	-4.5932	-0.0019946	434.2565548321562	38.374	0.83321	38.291	37.848	38.682	-0.082512					51	22	4	0	0	0	0.027866	1	3230	3230		16.705	0	1	220930			21940	9073	15085	15119	25537	25537					0.06620238238963339
GVLIGDRLYS	10	Unmodified	_GVLIGDRLYS_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.327392578125	2	546.806031	1091.59751	-0.73304	-0.00040083	3.223	0.0017624	2.49	0.0013615	546.8072658265386	42.323	0.3711	42.19	42.049	42.42	-0.13219					12	10	2	0	0	0	0.03519	1	3880	3880		66.429	15.094	1	168480			21941	10630	15086	15120	25538	25538					0.05537414506011373
GVLIGDRLYS	10	Unmodified	_GVLIGDRLYS_					0	0	0		nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	nc|ENSG00000221978|Q96S94-5|CCNL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.806031	1091.59751	-0.58562	-0.00032022	1.0445	0.00057114	0.45887	0.00025092	546.806792773945	42.173	0.46124	41.941	41.733	42.194	-0.23186	-0.12476	-0.00043698	NaN	66.429	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276960			21942	10630	15086	15120							0.05537414506011373
GVLILTLLGF	10	Unmodified	_GVLILTLLGF_					0	0	0		ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2871704101562	2	523.336436	1044.65832	-0.71474	-0.00037405	-1.882	-0.0009849	-2.5967	-0.001359	523.3353950435093	28.732	0.4174	28.728	28.458	28.875	-0.0042019					12	9	2	0	0	0	0.03519	1	1657	1657		30.504	7.4612	1	125350			21943	6586	15087	15121	25539	25539					0.13777551556290746
GVLIQGTQ	8	Unmodified	_GVLIQGTQ_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.182861328125	2	408.23471	814.454868	0.28459	0.00011618	0.7517	0.00030687	1.0363	0.00042305	408.2347507633532	24.959	0.48248	24.784	24.511	24.993	-0.17484					14	10	2	0	0	0	0.027866	1	1155	1155		35.201	3.2459	1	69790			21944	10947	15088	15122	25540	25540					0.04021826834662079
GVLKRLIL	8	Unmodified	_GVLKRLIL_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENSG00000163608|ENST00000314400|NEPRO;nc|ENSG00000163608|Q6NW34-2|NEPRO	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2694396972656	2	456.323663	910.632772	-0.16016	-7.3083E-05	4.0429	0.0018448	3.8827	0.0017718	456.3236300438933	27.797	0.19467	27.797	27.689	27.884	0					6	4	2	0	0	0	0.027866	1	1559	1559		20.482	5.8177	1	13146			21945	7113	15089	15123	25541	25541					0.17388121824524205
GVLLGAARR	9	Unmodified	_GVLLGAARR_					0	0	0			REV__ENST00000584123.5_1_17:45918479-45918515:-|nuORF	REV__ENST00000584123.5_1_17:45918479-45918515:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.79229736328125	2	456.790518	911.566484	4.5209	0.0020651	-4.354	-0.0019889	0.16695	7.626E-05	456.7883742378191	18.232	0.41364	18.295	18.186	18.599	0.063307					14	8	2	0	0	0	0.88411	1	236	236		33.516	0	1	33028	+		21946	35560	15090	15124	25542	25542					0.10716305982452923
GVLLLSALGL	10	Unmodified	_GVLLLSALGL_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.30010986328125	2	478.312961	954.611368	0.87976	0.0004208	-2.6883	-0.0012859	-1.8086	-0.00086506	478.31133167811265	72.468	0.69891	72.468	72.211	72.91	0					33	16	3	0	0	0	0.03519	1	8834	8834		94.006	5.3636	1	626350			21947	7150	15091	15125	25543	25543					0.13224692005132965
GVLLLSALGL	10	Unmodified	_GVLLLSALGL_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3002014160156	2	478.312961	954.611368	0.63777	0.00030505	-2.3625	-0.00113	-1.7247	-0.00082495	478.3116028677821	72.574	0.69618	72.584	72.29	72.987	0.0097733					39	16	3	0	0	0	0.03519	1	8793	8793		102.77	17.414	1	792040			21948	7150	15091	15125	25544	25544					0.13224692005132965
GVLLQCSAI	9	Unmodified	_GVLLQCSAI_					0	0	0		ENST00000478562.1_1_2:171709188-171709395:+|nuORF;ENST00000488724.5_1_2:171705783-171716389:+|nuORF;ENSG00000128683|ENST00000358196|GAD1	ENST00000478562.1_1_2:171709188-171709395:+|nuORF	ENST00000478562.1_1_2:171709188-171709395:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.24554443359375	2	452.252046	902.489538	0.59686	0.00026993	-4.1273	-0.0018666	-3.5305	-0.0015967	452.25003819923256	51.667	0.77692	51.549	51.162	51.939	-0.11876					31	20	2	0	0	0	0.024381	1	5306	5306		29.15	0	1	360370			21949	4308	15092	15126	25545	25545					0.03439326651096053
GVLLRRAE	8	Unmodified	_GVLLRRAE_					0	0	0		ENSG00000152208|ENST00000282020|GRID2;GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant;GRID2|p.N607Kfs*56|1|0.12|ENSG00000152208|chr4:93455934-93455935|-/A|frameshift_variant;nc|ENSG00000152208|O43424-2|GRID2	ENSG00000152208|ENST00000282020|GRID2	ENSG00000152208|ENST00000282020|GRID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2825012207031	2	457.282526	912.550499	-0.35785	-0.00016364	-0.065891	-3.0131E-05	-0.42374	-0.00019377	457.2824904903936	34.734	1.387	34.784	34.441	35.828	0.050251					74	35	5	0	0	0	1.043	1	2555	2555		30.504	2.6214	1	7974600			21950	6253	15093	15127	25546	25546					0.09072599745547905
GVLLVLLTPE	10	Unmodified	_GVLLVLLTPE_					0	0	0			REV__ENST00000531236.1_1_11:71192390-71192594:+|nuORF	REV__ENST00000531236.1_1_11:71192390-71192594:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.318115234375	2	527.33135	1052.64815	-0.71721	-0.00037821	-2.4035	-0.0012674	-3.1207	-0.0016457	527.3307731571136	39.468	0.53534	39.491	39.206	39.741	0.023727					21	14	2	0	0	0	0.03519	1	3338	3338		35.618	5.1146	1	98119	+		21951	34552	15094	15128	25547	25547					0.1239294383105971
GVLPKLSSC	9	Unmodified	_GVLPKLSSC_					0	0	0		ENST00000587084.5_1_19:32850301-32850421:+|nuORF	ENST00000587084.5_1_19:32850301-32850421:+|nuORF	ENST00000587084.5_1_19:32850301-32850421:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2540588378906	2	452.252046	902.489538	-0.25729	-0.00011636	3.5863	0.0016219	3.329	0.0015055	452.253775839778	20.697	1.6327	20.592	20.277	21.909	-0.10477					90	33	5	0	0	0	0.87448	1	604	604		34.173	0.65696	1	10662000			21952	17262	15095	15129	25548	25548					0.034393266511074216
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.7715148925781	2	455.77146	909.528367	-0.078497	-3.5777E-05	-0.00025467	-1.1607E-07	-0.078751	-3.5893E-05	455.7714244605273	73.216	0.91874	73.216	72.698	73.617	0					74	23	5	0	0	0	0.013018	7	8898	8898;8907;8919;8931;8942;8955;8970		200.96	110.77	1	11605000			21953	9323	15096	15130	25549;25550;25551;25552;25553;25554;25555	25549					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.7713317871094	2	455.77146	909.528367	-0.080691	-3.6777E-05	-0.091277	-4.1601E-05	-0.17197	-7.8378E-05	455.7713842522185	73.531	0.76861	73.26	72.842	73.611	-0.27126					64	19	4	0	0	0	0.013018	6	8918	8909;8918;8929;8942;8955;8967		173.85	102.55	1	12939000			21954	9323	15096	15130	25556;25557;25558;25559;25560;25561	25557					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.7712707519531	2	455.77146	909.528367	0.044088	2.0094E-05	-0.19924	-9.0806E-05	-0.15515	-7.0712E-05	455.77134165871155	73.228	1.0176	73.238	72.735	73.753	0.0096512					69	25	4	0	0	0	0.013018	6	8825	8825;8835;8847;8858;8870;8883		173.85	93.91	1	12500000			21955	9323	15096	15130	25562;25563;25564;25565;25566;25567	25562					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.7713623046875	2	455.77146	909.528367	-0.048861	-2.2269E-05	0.0034443	1.5698E-06	-0.045416	-2.0699E-05	455.7713552688175	73.51	0.88568	73.233	72.799	73.685	-0.2769					67	21	4	0	0	0	0.013018	5	8631	8609;8620;8631;8644;8656		173.85	93.91	1	6795500			21956	9323	15096	15130	25568;25569;25570;25571;25572	25570					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.7710876464844	2	455.77146	909.528367	-0.45242	-0.0002062	0.37296	0.00016999	-0.079454	-3.6213E-05	455.7715222909907	73.461	0.92003	73.196	72.767	73.687	-0.26479					71	22	4	0	0	0	0.013018	5	8630	8619;8630;8641;8653;8665		173.85	102.55	1	5929300			21957	9323	15096	15130	25573;25574;25575;25576;25577	25574					0.06998375277123614
GVLPNIQAV	9	Unmodified	_GVLPNIQAV_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.7720031738281	2	455.77146	909.528367	-0.28501	-0.0001299	0.26076	0.00011885	-0.024253	-1.1054E-05	455.7714906067661	73.308	0.92451	73.117	72.718	73.643	-0.19026					66	22	4	0	0	0	0.013018	5	8617	8592;8603;8617;8628;8641		173.85	93.91	1	4968900			21958	9323	15096	15130	25578;25579;25580;25581;25582	25580					0.06998375277123614
GVLRKEPVF	9	Unmodified	_GVLRKEPVF_					0	0	0		ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2509765625	2	522.813659	1043.61277	-0.24833	-0.00012983	-3.5747	-0.0018689	-3.8231	-0.0019988	522.8117263259484	35.027	0.55802	34.815	34.519	35.077	-0.21246					21	13	2	0	0	0	0.024436	1	2625	2625		23.042	0	1	137930			21959	827	15097	15131	25583	25583					0.09270326093883341
GVLRPFLSK	9	Unmodified	_GVLRPFLSK_					0	0	0			REV__ENST00000315249.11_1_17:33337811-33337910:-|nuORF	REV__ENST00000315249.11_1_17:33337811-33337910:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2415771484375	2	508.816202	1015.61785	-0.44682	-0.00022735	3.2035	0.00163	2.7567	0.0014027	508.8177006211307	36.843	0.59914	36.627	36.326	36.926	-0.21661					31	14	3	0	0	0	0.024495	1	2873	2873		26.693	4.733	1	632260	+		21960	30259	15098	15132	25584	25584					0.11066629956519591
GVLRQQLVV	9	Unmodified	_GVLRQQLVV_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.31927490234375	2	506.319109	1010.62366	-0.55107	-0.00027902	-0.1503	-7.6101E-05	-0.70137	-0.00035512	506.3190420082053	52.995	1.092	52.995	52.634	53.726	0					93	29	5	0	0	0	0.52323	1	5713	5713		57.811	5.5121	1	10675000			21961	731;10161	15099	15133	25585	25585					0.11877728468175519
GVLRRPLAQPT	11	Unmodified	_GVLRRPLAQPT_					0	0	0			REV__ENSG00000100092|ENST00000649765|SH3BP1	REV__ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3670043945312	2	604.367121	1206.71969	-0.63259	-0.00038232	0.014142	8.5468E-06	-0.61845	-0.00037377	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	1.0648	1	12860	12860		30.318	9.3708	1	4804600	+		21962	21047	15100	15134	25586	25586					0.12459876308275852
GVLRRVSVGR	10	Unmodified	_GVLRRVSVGR_					0	0	0		ENST00000301744.5_1_16:3493179-3493473:-|nuORF	ENST00000301744.5_1_16:3493179-3493473:-|nuORF	ENST00000301744.5_1_16:3493179-3493473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.845703125	2	549.846356	1097.67816	0.076375	4.1994E-05	-0.41899	-0.00023038	-0.34262	-0.00018839	549.8459791732284	19.634	0.49213	19.474	19.233	19.725	-0.16079					25	9	4	0	0	0	1.1286	1	446	446		25.574	0.12388	1	221780			21963	11935	15101	15135	25587	25587					0.13322740339617667
GVLSHGICRA	10	Unmodified	_GVLSHGICRA_					0	0	0			REV__ENSG00000169908|ENST00000305366|TM4SF1	REV__ENSG00000169908|ENST00000305366|TM4SF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7710266113281	2	506.771468	1011.52838	-0.48121	-0.00024386	1.4339	0.00072667	0.95271	0.00048281	506.77183885698105	21.581	2.4252	21.491	21.059	23.485	-0.090092					114	52	5	0	0	0	1.0393	1	677	677		40.778	5.1599	1	385870	+		21964	26415	15102	15136	25588	25588					0.023080520054804765
GVLSIRKP	8	Unmodified	_GVLSIRKP_					0	0	0			REV__ENST00000369331.8_1_10:115439067-115480867:+|nuORF	REV__ENST00000369331.8_1_10:115439067-115480867:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.21905517578125	2	435.281995	868.549437	-0.29688	-0.00012923	-0.32059	-0.00013954	-0.61746	-0.00026877	435.2817854069223	30.544	0.41359	30.552	30.414	30.828	0.0086708					12	9	2	0	0	0	0.027866	1	1936	1936		7.6903	0	1	56173	+		21965	31084	15103	15137	25589	25589					0.10990385376658196
GVLTIWLSGA	10	Unmodified	_GVLTIWLSGA_					0	0	0			REV__ENST00000489469.5_1_21:35757936-35772344:+|nuORF	REV__ENST00000489469.5_1_21:35757936-35772344:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2415771484375	2	508.792392	1015.57023	-0.49632	-0.00025252	-3.7125	-0.0018889	-4.2088	-0.0021414	508.7903138502827	36.887	0.44304	36.667	36.324	36.767	-0.2195					14	10	2	0	0	0	0.03519	1	2873	2873		34.173	0	1	143670	+		21966	33669	15104	15138	25590	25590					0.06306930965661195
GVLVLIEAL	9	Unmodified	_GVLVLIEAL_					0	0	0			REV__nc|ENSG00000162413|Q9UJP4-2|KLHL21	REV__nc|ENSG00000162413|Q9UJP4-2|KLHL21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.79852294921875	2	463.799686	925.584819	-0.23124	-0.00010725	-2.4163	-0.0011207	-2.6475	-0.0012279	463.7984155089555	41.773	0.96626	41.641	41.352	42.319	-0.13219					65	27	4	0	0	0	0.85941	1	3766	3766		35.201	1.0282	1	2466000	+		21967	36844	15105	15139	25591	25591					0.11905003113804469
GVLVLTRAKRT	11	Unmodified	_GVLVLTRAKRT_					0	0	0		ENST00000465343.2_1_7:63768387-63768672:+|nuORF	ENST00000465343.2_1_7:63768387-63768672:+|nuORF	ENST00000465343.2_1_7:63768387-63768672:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	405.26470947265625	3	405.262823	1212.76664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.97	1	113.83	113.33	114.33	-0.14448								0	0	0	1.6884	1	13708	13708		6.6596	2.3208	1				21968	14779	15106	15140	25592	25592					0.16876735859386827
GVLVMPLAIV	10	Unmodified	_GVLVMPLAIV_					0	0	0		ENSG00000121933|ENST00000369716|TMIGD3;ENSG00000282608|ENST00000241356|ADORA3	ENSG00000121933|ENST00000369716|TMIGD3	ENSG00000121933|ENST00000369716|TMIGD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.79827880859375	2	506.317189	1010.61982	-0.45052	-0.00022811	3.7723	0.00191	3.3218	0.0016819	506.31911514349605	20.613	0.39692	20.39	20.167	20.564	-0.22344					12	7	2	0	0	0	0.03519	1	532	532		26.796	0	1	48845			21969	3898	15107	15141	25593	25593					0.1149392265010647
GVLVSLYE	8	Unmodified	_GVLVSLYE_					0	0	0		ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	MSMS	OPSCC_40_ClassI_Rep-1	4	440.24371337890625	2	440.244744	878.474934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.07	1	24.843	24.343	25.343	-0.22683								0	0	0	0.78881	1	1158	1158		35.201	0	1				21970	10007	15108	15142	25594	25594					0.030835777746119675
GVLWSWLI	8	Unmodified	_GVLWSWLI_					0	0	0		nc|ENSG00000284862|Q9UFE4-2|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	nc|ENSG00000284862|Q9UFE4-2|CCDC39	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.27984619140625	2	487.278921	972.543289	-0.49955	-0.00024342	4.3785	0.0021335	3.8789	0.0018901	487.2803949566689	23.393	1.0602	23.393	22.848	23.908	0					55	24	4	0	0	0	0.85409	1	920	920		54.765	10.648	1	894280			21971	18811	15109	15143	25595	25595					0.0559186714514226
GVMESVIAL	9	Unmodified	_GVMESVIAL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.7516784667969	2	459.751879	917.489204	-0.18573	-8.5388E-05	0.55242	0.00025398	0.3667	0.00016859	459.7519276224784	81.678	3.2078	81.678	80.746	83.954	0					113	76	2	0	0	0	0.074956	1	10188	10188		119.56	27.366	1	1164700			21972	5425;16658	15110	15144	25596	25596					0.027159069312460815
GVMESVIAL	9	Unmodified	_GVMESVIAL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.751708984375	2	459.751879	917.489204	0.18126	8.3333E-05	0.10505	4.8297E-05	0.28631	0.00013163	459.75177698551573	81.841	1.7803	81.711	81.094	82.875	-0.13075					70	42	2	0	0	0	0.0146	1	10171	10171		163.84	57.429	1	1074400			21973	5425;16658	15110	15144	25597	25597					0.027159069312460815
GVMESVIAL	9	Unmodified	_GVMESVIAL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.7515869140625	2	459.751879	917.489204	-0.11248	-5.1715E-05	0.50991	0.00023443	0.39743	0.00018272	459.7518874076546	81.667	4.8509	81.693	79.523	84.374	0.025711					148	115	2	0	0	0	0.015769	2	10105	10105;10117		157.99	50.733	1	1217800			21974	5425;16658	15110	15144	25598;25599	25598					0.027159069312460815
GVMGFFLHW	9	Unmodified	_GVMGFFLHW_					0	0	0		ENST00000526627.1_1_5:150175791-150175890:+|nuORF	ENST00000526627.1_1_5:150175791-150175890:+|nuORF	ENST00000526627.1_1_5:150175791-150175890:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.819091796875	2	547.26803	1092.52151	-0.90072	-0.00049294	-0.53504	-0.00029281	-1.4358	-0.00078575	547.2674884004409	43.953	1.0062	43.99	43.235	44.241	0.0369					39	27	3	0	0	0	0.024475	1	4122	4122		29.842	0	1	721030			21975	16127	15111	15145	25600	25600					-0.02105260875100612
GVMHGKKKHVL	11	Unmodified	_GVMHGKKKHVL_					0	0	0			REV__chr17:75737444-75739880|456|32.66|0.75|5.45|+|2|ITGB4,ITGB4|1	REV__chr17:75737444-75739880|456|32.66|0.75|5.45|+|2|ITGB4,ITGB4|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.8876037597656	3	411.913137	1232.71758	-0.58758	-0.00024203	3.0428	0.0012534	2.4552	0.0010113	412.2485960171416	27.521	0.55658	27.353	27.013	27.57	-0.16816					20	12	2	0	0	0	0.024731	1	1537	1537		18.531	0	1	140880	+		21976	19390	15112	15146	25601	25601					0.11053124298791772
GVMQIPKNL	9	Unmodified	_GVMQIPKNL_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.2882080078125	2	500.28642	998.558287	-0.91018	-0.00045535	2.5457	0.0012736	1.6355	0.00081823	500.28843612336397	23.917	1.2062	23.87	23.281	24.487	-0.047148					66	27	5	0	0	0	0.40179	1	991	991		65.803	7.9919	1	2416300			21977	8041	15113	15147	25602	25602					0.05894990950821466
GVMQIPKNL	9	Unmodified	_GVMQIPKNL_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	500.28642	998.558287	-0.024409	-1.2211E-05	1.9225	0.00096178	1.8981	0.00094957	500.2880362581526	23.812	1.0567	23.888	23.351	24.408	0.076241	-0.00018503	-0.00040295	NaN	65.803	66	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2767700			21978	8041	15113	15147							0.05894990950821466
GVMTVIYIL	9	Unmodified	_GVMTVIYIL_					0	0	0			REV__nc|ENSG00000225997|P0C604|OR4A8	REV__nc|ENSG00000225997|P0C604|OR4A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3110656738281	2	504.793546	1007.57254	-0.85325	-0.00043072	1.4554	0.00073469	0.60218	0.00030398	504.79401634217027	35.5	0.33436	35.5	35.235	35.57	0					12	8	2	0	0	0	0.024412	1	2714	2714		50.025	9.4519	1	92960	+		21979	37139	15114	15148	25603	25603					0.06905643379104731
GVNIKVRR	8	Unmodified	_GVNIKVRR_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MSMS	OPSCC_40_ClassI_Rep-2	5	471.30364990234375	2	471.303793	940.593033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.925	1	17.718	17.218	18.218	-0.20669								0	0	0	0.90755	1	233	233		26.796	2.5934	1		+		21980	27502	15115	15149	25604	25604					0.12035994873792788
GVNILLSFRPD	11	Unmodified	_GVNILLSFRPD_					0	0	0			REV__ENST00000552029.1_1_12:107380386-107380746:-|nuORF	REV__ENST00000552029.1_1_12:107380386-107380746:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	410.8988037109375	3	410.89955	1229.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.413	1	18.209	17.709	18.709	-0.20371								0	0	0	1.3148	1	292	292		25.126	0.6068	1		+		21981	34943	15116	15150	25605	25605					0.07117061460189689
GVNKDSYLI	9	Unmodified	_GVNKDSYLI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7714538574219	2	504.771657	1007.52876	-0.24184	-0.00012207	-0.27251	-0.00013756	-0.51435	-0.00025963	504.77140654378724	48.855	0.81403	48.855	48.585	49.399	0					70	22	4	0	0	0	0.1158	3	5026	5003;5015;5026		107.01	35.712	1	7898500			21982	7485	15117	15151	25606;25607;25608	25608					0.025297502063153843
GVNKDSYLI	9	Unmodified	_GVNKDSYLI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7719421386719	2	504.771657	1007.52876	-0.45459	-0.00022946	0.011361	5.7346E-06	-0.44323	-0.00022373	504.7715700748132	49.07	0.82968	48.917	48.575	49.405	-0.15277					67	22	4	0	0	0	0.2101	4	5003	5003;5013;5024;5036		87.696	24.189	1	8276800			21983	7485	15117	15151	25609;25610;25611;25612	25609					0.025297502063153843
GVNKDSYLI	9	Unmodified	_GVNKDSYLI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7718505859375	2	504.771657	1007.52876	-0.71718	-0.00036201	0.32392	0.0001635	-0.39326	-0.00019851	504.77170762544716	48.755	0.82572	48.822	48.519	49.345	0.066795					64	22	4	0	0	0	0.15366	3	4924	4924;4936;4948		98.629	14.011	1	7933600			21984	7485	15117	15151	25613;25614;25615	25613					0.025297502063153843
GVNKDSYLI	9	Unmodified	_GVNKDSYLI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.771657	1007.52876	-0.21924	-0.00011066	1.069	0.00053958	0.84972	0.00042892	504.77119164608604	49.326	0.22801	49.144	49	49.228	-0.18206	0.20991	0.0010685	NaN	107.01	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49533			21985	7485	15117	15151							0.025297502063153843
GVNPAVISQ	9	Unmodified	_GVNPAVISQ_					0	0	0		ENST00000548741.5_1_12:70687896-70687962:+|nuORF	ENST00000548741.5_1_12:70687896-70687962:+|nuORF	ENST00000548741.5_1_12:70687896-70687962:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2588806152344	2	442.745442	883.476331	-0.31344	-0.00013877	1.3089	0.0005795	0.99543	0.00044072	442.7453221410456	23.24	0.36254	23.316	23.156	23.518	0.076239					16	8	2	0	0	0	0.024319	1	877	877		31.53	14.165	1	49657			21986	16556	15118	15152	25616	25616					0.02993211863383749
GVNRGMVS	8	Unmodified	_GVNRGMVS_					0	0	0		nc|ENSG00000197119|Q8N8R3-3|SLC25A29;ENSG00000197119|ENST00000359232|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5702819824219	2	410.210712	818.406871	0.49629	0.00020358	-4.2345	-0.001737	-3.7382	-0.0015335	410.2088040120611	31.775	0.56414	31.844	31.567	32.131	0.068962					21	13	2	0	0	0	0.027866	1	2134	2134		31.955	14.59	1	89524			21987	9956	15119	15153	25617	25617					-0.009595703570312253
GVPADQLRVIF	11	Unmodified	_GVPADQLRVIF_					0	0	0		PARK2|p.A92Rfs*11|1|0.2|ENSG00000185345|chr6:162262663-162262663|C/-|frameshift_variant;nc|ENSG00000185345|O60260-6|PRKN;nc|ENSG00000185345|O60260-7|PRKN;nc|ENSG00000185345|O60260-5|PRKN;nc|ENSG00000185345|O60260-8|PRKN;nc|ENSG00000185345|O60260-2|PRKN;ENSG00000185345|ENST00000366898|PRKN	PARK2|p.A92Rfs*11|1|0.2|ENSG00000185345|chr6:162262663-162262663|C/-|frameshift_variant	PARK2|p.A92Rfs*11|1|0.2|ENSG00000185345|chr6:162262663-162262663|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.5679626464844	3	405.567912	1213.68191	1.6524	0.00067016	-1.2881	-0.00052241	0.3643	0.00014775	405.56732697373536	42.229	1.1873	42.255	41.961	43.148	0.026012					94	33	5	0	0	0	1.0022	1	3829	3829		36.318	0	1	4909900			21988	9430	15120	15154	25618	25618					0.0836136532279852
GVPAPPLLDP	10	Unmodified	_GVPAPPLLDP_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.25775146484375	2	488.279118	974.543683	-0.97617	-0.00047664	-2.7903	-0.0013624	-3.7665	-0.0018391	488.27750577333615	23.075	0.70266	23.151	22.609	23.312	0.076239					31	15	3	0	0	0	0.03519	1	800	800		21.96	10.449	1	69137			21989	2291	15121	15155	25619	25619					0.055392420743373805
GVPAPPLLDP	10	Unmodified	_GVPAPPLLDP_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.279118	974.543683	-0.43108	-0.00021049	-3.6021	-0.0017588	-4.0331	-0.0019693	488.2773017179108	23.18	0.78755	23.18	22.572	23.36	0	0.03669	-0.00023046	NaN	51.335	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80757			21990	2291	15121	15155							0.055392420743373805
GVPAPPLLDP	10	Unmodified	_GVPAPPLLDP_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	488.279118	974.543683	-0.47652	-0.00023267	-3.6589	-0.0017866	-4.1355	-0.0020193	488.27730272769224	23.16	0.65124	23.099	22.616	23.267	-0.06086	-0.044542	-0.000286	NaN	51.335	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100960			21991	2291	15121	15155							0.055392420743373805
GVPARRRR	8	Unmodified	_GVPARRRR_					0	0	0		ENST00000223145.9_1_7:8008821-8009403:+|nuORF	ENST00000223145.9_1_7:8008821-8009403:+|nuORF	ENST00000223145.9_1_7:8008821-8009403:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.77960205078125	2	484.304659	966.594764	-0.59705	-0.00028915	1.737	0.00084123	1.1399	0.00055208	484.3051036752021	29.081	0.43087	29.159	28.979	29.41	0.078344					15	10	2	0	0	0	0.027866	1	1687	1687		33.516	9.3128	1	105180			21992	11197	15122	15156	25620	25620					0.11013048682411863
GVPFLAQFGR	10	Unmodified	_GVPFLAQFGR_					0	0	0			REV__nc|ENSG00000204577|O75022|LILRB3	REV__nc|ENSG00000204577|O75022|LILRB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8036499023438	2	546.303458	1090.59236	-0.36973	-0.00020198	3.3954	0.0018549	3.0257	0.001653	546.305274815463	45.286	0.68216	45.033	44.508	45.19	-0.25252					35	17	3	0	0	0	0.03519	1	4245	4245		37.159	0	1	1892400	+		21993	37080	15123	15157	25621	25621					0.050691554340801304
GVPGLIGDL	9	Unmodified	_GVPGLIGDL_					0	0	0		ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7437744140625	2	420.744911	839.475269	-0.4771	-0.00020074	-2.6344	-0.0011084	-3.1115	-0.0013091	420.7438210366682	27.588	1.4098	27.588	27.286	28.696	0					86	35	4	0	0	0	0.96855	1	1555	1555		26.796	1.3459	1	9148300			21994	9918	15124	15158	25622	25622					0.04910997494471303
GVPGPFGPPGP	11	Unmodified	_GVPGPFGPPGP_					0	0	0			REV__nc|ENSG00000169031|Q01955-3|COL4A3	REV__nc|ENSG00000169031|Q01955-3|COL4A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7561950683594	2	489.75581	977.497067	0.22501	0.0001102	0.64792	0.00031732	0.87293	0.00042752	489.75599275724414	19.62	1.7805	19.62	19.366	21.146	0					66	36	4	0	0	0	1.0219	1	446	446		31.955	1.4512	1	574700	+		21995	36911	15125	15159	25623	25623					0.007418022430556448
GVPGRAPPAHH	11	Unmodified	_GVPGRAPPAHH_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.2953491210938	2	548.293956	1094.57336	-0.80449	-0.0004411	3.1314	0.0017169	2.3269	0.0012758	548.2957619915276	19.826	2.2552	19.707	19.446	21.701	-0.11872					130	46	5	0	0	0	1.018	1	494	494		32.812	2.4947	1	5925800			21996	15462	15126	15160	25624	25624					0.02985618863021955
GVPIDITV	8	Unmodified	_GVPIDITV_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.87890625	2	407.239461	812.46437	0.15433	6.2849E-05	-3.3044	-0.0013457	-3.1501	-0.0012828	407.23805524144586	20.256	0.39428	20.151	19.932	20.326	-0.10477					16	7	3	0	0	0	0.027866	1	491	491		15.636	6.1657	1	120470			21997	3719	15127	15161	25625	25625					0.050635951201911666
GVPIEPII	8	Unmodified	_GVPIEPII_					0	0	0		ENSG00000182271|ENST00000328886|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.245849609375	2	419.257654	836.500755	-0.30029	-0.0001259	-2.197	-0.00092111	-2.4973	-0.001047	419.2566268417399	23.243	0.85069	23.319	22.84	23.69	0.076239					46	19	3	0	0	0	0.027866	1	866	866		39.021	10.767	1	452340			21998	9121	15128	15162	25626	25626					0.0759647201689404
GVPIEPII	8	Unmodified	_GVPIEPII_					0	0	0		ENSG00000182271|ENST00000328886|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	419.257654	836.500755	-0.1755	-7.358E-05	-2.1767	-0.00091258	-2.3522	-0.00098616	419.25655313601146	23.37	0.7884	23.37	23.033	23.822	0	0.032248	-9.0161E-05	NaN	39.021	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427670			21999	9121	15128	15162							0.0759647201689404
GVPIEPII	8	Unmodified	_GVPIEPII_					0	0	0		ENSG00000182271|ENST00000328886|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	419.257654	836.500755	-0.41489	-0.00017395	-1.7012	-0.00071323	-2.1161	-0.00088718	419.2566854098365	23.385	0.8378	23.324	22.889	23.727	-0.060862	-0.0139	0.00030854	NaN	39.021	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432810			22000	9121	15128	15162							0.0759647201689404
GVPIISVTG	9	Unmodified	_GVPIISVTG_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.7516174316406	2	421.752736	841.490919	-0.73371	-0.00030945	-1.648	-0.00069507	-2.3818	-0.0010045	421.75196755751443	89.911	1.2885	89.748	89.052	90.34	-0.1626					62	30	4	0	0	0	0.99229	1	10990	10990		21.96	1.4781	1	782050	+		22001	22391	15129	15163	25627	25627					0.06383284011519663
GVPIISVTG	9	Unmodified	_GVPIISVTG_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	421.752736	841.490919	0.35756	0.0001508	-2.9409	-0.0012403	-2.5833	-0.0010895	421.75143280090685	89.733	1.197	89.747	89.255	90.452	0.013443	0.009199	-0.00051071	NaN	21.96	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	783630	+		22002	22391	15129	15163							0.06383284011519663
GVPIISVTG	9	Unmodified	_GVPIISVTG_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	421.752736	841.490919	-0.73371	-0.00030945	-1.648	-0.00069507	-2.3818	-0.0010045	421.75196755751443	89.911	1.2885	89.748	89.052	90.34	-0.1626	0.01024	0.0005798	NaN	21.96	62	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782050	+		22003	22391	15129	15163							0.06383284011519663
GVPIISVTG	9	Unmodified	_GVPIISVTG_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	421.752736	841.490919	-0.35227	-0.00014857	-2.1384	-0.00090188	-2.4907	-0.0010505	421.7517391211087	89.882	1.0004	89.754	89.413	90.414	-0.12774	0.016059	0.00016617	NaN	21.96	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519090	+		22004	22391	15129	15163							0.06383284011519663
GVPKIADPEV	10	Unmodified	_GVPKIADPEV_					0	0	0			REV__nc|ENSG00000170558|P19022-2|CDH2	REV__nc|ENSG00000170558|P19022-2|CDH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7905883789062	2	512.787307	1023.56006	0.44547	0.00022843	3.5754	0.0018334	4.0209	0.0020619	512.7890947917437	20.666	0.54075	20.734	20.514	21.054	0.068901					18	10	2	0	0	0	1.0271	1	530	530		42.396	7.1954	1	135350	+		22005	26485	15130	15164	25628	25628					0.049223232404074224
GVPLGYPIKA	10	Unmodified	_GVPLGYPIKA_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7656555175781	2	507.80276	1013.59097	-0.41489	-0.00021068	-2.6205	-0.0013307	-3.0353	-0.0015414	507.8010104618124	31.774	0.84469	31.785	31.299	32.144	0.011797					34	20	2	0	0	0	0.03519	1	2117	2117		45.952	3.4775	1	261340			22006	1128	15131	15165	25629	25629					0.08471521345325073
GVPLRIID	8	Unmodified	_GVPLRIID_					0	0	0		ENSG00000004799|ENST00000005178|PDK4;ENST00000473796.1_1_7:95214955-95221973:-|nuORF	ENSG00000004799|ENST00000005178|PDK4	ENSG00000004799|ENST00000005178|PDK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7144470214844	2	441.774003	881.533452	-0.074041	-3.271E-05	3.5826	0.0015827	3.5086	0.00155	441.775983960515	31.282	0.83265	31.293	30.831	31.663	0.011797					25	19	2	0	0	0	0.027866	1	2048	2048		33.516	9.3128	1	212260			22007	746	15132	15166	25630	25630					0.08794679139748496
GVPLSVRGW	9	Unmodified	_GVPLSVRGW_					0	0	0			REV__ENST00000315368.7_1_4:25378851-25382068:+|nuORF	REV__ENST00000315368.7_1_4:25378851-25382068:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7748718261719	2	485.777077	969.5396	-0.85881	-0.00041719	-3.6016	-0.0017496	-4.4605	-0.0021668	485.7751613421491	23.218	0.84753	23.294	22.886	23.734	0.076241					49	19	3	0	0	0	0.77768	1	852	852		40.778	0.20554	1	810750	+		22008	30266	15133	15167	25631	25631					0.053611973712804684
GVPNLKLL	8	Unmodified	_GVPNLKLL_					0	0	0			REV__ENST00000509696.5_1_4:7062591-7066009:-|nuORF	REV__ENST00000509696.5_1_4:7062591-7066009:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2539367675781	2	427.278921	852.543289	-0.58311	-0.00024915	-2.2789	-0.00097373	-2.862	-0.0012229	427.27693015288395	23.316	0.40107	23.255	23.069	23.47	-0.06086					15	9	3	0	0	0	0.027866	1	919	919		44.531	0	1	94415	+		22009	21798	15134	15168	25632	25632					0.11111867145143606
GVPNSKRPYSK	11	Unmodified	_GVPNSKRPYSK_					0	0	0		ENST00000263636.4_1_2:160711009-160714895:-|nuORF	ENST00000263636.4_1_2:160711009-160714895:-|nuORF	ENST00000263636.4_1_2:160711009-160714895:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.5611877441406	3	411.56305	1231.66732	-0.41612	-0.00017126	-4.2845	-0.0017633	-4.7006	-0.0019346	411.5611272703713	20.696	1.767	20.472	20.02	21.787	-0.22344					80	35	3	0	0	0	1.0259	1	564	564		31.068	4.0208	1	285030			22010	11538	15135	15169	25633	25633					0.06075293174649232
GVPPLLKS	8	Unmodified	_GVPPLLKS_					0	0	0		ENST00000531849.5_1_11:74554845-74617298:-|nuORF;nc|ENSG00000166435|Q6P2D8-5|XRRA1;nc|ENSG00000166435|Q6P2D8-2|XRRA1;nc|ENSG00000166435|Q6P2D8-4|XRRA1;nc|ENSG00000166435|Q6P2D8-3|XRRA1;nc|ENSG00000166435|Q6P2D8|XRRA1;ENSG00000166435|ENST00000684022|XRRA1;ENST00000529926.1_1_11:74562081-74617298:-|nuORF	ENST00000531849.5_1_11:74554845-74617298:-|nuORF	ENST00000531849.5_1_11:74554845-74617298:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	405.758544921875	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.6	1	113.45	112.95	113.95	-0.14429								0	0	0	1.2609	1	13682	13682		8.8223	0	1				22011	7558	15136	15170	25634	25634					0.08871891736760062
GVPPPMPL	8	Unmodified	_GVPPPMPL_					0	0	0		ENST00000461735.1_2_7:150773431-150773557:+|nuORF	ENST00000461735.1_2_7:150773431-150773557:+|nuORF	ENST00000461735.1_2_7:150773431-150773557:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5426330566406	2	404.2253	806.436046	0.47743	0.00019299	-1.1484	-0.00046422	-0.67099	-0.00027123	404.22750522020334	20.146	0.23425	19.978	19.864	20.098	-0.16774					8	4	3	0	0	0	0.027866	1	498	498		24.504	7.799	1	21336			22012	14690	15137	15171	25635	25635					0.025085739392466166
GVPRAPKW	8	Unmodified	_GVPRAPKW_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MSMS	OPSCC_39_ClassI_Rep-3	3	455.7642517089844	2	455.766512	909.518471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.734	1	22.808	22.308	23.308	0.073954								0	0	0	0.68408	1	782	782		42.474	5.3154	1		+		22013	28261	15138	15172	25636	25636					0.06009232062410774
GVPRVRSK	8	Unmodified	_GVPRVRSK_					0	0	0		ENST00000502536.5_1_5:38845996-38846116:+|nuORF	ENST00000502536.5_1_5:38845996-38846116:+|nuORF	ENST00000502536.5_1_5:38845996-38846116:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7828369140625	2	449.782693	897.550834	0.37634	0.00016927	-0.13309	-5.9861E-05	0.24326	0.00010941	449.7824362422643	18.494	0.39462	18.363	18.154	18.549	-0.13148					17	7	3	0	0	0	1.0009	1	284	284		37.159	10.363	1	187030			22014	15673	15139	15173	25637	25637					0.09796019465420613
GVPTVGAAAR	10	Unmodified	_GVPTVGAAAR_					0	0	0		ENST00000254998.2_1_20:23331562-23334670:+|nuORF	ENST00000254998.2_1_20:23331562-23334670:+|nuORF	ENST00000254998.2_1_20:23331562-23334670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.2848815917969	2	449.758884	897.503215	-0.72415	-0.00032569	0.27427	0.00012335	-0.44988	-0.00020234	449.7590214607247	35.123	0.63489	35.101	34.751	35.386	-0.021767					33	16	3	0	0	0	0.03519	1	2614	2614		44.117	17.321	1	382020			22015	11387	15140	15174	25638	25638					0.05036320474562217
GVPVPQGVMA	10	Unmodified	_GVPVPQGVMA_					0	0	0		ENST00000563992.1_1_16:8768489-8829683:+|nuORF	ENST00000563992.1_1_16:8768489-8829683:+|nuORF	ENST00000563992.1_1_16:8768489-8829683:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7591552734375	2	477.757495	953.500437	-0.095319	-4.5539E-05	3.69	0.0017629	3.5946	0.0017174	477.75903629505365	23.084	0.92888	23.023	22.798	23.727	-0.060862					45	21	4	0	0	0	1.0665	1	863	863		37.159	1.5408	1	599020			22016	16879	15141	15175	25639	25639					0.021827290254009313
GVPVVAPLT	9	Unmodified	_GVPVVAPLT_					0	0	0			REV__nc|ENSG00000116809|Q13105-2|ZBTB17	REV__nc|ENSG00000116809|Q13105-2|ZBTB17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.7618713378906	2	426.763104	851.511654	0.84029	0.0003586	-3.7301	-0.0015919	-2.8898	-0.0012333	426.76140343223176	20.814	0.73745	20.882	20.612	21.349	0.068901					26	14	2	0	0	0	0.88411	1	557	557		33.516	0	1	350150	+		22017	36593	15142	15176	25640	25640					0.0799587439116749
GVPVVAPLT	9	Unmodified	_GVPVVAPLT_					0	0	0			REV__nc|ENSG00000116809|Q13105-2|ZBTB17	REV__nc|ENSG00000116809|Q13105-2|ZBTB17	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	426.763104	851.511654	-1.2829	-0.0005475	-1.6487	-0.0007036	-2.9316	-0.0012511	426.76230401475215	20.863	0.53536	20.863	20.562	21.097	0	-0.014552	0.00087884	NaN	33.516	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333770	+		22018	36593	15142	15176							0.0799587439116749
GVPVVAPLT	9	Unmodified	_GVPVVAPLT_					0	0	0			REV__nc|ENSG00000116809|Q13105-2|ZBTB17	REV__nc|ENSG00000116809|Q13105-2|ZBTB17	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.763104	851.511654	-0.47912	-0.00020447	-2.5037	-0.0010685	-2.9828	-0.001273	426.7619222476426	20.977	0.72778	20.887	20.675	21.403	-0.090092	0.00949	0.00014907	NaN	33.516	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363670	+		22019	36593	15142	15176							0.0799587439116749
GVPVVAPLT	9	Unmodified	_GVPVVAPLT_					0	0	0			REV__nc|ENSG00000116809|Q13105-2|ZBTB17	REV__nc|ENSG00000116809|Q13105-2|ZBTB17	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	426.763104	851.511654	0.84029	0.0003586	-3.7301	-0.0015919	-2.8898	-0.0012333	426.76140343223176	20.814	0.73745	20.882	20.612	21.349	0.068901	0.005062	-0.0008977	NaN	33.516	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350150	+		22020	36593	15142	15176							0.0799587439116749
GVPYLRAPG	9	Unmodified	_GVPYLRAPG_					0	0	0		ENST00000526020.5_1_11:10876539-10877751:-|nuORF;ENST00000528289.5_2_11:10876542-10879441:-|nuORF;ENST00000413761.6_1_11:10876542-10877800:-|nuORF	ENST00000526020.5_1_11:10876539-10877751:-|nuORF	ENST00000526020.5_1_11:10876539-10877751:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2613830566406	2	465.263802	928.513051	-0.55006	-0.00025592	-3.7556	-0.0017474	-4.3057	-0.0020033	465.2618029029249	22.536	0.92738	22.536	22.106	23.033	0					42	19	3	0	0	0	0.67308	1	804	804		47.916	12.715	1	577860			22021	13849	15143	15177	25641	25641					0.04593508479956654
GVQGPTEAGL	10	Unmodified	_GVQGPTEAGL_					0	0	0			REV__ENST00000309877.11_3_19:50166730-50168177:-|nuORF	REV__ENST00000309877.11_3_19:50166730-50168177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.740234375	2	464.740357	927.46616	0.85971	0.00039954	2.8168	0.0013091	3.6765	0.0017086	464.73971242061424	52.632	0.89249	52.723	52.404	53.297	0.091938					67	23	5	0	0	0	0.57594	1	5575	5575		79.713	0.26157	1	2300200	+		22022	30171	15144	15178	25642	25642					-0.0004739586186133238
GVQLTNPFYSI	11	Unmodified	_GVQLTNPFYSI_					0	0	0		ENST00000491811.5_1_1:68608485-68620847:-|nuORF;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.55047607421875	3	413.552039	1237.63429	-0.32442	-0.00013416	-3.6555	-0.0015117	-3.9799	-0.0016459	413.55056734704164	29.31	1.3514	29.388	28.865	30.216	0.078344					51	33	2	0	0	0	0.95911	1	1760	1760		45.908	8.3999	1	4836100			22023	3571	15145	15179	25643	25643					0.02497666331964865
GVQPLLFLLWP	11	Unmodified	_GVQPLLFLLWP_					0	0	0			REV__ENST00000563532.1_1_16:34787289-34787544:+|nuORF	REV__ENST00000563532.1_1_16:34787289-34787544:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8823852539062	2	641.881542	1281.74853	0.76256	0.00048947	0.59467	0.00038171	1.3572	0.00087118	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0119	1	11854	11854		34.173	2.6427	1	3421300	+		22024	35230	15146	15180	25644	25644					0.11892600884698368
GVQVQNILT	9	Unmodified	_GVQVQNILT_					0	0	0			REV__ZNF644|p.E223Q|1|0.17|ENSG00000122482|chr1:90940687-90940687|C/G|missense_variant	REV__ZNF644|p.E223Q|1|0.17|ENSG00000122482|chr1:90940687-90940687|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.31243896484375	2	486.279649	970.544745	0.64436	0.00031334	1.69	0.00082179	2.3343	0.0011351	486.2806875000977	40.541	0.67565	40.429	40.278	40.954	-0.11222					25	18	2	0	0	0	0.024381	1	3537	3537		29.15	8.2026	1	362290	+		22025	37814	15147	15181	25645	25645					0.05829456443234449
GVQWWSHT	8	Unmodified	_GVQWWSHT_					0	0	0		nc|ENSG00000103546|P23975-3|SLC6A2	nc|ENSG00000103546|P23975-3|SLC6A2	nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2879638671875	2	500.735409	999.456264	-0.35459	-0.00017756	4.325	0.0021657	3.9704	0.0019881	500.73760534019556	24.029	1.146	24.029	23.283	24.429	0					41	26	3	0	0	0	0.027866	1	1003	1003		31.955	3.7006	1	219170			22026	18141	15148	15182	25646	25646					-0.04348539076590896
GVRAKIPP	8	Unmodified	_GVRAKIPP_					0	0	0			REV__ENST00000606089.1_1_5:133340855-133341212:+|nuORF	REV__ENST00000606089.1_1_5:133340855-133341212:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.900390625	2	419.268887	836.523222	2.6088	0.0010938	-1.553	-0.00065115	1.0558	0.00044265	419.2682295403964	18.948	0.49434	18.714	18.533	19.027	-0.23345					16	9	3	0	0	0	0.027866	1	330	330		14.664	6.4328	1	38564	+		22027	35926	15149	15183	25647	25647					0.0984211620516362
GVRARVLQ	8	Unmodified	_GVRARVLQ_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7825622558594	2	449.782693	897.550834	4.0094	0.0018033	-3.8148	-0.0017158	0.19456	8.751E-05	449.78081552936095	18.462	0.54049	18.526	18.353	18.893	0.063307					22	10	3	0	0	0	1.0338	1	262	262		31.955	2.7848	1	174740			22028	4979	15150	15184	25648	25648					0.09796019465420613
GVRERKAR	8	Unmodified	_GVRERKAR_					0	0	0			REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.27996826171875	2	486.296499	970.578445	-0.70926	-0.00034491	1.9616	0.00095392	1.2523	0.00060901	486.2969450403643	23.51	0.6609	23.449	23.152	23.813	-0.060862					35	15	4	0	0	0	0.027866	1	911	911		53.351	16.192	1	495400	+		22029	36538	15151	15185	25649	25649					0.09197922725650187
GVRGAVRP	8	Unmodified	_GVRGAVRP_					0	0	0		ENST00000308893.8_1_16:29985383-29985953:+|nuORF	ENST00000308893.8_1_16:29985383-29985953:+|nuORF	ENST00000308893.8_1_16:29985383-29985953:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.24853515625	2	406.248486	810.48242	0.98045	0.00039831	-0.66778	-0.00027128	0.31267	0.00012702	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0239	1	11085	11085		33.516	0	1	123310000			22030	12036	15152	15186	25650	25650					0.06959774885558545
GVRGKITQ	8	Unmodified	_GVRGKITQ_					0	0	0			REV__nc|ENSG00000198055|P43250-3|GRK6	REV__nc|ENSG00000198055|P43250-3|GRK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.78448486328125	2	429.761426	857.5083	-0.31741	-0.00013641	-0.40639	-0.00017465	-0.7238	-0.00031106	429.76129893483585	26.639	0.29769	26.403	26.197	26.495	-0.23603					12	7	2	0	0	0	0.027866	1	1391	1391		25.45	0	1	68732	+		22031	28379	15153	15187	25651	25651					0.07384624337169043
GVRGPPAR	8	Unmodified	_GVRGPPAR_					0	0	0			REV__nc|ENSG00000187624|Q6ZQX7-2|LIAT1	REV__nc|ENSG00000187624|Q6ZQX7-2|LIAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9144287109375	2	405.240661	808.46677	0.51911	0.00021037	2.0203	0.0008187	2.5394	0.0010291	405.24155736712237	20.488	0.34551	20.321	20.049	20.395	-0.16774					9	6	2	0	0	0	0.027866	1	536	536		12.959	5.7658	1	18768	+		22032	27950	15154	15188	25652	25652					0.05487488368510185
GVRLHDEAE	9	Unmodified	_GVRLHDEAE_					0	0	0			REV__ENST00000468812.5_1_7:44841357-44841513:+|nuORF	REV__ENST00000468812.5_1_7:44841357-44841513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8247680664062	2	513.254163	1024.49377	-1.1577	-0.0005942	-0.055561	-2.8517E-05	-1.2133	-0.00062272	513.7546289715868	39.901	0.13737	39.924	39.84	39.978	0.023727					5	3	2	0	0	0	0.024292	1	3419	3419		68.787	15.85	1	55544	+		22033	33114	15155	15189	25653	25653					-0.01749492601629754
GVRQYFLDLAL	11	Unmodified	_GVRQYFLDLAL_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1;ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.720458984375	3	432.243317	1293.70812	0.27114	0.0001172	0.94281	0.00040752	1.2139	0.00052472	432.2436188140959	30.666	0.71196	30.516	30.219	30.931	-0.14952					41	16	4	0	0	0	0.024731	1	1973	1973		37.508	14.13	1	196010			22034	4046	15156	15190	25654	25654					0.07301634494274367
GVRSLWSRRHL	11	Unmodified	_GVRSLWSRRHL_					0	0	0			REV__ENST00000530047.5_1_8:145584671-145584875:+|nuORF	REV__ENST00000530047.5_1_8:145584671-145584875:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	3	456.265338	1365.77419	-0.29417	-0.00013422	-2.6079	-0.0011899	-2.902	-0.0013241	456.59925266354105	23.197	0.25505	23.136	22.935	23.19	-0.060862					11	5	3	0	0	0	0.024726	1	865	865		38.714	9.1633	1	18489	+		22035	34527	15157	15191	25655	25655					0.10592888179689908
GVRSVHVD	8	Unmodified	_GVRSVHVD_					0	0	0			REV__ENSG00000006016|ENST00000392386|CRLF1	REV__ENSG00000006016|ENST00000392386|CRLF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.26934814453125	2	434.735409	867.456264	-0.61402	-0.00026694	1.1108	0.00048291	0.49678	0.00021597	434.735719386251	23.825	0.51682	23.769	23.475	23.992	-0.055799					20	11	2	0	0	0	0.027866	1	927	927		37.159	12.956	1	51772	+		22036	19818	15158	15192	25656	25656					0.017234609234265008
GVRTTFDL	8	Unmodified	_GVRTTFDL_					0	0	0			REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7447814941406	2	454.745442	907.476331	0.63166	0.00028725	-1.4842	-0.00067495	-0.85257	-0.0003877	454.744633969462	97.413	1.6833	97.422	96.795	98.478	0.0089111					83	38	3	0	0	0	0.97924	1	12443	12443		40.573	0	1	250170	+		22037	26714	15159	15193	25657	25657					0.01889211863363016
GVRTTFDL	8	Unmodified	_GVRTTFDL_					0	0	0			REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	454.745442	907.476331	0.36146	0.00016437	-1.2384	-0.00056316	-0.87694	-0.00039879	454.7447774284476	97.221	1.6099	97.221	96.748	98.358	0	-0.14102	0.0002054	NaN	40.573	85	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269640	+		22038	26714	15159	15193							0.01889211863363016
GVRTTFDL	8	Unmodified	_GVRTTFDL_					0	0	0			REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	REV__ENST00000544478.1_1_16:67040601-67043042:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	454.745442	907.476331	0.63166	0.00028725	-1.4842	-0.00067495	-0.85257	-0.0003877	454.744633969462	97.413	1.6833	97.422	96.795	98.478	0.0089111	0.060854	-1.8183E-05	NaN	40.573	83	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250170	+		22039	26714	15159	15193							0.01889211863363016
GVRVIAIII	9	Unmodified	_GVRVIAIII_					0	0	0		ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000183780|Q8IY50|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.3292541503906	2	477.328945	952.643337	0.55973	0.00026718	-0.35501	-0.00016946	0.20472	9.7718E-05	477.3286239558356	78.319	2.5845	78.319	78.042	80.626	0					138	61	4	0	0	0	0.55828	1	9684	9684		55.504	0	1	3617800			22040	9276	15160	15194	25658	25658					0.16512104478943002
GVRVIAIII	9	Unmodified	_GVRVIAIII_					0	0	0		ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000183780|Q8IY50|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.3289489746094	2	477.328945	952.643337	0.56814	0.00027119	-0.40108	-0.00019145	0.16706	7.9743E-05	477.3286412961257	78.544	2.5418	78.352	78.016	80.558	-0.1921					152	60	3	0	0	0	0.80658	1	9688	9688		38.806	0	1	3530800			22041	9276	15160	15194	25659	25659					0.16512104478943002
GVRVIAIII	9	Unmodified	_GVRVIAIII_					0	0	0		ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000183780|Q8IY50|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.3291015625	2	477.328945	952.643337	-0.068032	-3.2473E-05	0.2106	0.00010053	0.14257	6.8053E-05	477.3289054610907	78.443	2.1561	78.459	78.155	80.311	0.015907					129	51	4	0	0	0	0.52323	1	9641	9641		57.811	2.3071	1	3587800			22042	9276	15160	15194	25660	25660					0.16512104478943002
GVRVREPSI	9	Unmodified	_GVRVREPSI_					0	0	0			REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.78863525390625	2	506.79854	1011.58253	-1.0159	-0.00051484	-3.7357	-0.0018932	-4.7516	-0.0024081	507.29816660420494	48.93	0.29017	49.004	48.842	49.133	0.074196					11	7	2	0	0	0	0.024319	1	4958	4958		47.657	0	1	270320	+		22043	25934	15161	15195	25661	25661					0.0771996742871579
GVSAKLKRWKK	11	Unmodified	_GVSAKLKRWKK_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7718811035156	3	434.278585	1299.81392	-0.70543	-0.00030635	0.57517	0.00024978	-0.13026	-5.6569E-05	434.61186813809985	25.344	0.27656	25.31	25.238	25.515	-0.034395					9	6	2	0	0	0	0.024828	1	1183	1183		13.508	0	1	22830			22044	1153	15162	15196	25662	25662					0.17601015130389897
GVSCAHSSW	9	Unmodified	_GVSCAHSSW_					0	0	0			REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF	REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2367248535156	2	467.197802	932.381051	-0.35663	-0.00016662	1.6469	0.00076941	1.2902	0.0006028	467.1983851373616	29.049	0.83722	29.052	28.672	29.509	0.0031357					23	20	2	0	0	0	0.024294	1	1778	1778		29.15	0	1	61509	+		22045	29780	15163	15197	25663	25663					-0.08784464599318653
GVSCRLAAP	9	Unmodified	_GVSCRLAAP_					0	0	0			REV__ENST00000457573.5_2_3:51706395-51708348:+|nuORF	REV__ENST00000457573.5_2_3:51706395-51708348:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.2474365234375	2	437.234187	872.453822	-0.33755	-0.00014759	-0.17824	-7.7933E-05	-0.51579	-0.00022552	437.23397347088127	35.064	0.36861	35.064	34.867	35.235	0					15	9	2	0	0	0	0.024262	1	2693	2693		38.806	0	1	72175	+		22046	32810	15164	15198	25664	25664					0.012492891941064954
GVSDKEINS	9	Unmodified	_GVSDKEINS_					0	0	0		COBLL1|p.N1043I|1|0.13|ENSG00000082438|chr2:164694492-164694492|T/A|missense_variant	COBLL1|p.N1043I|1|0.13|ENSG00000082438|chr2:164694492-164694492|T/A|missense_variant	COBLL1|p.N1043I|1|0.13|ENSG00000082438|chr2:164694492-164694492|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7619934082031	2	474.735271	947.45599	0.84183	0.00039965	0.076895	3.6505E-05	0.91873	0.00043615	474.7356083748344	47.508	0.38731	47.355	47.089	47.476	-0.15301					14	10	2	0	0	0	0.024381	1	4745	4745		29.15	0	1	122400			22047	466	15165	15199	25665	25665					-0.01984003587085681
GVSDNRNP	8	Unmodified	_GVSDNRNP_					0	0	0			REV__ENST00000513140.5_1_4:40946930-40947002:-|nuORF	REV__ENST00000513140.5_1_4:40946930-40947002:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.24798583984375	2	429.706848	857.399144	-0.27754	-0.00011926	-0.69194	-0.00029733	-0.96948	-0.00041659	429.70450156858215	37.401	0.35823	37.192	37.114	37.472	-0.2092					11	8	2	0	0	0	0.027866	1	3011	3011		57.811	0	1	36113	+		22048	34147	15166	15200	25666	25666					-0.03526006352956301
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	OPSCC_39_ClassI_Rep-1	1	487.2694396972656	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.625	1	53.625	53.125	54.125	0								0	0	0	0.096778	1	5812	5812		93.143	28.936	1				22049	5643	15167	15201	25667	25667					0.03664866063570571
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	OPSCC_39_ClassI_Rep-1	1	487.2687072753906	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.691	1	53.691	53.191	54.191	0								0	0	0	0.10825	1	5823	5823		90.601	26.394	1				22050	5643	15167	15201	25668	25668					0.03664866063570571
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	OPSCC_39_ClassI_Rep-1	1	487.2683410644531	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.777	1	53.777	53.277	54.277	0								0	0	0	0.15405	1	5837	5837		80.455	27.518	1				22051	5643	15167	15201	25669	25669					0.03664866063570571
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	OPSCC_39_ClassI_Rep-2	2	487.26910400390625	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.707	1	53.56	53.06	54.06	-0.14723								0	0	0	0.23308	1	5798	5798		72.879	18.103	1				22052	5643	15167	15201	25670	25670					0.03664866063570571
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	OPSCC_39_ClassI_Rep-2	2	487.2687072753906	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.781	1	53.634	53.134	54.134	-0.14723								0	0	0	0.096778	1	5810	5810		93.143	23.516	1				22053	5643	15167	15201	25671	25671					0.03664866063570571
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MSMS	OPSCC_39_ClassI_Rep-2	2	487.2684020996094	2	487.269281	972.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.865	1	53.718	53.218	54.218	-0.14723								0	0	0	0.14369	1	5824	5824		82.75	26.029	1				22054	5643	15167	15201	25672	25672					0.03664866063570571
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2690734863281	2	487.269281	972.52401	-0.97424	-0.00047472	0.38981	0.00018994	-0.58443	-0.00028477	487.2693881556766	53.511	1.1692	53.607	53.017	54.186	0.095669					71	32	3	0	0	0	0.14181	2	5711	5711;5723		101.25	41.134	1	4422000			22055	5643	15167	15201	25673;25674	25673					0.03664866063570571
GVSEKIKK	8	Unmodified	_GVSEKIKK_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2280578613281	2	444.779285	887.544017	-0.73899	-0.00032869	0.72813	0.00032386	-0.010862	-4.831E-06	444.7794336895895	26.218	0.48486	25.982	25.677	26.162	-0.23603					22	13	2	0	0	0	0.027866	1	1340	1340		44.117	21.074	1	345460			22056	6043	15168	15202	25675	25675					0.09574661794192707
GVSEKIKK	8	Unmodified	_GVSEKIKK_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	444.779285	887.544017	-0.27208	-0.00012102	0.32753	0.00014568	0.055454	2.4665E-05	444.7793816259275	25.9	0.42386	25.729	25.413	25.837	-0.17078	-0.17882	-0.00028558	NaN	44.117	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84228			22057	6043	15168	15202							0.09574661794192707
GVSFALLR	8	Unmodified	_GVSFALLR_					0	0	0		ENSG00000109158|ENST00000264318|GABRA4	ENSG00000109158|ENST00000264318|GABRA4	ENSG00000109158|ENST00000264318|GABRA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.7205810546875	2	431.760895	861.507237	-0.44367	-0.00019156	0.30557	0.00013193	-0.1381	-5.9626E-05	431.76105646388555	30.513	0.29344	30.335	30.203	30.497	-0.17817					9	6	2	0	0	0	0.027866	1	1968	1968		23.042	0	1	38331			22058	2965	15169	15203	25676	25676					0.07094409968283344
GVSFGRNL	8	Unmodified	_GVSFGRNL_					0	0	0			REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.216796875	2	425.232502	848.450451	-0.24445	-0.00010395	0.86668	0.00036854	0.62223	0.00026459	425.23271087293153	27.079	1.1248	26.837	26.298	27.423	-0.24217					39	26	3	0	0	0	0.027866	1	1464	1464		26.796	15.285	1	214820	+		22059	34161	15170	15204	25677	25677					0.020163624117458312
GVSGLSAASP	10	Unmodified	_GVSGLSAASP_					0	0	0		ENST00000262487.4_1_20:13260542-13273056:+|nuORF	ENST00000262487.4_1_20:13260542-13273056:+|nuORF	ENST00000262487.4_1_20:13260542-13273056:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.24578857421875	2	423.2218	844.429047	-1.3199	-0.00055861	2.4216	0.0010249	1.1017	0.00046625	423.2228773759397	30.601	0.6183	30.601	30.343	30.961	0					21	14	2	0	0	0	0.03519	1	1993	1993		15.642	8.4485	1	45413			22060	11502	15171	15205	25678	25678					0.0006093259237331949
GVSGLSAASP	10	Unmodified	_GVSGLSAASP_					0	0	0		ENST00000262487.4_1_20:13260542-13273056:+|nuORF	ENST00000262487.4_1_20:13260542-13273056:+|nuORF	ENST00000262487.4_1_20:13260542-13273056:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	423.2218	844.429047	-0.5339	-0.00022596	2.232	0.00094464	1.6981	0.00071868	423.2229238338683	30.636	0.41438	30.645	30.373	30.787	0.0086708	0.021755	-5.9688E-05	NaN	15.642	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62931			22061	11502	15171	15205							0.0006093259237331949
GVSGLWPAPE	10	Unmodified	_GVSGLWPAPE_					0	0	0		ENST00000318003.11_1_19:14041204-14041669:+|nuORF	ENST00000318003.11_1_19:14041204-14041669:+|nuORF	ENST00000318003.11_1_19:14041204-14041669:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7927551269531	2	506.758549	1011.50255	-0.23935	-0.00012129	-3.3556	-0.0017005	-3.5949	-0.0018218	506.7568391150058	44.01	0.22021	44.047	43.888	44.108	0.0369					7	5	2	0	0	0	0.03519	1	4102	4102		53.351	9.2347	1	139000			22062	12168	15172	15206	25679	25679					-0.0027451896515913177
GVSGLWPAPE	10	Unmodified	_GVSGLWPAPE_					0	0	0		ENST00000318003.11_1_19:14041204-14041669:+|nuORF	ENST00000318003.11_1_19:14041204-14041669:+|nuORF	ENST00000318003.11_1_19:14041204-14041669:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.758549	1011.50255	-1.0408	-0.00052741	-4.5638	-0.0023127	-5.6046	-0.0028402	506.75689572887677	44.407	0.35046	44.162	43.94	44.291	-0.2444	0.057815	-0.00059566	NaN	35.618	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117560			22063	12168	15172	15206							-0.0027451896515913177
GVSHHVCL	8	Unmodified	_GVSHHVCL_					0	0	0			REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF	REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.23834228515625	2	426.213255	850.411957	-0.50161	-0.00021379	1.3787	0.00058763	0.87712	0.00037384	426.212568353242	29.696	0.29806	29.523	29.447	29.745	-0.17258					8	6	2	0	0	0	0.027866	1	1829	1829		20.482	4.8456	1	32019	+		22064	34244	15173	15207	25680	25680					-0.019232664944070166
GVSHHVCL	8	Unmodified	_GVSHHVCL_					0	0	0			REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF	REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.213255	850.411957	-0.01576	-6.717E-06	-6.0471	-0.0025774	-6.0629	-0.0025841	426.21009867227855	29.262	0.54481	29.341	28.865	29.41	0.078344	-0.091168	-0.0030882	NaN	20.482	13	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31145	+		22065	34244	15173	15207							-0.019232664944070166
GVSIAVSLLL	10	Unmodified	_GVSIAVSLLL_					0	0	0		ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3088073730469	2	486.310418	970.606283	0.65888	0.00032042	-3.7727	-0.0018347	-3.1138	-0.0015143	486.30853464130655	20.705	0.78728	20.509	20.286	21.073	-0.19577					44	15	4	0	0	0	0.65054	1	573	573		71.296	7.9894	1	1973800			22066	10437	15174	15208	25681	25681					0.11980388142535503
GVSIAVSLLL	10	Unmodified	_GVSIAVSLLL_					0	0	0		ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.30902099609375	2	486.310418	970.606283	-0.34119	-0.00016592	-2.842	-0.0013821	-3.1832	-0.001548	486.3090092491961	20.812	0.69344	20.588	20.365	21.058	-0.22344					37	13	4	0	0	0	0.79525	1	573	573		60.972	7.6205	1	1831400			22067	10437	15174	15208	25682	25682					0.11980388142535503
GVSIRLSH	8	Unmodified	_GVSIRLSH_					0	0	0			REV__ENSG00000171302|ENST00000392446|CANT1	REV__ENSG00000171302|ENST00000392446|CANT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2724304199219	2	434.753601	867.49265	0.0532	2.3129E-05	1.537	0.00066821	1.5902	0.00069134	434.7547456427725	33.863	0.68008	33.92	33.693	34.373	0.056568					18	16	2	0	0	0	0.027866	1	2425	2425		31.955	7.7521	1	97889	+		22068	26559	15175	15209	25683	25683					0.053603378201387386
GVSIRLSH	8	Unmodified	_GVSIRLSH_					0	0	0			REV__ENSG00000171302|ENST00000392446|CANT1	REV__ENSG00000171302|ENST00000392446|CANT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.753601	867.49265	-0.013167	-5.7242E-06	1.2257	0.00053288	1.2125	0.00052716	434.75392782152994	34.049	0.39459	34.049	33.855	34.25	0	0.090677	-0.00038951	NaN	31.955	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103060	+		22069	26559	15175	15209							0.053603378201387386
GVSIRLSH	8	Unmodified	_GVSIRLSH_					0	0	0			REV__ENSG00000171302|ENST00000392446|CANT1	REV__ENSG00000171302|ENST00000392446|CANT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	434.753601	867.49265	-0.031407	-1.3654E-05	2.2752	0.00098916	2.2438	0.00097551	434.754095973993	33.91	0.47583	33.906	33.676	34.152	-0.0045624	-0.052313	0.00052305	NaN	31.955	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64547	+		22070	26559	15175	15209							0.053603378201387386
GVSKLKKI	8	Unmodified	_GVSKLKKI_					0	0	0			REV__nc|ENSG00000100206|Q14565-2|DMC1	REV__nc|ENSG00000100206|Q14565-2|DMC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.9337158203125	2	436.80002	871.585488	0.44256	0.00019331	-0.12233	-5.3435E-05	0.32022	0.00013987	436.79988458542715	21.097	0.49046	20.902	20.533	21.024	-0.19577					13	9	2	0	0	0	0.027866	1	589	589		21.702	5.2292	1	25439	+		22071	21064	15176	15210	25684	25684					0.14455842553513776
GVSKPIGVSK	10	Unmodified	_GVSKPIGVSK_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.27960205078125	2	486.297842	970.581131	-0.7975	-0.00038782	0.64732	0.00031479	-0.15019	-7.3035E-05	486.29798368344166	23.406	0.45647	23.483	23.234	23.69	0.076239					25	10	3	0	0	0	0.03519	1	860	860		61.691	4.9702	1	450220			22072	9912	15177	15211	25685	25685					0.09466333339946686
GVSKPVTI	8	Unmodified	_GVSKPVTI_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073974609375	2	400.747453	799.480354	-0.6287	-0.00025195	1.5481	0.00062041	0.91942	0.00036845	400.74791585290905	27.834	0.57255	27.682	27.312	27.885	-0.15195					16	13	2	0	0	0	0.027866	1	1531	1531		17.365	4.4058	1	113600			22073	9912	15178	15212	25686	25686					0.07259301357089498
GVSKPVTI	8	Unmodified	_GVSKPVTI_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	400.747453	799.480354	0.51255	0.0002054	-0.27552	-0.00011041	0.23703	9.4988E-05	400.7472733090908	27.859	0.55599	27.614	27.203	27.759	-0.24524	0.016738	-0.00058055	NaN	31.955	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82953			22074	9912	15178	15212							0.07259301357089498
GVSKPVTI	8	Unmodified	_GVSKPVTI_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	400.747453	799.480354	0.41322	0.0001656	0.52381	0.00020992	0.93703	0.00037551	400.74753303158406	27.664	0.58976	27.496	27.099	27.689	-0.16816	-0.10103	6.0108E-05	NaN	31.955	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108880			22075	9912	15178	15212							0.07259301357089498
GVSLAHQRS	9	Unmodified	_GVSLAHQRS_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.75921630859375	2	477.759415	953.504277	-0.31069	-0.00014844	-0.097741	-4.6697E-05	-0.40843	-0.00019513	477.7593033193202	38.44	0.681	38.222	37.926	38.607	-0.21849					54	18	4	0	0	0	0.31037	1	3163	3163		74.255	0	1	4367800	+		22076	21946	15179	15213	25687	25687					0.02566534843469981
GVSLEELERRL	11	Unmodified	_GVSLEELERRL_					0	0	0			REV__ENSG00000076604|ENST00000262395|TRAF4	REV__ENSG00000076604|ENST00000262395|TRAF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77984619140625	3	434.245498	1299.71466	-0.38834	-0.00016863	1.1658	0.00050624	0.77745	0.00033761	434.2458777643924	38.723	0.60786	38.723	38.433	39.041	0					30	15	3	0	0	0	0.024734	1	3248	3248		16.53	0	1	180340	+		22077	20570	15180	15214	25688	25688					0.07679527655000129
GVSLTAWSI	9	Unmodified	_GVSLTAWSI_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2769775390625	2	467.255643	932.496732	-0.24673	-0.00011529	-0.65084	-0.00030411	-0.89757	-0.00041939	467.25548757459313	47.409	0.775	47.215	46.814	47.589	-0.19387					64	20	4	0	0	0	0.024262	1	4680	4680		23.042	0	1	1937300			22078	2551	15181	15215	25689	25689					0.027783825231722403
GVSMAHKV	8	Unmodified	_GVSMAHKV_					0	0	0		ENST00000324856.11_1_1:27088777-27089541:+|nuORF	ENST00000324856.11_1_1:27088777-27089541:+|nuORF	ENST00000324856.11_1_1:27088777-27089541:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.7097473144531	2	414.723455	827.432358	-0.30347	-0.00012586	-3.5673	-0.0014795	-3.8708	-0.0016053	414.7218470498993	25.366	1.0428	25.195	24.825	25.867	-0.17078					36	25	2	0	0	0	0.027866	1	1289	1289		17.365	0.89182	1	310150			22079	12263	15182	15216	25690	25690					0.011739041653981985
GVSMGGMLL	9	Unmodified	_GVSMGGMLL_					0	0	0		ABHD3|p.P261Lfs*5|1|0.28|ENSG00000158201|chr18:21659223-21659230|GTTCAGTG/-|frameshift_variant;ENSG00000158201|ENST00000289119|ABHD3	ABHD3|p.P261Lfs*5|1|0.28|ENSG00000158201|chr18:21659223-21659230|GTTCAGTG/-|frameshift_variant	ABHD3|p.P261Lfs*5|1|0.28|ENSG00000158201|chr18:21659223-21659230|GTTCAGTG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.72039794921875	2	432.719524	863.424495	-0.36721	-0.0001589	2.6172	0.0011325	2.25	0.00097362	432.72054382328594	30.728	1.6273	30.55	30.243	31.871	-0.17817					75	39	3	0	0	0	0.88411	1	1979	1979		33.516	3.674	1	1735400			22080	10	15183	15217	25691	25691					-0.01267991146391978
GVSMPGYPKSD	11	Unmodified	_GVSMPGYPKSD_					0	0	0			REV__nc|ENSG00000089597|Q14697-2|GANAB	REV__nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.267578125	2	569.265881	1136.51721	0.31757	0.00018078	2.6125	0.0014872	2.9301	0.001668	569.2673127638058	23.413	2.6043	23.212	21.231	23.835	-0.20193					194	56	4	0	0	0	0.849	1	972	972		54.722	5.1863	1	2615500	+		22081	20856	15184	15218	25692	25692					-0.04558814879305828
GVSMPGYPKSD	11	Unmodified	_GVSMPGYPKSD_					0	0	0			REV__nc|ENSG00000089597|Q14697-2|GANAB	REV__nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2679443359375	2	569.265881	1136.51721	2.7675	0.0015754	0.61477	0.00034997	3.3822	0.0019254	569.2661420939212	18.62	2.7683	18.377	17.478	20.247	-0.24256					129	55	4	0	0	0	0.98542	1	286	286		40.058	0.80534	1	322430	+		22082	20856	15184	15218	25693	25693					-0.04558814879305828
GVSMPGYPKSD	11	Unmodified	_GVSMPGYPKSD_					0	0	0			REV__nc|ENSG00000089597|Q14697-2|GANAB	REV__nc|ENSG00000089597|Q14697-2|GANAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.267578125	2	569.265881	1136.51721	1.542	0.0008778	1.4309	0.00081459	2.9729	0.0016924	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.849	1	935	935		54.722	8.7704	1	2894000	+		22083	20856	15184	15218	25694	25694					-0.04558814879305828
GVSPDPPTEP	10	Unmodified	_GVSPDPPTEP_					0	0	0		nc|ENSG00000154134|Q96MS0-2|ROBO3;ENSG00000154134|ENST00000397801|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.8310241699219	2	498.237647	994.460741	-0.7495	-0.00037343	4.0912	0.0020384	3.3417	0.001665	498.24083360960213	44.81	0.16061	44.558	44.429	44.59	-0.25252					5	3	2	0	0	0	0.03519	1	4185	4185		32.812	0	1	68755			22084	6385	15185	15219	25695	25695					-0.0367111944434555
GVSRDYKT	8	Unmodified	_GVSRDYKT_					0	0	0			REV__ENST00000586487.2_1_18:45396854-45396920:-|nuORF	REV__ENST00000586487.2_1_18:45396854-45396920:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.797119140625	2	463.240524	924.466495	-0.44628	-0.00020673	2.2967	0.0010639	1.8504	0.00085718	463.24111392657744	32.567	0.48651	32.579	32.182	32.669	0.011799					18	12	2	0	0	0	0.027866	1	2235	2235		25.45	0	1	140670	+		22085	35601	15186	15220	25696	25696					0.0012402385799532567
GVSRKPGPL	9	Unmodified	_GVSRKPGPL_					0	0	0			REV__COL4A1|p.G1011R|1|0.38|ENSG00000187498|chr13:110176451-110176451|C/T|missense_variant	REV__COL4A1|p.G1011R|1|0.38|ENSG00000187498|chr13:110176451-110176451|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7662658691406	2	455.777077	909.5396	-0.16706	-7.614E-05	0.34216	0.00015595	0.1751	7.9807E-05	455.7770432604985	22.373	0.89049	22.297	21.939	22.829	-0.075296					45	18	4	0	0	0	0.024263	1	770	770		60.972	18.497	1	289580	+		22086	19511	15187	15221	25697	25697					0.08121197371269773
GVSRPAANL	9	Unmodified	_GVSRPAANL_					0	0	0		ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.26678466796875	2	442.751059	883.487565	0.27448	0.00012153	-3.0194	-0.0013368	-2.7449	-0.0012153	442.7509995595349	25.93	0.66386	26.011	25.749	26.412	0.08009					41	15	5	0	0	0	0.024294	1	1273	1273		37.159	0	1	260550			22087	1768	15188	15222	25698	25698					0.0411603395750717
GVSRPRKE	8	Unmodified	_GVSRPRKE_					0	0	0		ENST00000586972.1_1_17:40266182-40266371:-|nuORF	ENST00000586972.1_1_17:40266182-40266371:-|nuORF	ENST00000586972.1_1_17:40266182-40266371:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2615966796875	2	464.769783	927.525013	-0.34897	-0.00016219	-2.4882	-0.0011564	-2.8371	-0.0013186	464.76831140314493	23.206	0.74695	23.145	22.52	23.267	-0.060862					25	16	2	0	0	0	0.027866	1	809	809		34.173	11.13	1	180800			22088	17260	15189	15223	25699	25699					0.05835125223131854
GVSRPRKE	8	Unmodified	_GVSRPRKE_					0	0	0		ENST00000586972.1_1_17:40266182-40266371:-|nuORF	ENST00000586972.1_1_17:40266182-40266371:-|nuORF	ENST00000586972.1_1_17:40266182-40266371:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.769783	927.525013	-0.55726	-0.000259	-1.042	-0.00048429	-1.5993	-0.00074329	464.76962434047226	23.228	0.34274	23.228	22.94	23.283	0	0.041536	0.00035733	NaN	34.173	18	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215470			22089	17260	15189	15223							0.05835125223131854
GVSRRCSL	8	Unmodified	_GVSRRCSL_					0	0	0		ENST00000562833.1_3_15:83222296-83222671:-|nuORF	ENST00000562833.1_3_15:83222296-83222671:-|nuORF	ENST00000562833.1_3_15:83222296-83222671:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2481384277344	2	439.237261	876.45997	-0.46537	-0.00020441	-0.39992	-0.00017566	-0.86528	-0.00038006	439.2371481249039	33.332	0.099491	33.338	33.288	33.388	0.0066261					4	2	2	0	0	0	0.027866	1	2377	2377		3.6843	0	1	45364			22090	16852	15190	15224	25700	25700					0.016798074256257678
GVSRRGVF	8	Unmodified	_GVSRRGVF_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|63|2|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|63|2|anti-sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|63|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.25250244140625	2	439.253769	876.492984	-1.1335	-0.00049788	-1.6389	-0.0007199	-2.7724	-0.0012178	439.2529593069474	90.17	0.99512	90.015	89.522	90.517	-0.1552					62	23	4	0	0	0	1.0574	1	11019	11019		25.45	3.4903	1	1935000			22091	38009	15191	15225	25701	25701					0.04979757540002083
GVSRVSGSV	9	Unmodified	_GVSRVSGSV_					0	0	0		NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2588195800781	2	424.235242	846.45593	0.15488	6.5705E-05	0.56932	0.00024152	0.72419	0.00030723	424.23527024585775	42.381	0.45221	42.407	42.152	42.605	0.026016					23	12	3	0	0	0	0.024436	1	3794	3794		38.806	22.333	1	240490			22092	18869	15192	15226	25702	25702					0.02656041203579207
GVSRVSGSV	9	Unmodified	_GVSRVSGSV_					0	0	0		NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	424.235242	846.45593	-0.052558	-2.2297E-05	0.47455	0.00020132	0.42199	0.00017902	424.23528564395275	42.299	0.44928	42.299	42.12	42.569	0	-0.059454	-9.2679E-05	NaN	38.806	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355250			22093	18869	15192	15226							0.02656041203579207
GVSRVSGSV	9	Unmodified	_GVSRVSGSV_					0	0	0		NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	NELL1|p.L776V|1|0.08|ENSG00000165973|chr11:21573353-21573353|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	424.235242	846.45593	-0.19968	-8.4712E-05	0.65795	0.00027913	0.45827	0.00019442	424.2354552739258	42.5	0.41678	42.368	42.149	42.565	-0.13219	0.010266	6.2937E-05	NaN	38.806	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429300			22094	18869	15192	15226							0.02656041203579207
GVSSKAYKKMY	11	Unmodified	_GVSSKAYKKMY_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.5206298828125	3	421.225158	1260.65364	0.10593	4.4619E-05	2.6086	0.0010988	2.7145	0.0011434	421.22630166846346	31.808	0.84827	31.623	31.321	32.169	-0.18503					36	19	3	0	0	0	0.024723	1	2153	2153		25.068	0	1	164450	+		22095	28151	15193	15227	25703	25703					0.0337429935120781
GVSSLDKD	8	Unmodified	_GVSSLDKD_					0	0	0		ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.73486328125	2	410.705983	819.397412	-0.11139	-4.575E-05	1.5172	0.00062311	1.4058	0.00057736	410.70691122088357	30.962	0.40386	30.81	30.681	31.085	-0.15231					12	9	2	0	0	0	0.027866	1	1998	1998		18.324	0	1	49493			22096	3180	15194	15228	25704	25704					-0.019510601615706946
GVSSSRSRF	9	Unmodified	_GVSSSRSRF_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.7566223144531	2	491.756872	981.499192	-0.27377	-0.00013463	0.22681	0.00011154	-0.046951	-2.3088E-05	491.7568390573199	23.881	0.82284	23.666	23.266	24.089	-0.21483					51	18	5	0	0	0	0.5973	1	986	986		52.937	1.744	1	1321000	+		22097	27175	15195	15229	25705	25705					0.007702309808564678
GVSSSRSRF	9	Unmodified	_GVSSSRSRF_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7566833496094	2	491.756872	981.499192	1.999	0.00098301	-2.0323	-0.0009994	-0.033316	-1.6383E-05	491.7557413184107	23.774	0.73392	23.583	23.284	24.018	-0.19117					45	16	4	0	0	0	0.37611	2	958	945;958		67.494	14.557	1	1368300	+		22098	27175	15195	15229	25706;25707	25707					0.007702309808564678
GVSSSRSRF	9	Unmodified	_GVSSSRSRF_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	491.756872	981.499192	-0.12208	-6.0032E-05	0.051916	2.553E-05	-0.070159	-3.4501E-05	491.75671061808134	23.764	0.80759	23.584	23.356	24.164	-0.17989	-0.027097	0.00081	NaN	67.494	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1326000	+		22099	27175	15195	15229							0.007702309808564678
GVSSSRSRF	9	Unmodified	_GVSSSRSRF_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	491.756872	981.499192	1.999	0.00098301	-2.0323	-0.0009994	-0.033316	-1.6383E-05	491.7557413184107	23.774	0.73392	23.583	23.284	24.018	-0.19117	-0.028093	-0.0012399	NaN	67.494	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368300	+		22100	27175	15195	15229							0.007702309808564678
GVSVAKHL	8	Unmodified	_GVSVAKHL_					0	0	0			REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENST00000561252.1_1_15:90768241-90768761:+|nuORF	REV__ENSG00000185033|ENST00000411539|SEMA4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9227294921875	2	405.745245	809.475937	-0.061494	-2.4951E-05	0.11853	4.8092E-05	0.057032	2.3141E-05	405.7450830470731	27.018	0.46367	26.776	26.571	27.035	-0.24217					14	10	2	0	0	0	0.027866	1	1433	1433		26.796	10.323	1	47467	+		22101	27725;35169	15196	15230	25708	25708					0.06357836934171246
GVSVAKHL	8	Unmodified	_GVSVAKHL_					0	0	0			REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENST00000561252.1_1_15:90768241-90768761:+|nuORF	REV__ENSG00000185033|ENST00000411539|SEMA4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	2	405.745245	809.475937	0.37577	0.00015247	0.027958	1.1344E-05	0.40373	0.00016381	405.7451931869806	26.897	0.30114	26.729	26.55	26.851	-0.16816					9	6	2	0	0	0	0.027866	1	1421	1421		24.203	17.467	1	44641	+		22102	27725;35169	15196	15230	25709	25709					0.06357836934171246
GVSVLVKYVTF	11	Unmodified	_GVSVLVKYVTF_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.57208251953125	3	404.572663	1210.69616	1.2795	0.00051765	-3.3639	-0.0013609	-2.0844	-0.00084327	404.5712987755108	20.95	0.97989	20.754	20.435	21.415	-0.19577					35	19	2	0	0	0	1.0592	1	611	611		22.562	2.2466	1	802240	+		22103	21424	15197	15231	25710	25710					0.0992401775106373
GVSVNVGLQLL	11	Unmodified	_GVSVNVGLQLL_					0	0	0			REV__ENST00000356554.7_1_1:118070855-118071107:+|nuORF	REV__ENST00000356554.7_1_1:118070855-118071107:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.8338012695312	2	549.829506	1097.64446	-0.0046437	-2.5532E-06	3.595	0.0019767	3.5904	0.0019741	549.8314186511744	105.14	1.5776	105.02	104.74	106.32	-0.12444					108	51	4	0	0	0	0.82076	1	13141	13141		56.434	3.0823	1	3935400	+		22104	30794	15198	15232	25711	25711					0.09954274057213297
GVSVTSSY	8	Unmodified	_GVSVTSSY_					0	0	0			REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.19622802734375	2	400.195251	798.375948	0.93276	0.00037329	-0.82559	-0.0003304	0.10717	4.2888E-05	400.1951375684852	80.381	1.1826	80.143	79.789	80.971	-0.23784					68	28	3	0	0	0	0.94001	3	9643	9597;9643;9657		46.766	14.69	1	6749300	+		22105	37554	15199	15233	25712;25713;25714	25713					-0.03130445190288356
GVSVTSSY	8	Unmodified	_GVSVTSSY_					0	0	0			REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.19677734375	2	400.195251	798.375948	1.3624	0.00054521	-0.039597	-1.5847E-05	1.3228	0.00052936	400.19566925186354	83.823	1.1063	83.611	83.221	84.327	-0.21159					67	25	4	0	0	0	0.94001	2	10083	10083;10117		46.766	7.9603	1	3795100	+		22106	37554	15199	15233	25715;25716	25715					-0.03130445190288356
GVSVTSSY	8	Unmodified	_GVSVTSSY_					0	0	0			REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.196044921875	2	400.195251	798.375948	1.6964	0.00067887	-2.0251	-0.00081042	-0.3287	-0.00013154	400.1946294840402	83.512	1.0624	83.343	83.033	84.096	-0.16916					58	24	3	0	0	0	1.0017	1	10089	10089		37.028	6.5248	1	4784400	+		22107	37554	15199	15233	25717	25717					-0.03130445190288356
GVSVTSSY	8	Unmodified	_GVSVTSSY_					0	0	0			REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.19683837890625	2	400.195251	798.375948	-0.36218	-0.00014494	-2.2745	-0.00091024	-2.6367	-0.0010552	400.1941234050417	80.162	1.196	80.016	79.701	80.897	-0.146					62	28	3	0	0	0	0.94001	3	9594	9594;9619;9632		46.766	15.382	1	1977600	+		22108	37554	15199	15233	25718;25719;25720	25718					-0.03130445190288356
GVSVTSSY	8	Unmodified	_GVSVTSSY_					0	0	0			REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	REV__sp|P0DKA6|VE8E2_HPV18ProteinE8^E2COS=Humanpapillomavirustype18OX=333761PE=3SV=1	MSMS	OPSCC_40_ClassI_Rep-3	6	400.19647216796875	2	400.195251	798.375948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.721	1	83.582	83.082	84.082	-0.1386								0	0	0	0.62214	1	10099	10099		46.766	13.273	1		+		22109	37554	15199	15233	25721	25721					-0.03130445190288356
GVSVVLLD	8	Unmodified	_GVSVVLLD_					0	0	0			REV__ENSG00000128829|ENST00000263791|EIF2AK4	REV__ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.25579833984375	2	401.239461	800.46437	0.8975	0.00036011	0.35556	0.00014267	1.2531	0.00050278	401.2391126346202	47.733	0.50663	47.733	47.464	47.971	0					28	15	3	0	0	0	0.027866	1	4834	4834		12.959	0	1	458400	+		22110	23010	15200	15234	25722	25722					0.05615595120195849
GVSVVLQLI	9	Unmodified	_GVSVVLQLI_					0	0	0			REV__ENSG00000147155|ENST00000495186|EBP	REV__ENSG00000147155|ENST00000495186|EBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.2794189453125	2	464.29731	926.580068	-1.6315	-0.00075749	-2.8545	-0.0013253	-4.4859	-0.0020828	464.2959403524945	51.834	0.66598	51.565	51.203	51.869	-0.26903					22	17	2	0	0	0	0.02435	1	5367	5367		42.396	3.1433	1	226450	+		22111	24532	15201	15235	25723	25723					0.11384118971056978
GVTESLRA	8	Unmodified	_GVTESLRA_					0	0	0			REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	REV__ENST00000327835.7_1_8:81733839-81786971:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.5576477050781	2	416.729792	831.445031	-0.95191	-0.00039669	1.603	0.00066803	0.65112	0.00027134	416.7303296237551	24.673	0.49324	24.626	24.398	24.891	-0.047146					15	10	2	0	0	0	0.027866	1	1066	1066		19.36	0	1	156860	+		22112	30421	15202	15236	25724	25724					0.022566388292943884
GVTGKMTTE	9	Unmodified	_GVTGKMTTE_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7722473144531	2	462.228768	922.442982	-0.35649	-0.00016478	2.5883	0.0011964	2.2318	0.0010316	462.22916871172123	26.82	0.33165	26.807	26.621	26.953	-0.012983					11	7	2	0	0	0	0.024495	1	1373	1373		19.997	0	1	44955			22113	1896	15203	15237	25725	25725					-0.021341579708405334
GVTLLFLGSLN	11	Unmodified	_GVTLLFLGSLN_					0	0	0			REV__PAQR7|p.F315L|1|0.35|ENSG00000182749|chr1:25862895-25862895|A/C|missense_variant	REV__PAQR7|p.F315L|1|0.35|ENSG00000182749|chr1:25862895-25862895|A/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3295288085938	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.013	1	11564	11564		33.922	1.1092	1	14057000	+		22114	37346	15204	15238	25726	25726					0.0881915819995811
GVTLVGSLGIL	11	Unmodified	_GVTLVGSLGIL_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8024291992188	2	514.82115	1027.62775	0.97481	0.00050185	1.698	0.00087416	2.6728	0.001376	514.8219463753999	59.693	0.2633	59.693	59.482	59.745	0					9	6	2	0	0	0	0.024759	1	6835	6835		42.396	9.5837	1	255450	+		22115	19906	15205	15239	25727	25727					0.11503773171239118
GVTLVYSL	8	Unmodified	_GVTLVYSL_					0	0	0			REV__ENSG00000166881|ENST00000300128|NEMP1	REV__ENSG00000166881|ENST00000300128|NEMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2462158203125	2	426.247286	850.48002	0.090279	3.8481E-05	-2.9325	-0.00125	-2.8422	-0.0012115	426.2459398709793	86.867	2.4687	86.822	85.947	88.415	-0.045105					139	58	5	0	0	0	1.0338	1	10920	10920		31.955	1.4512	1	11102000	+		22116	26070	15206	15240	25728	25728					0.04879881637236849
GVTLVYSL	8	Unmodified	_GVTLVYSL_					0	0	0			REV__ENSG00000166881|ENST00000300128|NEMP1	REV__ENSG00000166881|ENST00000300128|NEMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2461853027344	2	426.247286	850.48002	0.4124	0.00017578	-3.2057	-0.0013664	-2.7933	-0.0011906	426.2457939199312	86.761	2.0846	86.782	86.157	88.241	0.021263					140	49	6	0	0	0	1.043	1	10822	10822		30.504	3.7075	1	10449000	+		22117	26070	15206	15240	25729	25729					0.04879881637236849
GVTNPYMVY	9	Unmodified	_GVTNPYMVY_					0	0	0		MAS1L|p.A104V|1|0.3|ENSG00000204687|chr6:29487592-29487592|G/A|missense_variant	MAS1L|p.A104V|1|0.3|ENSG00000204687|chr6:29487592-29487592|G/A|missense_variant	MAS1L|p.A104V|1|0.3|ENSG00000204687|chr6:29487592-29487592|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7911376953125	2	522.24696	1042.47937	-1.1072	-0.00057825	-2.8715	-0.0014996	-3.9787	-0.0020779	522.2453869530277	20.183	1.8788	20.183	19.268	21.146	0					70	38	3	0	0	0	0.024354	1	620	620		30.504	0	1	78773			22118	17952	15207	15241	25730	25730					-0.040172810741296416
GVTRDVPR	8	Unmodified	_GVTRDVPR_					0	0	0		ENST00000224807.9_1_10:102792130-102794459:+|nuORF	ENST00000224807.9_1_10:102792130-102794459:+|nuORF	ENST00000224807.9_1_10:102792130-102794459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7901306152344	2	450.256508	898.498464	0.97494	0.00043897	-0.71882	-0.00032365	0.25612	0.00011532	450.25597591812044	20.353	0.62977	20.157	19.805	20.435	-0.19577					20	12	3	0	0	0	0.027866	1	497	497		50.025	9.4519	1	71294			22119	11203	15208	15242	25731	25731					0.045154363318033575
GVTVGVTTILA	11	Unmodified	_GVTVGVTTILA_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8009033203125	2	515.810782	1029.60701	0.96408	0.00049728	-1.8067	-0.0009319	-0.84259	-0.00043462	515.8096910004618	37.025	0.47146	37.025	36.724	37.195	0					20	11	2	0	0	0	0.024776	1	2965	2965		49.442	20.271	1	642850			22120	10026	15209	15243	25732	25732					0.09339182791586609
GVTVKYKS	8	Unmodified	_GVTVKYKS_					0	0	0			REV__ENSG00000116819|ENST00000373235|TFAP2E	REV__ENSG00000116819|ENST00000373235|TFAP2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7879333496094	2	441.258185	880.501818	-0.26611	-0.00011742	2.9941	0.0013212	2.728	0.0012037	441.25909500374206	43.115	0.40155	43.115	42.859	43.261	0					21	10	3	0	0	0	0.027866	1	4003	4003		45.952	31.288	1	84943	+		22121	22307	15210	15244	25733	25733					0.05678686385806486
GVTVRNPQVDL	11	Unmodified	_GVTVRNPQVDL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.3322143554688	2	599.332944	1196.65134	-0.40705	-0.00024396	-1.3804	-0.00082731	-1.7874	-0.0010713	599.3319248927479	58.458	0.5349	58.274	58.054	58.589	-0.18385					34	12	3	0	0	0	0.76305	1	6422	6422		59.931	15.554	1	2071900	+		22122	28136	15211	15245	25734	25734					0.06087586937769629
GVTVRNPQVDL	11	Unmodified	_GVTVRNPQVDL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	599.332944	1196.65134	0.40556	0.00024307	-2.1602	-0.0012947	-1.7546	-0.0010516	599.3315428662127	58.502	0.6207	58.26	58.001	58.622	-0.24165	0.038701	-0.00051915	NaN	59.931	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2066500	+		22123	28136	15211	15245							0.06087586937769629
GVVAISGKV	9	Unmodified	_GVVAISGKV_					0	0	0		nc|ENSG00000160179|P45844-8|ABCG1	nc|ENSG00000160179|P45844-8|ABCG1	nc|ENSG00000160179|P45844-8|ABCG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2315673828125	2	415.260728	828.506903	-0.23754	-9.8642E-05	0.3521	0.00014621	0.11456	4.7571E-05	415.26078831676455	20.715	0.79257	20.492	20.266	21.058	-0.22344					45	15	5	0	0	0	0.024374	1	615	615		32.812	3.6629	1	1241300			22124	18422	15212	15246	25735	25735					0.08578990248417995
GVVAVRLI	8	Unmodified	_GVVAVRLI_					0	0	0		nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.25872802734375	2	413.779088	825.543623	0.10583	4.3792E-05	1.9326	0.00079967	2.0384	0.00084347	413.779351359295	38.787	0.1935	38.562	38.443	38.636	-0.2257					6	4	2	0	0	0	0.027866	1	3213	3213		21.702	0	1	44568			22125	1522	15213	15247	25736	25736					0.12387286864998259
GVVEGLPII	9	Unmodified	_GVVEGLPII_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7747497558594	2	448.776211	895.537869	0.61983	0.00027816	-3.5838	-0.0016083	-2.9639	-0.0013301	448.77445426603504	20.81	0.63937	20.879	20.514	21.153	0.068901					26	12	3	0	0	0	0.90698	1	545	545		31.955	0	1	127440	+		22126	23867	15214	15248	25737	25737					0.08592143562668753
GVVEGLPII	9	Unmodified	_GVVEGLPII_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.776211	895.537869	-0.82748	-0.00037135	-1.8433	-0.00082725	-2.6708	-0.0011986	448.77519546047245	20.842	0.6335	20.842	20.562	21.195	0	-0.025882	0.00074952	NaN	31.955	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93770	+		22127	23867	15214	15248							0.08592143562668753
GVVEGLPII	9	Unmodified	_GVVEGLPII_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	448.776211	895.537869	-0.22818	-0.0001024	-2.5265	-0.0011338	-2.7547	-0.0012363	448.7749524100184	20.973	0.53514	20.883	20.72	21.255	-0.090094	0.014925	0.00013632	NaN	31.955	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113090	+		22128	23867	15214	15248							0.08592143562668753
GVVEGLPII	9	Unmodified	_GVVEGLPII_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	448.776211	895.537869	0.61983	0.00027816	-3.5838	-0.0016083	-2.9639	-0.0013301	448.77445426603504	20.81	0.63937	20.879	20.514	21.153	0.068901	0.010958	-0.00081259	NaN	31.955	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127440	+		22129	23867	15214	15248							0.08592143562668753
GVVEHRHRLGL	11	Unmodified	_GVVEHRHRLGL_					0	0	0			REV__PCYOX1L|p.R104H|1|0.22|ENSG00000145882|chr5:149364051-149364051|G/A|missense_variant	REV__PCYOX1L|p.R104H|1|0.22|ENSG00000145882|chr5:149364051-149364051|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.910400390625	3	424.914305	1271.72109	-0.60793	-0.00025832	-3.6504	-0.0015511	-4.2583	-0.0018094	424.9127001724938	39.308	1.0729	39.331	38.768	39.84	0.023727					98	29	5	0	0	0	0.96309	1	3275	3275		45.022	0.38276	1	12649000	+		22130	37363	15215	15249	25738	25738					0.09609510397035592
GVVEHVAR	8	Unmodified	_GVVEHVAR_					0	0	0		ENST00000553027.1_1_12:49318530-49318749:-|nuORF	ENST00000553027.1_1_12:49318530-49318749:-|nuORF	ENST00000553027.1_1_12:49318530-49318749:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.5483093261719	2	433.745776	865.477	0.59921	0.00025991	0.47085	0.00020423	1.0701	0.00046413	433.7456537335177	24.599	0.72686	24.677	24.364	25.091	0.078346					22	15	2	0	0	0	0.027866	1	1044	1044		31.955	3.7006	1	89417			22131	16630	15216	15250	25739	25739					0.0388805130307901
GVVGIKIKQ	9	Unmodified	_GVVGIKIKQ_					0	0	0			REV__nc|ENSG00000140650|O15305-2|PMM2	REV__nc|ENSG00000140650|O15305-2|PMM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.309326171875	2	471.310752	940.606951	0.8435	0.00039755	-3.8516	-0.0018153	-3.0081	-0.0014178	471.30888240120373	17.351	1.1935	17.208	17.048	18.241	-0.14278					46	24	4	0	0	0	0.83071	1	149	149		37.159	0.13063	1	1134700	+		22132	24035	15217	15251	25740	25740					0.13427227582235446
GVVILKGDEL	10	Unmodified	_GVVILKGDEL_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8129272460938	2	521.810782	1041.60701	-0.33508	-0.00017485	4.428	0.0023106	4.0929	0.0021357	521.8130217566711	41.917	1.8968	41.917	41.579	43.475	0					149	53	4	0	0	0	1.0508	1	3760	3760		39.253	0.44669	1	7471500	+		22133	24334	15218	15252	25741	25741					0.0878718279154782
GVVKKKLC	8	Unmodified	_GVVKKKLC_					0	0	0			REV__AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|21|2|anti-sense	REV__AluSp_dup1142|chr1:32231212-32231509:+|1.303744601239934|0.2089834518128584|2.64|522.0|21|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.89794921875	2	437.780773	873.546994	-0.27221	-0.00011917	-3.1582	-0.0013826	-3.4304	-0.0015018	437.7791547378862	33.524	0.44025	33.293	33.075	33.516	-0.23107					14	10	2	0	0	0	0.027866	1	2414	2414		20.482	0	1	84990	+		22134	19120	15219	15253	25742	25742					0.1051621364734956
GVVKPRAV	8	Unmodified	_GVVKPRAV_					0	0	0		ENST00000548981.5_1_12:51470402-51477118:-|nuORF;ENST00000548206.1_1_12:51467813-51477118:-|nuORF	ENST00000548981.5_1_12:51470402-51477118:-|nuORF	ENST00000548981.5_1_12:51470402-51477118:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2692565917969	2	413.268887	824.523222	-1.0947	-0.00045239	0.87983	0.0003636	-0.21484	-8.8786E-05	413.26918793739094	28.47	1.0061	28.224	27.961	28.967	-0.24524					64	23	4	0	0	0	0.75307	1	1680	1680		62.978	0	1	6104500			22135	16550	15220	15254	25743	25743					0.10394116205179671
GVVLRLGLI	9	Unmodified	_GVVLRLGLI_					0	0	0			REV__ENST00000424459.7_2_5:56469852-56471319:+|nuORF	REV__ENST00000424459.7_2_5:56469852-56471319:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3091735839844	2	470.32112	938.627687	-0.027303	-1.2841E-05	-1.0002	-0.00047041	-1.0275	-0.00048325	470.3211470604315	17.321	0.25223	17.114	16.963	17.216	-0.20669					13	4	4	0	0	0	0.024535	1	165	165		25.45	12.491	1	43009	+		22136	32233	15221	15255	25744	25744					0.15591817961876586
GVVNGRLNR	9	Unmodified	_GVVNGRLNR_					0	0	0			REV__ENST00000442081.6_2_6:12015861-12020524:+|nuORF	REV__ENST00000442081.6_2_6:12015861-12020524:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.7888488769531	2	492.788507	983.562461	0.71677	0.00035322	-0.87174	-0.00042958	-0.15497	-7.6366E-05	492.78797359409566	20.666	0.58994	20.734	20.514	21.103	0.068901					33	11	4	0	0	0	0.90698	1	516	516		31.955	0	1	628100	+		22137	32554	15222	15256	25745	25745					0.07002216488729118
GVVNQKLW	8	Unmodified	_GVVNQKLW_					0	0	0		ENST00000322723.8_1_2:232321811-232322410:-|nuORF	ENST00000322723.8_1_2:232321811-232322410:-|nuORF	ENST00000322723.8_1_2:232321811-232322410:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.3291320800781	2	472.271627	942.528701	2.5794	0.0012182	1.1051	0.00052192	3.6845	0.0017401	472.27192507326083	18.638	0.54731	18.396	18.175	18.722	-0.24256					20	10	3	0	0	0	0.027866	1	322	322		28.254	0	1	86533			22138	12228	15223	15257	25746	25746					0.055137949969775946
GVVPDHPVLL	10	Unmodified	_GVVPDHPVLL_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A;KIF21A|p.S1601C|1|0.33|ENSG00000139116|chr12:39301610-39301610|T/A|missense_variant;ENST00000547733.1_1_12:39688228-39705384:-|nuORF	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3036499023438	2	523.305667	1044.59678	-1.4035	-0.00073446	-2.3027	-0.001205	-3.7062	-0.0019395	523.3042416175249	90.079	1.2388	90.079	89.731	90.97	0					76	29	4	0	0	0	1.0142	1	11382	11382		44.117	3.3386	1	1135000			22139	5297	15224	15258	25747	25747					0.0762661985700106
GVVPIGALD	9	Unmodified	_GVVPIGALD_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.7438049316406	2	420.744911	839.475269	-0.36885	-0.00015519	-2.8607	-0.0012036	-3.2295	-0.0013588	420.74375652988215	27.567	1.6254	27.554	27.241	28.867	-0.012983					105	40	4	0	0	0	0.88411	1	1538	1538		33.516	0	1	8988000	+		22140	24494	15225	15259	25748	25748					0.04910997494471303
GVVREGIPVL	10	Unmodified	_GVVREGIPVL_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|238|2|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|198|1|anti-sense;chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|35;chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|53;chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|26;chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|49;chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|48;chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|50;chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|53;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|52;chr1:245764149-245816795|230|20.85|0.05|8.85|-|0|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|20;L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|137|3|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|238|2|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|238|2|anti-sense	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8189086914062	2	519.818941	1037.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.414	1	71.424	70.924	71.924	0.010735								0	0	0	0.27465	1	8576	8576		76.774	2.5191	1				22141	282	15226	15260	25749	25749					0.10602308748320866
GVVRHYWLW	9	Unmodified	_GVVRHYWLW_					0	0	0			REV__ENSG00000131069|ENST00000360596|ACSS2	REV__ENSG00000131069|ENST00000360596|ACSS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.923095703125	3	405.885576	1214.6349	0.37342	0.00015157	-2.6082	-0.0010586	-2.2348	-0.00090706	405.8851422528054	26.774	0.86042	26.606	26.153	27.013	-0.16816					41	20	3	0	0	0	0.024523	1	1371	1371		37.159	24.347	1	126100	+		22142	23187	15227	15261	25750	25750					0.036165505623102945
GVVRRNAREVS	11	Unmodified	_GVVRRNAREVS_					0	0	0			REV__ALDH1A2|p.K345N|1|0.17|ENSG00000128918|chr15:57963936-57963936|C/G|missense_variant	REV__ALDH1A2|p.K345N|1|0.17|ENSG00000128918|chr15:57963936-57963936|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.9058837890625	3	414.905698	1241.69527	-0.12171	-5.0498E-05	-0.015171	-6.2947E-06	-0.13688	-5.6793E-05	414.905759165599	21.171	1.9169	21.171	20.562	22.479	0					106	39	5	0	0	0	1.0215	1	654	654		32.034	0.39986	1	3796700	+		22143	19101	15228	15262	25751	25751					0.08408616154747506
GVVSAKNDI	9	Unmodified	_GVVSAKNDI_					0	0	0		ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76678466796875	2	451.750724	901.486896	0.1528	6.9026E-05	-0.086087	-3.889E-05	0.066711	3.0137E-05	451.7508510400546	35.102	0.74719	34.886	34.589	35.336	-0.21556					51	18	4	0	0	0	0.02435	1	2662	2662		26.693	0	1	252840			22144	6102	15229	15263	25752	25752					0.03221194517800541
GVVSPGMH	8	Oxidation (M)	_GVVSPGM(Oxidation (M))H_		GVVSPGM(1)H		GVVSPGM(66)H	0	0	1			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.1964416503906	2	400.191988	798.369423	1.4544	0.00058205	3.8541	0.0015424	5.3085	0.0021244	400.19317366168235	80.238	1.1138	80.031	79.714	80.828	-0.20633					52	26	3	0	0	0	0.71717	2	9645	9621;9645		65.897	11.133	1	2185200	+		22145	19459	15230	15264	25753;25754	25754		602			-0.03782661622631167
GVVSPGMH	8	Oxidation (M)	_GVVSPGM(Oxidation (M))H_		GVVSPGM(1)H		GVVSPGM(57)H	0	0	1			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.1972961425781	2	400.191988	798.369423	1.4544	0.00058205	3.8541	0.0015424	5.3085	0.0021244	400.19317366168235	80.238	1.1138	80.031	79.714	80.828	-0.20633					52	26	3	0	0	0	0.027866	1	9598	9598		57.453	20.424	1	2185200	+		22146	19459	15230	15264	25755	25755		602			-0.03782661622631167
GVVVEKLEV	9	Unmodified	_GVVVEKLEV_					0	0	0			REV__ENST00000378277.8_1_16:89756998-89758964:+|nuORF	REV__ENST00000378277.8_1_16:89756998-89758964:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.29193115234375	2	486.292225	970.569897	0.86071	0.00041855	-1.6345	-0.00079486	-0.77382	-0.0003763	486.29141327896167	59.829	1.5878	59.829	59.257	60.845	0					113	42	5	0	0	0	0.42604	1	6897	6897		64.207	7.4862	1	28486000	+		22147	27756	15231	15265	25756	25756					0.08343511245811897
GVVVSNRRL	9	Unmodified	_GVVVSNRRL_					0	0	0			REV__ENST00000325327.3_1_19:2430189-2430624:-|nuORF	REV__ENST00000325327.3_1_19:2430189-2430624:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3057556152344	2	500.306532	998.598512	-0.72523	-0.00036284	-0.12813	-6.4102E-05	-0.85335	-0.00042694	500.3064276370605	32.939	0.83373	32.946	32.738	33.572	0.0066261					42	22	3	0	0	0	0.6504	1	2317	2317		49.442	0	1	3294800	+		22148	30388	15232	15266	25757	25757					0.09915673665602753
GVVVTLVNLE	10	Unmodified	_GVVVTLVNLE_					0	0	0		ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8128662109375	2	521.810782	1041.60701	-0.36354	-0.0001897	4.4443	0.0023191	4.0808	0.0021294	521.8130669238732	42.143	1.7596	42.011	41.678	43.437	-0.1322					142	49	4	0	0	0	1.0909	1	3790	3790		33.922	3.418	1	7330800			22149	6786	15233	15267	25758	25758					0.0878718279154782
GVVWARVQ	8	Unmodified	_GVVWARVQ_					0	0	0		ENST00000352732.9_1_15:89740264-89740393:+|nuORF	ENST00000352732.9_1_15:89740264-89740393:+|nuORF	ENST00000352732.9_1_15:89740264-89740393:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.74578857421875	2	457.763969	913.513385	0.0090359	4.1363E-06	-0.32519	-0.00014886	-0.31616	-0.00014473	457.7635165687123	26.168	0.44638	26.168	26.043	26.489	0					14	10	2	0	0	0	0.027866	1	1349	1349		13.775	0	1	49678			22150	12608	15234	15268	25759	25759					0.05316928199795257
GVWIPHAAI	9	Unmodified	_GVWIPHAAI_					0	0	0			REV__ENST00000461101.1_1_4:75026431-75026560:+|nuORF	REV__ENST00000461101.1_1_4:75026431-75026560:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.78814697265625	2	482.27417	962.533787	-1.0854	-0.00052344	0.090405	4.36E-05	-0.99495	-0.00047984	482.27404833949964	29.389	0.91352	29.389	29.223	30.137	0					34	22	2	0	0	0	0.024475	1	1869	1869		29.842	12.477	1	102200	+		22151	32868	15235	15269	25760	25760					0.051020988596064853
GVWIPHAAI	9	Unmodified	_GVWIPHAAI_					0	0	0			REV__ENST00000461101.1_1_4:75026431-75026560:+|nuORF	REV__ENST00000461101.1_1_4:75026431-75026560:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.27417	962.533787	-0.51968	-0.00025063	-0.53607	-0.00025853	-1.0557	-0.00050916	482.2734955266967	29.596	0.84072	29.599	29.276	30.117	0.0031357	0.10486	-0.00046233	NaN	29.842	31	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68273	+		22152	32868	15235	15269							0.051020988596064853
GVWIREQY	8	Unmodified	_GVWIREQY_					0	0	0			REV__ENSG00000198547|ENST00000608990|C20orf203	REV__ENSG00000198547|ENST00000608990|C20orf203	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.274658203125	2	525.771991	1049.52943	-0.95877	-0.0005041	-2.6094	-0.001372	-3.5682	-0.0018761	525.7700844210527	34.093	1.1087	33.918	33.662	34.771	-0.17557					82	27	4	0	0	0	0.87148	1	2527	2527		53.351	2.016	1	9799400	+		22153	28431	15236	15270	25761	25761					0.006645896460440781
GVWQGVKP	8	Unmodified	_GVWQGVKP_					0	0	0			REV__ENSG00000021762|ENST00000263650|OSBPL5	REV__ENSG00000021762|ENST00000263650|OSBPL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7716979980469	2	435.745245	869.475937	-0.39352	-0.00017147	-3.7019	-0.0016131	-4.0955	-0.0017846	435.7434429467996	25.17	0.53818	25.17	24.786	25.324	0					22	12	3	0	0	0	0.027866	1	1175	1175		8.8223	0	1	81425	+		22154	19997	15237	15271	25762	25762					0.035978369341819416
GVYDFKAI	8	Unmodified	_GVYDFKAI_					0	0	0			REV__ENSG00000196935|ENST00000355086|SRGAP1;REV__MAPKAPK2-SRGAP2|1|fusion	REV__MAPKAPK2-SRGAP2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7663269042969	2	456.744911	911.475269	-0.33749	-0.00015415	-3.9395	-0.0017993	-4.2769	-0.0019535	456.74254148053615	23.091	0.39422	23.167	22.84	23.234	0.076239					12	8	2	0	0	0	0.027866	1	826	826		65.803	18.146	1	159900	+		22155	28241;29138	15238	15272	25763	25763					0.01598997494465948
GVYFSSYG	8	Unmodified	_GVYFSSYG_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.2540283203125	2	440.197793	878.381034	0.41523	0.00018279	-0.78624	-0.0003461	-0.371	-0.00016331	440.1973202471921	37.342	2.707	37.342	35.492	38.199	0					146	74	3	0	0	0	0.027866	1	3147	3147		13.775	0	1	559840			22156	9418	15239	15273	25764	25764					-0.06302141327648769
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.I370N|1|0.22|ENSG00000117569|chr1:96806896-96806896|T/A|missense_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.76129150390625	2	496.761623	991.508694	0.4926	0.0002447	-1.165	-0.00057873	-0.6724	-0.00033402	496.7610217585409	41.599	0.696	41.599	41.258	41.954	0					63	19	4	0	0	0	0.2101	4	3753	3742;3753;3764;3778		87.696	34.76	1	7490800			22157	893;3641	15240	15274	25765;25766;25767;25768	25766					0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.I370N|1|0.22|ENSG00000117569|chr1:96806896-96806896|T/A|missense_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.76153564453125	2	496.761623	991.508694	-0.29898	-0.00014852	-0.27745	-0.00013783	-0.57643	-0.00028635	496.76146005278895	41.79	0.70188	41.657	41.251	41.953	-0.13219					59	19	4	0	0	0	0.12914	3	3785	3748;3764;3785		104.06	35.27	1	6764500			22158	893;3641	15240	15274	25769;25770;25771	25771					0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.I370N|1|0.22|ENSG00000117569|chr1:96806896-96806896|T/A|missense_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.7614440917969	2	496.761623	991.508694	0.074977	3.7246E-05	-0.65269	-0.00032423	-0.57771	-0.00028698	496.7612867933977	41.777	1.1346	41.8	41.429	42.563	0.023006					75	32	4	0	0	0	0.2101	2	3720	3720;3750		87.696	10.922	1	7442100			22159	893;3641	15240	15274	25772;25773	25772					0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.I370N|1|0.22|ENSG00000117569|chr1:96806896-96806896|T/A|missense_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.761623	991.508694	-0.39057	-0.00019402	1.388	0.0006895	0.99743	0.00049549	496.7623956107826	42.01	0.61501	41.779	41.391	42.006	-0.23186	0.049938	0.0020028	NaN	104.06	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345810			22160	893;3641	15240	15274							0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;PTBP2|p.I370N|1|0.22|ENSG00000117569|chr1:96806896-96806896|T/A|missense_variant;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.761623	991.508694	-0.28143	-0.00013981	1.4741	0.00073227	1.1926	0.00059246	496.76214451025606	42.039	0.6515	41.808	41.313	41.965	-0.2303	0.07977	0.0020883	NaN	104.06	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357790			22161	893;3641	15240	15274							0.012599992663922421
GVYGGSVHEA	10	Unmodified	_GVYGGSVHEA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2301940917969	2	488.230156	974.445759	-0.66902	-0.00032664	0.30998	0.00015134	-0.35904	-0.00017529	488.2303260762244	31.432	1.2968	31.432	31.003	32.3	0					77	31	4	0	0	0	0.0043491	4	2094	2083;2094;2106;2120		181.81	85.615	1	5843600			22162	4701	15241	15275	25774;25775;25776;25777	25775					-0.04248566521664543
GVYGGSVHEA	10	Unmodified	_GVYGGSVHEA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2300720214844	2	488.230156	974.445759	-0.31785	-0.00015519	-0.095416	-4.6585E-05	-0.41327	-0.00020177	488.2301347246528	31.308	1.1517	31.32	30.871	32.023	0.011797					80	27	5	0	0	0	0.0043491	3	2066	2055;2066;2078		181.81	96.645	1	5962200			22163	4701	15241	15275	25778;25779;25780	25779					-0.04248566521664543
GVYGGSVHEA	10	Unmodified	_GVYGGSVHEA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.23028564453125	2	488.230156	974.445759	-0.61399	-0.00029977	0.11372	5.5523E-05	-0.50026	-0.00024424	488.2302686611843	30.992	1.224	31.061	30.621	31.845	0.068962					85	29	4	0	0	0	0.015106	3	1973	1973;1984;1997		166.78	81.622	1	5761300			22164	4701	15241	15275	25781;25782;25783	25781					-0.04248566521664543
GVYGGSVHEA	10	Unmodified	_GVYGGSVHEA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2303161621094	2	488.230156	974.445759	-0.41801	-0.00020408	0.5076	0.00024782	0.089591	4.3741E-05	488.2302826224001	31.48	0.90546	31.238	30.915	31.82	-0.24109					58	22	4	0	0	0	0.033445	3	2100	2089;2100;2112		152.47	71.332	1	3456000			22165	4701	15241	15275	25784;25785;25786	25785					-0.04248566521664543
GVYGGSVHEA	10	Unmodified	_GVYGGSVHEA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.2304382324219	2	488.230156	974.445759	-0.21909	-0.00010696	0.23033	0.00011245	0.011244	5.4895E-06	488.2301708662612	31.402	1.5464	31.217	30.49	32.036	-0.18503					71	37	4	0	0	0	0.087538	3	2082	2071;2082;2093		138.83	62.189	1	3221000			22166	4701	15241	15275	25787;25788;25789	25788					-0.04248566521664543
GVYGGSVHEA	10	Unmodified	_GVYGGSVHEA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.2302551269531	2	488.230156	974.445759	-0.12334	-6.0217E-05	0.17732	8.6572E-05	0.053983	2.6356E-05	488.23008926828487	31.405	1.1974	31.253	30.887	32.084	-0.15231					67	29	4	0	0	0	0.087538	3	2069	2059;2069;2082		138.83	73.36	1	3177600			22167	4701	15241	15275	25790;25791;25792	25791					-0.04248566521664543
GVYRAAGK	8	Unmodified	_GVYRAAGK_					0	0	0		nc|ENSG00000166822|Q8WVE7-2|TMEM170A;ENSG00000166822|ENST00000561878|TMEM170A	nc|ENSG00000166822|Q8WVE7-2|TMEM170A	nc|ENSG00000166822|Q8WVE7-2|TMEM170A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.755615234375	2	411.235045	820.455536	-0.84138	-0.00034601	1.5415	0.00063392	0.70012	0.00028791	411.2355837189049	37.42	0.5829	37.2	36.846	37.429	-0.2195					21	14	2	0	0	0	0.027866	1	3035	3035		20.482	7.5226	1	146060			22168	7609	15242	15276	25793	25793					0.038126662743820816
GVYRAAGK	8	Unmodified	_GVYRAAGK_					0	0	0		nc|ENSG00000166822|Q8WVE7-2|TMEM170A;ENSG00000166822|ENST00000561878|TMEM170A	nc|ENSG00000166822|Q8WVE7-2|TMEM170A	nc|ENSG00000166822|Q8WVE7-2|TMEM170A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.7555236816406	2	411.235045	820.455536	-0.10759	-4.4246E-05	0.9294	0.0003822	0.8218	0.00033795	411.2352666468619	37.357	0.74865	37.148	36.685	37.434	-0.2092					27	18	2	0	0	0	0.027866	1	3022	3022		20.482	16.797	1	236890			22169	7609	15242	15276	25794	25794					0.038126662743820816
GWANEIKI	8	Unmodified	_GWANEIKI_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2870178222656	2	465.75581	929.497067	-0.21309	-9.9248E-05	2.2706	0.0010575	2.0575	0.00095828	465.7568748519686	75.642	0.39651	75.369	75.186	75.582	-0.27266					16	9	3	0	0	0	0.027866	1	8929	8929		56.721	26.217	1	314850	+		22170	26284	15243	15277	25795	25795					0.029498022430288984
GWAQIFTVEL	10	Unmodified	_GWAQIFTVEL_					0	0	0			REV__ENSG00000180644|ENST00000441259|PRF1	REV__ENSG00000180644|ENST00000441259|PRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3049926757812	2	582.308406	1162.60226	-1.7692	-0.0010302	-2.3538	-0.0013706	-4.123	-0.0024009	582.3068905797421	62.87	0.73769	62.631	62.394	63.132	-0.23926					37	18	3	0	0	0	0.45367	1	7287	7287		93.195	2.4188	1	2871800	+		22171	27353	15244	15278	25796	25796					0.02746298648821721
GWAQIFTVEL	10	Unmodified	_GWAQIFTVEL_					0	0	0			REV__ENSG00000180644|ENST00000441259|PRF1	REV__ENSG00000180644|ENST00000441259|PRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.30615234375	2	582.308406	1162.60226	0.10768	6.2705E-05	-4.2312	-0.0024639	-4.1236	-0.0024012	582.3059266810783	62.592	0.73375	62.655	62.401	63.135	0.062767					45	17	3	0	0	0	0.42812	1	7221	7221		95.815	19.041	1	3018200	+		22172	27353	15244	15278	25797	25797					0.02746298648821721
GWATTISAL	9	Unmodified	_GWATTISAL_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.22216796875	2	460.247818	918.481082	0.066827	3.0757E-05	3.291	0.0015147	3.3578	0.0015454	460.249125240653	42.606	0.63141	42.467	42.142	42.773	-0.13929					30	17	2	0	0	0	0.024412	1	3903	3903		24.203	0	1	766320	+		22173	23009	15245	15279	25798	25798					0.01858096006139931
GWCAVFALL	9	Unmodified	_GWCAVFALL_					0	0	0			REV__ENSG00000180739|ENST00000333430|S1PR5	REV__ENSG00000180739|ENST00000333430|S1PR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2605895996094	2	490.257131	978.499709	-0.31257	-0.00015324	2.0129	0.00098682	1.7003	0.00083358	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	0.93795	1	13065	13065		29.842	0.69198	1	4889800	+		22174	27358	15246	15280	25799	25799					0.009599343763397883
GWCRWLQSNEV	11	Unmodified	_GWCRWLQSNEV_					0	0	0			REV__ENST00000373095.5_1_9:130703347-130703578:-|nuORF	REV__ENST00000373095.5_1_9:130703347-130703578:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.27374267578125	3	459.883795	1376.62955	0.024133	1.1099E-05	1.8185	0.00083628	1.8426	0.00084738	459.88464275534983	34.422	0.57616	34.198	33.844	34.42	-0.22412					27	14	2	0	0	0	0.02473	1	2526	2526		21.032	0	1	123220	+		22175	31235	15247	15281	25800	25800					-0.043695410824739156
GWDFRLNF	8	Unmodified	_GWDFRLNF_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.7744750976562	2	527.758884	1053.50321	-1.1811	-0.00062332	3.0635	0.0016168	1.8824	0.00099345	527.7599649701431	80.736	1.3042	80.584	80.259	81.563	-0.15169					74	31	3	0	0	0	0.027866	1	9973	9973		26.796	0	1	1169400			22176	12799	15248	15282	25801	25801					-0.02139679525430438
GWEFLLKEL	9	Unmodified	_GWEFLLKEL_					0	0	0		ENST00000238831.8_1_2:32530721-32530832:+|nuORF	ENST00000238831.8_1_2:32530721-32530832:+|nuORF	ENST00000238831.8_1_2:32530721-32530832:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8114013671875	2	567.813325	1133.6121	-0.5721	-0.00032485	-2.8793	-0.0016349	-3.4514	-0.0019597	567.8115204773222	69.52	1.6187	69.253	68.502	70.121	-0.26724					77	34	4	0	0	0	0.32811	1	8081	8081		71.877	2.2498	1	2508700			22177	11270	15249	15283	25802	25802					0.05063486654194094
GWEFLLKEL	9	Unmodified	_GWEFLLKEL_					0	0	0		ENST00000238831.8_1_2:32530721-32530832:+|nuORF	ENST00000238831.8_1_2:32530721-32530832:+|nuORF	ENST00000238831.8_1_2:32530721-32530832:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.811279296875	2	567.813325	1133.6121	0.23907	0.00013575	-3.6713	-0.0020846	-3.4322	-0.0019489	567.8110441978595	69.429	1.6416	69.179	68.462	70.103	-0.25063					77	37	4	0	0	0	0.32811	1	8083	8083		71.877	6.0743	1	3027300			22178	11270	15249	15283	25803	25803					0.05063486654194094
GWFVSMVILP	10	Unmodified	_GWFVSMVILP_					0	0	0			REV__ENSG00000113732|ENST00000519374|ATP6V0E1	REV__ENSG00000113732|ENST00000519374|ATP6V0E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.7951049804688	2	574.81227	1147.60999	0.38605	0.00022191	1.9812	0.0011388	2.3672	0.0013607	575.3140979800803	63.729	0.64429	63.729	63.558	64.203	0					24	17	2	0	0	0	0.03519	1	7448	7448		29.15	5.6269	1	353680	+		22179	22087	15250	15284	25804	25804					0.04208734644748802
GWGLLLYY	8	Unmodified	_GWGLLLYY_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR	REV__nc|ENSG00000010310|P48546-2|GIPR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.728515625	2	492.763104	983.511654	0.29901	0.00014734	-1.8003	-0.00088714	-1.5013	-0.0007398	492.7620864106721	63.304	1.3622	63.046	62.75	64.112	-0.25824					46	34	2	0	0	0	0.027866	1	7176	7176		33.493	4.3434	1	507440	+		22180	19903	15251	15285	25805	25805					0.019238743911841993
GWGSQNMTV	9	Unmodified	_GWGSQNMTV_					0	0	0			REV__ENSG00000105509|ENST00000540069|HAS1	REV__ENSG00000105509|ENST00000540069|HAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2532043457031	2	490.218734	978.422915	-0.028222	-1.3835E-05	-2.0534	-0.0010066	-2.0816	-0.0010205	490.21681593110156	42.829	0.2172	42.829	42.715	42.932	0					8	5	3	0	0	0	0.024323	1	3973	3973		44.117	18.667	1	45675	+		22181	21533	15252	15286	25806	25806					-0.06715908910791768
GWGVSVVVGVA	11	Unmodified	_GWGVSVVVGVA_					0	0	0		ENSG00000197894|ENST00000296412|ADH5;ENST00000512621.5_1_4:99993722-100006301:-|nuORF	ENSG00000197894|ENST00000296412|ADH5	ENSG00000197894|ENST00000296412|ADH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2797241210938	2	515.290017	1028.56548	-0.75902	-0.00039112	2.2964	0.0011833	1.5374	0.00079221	515.2903183278077	82.241	0.65172	82.101	81.87	82.522	-0.14014					27	14	3	0	0	0	0.024729	1	9936	9936		21.96	5.4867	1	110110			22182	10064	15253	15287	25807	25807					0.05234046822920391
GWGVYRSPS	9	Unmodified	_GWGVYRSPS_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.76708984375	2	504.748516	1007.48248	-0.73371	-0.00037034	2.1003	0.0010601	1.3666	0.00068979	504.7494476124437	66.188	0.55762	65.975	65.712	66.269	-0.21327					29	13	3	0	0	0	0.024436	1	7558	7558		38.806	20.482	1	833870			22183	3030	15254	15288	25808	25808					-0.020962699050983247
GWGVYRSPS	9	Unmodified	_GWGVYRSPS_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.748516	1007.48248	0.38521	0.00019443	3.0413	0.0015351	3.4265	0.0017295	504.7498117740379	66.046	0.34645	66.046	65.837	66.184	0	0.035621	0.00028106	NaN	23.042	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379580			22184	3030	15254	15288							-0.020962699050983247
GWGVYRSPS	9	Unmodified	_GWGVYRSPS_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.748516	1007.48248	-0.10052	-5.074E-05	4.0701	0.0020544	3.9696	0.0020037	504.7503004017192	66.072	0.30684	66.102	65.89	66.197	0.030106	0.092123	0.0013197	NaN	23.042	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377740			22185	3030	15254	15288							-0.020962699050983247
GWHWQDSWTV	10	Unmodified	_GWHWQDSWTV_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2694091796875	3	434.528117	1300.56252	-0.15529	-6.7478E-05	2.3188	0.0010076	2.1635	0.0009401	434.52895490147466	23.527	0.33415	23.527	23.36	23.694	0					16	7	3	0	0	0	0.03519	1	923	923		31.634	21.047	1	36033			22186	10844	15255	15289	25809	25809					-0.07573828301929098
GWICGQVLKNF	11	Unmodified	_GWICGQVLKNF_					0	0	0		ENSG00000145757|ENST00000274432|SPATA9;nc|ENSG00000145757|Q9BWV2-2|SPATA9;nc|ENSG00000145757|Q9BWV2-3|SPATA9	ENSG00000145757|ENST00000274432|SPATA9	ENSG00000145757|ENST00000274432|SPATA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5133972167969	3	422.221748	1263.64341	-0.37197	-0.00015705	2.4836	0.0010486	2.1117	0.00089159	422.55823489459544	31.91	0.35981	31.922	31.663	32.023	0.011797					13	8	2	0	0	0	0.024748	1	2137	2137		24.232	1.6522	1	91819			22187	5837	15256	15290	25810	25810					0.02213736416615575
GWIFLFYL	8	Unmodified	_GWIFLFYL_					0	0	0			REV__ENSG00000078725|ENST00000265922|BRINP1	REV__ENSG00000078725|ENST00000265922|BRINP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7633666992188	2	529.789121	1057.56369	-0.21846	-0.00011574	-0.55319	-0.00029308	-0.77165	-0.00040881	529.7897465978992	81.985	0.55333	81.792	81.505	82.058	-0.19333					16	12	2	0	0	0	0.027866	1	9868	9868		33.493	0.74245	1	44415	+		22188	20618	15257	15291	25811	25811					0.03721037804939442
GWIVQKIF	8	Unmodified	_GWIVQKIF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.3233947753906	2	495.792195	989.569838	0.21603	0.00010711	4.4351	0.0021989	4.6512	0.002306	495.79526166675004	64.461	0.26815	64.506	64.335	64.603	0.045502					8	6	2	0	0	0	0.027866	1	7487	7487		29.842	0	1	98438			22189	5334	15258	15292	25812	25812					0.0746355603646407
GWKGRCKVPHG	11	Unmodified	_GWKGRCKVPHG_					0	0	0		ENST00000512138.1_1_5:39203048-39250878:-|nuORF;ENST00000351578.10_1_5:39203048-39219557:-|nuORF;ENST00000515010.5_1_5:39203051-39203108:-|nuORF	ENST00000512138.1_1_5:39203048-39250878:-|nuORF	ENST00000512138.1_1_5:39203048-39250878:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	613.7991943359375	2	612.824566	1223.63458	-1.0907	-0.00066841	-4.0238	-0.0024659	-5.1145	-0.0031343	612.8220376775902	71.217	0.90045	70.945	70.614	71.515	-0.27185					44	20	3	0	0	0	0.024768	1	8280	8280		47.657	8.8512	1	778940			22190	15853	15259	15293	25813	25813					0.031708075708138495
GWLASHTLPV	10	Unmodified	_GWLASHTLPV_					0	0	0		ENSG00000204671|ENST00000377035|IL31	ENSG00000204671|ENST00000377035|IL31	ENSG00000204671|ENST00000377035|IL31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8319091796875	2	540.795466	1079.57638	-1.6348	-0.00088407	-2.3857	-0.0012902	-4.0204	-0.0021742	540.7931129364599	75.318	0.33073	75.318	75.116	75.447	0					19	8	3	0	0	0	0.03519	1	9220	9220		53.351	26.659	1	260880			22191	10366	15260	15294	25814	25814					0.03977449197191163
GWLFVLLLL	9	Unmodified	_GWLFVLLLL_					0	0	0		ENSG00000188340|ENST00000641131|OR6N2	ENSG00000188340|ENST00000641131|OR6N2	ENSG00000188340|ENST00000641131|OR6N2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.80859375	2	537.341521	1072.66849	-0.97721	-0.0005251	-3.3143	-0.0017809	-4.2915	-0.002306	537.3397555515472	77.451	0.51016	77.289	77.059	77.569	-0.16196					16	11	2	0	0	0	0.024475	1	9192	9192		39.021	8.5179	1	256360			22192	9711	15261	15295	25815	25815					0.13506159281519103
GWLIEKLLL	9	Unmodified	_GWLIEKLLL_					0	0	0			REV__ENST00000526129.5_1_1:76199287-76200536:+|nuORF	REV__ENST00000526129.5_1_1:76199287-76200536:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8197631835938	2	542.841885	1083.66922	-1.1056	-0.00060014	-4.0276	-0.0021863	-5.1331	-0.0027865	542.8394574250196	47.958	0.82388	47.805	47.574	48.398	-0.15301					39	24	2	0	0	0	0.023635	1	4820	4820		56.721	18.91	1	909570	+		22193	34432	15262	15296	25816	25816					0.13072953930554831
GWLLRRLL	8	Unmodified	_GWLLRRLL_					0	0	0			REV__KRBA1|p.A1029Gfs*98|1|0.6|ENSG00000133619|chr7:149734033-149734034|-/G|frameshift_variant	REV__KRBA1|p.A1029Gfs*98|1|0.6|ENSG00000133619|chr7:149734033-149734034|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.298095703125	2	513.832186	1025.64982	-0.20358	-0.00010461	-1.4375	-0.00073866	-1.6411	-0.00084326	513.8312500594802	52.598	0.53104	52.69	52.445	52.976	0.091938					21	13	2	0	0	0	0.027866	1	5567	5567		46.766	0	1	158160	+		22194	36195	15263	15297	25817	25817					0.13802042430324946
GWLRAGTNP	9	Unmodified	_GWLRAGTNP_					0	0	0			REV__nc|ENSG00000159842|Q12979-3|ABR	REV__nc|ENSG00000159842|Q12979-3|ABR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2922668457031	2	486.256508	970.498464	-0.92896	-0.00045171	-4.0844	-0.0019861	-5.0134	-0.0024378	486.254703631336	81.707	0.20074	81.732	81.578	81.779	0.025711					6	4	2	0	0	0	0.024541	1	10098	10098		17.365	0	1	49653	+		22195	36831	15264	15298	25818	25818					0.012034363317866337
GWLRLLKQDVR	11	Unmodified	_GWLRLLKQDVR_					0	0	0		nc|ENSG00000288550|Q8NAC3-4|IL17RC;ENST00000483582.5_1_3:9958999-9974679:+|nuORF;nc|ENSG00000288550|Q8NAC3-6|IL17RC;nc|ENSG00000288550|Q8NAC3-3|IL17RC;ENSG00000163702|ENST00000403601|IL17RC;nc|ENSG00000288550|Q8NAC3|IL17RC;ENST00000494365.5_1_3:9965750-9975274:+|nuORF;ENST00000466046.5_1_3:9965750-9975274:+|nuORF	nc|ENSG00000288550|Q8NAC3-4|IL17RC	nc|ENSG00000288550|Q8NAC3-4|IL17RC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.9480895996094	3	461.945494	1382.81465	2.0994	0.0009698	2.6677	0.0012324	4.7671	0.0022021	461.9468360604292	19.087	0.59357	18.853	18.682	19.275	-0.23345					28	11	3	0	0	0	1.0878	1	361	361		14.694	0.60766	1	183020			22196	7133	15265	15299	25819	25819					0.13855809779465744
GWLTRLGI	8	Unmodified	_GWLTRLGI_					0	0	0		ENST00000477784.1_1_3:138067796-138068624:+|nuORF	ENST00000477784.1_1_3:138067796-138068624:+|nuORF	ENST00000477784.1_1_3:138067796-138068624:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2394104003906	2	458.27417	914.533787	-0.11402	-5.2255E-05	-3.6813	-0.001687	-3.7953	-0.0017393	458.2731869094395	33.71	0.18443	33.71	33.554	33.739	0					5	4	2	0	0	0	0.027866	1	2431	2431		26.796	4.8362	1	33695			22197	15116	15266	15300	25820	25820					0.07310098859602476
GWLVSQPD	8	Unmodified	_GWLVSQPD_					0	0	0			REV__ENST00000356924.8_1_14:74766299-74766908:-|nuORF	REV__ENST00000356924.8_1_14:74766299-74766908:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.263671875	2	451.224342	900.434132	0.17423	7.8616E-05	4.2769	0.0019299	4.4512	0.0020085	451.22610370227216	61.302	0.63483	61.075	60.821	61.455	-0.22663					26	16	2	0	0	0	0.027866	1	7076	7076		54.765	1.4132	1	126740	+		22198	30806	15267	15301	25821	25821					-0.020067635450004673
GWNILNFII	9	Unmodified	_GWNILNFII_					0	0	0		nc|ENSG00000188782|Q7RTX7-2|CATSPER4;ENSG00000188782|ENST00000456354|CATSPER4	nc|ENSG00000188782|Q7RTX7-2|CATSPER4	nc|ENSG00000188782|Q7RTX7-2|CATSPER4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2650146484375	2	545.30821	1088.60187	-1.3523	-0.00073744	0.13259	7.2305E-05	-1.2197	-0.00066514	545.3084422205945	25.816	0.46081	25.644	25.365	25.825	-0.17151					17	10	2	0	0	0	0.024436	1	1258	1258		38.806	22.089	1	396790			22199	9750	15268	15302	25822	25822					0.06110923719620587
GWNYLNLI	8	Unmodified	_GWNYLNLI_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|15|1|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|15|1|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|15|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2838134765625	2	496.763635	991.512717	-0.16062	-7.9789E-05	-1.306	-0.00064879	-1.4666	-0.00072858	496.7630433509843	63.32	0.82178	63.136	62.788	63.61	-0.18386					30	20	2	0	0	0	0.027866	1	7136	7136		62.978	0	1	308570			22200	17829	15269	15303	25823	25823					0.01662088760087954
GWPFLEVE	8	Unmodified	_GWPFLEVE_					0	0	0			REV__ENST00000561415.1_1_14:24633725-24635402:+|nuORF	REV__ENST00000561415.1_1_14:24633725-24635402:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2684326171875	2	488.742368	975.470183	-0.10026	-4.9002E-05	-2.6031	-0.0012722	-2.7034	-0.0013212	488.7434458498832	41.604	0.15838	41.374	41.313	41.472	-0.23029					5	3	2	0	0	0	0.027866	1	3682	3682		50.025	0	1	40677	+		22201	35172	15270	15304	25824	25824					-0.018533063681502426
GWPGAALRKS	10	Unmodified	_GWPGAALRKS_					0	0	0			REV__ENST00000407595.2_1_2:56411425-56411587:+|nuORF	REV__ENST00000407595.2_1_2:56411425-56411587:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3325805664062	2	521.793258	1041.57196	-0.21099	-0.00011009	1.2014	0.0006269	0.99044	0.0005168	521.7934849424947	39.585	0.39164	39.362	39.111	39.503	-0.22311					16	9	2	0	0	0	0.03519	1	3366	3366		30.318	0	1	253350	+		22202	31938	15271	15305	25825	25825					0.05283984774268902
GWPPALEP	8	Unmodified	_GWPPALEP_					0	0	0			REV__ENST00000315150.9_1_3:128807140-128807500:-|nuORF	REV__ENST00000315150.9_1_3:128807140-128807500:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.74456787109375	2	433.723978	865.433404	-0.48007	-0.00020822	-3.9578	-0.0017166	-4.4379	-0.0019248	433.72206333895537	28.102	0.56639	27.857	27.635	28.202	-0.24524					29	13	3	0	0	0	0.027866	1	1624	1624		35.201	6.9464	1	412130	+		22203	30253	15272	15306	25826	25826					-0.004695581940609372
GWQEDSEND	9	Unmodified	_GWQEDSEND_					0	0	0		nc|ENSG00000062194|Q86WP2-4|GPBP1;nc|ENSG00000062194|Q86WP2-3|GPBP1;ENSG00000062194|ENST00000506184|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.28955078125	2	540.19925	1078.38395	-1.3831	-0.00074713	1.2292	0.00066399	-0.15391	-8.3142E-05	540.1999892517159	53.512	0.32604	53.365	53.203	53.529	-0.14723					10	8	2	0	0	0	0.024541	1	5761	5761		15.642	0	1	83606			22204	1249	15273	15307	25827	25827					-0.15210962731453037
GWQLLGLLL	9	Unmodified	_GWQLLGLLL_					0	0	0		ENST00000322652.9_1_17:30264237-30264510:+|nuORF	ENST00000322652.9_1_17:30264237-30264510:+|nuORF	ENST00000322652.9_1_17:30264237-30264510:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8141784667969	2	506.813128	1011.6117	-0.76083	-0.0003856	-4.1773	-0.0021171	-4.9381	-0.0025027	506.8111194725813	54.608	1.2505	54.608	54.214	55.464	0					119	35	5	0	0	0	0.26797	1	6021	6021		79.939	2.6216	1	40876000			22205	12227	15274	15308	25828	25828					0.10636111725011688
GWQWSDGTP	9	Unmodified	_GWQWSDGTP_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1;PLA2R1|p.L877Tfs*8|1|0.13|ENSG00000153246|chr2:159970180-159970181|-/C|frameshift_variant	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2282104492188	2	517.222331	1032.43011	-0.31062	-0.00016066	3.5273	0.0018244	3.2167	0.0016637	517.7266727989982	61.95	0.46871	61.736	61.544	62.012	-0.21375					17	11	2	0	0	0	0.024381	1	6986	6986		45.952	15.634	1	142150			22206	6335	15275	15309	25829	25829					-0.08480853038713576
GWQWSDGTP	9	Unmodified	_GWQWSDGTP_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1;PLA2R1|p.L877Tfs*8|1|0.13|ENSG00000153246|chr2:159970180-159970181|-/C|frameshift_variant	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	517.222331	1032.43011	-0.72853	-0.00037681	3.6438	0.0018846	2.9153	0.0015078	517.726604528096	61.907	0.50306	61.73	61.576	62.079	-0.17781	-0.0033702	6.2307E-05	NaN	45.952	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133670			22207	6335	15275	15309							-0.08480853038713576
GWRKLGPG	8	Unmodified	_GWRKLGPG_					0	0	0			REV__ENSG00000125505|ENST00000245615|MBOAT7	REV__ENSG00000125505|ENST00000245615|MBOAT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.24871826171875	2	435.750862	869.487171	1.1122	0.00048462	4.0501	0.0017649	5.1623	0.0022495	435.75077093762917	70.694	0.13114	70.694	70.613	70.744	0					4	2	2	0	0	0	0.027866	1	8542	8542		37.028	0	1	62010	+		22208	22826	15276	15310	25830	25830					0.04720659028339469
GWRLSYRAAG	10	Unmodified	_GWRLSYRAAG_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.3455810546875	2	568.801614	1135.58868	-1.2172	-0.00069236	-0.91823	-0.00052229	-2.1355	-0.0012147	568.8000243903691	35.693	0.24122	35.65	35.447	35.688	-0.042454					6	5	2	0	0	0	0.03519	1	2738	2738		63.534	13.998	1	31517			22209	4231	15277	15311	25831	25831					0.026304856602109794
GWRLSYRAAG	10	Unmodified	_GWRLSYRAAG_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	568.801614	1135.58868	-1.5492	-0.0008812	1.3137	0.00074723	-0.23554	-0.00013398	568.8022363756934	35.899	0.2248	35.899	35.769	35.994	0	0.12426	0.0013229	NaN	72.879	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84707			22210	4231	15277	15311							0.026304856602109794
GWRLSYVKQ	9	Unmodified	_GWRLSYVKQ_					0	0	0			REV__CON__Q32PI4	REV__CON__Q32PI4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.3455810546875	2	568.81419	1135.61383	-1.4962	-0.00085108	1.2558	0.00071434	-0.2404	-0.00013674	568.8148816387342	35.772	0.39318	35.772	35.531	35.924	0					22	9	3	0	0	0	0.022411	1	2773	2773		90.37	35.594	1	230250	+	+	22211	19581	15278	15312	25832	25832					0.05144540462788427
GWRLSYVKQ	9	Unmodified	_GWRLSYVKQ_					0	0	0			REV__CON__Q32PI4	REV__CON__Q32PI4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.3455810546875	2	568.81419	1135.61383	-1.1994	-0.00068222	1.0659	0.00060631	-0.13346	-7.5913E-05	568.8145013381995	35.598	0.5132	35.576	35.233	35.747	-0.021763					23	12	3	0	0	0	0.024025	1	2738	2738		71.877	10.906	1	196560	+	+	22212	19581	15278	15312	25833	25833					0.05144540462788427
GWRRKQVL	8	Unmodified	_GWRRKQVL_					0	0	0		ENST00000565341.5_1_16:784529-790985:-|nuORF	ENST00000565341.5_1_16:784529-790985:-|nuORF	ENST00000565341.5_1_16:784529-790985:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7320556640625	2	521.817067	1041.61958	-0.7534	-0.00039314	-0.77449	-0.00040414	-1.5279	-0.00079728	521.8165326201938	38.097	0.47095	37.918	37.665	38.136	-0.17929					21	13	2	0	0	0	0.027866	1	3146	3146		19.36	3.7182	1	340170			22213	16915	15279	15313	25834	25834					0.10043683765138667
GWRRTNLKT	9	Unmodified	_GWRRTNLKT_					0	0	0		ENST00000524348.1_1_8:123821392-123827663:+|nuORF	ENST00000524348.1_1_8:123821392-123827663:+|nuORF	ENST00000524348.1_1_8:123821392-123827663:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.7716064453125	2	566.322714	1130.63087	-1.0679	-0.00060477	2.5196	0.0014269	1.4517	0.00082213	566.323999951742	44.498	0.52053	44.279	44.108	44.628	-0.21939					23	13	2	0	0	0	0.024367	1	4170	4170		62.107	22.855	1	551550			22214	16060	15280	15314	25835	25835					0.07078461068590514
GWRSGHAGSDP	11	Unmodified	_GWRSGHAGSDP_					0	0	0		ENST00000253099.10_2_19:10362751-10362841:+|nuORF	ENST00000253099.10_2_19:10362751-10362841:+|nuORF	ENST00000253099.10_2_19:10362751-10362841:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.7571411132812	2	563.754861	1125.49517	-0.83698	-0.00047185	-2.3036	-0.0012987	-3.1406	-0.0017705	564.2555697468191	32.392	0.49257	32.392	32.186	32.679	0					26	12	3	0	0	0	0.024797	1	2240	2240		63.534	24.281	1	123730			22215	11367	15281	15315	25836	25836					-0.06255858512849954
GWRTIIAL	8	Unmodified	_GWRTIIAL_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2690734863281	2	465.281995	928.549437	0.33376	0.00015529	-1.8267	-0.00084994	-1.493	-0.00069465	465.2811621939645	66.046	0.19185	66.046	65.913	66.105	0					8	4	2	0	0	0	0.027866	1	7832	7832		33.516	0	1	113000	+		22216	28508	15282	15316	25837	25837					0.08230385376668892
GWSAVRSV	8	Unmodified	_GWSAVRSV_					0	0	0		ENST00000487667.5_1_6:33380068-33381198:+|nuORF	ENST00000487667.5_1_6:33380068-33381198:+|nuORF	ENST00000487667.5_1_6:33380068-33381198:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.8523254394531	2	431.232502	860.450451	0.14723	6.3492E-05	0.53662	0.00023141	0.68385	0.0002949	431.2327522521521	45.754	0.37798	45.798	45.58	45.958	0.043877					16	10	2	0	0	0	0.027866	1	4421	4421		11.511	0	1	269060			22217	15371	15283	15317	25838	25838					0.014643624117638865
GWSELYRTMR	10	Unmodified	_GWSELYRTMR_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7;REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.54827880859375	3	433.548523	1297.62374	0.57212	0.00024804	-1.3404	-0.00058115	-0.76833	-0.00033311	433.54795475832015	24.534	1.8981	24.613	23.394	25.293	0.078344					147	42	5	0	0	0	1.0814	1	1030	1030		35.178	5.0391	1	1286500	+		22218	22588;20609	15284	15318	25839	25839					-0.013166395941652809
GWSITPLMY	9	Unmodified	_GWSITPLMY_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ENSG00000165029|ENST00000374736|ABCA1;nc|ENSG00000064687|Q8IZY2-2|ABCA7	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7508544921875	2	534.265153	1066.51575	-0.63923	-0.00034152	0.41114	0.00021966	-0.22809	-0.00012186	534.2649566503488	39.963	0.38446	39.738	39.62	40.004	-0.225					13	9	2	0	0	0	0.024262	1	3443	3443		47.916	0	1	125070			22219	7358;1280	15285	15319	25840	25840					-0.014844041774040306
GWSITPLMY	9	Unmodified	_GWSITPLMY_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ENSG00000165029|ENST00000374736|ABCA1;nc|ENSG00000064687|Q8IZY2-2|ABCA7	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.752197265625	2	534.265153	1066.51575	-0.96548	-0.00051582	-4.2314	-0.0022607	-5.1969	-0.0027765	534.2623737570428	40.082	0.38644	39.852	39.66	40.046	-0.23021					14	9	2	0	0	0	0.024381	1	3444	3444		45.952	0	1	135130			22220	7358;1280	15285	15319	25841	25841					-0.014844041774040306
GWSRFWDGVK	10	Unmodified	_GWSRFWDGVK_					0	0	0			REV__ENSG00000226887|ENST00000443173|ERVMER34-1	REV__ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.8839111328125	3	413.208607	1236.60399	0.011215	4.6343E-06	-2.7627	-0.0011416	-2.7515	-0.0011369	413.54101065419593	27.527	0.53997	27.371	27.145	27.685	-0.15664					14	12	2	0	0	0	0.03519	1	1540	1540		21.78	14.762	1	118120	+		22221	28879	15286	15320	25842	25842					-0.004846475425893004
GWSVKMGPAL	10	Unmodified	_GWSVKMGPAL_					0	0	0		ENSG00000137942|ENST00000271234|FNBP1L	ENSG00000137942|ENST00000271234|FNBP1L	ENSG00000137942|ENST00000271234|FNBP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2774658203125	2	523.278595	1044.54264	0.42974	0.00022488	4.4349	0.0023207	4.8647	0.0025456	523.2808860179908	56.863	0.50131	56.638	56.386	56.887	-0.2248					16	12	2	0	0	0	0.03519	1	6148	6148		35.618	16.258	1	206330			22222	5177	15287	15321	25843	25843					0.02214704433777115
GWSVMLLSSS	10	Unmodified	_GWSVMLLSSS_					0	0	0			REV__ENST00000340196.8_1_17:20224590-20239407:+|nuORF	REV__ENST00000340196.8_1_17:20224590-20239407:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.247802734375	2	533.765517	1065.51648	-0.92332	-0.00049283	-2.8726	-0.0015333	-3.7959	-0.0020261	533.764334746076	49.028	0.29161	48.748	48.682	48.973	-0.27977					9	7	2	0	0	0	0.03519	1	4899	4899		21.96	0	1	226400	+		22223	30614	15288	15322	25844	25844					-0.013656095283295144
GWTHSGAVLLA	11	Unmodified	_GWTHSGAVLLA_					0	0	0			REV__OR5D13|p.Y151H|1|0.29|ENSG00000279761|chr11:55773888-55773888|T/C|missense_variant	REV__OR5D13|p.Y151H|1|0.29|ENSG00000279761|chr11:55773888-55773888|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2968139648438	2	556.298373	1110.58219	0.18915	0.00010522	-1.8583	-0.0010338	-1.6691	-0.00092854	556.297280756981	107.21	0.50556	107.21	106.96	107.47	0.0018311					25	13	2	0	0	0	0.98218	1	13685	13685		40.778	10.46	1	150730	+		22224	37320	15289	15323	25845	25845					0.03132547708855782
GWYQDMEHQCK	11	Unmodified	_GWYQDMEHQCK_					0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2601318359375	3	475.528911	1423.56491	0.078934	3.7535E-05	-1.6955	-0.00080628	-1.6166	-0.00076874	475.86224966430575	50.31	0.3069	50.03	49.839	50.145	-0.27977					11	7	2	0	0	0	0.024856	1	5106	5106		9.2118	0	1	90356	+		22225	20000	15290	15324	25846	25846					-0.12993483950776863
GWYQDMEHQCK	11	Unmodified	_GWYQDMEHQCK_					0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	475.528911	1423.56491	0.48485	0.00023056	-1.7597	-0.00083677	-1.2748	-0.00060621	475.52790752047787	49.931	0.30276	49.825	49.708	50.011	-0.10558	-0.095105	-0.00012702	NaN	5.6988	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93905	+		22226	20000	15290	15324							-0.12993483950776863
GWYQDMEHQCK	11	Unmodified	_GWYQDMEHQCK_					0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	475.528911	1423.56491	0.37461	0.00017814	-1.585	-0.00075372	-1.2104	-0.00057559	475.86254286314187	50.086	0.26444	49.905	49.752	50.017	-0.18071	-0.014886	0.0001221	NaN	5.6988	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96439	+		22227	20000	15290	15324							-0.12993483950776863
GYADRVVEY	9	Unmodified	_GYADRVVEY_					0	0	0			REV__ENSG00000084774|ENST00000264705|CAD	REV__ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2595825195312	2	536.258914	1070.50327	-0.41088	-0.00022034	-2.8986	-0.0015544	-3.3095	-0.0017747	536.2590527194156	53.547	1.104	53.288	52.803	53.907	-0.25839					85	31	4	0	0	0	0.56934	2	5626	5616;5626		54.776	11.912	1	4068000	+		22228	20743	15291	15325	25847;25848	25848					-0.029157243160852886
GYADRVVEY	9	Unmodified	_GYADRVVEY_					0	0	0			REV__ENSG00000084774|ENST00000264705|CAD	REV__ENSG00000084774|ENST00000264705|CAD	MSMS	OPSCC_40_ClassI_Rep-3	6	536.2590942382812	2	536.258914	1070.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.508	1	53.311	52.811	53.811	-0.19739								0	0	0	0.42073	1	5603	5603		60.118	14.166	1		+		22229	20743	15291	15325	25849	25849					-0.029157243160852886
GYAPPYVL	8	Unmodified	_GYAPPYVL_					0	0	0			REV__nc|ENSG00000160685|O15156-2|ZBTB7B	REV__nc|ENSG00000160685|O15156-2|ZBTB7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.85369873046875	2	440.234179	878.453805	-0.35244	-0.00015516	-4.134	-0.0018199	-4.4864	-0.0019751	440.2322602899693	31.706	0.72875	31.465	31.221	31.95	-0.24109					26	17	2	0	0	0	0.027866	1	2160	2160		24.504	5.144	1	359900	+		22230	25334	15292	15326	25850	25850					0.00971612465752969
GYATLIQTL	9	Unmodified	_GYATLIQTL_					0	0	0		nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2795715332031	2	490.276575	978.538597	-0.14485	-7.1016E-05	0.045925	2.2516E-05	-0.098923	-4.85E-05	490.27645025573577	101.31	0.95134	101.32	100.7	101.65	0.0090332					41	21	3	0	0	0	0.67687	1	12946	12946		47.657	3.2801	1	618450			22231	8188	15293	15327	25851	25851					0.04846938211710494
GYAVAGPCN	9	Unmodified	_GYAVAGPCN_					0	0	0			REV__ENST00000380711.3_1_22:51021469-51022136:+|nuORF	REV__ENST00000380711.3_1_22:51021469-51022136:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.2462158203125	2	426.189445	850.364338	0.53206	0.00022676	4.2398	0.001807	4.7719	0.0020337	426.1910768077394	89.475	0.64457	89.337	89.148	89.793	-0.13761					22	14	2	0	0	0	0.024354	1	10935	10935		47.916	34.14	1	69269	+		22232	31493	15294	15328	25852	25852					-0.06682965485265413
GYAYVDFNY	9	Unmodified	_GYAYVDFNY_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.8057861328125	2	556.24019	1110.46583	-0.89871	-0.0004999	0.18364	0.00010215	-0.71507	-0.00039775	556.2401012243416	33.158	0.51881	32.992	32.76	33.278	-0.16565					20	12	2	0	0	0	0.024495	1	2323	2323		26.693	0	1	234980			22233	10472	15295	15329	25853	25853					-0.0849881558172001
GYCAPPYIY	9	Unmodified	_GYCAPPYIY_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3135986328125	2	523.736228	1045.4579	-0.36652	-0.00019196	3.0202	0.0015818	2.6536	0.0013898	523.7375995631515	73.655	0.63353	73.378	73.051	73.685	-0.2769					41	15	3	0	0	0	0.024475	1	8650	8650		21.702	0	1	2152700			22234	4213	15296	15330	25854	25854					-0.0630066610283393
GYCRRLLVCA	10	Unmodified	_GYCRRLLVCA_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3035888671875	2	577.302078	1152.5896	0.36556	0.00021104	4.0288	0.0023258	4.3944	0.0025369	577.3049106047871	102.34	0.46329	102.21	102.03	102.49	-0.12931					18	10	2	0	0	0	1.1166	1	12704	12704		30.504	1.3541	1	68548			22235	15014	15297	15331	25855	25855					0.019412407132904264
GYCSECRDPD	10	Carbamidomethyl (C)	_GYC(Carbamidomethyl (C))SECRDPD_	GYC(0.997)SEC(0.003)RDPD		GYC(25)SEC(-25)RDPD		0	1	0			REV__ENST00000489071.5_1_20:34135089-34136623:+|nuORF	REV__ENST00000489071.5_1_20:34135089-34136623:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.2162475585938	2	601.216063	1200.41757	-1.0382	-0.00062419	0.89661	0.00053906	-0.14161	-8.5137E-05	601.2165293324409	30.736	0.70812	30.557	30.243	30.952	-0.17818					36	16	3	0	0	0	1.0393	1	1974	1974		40.778	6.6056	2	1355800	+		22236	22870	15298	15332	25856	25856	299				-0.1746200055558802
GYCSNQLAAKA	11	Unmodified	_GYCSNQLAAKA_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.3438110351562	2	563.271498	1124.52844	-0.45012	-0.00025354	1.2876	0.00072527	0.83749	0.00047174	563.2721983785017	88.56	0.70992	88.389	88.131	88.841	-0.17054					25	16	2	0	0	0	0.024749	1	10841	10841		25.574	9.9322	1	217750			22237	8417	15299	15333	25857	25857					-0.028839927851777247
GYDQTIKKAF	10	Unmodified	_GYDQTIKKAF_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	585.8116455078125	2	585.811313	1169.60807	-0.11875	-6.9567E-05	0.26136	0.00015311	0.14261	8.3543E-05	585.8114029564722	27.545	0.8968	27.626	27.392	28.289	0.081293					58	22	4	0	0	0	0.91678	1	1487	1487		52.937	3.4952	1	4145700	+		22238	20915	15300	15334	25858	25858					0.030053971604729668
GYEAAVGLPTV	11	Unmodified	_GYEAAVGLPTV_					0	0	0			REV__ENSG00000146809|ENST00000451215|ASB15	REV__ENSG00000146809|ENST00000451215|ASB15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.7835083007812	2	538.784764	1075.55498	2.0999	0.0011314	-4.4725	-0.0024097	-2.3726	-0.0012783	538.7821524274455	19.299	0.59307	19.365	19.093	19.687	0.066195					30	11	4	0	0	0	0.84811	1	353	353		54.776	2.4771	1	252890	+		22239	24510	15301	15335	25859	25859					0.02022019377795914
GYEELLTAKP	10	Unmodified	_GYEELLTAKP_					0	0	0		ENST00000531849.5_1_11:74554845-74617298:-|nuORF;nc|ENSG00000166435|Q6P2D8-5|XRRA1;nc|ENSG00000166435|Q6P2D8-2|XRRA1;nc|ENSG00000166435|Q6P2D8-4|XRRA1;nc|ENSG00000166435|Q6P2D8-3|XRRA1;nc|ENSG00000166435|Q6P2D8|XRRA1;ENSG00000166435|ENST00000684022|XRRA1;ENST00000431210.2_1_11:74555176-74574187:-|nuORF	ENST00000531849.5_1_11:74554845-74617298:-|nuORF	ENST00000531849.5_1_11:74554845-74617298:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.79833984375	2	560.797872	1119.58119	1.4421	0.0008087	-0.87	-0.00048789	0.57206	0.00032081	560.7973123147171	16.885	1.5287	16.731	16.524	18.053	-0.15376					55	30	4	0	0	0	1.1307	1	130	130		26.693	2.1737	1	1173700			22240	7558	15302	15336	25860	25860					0.02618288549274439
GYENLFSEV	9	Unmodified	_GYENLFSEV_					0	0	0			REV__nc|ENSG00000116703|P20941-2|PDC	REV__nc|ENSG00000116703|P20941-2|PDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.813720703125	2	529.245472	1056.47639	-0.30323	-0.00016049	-2.9908	-0.0015829	-3.294	-0.0017434	529.7443389197421	29.199	0.26038	29.05	28.869	29.129	-0.14952					7	5	2	0	0	0	0.024436	1	1746	1746		38.806	1.647	1	70291	+		22241	22294	15303	15337	25861	25861					-0.04958832927286494
GYFHEPGVAV	10	Unmodified	_GYFHEPGVAV_					0	0	0			REV__ENSG00000005421|ENST00000222381|PON1	REV__ENSG00000005421|ENST00000222381|PON1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.287109375	2	538.263999	1074.51345	-0.75168	-0.0004046	3.0046	0.0016173	2.2529	0.0012127	538.2645223845846	91.547	0.25594	91.424	91.243	91.499	-0.12341					6	5	2	0	0	0	0.03519	1	11244	11244		44.117	21.074	1	19103	+		22242	19805	15304	15338	25862	25862					-0.020831165908703042
GYGIQVGRRK	10	Unmodified	_GYGIQVGRRK_					0	0	0			REV__MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|56|2|anti-sense	REV__MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|56|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.1329	1	11619	11619		27.882	3.6795	1	13648000	+		22243	36362	15305	15339	25863	25863					0.0855074758567298
GYGRPRQI	8	Unmodified	_GYGRPRQI_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7644348144531	2	473.764501	945.514448	-0.93601	-0.00044345	0.87571	0.00041488	-0.060293	-2.8565E-05	473.7648438780168	28.561	0.87441	28.315	27.921	28.796	-0.24524					46	20	3	0	0	0	0.94001	1	1685	1685		46.766	2.6496	1	1313200			22244	6106	15306	15340	25864	25864					0.03951142568701016
GYGRPRQI	8	Unmodified	_GYGRPRQI_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7646179199219	2	473.764501	945.514448	-0.54053	-0.00025609	0.45172	0.00021401	-0.088817	-4.2078E-05	473.764646220426	28.418	0.95946	28.249	27.768	28.727	-0.16897					61	22	4	0	0	0	0.71717	2	1660	1660;1673		65.897	5.6035	1	1945700			22245	6106	15306	15340	25865;25866	25865					0.03951142568701016
GYGRPRQI	8	Unmodified	_GYGRPRQI_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.764404296875	2	473.764501	945.514448	-0.61377	-0.00029078	0.5275	0.00024991	-0.086265	-4.0869E-05	473.76464372116556	28.446	0.9012	28.294	27.922	28.824	-0.15195					52	21	4	0	0	0	0.85409	1	1632	1632		54.765	4.7401	1	2336100			22246	6106	15306	15340	25867	25867					0.03951142568701016
GYHGLGPQRS	10	Unmodified	_GYHGLGPQRS_					0	0	0		ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3131103515625	2	536.270147	1070.52574	-1.4843	-0.000796	0.9955	0.00053386	-0.48882	-0.00026214	536.2705732172392	85.971	0.72828	85.995	85.778	86.506	0.023666					22	16	2	0	0	0	0.03519	1	10784	10784		44.117	12.162	1	67991			22247	4354	15307	15341	25868	25868					-0.006700801278157087
GYHLLAPM	8	Unmodified	_GYHLLAPM_					0	0	0			REV__ENST00000319394.7_1_1:27633464-27633656:+|nuORF	REV__ENST00000319394.7_1_1:27633464-27633656:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7816467285156	2	451.233656	900.452759	0.36117	0.00016297	-4.035	-0.0018207	-3.6738	-0.0016578	451.231260507739	98.181	0.50032	98.181	97.898	98.398	0					18	11	2	0	0	0	0.027866	1	12537	12537		33.493	0	1	46099	+		22248	30325	15308	15342	25869	25869					-0.0014492517479993694
GYHQRTLLD	9	Unmodified	_GYHQRTLLD_					0	0	0		nc|ENSG00000155886|Q9UI40-2|SLC24A2;ENSG00000155886|ENST00000341998|SLC24A2	nc|ENSG00000155886|Q9UI40-2|SLC24A2	nc|ENSG00000155886|Q9UI40-2|SLC24A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7828979492188	2	551.78563	1101.55671	-0.51948	-0.00028664	3.7294	0.0020579	3.21	0.0017712	551.7876146096759	41.588	1.0987	41.358	40.733	41.832	-0.2303					43	28	2	0	0	0	0.024487	1	3673	3673		17.365	0	1	1735600			22249	6494	15309	15343	25870	25870					0.00999073186426358
GYHSVLGPM	9	Unmodified	_GYHSVLGPM_					0	0	0			REV__ENST00000592226.5_1_17:42458037-42462568:-|nuORF	REV__ENST00000592226.5_1_17:42458037-42462568:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.73126220703125	2	480.73402	959.453487	-0.13761	-6.6153E-05	-3.8859	-0.0018681	-4.0235	-0.0019342	480.7321315524798	31.624	6.3562	31.624	29.773	36.129	0					309	163	4	0	0	0	0.64155	1	2107	2107		50.025	2.1089	1	7088900	+		22250	35743	15310	15344	25871	25871					-0.027861305257260938
GYIDKVRQL	9	Unmodified	_GYIDKVRQL_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.292236328125	2	546.314023	1090.61349	-0.38538	-0.00021054	-1.03	-0.00056268	-1.4153	-0.00077322	546.3138002445872	47.432	0.51308	47.335	47.008	47.521	-0.096649					22	13	3	0	0	0	0.024539	1	4622	4622		35.618	0	1	228920			22251	2167	15311	15345	25872	25872					0.07181120742961866
GYIHLSGG	8	Unmodified	_GYIHLSGG_					0	0	0		nc|ENSG00000204936|Q8N6Q3|CD177;ENSG00000204936|ENST00000618265|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	402.2054138183594	2	402.205953	802.397353	1.094	0.00044	-1.9387	-0.00077974	-0.84469	-0.00033974	402.20510936484203	95.336	1.7812	95.336	94.659	96.44	0					129	41	5	0	0	0	0.98906	4	12110	12110;12122;12158;12182		39.021	3.8208	1	7302700			22252	10392	15312	15346	25873;25874;25875;25876	25873					-0.011750153708931066
GYIHLSGG	8	Unmodified	_GYIHLSGG_					0	0	0		nc|ENSG00000204936|Q8N6Q3|CD177;ENSG00000204936|ENST00000618265|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.20562744140625	2	402.205953	802.397353	0.85638	0.00034444	-1.7043	-0.00068547	-0.8479	-0.00034103	402.2052083095665	95.436	1.7876	95.439	94.87	96.657	0.0033722					115	41	4	0	0	0	0.98906	1	12161	12161		39.021	0.21535	1	7412800			22253	10392	15312	15346	25877	25877					-0.011750153708931066
GYIHLSGG	8	Unmodified	_GYIHLSGG_					0	0	0		nc|ENSG00000204936|Q8N6Q3|CD177;ENSG00000204936|ENST00000618265|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.2053527832031	2	402.205953	802.397353	0.92344	0.00037141	-1.6792	-0.00067539	-0.75578	-0.00030398	402.2052180634848	96.013	2.0859	95.876	95.199	97.285	-0.1367					136	47	4	0	0	0	0.98906	1	11833	11833		39.021	5.5059	1	5342800			22254	10392	15312	15346	25878	25878					-0.011750153708931066
GYIHLSGG	8	Unmodified	_GYIHLSGG_					0	0	0		nc|ENSG00000204936|Q8N6Q3|CD177;ENSG00000204936|ENST00000618265|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.2049865722656	2	402.205953	802.397353	-0.56388	-0.0002268	-0.30876	-0.00012418	-0.87264	-0.00035098	402.20578555267815	96.135	1.8234	95.979	95.4	97.223	-0.15646					111	41	4	0	0	0	1.0017	1	11824	11824		37.028	5.0736	1	4321200			22255	10392	15312	15346	25879	25879					-0.011750153708931066
GYIKGIVKDI	10	Unmodified	_GYIKGIVKDI_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000528296.5_1_8:146015816-146017457:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.3319702148438	2	553.334424	1104.6543	-0.10787	-5.9689E-05	-3.4609	-0.001915	-3.5688	-0.0019747	553.3323260230788	95.491	1.2442	95.354	94.938	96.182	-0.13689					88	28	5	0	0	0	1.0616	1	11785	11785		37.812	8.662	1	4161900			22256	6859	15313	15347	25880	25880					0.10615462062582992
GYILLLPIF	9	Unmodified	_GYILLLPIF_					0	0	0			REV__ENSG00000180433|ENST00000641861|OR6K6	REV__ENSG00000180433|ENST00000641861|OR6K6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.8269653320312	2	524.825704	1047.63685	0.79891	0.00041929	1.558	0.00081767	2.3569	0.001237	524.8264135376637	97.953	2.024	97.951	97.456	99.48	-0.0020828					149	46	5	0	0	0	0.99355	1	12465	12465		21.702	0.7554	1	12702000	+		22257	27342	15314	15348	25881	25881					0.1149416652756372
GYILVGAKEL	10	Unmodified	_GYILVGAKEL_					0	0	0		CON__Q28065	CON__Q28065	CON__Q28065	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.81884765625	2	531.813325	1061.6121	-0.22307	-0.00011863	4.0192	0.0021375	3.7961	0.0020188	531.8167036269791	98.678	0.74287	98.511	98.198	98.941	-0.16721					23	16	2	0	0	0	1.089	1	12213	12213		34.173	0.65696	1	81889		+	22258	542	15315	15349	25882	25882					0.08375486654176711
GYIPANHVGKH	11	Unmodified	_GYIPANHVGKH_					0	0	0		nc|ENSG00000160310|P55345-6|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;nc|ENSG00000160310|P55345-7|PRMT2;nc|ENSG00000160310|P55345-2|PRMT2;nc|ENSG00000160310|P55345-4|PRMT2;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-5|PRMT2;nc|ENSG00000160310|P55345-3|PRMT2;PRMT2-WRB|1|fusion;ENSG00000160310|ENST00000355680|PRMT2	nc|ENSG00000160310|P55345-6|PRMT2	nc|ENSG00000160310|P55345-6|PRMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	596.8170166015625	2	596.814722	1191.61489	-0.76372	-0.0004558	3.5987	0.0021478	2.835	0.001692	596.8167418363746	34.333	1.05	34.329	33.908	34.958	-0.0045624					72	26	4	0	0	0	0.99553	1	2553	2553		37.812	4.2959	1	2508800			22259	6805	15316	15350	25883	25883					0.026747548317189285
GYIQKKKEL	9	Unmodified	_GYIQKKKEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.83056640625	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.85329	1	11411	11411		35.618	1.4457	1	4896800			22260	5359	15317	15351	25884	25884					0.10094577919812764
GYIQKKKEL	9	Unmodified	_GYIQKKKEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8298950195312	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	0.85329	1	10646	10646		35.618	1.4457	1	1711900			22261	5359	15317	15351	25885	25885					0.10094577919812764
GYIQKKKEL	9	Unmodified	_GYIQKKKEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8298950195312	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.67687	1	10661	10661		47.657	6.8792	1	1748900			22262	5359	15317	15351	25886	25886					0.10094577919812764
GYIQKKKEL	9	Unmodified	_GYIQKKKEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8304443359375	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.72875	1	11027	11027		44.117	5.3107	1	6921700			22263	5359	15317	15351	25887	25887					0.10094577919812764
GYIQKKKEL	9	Unmodified	_GYIQKKKEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.830078125	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	0.70186	1	10938	10938		45.952	5.1738	1	5986700			22264	5359	15317	15351	25888	25888					0.10094577919812764
GYISRCFTRKY	11	Unmodified	_GYISRCFTRKY_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2373046875	3	465.23969	1392.69724	-0.3812	-0.00017735	2.3694	0.0011023	1.9882	0.00092498	465.24074709594254	28.288	0.62453	28.284	28.04	28.665	-0.0042019					28	14	3	0	0	0	0.024834	1	1628	1628		12.957	5.2781	1	184450			22265	2767	15318	15352	25889	25889					0.01659908848341729
GYIWHLIHA	9	Unmodified	_GYIWHLIHA_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.3220825195312	2	555.298176	1108.5818	-1.5371	-0.00085353	3.7062	0.002058	2.1691	0.0012045	555.3000885786727	91.917	2.3177	91.768	90.853	93.17	-0.1487					82	54	2	0	0	0	0.024475	1	11236	11236		14.664	4.9584	1	112960			22266	4674	15319	15353	25890	25890					0.0318517277967203
GYIWHLIHA	9	Unmodified	_GYIWHLIHA_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.298176	1108.5818	-0.59989	-0.00033312	1.0544	0.00058549	0.45447	0.00025237	555.298554063566	91.798	0.76402	91.787	91.199	91.963	-0.010857	0.083077	-0.0012768	NaN	8.8223	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116430			22267	4674	15319	15353							0.0318517277967203
GYIYQKYL	8	Unmodified	_GYIYQKYL_					0	0	0			REV__ENST00000437176.5_1_14:75936668-75936947:+|nuORF	REV__ENST00000437176.5_1_14:75936668-75936947:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2264404296875	2	524.279118	1046.54368	0.056913	2.9838E-05	-3.6545	-0.001916	-3.5976	-0.0018861	524.2764762559175	52.881	0.36105	52.691	52.47	52.831	-0.18982					9	8	2	0	0	0	0.027866	1	5477	5477		44.531	10.359	1	87643	+		22268	32472	15320	15354	25891	25891					0.022272420743320254
GYKDVVHIT	9	Unmodified	_GYKDVVHIT_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2507934570312	2	516.279649	1030.54475	0.059758	3.0852E-05	-1.1361	-0.00058655	-1.0763	-0.00055569	516.2792575139538	46.808	0.90982	46.538	45.998	46.908	-0.26939					71	24	5	0	0	0	0.024323	1	4531	4531		53.351	7.3995	1	1513000	+		22269	36664	15321	15355	25892	25892					0.030694564432451443
GYKILVKQAS	10	Unmodified	_GYKILVKQAS_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	0.941	1	10678	10678		51.335	13.524	1	1711900	+		22270	27255	15322	15356	25893	25893					0.10094577919812764
GYKILVKQAS	10	Unmodified	_GYKILVKQAS_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8305053710938	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0393	2	11006	11006;11123		40.778	8.5985	1	6583300	+		22271	27255	15322	15356	25894;25895	25894					0.10094577919812764
GYKILVKQAS	10	Unmodified	_GYKILVKQAS_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8306884765625	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.0142	1	11052	11052		44.117	14.967	1	6921700	+		22272	27255	15322	15356	25896	25896					0.10094577919812764
GYKKDLLSPL	10	Unmodified	_GYKKDLLSPL_					0	0	0		ENST00000488236.5_1_3:9495468-9506425:+|nuORF	ENST00000488236.5_1_3:9495468-9506425:+|nuORF	ENST00000488236.5_1_3:9495468-9506425:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.329345703125	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0508	1	11283	11283		39.253	5.0803	1	4298500			22273	15389	15323	15357	25897	25897					0.0881915819995811
GYKKDLLSPL	10	Unmodified	_GYKKDLLSPL_					0	0	0		ENST00000488236.5_1_3:9495468-9506425:+|nuORF	ENST00000488236.5_1_3:9495468-9506425:+|nuORF	ENST00000488236.5_1_3:9495468-9506425:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3301391601562	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0816	1	11058	11058		35.152	4.8343	1	4116000			22274	15389	15323	15357	25898	25898					0.0881915819995811
GYKKDLLSPL	10	Unmodified	_GYKKDLLSPL_					0	0	0		ENST00000488236.5_1_3:9495468-9506425:+|nuORF	ENST00000488236.5_1_3:9495468-9506425:+|nuORF	ENST00000488236.5_1_3:9495468-9506425:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3297119140625	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.1307	1	11247	11247		26.693	1.1189	1	19210000			22275	15389	15323	15357	25899	25899					0.0881915819995811
GYKKLEQLK	9	Unmodified	_GYKKLEQLK_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8300170898438	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	0.6504	1	11110	11110		49.442	13.823	1	5986700	+		22276	25684	15324	15358	25900	25900					0.10094577919790026
GYKNIATVRFT	11	Unmodified	_GYKNIATVRFT_					0	0	0			REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.862548828125	3	423.903183	1268.68772	-0.23365	-9.9046E-05	-4.2826	-0.0018154	-4.5163	-0.0019145	423.9011209391067	30.161	0.34157	29.917	29.737	30.079	-0.24415					10	7	2	0	0	0	0.024735	1	1879	1879		34.087	5.5098	1	49605	+		22277	28514	15325	15359	25901	25901					0.06412463834453774
GYLEKKKSVV	10	Unmodified	_GYLEKKKSVV_					0	0	0		ENST00000338910.8_1_13:20277187-20277373:-|nuORF	ENST00000338910.8_1_13:20277187-20277373:-|nuORF	ENST00000338910.8_1_13:20277187-20277373:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	1.089	1	10875	10875		34.173	2.6427	1	1877500			22278	12450	15326	15360	25902	25902					0.10690847091268552
GYLFSHLID	9	Unmodified	_GYLFSHLID_					0	0	0			REV__ENSG00000130711|ENST00000253008|PRDM12	REV__ENSG00000130711|ENST00000253008|PRDM12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2885131835938	2	532.7742	1063.53385	-0.63892	-0.0003404	-4.1294	-0.0022	-4.7683	-0.0025404	532.7717590668472	85.661	0.74673	85.603	85.145	85.891	-0.057617					49	17	4	0	0	0	0.024381	1	10741	10741		29.15	11.682	1	288330	+		22279	23139	15327	15361	25903	25903					0.004620540689529662
GYLFTATIVL	10	Unmodified	_GYLFTATIVL_					0	0	0			REV__nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	REV__nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.3182983398438	2	549.3157	1096.61685	-0.14116	-7.7542E-05	4.1052	0.002255	3.964	0.0021775	549.3178899882961	99.835	0.49946	99.664	99.361	99.861	-0.17088					45	13	4	0	0	0	1.1267	1	12371	12371		29.15	0	1	420940	+		22280	22364	15328	15362	25904	25904					0.07240370796944262
GYLKALRIDAK	11	Unmodified	_GYLKALRIDAK_					0	0	0			REV__ENSG00000119929|ENST00000370476|CUTC	REV__ENSG00000119929|ENST00000370476|CUTC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.8790283203125	2	624.377155	1246.73976	0.70575	0.00044065	3.4838	0.0021752	4.1896	0.0026159	624.3791936410059	100.71	0.53059	100.58	100.28	100.81	-0.13364					27	14	2	0	0	0	1.0521	2	12491	12491;12497		24.519	0.99649	1	344240	+		22281	22501	15329	15363	25905;25906	25905					0.12625627248212368
GYLLLSVVQ	9	Unmodified	_GYLLLSVVQ_					0	0	0		SLC38A11|p.L114V|1|0.14|ENSG00000169507|chr2:164939479-164939479|A/C|missense_variant	SLC38A11|p.L114V|1|0.14|ENSG00000169507|chr2:164939479-164939479|A/C|missense_variant	SLC38A11|p.L114V|1|0.14|ENSG00000169507|chr2:164939479-164939479|A/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.29730224609375	2	496.294768	990.574983	0.044079	2.1876E-05	-0.76229	-0.00037832	-0.71821	-0.00035644	496.2944559003518	54.366	0.35461	54.218	53.987	54.341	-0.1478					21	9	3	0	0	0	0.024457	1	5925	5925		21.96	0	1	591660			22282	37889	15330	15364	25907	25907					0.07931815108440787
GYLLWEAL	8	Unmodified	_GYLLWEAL_					0	0	0		ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.76214599609375	2	482.760561	963.506569	0.59976	0.00028954	3.0527	0.0014737	3.6525	0.0017633	482.76186589010223	86.14	0.69636	85.998	85.711	86.407	-0.14217					46	15	4	0	0	0	0.58212	2	10475	10462;10475		77.944	17.65	1	674860			22283	8566	15331	15365	25908;25909	25909					0.023355705285666772
GYLSPDILL	9	Unmodified	_GYLSPDILL_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7812805175781	2	495.778951	989.543348	-0.54409	-0.00026975	3.7467	0.0018575	3.2026	0.0015878	495.7805879371351	90.44	4.2063	90.315	89.416	93.622	-0.12512					197	99	4	0	0	0	0.40179	1	11101	11101		65.803	7.9919	1	1284300			22284	767	15332	15366	25910	25910					0.04815822354487409
GYLVANGEL	9	Unmodified	_GYLVANGEL_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.24468994140625	2	468.245275	934.475997	0.20109	9.4162E-05	-1.2222	-0.00057229	-1.0211	-0.00047813	468.2445715077833	103.12	2.3598	103.12	102.32	104.68	0.0054245					123	59	5	0	0	0	0.72875	1	13184	13184		44.117	10.601	1	6608800	+		22285	19765	15333	15367	25911	25911					0.006137921435083626
GYLVANGEL	9	Unmodified	_GYLVANGEL_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.245361328125	2	468.245275	934.475997	0.84537	0.00039584	-1.803	-0.00084423	-0.9576	-0.00044839	468.2442937403857	103.2	1.893	103.19	102.28	104.18	-0.0046005					118	45	4	0	0	0	0.85329	1	13129	13129		35.618	4.0885	1	6166300	+		22286	19765	15333	15367	25912	25912					0.006137921435083626
GYLVANGEL	9	Unmodified	_GYLVANGEL_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.24395751953125	2	468.245275	934.475997	0.40243	0.00018843	-1.4974	-0.00070113	-1.0949	-0.0005127	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.85329	1	12846	12846		35.618	2.1027	1	4364500	+		22287	19765	15333	15367	25913	25913					0.006137921435083626
GYLVANGEL	9	Unmodified	_GYLVANGEL_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2450256347656	2	468.245275	934.475997	-0.18849	-8.8262E-05	-1.0016	-0.00046899	-1.1901	-0.00055725	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	0.72875	2	12892	12892;12949		44.117	3.5216	1	4433200	+		22288	19765	15333	15367	25914;25915	25914					0.006137921435083626
GYLVANGEL	9	Unmodified	_GYLVANGEL_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2449645996094	2	468.245275	934.475997	-0.11067	-5.1819E-05	-1.3018	-0.00060958	-1.4125	-0.0006614	468.2445766995356	100.87	1.8003	100.7	100.32	102.12	-0.17178					73	44	2	0	0	0	0.96322	1	12553	12553		27.882	3.3782	1	336910	+		22289	19765	15333	15367	25916	25916					0.006137921435083626
GYLVANGEL	9	Unmodified	_GYLVANGEL_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24493408203125	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	0.72875	3	12883	12883;12902;12950		44.117	13.613	1	4477100	+		22290	19765	15333	15367	25917;25918;25919	25917					0.006137921435083626
GYLVFHGCEL	10	Unmodified	_GYLVFHGCEL_					0	0	0			REV__ENST00000392621.5_1_17:72517922-72518024:-|nuORF	REV__ENST00000392621.5_1_17:72517922-72518024:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7498779296875	2	569.273509	1136.53247	0.35572	0.0002025	2.0826	0.0011855	2.4383	0.001388	569.2743177335373	51.096	0.53036	50.819	50.665	51.195	-0.27643					17	13	2	0	0	0	0.03519	1	5263	5263		27.882	7.4004	1	326230	+		22291	31615	15334	15368	25920	25920					-0.03033903291475326
GYLVIQRLLY	10	Unmodified	_GYLVIQRLLY_					0	0	0		ENST00000377449.1_9:69261316-69262487:-|nuORF	ENST00000377449.1_9:69261316-69262487:-|nuORF	ENST00000377449.1_9:69261316-69262487:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.3719482421875	2	619.368798	1236.72304	-0.1507	-9.3342E-05	3.5298	0.0021862	3.3791	0.0020929	619.370979083808	100.11	0.78519	100.11	99.704	100.49	0					55	19	4	0	0	0	1.1217	1	12824	12824		21.96	3.6978	1	1092500			22292	13206	15335	15369	25921	25921					0.11415126362271621
GYNESKILNEV	11	Unmodified	_GYNESKILNEV_					0	0	0			REV__nc|ENSG00000048991|Q15032|R3HDM1	REV__nc|ENSG00000048991|Q15032|R3HDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	633.3735961914062	2	633.322242	1264.62993	1.1758	0.00074463	4.2137	0.0026686	5.3894	0.0034133	633.3246585236244	97.204	0.84373	97.213	96.883	97.727	0.0089111					27	18	2	0	0	0	0.024786	1	12395	12395		51.528	22.358	1	46793	+		22293	20143	15336	15370	25922	25922					0.008201571184144996
GYNKYWCR	8	Unmodified	_GYNKYWCR_					0	0	0		ENSG00000186407|ENST00000392619|CD300E	ENSG00000186407|ENST00000392619|CD300E	ENSG00000186407|ENST00000392619|CD300E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.805908203125	2	545.250369	1088.48618	0.094688	5.1629E-05	-0.50096	-0.00027315	-0.40627	-0.00022152	545.2507120909668	72.265	1.2505	72.002	71.518	72.769	-0.26329					57	29	3	0	0	0	0.027866	1	8558	8558		42.474	0	1	126080			22294	9545	15337	15371	25923	25923					-0.05451923402893044
GYNVAAVN	8	Unmodified	_GYNVAAVN_					0	0	0		nc|ENSG00000142583|P22732-2|SLC2A5;ENSG00000142583|ENST00000377424|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2323913574219	2	404.20341	806.392267	0.99264	0.00040123	-3.8376	-0.0015512	-2.845	-0.0011499	404.2019381330494	82.016	0.51033	81.823	81.634	82.144	-0.19334					17	11	2	0	0	0	0.027866	1	9857	9857		24.203	4.8428	1	74954			22295	5571	15338	15372	25924	25924					-0.018673192335313615
GYPFDKTGVNL	11	Unmodified	_GYPFDKTGVNL_					0	0	0			REV__CHRD|p.D512Y|1|0.18|ENSG00000090539|chr3:184384630-184384630|G/T|missense_variant	REV__CHRD|p.D512Y|1|0.18|ENSG00000090539|chr3:184384630-184384630|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.58941650390625	3	404.208273	1209.60299	1.3034	0.00052685	-2.5122	-0.0010154	-1.2088	-0.0004886	404.2072668856093	40.268	0.57093	40.291	40.126	40.696	0.023006					23	15	2	0	0	0	0.024735	1	3482	3482		34.087	8.9605	1	191940	+		22296	19477	15339	15373	25925	25925					0.00657093297877509
GYPGPPGPRGL	11	Unmodified	_GYPGPPGPRGL_					0	0	0		ENSG00000049089|ENST00000372748|COL9A2;ENST00000427563.1_1_1:40768460-40770015:-|nuORF;ENST00000482722.5_1_1:40766856-40777859:-|nuORF	ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2838745117188	2	534.285266	1066.55598	0.14511	7.7529E-05	-1.8214	-0.00097313	-1.6763	-0.0008956	534.2843186877622	106.34	0.98719	106.18	105.77	106.76	-0.16132					86	45	3	0	0	0	1.0292	1	13211	13211		30.318	3.6248	1	230390			22297	1123	15340	15374	25926	25926					0.025362785373772567
GYPLRKNVL	9	Unmodified	_GYPLRKNVL_					0	0	0			REV__ENSG00000256525|ENST00000539111|POLG2	REV__ENSG00000256525|ENST00000539111|POLG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2672729492188	2	530.319109	1058.62366	-0.11233	-5.9569E-05	-4.2223	-0.0022391	-4.3346	-0.0022987	530.3167562219323	20.491	0.58919	20.324	20.002	20.591	-0.16774					26	11	4	0	0	0	0.024487	1	559	559		24.203	6.8378	1	202530	+		22298	29081	15341	15375	25927	25927					0.09669728468179528
GYPPFSEHR	9	Unmodified	_GYPPFSEHR_					0	0	0		nc|ENSG00000183765|O96017-11|CHEK2;nc|ENSG00000183765|O96017-13|CHEK2;nc|ENSG00000183765|O96017-4|CHEK2;CHEK2|p.L498Pfs*9|1|0.12|ENSG00000183765|chr22:28689150-28689184|GGGTAGAGCTGTGGATTCATTTTCCTCAGACAGAA/-|frameshift_variant;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	nc|ENSG00000183765|O96017-11|CHEK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3165283203125	2	545.259248	1088.50394	-0.28244	-0.000154	-3.6528	-0.0019917	-3.9353	-0.0021458	545.2578456484783	90.044	0.339	89.905	89.619	89.958	-0.13824					9	7	2	0	0	0	0.024457	1	10968	10968		37.159	0	1	19799			22299	265	15342	15376	25928	25928					-0.03676884876381337
GYPPLTKIL	9	Unmodified	_GYPPLTKIL_					0	0	0		nc|ENSG00000286112|Q16773-3|KYAT1;ENST00000462722.5_1_9:131598322-131644289:-|nuORF;ENSG00000171097|ENST00000302586|KYAT1	nc|ENSG00000286112|Q16773-3|KYAT1	nc|ENSG00000286112|Q16773-3|KYAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2903137207031	2	501.305136	1000.59572	0.69569	0.00034875	-2.1677	-0.0010867	-1.472	-0.00073791	501.30413480251275	83.498	0.5597	83.286	82.876	83.436	-0.21159					17	12	2	0	0	0	0.024466	1	10046	10046		31.53	17.393	1	60354			22300	8109	15343	15377	25929	25929					0.09544405488077246
GYPPLTKIL	9	Unmodified	_GYPPLTKIL_					0	0	0		nc|ENSG00000286112|Q16773-3|KYAT1;ENST00000462722.5_1_9:131598322-131644289:-|nuORF;ENSG00000171097|ENST00000302586|KYAT1	nc|ENSG00000286112|Q16773-3|KYAT1	nc|ENSG00000286112|Q16773-3|KYAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2904052734375	2	501.305136	1000.59572	0.49167	0.00024648	1.2932	0.00064826	1.7848	0.00089474	501.3060933861948	84.974	0.37485	84.771	84.544	84.919	-0.20329					12	8	2	0	0	0	0.024405	1	10292	10292		35.618	3.6634	1	57676			22301	8109	15343	15377	25930	25930					0.09544405488077246
GYQERDLFN	9	Unmodified	_GYQERDLFN_					0	0	0			REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.307861328125	2	571.26727	1140.51999	0.30113	0.00017203	-0.46312	-0.00026457	-0.16199	-9.254E-05	571.2664911036998	81.289	0.41257	81.06	80.776	81.188	-0.2289					13	9	2	0	0	0	0.024541	1	9743	9743		23.042	0	1	85933	+		22302	19712	15344	15378	25931	25931					-0.04465223430156584
GYQERDLFN	9	Unmodified	_GYQERDLFN_					0	0	0			REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	571.26727	1140.51999	-1.2247	-0.00069963	0.05005	2.8592E-05	-1.1746	-0.00067103	571.2669306831328	81.22	0.59481	81.22	80.746	81.341	0	0.12158	0.0011498	NaN	23.042	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100440	+		22303	19712	15344	15378							-0.04465223430156584
GYQERDLFN	9	Unmodified	_GYQERDLFN_					0	0	0			REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.26727	1140.51999	-0.87975	-0.00050257	-1.5978	-0.00091274	-2.4775	-0.0014153	571.2661391302702	81.148	0.478	81.017	80.82	81.298	-0.13075	-0.080745	-0.00073285	NaN	23.042	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79750	+		22304	19712	15344	15378							-0.04465223430156584
GYQERDLFN	9	Unmodified	_GYQERDLFN_					0	0	0			REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	571.26727	1140.51999	-1.4331	-0.0008187	-0.90942	-0.00051952	-2.3425	-0.0013382	571.2664655447059	81.071	0.52092	81.095	80.89	81.411	0.023903	-0.0027249	5.3597E-05	NaN	23.042	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78236	+		22305	19712	15344	15378							-0.04465223430156584
GYQIRLESV	9	Unmodified	_GYQIRLESV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2872314453125	2	532.790381	1063.56621	0.014552	7.7532E-06	-2.3919	-0.0012744	-2.3774	-0.0012666	532.7891021941645	71.843	0.8846	71.568	71.314	72.198	-0.27509					35	21	2	0	0	0	0.0242	1	8381	8381		69.628	3.1983	1	1517100			22306	7048	15345	15379	25932	25932					0.036968414719467546
GYQIRLESV	9	Unmodified	_GYQIRLESV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.790381	1063.56621	0.064307	3.4262E-05	-9.8081	-0.0052257	-9.7438	-0.0051914	532.7839588117679	71.753	0.18581	71.464	71.351	71.537	-0.28858	-0.051854	-0.007578	NaN	69.628	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38449			22307	7048	15345	15379							0.036968414719467546
GYRGKKRLEA	10	Unmodified	_GYRGKKRLEA_					0	0	0		MYH3|p.Q149L|1|0.31|ENSG00000109063|chr17:10651571-10651571|T/A|missense_variant	MYH3|p.Q149L|1|0.31|ENSG00000109063|chr17:10651571-10651571|T/A|missense_variant	MYH3|p.Q149L|1|0.31|ENSG00000109063|chr17:10651571-10651571|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3428344726562	2	589.343646	1176.67274	-1.6043	-0.00094547	0.20595	0.00012138	-1.3983	-0.0008241	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0992	1	11640	11640		32.812	1.2826	1	12648000			22308	18006	15346	15380	25933	25933					0.09147016757151505
GYRGKKRLEA	10	Unmodified	_GYRGKKRLEA_					0	0	0		MYH3|p.Q149L|1|0.31|ENSG00000109063|chr17:10651571-10651571|T/A|missense_variant	MYH3|p.Q149L|1|0.31|ENSG00000109063|chr17:10651571-10651571|T/A|missense_variant	MYH3|p.Q149L|1|0.31|ENSG00000109063|chr17:10651571-10651571|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3436279296875	2	589.343646	1176.67274	0.92698	0.00054631	-2.8783	-0.0016963	-1.9514	-0.00115	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0992	1	11509	11509		32.812	4.7309	1	4746700			22309	18006	15346	15380	25934	25934					0.09147016757151505
GYRHKYIY	8	Unmodified	_GYRHKYIY_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8095092773438	2	550.287808	1098.56106	-0.96502	-0.00053104	3.3096	0.0018212	2.3446	0.0012902	550.2893060217903	60.862	1.0512	60.686	60.362	61.413	-0.1761					55	25	3	0	0	0	0.027866	1	6776	6776		28.254	4.0515	1	369680			22310	2272	15347	15381	25935	25935					0.01572582400012834
GYRITLIDIG	10	Unmodified	_GYRITLIDIG_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2701416015625	2	560.821681	1119.62881	-0.30238	-0.00016958	2.7439	0.0015389	2.4416	0.0013693	560.8230714870375	26.718	0.6265	26.55	26.224	26.851	-0.16816					24	14	2	0	0	0	0.03519	1	1413	1413		29.17	2.4771	1	45424			22311	3722	15348	15382	25936	25936					0.07377987540144204
GYRMKFACYY	10	Unmodified	_GYRMKFACYY_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000496560.1_1_6:32001776-32002287:+|nuORF;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.7765197753906	3	434.531705	1300.57328	-0.3101	-0.00013475	-0.77607	-0.00033723	-1.0862	-0.00047198	434.86553058878513	30.906	0.70835	30.665	30.166	30.875	-0.24109					22	16	2	0	0	0	0.03519	1	1976	1976		17.468	0.75062	1	125260			22312	10648	15349	15383	25937	25937					-0.06497885243493329
GYRTVLLRR	9	Unmodified	_GYRTVLLRR_					0	0	0			REV__PPIG|p.S329Y|1|0.2|ENSG00000138398|chr2:169633216-169633216|C/A|missense_variant	REV__PPIG|p.S329Y|1|0.2|ENSG00000138398|chr2:169633216-169633216|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.348732	1132.68291	-0.52575	-0.00029828	-4.4332	-0.0025152	-4.9589	-0.0028134	567.3460137161104	90.858	0.12337	90.733	90.629	90.753	-0.12512					4	2	2	0	0	0	0.024541	1	11127	11127		16.473	0	1	133530	+		22313	37395	15350	15384	25938	25938					0.1218762448236248
GYSAKVVLLLG	11	Unmodified	_GYSAKVVLLLG_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.339599609375	2	560.342249	1118.66995	-0.38796	-0.00021739	-3.4302	-0.0019221	-3.8182	-0.0021395	560.3401809188904	101.1	1.8443	101.11	100.79	102.63	0.0090256					135	42	6	0	0	0	1.0292	1	12872	12872		30.318	1.1682	1	14349000	+		22314	22456	15351	15385	25939	25939					0.11535748579603933
GYSFSPKDVS	10	Unmodified	_GYSFSPKDVS_					0	0	0		ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.31640625	2	543.758746	1085.50294	-0.32801	-0.00017836	1.7093	0.00092944	1.3813	0.00075108	543.7596625960383	49.627	1.6632	49.522	48.502	50.165	-0.10558					61	43	2	0	0	0	0.03519	1	4915	4915		27.882	6.1799	1	686590			22315	2028	15352	15386	25940	25940					-0.03639144035946629
GYSHSVKRGV	10	Unmodified	_GYSHSVKRGV_					0	0	0			REV__ENSG00000140564|ENST00000268171|FURIN	REV__ENSG00000140564|ENST00000268171|FURIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.293622	1088.57269	-0.53269	-0.00029047	-1.3367	-0.00072891	-1.8694	-0.0010194	545.2918257409617	89.81	0.8487	89.682	88.997	89.846	-0.12774					29	19	3	0	0	0	0.03519	1	10983	10983		64.207	32.677	1	93205	+		22316	24031	15353	15387	25941	25941					0.03194779423347427
GYSKILPSLIS	11	Unmodified	_GYSKILPSLIS_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3431396484375	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	0.99553	1	11780	11780		37.812	2.1932	1	12648000			22317	6992	15354	15388	25942	25942					0.09415427371459373
GYSKILPSLIS	11	Unmodified	_GYSKILPSLIS_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3433837890625	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0344	1	11709	11709		29.17	1.0886	1	13724000			22318	6992	15354	15388	25943	25943					0.09415427371459373
GYSVSRSN	8	Unmodified	_GYSVSRSN_					0	0	0		nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.21087646484375	2	435.209224	868.403895	1.0696	0.00046548	0.54537	0.00023735	1.6149	0.00070283	435.2088547080744	99.031	1.6894	98.906	98.028	99.717	-0.12459					80	42	3	0	0	0	1.0009	1	12297	12297		37.159	2.9866	1	206790			22319	18694	15355	15389	25944	25944					-0.035571222101793865
GYTITLWDL	9	Unmodified	_GYTITLWDL_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2967529296875	2	541.281857	1080.54916	0.35883	0.00019423	0.37249	0.00020162	0.73132	0.00039585	541.2817698074152	98.676	0.62299	98.54	98.147	98.77	-0.13625					18	13	2	0	0	0	0.024381	1	12209	12209		37.159	0	1	107310			22320	2546	15356	15390	25945	25945					0.012109208661513549
GYTLLSSFSA	10	Unmodified	_GYTLLSSFSA_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2978515625	2	523.263665	1044.51278	-0.24492	-0.00012816	-2.6006	-0.0013608	-2.8455	-0.001489	523.2618242326503	86.828	0.42255	86.828	86.561	86.984	0					10	9	2	0	0	0	0.03519	1	10922	10922		35.618	6.4687	1	28279	+		22321	20941	15357	15391	25946	25946					-0.0076995603058094275
GYTMEQSHP	9	Unmodified	_GYTMEQSHP_					0	0	0		ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2882690429688	2	525.221474	1048.42839	-0.31655	-0.00016626	-0.42226	-0.00022178	-0.73881	-0.00038804	525.2211660620886	28.059	0.71141	27.907	27.689	28.401	-0.15195					47	17	4	0	0	0	0.024427	1	1647	1647		42.396	0	1	1167600			22322	7019	15358	15392	25947	25947					-0.09388230118997853
GYTNRTGAVY	10	Unmodified	_GYTNRTGAVY_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000570989.1_1_17:48141381-48141648:+|nuORF;ENST00000508100.1_1_17:48133863-48142148:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.7456665039062	2	551.269813	1100.52507	-0.47496	-0.00026183	0.69436	0.00038278	0.21941	0.00012095	551.2703030931829	39.517	0.2358	39.294	39.186	39.422	-0.22311					7	5	2	0	0	0	0.03519	1	3360	3360		19.104	6.8967	1	74067			22323	777	15359	15393	25948	25948					-0.021169195675156516
GYVALDALN	9	Unmodified	_GYVALDALN_					0	0	0			REV__ENST00000496594.5_1_9:130883426-130884979:-|nuORF	REV__ENST00000496594.5_1_9:130883426-130884979:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.24462890625	2	468.245275	934.475997	-0.18849	-8.8262E-05	-1.0016	-0.00046899	-1.1901	-0.00055725	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	0.85329	1	12901	12901		35.618	0	1	4433200	+		22324	24606	15360	15394	25949	25949					0.00613792143496994
GYVALDALN	9	Unmodified	_GYVALDALN_					0	0	0			REV__ENST00000496594.5_1_9:130883426-130884979:-|nuORF	REV__ENST00000496594.5_1_9:130883426-130884979:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2446594238281	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	0.83071	1	12927	12927		37.159	0	1	4477100	+		22325	24606	15360	15394	25950	25950					0.00613792143496994
GYVIEWGLG	9	Unmodified	_GYVIEWGLG_					0	0	0		nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;ENST00000480825.6_1_1:36934562-36937301:-|nuORF;ENST00000487540.6_1_1:36933583-36937977:-|nuORF;ENST00000464365.2_1_1:36934562-36941005:-|nuORF	nc|ENSG00000119535|Q99062-2|CSF3R	nc|ENSG00000119535|Q99062-2|CSF3R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.73797607421875	2	497.255643	992.496732	0.39726	0.00019754	-3.4644	-0.0017227	-3.0671	-0.0015251	497.25440191048204	59.188	0.71494	58.946	58.381	59.096	-0.24166					28	17	3	0	0	0	0.024517	1	6458	6458		19.36	0	1	328290			22326	3744	15361	15395	25951	25951					0.00018382523182935984
GYVKVQVKK	9	Unmodified	_GYVKVQVKK_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.82666015625	2	524.829309	1047.64407	-0.67594	-0.00035475	-3.8331	-0.0020117	-4.509	-0.0023665	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	0.98128	1	12562	12562		24.203	1.1603	1	14120000			22327	5315	15362	15396	25952	25952					0.12214899127980061
GYVLGGQLLTI	11	Unmodified	_GYVLGGQLLTI_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.32958984375	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.95664	1	11624	11624		46.457	0.48454	1	14057000			22328	8429	15363	15397	25953	25953					0.0881915819995811
GYVLGGQLLTI	11	Unmodified	_GYVLGGQLLTI_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0344	1	11201	11201		29.17	2.4771	1	4116000			22329	8429	15363	15397	25954	25954					0.0881915819995811
GYVLGGQLLTI	11	Unmodified	_GYVLGGQLLTI_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3294067382812	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.98542	1	11189	11189		40.058	8.1033	1	4134200			22330	8429	15363	15397	25955	25955					0.0881915819995811
GYVLGGQLLTI	11	Unmodified	_GYVLGGQLLTI_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3296508789062	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.013	2	11199	11199;11259		33.922	3.418	1	19210000			22331	8429	15363	15397	25956;25957	25956					0.0881915819995811
GYVPWFPLL	9	Unmodified	_GYVPWFPLL_					0	0	0			REV__ENST00000446916.2_1_20:3564623-3565297:+|nuORF	REV__ENST00000446916.2_1_20:3564623-3565297:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2782592773438	2	546.299853	1090.58515	-1.714	-0.00093638	-1.0241	-0.00055948	-2.7382	-0.0014959	546.2993940340689	29.094	0.56446	29.094	28.696	29.26	0					19	13	2	0	0	0	0.024475	1	1752	1752		21.702	0	1	94813	+		22332	32637	15364	15398	25958	25958					0.0434842283366379
GYYLSVVT	8	Unmodified	_GYYLSVVT_					0	0	0			REV__ENSG00000172146|ENST00000641732|OR1A1	REV__ENSG00000172146|ENST00000641732|OR1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.25079345703125	2	451.236919	900.459284	-0.40228	-0.00018152	1.1862	0.00053525	0.78391	0.00035373	451.2372040690436	35.334	0.47887	35.334	35.129	35.608	0					21	12	2	0	0	0	0.027866	1	2743	2743		19.36	0	1	385700	+		22333	26637	15365	15399	25959	25959					0.005072912575769806
HAADLEKKQNE	11	Unmodified	_HAADLEKKQNE_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000467056.5_1_3:4536161-4687445:+|nuORF	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2198181152344	3	428.217719	1281.63133	0.16465	7.0506E-05	3.8815	0.0016621	4.0462	0.0017326	428.2193814912294	27.528	1.4615	27.371	27.104	28.565	-0.15664					84	35	5	0	0	0	1.0371	1	1504	1504		28.577	0.49524	1	2370900			22334	6165	15366	15400	25960	25960					0.0017779120717023034
HAAEQAKKASS	11	Unmodified	_HAAEQAKKASS_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.792724609375	2	564.293819	1126.57309	0.39799	0.00022458	1.7244	0.00097305	2.1224	0.0011976	564.295521445649	74.307	0.70178	74.125	73.771	74.473	-0.18279					32	17	4	0	0	0	0.024797	1	8748	8748		63.534	0.22758	1	542220			22335	2238	15367	15401	25961	25961					0.014861543525057641
HAAGTRPL	8	Unmodified	_HAAGTRPL_					0	0	0			REV__ENST00000376499.7_2_9:84303366-84303945:-|nuORF	REV__ENST00000376499.7_2_9:84303366-84303945:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.755615234375	2	411.732669	821.450785	-0.81495	-0.00033554	-0.94742	-0.00039008	-1.7624	-0.00072562	411.73201257795034	37.595	0.3558	37.385	37.153	37.509	-0.2092					11	8	2	0	0	0	0.027866	1	3033	3033		21.702	1.2205	1	57799	+		22336	31355	15368	15402	25962	25962					0.03291782131623222
HAAIPLKA	8	Unmodified	_HAAIPLKA_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENST00000519868.1_1_5:169507112-169507319:+|nuORF;ENST00000520450.5_1_5:169484535-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.7555236816406	2	410.755613	819.496673	0.063841	2.6223E-05	0.15323	6.2941E-05	0.21707	8.9164E-05	410.755524051751	37.643	0.71024	37.45	37.152	37.862	-0.193					42	18	4	0	0	0	1.0572	2	3036	3036;3049		28.254	6.5519	1	2148100			22337	4804	15369	15403	25963;25964	25963					0.0797042731384181
HAATTSLSW	9	Unmodified	_HAATTSLSW_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2402648925781	2	487.240524	972.466495	-0.26156	-0.00012744	-0.42787	-0.00020847	-0.68943	-0.00033592	487.2404496908351	47.876	0.66047	47.6	47.268	47.928	-0.27598					62	17	5	0	0	0	0.4855	1	4705	4705		60.294	6.9425	1	3566000			22338	2235	15370	15404	25965	25965					-0.020839761420006653
HAAVPGGGFL	10	Unmodified	_HAAVPGGGFL_					0	0	0		ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.25164794921875	2	463.248152	924.481751	-0.36719	-0.0001701	3.5433	0.0016414	3.1761	0.0014713	463.24944509714913	30.214	0.38486	29.97	29.779	30.163	-0.24415					15	8	2	0	0	0	1.0111	1	1915	1915		44.531	5.5096	1	403090			22339	14716	15371	15405	25966	25966					0.016489354458599337
HAAVPGGGFL	10	Unmodified	_HAAVPGGGFL_					0	0	0		ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.248152	924.481751	-1.332	-0.00061704	-2.7197	-0.0012599	-4.0517	-0.0018769	463.24677672037325	29.897	0.44476	29.897	29.652	30.096	0	0.066438	-9.4391E-06	NaN	44.531	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121880			22340	14716	15371	15405							0.016489354458599337
HAAVPGGGFL	10	Unmodified	_HAAVPGGGFL_					0	0	0		ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.248152	924.481751	-0.51423	-0.00023822	-4.9351	-0.0022862	-5.4493	-0.0025244	463.24569502413556	29.829	0.60822	29.837	29.597	30.205	0.0086708	0.006856	-0.002062	NaN	44.531	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100880			22341	14716	15371	15405							0.016489354458599337
HAAVPGGGFL	10	Unmodified	_HAAVPGGGFL_					0	0	0		ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	ENST00000462743.1_1_10:100179808-100179943:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	463.248152	924.481751	-0.16276	-7.5397E-05	-3.7281	-0.0017271	-3.8909	-0.0018025	463.24617029487405	29.539	0.39452	29.617	29.368	29.763	0.078346	-0.21308	-0.00094378	NaN	44.531	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135860			22342	14716	15371	15405							0.016489354458599337
HACDTWAVI	9	Unmodified	_HACDTWAVI_					0	0	0		ENST00000571043.5_1_17:5329514-5335888:+|nuORF;nc|ENSG00000129197|Q86UA6-2|RPAIN	ENST00000571043.5_1_17:5329514-5335888:+|nuORF	ENST00000571043.5_1_17:5329514-5335888:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2929382324219	2	508.236927	1014.4593	-0.15859	-8.0602E-05	-0.51441	-0.00026144	-0.673	-0.00034204	508.2368837491468	50.478	0.16592	50.559	50.41	50.576	0.08099					6	4	2	0	0	0	0.024412	1	5212	5212		31.955	2.8053	1	150110			22343	17032	15372	15406	25967	25967					-0.04735032014082208
HACLTKAL	8	Unmodified	_HACLTKAL_					0	0	0		ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.73736572265625	2	428.739105	855.463658	0.020439	8.7632E-06	-3.0818	-0.0013213	-3.0613	-0.0013125	428.7375473924812	23.444	0.93523	23.264	23.067	24.002	-0.17989					48	21	3	0	0	0	0.96719	1	925	925		42.474	3.453	1	1116000			22344	11964	15373	15407	25968	25968					0.030144771994969233
HACLTKAL	8	Unmodified	_HACLTKAL_					0	0	0		ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	428.739105	855.463658	0.61925	0.0002655	-3.9692	-0.0017017	-3.3499	-0.0014362	428.7372807423327	23.463	1.2164	23.261	23.014	24.231	-0.20193	0.0083743	0.0006352	NaN	42.474	47	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614750			22345	11964	15373	15407							0.030144771994969233
HACLTKAL	8	Unmodified	_HACLTKAL_					0	0	0		ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	ENST00000302926.6_1_17:7322009-7322306:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	428.739105	855.463658	2.1313	0.00091377	-5.5631	-0.0023851	-3.4318	-0.0014713	428.73661906079604	23.424	1.1532	23.233	23.034	24.187	-0.19117	-0.019699	-0.00073156	NaN	42.474	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1283500			22346	11964	15373	15407							0.030144771994969233
HACVFFKT	8	Unmodified	_HACVFFKT_					0	0	0		ENST00000474223.1_1_X:23803122-23803970:+|nuORF	ENST00000474223.1_1_X:23803122-23803970:+|nuORF	ENST00000474223.1_1_X:23803122-23803970:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7824401855469	2	476.739105	951.463658	0.9756	0.00046511	1.3138	0.00062636	2.2894	0.0010915	476.7399016001093	41.161	0.5256	41.161	40.835	41.36	0					21	14	2	0	0	0	0.027866	1	3634	3634		35.201	0	1	107030			22347	15026	15374	15408	25969	25969					-0.014015228005064273
HADPEALWAL	10	Unmodified	_HADPEALWAL_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2929077148438	2	561.782556	1121.55056	-0.53327	-0.00029958	-3.6434	-0.0020468	-4.1767	-0.0023464	561.7803526342079	82.783	0.94852	82.643	82.39	83.339	-0.14014					33	21	2	0	0	0	0.03519	1	9955	9955		27.882	0	1	525450	+		22348	23034	15375	15409	25970	25970					-0.005354450451250159
HADSKPAPLTP	11	Unmodified	_HADSKPAPLTP_					0	0	0		nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	nc|ENSG00000102606|Q14155-6|ARHGEF7	nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.30078125	2	567.301113	1132.58767	-0.64094	-0.00036361	-0.19553	-0.00011093	-0.83648	-0.00047453	567.3009110810915	38.767	0.73647	38.669	38.318	39.054	-0.098755					59	19	4	0	0	0	0.51994	1	3269	3269		75.043	3.1658	1	2521800			22349	2419	15376	15410	25971	25971					0.026682265006456873
HADSKPAPLTP	11	Unmodified	_HADSKPAPLTP_					0	0	0		nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	nc|ENSG00000102606|Q14155-6|ARHGEF7	nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3004150390625	2	567.301113	1132.58767	-1.8515	-0.0010503	0.82225	0.00046646	-1.0292	-0.00058387	567.3014729519612	39.006	0.77274	39.03	38.648	39.421	0.023727					55	20	4	0	0	0	0.51994	1	3254	3254		75.043	2.1641	1	2340200			22350	2419	15376	15410	25972	25972					0.026682265006456873
HADSKPAPLTP	11	Unmodified	_HADSKPAPLTP_					0	0	0		nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	nc|ENSG00000102606|Q14155-6|ARHGEF7	nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.301113	1132.58767	-1.0961	-0.00062179	0.21362	0.00012119	-0.88243	-0.0005006	567.3011317654946	38.801	0.67451	38.801	38.473	39.148	0	-0.032048	7.6219E-06	NaN	75.043	52	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2316400			22351	2419	15376	15410							0.026682265006456873
HAETYAEY	8	Unmodified	_HAETYAEY_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.21063232421875	2	492.208889	982.403226	0.094728	4.6626E-05	3.517	0.0017311	3.6118	0.0017777	492.2104926636556	49.695	0.98178	49.415	49.049	50.031	-0.27977					59	25	4	0	0	0	0.95417	1	4984	4984		44.531	2.0566	1	4618300			22352	5360	15377	15411	25973	25973					-0.08867961649912104
HAFDGFEVNW	10	Unmodified	_HAFDGFEVNW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.2709350585938	2	611.269813	1220.52507	-0.1703	-0.0001041	0.19155	0.00011709	0.021246	1.2987E-05	611.2697228573829	76.474	0.99809	76.222	75.905	76.903	-0.25162					56	23	4	0	0	0	0.56936	1	9087	9087		80.455	27.518	1	922630			22353	3730	15378	15412	25974	25974					-0.07636919567516998
HAFDGFEVNW	10	Unmodified	_HAFDGFEVNW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	611.269813	1220.52507	-1.2286	-0.00075099	1.1148	0.00068146	-0.11375	-6.9534E-05	611.270372375386	76.541	0.91916	76.273	75.928	76.848	-0.26806	0.075963	0.0005627	NaN	80.455	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	925610			22354	3730	15378	15412							-0.07636919567516998
HAFDGFEVNW	10	Unmodified	_HAFDGFEVNW_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	611.269813	1220.52507	-0.32921	-0.00020123	0.42204	0.00025798	0.092838	5.6749E-05	611.2699121181547	76.264	1.0026	76.096	75.816	76.818	-0.16854	-0.10109	-0.00028426	NaN	80.455	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	949080			22355	3730	15378	15412							-0.07636919567516998
HAFVHVRYGK	10	Unmodified	_HAFVHVRYGK_					0	0	0		ENST00000605573.1_1_3:187871072-187871573:-|nuORF	ENST00000605573.1_1_3:187871072-187871573:-|nuORF	ENST00000605573.1_1_3:187871072-187871573:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.5708923339844	3	405.22448	1212.65161	0.97649	0.0003957	4.1989	0.0017015	5.1753	0.0020972	405.22609376353427	30.241	0.70477	30.315	29.962	30.667	0.074314					40	16	4	0	0	0	0.03519	1	1824	1824		20.03	0.7678	1	451210			22356	17556	15379	15413	25975	25975					0.053790514482670915
HAGLVVRV	8	Unmodified	_HAGLVVRV_					0	0	0			REV__ENSG00000197561|ENST00000263621|ELANE	REV__ENSG00000197561|ENST00000263621|ELANE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.2387390136719	2	425.766512	849.518471	-0.13507	-5.7509E-05	0.21468	9.1402E-05	0.079607	3.3894E-05	425.76638407558903	22.018	0.57122	21.827	21.613	22.184	-0.19072					30	11	3	0	0	0	0.027866	1	743	743		37.028	10.232	1	339300	+		22357	28317	15380	15414	25976	25976					0.08769232062422816
HAGPIRVV	8	Unmodified	_HAGPIRVV_					0	0	0		ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.7585754394531	2	424.758687	847.502821	-0.85891	-0.00036483	1.0278	0.00043656	0.16887	7.1728E-05	424.759001466713	31.656	0.83748	31.656	31.386	32.224	0					45	20	3	0	0	0	0.96719	1	2132	2132		42.474	20.772	1	1379300			22358	10979	15381	15415	25977	25977					0.07296945545363087
HAGPIRVV	8	Unmodified	_HAGPIRVV_					0	0	0		ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.7586669921875	2	424.758687	847.502821	0.075931	3.2253E-05	0.28621	0.00012157	0.36214	0.00015382	424.75866134362496	31.604	1.3287	31.419	31.136	32.464	-0.18503					57	31	3	0	0	0	0.88442	1	2124	2124		52.299	24.045	1	1665700			22359	10979	15381	15415	25978	25978					0.07296945545363087
HAGPIRVV	8	Unmodified	_HAGPIRVV_					0	0	0		ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.7581787109375	2	424.758687	847.502821	-0.11744	-4.9885E-05	0.45652	0.00019391	0.33908	0.00014403	424.75875339324347	31.707	1.0573	31.555	31.232	32.289	-0.15236					58	25	4	0	0	0	1.0017	2	2122	2111;2122		37.028	11.578	1	1771000			22360	10979	15381	15415	25979;25980	25980					0.07296945545363087
HAGPIRVV	8	Unmodified	_HAGPIRVV_					0	0	0		ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	424.758687	847.502821	-0.388	-0.00016481	0.62467	0.00026533	0.23667	0.00010053	424.75878540190723	31.629	0.95887	31.641	31.34	32.299	0.011797	0.10476	0.00014954	NaN	52.299	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1365500			22361	10979	15381	15415							0.07296945545363087
HAGPIRVV	8	Unmodified	_HAGPIRVV_					0	0	0		ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1;ENST00000441280.7_1_17:41108193-41116457:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	424.758687	847.502821	-0.046973	-1.9952E-05	0.10699	4.5446E-05	0.06002	2.5494E-05	424.7585877304965	31.438	1.1103	31.507	31.248	32.359	0.068962	-0.02849	-0.00029024	NaN	52.299	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1250700			22362	10979	15381	15415							0.07296945545363087
HAHNSPVK	8	Unmodified	_HAHNSPVK_					0	0	0		nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant	nc|ENSG00000104728|O15013-7|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.24542236328125	2	445.235576	888.456599	-0.11334	-5.0461E-05	-3.2847	-0.0014625	-3.398	-0.0015129	445.2340907706151	102.91	1.019	102.78	102.23	103.25	-0.12784					36	23	3	0	0	0	0.027866	1	12798	12798		38.806	12.113	1	3775700			22363	2591	15382	15416	25981	25981					0.007908806432737947
HAIPLRSSW	9	Unmodified	_HAIPLRSSW_					0	0	0		ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000111664|P16520-2|GNB3;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4	ENSG00000172354|ENST00000303210|GNB2	ENSG00000172354|ENST00000303210|GNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7922973632812	2	533.793258	1065.57196	-1.0908	-0.00058227	-0.27758	-0.00014817	-1.3684	-0.00073044	533.7932958382165	44.361	1.0464	44.257	43.96	45.007	-0.10468					86	27	4	0	0	0	0.31037	1	4138	4138		74.255	10.048	1	14632000			22364	8266	15383	15417	25982	25982					0.04179984774305012
HAIPLRSSW	9	Unmodified	_HAIPLRSSW_					0	0	0		ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000111664|P16520-2|GNB3;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4	ENSG00000172354|ENST00000303210|GNB2	ENSG00000172354|ENST00000303210|GNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.792236328125	2	533.793258	1065.57196	-1.2272	-0.00065507	-0.090972	-4.856E-05	-1.3182	-0.00070363	533.793390620758	44.551	1.0891	44.307	44.01	45.099	-0.2444					89	28	4	0	0	0	0.31037	1	4186	4186		74.255	13.283	1	16015000			22365	8266	15383	15417	25983	25983					0.04179984774305012
HAIPLRSSW	9	Unmodified	_HAIPLRSSW_					0	0	0		ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000111664|P16520-2|GNB3;GNB2|p.K301Afs*14|1|0.22|ENSG00000172354|chr7:100678598-100678601|GAAG/-|frameshift_variant;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4	ENSG00000172354|ENST00000303210|GNB2	ENSG00000172354|ENST00000303210|GNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7923583984375	2	533.793258	1065.57196	-1.3264	-0.00070805	-0.017498	-9.3401E-06	-1.3439	-0.00071739	533.7934082322464	44.539	1.3348	44.324	44.01	45.345	-0.21505					100	36	4	0	0	0	0.31037	2	4186	4161;4186		74.255	13.283	1	16249000			22366	8266	15383	15417	25984;25985	25985					0.04179984774305012
HAIWARLEA	9	Unmodified	_HAIWARLEA_					0	0	0			REV__ENSG00000142552|ENST00000270645|RCN3	REV__ENSG00000142552|ENST00000270645|RCN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7928466796875	2	533.793258	1065.57196	-1.3264	-0.00070805	-0.017498	-9.3401E-06	-1.3439	-0.00071739	533.7934082322464	44.539	1.3348	44.324	44.01	45.345	-0.21505					100	36	4	0	0	0	0.33245	1	4149	4149		71.296	0	1	16249000	+		22367	24163	15384	15418	25986	25986					0.04179984774282275
HAKLKSILLKL	11	Unmodified	_HAKLKSILLKL_					0	0	0			REV__ENSG00000065325|ENST00000262441|GLP2R	REV__ENSG00000065325|ENST00000262441|GLP2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	632.4318237304688	2	632.42919	1262.84383	-0.71823	-0.00045423	1.9157	0.0012116	1.1975	0.00075734	632.4300906397543	107.49	0.12125	107.37	107.3	107.42	-0.1238					9	4	3	0	0	0	1.0521	1	13367	13367		24.519	1.9395	1	1340400	+		22368	20306	15385	15419	25987	25987					0.2229195407574025
HAKLKSILLKL	11	Unmodified	_HAKLKSILLKL_					0	0	0			REV__ENSG00000065325|ENST00000262441|GLP2R	REV__ENSG00000065325|ENST00000262441|GLP2R	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	632.42919	1262.84383	-0.71823	-0.00045423	1.9157	0.0012116	1.1975	0.00075734	632.4300906397543	107.49	0.12125	107.37	107.3	107.42	-0.1238	-0.021776	7.0863E-05	NaN	24.519	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1340400	+		22369	20306	15385	15419							0.2229195407574025
HAKLKSILLKL	11	Unmodified	_HAKLKSILLKL_					0	0	0			REV__ENSG00000065325|ENST00000262441|GLP2R	REV__ENSG00000065325|ENST00000262441|GLP2R	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	632.42919	1262.84383	-1.7423	-0.0011019	2.6183	0.0016559	0.87602	0.00055402	632.4306916995641	107.48	0.10262	107.34	107.29	107.39	-0.1346	-0.046073	0.00095956	NaN	24.519	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3801300	+		22370	20306	15385	15419							0.2229195407574025
HAKRPLPLS	9	Unmodified	_HAKRPLPLS_					0	0	0			REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.75482177734375	2	509.811451	1017.60835	-0.19258	-9.8181E-05	-0.39405	-0.00020089	-0.58663	-0.00029907	509.8107214825575	37.468	0.39658	37.468	37.305	37.702	0					15	10	2	0	0	0	0.024541	1	3063	3063		12.207	0	1	236430	+		22371	26699	15386	15420	25988	25988					0.10024861670990504
HAKSSVAL	8	Unmodified	_HAKSSVAL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.7349548339844	2	406.734877	811.455202	0.74106	0.00030141	-0.30332	-0.00012337	0.43774	0.00017804	406.7346304238571	22.312	0.78953	22.123	21.863	22.653	-0.18894					36	16	3	0	0	0	0.77775	1	790	790		60.972	0.67798	1	1003900			22372	3192	15387	15421	25989	25989					0.04193246554507368
HAKSSVAL	8	Unmodified	_HAKSSVAL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.73486328125	2	406.734877	811.455202	-0.0078127	-3.1777E-06	0.4419	0.00017973	0.43408	0.00017656	406.7349106186708	22.398	0.87883	22.213	21.906	22.784	-0.18539					48	18	4	0	0	0	0.68164	1	790	790		68.787	5.4806	1	985480			22373	3192	15387	15421	25990	25990					0.04193246554507368
HALAAGRL	8	Unmodified	_HALAAGRL_					0	0	0			REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.8631896972656	2	404.743037	807.471521	-0.02646	-1.071E-05	0.091645	3.7093E-05	0.065185	2.6383E-05	404.74291206809403	27.866	0.56753	27.698	27.359	27.927	-0.16816					27	13	3	0	0	0	0.027866	1	1559	1559		8.8223	0	1	287810	+		22374	22688	15388	15422	25991	25991					0.06008372511280413
HALALRAALE	10	Unmodified	_HALALRAALE_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7932739257812	2	532.81419	1063.61383	-1.3686	-0.00072921	0.73202	0.00039003	-0.63659	-0.00033918	532.8145173591113	44.323	0.35231	44.078	43.904	44.256	-0.2444					11	9	2	0	0	0	0.03519	1	4138	4138		27.882	11.409	1	115660	+		22375	28077	15389	15423	25992	25992					0.08456540462793782
HALDILVGL	9	Unmodified	_HALDILVGL_					0	0	0			REV__ENSG00000015413|ENST00000690203|DPEP1	REV__ENSG00000015413|ENST00000690203|DPEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7868957519531	2	475.78711	949.559667	0.737	0.00035065	-0.87543	-0.00041652	-0.13843	-6.5863E-05	475.7866224351529	85.75	2.0796	85.6	84.582	86.661	-0.14967					104	48	4	0	0	0	0.85941	1	10447	10447		35.201	1.6851	1	4960100	+		22376	19967	15390	15424	25993	25993					0.08286948311251763
HALERGVRE	9	Unmodified	_HALERGVRE_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7937622070312	2	533.791247	1065.56794	-1.0908	-0.00058227	3.4905	0.0018632	2.3997	0.0012809	533.7932958382165	44.361	1.0464	44.257	43.96	45.007	-0.10468					86	27	4	0	0	0	0.33245	3	4150	4126;4150;4174		71.296	10.324	1	14632000	+		22377	27060	15391	15425	25994;25995;25996	25995					0.037778952805638255
HALERGVRE	9	Unmodified	_HALERGVRE_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.792236328125	2	533.791247	1065.56794	-1.2272	-0.00065507	3.6771	0.0019628	2.4499	0.0013077	533.793390620758	44.551	1.0891	44.307	44.01	45.099	-0.2444					89	28	4	0	0	0	0.50848	1	4174	4174		58.782	2.0609	1	16015000	+		22378	27060	15391	15425	25997	25997					0.037778952805638255
HALGLMHS	8	Unmodified	_HALGLMHS_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.54827880859375	2	433.22108	864.427607	-0.98718	-0.00042767	1.7572	0.00076126	0.77003	0.00033359	433.2229081767676	24.937	0.22162	24.903	24.815	25.037	-0.034395					10	4	3	0	0	0	0.027866	1	1114	1114		8.8223	0	1	32764			22379	9809	15392	15426	25998	25998					-0.010029799773633385
HALHAHDPV	9	Unmodified	_HALHAHDPV_					0	0	0		nc|ENSG00000175287|Q5SRE7-2|PHYHD1;ENSG00000175287|ENST00000372592|PHYHD1;nc|ENSG00000175287|Q5SRE7-3|PHYHD1	nc|ENSG00000175287|Q5SRE7-2|PHYHD1	nc|ENSG00000175287|Q5SRE7-2|PHYHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7720947265625	2	498.754133	995.493713	0.11716	5.8432E-05	-2.0849	-0.0010398	-1.9677	-0.0009814	498.7530423102039	31.906	0.55685	31.721	31.48	32.036	-0.18503					16	12	2	0	0	0	0.024541	1	2131	2131		17.365	6.4994	1	31099			22380	8546	15393	15427	25999	25999					-0.004214478109702213
HALIGGIVAVV	11	Unmodified	_HALIGGIVAVV_					0	0	0		nc|ENSG00000175161|Q8N3J6-4|CADM2;nc|ENSG00000175161|Q8N3J6-5|CADM2;ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2	nc|ENSG00000175161|Q8N3J6-4|CADM2	nc|ENSG00000175161|Q8N3J6-4|CADM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3135375976562	2	524.829309	1047.64407	-0.19229	-0.00010092	0.75309	0.00039525	0.5608	0.00029432	524.8297848553956	73.264	0.21983	73.274	73.145	73.365	0.0096512					6	5	2	0	0	0	0.024733	1	8877	8877		17.365	0.89182	1	144840			22381	8532	15394	15428	26000	26000					0.12214899127980061
HALIKRSD	8	Unmodified	_HALIKRSD_					0	0	0			REV__nc|ENSG00000171798|Q76NI1-4|KNDC1;REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2730407714844	2	470.272158	938.529764	0.12142	5.7102E-05	-0.22663	-0.00010658	-0.10521	-4.9476E-05	470.27204080654536	88.706	1.0467	88.575	88.277	89.324	-0.13135					54	24	3	0	0	0	0.97924	1	10849	10849		40.573	7.0796	1	328100	+		22382	26602;36935	15395	15429	26001	26001					0.058040093658974
HALLGKTTLI	10	Unmodified	_HALLGKTTLI_					0	0	0		ENST00000485332.7_1_X:221743-228403:-|nuORF	ENST00000485332.7_1_X:221743-228403:-|nuORF	ENST00000485332.7_1_X:221743-228403:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7928466796875	2	533.834591	1065.65463	-1.3725	-0.0007327	-2.0316	-0.0010845	-3.4041	-0.0018172	533.8330014400111	44.556	0.21546	44.345	44.221	44.436	-0.21109					9	5	2	0	0	0	0.03519	1	4149	4149		51.335	42.642	1	87485			22383	15326	15396	15430	26002	26002					0.12442881782430959
HALQKAQRD	9	Unmodified	_HALQKAQRD_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.792236328125	2	533.791247	1065.56794	-1.0908	-0.00058227	3.4905	0.0018632	2.3997	0.0012809	533.7932958382165	44.361	1.0464	44.257	43.96	45.007	-0.10468					86	27	4	0	0	0	0.4752	1	4162	4162		60.972	0	1	14632000			22384	5772	15397	15431	26003	26003					0.037778952805638255
HALQKDAL	8	Unmodified	_HALQKDAL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MSMS	OPSCC_40_ClassI_Rep-3	6	448.2530212402344	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.809	1	25.638	25.138	26.138	-0.17151								0	0	0	0.3668	1	1231	1231		71.296	14.575	1				22385	3327	15398	15432	26004	26004					0.04084918100284085
HALSRLKM	8	Oxidation (M)	_HALSRLKM(Oxidation (M))_		HALSRLKM(1)		HALSRLKM(53)	0	0	1			REV__ENSG00000163898|ENST00000296252|LIPH	REV__ENSG00000163898|ENST00000296252|LIPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.2762451171875	2	486.276386	970.53822	1.994	0.00096963	-2.0023	-0.00097369	-0.0083406	-4.0559E-06	486.2752735710265	19.305	1.0878	19.072	18.731	19.819	-0.23345					33	21	2	0	0	0	0.87148	1	373	373		53.351	12.779	1	148660	+		22386	25652	15399	15433	26005	26005		761			0.051772400108802685
HALTKHRR	8	Unmodified	_HALTKHRR_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8022766113281	2	509.804491	1017.59443	-0.34628	-0.00017653	-0.75983	-0.00038736	-1.1061	-0.0005639	509.80369755737905	88.297	0.82144	88.126	87.893	88.714	-0.17054					32	19	2	0	0	0	0.94517	1	10769	10769		45.952	11.779	1	364470			22387	10589	15400	15434	26006	26006					0.08633628962547846
HALVRSDP	8	Unmodified	_HALVRSDP_					0	0	0			REV__ADAM17-ITGB1BP1|2|fusion	REV__ADAM17-ITGB1BP1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.7432861328125	2	447.743234	893.471915	0.048733	2.182E-05	0.18969	8.4931E-05	0.23842	0.00010675	447.74311839984927	22.275	0.84445	22.073	21.808	22.653	-0.20199					36	17	4	0	0	0	0.95417	1	748	748		44.531	2.0566	1	493510	+		22388	19061	15401	15435	26007	26007					0.020917474404768654
HANISGAIVT	10	Unmodified	_HANISGAIVT_					0	0	0			REV__nc|ENSG00000123191|P35670-2|ATP7B	REV__nc|ENSG00000123191|P35670-2|ATP7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7695007324219	2	491.769448	981.524344	-0.46802	-0.00023016	0.42013	0.0002066	-0.047893	-2.3552E-05	491.7694520645701	27.983	0.7664	27.979	27.692	28.458	-0.0042019					49	18	4	0	0	0	0.82838	1	1594	1594		58.782	5.4305	1	1902200	+		22389	36626	15402	15436	26008	26008					0.03284285783422547
HANTKVGL	8	Unmodified	_HANTKVGL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.240478515625	2	420.240327	838.466101	0.19068	8.013E-05	-0.35495	-0.00014917	-0.16427	-6.9035E-05	420.24016148512544	23.882	2.1153	23.667	23.001	25.116	-0.2151					118	48	6	0	0	0	0.28835	4	994	983;994;1006;1020		116.9	40.057	1	7137600			22390	7065	15403	15437	26009;26010;26011;26012	26010					0.040406489287988734
HANTKVGL	8	Unmodified	_HANTKVGL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.2405090332031	2	420.240327	838.466101	-0.14213	-5.973E-05	0.11327	4.76E-05	-0.028865	-1.213E-05	420.2403641063634	23.764	1.9561	23.585	23.157	25.113	-0.17989					107	45	6	0	0	0	0.47665	3	975	955;963;975		87.754	24.448	1	7626700			22391	7065	15403	15437	26013;26014;26015	26015					0.040406489287988734
HANTKVGL	8	Unmodified	_HANTKVGL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	420.240327	838.466101	2.1481	0.00090273	-2.3094	-0.0009705	-0.16127	-6.7774E-05	420.239350805344	23.786	1.7721	23.595	23.284	25.056	-0.19117					97	40	6	0	0	0	0.30053	3	951	940;951;963		111.65	39.081	1	8333200			22392	7065	15403	15437	26016;26017;26018	26017					0.040406489287988734
HANYCEGECPS	11	Carbamidomethyl (C)	_HANYC(Carbamidomethyl (C))EGECPS_	HANYC(1)EGECPS		HANYC(50)EGEC(-50)PS		0	1	0		ENST00000464515.1_1_7:41729250-41730808:-|nuORF;ENSG00000122641|ENST00000242208|INHBA	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	ENST00000464515.1_1_7:41729250-41730808:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.7293701171875	2	633.729337	1265.44412	-0.86939	-0.00055096	0.54351	0.00034444	-0.32589	-0.00020652	633.729840916325	29.072	1.3213	28.899	28.55	29.872	-0.17258					81	30	4	0	0	0	0.6032	1	1745	1745		69.628	6.3214	2	2417500			22393	3936	15404	15438	26019	26019	47				-0.17798311664250832
HAPFFPEL	8	Unmodified	_HAPFFPEL_					0	0	0		ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	ENSG00000160113|ENST00000291442|NR2F6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.25970458984375	2	479.245078	956.475603	-0.70745	-0.00033904	0.63398	0.00030383	-0.073478	-3.5214E-05	479.24525619090304	25.255	0.39936	25.22	24.992	25.392	-0.034395					14	9	2	0	0	0	0.027866	1	1157	1157		28.254	0	1	112620			22394	6782	15405	15439	26020	26020					-0.004375827856847536
HAPKASING	9	Unmodified	_HAPKASING_					0	0	0		ENST00000463337.1_2_20:62669539-62670381:+|nuORF;ENST00000358393.1_2_20:62669539-62670381:+|nuORF	ENST00000463337.1_2_20:62669539-62670381:+|nuORF	ENST00000463337.1_2_20:62669539-62670381:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.74310302734375	2	447.743234	893.471915	-0.58766	-0.00026312	0.71966	0.00032222	0.132	5.91E-05	447.743377321764	22.336	0.83223	22.151	21.906	22.738	-0.18539					32	17	3	0	0	0	0.92825	1	768	768		30.504	3.7075	1	571120			22395	12716	15406	15440	26021	26021					0.020917474404768654
HAPLHCNL	8	Unmodified	_HAPLHCNL_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2373962402344	2	452.726529	903.438506	-0.48927	-0.0002215	3.2	0.0014487	2.7107	0.0012272	452.7281007366268	26.98	0.59658	26.823	26.464	27.061	-0.15664					25	13	3	0	0	0	0.027866	1	1445	1445		8.2313	0	1	105850	+		22396	27738	15407	15441	26022	26022					-0.017075776030765155
HAPLSGIVL	9	Unmodified	_HAPLSGIVL_					0	0	0			REV__ENST00000442865.1_1_7:29638488-29724509:-|nuORF	REV__ENST00000442865.1_1_7:29638488-29724509:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	453.7737121582031	2	453.774003	905.533452	0.77571	0.000352	-0.63505	-0.00028817	0.14066	6.3828E-05	453.77357947416414	72.243	0.88914	71.961	71.658	72.547	-0.28124					50	22	3	0	0	0	0.52323	1	8753	8753		57.811	9.8957	1	1316900	+		22397	27321	15408	15442	26023	26023					0.076906791397505
HAPLSGIVL	9	Unmodified	_HAPLSGIVL_					0	0	0			REV__ENST00000442865.1_1_7:29638488-29724509:-|nuORF	REV__ENST00000442865.1_1_7:29638488-29724509:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.7735290527344	2	453.774003	905.533452	0.64721	0.00029369	-0.52508	-0.00023827	0.12213	5.5417E-05	453.77361645922275	71.982	0.90265	71.992	71.508	72.411	0.0097733					59	23	4	0	0	0	0.4855	2	8664	8664;8676		60.294	9.8957	1	1719400	+		22398	27321	15408	15442	26024;26025	26024					0.076906791397505
HAPPPVQMGF	10	Unmodified	_HAPPPVQMGF_					0	0	0			REV__nc|ENSG00000109458|Q13480-2|GAB1	REV__nc|ENSG00000109458|Q13480-2|GAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7688598632812	2	540.768394	1079.52224	0.98476	0.00053253	-4.4534	-0.0024082	-3.4686	-0.0018757	540.765806349282	18.996	0.34562	18.996	18.774	19.119	0					11	6	2	0	0	0	0.03519	1	355	355		37.159	10.466	1	37673	+		22399	21793	15409	15443	26026	26026					-0.014344662260327823
HAQLARSPK	9	Unmodified	_HAQLARSPK_					0	0	0		ENSG00000161896|ENST00000293756|IP6K3	ENSG00000161896|ENST00000293756|IP6K3	ENSG00000161896|ENST00000293756|IP6K3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.26165771484375	2	504.290882	1006.56721	0.18286	9.2213E-05	2.2465	0.0011329	2.4293	0.0012251	504.29189471618326	71.164	0.44478	70.892	70.614	71.059	-0.27185					15	9	2	0	0	0	0.018452	1	8272	8272		122.18	25.986	1	256180			22400	6898	15410	15444	26027	26027					0.0641910063151272
HAQLARSPK	9	Unmodified	_HAQLARSPK_					0	0	0		ENSG00000161896|ENST00000293756|IP6K3	ENSG00000161896|ENST00000293756|IP6K3	ENSG00000161896|ENST00000293756|IP6K3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2624206542969	2	504.290882	1006.56721	-0.12524	-6.3158E-05	2.3616	0.0011909	2.2363	0.0011278	504.2919169598874	71.09	0.47284	70.832	70.607	71.08	-0.25713					16	10	2	0	0	0	0.020937	1	8287	8287		110.12	13.929	1	264580			22401	6898	15410	15444	26028	26028					0.0641910063151272
HARGLGGRRR	10	Unmodified	_HARGLGGRRR_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.3200073242188	2	568.337021	1134.65949	0.11454	6.5098E-05	1.6075	0.00091363	1.7221	0.00097872	568.3377308182895	20.365	0.19632	20.142	20.02	20.216	-0.22344					5	3	2	0	0	0	0.03519	1	502	502		14.865	0	1	7984.7	+		22402	23651	15411	15445	26029	26029					0.0975462348842484
HARKTLKTL	9	Unmodified	_HARKTLKTL_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7925415039062	2	534.337833	1066.66111	-1.0502	-0.00056115	0.073349	3.9193E-05	-0.97682	-0.00052195	534.337718834157	44.93	0.35663	44.719	44.514	44.871	-0.21109					14	8	2	0	0	0	0.024418	1	4201	4201		54.776	17.617	1	87862			22403	2089	15412	15446	26030	26030					0.1304481973379552
HASFHERKA	9	Unmodified	_HASFHERKA_					0	0	0			REV__ENST00000218981.5_1_13:52365364-52378245:-|nuORF	REV__ENST00000218981.5_1_13:52365364-52378245:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7593994140625	2	541.778139	1081.54173	-0.51085	-0.00027677	-2.2582	-0.0012235	-2.7691	-0.0015002	541.7765179357348	41.215	0.2332	40.987	40.888	41.121	-0.2278					8	5	2	0	0	0	0.024511	1	3609	3609		32.812	3.6629	1	91892	+		22404	29332	15413	15447	26031	26031					0.004216261090959961
HASFSMYE	8	Unmodified	_HASFSMYE_					0	0	0			REV__nc|ENSG00000127054|Q5TA45-5|INTS11	REV__nc|ENSG00000127054|Q5TA45-5|INTS11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2762451171875	2	486.20001	970.385467	2.4013	0.0011675	4.3017	0.0020915	6.703	0.003259	486.20203932444554	19.001	0.59342	18.767	18.582	19.176	-0.23345					17	11	2	0	0	0	0.027866	1	373	373		19.36	0	1	30341	+		22405	36642	15414	15448	26032	26032					-0.1009100017640776
HASGPIRPIV	10	Unmodified	_HASGPIRPIV_					0	0	0		ENST00000440687.1_1_20:44728270-44728609:+|nuORF	ENST00000440687.1_1_20:44728270-44728609:+|nuORF	ENST00000440687.1_1_20:44728270-44728609:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.26953125	2	523.808908	1045.60326	-1.4936	-0.00078234	0.92694	0.00048554	-0.56662	-0.0002968	523.8091129900484	35.758	0.57996	35.758	35.38	35.96	0					29	14	3	0	0	0	0.03519	1	2725	2725		14.137	0	1	282460			22406	14349	15415	15449	26033	26033					0.08228557808342885
HASGQPVAK	9	Unmodified	_HASGQPVAK_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.7430419921875	2	447.743234	893.471915	0.48233	0.00021596	-0.1151	-5.1534E-05	0.36723	0.00016443	447.7429288520692	22.174	0.74376	21.985	21.676	22.42	-0.18894					36	15	4	0	0	0	0.80003	1	767	767		39.253	0.44669	1	516300	+		22407	28659	15416	15450	26034	26034					0.020917474404654968
HASGQPVAK	9	Unmodified	_HASGQPVAK_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.74346923828125	2	447.743234	893.471915	0.048733	2.182E-05	0.18969	8.4931E-05	0.23842	0.00010675	447.74311839984927	22.275	0.84445	22.073	21.808	22.653	-0.20199					36	17	4	0	0	0	0.62163	1	739	739		51.335	10.763	1	493510	+		22408	28659	15416	15450	26035	26035					0.020917474404654968
HASGQPVAK	9	Unmodified	_HASGQPVAK_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	447.743234	893.471915	0.48233	0.00021596	-0.1151	-5.1534E-05	0.36723	0.00016443	447.7429288520692	22.174	0.74376	21.985	21.676	22.42	-0.18894	-0.084682	-0.00035843	NaN	51.335	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516300	+		22409	28659	15416	15450							0.020917474404654968
HASGRVAPPL	10	Unmodified	_HASGRVAPPL_					0	0	0			REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	REV__ENST00000462537.3_1_6:36646575-36648628:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.8135070800781	2	502.785433	1003.55631	-0.491	-0.00024687	-1.2838	-0.00064549	-1.7748	-0.00089236	502.78523186695634	96.791	0.88622	96.63	96.333	97.219	-0.16106					25	19	2	0	0	0	0.03519	1	11942	11942		39.253	25.116	1	85165	+		22410	32905	15417	15451	26036	26036					0.054676982572118504
HASLEMDTP	9	Unmodified	_HASLEMDTP_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7380065917969	2	500.723849	999.433146	-0.041398	-2.0729E-05	-2.8707	-0.0014374	-2.9121	-0.0014581	500.7223819385951	33.977	0.47539	33.753	33.485	33.96	-0.22412					19	11	2	0	0	0	0.024354	1	2428	2428		38.806	0	1	207260	+		22411	36925	15418	15452	26037	26037					-0.06659345976220266
HASLMERR	8	Unmodified	_HASLMERR_					0	0	0			REV__ENST00000440750.1_1_10:49880355-49880460:-|nuORF	REV__ENST00000440750.1_1_10:49880355-49880460:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7384033203125	2	500.261268	998.507982	-1.3424	-0.00067154	-3.4132	-0.0017075	-4.7556	-0.002379	500.2594388790127	34.167	0.50576	33.991	33.662	34.168	-0.17557					18	12	2	0	0	0	0.027866	1	2441	2441		25.45	2.4135	1	239590	+		22412	32532	15419	15453	26038	26038					0.00866881345677939
HASQRAEHA	9	Unmodified	_HASQRAEHA_					0	0	0		nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7638244628906	2	503.744296	1005.47404	-0.73043	-0.00036795	1.2836	0.00064659	0.55315	0.00027864	503.7451156990166	35.042	0.15118	34.855	34.76	34.911	-0.18675					5	3	2	0	0	0	0.024457	1	2601	2601		45.952	0	1	114490			22413	18722	15420	15454	26039	26039					-0.028478238217303442
HASRHPRISVL	11	Unmodified	_HASRHPRISVL_					0	0	0		ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.9130859375	3	424.914305	1271.72109	-0.67753	-0.00028789	-3.3692	-0.0014316	-4.0467	-0.0017195	424.91269257901234	39.098	1.2978	39.098	38.473	39.771	0					99	35	5	0	0	0	0.99147	1	3326	3326		38.714	7.6459	1	12888000			22414	4300	15421	15455	26040	26040					0.09609510397035592
HATHCDLV	8	Unmodified	_HATHCDLV_					0	0	0			REV__ENSG00000156508|ENST00000309268|EEF1A1	REV__ENSG00000156508|ENST00000309268|EEF1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2079772949219	2	448.20817	894.401786	-0.64959	-0.00029115	0.83779	0.0003755	0.18819	8.435E-05	448.20838313916954	21.692	2.373	21.48	20.773	23.146	-0.2128					108	49	3	0	0	0	0.95417	1	701	701		44.531	0	1	449140	+		22415	25080	15422	15456	26041	26041					-0.04963874219640729
HATLPFTPATP	11	Unmodified	_HATLPFTPATP_					0	0	0		NUP62|p.P185H|1|0.21|ENSG00000213024|chr19:49909254-49909254|G/T|missense_variant	NUP62|p.P185H|1|0.21|ENSG00000213024|chr19:49909254-49909254|G/T|missense_variant	NUP62|p.P185H|1|0.21|ENSG00000213024|chr19:49909254-49909254|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.7854614257812	2	576.806031	1151.59751	-0.65465	-0.00037761	-4.244	-0.0024479	-4.8986	-0.0028255	576.8034363132937	34.631	0.56993	34.424	34.201	34.771	-0.20696					27	13	3	0	0	0	0.024768	1	2554	2554		39.253	0	1	402580			22416	18898	15423	15457	26042	26042					0.027774145060448063
HAVAASEAPE	10	Unmodified	_HAVAASEAPE_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2897644042969	2	491.235439	980.456324	-0.18885	-9.2772E-05	-1.2052	-0.00059202	-1.394	-0.00068479	491.2347569011642	34.258	0.20367	34.258	34.129	34.332	0					6	4	2	0	0	0	0.03519	1	2526	2526		16.473	1.809	1	57868	+		22417	20637	15424	15458	26043	26043					-0.03468583867243069
HAVLATGSG	9	Unmodified	_HAVLATGSG_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.6959228515625	2	406.716685	811.418816	0.038954	1.5843E-05	-0.042545	-1.7304E-05	-0.0035909	-1.4605E-06	406.71672122530236	37.12	0.79018	36.901	36.324	37.114	-0.2195					26	19	2	0	0	0	0.024506	1	2887	2887		16.473	0	1	60106			22418	7724	15425	15459	26044	26044					0.0055636965781786785
HAVLATGSG	9	Unmodified	_HAVLATGSG_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	406.716685	811.418816	0.88666	0.00036062	-1.1868	-0.00048268	-0.30012	-0.00012206	406.7165029211395	36.954	0.76146	36.745	36.161	36.923	-0.2092	-0.078131	-0.00071177	NaN	16.473	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92025			22419	7724	15425	15459							0.0055636965781786785
HAVLGVPR	8	Unmodified	_HAVLGVPR_					0	0	0			REV__ENST00000359947.8_1_1:44088774-44088954:+|nuORF	REV__ENST00000359947.8_1_1:44088774-44088954:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.7585754394531	2	424.758687	847.502821	0.075931	3.2253E-05	0.28621	0.00012157	0.36214	0.00015382	424.75866134362496	31.604	1.3287	31.419	31.136	32.464	-0.18503					57	31	3	0	0	0	1.0017	1	2113	2113		37.028	0	1	1665700	+		22420	30893	15426	15460	26045	26045					0.07296945545363087
HAVNLQQTR	9	Unmodified	_HAVNLQQTR_					0	0	0		ENST00000551241.5_2_12:113369698-113369791:+|nuORF	ENST00000551241.5_2_12:113369698-113369791:+|nuORF	ENST00000551241.5_2_12:113369698-113369791:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7927856445312	2	533.791247	1065.56794	-1.2272	-0.00065507	3.6771	0.0019628	2.4499	0.0013077	533.793390620758	44.551	1.0891	44.307	44.01	45.099	-0.2444					89	28	4	0	0	0	0.50848	1	4149	4149		58.782	7.4465	1	16015000			22421	16597	15427	15461	26046	26046					0.03777895280541088
HAVNLQQTR	9	Unmodified	_HAVNLQQTR_					0	0	0		ENST00000551241.5_2_12:113369698-113369791:+|nuORF	ENST00000551241.5_2_12:113369698-113369791:+|nuORF	ENST00000551241.5_2_12:113369698-113369791:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.791748046875	2	533.791247	1065.56794	-1.3265	-0.00070805	3.7506	0.002002	2.4241	0.001294	533.7934082322464	44.539	1.3348	44.324	44.01	45.345	-0.21505					100	36	4	0	0	0	0.56934	1	4138	4138		54.776	3.4409	1	16249000			22422	16597	15427	15461	26047	26047					0.03777895280541088
HAVQYQLPN	9	Unmodified	_HAVQYQLPN_					0	0	0			REV__ENSG00000092067|ENST00000206513|CEBPE	REV__ENSG00000092067|ENST00000206513|CEBPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.8115844726562	2	535.274898	1068.53524	-0.041974	-2.2468E-05	2.6066	0.0013952	2.5646	0.0013728	535.2764563448749	32.288	0.47821	32.095	31.899	32.377	-0.19261					16	10	2	0	0	0	0.024487	1	2213	2213		31.955	6.5047	1	151240	+		22423	20922	15428	15462	26048	26048					0.0037168815772474773
HAYPVWDLD	9	Unmodified	_HAYPVWDLD_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.7984008789062	2	558.261456	1114.50836	0.14317	7.9928E-05	-4.0592	-0.0022661	-3.916	-0.0021862	558.2591725683353	82.058	0.72535	81.864	81.419	82.144	-0.19334					26	16	2	0	0	0	0.024412	1	9870	9870		17.365	0	1	207480			22424	4935	15429	15463	26049	26049					-0.04431420453488499
HAYQREKM	8	Oxidation (M)	_HAYQREKM(Oxidation (M))_		HAYQREKM(1)		HAYQREKM(46)	0	0	1		ENST00000537218.1_1_12:110338138-110342619:+|nuORF;TCHP|p.E240Gfs*40|1|0.2|ENSG00000139437|chr12:109908602-109908603|-/G|frameshift_variant;ENSG00000139437|ENST00000405876|TCHP	ENST00000537218.1_1_12:110338138-110342619:+|nuORF	ENST00000537218.1_1_12:110338138-110342619:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.759033203125	2	539.758558	1077.50256	1.217	0.00065691	-1.1041	-0.00059597	0.1129	6.0938E-05	539.7578475347033	16.699	0.29655	16.545	16.409	16.706	-0.15376					14	6	3	0	0	0	0.94517	1	96	96		45.952	11.779	1	173150			22425	5335	15430	15464	26050	26050		218			-0.03308842236788223
HAYQREKM	8	Oxidation (M)	_HAYQREKM(Oxidation (M))_					0	0	1		ENST00000537218.1_1_12:110338138-110342619:+|nuORF;TCHP|p.E240Gfs*40|1|0.2|ENSG00000139437|chr12:109908602-109908603|-/G|frameshift_variant;ENSG00000139437|ENST00000405876|TCHP	ENST00000537218.1_1_12:110338138-110342619:+|nuORF	ENST00000537218.1_1_12:110338138-110342619:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	539.758558	1077.50256	-0.4938	-0.00026653	0.73626	0.0003974	0.24247	0.00013087	539.7588393529953	16.637	0.15249	16.429	16.367	16.519	-0.20777	-0.058099	0.0013429	NaN	45.952	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24994			22426	5335	15430	15464				218			-0.03308842236788223
HCAGQAKV	8	Unmodified	_HCAGQAKV_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.26861572265625	2	407.20543	812.396307	1.2712	0.00051763	-4.1599	-0.0016939	-2.8887	-0.0011763	407.2033155983131	28.346	0.44745	28.427	28.167	28.615	0.080812					20	10	3	0	0	0	0.027866	1	1614	1614		62.978	0	1	114110			22427	1075	15431	15465	26051	26051					-0.017395530114640678
HCCCSPGC	8	Unmodified	_HCCCSPGC_					0	0	0			REV__ENST00000533515.5_1_11:57263521-57267149:-|nuORF	REV__ENST00000533515.5_1_11:57263521-57267149:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	2	405.113512	808.21247	-0.98533	-0.00039917	-0.99792	-0.00040427	-1.9832	-0.00080344	405.1109472857454	26.488	0.18703	26.325	26.271	26.458	-0.16331					5	4	2	0	0	0	0.027866	1	1353	1353		4.6817	0	1	30175	+		22428	34608	15432	15466	26052	26052					-0.19930729100485678
HCCIKALSGT	10	Unmodified	_HCCIKALSGT_					0	0	0			REV__nc|ENSG00000075239|P24752-2|ACAT1	REV__nc|ENSG00000075239|P24752-2|ACAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7811889648438	2	516.751887	1031.48922	0.15436	7.9766E-05	3.8412	0.0019849	3.9956	0.0020647	517.2557436105982	71.848	0.63921	71.642	71.344	71.984	-0.20613					19	15	2	0	0	0	0.03519	1	8374	8374		34.173	11.593	1	55549	+		22429	36469	15433	15467	26053	26053					-0.025264163403790008
HCCLLEGTAPH	11	2 Carbamidomethyl (C)	_HC(Carbamidomethyl (C))C(Carbamidomethyl (C))LLEGTAPH_	HC(1)C(1)LLEGTAPH		HC(41)C(41)LLEGTAPH		0	2	0			REV__ENST00000431580.1_1_20:25715449-25715602:+|nuORF	REV__ENST00000431580.1_1_20:25715449-25715602:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	647.78662109375	2	647.786989	1293.55943	-0.63308	-0.0004101	-1.5072	-0.00097635	-2.1403	-0.0013865	647.7860017688704	52.82	0.93496	52.63	52.348	53.283	-0.18982					66	23	5	0	0	0	0.98218	1	5513	5513		40.778	7.9657	1	4092300	+		22430	32368	15434	15468	26054	26054	426;427				-0.0756116274260421
HCCLLSAMMTD	11	Unmodified	_HCCLLSAMMTD_					0	0	0			REV__ENSG00000187758|ENST00000209668|ADH1A	REV__ENSG00000187758|ENST00000209668|ADH1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.5391540527344	3	408.834179	1223.48071	-0.12649	-5.1712E-05	4.2165	0.0017238	4.09	0.0016721	408.8357686861045	30.648	0.71196	30.499	30.219	30.931	-0.14952					38	16	3	0	0	0	0.024752	1	1957	1957		28.577	4.3449	1	360210	+		22431	27969	15435	15469	26055	26055					-0.12209474363544359
HCCNPPSA	8	Unmodified	_HCCNPPSA_					0	0	0			REV__ENSG00000241241|ENST00000440582|KRTAP4-16	REV__ENSG00000241241|ENST00000440582|KRTAP4-16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.7616271972656	2	414.659998	827.305443	0.86112	0.00035707	-3.7202	-0.0015426	-2.8591	-0.0011856	414.6583433336997	87.871	0.11664	87.89	87.832	87.948	0.018555					4	2	2	0	0	0	0.027866	1	10996	10996		31.955	10.253	1	34440	+		22432	28967	15436	15470	26056	26056					-0.11511765051250222
HCCSITDSI	9	Unmodified	_HCCSITDSI_					0	0	0			REV__ENST00000521425.5_2_8:71486761-71486887:-|nuORF	REV__ENST00000521425.5_2_8:71486761-71486887:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7829284667969	2	489.704602	977.394652	0.045148	2.2109E-05	-0.18766	-9.19E-05	-0.14252	-6.9791E-05	489.704322465868	40.36	0.44257	40.248	39.94	40.382	-0.11223					14	11	2	0	0	0	0.024412	1	3521	3521		17.365	0	1	68312	+		22433	34316	15437	15471	26057	26057					-0.09494974882397855
HCDFFKLD	8	Unmodified	_HCDFFKLD_					0	0	0		ENSG00000162851|ENST00000366514|TFB2M;TFB2M-SMYD3|4|fusion;TFB2M-SMYD3|2|fusion	ENSG00000162851|ENST00000366514|TFB2M	ENSG00000162851|ENST00000366514|TFB2M	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.83392333984375	2	512.731477	1023.4484	0.16861	8.645E-05	-3.5543	-0.0018224	-3.3857	-0.001736	513.2308756309427	73.151	0.57074	72.879	72.596	73.167	-0.27126					15	13	2	0	0	0	0.027866	1	8893	8893		63.306	11.007	1	58347			22434	6999	15438	15472	26058	26058					-0.06238434388353653
HCDIMKVPE	9	Unmodified	_HCDIMKVPE_					0	0	0			REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	REV__nc|ENSG00000103647|Q9UQ03-2|CORO2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7652587890625	2	536.25172	1070.48889	-1.1045	-0.00059231	-1.7711	-0.00094977	-2.8757	-0.0015421	536.2507030284612	48.15	1.7384	48.217	47.87	49.608	0.066795					108	47	4	0	0	0	0.024263	1	4963	4963		51.335	8.9393	1	737950	+		22435	21402	15439	15473	26059	26059					-0.04353836060249705
HCFLASFLI	9	Unmodified	_HCFLASFLI_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.7857666015625	2	525.775688	1049.53682	-0.66133	-0.00034771	2.7005	0.0014198	2.0391	0.0010721	525.7767674797211	27.133	0.92557	26.891	26.41	27.335	-0.24217					45	21	4	0	0	0	0.024443	1	1500	1500		35.201	0	1	1018600	+		22436	28002	15440	15474	26060	26060					0.014036059221098185
HCFLLSLL	8	Unmodified	_HCFLLSLL_					0	0	0		ENST00000389100.8_1_5:63665583-63665673:+|nuORF	ENST00000389100.8_1_5:63665583-63665673:+|nuORF	ENST00000389100.8_1_5:63665583-63665673:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2568359375	2	473.264956	944.515359	0.96578	0.00045707	1.6614	0.00078627	2.6272	0.0012433	473.26561682344004	74.797	0.96655	74.797	74.34	75.307	0					42	23	3	0	0	0	0.027866	1	9122	9122		37.028	0	1	141690			22437	13376	15441	15475	26061	26061					0.040882208934021946
HCFPSSHIPG	10	Unmodified	_HCFPSSHIPG_					0	0	0		ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.754150390625	2	541.247826	1080.4811	-0.734	-0.00039728	-4.2788	-0.0023159	-5.0128	-0.0027132	541.2453951990364	38.022	0.4087	37.842	37.594	38.002	-0.17929					17	11	3	0	0	0	0.03519	1	3130	3130		29.15	3.6994	1	314650			22438	14481	15442	15476	26062	26062					-0.05592227265515248
HCFPSSHIPG	10	Unmodified	_HCFPSSHIPG_					0	0	0		ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.247826	1080.4811	-1.1781	-0.00063765	-4.1064	-0.0022226	-5.2845	-0.0028602	541.2454837309265	37.943	0.39947	37.721	37.466	37.866	-0.22149	-0.050867	-0.00034545	NaN	15.642	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378910			22439	14481	15442	15476							-0.05592227265515248
HCFPSSHIPG	10	Unmodified	_HCFPSSHIPG_					0	0	0		ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	ENST00000448373.6_1_19:37068233-37068374:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.247826	1080.4811	-1.7844	-0.0009658	-3.3609	-0.0018191	-5.1453	-0.0027849	541.2459414284191	37.971	0.35853	37.752	37.535	37.894	-0.21848	-0.019641	0.00046155	NaN	15.642	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295080			22440	14481	15442	15476							-0.05592227265515248
HCFVLLLT	8	Unmodified	_HCFVLLLT_					0	0	0		ENST00000392370.7_1_2:188210842-188210896:-|nuORF	ENST00000392370.7_1_2:188210842-188210896:-|nuORF	ENST00000392370.7_1_2:188210842-188210896:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7868957519531	2	473.264956	944.515359	0.15414	7.295E-05	2.6072	0.0012339	2.7614	0.0013069	473.26613598893556	83.821	0.72465	83.683	83.382	84.107	-0.1386					29	16	2	0	0	0	0.027866	1	10089	10089		39.021	12.225	1	315770			22441	13413	15443	15477	26063	26063					0.040882208934021946
HCFVTMEIR	9	Unmodified	_HCFVTMEIR_					0	0	0			REV__ENST00000344756.8_1_7:155100763-155100898:+|nuORF	REV__ENST00000344756.8_1_7:155100763-155100898:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3294677734375	2	568.272986	1134.53142	-0.39661	-0.00022538	2.7652	0.0015714	2.3686	0.001346	568.2743299162416	92.075	0.5155	92.085	91.788	92.304	0.0094147					20	12	2	0	0	0	0.024427	1	11561	11561		26.693	8.4308	1	195130	+		22442	30690	15444	15478	26064	26064					-0.030464409320302366
HCGCSCCPC	9	Unmodified	_HCGCSCCPC_					0	0	0		ENST00000571541.5_1_17:7293706-7296729:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.76629638671875	2	456.618104	911.221655	0.03858	1.7616E-05	1.1029	0.00050361	1.1415	0.00052123	456.61807187038073	23.186	0.24977	23.186	23.033	23.283	0					8	5	2	0	0	0	0.024541	1	875	875		12.959	8.2774	1	18671			22443	9667	15445	15479	26065	26065					-0.23750703806467754
HCHYVVVK	8	Unmodified	_HCHYVVVK_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2872314453125	2	492.75783	983.501106	-0.57797	-0.0002848	4.1686	0.0020541	3.5906	0.0017693	492.75982161088183	30.094	0.36685	30.102	29.922	30.289	0.0086708					12	8	2	0	0	0	0.027866	1	1869	1869		20.482	0	1	51749			22444	6877	15446	15480	26066	26066					0.008695684651229385
HCIPEDLPSQ	10	Unmodified	_HCIPEDLPSQ_					0	0	0		nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF	nc|ENSG00000046889|Q70Z35-3|PREX2	nc|ENSG00000046889|Q70Z35-3|PREX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.3323364257812	2	569.763506	1137.51246	-0.75182	-0.00042836	1.4898	0.00084885	0.73801	0.00042049	570.2662426602969	47.105	0.82641	47.105	46.733	47.56	0					42	22	3	0	0	0	0.03519	1	4653	4653		39.253	16.21	1	518980			22445	16208	15447	15481	26067	26067					-0.05079699022076056
HCKKRTPS	8	Unmodified	_HCKKRTPS_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	478.758361	955.502169	-0.66289	-0.00031737	-2.7231	-0.0013037	-3.386	-0.0016211	478.7568351650006	28.431	0.67784	28.262	28.007	28.685	-0.16897					44	15	4	0	0	0	0.027866	1	1693	1693		7.6903	0	1	733830			22446	593	15448	15482	26068	26068					0.022637828340180022
HCKREDSRA	9	Unmodified	_HCKREDSRA_					0	0	0			REV__EGR2|p.R415C|1|0.17|ENSG00000122877|chr10:62813395-62813395|G/A|missense_variant	REV__EGR2|p.R415C|1|0.17|ENSG00000122877|chr10:62813395-62813395|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.8167724609375	2	551.264539	1100.51452	-0.58037	-0.00031994	4.286	0.0023627	3.7056	0.0020428	551.2667623253047	93.265	0.67758	93.272	93.013	93.691	0.0077286					36	15	4	0	0	0	0.02435	1	11767	11767		34.173	6.2903	1	195220	+		22447	19733	15449	15483	26069	26069					-0.03171225493588281
HCKRTIMP	8	Unmodified	_HCKRTIMP_					0	0	0		ENSG00000112214|ENST00000450218|FHL5	ENSG00000112214|ENST00000450218|FHL5	ENSG00000112214|ENST00000450218|FHL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.29132080078125	2	493.257139	984.499726	-0.040411	-1.9933E-05	-1.4299	-0.00070533	-1.4704	-0.00072526	493.25638569486665	26.918	0.5097	26.918	26.741	27.251	0					17	12	2	0	0	0	0.027866	1	1413	1413		20.482	0	1	117990			22448	3183	15450	15484	26070	26070					0.006856111047000013
HCLEAASIYGN	11	Unmodified	_HCLEAASIYGN_					0	0	0			REV__ENST00000585658.1_1_17:68237680-68237866:+|nuORF	REV__ENST00000585658.1_1_17:68237680-68237866:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.343505859375	2	589.268955	1176.52336	-2.6017	-0.0015331	-2.8513	-0.0016802	-5.4531	-0.0032133	589.2673934066502	90.711	0.37614	90.711	90.511	90.887	0					14	8	2	0	0	0	0.024752	1	11450	11450		25.574	0	1	108110	+		22449	35581	15451	15485	26071	26071					-0.05784296647789233
HCLIILCSP	9	Unmodified	_HCLIILCSP_					0	0	0		ENST00000601575.5_1_19:39575751-39589112:+|nuORF	ENST00000601575.5_1_19:39575751-39589112:+|nuORF	ENST00000601575.5_1_19:39575751-39589112:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7715759277344	2	499.761723	997.508894	-1.0143	-0.00050693	3.6986	0.0018484	2.6843	0.0013415	499.763480702857	28.412	0.40173	28.167	27.961	28.363	-0.24524					16	9	2	0	0	0	0.024541	1	1678	1678		8.2313	0.54101	1	96341			22450	17514	15452	15486	26072	26072					0.010039596703563802
HCLLLCAYVAV	11	Unmodified	_HCLLLCAYVAV_					0	0	0		ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.22198486328125	3	402.212084	1203.61442	0.31163	0.00012534	-1.9448	-0.00078223	-1.6332	-0.00065689	402.2109801604737	24.913	0.68088	24.686	24.206	24.887	-0.22683					18	15	2	0	0	0	0.024765	1	1106	1106		41.427	18.049	1	144900			22451	7619	15453	15487	26073	26073					0.020758757959583818
HCLLPFER	8	Unmodified	_HCLLPFER_					0	0	0			REV__ENST00000451316.6_1_6:33706955-33707015:-|nuORF	REV__ENST00000451316.6_1_6:33706955-33707015:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7641296386719	2	507.763112	1013.51167	-1.1912	-0.00060483	3.4611	0.0017574	2.2699	0.0011526	507.7647220454775	22.122	0.72663	22.196	21.832	22.559	0.073954					24	14	2	0	0	0	0.81662	1	710	710		57.811	2.9167	1	384890	+		22452	32718	15454	15488	26074	26074					0.005455511195464169
HCLPKKKPK	9	Unmodified	_HCLPKKKPK_					0	0	0		ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.78955078125	2	539.831329	1077.6481	-0.38157	-0.00020599	-1.641	-0.00088588	-2.0226	-0.0010919	539.8291405424668	46.682	0.84045	46.682	46.199	47.04	0					61	22	4	0	0	0	0.024262	1	4654	4654		38.806	0	1	1340200			22453	2908	15455	15489	26075	26075					0.11238665350060728
HCLSIAEVSSD	11	Unmodified	_HCLSIAEVSSD_					0	0	0			REV__ENST00000274498.8_1_5:142602043-142602097:+|nuORF	REV__ENST00000274498.8_1_5:142602043-142602097:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	579.7910766601562	2	580.766245	1159.51794	-0.18015	-0.00010463	-3.4811	-0.0020217	-3.6613	-0.0021263	581.2652461958951	94.768	0.38871	94.772	94.446	94.835	0.0041199					12	8	2	0	0	0	0.024735	1	11989	11989		19.997	1.7347	1	43839	+		22454	29834	15456	15490	26076	26076					-0.055440202302634134
HCLVVCYLI	9	Unmodified	_HCLVVCYLI_					0	0	0			REV__ENST00000461696.1_1_3:15838399-15838555:-|nuORF	REV__ENST00000461696.1_1_3:15838399-15838555:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.26708984375	2	531.777373	1061.54019	-0.11546	-6.1399E-05	1.1787	0.00062683	1.0633	0.00056543	531.7772016913667	71.659	0.41669	71.659	71.453	71.869	0					12	10	2	0	0	0	0.024475	1	8676	8676		29.842	0	1	124600	+		22455	32881	15457	15491	26077	26077					0.011885327044637961
HCLYSCHWR	9	Unmodified	_HCLYSCHWR_					0	0	0		ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2	ENSG00000130055|ENST00000374382|GDPD2	ENSG00000130055|ENST00000374382|GDPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.22198486328125	3	402.176144	1203.5066	0.53017	0.00021322	-0.27353	-0.00011001	0.25665	0.00010322	402.17589699312003	24.432	0.5934	24.217	23.999	24.592	-0.2151					27	13	3	0	0	0	0.024438	1	1106	1106		29.17	4.1023	1	333700			22456	4384	15458	15492	26078	26078					-0.08701076014745013
HCMLLQYLHS	10	Unmodified	_HCMLLQYLHS_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.53399658203125	3	415.535338	1243.58418	-0.0072764	-3.0236E-06	-3.2231	-0.0013393	-3.2304	-0.0013424	415.5340009912184	19.785	0.77366	19.624	19.331	20.105	-0.16079					51	15	6	0	0	0	1.1333	1	462	462		28.081	2.9555	1	709310	+		22457	37143	15459	15493	26079	26079					-0.027864828692145238
HCNKVLLRVR	10	Unmodified	_HCNKVLLRVR_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000124177|Q8TD26-3|CHD6;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9	ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.372314453125	2	619.369141	1236.72373	-0.36932	-0.00022875	3.3301	0.0020626	2.9608	0.0018338	619.3711950685711	100.23	0.72057	100.22	99.857	100.58	-0.0050812					48	19	3	0	0	0	1.1329	1	12774	12774		27.882	0	1	919110			22458	18544;4017	15460	15494	26080	26080					0.11483642530333782
HCNNERLII	9	Unmodified	_HCNNERLII_					0	0	0			REV__RAPGEF3|p.D330N|1|0.13|ENSG00000079337|chr12:47749443-47749443|C/T|missense_variant	REV__RAPGEF3|p.D330N|1|0.13|ENSG00000079337|chr12:47749443-47749443|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.2900390625	2	556.287482	1110.56041	-0.87819	-0.00048853	3.6778	0.0020459	2.7996	0.0015574	556.2894433445639	65.496	1.3967	65.223	64.825	66.221	-0.27282					122	37	4	0	0	0	0.18915	1	7753	7753		90.777	8.4716	1	12632000	+		22459	37428	15461	15495	26081	26081					0.009554196886483624
HCNNERLII	9	Unmodified	_HCNNERLII_					0	0	0			REV__RAPGEF3|p.D330N|1|0.13|ENSG00000079337|chr12:47749443-47749443|C/T|missense_variant	REV__RAPGEF3|p.D330N|1|0.13|ENSG00000079337|chr12:47749443-47749443|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2899169921875	2	556.287482	1110.56041	-0.05395	-3.0012E-05	2.822	0.0015698	2.768	0.0015398	556.2889888004471	65.231	1.5317	65.268	64.634	66.166	0.037384					123	41	4	0	0	0	0.27161	1	7670	7670		79.451	2.6044	1	13338000	+		22460	37428	15461	15495	26082	26082					0.009554196886483624
HCPGMVLVV	9	Unmodified	_HCPGMVLVV_					0	0	0			REV__ENST00000455833.6_2_1:19234750-19235035:-|nuORF	REV__ENST00000455833.6_2_1:19234750-19235035:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.3055114746094	2	477.748616	953.482679	0.4984	0.00023811	2.4162	0.0011543	2.9146	0.0013925	477.74999466603396	91.37	0.42087	91.381	91.196	91.617	0.011276					14	9	2	0	0	0	0.024475	1	11510	11510		29.842	0	1	79889	+		22461	32787	15462	15496	26083	26083					0.004076904988892238
HCPNLSQR	8	Unmodified	_HCPNLSQR_					0	0	0			REV__ENST00000508406.1_1_4:85214410-85214560:-|nuORF	REV__ENST00000508406.1_1_4:85214410-85214560:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3057861328125	2	477.732343	953.450133	-0.28666	-0.00013694	2.6889	0.0012846	2.4023	0.0011476	477.73329811320485	23.481	0.16716	23.421	23.347	23.514	-0.060862					5	3	2	0	0	0	0.027866	1	915	915		17.365	5.8539	1	19373	+		22462	34065	15463	15497	26084	26084					-0.028453805797425957
HCPNLSQR	8	Unmodified	_HCPNLSQR_					0	0	0			REV__ENST00000508406.1_1_4:85214410-85214560:-|nuORF	REV__ENST00000508406.1_1_4:85214410-85214560:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.732343	953.450133	-0.23728	-0.00011336	4.6678	0.0022299	4.4305	0.0021166	477.735436407042	23.839	0.2616	23.659	23.519	23.78	-0.17989	0.11932	0.00097868	NaN	17.365	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22717	+		22463	34065	15463	15497							-0.028453805797425957
HCPQNVSEND	10	Unmodified	_HCPQNVSEND_					0	0	0		nc|ENSG00000135164|Q9Y222-4|DMTF1	nc|ENSG00000135164|Q9Y222-4|DMTF1	nc|ENSG00000135164|Q9Y222-4|DMTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.7278442382812	2	571.730194	1141.44584	-1.5713	-0.00089838	-2.4112	-0.0013785	-3.9825	-0.0022769	571.7286734344957	51.347	1.3189	51.434	51.039	52.358	0.087006					94	35	4	0	0	0	1.1088	1	5347	5347		31.53	2.3803	1	4867000			22464	18293	15464	15498	26085	26085					-0.1192293458398126
HCRIVKVPIL	10	Unmodified	_HCRIVKVPIL_					0	0	0		TEX37|p.H162R|1|0.12|ENSG00000172073|chr2:88529416-88529416|A/G|missense_variant	TEX37|p.H162R|1|0.12|ENSG00000172073|chr2:88529416-88529416|A/G|missense_variant	TEX37|p.H162R|1|0.12|ENSG00000172073|chr2:88529416-88529416|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3428955078125	2	589.365536	1176.71652	-0.8894	-0.00052418	-1.0982	-0.00064724	-1.9876	-0.0011714	589.8657977542888	92.692	0.77779	92.57	92.062	92.84	-0.12241					25	18	2	0	0	0	0.03519	1	11403	11403		23.042	0	1	155560			22465	38063	15465	15499	26086	26086					0.13522909929906746
HCRKCGFV	8	Unmodified	_HCRKCGFV_					0	0	0		ENSG00000175895|ENST00000315367|PLEKHF2;ENSG00000166289|ENST00000436066|PLEKHF1	ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7847595214844	2	475.228382	948.442211	-0.51056	-0.00024263	-0.11325	-5.3818E-05	-0.62381	-0.00029645	475.22777283540853	34.563	0.58486	34.613	34.253	34.838	0.050255					21	14	2	0	0	0	0.027866	1	2515	2515		28.254	2.6802	1	91651			22466	8595	15466	15500	26087	26087					-0.034072311008685574
HCRLPLKLL	9	Unmodified	_HCRLPLKLL_					0	0	0			REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8404541015625	2	546.839154	1091.66375	0.67567	0.00036948	1.0747	0.0005877	1.7504	0.00095718	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	0.98128	1	12346	12346		24.203	0	1	9262700	+		22467	23722	15467	15501	26088	26088					0.12158951867104406
HCSGSIATVVP	11	Unmodified	_HCSGSIATVVP_					0	0	0			REV__ENST00000514498.1_1_4:166327046-166327295:-|nuORF	REV__ENST00000514498.1_1_4:166327046-166327295:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.33154296875	2	535.768591	1069.52263	-0.73593	-0.00039429	1.0237	0.00054848	0.28779	0.00015419	535.7692878916902	47.178	0.52024	46.984	46.712	47.232	-0.19387					22	13	3	0	0	0	0.024752	1	4553	4553		40.778	2.9666	1	242110	+		22468	34176	15468	15502	26089	26089					-0.009350912968329794
HCSLDLSRFSY	11	Unmodified	_HCSLDLSRFSY_					0	0	0			REV__ENSG00000175591|ENST00000393597|P2RY2	REV__ENSG00000175591|ENST00000393597|P2RY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.27960205078125	3	443.208167	1326.60267	0.24062	0.00010664	2.9115	0.0012904	3.1521	0.0013971	443.2096750103212	55.031	0.17225	55.031	54.944	55.116	0					6	4	2	0	0	0	0.024759	1	6062	6062		29.551	7.7703	1	109360	+		22469	26961	15469	15503	26090	26090					-0.04756649693626969
HCSSLAQHQKT	11	Unmodified	_HCSSLAQHQKT_					0	0	0		ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	ENSG00000096654|ENST00000683788|ZNF184	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2275085449219	3	413.868144	1238.5826	0.25752	0.00010658	0.83768	0.00034669	1.0952	0.00045327	413.8683781685955	36.977	0.69045	36.784	36.578	37.269	-0.193					40	17	3	0	0	0	0.02478	1	2945	2945		45.908	10.73	1	410580			22470	2052	15470	15504	26091	26091					-0.027144006336129678
HCSTALAR	8	Unmodified	_HCSTALAR_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7847900390625	2	429.716162	857.41777	-0.38611	-0.00016592	-2.4118	-0.0010364	-2.7979	-0.0012023	429.7145813726085	26.584	0.35169	26.421	26.271	26.622	-0.16331					13	8	2	0	0	0	0.027866	1	1367	1367		24.203	7.7296	1	71843	+		22471	26598	15471	15505	26092	26092					-0.016641679827444023
HCTLQLHK	8	Unmodified	_HCTLQLHK_					0	0	0		ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-2|FMN1	ENSG00000248905|ENST00000616417|FMN1	ENSG00000248905|ENST00000616417|FMN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2646179199219	2	490.260736	978.50692	0.50399	0.00024709	-0.83135	-0.00040758	-0.32736	-0.00016049	490.26122435648193	102.84	3.541	102.67	100.6	104.14	-0.17034					126	87	2	0	0	0	1.0338	1	12875	12875		31.955	2.8053	1	366170			22472	10837	15472	15506	26093	26093					0.016806669767788662
HCTSRTKKT	9	Unmodified	_HCTSRTKKT_					0	0	0			REV__ENST00000399247.6_1_6:29694674-29694824:-|nuORF	REV__ENST00000399247.6_1_6:29694674-29694824:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.80615234375	2	531.279657	1060.54476	-1.5772	-0.00083795	1.7182	0.00091283	0.14095	7.4885E-05	531.280436515538	20.561	1.2153	20.561	20.127	21.342	0					34	24	2	0	0	0	0.024457	1	531	531		37.159	4.3467	1	34616	+		22473	31822	15473	15507	26094	26094					0.016911331715846245
HCVAPLLSQ	9	Unmodified	_HCVAPLLSQ_					0	0	0			REV__ENSG00000044012|ENST00000372581|GUCA2B	REV__ENSG00000044012|ENST00000372581|GUCA2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7900695800781	2	484.25512	966.495686	-0.6423	-0.00031104	0.29936	0.00014496	-0.34294	-0.00016607	484.2552481882601	32.586	1.5649	32.598	31.663	33.228	0.011799					81	40	3	0	0	0	0.024506	1	2345	2345		30.504	18.297	1	394440	+		22474	20109	15474	15508	26095	26095					0.011098448826373897
HCVLDFLL	8	Unmodified	_HCVLDFLL_					0	0	0			REV__ENST00000531216.1_1_11:18105066-18108741:-|nuORF	REV__ENST00000531216.1_1_11:18105066-18108741:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.81536865234375	2	480.254588	958.494624	-0.26603	-0.00012776	2.6509	0.0012731	2.3848	0.0011453	480.25584974581676	53.716	0.50021	53.471	53.275	53.775	-0.2453					32	14	3	0	0	0	0.027866	1	5659	5659		35.201	8.4046	1	1479700	+		22475	26055	15475	15509	26096	26096					0.013716305137450036
HDDLWSLFY	9	Unmodified	_HDDLWSLFY_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2;nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000146216|Q5TCY1-2|TTBK1;ENSG00000146216|ENST00000259750|TTBK1	nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000146216|ENST00000259750|TTBK1	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MSMS	OPSCC_40_ClassI_Rep-3	6	598.2756958007812	2	598.274564	1194.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.089	1	68.858	68.358	69.358	-0.23048								0	0	0	0.2977	1	8000	8000		68.485	6.3773	1				22476	4317;5863	15476	15510	26097	26097					-0.054911512819899144
HDFKLPNL	8	Unmodified	_HDFKLPNL_					0	0	0		ENST00000527222.5_2_8:146219906-146225127:-|nuORF	ENST00000527222.5_2_8:146219906-146225127:-|nuORF	ENST00000527222.5_2_8:146219906-146225127:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7719421386719	2	492.269084	982.523616	0.21204	0.00010438	-4.1508	-0.0020433	-3.9387	-0.0019389	492.2666524696594	37.019	0.98215	36.955	36.47	37.452	-0.063385					77	25	5	0	0	0	0.77775	1	2936	2936		60.972	2.19	1	12205000			22477	16143	15477	15511	26098	26098					0.031654911343593994
HDFLTDAI	8	Unmodified	_HDFLTDAI_					0	0	0		nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41;ENST00000515223.1_1_5:180660600-180660825:+|nuORF;ENST00000508930.1_1_5:180660600-180661772:+|nuORF	nc|ENSG00000146063|Q8WV44-2|TRIM41	nc|ENSG00000146063|Q8WV44-2|TRIM41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.78411865234375	2	466.229625	930.444697	0.55592	0.00025919	3.1649	0.0014756	3.7208	0.0017348	466.2310068539045	46.681	0.65329	46.733	46.408	47.061	0.051399					32	17	3	0	0	0	0.027866	1	4537	4537		35.201	6.9464	1	353290			22478	5853	15478	15512	26099	26099					-0.023307808905883576
HDFWQMVWEQG	11	Unmodified	_HDFWQMVWEQG_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2848205566406	3	488.2118	1461.61357	-0.20111	-9.8186E-05	2.1921	0.0010702	1.9909	0.000972	488.21248982159943	55.258	0.16684	55.108	54.965	55.132	-0.15036					6	4	2	0	0	0	0.024809	1	6067	6067		17.167	0.63689	1	54784			22479	6248	15479	15513	26100	26100					-0.09877247319354865
HDIGAEKLIY	10	Unmodified	_HDIGAEKLIY_					0	0	0			REV__ENSG00000115526|ENST00000264249|CHST10	REV__ENSG00000115526|ENST00000264249|CHST10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.8136596679688	2	579.811313	1157.60807	-0.11867	-6.8804E-05	3.7643	0.0021826	3.6456	0.0021138	579.8132789060404	97.943	0.63051	97.953	97.684	98.315	0.010231					34	14	3	0	0	0	0.77808	1	12457	12457		62.107	5.3864	1	218870	+		22480	22211	15480	15514	26101	26101					0.035573971604890176
HDIQLGLDTRS	11	Unmodified	_HDIQLGLDTRS_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2	REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	418.8847351074219	3	418.886081	1253.63641	0.82345	0.00034493	-4.0723	-0.0017058	-3.2488	-0.0013609	418.88431196706347	37.03	1.2083	36.82	36.445	37.653	-0.2092					86	30	4	0	0	0	0.95317	1	2923	2923		47.228	2.2055	1	2461100	+		22481	23014	15481	15515	26102	26102					0.019740950697269
HDLREKDESV	10	Unmodified	_HDLREKDESV_					0	0	0			REV__ENSG00000170364|ENST00000358065|SETMAR	REV__ENSG00000170364|ENST00000358065|SETMAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.18292236328125	3	409.87032	1226.58913	2.0825	0.00085355	2.3421	0.00095997	4.4246	0.0018135	409.8712818918149	24.413	1.0069	24.232	23.848	24.855	-0.18089					37	22	3	0	0	0	0.03519	1	1090	1090		45.022	5.149	1	245940	+		22482	26459	15482	15516	26103	26103					-0.015101842012427369
HDMLQYIKLI	10	Unmodified	_HDMLQYIKLI_					0	0	0			REV__nc|ENSG00000064012|Q14790-9|CASP8	REV__nc|ENSG00000064012|Q14790-9|CASP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.77484130859375	3	425.237286	1272.69003	-0.53626	-0.00022804	4.12	0.001752	3.5838	0.0015239	425.2389369794774	42.873	0.58068	42.873	42.569	43.15	0					47	15	4	0	0	0	0.03519	1	4009	4009		11.097	0	1	1134500	+		22483	19250	15483	15517	26104	26104					0.06459176247903997
HDMWLILRRKR	11	Unmodified	_HDMWLILRRKR_					0	0	0			REV__ENSG00000173548|ENST00000308527|SNX33	REV__ENSG00000173548|ENST00000308527|SNX33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8062744140625	3	508.629512	1522.86671	0.076448	3.8884E-05	-0.83076	-0.00042255	-0.75431	-0.00038367	508.6290097722516	20.587	0.34618	20.419	20.147	20.494	-0.16774					11	6	2	0	0	0	0.024879	1	565	565		8.7993	0	1	19228	+		22484	26784	15484	15518	26105	26105					0.1261864992154642
HDNADLVRVQ	10	Unmodified	_HDNADLVRVQ_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.274658203125	2	583.799269	1165.58398	-0.2585	-0.00015091	-2.995	-0.0017485	-3.2535	-0.0018994	583.797362038488	49.479	1.5523	49.379	48.655	50.207	-0.1008					90	40	3	0	0	0	0.03519	1	4897	4897		39.253	7.723	1	737500	+		22485	19655	15485	15519	26106	26106					0.007815567268153245
HDPVQAGV	8	Unmodified	_HDPVQAGV_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.858154296875	2	411.70886	821.403166	-0.35168	-0.00014479	0.88182	0.00036305	0.53014	0.00021826	411.7090774841697	29.948	0.72186	29.704	29.4	30.122	-0.24415					35	16	3	0	0	0	0.027866	1	1922	1922		28.254	8.8943	1	271240	+		22486	20215	15486	15520	26107	26107					-0.014679168592351743
HDPVQAGV	8	Unmodified	_HDPVQAGV_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	411.70886	821.403166	-0.014071	-5.7932E-06	0.49867	0.00020531	0.4846	0.00019951	411.7089141365065	29.741	0.84467	29.592	29.254	30.099	-0.14952	-0.056109	-0.00026154	NaN	20.482	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220000	+		22487	20215	15486	15520							-0.014679168592351743
HDPVVEVEVS	10	Unmodified	_HDPVVEVEVS_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;ENST00000582319.5_1_17:72462842-72477477:+|nuORF	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.3217163085938	2	555.277303	1108.54005	-1.3943	-0.00077422	-2.5927	-0.0014397	-3.987	-0.0022139	555.2763430982028	91.3	1.0129	91.151	90.772	91.785	-0.1487					37	23	3	0	0	0	0.03519	1	11212	11212		20.947	12.125	1	122610			22488	7743	15487	15521	26108	26108					-0.009874724901919762
HDQACDKGIG	10	Unmodified	_HDQACDKGIG_					0	0	0			REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.8162841796875	2	522.232373	1042.45019	-0.3997	-0.00020874	-1.3502	-0.00070513	-1.7499	-0.00091387	522.231175675716	65.217	0.44653	64.966	64.783	65.229	-0.25112					14	10	2	0	0	0	0.03519	1	7410	7410		40.778	0	1	299740	+		22489	37569	15488	15522	26109	26109					-0.06933425370425539
HDRGLRSRET	10	Unmodified	_HDRGLRSRET_					0	0	0			REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF	REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.5243225097656	3	409.549803	1225.62758	-0.6573	-0.0002692	0.96751	0.00039625	0.31022	0.00012705	409.5500705950605	53.874	2.3462	53.738	53.281	55.627	-0.13617					188	67	4	0	0	0	0.03519	1	5927	5927		21.686	0	1	3883900	+		22490	29761	15489	15523	26110	26110					0.02379166223931861
HDRKMCIIGLS	11	Unmodified	_HDRKMCIIGLS_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;IPO8|p.F945Sfs*21|1|0.44|ENSG00000133704|chr12:30634148-30634148|A/-|frameshift_variant;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.8899841308594	3	424.889892	1271.64785	1.5067	0.0006402	-1.2265	-0.00052114	0.28019	0.00011905	424.8895039089047	20.322	2.5821	20.391	19.972	22.554	0.068901					147	52	6	0	0	0	0.92638	1	510	510		50.034	8.9534	1	3393500			22491	4725	15490	15524	26111	26111					0.02288877567889358
HDTPSQPDDLL	11	Unmodified	_HDTPSQPDDLL_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.19488525390625	3	413.194692	1236.56225	0.28599	0.00011817	0.77385	0.00031975	1.0598	0.00043792	413.194925540476	23.188	0.7576	22.986	22.64	23.398	-0.20193					51	16	5	0	0	0	0.96481	1	888	888		44.639	5.8858	1	961690			22492	7118	15491	15525	26112	26112					-0.04657292812407832
HDVDLCLVS	9	Carbamidomethyl (C)	_HDVDLC(Carbamidomethyl (C))LVS_	HDVDLC(1)LVS		HDVDLC(69)LVS		0	1	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2505493164062	2	529.252774	1056.491	-1.4013	-0.00074167	-2.3866	-0.0012631	-3.788	-0.0020048	529.2515351343243	51.65	0.81878	51.381	51.012	51.831	-0.26903					61	21	4	0	0	0	0.35646	2	5316	5304;5316		68.787	13.283	1	1837600			22493	4422;17944	15492	15526	26113;26114	26114	57				-0.034990840507816756
HDVDLCLVS	9	Carbamidomethyl (C)	_HDVDLC(Carbamidomethyl (C))LVS_					0	1	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	529.252774	1056.491	1.0944	0.00057924	-4.7962	-0.0025384	-3.7018	-0.0019592	529.2502481204525	51.443	0.91116	51.258	50.867	51.778	-0.18404	-0.034739	-0.00094223	NaN	68.787	72	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1863000			22494	4422;17944	15492	15526			57				-0.034990840507816756
HDVLTLTIITL	11	Unmodified	_HDVLTLTIITL_					0	0	0			REV__ENSG00000179695|ENST00000641202|OR6C2	REV__ENSG00000179695|ENST00000641202|OR6C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8690795898438	2	619.871371	1237.72819	-0.9051	-0.00056104	-2.4053	-0.001491	-3.3104	-0.002052	619.869711333175	92.412	2.3777	92.412	91.051	93.429	0					189	56	4	0	0	0	1.0238	1	11838	11838		31.53	0	1	1314500	+		22495	27288	15493	15527	26115	26115					0.11883385434225602
HEAFKPNSLI	10	Unmodified	_HEAFKPNSLI_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15;REV__ENSG00000172766|ENST00000379406|NAA16	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3104858398438	2	578.31148	1154.60841	0.22833	0.00013204	-2.0464	-0.0011834	-1.8181	-0.0010514	578.3101666613311	109.57	0.35733	109.42	109.29	109.65	-0.14889					32	17	2	0	0	0	1.118	1	13463	13463		30.318	1.1682	1	1649300	+		22496	25703;26707	15494	15528	26116	26116					0.03728816880334307
HEDEAGPWWLL	11	Unmodified	_HEDEAGPWWLL_					0	0	0			REV__ENST00000373209.2_1_10:72358109-72358358:-|nuORF	REV__ENST00000373209.2_1_10:72358109-72358358:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.768798828125	3	451.547177	1351.6197	-0.02403	-1.0851E-05	-2.0247	-0.00091423	-2.0487	-0.00092508	451.5461937417882	27.471	0.51185	27.229	26.911	27.423	-0.24217					17	11	2	0	0	0	0.024753	1	1522	1522		31.634	5.5709	1	71646	+		22497	31244	15495	15529	26117	26117					-0.04204405816176404
HEDIPGLK	8	Unmodified	_HEDIPGLK_					0	0	0		nc|ENSG00000121989|P27037-2|ACVR2A;ENSG00000121989|ENST00000241416|ACVR2A	nc|ENSG00000121989|P27037-2|ACVR2A	nc|ENSG00000121989|P27037-2|ACVR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.2458190917969	2	454.745442	907.476331	-0.057645	-2.6214E-05	-0.40733	-0.00018523	-0.46497	-0.00021144	454.74516822572093	98.106	1.7711	97.94	97.306	99.077	-0.16521					70	41	2	0	0	0	1.0574	1	12122	12122		19.36	4.4951	1	181490			22498	3904	15496	15530	26118	26118					0.01889211863374385
HEEFLTLIKGG	11	Unmodified	_HEEFLTLIKGG_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3370971679688	2	622.337695	1242.66084	0.63113	0.00039278	-2.511	-0.0015627	-1.8799	-0.0011699	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	0.9728	1	13509	13509		42.864	7.246	1	1535400			22499	1059	15497	15531	26119	26119					0.0492135522326862
HEEFVQTMC	9	Oxidation (M)	_HEEFVQTM(Oxidation (M))C_		HEEFVQTM(1)C		HEEFVQTM(77)C	0	0	1			REV__OR4C46|p.G101E|1|0.25|ENSG00000185926|chr11:54603697-54603697|C/T|missense_variant	REV__OR4C46|p.G101E|1|0.25|ENSG00000185926|chr11:54603697-54603697|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.2294921875	2	570.228442	1138.44233	0.10733	6.1204E-05	2.5092	0.0014308	2.6165	0.001492	570.2297204363324	63.123	1.3473	62.902	62.609	63.956	-0.22097					71	33	4	0	0	0	0.29158	1	7138	7138		76.774	23.423	1	3336900	+		22500	37314	15498	15532	26120	26120		984			-0.12135320682182282
HEERKTKLSLL	11	Unmodified	_HEERKTKLSLL_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.93292236328125	3	451.933143	1352.7776	1.0325	0.00046661	-2.0942	-0.00094645	-1.0617	-0.00047983	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.017	1	12324	12324		33.039	4.4627	1	1299700			22501	18349	15499	15533	26121	26121					0.11532093443042868
HEEVLKPT	8	Unmodified	_HEEVLKPT_					0	0	0			REV__ENSG00000103510|ENST00000219797|KAT8	REV__ENSG00000103510|ENST00000219797|KAT8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7581787109375	2	476.758549	951.502546	0.59757	0.0002849	-1.8144	-0.00086505	-1.2169	-0.00058015	476.7575883352349	103.57	1.7067	103.44	102.86	104.57	-0.12723					123	42	4	0	0	0	1.0574	1	12878	12878		26.796	0	1	2742400	+		22502	21390	15500	15534	26122	26122					0.024854810348642786
HEEVRWLGQ	9	Unmodified	_HEEVRWLGQ_					0	0	0		ENST00000493253.5_1_17:39778327-39780527:-|nuORF	ENST00000493253.5_1_17:39778327-39780527:-|nuORF	ENST00000493253.5_1_17:39778327-39780527:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.3085327148438	2	577.291079	1152.56761	0.016461	9.5028E-06	-0.48236	-0.00027846	-0.4659	-0.00026896	577.2905954797873	75.074	0.50877	74.899	74.604	75.113	-0.17548					21	11	3	0	0	0	0.024495	1	8844	8844		19.997	0	1	135240			22503	15498	15501	15535	26123	26123					-0.0025752443930286972
HEGLQLLLF	9	Unmodified	_HEGLQLLLF_					0	0	0			REV__nc|ENSG00000114993|Q9BST9-3|RTKN	REV__nc|ENSG00000114993|Q9BST9-3|RTKN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.315185546875	2	535.305667	1068.59678	-1.3737	-0.00073533	0.83274	0.00044577	-0.54092	-0.00028956	535.3058672711537	44.212	0.46946	43.967	43.751	44.22	-0.2444					26	12	3	0	0	0	0.024457	1	4121	4121		37.159	11.709	1	592040	+		22504	22159	15502	15536	26124	26124					0.06522619856991696
HEHIEDGIHGA	11	Unmodified	_HEHIEDGIHGA_					0	0	0		ENSG00000197953|ENST00000356517|AADACL2	ENSG00000197953|ENST00000356517|AADACL2	ENSG00000197953|ENST00000356517|AADACL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	607.3327026367188	2	607.781076	1213.5476	-0.029939	-1.8196E-05	2.6254	0.0015957	2.5955	0.0015775	608.2832700770631	80.895	0.56852	80.688	80.508	81.077	-0.20633					16	13	2	0	0	0	0.024776	1	9702	9702		20.947	0	1	78762			22505	10072	15503	15537	26125	26125					-0.05063320169892904
HEIKKNGI	8	Unmodified	_HEIKKNGI_					0	0	0		ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.2539367675781	2	469.774534	937.534515	0.12953	6.0849E-05	3.1101	0.0014611	3.2396	0.0015219	469.77558009295774	77.226	0.12575	77.015	76.954	77.08	-0.21087					4	2	2	0	0	0	0.027866	1	9493	9493		17.365	5.1581	1	170740			22506	7481	15504	15538	26126	26126					0.06324893508644891
HEIPGLESK	9	Unmodified	_HEIPGLESK_					0	0	0		ENST00000280969.9_1_5:162930152-162930257:+|nuORF	ENST00000280969.9_1_5:162930152-162930257:+|nuORF	ENST00000280969.9_1_5:162930152-162930257:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27508544921875	2	505.269281	1008.52401	-0.41652	-0.00021046	4.2422	0.0021435	3.8257	0.001933	505.77394077100536	56.427	0.57951	56.525	56.173	56.752	0.097893					20	15	2	0	0	0	0.024457	1	6222	6222		21.96	3.6355	1	86566			22507	11719	15505	15539	26127	26127					0.02008866063579262
HEKINVLVE	9	Unmodified	_HEKINVLVE_					0	0	0			REV__ENST00000433048.1_1_7:109599683-109600109:-|nuORF	REV__ENST00000433048.1_1_7:109599683-109600109:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	540.806031	1079.59751	-0.53984	-0.00029195	0.35663	0.00019287	-0.18321	-9.9078E-05	540.8058641429475	52.599	0.99752	52.691	52.16	53.157	0.091938					73	25	4	0	0	0	0.67687	1	5594	5594		47.657	9.8458	1	8001900	+		22508	32393	15506	15540	26128	26128					0.060894145060501614
HEKKVHRSI	9	Unmodified	_HEKKVHRSI_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.330322265625	2	567.330539	1132.64652	0.34076	0.00019332	-1.6564	-0.00093973	-1.3156	-0.0007464	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	0.96322	1	11152	11152		27.882	5.9224	1	4116000	+		22509	24554	15507	15541	26129	26129					0.0855074758567298
HEKKVHRSI	9	Unmodified	_HEKKVHRSI_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3298950195312	2	567.330539	1132.64652	-0.43786	-0.00024841	-0.88397	-0.0005015	-1.3218	-0.00074991	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.93097	1	11106	11106		30.318	1.1477	1	4134200	+		22510	24554	15507	15541	26130	26130					0.0855074758567298
HEKKVKKLQTD	11	Unmodified	_HEKKVKKLQTD_					0	0	0		ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192	ENSG00000230561|ENST00000514853|CCDC192	ENSG00000230561|ENST00000514853|CCDC192	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.9325256347656	3	451.933143	1352.7776	0.13666	6.176E-05	-1.0721	-0.00048451	-0.93543	-0.00042275	451.9325494046975	96.949	2.203	96.949	95.778	97.981	0					146	50	4	0	0	0	1.0592	1	12420	12420		22.562	2.2466	1	652500			22511	10691	15508	15542	26131	26131					0.1153209344302013
HEKKVKKLQTD	11	Unmodified	_HEKKVKKLQTD_					0	0	0		ENSG00000230561|ENST00000514853|CCDC192;nc|ENSG00000230561|P0DO97|CCDC192	ENSG00000230561|ENST00000514853|CCDC192	ENSG00000230561|ENST00000514853|CCDC192	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.93267822265625	3	451.933143	1352.7776	0.7506	0.00033922	-1.6338	-0.00073839	-0.88325	-0.00039917	451.9323062190874	96.976	2.291	96.984	95.564	97.855	0.0089111					165	52	5	0	0	0	1.0471	1	12396	12396		25.892	0.82393	1	646190			22512	10691	15508	15542	26132	26132					0.1153209344302013
HEKNGLPRL	9	Unmodified	_HEKNGLPRL_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7809448242188	2	532.30399	1062.59343	-0.19468	-0.00010363	-4.2866	-0.0022818	-4.4813	-0.0023854	532.3017136481685	57.017	0.65252	56.815	56.52	57.172	-0.20209					53	17	4	0	0	0	0.024397	1	6258	6258		47.657	7.0847	1	3725900			22513	3461	15509	15543	26133	26133					0.06463369802986563
HEKNGLPRL	9	Unmodified	_HEKNGLPRL_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7813720703125	2	532.30399	1062.59343	-0.1845	-9.8212E-05	-4.2838	-0.0022803	-4.4684	-0.0023785	532.3016731784135	57.102	0.59079	56.877	56.582	57.173	-0.2248					41	15	4	0	0	0	0.02435	1	6241	6241		42.396	3.59	1	3667300			22514	3461	15509	15543	26134	26134					0.06463369802986563
HEKNMAVRRQD	11	Unmodified	_HEKNMAVRRQD_					0	0	0			REV__VMP1-RPS6KB1|1|fusion	REV__VMP1-RPS6KB1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.28704833984375	3	461.901848	1382.68372	-0.33544	-0.00015494	-1.0916	-0.00050422	-1.4271	-0.00065916	462.2354795157408	53.177	0.63848	53.03	52.53	53.168	-0.14723					20	16	2	0	0	0	0.024723	1	5696	5696		31.068	15.061	1	87931	+		22515	20265	15510	15544	26135	26135					0.00768051069098874
HEKPKYVL	8	Unmodified	_HEKPKYVL_					0	0	0		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.2908935546875	2	507.292559	1012.57057	-0.17071	-8.6598E-05	-0.28491	-0.00014453	-0.45562	-0.00023113	507.29224342115515	27.573	0.80952	27.331	27.035	27.845	-0.24217					42	18	3	0	0	0	0.87148	1	1544	1544		53.351	5.4358	1	744070			22516	18245	15511	15545	26136	26136					0.06478350685517853
HEKPKYVL	8	Unmodified	_HEKPKYVL_					0	0	0		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.29180908203125	2	507.292559	1012.57057	-0.77762	-0.00039448	0.33864	0.00017179	-0.43898	-0.00022269	507.2925509418983	27.415	0.75737	27.247	26.971	27.729	-0.16816					46	17	4	0	0	0	0.6248	1	1507	1507		73.975	5.49	1	907950			22517	18245	15511	15545	26137	26137					0.06478350685517853
HEKPKYVL	8	Unmodified	_HEKPKYVL_					0	0	0		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.2911071777344	2	507.292559	1012.57057	-0.35346	-0.00017931	-0.42184	-0.000214	-0.7753	-0.00039331	507.2920895406623	27.567	1.0936	27.411	27.145	28.238	-0.15664					56	26	5	0	0	0	0.87148	1	1511	1511		53.351	5.4358	1	1000500			22518	18245	15511	15545	26138	26138					0.06478350685517853
HEKRAPELV	9	Unmodified	_HEKRAPELV_					0	0	0			REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF;REV__nc|ENSG00000076706|P43121-2|MCAM	REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8034057617188	2	539.803823	1077.59309	-1.6006	-0.00086404	1.0368	0.00055966	-0.56387	-0.00030438	539.804487822815	29.044	0.8228	28.799	28.363	29.185	-0.24524					31	14	3	0	0	0	0.35646	1	1748	1748		68.787	10.005	1	765430	+		22519	20572;36476	15512	15546	26139	26139					0.057399500831252226
HEKRAPELV	9	Unmodified	_HEKRAPELV_					0	0	0			REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF;REV__nc|ENSG00000076706|P43121-2|MCAM	REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	539.803823	1077.59309	-1.6006	-0.00086404	1.0368	0.00055966	-0.56387	-0.00030438	539.804487822815	29.044	0.8228	28.799	28.363	29.185	-0.24524	0.022019	0.00021001	NaN	68.787	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	765430	+		22520	20572;36476	15512	15546							0.057399500831252226
HEKRAPELV	9	Unmodified	_HEKRAPELV_					0	0	0			REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF;REV__nc|ENSG00000076706|P43121-2|MCAM	REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.803823	1077.59309	-1.2886	-0.0006956	0.99877	0.00053914	-0.28984	-0.00015646	539.804340166669	28.921	0.68424	28.772	28.529	29.213	-0.14952	-0.0053872	0.00016898	NaN	68.787	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810070	+		22521	20572;36476	15512	15546							0.057399500831252226
HEKTEDNKLSQ	11	Unmodified	_HEKTEDNKLSQ_					0	0	0		ENSG00000123200|ENST00000679008|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13	ENSG00000123200|ENST00000679008|ZC3H13	ENSG00000123200|ENST00000679008|ZC3H13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.28741455078125	3	443.552879	1327.63681	0.87615	0.00038862	-0.26025	-0.00011543	0.6159	0.00027318	443.55288444917346	18.018	0.34641	17.861	17.655	18.002	-0.15637					8	6	2	0	0	0	0.024779	1	268	268		16.53	2.4438	1	22733			22522	3962	15513	15547	26140	26140					-0.013905300010492283
HELALVARR	9	Unmodified	_HELALVARR_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2479248046875	2	532.819807	1063.62506	-0.053416	-2.8461E-05	2.6063	0.0013887	2.5529	0.0013602	532.8210445756429	49.516	0.52798	49.335	49.116	49.644	-0.18071					32	13	3	0	0	0	0.024541	1	4944	4944		17.365	5.8539	1	769510	+		22523	27808	15514	15548	26141	26141					0.09579362556928572
HELGKRLES	9	Unmodified	_HELGKRLES_					0	0	0		nc|ENSG00000183960|Q96L42-2|KCNH8;ENST00000452398.5_1_3:19388190-19491848:+|nuORF;ENSG00000183960|ENST00000328405|KCNH8	nc|ENSG00000183960|Q96L42-2|KCNH8	nc|ENSG00000183960|Q96L42-2|KCNH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7672119140625	2	534.793455	1067.57236	-0.34269	-0.00018327	-3.817	-0.0020413	-4.1597	-0.0022246	534.7911475130983	36.495	1.1044	36.29	35.886	36.99	-0.20518					46	28	2	0	0	0	0.024427	1	2942	2942		26.693	4.733	1	198450			22524	9295	15515	15549	26142	26142					0.04127359703466027
HELQAVLLAL	10	Unmodified	_HELQAVLLAL_					0	0	0		ENST00000422704.6_3_9:92020457-92070849:-|nuORF;ENST00000418828.1_2_9:92020457-92051292:-|nuORF;ENST00000433650.5_2_9:92020457-92020774:-|nuORF	ENST00000422704.6_3_9:92020457-92070849:-|nuORF	ENST00000422704.6_3_9:92020457-92070849:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8303833007812	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.1217	1	11099	11099		21.96	2.8564	1	4967900			22525	13942	15516	15550	26143	26143					0.10094577919790026
HELRIGYVIQ	10	Unmodified	_HELRIGYVIQ_					0	0	0			REV__ENST00000490881.5_1_1:163291794-163297702:+|nuORF	REV__ENST00000490881.5_1_1:163291794-163297702:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8800964355469	3	409.899662	1226.67716	-0.22442	-9.1988E-05	-3.1954	-0.0013098	-3.4198	-0.0014018	409.8984292007388	33.17	0.31205	33.177	33.043	33.355	0.0066261					16	8	3	0	0	0	0.03519	1	2360	2360		26.063	19.045	1	196970	+		22526	24215	15517	15551	26144	26144					0.07288481180034978
HELRKGPQKF	10	Unmodified	_HELRKGPQKF_					0	0	0			REV__ENSG00000122958|ENST00000263559|VPS26A	REV__ENSG00000122958|ENST00000263559|VPS26A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.8951721191406	3	413.903406	1238.68839	0.40699	0.00016845	3.4477	0.001427	3.8547	0.0015955	413.90523255332727	27.342	0.36185	27.342	27.109	27.471	0					11	9	2	0	0	0	0.03519	1	1477	1477		72.879	34.126	1	106190	+		22527	22670	15518	15552	26145	26145					0.07859303274153717
HELRQEHNR	9	Unmodified	_HELRQEHNR_					0	0	0			REV__ENSG00000127586|ENST00000262315|CHTF18	REV__ENSG00000127586|ENST00000262315|CHTF18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.8769836425781	3	406.874398	1217.60137	0.3356	0.00013655	0.66972	0.00027249	1.0053	0.00040904	406.8745604663606	19.691	0.33848	19.573	19.348	19.686	-0.11872					15	6	3	0	0	0	0.82115	1	442	442		37.812	7.4938	1	210800	+		22528	22941	15519	15553	26146	26146					0.0012689705245065852
HELRQEHNR	9	Unmodified	_HELRQEHNR_					0	0	0			REV__ENSG00000127586|ENST00000262315|CHTF18	REV__ENSG00000127586|ENST00000262315|CHTF18	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	406.874398	1217.60137	1.7917	0.00072899	-0.69019	-0.00028082	1.1015	0.00044817	406.87401702554865	19.438	0.29277	19.438	19.218	19.511	0	-0.13431	-0.00037263	NaN	37.812	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250930	+		22529	22941	15519	15553							0.0012689705245065852
HELRQEHNR	9	Unmodified	_HELRQEHNR_					0	0	0			REV__ENSG00000127586|ENST00000262315|CHTF18	REV__ENSG00000127586|ENST00000262315|CHTF18	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	406.874398	1217.60137	0.3356	0.00013655	0.66972	0.00027249	1.0053	0.00040904	406.8745604663606	19.691	0.33848	19.573	19.348	19.686	-0.11872	9.2044E-05	0.0012873	NaN	37.812	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210800	+		22530	22941	15519	15553							0.0012689705245065852
HELTLRQMK	9	Unmodified	_HELTLRQMK_					0	0	0			REV__ENSG00000133997|ENST00000256379|MED6	REV__ENSG00000133997|ENST00000256379|MED6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.7723999023438	2	578.318783	1154.62301	0.21068	0.00012184	-0.25547	-0.00014774	-0.044784	-2.59E-05	578.3183741636618	85.888	0.81924	85.693	85.427	86.246	-0.19508					35	18	3	0	0	0	0.024541	1	10463	10463		15.642	5.9362	1	179430	+		22531	23408	15520	15554	26147	26147					0.05188565756816388
HELTLRQMK	9	Unmodified	_HELTLRQMK_					0	0	0			REV__ENSG00000133997|ENST00000256379|MED6	REV__ENSG00000133997|ENST00000256379|MED6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.318783	1154.62301	0.19349	0.0001119	-0.74624	-0.00043156	-0.55275	-0.00031967	578.3181577706738	85.819	1.4609	85.669	85.243	86.704	-0.14967	-0.023758	-0.00027028	NaN	21.96	40	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199920	+		22532	23408	15520	15554							0.05188565756816388
HELTRMNLQT	10	Unmodified	_HELTRMNLQT_					0	0	0		ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8816833496094	3	414.880162	1241.61866	-1.0623	-0.00044071	0.051811	2.1495E-05	-1.0105	-0.00041922	414.87914942283413	29.402	0.81569	29.157	28.838	29.654	-0.24524					42	18	4	0	0	0	0.03519	1	1768	1768		52.167	18.081	1	142240			22533	5634	15521	15555	26148	26148					0.007510565432539806
HELTVKLLGL	10	Unmodified	_HELTVKLLGL_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.84619140625	2	561.847699	1121.68084	-0.014521	-8.1585E-06	-3.3451	-0.0018794	-3.3596	-0.0018876	561.8456417925604	95.287	1.1033	95.291	95.001	96.104	0.0033722					76	25	4	0	0	0	1.0142	1	12126	12126		44.117	1.6423	1	1820900			22534	2208	15522	15556	26149	26149					0.12487150953893433
HELWLLIKR	9	Unmodified	_HELWLLIKR_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.3663330078125	2	604.369133	1206.72371	-0.25622	-0.00015485	-3.7224	-0.0022497	-3.9786	-0.0024045	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	0.98697	1	12834	12834		23.042	1.0826	1	4809400			22535	9631	15523	15557	26150	26150					0.12861965801971564
HEMEAVLED	9	Unmodified	_HEMEAVLED_					0	0	0			REV__ENSG00000106397|ENST00000223127|PLOD3	REV__ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7848510742188	2	536.734414	1071.45428	-1.0646	-0.00057139	1.6505	0.00088587	0.58592	0.00031448	536.735452831188	55.9	0.17667	55.743	55.643	55.82	-0.15655					6	4	2	0	0	0	0.024506	1	6023	6023		30.504	5.0535	1	61036	+		22536	21616	15524	15558	26151	26151					-0.07859380667332516
HENLQKTASK	10	Unmodified	_HENLQKTASK_					0	0	0		ENSG00000113318|ENST00000265081|MSH3;MSH3|p.N385Qfs*19|1|0.27|ENSG00000113318|chr5:80675095-80675096|-/A|frameshift_variant	ENSG00000113318|ENST00000265081|MSH3	ENSG00000113318|ENST00000265081|MSH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.3091430664062	2	578.309469	1154.60439	-0.063867	-3.6935E-05	1.9699	0.0011392	1.906	0.0011023	578.3104410652635	109.54	0.36329	109.41	109.26	109.63	-0.12453					29	16	2	0	0	0	1.1266	1	13497	13497		29.17	4.6509	1	1325600			22537	3280	15525	15559	26152	26152					0.0332672738659312
HEPAYAVLL	9	Unmodified	_HEPAYAVLL_					0	0	0		SLC26A11-OAF|1|fusion;ENSG00000181045|ENST00000361193|SLC26A11	SLC26A11-OAF|1|fusion	SLC26A11-OAF|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8051452636719	2	506.776742	1011.53893	0.24586	0.0001246	-0.49948	-0.00025313	-0.25362	-0.00012853	507.2781877403229	89.604	0.37901	89.582	89.367	89.746	-0.021645					11	8	2	0	0	0	0.023775	1	11257	11257		38.806	0	1	62214			22538	9020	15526	15560	26153	26153					0.03362357931564475
HEPIPVGHK	9	Unmodified	_HEPIPVGHK_					0	0	0			REV__ENST00000465687.1_1_3:88366676-88366832:+|nuORF	REV__ENST00000465687.1_1_3:88366676-88366832:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.282470703125	2	507.279983	1012.54541	2.5049	0.0012707	4.0223	0.0020404	6.5272	0.0033111	507.28211952136843	18.275	1.3273	18.275	17.94	19.268	0					60	26	5	0	0	0	0.72875	1	295	295		44.117	4.864	1	2841700	+		22539	33013	15527	15561	26154	26154					0.03964295882951774
HEPLTVKVT	9	Unmodified	_HEPLTVKVT_					0	0	0			REV__ENST00000546621.5_1_12:56669975-56676343:-|nuORF	REV__ENST00000546621.5_1_12:56669975-56676343:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.7723693847656	2	512.295299	1022.57605	-0.38438	-0.00019692	-0.17228	-8.8256E-05	-0.55665	-0.00028517	512.2950651675134	31.338	0.81257	31.185	30.887	31.699	-0.15231					43	20	3	0	0	0	0.024539	1	2119	2119		35.618	18.253	1	1257200	+		22540	34845	15528	15562	26155	26155					0.06566029477335178
HEPRPLFL	8	Unmodified	_HEPRPLFL_					0	0	0			REV__ENST00000347785.7_1_11:60893761-60894112:+|nuORF	REV__ENST00000347785.7_1_11:60893761-60894112:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7841491699219	2	504.784902	1007.55525	-0.34095	-0.00017211	-2.0067	-0.001013	-2.3477	-0.0011851	504.7838187807542	98.035	1.7286	97.87	97.125	98.853	-0.1652					69	37	2	0	0	0	0.78609	1	12094	12094		60.294	0	1	974710	+		22541	30709	15529	15563	26156	26156					0.05177483888314782
HEQELLEL	8	Unmodified	_HEQELLEL_					0	0	0			REV__RAD51C|p.T120Qfs*21|1|0.39|ENSG00000108384|chr17:58695140-58695140|A/-|frameshift_variant;REV__ENSG00000108384|ENST00000337432|RAD51C	REV__RAD51C|p.T120Qfs*21|1|0.39|ENSG00000108384|chr17:58695140-58695140|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.7611999511719	2	505.761289	1009.50803	-0.0038285	-1.9363E-06	-1.8441	-0.00093269	-1.848	-0.00093462	505.7605623678543	107.24	0.67344	107.11	106.68	107.35	-0.1238					51	22	3	0	0	0	1.0574	1	13341	13341		26.796	0	1	321480	+		22542	37424;21728	15530	15564	26157	26157					0.0036515982666287528
HEQKNIVNA	9	Unmodified	_HEQKNIVNA_					0	0	0			REV__nc|ENSG00000110330|Q13490-2|BIRC2	REV__nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.323974609375	2	526.777805	1051.54106	0.20188	0.00010635	-1.3401	-0.00070593	-1.1382	-0.00059959	526.7767611754066	32.373	0.60645	32.18	31.771	32.377	-0.19261					24	11	3	0	0	0	0.024457	1	2215	2215		29.15	0	1	311240	+		22543	21853	15531	15565	26158	26158					0.017347866693853575
HEQRGRLL	8	Unmodified	_HEQRGRLL_					0	0	0			REV__ENST00000378279.3_1_8:117950559-117950772:+|nuORF	REV__ENST00000378279.3_1_8:117950559-117950772:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.76446533203125	2	504.788507	1007.56246	-0.57729	-0.00029141	0.091809	4.6344E-05	-0.48548	-0.00024507	504.78843788166563	20.598	0.76853	20.494	20.079	20.848	-0.10477					40	15	4	0	0	0	0.027866	1	581	581		8.2313	0	1	624720	+		22544	31399	15532	15566	26159	26159					0.0589821648875386
HERAIKTTI	9	Unmodified	_HERAIKTTI_					0	0	0			REV__SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant	REV__SCRN3|p.L377Rfs*18|1|0.1|ENSG00000144306|chr2:174427750-174427751|TG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.784912109375	2	534.811648	1067.60874	-1.3095	-0.00070033	0.87227	0.0004665	-0.43721	-0.00023383	534.812097622038	55.802	0.6104	55.9	55.598	56.209	0.097935					29	16	2	0	0	0	0.024381	1	6064	6064		29.15	13.508	1	2009300	+		22545	24324	15533	15567	26160	26160					0.07764236600178265
HEREKTVKTLL	11	Unmodified	_HEREKTVKTLL_					0	0	0			REV__ENSG00000119283|ENST00000366653|TRIM67	REV__ENSG00000119283|ENST00000366653|TRIM67	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9326477050781	3	451.933143	1352.7776	-0.17788	-8.0388E-05	-0.73789	-0.00033348	-0.91577	-0.00041387	451.9326727882281	97.157	2.1391	96.996	95.832	97.972	-0.16105					138	49	5	0	0	0	1.0371	1	12046	12046		28.577	6.0151	1	578610	+		22546	22446	15534	15568	26161	26161					0.11532093443042868
HEREKTVKTLL	11	Unmodified	_HEREKTVKTLL_					0	0	0			REV__ENSG00000119283|ENST00000366653|TRIM67	REV__ENSG00000119283|ENST00000366653|TRIM67	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9330139160156	3	451.933143	1352.7776	-0.033263	-1.5033E-05	-1.0887	-0.00049204	-1.122	-0.00050707	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0371	1	12244	12244		28.577	0	1	1141700	+		22547	22446	15534	15568	26162	26162					0.11532093443042868
HERKIRGSL	9	Unmodified	_HERKIRGSL_					0	0	0		ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF;ENST00000522645.5_1_8:59543991-59572190:-|nuORF	ENSG00000035681|ENST00000038176|NSMAF	ENSG00000035681|ENST00000038176|NSMAF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.2764282226562	2	548.322714	1094.63087	-0.39752	-0.00021797	-3.1199	-0.0017107	-3.5174	-0.0019287	548.8237585828193	47.011	0.75152	46.858	46.479	47.231	-0.15301					82	19	7	0	0	0	0.024477	1	4631	4631		20.947	0	1	2310900			22548	1033	15535	15569	26163	26163					0.08734461068615929
HERVSPVFI	9	Unmodified	_HERVSPVFI_					0	0	0			REV__nc|ENSG00000234616|O75564|JRK	REV__nc|ENSG00000234616|O75564|JRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.843994140625	2	542.300916	1082.58728	2.9561	0.0016031	4.222	0.0022896	7.1781	0.0038927	542.3022202791835	17.693	0.247	17.693	17.548	17.795	0					6	4	2	0	0	0	0.024541	1	183	183		16.473	2.6978	1	37076	+		22549	28918	15536	15570	26164	26164					0.049288515714806636
HESALVAVVLL	11	Unmodified	_HESALVAVVLL_					0	0	0			REV__ENSG00000064115|ENST00000343028|TM7SF3	REV__ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.84375	2	575.845156	1149.67576	-0.10957	-6.3095E-05	-3.6823	-0.0021204	-3.7919	-0.0021835	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	0.95891	1	11336	11336		45.952	5.1738	1	4935500	+		22550	20277	15537	15571	26165	26165					0.10690847091291289
HESALVAVVLL	11	Unmodified	_HESALVAVVLL_					0	0	0			REV__ENSG00000064115|ENST00000343028|TM7SF3	REV__ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8430786132812	2	575.845156	1149.67576	-1.2575	-0.00072414	-2.5466	-0.0014665	-3.8042	-0.0021906	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0054	1	11263	11263		35.618	0.46626	1	6251500	+		22551	20277	15537	15571	26166	26166					0.10690847091291289
HESIKTLKQ	9	Unmodified	_HESIKTLKQ_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000539541.1_1_1:110586362-110587715:+|nuORF;ENST00000473429.5_1_1:110584363-110592127:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.3135375976562	2	542.31148	1082.60841	-0.20697	-0.00011224	2.3295	0.0012633	2.1225	0.0011511	542.3132084600306	70.996	0.94566	70.724	70.451	71.397	-0.27185					44	22	3	0	0	0	0.67687	1	8271	8271		47.657	3.2801	1	5309700			22552	5607	15538	15572	26167	26167					0.07040816880316925
HESLQVLVLP	10	Unmodified	_HESLQVLVLP_					0	0	0			REV__ENSG00000261587|ENST00000696146|TMEM249	REV__ENSG00000261587|ENST00000696146|TMEM249	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3302612304688	2	567.829506	1133.64446	0.18753	0.00010648	3.3063	0.0018774	3.4938	0.0019839	567.8314303030544	93.318	0.52636	93.196	92.927	93.453	-0.12215					30	11	3	0	0	0	0.03519	1	11501	11501		40.778	10.46	1	377550	+		22553	29114	15539	15573	26168	26168					0.08298274057187882
HETTDPLEPV	10	Unmodified	_HETTDPLEPV_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2779541015625	2	569.274761	1136.53497	0.59111	0.0003365	2.9895	0.0017018	3.5806	0.0020383	569.2763162511985	79.856	1.0427	79.609	79.195	80.238	-0.2465					69	24	4	0	0	0	0.60198	1	9549	9549		76.774	0	1	1575800	+		22554	24425	15540	15574	26169	26169					-0.027837763528395953
HEVDRPINDL	10	Unmodified	_HEVDRPINDL_					0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2376708984375	3	403.207043	1206.5993	-0.10184	-4.1062E-05	1.1502	0.00046378	1.0484	0.00042271	403.2074347693937	29.553	0.72446	29.553	29.333	30.057	0					30	17	3	0	0	0	0.03519	1	1860	1860		14.086	0	1	172720	+		22555	25922	15541	15575	26170	26170					0.00426423524004349
HEVHATHTAS	10	Unmodified	_HEVHATHTAS_					0	0	0		ENST00000537880.1_1_12:110352914-110353118:+|nuORF	ENST00000537880.1_1_12:110352914-110353118:+|nuORF	ENST00000537880.1_1_12:110352914-110353118:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3167114257812	2	545.257237	1088.49992	-0.41378	-0.00022562	2.5746	0.0014038	2.1608	0.0011782	545.2590598828567	89.854	0.57875	89.834	89.495	90.074	-0.019249					17	13	2	0	0	0	0.03519	1	11313	11313		51.335	24.643	1	67801			22556	16379	15542	15576	26171	26171					-0.040789743701225234
HEVINISR	8	Unmodified	_HEVINISR_					0	0	0			REV__nc|ENSG00000172171|Q96QE5-4|TEFM	REV__nc|ENSG00000172171|Q96QE5-4|TEFM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.76739501953125	2	484.269616	966.524678	-0.3583	-0.00017352	0.42003	0.00020341	0.061731	2.9895E-05	484.2695229171072	26.866	0.67949	26.698	26.42	27.099	-0.16816					27	15	3	0	0	0	0.027866	1	1462	1462		23.042	12.177	1	465320	+		22557	26641	15543	15577	26172	26172					0.04007705503295256
HEWFIPAR	8	Unmodified	_HEWFIPAR_					0	0	0		ENST00000511381.1_1_5:138677603-138704484:+|nuORF;ENST00000510409.1_1_5:138699473-138700456:+|nuORF;ENSG00000120727|ENST00000265192|PAIP2	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8240356445312	2	528.274701	1054.53485	-0.085538	-4.5188E-05	1.9229	0.0010158	1.8373	0.00097061	528.2759577111659	61.073	0.60287	61.144	60.831	61.434	0.071125					33	15	3	0	0	0	0.027866	1	6999	6999		33.516	16.151	1	209010			22558	3835	15544	15578	26173	26173					0.009763132285115717
HEWFIPAR	8	Unmodified	_HEWFIPAR_					0	0	0		ENST00000511381.1_1_5:138677603-138704484:+|nuORF;ENST00000510409.1_1_5:138699473-138700456:+|nuORF;ENSG00000120727|ENST00000265192|PAIP2	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	ENST00000511381.1_1_5:138677603-138704484:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.274701	1054.53485	-1.1071	-0.00058485	-1.4237	-0.00075209	-2.5308	-0.0013369	528.2736488702292	61.652	0.80468	61.474	61.078	61.883	-0.17781	0.22508	-0.0025564	NaN	31.955	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262850			22559	3835	15544	15578							0.009763132285115717
HEWRGQFSG	9	Unmodified	_HEWRGQFSG_					0	0	0			REV__ENSG00000146006|ENST00000274711|LRRTM2	REV__ENSG00000146006|ENST00000274711|LRRTM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.2537841796875	2	552.254497	1102.49444	-0.19964	-0.00011025	-0.33845	-0.00018691	-0.53809	-0.00029716	552.2541224254933	110.25	0.94171	110.26	110.07	111.01	0.005928					52	29	2	0	0	0	1.0101	1	13951	13951		18.324	0.95945	1	48580	+		22560	24451	15545	15579	26174	26174					-0.052706531619151065
HFCDSNII	8	Unmodified	_HFCDSNII_					0	0	0		ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2381896972656	2	474.715827	947.417102	0.81034	0.00038468	-0.34929	-0.00016581	0.46105	0.00021887	474.7156883956717	72.744	0.57699	72.744	72.333	72.91	0					19	13	2	0	0	0	0.027866	1	8808	8808		27.882	0	1	87729			22561	9066	15546	15580	26175	26175					-0.05871007422445018
HFCDSNII	8	Unmodified	_HFCDSNII_					0	0	0		ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	474.715827	947.417102	0.81929	0.00038893	-0.37076	-0.000176	0.44853	0.00021293	474.715795081866	73.048	0.5735	72.767	72.506	73.08	-0.28124	0.020935	-0.00061632	NaN	27.882	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127100			22562	9066	15546	15580							-0.05871007422445018
HFCDSNII	8	Unmodified	_HFCDSNII_					0	0	0		ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	474.715827	947.417102	0.61092	0.00029001	0.44667	0.00021204	1.0576	0.00050205	474.7160824954049	72.747	0.4574	72.757	72.529	72.986	0.0096512	0.010683	0.00015978	NaN	27.882	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146020			22563	9066	15546	15580							-0.05871007422445018
HFCDSNII	8	Unmodified	_HFCDSNII_					0	0	0		ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	474.715827	947.417102	-0.49048	-0.00023284	1.7712	0.00084081	1.2807	0.00060797	474.71670774380783	72.915	0.21293	72.716	72.582	72.795	-0.19811	-0.029448	0.0014173	NaN	27.882	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46305			22564	9066	15546	15580							-0.05871007422445018
HFGTEVPLLL	10	Unmodified	_HFGTEVPLLL_					0	0	0			REV__chr6:31119733-31120335|108|16.07|0.18|6.48|-|2|None,CDSN|1	REV__chr6:31119733-31120335|108|16.07|0.18|6.48|-|2|None,CDSN|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7903442382812	2	563.318774	1124.623	-0.1971	-0.00011103	-0.16466	-9.2755E-05	-0.36176	-0.00020379	563.3184390646575	49.296	0.67691	49.016	48.682	49.359	-0.27977					24	17	2	0	0	0	0.03519	1	4895	4895		24.203	9.3379	1	278330	+		22565	19454	15547	15581	26176	26176					0.06566889028476908
HFILKPKN	8	Unmodified	_HFILKPKN_					0	0	0		nc|ENSG00000186377|Q8N118-3|CYP4X1;nc|ENSG00000186377|Q8N118-2|CYP4X1;ENSG00000186377|ENST00000371901|CYP4X1	nc|ENSG00000186377|Q8N118-3|CYP4X1	nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8045349121094	2	498.803094	995.591636	-0.048509	-2.4196E-05	1.2296	0.00061332	1.1811	0.00058913	498.80359687571143	52.78	1.1183	52.653	52.353	53.471	-0.12705					100	28	5	0	0	0	1.0572	1	5488	5488		28.254	1.4582	1	22958000			22566	9544	15548	15582	26177	26177					0.09366360785031702
HFIQGQHL	8	Unmodified	_HFIQGQHL_					0	0	0			REV__ENST00000228945.8_1_12:15095121-15095250:-|nuORF	REV__ENST00000228945.8_1_12:15095121-15095250:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.258056640625	2	490.259051	978.503549	-0.12543	-6.1494E-05	-2.1509	-0.0010545	-2.2763	-0.001116	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	1.0572	1	13373	13373		28.254	0.37203	1	7056700	+		22567	29396	15549	15583	26178	26178					0.013437401944315752
HFIQGQHL	8	Unmodified	_HFIQGQHL_					0	0	0			REV__ENST00000228945.8_1_12:15095121-15095250:-|nuORF	REV__ENST00000228945.8_1_12:15095121-15095250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2591857910156	2	490.259051	978.503549	-0.31257	-0.00015324	-1.9033	-0.00093309	-2.2158	-0.0010863	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	1.0017	1	13073	13073		37.028	1.4102	1	4889800	+		22568	29396	15549	15583	26179	26179					0.013437401944315752
HFLLLVMKT	9	Unmodified	_HFLLLVMKT_					0	0	0		ENST00000381232.7_1_14:72200508-72202041:+|nuORF	ENST00000381232.7_1_14:72200508-72202041:+|nuORF	ENST00000381232.7_1_14:72200508-72202041:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3298950195312	2	551.328088	1100.64162	0.31296	0.00017254	3.0945	0.0017061	3.4075	0.0018786	551.3296679926832	18.684	0.79121	18.48	18.163	18.954	-0.20371					36	15	3	0	0	0	0.62163	1	322	322		51.335	3.4199	1	425420			22569	13333	15550	15584	26180	26180					0.09532727398686802
HFLLTHGR	8	Unmodified	_HFLLTHGR_					0	0	0		nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.81207275390625	2	490.774868	979.535184	-1.1053	-0.00054247	-0.33541	-0.00016461	-1.4407	-0.00070708	490.77444977936995	25.892	0.63429	25.656	25.343	25.977	-0.23603					30	15	3	0	0	0	0.027866	1	1260	1260		38.806	3.1879	1	348560			22570	2020	15551	15585	26181	26181					0.04459732948373585
HFLSILTID	9	Unmodified	_HFLSILTID_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3229370117188	2	529.797675	1057.5808	0.13985	7.4093E-05	-0.59499	-0.00031522	-0.45514	-0.00024113	529.7977369645017	70.639	0.43053	70.639	70.397	70.828	0					13	9	2	0	0	0	0.024354	1	8507	8507		47.916	18.766	1	91997			22571	6479;18400	15552	15586	26182	26182					0.05430913620079991
HFLSILTID	9	Unmodified	_HFLSILTID_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.797675	1057.5808	-0.12498	-6.6216E-05	1.0354	0.00054854	0.91039	0.00048232	530.3004479566242	70.824	0.50577	70.835	70.507	71.013	0.010735	0.09819	0.00079422	NaN	47.916	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90573			22572	6479;18400	15552	15586							0.05430913620079991
HFLTIPRL	8	Unmodified	_HFLTIPRL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENST00000560801.5_2_15:31320559-31354823:-|nuORF	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.80401611328125	2	498.803094	995.591636	-0.076385	-3.8101E-05	0.61262	0.00030558	0.53624	0.00026748	498.8033988625939	52.928	2.1732	52.928	51.836	54.01	0					154	58	5	0	0	0	0.97924	3	5745	5734;5745;5756		40.573	3.4135	1	12555000			22573	4760	15553	15587	26183;26184;26185	26184					0.09366360785031702
HFLTIPRL	8	Unmodified	_HFLTIPRL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENST00000560801.5_2_15:31320559-31354823:-|nuORF	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8034362792969	2	498.803094	995.591636	-0.50951	-0.00025414	1.3025	0.00064967	0.79295	0.00039552	498.8036589675882	52.964	1.3147	52.817	52.607	53.921	-0.14723					67	35	2	0	0	0	1.0133	4	5764	5716;5727;5750;5764		35.201	5.3592	1	12483000			22574	4760	15553	15587	26186;26187;26188;26189	26189					0.09366360785031702
HFLTIPRL	8	Unmodified	_HFLTIPRL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENST00000560801.5_2_15:31320559-31354823:-|nuORF	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.80377197265625	2	498.803094	995.591636	-0.032016	-1.5969E-05	0.76347	0.00038082	0.73146	0.00036485	498.80335500721344	52.799	1.1628	52.891	52.674	53.836	0.091938					99	31	4	0	0	0	0.97924	2	5677	5652;5677		40.573	6.3143	1	12396000			22575	4760	15553	15587	26190;26191	26191					0.09366360785031702
HFLTIPRL	8	Unmodified	_HFLTIPRL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENST00000560801.5_2_15:31320559-31354823:-|nuORF	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.80352783203125	2	498.803094	995.591636	0.48095	0.0002399	0.55044	0.00027456	1.0314	0.00051446	498.80328376618695	53.002	1.465	52.743	52.326	53.791	-0.25838					117	39	6	0	0	0	1.0574	1	5571	5571		26.796	2.5934	1	22222000			22576	4760	15553	15587	26192	26192					0.09366360785031702
HFLVGKGL	8	Unmodified	_HFLVGKGL_					0	0	0		ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.7622375488281	2	435.763438	869.512323	-0.43987	-0.00019168	-4.3838	-0.0019103	-4.8236	-0.002102	435.7614209933998	36.443	1.5424	36.401	35.931	37.473	-0.042454					68	41	2	0	0	0	0.71717	2	2897	2884;2897		65.897	8.0862	1	3643900			22577	4694	15554	15588	26193;26194	26194					0.0723471383089418
HFLVLASDLG	10	Unmodified	_HFLVLASDLG_					0	0	0		ENST00000481320.5_1_10:123727168-123733579:-|nuORF;nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENSG00000107672|ENST00000369023|NSMCE4A	ENST00000481320.5_1_10:123727168-123733579:-|nuORF	ENST00000481320.5_1_10:123727168-123733579:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7554321289062	2	536.295299	1070.57605	-1.0386	-0.00055701	-3.5507	-0.0019042	-4.5893	-0.0024612	536.2926179017319	38.286	0.37157	38.107	37.971	38.342	-0.17929					14	10	2	0	0	0	0.03519	1	3172	3172		65.803	9.0821	1	106120			22578	2847	15555	15589	26195	26195					0.043580294773164496
HFLVLASDLG	10	Unmodified	_HFLVLASDLG_					0	0	0		ENST00000481320.5_1_10:123727168-123733579:-|nuORF;nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENSG00000107672|ENST00000369023|NSMCE4A	ENST00000481320.5_1_10:123727168-123733579:-|nuORF	ENST00000481320.5_1_10:123727168-123733579:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.295299	1070.57605	-1.266	-0.00067894	-3.5649	-0.0019118	-4.8309	-0.0025908	536.2932394572873	38.247	0.31719	38.165	38.017	38.334	-0.082516	0.028802	-4.4125E-06	NaN	55.504	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230830			22579	2847	15555	15589							0.043580294773164496
HFNESSASV	9	Unmodified	_HFNESSASV_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2197570800781	2	489.219788	976.425024	-0.46875	-0.00022932	0.41403	0.00020255	-0.054723	-2.6772E-05	489.2198601611738	29.351	1.0638	29.178	28.808	29.872	-0.17258					57	24	4	0	0	0	0.53979	1	1781	1781		56.721	1.2168	1	1188200	+		22580	29153	15556	15590	26196	26196					-0.0641315690132842
HFNLLDPLKNH	11	Unmodified	_HFNLLDPLKNH_					0	0	0		nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;ENST00000561126.1_1_15:56981193-56985362:-|nuORF	nc|ENSG00000285253|Q6N043-3|ZNF280D;ENST00000561126.1_1_15:56981193-56985362:-|nuORF	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.772216796875	3	449.910449	1346.70952	0.42492	0.00019118	3.5703	0.0016063	3.9952	0.0017975	450.2474197822132	19.714	0.24684	19.553	19.331	19.578	-0.16079					6	4	2	0	0	0	0.024727	1	454	454		23.378	4.1152	1	5861.5			22581	5172;16816	15557	15591	26197	26197					0.050032685830274204
HFRHKSQL	8	Unmodified	_HFRHKSQL_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;ENSG00000161940|ENST00000293805|BCL6B	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.7908325195312	2	526.79105	1051.56755	0.31336	0.00016507	-0.21401	-0.00011274	0.099345	5.2334E-05	526.7907726213238	18.96	0.84091	18.8	18.64	19.481	-0.15966					39	16	4	0	0	0	0.71063	1	365	365		66.429	18.772	1	203110			22582	3334	15558	15592	26198	26198					0.04382520351373387
HFRHKSQL	8	Unmodified	_HFRHKSQL_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;ENSG00000161940|ENST00000293805|BCL6B	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.79150390625	2	526.79105	1051.56755	0.4034	0.00021251	-0.32163	-0.00016943	0.08177	4.3076E-05	526.7907703577267	19.033	0.9914	18.829	18.559	19.551	-0.20371					39	19	3	0	0	0	0.6248	1	372	372		73.975	23.95	1	160060			22583	3334	15558	15592	26199	26199					0.04382520351373387
HFRHKSQL	8	Unmodified	_HFRHKSQL_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;ENSG00000161940|ENST00000293805|BCL6B	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.7907104492188	2	526.79105	1051.56755	2.0932	0.0011027	-1.8314	-0.00096474	0.26189	0.00013796	526.7899107698777	19.038	0.89075	18.805	18.582	19.473	-0.23345					37	17	3	0	0	0	0.77775	1	354	354		60.972	18.108	1	152470			22584	3334	15558	15592	26200	26200					0.04382520351373387
HFRPRGFP	8	Unmodified	_HFRPRGFP_					0	0	0			REV__ENST00000423056.2_1_1:11539256-11541348:+|nuORF	REV__ENST00000423056.2_1_1:11539256-11541348:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2740173339844	2	507.275035	1012.53552	-0.55386	-0.00028096	-1.0557	-0.00053554	-1.6096	-0.0008165	507.2743394819042	67.026	0.8922	67.026	66.714	67.606	0					65	21	4	0	0	0	0.91239	1	8005	8005		50.025	2.3672	1	2889600	+		22585	32209	15559	15593	26201	26201					0.029751526682275653
HFRRSLRHI	9	Unmodified	_HFRRSLRHI_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3563232421875	2	611.357422	1220.70029	-0.45812	-0.00028007	-1.5787	-0.00096518	-2.0369	-0.0012453	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	0.92825	1	11611	11611		30.504	2.4222	1	13365000			22586	3098	15560	15594	26202	26202					0.09876964808040611
HFSIYDVLAL	10	Unmodified	_HFSIYDVLAL_					0	0	0			REV__nc|ENSG00000258597|P20848|SERPINA2	REV__nc|ENSG00000258597|P20848|SERPINA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.34326171875	2	589.316232	1176.61791	-2.615	-0.001541	-2.0693	-0.0012195	-4.6842	-0.0027605	589.3158220053094	90.76	0.58644	90.76	90.384	90.97	0					13	13	2	0	0	0	0.03519	1	11474	11474		37.159	2.9866	1	53640	+		22587	37179	15561	15595	26203	26203					0.03666585165865399
HFTAPILVF	9	Unmodified	_HFTAPILVF_					0	0	0			REV__ENST00000497997.1_1_3:119393998-119394220:-|nuORF	REV__ENST00000497997.1_1_3:119393998-119394220:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7962646484375	2	522.797478	1043.5804	-1.0955	-0.00057271	-0.002389	-1.249E-06	-1.0979	-0.00057396	522.7973178051591	38.956	2.4556	38.792	37.754	40.209	-0.16458					157	67	3	0	0	0	0.80658	1	3266	3266		38.806	4.8845	1	2272300	+		22588	33865	15562	15596	26204	26204					0.0603553869091229
HFTIKDPA	8	Unmodified	_HFTIKDPA_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2742004394531	2	464.747985	927.481417	-0.18766	-8.7215E-05	1.3804	0.00064155	1.1928	0.00055434	464.74842658479827	52.064	0.45316	51.916	51.642	52.095	-0.14735					24	12	3	0	0	0	0.027866	1	5548	5548		60.972	30.468	1	461100			22589	8136	15563	15597	26205	26205					0.01477515725991907
HFVMYPVVI	9	Unmodified	_HFVMYPVVI_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|326|3|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|335|3|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|20;chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|60;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|53;chr2:113477199-113482177|353|19.55|0.21|6.52|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|45;chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|46;chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|75;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|74	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|335|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3243408203125	2	552.799163	1103.58377	0.30953	0.00017111	-0.10609	-5.8647E-05	0.20344	0.00011246	552.7990010023545	20.124	0.38734	19.901	19.73	20.117	-0.22344					16	7	3	0	0	0	0.024541	1	478	478		29.842	1.7601	1	40569			22590	286	15564	15598	26206	26206					0.03612465473247539
HFVPMGLYI	9	Unmodified	_HFVPMGLYI_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.790283203125	2	538.783513	1075.55247	-0.17231	-9.2837E-05	3.7774	0.0020352	3.6051	0.0019424	538.7854889403313	69.974	0.49693	69.974	69.669	70.166	0					25	14	2	0	0	0	1.0281	1	8455	8455		14.664	0.52697	1	1066200			22591	5099	15565	15599	26207	26207					0.01771892439160183
HFVPMGLYI	9	Unmodified	_HFVPMGLYI_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.783513	1075.55247	0.24385	0.00013138	3.7424	0.0020164	3.9863	0.0021477	538.7852729171112	70.284	0.44903	69.992	69.714	70.163	-0.29292	-0.02223	-0.00024502	NaN	14.664	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1301600			22592	5099	15565	15599							0.01771892439160183
HFVPMGLYI	9	Unmodified	_HFVPMGLYI_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.783513	1075.55247	-0.90721	-0.00048879	4.5784	0.0024667	3.6712	0.001978	538.7860330749211	70.064	0.89082	70.076	69.791	70.682	0.012421	0.062385	0.00065576	NaN	14.664	31	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039000			22593	5099	15565	15599							0.01771892439160183
HFWEQKEDFTF	11	Unmodified	_HFWEQKEDFTF_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.2704162597656	3	505.229736	1512.66738	-0.68051	-0.00034382	-3.3137	-0.0016742	-3.9942	-0.002018	505.227934712826	40.248	1.2026	40.271	39.873	41.076	0.023006					61	33	3	0	0	0	0.024873	1	3578	3578		14.086	3.9821	1	330730			22594	3387	15566	15600	26208	26208					-0.06844751616017675
HGAAGAIRP	9	Unmodified	_HGAAGAIRP_					0	0	0		ENSG00000214960|ENST00000407010|CRPPA	ENSG00000214960|ENST00000407010|CRPPA	ENSG00000214960|ENST00000407010|CRPPA	MSMS	OPSCC_40_ClassI_Rep-3	6	425.2381591796875	2	425.238119	848.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.108	1	21.906	21.406	22.406	-0.20199								0	0	0	0.64601	1	725	725		31.955	2.8053	1				22595	10575	15567	15601	26209	26209					0.031391845059033585
HGAGSPLPIT	10	Unmodified	_HGAGSPLPIT_					0	0	0		ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.24932861328125	2	475.258717	948.50288	-0.22055	-0.00010482	1.7754	0.00084376	1.5548	0.00073894	475.25947991936863	48.374	1.5445	48.44	47.839	49.383	0.066795					90	42	3	0	0	0	0.03519	1	5012	5012		44.117	24.12	1	614900			22596	4287	15568	15602	26210	26210					0.026569007546981993
HGAKTTTTT	9	Unmodified	_HGAKTTTTT_					0	0	0			REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	REV__ENST00000592939.1_1_17:76105130-76105382:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.23876953125	2	459.237981	916.461409	0.40923	0.00018794	3.2912	0.0015115	3.7005	0.0016994	459.2394763006166	110.55	0.58859	110.56	110.32	110.91	0.0069427					27	15	2	0	0	0	0.92825	1	13923	13923		30.504	8.5438	1	38194	+		22597	35670	15569	15603	26211	26211					-0.00016280004649615876
HGAPTRKDM	9	Unmodified	_HGAPTRKDM_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7765197753906	2	506.753276	1011.492	-0.53524	-0.00027123	0.47938	0.00024293	-0.055863	-2.8309E-05	506.753070284865	51.412	0.38414	51.136	50.929	51.313	-0.27643					13	9	2	0	0	0	0.024405	1	5259	5259		44.117	24.757	1	137370			22598	4317	15570	15604	26212	26212					-0.013288248912317613
HGAQFHKRV	9	Unmodified	_HGAQFHKRV_					0	0	0			REV__ENSG00000075643|ENST00000261326|MOCOS	REV__ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2980346679688	2	540.296499	1078.57845	-1.0759	-0.00058129	3.8248	0.0020665	2.7489	0.0014852	540.298537960825	21.799	1.3564	21.799	21.537	22.894	0					71	28	4	0	0	0	0.88411	1	702	702		33.516	3.0119	1	1943800	+		22599	20554	15571	15605	26213	26213					0.04229922725653523
HGAVHLLATK	10	Unmodified	_HGAVHLLATK_					0	0	0			REV__PIK3CG|p.E55K|1|0.43|ENSG00000105851|chr7:106867724-106867724|G/A|missense_variant	REV__PIK3CG|p.E55K|1|0.43|ENSG00000105851|chr7:106867724-106867724|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3035888671875	2	523.808908	1045.60326	2.148	0.0011252	-2.378	-0.0012456	-0.22997	-0.00012046	523.8076639629451	18.292	0.29515	18.292	18.087	18.382	0					7	5	2	0	0	0	0.03519	1	248	248		21.96	7.8228	1	28909	+		22600	37376	15572	15606	26214	26214					0.08228557808365622
HGAVHLLATK	10	Unmodified	_HGAVHLLATK_					0	0	0			REV__PIK3CG|p.E55K|1|0.43|ENSG00000105851|chr7:106867724-106867724|G/A|missense_variant	REV__PIK3CG|p.E55K|1|0.43|ENSG00000105851|chr7:106867724-106867724|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.808908	1045.60326	-0.021885	-1.1464E-05	-0.0011095	-5.8115E-07	-0.022995	-1.2045E-05	523.8087028845704	18.49	0.39462	18.358	18.154	18.549	-0.13147	-0.0094874	0.0015092	NaN	27.882	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27025	+		22601	37376	15572	15606							0.08228557808365622
HGAVHLLATK	10	Unmodified	_HGAVHLLATK_					0	0	0			REV__PIK3CG|p.E55K|1|0.43|ENSG00000105851|chr7:106867724-106867724|G/A|missense_variant	REV__PIK3CG|p.E55K|1|0.43|ENSG00000105851|chr7:106867724-106867724|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.808908	1045.60326	4.0622	0.0021278	-5.772	-0.0030234	-1.7098	-0.0008956	524.3074578368547	18.39	0.24644	18.453	18.353	18.599	0.063307	0.085228	-0.0045364	NaN	27.882	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9977.4	+		22602	37376	15572	15606							0.08228557808365622
HGAYTKILEVM	11	Unmodified	_HGAYTKILEVM_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.5807189941406	3	421.225158	1260.65364	0.49607	0.00020896	3.2385	0.0013641	3.7345	0.0015731	421.22641448886304	17.571	0.1773	17.428	17.276	17.453	-0.14278					6	3	2	0	0	0	0.024869	1	156	156		14.694	0.60766	1	45215			22603	5951	15573	15607	26215	26215					0.03374299351185073
HGCGSQLHSI	10	Unmodified	_HGCGSQLHSI_					0	0	0		ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2620239257812	2	519.742908	1037.47126	0.22281	0.0001158	-3.6745	-0.0019098	-3.4517	-0.001794	519.7408436417376	55.877	0.82686	55.661	55.409	56.236	-0.21607					28	21	2	0	0	0	0.03519	1	6082	6082		30.318	0	1	393070			22604	11310	15574	15608	26216	26216					-0.04597415270882266
HGCGSQLHSI	10	Unmodified	_HGCGSQLHSI_					0	0	0		ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	ENST00000245407.7_1_5:131726498-131729479:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.742908	1037.47126	-1.1012	-0.00057236	-2.6762	-0.001391	-3.7775	-0.0019633	519.7413629553497	55.771	0.54434	55.614	55.312	55.856	-0.15655	-0.023654	0.00041387	NaN	17.468	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427970			22605	11310	15574	15608							-0.04597415270882266
HGCPPVHFLHH	11	Unmodified	_HGCPPVHFLHH_					0	0	0		ENST00000307845.7_1_2:10567007-10567424:+|nuORF	ENST00000307845.7_1_2:10567007-10567424:+|nuORF	ENST00000307845.7_1_2:10567007-10567424:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.26513671875	3	427.541703	1279.60328	0.16151	6.9053E-05	-4.055	-0.0017337	-3.8935	-0.0016646	427.5401129425626	53.97	0.48236	53.724	53.559	54.041	-0.2453					22	15	3	0	0	0	0.024727	1	5692	5692		27.047	4.4677	1	175890			22606	12015	15575	15609	26217	26217					-0.02533765463272175
HGCQAAKV	8	Unmodified	_HGCQAAKV_					0	0	0			REV__nc|ENSG00000141905|P08651-4|NFIC	REV__nc|ENSG00000141905|P08651-4|NFIC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.2685852050781	2	407.20543	812.396307	0.0049136	2.0008E-06	-4.291	-0.0017473	-4.2861	-0.0017453	407.2035311182337	28.678	0.50149	28.674	28.374	28.875	-0.0042019					22	11	3	0	0	0	0.027866	1	1684	1684		54.765	0	1	104510	+		22607	24124	15576	15610	26218	26218					-0.017395530114640678
HGDFPLTPHAS	11	Unmodified	_HGDFPLTPHAS_					0	0	0		ENSG00000167680|ENST00000586582|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.3441162109375	2	589.783087	1177.55162	0.81076	0.00047817	-0.48009	-0.00028315	0.33067	0.00019503	589.7827678555163	90.258	0.32318	90.272	90.043	90.366	0.013443					11	7	2	0	0	0	0.024732	1	11341	11341		40.778	16.259	1	56623			22608	7722	15577	15611	26219	26219					-0.030052306761945147
HGDIKCVL	8	Unmodified	_HGDIKCVL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.7349548339844	2	442.736563	883.458573	0.051574	2.2834E-05	-3.7811	-0.001674	-3.7296	-0.0016512	442.734834374609	23.462	1.2635	23.26	22.967	24.231	-0.20193					77	28	4	0	0	0	0.88442	2	919	919;979		52.299	2.2746	1	4046600			22609	1808	15578	15612	26220;26221	26220					0.012181733368720415
HGDLLPLTN	9	Unmodified	_HGDLLPLTN_					0	0	0		PARD6A|p.D325Vfs*19|1|0.12|ENSG00000102981|chr16:67662579-67662580|-/TAGA|frameshift_variant;ENSG00000102981|ENST00000458121|PARD6A;nc|ENSG00000102981|Q9NPB6|PARD6A	PARD6A|p.D325Vfs*19|1|0.12|ENSG00000102981|chr16:67662579-67662580|-/TAGA|frameshift_variant	PARD6A|p.D325Vfs*19|1|0.12|ENSG00000102981|chr16:67662579-67662580|-/TAGA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2599792480469	2	490.263999	978.513445	-0.092057	-4.5132E-05	-3.0794	-0.0015097	-3.1715	-0.0015549	490.26301759573107	104.45	0.85825	104.45	103.77	104.63	-0.0032196					41	20	3	0	0	0	0.92825	1	13284	13284		30.504	2.6214	1	202140			22610	2452	15579	15613	26222	26222					0.023328834091216777
HGDMHSLV	8	Unmodified	_HGDMHSLV_					0	0	0		ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2082214355469	2	448.20817	894.401786	0.48938	0.00021934	-0.46718	-0.00020939	0.022202	9.9513E-06	448.2079089980502	21.589	2.5273	21.411	21.065	23.592	-0.17721					105	54	4	0	0	0	0.94001	1	703	703		46.766	6.1938	1	336830			22611	2301	15580	15614	26223	26223					-0.04963874219640729
HGDMHSLV	8	Unmodified	_HGDMHSLV_					0	0	0		ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2080993652344	2	448.20817	894.401786	0.37078	0.00016619	-0.033718	-1.5113E-05	0.33706	0.00015107	448.2079983550804	21.065	0.58985	20.869	20.632	21.221	-0.19577					34	11	4	0	0	0	0.85409	1	621	621		54.765	0	1	579560			22612	2301	15580	15614	26224	26224					-0.04963874219640729
HGDNLKNTK	9	Unmodified	_HGDNLKNTK_					0	0	0		ENSG00000170477|ENST00000551956|KRT4;CON__P19013	ENSG00000170477|ENST00000551956|KRT4	ENSG00000170477|ENST00000551956|KRT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.734375	2	513.76998	1025.52541	-0.42651	-0.00021913	-3.4058	-0.0017498	-3.8323	-0.0019689	513.7680948291135	42.48	1.1104	42.248	41.695	42.806	-0.23186					45	29	3	0	0	0	0.024495	1	3753	3753		19.997	0	1	500870		+	22613	525	15581	15615	26225	26225					0.013665001523122555
HGDRPRPT	8	Unmodified	_HGDRPRPT_					0	0	0			REV__ENSG00000146700|ENST00000275560|SSC4D	REV__ENSG00000146700|ENST00000275560|SSC4D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.24395751953125	2	468.243932	934.473312	-0.18849	-8.8262E-05	1.8659	0.00087368	1.6774	0.00078542	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	1.0133	1	12980	12980		35.201	3.2459	1	4433200	+		22614	24505	15582	15616	26226	26226					0.0034538152922323206
HGDTPLHIA	9	Unmodified	_HGDTPLHIA_					0	0	0		ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2;ENST00000461880.5_1_6:31852420-31852859:-|nuORF	ENST00000494816.5_1_6:31847863-31852859:-|nuORF	ENST00000494816.5_1_6:31847863-31852859:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.78936767578125	2	480.748516	959.482479	-1.0663	-0.00051263	1.1397	0.0005479	0.073357	3.5266E-05	480.74886624268225	33.802	0.50423	33.626	33.43	33.934	-0.17557					26	12	3	0	0	0	0.024386	1	2431	2431		18.324	0	1	565740			22615	10336	15583	15617	26227	26227					0.0011173009489766628
HGEQAALHL	9	Unmodified	_HGEQAALHL_					0	0	0			REV__nc|ENSG00000029534|P16157-2|ANK1	REV__nc|ENSG00000029534|P16157-2|ANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7902526855469	2	488.253966	974.493378	-0.58095	-0.00028365	4.0927	0.0019983	3.5118	0.0017146	488.25692685954783	83.665	0.34216	83.574	83.427	83.769	-0.090454					9	7	2	0	0	0	0.024294	1	10415	10415		65.803	32.288	1	37593	+		22616	20038	15584	15618	26228	26228					0.005111324691824848
HGFDIDHGL	9	Unmodified	_HGFDIDHGL_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2;REV__nc|ENSG00000196961|O95782|AP2A1	REV__nc|ENSG00000196961|O95782|AP2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2695617675781	2	505.738148	1009.46174	0.21595	0.00010922	3.1063	0.001571	3.3223	0.0016802	505.73966714046753	18.717	0.49521	18.514	18.262	18.757	-0.20371					14	9	2	0	0	0	0.024466	1	347	347		33.516	8.0654	1	26362	+		22617	28246;27526	15585	15619	26229	26229					-0.04260860284773571
HGFLRQAL	8	Unmodified	_HGFLRQAL_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;ENST00000569161.1_1_15:74315283-74324931:+|nuORF;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.2695617675781	2	471.269419	940.524284	-0.25241	-0.00011895	0.31025	0.00014621	0.057836	2.7256E-05	471.2694463764653	40.061	1.3026	39.911	39.668	40.971	-0.1497					52	34	3	0	0	0	0.40853	1	3446	3446		96.048	12.761	1	2386600			22618	5414	15586	15620	26230	26230					0.05164330574086762
HGFLRQAL	8	Unmodified	_HGFLRQAL_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;ENST00000569161.1_1_15:74315283-74324931:+|nuORF;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.2691650390625	2	471.269419	940.524284	-0.0022502	-1.0604E-06	0.098985	4.6649E-05	0.096735	4.5588E-05	471.269306661163	40.238	1.0757	40.013	39.734	40.81	-0.225					53	28	3	0	0	0	0.28298	1	3467	3467		119.22	53.418	1	2391000			22619	5414	15586	15620	26231	26231					0.05164330574086762
HGFLRQAL	8	Unmodified	_HGFLRQAL_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;ENST00000569161.1_1_15:74315283-74324931:+|nuORF;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.2691955566406	2	471.269419	940.524284	-1.1159	-0.00052591	1.3415	0.00063221	0.22557	0.0001063	471.2698925133903	40.242	1.038	40.012	39.733	40.771	-0.2302					50	27	3	0	0	0	0.40853	1	3457	3457		96.048	21.531	1	2096900			22620	5414	15586	15620	26232	26232					0.05164330574086762
HGGAKKRKK	9	Unmodified	_HGGAKKRKK_					0	0	0		ENST00000447672.1_1_9:75356163-75356322:-|nuORF	ENST00000447672.1_1_9:75356163-75356322:-|nuORF	ENST00000447672.1_1_9:75356163-75356322:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.32159423828125	2	505.322517	1008.63048	2.7128	0.0013708	-2.541	-0.001284	0.17178	8.6804E-05	505.32099759556615	18.545	0.69721	18.303	18.074	18.771	-0.24256					22	13	3	0	0	0	0.97516	1	299	299		25.45	10.786	1	117020			22621	14471	15587	15621	26233	26233					0.12651086139419476
HGGCGARAP	9	Unmodified	_HGGCGARAP_					0	0	0			REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.1946716308594	2	413.192854	824.371155	-0.034558	-1.4279E-05	1.8988	0.00078456	1.8642	0.00077028	413.1935403469831	82.942	2.1913	82.803	81.828	84.02	-0.1386					84	50	2	0	0	0	1.0051	1	10023	10023		19.36	1.0356	1	989030	+		22622	31669	15588	15622	26234	26234					-0.04805607814034829
HGGCGARAP	9	Unmodified	_HGGCGARAP_					0	0	0			REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	413.192854	824.371155	0.31519	0.00013023	0.72989	0.00030159	1.0451	0.00043182	413.1934052248926	82.956	2.1394	82.775	81.814	83.954	-0.18079	-0.060095	-0.00065627	NaN	19.36	110	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1297100	+		22623	31669	15588	15622							-0.04805607814034829
HGGCGARAP	9	Unmodified	_HGGCGARAP_					0	0	0			REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	413.192854	824.371155	-0.034558	-1.4279E-05	1.8988	0.00078456	1.8642	0.00077028	413.1935403469831	82.942	2.1913	82.803	81.828	84.02	-0.1386	-0.032416	0.00030967	NaN	19.36	84	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989030	+		22624	31669	15588	15622							-0.04805607814034829
HGGDGLAVANL	11	Unmodified	_HGGDGLAVANL_					0	0	0			REV__ENSG00000121410|ENST00000263100|A1BG	REV__ENSG00000121410|ENST00000263100|A1BG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7899475097656	2	512.26453	1022.51451	-0.97881	-0.00050141	3.7545	0.0019233	2.7757	0.0014219	512.2657787412306	43.833	0.37259	43.589	43.378	43.751	-0.2444					14	9	3	0	0	0	0.024787	1	4009	4009		20.837	0	1	133510	+		22625	22594	15589	15623	26235	26235					0.004150977780341236
HGGHVPML	8	Unmodified	_HGGHVPML_					0	0	0			REV__ENST00000293756.4_1_6:33714597-33714648:-|nuORF	REV__ENST00000293756.4_1_6:33714597-33714648:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2192077636719	2	424.215798	846.417042	0.67544	0.00028653	3.1432	0.0013334	3.8186	0.0016199	424.21820833570257	95.176	5.4327	95.054	90.795	96.228	-0.12251					196	127	3	0	0	0	1.0241	1	11755	11755		33.493	5.6107	1	388040	+		22626	29960	15590	15624	26236	26236					-0.01230962631791499
HGGPTRDL	8	Unmodified	_HGGPTRDL_					0	0	0		ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13	ENST00000272193.10_1_1:204085443-204095259:+|nuORF	ENST00000272193.10_1_1:204085443-204095259:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.7198486328125	2	426.719759	851.424964	0.67164	0.0002866	-0.30182	-0.00012879	0.36982	0.00015781	426.7194841583843	21.614	1.0015	21.437	21.065	22.066	-0.17721					40	20	4	0	0	0	0.95679	1	702	702		44.117	0	1	417550			22627	5693	15591	15625	26237	26237					-0.006691121106655373
HGGRVLAVT	9	Unmodified	_HGGRVLAVT_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;nc|ENSG00000159131|P22102-2|GART	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.2537536621094	2	455.266876	908.519199	1.0199	0.00046433	-1.4427	-0.00065683	-0.42282	-0.0001925	455.26606931369247	19.83	0.63824	19.596	19.325	19.963	-0.23345					19	12	2	0	0	0	0.024535	1	436	436		25.45	4.9683	1	33681			22628	6720	15592	15626	26238	26238					0.06128026711462553
HGGRVLAVT	9	Unmodified	_HGGRVLAVT_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;nc|ENSG00000159131|P22102-2|GART	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.266876	908.519199	0.32141	0.00014633	-0.36316	-0.00016533	-0.041741	-1.9003E-05	455.2664705512165	19.764	0.39387	19.603	19.331	19.725	-0.16079	0.0029594	0.00059352	NaN	25.45	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16982			22629	6720	15592	15626							0.06128026711462553
HGGRVLAVT	9	Unmodified	_HGGRVLAVT_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;nc|ENSG00000159131|P22102-2|GART	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	455.266876	908.519199	0.92597	0.00042157	-1.1253	-0.00051233	-0.19937	-9.0765E-05	455.265991570997	19.8	0.44535	19.6	19.355	19.801	-0.2001	0.00040408	-0.00010047	NaN	25.45	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31656			22630	6720	15592	15626							0.06128026711462553
HGIKLIEKMGL	11	Unmodified	_HGIKLIEKMGL_					0	0	0			REV__ENST00000519928.1_1_5:153431341-153431434:+|nuORF	REV__ENST00000519928.1_1_5:153431341-153431434:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8693237304688	2	619.868108	1237.72166	0.0094929	5.8843E-06	2.1366	0.0013244	2.1461	0.0013303	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	1.0292	1	12115	12115		30.318	2.4355	1	4373200	+		22631	34276	15593	15627	26239	26239					0.11231169001871422
HGIRSVGTAA	10	Unmodified	_HGIRSVGTAA_					0	0	0		ENSG00000133731|ENST00000256108|IMPA1;nc|ENSG00000133731|P29218-3|IMPA1	ENSG00000133731|ENST00000256108|IMPA1	ENSG00000133731|ENST00000256108|IMPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.76763916015625	2	484.76724	967.519927	-0.44207	-0.0002143	-0.2134	-0.00010345	-0.65547	-0.00031775	484.76705087840116	27.072	0.50498	26.904	26.638	27.142	-0.16816					38	11	4	0	0	0	0.62431	1	1452	1452		74.255	8.7897	1	2288700			22632	4727	15594	15628	26240	26240					0.03486821360513659
HGIVCPVK	8	Unmodified	_HGIVCPVK_					0	0	0			REV__ENST00000493232.5_1_7:2580116-2580524:-|nuORF	REV__ENST00000493232.5_1_7:2580116-2580524:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.7197570800781	2	426.741648	851.468743	-0.067924	-2.8986E-05	-2.8014	-0.0011955	-2.8694	-0.0012245	426.74242038916645	22.057	0.33413	21.866	21.613	21.947	-0.19072					11	6	2	0	0	0	0.027866	1	712	712		26.796	12.132	1	9121	+		22633	33759	15595	15629	26241	26241					0.03706781062101072
HGIVSPEV	8	Unmodified	_HGIVSPEV_					0	0	0			REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF	REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	419.3157958984375	2	419.226885	836.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.835	1	16.581	16.081	17.081	-0.25378								0	0	0	1.0652	1	87	87		15.636	0.97212	1		+		22634	28237	15596	15630	26242	26242					0.014455403176157233
HGKGRAIRL	9	Unmodified	_HGKGRAIRL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2976379394531	2	504.314692	1006.61483	0.070634	3.5622E-05	-3.6798	-0.0018558	-3.6091	-0.0018201	504.31274085435984	61.934	0.19291	61.707	61.534	61.727	-0.22663					8	4	2	0	0	0	0.024405	1	7157	7157		35.618	8.8222	1	142450			22635	8193	15597	15631	26243	26243					0.11178799622348379
HGKLLRKT	8	Unmodified	_HGKLLRKT_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.77166748046875	2	476.806168	951.597784	-0.27952	-0.00013328	-0.2766	-0.00013188	-0.55611	-0.00026516	476.8061439463005	35.778	0.55539	35.822	35.616	36.172	0.044056					36	14	4	0	0	0	0.027866	1	2780	2780		34.173	0	1	310340			22636	231	15598	15632	26244	26244					0.12004879016558334
HGLGLDWQL	9	Unmodified	_HGLGLDWQL_					0	0	0			REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7698974609375	2	519.771991	1037.52943	-1.2076	-0.00062766	-2.9401	-0.0015282	-4.1477	-0.0021558	519.7703466375854	35.629	0.78732	35.607	35.196	35.984	-0.021763					47	20	3	0	0	0	0.62163	1	2740	2740		51.335	3.6781	1	1781500	+		22637	20173	15599	15633	26245	26245					0.012165896460373915
HGLGRPGQN	9	Unmodified	_HGLGRPGQN_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.24468994140625	2	468.243932	934.473312	0.40243	0.00018843	1.3701	0.00064154	1.7725	0.00082997	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.72875	1	12856	12856		44.117	14.967	1	4364500	+		22638	24745	15600	15634	26246	26246					0.0034538152922323206
HGLIELCLA	9	Unmodified	_HGLIELCLA_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.7674255371094	2	484.76532	967.516088	-0.29812	-0.00014452	3.5924	0.0017415	3.2943	0.0015969	484.76706506055	27.242	0.67721	27	26.529	27.207	-0.24217					39	15	4	0	0	0	0.33184	2	1489	1489;1501		71.378	5.5176	1	2255200			22639	5030	15601	15635	26247;26248	26247					0.031030155424332406
HGLILRSQ	8	Unmodified	_HGLILRSQ_					0	0	0		nc|ENSG00000011021|P51797-5|CLCN6;nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7608642578125	2	462.274701	922.534849	-0.5507	-0.00025457	3.5255	0.0016297	2.9748	0.0013752	462.276700161654	48.953	0.69213	49.027	48.736	49.428	0.074196					38	18	3	0	0	0	0.027866	1	4957	4957		15.642	0	1	461940			22640	18033	15602	15636	26249	26249					0.070483132285176
HGLLSKQW	8	Unmodified	_HGLLSKQW_					0	0	0		nc|ENSG00000180347|Q6ZRS4-3|ITPRID1;ENSG00000180347|ENST00000615280|ITPRID1;nc|ENSG00000180347|Q6ZRS4-4|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.76739501953125	2	484.769252	967.52395	-0.44207	-0.0002143	-4.3625	-0.0021148	-4.8046	-0.0023291	484.76705087840116	27.072	0.50498	26.904	26.638	27.142	-0.16816					38	11	4	0	0	0	0.43637	1	1462	1462		92.191	7.2751	1	2288700			22641	8975	15603	15637	26250	26250					0.038889108542207396
HGLLWKVLDL	10	Unmodified	_HGLLWKVLDL_					0	0	0			REV__PRKDC|p.A1174G|1|0.55|ENSG00000253729|chr8:47897238-47897238|G/C|missense_variant	REV__PRKDC|p.A1174G|1|0.55|ENSG00000253729|chr8:47897238-47897238|G/C|missense_variant	MSMS	OPSCC_39_ClassI_Rep-3	3	597.3574829101562	2	597.355691	1192.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.98	1	90.992	90.492	91.492	0.011276								0	0	0	0.75601	1	11436	11436		26.693	1.1189	1		+		22642	37407	15604	15638	26251	26251					0.10818857190793096
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165893554688	2	545.317432	1088.62031	-0.6354	-0.0003465	-0.75836	-0.00041355	-1.3938	-0.00076004	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0616	1	11258	11258		37.812	7.3079	1	11705000	+		22643	28140	15605	15639	26252	26252					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.316650390625	2	545.317432	1088.62031	-0.23183	-0.00012642	-1.2024	-0.00065567	-1.4342	-0.00078209	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0992	1	11241	11241		32.812	4.7309	1	11601000	+		22644	28140	15605	15639	26253	26253					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3173828125	2	545.317432	1088.62031	-0.30487	-0.00016625	-1.2147	-0.00066239	-1.5196	-0.00082864	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	1.1307	1	11012	11012		26.693	0	1	3635800	+		22645	28140	15605	15639	26254	26254					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3163452148438	2	545.317432	1088.62031	-0.46982	-0.0002562	-1.0056	-0.00054839	-1.4754	-0.00080459	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0508	3	11182	11098;11182;11207		39.253	3.6248	1	12792000	+		22646	28140	15605	15639	26255;26256;26257	26256					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.316650390625	2	545.317432	1088.62031	-0.95668	-0.0005217	-0.29702	-0.00016197	-1.2537	-0.00068367	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0508	5	10933	10801;10873;10933;10981;10993		39.253	6.1772	1	15621000	+		22647	28140	15605	15639	26258;26259;26260;26261;26262	26260					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3167724609375	2	545.317432	1088.62031	0.29621	0.00016153	-1.7677	-0.00096396	-1.4715	-0.00080243	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.1088	3	10617	10617;10630;10678		31.53	3.6248	1	4888900	+		22648	28140	15605	15639	26263;26264;26265	26263					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165893554688	2	545.317432	1088.62031	-0.47781	-0.00026056	-0.87443	-0.00047684	-1.3522	-0.0007374	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0002	2	11130	11067;11130		45.972	7.4938	1	17400000	+		22649	28140	15605	15639	26266;26267	26267					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165283203125	2	545.317432	1088.62031	-0.4393	-0.00023956	-1.1099	-0.00060523	-1.5492	-0.00084479	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0616	1	10579	10579		37.812	2.6595	1	5204600	+		22650	28140	15605	15639	26268	26268					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-2|STK40	REV__nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3167724609375	2	545.317432	1088.62031	-0.30292	-0.00016519	-1.1181	-0.00060972	-1.421	-0.00077491	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.0616	3	10777	10777;10968;10993		37.812	2.6595	1	17068000	+		22651	28140	15605	15639	26269;26270;26271	26269					0.07954478414171717
HGLSRGPVA	9	Unmodified	_HGLSRGPVA_					0	0	0			REV__ENST00000309295.8_1_11:65343513-65343774:+|nuORF	REV__ENST00000309295.8_1_11:65343513-65343774:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.2513732910156	2	447.251226	892.487899	0.24368	0.00010899	-0.30128	-0.00013475	-0.057597	-2.576E-05	447.25106433833025	25.154	1.0066	25.235	24.916	25.922	0.08009					69	23	5	0	0	0	0.83071	1	1142	1142		37.159	0	1	3966200	+		22652	30159	15606	15640	26272	26272					0.037354536773818836
HGNLEKKQKLA	11	Unmodified	_HGNLEKKQKLA_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3690185546875	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	1.013	1	11827	11827		33.922	6.0394	1	3181800			22653	5703	15607	15641	26273	26273					0.10339555100085818
HGNLEKKQKLA	11	Unmodified	_HGNLEKKQKLA_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3693237304688	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	1.0183	1	11955	11955		32.751	3.5805	1	9528000			22654	5703	15607	15641	26274	26274					0.10339555100085818
HGNLEKKQKLA	11	Unmodified	_HGNLEKKQKLA_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.369140625	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.98542	1	11844	11844		40.058	6.1365	1	9845500			22655	5703	15607	15641	26275	26275					0.10339555100085818
HGNLEKKQKLA	11	Unmodified	_HGNLEKKQKLA_					0	0	0		nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	nc|ENSG00000143951|O95876-2|WDPCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.5818786621094	3	422.582333	1264.72517	0.051062	2.1578E-05	-0.96778	-0.00040897	-0.91672	-0.00038739	422.58183891194597	96.092	3.0594	95.935	94.749	97.808	-0.15646					209	69	4	0	0	0	1.0521	1	11950	11950		27.644	0	1	593240			22656	5703	15607	15641	26276	26276					0.10339555100085818
HGNQERVLA	9	Unmodified	_HGNQERVLA_					0	0	0			REV__MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3	REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.271484375	2	512.270147	1022.52574	0.53902	0.00027612	0.90867	0.00046548	1.4477	0.00074161	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	0.80658	1	13328	13328		38.806	7.2763	1	5030900	+		22657	36379;37160	15608	15642	26277	26277					0.01537919872191651
HGNRAAII	8	Unmodified	_HGNRAAII_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2461853027344	2	426.245944	850.477334	0.40347	0.00017198	-0.18382	-7.8353E-05	0.21965	9.3624E-05	426.24579574865595	86.946	2.1354	86.809	86.18	88.315	-0.13734					133	50	5	0	0	0	1.0239	1	10593	10593		33.516	8.0654	1	11262000	+		22658	26309	15609	15643	26278	26278					0.046114710229517186
HGPPAIIT	8	Unmodified	_HGPPAIIT_					0	0	0			REV__nc|ENSG00000091073|Q86UW9-2|DTX2	REV__nc|ENSG00000091073|Q86UW9-2|DTX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2012634277344	2	403.231971	804.449388	1.7066	0.00068817	2.0287	0.00081805	3.7354	0.0015062	403.2322811090454	20.296	1.5148	20.1	19.755	21.27	-0.19577					44	30	3	0	0	0	0.027866	1	575	575		19.36	0	1	42762	+		22659	20896	15610	15644	26279	26279					0.03934148042844754
HGPTFPIIRL	10	Unmodified	_HGPTFPIIRL_					0	0	0		ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	ENSG00000164099|ENST00000296498|PRSS12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8431396484375	2	575.840208	1149.66586	0.50468	0.00029062	4.3999	0.0025336	4.9045	0.0028242	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	1.1307	1	11245	11245		26.693	3.1702	1	1452500			22660	7212	15611	15645	26280	26280					0.09701703876544343
HGPTGSFK	8	Unmodified	_HGPTGSFK_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.7095947265625	2	415.711402	829.408252	-0.83536	-0.00034727	-3.931	-0.0016342	-4.7664	-0.0019814	415.7097107306702	26.257	2.915	26.021	25.803	28.718	-0.23603					131	72	3	0	0	0	1.0338	1	1386	1386		31.955	1.4512	1	12481000			22661	9485	15612	15646	26281	26281					-0.013276129966129702
HGQYLRRLRSL	11	Unmodified	_HGQYLRRLRSL_					0	0	0			REV__ENST00000472267.5_1_6:30587673-30593571:+|nuORF	REV__ENST00000472267.5_1_6:30587673-30593571:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.941162109375	3	466.940743	1397.8004	0.078137	3.6485E-05	3.4129	0.0015936	3.491	0.0016301	466.94247046824756	100.36	1.4715	100.37	100	101.47	0.010117					44	35	2	0	0	0	0.024734	1	12838	12838		16.53	0	1	434090	+		22662	28617	15613	15647	26282	26282					0.11741157351161746
HGRGCTAVI	9	Unmodified	_HGRGCTAVI_					0	0	0		nc|ENSG00000176659|Q8N268-2|LINC02910	nc|ENSG00000176659|Q8N268-2|LINC02910	nc|ENSG00000176659|Q8N268-2|LINC02910	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.25830078125	2	457.237261	912.45997	-0.5385	-0.00024622	-3.699	-0.0016913	-4.2375	-0.0019375	457.23576887411946	33.03	0.26663	33.037	32.888	33.154	0.0066261					11	6	3	0	0	0	0.024323	1	2311	2311		35.618	24.107	1	44366			22663	18539	15614	15648	26283	26283					0.0002380742562309024
HGRGCTAVI	9	Unmodified	_HGRGCTAVI_					0	0	0		nc|ENSG00000176659|Q8N268-2|LINC02910	nc|ENSG00000176659|Q8N268-2|LINC02910	nc|ENSG00000176659|Q8N268-2|LINC02910	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.237261	912.45997	-0.71453	-0.00032671	-1.507	-0.00068904	-2.2215	-0.0010158	457.23541867333756	33.235	0.11877	33.069	32.998	33.117	-0.16565	0.016121	9.344E-05	NaN	35.618	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42181			22664	18539	15614	15648							0.0002380742562309024
HGRLAPLVG	9	Unmodified	_HGRLAPLVG_					0	0	0			REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.2770690917969	2	460.277244	918.539935	0.045082	2.075E-05	-0.16484	-7.5874E-05	-0.11976	-5.5123E-05	460.27712185553986	20.34	0.87331	20.172	19.669	20.542	-0.16774					44	17	3	0	0	0	1.0051	1	541	541		19.36	0	1	269550	+		22665	35819	15615	15649	26284	26284					0.07740617091121749
HGRLAPVT	8	Unmodified	_HGRLAPVT_					0	0	0			REV__ENST00000482659.2_1_11:70935768-70951917:-|nuORF	REV__ENST00000482659.2_1_11:70935768-70951917:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.74835205078125	2	425.748319	849.482085	-0.54844	-0.0002335	0.61594	0.00026223	0.067499	2.8738E-05	425.7485324250809	26.154	1.304	26.131	25.82	27.124	-0.023088					73	31	3	0	0	0	0.99042	1	1312	1312		38.806	8.3025	1	4991500	+		22666	33488	15616	15650	26285	26285					0.051323551656992095
HGRQAPGLSQ	10	Unmodified	_HGRQAPGLSQ_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3049926757812	2	525.775597	1049.53664	-0.37706	-0.00019825	3.0756	0.0016171	2.6986	0.0014188	525.7770995311719	70.42	0.78567	70.148	69.447	70.232	-0.27185					30	18	3	0	0	0	0.03519	1	8141	8141		31.53	4.8369	1	407450			22667	1277	15617	15651	26286	26286					0.01385322246483156
HGRVLGQA	8	Unmodified	_HGRVLGQA_					0	0	0			REV__ENST00000561734.5_1_16:835204-835471:-|nuORF	REV__ENST00000561734.5_1_16:835204-835471:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	419.5777893066406	2	419.238119	836.461684	0.34993	0.0001467	0.36151	0.00015156	0.71144	0.00029826	419.2380212846584	21.109	0.34408	21.18	21.008	21.352	0.071487					9	6	2	0	0	0	0.027866	1	595	595		18.324	14.008	1	19608	+		22668	35179	15618	15652	26287	26287					0.03691184505885303
HGRVLGQA	8	Unmodified	_HGRVLGQA_					0	0	0			REV__ENST00000561734.5_1_16:835204-835471:-|nuORF	REV__ENST00000561734.5_1_16:835204-835471:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	419.238119	836.461684	-0.27366	-0.00011473	-0.1957	-8.2045E-05	-0.46936	-0.00019677	419.2380012131147	21.191	0.2945	21.101	20.961	21.255	-0.090094	-0.039682	-0.00023428	NaN	12.207	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14469	+		22669	35179	15618	15652							0.03691184505885303
HGSAGSQKRI	10	Unmodified	_HGSAGSQKRI_					0	0	0			REV__ENSG00000177291|ENST00000321660|GJD4	REV__ENSG00000177291|ENST00000321660|GJD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7846069335938	2	520.783422	1039.55229	-0.065214	-3.3962E-05	1.6553	0.00086208	1.5901	0.00082811	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	1.0002	1	13589	13589		45.972	7.1661	1	7303900	+		22670	27100	15619	15653	26288	26288					0.03409608763513461
HGSIRGVKD	9	Unmodified	_HGSIRGVKD_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.7682189941406	2	484.76724	967.519927	-0.29812	-0.00014452	-0.3681	-0.00017844	-0.66622	-0.00032296	484.76706506055	27.242	0.67721	27	26.529	27.207	-0.24217					39	15	4	0	0	0	0.34489	1	1478	1478		69.628	3.1983	1	2255200			22671	3397	15620	15654	26289	26289					0.034868213605250276
HGSSGPVRR	9	Unmodified	_HGSSGPVRR_					0	0	0			REV__ENST00000487143.5_1_2:168812008-168969496:-|nuORF	REV__ENST00000487143.5_1_2:168812008-168969496:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.75775146484375	2	476.757207	951.499861	0.37525	0.0001789	1.3395	0.0006386	1.7147	0.0008175	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.85329	1	13201	13201		35.618	6.4687	1	4565500	+		22672	28444	15621	15655	26290	26290					0.022170704205677794
HGTIKNQL	8	Unmodified	_HGTIKNQL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.7590026855469	2	455.758884	909.503215	0.37909	0.00017277	-0.24419	-0.00011129	0.13489	6.1479E-05	455.758613318241	23.465	1.2635	23.263	22.967	24.231	-0.20193					50	28	3	0	0	0	0.32162	1	926	926		108.09	31.313	1	999240			22673	5920	15622	15656	26291	26291					0.04484320474546166
HGTIKNQL	8	Unmodified	_HGTIKNQL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.75872802734375	2	455.758884	909.503215	-0.34543	-0.00015743	0.5636	0.00025687	0.21818	9.9436E-05	455.7589695387917	23.441	1.1192	23.261	22.883	24.002	-0.17989					51	25	3	0	0	0	0.26064	1	924	924		128.86	48.922	1	1232000			22674	5920	15622	15656	26292	26292					0.04484320474546166
HGTIKNQL	8	Unmodified	_HGTIKNQL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.7590637207031	2	455.758884	909.503215	1.7974	0.0008192	-1.7194	-0.00078365	0.077999	3.5549E-05	455.7579238038658	23.408	0.89582	23.217	22.942	23.838	-0.19117					41	20	3	0	0	0	0.26064	1	894	894		128.86	48.922	1	1176700			22675	5920	15622	15656	26293	26293					0.04484320474546166
HGTLIIGLYL	10	Unmodified	_HGTLIIGLYL_					0	0	0			REV__ENST00000435469.2_1_17:66099171-66110645:+|nuORF	REV__ENST00000435469.2_1_17:66099171-66110645:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.32666015625	2	550.329142	1098.64373	-0.26348	-0.000145	-4.1347	-0.0022755	-4.3982	-0.0024205	550.3279305908578	98.909	1.0484	98.919	98.397	99.446	0.010231					50	23	3	0	0	0	1.0665	1	12631	12631		37.159	8.0096	1	216050	+		22676	32438	15623	15657	26294	26294					0.09835479408116043
HGTLLRST	8	Unmodified	_HGTLLRST_					0	0	0		TBC1D22A-GCAT|2|fusion;TBC1D22A-GCAT|1|fusion;ENSG00000054611|ENST00000337137|TBC1D22A	TBC1D22A-GCAT|2|fusion	TBC1D22A-GCAT|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.7348937988281	2	442.751059	883.487565	0.061048	2.7029E-05	-3.5344	-0.0015648	-3.4733	-0.0015378	442.74966489280365	23.443	0.41925	23.241	23.061	23.48	-0.20193					14	9	2	0	0	0	0.027866	1	928	928		31.955	7.7521	1	31240			22677	38059	15624	15658	26295	26295					0.0411603395750717
HGTLPRWLI	9	Unmodified	_HGTLPRWLI_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.821533203125	2	546.819276	1091.624	-1.4479	-0.00079176	3.5953	0.001966	2.1473	0.0011742	546.8219583750024	64.601	1.0866	64.338	63.864	64.95	-0.2626					78	28	4	0	0	0	0.70186	1	7583	7583		45.952	3.4775	1	7472700	+		22678	20260	15625	15659	26296	26296					0.0818514818802214
HGTVLYAYL	9	Unmodified	_HGTVLYAYL_					0	0	0			REV__sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	REV__sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7698364257812	2	518.776742	1035.53893	-1.1019	-0.00057164	0.44433	0.00023051	-0.65758	-0.00034114	518.7767405341635	21.326	2.4194	21.326	20.704	23.123	0					111	50	3	0	0	0	0.024443	1	750	750		26.796	1.222	1	165210	+		22679	37559	15626	15660	26297	26297					0.022583579315323732
HGVLKITICK	10	Unmodified	_HGVLKITICK_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.3048706054688	2	556.336444	1110.65834	-1.2966	-0.00072133	4.4203	0.0024592	3.1237	0.0017378	556.3388166626188	21.208	0.29636	20.996	20.773	21.069	-0.2128					8	5	2	0	0	0	0.03519	1	622	622		14.137	4.4315	1	18463			22680	8371	15627	15661	26298	26298					0.10743228284627548
HGVRALIRAN	10	Unmodified	_HGVRALIRAN_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8299560546875	2	553.830706	1105.64686	-0.078213	-4.3317E-05	-1.2618	-0.0006988	-1.34	-0.00074212	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0393	2	11241	11204;11241		40.778	5.1599	1	4896800	+		22681	24379	15628	15662	26299;26300	26300					0.09826167305527633
HGVRALIRAN	10	Unmodified	_HGVRALIRAN_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8300170898438	2	553.830706	1105.64686	0.11487	6.3616E-05	-1.4647	-0.00081117	-1.3498	-0.00074756	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0781	1	11176	11176		35.618	1.4457	1	4870500	+		22682	24379	15628	15662	26301	26301					0.09826167305527633
HGVRALIRAN	10	Unmodified	_HGVRALIRAN_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8300170898438	2	553.830706	1105.64686	-0.79305	-0.00043922	-0.54011	-0.00029913	-1.3332	-0.00073835	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0781	1	10850	10850		35.618	7.5368	1	6583300	+		22683	24379	15628	15662	26302	26302					0.09826167305527633
HGVYVLISN	9	Unmodified	_HGVYVLISN_					0	0	0			REV__ENSG00000165102|ENST00000379644|HGSNAT	REV__ENSG00000165102|ENST00000379644|HGSNAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29071044921875	2	501.274367	1000.53418	0.52213	0.00026173	-2.5524	-0.0012794	-2.0302	-0.0010177	501.27408078533745	86.746	0.34071	86.604	86.538	86.879	-0.14217					10	7	2	0	0	0	0.024436	1	10552	10552		47.916	25.956	1	39872	+		22684	25838	15629	15663	26303	26303					0.03393473788810297
HGWKESLL	8	Unmodified	_HGWKESLL_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77703857421875	2	485.261259	968.507966	-1.3928	-0.00067589	-1.5918	-0.00077244	-2.9846	-0.0014483	485.26015689532795	29.458	1.3187	29.458	28.778	30.096	0					75	32	4	0	0	0	0.027866	1	1883	1883		35.201	9.7505	1	888220			22685	8414;18525	15630	15664	26304	26304					0.022452046173384588
HGYGPVVRG	9	Unmodified	_HGYGPVVRG_					0	0	0			REV__ENSG00000062485|ENST00000351328|CS	REV__ENSG00000062485|ENST00000351328|CS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.2513732910156	2	471.251226	940.487899	-0.016099	-7.5867E-06	1.2446	0.00058653	1.2285	0.00057895	471.251098890163	27.681	1.7934	27.439	26.372	28.165	-0.24217					106	42	5	0	0	0	0.60698	1	1562	1562		52.299	7.7681	1	599840	+		22686	20264	15631	15665	26305	26305					0.015274536773858927
HGYKAVKEA	9	Unmodified	_HGYKAVKEA_					0	0	0		ENSG00000130649|ENST00000252945|CYP2E1	ENSG00000130649|ENST00000252945|CYP2E1	ENSG00000130649|ENST00000252945|CYP2E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7538146972656	2	501.771991	1001.52943	-0.53764	-0.00026977	0.10737	5.3875E-05	-0.43028	-0.0002159	501.7726207589041	30.977	0.3632	30.794	30.662	31.025	-0.18298					14	8	2	0	0	0	0.024457	1	2011	2011		29.15	6.1071	1	185440			22687	4435	15632	15666	26306	26306					0.02872589646040069
HGYKAVKEA	9	Unmodified	_HGYKAVKEA_					0	0	0		ENSG00000130649|ENST00000252945|CYP2E1	ENSG00000130649|ENST00000252945|CYP2E1	ENSG00000130649|ENST00000252945|CYP2E1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.771991	1001.52943	-0.32623	-0.00016369	-0.10346	-5.1912E-05	-0.42969	-0.00021561	501.7709669252666	31.123	0.32031	30.882	30.753	31.073	-0.24109	0.017603	-0.00053106	NaN	42.396	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162410			22688	4435	15632	15666							0.02872589646040069
HGYVKQSL	8	Unmodified	_HGYVKQSL_					0	0	0		ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2533264160156	2	466.253434	930.492316	-0.61148	-0.0002851	0.38096	0.00017762	-0.23052	-0.00010748	466.2534299361627	26.63	1.5774	26.394	26.067	27.644	-0.23603					142	38	7	0	0	0	0.4075	3	1434	1398;1414;1434		96.19	22.292	1	12849000			22689	3439	15633	15667	26307;26308;26309	26309					0.024289181002814075
HGYVKQSL	8	Unmodified	_HGYVKQSL_					0	0	0		ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.25311279296875	2	466.253434	930.492316	-0.1944	-9.064E-05	-0.22801	-0.00010631	-0.42241	-0.00019695	466.2532069335348	26.386	1.9194	26.218	25.928	27.847	-0.16816					106	47	4	0	0	0	0.44658	4	1342	1342;1354;1372;1391		90.777	22.292	1	12313000			22690	3439	15633	15667	26310;26311;26312;26313	26310					0.024289181002814075
HGYVKQSL	8	Unmodified	_HGYVKQSL_					0	0	0		ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.25347900390625	2	466.253434	930.492316	-0.91472	-0.00042649	0.53085	0.00024751	-0.38387	-0.00017898	466.2535296619877	26.563	1.8044	26.399	26.069	27.873	-0.16331					126	44	5	0	0	0	0.4075	5	1349	1349;1360;1371;1384;1396		96.19	27.706	1	13147000			22691	3439	15633	15667	26314;26315;26316;26317;26318	26314					0.024289181002814075
HHEILASS	8	Unmodified	_HHEILASS_					0	0	0			REV__nc|ENSG00000176293|P52742-2|ZNF135	REV__nc|ENSG00000176293|P52742-2|ZNF135	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2513122558594	2	447.227417	892.44028	-0.51756	-0.00023147	3.4092	0.0015247	2.8917	0.0012932	447.22950213875293	24.941	0.74729	24.941	24.697	25.445	0					26	17	3	0	0	0	0.027866	1	1195	1195		40.573	15.122	1	99319	+		22692	27012	15634	15668	26319	26319					-0.010242453134651441
HHEILASS	8	Unmodified	_HHEILASS_					0	0	0			REV__nc|ENSG00000176293|P52742-2|ZNF135	REV__nc|ENSG00000176293|P52742-2|ZNF135	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	447.227417	892.44028	-0.89702	-0.00040117	4.7527	0.0021256	3.8557	0.0017244	447.22961268271024	24.96	0.47406	24.925	24.727	25.201	-0.034395	-0.0079644	0.00019695	NaN	40.573	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136100	+		22693	27012	15634	15668							-0.010242453134651441
HHFEQMLKL	9	Unmodified	_HHFEQMLKL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.8115844726562	2	591.808051	1181.60155	1.3439	0.00079532	4.1849	0.0024766	5.5288	0.003272	591.8104171066905	96.501	1.0438	96.503	96.194	97.237	0.0020676					67	23	4	0	0	0	0.18915	1	12259	12259		90.777	8.0262	1	919760			22694	3304	15635	15669	26320	26320					0.01801180728102736
HHFHLSAS	8	Unmodified	_HHFHLSAS_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2448425292969	2	468.227751	934.440949	-0.34092	-0.00015963	2.2396	0.0010486	1.8987	0.000889	468.2285869069883	103.02	0.12277	103.02	102.96	103.08	0					4	2	2	0	0	0	0.027866	1	13213	13213		19.36	0	1	44581			22695	5591	15636	15670	26321	26321					-0.028894058737591877
HHFRKILIAM	10	Unmodified	_HHFRKILIAM_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3692626953125	2	633.36861	1264.72267	-0.36915	-0.00023381	1.2514	0.0007926	0.88225	0.00055879	633.3692856842331	93.247	1.3144	93.125	92.182	93.497	-0.12215					76	30	4	0	0	0	1.1166	1	11448	11448		30.504	3.8107	1	1726300	+		22696	24336	15637	15671	26322	26322					0.10089428161450087
HHGFCSQMMVW	11	Unmodified	_HHGFCSQMMVW_					0	0	0			REV__ENSG00000181788|ENST00000312960|SIAH2	REV__ENSG00000181788|ENST00000312960|SIAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.7582092285156	3	454.856194	1361.54675	-0.42108	-0.00019153	0.73128	0.00033263	0.3102	0.0001411	454.8568616659796	33.601	0.23144	33.4	33.286	33.517	-0.20019					7	5	2	0	0	0	0.024801	1	2393	2393		17.833	1.9125	1	73181	+		22697	27426	15638	15672	26323	26323					-0.11955897406483018
HHGLEQFCL	9	Unmodified	_HHGLEQFCL_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2587890625	2	542.255651	1082.49675	4.5732	0.0024799	1.313	0.00071197	5.8862	0.0031918	542.2562900887689	17.18	0.25184	17.241	17.127	17.379	0.06036					11	7	2	0	0	0	0.98697	1	113	113		23.042	0	1	40839	+		22698	23353	15639	15673	26324	26324					-0.041199407484555195
HHGPYRKP	8	Unmodified	_HHGPYRKP_					0	0	0			REV__HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|6|2|sense	REV__HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|6|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7613220214844	2	496.264668	990.514782	0.50351	0.00024988	2.0529	0.0010188	2.5564	0.0012686	496.2653629199909	41.219	0.92137	41.219	40.871	41.793	0					47	25	4	0	0	0	0.027866	1	3764	3764		46.766	16.925	1	1433800	+		22699	36114	15640	15674	26325	26325					0.01914562288561683
HHHHLMPT	8	Unmodified	_HHHHLMPT_					0	0	0		ENST00000602307.5_1_3:47454690-47454903:+|nuORF	ENST00000602307.5_1_3:47454690-47454903:+|nuORF	ENST00000602307.5_1_3:47454690-47454903:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2811584472656	2	505.242878	1008.4712	0.16231	8.2006E-05	3.799	0.0019194	3.9613	0.0020014	505.74808918164285	93.928	0.39063	93.806	93.625	94.016	-0.12215					12	8	2	0	0	0	0.027866	1	11563	11563		46.766	9.738	1	36673			22700	17523	15641	15675	26326	26326					-0.03269370480234102
HHHPHFLR	8	Unmodified	_HHHPHFLR_					0	0	0			REV__EIF2AK3|p.P548H|1|0.39|ENSG00000172071|chr2:88585848-88585848|G/T|missense_variant	REV__EIF2AK3|p.P548H|1|0.39|ENSG00000172071|chr2:88585848-88585848|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.8001708984375	2	540.783559	1079.55256	-0.43402	-0.00023471	-0.84152	-0.00045508	-1.2755	-0.00068979	540.7828746313019	33.85	1.4637	33.626	33.321	34.785	-0.22412					70	36	4	0	0	0	0.027866	1	2558	2558		21.702	0	1	741820	+		22701	19738	15642	15676	26327	26327					0.015970732740242966
HHKAPMLIL	9	Unmodified	_HHKAPMLIL_					0	0	0			REV__ENSG00000114923|ENST00000358055|SLC4A3	REV__ENSG00000114923|ENST00000358055|SLC4A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7590942382812	2	530.310229	1058.60591	0.29981	0.00015899	-1.7217	-0.00091301	-1.4218	-0.00075402	530.3094224373789	96.634	0.96791	96.64	96.311	97.279	0.0065002					33	21	3	0	0	0	0.024412	1	12306	12306		40.573	3.4135	1	141660	+		22702	22155	15643	15677	26328	26328					0.07894689941690558
HHKEDTLR	8	Unmodified	_HHKEDTLR_					0	0	0		ENST00000469412.5_1_21:32585686-32624433:-|nuORF;nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	ENST00000469412.5_1_21:32585686-32624433:-|nuORF	ENST00000469412.5_1_21:32585686-32624433:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2699584960938	2	518.270147	1034.52574	-0.045757	-2.3714E-05	-0.33538	-0.00017382	-0.38114	-0.00019753	518.2698780971842	25.548	0.53729	25.377	25.122	25.659	-0.17078					23	12	2	0	0	0	0.97924	1	1213	1213		40.573	0	1	1957600			22703	6521	15644	15678	26329	26329					0.009859198721869689
HHKKRRKEK	9	Unmodified	_HHKKRRKEK_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2315979003906	3	416.258295	1245.75306	0.41062	0.00017092	2.4019	0.0009998	2.8125	0.0011707	416.2593255495747	20.95	0.34328	20.754	20.632	20.975	-0.19577					9	6	2	0	0	0	0.024438	1	604	604		29.17	0	1	14954			22704	3389	15645	15679	26330	26330					0.14000922870832255
HHLHAQIEI	9	Unmodified	_HHLHAQIEI_					0	0	0			REV__nc|ENSG00000178999|Q96GD4-4|AURKB	REV__nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2459106445312	2	549.296165	1096.57778	-0.14574	-8.0053E-05	0.70887	0.00038938	0.56314	0.00030933	549.2965361992972	78.349	0.55647	78.193	77.827	78.383	-0.15591					25	12	3	0	0	0	0.024436	1	9334	9334		30.504	0	1	480660	+		22705	27224	15646	15680	26331	26331					0.033350832859241564
HHLPHETSRLE	11	Unmodified	_HHLPHETSRLE_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.5654602050781	3	452.565342	1354.6742	1.8136	0.00082076	-2.1022	-0.00095139	-0.28865	-0.00013063	452.5644125482161	19.236	1.4254	19.003	18.632	20.057	-0.23345					93	28	6	0	0	0	1.0123	1	360	360		34.087	5.5098	1	1058600			22706	6328	15647	15681	26332	26332					0.011046060552416748
HHLRPALL	8	Unmodified	_HHLRPALL_					0	0	0			REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2837829589844	2	478.793061	955.571569	0.070255	3.3637E-05	-1.069	-0.00051184	-0.99876	-0.0004782	478.7922907168242	79.041	0.50022	78.869	78.568	79.069	-0.17225					25	11	3	0	0	0	0.027866	1	9775	9775		29.842	0	1	327190	+		22707	29512	15648	15682	26333	26333					0.09200609845083818
HHLRPALL	8	Unmodified	_HHLRPALL_					0	0	0			REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.793061	955.571569	0.38741	0.00018549	-1.6155	-0.00077351	-1.2281	-0.00058802	478.7921381364844	78.857	0.50385	78.857	78.573	79.077	0	0.06764	-0.00018173	NaN	46.766	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374780	+		22708	29512	15648	15682							0.09200609845083818
HHLRPALL	8	Unmodified	_HHLRPALL_					0	0	0			REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.793061	955.571569	0.63377	0.00030344	-1.6722	-0.00080062	-1.0384	-0.00049718	478.79208587389894	79.005	0.34186	78.75	78.514	78.856	-0.25471	-0.03877	-0.00023595	NaN	46.766	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67270	+		22709	29512	15648	15682							0.09200609845083818
HHLRPALL	8	Unmodified	_HHLRPALL_					0	0	0			REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.793061	955.571569	0.17052	8.1645E-05	-1.2854	-0.00061544	-1.1149	-0.0005338	478.7922141903905	78.912	0.34391	78.681	78.476	78.82	-0.23141	-0.10807	0.00013441	NaN	46.766	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64011	+		22710	29512	15648	15682							0.09200609845083818
HHLRPALL	8	Unmodified	_HHLRPALL_					0	0	0			REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	REV__ENST00000252675.6_1_19:5866654-5867368:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.793061	955.571569	0.26039	0.00012467	-1.5911	-0.00076181	-1.3307	-0.00063714	478.79208679225366	78.852	0.38608	78.696	78.47	78.856	-0.15592	-0.092852	-0.00015833	NaN	46.766	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57968	+		22711	29512	15648	15682							0.09200609845083818
HHLVHPAII	9	Unmodified	_HHLVHPAII_					0	0	0		ENST00000519902.1_1_8:26237308-26237995:-|nuORF	ENST00000519902.1_1_8:26237308-26237995:-|nuORF	ENST00000519902.1_1_8:26237308-26237995:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2421875	2	518.806168	1035.59778	-1.1167	-0.00057935	-0.68359	-0.00035465	-1.8003	-0.00093401	518.8055961181591	68.819	0.74055	68.557	68.26	69.001	-0.26166					36	17	3	0	0	0	0.024475	1	7998	7998		39.021	11.139	1	1098100			22712	15965	15649	15683	26334	26334					0.08140879016559666
HHLVPGPG	8	Unmodified	_HHLVPGPG_					0	0	0			REV__ENST00000569575.5_3_16:667265-675448:+|nuORF	REV__ENST00000569575.5_3_16:667265-675448:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.73480224609375	2	407.221937	812.429321	-0.055202	-2.2479E-05	3.5669	0.0014525	3.5117	0.00143	407.22328123353475	22.431	0.23068	22.245	22.094	22.325	-0.18539					6	4	2	0	0	0	0.027866	1	778	778		10.185	0	1	11849	+		22713	35373	15650	15684	26335	26335					0.01560397102900879
HHMIDMNQS	9	Unmodified	_HHMIDMNQS_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.8161010742188	2	556.734225	1111.4539	0.72279	0.0004024	-1.0137	-0.00056436	-0.29091	-0.00016196	556.733567391676	20.585	0.44432	20.389	20.236	20.681	-0.19577					11	8	2	0	0	0	0.024511	1	546	546		25.574	0.12388	1	22818	+		22714	26015	15651	15685	26336	26336					-0.09737078868192839
HHMIDMNQS	9	Unmodified	_HHMIDMNQS_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.734225	1111.4539	-0.35434	-0.00019728	-0.4255	-0.00023689	-0.77985	-0.00043417	556.733811597374	20.085	0.34455	20.085	19.929	20.274	0	-0.18496	-0.00014317	NaN	25.574	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15173	+		22715	26015	15651	15685							-0.09737078868192839
HHMIDMNQS	9	Unmodified	_HHMIDMNQS_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	556.734225	1111.4539	-0.67697	-0.00037689	0.1396	7.7722E-05	-0.53737	-0.00029917	556.7341769867755	20.373	0.44255	20.268	20.079	20.522	-0.10477	-0.0020438	0.00048606	NaN	25.574	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21332	+		22716	26015	15651	15685							-0.09737078868192839
HHMMQSSI	8	Oxidation (M)	_HHMM(Oxidation (M))QSSI_		HHM(0.079)M(0.921)QSSI		HHM(-11)M(11)QSSI	0	0	1			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7852783203125	2	493.712762	985.410971	-0.102	-5.0361E-05	-1.46	-0.00072082	-1.562	-0.00077118	493.71192657272877	42.039	2.2386	42.066	40.767	43.005	0.026012					97	63	2	0	0	0	0.027866	1	3686	3686		68.485	7.5128	2	297720	+		22717	24371	15652	15686	26337	26337		725			-0.08231848925618124
HHRLALHK	8	Unmodified	_HHRLALHK_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8044128417969	2	506.301585	1010.58862	0.06475	3.2783E-05	0.37063	0.00018765	0.43538	0.00022043	506.8036964185301	18.47	0.68724	18.339	18.056	18.743	-0.13147					43	13	5	0	0	0	0.88442	1	268	268		52.299	11.521	1	354880			22718	1460	15653	15687	26338	26338					0.08374530450885231
HHRRPIYRQYA	11	Unmodified	_HHRRPIYRQYA_					0	0	0			REV__ENST00000394597.6_1_17:33390695-33390797:-|nuORF	REV__ENST00000394597.6_1_17:33390695-33390797:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.6046142578125	3	499.604242	1495.7909	-0.55021	-0.00027489	0.93892	0.00046909	0.38871	0.0001942	499.6046755416096	56.182	0.77947	56.026	55.713	56.492	-0.15655					65	19	5	0	0	0	1.0371	1	6066	6066		28.577	0.19296	1	4098800	+		22719	31671	15654	15688	26339	26339					0.06283389065652045
HHRRPIYRQYA	11	Unmodified	_HHRRPIYRQYA_					0	0	0			REV__ENST00000394597.6_1_17:33390695-33390797:-|nuORF	REV__ENST00000394597.6_1_17:33390695-33390797:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.6046447753906	3	499.604242	1495.7909	0.097972	4.8947E-05	0.20506	0.00010245	0.30303	0.0001514	499.6043597433759	56.201	0.72645	55.985	55.702	56.429	-0.21607					60	18	5	0	0	0	1.0327	1	6078	6078		29.551	0	1	3615600	+		22720	31671	15654	15688	26340	26340					0.06283389065652045
HHSVGRPL	8	Unmodified	_HHSVGRPL_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2718200683594	2	451.751393	901.488233	0.28827	0.00013023	-2.9865	-0.0013492	-2.6982	-0.0012189	451.7504807265739	56.641	0.54908	56.416	56.189	56.738	-0.2248					31	13	3	0	0	0	0.027866	1	6157	6157		55.504	5.4797	1	334450	+		22721	26690	15655	15689	26341	26341					0.03354873397245228
HHSVGRPL	8	Unmodified	_HHSVGRPL_					0	0	0			REV__ENSG00000172578|ENST00000341319|KLHL6	REV__ENSG00000172578|ENST00000341319|KLHL6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.751393	901.488233	0.058356	2.6362E-05	-2.7818	-0.0012567	-2.7234	-0.0012303	451.7505838161121	56.561	0.70958	56.394	56.041	56.751	-0.1672	-0.022513	0.00024301	NaN	29.15	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417880	+		22722	26690	15655	15689							0.03354873397245228
HHTEFVSILCI	11	Carbamidomethyl (C)	_HHTEFVSILC(Carbamidomethyl (C))I_	HHTEFVSILC(1)I		HHTEFVSILC(52)I		0	1	0			REV__CYP4F3|p.G426E|1|0.04|ENSG00000186529|chr19:15658518-15658518|G/A|missense_variant	REV__CYP4F3|p.G426E|1|0.04|ENSG00000186529|chr19:15658518-15658518|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.5654296875	3	452.564062	1354.67036	3.3875	0.0015331	-0.69738	-0.00031561	2.6901	0.0012175	452.56371634409527	18.921	0.98531	18.984	18.747	19.732	0.063307					56	19	4	0	0	0	0.90172	2	305	305;316		51.528	14.02	1	358420	+		22723	19645	15656	15690	26342;26343	26342	248				0.007208002371726252
HHTEFVSILCI	11	Carbamidomethyl (C)	_HHTEFVSILC(Carbamidomethyl (C))I_	HHTEFVSILC(1)I		HHTEFVSILC(60)I		0	1	0			REV__CYP4F3|p.G426E|1|0.04|ENSG00000186529|chr19:15658518-15658518|G/A|missense_variant	REV__CYP4F3|p.G426E|1|0.04|ENSG00000186529|chr19:15658518-15658518|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.5653991699219	3	452.564062	1354.67036	0.6819	0.0003086	1.8725	0.00084742	2.5544	0.001156	452.56493469803314	19.113	0.98831	18.953	18.639	19.627	-0.16079					67	19	5	0	0	0	0.76305	1	388	388		59.931	18.851	1	1408400	+		22724	19645	15656	15690	26344	26344	248				0.007208002371726252
HHTEFVSILCI	11	Carbamidomethyl (C)	_HHTEFVSILC(Carbamidomethyl (C))I_	HHTEFVSILC(1)I		HHTEFVSILC(58)I		0	1	0			REV__CYP4F3|p.G426E|1|0.04|ENSG00000186529|chr19:15658518-15658518|G/A|missense_variant	REV__CYP4F3|p.G426E|1|0.04|ENSG00000186529|chr19:15658518-15658518|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.5653991699219	3	452.564062	1354.67036	0.65229	0.0002952	2.015	0.00091193	2.6673	0.0012071	452.56495218204753	19.238	1.235	19.038	18.662	19.897	-0.2001					90	24	6	0	0	0	0.79085	1	383	383		58.246	10.058	1	1142300	+		22725	19645	15656	15690	26345	26345	248				0.007208002371726252
HHVVLDGHL	9	Unmodified	_HHVVLDGHL_					0	0	0		nc|ENSG00000157927|Q96JH8-3|RADIL;ENST00000472999.5_1_7:4839011-4843599:-|nuORF;nc|ENSG00000157927|Q96JH8-2|RADIL;nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7769775390625	2	513.777608	1025.54066	-0.12485	-6.4143E-05	-1.9879	-0.0010213	-2.1127	-0.0010855	513.7755134328837	102.48	0.86111	102.49	102.11	102.97	0.0073471					45	20	4	0	0	0	0.4855	1	13097	13097		60.294	19.516	1	538080			22726	6632	15657	15691	26346	26346					0.02891411740165495
HHYNLKCL	8	Unmodified	_HHYNLKCL_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.286865234375	2	514.260736	1026.50692	0.38768	0.00019937	-2.3188	-0.0011924	-1.9311	-0.00099307	514.2594544198749	71.894	0.60131	71.606	71.273	71.875	-0.28858					28	15	2	0	0	0	0.027866	1	8732	8732		28.254	0	1	186200			22727	1286	15658	15692	26347	26347					-0.005273330232284934
HIALLLFPL	9	Unmodified	_HIALLLFPL_					0	0	0			REV__ENSG00000107140|ENST00000336395|TESK1	REV__ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2977905273438	2	518.83132	1035.64809	-0.78976	-0.00040975	0.7403	0.00038409	-0.049464	-2.5663E-05	518.8319792088428	102.58	0.36964	102.58	102.44	102.81	0					12	8	2	0	0	0	0.024389	1	13177	13177		21.702	1.2205	1	103870	+		22728	21654	15659	15693	26348	26348					0.13168988621691824
HIALLLFPL	9	Unmodified	_HIALLLFPL_					0	0	0			REV__ENSG00000107140|ENST00000336395|TESK1	REV__ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2974243164062	2	518.83132	1035.64809	-0.18351	-9.521E-05	-2.1821	-0.0011322	-2.3656	-0.0012274	518.8299872223866	102.68	0.32195	102.68	102.46	102.78	0.0056686					11	7	2	0	0	0	0.024389	1	13094	13094		29.842	0	1	181270	+		22729	21654	15659	15693	26349	26349					0.13168988621691824
HIAQTGLKV	9	Unmodified	_HIAQTGLKV_					0	0	0		nc|ENSG00000259024|Q96ET8|TVP23C;ENST00000557349.5_3_17:15341430-15450444:-|nuORF	nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7899475097656	2	483.790184	965.565815	-0.47484	-0.00022972	0.052693	2.5492E-05	-0.42214	-0.00020423	483.7900761495225	33.723	1.4898	33.78	33.5	34.989	0.056568					75	37	4	0	0	0	0.15366	1	2418	2418		98.629	24.655	1	1372900			22730	18780	15660	15694	26350	26350					0.08165466542754984
HICLIIHTE	9	Unmodified	_HICLIIHTE_					0	0	0		ENST00000466893.5_1_3:62262350-62302793:-|nuORF	ENST00000466893.5_1_3:62262350-62302793:-|nuORF	ENST00000466893.5_1_3:62262350-62302793:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7907104492188	2	539.789327	1077.5641	-0.77958	-0.00042081	3.1199	0.0016841	2.3403	0.0012633	539.7910619150618	65.901	0.60562	65.931	65.661	66.267	0.030098					44	15	4	0	0	0	0.33184	1	7765	7765		71.378	2.5911	1	7164800			22731	14823	15661	15695	26351	26351					0.028420894624787252
HIDFATPIQQ	10	Unmodified	_HIDFATPIQQ_					0	0	0		ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2667236328125	2	585.301113	1168.58767	-0.5024	-0.00029406	4.2641	0.0024958	3.7617	0.0022017	585.3037906549936	56.74	0.56062	56.538	56.365	56.926	-0.20208					19	14	2	0	0	0	0.03519	1	6202	6202		31.53	10.583	1	376500			22732	1156	15662	15696	26352	26352					0.010122265006657472
HIDIGRAAVD	10	Unmodified	_HIDIGRAAVD_					0	0	0			REV__nc|ENSG00000079785|Q92499-3|DDX1	REV__nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7960205078125	2	533.78563	1065.55671	-1.1761	-0.00062779	0.89158	0.00047591	-0.28452	-0.00015187	533.7858587953173	35.248	0.78389	35.248	34.944	35.728	0					49	20	3	0	0	0	0.03519	1	2772	2772		23.523	9.3856	1	874990	+		22733	20642	15663	15697	26353	26353					0.026550731864290356
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(140)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7315673828125	2	522.732009	1043.44946	-0.18687	-9.7684E-05	0.42223	0.00022072	0.23536	0.00012303	522.7321132619339	37.44	0.65271	37.247	36.927	37.58	-0.193					41	16	3	0	0	0	0.033883	3	3002	3002;3011;3023		138.48	78.186	1	2441000			22734	4803	15664	15698	26354;26355;26356	26354		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(120)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7320556640625	2	522.732009	1043.44946	-0.83392	-0.00043592	1.4548	0.00076046	0.62087	0.00032455	522.7325963205948	38.187	0.82255	38.008	37.483	38.305	-0.17929					74	23	4	0	0	0	0.062871	1	3146	3146		123.99	63.017	1	4072700			22735	4803	15664	15698	26357	26357		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(130)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7323608398438	2	522.732009	1043.44946	-1.2152	-0.00063524	1.1908	0.00062246	-0.02444	-1.2776E-05	522.732514589386	38.724	3.058	38.56	38.285	41.343	-0.16459					135	81	3	0	0	0	0.049708	3	3235	3212;3223;3235		128.82	67.844	1	1720900			22736	4803	15664	15698	26358;26359;26360	26360		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(140)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7318115234375	2	522.732009	1043.44946	-0.89552	-0.00046812	1.1937	0.00062397	0.29814	0.00015585	522.7324982527607	37.378	0.62132	37.159	36.885	37.506	-0.2195					51	15	4	0	0	0	0.033883	3	2989	2989;2998;3010		138.48	87.144	1	2412100			22737	4803	15664	15698	26361;26362;26363	26361		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(110)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7329711914062	2	522.732009	1043.44946	-0.4714	-0.00024641	0.40865	0.00021362	-0.062741	-3.2797E-05	522.7320288207821	38.795	2.0787	38.573	38.221	40.3	-0.22148					117	54	3	0	0	0	0.088511	3	3211	3211;3223;3233		114.59	57.865	1	1632000			22738	4803	15664	15698	26364;26365;26366	26364		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(130)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MSMS	OPSCC_40_ClassI_Rep-2	5	522.7313842773438	2	522.732009	1043.44946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.159	1	37.938	37.438	38.438	-0.22149								0	0	0	0.021408	1	3121	3121		128.82	60.331	1				22739	4803	15664	15698	26367	26367		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(170)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7317504882812	2	522.732009	1043.44946	-0.37937	-0.00019831	0.56928	0.00029758	0.1899	9.9267E-05	522.7322091512212	37.384	0.81474	37.175	36.765	37.58	-0.2092					56	20	4	0	0	0	0.013308	3	2977	2977;2986;2998		170.31	107.01	1	2283000			22740	4803	15664	15698	26368;26369;26370	26368		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(130)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7318725585938	2	522.732009	1043.44946	-0.55236	-0.00028874	0.82828	0.00043297	0.27593	0.00014424	522.7323085227113	38.19	0.90294	37.971	37.424	38.327	-0.21849					66	25	3	0	0	0	0.049708	1	3115	3115		128.82	67.844	1	4648800			22741	4803	15664	15698	26371	26371		194			-0.0705222001945458
HIDVGGHMY	9	Oxidation (M)	_HIDVGGHM(Oxidation (M))Y_		HIDVGGHM(1)Y		HIDVGGHM(120)Y	0	0	1		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7327880859375	2	522.732009	1043.44946	-0.070556	-3.6882E-05	0.028678	1.4991E-05	-0.041878	-2.1891E-05	522.7318346336199	38.87	2.4187	38.644	38.282	40.701	-0.2257					157	64	4	0	0	0	0.062871	2	3216	3205;3216		123.99	67.268	1	1710100			22742	4803	15664	15698	26372;26373	26373		194			-0.0705222001945458
HIDVGGHMY	9	Unmodified	_HIDVGGHMY_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7346801757812	2	514.734551	1027.45455	-0.19957	-0.00010273	0.0093115	4.7929E-06	-0.19026	-9.7934E-05	514.7343815126377	41.867	2.2186	41.744	41.385	43.603	-0.12299					164	59	4	0	0	0	0.013308	5	3710	3710;3719;3731;3744;3755		180.49	91.852	1	10657000			22743	4803	15664	15699	26374;26375;26376;26377;26378	26374					-0.05807916156823012
HIDVGGHMY	9	Unmodified	_HIDVGGHMY_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.7343139648438	2	514.734551	1027.45455	-0.42066	-0.00021653	0.022214	1.1434E-05	-0.39845	-0.0002051	514.734512218515	42.096	2.0608	41.864	41.508	43.569	-0.23186					151	55	3	0	0	0	0.013308	4	3765	3732;3742;3753;3765		170.31	83.379	1	12888000			22744	4803	15664	15699	26379;26380;26381;26382	26382					-0.05807916156823012
HIDVGGHMY	9	Unmodified	_HIDVGGHMY_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1;ENST00000592210.1_1_19:34291359-34292248:+|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.734375	2	514.734551	1027.45455	-0.20436	-0.00010519	-0.17435	-8.9743E-05	-0.37871	-0.00019494	514.7343235146465	42.142	2.0422	41.912	41.544	43.587	-0.23029					165	55	4	0	0	0	0.013308	5	3733	3733;3744;3753;3766;3778		170.31	79.537	1	13507000			22745	4803	15664	15699	26383;26384;26385;26386;26387	26383					-0.05807916156823012
HIEKCIDAWTD	11	Unmodified	_HIEKCIDAWTD_					0	0	0		ENST00000504921.6_2_5:88017962-88018139:-|nuORF	ENST00000504921.6_2_5:88017962-88018139:-|nuORF	ENST00000504921.6_2_5:88017962-88018139:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.266845703125	3	444.208055	1329.60234	-0.35602	-0.00015815	3.2181	0.0014295	2.8621	0.0012714	444.20950946319033	29.721	0.40595	29.724	29.469	29.875	0.0031357					20	9	3	0	0	0	0.024748	1	1819	1819		18.531	0	1	105850			22746	15723	15665	15700	26388	26388					-0.04928069413517733
HIEKSALLN	9	Unmodified	_HIEKSALLN_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3265380859375	2	512.792924	1023.57129	-0.95449	-0.00048945	1.1999	0.00061531	0.24543	0.00012586	512.7932383194442	39.847	0.6331	39.735	39.5	40.134	-0.11223					35	16	3	0	0	0	0.023239	1	3466	3466		64.207	0	1	621440	+		22747	22189	15666	15701	26389	26389					0.060451453345763184
HIELTVSIIT	10	Unmodified	_HIELTVSIIT_					0	0	0			REV__nc|ENSG00000261011|Q8TF27|AGAP11	REV__nc|ENSG00000261011|Q8TF27|AGAP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.7342529296875	2	563.329339	1124.64412	0.32682	0.00018411	-0.77585	-0.00043706	-0.44904	-0.00025295	563.3288825536687	79.138	0.54459	78.883	78.6	79.145	-0.25471					25	12	3	0	0	0	0.03519	1	9413	9413		26.693	3.6504	1	211160	+		22748	37186	15667	15702	26390	26390					0.08678854337335906
HIFGMKHVS	9	Unmodified	_HIFGMKHVS_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2;REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.323974609375	2	528.276386	1054.53822	-0.04208	-2.223E-05	1.4815	0.00078263	1.4394	0.0007604	528.2774297490654	32.141	0.73882	31.949	31.554	32.293	-0.19261					30	16	3	0	0	0	0.024412	1	2215	2215		31.955	2.8053	1	58886	+		22749	24718;23180	15668	15703	26391	26391					0.013132400108588627
HIFHLLFPV	9	Unmodified	_HIFHLLFPV_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|55	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|55	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7823486328125	2	561.826569	1121.63859	-0.47932	-0.00026929	1.819	0.0010219	1.3396	0.00075265	561.8277990684032	47.044	0.21354	46.851	46.746	46.959	-0.19387					6	5	2	0	0	0	0.024475	1	4557	4557		14.664	0	1	39329	+		22750	19471	15669	15704	26392	26392					0.08263220336198174
HIFKPHSN	8	Unmodified	_HIFKPHSN_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.25897216796875	2	490.259051	978.503549	-0.31257	-0.00015324	-1.9033	-0.00093309	-2.2158	-0.0010863	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	0.96719	2	13178	13087;13178		42.474	6.8562	1	4889800	+		22751	25874	15670	15705	26393;26394	26394					0.013437401944315752
HIFKPHSN	8	Unmodified	_HIFKPHSN_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2630920410156	2	490.259051	978.503549	-0.068469	-3.3567E-05	2.071	0.0010153	2.0026	0.00098178	490.2607369837598	102.89	1.8693	102.76	102.36	104.23	-0.12783					75	48	2	0	0	0	1.0198	1	12777	12777		34.173	5.023	1	299510	+		22752	25874	15670	15705	26395	26395					0.013437401944315752
HIFKPHSN	8	Unmodified	_HIFKPHSN_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.26251220703125	2	490.259051	978.503549	-0.68729	-0.00033695	-1.6168	-0.00079263	-2.3041	-0.0011296	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	1.0017	1	13083	13083		37.028	5.0736	1	5001000	+		22753	25874	15670	15705	26396	26396					0.013437401944315752
HIFKPHSN	8	Unmodified	_HIFKPHSN_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2580261230469	2	490.259051	978.503549	0.70772	0.00034696	-2.6817	-0.0013147	-1.974	-0.00096776	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	1.043	1	13164	13164		30.504	0.6621	1	4976900	+		22754	25874	15670	15705	26397	26397					0.013437401944315752
HIFPRRQGG	9	Unmodified	_HIFPRRQGG_					0	0	0		ENST00000587262.1_1_18:43435450-43438580:-|nuORF	ENST00000587262.1_1_18:43435450-43438580:-|nuORF	ENST00000587262.1_1_18:43435450-43438580:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.3313598632812	2	534.296499	1066.57845	-0.81589	-0.00043593	-0.55648	-0.00029733	-1.3724	-0.00073325	534.295951096026	44.198	0.78535	44.235	43.998	44.783	0.0369					64	22	4	0	0	0	0.024412	1	4165	4165		40.573	0	1	1424600			22755	17265	15671	15706	26398	26398					0.04781922725669574
HIFRGKKR	8	Unmodified	_HIFRGKKR_					0	0	0		ENST00000503613.5_1_5:147774339-147777203:+|nuORF	ENST00000503613.5_1_5:147774339-147777203:+|nuORF	ENST00000503613.5_1_5:147774339-147777203:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2816162109375	2	521.32506	1040.63557	-0.36838	-0.00019204	3.34	0.0017412	2.9717	0.0015492	521.8265704444459	22.465	0.4135	22.279	22.047	22.46	-0.18539					15	8	3	0	0	0	0.027866	1	791	791		20.482	0	1	17501			22756	15696	15672	15707	26399	26399					0.11687390002020948
HIGPMTSIL	9	Unmodified	_HIGPMTSIL_					0	0	0			REV__ENSG00000141026|ENST00000268711|MED9	REV__ENSG00000141026|ENST00000268711|MED9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.76708984375	2	484.76532	967.516088	-0.44208	-0.0002143	3.7471	0.0018165	3.305	0.0016022	484.76705087840116	27.072	0.50498	26.904	26.638	27.142	-0.16816					38	11	4	0	0	0	0.60698	1	1476	1476		52.299	2.2746	1	2288700	+		22757	24059	15673	15708	26400	26400					0.031030155424446093
HIGQELASF	9	Unmodified	_HIGQELASF_					0	0	0			REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.8006896972656	2	501.256174	1000.49779	-0.76532	-0.00038362	-1.9281	-0.00096649	-2.6934	-0.0013501	501.2558781969037	44.806	0.43253	44.553	44.354	44.786	-0.25252					27	10	4	0	0	0	0.024323	1	4201	4201		44.117	6.9577	1	232540	+		22758	34711	15674	15709	26401	26401					-0.0024340310790194053
HIGQELASF	9	Unmodified	_HIGQELASF_					0	0	0			REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.256174	1000.49779	-0.82968	-0.00041588	-0.11846	-5.9379E-05	-0.94814	-0.00047526	501.255970186364	44.605	0.43247	44.502	44.313	44.746	-0.10302	-0.028048	0.00049584	NaN	35.618	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163100	+		22759	34711	15674	15709							-0.0024340310790194053
HIGVATNCL	9	Unmodified	_HIGVATNCL_					0	0	0			REV__ENST00000514158.5_3_5:88236702-88237014:+|nuORF	REV__ENST00000514158.5_3_5:88236702-88237014:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.8898010253906	2	464.23947	926.464386	-0.39695	-0.00018428	-0.38125	-0.00017699	-0.7782	-0.00036127	464.2403738895304	35.614	0.20021	35.398	35.296	35.496	-0.21555					5	4	2	0	0	0	0.024457	1	2711	2711		21.96	3.6355	1	49768	+		22760	34165	15675	15710	26402	26402					-0.00178728151456653
HIHILLAN	8	Unmodified	_HIHILLAN_					0	0	0		nc|ENSG00000181109|Q8NH57|OR52P1	nc|ENSG00000181109|Q8NH57|OR52P1	nc|ENSG00000181109|Q8NH57|OR52P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7771911621094	2	465.779619	929.544686	-0.52618	-0.00024508	-3.9685	-0.0018484	-4.4946	-0.0020935	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.95417	1	9796	9796		44.531	9.3304	1	1029300			22761	18562	15676	15711	26403	26403					0.07709501233898663
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2979736328125	2	504.297842	1006.58113	-0.054928	-2.77E-05	-0.88891	-0.00044827	-0.94383	-0.00047597	504.2972000121617	61.882	0.77148	61.655	61.415	62.187	-0.22663					79	20	5	0	0	0	0.23085	1	7145	7145		84.916	7.5979	1	14914000			22762	8158	15677	15712	26404	26404					0.07810333339944009
HIIENIVAV	9	Unmodified	_HIIENIVAV_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.29766845703125	2	504.297842	1006.58113	-0.93965	-0.00047387	0.75566	0.00038108	-0.18399	-9.2787E-05	504.29810868059883	61.803	1.0546	61.625	61.329	62.383	-0.17781					91	26	5	0	0	0	0.4752	1	6923	6923		60.972	2.19	1	4994100			22763	8158	15677	15712	26405	26405					0.07810333339944009
HIIHKEKN	8	Unmodified	_HIIHKEKN_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.27734375	2	509.793258	1017.57196	-0.50743	-0.00025869	1.3765	0.00070171	0.86902	0.00044302	509.79310959130805	34.144	0.78207	34.144	33.662	34.444	0					34	19	4	0	0	0	0.027866	1	2532	2532		65.803	0	1	448960	+		22764	27967	15678	15713	26406	26406					0.06387984774266897
HIIKHCVPC	9	Unmodified	_HIIKHCVPC_					0	0	0			REV__nc|ENSG00000160685|O15156-2|ZBTB7B	REV__nc|ENSG00000160685|O15156-2|ZBTB7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2360229492188	2	525.27279	1048.53103	-0.25606	-0.0001345	1.9113	0.0010039	1.6552	0.00086945	525.273544955105	25.626	0.70069	25.455	24.997	25.698	-0.17078					11	8	2	0	0	0	0.024443	1	1219	1219		44.531	5.7249	1	148980	+		22765	25334	15679	15714	26407	26407					0.008701841387846798
HIIQHQVLT	9	Unmodified	_HIIQHQVLT_					0	0	0			REV__ENSG00000131845|ENST00000282286|ZNF304	REV__ENSG00000131845|ENST00000282286|ZNF304	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8198852539062	2	544.81419	1087.61383	-0.92613	-0.00050457	0.41205	0.00022449	-0.51408	-0.00028008	545.3167223552271	47.671	0.5136	47.671	47.361	47.875	0					31	15	3	0	0	0	0.024405	1	4797	4797		44.117	13.613	1	587450	+		22766	23237	15680	15715	26408	26408					0.07352540462784418
HIIVKEGNS	9	Unmodified	_HIIVKEGNS_					0	0	0		ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-3|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7781982421875	2	498.777274	995.539994	-0.65637	-0.00032738	0.5756	0.0002871	-0.080765	-4.0284E-05	498.7774220093601	26.922	0.77781	26.68	26.298	27.076	-0.24217					38	18	4	0	0	0	0.85329	1	1442	1442		35.618	0.41757	1	656540			22767	10260	15681	15716	26409	26409					0.04204572300477594
HIIVKEGNS	9	Unmodified	_HIIVKEGNS_					0	0	0		ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-3|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.777274	995.539994	-0.010115	-5.0452E-06	-1.7155	-0.00085565	-1.7256	-0.00086069	498.77612571330394	26.505	0.61511	26.505	26.043	26.658	0	-0.041497	-0.0018794	NaN	35.618	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243240			22768	10260	15681	15716							0.04204572300477594
HIIVKEGNS	9	Unmodified	_HIIVKEGNS_					0	0	0		ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-3|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.777274	995.539994	-0.49762	-0.0002482	-1.5881	-0.00079211	-2.0857	-0.0010403	498.77585714768946	26.52	0.65419	26.497	25.998	26.652	-0.023088	-0.049627	-0.0017523	NaN	35.618	34	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232730			22769	10260	15681	15716							0.04204572300477594
HIIVKEGNS	9	Unmodified	_HIIVKEGNS_					0	0	0		ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-3|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.777274	995.539994	-0.037966	-1.8936E-05	-1.1676	-0.00058235	-1.2055	-0.00060129	498.7764705179307	26.33	0.70625	26.412	25.88	26.586	0.081293	-0.13529	-0.0013328	NaN	35.618	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238130			22770	10260	15681	15716							0.04204572300477594
HIIVKEGNS	9	Unmodified	_HIIVKEGNS_					0	0	0		ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-3|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	498.777274	995.539994	-0.308	-0.00015363	0.12671	6.32E-05	-0.1813	-9.0426E-05	498.77724968102837	26.659	0.66729	26.49	26.224	26.892	-0.16816	-0.056447	-4.166E-05	NaN	35.618	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597570			22771	10260	15681	15716							0.04204572300477594
HIIVKEGNS	9	Unmodified	_HIIVKEGNS_					0	0	0		ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-3|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	498.777274	995.539994	-0.84369	-0.00042081	0.3551	0.00017712	-0.48859	-0.0002437	498.7773886298771	26.853	0.71019	26.697	26.351	27.061	-0.15664	0.14996	0.00018617	NaN	35.618	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642530			22772	10260	15681	15716							0.04204572300477594
HIIWGILLA	9	Unmodified	_HIIWGILLA_					0	0	0		nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.279052734375	2	518.32112	1034.62769	-0.42909	-0.00022241	4.2152	0.0021848	3.7861	0.0019624	518.3241400890855	77.218	0.21611	77.232	77.145	77.361	0.013496					6	4	2	0	0	0	0.024541	1	9470	9470		21.702	0	1	95132			22773	10010	15682	15717	26410	26410					0.11175817961907342
HIKHRVQEL	9	Unmodified	_HIKHRVQEL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.338134765625	2	580.338364	1158.66217	-0.93638	-0.00054342	0.71116	0.00041271	-0.22522	-0.00013071	580.3386433163989	21.848	0.95202	21.658	21.324	22.276	-0.19072					54	19	4	0	0	0	0.17822	1	713	713		93.195	16.421	1	358380			22774	5087	15683	15718	26411	26411					0.08919034102723344
HIKHRVQEL	9	Unmodified	_HIKHRVQEL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	580.338134765625	2	580.338364	1158.66217	-1.266	-0.00073471	0.96888	0.00056228	-0.29712	-0.00017243	580.3388542663027	21.749	1.0959	21.536	21.315	22.411	-0.2128					57	22	4	0	0	0	0.31037	2	684	684;694		74.255	15.473	1	386840			22775	5087	15683	15718	26412;26413	26412					0.08919034102723344
HIKHRVQEL	9	Unmodified	_HIKHRVQEL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	580.338364	1158.66217	0.29724	0.0001725	-0.55618	-0.00032277	-0.25894	-0.00015027	580.3379811286054	21.653	0.90467	21.476	21.162	22.066	-0.17721	-0.080896	-0.00094667	NaN	93.195	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474690			22776	5087	15683	15718							0.08919034102723344
HIKQHNVLS	9	Unmodified	_HIKQHNVLS_					0	0	0			REV__nc|ENSG00000136870|O75820-3|ZNF189	REV__nc|ENSG00000136870|O75820-3|ZNF189	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7771606445312	2	538.30399	1074.59343	-1.398	-0.00075256	-2.9496	-0.0015878	-4.3477	-0.0023404	538.3025181628418	20.347	0.39044	20.347	20.078	20.468	0					12	7	2	0	0	0	0.024541	1	511	511		12.207	0	1	29064	+		22777	23694	15684	15719	26414	26414					0.05911369802993249
HIKRSTLS	8	Unmodified	_HIKRSTLS_					0	0	0			REV__ENST00000528706.5_1_11:117279912-117282881:+|nuORF	REV__ENST00000528706.5_1_11:117279912-117282881:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.8076477050781	2	471.279983	940.545414	0.44138	0.00020801	-1.234	-0.00058158	-0.79266	-0.00037356	471.2795212127653	19.51	0.69098	19.35	19.034	19.725	-0.1608					25	13	3	0	0	0	0.027866	1	431	431		37.159	6.6555	1	89544	+		22778	21848	15685	15720	26415	26415					0.07276295882968498
HIKVQSRNA	9	Unmodified	_HIKVQSRNA_					0	0	0			REV__PLXDC1|p.I124M|1|0.31|ENSG00000161381|chr17:39109275-39109275|T/C|missense_variant	REV__PLXDC1|p.I124M|1|0.31|ENSG00000161381|chr17:39109275-39109275|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7379760742188	2	526.801614	1051.58868	0.49152	0.00025893	-4.1521	-0.0021873	-3.6606	-0.0019284	526.7995911061321	52.966	0.23973	52.707	52.523	52.763	-0.25838					9	5	2	0	0	0	0.024495	1	5518	5518		34.173	16.808	1	90296	+		22779	25382	15686	15721	26416	26416					0.06494485660232385
HILAHSHLY	9	Unmodified	_HILAHSHLY_					0	0	0			REV__ENST00000537305.5_1_12:118674470-118681279:-|nuORF	REV__ENST00000537305.5_1_12:118674470-118681279:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.7984008789062	2	545.793258	1089.57196	2.9089	0.0015877	3.0717	0.0016765	5.9806	0.0032642	545.7947505595847	17.176	0.24012	17.176	17.06	17.3	0					7	4	2	0	0	0	0.99955	1	141	141		20.482	2.1574	1	42379	+		22780	23509	15687	15722	26417	26417					0.03075984774295648
HILAHSHLY	9	Unmodified	_HILAHSHLY_					0	0	0			REV__ENST00000537305.5_1_12:118674470-118681279:-|nuORF	REV__ENST00000537305.5_1_12:118674470-118681279:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	545.793258	1089.57196	2.9089	0.0015877	3.0717	0.0016765	5.9806	0.0032642	545.7947505595847	17.176	0.24012	17.176	17.06	17.3	0	0.0078949	-0.0025401	NaN	20.482	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42379	+		22781	23509	15687	15722							0.03075984774295648
HILAHSHLY	9	Unmodified	_HILAHSHLY_					0	0	0			REV__ENST00000537305.5_1_12:118674470-118681279:-|nuORF	REV__ENST00000537305.5_1_12:118674470-118681279:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.793258	1089.57196	1.1126	0.00060727	5.1338	0.002802	6.2464	0.0034093	545.7957922448862	17.324	0.252	17.17	17.007	17.259	-0.15403	0.0018072	-0.00028917	NaN	20.482	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29076	+		22782	23509	15687	15722							0.03075984774295648
HILAKLEKYY	10	Unmodified	_HILAKLEKYY_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	639.3613891601562	2	639.366256	1276.71796	-1.4828	-0.00094804	-3.3355	-0.0021326	-4.8183	-0.0030806	639.3639199334042	110.13	0.48322	110	109.83	110.31	-0.12525					62	19	4	0	0	0	1.1237	1	13558	13558		23.042	2.0956	1	504380			22783	4815;1191	15688	15723	26418	26418					0.09066822499676164
HILHVCLLLS	10	Unmodified	_HILHVCLLLS_					0	0	0		ENST00000562532.2_1_20:30584341-30584887:+|nuORF	ENST00000562532.2_1_20:30584341-30584887:+|nuORF	ENST00000562532.2_1_20:30584341-30584887:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.7748413085938	2	574.336444	1146.65834	-0.74054	-0.00042532	4.0595	0.0023315	3.319	0.0019062	574.338788849252	34.542	0.28455	34.367	34.168	34.452	-0.17557					8	6	2	0	0	0	0.03519	1	2544	2544		18.324	3.4595	1	61923			22784	16842	15689	15724	26419	26419					0.09087228284647608
HILKHVRQP	9	Unmodified	_HILKHVRQP_					0	0	0			REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2371215820312	2	564.343449	1126.67235	-0.13615	-7.6833E-05	-1.1635	-0.0006566	-1.2996	-0.00073343	564.342694920904	46.442	0.4169	46.181	46.006	46.423	-0.26118					18	10	2	0	0	0	0.024466	1	4434	4434		18.324	0.95945	1	190840	+		22785	20323	15690	15725	26420	26420					0.11407641827918269
HILLLPGEEL	10	Unmodified	_HILLLPGEEL_					0	0	0		ENST00000428275.1_1_X:53172386-53172590:-|nuORF	ENST00000428275.1_1_X:53172386-53172590:-|nuORF	ENST00000428275.1_1_X:53172386-53172590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3304443359375	2	567.331882	1132.64921	-0.94715	-0.00053735	-2.5339	-0.0014376	-3.481	-0.0019749	567.3302848841014	102.52	0.82284	102.52	102.3	103.12	0					41	19	4	0	0	0	0.87795	1	13154	13154		55.504	4.1688	1	875600			22786	14131	15691	15726	26421	26421					0.0881915819995811
HILLSDRTQK	10	Unmodified	_HILLSDRTQK_					0	0	0			REV__ENSG00000134042|ENST00000398439|MRO	REV__ENSG00000134042|ENST00000398439|MRO	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2374572753906	3	404.234933	1209.68297	2.7074	0.0010944	3.63	0.0014674	6.3374	0.0025618	404.2362044449721	18.524	1.2425	18.281	17.627	18.869	-0.24256					42	24	3	0	0	0	1.1211	1	289	289		21.686	1.6553	1	122050	+		22787	23413	15692	15727	26422	26422					0.08651579691695588
HILLSDRTQK	10	Unmodified	_HILLSDRTQK_					0	0	0			REV__ENSG00000134042|ENST00000398439|MRO	REV__ENSG00000134042|ENST00000398439|MRO	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	404.234933	1209.68297	1.0737	0.00043404	5.2251	0.0021122	6.2988	0.0025462	404.23675567957946	18.509	0.98946	18.306	17.915	18.904	-0.20371	0.01231	0.0012435	NaN	21.686	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99641	+		22788	23413	15692	15727							0.08651579691695588
HILREFERY	9	Unmodified	_HILREFERY_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	631.7874755859375	2	631.835654	1261.65676	-1.6941	-0.0010704	0.070328	4.4436E-05	-1.6238	-0.001026	631.8355282461673	53.772	0.53086	53.636	53.428	53.959	-0.13617					31	16	3	0	0	0	0.023655	1	5707	5707		69.628	0	1	598030	+		22789	23910	15693	15728	26423	26423					0.03639310520225081
HILREFERY	9	Unmodified	_HILREFERY_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	631.787109375	2	631.835654	1261.65676	-0.50208	-0.00031723	-1.2101	-0.00076459	-1.7122	-0.0010818	631.8346988215721	53.871	0.49973	53.673	53.456	53.955	-0.19739					33	15	3	0	0	0	0.019995	1	5705	5705		113.41	23.042	1	686060	+		22790	23910	15693	15728	26424	26424					0.03639310520225081
HILRIRSAF	9	Unmodified	_HILRIRSAF_					0	0	0		ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.8366088867188	2	556.838	1111.66145	-0.12453	-6.9343E-05	-3.6128	-0.0020117	-3.7373	-0.0020811	556.8358219177833	17.943	0.34815	17.736	17.564	17.912	-0.20669					16	6	3	0	0	0	0.97516	1	240	240		25.45	6.0902	1	84625			22791	11198	15694	15729	26425	26425					0.11008239453622082
HILRIRSAF	9	Unmodified	_HILRIRSAF_					0	0	0		ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.838	1111.66145	3.3517	0.0018664	-7.625	-0.0042459	-4.2733	-0.0023795	556.8336638856935	18.014	0.29213	18.014	17.844	18.136	0	0.044276	-0.0028682	NaN	25.45	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26560			22792	11198	15694	15729							0.11008239453622082
HILRIRSAF	9	Unmodified	_HILRIRSAF_					0	0	0		ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	556.838	1111.66145	0.0020869	1.162E-06	-4.4391	-0.0024719	-4.437	-0.0024707	556.835287568705	18.2	0.24633	18.069	17.957	18.203	-0.13148	0.098952	0.00067992	NaN	25.45	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30364			22793	11198	15694	15729							0.11008239453622082
HILRIRSAF	9	Unmodified	_HILRIRSAF_					0	0	0		ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	556.838	1111.66145	4.5191	0.0025164	-8.6911	-0.0048395	-4.172	-0.0023231	556.8328074135543	18.234	0.26268	18.298	18.14	18.402	0.063307	0.32786	-0.0040554	NaN	25.45	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16683			22794	11198	15694	15729							0.11008239453622082
HILRIRSAF	9	Unmodified	_HILRIRSAF_					0	0	0		ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.838	1111.66145	0.98529	0.00054864	-4.7747	-0.0026588	-3.7894	-0.0021101	556.8351590185039	17.887	0.34915	17.733	17.557	17.906	-0.15403	-0.23721	0.00030613	NaN	25.45	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96104			22795	11198	15694	15729							0.11008239453622082
HILRKAKRR	9	Unmodified	_HILRKAKRR_					0	0	0		nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.391265	1176.76798	-1.8572	-0.0010946	0.76176	0.00044898	-1.0954	-0.00064563	589.391743950443	93.165	0.21881	93.026	92.873	93.092	-0.13995					6	4	2	0	0	0	0.024541	1	11461	11461		10.866	1.1599	1	51741			22796	2186	15695	15730	26426	26426					0.18666414738822823
HILRSDIDL	9	Unmodified	_HILRSDIDL_					0	0	0			REV__nc|ENSG00000289690|Q7L2J0-2|MEPCE	REV__nc|ENSG00000289690|Q7L2J0-2|MEPCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3031005859375	2	541.303655	1080.59276	-0.14343	-7.764E-05	-0.79556	-0.00043064	-0.93899	-0.00050828	541.3031407680302	47.263	1.1151	47.11	46.776	47.891	-0.15301					98	31	5	0	0	0	0.56934	1	4700	4700		54.776	6.8168	1	10586000	+		22797	24513	15696	15731	26427	26427					0.05568530363279933
HILYRIYYRA	10	Unmodified	_HILYRIYYRA_					0	0	0		ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2691345214844	3	456.59094	1366.75099	-0.27464	-0.0001254	-2.2643	-0.0010339	-2.5389	-0.0011593	456.5896546705327	47.897	0.99231	47.744	47.371	48.363	-0.15301					59	27	3	0	0	0	0.03519	1	4749	4749		20.837	0	1	808770			22798	13013	15697	15732	26428	26428					0.08228449342345812
HINKGLNSS	9	Unmodified	_HINKGLNSS_					0	0	0			REV__ADAMDEC1|p.K301N|1|0.24|ENSG00000134028|chr8:24399014-24399014|G/T|missense_variant	REV__ADAMDEC1|p.K301N|1|0.24|ENSG00000134028|chr8:24399014-24399014|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2596130371094	2	485.259248	968.503943	0.27426	0.00013309	-0.87666	-0.00042541	-0.6024	-0.00029232	485.25883018080987	21.179	2.1425	20.989	20.637	22.779	-0.19072					97	44	4	0	0	0	0.15029	2	616	616;652		99.375	6.6794	1	2836300	+		22799	19066	15698	15733	26429;26430	26429					0.01843115123631378
HINKLTQIE	9	Unmodified	_HINKLTQIE_					0	0	0		ENSG00000047644|ENST00000380861|WWC3;nc|ENSG00000047644|Q9ULE0-2|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3136596679688	2	548.31148	1094.60841	-0.96736	-0.00053042	0.47188	0.00025874	-0.49548	-0.00027168	548.3118526535122	56.279	1.3157	56.123	55.814	57.13	-0.15601					119	36	5	0	0	0	0.4752	1	6273	6273		60.972	7.6205	1	26631000			22800	1108	15699	15734	26431	26431					0.06488816880323611
HINMKSVV	8	Oxidation (M)	_HINM(Oxidation (M))KSVV_		HINM(1)KSVV		HINM(46)KSVV	0	0	1		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MSMS	OPSCC_40_ClassI_Rep-1	4	472.2504577636719	2	472.25512	942.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.23	1	24.015	23.515	24.515	-0.2151								0	0	0	0.63389	1	1040	1040		45.952	10.334	1				22801	6240;18383	15700	15735	26432	26432		259			0.022138448826581225
HIPGHYDL	8	Unmodified	_HIPGHYDL_					0	0	0		ENST00000469390.5_1_1:156877911-156884587:+|nuORF;nc|ENSG00000157890|A6BM72-2|MEGF11;ENSG00000187800|ENST00000292357|PEAR1;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11	ENST00000469390.5_1_1:156877911-156884587:+|nuORF	ENST00000469390.5_1_1:156877911-156884587:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.2540283203125	2	476.237784	950.461016	-0.67662	-0.00032223	-0.8142	-0.00038775	-1.4908	-0.00070999	476.23792651654037	26.934	0.49993	27.015	26.671	27.171	0.081293					18	12	2	0	0	0	0.027866	1	1326	1326		60.294	10.269	1	212940			22802	6628	15701	15736	26433	26433					-0.01619654933813308
HIPLYALTL	9	Unmodified	_HIPLYALTL_					0	0	0			REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF	REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2689208984375	2	520.810585	1039.60662	-0.24544	-0.00012783	0.099935	5.2047E-05	-0.1455	-7.5779E-05	520.810444647735	74.832	0.48341	74.832	74.593	75.076	0					22	11	2	0	0	0	0.024354	1	9193	9193		57.811	11.859	1	261740	+		22803	35680	15702	15737	26434	26434					0.08839807862364069
HIPRKKRSA	9	Unmodified	_HIPRKKRSA_					0	0	0		ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A;nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A;nc|ENSG00000154898|Q8IYA2|CCDC144CP	ENSG00000170160|ENST00000399273|CCDC144A	ENSG00000170160|ENST00000399273|CCDC144A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.83935546875	2	546.841074	1091.66759	0.67566	0.00036948	-2.4362	-0.0013322	-1.7605	-0.00096274	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	1.0101	1	12460	12460		18.324	0	1	9262700			22804	8011	15703	15738	26435	26435					0.12542757685173456
HIQETAPKY	9	Unmodified	_HIQETAPKY_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2676391601562	2	543.782556	1085.55056	-0.30066	-0.0001635	1.6075	0.00087415	1.3069	0.00071066	543.7828233211936	35.862	0.54649	35.648	35.47	36.017	-0.21436					23	15	2	0	0	0	0.02435	1	2758	2758		51.335	10.557	1	685640			22805	1429	15704	15739	26436	26436					0.01120554954900399
HIQPHLASL	9	Unmodified	_HIQPHLASL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2884216308594	2	508.287808	1014.56106	-0.19113	-9.7147E-05	0.049452	2.5136E-05	-0.14167	-7.2011E-05	508.28766562557246	52.615	1.1719	52.488	52.157	53.329	-0.12705					47	29	2	0	0	0	0.55828	1	5497	5497		55.504	3.205	1	2367300			22806	186	15705	15740	26437	26437					0.054365823999773966
HIREHVILN	9	Unmodified	_HIREHVILN_					0	0	0			REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF	REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8250122070312	2	565.825089	1129.63563	0.38588	0.00021834	2.5142	0.0014226	2.9	0.0016409	565.8266447914776	105.27	0.28355	105.1	104.98	105.26	-0.16484					14	9	3	0	0	0	0.6238	1	13104	13104		51.193	7.5419	1	348100	+		22807	27812	15706	15741	26438	26438					0.07599345211383479
HIRQFNKESLV	11	Unmodified	_HIRQFNKESLV_					0	0	0			REV__ENST00000480948.5_1_2:73989888-73993970:-|nuORF	REV__ENST00000480948.5_1_2:73989888-73993970:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7487487792969	3	457.589487	1369.74663	-0.41876	-0.00019162	-2.1028	-0.0009622	-2.5215	-0.0011538	457.9230935504164	30.239	0.24892	30.247	30.082	30.331	0.0086708					6	5	2	0	0	0	0.024851	1	1899	1899		14.086	6.6863	1	27806	+		22808	33440	15707	15742	26439	26439					0.0765494012880481
HIRQHMVLH	9	Unmodified	_HIRQHMVLH_					0	0	0			REV__ENSG00000167384|ENST00000592529|ZNF180	REV__ENSG00000167384|ENST00000592529|ZNF180	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.8184814453125	2	585.819284	1169.62402	-0.21429	-0.00012554	-1.3028	-0.00076323	-1.5171	-0.00088877	585.818468831878	18.987	2.9929	18.784	18.51	21.503	-0.20371					127	60	4	0	0	0	0.64155	1	357	357		50.025	0.48849	1	1770400	+		22809	26137	15708	15743	26440	26440					0.04598824916411104
HIRQHQTLK	9	Unmodified	_HIRQHQTLK_					0	0	0			REV__ENSG00000267041|ENST00000591344|ZNF850	REV__ENSG00000267041|ENST00000591344|ZNF850	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.2776489257812	2	580.835988	1159.65742	-0.30145	-0.0001751	1.25	0.00072606	0.94857	0.00055097	580.836973718099	86.471	0.35041	86.334	86.093	86.443	-0.13734					12	7	2	0	0	0	0.024541	1	10490	10490		24.519	12.313	1	60884	+		22810	29144	15709	15744	26441	26441					0.08398149959930379
HIRQHVIY	8	Unmodified	_HIRQHVIY_					0	0	0			REV__nc|ENSG00000167377|P17027-2|ZNF23	REV__nc|ENSG00000167377|P17027-2|ZNF23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2738647460938	2	533.30125	1064.58795	0.0084254	4.4933E-06	-3.6441	-0.0019434	-3.6356	-0.0019389	533.2986878882391	49.744	0.44466	49.638	49.449	49.894	-0.10558					24	11	3	0	0	0	0.027866	1	5017	5017		62.978	18.447	1	517080	+		22811	26135	15710	15745	26442	26442					0.05823691011187293
HIRQHVIY	8	Unmodified	_HIRQHVIY_					0	0	0			REV__nc|ENSG00000167377|P17027-2|ZNF23	REV__nc|ENSG00000167377|P17027-2|ZNF23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2742309570312	2	533.30125	1064.58795	-0.41128	-0.00021934	-3.6489	-0.001946	-4.0602	-0.0021653	533.2991031115351	50.012	0.32845	49.733	49.547	49.875	-0.27977					21	8	3	0	0	0	0.027866	1	5052	5052		52.299	0	1	494190	+		22812	26135	15710	15745	26443	26443					0.05823691011187293
HIRQHVIY	8	Unmodified	_HIRQHVIY_					0	0	0			REV__nc|ENSG00000167377|P17027-2|ZNF23	REV__nc|ENSG00000167377|P17027-2|ZNF23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2724609375	2	533.30125	1064.58795	0.13206	7.0425E-05	-3.754	-0.002002	-3.622	-0.0019316	533.2989245872667	49.861	0.40556	49.68	49.495	49.901	-0.18071					21	10	3	0	0	0	0.027866	1	5044	5044		52.299	17.098	1	497180	+		22813	26135	15710	15745	26444	26444					0.05823691011187293
HIRSKTSL	8	Unmodified	_HIRSKTSL_					0	0	0		ENSG00000113088|ENST00000231009|GZMK	ENSG00000113088|ENST00000231009|GZMK	ENSG00000113088|ENST00000231009|GZMK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.8082275390625	2	471.279983	940.545414	1.0112	0.00047657	-0.609	-0.00028701	0.40222	0.00018956	471.2792861226281	19.63	0.79082	19.43	19.106	19.897	-0.2001					21	15	2	0	0	0	0.027866	1	438	438		47.916	0	1	101680			22814	3261	15711	15746	26445	26445					0.07276295882968498
HIRTIHLG	8	Unmodified	_HIRTIHLG_					0	0	0		ENSG00000164684|ENST00000327835|ZNF704	ENSG00000164684|ENST00000327835|ZNF704	ENSG00000164684|ENST00000327835|ZNF704	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.78302001953125	2	473.782693	945.550834	-0.10739	-5.0879E-05	0.53246	0.00025227	0.42507	0.00020139	473.7826685313286	17.497	0.44837	17.29	17.166	17.614	-0.20669					15	8	3	0	0	0	0.78609	1	186	186		60.294	10.269	1	73882			22815	7307	15712	15747	26446	26446					0.07588019465424622
HIRYNPLQ	8	Unmodified	_HIRYNPLQ_					0	0	0		ENSG00000213930|ENST00000378842|GALT;ENST00000485531.1_1_9:34646906-34647264:+|nuORF;ENST00000557706.5_1_9:34647054-34647264:+|nuORF;ENST00000556157.1_1_9:34647054-34647489:+|nuORF;ENST00000487381.5_1_9:34646701-34647264:+|nuORF;ENST00000557541.5_1_9:34646906-34647860:+|nuORF;ENST00000556494.5_1_9:34646906-34647602:+|nuORF;ENST00000555214.5_1_9:34646701-34648116:+|nuORF;ENST00000473529.5_1_9:34646701-34647602:+|nuORF;ENST00000554944.5_1_9:34646701-34647660:+|nuORF;ENST00000554139.5_1_9:34646701-34647703:+|nuORF;ENST00000489643.6_1_9:34646701-34648507:+|nuORF	ENSG00000213930|ENST00000378842|GALT	ENSG00000213930|ENST00000378842|GALT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.32177734375	2	520.785433	1039.55631	2.9858	0.001555	-0.43545	-0.00022678	2.5503	0.0013282	520.7850845561088	17.77	0.48934	17.77	17.598	18.087	0					17	9	2	0	0	0	0.027866	1	203	203		42.474	1.9018	1	191160			22816	10529	15713	15748	26447	26447					0.0381169825723191
HISFIRIQTE	10	Unmodified	_HISFIRIQTE_					0	0	0			REV__ENST00000338087.9_1_8:134050541-134050679:-|nuORF	REV__ENST00000338087.9_1_8:134050541-134050679:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.2074890136719	3	415.2313	1242.67207	1.8408	0.00076438	3.9176	0.0016267	5.7584	0.0023911	415.2329134265925	36.552	0.68293	36.353	36.172	36.855	-0.19829					25	16	2	0	0	0	0.03519	1	2886	2886		43.651	25.818	1	209760	+		22817	30574	15714	15749	26448	26448					0.06044177317426147
HISHIAQQV	9	Unmodified	_HISHIAQQV_					0	0	0		ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.78369140625	2	516.78289	1031.55123	-1.5607	-0.00080657	1.4391	0.0007437	-0.12165	-6.2868E-05	516.783537662332	29.389	1.6086	29.389	29.149	30.758	0					72	39	4	0	0	0	0.027092	1	1796	1796		143.89	67.113	1	1386000			22818	3967	15715	15750	26449	26449					0.03671394394609706
HISHIAQQV	9	Unmodified	_HISHIAQQV_					0	0	0		ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.782958984375	2	516.78289	1031.55123	-0.64827	-0.00033502	0.58041	0.00029995	-0.067863	-3.507E-05	516.7830692769122	29.368	1.4516	29.372	29.166	30.618	0.0031357					72	35	4	0	0	0	0.033448	1	1781	1781		138.83	62.051	1	1329000			22819	3967	15715	15750	26450	26450					0.03671394394609706
HISKKLGETEV	11	Unmodified	_HISKKLGETEV_					0	0	0			REV__nc|ENSG00000109654|Q9C040|TRIM2	REV__nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.5596923828125	3	414.23471	1239.6823	-0.50409	-0.00020881	-2.6039	-0.0010786	-3.108	-0.0012875	414.23240665145977	26.627	0.56095	26.464	26.234	26.795	-0.16331					22	13	3	0	0	0	0.02473	1	1378	1378		26.75	0.056795	1	88657	+		22820	21804	15716	15751	26451	26451					0.07204740251972908
HISSAHLNPAV	11	Unmodified	_HISSAHLNPAV_					0	0	0		AQP1|p.G72S|1|0.11|ENSG00000240583|chr7:30912123-30912123|G/A|missense_variant	AQP1|p.G72S|1|0.11|ENSG00000240583|chr7:30912123-30912123|G/A|missense_variant	AQP1|p.G72S|1|0.11|ENSG00000240583|chr7:30912123-30912123|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.1969604492188	2	573.306729	1144.59891	-0.32901	-0.00018862	1.9621	0.0011249	1.6331	0.00093625	573.3072882394902	32.582	0.40099	32.424	32.163	32.564	-0.15772					12	9	2	0	0	0	0.024747	1	2243	2243		31.53	0	1	133700			22821	109	15717	15752	26452	26452					0.03239048594787164
HITLIPKLTT	10	Unmodified	_HITLIPKLTT_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|3|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|3|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|3|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8538818359375	2	568.855524	1135.69649	-0.66068	-0.00037583	-3.3379	-0.0018988	-3.9986	-0.0022746	568.8534924489414	101.15	1.6136	101.15	100.78	102.39	0					120	36	5	0	0	0	1.089	1	12920	12920		34.173	11.13	1	8405100			22822	17865	15718	15753	26453	26453					0.13407437470914374
HIVQRIQSE	9	Unmodified	_HIVQRIQSE_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.306396484375	2	555.306729	1108.59891	-0.329	-0.0001827	0.074124	4.1161E-05	-0.25488	-0.00014154	555.3067176430089	19.245	0.82813	19.126	18.903	19.731	-0.11872					28	16	3	0	0	0	0.4752	1	377	377		60.972	2.19	1	165210	+		22823	27265	15719	15754	26454	26454					0.04895048594812579
HIVQRIQSE	9	Unmodified	_HIVQRIQSE_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	555.306729	1108.59891	2.9219	0.0016226	-2.8854	-0.0016023	0.036543	2.0292E-05	555.3050056666576	19.233	0.64164	19.299	19.093	19.735	0.066195	0.21935	-0.00047665	NaN	60.972	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114540	+		22824	27265	15719	15754							0.04895048594812579
HIVQRIQSE	9	Unmodified	_HIVQRIQSE_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	555.306729	1108.59891	0.5097	0.00028304	-8.3857	-0.0046567	-7.876	-0.0043736	555.3020025723787	19.069	0.29586	18.866	18.708	19.004	-0.20371	-0.21424	-0.0065854	NaN	60.972	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37263	+		22825	27265	15719	15754							0.04895048594812579
HIVVAKSPV	9	Unmodified	_HIVVAKSPV_					0	0	0			REV__nc|ENSG00000130956|Q5JVS0-2|HABP4	REV__nc|ENSG00000130956|Q5JVS0-2|HABP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2266845703125	2	475.295102	948.575651	-0.36887	-0.00017532	-0.6829	-0.00032458	-1.0518	-0.0004999	475.29581829717483	27.03	0.20508	26.862	26.766	26.971	-0.16816					6	4	2	0	0	0	0.024436	1	1450	1450		47.916	22.465	1	37458	+		22826	23171	15720	15755	26455	26455					0.09930654548145412
HIWGLTLLD	9	Unmodified	_HIWGLTLLD_					0	0	0			REV__nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	REV__nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2706909179688	2	534.297842	1066.58113	-0.5756	-0.00030754	0.34422	0.00018392	-0.23138	-0.00012362	534.2978436045063	51.997	0.70992	51.997	51.803	52.513	0					49	18	3	0	0	0	0.024386	1	5612	5612		25.45	5.4534	1	2105600	+		22827	36706	15721	15756	26456	26456					0.050503333399547046
HIWSDPRQP	9	Unmodified	_HIWSDPRQP_					0	0	0			REV__ENST00000487174.1_1_1:32687641-32687818:-|nuORF	REV__ENST00000487174.1_1_1:32687641-32687818:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.802734375	2	568.285797	1134.55704	-1.0919	-0.00062049	-0.41203	-0.00023415	-1.5039	-0.00085465	568.2855301167722	82.07	0.41385	82.095	81.859	82.273	0.025711					18	9	2	0	0	0	0.024381	1	10130	10130		45.952	4.5253	1	247080	+		22828	33603	15722	15757	26457	26457					-0.004855070937082928
HIYNRTCHLKR	11	Unmodified	_HIYNRTCHLKR_					0	0	0			REV__ENSG00000106018|ENST00000262178|VIPR2;REV__ENST00000446673.5_1_3:42544163-42573332:+|nuORF;REV__nc|ENSG00000114812|P32241-4|VIPR1;REV__ENSG00000065325|ENST00000262441|GLP2R	REV__ENSG00000065325|ENST00000262441|GLP2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.8007507324219	3	480.926217	1439.75682	-0.29093	-0.00013992	-0.47389	-0.00022791	-0.76482	-0.00036782	481.26017745325976	94.33	0.16048	94.192	94.092	94.253	-0.13779					5	3	2	0	0	0	0.024792	1	11605	11605		24.232	4.9691	1	46946	+		22829	20306;21589;22147;32633	15723	15758	26458	26458					0.05453224582356597
HKAGHFSK	8	Unmodified	_HKAGHFSK_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140;ENST00000565298.5_1_16:1560947-1574065:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.75872802734375	2	456.245944	910.477334	-0.28221	-0.00012876	3.1119	0.0014198	2.8297	0.001291	456.2471281963128	23.707	0.44955	23.528	23.201	23.651	-0.17989					14	10	2	0	0	0	0.027866	1	924	924		23.042	0	1	112210			22830	9632	15724	15759	26459	26459					0.018514710229510456
HKAGHFSK	8	Unmodified	_HKAGHFSK_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;nc|ENSG00000187535|Q96RY7-2|IFT140;ENST00000565298.5_1_16:1560947-1574065:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.245944	910.477334	0.33098	0.00015101	0.86439	0.00039438	1.1954	0.00054538	456.2462450392895	23.811	0.43398	23.609	23.358	23.792	-0.20193	0.040523	-0.0014546	NaN	10.866	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52565			22831	9632	15724	15759							0.018514710229510456
HKAVLACAA	9	Unmodified	_HKAVLACAA_					0	0	0		ZBTB39|p.L533Pfs*31|1|0.12|ENSG00000166860|chr12:57003312-57003322|CGTCTTCCAGA/-|frameshift_variant;ENSG00000166860|ENST00000300101|ZBTB39	ZBTB39|p.L533Pfs*31|1|0.12|ENSG00000166860|chr12:57003312-57003322|CGTCTTCCAGA/-|frameshift_variant	ZBTB39|p.L533Pfs*31|1|0.12|ENSG00000166860|chr12:57003312-57003322|CGTCTTCCAGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.231689453125	2	442.244555	882.474557	0.093954	4.1551E-05	1.9671	0.00086993	2.061	0.00091148	442.24567334103637	47.263	0.36061	46.994	46.764	47.125	-0.26939					12	9	2	0	0	0	0.024436	1	4618	4618		38.806	25.031	1	95674			22832	7620	15725	15760	26460	26460					0.02861879573765691
HKAVTPTSDL	10	Unmodified	_HKAVTPTSDL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2725830078125	2	534.787838	1067.56112	0.10952	5.8572E-05	2.1872	0.0011697	2.2967	0.0012283	534.7891557867172	88.088	0.41309	88.06	87.89	88.303	-0.027657					22	9	3	0	0	0	0.03519	1	11077	11077		60.118	38.158	1	280430	+		22833	25017	15726	15761	26461	26461					0.03004537609331237
HKCGTELSI	9	Unmodified	_HKCGTELSI_					0	0	0		ENST00000300413.9_2_18:19209142-19209208:+|nuORF	ENST00000300413.9_2_18:19209142-19209208:+|nuORF	ENST00000300413.9_2_18:19209142-19209208:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.2494201660156	2	494.250034	986.485516	-0.85698	-0.00042356	0.60655	0.00029979	-0.25043	-0.00012377	494.2501748524921	44.964	0.6934	44.816	44.455	45.148	-0.1488					39	19	3	0	0	0	0.35646	1	4323	4323		68.787	0	1	2748400			22834	11902	15727	15762	26462	26462					-0.008267628425983276
HKDESYLRRVV	11	Unmodified	_HKDESYLRRVV_					0	0	0		nc|ENSG00000130826|O60832-2|DKC1;ENSG00000130826|ENST00000369550|DKC1	nc|ENSG00000130826|O60832-2|DKC1	nc|ENSG00000130826|O60832-2|DKC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7899475097656	3	467.924759	1400.75245	-0.22645	-0.00010596	0.68638	0.00032117	0.45993	0.00021521	467.9249035679077	27.049	1.0425	27.049	26.573	27.616	0					59	26	4	0	0	0	0.02477	1	1448	1448		28.577	6.0151	1	1295200			22835	4466	15728	15763	26463	26463					0.06810038640423954
HKERIRLLRQK	11	Unmodified	_HKERIRLLRQK_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7975769042969	3	492.979309	1475.9161	0.43201	0.00021297	-3.1367	-0.0015463	-2.7047	-0.0013333	492.97783640528496	51.192	0.61885	51.192	50.882	51.501	0					29	16	3	0	0	0	0.02486	1	5389	5389		8.7993	0.39205	1	123400			22836	6260	15729	15764	26464	26464					0.19717681202018866
HKFLSSPSP	9	Unmodified	_HKFLSSPSP_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.78961181640625	2	500.266542	998.51853	-0.2369	-0.00011851	3.7235	0.0018627	3.4866	0.0017442	500.26827072148774	92.659	0.55481	92.659	92.412	92.967	0					19	12	2	0	0	0	0.024292	1	11792	11792		49.442	10.189	1	138410	+		22837	20551	15730	15765	26465	26465					0.01921187271761937
HKFTYLGLRDN	11	Unmodified	_HKFTYLGLRDN_					0	0	0			REV__ENSG00000070614|ENST00000261797|NDST1	REV__ENSG00000070614|ENST00000261797|NDST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.2376403808594	3	455.242088	1362.70443	0.67498	0.00030728	0.36241	0.00016499	1.0374	0.00047227	455.24246517065245	58.816	0.67542	58.574	58.341	59.017	-0.24165					38	16	4	0	0	0	0.024809	1	6509	6509		17.167	3.6588	1	600430	+		22838	20431	15731	15766	26466	26466					0.037589647204185894
HKHFCTRLSGY	11	Carbamidomethyl (C)	_HKHFC(Carbamidomethyl (C))TRLSGY_	HKHFC(1)TRLSGY		HKHFC(41)TRLSGY		0	1	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	469.23248291015625	3	469.231306	1404.67209	-0.086671	-4.0669E-05	1.9971	0.00093709	1.9104	0.00089642	469.23224774198496	25.886	0.65934	25.715	25.457	26.116	-0.17078					43	18	4	0	0	0	0.98082	1	1277	1277		41.08	17.702	1	1547400			22839	7262	15732	15767	26467	26467	87				-0.014061459542517696
HKHFCTRLSGY	11	Carbamidomethyl (C)	_HKHFC(Carbamidomethyl (C))TRLSGY_					0	1	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	469.231306	1404.67209	-0.51873	-0.00024341	2.3467	0.0011011	1.8279	0.00085772	469.2323744508888	26.129	0.90046	25.893	25.677	26.578	-0.23603	0.087061	-0.00018838	NaN	41.08	46	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525300			22840	7262	15732	15767			87				-0.014061459542517696
HKHFCTRLSGY	11	Carbamidomethyl (C)	_HKHFC(Carbamidomethyl (C))TRLSGY_					0	1	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	469.231306	1404.67209	-1.3936	-0.00065394	2.8945	0.0013582	1.5008	0.00070424	469.23268790876375	25.973	0.73346	25.809	25.5	26.234	-0.16331	0.0034535	0.00058277	NaN	41.08	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1317900			22841	7262	15732	15767			87				-0.014061459542517696
HKHILACAS	9	Unmodified	_HKHILACAS_					0	0	0		nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2	nc|ENSG00000116731|Q13029-2|PRDM2	nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.26080322265625	2	490.260736	978.50692	-0.90997	-0.00044612	0.93887	0.00046029	0.028894	1.4166E-05	490.2620406764277	106.1	0.64438	105.97	105.75	106.4	-0.1328					40	27	2	0	0	0	0.98128	1	13190	13190		24.203	0	1	190480			22842	3572	15733	15768	26468	26468					0.016806669767788662
HKIGLEKELD	10	Unmodified	_HKIGLEKELD_					0	0	0			REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	590.7796020507812	2	591.32987	1180.64519	-0.12851	-7.599E-05	2.5389	0.0015013	2.4104	0.0014253	591.833294754029	84.907	1.4696	84.704	84.418	85.887	-0.20329					59	34	3	0	0	0	0.03519	1	10234	10234		33.922	16.454	1	191940	+		22843	21877	15734	15769	26469	26469					0.06209068706220933
HKILKTISV	9	Unmodified	_HKILKTISV_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7960815429688	2	519.837134	1037.65972	-0.94683	-0.0004922	-1.6554	-0.00086053	-2.6022	-0.0013527	519.8368828108565	48.345	0.44466	48.345	48.037	48.482	0					22	12	3	0	0	0	0.024541	1	4942	4942		10.866	0	1	152610			22844	7347	15735	15770	26470	26470					0.14239185645033103
HKIYEKKR	8	Unmodified	_HKIYEKKR_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3297729492188	2	551.330008	1100.64546	0.59508	0.00032809	-0.82872	-0.0004569	-0.23363	-0.00012881	551.3294572416751	18.626	0.79143	18.47	18.197	18.989	-0.15637					35	15	3	0	0	0	0.95679	1	334	334		44.117	1.6423	1	546230			22845	5537	15736	15771	26471	26471					0.09916533216733114
HKKLLRLN	8	Unmodified	_HKKLLRLN_					0	0	0			REV__ENSG00000188554|ENST00000590996|NBR1	REV__ENSG00000188554|ENST00000590996|NBR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3056640625	2	511.335093	1020.65563	-0.38374	-0.00019622	1.2812	0.00065513	0.89749	0.00045892	511.33557444153223	66.032	0.11536	66.062	66.006	66.121	0.030106					4	2	2	0	0	0	0.027866	1	7770	7770		19.36	7.1531	1	115640	+		22846	28044	15737	15772	26472	26472					0.14613140941969505
HKKRKYEL	8	Unmodified	_HKKRKYEL_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3300170898438	2	551.330008	1100.64546	0.31296	0.00017254	-0.38783	-0.00021382	-0.074868	-4.1277E-05	551.3296679926832	18.684	0.79121	18.48	18.163	18.954	-0.20371					36	15	3	0	0	0	1.0009	1	334	334		37.159	0	1	425420			22847	5596	15738	15773	26473	26473					0.09916533216733114
HKKRKYEL	8	Unmodified	_HKKRKYEL_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3299560546875	2	551.330008	1100.64546	2.5299	0.0013948	-2.6085	-0.0014381	-0.078559	-4.3312E-05	551.328419063258	18.725	0.59503	18.483	18.274	18.869	-0.24256					30	11	3	0	0	0	0.74904	2	316	306;316		63.306	7.8021	1	330930			22848	5596	15738	15773	26474;26475	26475					0.09916533216733114
HKKSPSSL	8	Unmodified	_HKKSPSSL_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	2	442.253434	882.492316	-0.75443	-0.00033365	-1.1232	-0.00049672	-1.8776	-0.00083037	442.25421544108906	31.235	1.2911	31.235	30.258	31.549	0					41	30	2	0	0	0	0.027866	1	2078	2078		29.15	17.639	1	59860			22849	5132	15739	15774	26476	26476					0.046369181002773985
HKKSPSSL	8	Unmodified	_HKKSPSSL_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.253434	882.492316	-0.57485	-0.00025423	1.1804	0.00052202	0.60552	0.00026779	442.2538688636927	31.126	0.488	30.885	30.585	31.073	-0.24109	-0.1208	0.00048294	NaN	29.15	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143190			22850	5132	15739	15774							0.046369181002773985
HKKSPSSL	8	Unmodified	_HKKSPSSL_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.253434	882.492316	-0.51603	-0.00022822	0.86729	0.00038356	0.35126	0.00015535	442.2537611370921	31.088	0.60234	30.903	30.533	31.136	-0.18503	-0.10255	0.00020602	NaN	29.15	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230430			22851	5132	15739	15774							0.046369181002773985
HKKSPSSL	8	Unmodified	_HKKSPSSL_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.253434	882.492316	0.080485	3.5595E-05	0.29352	0.00012981	0.374	0.0001654	442.25341931972207	31.152	0.47942	31	30.681	31.161	-0.15231	-0.0059608	-0.00030148	NaN	29.15	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256900			22852	5132	15739	15774							0.046369181002773985
HKLCKLIYPRI	11	Unmodified	_HKLCKLIYPRI_					0	0	0			REV__ENST00000503391.5_1_4:84182841-84188909:-|nuORF	REV__ENST00000503391.5_1_4:84182841-84188909:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.94854736328125	3	461.947959	1382.82205	-0.00026872	-1.2413E-07	0.90587	0.00041846	0.9056	0.00041834	461.94827243331906	107.09	0.67344	106.97	106.68	107.35	-0.1238					80	22	4	0	0	0	1.0532	1	13319	13319		24.232	0	1	1527500	+		22853	33953	15740	15775	26477	26477					0.1459482605548601
HKLCKLIYPRI	11	Unmodified	_HKLCKLIYPRI_					0	0	0			REV__ENST00000503391.5_1_4:84182841-84188909:-|nuORF	REV__ENST00000503391.5_1_4:84182841-84188909:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.9483947753906	3	461.947959	1382.82205	-1.2811	-0.00059179	2.0577	0.00095054	0.77662	0.00035876	461.948787177051	107.18	0.59211	107.05	106.76	107.35	-0.1346					79	23	4	0	0	0	1.0563	1	13303	13303		23.378	5.5448	1	1174300	+		22854	33953	15740	15775	26478	26478					0.1459482605548601
HKLHVVQLGW	10	Unmodified	_HKLHVVQLGW_					0	0	0			REV__ENST00000261798.9_1_5:148875922-148876000:-|nuORF	REV__ENST00000261798.9_1_5:148875922-148876000:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2352294921875	3	406.236497	1215.68766	-0.41967	-0.00017048	-2.7143	-0.0011027	-3.134	-0.0012731	406.2352348402459	29.142	0.75863	28.993	28.743	29.501	-0.14952					44	17	4	0	0	0	0.96822	1	1752	1752		49.536	7.2935	1	1022100	+		22855	29638	15741	15776	26479	26479					0.0884450862513404
HKLKEKEREL	10	Unmodified	_HKLKEKEREL_					0	0	0		ENSG00000135338|ENST00000369846|LCA5;LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.25665283203125	3	437.257738	1308.75138	-0.049713	-2.1737E-05	-0.63356	-0.00027703	-0.68327	-0.00029876	437.2574626155363	95.685	2.2253	95.548	94.254	96.479	-0.13689					148	51	3	0	0	0	1.1081	1	11801	11801		31.634	7.4025	1	454870			22856	4881	15742	15777	26480	26480					0.10935824271564343
HKLTKLTDFTT	11	Unmodified	_HKLTKLTDFTT_					0	0	0			REV__ENSG00000101353|ENST00000343811|MROH8	REV__ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.5775451660156	3	435.578477	1303.7136	1.4143	0.00061602	-3.0994	-0.00135	-1.6851	-0.00073401	435.57704527423255	110.37	0.77484	110.37	110.08	110.86	0					74	23	4	0	0	0	1.0592	1	14015	14015		22.562	0.87584	1	451640	+		22857	21225	15743	15778	26481	26481					0.07389313286057586
HKLTVKVSVDK	11	Unmodified	_HKLTVKVSVDK_					0	0	0			REV__ENSG00000019505|ENST00000020926|SYT13	REV__ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.3805541992188	2	627.382437	1252.75032	-0.17413	-0.00010925	-0.46748	-0.00029329	-0.64161	-0.00040254	627.3820106087511	110.71	0.52884	110.59	110.51	111.04	-0.12525					45	19	3	0	0	0	0.98904	1	13592	13592		39.253	2.8061	1	5899300	+		22858	19988	15744	15779	26482	26482					0.1340560990265658
HKLVVTTKP	9	Unmodified	_HKLVVTTKP_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2821960449219	2	511.821484	1021.62842	-0.20372	-0.00010427	-0.010373	-5.3093E-06	-0.21409	-0.00010958	511.8212736216571	62.226	1.1138	62.012	61.209	62.323	-0.21375					61	27	3	0	0	0	0.024541	1	6902	6902		23.523	7.0495	1	468210	+		22859	25074	15745	15780	26483	26483					0.11846612610941065
HKNNDIVF	8	Unmodified	_HKNNDIVF_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.77728271484375	2	493.756341	985.498129	-0.62986	-0.000311	1.6762	0.00082762	1.0463	0.00051663	493.75623131432496	36.234	0.76146	36.234	35.886	36.648	0					52	21	4	0	0	0	0.027866	1	2927	2927		55.504	11.387	1	344670	+		22860	19890	15746	15781	26484	26484					0.004800166119480309
HKNNDIVF	8	Unmodified	_HKNNDIVF_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.756341	985.498129	-0.73359	-0.00036221	1.6994	0.00083911	0.96586	0.0004769	493.75684198742175	36.263	0.78727	36.058	35.819	36.606	-0.20518	-0.062683	0.00070676	NaN	55.504	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235420	+		22861	19890	15746	15781							0.004800166119480309
HKNNDIVF	8	Unmodified	_HKNNDIVF_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.756341	985.498129	0.22401	0.00011061	0.46862	0.00023138	0.69263	0.00034199	493.75611752868605	36.285	0.60529	36.068	35.845	36.45	-0.21661	-0.052624	-0.00050869	NaN	55.504	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335890	+		22862	19890	15746	15781							0.004800166119480309
HKPFGWVF	8	Unmodified	_HKPFGWVF_					0	0	0			REV__nc|ENSG00000116396|Q03721-2|KCNC4	REV__nc|ENSG00000116396|Q03721-2|KCNC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2358093261719	2	509.268887	1016.52322	-0.35784	-0.00018224	4.3615	0.0022212	4.0036	0.0020389	509.27036717254805	31.293	0.33796	31.304	31.127	31.465	0.011797					12	7	2	0	0	0	0.027866	1	2075	2075		39.021	3.8208	1	71614	+		22863	33686	15747	15782	26485	26485					0.015621162051843385
HKPGTDQH	8	Unmodified	_HKPGTDQH_					0	0	0		nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7510986328125	2	460.222665	918.430778	-0.30517	-0.00014045	-1.3151	-0.00060523	-1.6202	-0.00074567	460.2219844576017	34.622	1.0145	34.673	34.005	35.02	0.050255					51	25	3	0	0	0	0.027866	1	2470	2470		47.916	21.223	1	424040			22864	7948	15748	15783	26486	26486					-0.03170013599003596
HKPLYVYV	8	Unmodified	_HKPLYVYV_					0	0	0			REV__ENST00000392547.6_1_2:175425573-175425708:-|nuORF	REV__ENST00000392547.6_1_2:175425573-175425708:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7616271972656	2	509.789653	1017.56475	-0.15739	-8.0234E-05	-1.4965	-0.00076289	-1.6539	-0.00084313	510.2919647987102	18.096	0.39641	17.889	17.714	18.11	-0.20669					10	7	2	0	0	0	0.027866	1	246	246		28.254	8.8943	1	12275	+		22865	31611	15749	15784	26487	26487					0.056672521738505566
HKQLFATL	8	Unmodified	_HKQLFATL_					0	0	0			REV__ENST00000472184.1_1_21:30378740-30380682:-|nuORF	REV__ENST00000472184.1_1_21:30378740-30380682:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2803039550781	2	479.279452	956.544351	0.83864	0.00040194	-4.2261	-0.0020255	-3.3875	-0.0016236	479.2772019259283	96.265	2.3127	96.128	95.156	97.468	-0.1367					130	52	5	0	0	0	0.97924	1	11945	11945		40.573	6.4001	1	1775700	+		22866	25063	15750	15785	26488	26488					0.0643408151404401
HKRKISPVKF	10	Unmodified	_HKRKISPVKF_					0	0	0		ENSG00000042088|ENST00000335725|TDP1	ENSG00000042088|ENST00000335725|TDP1	ENSG00000042088|ENST00000335725|TDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.8951721191406	3	413.927663	1238.76116	0.40514	0.0001677	3.3806	0.0013993	3.7857	0.001567	413.92857436840706	27.269	0.1466	27.269	27.215	27.361	0					5	3	2	0	0	0	0.03519	1	1477	1477		38.754	4.832	1	30610			22867	1076	15751	15786	26489	26489					0.1513305706760093
HKRLTSSN	8	Unmodified	_HKRLTSSN_					0	0	0			REV__ENSG00000213973|ENST00000596209|ZNF99	REV__ENSG00000213973|ENST00000596209|ZNF99	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7879333496094	2	471.759415	941.504277	0.054742	2.5825E-05	-0.38843	-0.00018325	-0.33369	-0.00015742	471.75933318611715	24.03	0.4293	24.03	23.694	24.123	0					14	9	2	0	0	0	0.027866	1	971	971		23.042	19.883	1	37494	+		22868	28760	15752	15787	26490	26490					0.031185348434632942
HKRRPPAMS	9	Unmodified	_HKRRPPAMS_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2982177734375	2	540.298185	1078.58182	-1.0759	-0.00058129	0.70537	0.00038111	-0.37051	-0.00020018	540.298537960825	21.799	1.3564	21.799	21.537	22.894	0					71	28	4	0	0	0	0.77768	1	726	726		40.778	1.972	1	1943800	+		22869	22489	15753	15788	26491	26491					0.04566849508000814
HKRRPPAMS	9	Unmodified	_HKRRPPAMS_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2981567382812	2	540.298185	1078.58182	-1.496	-0.00080829	1.2193	0.00065877	-0.27673	-0.00014952	540.2987705790721	21.734	1.4296	21.806	21.546	22.975	0.071487					69	29	4	0	0	0	0.62163	2	671	648;671		51.335	10.557	1	1298200	+		22870	22489	15753	15788	26492;26493	26493					0.04566849508000814
HKRRPPAMS	9	Unmodified	_HKRRPPAMS_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	540.298185	1078.58182	-1.496	-0.00080829	1.2193	0.00065877	-0.27673	-0.00014952	540.2987705790721	21.734	1.4296	21.806	21.546	22.975	0.071487	0.018211	0.00039792	NaN	51.335	69	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1298200	+		22871	22489	15753	15788							0.04566849508000814
HKRSRSRE	8	Unmodified	_HKRSRSRE_					0	0	0		ENST00000508482.5_1_17:48797176-48828101:+|nuORF;ENSG00000108848|ENST00000505658|LUC7L3	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7675170898438	2	528.294488	1054.57442	-0.97151	-0.00051324	3.4805	0.0018387	2.509	0.0013255	528.2960872197042	22.355	0.80648	22.429	22.125	22.931	0.073954					36	16	3	0	0	0	0.027866	1	780	780		29.15	0	1	123040			22872	2941	15754	15789	26494	26494					0.04931833231944438
HKSATKSKKMY	11	Unmodified	_HKSATKSKKMY_					0	0	0			REV__nc|ENSG00000170017|Q13740-4|ALCAM	REV__nc|ENSG00000170017|Q13740-4|ALCAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.77490234375	3	436.90794	1307.70199	-0.96464	-0.00042146	-3.0665	-0.0013398	-4.0312	-0.0017612	437.24130114267086	90.164	0.31675	90.009	89.824	90.14	-0.1552					11	7	2	0	0	0	0.024723	1	11000	11000		19.627	0	1	87383	+		22873	26428	15755	15790	26495	26495					0.06044792991133363
HKSIEDQLQP	10	Unmodified	_HKSIEDQLQP_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.811767578125	2	597.809302	1193.60405	-0.72866	-0.0004356	4.4154	0.0026396	3.6867	0.002204	597.8117225633295	73.811	0.54411	73.547	73.217	73.761	-0.26479					36	13	4	0	0	0	1.1179	1	8708	8708		19.997	0.73409	1	1406500			22874	854	15756	15791	26496	26496					0.014993076667678906
HKSIISQGKI	10	Unmodified	_HKSIISQGKI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.8365478515625	2	555.835123	1109.65569	-0.060099	-3.3405E-05	4.1476	0.0023054	4.0875	0.002272	555.8369335800946	106.39	0.67676	106.27	105.73	106.41	-0.1238					43	26	3	0	0	0	1.0236	1	13238	13238		42.864	0.46813	1	133600	+		22875	28058	15757	15792	26497	26497					0.10525096151332036
HKSLPLHKRNN	11	Unmodified	_HKSLPLHKRNN_					0	0	0		ZNF404|p.N162Sfs*7|1|0.59|ENSG00000176222|chr19:43873707-43873729|TACAAATGCTTTTCCACATTCAT/-|frameshift_variant;ENSG00000176222|ENST00000587539|ZNF404	ZNF404|p.N162Sfs*7|1|0.59|ENSG00000176222|chr19:43873707-43873729|TACAAATGCTTTTCCACATTCAT/-|frameshift_variant	ZNF404|p.N162Sfs*7|1|0.59|ENSG00000176222|chr19:43873707-43873729|TACAAATGCTTTTCCACATTCAT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.20819091796875	3	448.593343	1342.7582	-0.18666	-8.3734E-05	-0.92328	-0.00041418	-1.1099	-0.00049791	448.59283873802457	32.005	0.3196	32.017	31.863	32.182	0.011799					11	7	2	0	0	0	0.024813	1	2189	2189		20.03	7.073	1	81139			22876	8621	15758	15793	26498	26498					0.10053181942816991
HKSRLQHSY	9	Unmodified	_HKSRLQHSY_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.307373046875	2	578.304521	1154.59449	0.22895	0.0001324	0.52217	0.00030197	0.75112	0.00043437	578.3047626805482	110.1	0.30796	109.95	109.85	110.15	-0.14889					23	14	2	0	0	0	0.99726	1	13504	13504		20.947	0	1	86568	+		22877	21125	15759	15794	26499	26499					0.023375841719143864
HKTIRTQEHLF	11	Unmodified	_HKTIRTQEHLF_					0	0	0			REV__ENST00000268719.8_1_17:17968654-17968696:+|nuORF	REV__ENST00000268719.8_1_17:17968654-17968696:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2216796875	3	470.59312	1408.75753	0.80874	0.00038059	2.1726	0.0010224	2.9814	0.001403	470.5940036692302	68.161	0.64976	67.905	67.538	68.188	-0.25516					31	15	3	0	0	0	0.024727	1	7878	7878		36.318	2.2311	1	221810	+		22878	29781	15760	15795	26500	26500					0.06950342503091633
HKVHMYPK	8	Unmodified	_HKVHMYPK_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|133|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|133|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|133|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7957763671875	2	520.278929	1038.54331	-0.75566	-0.00039315	-3.3824	-0.0017598	-4.1381	-0.002153	520.2762177247622	48.78	0.4176	48.78	48.516	48.934	0					27	11	3	0	0	0	0.027866	1	4954	4954		17.365	0.89182	1	354240			22879	17851	15761	15796	26501	26501					0.02557543873490431
HKVLRILD	8	Unmodified	_HKVLRILD_					0	0	0			REV__ENSG00000111335|ENST00000392583|OAS2	REV__ENSG00000111335|ENST00000392583|OAS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.7953186035156	2	497.313826	992.613099	-0.67723	-0.00033679	-0.0028608	-1.4227E-06	-0.68009	-0.00033822	497.31360121320756	38.725	0.31277	38.504	38.375	38.688	-0.22149					9	7	2	0	0	0	0.027866	1	3243	3243		37.159	19.794	1	67202	+		22880	21910	15762	15797	26502	26502					0.1164974581373599
HKVRVGQYVRK	11	Unmodified	_HKVRVGQYVRK_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2779541015625	3	457.277355	1368.81024	0.91178	0.00041693	-4.2022	-0.0019216	-3.2904	-0.0015046	457.276747621906	97.175	1.7213	97.039	96.06	97.781	-0.13671					96	38	4	0	0	0	1.0788	1	12038	12038		17.167	1.2461	1	276490	+		22881	24733	15763	15798	26503	26503					0.1405834535653412
HKWRIYYKKRL	11	Unmodified	_HKWRIYYKKRL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7990112304688	3	530.984172	1589.93069	0.034151	1.8134E-05	0.11391	6.0482E-05	0.14806	7.8616E-05	531.3177124476949	102.66	1.0374	102.66	102.06	103.1	-0.0046005					29	24	2	0	0	0	0.024845	1	12997	12997		14.694	14.322	1	67973			22882	865	15764	15799	26504	26504					0.1593175335012802
HKWRIYYKKRL	11	Unmodified	_HKWRIYYKKRL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	530.984172	1589.93069	-0.97689	-0.00051871	1.9389	0.0010295	0.96201	0.00051081	531.3194379715786	102.57	0.30724	102.57	102.35	102.65	0	0.13817	0.00079783	NaN	14.694	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83899			22883	865	15764	15799							0.1593175335012802
HKWRIYYKKRL	11	Unmodified	_HKWRIYYKKRL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	530.984172	1589.93069	-0.44253	-0.00023498	0.80931	0.00042973	0.36678	0.00019476	530.9851958509233	102.35	0.59708	102.23	102.04	102.63	-0.12666	-0.20099	-0.0010016	NaN	14.694	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46393			22884	865	15764	15799							0.1593175335012802
HKWRIYYKKRL	11	Unmodified	_HKWRIYYKKRL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	530.984172	1589.93069	0.14431	7.6627E-05	3.3795	0.0017945	3.5238	0.0018711	531.3207058867001	102.44	0.2	102.26	102.09	102.29	-0.17178	-0.16473	0.0030927	NaN	14.694	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32697			22885	865	15764	15799							0.1593175335012802
HKYLLRPKLSW	11	Unmodified	_HKYLLRPKLSW_					0	0	0			REV__ENST00000375150.6_1_6:32116492-32119883:-|nuORF	REV__ENST00000375150.6_1_6:32116492-32119883:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.95489501953125	3	480.95399	1439.84014	1.1833	0.00056914	0.74601	0.0003588	1.9294	0.00092793	480.9543467869626	19.823	0.68526	19.59	19.325	20.01	-0.23345					45	13	5	0	0	0	1.0499	1	448	448		25.126	4.0938	1	428510	+		22886	29304	15765	15800	26505	26505					0.1378128430187644
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2603454589844	2	495.261791	988.509028	-0.98592	-0.00048829	-1.8459	-0.00091423	-2.8319	-0.0014025	495.2621166053913	29.492	0.83406	29.492	29.223	30.057	0					37	20	4	0	0	0	0.03849	1	1827	1827		134.81	60.836	1	555250			22887	8770	15766	15801	26506	26506					0.014314189862261628
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.26025390625	2	495.261791	988.509028	-0.55087	-0.00027283	1.0658	0.00052787	0.51496	0.00025504	495.26197127573346	29.494	1.0856	29.497	29.24	30.325	0.0031357					65	26	4	0	0	0	0.021872	1	1811	1811		148.04	76.747	1	760120			22888	8770	15766	15801	26507	26507					0.014314189862261628
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2609558105469	2	495.261791	988.509028	-0.54998	-0.00027238	1.189	0.00058888	0.63905	0.0003165	495.2620043217092	29.327	0.88442	29.406	29.165	30.049	0.078346					68	21	5	0	0	0	0.057894	1	1742	1742		125.81	57.027	1	865260			22889	8770	15766	15801	26508	26508					0.014314189862261628
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.261791	988.509028	-0.93807	-0.00046459	0.71058	0.00035192	-0.22749	-0.00011267	495.2620344784797	29.652	1.0228	29.406	29.011	30.034	-0.24524	-0.033709	0.00045539	NaN	148.04	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	634610			22890	8770	15766	15801							0.014314189862261628
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.261791	988.509028	-0.63642	-0.00031519	0.23616	0.00011696	-0.40026	-0.00019823	495.2618521028017	29.545	1.1003	29.372	29.07	30.17	-0.17258	-0.067676	-1.4537E-05	NaN	148.04	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	756990			22891	8770	15766	15801							0.014314189862261628
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.261791	988.509028	-0.20802	-0.00010302	-0.044693	-2.2135E-05	-0.25271	-0.00012516	495.2616168756855	29.616	0.96934	29.466	29.129	30.099	-0.14952	0.026463	-0.00029273	NaN	148.04	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790250			22892	8770	15766	15801							0.014314189862261628
HLAEKTSSL	9	Unmodified	_HLAEKTSSL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2697448730469	2	493.269281	984.52401	-0.97351	-0.0004802	0.6631	0.00032709	-0.31041	-0.00015311	493.2694763134611	25.637	0.70432	25.41	25.148	25.852	-0.22683					48	16	4	0	0	0	0.10174	1	1237	1237		110.12	24.76	1	1223800			22893	7346	15767	15802	26509	26509					0.031128660635772576
HLAEKTSSL	9	Unmodified	_HLAEKTSSL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.26983642578125	2	493.269281	984.52401	-0.12075	-5.9562E-05	-0.12126	-5.9812E-05	-0.24201	-0.00011937	493.2691033293356	25.368	0.74333	25.197	24.955	25.698	-0.17078					33	17	2	0	0	0	0.053401	2	1200	1188;1200		127.46	29.989	1	1098100			22894	7346	15767	15802	26510;26511	26511					0.031128660635772576
HLAEKTSSL	9	Unmodified	_HLAEKTSSL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2691650390625	2	493.269281	984.52401	0.053409	2.6345E-05	-0.10459	-5.1592E-05	-0.051183	-2.5247E-05	493.2689077018325	25.476	0.58973	25.304	25.076	25.666	-0.17151					39	13	4	0	0	0	0.053401	3	1186	1177;1186;1201		127.46	39.707	1	1068900			22895	7346	15767	15802	26512;26513;26514	26513					0.031128660635772576
HLAEQLTLLD	10	Unmodified	_HLAEQLTLLD_					0	0	0		ENST00000494550.5_1_6:33263795-33265760:-|nuORF;nc|ENSG00000237441|O15211-2|RGL2;ENST00000483151.5_1_6:33261379-33266279:-|nuORF;RGL2|p.L729Pfs*28|1|0.24|ENSG00000237441|chr6:33292252-33292253|-/A|frameshift_variant;ENSG00000237441|ENST00000497454|RGL2	ENST00000494550.5_1_6:33263795-33265760:-|nuORF	ENST00000494550.5_1_6:33263795-33265760:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.8434448242188	2	576.816596	1151.61864	-0.098228	-5.666E-05	3.9051	0.0022525	3.8069	0.0021959	576.8186849897022	90.26	0.74062	90.243	89.999	90.739	-0.016716					39	17	3	0	0	0	0.03519	1	11393	11393		19.997	0.89325	1	355440			22896	10747	15768	15803	26515	26515					0.04889379814903805
HLAGAHRIY	9	Unmodified	_HLAGAHRIY_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|211|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|211|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2886962890625	2	519.2856	1036.55665	-0.35868	-0.00018626	0.04846	2.5164E-05	-0.31022	-0.0001611	519.2853713589377	51.491	0.80351	51.215	50.589	51.393	-0.27643					32	19	2	0	0	0	0.75282	1	5292	5292		42.474	0.078325	1	2062800	+		22897	36235	15769	15804	26516	26516					0.039831179770771996
HLAHFICAGV	10	Unmodified	_HLAHFICAGV_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1	REV__ENSG00000159459|ENST00000290650|UBR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3314208984375	2	534.276386	1066.53822	-1.5284	-0.00081657	2.8974	0.001548	1.369	0.00073143	534.277859588834	44.029	0.51577	44.029	43.765	44.281	0					29	14	3	0	0	0	0.03519	1	4193	4193		44.531	26.207	1	594470	+		22898	25259	15770	15805	26517	26517					0.007612400108655493
HLAHILLSR	9	Unmodified	_HLAHILLSR_					0	0	0		ENSG00000162542|ENST00000294543|TMCO4;nc|ENSG00000162542|Q5TGY1-2|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3192138671875	2	530.324725	1058.6349	-1.4201	-0.00075309	3.371	0.0017877	1.9509	0.0010346	530.3263983898834	93.448	0.56701	93.308	93.004	93.571	-0.13996					26	12	3	0	0	0	0.024412	1	11516	11516		24.203	0	1	169070			22899	6951	15771	15806	26518	26518					0.10792550562314318
HLALALEAL	9	Unmodified	_HLALALEAL_					0	0	0		ENSG00000125741|ENST00000263275|OPA3	ENSG00000125741|ENST00000263275|OPA3	ENSG00000125741|ENST00000263275|OPA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.7869567871094	2	475.78711	949.559667	0.58463	0.00027816	-0.66578	-0.00031677	-0.081147	-3.8609E-05	475.78675770961814	85.794	1.9967	85.599	84.467	86.464	-0.19508					98	46	4	0	0	0	0.75282	1	10418	10418		42.474	1.9018	1	5254000			22900	4134	15772	15807	26519	26519					0.08286948311229025
HLAPDDVGDL	10	Unmodified	_HLAPDDVGDL_					0	0	0			REV__ENST00000355528.8_1_17:80887258-80888423:+|nuORF	REV__ENST00000355528.8_1_17:80887258-80888423:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.8049926757812	2	526.256371	1050.49819	-0.6304	-0.00033175	-3.4761	-0.0018293	-4.1065	-0.002161	526.2546466615979	43.197	0.34742	42.971	42.714	43.061	-0.22597					16	8	2	0	0	0	0.03519	1	3892	3892		58.782	0	1	337030	+		22901	30776	15773	15808	26520	26520					-0.025040281787141794
HLAQLRLF	8	Unmodified	_HLAQLRLF_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.73809814453125	2	499.300719	996.586885	-0.15303	-7.6408E-05	-4.3017	-0.0021479	-4.4548	-0.0022243	499.2990333021889	33.751	0.52321	33.524	33.277	33.8	-0.22674					26	12	3	0	0	0	0.027866	1	2416	2416		21.702	0	1	358450	+		22902	23757	15774	15809	26521	26521					0.08845476642272843
HLARPCFRS	9	Unmodified	_HLARPCFRS_					0	0	0			REV__ENST00000337288.9_2_2:96874439-96874535:-|nuORF	REV__ENST00000337288.9_2_2:96874439-96874535:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2671508789062	2	543.78491	1085.55527	-0.98595	-0.00053614	-2.2199	-0.0012071	-3.2058	-0.0017433	543.7830803425834	35.974	0.8144	35.769	35.428	36.242	-0.20518					41	22	3	0	0	0	0.024261	1	2846	2846		54.776	10.66	1	696620	+		22903	30561	15775	15810	26522	26522					0.01591160616681009
HLATPEVADL	10	Unmodified	_HLATPEVADL_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant	REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.3065185546875	2	533.282389	1064.55022	-0.86718	-0.00046245	4.0367	0.0021527	3.1695	0.0016903	533.2844153916476	48.435	1.5512	48.502	47.87	49.421	0.066795					74	42	3	0	0	0	0.03519	1	4994	4994		56.721	0	1	751030	+		22904	36427;19808;36193	15776	15811	26523	26523					0.02053135235018999
HLAVVKLMNTW	11	Unmodified	_HLAVVKLMNTW_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.14825439453125	3	437.912914	1310.71691	-0.38586	-0.00016897	-4.1903	-0.001835	-4.5762	-0.002004	438.24500313299114	43.485	0.28446	43.259	43.025	43.31	-0.22597					14	7	2	0	0	0	0.024723	1	3943	3943		28.577	0.93281	1	419180	+		22905	22308	15777	15812	26524	26524					0.07398284859095838
HLAVVKLMNTW	11	Unmodified	_HLAVVKLMNTW_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	437.912914	1310.71691	-0.066393	-2.9074E-05	1.2068	0.00052849	1.1404	0.00049941	437.9135164485023	43.201	0.21524	43.062	42.885	43.1	-0.13929	-0.0982	0.003357	NaN	28.577	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59747	+		22906	22308	15777	15812							0.07398284859095838
HLCMKIMS	8	Unmodified	_HLCMKIMS_					0	0	0			REV__ENST00000322038.5_2_18:72922897-72923047:+|nuORF	REV__ENST00000322038.5_2_18:72922897-72923047:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.596923828125	2	481.734651	961.45475	-0.30733	-0.00014805	3.2115	0.0015471	2.9042	0.001399	481.7361396424834	26.251	0.69262	26.015	25.843	26.535	-0.23603					32	19	2	0	0	0	0.027866	1	1328	1328		25.45	7.1258	1	484300	+		22907	30354	15778	15813	26525	26525					-0.027519557528307814
HLCTYEKQIC	10	Unmodified	_HLCTYEKQIC_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.1947937011719	3	413.194981	1236.56311	0.28599	0.00011817	0.073293	3.0284E-05	0.35928	0.00014845	413.194925540476	23.188	0.7576	22.986	22.64	23.398	-0.20193					51	16	5	0	0	0	1.0545	1	899	899		38.754	3.258	1	961690			22908	7223	15779	15814	26526	26526					-0.045704929686962714
HLCTYEKQIC	10	Unmodified	_HLCTYEKQIC_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.19476318359375	3	413.194981	1236.56311	-0.38705	-0.00015993	0.71256	0.00029443	0.32551	0.0001345	413.1952091488082	23.248	0.95339	23.068	22.697	23.651	-0.17989					52	21	4	0	0	0	1.0177	1	886	886		43.651	9.1499	1	1196800			22909	7223	15779	15814	26527	26527					-0.045704929686962714
HLCTYEKQIC	10	Unmodified	_HLCTYEKQIC_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.1947937011719	3	413.194981	1236.56311	1.7502	0.00072316	-1.3762	-0.00056864	0.37397	0.00015452	413.1942886782097	23.23	1.1745	23.039	22.664	23.838	-0.19117					53	26	4	0	0	0	0.811	1	881	881		59.931	12.703	1	1253400			22910	7223	15779	15814	26528	26528					-0.045704929686962714
HLCVVGLFY	9	Unmodified	_HLCVVGLFY_					0	0	0		ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3029174804688	2	525.775688	1049.53682	-0.28253	-0.00014855	2.4227	0.0012738	2.1401	0.0011252	525.7766974656229	42.527	0.48839	42.404	42.155	42.643	-0.12299					18	12	2	0	0	0	0.024389	1	3871	3871		39.021	9.18	1	164330			22911	10622	15780	15815	26529	26529					0.014036059221098185
HLCVVGLFY	9	Unmodified	_HLCVVGLFY_					0	0	0		ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	ENSG00000221933|ENST00000641663|OR2A25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3031616210938	2	525.775688	1049.53682	-0.3549	-0.0001866	0.37294	0.00019608	0.018039	9.4847E-06	525.7769468756838	42.645	0.49399	42.419	42.22	42.714	-0.22597					28	12	3	0	0	0	0.024289	1	3883	3883		60.404	10.962	1	160750			22912	10622	15780	15815	26530	26530					0.014036059221098185
HLDDVWAVL	9	Unmodified	_HLDDVWAVL_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.3319091796875	2	534.279649	1066.54475	-0.7662	-0.00040936	-3.6346	-0.0019419	-4.4008	-0.0023513	534.2775309161702	44.073	0.75871	44.11	43.888	44.647	0.0369					35	21	3	0	0	0	0.024487	1	4142	4142		40.573	25.909	1	561240			22913	18737	15781	15816	26531	26531					0.014134564432424668
HLDIAGSLE	9	Unmodified	_HLDIAGSLE_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.2798156738281	2	477.748182	953.481811	-0.94239	-0.00045023	-4.0869	-0.0019525	-5.0293	-0.0024027	477.7484544215788	37.848	0.67775	37.63	37.183	37.861	-0.21849					31	17	3	0	0	0	0.024436	1	3018	3018		30.504	3.7075	1	155020			22914	1774	15782	15817	26532	26532					0.0032089065518903226
HLDLAEKFI	9	Unmodified	_HLDLAEKFI_					0	0	0			REV__ENST00000550541.1_1_12:29302310-29304559:+|nuORF	REV__ENST00000550541.1_1_12:29302310-29304559:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3029174804688	2	543.303124	1084.5917	-0.2534	-0.00013767	-0.12115	-6.5822E-05	-0.37455	-0.0002035	543.3030164937979	74.606	1.4697	74.347	74.028	75.498	-0.25887					80	36	4	0	0	0	0.096521	1	9087	9087		111.65	1.5284	1	10820000	+		22915	34908	15783	15818	26533	26533					0.05278315994382865
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7972412109375	2	553.797675	1105.5808	0.022292	1.2345E-05	-0.055405	-3.0683E-05	-0.033113	-1.8338E-05	553.797488373303	80.604	2.2037	80.366	80.082	82.286	-0.23784					113	52	3	0	0	0	0.60698	2	9679	9655;9679		52.299	6.3472	1	2313500			22916	666	15784	15819	26534;26535	26535					0.03222913620084
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.79736328125	2	553.797675	1105.5808	0.26161	0.00014488	-0.57645	-0.00031924	-0.31484	-0.00017436	553.7972528393377	80.611	1.7813	80.405	80.092	81.873	-0.20633					102	42	4	0	0	0	0.33184	1	9696	9696		71.378	8.0716	1	2756800			22917	666	15784	15819	26536	26536					0.03222913620084
HLDLGILYY	9	Unmodified	_HLDLGILYY_					0	0	0		DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7967529296875	2	553.797675	1105.5808	-0.22071	-0.00012223	0.085943	4.7595E-05	-0.13476	-7.4632E-05	553.7976088334715	80.542	2.0042	80.396	80.076	82.08	-0.146					97	47	3	0	0	0	0.36105	2	9649	9649;9675		68.485	12.98	1	2813200			22918	666	15784	15819	26537;26538	26537					0.03222913620084
HLDLVLLQKW	10	Unmodified	_HLDLVLLQKW_					0	0	0		ENST00000354914.7_1_8:27849814-27850009:-|nuORF	ENST00000354914.7_1_8:27849814-27850009:-|nuORF	ENST00000354914.7_1_8:27849814-27850009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.5206298828125	3	422.251924	1263.73394	0.067289	2.8413E-05	-2.2566	-0.00095287	-2.1894	-0.00092446	422.2509561043375	31.61	1.2893	31.425	31.136	32.425	-0.18503					53	30	3	0	0	0	0.03519	1	2153	2153		32.751	6.6872	1	187380			22919	12634	15785	15820	26539	26539					0.11262528736551758
HLDQPPLL	8	Unmodified	_HLDQPPLL_					0	0	0			REV__ENSG00000197479|ENST00000354757|PCDHB11	REV__ENSG00000197479|ENST00000354757|PCDHB11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.7255554199219	2	466.763635	931.512717	-1.0934	-0.00051038	-1.336	-0.00062359	-2.4294	-0.001134	466.763193229101	43.738	0.28949	43.519	43.42	43.709	-0.21938					10	7	2	0	0	0	0.027866	1	4006	4006		26.796	9.4311	1	91989	+		22920	28308	15786	15821	26540	26540					0.04422088760088627
HLDSELEIS	9	Unmodified	_HLDSELEIS_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7667846679688	2	521.756204	1041.49785	-0.90717	-0.00047332	-0.38724	-0.00020205	-1.2944	-0.00067537	521.7537882897126	47.632	0.9173	47.632	47.326	48.243	0					48	27	4	0	0	0	0.024205	1	4809	4809		73.975	15.193	1	2070900			22921	4256;18250;18249	15787	15822	26541	26541					-0.021234478985661553
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.769287109375	2	564.769645	1127.52474	-0.279	-0.00015757	0.42375	0.00023932	0.14475	8.175E-05	564.769743769455	39.699	2.4484	39.549	39.242	41.691	-0.1497					170	64	7	0	0	0	0.013805	5	3414	3364;3376;3388;3401;3414		167.82	67.619	1	11079000			22922	2630	15788	15823	26542;26543;26544;26545;26546	26546					-0.03392339287370305
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.7698364257812	2	564.769645	1127.52474	-0.21847	-0.00012338	0.28221	0.00015938	0.06374	3.5998E-05	564.7697203874234	39.865	2.2923	39.64	39.223	41.515	-0.225					151	59	6	0	0	0	0.015769	6	3387	3377;3387;3399;3411;3425;3437		157.99	88.362	1	11512000			22923	2630	15788	15823	26547;26548;26549;26550;26551;26552	26548					-0.03392339287370305
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.76953125	2	564.769645	1127.52474	-0.45117	-0.00025481	0.66197	0.00037386	0.2108	0.00011905	564.7699316114013	39.871	2.6844	39.64	39.313	41.997	-0.2302					186	71	7	0	0	0	0.013018	5	3393	3370;3381;3393;3405;3419		173.85	74.629	1	12344000			22924	2630	15788	15823	26553;26554;26555;26556;26557	26555					-0.03392339287370305
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.769645	1127.52474	-0.4777	-0.00026979	3.0611	0.0017288	2.5834	0.001459	564.7710841877108	39.226	0.69221	39.226	38.902	39.594	0	-0.19276	0.001988	NaN	173.85	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284590			22925	2630	15788	15823							-0.03392339287370305
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.769645	1127.52474	-0.99956	-0.00056452	3.8911	0.0021976	2.8916	0.0016331	564.771476923443	39.225	0.77495	39.126	38.807	39.582	-0.098755	-0.29265	0.0029256	NaN	173.85	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239260			22926	2630	15788	15823							-0.03392339287370305
HLDTLTEHY	9	Unmodified	_HLDTLTEHY_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.769645	1127.52474	-1.4131	-0.00079808	4.0927	0.0023114	2.6796	0.0015133	564.7718472195929	39.307	0.74149	39.331	39.099	39.84	0.023727	-0.087561	0.0031533	NaN	173.85	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237530			22927	2630	15788	15823							-0.03392339287370305
HLEALKKKV	9	Unmodified	_HLEALKKKV_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.3005981445312	2	533.342584	1064.67061	-0.62946	-0.00033572	-4.4687	-0.0023834	-5.0982	-0.0027191	533.3400304763048	61.013	0.22351	61.013	60.921	61.144	0					9	5	2	0	0	0	0.024511	1	7040	7040		32.812	17.171	1	182360			22928	16048	15789	15824	26558	26558					0.1408658801931324
HLEEDLRAFL	10	Unmodified	_HLEEDLRAFL_					0	0	0			REV__ENSG00000204882|ENST00000377741|GPR20	REV__ENSG00000204882|ENST00000377741|GPR20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	622.3023071289062	2	621.827495	1241.64044	0.0356	2.2137E-05	-0.40008	-0.00024878	-0.36448	-0.00022664	621.827244454748	64.178	0.63965	63.95	63.662	64.302	-0.22773					31	15	3	0	0	0	0.03519	1	7274	7274		49.442	0	1	527170	+		22929	28642	15790	15825	26559	26559					0.029281845634614
HLEINHWTDF	10	Unmodified	_HLEINHWTDF_					0	0	0		ENST00000520429.5_1_6:99991289-99991409:-|nuORF	ENST00000520429.5_1_6:99991289-99991409:-|nuORF	ENST00000520429.5_1_6:99991289-99991409:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.7716369628906	3	437.875405	1310.60439	0.24564	0.00010756	4.3377	0.0018994	4.5833	0.0020069	438.21223764579	22.225	0.2382	22.036	21.863	22.102	-0.18894					6	4	2	0	0	0	0.03519	1	752	752		22.58	11.993	1	18918			22930	15979	15791	15826	26560	26560					-0.03849272613388166
HLEQCLFFIV	10	Unmodified	_HLEQCLFFIV_					0	0	0			REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF	REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	624.82666015625	2	624.825909	1247.63727	-0.61195	-0.00038237	2.4613	0.0015379	1.8493	0.0011555	624.8273920314392	61.334	1.1728	61.077	60.291	61.464	-0.25725					67	28	4	0	0	0	0.65054	1	6854	6854		71.296	1.6681	1	1803100	+		22931	35149	15792	15827	26561	26561					0.023352181851123532
HLERIGKKLN	10	Unmodified	_HLERIGKKLN_					0	0	0		KCNT2|p.A501Cfs*2|1|0.37|ENSG00000162687|chr1:196342131-196342132|-/A|frameshift_variant;ENST00000498426.5_1_1:196286396-196434478:-|nuORF;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2	KCNT2|p.A501Cfs*2|1|0.37|ENSG00000162687|chr1:196342131-196342132|-/A|frameshift_variant	KCNT2|p.A501Cfs*2|1|0.37|ENSG00000162687|chr1:196342131-196342132|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.36669921875	2	604.367121	1206.71969	-0.44133	-0.00026673	-0.063761	-3.8535E-05	-0.5051	-0.00030526	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.1314	1	13238	13238		21.96	0	1	5077600			22932	6976	15793	15828	26562	26562					0.12459876308275852
HLEWGEKEG	9	Unmodified	_HLEWGEKEG_					0	0	0			REV__ENST00000484302.3_1_17:46682131-46682287:-|nuORF	REV__ENST00000484302.3_1_17:46682131-46682287:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.798828125	2	542.756538	1083.49852	-1.0539	-0.00057201	-2.0998	-0.0011397	-3.1537	-0.0017117	542.7554245579238	32.199	0.504	32.041	31.819	32.323	-0.15772					14	11	2	0	0	0	0.024381	1	2154	2154		21.96	4.5949	1	76839	+		22933	33537	15794	15829	26563	26563					-0.0398860845884883
HLFFMKTS	8	Unmodified	_HLFFMKTS_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7137756347656	2	505.760038	1009.50552	-0.63605	-0.00032169	2.5733	0.0013015	1.9373	0.00097979	505.76109384811514	29.703	0.59197	29.458	29.185	29.777	-0.24524					20	13	2	0	0	0	0.027866	1	1813	1813		30.504	20.238	1	68738			22934	18475	15795	15830	26564	26564					0.001150328880385132
HLFFMKTS	8	Unmodified	_HLFFMKTS_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.760038	1009.50552	-1.5093	-0.00076333	0.87201	0.00044103	-0.63727	-0.00032231	505.76033935470684	29.562	0.48112	29.562	29.333	29.814	0	0.076036	-0.00072953	NaN	30.504	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107190			22935	18475	15795	15830							0.001150328880385132
HLFFMKTS	8	Unmodified	_HLFFMKTS_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.760038	1009.50552	-0.67761	-0.00034271	0.34699	0.00017549	-0.33062	-0.00016721	505.76029291514567	29.469	0.66655	29.472	29.166	29.833	0.0031357	-0.013935	-0.0012606	NaN	30.504	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100900			22936	18475	15795	15830							0.001150328880385132
HLFGCKFS	8	Unmodified	_HLFGCKFS_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.7462463378906	2	469.73128	937.448008	-0.077092	-3.6212E-05	-4.0199	-0.0018883	-4.097	-0.0019245	469.7292694188254	20.158	2.0633	19.934	19.384	21.448	-0.22344					59	41	2	0	0	0	0.027866	1	437	437		44.117	0	1	89320			22937	9891	15796	15831	26565	26565					-0.023218093175387367
HLFGQLADL	9	Unmodified	_HLFGQLADL_					0	0	0			REV__ENST00000434221.5_1_22:28315463-28390635:+|nuORF	REV__ENST00000434221.5_1_22:28315463-28390635:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2718200683594	2	507.274367	1012.53418	-0.40189	-0.00020387	-4.2223	-0.0021419	-4.6242	-0.0023457	507.27236134099223	31.183	1.1531	31.195	30.831	31.984	0.011799					65	27	4	0	0	0	0.62163	1	2056	2056		51.335	6.9583	1	3026800	+		22938	32322	15797	15832	26566	26566					0.028414737887942465
HLFPGDLKT	9	Unmodified	_HLFPGDLKT_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3265380859375	2	514.282192	1026.54983	-1.0115	-0.00052018	-2.8985	-0.0014906	-3.91	-0.0020108	514.2807103284953	39.527	1.0178	39.428	39.091	40.108	-0.098755					66	27	4	0	0	0	0.024263	1	3466	3466		60.972	8.0352	1	8790300			22939	2874	15798	15833	26567	26567					0.03761760305860662
HLFRGRKM	8	Unmodified	_HLFRGRKM_					0	0	0			REV__ENST00000460762.1_1_11:66384833-66385001:+|nuORF	REV__ENST00000460762.1_1_11:66384833-66385001:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7957153320312	2	522.79782	1043.58109	-1.0955	-0.00057271	-0.65797	-0.00034399	-1.7534	-0.00091669	522.7973178051591	38.956	2.4556	38.792	37.754	40.209	-0.16458					157	67	3	0	0	0	0.91239	1	3278	3278		50.025	8.5979	1	2272300	+		22940	32859	15799	15834	26568	26568					0.06104054858951713
HLFRGRKM	8	Unmodified	_HLFRGRKM_					0	0	0			REV__ENST00000460762.1_1_11:66384833-66385001:+|nuORF	REV__ENST00000460762.1_1_11:66384833-66385001:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7969970703125	2	522.79782	1043.58109	-0.042549	-2.2245E-05	-2.1322	-0.0011147	-2.1748	-0.001137	522.7967223459124	39.042	2.5625	38.817	37.785	40.347	-0.2257					174	69	4	0	0	0	0.91239	2	3253	3253;3301		50.025	11.003	1	2377000	+		22941	32859	15799	15834	26569;26570	26569					0.06104054858951713
HLFTKDIALVQ	11	Unmodified	_HLFTKDIALVQ_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.8704833984375	3	428.915201	1283.72377	0.62867	0.00026965	2.7561	0.0011821	3.3848	0.0014518	429.25073313689234	36.933	0.15526	36.74	36.618	36.774	-0.193					5	3	2	0	0	0	0.024735	1	2914	2914		27.644	0	1	27527			22942	5048	15800	15835	26571	26571					0.09325921011304672
HLGDSHSHDI	10	Unmodified	_HLGDSHSHDI_					0	0	0			REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.303955078125	2	559.254694	1116.49483	-1.237	-0.00069178	1.0807	0.00060436	-0.15632	-8.7421E-05	559.2550039540934	46.155	1.0886	46.003	45.611	46.7	-0.15156					34	30	2	0	0	0	0.03519	1	4564	4564		29.15	3.6994	1	111380	+		22943	28244	15801	15836	26572	26572					-0.058752782327019304
HLGHLGVNLR	10	Unmodified	_HLGHLGVNLR_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|36|3|anti-sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|36|3|anti-sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|36|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3243408203125	2	558.325257	1114.63596	0.61136	0.00034134	-1.772	-0.00098937	-1.1607	-0.00064803	558.3242932364805	98.782	1.2337	98.646	98.19	99.423	-0.13626					48	29	3	0	0	0	1.1166	1	12219	12219		30.504	6.3009	1	245640			22944	17825	15802	15837	26573	26573					0.08322764931222082
HLGLQEFI	8	Unmodified	_HLGLQEFI_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENSG00000163608|ENST00000314400|NEPRO;ENST00000462295.5_1_3:112729957-112738391:-|nuORF;ENST00000470663.1_1_3:112731453-112738391:-|nuORF;ENST00000494891.5_1_3:112731453-112738391:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.281982421875	2	478.763635	955.512717	0.15586	7.462E-05	1.759	0.00084215	1.9149	0.00091677	478.7666064032072	81.28	0.40967	81.28	81.138	81.548	0					10	9	2	0	0	0	0.027866	1	10133	10133		26.796	0	1	42331			22945	7113	15803	15838	26574	26574					0.03318088760090632
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.2539978027344	2	476.253966	950.493378	0.57959	0.00027603	-0.97709	-0.00046534	-0.3975	-0.00018931	476.25354709644716	27.055	1.7012	27.055	26.573	28.274	0					124	43	5	0	0	0	0.14024	5	1427	1406;1416;1427;1439;1451		101.6	37.033	1	17312000			22946	18840	15804	15839	26575;26576;26577;26578;26579	26577					0.01615132469191849
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.2539367675781	2	476.253966	950.493378	0.0072139	3.4356E-06	-0.35834	-0.00017066	-0.35113	-0.00016723	476.25381609627397	27.03	2.3706	27.017	26.496	28.867	-0.012983					139	59	5	0	0	0	0.19099	4	1400	1400;1411;1423;1435		90.37	21.583	1	17484000			22947	18840	15804	15839	26580;26581;26582;26583	26580					0.01615132469191849
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.2539367675781	2	476.253966	950.493378	-0.68429	-0.00032589	0.34564	0.00016461	-0.33864	-0.00016128	476.25416158960576	26.889	1.9551	26.97	26.456	28.411	0.081293					123	49	5	0	0	0	0.12602	3	1348	1348;1360;1372		104.75	36.262	1	17419000			22948	18840	15804	15839	26584;26585;26586	26584					0.01615132469191849
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.25433349609375	2	476.253966	950.493378	-0.36851	-0.00017551	0.051193	2.4381E-05	-0.31732	-0.00015112	476.2537677827557	27.108	0.8919	26.952	26.629	27.521	-0.15664					52	20	3	0	0	0	0.45795	1	1444	1444		62.107	1.8135	1	1506000			22949	18840	15804	15839	26587	26587					0.01615132469191849
HLGVVKLLVL	10	Unmodified	_HLGVVKLLVL_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;nc|ENSG00000154237|Q38SD2-2|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8344116210938	2	545.870977	1089.7274	-0.77221	-0.00042153	1.7697	0.00096603	0.99749	0.0005445	545.8719540038138	49.018	0.21761	48.738	48.538	48.756	-0.27977					6	5	2	0	0	0	0.03519	1	4876	4876		12.207	0	1	84603			22950	6392	15805	15840	26588	26588					0.1861263557584607
HLHCKRTQ	8	Unmodified	_HLHCKRTQ_					0	0	0		ENST00000379619.5_1_2:28639379-28639508:+|nuORF	ENST00000379619.5_1_2:28639379-28639508:+|nuORF	ENST00000379619.5_1_2:28639379-28639508:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7900085449219	2	511.76926	1021.52397	-0.58748	-0.00030066	-4.3061	-0.0022037	-4.8936	-0.0025044	511.7662061809093	42.902	0.46283	42.676	42.41	42.873	-0.22597					16	11	2	0	0	0	0.027866	1	3906	3906		24.203	5.0992	1	96948			22951	13275	15806	15841	26589	26589					0.01406587582573593
HLHLSSHHL	9	Unmodified	_HLHLSSHHL_					0	0	0		CUL3-FAM124B|2|fusion;CUL3-FAM124B|1|fusion;ENSG00000124019|ENST00000409685|FAM124B	CUL3-FAM124B|2|fusion	CUL3-FAM124B|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8329467773438	2	540.788507	1079.56246	0.051704	2.7961E-05	0.79662	0.0004308	0.84833	0.00045876	540.7884102065152	19.236	0.34744	19.075	18.935	19.282	-0.16079					8	6	2	0	0	0	0.024517	1	386	386		26.796	8.4717	1	11961			22952	608	15807	15842	26590	26590					0.02586216488748505
HLIASIKFVS	10	Unmodified	_HLIASIKFVS_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2589721679688	2	557.834591	1113.65463	0.54507	0.00030406	-1.9342	-0.001079	-1.3892	-0.00077492	557.8345408593789	79.462	0.37443	79.216	78.987	79.362	-0.2465					11	8	2	0	0	0	0.03519	1	9493	9493		26.693	5.746	1	49875	+		22953	37783	15808	15843	26591	26591					0.10234881782434968
HLIASIKFVS	10	Unmodified	_HLIASIKFVS_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.834591	1113.65463	-1.2787	-0.00071333	0.73209	0.00040838	-0.54666	-0.00030494	557.8353203512046	79.522	0.37534	79.35	79.15	79.525	-0.17226	0.067113	0.00083377	NaN	26.693	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41951	+		22954	37783	15808	15843							0.10234881782434968
HLIITKVF	8	Unmodified	_HLIITKVF_					0	0	0			REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2592468261719	2	485.807845	969.601138	0.10072	4.8929E-05	-3.835	-0.0018631	-3.7343	-0.0018141	485.80562961173183	21.502	0.2934	21.311	21.078	21.372	-0.19072					7	5	2	0	0	0	0.027866	1	652	652		42.474	17.024	1	24890	+		22955	24392	15809	15844	26592	26592					0.11512129070558785
HLIKKASR	8	Unmodified	_HLIKKASR_					0	0	0			REV__ENST00000479644.1_1_6:31940861-31940969:+|nuORF	REV__ENST00000479644.1_1_6:31940861-31940969:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.7693786621094	2	476.806168	951.597784	0.19695	9.3908E-05	-0.71497	-0.0003409	-0.51801	-0.00024699	476.80565758386484	25.445	0.24672	25.274	25.118	25.364	-0.17151					8	5	2	0	0	0	0.027866	1	1189	1189		37.159	11.709	1	31227	+		22956	33404	15810	15845	26593	26593					0.12004879016558334
HLIKLAIE	8	Unmodified	_HLIKLAIE_					0	0	0			REV__ENSG00000177613|ENST00000331173|CSTF2T	REV__ENSG00000177613|ENST00000331173|CSTF2T	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.7462463378906	2	468.797478	935.580402	0.38936	0.00018253	-2.6439	-0.0012395	-2.2546	-0.0010569	468.7960400203197	20.028	0.44034	19.804	19.533	19.973	-0.22344					12	8	3	0	0	0	0.027866	1	437	437		24.203	6.8378	1	35980	+		22957	27129	15811	15846	26594	26594					0.11003538690874848
HLIKLIKC	8	Unmodified	_HLIKLIKC_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2596130371094	2	484.309698	966.604843	0.14889	7.211E-05	0.68314	0.00033085	0.83203	0.00040296	484.3099873478311	21.378	0.73374	21.187	20.686	21.42	-0.19072					26	14	3	0	0	0	0.027866	1	616	616		29.842	9.3597	1	144180	+		22958	22245	15812	15847	26595	26595					0.12020475572762734
HLILRYWV	8	Unmodified	_HLILRYWV_					0	0	0		ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENST00000567757.1_1_16:21974091-21974253:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.8135375976562	2	550.324194	1098.63383	-1.3123	-0.00072219	3.6017	0.0019821	2.2894	0.0012599	550.3254635058432	39.175	0.87768	39.199	38.648	39.526	0.023727					42	23	3	0	0	0	0.027866	1	3206	3206		20.482	5.8177	1	625230			22959	16968	15813	15848	26596	26596					0.08846336193391835
HLILRYWV	8	Unmodified	_HLILRYWV_					0	0	0		ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENST00000567757.1_1_16:21974091-21974253:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.324194	1098.63383	-0.62037	-0.0003414	4.4901	0.002471	3.8698	0.0021296	550.3267941556446	38.979	0.45666	38.979	38.797	39.254	0	-0.032546	-0.00020376	NaN	28.254	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520430			22960	16968	15813	15848							0.08846336193391835
HLILRYWV	8	Unmodified	_HLILRYWV_					0	0	0		ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENST00000567757.1_1_16:21974091-21974253:+|nuORF	ENST00000567757.1_1_16:21974091-21974253:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.324194	1098.63383	-1.0198	-0.00056124	4.9935	0.0027481	3.9737	0.0021868	550.3270677595065	38.955	0.60576	38.856	38.629	39.234	-0.098755	-0.15537	0.00035028	NaN	28.254	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568770			22961	16968	15813	15848							0.08846336193391835
HLINYIIFL	9	Unmodified	_HLINYIIFL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.3397216796875	2	573.33951	1144.66447	0.078313	4.49E-05	0.6161	0.00035324	0.69441	0.00039814	573.3400338240002	91.946	1.0947	91.805	91.442	92.537	-0.1413					65	25	4	0	0	0	0.44472	1	11272	11272		62.978	6.2574	1	529060			22962	7568	15814	15849	26597	26597					0.09792069787795299
HLINYIIFL	9	Unmodified	_HLINYIIFL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	573.33951	1144.66447	-1.4387	-0.00082485	1.8329	0.0010509	0.3942	0.00022601	573.3405947533357	91.834	1.7724	91.686	91.31	93.083	-0.1487	-0.057608	0.0006616	NaN	62.978	74	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	574150			22963	7568	15814	15849							0.09792069787795299
HLINYIIFL	9	Unmodified	_HLINYIIFL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	573.33951	1144.66447	-0.34121	-0.00019563	0.75437	0.00043251	0.41316	0.00023688	573.3399611229474	91.863	1.7316	91.739	91.371	93.102	-0.12341	-0.0037761	-0.0005751	NaN	62.978	92	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591980			22964	7568	15814	15849							0.09792069787795299
HLIRAIVLD	9	Unmodified	_HLIRAIVLD_					0	0	0			REV__ENSG00000105926|ENST00000222644|PALS2	REV__ENSG00000105926|ENST00000222644|PALS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.8097534179688	2	525.326934	1048.63931	0.038611	2.0283E-05	3.6115	0.0018972	3.6501	0.0019175	525.3286181625014	56.096	1.1349	55.88	55.447	56.582	-0.21607					67	29	3	0	0	0	0.024523	1	6035	6035		37.159	17.162	1	1088300	+		22965	21574	15815	15850	26598	26598					0.11694014985209833
HLIRHKRIHTE	11	Unmodified	_HLIRHKRIHTE_					0	0	0		ENSG00000152926|ENST00000282869|ZNF117	ENSG00000152926|ENST00000282869|ZNF117	ENSG00000152926|ENST00000282869|ZNF117	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7431335449219	3	480.616259	1438.82695	-0.42467	-0.0002041	-0.80617	-0.00038746	-1.2308	-0.00059156	480.61587945080987	45.305	0.55099	45.156	44.83	45.381	-0.1488					27	15	2	0	0	0	0.024865	1	4407	4407		12.433	9.7448	1	344770			22966	6306	15816	15851	26599	26599					0.1250884624248556
HLISRTQV	8	Unmodified	_HLISRTQV_					0	0	0			REV__ENSG00000170899|ENST00000370963|GSTA4	REV__ENSG00000170899|ENST00000370963|GSTA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.27984619140625	2	477.279983	952.545414	0.33661	0.00016066	-0.2932	-0.00013994	0.043413	2.072E-05	477.27969604357287	37.564	0.39388	37.371	37.114	37.508	-0.193					18	9	2	0	0	0	0.845	1	3019	3019		55.504	4.1688	1	2164000	+		22967	26517	15817	15852	26600	26600					0.06724295882952447
HLITLNGLI	9	Unmodified	_HLITLNGLI_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2627868652344	2	497.30821	992.601866	-0.38936	-0.00019363	-0.15853	-7.8838E-05	-0.54789	-0.00027247	497.3079292308143	48.992	0.74169	48.81	48.373	49.115	-0.18206					25	19	2	0	0	0	0.024205	1	4883	4883		63.306	11.971	1	172240	+		22968	29223	15818	15853	26601	26601					0.10526923719623937
HLIWTYDAP	9	Unmodified	_HLIWTYDAP_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3179321289062	2	558.279649	1114.54475	-0.11035	-6.1605E-05	-3.8238	-0.0021348	-3.9342	-0.0021964	558.277237132876	69.256	1.1298	69.256	68.825	69.954	0					79	28	5	0	0	0	0.024443	1	8380	8380		44.531	9.3304	1	878370			22969	5731	15819	15854	26602	26602					-0.007945435567762615
HLKCVGKRLT	10	Unmodified	_HLKCVGKRLT_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.7772216796875	2	577.844968	1153.67538	-0.75019	-0.00043349	-2.4093	-0.0013922	-3.1595	-0.0018257	577.8433474543302	46.861	0.40508	46.668	46.481	46.886	-0.19387					22	11	3	0	0	0	0.03519	1	4517	4517		21.96	3.6355	1	245490			22970	4299	15820	15855	26603	26603					0.10469148890433644
HLKESHEM	8	Oxidation (M)	_HLKESHEM(Oxidation (M))_		HLKESHEM(1)		HLKESHEM(68)	0	0	1		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.7379760742188	2	513.737291	1025.46003	-0.2226	-0.00011436	0.2136	0.00010973	-0.0090048	-4.6261E-06	513.7373724313422	16.637	0.20469	16.429	16.315	16.519	-0.20777					12	6	2	0	0	0	0.68535	1	79	79		68.485	12.98	1	56747			22971	1583	15821	15856	26604	26604		55			-0.05168237365001005
HLKKQQKELN	10	Unmodified	_HLKKQQKELN_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	633.3684692382812	2	633.369861	1264.72517	-0.31781	-0.00020129	-0.76957	-0.00048742	-1.0874	-0.00068872	633.3692884562681	93.071	1.2951	93.079	92.225	93.52	0.0077286					82	30	4	0	0	0	0.03519	1	11791	11791		24.519	14.254	1	1519500			22972	15486	15822	15857	26605	26605					0.10339555100108555
HLKLGEVSV	9	Unmodified	_HLKLGEVSV_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2900695800781	2	491.290017	980.565481	-0.40572	-0.00019932	-0.088829	-4.3641E-05	-0.49455	-0.00024297	491.28989180310776	50.195	1.6933	50.195	49.842	51.535	0					95	48	4	0	0	0	0.14024	4	5254	5231;5242;5254;5266		101.6	50.747	1	6832800			22973	4651	15823	15858	26606;26607;26608;26609	26608					0.07442046822905013
HLKLGEVSV	9	Unmodified	_HLKLGEVSV_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2898254394531	2	491.290017	980.565481	-0.069812	-3.4298E-05	-0.52469	-0.00025777	-0.5945	-0.00029207	491.289714800159	50.393	1.7825	50.241	49.889	51.672	-0.1512					125	51	6	0	0	0	0.16638	4	5273	5237;5248;5260;5273		95.815	34.345	1	7351600			22974	4651	15823	15858	26610;26611;26612;26613	26613					0.07442046822905013
HLKLGEVSV	9	Unmodified	_HLKLGEVSV_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2901611328125	2	491.290017	980.565481	-0.15402	-7.5669E-05	-0.46323	-0.00022758	-0.61725	-0.00030325	491.28978683951067	50.092	1.9711	50.173	49.737	51.709	0.08099					97	56	4	0	0	0	0.26966	3	5159	5149;5159;5173		79.713	18.741	1	7289200			22975	4651	15823	15858	26614;26615;26616	26615					0.07442046822905013
HLKLGEVSV	9	Unmodified	_HLKLGEVSV_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.290017	980.565481	-0.057225	-2.8114E-05	5.6723	0.0027867	5.6151	0.0027586	491.2897426575449	50.626	2.4293	50.347	49.914	52.344	-0.27977	0.10759	0.005851	NaN	101.6	116	64	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	882090			22976	4651	15823	15858							0.07442046822905013
HLKNKHGL	8	Unmodified	_HLKNKHGL_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523243.5_1_8:135490727-135577256:-|nuORF	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7826232910156	2	473.782693	945.550834	1.5177	0.00071904	-1.1754	-0.00055691	0.34222	0.00016214	473.7818759535711	17.488	0.3484	17.334	17.159	17.507	-0.15403					13	6	3	0	0	0	0.95417	1	194	194		44.531	3.9584	1	96378			22977	1346	15824	15859	26617	26617					0.07588019465413254
HLKPLEEKI	9	Unmodified	_HLKPLEEKI_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8300170898438	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.83071	1	11147	11147		37.159	0.71236	1	4896800	+		22978	25604	15825	15860	26618	26618					0.10094577919812764
HLKPLVPSL	9	Unmodified	_HLKPLVPSL_					0	0	0		ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.305419921875	2	502.318577	1002.6226	0.51827	0.00026033	-0.74614	-0.0003748	-0.22787	-0.00011446	502.31805517570353	68.233	0.64767	67.978	67.7	68.348	-0.25517					31	15	3	0	0	0	0.024535	1	7911	7911		25.45	4.5032	1	893440			22979	9635	15826	15861	26619	26619					0.12139514099283133
HLKPLVPSL	9	Unmodified	_HLKPLVPSL_					0	0	0		ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.318577	1002.6226	0.29835	0.00014986	-0.694	-0.00034861	-0.39565	-0.00019874	502.31812733718755	68.159	0.68285	67.926	67.716	68.399	-0.23376	0.0022268	-0.00016319	NaN	25.45	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	895810			22980	9635	15826	15861							0.12139514099283133
HLKPLVPSL	9	Unmodified	_HLKPLVPSL_					0	0	0		ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	ENSG00000187546|ENST00000342526|AGMO	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.318577	1002.6226	0.029386	1.4761E-05	-0.29979	-0.00015059	-0.2704	-0.00013583	502.31826101269786	68.105	0.63904	67.867	67.669	68.308	-0.23814	-0.056388	0.00023284	NaN	25.45	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736180			22981	9635	15826	15861							0.12139514099283133
HLKQHERI	8	Unmodified	_HLKQHERI_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.806884765625	2	530.804157	1059.59376	3.0719	0.0016306	-3.6262	-0.0019248	-0.55438	-0.00029427	530.8017967275542	18.442	0.25035	18.199	18.074	18.324	-0.24256					6	4	2	0	0	0	0.99042	1	277	277		38.806	0	1	38114			22982	10038	15827	15862	26620	26620					0.0663478952285459
HLKQHERI	8	Unmodified	_HLKQHERI_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.804157	1059.59376	0.67658	0.00035913	-2.7768	-0.0014739	-2.1002	-0.0011148	530.802416743949	18.329	0.29592	18.172	18.05	18.346	-0.15637	-0.018335	-0.00066268	NaN	38.806	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29706			22983	10038	15827	15862							0.0663478952285459
HLKQHERI	8	Unmodified	_HLKQHERI_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.804157	1059.59376	-0.28812	-0.00015294	-1.0838	-0.00057531	-1.372	-0.00072825	530.8035229146893	18.404	0.29734	18.201	18.064	18.361	-0.20371	0.009832	0.0011345	NaN	38.806	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24542			22984	10038	15827	15862							0.0663478952285459
HLKQQHHQPM	10	Oxidation (M)	_HLKQQHHQPM(Oxidation (M))_		HLKQQHHQPM(1)		HLKQQHHQPM(41)	0	0	1		nc|ENSG00000092929|Q70J99-3|UNC13D;ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF	nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.8852233886719	3	433.884017	1298.63022	-0.41889	-0.00018175	3.0578	0.0013267	2.6389	0.001145	433.88521104674703	20.023	1.7554	20.023	19.782	21.537	0					80	35	3	0	0	0	1.0344	1	488	488		41.427	10.858	1	291200			22985	1999	15828	15863	26621	26621		71			-0.007147016427552444
HLKRTPATAE	10	Unmodified	_HLKRTPATAE_					0	0	0		nc|ENSG00000164089|Q8TBG4-3|ETNPPL;nc|ENSG00000164089|Q8TBG4-2|ETNPPL;ENSG00000164089|ENST00000296486|ETNPPL	nc|ENSG00000164089|Q8TBG4-3|ETNPPL	nc|ENSG00000164089|Q8TBG4-3|ETNPPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2684936523438	2	562.314554	1122.61456	-0.014707	-8.27E-06	3.549	0.0019956	3.5343	0.0019874	562.3169237801175	79.575	0.20895	79.424	79.278	79.487	-0.15051					5	4	2	0	0	0	0.03519	1	9495	9495		39.253	3.6345	1	31380			22986	7209	15829	15864	26622	26622					0.05815335111856257
HLKSLRAGP	9	Unmodified	_HLKSLRAGP_					0	0	0			REV__chr15:90217602-90219793|163|20.67|0.39|5.74|+|2|SEMA4B,SEMA4B|1	REV__chr15:90217602-90219793|163|20.67|0.39|5.74|+|2|SEMA4B,SEMA4B|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.79559326171875	2	489.795801	977.577048	-1.4057	-0.00068851	1.3076	0.00064047	-0.09807	-4.8034E-05	489.7963349901037	22.074	1.1454	22.148	21.832	22.978	0.073954					55	23	4	0	0	0	0.94809	1	714	714		29.15	0	1	982240	+		22987	19380	15830	15865	26623	26623					0.0873628863690783
HLLAERRA	8	Unmodified	_HLLAERRA_					0	0	0			REV__ENSG00000161509|ENST00000293190|GRIN2C	REV__ENSG00000161509|ENST00000293190|GRIN2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2534484863281	2	483.2856	964.556647	-0.18022	-8.7096E-05	-3.9452	-0.0019067	-4.1254	-0.0019938	483.28374658404056	53.078	1.1054	53.078	52.513	53.618	0					45	29	2	0	0	0	0.027866	1	5639	5639		19.36	1.0356	1	284970	+		22988	25384	15831	15866	26624	26624					0.07295117977082555
HLLAERRA	8	Unmodified	_HLLAERRA_					0	0	0			REV__ENSG00000161509|ENST00000293190|GRIN2C	REV__ENSG00000161509|ENST00000293190|GRIN2C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.2856	964.556647	-0.45022	-0.00021758	-3.582	-0.0017311	-4.0322	-0.0019487	483.2838465860371	53.198	1.0361	53.05	52.53	53.566	-0.14723	-0.032708	0.00022723	NaN	19.36	42	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294980	+		22989	25384	15831	15866							0.07295117977082555
HLLAERRA	8	Unmodified	_HLLAERRA_					0	0	0			REV__ENSG00000161509|ENST00000293190|GRIN2C	REV__ENSG00000161509|ENST00000293190|GRIN2C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.2856	964.556647	-0.33459	-0.0001617	-3.8727	-0.0018716	-4.2073	-0.0020333	483.28384503767967	53.025	1.1032	53.121	52.489	53.592	0.095669	0.037668	-5.3792E-05	NaN	19.36	52	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273560	+		22990	25384	15831	15866							0.07295117977082555
HLLAPALHS	9	Unmodified	_HLLAPALHS_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7733459472656	2	479.777077	957.5396	-0.57691	-0.00027679	1.6404	0.00078703	1.0635	0.00051024	479.7802269405202	93.751	0.93001	93.757	93.476	94.406	0.0059891					34	22	2	0	0	0	0.024541	1	11803	11803		12.959	0	1	169630	+		22991	22489	15832	15867	26625	26625					0.05913197371273782
HLLASISFI	9	Unmodified	_HLLASISFI_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.79632568359375	2	500.794935	999.575317	-0.071704	-3.5909E-05	1.1475	0.00057464	1.0757	0.00053873	500.79539648008245	66.623	1.22	66.623	66.348	67.568	0					71	32	3	0	0	0	1.0051	1	7924	7924		19.36	1.0356	1	4883400	+		22992	20901	15833	15868	26626	26626					0.07551234828292763
HLLDIAMGV	9	Oxidation (M)	_HLLDIAM(Oxidation (M))GV_		HLLDIAM(1)GV		HLLDIAM(58)GV	0	0	1		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.76312255859375	2	492.762778	983.511002	-0.64557	-0.00031811	0.57721	0.00028443	-0.068358	-3.3684E-05	492.7629276172255	73.224	0.97887	72.948	72.626	73.605	-0.2769					50	23	3	0	0	0	0.52323	1	8591	8591		57.811	22.611	1	697570			22993	9837	15834	15869	26627	26627		405			0.018587116798357783
HLLDIAMGV	9	Oxidation (M)	_HLLDIAM(Oxidation (M))GV_		HLLDIAM(1)GV		HLLDIAM(68)GV	0	0	1		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.7623596191406	2	492.762778	983.511002	-0.24228	-0.00011939	0.061999	3.0551E-05	-0.18029	-8.8838E-05	492.76265405236995	73.183	1.0973	72.918	72.469	73.566	-0.26479					55	26	3	0	0	0	0.36105	1	8601	8601		68.485	20.569	1	860220			22994	9837	15834	15869	26628	26628		405			0.018587116798357783
HLLDIAMGV	9	Oxidation (M)	_HLLDIAM(Oxidation (M))GV_					0	0	1		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.762778	983.511002	-0.26954	-0.00013282	-0.61091	-0.00030103	-0.88044	-0.00043385	492.7626007754674	73.011	1.1366	72.813	72.539	73.675	-0.19811	-0.079626	-0.00078009	NaN	68.485	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540040			22995	9837	15834	15869				405			0.018587116798357783
HLLDKLCK	8	Unmodified	_HLLDKLCK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2596130371094	2	485.281137	968.547722	0.29928	0.00014524	4.4216	0.0021457	4.7209	0.002291	485.2832749829542	21.195	0.29419	21.004	20.784	21.078	-0.19072					6	5	2	0	0	0	0.027866	1	616	616		94.006	11.701	1	14431			22996	4976	15835	15870	26629	26629					0.062190082963979876
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.8090209960938	2	563.810782	1125.60701	-0.26153	-0.00014746	0.40999	0.00023116	0.14846	8.3702E-05	563.8106232742291	71.513	1.8285	71.524	71.2	73.028	0.010735					90	46	4	0	0	0	0.55828	1	8603	8603		55.504	7.5886	1	4159600			22997	1303	15836	15871	26630	26630					0.04923182791549152
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.810782	1125.60701	0.15916	8.9739E-05	0.073516	4.1449E-05	0.23268	0.00013119	563.8104777872768	71.41	1.8444	71.41	71.065	72.91	0	-0.058385	0.00029428	NaN	55.504	91	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4295300			22998	1303	15836	15871							0.04923182791549152
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.810782	1125.60701	0.20407	0.00011506	-0.053295	-3.0048E-05	0.15078	8.5011E-05	563.8103967545119	71.752	2.0333	71.463	71.153	73.186	-0.28858	-0.0047357	0.00015128	NaN	55.504	87	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3925100			22999	1303	15836	15871							0.04923182791549152
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	563.810782	1125.60701	0.16111	9.0834E-05	-4.3762	-0.0024674	-4.2151	-0.0023765	564.3090038303441	71.78	1.4396	71.505	71.188	72.628	-0.2751	0.037185	-0.0047233	NaN	55.504	97	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1557200			23000	1303	15836	15871							0.04923182791549152
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.810782	1125.60701	0.23702	0.00013363	-3.7315	-0.0021039	-3.4945	-0.0019702	564.3092396104477	71.749	1.5234	71.487	70.779	72.302	-0.262	0.019198	-0.0039964	NaN	55.504	89	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1692100			23001	1303	15836	15871							0.04923182791549152
HLLEEPIYL	9	Unmodified	_HLLEEPIYL_					0	0	0		nc|ENSG00000065457|Q9BUB4-2|ADAT1;ENSG00000065457|ENST00000564657|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	nc|ENSG00000065457|Q9BUB4-2|ADAT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	563.810782	1125.60701	0.24976	0.00014082	-4.2514	-0.002397	-4.0016	-0.0022562	564.3090136395288	71.625	1.8702	71.419	70.746	72.617	-0.20613	-0.049059	-0.0045826	NaN	55.504	109	44	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839000			23002	1303	15836	15871							0.04923182791549152
HLLEKDIITL	10	Unmodified	_HLLEKDIITL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-3|CASP2;ENST00000481483.1_1_7:142988711-142991459:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8450317382812	2	597.858264	1193.70197	-0.56214	-0.00033608	-3.0322	-0.0018128	-3.5944	-0.0021489	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	1.0122	1	11653	11653		44.377	1.5129	1	5880700			23003	15509	15837	15872	26631	26631					0.11287116262769814
HLLELTDKP	9	Unmodified	_HLLELTDKP_					0	0	0			REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7744140625	2	533.300581	1064.58661	0.40444	0.00021569	0.3857	0.00020569	0.79014	0.00042138	533.3006103477686	50.978	0.37581	50.866	50.675	51.051	-0.11163					16	9	2	0	0	0	0.024447	1	5191	5191		25.574	0	1	190140	+		23004	26118	15838	15873	26632	26632					0.056900121317767116
HLLFHPST	8	Unmodified	_HLLFHPST_					0	0	0			REV__SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|63|2|anti-sense	REV__SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|63|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2266845703125	2	476.255977	950.497401	-0.36652	-0.00017456	-4.2181	-0.0020089	-4.5847	-0.0021835	476.2537078224122	26.983	1.1495	26.815	26.379	27.528	-0.16816					56	26	3	0	0	0	0.027866	1	1450	1450		62.978	0	1	1317000	+		23005	37638	15839	15874	26633	26633					0.020172219628989296
HLLFLVAGI	9	Unmodified	_HLLFLVAGI_					0	0	0		ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.2716979980469	2	491.807845	981.601138	-0.86553	-0.00042568	-2.6768	-0.0013165	-3.5424	-0.0017422	491.8062278575189	30.967	0.42165	30.726	30.453	30.875	-0.24109					12	9	2	0	0	0	0.024541	1	2035	2035		29.842	8.1392	1	65649			23006	12888	15840	15875	26634	26634					0.10960129070554103
HLLFLVAGI	9	Unmodified	_HLLFLVAGI_					0	0	0		ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.807845	981.601138	-0.96552	-0.00047485	-3.5488	-0.0017453	-4.5143	-0.0022202	491.80593518413264	30.627	0.78819	30.627	30.258	31.047	0	-0.056163	0.00019893	NaN	29.842	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467700			23007	12888	15840	15875							0.10960129070554103
HLLFLVAGI	9	Unmodified	_HLLFLVAGI_					0	0	0		ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	491.807845	981.601138	-0.46714	-0.00022974	-4.0232	-0.0019787	-4.4904	-0.0022084	491.8057157588629	30.647	0.83027	30.656	30.123	30.953	0.0086708	-0.026892	-0.0002677	NaN	29.842	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	488500			23008	12888	15840	15875							0.10960129070554103
HLLFLVAGI	9	Unmodified	_HLLFLVAGI_					0	0	0		ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	ENST00000368346.7_1_1:155452050-155490922:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.807845	981.601138	-0.89778	-0.00044153	-3.7856	-0.0018618	-4.6834	-0.0023033	491.8058231564533	30.448	0.95525	30.522	29.962	30.917	0.074314	-0.16077	-3.3999E-05	NaN	29.842	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549550			23009	12888	15840	15875							0.10960129070554103
HLLGALCDTP	10	Unmodified	_HLLGALCDTP_					0	0	0		ENST00000566685.1_1_16:23478060-23478392:-|nuORF	ENST00000566685.1_1_16:23478060-23478392:-|nuORF	ENST00000566685.1_1_16:23478060-23478392:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7536010742188	2	520.265684	1038.51682	-0.32788	-0.00017058	4.3459	0.002261	4.018	0.0020904	520.2667948216842	22.339	0.18991	22.154	22	22.189	-0.18539					5	3	2	0	0	0	0.03519	1	755	755		38.806	20.482	1	26037			23010	16946	15841	15876	26635	26635					-0.0009018980849759828
HLLGLQKLN	9	Unmodified	_HLLGLQKLN_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.78369140625	2	518.319109	1034.62366	-0.66444	-0.00034439	-0.25435	-0.00013183	-0.91879	-0.00047622	518.3187527912617	33.763	1.5824	33.819	33.105	34.688	0.056572					59	40	2	0	0	0	0.024466	1	2456	2456		25.45	1.2474	1	154370			23011	9691	15842	15877	26636	26636					0.10773728468188892
HLLGLQKLN	9	Unmodified	_HLLGLQKLN_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.319109	1034.62366	-0.45929	-0.00023806	-0.38648	-0.00020032	-0.84577	-0.00043838	518.3186627340191	33.497	1.5782	33.504	33.043	34.621	0.0066261	-0.17622	-0.00018305	NaN	18.324	69	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165000			23012	9691	15842	15877							0.10773728468188892
HLLKRYSRS	9	Unmodified	_HLLKRYSRS_					0	0	0		nc|ENSG00000244474|P22310-2|UGT1A4;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000244474|P22310-2|UGT1A4	nc|ENSG00000244474|P22310-2|UGT1A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.3380737304688	2	580.338364	1158.66217	-0.93638	-0.00054342	0.71116	0.00041271	-0.22522	-0.00013071	580.3386433163989	21.848	0.95202	21.658	21.324	22.276	-0.19072					54	19	4	0	0	0	0.39228	1	726	726		66.429	3.123	1	358380			23013	10821	15843	15878	26637	26637					0.08919034102700607
HLLKSETSV	9	Unmodified	_HLLKSETSV_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4;ENST00000490163.5_1_2:136511736-136527340:+|nuORF	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.28436279296875	2	507.284931	1012.55531	-1.1819	-0.00059955	-0.30953	-0.00015702	-1.4914	-0.00075657	507.28513139359484	30.859	1.6313	30.859	30.592	32.224	0					77	39	4	0	0	0	0.16638	1	2024	2024		95.815	38.363	1	2354700			23014	5721	15844	15879	26638	26638					0.04953439097664614
HLLKSETSV	9	Unmodified	_HLLKSETSV_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4;ENST00000490163.5_1_2:136511736-136527340:+|nuORF	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2846984863281	2	507.284931	1012.55531	-0.48195	-0.00024449	-0.0045884	-2.3276E-06	-0.48654	-0.00024681	507.2847909994556	30.826	1.5593	30.838	30.584	32.144	0.011799					71	37	3	0	0	0	0.26966	1	2000	2000		79.713	18.741	1	1956500			23015	5721	15844	15879	26639	26639					0.04953439097664614
HLLKSETSV	9	Unmodified	_HLLKSETSV_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4;ENST00000490163.5_1_2:136511736-136527340:+|nuORF	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2853698730469	2	507.284931	1012.55531	-0.49813	-0.00025269	-0.25439	-0.00012905	-0.75252	-0.00038174	507.28465405807117	30.64	1.3119	30.715	30.42	31.732	0.074314					59	31	2	0	0	0	0.19099	1	1933	1933		90.37	21.885	1	1703300			23016	5721	15844	15879	26640	26640					0.04953439097664614
HLLLAHII	8	Unmodified	_HLLLAHII_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2565002441406	2	465.300188	928.585822	0.89718	0.00041746	-0.83209	-0.00038717	0.065091	3.0287E-05	465.299853382798	59.45	0.52544	59.45	59.22	59.745	0					20	13	2	0	0	0	0.027866	1	6782	6782		54.895	21.402	1	132270			23017	9860	15845	15880	26641	26641					0.11867262273358392
HLLLPLLFWL	10	Unmodified	_HLLLPLLFWL_					0	0	0			REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	632.8626098632812	2	632.894452	1263.77435	0.62346	0.00039459	-4.4221	-0.0027987	-3.7986	-0.0024041	632.8914161386454	105.27	0.44096	105.27	105.04	105.48	0					25	11	3	0	0	0	0.03519	1	13534	13534		35.201	12.621	1	531360	+		23018	30346	15846	15881	26642	26642					0.15301495126982445
HLLLPLLFWL	10	Unmodified	_HLLLPLLFWL_					0	0	0			REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	632.894452	1263.77435	0.70054	0.00044336	-4.3465	-0.0027509	-3.646	-0.0023075	632.8913415468022	105.22	0.38109	105.22	105.02	105.4	0.00096893	-0.047774	-0.00058787	NaN	26.796	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	652130	+		23019	30346	15846	15881							0.15301495126982445
HLLLPLLFWL	10	Unmodified	_HLLLPLLFWL_					0	0	0			REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	632.894452	1263.77435	-0.074126	-4.6914E-05	-3.7038	-0.0023441	-3.778	-0.0023911	632.8917727499285	105.34	0.39741	105.34	105.12	105.52	-0.0016022	0.073687	0.0002256	NaN	26.796	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556340	+		23020	30346	15846	15881							0.15301495126982445
HLLLPLLFWL	10	Unmodified	_HLLLPLLFWL_					0	0	0			REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	632.894452	1263.77435	-0.63693	-0.00040311	-3.0884	-0.0019546	-3.7253	-0.0023577	632.8921792546754	105.34	0.39719	105.21	105	105.4	-0.12444	-0.049793	0.0010046	NaN	26.796	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	599100	+		23021	30346	15846	15881							0.15301495126982445
HLLLPLLFWL	10	Unmodified	_HLLLPLLFWL_					0	0	0			REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	REV__ENST00000321407.2_1_7:127221824-127222049:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	632.894452	1263.77435	0.23952	0.00015159	-3.9793	-0.0025185	-3.7398	-0.0023669	632.8917967373676	105.37	0.48618	105.2	105.07	105.55	-0.16484	-0.061526	-0.00012311	NaN	26.796	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1145200	+		23022	30346	15846	15881							0.15301495126982445
HLLNEMKLC	9	Unmodified	_HLLNEMKLC_					0	0	0			REV__ENST00000245441.9_2_14:51239689-51239749:-|nuORF	REV__ENST00000245441.9_2_14:51239689-51239749:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.814208984375	2	550.783187	1099.55182	-2.1033	-0.0011585	3.5221	0.0019399	1.4188	0.00078147	550.7852028368306	38.277	0.33366	38.305	38.162	38.496	0.027279					18	9	3	0	0	0	0.024436	1	3142	3142		38.806	8.3025	1	172130	+		23023	29470	15847	15882	26643	26643					0.00602729727802398
HLLNESPML	9	Oxidation (M)	_HLLNESPM(Oxidation (M))L_		HLLNESPM(1)L		HLLNESPM(140)L	0	0	1		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.2705078125	2	535.270967	1068.52738	-0.65097	-0.00034844	0.39524	0.00021156	-0.25573	-0.00013688	535.2710882736466	52.369	1.3607	52.369	51.871	53.232	0					87	35	3	0	0	0	0.028071	3	5638	5577;5625;5638		143.11	18.354	1	4498800			23024	6477	15848	15883	26644;26645;26646	26646		271			-0.004142071540854886
HLLNESPML	9	Oxidation (M)	_HLLNESPM(Oxidation (M))L_		HLLNESPM(1)L		HLLNESPM(170)L	0	0	1		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.2705078125	2	535.270967	1068.52738	-0.28918	-0.00015479	0.025025	1.3395E-05	-0.26415	-0.00014139	535.2709331041735	52.452	1.4976	52.305	51.777	53.275	-0.14723					101	39	4	0	0	0	0.014013	3	5600	5567;5600;5612		166.78	25.847	1	4485200			23025	6477	15848	15883	26647;26648;26649	26648		271			-0.004142071540854886
HLLNESPML	9	Oxidation (M)	_HLLNESPM(Oxidation (M))L_		HLLNESPM(1)L		HLLNESPM(170)L	0	0	1		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.2702026367188	2	535.270967	1068.52738	-0.81164	-0.00043445	0.44069	0.00023589	-0.37095	-0.00019856	535.2710679747975	52.367	1.3	52.459	51.788	53.088	0.091938					84	33	3	0	0	0	0.012965	6	5495	5483;5495;5507;5519;5532;5546		181.81	34.112	1	3659800			23026	6477	15848	15883	26650;26651;26652;26653;26654;26655	26651		271			-0.004142071540854886
HLLNESPML	9	Unmodified	_HLLNESPML_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.2734985351562	2	527.273509	1052.53247	-0.14827	-7.818E-05	0.30586	0.00016127	0.15759	8.3094E-05	527.2736126717457	58.586	1.5763	58.586	58.304	59.88	0					73	42	2	0	0	0	0.057894	2	6645	6645;6658		125.81	5.2553	1	3536700			23027	6477	15848	15884	26656;26657	26656					0.008300967085460798
HLLNESPML	9	Unmodified	_HLLNESPML_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2730712890625	2	527.273509	1052.53247	0.80448	0.00042418	-0.70247	-0.00037039	0.10201	5.3785E-05	527.2731041589537	58.878	1.4571	58.691	58.386	59.843	-0.18705					74	39	2	0	0	0	0.082191	1	6654	6654		116.9	17.529	1	3721300			23028	6477	15848	15884	26658	26658					0.008300967085460798
HLLNESPML	9	Unmodified	_HLLNESPML_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.2730712890625	2	527.273509	1052.53247	0.54691	0.00028837	-0.38753	-0.00020433	0.15938	8.4038E-05	527.2732608139892	58.526	1.6154	58.617	58.297	59.912	0.091217					77	43	2	0	0	0	0.082191	1	6556	6556		116.9	5.2553	1	3518600			23029	6477	15848	15884	26659	26659					0.008300967085460798
HLLNESPML	9	Unmodified	_HLLNESPML_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.273509	1052.53247	-0.48684	-0.0002567	1.3294	0.00070096	0.84256	0.00044426	527.2739956780424	58.831	0.58856	58.643	58.39	58.979	-0.18795	0.0083827	0.0014962	NaN	125.81	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	942540			23030	6477	15848	15884							0.008300967085460798
HLLNESPML	9	Unmodified	_HLLNESPML_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.273509	1052.53247	0.01529	8.0622E-06	0.36071	0.00019019	0.376	0.00019825	527.2735372140245	58.79	0.60447	58.608	58.347	58.952	-0.18134	-0.026503	0.00047464	NaN	125.81	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002300			23031	6477	15848	15884							0.008300967085460798
HLLNESPML	9	Unmodified	_HLLNESPML_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.273509	1052.53247	0.64442	0.00033978	-0.12869	-6.7855E-05	0.51573	0.00027193	527.2732270748629	58.905	0.6352	58.663	58.381	59.017	-0.24165	0.028518	-4.1449E-05	NaN	125.81	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827640			23032	6477	15848	15884							0.008300967085460798
HLLPILYLN	9	Unmodified	_HLLPILYLN_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.311279296875	2	548.331685	1094.64882	-0.94184	-0.00051644	2.3453	0.001286	1.4034	0.00076955	548.3331382846941	56.277	0.39849	56.121	55.922	56.321	-0.15601					12	10	2	0	0	0	0.024418	1	6235	6235		46.766	17.617	1	185230			23033	6186	15849	15885	26660	26660					0.10527783270754298
HLLPQVVEL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))HLLPQVVEL_					1	0	0		ENST00000484589.1_1_7:40027550-40027583:+|nuORF	ENST00000484589.1_1_7:40027550-40027583:+|nuORF	ENST00000484589.1_1_7:40027550-40027583:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.31689453125	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.77768	1	11366	11366		40.778	7.2626	1	11705000			23034	15304	15850	15886	26661	26661					0.08222889028479585
HLLQRLWV	8	Unmodified	_HLLQRLWV_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2754516601562	2	532.821818	1063.62908	-1.6432	-0.00087552	-0.34816	-0.00018551	-1.9913	-0.001061	532.8214037321814	49.401	0.41396	49.475	49.279	49.693	0.074196					16	10	2	0	0	0	0.027866	1	5064	5064		29.842	6.3188	1	107710			23035	1476;13528	15851	15887	26662	26662					0.09981452050624284
HLLQRLWV	8	Unmodified	_HLLQRLWV_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.248291015625	2	532.821818	1063.62908	-0.43592	-0.00023227	-0.73484	-0.00039154	-1.1708	-0.00062381	532.821350467537	49.746	0.56981	49.466	49.123	49.693	-0.27977					34	14	3	0	0	0	0.027866	1	4963	4963		39.021	3.4032	1	698160			23036	1476;13528	15851	15887	26663	26663					0.09981452050624284
HLLRALSDDG	10	Unmodified	_HLLRALSDDG_					0	0	0		nc|ENSG00000105928|O60443-2|GSDME;nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	nc|ENSG00000105928|O60443-2|GSDME	nc|ENSG00000105928|O60443-2|GSDME	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.8030395507812	2	548.790912	1095.56727	-0.56792	-0.00031167	-4.1289	-0.0022659	-4.6968	-0.0025776	548.7891860099162	31	0.28968	30.758	30.585	30.875	-0.24109					9	6	2	0	0	0	0.03519	1	2005	2005		32.812	0	1	33424			23037	2735	15852	15888	26664	26664					0.023310558408411453
HLLRSTQL	8	Unmodified	_HLLRSTQL_					0	0	0			REV__ENSG00000134852|ENST00000513440|CLOCK	REV__ENSG00000134852|ENST00000513440|CLOCK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.2878112792969	2	484.287808	966.561064	1.2067	0.0005844	-1.1083	-0.00053672	0.098444	4.7675E-05	484.28714588414175	17.887	0.54786	17.733	17.408	17.955	-0.15403					19	10	3	0	0	0	0.96769	1	242	242		42.396	3.59	1	108110	+		23038	23488	15853	15889	26665	26665					0.07644582400007494
HLLSSLQLL	9	Unmodified	_HLLSSLQLL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000534210.6_1_11:6559916-6579528:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7337646484375	2	512.313492	1022.61243	-0.037831	-1.9382E-05	0.10683	5.4729E-05	0.068995	3.5347E-05	512.3133745791617	59.16	0.95829	58.972	58.74	59.699	-0.18795					46	23	3	0	0	0	0.024477	1	6535	6535		35.618	0	1	503240			23039	8901	15854	15890	26666	26666					0.10202906374058784
HLLTLGILY	9	Unmodified	_HLLTLGILY_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2374267578125	2	521.81841	1041.62227	-0.37622	-0.00019632	-4.1044	-0.0021418	-4.4806	-0.0023381	522.3183204889887	63.909	0.15475	63.681	63.585	63.74	-0.22773					5	3	2	0	0	0	0.024535	1	7229	7229		33.516	3.674	1	31179	+		23040	24336	15855	15891	26667	26667					0.10312094379423797
HLLVEHET	8	Unmodified	_HLLVEHET_					0	0	0		ENSG00000072786|ENST00000176763|STK10;ENST00000517360.1_1_5:171471888-171480055:-|nuORF;nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	ENSG00000072786|ENST00000176763|STK10;nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2686767578125	2	489.256174	976.497795	-0.96723	-0.00047322	-1.1298	-0.00055277	-2.097	-0.001026	489.2565214609086	43.861	0.52974	43.861	43.621	44.151	0					40	14	3	0	0	0	0.027866	1	4106	4106		25.45	1.2474	1	825720			23041	1313;1488	15856	15892	26668	26668					0.00860596892096055
HLLVGRINV	9	Unmodified	_HLLVGRINV_					0	0	0			REV__SLC30A10|p.L236V|1|0.23|ENSG00000196660|chr1:219927040-219927040|G/C|missense_variant	REV__SLC30A10|p.L236V|1|0.23|ENSG00000196660|chr1:219927040-219927040|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.80865478515625	2	510.819276	1019.624	-0.51537	-0.00026326	-1.8688	-0.00095463	-2.3842	-0.0012179	510.8178808965167	22.063	0.57257	21.872	21.564	22.137	-0.19072					24	11	3	0	0	0	0.024487	1	750	750		24.203	9.5387	1	108010	+		23042	37503	15857	15893	26669	26669					0.11497148188038864
HLLVQVTATL	10	Unmodified	_HLLVQVTATL_					0	0	0		nc|ENSG00000118690|Q8NEN0-2|ARMC2;ENSG00000118690|ENST00000392644|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2868041992188	2	547.832049	1093.64954	-0.022657	-1.2412E-05	-0.77676	-0.00042553	-0.79941	-0.00043794	547.8315455501505	47.895	0.48287	47.708	47.457	47.94	-0.18684					25	12	3	0	0	0	0.03519	1	4705	4705		47.657	8.8512	1	246400			23043	3698	15858	15894	26670	26670					0.10646577919806077
HLLVTAQSF	9	Unmodified	_HLLVTAQSF_					0	0	0		ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	ENST00000392973.7_1_16:90075326-90076003:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.7835693359375	2	508.282192	1014.54983	-0.44192	-0.00022462	-0.64849	-0.00032962	-1.0904	-0.00055423	508.2820767122176	23.441	2.5705	23.261	22.375	24.945	-0.17989					117	58	3	0	0	0	0.35646	1	983	983		68.787	0	1	56565000			23044	13435	15859	15895	26671	26671					0.04313760305853975
HLMLAEGY	8	Unmodified	_HLMLAEGY_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2734680175781	2	467.228571	932.442588	0.62797	0.00029341	0.80731	0.0003772	1.4353	0.0006706	467.22843850075907	67.469	0.24992	67.214	67.073	67.323	-0.25516					10	5	2	0	0	0	0.027866	1	7745	7745		13.775	0	1	52838			23045	8931	15860	15896	26672	26672					-0.02633532900017599
HLNEPLVEV	9	Unmodified	_HLNEPLVEV_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.81005859375	2	525.284931	1048.55531	-1.0554	-0.00055438	2.848	0.001496	1.7926	0.00094164	525.2861516067569	55.789	0.66048	55.632	55.312	55.972	-0.15656					24	17	2	0	0	0	0.024495	1	6025	6025		42.396	20.436	1	194240	+		23046	25846	15861	15897	26673	26673					0.032974390976505674
HLNEPLVEV	9	Unmodified	_HLNEPLVEV_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.284931	1048.55531	-0.80874	-0.00042482	0.25468	0.00013378	-0.55406	-0.00029104	525.2840848043563	55.561	0.2209	55.659	55.561	55.782	0.098011	0.013324	-0.0017794	NaN	42.396	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139300	+		23047	25846	15861	15897							0.032974390976505674
HLNGKNSSL	9	Unmodified	_HLNGKNSSL_					0	0	0		ENST00000553338.1_1_14:76452564-76488738:+|nuORF;ENST00000555677.5_1_14:76368510-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43;ENSG00000119650|ENST00000314067|IFT43	ENST00000553338.1_1_14:76452564-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43	ENST00000553338.1_1_14:76452564-76488738:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.2591552734375	2	485.259248	968.503943	0.26076	0.00012654	-0.91915	-0.00044603	-0.65839	-0.00031949	485.25879884590626	21.067	1.297	20.89	20.484	21.781	-0.17721					84	26	5	0	0	0	0.19099	4	622	612;622;634;647		90.37	19.074	1	3094000			23048	16636;3750	15862	15898	26674;26675;26676;26677	26675					0.018431151236200094
HLNGKNSSL	9	Unmodified	_HLNGKNSSL_					0	0	0		ENST00000553338.1_1_14:76452564-76488738:+|nuORF;ENST00000555677.5_1_14:76368510-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43;ENSG00000119650|ENST00000314067|IFT43	ENST00000553338.1_1_14:76452564-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43	ENST00000553338.1_1_14:76452564-76488738:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2591857910156	2	485.259248	968.503943	0.27426	0.00013309	-0.87666	-0.00042541	-0.6024	-0.00029232	485.25883018080987	21.179	2.1425	20.989	20.637	22.779	-0.19072					97	44	4	0	0	0	0.043667	2	627	627;639		131.03	43.277	1	2836300			23049	16636;3750	15862	15898	26678;26679	26678					0.018431151236200094
HLNGKNSSL	9	Unmodified	_HLNGKNSSL_					0	0	0		ENST00000553338.1_1_14:76452564-76488738:+|nuORF;ENST00000555677.5_1_14:76368510-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43;ENSG00000119650|ENST00000314067|IFT43	ENST00000553338.1_1_14:76452564-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43	ENST00000553338.1_1_14:76452564-76488738:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.259248	968.503943	-0.91626	-0.00044462	0.88687	0.00043036	-0.029386	-1.426E-05	485.2595382178995	21.157	0.73508	20.944	20.723	21.458	-0.2128	0.0029834	0.001565	NaN	131.03	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193210			23050	16636;3750	15862	15898							0.018431151236200094
HLNLKKLGV	9	Unmodified	_HLNLKKLGV_					0	0	0			REV__ENSG00000111424|ENST00000549336|VDR	REV__ENSG00000111424|ENST00000549336|VDR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.3261413574219	2	511.329476	1020.6444	-1.0623	-0.00054317	-3.3867	-0.0017317	-4.4489	-0.0022749	511.32756312353075	106	0.52655	105.86	105.43	105.96	-0.1328					34	21	2	0	0	0	1.0148	1	13184	13184		17.365	0	1	76355	+		23051	21918	15863	15899	26680	26680					0.13490318847846083
HLNTNHSF	8	Unmodified	_HLNTNHSF_					0	0	0			REV__nc|ENSG00000186376|P51815-2|ZNF75D	REV__nc|ENSG00000186376|P51815-2|ZNF75D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2596130371094	2	485.230491	968.446428	0.31843	0.00015451	2.4201	0.0011743	2.7385	0.0013288	485.23182237652316	21.146	0.24483	20.955	20.833	21.078	-0.19072					9	4	3	0	0	0	0.027866	1	616	616		71.378	8.3995	1	14274	+		23052	27850	15864	15900	26681	26681					-0.03905727081951227
HLPALLSALQ	10	Unmodified	_HLPALLSALQ_					0	0	0		ENSG00000215912|ENST00000401095|TTC34	ENSG00000215912|ENST00000401095|TTC34	ENSG00000215912|ENST00000401095|TTC34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.798095703125	2	531.818941	1061.62333	-0.95891	-0.00050997	-2.9807	-0.0015852	-3.9396	-0.0020952	531.8171742733708	91.171	0.66804	91.047	90.874	91.542	-0.12341					19	15	2	0	0	0	0.03519	1	11161	11161		32.812	20.606	1	62108			23053	10596	15865	15901	26682	26682					0.09498308748334239
HLPDFVKQL	9	Unmodified	_HLPDFVKQL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.8118896484375	2	548.811116	1095.60768	-0.21611	-0.0001186	0.28653	0.00015725	0.070423	3.8649E-05	548.8110996804533	58.4	1.6532	58.222	57.826	59.48	-0.17775					82	40	3	0	0	0	0.12914	1	6397	6397		104.06	32.761	1	1959300			23054	4940	15866	15902	26683	26683					0.0637002223129457
HLPDFVKQL	9	Unmodified	_HLPDFVKQL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3107299804688	2	548.811116	1095.60768	-0.057186	-3.1384E-05	0.58895	0.00032322	0.53177	0.00029184	548.8111560287522	58.246	1.9432	58.056	57.443	59.386	-0.19018					102	48	3	0	0	0	0.12602	1	6393	6393		104.75	38.317	1	1431200			23055	4940	15866	15902	26684	26684					0.0637002223129457
HLPDFVKQL	9	Unmodified	_HLPDFVKQL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.811116	1095.60768	-0.13677	-7.5061E-05	1.2865	0.00070607	1.1498	0.00063101	549.3132809007446	58.101	1.4239	58.101	57.796	59.22	0	-0.026244	0.0010558	NaN	104.75	84	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2073600			23056	4940	15866	15902							0.0637002223129457
HLPDFVKQL	9	Unmodified	_HLPDFVKQL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.811116	1095.60768	0.28229	0.00015493	-0.14117	-7.7477E-05	0.14112	7.7449E-05	548.8109228166298	58.372	1.6922	58.131	57.732	59.424	-0.24166	0.0029999	-0.00051125	NaN	104.75	108	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1874200			23057	4940	15866	15902							0.0637002223129457
HLPFALLTL	9	Unmodified	_HLPFALLTL_					0	0	0			REV__ENST00000379441.7_1_12:57011253-57030013:-|nuORF	REV__ENST00000379441.7_1_12:57011253-57030013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7688598632812	2	512.813128	1023.6117	-1.2862	-0.00065958	-2.9288	-0.0015019	-4.215	-0.0021615	512.8115325948671	55.367	0.88196	55.465	55.22	56.102	0.098015					42	23	3	0	0	0	0.024412	1	6084	6084		40.573	17.05	1	1333100	+		23058	31433	15867	15903	26685	26685					0.10084111724984268
HLPGPLAAPL	10	Unmodified	_HLPGPLAAPL_					0	0	0			REV__ENST00000301015.13_2_16:88804637-88805031:-|nuORF	REV__ENST00000301015.13_2_16:88804637-88805031:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.80718994140625	2	493.295102	984.575651	-0.67175	-0.00033137	0.60733	0.0002996	-0.064415	-3.1776E-05	493.2951642289322	51.976	0.62793	51.857	51.575	52.203	-0.11876					29	16	3	0	0	0	0.03519	1	5359	5359		35.201	0	1	843080	+		23059	30051	15868	15904	26686	26686					0.08274654548142735
HLPGPLAAPL	10	Unmodified	_HLPGPLAAPL_					0	0	0			REV__ENST00000301015.13_2_16:88804637-88805031:-|nuORF	REV__ENST00000301015.13_2_16:88804637-88805031:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.807861328125	2	493.295102	984.575651	-1.8149	-0.00089526	1.9919	0.00098259	0.17704	8.7335E-05	493.2957872180705	52.174	0.54757	51.905	51.691	52.238	-0.26904					27	14	3	0	0	0	0.03519	1	5418	5418		35.201	0	1	795320	+		23060	30051	15868	15904	26687	26687					0.08274654548142735
HLPGQLNP	8	Unmodified	_HLPGQLNP_					0	0	0			REV__ENSG00000184863|ENST00000401878|RBM33	REV__ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.1484680175781	2	438.240327	874.466101	-0.10492	-4.5981E-05	0.46097	0.00020202	0.35605	0.00015604	438.24043847067605	42.882	0.6872	42.656	42.41	43.097	-0.22597					34	17	3	0	0	0	0.027866	1	3930	3930		62.978	41.019	1	259090	+		23061	27706	15869	15905	26688	26688					0.02384648928796196
HLPIFFLFFL	10	Unmodified	_HLPIFFLFFL_					0	0	0		ENST00000574951.5_1_17:4883690-4883894:-|nuORF	ENST00000574951.5_1_17:4883690-4883894:-|nuORF	ENST00000574951.5_1_17:4883690-4883894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	647.398193359375	2	647.373352	1292.73215	0.6722	0.00043516	-0.28632	-0.00018536	0.38588	0.00024981	647.3729253837745	52.692	0.27848	52.692	52.472	52.75	0					9	6	2	0	0	0	0.03519	1	5657	5657		19.36	0	1	60086			23062	17091	15870	15906	26689	26689					0.09749519718593547
HLPLETILGI	10	Unmodified	_HLPLETILGI_					0	0	0			REV__ENSG00000170881|ENST00000303545|RNF139	REV__ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.33203125	2	553.334424	1104.6543	-0.076569	-4.2368E-05	-3.3934	-0.0018777	-3.4699	-0.00192	553.3323919260035	95.322	1.2671	95.325	94.957	96.224	0.0033798					89	29	4	0	0	0	1.1056	1	12083	12083		31.955	2.8053	1	4391700	+		23063	26516	15871	15907	26690	26690					0.10615462062582992
HLPLIKMKP	9	Unmodified	_HLPLIKMKP_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8382568359375	2	538.83608	1075.65761	3.0944	0.0016674	0.31585	0.00017019	3.4103	0.0018376	538.8361287498561	18.596	0.49071	18.659	18.452	18.942	0.063307					15	9	2	0	0	0	1.0051	1	277	277		19.36	1.0356	1	92356			23064	8170	15872	15908	26691	26691					0.12280433635601185
HLPPLPAATQ	10	Unmodified	_HLPPLPAATQ_					0	0	0		ENST00000589691.1_1_17:76126869-76128563:+|nuORF	ENST00000589691.1_1_17:76126869-76128563:+|nuORF	ENST00000589691.1_1_17:76126869-76128563:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7968139648438	2	522.795466	1043.57638	-1.0955	-0.00057271	3.845	0.0020101	2.7495	0.0014374	522.7973178051591	38.956	2.4556	38.792	37.754	40.209	-0.16458					157	67	3	0	0	0	0.98754	1	3295	3295		47.657	7.0847	1	2272300			23065	17313	15873	15909	26692	26692					0.05633449197171103
HLPPRRPAEG	10	Unmodified	_HLPPRRPAEG_					0	0	0			REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.3165283203125	2	565.314889	1128.61522	4.655	0.0026315	-1.3991	-0.00079094	3.2559	0.0018406	565.3139487711583	17.449	0.23226	17.51	17.379	17.612	0.06036					11	7	2	0	0	0	1.0994	1	136	136		10.265	0	1	16087	+		23066	31526	15874	15910	26693	26693					0.05606174551530785
HLPPRRPAEG	10	Unmodified	_HLPPRRPAEG_					0	0	0			REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	565.314889	1128.61522	4.655	0.0026315	-1.3991	-0.00079094	3.2559	0.0018406	565.3139487711583	17.449	0.23226	17.51	17.379	17.612	0.06036	0.075197	-0.0016552	NaN	10.265	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16087	+		23067	31526	15874	15910							0.05606174551530785
HLPSCIALY	9	Unmodified	_HLPSCIALY_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2778015136719	2	508.76532	1015.51609	-0.42165	-0.00021452	-0.23522	-0.00011967	-0.65687	-0.0003342	508.76534927017576	46.2	0.75763	45.938	45.666	46.423	-0.26118					26	19	2	0	0	0	0.024258	1	4423	4423		44.531	0	1	1485900	+		23068	28138	15875	15911	26694	26694					0.008950155424372497
HLPSHITHG	9	Unmodified	_HLPSHITHG_					0	0	0		ENST00000474199.5_1_19:48800235-48800805:-|nuORF;ENST00000497273.1_1_19:48800235-48801266:-|nuORF;nc|ENSG00000105479|Q96M63-4|ODAD1;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3186950683594	2	499.761958	997.509363	-0.42784	-0.00021382	-0.95285	-0.0004762	-1.3807	-0.00069002	499.76139484347647	42.525	0.48814	42.293	42.117	42.605	-0.23186					20	12	2	0	0	0	0.024487	1	3835	3835		24.203	15.971	1	307400			23069	2681	15876	15912	26695	26695					0.010508387060895075
HLPSHITHG	9	Unmodified	_HLPSHITHG_					0	0	0		ENST00000474199.5_1_19:48800235-48800805:-|nuORF;ENST00000497273.1_1_19:48800235-48801266:-|nuORF;nc|ENSG00000105479|Q96M63-4|ODAD1;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.761958	997.509363	-0.68172	-0.0003407	-0.98936	-0.00049444	-1.6711	-0.00083514	499.7612951373931	42.581	0.5692	42.355	42.105	42.675	-0.22597	0.049574	0.00025698	NaN	24.203	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377890			23070	2681	15876	15912							0.010508387060895075
HLPTSGIKD	9	Unmodified	_HLPTSGIKD_					0	0	0			REV__ENST00000443120.5_1_2:97505679-97506290:-|nuORF	REV__ENST00000443120.5_1_2:97505679-97506290:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2868957519531	2	484.263999	966.513445	0.071663	3.4704E-05	-0.41919	-0.000203	-0.34753	-0.0001683	484.26375440341576	57.192	0.79976	57.028	56.745	57.545	-0.16431					56	21	3	0	0	0	0.024457	1	6389	6389		37.159	15.199	1	3279300	+		23071	25539	15877	15913	26696	26696					0.02884883409149097
HLQDKKSA	8	Unmodified	_HLQDKKSA_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.7569274902344	2	463.756341	925.498129	0.60558	0.00028084	-0.4648	-0.00021555	0.14077	6.5285E-05	463.7559924965649	20.802	0.78775	20.607	20.187	20.975	-0.19577					28	15	3	0	0	0	0.71833	1	581	581		65.803	0	1	340300			23072	6133	15878	15914	26697	26697					0.03240016611948704
HLQDKKSA	8	Unmodified	_HLQDKKSA_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	463.756341	925.498129	0.17615	8.169E-05	0.05485	2.5437E-05	0.231	0.00010713	463.75620329119914	20.701	0.77844	20.534	20.296	21.074	-0.16774	-0.042607	0.00018877	NaN	65.803	30	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319080			23073	6133	15878	15914							0.03240016611948704
HLQDKKSA	8	Unmodified	_HLQDKKSA_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.756341	925.498129	-0.63846	-0.00029609	1.1662	0.00054081	0.52771	0.00024473	463.7569850199463	20.812	0.34717	20.588	20.415	20.762	-0.22344	0.012145	0.0012195	NaN	65.803	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31050			23074	6133	15878	15914							0.03240016611948704
HLQDPNHLTL	10	Unmodified	_HLQDPNHLTL_					0	0	0		ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	594.310546875	2	594.312012	1186.60947	-1.7121	-0.0010175	-0.54776	-0.00032554	-2.2598	-0.001343	594.3115556139444	61.7	0.70609	61.7	61.374	62.08	0					59	18	4	0	0	0	0.59716	1	7155	7155		77.318	13.11	1	3668100			23075	9777	15879	15915	26698	26698					0.023630312492286976
HLQDPNHLTL	10	Unmodified	_HLQDPNHLTL_					0	0	0		ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	594.3106689453125	2	594.312012	1186.60947	-0.73217	-0.00043514	-1.5772	-0.00093736	-2.3094	-0.0013725	594.310911258473	61.929	0.74409	61.702	61.375	62.119	-0.22663					66	19	5	0	0	0	0.59716	2	7159	7148;7159		77.318	0.82846	1	3380500			23076	9777	15879	15915	26699;26700	26700					0.023630312492286976
HLQDPNHLTL	10	Unmodified	_HLQDPNHLTL_					0	0	0		ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	594.312012	1186.60947	-1.525	-0.0009063	-1.7301	-0.0010282	-3.255	-0.0019345	594.3107501640961	61.914	0.50919	61.737	61.453	61.963	-0.17781	0.03204	-0.00031768	NaN	77.318	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150490			23077	9777	15879	15915							0.023630312492286976
HLQIVRKEH	9	Unmodified	_HLQIVRKEH_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.3381958007812	2	580.338364	1158.66217	0.29724	0.0001725	-0.55618	-0.00032277	-0.25894	-0.00015027	580.3379811286054	21.653	0.90467	21.476	21.162	22.066	-0.17721					50	18	4	0	0	0	0.42604	1	709	709		64.207	0	1	474690	+		23078	25846	15880	15916	26701	26701					0.08919034102700607
HLQLRVLSV	9	Unmodified	_HLQLRVLSV_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|83|2|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|83|2|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|83|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2754516601562	2	532.832383	1063.65021	-1.2084	-0.0006439	1.0333	0.00055059	-0.17511	-9.3305E-05	532.832551843971	49.661	0.19012	49.735	49.578	49.768	0.074196					6	4	2	0	0	0	0.024457	1	5064	5064		21.96	0	1	75004			23079	17850	15881	15917	26702	26702					0.1209341735950602
HLRALHSQ	8	Unmodified	_HLRALHSQ_					0	0	0			REV__ENST00000447399.6_1_11:9685629-9715703:+|nuORF	REV__ENST00000447399.6_1_11:9685629-9715703:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.2695007324219	2	481.26995	960.525347	1.7154	0.00082556	-2.0298	-0.0009769	-0.31447	-0.00015135	481.2690356878286	19.451	0.49559	19.218	19.027	19.523	-0.23345					15	9	2	0	0	0	0.94517	1	402	402		45.952	0	1	90579	+		23080	32645	15882	15918	26703	26703					0.043505449429858345
HLRLIQVV	8	Unmodified	_HLRLIQVV_					0	0	0			REV__ENSG00000182512|ENST00000331334|GLRX5	REV__ENSG00000182512|ENST00000331334|GLRX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.3140563964844	2	489.316369	976.618185	-1.0508	-0.00051419	-4.0751	-0.001994	-5.126	-0.0025082	489.3142275858638	94.356	1.1901	94.218	93.834	95.024	-0.13779					78	27	5	0	0	0	1.0574	1	11619	11619		21.702	1.2205	1	1637300	+		23081	27484	15883	15919	26704	26704					0.12894049676390296
HLRPQGHLL	9	Unmodified	_HLRPQGHLL_					0	0	0		ENST00000584581.5_1_18:72178181-72179738:+|nuORF	ENST00000584581.5_1_18:72178181-72179738:+|nuORF	ENST00000584581.5_1_18:72178181-72179738:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.8118896484375	2	535.814525	1069.6145	-0.49681	-0.0002662	-3.4029	-0.0018233	-3.8997	-0.0020895	535.812623454194	19.195	0.83573	19.077	18.756	19.591	-0.11872					32	16	4	0	0	0	0.92825	1	383	383		30.504	3.7075	1	215320			23082	17208	15884	15920	26705	26705					0.08247379902513785
HLRPYCFW	8	Unmodified	_HLRPYCFW_					0	0	0		ENST00000314845.7_1_11:46568681-46568783:-|nuORF	ENST00000314845.7_1_11:46568681-46568783:-|nuORF	ENST00000314845.7_1_11:46568681-46568783:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.0005493164062	2	561.271104	1120.52766	-0.020373	-1.1435E-05	-0.98829	-0.0005547	-1.0087	-0.00056614	561.2701401615548	20.439	0.63799	20.271	20.098	20.736	-0.16774					18	12	2	0	0	0	0.027866	1	572	572		20.482	0	1	42951			23083	12124	15885	15921	26706	26706					-0.027787426435679663
HLRQSLVY	8	Unmodified	_HLRQSLVY_					0	0	0		ENST00000176763.9_1_5:171470934-171471408:-|nuORF	ENST00000176763.9_1_5:171470934-171471408:-|nuORF	ENST00000176763.9_1_5:171470934-171471408:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2877502441406	2	508.287808	1014.56106	-0.19113	-9.7147E-05	0.049452	2.5136E-05	-0.14167	-7.2011E-05	508.28766562557246	52.615	1.1719	52.488	52.157	53.329	-0.12705					47	29	2	0	0	0	0.93274	1	5486	5486		47.916	1.9434	1	2367300			23084	11119	15886	15922	26707	26707					0.05436582400000134
HLRRFNLRRSA	11	Unmodified	_HLRRFNLRRSA_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.2540283203125	3	475.948121	1424.82253	-0.048209	-2.2945E-05	-0.7944	-0.00037809	-0.84261	-0.00040104	475.9475499390934	26.348	0.58957	26.429	26.21	26.799	0.081291					25	13	3	0	0	0	0.024809	1	1326	1326		17.167	4.7339	1	117970			23085	6841	15887	15923	26708	26708					0.12711381819576673
HLRRFNLRRSA	11	Unmodified	_HLRRFNLRRSA_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	475.948121	1424.82253	0.72671	0.00034588	-1.9052	-0.00090677	-1.1785	-0.00056089	475.9470782420642	26.485	0.6615	26.485	26.163	26.825	0	0.027745	-0.00024396	NaN	17.167	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151300			23086	6841	15887	15923							0.12711381819576673
HLRRRNVQFLF	11	Unmodified	_HLRRRNVQFLF_					0	0	0		nc|ENSG00000179846|Q17RQ9|NKPD1;ENSG00000179846|ENST00000686631|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.9586181640625	3	495.956505	1484.84768	0.30887	0.00015319	4.2609	0.0021132	4.5697	0.0022664	495.9586267866749	102.2	1.5211	102.2	101.58	103.1	-0.0054398					89	35	3	0	0	0	1.1045	1	13052	13052		10.104	0.8921	1	815360			23087	8929	15888	15924	26709	26709					0.12465436622164816
HLRYIGSV	8	Unmodified	_HLRYIGSV_					0	0	0			REV__nc|ENSG00000186431|P24071-8|FCAR	REV__nc|ENSG00000186431|P24071-8|FCAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.245849609375	2	472.769252	943.52395	0.24434	0.00011552	3.5186	0.0016635	3.7629	0.001779	472.7708247321732	22.584	0.70037	22.584	21.965	22.665	0					26	14	2	0	0	0	0.027866	1	759	759		42.474	8.3019	1	56924	+		23088	37027	15889	15925	26710	26710					0.04992910854230104
HLRYLISP	8	Unmodified	_HLRYLISP_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3186950683594	2	499.792727	997.5709	-0.38302	-0.00019143	-2.8936	-0.0014462	-3.2766	-0.0016376	499.7906474323667	42.757	0.72446	42.523	42.232	42.957	-0.23373					28	18	2	0	0	0	0.027866	1	3835	3835		23.042	3.6825	1	1271100	+		23089	21142	15890	15926	26711	26711					0.07201770405367824
HLSAKERR	8	Unmodified	_HLSAKERR_					0	0	0		nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-5|NEMF	nc|ENSG00000165525|O60524-3|NEMF	nc|ENSG00000165525|O60524-3|NEMF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7384033203125	2	498.788507	995.562461	-1.5385	-0.00076739	-1.4078	-0.00070222	-2.9464	-0.0014696	498.7874203870524	33.902	0.50381	33.727	33.469	33.972	-0.17557					31	12	3	0	0	0	0.027866	1	2441	2441		42.474	17.024	1	413000			23090	7426	15891	15927	26712	26712					0.06450216488758542
HLSELVQQI	9	Unmodified	_HLSELVQQI_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7984008789062	2	533.798206	1065.58186	-0.75986	-0.00040561	2.9948	0.0015986	2.2349	0.001193	533.79959014716	57.125	0.66448	57.221	56.911	57.575	0.095306					54	17	4	0	0	0	0.42604	1	6374	6374		64.207	2.0999	1	2827500			23091	2354	15892	15928	26713	26713					0.051691279890064834
HLSGHTRTE	9	Unmodified	_HLSGHTRTE_					0	0	0			REV__ENST00000534864.5_1_11:94890896-94938024:+|nuORF	REV__ENST00000534864.5_1_11:94890896-94938024:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.786865234375	2	519.259779	1036.50501	2.0041	0.0010407	-2.3787	-0.0012351	-0.37452	-0.00019447	519.2584636650782	24.75	0.52619	24.569	24.241	24.767	-0.18089					16	11	2	0	0	0	0.024427	1	1085	1085		26.693	1.2427	1	125510	+		23092	34657	15893	15929	26714	26714					-0.011786705074655401
HLSIVWCK	8	Unmodified	_HLSIVWCK_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.269287109375	2	493.26803	984.521507	-0.97351	-0.0004802	3.1997	0.0015783	2.2262	0.0010981	493.2694763134611	25.637	0.70432	25.41	25.148	25.852	-0.22683					48	16	4	0	0	0	0.87148	1	1250	1250		53.351	0.41475	1	1223800			23093	9957	15894	15930	26715	26715					0.028627391249187895
HLSLALFQS	9	Unmodified	_HLSLALFQS_					0	0	0		ENSG00000065357|ENST00000331886|DGKA;ENST00000552478.5_1_12:56330769-56331850:+|nuORF;nc|ENSG00000065357|P23743-2|DGKA;ENST00000547535.5_1_12:56325880-56331830:+|nuORF;ENST00000551615.5_1_12:56325880-56331850:+|nuORF;nc|ENSG00000065357|P23743-3|DGKA;ENST00000551296.5_1_12:56330769-56334129:+|nuORF;ENST00000549097.5_1_12:56325880-56333318:+|nuORF;ENST00000547358.5_1_12:56325089-56334578:+|nuORF	ENSG00000065357|ENST00000331886|DGKA	ENSG00000065357|ENST00000331886|DGKA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2819519042969	2	508.282192	1014.54983	0.23505	0.00011947	-1.4608	-0.00074252	-1.2258	-0.00062305	508.28165166513844	23.461	3.0777	23.259	22.178	25.256	-0.20193					186	69	6	0	0	0	0.39228	1	910	910		66.429	8.618	1	45121000			23094	1300	15895	15931	26716	26716					0.04313760305865344
HLSLRGISLP	10	Unmodified	_HLSLRGISLP_					0	0	0		ENST00000519382.1_1_X:13734634-13734679:-|nuORF	ENST00000519382.1_1_X:13734634-13734679:-|nuORF	ENST00000519382.1_1_X:13734634-13734679:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7896118164062	2	546.82984	1091.64513	-0.50465	-0.00027596	0.43512	0.00023794	-0.069533	-3.8022E-05	546.8299387650477	30.775	0.74702	30.622	30.298	31.045	-0.15231					36	17	3	0	0	0	0.03519	1	1995	1995		90.37	35.594	1	285560			23095	15951	15896	15932	26717	26717					0.10297113496903876
HLSLRLASP	9	Unmodified	_HLSLRLASP_					0	0	0			REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.28515625	2	497.295633	992.576714	-0.79453	-0.00039512	0.55216	0.00027459	-0.24237	-0.00012053	497.2955676188583	34.502	0.4427	34.326	34.128	34.571	-0.17557					14	10	2	0	0	0	0.024374	1	2542	2542		49.442	14.241	1	77647	+		23096	34711	15897	15933	26718	26718					0.08012868917035121
HLSNTVRSQ	9	Unmodified	_HLSNTVRSQ_					0	0	0		PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-4|PSEN1;PSEN1|p.R42Hfs*33|1|0.1|ENSG00000080815|chr14:73170831-73170832|-/AC|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7009887695312	2	521.275429	1040.53631	-0.16081	-8.3825E-05	3.5801	0.0018662	3.4193	0.0017824	521.2769166705316	32.463	0.9426	32.305	31.904	32.847	-0.15772					15	8	3	0	0	0	0.024495	1	2298	2298		34.173	5.023	1	161060			23097	19002;1695	15898	15934	26719	26719					0.0176590252663118
HLSNTVRSQ	9	Unmodified	_HLSNTVRSQ_					0	0	0		PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-4|PSEN1;PSEN1|p.R42Hfs*33|1|0.1|ENSG00000080815|chr14:73170831-73170832|-/AC|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.275429	1040.53631	-0.31415	-0.00016376	3.3369	0.0017395	3.0228	0.0015757	521.2773076983717	32.549	0.82403	32.313	32.086	32.91	-0.23666	-0.03367	0.00044319	NaN	42.396	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121490			23098	19002;1695	15898	15934							0.0176590252663118
HLSNTVRSQ	9	Unmodified	_HLSNTVRSQ_					0	0	0		PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-4|PSEN1;PSEN1|p.R42Hfs*33|1|0.1|ENSG00000080815|chr14:73170831-73170832|-/AC|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.275429	1040.53631	0.65184	0.00033979	2.5135	0.0013102	3.1653	0.00165	521.2767130639475	32.614	0.74189	32.422	32.162	32.904	-0.19261	0.075293	-0.00041532	NaN	42.396	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101970			23099	19002;1695	15898	15934							0.0176590252663118
HLSRDWCHLAR	11	Unmodified	_HLSRDWCHLAR_					0	0	0			REV__ENSG00000185269|ENST00000409678|NOTUM	REV__ENSG00000185269|ENST00000409678|NOTUM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.9007873535156	3	465.23505	1392.68332	0.96894	0.00045078	-2.3448	-0.0010909	-1.3759	-0.0006401	465.23427872044164	20.358	1.0237	20.162	19.608	20.632	-0.19577					46	20	4	0	0	0	0.02473	1	543	543		33.039	5.3955	1	948340	+		23100	27748	15899	15935	26720	26720					0.002686761399218085
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2703857421875	2	561.268424	1120.5223	-0.77983	-0.00043769	2.4659	0.001384	1.686	0.00094632	561.2702975131176	26.275	3.302	26.039	25.762	29.064	-0.23603					301	81	8	0	0	0	1.0665	1	1444	1444		37.159	5.6293	1	235830000	+		23101	37004	15900	15936	26721	26721					-0.03314511016696997
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2703857421875	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.147	1	25.979	25.479	26.479	-0.16816								0	0	0	0.7491	1	1317	1317		42.396	4.5846	1		+		23102	37004	15900	15936	26722	26722					-0.03314511016696997
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2706298828125	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.21	1	26.042	25.542	26.542	-0.16816								0	0	0	0.75225	1	1329	1329		44.117	3.3386	1		+		23103	37004	15900	15936	26723	26723					-0.03314511016696997
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2700805664062	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.346	1	26.178	25.678	26.678	-0.16816								0	0	0	0.73952	1	1353	1353		37.159	0.71236	1		+		23104	37004	15900	15936	26724	26724					-0.03314511016696997
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	OPSCC_40_ClassI_Rep-2	5	561.270263671875	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.418	1	26.25	25.75	26.75	-0.16816								0	0	0	0.75225	1	1365	1365		44.117	5.3632	1		+		23105	37004	15900	15936	26725	26725					-0.03314511016696997
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2702026367188	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.497	1	26.328	25.828	26.828	-0.16816								0	0	0	0.76915	1	1377	1377		53.351	12.573	1		+		23106	37004	15900	15936	26726	26726					-0.03314511016696997
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MSMS	OPSCC_40_ClassI_Rep-2	5	561.270263671875	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.577	1	26.409	25.909	26.909	-0.16816								0	0	0	0.75225	1	1389	1389		44.117	6.3053	1		+		23107	37004	15900	15936	26727	26727					-0.03314511016696997
HLSSIEFSCV	10	Unmodified	_HLSSIEFSCV_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.270263671875	2	561.268424	1120.5223	-1.2106	-0.00067947	3.0665	0.0017211	1.8559	0.0010416	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	0.91051	3	1407	1347;1372;1407		53.351	7.3792	1	242840000	+		23108	37004	15900	15936	26728;26729;26730	26730					-0.03314511016696997
HLSSRVVE	8	Unmodified	_HLSSRVVE_					0	0	0			REV__nc|ENSG00000178773|Q9UBL6|CPNE7	REV__nc|ENSG00000178773|Q9UBL6|CPNE7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.7568359375	2	463.756341	925.498129	0.17615	8.169E-05	0.05485	2.5437E-05	0.231	0.00010713	463.75620329119914	20.701	0.77844	20.534	20.296	21.074	-0.16774					30	15	4	0	0	0	0.91239	1	584	584		50.025	2.1089	1	319080	+		23109	27206	15901	15937	26731	26731					0.032400166119600726
HLSVPWNV	8	Unmodified	_HLSVPWNV_					0	0	0		ENST00000417262.5_1_1:202780753-202780990:+|nuORF	ENST00000417262.5_1_1:202780753-202780990:+|nuORF	ENST00000417262.5_1_1:202780753-202780990:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.25421142578125	2	476.255977	950.497401	-0.68428	-0.00032589	-3.8777	-0.0018468	-4.5619	-0.0021727	476.25416158960576	26.889	1.9551	26.97	26.456	28.411	0.081293					123	49	5	0	0	0	0.845	1	1337	1337		55.504	2.5675	1	17419000			23110	13912	15902	15938	26732	26732					0.020172219628989296
HLTAIADNASI	11	Unmodified	_HLTAIADNASI_					0	0	0			REV__ENSG00000155636|ENST00000286070|RBM45	REV__ENSG00000155636|ENST00000286070|RBM45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.2705688476562	2	563.29857	1124.58259	-0.019104	-1.0761E-05	2.7002	0.001521	2.681	0.0015102	563.2999486413012	63.889	0.65872	63.697	63.456	64.115	-0.19243					44	16	3	0	0	0	0.024643	1	7286	7286		85.161	35.719	1	1531400	+		23111	25016	15903	15939	26733	26733					0.02527922638023483
HLTALGESDL	10	Unmodified	_HLTALGESDL_					0	0	0			REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2728881835938	2	528.272021	1054.52949	-1.3541	-0.00071536	3.9036	0.0020622	2.5495	0.0013468	528.2741255285842	92.005	2.5491	92.005	91.299	93.848	0					227	60	6	0	0	0	0.52982	11	11672	11627;11648;11660;11672;11684;11696;11709;11734;11746;11758;11795		84.916	22.122	1	45968000	+		23112	35555	15904	15940	26734;26735;26736;26737;26738;26739;26740;26741;26742;26743;26744	26737					0.0044054485538254085
HLTALGESDL	10	Unmodified	_HLTALGESDL_					0	0	0			REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.27392578125	2	528.272021	1054.52949	-0.65496	-0.000346	3.3593	0.0017746	2.7044	0.0014286	528.2738695912601	92.008	2.8556	91.999	91.326	94.181	-0.0082932					232	68	6	0	0	0	0.45367	6	11613	11613;11625;11676;11701;11713;11724		93.195	24.409	1	52333000	+		23113	35555	15904	15940	26745;26746;26747;26748;26749;26750	26745					0.0044054485538254085
HLTALGESDL	10	Unmodified	_HLTALGESDL_					0	0	0			REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2738037109375	2	528.272021	1054.52949	0.37056	0.00019576	2.1814	0.0011524	2.5519	0.0013481	528.2732281795522	92.046	2.9306	92.056	91.359	94.289	0.0094147					197	70	4	0	0	0	0.45367	12	11572	11552;11560;11572;11584;11596;11609;11621;11633;11645;11658;11669;11681		93.195	24.409	1	55644000	+		23114	35555	15904	15940	26751;26752;26753;26754;26755;26756;26757;26758;26759;26760;26761;26762	26753					0.0044054485538254085
HLTALGESDL	10	Unmodified	_HLTALGESDL_					0	0	0			REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2733764648438	2	528.272021	1054.52949	-0.54817	-0.00028958	4.1424	0.0021883	3.5942	0.0018987	528.2739998122568	91.992	1.0475	91.87	91.457	92.505	-0.12242					48	24	3	0	0	0	0.74632	2	11297	11297;11311		64.207	7.4862	1	1552200	+		23115	35555	15904	15940	26763;26764	26763					0.0044054485538254085
HLTALGESDL	10	Unmodified	_HLTALGESDL_					0	0	0			REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	REV__ENST00000583810.5_1_17:8783958-8785234:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2738647460938	2	528.272021	1054.52949	0.18527	9.7875E-05	3.4796	0.0018382	3.6648	0.001936	528.2736082481291	92.042	1.0477	91.9	91.573	92.62	-0.14131					58	24	3	0	0	0	0.52982	2	11278	11278;11287		84.916	16.129	1	1907000	+		23116	35555	15904	15940	26765;26766	26765					0.0044054485538254085
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.311767578125	2	520.310949	1038.60735	-0.65049	-0.00033846	0.78576	0.00040884	0.13527	7.0382E-05	520.3114531601192	53.177	2.6721	53.177	52.901	55.573	0					120	75	2	0	0	0	0.020687	5	5767	5731;5743;5755;5767;5782		148.99	55.844	1	19173000			23117	1302	15905	15941	26767;26768;26769;26770;26771	26770					0.08958602511438585
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3118286132812	2	520.310949	1038.60735	-0.82585	-0.0004297	0.99819	0.00051937	0.17234	8.9672E-05	520.3115791855107	53.333	2.2933	53.186	52.53	54.823	-0.14723					112	63	2	0	0	0	0.020687	5	5719	5719;5731;5744;5757;5770		148.99	66.236	1	15104000			23118	1302	15905	15941	26772;26773;26774;26775;26776	26772					0.08958602511438585
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3114013671875	2	520.310949	1038.60735	-0.56138	-0.00029209	0.65036	0.00033839	0.088979	4.6297E-05	520.3114142085685	53.083	2.2418	53.178	52.489	54.731	0.095669					104	62	2	0	0	0	0.016758	5	5638	5638;5651;5663;5676;5689		153.04	57.221	1	15717000			23119	1302	15905	15941	26777;26778;26779;26780;26781	26777					0.08958602511438585
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.310949	1038.60735	-0.25738	-0.00013392	-3.0158	-0.0015692	-3.2732	-0.0017031	520.3106083108221	53.236	1.277	53.109	52.753	54.03	-0.12705	-0.054344	-0.003264	NaN	153.04	102	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1482900			23120	1302	15905	15941							0.08958602511438585
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.310949	1038.60735	0.29375	0.00015284	-3.8386	-0.0019973	-3.5449	-0.0018444	520.310324692225	53.467	1.0639	53.209	52.843	53.907	-0.25838	0.044795	-0.0041203	NaN	153.04	90	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1649800			23121	1302	15905	15941							0.08958602511438585
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000565738.1_1_16:75674022-75675473:-|nuORF;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.310949	1038.60735	0.015193	7.905E-06	-1.4644	-0.00076192	-1.4492	-0.00075402	520.3104749064433	53.313	0.88628	53.123	52.831	53.717	-0.18982	-0.040776	-0.0016496	NaN	153.04	70	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1772200			23122	1302	15905	15941							0.08958602511438585
HLTDRYNMY	9	Unmodified	_HLTDRYNMY_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5110778808594	3	404.853724	1211.53934	1.0196	0.00041277	0.37491	0.00015178	1.3945	0.00056456	404.85372706601675	32.11	0.47812	31.918	31.771	32.249	-0.19261					15	10	2	0	0	0	0.024381	1	2170	2170		29.17	0	1	148050			23123	7430	15906	15942	26782	26782					-0.05796590410864155
HLTLCRILC	9	Unmodified	_HLTLCRILC_					0	0	0		ENST00000513211.1_1_4:32147752-32156969:+|nuORF	ENST00000513211.1_1_4:32147752-32156969:+|nuORF	ENST00000513211.1_1_4:32147752-32156969:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3143920898438	2	536.293722	1070.57289	0.24071	0.00012909	-2.5669	-0.0013766	-2.3262	-0.0012475	536.2922999142212	84.016	0.30595	83.847	83.746	84.052	-0.16915					8	6	2	0	0	0	0.024506	1	10171	10171		30.504	0	1	87826			23124	15865	15907	15943	26783	26783					0.04042739827332298
HLTPQRNL	8	Unmodified	_HLTPQRNL_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265625	2	489.777608	977.540663	-1.2872	-0.00063044	4.1893	0.0020518	2.9021	0.0014214	489.77950475915515	55.591	0.70337	55.434	55.08	55.783	-0.15655					43	19	4	0	0	0	0.027866	1	5992	5992		55.504	19.886	1	994670	+		23125	20383	15908	15944	26784	26784					0.050994117401728545
HLTRKVVRN	9	Unmodified	_HLTRKVVRN_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2;ENST00000505435.3_1_5:70900220-70936922:+|nuORF;ENST00000510895.6_1_5:70898342-70931145:+|nuORF	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.8451538085938	2	561.846356	1121.67816	-0.4692	-0.00026362	-0.68037	-0.00038226	-1.1496	-0.00064588	561.8458359900303	95.569	1.081	95.417	95.055	96.136	-0.15186					84	24	5	0	0	0	0.99726	1	11757	11757		20.947	1.587	1	1438300			23126	4554	15909	15945	26785	26785					0.12218740339608303
HLTRLGGAV	9	Unmodified	_HLTRLGGAV_					0	0	0			REV__ENST00000216452.8_1_14:68060595-68066891:-|nuORF	REV__ENST00000216452.8_1_14:68060595-68066891:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.27484130859375	2	462.274701	922.534849	0.3822	0.00017668	-0.75468	-0.00034887	-0.37249	-0.00017219	462.2742970780849	21.55	1.0015	21.373	21.065	22.066	-0.17721					57	20	4	0	0	0	0.77768	1	649	649		40.778	6.6056	1	1516700	+		23127	29316	15910	15946	26786	26786					0.07048313228528968
HLVAECHHI	9	Unmodified	_HLVAECHHI_					0	0	0			REV__nc|ENSG00000166167|Q9Y297-2|BTRC	REV__nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3094482421875	2	529.763643	1057.51273	-1.9285	-0.0010217	3.9862	0.0021117	2.0577	0.0010901	529.7656367677375	29.493	0.47213	29.493	29.26	29.732	0					27	11	3	0	0	0	0.024354	1	1791	1791		47.916	15.961	1	132110	+		23128	25983	15911	15947	26787	26787					-0.013722345115638745
HLVCPASLL	9	Unmodified	_HLVCPASLL_					0	0	0			REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7693786621094	2	476.767863	951.521173	-0.02112	-1.0069E-05	3.9001	0.0018594	3.879	0.0018494	476.76957395561317	25.485	0.67179	25.314	25.118	25.79	-0.17151					28	15	2	0	0	0	0.67308	1	1189	1189		47.916	3.3845	1	581170	+		23129	35960	15912	15948	26788	26788					0.043473194050761776
HLVCPASLL	9	Unmodified	_HLVCPASLL_					0	0	0			REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.767863	951.521173	0.088256	4.2078E-05	3.7469	0.0017864	3.8351	0.0018285	476.7695515767937	25.401	0.61874	25.401	25.248	25.867	0	0.038809	-0.00027793	NaN	47.916	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51698	+		23130	35960	15912	15948							0.043473194050761776
HLVCPASLL	9	Unmodified	_HLVCPASLL_					0	0	0			REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.767863	951.521173	-0.3838	-0.00018298	4.3949	0.0020954	4.0111	0.0019124	476.76992834505074	25.455	0.44837	25.421	25.275	25.723	-0.034395	0.058774	0.00034005	NaN	47.916	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48734	+		23131	35960	15912	15948							0.043473194050761776
HLVCPASLL	9	Unmodified	_HLVCPASLL_					0	0	0			REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.767863	951.521173	0.41051	0.00019572	4.4186	0.0021066	4.8291	0.0023024	476.7697643054598	25.317	0.53724	25.397	25.254	25.792	0.08009	0.034775	0.00036259	NaN	47.916	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63841	+		23132	35960	15912	15948							0.043473194050761776
HLVCPASLL	9	Unmodified	_HLVCPASLL_					0	0	0			REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.767863	951.521173	-0.27645	-0.0001318	4.247	0.0020248	3.9705	0.001893	476.7697259387043	25.64	0.49979	25.413	25.271	25.771	-0.22683	0.051365	0.00019897	NaN	47.916	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592610	+		23133	35960	15912	15948							0.043473194050761776
HLVCPASLL	9	Unmodified	_HLVCPASLL_					0	0	0			REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	476.767863	951.521173	-0.19542	-9.3169E-05	3.9654	0.0018906	3.77	0.0017974	476.7696164279155	25.398	0.58176	25.227	25.039	25.621	-0.17078	-0.13529	-6.953E-05	NaN	47.916	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563670	+		23134	35960	15912	15948							0.043473194050761776
HLVCPASLL	9	Unmodified	_HLVCPASLL_					0	0	0			REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	REV__ENST00000607830.1_1_5:43033983-43034205:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	476.767863	951.521173	-0.02112	-1.0069E-05	3.9001	0.0018594	3.879	0.0018494	476.76957395561317	25.485	0.67179	25.314	25.118	25.79	-0.17151	-0.048432	-0.00013181	NaN	47.916	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581170	+		23135	35960	15912	15948							0.043473194050761776
HLVGVLALI	9	Unmodified	_HLVGVLALI_					0	0	0			REV__nc|nan|Q32M92-2|C15orf32	REV__nc|nan|Q32M92-2|C15orf32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.7387390136719	2	467.807845	933.601138	1.6094	0.00075291	-1.6224	-0.00075898	-0.012963	-6.0643E-06	467.8069383745667	23.683	0.59844	23.491	23.284	23.883	-0.19117					25	13	3	0	0	0	0.024475	1	913	913		29.842	15.177	1	148000	+		23136	37258	15913	15949	26789	26789					0.13168129070550094
HLVIAVVKNCV	11	Unmodified	_HLVIAVVKNCV_					0	0	0			REV__nc|ENSG00000182093|O00258-2|GET1	REV__nc|ENSG00000182093|O00258-2|GET1	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8564453125	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.776	1	91.627	91.127	92.127	-0.1487								0	0	0	1.1668	1	11255	11255		32.812	3.6424	1		+		23137	27448	15914	15950	26790	26790					0.10634899830392897
HLVILKVE	8	Unmodified	_HLVILKVE_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.26043701171875	2	475.805303	949.596052	-0.42097	-0.0002003	2.3528	0.0011195	1.9318	0.00091917	475.8055345007357	28.168	0.24003	28.016	27.922	28.162	-0.15195					6	5	2	0	0	0	0.027866	1	1605	1605		26.796	9.4311	1	58326	+		23138	24383	15915	15951	26791	26791					0.11923825207952632
HLVLLVLHLSV	11	Unmodified	_HLVLLVLHLSV_					0	0	0		ENST00000256646.6_1_1:120457390-120457519:-|nuORF	ENST00000256646.6_1_1:120457390-120457519:-|nuORF	ENST00000256646.6_1_1:120457390-120457519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.90234375	2	621.900266	1241.78598	0.29861	0.0001857	1.2585	0.00078263	1.5571	0.00096834	621.9009009435291	106.07	0.38474	105.94	105.7	106.09	-0.1238					22	13	2	0	0	0	1.0651	1	13213	13213		20.947	6.8098	1	137450			23139	11398	15916	15952	26792	26792					0.1747569215033309
HLVPLIERLGT	11	Unmodified	_HLVPLIERLGT_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENST00000524058.1_1_5:156810283-156816436:+|nuORF;ENST00000522892.1_1_5:156788429-156810457:+|nuORF	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	624.3757934570312	2	624.377155	1246.73976	0.38145	0.00023817	4.3927	0.0027427	4.7741	0.0029808	624.379794589076	105.22	0.4373	105.22	105.02	105.46	0.00096893					30	13	3	0	0	0	1.0399	1	13478	13478		27.882	3.3631	1	632940			23140	11022	15917	15953	26793	26793					0.12625627248235105
HLVQLESLF	9	Unmodified	_HLVQLESLF_					0	0	0			REV__nc|ENSG00000182220|O75787-2|ATP6AP2	REV__nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.302734375	2	543.303124	1084.5917	-0.2534	-0.00013767	-0.12115	-6.5822E-05	-0.37455	-0.0002035	543.3030164937979	74.606	1.4697	74.347	74.028	75.498	-0.25887					80	36	4	0	0	0	0.18915	1	9124	9124		90.777	8.5361	1	10820000	+		23141	27458	15918	15954	26794	26794					0.05278315994382865
HLVRFILPKE	10	Unmodified	_HLVRFILPKE_					0	0	0		ENST00000272849.7_2_2:206642940-206643144:+|nuORF	ENST00000272849.7_2_2:206642940-206643144:+|nuORF	ENST00000272849.7_2_2:206642940-206643144:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	626.3804931640625	2	626.38224	1250.74993	0.14483	9.0718E-05	-4.3854	-0.0027469	-4.2405	-0.0026562	626.3793744637064	104.44	1.1159	104.31	103.92	105.03	-0.12561					95	32	5	0	0	0	1.1179	1	12961	12961		19.997	0	1	2513500			23142	11656	15919	15955	26795	26795					0.13458234973472827
HLVSRGHIM	9	Oxidation (M)	_HLVSRGHIM(Oxidation (M))_		HLVSRGHIM(1)		HLVSRGHIM(66)	0	0	1			REV__ENSG00000166342|ENST00000327305|NETO1	REV__ENSG00000166342|ENST00000327305|NETO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2848510742188	2	533.284743	1064.55493	1.3288	0.00070863	-1.5448	-0.00082381	-0.21599	-0.00011518	533.283841821793	16.834	0.8735	16.68	16.485	17.358	-0.15376					31	17	2	0	0	0	0.40179	1	106	106		65.803	15.779	1	287690	+		23143	26002	15920	15956	26796	26796		771			0.025237408968223463
HLVSRGHIM	9	Oxidation (M)	_HLVSRGHIM(Oxidation (M))_		HLVSRGHIM(1)		HLVSRGHIM(85)	0	0	1			REV__ENSG00000166342|ENST00000327305|NETO1	REV__ENSG00000166342|ENST00000327305|NETO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.284912109375	2	533.284743	1064.55493	-0.62326	-0.00033237	0.39415	0.00021019	-0.22911	-0.00012218	533.2849051938086	16.802	0.84574	16.594	16.418	17.264	-0.20777					27	17	2	0	0	0	0.22754	2	94	94;106		85.359	24.956	1	277110	+		23144	26002	15920	15956	26797;26798	26797		771			0.025237408968223463
HLVSRGHIM	9	Oxidation (M)	_HLVSRGHIM(Oxidation (M))_					0	0	1			REV__ENSG00000166342|ENST00000327305|NETO1	REV__ENSG00000166342|ENST00000327305|NETO1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	533.284743	1064.55493	-0.62326	-0.00033237	0.39415	0.00021019	-0.22911	-0.00012218	533.2849051938086	16.802	0.84574	16.594	16.418	17.264	-0.20777	-0.038845	0.0025614	NaN	85.359	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277110	+		23145	26002	15920	15956				771			0.025237408968223463
HLVSRGHIM	9	Unmodified	_HLVSRGHIM_					0	0	0			REV__ENSG00000166342|ENST00000327305|NETO1	REV__ENSG00000166342|ENST00000327305|NETO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2871704101562	2	525.287285	1048.56002	0.52748	0.00027708	-0.65882	-0.00034607	-0.13134	-6.8991E-05	525.2867781594637	18.556	0.84067	18.399	18.148	18.989	-0.15637					39	16	4	0	0	0	0.22754	2	322	314;322		85.359	19.556	1	566740	+		23146	26002	15920	15957	26799;26800	26800					0.037680447594539146
HLVSRGHIM	9	Unmodified	_HLVSRGHIM_					0	0	0			REV__ENSG00000166342|ENST00000327305|NETO1	REV__ENSG00000166342|ENST00000327305|NETO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.287285	1048.56002	2.5195	0.0013235	-7.7833	-0.0040885	-5.2638	-0.002765	525.2822439337318	18.022	0.538	18.022	17.795	18.333	0	-0.29188	-0.0067262	NaN	85.359	18	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51559	+		23147	26002	15920	15957							0.037680447594539146
HLVSRGHIM	9	Unmodified	_HLVSRGHIM_					0	0	0			REV__ENSG00000166342|ENST00000327305|NETO1	REV__ENSG00000166342|ENST00000327305|NETO1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	525.287285	1048.56002	0.52748	0.00027708	-0.65882	-0.00034607	-0.13134	-6.8991E-05	525.2867781594637	18.556	0.84067	18.399	18.148	18.989	-0.15637	0.085391	0.00075868	NaN	85.359	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566740	+		23148	26002	15920	15957							0.037680447594539146
HLWGFLHSS	9	Unmodified	_HLWGFLHSS_					0	0	0			REV__ENST00000425443.6_1_6:75825634-75825772:-|nuORF	REV__ENST00000425443.6_1_6:75825634-75825772:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7532348632812	2	542.272158	1082.52976	-1.1115	-0.00060275	0.60594	0.00032859	-0.50558	-0.00027416	542.2726443620694	38.332	0.29738	38.153	37.939	38.237	-0.17929					12	8	2	0	0	0	0.024487	1	3154	3154		31.955	15.482	1	314890	+		23149	32254	15921	15958	26801	26801					-0.008199906340905727
HLWGRNQHS	9	Unmodified	_HLWGRNQHS_					0	0	0		ENST00000264852.8_2_3:113347457-113347640:+|nuORF	ENST00000264852.8_2_3:113347457-113347640:+|nuORF	ENST00000264852.8_2_3:113347457-113347640:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.7825927734375	2	567.781213	1133.54787	2.9078	0.001651	-0.95945	-0.00054476	1.9484	0.0011062	567.7805238134418	17.374	0.59455	17.374	17.102	17.697	0					28	11	3	0	0	0	0.99229	1	174	174		21.96	0	1	202810			23150	11574	15922	15959	26802	26802					-0.013558556594034599
HLWQLFGDRQ	10	Unmodified	_HLWQLFGDRQ_					0	0	0			REV__ENST00000300853.7_1_19:45912063-45912522:-|nuORF	REV__ENST00000300853.7_1_19:45912063-45912522:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.7766418457031	3	433.891278	1298.652	-0.83568	-0.00036259	-2.6668	-0.0011571	-3.5025	-0.0015197	433.88994188281026	29.379	0.47758	29.134	28.838	29.316	-0.24524					27	10	3	0	0	0	0.03519	1	1812	1812		45.022	11.983	1	212720	+		23151	30049	15923	15960	26803	26803					0.01462426377452175
HLWSAGLYF	9	Unmodified	_HLWSAGLYF_					0	0	0			REV__ENST00000569039.5_1_16:29831546-29831636:-|nuORF	REV__ENST00000569039.5_1_16:29831546-29831636:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.8025512695312	2	547.276909	1092.53927	-0.61123	-0.00033451	0.22939	0.00012554	-0.38184	-0.00020897	547.2768414454792	30.602	1.2116	30.357	29.82	31.031	-0.24415					50	28	3	0	0	0	0.024357	1	1994	1994		44.531	11.015	1	323770	+		23152	35363	15924	15961	26804	26804					-0.0033022234858890442
HLYDRRIVITR	11	Unmodified	_HLYDRRIVITR_					0	0	0			REV__ENSG00000142534|ENST00000270625|RPS11	REV__ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2829895019531	3	481.284398	1440.83137	0.24413	0.0001175	-2.2331	-0.0010748	-1.989	-0.00095726	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0834	1	13030	13030		15.921	0.58318	1	1053600	+		23153	24161	15925	15962	26805	26805					0.12858310665387762
HLYDRRIVITR	11	Unmodified	_HLYDRRIVITR_					0	0	0			REV__ENSG00000142534|ENST00000270625|RPS11	REV__ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2831726074219	3	481.284398	1440.83137	0.15022	7.2296E-05	-1.7944	-0.0008636	-1.6441	-0.0007913	481.2833604720617	101.32	1.8982	101.31	100.65	102.55	-0.0054474					137	43	4	0	0	0	1.044	1	12936	12936		26.75	3.3718	1	1065800	+		23154	24161	15925	15962	26806	26806					0.12858310665387762
HLYDRRIVITR	11	Unmodified	_HLYDRRIVITR_					0	0	0			REV__ENSG00000142534|ENST00000270625|RPS11	REV__ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.28326416015625	3	481.284398	1440.83137	0.76107	0.00036629	-2.6108	-0.0012565	-1.8497	-0.00089024	481.28308109732075	99.868	1.6804	99.743	98.24	99.92	-0.12504					91	43	4	0	0	0	1.0739	1	12386	12386		18.531	1.8137	1	416510	+		23155	24161	15925	15962	26807	26807					0.12858310665387762
HLYDRRIVITR	11	Unmodified	_HLYDRRIVITR_					0	0	0			REV__ENSG00000142534|ENST00000270625|RPS11	REV__ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.2830810546875	3	481.284398	1440.83137	0.3888	0.00018713	-2.2325	-0.0010745	-1.8437	-0.00088733	481.28322550437986	101.41	2.0202	101.23	100.66	102.68	-0.17178					149	48	5	0	0	0	1.0788	1	12629	12629		17.167	7.0628	1	742900	+		23156	24161	15925	15962	26808	26808					0.12858310665387762
HLYFETVTI	9	Unmodified	_HLYFETVTI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.7947387695312	2	561.795132	1121.57571	0.37351	0.00020984	-0.60533	-0.00034007	-0.23182	-0.00013024	561.7946274883778	71.201	1.8764	71.201	70.656	72.533	0					120	47	4	0	0	0	0.22754	2	8626	8615;8626		85.359	29.855	1	4721100			23157	2483	15926	15963	26809;26810	26810					0.019786097574751693
HLYFETVTI	9	Unmodified	_HLYFETVTI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.794921875	2	561.795132	1121.57571	0.31494	0.00017693	-0.55397	-0.00031122	-0.23903	-0.00013428	561.794643737454	71.57	2.2308	71.281	70.802	73.033	-0.28858					128	56	4	0	0	0	0.31247	3	8632	8632;8641;8654		73.975	13.856	1	4423300			23158	2483	15926	15963	26811;26812;26813	26811					0.019786097574751693
HLYFETVTI	9	Unmodified	_HLYFETVTI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.7944946289062	2	561.795132	1121.57571	-0.12157	-6.8297E-05	-0.07958	-4.4708E-05	-0.20115	-0.000113	561.7948904920611	71.303	1.675	71.314	70.937	72.612	0.010735					122	43	4	0	0	0	0.22754	2	8554	8554;8565		85.359	30.583	1	4027800			23159	2483	15926	15963	26814;26815	26814					0.019786097574751693
HLYHFATVGGT	11	Unmodified	_HLYHFATVGGT_					0	0	0			REV__ENST00000376566.8_1_X:48755271-48755857:+|nuORF	REV__ENST00000376566.8_1_X:48755271-48755857:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.87567138671875	3	401.536612	1201.58801	0.5391	0.00021647	4.0677	0.0016333	4.6068	0.0018498	401.53768807255796	37.603	0.45221	37.41	37.309	37.761	-0.193					20	11	2	0	0	0	0.024739	1	3025	3025		17.167	0.63689	1	191130	+		23160	31360	15927	15964	26816	26816					-0.00472353779491641
HLYVKLKY	8	Unmodified	_HLYVKLKY_					0	0	0		ENST00000496314.1_1_13:45009134-45009254:-|nuORF	ENST00000496314.1_1_13:45009134-45009254:-|nuORF	ENST00000496314.1_1_13:45009134-45009254:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2410888671875	2	532.318577	1062.6226	-1.3925	-0.00074128	-2.5976	-0.0013828	-3.9901	-0.002124	532.3170755542828	33.937	0.27216	33.762	33.662	33.934	-0.17557					11	6	2	0	0	0	0.027866	1	2465	2465		35.201	9.6267	1	74071			23161	15564	15928	15965	26817	26817					0.0937951409928246
HMDLCQAL	8	Unmodified	_HMDLCQAL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7509460449219	2	465.71223	929.409908	-1.525	-0.00071021	-1.2737	-0.0005932	-2.7987	-0.0013034	465.71027968882106	29.665	0.51777	29.665	29.296	29.814	0					13	12	2	0	0	0	0.027866	1	1841	1841		60.294	12.637	1	37847			23162	4485	15929	15966	26818	26818					-0.057620632945258876
HMFIALLIL	9	Unmodified	_HMFIALLIL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1;SOAT1|p.S211*|1|0.08|ENSG00000057252|chr1:179341159-179341160|-/T|frameshift_variant	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8143920898438	2	535.825181	1069.63581	-0.32024	-0.00017159	-0.062366	-3.3417E-05	-0.38261	-0.00020501	535.8257021805221	76.662	0.41094	76.674	76.405	76.816	0.011635					13	9	2	0	0	0	0.024541	1	9381	9381		21.702	7.5652	1	180670			23163	1203	15930	15967	26819	26819					0.10377628886999446
HMIIGYVLL	9	Unmodified	_HMIIGYVLL_					0	0	0			REV__ENSG00000141433|ENST00000450565|ADCYAP1	REV__ENSG00000141433|ENST00000450565|ADCYAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2415771484375	2	529.806988	1057.59942	-1.2338	-0.00065367	-3.4036	-0.0018033	-4.6374	-0.0024569	529.804977031757	43.873	0.49621	43.729	43.497	43.994	-0.14471					32	13	4	0	0	0	0.024389	1	4154	4154		29.842	1.9593	1	1225900	+		23164	24085	15931	15968	26820	26820					0.07292751990303259
HMKTHRGAT	9	Unmodified	_HMKTHRGAT_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.2789916992188	2	519.766717	1037.51888	-0.215	-0.00011175	1.1748	0.00061062	0.9598	0.00049887	519.7661553085753	61.408	0.6157	61.408	61.18	61.796	0					31	15	3	0	0	0	0.024466	1	7163	7163		39.253	12.56	1	491830			23165	10454	15932	15969	26821	26821					0.0016228371998749935
HMLASLTR	8	Unmodified	_HMLASLTR_					0	0	0		ENST00000370018.7_1_20:62289788-62290707:+|nuORF;ENST00000488316.1_1_20:62290002-62290707:+|nuORF;ENST00000356810.5_1_20:62289730-62290707:+|nuORF	ENST00000370018.7_1_20:62289788-62290707:+|nuORF	ENST00000370018.7_1_20:62289788-62290707:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	464.75531005859375	2	464.755287	927.496021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.001	1	18.797	18.297	19.297	-0.20371								0	0	0	0.81261	1	363	363		33.516	1.5607	1				23166	12679	15933	15970	26822	26822					0.029372646024853566
HMLFGVSL	8	Unmodified	_HMLFGVSL_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.77752685546875	2	452.241481	902.468409	-0.021636	-9.7846E-06	4.2369	0.0019161	4.2152	0.0019063	452.2433927155062	40.966	0.42498	40.989	40.899	41.324	0.023006					16	11	2	0	0	0	0.027866	1	3643	3643		14.664	0	1	372010			23167	1024	15934	15971	26823	26823					0.013273613422597919
HMLWLKRLSTL	11	Unmodified	_HMLWLKRLSTL_					0	0	0			REV__ENSG00000131409|ENST00000652263|LRRC4B	REV__ENSG00000131409|ENST00000652263|LRRC4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.942138671875	3	466.607713	1396.80131	-0.089898	-4.1947E-05	0.81074	0.0003783	0.72084	0.00033635	466.6080804541521	100.51	2.3323	100.33	99.316	101.65	-0.17088					127	63	3	0	0	0	1.0621	1	12426	12426		21.78	3.2494	1	684720	+		23168	23209	15935	15972	26824	26824					0.11878235675885662
HMPPQLET	8	Unmodified	_HMPPQLET_					0	0	0		ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155500050-155531112:+|nuORF	ENSG00000184863|ENST00000401878|RBM33	ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.284912109375	2	476.731477	951.448402	-0.22263	-0.00010613	0.15789	7.527E-05	-0.064741	-3.0864E-05	476.7311959011675	25.921	1.5245	25.75	24.558	26.083	-0.17078					44	38	2	0	0	0	0.027866	1	1126	1126		24.203	8.5609	1	151240			23169	9375	15936	15973	26825	26825					-0.02926434388348298
HMQDLQEVT	9	Unmodified	_HMQDLQEVT_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8084106445312	2	550.755681	1099.49681	-0.62152	-0.0003423	-0.57053	-0.00031422	-1.192	-0.00065653	551.2565333254627	55.466	0.59959	55.251	55.037	55.637	-0.21551					33	16	3	0	0	0	0.024477	1	5971	5971		20.947	0	1	206840			23170	7815	15937	15974	26826	26826					-0.0489598553911037
HNARRLEK	8	Unmodified	_HNARRLEK_					0	0	0			REV__ENSG00000122870|ENST00000373886|BICC1	REV__ENSG00000122870|ENST00000373886|BICC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2789916992188	2	512.293956	1022.57336	3.1571	0.0016174	-2.9368	-0.0015045	0.22023	0.00011282	512.2923472146566	18.825	0.73783	18.888	18.501	19.239	0.063307					20	14	2	0	0	0	0.027866	1	328	328		40.778	7.2626	1	12932	+		23171	22668	15938	15975	26827	26827					0.06297618863050047
HNARSSPREP	10	Unmodified	_HNARSSPREP_					0	0	0			REV__SEC16A|p.S1226N|1|0.46|ENSG00000148396|chr9:136472002-136472002|C/T|missense_variant	REV__SEC16A|p.S1226N|1|0.46|ENSG00000148396|chr9:136472002-136472002|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.3502197265625	2	575.789235	1149.56392	1.4714	0.00084719	2.8336	0.0016316	4.305	0.0024788	576.2924339660659	17.136	0.35254	16.982	16.756	17.108	-0.15403					8	6	2	0	0	0	0.03519	1	145	145		18.262	6.0554	1	17912	+		23172	37471	15939	15976	26828	26828					-0.00488194213130555
HNAYENQDP	9	Unmodified	_HNAYENQDP_					0	0	0			REV__ENST00000377793.8_1_11:63719766-63719884:+|nuORF	REV__ENST00000377793.8_1_11:63719766-63719884:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8211059570312	2	544.225602	1086.43665	-1.3441	-0.00073148	-3.5755	-0.0019459	-4.9196	-0.0026774	544.223781603201	47.871	0.70094	47.934	47.712	48.413	0.063213					27	19	2	0	0	0	0.024405	1	4765	4765		35.618	15.622	1	306090	+		23173	31384	15940	15977	26829	26829					-0.10310959878006543
HNDKYISN	8	Unmodified	_HNDKYISN_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2603454589844	2	495.735606	989.456658	-0.96149	-0.00047665	3.6648	0.0018168	2.7033	0.0013401	495.7372424493151	29.714	0.64869	29.714	29.408	30.057	0					20	15	2	0	0	0	0.027866	1	1827	1827		23.042	7.4007	1	45852			23174	6240	15941	15978	26830	26830					-0.038491641473797245
HNDKYISN	8	Unmodified	_HNDKYISN_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.735606	989.456658	-0.78316	-0.00038824	-3.1052	-0.0015394	-3.8884	-0.0019276	495.7358612838442	30.153	0.17409	29.975	29.866	30.04	-0.17818	0.20358	-0.0021885	NaN	35.618	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33426			23175	6240	15941	15978							-0.038491641473797245
HNDSTLVNAFY	11	Unmodified	_HNDSTLVNAFY_					0	0	0			REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	640.217529296875	2	640.798934	1279.58332	-1.6979	-0.001088	-0.50229	-0.00032186	-2.2002	-0.0014099	640.7979966046242	72.666	0.38594	72.389	72.197	72.582	-0.2769					17	8	3	0	0	0	0.024803	1	8494	8494		52.937	8.8199	1	168440	+		23176	28514	15942	15979	26831	26831					-0.04529282712883287
HNDYKVVSPAL	11	Unmodified	_HNDYKVVSPAL_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.8290405273438	2	621.827495	1241.64044	0.016614	1.0331E-05	3.2176	0.0020008	3.2342	0.0020111	621.8296146566832	98.983	0.44028	98.814	98.633	99.074	-0.16862					22	9	3	0	0	0	1.0292	1	12258	12258		30.318	7.7381	1	82810			23177	3340	15943	15980	26832	26832					0.029281845634841375
HNFLKREPN	9	Unmodified	_HNFLKREPN_					0	0	0		ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.3165893554688	2	577.806897	1153.59924	-0.083334	-4.8151E-05	2.8522	0.001648	2.7689	0.0015999	577.8084748119106	72.162	0.24353	71.9	71.801	72.045	-0.26199					14	5	3	0	0	0	0.024541	1	8445	8445		15.642	0	1	386320			23178	3963	15944	15981	26833	26833					0.028584683146618772
HNFTGPVL	8	Unmodified	_HNFTGPVL_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.73516845703125	2	442.734877	883.455202	2.0725	0.00091755	-1.9509	-0.00086372	0.12159	5.383E-05	442.7338704574741	23.459	1.7702	23.268	22.942	24.713	-0.19117					121	40	6	0	0	0	0.93274	1	897	897		47.916	0	1	7639300	+		23179	23118	15945	15982	26834	26834					0.008812465545361192
HNHTYHLQPS	10	Unmodified	_HNHTYHLQPS_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	616.7495727539062	2	617.291611	1232.56867	-1.3991	-0.00086367	-0.10216	-6.306E-05	-1.5013	-0.00092673	617.2917119173446	48.633	0.44229	48.532	48.323	48.765	-0.1008					14	11	2	0	0	0	0.03519	1	4825	4825		80.455	10.043	1	123940			23180	17284	15946	15983	26835	26835					-0.03831310070381733
HNHTYHLQPS	10	Unmodified	_HNHTYHLQPS_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	616.7498168945312	2	617.291611	1232.56867	-0.028646	-1.7683E-05	-1.5605	-0.00096328	-1.5891	-0.00098096	617.2902747464151	48.291	0.46688	48.104	47.902	48.368	-0.18684					17	12	2	0	0	0	0.03519	1	4812	4812		101.25	0	1	147410			23181	17284	15946	15983	26836	26836					-0.03831310070381733
HNILLPISV	9	Unmodified	_HNILLPISV_					0	0	0			REV__ENSG00000124207|ENST00000262982|CSE1L	REV__ENSG00000124207|ENST00000262982|CSE1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.3045959472656	2	503.30821	1004.60187	-0.26905	-0.00013542	-2.8073	-0.0014129	-3.0763	-0.0015483	503.3067284450599	95.901	0.34431	95.901	95.605	95.95	0					10	7	2	0	0	0	0.77768	1	12222	12222		40.778	1.5253	1	1572500	+		23182	22747	15947	15984	26837	26837					0.09974923719607887
HNILLPISV	9	Unmodified	_HNILLPISV_					0	0	0			REV__ENSG00000124207|ENST00000262982|CSE1L	REV__ENSG00000124207|ENST00000262982|CSE1L	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	503.30821	1004.60187	-0.26905	-0.00013542	-2.8073	-0.0014129	-3.0763	-0.0015483	503.3067284450599	95.901	0.34431	95.901	95.605	95.95	0	0	0	NaN	40.778	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1572500	+		23183	22747	15947	15984							0.09974923719607887
HNKLGWVL	8	Unmodified	_HNKLGWVL_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827100-1828231:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.77899169921875	2	483.779619	965.544686	-0.2805	-0.0001357	0.60429	0.00029234	0.32379	0.00015664	483.77957450296196	52.066	0.98904	51.947	51.61	52.599	-0.11875					58	25	3	0	0	0	0.40853	1	5396	5396		96.048	42.696	1	1598100			23184	6911	15948	15985	26838	26838					0.06053501233895986
HNKLGWVL	8	Unmodified	_HNKLGWVL_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827100-1828231:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.779619	965.544686	-1.4677	-0.00071004	1.5381	0.00074408	0.070354	3.4036E-05	483.780199143671	52.317	0.76193	52.048	51.831	52.593	-0.26903	0.062318	0.00023678	NaN	96.048	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1683600			23185	6911	15948	15985							0.06053501233895986
HNKLGWVL	8	Unmodified	_HNKLGWVL_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827100-1828231:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.779619	965.544686	0.28001	0.00013546	1.5176	0.00073416	1.7976	0.00086963	483.7792921610936	52.146	1.6157	51.962	51.561	53.177	-0.18404	-0.023571	0.00021694	NaN	96.048	76	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1718500			23186	6911	15948	15985							0.06053501233895986
HNKPPPEPT	9	Unmodified	_HNKPPPEPT_					0	0	0			REV__ENST00000261978.8_2_14:74966967-74967147:-|nuORF	REV__ENST00000261978.8_2_14:74966967-74967147:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2821960449219	2	508.761623	1015.50869	-0.40119	-0.00020411	2.9681	0.00151	2.5669	0.0013059	508.76256720553505	23.577	0.46218	23.397	23.318	23.78	-0.17989					17	10	2	0	0	0	0.024477	1	939	939		44.117	19.914	1	64519	+		23187	29644	15949	15986	26839	26839					0.001559992663715093
HNKRKIIA	8	Unmodified	_HNKRKIIA_					0	0	0		nc|ENSG00000152291|O43493-7|TGOLN2;ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	nc|ENSG00000152291|O43493-7|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.3107604980469	2	490.311618	978.608683	0.72161	0.00035381	-0.60561	-0.00029694	0.116	5.6876E-05	490.3111648184446	17.686	0.54839	17.532	17.358	17.906	-0.15403					27	10	3	0	0	0	0.78609	1	215	215		60.294	26.778	1	193680			23188	18385;18384	15950	15987	26840	26840					0.1185228139083847
HNKRKIIA	8	Unmodified	_HNKRKIIA_					0	0	0		nc|ENSG00000152291|O43493-7|TGOLN2;ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	nc|ENSG00000152291|O43493-7|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.311279296875	2	490.311618	978.608683	-0.048712	-2.3884E-05	0.20614	0.00010107	0.15743	7.7189E-05	490.31154256065025	17.694	0.59724	17.488	17.315	17.912	-0.20669					23	11	3	0	0	0	1.0133	1	209	209		35.201	1.6851	1	144160			23189	18385;18384	15950	15987	26841	26841					0.1185228139083847
HNLANYMFFL	10	Unmodified	_HNLANYMFFL_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.25836181640625	3	423.874348	1268.60121	-0.64809	-0.00027471	-4.463	-0.0018918	-5.1111	-0.0021665	424.20668507720484	27.14	0.48395	27.14	26.951	27.435	0					17	12	2	0	0	0	0.03519	1	1473	1473		42.864	22.027	1	183430			23190	9837	15951	15988	26842	26842					-0.02234238991741222
HNLDYLYHNLF	11	Unmodified	_HNLDYLYHNLF_					0	0	0			REV__ENSG00000110057|ENST00000227471|UNC93B1	REV__ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.64666748046875	3	483.570093	1447.68845	0.24211	0.00011708	0.54302	0.00026259	0.78513	0.00037967	483.9048808215323	46.628	0.35059	46.532	46.403	46.754	-0.096653					15	9	2	0	0	0	0.024727	1	4541	4541		29.551	7.7703	1	257670	+		23191	21834	15952	15989	26843	26843					-0.017487415164850972
HNLDYLYHNLF	11	Unmodified	_HNLDYLYHNLF_					0	0	0			REV__ENSG00000110057|ENST00000227471|UNC93B1	REV__ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.64642333984375	3	483.570093	1447.68845	-0.1973	-9.5407E-05	0.40805	0.00019732	0.21076	0.00010192	483.5700974392202	46.819	0.54449	46.625	46.415	46.959	-0.19387					19	15	2	0	0	0	0.024782	1	4573	4573		31.634	13.103	1	196280	+		23192	21834	15952	15989	26844	26844					-0.017487415164850972
HNLIINEPK	9	Unmodified	_HNLIINEPK_					0	0	0			REV__ENST00000577881.1_1_17:60316192-60324457:-|nuORF	REV__ENST00000577881.1_1_17:60316192-60324457:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7921142578125	2	539.306198	1076.59784	-1.5545	-0.00083833	0.96416	0.00051998	-0.59029	-0.00031835	539.3066355971731	38.042	0.88371	37.824	37.607	38.491	-0.21849					33	24	3	0	0	0	0.024541	1	3059	3059		17.365	0	1	169260	+		23193	35483	15953	15990	26845	26845					0.06260834225895451
HNLVLRRRP	9	Unmodified	_HNLVLRRRP_					0	0	0			REV__ENSG00000261587|ENST00000696146|TMEM249	REV__ENSG00000261587|ENST00000696146|TMEM249	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	580.3383178710938	2	580.859798	1159.70504	0.3117	0.00018106	-1.4653	-0.00085114	-1.1536	-0.00067008	580.8589544383422	21.777	0.29037	21.599	21.397	21.688	-0.17721					8	5	2	0	0	0	0.024436	1	696	696		30.504	0	1	12643	+		23194	29114	15954	15991	26846	26846					0.13157848950777407
HNMTLALET	9	Unmodified	_HNMTLALET_					0	0	0			REV__ENSG00000123338|ENST00000293373|NCKAP1L	REV__ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7339477539062	2	515.255317	1028.49608	-0.077679	-4.0025E-05	-4.2148	-0.0021717	-4.2925	-0.0022117	515.2530744808988	41.975	0.47125	41.745	41.394	41.865	-0.23029					18	12	2	0	0	0	0.024323	1	3744	3744		44.117	0	1	245690	+		23195	22689	15955	15992	26847	26847					-0.01702780188156794
HNNFVAIL	8	Unmodified	_HNNFVAIL_					0	0	0		ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2571105957031	2	464.255977	926.497401	-0.17845	-8.2847E-05	3.5101	0.0016296	3.3316	0.0015467	464.2575267943504	35.341	0.84058	35.125	34.833	35.674	-0.21556					53	21	4	0	0	0	0.88442	1	2671	2671		52.299	6.3472	1	1235500			23196	3142	15956	15993	26848	26848					0.031212219629082938
HNVEKQDI	8	Unmodified	_HNVEKQDI_					0	0	0		nc|ENSG00000211695|Q99603|TRGV9	nc|ENSG00000211695|Q99603|TRGV9	nc|ENSG00000211695|Q99603|TRGV9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2898254394531	2	491.751256	981.487959	-0.03806	-1.8716E-05	3.8276	0.0018822	3.7896	0.0018635	491.753288889174	50.435	0.42946	50.285	50.131	50.56	-0.15036					23	12	3	0	0	0	0.027866	1	5273	5273		29.15	11.785	1	155590			23197	18688	15957	15994	26849	26849					-0.0035259111328969084
HPADNRTQI	9	Unmodified	_HPADNRTQI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.267333984375	2	526.267604	1050.52066	-1.1287	-0.00059399	0.74634	0.00039277	-0.38234	-0.00020121	526.2679043943546	22.268	0.88308	22.268	21.965	22.848	0					53	18	4	0	0	0	0.70156	2	775	762;775		45.972	6.7194	1	863970			23198	6301	15958	15995	26850;26851	26851					-0.002583839904218621
HPADNRTQI	9	Unmodified	_HPADNRTQI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2672729492188	2	526.267604	1050.52066	-0.58375	-0.00030721	0.26773	0.0001409	-0.31602	-0.00016631	526.267646865227	22.37	0.93428	22.295	21.987	22.921	-0.075296					49	19	4	0	0	0	0.50848	2	777	765;777		58.782	14.665	1	828080			23199	6301	15958	15995	26852;26853	26853					-0.002583839904218621
HPADNRTQI	9	Unmodified	_HPADNRTQI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.267604	1050.52066	-0.999	-0.00052574	-0.13495	-7.1019E-05	-1.1339	-0.00059676	526.2674349416992	22.157	0.57802	22.231	21.981	22.559	0.073954	-0.03367	-0.00059731	NaN	58.782	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55866			23200	6301	15958	15995							-0.002583839904218621
HPAHEVLLT	9	Unmodified	_HPAHEVLLT_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7948913574219	2	508.779816	1015.54508	-0.0057004	-2.9003E-06	-1.7343	-0.0008824	-1.74	-0.0008853	508.7789351975257	78.866	0.76238	78.71	78.427	79.189	-0.15591					36	17	3	0	0	0	0.024523	1	9404	9404		21.96	0	1	377440	+		23201	28172	15959	15996	26854	26854					0.03792876163083747
HPAIRTLS	8	Unmodified	_HPAIRTLS_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.761474609375	2	447.761426	893.5083	-0.49737	-0.0002227	0.58185	0.00026053	0.084476	3.7825E-05	447.7615598060648	25.722	0.65878	25.495	25.231	25.89	-0.22683					33	15	3	0	0	0	1.0106	1	1244	1244		35.618	3.6634	1	1350000			23202	5081	15960	15997	26855	26855					0.05728624337200472
HPARHKLR	8	Unmodified	_HPARHKLR_					0	0	0			REV__ENST00000497152.6_1_15:91479252-91479489:+|nuORF	REV__ENST00000497152.6_1_15:91479252-91479489:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.2911071777344	2	507.807034	1013.59952	-0.39161	-0.00019886	-3.1217	-0.0015852	-3.5133	-0.0017841	507.80575215752464	27.341	0.37396	27.184	27.104	27.477	-0.15664					9	8	2	0	0	0	0.027866	1	1511	1511		18.324	4.1873	1	60423	+		23203	33845	15961	15998	26856	26856					0.09325932825174732
HPARKLLSL	9	Unmodified	_HPARKLLSL_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-4|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.8273315429688	2	517.827101	1033.63965	-0.23281	-0.00012055	0.046691	2.4178E-05	-0.18611	-9.6375E-05	517.8270016035785	35.053	0.98823	34.838	34.508	35.496	-0.21556					65	24	4	0	0	0	0.32811	3	2639	2617;2627;2639		71.877	29.403	1	2406100			23204	18267	15962	15999	26857;26858;26859	26859					0.1241743470509391
HPARKLLSL	9	Unmodified	_HPARKLLSL_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-4|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.8270263671875	2	517.827101	1033.63965	-0.26648	-0.00013799	0.12247	6.3416E-05	-0.14401	-7.4572E-05	517.8270645502834	35.042	1.065	34.83	34.519	35.584	-0.21246					68	26	4	0	0	0	0.2508	3	2639	2616;2626;2639		82.241	32.216	1	2439700			23205	18267	15962	15999	26860;26861;26862	26862					0.1241743470509391
HPARKLLSL	9	Unmodified	_HPARKLLSL_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-4|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.8272094726562	2	517.827101	1033.63965	-0.39319	-0.00020361	0.21965	0.00011374	-0.17354	-8.9863E-05	517.8270991961155	34.968	0.93539	34.781	34.479	35.415	-0.18675					65	23	4	0	0	0	0.28753	3	2604	2593;2604;2617		77.318	34.921	1	2489500			23206	18267	15962	15999	26863;26864;26865	26864					0.1241743470509391
HPATRTVL	8	Unmodified	_HPATRTVL_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.7615661621094	2	447.761426	893.5083	-0.49737	-0.0002227	0.58185	0.00026053	0.084476	3.7825E-05	447.7615598060648	25.722	0.65878	25.495	25.231	25.89	-0.22683					33	15	3	0	0	0	1.0009	1	1255	1255		37.159	11.709	1	1350000			23207	4977	15963	16000	26866	26866					0.057286243371777346
HPATRTVL	8	Unmodified	_HPATRTVL_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.76141357421875	2	447.761426	893.5083	-0.14101	-6.3138E-05	0.23676	0.00010601	0.095755	4.2875E-05	447.76137005371777	25.552	0.67179	25.381	25.118	25.79	-0.17151					40	15	4	0	0	0	1.0516	1	1211	1211		29.15	3.6994	1	1064200			23208	4977	15963	16000	26867	26867					0.057286243371777346
HPATRTVL	8	Unmodified	_HPATRTVL_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	447.761426	893.5083	-0.20697	-9.2675E-05	0.29015	0.00012992	0.083171	3.7241E-05	447.76142034866785	25.436	0.542	25.265	25.039	25.581	-0.17078	-0.11483	-5.9515E-05	NaN	37.159	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1118700			23209	4977	15963	16000							0.057286243371777346
HPDLLAEQT	9	Unmodified	_HPDLLAEQT_					0	0	0		ENST00000468535.5_1_7:1586590-1589169:-|nuORF	ENST00000468535.5_1_7:1586590-1589169:-|nuORF	ENST00000468535.5_1_7:1586590-1589169:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7693481445312	2	512.258914	1022.50327	-0.84991	-0.00043537	0.24336	0.00012467	-0.60654	-0.00031071	512.258966777578	38.029	1.141	37.811	37.535	38.676	-0.21848					58	31	3	0	0	0	0.024381	1	3221	3221		45.952	25.005	1	1930200			23210	14874	15964	16001	26868	26868					-0.00707724316112035
HPDLLAEQT	9	Unmodified	_HPDLLAEQT_					0	0	0		ENST00000468535.5_1_7:1586590-1589169:-|nuORF	ENST00000468535.5_1_7:1586590-1589169:-|nuORF	ENST00000468535.5_1_7:1586590-1589169:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.258914	1022.50327	-0.94452	-0.00048384	0.55308	0.00028332	-0.39144	-0.00020052	512.2591097586424	38.036	1.0372	37.815	37.542	38.579	-0.22149	-0.0029633	0.00049198	NaN	29.15	66	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1943900			23211	14874	15964	16001							-0.00707724316112035
HPEEDHRTI	9	Unmodified	_HPEEDHRTI_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.2858276367188	2	567.270344	1132.52613	-0.88496	-0.00050201	-0.46486	-0.0002637	-1.3498	-0.00076571	567.2701267124789	62.977	0.56805	62.738	62.492	63.06	-0.23926					24	13	2	0	0	0	0.024506	1	7328	7328		30.504	4.9296	1	242830			23212	11038	15965	16002	26869	26869					-0.03482705198621261
HPEHRSCHV	9	Unmodified	_HPEHRSCHV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;ENST00000346329.7_1_11:70281557-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2529296875	2	551.253974	1100.4934	-0.81354	-0.00044847	-0.47776	-0.00026337	-1.2913	-0.00071184	551.2535923517589	21.454	0.96196	21.364	21.01	21.972	-0.090092					52	19	4	0	0	0	0.43973	1	659	659		63.306	1.1989	1	539660			23213	18102	15966	16003	26870	26870					-0.05283190802470017
HPERCQRPVP	10	Unmodified	_HPERCQRPVP_					0	0	0		ENST00000421674.5_1_15:44216478-44487163:-|nuORF	ENST00000421674.5_1_15:44216478-44487163:-|nuORF	ENST00000421674.5_1_15:44216478-44487163:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.877197265625	3	406.876863	1217.60876	1.3745	0.00055926	4.2637	0.0017348	5.6382	0.0022941	406.8785851414845	19.621	1.0542	19.621	19.366	20.42	0					59	21	4	0	0	0	1.0816	1	422	422		35.152	1.0655	1	1239200			23214	13996	15967	16004	26871	26871					0.008659133285391363
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.2553100585938	2	543.255848	1084.49714	-1.7388	-0.00094459	1.2843	0.00069768	-0.45449	-0.0002469	543.2564434154483	30.197	1.1517	30.197	29.895	31.047	0					65	27	4	0	0	0	0.34489	2	1933	1920;1933		69.628	16.276	1	1729200			23215	3431	15968	16005	26872;26873	26873					-0.041725658192717674
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.2555541992188	2	543.255848	1084.49714	-1.186	-0.00064428	0.80947	0.00043975	-0.37649	-0.00020453	543.2561891124572	30.137	1.1138	30.145	29.797	30.911	0.0086708					64	26	4	0	0	0	0.2508	1	1905	1905		82.241	15.811	1	2079200			23216	3431	15968	16005	26874	26874					-0.041725658192717674
HPESERISM	9	Unmodified	_HPESERISM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.2554931640625	2	543.255848	1084.49714	-1.7779	-0.00096585	1.4174	0.00077001	-0.3605	-0.00019584	543.2565286462312	29.866	1.3602	29.944	29.646	31.006	0.078344					72	32	5	0	0	0	0.51687	1	1825	1825		58.23	6.8945	1	1691200			23217	3431	15968	16005	26875	26875					-0.041725658192717674
HPFLLLILL	9	Unmodified	_HPFLLLILL_					0	0	0		nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8190307617188	2	539.854796	1077.69504	-0.34688	-0.00018727	2.2909	0.0012368	1.944	0.0010495	539.8560458546169	74.368	0.17437	74.186	74.049	74.224	-0.18279					6	3	2	0	0	0	0.024541	1	8740	8740		14.664	0	1	91482			23218	9521	15969	16006	26876	26876					0.15929848172868333
HPGAGGTADL	10	Unmodified	_HPGAGGTADL_					0	0	0		ENST00000372755.7_1_10:75757913-75758081:+|nuORF	ENST00000372755.7_1_10:75757913-75758081:+|nuORF	ENST00000372755.7_1_10:75757913-75758081:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.7615966796875	2	448.217049	894.419545	-0.20309	-9.103E-05	0.39229	0.00017583	0.1892	8.4801E-05	448.21707082348473	25.437	0.58176	25.267	25.039	25.621	-0.17078					31	13	3	0	0	0	0.03519	1	1201	1201		14.865	0	1	725480			23219	13052	15970	16007	26877	26877					-0.03188835693163128
HPGLLHTK	8	Unmodified	_HPGLLHTK_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.77947998046875	2	451.763969	901.513385	-0.28766	-0.00012995	4.1158	0.0018594	3.8282	0.0017294	451.7656779740846	26.073	0.4194	26.05	25.864	26.283	-0.023087					17	9	3	0	0	0	0.027866	1	1270	1270		7.6903	0	1	45329	+		23220	28137	15971	16008	26878	26878					0.058689281998113074
HPGRPLRPL	9	Unmodified	_HPGRPLRPL_					0	0	0			REV__ENST00000585895.1_19:929275-929473:+|nuORF	REV__ENST00000585895.1_19:929275-929473:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2451782226562	2	521.817067	1041.61958	0.031578	1.6478E-05	-2.2667	-0.0011828	-2.2351	-0.0011663	521.8156148566709	50.273	0.3287	50.354	50.148	50.477	0.080994					22	9	3	0	0	0	0.024487	1	5204	5204		31.955	0	1	570530	+		23221	35587	15972	16009	26879	26879					0.1004368376511593
HPHIIKLVL	9	Unmodified	_HPHIIKLVL_					0	0	0		ENST00000397006.2_1_5:40777312-40798264:-|nuORF	ENST00000397006.2_1_5:40777312-40798264:-|nuORF	ENST00000397006.2_1_5:40777312-40798264:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.3435668945312	2	535.347669	1068.68079	-0.84989	-0.00045499	-3.2885	-0.0017605	-4.1384	-0.0022155	535.3467219660339	76.461	0.92637	76.233	75.927	76.853	-0.22843					59	22	4	0	0	0	0.80658	1	9395	9395		38.806	5.9937	1	1827500			23222	13573	15973	16010	26880	26880					0.14919195744550962
HPHIVKLI	8	Unmodified	_HPHIVKLI_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;ENSG00000120899|ENST00000346049|PTK2B;nc|ENSG00000120899|Q14289-2|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	nc|ENSG00000169398|Q05397-7|PTK2;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.73516845703125	2	478.805637	955.596721	-0.4957	-0.00023734	0.75733	0.00036262	0.26164	0.00012527	478.80572994453996	60.667	0.56415	60.413	60.171	60.736	-0.25373					25	13	3	0	0	0	0.027866	1	6716	6716		15.636	0	1	376410			23223	7936;3845	15974	16011	26881	26881					0.11714664647661266
HPHPPPQRP	9	Unmodified	_HPHPPPQRP_					0	0	0			REV__RHOBTB2|p.R695Afs*71|1|0.08|ENSG00000008853|chr8:23017367-23017368|-/GC|frameshift_variant	REV__RHOBTB2|p.R695Afs*71|1|0.08|ENSG00000008853|chr8:23017367-23017368|-/GC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3115844726562	2	531.783225	1061.5519	-0.65803	-0.00034993	2.3296	0.0012389	1.6716	0.00088893	531.784943022125	35.487	0.23447	35.301	35.18	35.415	-0.18675					7	5	2	0	0	0	0.024443	1	2691	2691		44.531	16.649	1	136390	+		23224	37441	15975	16012	26882	26882					0.023582338343203446
HPHPVYLGAA	10	Unmodified	_HPHPVYLGAA_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.8135375976562	2	531.279983	1060.54541	-0.76163	-0.00040464	0.11752	6.2437E-05	-0.6441	-0.0003422	531.2797689948414	78.167	1.4479	78.167	77.876	79.323	0					48	34	2	0	0	0	0.03519	1	9630	9630		35.201	6.0512	1	431600	+		23225	24718	15976	16013	26883	26883					0.017562958829330455
HPHPVYLGAA	10	Unmodified	_HPHPVYLGAA_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.279983	1060.54541	0.39882	0.00021188	-0.59204	-0.00031454	-0.19322	-0.00010266	531.2791928008294	78.362	0.78111	78.17	77.683	78.464	-0.1921	-0.027552	-0.0004818	NaN	35.201	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388470	+		23226	24718	15976	16013							0.017562958829330455
HPHPVYLGAA	10	Unmodified	_HPHPVYLGAA_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.279983	1060.54541	-0.52286	-0.00027779	0.49612	0.00026358	-0.026744	-1.4208E-05	531.2796477380716	78.249	1.0804	78.265	77.863	78.943	0.015907	0.067817	0.00067443	NaN	35.201	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479600	+		23227	24718	15976	16013							0.017562958829330455
HPHPVYLGAA	10	Unmodified	_HPHPVYLGAA_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.279983	1060.54541	-0.3161	-0.00016794	0.22395	0.00011898	-0.092147	-4.8956E-05	531.2797467580289	78.445	0.55807	78.19	77.826	78.384	-0.25471	-0.0072122	0.00038524	NaN	35.201	18	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98527	+		23228	24718	15976	16013							0.017562958829330455
HPHPVYLGAA	10	Unmodified	_HPHPVYLGAA_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.279983	1060.54541	-0.096746	-5.1399E-05	-0.60706	-0.00032252	-0.7038	-0.00037392	531.2796028837125	78.351	0.55655	78.195	77.87	78.427	-0.15591	-0.0026543	-0.00049776	NaN	35.201	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298010	+		23229	24718	15976	16013							0.017562958829330455
HPHRDRHLLDV	11	Unmodified	_HPHRDRHLLDV_					0	0	0		ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.5854187011719	3	465.584848	1393.73271	-0.14602	-6.7983E-05	0.76583	0.00035656	0.61982	0.00028858	465.58529323943816	46.33	0.56934	46.33	46.09	46.659	0					54	15	5	0	0	0	1.0281	1	4577	4577		30.569	10.942	1	3938300			23230	17622	15977	16014	26884	26884					0.05159707420352788
HPHTLHILLHP	11	Unmodified	_HPHTLHILLHP_					0	0	0		ENST00000424419.6_1_1:41232377-41232629:+|nuORF	ENST00000424419.6_1_1:41232377-41232629:+|nuORF	ENST00000424419.6_1_1:41232377-41232629:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.5300598144531	3	438.919168	1313.73567	1.905	0.00083614	2.5142	0.0011036	4.4193	0.0019397	438.9201266927285	19.515	0.44596	19.282	19.077	19.523	-0.23345					15	8	3	0	0	0	0.024821	1	427	427		19.263	5.1767	1	44424			23231	14044	15978	16015	26885	26885					0.09135582545172838
HPIAWKEA	8	Unmodified	_HPIAWKEA_					0	0	0			REV__ENSG00000188636|ENST00000341255|RTL6	REV__ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.25396728515625	2	476.255977	950.497401	0.67915	0.00032345	-4.3169	-0.0020559	-3.6377	-0.0017325	476.25351209857524	22.273	0.93039	22.084	21.816	22.746	-0.18894					62	19	6	0	0	0	0.87148	1	778	778		53.351	2.016	1	1509600	+		23232	28048	15979	16016	26886	26886					0.02017221962887561
HPIAWKEA	8	Unmodified	_HPIAWKEA_					0	0	0			REV__ENSG00000188636|ENST00000341255|RTL6	REV__ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2538146972656	2	476.255977	950.497401	-0.59501	-0.00028338	-3.201	-0.0015245	-3.796	-0.0018079	476.2540748457312	22.402	0.87853	22.217	21.952	22.831	-0.18539					67	18	7	0	0	0	0.87148	2	784	784;797		53.351	3.3269	1	1568200	+		23233	28048	15979	16016	26887;26888	26887					0.02017221962887561
HPIAWKEA	8	Unmodified	_HPIAWKEA_					0	0	0			REV__ENSG00000188636|ENST00000341255|RTL6	REV__ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2537841796875	2	476.255977	950.497401	0.21387	0.00010185	-3.7206	-0.001772	-3.5067	-0.0016701	476.2536982686061	22.407	0.89087	22.205	21.903	22.793	-0.20199					77	18	8	0	0	0	0.95679	1	749	749		44.117	1.7207	1	1288400	+		23234	28048	15979	16016	26889	26889					0.02017221962887561
HPIHLFSAT	9	Unmodified	_HPIHLFSAT_					0	0	0			REV__nc|ENSG00000131480|O75106-2|AOC2	REV__nc|ENSG00000131480|O75106-2|AOC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.7954406738281	2	511.774534	1021.53451	-1.3054	-0.00066807	0.21216	0.00010858	-1.0932	-0.00055949	511.7722554946874	21.974	0.58175	22.045	21.781	22.362	0.071489					19	11	3	0	0	0	0.024535	1	672	672		33.516	5.6333	1	23075	+		23235	23216	15980	16017	26890	26890					0.024608935086462225
HPILEIPIN	9	Unmodified	_HPILEIPIN_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-2|CEP170	REV__nc|ENSG00000143702|Q5SW79-2|CEP170	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3065185546875	2	523.305667	1044.59678	0.14151	7.4053E-05	-4.128	-0.0021602	-3.9865	-0.0020861	523.3033649420273	100.12	1.0934	99.948	99.406	100.5	-0.17088					55	32	2	0	0	0	0.92825	1	12411	12411		30.504	2.6214	1	1144200	+		23236	24275	15981	16018	26891	26891					0.07626619857023798
HPIPKLVWSK	10	Unmodified	_HPIPKLVWSK_					0	0	0			REV__ENST00000533387.5_1_11:134130766-134134851:+|nuORF	REV__ENST00000533387.5_1_11:134130766-134134851:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.8113708496094	3	402.244881	1203.71281	-0.68171	-0.00027421	-2.4656	-0.00099177	-3.1473	-0.001266	402.24392387030116	28.63	0.25295	28.385	28.281	28.534	-0.24524					8	5	2	0	0	0	0.03519	1	1708	1708		9.2118	0	1	46206	+		23237	34601	15982	16019	26892	26892					0.11910563427682064
HPISKVRSV	9	Unmodified	_HPISKVRSV_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;nc|ENSG00000083307|Q6ISB3-2|GRHL2;C12orf52-GRHL2|1|fusion;ENST00000497403.5_1_2:10101229-10104576:+|nuORF;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	ENSG00000083307|ENST00000646743|GRHL2;ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.80859375	2	511.808908	1021.60326	0.35795	0.0001832	-0.73164	-0.00037446	-0.37369	-0.00019126	511.80842760641497	22.029	0.66449	21.84	21.482	22.147	-0.18894					32	13	3	0	0	0	0.82115	1	743	743		37.812	2.6108	1	615070			23238	1750;4781	15983	16020	26893	26893					0.09332557808386355
HPISKVRSV	9	Unmodified	_HPISKVRSV_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;nc|ENSG00000083307|Q6ISB3-2|GRHL2;C12orf52-GRHL2|1|fusion;ENST00000497403.5_1_2:10101229-10104576:+|nuORF;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	ENSG00000083307|ENST00000646743|GRHL2;ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.80865478515625	2	511.808908	1021.60326	-0.56884	-0.00029114	0.17321	8.8652E-05	-0.39563	-0.00020249	511.80887386620736	22.161	0.84537	21.975	21.569	22.415	-0.18539					38	17	4	0	0	0	0.70156	1	750	750		45.972	1.8554	1	601200			23239	1750;4781	15983	16020	26894	26894					0.09332557808386355
HPISKVRSV	9	Unmodified	_HPISKVRSV_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;nc|ENSG00000083307|Q6ISB3-2|GRHL2;C12orf52-GRHL2|1|fusion;ENST00000497403.5_1_2:10101229-10104576:+|nuORF;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	ENSG00000083307|ENST00000646743|GRHL2;ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENSG00000083307|ENST00000646743|GRHL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.8085021972656	2	511.808908	1021.60326	-0.27729	-0.00014192	-0.23644	-0.00012101	-0.51374	-0.00026294	511.80868268499574	22.177	0.90224	21.975	21.566	22.468	-0.20199					38	18	3	0	0	0	0.56934	2	736	736;751		54.776	10.66	1	538720			23240	1750;4781	15983	16020	26895;26896	26895					0.09332557808386355
HPISLLLKI	9	Unmodified	_HPISLLLKI_					0	0	0			REV__ENSG00000130227|ENST00000252512|XPO7	REV__ENSG00000130227|ENST00000252512|XPO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3052978515625	2	517.342052	1032.66955	0.2033	0.00010518	0.26074	0.00013489	0.46404	0.00024007	517.3420333455325	60.041	0.29283	59.865	59.667	59.96	-0.1761					13	7	3	0	0	0	0.024541	1	6682	6682		7.6903	0	1	287080	+		23241	23094	15984	16021	26897	26897					0.1545237365041885
HPISNNNSL	9	Unmodified	_HPISNNNSL_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.249267578125	2	498.24888	994.483208	-0.57251	-0.00028525	1.2399	0.00061778	0.6674	0.00033253	498.2493949766154	28.967	1.4142	28.97	28.337	29.751	0.0031376					76	34	3	0	0	0	0.091713	2	1719	1719;1732		113.41	8.665	1	1675500			23242	1130	15985	16022	26898;26899	26898					-0.014254752560418638
HPISNNNSL	9	Unmodified	_HPISNNNSL_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2486572265625	2	498.24888	994.483208	0.084276	4.1991E-05	0.31094	0.00015493	0.39522	0.00019692	498.2489412150176	28.648	1.2885	28.729	28.124	29.412	0.080811					72	31	3	0	0	0	0.072054	1	1633	1633		120.62	12.533	1	1596100			23243	1130	15985	16022	26900	26900					-0.014254752560418638
HPKAFLTTK	9	Unmodified	_HPKAFLTTK_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7647094726562	2	521.805834	1041.59712	-1.5424	-0.00080484	-0.88235	-0.00046041	-2.4248	-0.0012653	522.3071150582825	36.101	0.37665	36.101	35.886	36.263	0					15	10	2	0	0	0	0.024374	1	2823	2823		40.778	1.5253	1	123630			23244	2817	15986	16023	26901	26901					0.07798039576823612
HPKAKLVL	8	Unmodified	_HPKAKLVL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.30059814453125	2	453.300188	904.585822	-0.26304	-0.00011924	0.27488	0.0001246	0.011842	5.368E-06	453.30018513850666	27.981	1.418	27.736	27.42	28.838	-0.24524					72	33	4	0	0	0	0.40853	3	1591	1591;1602;1616		96.048	51.517	1	2734400			23245	3487	15987	16024	26902;26903;26904	26902					0.12971262273367756
HPKAKLVL	8	Unmodified	_HPKAKLVL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.3004455566406	2	453.300188	904.585822	-0.82064	-0.000372	0.85249	0.00038643	0.031848	1.4437E-05	453.3004463758212	27.776	1.4537	27.608	27.317	28.77	-0.16816					78	34	4	0	0	0	0.43637	2	1560	1560;1572		92.191	47.66	1	2537100			23246	3487	15987	16024	26905;26906	26905					0.12971262273367756
HPKAKLVL	8	Unmodified	_HPKAKLVL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.3006896972656	2	453.300188	904.585822	-0.32837	-0.00014885	0.36214	0.00016416	0.033773	1.5309E-05	453.30022300322014	28.006	1.1292	27.854	27.526	28.655	-0.15195					67	27	4	0	0	0	0.52467	4	1571	1561;1571;1583;1595		83.287	38.756	1	3416000			23247	3487	15987	16024	26907;26908;26909;26910	26908					0.12971262273367756
HPKENIIAV	9	Unmodified	_HPKENIIAV_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.79486083984375	2	510.795466	1019.57638	-0.29109	-0.00014869	-0.45159	-0.00023067	-0.74268	-0.00037936	510.7951387155288	37.863	0.79912	37.684	37.404	38.203	-0.17929					58	22	4	0	0	0	0.19099	2	3072	3072;3083		90.37	13.596	1	2753600			23248	10620	15988	16025	26911;26912	26911					0.06737449197191836
HPKENIIAV	9	Unmodified	_HPKENIIAV_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7952575683594	2	510.795466	1019.57638	-1.0422	-0.00053235	0.42688	0.00021805	-0.61531	-0.0003143	510.79555822628475	37.95	1.0312	37.728	37.427	38.458	-0.22149					66	28	4	0	0	0	0.26966	1	3078	3078		79.713	7.8351	1	2308100			23249	10620	15988	16025	26913	26913					0.06737449197191836
HPKENIIAV	9	Unmodified	_HPKENIIAV_					0	0	0		ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	ENST00000517754.1_1_8:26221160-26227926:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7946472167969	2	510.795466	1019.57638	-0.98865	-0.000505	0.3332	0.00017019	-0.65546	-0.0003348	510.79553242729725	37.956	0.94645	37.737	37.463	38.409	-0.21848					61	26	3	0	0	0	0.2508	1	3078	3078		82.241	13.756	1	2464000			23250	10620	15988	16025	26914	26914					0.06737449197191836
HPKETTRQL	9	Unmodified	_HPKETTRQL_					0	0	0		nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11	nc|ENSG00000015171|Q15326-5|ZMYND11	nc|ENSG00000015171|Q15326-5|ZMYND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.307373046875	2	555.306729	1108.59891	1.5041	0.00083522	-1.714	-0.00095178	-0.2099	-0.00011656	555.3057384677767	19.029	0.49364	19.029	18.823	19.317	0					22	9	3	0	0	0	0.72494	1	357	357		44.377	10.205	1	155170			23251	930	15989	16026	26915	26915					0.048950485947898414
HPKETTRQL	9	Unmodified	_HPKETTRQL_					0	0	0		nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11	nc|ENSG00000015171|Q15326-5|ZMYND11	nc|ENSG00000015171|Q15326-5|ZMYND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.3067016601562	2	555.306729	1108.59891	-0.329	-0.0001827	0.074124	4.1161E-05	-0.25488	-0.00014154	555.3067176430089	19.245	0.82813	19.126	18.903	19.731	-0.11872					28	16	3	0	0	0	0.67687	1	389	389		47.657	7.0847	1	165210			23252	930	15989	16026	26916	26916					0.048950485947898414
HPKINHNR	8	Unmodified	_HPKINHNR_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2823181152344	2	508.280849	1014.54715	0.23505	0.00011947	1.1807	0.00060015	1.4158	0.00071962	508.28165166513844	23.461	3.0777	23.259	22.178	25.256	-0.20193					186	69	6	0	0	0	0.97924	1	1022	1022		40.573	1.7665	1	45121000	+		23253	28304	15990	16027	26917	26917					0.04045349691557476
HPKRGGGL	8	Unmodified	_HPKRGGGL_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	411.2405090332031	2	411.240661	820.46677	2.3727	0.00097575	-1.7531	-0.00072093	0.61964	0.00025482	411.2397489364451	18.986	0.64213	18.986	18.724	19.366	0					29	12	3	0	0	0	1.0017	1	374	374		37.028	15.326	1	281650	+		23254	29221	15991	16028	26918	26918					0.0493548836852824
HPKRGGGL	8	Unmodified	_HPKRGGGL_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	411.24090576171875	2	411.240661	820.46677	0.44241	0.00018194	0.038091	1.5665E-05	0.4805	0.0001976	411.24053674803673	19.195	0.88437	19.077	18.756	19.64	-0.11872					32	17	3	0	0	0	0.98906	1	381	381		39.021	3.8208	1	310940	+		23255	29221	15991	16028	26919	26919					0.0493548836852824
HPKRSVSL	8	Unmodified	_HPKRSVSL_					0	0	0		nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2746887207031	2	462.274701	922.534849	0.23374	0.00010805	-0.5199	-0.00024034	-0.28616	-0.00013229	462.2743998982717	21.023	0.58064	20.846	20.484	21.065	-0.17721					28	11	3	0	0	0	0.74904	3	614	614;624;636		63.306	8.5416	1	1117400			23256	2597	15992	16029	26920;26921;26922	26920					0.07048313228528968
HPKRSVSL	8	Unmodified	_HPKRSVSL_					0	0	0		nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.27490234375	2	462.274701	922.534849	0.32382	0.0001497	-0.51439	-0.00023779	-0.19057	-8.8094E-05	462.27438369622	21.097	0.54057	20.902	20.632	21.172	-0.19577					35	10	4	0	0	0	0.91956	1	618	618		49.442	6.9671	1	929770			23257	2597	15992	16029	26923	26923					0.07048313228528968
HPKRSVSL	8	Unmodified	_HPKRSVSL_					0	0	0		nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2751770019531	2	462.274701	922.534849	-1.1229	-0.00051907	0.87479	0.00040439	-0.24807	-0.00011468	462.2750577946008	21.156	0.49393	20.944	20.673	21.167	-0.2128					26	9	3	0	0	0	0.71833	2	600	600;609		65.803	19.851	1	1003700			23258	2597	15992	16029	26924;26925	26924					0.07048313228528968
HPKRSVSL	8	Unmodified	_HPKRSVSL_					0	0	0		nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2750549316406	2	462.274701	922.534849	-1.0297	-0.00047602	0.56759	0.00026238	-0.46213	-0.00021363	462.2749027572938	21.651	1.1072	21.438	21.167	22.275	-0.2128					55	22	4	0	0	0	1.0574	1	636	636		23.042	0	1	1444500			23259	2597	15992	16029	26926	26926					0.07048313228528968
HPKTKKATSL	10	Unmodified	_HPKTKKATSL_					0	0	0			REV__ENSG00000197496|ENST00000359271|SLC2A10	REV__ENSG00000197496|ENST00000359271|SLC2A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.8375854492188	2	555.835123	1109.65569	-0.060099	-3.3405E-05	4.1476	0.0023054	4.0875	0.002272	555.8369335800946	106.39	0.67676	106.27	105.73	106.41	-0.1238					43	26	3	0	0	0	1.0992	1	13231	13231		32.812	2.3088	1	133600	+		23260	28310	15993	16030	26927	26927					0.10525096151332036
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2817077636719	2	508.282192	1014.54983	0.23505	0.00011947	-1.4608	-0.00074252	-1.2258	-0.00062305	508.28165166513844	23.461	3.0777	23.259	22.178	25.256	-0.20193					186	69	6	0	0	0	0.35998	8	934	922;934;946;958;970;982;1015;1033		102.77	38.566	1	45121000			23261	4275	15994	16031	26928;26929;26930;26931;26932;26933;26934;26935	26929					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.28216552734375	2	508.282192	1014.54983	-0.44192	-0.00022462	-0.64849	-0.00032962	-1.0904	-0.00055423	508.2820767122176	23.441	2.5705	23.261	22.375	24.945	-0.17989					117	58	3	0	0	0	0.30538	8	964	903;915;927;939;951;964;995;1006		110.34	36.501	1	56565000			23262	4275	15994	16031	26936;26937;26938;26939;26940;26941;26942;26943	26941					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.28173828125	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.323	1	23.132	22.632	23.632	-0.19117								0	0	0	0.33625	1	882	882		85.359	11.104	1				23263	4275	15994	16031	26944	26944					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.28204345703125	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.389	1	23.198	22.698	23.698	-0.19117								0	0	0	0.33625	1	891	891		85.359	11.104	1				23264	4275	15994	16031	26945	26945					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.2818603515625	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.466	1	23.275	22.775	23.775	-0.19117								0	0	0	0.33625	1	903	903		85.359	18.93	1				23265	4275	15994	16031	26946	26946					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.2819519042969	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.541	1	23.35	22.85	23.85	-0.19117								0	0	0	0.35942	1	915	915		97.473	26.177	1				23266	4275	15994	16031	26947	26947					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.28173828125	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.622	1	23.431	22.931	23.931	-0.19117								0	0	0	0.33625	1	927	927		85.359	18.93	1				23267	4275	15994	16031	26948	26948					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.28204345703125	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.71	1	23.519	23.019	24.019	-0.19117								0	0	0	0.38842	1	939	939		68.485	2.6815	1				23268	4275	15994	16031	26949	26949					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.2821044921875	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.801	1	23.61	23.11	24.11	-0.19117								0	0	0	0.38842	1	952	952		68.485	9.7027	1				23269	4275	15994	16031	26950	26950					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.2821350097656	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.987	1	23.806	23.306	24.306	-0.18089								0	0	0	0.3462	1	977	977		73.975	23.95	1				23270	4275	15994	16031	26951	26951					0.04313760305831238
HPKYKTEL	8	Unmodified	_HPKYKTEL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000128016|ENST00000597629|ZFP36;ENSG00000185650|ENST00000439696|ZFP36L1;ZFP36L2|p.G237Vfs*225|1|0.43|ENSG00000152518|chr2:43225094-43225095|-/CA|frameshift_variant;ZFP36L2|p.F214Lfs*260|1|0.58|ENSG00000152518|chr2:43225162-43225163|-/T|frameshift_variant;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.2818908691406	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.069	1	23.888	23.388	24.388	-0.18089								0	0	0	0.42824	1	988	988		63.306	17.354	1				23271	4275	15994	16031	26952	26952					0.04313760305831238
HPLATVWQ	8	Unmodified	_HPLATVWQ_					0	0	0			REV__ENSG00000198914|ENST00000361360|POU3F3	REV__ENSG00000198914|ENST00000361360|POU3F3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.25384521484375	2	476.255977	950.497401	0.67915	0.00032345	-4.3169	-0.0020559	-3.6377	-0.0017325	476.25351209857524	22.273	0.93039	22.084	21.816	22.746	-0.18894					62	19	6	0	0	0	0.87148	1	766	766		53.351	0	1	1509600	+		23272	28516	15995	16032	26953	26953					0.02017221962887561
HPLCSLAPR	9	Unmodified	_HPLCSLAPR_					0	0	0			REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2687683105469	2	497.268561	992.52257	-0.50113	-0.0002492	-0.17736	-8.8198E-05	-0.6785	-0.0003374	497.26841631396877	36.088	1.7988	36.088	35.687	37.486	0					141	48	4	0	0	0	0.72875	1	2783	2783		44.117	1.6423	1	12749000	+		23273	32669	15996	16033	26954	26954					0.026009534938225443
HPLCSLAPR	9	Unmodified	_HPLCSLAPR_					0	0	0			REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2682800292969	2	497.268561	992.52257	-0.95259	-0.0004737	0.14727	7.3233E-05	-0.80532	-0.00040046	497.26859640888404	35.147	1.0325	35.125	34.435	35.468	-0.021767					91	26	4	0	0	0	0.55828	1	2719	2719		55.504	6.0627	1	13428000	+		23274	32669	15996	16033	26955	26955					0.026009534938225443
HPLCSLAPR	9	Unmodified	_HPLCSLAPR_					0	0	0			REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.26861572265625	2	497.268561	992.52257	-0.95159	-0.0004732	0.31854	0.0001584	-0.63305	-0.0003148	497.2686713115808	35.956	3.1262	35.913	35.405	38.532	-0.042454					203	85	4	0	0	0	0.55828	3	2744	2744;2756;2829		55.504	3.205	1	11825000	+		23275	32669	15996	16033	26956;26957;26958	26956					0.026009534938225443
HPLCSLAPR	9	Unmodified	_HPLCSLAPR_					0	0	0			REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.268310546875	2	497.268561	992.52257	-0.33806	-0.00016811	-0.537	-0.00026703	-0.87506	-0.00043514	497.2682640817893	35.201	1.1879	35.245	34.512	35.699	0.04406					114	30	5	0	0	0	0.40179	3	2687	2638;2674;2687		65.803	5.4797	1	12692000	+		23276	32669	15996	16033	26959;26960;26961	26961					0.026009534938225443
HPLCSLAPR	9	Unmodified	_HPLCSLAPR_					0	0	0			REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	REV__ENST00000463145.2_3_20:2730128-2740700:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2684631347656	2	497.268561	992.52257	-0.35959	-0.00017881	-0.29125	-0.00014483	-0.65083	-0.00032364	497.26837861192877	36.109	3.0502	36.147	35.652	38.702	0.038044					198	83	4	0	0	0	0.40179	1	2771	2771		65.803	5.5092	1	12565000	+		23277	32669	15996	16033	26962	26962					0.026009534938225443
HPLEKKRR	8	Unmodified	_HPLEKKRR_					0	0	0		ENST00000378182.3_1_13:50571396-50571693:+|nuORF	ENST00000378182.3_1_13:50571396-50571693:+|nuORF	ENST00000378182.3_1_13:50571396-50571693:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3106079101562	2	532.327799	1062.64105	-0.58605	-0.00031197	1.8911	0.0010067	1.3051	0.00069473	532.3287642582193	35.49	0.24108	35.275	35.216	35.457	-0.21555					9	5	2	0	0	0	0.027866	1	2692	2692		42.474	18.272	1	124040			23278	13231	15997	16034	26963	26963					0.11223068793856328
HPLEKKRR	8	Unmodified	_HPLEKKRR_					0	0	0		ENST00000378182.3_1_13:50571396-50571693:+|nuORF	ENST00000378182.3_1_13:50571396-50571693:+|nuORF	ENST00000378182.3_1_13:50571396-50571693:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3111572265625	2	532.327799	1062.64105	-0.86152	-0.00045861	3.6987	0.0019689	2.8372	0.0015103	532.3296957474645	35.506	0.31904	35.293	35.115	35.434	-0.21246					10	7	2	0	0	0	0.027866	1	2716	2716		50.025	5.6474	1	91880			23279	13231	15997	16034	26964	26964					0.11223068793856328
HPLHQALIS	9	Unmodified	_HPLHQALIS_					0	0	0			REV__ENST00000483061.1_1_2:224777012-224810044:-|nuORF	REV__ENST00000483061.1_1_2:224777012-224810044:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2867736816406	2	508.287808	1014.56106	-0.18795	-9.553E-05	-0.067283	-3.4199E-05	-0.25523	-0.00012973	508.28757757474756	52.773	1.1675	52.584	52.227	53.395	-0.18982					49	29	2	0	0	0	0.4855	1	5496	5496		60.294	6.9425	1	1894400	+		23280	33501	15998	16035	26965	26965					0.05436582400000134
HPLLRHIIIP	10	Unmodified	_HPLLRHIIIP_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5920715332031	3	403.592392	1207.75535	-0.0046254	-1.8668E-06	-0.070544	-2.8471E-05	-0.075169	-3.0338E-05	403.5923711949745	38.108	1.3027	37.929	37.443	38.746	-0.17929					97	31	5	0	0	0	1.1088	2	3096	3096;3107		31.53	4.7036	1	10622000	+		23281	23532	15999	16036	26966;26967	26966					0.1597795855593631
HPLLRHIIIP	10	Unmodified	_HPLLRHIIIP_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5922546386719	3	403.592392	1207.75535	0.067703	2.7325E-05	-0.21215	-8.5623E-05	-0.14445	-5.8298E-05	403.59230002804907	38.13	1.7655	37.908	37.309	39.074	-0.22149					113	41	4	0	0	0	1.0616	2	3090	3090;3112		37.812	0.99649	1	8888900	+		23282	23532	15999	16036	26968;26969	26968					0.1597795855593631
HPLPCLWAPE	10	Unmodified	_HPLPCLWAPE_					0	0	0			REV__ENST00000505306.5_1_17:48167535-48167679:+|nuORF	REV__ENST00000505306.5_1_17:48167535-48167679:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	581.8220825195312	2	581.789327	1161.5641	-1.0813	-0.00062911	2.7492	0.0015994	1.6679	0.00097034	581.7909050578926	64.404	0.63336	64.404	64.203	64.836	0					21	16	2	0	0	0	0.03519	1	7633	7633		29.15	2.3535	1	176190	+		23283	34008	16000	16037	26970	26970					-0.010219105375199433
HPLPHPPRP	9	Unmodified	_HPLPHPPRP_					0	0	0			REV__ENST00000379613.7_1_6:10398366-10398585:-|nuORF	REV__ENST00000379613.7_1_6:10398366-10398585:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7611083984375	2	524.295968	1046.57738	0.285	0.00014943	-2.777	-0.001456	-2.492	-0.0013066	524.2937998463472	60.104	0.6526	59.906	59.651	60.303	-0.19742					24	16	2	0	0	0	0.024517	1	6666	6666		26.796	3.2734	1	225730	+		23284	31439	16001	16038	26971	26971					0.055957083567591326
HPLPVQVPT	9	Unmodified	_HPLPVQVPT_					0	0	0			REV__ENSG00000150907|ENST00000379561|FOXO1	REV__ENSG00000150907|ENST00000379561|FOXO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.26666259765625	2	494.284734	986.554916	-0.40137	-0.00019839	4.3093	0.00213	3.9079	0.0019316	494.28761330948953	48.852	0.25383	48.7	48.575	48.829	-0.15277					10	6	3	0	0	0	0.024354	1	4995	4995		38.806	0	1	111710	+		23285	24739	16002	16039	26972	26972					0.06110064168478857
HPLQFGFRQRL	11	Unmodified	_HPLQFGFRQRL_					0	0	0			REV__ENST00000416600.6_1_20:3846925-3847768:+|nuORF	REV__ENST00000416600.6_1_20:3846925-3847768:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.9280700683594	3	466.929955	1397.76804	-0.74627	-0.00034846	-3.5756	-0.0016696	-4.3219	-0.002018	466.92828320915055	24.071	0.79185	24.024	23.741	24.533	-0.047148					49	17	4	0	0	0	0.99689	1	1006	1006		37.508	3.4217	1	1930600	+		23286	32080	16003	16040	26973	26973					0.08506369948167958
HPLSRAEAA	9	Unmodified	_HPLSRAEAA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.25433349609375	2	476.253966	950.493378	0.67915	0.00032345	-0.093563	-4.456E-05	0.58559	0.00027889	476.25351209857524	22.273	0.93039	22.084	21.816	22.746	-0.18894					62	19	6	0	0	0	0.72494	1	791	791		44.377	0.75114	1	1509600			23287	5547	16004	16041	26974	26974					0.016151324691804803
HPLSRAEAA	9	Unmodified	_HPLSRAEAA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.25390625	2	476.253966	950.493378	-0.59502	-0.00028338	1.0223	0.00048686	0.42726	0.00020348	476.2540748457312	22.402	0.87853	22.217	21.952	22.831	-0.18539					67	18	7	0	0	0	0.67687	1	772	772		47.657	7.0847	1	1568200			23288	5547	16004	16041	26975	26975					0.016151324691804803
HPLSRKGT	8	Unmodified	_HPLSRKGT_					0	0	0		ENST00000396987.7_1_8:41478885-41479125:+|nuORF	ENST00000396987.7_1_8:41478885-41479125:+|nuORF	ENST00000396987.7_1_8:41478885-41479125:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.25860595703125	2	448.259051	894.503549	-0.45696	-0.00020483	0.23802	0.00010669	-0.21894	-9.814E-05	448.25902243845417	89.198	2.2068	89.035	88.471	90.677	-0.1626					108	52	4	0	0	0	1.043	1	10942	10942		30.504	3.8107	1	9232100			23289	13570	16005	16042	26976	26976					0.05207740194430244
HPMEDEEEL	9	Unmodified	_HPMEDEEEL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2591552734375	2	564.729329	1127.4441	-0.34211	-0.0001932	0.27828	0.00015715	-0.063836	-3.605E-05	564.72953135922	27.366	0.80863	27.124	26.701	27.509	-0.24217					43	18	4	0	0	0	0.024487	1	1519	1519		24.203	1.1603	1	480980	+		23290	27391	16006	16043	26977	26977					-0.1145198839258228
HPNLVRDH	8	Unmodified	_HPNLVRDH_					0	0	0		ENSG00000163060|ENST00000295201|TEKT4;ENST00000468063.1_1_2:95537336-95538738:+|nuORF	ENSG00000163060|ENST00000295201|TEKT4	ENSG00000163060|ENST00000295201|TEKT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2931213378906	2	494.259582	986.504612	1.052	0.00051995	1.4131	0.00069843	2.4651	0.0012184	494.2600644755307	19.278	0.76108	19.278	19.07	19.831	0					22	15	2	0	0	0	0.027866	1	421	421		52.299	9.903	1	48994			23291	7029	16007	16044	26978	26978					0.010819545633239613
HPPAPMQPI	9	Oxidation (M)	_HPPAPM(Oxidation (M))QPI_		HPPAPM(1)QPI		HPPAPM(41)QPI	0	0	1			REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2578430175781	2	502.25512	1002.49569	1.6835	0.00084554	3.5642	0.0017901	5.2477	0.0026357	502.2568253280914	24.125	0.91958	23.944	23.671	24.59	-0.18089					41	20	3	0	0	0	0.78069	1	1003	1003		40.573	10.069	1	617080	+		23292	24240	16008	16045	26979	26979		719			-0.005461551173652879
HPPGYVAPR	9	Unmodified	_HPPGYVAPR_					0	0	0		ENST00000478619.1_1_3:50374443-50374560:-|nuORF	ENST00000478619.1_1_3:50374443-50374560:-|nuORF	ENST00000478619.1_1_3:50374443-50374560:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2681579589844	2	497.266876	992.519199	-0.9526	-0.0004737	3.5366	0.0017586	2.584	0.0012849	497.26859640888404	35.147	1.0325	35.125	34.435	35.468	-0.021767					91	26	4	0	0	0	0.64155	1	2695	2695		50.025	2.3672	1	13428000			23293	15151	16009	16046	26980	26980					0.022640267114638846
HPPGYVAPR	9	Unmodified	_HPPGYVAPR_					0	0	0		ENST00000478619.1_1_3:50374443-50374560:-|nuORF	ENST00000478619.1_1_3:50374443-50374560:-|nuORF	ENST00000478619.1_1_3:50374443-50374560:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2682189941406	2	497.266876	992.519199	-0.9516	-0.0004732	3.7079	0.0018438	2.7563	0.0013706	497.2686713115808	35.956	3.1262	35.913	35.405	38.532	-0.042454					203	85	4	0	0	0	0.33184	1	2791	2791		71.378	2.5911	1	11825000			23294	15151	16009	16046	26981	26981					0.022640267114638846
HPPPQKVK	8	Unmodified	_HPPPQKVK_					0	0	0			REV__ENST00000470609.5_1_17:48585906-48599496:+|nuORF	REV__ENST00000470609.5_1_17:48585906-48599496:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.777587890625	2	465.779619	929.544686	-0.62433	-0.0002908	-3.3212	-0.001547	-3.9455	-0.0018377	465.7780123363889	94.333	1.1034	94.195	93.834	94.937	-0.13779					55	25	3	0	0	0	0.95417	1	11633	11633		44.531	12.576	1	803130	+		23295	33159	16010	16047	26982	26982					0.07709501233898663
HPQIMLSFL	9	Unmodified	_HPQIMLSFL_					0	0	0			REV__ENST00000475582.5_1_2:27590663-27590978:-|nuORF	REV__ENST00000475582.5_1_2:27590663-27590978:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.7999267578125	2	543.294245	1084.57394	-0.042985	-2.3354E-05	-0.26246	-0.00014259	-0.30545	-0.00016595	543.2941360986251	72.586	0.59575	72.321	72.042	72.638	-0.26479					25	13	2	0	0	0	0.59099	1	8493	8493		53.351	9.2347	1	2194400	+		23296	33295	16011	16048	26983	26983					0.0350327746784842
HPQKKGYFL	9	Unmodified	_HPQKKGYFL_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.3143310546875	2	559.311284	1116.60801	0.15894	8.8897E-05	3.5033	0.0019595	3.6623	0.0020484	559.3121756234218	103.91	1.3852	103.78	102.9	104.29	-0.12561					47	34	2	0	0	0	0.88411	1	12943	12943		33.516	4.366	1	122930	+		23297	34459	16012	16049	26984	26984					0.05437441951130495
HPQSNLCQPHE	11	Unmodified	_HPQSNLCQPHE_					0	0	0			REV__nc|ENSG00000131042|Q8N423-3|LILRB2	REV__nc|ENSG00000131042|Q8N423-3|LILRB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.53021240234375	3	430.527899	1288.56187	2.1601	0.00092998	3.0268	0.0013031	5.1869	0.0022331	430.5293999846609	23.518	1.4168	23.327	23.034	24.451	-0.19117					102	32	6	0	0	0	0.96926	1	928	928		43.651	0.23225	1	5197400	+		23298	23182	16013	16050	26985	26985					-0.07086991013261468
HPRAKVTL	8	Unmodified	_HPRAKVTL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1;ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.2849426269531	2	461.285069	920.555585	-0.40828	-0.00018833	0.25624	0.0001182	-0.15203	-7.013E-05	461.28507840937493	23.315	0.50689	23.135	22.929	23.436	-0.17989					25	11	3	0	0	0	0.74904	2	899	899;913		63.306	0	1	1271300			23299	1927	16014	16051	26986;26987	26986					0.09212903608181477
HPRAKVTL	8	Unmodified	_HPRAKVTL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1;ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.2849426269531	2	461.285069	920.555585	1.7419	0.00080351	-2.004	-0.0009244	-0.26206	-0.00012088	461.2839828733853	23.337	0.76374	23.146	22.897	23.66	-0.19117					33	17	3	0	0	0	0.6248	1	880	880		73.975	8.1716	1	1249400			23300	1927	16014	16051	26988	26988					0.09212903608181477
HPRAKVTL	8	Unmodified	_HPRAKVTL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1;ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	461.285069	920.555585	-0.22031	-0.00010162	-0.21514	-9.9239E-05	-0.43544	-0.00020086	461.28491522329006	22.882	0.22676	22.821	22.709	22.935	-0.060862	-0.23668	0.00029984	NaN	73.975	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29130			23301	1927	16014	16051							0.09212903608181477
HPRAVLVFGEL	11	Unmodified	_HPRAVLVFGEL_					0	0	0		ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENST00000358079.8_1_22:29924947-29938918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.88116455078125	3	413.239907	1236.69789	-0.10926	-4.515E-05	0.4315	0.00017831	0.32225	0.00013317	413.2400906587684	29.201	0.42788	29.051	28.826	29.254	-0.14952					16	9	2	0	0	0	0.024759	1	1726	1726		17.833	3.1395	1	46073			23302	12711	16015	16052	26989	26989					0.08901071559716911
HPREPALGP	9	Unmodified	_HPREPALGP_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2635498046875	2	487.264333	972.514114	-1.0934	-0.00053276	-0.11974	-5.8347E-05	-1.2131	-0.00059111	487.2643893780516	30.448	1.037	30.522	30.296	31.333	0.074314					35	24	2	0	0	0	0.14024	1	1898	1898		101.6	40.629	1	2262700			23303	6896	16016	16053	26990	26990					0.02675722848857731
HPRGPEKSP	9	Unmodified	_HPRGPEKSP_					0	0	0		ENST00000356387.6_1_7:102089428-102089692:+|nuORF	ENST00000356387.6_1_7:102089428-102089692:+|nuORF	ENST00000356387.6_1_7:102089428-102089692:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.284423828125	2	502.76724	1003.51993	1.0005	0.00050301	1.328	0.00066768	2.3285	0.0011707	503.26872826233136	97.655	0.31664	97.531	97.327	97.643	-0.12368					9	6	2	0	0	0	0.024292	1	12092	12092		49.442	0	1	21371			23304	12668	16017	16054	26991	26991					0.018308213605109813
HPRKVAIT	8	Unmodified	_HPRKVAIT_					0	0	0		ENST00000415894.1_1_1:165788676-165788994:+|nuORF	ENST00000415894.1_1_1:165788676-165788994:+|nuORF	ENST00000415894.1_1_1:165788676-165788994:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.2850341796875	2	461.285069	920.555585	0.26681	0.00012308	-0.52827	-0.00024368	-0.26146	-0.00012061	461.2846517265809	23.332	0.92029	23.13	22.826	23.747	-0.20193					43	20	3	0	0	0	0.74904	1	917	917		63.306	0	1	1114000			23305	13889	16018	16055	26992	26992					0.0921290360815874
HPRLSRLPL	9	Unmodified	_HPRLSRLPL_					0	0	0		ENST00000376730.4_1_9:79074163-79115838:+|nuORF	ENST00000376730.4_1_9:79074163-79115838:+|nuORF	ENST00000376730.4_1_9:79074163-79115838:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3163452148438	2	544.838	1087.66145	-0.57216	-0.00031173	-3.6567	-0.0019923	-4.2289	-0.0023041	545.3360922432641	101.07	0.38256	101.07	100.99	101.37	0					10	8	2	0	0	0	0.024477	1	12975	12975		20.947	0	1	30570			23306	13189	16019	16056	26993	26993					0.12112239453654183
HPRPLVKLL	9	Unmodified	_HPRPLVKLL_					0	0	0		nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7977294921875	2	536.853119	1071.69168	-0.75819	-0.00040704	1.274	0.00068395	0.51581	0.00027692	536.8547764738638	66.024	0.30878	66.054	65.812	66.121	0.030098					11	7	2	0	0	0	0.024436	1	7751	7751		47.916	15.961	1	85747			23307	878	16020	16057	26994	26994					0.158705981188632
HPRPPIPLSL	10	Unmodified	_HPRPPIPLSL_					0	0	0		ENST00000568126.5_1_16:19775348-19800271:+|nuORF;ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8407592773438	2	563.840208	1125.66586	-0.2027	-0.00011429	0.47869	0.0002699	0.27599	0.00015561	563.8403318397844	57.986	0.99948	57.986	57.68	58.679	0					59	26	3	0	0	0	0.50517	2	6539	6539;6556		87.696	25.589	1	2627000			23308	8487	16021	16058	26995;26996	26995					0.10805703876576445
HPRPPTQKP	9	Unmodified	_HPRPPTQKP_					0	0	0		ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant	ENSG00000168056|ENST00000301873|LTBP3	ENSG00000168056|ENST00000301873|LTBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2979125976562	2	529.298707	1056.58286	-1.6642	-0.00088083	-0.10945	-5.7931E-05	-1.7736	-0.00093876	529.2982410615775	30.844	0.96046	30.844	30.508	31.469	0					44	22	3	0	0	0	0.39228	1	2006	2006		66.429	0.6261	1	2370900			23309	7777	16022	16059	26997	26997					0.056833871485423515
HPRPTSQDL	9	Unmodified	_HPRPTSQDL_					0	0	0		nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.7697143554688	2	525.76998	1049.52541	-1.1736	-0.00061706	1.4693	0.00077251	0.29568	0.00015546	525.7706913695514	25.255	0.64534	25.221	25.037	25.682	-0.034395					43	15	4	0	0	0	0.34489	1	1169	1169		69.628	9.3337	1	1428000			23310	18507	16023	16060	26998	26998					0.0026250015232562873
HPRPTSQDL	9	Unmodified	_HPRPTSQDL_					0	0	0		nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7700805664062	2	525.76998	1049.52541	0.35074	0.00018441	-0.10373	-5.454E-05	0.24701	0.00012987	525.7698680917842	25.114	0.74506	25.195	24.961	25.706	0.08009					48	17	4	0	0	0	0.34489	2	1118	1106;1118		69.628	25.511	1	1572500			23311	18507	16023	16060	26999;27000	27000					0.0026250015232562873
HPRPTSQDL	9	Unmodified	_HPRPTSQDL_					0	0	0		nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	525.76998	1049.52541	-1.4327	-0.00075327	1.8163	0.00095497	0.38364	0.00020171	525.7707997823744	25.232	0.64709	25.232	24.964	25.611	0	0.015928	0.00095027	NaN	69.628	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1596600			23312	18507	16023	16060							0.0026250015232562873
HPRSGEEP	8	Unmodified	_HPRSGEEP_					0	0	0			REV__ENST00000554577.5_1_14:24801472-24801562:-|nuORF	REV__ENST00000554577.5_1_14:24801472-24801562:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7146301269531	2	454.714673	907.414794	-0.12717	-5.7825E-05	0.35067	0.00015945	0.2235	0.00010163	454.71466838126304	22.792	0.67891	22.717	22.458	23.137	-0.075296					36	14	4	0	0	0	0.74904	1	833	833		63.306	0	1	836750	+		23313	34993	16024	16061	27001	27001					-0.04261719835903932
HPRSPTPTL	9	Unmodified	_HPRSPTPTL_					0	0	0		ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2776184082031	2	503.277441	1004.54033	-0.85538	-0.00043049	-0.24276	-0.00012218	-1.0981	-0.00055267	503.2772507619674	31.161	1.5611	31.161	30.508	32.07	0					116	37	4	0	0	0	0.096521	4	2030	2030;2041;2051;2063		111.65	29.343	1	4924600			23314	1385	16025	16062	27002;27003;27004;27005	27002					0.03823992020318201
HPRSPTPTL	9	Unmodified	_HPRSPTPTL_					0	0	0		ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.27728271484375	2	503.277441	1004.54033	-0.43029	-0.00021655	-0.60713	-0.00030555	-1.0374	-0.00052211	503.27707125935103	31.076	1.6446	31.088	30.499	32.144	0.011797					105	39	3	0	0	0	0.12602	3	2035	2014;2024;2035		104.75	27.972	1	5091000			23315	1385	16025	16062	27006;27007;27008	27008					0.03823992020318201
HPRSPTPTL	9	Unmodified	_HPRSPTPTL_					0	0	0		ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.2772216796875	2	503.277441	1004.54033	-0.30247	-0.00015223	-0.77309	-0.00038908	-1.0756	-0.0005413	503.27698209502734	30.852	1.5948	30.926	30.378	31.973	0.074316					112	38	4	0	0	0	0.096521	4	1954	1943;1954;1966;1979		111.65	32.224	1	4893600			23316	1385	16025	16062	27009;27010;27011;27012	27010					0.03823992020318201
HPRSPTPTL	9	Unmodified	_HPRSPTPTL_					0	0	0		ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.277441	1004.54033	-0.51732	-0.00026035	-5.7516	-0.0028946	-6.2689	-0.003155	503.2746969342944	31.178	0.19957	31.025	30.846	31.045	-0.15231	-0.024762	-0.0052328	NaN	111.65	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72055			23317	1385	16025	16062							0.03823992020318201
HPSCWVSCD	9	Unmodified	_HPSCWVSCD_					0	0	0		GNAZ|p.G112Afs*46|1|0.33|ENSG00000128266|chr22:23096028-23096028|G/-|frameshift_variant	GNAZ|p.G112Afs*46|1|0.33|ENSG00000128266|chr22:23096028-23096028|G/-|frameshift_variant	GNAZ|p.G112Afs*46|1|0.33|ENSG00000128266|chr22:23096028-23096028|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.22119140625	2	517.196945	1032.37934	-0.97111	-0.00050226	4.2013	0.0021729	3.2302	0.0016707	517.1994814555402	36.077	0.20535	36.115	35.927	36.133	0.038044					7	5	2	0	0	0	0.024381	1	2773	2773		37.159	0	1	40840			23318	17682	16026	16063	27013	27013					-0.1355584167959023
HPSGATPTL	9	Unmodified	_HPSGATPTL_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.73028564453125	2	440.729792	879.445031	0.10807	4.7631E-05	0.11304	4.9818E-05	0.22111	9.7449E-05	440.7296716712808	34.319	0.93396	34.314	33.988	34.922	-0.0045624					45	23	3	0	0	0	0.17455	1	2555	2555		94.006	27.577	1	1743100			23319	1130	16027	16064	27014	27014					0.00048638829287028784
HPSPVLLPVP	10	Unmodified	_HPSPVLLPVP_					0	0	0		ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.3294067382812	2	528.316035	1054.61752	-0.097141	-5.1321E-05	3.2263	0.0017045	3.1292	0.0016532	528.317543756209	77.836	0.80656	77.674	77.484	78.291	-0.16196					49	18	4	0	0	0	0.03519	1	9249	9249		45.952	8.7928	1	1241400			23320	17105	16028	16065	27015	27015					0.09239210236682993
HPSRGLGVQG	10	Unmodified	_HPSRGLGVQG_					0	0	0		ENST00000550528.5_1_12:58133675-58140075:+|nuORF	ENST00000550528.5_1_12:58133675-58140075:+|nuORF	ENST00000550528.5_1_12:58133675-58140075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2727355957031	2	504.27269	1006.53083	0.8874	0.00044749	-1.1055	-0.00055747	-0.2181	-0.00010998	504.27203346022634	20.304	0.77813	20.108	19.755	20.533	-0.19577					39	15	4	0	0	0	1.0616	1	528	528		37.812	0.65241	1	639180			23321	16584	16029	16066	27016	27016					0.027822237348118506
HPSRGPVSSQ	10	Unmodified	_HPSRGPVSSQ_					0	0	0		ENST00000607222.1_1_1:1549960-1550044:-|nuORF	ENST00000607222.1_1_1:1549960-1550044:-|nuORF	ENST00000607222.1_1_1:1549960-1550044:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.26708984375	2	526.267604	1050.52066	-1.1287	-0.00059399	0.74634	0.00039277	-0.38234	-0.00020121	526.2679043943546	22.268	0.88308	22.268	21.965	22.848	0					53	18	4	0	0	0	0.83673	1	789	789		58.23	10.573	1	863970			23322	17575	16030	16067	27017	27017					-0.002583839904218621
HPSRVEIL	8	Unmodified	_HPSRVEIL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2539367675781	2	475.774534	949.534515	0.054198	2.5786E-05	1.3105	0.0006235	1.3647	0.00064928	475.7749087166122	27.359	0.46893	27.346	27.067	27.536	-0.012983					20	12	2	0	0	0	0.027866	1	1435	1435		20.482	0	1	113150	+		23323	25812	16031	16068	27018	27018					0.05772893508674315
HPTARAAGT	9	Unmodified	_HPTARAAGT_					0	0	0			REV__ENST00000569796.1_1_16:2284558-2285107:+|nuORF	REV__ENST00000569796.1_1_16:2284558-2285107:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.85369873046875	2	441.233033	880.451513	0.017267	7.6186E-06	4.3157	0.0019042	4.3329	0.0019118	441.23498405226746	31.427	1.018	31.274	30.597	31.615	-0.15231					30	25	2	0	0	0	0.024427	1	2107	2107		26.693	0	1	120670	+		23324	35376	16032	16069	27019	27019					0.006505767806629592
HPTLRAICN	9	Unmodified	_HPTLRAICN_					0	0	0		ZNF462-RAD23B|1|fusion;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462;ENST00000497489.5_1_9:109691986-109693263:+|nuORF	ZNF462-RAD23B|1|fusion	ZNF462-RAD23B|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.8083190917969	2	512.771468	1023.52838	-0.11549	-5.9219E-05	-2.8099	-0.0014408	-2.9254	-0.0015	512.7694356808707	22.294	0.3383	22.092	21.855	22.194	-0.20199					8	6	2	0	0	0	0.024397	1	727	727		47.657	0	1	11510			23325	38192	16033	16070	27020	27020					0.017560520054757944
HPTLVAEALF	10	Unmodified	_HPTLVAEALF_					0	0	0		nc|ENSG00000133107|Q9UBN4-6|TRPC4;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3030395507812	2	549.303124	1096.5917	0.15773	8.6641E-05	-0.30673	-0.00016849	-0.14901	-8.1849E-05	549.3028459741538	78.773	1.2201	78.541	78.303	79.523	-0.23141					58	28	5	0	0	0	1.0142	1	9426	9426		44.117	1.2525	1	1771100			23326	4683	16034	16071	27021	27021					0.04726315994344077
HPTRSGSRA	9	Unmodified	_HPTRSGSRA_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.758056640625	2	484.754664	967.494775	4.9567	0.0024028	2.7658	0.0013407	7.7226	0.0037435	484.75587473030123	17.18	0.32546	17.24	17.104	17.429	0.06036					15	10	2	0	0	0	1.0233	1	120	120		15.642	1.8665	1	47413			23327	4223	16035	16072	27022	27022					0.009727665579589484
HPVEHLLVT	9	Unmodified	_HPVEHLLVT_					0	0	0			REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2797241210938	2	522.795466	1043.57638	-0.048676	-2.5447E-05	-3.1358	-0.0016394	-3.1845	-0.0016648	522.7935766556337	59.553	0.37182	59.638	59.426	59.798	0.085682					15	9	2	0	0	0	0.024381	1	6746	6746		45.952	3.0877	1	208700	+		23328	22005	16036	16073	27023	27023					0.056334491971938405
HPVRSISL	8	Unmodified	_HPVRSISL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7146911621094	2	454.769252	907.52395	0.060411	2.7473E-05	0.43002	0.00019556	0.49043	0.00022303	454.76920319504814	23.312	0.84811	23.312	22.803	23.651	0					28	19	2	0	0	0	0.027866	1	836	836		60.972	3.1607	1	134690	+		23329	37247	16037	16074	27024	27024					0.06648910854232781
HPVRSISL	8	Unmodified	_HPVRSISL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.769252	907.52395	-0.34616	-0.00015742	0.12249	5.5705E-05	-0.22367	-0.00010172	454.76918818579406	23.293	0.40178	23.232	23.026	23.428	-0.060862	-0.043694	4.4379E-05	NaN	60.972	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161410	+		23330	37247	16037	16074							0.06648910854232781
HPVRSISL	8	Unmodified	_HPVRSISL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	454.769252	907.52395	-0.28972	-0.00013176	-0.25179	-0.00011451	-0.54151	-0.00024626	454.76900115280813	23.207	0.49062	23.283	23.07	23.561	0.076239	0.0074006	-0.00029604	NaN	60.972	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199880	+		23331	37247	16037	16074							0.06648910854232781
HPWIFLLA	8	Unmodified	_HPWIFLLA_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3;nc|ENSG00000182077|Q3KNS1-2|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7693176269531	2	498.786913	995.559273	0.12489	6.2292E-05	2.8353	0.0014142	2.9601	0.0014765	498.7881963807563	19.665	0.29579	19.504	19.331	19.627	-0.16079					9	5	2	0	0	0	0.027866	1	440	440		24.504	5.144	1	53640			23332	18566	16038	16075	27025	27025					0.06131573382026545
HPWILLLKV	9	Unmodified	_HPWILLLKV_					0	0	0		nc|ENSG00000181355|Q8IZS5|OFCC1;nc|ENSG00000181355|Q8IZS5-2|OFCC1	nc|ENSG00000181355|Q8IZS5|OFCC1	nc|ENSG00000181355|Q8IZS5|OFCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.81591796875	2	559.85787	1117.70119	0.021794	1.2202E-05	2.5804	0.0014446	2.6021	0.0014568	559.8593093620137	80.946	0.43925	80.708	80.49	80.93	-0.23784					14	10	2	0	0	0	0.024541	1	9721	9721		16.473	3.514	1	83481			23333	18565	16039	16076	27026	27026					0.1470436640436219
HPWLMQTN	8	Unmodified	_HPWLMQTN_					0	0	0			REV__ENST00000395080.7_1_4:88898090-88901237:+|nuORF	REV__ENST00000395080.7_1_4:88898090-88901237:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2962646484375	2	513.744919	1025.47529	0.39103	0.00020089	1.2882	0.00066183	1.6793	0.00086271	513.7452756335374	86.321	2.4096	86.321	85.123	87.532	0					96	56	2	0	0	0	0.027866	1	10734	10734		30.504	0	1	182230	+		23334	31687	16040	16077	27027	27027					-0.03643325777170503
HPWTRSTDHT	10	Unmodified	_HPWTRSTDHT_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.1947326660156	3	413.195138	1236.56358	1.7502	0.00072316	-1.7546	-0.00072497	-0.0043848	-1.8118E-06	413.1942886782097	23.23	1.1745	23.039	22.664	23.838	-0.19117					53	26	4	0	0	0	1.0545	1	867	867		38.754	0.039523	1	1253400			23335	11087	16041	16078	27028	27028					-0.0452361393299725
HPYGKSHL	8	Unmodified	_HPYGKSHL_					0	0	0		ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	469.745849609375	2	469.745776	937.477	1.0932	0.00051354	-1.1168	-0.00052461	-0.023553	-1.1064E-05	469.7450797829427	19.779	0.4917	19.579	19.405	19.897	-0.2001					24	9	4	0	0	0	0.89627	1	468	468		51.335	12.529	1	321060			23336	9275	16042	16079	27029	27029					0.005760513030963921
HPYKEEESI	9	Unmodified	_HPYKEEESI_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.272216796875	2	566.269478	1130.5244	0.87131	0.0004934	3.3998	0.0019252	4.2711	0.0024186	566.2715526789525	96.24	2.3967	96.117	95.378	97.775	-0.12305					84	54	3	0	0	0	0.26966	1	11893	11893		79.713	2.866	1	889540			23337	10204	16043	16080	27030	27030					-0.03563759007238332
HPYPKNVL	8	Unmodified	_HPYPKNVL_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;nc|ENSG00000048342|Q9P2K1-2|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.2737121582031	2	484.271627	966.528701	-0.25179	-0.00012194	-1.3962	-0.00067612	-1.648	-0.00079806	484.2708952912871	34.493	0.40317	34.286	34.082	34.485	-0.20695					23	9	3	0	0	0	0.027866	1	2535	2535		62.978	7.4742	1	570480			23338	1114	16044	16081	27031	27031					0.04409794996979599
HPYYTLQV	8	Unmodified	_HPYYTLQV_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7872619628906	2	510.761092	1019.50763	-0.45405	-0.00023191	-3.4262	-0.00175	-3.8802	-0.0019819	510.75992741121894	60.32	0.51479	60.32	60.104	60.619	0					17	13	2	0	0	0	0.027866	1	6926	6926		50.025	17.212	1	76122	+		23339	26292	16045	16082	27032	27032					-0.001342151025255589
HQAAIVSKI	9	Unmodified	_HQAAIVSKI_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7901611328125	2	483.790184	965.565815	-0.62162	-0.00030073	-0.056615	-2.739E-05	-0.67823	-0.00032812	483.7900166996892	33.143	0.76253	33.143	32.827	33.59	0					58	20	4	0	0	0	0.16539	1	2379	2379		96.034	21.779	1	2862100			23340	3944	16046	16083	27033	27033					0.08165466542754984
HQAAIVSKI	9	Unmodified	_HQAAIVSKI_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7900695800781	2	483.790184	965.565815	-0.73759	-0.00035684	-0.09803	-4.7426E-05	-0.83562	-0.00040427	483.79002318599225	33.045	0.87073	33.051	32.664	33.534	0.0066261					63	23	4	0	0	0	0.038547	2	2345	2327;2345		134.77	17.862	1	2865800			23341	3944	16046	16083	27034;27035	27035					0.08165466542754984
HQAAIVSKI	9	Unmodified	_HQAAIVSKI_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7899475097656	2	483.790184	965.565815	0.09065	4.3856E-05	-0.98714	-0.00047757	-0.89649	-0.00043371	483.7895768384008	32.945	0.85307	33.008	32.653	33.506	0.062885					63	22	4	0	0	0	0.048057	2	2294	2276;2294		129.42	12.518	1	2609200			23342	3944	16046	16083	27036;27037	27037					0.08165466542754984
HQAAIVSKI	9	Unmodified	_HQAAIVSKI_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.790184	965.565815	-0.011707	-5.6636E-06	-0.22896	-0.00011077	-0.24067	-0.00011643	483.7900150438375	33.335	0.47994	33.104	32.876	33.356	-0.23107	0.015696	1.5215E-05	NaN	134.77	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332210			23343	3944	16046	16083							0.08165466542754984
HQAAIVSKI	9	Unmodified	_HQAAIVSKI_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.790184	965.565815	-0.6057	-0.00029303	0.054389	2.6313E-05	-0.55131	-0.00026672	483.790342809257	33.303	0.48297	33.137	32.918	33.401	-0.16565	0.048442	0.00028938	NaN	134.77	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467490			23344	3944	16046	16083							0.08165466542754984
HQAGPVIKV	9	Unmodified	_HQAGPVIKV_					0	0	0		ENST00000538134.1_1_11:114271453-114272668:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7846374511719	2	474.784902	947.55525	0.50332	0.00023897	-0.68125	-0.00032345	-0.17794	-8.4481E-05	474.78464241033896	34.426	1.1708	34.426	34.209	35.38	0					77	30	4	0	0	0	0.057894	3	2568	2556;2568;2581		125.81	53.597	1	6560000			23345	1575	16047	16084	27038;27039;27040	27039					0.07937483888315455
HQAGPVIKV	9	Unmodified	_HQAGPVIKV_					0	0	0		ENST00000538134.1_1_11:114271453-114272668:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.7853088378906	2	474.784902	947.55525	0.48276	0.00022921	-0.65836	-0.00031258	-0.17559	-8.3369E-05	474.7845532543252	34.247	1.3747	34.242	34.029	35.404	-0.0045624					79	35	5	0	0	0	0.11092	3	2517	2517;2528;2540		108.09	42.284	1	6123200			23346	1575	16047	16084	27041;27042;27043	27041					0.07937483888315455
HQAGPVIKV	9	Unmodified	_HQAGPVIKV_					0	0	0		ENST00000538134.1_1_11:114271453-114272668:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.7847595214844	2	474.784902	947.55525	-0.55386	-0.00026297	0.53554	0.00025427	-0.018319	-8.6974E-06	474.785126463654	34.299	1.5332	34.349	34.089	35.623	0.050255					85	39	4	0	0	0	0.11092	4	2515	2477;2489;2500;2515		108.09	43.775	1	5560100			23347	1575	16047	16084	27044;27045;27046;27047	27047					0.07937483888315455
HQAQLEIELAN	11	Unmodified	_HQAQLEIELAN_					0	0	0			REV__CON__Q9D646	REV__CON__Q9D646	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	633.37060546875	2	633.327859	1264.64116	0.25431	0.00016106	-3.8082	-0.0024118	-3.5539	-0.0022508	633.3249501276096	95.83	0.46912	95.707	95.598	96.067	-0.12251					14	10	2	0	0	0	0.024771	1	11884	11884		51.193	24.145	1	82774	+	+	23348	19519	16048	16085	27048	27048					0.01942979212526552
HQARLSVE	8	Unmodified	_HQARLSVE_					0	0	0			REV__ENST00000597572.1_1_19:17321325-17322591:+|nuORF	REV__ENST00000597572.1_1_19:17321325-17322591:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2959289550781	2	470.253966	938.493378	0.42495	0.00019984	-4.0042	-0.001883	-3.5793	-0.0016832	470.2515928515283	18.753	0.19459	18.621	18.499	18.694	-0.13147					5	3	2	0	0	0	0.027866	1	313	313		38.806	17.104	1	19439	+		23349	35806	16049	16086	27049	27049					0.021671324691851623
HQDSGYAPS	9	Unmodified	_HQDSGYAPS_					0	0	0		nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.75860595703125	2	481.204138	960.393724	-0.24831	-0.00011949	3.7291	0.0017945	3.4808	0.001675	481.205980860368	21.806	1.2369	21.716	21.207	22.444	-0.090092					29	25	2	0	0	0	0.024539	1	699	699		27.882	11.409	1	20144			23350	18247	16050	16087	27050	27050					-0.08805729935420459
HQEEGYGLYE	10	Unmodified	_HQEEGYGLYE_					0	0	0			REV__ENSG00000163491|ENST00000691995|NEK10	REV__ENSG00000163491|ENST00000691995|NEK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.7987060546875	2	612.762017	1223.50948	-1.4139	-0.00086636	-2.5116	-0.001539	-3.9255	-0.0024054	612.7594975282406	58.683	0.39714	58.495	58.266	58.663	-0.18795					19	9	3	0	0	0	0.03519	1	6437	6437		23.523	10.564	1	258260	+		23351	25574	16051	16088	27051	27051					-0.09333250875215526
HQFCLKALLI	10	Unmodified	_HQFCLKALLI_					0	0	0			REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.3453369140625	2	593.344269	1184.67399	-0.26085	-0.00015477	0.53971	0.00032023	0.27886	0.00016546	593.3444797147789	102.48	0.46074	102.31	102.09	102.55	-0.17178					15	10	2	0	0	0	1.089	1	12723	12723		34.173	4.331	1	231940	+		23352	34868	16052	16089	27052	27052					0.08903514801681922
HQFVEPSL	8	Unmodified	_HQFVEPSL_					0	0	0			REV__ENSG00000073282|ENST00000264731|TP63	REV__ENSG00000073282|ENST00000264731|TP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.743408203125	2	478.745442	955.476331	-0.65543	-0.00031379	-3.5998	-0.0017234	-4.2552	-0.0020372	478.7435390917275	30.002	0.98324	30.002	29.692	30.675	0					66	23	4	0	0	0	0.33369	1	1907	1907		106.42	1.6687	1	6555800	+		23353	20497	16053	16090	27053	27053					-0.003187881366102374
HQGDSKLLI	9	Unmodified	_HQGDSKLLI_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.7845764160156	2	505.785099	1009.55564	-0.83636	-0.00042302	0.50549	0.00025567	-0.33086	-0.00016735	505.78528133998105	38.314	1.087	38.232	37.984	39.071	-0.082516					71	29	4	0	0	0	0.14181	2	3197	3197;3209		101.25	24.478	1	2598000			23354	3885	16054	16091	27054;27055	27054					0.051248588175326404
HQGKSGLLNN	10	Unmodified	_HQGKSGLLNN_					0	0	0			REV__ENST00000540865.5_1_11:62620891-62622014:-|nuORF	REV__ENST00000540865.5_1_11:62620891-62622014:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.28466796875	2	534.283254	1066.55196	0.071868	3.8398E-05	2.4426	0.0013051	2.5145	0.0013435	534.2847734562439	105.72	0.98301	105.72	105.41	106.39	0					83	35	3	0	0	0	1.0508	1	13559	13559		39.253	0.44669	1	282140	+		23355	34760	16055	16092	27056	27056					0.021341890436588073
HQGPARAL	8	Unmodified	_HQGPARAL_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.23822021484375	2	425.238119	848.461684	0.63631	0.00027058	-0.39293	-0.00016709	0.24338	0.00010349	425.2378110704775	21.901	0.76335	21.721	21.347	22.11	-0.18031					27	15	2	0	0	0	1.0239	1	738	738		33.516	0	1	539000			23356	6841	16056	16093	27057	27057					0.0313918450589199
HQHAIRVR	8	Unmodified	_HQHAIRVR_					0	0	0			REV__ENSG00000158258|ENST00000458420|CLSTN2	REV__ENSG00000158258|ENST00000458420|CLSTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7649841308594	2	508.796666	1015.57878	-0.64247	-0.00032689	-1.1779	-0.0005993	-1.8203	-0.00092619	508.79594786287265	31.754	0.75215	31.754	31.509	32.262	0					30	18	2	0	0	0	0.027866	1	2145	2145		57.811	13.694	1	827400	+		23357	25184	16057	16094	27058	27058					0.07161342445510854
HQILLRHN	8	Unmodified	_HQILLRHN_					0	0	0			REV__ENST00000311127.8_1_3:124689248-124689389:-|nuORF	REV__ENST00000311127.8_1_3:124689248-124689389:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2825317382812	2	515.798875	1029.5832	-0.69749	-0.00035976	4.4432	0.0022918	3.7457	0.001932	515.8008481464742	81.22	0.93069	81.22	80.899	81.83	0					48	22	3	0	0	0	0.027866	1	10128	10128		26.796	0	1	760950	+		23358	30199	16058	16095	27059	27059					0.06958806868419742
HQIQEAIVTL	10	Unmodified	_HQIQEAIVTL_					0	0	0			REV__ENSG00000164008|ENST00000372525|C1orf50	REV__ENSG00000164008|ENST00000372525|C1orf50	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.3258056640625	2	576.324588	1150.63462	-0.070895	-4.0859E-05	3.3448	0.0019277	3.2739	0.0018869	576.3266139869812	104.17	0.57404	104.18	103.94	104.51	0.0031357					28	13	3	0	0	0	0.50517	1	13328	13328		87.696	7.9839	1	422510	+		23359	25669	16059	16096	27060	27060					0.06533086051808823
HQIQEAIVTL	10	Unmodified	_HQIQEAIVTL_					0	0	0			REV__ENSG00000164008|ENST00000372525|C1orf50	REV__ENSG00000164008|ENST00000372525|C1orf50	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.3256225585938	2	576.324588	1150.63462	-0.24848	-0.00014321	3.6608	0.0021098	3.4123	0.0019666	576.326755514441	104.23	0.57338	104.23	103.98	104.55	-0.0032196					35	13	4	0	0	0	0.45367	2	13297	13290;13297		93.195	5.2932	1	411850	+		23360	25669	16059	16096	27061;27062	27062					0.06533086051808823
HQKIISQL	8	Unmodified	_HQKIISQL_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;ENST00000562619.1_1_15:42986519-43010984:+|nuORF	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7900695800781	2	483.790184	965.565815	-0.62162	-0.00030073	-0.056615	-2.739E-05	-0.67823	-0.00032812	483.7900166996892	33.143	0.76253	33.143	32.827	33.59	0					58	20	4	0	0	0	0.34573	2	2364	2354;2364		104.75	0.73295	1	2862100			23361	6747	16060	16097	27063;27064	27064					0.08165466542777722
HQKPAQPK	8	Unmodified	_HQKPAQPK_					0	0	0			REV__ENST00000562285.1_1_16:29831087-29841859:+|nuORF	REV__ENST00000562285.1_1_16:29831087-29841859:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.27197265625	2	467.266876	932.519199	0.23826	0.00011133	-0.54735	-0.00025576	-0.30909	-0.00014443	467.2667671958361	36.484	0.32361	36.267	36.126	36.45	-0.21661					12	7	2	0	0	0	0.027866	1	2845	2845		18.324	6.8134	1	165670	+		23362	35193	16061	16098	27065	27065					0.050240267114645576
HQLGPPTK	8	Unmodified	_HQLGPPTK_					0	0	0			REV__nc|ENSG00000139496|Q9BVL2-2|NUP58	REV__nc|ENSG00000139496|Q9BVL2-2|NUP58	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.263671875	2	439.248152	876.481751	-0.28947	-0.00012715	0.97514	0.00042833	0.68568	0.00030118	439.2488619267115	41.306	0.38765	41.075	40.848	41.235	-0.23029					17	9	3	0	0	0	0.027866	1	3606	3606		16.473	0	1	117220	+		23363	23942	16062	16099	27066	27066					0.038569354458559246
HQLYHLGH	8	Unmodified	_HQLYHLGH_					0	0	0			REV__ENST00000237937.7_1_9:74969735-74969897:-|nuORF	REV__ENST00000237937.7_1_9:74969735-74969897:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7380676269531	2	502.756675	1003.4988	0.094521	4.7521E-05	-1.227	-0.00061689	-1.1325	-0.00056937	502.7569382475669	36.249	0.40068	36.032	35.845	36.245	-0.21661					12	10	2	0	0	0	0.027866	1	2847	2847		44.531	20.012	1	284630	+		23364	29438	16063	16100	27067	27067					-0.0028114394833664846
HQPMEKWSY	9	Unmodified	_HQPMEKWSY_					0	0	0		ENST00000328599.4_1_8:125464244-125464304:+|nuORF	ENST00000328599.4_1_8:125464244-125464304:+|nuORF	ENST00000328599.4_1_8:125464244-125464304:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.811279296875	3	402.518453	1204.53353	0.34171	0.00013755	2.7135	0.0010922	3.0552	0.0012298	402.519557548805	28.279	0.54102	28.11	27.926	28.467	-0.16897					20	12	2	0	0	0	0.024466	1	1677	1677		31.53	0	1	83496			23365	12304	16064	16101	27068	27068					-0.06055688922538138
HQPMIMICS	9	Unmodified	_HQPMIMICS_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.24072265625	2	530.24284	1058.47113	-0.19805	-0.00010502	-3.3111	-0.0017557	-3.5091	-0.0018607	530.2408548290116	110.65	0.59898	110.64	110.58	111.18	-0.011299					45	22	3	0	0	0	0.98128	1	13973	13973		24.203	1.1603	1	44720	+		23366	25086	16065	16102	27069	27069					-0.05576874586768099
HQQAAYTI	8	Unmodified	_HQQAAYTI_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7535705566406	2	466.235242	930.45593	0.16941	7.8987E-05	2.2849	0.0010653	2.4543	0.0011443	466.23599630784094	37.167	1.4357	37.104	36.396	37.832	-0.063385					62	38	2	0	0	0	0.027866	1	3041	3041		30.504	0	1	1290200	+		23367	23960	16066	16103	27070	27070					-0.01207958796442199
HQQLLCLS	8	Unmodified	_HQQLLCLS_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2664794921875	2	471.247295	940.480036	0.84058	0.00039612	-1.3833	-0.00065188	-0.54272	-0.00025576	471.24664339446383	33.319	0.871	33.376	33.141	34.012	0.056568					35	22	2	0	0	0	0.027866	1	2336	2336		25.45	3.4903	1	303750	+		23368	30781	16067	16104	27071	27071					0.0074155836557565635
HQQLLCLS	8	Unmodified	_HQQLLCLS_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.247295	940.480036	7.0392E-05	3.3172E-08	-0.69042	-0.00032536	-0.69035	-0.00032532	471.24707777805787	33.569	0.76807	33.569	33.321	34.09	0	0.10451	-7.2142E-06	NaN	12.207	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324310	+		23369	30781	16067	16104							0.0074155836557565635
HQQLLCLS	8	Unmodified	_HQQLLCLS_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.247295	940.480036	-0.17179	-8.0957E-05	-0.36364	-0.00017137	-0.53544	-0.00025232	471.247065390096	33.443	0.76503	33.45	33.154	33.919	0.0066261	-0.015131	0.00030077	NaN	12.207	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388850	+		23370	30781	16067	16104							0.0074155836557565635
HQQRKSPS	8	Unmodified	_HQQRKSPS_					0	0	0		ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.26873779296875	2	484.25704	966.499526	0.20561	9.9567E-05	2.3132	0.0011202	2.5188	0.0012197	484.25801099603234	46.112	0.76427	46.015	45.741	46.506	-0.096653					51	20	5	0	0	0	0.027866	1	4438	4438		47.657	13.485	1	4982800			23371	141	16068	16105	27072	27072					0.01493650700717808
HQQRKSPS	8	Unmodified	_HQQRKSPS_					0	0	0		ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2691955566406	2	484.25704	966.499526	-0.48321	-0.000234	2.7456	0.0013296	2.2624	0.0010956	484.25822931942554	46.228	0.80371	46.026	45.669	46.472	-0.20226					52	21	4	0	0	0	0.027866	1	4438	4438		30.318	10.321	1	4606500			23372	141	16068	16105	27073	27073					0.01493650700717808
HQQSFGTSSD	10	Unmodified	_HQQSFGTSSD_					0	0	0		ENSG00000176566|ENST00000319675|DCAF4L2	ENSG00000176566|ENST00000319675|DCAF4L2	ENSG00000176566|ENST00000319675|DCAF4L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2332153320312	2	547.230884	1092.44722	-1.8254	-0.00099889	0.14942	8.1769E-05	-1.6759	-0.00091712	547.2307406083183	29.682	0.24518	29.682	29.528	29.773	0					6	5	2	0	0	0	0.03519	1	1845	1845		42.864	7.246	1	69208			23373	8650	16069	16106	27074	27074					-0.09530977223539594
HQQSFGTSSD	10	Unmodified	_HQQSFGTSSD_					0	0	0		ENSG00000176566|ENST00000319675|DCAF4L2	ENSG00000176566|ENST00000319675|DCAF4L2	ENSG00000176566|ENST00000319675|DCAF4L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.230884	1092.44722	-1.1412	-0.00062448	0.10987	6.0122E-05	-1.0313	-0.00056436	547.7333520800187	29.655	0.24214	29.658	29.509	29.751	0.0031376	-0.011658	-2.1803E-05	NaN	42.864	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23618			23374	8650	16069	16106							-0.09530977223539594
HQSGIVQLL	9	Unmodified	_HQSGIVQLL_					0	0	0		ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF;ENSG00000127837|ENST00000248450|AAMP	ENST00000494720.5_1_2:219129258-219130297:-|nuORF	ENST00000494720.5_1_2:219129258-219130297:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7869567871094	2	497.787641	993.56073	-1.2608	-0.0006276	1.1267	0.00056084	-0.13411	-6.6761E-05	497.7880770920266	60.587	1.0045	60.666	60.318	61.322	0.078888					57	26	4	0	0	0	0.5973	1	6904	6904		52.937	6.9847	1	4286200			23375	4262	16070	16107	27075	27075					0.0636916268015284
HQSPKKLKVNS	11	Unmodified	_HQSPKKLKVNS_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3703002929688	2	633.369861	1264.72517	0.38898	0.00024637	-1.5913	-0.0010079	-1.2023	-0.00076153	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	0.96926	1	11980	11980		43.651	8.4988	1	3178500			23376	6234	16071	16108	27076	27076					0.10339555100085818
HQSPKKLKVNS	11	Unmodified	_HQSPKKLKVNS_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3695678710938	2	633.369861	1264.72517	1.1238	0.00071176	-2.2404	-0.001419	-1.1166	-0.00070723	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0017	1	12371	12371		36.447	4.4919	1	8250400			23377	6234	16071	16108	27077	27077					0.10339555100085818
HQSPKKLKVNS	11	Unmodified	_HQSPKKLKVNS_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3692016601562	2	633.369861	1264.72517	0.56003	0.00035471	-1.6879	-0.0010691	-1.1279	-0.00071437	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.99129	1	12331	12331		38.754	7.2238	1	8480900			23378	6234	16071	16108	27078	27078					0.10339555100085818
HQSPKKLKVNS	11	Unmodified	_HQSPKKLKVNS_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3694458007812	2	633.369861	1264.72517	-2.2268	-0.0014104	1.1831	0.00074936	-1.0437	-0.00066102	633.3704900800258	93.216	1.2663	93.076	92.131	93.397	-0.13996					96	29	4	0	0	0	0.96926	1	11444	11444		43.651	10.838	1	1660400			23379	6234	16071	16108	27079	27079					0.10339555100085818
HQSPKKLKVNS	11	Unmodified	_HQSPKKLKVNS_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3714599609375	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.90172	1	11901	11901		51.528	7.411	1	9245900			23380	6234	16071	16108	27080	27080					0.10339555100085818
HQSPKKLKVNS	11	Unmodified	_HQSPKKLKVNS_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3698120117188	2	633.369861	1264.72517	0.68614	0.00043458	-1.7624	-0.0011162	-1.0762	-0.00068165	633.3686922361071	98.61	0.99169	98.486	98.154	99.146	-0.12413					51	23	3	0	0	0	0.99129	1	12234	12234		38.754	2.3069	1	268360			23381	6234	16071	16108	27081	27081					0.10339555100085818
HQSPKKLKVNS	11	Unmodified	_HQSPKKLKVNS_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.369873046875	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.99129	1	11928	11928		38.754	1.5945	1	9845500			23382	6234	16071	16108	27082	27082					0.10339555100085818
HQTKVPNVN	9	Unmodified	_HQTKVPNVN_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7793579101562	2	518.780348	1035.54614	-0.30504	-0.00015825	-2.0568	-0.001067	-2.3618	-0.0012253	518.7792233294289	85.788	0.67728	85.73	85.603	86.28	-0.057617					24	15	2	0	0	0	0.75397	1	10739	10739		42.396	3.1433	1	1412800	+		23383	22714	16072	16109	27083	27083					0.029790905319941885
HQTTVARSVGY	11	Unmodified	_HQTTVARSVGY_					0	0	0			REV__WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	REV__WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.8789978027344	3	406.879038	1217.61528	0.386	0.00015705	-1.7972	-0.00073125	-1.4112	-0.00057419	406.8778364532396	20.056	1.7952	19.888	19.423	21.219	-0.16774					91	36	6	0	0	0	0.95911	1	516	516		45.908	7.1545	1	2785500	+		23384	20904	16073	16110	27084	27084					0.015181297608933164
HQVKKTGY	8	Unmodified	_HQVKKTGY_					0	0	0			REV__Charlie4a_dup1193|chr6:30900424-30900521:-|1.7922406137104447|0.461154855418863|1.96|522.0|1|1|sense	REV__Charlie4a_dup1193|chr6:30900424-30900521:-|1.7922406137104447|0.461154855418863|1.96|522.0|1|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2509765625	2	480.766709	959.518865	-0.017998	-8.653E-06	-3.9986	-0.0019224	-4.0166	-0.001931	480.76475319352676	19.576	0.38781	19.457	19.299	19.686	-0.11872					12	7	2	0	0	0	0.027866	1	437	437		31.955	8.9124	1	68262	+		23385	19303	16074	16111	27085	27085					0.03748606991609904
HQVPAVSSV	9	Unmodified	_HQVPAVSSV_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2502136230469	2	462.250892	922.48723	-1.0982	-0.00050766	0.36475	0.00016861	-0.73348	-0.00033905	462.25087812814104	37.707	1.2655	37.707	37.414	38.68	0					102	35	4	0	0	0	0.047345	2	3146	3146;3159		129.68	44.323	1	4333100			23386	10317	16075	16112	27086;27087	27086					0.02288614237670572
HQVPAVSSV	9	Unmodified	_HQVPAVSSV_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2502136230469	2	462.250892	922.48723	-0.8779	-0.00040581	0.28405	0.0001313	-0.59385	-0.00027451	462.2508570460389	37.601	1.2782	37.538	37.232	38.511	-0.063385					101	35	4	0	0	0	0.12602	1	3117	3117		104.75	36.262	1	4171900			23387	10317	16075	16112	27088	27088					0.02288614237670572
HQVPAVSSV	9	Unmodified	_HQVPAVSSV_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.25018310546875	2	462.250892	922.48723	-0.43049	-0.000199	-0.35195	-0.00016269	-0.78245	-0.00036169	462.2505548391584	37.737	1.2859	37.77	37.45	38.736	0.032269					107	35	4	0	0	0	0.23085	1	3104	3104		84.916	10.66	1	3746300			23388	10317	16075	16112	27089	27089					0.02288614237670572
HQVPAVSSV	9	Unmodified	_HQVPAVSSV_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.250892	922.48723	-0.23263	-0.00010753	0.2334	0.00010789	0.00076347	3.5291E-07	462.25096731757515	37.873	0.43217	37.694	37.443	37.876	-0.17929	0.017047	4.5753E-05	NaN	129.68	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275530			23389	10317	16075	16112							0.02288614237670572
HQVPAVSSV	9	Unmodified	_HQVPAVSSV_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.250892	922.48723	-0.93635	-0.00043283	0.63498	0.00029352	-0.30138	-0.00013931	462.251127670986	37.889	0.57051	37.667	37.388	37.959	-0.22148	-0.0091658	0.00041702	NaN	129.68	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235700			23390	10317	16075	16112							0.02288614237670572
HQVPAVSSV	9	Unmodified	_HQVPAVSSV_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.250892	922.48723	-0.97064	-0.00044868	0.18599	8.5972E-05	-0.78466	-0.00036271	462.25113112711375	37.902	0.50171	37.684	37.424	37.926	-0.21849	0.0072781	1.9231E-06	NaN	129.68	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351130			23391	10317	16075	16112							0.02288614237670572
HQVSHFRQ	8	Unmodified	_HQVSHFRQ_					0	0	0			REV__ENST00000399034.7_1_7:35944290-35944347:+|nuORF	REV__ENST00000399034.7_1_7:35944290-35944347:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.7850341796875	2	519.765032	1037.51551	-0.89429	-0.00046482	-1.8027	-0.00093697	-2.697	-0.0014018	519.7642920786839	48.318	0.9124	48.221	47.817	48.729	-0.097553					41	24	2	0	0	0	0.027866	1	4819	4819		38.806	3.1879	1	1953200	+		23392	31818	16076	16113	27090	27090					-0.0017464306238252902
HQVVHHVV	8	Unmodified	_HQVVHHVV_					0	0	0		nc|ENSG00000116455|Q9BQA1-2|WDR77;ENSG00000116455|ENST00000235090|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.76739501953125	2	477.767043	953.519533	1.7484	0.00083531	-1.6062	-0.0007674	0.14214	6.7911E-05	477.76612029362013	20.074	0.54032	20.143	19.924	20.464	0.068901					19	10	2	0	0	0	0.95417	1	456	456		44.531	7.5026	1	122230			23393	3549	16077	16114	27091	27091					0.04091446431334589
HQYQHHSN	8	Unmodified	_HQYQHHSN_					0	0	0			REV__ENST00000369798.6_1_6:80736110-80736227:+|nuORF	REV__ENST00000369798.6_1_6:80736110-80736227:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7444458007812	2	525.728646	1049.44274	-0.52302	-0.00027496	-0.19952	-0.00010489	-0.72254	-0.00037986	525.7289165882638	39.862	0.34323	39.713	39.553	39.896	-0.1497					13	8	2	0	0	0	0.027866	1	3421	3421		30.504	17.05	1	70888	+		23394	31101	16078	16115	27092	27092					-0.08000396855800318
HRARKEAAVL	10	Unmodified	_HRARKEAAVL_					0	0	0			REV__ENST00000370487.4_1_20:61431005-61431044:+|nuORF	REV__ENST00000370487.4_1_20:61431005-61431044:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8430786132812	2	575.843813	1149.67307	-0.082095	-4.7274E-05	-1.351	-0.00077795	-1.4331	-0.00082522	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	1.089	1	11108	11108		34.173	0.65696	1	1475600	+		23395	31129	16079	16116	27093	27093					0.10422436476960684
HRCGLEHRA	9	Unmodified	_HRCGLEHRA_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.767333984375	2	539.769791	1077.52503	-1.0988	-0.00059311	-3.9756	-0.0021459	-5.0744	-0.002739	539.7677180690861	27.747	1.0189	27.747	27.471	28.49	0					75	25	4	0	0	0	0.18915	3	1543	1543;1553;1578		90.777	16.522	1	13867000			23396	9246	16080	16117	27094;27095;27096	27094					-0.010631980485186432
HRCGLEHRA	9	Unmodified	_HRCGLEHRA_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7670288085938	2	539.769791	1077.52503	-0.97498	-0.00052627	-4.0602	-0.0021916	-5.0352	-0.0027178	539.7676621521944	27.711	1.1787	27.698	27.352	28.531	-0.012983					78	29	4	0	0	0	0.27161	3	1531	1531;1544;1556		79.451	5.196	1	13040000			23397	9246	16080	16117	27097;27098;27099	27097					-0.010631980485186432
HRCGLEHRA	9	Unmodified	_HRCGLEHRA_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7672119140625	2	539.769791	1077.52503	-1.5525	-0.000838	-3.1124	-0.00168	-4.6649	-0.002518	539.7681213805857	27.349	1.6688	27.43	26.499	28.168	0.081291					141	42	6	0	0	0	0.27161	3	1422	1422;1445;1456		79.451	13.022	1	13806000			23398	9246	16080	16117	27100;27101;27102	27100					-0.010631980485186432
HRCVRTKKKI	10	Unmodified	_HRCVRTKKKI_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.5977478027344	3	423.595919	1267.76593	0.36951	0.00015652	3.8451	0.0016288	4.2146	0.0017853	423.5974870368658	104.44	0.76906	104.31	104	104.77	-0.12561					58	21	4	0	0	0	1.1197	1	12991	12991		32.751	12.72	1	644380	+		23399	27860	16081	16118	27103	27103					0.14275617938710639
HREEEALY	8	Unmodified	_HREEEALY_					0	0	0			REV__ENSG00000133773|ENST00000256151|CCDC59	REV__ENSG00000133773|ENST00000256151|CCDC59	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.7510375976562	2	523.748713	1045.48287	0.013411	7.0242E-06	0.42147	0.00022074	0.43488	0.00022777	523.7489043412066	39.705	0.91851	39.475	39.128	40.046	-0.23021					74	23	4	0	0	0	0.93274	1	3357	3357		47.916	0	1	2871300	+		23400	23393	16082	16119	27104	27104					-0.03804894975883144
HRFFKSSA	8	Unmodified	_HRFFKSSA_					0	0	0		ENST00000525192.5_1_11:45937841-45939521:-|nuORF	ENST00000525192.5_1_11:45937841-45939521:-|nuORF	ENST00000525192.5_1_11:45937841-45939521:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2580871582031	2	490.259051	978.503549	-0.31257	-0.00015324	-1.9033	-0.00093309	-2.2158	-0.0010863	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	1.043	1	13097	13097		30.504	0	1	4889800			23401	16086	16083	16120	27105	27105					0.013437401944315752
HRFHVTVAPGT	11	Unmodified	_HRFHVTVAPGT_					0	0	0		nc|ENSG00000175920|Q18PE1-4|DOK7;ENSG00000175920|ENST00000340083|DOK7;nc|ENSG00000175920|Q18PE1-3|DOK7	nc|ENSG00000175920|Q18PE1-4|DOK7	nc|ENSG00000175920|Q18PE1-4|DOK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.3556518554688	2	611.327996	1220.64144	-2.1546	-0.0013172	-2.5719	-0.0015723	-4.7265	-0.0028895	611.3277845967928	93.894	0.34823	93.754	93.571	93.919	-0.13995					10	7	2	0	0	0	0.024741	1	11551	11551		45.972	24.012	1	19923			23402	8597	16084	16121	27106	27106					0.03994443723013319
HRFLGNRE	8	Unmodified	_HRFLGNRE_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7730102539062	2	514.772857	1027.53116	2.3426	0.0012059	-2.4777	-0.0012754	-0.13504	-6.9516E-05	514.7714515870559	18.358	0.4896	18.358	18.136	18.626	0					20	9	3	0	0	0	1.043	1	278	278		30.504	3.8107	1	198380			23403	5140	16085	16122	27107	27107					0.018496434546477758
HRGFKARPP	9	Unmodified	_HRGFKARPP_					0	0	0		nc|ENSG00000185019|O94941-2|UBOX5;ENSG00000185019|ENST00000217173|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.264892578125	2	533.306867	1064.59918	-0.61308	-0.00032696	-1.488	-0.00079358	-2.1011	-0.0011205	533.3057801453491	25.061	0.51686	24.886	24.643	25.159	-0.17484					17	11	2	0	0	0	0.024541	1	1152	1152		24.203	11.391	1	117960			23404	9399	16086	16123	27108	27108					0.06946513105299346
HRGWEAAR	8	Unmodified	_HRGWEAAR_					0	0	0			REV__ENST00000216452.8_1_14:68066909-68066996:-|nuORF	REV__ENST00000216452.8_1_14:68066909-68066996:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7926940917969	2	491.751924	981.489296	-0.68002	-0.0003344	-4.4867	-0.0022064	-5.1667	-0.0025408	491.7496626480014	80.02	0.7147	80.041	79.771	80.486	0.021439					38	16	3	0	0	0	0.027866	1	9912	9912		38.806	0	1	531270	+		23405	29317	16087	16124	27109	27109					-0.002189122338791094
HRIAYLRQR	9	Unmodified	_HRIAYLRQR_					0	0	0		ENSG00000160446|ENST00000372663|ZDHHC12;nc|ENSG00000160446|Q96GR4-3|ZDHHC12	ENSG00000160446|ENST00000372663|ZDHHC12	ENSG00000160446|ENST00000372663|ZDHHC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9228820800781	3	404.907262	1211.69996	0.50431	0.0002042	-4.4851	-0.001816	-3.9808	-0.0016118	404.9056677096139	26.408	0.35289	26.24	26.153	26.506	-0.16816					19	8	3	0	0	0	0.024456	1	1359	1359		28.081	6.3957	1	139930			23406	6816	16088	16125	27110	27110					0.10257545088165898
HRIGRVPALD	10	Unmodified	_HRIGRVPALD_					0	0	0			REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.1266	1	11730	11730		29.17	0	1	13648000	+		23407	36839	16089	16126	27111	27111					0.08550747585650242
HRIGRVPALD	10	Unmodified	_HRIGRVPALD_					0	0	0			REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3299560546875	2	567.330539	1132.64652	-0.39327	-0.00022312	-1.1254	-0.00063845	-1.5186	-0.00086157	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.1286	1	11175	11175		25.574	0	1	19210000	+		23408	36839	16089	16126	27112	27112					0.08550747585650242
HRISAIANSF	10	Unmodified	_HRISAIANSF_					0	0	0			REV__ENSG00000187957|ENST00000341772|DNER	REV__ENSG00000187957|ENST00000341772|DNER	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.30322265625	2	558.301447	1114.58834	5.1699	0.0028864	-2.0898	-0.0011667	3.0801	0.0017196	558.3001720055087	17.013	0.31833	16.763	16.61	16.928	-0.25049					17	7	3	0	0	0	1.1266	1	108	108		29.17	2.4771	1	71620	+		23409	27996	16090	16127	27113	27113					0.03563065940352317
HRKAKYLL	8	Unmodified	_HRKAKYLL_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8215942382812	2	514.821818	1027.62908	0.15995	8.2345E-05	-1.2936	-0.00066597	-1.1336	-0.00058363	514.8209766005219	23.317	1.0645	23.115	22.593	23.657	-0.20193					57	23	4	0	0	0	0.78609	1	914	914		60.294	21.041	1	687270			23410	7318	16091	16128	27114	27114					0.11637452050649699
HRKSSVPT	8	Unmodified	_HRKSSVPT_					0	0	0			REV__ENSG00000109066|ENST00000335464|TMEM104	REV__ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.25604248046875	2	456.256508	910.498464	0.065174	2.9736E-05	-0.21828	-9.9589E-05	-0.1531	-6.9853E-05	456.25631766914756	99.563	0.5978	99.394	99.161	99.759	-0.16862					35	15	3	0	0	0	1.0338	1	12344	12344		31.955	2.8053	1	196780	+		23411	21777	16092	16129	27115	27115					0.039634363317986754
HRKVIKNVAE	10	Unmodified	_HRKVIKNVAE_					0	0	0		ENSG00000130649|ENST00000252945|CYP2E1;ENST00000541080.5_1_10:135346228-135350593:+|nuORF;ENST00000368520.1_1_10:135345455-135368187:+|nuORF	ENSG00000130649|ENST00000252945|CYP2E1	ENSG00000130649|ENST00000252945|CYP2E1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.3616333007812	2	597.359296	1192.70404	0.26733	0.00015969	-1.1499	-0.00068693	-0.88261	-0.00052723	597.3584820835335	98.719	1.4456	98.583	98.147	99.592	-0.13625					99	34	4	0	0	0	1.0992	1	12337	12337		32.812	10.853	1	2905600			23412	4435	16093	16130	27116	27116					0.11539589791209437
HRLINQIVVF	10	Unmodified	_HRLINQIVVF_					0	0	0			REV__ADGRG6|p.S415F|1|0.46|ENSG00000112414|chr6:142390279-142390279|C/T|missense_variant	REV__ADGRG6|p.S415F|1|0.46|ENSG00000112414|chr6:142390279-142390279|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8689575195312	2	619.87204	1237.72953	-0.39228	-0.00024317	-3.8743	-0.0024016	-4.2666	-0.0026447	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.089	1	11932	11932		34.173	8.5985	1	4658300	+		23413	19077	16094	16131	27117	27117					0.1201706431365892
HRLLAPPL	8	Unmodified	_HRLLAPPL_					0	0	0			REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.78790283203125	2	458.789987	915.565421	-1.5662	-0.00071855	-4.4773	-0.0020541	-6.0435	-0.0027727	458.7879005444892	92.294	1.8204	92.151	91.661	93.481	-0.14356					148	42	6	0	0	0	1.0017	2	11299	11299;11323		37.028	3.2459	1	24204000	+		23414	34974	16095	16132	27118;27119	27118					0.10426091613555855
HRLRLFCK	8	Unmodified	_HRLRLFCK_					0	0	0			REV__nc|ENSG00000124490|P16562-2|CRISP2	REV__nc|ENSG00000124490|P16562-2|CRISP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3353271484375	2	536.81347	1071.61239	2.9872	0.0016036	2.1711	0.0011655	5.1584	0.0027691	536.8150278644108	18.093	0.39709	17.85	17.677	18.074	-0.24256					23	7	4	0	0	0	0.027866	1	251	251		24.203	0	1	185110	+		23415	36630	16096	16133	27120	27120					0.07944627893039069
HRPEPLFI	8	Unmodified	_HRPEPLFI_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7827453613281	2	504.784902	1007.55525	1.0542	0.00053212	-3.2885	-0.00166	-2.2343	-0.0011278	504.7831573226053	97.927	1.5521	97.803	97.197	98.749	-0.12413					77	36	3	0	0	0	0.89627	1	12176	12176		51.335	5.3835	1	1188800			23416	4054	16097	16134	27121	27121					0.05177483888314782
HRQPGSAIQHL	11	Unmodified	_HRQPGSAIQHL_					0	0	0		ENST00000445173.1_1_X:145701381-145701483:-|nuORF	ENST00000445173.1_1_X:145701381-145701483:-|nuORF	ENST00000445173.1_1_X:145701381-145701483:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3370361328125	2	622.336353	1242.65815	-2.2817	-0.00142	2.6513	0.00165	0.36961	0.00023002	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	1.0748	1	13550	13550		18.262	3.3972	1	1465400			23417	14435	16098	16135	27122	27122					0.046529446090062265
HRRLDLKSQF	10	Unmodified	_HRRLDLKSQF_					0	0	0			REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.91265869140625	3	433.914194	1298.72075	0.59914	0.00025997	-3.74	-0.0016228	-3.1408	-0.0013629	433.9125825213623	21.01	1.6537	21.079	20.514	22.167	0.068918					79	33	5	0	0	0	1.118	1	552	552		20.03	0.7678	1	1031900	+		23418	24169	16099	16136	27123	27123					0.08334090677158201
HRRQLKVV	8	Unmodified	_HRRQLKVV_					0	0	0			REV__ENST00000558588.5_1_15:40581558-40583812:-|nuORF	REV__ENST00000558588.5_1_15:40581558-40583812:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2520141601562	2	518.330342	1034.64613	0.5334	0.00027648	2.0313	0.0010529	2.5647	0.0013294	518.3311372747343	74.731	0.79678	74.548	74.267	75.064	-0.18279					24	18	2	0	0	0	0.027866	1	8866	8866		18.324	0	1	99095	+		23419	23791	16100	16137	27124	27124					0.13019372656458472
HRRRPPPSV	9	Unmodified	_HRRRPPPSV_					0	0	0			REV__ENST00000582375.1_1_18:9136379-9136607:-|nuORF	REV__ENST00000582375.1_1_18:9136379-9136607:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3264770507812	2	551.323048	1100.63154	-0.012806	-7.0603E-06	1.3192	0.00072728	1.3064	0.00072022	551.3239571242609	98.749	0.39464	98.749	98.562	98.956	0					11	8	2	0	0	0	0.024541	1	12636	12636		14.865	0	1	58518	+		23420	35539	16101	16138	27125	27125					0.08525300508313194
HRRSLLPPP	9	Unmodified	_HRRSLLPPP_					0	0	0			REV__ENST00000526640.5_1_11:61732976-61735060:-|nuORF	REV__ENST00000526640.5_1_11:61732976-61735060:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.31982421875	2	536.82235	1071.63015	0.55986	0.00030054	-0.91692	-0.00049222	-0.35706	-0.00019168	536.8196482336023	20.309	0.58076	20.113	19.854	20.435	-0.19577					15	11	2	0	0	0	0.024541	1	491	491		23.042	2.5607	1	20996	+		23421	34454	16102	16139	27126	27126					0.09719666419550776
HRRVDCVHR	9	Unmodified	_HRRVDCVHR_					0	0	0			REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF	REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.31982421875	2	589.309615	1176.60468	-0.11735	-6.9155E-05	-0.96119	-0.00056644	-1.0785	-0.00063559	589.3089438492946	21.471	0.38045	21.294	21.113	21.494	-0.17721					12	7	2	0	0	0	0.024427	1	673	673		34.173	1.3601	1	37206	+		23422	29710	16103	16140	27127	27127					0.023438686254621643
HRRVHIRRVRH	11	Unmodified	_HRRVHIRRVRH_					0	0	0			REV__ENST00000566842.5_1_16:29918195-29922616:-|nuORF	REV__ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8369140625	3	507.978526	1520.91375	1.2086	0.00061393	3.5699	0.0018134	4.7784	0.0024273	507.9804168114756	17.637	0.24928	17.483	17.358	17.607	-0.15403					7	4	2	0	0	0	0.024879	1	214	214		5.4129	2.387	1	12084	+		23423	26906	16104	16141	27128	27128					0.17412690307583034
HSADLNRNY	9	Unmodified	_HSADLNRNY_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;PTPN12|p.K411Q|1|0.15|ENSG00000127947|chr7:77626910-77626910|A/C|missense_variant	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2570190429688	2	545.257237	1088.49992	-0.84009	-0.00045806	1.0122	0.00055189	0.17208	9.3829E-05	545.2575015628819	25.521	0.71069	25.294	25.018	25.729	-0.22683					40	16	5	0	0	0	0.17845	2	1220	1220;1232		93.143	22.327	1	1076100			23424	4268	16105	16142	27129;27130	27129					-0.04078974370099786
HSADLNRNY	9	Unmodified	_HSADLNRNY_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;PTPN12|p.K411Q|1|0.15|ENSG00000127947|chr7:77626910-77626910|A/C|missense_variant	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.257080078125	2	545.257237	1088.49992	-0.36049	-0.00019656	0.68205	0.00037189	0.32155	0.00017533	545.2571208732483	25.336	0.8446	25.165	24.737	25.581	-0.17078					42	19	4	0	0	0	0.37611	1	1183	1183		67.494	16.158	1	794820			23425	4268	16105	16142	27131	27131					-0.04078974370099786
HSADLNRNY	9	Unmodified	_HSADLNRNY_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;PTPN12|p.K411Q|1|0.15|ENSG00000127947|chr7:77626910-77626910|A/C|missense_variant	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2568969726562	2	545.257237	1088.49992	-0.029608	-1.6144E-05	0.42104	0.00022958	0.39143	0.00021343	545.2569650337555	25.3	0.71508	25.128	24.821	25.536	-0.17151					39	16	4	0	0	0	0.32064	1	1165	1165		72.879	26.907	1	912190			23426	4268	16105	16142	27132	27132					-0.04078974370099786
HSALVKKV	8	Unmodified	_HSALVKKV_					0	0	0			REV__ENSG00000101216|ENST00000370077|GMEB2	REV__ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2480773925781	2	441.281995	880.549437	0.071002	3.1332E-05	-0.0045525	-2.0089E-06	0.066449	2.9323E-05	441.2817536139896	57.582	1.3089	57.582	57.148	58.457	0					57	34	4	0	0	0	0.027866	1	6557	6557		51.335	0	1	3060200	+		23427	21203	16106	16143	27133	27133					0.10438385376653514
HSATGLIFL	9	Unmodified	_HSATGLIFL_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.771484375	2	479.77146	957.528367	1.1288	0.00054155	-1.202	-0.00057669	-0.073238	-3.5137E-05	479.77082696843894	74.734	1.2646	74.734	74.042	75.307	0					83	30	5	0	0	0	0.70186	1	9166	9166		45.952	1.8352	1	8505600	+		23428	21097	16107	16144	27134	27134					0.04790375277127623
HSATSVFV	8	Unmodified	_HSATSVFV_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2188720703125	2	424.21906	846.423567	1.1722	0.00049729	-2.2617	-0.00095947	-1.0895	-0.00046218	424.21803932906255	99.133	1.6852	99.009	98.111	99.796	-0.12458					116	42	4	0	0	0	1.0133	1	12351	12351		35.201	1.6851	1	4851200			23429	10412	16108	16145	27135	27135					-0.005787461994259502
HSDDLCKHKG	10	Unmodified	_HSDDLCKHKG_					0	0	0		ENST00000393733.6_1_19:10370145-10370232:+|nuORF	ENST00000393733.6_1_19:10370145-10370232:+|nuORF	ENST00000393733.6_1_19:10370145-10370232:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.731689453125	2	570.266747	1138.51894	0.20127	0.00011478	0.91845	0.00052376	1.1197	0.00063854	570.7696347440858	72.136	1.2705	71.861	71.314	72.584	-0.27509					51	30	2	0	0	0	0.03519	1	8538	8538		19.104	0	1	397650			23430	13461	16109	16146	27136	27136					-0.04477761070734232
HSDEECIYTI	10	Unmodified	_HSDEECIYTI_					0	0	0			REV__nc|ENSG00000255221|Q5XLA6|CARD17P	REV__nc|ENSG00000255221|Q5XLA6|CARD17P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.8614196777344	3	403.841261	1208.50195	1.6736	0.00067588	-3.6714	-0.0014826	-1.9977	-0.00080676	403.8396885536716	23.24	0.3271	23.316	23.234	23.561	0.076239					9	7	2	0	0	0	0.03519	1	864	864		14.086	0	1	60700	+		23431	37174	16110	16147	27137	27137					-0.09395726467164423
HSDEHLALY	9	Unmodified	_HSDEHLALY_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.7984619140625	2	542.756538	1083.49852	-0.2908	-0.00015784	-2.631	-0.001428	-2.9218	-0.0015858	542.7549976896837	32.195	0.39006	31.958	31.74	32.13	-0.23667					13	8	2	0	0	0	0.024487	1	2172	2172		24.203	3.7209	1	96636	+		23432	28400	16111	16148	27138	27138					-0.0398860845884883
HSDFLSFAHG	10	Unmodified	_HSDFLSFAHG_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4|QRICH2	REV__nc|ENSG00000129646|Q9H0J4|QRICH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2596435546875	2	559.256705	1116.49886	1.0701	0.00059843	-1.9034	-0.0010645	-0.83331	-0.00046603	559.2564097721264	97.61	0.53087	97.487	97.243	97.774	-0.12368					24	11	3	0	0	0	1.089	1	12084	12084		34.173	1.3601	1	78399	+		23433	23055	16112	16149	27139	27139					-0.054731887390062184
HSDGKTYLY	9	Unmodified	_HSDGKTYLY_					0	0	0		ENST00000521304.1_1_2:89533689-89534392:-|nuORF;nc|ENSG00000253998|A2NJV5|IGKV2-29;nc|ENSG00000243264|A0A075B6S2|IGKV2D-29	ENST00000521304.1_1_2:89533689-89534392:-|nuORF	ENST00000521304.1_1_2:89533689-89534392:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.7984619140625	2	542.258914	1082.50327	-0.33456	-0.00018142	0.1566	8.4918E-05	-0.17796	-9.65E-05	542.258723196506	31.715	0.5313	31.474	31.332	31.863	-0.24109					12	12	2	0	0	0	0.024466	1	2172	2172		24.519	0	1	93573			23434	16000	16113	16150	27140	27140					-0.034677243161013394
HSDHLKLLW	9	Unmodified	_HSDHLKLLW_					0	0	0		ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.7738037109375	2	574.81419	1147.61383	-0.3753	-0.00021573	4.0958	0.0023543	3.7205	0.0021386	575.3180061657195	49.022	0.48388	48.84	48.631	49.115	-0.18206					17	12	2	0	0	0	0.024541	1	4921	4921		11.511	5.1984	1	224940			23435	7087;18446	16114	16151	27141	27141					0.04592540462795114
HSDHLKLLW	9	Unmodified	_HSDHLKLLW_					0	0	0		ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	574.81419	1147.61383	-0.83111	-0.00047773	4.17	0.002397	3.3389	0.0019192	575.3182065347578	48.845	0.44838	48.745	48.581	49.029	-0.1008	-0.091399	0.00010336	NaN	11.511	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248760			23436	7087;18446	16114	16151							0.04592540462795114
HSDHLKLLW	9	Unmodified	_HSDHLKLLW_					0	0	0		ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	574.81419	1147.61383	-0.45067	-0.00025905	3.887	0.0022343	3.4363	0.0019753	574.8160401340037	49.203	0.40476	48.923	48.718	49.123	-0.27977	0.087065	-0.00022198	NaN	11.511	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160430			23437	7087;18446	16114	16151							0.04592540462795114
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-2|SUPT7L	nc|ENSG00000119760|O94864-2|SUPT7L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.7152099609375	2	548.714536	1095.41452	-1.0073	-0.00055273	0.10927	5.996E-05	-0.89804	-0.00049277	548.7145286666821	44.176	1.1214	44.071	43.78	44.901	-0.10468					87	29	4	0	0	0	0.33245	4	4092	4092;4103;4115;4129		71.296	32.043	1	8203900			23438	3764	16115	16152	27142;27143;27144;27145	27142					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-2|SUPT7L	nc|ENSG00000119760|O94864-2|SUPT7L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.7147216796875	2	548.714536	1095.41452	-0.99012	-0.00054329	0.10418	5.7163E-05	-0.88594	-0.00048613	548.7145242090253	44.362	1.3752	44.118	43.79	45.165	-0.2444					91	36	4	0	0	0	0.17455	4	4115	4104;4115;4127;4139		94.006	28.203	1	6542700			23439	3764	16115	16152	27146;27147;27148;27149	27147					-0.12937184346424146
HSDPESDFY	9	Unmodified	_HSDPESDFY_					0	0	0		nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-2|SUPT7L	nc|ENSG00000119760|O94864-2|SUPT7L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.7145385742188	2	548.714536	1095.41452	-1.2452	-0.00068326	0.50561	0.00027743	-0.7396	-0.00040583	548.7147316131485	44.364	1.1142	44.144	43.788	44.902	-0.21939					91	29	5	0	0	0	0.11848	4	4114	4105;4114;4126;4139		106.42	43.109	1	6625600			23440	3764	16115	16152	27150;27151;27152;27153	27151					-0.12937184346424146
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7402648925781	2	494.740357	987.46616	-0.74452	-0.00036835	0.68233	0.00033757	-0.062198	-3.0772E-05	494.74059134076685	53.446	1.7531	53.319	52.874	54.627	-0.12705					116	50	4	0	0	0	0.31247	2	5592	5592;5603		73.975	10.668	1	6980700			23441	5911	16116	16153	27154;27155	27154					-0.028073958618506367
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7405090332031	2	494.740357	987.46616	-0.062591	-3.0966E-05	-0.036621	-1.8118E-05	-0.099212	-4.9084E-05	494.74021502667273	53.635	1.7588	53.39	52.975	54.733	-0.2453					117	51	4	0	0	0	0.43973	1	5614	5614		63.306	9.9548	1	6426300			23442	5911	16116	16153	27156	27156					-0.028073958618506367
HSDPSILGY	9	Unmodified	_HSDPSILGY_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7396545410156	2	494.740357	987.46616	-0.25034	-0.00012385	0.044285	2.1909E-05	-0.20606	-0.00010194	494.7402494508613	53.547	1.4293	53.35	52.897	54.327	-0.19739					102	40	4	0	0	0	0.43973	1	5608	5608		63.306	0	1	5583700			23443	5911	16116	16153	27157	27157					-0.028073958618506367
HSEAAVAR	8	Unmodified	_HSEAAVAR_					0	0	0			REV__ENSG00000147586|ENST00000276585|MRPS28	REV__ENSG00000147586|ENST00000276585|MRPS28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.2403259277344	2	420.719759	839.424964	2.2046	0.00092752	3.2526	0.0013684	5.4572	0.0022959	420.72107797411365	23.918	0.53261	23.737	23.539	24.072	-0.18089					18	11	2	0	0	0	0.027866	1	963	963		23.042	6.5693	1	76003	+		23444	24567	16117	16154	27158	27158					-0.0011711211067222393
HSEAHTLLY	9	Unmodified	_HSEAHTLLY_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.P800Lfs*30|1|0.21|ENSG00000068024|chr2:239087589-239087589|G/-|frameshift_variant;ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4	ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7667846679688	2	535.766906	1069.51926	0.014728	7.8909E-06	0.044865	2.4037E-05	0.059594	3.1928E-05	535.7669246439028	37.14	1.35	36.947	36.375	37.725	-0.193					103	34	5	0	0	0	0.06122	5	2951	2942;2951;2962;2974;2988		124.59	43.582	1	9955100			23445	1374;14726	16118	16155	27159;27160;27161;27162;27163	27160					-0.012720180791802704
HSEAHTLLY	9	Unmodified	_HSEAHTLLY_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.P800Lfs*30|1|0.21|ENSG00000068024|chr2:239087589-239087589|G/-|frameshift_variant;ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4	ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7666625976562	2	535.766906	1069.51926	-1.1505	-0.00061641	1.0353	0.00055468	-0.11522	-6.1729E-05	535.7674643705552	37.124	1.246	36.905	36.405	37.651	-0.2195					103	31	5	0	0	0	0.016838	5	2943	2935;2943;2955;2967;2983		152.63	59.438	1	9850600			23446	1374;14726	16118	16155	27164;27165;27166;27167;27168	27165					-0.012720180791802704
HSEAHTLLY	9	Unmodified	_HSEAHTLLY_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.P800Lfs*30|1|0.21|ENSG00000068024|chr2:239087589-239087589|G/-|frameshift_variant;ENST00000460235.1_1_2:240024358-240029778:-|nuORF;ENST00000487617.5_1_2:240002789-240024568:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4	ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7667236328125	2	535.766906	1069.51926	-0.24732	-0.00013251	0.18778	0.00010061	-0.059536	-3.1897E-05	535.766993825871	37.111	1.4415	36.902	36.525	37.967	-0.2092					115	37	5	0	0	0	0.08613	4	2943	2920;2943;2956;2970		115.46	43.582	1	8674400			23447	1374;14726	16118	16155	27169;27170;27171;27172	27170					-0.012720180791802704
HSEEEPSEY	9	Unmodified	_HSEEEPSEY_					0	0	0		ZNF37A|p.F224Cfs*13|1|0.08|ENSG00000075407|chr10:38117821-38117822|-/GTTCAGTATATTTGCAGGTTTTC|frameshift_variant;ENSG00000075407|ENST00000685332|ZNF37A	ZNF37A|p.F224Cfs*13|1|0.08|ENSG00000075407|chr10:38117821-38117822|-/GTTCAGTATATTTGCAGGTTTTC|frameshift_variant	ZNF37A|p.F224Cfs*13|1|0.08|ENSG00000075407|chr10:38117821-38117822|-/GTTCAGTATATTTGCAGGTTTTC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.7870483398438	2	553.717276	1105.42	-0.1153	-6.3843E-05	-2.0467	-0.0011333	-2.162	-0.0011972	553.7159682741456	55.702	0.46516	55.486	55.237	55.702	-0.21607					27	12	3	0	0	0	0.024506	1	6006	6006		23.042	0	1	479920			23448	1557	16119	16156	27173	27173					-0.1284950555461819
HSEGRQGGGL	10	Unmodified	_HSEGRQGGGL_					0	0	0		ENST00000302937.8_1_19:54694186-54695312:+|nuORF	ENST00000302937.8_1_19:54694186-54695312:+|nuORF	ENST00000302937.8_1_19:54694186-54695312:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.3167419433594	2	499.244129	996.473705	-1.0932	-0.00054577	0.55556	0.00027736	-0.53763	-0.00026841	499.2438223327596	79.867	1.5495	79.695	78.986	80.536	-0.17226					64	36	3	0	0	0	0.03519	1	9822	9822		31.53	0	1	231660			23449	11966	16120	16157	27174	27174					-0.024672435415595828
HSENVHISGV	10	Unmodified	_HSENVHISGV_					0	0	0		LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant;ENSG00000147650|ENST00000276654|LRP12	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.767333984375	2	539.767437	1077.52032	-1.0988	-0.00059311	0.38576	0.00020822	-0.71306	-0.00038489	539.7677180690861	27.747	1.0189	27.747	27.471	28.49	0					75	25	4	0	0	0	0.54901	2	1533	1533;1565		82.75	13.964	1	13867000			23450	5986	16121	16158	27175;27176	27175					-0.015338037102765156
HSENVHISGV	10	Unmodified	_HSENVHISGV_					0	0	0		LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant;ENSG00000147650|ENST00000276654|LRP12	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7673950195312	2	539.767437	1077.52032	-0.97499	-0.00052627	0.30112	0.00016254	-0.67386	-0.00036373	539.7676621521944	27.711	1.1787	27.698	27.352	28.531	-0.012983					78	29	4	0	0	0	0.61732	1	1510	1510		75.043	6.2565	1	13040000			23451	5986	16121	16158	27177	27177					-0.015338037102765156
HSENVHISGV	10	Unmodified	_HSENVHISGV_					0	0	0		LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant;ENSG00000147650|ENST00000276654|LRP12	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	LRP12|p.D801Lfs*8|1|0.27|ENSG00000147650|chr8:104490852-104490853|-/TGAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7673950195312	2	539.767437	1077.52032	-1.5525	-0.000838	1.2489	0.00067412	-0.30361	-0.00016388	539.7681213805857	27.349	1.6688	27.43	26.499	28.168	0.081291					141	42	6	0	0	0	0.75651	1	1434	1434		63.534	4.7519	1	13806000			23452	5986	16121	16158	27178	27178					-0.015338037102765156
HSETPEIRKY	10	Unmodified	_HSETPEIRKY_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000574871.1_1_17:4798302-4798913:+|nuORF	nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000141503|Q8N4C8-5|MINK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.2406311035156	3	420.55081	1258.6306	-0.95838	-0.00040305	1.285	0.0005404	0.3266	0.00013735	420.5513213772357	37.462	0.76929	37.242	36.846	37.615	-0.2195					41	19	3	0	0	0	0.03519	1	3029	3029		20.837	6.1435	1	475260			23453	5499	16122	16159	27179	27179					0.01162996558082341
HSEVGLPVYAH	11	Unmodified	_HSEVGLPVYAH_					0	0	0		ENSG00000198354|ENST00000360028|DCAF12L2;ENSG00000198889|ENST00000371126|DCAF12L1	ENSG00000198354|ENST00000360028|DCAF12L2	ENSG00000198354|ENST00000360028|DCAF12L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5111389160156	3	403.540134	1207.59857	0.51964	0.0002097	-0.45348	-0.000183	0.066163	2.6699E-05	403.5399000708715	32.456	0.70977	32.219	31.954	32.664	-0.23666					29	16	2	0	0	0	0.024757	1	2213	2213		42.338	10.704	1	412150			23454	10125	16123	16160	27180	27180					0.0030762887497530755
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.7787475585938	2	581.780013	1161.54547	-0.99007	-0.000576	0.19929	0.00011594	-0.79078	-0.00046006	581.780058395429	44.807	1.0701	44.707	44.354	45.424	-0.099449					112	28	6	0	0	0	0.016838	5	4205	4184;4194;4205;4218;4229		152.63	75.859	1	7949900			23455	2940	16124	16161	27181;27182;27183;27184;27185	27183					-0.028837489076977363
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.7794189453125	2	581.780013	1161.54547	-1.2322	-0.00071688	0.37637	0.00021897	-0.85585	-0.00049792	581.7801826517288	44.985	1.3203	44.732	44.354	45.674	-0.25252					154	35	8	0	0	0	0.028181	4	4227	4203;4215;4227;4241		143.02	49.824	1	8525400			23456	2940	16124	16161	27186;27187;27188;27189	27188					-0.028837489076977363
HSEYHTLLY	9	Unmodified	_HSEYHTLLY_					0	0	0		ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.7796630859375	2	581.780013	1161.54547	-1.0851	-0.0006313	0.28119	0.00016359	-0.80393	-0.00046771	581.780038944419	44.988	1.0095	44.777	44.474	45.484	-0.21109					111	27	7	0	0	0	0.028181	4	4200	4200;4210;4221;4234		143.02	60.779	1	8229500			23457	2940	16124	16161	27190;27191;27192;27193	27190					-0.028837489076977363
HSEYVTTIL	9	Unmodified	_HSEYVTTIL_					0	0	0		SCN1A|p.Q1565H|1|0.12|ENSG00000144285|chr2:165994303-165994303|C/G|missense_variant	SCN1A|p.Q1565H|1|0.12|ENSG00000144285|chr2:165994303-165994303|C/G|missense_variant	SCN1A|p.Q1565H|1|0.12|ENSG00000144285|chr2:165994303-165994303|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7721557617188	2	531.776939	1061.53933	-0.19118	-0.00010167	-3.6982	-0.0019666	-3.8894	-0.0020683	531.775122620599	106.54	0.62704	106.54	106.23	106.86	0.0018311					46	21	3	0	0	0	0.62163	1	13586	13586		51.335	13.524	1	512730			23458	37861	16125	16162	27194	27194					0.011017328607522359
HSEYVTTIL	9	Unmodified	_HSEYVTTIL_					0	0	0		SCN1A|p.Q1565H|1|0.12|ENSG00000144285|chr2:165994303-165994303|C/G|missense_variant	SCN1A|p.Q1565H|1|0.12|ENSG00000144285|chr2:165994303-165994303|C/G|missense_variant	SCN1A|p.Q1565H|1|0.12|ENSG00000144285|chr2:165994303-165994303|C/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	531.776939	1061.53933	0.19539	0.00010391	-5.0241	-0.0026717	-4.8287	-0.0025678	532.275073301685	106.35	0.83064	106.35	106.03	106.86	0	-0.086948	-0.0011989	NaN	51.335	46	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135670			23459	37861	16125	16162							0.011017328607522359
HSFCNCQSF	9	Unmodified	_HSFCNCQSF_					0	0	0			REV__nc|ENSG00000183283|Q15038-5|DAZAP2	REV__nc|ENSG00000183283|Q15038-5|DAZAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.278564453125	2	536.702394	1071.39024	-0.60913	-0.00032692	-3.2511	-0.0017449	-3.8602	-0.0020718	536.7005446638655	24.871	0.34725	24.645	24.494	24.842	-0.22683					14	7	2	0	0	0	0.024447	1	1139	1139		32.812	0	1	90839	+		23460	37003	16126	16163	27195	27195					-0.1426043930528067
HSFELDETAL	10	Unmodified	_HSFELDETAL_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.844482421875	2	581.274761	1160.53497	-0.79698	-0.00046326	4.1217	0.0023958	3.3247	0.0019326	581.2767545865842	68.639	0.68401	68.378	68.063	68.747	-0.26165					31	16	3	0	0	0	0.03519	1	7955	7955		20.947	5.3051	1	277000			23461	10139	16127	16164	27196	27196					-0.03887776352803485
HSFLLLGLL	9	Unmodified	_HSFLLLGLL_					0	0	0			REV__ENST00000323469.4_1_19:2716803-2717172:-|nuORF	REV__ENST00000323469.4_1_19:2716803-2717172:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.81085205078125	2	506.813128	1011.6117	-0.17932	-9.0884E-05	-3.8689	-0.0019608	-4.0482	-0.0020517	506.81107071821265	18.041	0.49695	17.834	17.564	18.061	-0.20669					20	8	4	0	0	0	0.96855	1	249	249		26.796	0.10319	1	275350	+		23462	30372	16128	16165	27197	27197					0.1063611172498895
HSFLYQPDW	9	Unmodified	_HSFLYQPDW_					0	0	0		ENST00000531733.1_1_8:11666026-11667401:+|nuORF;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	ENST00000531733.1_1_8:11666026-11667401:+|nuORF	ENST00000531733.1_1_8:11666026-11667401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.7745361328125	2	596.774731	1191.53491	-1.2935	-0.00077192	0.98382	0.00058712	-0.30967	-0.0001848	596.7753145721213	68.748	2.0232	68.486	68.103	70.126	-0.26166					136	48	3	0	0	0	0.013337	7	7946	7926;7935;7946;7959;7972;7984;7996		176.44	88.748	1	15484000			23463	1666	16129	16166	27198;27199;27200;27201;27202;27203;27204	27200					-0.05319731562144625
HSFLYQPDW	9	Unmodified	_HSFLYQPDW_					0	0	0		ENST00000531733.1_1_8:11666026-11667401:+|nuORF;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	ENST00000531733.1_1_8:11666026-11667401:+|nuORF	ENST00000531733.1_1_8:11666026-11667401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.7747192382812	2	596.774731	1191.53491	-0.27106	-0.00016176	-0.17135	-0.00010226	-0.44241	-0.00026402	596.7746093668939	68.692	2.0792	68.449	68.072	70.151	-0.24277					149	50	4	0	0	0	0.012922	7	7953	7932;7941;7953;7965;7977;7989;8001		176.44	86.075	1	17772000			23464	1666	16129	16166	27205;27206;27207;27208;27209;27210;27211	27207					-0.05319731562144625
HSFLYQPDW	9	Unmodified	_HSFLYQPDW_					0	0	0		ENST00000531733.1_1_8:11666026-11667401:+|nuORF;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	ENST00000531733.1_1_8:11666026-11667401:+|nuORF	ENST00000531733.1_1_8:11666026-11667401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.7740478515625	2	596.774731	1191.53491	-0.11336	-6.7651E-05	-0.30284	-0.00018073	-0.41621	-0.00024838	596.7745211348778	68.712	2.002	68.481	68.077	70.079	-0.23048					129	48	4	0	0	0	0.014738	6	7955	7918;7930;7942;7955;7967;7979		163.15	78.235	1	16426000			23465	1666	16129	16166	27212;27213;27214;27215;27216;27217	27215					-0.05319731562144625
HSFQGAYGL	9	Unmodified	_HSFQGAYGL_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;ENST00000552168.1_1_12:53455573-53455786:+|nuORF	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.80255126953125	2	490.235242	978.45593	-0.99927	-0.00048988	-3.3912	-0.0016625	-4.3905	-0.0021524	490.2334227256255	25.569	0.62404	25.342	25.105	25.729	-0.22683					18	14	2	0	0	0	0.023775	1	1200	1200		57.811	15.415	1	70862			23466	3086	16130	16167	27218	27218					-0.034159587964154525
HSFRQPPE	8	Unmodified	_HSFRQPPE_					0	0	0		nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF;nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66	nc|ENSG00000166436|O15016-3|TRIM66	nc|ENSG00000166436|O15016-3|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.8039245605469	2	499.246141	996.477728	0.27212	0.00013586	-4.3056	-0.0021495	-4.0335	-0.0020137	499.24376374005374	52.866	0.63287	52.607	52.21	52.843	-0.25838					25	15	2	0	0	0	0.027866	1	5535	5535		53.351	25.097	1	136730			23467	7559	16131	16168	27219	27219					-0.02065154047852502
HSFWRALF	8	Unmodified	_HSFWRALF_					0	0	0			REV__nc|ENSG00000059145|Q9H9P5-6|UNKL	REV__nc|ENSG00000059145|Q9H9P5-6|UNKL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7972412109375	2	532.277244	1062.53993	-1.8494	-0.00098441	-3.3629	-0.00179	-5.2123	-0.0027744	532.275633184304	90.825	0.54536	90.825	90.384	90.929	0					17	12	2	0	0	0	0.027866	1	11481	11481		26.796	12.132	1	55599	+		23468	36459	16132	16169	27220	27220					0.011166170911337758
HSGMKPLV	8	Oxidation (M)	_HSGM(Oxidation (M))KPLV_		HSGM(1)KPLV		HSGM(58)KPLV	0	0	1			REV__nc|ENSG00000279688|A6NL99|AQP7P3	REV__nc|ENSG00000279688|A6NL99|AQP7P3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.7351379394531	2	442.736563	883.458573	-0.36527	-0.00016172	-3.4632	-0.0015333	-3.8284	-0.001695	442.73503775671423	23.477	1.4062	23.297	22.929	24.335	-0.17989					73	32	3	0	0	0	0.81662	1	946	946		57.811	7.7867	1	7343900	+		23469	25865	16133	16170	27221	27221		765			0.012181733368720415
HSGPFFTF	8	Unmodified	_HSGPFFTF_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2;ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2216491699219	2	470.221603	938.428653	0.090917	4.2751E-05	-0.075982	-3.5729E-05	0.014934	7.0224E-06	470.2214480358267	68.405	1.6414	68.144	67.774	69.415	-0.26166					103	39	4	0	0	0	0.29372	3	7912	7886;7899;7912		114.59	31.299	1	5075400			23470	4952;15122	16134	16171	27222;27223;27224	27224					-0.043024423368024145
HSGPFFTF	8	Unmodified	_HSGPFFTF_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2;ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2215576171875	2	470.221603	938.428653	0.56051	0.00026357	-0.43058	-0.00020247	0.12993	6.1097E-05	470.2212853751802	68.387	1.3757	68.144	67.747	69.123	-0.24277					89	33	4	0	0	0	0.40853	5	7889	7889;7900;7912;7924;7939		96.048	16.597	1	5333500			23471	4952;15122	16134	16171	27225;27226;27227;27228;27229	27225					-0.043024423368024145
HSGPFFTF	8	Unmodified	_HSGPFFTF_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2;ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2214660644531	2	470.221603	938.428653	0.15164	7.1305E-05	-0.070375	-3.3092E-05	0.081267	3.8213E-05	470.2214640361385	68.388	1.3007	68.158	67.794	69.095	-0.23047					85	31	4	0	0	0	0.52467	3	7880	7880;7902;7927		83.287	9.3125	1	4529000			23472	4952;15122	16134	16171	27230;27231;27232	27230					-0.043024423368024145
HSGPGLLQLW	10	Unmodified	_HSGPGLLQLW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2;ENST00000470115.1_1_2:27559063-27560169:-|nuORF	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.300537109375	2	554.300916	1106.58728	0.2306	0.00012782	-0.040404	-2.2396E-05	0.19019	0.00010542	554.3007485676574	77.345	0.79958	77.083	76.813	77.612	-0.26202					42	19	3	0	0	0	0.31896	1	9199	9199		107.01	8.3781	1	1356500			23473	3417	16135	16172	27233	27233					0.038248515714712994
HSGPGLLQLW	10	Unmodified	_HSGPGLLQLW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2;ENST00000470115.1_1_2:27559063-27560169:-|nuORF	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3014526367188	2	554.300916	1106.58728	0.75301	0.00041739	-0.50663	-0.00028082	0.24638	0.00013657	554.3003591379683	77.298	1.0743	77.056	76.792	77.866	-0.24232					48	26	3	0	0	0	0.74632	1	9221	9221		64.207	10.856	1	1523100			23474	3417	16135	16172	27234	27234					0.038248515714712994
HSGSTLQH	8	Unmodified	_HSGSTLQH_					0	0	0			REV__ENST00000431994.5_1_16:32890029-32891910:-|nuORF	REV__ENST00000431994.5_1_16:32890029-32891910:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.2564392089844	2	433.709391	865.404229	1.2835	0.00055667	-1.8875	-0.00081861	-0.60396	-0.00026194	433.7087827691627	36.946	0.63472	36.736	36.364	36.999	-0.2092					20	15	2	0	0	0	0.027866	1	2866	2866		23.042	3.6825	1	72891	+		23475	32374	16136	16173	27235	27235					-0.03385702490334097
HSGSTLQH	8	Unmodified	_HSGSTLQH_					0	0	0			REV__ENST00000431994.5_1_16:32890029-32891910:-|nuORF	REV__ENST00000431994.5_1_16:32890029-32891910:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	433.709391	865.404229	0.43616	0.00018917	0.47998	0.00020817	0.91615	0.00039734	433.70938627720227	36.986	0.50202	36.793	36.537	37.039	-0.193	0.02823	0.00096428	NaN	23.042	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50901	+		23476	32374	16136	16173							-0.03385702490334097
HSHAMHEP	8	Unmodified	_HSHAMHEP_					0	0	0			REV__ENSG00000189253|ENST00000329862|TRIM64B	REV__ENSG00000189253|ENST00000329862|TRIM64B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.3002624511719	2	473.203418	944.392284	1.002	0.00047413	-2.3828	-0.0011275	-1.3808	-0.00065342	473.2021738363838	19.718	0.68337	19.518	19.305	19.988	-0.2001					17	13	2	0	0	0	0.027866	1	503	503		19.36	0	1	80330	+		23477	28111	16137	16174	27236	27236					-0.08213642505177177
HSHLLALVL	9	Unmodified	_HSHLLALVL_					0	0	0			REV__ENSG00000176170|ENST00000592299|SPHK1	REV__ENSG00000176170|ENST00000592299|SPHK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7948913574219	2	501.808377	1001.6022	-0.11783	-5.913E-05	-1.5368	-0.00077119	-1.6547	-0.00083032	501.80682085336736	50.473	0.33647	50.324	50.225	50.561	-0.14916					14	9	2	0	0	0	0.024541	1	5243	5243		18.324	0.95945	1	94720	+		23478	27002	16138	16175	27237	27237					0.10146343439453176
HSHLLALVL	9	Unmodified	_HSHLLALVL_					0	0	0			REV__ENSG00000176170|ENST00000592299|SPHK1	REV__ENSG00000176170|ENST00000592299|SPHK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.808377	1001.6022	0.22591	0.00011336	-2.3123	-0.0011603	-2.0864	-0.001047	501.8071794511971	50.057	0.11557	49.952	49.856	49.972	-0.10558	-0.18618	-0.00036061	NaN	17.365	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39727	+		23479	27002	16138	16175							0.10146343439453176
HSHQQPGQTEV	11	Unmodified	_HSHQQPGQTEV_					0	0	0		nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.9029541015625	3	416.530297	1246.56906	-0.23222	-9.6727E-05	0.23595	9.828E-05	0.0037291	1.5533E-06	416.5303909563264	32.659	1.3233	32.422	31.824	33.148	-0.23666					48	17	4	0	0	0	0.024736	1	2192	2192		14.086	0	1	836560			23480	8272	16139	16176	27238	27238					-0.04435935141214031
HSHQQPGQTEV	11	Unmodified	_HSHQQPGQTEV_					0	0	0		nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	416.530297	1246.56906	0.23567	9.8165E-05	-0.18155	-7.5619E-05	0.054127	2.2546E-05	416.5302192439726	32.742	0.80893	32.549	32.293	33.102	-0.19261	0.089134	-0.00023846	NaN	14.086	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	700120			23481	8272	16139	16176							-0.04435935141214031
HSHQQPGQTEV	11	Unmodified	_HSHQQPGQTEV_					0	0	0		nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	416.530297	1246.56906	-0.012223	-5.0913E-06	-0.11846	-4.9341E-05	-0.13068	-5.4432E-05	416.530190268399	32.566	0.7288	32.409	32.079	32.807	-0.15772	-0.051334	-0.00015962	NaN	14.086	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	727100			23482	8272	16139	16176							-0.04435935141214031
HSIEHELK	8	Unmodified	_HSIEHELK_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.30755615234375	2	496.761623	991.508694	-0.34365	-0.00017071	-1.172	-0.0005822	-1.5156	-0.00075291	496.76018243844277	22.129	0.42879	21.944	21.618	22.047	-0.18539					13	8	2	0	0	0	0.027866	1	748	748		31.955	14.59	1	31426	+		23483	20125	16140	16177	27239	27239					0.012599992663808735
HSIFTQQKL	9	Unmodified	_HSIFTQQKL_					0	0	0			REV__chr1:211946705-211951663|202|10.41|0.49|4.4|-|1|TE_info:MLT1A,MLT1A_dup531,ERVL-MaLR,LTR,donor,+,211951663,211951839|INTS7,None|2	REV__chr1:211946705-211951663|202|10.41|0.49|4.4|-|1|TE_info:MLT1A,MLT1A_dup531,ERVL-MaLR,LTR,donor,+,211951663,211951839|INTS7,None|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2920532226562	2	551.306198	1100.59784	-0.041242	-2.2737E-05	0.26147	0.00014415	0.22023	0.00012142	551.3060489679812	40.461	0.37603	40.461	40.247	40.623	0					18	10	3	0	0	0	0.024495	1	3581	3581		34.173	3.6689	1	615080	+		23484	19322	16141	16178	27240	27240					0.051568342258860866
HSILNAAIM	9	Unmodified	_HSILNAAIM_					0	0	0		PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-4|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.7667236328125	2	485.262945	968.511337	0.050957	2.4728E-05	-2.2928	-0.0011126	-2.2419	-0.0010879	485.2617882932783	27.401	0.29231	27.244	27.185	27.477	-0.15664					11	6	2	0	0	0	0.024457	1	1475	1475		21.96	0	1	378110			23485	19002;1695	16142	16179	27241	27241					0.02582131399674381
HSINLPFFET	10	Unmodified	_HSINLPFFET_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.55224609375	3	402.204751	1203.59242	-0.98281	-0.00039529	1.5124	0.00060828	0.52954	0.00021298	402.205264795722	56.244	0.49812	56.029	55.78	56.278	-0.21551					29	12	3	0	0	0	0.03519	1	6036	6036		20.03	0	1	359550			23486	1774;107	16143	16180	27242	27242					-0.0012288935658943956
HSISDSVLFLQ	11	Unmodified	_HSISDSVLFLQ_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.53399658203125	3	415.88731	1244.6401	-0.14094	-5.8617E-05	-1.8332	-0.0007624	-1.9741	-0.00082102	415.886442687677	20.053	0.8228	19.886	19.423	20.246	-0.16774					40	16	4	0	0	0	0.024731	1	462	462		24.232	17.911	1	529230			23487	5147	16144	16181	27243	27243					0.027567648436161107
HSISDSVLFLQ	11	Unmodified	_HSISDSVLFLQ_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	415.88731	1244.6401	0.6177	0.00025689	-2.1127	-0.00087865	-1.495	-0.00062176	415.8864528469931	20.194	0.83233	19.97	19.533	20.365	-0.22344	0.044457	0.0008761	NaN	24.232	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174910			23488	5147	16144	16181							0.027567648436161107
HSIYIQRETQ	10	Unmodified	_HSIYIQRETQ_					0	0	0		ZNF587B|p.Q69H|1|0.44|ENSG00000269343|chr19:57840881-57840881|G/C|missense_variant	ZNF587B|p.Q69H|1|0.44|ENSG00000269343|chr19:57840881-57840881|G/C|missense_variant	ZNF587B|p.Q69H|1|0.44|ENSG00000269343|chr19:57840881-57840881|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.1780090332031	3	425.554443	1273.6415	1.8308	0.0007791	-1.8215	-0.00077515	0.0092911	3.9539E-06	425.55360300110175	24.909	0.7319	24.737	24.427	25.159	-0.17151					43	16	4	0	0	0	0.03519	1	1121	1121		21.032	0	1	644950			23489	38200	16145	16182	27244	27244					0.015623989323785281
HSKAKPEQR	9	Unmodified	_HSKAKPEQR_					0	0	0		ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8329467773438	2	540.799072	1079.58359	0.14363	7.7676E-05	-1.4096	-0.00076233	-1.266	-0.00068465	540.799167365828	19.088	0.3459	18.928	18.688	19.034	-0.16079					10	6	2	0	0	0	0.024487	1	386	386		11.511	0	1	15580			23490	13528	16146	16183	27245	27245					0.046981817976075035
HSKEILRRK	9	Unmodified	_HSKEILRRK_					0	0	0		AP4E1|p.V184L|1|0.21|ENSG00000081014|chr15:50929016-50929016|G/T|missense_variant	AP4E1|p.V184L|1|0.21|ENSG00000081014|chr15:50929016-50929016|G/T|missense_variant	AP4E1|p.V184L|1|0.21|ENSG00000081014|chr15:50929016-50929016|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.8585815429688	2	583.859464	1165.70437	1.3634	0.00079603	-2.4333	-0.0014207	-1.0699	-0.00062467	583.8578996469528	97.062	1.11	97.062	96.705	97.815	-3.0518E-05					72	24	5	0	0	0	0.94809	1	12300	12300		29.15	0	1	1447700			23491	101	16147	16184	27246	27246					0.1281500951106409
HSKGYFLY	8	Unmodified	_HSKGYFLY_					0	0	0		ENST00000529131.5_1_9:72435824-72520897:+|nuORF	ENST00000529131.5_1_9:72435824-72520897:+|nuORF	ENST00000529131.5_1_9:72435824-72520897:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7882080078125	2	507.75581	1013.49707	-0.11023	-5.5969E-05	2.1814	0.0011076	2.0712	0.0010517	508.2595332151567	19.779	0.2799	19.779	19.6	19.88	0					8	5	2	0	0	0	0.027866	1	467	467		39.021	26.815	1	12604			23492	16201	16148	16185	27247	27247					-0.009141977569584014
HSKIHSIRSL	10	Unmodified	_HSKIHSIRSL_					0	0	0		ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1	ENSG00000152767|ENST00000319562|FARP1	ENSG00000152767|ENST00000319562|FARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3439331054688	2	589.343646	1176.67274	-2.3876	-0.0014071	1.117	0.00065827	-1.2707	-0.00074887	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0909	1	11580	11580		33.922	2.3918	1	4758600			23493	6297	16149	16186	27248	27248					0.09147016757151505
HSKKEVHRI	9	Unmodified	_HSKKEVHRI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.329833984375	2	567.330539	1132.64652	-1.643	-0.00093215	0.013669	7.7548E-06	-1.6294	-0.00092439	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.87448	1	11588	11588		34.173	3.8548	1	14057000	+		23494	24756;36782	16150	16187	27249	27249					0.0855074758567298
HSKKEVHRI	9	Unmodified	_HSKKEVHRI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3294067382812	2	567.330539	1132.64652	-0.43786	-0.00024841	-0.88397	-0.0005015	-1.3218	-0.00074991	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.94809	1	11165	11165		29.15	2.4566	1	4134200	+		23495	24756;36782	16150	16187	27250	27250					0.0855074758567298
HSKKEVHRI	9	Unmodified	_HSKKEVHRI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3295288085938	2	567.330539	1132.64652	-1.2298	-0.00069771	-0.35483	-0.00020131	-1.5846	-0.00089901	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	0.94809	1	11161	11161		29.15	1.2673	1	17705000	+		23496	24756;36782	16150	16187	27251	27251					0.0855074758567298
HSKKEVHRI	9	Unmodified	_HSKKEVHRI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3300170898438	2	567.330539	1132.64652	-0.39327	-0.00022312	-1.1254	-0.00063845	-1.5186	-0.00086157	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	0.89441	1	11489	11489		32.812	1.1781	1	19210000	+		23497	24756;36782	16150	16187	27252	27252					0.0855074758567298
HSKKEVHRI	9	Unmodified	_HSKKEVHRI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3296508789062	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.94809	1	11088	11088		29.15	0	1	18337000	+		23498	24756;36782	16150	16187	27253	27253					0.0855074758567298
HSKLRGLLP	9	Unmodified	_HSKLRGLLP_					0	0	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.83770751953125	2	510.819276	1019.624	-0.23902	-0.00012209	0.02731	1.3951E-05	-0.21171	-0.00010814	510.8191620204589	46.141	0.52744	46.141	45.885	46.412	0					32	14	3	0	0	0	0.024319	1	4502	4502		66.429	9.7082	1	511540			23499	5022	16151	16188	27254	27254					0.11497148188038864
HSKLRGLLP	9	Unmodified	_HSKLRGLLP_					0	0	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8367919921875	2	510.819276	1019.624	-1.1194	-0.00057182	0.11541	5.8951E-05	-1.004	-0.00051287	510.8196431223507	46.201	0.52081	46.049	45.823	46.344	-0.15157					41	14	4	0	0	0	0.024344	1	4492	4492		54.776	15.523	1	547030			23500	5022	16151	16188	27255	27255					0.11497148188038864
HSKPGRPA	8	Unmodified	_HSKPGRPA_					0	0	0		ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.238525390625	2	425.238119	848.461684	0.63631	0.00027058	-0.39293	-0.00016709	0.24338	0.00010349	425.2378110704775	21.901	0.76335	21.721	21.347	22.11	-0.18031					27	15	2	0	0	0	0.96719	1	726	726		42.474	0	1	539000			23501	11526	16152	16189	27256	27256					0.031391845059033585
HSKPGRPA	8	Unmodified	_HSKPGRPA_					0	0	0		ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.238119	848.461684	-1.0036	-0.00042678	4.8589	0.0020662	3.8552	0.0016394	425.2386348133383	21.673	0.71923	21.673	21.293	22.012	0	-0.058045	0.0037896	NaN	42.474	46	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149950			23502	11526	16152	16189							0.031391845059033585
HSKPGRPA	8	Unmodified	_HSKPGRPA_					0	0	0		ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	425.238119	848.461684	-0.45697	-0.00019432	4.2981	0.0018277	3.8411	0.0016334	425.2383407553871	21.765	0.76453	21.675	21.255	22.02	-0.090092	-0.055637	0.0033127	NaN	42.474	51	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148210			23503	11526	16152	16189							0.031391845059033585
HSKPGRPA	8	Unmodified	_HSKPGRPA_					0	0	0		ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	ENST00000263275.4_2_19:46056483-46056753:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	425.238119	848.461684	-0.30762	-0.00013081	0.56771	0.00024141	0.2601	0.0001106	425.23823245590995	21.648	0.57703	21.72	21.401	21.978	0.071489	-0.010985	0.00014005	NaN	42.474	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112720			23504	11526	16152	16189							0.031391845059033585
HSKSIRYEVQ	10	Unmodified	_HSKSIRYEVQ_					0	0	0			REV__ENST00000525968.1_1_11:73984627-74015361:-|nuORF	REV__ENST00000525968.1_1_11:73984627-74015361:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.87908935546875	3	416.222805	1245.64658	-0.63936	-0.00026612	1.7451	0.00072636	1.1058	0.00046025	416.2234393653078	30.63	0.62747	30.452	30.203	30.831	-0.17817					24	14	2	0	0	0	0.03519	1	1973	1973		7.6794	0.33806	1	153010	+		23505	34424	16153	16190	27257	27257					0.0335870279500341
HSKVHGGK	8	Unmodified	_HSKVHGGK_					0	0	0			REV__ENSG00000256525|ENST00000539111|POLG2	REV__ENSG00000256525|ENST00000539111|POLG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.2388916015625	2	425.238119	848.461684	-0.15153	-6.4437E-05	0.52022	0.00022122	0.36869	0.00015678	425.23819483810547	22.056	0.93948	21.865	21.516	22.455	-0.19072					31	19	2	0	0	0	0.96769	1	733	733		42.396	8.2236	1	593070	+		23506	29081	16154	16191	27258	27258					0.03139184505914727
HSKVHGGK	8	Unmodified	_HSKVHGGK_					0	0	0			REV__ENSG00000256525|ENST00000539111|POLG2	REV__ENSG00000256525|ENST00000539111|POLG2	MSMS	OPSCC_40_ClassI_Rep-3	6	425.23870849609375	2	425.238119	848.461684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.924	1	21.722	21.222	22.222	-0.20199								0	0	0	0.63389	1	702	702		45.952	3.4775	1		+		23507	29081	16154	16191	27259	27259					0.03139184505914727
HSKVIAIYH	9	Unmodified	_HSKVIAIYH_					0	0	0			REV__ENSG00000152484|ENST00000282344|USP12	REV__ENSG00000152484|ENST00000282344|USP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.28466796875	2	534.303458	1066.59236	-1.403	-0.00074961	-3.01	-0.0016083	-4.413	-0.0023579	534.3017253355463	37.715	0.75914	37.715	37.343	38.102	0					46	21	3	0	0	0	0.024497	1	3151	3151		28.254	15.295	1	517860	+		23508	24845	16155	16192	27260	27260					0.061731554340894945
HSKVLVALL	9	Unmodified	_HSKVLVALL_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.80255126953125	2	490.318577	978.622602	-1.0075	-0.00049398	0.82686	0.00040543	-0.1806	-8.8553E-05	490.31880065164637	25.533	0.41521	25.306	25.061	25.476	-0.22683					24	9	3	0	0	0	0.024294	1	1200	1200		29.15	1.2673	1	459760	+		23509	27707	16156	16193	27261	27261					0.13243514099281128
HSLAEMAL	8	Unmodified	_HSLAEMAL_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8815612792969	2	436.220746	870.426938	-0.38874	-0.00016957	-0.24662	-0.00010758	-0.63535	-0.00027715	436.2198791726835	40.273	0.23181	40.043	39.851	40.083	-0.23021					9	5	2	0	0	0	0.027866	1	3449	3449		25.45	8.0852	1	66108	+		23510	27726	16157	16194	27262	27262					-0.013458194170766546
HSLAHLASW	9	Unmodified	_HSLAHLASW_					0	0	0			REV__ENST00000494370.1_1_2:46803744-46803927:+|nuORF	REV__ENST00000494370.1_1_2:46803744-46803927:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2533569335938	2	511.264333	1020.51411	-0.16779	-8.5787E-05	0.066193	3.3842E-05	-0.1016	-5.1945E-05	511.2639110195739	54.39	0.67509	54.144	53.804	54.479	-0.2453					57	20	4	0	0	0	0.024381	1	5769	5769		29.15	0	1	2788900	+		23511	33781	16158	16195	27263	27263					0.004677228488503715
HSLFQVID	8	Unmodified	_HSLFQVID_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.27734375	2	479.753267	957.491981	0.51183	0.00024555	-0.97568	-0.00046809	-0.46385	-0.00022253	479.7504159216173	83.987	0.3905	83.818	83.575	83.965	-0.16915					13	8	2	0	0	0	0.027866	1	10149	10149		16.473	0	1	25219			23512	8336	16159	16196	27264	27264					0.01153498380426754
HSLHELEKG	9	Unmodified	_HSLHELEKG_					0	0	0			REV__ENSG00000163634|ENST00000295899|THOC7	REV__ENSG00000163634|ENST00000295899|THOC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2947387695312	2	525.272355	1048.53016	-0.80653	-0.00042365	0.020199	1.061E-05	-0.78633	-0.00041304	525.2721846313161	29.834	1.0489	29.843	29.282	30.331	0.0086689					61	25	5	0	0	0	0.024427	1	1847	1847		34.173	7.4796	1	777930	+		23513	25606	16160	16197	27265	27265					0.00783384295095857
HSLHELEKG	9	Unmodified	_HSLHELEKG_					0	0	0			REV__ENSG00000163634|ENST00000295899|THOC7	REV__ENSG00000163634|ENST00000295899|THOC7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	525.272355	1048.53016	-1.9793	-0.0010397	1.1251	0.00059099	-0.85414	-0.00044866	525.272848421874	29.919	0.88829	29.919	29.37	30.258	0	0.11388	0.00090106	NaN	19.997	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	738010	+		23514	25606	16160	16197							0.00783384295095857
HSLHELEKG	9	Unmodified	_HSLHELEKG_					0	0	0			REV__ENSG00000163634|ENST00000295899|THOC7	REV__ENSG00000163634|ENST00000295899|THOC7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.272355	1048.53016	-0.69357	-0.00036431	-0.36389	-0.00019114	-1.0575	-0.00055545	525.2720097464766	29.576	0.91618	29.654	29.091	30.007	0.078344	-0.15119	-0.00066321	NaN	19.997	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890900	+		23515	25606	16160	16197							0.00783384295095857
HSLINNFVK	9	Unmodified	_HSLINNFVK_					0	0	0		nc|ENSG00000176714|Q6ZUS5-2|CCDC121	nc|ENSG00000176714|Q6ZUS5-2|CCDC121	nc|ENSG00000176714|Q6ZUS5-2|CCDC121	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2737426757812	2	536.300916	1070.58728	-0.66848	-0.00035851	-1.8953	-0.0010165	-2.5638	-0.001375	536.2998834284911	36.571	0.61735	36.571	36.229	36.846	0					28	16	2	0	0	0	0.024436	1	2952	2952		23.042	0	1	686160			23516	18540	16161	16198	27266	27266					0.054808515714512396
HSLKFGKG	8	Unmodified	_HSLKFGKG_					0	0	0		ENST00000413474.5_1_3:195709184-195712605:-|nuORF;ENST00000457233.5_1_3:195390605-195393086:+|nuORF;ENST00000440850.5_1_3:195704061-195712605:-|nuORF	ENST00000413474.5_1_3:195709184-195712605:-|nuORF	ENST00000413474.5_1_3:195709184-195712605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8810729980469	2	437.250695	872.486836	0.37905	0.00016574	1.3654	0.00059703	1.7445	0.00076276	437.2520683314799	39.732	0.75349	39.502	38.869	39.623	-0.23021					19	19	2	0	0	0	0.027866	1	3351	3351		35.618	15.136	1	101860			23517	13844	16162	16199	27267	27267					0.04549239308471442
HSLKPLFTL	9	Unmodified	_HSLKPLFTL_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3134155273438	2	528.316035	1054.61752	0.21443	0.00011328	-3.4835	-0.0018404	-3.2691	-0.0017271	528.3143449651923	97.311	1.1074	97.32	96.663	97.77	0.0089111					50	24	3	0	0	0	0.97455	1	12373	12373		25.574	1.3713	1	240920	+		23518	28266	16163	16200	27268	27268					0.09239210236660256
HSLLEVKVY	9	Unmodified	_HSLLEVKVY_					0	0	0			REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8294067382812	2	544.310949	1086.60735	-0.15836	-8.6195E-05	3.5222	0.0019172	3.3639	0.001831	544.3121740285006	75.18	0.70419	74.904	74.479	75.183	-0.27573					33	16	3	0	0	0	0.024436	1	8823	8823		30.504	8.5438	1	157290	+		23519	36508	16164	16201	27269	27269					0.06750602511442594
HSLLEVKVY	9	Unmodified	_HSLLEVKVY_					0	0	0			REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8296508789062	2	544.310949	1086.60735	-0.44526	-0.00024236	1.6833	0.00091625	1.2381	0.00067389	544.3119942803858	75.636	1.1408	75.378	74.494	75.634	-0.25865					36	27	2	0	0	0	0.024506	1	8841	8841		16.473	0	1	222110	+		23520	36508	16164	16201	27270	27270					0.06750602511442594
HSLLLCGK	8	Unmodified	_HSLLLCGK_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.5228576660156	2	435.746931	869.479308	0.62139	0.00027077	1.3097	0.0005707	1.9311	0.00084148	435.7454286372194	48.088	0.22705	47.901	47.825	48.052	-0.18684					7	5	2	0	0	0	0.027866	1	4729	4729		7.6903	3.705	1	45122	+	+	23521	19526	16165	16202	27271	27271					0.03934763716540601
HSLQTHTSF	9	Unmodified	_HSLQTHTSF_					0	0	0			REV__ENST00000272849.7_2_2:206642940-206643144:+|nuORF	REV__ENST00000272849.7_2_2:206642940-206643144:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2584228515625	2	529.256705	1056.49886	2.8397	0.001503	0.34685	0.00018357	3.1866	0.0016865	529.2567023153539	16.964	0.34401	16.964	16.807	17.151	0					19	8	3	0	0	0	0.4752	1	113	113		60.972	7.6205	1	60575	+		23522	29816	16166	16203	27272	27272					-0.02713188739016914
HSLQTHTSF	9	Unmodified	_HSLQTHTSF_					0	0	0			REV__ENST00000272849.7_2_2:206642940-206643144:+|nuORF	REV__ENST00000272849.7_2_2:206642940-206643144:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	529.256705	1056.49886	2.8397	0.001503	0.34685	0.00018357	3.1866	0.0016865	529.2567023153539	16.964	0.34401	16.964	16.807	17.151	0	0.0087623	-0.0012784	NaN	60.972	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60575	+		23523	29816	16166	16203							-0.02713188739016914
HSMFCINNK	9	Unmodified	_HSMFCINNK_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.2767944335938	2	547.249511	1092.48447	-1.386	-0.00075847	-2.9718	-0.0016263	-4.3578	-0.0023848	547.2486710988833	30.428	0.57963	30.502	30.296	30.875	0.074314					22	13	4	0	0	0	0.024477	1	1938	1938		27.882	0	1	53987	+		23524	24489	16167	16204	27273	27273					-0.05807300483161271
HSMFPLHLA	9	Unmodified	_HSMFPLHLA_					0	0	0		nc|ENSG00000065413|Q8N8A2-3|ANKRD44;ANKRD44|p.F627Cfs*17|1|0.27|ENSG00000065413|chr2:197013554-197013555|AA/-|frameshift_variant;nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-3|ANKRD44	nc|ENSG00000065413|Q8N8A2-3|ANKRD44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3549194335938	2	526.770937	1051.52732	-0.28904	-0.00015226	1.8544	0.00097686	1.5654	0.00082461	526.7716003815511	50.336	0.8316	50.185	49.924	50.755	-0.1512					50	24	3	0	0	0	0.024357	1	5261	5261		35.201	0	1	725780			23525	98	16168	16205	27274	27274					0.0036183763659209944
HSMIHLESI	9	Unmodified	_HSMIHLESI_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2823486328125	2	533.771134	1065.52771	-0.98349	-0.00052496	-0.015861	-8.466E-06	-0.99935	-0.00053342	533.7710687585479	38.833	0.87634	38.833	38.515	39.391	0					41	17	3	0	0	0	0.02435	1	3293	3293		34.173	6.2903	1	568620	+		23526	26356	16169	16206	27275	27275					-0.0024278743421746185
HSMIHLESI	9	Unmodified	_HSMIHLESI_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.771134	1065.52771	-0.90465	-0.00048288	-0.079235	-4.2293E-05	-0.98389	-0.00052517	533.7710826460415	38.853	0.79789	38.755	38.437	39.234	-0.098755	-0.12844	-8.498E-05	NaN	26.693	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483510	+		23527	26356	16169	16206							-0.0024278743421746185
HSMMLLLKP	9	Unmodified	_HSMMLLLKP_					0	0	0		ENST00000395841.6_1_20:55931574-55941920:+|nuORF	ENST00000395841.6_1_20:55931574-55941920:+|nuORF	ENST00000395841.6_1_20:55931574-55941920:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2586059570312	2	535.298473	1068.58239	-0.54322	-0.00029079	-0.45453	-0.00024331	-0.99775	-0.00053409	535.2982477043394	53.489	1.1261	53.489	52.673	53.799	0					57	30	3	0	0	0	0.024374	1	5792	5792		40.778	0	1	1355200			23528	13532	16170	16207	27276	27276					0.05084508112872754
HSMMLLLKP	9	Unmodified	_HSMMLLLKP_					0	0	0		ENST00000395841.6_1_20:55931574-55941920:+|nuORF	ENST00000395841.6_1_20:55931574-55941920:+|nuORF	ENST00000395841.6_1_20:55931574-55941920:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.298473	1068.58239	-0.22817	-0.00012214	4.3479	0.0023274	4.1197	0.0022053	535.3019164043741	53.345	0.33469	53.087	53	53.335	-0.25838	-0.2812	0.004632	NaN	47.657	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45993			23529	13532	16170	16207							0.05084508112872754
HSMVADRYQ	9	Unmodified	_HSMVADRYQ_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7559204101562	2	553.756015	1105.49748	0.61112	0.00033841	-1.1299	-0.00062572	-0.51883	-0.00028731	553.755334147411	22.588	2.6047	22.386	22.097	24.702	-0.20199					99	58	4	0	0	0	0.89441	1	785	785		32.812	2.3088	1	1088400	+		23530	22359	16171	16208	27277	27277					-0.05105146099413105
HSPAWGELE	9	Unmodified	_HSPAWGELE_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.795166015625	2	513.237981	1024.46141	-1.2328	-0.00063271	-1.9466	-0.00099908	-3.1794	-0.0016318	513.2368734604412	37.802	0.58	37.72	37.503	38.083	-0.082512					33	16	3	0	0	0	0.024292	1	3159	3159		58.782	2.0609	1	878020	+		23531	21702	16172	16209	27278	27278					-0.049842800046235425
HSPHTMALQLL	11	Unmodified	_HSPHTMALQLL_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.5580139160156	3	416.557019	1246.64923	0.045916	1.9127E-05	2.9188	0.0012158	2.9647	0.001235	416.5581757211994	24.496	0.71113	24.496	24.253	24.964	0					27	15	2	0	0	0	0.98082	1	1077	1077		41.08	2.3265	1	714970	+		23532	22062	16173	16210	27279	27279					0.035768349283216594
HSPHTMALQLL	11	Unmodified	_HSPHTMALQLL_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	416.557019	1246.64923	0.045916	1.9127E-05	2.9188	0.0012158	2.9647	0.001235	416.5581757211994	24.496	0.71113	24.496	24.253	24.964	0	0.0064149	-0.00039762	NaN	41.08	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	714970	+		23533	22062	16173	16210							0.035768349283216594
HSPLDSKKQTS	11	Unmodified	_HSPLDSKKQTS_					0	0	0		SPHKAP|p.E1404Q|1|0.21|ENSG00000153820|chr2:228016644-228016644|C/G|missense_variant	SPHKAP|p.E1404Q|1|0.21|ENSG00000153820|chr2:228016644-228016644|C/G|missense_variant	SPHKAP|p.E1404Q|1|0.21|ENSG00000153820|chr2:228016644-228016644|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.182861328125	3	409.882448	1226.62551	0.095464	3.9129E-05	-4.1095	-0.0016844	-4.014	-0.0016453	409.8805047149145	25.562	0.86589	25.392	24.869	25.735	-0.17078					38	20	3	0	0	0	0.02476	1	1155	1155		61.765	30.13	1	161880			23534	37961	16174	16211	27280	27280					0.02126692695469501
HSPPFQTIN	9	Unmodified	_HSPPFQTIN_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.8572998046875	2	520.761623	1039.50869	0.071986	3.7487E-05	-0.91352	-0.00047573	-0.84154	-0.00043824	520.7604931884649	75.856	0.40906	75.868	75.681	76.09	0.011635					14	10	2	0	0	0	0.024209	1	9260	9260		66.429	0	1	149050			23535	1711	16175	16212	27281	27281					-0.009480007336151175
HSPPRKGA	8	Unmodified	_HSPPRKGA_					0	0	0		ENST00000599109.5_1_19:58870618-58870666:-|nuORF	ENST00000599109.5_1_19:58870618-58870666:-|nuORF	ENST00000599109.5_1_19:58870618-58870666:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.2387390136719	2	425.238119	848.461684	-0.15153	-6.4437E-05	0.52022	0.00022122	0.36869	0.00015678	425.23819483810547	22.056	0.93948	21.865	21.516	22.455	-0.19072					31	19	2	0	0	0	1.0239	1	743	743		33.516	0	1	593070			23536	17486	16176	16213	27282	27282					0.031391845059033585
HSPRRRGR	8	Unmodified	_HSPRRRGR_					0	0	0			REV__ENST00000415298.5_1_2:224642518-224702333:-|nuORF	REV__ENST00000415298.5_1_2:224642518-224702333:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.3052673339844	2	511.297365	1020.58018	2.1371	0.0010927	4.099	0.0020958	6.2361	0.0031885	511.2988302540885	18.989	0.39544	18.756	18.533	18.928	-0.23345					9	7	2	0	0	0	0.027866	1	358	358		12.959	0	1	14882	+		23537	32050	16177	16214	27283	27283					0.07070976534282636
HSPRTGRTR	9	Unmodified	_HSPRTGRTR_					0	0	0		ENST00000527970.1_1_11:3529496-3602314:-|nuORF	ENST00000527970.1_1_11:3529496-3602314:-|nuORF	ENST00000527970.1_1_11:3529496-3602314:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3318481445312	2	534.294488	1066.57442	-1.5408	-0.00082324	3.7556	0.0020066	2.2148	0.0011834	534.2963349899156	44.174	0.81945	44.174	43.872	44.691	0					63	23	4	0	0	0	0.024457	1	4216	4216		29.15	8.2026	1	1644200			23538	16170	16178	16215	27284	27284					0.04379833231928387
HSPSDSVKT	9	Unmodified	_HSPSDSVKT_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30548095703125	2	479.235439	956.456324	-0.34066	-0.00016326	1.165	0.00055833	0.82438	0.00039507	479.2358806047769	31.837	0.32439	31.906	31.726	32.051	0.068962					10	7	2	0	0	0	0.024495	1	2124	2124		14.137	0	1	65695	+		23539	19887	16179	16216	27285	27285					-0.023645838672223363
HSQDHHLAVLQ	11	Unmodified	_HSQDHHLAVLQ_					0	0	0		ENST00000568395.1_1_16:2722512-2723398:-|nuORF	ENST00000568395.1_1_16:2722512-2723398:-|nuORF	ENST00000568395.1_1_16:2722512-2723398:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.8706970214844	3	428.886304	1283.63708	0.59793	0.00025644	-3.0033	-0.0012881	-2.4053	-0.0010316	428.8856560620799	36.875	0.43105	36.682	36.496	36.927	-0.193					16	10	2	0	0	0	0.024774	1	2939	2939		37.6	15.038	1	91583			23540	16980	16180	16217	27286	27286					0.006609345094602759
HSQDTQLIQL	10	Unmodified	_HSQDTQLIQL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	591.81201171875	2	591.809302	1181.60405	-0.22067	-0.00013059	3.6375	0.0021527	3.4168	0.0020221	591.8113856715833	96.408	1.0382	96.415	96.107	97.146	0.0065002					64	23	5	0	0	0	0.6365	1	12247	12247		72.879	2.063	1	953420	+		23541	25017	16181	16218	27287	27287					0.020513076667839414
HSQDTQLIQL	10	Unmodified	_HSQDTQLIQL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.8111572265625	2	591.809302	1181.60405	1.3439	0.00079532	2.0707	0.0012254	3.4145	0.0020207	591.8104171066905	96.501	1.0438	96.503	96.194	97.237	0.0020676					67	23	4	0	0	0	0.21865	3	12234	12234;12246;12272		118.74	8.756	1	919760	+		23542	25017	16181	16218	27288;27289;27290	27288					0.020513076667839414
HSQDTQLIQL	10	Unmodified	_HSQDTQLIQL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	591.809302	1181.60405	-0.22067	-0.00013059	3.6375	0.0021527	3.4168	0.0020221	591.8113856715833	96.408	1.0382	96.415	96.107	97.146	0.0065002	-0.060238	-7.2145E-05	NaN	118.74	64	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953420	+		23543	25017	16181	16218							0.020513076667839414
HSQIRDPQ	8	Unmodified	_HSQIRDPQ_					0	0	0		ENST00000596765.5_1_19:50165795-50166512:-|nuORF;nc|ENSG00000126456|Q14653-5|IRF3	ENST00000596765.5_1_19:50165795-50166512:-|nuORF	ENST00000596765.5_1_19:50165795-50166512:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.3135986328125	2	490.749047	979.483542	-0.13707	-6.7267E-05	1.2657	0.00062115	1.1286	0.00055388	490.7491230836668	29.096	0.558	28.946	28.529	29.087	-0.14952					16	12	2	0	0	0	0.027866	1	1704	1704		54.776	0	1	66934			23544	17438	16182	16219	27291	27291					-0.00702055536203261
HSQRHPTPM	9	Unmodified	_HSQRHPTPM_					0	0	0		ENST00000576156.1_1_17:79871830-79872373:-|nuORF	ENST00000576156.1_1_17:79871830-79872373:-|nuORF	ENST00000576156.1_1_17:79871830-79872373:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.8154907226562	2	545.764175	1089.5138	-0.32798	-0.000179	0.50742	0.00027693	0.17944	9.7931E-05	545.7647385665343	18.01	0.44184	17.878	17.712	18.154	-0.13147					13	8	2	0	0	0	0.024541	1	207	207		19.997	0	1	9592.3			23545	17107	16183	16220	27292	27292					-0.02738020142669484
HSQRHSLL	8	Unmodified	_HSQRHSLL_					0	0	0		nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2519226074219	2	489.267407	976.520262	-0.87831	-0.00042973	1.191	0.0005827	0.31265	0.00015297	489.2673639418707	64.932	0.7436	64.932	64.311	65.055	0					28	19	2	0	0	0	0.027866	1	7674	7674		31.955	0	1	116750			23546	1301	16184	16221	27293	27293					0.031062410803883722
HSRFHKNL	8	Unmodified	_HSRFHKNL_					0	0	0			REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.304931640625	2	519.783225	1037.5519	-0.34712	-0.00018042	3.8587	0.0020057	3.5116	0.0018253	519.7850331385007	93.773	0.49263	93.773	93.515	94.007	0					22	11	3	0	0	0	0.027866	1	11895	11895		63.306	20.91	1	155510	+		23547	20744	16185	16222	27294	27294					0.034622338343069714
HSRLEEEEL	9	Unmodified	_HSRLEEEEL_					0	0	0			REV__nc|ENSG00000182923|Q96MT8-2|CEP63	REV__nc|ENSG00000182923|Q96MT8-2|CEP63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.3106079101562	2	571.277835	1140.54112	0.17401	9.9407E-05	-3.2878	-0.0018783	-3.1138	-0.0017789	571.2761370284709	74.821	0.3284	74.558	74.404	74.732	-0.26326					10	7	2	0	0	0	0.02435	1	8849	8849		34.173	7.4796	1	51142	+		23548	27520	16186	16223	27295	27295					-0.023532581212748482
HSRLFDVAD	9	Unmodified	_HSRLFDVAD_					0	0	0			REV__EPS8L2|p.G382S|1|0.23|ENSG00000177106|chr11:722485-722485|G/A|missense_variant	REV__EPS8L2|p.G382S|1|0.23|ENSG00000177106|chr11:722485-722485|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	530.26453	1058.51451	-0.91383	-0.00048457	0.076648	4.0644E-05	-0.83718	-0.00044393	530.264812201729	40.083	0.25746	40.106	39.942	40.199	0.023006					10	6	2	0	0	0	0.024477	1	3424	3424		27.882	0	1	112400	+		23549	36007	16187	16224	27296	27296					-0.012409022219571852
HSRLKLSGG	9	Unmodified	_HSRLKLSGG_					0	0	0			REV__ENST00000571688.5_2_16:11643018-11643147:-|nuORF	REV__ENST00000571688.5_2_16:11643018-11643147:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3057556152344	2	477.777608	953.540663	0.86266	0.00041216	-3.5141	-0.0016789	-2.6514	-0.0012668	477.77556349457217	19.057	0.74261	18.896	18.49	19.233	-0.16079					24	14	2	0	0	0	0.0245	1	337	337		22.58	0.61977	1	115280	+		23550	35410	16188	16225	27297	27297					0.06203411740193587
HSRLKLSGG	9	Unmodified	_HSRLKLSGG_					0	0	0			REV__ENST00000571688.5_2_16:11643018-11643147:-|nuORF	REV__ENST00000571688.5_2_16:11643018-11643147:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.777608	953.540663	2.1453	0.001025	-2.1138	-0.0010099	0.031434	1.5018E-05	477.77633349511456	19.125	0.44456	18.892	18.682	19.126	-0.23345	0.043693	0.00022251	NaN	22.58	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79804	+		23551	35410	16188	16225							0.06203411740193587
HSRPIVTVW	9	Unmodified	_HSRPIVTVW_					0	0	0		ENST00000590898.5_1_18:33620811-33647397:-|nuORF;ENSG00000141425|ENST00000399022|RPRD1A	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2869873046875	2	547.808908	1093.60326	-0.69457	-0.00038049	-0.36378	-0.00019928	-1.0584	-0.00057978	547.8086130036378	48.018	0.65898	47.742	47.492	48.151	-0.27598					40	17	3	0	0	0	0.024261	1	4735	4735		54.776	0	1	608090			23552	5489	16189	16226	27298	27298					0.06020557808369631
HSRPIVTVW	9	Unmodified	_HSRPIVTVW_					0	0	0		ENST00000590898.5_1_18:33620811-33647397:-|nuORF;ENSG00000141425|ENST00000399022|RPRD1A	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2868041992188	2	547.808908	1093.60326	-0.05366	-2.9395E-05	-0.74661	-0.000409	-0.80027	-0.00043839	547.808319898284	47.853	0.62818	47.666	47.423	48.052	-0.18684					39	16	3	0	0	0	0.024418	1	4705	4705		45.972	0	1	564210			23553	5489	16189	16226	27299	27299					0.06020557808369631
HSRRSEKKS	9	Unmodified	_HSRRSEKKS_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3355712890625	2	557.807428	1113.6003	0.13014	7.2594E-05	-2.3382	-0.0013043	-2.2081	-0.0012317	557.8067352814893	19.624	0.24684	19.463	19.331	19.578	-0.1608					7	4	2	0	0	0	0.024344	1	437	437		45.972	6.7194	1	11806			23554	9957	16190	16227	27300	27300					0.04804682683561623
HSRSSSRRVF	10	Unmodified	_HSRSSSRRVF_					0	0	0			REV__ENSG00000149527|ENST00000378486|PLCH2	REV__ENSG00000149527|ENST00000378486|PLCH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.87908935546875	3	406.886527	1217.63775	1.6446	0.00066918	3.6376	0.0014801	5.2823	0.0021493	406.88823830902135	20.2	0.18703	20.004	19.901	20.088	-0.19577					7	3	3	0	0	0	0.03519	1	520	520		42.338	0	1	32138	+		23555	24685	16191	16228	27301	27301					0.03763773949162896
HSSDWPKF	8	Unmodified	_HSSDWPKF_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2491455078125	2	502.235242	1002.45593	0.24369	0.00012239	1.9009	0.00095471	2.1446	0.0010771	502.2360430681663	104.87	0.4866	104.87	104.6	105.09	0					28	16	2	0	0	0	0.027866	1	13470	13470		25.45	6.0902	1	110930			23556	1846	16192	16229	27302	27302					-0.04519958796424817
HSSGIKQDI	9	Unmodified	_HSSGIKQDI_					0	0	0		ENSG00000163645|ENST00000295910|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;nc|ENSG00000163645|Q7L0X2-3|ERICH6	ENSG00000163645|ENST00000295910|ERICH6	ENSG00000163645|ENST00000295910|ERICH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.8009948730469	2	492.759081	983.503609	-0.5852	-0.00028836	1.0454	0.00051511	0.46016	0.00022675	492.759524816376	36.179	0.96828	36.217	35.61	36.579	0.038044					47	26	2	0	0	0	0.02435	1	2794	2794		42.396	0	1	576590			23557	7125	16193	16230	27303	27303					0.01119695403770038
HSSPMVKS	8	Unmodified	_HSSPMVKS_					0	0	0		ENST00000471732.5_1_7:14758167-14775789:-|nuORF;ENST00000477401.5_1_7:14660999-14880939:-|nuORF;ENST00000403963.5_1_7:14249142-14880939:-|nuORF;nc|ENSG00000136267|Q9Y6T7-2|DGKB;ENSG00000136267|ENST00000402815|DGKB;nc|ENSG00000136267|Q9Y6T7|DGKB	ENST00000471732.5_1_7:14758167-14775789:-|nuORF	ENST00000471732.5_1_7:14758167-14775789:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.7926940917969	2	436.71837	871.422187	-0.13504	-5.8974E-05	-1.5115	-0.00066008	-1.6465	-0.00071906	436.71717298613675	32.994	0.40004	32.829	32.638	33.038	-0.16565					13	9	2	0	0	0	0.027866	1	2328	2328		29.15	8.2026	1	38560			23558	5002	16194	16231	27304	27304					-0.018667035598241455
HSSRSSQALVF	11	Unmodified	_HSSRSSQALVF_					0	0	0		chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|26	chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|26	chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.87969970703125	3	406.879038	1217.61528	0.386	0.00015705	-1.7972	-0.00073125	-1.4112	-0.00057419	406.8778364532396	20.056	1.7952	19.888	19.423	21.219	-0.16774					91	36	6	0	0	0	0.98625	1	528	528		39.873	8.805	1	2785500			23559	432	16195	16232	27305	27305					0.01518129760870579
HSSRSSQALVF	11	Unmodified	_HSSRSSQALVF_					0	0	0		chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|26	chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|26	chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.87841796875	3	406.879038	1217.61528	1.6343	0.00066496	-3.7497	-0.0015257	-2.1154	-0.00086073	406.87726413832445	20.138	1.2696	19.939	19.507	20.776	-0.19843					89	25	5	0	0	0	0.95317	1	496	496		47.228	3.5769	1	2716700			23560	432	16195	16232	27306	27306					0.01518129760870579
HSSRYNFAFS	10	Unmodified	_HSSRYNFAFS_					0	0	0		ENST00000466647.5_1_9:102861593-102977308:+|nuORF	ENST00000466647.5_1_9:102861593-102977308:+|nuORF	ENST00000466647.5_1_9:102861593-102977308:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.92291259765625	3	405.856233	1214.54687	-0.54104	-0.00021958	-2.0877	-0.00084729	-2.6287	-0.0010669	405.85531615133215	27.108	0.80524	26.952	26.672	27.477	-0.15664					27	18	2	0	0	0	0.03519	1	1427	1427		32.034	4.9868	1	103860			23561	14818	16196	16233	27307	27307					-0.051821148189674204
HSSSHLDSSQQ	11	Unmodified	_HSSSHLDSSQQ_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	404.846174	1211.51669	-1.0285	-0.00041639	0.064978	2.6306E-05	-0.96354	-0.00039009	405.18066070132414	26.453	0.14527	26.289	26.199	26.344	-0.16331					5	3	2	0	0	0	0.024742	1	1353	1353		38.714	23.381	1	29625	+		23562	20736	16197	16234	27308	27308					-0.08060518274805872
HSSTGMKL	8	Unmodified	_HSSTGMKL_					0	0	0			REV__ENST00000470121.5_1_3:156866032-156869342:-|nuORF	REV__ENST00000470121.5_1_3:156866032-156869342:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.6986389160156	2	430.71837	859.422187	-0.67147	-0.00028921	-1.2673	-0.00054583	-1.9387	-0.00083505	430.7178098661713	33.116	0.1941	33.116	32.941	33.135	0					5	4	2	0	0	0	0.027866	1	2347	2347		60.294	26.121	1	46803	+		23563	33147	16198	16235	27309	27309					-0.013147035598308321
HSTATHGE	8	Unmodified	_HSTATHGE_					0	0	0		ENSG00000205835|ENST00000442080|GMNC	ENSG00000205835|ENST00000442080|GMNC	ENSG00000205835|ENST00000442080|GMNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.240478515625	2	420.185749	838.356944	0.20469	8.6007E-05	0.98229	0.00041274	1.187	0.00049875	420.1859855337937	23.926	0.13437	23.71	23.599	23.733	-0.2151					4	2	2	0	0	0	0.027866	1	994	994		31.955	0	1	19848			23564	10448	16199	16236	27310	27310					-0.06869981761315103
HSTCLSEGAL	10	Unmodified	_HSTCLSEGAL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.30029296875	2	509.237124	1016.45969	-0.052537	-2.6754E-05	0.82459	0.00041991	0.77205	0.00039316	509.23744287553757	47.568	0.52105	47.299	46.977	47.498	-0.26939					22	13	2	0	0	0	0.03519	1	4649	4649		42.396	8.2236	1	224620			23565	1052	16200	16237	27311	27311					-0.04787657084887087
HSTKWLKS	8	Unmodified	_HSTKWLKS_					0	0	0			REV__ENST00000566699.1_1_7:139877068-139877485:+|nuORF	REV__ENST00000566699.1_1_7:139877068-139877485:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2874450683594	2	493.774534	985.534515	-0.55691	-0.00027499	2.1063	0.00104	1.5494	0.00076504	493.7755963440143	29.741	0.28222	29.746	29.553	29.835	0.0048847					7	6	2	0	0	0	0.027866	1	1844	1844		29.15	9.7896	1	24838	+		23566	35306	16201	16238	27312	27312					0.04116893508660269
HSTLRKAQV	9	Unmodified	_HSTLRKAQV_					0	0	0		chr2:206530948-206547429|109|14.55|0.08|7.58|+|1|ADAM23,ADAM23|1	chr2:206530948-206547429|109|14.55|0.08|7.58|+|1|ADAM23,ADAM23|1	chr2:206530948-206547429|109|14.55|0.08|7.58|+|1|ADAM23,ADAM23|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3046264648438	2	520.30399	1038.59343	-0.57988	-0.00030171	2.7326	0.0014218	2.1527	0.0011201	520.3053790993109	93.564	1.5776	93.56	92.647	94.224	-0.0042038					98	37	5	0	0	0	0.62163	1	11833	11833		51.335	3.6781	1	6559600			23567	375	16202	16239	27313	27313					0.0756736980297319
HSTLTIQVK	9	Unmodified	_HSTLTIQVK_					0	0	0			REV__ENSG00000132570|ENST00000254908|PCBD2	REV__ENSG00000132570|ENST00000254908|PCBD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2855224609375	2	513.800749	1025.58694	-0.22805	-0.00011717	3.5064	0.0018016	3.2784	0.0016844	513.8018700718457	61.945	0.38829	61.731	61.544	61.932	-0.21375					14	9	2	0	0	0	0.024436	1	6967	6967		23.042	0	1	110090	+		23568	23293	16203	16240	27314	27314					0.07517431851624679
HSVHLIPRA	9	Unmodified	_HSVHLIPRA_					0	0	0			REV__nc|ENSG00000135424|Q13683-9|ITGA7	REV__nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7901611328125	2	515.30125	1028.58795	-0.086093	-4.4364E-05	4.0794	0.0021021	3.9933	0.0020577	515.3041111173553	41.533	0.35963	41.533	41.292	41.652	0					13	9	2	0	0	0	0.024477	1	3717	3717		14.865	0	1	108080	+		23569	23542	16204	16241	27315	27315					0.0747969101118997
HSVLFRYRIT	10	Unmodified	_HSVLFRYRIT_					0	0	0			REV__ENST00000503780.5_2_4:175204868-175205078:+|nuORF	REV__ENST00000503780.5_2_4:175204868-175205078:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	646.3656005859375	2	646.367121	1290.71969	0.10778	6.9666E-05	-2.4058	-0.001555	-2.298	-0.0014853	646.3656023172358	46.555	0.70706	46.294	45.93	46.637	-0.26118					53	18	4	0	0	0	1.0909	1	4469	4469		33.922	2.2874	1	8429100	+		23570	33967	16205	16242	27316	27316					0.08595876308254446
HSVLHLCP	8	Unmodified	_HSVLHLCP_					0	0	0		nc|ENSG00000124256|Q9H171-2|ZBP1	nc|ENSG00000124256|Q9H171-2|ZBP1	nc|ENSG00000124256|Q9H171-2|ZBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.7264709472656	2	453.23673	904.458907	-0.049979	-2.2653E-05	2.2951	0.0010402	2.2451	0.0010176	453.2377581018868	23.884	0.77405	23.884	23.523	24.297	0					35	17	3	0	0	0	0.027866	1	969	969		19.36	0	1	240770			23571	18239	16206	16243	27317	27317					0.002855930567420728
HSVLHLCP	8	Unmodified	_HSVLHLCP_					0	0	0		nc|ENSG00000124256|Q9H171-2|ZBP1	nc|ENSG00000124256|Q9H171-2|ZBP1	nc|ENSG00000124256|Q9H171-2|ZBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	453.23673	904.458907	-0.6339	-0.0002873	3.1259	0.0014168	2.4921	0.0011295	453.2381384212045	23.858	0.51852	23.811	23.614	24.133	-0.047146	-0.036605	0.00033842	NaN	19.36	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234040			23572	18239	16206	16243							0.002855930567420728
HSVPSLGLL	9	Unmodified	_HSVPSLGLL_					0	0	0			REV__ENST00000471816.1_1_1:160766002-160783471:+|nuORF	REV__ENST00000471816.1_1_1:160766002-160783471:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	461.7734375	2	461.77146	921.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.38	1	98.215	97.715	98.715	-0.1652								0	0	0	0.6818	1	12171	12171		24.203	0	1		+		23573	33184	16207	16244	27318	27318					0.06446375277153038
HSVRSEPPEAH	11	Unmodified	_HSVRSEPPEAH_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2273864746094	3	415.870542	1244.5898	-0.059723	-2.4837E-05	3.8294	0.0015925	3.7697	0.0015677	416.2069882833236	41.684	0.19516	41.454	41.313	41.508	-0.23029					6	4	2	0	0	0	0.024759	1	3677	3677		8.7993	0	1	53744	+		23574	28394	16208	16245	27319	27319					-0.022713447615160476
HSVSLIDLW	9	Unmodified	_HSVSLIDLW_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.287353515625	2	535.287474	1068.5604	-0.10061	-5.3855E-05	0.058138	3.1121E-05	-0.042471	-2.2734E-05	535.2873916301702	80.907	1.0215	80.701	80.385	81.406	-0.20633					63	24	4	0	0	0	0.40179	1	9721	9721		65.803	1.5959	1	1410800			23575	7880	16209	16246	27320	27320					0.028857429603021956
HSVSLIDLW	9	Unmodified	_HSVSLIDLW_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2876586914062	2	535.287474	1068.5604	-0.66492	-0.00035593	1.3292	0.00071152	0.6643	0.00035559	535.2883700911556	80.863	0.98653	80.717	80.409	81.396	-0.146					59	23	4	0	0	0	0.43973	1	9700	9700		63.306	8.53	1	1244900			23576	7880	16209	16246	27321	27321					0.028857429603021956
HSVTHLAGK	9	Unmodified	_HSVTHLAGK_					0	0	0			REV__ENST00000526262.5_1_11:70189825-70228249:+|nuORF	REV__ENST00000526262.5_1_11:70189825-70228249:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7847900390625	2	475.264333	948.514114	0.080461	3.824E-05	3.449	0.0016392	3.5295	0.0016774	475.2665432921325	34.58	0.80426	34.575	34.298	35.102	-0.0045624					47	20	4	0	0	0	0.024427	1	2540	2540		34.173	5.023	1	446030	+		23577	23223	16210	16247	27322	27322					0.037797228488557266
HSWIRTKSL	9	Unmodified	_HSWIRTKSL_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3-5|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3-5|MATCAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.7963256835938	2	564.31964	1126.62473	-0.54863	-0.0003096	2.3525	0.0013276	1.8039	0.001018	564.3208342203906	37.323	0.75798	37.355	36.957	37.715	0.032269					30	19	2	0	0	0	0.024523	1	2966	2966		15.642	0	1	94473	+		23578	25770	16211	16248	27323	27323					0.06647942837071241
HSWQEQAP	8	Unmodified	_HSWQEQAP_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7923583984375	2	491.722498	981.430444	-0.60906	-0.00029949	-2.8708	-0.0014117	-3.4799	-0.0017111	491.72078336100606	60.725	0.71609	60.512	60.157	60.873	-0.21339					31	18	3	0	0	0	0.027866	1	7020	7020		40.573	6.4001	1	174250			23579	9697	16212	16249	27324	27324					-0.06101433318860927
HSWWPLVEVL	10	Unmodified	_HSWWPLVEVL_					0	0	0			REV__ENST00000571688.5_2_16:11643339-11643465:-|nuORF	REV__ENST00000571688.5_2_16:11643339-11643465:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	633.3688354492188	2	633.337498	1264.66044	0.16411	0.00010394	0.81232	0.00051447	0.97643	0.00061841	633.337852474469	95.542	0.21867	95.419	95.247	95.465	-0.12251					6	4	2	0	0	0	0.03519	1	11799	11799		19.997	0	1	27715	+		23580	35411	16213	16250	27325	27325					0.038699802940755035
HSYGRETY	8	Unmodified	_HSYGRETY_					0	0	0			REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.8119812011719	2	506.727781	1011.44101	-0.075438	-3.8227E-05	3.8655	0.0019588	3.7901	0.0019206	506.72970682332954	45.601	0.30968	45.504	45.359	45.668	-0.097176					12	8	2	0	0	0	0.027866	1	4322	4322		18.324	0	1	176120	+		23581	36331	16214	16251	27326	27326					-0.06425450664448817
HSYGRETY	8	Unmodified	_HSYGRETY_					0	0	0			REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.727781	1011.44101	-0.51286	-0.00025988	4.9051	0.0024855	4.3922	0.0022257	506.7301184852447	45.472	0.3993	45.472	45.214	45.613	0	0.014235	0.0003596	NaN	18.324	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211560	+		23582	36331	16214	16251							-0.06425450664448817
HSYGRETY	8	Unmodified	_HSYGRETY_					0	0	0			REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.727781	1011.44101	-0.58968	-0.00029881	5.2005	0.0026352	4.6108	0.0023364	506.7302780776351	45.521	0.36717	45.372	45.147	45.514	-0.1495	-0.086225	0.00065902	NaN	18.324	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315490	+		23583	36331	16214	16251							-0.06425450664448817
HSYGRETY	8	Unmodified	_HSYGRETY_					0	0	0			REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	REV__LRP6|p.S1596G|1|0.07|ENSG00000070018|chr12:12121182-12121182|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.727781	1011.44101	-0.17925	-9.0831E-05	4.3001	0.002179	4.1209	0.0020882	506.72978372896966	45.441	0.33452	45.484	45.279	45.614	0.04388	0.026314	-0.0002535	NaN	18.324	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287620	+		23584	36331	16214	16251							-0.06425450664448817
HSYPGASGW	9	Unmodified	_HSYPGASGW_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.21112060546875	2	481.211766	960.40898	0.013067	6.2879E-06	-0.34031	-0.00016376	-0.32724	-0.00015747	481.2114288845673	43.594	1.0861	43.482	43.145	44.231	-0.11253					74	29	4	0	0	0	0.040175	4	4020	3992;4003;4020;4033		133.47	56.251	1	4291200			23585	6820	16215	16252	27327;27328;27329;27330	27329					-0.0728081834756722
HSYPGASGW	9	Unmodified	_HSYPGASGW_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.2114562988281	2	481.211766	960.40898	-0.94459	-0.00045455	0.34467	0.00016586	-0.59993	-0.00028869	481.21180168180825	43.771	1.2333	43.529	43.206	44.44	-0.2423					74	33	4	0	0	0	0.028181	3	4020	4008;4020;4032		143.02	56.151	1	4691600			23586	6820	16215	16252	27331;27332;27333	27332					-0.0728081834756722
HSYPGASGW	9	Unmodified	_HSYPGASGW_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.210693359375	2	481.211766	960.40898	-0.69412	-0.00033402	-0.015702	-7.5558E-06	-0.70982	-0.00034157	481.2116147017202	43.796	1.5412	43.576	43.282	44.823	-0.21939					82	41	4	0	0	0	0.049585	2	4019	4019;4050		128.86	56.984	1	4275200			23587	6820	16215	16252	27334;27335	27334					-0.0728081834756722
HSYRQGDINL	10	Unmodified	_HSYRQGDINL_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	401.535271	1201.58398	0.97969	0.00039338	2.5209	0.0010122	3.5006	0.0014056	401.53616809381305	22.891	0.32692	22.695	22.552	22.879	-0.19601					11	6	2	0	0	0	0.03519	1	854	854		19.263	2.0959	1	19397	+		23588	31462	16216	16253	27336	27336					-0.008744432731646157
HTAFHVCEA	9	Unmodified	_HTAFHVCEA_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8414001464844	2	507.726726	1013.4389	-1.1624	-0.0005902	0.23261	0.0001181	-0.92983	-0.0004721	507.7267437912112	65.629	1.335	65.415	64.971	66.306	-0.21327					49	32	2	0	0	0	0.024457	1	7531	7531		21.96	4.5949	1	216850	+		23589	21057	16217	16254	27337	27337					-0.06728202673889427
HTAFIHIS	8	Unmodified	_HTAFIHIS_					0	0	0		ENST00000475841.2_1_12:132611152-132611335:+|nuORF	ENST00000475841.2_1_12:132611152-132611335:+|nuORF	ENST00000475841.2_1_12:132611152-132611335:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.77423095703125	2	463.248152	924.481751	-0.1445	-6.6941E-05	-1.0768	-0.0004988	-1.2213	-0.00056575	463.24544080868475	49.349	0.17827	49.196	49.076	49.254	-0.15277					6	4	2	0	0	0	0.027866	1	5063	5063		40.573	7.7602	1	25104			23590	15070	16218	16255	27338	27338					0.016489354458599337
HTAKISDFSW	10	Unmodified	_HTAKISDFSW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.2936401367188	2	596.293288	1190.57202	-0.28473	-0.00016978	0.36252	0.00021617	0.077797	4.639E-05	596.2934259466359	53.174	0.88587	53.047	52.753	53.639	-0.12705					62	23	4	0	0	0	0.1333	2	5557	5557;5575		129.42	55.166	1	3147300			23591	6950	16219	16256	27339;27340	27339					-0.01564060016357871
HTAKISDFSW	10	Unmodified	_HTAKISDFSW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.2938232421875	2	596.293288	1190.57202	-0.49309	-0.00029402	0.40291	0.00024025	-0.090177	-5.3772E-05	596.2934832830061	53.423	1.0062	53.164	52.843	53.849	-0.25838					57	28	3	0	0	0	0.040557	2	5580	5580;5590		150.36	51.732	1	3456000			23592	6950	16219	16256	27341;27342	27341					-0.01564060016357871
HTAKISDFSW	10	Unmodified	_HTAKISDFSW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.2943725585938	2	596.293288	1190.57202	-0.36772	-0.00021927	0.22496	0.00013414	-0.14276	-8.5129E-05	596.2933470324799	53.171	1.1054	52.981	52.672	53.777	-0.18982					78	30	4	0	0	0	0.0059825	2	5549	5549;5563		177.3	75.704	1	3564300			23593	6950	16219	16256	27343;27344	27343					-0.01564060016357871
HTAKLPDLVI	10	Unmodified	_HTAKLPDLVI_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8298950195312	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.91678	1	11265	11265		52.937	15.125	1	4896800	+		23594	22046	16220	16257	27345	27345					0.10094577919812764
HTAKLPDLVI	10	Unmodified	_HTAKLPDLVI_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8302612304688	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0122	2	11382	11309;11382		44.377	3.8046	1	4870500	+		23595	22046	16220	16257	27346;27347	27347					0.10094577919812764
HTAKLPDLVI	10	Unmodified	_HTAKLPDLVI_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8306274414062	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.98754	2	10953	10941;10953		47.657	6.2307	1	6921700	+		23596	22046	16220	16257	27348;27349	27349					0.10094577919812764
HTALGHIFL	9	Unmodified	_HTALGHIFL_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7847900390625	2	504.784902	1007.55525	0.22484	0.0001135	-1.9672	-0.00099303	-1.7424	-0.00087953	504.7838027361839	98.018	1.1845	98.028	97.684	98.869	0.010231					63	27	3	0	0	0	0.33184	1	12473	12473		71.378	2.8932	1	1045200	+		23597	26717	16221	16258	27350	27350					0.05177483888314782
HTALGHIFL	9	Unmodified	_HTALGHIFL_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7845153808594	2	504.784902	1007.55525	0.80019	0.00040393	-3.0262	-0.0015276	-2.226	-0.0011236	504.7832262567277	97.974	1.7021	97.838	97.195	98.897	-0.13625					72	39	3	0	0	0	0.64155	1	12121	12121		50.025	11.218	1	1007400	+		23598	26717	16221	16258	27351	27351					0.05177483888314782
HTALGHIFL	9	Unmodified	_HTALGHIFL_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7845458984375	2	504.784902	1007.55525	-0.34095	-0.00017211	-2.0067	-0.001013	-2.3477	-0.0011851	504.7838187807542	98.035	1.7286	97.87	97.125	98.853	-0.1652					69	37	2	0	0	0	0.78069	2	12182	12141;12182		40.573	2.2494	1	974710	+		23599	26717	16221	16258	27352;27353	27353					0.05177483888314782
HTALVLVRI	9	Unmodified	_HTALVLVRI_					0	0	0			REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.32757568359375	2	511.329476	1020.6444	-0.31632	-0.00016175	-4.2996	-0.0021985	-4.6159	-0.0023602	511.32720987540836	96.338	0.93864	96.182	95.794	96.733	-0.15646					55	21	4	0	0	0	0.92825	1	11914	11914		30.504	1.3541	1	818320	+		23600	27400	16222	16259	27354	27354					0.13490318847846083
HTANEVHIG	9	Unmodified	_HTANEVHIG_					0	0	0			REV__ENSG00000172554|ENST00000308624|SNTG2	REV__ENSG00000172554|ENST00000308624|SNTG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.79400634765625	2	489.243598	976.472643	-0.46435	-0.00022718	0.89403	0.0004374	0.42969	0.00021022	489.24387878124566	22.096	0.65924	22.096	21.819	22.479	0					20	13	2	0	0	0	0.024418	1	747	747		45.972	15.469	1	160640	+		23601	26686	16223	16260	27355	27355					-0.016534579104700242
HTAPRPAQP	9	Unmodified	_HTAPRPAQP_					0	0	0		ENST00000263119.9_1_22:24574256-24574385:+|nuORF	ENST00000263119.9_1_22:24574256-24574385:+|nuORF	ENST00000263119.9_1_22:24574256-24574385:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7922668457031	2	487.761958	973.509363	0.41668	0.00020324	-3.8936	-0.0018992	-3.4769	-0.0016959	487.76051406419083	78.552	0.24896	78.36	78.257	78.506	-0.1921					6	5	2	0	0	0	0.024436	1	9706	9706		16.473	0	1	100800			23602	11523	16224	16261	27356	27356					0.02154838706087503
HTAQHRVLD	9	Unmodified	_HTAQHRVLD_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3272705078125	2	538.783422	1075.55229	0.48055	0.00025891	-2.5785	-0.0013892	-2.0979	-0.0011303	538.7822360656332	99.824	0.17838	99.699	99.538	99.717	-0.12504					8	4	2	0	0	0	0.024527	1	12372	12372		39.253	11.371	1	51090	+		23603	28935	16225	16262	27357	27357					0.017536087635107833
HTARVAGT	8	Unmodified	_HTARVAGT_					0	0	0		ENST00000511669.1_1_4:74904114-74904440:-|nuORF	ENST00000511669.1_1_4:74904114-74904440:-|nuORF	ENST00000511669.1_1_4:74904114-74904440:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2489013671875	2	406.722301	811.43005	-0.049639	-2.0189E-05	0.80087	0.00032573	0.75123	0.00030554	406.7223908485999	87.901	0.51901	87.764	87.502	88.021	-0.13744					16	12	2	0	0	0	0.027866	1	10710	10710		23.042	5.6775	1	157350			23604	15844	16226	16263	27358	27358					0.016791917519526578
HTATLVIPVSL	11	Unmodified	_HTATLVIPVSL_					0	0	0			REV__ENSG00000138801|ENST00000265174|PAPSS1	REV__ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.843505859375	2	575.845156	1149.67576	-0.10957	-6.3095E-05	-3.6823	-0.0021204	-3.7919	-0.0021835	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	0.99553	1	11359	11359		37.812	1.3648	1	4935500	+		23605	23906	16227	16264	27359	27359					0.10690847091291289
HTAVLGVVVE	10	Unmodified	_HTAVLGVVVE_					0	0	0		ENST00000355451.7_1_7:44423421-44423562:-|nuORF	ENST00000355451.7_1_7:44423421-44423562:-|nuORF	ENST00000355451.7_1_7:44423421-44423562:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2536010742188	2	512.295299	1022.57605	-0.63977	-0.00032775	0.37329	0.00019124	-0.26647	-0.00013651	512.2965717471856	54.336	0.30942	54.2	54.053	54.363	-0.13617					14	8	2	0	0	0	0.03519	1	5794	5794		25.574	9.9322	1	189190			23606	12646	16228	16265	27360	27360					0.06566029477346547
HTAVPIVKGL	10	Unmodified	_HTAVPIVKGL_					0	0	0			REV__nc|ENSG00000114982|Q9P2N6-8|KANSL3	REV__nc|ENSG00000114982|Q9P2N6-8|KANSL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.8192138671875	2	517.821484	1033.62842	-0.13475	-6.9778E-05	-4.1199	-0.0021334	-4.2546	-0.0022031	517.8191984377918	91.962	1.0921	91.84	91.372	92.464	-0.12242					80	25	5	0	0	0	1.1267	1	11280	11280		29.15	1.2673	1	1129300	+		23607	22157	16229	16266	27361	27361					0.1129461261095912
HTCLSTRR	8	Unmodified	_HTCLSTRR_					0	0	0			REV__ENSG00000182575|ENST00000328741|NXPH3	REV__ENSG00000182575|ENST00000328741|NXPH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.3002624511719	2	487.253443	972.492332	-0.88389	-0.00043068	-2.5567	-0.0012458	-3.4406	-0.0016765	487.25184000954215	57.882	0.42686	57.973	57.797	58.224	0.091217					27	11	4	0	0	0	0.027866	1	6494	6494		18.324	10.634	1	391370	+		23608	27491	16230	16267	27362	27362					0.004985948286275743
HTCREDGLPLY	11	Unmodified	_HTCREDGLPLY_					0	0	0			REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2187805175781	3	435.208167	1302.60267	-0.61812	-0.00026901	2.1215	0.0009233	1.5034	0.00065429	435.2088890954116	30.128	0.33351	30.202	30.003	30.337	0.074314					10	7	2	0	0	0	0.024779	1	1854	1854		21.78	0	1	20939	+		23609	22117	16231	16268	27363	27363					-0.036526496936176045
HTDAHNKV	8	Unmodified	_HTDAHNKV_					0	0	0		ENST00000532163.5_1_11:111946298-111946382:+|nuORF	ENST00000532163.5_1_11:111946298-111946382:+|nuORF	ENST00000532163.5_1_11:111946298-111946382:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7740783691406	2	461.230491	920.446428	-0.74785	-0.00034493	-1.9504	-0.00089959	-2.6983	-0.0012445	461.2294576532473	23.886	0.47409	23.839	23.614	24.088	-0.047146					15	10	2	0	0	0	0.027866	1	993	993		40.573	0	1	45520			23610	16282	16232	16269	27364	27364					-0.01697727081955236
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	631.7705688476562	2	631.769842	1261.52513	-0.61994	-0.00039166	0.71726	0.00045315	0.097323	6.1486E-05	631.7701021156813	66.897	1.3716	66.649	66.255	67.627	-0.24839					90	39	3	0	0	0	0.066926	6	7683	7672;7677;7683;7691;7701;7716		143.89	58.527	1	4524600			23611	2920	16233	16270	27365;27366;27367;27368;27369;27370	27367					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	631.7691040039062	2	631.769842	1261.52513	-1.0135	-0.0006403	1.0872	0.00068685	0.073676	4.6546E-05	631.7704435273045	66.859	1.5476	66.636	66.259	67.807	-0.22374					96	42	3	0	0	0	0.10389	5	7684	7674;7684;7690;7697;7709		134.81	51.839	1	4194600			23612	2920	16233	16270	27371;27372;27373;27374;27375	27372					-0.09516964358181212
HTDDPLTWDY	10	Unmodified	_HTDDPLTWDY_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	631.7698974609375	2	631.769842	1261.52513	-0.62642	-0.00039575	0.77301	0.00048836	0.14659	9.2614E-05	631.7702127377357	66.879	1.6166	66.634	66.203	67.82	-0.24517					101	44	4	0	0	0	0.066926	6	7686	7658;7664;7671;7677;7686;7697		143.89	58.527	1	3441900			23613	2920	16233	16270	27376;27377;27378;27379;27380;27381	27380					-0.09516964358181212
HTDGEAAE	8	Unmodified	_HTDGEAAE_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.761474609375	2	415.169764	828.324976	0.77544	0.00032194	-3.7818	-0.0015701	-3.0064	-0.0012482	415.16692907990597	87.749	0.11494	87.714	87.654	87.769	-0.035355					4	2	2	0	0	0	0.027866	1	11014	11014		12.207	0	1	39342			23614	9254	16234	16271	27382	27382					-0.09605394235131826
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.811279296875	2	573.811313	1145.60807	0.12584	7.2206E-05	-0.22379	-0.00012841	-0.097952	-5.6206E-05	573.8111353639532	32.001	1.0456	31.764	31.411	32.457	-0.23666					62	24	4	0	0	0	0.034407	3	2182	2171;2182;2196		138.06	49.065	1	1561600			23615	2540	16235	16272	27383;27384;27385	27384					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.8114624023438	2	573.811313	1145.60807	0.034192	1.962E-05	-0.046386	-2.6617E-05	-0.012194	-6.9968E-06	573.8111538441867	32.015	1.1849	31.823	31.512	32.697	-0.19261					65	27	4	0	0	0	0.020687	3	2175	2165;2175;2188		148.99	77.109	1	1397500			23616	2540	16235	16272	27386;27387;27388	27387					0.04109397160482331
HTDILKEKY	9	Unmodified	_HTDILKEKY_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.811767578125	2	573.811313	1145.60807	-0.49071	-0.00028158	0.1103	6.329E-05	-0.38041	-0.00021828	573.8113320257378	32.003	0.91365	31.846	31.489	32.403	-0.15772					59	21	4	0	0	0	0.030064	3	2158	2149;2158;2171		141.52	75.091	1	1892600			23617	2540	16235	16272	27389;27390;27391	27390					0.04109397160482331
HTDIVLAL	8	Unmodified	_HTDIVLAL_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.8537292480469	2	441.258185	880.501818	-0.61318	-0.00027057	1.5606	0.00068864	0.94745	0.00041807	441.2586219834707	30.72	1.5711	30.542	30.04	31.611	-0.17818					74	38	3	0	0	0	0.027866	1	2128	2128		28.254	0	1	308340			23618	9269	16236	16273	27392	27392					0.056786863857951175
HTDQSKARMAQ	11	Unmodified	_HTDQSKARMAQ_					0	0	0			REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.1952209472656	3	424.875299	1271.60407	-0.24301	-0.00010325	-2.3226	-0.00098683	-2.5656	-0.0010901	424.8740045892902	23.004	0.50729	22.818	22.554	23.061	-0.18539					21	10	3	0	0	0	0.02473	1	834	834		26.75	20.429	1	102770	+		23619	23811	16237	16274	27393	27393					-0.020870156048658828
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.76123046875	2	523.761289	1045.50803	0.88702	0.00046459	-1.6098	-0.00084314	-0.72276	-0.00037856	523.760471526935	59.826	1.531	59.629	59.173	60.704	-0.19742					129	38	5	0	0	0	0.034181	6	6617	6605;6617;6629;6641;6655;6666		138.24	52.883	1	38611000			23620	9882	16238	16275	27394;27395;27396;27397;27398;27399	27395					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.7615966796875	2	523.761289	1045.50803	0.53787	0.00028171	-1.2292	-0.00064378	-0.69129	-0.00036207	523.7606485844576	59.749	1.3952	59.573	59.24	60.635	-0.1761					103	35	3	0	0	0	0.047345	6	6616	6594;6604;6616;6628;6640;6654		129.68	52.836	1	38837000			23621	9882	16238	16275	27400;27401;27402;27403;27404;27405	27402					-0.012908401733284336
HTDVGLLEY	9	Unmodified	_HTDVGLLEY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000542565.1_1_12:124970985-124979836:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.7611083984375	2	523.761289	1045.50803	0.016663	8.7275E-06	-0.7518	-0.00039376	-0.73514	-0.00038504	523.7609128358826	59.876	1.8887	59.627	58.93	60.818	-0.24842					155	47	7	0	0	0	0.072054	6	6617	6595;6605;6617;6629;6641;6655		120.62	43.774	1	34261000			23622	9882	16238	16275	27406;27407;27408;27409;27410;27411	27408					-0.012908401733284336
HTDWLLDLY	9	Unmodified	_HTDWLLDLY_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.28955078125	2	588.290214	1174.56587	-0.048063	-2.8275E-05	0.081395	4.7884E-05	0.033332	1.9609E-05	588.2902216385961	85.339	1.3508	85.144	84.808	86.159	-0.19507					83	31	4	0	0	0	0.08613	2	10319	10319;10331		115.46	33.154	1	1864400			23623	4700	16239	16276	27412;27413	27412					-0.0144257824788383
HTDWLLDLY	9	Unmodified	_HTDWLLDLY_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.2897338867188	2	588.290214	1174.56587	-0.0081875	-4.8166E-06	-0.18541	-0.00010908	-0.1936	-0.00011389	588.2900582231244	85.201	1.6526	85.051	84.747	86.4	-0.14967					92	38	5	0	0	0	0.049585	2	10327	10327;10338		128.86	32.671	1	1808700			23624	4700	16239	16276	27414;27415	27414					-0.0144257824788383
HTDWLLDLY	9	Unmodified	_HTDWLLDLY_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.2902221679688	2	588.290214	1174.56587	-0.13377	-7.8697E-05	0.10603	6.2378E-05	-0.027741	-1.632E-05	588.2902351011721	85.271	1.4355	85.134	84.789	86.224	-0.13752					88	33	5	0	0	0	0.22754	2	10317	10317;10342		85.359	19.894	1	1667800			23625	4700	16239	16276	27416;27417	27416					-0.0144257824788383
HTEAVPAARW	10	Unmodified	_HTEAVPAARW_					0	0	0		WDR25|p.R296P|1|0.22|ENSG00000176473|chr14:100468085-100468085|G/C|missense_variant	WDR25|p.R296P|1|0.22|ENSG00000176473|chr14:100468085-100468085|G/C|missense_variant	WDR25|p.R296P|1|0.22|ENSG00000176473|chr14:100468085-100468085|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7700805664062	2	569.293622	1136.57269	0.28079	0.00015985	-1.3498	-0.00076844	-1.069	-0.00060859	569.2929008118939	72.553	0.89268	72.288	72.001	72.894	-0.26479					28	20	3	0	0	0	0.03519	1	8522	8522		27.882	4.3595	1	236230			23626	38150	16240	16277	27418	27418					0.009867794233286986
HTEEITRMR	9	Unmodified	_HTEEITRMR_					0	0	0		ENST00000565062.5_1_16:90097706-90103159:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF;nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8	ENST00000565062.5_1_16:90097706-90103159:+|nuORF	ENST00000565062.5_1_16:90097706-90103159:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	585.8116455078125	2	586.795672	1171.57679	0.07601	4.4603E-05	-0.12749	-7.4811E-05	-0.05148	-3.0208E-05	586.7954824552745	27.661	0.7502	27.743	27.498	28.249	0.081293					28	18	2	0	0	0	0.024292	1	1487	1487		49.442	17.912	1	340120			23627	5463	16241	16278	27419	27419					-0.002134991452749091
HTEGNPQHEP	10	Unmodified	_HTEGNPQHEP_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2799072265625	2	573.252151	1144.48975	0.11243	6.4452E-05	2.1928	0.001257	2.3052	0.0013215	573.2552037944761	77.725	0.59143	77.463	77.27	77.861	-0.26202					22	13	3	0	0	0	0.03519	1	9220	9220		23.523	0	1	724700	+		23628	23804	16242	16279	27420	27420					-0.07671582095326812
HTEIEERFVL	10	Unmodified	_HTEIEERFVL_					0	0	0			REV__ENST00000538229.2_1_X:105570901-105571048:+|nuORF	REV__ENST00000538229.2_1_X:105570901-105571048:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.9131774902344	3	424.890944	1271.651	-0.7439	-0.00031608	3.5679	0.001516	2.824	0.0011999	424.89229484556745	39.11	0.21109	39.011	38.843	39.054	-0.098755					7	5	2	0	0	0	0.03519	1	3307	3307		37.508	6.44	1	78838	+		23629	26401	16243	16280	27421	27421					0.02604167217896247
HTELDEYK	8	Unmodified	_HTELDEYK_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.799560546875	2	517.743096	1033.47164	-0.089658	-4.642E-05	-1.4375	-0.00074426	-1.5272	-0.00079068	517.7438712912472	104.58	0.17995	104.58	104.44	104.62	0.0031433					5	4	2	0	0	0	0.027866	1	13371	13371		26.796	0	1	16603	+		23630	19837	16244	16281	27422	27422					-0.04375717070047358
HTELHSIYTS	10	Unmodified	_HTELHSIYTS_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.3065795898438	2	594.288202	1186.56185	-0.61239	-0.00036394	3.7654	0.0022377	3.153	0.0018738	594.2902299184482	63.755	0.65412	63.527	63.212	63.866	-0.22773					38	16	3	0	0	0	0.03519	1	7173	7173		32.812	3.6629	1	620730	+		23631	27307	16245	16282	27423	27423					-0.023966677416183302
HTELHSIYTS	10	Unmodified	_HTELHSIYTS_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	594.288202	1186.56185	-0.19218	-0.00011421	3.2043	0.0019043	3.0121	0.0017901	594.2898652686824	63.792	0.64315	63.534	63.313	63.956	-0.25824	0.019685	-0.00058784	NaN	32.812	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	743430	+		23632	27307	16245	16282							-0.023966677416183302
HTERGLLFRRL	11	Unmodified	_HTERGLLFRRL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.60809326171875	3	466.608993	1396.80515	0.45659	0.00021305	-2.9464	-0.0013748	-2.4898	-0.0011618	466.6073956273285	98.403	2.1628	98.413	97.105	99.268	0.010231					136	49	4	0	0	0	1.017	2	12415	12415;12433		33.039	9.6615	1	480010			23633	874	16246	16283	27424;27425	27424					0.12262041493931974
HTERGLLFRRL	11	Unmodified	_HTERGLLFRRL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MSMS	OPSCC_39_ClassI_Rep-2	2	466.6081848144531	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.33	1	100.34	99.839	100.84	0.010117								0	0	0	1.4553	1	12800	12800		17.833	3.1395	1				23634	874	16246	16283	27426	27426					0.12262041493931974
HTERGLLFRRL	11	Unmodified	_HTERGLLFRRL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.60821533203125	3	466.608993	1396.80515	1.035	0.00048292	-3.035	-0.0014162	-2.0001	-0.00093325	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.0739	1	12791	12791		18.531	1.3643	1	655350			23635	874	16246	16283	27427	27427					0.12262041493931974
HTERGLLFRRL	11	Unmodified	_HTERGLLFRRL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	466.608993	1396.80515	0.81432	0.00037997	-4.0823	-0.0019049	-3.268	-0.0015249	466.6063675016334	98.527	1.5499	98.391	97.739	99.289	-0.13625	-0.01148	-0.0015733	NaN	33.039	108	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556960			23636	874	16246	16283							0.12262041493931974
HTERGLLFRRL	11	Unmodified	_HTERGLLFRRL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	466.608993	1396.80515	1.1923	0.00055635	-3.7753	-0.0017616	-2.583	-0.0012053	466.6066671400838	98.469	1.4225	98.345	97.812	99.234	-0.12413	-0.057456	-0.0011435	NaN	33.039	115	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449200			23637	874	16246	16283							0.12262041493931974
HTERGLLFRRL	11	Unmodified	_HTERGLLFRRL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	466.608993	1396.80515	-0.23181	-0.00010816	-1.9125	-0.00089237	-2.1443	-0.0010005	466.6078646303841	98.602	1.3994	98.437	97.967	99.367	-0.1652	0.034547	0.0014642	NaN	33.039	112	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589610			23638	874	16246	16283							0.12262041493931974
HTETKTITY	9	Unmodified	_HTETKTITY_					0	0	0		ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41	ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2791748046875	2	547.279846	1092.54514	-0.63833	-0.00034934	0.10307	5.641E-05	-0.53525	-0.00029293	547.2799236748581	27.96	1.2889	27.715	27.332	28.621	-0.24524					94	30	6	0	0	0	0.067814	4	1582	1573;1582;1594;1607		122.18	38.824	1	6542600			23639	1732;6714;14696	16247	16284	27428;27429;27430;27431	27429					0.002568313724395921
HTETKTITY	9	Unmodified	_HTETKTITY_					0	0	0		ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41	ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2796630859375	2	547.279846	1092.54514	-0.93218	-0.00051016	0.37539	0.00020544	-0.55678	-0.00030472	547.2801015750387	27.784	1.4983	27.616	27.23	28.728	-0.16816					125	35	7	0	0	0	0.067814	4	1547	1547;1558;1571;1597		122.18	74.26	1	7209600			23640	1732;6714;14696	16247	16284	27432;27433;27434;27435	27432					0.002568313724395921
HTETKTITY	9	Unmodified	_HTETKTITY_					0	0	0		ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41	ENST00000462032.1_1_1:29424324-29436027:+|nuORF;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.2797241210938	2	547.279846	1092.54514	-0.63507	-0.00034756	-0.076201	-4.1703E-05	-0.71128	-0.00038927	547.2798504218395	27.898	1.259	27.746	27.353	28.612	-0.15195					97	30	6	0	0	0	0.10174	5	1563	1543;1551;1563;1576;1591		110.12	42.8	1	8075700			23641	1732;6714;14696	16247	16284	27436;27437;27438;27439;27440	27438					0.002568313724395921
HTFEFWNL	8	Unmodified	_HTFEFWNL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.278564453125	2	547.258717	1092.50288	-0.90276	-0.00049405	-4.0135	-0.0021964	-4.9163	-0.0026905	547.7566710744693	29.01	0.11186	29.09	29.017	29.129	0.079773					4	2	2	0	0	0	0.027866	1	1684	1684		31.955	11.958	1	17523			23642	5140	16248	16285	27441	27441					-0.03967099245278405
HTFQNDIHVY	10	Unmodified	_HTFQNDIHVY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	637.3013305664062	2	637.301644	1272.58874	-1.1587	-0.00073842	0.87671	0.00055873	-0.28195	-0.00017969	637.3021512111281	45.856	0.8371	45.759	45.494	46.331	-0.096649					51	22	4	0	0	0	0.085272	1	4387	4387		141.52	81.402	1	3456900			23643	3523	16249	16286	27442	27442					-0.0366555913042248
HTFQNDIHVY	10	Unmodified	_HTFQNDIHVY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	637.301513671875	2	637.301644	1272.58874	-0.48736	-0.00031059	0.18458	0.00011763	-0.30278	-0.00019296	637.3017312902082	46.058	0.94065	45.797	45.557	46.498	-0.26118					54	24	4	0	0	0	0.16319	3	4393	4393;4403;4416		114.89	54.181	1	2961500			23644	3523	16249	16286	27443;27444;27445	27443					-0.0366555913042248
HTFQNDIHVY	10	Unmodified	_HTFQNDIHVY_					0	0	0		nc|ENSG00000116133|Q15392-2|DHCR24;ENSG00000116133|ENST00000371269|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	nc|ENSG00000116133|Q15392-2|DHCR24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	637.3016357421875	2	637.301644	1272.58874	-1.15	-0.00073291	0.75147	0.00047892	-0.39855	-0.00025399	637.302090311901	45.979	0.9141	45.776	45.492	46.406	-0.20226					56	24	4	0	0	0	0.20643	2	4379	4379;4392		120.87	55.403	1	2952200			23645	3523	16249	16286	27446;27447	27446					-0.0366555913042248
HTFRERRLE	9	Unmodified	_HTFRERRLE_					0	0	0			REV__ENSG00000132623|ENST00000378392|ANKEF1	REV__ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3358764648438	2	622.336353	1242.65815	0.63113	0.00039278	-0.35357	-0.00022004	0.27757	0.00017274	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	0.83071	1	13502	13502		37.159	4.3467	1	1535400	+		23646	23300	16250	16287	27448	27448					0.046529446090062265
HTFRGLLRELR	11	Unmodified	_HTFRGLLRELR_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MSMS	OPSCC_39_ClassI_Rep-1	1	466.6094055175781	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.02	1	100.02	99.516	100.52	0								0	0	0	1.3793	1	12792	12792		21.78	5.2506	1				23647	18459;7338	16251	16288	27449	27449					0.12262041493931974
HTFRGLLRELR	11	Unmodified	_HTFRGLLRELR_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.60833740234375	3	466.608993	1396.80515	1.035	0.00048292	-3.035	-0.0014162	-2.0001	-0.00093325	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.0621	1	12812	12812		21.78	0.74819	1	655350			23648	18459;7338	16251	16288	27450	27450					0.12262041493931974
HTFRGLLRELR	11	Unmodified	_HTFRGLLRELR_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.9407043457031	3	466.608993	1396.80515	0.67563	0.00031525	-2.6518	-0.0012373	-1.9761	-0.00092208	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0408	2	12418	12418;12434		27.644	4.266	1	1258700			23649	18459;7338	16251	16288	27451;27452	27451					0.12262041493931974
HTFRGLLRELR	11	Unmodified	_HTFRGLLRELR_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1;ENSG00000164898|ENST00000297534|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.9424743652344	3	466.608993	1396.80515	-0.089898	-4.1947E-05	-1.9323	-0.00090164	-2.0222	-0.00094359	466.6080804541521	100.51	2.3323	100.33	99.316	101.65	-0.17088					127	63	3	0	0	0	1.0215	2	12486	12486;12514		32.034	6.1424	1	684720			23650	18459;7338	16251	16288	27453;27454	27453					0.12262041493931974
HTFTGSIEL	9	Unmodified	_HTFTGSIEL_					0	0	0			REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	REV__ENST00000441188.2_1_X:92477682-92478501:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.8105163574219	2	502.756007	1003.49746	0.38954	0.00019584	3.7073	0.0018639	4.0968	0.0020597	502.7573253072516	69.491	0.58305	69.198	69.01	69.593	-0.29291					24	14	2	0	0	0	0.024323	1	8358	8358		35.618	5.7767	1	923650	+		23651	19824	16252	16289	27455	27455					-0.004148228277585986
HTGLGLLAWPL	11	Unmodified	_HTGLGLLAWPL_					0	0	0		ENST00000176763.9_1_5:171470934-171471408:-|nuORF	ENST00000176763.9_1_5:171470934-171471408:-|nuORF	ENST00000176763.9_1_5:171470934-171471408:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3438110351562	2	589.340041	1176.66553	0.92698	0.00054631	3.2392	0.001909	4.1662	0.0024553	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0054	1	11374	11374		35.618	1.4457	1	4746700			23652	11119	16253	16290	27456	27456					0.0842628415668969
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7485046386719	2	425.748319	849.482085	-0.72573	-0.00030898	0.81823	0.00034836	0.092496	3.938E-05	425.74861941915304	26.066	1.5438	26.066	25.779	27.323	0					87	37	3	0	0	0	1.0009	1	1301	1301		37.159	1.9584	1	5171000			23653	17022	16254	16291	27457	27457					0.05132355165721947
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.7489013671875	2	425.748319	849.482085	-0.54844	-0.0002335	0.61594	0.00026223	0.067499	2.8738E-05	425.7485324250809	26.154	1.304	26.131	25.82	27.124	-0.023088					73	31	3	0	0	0	1.0516	1	1276	1276		29.15	6.1071	1	4991500			23654	17022	16254	16291	27458	27458					0.05132355165721947
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7491455078125	2	425.748319	849.482085	-0.42189	-0.00017962	0.72138	0.00030713	0.29949	0.00012751	425.74859215487453	26.24	1.9671	26.004	25.72	27.687	-0.23603					133	49	4	0	0	0	1.0338	2	1309	1309;1319		31.955	6.5047	1	14096000			23655	17022	16254	16291	27459;27460	27459					0.05132355165721947
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7483825683594	2	425.748319	849.482085	-0.0012771	-5.4373E-07	0.53388	0.0002273	0.53261	0.00022676	425.74852628982774	25.963	2.3917	25.792	25.413	27.805	-0.17078					128	60	4	0	0	0	0.99042	1	1307	1307		38.806	0	1	16320000			23656	17022	16254	16291	27461	27461					0.05132355165721947
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.74847412109375	2	425.748319	849.482085	-0.66646	-0.00028374	0.80329	0.000342	0.13683	5.8256E-05	425.74862788882973	26.178	2.1616	26.014	25.674	27.835	-0.16331					138	55	4	0	0	0	0.93274	2	1325	1278;1325		47.916	0	1	14509000			23657	17022	16254	16291	27462;27463	27463					0.05132355165721947
HTGPFALL	8	Unmodified	_HTGPFALL_					0	0	0			REV__ENSG00000141580|ENST00000392325|WDR45B	REV__ENSG00000141580|ENST00000392325|WDR45B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.26171875	2	428.239796	854.465038	-0.35599	-0.00015245	2.8612	0.0012253	2.5052	0.0010728	428.24075963154945	90.395	0.16622	90.27	90.208	90.374	-0.12512					5	3	2	0	0	0	0.027866	1	11085	11085		29.842	26.157	1	76133	+		23658	24110	16255	16292	27464	27464					0.03198434559908492
HTGPRALL	8	Unmodified	_HTGPRALL_					0	0	0		ENST00000310771.8_1_7:99950889-99951396:+|nuORF	ENST00000310771.8_1_7:99950889-99951396:+|nuORF	ENST00000310771.8_1_7:99950889-99951396:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.7205810546875	2	432.756144	863.497735	-0.48645	-0.00021051	-0.95322	-0.00041251	-1.4397	-0.00062302	432.7558953152798	30.495	0.29344	30.316	30.203	30.497	-0.17818					9	6	2	0	0	0	0.027866	1	1968	1968		23.042	0	1	28127			23659	12069	16256	16293	27465	27465					0.06052641682754256
HTGPVLDI	8	Unmodified	_HTGPVLDI_					0	0	0		ENST00000453768.6_1_11:67208484-67210099:-|nuORF;ENSG00000110880|ENST00000261401|CORO1C;nc|ENSG00000110880|Q9ULV4-2|CORO1C;ENSG00000172725|ENST00000341356|CORO1B;nc|ENSG00000110880|Q9ULV4-3|CORO1C	ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENST00000453768.6_1_11:67208484-67210099:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2461853027344	2	426.23471	850.454868	0.35807	0.00015262	-4.1914	-0.0017865	-3.8333	-0.0016339	426.23330957918864	86.843	0.59129	86.864	86.46	87.051	0.021263					18	13	2	0	0	0	0.027866	1	10822	10822		38.806	14.603	1	95828			23660	3070	16257	16294	27466	27466					0.023658268346594014
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-3|SEC31A	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7488098144531	2	425.748319	849.482085	-0.72573	-0.00030898	0.81823	0.00034836	0.092496	3.938E-05	425.74861941915304	26.066	1.5438	26.066	25.779	27.323	0					87	37	3	0	0	0	0.91239	2	1313	1278;1313		50.025	9.4519	1	5171000			23661	5266	16258	16295	27467;27468	27468					0.051323551656992095
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-3|SEC31A	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.74859619140625	2	425.748319	849.482085	-0.54844	-0.0002335	0.61594	0.00026223	0.067499	2.8738E-05	425.7485324250809	26.154	1.304	26.131	25.82	27.124	-0.023088					73	31	3	0	0	0	0.81662	2	1298	1287;1298		57.811	9.8957	1	4991500			23662	5266	16258	16295	27469;27470	27470					0.051323551656992095
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-3|SEC31A	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.74884033203125	2	425.748319	849.482085	0.36675	0.00015614	-0.24563	-0.00010458	0.12112	5.1565E-05	425.7481618134916	25.988	1.3867	26.068	25.749	27.135	0.08009					90	33	4	0	0	0	0.93274	3	1220	1220;1229;1241		47.916	7.343	1	4984800			23663	5266	16258	16295	27471;27472;27473	27471					0.051323551656992095
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-3|SEC31A	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7487487792969	2	425.748319	849.482085	-0.42189	-0.00017962	0.72138	0.00030713	0.29949	0.00012751	425.74859215487453	26.24	1.9671	26.004	25.72	27.687	-0.23603					133	49	4	0	0	0	0.59392	4	1356	1333;1345;1356;1368		76.847	23.495	1	14096000			23664	5266	16258	16295	27474;27475;27476;27477	27476					0.051323551656992095
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-3|SEC31A	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.74908447265625	2	425.748319	849.482085	-0.0012771	-5.4373E-07	0.53388	0.0002273	0.53261	0.00022676	425.74852628982774	25.963	2.3917	25.792	25.413	27.805	-0.17078					128	60	4	0	0	0	0.93274	4	1271	1261;1271;1282;1295		47.916	15.961	1	16320000			23665	5266	16258	16295	27478;27479;27480;27481	27479					0.051323551656992095
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-3|SEC31A	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.74853515625	2	425.748319	849.482085	-0.66646	-0.00028374	0.80329	0.000342	0.13683	5.8256E-05	425.74862788882973	26.178	2.1616	26.014	25.674	27.835	-0.16331					138	55	4	0	0	0	0.97924	5	1301	1301;1313;1350;1362;1374		40.573	8.3025	1	14509000			23666	5266	16258	16295	27482;27483;27484;27485;27486	27482					0.051323551656992095
HTGRGRVAQV	10	Unmodified	_HTGRGRVAQV_					0	0	0			REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7597045898438	2	540.804688	1079.59482	-0.80893	-0.00043747	-3.5872	-0.00194	-4.3961	-0.0023774	540.8027608829829	40.81	0.45456	40.674	40.454	40.908	-0.13553					17	11	2	0	0	0	0.03519	1	3582	3582		13.454	0	1	185090	+		23667	22503	16259	16296	27487	27487					0.05821003891765031
HTGVCRPRNRC	11	Unmodified	_HTGVCRPRNRC_					0	0	0		ENST00000503652.1_1_5:75377890-75378187:-|nuORF	ENST00000503652.1_1_5:75377890-75378187:-|nuORF	ENST00000503652.1_1_5:75377890-75378187:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.5483703613281	3	433.548752	1297.62443	0.57212	0.00024804	-1.8675	-0.00080964	-1.2954	-0.0005616	433.54795475832015	24.534	1.8981	24.613	23.394	25.293	0.078344					147	42	5	0	0	0	1.0408	1	1008	1008		27.644	1.5805	1	1286500			23668	15697	16260	16297	27488	27488					-0.012481234260576457
HTHAWPFG	8	Unmodified	_HTHAWPFG_					0	0	0			REV__ENSG00000049239|ENST00000377403|H6PD	REV__ENSG00000049239|ENST00000377403|H6PD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7954406738281	2	476.724844	951.435135	1.0914	0.00052028	1.3357	0.00063676	2.4271	0.001157	476.72533883352554	70.043	0.53265	69.75	69.467	70	-0.29291					26	12	3	0	0	0	0.027866	1	8445	8445		13.775	1.5685	1	357620	+		23669	20144	16261	16298	27489	27489					-0.04252504385431166
HTHGFFQAALT	11	Unmodified	_HTHGFFQAALT_					0	0	0			REV__nc|ENSG00000166311|P17405-4|SMPD1	REV__nc|ENSG00000166311|P17405-4|SMPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.8912048339844	3	410.540245	1228.59891	-0.32582	-0.00013376	1.4549	0.0005973	1.1291	0.00046353	410.54039800182625	28.153	0.59334	28.001	27.649	28.243	-0.15195					23	14	2	0	0	0	0.02473	1	1627	1627		26.75	0	1	133090	+		23670	36886	16262	16299	27490	27490					-0.006249514052115046
HTHGHWISE	9	Unmodified	_HTHGHWISE_					0	0	0			REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	REV__SLC39A7|p.M461Ifs*9|1|0.23|ENSG00000112473|chr6:33203784-33203785|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.2539672851562	2	552.254497	1102.49444	-0.19964	-0.00011025	-0.33845	-0.00018691	-0.53809	-0.00029716	552.2541224254933	110.25	0.94171	110.26	110.07	111.01	0.005928					52	29	2	0	0	0	0.98128	1	13945	13945		24.203	3.7209	1	48580	+		23671	22005	16263	16300	27491	27491					-0.052706531619151065
HTHPATMLGM	10	Unmodified	_HTHPATMLGM_					0	0	0			REV__ENST00000255183.8_2_20:43287739-43292119:-|nuORF	REV__ENST00000255183.8_2_20:43287739-43292119:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.310302734375	2	548.257336	1094.50012	-0.64413	-0.00035315	-4.0526	-0.0022218	-4.6967	-0.002575	548.2548795170687	67.542	0.83929	67.254	66.832	67.671	-0.28835					36	20	2	0	0	0	0.03519	1	8093	8093		19.997	0	1	123140	+		23672	29539	16264	16301	27492	27492					-0.04335013966101542
HTHPLLPG	8	Unmodified	_HTHPLLPG_					0	0	0		nc|ENSG00000237864|Q6ZN03|LINC00322	nc|ENSG00000237864|Q6ZN03|LINC00322	nc|ENSG00000237864|Q6ZN03|LINC00322	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.93402099609375	2	436.24287	870.471186	0.78311	0.00034162	1.7532	0.00076483	2.5363	0.0011065	436.24441890476555	20.617	0.4448	20.421	20.138	20.582	-0.19577					13	8	3	0	0	0	0.027866	1	552	552		20.482	0	1	10300			23673	18752	16265	16302	27493	27493					0.030769527914344508
HTHQMRIINKY	11	Unmodified	_HTHQMRIINKY_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.7616882324219	3	480.922472	1439.74559	0.28578	0.00013744	1.9985	0.00096114	2.2843	0.0010986	480.9234045135848	18.785	0.54331	18.582	18.361	18.904	-0.20371					30	10	4	0	0	0	0.024834	1	373	373		17.833	9.4259	1	119200	+		23674	22475	16266	16303	27494	27494					0.04330402488267282
HTHTHETL	8	Unmodified	_HTHTHETL_					0	0	0			REV__ENST00000556379.1_1_14:24409898-24409979:-|nuORF	REV__ENST00000556379.1_1_14:24409898-24409979:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.791015625	2	488.235773	974.456993	-0.47872	-0.00023373	-0.26992	-0.00013179	-0.74864	-0.00036551	488.23558485962565	83.633	0.86015	83.543	83.3	84.16	-0.090454					48	19	4	0	0	0	0.027866	1	10463	10463		57.811	25.856	1	1286900	+		23675	35034	16267	16304	27495	27495					-0.03125744427518384
HTHTKSLKRM	10	Unmodified	_HTHTKSLKRM_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	619.8693237304688	2	619.842956	1237.67136	-0.4837	-0.00029982	-2.975	-0.001844	-3.4587	-0.0021439	619.8397100355961	94.466	0.24353	94.344	94.18	94.423	-0.12215					6	5	2	0	0	0	0.03519	1	11656	11656		45.972	8.1607	1	26838	+		23676	23887	16268	16305	27496	27496					0.06203059396716526
HTHTRIYI	8	Unmodified	_HTHTRIYI_					0	0	0			REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7841796875	2	520.785433	1039.55631	0.7045	0.00036689	-3.1524	-0.0016417	-2.4479	-0.0012748	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	1.0338	1	13304	13304		31.955	0	1	3641400	+		23677	31932	16269	16306	27497	27497					0.03811698257209173
HTILLQSIRQG	11	Unmodified	_HTILLQSIRQG_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3693237304688	2	633.369861	1264.72517	-0.36915	-0.00023381	-0.72408	-0.00045861	-1.0932	-0.00069242	633.3692856842331	93.247	1.3144	93.125	92.182	93.497	-0.12215					76	30	4	0	0	0	1.0075	1	11471	11471		35.152	2.3396	1	1726300	+		23678	26836	16270	16307	27498	27498					0.1033955510006308
HTILRLRV	8	Unmodified	_HTILRLRV_					0	0	0		ENST00000262144.10_1_16:74985428-74990395:-|nuORF	ENST00000262144.10_1_16:74985428-74990395:-|nuORF	ENST00000262144.10_1_16:74985428-74990395:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2973327636719	2	504.327268	1006.63998	1.9028	0.00095963	0.61428	0.0003098	2.5171	0.0012694	504.3273106214209	18.699	0.6388	18.699	18.48	19.119	0					17	12	2	0	0	0	0.027866	1	349	349		26.796	15.285	1	21977			23679	11490	16271	16308	27499	27499					0.13692854424948564
HTIMTIGTF	9	Unmodified	_HTIMTIGTF_					0	0	0		ENSG00000176920|ENST00000425340|FUT2;ENSG00000174951|ENST00000645652|FUT1	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27960205078125	2	510.762778	1019.511	-0.28702	-0.0001466	0.82133	0.00041951	0.53431	0.00027291	510.7620111982123	35.412	0.15463	35.197	35.1	35.255	-0.21555					5	3	2	0	0	0	0.023817	1	2677	2677		51.335	1.3109	1	33010			23680	8685	16272	16309	27500	27500					0.002027116798331008
HTIMTIGTF	9	Unmodified	_HTIMTIGTF_					0	0	0		ENSG00000176920|ENST00000425340|FUT2;ENSG00000174951|ENST00000645652|FUT1	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.762778	1019.511	-0.43362	-0.00022148	7.6261	0.0038951	7.1925	0.0036737	510.76665446190054	35.677	0.35129	35.464	35.233	35.584	-0.21246	0.13389	0.003396	NaN	51.335	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86655			23681	8685	16272	16309							0.002027116798331008
HTINLTHSLP	10	Unmodified	_HTINLTHSLP_					0	0	0		nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	566.809105	1131.60366	-0.55537	-0.00031479	-0.78415	-0.00044446	-1.3395	-0.00075926	567.3111577849065	91.861	0.25858	91.853	91.665	91.924	-0.0082855					9	5	2	0	0	0	0.03519	1	11607	11607		26.693	2.1737	1	56549			23682	18854	16273	16310	27501	27501					0.04311932737573443
HTIPTRKV	8	Unmodified	_HTIPTRKV_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.7513732910156	2	476.290351	950.566149	1.0358	0.00049334	-1.217	-0.00057963	-0.18116	-8.6283E-05	476.2894357114563	20.259	0.72742	20.064	19.559	20.286	-0.19577					21	14	2	0	0	0	0.027866	1	538	538		10.866	3.1753	1	86806	+		23683	27198	16274	16311	27502	27502					0.08888886262616325
HTIQHIFL	8	Unmodified	_HTIQHIFL_					0	0	0			REV__nc|ENSG00000221994|Q2M218-2|ZNF630	REV__nc|ENSG00000221994|Q2M218-2|ZNF630	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7842712402344	2	504.784902	1007.55525	0.7232	0.00036506	-2.5366	-0.0012804	-1.8134	-0.00091538	504.78352141815054	98.194	1.3102	98.192	97.68	98.99	-0.0020828					63	30	3	0	0	0	0.46709	1	12460	12460		88.643	6.3378	1	1329300	+		23684	28844	16275	16312	27503	27503					0.05177483888314782
HTIQIRQDW	9	Unmodified	_HTIQIRQDW_					0	0	0		ENSG00000144401|ENST00000411432|METTL21A;nc|ENSG00000144401|Q8WXB1-2|METTL21A;ENST00000471128.1_1_2:208485467-208489843:-|nuORF	ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	598.81103515625	2	598.812179	1195.60981	-1.2779	-0.00076521	0.51482	0.00030828	-0.76306	-0.00045693	598.8124239768687	44.748	0.80012	44.649	44.354	45.154	-0.099445					54	20	4	0	0	0	0.51687	1	4202	4202		58.23	17.452	1	1541900			23685	5734	16276	16313	27504	27504					0.01982450969057936
HTIQIRQDW	9	Unmodified	_HTIQIRQDW_					0	0	0		ENSG00000144401|ENST00000411432|METTL21A;nc|ENSG00000144401|Q8WXB1-2|METTL21A;ENST00000471128.1_1_2:208485467-208489843:-|nuORF	ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	598.8121337890625	2	598.812179	1195.60981	-1.0538	-0.000631	0.37856	0.00022668	-0.6752	-0.00040432	598.8122964078511	44.967	0.96713	44.714	44.391	45.359	-0.25252					65	25	4	0	0	0	0.56934	1	4225	4225		54.776	15.97	1	1654700			23686	5734	16276	16313	27505	27505					0.01982450969057936
HTIQIRQDW	9	Unmodified	_HTIQIRQDW_					0	0	0		ENSG00000144401|ENST00000411432|METTL21A;nc|ENSG00000144401|Q8WXB1-2|METTL21A;ENST00000471128.1_1_2:208485467-208489843:-|nuORF	ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.8121948242188	2	598.812179	1195.60981	-0.8211	-0.00049168	-0.0025969	-1.555E-06	-0.82369	-0.00049324	598.8120808629136	44.945	0.88484	44.733	44.399	45.284	-0.21109					59	23	4	0	0	0	0.30449	1	4219	4219		75.043	32.179	1	1705500			23687	5734	16276	16313	27506	27506					0.01982450969057936
HTIRGPGPG	9	Unmodified	_HTIRGPGPG_					0	0	0			REV__ENST00000528852.5_1_11:66045701-66045848:+|nuORF	REV__ENST00000528852.5_1_11:66045701-66045848:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.23175048828125	2	446.243401	890.472249	0.086393	3.8552E-05	-0.98684	-0.00044037	-0.90044	-0.00040182	446.2435372932956	101.11	0.25089	101.12	101.05	101.3	0.0090332					8	5	2	0	0	0	0.024436	1	12924	12924		30.504	11.144	1	60969	+		23688	34504	16277	16314	27507	27507					0.022631671603335235
HTIRYYSH	8	Unmodified	_HTIRYYSH_					0	0	0			REV__ENSG00000113328|ENST00000340828|CCNG1	REV__ENSG00000113328|ENST00000340828|CCNG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.73828125	2	538.76724	1075.51993	-0.576	-0.00031033	0.7924	0.00042692	0.21639	0.00011659	538.7674623912354	36.767	0.11823	36.55	36.491	36.61	-0.21661					4	2	2	0	0	0	0.027866	1	2909	2909		30.504	0	1	41727	+		23689	22061	16278	16315	27508	27508					-0.014811786394830051
HTIVLVMRFVR	11	Unmodified	_HTIVLVMRFVR_					0	0	0			REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.6088562011719	3	457.607825	1369.80165	0.038465	1.7602E-05	0.15741	7.2032E-05	0.19587	8.9634E-05	457.60809604817155	99.112	1.8989	98.943	97.964	99.863	-0.16863					121	46	4	0	0	0	1.0921	1	12195	12195		13.508	1.5756	1	211670	+		23690	34669	16279	16316	27509	27509					0.13153655395717578
HTIYHARVIP	10	Unmodified	_HTIYHARVIP_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	603.7547607421875	2	603.840739	1205.66693	-1.273	-0.00076866	0.41958	0.00025336	-0.85337	-0.0005153	603.8408812716784	48.299	0.44402	48.023	47.812	48.257	-0.27598					18	11	2	0	0	0	0.03519	1	4740	4740		19.997	0	1	161670			23691	18863	16280	16317	27510	27510					0.07231918245474844
HTKAGDLA	8	Unmodified	_HTKAGDLA_					0	0	0			REV__nc|ENSG00000155719|Q7RTW8-3|OTOA	REV__nc|ENSG00000155719|Q7RTW8-3|OTOA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.73956298828125	2	406.716685	811.418816	1.511	0.00061454	-1.6632	-0.00067647	-0.15226	-6.1926E-05	406.715910505652	62.615	0.6157	62.678	62.483	63.098	0.062763					22	14	2	0	0	0	0.027866	1	7202	7202		25.45	4.9683	1	517410	+		23692	25021	16281	16318	27511	27511					0.005563696578064992
HTKEKVLR	8	Unmodified	_HTKEKVLR_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.26953125	2	505.808908	1009.60326	2.2601	0.0011432	-2.2138	-0.0011197	0.046323	2.3431E-05	505.80763653197954	18.845	0.4452	18.603	18.424	18.869	-0.24256					23	8	4	0	0	0	0.027866	1	327	327		31.53	0	1	127810			23693	4823	16282	16319	27512	27512					0.09884557808379668
HTKERVKL	8	Unmodified	_HTKERVKL_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.8087158203125	2	505.808908	1009.60326	0.63911	0.00032327	-0.67723	-0.00034255	-0.038121	-1.9282E-05	505.8084264033059	18.827	0.49378	18.671	18.445	18.939	-0.15637					22	9	3	0	0	0	1.0198	1	356	356		34.173	0.65696	1	179440			23694	8864	16283	16320	27513	27513					0.098845578083683
HTKGHHLHGC	10	Unmodified	_HTKGHHLHGC_					0	0	0			REV__nc|ENSG00000108883|Q15029-3|EFTUD2	REV__nc|ENSG00000108883|Q15029-3|EFTUD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.769775390625	2	563.769791	1125.52503	-0.2836	-0.00015989	3.1584	0.0017806	2.8748	0.0016207	563.772514571001	39.798	0.19733	39.574	39.462	39.659	-0.22368					5	4	2	0	0	0	0.03519	1	3399	3399		30.318	1.1477	1	44183	+		23695	36558	16284	16321	27514	27514					-0.03271198048491897
HTKILDLLI	9	Unmodified	_HTKILDLLI_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.8145141601562	2	533.336967	1064.65938	0.074237	3.9593E-05	2.7982	0.0014924	2.8724	0.001532	533.3377741902734	104.14	0.37352	103.98	103.85	104.23	-0.16791					14	10	2	0	0	0	0.024405	1	12941	12941		35.618	0	1	99590			23696	3423	16285	16322	27515	27515					0.12963765925201187
HTKIPFINW	9	Unmodified	_HTKIPFINW_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.318359375	2	578.319109	1154.62366	0.42957	0.00024843	-0.53106	-0.00030712	-0.10149	-5.8695E-05	578.3187052588722	68.202	1.5983	67.947	67.367	68.965	-0.25517					82	38	3	0	0	0	0.016871	3	7871	7860;7871;7884		152.47	62.101	1	2218900			23697	2370	16286	16323	27516;27517;27518	27517					0.05253728468164809
HTKIPFINW	9	Unmodified	_HTKIPFINW_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.3186645507812	2	578.319109	1154.62366	-0.16048	-9.281E-05	0.2881	0.00016661	0.12762	7.3805E-05	578.3191441993957	68.172	1.0855	67.938	67.471	68.557	-0.23376					67	26	3	0	0	0	0.20967	1	7877	7877		87.754	20.261	1	2468800			23698	2370	16286	16323	27519	27519					0.05253728468164809
HTKIPFINW	9	Unmodified	_HTKIPFINW_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3186645507812	2	578.319109	1154.62366	-0.061976	-3.5842E-05	-0.037667	-2.1784E-05	-0.099643	-5.7625E-05	578.3189763184934	68.122	1.1786	67.884	67.334	68.512	-0.23814					73	28	3	0	0	0	0.057894	2	7856	7856;7867		125.81	49.04	1	2314700			23699	2370	16286	16323	27520;27521	27520					0.05253728468164809
HTKIRHVDA	9	Unmodified	_HTKIRHVDA_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8018188476562	2	538.801614	1075.58868	0.59888	0.00032268	-0.66205	-0.00035671	-0.06317	-3.4036E-05	538.8012117427492	18.212	0.64061	18.056	17.805	18.445	-0.15637					34	12	4	0	0	0	0.69446	2	281	281;296		46.457	6.3986	1	1015600			23700	5278;17666	16287	16324	27522;27523	27522					0.05390485660223021
HTKIRHVDA	9	Unmodified	_HTKIRHVDA_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8016967773438	2	538.801614	1075.58868	-0.24275	-0.00013079	0.0016123	8.6871E-07	-0.24114	-0.00012993	538.8015707392026	18.243	0.64403	18.039	17.816	18.46	-0.20371					38	12	5	0	0	0	0.45795	2	270	270;279		62.107	5.3864	1	916650			23701	5278;17666	16287	16324	27524;27525	27524					0.05390485660223021
HTKIRHVDA	9	Unmodified	_HTKIRHVDA_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENSG00000145907|ENST00000356245|G3BP1;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2;G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8016967773438	2	538.801614	1075.58868	2.5172	0.0013563	-2.6273	-0.0014156	-0.11011	-5.9327E-05	538.800106546275	18.292	0.99482	18.049	17.825	18.82	-0.24256					46	19	5	0	0	0	0.70156	2	261	249;261		45.972	7.1661	1	807700			23702	5278;17666	16287	16324	27526;27527	27527					0.05390485660223021
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3294067382812	2	567.330539	1132.64652	0.34076	0.00019332	-1.6564	-0.00093973	-1.3156	-0.0007464	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.1265	1	11285	11285		24.519	0	1	4116000	+		23703	28376	16288	16325	27528	27528					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3303833007812	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.1265	2	11487	11487;11547		29.17	3.596	1	13648000	+		23704	28376	16288	16325	27529;27530	27529					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3294677734375	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.1307	1	11536	11536		26.693	3.6504	1	14972000	+		23705	28376	16288	16325	27531	27531					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3298950195312	2	567.330539	1132.64652	-0.57331	-0.00032526	-0.61957	-0.0003515	-1.1929	-0.00067676	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.1088	1	10855	10855		31.53	3.6476	1	5699600	+		23706	28376	16288	16325	27532	27532					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.329833984375	2	567.330539	1132.64652	-1.2298	-0.00069771	-0.35483	-0.00020131	-1.5846	-0.00089901	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.1088	1	11245	11245		31.53	1.2121	1	17705000	+		23707	28376	16288	16325	27533	27533					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.330539	1132.64652	-0.10765	-6.1074E-05	-1.2583	-0.00071388	-1.366	-0.00077496	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.1265	1	10883	10883		24.519	0	1	5896300	+		23708	28376	16288	16325	27534	27534					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.330322265625	2	567.330539	1132.64652	0.14889	8.447E-05	-1.4619	-0.0008294	-1.313	-0.00074493	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.1088	1	10813	10813		31.53	1.2121	1	5699400	+		23709	28376	16288	16325	27535	27535					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297119140625	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.1088	2	11256	11160;11256		31.53	1.0262	1	18337000	+		23710	28376	16288	16325	27536;27537	27537					0.08550747585650242
HTKPRPAL	8	Unmodified	_HTKPRPAL_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1;CABIN1|p.A1972S|1|0.26|ENSG00000099991|chr22:24171869-24171869|G/T|missense_variant;ENST00000485008.1_1_22:24563230-24569157:+|nuORF	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2769775390625	2	460.277244	918.539935	0.047292	2.1767E-05	0.074429	3.4258E-05	0.12172	5.6025E-05	460.2771916807684	20.465	0.83874	20.241	19.973	20.812	-0.22344					24	16	2	0	0	0	0.96719	1	522	522		42.474	3.6683	1	280150			23711	2109	16289	16326	27538	27538					0.07740617091121749
HTKPRPAL	8	Unmodified	_HTKPRPAL_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1;CABIN1|p.A1972S|1|0.26|ENSG00000099991|chr22:24171869-24171869|G/T|missense_variant;ENST00000485008.1_1_22:24563230-24569157:+|nuORF	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	460.277244	918.539935	0.045082	2.075E-05	-0.16484	-7.5874E-05	-0.11976	-5.5123E-05	460.27712185553986	20.34	0.87331	20.172	19.669	20.542	-0.16774	-0.034362	-0.00013814	NaN	42.474	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269550			23712	2109	16289	16326							0.07740617091121749
HTKQRKVLSP	10	Unmodified	_HTKQRKVLSP_					0	0	0			REV__nc|ENSG00000130713|Q13868-3|EXOSC2	REV__nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.359130859375	2	597.359296	1192.70404	-1.2192	-0.0007283	0.00087025	5.1985E-07	-1.2183	-0.00072778	597.3590702861352	98.599	1.5555	98.599	98.19	99.746	0					99	35	4	0	0	0	1.089	1	12592	12592		34.173	8.5985	1	2988700	+		23713	23140	16290	16327	27539	27539					0.11539589791232174
HTKRQVNKMVL	11	Unmodified	_HTKRQVNKMVL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.9325256347656	3	451.930968	1352.77107	1.0842	0.00048999	2.8842	0.0013034	3.9684	0.0017934	451.9321198523276	96.984	2.193	96.984	95.823	98.016	-3.0518E-05					156	50	4	0	0	0	1.0563	1	12380	12380		23.378	0.81632	1	556020	+		23714	25017	16291	16328	27540	27540					0.10879877010688688
HTKRYWWQLYR	11	Unmodified	_HTKRYWWQLYR_					0	0	0			REV__nc|ENSG00000070610|Q9HCG7-2|GBA2	REV__nc|ENSG00000070610|Q9HCG7-2|GBA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.8104248046875	3	546.288031	1635.84226	-1.3075	-0.0007143	3.0446	0.0016632	1.737	0.00094892	546.289723439743	43.553	0.35051	43.334	43.211	43.562	-0.21939					15	9	2	0	0	0	0.024888	1	3997	3997		3.2113	0	1	286680	+		23715	20430	16292	16329	27541	27541					0.04977713039693299
HTKSTYLHRFP	11	Unmodified	_HTKSTYLHRFP_					0	0	0			REV__ENSG00000183035|ENST00000329312|CYLC1	REV__ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2319641113281	3	462.914083	1385.72042	-0.46246	-0.00021408	-3.8714	-0.0017921	-4.3338	-0.0020062	462.9124387831168	28.74	0.62347	28.736	28.499	29.122	-0.0042019					19	14	2	0	0	0	0.024834	1	1688	1688		12.957	3.7457	1	147510	+		23716	27528	16293	16330	27542	27542					0.042986709573142434
HTKVLQLSSRP	11	Unmodified	_HTKVLQLSSRP_					0	0	0			REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3701782226562	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.9728	2	11912	11912;11923		42.864	6.4175	1	9245900	+		23717	35895	16294	16331	27543;27544	27543					0.10339555100085818
HTKVLQLSSRP	11	Unmodified	_HTKVLQLSSRP_					0	0	0			REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.37060546875	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.70358	2	11884	11884;12057		63.534	20.67	1	9528000	+		23718	35895	16294	16331	27545;27546	27545					0.10339555100085818
HTKYPQLLLGI	11	Unmodified	_HTKYPQLLLGI_					0	0	0		ENST00000420053.1_1_2:105012170-105012470:-|nuORF	ENST00000420053.1_1_2:105012170-105012470:-|nuORF	ENST00000420053.1_1_2:105012170-105012470:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.883056640625	2	641.87953	1281.74451	1.496	0.00096027	2.9831	0.0019148	4.4792	0.0028751	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	0.84811	1	12234	12234		54.776	8.8041	1	2979200			23719	13964	16295	16332	27547	27547					0.11490511391002656
HTKYPQLLLGI	11	Unmodified	_HTKYPQLLLGI_					0	0	0		ENST00000420053.1_1_2:105012170-105012470:-|nuORF	ENST00000420053.1_1_2:105012170-105012470:-|nuORF	ENST00000420053.1_1_2:105012170-105012470:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.882080078125	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	0.95124	1	11926	11926		47.657	9.8458	1	3421300			23720	13964	16295	16332	27548	27548					0.11490511391002656
HTLAAWIC	8	Unmodified	_HTLAAWIC_					0	0	0			REV__ENST00000425416.6_2_2:11966976-11967150:+|nuORF	REV__ENST00000425416.6_2_2:11966976-11967150:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2643737792969	2	457.73128	913.448008	-0.035055	-1.6046E-05	1.8284	0.00083694	1.7934	0.00082089	457.7323209958203	81.677	0.56843	81.677	81.341	81.909	0					16	13	2	0	0	0	0.027866	1	10155	10155		39.021	0.21535	1	58509	+		23721	32252	16296	16333	27549	27549					-0.012178093175521099
HTLAEREV	8	Unmodified	_HTLAEREV_					0	0	0			REV__ENSG00000197213|ENST00000586855|ZSCAN5B	REV__ENSG00000197213|ENST00000586855|ZSCAN5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.75360107421875	2	477.753798	953.493044	0.17168	8.2021E-05	0.90353	0.00043166	1.0752	0.00051369	477.75388754766334	19.533	0.97583	19.414	18.756	19.731	-0.11872					43	19	4	0	0	0	1.0009	1	417	417		37.159	3.6435	1	194280	+		23722	28277	16297	16334	27550	27550					0.014437127493351909
HTLAFRWQD	9	Unmodified	_HTLAFRWQD_					0	0	0			REV__ENST00000590519.2_1_19:33149896-33166702:-|nuORF	REV__ENST00000590519.2_1_19:33149896-33166702:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	586.303955078125	2	587.293622	1172.57269	-1.5725	-0.0009235	3.5507	0.0020853	1.9782	0.0011618	587.2960805016679	75.989	0.95558	75.989	75.844	76.799	0					50	23	3	0	0	0	0.024397	1	9355	9355		31.53	0	1	199640	+		23723	35704	16298	16335	27551	27551					-0.006692205766739789
HTLENQREF	9	Unmodified	_HTLENQREF_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.2861328125	2	587.285994	1172.55744	-0.7702	-0.00045233	0.59017	0.0003466	-0.18002	-0.00010572	587.2862793506497	30.86	0.78546	30.619	30.326	31.112	-0.24109					50	18	4	0	0	0	0.077175	2	2009	1997;2009		118.74	44.488	1	1878800			23724	9894	16299	16336	27552;27553	27553					-0.021941321645272183
HTLENQREF	9	Unmodified	_HTLENQREF_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.2860107421875	2	587.285994	1172.55744	-1.3375	-0.00078549	0.99618	0.00058504	-0.34131	-0.00020045	587.2864714950593	30.739	0.85944	30.561	30.283	31.142	-0.17818					55	20	4	0	0	0	0.39228	2	1980	1980;1992		66.429	20.457	1	1679900			23725	9894	16299	16336	27554;27555	27554					-0.021941321645272183
HTLENQREF	9	Unmodified	_HTLENQREF_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.2859497070312	2	587.285994	1172.55744	-0.71285	-0.00041865	0.50586	0.00029709	-0.20699	-0.00012156	587.2861907157906	30.799	0.78315	30.646	30.341	31.124	-0.15231					52	18	4	0	0	0	0.17822	3	1979	1966;1979;1991		93.195	36.268	1	1624700			23726	9894	16299	16336	27556;27557;27558	27557					-0.021941321645272183
HTLFAGTG	8	Unmodified	_HTLFAGTG_					0	0	0			REV__nc|ENSG00000186049|Q86Y46-2|KRT73	REV__nc|ENSG00000186049|Q86Y46-2|KRT73	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.20574951171875	2	402.205953	802.397353	0.85638	0.00034444	-1.7043	-0.00068547	-0.8479	-0.00034103	402.2052083095665	95.436	1.7876	95.439	94.87	96.657	0.0033722					115	41	4	0	0	0	1.0239	1	12123	12123		33.516	1.5607	1	7412800	+	+	23727	37022	16300	16337	27559	27559					-0.011750153709044753
HTLFAGTG	8	Unmodified	_HTLFAGTG_					0	0	0			REV__nc|ENSG00000186049|Q86Y46-2|KRT73	REV__nc|ENSG00000186049|Q86Y46-2|KRT73	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.205810546875	2	402.205953	802.397353	0.92344	0.00037141	-1.6792	-0.00067539	-0.75578	-0.00030398	402.2052180634848	96.013	2.0859	95.876	95.199	97.285	-0.1367					136	47	4	0	0	0	1.0338	1	11845	11845		31.955	3.7006	1	5342800	+	+	23728	37022	16300	16337	27560	27560					-0.011750153709044753
HTLFAGTG	8	Unmodified	_HTLFAGTG_					0	0	0			REV__nc|ENSG00000186049|Q86Y46-2|KRT73	REV__nc|ENSG00000186049|Q86Y46-2|KRT73	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.2058410644531	2	402.205953	802.397353	1.7592	0.00070757	-2.5436	-0.0010231	-0.78442	-0.0003155	402.2048705868518	96.086	1.5954	95.963	95.334	96.929	-0.12305					112	36	4	0	0	0	0.97924	2	11889	11842;11889		40.573	1.7665	1	4914300	+	+	23729	37022	16300	16337	27561;27562	27562					-0.011750153709044753
HTLFAGTG	8	Unmodified	_HTLFAGTG_					0	0	0			REV__nc|ENSG00000186049|Q86Y46-2|KRT73	REV__nc|ENSG00000186049|Q86Y46-2|KRT73	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.2055969238281	2	402.205953	802.397353	-0.56388	-0.0002268	-0.30876	-0.00012418	-0.87264	-0.00035098	402.20578555267815	96.135	1.8234	95.979	95.4	97.223	-0.15646					111	41	4	0	0	0	1.0239	1	11882	11882		33.516	1.5607	1	4321200	+	+	23730	37022	16300	16337	27563	27563					-0.011750153709044753
HTLFSLLGL	9	Unmodified	_HTLFSLLGL_					0	0	0		ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.79705810546875	2	500.794935	999.575317	-0.32576	-0.00016314	4.3199	0.0021634	3.9942	0.0020003	500.7983165331858	93.371	1.1756	93.227	92.914	94.09	-0.1441					73	26	5	0	0	0	0.92825	1	11464	11464		30.504	0.6621	1	1859500			23731	9686	16301	16338	27564	27564					0.07551234828292763
HTLGQALR	8	Unmodified	_HTLGQALR_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2583923339844	2	448.259051	894.503549	0.41659	0.00018674	-0.5403	-0.00024219	-0.12371	-5.5455E-05	448.25867764123615	89.029	1.3807	89.029	88.555	89.936	0					85	32	4	0	0	0	1.0574	1	11202	11202		26.796	1.3459	1	7392500	+		23732	26922	16302	16339	27565	27565					0.05207740194418875
HTLGRIILN	9	Unmodified	_HTLGRIILN_					0	0	0		TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.816733	1035.61891	-0.16784	-8.7079E-05	2.6622	0.0013812	2.4944	0.0012941	518.81834420653	102.62	0.13173	102.62	102.5	102.64	-0.0046005					4	2	2	0	0	0	0.024523	1	13060	13060		15.642	0	1	137320			23733	38057	16303	16340	27566	27566					0.10252844325441401
HTLGRPGL	8	Unmodified	_HTLGRPGL_					0	0	0			REV__ENST00000337190.6_1_4:2251252-2251459:-|nuORF	REV__ENST00000337190.6_1_4:2251252-2251459:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.7481689453125	2	425.748319	849.482085	-0.66646	-0.00028374	0.80329	0.000342	0.13683	5.8256E-05	425.74862788882973	26.178	2.1616	26.014	25.674	27.835	-0.16331					138	55	4	0	0	0	1.0338	1	1337	1337		31.955	0	1	14509000	+		23734	30556	16304	16341	27567	27567					0.05132355165721947
HTLICFVF	8	Unmodified	_HTLICFVF_					0	0	0			REV__nc|ENSG00000003400|Q92851-6|CASP10	REV__nc|ENSG00000003400|Q92851-6|CASP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2579345703125	2	490.257131	978.499709	-0.31257	-0.00015324	2.0129	0.00098682	1.7003	0.00083358	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	0.94001	1	13108	13108		46.766	9.738	1	4889800	+		23735	19771	16305	16342	27568	27568					0.00959934376351157
HTLKVVLVPL	10	Unmodified	_HTLKVVLVPL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.8160400390625	2	559.868434	1117.72232	-0.00079519	-4.452E-07	0.91013	0.00050955	0.90933	0.00050911	559.8697560029933	80.867	0.1172	80.629	80.569	80.686	-0.23784					4	2	2	0	0	0	0.03519	1	9698	9698		10.866	0.6003	1	126470	+		23736	21364	16306	16343	27569	27569					0.1681633171322119
HTLLEPSKIL	10	Unmodified	_HTLLEPSKIL_					0	0	0			REV__ENST00000414608.1_1_7:65246370-65266901:+|nuORF	REV__ENST00000414608.1_1_7:65246370-65266901:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8433837890625	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	1.0616	1	10803	10803		37.812	0.65241	1	1877500	+		23737	32041	16307	16344	27570	27570					0.10690847091291289
HTLLEPTVLPE	11	Unmodified	_HTLLEPTVLPE_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	416.89849853515625	3	416.899328	1247.67615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.737	1	15.793	15.293	16.293	0.055788								0	0	0	1.6247	1	35	35		9.6461	2.2464	1				23738	1299	16308	16345	27571	27571					0.06222222020460322
HTLLPEPLE	9	Unmodified	_HTLLPEPLE_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7896728515625	2	524.787307	1047.56006	0.40697	0.00021357	1.8145	0.0009522	2.2214	0.0011658	524.7894425834991	99.78	0.8173	99.645	99.013	99.83	-0.13526					51	20	5	0	0	0	0.83071	1	12354	12354		37.159	0.71236	1	233890	+		23739	28736	16309	16346	27572	27572					0.038183232404207956
HTLLPEPLE	9	Unmodified	_HTLLPEPLE_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.787307	1047.56006	-0.21578	-0.00011324	3.4226	0.0017961	3.2068	0.0016829	524.789927567629	99.844	0.60077	99.854	99.401	100	0.010109	0.10469	0.00096622	NaN	37.159	40	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420920	+		23740	28736	16309	16346							0.038183232404207956
HTLLPEPLE	9	Unmodified	_HTLLPEPLE_					0	0	0			REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	REV__nc|ENSG00000213390|Q14CB8-5|ARHGAP19	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	524.787307	1047.56006	0.40697	0.00021357	1.8145	0.0009522	2.2214	0.0011658	524.7894425834991	99.78	0.8173	99.645	99.013	99.83	-0.13526	-0.10469	-0.00072161	NaN	37.159	51	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233890	+		23741	28736	16309	16346							0.038183232404207956
HTLLYIRQFIL	11	Unmodified	_HTLLYIRQFIL_					0	0	0		nc|ENSG00000231205|Q6ZT77|ZNF826P;ENST00000502675.1_19:20577295-20577979:-|nuORF	nc|ENSG00000231205|Q6ZT77|ZNF826P	nc|ENSG00000231205|Q6ZT77|ZNF826P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2842102050781	3	472.950245	1415.82891	0.61337	0.00029009	3.3909	0.0016037	4.0043	0.0018938	472.9523280385678	99.058	0.22165	99.068	98.913	99.135	0.010231					5	4	2	0	0	0	0.024821	1	12607	12607		9.6461	1.8416	1	14200			23742	15674	16310	16347	27573	27573					0.13762462207751014
HTLLYQKV	8	Unmodified	_HTLLYQKV_					0	0	0			REV__ENST00000373222.3_1_20:40125942-40126167:-|nuORF	REV__ENST00000373222.3_1_20:40125942-40126167:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2896728515625	2	501.292559	1000.57057	-0.32298	-0.00016191	-3.2597	-0.0016341	-3.5827	-0.001796	501.2905862857756	88.352	1.9534	88.181	87.855	89.808	-0.17053					95	46	4	0	0	0	0.97924	1	10829	10829		40.573	3.4135	1	1265500	+		23743	31245	16311	16348	27574	27574					0.07030350685522535
HTLPFYFV	8	Unmodified	_HTLPFYFV_					0	0	0			REV__ENSG00000149506|ENST00000278853|ZP1	REV__ENSG00000149506|ENST00000278853|ZP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.270751953125	2	512.268553	1022.52255	0.53902	0.00027612	4.0202	0.0020594	4.5592	0.0023356	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	0.98906	1	13276	13276		39.021	1.21	1	5030900	+		23744	24684	16312	16349	27575	27575					0.012192767654710224
HTLQYWKD	8	Unmodified	_HTLQYWKD_					0	0	0		nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8	nc|ENSG00000050438|Q2Y0W8-8|SLC4A8	nc|ENSG00000050438|Q2Y0W8-8|SLC4A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.816650390625	2	545.769448	1089.52434	-0.08524	-4.6522E-05	-0.63604	-0.00034713	-0.72128	-0.00039365	545.7688762979226	54.393	0.36603	54.491	54.294	54.66	0.098015					17	10	2	0	0	0	0.027866	1	5863	5863		24.203	0	1	119750			23745	1142	16313	16350	27576	27576					-0.01683714216574117
HTLQYWKD	8	Unmodified	_HTLQYWKD_					0	0	0		nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8	nc|ENSG00000050438|Q2Y0W8-8|SLC4A8	nc|ENSG00000050438|Q2Y0W8-8|SLC4A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	545.769448	1089.52434	-1.1361	-0.00062006	-0.66322	-0.00036196	-1.7993	-0.00098202	545.7692487227741	54.658	0.37653	54.658	54.492	54.869	0	0.061076	-0.0005427	NaN	29.15	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175490			23746	1142	16313	16350							-0.01683714216574117
HTLQYWKD	8	Unmodified	_HTLQYWKD_					0	0	0		nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8	nc|ENSG00000050438|Q2Y0W8-8|SLC4A8	nc|ENSG00000050438|Q2Y0W8-8|SLC4A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.769448	1089.52434	-0.73444	-0.00040084	1.3568	0.00074049	0.62233	0.00033965	546.2715774849377	54.792	0.55543	54.642	54.339	54.894	-0.15036	0.045115	0.0016622	NaN	29.15	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161760			23747	1142	16313	16350							-0.01683714216574117
HTLRALRNTL	10	Unmodified	_HTLRALRNTL_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.856689453125	2	597.856921	1193.69929	-0.69485	-0.00041542	-0.48603	-0.00029058	-1.1809	-0.000706	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	1.0508	1	11687	11687		39.253	2.8061	1	4386000			23748	10117	16314	16351	27577	27577					0.11018705648439209
HTLRALRNTL	10	Unmodified	_HTLRALRNTL_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563842773438	2	597.856921	1193.69929	-0.56215	-0.00033608	-0.78641	-0.00047016	-1.3486	-0.00080624	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	0.96965	2	11433	11398;11433		49.442	11.63	1	5880700			23749	10117	16314	16351	27578;27579	27579					0.11018705648439209
HTLRANKLH	9	Unmodified	_HTLRANKLH_					0	0	0			REV__nc|ENSG00000099625|Q8N350-4|CBARP	REV__nc|ENSG00000099625|Q8N350-4|CBARP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3162841796875	2	545.317432	1088.62031	-0.30292	-0.00016519	-1.1181	-0.00060972	-1.421	-0.00077491	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.92825	2	10944	10944;11066		30.504	1.3541	1	17068000	+		23750	21008	16315	16352	27580;27581	27580					0.07954478414171717
HTLRARLAPA	10	Unmodified	_HTLRARLAPA_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.332275390625	2	553.333082	1104.65161	0.24251	0.00013419	-1.3773	-0.0007621	-1.1348	-0.00062791	553.3321684369349	95.389	1.2262	95.393	95.009	96.235	0.0041199					91	28	4	0	0	0	1.0992	1	12071	12071		32.812	7.2384	1	4195000	+		23751	23574	16316	16353	27582	27582					0.10347051448275124
HTLRARLAPA	10	Unmodified	_HTLRARLAPA_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.3321533203125	2	553.333082	1104.65161	0.59374	0.00032854	-1.8103	-0.0010017	-1.2166	-0.00067318	553.3319086030377	95.481	1.1629	95.358	94.985	96.148	-0.12251					95	26	5	0	0	0	1.1286	1	11800	11800		25.574	1.0549	1	4038100	+		23752	23574	16316	16353	27583	27583					0.10347051448275124
HTLRARLAPA	10	Unmodified	_HTLRARLAPA_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.332275390625	2	553.333082	1104.65161	-0.4027	-0.00022283	-0.84059	-0.00046513	-1.2433	-0.00068795	553.332456575769	95.559	1.4151	95.408	95.012	96.427	-0.15186					99	32	5	0	0	0	1.1307	1	11773	11773		26.693	2.1737	1	3966700	+		23753	23574	16316	16353	27584	27584					0.10347051448275124
HTLRMIALVL	10	Unmodified	_HTLRMIALVL_					0	0	0		ENST00000432329.6_1_2:208464230-208464308:+|nuORF	ENST00000432329.6_1_2:208464230-208464308:+|nuORF	ENST00000432329.6_1_2:208464230-208464308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.8590087890625	2	583.857544	1165.70053	1.3634	0.00079603	0.85502	0.00049921	2.2184	0.0012952	583.8578996469528	97.062	1.11	97.062	96.705	97.815	-3.0518E-05					72	24	5	0	0	0	1.0992	1	12288	12288		32.812	6.1195	1	1447700			23754	14201	16317	16354	27585	27585					0.12431203692995041
HTLRRRELD	9	Unmodified	_HTLRRRELD_					0	0	0		ENST00000502375.1_1_1:183442081-183442949:+|nuORF	ENST00000502375.1_1_1:183442081-183442949:+|nuORF	ENST00000502375.1_1_1:183442081-183442949:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	597.8556518554688	2	598.336353	1194.65815	-0.36901	-0.00022079	-3.463	-0.002072	-3.832	-0.0022928	598.3341265709113	91.321	0.67596	91.332	91.114	91.79	0.011276					37	15	3	0	0	0	0.024447	1	11474	11474		40.778	14.085	1	358720			23755	15667	16318	16355	27586	27586					0.0686094460897948
HTLSFHPCLP	10	Unmodified	_HTLSFHPCLP_					0	0	0		ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.3079223632812	2	576.286951	1150.55935	0.17688	0.00010194	0.39593	0.00022817	0.57282	0.00033011	576.7893070913104	74.865	0.24138	74.59	74.479	74.72	-0.27573					8	5	2	0	0	0	0.03519	1	8834	8834		16.473	0	1	107850			23756	13853	16319	16356	27587	27587					-0.009907946802741208
HTLSRNSVL	9	Unmodified	_HTLSRNSVL_					0	0	0			REV__ENSG00000171487|ENST00000390649|NLRP5	REV__ENSG00000171487|ENST00000390649|NLRP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3031005859375	2	513.788173	1025.56179	0.17893	9.1933E-05	-2.0958	-0.0010768	-1.9168	-0.00098485	513.7875044390104	37.056	0.73101	36.863	36.578	37.309	-0.193					27	18	2	0	0	0	0.024447	1	2995	2995		40.778	12.896	1	99221	+		23757	26570	16320	16357	27588	27588					0.05003377049047231
HTLSRNSVL	9	Unmodified	_HTLSRNSVL_					0	0	0			REV__ENSG00000171487|ENST00000390649|NLRP5	REV__ENSG00000171487|ENST00000390649|NLRP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.788173	1025.56179	-0.77431	-0.00039783	-0.91213	-0.00046864	-1.6864	-0.00086647	513.7879086703012	37.073	0.46703	36.853	36.647	37.114	-0.2195	-0.033167	0.00069052	NaN	40.778	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86181	+		23758	26570	16320	16357							0.05003377049047231
HTLTRYLVG	9	Unmodified	_HTLTRYLVG_					0	0	0			REV__ENSG00000140948|ENST00000671377|ZCCHC14	REV__ENSG00000140948|ENST00000671377|ZCCHC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8138427734375	2	530.300916	1058.58728	-0.21007	-0.0001114	-2.7635	-0.0014655	-2.9735	-0.0015769	530.2997433830567	29.465	0.45546	29.315	29.087	29.542	-0.14952					17	10	2	0	0	0	0.024457	1	1768	1768		29.15	0	1	42670	+		23759	24051	16321	16358	27589	27589					0.06032851571490028
HTLVQLYLV	9	Unmodified	_HTLVQLYLV_					0	0	0			REV__ENST00000479091.1_1_2:239072957-239076527:+|nuORF	REV__ENST00000479091.1_1_2:239072957-239076527:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.7796630859375	2	543.321317	1084.62808	-1.1558	-0.00062795	-2.8811	-0.0015654	-4.0369	-0.0021933	543.3197197619679	35.071	0.38022	34.884	34.76	35.14	-0.18675					16	9	2	0	0	0	0.024487	1	2653	2653		11.511	0	1	99708	+		23760	33386	16322	16359	27590	27590					0.08915192891072365
HTLYSRTES	9	Unmodified	_HTLYSRTES_					0	0	0		ENST00000321871.10_1_3:132764810-132948118:+|nuORF	ENST00000321871.10_1_3:132764810-132948118:+|nuORF	ENST00000321871.10_1_3:132764810-132948118:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.830810546875	2	547.26727	1092.51999	0.16082	8.801E-05	4.0201	0.0022001	4.181	0.0022881	547.2687577257215	18.651	0.24762	18.447	18.262	18.51	-0.20371					7	4	2	0	0	0	0.024447	1	307	307		13.454	4.2711	1	26808			23761	12213	16323	16360	27591	27591					-0.022572234301378558
HTLYSRTES	9	Unmodified	_HTLYSRTES_					0	0	0		ENST00000321871.10_1_3:132764810-132948118:+|nuORF	ENST00000321871.10_1_3:132764810-132948118:+|nuORF	ENST00000321871.10_1_3:132764810-132948118:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.26727	1092.51999	2.005	0.0010973	10.796	0.0059082	12.801	0.0070054	547.273294403178	18.344	0.48871	18.344	18.186	18.674	0	-0.051486	0.0016891	NaN	13.454	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14493			23762	12213	16323	16360							-0.022572234301378558
HTMKLNQV	8	Unmodified	_HTMKLNQV_					0	0	0		ENST00000509377.1_3_4:77172961-77230323:+|nuORF;nc|ENSG00000189157|Q6ZV65-2|FAM47E;nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3118591308594	2	485.760569	969.506586	-1.1887	-0.00057744	-1.6343	-0.00079386	-2.823	-0.0013713	485.7592857850549	43.967	0.44709	43.967	43.8	44.247	0					19	12	2	0	0	0	0.027866	1	4166	4166		45.952	0	1	237960			23763	15803	16324	16361	27592	27592					0.02061247256938259
HTNEVNAIKW	10	Unmodified	_HTNEVNAIKW_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	606.3142700195312	2	606.312012	1210.60947	-0.11048	-6.6986E-05	3.1864	0.001932	3.0759	0.001865	606.3137867340337	78.604	0.97214	78.373	78.091	79.064	-0.23141					52	22	4	0	0	0	0.88978	1	9389	9389		54.722	1.6334	1	1041300			23764	2353	16325	16362	27593	27593					0.012590312492193334
HTNGPKKKKVT	11	Unmodified	_HTNGPKKKKVT_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;ENST00000470959.1_1_3:47868940-47872365:+|nuORF;ENST00000441384.5_1_3:47852163-47883242:+|nuORF	nc|ENSG00000132153|Q7L2E3-3|DHX30;ENST00000441384.5_1_3:47852163-47883242:+|nuORF	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8707885742188	2	619.372404	1236.73025	0.41006	0.00025398	-2.9921	-0.0018532	-2.582	-0.0015992	619.3705610213385	100.17	0.77786	100.03	99.755	100.53	-0.13364					55	22	3	0	0	0	1.0521	1	12437	12437		24.519	0.99649	1	1373000			23765	4576;14360	16326	16363	27594	27594					0.12135858962687962
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3688354492188	2	633.369861	1264.72517	0.38898	0.00024637	-1.5913	-0.0010079	-1.2023	-0.00076153	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	1.0075	1	11903	11903		35.152	2.4015	1	3178500			23766	8962	16327	16364	27595	27595					0.10339555100085818
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3701171875	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.98542	1	12026	12026		40.058	2.2467	1	9245900			23767	8962	16327	16364	27596	27596					0.10339555100085818
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3694458007812	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	1.013	1	11859	11859		33.922	2.2874	1	9528000			23768	8962	16327	16364	27597	27597					0.10339555100085818
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.58197021484375	3	422.582333	1264.72517	0.90621	0.00038295	-1.6914	-0.00071474	-0.78516	-0.00033179	422.58153013425874	95.949	3.134	95.826	94.641	97.774	-0.12305					212	71	4	0	0	0	1.0748	1	11934	11934		11.932	0.29645	1	631120			23769	8962	16327	16364	27598	27598					0.10339555100085818
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.58209228515625	3	422.582333	1264.72517	0.051062	2.1578E-05	-0.96778	-0.00040897	-0.91672	-0.00038739	422.58183891194597	96.092	3.0594	95.935	94.749	97.808	-0.15646					209	69	4	0	0	0	1.0685	1	11853	11853		17.833	1.3033	1	593240			23770	8962	16327	16364	27599	27599					0.10339555100085818
HTNKKPKS	8	Unmodified	_HTNKKPKS_					0	0	0		nc|ENSG00000148842|Q9H8M5-3|CNNM2	nc|ENSG00000148842|Q9H8M5-3|CNNM2	nc|ENSG00000148842|Q9H8M5-3|CNNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.27227783203125	2	470.272158	938.529764	-0.047033	-2.2118E-05	-0.02984	-1.4033E-05	-0.076872	-3.6151E-05	470.2720597866912	91.389	1.7988	91.249	90.823	92.622	-0.13942					104	42	5	0	0	0	1.0284	1	11175	11175		32.812	6.0163	1	5353800			23771	18372	16328	16365	27600	27600					0.05804009365908769
HTNLLLLQ	8	Unmodified	_HTNLLLLQ_					0	0	0			REV__ENST00000497960.5_1_22:45560109-45567681:+|nuORF	REV__ENST00000497960.5_1_22:45560109-45567681:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	476.28521728515625	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.11	1	101.98	101.48	102.48	-0.12931								0	0	0	0.92657	1	12675	12675		25.45	0	1		+		23772	33864	16329	16366	27601	27601					0.07766064168481535
HTNPKWQL	8	Unmodified	_HTNPKWQL_					0	0	0		nc|ENSG00000196932|Q6ZUK4-2|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.270751953125	2	512.272158	1022.52976	-0.23912	-0.0001225	-2.1173	-0.0010846	-2.3564	-0.0012071	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	1.0516	1	13630	13630		29.15	1.0681	1	6463600			23773	18632	16330	16367	27602	27602					0.019400093658987316
HTNPKWQL	8	Unmodified	_HTNPKWQL_					0	0	0		nc|ENSG00000196932|Q6ZUK4-2|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2708740234375	2	512.272158	1022.52976	-0.053609	-2.7462E-05	-2.4832	-0.0012721	-2.5368	-0.0012995	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	1.043	1	13305	13305		30.504	1.3541	1	4944800			23774	18632	16330	16367	27603	27603					0.019400093658987316
HTNPVGTEW	9	Unmodified	_HTNPVGTEW_					0	0	0		ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7422485351562	2	520.743431	1039.47231	-0.77237	-0.00040221	-0.27597	-0.00014371	-1.0483	-0.00054591	520.7431952018147	43.737	0.80548	43.632	43.363	44.168	-0.10468					57	21	4	0	0	0	0.077175	1	4039	4039		118.74	47.365	1	1863000			23775	10233	16331	16368	27604	27604					-0.04584877630327355
HTNPVGTEW	9	Unmodified	_HTNPVGTEW_					0	0	0		ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7427368164062	2	520.743431	1039.47231	-0.71365	-0.00037163	-0.22047	-0.00011481	-0.93411	-0.00048643	520.7432120015616	43.915	0.94738	43.67	43.378	44.326	-0.2444					64	25	5	0	0	0	0.1158	1	4051	4051		107.01	39.514	1	1850600			23776	10233	16331	16368	27605	27605					-0.04584877630327355
HTNPVGTEW	9	Unmodified	_HTNPVGTEW_					0	0	0		ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7435302734375	2	520.743431	1039.47231	-0.82855	-0.00043146	-0.16992	-8.8483E-05	-0.99847	-0.00051994	520.743198447657	43.901	0.75597	43.681	43.42	44.176	-0.21939					55	20	4	0	0	0	0.28753	1	4051	4051		77.318	5.9397	1	1987100			23777	10233	16331	16368	27606	27606					-0.04584877630327355
HTNQDHVHAVW	11	Unmodified	_HTNQDHVHAVW_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;nc|ENSG00000116830|Q9UNY4-2|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.26171875	3	448.54617	1342.61668	-0.35642	-0.00015987	0.10475	4.6985E-05	-0.25167	-0.00011288	448.5462800840732	31.418	0.60822	31.266	31.006	31.615	-0.15231					36	15	3	0	0	0	0.024792	1	2065	2065		18.531	9.3192	1	172190			23778	3583	16332	16369	27607	27607					-0.04092236150336248
HTNQHLLLAS	10	Unmodified	_HTNQHLLLAS_					0	0	0			REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.329833984375	2	567.306729	1132.59891	-0.24541	-0.00013922	-2.5965	-0.001473	-2.8419	-0.0016122	567.808225651129	90.461	0.21088	90.444	90.36	90.571	-0.016708					7	4	2	0	0	0	0.03519	1	11415	11415		31.53	0	1	78218	+		23779	23133	16333	16370	27608	27608					0.03791048594825952
HTNQHLLLAS	10	Unmodified	_HTNQHLLLAS_					0	0	0			REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3297119140625	2	567.306729	1132.59891	-0.61205	-0.00034722	-2.3519	-0.0013343	-2.964	-0.0016815	567.3050051371443	90.51	0.16782	90.385	90.249	90.416	-0.12513					5	3	2	0	0	0	0.03519	1	11091	11091		39.253	14.734	1	72991	+		23780	23133	16333	16370	27609	27609					0.03791048594825952
HTNQHLLLAS	10	Unmodified	_HTNQHLLLAS_					0	0	0			REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3296508789062	2	567.306729	1132.59891	-0.56574	-0.00032095	-2.2808	-0.0012939	-2.8465	-0.0016149	567.3047829582838	90.733	0.1702	90.608	90.459	90.629	-0.12512					6	3	2	0	0	0	0.03519	1	11115	11115		31.53	0	1	88106	+		23781	23133	16333	16370	27610	27610					0.03791048594825952
HTNTLLKVI	9	Unmodified	_HTNTLLKVI_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.819091796875	2	519.818941	1037.62333	0.12518	6.5073E-05	-0.67539	-0.00035108	-0.55021	-0.00028601	519.8186456583804	71.282	0.99471	71.282	70.909	71.904	0					100	25	5	0	0	0	0.82115	1	8672	8672		37.812	0.65241	1	28736000	+		23782	25545	16334	16371	27611	27611					0.10602308748320866
HTNVDGLN	8	Unmodified	_HTNVDGLN_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2112731933594	2	435.209224	868.403895	0.71956	0.00031316	0.71298	0.0003103	1.4325	0.00062345	435.20897636286816	99.071	1.6509	98.936	98.026	99.677	-0.13526					76	39	3	0	0	0	1.0009	1	12268	12268		37.159	0	1	208370			23783	5771	16335	16372	27612	27612					-0.03557122210190755
HTNVFKVL	8	Unmodified	_HTNVFKVL_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1;ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27777099609375	2	479.279452	956.544351	0.51465	0.00024666	-4.4703	-0.0021425	-3.9557	-0.0018959	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.95679	2	10485	10341;10485		44.117	3.6634	1	4752300			23784	8135	16336	16373	27613;27614	27614					0.0643408151404401
HTNVFKVL	8	Unmodified	_HTNVFKVL_					0	0	0		ENSG00000171241|ENST00000303383|SHCBP1;ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENSG00000171241|ENST00000303383|SHCBP1	ENSG00000171241|ENST00000303383|SHCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.278564453125	2	479.279452	956.544351	-0.56358	-0.00027011	-3.3047	-0.0015839	-3.8683	-0.001854	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.89627	2	10390	10318;10390		51.335	1.7994	1	4947400			23785	8135	16336	16373	27615;27616	27616					0.0643408151404401
HTNWEGDE	8	Unmodified	_HTNWEGDE_					0	0	0			REV__ENST00000262061.6_1_12:54745315-54745399:+|nuORF	REV__ENST00000262061.6_1_12:54745315-54745399:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3012390136719	2	494.193771	986.372988	0.84594	0.00041806	-3.2765	-0.0016192	-2.4306	-0.0012012	494.1920949962613	96.106	0.11913	96.108	96.035	96.154	0.0020752					4	2	2	0	0	0	0.027866	1	12166	12166		35.618	22.659	1	54645	+		23786	29648	16337	16374	27617	27617					-0.12074320315082332
HTPASGPLSV	10	Unmodified	_HTPASGPLSV_					0	0	0		ENST00000504956.5_1_4:87856214-87968836:+|nuORF;nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	ENST00000504956.5_1_4:87856214-87968836:+|nuORF	ENST00000504956.5_1_4:87856214-87968836:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2632141113281	2	483.256174	964.497795	-1.1547	-0.00055801	-1.8355	-0.00088702	-2.9902	-0.001445	483.25554784688177	37.925	0.4134	37.842	37.57	37.984	-0.082516					18	11	2	0	0	0	0.03519	1	3116	3116		49.442	7.0454	1	185040			23787	8283	16338	16375	27618	27618					0.014125968921121057
HTPGTVRK	8	Unmodified	_HTPGTVRK_					0	0	0		ENST00000199448.8_2_7:37960242-37960533:+|nuORF	ENST00000199448.8_2_7:37960242-37960533:+|nuORF	ENST00000199448.8_2_7:37960242-37960533:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2584228515625	2	448.259051	894.503549	-0.21973	-9.8495E-05	-0.025537	-1.1447E-05	-0.24526	-0.00010994	448.2589085096466	89.199	1.7144	89.071	88.532	90.246	-0.12774					103	40	5	0	0	0	1.0574	1	10948	10948		23.042	2.0956	1	9247200			23788	11129	16339	16376	27619	27619					0.05207740194430244
HTPILIEQ	8	Unmodified	_HTPILIEQ_					0	0	0			REV__ENSG00000197594|ENST00000647893|ENPP1	REV__ENSG00000197594|ENST00000647893|ENPP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.72760009765625	2	475.768917	949.523281	-0.32081	-0.00015263	-0.36128	-0.00017189	-0.68209	-0.00032452	475.76893192623373	26.878	0.41997	26.635	26.45	26.869	-0.24217					11	9	2	0	0	0	0.027866	1	1415	1415		17.365	9.1337	1	93086	+		23789	28325	16340	16377	27620	27620					0.046500714145167876
HTPLHLLL	8	Unmodified	_HTPLHLLL_					0	0	0		ENST00000589852.5_1_19:16301825-16301957:+|nuORF	ENST00000589852.5_1_19:16301825-16301957:+|nuORF	ENST00000589852.5_1_19:16301825-16301957:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2877502441406	2	472.28982	942.565087	-0.48925	-0.00023107	-4.2582	-0.0020111	-4.7475	-0.0022422	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.0472	1	11685	11685		29.842	3.0454	1	45907000			23790	17316	16341	16378	27621	27621					0.09150671893723938
HTPLPGIIIG	10	Unmodified	_HTPLPGIIIG_					0	0	0		ENSG00000168306|ENST00000302819|ACOX2	ENSG00000168306|ENST00000302819|ACOX2	ENSG00000168306|ENST00000302819|ACOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.30621337890625	2	509.30821	1016.60187	-1.0243	-0.0005217	-3.2977	-0.0016796	-4.3221	-0.0022013	509.306410243242	91.78	1.6681	91.78	91.383	93.051	0					111	39	5	0	0	0	1.1166	1	11656	11656		30.504	3.8107	1	3058500			23791	7810	16342	16379	27622	27622					0.09422923719625942
HTPLPGIIIG	10	Unmodified	_HTPLPGIIIG_					0	0	0		ENSG00000168306|ENST00000302819|ACOX2	ENSG00000168306|ENST00000302819|ACOX2	ENSG00000168306|ENST00000302819|ACOX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.3061218261719	2	509.30821	1016.60187	-0.42572	-0.00021683	-3.8904	-0.0019814	-4.3162	-0.0021983	509.30608017634603	91.974	1.4257	91.851	91.414	92.84	-0.12241					104	33	5	0	0	0	1.0004	1	11274	11274		45.952	1.8352	1	3160300			23792	7810	16342	16379	27623	27623					0.09422923719625942
HTPPPALA	8	Unmodified	_HTPPPALA_					0	0	0			REV__ENST00000526551.5_1_11:124746819-124748211:+|nuORF	REV__ENST00000526551.5_1_11:124746819-124748211:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5513916015625	2	402.224146	802.433738	1.437	0.00057801	-2.3467	-0.00094389	-0.90964	-0.00036588	402.22174015422814	23.386	0.20473	23.195	23.079	23.284	-0.19117					6	4	2	0	0	0	0.027866	1	900	900		19.36	0	1	17652	+		23793	34449	16343	16380	27624	27624					0.02461861525796394
HTPRRPVR	8	Unmodified	_HTPRRPVR_					0	0	0			REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.80389404296875	2	509.804491	1017.59443	0.28849	0.00014708	-1.9682	-0.0010034	-1.6797	-0.00085631	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.93274	1	10545	10545		47.916	11.469	1	3441300	+		23794	31430	16344	16381	27625	27625					0.08633628962559214
HTPSSGIHQD	10	Unmodified	_HTPSSGIHQD_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.767333984375	2	539.749244	1077.48394	-0.96915	-0.0005231	1.1763	0.0006349	0.20714	0.0001118	539.7505931993778	27.697	0.34365	27.684	27.536	27.88	-0.012983					12	8	2	0	0	0	0.03519	1	1520	1520		54.776	5.3348	1	96898			23795	2034	16345	16382	27626	27626					-0.051706806069887534
HTPTPPSA	8	Unmodified	_HTPTPPSA_					0	0	0		ENST00000315691.7_1_3:143690889-143691099:+|nuORF	ENST00000315691.7_1_3:143690889-143691099:+|nuORF	ENST00000315691.7_1_3:143690889-143691099:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.2330017089844	2	404.20341	806.392267	-0.18897	-7.6382E-05	3.8581	0.0015594	3.6691	0.0014831	404.2043768575716	84.432	0.32955	84.36	84.178	84.507	-0.072769					10	7	2	0	0	0	0.027866	1	10527	10527		40.573	0	1	45871			23796	12137	16346	16383	27627	27627					-0.018673192335313615
HTQARHLTL	9	Unmodified	_HTQARHLTL_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8018798828125	2	538.801614	1075.58868	2.5172	0.0013563	-2.6273	-0.0014156	-0.11011	-5.9327E-05	538.800106546275	18.292	0.99482	18.049	17.825	18.82	-0.24256					46	19	5	0	0	0	0.91321	1	275	275		31.53	1.2121	1	807700			23797	8707	16347	16384	27628	27628					0.05390485660223021
HTQGPNESVV	10	Unmodified	_HTQGPNESVV_					0	0	0			REV__ENSG00000005812|ENST00000355619|FBXL3	REV__ENSG00000005812|ENST00000355619|FBXL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.257568359375	2	534.259445	1066.50434	-0.99451	-0.00053133	0.041715	2.2287E-05	-0.9528	-0.00050904	534.2596013368509	66.497	1.0065	66.273	65.577	66.584	-0.22374					63	26	5	0	0	0	0.88896	1	7667	7667		54.776	0	1	6591700	+		23798	19814	16348	16385	27629	27629					-0.026255099471882204
HTQKNRQFF	9	Unmodified	_HTQKNRQFF_					0	0	0		ENST00000486840.1_1_7:6864046-6864211:-|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000496187.5_1_7:6863683-6865828:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENST00000486840.1_1_7:6864046-6864211:-|nuORF	ENST00000486840.1_1_7:6864046-6864211:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.54412841796875	3	402.54399	1204.61014	0.66782	0.00026883	0.46793	0.00018836	1.1357	0.00045719	402.54415519483695	25.082	1.3269	24.911	24.339	25.666	-0.17151					60	30	4	0	0	0	0.83071	1	1134	1134		44.377	14.826	1	680960			23799	14766	16349	16386	27630	27630					0.016018706889326495
HTQKNRQFF	9	Unmodified	_HTQKNRQFF_					0	0	0		ENST00000486840.1_1_7:6864046-6864211:-|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000496187.5_1_7:6863683-6865828:-|nuORF;ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENST00000486840.1_1_7:6864046-6864211:-|nuORF	ENST00000486840.1_1_7:6864046-6864211:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	402.54399	1204.61014	0.80504	0.00032406	0.65431	0.00026339	1.4594	0.00058745	402.544170379503	25.062	0.97452	24.888	24.643	25.617	-0.17472	-0.058176	-0.00015786	NaN	44.377	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722020			23800	14766	16349	16386							0.016018706889326495
HTQLTHRKL	9	Unmodified	_HTQLTHRKL_					0	0	0			REV__ENSG00000113916|ENST00000406870|BCL6	REV__ENSG00000113916|ENST00000406870|BCL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.330539	1132.64652	0.30028	0.00017036	-0.63922	-0.00036265	-0.33894	-0.00019229	567.3299930544371	88.156	1.3452	88.025	87.056	88.401	-0.13135					87	32	4	0	0	0	0.93097	1	10740	10740		30.318	1.1477	1	1707200	+		23801	22098	16350	16387	27631	27631					0.0855074758567298
HTQMHTHVF	9	Unmodified	_HTQMHTHVF_					0	0	0			REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF	REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2673950195312	2	569.26655	1136.51855	0.31757	0.00018078	1.4378	0.00081851	1.7554	0.00099929	569.2673127638058	23.413	2.6043	23.212	21.231	23.835	-0.20193					194	56	4	0	0	0	0.72875	1	850	850		44.117	7.67	1	2615500	+		23802	30350	16351	16388	27632	27632					-0.04425135999872509
HTQNHHLRPGT	11	Unmodified	_HTQNHHLRPGT_					0	0	0			REV__ENSG00000176020|ENST00000320431|AMIGO3	REV__ENSG00000176020|ENST00000320431|AMIGO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2554016113281	3	433.221798	1296.64356	0.66682	0.00028888	-2.7626	-0.0011968	-2.0958	-0.00090793	433.2201884275449	102.96	0.20105	102.79	102.64	102.84	-0.17034					5	4	2	0	0	0	0.02473	1	12784	12784		39.873	10.322	1	398860	+		23803	26989	16352	16389	27633	27633					0.0071087246080878685
HTQPGVQL	8	Unmodified	_HTQPGVQL_					0	0	0		nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.2480163574219	2	440.237784	878.461016	-0.26026	-0.00011458	0.24089	0.00010605	-0.019374	-8.5293E-06	440.23770015257924	33.656	0.47813	33.656	33.454	33.932	0					21	12	2	0	0	0	0.027866	1	2438	2438		35.618	0	1	139930			23804	18243	16353	16390	27634	27634					0.016923450662034156
HTRERSYVCI	10	Unmodified	_HTRERSYVCI_					0	0	0		nc|ENSG00000121406|Q6P9A3-2|ZNF549;ENSG00000121406|ENST00000376233|ZNF549	nc|ENSG00000121406|Q6P9A3-2|ZNF549	nc|ENSG00000121406|Q6P9A3-2|ZNF549	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.82183837890625	3	421.880273	1262.61899	-0.3227	-0.00013614	3.8188	0.0016111	3.4961	0.0014749	422.21542053243513	29.172	0.21972	28.999	28.85	29.07	-0.17258					5	4	2	0	0	0	0.03519	1	1753	1753		19.263	0	1	57659			23805	3870	16354	16391	27635	27635					-0.001815237368873568
HTRHSRPFH	9	Unmodified	_HTRHSRPFH_					0	0	0		nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	588.3173217773438	2	587.80248	1173.59041	0.63732	0.00037462	-0.65497	-0.00038499	-0.017653	-1.0376E-05	587.8030178513642	28.287	0.5351	28.368	28.08	28.615	0.080811					15	12	2	0	0	0	0.024447	1	1618	1618		32.812	0	1	38461			23806	18114	16355	16392	27636	27636					0.010555394688481101
HTRKFCFDAI	10	Unmodified	_HTRKFCFDAI_					0	0	0		nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.255859375	3	413.209731	1236.60736	0.074663	3.0852E-05	-0.73007	-0.00030167	-0.6554	-0.00027082	413.2095550015272	20.516	0.68581	20.348	20.098	20.784	-0.16774					36	13	5	0	0	0	0.03519	1	602	602		10.104	0	1	314820			23807	8471	16356	16393	27637	27637					-0.0014772076019653468
HTRKFCFDAI	10	Unmodified	_HTRKFCFDAI_					0	0	0		nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	413.209731	1236.60736	0.16287	6.73E-05	0.46671	0.00019285	0.62958	0.00026015	413.2099358681381	20.205	0.53885	20.205	19.929	20.468	0	-0.14948	0.0010092	NaN	14.694	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22047			23808	8471	16356	16393							-0.0014772076019653468
HTRKFCFDAI	10	Unmodified	_HTRKFCFDAI_					0	0	0		nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	413.209731	1236.60736	0.025634	1.0592E-05	0.39702	0.00016405	0.42266	0.00017465	413.2097059955471	20.455	0.53208	20.35	20.129	20.661	-0.10477	-0.0036818	0.00092281	NaN	14.694	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23470			23809	8471	16356	16393							-0.0014772076019653468
HTRKFCFDAI	10	Unmodified	_HTRKFCFDAI_					0	0	0		nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	413.209731	1236.60736	1.5797	0.00065275	-1.0188	-0.00042097	0.56092	0.00023178	413.20912123018877	20.307	0.44417	20.376	20.119	20.563	0.068901	0.021858	-0.00083226	NaN	14.694	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34740			23810	8471	16356	16393							-0.0014772076019653468
HTRLFNKFRHH	11	Unmodified	_HTRLFNKFRHH_					0	0	0			REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7718811035156	3	498.272604	1491.79598	-0.38487	-0.00019177	-3.8189	-0.0019028	-4.2037	-0.0020946	498.27056288974296	31.362	0.23396	31.121	30.915	31.149	-0.24109					7	5	2	0	0	0	0.024873	1	2050	2050		6.001	0	1	83036	+		23811	20493	16357	16394	27638	27638					0.06975692928244825
HTRLGKLL	8	Unmodified	_HTRLGKLL_					0	0	0		ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.76904296875	2	469.300719	936.586885	-0.52396	-0.0002459	0.61307	0.00028771	0.089107	4.1818E-05	469.3008601942836	25.416	0.69716	25.382	25.201	25.898	-0.034397					28	16	2	0	0	0	0.027866	1	1174	1174		8.2313	0	1	128450			23812	8073	16358	16395	27639	27639					0.11605476642284884
HTRLGPGAKQL	11	Unmodified	_HTRLGPGAKQL_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3439331054688	2	589.343646	1176.67274	-1.3447	-0.00079247	-0.0816	-4.809E-05	-1.4263	-0.00084056	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0017	1	12041	12041		36.447	0.82846	1	13724000	+		23813	24221	16359	16396	27640	27640					0.09147016757151505
HTRLGPGAKQL	11	Unmodified	_HTRLGPGAKQL_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3434448242188	2	589.343646	1176.67274	-1.6034	-0.00094497	0.25779	0.00015193	-1.3456	-0.00079304	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0557	1	10961	10961		23.523	0	1	5827400	+		23814	24221	16359	16396	27641	27641					0.09147016757151505
HTRLGPGAKQL	11	Unmodified	_HTRLGPGAKQL_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3432006835938	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0344	1	11473	11473		29.17	0	1	15816000	+		23815	24221	16359	16396	27642	27642					0.09147016757151505
HTRLGPGAKQL	11	Unmodified	_HTRLGPGAKQL_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3431396484375	2	589.343646	1176.67274	-1.3212	-0.00077864	0.069689	4.1071E-05	-1.2515	-0.00073757	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0557	1	11152	11152		23.523	0	1	5175100	+		23816	24221	16359	16396	27643	27643					0.09147016757151505
HTRLGPGAKQL	11	Unmodified	_HTRLGPGAKQL_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.343646	1176.67274	-0.57069	-0.00033633	-0.8775	-0.00051715	-1.4482	-0.00085348	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0429	1	11606	11606		27.047	1.4733	1	17343000	+		23817	24221	16359	16396	27644	27644					0.09147016757151505
HTRLYLIAN	9	Unmodified	_HTRLYLIAN_					0	0	0			REV__ENST00000520094.1_1_8:125568609-125570205:-|nuORF	REV__ENST00000520094.1_1_8:125568609-125570205:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.8557739257812	2	550.81419	1099.61383	-0.94304	-0.00051944	1.7812	0.00098112	0.83817	0.00046168	550.814220154918	80.173	0.46097	80.194	79.897	80.358	0.021439					17	10	2	0	0	0	0.024511	1	9871	9871		32.812	13.709	1	108140	+		23818	34286	16360	16397	27645	27645					0.06800540462791105
HTRPIGLREV	10	Unmodified	_HTRPIGLREV_					0	0	0			REV__ENST00000452032.6_1_19:10418966-10420344:-|nuORF	REV__ENST00000452032.6_1_19:10418966-10420344:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3438720703125	2	589.343646	1176.67274	-1.6043	-0.00094547	0.20595	0.00012138	-1.3983	-0.0008241	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	0.94316	1	12094	12094		51.193	3.5354	1	12648000	+		23819	32728	16361	16398	27646	27646					0.09147016757128767
HTRPLLIVVM	10	Oxidation (M)	_HTRPLLIVVM(Oxidation (M))_		HTRPLLIVVM(1)		HTRPLLIVVM(51)	0	0	1			REV__ENST00000509943.1_1_17:48286340-48286481:+|nuORF	REV__ENST00000509943.1_1_17:48286340-48286481:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8562622070312	2	597.855001	1193.69545	-0.56215	-0.00033608	2.4249	0.0014498	1.8628	0.0011137	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	0.941	1	11410	11410		51.335	8.9393	1	5880700	+		23820	34094	16362	16399	27647	27647		927			0.10634899830392897
HTRQHITLD	9	Unmodified	_HTRQHITLD_					0	0	0			REV__ZNF33B|p.K537E|1|0.19|ENSG00000196693|chr10:42593341-42593341|T/C|missense_variant	REV__ZNF33B|p.K537E|1|0.19|ENSG00000196693|chr10:42593341-42593341|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8150634765625	2	560.796529	1119.5785	-0.53064	-0.00029758	2.3171	0.0012994	1.7864	0.0010018	560.7978310687846	81.71	0.77158	81.71	81.178	81.95	0					32	18	3	0	0	0	0.024209	1	10161	10161		47.657	6.8792	1	171520	+		23821	28216	16363	16400	27648	27648					0.023498779349893084
HTRQHITLD	9	Unmodified	_HTRQHITLD_					0	0	0			REV__ZNF33B|p.K537E|1|0.19|ENSG00000196693|chr10:42593341-42593341|T/C|missense_variant	REV__ZNF33B|p.K537E|1|0.19|ENSG00000196693|chr10:42593341-42593341|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8146362304688	2	560.796529	1119.5785	-0.68682	-0.00038517	2.8999	0.0016263	2.2131	0.0012411	560.7979848337199	81.712	0.77121	81.738	81.168	81.94	0.025711					32	18	3	0	0	0	0.024209	1	10106	10106		66.429	0	1	142490	+		23822	28216	16363	16400	27649	27649					0.023498779349893084
HTRQIPTL	8	Unmodified	_HTRQIPTL_					0	0	0			REV__ENSG00000075407|ENST00000685332|ZNF37A	REV__ENSG00000075407|ENST00000685332|ZNF37A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.8075866699219	2	483.279983	964.545414	-0.75176	-0.00036331	-0.80623	-0.00038964	-1.558	-0.00075295	483.2794192586636	64.615	0.41713	64.352	64.155	64.572	-0.2626					23	10	3	0	0	0	0.027866	1	7587	7587		23.042	0	1	339330	+		23823	20547	16364	16401	27650	27650					0.06172295882936396
HTRQRRQKK	9	Unmodified	_HTRQRRQKK_					0	0	0			REV__ENSG00000069011|ENST00000265340|PITX1	REV__ENSG00000069011|ENST00000265340|PITX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.24884033203125	3	413.2498	1236.72757	0.25678	0.00010611	0.36784	0.00015201	0.62462	0.00025812	413.249489342252	100.34	0.46447	100.17	100.07	100.54	-0.17088					19	13	2	0	0	0	0.99229	1	12441	12441		16.717	0.79673	1	253340	+		23824	20394	16365	16402	27651	27651					0.11867448348402831
HTRRHIVL	8	Unmodified	_HTRRHIVL_					0	0	0			REV__nc|ENSG00000103199|O60304-2|ZNF500	REV__nc|ENSG00000103199|O60304-2|ZNF500	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3136596679688	2	516.314692	1030.61483	-0.060536	-3.1256E-05	-2.3499	-0.0012133	-2.4104	-0.0012445	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	1.0133	1	12191	12191		35.201	6.0512	1	29455000	+		23825	21365	16366	16403	27652	27652					0.10074799622361752
HTRRKRKKEKT	11	Unmodified	_HTRRKRKKEKT_					0	0	0		ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;ENST00000497589.1_1_2:220493286-220496728:+|nuORF	ENSG00000114923|ENST00000358055|SLC4A3	ENSG00000114923|ENST00000358055|SLC4A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7430725097656	3	489.970814	1466.89061	-0.08096	-3.9668E-05	0.1627	7.9717E-05	0.081738	4.0049E-05	490.30562659282367	31.56	0.39598	31.375	31.208	31.604	-0.18503					11	9	2	0	0	0	0.02484	1	2123	2123		2.688	0	1	86755			23826	3395	16367	16404	27653	27653					0.17584206679589443
HTRVDLGPGVD	11	Unmodified	_HTRVDLGPGVD_					0	0	0			REV__ENST00000526878.5_1_11:459265-459352:+|nuORF	REV__ENST00000526878.5_1_11:459265-459352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.2930908203125	2	583.301644	1164.58874	-0.20429	-0.00011916	2.9266	0.0017071	2.7223	0.0015879	583.3031640030823	63.752	0.98812	63.493	63.162	64.15	-0.25824					50	25	3	0	0	0	0.024723	1	7260	7260		26.063	6.7034	1	1824200	+		23827	34460	16368	16405	27654	27654					0.013024408695855527
HTSAALFT	8	Unmodified	_HTSAALFT_					0	0	0			REV__nc|ENSG00000174579|Q9HCI7-2|MSL2	REV__nc|ENSG00000174579|Q9HCI7-2|MSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2187194824219	2	424.21906	846.423567	-0.22547	-9.5648E-05	-1.0525	-0.00044649	-1.278	-0.00054214	424.2185251046166	98.415	2.1934	98.415	97.594	99.787	0					127	50	5	0	0	0	0.97924	1	12543	12543		40.573	4.1259	1	7415800	+		23828	26878	16369	16406	27655	27655					-0.005787461994145815
HTSDRGVL	8	Unmodified	_HTSDRGVL_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.7348937988281	2	442.732866	883.451179	2.0725	0.00091755	2.5922	0.0011477	4.6647	0.0020652	442.7338704574741	23.459	1.7702	23.268	22.942	24.713	-0.19117					121	40	6	0	0	0	0.88442	1	949	949		52.299	9.8247	1	7639300	+		23829	24663	16370	16407	27656	27656					0.0047915706081766984
HTSITLPPS	9	Unmodified	_HTSITLPPS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7581787109375	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.72875	1	13156	13156		44.117	1.6423	1	4565500	+		23830	27387	16371	16408	27657	27657					0.024854810348642786
HTSITLPPS	9	Unmodified	_HTSITLPPS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7573547363281	2	476.758549	951.502546	0.38446	0.00018329	-1.6457	-0.00078461	-1.2613	-0.00060132	476.75766316682655	103.71	1.8057	103.54	102.91	104.72	-0.16791					135	46	4	0	0	0	0.83071	1	12860	12860		37.159	1.5408	1	2252400	+		23831	27387	16371	16408	27658	27658					0.024854810348642786
HTSKANTAM	9	Unmodified	_HTSKANTAM_					0	0	0		ENSG00000175518|ENST00000380184|UBQLNL;nc|ENSG00000175518|Q8IYU4-2|UBQLNL	ENSG00000175518|ENST00000380184|UBQLNL	ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7313537597656	2	480.732009	959.449465	-0.13761	-6.6153E-05	0.29811	0.00014331	0.1605	7.7158E-05	480.7321315524798	31.624	6.3562	31.624	29.773	36.129	0					309	163	4	0	0	0	0.72494	2	2125	2085;2125		44.377	0.85399	1	7088900			23832	8567	16372	16409	27659;27660	27660					-0.03188220019444543
HTSLERPVV	9	Unmodified	_HTSLERPVV_					0	0	0			REV__ENSG00000103932|ENST00000304330|RPAP1	REV__ENSG00000103932|ENST00000304330|RPAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.28662109375	2	519.290548	1036.56654	-0.83518	-0.0004337	1.2022	0.00062431	0.36706	0.00019061	519.2909239498114	36.316	0.78568	36.354	36.098	36.884	0.038044					37	21	3	0	0	0	0.024541	1	2779	2779		17.365	0	1	1469400	+		23833	21407	16373	16410	27661	27661					0.04972261191801408
HTSLHRYI	8	Unmodified	_HTSLHRYI_					0	0	0		ENST00000592404.5_1_19:28288763-28290260:+|nuORF	ENST00000592404.5_1_19:28288763-28290260:+|nuORF	ENST00000592404.5_1_19:28288763-28290260:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.7761840820312	2	513.777608	1025.54066	-0.038555	-1.9809E-05	-2.0685	-0.0010627	-2.1071	-0.0010826	513.7764575902085	102.69	0.43951	102.56	102.28	102.72	-0.12666					21	9	3	0	0	0	0.78609	1	12759	12759		60.294	10.269	1	394510			23834	17369	16374	16411	27662	27662					0.028914117401882322
HTSLQDVKRLL	11	Unmodified	_HTSLQDVKRLL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.2570495605469	3	437.257738	1308.75138	0.14146	6.1854E-05	-0.92656	-0.00040514	-0.7851	-0.00034329	437.25730148495717	97.255	3.51	97.255	96.194	99.704	0					235	80	4	0	0	0	0.98082	6	12393	12393;12406;12418;12453;12490;12503		41.08	14.33	1	1246800	+		23835	27391	16375	16412	27663;27664;27665;27666;27667;27668	27663					0.10935824271564343
HTSLQDVKRLL	11	Unmodified	_HTSLQDVKRLL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2571716308594	3	437.257738	1308.75138	0.65097	0.00028464	-1.4641	-0.00064018	-0.81311	-0.00035554	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	0.98082	4	12461	12387;12424;12461;12492		41.08	8.8076	1	1147200	+		23836	27391	16375	16412	27669;27670;27671;27672	27671					0.10935824271564343
HTSLQDVKRLL	11	Unmodified	_HTSLQDVKRLL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2571105957031	3	437.257738	1308.75138	0.70758	0.0003094	-1.6013	-0.00070019	-0.89375	-0.0003908	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.0123	2	12031	12031;12043		34.087	7.3368	1	1350500	+		23837	27391	16375	16412	27673;27674	27673					0.10935824271564343
HTSLQDVKRLL	11	Unmodified	_HTSLQDVKRLL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2566833496094	3	437.257738	1308.75138	0.65841	0.0002879	-1.2001	-0.00052476	-0.54169	-0.00023686	437.2572333778059	95.546	2.1374	95.424	94.259	96.396	-0.12251					102	49	3	0	0	0	1.0215	1	11807	11807		32.034	13.068	1	349580	+		23838	27391	16375	16412	27675	27675					0.10935824271564343
HTSLQDVKRLL	11	Unmodified	_HTSLQDVKRLL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2569885253906	3	437.257738	1308.75138	1.0571	0.00046224	-1.8864	-0.00082483	-0.82923	-0.00036259	437.25688759784646	97.353	2.9903	97.23	96.187	99.177	-0.12368					226	70	5	0	0	0	0.94699	7	12114	12019;12040;12052;12114;12126;12137;12173		48.602	14.33	1	1091400	+		23839	27391	16375	16412	27676;27677;27678;27679;27680;27681;27682	27679					0.10935824271564343
HTSLQDVKRLL	11	Unmodified	_HTSLQDVKRLL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2565612792969	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	0.94699	4	12090	12090;12103;12127;12146		48.602	7.3368	1	1104700	+		23840	27391	16375	16412	27683;27684;27685;27686	27683					0.10935824271564343
HTSLTFRL	8	Unmodified	_HTSLTFRL_					0	0	0		ENSG00000196248|ENST00000641123|OR10S1;nc|ENSG00000196248|Q8NGN2|OR10S1	ENSG00000196248|ENST00000641123|OR10S1	ENSG00000196248|ENST00000641123|OR10S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.79046630859375	2	487.774534	973.534515	0.55665	0.00027152	-1.6801	-0.00081949	-1.1234	-0.00054797	487.77506019199365	83.885	0.30063	83.747	83.588	83.888	-0.13842					8	6	2	0	0	0	0.027866	1	10140	10140		23.042	0	1	31129			23841	9845	16376	16413	27687	27687					0.046688935086763195
HTSLVPARRP	10	Unmodified	_HTSLVPARRP_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.32958984375	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.1307	1	11054	11054		26.693	3.6504	1	18337000	+		23842	23365	16377	16414	27688	27688					0.08550747585650242
HTSNVERKEL	10	Unmodified	_HTSNVERKEL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.8182373046875	2	606.820201	1211.62585	-0.32075	-0.00019464	-2.4624	-0.0014942	-2.7831	-0.0016889	606.8186527529061	101.51	1.0527	101.38	101.17	102.23	-0.13156					51	24	4	0	0	0	1.0447	1	12587	12587		40.058	0.80534	1	568810	+		23843	25017	16378	16415	27689	27689					0.028501124153535784
HTSRGGLV	8	Unmodified	_HTSRGGLV_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ACAD10|p.R778Afs*3|1|0.07|ENSG00000111271|chr12:111747123-111747123|T/-|frameshift_variant	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.55938720703125	2	413.730126	825.4457	-0.66063	-0.00027332	2.6512	0.0010969	1.9906	0.00082355	413.73034891467563	26.818	0.65521	26.579	26.301	26.956	-0.23975					34	15	5	0	0	0	0.027866	1	1410	1410		18.324	6.1176	1	215270			23844	3100	16379	16416	27690	27690					0.025994782690077045
HTSRKGAL	8	Unmodified	_HTSRKGAL_					0	0	0			REV__ENST00000506579.5_1_5:140057288-140057606:-|nuORF	REV__ENST00000506579.5_1_5:140057288-140057606:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2515869140625	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	0.99042	1	9490	9490		38.806	1.647	1	2257900	+		23845	34033	16380	16417	27691	27691					0.04839453677391248
HTSTTSTRPN	10	Unmodified	_HTSTTSTRPN_					0	0	0			REV__ENST00000552030.5_1_12:109042755-109052582:-|nuORF	REV__ENST00000552030.5_1_12:109042755-109052582:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2820434570312	2	551.267801	1100.52105	-0.7114	-0.00039217	-2.8226	-0.001556	-3.534	-0.0019482	551.2662680378345	57.303	0.41464	57.399	57.088	57.503	0.09531					16	10	2	0	0	0	0.03519	1	6326	6326		9.7057	0	1	215570	+		23846	34944	16381	16418	27692	27692					-0.02519009061234101
HTTAKRSL	8	Unmodified	_HTTAKRSL_					0	0	0		ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2635498046875	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0284	1	10251	10251		32.812	4.9302	1	3048400			23847	11578	16382	16419	27693	27693					0.05435722848869773
HTTAKRSL	8	Unmodified	_HTTAKRSL_					0	0	0		ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2640380859375	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.95679	4	10272	10069;10187;10198;10272		44.117	8.8233	1	2903100			23848	11578	16382	16419	27694;27695;27696;27697	27697					0.05435722848869773
HTTAKRSL	8	Unmodified	_HTTAKRSL_					0	0	0		ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.26324462890625	2	457.264333	912.514114	0.3516	0.00016077	-0.33891	-0.00015497	0.012689	5.8023E-06	457.2640675136426	78.861	1.8585	78.607	77.998	79.857	-0.25471					112	43	5	0	0	0	1.0106	1	9454	9454		35.618	2.1027	1	1133100			23849	11578	16382	16419	27698	27698					0.05435722848869773
HTTAKRSL	8	Unmodified	_HTTAKRSL_					0	0	0		ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	ENST00000264956.10_2_4:5813382-5814396:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.26397705078125	2	457.264333	912.514114	0.383	0.00017513	-0.35618	-0.00016287	0.026819	1.2263E-05	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	1.0106	2	9957	9854;9957		35.618	2.1027	1	4505400			23850	11578	16382	16419	27699;27700	27700					0.05435722848869773
HTTAPSSLP	9	Unmodified	_HTTAPSSLP_					0	0	0			REV__ENST00000288699.10_1_2:27170870-27171059:+|nuORF	REV__ENST00000288699.10_1_2:27170870-27171059:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.7816162109375	2	455.735074	909.455596	-0.024192	-1.1025E-05	0.046422	2.1156E-05	0.02223	1.0131E-05	455.73493374231236	41.449	0.49225	41.314	41.137	41.629	-0.13553					16	12	2	0	0	0	0.024436	1	3662	3662		30.504	0	1	153590	+		23851	29928	16383	16420	27701	27701					-0.0027537851626675547
HTTDRKQR	8	Unmodified	_HTTDRKQR_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2823486328125	2	521.281046	1040.54754	0.032014	1.6688E-05	3.1744	0.0016547	3.2064	0.0016714	521.2826567919037	22.242	0.90419	22.04	21.517	22.421	-0.20199					54	18	5	0	0	0	0.91239	1	754	754		50.025	2.1089	1	845950	+		23852	33406	16384	16421	27702	27702					0.0288872462076597
HTTGIVMN	8	Unmodified	_HTTGIVMN_					0	0	0		ENST00000502306.1_1_5:15451209-15451341:+|nuORF	ENST00000502306.1_1_5:15451209-15451341:+|nuORF	ENST00000502306.1_1_5:15451209-15451341:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7749938964844	2	436.71837	871.422187	-0.44438	-0.00019407	2.7834	0.0012156	2.339	0.0010215	436.72038713963497	90.033	0.23714	90.033	89.936	90.173	0					9	5	2	0	0	0	0.027866	1	11373	11373		50.025	14.824	1	70928			23853	15664	16385	16422	27703	27703					-0.01866703559835514
HTTILSKFV	9	Unmodified	_HTTILSKFV_					0	0	0			REV__nc|ENSG00000073921|Q13492-4|PICALM	REV__nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3041381835938	2	523.305667	1044.59678	0.35068	0.00018351	-4.1015	-0.0021464	-3.7509	-0.0019629	523.3033589717056	90.251	1.1125	90.113	89.792	90.904	-0.13824					76	26	4	0	0	0	0.85329	1	11043	11043		35.618	0	1	1624800	+		23854	20515	16386	16423	27704	27704					0.0762661985700106
HTTLHRKLQ	9	Unmodified	_HTTLHRKLQ_					0	0	0			REV__ENSG00000178175|ENST00000318442|ZNF366	REV__ENSG00000178175|ENST00000318442|ZNF366	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3302001953125	2	567.330539	1132.64652	0.30028	0.00017036	-0.63922	-0.00036265	-0.33894	-0.00019229	567.3299930544371	88.156	1.3452	88.025	87.056	88.401	-0.13135					87	32	4	0	0	0	1.0101	1	10763	10763		18.324	0.062328	1	1707200	+		23855	27171	16387	16424	27705	27705					0.0855074758567298
HTTMNDDAR	9	Unmodified	_HTTMNDDAR_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2778930664062	2	530.727455	1059.44036	-0.66875	-0.00035492	-2.1896	-0.0011621	-2.8584	-0.001517	530.7261851247807	57.731	0.47288	57.553	57.281	57.754	-0.17775					27	11	3	0	0	0	0.024457	1	6340	6340		29.15	0	1	1002400			23856	11042	16388	16425	27706	27706					-0.08698613375804598
HTTQSAQW	8	Unmodified	_HTTQSAQW_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MSMS	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	479.722498	957.430444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.694	1	28.525	28.025	29.025	-0.16897								0	0	0	0.42131	1	1693	1693		64.207	5.4253	1				23857	6092	16389	16426	27707	27707					-0.049974333188629316
HTTRIKGT	8	Unmodified	_HTTRIKGT_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.26397705078125	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0516	1	10049	10049		29.15	1.2673	1	3048400	+		23858	21681	16390	16427	27708	27708					0.054357228488470355
HTTRMSVL	8	Oxidation (M)	_HTTRM(Oxidation (M))SVL_		HTTRM(1)SVL		HTTRM(85)SVL	0	0	1		ENSG00000279116|ENST00000624618|OR8D2	ENSG00000279116|ENST00000624618|OR8D2	ENSG00000279116|ENST00000624618|OR8D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7505187988281	2	480.750201	959.48585	-0.18537	-8.9117E-05	-0.13453	-6.4674E-05	-0.3199	-0.00015379	480.7500768326652	32.962	4.3501	32.962	31.257	35.608	0					298	113	4	0	0	0	0.50239	1	2382	2382		85.359	11.385	1	8486100			23859	11073	16391	16428	27709	27709		460			0.00448656877256326
HTTTLPALV	9	Unmodified	_HTTTLPALV_					0	0	0		nc|ENSG00000144331|Q569K4-2|ZNF385B;nc|ENSG00000144331|Q569K4-5|ZNF385B;nc|ENSG00000144331|Q569K4|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B	nc|ENSG00000144331|Q569K4-2|ZNF385B	nc|ENSG00000144331|Q569K4-2|ZNF385B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7620849609375	2	476.776742	951.538931	0.31508	0.00015022	2.7287	0.001301	3.0438	0.0014512	476.77809413221416	64.223	0.39995	63.971	63.73	64.13	-0.25141					13	10	2	0	0	0	0.024436	1	7519	7519		38.806	5.9937	1	187110			23860	5727	16392	16429	27710	27710					0.06122357931553779
HTTTTSSL	8	Unmodified	_HTTTTSSL_					0	0	0		ENSG00000101004|ENST00000278886|NINL;nc|ENSG00000101004|Q9Y2I6-2|NINL;NINL|p.H628Lfs*13|1|0.28|ENSG00000101004|chr20:25480195-25480195|T/-|frameshift_variant	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.73480224609375	2	424.211432	846.408311	0.23173	9.8304E-05	0.054876	2.3279E-05	0.28661	0.00012158	424.21132560086346	37.234	0.75531	37.266	36.996	37.751	0.032269					47	19	3	0	0	0	0.027866	1	3002	3002		31.955	6.5047	1	217610			23861	2275	16393	16430	27711	27711					-0.021036577872678208
HTVAYTTLL	9	Unmodified	_HTVAYTTLL_					0	0	0			REV__ENSG00000068354|ENST00000376771|TBC1D25	REV__ENSG00000068354|ENST00000376771|TBC1D25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.8035888671875	2	509.782025	1017.5495	-0.084136	-4.2891E-05	-1.3612	-0.00069393	-1.4454	-0.00073682	509.7823108645996	87.171	0.29314	87.033	86.87	87.163	-0.13734					10	6	3	0	0	0	0.024354	1	10570	10570		38.806	0	1	62067	+		23862	20375	16394	16431	27712	27712					0.04142340586008686
HTVFHLLGI	9	Unmodified	_HTVFHLLGI_					0	0	0		ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.74755859375	2	518.800552	1035.58655	2.7044	0.001403	4.4043	0.002285	7.1087	0.003688	518.8027297045669	18.068	0.4408	18.068	17.892	18.333	0					21	8	4	0	0	0	0.024541	1	271	271		25.45	8.0852	1	231940			23863	10634	16395	16432	27713	27713					0.07018056922424876
HTVFHLLGI	9	Unmodified	_HTVFHLLGI_					0	0	0		ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.800552	1035.58655	0.1289	6.6874E-05	7.1036	0.0036854	7.2325	0.0037523	518.8040764164176	18.227	0.83672	18.096	17.663	18.499	-0.13147	0.014075	0.0013125	NaN	18.324	30	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186060			23864	10634	16395	16432							0.07018056922424876
HTVFLKEKVPK	11	Unmodified	_HTVFLKEKVPK_					0	0	0		COBL|p.E140K|1|0.18|ENSG00000106078|chr7:51193417-51193417|C/T|missense_variant	COBL|p.E140K|1|0.18|ENSG00000106078|chr7:51193417-51193417|C/T|missense_variant	COBL|p.E140K|1|0.18|ENSG00000106078|chr7:51193417-51193417|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.6009216308594	3	442.602845	1324.78671	0.13106	5.8006E-05	-4.4046	-0.0019495	-4.2735	-0.0018915	442.6009585536604	102.32	0.56578	102.33	102.02	102.59	0.0073471					40	12	6	0	0	0	1.0674	1	13076	13076		20.315	0.68808	1	563770			23865	465	16396	16433	27714	27714					0.13730486799363462
HTVHAPLLAF	10	Unmodified	_HTVHAPLLAF_					0	0	0		ENST00000313349.3_1_2:64862928-64863006:-|nuORF	ENST00000313349.3_1_2:64862928-64863006:-|nuORF	ENST00000313349.3_1_2:64862928-64863006:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.7828369140625	2	553.311284	1104.60801	-0.21374	-0.00011827	-2.6505	-0.0014665	-2.8642	-0.0015848	553.3096935684391	41.572	0.59266	41.437	41.215	41.807	-0.13554					22	15	2	0	0	0	0.03519	1	3650	3650		29.15	4.9468	1	267040			23866	12098	16397	16434	27715	27715					0.05989441951146546
HTVIKRDLGLN	11	Unmodified	_HTVIKRDLGLN_					0	0	0			REV__LRP11|p.M353I|1|0.31|ENSG00000120256|chr6:149836278-149836278|C/T|missense_variant	REV__LRP11|p.M353I|1|0.31|ENSG00000120256|chr6:149836278-149836278|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3692016601562	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	1.013	1	11900	11900		33.922	3.6039	1	3181800	+		23867	36326	16398	16435	27716	27716					0.10339555100085818
HTVKKLFE	8	Unmodified	_HTVKKLFE_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.29071044921875	2	501.292559	1000.57057	-0.38963	-0.00019532	-4.2687	-0.0021399	-4.6584	-0.0023352	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	1.0338	1	10701	10701		31.955	0.42505	1	8504000			23868	4274	16399	16436	27717	27717					0.07030350685522535
HTVLNPSP	8	Unmodified	_HTVLNPSP_					0	0	0			REV__ENSG00000180787|ENST00000318833|ZFP3	REV__ENSG00000180787|ENST00000318833|ZFP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.73193359375	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	0.96769	1	12600	12600		42.396	1.8235	1	3615900	+		23869	27365	16400	16437	27718	27718					0.012929426919072284
HTVLRLNL	8	Unmodified	_HTVLRLNL_					0	0	0			REV__ENST00000504225.1_1_5:180278346-180278472:-|nuORF	REV__ENST00000504225.1_1_5:180278346-180278472:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2195739746094	2	483.298176	964.581799	-0.1083	-5.2343E-05	-0.34099	-0.0001648	-0.4493	-0.00021714	483.2978416489372	32.141	0.46665	31.983	31.778	32.245	-0.15772					18	10	2	0	0	0	0.027866	1	2197	2197		17.365	0	1	144480	+		23870	33977	16401	16438	27719	27719					0.09809172779637265
HTVLVVEL	8	Unmodified	_HTVLVVEL_					0	0	0			REV__CTRB2|p.L217Rfs*?|1|0.27|ENSG00000168928|chr16:75204303-75204303|A/-|frameshift_variant	REV__CTRB2|p.L217Rfs*?|1|0.27|ENSG00000168928|chr16:75204303-75204303|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7444763183594	2	455.273835	908.533118	0.38508	0.00017532	-1.0132	-0.0004613	-0.62815	-0.00028598	455.27354809673324	97.5	0.66891	97.5	97.102	97.771	0					30	14	3	0	0	0	0.027866	1	12474	12474		19.36	13.439	1	151940	+		23871	19626	16402	16439	27720	27720					0.07519259419893842
HTVPGTGLAPD	11	Unmodified	_HTVPGTGLAPD_					0	0	0		ENST00000425923.1_1_5:131657926-131660304:+|nuORF	ENST00000425923.1_1_5:131657926-131660304:+|nuORF	ENST00000425923.1_1_5:131657926-131660304:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8165893554688	2	532.772188	1063.52982	0.11589	6.1742E-05	-1.6364	-0.00087183	-1.5205	-0.00081009	532.7714759103717	85.671	0.41959	85.476	85.301	85.721	-0.19508					12	9	2	0	0	0	0.024741	1	10360	10360		30.318	6.115	1	77160			23872	14075	16403	16440	27721	27721					0.0005996457523451681
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.8706665039062	2	633.369861	1264.72517	0.31837	0.00020164	-1.5571	-0.00098625	-1.2388	-0.0007846	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	0.94988	1	12078	12078		47.96	3.5823	1	3419700			23873	6105	16404	16441	27722	27722					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.8704223632812	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	1.0017	1	12001	12001		36.447	1.2947	1	3181800			23874	6105	16404	16441	27723	27723					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3675537109375	2	633.369861	1264.72517	0.56003	0.00035471	-1.6879	-0.0010691	-1.1279	-0.00071437	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.9728	2	12031	12031;12355		42.864	1.4377	1	8480900			23875	6105	16404	16441	27724;27725	27724					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.36962890625	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.97926	2	11941	11941;12056		41.427	0	1	9245900			23876	6105	16404	16441	27726;27727	27726					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3685302734375	2	633.369861	1264.72517	-0.022916	-1.4514E-05	-0.79172	-0.00050145	-0.81464	-0.00051597	633.3695106025074	97.84	1.3368	97.703	97.56	98.896	-0.1367					43	31	2	0	0	0	1.0281	2	12218	12208;12218		30.569	6.795	1	615980			23877	6105	16404	16441	27728;27729	27729					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.371826171875	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.76305	2	11896	11896;11979		59.931	6.129	1	9528000			23878	6105	16404	16441	27730;27731	27730					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3705444335938	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0017	1	11905	11905		36.447	4.8125	1	9845500			23879	6105	16404	16441	27732	27732					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3692626953125	2	633.369861	1264.72517	-0.29408	-0.00018626	-0.90421	-0.0005727	-1.1983	-0.00075896	633.3692359640979	98.702	1.5361	98.534	98.071	99.607	-0.16862					74	35	3	0	0	0	0.94988	2	12240	12228;12240		47.96	0	1	281430			23880	6105	16404	16441	27733;27734	27734					0.10339555100085818
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	633.369861	1264.72517	0.42295	0.00026789	-1.5515	-0.00098264	-1.1285	-0.00071476	633.3688006531468	98.459	0.85528	98.459	98.19	99.045	0	-0.03373	-0.00023347	NaN	47.96	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260070			23881	6105	16404	16441							0.10339555100085818
HTVRARLRLLY	11	Unmodified	_HTVRARLRLLY_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6213073730469	3	466.621122	1396.84154	0.15231	7.1069E-05	0.61618	0.00028752	0.76848	0.00035859	466.62143840072247	46.584	0.71166	46.487	46.259	46.971	-0.096649					84	19	6	0	0	0	1.0788	1	4528	4528		17.167	7.0628	1	42650000			23882	2521	16405	16442	27735	27735					0.1589891839066695
HTVRKKEPR	9	Unmodified	_HTVRKKEPR_					0	0	0			REV__ENSG00000125352|ENST00000371442|RNF113A	REV__ENSG00000125352|ENST00000371442|RNF113A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.843017578125	2	575.843813	1149.67307	-2.0743	-0.0011945	0.6137	0.00035339	-1.4606	-0.00084106	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	0.96906	1	11565	11565		26.693	2.1737	1	5238400	+		23883	22810	16406	16443	27736	27736					0.10422436476983421
HTVRSQEW	8	Unmodified	_HTVRSQEW_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7568969726562	2	521.756872	1041.49919	-0.89927	-0.0004692	0.85636	0.00044681	-0.042905	-2.2386E-05	521.7572134675862	26.029	0.57964	25.793	25.55	26.13	-0.23603					32	15	3	0	0	0	0.71063	1	1298	1298		66.429	22.312	1	1016500			23884	6267	16407	16444	27737	27737					-0.01989769019155574
HTVRSQEW	8	Unmodified	_HTVRSQEW_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7566528320312	2	521.756872	1041.49919	-0.010834	-5.6525E-06	0.37402	0.00019515	0.36319	0.0001895	521.7568074201635	25.834	0.80261	25.663	25.457	26.259	-0.17078					46	22	5	0	0	0	0.34573	2	1267	1267;1279		104.75	22.442	1	1125400			23885	6267	16407	16444	27738;27739	27738					-0.01989769019155574
HTVRSQEW	8	Unmodified	_HTVRSQEW_					0	0	0		nc|ENSG00000152332|Q8TAS1-2|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7568359375	2	521.756872	1041.49919	-0.88944	-0.00046407	0.65111	0.00033972	-0.23833	-0.00012435	521.7571257260016	25.884	0.78477	25.721	25.414	26.199	-0.16331					35	21	3	0	0	0	0.41021	1	1248	1248		95.815	21.84	1	1054300			23886	6267	16407	16444	27740	27740					-0.01989769019155574
HTVSMDTLPPY	11	Unmodified	_HTVSMDTLPPY_					0	0	0		nc|ENSG00000166546|Q3B7T3-2|BEAN1;ENSG00000166546|ENST00000536005|BEAN1	nc|ENSG00000166546|Q3B7T3-2|BEAN1	nc|ENSG00000166546|Q3B7T3-2|BEAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.5206298828125	3	420.869151	1259.58562	0.21558	9.073E-05	-2.77	-0.0011658	-2.5544	-0.0010751	420.86667683817285	31.975	0.5635	31.784	31.556	32.119	-0.19075					17	12	2	0	0	0	0.024731	1	2153	2153		18.531	0	1	63148			23887	7580	16408	16445	27741	27741					-0.03378570299446437
HTVTGPPLGAD	11	Unmodified	_HTVTGPPLGAD_					0	0	0			REV__ENSG00000133019|ENST00000676153|CHRM3	REV__ENSG00000133019|ENST00000676153|CHRM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.8165283203125	2	532.772188	1063.52982	0.14703	7.8332E-05	-1.265	-0.00067396	-1.118	-0.00059562	532.7716955596892	85.644	0.50487	85.506	85.284	85.789	-0.13753					19	11	2	0	0	0	0.02478	1	10390	10390		56.434	32.911	1	100990	+		23888	23336	16409	16446	27742	27742					0.0005996457523451681
HTVTPQTTP	9	Unmodified	_HTVTPQTTP_					0	0	0		ENSG00000164168|ENST00000296582|TMEM184C	ENSG00000164168|ENST00000296582|TMEM184C	ENSG00000164168|ENST00000296582|TMEM184C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.33648681640625	2	491.253631	980.49271	-0.15379	-7.5548E-05	-0.81967	-0.00040267	-0.97346	-0.00047821	491.25527916215077	82.769	0.38618	82.769	82.579	82.965	0					17	8	3	0	0	0	0.024418	1	10323	10323		30.318	13.845	1	66128			23889	7230	16410	16447	27743	27743					0.0016829302946916869
HTVTSTFHV	9	Unmodified	_HTVTSTFHV_					0	0	0			REV__OR7D2|p.A263T|1|0.33|ENSG00000188000|chr19:9186568-9186568|G/A|missense_variant	REV__OR7D2|p.A263T|1|0.33|ENSG00000188000|chr19:9186568-9186568|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.314453125	2	514.761623	1027.50869	0.23738	0.00012219	-2.4503	-0.0012613	-2.2129	-0.0011391	514.7599796861681	18.078	0.34334	17.947	17.811	18.154	-0.13147					12	6	3	0	0	0	0.024457	1	224	224		45.952	25.005	1	22704	+		23890	37330	16411	16448	27744	27744					-0.003960007336218041
HTVVPLDDAT	10	Unmodified	_HTVVPLDDAT_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2632446289062	2	534.272021	1066.52949	-0.090981	-4.8609E-05	4.123	0.0022028	4.032	0.0021542	534.2740423659664	92.017	0.89106	92.027	91.572	92.463	0.0094147					32	21	2	0	0	0	0.03519	1	11587	11587		26.693	0	1	113990			23891	10358	16412	16449	27745	27745					-0.0011145514461077255
HTWVFLVAHS	10	Unmodified	_HTWVFLVAHS_					0	0	0		ENST00000412676.5_1_12:108686098-108686329:-|nuORF	ENST00000412676.5_1_12:108686098-108686329:-|nuORF	ENST00000412676.5_1_12:108686098-108686329:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8565673828125	2	598.81419	1195.61383	-1.776	-0.0010635	-0.047032	-2.8164E-05	-1.823	-0.0010917	598.8145026736111	91.556	0.3866	91.407	91.225	91.612	-0.1487					16	8	3	0	0	0	0.03519	1	11200	11200		19.997	0	1	74023			23892	13824	16413	16450	27746	27746					0.023845404628218603
HTYDNVTR	8	Unmodified	_HTYDNVTR_					0	0	0			REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF	REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.8109130859375	2	503.241055	1004.46756	0.51119	0.00025725	-1.2796	-0.00064396	-0.76845	-0.00038671	503.2404480051204	69.781	0.56126	69.488	69.275	69.836	-0.29291					18	13	2	0	0	0	0.027866	1	8383	8383		38.806	6.8513	1	206430	+		23893	24866	16414	16451	27747	27747					-0.03449761773094906
HTYGKLLLG	9	Unmodified	_HTYGKLLLG_					0	0	0			REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29052734375	2	501.292559	1000.57057	-0.32298	-0.00016191	-3.2597	-0.0016341	-3.5827	-0.001796	501.2905862857756	88.352	1.9534	88.181	87.855	89.808	-0.17053					95	46	4	0	0	0	0.72875	1	10756	10756		44.117	1.7207	1	1265500	+		23894	32049	16415	16452	27748	27748					0.07030350685533904
HTYGKLLLG	9	Unmodified	_HTYGKLLLG_					0	0	0			REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29034423828125	2	501.292559	1000.57057	-0.20958	-0.00010506	-3.7508	-0.0018802	-3.9604	-0.0019853	501.2904390152303	88.357	2.0156	88.219	87.862	89.877	-0.13744					89	47	3	0	0	0	0.59099	2	10754	10754;10765		53.351	10.955	1	1494100	+		23895	32049	16415	16452	27749;27750	27749					0.07030350685533904
HTYIDLLT	8	Unmodified	_HTYIDLLT_					0	0	0			REV__nc|ENSG00000070814|Q13428-2|TCOF1	REV__nc|ENSG00000070814|Q13428-2|TCOF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7790222167969	2	488.260925	974.507297	-0.092291	-4.5062E-05	3.5967	0.0017561	3.5044	0.0017111	488.2627574505797	24.805	0.98768	24.63	23.963	24.95	-0.17484					35	22	3	0	0	0	0.027866	1	1085	1085		25.45	1.9275	1	55162	+		23896	20438	16416	16453	27751	27751					0.01902365177613774
HTYTQYTQQN	10	Unmodified	_HTYTQYTQQN_					0	0	0			REV__ENSG00000244476|ENST00000472091|ERVFRD-1	REV__ENSG00000244476|ENST00000472091|ERVFRD-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2622375488281	3	428.526553	1282.55783	0.60581	0.00025961	-1.8441	-0.00079024	-1.2383	-0.00053063	428.5270227669473	90.195	0.23886	90.057	89.958	90.196	-0.13824					6	5	2	0	0	0	0.03519	1	11028	11028		28.081	10.613	1	44298	+		23897	28999	16417	16454	27752	27752					-0.07214757235306024
HVALWDECL	9	Unmodified	_HVALWDECL_					0	0	0			REV__ENSG00000173261|ENST00000311450|PLAC8L1	REV__ENSG00000173261|ENST00000311450|PLAC8L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.2554931640625	2	543.257859	1084.50117	-1.186	-0.00064428	-2.893	-0.0015716	-4.0789	-0.0022159	543.2561891124572	30.137	1.1138	30.145	29.797	30.911	0.0086708					64	26	4	0	0	0	0.64155	1	1918	1918		50.025	2.3672	1	2079200	+		23898	26759	16418	16455	27753	27753					-0.037704763255760554
HVAPILRVAM	10	Unmodified	_HVAPILRVAM_					0	0	0			REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.82958984375	2	553.828786	1105.64302	0.31465	0.00017426	1.8541	0.0010268	2.1687	0.0012011	553.8296747582538	87.083	2.4623	87.083	85.708	88.17	0					172	58	4	0	0	0	1.1056	1	10961	10961		31.955	1.6371	1	1317800	+		23899	28688	16419	16456	27754	27754					0.09442361487435846
HVAPILRVAM	10	Unmodified	_HVAPILRVAM_					0	0	0			REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8301391601562	2	553.828786	1105.64302	-0.79306	-0.00043922	2.9265	0.0016208	2.1334	0.0011816	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.1166	1	10946	10946		30.504	2.4222	1	6583300	+		23900	28688	16419	16456	27755	27755					0.09442361487435846
HVAPILRVAM	10	Unmodified	_HVAPILRVAM_					0	0	0			REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8305053710938	2	553.828786	1105.64302	-0.33257	-0.00018418	2.3882	0.0013226	2.0556	0.0011384	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.0541	1	10929	10929		38.806	3.1879	1	6921700	+		23901	28688	16419	16456	27756	27756					0.09442361487435846
HVAQKAQHPTG	11	Unmodified	_HVAQKAQHPTG_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.79150390625	2	587.309803	1172.60505	-0.22461	-0.00013191	-3.0315	-0.0017804	-3.2561	-0.0019124	587.8094815150105	37.311	0.30697	37.118	37.002	37.309	-0.193					12	7	2	0	0	0	0.024732	1	2998	2998		32.812	11.865	1	118150	+		23902	22614	16420	16457	27757	27757					0.025655668263198095
HVASFWLS	8	Unmodified	_HVASFWLS_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7783203125	2	473.742702	945.470852	0.33145	0.00015702	3.5042	0.0016601	3.8356	0.0018171	473.74433830538203	23.225	0.21169	23.225	23.033	23.245	0					5	4	2	0	0	0	0.027866	1	894	894		19.36	0	1	26567			23903	7759	16421	16458	27758	27758					-0.004064669284275624
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2846984863281	2	482.284734	962.554916	-0.35687	-0.00017212	-0.066731	-3.2184E-05	-0.42361	-0.0002043	482.284692551653	54.575	1.5368	54.575	54.249	55.786	0					78	43	2	0	0	0	0.65054	4	6001	5954;5977;5989;6001		71.296	15.791	1	24056000			23904	4473	16422	16459	27759;27760;27761;27762	27762					0.07214064168465484
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2845764160156	2	482.284734	962.554916	-0.018229	-8.7918E-06	-0.20328	-9.8037E-05	-0.22151	-0.00010683	482.2846318201508	54.675	1.8092	54.525	54.191	56	-0.15036					91	50	2	0	0	0	0.65054	6	5978	5943;5953;5966;5978;5991;6004		71.296	17.944	1	23543000			23905	4473	16422	16459	27763;27764;27765;27766;27767;27768	27766					0.07214064168465484
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2853088378906	2	482.284734	962.554916	0.45539	0.00021963	-0.73141	-0.00035275	-0.27602	-0.00013312	482.2843740070333	54.345	1.4847	54.443	54.114	55.598	0.098015					81	41	2	0	0	0	0.62679	3	5860	5860;5872;5897		73.975	15.193	1	27421000			23906	4473	16422	16459	27769;27770;27771	27769					0.07214064168465484
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.28497314453125	2	482.284734	962.554916	-0.03329	-1.6055E-05	-0.57281	-0.00027626	-0.6061	-0.00029231	482.28450797205414	54.573	1.9946	54.427	54.109	56.104	-0.14609					113	54	5	0	0	0	0.65054	5	5786	5786;5795;5806;5818;5832		71.296	12.514	1	22609000			23907	4473	16422	16459	27772;27773;27774;27775;27776	27772					0.07214064168465484
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2848205566406	2	482.284734	962.554916	-0.12077	-5.8243E-05	-0.60003	-0.00028938	-0.72079	-0.00034763	482.28451687068633	54.696	1.6493	54.465	54.181	55.83	-0.23087					115	46	5	0	0	0	0.55296	1	5823	5823		82.305	10.927	1	22178000			23908	4473	16422	16459	27777	27777					0.07214064168465484
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.2850036621094	2	482.284734	962.554916	1.0582	0.00051037	-1.7424	-0.00084035	-0.68419	-0.00032997	482.2839715054123	54.672	1.7378	54.466	54.087	55.825	-0.20613					114	47	4	0	0	0	0.75995	3	5805	5805;5817;5832		63.306	3.0123	1	19378000			23909	4473	16422	16459	27778;27779;27780	27778					0.07214064168465484
HVAYMNTLR	9	Unmodified	_HVAYMNTLR_					0	0	0		ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.7828979492188	2	552.784576	1103.5546	-0.4896	-0.00027064	-3.0512	-0.0016866	-3.5408	-0.0019573	552.7829241490338	41.564	0.72045	41.333	41.041	41.761	-0.23029					41	18	3	0	0	0	0.87448	1	3673	3673		34.173	2.2177	1	2056800			23910	5310	16423	16460	27781	27781					0.00696321176951642
HVAYVLIKF	9	Unmodified	_HVAYVLIKF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.281982421875	2	545.326402	1088.63825	0.24307	0.00013255	3.6513	0.0019911	3.8944	0.0021237	545.32905993161	50.878	0.25837	50.767	50.638	50.896	-0.11163					14	6	3	0	0	0	0.024541	1	5218	5218		14.664	1.2101	1	1143000			23911	4441	16424	16461	27782	27782					0.09747800616310087
HVCLRIKPP	9	Unmodified	_HVCLRIKPP_					0	0	0			REV__ENSG00000129933|ENST00000262815|MAU2	REV__ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8223876953125	2	531.815679	1061.6168	5.3714	0.0028566	4.0472	0.0021523	9.4185	0.0050089	531.8176283793784	16.878	0.49167	16.624	16.48	16.971	-0.25378					31	13	3	0	0	0	0.67308	1	83	83		47.916	7.1374	1	381360	+		23912	23067	16425	16462	27783	27783					0.08846092315934584
HVCMIQGTQS	10	Unmodified	_HVCMIQGTQS_					0	0	0		ENST00000557447.5_1_14:63671394-63671487:+|nuORF	ENST00000557447.5_1_14:63671394-63671487:+|nuORF	ENST00000557447.5_1_14:63671394-63671487:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.2545776367188	2	552.252251	1102.48995	-0.24505	-0.00013533	3.2804	0.0018116	3.0353	0.0016763	552.2539724661558	110.65	0.47475	110.64	110.58	111.06	-0.011299					25	17	2	0	0	0	1.1179	1	13979	13979		19.997	0.6368	1	49158			23913	16732	16426	16463	27784	27784					-0.0571962169130984
HVDEHPWYD	9	Unmodified	_HVDEHPWYD_					0	0	0			REV__USP34|p.R1888H|1|0.2|ENSG00000115464|chr2:61265512-61265512|C/T|missense_variant	REV__USP34|p.R1888H|1|0.2|ENSG00000115464|chr2:61265512-61265512|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	598.26025390625	2	599.25162	1196.48869	-0.87195	-0.00052251	4.1562	0.0024906	3.2843	0.0019681	599.2524829100199	64.895	0.35868	64.661	64.49	64.849	-0.2345					14	8	3	0	0	0	0.024487	1	7385	7385		40.573	14.999	1	122120	+		23914	37769	16427	16464	27785	27785					-0.10169796464242609
HVDKAEGTTY	10	Unmodified	_HVDKAEGTTY_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.7665405273438	2	560.767103	1119.51965	0.23316	0.00013075	-0.49477	-0.00027745	-0.26161	-0.00014671	560.7667316500218	22.678	0.69481	22.489	22.191	22.886	-0.18894					31	14	3	0	0	0	0.45418	1	834	834		93.143	27.34	1	468820			23915	1288	16428	16465	27786	27786					-0.03532643149992509
HVDKAEGTTY	10	Unmodified	_HVDKAEGTTY_					0	0	0		nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7669677734375	2	560.767103	1119.51965	-0.50132	-0.00028112	0.37704	0.00021143	-0.12428	-6.9692E-05	560.7671558565281	22.811	0.82633	22.626	22.369	23.196	-0.18539					44	17	4	0	0	0	0.40114	1	841	841		98.582	40.771	1	475250			23916	1288	16428	16465	27787	27787					-0.03532643149992509
HVDLIRLL	8	Unmodified	_HVDLIRLL_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;ENST00000552221.1_1_12:108941677-108954930:-|nuORF;nc|ENSG00000075856|Q15020-2|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2651672363281	2	489.808377	977.6022	-1.2751	-0.00062456	0.17767	8.7023E-05	-1.0974	-0.00053754	489.80838152837254	55.496	0.28386	55.34	55.178	55.462	-0.15656					12	7	3	0	0	0	0.027866	1	5980	5980		38.806	0	1	109050			23917	1572	16429	16466	27788	27788					0.11250343439473909
HVDPIPKT	8	Unmodified	_HVDPIPKT_					0	0	0			REV__nc|ENSG00000100170|P13866-2|SLC5A1;REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__nc|ENSG00000100170|P13866-2|SLC5A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.73980712890625	2	453.75581	905.497067	0.080456	3.6507E-05	2.4961	0.0011326	2.5765	0.0011691	453.75692350123	75.142	0.39309	74.898	74.798	75.191	-0.24455					13	9	2	0	0	0	0.027866	1	9162	9162		18.324	0	1	118850	+		23918	21060;21061	16430	16467	27789	27789					0.04053802243049631
HVEGAPGPVL	10	Unmodified	_HVEGAPGPVL_					0	0	0			REV__ENST00000379441.7_1_12:56993606-56993829:-|nuORF	REV__ENST00000379441.7_1_12:56993606-56993829:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2686767578125	2	488.266542	974.51853	-0.8418	-0.00041102	4.3141	0.0021064	3.4723	0.0016954	488.2687571734604	43.469	1.4289	43.469	42.786	44.215	0					105	39	4	0	0	0	0.87795	1	4106	4106		55.504	6.0627	1	11738000	+		23919	31432	16431	16468	27790	27790					0.030251872717599326
HVEMLFRCNY	10	Unmodified	_HVEMLFRCNY_					0	0	0		ENSG00000141580|ENST00000392325|WDR45B;ENST00000574828.1_1_17:80584850-80606216:-|nuORF	ENSG00000141580|ENST00000392325|WDR45B	ENSG00000141580|ENST00000392325|WDR45B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.93389892578125	3	437.870609	1310.59	0.91155	0.00039914	-3.725	-0.0016311	-2.8134	-0.0012319	437.8688617833448	20.362	0.63218	20.166	19.901	20.533	-0.19577					26	12	3	0	0	0	0.03519	1	561	561		22.58	0	1	100740			23920	5509	16432	16469	27791	27791					-0.05287384357507108
HVEQVHAL	8	Unmodified	_HVEQVHAL_					0	0	0		AKAP6|p.I121V|1|0.34|ENSG00000151320|chr14:32535590-32535590|A/G|missense_variant	AKAP6|p.I121V|1|0.34|ENSG00000151320|chr14:32535590-32535590|A/G|missense_variant	AKAP6|p.I121V|1|0.34|ENSG00000151320|chr14:32535590-32535590|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.72589111328125	2	466.751059	931.487565	-0.8805	-0.00041098	-0.39575	-0.00018471	-1.2762	-0.00059569	466.75076201303824	43.941	0.91055	43.697	43.204	44.115	-0.2444					32	24	3	0	0	0	0.027866	1	3995	3995		14.664	0	1	178250			23921	59	16433	16470	27792	27792					0.019080339575111793
HVEVLGPKS	9	Unmodified	_HVEVLGPKS_					0	0	0		ADCK4|p.T12Pfs*64|1|0.45|ENSG00000123815|chr19:40714600-40714600|C/-|frameshift_variant	ADCK4|p.T12Pfs*64|1|0.45|ENSG00000123815|chr19:40714600-40714600|C/-|frameshift_variant	ADCK4|p.T12Pfs*64|1|0.45|ENSG00000123815|chr19:40714600-40714600|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.7482604980469	2	483.274367	964.53418	0.7999	0.00038657	-0.87567	-0.00042319	-0.07577	-3.6618E-05	483.27404731810697	59.059	0.55355	58.817	58.583	59.137	-0.24166					14	13	2	0	0	0	0.024323	1	6477	6477		44.117	13.799	1	82078			23922	31	16434	16471	27793	27793					0.050494737888243435
HVFEKKVD	8	Unmodified	_HVFEKKVD_					0	0	0			REV__ENSG00000164089|ENST00000296486|ETNPPL	REV__ENSG00000164089|ENST00000296486|ETNPPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3068542480469	2	501.274367	1000.53418	-0.3289	-0.00016487	-4.0235	-0.0020169	-4.3524	-0.0021818	501.2719768984312	31.409	0.4608	31.421	31.084	31.545	0.011797					20	10	3	0	0	0	0.027866	1	2043	2043		25.45	13.243	1	503230	+		23923	25692	16435	16472	27794	27794					0.03393473788810297
HVFQPLLIA	9	Unmodified	_HVFQPLLIA_					0	0	0		ENSG00000153902|ENST00000310123|LGI4;ENST00000392225.7_1_19:35616099-35617731:-|nuORF;ENST00000587780.5_1_19:35616099-35616483:-|nuORF	ENSG00000153902|ENST00000310123|LGI4	ENSG00000153902|ENST00000310123|LGI4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2317504882812	2	519.310752	1036.60695	-0.16479	-8.5579E-05	3.12	0.0016202	2.9552	0.0015347	519.3121182824059	46.191	2.1576	46.094	45.157	47.315	-0.096649					88	59	3	0	0	0	0.024443	1	4343	4343		26.796	0	1	413360			23924	6364	16436	16473	27795	27795					0.09011227582232095
HVFTSQLIH	9	Unmodified	_HVFTSQLIH_					0	0	0			REV__ENSG00000135914|ENST00000258400|HTR2B	REV__ENSG00000135914|ENST00000258400|HTR2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2957763671875	2	541.293091	1080.57163	2.6666	0.0014434	3.6645	0.0019836	6.3311	0.003427	541.2949420049443	18.854	0.78699	18.917	18.649	19.436	0.063307					27	15	2	0	0	0	0.94809	1	300	300		29.15	1.2673	1	294280	+		23925	23595	16437	16474	27796	27796					0.03456565054420935
HVGLIGTFVL	10	Unmodified	_HVGLIGTFVL_					0	0	0			REV__ENST00000487651.5_1_7:100458687-100458885:+|nuORF	REV__ENST00000487651.5_1_7:100458687-100458885:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7598266601562	2	528.316035	1054.61752	-1.1161	-0.00058966	-0.55504	-0.00029323	-1.6711	-0.00088289	528.3146706990437	80.533	0.336	80.533	80.331	80.667	0					17	7	3	0	0	0	0.03519	1	10026	10026		30.504	15.639	1	105610	+		23926	33617	16438	16475	27797	27797					0.09239210236682993
HVGSRLYSV	9	Unmodified	_HVGSRLYSV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.27716064453125	2	509.277441	1016.54033	-0.34185	-0.0001741	-0.29036	-0.00014787	-0.63221	-0.00032197	509.2774401754386	35.445	1.3986	35.23	34.833	36.232	-0.21555					120	37	6	0	0	0	0.22902	3	2693	2693;2705;2719		85.161	26.379	1	8834000			23927	9935;15443	16439	16476	27798;27799;27800	27798					0.032719920203248876
HVGSRLYSV	9	Unmodified	_HVGSRLYSV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2774353027344	2	509.277441	1016.54033	-0.57041	-0.0002905	-0.1011	-5.149E-05	-0.67152	-0.00034199	509.27752290278903	35.432	2.1234	35.22	34.806	36.93	-0.21246					149	55	7	0	0	0	0.094442	3	2697	2685;2697;2711		112.41	51.503	1	8310200			23928	9935;15443	16439	16476	27801;27802;27803	27802					0.032719920203248876
HVGSRLYSV	9	Unmodified	_HVGSRLYSV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.2777404785156	2	509.277441	1016.54033	-0.53702	-0.00027349	-0.2358	-0.00012009	-0.77282	-0.00039358	509.2774489461317	35.354	1.7074	35.167	34.76	36.467	-0.18675					157	45	7	0	0	0	0.094442	1	2661	2661		112.41	54.181	1	9291900			23929	9935;15443	16439	16476	27804	27804					0.032719920203248876
HVGSSWVVVS	10	Unmodified	_HVGSSWVVVS_					0	0	0			REV__PHOSPHO2|p.D230H|1|0.14|ENSG00000144362|chr2:169701659-169701659|G/C|missense_variant	REV__PHOSPHO2|p.D230H|1|0.14|ENSG00000144362|chr2:169701659-169701659|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2484741210938	2	528.777274	1055.53999	-1.1581	-0.00061237	1.8339	0.00096972	0.67582	0.00035736	528.7774732454486	44.525	0.58234	44.281	43.975	44.557	-0.2444					23	15	2	0	0	0	0.03519	1	4147	4147		39.253	18.306	1	204330	+		23930	37371	16440	16477	27805	27805					0.01444572300465552
HVHERKLKS	9	Unmodified	_HVHERKLKS_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.2791137695312	2	567.330539	1132.64652	-0.3296	-0.00018699	-0.89096	-0.00050547	-1.2206	-0.00069246	567.3298917752611	94.967	0.7798	94.829	94.418	95.198	-0.13779					45	17	3	0	0	0	0.024466	1	11701	11701		24.519	0	1	306200			23931	127	16441	16478	27806	27806					0.08550747585650242
HVHKEAKT	8	Unmodified	_HVHKEAKT_					0	0	0			REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.78509521484375	2	475.264333	948.514114	0.42102	0.0002001	3.1209	0.0014833	3.5419	0.0016833	475.2664104264461	34.752	0.75535	34.752	34.515	35.27	0					42	19	4	0	0	0	0.027866	1	2581	2581		37.159	24.952	1	505380	+		23932	20661	16442	16479	27807	27807					0.03779722848844358
HVHKEAKT	8	Unmodified	_HVHKEAKT_					0	0	0			REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7847595214844	2	475.264333	948.514114	-0.45547	-0.00021647	3.7564	0.0017853	3.3009	0.0015688	475.26702390651917	34.528	1.0583	34.578	34.329	35.388	0.050255					55	27	4	0	0	0	0.027866	1	2515	2515		29.15	10.825	1	312290	+		23933	20661	16442	16479	27808	27808					0.03779722848844358
HVIGAVDGRD	10	Unmodified	_HVIGAVDGRD_					0	0	0		ENST00000400454.5_1_21:41414428-41416141:-|nuORF	ENST00000400454.5_1_21:41414428-41416141:-|nuORF	ENST00000400454.5_1_21:41414428-41416141:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7701416015625	2	519.76998	1037.52541	-1.3094	-0.00068057	1.1548	0.00060022	-0.15458	-8.0348E-05	519.7703858215457	35.765	0.74522	35.765	35.417	36.162	0					54	19	4	0	0	0	0.85955	1	2780	2780		56.721	3.3696	1	1642700			23934	13659	16443	16480	27809	27809					0.008145001523189421
HVILNSKT	8	Unmodified	_HVILNSKT_					0	0	0			REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.27508544921875	2	456.269084	910.523616	-0.17186	-7.8415E-05	1.7164	0.00078316	1.5446	0.00070475	456.27037866982823	27.825	1.7396	27.825	27.251	28.99	0					100	43	5	0	0	0	0.88442	1	1513	1513		52.299	0.96372	1	13112000	+		23935	20880	16444	16481	27810	27810					0.06477491134376123
HVIQYETLFNH	11	Unmodified	_HVIQYETLFNH_					0	0	0			REV__ENSG00000142065|ENST00000270001|ZFP14	REV__ENSG00000142065|ENST00000270001|ZFP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.9280700683594	3	467.570093	1399.68845	-0.62236	-0.000291	0.32834	0.00015352	-0.29402	-0.00013747	467.57000596624647	23.913	0.47645	23.865	23.656	24.133	-0.047146					26	10	4	0	0	0	0.024739	1	1006	1006		28.577	3.509	1	119170	+		23936	24132	16445	16482	27811	27811					0.004592584835108937
HVITRLEP	8	Unmodified	_HVITRLEP_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.27423095703125	2	482.782359	963.550165	-0.44349	-0.00021411	-0.48897	-0.00023607	-0.93247	-0.00045018	482.7821708922898	30.579	1.0881	30.587	30.123	31.211	0.0086708					46	25	4	0	0	0	0.027866	1	1945	1945		73.975	33.402	1	2467400	+		23937	21364	16446	16483	27812	27812					0.06693180025695256
HVITRLEP	8	Unmodified	_HVITRLEP_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2740783691406	2	482.782359	963.550165	-1.007	-0.00048618	-0.21517	-0.00010388	-1.2222	-0.00059006	482.78243106264523	30.295	1.0418	30.37	30.003	31.045	0.074314					39	24	2	0	0	0	0.027866	1	1865	1865		44.117	24.757	1	3086400	+		23938	21364	16446	16483	27813	27813					0.06693180025695256
HVIVKPGIT	9	Unmodified	_HVIVKPGIT_					0	0	0			REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF	REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.73223876953125	2	482.302927	962.591301	-0.4833	-0.0002331	0.026492	1.2777E-05	-0.45681	-0.00022032	482.3028591303505	57.158	0.41544	57.253	57.014	57.429	0.095306					18	10	2	0	0	0	0.024427	1	6301	6301		42.396	21.914	1	227690	+		23939	32004	16447	16484	27814	27814					0.10850941065177722
HVIWKIIP	8	Unmodified	_HVIWKIIP_					0	0	0		ENST00000296666.12_1_5:126888155-126888323:+|nuORF	ENST00000296666.12_1_5:126888155-126888323:+|nuORF	ENST00000296666.12_1_5:126888155-126888323:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7801208496094	2	503.315838	1004.61712	-0.44936	-0.00022617	3.3244	0.0016732	2.8751	0.0014471	503.31731347928496	52.446	1.251	52.327	52.048	53.299	-0.11876					67	31	4	0	0	0	0.027866	1	5579	5579		39.021	17.319	1	2148900			23940	11848	16448	16485	27815	27815					0.11499835307461126
HVKAKKAHTAS	11	Unmodified	_HVKAKKAHTAS_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428344726562	2	589.343646	1176.67274	-0.57069	-0.00033633	-0.8775	-0.00051715	-1.4482	-0.00085348	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0238	1	11306	11306		31.53	0	1	17343000			23941	6595	16449	16486	27816	27816					0.09147016757151505
HVKKSFTF	8	Unmodified	_HVKKSFTF_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.25048828125	2	497.279452	992.544351	-0.19253	-9.5743E-05	-3.9561	-0.0019673	-4.1486	-0.002063	497.2773196048325	25.492	0.37579	25.322	25.081	25.457	-0.17078					13	8	2	0	0	0	0.027866	1	1182	1182		26.796	8.4717	1	74889	+		23942	27472	16450	16487	27817	27817					0.04778081514052701
HVKKVKKF	8	Unmodified	_HVKKVKKF_					0	0	0			REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2796325683594	2	507.334562	1012.65457	-0.41254	-0.0002093	0.35902	0.00018214	-0.053518	-2.7152E-05	507.3346484470387	49.86	0.18063	49.86	49.805	49.986	0					6	4	2	0	0	0	0.027866	1	5179	5179		28.254	0	1	79032	+		23943	32632	16451	16488	27818	27818					0.14874926573088487
HVKTRPDR	8	Unmodified	_HVKTRPDR_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2695617675781	2	504.788507	1007.56246	0.47971	0.00024215	-0.32961	-0.00016638	0.1501	7.5771E-05	504.7883592995676	19.133	0.69289	18.929	18.609	19.302	-0.20371					25	13	3	0	0	0	0.027866	1	347	347		14.137	0	1	149150	+		23944	28718	16452	16489	27819	27819					0.058982164887424915
HVKVLNTSL	9	Unmodified	_HVKVLNTSL_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.80291748046875	2	505.803291	1009.59203	-0.66309	-0.0003354	-0.29592	-0.00014967	-0.95901	-0.00048507	505.8034362310781	43.394	1.0316	43.156	42.879	43.911	-0.23736					47	27	3	0	0	0	0.12602	1	3961	3961		104.75	16.992	1	2101800			23945	15514	16453	16490	27820	27820					0.08761735714244878
HVKVLNTSL	9	Unmodified	_HVKVLNTSL_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.803291	1009.59203	-0.1346	-6.8079E-05	-0.40662	-0.00020567	-0.54122	-0.00027375	505.80321597983954	43.241	1.102	43.128	42.815	43.917	-0.11253	-0.03251	-0.00042898	NaN	104.75	49	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2387100			23946	15514	16453	16490							0.08761735714244878
HVKVLNTSL	9	Unmodified	_HVKVLNTSL_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.803291	1009.59203	-1.0307	-0.00052135	0.24246	0.00012264	-0.78827	-0.00039871	505.80354402786463	43.424	1.2936	43.198	42.912	44.206	-0.22597	0.036935	0.00022764	NaN	104.75	54	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2254500			23947	15514	16453	16490							0.08761735714244878
HVKVSSNI	8	Unmodified	_HVKVSSNI_					0	0	0		ENST00000272224.4_1_2:20872387-20872759:+|nuORF	ENST00000272224.4_1_2:20872387-20872759:+|nuORF	ENST00000272224.4_1_2:20872387-20872759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2357482910156	2	442.253434	882.492316	0.30112	0.00013317	4.2175	0.0018652	4.5186	0.0019984	442.25379962729323	33.591	0.71481	33.647	33.176	33.89	0.056572					59	18	5	0	0	0	0.027866	1	2396	2396		65.803	21.686	1	664250			23948	11649	16454	16491	27821	27821					0.046369181002773985
HVKVWISF	8	Unmodified	_HVKVWISF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2881774902344	2	508.28982	1014.56509	-0.18794	-9.553E-05	-4.0244	-0.0020456	-4.2124	-0.0021411	508.28757757474756	52.773	1.1675	52.584	52.227	53.395	-0.18982					49	29	2	0	0	0	0.65272	1	5483	5483		71.378	1.7503	1	1894400			23949	2313	16455	16492	27822	27822					0.05838671893718583
HVLEEVQQV	9	Unmodified	_HVLEEVQQV_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7876586914062	2	540.787838	1079.56112	-0.40083	-0.00021677	-0.16092	-8.7026E-05	-0.56176	-0.00030379	540.7876366148058	46.64	1.017	46.64	46.378	47.395	0					78	27	4	0	0	0	0.28753	1	4628	4628		77.318	3.0625	1	4513600			23950	4972	16456	16493	27823	27823					0.024525376093379236
HVLEEVQQV	9	Unmodified	_HVLEEVQQV_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7874755859375	2	540.787838	1079.56112	-0.85058	-0.00045998	0.52311	0.00028289	-0.32747	-0.00017709	540.7880211532611	46.611	1.0057	46.663	46.375	47.381	0.051395					70	27	4	0	0	0	0.37611	1	4560	4560		67.494	3.2864	1	4702300			23951	4972	16456	16493	27824	27824					0.024525376093379236
HVLEGLQEV	9	Unmodified	_HVLEGLQEV_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2867126464844	2	512.277106	1022.53966	0.28067	0.00014378	-0.64711	-0.0003315	-0.36644	-0.00018772	512.2767723509505	58.633	0.91465	58.633	58.193	59.108	0					51	24	3	0	0	0	0.024466	1	6682	6682		39.253	3.6345	1	547450			23952	4022	16457	16494	27825	27825					0.029291525806115715
HVLGGGPNI	9	Unmodified	_HVLGGGPNI_					0	0	0			REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	431.2508239746094	2	432.240327	862.466101	0.077015	3.3289E-05	1.2923	0.00055857	1.3693	0.00059186	432.24067570419527	42.627	0.88728	42.487	42.176	43.063	-0.13929					52	24	3	0	0	0	0.024535	1	3987	3987		7.1934	0	1	1414600	+		23953	29668	16458	16495	27826	27826					0.02936648928800878
HVLGGGPNI	9	Unmodified	_HVLGGGPNI_					0	0	0			REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	432.240327	862.466101	0.3743	0.00016179	1.2455	0.00053836	1.6198	0.00070015	432.2407609993124	42.48	0.59852	42.48	42.187	42.786	0	-0.041116	-0.00020715	NaN	7.1934	44	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1442500	+		23954	29668	16458	16495							0.02936648928800878
HVLGGGPNI	9	Unmodified	_HVLGGGPNI_					0	0	0			REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	432.240327	862.466101	0.37169	0.00016066	1.3336	0.00057644	1.7053	0.0007371	432.2407807686829	42.555	0.61079	42.581	42.323	42.934	0.026016	0.059985	-0.000131	NaN	7.1934	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1432700	+		23955	29668	16458	16495							0.02936648928800878
HVLGGGPNI	9	Unmodified	_HVLGGGPNI_					0	0	0			REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	432.240327	862.466101	0.16571	7.1627E-05	1.4557	0.00062923	1.6214	0.00070086	432.24087098610596	42.593	0.52927	42.47	42.195	42.724	-0.12299	-0.050804	-2.5415E-05	NaN	7.1934	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1186700	+		23956	29668	16458	16495							0.02936648928800878
HVLGGGPNI	9	Unmodified	_HVLGGGPNI_					0	0	0			REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	432.240327	862.466101	-0.14035	-6.0666E-05	1.7446	0.00075408	1.6042	0.00069342	432.24098222251797	42.779	0.68512	42.542	42.268	42.953	-0.23736	0.020633	0.00022429	NaN	7.1934	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081300	+		23957	29668	16458	16495							0.02936648928800878
HVLGGGPNI	9	Unmodified	_HVLGGGPNI_					0	0	0			REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	REV__ENST00000262644.8_1_8:57873413-57873482:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	432.240327	862.466101	-0.076226	-3.2948E-05	1.5832	0.0006843	1.5069	0.00065136	432.2409367513804	42.792	0.80161	42.566	42.26	43.061	-0.22597	0.044762	8.4737E-05	NaN	7.1934	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106900	+		23958	29668	16458	16495							0.02936648928800878
HVLHVQLN	8	Unmodified	_HVLHVQLN_					0	0	0		ENST00000600178.5_1_19:39307991-39322412:-|nuORF;ENST00000598707.5_1_19:39306922-39322412:-|nuORF;ENSG00000104823|ENST00000221418|ECH1;ENST00000596118.1_1_19:39321764-39322031:-|nuORF	ENST00000600178.5_1_19:39307991-39322412:-|nuORF	ENST00000600178.5_1_19:39307991-39322412:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2847595214844	2	480.274701	958.534849	-0.26958	-0.00012947	-1.5523	-0.00074555	-1.8219	-0.00087503	480.27410345343986	77.577	0.45782	77.591	77.361	77.819	0.013504					22	10	3	0	0	0	0.027866	1	9488	9488		28.254	1.4582	1	141390			23959	2603	16459	16496	27827	27827					0.05392313228514922
HVLKVQDLS	9	Unmodified	_HVLKVQDLS_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7698974609375	2	519.800749	1037.58694	-1.1813	-0.00061404	0.61052	0.00031735	-0.57078	-0.00029669	519.8008967989175	35.469	0.43521	35.447	35.233	35.669	-0.021763					20	10	2	0	0	0	0.02435	1	2740	2740		42.396	16.822	1	331940			23960	2747	16460	16497	27828	27828					0.06965431851608628
HVLLLTISF	9	Unmodified	_HVLLLTISF_					0	0	0			REV__nc|ENSG00000186919|Q401N2-3|ZACN	REV__nc|ENSG00000186919|Q401N2-3|ZACN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.8173217773438	2	521.81841	1041.62227	-0.41245	-0.00021522	0.62561	0.00032645	0.21316	0.00011123	521.8185586576719	70.408	1.0348	70.136	69.364	70.399	-0.27185					68	25	4	0	0	0	0.75282	2	8177	8177;8188		42.474	1.9018	1	2639200	+		23961	27897	16461	16498	27829;27830	27829					0.1031209437940106
HVLLLTISF	9	Unmodified	_HVLLLTISF_					0	0	0			REV__nc|ENSG00000186919|Q401N2-3|ZACN	REV__nc|ENSG00000186919|Q401N2-3|ZACN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.8170776367188	2	521.81841	1041.62227	0.19659	0.00010258	-0.15758	-8.2229E-05	0.039007	2.0355E-05	521.8181488799634	70.317	1.1096	70.063	69.272	70.382	-0.25437					70	27	4	0	0	0	0.75282	2	8167	8167;8201		42.474	8.9589	1	2290600	+		23962	27897	16461	16498	27831;27832	27831					0.1031209437940106
HVLLLTISF	9	Unmodified	_HVLLLTISF_					0	0	0			REV__nc|ENSG00000186919|Q401N2-3|ZACN	REV__nc|ENSG00000186919|Q401N2-3|ZACN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.816650390625	2	521.81841	1041.62227	0.30277	0.00015799	-0.27836	-0.00014525	0.024405	1.2735E-05	521.8180965462368	70.287	1.0999	70.073	69.153	70.253	-0.21425					75	26	4	0	0	0	0.75282	3	8150	8150;8162;8192		42.474	8.9589	1	2796000	+		23963	27897	16461	16498	27833;27834;27835	27833					0.1031209437940106
HVLPLGRFF	9	Unmodified	_HVLPLGRFF_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3229370117188	2	543.316369	1084.61818	-0.81539	-0.00044302	-0.26359	-0.00014322	-1.079	-0.00058623	543.316126172473	103.46	1.0261	103.46	103	104.03	0					31	24	2	0	0	0	0.024541	1	13327	13327		13.775	0.81615	1	144510	+		23964	19302	16462	16499	27836	27836					0.07926049676370894
HVLPLGRFF	9	Unmodified	_HVLPLGRFF_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.316369	1084.61818	-0.65151	-0.00035398	-0.27997	-0.00015211	-0.93148	-0.00050609	543.316062921055	103.39	1.0554	103.39	103.1	104.15	0.0054169	0.041374	6.1725E-05	NaN	13.775	33	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165800	+		23965	19302	16462	16499							0.07926049676370894
HVLPLGRFF	9	Unmodified	_HVLPLGRFF_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.316369	1084.61818	-0.54825	-0.00029788	-0.26637	-0.00014472	-0.81463	-0.0004426	543.3161410394779	103.48	1.0068	103.47	103.02	104.02	-0.0044174	0.12177	7.6499E-05	NaN	13.775	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158250	+		23966	19302	16462	16499							0.07926049676370894
HVLPLGRFF	9	Unmodified	_HVLPLGRFF_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.316369	1084.61818	-0.35293	-0.00019175	-0.35788	-0.00019444	-0.7108	-0.00038619	543.3161247098137	103.46	1.0168	103.29	103	104.01	-0.17033	-0.059967	-2.2934E-05	NaN	13.775	34	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176450	+		23967	19302	16462	16499							0.07926049676370894
HVLPPYAI	8	Unmodified	_HVLPPYAI_					0	0	0			REV__sp|P03184|UL32_EBVB9PackagingproteinUL32homologOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFLF1PE=1SV=1	REV__sp|P03184|UL32_EBVB9PackagingproteinUL32homologOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFLF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7425842285156	2	455.263271	908.511988	-0.22571	-0.00010276	-4.4571	-0.0020291	-4.6828	-0.0021319	455.2612839905862	43.384	0.83371	43.384	43.038	43.872	0					26	22	2	0	0	0	0.027866	1	4043	4043		24.504	0	1	120760	+		23968	37527	16463	16500	27837	27837					0.054072941110462125
HVLSELDIMV	10	Unmodified	_HVLSELDIMV_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.7901000976562	2	578.307549	1154.60055	0.030815	1.782E-05	-3.369	-0.0019483	-3.3382	-0.0019305	578.3057593346726	77.579	1.4788	77.317	77.028	78.507	-0.26202					45	34	2	0	0	0	0.03519	1	9357	9357		20.947	0	1	148290			23969	4740	16464	16501	27838	27838					0.029429215685240706
HVLVALGLL	9	Unmodified	_HVLVALGLL_					0	0	0			REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7388916015625	2	467.807845	933.601138	-0.15601	-7.2983E-05	0.18426	8.6199E-05	0.028251	1.3216E-05	467.8077682653269	23.657	0.45687	23.477	23.281	23.738	-0.17989					19	10	3	0	0	0	0.024541	1	943	943		14.664	0	1	133450	+		23970	21014	16465	16502	27839	27839					0.13168129070550094
HVLVLLKLL	9	Unmodified	_HVLVLLKLL_					0	0	0			REV__ENST00000426595.1_1_7:55979573-55979666:+|nuORF	REV__ENST00000426595.1_1_7:55979573-55979666:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.313720703125	2	524.36807	1046.72159	-0.51264	-0.00026881	0.72782	0.00038164	0.21518	0.00011283	524.3683076310199	73.614	0.3702	73.343	73.05	73.421	-0.27126					10	9	2	0	0	0	0.024541	1	8935	8935		3.9852	0	1	82567	+		23971	32276	16466	16503	27840	27840					0.20009537064174765
HVMLGAET	8	Unmodified	_HVMLGAET_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2560729980469	2	429.212921	856.411288	-0.85774	-0.00036815	1.0225	0.00043888	0.16478	7.0726E-05	429.21320055400486	44.984	1.8797	44.835	43.635	45.515	-0.1488					84	54	2	0	0	0	0.027866	1	4249	4249		20.482	13.288	1	399560			23972	9040	16467	16504	27841	27841					-0.022661059341203327
HVMLGAET	8	Unmodified	_HVMLGAET_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	429.212921	856.411288	-0.32177	-0.00013811	0.47917	0.00020567	0.1574	6.756E-05	429.2130327541161	44.988	1.0133	44.888	44.513	45.526	-0.099445	0.012765	-0.0002259	NaN	20.482	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230760			23973	9040	16467	16504							-0.022661059341203327
HVMLGAET	8	Unmodified	_HVMLGAET_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	429.212921	856.411288	0.02402	1.031E-05	0.34063	0.0001462	0.36465	0.00015651	429.21292140829087	45.196	1.3182	44.944	44.468	45.786	-0.25252	0.067899	-0.00034483	NaN	20.482	49	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150880			23974	9040	16467	16504							-0.022661059341203327
HVMLGAET	8	Unmodified	_HVMLGAET_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	429.212921	856.411288	-0.14369	-6.1675E-05	0.26384	0.00011324	0.12014	5.1568E-05	429.2129618747072	45.206	1.1198	44.995	44.399	45.519	-0.21109	0.119	-0.00041075	NaN	20.482	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142990			23975	9040	16467	16504							-0.022661059341203327
HVNGKVAL	8	Unmodified	_HVNGKVAL_					0	0	0		nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD;nc|ENSG00000164120|P15428-4|HPGD;nc|ENSG00000164120|P15428-2|HPGD	nc|ENSG00000164120|P15428-5|HPGD	nc|ENSG00000164120|P15428-5|HPGD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	419.2509765625	2	419.250695	836.486836	-0.66689	-0.00027959	1.3539	0.00056762	0.68701	0.00028803	419.25110660424514	26.019	1.947	25.783	25.222	27.169	-0.23603					79	49	3	0	0	0	0.40853	3	1295	1286;1295;1308		96.048	38.595	1	2911500			23976	7218	16468	16505	27842;27843;27844	27843					0.06205239308462751
HVNGKVAL	8	Unmodified	_HVNGKVAL_					0	0	0		nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD;nc|ENSG00000164120|P15428-4|HPGD;nc|ENSG00000164120|P15428-2|HPGD	nc|ENSG00000164120|P15428-5|HPGD	nc|ENSG00000164120|P15428-5|HPGD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	419.2509460449219	2	419.250695	836.486836	-0.16849	-7.0638E-05	0.92073	0.00038602	0.75225	0.00031538	419.25096521574505	25.772	1.9367	25.601	24.912	26.848	-0.17078					104	49	6	0	0	0	0.40853	3	1251	1241;1251;1263		96.048	41.283	1	2753700			23977	7218	16468	16505	27845;27846;27847	27846					0.06205239308462751
HVNGKVAL	8	Unmodified	_HVNGKVAL_					0	0	0		nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD;nc|ENSG00000164120|P15428-4|HPGD;nc|ENSG00000164120|P15428-2|HPGD	nc|ENSG00000164120|P15428-5|HPGD	nc|ENSG00000164120|P15428-5|HPGD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	419.2507019042969	2	419.250695	836.486836	-0.75085	-0.00031479	1.1327	0.00047488	0.38183	0.00016008	419.2510790431559	25.901	2.1002	25.738	25.414	27.514	-0.16331					103	53	6	0	0	0	0.52467	3	1235	1235;1246;1259		83.287	40.813	1	2414200			23978	7218	16468	16505	27848;27849;27850	27848					0.06205239308462751
HVNLLDIAINK	11	Unmodified	_HVNLLDIAINK_					0	0	0			REV__ENST00000343776.9_1_1:227842171-227842369:+|nuORF	REV__ENST00000343776.9_1_1:227842171-227842369:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	624.3750610351562	2	625.366787	1248.71902	0.13061	8.1679E-05	-1.6523	-0.0010333	-1.5217	-0.00095163	625.365454433416	106.06	0.26394	105.93	105.77	106.03	-0.1238					14	9	2	0	0	0	0.024808	1	13205	13205		18.262	3.3972	1	83958	+		23979	30670	16469	16506	27851	27851					0.10461036868559859
HVPALFKK	8	Unmodified	_HVPALFKK_					0	0	0		PRKAA2|p.T221A|1|0.43|ENSG00000162409|chr1:56696032-56696032|A/G|missense_variant	PRKAA2|p.T221A|1|0.43|ENSG00000162409|chr1:56696032-56696032|A/G|missense_variant	PRKAA2|p.T221A|1|0.43|ENSG00000162409|chr1:56696032-56696032|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2723083496094	2	470.292362	938.570172	4.0872	0.0019222	2.9832	0.001403	7.0704	0.0033251	470.29387853859765	18.737	1.81	18.8	18.55	20.36	0.063307					78	36	4	0	0	0	0.027866	1	264	264		28.254	14.479	1	3904300			23980	18994	16470	16507	27852	27852					0.09842975756316719
HVPLHLSR	8	Unmodified	_HVPLHLSR_					0	0	0			REV__ENST00000552916.5_1_12:56965569-56983042:+|nuORF	REV__ENST00000552916.5_1_12:56965569-56983042:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7976989746094	2	479.782693	957.550834	1.2294	0.00058987	-3.1806	-0.001526	-1.9511	-0.00093611	479.781112875132	18.442	0.44362	18.286	18.002	18.445	-0.15637					12	8	2	0	0	0	0.027866	1	318	318		13.775	0	1	17912	+		23981	34965	16471	16508	27853	27853					0.07036019465431309
HVPMYLFL	8	Unmodified	_HVPMYLFL_					0	0	0		ENSG00000279000|ENST00000641238|OR10A6;OR10A6|p.L66V|1|0.67|ENSG00000279000|chr11:7928467-7928467|A/C|missense_variant;ENSG00000170683|ENST00000642047|OR10A3	ENSG00000279000|ENST00000641238|OR10A6	ENSG00000279000|ENST00000641238|OR10A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.81024169921875	2	510.272781	1018.53101	-0.46005	-0.00023475	2.2388	0.0011424	1.7787	0.00090764	510.2715552177118	48.972	0.67727	48.819	48.469	49.146	-0.15277					28	18	3	0	0	0	0.027866	1	5055	5055		24.504	17.311	1	166440			23982	11070	16472	16509	27854	27854					0.022485074104451996
HVPPVPCRV	9	Unmodified	_HVPPVPCRV_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;ENST00000462540.1_1_4:154475378-154479541:+|nuORF	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7840576171875	2	502.278929	1002.54331	0.096834	4.8638E-05	4.0387	0.0020285	4.1355	0.0020772	502.28138438763153	72.557	0.42603	72.292	72.127	72.553	-0.26479					14	9	2	0	0	0	0.024466	1	8504	8504		33.516	1.5607	1	219730			23983	3857	16473	16510	27855	27855					0.0421354387348174
HVPREPPVS	9	Unmodified	_HVPREPPVS_					0	0	0		ENSG00000165282|ENST00000378617|PIGO;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF	ENSG00000165282|ENST00000378617|PIGO	ENSG00000165282|ENST00000378617|PIGO	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.2776184082031	2	509.277441	1016.54033	-0.53702	-0.00027349	-0.2358	-0.00012009	-0.77282	-0.00039358	509.2774489461317	35.354	1.7074	35.167	34.76	36.467	-0.18675					157	45	7	0	0	0	0.62163	1	2673	2673		51.335	0.14276	1	9291900			23984	7392	16474	16511	27856	27856					0.03271992020336256
HVQHELKK	8	Unmodified	_HVQHELKK_					0	0	0			REV__ENST00000607016.1_1_6:34255549-34255657:-|nuORF	REV__ENST00000607016.1_1_6:34255549-34255657:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7931213378906	2	509.793258	1017.57196	1.4032	0.00071532	-1.2498	-0.00063715	0.15334	7.8173E-05	509.7924543273995	17.235	0.35235	17.081	16.907	17.259	-0.15403					17	6	4	0	0	0	0.94517	1	154	154		45.952	3.5558	1	242040	+		23985	35942	16475	16512	27857	27857					0.06387984774266897
HVQLRINLIVS	11	Unmodified	_HVQLRINLIVS_					0	0	0			REV__ENSG00000256537|ENST00000622602|SMIM10L1	REV__ENSG00000256537|ENST00000622602|SMIM10L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.53021240234375	3	431.266345	1290.7772	2.3077	0.00099523	-0.074189	-3.1995E-05	2.2335	0.00096324	431.26708836147503	23.866	1.0422	23.683	23.33	24.372	-0.18276					32	23	3	0	0	0	0.024727	1	928	928		36.318	16.003	1	96679	+		23986	29082	16476	16513	27858	27858					0.14344718513825683
HVQLRINLIVS	11	Unmodified	_HVQLRINLIVS_					0	0	0			REV__ENSG00000256537|ENST00000622602|SMIM10L1	REV__ENSG00000256537|ENST00000622602|SMIM10L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	431.266345	1290.7772	0.39229	0.00016918	1.133	0.00048861	1.5253	0.00065779	431.267097103986	24.039	0.6225	23.824	23.554	24.177	-0.2151	0.043645	0.00013989	NaN	36.318	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110450	+		23987	29082	16476	16513							0.14344718513825683
HVQQNRAVL	9	Unmodified	_HVQQNRAVL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8163452148438	2	532.801614	1063.58868	-1.2034	-0.00064119	0.93359	0.00049742	-0.26984	-0.00014377	532.8021178037312	25.073	0.65899	25.073	24.786	25.445	0					47	15	5	0	0	0	0.024294	1	1160	1160		65.803	5.6849	1	371620			23988	2157	16477	16514	27859	27859					0.05942485660239072
HVQRRRRRRRP	11	Unmodified	_HVQRRRRRRRP_					0	0	0			REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2869262695312	3	524.992946	1571.95701	0.49355	0.00025911	0.94673	0.00049703	1.4403	0.00075614	524.9930561409276	18.668	0.34659	18.512	18.297	18.643	-0.15637					8	6	2	0	0	0	0.024886	1	314	314		10.104	6.4848	1	14941	+		23989	32751	16478	16515	27860	27860					0.19390880084847595
HVQTQTGQN	9	Unmodified	_HVQTQTGQN_					0	0	0		nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-6|CREM;ENSG00000095794|ENST00000685392|CREM;nc|ENSG00000095794|Q03060-21|CREM;nc|ENSG00000095794|Q03060-26|CREM;ENST00000496626.5_1_10:35437299-35441216:+|nuORF;ENST00000482646.5_1_10:35426742-35437470:+|nuORF;nc|ENSG00000095794|Q03060-25|CREM;nc|ENSG00000095794|Q03060-32|CREM	nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-1|CREM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7139892578125	2	506.743962	1011.47337	-1.45	-0.00073477	1.6332	0.00082763	0.18324	9.2857E-05	506.74477084784985	33.857	0.27422	33.681	33.622	33.896	-0.17557					11	6	2	0	0	0	0.024457	1	2464	2464		29.15	9.7896	1	140240			23990	18117	16479	16516	27861	27861					-0.031906632614322916
HVRGLYLL	8	Unmodified	_HVRGLYLL_					0	0	0			REV__ENSG00000235863|ENST00000451237|B3GALT4	REV__ENSG00000235863|ENST00000451237|B3GALT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2153625488281	2	485.795269	969.575986	0.28335	0.00013765	-0.90137	-0.00043788	-0.61802	-0.00030023	485.79417414407095	97.978	0.58658	97.988	97.728	98.315	0.010231					15	13	2	0	0	0	0.027866	1	12481	12481		35.201	0	1	73032	+		23991	28929	16480	16517	27862	27862					0.08998074267992706
HVRQHYRLSSS	11	Unmodified	_HVRQHYRLSSS_					0	0	0			REV__ENSG00000269343|ENST00000594901|ZNF587B	REV__ENSG00000269343|ENST00000594901|ZNF587B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.24237060546875	3	457.24097	1368.70108	0.30902	0.0001413	1.2524	0.00057265	1.5614	0.00071395	457.2415420181703	71.608	0.65948	71.333	70.967	71.626	-0.27509					46	15	4	0	0	0	1.0465	1	8376	8376		26.063	1.8316	1	1642500	+		23992	29157	16481	16518	27863	27863					0.03147714666420143
HVRRHITHDER	11	Unmodified	_HVRRHITHDER_					0	0	0		ENST00000566842.5_1_16:29918195-29922616:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2369384765625	3	485.927385	1454.76033	-0.26234	-0.00012748	1.2187	0.00059221	0.95639	0.00046474	485.92822120450484	35.397	0.38911	35.21	34.911	35.3	-0.18675					18	9	3	0	0	0	0.024726	1	2659	2659		20.315	0	1	87597			23993	8511	16482	16519	27864	27864					0.05113610680587044
HVSLVKLLT	9	Unmodified	_HVSLVKLLT_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3046875	2	505.32386	1008.63317	0.46511	0.00023503	-0.96514	-0.00048771	-0.50002	-0.00025267	505.32324615171984	69.703	0.63418	69.41	69.202	69.836	-0.29291					28	15	3	0	0	0	0.023655	1	8377	8377		90.37	19.074	1	212810			23994	8014	16483	16520	27865	27865					0.12919496753693238
HVSLVQLTL	9	Unmodified	_HVSLVQLTL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.30596923828125	2	505.305667	1008.59678	-0.1772	-8.9538E-05	-0.206	-0.00010409	-0.3832	-0.00019363	505.3055589548448	69.567	1.1302	69.567	68.898	70.029	0					80	28	4	0	0	0	0.091713	5	8374	8366;8374;8386;8398;8413		113.41	42.116	1	6687000			23995	4632	16484	16521	27866;27867;27868;27869;27870	27867					0.09282619856992369
HVSLVQLTL	9	Unmodified	_HVSLVQLTL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3055114746094	2	505.305667	1008.59678	0.52634	0.00026596	-0.87061	-0.00043992	-0.34427	-0.00017396	505.3051955886164	69.907	1.1048	69.614	68.933	70.038	-0.29291					79	27	4	0	0	0	0.057894	4	8400	8387;8400;8412;8426		125.81	38.06	1	6499700			23996	4632	16484	16521	27871;27872;27873;27874	27872					0.09282619856992369
HVSLVQLTL	9	Unmodified	_HVSLVQLTL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.30572509765625	2	505.305667	1008.59678	-0.32733	-0.0001654	-0.047861	-2.4184E-05	-0.37519	-0.00018959	505.3056046204511	69.656	1.2061	69.671	68.9	70.107	0.015121					86	30	4	0	0	0	0.067814	4	8309	8309;8321;8334;8349		122.18	53.389	1	5746700			23997	4632	16484	16521	27875;27876;27877;27878	27875					0.09282619856992369
HVSLVQLTL	9	Unmodified	_HVSLVQLTL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.305667	1008.59678	-0.60279	-0.00030459	0.577	0.00029156	-0.025793	-1.3033E-05	505.30568934295707	69.538	0.75082	69.27	68.912	69.662	-0.26724	-0.14083	0.00091377	NaN	125.81	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135400			23998	4632	16484	16521							0.09282619856992369
HVSLVQLTL	9	Unmodified	_HVSLVQLTL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.305667	1008.59678	0.050124	2.5328E-05	0.0057	2.8803E-06	0.055824	2.8208E-05	505.30530757656277	69.424	0.86756	69.173	68.782	69.649	-0.25063	-0.23783	0.0003364	NaN	125.81	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1134100			23999	4632	16484	16521							0.09282619856992369
HVSLVQLTL	9	Unmodified	_HVSLVQLTL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.305667	1008.59678	-0.41388	-0.00020914	0.45976	0.00023232	0.045879	2.3183E-05	505.30565223591356	69.393	0.78734	69.171	68.81	69.597	-0.22246	-0.24028	0.00079528	NaN	125.81	48	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025600			24000	4632	16484	16521							0.09282619856992369
HVSNEEPFVM	10	Unmodified	_HVSNEEPFVM_					0	0	0		ENST00000530823.1_1_11:12138263-12138401:+|nuORF	ENST00000530823.1_1_11:12138263-12138401:+|nuORF	ENST00000530823.1_1_11:12138263-12138401:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	594.768310546875	2	594.771331	1187.52811	-1.0765	-0.00064026	-4.1894	-0.0024917	-5.2659	-0.003132	594.7687323673883	49.17	1.0122	49.17	48.83	49.842	0					72	27	4	0	0	0	0.82838	1	5074	5074		58.782	4.0056	1	2967800			24001	16245	16485	16522	27879	27879					-0.05815412505035056
HVSVRRFE	8	Unmodified	_HVSVRRFE_					0	0	0		nc|ENSG00000143919|Q7Z624-2|CAMKMT;ENSG00000143919|ENST00000378494|CAMKMT	nc|ENSG00000143919|Q7Z624-2|CAMKMT	nc|ENSG00000143919|Q7Z624-2|CAMKMT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2232666015625	2	515.283057	1028.55156	0.41346	0.00021305	-1.3558	-0.00069864	-0.94238	-0.00048559	515.2821300719038	21.052	0.58977	20.856	20.582	21.172	-0.19577					18	11	3	0	0	0	0.027866	1	643	643		16.473	4.2663	1	66441			24002	5699	16486	16523	27880	27880					0.038428141144549954
HVTIYYNRMV	10	Unmodified	_HVTIYYNRMV_					0	0	0			REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|17|1|anti-sense	REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|17|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.7206726074219	3	432.557019	1294.64923	-0.17685	-7.6497E-05	2.3814	0.0010301	2.2046	0.00095361	432.55812436137234	30.907	0.38091	30.666	30.453	30.834	-0.24109					14	8	2	0	0	0	0.03519	1	2004	2004		28.081	8.8188	1	183960	+		24003	37337	16487	16524	27881	27881					0.013688349282801937
HVTKKIPL	8	Unmodified	_HVTKKIPL_					0	0	0			REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.2889709472656	2	468.30547	934.596387	-0.33403	-0.00015643	-1.441	-0.00067482	-1.775	-0.00083125	468.30531565501445	49.133	0.72927	48.853	48.394	49.123	-0.27977					28	19	2	0	0	0	0.027866	1	4871	4871		38.806	10.924	1	385530	+		24004	19499	16488	16525	27882	27882					0.12647244927802603
HVTKQKHLHL	10	Unmodified	_HVTKQKHLHL_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.21453857421875	3	414.247285	1239.72002	-0.50084	-0.00020747	-2.3735	-0.00098321	-2.8743	-0.0011907	414.2462184535769	24.105	1.1548	24.057	23.243	24.398	-0.047148					34	26	3	0	0	0	0.03519	1	1028	1028		28.081	3.8497	1	74958			24005	6560	16489	16526	27883	27883					0.10975296028141202
HVTKWPPVARN	11	Unmodified	_HVTKWPPVARN_					0	0	0			REV__ENST00000497691.5_1_6:3273291-3410459:-|nuORF	REV__ENST00000497691.5_1_6:3273291-3410459:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.577392578125	3	435.578923	1303.71494	0.39261	0.00017101	-3.1323	-0.0013644	-2.7397	-0.0011934	435.57749282765735	110.43	0.71253	110.44	110.12	110.84	0.0069427					55	19	4	0	0	0	1.0123	1	13900	13900		34.087	10.709	1	361140	+		24006	33856	16490	16527	27884	27884					0.07522992165513642
HVTLNKRQRFV	11	Unmodified	_HVTLNKRQRFV_					0	0	0			REV__ENSG00000186448|ENST00000344387|ZNF197	REV__ENSG00000186448|ENST00000344387|ZNF197	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6083679199219	3	466.608993	1396.80515	0.67563	0.00031525	-2.6518	-0.0012373	-1.9761	-0.00092208	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0764	1	12528	12528		17.833	1.3033	1	1258700	+		24007	27857	16491	16528	27885	27885					0.12262041493909237
HVTYIDSDGV	10	Unmodified	_HVTYIDSDGV_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.829833984375	2	553.261653	1104.50875	-0.64258	-0.00035551	-2.809	-0.0015541	-3.4515	-0.0019096	553.2621894159322	89.095	0.16314	88.932	88.849	89.012	-0.1626					5	3	2	0	0	0	0.03519	1	10862	10862		34.173	0	1	23940	+		24008	20396	16492	16529	27886	27886					-0.03932045524265959
HVTYNQKLQ	9	Unmodified	_HVTYNQKLQ_					0	0	0		ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.8348999023438	2	565.80128	1129.58801	-1.3378	-0.00075694	-2.3743	-0.0013434	-3.7121	-0.0021003	565.7998726329421	21.652	0.9116	21.723	21.451	22.362	0.071487					43	18	4	0	0	0	0.024506	1	638	638		10.866	3.1753	1	320390			24009	7900	16493	16530	27887	27887					0.028396462205364514
HVVFGKVL	8	Unmodified	_HVVFGKVL_					0	0	0		ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2065124511719	2	449.779088	897.543623	0.52004	0.0002339	-4.1425	-0.0018632	-3.6225	-0.0016293	449.7772051733966	22.948	0.28033	22.746	22.546	22.826	-0.20193					7	5	2	0	0	0	0.027866	1	853	853		26.796	0	1	20077			24010	7605	16494	16531	27888	27888					0.09075286864992904
HVVFGKVL	8	Unmodified	_HVVFGKVL_					0	0	0		ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	449.779088	897.543623	-0.6329	-0.00028466	-3.4141	-0.0015356	-4.047	-0.0018203	449.77684424661516	22.894	0.2326	22.968	22.791	23.024	0.073956	0.12491	0.00093328	NaN	26.796	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7317.9			24011	7605	16494	16531							0.09075286864992904
HVVFGLVI	8	Unmodified	_HVVFGLVI_					0	0	0		ENSG00000114857|ENST00000232978|NKTR;NKTR-RNF41|1|fusion;ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2355041503906	2	442.273638	882.532724	-0.22085	-9.7676E-05	3.4661	0.001533	3.2453	0.0014353	442.27551918402105	33.905	0.31166	33.905	33.739	34.05	0					10	7	2	0	0	0	0.027866	1	2495	2495		33.493	5.2387	1	93725			24012	3389	16495	16532	27889	27889					0.08675884490708086
HVVFGLVI	8	Unmodified	_HVVFGLVI_					0	0	0		ENSG00000114857|ENST00000232978|NKTR;NKTR-RNF41|1|fusion;ENST00000472127.1_1_3:42672642-42674322:+|nuORF	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2354431152344	2	442.273638	882.532724	-0.045227	-2.0003E-05	2.7932	0.0012353	2.7479	0.0012153	442.27554176078064	33.782	0.4027	33.838	33.693	34.096	0.056568					11	9	2	0	0	0	0.027866	1	2428	2428		24.504	10.729	1	89414			24013	3389	16495	16532	27890	27890					0.08675884490708086
HVVKGKQV	8	Unmodified	_HVVKGKQV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000478769.1_1_7:44465734-44467217:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.7615051269531	2	447.779619	893.544686	-0.54642	-0.00024467	-0.057785	-2.5875E-05	-0.6042	-0.00027055	447.7799553565329	33.087	0.23397	33.087	32.979	33.213	0					7	5	2	0	0	0	0.027866	1	2340	2340		13.775	6.085	1	21298			24014	935	16496	16533	27891	27891					0.09365501233901341
HVVNKYINVL	10	Unmodified	_HVVNKYINVL_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.2303771972656	3	400.236274	1197.68699	2.2578	0.00090365	3.5002	0.0014009	5.758	0.0023045	400.2376609139274	21.623	0.38311	21.694	21.546	21.929	0.071487					9	7	2	0	0	0	0.03519	1	667	667		7.0187	0	1	22986	+		24015	20831	16497	16534	27892	27892					0.09605669185430088
HVVSFVKV	8	Unmodified	_HVVSFVKV_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.2824401855469	2	457.776545	913.538538	0.05446	2.4931E-05	-4.0636	-0.0018602	-4.0091	-0.0018353	457.77444292326953	34.99	0.47584	34.774	34.548	35.024	-0.21555					19	11	2	0	0	0	0.027866	1	2593	2593		18.324	14.008	1	249890	+		24016	25074	16498	16535	27893	27893					0.07830983002384073
HVVTEAVTPL	10	Unmodified	_HVVTEAVTPL_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7813720703125	2	533.300581	1064.58661	0.11885	6.3382E-05	-0.65785	-0.00035083	-0.539	-0.00028745	533.2997099976263	59.477	0.3612	59.296	59.112	59.473	-0.18134					15	8	3	0	0	0	0.03519	1	6578	6578		35.618	12.576	1	167850			24017	5543	16499	16536	27894	27894					0.05690012131753974
HVVVYVRF	8	Unmodified	_HVVVYVRF_					0	0	0		ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2795715332031	2	509.795269	1017.57599	-0.59929	-0.00030552	-4.3379	-0.0022114	-4.9371	-0.0025169	510.29412761450595	35.331	0.1573	35.144	35.023	35.18	-0.18675					6	3	2	0	0	0	0.027866	1	2652	2652		37.028	29.338	1	34203			24018	15982	16500	16537	27895	27895					0.06790074267996715
HVVVYVRF	8	Unmodified	_HVVVYVRF_					0	0	0		ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.795269	1017.57599	-1.009	-0.00051438	-3.0567	-0.0015583	-4.0657	-0.0020727	509.79353917994825	35.551	0.50438	35.551	35.306	35.81	0	0.13768	0.0003341	NaN	37.028	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297350			24019	15982	16500	16537							0.06790074267996715
HVVVYVRF	8	Unmodified	_HVVVYVRF_					0	0	0		ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.795269	1017.57599	-1.127	-0.00057455	-0.71576	-0.00036489	-1.8428	-0.00093944	509.7951688314668	35.459	0.69544	35.438	35.122	35.817	-0.021763	0.023986	0.0027209	NaN	37.028	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225580			24020	15982	16500	16537							0.06790074267996715
HVVVYVRF	8	Unmodified	_HVVVYVRF_					0	0	0		ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	ENST00000520560.5_1_8:94749563-94753176:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.795269	1017.57599	-0.59605	-0.00030386	-3.7804	-0.0019272	-4.3764	-0.0022311	509.79334896932056	35.477	0.66903	35.521	35.229	35.898	0.044056	0.10742	-0.00040376	NaN	37.028	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259970			24021	15982	16500	16537							0.06790074267996715
HVWGLVLNR	9	Unmodified	_HVWGLVLNR_					0	0	0			REV__chr10:52454749-52454832|280|18.75|0.05|8.46|-|2|TE_info:L2a,L2a_dup105589,L2,LINE,donor,+,52454832,52455679|LNCAROD,None|26	REV__chr10:52454749-52454832|280|18.75|0.05|8.46|-|2|TE_info:L2a,L2a_dup105589,L2,LINE,donor,+,52454832,52455679|LNCAROD,None|26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.6617431640625	2	547.3169	1092.61925	1.8448	0.0010097	4.3585	0.0023855	6.2033	0.0033952	547.3190463221744	19.037	0.59373	18.803	18.483	19.077	-0.23345					24	11	4	0	0	0	0.024535	1	318	318		25.45	1.2474	1	157120	+		24022	19344	16501	16538	27896	27896					0.07664264045274649
HVYDTGLTSI	10	Unmodified	_HVYDTGLTSI_					0	0	0			REV__ENSG00000135423|ENST00000311966|GLS2	REV__ENSG00000135423|ENST00000311966|GLS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.7935791015625	2	553.279846	1104.54514	-0.30996	-0.0001715	4.3009	0.0023796	3.9909	0.0022081	553.2810545480984	66.438	0.15591	66.189	66.061	66.217	-0.24839					5	3	2	0	0	0	0.03519	1	7606	7606		21.96	0	1	50149	+		24023	23541	16502	16539	27897	27897					-0.0029516862757645868
HVYFLKRG	8	Unmodified	_HVYFLKRG_					0	0	0			REV__ENST00000532042.5_1_11:65479717-65480742:+|nuORF	REV__ENST00000532042.5_1_11:65479717-65480742:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26947021484375	2	510.292894	1018.57123	-0.81443	-0.0004156	-2.8408	-0.0014496	-3.6552	-0.0018652	510.29139420452543	26.629	0.47428	26.466	26.234	26.708	-0.16331					17	11	2	0	0	0	0.027866	1	1387	1387		9.4706	0	1	98091	+		24024	26727	16503	16540	27898	27898					0.06269190125237856
HVYPRVLD	8	Unmodified	_HVYPRVLD_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.27490234375	2	499.774534	997.534515	0.28122	0.00014055	2.2598	0.0011294	2.541	0.0012699	499.7756279151043	40.47	0.51377	40.358	39.904	40.418	-0.11222					25	13	2	0	0	0	0.027866	1	3543	3543		20.482	8.275	1	2967300	+		24025	22210	16504	16541	27899	27899					0.035648935086555866
HWILDENL	8	Unmodified	_HWILDENL_					0	0	0			REV__ENSG00000075407|ENST00000685332|ZNF37A	REV__ENSG00000075407|ENST00000685332|ZNF37A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.304931640625	2	520.263999	1038.51345	-0.35198	-0.00018312	0.74041	0.00038521	0.38844	0.00020209	520.2643200701423	93.653	0.21531	93.653	93.515	93.73	0					8	4	3	0	0	0	0.027866	1	11895	11895		85.359	30.583	1	37233	+		24026	20547	16505	16542	27900	27900					-0.0042711659086762666
HWILDEPN	8	Unmodified	_HWILDEPN_					0	0	0			REV__ENSG00000146085|ENST00000274813|MMUT	REV__ENSG00000146085|ENST00000274813|MMUT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2881774902344	2	512.248349	1022.48214	0.36825	0.00018864	-1.2547	-0.00064274	-0.8865	-0.00045411	512.2474507681122	71.958	0.14845	71.67	71.575	71.724	-0.28858					5	3	2	0	0	0	0.027866	1	8690	8690		31.955	0	1	327240	+		24027	24459	16506	16543	27901	27901					-0.028196896249596648
HWKQVSPL	8	Unmodified	_HWKQVSPL_					0	0	0			REV__ENST00000255641.12_1_19:1980677-1981289:+|nuORF	REV__ENST00000255641.12_1_19:1980677-1981289:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	497.7760925292969	2	497.777077	993.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.57	1	112.56	112.06	113.06	-0.014664								0	0	0	1.0904	1	14059	14059		14.664	2.4572	1		+		24028	29543	16507	16544	27902	27902					0.04257197371271104
HWLYDVLS	8	Unmodified	_HWLYDVLS_					0	0	0		ENSG00000099994|ENST00000358321|SUSD2;ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENSG00000099994|ENST00000358321|SUSD2	ENSG00000099994|ENST00000358321|SUSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.801025390625	2	516.761092	1031.50763	-0.74728	-0.00038617	-2.0068	-0.0010371	-2.7541	-0.0014232	516.7596841586712	36.826	0.2769	36.864	36.803	37.08	0.038044					10	6	2	0	0	0	0.027866	1	2894	2894		35.201	14.254	1	96983			24029	2111	16508	16545	27903	27903					-0.006862151025416097
HWNKKLQPY	9	Unmodified	_HWNKKLQPY_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	608.3111572265625	2	607.327465	1212.64038	0.12054	7.3207E-05	2.6533	0.0016114	2.7738	0.0016846	607.3290651941973	50.182	0.67324	50.002	49.717	50.39	-0.18071					38	17	3	0	0	0	0.024541	1	5045	5045		12.207	0	1	931410			24030	4071	16509	16546	27904	27904					0.042562293541323015
HWPPLLPF	8	Unmodified	_HWPPLLPF_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7802734375	2	503.779088	1005.54362	-0.671	-0.00033804	-0.23168	-0.00011671	-0.90268	-0.00045475	503.77873585412516	22.976	2.3026	23.05	21.256	23.559	0.073954					99	49	4	0	0	0	1.0241	2	762	762;799		33.493	0	1	711070			24031	14942	16510	16547	27905;27906	27905					0.041072868649848715
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.7681274414062	2	624.769645	1247.52474	-0.063732	-3.9818E-05	-3.7446	-0.0023395	-3.8083	-0.0023793	624.7670805993731	75.523	0.76124	75.25	74.976	75.737	-0.27266					46	18	3	0	0	0	0.43973	1	8927	8927		63.306	2.3343	1	835690	+		24032	19280	16511	16548	27907	27907					-0.08912339287371651
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	624.7670288085938	2	624.769645	1247.52474	0.18207	0.00011375	-3.9188	-0.0024484	-3.7367	-0.0023346	624.7670317064566	75.407	0.60362	75.232	74.943	75.547	-0.17548					36	14	3	0	0	0	0.22754	1	8909	8909		85.359	17.866	1	857350	+		24033	19280	16511	16548	27908	27908					-0.08912339287371651
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	624.769645	1247.52474	-1.0498	-0.00065587	-2.5693	-0.0016052	-3.6191	-0.0022611	624.7678491763443	75.164	0.53291	75.164	74.914	75.447	0	-0.074	0.00095633	NaN	85.359	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	664300	+		24034	19280	16511	16548							-0.08912339287371651
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	624.769645	1247.52474	0.0014643	9.1486E-07	-3.6181	-0.0022605	-3.6166	-0.0022595	624.7671525809228	75.489	0.51949	75.244	74.958	75.477	-0.24455	0.0067605	-0.00035412	NaN	85.359	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673950	+		24035	19280	16511	16548							-0.08912339287371651
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	624.769645	1247.52474	-0.35027	-0.00021884	-3.2134	-0.0020077	-3.5637	-0.0022265	624.767417807034	75.245	0.52663	75.255	75.012	75.539	0.010376	0.017619	0.00015148	NaN	85.359	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	703080	+		24036	19280	16511	16548							-0.08912339287371651
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	624.769645	1247.52474	-0.063732	-3.9818E-05	-3.7446	-0.0023395	-3.8083	-0.0023793	624.7670805993731	75.523	0.76124	75.25	74.976	75.737	-0.27266	0.012651	-0.00051221	NaN	85.359	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835690	+		24037	19280	16511	16548							-0.08912339287371651
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	624.769645	1247.52474	-1.1921	-0.00074477	-2.7375	-0.0017103	-3.9296	-0.0024551	624.7678097914226	75.539	0.83125	75.281	74.991	75.822	-0.25866	0.043112	0.00074614	NaN	85.359	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	815950	+		24038	19280	16511	16548							-0.08912339287371651
HWSFEEWDL	9	Unmodified	_HWSFEEWDL_					0	0	0			REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	REV__CDH20|p.R454W|1|0.5|ENSG00000101542|chr18:61536581-61536581|C/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	624.769645	1247.52474	0.18207	0.00011375	-3.9188	-0.0024484	-3.7367	-0.0023346	624.7670317064566	75.407	0.60362	75.232	74.943	75.547	-0.17548	-0.0061428	-0.00072991	NaN	85.359	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857350	+		24039	19280	16511	16548							-0.08912339287371651
HYAEISSQ	8	Unmodified	_HYAEISSQ_					0	0	0		nc|ENSG00000120458|Q6P1R3-2|MSANTD2;nc|ENSG00000120458|Q6P1R3-3|MSANTD2;ENSG00000120458|ENST00000374979|MSANTD2	nc|ENSG00000120458|Q6P1R3-2|MSANTD2	nc|ENSG00000120458|Q6P1R3-2|MSANTD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.738525390625	2	467.716882	933.41921	-0.11437	-5.3492E-05	-3.3759	-0.001579	-3.4903	-0.0016325	467.71523909939884	23.799	0.42873	23.619	23.395	23.824	-0.17989					13	9	2	0	0	0	0.027866	1	960	960		38.806	0	1	49828			24040	3817	16512	16549	27909	27909					-0.05016255412999726
HYAEISSQ	8	Unmodified	_HYAEISSQ_					0	0	0		nc|ENSG00000120458|Q6P1R3-2|MSANTD2;nc|ENSG00000120458|Q6P1R3-3|MSANTD2;ENSG00000120458|ENST00000374979|MSANTD2	nc|ENSG00000120458|Q6P1R3-2|MSANTD2	nc|ENSG00000120458|Q6P1R3-2|MSANTD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	467.716882	933.41921	1.6578	0.00077539	-5.8104	-0.0027176	-4.1525	-0.0019422	467.7142095934176	23.84	0.35209	23.652	23.444	23.796	-0.18858	0.016111	-0.00078585	NaN	38.806	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57493			24041	3817	16512	16549							-0.05016255412999726
HYEILKKY	8	Unmodified	_HYEILKKY_					0	0	0			REV__nc|ENSG00000163281|Q8TDQ7-3|GNPDA2	REV__nc|ENSG00000163281|Q8TDQ7-3|GNPDA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3038330078125	2	547.305667	1092.59678	-0.31394	-0.00017182	-2.8981	-0.0015861	-3.212	-0.001758	547.3036385442949	37.203	1.0057	36.994	36.685	37.691	-0.2092					78	25	5	0	0	0	0.95679	1	2962	2962		44.117	2.6902	1	3623500	+		24042	25547	16513	16550	27910	27910					0.05418619857005069
HYERCWKYYCL	11	Unmodified	_HYERCWKYYCL_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2730102539062	3	521.900568	1562.67988	-0.33382	-0.00017422	-0.24653	-0.00012866	-0.58035	-0.00030289	522.2347077526452	61.491	0.25092	61.233	61.091	61.342	-0.25725					8	5	2	0	0	0	0.024851	1	6881	6881		19.263	5.1767	1	80560			24043	10159;9837	16514	16551	27911	27911					-0.07895754748938089
HYGVLNKFNQM	11	Oxidation (M)	_HYGVLNKFNQM(Oxidation (M))_		HYGVLNKFNQM(1)		HYGVLNKFNQM(57)	0	0	1			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.2250061035156	3	456.223928	1365.64996	0.30872	0.00014085	2.2034	0.0010052	2.5121	0.0011461	456.22481736978557	51.762	0.69147	51.643	51.319	52.011	-0.11876					53	18	4	0	0	0	0.81748	1	5353	5353		56.632	9.6773	1	1989300	+		24044	25663	16515	16552	27912	27912		762			-0.018243704226506452
HYGVLNKFNQM	11	Oxidation (M)	_HYGVLNKFNQM(Oxidation (M))_					0	0	1			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	456.223928	1365.64996	0.30872	0.00014085	2.2034	0.0010052	2.5121	0.0011461	456.22481736978557	51.762	0.69147	51.643	51.319	52.011	-0.11876	-0.052199	-0.00084022	NaN	56.632	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1989300	+		24045	25663	16515	16552				762			-0.018243704226506452
HYGVLNKFNQM	11	Oxidation (M)	_HYGVLNKFNQM(Oxidation (M))_					0	0	1			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	456.223928	1365.64996	-2.1321	-0.00097271	4.5043	0.002055	2.3722	0.0010823	456.225888756424	52.061	0.76572	51.792	51.511	52.277	-0.26903	0.097058	0.0023089	NaN	56.632	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2413000	+		24046	25663	16515	16552				762			-0.018243704226506452
HYIRIHTL	8	Unmodified	_HYIRIHTL_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.287353515625	2	526.803626	1051.5927	-0.0075553	-3.9802E-06	-1.762	-0.00092823	-1.7696	-0.00093221	526.8017891243057	82.502	0.21706	82.321	82.157	82.374	-0.18079					6	4	2	0	0	0	0.027866	1	9951	9951		47.916	5.4411	1	28301			24047	728	16516	16553	27913	27913					0.06896575153928097
HYLKQSKVPL	10	Unmodified	_HYLKQSKVPL_					0	0	0		ENST00000450119.1_1_10:92814408-92814468:+|nuORF	ENST00000450119.1_1_10:92814408-92814468:+|nuORF	ENST00000450119.1_1_10:92814408-92814468:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.8998107910156	3	404.908157	1211.70264	0.7074	0.00028643	-2.3035	-0.00093272	-1.5961	-0.00064629	404.9071388844242	23.747	0.42275	23.545	23.279	23.702	-0.20193					15	9	2	0	0	0	0.03519	1	988	988		37.508	16.671	1	27836			24048	14509	16517	16554	27914	27914					0.10525955702473766
HYLLLRILRRK	11	Unmodified	_HYLLLRILRRK_					0	0	0			REV__nc|ENSG00000146833|Q9C037|TRIM4	REV__nc|ENSG00000146833|Q9C037|TRIM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28948974609375	3	494.324417	1479.95142	0.39227	0.00019391	0.17291	8.5476E-05	0.56519	0.00027939	494.32502959448664	61.661	0.53799	61.434	61.189	61.727	-0.22663					14	13	2	0	0	0	0.024834	1	7132	7132		17.833	0.6664	1	517460	+		24049	36759	16518	16555	27915	27915					0.23064343729811299
HYLPTTAR	8	Unmodified	_HYLPTTAR_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7353515625	2	479.758884	957.503215	-0.21169	-0.00010156	-0.021802	-1.046E-05	-0.23349	-0.00011202	479.75862615762367	60.251	0.56842	60.051	59.866	60.434	-0.20016					20	14	2	0	0	0	0.027866	1	6900	6900		29.15	0	1	208300	+		24050	22933	16519	16556	27916	27916					0.022763204745501753
HYMTNTAEY	9	Unmodified	_HYMTNTAEY_					0	0	0			REV__ENST00000438948.1_1_22:20287467-20300466:+|nuORF	REV__ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.769775390625	2	565.234581	1128.45461	-0.35521	-0.00020078	2.5837	0.0014604	2.2285	0.0012596	565.2358604435261	39.914	0.52522	39.765	39.553	40.078	-0.1497					22	13	2	0	0	0	0.024427	1	3401	3401		51.335	0	1	376700	+		24051	32498	16520	16557	27917	27917					-0.10447960947476531
HYPDAAYVR	9	Unmodified	_HYPDAAYVR_					0	0	0			REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1	REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2649536132812	2	546.267073	1090.51959	-0.91987	-0.0005025	-2.6752	-0.0014614	-3.595	-0.0019638	546.265642390416	26.228	1.6264	25.992	25.803	27.429	-0.23603					107	41	4	0	0	0	0.70186	1	1380	1380		45.952	6.6991	1	26288000	+		24052	36480	16521	16558	27918	27918					-0.022045983593443452
HYRYYVREMRI	11	Unmodified	_HYRYYVREMRI_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3334350585938	3	529.273393	1584.79835	-0.45019	-0.00023827	-0.33794	-0.00017886	-0.78812	-0.00041713	529.6075916999339	72.693	0.968	72.495	71.992	72.96	-0.1981					57	22	4	0	0	0	0.024888	1	8566	8566		9.6461	6.0271	1	982630			24053	7122	16522	16559	27919	27919					0.02934360551012105
HYVWRPAI	8	Unmodified	_HYVWRPAI_					0	0	0			REV__ENSG00000269433|ENST00000599405|OPN1MW3	REV__ENSG00000269433|ENST00000599405|OPN1MW3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7691040039062	2	521.285069	1040.55558	-0.037148	-1.9364E-05	-0.48518	-0.00025292	-0.52233	-0.00027228	521.7869454974422	55.752	0.38943	55.752	55.573	55.963	0					18	10	2	0	0	0	0.027866	1	6158	6158		50.025	2.065	1	366230	+		24054	21284	16523	16560	27920	27920					0.03692903608157394
IAAAHTFLLKH	11	Unmodified	_IAAAHTFLLKH_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.351318359375	2	611.358765	1220.70298	-0.79597	-0.00048662	-3.5905	-0.0021951	-4.3865	-0.0026817	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.0483	1	11692	11692		25.574	2.9944	1	4189200			24055	8019	16524	16561	27921	27921					0.10145375422303005
IAAARFSSL	9	Unmodified	_IAAARFSSL_					0	0	0			REV__nc|ENSG00000133110|Q15063-7|POSTN	REV__nc|ENSG00000133110|Q15063-7|POSTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2689514160156	2	468.269084	934.523616	-0.49776	-0.00023308	0.45073	0.00021106	-0.047028	-2.2022E-05	468.2692121975523	60.384	0.96597	60.384	60.104	61.07	0					58	25	4	0	0	0	0.40179	1	6964	6964		65.803	2.4969	1	4781900	+	+	24056	23351	16525	16562	27922	27922					0.05373491134378128
IAAEKRGS	8	Unmodified	_IAAEKRGS_					0	0	0		ENSG00000114739|ENST00000352511|ACVR2B;ENST00000465020.5_1_3:38519799-38524820:+|nuORF	ENSG00000114739|ENST00000352511|ACVR2B	ENSG00000114739|ENST00000352511|ACVR2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.23870849609375	2	416.237784	830.461016	0.80655	0.00033572	1.2699	0.0005286	2.0765	0.00086432	416.2381732103569	19.622	1.1958	19.622	19.366	20.562	0					58	24	3	0	0	0	0.87148	1	440	440		53.351	2.016	1	442860			24057	3379	16526	16563	27923	27923					0.03900345066188038
IAAELARNL	9	Unmodified	_IAAELARNL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7677917480469	2	485.787641	969.56073	-0.16413	-7.9734E-05	-0.66614	-0.0003236	-0.83028	-0.00040334	485.7873435397639	47.002	1.6887	47.002	46.09	47.779	0					121	47	5	0	0	0	0.022411	1	4661	4661		51.193	1.6567	1	8122600			24058	1293	16527	16564	27924	27924					0.07473162680128098
IAAGGRPIL	9	Unmodified	_IAAGGRPIL_					0	0	0		LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|22|3|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|22|3|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|22|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.27435302734375	2	434.27417	866.533787	0.049146	2.1343E-05	-0.263	-0.00011421	-0.21385	-9.2869E-05	434.274048688637	54.85	1.3662	54.619	54.181	55.547	-0.23087					78	38	4	0	0	0	0.30842	1	5859	5859		74.517	8.6191	1	9281500			24059	17936	16528	16565	27925	27925					0.09518098859598467
IAAGGRPIL	9	Unmodified	_IAAGGRPIL_					0	0	0		LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|22|3|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|22|3|sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|22|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.274169921875	2	434.27417	866.533787	1.2122	0.00052642	-1.3311	-0.00057805	-0.11889	-5.1633E-05	434.2735899978598	54.796	1.4449	54.59	54.237	55.682	-0.20613					73	39	4	0	0	0	0.40036	1	5841	5841		65.897	0	1	9428800			24060	17936	16528	16565	27926	27926					0.09518098859598467
IAAIIVSQW	9	Unmodified	_IAAIIVSQW_					0	0	0		ENSG00000006831|ENST00000357103|ADIPOR2	ENSG00000006831|ENST00000357103|ADIPOR2	ENSG00000006831|ENST00000357103|ADIPOR2	MSMS	OPSCC_40_ClassI_Rep-1	4	500.7948303222656	2	500.794935	999.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.743	1	82.523	82.023	83.023	-0.22015								0	0	0	0.39148	1	9963	9963		62.107	12.571	1				24061	803	16529	16566	27927	27927					0.07551234828281395
IAAIVVAVI	9	Unmodified	_IAAIVVAVI_					0	0	0		ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENSG00000110651|ENST00000263645|CD81;ENST00000531840.1_1_11:2417722-2418004:+|nuORF;ENST00000481386.1_1_11:2417722-2418093:+|nuORF	ENST00000468153.1_1_11:2416081-2418093:+|nuORF	ENST00000468153.1_1_11:2416081-2418093:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801208496094	2	434.796946	867.57934	-0.59311	-0.00025788	0.54224	0.00023577	-0.050864	-2.2115E-05	434.7972884979528	38.281	0.29848	38.199	38.116	38.414	-0.082516					11	7	2	0	0	0	0.023868	1	3218	3218		21.702	7.0382	1	97221			24062	3052	16530	16567	27928	27928					0.14025324321983135
IAAKNPKIA	9	Unmodified	_IAAKNPKIA_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.2947082519531	2	463.295102	924.575651	-0.66685	-0.00030895	0.10666	4.9413E-05	-0.5602	-0.00025954	463.29505731713635	48.375	0.99148	48.277	47.966	48.958	-0.097549					80	26	5	0	0	0	0.55828	1	4832	4832		55.504	13.108	1	9029400			24063	3129	16531	16568	27929	27929					0.11034654548132039
IAALASQLVK	10	Unmodified	_IAALASQLVK_					0	0	0			REV__ENSG00000143621|ENST00000361891|ILF2	REV__ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2926025390625	2	507.321317	1012.62808	-0.99701	-0.0005058	0.51144	0.00025946	-0.48557	-0.00024634	507.3214301736734	51.749	0.57728	51.836	51.577	52.155	0.087006					31	14	3	0	0	0	0.03519	1	5466	5466		31.955	2.8053	1	421250	+		24064	24266	16532	16569	27930	27930					0.12227192891100458
IAALEVLEEE	10	Unmodified	_IAALEVLEEE_					0	0	0		nc|ENSG00000065154|P04181-2|OAT;ENSG00000065154|ENST00000368845|OAT	nc|ENSG00000065154|P04181-2|OAT	nc|ENSG00000065154|P04181-2|OAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.29345703125	2	558.295162	1114.57577	-0.17338	-9.6797E-05	-2.7909	-0.0015582	-2.9643	-0.001655	558.2935119169247	26.467	0.91007	26.467	26.124	27.034	0					70	21	5	0	0	0	0.82838	1	1347	1347		58.782	7.4465	1	3011300			24065	1294	16533	16570	27931	27931					0.023065649668296828
IAALPGAAKL	10	Unmodified	_IAALPGAAKL_					0	0	0		ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7975158691406	2	462.797478	923.580402	0.45891	0.00021238	-0.40123	-0.00018569	0.057676	2.6692E-05	462.79726538143274	58.611	1.1633	58.611	58.056	59.22	0					73	31	4	0	0	0	0.72219	1	6639	6639		65.803	2.4969	1	6820600			24066	10507	16534	16571	27932	27932					0.11555538690890899
IAALPGAAKL	10	Unmodified	_IAALPGAAKL_					0	0	0		ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7977600097656	2	462.797478	923.580402	1.0133	0.00046895	-0.88308	-0.00040869	0.13022	6.0264E-05	462.7970051402702	58.898	1.0561	58.711	58.275	59.331	-0.18705					66	28	4	0	0	0	0.65054	1	6660	6660		71.296	2.5089	1	6423900			24067	10507	16534	16571	27933	27933					0.11555538690890899
IAALQAPPAA	10	Unmodified	_IAALQAPPAA_					0	0	0			REV__ARSA|p.G475Afs*38|1|0.22|ENSG00000100299|chr22:50625230-50625251|CCCCGGGCCACCTGGCTGGGGC/-|frameshift_variant	REV__ARSA|p.G475Afs*38|1|0.22|ENSG00000100299|chr22:50625230-50625251|CCCCGGGCCACCTGGCTGGGGC/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	461.7730712890625	2	461.77146	921.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.341	1	98.205	97.705	98.705	-0.13625								0	0	0	0.74558	1	12173	12173		31.955	7.7521	1		+		24068	19172	16535	16572	27934	27934					0.06446375277118932
IAALRIVGG	9	Unmodified	_IAALRIVGG_					0	0	0			REV__ENST00000575643.1_1_17:4701246-4701714:+|nuORF	REV__ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.28662109375	2	435.281995	868.549437	-0.52886	-0.00023021	-1.5058	-0.00065546	-2.0347	-0.00088566	435.28114646646765	51.87	0.51022	51.962	51.649	52.16	0.091938					18	13	2	0	0	0	0.024466	1	5479	5479		33.516	3.674	1	93822	+		24069	24157	16536	16573	27935	27935					0.10990385376658196
IAALSERTF	9	Unmodified	_IAALSERTF_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A;REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2596130371094	2	504.279649	1006.54475	0.082893	4.1801E-05	-3.2055	-0.0016165	-3.1226	-0.0015747	504.27782840161444	22.471	0.3692	22.269	22.146	22.515	-0.20198					18	7	3	0	0	0	0.024381	1	802	802		55.504	0	1	131720	+		24070	24322;19859;27620	16537	16574	27936	27936					0.041734564432204024
IAALWLSPQ	9	Unmodified	_IAALWLSPQ_					0	0	0		ENST00000559229.1_1_14:24633283-24633990:+|nuORF;IRF9|p.P26Qfs*240|1|0.24|ENSG00000213928|chr14:24162220-24162241|CCCGGAGTGTGCTGGGATGATA/-|frameshift_variant	ENST00000559229.1_1_14:24633283-24633990:+|nuORF	ENST00000559229.1_1_14:24633283-24633990:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.28326416015625	2	499.78711	997.559667	-0.53847	-0.00026912	-3.7525	-0.0018755	-4.291	-0.0021446	499.7851760140953	37.458	0.73827	37.395	37.163	37.902	-0.063389					31	20	3	0	0	0	0.024487	1	3089	3089		24.203	0	1	739800			24071	16773	16538	16575	27937	27937					0.06078948311221666
IAANEENRKW	10	Unmodified	_IAANEENRKW_					0	0	0		ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.8792724609375	3	410.879038	1229.61528	0.057787	2.3744E-05	0.024383	1.0018E-05	0.08217	3.3762E-05	410.8790491756631	31.668	1.0136	31.427	31.112	32.126	-0.24109					72	24	4	0	0	0	0.52143	4	2135	2113;2123;2135;2149		85.862	23.18	1	5993200			24072	4503	16539	16576	27938;27939;27940;27941	27940					0.009661297608772657
IAANEENRKW	10	Unmodified	_IAANEENRKW_					0	0	0		ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.8793029785156	3	410.879038	1229.61528	0.058386	2.3989E-05	-0.022037	-9.0546E-06	0.036348	1.4935E-05	410.8790423343414	31.586	1.3162	31.401	30.984	32.3	-0.18503					95	31	4	0	0	0	0.34816	5	2115	2095;2104;2115;2127;2141		104.01	45.767	1	4459100			24073	4503	16539	16576	27942;27943;27944;27945;27946	27944					0.009661297608772657
IAANEENRKW	10	Unmodified	_IAANEENRKW_					0	0	0		ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.87933349609375	3	410.879038	1229.61528	-0.34582	-0.00014209	0.4349	0.00017869	0.089078	3.66E-05	410.87921896138295	31.585	1.1257	31.433	31.124	32.25	-0.15231					79	27	4	0	0	0	0.47897	3	2087	2087;2098;2109		90.601	26.907	1	5247300			24074	4503	16539	16576	27947;27948;27949	27947					0.009661297608772657
IAAPKPDLI	9	Unmodified	_IAAPKPDLI_					0	0	0		ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	ENSG00000269067|ENST00000594710|ZNF728	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	469.2881164550781	2	469.289485	936.564418	-0.7154	-0.00033573	0.46546	0.00021843	-0.24994	-0.0001173	469.2895027309017	48.633	0.88276	48.533	48.147	49.029	-0.1008					59	23	4	0	0	0	0.33245	1	4838	4838		71.296	5.3982	1	2762200			24075	10993	16540	16577	27950	27950					0.09359832453992567
IAAQQLGI	8	Unmodified	_IAAQQLGI_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1;ENST00000472857.1_1_3:15642575-15642994:-|nuORF;ENST00000460907.1_1_3:15637889-15642994:-|nuORF	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.8875732421875	2	407.245078	812.475603	0.18669	7.6027E-05	-0.038349	-1.5618E-05	0.14834	6.0409E-05	407.2447853774697	33.522	0.61851	33.322	32.937	33.555	-0.20019					22	15	2	0	0	0	0.027866	1	2422	2422		52.299	0	1	121750			24076	4512	16541	16578	27951	27951					0.06186417214314588
IAAQRRLP	8	Unmodified	_IAAQRRLP_					0	0	0			REV__ENSG00000006283|ENST00000359106|CACNA1G	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7903747558594	2	462.790518	923.566484	1.9647	0.00090923	-1.8817	-0.00087082	0.082989	3.8406E-05	462.7894844533639	20.272	0.97662	20.341	19.832	20.808	0.068901					44	19	4	0	0	0	1.0133	1	468	468		35.201	1.6851	1	334120	+		24077	19828	16542	16579	27952	27952					0.1016430598245961
IAAQRTINW	9	Unmodified	_IAAQRTINW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7993774414062	2	536.79854	1071.58253	-0.08783	-4.7147E-05	0.039579	2.1246E-05	-0.04825	-2.5901E-05	536.7983956655776	49.98	1.0447	49.874	49.599	50.644	-0.10558					55	27	3	0	0	0	0.30449	3	5047	5047;5057;5069		75.043	17.808	1	3721800			24078	4246	16543	16580	27953;27954;27955	27953					0.04959967428703749
IAAQRTINW	9	Unmodified	_IAAQRTINW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.7988891601562	2	536.79854	1071.58253	-0.29862	-0.0001603	0.22126	0.00011877	-0.077353	-4.1523E-05	536.79856410697	50.269	1.4543	49.989	49.547	51.001	-0.27977					73	38	3	0	0	0	0.17845	2	5086	5077;5086		93.143	36.422	1	3895700			24079	4246	16543	16580	27956;27957	27957					0.04959967428703749
IAAQRTINW	9	Unmodified	_IAAQRTINW_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.7991333007812	2	536.79854	1071.58253	-0.23614	-0.00012676	0.29338	0.00015749	0.057237	3.0725E-05	536.7985671071203	50.1	0.67307	49.919	49.644	50.317	-0.18071					42	17	3	0	0	0	0.16638	3	5068	5058;5068;5080		95.815	31.608	1	3987500			24080	4246	16543	16580	27958;27959;27960	27959					0.04959967428703749
IAAQTGTRW	9	Unmodified	_IAAQTGTRW_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENSG00000198258|ENST00000586895|UBL5;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2699279785156	2	502.269616	1002.52468	-0.17017	-8.5473E-05	0.14583	7.3244E-05	-0.024346	-1.2228E-05	502.2697963293127	39.698	0.6533	39.548	39.242	39.896	-0.1497					35	16	3	0	0	0	0.048057	2	3377	3377;3398		129.42	28.169	1	2194400			24081	10114	16544	16581	27961;27962	27961					0.02351705503269841
IAAQTGTRW	9	Unmodified	_IAAQTGTRW_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENSG00000198258|ENST00000586895|UBL5;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.27032470703125	2	502.269616	1002.52468	-0.38528	-0.00019352	0.65777	0.00033038	0.27249	0.00013686	502.26995841881296	39.833	0.81395	39.608	39.3	40.114	-0.225					39	20	4	0	0	0	0.043667	3	3394	3385;3394;3408		131.03	37.025	1	2260900			24082	10114	16544	16581	27963;27964;27965	27964					0.02351705503269841
IAAQTGTRW	9	Unmodified	_IAAQTGTRW_					0	0	0		ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENSG00000198258|ENST00000586895|UBL5;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	ENST00000589372.1_1_19:9939013-9939570:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2699890136719	2	502.269616	1002.52468	-0.45963	-0.00023086	0.71182	0.00035752	0.25219	0.00012667	502.2699698304922	39.786	0.88287	39.556	39.237	40.12	-0.23021					37	20	3	0	0	0	0.041068	3	3373	3373;3382;3397		132.76	45.004	1	2463500			24083	10114	16544	16581	27966;27967;27968	27966					0.02351705503269841
IAASYDKTV	9	Unmodified	_IAASYDKTV_					0	0	0		nc|ENSG00000166359|Q6ZMY6-2|WDR88;ENSG00000166359|ENST00000355868|WDR88	nc|ENSG00000166359|Q6ZMY6-2|WDR88	nc|ENSG00000166359|Q6ZMY6-2|WDR88	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.2585144042969	2	484.258382	966.502212	-0.62246	-0.00030143	-0.603	-0.00029201	-1.2255	-0.00059344	484.2579896725806	28.191	1.0713	27.946	27.506	28.578	-0.24524					73	25	4	0	0	0	0.25032	1	1622	1622		82.305	8.3303	1	1459200			24084	7547	16545	16582	27969	27969					0.017620613150029385
IAATKSGR	8	Unmodified	_IAATKSGR_					0	0	0			REV__ENST00000225726.9_1_17:61843531-61850919:-|nuORF	REV__ENST00000225726.9_1_17:61843531-61850919:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.72210693359375	2	402.240327	802.466101	1.4735	0.00059271	3.6767	0.0014789	5.1502	0.0020716	402.2416212044588	26.977	0.74897	27.058	26.714	27.463	0.081291					32	19	2	0	0	0	0.027866	1	1356	1356		21.96	4.5949	1	113310	+		24085	29375	16546	16583	27970	27970					0.05696648928801551
IAAVIARFY	9	Unmodified	_IAAVIARFY_					0	0	0		nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-4|IFI27	nc|ENSG00000165949|P40305-4|IFI27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.3027954101562	2	512.302927	1022.5913	-0.67601	-0.00034632	0.27204	0.00013936	-0.40397	-0.00020696	512.3029160957254	66.401	0.57525	66.177	65.864	66.439	-0.22374					43	14	4	0	0	0	0.040175	1	7616	7616		133.47	50.182	1	1353600			24086	7489	16547	16584	27971	27971					0.08090941065177049
IAAVIARFY	9	Unmodified	_IAAVIARFY_					0	0	0		nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-4|IFI27	nc|ENSG00000165949|P40305-4|IFI27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.302734375	2	512.302927	1022.5913	-0.46259	-0.00023699	0.1241	6.3575E-05	-0.33849	-0.00017341	512.302876493633	66.402	0.57094	66.156	65.851	66.422	-0.24517					45	14	4	0	0	0	0.074956	1	7597	7597		119.56	48.179	1	1271100			24087	7489	16547	16584	27972	27972					0.08090941065177049
IACVSCYDSV	10	Carbamidomethyl (C)	_IACVSC(Carbamidomethyl (C))YDSV_	IAC(0.159)VSC(0.841)YDSV		IAC(-7.2)VSC(7.2)YDSV		0	1	0			REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	REV__ENST00000391942.6_1_19:45854889-45865127:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.7382202148438	2	558.738642	1115.46273	-0.21898	-0.00012235	0.3442	0.00019232	0.12522	6.9965E-05	558.7386104541824	61.233	0.77957	61.027	60.772	61.551	-0.20599					49	18	4	0	0	0	0.941	1	6854	6854		51.335	7.2187	2	1825800	+		24088	31589	16548	16585	27973	27973	417				-0.09038150022411173
IADLLQSNL	9	Unmodified	_IADLLQSNL_					0	0	0			REV__ENST00000550197.1_1_12:120512327-120527926:+|nuORF	REV__ENST00000550197.1_1_12:120512327-120527926:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.77911376953125	2	493.779482	985.544411	0.35657	0.00017607	-0.7834	-0.00038683	-0.42682	-0.00021076	493.77909835366734	57.628	0.75612	57.453	56.999	57.755	-0.1749					59	19	4	0	0	0	0.2101	1	6428	6428		87.696	2.5356	1	12143000	+		24089	23517	16549	16586	27974	27974					0.05106036723384477
IADLWNSPT	9	Unmodified	_IADLWNSPT_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23;nc|ENSG00000107736|Q9H251-11|CDH23;nc|ENSG00000107736|Q9H251-10|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.75238037109375	2	508.756007	1015.49746	-0.89617	-0.00045593	-2.94	-0.0014957	-3.8362	-0.0019517	508.75441476609154	43.697	0.71623	43.552	43.241	43.958	-0.14471					45	19	3	0	0	0	0.45795	1	4084	4084		62.107	1.9892	1	3594900			24090	18160	16550	16587	27975	27975					-0.00966822827751912
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_		IADM(1)GHLKY		IADM(110)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.26611328125	2	532.265684	1062.51682	-0.25594	-0.00013623	0.33788	0.00017984	0.081942	4.3615E-05	532.2656168525594	33.806	0.97748	33.582	33.321	34.299	-0.22412					68	24	4	0	0	0	0.10174	3	2456	2444;2456;2473		110.12	41.333	1	1615600			24091	4632	16551	16588	27976;27977;27978	27977		183			-0.011941898085069624
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_		IADM(1)GHLKY		IADM(99)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.265869140625	2	532.265684	1062.51682	-0.74265	-0.00039529	-1.9627	-0.0010447	-2.7053	-0.00144	532.2658465118227	33.893	1.0465	33.693	33.286	34.332	-0.20019					76	26	5	0	0	0	0.15366	2	2435	2435;2448		98.629	35.651	1	1784800			24092	4632	16551	16588	27979;27980	27979		183			-0.011941898085069624
IADMGHLKY	9	Oxidation (M)	_IADM(Oxidation (M))GHLKY_		IADM(1)GHLKY		IADM(110)GHLKY	0	0	1		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2659301757812	2	532.265684	1062.51682	-1.4706	-0.00078274	1.3212	0.00070324	-0.14936	-7.9501E-05	532.2661557314689	33.743	0.58549	33.568	33.311	33.896	-0.17557					39	14	4	0	0	0	0.10174	2	2413	2413;2423		110.12	47.141	1	1753700			24093	4632	16551	16588	27981;27982	27981		183			-0.011941898085069624
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2678833007812	2	524.268227	1046.5219	-0.5183	-0.00027173	-0.078292	-4.1046E-05	-0.5966	-0.00031278	524.2680456375914	43.453	0.81042	43.34	43.071	43.881	-0.11253					67	21	4	0	0	0	0.077175	4	3994	3974;3983;3994;4008		118.74	54.536	1	6769100			24094	4632	16551	16589	27983;27984;27985;27986	27985					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.267822265625	2	524.268227	1046.5219	-0.72198	-0.00037851	-0.22989	-0.00012053	-0.95188	-0.00049904	524.2679661102642	43.639	0.88288	43.402	43.099	43.982	-0.23736					76	23	5	0	0	0	0.10174	3	4005	3994;4005;4018		110.12	48.226	1	7773900			24095	4632	16551	16589	27987;27988;27989	27988					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.26806640625	2	524.268227	1046.5219	-0.82018	-0.00043	-0.18242	-9.5637E-05	-1.0026	-0.00052563	524.2679864021896	43.675	0.93155	43.456	43.176	44.108	-0.21938					74	25	5	0	0	0	0.067814	4	4013	3991;4002;4013;4026		122.18	53.656	1	7492800			24096	4632	16551	16589	27990;27991;27992;27993	27992					0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	524.268227	1046.5219	-1.2799	-0.00067101	0.95348	0.00049988	-0.32642	-0.00017113	524.2686289720119	43.265	1.8458	43.265	42.605	44.451	0	-0.082953	0.00089858	NaN	122.18	121	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5911000			24097	4632	16551	16589							0.000501140541246059
IADMGHLKY	9	Unmodified	_IADMGHLKY_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	524.268227	1046.5219	-0.74756	-0.00039192	0.54525	0.00028586	-0.20231	-0.00010607	524.2683926023352	43.421	1.5298	43.282	42.702	44.232	-0.13929	-0.065959	0.00047052	NaN	122.18	124	42	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5948400			24098	4632	16551	16589							0.000501140541246059
IADMPTDET	9	Unmodified	_IADMPTDET_					0	0	0			REV__ENSG00000154305|ENST00000344922|MIA3	REV__ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7183532714844	2	496.71569	991.416827	-0.436	-0.00021657	4.4638	0.0022172	4.0278	0.0020007	496.71801832498005	28.13	1.4206	28.13	27.653	29.073	0					92	34	5	0	0	0	0.70186	1	1592	1592		45.952	1.4209	1	4488400	+		24099	24953	16552	16590	27994	27994					-0.07922471932965891
IADVYTVVL	9	Unmodified	_IADVYTVVL_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2656555175781	2	496.786776	991.558998	0.15417	7.6592E-05	-1.0412	-0.00051727	-0.88706	-0.00044068	496.7853720589703	37.136	0.61838	37.073	36.904	37.522	-0.063385					25	16	2	0	0	0	0.024262	1	3050	3050		47.916	10.756	1	161770	+		24100	25472	16553	16591	27995	27995					0.062881088715244
IAEDPAPLR	9	Unmodified	_IAEDPAPLR_					0	0	0			REV__ENSG00000068976|ENST00000164139|PYGM	REV__ENSG00000068976|ENST00000164139|PYGM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.29547119140625	2	491.271824	980.529095	0.038006	1.8671E-05	3.7631	0.0018487	3.8011	0.0018674	491.2735596624958	56.076	1.0333	56.076	55.61	56.643	0					70	28	3	0	0	0	0.024381	1	6326	6326		21.96	0	1	3336600	+		24101	20393	16554	16592	27996	27996					0.038051699261814065
IAEDPVDIL	9	Unmodified	_IAEDPVDIL_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7655334472656	2	492.76604	983.517527	0.56309	0.00027747	0.67355	0.0003319	1.2366	0.00060937	492.76638240520754	77.907	2.5764	77.696	77.08	79.656	-0.21087					157	61	4	0	0	0	0.33245	1	9604	9604		71.296	0	1	4408300			24102	5347	16555	16593	27997	27997					0.02510928112201327
IAEEMIEHDYQ	11	Unmodified	_IAEEMIEHDYQ_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7740783691406	3	459.87122	1376.59183	-0.66545	-0.00030602	1.2255	0.00056355	0.56	0.00025753	459.87170388289906	23.723	0.51682	23.663	23.47	23.987	-0.060862					18	11	2	0	0	0	0.024789	1	993	993		21.032	7.5243	1	74359	+		24103	36978	16556	16594	27998	27998					-0.08140096858573997
IAEEMIEHDYQ	11	Unmodified	_IAEEMIEHDYQ_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	459.87122	1376.59183	-0.23882	-0.00010982	0.895	0.00041158	0.65618	0.00030176	459.87156627058306	23.765	0.3851	23.765	23.566	23.951	0	0.062962	-0.00017223	NaN	21.032	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64019	+		24104	36978	16556	16594							-0.08140096858573997
IAEEMIEHDYQ	11	Unmodified	_IAEEMIEHDYQ_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	459.87122	1376.59183	0.18769	8.6315E-05	0.63341	0.00029129	0.82111	0.0003776	459.8714160793341	23.601	0.4799	23.678	23.476	23.956	0.076241	-0.023984	-0.00053311	NaN	21.032	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69544	+		24105	36978	16556	16594							-0.08140096858573997
IAEHLNVDQSI	11	Unmodified	_IAEHLNVDQSI_					0	0	0			REV__ENSG00000050344|ENST00000056233|NFE2L3	REV__ENSG00000050344|ENST00000056233|NFE2L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.5504455566406	3	413.550698	1237.63027	-0.49749	-0.00020574	-0.11395	-4.7124E-05	-0.61144	-0.00025286	413.550692351935	29.631	1.5607	29.631	29.073	30.634	0					57	38	2	0	0	0	0.92638	1	1842	1842		50.034	8.9534	1	5348700	+		24106	20157	16557	16595	27999	27999					0.020955768382464157
IAEISTACTY	10	Unmodified	_IAEISTACTY_					0	0	0		ENSG00000172164|ENST00000517992|SNTB1	ENSG00000172164|ENST00000517992|SNTB1	ENSG00000172164|ENST00000517992|SNTB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.766845703125	2	536.254982	1070.49541	0.0035211	1.8882E-06	1.3101	0.00070257	1.3137	0.00070446	536.2555273813325	37.102	0.46983	36.892	36.605	37.075	-0.2092					17	11	2	0	0	0	0.03519	1	2932	2932		53.351	0	1	148150			24107	8248	16558	16596	28000	28000					-0.03701619627895525
IAELCSQYY	9	Unmodified	_IAELCSQYY_					0	0	0			REV__ENSG00000155876|ENST00000380527|RRAGA	REV__ENSG00000155876|ENST00000380527|RRAGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8173828125	2	545.2497	1088.48485	0.32674	0.00017815	2.2305	0.0012162	2.5572	0.0013943	545.2505422193283	67.47	0.50758	67.215	67.153	67.661	-0.25516					18	11	3	0	0	0	0.024397	1	7800	7800		56.721	21.52	1	619550	+		24108	20721	16559	16597	28001	28001					-0.055856022823036255
IAELCSQYY	9	Unmodified	_IAELCSQYY_					0	0	0			REV__ENSG00000155876|ENST00000380527|RRAGA	REV__ENSG00000155876|ENST00000380527|RRAGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8162841796875	2	545.2497	1088.48485	-0.29261	-0.00015955	3.8962	0.0021244	3.6036	0.0019649	545.2509561401262	67.473	0.66196	67.239	67.175	67.837	-0.23376					24	15	3	0	0	0	0.024288	1	7769	7769		52.937	23.787	1	706270	+		24109	20721	16559	16597	28002	28002					-0.055856022823036255
IAELQDGLL	9	Unmodified	_IAELQDGLL_					0	0	0		ENST00000361716.7_1_12:6572127-6572325:-|nuORF	ENST00000361716.7_1_12:6572127-6572325:-|nuORF	ENST00000361716.7_1_12:6572127-6572325:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.8056945800781	2	486.274032	970.533512	-0.2373	-0.00011539	2.1351	0.0010383	1.8978	0.00092287	486.27465776140025	34.673	0.71946	34.49	34.082	34.801	-0.18321					24	17	2	0	0	0	0.024025	1	2599	2599		62.107	1.9892	1	196740			24110	12804	16560	16598	28003	28003					0.0470663434908829
IAELQREP	8	Unmodified	_IAELQREP_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.30029296875	2	478.263999	954.513445	-0.71791	-0.00034335	1.8505	0.00088503	1.1326	0.00054168	478.2645852011205	37.94	0.53363	37.94	37.632	38.166	0					29	15	3	0	0	0	0.027866	1	3114	3114		115.46	22.264	1	170430			24111	1051	16561	16599	28004	28004					0.03436883409131042
IAEQSFFGPF	10	Unmodified	_IAEQSFFGPF_					0	0	0			REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|88	REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|88	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.7282104492188	2	571.779482	1141.54441	0.31373	0.00017939	-4.2875	-0.0024515	-3.9737	-0.0022721	572.2783528230544	51.921	0.55135	51.737	51.561	52.112	-0.18405					21	14	3	0	0	0	0.03519	1	5328	5328		76.774	12.567	1	132240	+		24112	19329	16562	16600	28005	28005					-0.020699632766081777
IAERSHCL	8	Unmodified	_IAERSHCL_					0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2681579589844	2	464.737094	927.459635	-0.086353	-4.0131E-05	2.4587	0.0011426	2.3723	0.0011025	464.7366940839712	42.275	0.13412	42.143	42.082	42.216	-0.1322					5	3	2	0	0	0	0.027866	1	3856	3856		40.573	0	1	31846	+		24113	25078	16563	16601	28006	28006					-0.006996122942268812
IAESLSRPKV	10	Unmodified	_IAESLSRPKV_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.324951171875	2	550.327131	1098.63971	-0.021848	-1.2023E-05	0.9288	0.00051114	0.90695	0.00049912	550.3277998075141	98.945	1.0124	98.945	98.479	99.492	0					46	22	3	0	0	0	1.1307	1	12695	12695		26.693	1.1189	1	260500	+		24114	19892	16564	16602	28007	28007					0.09433389914420331
IAEVLPLAE	9	Unmodified	_IAEVLPLAE_					0	0	0			REV__nc|ENSG00000105732|Q6ZN55-2|ZNF574	REV__nc|ENSG00000105732|Q6ZN55-2|ZNF574	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.777587890625	2	477.778951	953.543348	-0.86432	-0.00041295	-2.8242	-0.0013494	-3.6886	-0.0017623	477.77780002341314	27.145	2.5781	27.226	26.29	28.868	0.081293					199	64	5	0	0	0	0.55828	1	1402	1402		55.504	2.1528	1	98548000	+		24115	36544	16565	16603	28008	28008					0.06471822354478718
IAFAQLVGAT	10	Unmodified	_IAFAQLVGAT_					0	0	0			REV__SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	REV__SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2513427734375	2	495.784567	989.554582	-0.0055454	-2.7493E-06	-2.8641	-0.00142	-2.8697	-0.0014227	495.78473646351836	61.069	0.6442	61.14	60.79	61.434	0.071125					31	16	3	0	0	0	0.03519	1	6971	6971		35.618	15.622	1	738740	+		24116	23992	16566	16604	28009	28009					0.05938644448622199
IAFAVNHFW	9	Unmodified	_IAFAVNHFW_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.7852783203125	2	552.784902	1103.55525	-0.53141	-0.00029376	0.33496	0.00018516	-0.19645	-0.00010859	552.7850269574922	76.071	1.5375	75.798	75.384	76.922	-0.27267					108	37	5	0	0	0	0.008962	5	9014	8991;9002;9014;9028;9040		238.83	133.56	1	8802700			24117	6928	16567	16605	28010;28011;28012;28013;28014	28012					0.00761483888300063
IAFAVNHFW	9	Unmodified	_IAFAVNHFW_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.7849731445312	2	552.784902	1103.55525	-0.13676	-7.5597E-05	0.032129	1.7761E-05	-0.10463	-5.7837E-05	552.784855043661	76.023	1.4186	75.765	75.438	76.856	-0.25865					98	34	4	0	0	0	0.0146	4	9042	9007;9019;9031;9042		217.6	125.41	1	8588700			24118	6928	16567	16605	28015;28016;28017;28018	28018					0.00761483888300063
IAFAVNHFW	9	Unmodified	_IAFAVNHFW_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.784912109375	2	552.784902	1103.55525	-0.0055506	-3.0683E-06	-0.23373	-0.0001292	-0.23928	-0.00013227	552.784712037236	75.851	1.5786	75.676	75.273	76.852	-0.17548					101	38	4	0	0	0	0.013834	4	8987	8964;8974;8987;9000		217.6	125.41	1	8851800			24119	6928	16567	16605	28019;28020;28021;28022	28021					0.00761483888300063
IAFGFLGGL	9	Unmodified	_IAFGFLGGL_					0	0	0			REV__nc|ENSG00000181830|Q96A29-2|SLC35C1	REV__nc|ENSG00000181830|Q96A29-2|SLC35C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.7555236816406	2	447.757821	893.501089	-0.25824	-0.00011563	-4.0763	-0.0018252	-4.3345	-0.0019408	447.7558563143275	57.088	0.62451	57.183	56.878	57.503	0.095306					46	16	4	0	0	0	0.65391	1	6337	6337		49.211	6.8147	1	3498200	+		24120	27432	16568	16606	28023	28023					0.05007891736772763
IAFGSAHLY	9	Unmodified	_IAFGSAHLY_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2699279785156	2	489.75581	977.497067	0.573	0.00028063	0.19403	9.5029E-05	0.76703	0.00037566	489.75555750072436	59.341	0.48412	59.159	58.911	59.395	-0.18134					19	11	2	0	0	0	0.024412	1	6548	6548		31.955	0	1	122950			24121	9957	16569	16607	28024	28024					0.007418022430442761
IAFLATEEGP	10	Unmodified	_IAFLATEEGP_					0	0	0		ASCC3|p.D1584G|1|0.16|ENSG00000112249|chr6:100625226-100625226|T/C|missense_variant	ASCC3|p.D1584G|1|0.16|ENSG00000112249|chr6:100625226-100625226|T/C|missense_variant	ASCC3|p.D1584G|1|0.16|ENSG00000112249|chr6:100625226-100625226|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3135986328125	2	524.27149	1046.52843	-0.50927	-0.000267	-2.0164	-0.0010571	-2.5256	-0.0013241	524.270175278112	73.53	0.29165	73.259	73.129	73.421	-0.27126					11	7	2	0	0	0	0.03519	1	8959	8959		37.159	3.2375	1	106800			24122	139	16570	16608	28025	28025					0.00702330486478786
IAFLGGIII	9	Unmodified	_IAFLGGIII_					0	0	0			REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2292175292969	2	458.796946	915.57934	-0.34979	-0.00016048	-3.9052	-0.0017917	-4.255	-0.0019522	458.79517605623533	30.448	0.33086	30.522	30.296	30.626	0.074314					9	7	2	0	0	0	0.024289	1	1909	1909		49.211	10.189	1	72752	+		24123	36949	16571	16609	28026	28026					0.11817324322009881
IAFLHALW	8	Unmodified	_IAFLHALW_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7810363769531	2	485.779088	969.543623	0.30251	0.00014695	4.2151	0.0020476	4.5176	0.0021946	485.78103827129513	80.929	1.107	80.723	80.385	81.492	-0.20633					57	26	3	0	0	0	0.29808	1	9735	9735		112.7	30.464	1	4558200			24124	2021	16572	16610	28027	28027					0.057632868649761804
IAFLHALW	8	Unmodified	_IAFLHALW_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7806701660156	2	485.779088	969.543623	0.079585	3.8661E-05	4.3874	0.0021313	4.467	0.00217	485.78111493176146	80.858	1.1984	80.713	80.368	81.566	-0.146					61	28	3	0	0	0	0.29808	1	9722	9722		112.7	41.409	1	4370900			24125	2021	16572	16610	28028	28028					0.057632868649761804
IAFLHKTLS	9	Unmodified	_IAFLHKTLS_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2877197265625	2	515.30821	1028.60187	-0.1368	-7.0493E-05	0.90965	0.00046875	0.77286	0.00039826	515.3078370109258	40.551	0.65203	40.326	40.041	40.693	-0.225					36	17	3	0	0	0	0.024205	1	3485	3485		63.306	7.8021	1	417570	+		24126	20842	16573	16611	28029	28029					0.08870923719609891
IAFNCGSPD	9	Carbamidomethyl (C)	_IAFNC(Carbamidomethyl (C))GSPD_	IAFNC(1)GSPD		IAFNC(77)GSPD		0	1	0			REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.730224609375	2	490.710742	979.406931	-0.44894	-0.0002203	-2.5047	-0.0012291	-2.9536	-0.0014494	490.7102341319984	27.628	0.1451	27.615	27.5	27.645	-0.012983					6	3	2	0	0	0	0.023007	1	1517	1517		76.774	12.567	1	24708	+		24127	19811	16574	16612	28030	28030	250				-0.08359615147685417
IAFPAAPLLT	10	Unmodified	_IAFPAAPLLT_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29278564453125	2	507.305136	1012.59572	1.5905	0.00080687	-1.5615	-0.00079216	0.028992	1.4708E-05	507.3042240004776	74.235	0.63771	74.235	73.913	74.551	0					24	14	3	0	0	0	0.03519	1	9088	9088		63.306	40.264	1	171240			24128	9097	16575	16613	28031	28031					0.08992405488072563
IAFSTNPSL	9	Unmodified	_IAFSTNPSL_					0	0	0		nc|ENSG00000182333|P07098-4|LIPF;nc|ENSG00000182333|P07098-3|LIPF;nc|ENSG00000182333|P07098-2|LIPF;ENSG00000182333|ENST00000238983|LIPF	nc|ENSG00000182333|P07098-4|LIPF	nc|ENSG00000182333|P07098-4|LIPF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.27178955078125	2	475.2531	948.491647	-0.31647	-0.0001504	0.94538	0.00044929	0.62891	0.00029889	475.25351102245065	83.925	1.7743	83.835	83.215	84.989	-0.090454					53	41	2	0	0	0	0.016258	1	10435	10435		129.68	14.224	1	282180			24129	18569	16576	16614	28032	28032					0.01534078660574778
IAFSTNPSL	9	Unmodified	_IAFSTNPSL_					0	0	0		nc|ENSG00000182333|P07098-4|LIPF;nc|ENSG00000182333|P07098-3|LIPF;nc|ENSG00000182333|P07098-2|LIPF;ENSG00000182333|ENST00000238983|LIPF	nc|ENSG00000182333|P07098-4|LIPF	nc|ENSG00000182333|P07098-4|LIPF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.2531	948.491647	-0.41322	-0.00019638	0.85672	0.00040716	0.4435	0.00021077	475.25343566585053	83.78	1.4612	83.806	82.831	84.292	0.02655	-0.014228	-4.4923E-05	NaN	129.68	44	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279750			24130	18569	16576	16614							0.01534078660574778
IAFVRLIQ	8	Unmodified	_IAFVRLIQ_					0	0	0		nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-7|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.3031921386719	2	480.30547	958.596387	0.34671	0.00016653	-4.4353	-0.0021303	-4.0886	-0.0019638	480.3031236248588	18.492	0.53994	18.36	18.154	18.694	-0.13148					21	10	3	0	0	0	1.0472	1	298	298		29.842	0	1	183310			24131	18610	16577	16615	28033	28033					0.11543244927804608
IAFVRLPSLKV	11	Unmodified	_IAFVRLPSLKV_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000392495.7_1_12:121202804-121206971:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.900634765625	2	621.900266	1241.78598	0.29861	0.0001857	1.2585	0.00078263	1.5571	0.00096834	621.9009009435291	106.07	0.38474	105.94	105.7	106.09	-0.1238					22	13	2	0	0	0	1.0521	1	13197	13197		24.519	8.8774	1	137450			24132	6623	16578	16616	28034	28034					0.1747569215031035
IAFWVSEDKD	10	Unmodified	_IAFWVSEDKD_					0	0	0		EIF3B|p.P484S|1|0.13|ENSG00000106263|chr7:2369518-2369518|C/T|missense_variant	EIF3B|p.P484S|1|0.13|ENSG00000106263|chr7:2369518-2369518|C/T|missense_variant	EIF3B|p.P484S|1|0.13|ENSG00000106263|chr7:2369518-2369518|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.86309814453125	3	403.864394	1208.57135	0.2025	8.1782E-05	-2.9447	-0.0011893	-2.7422	-0.0011075	403.86298618910075	27.924	1.0483	27.679	27.073	28.121	-0.24524					102	24	7	0	0	0	1.0508	1	1574	1574		29.551	0	1	2831300			24133	691	16579	16617	28035	28035					-0.02458899456087238
IAGAGRLSLL	10	Unmodified	_IAGAGRLSLL_					0	0	0			REV__ENSG00000231389|ENST00000419277|HLA-DPA1	REV__ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.8062438964844	2	485.805834	969.597115	-1.2571	-0.00061069	0.93095	0.00045226	-0.32611	-0.00015843	485.8061720813172	34.337	0.67546	34.387	34.047	34.723	0.050255					51	16	4	0	0	0	0.79525	1	2486	2486		60.972	2.19	1	3636300	+		24134	28897	16580	16618	28036	28036					0.11110039576851705
IAGAIHAFVQ	10	Unmodified	_IAGAIHAFVQ_					0	0	0			REV__nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	REV__nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3037719726562	2	513.790184	1025.56581	-1.0511	-0.00054003	-2.8035	-0.0014404	-3.8546	-0.0019805	513.7883081773957	29.413	0.43596	29.491	29.327	29.763	0.078344					15	10	2	0	0	0	0.03519	1	1763	1763		35.618	0	1	130290	+		24135	24454	16581	16619	28037	28037					0.05405466542742943
IAGDVGVIRR	10	Unmodified	_IAGDVGVIRR_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2747192382812	2	528.31964	1054.62473	-1.1615	-0.00061365	2.1738	0.0011485	1.0123	0.00053483	528.320751012705	46.011	0.73161	45.859	45.512	46.244	-0.15156					45	20	3	0	0	0	0.03519	1	4557	4557		34.173	0	1	1552800	+		24136	20928	16582	16620	28038	28038					0.09959942837099334
IAGEERAL	8	Unmodified	_IAGEERAL_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.7376403808594	2	429.737617	857.460681	-1.1294	-0.00048534	1.1631	0.00049985	0.033757	1.4507E-05	429.73813615610237	24.787	1.0706	24.74	24.308	25.379	-0.047148					59	24	5	0	0	0	0.39824	1	1123	1123		97.473	0	1	5544000			24137	3949	16583	16621	28039	28039					0.026249253463333844
IAGETGQLL	9	Unmodified	_IAGETGQLL_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2474060058594	2	451.2531	900.491647	-0.34483	-0.0001556	-3.5208	-0.0015888	-3.8656	-0.0017444	451.2500016287783	39.6	2.9552	39.377	38.857	41.812	-0.22311					140	77	4	0	0	0	0.6504	1	3376	3376		49.442	0	1	2303300	+		24138	27723	16584	16622	28040	28040					0.03742078660570769
IAGFFLTV	8	Unmodified	_IAGFFLTV_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;VCL-ADK|9|fusion;VCL-ADK|11|fusion;VCL-ADK|7|fusion	nc|ENSG00000156110|P55263-4|ADK	nc|ENSG00000156110|P55263-4|ADK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2382507324219	2	434.252372	866.49019	0.061463	2.669E-05	-0.7385	-0.0003207	-0.67704	-0.00029401	434.25089385571937	34.423	0.45612	34.419	34.112	34.568	-0.0045624					14	11	2	0	0	0	0.027866	1	2516	2516		65.897	11.133	1	41566			24139	6513	16585	16623	28041	28041					0.05160489362469889
IAGFLYTILIL	11	Unmodified	_IAGFLYTILIL_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.9264831542969	3	412.924925	1235.75295	0.066519	2.7467E-05	3.7035	0.0015293	3.77	0.0015567	412.9263750344714	31.199	0.95001	31.199	30.879	31.829	0					69	22	4	0	0	0	0.97926	1	2066	2066		41.427	3.9184	1	1696700			24140	4216	16586	16624	28042	28042					0.14450065307619298
IAGFLYTILIL	11	Unmodified	_IAGFLYTILIL_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.9264831542969	3	412.924925	1235.75295	0.16867	6.965E-05	3.5995	0.0014863	3.7682	0.001556	412.92635304645233	31.137	1.1125	31.149	30.831	31.943	0.011799					73	26	4	0	0	0	0.97926	1	2050	2050		41.427	1.3684	1	1408800			24141	4216	16586	16624	28043	28043					0.14450065307619298
IAGFLYTILIL	11	Unmodified	_IAGFLYTILIL_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	412.924925	1235.75295	0.025282	1.044E-05	3.8662	0.0015965	3.8915	0.0016069	412.92643285758936	30.978	1.5415	31.049	30.704	32.246	0.07065	-0.083284	0.00016232	NaN	41.427	79	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042400			24142	4216	16586	16624							0.14450065307619298
IAGGGGRGRR	10	Unmodified	_IAGGGGRGRR_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.24346923828125	2	478.778474	955.542394	0.40275	0.00019283	2.1784	0.001043	2.5812	0.0012358	478.77950000291224	40.343	0.84459	40.231	39.677	40.521	-0.11222					50	22	4	0	0	0	0.03519	1	3557	3557		58.782	14.665	1	2411600	+		24143	36757	16587	16625	28044	28044					0.0628446554879929
IAGIAVLRSL	10	Unmodified	_IAGIAVLRSL_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6;ENSG00000183269|ENST00000537935|OR52E8	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3135070800781	2	506.829309	1011.64407	0.32719	0.00016583	-0.84826	-0.00042992	-0.52107	-0.00026409	506.82868108129975	64.385	0.41766	64.431	64.225	64.642	0.045502					20	10	3	0	0	0	0.03519	1	7484	7484		20.947	6.0821	1	166150			24144	10425	16588	16626	28045	28045					0.1387089912798274
IAGIIRSPK	9	Unmodified	_IAGIIRSPK_					0	0	0		nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER;FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant;ENSG00000151422|ENST00000281092|FER;ENST00000505323.1_1_5:108260361-108380497:+|nuORF	nc|ENSG00000151422|P16591-3|FER	nc|ENSG00000151422|P16591-3|FER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.25537109375	2	477.808377	953.6022	0.86901	0.00041522	-0.92208	-0.00044058	-0.053071	-2.5358E-05	477.8077822135735	41.326	0.6709	41.326	40.908	41.579	0					31	18	2	0	0	0	0.024495	1	3729	3729		26.693	19.003	1	230160			24145	6200	16589	16627	28046	28046					0.12354343439460536
IAGIKEIVED	10	Unmodified	_IAGIKEIVED_					0	0	0		nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2;nc|ENSG00000132932|Q9NTI2-3|ATP8A2	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.8104858398438	2	543.805697	1085.59684	-1.5718	-0.00085474	0.48174	0.00026197	-1.09	-0.00059277	543.8062841924053	62.828	0.59372	62.588	62.394	62.988	-0.23926					38	14	4	0	0	0	0.03519	1	7334	7334		58.782	5.8453	1	921270			24146	4663	16590	16628	28047	28047					0.05746575066336845
IAGILRMV	8	Unmodified	_IAGILRMV_					0	0	0		ENST00000465437.5_1_22:31904270-31924785:+|nuORF	ENST00000465437.5_1_22:31904270-31924785:+|nuORF	ENST00000465437.5_1_22:31904270-31924785:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.89813232421875	2	436.772948	871.531344	-0.6046	-0.00026407	-3.2066	-0.0014005	-3.8112	-0.0016646	436.7709434068956	33.491	0.24476	33.326	33.195	33.44	-0.16565					6	5	2	0	0	0	0.027866	1	2389	2389		29.842	9.3597	1	26347			24147	14783	16591	16629	28048	28048					0.0904392713028983
IAGIPLQPKP	10	Unmodified	_IAGIPLQPKP_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.3245849609375	2	517.32386	1032.63317	1.1431	0.00059133	-1.9138	-0.00099007	-0.77076	-0.00039873	517.3228706277799	63.83	1.3894	63.83	63.336	64.725	0					112	37	6	0	0	0	0.87795	1	7453	7453		55.504	0	1	54186000	+		24148	28095	16592	16630	28049	28049					0.11815496753706611
IAGISAKPNL	10	Unmodified	_IAGISAKPNL_					0	0	0			REV__ENST00000564063.1_1_1:108743279-108743501:+|nuORF	REV__ENST00000564063.1_1_1:108743279-108743501:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.80572509765625	2	492.297842	982.581131	-0.58986	-0.00029039	1.6278	0.00080137	1.038	0.00051098	492.2984256208602	59.696	0.63087	59.782	59.464	60.095	0.085682					33	16	3	0	0	0	0.03519	1	6771	6771		27.882	7.4004	1	2008300	+		24149	35239	16593	16631	28050	28050					0.08914333339930636
IAGISNPR	8	Unmodified	_IAGISNPR_					0	0	0		ENSG00000153093|ENST00000439055|ACOXL	ENSG00000153093|ENST00000439055|ACOXL	ENSG00000153093|ENST00000439055|ACOXL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.240234375	2	414.240327	826.466101	-0.098351	-4.0741E-05	-0.046299	-1.9179E-05	-0.14465	-5.992E-05	414.24036993364	34.115	1.3413	33.891	33.321	34.662	-0.22412					88	33	5	0	0	0	0.89627	1	2468	2468		51.335	0.14276	1	2523900			24150	6318	16594	16632	28051	28051					0.045926489288035555
IAGKKLVK	8	Unmodified	_IAGKKLVK_					0	0	0		ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7846374511719	2	428.802563	855.590573	-0.7661	-0.00032851	0.53469	0.00022928	-0.23141	-9.9229E-05	428.80270646778996	26.061	0.16419	25.898	25.758	25.922	-0.16331					8	4	2	0	0	0	0.027866	1	1257	1257		13.775	0	1	90281			24151	15407	16595	16633	28052	28052					0.15700146416133975
IAGKLRLI	8	Unmodified	_IAGKLRLI_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.756103515625	2	442.308013	882.601472	-0.29011	-0.00012832	-0.70229	-0.00031063	-0.9924	-0.00043894	442.30734742002227	45.287	0.2283	45.287	45.114	45.342	0					9	6	2	0	0	0	0.027866	1	4367	4367		28.254	1.4582	1	56207	+		24152	25763	16596	16634	28053	28053					0.15547548790402743
IAGKSAILG	9	Unmodified	_IAGKSAILG_					0	0	0			REV__KIFAP3|p.E731K|1|0.18|ENSG00000075945|chr1:169954093-169954093|C/T|missense_variant	REV__KIFAP3|p.E731K|1|0.18|ENSG00000075945|chr1:169954093-169954093|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.2608642578125	2	415.260728	828.506903	-0.13111	-5.4445E-05	0.30338	0.00012598	0.17227	7.1537E-05	415.2608282568481	20.298	1.1181	20.298	20.028	21.146	0					55	22	4	0	0	0	0.17455	1	527	527		94.006	3.2298	1	2455200	+		24153	36185	16597	16635	28054	28054					0.08578990248429363
IAGKSAILG	9	Unmodified	_IAGKSAILG_					0	0	0			REV__KIFAP3|p.E731K|1|0.18|ENSG00000075945|chr1:169954093-169954093|C/T|missense_variant	REV__KIFAP3|p.E731K|1|0.18|ENSG00000075945|chr1:169954093-169954093|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.26104736328125	2	415.260728	828.506903	1.3735	0.00057038	-1.0522	-0.00043695	0.32132	0.00013343	415.2602695397028	20.322	1.1814	20.39	20.119	21.3	0.068901					51	23	4	0	0	0	0.25032	2	485	474;485		82.305	2.854	1	2384600	+		24154	36185	16597	16635	28055;28056	28056					0.08578990248429363
IAGLLSIGLR	10	Unmodified	_IAGLLSIGLR_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.75604248046875	2	506.829309	1011.64407	-0.7548	-0.00038255	-0.076641	-3.8844E-05	-0.83144	-0.0004214	506.8298138034339	34.982	0.11193	34.982	34.906	35.018	0					4	2	2	0	0	0	0.03519	1	2645	2645		26.693	0	1	15484	+		24155	23290	16598	16636	28057	28057					0.1387089912797137
IAGLVLIGSE	10	Unmodified	_IAGLVLIGSE_					0	0	0			REV__nc|ENSG00000083312|Q92973-3|TNPO1;REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2915344238281	2	486.292225	970.569897	-0.35508	-0.00017267	-0.38657	-0.00018798	-0.74165	-0.00036066	486.2919999455696	60.048	1.7195	59.848	59.281	61	-0.20016					130	45	6	0	0	0	0.9856	1	6830	6830		47.916	1.9636	1	23652000	+		24156	21540;20712	16599	16637	28058	28058					0.08343511245811897
IAGLVLIGSE	10	Unmodified	_IAGLVLIGSE_					0	0	0			REV__nc|ENSG00000083312|Q92973-3|TNPO1;REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.29248046875	2	486.292225	970.569897	-1.0516	-0.0005114	0.37147	0.00018064	-0.68016	-0.00033075	486.29234932981416	59.764	1.794	59.85	59.206	61	0.085682					123	47	5	0	0	0	0.72219	1	6801	6801		65.803	2.4969	1	19443000	+		24157	21540;20712	16599	16637	28059	28059					0.08343511245811897
IAGLWPLV	8	Unmodified	_IAGLWPLV_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.274169921875	2	434.768189	867.521825	0.54328	0.0002362	-4.4042	-0.0019148	-3.8609	-0.0016786	434.76622976542427	54.618	1.1562	54.716	54.328	55.484	0.098015					79	32	5	0	0	0	0.027866	1	5908	5908		54.895	0	1	7006500	+		24158	20968	16600	16638	28060	28060					0.08276482116423267
IAGLYLLLV	9	Unmodified	_IAGLYLLLV_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000431567.5_1_2:95941253-95943708:+|nuORF;ENST00000487138.5_1_2:95940333-95943144:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79254150390625	2	487.817879	973.621205	-1.195	-0.00058294	4.1138	0.0020068	2.9188	0.0014238	487.8201653525725	36.02	0.16878	35.978	35.864	36.032	-0.042454					5	4	2	0	0	0	0.024475	1	2803	2803		29.842	14.205	1	59353			24159	6449	16601	16639	28061	28061					0.13333880010520716
IAGRQSLLS	9	Unmodified	_IAGRQSLLS_					0	0	0			REV__ENST00000437232.5_1_10:17256830-17256887:-|nuORF	REV__ENST00000437232.5_1_10:17256830-17256887:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75537109375	2	472.779816	943.545079	-0.41508	-0.00019624	-0.72412	-0.00034235	-1.1392	-0.00053859	472.7792806310694	39.544	0.77319	39.568	39.135	39.908	0.023727					34	21	2	0	0	0	0.0242	1	3383	3383		79.713	26.361	1	673600	+		24160	32474	16602	16640	28062	28062					0.07104876163089102
IAGSPKGTII	10	Unmodified	_IAGSPKGTII_					0	0	0			REV__ENSG00000183735|ENST00000331710|TBK1	REV__ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7524108886719	2	478.792392	955.570232	-0.0041475	-1.9858E-06	-1.473	-0.00070524	-1.4771	-0.00070723	478.79164158871123	33.298	0.90931	33.298	32.79	33.7	0					60	24	4	0	0	0	0.03519	1	2390	2390		32.812	0	1	694950	+		24161	27600	16603	16641	28063	28063					0.09066930965661868
IAGSPLGILL	10	Unmodified	_IAGSPLGILL_					0	0	0			REV__nc|ENSG00000127463|Q8N766-4|EMC1	REV__nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.3055114746094	2	477.305136	952.595718	0.53431	0.00025503	0.22662	0.00010817	0.76093	0.0003632	477.3048493463306	91.423	0.8466	91.435	91.114	91.961	0.011276					43	19	3	0	0	0	1.0541	1	11510	11510		38.806	10.924	1	1427100	+		24162	22932	16604	16642	28064	28064					0.11752405488095974
IAGTKSTTV	9	Unmodified	_IAGTKSTTV_					0	0	0		ENSG00000043093|ENST00000292782|DCUN1D1	ENSG00000043093|ENST00000292782|DCUN1D1	ENSG00000043093|ENST00000292782|DCUN1D1	MSMS	OPSCC_39_ClassI_Rep-2	2	439.2587890625	2	439.2531	876.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.663	1	58.476	57.976	58.976	-0.18705								0	0	0	0.29326	1	6626	6626		68.787	2.3575	1				24163	1085	16605	16643	28065	28065					0.048460786605687645
IAGTKWSQ	8	Unmodified	_IAGTKWSQ_					0	0	0		nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1;ENSG00000164037|ENST00000296422|SLC9B1;ENST00000509614.1_1_4:103822343-103831634:-|nuORF;ENST00000504216.5_1_4:103822276-103853306:-|nuORF	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.268798828125	2	445.74016	889.465767	-0.46214	-0.00020599	-2.339	-0.0010426	-2.8012	-0.0012486	445.73895328786335	65.199	1.0387	65.199	64.836	65.875	0					60	28	3	0	0	0	0.027866	1	7688	7688		29.15	10.825	1	3120200			24164	7192	16606	16644	28066	28066					0.016612292089462244
IAGVEGLLP	9	Unmodified	_IAGVEGLLP_					0	0	0		ENST00000446149.6_1_1:38181546-38201012:-|nuORF	ENST00000446149.6_1_1:38181546-38201012:-|nuORF	ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7590637207031	2	434.760561	867.506569	-0.42092	-0.000183	-2.4981	-0.0010861	-2.919	-0.0012691	434.7593793245515	21.563	1.6213	21.563	20.998	22.619	0					79	33	4	0	0	0	0.29104	1	666	666		76.847	13.54	1	1123500			24165	14450	16607	16645	28067	28067					0.06751570528570028
IAGVIRVVE	9	Unmodified	_IAGVIRVVE_					0	0	0		ENSG00000104946|ENST00000221543|TBC1D17;nc|ENSG00000104946|Q9HA65-3|TBC1D17	ENSG00000104946|ENST00000221543|TBC1D17	ENSG00000104946|ENST00000221543|TBC1D17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.280029296875	2	478.300384	954.586216	0.78802	0.00037691	-0.65331	-0.00031248	0.13471	6.4431E-05	478.3000730304671	59.597	0.98991	59.397	59.063	60.053	-0.20016					39	26	2	0	0	0	0.024487	1	6740	6740		40.573	10.069	1	488020			24166	2622	16608	16646	28068	28068					0.10710637202555517
IAGVPLKDL	9	Unmodified	_IAGVPLKDL_					0	0	0		ENSG00000171989|ENST00000307144|LDHAL6B;ENSG00000166800|ENST00000280706|LDHAL6A	ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7375183105469	2	463.289485	924.564418	0.4171	0.00019324	1.6743	0.00077569	2.0914	0.00096892	463.29031811401717	73.018	0.5735	72.737	72.506	73.08	-0.28124					15	13	2	0	0	0	0.024258	1	8866	8866		26.796	0	1	165550			24167	8228	16609	16647	28069	28069					0.09911832453974512
IAGWDPQEG	9	Unmodified	_IAGWDPQEG_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4700983-4701328:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.79638671875	2	486.724707	971.43486	1.0285	0.0005006	-0.99497	-0.00048427	0.033537	1.6323E-05	486.72416334965266	59.776	0.66011	59.776	59.444	60.104	0					32	17	2	0	0	0	0.024205	1	6790	6790		35.618	0	1	292380			24168	5564	16610	16648	28070	28070					-0.05199968895942675
IAHFVLSL	8	Unmodified	_IAHFVLSL_					0	0	0			REV__ENSG00000148358|ENST00000347136|GPR107	REV__ENSG00000148358|ENST00000347136|GPR107	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2693786621094	2	450.271096	898.527639	-0.67799	-0.00030528	-4.0769	-0.0018357	-4.7549	-0.002141	450.269144272415	43.746	1.0146	43.746	43.367	44.382	0					78	28	5	0	0	0	0.58212	1	4117	4117		77.944	3.4272	1	6173800	+		24169	24612	16611	16649	28071	28071					0.07431580628099255
IAHICHVAQ	9	Unmodified	_IAHICHVAQ_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.8214111328125	2	496.260736	990.50692	-0.13271	-6.5858E-05	-1.603	-0.00079552	-1.7357	-0.00086137	496.2598208992323	42.393	0.60703	42.26	41.921	42.528	-0.1322					56	17	5	0	0	0	0.024443	1	3893	3893		35.201	6.0512	1	1598000	+		24170	22614	16612	16650	28072	28072					0.011286669767741841
IAHLEEPTF	9	Unmodified	_IAHLEEPTF_					0	0	0			REV__ENSG00000157557|ENST00000360938|ETS2	REV__ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7720336914062	2	528.771657	1055.52876	-0.32402	-0.00017134	-0.0090528	-4.7869E-06	-0.33308	-0.00017612	528.7717097272682	55.784	1.1916	55.567	55.237	56.429	-0.21607					48	31	2	0	0	0	0.36105	1	6025	6025		68.485	24.108	1	2733000	+		24171	25136	16613	16651	28073	28073					0.00321750206330762
IAHLGEVSPL	10	Unmodified	_IAHLGEVSPL_					0	0	0			REV__nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	REV__nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.2971801757812	2	518.295299	1034.57605	0.17839	9.2457E-05	3.3644	0.0017438	3.5428	0.0018362	518.2969119261578	102.55	1.8614	102.42	101.5	103.36	-0.12931					94	44	4	0	0	0	0.87795	1	12754	12754		55.504	2.1528	1	4318600	+		24172	21789	16614	16652	28074	28074					0.060140294773418645
IAHQCHRK	8	Unmodified	_IAHQCHRK_					0	0	0			REV__CPPED1|p.Q194K|1|0.06|ENSG00000103381|chr16:12704759-12704759|G/T|missense_variant	REV__CPPED1|p.Q194K|1|0.06|ENSG00000103381|chr16:12704759-12704759|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.3075866699219	2	496.763978	991.513402	0.22545	0.000112	-2.9029	-0.0014421	-2.6775	-0.0013301	496.7632405392433	21.854	0.42964	21.677	21.445	21.875	-0.17721					19	8	3	0	0	0	0.027866	1	725	725		26.796	2.5934	1	36574	+		24173	19613	16615	16653	28075	28075					0.017306049281501146
IAHRDCVKN	9	Unmodified	_IAHRDCVKN_					0	0	0		ENST00000515388.1_1_4:144316123-144316261:+|nuORF	ENST00000515388.1_1_4:144316123-144316261:+|nuORF	ENST00000515388.1_1_4:144316123-144316261:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2737426757812	2	528.274375	1054.5342	-0.54816	-0.00028958	-0.31389	-0.00016582	-0.86205	-0.0004554	528.2739998122568	91.992	1.0475	91.87	91.457	92.505	-0.12242					48	24	3	0	0	0	0.39228	1	11286	11286		66.429	0	1	1552200			24174	15899	16616	16654	28076	28076					0.009111505171631507
IAHRDCVKN	9	Unmodified	_IAHRDCVKN_					0	0	0		ENST00000515388.1_1_4:144316123-144316261:+|nuORF	ENST00000515388.1_1_4:144316123-144316261:+|nuORF	ENST00000515388.1_1_4:144316123-144316261:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2730712890625	2	528.274375	1054.5342	0.18527	9.7875E-05	-0.97667	-0.00051595	-0.7914	-0.00041808	528.2736082481291	92.042	1.0477	91.9	91.573	92.62	-0.14131					58	24	3	0	0	0	0.32811	1	11302	11302		71.877	8.5712	1	1907000			24175	15899	16616	16654	28077	28077					0.009111505171631507
IAHRVTTVL	9	Unmodified	_IAHRVTTVL_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3125915527344	2	505.311284	1008.60801	0.25083	0.00012675	3.6625	0.0018507	3.9134	0.0019775	505.31300627924	21.097	0.73514	20.902	20.632	21.367	-0.19577					35	14	4	0	0	0	0.96322	1	624	624		27.882	4.8398	1	260750			24176	3858	16617	16655	28078	28078					0.1040544195111579
IAHRVTTVL	9	Unmodified	_IAHRVTTVL_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.311284	1008.60801	0.22682	0.00011462	3.6718	0.0018554	3.8986	0.00197	505.3130215777209	21.019	0.67442	20.842	20.581	21.256	-0.17721	-0.039192	-0.0006564	NaN	27.882	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282350			24177	3858	16617	16655							0.1040544195111579
IAIGKLSLTK	10	Unmodified	_IAIGKLSLTK_					0	0	0			REV__ENST00000518780.1_1_8:1704216-1707628:+|nuORF	REV__ENST00000518780.1_1_8:1704216-1707628:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2720336914062	2	522.344792	1042.67503	-0.25787	-0.0001347	-2.1737	-0.0011354	-2.4315	-0.0012701	522.3437470676552	42.337	0.172	42.337	42.289	42.461	0					7	4	2	0	0	0	0.03519	1	3896	3896		24.519	4.0374	1	78508	+		24178	34243	16618	16656	28079	28079					0.15540052442202068
IAIGPVFVVD	10	Unmodified	_IAIGPVFVVD_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7431030273438	2	515.302593	1028.59063	-0.79465	-0.00040948	-2.9902	-0.0015409	-3.7849	-0.0019504	515.3008409944141	69.758	0.52994	69.771	69.463	69.993	0.012421					27	12	3	0	0	0	0.03519	1	8360	8360		17.365	6.4994	1	746750			24179	7347	16619	16657	28080	28080					0.07748101625475101
IAIKVSVHP	9	Unmodified	_IAIKVSVHP_					0	0	0		ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-2|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	ENSG00000198948|ENST00000361618|MFAP3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.3031005859375	2	482.302927	962.591301	-0.41568	-0.00020048	0.41991	0.00020252	0.0042294	2.0399E-06	482.3029518387299	73.291	0.61356	73.301	72.944	73.558	0.0096512					41	15	4	0	0	0	0.20304	1	8862	8862		88.643	0	1	2205500			24180	10260	16620	16658	28081	28081					0.10850941065177722
IAILDAFLSK	10	Unmodified	_IAILDAFLSK_					0	0	0		ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7823486328125	2	545.828975	1089.6434	-0.3447	-0.00018815	0.56101	0.00030622	0.21631	0.00011807	545.8286894528947	75.816	0.77733	75.558	75.319	76.096	-0.25866					28	19	3	0	0	0	0.03519	1	8958	8958		16.473	6.2079	1	161950			24181	3634	16621	16659	28082	28082					0.10216059688264068
IAILIGSPV	9	Unmodified	_IAILIGSPV_					0	0	0			REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7876892089844	2	441.786579	881.558604	-0.34704	-0.00015332	3.3795	0.001493	3.0324	0.0013397	441.78799059467195	43.095	2.3661	42.982	42.775	45.141	-0.11253					131	63	5	0	0	0	0.78069	1	3946	3946		40.573	0	1	16234000	+		24182	27823	16622	16660	28083	28083					0.11308733942325944
IAILIGSPV	9	Unmodified	_IAILIGSPV_					0	0	0			REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	2	441.786579	881.558604	-0.5192	-0.00022937	3.5225	0.0015562	3.0033	0.0013268	441.7880387330216	43.278	2.1204	43.041	42.8	44.92	-0.23736					124	56	5	0	0	0	0.75282	2	3951	3951;3977		42.474	3.6683	1	15366000	+		24183	27823	16622	16660	28084;28085	28084					0.11308733942325944
IAILIGSPV	9	Unmodified	_IAILIGSPV_					0	0	0			REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7878112792969	2	441.786579	881.558604	-0.43648	-0.00019283	3.3822	0.0014942	2.9457	0.0013014	441.78796500551965	43.27	2.2731	43.044	42.833	45.106	-0.22597					132	61	5	0	0	0	0.75282	2	3963	3939;3963		42.474	1.9018	1	17296000	+		24184	27823	16622	16660	28086;28087	28087					0.11308733942325944
IAILLATRGLP	11	Unmodified	_IAILLATRGLP_					0	0	0			REV__TRPC4|p.H151Ifs*7|1|0.36|ENSG00000133107|chr13:37746383-37746383|G/-|frameshift_variant;REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3109741210938	2	569.371341	1136.72813	-0.15281	-8.7003E-05	-3.9125	-0.0022277	-4.0653	-0.0023147	569.3677699781041	52.304	0.15417	52.12	51.998	52.153	-0.18404					5	3	2	0	0	0	0.024774	1	5403	5403		30.318	2.4355	1	43137	+		24185	23350;37734	16623	16661	28088	28088					0.16523430224901858
IAIMKKPTF	9	Unmodified	_IAIMKKPTF_					0	0	0			REV__IFI16|p.I629M|1|0.15|ENSG00000163565|chr1:159051900-159051900|C/G|missense_variant	REV__IFI16|p.I629M|1|0.15|ENSG00000163565|chr1:159051900-159051900|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2676391601562	2	524.814813	1047.61507	-0.13595	-7.1348E-05	3.5086	0.0018413	3.3726	0.00177	524.8164374207937	45.181	0.61811	45.225	44.894	45.512	0.04388					39	17	3	0	0	0	0.024427	1	4362	4362		42.396	20.436	1	693670	+		24186	36144	16624	16662	28089	28089					0.09317038507333564
IAIMKKPTF	9	Unmodified	_IAIMKKPTF_					0	0	0			REV__IFI16|p.I629M|1|0.15|ENSG00000163565|chr1:159051900-159051900|C/G|missense_variant	REV__IFI16|p.I629M|1|0.15|ENSG00000163565|chr1:159051900-159051900|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.814813	1047.61507	-0.82097	-0.00043086	4.0329	0.0021165	3.212	0.0016857	524.8168161424592	45.271	0.58446	45.123	44.83	45.415	-0.1488	0.015792	-0.00014558	NaN	42.396	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735660	+		24187	36144	16624	16662							0.09317038507333564
IAIRNSPI	8	Unmodified	_IAIRNSPI_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2712707519531	2	442.271627	882.528701	0.042251	1.8687E-05	0.084828	3.7517E-05	0.12708	5.6204E-05	442.27152393372546	46.412	0.93131	46.464	46.167	47.099	0.051395					73	25	4	0	0	0	0.29372	1	4547	4547		114.59	4.2486	1	4408000	+		24188	24500	16625	16663	28090	28090					0.08273794996978268
IAISLLLVLT	10	Unmodified	_IAISLLLVLT_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.8218994140625	2	528.357368	1054.70018	-1.3273	-0.00070126	-1.4018	-0.00074066	-2.7291	-0.0014419	528.356640795519	32.867	0.41709	32.867	32.679	33.096	0					12	10	2	0	0	0	0.03519	1	2295	2295		27.882	0	1	58849	+		24189	23499	16626	16664	28091	28091					0.17502107244786203
IAITETLII	9	Unmodified	_IAITETLII_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2785949707031	2	493.810251	985.605948	-0.13902	-6.8651E-05	0.11763	5.8085E-05	-0.021397	-1.0566E-05	493.8103181043444	89.145	0.97209	89.017	88.744	89.716	-0.12774					29	22	2	0	0	0	0.024541	1	10963	10963		17.365	0	1	90705	+		24190	20681	16627	16665	28092	28092					0.11256968422685532
IAIVFPVQN	9	Unmodified	_IAIVFPVQN_					0	0	0		ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7986145019531	2	500.794935	999.575317	0.069481	3.4796E-05	4.4057	0.0022064	4.4752	0.0022412	500.79818337706723	93.297	2.4951	93.175	92.884	95.379	-0.12215					109	57	4	0	0	0	0.88411	1	11500	11500		33.516	3.674	1	1781000			24191	8350	16628	16666	28093	28093					0.07551234828281395
IAIVQAQQA	9	Unmodified	_IAIVQAQQA_					0	0	0		SLC35A2|p.V179I|1|0.64|ENSG00000102100|chrX:48905374-48905374|C/T|missense_variant	SLC35A2|p.V179I|1|0.64|ENSG00000102100|chrX:48905374-48905374|C/T|missense_variant	SLC35A2|p.V179I|1|0.64|ENSG00000102100|chrX:48905374-48905374|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.261474609375	2	471.274367	940.53418	0.69123	0.00032576	-1.7995	-0.00084806	-1.1083	-0.0005223	471.2739599612473	25.925	0.21442	26.005	25.835	26.049	0.08009					6	4	2	0	0	0	0.024436	1	1217	1217		30.504	9.5567	1	17522			24192	37886	16629	16667	28094	28094					0.061534737887996016
IAKAPGHR	8	Unmodified	_IAKAPGHR_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.2561950683594	2	425.256311	848.49807	-0.16348	-6.9519E-05	0.38064	0.00016187	0.21716	9.2349E-05	425.2563848537095	35.471	0.94861	35.515	35.156	36.105	0.04406					41	24	2	0	0	0	1.0239	1	2695	2695		33.516	5.6333	1	2645600	+		24193	24816	16630	16668	28095	28095					0.06776061402615596
IAKESLVKV	9	Unmodified	_IAKESLVKV_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7283935546875	2	493.815867	985.617182	-0.019561	-9.6593E-06	-0.25357	-0.00012522	-0.27313	-0.00013488	493.8156165771914	63.63	0.29607	63.437	63.342	63.638	-0.19243					12	7	2	0	0	0	0.024466	1	7189	7189		31.53	0	1	131070	+		24194	25580	16631	16669	28096	28096					0.12379790516820321
IAKESLVKV	9	Unmodified	_IAKESLVKV_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.815867	985.617182	0.80721	0.00039862	-0.75142	-0.00037106	0.055796	2.7553E-05	493.8153523023735	63.47	0.54168	63.47	63.23	63.772	0	-0.00090159	-7.3743E-05	NaN	27.047	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1094700	+		24195	25580	16631	16669							0.12379790516820321
IAKESLVKV	9	Unmodified	_IAKESLVKV_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.815867	985.617182	0.099651	4.9209E-05	-0.12284	-6.0661E-05	-0.02319	-1.1451E-05	493.8156554863478	63.709	0.53716	63.457	63.228	63.765	-0.25141	-0.013342	0.00054706	NaN	27.047	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1180800	+		24196	25580	16631	16669							0.12379790516820321
IAKESLVKV	9	Unmodified	_IAKESLVKV_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.815867	985.617182	1.5014	0.00074142	-1.3054	-0.00064462	0.19603	9.6801E-05	493.815084465738	63.493	0.57087	63.547	63.267	63.838	0.054104	0.075835	-0.00062086	NaN	27.047	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037300	+		24197	25580	16631	16669							0.12379790516820321
IAKESLVKV	9	Unmodified	_IAKESLVKV_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.815867	985.617182	-0.43844	-0.00021651	0.26641	0.00013156	-0.17203	-8.495E-05	493.8158414497118	63.698	0.25819	63.47	63.366	63.624	-0.22773	-0.0003731	0.0009315	NaN	27.047	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117770	+		24198	25580	16631	16669							0.12379790516820321
IAKGLKFVT	9	Unmodified	_IAKGLKFVT_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.28375244140625	2	488.813128	975.611703	-1.1888	-0.00058111	0.99001	0.00048393	-0.19881	-9.7183E-05	488.8133660254456	55.659	0.66196	55.757	55.371	56.033	0.098015					30	17	2	0	0	0	0.02435	1	6026	6026		42.396	0	1	134290	+		24199	24543	16632	16670	28097	28097					0.12292111724991628
IAKIFPHS	8	Unmodified	_IAKIFPHS_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|329|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|329|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|329|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.77947998046875	2	456.76872	911.522887	-0.060487	-2.7629E-05	-4.2479	-0.0019403	-4.3084	-0.0019679	456.7644549031117	49.352	0.14245	49.199	49.076	49.218	-0.15277					5	3	2	0	0	0	0.027866	1	5067	5067		42.474	13.325	1	27825			24200	17882	16633	16671	28098	28098					0.06358696485324344
IAKIPNFW	8	Unmodified	_IAKIPNFW_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7837829589844	2	494.78437	987.554188	-0.22965	-0.00011363	0.56711	0.0002806	0.33746	0.00016697	494.7844764275216	70.748	2.2931	70.476	69.994	72.288	-0.27185					106	57	3	0	0	0	0.05141	6	8217	8217;8224;8233;8242;8252;8264		180.49	89.556	1	6695400			24201	3731	16634	16672	28099;28100;28101;28102;28103;28104	28099					0.059912695194157095
IAKIPNFW	8	Unmodified	_IAKIPNFW_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.78375244140625	2	494.78437	987.554188	0.026415	1.3069E-05	0.18608	9.2069E-05	0.21249	0.00010514	494.78424852263316	70.67	2.1563	70.412	69.894	72.05	-0.25713					113	54	3	0	0	0	0.088295	8	8240	8214;8223;8232;8240;8248;8257;8267;8283		163.84	81.539	1	6382100			24202	3731	16634	16672	28105;28106;28107;28108;28109;28110;28111;28112	28108					0.059912695194157095
IAKIPNFW	8	Unmodified	_IAKIPNFW_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7835693359375	2	494.78437	987.554188	0.36904	0.00018259	-0.18231	-9.0205E-05	0.18673	9.2389E-05	494.7840998655729	70.539	2.119	70.325	69.814	71.933	-0.21425					109	53	3	0	0	0	0.064924	7	8202	8191;8202;8211;8218;8224;8235;8250		170.31	79.375	1	6299000			24203	3731	16634	16672	28113;28114;28115;28116;28117;28118;28119	28114					0.059912695194157095
IAKIPNFW	8	Unmodified	_IAKIPNFW_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.78437	987.554188	1.0961	0.00054231	-2.8145	-0.0013926	-1.7184	-0.00085025	494.78133634450114	70.809	0.37901	70.809	70.569	70.948	0	0.30332	-0.0024124	NaN	180.49	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56989			24204	3731	16634	16672							0.059912695194157095
IAKKAPHIGQ	10	Unmodified	_IAKKAPHIGQ_					0	0	0			REV__ENSG00000184863|ENST00000401878|RBM33	REV__ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8091430664062	2	531.824558	1061.63456	-1.0525	-0.00055974	2.9472	0.0015674	1.8947	0.0010076	532.3276846549755	47.648	0.30848	47.707	47.522	47.831	0.059097					15	9	2	0	0	0	0.03519	1	4745	4745		27.882	13.017	1	408330	+		24205	27706	16635	16673	28120	28120					0.10621130842446291
IAKKIDWV	8	Unmodified	_IAKKIDWV_					0	0	0			REV__PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	REV__PLEK|p.R94W|1|0.13|ENSG00000115956|chr2:68380804-68380804|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3160400390625	2	486.797478	971.580402	-0.13162	-6.4073E-05	-4.1012	-0.0019965	-4.2328	-0.0020605	486.7952141731448	39.231	0.34708	39.231	39.112	39.459	0					15	9	2	0	0	0	0.027866	1	3380	3380		40.573	0	1	202950	+		24206	37383	16636	16674	28121	28121					0.09347538690894908
IAKKRTTR	8	Unmodified	_IAKKRTTR_					0	0	0		nc|ENSG00000158201|Q8WU67-2|ABHD3	nc|ENSG00000158201|Q8WU67-2|ABHD3	nc|ENSG00000158201|Q8WU67-2|ABHD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.3009033203125	2	487.3169	972.619247	0.063011	3.0706E-05	-0.22816	-0.00011119	-0.16515	-8.0479E-05	487.31658939014426	58.109	0.2496	58.109	57.91	58.159	0					10	6	2	0	0	0	0.027866	1	6547	6547		21.702	0	1	318570			24207	18414	16637	16675	28122	28122					0.13184264045275995
IAKKSWNN	8	Unmodified	_IAKKSWNN_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.8006591796875	2	480.766709	959.518865	0.40234	0.00019343	-3.5247	-0.0016946	-3.1224	-0.0015011	480.7652212734991	94.224	0.19698	94.224	94.047	94.244	0					7	4	2	0	0	0	0.027866	1	11979	11979		21.96	0	1	69154			24208	8799	16638	16676	28123	28123					0.03748606991609904
IAKLEFLPN	9	Unmodified	_IAKLEFLPN_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2715454101562	2	522.808042	1043.60153	-0.40805	-0.00021333	-0.43001	-0.00022481	-0.83807	-0.00043815	522.8071265096419	42.125	0.49785	41.993	41.753	42.251	-0.1322					22	14	2	0	0	0	0.024205	1	3868	3868		44.117	0	1	80990			24209	8503	16639	16677	28124	28124					0.08147503999771288
IAKLRLGTKT	10	Unmodified	_IAKLRLGTKT_					0	0	0			REV__ENST00000577772.5_1_18:66504000-66564823:+|nuORF	REV__ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.814208984375	2	550.861141	1099.70773	-2.0813	-0.0011465	-1.9259	-0.0010609	-4.0072	-0.0022074	550.8604771679135	38.354	0.13157	38.381	38.298	38.429	0.027275					5	3	2	0	0	0	0.03519	1	3142	3142		8.6937	7.3661	1	42574	+		24210	24727	16640	16678	28125	28125					0.16186259565097316
IAKLYHII	8	Unmodified	_IAKLYHII_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.80572509765625	2	485.807845	969.601138	-0.23508	-0.0001142	-4.1178	-0.0020005	-4.3529	-0.0021147	485.8057380356337	35.006	0.74015	34.819	34.56	35.3	-0.18675					52	18	4	0	0	0	0.48546	1	2609	2609		86.935	2.0191	1	1580700	+		24211	27791	16641	16679	28126	28126					0.11512129070570154
IAKQFIQT	8	Unmodified	_IAKQFIQT_					0	0	0			REV__ENST00000217515.10_2_18:54285347-54291556:-|nuORF	REV__ENST00000217515.10_2_18:54285347-54291556:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.7811279296875	2	474.779285	947.544017	5.0424	0.002394	-1.261	-0.00059869	3.7814	0.0017953	474.77853901615157	17.157	0.57019	16.906	16.752	17.322	-0.25049					23	11	4	0	0	0	0.96769	1	119	119		42.396	3.59	1	394130	+		24212	29328	16642	16680	28127	28127					0.06814661794192034
IAKSLLDLNKY	11	Unmodified	_IAKSLLDLNKY_					0	0	0		ENSG00000119138|ENST00000377126|KLF9	ENSG00000119138|ENST00000377126|KLF9	ENSG00000119138|ENST00000377126|KLF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.58660888671875	3	426.586972	1276.73909	0.48423	0.00020656	-2.7857	-0.0011883	-2.3015	-0.00098178	426.5858264495261	18.49	1.0882	18.287	18.014	19.102	-0.20371					57	21	5	0	0	0	1.017	1	294	294		33.039	0.28887	1	1436600			24213	3723	16643	16681	28128	28128					0.11178787808535162
IAKSYKVVTTQ	11	Unmodified	_IAKSYKVVTTQ_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.8841247558594	3	413.243206	1236.70779	-0.78242	-0.00032333	2.1275	0.00087919	1.3451	0.00055586	413.24391158930933	27.955	0.72848	27.787	27.61	28.338	-0.16816					23	17	2	0	0	0	0.024754	1	1590	1590		46.955	21.829	1	328100	+		24214	26616	16644	16682	28129	28129					0.09890214774418382
IAKTLCFLL	9	Unmodified	_IAKTLCFLL_					0	0	0			REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.3082275390625	2	511.309364	1020.60417	0.057216	2.9255E-05	-3.8682	-0.0019779	-3.811	-0.0019486	511.3071272932945	107.45	0.1207	107.44	107.36	107.48	-0.003479					7	4	2	0	0	0	0.59099	1	13751	13751		53.351	3.3269	1	167170	+		24215	34078	16645	16683	28130	28130					0.09469636133053427
IAKTLGGAV	9	Unmodified	_IAKTLGGAV_					0	0	0			REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24	REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2608642578125	2	415.260728	828.506903	-0.10251	-4.2569E-05	0.38796	0.00016111	0.28545	0.00011854	415.26087388806656	20.504	0.96532	20.4	20.178	21.143	-0.10477					52	19	4	0	0	0	0.27161	1	548	548		79.451	0	1	2920200	+		24216	22145	16646	16684	28131	28131					0.08578990248429363
IAKTSQDDA	9	Unmodified	_IAKTSQDDA_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2607421875	2	474.735271	947.45599	0.72181	0.00034267	-1.6292	-0.00077346	-0.90743	-0.00043079	474.7343114251344	43.143	0.3297	43.174	43.046	43.376	0.030827					13	8	2	0	0	0	0.024205	1	3974	3974		44.117	0	1	95147	+		24217	28220	16647	16685	28132	28132					-0.019840035870970496
IAKWWICP	8	Unmodified	_IAKWWICP_					0	0	0			REV__nc|ENSG00000178233|Q8IW70-2|TMEM151B	REV__nc|ENSG00000178233|Q8IW70-2|TMEM151B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8002014160156	2	508.772948	1015.53134	0.071629	3.6443E-05	-1.251	-0.00063645	-1.1793	-0.00060001	508.77350139949414	52.022	0.55135	51.838	51.561	52.112	-0.18404					27	14	3	0	0	0	0.027866	1	5359	5359		13.775	0	1	184900	+		24218	27177	16648	16686	28133	28133					0.024199271302791203
IALALAQDQD	10	Unmodified	_IALALAQDQD_					0	0	0			REV__ENSG00000088367|ENST00000338074|EPB41L1	REV__ENSG00000088367|ENST00000338074|EPB41L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8084106445312	2	529.279846	1056.54514	1.1397	0.00060324	-2.1133	-0.0011185	-0.97356	-0.00051529	529.2780473871724	64.097	1.3498	64.142	63.438	64.788	0.045502					59	36	3	0	0	0	0.03519	1	7394	7394		56.721	10.749	1	1190500	+		24219	20813	16649	16687	28134	28134					0.019128313724195323
IALAQIKNN	9	Unmodified	_IALAQIKNN_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7287902832031	2	492.795466	983.57638	-0.10667	-5.2568E-05	-1.146	-0.00056475	-1.2527	-0.00061731	492.7947538240623	63.361	0.63434	63.177	62.83	63.465	-0.18386					24	15	2	0	0	0	0.024466	1	7166	7166		33.516	0	1	638470			24220	5204	16650	16688	28135	28135					0.08393449197171776
IALDYPMGLL	10	Unmodified	_IALDYPMGLL_					0	0	0			REV__nc|ENSG00000157540|Q13627-4|DYRK1A	REV__nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3035888671875	2	553.301736	1104.58892	-0.45046	-0.00024924	3.5963	0.0019898	3.1458	0.0017406	553.3039421647946	92.6	0.71513	92.6	92.294	93.009	0					29	16	2	0	0	0	0.72219	1	11754	11754		65.803	1.5959	1	416870	+		24221	36814	16651	16689	28136	28136					0.040807245452015195
IALEIKEN	8	Unmodified	_IALEIKEN_					0	0	0			REV__ENST00000521165.1_1_5:170380683-170395393:+|nuORF	REV__ENST00000521165.1_1_5:170380683-170395393:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2686767578125	2	465.26875	928.522947	-0.094055	-4.3761E-05	-0.56204	-0.0002615	-0.6561	-0.00030526	465.26825917434655	42.163	0.77537	42.031	41.716	42.491	-0.13219					88	22	6	0	0	0	0.44658	1	3832	3832		90.777	0	1	6290500	+		24222	28635	16652	16690	28137	28137					0.05582651694658125
IALHLKAF	8	Unmodified	_IALHLKAF_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.74884033203125	2	456.786913	911.559273	-0.73234	-0.00033452	-3.4109	-0.001558	-4.1432	-0.0018926	456.78520865788624	30.426	0.70103	30.426	30.096	30.797	0					26	16	2	0	0	0	0.027866	1	1916	1916		31.579	9.8766	1	180410			24223	6450	16653	16691	28138	28138					0.09995573382036582
IALHRLFF	8	Unmodified	_IALHRLFF_					0	0	0			REV__OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant;REV__nc|ENSG00000254658|Q8NGG1|OR8J2	REV__OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.78369140625	2	508.805637	1015.59672	-0.44296	-0.00022538	-1.5165	-0.00077161	-1.9595	-0.00099699	508.8052570066884	49.854	0.21815	49.854	49.768	49.986	0					8	5	2	0	0	0	0.027866	1	5169	5169		21.702	0	1	55150	+		24224	26196;37172	16654	16692	28139	28139					0.08954664647660593
IALILKAVP	9	Unmodified	_IALILKAVP_					0	0	0		ENST00000358794.9_1_11:63953243-63953438:+|nuORF	ENST00000358794.9_1_11:63953243-63953438:+|nuORF	ENST00000358794.9_1_11:63953243-63953438:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.2889099121094	2	469.325871	936.637189	0.46742	0.00021937	-0.22936	-0.00010764	0.23806	0.00011173	469.3256235565235	74.192	0.50526	73.933	73.78	74.285	-0.25887					17	11	2	0	0	0	0.024497	1	9025	9025		37.028	10.232	1	396820			24225	12724	16655	16693	28140	28140					0.16633586247405674
IALIVVLATK	10	Unmodified	_IALIVVLATK_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2412719726562	2	520.857535	1039.70052	0.12104	6.3044E-05	-0.50107	-0.00026098	-0.38003	-0.00019794	520.8571698159664	76	0.49944	75.741	75.477	75.977	-0.25866					24	12	2	0	0	0	0.03519	1	9024	9024		12.812	0	1	214280			24226	1930	16656	16694	28141	28141					0.18225526964647543
IALLEKVAM	9	Unmodified	_IALLEKVAM_					0	0	0			REV__nc|ENSG00000203995|Q6WRX3-2|ZYG11A	REV__nc|ENSG00000203995|Q6WRX3-2|ZYG11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3008117675781	2	494.298996	986.583439	0.096982	4.7938E-05	3.4651	0.0017128	3.5621	0.0017607	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.85329	1	11961	11961		35.618	2.1027	1	34796000	+		24227	28557	16657	16695	28142	28142					0.08961045753392227
IALLKTSAI	9	Unmodified	_IALLKTSAI_					0	0	0		nc|ENSG00000025434|Q13133-3|NR1H3;ENSG00000025434|ENST00000441012|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.26849365234375	2	465.305136	928.595718	-0.086937	-4.0452E-05	-0.3805	-0.00017705	-0.46744	-0.0002175	465.30458129764713	66.395	0.3768	66.113	65.904	66.281	-0.28148					21	9	4	0	0	0	0.024354	1	7865	7865		47.916	7.343	1	975020			24228	987	16658	16696	28143	28143					0.12856405488071232
IALLKTSAI	9	Unmodified	_IALLKTSAI_					0	0	0		nc|ENSG00000025434|Q13133-3|NR1H3;ENSG00000025434|ENST00000441012|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	nc|ENSG00000025434|Q13133-3|NR1H3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.26904296875	2	465.305136	928.595718	0.52967	0.00024646	-1.4829	-0.00068999	-0.9532	-0.00044353	465.3042664446206	66.163	0.40517	66.193	65.89	66.296	0.030098					18	10	3	0	0	0	0.024323	1	7759	7759		53.351	9.2347	1	1303100			24229	987	16658	16696	28144	28144					0.12856405488071232
IALLRNYIS	9	Unmodified	_IALLRNYIS_					0	0	0			REV__ENSG00000176102|ENST00000323959|CSTF3	REV__ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8169555664062	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.98697	1	10555	10555		23.042	0	1	4521600	+		24230	26995	16659	16697	28145	28145					0.09498308748334239
IALLSAAVK	9	Unmodified	_IALLSAAVK_					0	0	0		nc|ENSG00000136161|O95199-2|RCBTB2;ENSG00000136161|ENST00000344532|RCBTB2	nc|ENSG00000136161|O95199-2|RCBTB2	nc|ENSG00000136161|O95199-2|RCBTB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2737731933594	2	443.292028	884.569503	0.15263	6.7662E-05	0.0019797	8.7757E-07	0.15461	6.8539E-05	443.29083589364	50.346	0.29799	50.427	50.344	50.642	0.08099					10	8	2	0	0	0	0.024294	1	5207	5207		29.15	1.2673	1	192660			24231	4990	16660	16698	28146	28146					0.12260136316604076
IALLVCVLI	9	Unmodified	_IALLVCVLI_					0	0	0		ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.79241943359375	2	478.814282	955.614011	0.22117	0.0001059	-3.6555	-0.0017503	-3.4344	-0.0016444	478.8126149096986	54.053	0.2029	53.906	53.784	53.987	-0.14723					6	5	2	0	0	0	0.024389	1	5858	5858		39.021	0	1	81722			24232	6113	16661	16699	28147	28147					0.13442824138451215
IALLVILIS	9	Unmodified	_IALLVILIS_					0	0	0		ENSG00000172769|ENST00000641865|OR5B3	ENSG00000172769|ENST00000641865|OR5B3	ENSG00000172769|ENST00000641865|OR5B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77752685546875	2	477.833529	953.652505	-0.085675	-4.0939E-05	3.3816	0.0016158	3.2959	0.0015749	477.83411819785255	27.446	0.33033	27.433	27.277	27.608	-0.012983					13	8	2	0	0	0	0.024293	1	1501	1501		33.516	0	1	60085			24233	8304	16662	16700	28148	28148					0.173824530446268
IALPAWIVD	9	Unmodified	_IALPAWIVD_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7956848144531	2	499.289485	996.564418	-0.6715	-0.00033527	-2.0937	-0.0010454	-2.7652	-0.0013807	499.28792668969476	56.57	0.33266	56.405	56.239	56.571	-0.16431					13	8	2	0	0	0	0.024258	1	6269	6269		44.531	15.382	1	115670			24234	990	16663	16701	28149	28149					0.06599832453980525
IALPEKFPQ	9	Unmodified	_IALPEKFPQ_					0	0	0			REV__nc|ENSG00000073150|Q96RD6-2|PANX2	REV__nc|ENSG00000073150|Q96RD6-2|PANX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2900390625	2	521.800217	1041.58588	-0.81664	-0.00042612	-3.3743	-0.0017607	-4.1909	-0.0021868	521.7983586383364	56.56	0.86919	56.56	56.241	57.111	0					40	24	3	0	0	0	0.024263	1	6365	6365		42.396	14.514	1	3353900	+		24235	20495	16664	16702	28150	28150					0.0667521748271156
IALPPIAKW	9	Unmodified	_IALPPIAKW_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	ENSG00000172915|ENST00000379939|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.8150329589844	2	504.81567	1007.61679	-0.21945	-0.00011078	0.13279	6.7033E-05	-0.086659	-4.3747E-05	504.81555946415807	75.059	0.74634	74.796	74.489	75.235	-0.26326					49	17	4	0	0	0	0.20304	1	8871	8871		88.643	37.307	1	1402900			24236	10155;8321	16665	16703	28151	28151					0.11328415587604468
IALPPIAKW	9	Unmodified	_IALPPIAKW_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	ENSG00000172915|ENST00000379939|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.81512451171875	2	504.81567	1007.61679	0.16251	8.2036E-05	-0.36451	-0.00018401	-0.202	-0.00010197	504.81525376101513	74.915	0.90968	74.732	74.434	75.343	-0.18279					48	21	4	0	0	0	0.20304	1	8838	8838		88.643	22.214	1	1235900			24237	10155;8321	16665	16703	28152	28152					0.11328415587604468
IALPPIAKW	9	Unmodified	_IALPPIAKW_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	ENSG00000172915|ENST00000379939|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.81567	1007.61679	0.19839	0.00010015	-0.45812	-0.00023127	-0.25974	-0.00013112	504.81525170270703	75.105	0.74532	74.829	74.519	75.264	-0.27573	0.043652	-0.00026126	NaN	88.643	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370700			24238	10155;8321	16665	16703							0.11328415587604468
IALPSSAGMAR	11	Unmodified	_IALPSSAGMAR_					0	0	0		ENST00000566170.1_1_6:13615096-13615348:-|nuORF	ENST00000566170.1_1_6:13615096-13615348:-|nuORF	ENST00000566170.1_1_6:13615096-13615348:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2735595703125	2	537.292233	1072.56991	-0.81797	-0.00043949	1.7875	0.00096044	0.96958	0.00052095	537.2927680588667	36.413	0.73728	36.413	36.229	36.966	0					25	19	2	0	0	0	0.024785	1	2964	2964		30.318	1.1477	1	270520			24239	16938	16666	16704	28153	28153					0.03653187974168759
IALQSTPSI	9	Unmodified	_IALQSTPSI_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2688293457031	2	465.26875	928.522947	0.045305	2.1079E-05	-0.49011	-0.00022803	-0.44481	-0.00020696	465.2682061031588	42.024	0.99215	42.024	41.722	42.715	0					70	28	4	0	0	0	0.15366	2	3820	3820;3842		98.629	0	1	6325700	+		24240	28157	16667	16705	28154;28155	28154					0.05582651694669494
IALRIINEG	9	Unmodified	_IALRIINEG_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.75201416015625	2	499.803291	997.59203	-0.67589	-0.00033781	0.55703	0.00027841	-0.11885	-5.9404E-05	499.80337940508156	26.065	0.57964	25.829	25.55	26.13	-0.23603					33	15	3	0	0	0	0.024457	1	1277	1277		15.642	4.1308	1	738440			24241	2853	16668	16706	28156	28156					0.09313735714238192
IALTQSAANVK	11	Unmodified	_IALTQSAANVK_					0	0	0		ENSG00000103942|ENST00000450735|HOMER2;nc|ENSG00000103942|Q9NSB8|HOMER2	ENSG00000103942|ENST00000450735|HOMER2	ENSG00000103942|ENST00000450735|HOMER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.7380981445312	2	558.324588	1114.63462	-0.59378	-0.00033152	-2.051	-0.0011451	-2.6448	-0.0014767	558.3234600143073	61.204	0.67281	60.99	60.493	61.166	-0.2134					22	17	2	0	0	0	0.024771	1	7016	7016		42.864	16.068	1	145270			24242	2533	16669	16707	28157	28157					0.08189086051788763
IALVEITP	8	Unmodified	_IALVEITP_					0	0	0		ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2619323730469	2	428.262936	854.51132	0.49679	0.00021276	-3.3115	-0.0014182	-2.8147	-0.0012054	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0239	1	11370	11370		33.516	6.7195	1	86424000			24243	2176	16670	16708	28158	28158					0.07824454671310832
IALVEITP	8	Unmodified	_IALVEITP_					0	0	0		ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	ENSG00000100312|ENST00000216139|ACR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.26171875	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0574	1	11085	11085		26.796	1.3459	1	68116000			24244	2176	16670	16708	28159	28159					0.07824454671310832
IALVWILF	8	Unmodified	_IALVWILF_					0	0	0		ENST00000432809.5_1_3:33339416-33427097:+|nuORF	ENST00000432809.5_1_3:33339416-33427097:+|nuORF	ENST00000432809.5_1_3:33339416-33427097:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2872009277344	2	487.807314	973.600075	1.0899	0.00053164	-1.514	-0.00073852	-0.42409	-0.00020687	487.8074158442689	37.252	0.11143	37.252	37.158	37.269	0					4	2	2	0	0	0	0.027866	1	3012	3012		24.504	0	1	59239			24245	14212	16671	16709	28160	28160					0.11221914701661717
IALWCRDP	8	Carbamidomethyl (C)	_IALWC(Carbamidomethyl (C))RDP_	IALWC(1)RDP		IALWC(89)RDP		0	1	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7613525390625	2	515.760569	1029.50659	-1.0446	-0.00053878	3.767	0.0019429	2.7224	0.0014041	515.7624134590654	35.124	0.7212	35.102	34.828	35.549	-0.021763					46	18	3	0	0	0	0.46709	1	2662	2662		88.643	8.9303	1	2285400			24246	7447	16672	16710	28161	28161	88				-0.006987527430965201
IALYQRDL	8	Unmodified	_IALYQRDL_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3;REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2513122558594	2	496.282192	990.549831	0.63027	0.00031279	-0.95365	-0.00047328	-0.32338	-0.00016049	496.28134605363135	61.288	0.6081	61.288	60.958	61.566	0					23	15	2	0	0	0	0.027866	1	7066	7066		82.305	26.801	1	335740	+		24247	20986;22678;24742	16673	16711	28162	28162					0.054177603058633395
IANAVVQNL	9	Unmodified	_IANAVVQNL_					0	0	0		nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.8013610839844	2	471.274367	940.53418	-0.46313	-0.00021826	-0.91312	-0.00043033	-1.3762	-0.00064859	471.27511921870024	51.531	0.42598	51.254	50.967	51.393	-0.27643					17	10	2	0	0	0	0.024323	1	5262	5262		44.117	7.67	1	216530			24248	2156	16674	16712	28163	28163					0.061534737887996016
IANGCENS	8	Unmodified	_IANGCENS_					0	0	0			REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.16998291015625	2	404.16871	806.322867	0.77366	0.00031269	1.7592	0.00071102	2.5329	0.0010237	404.16976707984236	76.18	1.4585	75.922	75.438	76.897	-0.25803					98	35	5	0	0	0	0.99042	2	9026	9026;9074		38.806	1.647	1	5377600	+		24249	26627	16675	16713	28164;28165	28164					-0.08804146244585809
IANGCENS	8	Unmodified	_IANGCENS_					0	0	0			REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.17059326171875	2	404.16871	806.322867	-0.13149	-5.3143E-05	2.4383	0.00098548	2.3068	0.00093233	404.17013294418155	75.927	1.58	75.751	75.312	76.892	-0.17548					95	38	5	0	0	0	0.91239	2	9030	9014;9030		50.025	5.2619	1	5581700	+		24250	26627	16675	16713	28166;28167	28167					-0.08804146244585809
IANGCENS	8	Unmodified	_IANGCENS_					0	0	0			REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	404.16871	806.322867	0.86182	0.00034832	2.8693	0.0011597	3.7311	0.001508	404.16981000577624	76.142	0.83783	76.142	75.881	76.719	0	0.15683	0.00052243	NaN	50.025	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101330	+		24251	26627	16675	16713							-0.08804146244585809
IANGCENS	8	Unmodified	_IANGCENS_					0	0	0			REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.16871	806.322867	2.3427	0.00094685	1.6113	0.00065124	3.954	0.0015981	404.16918417235365	76.156	0.71019	76.168	75.901	76.611	0.011642	0.18265	-0.00049444	NaN	50.025	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118390	+		24252	26627	16675	16713							-0.08804146244585809
IANGCENS	8	Unmodified	_IANGCENS_					0	0	0			REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	404.16871	806.322867	0.77366	0.00031269	1.7592	0.00071102	2.5329	0.0010237	404.16976707984236	76.18	1.4585	75.922	75.438	76.897	-0.25803	-0.063262	-0.00037487	NaN	50.025	98	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5377600	+		24253	26627	16675	16713							-0.08804146244585809
IANGCENS	8	Unmodified	_IANGCENS_					0	0	0			REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	REV__ENST00000588534.1_1_19:2832263-2834847:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	404.16871	806.322867	-0.13149	-5.3143E-05	2.4383	0.00098548	2.3068	0.00093233	404.17013294418155	75.927	1.58	75.751	75.312	76.892	-0.17548	-0.23395	0.00017404	NaN	50.025	95	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5581700	+		24254	26627	16675	16713							-0.08804146244585809
IANITPIFASG	11	Unmodified	_IANITPIFASG_					0	0	0			REV__nc|ENSG00000075426|P15408-2|FOSL2	REV__nc|ENSG00000075426|P15408-2|FOSL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7802124023438	2	552.308406	1102.60226	-0.49845	-0.0002753	-2.4892	-0.0013748	-2.9877	-0.0016501	552.8066328341689	45.274	0.43552	45.274	45.043	45.478	0					13	12	2	0	0	0	0.024756	1	4394	4394		36.447	4.9169	1	124360	+		24255	36470	16676	16714	28168	28168					0.05506298648788288
IANKANSHQVK	11	Unmodified	_IANKANSHQVK_					0	0	0			REV__nc|ENSG00000196961|O95782|AP2A1	REV__nc|ENSG00000196961|O95782|AP2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5721435546875	3	403.894799	1208.66257	-1.3557	-0.00054755	1.42	0.00057355	0.064378	2.6002E-05	403.8951902448309	21.159	0.78477	20.946	20.673	21.458	-0.2128					25	15	2	0	0	0	0.024735	1	586	586		21.78	0.94327	1	91314	+		24256	28246	16677	16715	28169	28169					0.06658409031865631
IANKNSLVL	9	Unmodified	_IANKNSLVL_					0	0	0		MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2975769042969	2	486.297842	970.581131	-0.31641	-0.00015387	0.24142	0.0001174	-0.074994	-3.6469E-05	486.2978378289203	67.395	0.72693	67.419	66.985	67.712	0.023903					52	17	5	0	0	0	0.39228	1	7970	7970		66.429	0.53182	1	2219100			24257	17966	16678	16716	28170	28170					0.09466333339935318
IANKWEEW	8	Unmodified	_IANKWEEW_					0	0	0		EVI5L|p.E96K|1|0.36|ENSG00000142459|chr19:7847880-7847880|G/A|missense_variant	EVI5L|p.E96K|1|0.36|ENSG00000142459|chr19:7847880-7847880|G/A|missense_variant	EVI5L|p.E96K|1|0.36|ENSG00000142459|chr19:7847880-7847880|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.263671875	2	538.263999	1074.51345	-1.2411	-0.00066802	1.215	0.00065401	-0.026042	-1.4018E-05	538.2645153630465	60.554	1.1269	60.378	60.037	61.164	-0.1761					58	27	4	0	0	0	0.59392	1	6739	6739		76.847	0.072494	1	2703600			24258	17626	16679	16717	28171	28171					-0.020831165908703042
IANMMNEI	8	Unmodified	_IANMMNEI_					0	0	0			REV__STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant	REV__STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.268310546875	2	468.219888	934.425224	-0.86324	-0.00040419	1.2547	0.00058748	0.39146	0.00018329	468.2202721907685	60.549	0.52569	60.628	60.392	60.918	0.078888					20	13	2	0	0	0	0.027866	1	6870	6870		60.294	0	1	180720	+		24259	21271	16680	16718	28172	28172					-0.04461196497345554
IAPLFGIAQV	10	Unmodified	_IAPLFGIAQV_					0	0	0		ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2952270507812	2	514.810585	1027.60662	-0.4248	-0.00021869	-3.8254	-0.0019693	-4.2502	-0.002188	514.8082810254934	53.443	0.40109	53.316	53.104	53.505	-0.12705					14	10	2	0	0	0	0.03519	1	5634	5634		14.865	0	1	124740			24260	8750	16681	16719	28173	28173					0.09391807862357382
IAPLKREREEL	11	Unmodified	_IAPLKREREEL_					0	0	0			REV__JAKMIP3|p.S622L|1|0.35|ENSG00000188385|chr10:132149428-132149428|C/T|missense_variant	REV__JAKMIP3|p.S622L|1|0.35|ENSG00000188385|chr10:132149428-132149428|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.93255615234375	3	451.933143	1352.7776	1.0325	0.00046661	-2.0942	-0.00094645	-1.0617	-0.00047983	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0371	2	12375	12333;12375		28.577	8.5463	1	1299700	+		24261	36167	16682	16720	28174;28175	28175					0.11532093443042868
IAPLKREREEL	11	Unmodified	_IAPLKREREEL_					0	0	0			REV__JAKMIP3|p.S622L|1|0.35|ENSG00000188385|chr10:132149428-132149428|C/T|missense_variant	REV__JAKMIP3|p.S622L|1|0.35|ENSG00000188385|chr10:132149428-132149428|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9329833984375	3	451.933143	1352.7776	-0.033263	-1.5033E-05	-1.0887	-0.00049204	-1.122	-0.00050707	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0739	2	12232	12232;12325		18.531	1.2461	1	1141700	+		24262	36167	16682	16720	28176;28177	28176					0.11532093443042868
IAPNTMKLEDF	11	Unmodified	_IAPNTMKLEDF_					0	0	0			REV__ENSG00000153310|ENST00000694912|CYRIB	REV__ENSG00000153310|ENST00000694912|CYRIB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.86077880859375	3	426.884801	1277.63257	-0.43331	-0.00018497	1.9104	0.0008155	1.477	0.00063053	427.22066892360965	21.518	0.86325	21.428	21.109	21.972	-0.090092					45	17	4	0	0	0	0.02477	1	628	628		28.577	22.256	1	482490	+		24263	24899	16683	16721	28178	28178					0.00486289251693961
IAPNTMKLEDF	11	Unmodified	_IAPNTMKLEDF_					0	0	0			REV__ENSG00000153310|ENST00000694912|CYRIB	REV__ENSG00000153310|ENST00000694912|CYRIB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	426.884801	1277.63257	-1.0043	-0.0004287	2.9046	0.0012399	1.9003	0.00081122	427.22119553592785	21.443	0.86796	21.443	21.097	21.965	0	-0.0054699	0.0027747	NaN	21.032	51	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390560	+		24264	24899	16683	16721							0.00486289251693961
IAPNTMKLEDF	11	Unmodified	_IAPNTMKLEDF_					0	0	0			REV__ENSG00000153310|ENST00000694912|CYRIB	REV__ENSG00000153310|ENST00000694912|CYRIB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	426.884801	1277.63257	0.036587	1.5619E-05	-0.19131	-8.1669E-05	-0.15473	-6.605E-05	426.8844591467411	21.404	0.87205	21.475	21.155	22.028	0.071487	0.02649	-0.0011901	NaN	21.032	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201090	+		24265	24899	16683	16721							0.00486289251693961
IAPTKPQKLP	10	Unmodified	_IAPTKPQKLP_					0	0	0		ENST00000522092.5_2_8:772178-1087480:+|nuORF	ENST00000522092.5_2_8:772178-1087480:+|nuORF	ENST00000522092.5_2_8:772178-1087480:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.840087890625	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	1.0393	1	12716	12716		40.778	1.5253	1	11254000			24266	16021	16684	16722	28179	28179					0.12811168299458586
IAPTRASAL	9	Unmodified	_IAPTRASAL_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2693786621094	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.4752	1	3238	3238		60.972	7.6205	1	141320000	+		24267	26207	16685	16723	28180	28180					0.07029491134358068
IAQEICQEEV	10	Unmodified	_IAQEICQEEV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.8141479492188	2	581.276446	1160.53834	0.32596	0.00018947	1.5101	0.00087779	1.8361	0.0010673	581.2748860075941	20.146	0.43177	19.948	19.753	20.185	-0.19763					19	8	3	0	0	0	0.03519	1	489	489		49.442	8.6634	1	37631			24268	2008	16686	16724	28181	28181					-0.03550849570478931
IAQLSYHLL	9	Unmodified	_IAQLSYHLL_					0	0	0		ENST00000605778.1_1_7:35738158-35738266:+|nuORF	ENST00000605778.1_1_7:35738158-35738266:+|nuORF	ENST00000605778.1_1_7:35738158-35738266:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3036499023438	2	529.305667	1056.59678	-0.33517	-0.00017741	-3.7088	-0.0019631	-4.044	-0.0021405	529.3035779402041	31.317	0.72628	31.386	31.04	31.766	0.068962					52	17	5	0	0	0	0.62163	1	2041	2041		51.335	0.14276	1	1747400			24269	17558	16687	16725	28182	28182					0.0707461985698501
IAQPWHPQG	9	Unmodified	_IAQPWHPQG_					0	0	0		ENST00000258955.6_1_17:48562280-48562508:+|nuORF	ENST00000258955.6_1_17:48562280-48562508:+|nuORF	ENST00000258955.6_1_17:48562280-48562508:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.32470703125	2	517.264333	1032.51411	0.671	0.00034709	1.2256	0.00063394	1.8966	0.00098103	517.2648706834179	50.907	0.68041	50.726	50.462	51.143	-0.18071					32	17	2	0	0	0	0.024487	1	5173	5173		17.365	0	1	746190			24270	11430	16688	16726	28183	28183					-0.0008427715115431056
IAQVRPPP	8	Unmodified	_IAQVRPPP_					0	0	0			REV__ENST00000376955.8_1_17:43215336-43220144:+|nuORF	REV__ENST00000376955.8_1_17:43215336-43220144:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2663879394531	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	0.95417	1	4049	4049		44.531	3.9584	1	3361200	+		24271	31371	16689	16727	28184	28184					0.07493812342568162
IARDQLAIL	9	Unmodified	_IARDQLAIL_					0	0	0		ENSG00000153902|ENST00000310123|LGI4;ENST00000392225.7_1_19:35616099-35617731:-|nuORF;ENST00000587780.5_1_19:35616099-35616483:-|nuORF	ENSG00000153902|ENST00000310123|LGI4	ENSG00000153902|ENST00000310123|LGI4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8110046386719	2	506.811116	1011.60768	-0.18697	-9.4759E-05	-0.59738	-0.00030276	-0.78435	-0.00039752	506.8109227453703	54.675	1.2537	54.525	54.156	55.409	-0.15036					111	35	5	0	0	0	0.22754	1	5965	5965		85.359	5.9085	1	35785000			24272	6364	16690	16728	28185	28185					0.10234022231270501
IARDQLAIL	9	Unmodified	_IARDQLAIL_					0	0	0		ENSG00000153902|ENST00000310123|LGI4;ENST00000392225.7_1_19:35616099-35617731:-|nuORF;ENST00000587780.5_1_19:35616099-35616483:-|nuORF	ENSG00000153902|ENST00000310123|LGI4	ENSG00000153902|ENST00000310123|LGI4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8106384277344	2	506.811116	1011.60768	0.53467	0.00027098	-1.3459	-0.00068214	-0.81128	-0.00041116	506.81053479143134	54.415	1.2551	54.513	54.077	55.332	0.098011					114	35	5	0	0	0	0.4752	1	5884	5884		60.972	0	1	38735000			24273	6364	16690	16728	28186	28186					0.10234022231270501
IAREEASNF	9	Unmodified	_IAREEASNF_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000556321.1_1_14:58714534-58724570:+|nuORF;ENST00000555931.5_1_14:58714534-58727692:+|nuORF;ENST00000553665.5_1_14:58711638-58724717:+|nuORF;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7561645507812	2	518.756538	1035.49852	-0.58774	-0.00030489	0.60105	0.0003118	0.013304	6.9014E-06	518.756798305229	35.533	0.61227	35.317	35.062	35.674	-0.21556					47	15	4	0	0	0	0.087669	2	2695	2695;2720		114.89	6.8071	1	3921500			24274	2218	16691	16729	28187;28188	28187					-0.017806084588528392
IAREEASNF	9	Unmodified	_IAREEASNF_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000556321.1_1_14:58714534-58724570:+|nuORF;ENST00000555931.5_1_14:58714534-58727692:+|nuORF;ENST00000553665.5_1_14:58711638-58724717:+|nuORF;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7564086914062	2	518.756538	1035.49852	-0.23394	-0.00012136	0.14353	7.4457E-05	-0.090409	-4.69E-05	518.7565604263734	35.505	0.69364	35.293	34.924	35.618	-0.21246					49	17	4	0	0	0	0.027736	2	2698	2688;2698		143.37	35.286	1	3806300			24275	2218	16691	16729	28189;28190	28190					-0.017806084588528392
IAREEASNF	9	Unmodified	_IAREEASNF_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000556321.1_1_14:58714534-58724570:+|nuORF;ENST00000555931.5_1_14:58714534-58727692:+|nuORF;ENST00000553665.5_1_14:58711638-58724717:+|nuORF;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;ENST00000555743.1_1_14:58711638-58734239:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.7562255859375	2	518.756538	1035.49852	-0.39798	-0.00020646	0.26861	0.00013934	-0.12937	-6.7113E-05	518.7566025232576	35.403	0.60576	35.216	34.948	35.554	-0.18675					44	15	4	0	0	0	0.15388	2	2668	2668;2681		98.582	10.903	1	3973200			24276	2218	16691	16729	28191;28192	28191					-0.017806084588528392
IARFTLLPS	9	Unmodified	_IARFTLLPS_					0	0	0			REV__ENSG00000179142|ENST00000323110|CYP11B2	REV__ENSG00000179142|ENST00000323110|CYP11B2	MSMS	OPSCC_40_ClassI_Rep-3	6	509.3092956542969	2	509.30821	1016.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.604	1	83.465	82.965	83.965	-0.1386								0	0	0	0.29326	1	10082	10082		68.787	8.6686	1		+		24277	27242	16692	16730	28193	28193					0.09422923719614573
IARGHTEPD	9	Unmodified	_IARGHTEPD_					0	0	0		ENST00000486510.1_1_3:51981724-51982493:+|nuORF;ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENST00000486510.1_1_3:51981724-51982493:+|nuORF	ENST00000486510.1_1_3:51981724-51982493:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.27362060546875	2	498.24888	994.483208	-0.018827	-9.3807E-06	1.0632	0.00052976	1.0444	0.00052037	498.2494194890897	45.618	0.30397	45.618	45.342	45.646	0					14	8	2	0	0	0	0.024495	1	4449	4449		26.693	0	1	225640			24278	1073	16693	16731	28194	28194					-0.014254752560532324
IARGRRKP	8	Unmodified	_IARGRRKP_					0	0	0		ENST00000273920.7_1_4:83351753-83351975:+|nuORF	ENST00000273920.7_1_4:83351753-83351975:+|nuORF	ENST00000273920.7_1_4:83351753-83351975:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7735900878906	2	477.30941	952.604266	0.7103	0.00033903	2.1529	0.0010276	2.8632	0.0013666	477.3102845607102	69.472	0.82336	69.472	69.131	69.954	0					32	20	2	0	0	0	0.027866	1	8347	8347		33.516	6.7195	1	414900			24279	11675	16694	16732	28195	28195					0.12606816967934265
IARHIVNL	8	Unmodified	_IARHIVNL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH;REV__ENST00000433355.6_1_6:146231577-146267398:-|nuORF;REV__ENST00000519632.5_1_6:146239221-146248402:-|nuORF	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2586669921875	2	468.292894	934.571235	-0.58653	-0.00027467	-0.15056	-7.0507E-05	-0.73709	-0.00034517	468.2927207711002	44.742	0.66095	44.742	44.382	45.043	0					24	18	2	0	0	0	0.027866	1	4336	4336		42.474	10.52	1	118280	+		24280	24490;32400;34262	16695	16733	28196	28196					0.10133190125225155
IARISAATQV	10	Unmodified	_IARISAATQV_					0	0	0		ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.307861328125	2	515.306198	1028.59784	-1.0497	-0.00054093	3.7707	0.0019431	2.721	0.0014022	515.3079722876132	62.709	0.92925	62.709	62.335	63.265	0					33	18	2	0	0	0	0.83673	1	7302	7302		58.23	5.2932	1	5871200			24281	2621	16696	16734	28197	28197					0.08468834225868704
IARIVETHQ	9	Unmodified	_IARIVETHQ_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8052368164062	2	533.803823	1065.59309	-1.0778	-0.00057535	3.8646	0.0020629	2.7867	0.0014876	533.8059632694876	44.898	1.1267	44.898	44.519	45.646	0					122	32	5	0	0	0	0.43973	1	4357	4357		63.306	8.53	1	45576000			24282	2461	16697	16735	28198	28198					0.06291950083118536
IARIVETHQ	9	Unmodified	_IARIVETHQ_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8054809570312	2	533.803823	1065.59309	-1.1538	-0.00061591	3.9893	0.0021295	2.8355	0.0015136	533.8060234938253	45.067	1.1268	44.919	44.523	45.649	-0.1488					123	32	5	0	0	0	0.55828	1	4351	4351		55.504	2.5675	1	51243000			24283	2461	16697	16735	28199	28199					0.06291950083118536
IARLGSEA	8	Unmodified	_IARLGSEA_					0	0	0			REV__ENST00000319670.13_1_19:7460038-7506559:+|nuORF	REV__ENST00000319670.13_1_19:7460038-7506559:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.57012939453125	2	408.732335	815.450116	0.60817	0.00024858	-0.2727	-0.00011146	0.33547	0.00013712	408.73209861737763	32.1	0.92382	32.1	31.829	32.753	0					34	23	2	0	0	0	0.027866	1	2227	2227		30.504	0	1	376910	+		24284	30327	16698	16736	28200	28200					0.035009426919032194
IARLIEFH	8	Unmodified	_IARLIEFH_					0	0	0			REV__nc|ENSG00000169302|Q8WU08-3|STK32A	REV__nc|ENSG00000169302|Q8WU08-3|STK32A	MSMS	OPSCC_39_ClassI_Rep-3	3	499.7901306152344	2	499.792727	997.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.332	1	29.411	28.911	29.911	0.078344								0	0	0	0.81261	1	1740	1740		33.516	1.5607	1		+		24285	26351	16699	16737	28201	28201					0.07201770405367824
IARLPSSTL	9	Unmodified	_IARLPSSTL_					0	0	0		ENSG00000186185|ENST00000593135|KIF18B;nc|ENSG00000186185|Q86Y91-6|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2898254394531	2	479.290017	956.565481	0.27118	0.00012997	-0.63912	-0.00030632	-0.36794	-0.00017635	479.28964543442254	48.765	0.55635	48.765	48.482	49.039	0					50	15	4	0	0	0	0.03201	4	4983	4983;4993;5005;5019		139.97	26.559	1	9754700			24286	9524	16700	16738	28202;28203;28204;28205	28202					0.0854604682289164
IARLPSSTL	9	Unmodified	_IARLPSSTL_					0	0	0		ENSG00000186185|ENST00000593135|KIF18B;nc|ENSG00000186185|Q86Y91-6|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2901306152344	2	479.290017	956.565481	-0.14247	-6.8284E-05	-0.29595	-0.00014185	-0.43842	-0.00021013	479.28982191532117	48.965	0.50067	48.812	48.54	49.041	-0.15277					47	13	4	0	0	0	0.03201	4	4988	4988;4999;5012;5025		139.97	26.559	1	9617200			24287	9524	16700	16738	28206;28207;28208;28209	28206					0.0854604682289164
IARLPSSTL	9	Unmodified	_IARLPSSTL_					0	0	0		ENSG00000186185|ENST00000593135|KIF18B;nc|ENSG00000186185|Q86Y91-6|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2902526855469	2	479.290017	956.565481	-0.55834	-0.00026761	0.27626	0.00013241	-0.28208	-0.0001352	479.29007413321784	48.643	0.60136	48.709	48.378	48.979	0.066795					60	16	5	0	0	0	0.03201	4	4898	4898;4908;4921;4934		139.97	26.559	1	8925500			24288	9524	16700	16738	28210;28211;28212;28213	28210					0.0854604682289164
IARPICAL	8	Unmodified	_IARPICAL_					0	0	0			REV__TRIO-PPP2R5E|1|fusion	REV__TRIO-PPP2R5E|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.276611328125	2	428.757298	855.500044	-0.20322	-8.7133E-05	-3.0477	-0.0013067	-3.2509	-0.0013938	428.75584475193324	42.95	0.57721	42.724	42.374	42.951	-0.22597					21	14	2	0	0	0	0.027866	1	3921	3921		21.702	0	1	244110	+		24289	37730	16701	16739	28214	28214					0.06651354096197792
IARRGIDL	8	Unmodified	_IARRGIDL_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2825927734375	2	457.282526	912.550499	-0.35785	-0.00016364	-0.065891	-3.0131E-05	-0.42374	-0.00019377	457.2824904903936	34.734	1.387	34.784	34.441	35.828	0.050251					74	35	5	0	0	0	1.0239	1	2580	2580		33.516	1.5607	1	7974600	+		24290	28823	16702	16740	28215	28215					0.09072599745559273
IARVQLLAL	9	Unmodified	_IARVQLLAL_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.83197021484375	2	498.831852	995.649151	-0.23693	-0.00011819	0.16653	8.3073E-05	-0.070399	-3.5117E-05	498.8318162347858	44.37	0.96066	44.407	43.998	44.959	0.0369					79	27	4	0	0	0	0.43973	1	4189	4189		63.306	3.188	1	3923100	+		24291	25253	16703	16741	28216	28216					0.15115202990614307
IARVQLLAL	9	Unmodified	_IARVQLLAL_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.83160400390625	2	498.831852	995.649151	-1.2666	-0.00063182	0.22998	0.00011472	-1.0366	-0.0005171	498.83196788635445	44.558	1.0747	44.347	44.014	45.089	-0.21109					79	28	4	0	0	0	0.31247	1	4181	4181		73.975	1.3548	1	12668000	+		24292	25253	16703	16741	28217	28217					0.15115202990614307
IARVTNVEW	9	Unmodified	_IARVTNVEW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.297607421875	2	544.298373	1086.58219	-1.3574	-0.00073883	0.78309	0.00042623	-0.57432	-0.0003126	544.29893751033	53.812	0.62798	53.676	53.393	54.021	-0.13617					53	19	4	0	0	0	0.20652	2	5665	5665;5677		88.177	32.673	1	8732400			24293	2507	16704	16742	28218;28219	28218					0.042365477088424086
IARVTNVEW	9	Unmodified	_IARVTNVEW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.298828125	2	544.298373	1086.58219	-0.3144	-0.00017113	-0.60574	-0.0003297	-0.92014	-0.00050083	544.2977306192672	53.979	0.7775	53.734	53.421	54.198	-0.2453					59	24	4	0	0	0	0.15388	2	5689	5675;5689		98.582	2.7668	1	8800000			24294	2507	16704	16742	28220;28221	28221					0.042365477088424086
IARVTNVEW	9	Unmodified	_IARVTNVEW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.2979736328125	2	544.298373	1086.58219	-0.90133	-0.00049059	0.67616	0.00036803	-0.22517	-0.00012256	544.2987339390411	53.877	0.50223	53.68	53.387	53.889	-0.19739					48	15	4	0	0	0	0.22902	3	5677	5653;5664;5677		85.161	16.797	1	9155600			24295	2507	16704	16742	28222;28223;28224	28224					0.042365477088424086
IARWALLF	8	Unmodified	_IARWALLF_					0	0	0			REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.77178955078125	2	495.300188	988.585822	-0.31437	-0.00015571	-1.6324	-0.00080854	-1.9468	-0.00096424	495.2991129586777	22.532	0.28237	22.457	22.223	22.506	-0.075294					13	5	3	0	0	0	0.027866	1	784	784		29.842	3.0454	1	29866	+		24296	30112	16705	16743	28225	28225					0.09107262273380456
IARWALLF	8	Unmodified	_IARWALLF_					0	0	0			REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.300188	988.585822	-0.033282	-1.6484E-05	-1.7015	-0.00084277	-1.7348	-0.00085926	495.2993879820891	22.408	0.42117	22.408	22.198	22.619	0	-0.16276	0.0010342	NaN	29.842	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41852	+		24297	30112	16705	16743							0.09107262273380456
IARWALLF	8	Unmodified	_IARWALLF_					0	0	0			REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.300188	988.585822	-1.0245	-0.00050746	-3.1183	-0.0015445	-4.1428	-0.0020519	495.2977895430296	22.363	0.5292	22.437	21.981	22.51	0.073954	-0.13405	-0.00036918	NaN	29.842	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35125	+		24298	30112	16705	16743							0.09107262273380456
IARWALLF	8	Unmodified	_IARWALLF_					0	0	0			REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.300188	988.585822	-0.43625	-0.00021608	-3.3976	-0.0016828	-3.8338	-0.0018989	495.298268457902	22.946	0.23095	22.761	22.6	22.831	-0.18539	0.18976	-0.00064584	NaN	29.842	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25353	+		24299	30112	16705	16743							0.09107262273380456
IARWALLF	8	Unmodified	_IARWALLF_					0	0	0			REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	REV__ENST00000305188.12_2_8:27631997-27632063:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.300188	988.585822	1.0239	0.00050713	-4.6758	-0.0023159	-3.6519	-0.0018088	495.2974435766442	22.984	0.27899	22.793	22.572	22.851	-0.19117	0.22147	-0.0019121	NaN	29.842	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18413	+		24300	30112	16705	16743							0.09107262273380456
IARYMIGKI	9	Unmodified	_IARYMIGKI_					0	0	0			REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2256469726562	2	532.817887	1063.62122	-0.29602	-0.00015772	3.0133	0.0016056	2.7173	0.0014478	532.8193608177952	27.687	0.26056	27.445	27.335	27.596	-0.24217					7	5	2	0	0	0	0.024487	1	1564	1564		40.573	6.4001	1	37737	+		24301	21939	16706	16744	28226	28226					0.0919555673888226
IASCLNHNRGR	11	Unmodified	_IASCLNHNRGR_					0	0	0			REV__nc|ENSG00000196954|P49662-3|CASP4	REV__nc|ENSG00000196954|P49662-3|CASP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.2143249511719	3	414.215767	1239.62547	0.30197	0.00012508	-4.1265	-0.0017093	-3.8246	-0.0015842	414.2141460658926	24.339	1.0986	24.339	24.036	25.135	0					76	24	5	0	0	0	1.0408	1	1076	1076		27.644	0.89421	1	6486500	+		24302	34617	16707	16745	28227	28227					0.015244142144638317
IASDNVLII	9	Unmodified	_IASDNVLII_					0	0	0			REV__ENSG00000118434|ENST00000237201|SPACA1	REV__ENSG00000118434|ENST00000237201|SPACA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.28466796875	2	479.2844	956.554247	-0.19258	-9.2301E-05	0.60147	0.00028828	0.40889	0.00019597	479.28455219110884	90.081	1.5333	90.081	89.27	90.804	0					85	36	5	0	0	0	0.18915	2	11380	11380;11405		90.777	3.2778	1	1732000	+		24303	22404	16708	16746	28228;28229	28228					0.07423224728779587
IASDNVLII	9	Unmodified	_IASDNVLII_					0	0	0			REV__ENSG00000118434|ENST00000237201|SPACA1	REV__ENSG00000118434|ENST00000237201|SPACA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.28472900390625	2	479.2844	956.554247	0.35757	0.00017138	0.15027	7.2023E-05	0.50784	0.0002434	479.2842856885942	90.087	1.994	90.07	88.912	90.906	-0.016708					96	47	4	0	0	0	0.11848	1	11356	11356		106.42	1.6687	1	1691200	+		24304	22404	16708	16746	28230	28230					0.07423224728779587
IASDNVLII	9	Unmodified	_IASDNVLII_					0	0	0			REV__ENSG00000118434|ENST00000237201|SPACA1	REV__ENSG00000118434|ENST00000237201|SPACA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.28448486328125	2	479.2844	956.554247	0.2172	0.0001041	0.12711	6.0921E-05	0.34431	0.00016502	479.2843057015421	90.127	1.8221	90.14	89.089	90.911	0.013443					83	43	4	0	0	0	0.17455	1	11298	11298		94.006	0	1	1880000	+		24305	22404	16708	16746	28231	28231					0.07423224728779587
IASDNVLII	9	Unmodified	_IASDNVLII_					0	0	0			REV__ENSG00000118434|ENST00000237201|SPACA1	REV__ENSG00000118434|ENST00000237201|SPACA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	479.2844	956.554247	0.35757	0.00017138	0.15027	7.2023E-05	0.50784	0.0002434	479.2842856885942	90.087	1.994	90.07	88.912	90.906	-0.016708	-0.026927	-0.00012208	NaN	106.42	96	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1691200	+		24306	22404	16708	16746							0.07423224728779587
IASFFQFFG	9	Unmodified	_IASFFQFFG_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.26708984375	2	532.26601	1062.51747	-0.078493	-4.1779E-05	2.9102	0.001549	2.8317	0.0015072	532.2673143845813	71.551	0.71548	71.551	71.263	71.978	0					43	18	3	0	0	0	0.29104	1	8676	8676		76.847	0.072494	1	1150300			24307	10645	16709	16747	28232	28232					-0.01129027097135804
IASFFQFFG	9	Unmodified	_IASFFQFFG_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	532.26601	1062.51747	0.060839	3.2382E-05	2.7671	0.0014728	2.8279	0.0015052	532.2672844890931	71.88	0.67848	71.592	71.234	71.912	-0.28858	0.0064416	0.00011285	NaN	76.847	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308100			24308	10645	16709	16747							-0.01129027097135804
IASFFQFFG	9	Unmodified	_IASFFQFFG_					0	0	0		ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	ENSG00000223953|ENST00000528368|C1QTNF5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	532.26601	1062.51747	-0.043787	-2.3306E-05	2.556	0.0013605	2.5122	0.0013372	532.2673089624143	71.602	0.73943	71.613	71.319	72.059	0.010735	0.027733	-0.00011188	NaN	76.847	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1245300			24309	10645	16709	16747							-0.01129027097135804
IASGGTHSR	9	Unmodified	_IASGGTHSR_					0	0	0		ENST00000586314.5_1_18:31432808-31708839:-|nuORF;nc|ENSG00000101746|O94818-2|NOL4;nc|ENSG00000101746|O94818-3|NOL4;ENSG00000101746|ENST00000261592|NOL4	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2588806152344	2	443.230491	884.446428	-0.12381	-5.4877E-05	0.25896	0.00011478	0.13515	5.9904E-05	443.23044872027464	23.584	0.39013	23.66	23.476	23.866	0.076239					11	8	2	0	0	0	0.024436	1	877	877		47.916	34.14	1	72317			24310	2345	16710	16748	28233	28233					-0.0004172708194118968
IASGTRLSIP	10	Unmodified	_IASGTRLSIP_					0	0	0		nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;nc|ENSG00000105483|Q9Y2G2-3|CARD8;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8	nc|ENSG00000105483|Q9Y2G2-2|CARD8	nc|ENSG00000105483|Q9Y2G2-2|CARD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7989196777344	2	507.800749	1013.58694	0.33384	0.00016952	-1.4898	-0.00075652	-1.156	-0.00058699	507.799918072656	58.769	1.4002	58.769	58.159	59.559	0					92	37	3	0	0	0	0.61732	1	6653	6653		75.043	7.5496	1	15031000			24311	2682	16711	16749	28234	28234					0.0806943185162936
IASKPQQR	8	Unmodified	_IASKPQQR_					0	0	0			REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2722473144531	2	464.272158	926.529764	-0.11763	-5.4612E-05	-0.53979	-0.00025061	-0.65742	-0.00030522	464.27202017286174	19.59	0.96406	19.471	19.2	20.164	-0.11872					57	19	5	0	0	0	0.91239	1	439	439		50.025	2.1089	1	6839000	+		24312	32720	16712	16750	28235	28235					0.06356009365902082
IASKQKQIP	9	Unmodified	_IASKQKQIP_					0	0	0		nc|ENSG00000173421|Q8IYA8-2|IHO1;ENSG00000173421|ENST00000452691|IHO1	nc|ENSG00000173421|Q8IYA8-2|IHO1	nc|ENSG00000173421|Q8IYA8-2|IHO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.76788330078125	2	506.811116	1011.60768	-1.0306	-0.0005223	1.4439	0.00073177	0.4133	0.00020946	506.8117896078571	61.041	0.60742	60.865	60.597	61.205	-0.1761					23	14	3	0	0	0	0.024323	1	6812	6812		44.117	0	1	253260			24313	8373	16713	16751	28236	28236					0.10234022231293238
IASKRAKLA	9	Unmodified	_IASKRAKLA_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2772521972656	2	479.313826	956.613099	-0.19469	-9.3319E-05	0.21116	0.00010121	0.016473	7.8956E-06	479.31371607486	21.108	0.77895	21.018	20.72	21.499	-0.090092					29	15	3	0	0	0	0.022756	1	646	646		68.787	12.066	1	89177	+		24314	23640	16714	16752	28237	28237					0.13305745813750036
IASKRAKLA	9	Unmodified	_IASKRAKLA_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.313826	956.613099	-0.42699	-0.00020466	0.37596	0.0001802	-0.051022	-2.4456E-05	479.3138514178556	20.943	0.53928	20.943	20.656	21.195	0	-0.063045	0.0002092	NaN	68.787	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77876	+		24315	23640	16714	16752							0.13305745813750036
IASPTLKLEL	10	Unmodified	_IASPTLKLEL_					0	0	0			REV__ENSG00000128655|ENST00000286063|PDE11A	REV__ENSG00000128655|ENST00000286063|PDE11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.8346557617188	2	542.834257	1083.65396	-0.82811	-0.00044953	1.6869	0.00091571	0.85879	0.00046618	542.8350680009022	70.503	0.45464	70.516	70.272	70.727	0.012421					30	10	4	0	0	0	0.61732	1	8452	8452		75.043	0.78827	1	2522800	+		24316	23004	16715	16753	28238	28238					0.11548042342701592
IASREQEVQ	9	Unmodified	_IASREQEVQ_					0	0	0		ENSG00000118898|ENST00000345988|PPL;ENST00000589090.1_1_16:4938789-4940274:-|nuORF	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3116455078125	2	530.275095	1058.53564	-0.71517	-0.00037924	2.2948	0.0012169	1.5796	0.00083764	530.275909921805	60.755	0.3284	60.502	60.294	60.623	-0.25374					11	7	2	0	0	0	0.024381	1	6762	6762		37.159	0	1	105280			24317	3707	16716	16754	28239	28239					0.008710630869245506
IASVSLPLMA	10	Unmodified	_IASVSLPLMA_					0	0	0			REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2904052734375	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	1.0665	1	10888	10888		37.159	2.9866	1	8460100	+		24318	36308	16717	16755	28240	28240					0.06244455373735036
IASVSLPLMA	10	Unmodified	_IASVSLPLMA_					0	0	0			REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2901611328125	2	501.288628	1000.5627	-0.55827	-0.00027985	4.2822	0.0021466	3.7239	0.0018667	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	1.0781	1	10404	10404		35.618	0	1	2156900	+		24319	36308	16717	16755	28241	28241					0.06244455373735036
IASVSLPLMA	10	Unmodified	_IASVSLPLMA_					0	0	0			REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2902526855469	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.1329	1	10489	10489		27.882	0	1	10557000	+		24320	36308	16717	16755	28242	28242					0.06244455373735036
IASVSLPLMA	10	Unmodified	_IASVSLPLMA_					0	0	0			REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	REV__LHCGR|p.V503Sfs*7|1|0.26|ENSG00000138039|chr2:48688293-48688293|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29022216796875	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0271	2	10562	10338;10562		42.396	4.5846	1	10074000	+		24321	36308	16717	16755	28243;28244	28244					0.06244455373735036
IATGRATEAV	10	Unmodified	_IATGRATEAV_					0	0	0		ENST00000402703.6_1_14:37131094-37132119:+|nuORF	ENST00000402703.6_1_14:37131094-37132119:+|nuORF	ENST00000402703.6_1_14:37131094-37132119:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7759704589844	2	494.774731	987.534909	0.73295	0.00036264	2.9126	0.0014411	3.6455	0.0018037	494.77624578358973	60.047	0.83714	60.047	59.745	60.582	0					57	22	4	0	0	0	0.45418	1	6909	6909		93.143	10.838	1	5851300			24322	13688	16718	16756	28245	28245					0.040642684378553895
IATHPLDVQ	9	Unmodified	_IATHPLDVQ_					0	0	0			REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2970886230469	2	497.271824	992.529095	0.40315	0.00020047	-1.1879	-0.00059069	-0.78471	-0.00039022	497.27109324385805	69.379	0.45177	69.086	68.86	69.312	-0.29291					17	11	2	0	0	0	0.024292	1	8329	8329		49.442	5.3247	1	277840	+		24323	22304	16719	16757	28246	28246					0.03253169926188093
IATLLLAKN	9	Unmodified	_IATLLLAKN_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000125533|Q8NDY6|BHLHE23;ENSG00000125533|ENST00000612929|BHLHE23	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2635803222656	2	478.810585	955.606617	-1.3748	-0.00065825	-2.381	-0.00114	-3.7557	-0.0017983	478.8088786184942	38.585	0.49787	38.612	38.462	38.96	0.027279					17	12	2	0	0	0	0.024477	1	3245	3245		44.117	13.799	1	101850			24324	9001	16720	16758	28247	28247					0.12703807862374106
IATLLLAKN	9	Unmodified	_IATLLLAKN_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000125533|Q8NDY6|BHLHE23;ENSG00000125533|ENST00000612929|BHLHE23	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.810585	955.606617	-0.39203	-0.00018771	-4.1495	-0.0019868	-4.5415	-0.0021745	478.8081643719891	38.279	0.44045	38.279	38.199	38.639	0	-0.050275	-0.0038344	NaN	44.117	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88059			24325	9001	16720	16758							0.12703807862374106
IATLLLAKN	9	Unmodified	_IATLLLAKN_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000125533|Q8NDY6|BHLHE23;ENSG00000125533|ENST00000612929|BHLHE23	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.810585	955.606617	-0.46659	-0.00022341	-3.4403	-0.0016472	-3.9068	-0.0018706	478.8083447104675	38.34	0.29848	38.257	38.116	38.414	-0.082512	-0.072565	-0.0031552	NaN	44.117	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73540			24326	9001	16720	16758							0.12703807862374106
IATLLLAKN	9	Unmodified	_IATLLLAKN_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000125533|Q8NDY6|BHLHE23;ENSG00000125533|ENST00000612929|BHLHE23	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.810585	955.606617	-0.49884	-0.00023885	1.4403	0.00068964	0.94147	0.00045079	478.8109371502989	38.433	0.24065	38.254	38.102	38.342	-0.17929	-0.075528	0.0015185	NaN	44.117	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80971			24327	9001	16720	16758							0.12703807862374106
IATLLLAKN	9	Unmodified	_IATLLLAKN_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000125533|Q8NDY6|BHLHE23;ENSG00000125533|ENST00000612929|BHLHE23	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.810585	955.606617	-0.7934	-0.00037989	1.4989	0.00071768	0.70548	0.00033779	478.81126486035953	38.525	0.29805	38.304	38.119	38.417	-0.22149	-0.025776	0.0015746	NaN	44.117	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70596			24328	9001	16720	16758							0.12703807862374106
IATLLLAKN	9	Unmodified	_IATLLLAKN_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000125533|Q8NDY6|BHLHE23;ENSG00000125533|ENST00000612929|BHLHE23	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.810585	955.606617	-0.17031	-8.1547E-05	0.73764	0.00035319	0.56733	0.00027164	478.81102326731747	38.49	0.25918	38.271	38.15	38.409	-0.21848	-0.058363	0.00084563	NaN	44.117	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111100			24329	9001	16720	16758							0.12703807862374106
IATLRVALP	9	Unmodified	_IATLRVALP_					0	0	0		ENST00000394321.9_1_19:7591427-7598678:+|nuORF;ENSG00000090674|ENST00000264079|MCOLN1	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7738952636719	2	477.310752	952.606951	0.9828	0.0004691	-0.98895	-0.00047204	-0.0061492	-2.9351E-06	477.3101745315641	69.793	0.71784	69.5	69.202	69.92	-0.29291					30	17	2	0	0	0	0.024374	1	8367	8367		40.778	0	1	457660			24330	13485	16721	16759	28248	28248					0.12875227582219395
IATLRVALP	9	Unmodified	_IATLRVALP_					0	0	0		ENST00000394321.9_1_19:7591427-7598678:+|nuORF;ENSG00000090674|ENST00000264079|MCOLN1	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.77374267578125	2	477.310752	952.606951	-0.2291	-0.00010935	0.1572	7.5034E-05	-0.071895	-3.4316E-05	477.3106876210892	69.539	0.74603	69.554	69.209	69.955	0.015129					32	18	2	0	0	0	0.024374	1	8262	8262		49.442	3.4896	1	436630			24331	13485	16721	16759	28249	28249					0.12875227582219395
IATPGTRLA	9	Unmodified	_IATPGTRLA_					0	0	0		nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A;ENST00000527753.5_1_11:45959861-45986961:-|nuORF;ENST00000527401.5_1_11:45957138-45987102:-|nuORF	nc|ENSG00000135365|Q96BD5-2|PHF21A	nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.26910400390625	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.4752	1	3187	3187		60.972	2.19	1	125590000			24332	4885	16722	16760	28250	28250					0.07029491134369437
IATPIPASL	9	Unmodified	_IATPIPASL_					0	0	0			REV__ENST00000505061.5_1_15:42105116-42107966:+|nuORF	REV__ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7681579589844	2	441.768386	881.522219	0.14561	6.4327E-05	-1.2505	-0.00055245	-1.1049	-0.00048812	441.76790990667746	102.78	1.6063	102.79	102.46	104.06	0.0054169					106	40	5	0	0	0	0.98697	1	13199	13199		23.042	1.0826	1	27080000	+		24333	33998	16723	16761	28251	28251					0.07671857045602337
IATQENAQF	9	Unmodified	_IATQENAQF_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7724304199219	2	511.251089	1020.48762	-0.59845	-0.00030596	3.8209	0.0019534	3.2224	0.0016475	511.25272385915224	31.849	0.67416	31.849	31.549	32.224	0					35	16	3	0	0	0	0.024209	1	2138	2138		39.253	1.4413	1	980850		+	24334	556	16724	16762	28252	28252					-0.021800108331490264
IATQENAQF	9	Unmodified	_IATQENAQF_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.251089	1020.48762	-0.54702	-0.00027967	3.7577	0.0019211	3.2107	0.0016415	511.25268727755673	31.446	0.71925	31.515	31.248	31.967	0.068962	-0.21819	0.00027508	NaN	52.937	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	887380		+	24335	556	16724	16762							-0.021800108331490264
IATTGEANEL	10	Unmodified	_IATTGEANEL_					0	0	0		nc|ENSG00000104755|Q99965-2|ADAM2;ENSG00000104755|ENST00000265708|ADAM2	nc|ENSG00000104755|Q99965-2|ADAM2	nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2907409667969	2	509.756204	1017.49785	-0.36604	-0.00018659	0.3898	0.0001987	0.023758	1.2111E-05	509.75618835924934	57.416	0.41821	57.416	57.148	57.567	0					17	10	2	0	0	0	0.03519	1	6473	6473		72.879	30.405	1	369090			24336	2594	16725	16763	28253	28253					-0.010194478985795286
IAVAAFFLA	9	Unmodified	_IAVAAFFLA_					0	0	0			REV__ENST00000583631.1_1_17:26890919-26898285:-|nuORF	REV__ENST00000583631.1_1_17:26890919-26898285:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.7737121582031	2	461.773471	921.53239	0.44825	0.00020699	-0.78651	-0.00036319	-0.33826	-0.0001562	461.7731441179029	101.84	0.77296	101.71	101.45	102.23	-0.13156					46	18	4	0	0	0	0.80342	1	12636	12636		39.021	3.8208	1	575760	+		24337	20788	16726	16764	28254	28254					0.06848464770837381
IAVAAFFLA	9	Unmodified	_IAVAAFFLA_					0	0	0			REV__ENST00000583631.1_1_17:26890919-26898285:-|nuORF	REV__ENST00000583631.1_1_17:26890919-26898285:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.77337646484375	2	461.773471	921.53239	0.17835	8.2356E-05	-0.35901	-0.00016578	-0.18066	-8.3425E-05	461.7732035959884	101.83	0.7794	101.7	101.41	102.19	-0.12666					39	19	4	0	0	0	0.48384	2	12669	12649;12669		60.404	2.5924	1	870050	+		24338	20788	16726	16764	28255;28256	28256					0.06848464770837381
IAVAAFFLA	9	Unmodified	_IAVAAFFLA_					0	0	0			REV__ENST00000583631.1_1_17:26890919-26898285:-|nuORF	REV__ENST00000583631.1_1_17:26890919-26898285:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.7731628417969	2	461.773471	921.53239	0.22097	0.00010204	-0.38092	-0.0001759	-0.15996	-7.3864E-05	461.77316980394227	101.93	0.68788	101.76	101.52	102.2	-0.17178					32	16	3	0	0	0	0.65391	2	12630	12630;12653		49.211	6.7363	1	1028600	+		24339	20788	16726	16764	28257;28258	28257					0.06848464770837381
IAVAWEVI	8	Unmodified	_IAVAWEVI_					0	0	0		ENST00000503561.7_1_5:50057675-50130728:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.28173828125	2	450.763104	899.511654	-1.1905	-0.00053663	-3.574	-0.001611	-4.7645	-0.0021476	450.7613275769256	65.124	0.45236	64.861	64.613	65.065	-0.2626					15	11	2	0	0	0	0.027866	1	7635	7635		14.664	0	1	82412			24340	6239	16727	16765	28259	28259					0.057878743911942365
IAVAWEVI	8	Unmodified	_IAVAWEVI_					0	0	0		ENST00000503561.7_1_5:50057675-50130728:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	450.763104	899.511654	-0.50483	-0.00022756	-3.8967	-0.0017565	-4.4015	-0.001984	450.7612174980514	64.777	0.3732	64.814	64.707	65.081	0.037384	-0.023471	-9.6153E-05	NaN	8.8223	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88051			24341	6239	16727	16765							0.057878743911942365
IAVDISPVES	10	Unmodified	_IAVDISPVES_					0	0	0		ENST00000462381.1_1_7:73151257-73151715:-|nuORF;nc|ENSG00000106077|Q8NFV4-4|ABHD11;ENSG00000106077|ENST00000222800|ABHD11	ENST00000462381.1_1_7:73151257-73151715:-|nuORF	ENST00000462381.1_1_7:73151257-73151715:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2944946289062	2	515.276772	1028.53899	-0.13207	-6.8051E-05	0.34077	0.00017559	0.20871	0.00010754	515.2768220108434	53.778	0.54667	53.533	53.199	53.746	-0.2453					26	15	2	0	0	0	0.03519	1	5681	5681		35.618	8.9254	1	629820			24342	2757	16728	16766	28260	28260					0.02586313140909624
IAVEIPNL	8	Unmodified	_IAVEIPNL_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9;REV__ENSG00000135905|ENST00000258390|DOCK10	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7479553222656	2	434.760561	867.506569	0.17829	7.7511E-05	-2.4157	-0.0010502	-2.2374	-0.00097273	434.75954264157866	65.334	0.5915	65.372	64.967	65.559	0.037384					23	16	2	0	0	0	0.027866	1	7686	7686		84.916	23.944	1	626880	+		24343	36494;23592	16729	16767	28261	28261					0.06751570528570028
IAVGGGPPQS	10	Unmodified	_IAVGGGPPQS_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78802490234375	2	441.737617	881.460681	0.16316	7.2072E-05	0.23152	0.00010227	0.39467	0.00017434	441.7376597980168	42.657	1.4149	42.518	41.978	43.393	-0.13929					68	39	3	0	0	0	0.03519	1	4009	4009		47.657	3.5405	1	900470			24344	127;9786	16730	16768	28262	28262					0.015209253463240202
IAVGGGPPQS	10	Unmodified	_IAVGGGPPQS_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7880554199219	2	441.737617	881.460681	0.16618	7.3406E-05	-0.10152	-4.4847E-05	0.064651	2.8559E-05	441.7374848754426	41.665	0.93071	41.688	41.219	42.149	0.023006					40	26	2	0	0	0	0.03519	1	3641	3641		37.159	18.835	1	423170			24345	127;9786	16730	16768	28263	28263					0.015209253463240202
IAVGGGPPQS	10	Unmodified	_IAVGGGPPQS_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.737617	881.460681	-0.028018	-1.2377E-05	0.35229	0.00015562	0.32427	0.00014324	441.73767352249655	41.702	0.80707	41.57	41.146	41.953	-0.13219	-0.045793	0.00017349	NaN	37.159	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470330			24346	127;9786	16730	16768							0.015209253463240202
IAVGGGPPQS	10	Unmodified	_IAVGGGPPQS_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.737617	881.460681	-0.47169	-0.00020836	0.27349	0.00012081	-0.1982	-8.7554E-05	441.7379253346093	41.821	0.32863	41.589	41.508	41.837	-0.23186	-0.026506	0.00010387	NaN	37.159	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70852			24347	127;9786	16730	16768							0.015209253463240202
IAVGGYKVT	9	Unmodified	_IAVGGYKVT_					0	0	0		ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000164951|ENST00000297598|PDP1	ENSG00000164951|ENST00000297598|PDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2611999511719	2	454.26601	906.517468	-0.45482	-0.00020661	0.048851	2.2191E-05	-0.40597	-0.00018442	454.26589398672365	29.119	0.51808	28.947	28.766	29.284	-0.17258					20	11	2	0	0	0	0.024386	1	1767	1767		33.516	3.0119	1	651840			24348	7348	16731	16769	28264	28264					0.06046972902856851
IAVHKTQI	8	Unmodified	_IAVHKTQI_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.74566650390625	2	455.279452	908.544351	0.0018783	8.5515E-07	-1.033	-0.00047031	-1.0311	-0.00046946	455.2787647799742	54.378	0.71732	54.378	54.076	54.794	0					43	20	3	0	0	0	0.027866	1	5903	5903		53.351	21.397	1	1296700	+		24349	23902	16732	16770	28265	28265					0.08642081514040001
IAVISLYS	8	Unmodified	_IAVISLYS_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2557067871094	2	433.255111	864.49567	0.082102	3.5571E-05	-1.5381	-0.00066638	-1.456	-0.00063081	433.25533421616046	102.79	2.2075	102.8	102.41	104.62	0.0054245					176	55	6	0	0	0	1.0017	1	13160	13160		37.028	0	1	219000000	+		24350	22342	16733	16771	28266	28266					0.05800168154280527
IAVISLYS	8	Unmodified	_IAVISLYS_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.255126953125	2	433.255111	864.49567	0.5502	0.00023838	-0.69107	-0.00029941	-0.14087	-6.1032E-05	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	0.94001	2	13132	13132;13144		46.766	0	1	237570000	+		24351	22342	16733	16771	28267;28268	28267					0.05800168154280527
IAVISLYS	8	Unmodified	_IAVISLYS_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.2556457519531	2	433.255111	864.49567	0.068768	2.9794E-05	-0.16359	-7.0878E-05	-0.094827	-4.1084E-05	433.25539260258705	102.94	2.6221	102.81	102.45	105.08	-0.12783					130	72	2	0	0	0	0.85409	3	12907	12809;12876;12907		54.765	10.234	1	236480000	+		24352	22342	16733	16771	28269;28270;28271	28271					0.05800168154280527
IAVISLYS	8	Unmodified	_IAVISLYS_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2552490234375	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.36	1	103.19	102.69	103.69	-0.17034								0	0	0	0.5067	1	12842	12842		54.765	0	1		+		24353	22342	16733	16771	28272	28272					0.05800168154280527
IAVISLYS	8	Unmodified	_IAVISLYS_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2552795410156	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.44	1	103.26	102.76	103.76	-0.17034								0	0	0	0.6544	1	12851	12851		44.531	2.0566	1		+		24354	22342	16733	16771	28273	28273					0.05800168154280527
IAVISLYS	8	Unmodified	_IAVISLYS_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2550964355469	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.61	1	103.44	102.94	103.94	-0.1692								0	0	0	0.47325	1	12873	12873		57.453	0	1		+		24355	22342	16733	16771	28274	28274					0.05800168154280527
IAVISLYS	8	Unmodified	_IAVISLYS_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MSMS	OPSCC_40_ClassI_Rep-3	6	433.25506591796875	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.76	1	103.6	103.1	104.1	-0.16791								0	0	0	0.5067	1	12893	12893		54.765	10.234	1		+		24356	22342	16733	16771	28275	28275					0.05800168154280527
IAVISMKLL	9	Unmodified	_IAVISMKLL_					0	0	0		ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.30096435546875	2	494.317189	986.619824	0.82135	0.00040601	3.0405	0.001503	3.8618	0.001909	494.31835229713585	96.219	0.53839	96.096	95.813	96.352	-0.12305					19	12	3	0	0	0	0.024539	1	11913	11913		27.882	5.9224	1	239730			24357	14380	16734	16772	28276	28276					0.12597922650115834
IAVKPTMMS	9	Unmodified	_IAVKPTMMS_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.26397705078125	2	489.261556	976.508559	3.3431	0.0016356	0.63519	0.00031078	3.9782	0.0019464	489.2617385935617	18.641	1.6967	18.704	18.222	19.918	0.063307					66	34	3	0	0	0	0.83071	1	288	288		37.159	1.9584	1	181340			24358	11038	16735	16773	28277	28277					0.01936539950520455
IAVLGAVSIR	10	Unmodified	_IAVLGAVSIR_					0	0	0			REV__ENST00000423307.1_1_22:24305968-24306474:+|nuORF	REV__ENST00000423307.1_1_22:24305968-24306474:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.821044921875	2	499.821484	997.628415	0.21899	0.00010945	0.010212	5.1041E-06	0.2292	0.00011456	499.8213930533353	67.489	1.0613	67.489	66.926	67.987	0					54	26	3	0	0	0	1.0508	1	8053	8053		39.253	3.6345	1	1532400	+		24359	32215	16736	16774	28278	28278					0.1295061261093906
IAVLMCRGK	9	Unmodified	_IAVLMCRGK_					0	0	0		ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2914733886719	2	495.78299	989.551427	0.23423	0.00011613	2.8239	0.0014001	3.0582	0.0015162	495.7835385053188	18.525	0.3469	18.321	18.113	18.46	-0.20371					10	6	2	0	0	0	0.024541	1	318	318		18.324	11.131	1	13735			24360	6159	16737	16775	28279	28279					0.05623354798603941
IAVLSRLAYIF	11	Unmodified	_IAVLSRLAYIF_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.59307861328125	3	422.592058	1264.75434	0.31209	0.00013189	1.4914	0.00063026	1.8035	0.00076215	422.59259397297745	49.759	3.148	49.654	48.913	52.061	-0.10558					256	83	5	0	0	0	0.99129	1	4993	4993		38.754	9.2029	1	11811000			24361	948	16738	16776	28280	28280					0.13255699396358978
IAVNIKDP	8	Unmodified	_IAVNIKDP_					0	0	0		nc|ENSG00000175600|Q9HAC7-4|SUGCT;nc|ENSG00000175600|Q9HAC7-2|SUGCT;ENSG00000175600|ENST00000335693|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.29473876953125	2	435.258185	868.501818	1.2861	0.00055978	2.1228	0.00092397	3.4089	0.0014838	435.2581472941687	59.92	0.66037	59.92	59.52	60.181	0					35	17	3	0	0	0	0.027866	1	6803	6803		63.306	0	1	218660			24362	8576	16739	16777	28281	28281					0.06230686385811168
IAVNIKDP	8	Unmodified	_IAVNIKDP_					0	0	0		nc|ENSG00000175600|Q9HAC7-4|SUGCT;nc|ENSG00000175600|Q9HAC7-2|SUGCT;ENSG00000175600|ENST00000335693|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2950744628906	2	435.258185	868.501818	-0.1717	-7.4735E-05	3.9531	0.0017206	3.7814	0.0016459	435.2587864659649	59.77	0.70842	59.855	59.5	60.209	0.084671					32	18	3	0	0	0	0.027866	1	6713	6713		44.117	6.9577	1	190000			24363	8576	16739	16777	28282	28282					0.06230686385811168
IAVPRNDEW	9	Unmodified	_IAVPRNDEW_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2796630859375	2	550.28018	1098.54581	0.049531	2.7256E-05	0.14086	7.7512E-05	0.19039	0.00010477	550.2801026871504	52.938	0.62896	52.811	52.552	53.181	-0.12706					43	15	4	0	0	0	0.19099	2	5514	5514;5526		90.37	29.45	1	2087600			24364	1610	16740	16778	28283;28284	28283					0.0004767081213685742
IAVPRNDEW	9	Unmodified	_IAVPRNDEW_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.2800903320312	2	550.28018	1098.54581	0.35065	0.00019296	-0.55712	-0.00030657	-0.20647	-0.00011361	550.2797100326031	53.16	0.76707	52.902	52.603	53.37	-0.25838					53	19	4	0	0	0	0.15366	3	5556	5533;5542;5556		98.629	38.699	1	3139500			24365	1610	16740	16778	28285;28286;28287	28287					0.0004767081213685742
IAVPRNDEW	9	Unmodified	_IAVPRNDEW_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2803955078125	2	550.28018	1098.54581	-0.0802	-4.4132E-05	-0.21952	-0.0001208	-0.29972	-0.00016493	550.2799112098971	53.023	0.99367	52.833	52.47	53.463	-0.18982					55	25	4	0	0	0	0.077175	3	5514	5514;5525;5538		118.74	38.804	1	4044000			24366	1610	16740	16778	28288;28289;28290	28288					0.0004767081213685742
IAVQFATQS	9	Unmodified	_IAVQFATQS_					0	0	0			REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.74761962890625	2	482.758549	963.502546	0.21544	0.00010401	-0.48418	-0.00023374	-0.26874	-0.00012974	482.7584523977129	58.658	1.0827	58.471	58.03	59.113	-0.18705					58	29	3	0	0	0	0.024539	1	6655	6655		27.882	8.7787	1	1548300	+		24367	37168	16741	16779	28291	28291					0.019334810348709652
IAVQFATQS	9	Unmodified	_IAVQFATQS_					0	0	0			REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.758549	963.502546	0.50507	0.00024382	-0.64965	-0.00031362	-0.14458	-6.9798E-05	482.75832944381693	58.471	0.91358	58.471	57.91	58.823	0	0.0037349	-0.00039259	NaN	20.947	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1638000	+		24368	37168	16741	16779							0.019334810348709652
IAVQMMKRI	9	Unmodified	_IAVQMMKRI_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3184204101562	2	545.317197	1088.61984	-0.86422	-0.00047127	2.9315	0.0015986	2.0673	0.0011273	545.3187628812475	81.713	0.89104	81.582	81.298	82.189	-0.13075					62	21	4	0	0	0	0.78069	1	10183	10183		40.573	1.3198	1	2537000			24369	9038	16742	16780	28292	28292					0.07907599378472696
IAVQSNQQ	8	Unmodified	_IAVQSNQQ_					0	0	0		INTS7|p.N823S|1|0.3|ENSG00000143493|chr1:211944917-211944917|T/C|missense_variant	INTS7|p.N823S|1|0.3|ENSG00000143493|chr1:211944917-211944917|T/C|missense_variant	INTS7|p.N823S|1|0.3|ENSG00000143493|chr1:211944917-211944917|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.2685852050781	2	444.232699	886.450845	-0.92833	-0.0004124	-1.7281	-0.00076767	-2.6564	-0.0011801	444.23318858356777	28.721	0.87774	28.721	28.113	28.99	0					27	20	2	0	0	0	0.027866	1	1701	1701		33.516	5.6333	1	158660			24370	17773	16743	16781	28293	28293					0.003077373409610118
IAVSATRGSAL	11	Unmodified	_IAVSATRGSAL_					0	0	0		ENST00000480321.1_1_13:113699393-113699726:+|nuORF	ENST00000480321.1_1_13:113699393-113699726:+|nuORF	ENST00000480321.1_1_13:113699393-113699726:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3038940429688	2	523.303655	1044.59276	0.13302	6.9608E-05	-1.6088	-0.00084187	-1.4758	-0.00077227	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.97926	1	11158	11158		41.427	0.64845	1	10615000			24371	15194	16744	16782	28294	28294					0.07224530363282611
IAVSCGIPK	9	Carbamidomethyl (C)	_IAVSC(Carbamidomethyl (C))GIPK_	IAVSC(1)GIPK		IAVSC(63)GIPK		0	1	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7640075683594	2	472.76532	943.516088	0.36478	0.00017245	-2.1393	-0.0010114	-1.7745	-0.00083892	472.7639525258141	101.92	0.6331	101.93	101.69	102.33	0.0073471					30	14	3	0	0	0	0.43973	1	13025	13025		63.306	7.8021	1	344940	+		24372	25541	16745	16783	28295	28295	337				0.042070155424539735
IAVSCGIPK	9	Carbamidomethyl (C)	_IAVSC(Carbamidomethyl (C))GIPK_					0	1	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.76532	943.516088	0.38653	0.00018274	-2.5721	-0.001216	-2.1855	-0.0010332	472.76385146532147	102.02	0.70612	102.02	101.68	102.39	0	0.12254	-0.00015129	NaN	63.306	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352290	+		24373	25541	16745	16783			337				0.042070155424539735
IAVSCGIPK	9	Carbamidomethyl (C)	_IAVSC(Carbamidomethyl (C))GIPK_					0	1	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	472.76532	943.516088	0.36478	0.00017245	-2.1393	-0.0010114	-1.7745	-0.00083892	472.7639525258141	101.92	0.6331	101.93	101.69	102.33	0.0073471	0.036967	0.00025792	NaN	63.306	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344940	+		24374	25541	16745	16783			337				0.042070155424539735
IAVSCGIPK	9	Carbamidomethyl (C)	_IAVSC(Carbamidomethyl (C))GIPK_					0	1	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	472.76532	943.516088	0.64078	0.00030294	-2.5401	-0.0012009	-1.8993	-0.00089792	472.7638186789031	102.02	0.52725	102.02	101.8	102.33	-0.0054474	0.12342	-0.00012105	NaN	63.306	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327920	+		24375	25541	16745	16783			337				0.042070155424539735
IAVSCGIPK	9	Carbamidomethyl (C)	_IAVSC(Carbamidomethyl (C))GIPK_					0	1	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	472.76532	943.516088	0.023423	1.1073E-05	-2.2862	-0.0010808	-2.2628	-0.0010698	472.764025159419	101.93	0.53195	101.76	101.52	102.05	-0.17178	-0.13122	0.000119	NaN	63.306	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200550	+		24376	25541	16745	16783			337				0.042070155424539735
IAVSLDFAMV	10	Unmodified	_IAVSLDFAMV_					0	0	0			REV__ENSG00000280236|ENST00000642051|OR12D2	REV__ENSG00000280236|ENST00000642051|OR12D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7567749023438	2	533.286085	1064.55762	-0.21854	-0.00011654	-3.5822	-0.0019103	-3.8007	-0.0020269	533.2843279546335	58.769	1.047	58.588	58.065	59.112	-0.18134					63	25	4	0	0	0	0.03519	1	6523	6523		49.442	8.8689	1	1929400	+		24377	29236	16746	16784	28296	28296					0.02792151511107477
IAVTVRSH	8	Unmodified	_IAVTVRSH_					0	0	0			REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF	REV__ENST00000476824.1_1_2:182363351-182392165:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78802490234375	2	441.761426	881.5083	-0.097267	-4.2969E-05	-1.1138	-0.00049201	-1.211	-0.00053498	441.76096025787217	43.258	0.21607	43.119	42.921	43.137	-0.13929					7	5	2	0	0	0	0.027866	1	4009	4009		24.203	0	1	97695	+		24378	22178	16747	16785	28297	28297					0.06280624337182417
IAVVAGVVQ	9	Unmodified	_IAVVAGVVQ_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.1863098144531	2	428.268553	854.522553	-0.11961	-5.1226E-05	1.1467	0.00049109	1.0271	0.00043987	428.2686575895711	25.165	0.65026	24.938	24.581	25.231	-0.22683					25	14	2	0	0	0	0.024293	1	1160	1160		33.516	17.042	1	188700			24379	4999	16748	16786	28298	28298					0.08947276765479728
IAVVKLTAP	9	Unmodified	_IAVVKLTAP_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7663269042969	2	456.299853	910.585153	-0.5692	-0.00025973	3.119	0.0014232	2.5498	0.0011635	456.3011556215914	44.016	1.3592	44.016	43.332	44.691	0					62	38	2	0	0	0	0.024405	1	4175	4175		44.117	8.9161	1	985810	+		24380	26783	16749	16787	28299	28299					0.12628422833643071
IAWGREVAL	9	Unmodified	_IAWGREVAL_					0	0	0			REV__nc|ENSG00000163517|Q96DB2-2|HDAC11	REV__nc|ENSG00000163517|Q96DB2-2|HDAC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.764404296875	2	507.790184	1013.56581	-0.73938	-0.00037545	-1.0362	-0.00052617	-1.7756	-0.00090162	507.7895133548064	39.066	0.35511	38.967	38.772	39.127	-0.098755					14	9	2	0	0	0	0.024323	1	3329	3329		53.351	2.016	1	155170	+		24381	36852	16750	16788	28300	28300					0.05957466542747625
IAWKGLQVGG	10	Unmodified	_IAWKGLQVGG_					0	0	0			REV__nc|ENSG00000134755|Q02487-2|DSC2	REV__nc|ENSG00000134755|Q02487-2|DSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.814697265625	2	514.798009	1027.58147	-0.56639	-0.00029158	3.0141	0.0015517	2.4477	0.0012601	514.7994835262654	45.392	0.50881	45.243	44.974	45.483	-0.1488					28	14	3	0	0	0	0.03519	1	4345	4345		37.159	0	1	464260	+		24382	23475	16751	16789	28301	28301					0.06877753059802671
IAWSIIVIYYI	11	Unmodified	_IAWSIIVIYYI_					0	0	0			REV__ENSG00000157103|ENST00000287766|SLC6A1	REV__ENSG00000157103|ENST00000287766|SLC6A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.9326477050781	3	451.93208	1352.77441	0.40681	0.00018385	0.91811	0.00041492	1.3249	0.00059877	451.93241469583455	98.661	2.0539	98.671	97.815	99.869	0.010239					182	47	5	0	0	0	1.0499	1	12672	12672		25.126	2.5644	1	1634100	+		24383	25111	16752	16790	28302	28302					0.11213450336344977
IAWTRGAT	8	Unmodified	_IAWTRGAT_					0	0	0			REV__ENST00000558902.5_1_15:52548900-52571163:-|nuORF	REV__ENST00000558902.5_1_15:52548900-52571163:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2560119628906	2	438.240327	874.466101	0.69303	0.00030372	-0.73903	-0.00032387	-0.045991	-2.0155E-05	438.2398058430852	47.908	0.91039	47.721	47.423	48.334	-0.18684					49	24	3	0	0	0	0.027866	1	4693	4693		12.959	0	1	730740	+		24384	35103	16753	16791	28303	28303					0.023846489288075645
IAYIDLYDN	9	Unmodified	_IAYIDLYDN_					0	0	0			REV__ENSG00000166278|ENST00000299367|C2	REV__ENSG00000166278|ENST00000299367|C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.268798828125	2	550.268947	1098.52334	-0.095403	-5.2498E-05	-0.078582	-4.3241E-05	-0.17399	-9.5739E-05	550.2688635784821	80.242	2.0362	80.096	79.743	81.779	-0.146					111	48	5	0	0	0	0.31037	1	9644	9644		74.255	10.949	1	6670000	+		24385	25997	16754	16792	28304	28304					-0.0219797337615546
IAYLYEGDP	9	Unmodified	_IAYLYEGDP_					0	0	0		ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8186645507812	2	520.75039	1039.48623	0.27395	0.00014266	3.7085	0.0019312	3.9824	0.0020738	520.752161504039	71.883	0.56175	71.595	71.313	71.875	-0.28858					31	14	3	0	0	0	0.023775	1	8647	8647		57.811	0	1	313110			24386	12655	16755	16793	28305	28305					-0.03193644921907435
IAYLYEGDP	9	Unmodified	_IAYLYEGDP_					0	0	0		ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8194580078125	2	520.75039	1039.48623	0.0021871	1.1389E-06	3.7608	0.0019584	3.763	0.0019596	520.7522798460791	71.625	0.48209	71.635	71.396	71.879	0.010735					20	12	2	0	0	0	0.023775	1	8588	8588		47.916	0	1	411530			24387	12655	16755	16793	28306	28306					-0.03193644921907435
IAYSFEAI	8	Unmodified	_IAYSFEAI_					0	0	0			REV__ENSG00000176563|ENST00000588408|CNTD1	REV__ENSG00000176563|ENST00000588408|CNTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7663269042969	2	457.236919	912.459284	-0.26948	-0.00012322	2.1062	0.00096305	1.8368	0.00083983	457.2376168293298	23.139	0.41243	23.215	22.98	23.392	0.076241					10	9	2	0	0	0	0.027866	1	826	826		44.531	0	1	29149	+		24388	27030	16756	16794	28307	28307					-0.0004470874242770151
ICAWLGYGRA	10	Unmodified	_ICAWLGYGRA_					0	0	0			REV__nc|ENSG00000178026|Q2VPJ9-2|LRRC75B	REV__nc|ENSG00000178026|Q2VPJ9-2|LRRC75B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2899169921875	2	555.281669	1108.54878	-0.20938	-0.00011626	-0.27954	-0.00015522	-0.48892	-0.00027149	555.2814138717517	61.257	0.41012	61.051	60.849	61.259	-0.20599					16	9	3	0	0	0	0.03519	1	6823	6823		23.042	0	1	110960	+		24389	36977	16757	16795	28308	28308					-0.0011477733469291707
ICCKRKPQ	8	Unmodified	_ICCKRKPQ_					0	0	0			REV__nc|ENSG00000289694|P60953-1|CDC42	REV__nc|ENSG00000289694|P60953-1|CDC42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.28167724609375	2	488.264964	974.515376	-0.070518	-3.4432E-05	-3.3174	-0.0016197	-3.3879	-0.0016542	488.26297421880565	86.373	0.52112	86.327	86.076	86.597	-0.045097					18	11	2	0	0	0	0.027866	1	10781	10781		13.775	0	1	99896	+		24390	37225	16758	16796	28309	28309					0.027098976217530435
ICCQSHCEQHS	11	Unmodified	_ICCQSHCEQHS_					0	0	0			REV__ENSG00000204583|ENST00000376608|LRCOL1	REV__ENSG00000204583|ENST00000376608|LRCOL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.1820983886719	3	425.495213	1273.46381	0.21894	9.3158E-05	-3.4981	-0.0014884	-3.2792	-0.0013953	425.49427414848293	34.702	0.28303	34.478	34.379	34.662	-0.22412					11	6	2	0	0	0	0.024739	1	2596	2596		22.562	6.0317	1	96495	+		24391	28621	16759	16797	28310	28310					-0.1619825892512381
ICEQLPFPF	9	Unmodified	_ICEQLPFPF_					0	0	0		ENST00000446262.1_2_19:37019350-37025846:+|nuORF	ENST00000446262.1_2_19:37019350-37025846:+|nuORF	ENST00000446262.1_2_19:37019350-37025846:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2671508789062	2	547.272978	1092.5314	-0.89011	-0.00048713	-0.87188	-0.00047716	-1.762	-0.00096429	547.2719053442183	56.246	0.96456	56.03	55.745	56.709	-0.21551					48	24	4	0	0	0	0.024539	1	6023	6023		27.882	0	1	1547400			24392	14453	16760	16798	28311	28311					-0.011161176603764034
ICFERYKP	8	Unmodified	_ICFERYKP_					0	0	0		ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8060913085938	2	528.27077	1054.52699	-0.24356	-0.00012867	-2.9259	-0.0015457	-3.1694	-0.0016743	528.2688385480567	49.855	0.33397	49.704	49.52	49.854	-0.1512					13	8	2	0	0	0	0.027866	1	5168	5168		24.203	0	1	189830			24393	9689	16761	16799	28312	28312					0.0019041791672407271
ICFKREPMKS	10	Oxidation (M)	_ICFKREPM(Oxidation (M))KS_		ICFKREPM(1)KS		ICFKREPM(47)KS	0	0	1			REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF	REV__ENST00000423894.5_1_3:28283112-28361002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	418.88494873046875	3	418.882626	1253.62605	0.82346	0.00034493	4.1758	0.0017492	4.9993	0.0020941	418.88431196706347	37.03	1.2083	36.82	36.445	37.653	-0.2092					86	30	4	0	0	0	0.99077	1	2934	2934		47.228	12.727	1	2461100	+		24394	32224	16762	16800	28313	28313		892			0.009380728193264076
ICFRGAGAL	9	Unmodified	_ICFRGAGAL_					0	0	0			REV__ENSG00000162851|ENST00000366514|TFB2M	REV__ENSG00000162851|ENST00000366514|TFB2M	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.26593017578125	2	454.244555	906.474557	-0.17944	-8.151E-05	0.74004	0.00033616	0.5606	0.00025465	454.2456706183992	63.32	0.31648	63.136	62.955	63.272	-0.18386					9	7	2	0	0	0	0.023528	1	7138	7138		60.294	4.7898	1	62471	+		24395	25496	16763	16801	28314	28314					0.01757879573790433
ICGLTVLWW	9	Unmodified	_ICGLTVLWW_					0	0	0			REV__ACSM2B|p.I123T|1|0.29|ENSG00000066813|chr16:20559257-20559257|A/G|missense_variant	REV__ACSM2B|p.I123T|1|0.29|ENSG00000066813|chr16:20559257-20559257|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3028564453125	2	545.791338	1089.56812	-1.4652	-0.0007997	-1.3987	-0.00076338	-2.8639	-0.0015631	545.7900386309592	65.205	0.44798	65.002	64.818	65.266	-0.20254					17	10	2	0	0	0	0.024506	1	7423	7423		30.504	0	1	307160	+		24396	19056	16764	16802	28315	28315					0.026921789561811238
ICICYWVVT	9	Unmodified	_ICICYWVVT_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.276123046875	2	550.269381	1098.52421	-0.60534	-0.0003331	2.551	0.0014038	1.9457	0.0010707	550.7723080939134	46.745	0.7481	46.797	46.239	46.987	0.051395					25	20	2	0	0	0	0.024443	1	4567	4567		26.796	14.589	1	227010			24397	5185	16765	16803	28316	28316					-0.021111735324438996
ICIELMQIL	9	Unmodified	_ICIELMQIL_					0	0	0			REV__ENSG00000129048|ENST00000249887|ACKR4	REV__ENSG00000129048|ENST00000249887|ACKR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2970581054688	2	538.298139	1074.58172	0.62331	0.00033553	0.046295	2.4921E-05	0.6696	0.00036045	538.2980934130035	59.502	1.3665	59.502	58.999	60.366	0					71	36	3	0	0	0	0.15889	1	6813	6813		97.473	1.2823	1	9751600	+		24398	23029	16766	16804	28317	28317					0.04741668673136701
ICIENDKFGID	11	Unmodified	_ICIENDKFGID_					0	0	0			REV__ENSG00000186130|ENST00000373659|ZBTB6	REV__ENSG00000186130|ENST00000373659|ZBTB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.55487060546875	3	422.872673	1265.59619	-0.12333	-5.2155E-05	3.3379	0.0014115	3.2146	0.0013593	422.87409826887705	23.499	0.71146	23.319	23.112	23.824	-0.17989					18	16	2	0	0	0	0.02473	1	999	999		26.75	0	1	41535	+		24399	27826	16767	16805	28318	28318					-0.025985876450249634
ICIVLMATV	9	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))IVLMATV_	IC(1)IVLMATV		IC(110)IVLMATV		0	1	0		ENSG00000183542|ENST00000309384|KLRC4;ENSG00000205809|ENST00000381902|KLRC2;ENSG00000205810|ENST00000396439|KLRC3;nc|ENSG00000205810|Q07444-2|KLRC3	ENSG00000183542|ENST00000309384|KLRC4	ENSG00000183542|ENST00000309384|KLRC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2856140136719	2	510.285031	1018.55551	-0.38288	-0.00019538	0.85299	0.00043527	0.47012	0.00023989	510.2850619104917	56.874	0.84923	56.969	56.432	57.281	0.095306					84	22	6	0	0	0	0.088511	1	6313	6313		114.59	9.317	1	7085500			24400	9242	16768	16806	28319	28319	117				0.04697399501651489
ICIVRFWT	8	Unmodified	_ICIVRFWT_					0	0	0		ENST00000317357.9_1_6:107979792-107980005:+|nuORF	ENST00000317357.9_1_6:107979792-107980005:+|nuORF	ENST00000317357.9_1_6:107979792-107980005:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2996215820312	2	519.28368	1036.55281	-0.50402	-0.00026173	3.0723	0.0015954	2.5683	0.0013337	519.2846985914967	60.514	0.52906	60.308	59.975	60.504	-0.20599					25	12	3	0	0	0	0.027866	1	6741	6741		25.45	5.4534	1	287240			24401	12163	16769	16807	28320	28320					0.0359931215900815
ICIVSVFF	8	Unmodified	_ICIVSVFF_					0	0	0			REV__ENST00000382361.7_1_7:5646078-5646261:+|nuORF	REV__ENST00000382361.7_1_7:5646078-5646261:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.253662109375	2	464.254057	926.493561	0.32832	0.00015242	-0.92996	-0.00043174	-0.60164	-0.00027931	464.25350960111643	78.41	1.5236	78.179	77.834	79.357	-0.23141					99	35	4	0	0	0	1.0133	1	9363	9363		35.201	0	1	2225500	+		24402	31543	16770	16808	28321	28321					0.027374161448278755
ICKNMDPNR	9	Unmodified	_ICKNMDPNR_					0	0	0			REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.32421875	2	545.760243	1089.50593	-0.38954	-0.0002126	1.3167	0.00071862	0.9272	0.00050603	545.7616650402617	68.027	0.2321	68.027	67.87	68.102	0					8	5	2	0	0	0	0.02435	1	8140	8140		42.396	15.703	1	58311	+		24403	26334	16771	16809	28322	28322					-0.03523915454456983
ICKNMDPNR	9	Unmodified	_ICKNMDPNR_					0	0	0			REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.760243	1089.50593	0.085677	4.6759E-05	-3.8592	-0.0021062	-3.7736	-0.0020595	545.7578538718565	67.992	0.73141	67.758	67.387	68.119	-0.23376	-0.051757	-0.00123	NaN	62.107	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495770	+		24404	26334	16771	16809							-0.03523915454456983
ICKNMDPNR	9	Unmodified	_ICKNMDPNR_					0	0	0			REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	REV__nc|ENSG00000169218|Q2MKA7-3|RSPO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.760243	1089.50593	-0.28688	-0.00015657	-3.6415	-0.0019874	-3.9284	-0.0021439	545.7578968897245	67.987	0.88921	67.749	67.378	68.267	-0.23814	-0.060315	-0.0009923	NaN	62.107	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404700	+		24405	26334	16771	16809							-0.03523915454456983
ICLSLGRLL	9	Unmodified	_ICLSLGRLL_					0	0	0		ENSG00000162878|ENST00000294964|PKDCC	ENSG00000162878|ENST00000294964|PKDCC	ENSG00000162878|ENST00000294964|PKDCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28948974609375	2	494.304613	986.594672	0.38321	0.00018942	-0.50282	-0.00024855	-0.11961	-5.9123E-05	494.3039626954693	61.699	0.61429	61.472	61.189	61.803	-0.22663					30	15	3	0	0	0	0.019502	1	7132	7132		87.754	16.459	1	424870			24406	7003	16772	16810	28323	28323					0.10083867847538386
ICNLCEKSV	9	Carbamidomethyl (C)	_ICNLC(Carbamidomethyl (C))EKSV_	IC(0.224)NLC(0.776)EKSV		IC(-5.4)NLC(5.4)EKSV		0	1	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2551879882812	2	533.257002	1064.49945	-1.0924	-0.00058253	-2.5878	-0.00138	-3.6802	-0.0019625	533.255519671021	38.826	1.437	38.604	38.186	39.623	-0.22178					61	30	3	0	0	0	0.094442	1	3246	3246		112.41	16.22	2	3185100			24407	10918	16773	16811	28324	28324	153;154				-0.030218534058121804
ICNLCEKSV	9	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))NLCEKSV_	IC(0.937)NLC(0.063)EKSV		IC(12)NLC(-12)EKSV		0	1	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.25537109375	2	533.257002	1064.49945	-0.67201	-0.00035835	-2.8017	-0.001494	-3.4737	-0.0018524	533.2555964440941	40.859	3.0577	40.631	39.259	42.316	-0.2278					145	80	2	0	0	0	0.077175	1	3557	3557		118.74	10.656	2	2009700			24408	10918	16773	16811	28325	28325	153;154				-0.030218534058121804
ICNLCEKSV	9	Carbamidomethyl (C)	_ICNLC(Carbamidomethyl (C))EKSV_	IC(0.071)NLC(0.929)EKSV		IC(-11)NLC(11)EKSV		0	1	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2555541992188	2	533.257002	1064.49945	-1.2428	-0.00066274	-1.8741	-0.00099937	-3.1169	-0.0016621	533.2558982323878	40.937	2.6949	40.707	39.237	41.932	-0.23029					156	71	3	0	0	0	0.1158	1	3569	3569		107.01	8.3781	2	1866700			24409	10918	16773	16811	28326	28326	153;154				-0.030218534058121804
ICPDRQLRRYL	11	Unmodified	_ICPDRQLRRYL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.732177734375	3	478.266239	1431.77689	-0.68267	-0.0003265	-2.3231	-0.0011111	-3.0057	-0.0014375	478.2651238147664	38.958	0.5024	38.735	38.497	38.999	-0.22311					19	13	2	0	0	0	0.024851	1	3294	3294		9.6461	0	1	276770			24410	5750	16774	16812	28327	28327					0.07826975522357316
ICPICLEMF	9	Unmodified	_ICPICLEMF_					0	0	0		nc|ENSG00000158022|Q969Q1-2|TRIM63;ENSG00000158022|ENST00000374272|TRIM63;nc|ENSG00000147573|Q9BYV6-4|TRIM55;ENSG00000138100|ENST00000380075|TRIM54;nc|ENSG00000138100|Q9BYV2-2|TRIM54;nc|ENSG00000147573|Q9BYV6-2|TRIM55;nc|ENSG00000147573|Q9BYV6-3|TRIM55;ENSG00000147573|ENST00000315962|TRIM55	nc|ENSG00000158022|Q969Q1-2|TRIM63	nc|ENSG00000158022|Q969Q1-2|TRIM63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7517700195312	2	534.749967	1067.48538	-0.58818	-0.00031453	3.6944	0.0019756	3.1063	0.0016611	534.7516679761683	39.951	0.74569	39.801	39.513	40.258	-0.1497					45	19	3	0	0	0	0.52323	1	3438	3438		57.811	3.035	1	3690800			24411	6639	16775	16813	28328	28328					-0.04566222158473465
ICPNVNISIP	10	Unmodified	_ICPNVNISIP_					0	0	0			REV__ENSG00000154589|ENST00000284818|LY96	REV__ENSG00000154589|ENST00000284818|LY96	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.23828125	2	535.289159	1068.56377	-1.0124	-0.00054194	-2.9189	-0.0015624	-3.9313	-0.0021044	535.2871412533908	60.394	0.62467	60.394	60.143	60.768	0					32	16	3	0	0	0	0.03519	1	6949	6949		84.916	16.129	1	298010	+		24412	24967	16776	16814	28329	28329					0.03222669742626749
ICPRLSWLA	9	Unmodified	_ICPRLSWLA_					0	0	0		ENST00000474359.6_1_12:58016417-58018310:+|nuORF	ENST00000474359.6_1_12:58016417-58018310:+|nuORF	ENST00000474359.6_1_12:58016417-58018310:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.78564453125	2	529.794412	1057.57427	-0.97168	-0.00051479	3.2022	0.0016965	2.2305	0.0011817	529.7956197293316	52.749	0.37937	52.749	52.595	52.974	0					15	9	2	0	0	0	0.024506	1	5693	5693		30.504	5.9844	1	198520			24413	15033	16777	16815	28330	28330					0.04778697187725811
ICPSKLFGP	9	Unmodified	_ICPSKLFGP_					0	0	0		ENST00000487755.1_1_1:155938929-155939834:-|nuORF;ENST00000465079.1_1_1:155938929-155948853:-|nuORF	ENST00000487755.1_1_1:155938929-155939834:-|nuORF	ENST00000487755.1_1_1:155938929-155939834:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2887878417969	2	481.262413	960.510274	0.067859	3.2658E-05	3.0523	0.0014689	3.1201	0.0015016	481.2638417510767	65.833	0.65935	65.56	65.33	65.99	-0.27282					39	17	3	0	0	0	0.024263	1	7837	7837		51.335	18.523	1	728830			24414	14772	16778	16816	28331	28331					0.02843917030781995
ICQVCEETL	9	Unmodified	_ICQVCEETL_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7896118164062	2	519.235735	1036.45692	-0.88971	-0.00046197	-2.1123	-0.0010968	-3.002	-0.0015588	519.234494312176	85.086	0.91403	85.111	84.704	85.618	0.025536					31	21	2	0	0	0	0.024427	1	10651	10651		42.396	8.8806	1	205940			24415	6661	16779	16817	28332	28332					-0.05985248534057064
ICREIEKL	8	Unmodified	_ICREIEKL_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2880554199219	2	502.283877	1002.5532	-0.28319	-0.00014224	1.1633	0.00058432	0.88014	0.00044208	502.2844283909736	44.254	1.1568	44.291	43.456	44.612	0.0369					69	32	4	0	0	0	0.94517	1	4111	4111		45.952	3.5558	1	18948000	+		24416	25112	16780	16818	28333	28333					0.05202687088217317
ICRGLTHL	8	Unmodified	_ICRGLTHL_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.75726318359375	2	456.75783	911.501106	-0.46019	-0.00021019	0.3675	0.00016786	-0.092689	-4.2336E-05	456.7578111732551	23.085	0.67529	22.9	22.6	23.275	-0.18539					47	14	5	0	0	0	0.59392	1	873	873		76.847	2.33	1	1309400	+		24417	22034	16781	16819	28334	28334					0.04181568465116925
ICRGLTHL	8	Unmodified	_ICRGLTHL_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.7575988769531	2	456.75783	911.501106	1.4129	0.00064535	-1.8997	-0.00086771	-0.48683	-0.00022236	456.75687407002334	23.11	0.63018	22.919	22.617	23.248	-0.19117					36	13	4	0	0	0	0.50239	1	862	862		85.359	2.0723	1	1666600	+		24418	22034	16781	16819	28335	28335					0.04181568465116925
ICRGRGGS	8	Unmodified	_ICRGRGGS_					0	0	0			REV__nc|ENSG00000177030|O75398-4|DEAF1	REV__nc|ENSG00000177030|O75398-4|DEAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.20947265625	2	403.208504	804.402455	0.15817	6.3777E-05	0.69798	0.00028143	0.85615	0.00034521	403.2086895591527	85.513	1.104	85.375	84.988	86.092	-0.13752					58	25	3	0	0	0	1.0574	1	10371	10371		26.796	0	1	851540	+		24419	27075	16782	16820	28336	28336					-0.007570347799287447
ICSFLSRIF	9	Unmodified	_ICSFLSRIF_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.2989501953125	2	543.294245	1084.57394	0.12099	6.5733E-05	-0.71745	-0.00038979	-0.59646	-0.00032405	543.2938359632423	72.703	0.5267	72.422	72.1	72.627	-0.28124					21	12	2	0	0	0	0.80003	1	8813	8813		39.253	0	1	2367300			24420	10554	16783	16821	28337	28337					0.0350327746784842
ICSLCECNRCV	11	Unmodified	_ICSLCECNRCV_					0	0	0			REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.7603759765625	2	621.758529	1241.5025	0.36142	0.00022471	1.9312	0.0012007	2.2926	0.0014254	621.7597054952719	70.932	1.0096	70.66	70.427	71.437	-0.27184					60	24	4	0	0	0	0.72712	1	8249	8249		62.107	1.1355	1	3860900	+		24421	24389	16784	16822	28338	28338					-0.10858669614981409
ICSLCECNRCV	11	Unmodified	_ICSLCECNRCV_					0	0	0			REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.7589721679688	2	621.758529	1241.5025	-1.0457	-0.0006502	3.5519	0.0022084	2.5062	0.0015582	621.7606160963422	70.883	1.0351	70.626	70.411	71.446	-0.25713					59	25	3	0	0	0	0.6032	1	8254	8254		69.628	2.134	1	4215700	+		24422	24389	16784	16822	28339	28339					-0.10858669614981409
ICTETGANLF	10	Unmodified	_ICTETGANLF_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7548828125	2	534.755149	1067.49575	-0.49976	-0.00026725	0.51071	0.0002731	0.010948	5.8544E-06	534.7547643529468	56.411	1.2981	56.255	55.82	57.118	-0.15656					72	33	3	0	0	0	0.82838	1	6119	6119		58.782	0	1	5873500			24423	4590	16785	16823	28340	28340					-0.035301999080502355
ICTHIYYY	8	Unmodified	_ICTHIYYY_					0	0	0			REV__ENST00000355377.6_1_16:19278394-19278601:+|nuORF	REV__ENST00000355377.6_1_16:19278394-19278601:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2489013671875	2	538.249503	1074.48445	-0.23102	-0.00012435	2.0252	0.0010901	1.7942	0.00096573	538.2503945618381	56.113	0.61052	55.897	55.702	56.313	-0.21607					39	15	3	0	0	0	0.71717	1	6079	6079		65.897	8.4448	1	3579100	+		24424	30773	16786	16824	28341	28341					-0.04980977211494064
ICTPPSVKL	9	Unmodified	_ICTPPSVKL_					0	0	0			REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2781066894531	2	479.275521	956.536489	0.21198	0.0001016	4.1284	0.0019786	4.3404	0.0020802	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.35646	1	10472	10472		68.787	0.30212	1	4888300	+		24425	34995	16787	16825	28342	28342					0.05648186202256511
ICTVPLIDV	9	Unmodified	_ICTVPLIDV_					0	0	0		ENSG00000109586|ENST00000265000|GALNT7;ENST00000512285.5_1_4:174219242-174219449:+|nuORF	ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	MSMS	OPSCC_40_ClassI_Rep-1	4	486.7773742675781	2	486.775354	971.536154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.656	1	41.528	41.028	42.028	-0.12751								0	0	0	0.21697	1	3697	3697		73.975	7.5455	1				24426	2983	16788	16826	28343	28343					0.04924766482395171
ICVLAISV	8	Unmodified	_ICVLAISV_					0	0	0			REV__ENST00000371602.8_1_20:49509224-49509335:-|nuORF	REV__ENST00000371602.8_1_20:49509224-49509335:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.18292236328125	2	409.246232	816.477911	1.9807	0.00081059	2.3348	0.0009555	4.3155	0.0017661	409.24702771034964	24.75	0.39341	24.569	24.329	24.723	-0.18089					14	8	2	0	0	0	0.027866	1	1090	1090		20.482	6.7065	1	166870	+		24427	31169	16789	16827	28344	28344					0.06233129627787548
ICVLPITIW	9	Unmodified	_ICVLPITIW_					0	0	0			REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	REV__nc|ENSG00000144481|Q7Z2W7-4|TRPM8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2511596679688	2	529.309364	1056.60417	1.0355	0.00054811	-2.4649	-0.0013047	-1.4294	-0.00075661	529.3081458510801	51.556	0.34501	51.372	51.179	51.524	-0.18405					15	8	3	0	0	0	0.024325	1	5279	5279		50.025	7.5501	1	79328	+		24428	24338	16790	16828	28345	28345					0.0781363613305075
ICVVDTQTV	9	Unmodified	_ICVVDTQTV_					0	0	0		nc|ENSG00000180667|Q5VVQ6-2|YOD1;ENSG00000180667|ENST00000315927|YOD1	nc|ENSG00000180667|Q5VVQ6-2|YOD1	nc|ENSG00000180667|Q5VVQ6-2|YOD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2920227050781	2	489.252243	976.489932	-0.68007	-0.00033273	-4.2925	-0.0021001	-4.9725	-0.0024328	489.2512223527735	60.474	0.51134	60.474	60.181	60.692	0					28	13	3	0	0	0	0.024292	1	6981	6981		49.442	7.0454	1	322440			24429	8989	16791	16829	28346	28346					0.0007470158029718732
ICVWWQNGE	9	Unmodified	_ICVWWQNGE_					0	0	0		nc|ENSG00000164520|Q8TD07-5|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.8294067382812	2	567.755484	1133.49641	-0.3171	-0.00018004	-2.7465	-0.0015593	-3.0636	-0.0017394	567.7546480665089	64.302	1.7736	64.047	63.534	65.307	-0.25563					60	44	2	0	0	0	0.024205	1	7441	7441		63.306	9.9548	1	331130			24430	7288	16792	16830	28347	28347					-0.06499360468319537
ICVWWQNGE	9	Unmodified	_ICVWWQNGE_					0	0	0		nc|ENSG00000164520|Q8TD07-5|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.755484	1133.49641	-0.20866	-0.00011847	-2.4356	-0.0013828	-2.6443	-0.0015013	567.7545804268448	64.236	1.2095	64.008	63.366	64.575	-0.22773	-0.00097921	0.00022245	NaN	53.351	46	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305660			24431	7288	16792	16830							-0.06499360468319537
ICVWWQNGE	9	Unmodified	_ICVWWQNGE_					0	0	0		nc|ENSG00000164520|Q8TD07-5|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.755484	1133.49641	0.049552	2.8133E-05	-2.6538	-0.0015067	-2.6042	-0.0014786	567.7543218860176	64.164	1.0565	63.972	63.493	64.549	-0.19243	-0.036983	-2.5293E-05	NaN	53.351	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243030			24432	7288	16792	16830							-0.06499360468319537
ICYYFKGAF	9	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))YYFKGAF_	IC(1)YYFKGAF		IC(83)YYFKGAF		0	1	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.7784423828125	2	584.778428	1167.5423	-1.0917	-0.0006384	0.18458	0.00010794	-0.90713	-0.00053047	584.7785079478465	42.808	1.2819	42.57	41.965	43.247	-0.23736					56	33	2	0	0	0	0.24299	1	3869	3869		83.287	11.41	1	3046800	+		24433	19859	16793	16831	28348	28348	253				-0.03476715286092258
ICYYFKGAF	9	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))YYFKGAF_					0	1	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	584.778428	1167.5423	-1.0917	-0.0006384	0.18458	0.00010794	-0.90713	-0.00053047	584.7785079478465	42.808	1.2819	42.57	41.965	43.247	-0.23736	0.0057093	0.00034152	NaN	83.287	56	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3046800	+		24434	19859	16793	16831			253				-0.03476715286092258
IDAEVSQRL	9	Unmodified	_IDAEVSQRL_					0	0	0			REV__ENSG00000167916|ENST00000264651|KRT24;REV__CON__P08730-1;REV__ENSG00000186395|ENST00000269576|KRT10;REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	REV__ENSG00000167916|ENST00000264651|KRT24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.804931640625	2	515.780013	1029.54547	-0.49626	-0.00025596	1.9897	0.0010262	1.4934	0.00077028	515.7807622059671	58.482	0.7288	58.295	57.993	58.721	-0.18705					49	19	3	0	0	0	0.024323	1	6605	6605		44.117	5.3107	1	2592500	+	+	24435	19578;19546;19549;33101	16794	16832	28349	28349					0.03188251092274186
IDAFHYVQL	9	Unmodified	_IDAFHYVQL_					0	0	0		nc|ENSG00000168268|Q9H857-4|NT5DC2;nc|ENSG00000168268|Q9H857|NT5DC2;nc|ENSG00000168268|Q9H857-3|NT5DC2;ENSG00000168268|ENST00000422318|NT5DC2;ENST00000492555.5_1_3:52562203-52563345:-|nuORF;NT5DC2|p.R352Afs*47|1|0.31|ENSG00000168268|chr3:52525250-52525250|G/-|frameshift_variant	nc|ENSG00000168268|Q9H857-4|NT5DC2	nc|ENSG00000168268|Q9H857-4|NT5DC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7670288085938	2	553.287474	1104.5604	-0.18791	-0.00010397	-1.6673	-0.0009225	-1.8552	-0.0010265	553.2852872009698	61.389	0.53488	61.183	60.889	61.424	-0.20599					17	12	3	0	0	0	0.024397	1	6894	6894		31.53	10.583	1	72734			24436	7804	16795	16833	28350	28350					0.012297429602767807
IDAGALAVFPN	11	Unmodified	_IDAGALAVFPN_					0	0	0		ENST00000458289.2_1_4:81001192-81001915:+|nuORF	ENST00000458289.2_1_4:81001192-81001915:+|nuORF	ENST00000458289.2_1_4:81001192-81001915:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.289794921875	2	544.292756	1086.57096	-1.071	-0.00058294	3.0032	0.0016346	1.9322	0.0010517	544.2941043898498	50.464	0.61376	50.545	50.344	50.958	0.080994					24	17	2	0	0	0	0.024756	1	5275	5275		36.447	14.487	1	290210			24437	14621	16796	16834	28351	28351					0.031137256147076187
IDAIRIPVL	9	Unmodified	_IDAIRIPVL_					0	0	0		ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3238830566406	2	505.32386	1008.63317	0.12083	6.106E-05	-0.87121	-0.00044024	-0.75037	-0.00037918	505.32350651286185	79.073	3.4594	78.842	78.346	81.805	-0.23141					204	82	5	0	0	0	0.80003	1	9459	9459		39.253	3.6345	1	35664000			24438	5708	16797	16835	28352	28352					0.12919496753693238
IDAKRLVV	8	Unmodified	_IDAKRLVV_					0	0	0			REV__ENST00000495909.2_1_5:90650295-90650631:+|nuORF	REV__ENST00000495909.2_1_5:90650295-90650631:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7508850097656	2	457.295102	912.575651	0.21411	9.7913E-05	-0.36355	-0.00016625	-0.14943	-6.8336E-05	457.2948272621456	41.979	0.50523	42.005	41.784	42.289	0.026012					20	14	2	0	0	0	0.027866	1	3745	3745		24.203	0	1	148240	+		24439	28898	16798	16836	28353	28353					0.11586654548136721
IDAKVQALE	9	Unmodified	_IDAKVQALE_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3294982910156	2	493.779482	985.544411	1.9476	0.00096169	-1.8897	-0.00093312	0.057861	2.8571E-05	493.77832261532706	23.963	0.96573	23.782	23.495	24.461	-0.18089					34	21	2	0	0	0	0.024292	1	1036	1036		58.782	5.4305	1	802510	+		24440	36422	16799	16837	28354	28354					0.051060367233731085
IDALCVAPSH	10	Unmodified	_IDALCVAPSH_					0	0	0		ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8135986328125	2	513.257859	1024.50117	-0.42184	-0.00021651	-2.8327	-0.0014539	-3.2545	-0.0016704	513.2562559725549	59.598	0.55426	59.684	59.389	59.943	0.085682					29	14	3	0	0	0	0.03519	1	6772	6772		26.693	3.6504	1	528110			24441	10604	16800	16838	28355	28355					-0.010104763255412763
IDAPLALKDE	10	Unmodified	_IDAPLALKDE_					0	0	0			REV__ENSG00000111300|ENST00000261745|NAA25	REV__ENSG00000111300|ENST00000261745|NAA25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7760620117188	2	542.797872	1083.58119	-0.51247	-0.00027817	2.7191	0.0014759	2.2066	0.0011978	543.3012261730796	68.257	1.4105	68.257	67.606	69.016	0					44	36	2	0	0	0	0.03519	1	8112	8112		87.696	10.379	1	3616600	+		24442	21907	16801	16839	28356	28356					0.042742885492771165
IDARKFVLE	9	Unmodified	_IDARKFVLE_					0	0	0			REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-3	3	545.8174438476562	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	107.49	106.99	107.99	0.0031509								0	0	0	0.64798	1	13716	13716		31.53	2.3803	1		+		24443	24821	16802	16840	28357	28357					0.07702004885732094
IDCVGVGLLI	10	Unmodified	_IDCVGVGLLI_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2860107421875	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.79525	1	10607	10607		60.972	2.19	1	10557000			24444	3447	16803	16841	28358	28358					0.06244455373735036
IDCVGVGLLI	10	Unmodified	_IDCVGVGLLI_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2877502441406	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.75995	1	10609	10609		63.306	7.8021	1	10571000			24445	3447	16803	16841	28359	28359					0.06244455373735036
IDDFRNRNGS	10	Unmodified	_IDDFRNRNGS_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.2861328125	2	597.286525	1192.5585	-0.75267	-0.00044956	0.97306	0.0005812	0.22039	0.00013164	597.2870362388936	24.891	0.73322	24.716	24.468	25.201	-0.17484					44	16	4	0	0	0	1.1333	1	1141	1141		28.081	2.5074	1	531310			24446	6396	16804	16842	28360	28360					-0.03007917795616777
IDDIKNAVV	9	Unmodified	_IDDIKNAVV_					0	0	0			REV__nc|ENSG00000144134|Q9UNT1|RABL2B	REV__nc|ENSG00000144134|Q9UNT1|RABL2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3060302734375	2	493.779482	985.544411	0.42796	0.00021132	0.22986	0.0001135	0.65782	0.00032482	493.77955033685606	69.834	0.68452	69.834	69.344	70.029	0					25	16	3	0	0	0	0.024344	1	8390	8390		45.972	0	1	269190	+		24447	36744	16805	16843	28361	28361					0.051060367233731085
IDDIKWEK	8	Unmodified	_IDDIKWEK_					0	0	0		ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.7796020507812	2	523.779482	1045.54441	-0.796	-0.00041693	0.57511	0.00030123	-0.22088	-0.00011569	523.7797122819186	78.341	1.8153	78.341	77.632	79.447	0					98	43	4	0	0	0	0.53593	1	9666	9666		82.241	0	1	2018900			24448	3582	16806	16844	28362	28362					0.02346036723361067
IDDIQAITP	9	Unmodified	_IDDIQAITP_					0	0	0			REV__GLDC|p.R988Q|1|0.8|ENSG00000178445|chr9:6533117-6533117|C/T|missense_variant	REV__GLDC|p.R988Q|1|0.8|ENSG00000178445|chr9:6533117-6533117|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3060302734375	2	493.263665	984.512776	0.2261	0.00011153	-0.51556	-0.00025431	-0.28946	-0.00014278	493.263610197924	69.567	0.57083	69.567	69.344	69.915	0					17	13	2	0	0	0	0.0242	1	8390	8390		60.118	12.461	1	416190	+		24449	36072	16807	16845	28363	28363					0.019900439694083616
IDDKGQLI	8	Unmodified	_IDDKGQLI_					0	0	0			REV__ENST00000564148.1_1_16:15490031-15501966:+|nuORF	REV__ENST00000564148.1_1_16:15490031-15501966:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2474670410156	2	451.2531	900.491647	-0.1342	-6.0558E-05	-3.6649	-0.0016538	-3.7991	-0.0017144	451.2498885657479	39.497	2.8473	39.333	38.829	41.676	-0.16459					113	75	3	0	0	0	0.91956	1	3374	3374		49.442	0	1	2496600	+		24450	25102	16808	16846	28364	28364					0.03742078660570769
IDDLSGSLLI	10	Unmodified	_IDDLSGSLLI_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2939453125	2	523.292422	1044.57029	0.66941	0.0003503	2.8782	0.0015061	3.5476	0.0018564	523.2937129938047	51.733	1.1744	51.549	51.14	52.314	-0.18404					85	30	4	0	0	0	0.34101	2	5333	5320;5333		104.75	8.4361	1	7021700	+		24451	19428	16809	16847	28365;28366	28366					0.04978886175013031
IDDLWRPN	8	Unmodified	_IDDLWRPN_					0	0	0			REV__ENST00000424795.2_1_9:71403867-71403945:-|nuORF	REV__ENST00000424795.2_1_9:71403867-71403945:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.799560546875	2	514.761623	1027.50869	-0.067458	-3.4725E-05	0.17321	8.9164E-05	0.10576	5.4439E-05	514.7615892882199	45.443	0.55404	45.19	44.905	45.459	-0.25252					37	15	3	0	0	0	0.027866	1	4278	4278		82.305	0	1	595180	+		24452	32240	16810	16848	28367	28367					-0.003960007336445415
IDDLWRTV	8	Unmodified	_IDDLWRTV_					0	0	0			REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1;REV__ENSG00000166387|ENST00000299492|PPFIBP2	REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2502136230469	2	509.271824	1016.5291	0.44872	0.00022852	-0.83162	-0.00042352	-0.38291	-0.000195	509.27097641175754	53.007	0.47945	52.749	52.482	52.961	-0.25838					18	11	2	0	0	0	0.027866	1	5489	5489		53.351	7.3792	1	168250	+		24453	21877;26009	16811	16849	28368	28368					0.021491699261900976
IDDYVPLNGA	10	Unmodified	_IDDYVPLNGA_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2967529296875	2	538.766571	1075.51859	-1.2057	-0.00064957	3.8886	0.0020951	2.683	0.0014455	538.7686373556226	60.61	0.74007	60.61	60.256	60.996	0					32	19	2	0	0	0	0.03519	1	6925	6925		40.778	1.972	1	184690	+		24454	22316	16812	16850	28369	28369					-0.016148575188935865
IDEAHKSLS	9	Unmodified	_IDEAHKSLS_					0	0	0			REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.25872802734375	2	500.258914	998.503274	-0.94013	-0.00047031	0.57189	0.00028609	-0.36824	-0.00018421	500.25910518125517	33.021	0.68164	32.855	32.597	33.278	-0.16565					46	16	5	0	0	0	0.17822	1	2305	2305		93.195	2.4188	1	1606400	+		24455	23334	16813	16851	28370	28370					0.003962756839086978
IDECQHRK	8	Unmodified	_IDECQHRK_					0	0	0			REV__DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	REV__DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7509765625	2	514.750733	1027.48691	-0.90375	-0.00046521	-0.19633	-0.00010106	-1.1001	-0.00056627	514.750604137267	79.969	0.95958	79.99	79.357	80.316	0.021439					50	22	4	0	0	0	0.6248	1	9860	9860		73.975	5.1879	1	698180	+		24456	19719	16814	16852	28371	28371					-0.02573128753851961
IDEEEQHQQR	10	Unmodified	_IDEEEQHQQR_					0	0	0			REV__ENSG00000160818|ENST00000368232|GPATCH4	REV__ENSG00000160818|ENST00000368232|GPATCH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2713623046875	3	437.868979	1310.58511	-0.22577	-9.886E-05	1.3285	0.0005817	1.1027	0.00048284	437.8691458763857	20.816	0.29765	20.593	20.464	20.762	-0.22344					7	5	2	0	0	0	0.03519	1	583	583		14.086	0	1	8013	+		24457	25350	16815	16853	28372	28372					-0.05776273694959855
IDEFYKKWDQW	11	Unmodified	_IDEFYKKWDQW_					0	0	0			REV__ENSG00000128274|ENST00000642412|A4GALT	REV__ENSG00000128274|ENST00000642412|A4GALT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7664184570312	3	519.91727	1556.72998	0.35949	0.00018691	-1.8704	-0.00097245	-1.5109	-0.00078554	519.9168734359366	47.854	0.22098	47.667	47.491	47.712	-0.18684					7	5	2	0	0	0	0.024805	1	4695	4695		19.627	13.306	1	132110	+		24458	22974	16816	16854	28373	28373					-0.026116055478269118
IDEINGFIT	9	Unmodified	_IDEINGFIT_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4;REV__nc|ENSG00000228741|Q96N96-5|SPATA13	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2764892578125	2	511.263665	1020.51278	-0.38093	-0.00019475	0.00027745	1.4185E-07	-0.38065	-0.00019461	511.26346759728705	73.415	0.5509	73.224	72.927	73.478	-0.19026					20	13	2	0	0	0	0.0242	1	8581	8581		51.193	15.574	1	92055	+		24459	23610;27521	16817	16855	28374	28374					0.003340439694284214
IDELNRELQ	9	Unmodified	_IDELNRELQ_					0	0	0		ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L	ENSG00000137942|ENST00000271234|FNBP1L	ENSG00000137942|ENST00000271234|FNBP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.3139038085938	2	565.296027	1128.5775	-0.65941	-0.00037276	-1.7798	-0.0010061	-2.4392	-0.0013789	565.2952719781193	36.503	0.35368	36.503	36.37	36.724	0					11	9	2	0	0	0	0.024344	1	2888	2888		54.776	19.158	1	169110			24460	5177	16818	16856	28375	28375					0.01835618775430703
IDELQLLVN	9	Unmodified	_IDELQLLVN_					0	0	0			REV__ENSG00000203837|ENST00000369230|PNLIPRP3	REV__ENSG00000203837|ENST00000369230|PNLIPRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2747802734375	2	528.800414	1055.58628	-1.0154	-0.00053697	0.92245	0.00048779	-0.093	-4.9178E-05	528.8004886010618	79.961	0.62868	79.961	79.744	80.373	0					23	14	2	0	0	0	0.024523	1	9942	9942		21.96	0	1	190720	+		24461	28548	16819	16857	28376	28376					0.06070592411901998
IDEPSTHSW	9	Unmodified	_IDEPSTHSW_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2385864257812	2	536.240721	1070.46689	-1.3701	-0.0007347	-3.1161	-0.001671	-4.4862	-0.0024057	536.2388768028143	60.908	1.0505	60.654	60.336	61.387	-0.25373					74	25	5	0	0	0	0.40179	1	6794	6794		65.803	0	1	4352100	+		24462	23099	16820	16858	28377	28377					-0.06552601212820264
IDEQQKLL	8	Unmodified	_IDEQQKLL_					0	0	0		ENST00000478683.1_1_2:171902682-171910351:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;TLK1|p.T688Kfs*10|1|0.24|ENSG00000198586|chr2:170996708-170996714|AATATTG/-|frameshift_variant;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.797119140625	2	493.779482	985.544411	1.0169	0.00050211	-2.8475	-0.001406	-1.8306	-0.00090391	493.7781004291007	106.43	0.42535	106.43	106.25	106.68	0					20	12	2	0	0	0	0.027866	1	13666	13666		55.504	0	1	61508			24463	10154	16821	16859	28378	28378					0.05106036723384477
IDEQQQATF	9	Unmodified	_IDEQQQATF_					0	0	0			REV__SPATA6-FAF1|1|fusion	REV__SPATA6-FAF1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8186645507812	2	540.253828	1078.4931	-0.011541	-6.235E-06	2.2635	0.0012228	2.2519	0.0012166	540.7568705738555	74.41	0.26423	74.147	73.966	74.231	-0.26325					7	5	2	0	0	0	0.024527	1	8783	8783		31.53	13.205	1	183870	+		24464	27735	16822	16860	28379	28379					-0.04300332041339061
IDETPLPSP	9	Unmodified	_IDETPLPSP_					0	0	0		ENSG00000250510|ENST00000311268|GPR162;nc|ENSG00000250510|Q16538-2|GPR162	ENSG00000250510|ENST00000311268|GPR162	ENSG00000250510|ENST00000311268|GPR162	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3132629394531	2	484.75039	967.486227	-0.67306	-0.00032627	-0.8595	-0.00041665	-1.5326	-0.00074291	484.7511450781365	44.155	0.55688	44.192	43.853	44.41	0.0369					18	15	2	0	0	0	0.024021	1	4151	4151		49.442	12.995	1	219630			24465	10849	16823	16861	28380	28380					0.0011835507809792034
IDFLNYLLTQ	10	Unmodified	_IDFLNYLLTQ_					0	0	0			REV__ENST00000483608.1_1_2:148705613-148710070:-|nuORF	REV__ENST00000483608.1_1_2:148705613-148710070:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.880859375	3	413.892173	1238.65469	-0.50683	-0.00020977	-0.26851	-0.00011113	-0.77534	-0.00032091	414.22577922705455	29.142	0.21738	28.969	28.808	29.025	-0.17258					5	4	2	0	0	0	0.03519	1	1762	1762		72.096	0	1	42394	+		24466	22244	16824	16862	28381	28381					0.04490836991772085
IDFTMFLTI	9	Unmodified	_IDFTMFLTI_					0	0	0		ENST00000431574.1_1_6:33306912-33307269:+|nuORF	ENST00000431574.1_1_6:33306912-33307269:+|nuORF	ENST00000431574.1_1_6:33306912-33307269:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.7865600585938	2	550.788461	1099.56237	0.39704	0.00021868	-3.8148	-0.0021011	-3.4178	-0.0018825	550.7863157282852	101	0.56162	100.87	100.66	101.22	-0.13156					23	13	3	0	0	0	0.59099	1	12517	12517		53.351	7.3995	1	286730			24467	14188	16825	16863	28382	28382					0.016570356538750275
IDGAVEDKH	9	Unmodified	_IDGAVEDKH_					0	0	0			REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.79620361328125	2	492.243264	982.471974	0.32867	0.00016179	-1.4203	-0.00069914	-1.0917	-0.00053736	492.2428882645102	47.753	0.22098	47.566	47.491	47.712	-0.18684					8	5	2	0	0	0	0.024323	1	4674	4674		27.882	6.9353	1	68410	+		24468	21341	16826	16864	28383	28383					-0.019962973501833403
IDGAYTDYIV	10	Unmodified	_IDGAYTDYIV_					0	0	0		nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.314208984375	2	565.274229	1128.53391	-0.54114	-0.00030589	-1.8592	-0.001051	-2.4003	-0.0013568	565.2722971831242	36.585	0.2108	36.585	36.474	36.685	0					8	5	2	0	0	0	0.03519	1	2933	2933		35.618	12.096	1	58423			24469	1193	16827	16865	28384	28384					-0.0252199072174335
IDGCGAPDR	9	Unmodified	_IDGCGAPDR_					0	0	0			REV__nc|ENSG00000165566|Q8N7J2-2|AMER2	REV__nc|ENSG00000165566|Q8N7J2-2|AMER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2301025390625	2	452.203084	902.391615	-0.31155	-0.00014088	1.6867	0.00076271	1.3751	0.00062183	452.2042250870304	26.516	0.17259	26.598	26.456	26.629	0.081293					5	3	2	0	0	0	0.024447	1	1297	1297		40.778	25.136	1	40251	+		24470	36875	16828	16866	28385	28385					-0.06348481944894502
IDGGTIHS	8	Unmodified	_IDGGTIHS_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2304382324219	2	400.200867	798.387182	0.82798	0.00033136	2.6643	0.0010662	3.4923	0.0013976	400.2025931028888	22.036	0.28431	22.036	21.868	22.152	0					8	5	2	0	0	0	0.027866	1	731	731		11.511	0	1	10455	+		24471	22131	16829	16867	28386	28386					-0.02007623096142197
IDGIFKVLERD	11	Unmodified	_IDGIFKVLERD_					0	0	0			REV__ENSG00000249581|ENST00000511148|CLRN2	REV__ENSG00000249581|ENST00000511148|CLRN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.57781982421875	3	435.578477	1303.7136	0.39261	0.00017101	-2.1089	-0.00091858	-1.7163	-0.00074757	435.57749282765735	110.43	0.71253	110.44	110.12	110.84	0.0069427					55	19	4	0	0	0	1.0592	1	13928	13928		22.562	0.87584	1	361140	+		24472	29017	16830	16868	28387	28387					0.07389313286080323
IDGIMLVLK	9	Unmodified	_IDGIMLVLK_					0	0	0			REV__ENSG00000121381|ENST00000240691|TAS2R9	REV__ENSG00000121381|ENST00000240691|TAS2R9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2822570800781	2	501.306821	1000.59909	-0.4105	-0.00020579	0.23072	0.00011566	-0.17978	-9.0124E-05	501.3068609990559	76.413	0.55576	76.244	76.054	76.61	-0.16854					21	12	2	0	0	0	0.024209	1	9056	9056		76.774	38.963	1	574830	+		24473	22593	16831	16869	28388	28388					0.09881332270447274
IDGKLKPS	8	Unmodified	_IDGKLKPS_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.27667236328125	2	429.258185	856.501818	0.018555	7.9648E-06	-0.92912	-0.00039883	-0.91057	-0.00039087	429.25789654095394	43.173	0.10985	42.935	42.879	42.989	-0.23736					4	2	2	0	0	0	0.027866	1	3921	3921		113.41	0	1	39938	+		24474	22797	16832	16870	28389	28389					0.06782686385804482
IDGLKPLL	8	Unmodified	_IDGLKPLL_					0	0	0		ENSG00000116688|ENST00000235329|MFN2;MFN2|p.M497V|1|0.58|ENSG00000116688|chr1:12004921-12004921|A/G|missense_variant;nc|ENSG00000116688|O95140-2|MFN2	ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.80242919921875	2	434.778754	867.542954	-0.14298	-6.2165E-05	3.3887	0.0014733	3.2457	0.0014112	434.7800180281577	66.498	0.47093	66.25	65.861	66.331	-0.24839					14	11	2	0	0	0	0.027866	1	7577	7577		44.117	1.7207	1	42965			24475	3565;18195	16833	16871	28390	28390					0.10388447425293634
IDGNRLMY	8	Unmodified	_IDGNRLMY_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.29547119140625	2	491.244752	980.474951	-0.17124	-8.4119E-05	3.4864	0.0017127	3.3151	0.0016285	491.2475421567726	56.665	0.17738	56.665	56.535	56.712	0					6	4	2	0	0	0	0.027866	1	6326	6326		60.294	23.135	1	32174	+		24476	26616	16834	16872	28391	28391					-0.016067454970425388
IDGVAYVY	8	Unmodified	_IDGVAYVY_					0	0	0			REV__ENSG00000197763|ENST00000524230|TXNRD3	REV__ENSG00000197763|ENST00000524230|TXNRD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.766357421875	2	450.229094	898.443634	-0.29084	-0.00013094	-0.33702	-0.00015174	-0.62786	-0.00028268	450.2277294700246	45.245	0.38182	44.992	44.709	45.091	-0.25252					17	9	3	0	0	0	0.027866	1	4249	4249		28.254	1.4582	1	187320	+		24477	28345	16835	16873	28392	28392					-0.009649952594827482
IDHEAYPD	8	Unmodified	_IDHEAYPD_					0	0	0		nc|ENSG00000100767|O95428-4|PAPLN;nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.800048828125	2	480.208889	958.403226	-0.29273	-0.00014057	-3.0661	-0.0014723	-3.3588	-0.0016129	480.20727035345755	26.252	1.4815	26.229	25.609	27.091	-0.023088					61	35	2	0	0	0	0.027866	1	1425	1425		47.916	0	1	77322			24478	18127	16836	16874	28393	28393					-0.07763961649914108
IDHEEVLEEP	10	Unmodified	_IDHEEVLEEP_					0	0	0			REV__nc|ENSG00000103248|Q2M296-4|MTHFSD	REV__nc|ENSG00000103248|Q2M296-4|MTHFSD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	605.8560791015625	2	605.285325	1208.5561	-1.466	-0.00088735	3.9103	0.0023668	2.4443	0.0014795	605.2874878753829	82.281	0.29674	82.307	82.147	82.444	0.025711					8	6	2	0	0	0	0.03519	1	10178	10178		15.642	0	1	32497	+		24479	21369	16837	16875	28394	28394					-0.03983811043940477
IDHLVTMKI	9	Oxidation (M)	_IDHLVTM(Oxidation (M))KI_		IDHLVTM(1)KI		IDHLVTM(140)KI	0	0	1		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD;BAIAP2-TBCD|1|fusion;nc|ENSG00000141556|Q9BTW9-3|TBCD;ENST00000571796.5_1_17:80853801-80866280:+|nuORF	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3027954101562	2	543.30481	1084.59507	-1.2747	-0.00069256	-2.2403	-0.0012172	-3.515	-0.0019097	543.3035353328938	74.367	1.592	74.376	74.051	75.643	0.0096512					86	39	4	0	0	0	0.028071	1	9011	9011		143.11	13.424	1	9757800			24480	5503	16838	16876	28395	28395		232			0.05615242776730156
IDHNQYKFG	9	Unmodified	_IDHNQYKFG_					0	0	0		ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2703247070312	2	561.272355	1120.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.073	1	26.904	26.404	27.404	-0.16816								0	0	0	0.63578	1	1459	1459		34.173	1.3601	1				24481	10024;1976	16839	16877	28396	28396					-0.025286157049322355
IDHSVHIF	8	Unmodified	_IDHSVHIF_					0	0	0		ENST00000531909.5_1_11:124966931-124967030:-|nuORF	ENST00000531909.5_1_11:124966931-124967030:-|nuORF	ENST00000531909.5_1_11:124966931-124967030:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2536926269531	2	484.253434	966.492316	0.17734	8.5876E-05	-0.33267	-0.0001611	-0.15533	-7.5221E-05	484.25323939594875	52.454	1.5806	52.306	51.985	53.566	-0.14723					85	41	4	0	0	0	0.75307	1	5611	5611		62.978	2.6845	1	9733500			24482	16273	16840	16878	28397	28397					0.007729181002900987
IDIISGTL	8	Unmodified	_IDIISGTL_					0	0	0		nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2;ENSG00000158578|ENST00000650242|ALAS2;ENST00000498636.1_1_X:55035677-55046849:-|nuORF;nc|ENSG00000158578|P22557-3|ALAS2	nc|ENSG00000158578|P22557-2|ALAS2	nc|ENSG00000158578|P22557-2|ALAS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.8391418457031	2	416.244744	830.474934	-1.5548	-0.00064718	3.357	0.0013973	1.8022	0.00075015	416.2460191499326	28.758	0.64005	28.513	28.241	28.881	-0.24524					36	14	3	0	0	0	0.027866	1	1676	1676		12.207	0	1	789000			24483	6687	16841	16879	28398	28398					0.05291577774630696
IDILINFKTT	10	Unmodified	_IDILINFKTT_					0	0	0		KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3433227539062	2	589.344989	1176.67542	-1.6034	-0.00094497	-2.0205	-0.0011907	-3.6239	-0.0021357	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.1266	1	11007	11007		29.17	1.2878	1	5827400			24484	17787	16842	16880	28399	28399					0.09415427371436635
IDILINFKTT	10	Unmodified	_IDILINFKTT_					0	0	0		KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3435668945312	2	589.344989	1176.67542	-0.33817	-0.0001993	-3.3398	-0.0019683	-3.6779	-0.0021676	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.1266	1	11013	11013		29.17	1.0886	1	6196800			24485	17787	16842	16880	28400	28400					0.09415427371436635
IDIMEKSQV	9	Unmodified	_IDIMEKSQV_					0	0	0			REV__nc|ENSG00000108344|O43242-2|PSMD3	REV__nc|ENSG00000108344|O43242-2|PSMD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3218383789062	2	531.778625	1061.5427	-0.73334	-0.00038998	-0.021955	-1.1675E-05	-0.7553	-0.00040165	531.7782451669569	75.528	0.44606	75.284	74.997	75.443	-0.24455					20	11	2	0	0	0	0.024337	1	9223	9223		41.427	0	1	859600	+		24486	21725	16843	16881	28401	28401					0.014386596431222642
IDISDYGTR	9	Unmodified	_IDISDYGTR_					0	0	0		nc|ENSG00000065717|Q04725-3|TLE2;nc|ENSG00000065717|Q04725-2|TLE2;ENSG00000065717|ENST00000262953|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.78564453125	2	520.256371	1038.49819	-0.62234	-0.00032378	-0.79017	-0.00041109	-1.4125	-0.00073487	520.2557614582281	78.134	0.78221	78.134	77.876	78.658	0					34	18	3	0	0	0	0.024374	1	9669	9669		25.574	12.762	1	335040			24487	18064	16844	16882	28402	28402					-0.01952028178720866
IDISDYGTR	9	Unmodified	_IDISDYGTR_					0	0	0		nc|ENSG00000065717|Q04725-3|TLE2;nc|ENSG00000065717|Q04725-2|TLE2;ENSG00000065717|ENST00000262953|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.256371	1038.49819	-0.50424	-0.00026233	-2.0759	-0.00108	-2.5801	-0.0013423	520.2552868055275	78.258	0.34448	78.003	77.826	78.17	-0.25471	-0.10129	-0.00055733	NaN	25.574	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57186			24488	18064	16844	16882							-0.01952028178720866
IDISDYGTR	9	Unmodified	_IDISDYGTR_					0	0	0		nc|ENSG00000065717|Q04725-3|TLE2;nc|ENSG00000065717|Q04725-2|TLE2;ENSG00000065717|ENST00000262953|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.256371	1038.49819	0.70595	0.00036728	-3.7557	-0.0019539	-3.0498	-0.0015867	520.2538388346683	78.326	0.38399	78.094	77.75	78.134	-0.23141	-0.010216	-0.0023052	NaN	25.574	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52313			24489	18064	16844	16882							-0.01952028178720866
IDKECILEI	9	Unmodified	_IDKECILEI_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2891845703125	2	538.288825	1074.5631	-0.5528	-0.00029757	0.6476	0.0003486	0.094802	5.1031E-05	538.289016571707	89.635	0.8485	89.497	89.189	90.038	-0.13762					36	19	2	0	0	0	0.45795	1	10966	10966		62.107	3.3255	1	1287100	+		24490	25290	16845	16883	28403	28403					0.028798303029361705
IDKGKKRTL	9	Unmodified	_IDKGKKRTL_					0	0	0		nc|ENSG00000168803|Q6DHV7-2|ADAL;nc|ENSG00000168803|Q6DHV7-3|ADAL;ENSG00000168803|ENST00000562188|ADAL	nc|ENSG00000168803|Q6DHV7-2|ADAL	nc|ENSG00000168803|Q6DHV7-2|ADAL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.8028564453125	2	529.837665	1057.66078	0.87175	0.00046189	0.92976	0.00049262	1.8015	0.00095451	529.8382440076193	64.161	0.25336	64.206	64.081	64.335	0.045502					11	6	2	0	0	0	0.024427	1	7481	7481		26.693	6.6961	1	163290			24491	7865	16846	16884	28404	28404					0.13425400013943545
IDKGMKYG	8	Unmodified	_IDKGMKYG_					0	0	0		ENST00000399417.3_1_X:106595227-106595875:-|nuORF	ENST00000399417.3_1_X:106595227-106595875:-|nuORF	ENST00000399417.3_1_X:106595227-106595875:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.268798828125	2	456.236396	910.458238	-0.69073	-0.00031514	-3.9022	-0.0017803	-4.593	-0.0020955	456.2345781830853	47.413	0.099327	47.472	47.423	47.522	0.059097					4	2	2	0	0	0	0.027866	1	4696	4696		33.516	0	1	93882			24492	13645	16847	16885	28405	28405					-0.0005724638298261198
IDKKLTTL	8	Unmodified	_IDKKLTTL_					0	0	0		UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant;ENSG00000163960|ENST00000296328|UBXN7	UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.26361083984375	2	466.294768	930.574983	-1.1884	-0.00055413	-3.95	-0.0018419	-5.1384	-0.002396	466.2932093225458	37.882	0.2188	37.663	37.5	37.718	-0.21848					10	5	2	0	0	0	0.027866	1	3042	3042		52.937	15.778	1	280620			24493	7182	16848	16886	28406	28406					0.10691815108407354
IDKKQNMLI	9	Oxidation (M)	_IDKKQNM(Oxidation (M))LI_		IDKKQNM(1)LI		IDKKQNM(74)LI	0	0	1			REV__nc|ENSG00000139324|Q6ZXV5|TMTC3	REV__nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.814453125	2	559.815541	1117.61653	0.27362	0.00015318	-0.36085	-0.00020201	-0.087227	-4.8831E-05	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.31037	1	9791	9791		74.255	15.473	1	35108000	+		24494	23934	16849	16887	28407	28407		712			0.06242627805431766
IDKLINPACSI	11	Carbamidomethyl (C)	_IDKLINPAC(Carbamidomethyl (C))SI_	IDKLINPAC(1)SI		IDKLINPAC(48)SI		0	1	0			REV__ENST00000447544.6_2_7:80305701-80305935:+|nuORF	REV__ENST00000447544.6_2_7:80305701-80305935:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3362426757812	2	622.339381	1242.66421	-2.2816	-0.00142	-2.2144	-0.0013781	-4.496	-0.0027981	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	0.94988	1	13525	13525		47.96	6.5329	1	1465400	+		24495	32650	16850	16888	28408	28408	431				0.05258282005638648
IDKLLLSVF	9	Unmodified	_IDKLLLSVF_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2877197265625	2	524.326068	1046.63758	-0.18013	-9.4447E-05	-1.083	-0.00056782	-1.2631	-0.00066227	524.3251844979721	27.787	0.4463	27.63	27.434	27.88	-0.15601					21	10	3	0	0	0	0.023274	1	1535	1535		67.494	8.7117	1	287050	+		24496	24671	16851	16889	28409	28409					0.116129611766155
IDKMDLLEP	9	Unmodified	_IDKMDLLEP_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3291625976562	2	537.281	1072.54745	0.21151	0.00011364	1.6046	0.0008621	1.8161	0.00097575	537.7845717768241	19.132	0.29641	18.972	18.738	19.034	-0.16079					6	5	2	0	0	0	0.022832	1	382	382		104.75	26.483	1	13119			24497	8744	16852	16890	28410	28410					0.01407543785899179
IDKNYGVPPPF	11	Unmodified	_IDKNYGVPPPF_					0	0	0			REV__nc|ENSG00000102081|Q06787-11|FMR1	REV__nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2206115722656	3	416.220401	1245.63937	2.0985	0.00087345	-0.95733	-0.00039846	1.1412	0.00047499	416.21973212096015	24.551	2.2653	24.37	23.582	25.848	-0.18089					142	52	4	0	0	0	0.87596	2	1086	1025;1086		53.089	10.225	1	1613200	+		24498	21286	16853	16891	28411;28412	28412					0.02637970194564332
IDKPVTALQD	10	Unmodified	_IDKPVTALQD_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.3046875	2	550.303321	1098.59209	1.4239	0.00078355	2.9768	0.0016382	4.4007	0.0024217	550.3047371925553	16.582	0.27276	16.429	16.294	16.567	-0.15376					15	7	3	0	0	0	1.1265	1	94	94		24.519	4.5224	1	64510	+		24499	36644	16854	16892	28413	28413					0.04673690923573304
IDKRPYLTP	9	Unmodified	_IDKRPYLTP_					0	0	0			REV__ENST00000569069.1_1_15:75658861-75660070:-|nuORF	REV__ENST00000569069.1_1_15:75658861-75660070:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7798461914062	2	551.816399	1101.61824	-0.46874	-0.00025866	1.2713	0.0007015	0.80252	0.00044285	551.816448375997	45.109	0.24829	45.153	44.966	45.214	0.043877					10	6	2	0	0	0	0.024405	1	4303	4303		27.882	0	1	112880	+		24500	35364	16855	16893	28414	28414					0.07150004885693306
IDKSTTNLM	9	Unmodified	_IDKSTTNLM_					0	0	0			REV__ENST00000379687.7_1_X:19984558-19984744:-|nuORF	REV__ENST00000379687.7_1_X:19984558-19984744:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8431396484375	2	511.762975	1021.5114	-0.48559	-0.00024851	-1.2006	-0.00061442	-1.6862	-0.00086293	511.7622947082421	75.971	0.32333	75.726	75.512	75.836	-0.24455					10	8	2	0	0	0	0.024405	1	9307	9307		35.618	0	1	78216	+		24501	31443	16856	16894	28415	28415					0.001500866090054842
IDKSVLLFL	9	Unmodified	_IDKSVLLFL_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|154|1|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|154|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	524.326068	1046.63758	-0.77837	-0.00040812	-0.92221	-0.00048354	-1.7006	-0.00089166	524.3253970578428	27.717	0.36947	27.549	27.359	27.729	-0.16816					20	8	3	0	0	0	0.023181	1	1542	1542		71.296	12.514	1	298950	+		24502	36252	16857	16895	28416	28416					0.116129611766155
IDKTAGKI	8	Unmodified	_IDKTAGKI_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000154608|Q96L14|CEP170P1;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000468697.1_1_1:243299431-243299530:-|nuORF;ENST00000439296.2_1_1:243289753-243299542:-|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.25830078125	2	423.258185	844.501818	0.58359	0.00024701	-0.48765	-0.0002064	0.095939	4.0607E-05	423.2578566379587	32.562	0.83509	32.369	31.986	32.821	-0.19261					45	19	3	0	0	0	0.42912	1	2251	2251		93.195	0	1	1167700			24503	5680	16858	16896	28417	28417					0.07334686385820532
IDKTKVQN	8	Unmodified	_IDKTKVQN_					0	0	0		nc|ENSG00000070081|P80303-2|NUCB2;ENSG00000070081|ENST00000529010|NUCB2	nc|ENSG00000070081|P80303-2|NUCB2	nc|ENSG00000070081|P80303-2|NUCB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2716369628906	2	473.271824	944.529095	0.18796	8.8957E-05	0.0495	2.3427E-05	0.23746	0.00011238	473.27170194724437	34.998	1.0286	34.782	34.467	35.496	-0.21555					54	25	4	0	0	0	0.27973	1	2622	2622		120.62	26.615	1	2344000			24504	1417	16859	16897	28418	28418					0.05461169926184084
IDKTKVQN	8	Unmodified	_IDKTKVQN_					0	0	0		nc|ENSG00000070081|P80303-2|NUCB2;ENSG00000070081|ENST00000529010|NUCB2	nc|ENSG00000070081|P80303-2|NUCB2	nc|ENSG00000070081|P80303-2|NUCB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.2711181640625	2	473.271824	944.529095	-0.2799	-0.00013247	0.27077	0.00012815	-0.0091222	-4.3173E-06	473.27183540963586	34.96	1.0319	34.747	34.44	35.472	-0.21246					51	25	4	0	0	0	0.56592	1	2598	2598		79.451	0	1	2414100			24505	1417	16859	16897	28419	28419					0.05461169926184084
IDKTLGIRG	9	Unmodified	_IDKTLGIRG_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2923889160156	2	486.795466	971.57638	-0.17467	-8.5031E-05	4.2	0.0020445	4.0253	0.0019595	486.79708679836517	55.34	0.6518	55.19	55.132	55.784	-0.15036					24	17	2	0	0	0	0.024367	1	6135	6135		29.17	0	1	1897600			24506	9849	16860	16898	28420	28420					0.08945449197187827
IDKTLVII	8	Unmodified	_IDKTLVII_					0	0	0			REV__nc|ENSG00000176018|Q7Z3D4-2|LYSMD3	REV__nc|ENSG00000176018|Q7Z3D4-2|LYSMD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.7996520996094	2	457.799686	913.584819	-0.11743	-5.3761E-05	0.14809	6.7794E-05	0.030653	1.4033E-05	457.79960293402837	72.867	1.0315	72.603	72.3	73.331	-0.26479					39	24	3	0	0	0	0.59392	1	8563	8563		76.847	5.5509	1	613050	+		24507	26988	16861	16899	28421	28421					0.12457003113809151
IDKVLLVMD	9	Unmodified	_IDKVLLVMD_					0	0	0		ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1	ENSG00000136643|ENST00000366960|RPS6KC1	ENSG00000136643|ENST00000366960|RPS6KC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3037109375	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.62163	1	11188	11188		51.335	3.4199	1	11993000			24508	5034	16862	16900	28422	28422					0.06840724545213561
IDKVSVNK	8	Unmodified	_IDKVSVNK_					0	0	0			REV__ENSG00000101210|ENST00000217182|EEF1A2	REV__ENSG00000101210|ENST00000217182|EEF1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.7689514160156	2	451.768917	901.523281	-0.19642	-8.8737E-05	0.059184	2.6737E-05	-0.13724	-6.2E-05	451.76888848152095	27.443	1.1052	27.287	26.93	28.035	-0.15664					65	26	4	0	0	0	0.53523	1	1485	1485		82.305	0	1	4352800	+		24509	21201	16863	16901	28423	28423					0.06858071414524147
IDLDEWWA	8	Unmodified	_IDLDEWWA_					0	0	0		ENST00000575894.1_1_16:697728-698187:+|nuORF;ENSG00000172366|ENST00000307650|MCRIP2	ENST00000575894.1_1_16:697728-698187:+|nuORF	ENST00000575894.1_1_16:697728-698187:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.7919921875	2	524.242732	1046.47091	0.095613	5.0125E-05	1.8513	0.00097052	1.9469	0.0010206	525.2432997304984	61.134	0.14481	61.205	61.131	61.276	0.071129					7	3	3	0	0	0	0.027866	1	6994	6994		42.474	0	1	77451			24510	8269	16864	16902	28424	28424					-0.0504651171909245
IDLGVTRV	8	Unmodified	_IDLGVTRV_					0	0	0		ENSG00000162105|ENST00000601538|SHANK2;nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7638244628906	2	436.763635	871.512717	-0.30614	-0.00013371	0.57047	0.00024916	0.26434	0.00011545	436.7637826825393	26.882	0.98042	26.714	26.379	27.359	-0.16816					52	22	4	0	0	0	0.44658	1	1445	1445		90.777	8.4716	1	2005400			24511	6920	16865	16903	28425	28425					0.071820887600893
IDLGVYVDGFI	11	Unmodified	_IDLGVYVDGFI_					0	0	0		ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENST00000418595.1_1_6:112938557-112938875:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.21832275390625	3	404.216657	1209.62814	-0.029885	-1.208E-05	3.9927	0.0016139	3.9628	0.0016018	404.21827196086645	57.238	1.0137	57.071	56.751	57.764	-0.1672					88	26	5	0	0	0	0.97516	1	6232	6232		42.338	8.2516	1	13924000			24512	13939	16866	16904	28426	28426					0.031711481004322195
IDLGVYVDGFI	11	Unmodified	_IDLGVYVDGFI_					0	0	0		ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENST00000418595.1_1_6:112938557-112938875:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.2181396484375	3	404.216657	1209.62814	1.0514	0.00042499	2.85	0.001152	3.9014	0.001577	404.21777515581726	57.25	1.112	57.048	56.747	57.859	-0.20208					101	29	5	0	0	0	0.97516	1	6238	6238		42.338	10.304	1	15287000			24513	13939	16866	16904	28427	28427					0.031711481004322195
IDLHIDVSF	9	Unmodified	_IDLHIDVSF_					0	0	0		ENST00000503561.7_1_5:50057675-50130728:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3038940429688	2	529.779482	1057.54441	-0.1459	-7.7293E-05	-0.68373	-0.00036223	-0.82963	-0.00043952	529.7787875090946	52.381	0.54255	52.197	51.852	52.395	-0.18405					19	13	2	0	0	0	0.024436	1	5431	5431		30.504	0	1	127740			24514	6239	16867	16905	28428	28428					0.017940367233904908
IDLISSLLI	9	Unmodified	_IDLISSLLI_					0	0	0		ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.782470703125	2	493.810251	985.605948	0.3739	0.00018464	0.55569	0.0002744	0.92959	0.00045904	493.81038942163497	46.763	0.52318	46.763	46.48	47.003	0					36	13	4	0	0	0	0.024381	1	4627	4627		37.159	0	1	1143400			24515	11080	16868	16906	28429	28429					0.11256968422685532
IDLNEHKDYF	10	Unmodified	_IDLNEHKDYF_					0	0	0		ENSG00000198382|ENST00000356136|UVRAG;ENST00000533454.5_2_11:75672590-75724017:+|nuORF	ENSG00000198382|ENST00000356136|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.8523254394531	3	431.875182	1292.60372	0.16124	6.9638E-05	-1.2829	-0.00055404	-1.1216	-0.0004844	431.87476302443275	45.907	0.1685	45.958	45.83	45.998	0.051395					5	4	2	0	0	0	0.03519	1	4421	4421		51.528	38.57	1	74950			24516	10130	16869	16907	28430	28430					-0.030881120531148554
IDLNGLSQ	8	Unmodified	_IDLNGLSQ_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.9065856933594	2	430.229625	858.444697	-0.50604	-0.00021771	-0.47454	-0.00020416	-0.98058	-0.00042187	430.22934166958714	38.234	0.25341	38.013	37.866	38.119	-0.22149					10	7	2	0	0	0	0.027866	1	3149	3149		23.042	0	1	111890	+		24517	28481	16870	16908	28431	28431					0.009812191094397349
IDLQKIREI	9	Unmodified	_IDLQKIREI_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3423461914062	2	564.342781	1126.67101	-1.3171	-0.0007433	0.87573	0.00049421	-0.44138	-0.00024909	564.343325512874	46.378	1.1001	46.227	45.954	47.054	-0.15157					94	29	5	0	0	0	0.17845	1	4546	4546		93.143	2.7734	1	11423000	+		24518	19966	16871	16909	28432	28432					0.11273962948507688
IDLQKIREI	9	Unmodified	_IDLQKIREI_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.3424682617188	2	564.342781	1126.67101	-0.66336	-0.00037436	0.024104	1.3603E-05	-0.63926	-0.00036076	564.3427576634141	46.239	1.0678	46.291	46.031	47.099	0.051395					86	29	5	0	0	0	0.15366	1	4524	4524		98.629	13.469	1	10787000	+		24519	19966	16871	16909	28433	28433					0.11273962948507688
IDLQSRIK	8	Unmodified	_IDLQSRIK_					0	0	0			REV__nc|ENSG00000087470|O00429-7|DNM1L	REV__nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.79656982421875	2	486.795466	971.57638	-0.20026	-9.7483E-05	4.2468	0.0020673	4.0466	0.0019698	486.79714067242406	59.284	0.62885	59.37	59.063	59.692	0.085682					42	16	3	0	0	0	0.68164	1	6695	6695		68.787	4.5796	1	4054700	+		24520	36492	16872	16910	28434	28434					0.08945449197176458
IDLRKGKLN	9	Unmodified	_IDLRKGKLN_					0	0	0			REV__ENSG00000120725|ENST00000394817|SIL1	REV__ENSG00000120725|ENST00000394817|SIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7694702148438	2	528.82984	1055.64513	-0.42203	-0.00022318	-1.4392	-0.00076111	-1.8613	-0.00098429	529.3305088064669	39.984	0.43895	39.984	39.808	40.247	0					19	11	2	0	0	0	0.024427	1	3520	3520		34.173	11.13	1	614600	+		24521	22555	16873	16911	28435	28435					0.11953113496906553
IDLRKGQGAV	10	Unmodified	_IDLRKGQGAV_					0	0	0			REV__FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	REV__FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7694702148438	2	528.811648	1055.60874	-0.43293	-0.00022894	0.067021	3.5442E-05	-0.36591	-0.0001935	529.3130664538936	40.063	0.40365	40.063	39.843	40.247	0					22	10	3	0	0	0	0.03519	1	3520	3520		32.812	10.853	1	406150	+		24522	36043	16874	16912	28436	28436					0.08316236600194316
IDLSASLVL	9	Unmodified	_IDLSASLVL_					0	0	0		ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2;ENST00000580882.5_1_17:26966325-26972074:-|nuORF	ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7770690917969	2	465.778951	929.543348	0.30012	0.00013979	-3.2664	-0.0015214	-2.9663	-0.0013816	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.98128	1	10039	10039		24.203	0	1	1281300			24523	810	16875	16913	28437	28437					0.07575822354453976
IDLTPIVVE	9	Unmodified	_IDLTPIVVE_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.7909240722656	2	499.792058	997.569563	-0.46746	-0.00023364	-2.6833	-0.0013411	-3.1508	-0.0015747	499.7906557352374	29.635	0.96934	29.485	29.129	30.099	-0.14952					45	22	4	0	0	0	0.90698	1	1836	1836		31.955	4.0726	1	4404700			24524	3129	16876	16914	28438	28438					0.07068091525945874
IDLWRGRRCC	10	Unmodified	_IDLWRGRRCC_					0	0	0		ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.26617431640625	3	426.549981	1276.62811	-0.29728	-0.00012681	3.1643	0.0013497	2.867	0.0012229	426.5512791368357	43.481	0.32736	43.244	43.024	43.351	-0.23736					21	8	3	0	0	0	0.03519	1	3990	3990		33.922	15.66	1	393960			24525	9354	16877	16915	28439	28439					0.000865463478021411
IDLYRYDD	8	Unmodified	_IDLYRYDD_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3422241210938	2	536.750921	1071.48729	-0.72682	-0.00039012	0.069392	3.7246E-05	-0.65742	-0.00035287	536.7499287016533	50.417	0.19888	50.498	50.41	50.609	0.080994					6	5	2	0	0	0	0.027866	1	5208	5208		42.396	0	1	152740			24526	6073	16878	16916	28440	28440					-0.04559430552990307
IDMGEVLIL	9	Unmodified	_IDMGEVLIL_					0	0	0			REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.801025390625	2	501.780636	1001.54672	0.17206	8.6338E-05	-1.5492	-0.00077734	-1.3771	-0.000691	501.7802667238972	46.753	0.27014	46.753	46.659	46.93	0					10	6	2	0	0	0	0.024294	1	4646	4646		55.504	0	1	269370	+		24527	20962	16879	16917	28441	28441					0.046007491368413866
IDMKKRYERL	10	Unmodified	_IDMKKRYERL_					0	0	0			REV__nc|ENSG00000116747|P10155-3|RO60	REV__nc|ENSG00000116747|P10155-3|RO60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2301330566406	3	451.25534	1350.74419	0.15014	6.7754E-05	2.7531	0.0012423	2.9032	0.0013101	451.25640213654884	26.702	0.41926	26.702	26.489	26.908	0					20	9	3	0	0	0	0.03519	1	1393	1393		55.084	1.487	1	127900	+		24528	22300	16880	16918	28442	28442					0.08284768399494169
IDMKKRYERL	10	Unmodified	_IDMKKRYERL_					0	0	0			REV__nc|ENSG00000116747|P10155-3|RO60	REV__nc|ENSG00000116747|P10155-3|RO60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2301025390625	3	451.25534	1350.74419	-0.23946	-0.00010806	2.998	0.0013529	2.7586	0.0012448	451.25645768487414	26.787	0.33194	26.766	26.488	26.82	-0.020937					13	7	2	0	0	0	0.03519	1	1377	1377		50.034	2.8058	1	71498	+		24529	22300	16880	16918	28443	28443					0.08284768399494169
IDMVQGSMT	9	Oxidation (M)	_IDMVQGSM(Oxidation (M))T_		IDMVQGSM(1)T		IDM(-34)VQGSM(34)T	0	0	1			REV__nc|ENSG00000143995|O00470-2|MEIS1	REV__nc|ENSG00000143995|O00470-2|MEIS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.21826171875	2	499.220085	996.425618	0.37475	0.00018708	-3.9535	-0.0019737	-3.5787	-0.0017866	499.2180303778393	32.423	0.83678	32.23	31.942	32.779	-0.19261					51	19	4	0	0	0	0.70156	1	2236	2236		45.972	7.1661	2	2887300	+		24530	36742	16881	16919	28444	28444		973			-0.07273821568117
IDNDGFEDV	9	Unmodified	_IDNDGFEDV_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.805419921875	2	512.216911	1022.41927	-0.89105	-0.00045641	2.1402	0.0010963	1.2492	0.00063986	512.2178160780877	80.177	0.63058	80.198	79.897	80.528	0.021446					26	14	3	0	0	0	0.024447	1	9901	9901		32.812	11.127	1	385830			24531	3420	16882	16920	28445	28445					-0.09104300203648563
IDNDGFEDV	9	Unmodified	_IDNDGFEDV_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.216911	1022.41927	-0.62733	-0.00032133	1.9496	0.0009986	1.3222	0.00067727	512.2176773259639	80.166	0.58913	80.166	79.911	80.5	0	-0.034611	-1.7857E-05	NaN	32.812	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351250			24532	3420	16882	16920							-0.09104300203648563
IDNEMQKY	8	Oxidation (M)	_IDNEM(Oxidation (M))QKY_		IDNEM(1)QKY		IDNEM(85)QKY	0	0	1			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7357788085938	2	528.736957	1055.45936	-1.1176	-0.00059094	1.2084	0.00063892	0.090756	4.7986E-05	528.7373703189725	60.477	0.63728	60.301	59.998	60.635	-0.1761					41	15	3	0	0	0	0.50717	1	6733	6733		84.916	10.66	1	1803800	+		24533	23899	16883	16921	28446	28446		710			-0.06615076804746423
IDNKIQSI	8	Unmodified	_IDNKIQSI_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.78436279296875	2	465.766374	929.518196	-0.32158	-0.00014978	2.6661	0.0012418	2.3446	0.001092	465.7678542928816	42.548	0.37123	42.316	42.234	42.605	-0.23186					11	9	2	0	0	0	0.027866	1	3819	3819		134.81	12.635	1	99770	+		24534	27880	16884	16922	28447	28447					0.05061767551910634
IDNKLKLS	8	Unmodified	_IDNKLKLS_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.784423828125	2	465.784567	929.554582	0.014969	6.9724E-06	-0.59589	-0.00027756	-0.58092	-0.00027058	465.78429135893896	42.389	1.4234	42.266	41.888	43.311	-0.12299					87	37	4	0	0	0	0.25873	2	3809	3809;3820		129.68	7.5066	1	14550000	+		24535	28409	16885	16923	28448;28449	28448					0.08698644448600135
IDNKLKLS	8	Unmodified	_IDNKLKLS_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.78436279296875	2	465.784567	929.554582	-0.31787	-0.00014806	-0.34478	-0.00016059	-0.66265	-0.00030865	465.78441208050924	42.564	1.598	42.332	41.971	43.569	-0.23186					104	42	5	0	0	0	0.18427	1	3819	3819		143.11	8.2961	1	14954000	+		24536	28409	16885	16923	28450	28450					0.08698644448600135
IDNKRKDL	8	Unmodified	_IDNKRKDL_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2871398925781	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.95679	1	10599	10599		44.117	0	1	10074000	+		24537	22644	16886	16924	28451	28451					0.06628261191792717
IDNLKDQAI	9	Unmodified	_IDNLKDQAI_					0	0	0			REV__RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	REV__RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7432861328125	2	515.282389	1028.55022	0.5473	0.00028202	-3.9822	-0.002052	-3.4349	-0.0017699	515.280782329559	69.582	0.87014	69.289	69.09	69.96	-0.29292					42	21	3	0	0	0	0.024511	1	8442	8442		13.454	0	1	226260	+		24538	22070	16887	16925	28452	28452					0.037091352350216766
IDPFRPLL	8	Unmodified	_IDPFRPLL_					0	0	0		ENST00000537838.5_1_12:7024996-7025840:+|nuORF	ENST00000537838.5_1_12:7024996-7025840:+|nuORF	ENST00000537838.5_1_12:7024996-7025840:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.31048583984375	2	485.789653	969.564752	0.76713	0.00037267	2.1182	0.001029	2.8853	0.0014017	485.79076566222653	74.579	0.58788	74.396	74.137	74.725	-0.18279					32	13	4	0	0	0	0.027866	1	8825	8825		17.365	0	1	348130			24539	16378	16888	16926	28453	28453					0.07875252173846548
IDPGFMIYYQS	11	Unmodified	_IDPGFMIYYQS_					0	0	0			REV__ENSG00000269058|ENST00000269881|CALR3	REV__ENSG00000269058|ENST00000269881|CALR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.2873840332031	3	445.209285	1332.60602	-0.0086042	-3.8306E-06	0.64938	0.00028911	0.64078	0.00028528	445.2098281819759	35.691	0.3334	35.493	35.209	35.542	-0.19829					11	8	2	0	0	0	0.02477	1	2676	2676		12.433	0	1	178670	+		24540	29155	16889	16927	28454	28454					-0.0469739963966731
IDPKLLKRLF	10	Unmodified	_IDPKLLKRLF_					0	0	0			REV__nc|ENSG00000172171|Q96QE5-4|TEFM	REV__nc|ENSG00000172171|Q96QE5-4|TEFM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.90087890625	2	621.900266	1241.78598	0.31982	0.0001989	1.5039	0.00093526	1.8237	0.0011342	622.4027589150551	105.92	0.44003	105.92	105.73	106.17	-0.0013123					35	15	4	0	0	0	1.1197	1	13555	13555		20.947	0	1	756240	+		24541	26641	16890	16928	28455	28455					0.1747569215033309
IDPKLLKRLF	10	Unmodified	_IDPKLLKRLF_					0	0	0			REV__nc|ENSG00000172171|Q96QE5-4|TEFM	REV__nc|ENSG00000172171|Q96QE5-4|TEFM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.9026489257812	2	621.900266	1241.78598	-0.5035	-0.00031313	2.0217	0.0012573	1.5182	0.00094415	621.9012393385995	106.03	0.34787	106.03	105.83	106.18	0.00014496					28	12	3	0	0	0	1.1096	1	13516	13516		15.642	0	1	559380	+		24542	26641	16890	16928	28456	28456					0.1747569215033309
IDPLILELI	9	Unmodified	_IDPLILELI_					0	0	0		FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN	FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3049926757812	2	519.825901	1037.63725	-0.57456	-0.00029867	2.5022	0.0013007	1.9276	0.001002	520.3283884891237	93.532	0.17044	93.528	93.41	93.581	-0.0042038					5	3	2	0	0	0	0.024381	1	11854	11854		29.15	10.825	1	32932			24543	2810	16891	16929	28457	28457					0.11993541456763523
IDPSAASILM	10	Unmodified	_IDPSAASILM_					0	0	0			REV__ENSG00000165891|ENST00000322886|E2F7;REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3229675292969	2	509.267893	1016.52123	0.5325	0.00027118	-3.7349	-0.0019021	-3.2024	-0.0016309	509.26589504780816	77.928	0.88714	77.685	77.32	78.207	-0.24232					45	20	3	0	0	0	0.03519	1	9361	9361		71.296	23.638	1	423860	+		24544	25941;34936	16892	16930	28458	28458					0.013632746144025987
IDQKLSSLE	9	Unmodified	_IDQKLSSLE_					0	0	0			REV__ENSG00000153157|ENST00000283141|SYCP2L	REV__ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2655639648438	2	516.782222	1031.54989	-0.080392	-4.1545E-05	0.030271	1.5644E-05	-0.050121	-2.5901E-05	516.7834414930591	57.297	0.6451	57.133	56.71	57.355	-0.16431					18	17	2	0	0	0	0.022587	1	6410	6410		96.19	24.895	1	124400	+		24545	24889	16893	16931	28459	28459					0.03537715515221862
IDQLLEARP	9	Unmodified	_IDQLLEARP_					0	0	0			REV__ENSG00000187650|ENST00000339485|VMAC	REV__ENSG00000187650|ENST00000339485|VMAC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3268432617188	2	527.798206	1053.58186	-0.10653	-5.6225E-05	-2.1143	-0.0011159	-2.2208	-0.0011721	527.7973818476827	58.067	0.5067	58.158	57.979	58.486	0.091217					15	13	2	0	0	0	0.024313	1	6456	6456		51.193	19.663	1	137080	+		24546	27955	16894	16932	28460	28460					0.05721127988999797
IDQNLRSLL	9	Unmodified	_IDQNLRSLL_					0	0	0			REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3118896484375	2	536.31148	1070.60841	0.59805	0.00032074	-0.10153	-5.4451E-05	0.49652	0.00026629	536.3114599438708	59.499	1.1573	59.299	58.708	59.866	-0.20016					83	29	4	0	0	0	0.086035	1	6751	6751		115.49	24.893	1	13592000	+		24547	26573	16895	16933	28461	28461					0.07592816880332975
IDQNLRSLL	9	Unmodified	_IDQNLRSLL_					0	0	0			REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3117065429688	2	536.31148	1070.60841	-0.33612	-0.00018026	0.72478	0.00038871	0.38866	0.00020844	536.3118872543531	59.151	1.0621	59.237	58.666	59.728	0.085682					75	25	4	0	0	0	0.15366	2	6662	6662;6687		98.629	21.312	1	10184000	+		24548	26573	16895	16933	28462;28463	28462					0.07592816880332975
IDQNLRSLL	9	Unmodified	_IDQNLRSLL_					0	0	0			REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	536.31148	1070.60841	-0.33612	-0.00018026	0.72478	0.00038871	0.38866	0.00020844	536.3118872543531	59.151	1.0621	59.237	58.666	59.728	0.085682	-0.037458	0.00060443	NaN	115.49	75	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10184000	+		24549	26573	16895	16933							0.07592816880332975
IDQSGGINLL	10	Unmodified	_IDQSGGINLL_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MSMS	OPSCC_39_ClassI_Rep-1	1	515.281005859375	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.478	1	83.478	82.978	83.978	0								0	0	0	0.23192	1	10438	10438		131.03	1.6101	1		+		24550	28459	16896	16934	28464	28464					0.03709135235044414
IDRALIVVP	9	Unmodified	_IDRALIVVP_					0	0	0		ENSG00000153914|ENST00000334121|SREK1;ENST00000520058.1_1_5:65440204-65449453:+|nuORF;ENST00000380918.7_1_5:65440973-65454737:+|nuORF	ENSG00000153914|ENST00000334121|SREK1;ENST00000380918.7_1_5:65440973-65454737:+|nuORF	ENSG00000153914|ENST00000334121|SREK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7898864746094	2	498.316035	994.617516	-0.19739	-9.8365E-05	0.65248	0.00032514	0.45509	0.00022678	498.31620595214645	73.337	0.22828	73.347	73.29	73.519	0.0096512					8	5	2	0	0	0	0.024292	1	8879	8879		19.104	0	1	89447			24551	6365;13325	16897	16935	28465	28465					0.11999210236660929
IDRGLSQLD	9	Unmodified	_IDRGLSQLD_					0	0	0			REV__ENSG00000168065|ENST00000301891|SLC22A11	REV__ENSG00000168065|ENST00000301891|SLC22A11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8173828125	2	508.772188	1015.52982	0.35828	0.00018229	4.3436	0.0022099	4.7019	0.0023922	508.77354303299063	68.434	0.39828	68.203	68	68.398	-0.23048					14	9	2	0	0	0	0.024466	1	7920	7920		31.53	0	1	153790	+		24552	26225	16898	16936	28466	28466					0.022679645752418764
IDRGLSQLD	9	Unmodified	_IDRGLSQLD_					0	0	0			REV__ENSG00000168065|ENST00000301891|SLC22A11	REV__ENSG00000168065|ENST00000301891|SLC22A11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.772188	1015.52982	0.23932	0.00012176	3.4857	0.0017734	3.725	0.0018952	508.7736032486879	68.238	0.87247	68.257	67.892	68.764	0.018913	0.066905	-0.0002496	NaN	36.447	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	860990	+		24553	26225	16898	16936							0.022679645752418764
IDRNEPLW	8	Unmodified	_IDRNEPLW_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-7|AKNA	REV__nc|ENSG00000106948|Q7Z591-7|AKNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7694702148438	2	521.769448	1041.52434	-0.24991	-0.0001304	-1.653	-0.0008625	-1.9029	-0.0009929	521.7682471073881	52.612	0.57895	52.354	52.065	52.644	-0.25838					36	14	3	0	0	0	0.6248	1	5465	5465		73.975	5.49	1	2450000	+		24554	21648	16899	16937	28467	28467					0.005242857834218739
IDRNIQAT	8	Unmodified	_IDRNIQAT_					0	0	0		TNFAIP3|p.P457Lfs*20|1|0.19|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant;ENSG00000118503|ENST00000612899|TNFAIP3	TNFAIP3|p.P457Lfs*20|1|0.19|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant	TNFAIP3|p.P457Lfs*20|1|0.19|ENSG00000118503|chr6:137878808-137878808|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7651672363281	2	465.753798	929.493044	1.1664	0.00054327	-2.1555	-0.0010039	-0.98909	-0.00046067	465.75268729297466	33.098	0.93188	33.155	32.683	33.615	0.056568					61	24	3	0	0	0	0.027866	1	2375	2375		25.574	8.2091	1	1899200			24555	3686	16900	16938	28468	28468					0.025477127493331864
IDRRLQQV	8	Unmodified	_IDRRLQQV_					0	0	0			REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7476196289062	2	514.30399	1026.59343	2.7412	0.0014098	-2.76	-0.0014195	-0.018722	-9.6286E-06	514.3022777641157	19.017	0.29638	19.081	18.942	19.239	0.063307					7	5	2	0	0	0	0.027866	1	317	317		25.45	1.2474	1	21849	+		24556	23134	16901	16939	28469	28469					0.0811936980298924
IDRRLQQV	8	Unmodified	_IDRRLQQV_					0	0	0			REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.30399	1026.59343	1.5029	0.00077296	-1.8789	-0.00096635	-0.37602	-0.00019339	514.3028528877107	18.848	0.34641	18.848	18.674	19.021	0	-0.11041	-0.00041143	NaN	12.207	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34389	+		24557	23134	16901	16939							0.0811936980298924
IDRRLQQV	8	Unmodified	_IDRRLQQV_					0	0	0			REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.30399	1026.59343	-0.055418	-2.8502E-05	-0.17661	-9.083E-05	-0.23203	-0.00011933	514.3036302990578	19.064	0.34573	18.945	18.756	19.101	-0.11872	-0.013123	0.0013396	NaN	12.207	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31911	+		24558	23134	16901	16939							0.0811936980298924
IDRRLQQV	8	Unmodified	_IDRRLQQV_					0	0	0			REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.30399	1026.59343	0.37119	0.00019091	-2.3323	-0.0011995	-1.9611	-0.0010086	514.3021416680994	19.12	0.44555	18.959	18.688	19.134	-0.16079	0.0011137	-0.00087773	NaN	12.207	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30845	+		24559	23134	16901	16939							0.0811936980298924
IDRSTPQDSTE	11	Unmodified	_IDRSTPQDSTE_					0	0	0			REV__chr3:10918453-10923919|319|10.33|0.18|5.84|+|1|TE_info:L1MC4a,L1MC4a_dup1585,L1,LINE,acceptor,+,10923919,10924222|SLC6A11,None|2	REV__chr3:10918453-10923919|319|10.33|0.18|5.84|+|1|TE_info:L1MC4a,L1MC4a_dup1585,L1,LINE,acceptor,+,10923919,10924222|SLC6A11,None|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2284240722656	3	416.861601	1247.56297	1.1283	0.00047034	3.1047	0.0012942	4.233	0.0017646	416.8627660131964	54.726	0.69776	54.52	54.279	54.976	-0.20613					41	18	3	0	0	0	0.024734	1	5872	5872		24.276	0	1	1659100	+		24560	19431	16902	16940	28470	28470					-0.05090498163394841
IDSHQDCDV	9	Unmodified	_IDSHQDCDV_					0	0	0			REV__ENSG00000023318|ENST00000262455|ERP44	REV__ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.271728515625	2	516.208563	1030.40257	-0.2779	-0.00014345	2.5237	0.0013028	2.2458	0.0011593	516.2083459975277	48.95	0.20966	48.95	48.795	49.005	0					6	5	2	0	0	0	0.024418	1	5023	5023		37.812	0	1	75842	+		24561	20009	16903	16941	28471	28471					-0.11141124361279253
IDSLEILFN	9	Unmodified	_IDSLEILFN_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2864990234375	2	532.28714	1062.55973	-0.60727	-0.00032324	0.55774	0.00029688	-0.049533	-2.6366E-05	532.2872840443805	77.141	0.60932	76.979	76.616	77.225	-0.16196					28	14	3	0	0	0	0.64897	1	9166	9166		49.536	0.32525	1	666540			24562	1685	16904	16942	28472	28472					0.03094903520582193
IDSLIKKVT	9	Unmodified	_IDSLIKKVT_					0	0	0			REV__ENSG00000101126|ENST00000621696|ADNP	REV__ENSG00000101126|ENST00000621696|ADNP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.75189208984375	2	508.82115	1015.62775	-1.0565	-0.00053755	1.166	0.00059328	0.10952	5.5727E-05	508.8218195151799	43.515	0.43297	43.515	43.332	43.765	0					22	11	3	0	0	0	0.022657	1	4084	4084		87.696	27.402	1	363600	+		24563	21185	16905	16943	28473	28473					0.120557731712438
IDSLQKANQ	9	Unmodified	_IDSLQKANQ_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.75189208984375	2	508.772188	1015.52982	-0.90822	-0.00046208	1.3535	0.00068864	0.44533	0.00022657	508.7722178929157	43.483	0.83509	43.483	42.895	43.731	0					66	22	4	0	0	0	0.021513	1	4084	4084		93.195	45.28	1	746940			24564	2882	16906	16944	28474	28474					0.022679645752305078
IDSLQKANQ	9	Unmodified	_IDSLQKANQ_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.772188	1015.52982	0.31352	0.00015951	-0.21132	-0.00010751	0.1022	5.1998E-05	508.7721447449942	43.17	0.58077	43.201	42.759	43.34	0.030823	-0.14104	-0.00065351	NaN	93.195	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526280			24565	2882	16906	16944							0.022679645752305078
IDSMTCQLLY	10	Carbamidomethyl (C),Oxidation (M)	_IDSM(Oxidation (M))TC(Carbamidomethyl (C))QLLY_	IDSMTC(1)QLLY	IDSM(1)TCQLLY	IDSMTC(85)QLLY	IDSM(85)TCQLLY	0	1	1			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	630.2869873046875	2	630.285956	1258.55736	0.33187	0.00020918	-0.51914	-0.00032721	-0.18727	-0.00011803	630.2854508207739	74.25	1.1085	74.067	73.827	74.936	-0.18278					56	26	3	0	0	0	0.52982	1	8757	8757		84.916	30.139	1	1994600	+		24566	20686	16907	16945	28475	28475	265	633			-0.06157636271041156
IDSRNLIET	9	Unmodified	_IDSRNLIET_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2669067382812	2	530.785296	1059.55604	-0.076649	-4.0684E-05	-0.39644	-0.00021042	-0.47309	-0.00025111	530.785612527976	53.159	0.68896	52.969	52.631	53.32	-0.18982					27	16	2	0	0	0	0.024477	1	5545	5545		9.7057	0	1	333750	+		24567	28165	16908	16946	28476	28476					0.028642337467317702
IDSVKKSKP	9	Unmodified	_IDSVKKSKP_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2903137207031	2	501.303124	1000.5917	0.41407	0.00020757	0.46385	0.00023253	0.87792	0.0004401	501.3032715448983	83.469	0.5844	83.3	82.99	83.575	-0.16915					21	13	3	0	0	0	0.024367	1	10120	10120		22.58	9.1256	1	63990	+		24568	23950	16909	16947	28477	28477					0.09142315994381534
IDSVKVGKR	9	Unmodified	_IDSVKVGKR_					0	0	0			REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF	REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2902526855469	2	501.308741	1000.60293	0.64439	0.00032304	1.9176	0.00096129	2.5619	0.0012843	501.30943711623206	85.711	0.42389	85.562	85.41	85.834	-0.14967					13	9	2	0	0	0	0.024418	1	10419	10419		45.972	8.8131	1	72870	+		24569	32991	16910	16948	28478	28478					0.10265138088527692
IDSYGLLL	8	Unmodified	_IDSYGLLL_					0	0	0			REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20	REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.2400207519531	2	447.252569	892.490584	0.78316	0.00035027	3.1676	0.0014167	3.9507	0.001767	447.25376831658275	54.585	0.38007	54.379	54.122	54.502	-0.20613					15	9	2	0	0	0	0.027866	1	5759	5759		69.093	14.328	1	188960	+		24570	27418	16911	16949	28479	28479					0.04003864291678383
IDTCGQRDPT	10	Unmodified	_IDTCGQRDPT_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7670288085938	2	553.250763	1104.48697	-0.1401	-7.7512E-05	-4.3481	-0.0024056	-4.4882	-0.0024831	553.2481087524818	61.516	0.24902	61.302	61.167	61.416	-0.21375					8	5	2	0	0	0	0.03519	1	6894	6894		37.812	12.237	1	59402	+		24571	23909	16912	16950	28480	28480					-0.06109173544518853
IDTFFGKLL	9	Unmodified	_IDTFFGKLL_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8450927734375	2	527.302593	1052.59063	-0.30262	-0.00015957	-0.48869	-0.00025769	-0.79132	-0.00041726	527.8060981402161	55.803	0.17787	55.803	55.715	55.892	0					5	4	2	0	0	0	0.024523	1	6178	6178		29.15	0	1	58485	+		24572	28270	16913	16951	28481	28481					0.06644101625465737
IDTGTIYKN	9	Unmodified	_IDTGTIYKN_					0	0	0			REV__TMED5|p.K140N|1|0.12|ENSG00000117500|chr1:93156351-93156351|C/A|missense_variant	REV__TMED5|p.K140N|1|0.12|ENSG00000117500|chr1:93156351-93156351|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7882690429688	2	512.769114	1023.52368	-0.044642	-2.2891E-05	-1.6725	-0.00085758	-1.7171	-0.00088048	512.7681620997556	71.32	0.82925	71.058	70.69	71.52	-0.26199					55	19	4	0	0	0	0.023417	1	8347	8347		79.451	0	1	1945200	+		24573	37703	16914	16952	28482	28482					0.012854463437065533
IDTHADVW	8	Unmodified	_IDTHADVW_					0	0	0			REV__nc|ENSG00000118520|P05089-3|ARG1	REV__nc|ENSG00000118520|P05089-3|ARG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.8033447265625	2	478.727249	955.439946	-0.087459	-4.1869E-05	0.17025	8.1503E-05	0.082791	3.9634E-05	478.7271846094733	51.9	0.93631	51.753	51.511	52.447	-0.14735					48	25	3	0	0	0	0.027866	1	5615	5615		18.324	0	1	376980	+		24574	22414	16915	16953	28483	28483					-0.03955665033333844
IDTHEVMLT	9	Unmodified	_IDTHEVMLT_					0	0	0			REV__ENSG00000163322|ENST00000321945|ABRAXAS1	REV__ENSG00000163322|ENST00000321945|ABRAXAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2825317382812	2	529.762975	1057.5114	-0.40619	-0.00021519	-2.5172	-0.0013335	-2.9234	-0.0015487	529.7615443034839	62.49	0.35062	62.232	62.017	62.368	-0.25824					12	8	2	0	0	0	0.024457	1	6987	6987		29.15	6.1071	1	398750	+		24575	25553	16916	16954	28484	28484					-0.01505913390974456
IDTIRNLS	8	Unmodified	_IDTIRNLS_					0	0	0			REV__nc|ENSG00000105976|P08581-2|MET	REV__nc|ENSG00000105976|P08581-2|MET	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.26361083984375	2	466.263999	930.513445	-1.0918	-0.00050906	-0.32943	-0.0001536	-1.4212	-0.00066266	466.2639071491436	37.918	2.4894	37.699	36.989	39.479	-0.21848					154	67	5	0	0	0	0.47665	1	3042	3042		87.754	5.4493	1	65965000	+		24576	21583	16917	16955	28485	28485					0.04540883409140406
IDTKTSMPID	10	Unmodified	_IDTKTSMPID_					0	0	0			REV__ENSG00000172139|ENST00000305815|SLC9C1	REV__ENSG00000172139|ENST00000305815|SLC9C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.814697265625	2	560.781364	1119.54818	-0.60857	-0.00034127	-1.3704	-0.00076848	-1.9789	-0.0011098	560.7812146560955	81.32	0.37299	81.177	80.984	81.357	-0.14248					15	8	3	0	0	0	0.03519	1	9775	9775		74.255	28.303	1	92013	+		24577	26636	16918	16956	28486	28486					-0.006816615650905078
IDTSIEPN	8	Unmodified	_IDTSIEPN_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.77166748046875	2	444.71909	887.423627	-0.053905	-2.3973E-05	-1.4525	-0.00064596	-1.5064	-0.00066993	444.71994400033196	32.298	0.21885	32.061	31.954	32.173	-0.23666					6	4	2	0	0	0	0.027866	1	2224	2224		55.504	8.7378	1	31356			24578	10133	16919	16957	28487	28487					-0.024587909901015337
IDVEIIDIN	9	Unmodified	_IDVEIIDIN_					0	0	0		nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7	nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2721557617188	2	522.284597	1042.55464	-0.27619	-0.00014425	3.9391	0.0020573	3.6629	0.0019131	522.2870584135346	42.373	0.35755	42.373	42.322	42.679	0					13	9	2	0	0	0	0.024374	1	3921	3921		58.782	5.4305	1	153240			24579	10864	16920	16958	28488	28488					0.035065996579760395
IDVEVKQP	8	Unmodified	_IDVEVKQP_					0	0	0			REV__ENSG00000142166|ENST00000270139|IFNAR1	REV__ENSG00000142166|ENST00000270139|IFNAR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2789306640625	2	464.260925	926.507297	-0.50619	-0.000235	3.1622	0.0014681	2.656	0.0012331	464.26280527583657	51.58	0.32001	51.432	51.157	51.477	-0.14735					11	8	2	0	0	0	0.027866	1	5408	5408		25.45	0	1	194950	+		24580	24136	16921	16959	28489	28489					0.041103651776211336
IDVFALHQLF	10	Unmodified	_IDVFALHQLF_					0	0	0			REV__ENSG00000181273|ENST00000326855|OR5AK2	REV__ENSG00000181273|ENST00000326855|OR5AK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.5570983886719	3	401.557125	1201.64954	1.2158	0.00048822	-0.90032	-0.00036153	0.3155	0.00012669	401.5566326583334	72.614	0.80853	72.349	72.001	72.81	-0.26479					49	18	4	0	0	0	1.0344	1	8523	8523		41.427	2.673	1	812220	+		24581	27394	16922	16960	28490	28490					0.056785779197980446
IDVKKKDSP	9	Unmodified	_IDVKKKDSP_					0	0	0			REV__ENST00000370765.10_1_6:56480423-56480453:-|nuORF	REV__ENST00000370765.10_1_6:56480423-56480453:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7432861328125	2	515.300581	1028.58661	0.61458	0.00031669	-0.42466	-0.00021883	0.18992	9.7864E-05	515.3001232639755	70.005	0.61353	69.712	69.386	70	-0.29292					32	14	3	0	0	0	0.024523	1	8442	8442		10.265	0	1	554450	+		24582	31137	16923	16961	28491	28491					0.07346012131779389
IDVLTWVI	8	Unmodified	_IDVLTWVI_					0	0	0			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7843933105469	2	479.784036	957.553519	0.82665	0.00039661	-0.61017	-0.00029275	0.21648	0.00010386	479.7836052724121	96.636	1.3272	96.642	96.353	97.68	0.0065002					74	29	5	0	0	0	0.81662	1	12324	12324		57.811	7.7867	1	2246700	+		24583	22276	16924	16962	28492	28492					0.07304430079705071
IDVWWLFD	8	Unmodified	_IDVWWLFD_					0	0	0		ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant;nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000074803|Q13621-3|SLC12A1	ENSG00000064651|ENST00000262461|SLC12A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.27587890625	2	547.271293	1092.52803	-0.67609	-0.00037	-2.4496	-0.0013406	-3.1257	-0.0017106	547.2708661296534	78.442	0.2486	78.442	78.282	78.531	0					6	5	2	0	0	0	0.027866	1	9712	9712		25.45	0	1	62827			24584	1278;1538	16925	16963	28493	28493					-0.01453044442700957
IDWAVNEMI	9	Unmodified	_IDWAVNEMI_					0	0	0			REV__ENST00000409968.5_3_2:137928385-137928481:+|nuORF	REV__ENST00000409968.5_3_2:137928385-137928481:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.8131103515625	2	545.765517	1089.51648	-0.49341	-0.00026928	2.5241	0.0013776	2.0307	0.0011083	546.2684165708307	53.857	0.52782	53.857	53.582	54.109	0					19	14	2	0	0	0	0.024205	1	5847	5847		53.351	0	1	151490	+		24585	31975	16926	16964	28494	28494					-0.02469609528361616
IDWISLVGSTS	11	Unmodified	_IDWISLVGSTS_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.3194580078125	2	589.308603	1176.60265	-0.88191	-0.00051972	1.3765	0.00081117	0.49457	0.00029145	589.3094429754358	21.701	0.33806	21.51	21.324	21.662	-0.19072					12	6	2	0	0	0	0.024778	1	684	684		22.58	0	1	32792	+		24586	26836	16927	16965	28495	28495					0.0214167357801216
IDYAAKKLE	9	Unmodified	_IDYAAKKLE_					0	0	0			REV__ENSG00000137312|ENST00000376389|FLOT1	REV__ENSG00000137312|ENST00000376389|FLOT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2943115234375	2	525.795132	1049.57571	-1.5305	-0.00080471	1.2941	0.00068042	-0.23637	-0.00012428	525.7955307296673	52.338	0.67607	52.069	51.795	52.471	-0.26903					22	17	2	0	0	0	0.02435	1	5441	5441		34.173	0	1	702740	+		24587	23747	16928	16966	28496	28496					0.052906097574805244
IDYKQLQLL	9	Unmodified	_IDYKQLQLL_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.279296875	2	567.331882	1132.64921	0.10684	6.0614E-05	-1.0937	-0.00062048	-0.98684	-0.00055987	567.3309566992538	78.869	0.80266	78.714	78.47	79.273	-0.15591					41	18	3	0	0	0	0.024506	1	9456	9456		16.473	0	1	497200	+		24588	26683	16929	16967	28497	28497					0.0881915819995811
IDYLNRSF	8	Unmodified	_IDYLNRSF_					0	0	0			REV__nc|ENSG00000064012|Q14790-9|CASP8	REV__nc|ENSG00000064012|Q14790-9|CASP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.8189086914062	2	514.263999	1026.51345	0.33185	0.00017066	-1.4143	-0.00072735	-1.0825	-0.00055669	514.2633424776869	68.72	0.43884	68.477	68.187	68.626	-0.24278					16	10	2	0	0	0	0.027866	1	7945	7945		40.573	2.7611	1	126450	+		24589	19250	16930	16968	28498	28498					0.0012488340912568674
IEAAKKAH	8	Unmodified	_IEAAKKAH_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7804260253906	2	434.255977	866.497401	-0.10967	-4.7625E-05	1.0165	0.0004414	0.90678	0.00039377	434.25622122117204	41.053	0.68592	40.826	40.473	41.159	-0.2278					43	17	4	0	0	0	0.027866	1	3563	3563		19.36	0	1	292070	+		24590	20605	16931	16969	28499	28499					0.05881221962897598
IEAALQIFY	9	Unmodified	_IEAALQIFY_					0	0	0		ENSG00000011083|ENST00000230671|SLC6A7	ENSG00000011083|ENST00000230671|SLC6A7	ENSG00000011083|ENST00000230671|SLC6A7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.8316650390625	2	534.292225	1066.5699	0.23982	0.00012814	-0.64413	-0.00034415	-0.40431	-0.00021602	534.2911941297914	79.173	0.75271	78.918	78.644	79.396	-0.25471					26	17	2	0	0	0	0.024381	1	9461	9461		37.159	18.835	1	69205			24591	886	16932	16970	28500	28500					0.039275112458199146
IEAEDPDL	8	Unmodified	_IEAEDPDL_					0	0	0		nc|ENSG00000124215|Q8IXH8-1|CDH26;ENSG00000124215|ENST00000348616|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.235107421875	2	451.211098	900.407643	-0.6231	-0.00028115	-0.6655	-0.00030028	-1.2886	-0.00058143	451.20939213089116	28.534	0.24866	28.534	28.406	28.655	0					7	5	2	0	0	0	0.027866	1	1659	1659		55.504	0	1	17989			24592	18237	16933	16971	28501	28501					-0.046544972269884965
IEAEEKKL	8	Unmodified	_IEAEEKKL_					0	0	0			REV__nc|ENSG00000198586|Q9UKI8-4|TLK1;REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF;REV__nc|ENSG00000146872|Q86UE8|TLK2;REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7353210449219	2	480.274032	958.533512	-0.34511	-0.00016575	0.32986	0.00015842	-0.015248	-7.3232E-06	480.27407015813634	60.527	0.68294	60.273	60.053	60.736	-0.25373					24	16	2	0	0	0	0.027866	1	6702	6702		35.618	0	1	180940	+		24593	36760;34550;28436;32029	16934	16972	28502	28502					0.05258634349092972
IEAEEQKI	8	Unmodified	_IEAEEQKI_					0	0	0		nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;CCPG1|p.L321Yfs*8|1|0.09|ENSG00000260916|chr15:55360813-55360813|G/-|frameshift_variant;nc|ENSG00000260916|Q9ULG6-3|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7353210449219	2	480.25584	958.497126	-0.23454	-0.00011264	-3.5641	-0.0017117	-3.7986	-0.0018243	480.2547160392573	60.405	0.15915	60.152	60.053	60.212	-0.25373					5	3	2	0	0	0	0.027866	1	6702	6702		35.618	0	1	51541			24594	10946	16935	16973	28503	28503					0.01621757452392103
IEAELAELGQ	10	Unmodified	_IEAELAELGQ_					0	0	0		nc|ENSG00000124678|Q8WWU5-3|TCP11;nc|ENSG00000124678|Q8WWU5-6|TCP11;nc|ENSG00000124678|Q8WWU5-4|TCP11;ENSG00000124678|ENST00000311875|TCP11;nc|ENSG00000124678|Q8WWU5-5|TCP11;nc|ENSG00000124678|Q8WWU5-7|TCP11;nc|ENSG00000124678|Q8WWU5-2|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.8300170898438	2	536.779679	1071.5448	-0.49715	-0.00026686	2.3081	0.0012389	1.8109	0.00097208	536.7809519101584	49.399	0.64981	49.298	48.841	49.491	-0.1008					40	16	4	0	0	0	0.03519	1	4981	4981		26.693	7.5894	1	336230			24595	4068	16936	16974	28504	28504					0.011894116525809295
IEAGGKPNKL	10	Unmodified	_IEAGGKPNKL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8004760742188	2	513.800749	1025.58694	-0.7554	-0.00038812	0.33043	0.00016978	-0.42496	-0.00021835	513.8008047564907	31.598	0.89655	31.598	31.173	32.07	0					45	21	3	0	0	0	1.0508	1	2131	2131		39.253	3.6345	1	1811600	+		24596	25715	16937	16975	28505	28505					0.07517431851601941
IEAGHNCYLLL	11	Unmodified	_IEAGHNCYLLL_					0	0	0			REV__ENST00000589827.5_1_17:75138810-75139725:+|nuORF	REV__ENST00000589827.5_1_17:75138810-75139725:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.5580139160156	3	415.881391	1244.62234	0.1482	6.1632E-05	4.1142	0.001711	4.2624	0.0017727	415.8825006558292	24.46	0.22193	24.46	24.341	24.563	0					5	4	2	0	0	0	0.024736	1	1077	1077		38.754	1.2454	1	11755	+		24597	35684	16938	16976	28506	28506					0.009817263171044033
IEAGMRLLY	9	Unmodified	_IEAGMRLLY_					0	0	0			REV__ENSG00000139645|ENST00000267116|ANKRD52	REV__ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2930908203125	2	533.291702	1064.56885	1.644	0.00087672	1.4206	0.00075761	3.0646	0.0016343	533.2923175963467	24.723	0.61291	24.542	24.285	24.898	-0.18089					36	13	4	0	0	0	0.83071	1	1092	1092		37.159	5.2042	1	903620	+		24598	23956	16939	16977	28507	28507					0.03914973605265004
IEAGVLPL	8	Unmodified	_IEAGVLPL_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.24822998046875	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0239	1	11185	11185		33.516	6.7195	1	123310000			24599	590	16940	16978	28508	28508					0.07228185499855044
IEAHRILL	8	Unmodified	_IEAHRILL_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;ENST00000494929.5_1_22:20819888-20843498:-|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF;ENST00000490556.1_1_22:20843270-20846187:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7769470214844	2	482.800552	963.58655	-0.57529	-0.00027775	0.072401	3.4955E-05	-0.50289	-0.00024279	482.8004017426203	44.751	0.79863	44.751	44.382	45.181	0					42	22	3	0	0	0	0.027866	1	4301	4301		19.36	0	1	593880			24600	2096	16941	16979	28509	28509					0.10330056922430231
IEAIYVML	8	Unmodified	_IEAIYVML_					0	0	0			REV__ENSG00000146918|ENST00000356309|NCAPG2	REV__ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.78253173828125	2	476.264622	950.514691	-0.22259	-0.00010601	-1.6792	-0.00079976	-1.9018	-0.00090578	476.26376446369085	40.699	0.72308	40.722	40.424	41.147	0.023006					32	20	2	0	0	0	0.027866	1	3590	3590		35.201	13.498	1	918600	+		24601	24521	16942	16980	28510	28510					0.03745381453700247
IEAKIHTLL	9	Unmodified	_IEAKIHTLL_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.801025390625	2	519.321317	1036.62808	-0.56457	-0.00029319	-0.73981	-0.0003842	-1.3044	-0.00067739	519.3207475167811	52.114	1.1427	52.114	51.906	53.049	0					49	29	2	0	0	0	0.024405	1	5564	5564		35.618	0	1	1199200			24602	3982	16943	16981	28511	28511					0.11123192891091094
IEAMGFTG	8	Unmodified	_IEAMGFTG_					0	0	0		ENST00000491040.5_1_20:33934876-33981976:-|nuORF;nc|ENSG00000101019|Q9NVA1-4|UQCC1;nc|ENSG00000101019|Q9NVA1-2|UQCC1;ENSG00000101019|ENST00000374385|UQCC1	ENST00000491040.5_1_20:33934876-33981976:-|nuORF	ENST00000491040.5_1_20:33934876-33981976:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.23797607421875	2	413.194196	824.37384	-0.057092	-2.359E-05	-1.7812	-0.00073598	-1.8383	-0.00075957	413.19364411699115	76.696	1.0796	76.528	76.054	77.133	-0.16853					52	25	3	0	0	0	0.027866	1	9047	9047		42.474	5.446	1	350130			24603	2277	16944	16982	28512	28512					-0.04537197199726961
IEAMRKEM	8	Unmodified	_IEAMRKEM_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.2552795410156	2	504.254262	1006.49397	-0.36292	-0.00018301	3.6565	0.0018438	3.2935	0.0016608	504.2559093990542	40.932	0.87997	40.797	40.454	41.334	-0.13553					60	22	4	0	0	0	0.68164	1	3584	3584		68.787	5.4806	1	1533800	+		24604	21740	16945	16983	28513	28513					-0.009015321976221458
IEAMRKEM	8	Unmodified	_IEAMRKEM_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.254262	1006.49397	0.56192	0.00028335	5.5877	0.0028176	6.1496	0.003101	504.25702410368433	40.9	0.39565	40.777	40.547	40.943	-0.12317	-0.096407	0.0018161	NaN	68.787	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144220	+		24605	21740	16945	16983							-0.009015321976221458
IEAMRKEM	8	Unmodified	_IEAMRKEM_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.254262	1006.49397	-0.29397	-0.00014823	6.7339	0.0033956	6.4399	0.0032473	504.25772715563846	40.907	0.5126	40.93	40.527	41.04	0.023003	0.056831	0.002972	NaN	68.787	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120420	+		24606	21740	16945	16983							-0.009015321976221458
IEAMRKEM	8	Unmodified	_IEAMRKEM_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	504.254262	1006.49397	-0.36292	-0.00018301	3.6565	0.0018438	3.2935	0.0016608	504.2559093990542	40.932	0.87997	40.797	40.454	41.334	-0.13553	-0.07629	-0.00013161	NaN	68.787	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1533800	+		24607	21740	16945	16983							-0.009015321976221458
IEAMRKEM	8	Unmodified	_IEAMRKEM_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	504.254262	1006.49397	-0.33789	-0.00017038	3.3681	0.0016984	3.0303	0.001528	504.25584109152436	41.136	0.77864	40.908	40.616	41.395	-0.2278	0.034695	-0.00042238	NaN	68.787	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1408700	+		24608	21740	16945	16983							-0.009015321976221458
IEAVKLLPQ	9	Unmodified	_IEAVKLLPQ_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.8161926269531	2	505.815867	1009.61718	0.15025	7.5997E-05	-0.80276	-0.00040605	-0.65251	-0.00033005	505.8154476015568	68.303	1.3905	68.048	67.7	69.091	-0.25516					98	33	5	0	0	0	0.072054	1	7918	7918		120.62	0	1	13819000	+		24609	23585	16946	16984	28514	28514					0.11275790516799589
IECFMNDL	8	Unmodified	_IECFMNDL_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7816467285156	2	492.711896	983.409239	-0.5235	-0.00025794	-1.3281	-0.00065438	-1.8516	-0.00091232	492.7116339112882	78.059	0.16673	78.075	77.948	78.114	0.015907					5	3	2	0	0	0	0.027866	1	9568	9568		44.117	0	1	63188			24610	7203	16947	16985	28515	28515					-0.08312902734235195
IECPKFCW	8	Unmodified	_IECPKFCW_					0	0	0			REV__nc|ENSG00000119125|Q9Y2T3-3|GDA	REV__nc|ENSG00000119125|Q9Y2T3-3|GDA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8165283203125	2	513.232799	1024.45104	-0.65239	-0.00033483	-3.7435	-0.0019213	-4.3959	-0.0022561	513.2307360901842	60.747	0.91011	60.534	60.04	60.95	-0.21339					44	23	3	0	0	0	0.027866	1	6904	6904		35.201	3.2459	1	171260	+		24611	22440	16948	16986	28516	28516					-0.06020302255058141
IEDAPITVQS	10	Unmodified	_IEDAPITVQS_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.8289794921875	2	536.779679	1071.5448	-0.5099	-0.00027371	2.1848	0.0011727	1.6749	0.00089903	536.780721379774	49.556	0.64846	49.375	48.847	49.495	-0.18071					36	16	3	0	0	0	0.03519	1	4991	4991		26.693	8.4308	1	239050			24612	9199	16949	16987	28517	28517					0.011894116525581921
IEDAPLVEV	9	Unmodified	_IEDAPLVEV_					0	0	0			REV__ENSG00000120896|ENST00000240123|SORBS3	REV__ENSG00000120896|ENST00000240123|SORBS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7663879394531	2	492.76604	983.517527	0.15833	7.8017E-05	1.2262	0.00060421	1.3845	0.00068223	492.7666794738476	77.772	2.7036	77.772	77.04	79.744	0					162	64	4	0	0	0	0.6504	1	9586	9586		49.442	0	1	4530600	+		24613	22565	16950	16988	28518	28518					0.025109281121899585
IEDEIPKEE	9	Unmodified	_IEDEIPKEE_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8175659179688	2	551.269144	1100.52373	-1.1257	-0.00062058	1.922	0.0010596	0.7963	0.00043898	551.2694309959542	39.172	0.21419	39.073	38.949	39.163	-0.098755					6	5	2	0	0	0	0.024457	1	3343	3343		29.15	2.4566	1	44515	+		24614	20186	16951	16989	28519	28519					-0.022505984469717077
IEDEIPKEE	9	Unmodified	_IEDEIPKEE_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.8179321289062	2	551.269144	1100.52373	-1.2566	-0.00069273	-4.055	-0.0022354	-5.3116	-0.0029281	551.2662857816844	39.199	0.80235	39.222	38.688	39.49	0.023727					25	21	2	0	0	0	0.024427	1	3322	3322		34.173	0	1	148310	+		24615	20186	16951	16989	28520	28520					-0.022505984469717077
IEDGLPPW	8	Unmodified	_IEDGLPPW_					0	0	0		ENST00000468758.1_1_2:134877558-135010718:+|nuORF	ENST00000468758.1_1_2:134877558-135010718:+|nuORF	ENST00000468758.1_1_2:134877558-135010718:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.750732421875	2	463.734543	925.454533	0.20436	9.4771E-05	-2.7619	-0.0012808	-2.5575	-0.001186	463.7331594427002	42.341	0.34053	42.341	42.12	42.461	0					15	9	2	0	0	0	0.027866	1	3902	3902		28.254	8.8943	1	137630			24616	14884	16952	16990	28521	28521					-0.011175928851912431
IEDGRLVIH	9	Unmodified	_IEDGRLVIH_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM;L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.298095703125	2	526.298373	1050.58219	-0.4711	-0.00024794	0.083662	4.4031E-05	-0.38744	-0.00020391	526.2984180381217	55.054	1.2054	55.054	54.757	55.963	0					76	33	4	0	0	0	0.16468	1	6063	6063		96.19	11.275	1	8227000			24617	18651	16953	16991	28522	28522					0.05892547708845086
IEDILNRIQ	9	Unmodified	_IEDILNRIQ_					0	0	0		ENSG00000184575|ENST00000332707|XPOT;ENST00000443317.1_1_20:32801869-32802238:-|nuORF	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3106079101562	2	557.316763	1112.61897	-0.70682	-0.00039392	-2.4912	-0.0013884	-3.198	-0.0017823	557.8163603315672	66.943	0.20953	66.661	66.588	66.798	-0.28149					7	4	2	0	0	0	0.024427	1	7953	7953		42.396	5.9494	1	216800			24618	9353	16954	16992	28523	28523					0.06716799534751772
IEDKIGAH	8	Unmodified	_IEDKIGAH_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.787841796875	2	441.737617	881.460681	0.25851	0.00011419	1.2557	0.00055467	1.5142	0.00066886	441.73670909479705	40.578	0.20837	40.578	40.414	40.623	0					10	5	3	0	0	0	0.027866	1	3589	3589		25.45	0	1	62453	+		24619	20419	16955	16993	28524	28524					0.015209253463240202
IEDVLDRPI	9	Unmodified	_IEDVLDRPI_					0	0	0			REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.832275390625	2	535.298039	1068.58152	-0.16621	-8.8971E-05	4.0873	0.0021879	3.9211	0.0020989	535.300114961003	78.729	0.60244	78.498	78.218	78.82	-0.23141					22	13	2	0	0	0	0.024484	1	9367	9367		30.318	0	1	214060	+		24620	25107	16956	16994	28525	28525					0.04997708269138457
IEEDILCTNP	10	Unmodified	_IEEDILCTNP_					0	0	0		ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000522397.5_1_8:54883012-54934915:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7515869140625	2	573.770997	1145.52744	-0.83002	-0.00047624	0.52097	0.00029892	-0.30905	-0.00017732	573.7701136497071	30.386	0.20321	30.208	30.04	30.243	-0.17818					7	4	2	0	0	0	0.03519	1	1929	1929		37.812	2.1932	1	71588			24621	16027	16957	16995	28526	28526					-0.039502519447296436
IEEDPDANN	9	Unmodified	_IEEDPDANN_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.80023193359375	2	508.711993	1015.40943	0.384	0.00019535	0.62295	0.0003169	1.0069	0.00051225	508.71200541299345	58.563	0.4831	58.654	58.371	58.855	0.091217					19	12	2	0	0	0	0.024523	1	6568	6568		21.96	11.094	1	171970			24622	7940	16958	16996	28527	28527					-0.09765488209040996
IEEDQVQVQ	9	Unmodified	_IEEDQVQVQ_					0	0	0			REV__ENSG00000079950|ENST00000367941|STX7	REV__ENSG00000079950|ENST00000367941|STX7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.8220825195312	2	544.266936	1086.51932	-0.55934	-0.00030443	-2.1271	-0.0011577	-2.6864	-0.0014621	544.266029596134	63.746	0.53716	63.494	63.228	63.765	-0.25141					29	14	3	0	0	0	0.024323	1	7433	7433		35.618	0	1	299940	+		24623	20646	16959	16997	28528	28528					-0.020480628698578585
IEEDRRKFFQE	11	Unmodified	_IEEDRRKFFQE_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.9022521972656	3	499.587924	1495.74194	-0.7387	-0.00036904	-0.67675	-0.0003381	-1.4155	-0.00070714	499.5878083073913	43.677	0.32484	43.677	43.475	43.8	0					9	8	2	0	0	0	0.024767	1	4111	4111		25.068	0	1	104400			24624	3767	16960	16998	28529	28529					0.013900111953716987
IEEEAAKYR	9	Unmodified	_IEEEAAKYR_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8300170898438	2	554.785296	1107.55604	-0.12929	-7.1728E-05	3.6973	0.0020512	3.568	0.0019795	554.7870028622335	87.303	0.33578	87.166	86.995	87.331	-0.13734					11	7	2	0	0	0	0.024477	1	10621	10621		20.947	0	1	49283		+	24625	540	16961	16999	28530	28530					0.006562337466903045
IEEELDLIQ	9	Unmodified	_IEEELDLIQ_					0	0	0			REV__ENSG00000154479|ENST00000447353|CFAP210	REV__ENSG00000154479|ENST00000447353|CFAP210	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.2891235351562	2	551.287337	1100.56012	-0.54156	-0.00029855	2.7464	0.0015141	2.2049	0.0012155	551.2895515559901	47.964	1.0275	47.866	47.557	48.584	-0.097553					68	27	4	0	0	0	0.20967	1	4747	4747		87.754	5.5138	1	2585200	+		24626	24962	16962	17000	28531	28531					0.013862784497860048
IEEFFQTRE	9	Unmodified	_IEEFFQTRE_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.87554931640625	3	400.196144	1197.5666	0.16609	6.6468E-05	0.20428	8.1751E-05	0.37037	0.00014822	400.19613669527325	37.648	0.4633	37.428	37.152	37.615	-0.2195					22	11	3	0	0	0	0.024447	1	3011	3011		20.03	2.1973	1	121420	+		24627	19428	16963	17001	28532	28532					-0.024277835988414154
IEEKDELD	8	Unmodified	_IEEKDELD_					0	0	0		ENSG00000170667|ENST00000465829|RASA4B;ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000105808|ENST00000262940|RASA4;ENST00000488284.6_1_7:102129041-102135092:-|nuORF;ENST00000495352.5_1_7:102124102-102135092:-|nuORF;ENST00000522223.1_7:102223281-102234330:-|nuORF	ENSG00000170667|ENST00000465829|RASA4B	ENSG00000170667|ENST00000465829|RASA4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7657775878906	2	495.734937	989.455321	-0.69228	-0.00034319	-1.2738	-0.00063147	-1.9661	-0.00097466	495.73459672867943	40.867	0.11606	40.732	40.635	40.752	-0.13553					4	2	2	0	0	0	0.027866	1	3560	3560		23.042	0	1	43842			24628	8066	16964	17002	28533	28533					-0.039828430268016746
IEEKLKESD	9	Unmodified	_IEEKLKESD_					0	0	0			REV__CON__Q32PJ2	REV__CON__Q32PJ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3165283203125	2	545.784961	1089.55537	-0.24346	-0.00013288	-2.6475	-0.001445	-2.891	-0.0015778	546.2858113836804	89.678	0.51924	89.541	89.273	89.793	-0.13762					14	11	2	0	0	0	0.024466	1	10968	10968		39.253	0	1	121010	+	+	24629	19582	16965	17003	28534	28534					0.0141739430700909
IEEKTIDR	8	Unmodified	_IEEKTIDR_					0	0	0			REV__ENSG00000110675|ENST00000265840|ELMOD1	REV__ENSG00000110675|ENST00000265840|ELMOD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2659912109375	2	502.274564	1002.53457	0.12131	6.0933E-05	-0.93881	-0.00047154	-0.8175	-0.00041061	502.27350492427405	81.687	0.38245	81.493	81.336	81.718	-0.19334					12	8	2	0	0	0	0.027866	1	9856	9856		27.882	0	1	103600	+		24630	21866	16966	17004	28535	28535					0.03340848718005418
IEELEDLY	8	Unmodified	_IEELEDLY_					0	0	0		ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	ENSG00000197226|ENST00000355235|TBC1D9B	ENSG00000197226|ENST00000355235|TBC1D9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2943115234375	2	512.24768	1022.48081	-0.22883	-0.00011722	-2.2209	-0.0011376	-2.4497	-0.0012548	512.2465836714438	66.181	1.2816	65.939	65.167	66.448	-0.24145					49	31	2	0	0	0	0.027866	1	7504	7504		50.025	7.5501	1	1755700			24631	9972	16967	17005	28536	28536					-0.029533685043702462
IEELFASV	8	Unmodified	_IEELFASV_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.2821044921875	2	454.242201	906.469849	0.091585	4.1602E-05	1.5105	0.00068615	1.6021	0.00072775	454.2426696991948	49.471	0.48865	49.32	49.182	49.671	-0.1512					19	12	2	0	0	0	0.027866	1	5089	5089		31.955	11.958	1	91352	+	+	24632	19587	16968	17006	28537	28537					0.012872739119984544
IEELKLGR	8	Unmodified	_IEELKLGR_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2902526855469	2	479.290017	956.565481	-0.51756	-0.00024806	0.47915	0.00022965	-0.03841	-1.841E-05	479.29007800578364	31.097	0.70275	30.912	30.618	31.321	-0.18503					48	17	5	0	0	0	0.39824	1	2033	2033		97.473	3.4663	1	3820800	+		24633	22942	16969	17007	28538	28538					0.0854604682289164
IEELKLGR	8	Unmodified	_IEELKLGR_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.290283203125	2	479.290017	956.565481	-0.065014	-3.1161E-05	-0.024231	-1.1614E-05	-0.089245	-4.2774E-05	479.2897517332639	31.136	0.77501	30.983	30.681	31.456	-0.15231					48	19	4	0	0	0	0.42327	1	2020	2020		94.006	0	1	3739900	+		24634	22942	16969	17007	28539	28539					0.0854604682289164
IEELLELL	8	Unmodified	_IEELLELL_					0	0	0		ENST00000471909.1_1_21:45217249-45223652:+|nuORF;ENST00000467112.5_1_21:45213150-45223652:+|nuORF;ENSG00000160214|ENST00000497547|RRP1	ENST00000471909.1_1_21:45217249-45223652:+|nuORF	ENST00000471909.1_1_21:45217249-45223652:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.30950927734375	2	486.286608	970.558664	-0.89427	-0.00043487	4.3364	0.0021087	3.4421	0.0016739	486.28891355178655	44.303	1.305	44.058	43.412	44.717	-0.2444					54	34	3	0	0	0	0.027866	1	4188	4188		52.299	18.127	1	442420			24635	14976	16970	17008	28540	28540					0.07220689151665738
IEELLTEPT	9	Unmodified	_IEELLTEPT_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7876586914062	2	522.776605	1043.53866	-0.53278	-0.00027853	4.0491	0.0021168	3.5163	0.0018382	522.7781851951914	69.634	0.45085	69.634	69.423	69.874	0					21	10	3	0	0	0	0.024477	1	8370	8370		35.618	3.6634	1	58610	+		24636	22809	16971	17009	28541	28541					0.01862893421048284
IEELNRYRDTL	11	Unmodified	_IEELNRYRDTL_					0	0	0		ENSG00000152208|ENST00000282020|GRID2;GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant;GRID2|p.N607Kfs*56|1|0.12|ENSG00000152208|chr4:93455934-93455935|-/A|frameshift_variant;nc|ENSG00000152208|O43424-2|GRID2;ENST00000505687.5_1_4:93225807-94138074:+|nuORF;ENST00000515744.5_1_4:93744106-94033158:+|nuORF	ENSG00000152208|ENST00000282020|GRID2	ENSG00000152208|ENST00000282020|GRID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2593688964844	3	474.584291	1420.73104	-1.082	-0.00051351	4.4556	0.0021146	3.3736	0.0016011	474.9207033819414	44.225	0.17532	44.006	43.864	44.04	-0.21938					5	4	2	0	0	0	0.024821	1	4087	4087		14.086	0.57807	1	79432			24637	6253	16972	17010	28542	28542					0.03750608821087553
IEELRELRHL	10	Unmodified	_IEELRELRHL_					0	0	0		tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.2738952636719	3	436.585854	1306.73573	-0.11072	-4.834E-05	3.1279	0.0013656	3.0172	0.0013173	436.5871841911738	42.363	0.38072	42.24	42.037	42.417	-0.12299					16	9	2	0	0	0	0.03519	1	3829	3829		15.333	0	1	84588			24638	38103	16973	17011	28543	28543					0.09463537754504614
IEELVVALTC	10	Unmodified	_IEELVVALTC_					0	0	0		ENSG00000237110|ENST00000434551|TAAR9	ENSG00000237110|ENST00000434551|TAAR9	ENSG00000237110|ENST00000434551|TAAR9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3165893554688	2	545.29665	1088.57875	-0.55286	-0.00030147	0.86199	0.00047004	0.30913	0.00016857	545.2968456824592	89.249	0.33694	89.249	89.186	89.523	0					9	7	2	0	0	0	0.03519	1	11270	11270		34.173	0	1	62085			24639	10743	16974	17012	28544	28544					0.03800116819957111
IEENLVAEN	9	Unmodified	_IEENLVAEN_					0	0	0			REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2876586914062	2	515.756204	1029.49785	1.7379	0.00089631	1.513	0.00078035	3.2509	0.0016767	516.2586290630237	24.853	0.35009	24.682	24.471	24.821	-0.17151					12	7	2	0	0	0	0.023239	1	1067	1067		84.916	31.564	1	73671	+		24640	25782	16975	17013	28545	28545					-0.01571447898572842
IEEPIVTI	8	Unmodified	_IEEPIVTI_					0	0	0			REV__ENSG00000166033|ENST00000368984|HTRA1	REV__ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.26458740234375	2	457.265676	912.516799	-0.20469	-9.3597E-05	-2.6807	-0.0012258	-2.8854	-0.0013194	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.93274	1	10153	10153		47.916	0	1	2903100	+		24641	25961	16976	17014	28546	28546					0.057041334631549034
IEEPIVTI	8	Unmodified	_IEEPIVTI_					0	0	0			REV__ENSG00000166033|ENST00000368984|HTRA1	REV__ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2640686035156	2	457.265676	912.516799	-0.37978	-0.00017366	-2.4937	-0.0011403	-2.8735	-0.0013139	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.91239	1	10092	10092		50.025	0	1	2920900	+		24642	25961	16976	17014	28547	28547					0.057041334631549034
IEEPSPIVYSL	11	Unmodified	_IEEPSPIVYSL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.87896728515625	3	416.2237	1245.64927	-0.54665	-0.00022753	-0.33116	-0.00013784	-0.87781	-0.00036537	416.22336842684865	30.76	0.62668	30.516	30.245	30.872	-0.24415					24	14	2	0	0	0	0.024735	1	1993	1993		16.53	0	1	167710			24643	6329	16977	17015	28548	28548					0.036271134092885404
IEEQCHTCVF	10	Unmodified	_IEEQCHTCVF_					0	0	0			REV__ENSG00000089159|ENST00000637617|PXN	REV__ENSG00000089159|ENST00000637617|PXN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.2451477050781	3	403.507336	1207.50018	0.85404	0.00034461	-3.5547	-0.0014343	-2.7006	-0.0010897	403.5057832591193	32.073	0.47585	32.073	31.71	32.186	0					14	11	2	0	0	0	0.03519	1	2205	2205		16.717	14.689	1	41999	+		24644	20844	16978	17016	28549	28549					-0.09527058756771112
IEEQCHTCVF	10	Unmodified	_IEEQCHTCVF_					0	0	0			REV__ENSG00000089159|ENST00000637617|PXN	REV__ENSG00000089159|ENST00000637617|PXN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	403.507336	1207.50018	0.20964	8.4593E-05	-2.7214	-0.0010981	-2.5117	-0.0010135	403.5060967596311	31.901	0.35981	31.913	31.663	32.023	0.011797	-0.061021	0.00040987	NaN	7.3997	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46521	+		24645	20844	16978	17016							-0.09527058756771112
IEEQCHTCVF	10	Unmodified	_IEEQCHTCVF_					0	0	0			REV__ENSG00000089159|ENST00000637617|PXN	REV__ENSG00000089159|ENST00000637617|PXN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	403.507336	1207.50018	1.0985	0.00044326	-3.1136	-0.0012564	-2.0151	-0.00081311	403.5068075719625	32.129	0.30206	31.936	31.771	32.073	-0.19261	-0.038002	-6.4945E-05	NaN	7.3997	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19068	+		24646	20844	16978	17016							-0.09527058756771112
IEERLSRLE	9	Unmodified	_IEERLSRLE_					0	0	0			REV__ENSG00000128596|ENST00000297788|CCDC136	REV__ENSG00000128596|ENST00000297788|CCDC136	MSMS	OPSCC_40_ClassI_Rep-1	4	572.8189697265625	2	572.81967	1143.62479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.296	1	77.034	76.534	77.534	-0.26202								0	0	0	0.51283	1	9186	9186		51.193	8.3284	1		+		24647	22999	16979	17017	28550	28550					0.058718980464163906
IEETEKET	8	Unmodified	_IEETEKET_					0	0	0			REV__ENSG00000117899|ENST00000261758|MESD	REV__ENSG00000117899|ENST00000261758|MESD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.3185729980469	2	489.734937	977.455321	0.091543	4.4832E-05	1.5845	0.00077598	1.676	0.00082082	489.7353830757561	29.596	0.53766	29.447	29.171	29.709	-0.14952					27	12	3	0	0	0	0.027866	1	1803	1803		27.882	0	1	313850	+		24648	22379	16980	17018	28551	28551					-0.03430843026808361
IEEVRFHFLFI	11	Unmodified	_IEEVRFHFLFI_					0	0	0			REV__chr4:6372700-6372903|157|22.61|0.4|5.82|-|1|TE_info:MIR,MIR_dup41374,MIR,SINE,donor,+,6372903,6372981|PPP2R2C,None|1	REV__chr4:6372700-6372903|157|22.61|0.4|5.82|-|1|TE_info:MIR,MIR_dup41374,MIR,SINE,donor,+,6372903,6372981|PPP2R2C,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.7876281738281	3	483.934484	1448.78162	0.079072	3.8266E-05	4.0783	0.0019736	4.1574	0.0020119	483.9366666142454	42.919	0.60777	42.807	42.538	43.145	-0.11253					32	15	4	0	0	0	0.024792	1	3890	3890		18.531	1.3643	1	417660	+		24649	19438	16981	17019	28552	28552					0.07518182936746598
IEFDTFIQKTK	11	Unmodified	_IEFDTFIQKTK_					0	0	0		PSMB4-SEC22B|1|fusion;ENSG00000265808|ENST00000578049|SEC22B	PSMB4-SEC22B|1|fusion	PSMB4-SEC22B|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7508850097656	3	457.250249	1368.72892	0.24359	0.00011138	0.038965	1.7817E-05	0.28256	0.0001292	457.2496065081041	41.809	0.68544	41.832	41.464	42.149	0.023006					41	19	3	0	0	0	0.024797	1	3745	3745		7.3413	0	1	433520			24650	10969	16982	17020	28553	28553					0.05930180083259984
IEFGKGFEY	9	Unmodified	_IEFGKGFEY_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6;COL6A6|p.R1810Sfs*88|1|0.35|ENSG00000206384|chr3:130649258-130649258|G/-|frameshift_variant;nc|ENSG00000206384|A6NMZ7-2|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8002319335938	2	545.266207	1088.51786	-0.24589	-0.00013407	-3.584	-0.0019542	-3.8298	-0.0020883	545.2643979927549	50.552	0.62954	50.371	50.055	50.685	-0.18071					27	16	2	0	0	0	0.024209	1	5161	5161		76.774	27.333	1	2086300			24651	10468	16983	17021	28554	28554					-0.022856521679386788
IEFKEKLLSA	10	Unmodified	_IEFKEKLLSA_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3438720703125	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0616	1	11710	11710		37.812	3.639	1	17343000			24652	2053	16984	17022	28555	28555					0.09415427371459373
IEGAFRLP	8	Unmodified	_IEGAFRLP_					0	0	0			REV__nc|ENSG00000171603|O94985-2|CLSTN1	REV__nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76654052734375	2	451.758352	901.502152	-0.62223	-0.0002811	3.4449	0.0015563	2.8227	0.0012752	451.75940605787633	44.453	1.1202	44.348	43.817	44.937	-0.10468					43	29	2	0	0	0	0.027866	1	4232	4232		35.201	9.7505	1	162140	+		24653	36932	16985	17023	28556	28556					0.047461061056765175
IEGAFRLP	8	Unmodified	_IEGAFRLP_					0	0	0			REV__nc|ENSG00000171603|O94985-2|CLSTN1	REV__nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.758352	901.502152	-0.84824	-0.0003832	3.8134	0.0017227	2.9651	0.0013395	451.7598670169564	44.555	0.88873	44.31	43.867	44.756	-0.2444	0.03415	-0.00014051	NaN	26.796	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190020	+		24654	36932	16985	17023							0.047461061056765175
IEGDLEGLR	9	Unmodified	_IEGDLEGLR_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2908630371094	2	501.266739	1000.51892	-0.37162	-0.00018628	-2.8787	-0.001443	-3.2504	-0.0016293	501.7668060534337	85.55	0.2077	85.492	85.355	85.563	-0.05761					5	4	2	0	0	0	0.024427	1	10689	10689		19.997	0	1	53469	+		24655	19877	16986	17024	28557	28557					0.018685622009684266
IEGIHLYLIV	10	Unmodified	_IEGIHLYLIV_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	585.3121337890625	2	585.350074	1168.6856	0.17558	0.00010277	3.0678	0.0017957	3.2434	0.0018985	585.854233747829	49.872	0.1046	49.95	49.88	49.985	0.077518					4	2	2	0	0	0	0.03519	1	5110	5110		14.865	0.72775	1	93171			24656	6963	16987	17025	28558	28558					0.10800035096644933
IEGIPTFNDV	10	Unmodified	_IEGIPTFNDV_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.2537841796875	2	552.782222	1103.54989	-0.069488	-3.8412E-05	-1.014	-0.00056055	-1.0835	-0.00059896	552.7816273957989	46.192	0.69968	46.192	45.852	46.551	0					31	19	3	0	0	0	0.03519	1	4559	4559		44.377	29.512	1	272110	+		24657	22309	16988	17026	28559	28559					0.0022571551517103217
IEGLFNAGSV	10	Unmodified	_IEGLFNAGSV_					0	0	0			REV__ENSG00000277893|ENST00000622030|SRD5A2	REV__ENSG00000277893|ENST00000622030|SRD5A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7619323730469	2	503.763832	1005.51311	-0.020892	-1.0524E-05	-2.9249	-0.0014735	-2.9458	-0.001484	503.76225673956753	47.842	0.8778	47.655	47.279	48.157	-0.18684					40	23	2	0	0	0	0.61732	1	4710	4710		75.043	9.2401	1	1654300	+		24658	29209	16989	17027	28560	28560					0.010574636892897615
IEGLFNAGSV	10	Unmodified	_IEGLFNAGSV_					0	0	0			REV__ENSG00000277893|ENST00000622030|SRD5A2	REV__ENSG00000277893|ENST00000622030|SRD5A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.763832	1005.51311	-0.24069	-0.00012125	-1.0504	-0.00052916	-1.2911	-0.00065041	503.76303252144766	47.702	0.97656	47.604	47.349	48.326	-0.097549	-0.043963	0.00044211	NaN	75.043	44	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1560700	+		24659	29209	16989	17027							0.010574636892897615
IEGLFNAGSV	10	Unmodified	_IEGLFNAGSV_					0	0	0			REV__ENSG00000277893|ENST00000622030|SRD5A2	REV__ENSG00000277893|ENST00000622030|SRD5A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.763832	1005.51311	-0.57506	-0.00028969	-0.83816	-0.00042224	-1.4132	-0.00071193	503.762781039892	47.961	0.73009	47.685	47.421	48.151	-0.27598	0.037216	0.00065596	NaN	75.043	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1506500	+		24660	29209	16989	17027							0.010574636892897615
IEGMIKLAL	9	Unmodified	_IEGMIKLAL_					0	0	0		nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B;ENST00000563121.1_1_12:52377838-52385653:+|nuORF	nc|ENSG00000135503|P36896-5|ACVR1B	nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3004455566406	2	494.298996	986.583439	0.89614	0.00044296	2.2975	0.0011357	3.1936	0.0015786	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	0.92825	1	12290	12290		30.504	1.3541	1	45891000			24661	4903	16990	17028	28561	28561					0.0896104575336949
IEGPLITL	8	Unmodified	_IEGPLITL_					0	0	0			REV__ENSG00000154957|ENST00000580306|ZNF18;REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000154957|ENST00000580306|ZNF18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2621765136719	2	428.262936	854.51132	-0.84173	-0.00036048	-1.8293	-0.00078343	-2.671	-0.0011439	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0574	1	11384	11384		26.796	0	1	86056000	+		24662	24984;26758	16991	17029	28562	28562					0.0782445467133357
IEGQRIVV	8	Unmodified	_IEGQRIVV_					0	0	0			REV__ENST00000402268.1_1_2:43010452-43019676:-|nuORF	REV__ENST00000402268.1_1_2:43010452-43019676:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7508850097656	2	457.276909	912.539266	0.18578	8.4951E-05	-0.64971	-0.0002971	-0.46394	-0.00021215	457.27642562049283	42.064	0.46518	42.09	41.893	42.358	0.026016					26	13	2	0	0	0	0.027866	1	3745	3745		24.203	3.7209	1	370900	+		24663	25503	16992	17030	28563	28563					0.07949777651424483
IEGSMTVCTTK	11	Unmodified	_IEGSMTVCTTK_					0	0	0		nc|ENSG00000111615|Q13601-2|KRR1;ENSG00000111615|ENST00000229214|KRR1;ENST00000550898.1_1_12:75900510-75905383:-|nuORF;ENST00000550023.5_1_12:75900251-75905383:-|nuORF	nc|ENSG00000111615|Q13601-2|KRR1	nc|ENSG00000111615|Q13601-2|KRR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	585.31201171875	2	585.280674	1168.5468	-1.4054	-0.00082254	-3.9987	-0.0023404	-5.4041	-0.0031629	585.275697431777	49.822	0.1822	49.822	49.731	49.913	0					5	4	2	0	0	0	0.02475	1	5175	5175		21.686	0	1	43346			24664	3126	16993	17031	28564	28564					-0.030736189254866986
IEGVANVVPL	10	Unmodified	_IEGVANVVPL_					0	0	0			REV__nc|ENSG00000011021|P51797-6|CLCN6	REV__nc|ENSG00000011021|P51797-6|CLCN6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7975769042969	2	505.797675	1009.5808	-0.89988	-0.00045516	1.6594	0.00083933	0.75954	0.00038417	505.7983780077611	80.737	0.92451	80.761	80.445	81.37	0.023911					49	22	3	0	0	0	0.79525	1	9980	9980		60.972	4.2509	1	1326500	+		24665	19915	16994	17032	28565	28565					0.07638913620087351
IEHLKSFV	8	Unmodified	_IEHLKSFV_					0	0	0			REV__ENSG00000175175|ENST00000308249|PPM1E	REV__ENSG00000175175|ENST00000308249|PPM1E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3160400390625	2	486.779285	971.544017	0.10177	4.9538E-05	-2.4937	-0.0012139	-2.3919	-0.0011643	486.7774946894516	39.452	0.26945	39.452	39.357	39.627	0					13	7	3	0	0	0	0.027866	1	3380	3380		31.955	0	1	142730	+		24666	26923	16995	17033	28566	28566					0.057106617941940385
IEHNACFSLSN	11	Unmodified	_IEHNACFSLSN_					0	0	0			REV__ENSG00000183024|ENST00000328890|OR1G1	REV__ENSG00000183024|ENST00000328890|OR1G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.18719482421875	3	412.188884	1233.54482	-0.5634	-0.00023223	-2.3144	-0.00095399	-2.8778	-0.0011862	412.18788148691146	36.024	1.5204	35.819	35.506	37.027	-0.20518					108	40	4	0	0	0	0.91387	1	2816	2816		50.791	0	1	10327000	+		24667	27527	16996	17034	28567	28567					-0.06260911619051512
IEHPWYDN	8	Unmodified	_IEHPWYDN_					0	0	0			REV__ENST00000565384.1_1_16:27236480-27241947:-|nuORF;REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	REV__ENST00000565384.1_1_16:27236480-27241947:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2859497070312	2	537.237981	1072.46141	-0.45286	-0.00024329	3.9759	0.002136	3.523	0.0018927	537.2387536662419	65.849	0.49587	65.608	65.372	65.867	-0.24145					16	11	2	0	0	0	0.027866	1	7557	7557		25.45	0	1	113780	+		24668	26331;35267	16997	17035	28568	28568					-0.07192280004619533
IEIARQLT	8	Unmodified	_IEIARQLT_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2;ENSG00000115904|ENST00000402219|SOS1	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.3106689453125	2	472.282192	942.549831	-0.13047	-6.1617E-05	0.1418	6.6969E-05	0.011333	5.3525E-06	472.2819927411931	20.2	0.29414	20.2	20.078	20.372	0					9	5	2	0	0	0	0.027866	1	495	495		35.618	0	1	21811			24669	2208	16998	17036	28569	28569					0.0762576030585933
IEIEEALDMD	10	Unmodified	_IEIEEALDMD_					0	0	0		nc|ENSG00000124678|Q8WWU5-3|TCP11;nc|ENSG00000124678|Q8WWU5-6|TCP11;nc|ENSG00000124678|Q8WWU5-4|TCP11;ENSG00000124678|ENST00000311875|TCP11;nc|ENSG00000124678|Q8WWU5-5|TCP11;nc|ENSG00000124678|Q8WWU5-7|TCP11;nc|ENSG00000124678|Q8WWU5-2|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3431396484375	2	589.268287	1176.52202	-1.1114	-0.00065493	-3.813	-0.0022469	-4.9244	-0.0029018	589.2663343853054	90.708	0.46121	90.691	90.445	90.906	-0.016708					15	10	2	0	0	0	0.03519	1	11470	11470		32.812	2.3088	1	81363			24670	4068	16999	17037	28570	28570					-0.05917975527222552
IEIEERAR	8	Unmodified	_IEIEERAR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8062744140625	2	508.28018	1014.54581	0.085581	4.3499E-05	3.8576	0.0019607	3.9431	0.0020042	508.2815708023527	20.612	0.44419	20.444	20.098	20.542	-0.16774					11	8	2	0	0	0	0.027866	1	565	565		47.657	14.845	1	17470			24671	6479	17000	17038	28571	28571					0.039116708121468946
IEIGLPLSE	9	Unmodified	_IEIGLPLSE_					0	0	0			REV__ENST00000486492.5_1_7:149255763-149318218:-|nuORF	REV__ENST00000486492.5_1_7:149255763-149318218:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7749328613281	2	485.776408	969.538263	-0.18912	-9.1872E-05	-1.8686	-0.00090771	-2.0577	-0.00099958	485.7754400517033	25.562	0.49736	25.642	25.294	25.792	0.08009					37	11	4	0	0	0	0.70186	1	1172	1172		45.952	3.5558	1	2703000	+		24672	33594	17001	17039	28572	28572					0.05227518491869887
IEIHEDSE	8	Unmodified	_IEIHEDSE_					0	0	0		ENSG00000091622|ENST00000262483|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3	ENSG00000091622|ENST00000262483|PITPNM3	ENSG00000091622|ENST00000262483|PITPNM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2918701171875	2	486.219454	970.424355	0.18533	9.011E-05	0.79711	0.00038757	0.98243	0.00047768	486.21892906271967	81.899	0.16765	81.706	81.634	81.802	-0.19334					5	3	2	0	0	0	0.027866	1	9855	9855		12.959	5.7658	1	52757			24673	1966	17002	17040	28573	28573					-0.06203996341037055
IEIIVEQGY	9	Unmodified	_IEIIVEQGY_					0	0	0			REV__ENST00000438261.5_2_2:70515278-70520438:-|nuORF	REV__ENST00000438261.5_2_2:70515278-70520438:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.8165893554688	2	532.28714	1062.55973	0.29909	0.0001592	-0.011665	-6.2089E-06	0.28742	0.00015299	532.2868713922641	85.086	0.62072	84.948	84.705	85.326	-0.13753					27	14	3	0	0	0	0.024495	1	10312	10312		34.173	0	1	152550	+		24674	32490	17003	17041	28574	28574					0.03094903520582193
IEIIVKTQT	9	Unmodified	_IEIIVKTQT_					0	0	0		ENST00000307145.3_2_15:31667478-31667742:+|nuORF	ENST00000307145.3_2_15:31667478-31667742:+|nuORF	ENST00000307145.3_2_15:31667478-31667742:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7587280273438	2	522.818607	1043.62266	-0.39104	-0.00020445	0.456	0.0002384	0.064952	3.3958E-05	522.8187065078238	52.548	0.782	52.279	52.089	52.871	-0.26903					40	19	3	0	0	0	0.024477	1	5431	5431		27.882	1.1893	1	1167100			24675	12007	17004	17042	28575	28575					0.10259469308630287
IEIIVKTQT	9	Unmodified	_IEIIVKTQT_					0	0	0		ENST00000307145.3_2_15:31667478-31667742:+|nuORF	ENST00000307145.3_2_15:31667478-31667742:+|nuORF	ENST00000307145.3_2_15:31667478-31667742:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.818607	1043.62266	-0.91516	-0.00047846	1.0393	0.00054339	0.12419	6.4926E-05	522.8190996287656	52.343	0.54537	52.224	51.974	52.52	-0.11875	-0.034033	0.00045886	NaN	14.865	41	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1345900			24676	12007	17004	17042							0.10259469308630287
IEIIVKTQT	9	Unmodified	_IEIIVKTQT_					0	0	0		ENST00000307145.3_2_15:31667478-31667742:+|nuORF	ENST00000307145.3_2_15:31667478-31667742:+|nuORF	ENST00000307145.3_2_15:31667478-31667742:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.818607	1043.62266	-0.052493	-2.7444E-05	0.26058	0.00013624	0.20809	0.00010879	522.8185594351668	52.46	0.52405	52.27	52.067	52.591	-0.18982	0.012531	-0.00035544	NaN	14.865	40	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1069200			24677	12007	17004	17042							0.10259469308630287
IEIKPVNPS	9	Unmodified	_IEIKPVNPS_					0	0	0		ENST00000484975.5_1_20:44472824-44477348:-|nuORF;ENST00000493118.5_1_20:44472824-44485929:-|nuORF;ENST00000484783.1_1_20:44472824-44485954:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484975.5_1_20:44472824-44477348:-|nuORF	ENST00000484975.5_1_20:44472824-44477348:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77154541015625	2	498.78985	995.565146	-0.79994	-0.000399	-3.9315	-0.001961	-4.7314	-0.00236	498.7879408677486	28.545	0.23837	28.393	28.203	28.441	-0.15195					9	5	2	0	0	0	0.024541	1	1642	1642		10.265	0	1	63278			24678	2332	17005	17043	28576	28576					0.06718627103043673
IEIKRLRQF	9	Unmodified	_IEIKRLRQF_					0	0	0			REV__ENSG00000165630|ENST00000378572|PRPF18	REV__ENSG00000165630|ENST00000378572|PRPF18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.87591552734375	3	401.583785	1201.72953	-0.61662	-0.00024763	1.2132	0.0004872	0.59656	0.00023957	401.58419932237507	37.321	0.70025	37.111	36.844	37.545	-0.2092					41	17	3	0	0	0	0.024541	1	3000	3000		12.812	0	1	413730	+		24679	25908	17006	17044	28577	28577					0.13673064313616123
IEILINLIIDN	11	Unmodified	_IEILINLIIDN_					0	0	0			REV__ENSG00000197415|ENST00000362010|VEPH1	REV__ENSG00000197415|ENST00000362010|VEPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8825073242188	2	641.884478	1281.7544	-1.4215	-0.00091243	-1.7197	-0.0011038	-3.1412	-0.0020163	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0022	1	11723	11723		36.318	4.7878	1	3558500	+		24680	28301	17007	17045	28578	28578					0.12479654605704127
IEILINLIIDN	11	Unmodified	_IEILINLIIDN_					0	0	0			REV__ENSG00000197415|ENST00000362010|VEPH1	REV__ENSG00000197415|ENST00000362010|VEPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8825073242188	2	641.884478	1281.7544	0.34308	0.00022022	-3.5873	-0.0023026	-3.2442	-0.0020824	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.0238	1	11665	11665		31.53	3.6476	1	1209200	+		24681	28301	17007	17045	28579	28579					0.12479654605704127
IEILINLIIDN	11	Unmodified	_IEILINLIIDN_					0	0	0			REV__ENSG00000197415|ENST00000362010|VEPH1	REV__ENSG00000197415|ENST00000362010|VEPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8826904296875	2	641.884478	1281.7544	0.76256	0.00048947	-3.9803	-0.0025549	-3.2178	-0.0020654	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	0.99129	1	11770	11770		38.754	5.9412	1	3421300	+		24682	28301	17007	17045	28580	28580					0.12479654605704127
IEILINLIIDN	11	Unmodified	_IEILINLIIDN_					0	0	0			REV__ENSG00000197415|ENST00000362010|VEPH1	REV__ENSG00000197415|ENST00000362010|VEPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.883056640625	2	641.884478	1281.7544	-0.70618	-0.00045328	-2.5549	-0.0016399	-3.261	-0.0020932	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	0.99129	3	11990	11763;11929;11990		38.754	7.1193	1	3453200	+		24683	28301	17007	17045	28581;28582;28583	28583					0.12479654605704127
IEILLSLPK	9	Unmodified	_IEILLSLPK_					0	0	0			REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3233032226562	2	513.333893	1024.65323	0.3462	0.00017772	0.083348	4.2785E-05	0.42955	0.0002205	513.333723624019	74.595	0.58965	74.336	74.071	74.661	-0.25887					26	13	3	0	0	0	0.024495	1	9073	9073		34.173	0	1	178840	+		24684	21208	17008	17046	28584	28584					0.14189247693639118
IEILWPRF	8	Unmodified	_IEILWPRF_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.31689453125	2	537.310752	1072.60695	0.15388	8.2683E-05	-3.4275	-0.0018416	-3.2736	-0.0017589	537.3086168932485	20.916	0.63861	20.72	20.435	21.073	-0.19577					31	12	4	0	0	0	0.027866	1	612	612		24.203	0	1	198980	+		24685	23912	17009	17047	28585	28585					0.07355227582229418
IEINMLDEKL	10	Unmodified	_IEINMLDEKL_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;nc|ENSG00000109118|Q96QT6-4|PHF12;ENSG00000109118|ENST00000332830|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.58746337890625	3	406.553051	1216.63732	-0.17308	-7.0367E-05	-4.1057	-0.0016692	-4.2788	-0.0017396	406.5511973563599	25.434	0.58441	25.207	25.018	25.602	-0.22683					23	13	3	0	0	0	0.03519	1	1234	1234		42.864	10.83	1	221010			24686	17178	17010	17048	28586	28586					0.037671733944534935
IEIQWVKP	8	Unmodified	_IEIQWVKP_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	506.794935	1011.57532	-0.67874	-0.00034398	-0.34247	-0.00017356	-1.0212	-0.00051754	506.793842228708	47.371	0.79348	47.43	46.729	47.522	0.059097					25	21	2	0	0	0	0.027866	1	4596	4596		50.025	0	1	141020			24687	3296	17011	17049	28587	28587					0.06999234828276713
IEIYRPPAS	9	Unmodified	_IEIYRPPAS_					0	0	0		nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3037719726562	2	523.287474	1044.5604	-0.55503	-0.00029044	-0.64736	-0.00033875	-1.2024	-0.00062919	523.2861890316416	90.735	0.50407	90.61	90.167	90.671	-0.12512					15	11	2	0	0	0	0.024477	1	11070	11070		20.947	0	1	42486			24688	2239	17012	17050	28588	28588					0.03989742960266085
IEKCHATWV	9	Unmodified	_IEKCHATWV_					0	0	0			REV__ENSG00000044524|ENST00000336596|EPHA3	REV__ENSG00000044524|ENST00000336596|EPHA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7991333007812	2	543.773677	1085.5328	-0.86387	-0.00046975	-1.7796	-0.0009677	-2.6435	-0.0014374	544.272941298391	72.144	0.12279	71.946	71.869	71.992	-0.19811					4	2	2	0	0	0	0.024511	1	8437	8437		40.778	22.454	1	24947	+		24689	20114	17013	17051	28589	28589					-0.006544835716113084
IEKCSVLPL	9	Unmodified	_IEKCSVLPL_					0	0	0			REV__ENST00000502313.1_1_5:77940258-77940606:-|nuORF	REV__ENST00000502313.1_1_5:77940258-77940606:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.34489	2	10646	10646;10694		69.628	7.119	1	8460100	+		24690	33925	17014	17052	28590;28591	28590					0.06244455373735036
IEKCSVLPL	9	Unmodified	_IEKCSVLPL_					0	0	0			REV__ENST00000502313.1_1_5:77940258-77940606:-|nuORF	REV__ENST00000502313.1_1_5:77940258-77940606:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2900695800781	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.85329	1	10294	10294		35.618	0	1	10571000	+		24691	33925	17014	17052	28592	28592					0.06244455373735036
IEKETRLVS	9	Unmodified	_IEKETRLVS_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.286865234375	2	537.811313	1073.60807	-1.723	-0.00092665	-2.9145	-0.0015674	-4.6375	-0.0024941	538.311042847126	91.652	0.47623	91.503	91.353	91.829	-0.1487					15	10	2	0	0	0	0.024523	1	11230	11230		15.642	7.4105	1	52018	+		24692	22092	17015	17053	28593	28593					0.07421397160464949
IEKFSECASL	10	Unmodified	_IEKFSECASL_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.237060546875	2	563.776082	1125.53761	0.18613	0.00010493	-2.5114	-0.0014159	-2.3253	-0.001311	563.7743126018572	53.052	0.55266	52.925	52.552	53.104	-0.12705					19	12	2	0	0	0	0.03519	1	5510	5510		17.468	3.3309	1	275500	+		24693	26049	17016	17054	28594	28594					-0.02013644219505295
IEKFSECASL	10	Unmodified	_IEKFSECASL_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.776082	1125.53761	-0.70613	-0.0003981	-0.25785	-0.00014537	-0.96398	-0.00054347	563.7756992502775	52.861	0.4894	52.861	52.634	53.124	0	-0.0058398	0.0014197	NaN	23.523	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293670	+		24694	26049	17016	17054							-0.02013644219505295
IEKFSECASL	10	Unmodified	_IEKFSECASL_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.776082	1125.53761	-0.35805	-0.00020186	-0.72267	-0.00040742	-1.0807	-0.00060928	563.7754042292886	52.923	0.52689	52.775	52.569	53.096	-0.14723	-0.091574	0.00089559	NaN	23.523	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319750	+		24695	26049	17016	17054							-0.02013644219505295
IEKFSECASL	10	Unmodified	_IEKFSECASL_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.776082	1125.53761	-0.29185	-0.00016454	-1.0891	-0.00061401	-1.381	-0.00077855	563.7750555040087	52.682	0.60279	52.774	52.486	53.088	0.091938	-0.093331	0.00048242	NaN	23.523	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393310	+		24696	26049	17016	17054							-0.02013644219505295
IEKFSECASL	10	Unmodified	_IEKFSECASL_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.776082	1125.53761	0.40887	0.00023051	-3.7161	-0.0020951	-3.3073	-0.0018646	563.7738437899253	53.251	0.7802	52.993	52.482	53.262	-0.25839	0.12599	-0.0024797	NaN	23.523	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269740	+		24697	26049	17016	17054							-0.02013644219505295
IEKFSECASL	10	Unmodified	_IEKFSECASL_					0	0	0			REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	REV__ENST00000546313.1_1_11:114167278-114168881:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	563.776082	1125.53761	-0.10915	-6.1538E-05	-2.6431	-0.0014901	-2.7522	-0.0015516	563.7745007424824	53.063	0.54261	52.874	52.591	53.133	-0.18982	0.0065059	-0.0012697	NaN	23.523	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383940	+		24698	26049	17016	17054							-0.02013644219505295
IEKHDCNLL	9	Unmodified	_IEKHDCNLL_					0	0	0		ENST00000464003.1_1_2:206547990-206565476:+|nuORF	ENST00000464003.1_1_2:206547990-206565476:+|nuORF	ENST00000464003.1_1_2:206547990-206565476:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.77587890625	2	542.776416	1083.53828	-0.4435	-0.00024072	0.32793	0.00017799	-0.11558	-6.2732E-05	542.7765201981401	67.725	1.4844	67.747	67.387	68.871	0.021263					110	38	5	0	0	0	0.082191	1	7988	7988		116.9	20.713	1	13510000			24699	14749	17017	17055	28595	28595					-0.00014804779789301392
IEKIAIRVR	9	Unmodified	_IEKIAIRVR_					0	0	0			REV__ENSG00000142733|ENST00000357582|MAP3K6	REV__ENSG00000142733|ENST00000357582|MAP3K6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.3432006835938	2	549.361308	1096.70806	-0.67352	-0.00037001	1.642	0.00090206	0.96849	0.00053205	549.3622325749624	49.988	0.19743	50.069	49.919	50.117	0.08099					8	5	2	0	0	0	0.024523	1	5113	5113		21.96	0	1	72423	+		24700	24181	17018	17056	28596	28596					0.16357679284942606
IEKIRLTNQ	9	Unmodified	_IEKIRLTNQ_					0	0	0			REV__ENST00000478160.1_1_3:160945095-160953023:+|nuORF	REV__ENST00000478160.1_1_3:160945095-160953023:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.832275390625	2	557.83258	1113.65061	0.30703	0.00017127	-1.0903	-0.00060823	-0.78331	-0.00043695	557.8320062463827	22.599	1.348	22.397	21.808	23.156	-0.20198					66	28	4	0	0	0	0.16638	1	773	773		95.815	2.6197	1	3005500	+		24701	26344	17019	17057	28597	28597					0.09832792288671044
IEKISPLPANL	11	Unmodified	_IEKISPLPANL_					0	0	0			REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8565063476562	2	597.858264	1193.70197	-0.21005	-0.00012558	-3.4027	-0.0020343	-3.6127	-0.0021599	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	0.9728	1	11442	11442		42.864	1.4377	1	5598500	+		24702	29196	17020	17058	28598	28598					0.11287116262769814
IEKKEAKL	8	Unmodified	_IEKKEAKL_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.8002014160156	2	479.800217	957.585882	-0.58113	-0.00027883	0.50815	0.00024381	-0.072981	-3.5016E-05	479.80030679524384	22.205	0.61396	22.02	21.667	22.281	-0.18539					26	12	3	0	0	0	0.50717	1	754	754		84.916	5.4645	1	460370			24703	5051	17021	17059	28599	28599					0.1053921748269886
IEKKLKAN	8	Unmodified	_IEKKLKAN_					0	0	0			REV__AIMP1|p.K129Ifs*24|1|0.12|ENSG00000164022|chr4:106328237-106328238|-/TAATGTCATTCAT|frameshift_variant	REV__AIMP1|p.K129Ifs*24|1|0.12|ENSG00000164022|chr4:106328237-106328238|-/TAATGTCATTCAT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2877502441406	2	472.300384	942.586216	0.46984	0.0002219	2.4601	0.0011619	2.93	0.0013838	472.3024894119717	94.321	0.80003	94.199	93.754	94.554	-0.12215					29	18	3	0	0	0	0.027866	1	11661	11661		29.15	0	1	396300	+		24704	19093	17022	17060	28600	28600					0.11262637202571568
IEKLGRFTK	9	Unmodified	_IEKLGRFTK_					0	0	0		ENST00000591780.1_1_18:12075195-12075588:-|nuORF	ENST00000591780.1_1_18:12075195-12075588:-|nuORF	ENST00000591780.1_1_18:12075195-12075588:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.27685546875	2	546.332216	1090.64988	-0.62731	-0.00034272	1.0321	0.00056387	0.4048	0.00022115	546.3323388623385	29.196	0.17611	29.023	28.937	29.113	-0.17258					6	3	2	0	0	0	0.024539	1	1759	1759		9.7057	0	1	21541			24705	17361	17023	17061	28601	28601					0.10817997639651367
IEKLHKKNKAS	11	Unmodified	_IEKLHKKNKAS_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	648.392822265625	2	648.393336	1294.77212	-2.3194	-0.0015039	1.8386	0.0011922	-0.48075	-0.00031171	648.3947727182727	105.47	0.99561	105.35	105.03	106.03	-0.12444					66	30	4	0	0	0	1.0557	1	13146	13146		23.523	0	1	1302600	+		24706	36819	17024	17062	28602	28602					0.13652414651232903
IEKLHPATLMI	11	Unmodified	_IEKLHPATLMI_					0	0	0		nc|ENSG00000214198|Q6P2S7|TTC41P;nc|ENSG00000214198|Q6P2S7-2|TTC41P;ENST00000551270.1_1_12:104283206-104309165:-|nuORF	nc|ENSG00000214198|Q6P2S7|TTC41P	nc|ENSG00000214198|Q6P2S7|TTC41P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.58184814453125	3	422.581053	1264.72133	0.40285	0.00017024	1.6769	0.00070862	2.0797	0.00087886	422.5816975285083	95.745	3.4477	95.748	94.651	98.099	0.0033798					189	79	4	0	0	0	1.0521	1	12151	12151		27.644	11.114	1	683320			24707	18715	17025	17063	28603	28603					0.09955749282016768
IEKLKQQLN	9	Unmodified	_IEKLKQQLN_					0	0	0		ENSG00000119636|ENST00000394009|BBOF1	ENSG00000119636|ENST00000394009|BBOF1	ENSG00000119636|ENST00000394009|BBOF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3245239257812	2	557.334956	1112.65536	-0.72986	-0.00040678	0.14478	8.0692E-05	-0.58508	-0.00032609	557.3349108597677	38.756	0.6966	38.657	38.358	39.054	-0.098755					35	18	2	0	0	0	0.024477	1	3226	3226		20.947	0	1	455960			24708	3749	17026	17064	28604	28604					0.1035367643146401
IEKLLSCIL	9	Unmodified	_IEKLLSCIL_					0	0	0			REV__ENST00000534699.5_1_1:115272937-115273130:-|nuORF	REV__ENST00000534699.5_1_1:115272937-115273130:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.313720703125	2	516.312103	1030.60965	0.62813	0.00032431	2.0739	0.0010708	2.702	0.0013951	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	0.87448	1	12175	12175		34.173	3.8548	1	32395000	+		24709	34648	17027	17065	28605	28605					0.09557314924882121
IEKLRKQV	8	Unmodified	_IEKLRKQV_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.30389404296875	2	507.326934	1012.63931	-0.054867	-2.7836E-05	-1.0192	-0.00051705	-1.074	-0.00054488	507.3262348621084	41.275	1.2124	41.275	40.908	42.12	0					82	34	4	0	0	0	0.027866	1	3713	3713		42.396	0	1	5861900			24710	5686	17028	17066	28606	28606					0.13350014985235248
IEKLSVHVI	9	Unmodified	_IEKLSVHVI_					0	0	0		nc|ENSG00000122224|Q9HBG7-4|LY9;ENST00000490902.1_1_1:160768767-160771704:+|nuORF	nc|ENSG00000122224|Q9HBG7-4|LY9	nc|ENSG00000122224|Q9HBG7-4|LY9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3049926757812	2	519.321317	1036.62808	-0.69238	-0.00035957	1.2562	0.00065237	0.56382	0.0002928	519.8209874105885	93.445	0.38121	93.453	93.225	93.606	0.0077209					10	8	2	0	0	0	0.024418	1	11812	11812		37.812	0	1	71226			24711	18227	17029	17067	28607	28607					0.11123192891091094
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3035278320312	2	523.301736	1044.58892	0.11837	6.1943E-05	2.9484	0.0015429	3.0668	0.0016049	523.3032736484524	85.135	2.651	85.135	83.649	86.3	0					186	62	4	0	0	0	0.96906	1	10638	10638		26.693	3.1702	1	2671500			24712	922	17030	17068	28608	28608					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3034057617188	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.77768	1	11086	11086		40.778	2.9666	1	10615000			24713	922	17030	17068	28609	28609					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3037719726562	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.48817	2	11105	11057;11105		60.118	10.677	1	11897000			24714	922	17030	17068	28610;28611	28611					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3038330078125	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.72875	1	10819	10819		44.117	8.4985	1	14072000			24715	922	17030	17068	28612	28612					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.301736	1044.58892	0.82974	0.00043421	2.4108	0.0012616	3.2405	0.0016958	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	0.77768	2	10360	10360;10457		40.778	11.608	1	3893600			24716	922	17030	17068	28613;28614	28613					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.301736	1044.58892	0.47324	0.00024765	2.705	0.0014155	3.1782	0.0016632	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.56934	4	10809	10720;10785;10809;10833		54.776	4.9302	1	13836000			24717	922	17030	17068	28615;28616;28617;28618	28617					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3038940429688	2	523.301736	1044.58892	-0.28114	-0.00014712	3.8839	0.0020324	3.6027	0.0018853	523.3036290350911	89.646	0.60334	89.518	89.242	89.846	-0.12774					45	13	4	0	0	0	0.77768	1	10993	10993		40.778	2.9666	1	897320			24718	922	17030	17068	28619	28619					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.30322265625	2	523.301736	1044.58892	0.50944	0.00026659	2.7838	0.0014567	3.2932	0.0017233	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.82115	1	10452	10452		37.812	3.639	1	3714800			24719	922	17030	17068	28620	28620					0.06840724545213561
IEKLVELCV	9	Unmodified	_IEKLVELCV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.77768	4	10782	10596;10656;10782;10794		40.778	11.629	1	14210000			24720	922	17030	17068	28621;28622;28623;28624	28623					0.06840724545213561
IEKMELALV	9	Unmodified	_IEKMELALV_					0	0	0		ENSG00000135407|ENST00000549994|AVIL	ENSG00000135407|ENST00000549994|AVIL	ENSG00000135407|ENST00000549994|AVIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3030395507812	2	523.301736	1044.58892	0.099796	5.2223E-05	3.2844	0.0017187	3.3842	0.001771	523.3035080797467	89.564	0.58639	89.579	89.299	89.885	0.015564					33	13	3	0	0	0	0.5973	1	11228	11228		52.937	3.4952	1	745530			24721	4891	17031	17069	28625	28625					0.06840724545190824
IEKMGLIRHN	10	Unmodified	_IEKMGLIRHN_					0	0	0			REV__ENST00000519928.1_1_5:153431341-153431434:+|nuORF	REV__ENST00000519928.1_1_5:153431341-153431434:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.2455139160156	3	404.229014	1209.66521	0.68935	0.00027865	0.16123	6.5176E-05	0.85058	0.00034383	404.22891345732864	32.385	0.27027	32.385	32.224	32.494	0					8	6	2	0	0	0	0.03519	1	2223	2223		32.751	11.065	1	63129	+		24722	34276	17032	17070	28626	28626					0.06876541165229355
IEKNSWSSL	9	Unmodified	_IEKNSWSSL_					0	0	0		ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000479212.5_1_3:113627916-113664322:+|nuORF;nc|ENSG00000178075|Q8IYS0-2|GRAMD1C	ENSG00000178075|ENST00000358160|GRAMD1C	ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.816650390625	2	532.274564	1062.53457	0.14268	7.5945E-05	-2.9397	-0.0015647	-2.7971	-0.0014888	532.7737102221658	86.718	0.89848	86.576	86.147	87.045	-0.14218					26	20	2	0	0	0	0.024374	1	10606	10606		32.812	4.9302	1	61887			24723	8789	17033	17071	28627	28627					0.00580848718004745
IEKPFKCE	8	Unmodified	_IEKPFKCE_					0	0	0		ENST00000588883.5_1_19:44679604-44681824:+|nuORF;ENSG00000167380|ENST00000337433|ZNF226	ENST00000588883.5_1_19:44679604-44681824:+|nuORF	ENST00000588883.5_1_19:44679604-44681824:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.30755615234375	2	497.257328	992.500103	-0.44016	-0.00021887	1.5485	0.00077001	1.1084	0.00055114	497.2600513054198	22.171	0.37844	21.985	21.764	22.142	-0.18539					11	7	2	0	0	0	0.027866	1	748	748		29.15	0	1	15905			24724	7681	17034	17072	28628	28628					0.0035530930554159568
IEKPLISTHL	10	Unmodified	_IEKPLISTHL_					0	0	0			REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8432006835938	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0002	1	11094	11094		45.972	9.5255	1	5880000	+		24725	22209	17035	17073	28629	28629					0.10690847091291289
IEKQIHLCD	9	Unmodified	_IEKQIHLCD_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.794677734375	2	549.784241	1097.55393	0.091205	5.0143E-05	-2.675	-0.0014707	-2.5838	-0.0014205	549.7833505797045	67.123	0.24738	66.874	66.792	67.04	-0.2484					8	5	2	0	0	0	0.024506	1	7728	7728		16.473	0	1	177110	+		24726	27338	17036	17074	28630	28630					0.009054817372543766
IEKQIHNI	8	Unmodified	_IEKQIHNI_					0	0	0		ZNF808|p.E109Q|1|0.13|ENSG00000198482|chr19:52553241-52553241|G/C|missense_variant	ZNF808|p.E109Q|1|0.13|ENSG00000198482|chr19:52553241-52553241|G/C|missense_variant	ZNF808|p.E109Q|1|0.13|ENSG00000198482|chr19:52553241-52553241|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.2556457519531	2	497.787641	993.56073	0.48424	0.00024105	-4.2053	-0.0020934	-3.7211	-0.0018523	497.7855657436077	71.342	0.33719	71.136	71.007	71.344	-0.20613					11	7	2	0	0	0	0.027866	1	8351	8351		40.573	0	1	142840			24727	38211	17037	17075	28631	28631					0.06369162680130103
IEKQKKII	8	Unmodified	_IEKQKKII_					0	0	0			REV__ENSG00000108773|ENST00000225916|KAT2A	REV__ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	500.331685	998.648816	-0.042113	-2.107E-05	-0.98557	-0.00049311	-1.0277	-0.00051418	500.3312183422869	24.394	0.26361	24.179	23.954	24.218	-0.2151					7	5	2	0	0	0	0.027866	1	1034	1034		20.482	2.1574	1	24537	+		24728	21760	17038	17076	28632	28632					0.1494378327075765
IEKQQRSL	8	Unmodified	_IEKQQRSL_					0	0	0			REV__nc|ENSG00000119711|Q02252-2|ALDH6A1	REV__nc|ENSG00000119711|Q02252-2|ALDH6A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2898254394531	2	501.290548	1000.56654	-0.41083	-0.00020595	0.019509	9.7795E-06	-0.39133	-0.00019617	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	1.0514	1	10402	10402		29.17	1.2878	1	2038300	+		24729	36606	17039	17077	28633	28633					0.06628261191815454
IEKRVLLL	8	Unmodified	_IEKRVLLL_					0	0	0			REV__ENST00000265896.9_1_8:126011232-126011484:+|nuORF	REV__ENST00000265896.9_1_8:126011232-126011484:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.7846374511719	2	492.334227	982.653902	-0.58906	-0.00029001	-0.44928	-0.0002212	-1.0383	-0.00051121	492.33392992895097	78.018	0.29208	77.756	77.612	77.904	-0.26202					8	6	2	0	0	0	0.027866	1	9304	9304		25.45	13.939	1	49711	+		24730	29752	17040	17078	28634	28634					0.1618808713337785
IEKVRKWEKKW	11	Unmodified	_IEKVRKWEKKW_					0	0	0		ENST00000432926.2_1_12:122459901-122481985:+|nuORF;ENSG00000110987|ENST00000261822|BCL7A;nc|ENSG00000110987|Q4VC05-2|BCL7A;nc|ENSG00000106635|Q9BQE9-4|BCL7B;nc|ENSG00000106635|Q9BQE9-3|BCL7B;ENSG00000106635|ENST00000223368|BCL7B	ENST00000432926.2_1_12:122459901-122481985:+|nuORF	ENST00000432926.2_1_12:122459901-122481985:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.96807861328125	3	510.636549	1528.88782	0.29468	0.00015048	-4.3718	-0.0022324	-4.0771	-0.0020819	510.63411234326145	103.04	1.4676	102.92	102.45	103.92	-0.12723					85	34	3	0	0	0	1.1135	1	12874	12874		7.0192	1.3204	1	385250			24731	3080	17041	17079	28635	28635					0.14452938502040524
IEKYVLRCL	9	Unmodified	_IEKYVLRCL_					0	0	0			REV__nc|ENSG00000134955|Q8TED4-4|SLC37A2	REV__nc|ENSG00000134955|Q8TED4-4|SLC37A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.8088989257812	2	568.828452	1135.64235	-0.27242	-0.00015496	2.2576	0.0012842	1.9852	0.0011292	568.8302571070175	76.875	0.37962	76.706	76.439	76.818	-0.16854					14	8	3	0	0	0	0.024427	1	9104	9104		34.173	3.6689	1	106420	+		24732	23498	17042	17080	28636	28636					0.07995522047735903
IELAKKLVSVL	11	Unmodified	_IELAKKLVSVL_					0	0	0			REV__nc|ENSG00000166946|O95273-3|CCNDBP1	REV__nc|ENSG00000166946|O95273-3|CCNDBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9231262207031	3	404.935713	1211.78531	-1.1377	-0.0004607	-4.4456	-0.0018002	-5.5833	-0.0022609	404.9338733170168	26.28	0.096483	26.116	26.069	26.165	-0.16331					4	2	2	0	0	0	0.024723	1	1319	1319		31.068	11.038	1	54141	+		24733	26088	17043	17081	28637	28637					0.1878885271062245
IELCSAAVLL	10	Unmodified	_IELCSAAVLL_					0	0	0			REV__ENSG00000142484|ENST00000270560|TM4SF5	REV__ENSG00000142484|ENST00000270560|TM4SF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.3138427734375	2	516.293911	1030.57327	0.23271	0.00012015	-0.06305	-3.2553E-05	0.16966	8.7596E-05	516.2938898273574	98.036	0.37086	98.034	97.769	98.139	-0.0020752					13	8	2	0	0	0	0.03519	1	12423	12423		42.396	5.237	1	200330	+		24734	24155	17044	17082	28638	28638					0.05920438028147146
IELDGRRSY	9	Unmodified	_IELDGRRSY_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.31689453125	2	554.790912	1107.56727	0.3006	0.00016677	-0.66587	-0.00036942	-0.36527	-0.00020265	554.7901491038521	21.976	0.71297	21.787	21.434	22.147	-0.18894					26	14	3	0	0	0	0.024523	1	764	764		21.96	11.094	1	58175	+		24735	22183	17045	17083	28639	28639					0.017790558408705692
IELEKEPL	8	Unmodified	_IELEKEPL_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3087158203125	2	485.776408	969.538263	-0.90483	-0.00043955	0.5588	0.00027145	-0.34603	-0.0001681	485.775506152266	20.25	0.39309	20.25	19.979	20.372	0					12	7	2	0	0	0	0.027866	1	523	523		47.916	0	1	60289	+		24736	25683	17046	17084	28640	28640					0.05227518491858518
IELETFIEPLA	11	Unmodified	_IELETFIEPLA_					0	0	0			REV__ENSG00000130741|ENST00000253039|EIF2S3	REV__ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.775390625	3	425.567466	1273.68057	0.058198	2.4767E-05	1.5247	0.00064885	1.5829	0.00067362	425.9020951702716	42.35	0.18999	42.12	42.065	42.255	-0.23029					6	4	2	0	0	0	0.024759	1	3789	3789		36.318	16.691	1	29264	+		24737	23146	17047	17085	28641	28641					0.05467686443398634
IELFIVIGN	9	Unmodified	_IELFIVIGN_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2880554199219	2	509.302593	1016.59063	-0.62736	-0.00031952	2.7452	0.0013982	2.1179	0.0010786	509.30359123098185	65.039	0.56189	64.783	64.582	65.144	-0.25563					22	13	2	0	0	0	0.024506	1	7405	7405		16.473	0	1	295350			24738	1101;15776	17048	17086	28642	28642					0.08300101625468415
IELGDTIAEQP	11	Unmodified	_IELGDTIAEQP_					0	0	0			REV__nc|ENSG00000121481|Q99496-2|RNF2	REV__nc|ENSG00000121481|Q99496-2|RNF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	592.3446655273438	2	593.303518	1184.59248	-0.87542	-0.00051939	-1.9427	-0.0011526	-2.8181	-0.001672	593.3032549875019	61.56	0.24998	61.303	61.133	61.383	-0.25725					7	5	2	0	0	0	0.024736	1	6866	6866		29.17	1.0886	1	56466	+		24739	22597	17049	17087	28643	28643					0.007570658527583873
IELGSLVKD	9	Unmodified	_IELGSLVKD_					0	0	0			REV__ENSG00000165458|ENST00000298229|INPPL1	REV__ENSG00000165458|ENST00000298229|INPPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.24237060546875	2	487.281857	972.549162	-1.465	-0.00071387	2.1916	0.0010679	0.72664	0.00035408	487.2828951000889	60.705	0.45573	60.783	60.647	61.103	0.078884					16	11	2	0	0	0	0.024263	1	6935	6935		42.396	5.237	1	359830	+		24740	25887	17050	17088	28644	28644					0.06178920866148019
IELKKGGAEI	10	Unmodified	_IELKKGGAEI_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.3161010742188	2	529.316232	1056.61791	1.2844	0.00067988	-1.8688	-0.00098917	-0.58433	-0.00030929	529.3151936383892	36.287	1.5152	36.089	35.809	37.324	-0.19829					79	38	4	0	0	0	0.55353	1	2829	2829		82.241	2.5279	1	6646300	+		24741	24228	17051	17089	28645	28645					0.09186585165844008
IELLKVKE	8	Unmodified	_IELLKVKE_					0	0	0			REV__nc|ENSG00000117614|O95926-2|SYF2	REV__nc|ENSG00000117614|O95926-2|SYF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2918701171875	2	486.310418	970.606283	-0.45203	-0.00021983	-0.35933	-0.00017474	-0.81136	-0.00039457	486.3102688374571	81.861	0.5134	81.719	81.483	81.997	-0.14249					18	11	2	0	0	0	0.027866	1	9822	9822		23.042	0	1	99183	+		24742	22362	17052	17090	28646	28646					0.11980388142524134
IELLNVTEL	9	Unmodified	_IELLNVTEL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2582397460938	2	522.30279	1042.59103	-1.351	-0.00070563	-1.4739	-0.00076981	-2.8249	-0.0014754	522.3019767519014	24.541	0.49386	24.494	24.308	24.802	-0.047148					17	10	2	0	0	0	0.024457	1	1081	1081		37.159	1.5408	1	135820			24743	3443	17053	17091	28647	28647					0.0714347655466554
IELLYDKGF	9	Unmodified	_IELLYDKGF_					0	0	0			REV__ENST00000451020.6_1_4:419554-419923:-|nuORF	REV__ENST00000451020.6_1_4:419554-419923:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3372192382812	2	549.297507	1096.58046	-0.33198	-0.00018235	3.2549	0.0017879	2.9229	0.0016055	549.2992560040797	68.14	1.2479	67.852	67.47	68.718	-0.28834					59	31	2	0	0	0	0.024205	1	8235	8235		63.306	0	1	1846600	+		24744	32715	17054	17092	28648	28648					0.03603493900232024
IELNSHLL	8	Unmodified	_IELNSHLL_					0	0	0			REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	469.76904296875	2	469.768917	937.523281	-0.18079	-8.4931E-05	-0.071099	-3.34E-05	-0.25189	-0.00011833	469.7688162799691	35.598	0.61793	35.385	35	35.618	-0.21246					32	15	3	0	0	0	0.39824	1	2718	2718		97.473	5.2821	1	1185700	+		24745	30904	17055	17093	28649	28649					0.052020714145328384
IELNSHLL	8	Unmodified	_IELNSHLL_					0	0	0			REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	469.768917	937.523281	-0.76794	-0.00036075	1.9685	0.00092473	1.2005	0.00056398	469.7695441698767	35.577	0.46442	35.555	35.386	35.851	-0.021767	0.14176	0.0015459	NaN	97.473	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117710	+		24746	30904	17055	17093							0.052020714145328384
IELNSHLL	8	Unmodified	_IELNSHLL_					0	0	0			REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	469.768917	937.523281	-0.18079	-8.4931E-05	-0.071099	-3.34E-05	-0.25189	-0.00011833	469.7688162799691	35.598	0.61793	35.385	35	35.618	-0.21246	-0.02814	-0.00037035	NaN	97.473	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185700	+		24747	30904	17055	17093							0.052020714145328384
IELNSHLL	8	Unmodified	_IELNSHLL_					0	0	0			REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	REV__ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	469.768917	937.523281	-0.7582	-0.00035618	0.65321	0.00030686	-0.10499	-4.9323E-05	469.7690140727694	35.531	0.45362	35.344	35.1	35.554	-0.18675	-0.069495	0.00031016	NaN	97.473	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	980100	+		24748	30904	17055	17093							0.052020714145328384
IELPSMAASS	10	Unmodified	_IELPSMAASS_					0	0	0		ENST00000544283.5_1_2:91823926-91845846:-|nuORF	ENST00000544283.5_1_2:91823926-91845846:-|nuORF	ENST00000544283.5_1_2:91823926-91845846:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.26959228515625	2	503.2497	1004.48485	-0.28358	-0.00014271	1.1485	0.00057796	0.86487	0.00043524	503.2502139678756	39.707	0.38397	39.477	39.313	39.697	-0.23021					11	7	2	0	0	0	0.03519	1	3397	3397		26.693	9.3279	1	170770			24749	16478	17056	17094	28650	28650					-0.01721602282304957
IELQFSELDD	10	Unmodified	_IELQFSELDD_					0	0	0			REV__ENST00000305752.4_1_15:38756353-38762648:+|nuORF	REV__ENST00000305752.4_1_15:38756353-38762648:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5548095703125	3	403.527559	1207.56085	0.33369	0.00013465	3.3367	0.0013465	3.6704	0.0014811	403.86347027409863	22.553	0.41049	22.368	22.189	22.6	-0.18539					12	8	2	0	0	0	0.03519	1	789	789		56.632	1.9099	1	33236	+		24750	26556	17057	17095	28651	28651					-0.034629269011929864
IELRERRNL	9	Unmodified	_IELRERRNL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.88800048828125	3	400.238678	1197.6942	0.71886	0.00028772	-0.73456	-0.000294	-0.015695	-6.2817E-06	400.2382656891417	22.911	0.46189	22.725	22.507	22.969	-0.18539					19	9	3	0	0	0	0.024466	1	859	859		31.53	0	1	75726			24751	164	17058	17096	28652	28652					0.10326401785846429
IELVKLATHL	10	Unmodified	_IELVKLATHL_					0	0	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.8533325195312	2	568.855524	1135.69649	0.16699	9.4994E-05	-3.9808	-0.0022645	-3.8138	-0.0021695	568.8531476773758	101.29	1.5817	101.12	100.84	102.42	-0.17178					102	36	5	0	0	0	1.0508	1	12556	12556		39.253	2.0937	1	6685000	+		24752	24628	17059	17097	28653	28653					0.1340743747093711
IELVLSSNI	9	Unmodified	_IELVLSSNI_					0	0	0			REV__ENSG00000113532|ENST00000231461|ST8SIA4	REV__ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.8065185546875	2	494.289682	986.564812	0.56074	0.00027717	-0.85185	-0.00042106	-0.29111	-0.00014389	494.2891159645112	81.982	0.99067	81.872	81.605	82.596	-0.11006					50	23	3	0	0	0	0.024397	1	10207	10207		39.253	0	1	716300	+		24753	22071	17060	17098	28654	28654					0.07099207383191697
IELVSDKPDII	11	Unmodified	_IELVSDKPDII_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.3509521484375	2	621.353011	1240.69147	-0.76542	-0.00047559	-4.1212	-0.0025607	-4.8866	-0.0030363	621.3502573824375	102.84	0.51168	102.84	102.61	103.12	0					28	12	3	0	0	0	1.0075	1	13191	13191		35.152	4.8343	1	1174100			24754	8932	17061	17099	28655	28655					0.08075088817668075
IELYGIIC	8	Unmodified	_IELYGIIC_					0	0	0			REV__ENST00000478602.1_1_2:42946162-42950180:+|nuORF	REV__ENST00000478602.1_1_2:42946162-42950180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2510070800781	2	462.248972	922.48339	-0.7696	-0.00035574	4.3248	0.0019991	3.5552	0.0016434	462.25086787587975	30.319	1.0904	30.141	29.782	30.872	-0.17817					65	25	4	0	0	0	0.95417	1	1906	1906		44.531	2.0566	1	4652100	+		24755	20225	17062	17100	28656	28656					0.01904808419612891
IEMKAALNKMR	11	Unmodified	_IEMKAALNKMR_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.8835144042969	3	435.577425	1303.71045	0.2992	0.00013032	0.89381	0.00038932	1.193	0.00051965	435.5777130239397	110.67	0.24092	110.65	110.62	110.86	-0.011299					13	8	2	0	0	0	0.024888	1	13980	13980		3.2113	0	1	32498	+		24756	28165	17063	17101	28657	28657					0.07074023636073434
IEMLLAIEI	9	Unmodified	_IEMLLAIEI_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.8025512695312	2	522.804111	1043.59367	-0.090795	-4.7468E-05	-3.1734	-0.001659	-3.2642	-0.0017065	522.8023658714742	97.073	2.0363	96.912	96.168	98.204	-0.16106					130	47	4	0	0	0	0.20967	1	11988	11988		87.754	2.3948	1	2317900			24757	8409	17064	17102	28658	28658					0.07361608687961052
IEMTIAKGGE	10	Unmodified	_IEMTIAKGGE_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3126831054688	2	524.7708	1047.52705	-0.4777	-0.00025068	-0.18259	-9.5819E-05	-0.66029	-0.0003465	524.7698479877819	75.647	0.60036	75.374	75.06	75.661	-0.27267					31	14	3	0	0	0	0.03519	1	8901	8901		31.53	0	1	278270	+		24758	21973	17065	17103	28659	28659					0.005183731260785862
IEMTSILKIQP	11	Unmodified	_IEMTSILKIQP_					0	0	0			REV__nc|ENSG00000147231|Q6NSI4-3|RADX	REV__nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.8902282714844	3	424.91258	1271.71591	1.577	0.0006701	-1.1601	-0.00049294	0.41694	0.00017716	424.91130562303465	20.34	0.29626	20.409	20.217	20.514	0.068901					9	5	2	0	0	0	0.024727	1	496	496		36.318	19.6	1	18116	+		24759	24540	17066	17104	28660	28660					0.09092025699533224
IEMYTAGAL	9	Unmodified	_IEMYTAGAL_					0	0	0			REV__ENSG00000139344|ENST00000266736|AMDHD1	REV__ENSG00000139344|ENST00000266736|AMDHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2878112792969	2	484.741511	967.468469	-0.17337	-8.4041E-05	3.1197	0.0015123	2.9463	0.0014282	484.74329000346887	42.497	0.37933	42.364	42.149	42.528	-0.1322					21	10	3	0	0	0	0.023181	1	3909	3909		82.305	38.188	1	345790	+		24760	23936	17067	17105	28661	28661					-0.01656683448413787
IEMYTAGAL	9	Unmodified	_IEMYTAGAL_					0	0	0			REV__ENSG00000139344|ENST00000266736|AMDHD1	REV__ENSG00000139344|ENST00000266736|AMDHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2879638671875	2	484.741511	967.468469	-0.40534	-0.00019648	2.3843	0.0011558	1.979	0.00095929	484.74257793900904	42.414	0.61714	42.44	42.024	42.641	0.026016					28	17	3	0	0	0	0.024405	1	3863	3863		44.117	14.275	1	435030	+		24761	23936	17067	17105	28662	28662					-0.01656683448413787
IENAREKIL	9	Unmodified	_IENAREKIL_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.320068359375	2	543.319306	1084.62406	-1.5924	-0.00086516	1.222	0.00066396	-0.37031	-0.00020119	543.3198790554983	64.731	1.2899	64.469	64.083	65.372	-0.2626					71	34	3	0	0	0	0.10174	1	7578	7578		110.12	2.0324	1	10106000			24762	6082	17068	17106	28663	28663					0.08513103397376653
IENLKNPA	8	Unmodified	_IENLKNPA_					0	0	0		ENST00000458479.1_1_21:34101177-34101306:+|nuORF	ENST00000458479.1_1_21:34101177-34101306:+|nuORF	ENST00000458479.1_1_21:34101177-34101306:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.2743225097656	2	449.753267	897.491981	-0.0037713	-1.6961E-06	4.3998	0.0019788	4.396	0.0019771	449.75516805428686	57.084	0.40955	56.86	56.661	57.07	-0.2248					17	10	2	0	0	0	0.027866	1	6187	6187		40.778	0	1	215760			24763	14625	17069	17107	28664	28664					0.039134983804160584
IENTELLSR	9	Unmodified	_IENTELLSR_					0	0	0			REV__nc|ENSG00000124535|Q96S55-3|WRNIP1	REV__nc|ENSG00000124535|Q96S55-3|WRNIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3046875	2	537.793121	1073.57169	-0.17708	-9.5234E-05	1.4722	0.00079172	1.2951	0.00069649	537.7922673649833	69.17	0.33696	68.877	68.713	69.05	-0.29291					11	8	2	0	0	0	0.024427	1	8275	8275		34.173	1.3601	1	196820	+		24764	22770	17070	17108	28665	28665					0.03784520263752711
IENTSLAPED	10	Unmodified	_IENTSLAPED_					0	0	0		nc|ENSG00000189430|O76036-4|NCR1;nc|ENSG00000189430|O76036-5|NCR1;nc|ENSG00000189430|O76036-3|NCR1;nc|ENSG00000189430|O76036-2|NCR1;nc|ENSG00000189430|O76036-6|NCR1;nc|ENSG00000189430|O76036|NCR1;ENSG00000189430|ENST00000291890|NCR1	nc|ENSG00000189430|O76036-4|NCR1	nc|ENSG00000189430|O76036-4|NCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.800537109375	2	544.758943	1087.50333	-0.48112	-0.00026209	3.1797	0.0017321	2.6985	0.0014701	544.7592433248017	45.29	0.75494	45.037	44.468	45.223	-0.25252					28	19	2	0	0	0	0.03519	1	4269	4269		37.812	13.609	1	176090			24765	9812	17071	17109	28666	28666					-0.036917691067628766
IEPCHGYTV	9	Carbamidomethyl (C)	_IEPC(Carbamidomethyl (C))HGYTV_	IEPC(1)HGYTV		IEPC(63)HGYTV		0	1	0			REV__ENSG00000108582|ENST00000225719|CPD	REV__ENSG00000108582|ENST00000225719|CPD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2472534179688	2	538.247492	1074.48043	-1.5867	-0.00085406	-4.4538	-0.0023972	-6.0405	-0.0032513	538.2457913956628	55.469	1.4948	55.567	55.257	56.752	0.098011					95	40	5	0	0	0	0.43973	1	6083	6083		63.306	6.5852	1	10652000	+		24766	21748	17072	17110	28667	28667	278				-0.053830667052125136
IEPCLSLIKPN	11	Unmodified	_IEPCLSLIKPN_					0	0	0			REV__ENST00000523994.1_1_8:37620177-37624049:+|nuORF	REV__ENST00000523994.1_1_8:37620177-37624049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.24700927734375	3	409.565291	1225.67404	0.40831	0.00016723	3.5497	0.0014538	3.958	0.0016211	409.5667515544853	37.321	0.57515	37.258	37.014	37.589	-0.063389					39	15	4	0	0	0	0.024044	1	3071	3071		66.92	0	1	1296100	+		24767	24558	17073	17111	28668	28668					0.07023470011017707
IEPDIEVQL	9	Unmodified	_IEPDIEVQL_					0	0	0			REV__CON__P07744	REV__CON__P07744	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.284423828125	2	528.284597	1054.55464	-0.057071	-3.015E-05	-0.47364	-0.00025022	-0.53071	-0.00028037	528.2843094792337	87.168	2.4173	87.132	85.503	87.921	-0.035355					112	57	4	0	0	0	0.053401	1	10918	10918		127.46	6.8407	1	11322000	+	+	24768	19545	17074	17112	28669	28669					0.029545996579599887
IEPDIEVQL	9	Unmodified	_IEPDIEVQL_					0	0	0			REV__CON__P07744	REV__CON__P07744	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2847290039062	2	528.284597	1054.55464	0.65879	0.00034803	-1.1992	-0.00063351	-0.54039	-0.00028548	528.2839205294782	87.138	1.9313	87.159	85.942	87.873	0.021263					103	45	4	0	0	0	0.42604	1	10915	10915		64.207	2.0999	1	11231000	+	+	24769	19545	17074	17112	28670	28670					0.029545996579599887
IEPKNDNVD	9	Unmodified	_IEPKNDNVD_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2737426757812	2	522.253828	1042.4931	-0.26881	-0.00014039	-1.3825	-0.00072202	-1.6513	-0.00086241	522.2529338073106	90.511	0.79475	90.494	90.235	91.03	-0.016716					37	18	3	0	0	0	0.024495	1	11466	11466		19.997	4.355	1	336200	+		24770	28106	17075	17113	28671	28671					-0.026443320413363836
IEPKNNNQ	8	Unmodified	_IEPKNNNQ_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__nc|ENSG00000152818|P46939-3|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.30572509765625	2	478.743431	955.472308	-0.71805	-0.00034376	0.5272	0.00025239	-0.19084	-9.1365E-05	478.7435554883502	24.29	1.1781	24.243	23.4	24.578	-0.047148					52	26	3	0	0	0	0.027866	1	926	926		37.159	3.6435	1	236530	+		24771	24867;36792	17076	17114	28672	28672					-0.007208776303286868
IEPKNNNQ	8	Unmodified	_IEPKNNNQ_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__nc|ENSG00000152818|P46939-3|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.743431	955.472308	0.14693	7.0343E-05	-0.0214	-1.0245E-05	0.12553	6.0098E-05	478.74318037291414	24.263	0.82441	24.263	23.694	24.518	0	0.010319	-0.00037599	NaN	34.173	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209970	+		24772	24867;36792	17076	17114							-0.007208776303286868
IEPLHLVIKW	10	Unmodified	_IEPLHLVIKW_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	624.8782348632812	2	624.379166	1246.74378	0.40602	0.00025351	1.6131	0.0010072	2.0191	0.0012607	624.3802094423382	105.96	0.29018	105.96	105.78	106.07	-0.0013123					14	9	2	0	0	0	1.1217	1	13547	13547		21.96	1.013	1	177250	+		24773	24763	17077	17115	28673	28673					0.13027716741930817
IEPMTFKKT	9	Unmodified	_IEPMTFKKT_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;CCNB3|p.T485Hfs*37|1|0.3|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant;CCNB3|p.K727Nfs*5|1|0.06|ENSG00000147082|chrX:50310350-50310350|G/-|frameshift_variant;CCNB3|p.F206L|1|0.9|ENSG00000147082|chrX:50308787-50308787|T/A|missense_variant	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.27685546875	2	547.79936	1093.58417	-0.70639	-0.00038696	3.0233	0.0016562	2.3169	0.0012692	547.7991021462839	29.487	0.59589	29.315	28.937	29.533	-0.17258					38	13	4	0	0	0	0.024506	1	1759	1759		16.473	0	1	412320			24774	5929	17078	17116	28674	28674					0.041118404024700794
IEPQILIEI	9	Unmodified	_IEPQILIEI_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.317138671875	2	534.320983	1066.62741	-0.80226	-0.00042866	0.60636	0.00032399	-0.1959	-0.00010467	534.3211505721415	96.377	0.8007	96.377	95.991	96.792	0					50	18	4	0	0	0	0.56934	1	12330	12330		54.776	0	1	1239800	+		24775	24328	17079	17117	28675	28675					0.09676353451391151
IEPSTEGEVI	10	Unmodified	_IEPSTEGEVI_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;LAMB1-ATXN7L1|1|fusion;LAMB1-PUS7|1|fusion;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant	ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2;LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.305419921875	2	537.271687	1072.52882	-0.71605	-0.00038472	-1.009	-0.0005421	-1.725	-0.00092682	537.2705913950524	68.619	0.45393	68.619	68.407	68.861	0					13	11	2	0	0	0	0.03519	1	8270	8270		44.117	4.864	1	240180			24776	1954;8233;17910	17080	17118	28676	28676					-0.0045429458432408865
IEPVYFFPHG	10	Unmodified	_IEPVYFFPHG_					0	0	0			REV__ENST00000478406.5_1_1:227171537-227174435:+|nuORF	REV__ENST00000478406.5_1_1:227171537-227174435:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	603.3009033203125	2	603.303124	1204.5917	-0.54329	-0.00032777	-3.2624	-0.0019682	-3.8057	-0.002296	603.3010122156002	32.662	0.98359	32.425	32.086	33.07	-0.23666					53	23	4	0	0	0	1.0236	1	2281	2281		30.504	2.6214	1	1844200	+		24777	25527	17081	17119	28677	28677					-0.0024168400561848102
IEPYHSDRA	9	Unmodified	_IEPYHSDRA_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2889404296875	2	544.261988	1086.50942	-0.35948	-0.00019565	0.00096014	5.2257E-07	-0.35852	-0.00019513	544.763733463867	47.947	0.84716	47.76	47.239	48.086	-0.18684					45	22	3	0	0	0	0.024541	1	4768	4768		24.203	0	1	452600			24778	7695	17082	17120	28678	28678					-0.030372060845593296
IEQAIYKL	8	Unmodified	_IEQAIYKL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2865295410156	2	489.286943	976.559333	-0.055343	-2.7079E-05	-0.41283	-0.00020199	-0.46818	-0.00022907	489.28663288298486	63.363	1.2931	63.179	62.83	64.124	-0.18386					84	32	4	0	0	0	0.093853	1	7168	7168		162.31	9.6722	1	7704800			24779	8297	17083	17121	28679	28679					0.07011528591374372
IEQAIYKL	8	Unmodified	_IEQAIYKL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2865295410156	2	489.286943	976.559333	0.59109	0.00028921	-0.99	-0.00048439	-0.3989	-0.00019518	489.28636273818836	63.478	1.2323	63.22	62.917	64.15	-0.25824					88	31	4	0	0	0	0.093853	2	7156	7156;7181		162.31	9.6722	1	8215000			24780	8297	17083	17121	28680;28681	28680					0.07011528591374372
IEQATEDFYVK	11	Unmodified	_IEQATEDFYVK_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.8772277832031	3	448.222359	1341.64525	-0.21769	-9.7571E-05	-2.6364	-0.0011817	-2.8541	-0.0012793	448.22151415222606	64.51	0.15726	64.275	64.177	64.334	-0.2345					5	3	2	0	0	0	0.024791	1	7322	7322		27.554	0	1	50169	+		24781	28456	17084	17122	28682	28682					-0.011909760844218908
IEQATIRE	8	Unmodified	_IEQATIRE_					0	0	0			REV__ENST00000460991.1_1_2:85066267-85069119:-|nuORF	REV__ENST00000460991.1_1_2:85066267-85069119:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29327392578125	2	480.261456	958.50836	-0.42606	-0.00020462	0.20482	9.8368E-05	-0.22124	-0.00010625	480.26217661676816	65.183	0.31757	65.183	64.909	65.226	0					12	8	2	0	0	0	0.027866	1	7703	7703		34.173	0	1	134880	+		24782	27887	17085	17123	28683	28683					0.027445795465382616
IEQAVLIDS	9	Unmodified	_IEQAVLIDS_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.3011474609375	2	494.27149	986.528426	-0.2391	-0.00011818	2.7989	0.0013834	2.5598	0.0012652	494.2727441154676	96.39	0.24985	96.233	96.173	96.423	-0.15646					8	5	2	0	0	0	0.024477	1	11910	11910		27.882	6.9353	1	112740	+		24783	26773	17086	17124	28684	28684					0.03462330486490828
IEQIGRKN	8	Unmodified	_IEQIGRKN_					0	0	0		LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant;nc|ENSG00000138709|Q659C4-9|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;nc|ENSG00000138709|Q659C4-2|LARP1B;nc|ENSG00000138709|Q659C4-4|LARP1B	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2771911621094	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	1.0009	1	10009	10009		37.159	0.13063	1	7774800			24784	5271	17087	17125	28685	28685					0.060319920203255606
IEQINGFII	9	Unmodified	_IEQINGFII_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8211669921875	2	523.797675	1045.5808	-0.82895	-0.0004342	4.4846	0.002349	3.6556	0.0019148	523.7998764088709	48.278	0.29306	48.18	47.929	48.222	-0.097553					9	7	2	0	0	0	0.023355	1	4762	4762		65.803	0	1	68637	+		24785	25290	17088	17126	28686	28686					0.05982913620096042
IEQINGFII	9	Unmodified	_IEQINGFII_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.8214111328125	2	523.797675	1045.5808	-1.0609	-0.00055571	-3.0103	-0.0015768	-4.0712	-0.0021325	523.7974634463453	48.504	0.10568	48.228	48.151	48.257	-0.27598					4	2	2	0	0	0	0.023181	1	4797	4797		82.305	0	1	50951	+		24786	25290	17088	17126	28687	28687					0.05982913620096042
IEQLANPK	8	Unmodified	_IEQLANPK_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.8883972167969	2	456.761092	911.507631	0.27889	0.00012738	0.070888	3.2379E-05	0.34977	0.00015976	456.761616194735	37.253	0.83897	37.06	36.812	37.651	-0.193					26	21	2	0	0	0	0.027866	1	3065	3065		79.939	3.0926	1	183210			24787	7151	17089	17127	28688	28688					0.04833784897482474
IEQLANPK	8	Unmodified	_IEQLANPK_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	456.761092	911.507631	0.67451	0.00030809	0.22796	0.00010412	0.90247	0.00041221	456.7609659241457	36.723	0.97977	36.723	36.063	37.042	0	-0.16878	1.8929E-05	NaN	79.939	42	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313980			24788	7151	17089	17127							0.04833784897482474
IEQLRSSV	8	Unmodified	_IEQLRSSV_					0	0	0		CADPS2|p.E308Q|1|0.14|ENSG00000081803|chr7:122621663-122621663|C/G|missense_variant	CADPS2|p.E308Q|1|0.14|ENSG00000081803|chr7:122621663-122621663|C/G|missense_variant	CADPS2|p.E308Q|1|0.14|ENSG00000081803|chr7:122621663-122621663|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.7606506347656	2	466.263999	930.513445	0.0018852	8.79E-07	-3.7759	-0.0017606	-3.774	-0.0017597	466.26228734017724	86.591	2.6263	86.454	84.663	87.289	-0.13734					99	61	3	0	0	0	0.027866	1	10525	10525		26.693	1.1189	1	2085300			24789	208	17090	17128	28689	28689					0.04540883409151775
IEQLVARSN	9	Unmodified	_IEQLVARSN_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000426249.1_1_17:18365525-18365891:+|nuORF;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2880249023438	2	515.288005	1028.56146	-0.85235	-0.00043921	0.39852	0.00020535	-0.45383	-0.00023385	515.288242289824	40.259	1.496	40.029	39.623	41.119	-0.23021					72	39	2	0	0	0	0.40693	1	3466	3466		65.465	3.358	1	18571000			24790	18095	17091	17129	28690	28690					0.04831957329201941
IEQPWSNSV	9	Unmodified	_IEQPWSNSV_					0	0	0			REV__ENST00000421887.2_1_5:174948933-174952897:+|nuORF	REV__ENST00000421887.2_1_5:174948933-174952897:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.282470703125	2	530.258914	1058.50327	-1.3917	-0.00073798	4.4669	0.0023686	3.0751	0.0016306	530.2618836621475	39.707	0.3665	39.595	39.5	39.867	-0.11222					14	9	2	0	0	0	0.022832	1	3458	3458		104.75	19.831	1	132510	+		24791	32192	17092	17130	28691	28691					-0.023637243160919752
IEQRSLALA	9	Unmodified	_IEQRSLALA_					0	0	0			REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7466125488281	2	500.792924	999.571294	0.31102	0.00015576	-0.68968	-0.00034539	-0.37866	-0.00018963	500.7924758736284	53.108	0.68406	52.981	52.753	53.437	-0.12705					26	17	2	0	0	0	0.024427	1	5542	5542		26.693	1.1189	1	2583800	+		24792	20336	17093	17131	28692	28692					0.07149145334551577
IEQRSLALA	9	Unmodified	_IEQRSLALA_					0	0	0			REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7460021972656	2	500.792924	999.571294	0.18843	9.4364E-05	-0.69786	-0.00034949	-0.50943	-0.00025512	500.79246316235356	53.316	0.63406	53.057	52.843	53.477	-0.25838					25	16	2	0	0	0	0.024337	1	5566	5566		41.427	0	1	2555700	+		24793	20336	17093	17131	28693	28693					0.07149145334551577
IEQSPLVML	9	Unmodified	_IEQSPLVML_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2879028320312	2	515.286085	1028.55762	-0.12585	-6.4851E-05	4.0092	0.0020659	3.8834	0.002001	515.2881512719158	24.622	0.65187	24.447	24.169	24.821	-0.17484					33	14	3	0	0	0	0.15029	1	1097	1097		99.375	3.1845	1	1637900			24794	1219	17094	17132	28694	28694					0.04448151511132892
IEQSPLVML	9	Unmodified	_IEQSPLVML_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.286085	1028.55762	-0.81678	-0.00042088	4.0185	0.0020707	3.2017	0.0016498	515.2880054258891	24.795	0.92889	24.795	24.08	25.009	0	0.10431	0.00014178	NaN	99.375	46	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321280			24795	1219	17094	17132							0.04448151511132892
IEQSPLVML	9	Unmodified	_IEQSPLVML_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.286085	1028.55762	-1.2371	-0.00063745	4.5528	0.002346	3.3157	0.0017085	515.2882084898974	24.947	0.93555	24.912	24.057	24.992	-0.034395	0.2221	0.00069237	NaN	99.375	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338120			24796	1219	17094	17132							0.04448151511132892
IEQSPLVML	9	Unmodified	_IEQSPLVML_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.286085	1028.55762	-0.21909	-0.0001129	2.4226	0.0012483	2.2035	0.0011354	515.2870906380004	24.813	0.86655	24.892	24.138	25.005	0.078344	0.2014	-0.0015029	NaN	99.375	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454900			24797	1219	17094	17132							0.04448151511132892
IEQSPLVML	9	Unmodified	_IEQSPLVML_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	515.286085	1028.55762	-0.4203	-0.00021657	4.1772	0.0021525	3.757	0.0019359	515.2883002243813	24.828	0.64648	24.613	24.296	24.943	-0.2151	-0.077414	0.00030538	NaN	99.375	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728000			24798	1219	17094	17132							0.04448151511132892
IEQYIAALP	9	Unmodified	_IEQYIAALP_					0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.744873046875	2	509.2844	1016.55425	-0.54118	-0.00027561	-4.1729	-0.0021252	-4.714	-0.0024008	509.28217777052055	38.991	0.45666	38.991	38.797	39.254	0					34	12	4	0	0	0	0.024323	1	3309	3309		53.351	15.54	1	758630	+		24799	22546	17095	17133	28695	28695					0.04663224728756177
IERARPGA	8	Unmodified	_IERARPGA_					0	0	0			REV__ENST00000540132.5_1_19:49956588-49964081:+|nuORF	REV__ENST00000540132.5_1_19:49956588-49964081:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.25140380859375	2	435.251226	868.487899	-0.19644	-8.55E-05	0.10126	4.4072E-05	-0.095182	-4.1428E-05	435.251208127812	92.044	1.0634	92.036	91.665	92.729	-0.0082855					46	25	2	0	0	0	1.0574	2	11631	11631;11645		24.203	4.8428	1	2000500	+		24800	25389	17096	17134	28696;28697	28696					0.04839453677379879
IERARPGA	8	Unmodified	_IERARPGA_					0	0	0			REV__ENST00000540132.5_1_19:49956588-49964081:+|nuORF	REV__ENST00000540132.5_1_19:49956588-49964081:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2513122558594	2	435.251226	868.487899	-1.5352	-0.00066818	1.42	0.00061805	-0.11518	-5.0134E-05	435.2517614216058	92.184	2.8053	92.041	90.979	93.784	-0.14356					107	65	3	0	0	0	1.0574	1	11312	11312		24.203	3.7209	1	1777900	+		24801	25389	17096	17134	28698	28698					0.04839453677379879
IERAVQSEIFL	11	Unmodified	_IERAVQSEIFL_					0	0	0		ENSG00000183060|ENST00000684762|LYSMD4;nc|ENSG00000183060|Q5XG99-2|LYSMD4	ENSG00000183060|ENST00000684762|LYSMD4	ENSG00000183060|ENST00000684762|LYSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.5779113769531	3	435.578477	1303.7136	0.29994	0.00013065	-1.8588	-0.00080965	-1.5588	-0.000679	435.57752878572217	110.31	0.40344	110.3	110.16	110.56	-0.009491					48	14	4	0	0	0	1.0648	1	13937	13937		21.032	1.4053	1	488450			24802	9193	17097	17135	28699	28699					0.07389313286103061
IERECKEEF	9	Unmodified	_IERECKEEF_					0	0	0		ENSG00000130962|ENST00000378628|PRRG1;nc|ENSG00000130962|O14668-2|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	590.8662719726562	2	591.776613	1181.53867	0.4984	0.00029494	-3.3645	-0.001991	-2.8661	-0.0016961	592.2761430621234	102.37	0.39783	102.37	102.15	102.55	-0.0054474					15	8	2	0	0	0	0.024405	1	13008	13008		44.117	19.598	1	153570			24803	4480	17098	17136	28700	28700					-0.04483429850597531
IEREKELM	8	Unmodified	_IEREKELM_					0	0	0		ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8211669921875	2	524.278792	1046.54303	-0.67625	-0.00035455	-4.0181	-0.0021066	-4.6944	-0.0024612	524.7753330372454	48.062	0.59278	47.964	47.593	48.186	-0.097553					43	15	4	0	0	0	0.027866	1	4762	4762		73.975	24.533	1	1458900			24804	15841	17099	17137	28701	28701					0.021620793629836044
IERELTKL	8	Unmodified	_IERELTKL_					0	0	0			REV__nc|ENSG00000100324|Q15750-2|TAB1	REV__nc|ENSG00000100324|Q15750-2|TAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2763671875	2	501.303124	1000.5917	-0.81064	-0.00040638	-4.2468	-0.0021289	-5.0574	-0.0025353	501.8031547745882	65.171	0.48259	64.916	64.661	65.144	-0.25563					30	11	4	0	0	0	0.027866	1	7392	7392		30.318	0	1	196920	+		24805	21088	17100	17138	28702	28702					0.09142315994370165
IEREWRAWDWW	11	Unmodified	_IEREWRAWDWW_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8037719726562	3	544.928392	1631.76335	-1.0348	-0.00056389	-4.4518	-0.0024259	-5.4866	-0.0029898	544.9259881065994	22.053	0.4332	21.851	21.566	21.999	-0.20199					13	8	2	0	0	0	0.024898	1	696	696		3.026	0	1	15538	+		24806	21761	17101	17139	28703	28703					-0.02726558985250449
IERGEKLSW	9	Unmodified	_IERGEKLSW_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7796020507812	2	559.303655	1116.59276	-0.65668	-0.00036729	-0.011185	-6.2556E-06	-0.66787	-0.00037354	559.3035082058321	60.361	0.89204	60.185	59.667	60.559	-0.1761					37	22	3	0	0	0	0.024541	1	6698	6698		26.693	10.22	1	570800	+		24807	27298	17102	17140	28704	28704					0.03912530363277256
IERGEKLSW	9	Unmodified	_IERGEKLSW_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.303655	1116.59276	-0.31643	-0.00017698	-0.42862	-0.00023973	-0.74506	-0.00041671	559.3033686954194	60.505	0.78659	60.299	59.756	60.543	-0.20599	0.033518	-0.000407	NaN	19.997	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560960	+		24808	27298	17102	17140							0.03912530363277256
IERHAPWV	8	Unmodified	_IERHAPWV_					0	0	0		nc|ENSG00000111670|Q3T906-2|GNPTAB;ENSG00000111670|ENST00000299314|GNPTAB	nc|ENSG00000111670|Q3T906-2|GNPTAB	nc|ENSG00000111670|Q3T906-2|GNPTAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2725830078125	2	504.274701	1006.53485	-0.12124	-6.1136E-05	-4.0273	-0.0020308	-4.1485	-0.002092	504.2725947722618	20.365	0.68546	20.142	19.878	20.564	-0.22344					38	13	4	0	0	0	1.0239	1	528	528		33.516	4.366	1	841620			24809	3133	17103	17141	28705	28705					0.03184313228518931
IERHHLSIS	9	Unmodified	_IERHHLSIS_					0	0	0		ENST00000262293.8_2_17:57262525-57262892:+|nuORF	ENST00000262293.8_2_17:57262525-57262892:+|nuORF	ENST00000262293.8_2_17:57262525-57262892:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3172607421875	2	546.301447	1090.58834	-1.3967	-0.000763	3.3083	0.0018073	1.9116	0.0010443	546.3030268036742	90.208	0.53022	90.208	89.896	90.427	0					30	12	3	0	0	0	0.024487	1	11402	11402		17.365	0.89182	1	723060			24810	11495	17104	17142	28706	28706					0.046670659403844184
IERHIRRRH	9	Unmodified	_IERHIRRRH_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.8902282714844	3	424.921794	1271.74355	-0.54462	-0.00023142	-0.1276	-5.4219E-05	-0.67222	-0.00028564	424.92184083146446	20.504	0.2952	20.4	20.178	20.473	-0.10477					7	5	2	0	0	0	0.024541	1	536	536		25.574	3.7936	1	10167			24811	9690	17105	17143	28707	28707					0.11855154585305172
IERKGPTK	8	Unmodified	_IERKGPTK_					0	0	0			REV__nc|ENSG00000080224|Q9UF33|EPHA6	REV__nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.9007873535156	2	464.782359	927.550165	0.8297	0.00038563	-0.99685	-0.00046332	-0.16715	-7.769E-05	464.7815657561527	20.543	0.29701	20.347	20.187	20.484	-0.19577					7	5	2	0	0	0	0.027866	1	543	543		10.866	0	1	29825	+		24812	20650	17106	17144	28708	28708					0.0834918002572067
IERKKFII	8	Unmodified	_IERKKFII_					0	0	0		nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.8209228515625	2	523.839677	1045.6648	-1.0988	-0.00057559	1.4604	0.00076502	0.36162	0.00018943	523.839993351638	48.585	0.21015	48.309	48.116	48.326	-0.27598					6	5	2	0	0	0	0.027866	1	4786	4786		82.305	18.098	1	133870			24813	18756	17107	17145	28709	28709					0.14379489507678045
IERKKPRNPT	10	Unmodified	_IERKKPRNPT_					0	0	0			REV__ENSG00000149646|ENST00000373973|CNBD2	REV__ENSG00000149646|ENST00000373973|CNBD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8690795898438	2	619.870028	1237.7255	-0.47108	-0.00029201	-0.44611	-0.00027653	-0.91719	-0.00056854	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.1266	1	11845	11845		29.17	0	1	4765600	+		24814	24693	17108	17146	28710	28710					0.11614974819940471
IERLHNLAKQ	10	Unmodified	_IERLHNLAKQ_					0	0	0			REV__nc|ENSG00000198901|O43663-3|PRC1	REV__nc|ENSG00000198901|O43663-3|PRC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3551635742188	2	611.356754	1220.69895	-0.19635	-0.00012004	-1.1472	-0.00070135	-1.3436	-0.00082139	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.1329	1	11402	11402		27.882	1.1893	1	5237500	+		24815	28513	17109	17147	28711	28711					0.09743285928584555
IERLPPSL	8	Unmodified	_IERLPPSL_					0	0	0			REV__nc|ENSG00000160224|O43918-2|AIRE	REV__nc|ENSG00000160224|O43918-2|AIRE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.76080322265625	2	462.779285	923.544017	-0.61051	-0.00028253	-2.5402	-0.0011756	-3.1507	-0.0014581	462.7796429119187	48.991	0.32266	48.711	48.538	48.861	-0.27977					13	8	2	0	0	0	0.027866	1	4888	4888		47.916	0	1	240190	+		24816	25299	17110	17148	28712	28712					0.0791866179419003
IERLVPDTI	9	Unmodified	_IERLVPDTI_					0	0	0			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2744140625	2	528.308406	1054.60226	-0.70583	-0.0003729	-1.4633	-0.00077307	-2.1691	-0.001146	528.3077491788241	47.081	0.50914	47.081	46.852	47.361	0					27	13	3	0	0	0	0.024397	1	4669	4669		39.253	0	1	881370	+		24817	26721	17111	17149	28713	28713					0.07714298648807016
IERMVKQYELY	11	Unmodified	_IERMVKQYELY_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7452697753906	3	491.258638	1470.75409	-0.19118	-9.3921E-05	2.4822	0.0012194	2.291	0.0011255	491.25976107755326	42.962	0.64404	42.724	42.38	43.024	-0.23736					41	16	3	0	0	0	0.024823	1	3868	3868		21.032	2.5012	1	779890	+		24818	23685	17112	17150	28714	28714					0.037539116142170315
IERPIIDDFP	10	Unmodified	_IERPIIDDFP_					0	0	0			REV__nc|ENSG00000153015|Q6UX04-2|CWC27	REV__nc|ENSG00000153015|Q6UX04-2|CWC27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.9031677246094	3	405.552039	1213.63429	0.8358	0.00033896	-2.0193	-0.00081895	-1.1835	-0.00047999	405.5511615073865	22.163	0.70484	21.974	21.531	22.236	-0.18894					23	14	2	0	0	0	0.03519	1	763	763		19.263	0	1	80070	+		24819	24877	17113	17151	28715	28715					0.036016663319287545
IERRPPET	8	Unmodified	_IERRPPET_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7691955566406	2	499.274898	996.535243	-0.04647	-2.3201E-05	-0.1699	-8.4826E-05	-0.21637	-0.00010803	499.27474779403957	20.066	0.87251	19.899	19.423	20.296	-0.16774					36	17	4	0	0	0	0.027866	1	451	451		13.775	0	1	464300			24820	3883	17114	17152	28716	28716					0.03683688157718734
IERVSPAR	8	Unmodified	_IERVSPAR_					0	0	0			REV__nc|ENSG00000148584|Q9NQ94-5|A1CF	REV__nc|ENSG00000148584|Q9NQ94-5|A1CF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.27227783203125	2	464.272158	926.529764	-0.39656	-0.00018411	-0.20097	-9.3307E-05	-0.59754	-0.00027742	464.2720296950699	20.605	1.4905	20.501	20.178	21.668	-0.10477					56	30	4	0	0	0	1.0106	1	544	544		35.618	0	1	765040	+		24821	36772	17115	17153	28717	28717					0.06356009365902082
IERYLIPN	8	Unmodified	_IERYLIPN_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7666320800781	2	509.290017	1016.56548	-0.13395	-6.8221E-05	2.0066	0.001022	1.8727	0.00095374	509.29125609513085	65.869	0.47256	65.596	65.362	65.835	-0.27282					22	12	2	0	0	0	0.027866	1	7819	7819		65.803	0	1	298780			24822	1038	17116	17154	28718	28718					0.057860468229023354
IESFIQSL	8	Unmodified	_IESFIQSL_					0	0	0		GRID2|p.S664F|1|0.24|ENSG00000152208|chr4:93490771-93490771|C/T|missense_variant	GRID2|p.S664F|1|0.24|ENSG00000152208|chr4:93490771-93490771|C/T|missense_variant	GRID2|p.S664F|1|0.24|ENSG00000152208|chr4:93490771-93490771|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.7558898925781	2	468.755475	935.496398	0.11329	5.3107E-05	0.59658	0.00027965	0.70988	0.00033276	468.75562813213844	94.296	1.214	94.302	93.971	95.185	0.0059814					78	28	4	0	0	0	0.91239	1	11916	11916		50.025	0	1	2570500			24823	17696	17117	17155	28719	28719					0.026069628033383196
IESGIGFGL	9	Unmodified	_IESGIGFGL_					0	0	0			REV__ENST00000462639.1_1_X:23803617-23803970:+|nuORF	REV__ENST00000462639.1_1_X:23803617-23803970:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.89654541015625	2	446.742368	891.470183	-0.46446	-0.0002075	-2.2499	-0.0010051	-2.7144	-0.0012126	446.7411164218079	24.677	0.92753	24.677	24.166	25.094	0					49	20	4	0	0	0	0.024412	1	1039	1039		24.203	1.1603	1	714880	+		24824	32907	17118	17156	28720	28720					0.020106936318711632
IESHQTEQF	9	Unmodified	_IESHQTEQF_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.7578125	2	559.759278	1117.504	0.14965	8.3766E-05	-3.4526	-0.0019326	-3.303	-0.0018489	559.757003614254	71.608	0.68591	71.346	71.075	71.761	-0.26199					40	16	3	0	0	0	0.48817	1	8391	8391		60.118	8.7828	1	1145600	+		24825	27033	17119	17157	28721	28721					-0.05004929667029501
IESKKKKV	8	Unmodified	_IESKKKKV_					0	0	0			REV__ENST00000409054.1_1_2:87883318-87883363:+|nuORF	REV__ENST00000409054.1_1_2:87883318-87883363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2923583984375	2	480.316035	958.617516	-0.86106	-0.00041358	2.3682	0.0011375	1.5072	0.00072392	480.31734248246676	55.776	0.2208	55.874	55.744	55.965	0.098015					8	5	2	0	0	0	0.027866	1	6088	6088		20.482	13.288	1	68981	+		24826	31946	17120	17158	28722	28722					0.13655210236663606
IESLPIKP	8	Unmodified	_IESLPIKP_					0	0	0		nc|ENSG00000112280|P20849-3|COL9A1;ENSG00000112280|ENST00000357250|COL9A1	nc|ENSG00000112280|P20849-3|COL9A1	nc|ENSG00000112280|P20849-3|COL9A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7532958984375	2	448.776211	895.537869	-0.29876	-0.00013408	3.2717	0.0014683	2.9729	0.0013342	448.77766753780014	40.07	0.41891	39.958	39.754	40.172	-0.11223					18	10	2	0	0	0	0.027866	1	3479	3479		21.96	0	1	322660			24827	3191	17121	17159	28723	28723					0.08592143562680121
IESLRLFKND	10	Unmodified	_IESLRLFKND_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.7533874511719	3	412.231189	1233.67174	0.7474	0.0003081	-3.0118	-0.0012416	-2.2644	-0.00093346	412.2299049389375	22.668	0.36751	22.466	22.285	22.653	-0.20199					12	7	2	0	0	0	0.03519	1	781	781		18.531	0	1	51305			24828	2520	17122	17160	28724	28724					0.06424757597574171
IESPARSMF	9	Unmodified	_IESPARSMF_					0	0	0			REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2979736328125	2	519.257859	1036.50117	-0.20256	-0.00010518	-4.4369	-0.0023039	-4.6395	-0.0024091	519.2551649087083	60.171	0.82393	59.923	59.686	60.51	-0.24842					36	20	3	0	0	0	0.024447	1	6726	6726		49.442	27.482	1	694290	+		24829	28992	17123	17161	28725	28725					-0.015624763255345897
IESPARSMF	9	Unmodified	_IESPARSMF_					0	0	0			REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.257859	1036.50117	0.20163	0.0001047	-3.464	-0.0017987	-3.2623	-0.001694	519.2556791121201	59.951	0.83336	59.951	59.675	60.509	0	0.025238	3.1424E-05	NaN	64.207	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847330	+		24830	28992	17123	17161							-0.015624763255345897
IESPARSMF	9	Unmodified	_IESPARSMF_					0	0	0			REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.257859	1036.50117	-0.45986	-0.00023878	-2.6775	-0.0013903	-3.1374	-0.0016291	519.2560508096675	60.14	0.78498	59.94	59.538	60.323	-0.20016	0.014577	0.00084816	NaN	64.207	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	941560	+		24831	28992	17123	17161							-0.015624763255345897
IESPARSMF	9	Unmodified	_IESPARSMF_					0	0	0			REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	REV__ENST00000486621.1_1_1:55181548-55183334:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.257859	1036.50117	-1.0864	-0.00056411	-2.1065	-0.0010938	-3.1929	-0.0016579	519.2563567703899	59.842	0.8184	59.92	59.611	60.429	0.078888	-0.0048637	0.0014412	NaN	64.207	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899490	+		24832	28992	17123	17161							-0.015624763255345897
IESPDRET	8	Unmodified	_IESPDRET_					0	0	0		ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75628662109375	2	473.727446	945.44034	0.65423	0.00030993	0.014991	7.1018E-06	0.66922	0.00031703	473.72733362828035	42.928	0.76487	42.959	42.685	43.45	0.030827					32	20	3	0	0	0	0.027866	1	3894	3894		40.778	9.2484	1	508090			24833	4790	17124	17162	28726	28726					-0.03456290104134041
IESPPPPEP	9	Unmodified	_IESPPPPEP_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.3027648925781	2	481.745108	961.475663	-0.20225	-9.7434E-05	3.8893	0.0018736	3.687	0.0017762	481.74682465844955	73.353	0.36765	73.353	73.109	73.477	0					16	9	2	0	0	0	0.024457	1	8934	8934		29.15	21.956	1	365380			24834	7758	17125	17163	28727	28727					-0.006616275763235535
IESSYSPPST	10	Unmodified	_IESSYSPPST_					0	0	0			REV__ENSG00000166959|ENST00000300226|MS4A8	REV__ENSG00000166959|ENST00000300226|MS4A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2482299804688	2	534.248212	1066.48187	-0.21105	-0.00011275	0.20859	0.00011144	-0.0024572	-1.3127E-06	534.2480352533769	63.021	1.3551	62.8	62.518	63.873	-0.22097					62	34	3	0	0	0	1.0393	1	7083	7083		40.778	2.9666	1	5873000	+		24835	26089	17126	17164	28728	28728					-0.048711541354578
IESYQSIYN	9	Unmodified	_IESYQSIYN_					0	0	0			REV__ENSG00000197746|ENST00000394936|PSAP	REV__ENSG00000197746|ENST00000394936|PSAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2849731445312	2	558.764029	1115.5135	-0.27842	-0.00015557	-0.38104	-0.00021291	-0.65947	-0.00036849	558.7628573648628	78.403	0.64507	78.148	77.826	78.471	-0.25471					20	14	2	0	0	0	0.023837	1	9359	9359		54.776	5.5655	1	84334	+		24836	28342	17127	17165	28729	28729					-0.03963161381534519
IETAIHSLI	9	Unmodified	_IETAIHSLI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7900695800781	2	498.78985	995.565146	-0.2221	-0.00011078	0.18001	8.9786E-05	-0.042089	-2.0993E-05	498.7897899982468	70.327	0.98048	70.055	69.447	70.427	-0.27171					75	24	6	0	0	0	0.25032	1	8206	8206		82.305	2.3658	1	7741200			24837	1561	17128	17166	28730	28730					0.0671862710306641
IETEDTGAIN	10	Unmodified	_IETEDTGAIN_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8078002929688	2	531.751118	1061.48768	-1.0814	-0.00057502	-0.94472	-0.00050235	-2.0261	-0.0010774	531.7505130873309	48.361	0.75785	48.361	48.072	48.83	0					35	21	2	0	0	0	0.03519	1	4895	4895		35.152	11.629	1	863590	+		24838	24228	17129	17167	28731	28731					-0.04060055623790504
IETEDTGAIN	10	Unmodified	_IETEDTGAIN_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.751118	1061.48768	-0.89614	-0.00047652	-0.91796	-0.00048813	-1.8141	-0.00096465	531.7505572225966	48.494	0.48379	48.341	48.092	48.575	-0.1528	0.032388	0.00045204	NaN	28.081	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	719040	+		24839	24228	17129	17167							-0.04060055623790504
IETEDTGAIN	10	Unmodified	_IETEDTGAIN_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.751118	1061.48768	-0.59686	-0.00031738	-1.6483	-0.0008765	-2.2452	-0.0011939	531.7500453417874	48.228	0.82639	48.294	48.043	48.87	0.066795	-0.014518	-0.0003247	NaN	28.081	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	723830	+		24840	24228	17129	17167							-0.04060055623790504
IETEDTGAIN	10	Unmodified	_IETEDTGAIN_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.751118	1061.48768	-0.83331	-0.00044312	-3.4808	-0.0018509	-4.3141	-0.002294	531.7494211493977	48.337	0.10676	48.239	48.15	48.257	-0.097553	-0.069765	-0.0022736	NaN	28.081	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84108	+		24841	24228	17129	17167							-0.04060055623790504
IETEDTGAIN	10	Unmodified	_IETEDTGAIN_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.751118	1061.48768	-1.6324	-0.00086804	-3.201	-0.0017021	-4.8334	-0.0025702	532.2507940108802	48.585	0.14079	48.309	48.222	48.362	-0.27598	5.3277E-05	-0.001976	NaN	28.081	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69393	+		24842	24228	17129	17167							-0.04060055623790504
IETFLNHYP	9	Unmodified	_IETFLNHYP_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.3143310546875	2	567.284931	1132.55531	-0.66909	-0.00037957	-2.4131	-0.0013689	-3.0822	-0.0017485	567.2834730906407	45.757	0.65152	45.757	45.548	46.199	0					46	18	3	0	0	0	0.024506	1	4505	4505		23.042	3.939	1	894820			24843	4576	17130	17168	28732	28732					-0.005665609023481011
IETILNTLI	9	Unmodified	_IETILNTLI_					0	0	0		ENSG00000132664|ENST00000377603|POLR3F;ENST00000462997.5_1_20:18448220-18464199:+|nuORF	ENSG00000132664|ENST00000377603|POLR3F	ENSG00000132664|ENST00000377603|POLR3F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2719116210938	2	515.313158	1028.61176	-1.0408	-0.00053632	1.883	0.00097032	0.84222	0.00043401	515.3139004148125	48.749	0.44543	48.648	48.434	48.88	-0.1008					24	11	3	0	0	0	0.024263	1	4890	4890		60.972	18.576	1	323450			24844	4634	17131	17169	28733	28733					0.09860066934356837
IETIYCLLI	9	Unmodified	_IETIYCLLI_					0	0	0			REV__ENST00000503486.6_1_5:178195542-178224582:-|nuORF	REV__ENST00000503486.6_1_5:178195542-178224582:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.332275390625	2	540.804111	1079.59367	-0.4299	-0.00023249	3.4445	0.0018628	3.0146	0.0016303	540.8057746879615	67.492	0.51424	67.492	67.205	67.719	0					25	12	3	0	0	0	0.024262	1	8021	8021		47.916	0	1	362060	+		24845	33956	17132	17170	28734	28734					0.05705608687981112
IETIYCLLI	9	Unmodified	_IETIYCLLI_					0	0	0			REV__ENST00000503486.6_1_5:178195542-178224582:-|nuORF	REV__ENST00000503486.6_1_5:178195542-178224582:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8052978515625	2	540.804111	1079.59367	-0.80283	-0.00043417	4.2318	0.0022886	3.4289	0.0018544	540.8062276067777	60.057	1.7867	59.857	59.393	61.179	-0.20016					100	34	5	0	0	0	0.31247	1	6858	6858		73.975	8.1716	1	6953200	+		24846	33956	17132	17170	28735	28735					0.05705608687981112
IETKREIC	8	Unmodified	_IETKREIC_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.2834777832031	2	496.265684	990.516816	-1.0656	-0.00052883	1.4716	0.00073029	0.40595	0.00020146	496.2660158117289	43.915	0.37437	43.696	43.562	43.936	-0.21938					14	9	2	0	0	0	0.027866	1	4037	4037		30.504	8.5438	1	214690	+		24847	26822	17133	17171	28736	28736					0.02117810191487024
IETLCALAVD	10	Unmodified	_IETLCALAVD_					0	0	0		ENSG00000188778|ENST00000345060|ADRB3	ENSG00000188778|ENST00000345060|ADRB3	ENSG00000188778|ENST00000345060|ADRB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.303466796875	2	524.273175	1046.5318	0.38085	0.00019967	0.18427	9.6608E-05	0.56512	0.00029628	524.2733474941186	88.971	0.29626	88.987	88.795	89.092	0.015907					9	6	2	0	0	0	0.03519	1	11129	11129		34.173	5.023	1	62079			24848	9749	17134	17172	28737	28737					0.01039257268826077
IETLDPALI	9	Unmodified	_IETLDPALI_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.28759765625	2	492.784233	983.553913	0.2085	0.00010275	-4.3334	-0.0021355	-4.1249	-0.0020327	492.781548082386	75.914	0.3383	75.926	75.752	76.09	0.011635					21	8	3	0	0	0	0.023596	1	9271	9271		44.117	0	1	176080			24849	2245;16692	17135	17173	28738	28738					0.06147805008902196
IETLKLVKV	9	Unmodified	_IETLKLVKV_					0	0	0			REV__ENSG00000115827|ENST00000375255|DCAF17	REV__ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.768310546875	2	521.847167	1041.67978	-0.29666	-0.00015481	-1.9195	-0.0010017	-2.2162	-0.0011565	521.8458431301311	55.931	0.54948	55.775	55.517	56.067	-0.15601					19	14	2	0	0	0	0.024495	1	6153	6153		26.693	0	1	327230	+		24850	22233	17136	17174	28739	28739					0.16060936584972296
IETTKLASLVF	11	Unmodified	_IETTKLASLVF_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2;REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3511962890625	2	611.358096	1220.70164	-1.2666	-0.00077434	-2.1002	-0.001284	-3.3668	-0.0020583	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	0.99553	1	11676	11676		37.812	1.3648	1	3820300	+		24851	26561;34380	17137	17175	28740	28740					0.10011696542892423
IETTKLASLVF	11	Unmodified	_IETTKLASLVF_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2;REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3564453125	2	611.358096	1220.70164	-0.81331	-0.00049722	-2.409	-0.0014728	-3.2224	-0.00197	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.0119	1	12032	12032		34.173	3.8548	1	11166000	+		24852	26561;34380	17137	17175	28741	28741					0.10011696542892423
IETTKLASLVF	11	Unmodified	_IETTKLASLVF_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2;REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3561401367188	2	611.358096	1220.70164	0.14541	8.89E-05	-3.232	-0.0019759	-3.0866	-0.001887	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.0292	1	11662	11662		30.318	1.1682	1	13233000	+		24853	26561;34380	17137	17175	28742	28742					0.10011696542892423
IETVVPQSP	9	Unmodified	_IETVVPQSP_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2662353515625	2	485.266207	968.517862	0.15101	7.328E-05	-0.41639	-0.00020206	-0.26538	-0.00012878	485.2659451555265	67.803	1.3091	67.803	67.408	68.717	0					97	33	4	0	0	0	0.19099	1	8122	8122		90.37	2.6734	1	14818000	+		24854	24939	17138	17176	28743	28743					0.032343478320512986
IETVVPQSP	9	Unmodified	_IETVVPQSP_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.26617431640625	2	485.266207	968.517862	-0.071949	-3.4914E-05	-0.13936	-6.7627E-05	-0.21131	-0.00010254	485.2660903477195	67.889	1.1444	67.908	67.466	68.61	0.018921					93	29	4	0	0	0	0.53979	1	8065	8065		56.721	3.7844	1	14393000	+		24855	24939	17138	17176	28744	28744					0.032343478320512986
IEVAILKAE	9	Unmodified	_IEVAILKAE_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.76629638671875	2	493.30005	984.585547	-0.47927	-0.00023642	-3.6786	-0.0018146	-4.1578	-0.0020511	493.29718975886016	32.319	0.60556	32.331	32.063	32.669	0.011799					24	15	2	0	0	0	0.024506	1	2260	2260		16.473	4.2663	1	61335	+		24856	26930	17139	17177	28745	28745					0.09263797762866943
IEVCDLTKV	9	Unmodified	_IEVCDLTKV_					0	0	0		nc|ENSG00000125149|Q9BSU1-2|PHAF1;ENST00000569626.1_1_16:67154016-67168169:+|nuORF;ENST00000569683.5_1_16:67144033-67168649:+|nuORF;ENSG00000125149|ENST00000219139|PHAF1	nc|ENSG00000125149|Q9BSU1-2|PHAF1	nc|ENSG00000125149|Q9BSU1-2|PHAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8183898925781	2	510.275718	1018.53688	-0.48197	-0.00024594	0.61902	0.00031587	0.13705	6.9933E-05	510.27595438959946	74.579	1.3744	74.588	74.095	75.469	0.0096512					59	33	2	0	0	0	0.024313	1	9117	9117		69.628	30.821	1	234270			24857	4088	17140	17178	28746	28746					0.028355611314509588
IEVCKIRSL	9	Unmodified	_IEVCKIRSL_					0	0	0			REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.8118286132812	2	530.812802	1059.61105	-0.50083	-0.00026584	-4.0755	-0.0021633	-4.5763	-0.0024292	530.8107923333289	61.424	0.9903	61.424	60.768	61.758	0					27	13	3	0	0	0	0.28753	1	7121	7121		77.318	11.852	1	1890700	+		24858	22053	17141	17179	28747	28747					0.08362949013621801
IEVCKIRSL	9	Unmodified	_IEVCKIRSL_					0	0	0			REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	530.812802	1059.61105	-0.50083	-0.00026584	-4.0755	-0.0021633	-4.5763	-0.0024292	530.8107923333289	61.424	0.9903	61.424	60.768	61.758	0	-0.01207	-0.00075268	NaN	77.318	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1890700	+		24859	22053	17141	17179							0.08362949013621801
IEVCKIRSL	9	Unmodified	_IEVCKIRSL_					0	0	0			REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	530.812802	1059.61105	0.0027698	1.4702E-06	-5.9096	-0.0031369	-5.9069	-0.0031354	530.8091803511924	61.74	0.75372	61.513	61.261	62.015	-0.22663	0.07681	-0.0026998	NaN	77.318	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1876600	+		24860	22053	17141	17179							0.08362949013621801
IEVKLGKIE	9	Unmodified	_IEVKLGKIE_					0	0	0			REV__ENSG00000123908|ENST00000220592|AGO2	REV__ENSG00000123908|ENST00000220592|AGO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3114013671875	2	514.82115	1027.62775	0.52888	0.00027228	-0.85892	-0.00044219	-0.33004	-0.00016991	514.8193813973046	18.798	0.19786	18.642	18.495	18.693	-0.15637					5	3	2	0	0	0	0.024541	1	330	330		12.207	0	1	8231.8	+		24861	22719	17142	17180	28748	28748					0.11503773171261855
IEVKLSLVT	9	Unmodified	_IEVKLSLVT_					0	0	0			REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF	REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2869873046875	2	501.3157	1000.61685	0.54046	0.00027094	-1.6012	-0.0008027	-1.0607	-0.00053176	501.31459076811285	62.826	0.44721	62.88	62.679	63.126	0.054104					17	10	2	0	0	0	0.024389	1	7233	7233		35.152	4.8343	1	113650	+		24862	35619	17143	17181	28749	28749					0.1165637079697035
IEVNSAATNT	10	Unmodified	_IEVNSAATNT_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8106384277344	2	510.253828	1018.4931	-0.63224	-0.0003226	-0.51634	-0.00026346	-1.1486	-0.00058607	510.25338313799165	48.612	1.1098	48.612	48.14	49.249	0					72	31	3	0	0	0	0.03519	1	5044	5044		29.17	10.846	1	1906400	+		24863	27387	17144	17182	28750	28750					-0.015403320413270194
IEVNSAATNT	10	Unmodified	_IEVNSAATNT_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8103942871094	2	510.253828	1018.4931	-0.56295	-0.00028725	-0.43053	-0.00021968	-0.99348	-0.00050693	510.25339545950936	48.462	1.0458	48.529	48.079	49.125	0.066795					75	28	4	0	0	0	0.03519	1	4962	4962		36.447	5.9431	1	1646200	+		24864	27387	17144	17182	28751	28751					-0.015403320413270194
IEVPLRPHRPS	11	Unmodified	_IEVPLRPHRPS_					0	0	0			REV__ENST00000418724.1_1_6:33282259-33282403:-|nuORF	REV__ENST00000418724.1_1_6:33282259-33282403:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2664794921875	3	434.254328	1299.74115	-0.028014	-1.2165E-05	0.48616	0.00021112	0.45815	0.00019895	434.2544994384897	24.51	0.29914	24.335	24.169	24.468	-0.17484					11	6	2	0	0	0	0.024734	1	1067	1067		36.528	13.15	1	99394	+		24865	32125	17145	17183	28752	28752					0.10327261336988158
IEVPVGLLL	9	Unmodified	_IEVPVGLLL_					0	0	0			REV__PCDHGA4|p.L54P|1|0.07|ENSG00000262576|chr5:141355268-141355268|T/C|missense_variant	REV__PCDHGA4|p.L54P|1|0.07|ENSG00000262576|chr5:141355268-141355268|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.8075866699219	2	476.807511	951.600469	0.3322	0.0001584	0.30513	0.00014549	0.63734	0.00030389	476.80739076683943	102.69	0.64731	102.69	102.32	102.97	0.0054169					27	15	3	0	0	0	0.75282	2	13103	13103;13115		42.474	3.0119	1	396350	+		24866	37361	17146	17184	28753;28754	28753					0.12273289630866202
IEVQRESL	8	Unmodified	_IEVQRESL_					0	0	0		ENSG00000183011|ENST00000575771|NAA38;nc|ENSG00000183011|Q9BRA0-2|NAA38	ENSG00000183011|ENST00000575771|NAA38	ENSG00000183011|ENST00000575771|NAA38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2548522949219	2	487.269281	972.52401	-0.11872	-5.785E-05	-0.39068	-0.00019037	-0.5094	-0.00024822	487.2688975028497	64.518	0.4877	64.518	64.275	64.763	0					20	12	2	0	0	0	0.027866	1	7622	7622		85.359	21.152	1	264710			24867	9187	17147	17185	28755	28755					0.03664866063570571
IEVSGGLQMD	10	Unmodified	_IEVSGGLQMD_					0	0	0			REV__ENSG00000086102|ENST00000379540|NFX1	REV__ENSG00000086102|ENST00000379540|NFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8211669921875	2	524.752607	1047.49066	-0.76414	-0.00040098	-1.6378	-0.00085942	-2.4019	-0.0012604	524.751837804685	48.159	0.51712	48.061	47.705	48.222	-0.097553					18	13	2	0	0	0	0.03519	1	4762	4762		71.877	17.101	1	257680	+		24868	20767	17148	17186	28756	28756					-0.031185037706109142
IEVSRGTPL	9	Unmodified	_IEVSRGTPL_					0	0	0			REV__ENSG00000173627|ENST00000308641|APOBEC4	REV__ENSG00000173627|ENST00000308641|APOBEC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2799987792969	2	486.279649	970.544745	-0.91922	-0.000447	0.20239	9.8418E-05	-0.71683	-0.00034858	486.2797419290966	50.659	1.1613	50.74	50.41	51.571	0.08099					92	32	4	0	0	0	0.16468	1	5234	5234		96.19	0.37527	1	24648000	+		24869	26793	17149	17187	28757	28757					0.05829456443257186
IEWAPNGCV	9	Unmodified	_IEWAPNGCV_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7657470703125	2	494.731477	987.448402	-0.26498	-0.00013109	-3.6696	-0.0018155	-3.9346	-0.0019466	494.7294203319859	41.928	0.58327	41.796	41.565	42.149	-0.13219					42	16	4	0	0	0	0.024477	1	3850	3850		35.618	11.416	1	615070			24870	3535	17150	17188	28758	28758					-0.04582434388362344
IEWAPNGCV	9	Unmodified	_IEWAPNGCV_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.731477	987.448402	-0.033577	-1.6612E-05	-3.9513	-0.0019548	-3.9849	-0.0019714	494.7292503449426	41.85	0.54811	41.873	41.67	42.218	0.023006	0.055418	0.00015612	NaN	53.351	45	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531120			24871	3535	17150	17188							-0.04582434388362344
IEWLQPQRE	9	Unmodified	_IEWLQPQRE_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.87554931640625	3	400.212017	1197.61422	0.18263	7.3089E-05	2.9974	0.0011996	3.18	0.0012727	400.54764076079096	37.591	0.57834	37.371	37.037	37.615	-0.2195					17	14	2	0	0	0	0.024445	1	3011	3011		19.263	0	1	132030			24872	3871	17151	17189	28759	28759					0.023319153920056124
IEWSFMGPNER	11	Unmodified	_IEWSFMGPNER_					0	0	0			REV__nc|ENSG00000135903|P23760|PAX3;REV__ENSG00000009709|ENST00000420770|PAX7	REV__nc|ENSG00000135903|P23760|PAX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.23297119140625	3	455.88005	1364.61832	-0.63992	-0.00029173	4.0618	0.0018517	3.4219	0.00156	456.2165749193788	29.59	0.64403	29.345	28.967	29.611	-0.24523					31	14	3	0	0	0	0.024742	1	1838	1838		25.892	9.3619	1	99499	+		24873	23591;19894	17152	17190	28760	28760					-0.04940363176615392
IEWVIDPVI	9	Unmodified	_IEWVIDPVI_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.2477416992188	2	542.307875	1082.6012	-0.54792	-0.00029714	2.9538	0.0016019	2.4059	0.0013047	542.309611654552	89.778	0.51596	89.64	89.402	89.918	-0.13761					16	11	2	0	0	0	0.024381	1	10977	10977		45.952	11.779	1	67029	+		24874	28493	17153	17191	28761	28761					0.06320084279900584
IEYAKRHAD	9	Unmodified	_IEYAKRHAD_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3143920898438	2	551.78563	1101.55671	-0.19525	-0.00010774	-3.0494	-0.0016826	-3.2447	-0.0017904	551.7837738790929	73.011	0.78922	72.746	72.428	73.217	-0.26479					37	18	3	0	0	0	0.024447	1	8547	8547		32.812	10.853	1	326760	+		24875	22237	17154	17192	28762	28762					0.00999073186426358
IEYAKRHAD	9	Unmodified	_IEYAKRHAD_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.78563	1101.55671	-0.22394	-0.00012357	-2.7903	-0.0015396	-3.0142	-0.0016632	551.7839174486976	72.663	0.81328	72.663	72.333	73.146	0	-0.035713	0.00017605	NaN	39.253	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467630	+		24876	22237	17154	17192							0.00999073186426358
IEYAKRHAD	9	Unmodified	_IEYAKRHAD_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.78563	1101.55671	-0.078939	-4.3557E-05	-2.8678	-0.0015824	-2.9467	-0.001626	551.7839170008149	72.996	0.84969	72.715	72.344	73.194	-0.28124	0.016467	9.0503E-05	NaN	39.253	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441960	+		24877	22237	17154	17192							0.00999073186426358
IEYAKRHAD	9	Unmodified	_IEYAKRHAD_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.78563	1101.55671	0.026907	1.4847E-05	-3.3542	-0.0018508	-3.3273	-0.001836	551.7837114048921	72.677	1.0308	72.687	72.371	73.402	0.0097275	-0.011316	-0.00044633	NaN	39.253	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414620	+		24878	22237	17154	17192							0.00999073186426358
IEYATLELL	9	Unmodified	_IEYATLELL_					0	0	0			REV__ENSG00000184967|ENST00000330579|NOC4L	REV__ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7973022460938	2	532.79734	1063.58013	-0.039993	-2.1308E-05	-0.30371	-0.00016182	-0.3437	-0.00018312	532.7970772121272	90.793	1.5466	90.805	90.492	92.039	0.011276					103	36	5	0	0	0	0.074956	2	11406	11406;11442		119.56	4.0978	1	9257100	+		24879	27714	17155	17193	28763;28764	28763					0.05088074180366675
IEYIGAKSAV	10	Unmodified	_IEYIGAKSAV_					0	0	0			REV__ENSG00000107719|ENST00000263563|PALD1	REV__ENSG00000107719|ENST00000263563|PALD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7670288085938	2	525.795132	1049.57571	-0.49424	-0.00025987	4.2176	0.0022176	3.7234	0.0019577	525.7972044778	31.197	0.66098	31.012	30.66	31.321	-0.18503					29	16	3	0	0	0	0.03519	1	2029	2029		42.396	15.6	1	911510	+		24880	21679	17156	17194	28765	28765					0.05290609757457787
IEYIPYYY	8	Unmodified	_IEYIPYYY_					0	0	0			REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2257690429688	2	562.270958	1122.52736	0.27273	0.00015335	-2.804	-0.0015766	-2.5313	-0.0014233	562.7701564850637	56.769	0.34274	56.566	56.404	56.747	-0.20208					11	8	2	0	0	0	0.027866	1	6169	6169		86.935	18.148	1	105550	+		24881	26085	17157	17195	28766	28766					-0.028998838824236373
IEYLRPIF	8	Unmodified	_IEYLRPIF_					0	0	0			REV__ENSG00000163116|ENST00000295268|STPG2	REV__ENSG00000163116|ENST00000295268|STPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.7662963867188	2	525.80276	1049.59097	-0.67716	-0.00035605	-2.5949	-0.0013644	-3.272	-0.0017204	525.801189665691	57.827	0.58729	57.827	57.641	58.228	0					25	15	2	0	0	0	0.027866	1	6569	6569		13.775	6.085	1	1675400	+		24882	25536	17158	17196	28767	28767					0.06815521345311026
IEYMDQGPW	9	Unmodified	_IEYMDQGPW_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2677612304688	2	569.747324	1137.4801	0.071227	4.0581E-05	2.8278	0.0016111	2.899	0.0016517	569.7490972262784	78.346	0.64377	78.19	77.914	78.557	-0.15591					34	14	4	0	0	0	0.024427	1	9368	9368		34.173	8.7224	1	412950			24883	858	17159	17197	28768	28768					-0.08314486425069845
IEYMDQGPW	9	Unmodified	_IEYMDQGPW_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.747324	1137.4801	-0.84633	-0.00048219	3.6262	0.002066	2.7798	0.0015838	569.7494070790545	78.249	0.74029	78.249	78.001	78.741	0	0.023916	0.00024448	NaN	34.173	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428970			24884	858	17159	17197							-0.08314486425069845
IEYMDQGPW	9	Unmodified	_IEYMDQGPW_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.747324	1137.4801	0.56111	0.00031969	2.1048	0.0011992	2.6659	0.0015189	569.7485509228715	78.404	0.78262	78.212	77.933	78.716	-0.1921	-0.01294	-0.0014891	NaN	34.173	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400940			24885	858	17159	17197							-0.08314486425069845
IEYMDQGPW	9	Unmodified	_IEYMDQGPW_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.747324	1137.4801	-1.0103	-0.00057559	3.7478	0.0021353	2.7375	0.0015597	569.7494403411908	78.238	0.86804	78.254	77.989	78.857	0.015907	0.029047	0.00038306	NaN	34.173	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461640			24886	858	17159	17197							-0.08314486425069845
IEYMDQGPW	9	Unmodified	_IEYMDQGPW_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	569.747324	1137.4801	-0.042995	-2.4496E-05	3.5379	0.0020157	3.4949	0.0019912	569.7491826313917	78.526	0.55899	78.271	77.955	78.514	-0.25471	0.046066	0.00014393	NaN	34.173	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289500			24887	858	17159	17197							-0.08314486425069845
IEYRHLIK	8	Unmodified	_IEYRHLIK_					0	0	0			REV__ENSG00000101220|ENST00000379772|ADISSP	REV__ENSG00000101220|ENST00000379772|ADISSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3168334960938	2	536.319109	1070.62366	-1.5308	-0.00082098	-1.2456	-0.00066805	-2.7764	-0.001489	536.3178948393053	21.06	1.0791	20.847	20.525	21.604	-0.2128					30	21	3	0	0	0	0.96719	1	599	599		42.474	6.8562	1	634010	+		24888	21204	17160	17198	28769	28769					0.09117728468186215
IEYVAMAPW	9	Unmodified	_IEYVAMAPW_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;SZT2|p.S1932Rfs*57|1|0.11|ENSG00000198198|chr1:43435262-43435262|T/-|frameshift_variant;SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant;nc|ENSG00000198198|Q5T011-4|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7383422851562	2	540.265153	1078.51575	-0.1032	-5.5754E-05	-1.7818	-0.00096266	-1.885	-0.0010184	540.7651446450038	36.92	0.23268	36.727	36.618	36.851	-0.193					9	5	2	0	0	0	0.024466	1	2922	2922		25.45	0	1	139770			24889	10106	17161	17199	28770	28770					-0.02036404177397344
IFAELFQLP	9	Unmodified	_IFAELFQLP_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7916259765625	2	539.302593	1076.59063	-0.27386	-0.00014769	3.1406	0.0016937	2.8668	0.001546	539.3042633998476	73.106	0.534	72.828	72.509	73.043	-0.27813					22	12	2	0	0	0	0.024405	1	8894	8894		44.117	0	1	1101400			24890	5071	17162	17200	28771	28771					0.0554010162547911
IFALKEIQL	9	Unmodified	_IFALKEIQL_					0	0	0		ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16;ENST00000462483.1_1_X:47087946-47088164:+|nuORF;ENST00000428400.5_1_X:47086613-47088270:+|nuORF	ENSG00000102225|ENST00000357227|CDK16	ENSG00000102225|ENST00000357227|CDK16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7494506835938	2	537.831517	1073.64848	-0.64301	-0.00034583	-3.3368	-0.0017946	-3.9798	-0.0021404	537.8317072187782	75.993	0.50883	75.818	75.622	76.131	-0.17548					21	12	2	0	0	0	0.024447	1	9023	9023		49.442	12.282	1	140250			24891	2393	17163	17201	28772	28772					0.11460363550895636
IFALLAGKPV	10	Unmodified	_IFALLAGKPV_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7991943359375	2	514.828778	1027.643	-0.54848	-0.00028237	1.5826	0.00081478	1.0342	0.00053241	514.8293200015424	45.337	0.16901	45.237	45.154	45.323	-0.099445					6	4	2	0	0	0	0.03519	1	4295	4295		45.952	13.997	1	87531			24892	3057	17164	17202	28773	28773					0.13028684759092357
IFASFIFI	8	Unmodified	_IFASFIFI_					0	0	0			REV__nc|ENSG00000213439|P0C628|OR5AC1	REV__nc|ENSG00000213439|P0C628|OR5AC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27838134765625	2	479.275847	956.537141	0.70366	0.00033725	3.7752	0.0018093	4.4788	0.0021466	479.27737502520233	96.231	2.3544	96.108	95.378	97.732	-0.12305					131	53	5	0	0	0	1.0133	1	11952	11952		35.201	0	1	1695100	+		24893	37127	17165	17203	28774	28774					0.05713348913616301
IFCFGWYSV	9	Unmodified	_IFCFGWYSV_					0	0	0		nc|ENSG00000172197|Q6ZNC8-3|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7826538085938	2	561.259871	1120.50519	-0.71129	-0.00039922	1.6019	0.00089911	0.89065	0.00049989	561.2607008958717	65.192	0.52035	64.938	64.544	65.064	-0.25392					19	12	2	0	0	0	0.024535	1	7384	7384		25.45	0	1	235400			24894	8253	17166	17204	28775	28775					-0.05024386831837546
IFDEKNRASQ	10	Unmodified	_IFDEKNRASQ_					0	0	0		ZNF318|p.S879F|1|0.33|ENSG00000171467|chr6:43354698-43354698|G/A|missense_variant	ZNF318|p.S879F|1|0.33|ENSG00000171467|chr6:43354698-43354698|G/A|missense_variant	ZNF318|p.S879F|1|0.33|ENSG00000171467|chr6:43354698-43354698|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2071228027344	3	403.207043	1206.5993	1.7549	0.00070757	-1.7592	-0.00070931	-0.004315	-1.7399E-06	403.2063348126522	35.06	1.1418	35.104	34.756	35.898	0.044056					86	29	5	0	0	0	0.99657	1	2621	2621		46.457	3.5925	1	7299400			24895	38184	17167	17205	28776	28776					0.0042642352398161165
IFDELLFDV	9	Unmodified	_IFDELLFDV_					0	0	0			REV__ENSG00000180269|ENST00000570682|GPR139	REV__ENSG00000180269|ENST00000570682|GPR139	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.7891235351562	2	555.789515	1109.56448	-0.20189	-0.00011221	-0.22147	-0.00012309	-0.42336	-0.0002353	555.789441878506	105.61	0.37418	105.6	105.4	105.78	-0.0013123					23	13	2	0	0	0	0.72875	1	13511	13511		44.117	1.7207	1	193430	+		24896	27327	17168	17206	28777	28777					0.014077876633336928
IFDELLFDV	9	Unmodified	_IFDELLFDV_					0	0	0			REV__ENSG00000180269|ENST00000570682|GPR139	REV__ENSG00000180269|ENST00000570682|GPR139	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.7890014648438	2	555.789515	1109.56448	0.002902	1.6129E-06	-0.17206	-9.5632E-05	-0.16916	-9.4019E-05	555.7893709768459	105.6	0.48909	105.48	105.28	105.77	-0.12444					29	14	3	0	0	0	0.80658	1	13160	13160		38.806	0.99462	1	160350	+		24897	27327	17168	17206	28778	28778					0.014077876633336928
IFDEVSLCISL	11	Unmodified	_IFDEVSLCISL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|230|1|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|230|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.5502624511719	3	413.549418	1237.62643	-0.49749	-0.00020574	2.9811	0.0012328	2.4836	0.0010271	413.550692351935	29.631	1.5607	29.631	29.073	30.634	0					57	38	2	0	0	0	0.96309	1	1819	1819		45.022	1.3714	1	5348700	+		24898	36269	17169	17207	28779	28779					0.01711771020177366
IFDPFLTPL	9	Unmodified	_IFDPFLTPL_					0	0	0		nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7985229492188	2	531.797143	1061.57973	-0.0019844	-1.0553E-06	3.6787	0.0019563	3.6767	0.0019553	531.7985437614299	101.61	1.993	101.61	100.76	102.76	-0.0054398					65	45	3	0	0	0	0.62163	1	12973	12973		51.335	3.4199	1	367810			24899	6445	17170	17208	28780	28780					0.05140699251182923
IFDWLLLV	8	Unmodified	_IFDWLLLV_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF;ENST00000487188.1_1_1:12371595-12395946:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8035888671875	2	509.802229	1017.5899	0.28678	0.0001462	2.5802	0.0013154	2.8669	0.0014616	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.95417	1	10564	10564		44.531	0	1	3746700			24900	1119	17171	17209	28781	28781					0.08181306976439373
IFEAIFLNI	9	Unmodified	_IFEAIFLNI_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7919311523438	2	540.310418	1078.60628	-0.72965	-0.00039424	-0.49561	-0.00026778	-1.2253	-0.00066202	540.309787598959	73.084	0.78075	73.094	72.777	73.558	0.0096512					53	19	4	0	0	0	0.024381	1	8802	8802		37.159	0	1	1836300	+		24901	22323	17172	17210	28782	28782					0.07012388142516102
IFEAIFLNI	9	Unmodified	_IFEAIFLNI_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.310418	1078.60628	-0.97307	-0.00052576	0.050427	2.7246E-05	-0.92265	-0.00049852	540.3101533834814	73.044	0.69479	73.044	72.782	73.477	0	-0.039703	0.00030133	NaN	76.774	54	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1752200	+		24902	22323	17172	17210							0.07012388142516102
IFEDGPYEV	9	Unmodified	_IFEDGPYEV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8001708984375	2	534.747847	1067.48114	-0.70393	-0.00037643	-3.1658	-0.0016929	-3.8697	-0.0020693	534.7459989013495	56.734	0.8506	56.832	56.581	57.432	0.097893					35	23	2	0	0	0	0.024457	1	6331	6331		37.159	15.199	1	952320			24903	371	17173	17211	28783	28783					-0.049899487845323165
IFEDGPYEV	9	Unmodified	_IFEDGPYEV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.747847	1067.48114	-0.46882	-0.0002507	-3.3764	-0.0018055	-3.8452	-0.0020562	534.7456952454254	57.059	0.59893	56.895	56.641	57.24	-0.16431	0.01009	-0.00023103	NaN	21.96	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	859130			24904	371	17173	17211							-0.049899487845323165
IFEESHVPVI	10	Unmodified	_IFEESHVPVI_					0	0	0		ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	584.8383178710938	2	585.313689	1168.61282	-1.6096	-0.00094212	-2.4559	-0.0014374	-4.0655	-0.0023796	585.3123042339848	53.189	0.44484	53.042	52.758	53.203	-0.14723					21	11	2	0	0	0	0.03519	1	5669	5669		45.952	6.6991	1	281460			24905	1703	17174	17212	28784	28784					0.03526281303243195
IFEGLVKQI	9	Unmodified	_IFEGLVKQI_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.8157958984375	2	523.815867	1045.61718	-0.53193	-0.00027863	-1.0887	-0.00057029	-1.6206	-0.00084892	523.8149029080422	74.444	1.2884	74.454	74.18	75.469	0.0096512					57	31	4	0	0	0	0.15366	1	9062	9062		98.629	5.4861	1	2910800			24906	5881	17175	17213	28785	28785					0.0961979051680828
IFEIFQKL	8	Unmodified	_IFEIFQKL_					0	0	0		EIF4A2|p.Y198F|1|0.1|ENSG00000156976|chr3:186786239-186786239|A/T|missense_variant	EIF4A2|p.Y198F|1|0.1|ENSG00000156976|chr3:186786239-186786239|A/T|missense_variant	EIF4A2|p.Y198F|1|0.1|ENSG00000156976|chr3:186786239-186786239|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.764404296875	2	519.305136	1036.59572	-0.83195	-0.00043203	-2.9543	-0.0015342	-3.7863	-0.0019662	519.3035357599007	84.292	0.63554	84.318	83.945	84.58	0.02655					36	14	4	0	0	0	0.027866	1	10424	10424		47.916	18.766	1	675460			24907	694	17176	17214	28786	28786					0.07888405488097305
IFEPLSRSL	9	Unmodified	_IFEPLSRSL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3030395507812	2	531.303124	1060.5917	-0.6167	-0.00032766	0.28191	0.00014978	-0.33479	-0.00017787	531.3030501232815	73.693	1.4545	73.703	73.479	74.933	0.0096512					48	34	2	0	0	0	0.4752	1	8947	8947		60.972	0	1	2355200			24908	3893	17177	17215	28787	28787					0.06382315994369492
IFEQLPFQL	9	Unmodified	_IFEQLPFQL_					0	0	0			REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3092041015625	2	567.813325	1133.6121	-0.73961	-0.00041996	-3.8697	-0.0021973	-4.6093	-0.0026172	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.17822	1	8388	8388		93.195	2.8256	1	14091000	+		24909	24263	17178	17216	28788	28788					0.050634866541713563
IFEQRLFP	8	Unmodified	_IFEQRLFP_					0	0	0			REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.307861328125	2	525.292559	1048.57057	-0.029477	-1.5484E-05	1.2103	0.00063578	1.1809	0.00062029	525.2932019621717	74.92	0.40803	74.644	74.438	74.846	-0.27573					15	9	2	0	0	0	0.027866	1	8864	8864		57.811	18.79	1	98143	+		24910	19661	17179	17217	28789	28789					0.04822350685503807
IFEQRLFP	8	Unmodified	_IFEQRLFP_					0	0	0			REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.292559	1048.57057	-0.039117	-2.0548E-05	1.1849	0.00062241	1.1458	0.00060186	525.2929630084928	74.87	0.37048	74.606	74.404	74.774	-0.26326	0.04519	-0.00010271	NaN	57.811	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81930	+		24911	19661	17179	17217							0.04822350685503807
IFEQRLFP	8	Unmodified	_IFEQRLFP_					0	0	0			REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	REV__ENST00000484427.5_1_20:47835892-47850293:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.292559	1048.57057	0.53876	0.00028301	1.5168	0.00079678	2.0556	0.0010798	525.7947408207776	74.616	0.41566	74.433	74.351	74.767	-0.18279	-0.12817	0.00024603	NaN	57.811	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104890	+		24912	19661	17179	17217							0.04822350685503807
IFESLRLLE	9	Unmodified	_IFESLRLLE_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2792358398438	2	560.324057	1118.63356	0.28486	0.00015961	4.1287	0.0023134	4.4136	0.002473	560.3260128832292	84.567	0.38196	84.429	84.194	84.576	-0.13789					18	8	3	0	0	0	0.024506	1	10237	10237		30.504	0	1	133840	+		24913	25826	17180	17218	28790	28790					0.07898871682914432
IFETFSLD	8	Unmodified	_IFETFSLD_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.28668212890625	2	486.239658	970.464763	1.9552	0.00095068	-1.0183	-0.00049515	0.93684	0.00045553	486.2390818338648	18.456	1.2768	18.456	18.186	19.463	0					31	25	2	0	0	0	0.027866	1	261	261		18.324	0	1	17995			24914	7034	17181	17219	28791	28791					-0.021650299506063675
IFFFSLVQ	8	Unmodified	_IFFFSLVQ_					0	0	0			REV__ENSG00000112394|ENST00000368851|SLC16A10	REV__ENSG00000112394|ENST00000368851|SLC16A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.308349609375	2	500.778754	999.542954	-0.32176	-0.00016113	1.0405	0.00052108	0.71877	0.00035995	500.7788810352071	73.041	1.1804	73.041	72.373	73.553	0					56	29	3	0	0	0	0.027866	1	8891	8891		29.15	0	1	580910	+		24915	22002	17182	17220	28792	28792					0.043164474252762375
IFFGHNTLC	9	Unmodified	_IFFGHNTLC_					0	0	0			REV__ENST00000529212.1_1_14:61509878-61512131:+|nuORF	REV__ENST00000529212.1_1_14:61509878-61512131:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7550659179688	2	526.25512	1050.49569	1.0177	0.00053557	2.4483	0.0012884	3.466	0.001824	526.2564083545327	36.865	0.74802	36.656	36.405	37.153	-0.2092					30	18	2	0	0	0	0.024539	1	2910	2910		27.882	6.9353	1	416550	+		24916	34511	17183	17221	28793	28793					-0.0275415511734991
IFFLGPCLSA	10	Unmodified	_IFFLGPCLSA_					0	0	0		ENST00000374837.7_1_20:33147851-33148046:+|nuORF	ENST00000374837.7_1_20:33147851-33148046:+|nuORF	ENST00000374837.7_1_20:33147851-33148046:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.282470703125	2	534.283346	1066.55214	-0.27823	-0.00014865	0.85897	0.00045893	0.58074	0.00031028	534.283701816782	107.67	0.23683	107.66	107.6	107.84	-0.0056458					18	11	3	0	0	0	1.1166	1	13769	13769		30.504	2.6214	1	2196400			24917	13136	17184	17222	28794	28794					0.02152472719308207
IFFLHFPS	8	Unmodified	_IFFLHFPS_					0	0	0		ENST00000300952.6_1_19:1257715-1257928:+|nuORF	ENST00000300952.6_1_19:1257715-1257928:+|nuORF	ENST00000300952.6_1_19:1257715-1257928:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.76702880859375	2	504.271096	1006.52764	-0.71188	-0.00035898	-3.4258	-0.0017275	-4.1377	-0.0020865	504.26879789946184	65.686	0.49636	65.435	65.229	65.726	-0.25112					16	11	2	0	0	0	0.027866	1	7528	7528		37.028	3.5355	1	613770			24918	11914	17185	17223	28795	28795					0.02463580628091222
IFFMPLIKL	9	Unmodified	_IFFMPLIKL_					0	0	0			REV__ENSG00000117834|ENST00000438567|SLC5A9	REV__ENSG00000117834|ENST00000438567|SLC5A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.2792358398438	2	561.343206	1120.67186	-0.65028	-0.00036503	2.7482	0.0015427	2.0979	0.0011777	561.343831843153	84.881	0.41453	84.907	84.704	85.119	0.025536					12	9	2	0	0	0	0.024325	1	10530	10530		50.025	0	1	54071	+		24919	22375	17186	17224	28796	28796					0.11635086063847666
IFFRLFSK	8	Unmodified	_IFFRLFSK_					0	0	0			REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF	REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.298828125	2	529.313295	1056.61204	1.9958	0.0010564	1.096	0.00058015	3.0919	0.0016366	529.3138439177485	18.323	0.2455	18.323	18.186	18.431	0					6	4	2	0	0	0	0.027866	1	263	263		19.36	7.1531	1	10955	+		24920	30615	17187	17225	28797	28797					0.08599531444838249
IFFRLLLI	8	Unmodified	_IFFRLLLI_					0	0	0			REV__nc|ENSG00000188782|Q7RTX7-2|CATSPER4	REV__nc|ENSG00000188782|Q7RTX7-2|CATSPER4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3052368164062	2	517.841688	1033.66882	0.39785	0.00020602	1.6648	0.00086212	2.0627	0.0010681	517.8427142408261	60.126	0.14519	59.929	59.838	59.983	-0.19742					5	3	2	0	0	0	0.027866	1	6677	6677		5.0869	0	1	100720	+		24921	28064	17188	17226	28798	28798					0.1533357900136707
IFGDDTTIY	9	Unmodified	_IFGDDTTIY_					0	0	0		ENST00000340934.9_1_1:222908062-222908212:+|nuORF	ENST00000340934.9_1_1:222908062-222908212:+|nuORF	ENST00000340934.9_1_1:222908062-222908212:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.747802734375	2	522.747847	1043.48114	0.62882	0.00032871	-0.50714	-0.00026511	0.12167	6.3605E-05	522.7474507832471	74.465	1.6535	74.282	73.961	75.615	-0.18278					83	39	3	0	0	0	0.30842	1	8807	8807		74.517	3.1387	1	2180700			24922	12480	17189	17227	28799	28799					-0.03885948784522952
IFGDEPNITF	10	Unmodified	_IFGDEPNITF_					0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.240966796875	2	576.782222	1151.54989	0.17286	9.9703E-05	-0.41696	-0.00024049	-0.2441	-0.00014079	576.7819326244098	68.443	0.68382	68.213	67.875	68.559	-0.23048					39	16	3	0	0	0	0.03519	1	7948	7948		37.159	9.2769	1	535140	+		24923	36720	17190	17228	28800	28800					-0.019822844848249588
IFGMYFPIL	9	Unmodified	_IFGMYFPIL_					0	0	0			REV__ENSG00000188163|ENST00000344774|FAM166A	REV__ENSG00000188163|ENST00000344774|FAM166A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.3345947265625	2	550.796089	1099.57763	0.091852	5.0592E-05	3.1929	0.0017586	3.2847	0.0018092	550.7976599196584	74.651	0.37933	74.388	74.231	74.61	-0.26326					13	8	2	0	0	0	0.024289	1	8815	8815		49.211	0	1	97555	+		24924	28015	17191	17229	28801	28801					0.03181947241728267
IFGSSTSKLL	10	Unmodified	_IFGSSTSKLL_					0	0	0			REV__ENST00000492522.3_2_17:46781973-46782216:+|nuORF	REV__ENST00000492522.3_2_17:46781973-46782216:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8021240234375	2	526.802957	1051.59136	0.42741	0.00022516	-0.77063	-0.00040597	-0.34322	-0.00018081	526.802395744007	76.326	0.84262	76.338	76.015	76.857	0.011642					60	20	4	0	0	0	0.80817	2	9337	9314;9337		60.118	10.677	1	2897200	+		24925	33741	17192	17230	28802;28803	28803					0.06762896274517516
IFHAARTPAT	10	Unmodified	_IFHAARTPAT_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.79833984375	2	542.79854	1083.58253	-0.12326	-6.6904E-05	0.63031	0.00034213	0.50705	0.00027523	542.798651310599	31.957	1.0246	31.769	31.437	32.462	-0.18768					53	23	4	0	0	0	0.67706	1	2161	2161		68.787	14.011	1	1188700			24926	10139	17193	17231	28804	28804					0.04407967428710435
IFHGKVPFT	9	Unmodified	_IFHGKVPFT_					0	0	0			REV__ENST00000450995.1_1_10:70985601-70992219:-|nuORF	REV__ENST00000450995.1_1_10:70985601-70992219:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3259887695312	2	523.295102	1044.57565	-0.89697	-0.00046938	0.22782	0.00011922	-0.66914	-0.00035016	523.2944582452654	82.21	0.33143	82.21	82.031	82.363	0					9	7	2	0	0	0	0.024535	1	10236	10236		25.45	5.4534	1	40927	+		24927	32714	17194	17232	28805	28805					0.05514654548142062
IFHGLDTLT	9	Unmodified	_IFHGLDTLT_					0	0	0		ENST00000470600.1_1_1:92161226-92177919:-|nuORF;nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF	ENST00000470600.1_1_1:92161226-92177919:-|nuORF	ENST00000470600.1_1_1:92161226-92177919:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.78466796875	2	508.7742	1015.53385	-0.21368	-0.00010871	3.1196	0.0015871	2.9059	0.0014784	508.77416020609485	73.379	0.7803	73.108	72.678	73.459	-0.27126					42	19	3	0	0	0	0.024354	1	8869	8869		57.811	19.005	1	208250			24928	1405	17195	17233	28806	28806					0.02670054068948957
IFHKQMNL	8	Unmodified	_IFHKQMNL_					0	0	0		COL28A1|p.E948Q|1|0.18|ENSG00000215018|chr7:7373064-7373064|C/G|missense_variant	COL28A1|p.E948Q|1|0.18|ENSG00000215018|chr7:7373064-7373064|C/G|missense_variant	COL28A1|p.E948Q|1|0.18|ENSG00000215018|chr7:7373064-7373064|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2291259765625	2	515.778762	1029.54297	-0.11421	-5.8907E-05	-1.5825	-0.0008162	-1.6967	-0.00087511	516.2784456709607	62.136	0.11671	61.879	61.821	61.937	-0.25725					4	2	2	0	0	0	0.027866	1	6972	6972		42.474	3.6683	1	41260			24929	473	17196	17234	28807	28807					0.02938124153638455
IFHLCCISL	9	Unmodified	_IFHLCCISL_					0	0	0		nc|ENSG00000164270|Q13639-7|HTR4;nc|ENSG00000164270|Q13639-3|HTR4;nc|ENSG00000164270|Q13639-5|HTR4;nc|ENSG00000164270|Q13639-4|HTR4;nc|ENSG00000164270|Q13639-2|HTR4;ENSG00000164270|ENST00000377888|HTR4;nc|ENSG00000164270|Q13639-6|HTR4;nc|ENSG00000164270|Q13639-9|HTR4;nc|ENSG00000164270|Q13639-8|HTR4	nc|ENSG00000164270|Q13639-7|HTR4	nc|ENSG00000164270|Q13639-7|HTR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2973022460938	2	524.769548	1047.52454	0.031346	1.6449E-05	-3.6801	-0.0019312	-3.6487	-0.0019147	524.7682660651733	81.341	1.2176	81.112	80.816	82.034	-0.2289					37	28	2	0	0	0	0.024293	1	9748	9748		42.474	1.9018	1	290330			24930	7248	17197	17235	28808	28808					0.0026824618742011808
IFHLGQHTA	9	Unmodified	_IFHLGQHTA_					0	0	0			REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	REV__nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.270751953125	2	512.272158	1022.52976	0.13357	6.8426E-05	-1.7758	-0.00090972	-1.6423	-0.00084129	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	0.97516	1	12997	12997		25.45	0.94616	1	236480	+		24931	36529	17198	17236	28809	28809					0.01940009365887363
IFHLYTGPS	9	Unmodified	_IFHLYTGPS_					0	0	0		ENST00000513573.1_1_5:20305944-20331508:+|nuORF	ENST00000513573.1_1_5:20305944-20331508:+|nuORF	ENST00000513573.1_1_5:20305944-20331508:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3057250976562	2	517.768917	1033.52328	-0.53574	-0.00027739	0.18191	9.4188E-05	-0.35383	-0.0001832	517.7687199205664	60.616	0.72104	60.363	60.092	60.813	-0.25374					34	17	3	0	0	0	0.024457	1	6713	6713		21.96	8.1846	1	764620			24932	15870	17199	17237	28810	28810					0.007860714144953818
IFHTLYHTD	9	Unmodified	_IFHTLYHTD_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.7826538085938	2	573.782556	1145.55056	-0.37208	-0.00021349	-0.0020392	-1.17E-06	-0.37411	-0.00021466	573.7826166563825	64.424	3.778	64.168	62.634	66.412	-0.25563					213	95	4	0	0	0	0.83071	1	7281	7281		37.159	0.71236	1	6621900			24933	3189	17200	17238	28811	28811					-0.016394450450889053
IFHVVQYL	8	Unmodified	_IFHVVQYL_					0	0	0			REV__F11|p.G18Vfs*4|1|0.06|ENSG00000088926|chr4:186267188-186267188|G/-|frameshift_variant	REV__F11|p.G18Vfs*4|1|0.06|ENSG00000088926|chr4:186267188-186267188|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2910461425781	2	509.789653	1017.56475	-0.61791	-0.000315	0.7051	0.00035945	0.087194	4.4451E-05	510.2917193374833	57.36	0.59761	57.455	57.165	57.763	0.09531					45	15	5	0	0	0	0.85409	1	6367	6367		54.765	3.4292	1	2906400	+		24934	20830	17201	17239	28812	28812					0.056672521738505566
IFIFAICIL	9	Unmodified	_IFIFAICIL_					0	0	0		ENST00000465725.1_1_7:108212170-108215134:+|nuORF;ENST00000491582.1_1_7:108210452-108212392:+|nuORF;ENSG00000128590|ENST00000249356|DNAJB9	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2981567382812	2	526.814282	1051.61401	-1	-0.00052684	0.13484	7.1036E-05	-0.8652	-0.0004558	526.814298868946	38.857	0.66557	38.884	38.651	39.317	0.027275					24	17	3	0	0	0	0.024541	1	3202	3202		8.8223	0	1	220120			24935	4298	17202	17240	28813	28813					0.09026824138436496
IFIKDWVE	8	Unmodified	_IFIKDWVE_					0	0	0			REV__ENST00000334667.6_1_8:56676503-56685965:-|nuORF	REV__ENST00000334667.6_1_8:56676503-56685965:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2852172851562	2	525.286943	1048.55933	-0.71304	-0.00037455	-3.4824	-0.0018293	-4.1954	-0.0022038	525.2850963215387	66.126	0.74928	65.913	65.629	66.378	-0.21327					73	18	7	0	0	0	0.46709	1	7610	7610		88.643	11.869	1	3992900	+		24936	30523	17203	17241	28814	28814					0.03699528591369017
IFIKHVLHS	9	Unmodified	_IFIKHVLHS_					0	0	0		ENST00000395255.7_1_10:64239676-64239931:+|nuORF	ENST00000395255.7_1_10:64239676-64239931:+|nuORF	ENST00000395255.7_1_10:64239676-64239931:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2915649414062	2	547.329476	1092.6444	-0.15555	-8.5138E-05	4.4076	0.0024124	4.252	0.0023273	547.3319145096915	72.039	1.3501	72.039	71.904	73.254	0					47	33	2	0	0	0	0.024457	1	8799	8799		29.15	2.4566	1	44540000			24937	13510	17204	17242	28815	28815					0.10178318847852097
IFIKRDQL	8	Unmodified	_IFIKRDQL_					0	0	0		ENSG00000168615|ENST00000487273|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2822875976562	2	516.813659	1031.61277	-0.1088	-5.6231E-05	-0.5176	-0.0002675	-0.6264	-0.00032373	516.8135061046235	75.065	0.7222	74.807	74.493	75.215	-0.25797					35	17	4	0	0	0	0.027866	1	9151	9151		37.159	0	1	541120			24938	7845	17205	17243	28816	28816					0.09822326093899392
IFISKCIEAT	10	Unmodified	_IFISKCIEAT_					0	0	0		ENST00000394885.7_1_15:77241588-77241771:+|nuORF	ENST00000394885.7_1_15:77241588-77241771:+|nuORF	ENST00000394885.7_1_15:77241588-77241771:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.8057250976562	2	562.804642	1123.59473	-0.62134	-0.00034969	3.92	0.0022062	3.2987	0.0018565	562.8067326724728	34.742	1.0191	34.555	34.241	35.26	-0.18675					57	25	4	0	0	0	1.089	1	2580	2580		34.173	2.6427	1	1967500			24939	13499	17206	17244	28817	28817					0.03787823056859452
IFIVWGVLV	9	Unmodified	_IFIVWGVLV_					0	0	0		ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3236083984375	2	523.325871	1044.63719	-0.84744	-0.00044349	-3.8629	-0.0020215	-4.7103	-0.002465	523.3237443108741	67.129	1.6087	67.129	66.798	68.407	0					101	40	5	0	0	0	0.32257	1	8040	8040		72.62	3.8331	1	10719000			24940	7301	17207	17245	28818	28818					0.1166558624740901
IFKERALPD	9	Unmodified	_IFKERALPD_					0	0	0		nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B;FBXL20-UNC45B|1|fusion	nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3002319335938	2	544.808574	1087.60259	-0.61793	-0.00033665	0.57647	0.00031406	-0.041465	-2.259E-05	544.8087563634283	49.874	0.93547	49.723	49.256	50.191	-0.1512					46	25	3	0	0	0	0.024374	1	5228	5228		49.442	20.292	1	762780			24941	5474	17208	17246	28819	28819					0.06229718368649628
IFKLNVLHS	9	Unmodified	_IFKLNVLHS_					0	0	0		ENST00000254810.8_2_17:73774064-73774193:-|nuORF	ENST00000254810.8_2_17:73774064-73774193:-|nuORF	ENST00000254810.8_2_17:73774064-73774193:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2843627929688	2	535.821484	1069.62842	-1.6737	-0.00089678	-2.6827	-0.0014375	-4.3564	-0.0023342	535.8197694668008	37.778	0.44357	37.778	37.559	38.003	0					25	12	3	0	0	0	0.024541	1	3141	3141		17.365	0	1	321430			24942	11384	17209	17247	28820	28820					0.09638612610956443
IFKNTKKK	8	Unmodified	_IFKNTKKK_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.23223876953125	2	503.824027	1005.6335	-0.68659	-0.00034592	-0.52732	-0.00026568	-1.2139	-0.0006116	503.8238477155762	44.892	0.35872	44.639	44.468	44.826	-0.25252					13	8	2	0	0	0	0.027866	1	4195	4195		26.693	0	1	83218	+		24943	23950	17210	17248	28821	28821					0.13090916473561265
IFKQVQNC	8	Unmodified	_IFKQVQNC_					0	0	0			REV__ENST00000599581.5_1_19:52786637-52794448:+|nuORF	REV__ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25323486328125	2	490.25512	978.495686	-0.15137	-7.4208E-05	-3.5084	-0.00172	-3.6597	-0.0017942	490.25348377958585	43.074	1.3333	42.935	42.312	43.645	-0.13929					100	36	5	0	0	0	0.88442	1	3973	3973		52.299	0.96372	1	22290000	+		24944	28146	17211	17249	28822	28822					0.005578448826327076
IFKRSRKKERQ	11	Unmodified	_IFKRSRKKERQ_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;nc|ENSG00000117481|Q96CB9-3|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3074951171875	3	492.635431	1474.88446	-0.1192	-5.872E-05	-1.9571	-0.00096413	-2.0763	-0.0010229	492.6344955080652	101.17	0.95171	101.18	100.79	101.74	0.0090332					33	21	2	0	0	0	0.024865	1	12908	12908		17.167	10.846	1	73120			24945	3633	17212	17250	28823	28823					0.1660168844805412
IFKRSRKKERQ	11	Unmodified	_IFKRSRKKERQ_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;nc|ENSG00000117481|Q96CB9-3|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3076477050781	3	492.635431	1474.88446	0.15044	7.4113E-05	-2.3275	-0.0011466	-2.1771	-0.0010725	492.63428342526726	101.29	1.0365	101.29	100.85	101.89	-0.0054398					38	23	2	0	0	0	0.024856	1	12874	12874		13.508	10.656	1	53684			24946	3633	17212	17250	28824	28824					0.1660168844805412
IFKWSQPL	8	Unmodified	_IFKWSQPL_					0	0	0			REV__ENST00000472633.1_1_12:7022280-7023170:+|nuORF	REV__ENST00000472633.1_1_12:7022280-7023170:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.78729248046875	2	509.789653	1017.56475	-1.6617	-0.0008471	-2.5141	-0.0012816	-4.1757	-0.0021288	509.78813996348833	60.138	0.67382	60.217	59.9	60.573	0.078884					43	17	4	0	0	0	0.71833	1	6825	6825		65.803	4.1119	1	5200200	+		24947	33213	17213	17251	28825	28825					0.056672521738505566
IFLDALDKI	9	Unmodified	_IFLDALDKI_					0	0	0		ENSG00000164879|ENST00000285381|CA3	ENSG00000164879|ENST00000285381|CA3	ENSG00000164879|ENST00000285381|CA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.3098754882812	2	524.307875	1046.6012	0.45855	0.00024042	-1.92	-0.0010067	-1.4615	-0.00076626	524.3071442169525	74.93	0.87778	74.747	74.309	75.187	-0.18279					52	20	4	0	0	0	0.10174	1	8853	8853		110.12	16.924	1	2620600			24948	7332	17214	17252	28826	28826					0.07976084279880524
IFLEALPE	8	Unmodified	_IFLEALPE_					0	0	0		nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7607421875	2	466.260394	930.506234	0.17587	8.2003E-05	4.429	0.0020651	4.6048	0.0021471	466.2626221236669	86.541	2.1099	86.496	85.116	87.226	-0.045097					89	49	3	0	0	0	0.027866	1	10865	10865		25.45	2.4077	1	1221900			24949	3915	17215	17253	28827	28827					0.03820150808701328
IFLFCFWF	8	Unmodified	_IFLFCFWF_					0	0	0			REV__ENST00000367137.3_1_1:205760066-205760288:-|nuORF	REV__ENST00000367137.3_1_1:205760066-205760288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3233642578125	2	561.777699	1121.54085	-0.10817	-6.0768E-05	0.29251	0.00016432	0.18434	0.00010356	562.2799843950839	69.894	0.53946	69.672	69.39	69.929	-0.22246					21	12	3	0	0	0	0.027866	1	8081	8081		43.626	16.933	1	789130	+		24950	31005	17216	17254	28828	28828					-0.015063045841998246
IFLFLFLNY	9	Unmodified	_IFLFLFLNY_					0	0	0		ENSG00000188324|ENST00000358433|OR6C6	ENSG00000188324|ENST00000358433|OR6C6	ENSG00000188324|ENST00000358433|OR6C6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.7985229492188	2	595.336436	1188.65832	-0.20489	-0.00012198	2.2106	0.0013161	2.0057	0.0011941	595.3374425110492	79.335	0.50245	79.184	78.943	79.446	-0.15051					14	11	2	0	0	0	0.024517	1	9502	9502		26.796	0	1	51558			24951	9710	17217	17255	28829	28829					0.07153551556302773
IFLFVNNKLT	10	Unmodified	_IFLFVNNKLT_					0	0	0			REV__USP29|p.H681Qfs*23|1|0.07|ENSG00000131864|chr19:57130717-57130718|-/ACGGG|frameshift_variant	REV__USP29|p.H681Qfs*23|1|0.07|ENSG00000131864|chr19:57130717-57130718|-/ACGGG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5722961425781	3	403.572775	1207.69649	0.47636	0.00019225	-2.7507	-0.0011101	-2.2743	-0.00091785	403.5716517356722	42.594	1.719	42.471	42.116	43.834	-0.12299					117	45	4	0	0	0	1.0997	1	3857	3857		32.751	0	1	5393200	+		24952	23240	17218	17256	28830	28830					0.10095437470931756
IFLHLKLHV	9	Unmodified	_IFLHLKLHV_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.2988891601562	2	560.355494	1118.69644	-0.73816	-0.00041363	-2.8435	-0.0015934	-3.5817	-0.002007	560.353881495119	28.103	0.44514	28.098	27.929	28.374	-0.0042019					16	10	2	0	0	0	0.024541	1	1619	1619		28.254	4.0515	1	45967	+		24953	22537	17219	17257	28831	28831					0.14183482261569225
IFLHLKLHV	9	Unmodified	_IFLHLKLHV_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	560.355494	1118.69644	-0.90929	-0.00050953	-3.7695	-0.0021123	-4.6788	-0.0026218	560.3535723718353	28.201	0.4073	28.201	27.999	28.406	0	0.078999	-0.00065366	NaN	28.254	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51456	+		24954	22537	17219	17257							0.14183482261569225
IFLHVHPAGP	10	Unmodified	_IFLHVHPAGP_					0	0	0			REV__ENST00000441493.6_1_22:18272311-18272575:-|nuORF	REV__ENST00000441493.6_1_22:18272311-18272575:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8500366210938	2	544.306001	1086.59745	-0.74107	-0.00040337	-3.7456	-0.0020387	-4.4866	-0.0024421	544.3040896553082	77.312	0.25214	77.101	76.954	77.206	-0.21087					7	5	2	0	0	0	0.03519	1	9498	9498		44.531	0	1	200950	+		24955	32547	17220	17258	28832	28832					0.05761459296695648
IFLLGSIGLL	10	Unmodified	_IFLLGSIGLL_					0	0	0			REV__ENSG00000184544|ENST00000571134|DHRS7C	REV__ENSG00000184544|ENST00000571134|DHRS7C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3038940429688	2	523.336436	1044.65832	0.50376	0.00026364	-1.111	-0.00058142	-0.60723	-0.00031778	523.3355826901187	85.51	0.67641	85.372	85.155	85.832	-0.13752					32	15	3	0	0	0	0.03519	1	10352	10352		44.117	0	1	193880	+		24956	27679	17221	17259	28833	28833					0.13777551556268008
IFLLQVLYG	9	Unmodified	_IFLLQVLYG_					0	0	0		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.254638671875	2	533.320786	1064.62702	-0.31095	-0.00016584	-1.727	-0.00092105	-2.038	-0.0010869	533.319781180751	106.51	0.37453	106.51	106.3	106.68	0.0018311					20	11	2	0	0	0	0.024541	1	13610	13610		17.365	0.89182	1	182280			24957	9393	17222	17260	28834	28834					0.09728978522161924
IFLLTGVPGL	10	Unmodified	_IFLLTGVPGL_					0	0	0		ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.321533203125	2	515.320786	1028.62702	-0.16043	-8.2674E-05	0.06236	3.2135E-05	-0.098072	-5.0539E-05	515.3203797922889	71.675	1.2413	71.686	71.05	72.291	0.010735					77	30	4	0	0	0	0.21215	1	8615	8615		119.56	9.2196	1	4529000			24958	10031	17223	17261	28835	28835					0.11384978522187339
IFLLVDENG	9	Unmodified	_IFLLVDENG_					0	0	0		ENSG00000112599|ENST00000230361|GUCA1B	ENSG00000112599|ENST00000230361|GUCA1B	ENSG00000112599|ENST00000230361|GUCA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2742919921875	2	510.274032	1018.53351	-0.32944	-0.0001681	0.91275	0.00046575	0.58331	0.00029765	510.2742095600325	75.715	0.98311	75.443	75.06	76.043	-0.27266					59	24	4	0	0	0	0.53979	1	8969	8969		56.721	3.3696	1	1696200			24959	3224	17224	17262	28836	28836					0.02498634349092299
IFLMVLYLN	9	Unmodified	_IFLMVLYLN_					0	0	0		ENSG00000261594|ENST00000562197|TPBGL	ENSG00000261594|ENST00000562197|TPBGL	ENSG00000261594|ENST00000562197|TPBGL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.3255004882812	2	563.322471	1124.63039	-0.17718	-9.9812E-05	3.1755	0.0017888	2.9983	0.001689	563.3240087983075	62.97	0.73461	62.711	62.541	63.276	-0.25824					40	19	3	0	0	0	0.21579	1	7080	7080		86.935	1.5751	1	969790			24960	10952	17225	17263	28837	28837					0.07305905304542648
IFLNEIPPF	9	Unmodified	_IFLNEIPPF_					0	0	0		nc|ENSG00000144504|Q9P2S6|ANKMY1;ENSG00000144504|ENST00000401804|ANKMY1	nc|ENSG00000144504|Q9P2S6|ANKMY1	nc|ENSG00000144504|Q9P2S6|ANKMY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3026123046875	2	545.302593	1088.59063	-0.13959	-7.6119E-05	-1.6988	-0.00092634	-1.8384	-0.0010025	545.3019655417088	63.586	1.2359	63.327	62.876	64.112	-0.25824					96	31	4	0	0	0	0.29158	1	7171	7171		76.774	3.8949	1	5277100			24961	5746	17226	17264	28838	28838					0.04988101625440322
IFLTAKDLN	9	Unmodified	_IFLTAKDLN_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7677612304688	2	517.797675	1033.5808	-1.0626	-0.00055023	-3.8529	-0.001995	-4.9155	-0.0025452	517.7958227674558	52.035	0.43209	52.127	51.93	52.363	0.091938					18	10	2	0	0	0	0.024257	1	5503	5503		77.318	31.345	1	262580			24962	6006	17227	17265	28839	28839					0.06534913620112093
IFLTGLVQL	9	Unmodified	_IFLTGLVQL_					0	0	0			REV__nc|ENSG00000145860|Q96MT1-4|RNF145	REV__nc|ENSG00000145860|Q96MT1-4|RNF145	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2879638671875	2	502.312961	1002.61137	0.54879	0.00027567	-0.65559	-0.00032931	-0.10679	-5.3644E-05	502.3121914203613	71.514	0.53949	71.226	71.036	71.575	-0.28857					20	13	2	0	0	0	0.022587	1	8645	8645		84.916	0	1	306320	+		24963	36754	17228	17266	28840	28840					0.11016692005136974
IFLTGRLSSA	10	Unmodified	_IFLTGRLSSA_					0	0	0		ENSG00000130881|ENST00000253193|LRP3	ENSG00000130881|ENST00000253193|LRP3	ENSG00000130881|ENST00000253193|LRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8422241210938	2	532.808574	1063.60259	-0.24367	-0.00012983	1.8294	0.0009747	1.5857	0.00084487	532.8083911627374	51.302	0.64791	51.302	50.92	51.568	0					23	17	2	0	0	0	0.03519	1	5451	5451		35.618	20.753	1	259270			24964	4472	17229	17267	28841	28841					0.07333718368658992
IFLYMSSL	8	Unmodified	_IFLYMSSL_					0	0	0			REV__ENST00000368921.4_1_1:151040077-151040245:+|nuORF	REV__ENST00000368921.4_1_1:151040077-151040245:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2540588378906	2	487.256797	972.499041	-1.3581	-0.00066176	-2.4494	-0.0011935	-3.8075	-0.0018552	487.2554473046404	64.906	0.96684	64.643	64.341	65.307	-0.2626					48	25	3	0	0	0	0.48546	1	7623	7623		86.935	7.4836	1	2238300	+		24965	31074	17230	17268	28842	28842					0.011690949366311543
IFMHVALVG	9	Unmodified	_IFMHVALVG_					0	0	0			REV__ENSG00000166862|ENST00000300105|CACNG2	REV__ENSG00000166862|ENST00000300105|CACNG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.29632568359375	2	493.778231	985.541908	0.018623	9.1954E-06	0.018514	9.1416E-06	0.037136	1.8337E-05	493.7782243049718	106.5	0.38448	106.5	106.32	106.7	0.0018311					15	11	2	0	0	0	0.023868	1	13596	13596		49.211	0	1	60389	+		24966	26068	17231	17269	28843	28843					0.04855909784737378
IFMLKSWF	8	Unmodified	_IFMLKSWF_					0	0	0			REV__ENST00000558522.5_1_15:79165359-79183469:+|nuORF	REV__ENST00000558522.5_1_15:79165359-79183469:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2352905273438	2	536.288431	1070.56231	-0.57691	-0.00030939	3.6179	0.0019403	3.041	0.0016309	536.2902188316223	67.853	0.65858	67.615	67.334	67.992	-0.23814					29	15	3	0	0	0	0.027866	1	7788	7788		55.504	8.7378	1	243240	+		24967	35096	17232	17270	28844	28844					0.02985080444545929
IFMNNFQL	8	Oxidation (M)	_IFM(Oxidation (M))NNFQL_		IFM(1)NNFQL		IFM(68)NNFQL	0	0	1		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8345336914062	2	521.754953	1041.49535	0.46328	0.00024172	-3.933	-0.002052	-3.4697	-0.0018103	521.7531725720875	69.855	0.20657	69.562	69.427	69.633	-0.29291					6	4	2	0	0	0	0.027866	1	8372	8372		68.485	13.72	1	48136			24968	6165	17233	17271	28845	28845		258			-0.023735748372246235
IFMPLLKLF	9	Unmodified	_IFMPLLKLF_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.3446655273438	2	561.343206	1120.67186	-0.39471	-0.00022157	3.7626	0.0021121	3.3679	0.0018906	561.3451353792289	60.635	0.75615	60.429	60.172	60.928	-0.20599					53	18	4	0	0	0	0.80658	1	6753	6753		38.806	1.647	1	1243800	+		24969	28462	17234	17272	28846	28846					0.11635086063847666
IFNCINSF	8	Carbamidomethyl (C)	_IFNC(Carbamidomethyl (C))INSF_	IFNC(1)INSF		IFNC(69)INSF		0	1	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7408752441406	2	507.739302	1013.46405	-0.96304	-0.00048897	4.2991	0.0021828	3.3361	0.0016939	507.7413292974866	51.592	2.3667	51.316	50.299	52.665	-0.27643					147	62	3	0	0	0	0.68164	1	5298	5298		68.787	6.6794	1	2210900			24970	10737	17235	17273	28847	28847	151				-0.042141478713119795
IFNCINSF	8	Carbamidomethyl (C)	_IFNC(Carbamidomethyl (C))INSF_	IFNC(1)INSF		IFNC(91)INSF		0	1	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7410583496094	2	507.739302	1013.46405	0.65811	0.00033415	2.6994	0.0013706	3.3575	0.0017047	507.7405865423557	51.393	2.4266	51.212	50.132	52.559	-0.1816					135	63	3	0	0	0	0.44658	3	5298	5267;5280;5298		90.777	16.802	1	1800900			24971	10737	17235	17273	28848;28849;28850	28850	151				-0.042141478713119795
IFNETIQQL	9	Unmodified	_IFNETIQQL_					0	0	0			REV__BRINP3|p.L127F|1|0.12|ENSG00000162670|chr1:190281608-190281608|G/A|missense_variant	REV__BRINP3|p.L127F|1|0.12|ENSG00000162670|chr1:190281608-190281608|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3223266601562	2	553.298039	1104.58152	-0.16352	-9.0476E-05	4.1516	0.0022971	3.9881	0.0022066	553.3015281952671	68.509	0.46916	68.216	67.936	68.405	-0.29267					17	11	2	0	0	0	0.023239	1	8179	8179		74.255	10.048	1	347330	+		24972	19219	17236	17274	28851	28851					0.033417082691585165
IFNETIQQL	9	Unmodified	_IFNETIQQL_					0	0	0			REV__BRINP3|p.L127F|1|0.12|ENSG00000162670|chr1:190281608-190281608|G/A|missense_variant	REV__BRINP3|p.L127F|1|0.12|ENSG00000162670|chr1:190281608-190281608|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.298039	1104.58152	0.26859	0.00014861	2.2235	0.0012302	2.4921	0.0013789	553.2993307172686	68.866	0.52586	68.623	68.39	68.916	-0.24277	0.25689	-0.0016323	NaN	74.255	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89904	+		24973	19219	17236	17274							0.033417082691585165
IFNLFSNLI	9	Unmodified	_IFNLFSNLI_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3321533203125	2	540.808042	1079.60153	-0.52294	-0.00028281	-4.037	-0.0021833	-4.56	-0.0024661	540.8058936179639	67.837	1.0288	67.549	66.911	67.94	-0.28834					20	13	2	0	0	0	0.024261	1	8048	8048		64.207	24.954	1	422020	+		24974	37247	17237	17275	28852	28852					0.06491503999768611
IFNLFSNLI	9	Unmodified	_IFNLFSNLI_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.808042	1079.60153	-0.19631	-0.00010616	-8.5877	-0.0046443	-8.784	-0.0047504	540.8037710070755	67.818	0.2452	67.584	67.471	67.716	-0.23375	0.032119	-0.0047187	NaN	64.207	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61264	+		24975	37247	17237	17275							0.06491503999768611
IFNLNKVIS	9	Unmodified	_IFNLNKVIS_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.3114013671875	2	524.313492	1046.61243	-0.23735	-0.00012445	1.1497	0.00060282	0.91239	0.00047838	524.3140269223265	75.331	0.61878	75.058	74.766	75.384	-0.27267					49	14	4	0	0	0	0.10174	1	8889	8889		110.12	2.0324	1	1029000	+		24976	23290	17238	17276	28853	28853					0.09098906374038052
IFNLNKVIS	9	Unmodified	_IFNLNKVIS_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3116455078125	2	524.313492	1046.61243	-0.2492	-0.00013066	1.2102	0.00063454	0.96103	0.00050388	524.3138457899794	75.264	0.6188	75.005	74.779	75.398	-0.25866					33	14	3	0	0	0	0.12602	1	8905	8905		104.75	3.1458	1	1069200	+		24977	23290	17238	17276	28854	28854					0.09098906374038052
IFNLNKVIS	9	Unmodified	_IFNLNKVIS_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.313492	1046.61243	-1.4988	-0.00078585	2.7608	0.0014475	1.262	0.00066166	524.3147754490516	75.128	0.96924	75.128	74.875	75.844	0	0.02848	0.0015756	NaN	110.12	51	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547620	+		24978	23290	17238	17276							0.09098906374038052
IFNLNKVIS	9	Unmodified	_IFNLNKVIS_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.313492	1046.61243	-0.55547	-0.00029124	1.4939	0.00078327	0.93843	0.00049203	524.3139483053858	75.42	1.4676	75.175	74.918	76.386	-0.24455	0.075901	0.00024709	NaN	110.12	73	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	764960	+		24979	23290	17238	17276							0.09098906374038052
IFNLNKVIS	9	Unmodified	_IFNLNKVIS_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.313492	1046.61243	0.18794	9.8538E-05	0.81495	0.00042729	1.0029	0.00052583	524.3137185174597	75.225	1.1166	75.236	74.973	76.089	0.010376	0.13633	-0.00046487	NaN	110.12	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592510	+		24980	23290	17238	17276							0.09098906374038052
IFNPVKIDL	9	Unmodified	_IFNPVKIDL_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7713623046875	2	529.815867	1057.61718	-0.61469	-0.00032568	-3.7469	-0.0019851	-4.3616	-0.0023108	529.8129857654012	65.166	0.44641	64.931	64.768	65.214	-0.2345					17	10	2	0	0	0	0.024477	1	7415	7415		27.882	0	1	617450			24981	7534	17239	17277	28855	28855					0.09067790516814966
IFNPVKIDL	9	Unmodified	_IFNPVKIDL_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.815867	1057.61718	-1.6191	-0.00085781	-1.763	-0.00093407	-3.3821	-0.0017919	529.8140680221569	65.186	0.5293	64.984	64.778	65.307	-0.20254	0.026689	0.00026042	NaN	26.693	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791920			24982	7534	17239	17277							0.09067790516814966
IFNRWINN	8	Unmodified	_IFNRWINN_					0	0	0		ENSG00000136011|ENST00000388887|STAB2;STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;STAB2|p.T1102Qfs*18|1|0.1|ENSG00000136011|chr12:103692818-103692818|A/-|frameshift_variant;STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7968139648438	2	538.785433	1075.55631	-0.92968	-0.0005009	-0.11845	-6.3819E-05	-1.0481	-0.00056472	538.7852886072468	75.8	0.68272	75.556	75.266	75.949	-0.24455					47	18	4	0	0	0	0.027866	1	9321	9321		52.299	0	1	1767300			24983	4969	17240	17278	28856	28856					0.021556982572064953
IFNVKRCGN	9	Unmodified	_IFNVKRCGN_					0	0	0		ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant;nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.7943115234375	2	525.779293	1049.54403	-0.45925	-0.00024147	-3.2062	-0.0016858	-3.6655	-0.0019272	525.7776922417183	69.984	0.27824	69.984	69.75	70.029	0					13	6	3	0	0	0	0.024506	1	8450	8450		38.806	0	1	493410			24984	23	17241	17279	28857	28857					0.02124338522526159
IFPARMLQS	9	Unmodified	_IFPARMLQS_					0	0	0		ENST00000526787.2_1_11:134023592-134023808:-|nuORF	ENST00000526787.2_1_11:134023592-134023808:-|nuORF	ENST00000526787.2_1_11:134023592-134023808:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.30615234375	2	531.791869	1061.56919	1.0926	0.00058102	-0.056302	-2.9941E-05	1.0363	0.00055108	532.2933774408626	59.343	0.36068	59.143	58.958	59.318	-0.20016					11	9	2	0	0	0	0.024427	1	6726	6726		42.396	0	1	149240			24985	16132	17242	17280	28858	28858					0.040863933251102935
IFPKHSQEP	9	Unmodified	_IFPKHSQEP_					0	0	0		ENST00000575606.5_1_18:3594122-3597210:+|nuORF;ENST00000317114.1_1_18:3594116-3596578:+|nuORF;ENST00000574411.5_1_18:3594128-3597182:+|nuORF;ENST00000576606.5_1_18:3594116-3597223:+|nuORF	ENST00000575606.5_1_18:3594122-3597210:+|nuORF	ENST00000575606.5_1_18:3594122-3597210:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.78369140625	2	541.785099	1081.55564	-0.78582	-0.00042575	0.40768	0.00022087	-0.37815	-0.00020488	541.785132399779	67.44	1.1204	67.152	66.665	67.785	-0.28834					70	27	3	0	0	0	0.27161	1	8041	8041		79.451	2.6769	1	2047100			24986	12157	17243	17281	28859	28859					0.01812858817538654
IFPKHSQEP	9	Unmodified	_IFPKHSQEP_					0	0	0		ENST00000575606.5_1_18:3594122-3597210:+|nuORF;ENST00000317114.1_1_18:3594116-3596578:+|nuORF;ENST00000574411.5_1_18:3594128-3597182:+|nuORF;ENST00000576606.5_1_18:3594116-3597223:+|nuORF	ENST00000575606.5_1_18:3594122-3597210:+|nuORF	ENST00000575606.5_1_18:3594122-3597210:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.784912109375	2	541.785099	1081.55564	-0.72491	-0.00039274	0.53067	0.00028751	-0.19424	-0.00010523	541.7852362755399	67.259	1.1745	67.282	66.685	67.86	0.023903					65	28	3	0	0	0	0.23085	1	7940	7940		84.916	2.6105	1	2139300			24987	12157	17243	17281	28860	28860					0.01812858817538654
IFPKKKRHPM	10	Unmodified	_IFPKKKRHPM_					0	0	0			REV__ENSG00000135521|ENST00000367576|LTV1	REV__ENSG00000135521|ENST00000367576|LTV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8823852539062	2	641.38426	1280.75397	-1.6167	-0.0010369	-2.091	-0.0013411	-3.7077	-0.0023781	641.383806737699	105.79	0.54493	105.66	105.32	105.86	-0.12444					47	16	4	0	0	0	1.1237	1	13183	13183		23.042	0.46283	1	170960	+		24988	23553	17244	17282	28861	28861					0.12482001195508019
IFPLGTYW	8	Unmodified	_IFPLGTYW_					0	0	0			REV__ENSG00000189369|ENST00000340438|GSPT2	REV__ENSG00000189369|ENST00000340438|GSPT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.76116943359375	2	498.763104	995.511654	-0.29605	-0.00014766	-3.6616	-0.0018263	-3.9576	-0.0019739	498.7611044104058	52.64	0.5872	52.381	52.135	52.723	-0.25838					43	14	4	0	0	0	0.98906	1	5479	5479		39.021	0.21535	1	1001300	+		24989	28117	17245	17283	28862	28862					0.013718743911795173
IFPLICLVS	9	Unmodified	_IFPLICLVS_					0	0	0		ENST00000262244.5_1_9:27330174-27330228:-|nuORF	ENST00000262244.5_1_9:27330174-27330228:-|nuORF	ENST00000262244.5_1_9:27330174-27330228:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.7973327636719	2	502.796089	1003.57763	0.32843	0.00016513	3.5021	0.0017609	3.8306	0.001926	502.7976872467714	19.468	0.54307	19.307	19.084	19.627	-0.16079					28	10	4	0	0	0	0.64155	1	430	430		50.025	7.1603	1	353890			24990	11492	17246	17284	28863	28863					0.07597947241720249
IFPLYLGTS	9	Unmodified	_IFPLYLGTS_					0	0	0		ACKR4|p.R190L|1|0.08|ENSG00000129048|chr3:132600966-132600966|G/T|missense_variant	ACKR4|p.R190L|1|0.08|ENSG00000129048|chr3:132600966-132600966|G/T|missense_variant	ACKR4|p.R190L|1|0.08|ENSG00000129048|chr3:132600966-132600966|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7457580566406	2	505.781493	1009.54843	-0.46605	-0.00023572	0.94362	0.00047727	0.47758	0.00024155	505.78155758425424	82.427	0.66602	82.427	81.869	82.535	0					20	15	2	0	0	0	0.024466	1	10242	10242		33.516	6.7195	1	68288			24991	15	17247	17285	28864	28864					0.04404126217104931
IFPQDLRSL	9	Unmodified	_IFPQDLRSL_					0	0	0			REV__ENSG00000186185|ENST00000593135|KIF18B	REV__ENSG00000186185|ENST00000593135|KIF18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2354125976562	2	544.808574	1087.60259	0.015506	8.4477E-06	-0.18635	-0.00010153	-0.17084	-9.3078E-05	544.8083500901153	58.79	0.56415	58.608	58.308	58.872	-0.18134					24	13	2	0	0	0	0.024319	1	6481	6481		47.657	5.1829	1	584050	+		24992	27831	17248	17286	28865	28865					0.06229718368649628
IFPRSIALV	9	Unmodified	_IFPRSIALV_					0	0	0			REV__ENSG00000167654|ENST00000450849|ATCAY	REV__ENSG00000167654|ENST00000450849|ATCAY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2877502441406	2	508.318577	1014.6226	-0.35974	-0.00018286	-1.7471	-0.00088807	-2.1068	-0.0010709	508.31724363062204	62.106	0.17839	61.879	61.766	61.945	-0.22663					6	4	2	0	0	0	0.024506	1	7194	7194		30.504	2.6214	1	72732	+		24993	26172	17249	17287	28866	28866					0.11587514099267082
IFPSIVTEN	9	Unmodified	_IFPSIVTEN_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8084411621094	2	510.274032	1018.53351	0.08852	4.5169E-05	3.6336	0.0018541	3.7221	0.0018993	510.2754230721616	68.483	0.77717	68.19	67.857	68.634	-0.29267					36	19	3	0	0	0	0.024381	1	8204	8204		55.504	11.387	1	290550	+		24994	28819	17250	17288	28867	28867					0.02498634349092299
IFPTPTSLAE	10	Unmodified	_IFPTPTSLAE_					0	0	0			REV__ENST00000444527.2_1_8:56366358-56367090:-|nuORF	REV__ENST00000444527.2_1_8:56366358-56367090:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.2942504882812	2	538.28714	1074.55973	-0.8514	-0.0004583	4.3317	0.0023317	3.4803	0.0018734	538.2871414557976	91.593	1.0396	91.58	91.115	92.155	-0.012383					73	24	5	0	0	0	0.82838	1	11581	11581		58.782	0.55203	1	1666100	+		24995	32594	17251	17289	28868	28868					0.02542903520566142
IFPVGGSVLY	10	Unmodified	_IFPVGGSVLY_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2938842773438	2	526.294768	1050.57498	-0.90052	-0.00047394	-3.2811	-0.0017268	-4.1816	-0.0022007	526.2930009797254	52.281	0.69477	52.162	51.904	52.599	-0.11875					52	17	4	0	0	0	0.87795	1	5413	5413		55.504	0.78186	1	5049700	+		24996	37059	17252	17290	28869	28869					0.051718151084287456
IFPVGGSVLY	10	Unmodified	_IFPVGGSVLY_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.294189453125	2	526.294768	1050.57498	-0.11681	-6.1474E-05	-4.069	-0.0021415	-4.1858	-0.002203	526.2925802064215	52.397	0.79658	52.213	51.963	52.759	-0.18404					51	19	4	0	0	0	0.91051	1	5423	5423		53.351	0.41475	1	5057400	+		24997	37059	17252	17290	28870	28870					0.051718151084287456
IFQEMILA	8	Unmodified	_IFQEMILA_					0	0	0			REV__ENSG00000198133|ENST00000554480|TMEM229B	REV__ENSG00000198133|ENST00000554480|TMEM229B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.76202392578125	2	482.762246	963.50994	0.59976	0.00028954	-0.43845	-0.00021166	0.16131	7.7875E-05	482.76186589010223	86.14	0.69636	85.998	85.711	86.407	-0.14217					46	15	4	0	0	0	0.78609	1	10453	10453		60.294	5.5293	1	674860	+		24998	28389	17253	17291	28871	28871					0.026724973109139682
IFQHLSEN	8	Unmodified	_IFQHLSEN_					0	0	0		ENST00000355467.5_1_2:27821037-27821079:+|nuORF	ENST00000355467.5_1_2:27821037-27821079:+|nuORF	ENST00000355467.5_1_2:27821037-27821079:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.78497314453125	2	494.248349	986.482145	-0.17169	-8.4855E-05	-0.36008	-0.00017797	-0.53176	-0.00026282	494.24803612067467	27.606	0.2983	27.449	27.266	27.564	-0.15664					10	6	2	0	0	0	0.027866	1	1517	1517		79.451	16.145	1	44160			24999	12647	17254	17292	28872	28872					-0.01163689624968356
IFQQEAPE	8	Unmodified	_IFQQEAPE_					0	0	0		ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.27685546875	2	481.234907	960.455261	-1.0334	-0.00049731	2.1915	0.0010546	1.1581	0.00055733	481.23704871489537	51.074	0.58417	51.161	50.927	51.511	0.087009					21	15	2	0	0	0	0.027866	1	5333	5333		53.351	6.585	1	76460			25000	6840	17255	17293	28873	28873					-0.02654798236142142
IFQSKEIPK	9	Unmodified	_IFQSKEIPK_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3002319335938	2	545.318774	1088.623	-0.67281	-0.0003669	-2.7071	-0.0014762	-3.3799	-0.0018431	545.3183680437211	50.422	0.46227	50.27	50.031	50.493	-0.1512					18	13	2	0	0	0	0.024436	1	5228	5228		30.504	0	1	197240	+		25001	21702	17256	17294	28874	28874					0.08222889028456848
IFQSKTEL	8	Unmodified	_IFQSKTEL_					0	0	0			REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	REV__nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.26885986328125	2	483.26875	964.522947	-0.88347	-0.00042695	1.0503	0.00050757	0.16682	8.0619E-05	483.26932738337007	83.044	1.6305	83.071	82.745	84.375	0.02655					103	37	5	0	0	0	0.53523	1	10312	10312		82.305	0	1	12746000	+		25002	22128	17257	17295	28875	28875					0.039266516946554475
IFRFVTGKL	9	Unmodified	_IFRFVTGKL_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;nc|ENSG00000113593|Q96BP3-2|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8316040039062	2	540.831852	1079.64915	-0.96111	-0.0005198	0.027839	1.5056E-05	-0.93328	-0.00050475	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.89441	1	9360	9360		32.812	0	1	94452000			25003	3307	17258	17296	28876	28876					0.11251202990615639
IFRKFLLM	8	Unmodified	_IFRKFLLM_					0	0	0		ENSG00000153976|ENST00000284110|HS3ST3A1	ENSG00000153976|ENST00000284110|HS3ST3A1	ENSG00000153976|ENST00000284110|HS3ST3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7880249023438	2	534.325348	1066.63614	-0.41034	-0.00021925	2.7236	0.0014553	2.3132	0.001236	534.3266638306376	73.473	1.3934	73.473	73.072	74.466	0					46	34	2	0	0	0	0.027866	1	9037	9037		28.254	0	1	1791500			25004	6371	17259	17297	28877	28877					0.10549048606867473
IFRLEGNI	8	Unmodified	_IFRLEGNI_					0	0	0		nc|ENSG00000140463|Q96RK4-2|BBS4;ENSG00000140463|ENST00000268057|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.77349853515625	2	481.276909	960.539266	-0.41992	-0.0002021	-2.0488	-0.00098605	-2.4687	-0.0011882	481.27570846198165	93.405	1.3512	93.413	92.461	93.813	0.0077286					45	31	3	0	0	0	0.027866	1	11778	11778		40.573	17.53	1	619860			25005	18336	17260	17298	28878	28878					0.05741777651417124
IFRLEGNI	8	Unmodified	_IFRLEGNI_					0	0	0		nc|ENSG00000140463|Q96RK4-2|BBS4;ENSG00000140463|ENST00000268057|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.276909	960.539266	-0.046786	-2.2517E-05	-1.1745	-0.00056525	-1.2213	-0.00058777	481.27666240888664	93.291	0.86102	93.169	92.505	93.366	-0.12215	-0.12205	0.00066804	NaN	17.365	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47994			25006	18336	17260	17298							0.05741777651417124
IFRLPNNW	8	Unmodified	_IFRLPNNW_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2343139648438	2	530.290351	1058.56615	-0.47825	-0.00025361	2.271	0.0012043	1.7928	0.00095068	530.2914653747151	67.622	0.46164	67.388	67.134	67.595	-0.23376					17	10	2	0	0	0	0.027866	1	7777	7777		42.474	4.6629	1	112300			25007	6500	17261	17299	28879	28879					0.03920886262608292
IFRLPNNW	8	Unmodified	_IFRLPNNW_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.290351	1058.56615	0.50636	0.00026852	1.4062	0.00074571	1.9126	0.0010142	530.2908416989615	67.624	0.38496	67.369	67.194	67.579	-0.25516	-0.016925	-0.00048055	NaN	42.474	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168470			25008	6500	17261	17299							0.03920886262608292
IFRLVSIVDS	10	Unmodified	_IFRLVSIVDS_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000573175.1_1_17:4451225-4453465:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.8349609375	2	574.837331	1147.66011	0.097744	5.6187E-05	-3.6926	-0.0021227	-3.5949	-0.0020665	574.8352416292701	105.92	0.61894	105.8	105.44	106.06	-0.12381					63	21	4	0	0	0	1.1267	1	13192	13192		29.15	2.4566	1	351890			25009	4599	17262	17300	28880	28880					0.0921856057423156
IFRRRVPD	8	Unmodified	_IFRRRVPD_					0	0	0			REV__ENSG00000128607|ENST00000335420|KLHDC10	REV__ENSG00000128607|ENST00000335420|KLHDC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2784423828125	2	529.814525	1057.6145	0.048651	2.5776E-05	2.2738	0.0012047	2.3225	0.0012305	529.8156850633163	69.23	0.87503	68.937	68.634	69.509	-0.29291					41	22	2	0	0	0	0.027866	1	8341	8341		45.952	3.0877	1	1030700	+		25010	23001	17263	17301	28881	28881					0.08799379902507098
IFRTHLSLN	9	Unmodified	_IFRTHLSLN_					0	0	0			REV__ENSG00000204060|ENST00000641094|FOXO6	REV__ENSG00000204060|ENST00000641094|FOXO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.8548583984375	2	550.81419	1099.61383	-0.61851	-0.00034069	3.0858	0.0016997	2.4672	0.001359	550.8154386822225	80.104	0.63072	80.104	79.87	80.5	0					24	14	3	0	0	0	0.02435	1	9921	9921		51.335	1.3109	1	126350	+		25011	28564	17264	17302	28882	28882					0.06800540462813842
IFRVQEAP	8	Unmodified	_IFRVQEAP_					0	0	0		ENST00000372586.3_1_9:131708521-131708674:-|nuORF	ENST00000372586.3_1_9:131708521-131708674:-|nuORF	ENST00000372586.3_1_9:131708521-131708674:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2691650390625	2	480.269084	958.523616	-0.49667	-0.00023854	1.0423	0.00050056	0.54558	0.00026203	480.2694133637876	67.147	0.97224	66.924	66.714	67.686	-0.22374					55	23	3	0	0	0	0.74904	1	7728	7728		63.306	5.495	1	2156700			25012	13047	17265	17303	28883	28883					0.042694911343687636
IFRVQEAP	8	Unmodified	_IFRVQEAP_					0	0	0		ENST00000372586.3_1_9:131708521-131708674:-|nuORF	ENST00000372586.3_1_9:131708521-131708674:-|nuORF	ENST00000372586.3_1_9:131708521-131708674:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	480.269084	958.523616	-0.11878	-5.7045E-05	0.48925	0.00023497	0.37047	0.00017793	480.2687480495092	67.125	0.12042	67.149	67.071	67.191	0.023911	0.17463	3.6141E-05	NaN	63.306	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28893			25013	13047	17265	17303							0.042694911343687636
IFRVSFVL	8	Unmodified	_IFRVSFVL_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7999572753906	2	490.80002	979.585488	0.51402	0.00025228	-0.98084	-0.00048139	-0.46682	-0.00022911	490.79932538406626	68.401	0.91905	68.158	67.787	68.707	-0.24277					44	22	3	0	0	0	0.96769	1	7909	7909		42.396	3.1433	1	1460700			25014	2826	17266	17304	28884	28884					0.09487842553505743
IFRVSFVL	8	Unmodified	_IFRVSFVL_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.80002	979.585488	-0.69152	-0.0003394	-0.27591	-0.00013542	-0.96744	-0.00047482	490.8001632430393	68.459	1.1875	68.197	67.897	69.084	-0.26165	0.03358	0.00043581	NaN	42.396	59	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1101100			25015	2826	17266	17304							0.09487842553505743
IFRVSFVL	8	Unmodified	_IFRVSFVL_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.80002	979.585488	0.67465	0.00033112	-0.78215	-0.00038388	-0.10751	-5.2764E-05	490.7994542472213	68.365	0.72215	68.135	67.875	68.598	-0.23048	-0.028535	-6.1118E-05	NaN	42.396	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1163900			25016	2826	17266	17304							0.09487842553505743
IFRVVDTVT	9	Unmodified	_IFRVVDTVT_					0	0	0			REV__ENSG00000198879|ENST00000397167|SFMBT2	REV__ENSG00000198879|ENST00000397167|SFMBT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.3034057617188	2	525.303124	1048.5917	0.34328	0.00018032	-0.64285	-0.00033769	-0.29957	-0.00015737	525.3026926763421	63.654	1.0422	63.654	63.126	64.168	0					94	28	4	0	0	0	0.33245	1	7459	7459		71.296	2.5089	1	6369600	+		25017	28505	17267	17305	28885	28885					0.06934315994362805
IFSASSYDV	9	Unmodified	_IFSASSYDV_					0	0	0		nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000513190.1_1_3:129233175-129239105:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122	nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-9|IFT122	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7347717285156	2	494.73474	987.454927	0.5465	0.00027037	-0.15962	-7.8972E-05	0.38687	0.0001914	494.73452890308295	67.84	0.86897	67.585	67.279	68.148	-0.25516					48	20	4	0	0	0	0.55828	2	7815	7805;7815		55.504	7.5886	1	1478700			25018	7169	17268	17306	28886;28887	28887					-0.039302179559967954
IFSGDKIK	8	Unmodified	_IFSGDKIK_					0	0	0			REV__nc|ENSG00000133794|O00327-4|BMAL1	REV__nc|ENSG00000133794|O00327-4|BMAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.26641845703125	2	454.26601	906.517468	0.34886	0.00015848	-0.53664	-0.00024378	-0.18777	-8.53E-05	454.26572077395105	63.424	1.7052	63.166	62.835	64.54	-0.25824					114	43	4	0	0	0	0.42912	1	7137	7137		93.195	0	1	17842000	+		25019	23395	17269	17307	28888	28888					0.06046972902845482
IFSGQVNKFP	10	Unmodified	_IFSGQVNKFP_					0	0	0		ENSG00000175764|ENST00000321582|TTLL11;nc|ENSG00000175764|Q8NHH1-2|TTLL11	ENSG00000175764|ENST00000321582|TTLL11	ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.2769775390625	2	568.808574	1135.60259	-0.84229	-0.0004791	3.995	0.0022724	3.1527	0.0017933	568.8107821824522	78.642	1.2929	78.642	78.323	79.616	0					60	30	3	0	0	0	0.03519	1	9856	9856		60.118	14.166	1	538050			25020	8588	17270	17308	28889	28889					0.04021718368653637
IFSIREVSF	9	Unmodified	_IFSIREVSF_					0	0	0		ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	ENSG00000108561|ENST00000225698|C1QBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.30322265625	2	549.303124	1096.5917	-0.55003	-0.00030213	0.069523	3.8189E-05	-0.48051	-0.00026394	549.3031405933436	78.762	1.7147	78.762	78.363	80.078	0					126	40	6	0	0	0	0.34489	1	9800	9800		69.628	3.1983	1	13542000			25021	2910	17271	17309	28890	28890					0.04726315994366814
IFSKWILL	8	Unmodified	_IFSKWILL_					0	0	0		ENST00000395850.7_1_11:33731450-33731615:-|nuORF;ENST00000533181.1_1_11:33724240-33731615:-|nuORF	ENST00000395850.7_1_11:33731450-33731615:-|nuORF	ENST00000395850.7_1_11:33731450-33731615:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7900695800781	2	510.318046	1018.62154	-0.571	-0.00029139	-2.6901	-0.0013728	-3.2611	-0.0016642	510.3161422540446	42.007	0.32378	41.775	41.546	41.87	-0.23186					12	8	2	0	0	0	0.027866	1	3703	3703		40.573	10.069	1	113990			25022	13533	17272	17310	28891	28891					0.11297299730381383
IFSKWILL	8	Unmodified	_IFSKWILL_					0	0	0		ENST00000395850.7_1_11:33731450-33731615:-|nuORF;ENST00000533181.1_1_11:33724240-33731615:-|nuORF	ENST00000395850.7_1_11:33731450-33731615:-|nuORF	ENST00000395850.7_1_11:33731450-33731615:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.318046	1018.62154	-0.11687	-5.9643E-05	-3.7455	-0.0019114	-3.8624	-0.0019711	510.31590867016814	41.768	0.2965	41.645	41.456	41.752	-0.12299	-0.065037	-0.00033886	NaN	31.955	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122140			25023	13533	17272	17310							0.11297299730381383
IFSMMEVW	8	Oxidation (M)	_IFSM(Oxidation (M))MEVW_		IFSM(0.5)M(0.5)EVW		IFSM(0)M(0)EVW	0	0	1		ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8175659179688	2	529.737914	1057.46127	0.11265	5.9674E-05	0.35033	0.00018558	0.46298	0.00024526	529.7374594099302	67.94	0.72558	67.702	67.422	68.148	-0.23814					33	17	2	0	0	0	0.027866	1	7894	7894		52.299	9.8247	2	640830			25024	15832	17273	17311	28892	28892		524;525			-0.06515739320502689
IFSMNKAGAV	10	Unmodified	_IFSMNKAGAV_					0	0	0		nc|ENSG00000091436|Q9NYL2-2|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.2605590820312	2	519.276052	1036.53755	-0.9266	-0.00048116	-2.3791	-0.0012354	-3.3057	-0.0017166	519.2745595919845	57.82	0.25325	57.913	57.798	58.052	0.092812					9	6	2	0	0	0	0.03519	1	6426	6426		42.396	8.8806	1	217640			25025	18111	17274	17312	28893	28893					0.020744005711549107
IFSPNVVNL	9	Unmodified	_IFSPNVVNL_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7841796875	2	501.784567	1001.55458	0.56938	0.0002857	-1.0377	-0.00052071	-0.46833	-0.000235	501.784023765974	71.995	1.4161	72.004	71.765	73.181	0.0097733					87	35	3	0	0	0	0.1158	1	8696	8696		107.01	16.231	1	21981000			25026	1851	17275	17313	28894	28894					0.05386644448606148
IFSQSVVKV	9	Unmodified	_IFSQSVVKV_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.777099609375	2	503.800217	1005.58588	0.22145	0.00011157	0.11671	5.88E-05	0.33817	0.00017037	503.79963293558956	71.468	0.38711	71.193	70.967	71.354	-0.27509					16	8	3	0	0	0	0.024367	1	8338	8338		29.17	14.305	1	387020	+		25027	28824	17276	17314	28895	28895					0.08331217482714237
IFTASNVSSV	10	Unmodified	_IFTASNVSSV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7882690429688	2	512.769114	1023.52368	0.12452	6.3849E-05	-2.5121	-0.0012881	-2.3876	-0.0012243	512.7678326450381	71.31	1.1336	71.035	70.655	71.788	-0.27509					58	26	4	0	0	0	0.03519	1	8324	8324		109.48	46.172	1	1638500			25028	5667	17277	17315	28896	28896					0.01285446343717922
IFTDQHPAL	9	Unmodified	_IFTDQHPAL_					0	0	0		ENST00000498362.1_1_2:25016366-25039516:+|nuORF	ENST00000498362.1_1_2:25016366-25039516:+|nuORF	ENST00000498362.1_1_2:25016366-25039516:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7737426757812	2	521.271824	1040.5291	-0.60359	-0.00031464	-0.1899	-9.8988E-05	-0.79349	-0.00041362	521.271786395833	61.406	1.1662	61.23	60.914	62.08	-0.1761					77	28	5	0	0	0	0.50848	1	6902	6902		58.782	2.0609	1	7279200			25029	15619	17278	17316	28897	28897					0.010451699261693648
IFTHCRLH	8	Unmodified	_IFTHCRLH_					0	0	0		ENSG00000231861|ENST00000427338|OR5K2	ENSG00000231861|ENST00000427338|OR5K2	ENSG00000231861|ENST00000427338|OR5K2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7698364257812	2	513.768729	1025.5229	-0.35867	-0.00018427	2.6182	0.0013451	2.2595	0.0011609	513.7699832895855	31.176	0.55064	31.188	30.914	31.465	0.011797					35	12	4	0	0	0	0.61897	1	2047	2047		74.517	6.0319	1	1285200			25030	10701	17279	17317	28898	28898					0.011163732136765248
IFTLALAYGA	10	Unmodified	_IFTLALAYGA_					0	0	0		ENSG00000164128|ENST00000296533|NPY1R;NPY1R|p.M39I|1|0.57|ENSG00000164128|chr4:163326438-163326438|C/A|missense_variant	ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2918090820312	2	520.294768	1038.57498	-0.22012	-0.00011453	-3.5296	-0.0018364	-3.7497	-0.001951	520.2927910352751	72.974	0.63861	72.984	72.652	73.29	0.0096512					40	15	4	0	0	0	0.65054	1	8826	8826		71.296	7.0884	1	1311100			25031	7222	17280	17318	28899	28899					0.05723815108422059
IFTLALVFGV	10	Unmodified	_IFTLALVFGV_					0	0	0		ENST00000406434.5_1_2:16804274-16804388:-|nuORF	ENST00000406434.5_1_2:16804274-16804388:-|nuORF	ENST00000406434.5_1_2:16804274-16804388:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8058471679688	2	540.328611	1078.64267	-0.50435	-0.00027252	3.4349	0.001856	2.9305	0.0015834	540.3303190376896	87.418	3.3413	87.239	85.694	89.036	-0.17874					172	79	3	0	0	0	0.03519	1	10811	10811		24.203	1.1603	1	486880			25032	13733	17281	17319	28900	28900					0.1064926503922834
IFTLSRVPL	9	Unmodified	_IFTLSRVPL_					0	0	0			REV__ENST00000404272.2_1_6:13949414-13949672:+|nuORF	REV__ENST00000404272.2_1_6:13949414-13949672:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.32861328125	2	523.32386	1044.63317	-0.47554	-0.00024886	0.1703	8.9123E-05	-0.30524	-0.00015974	523.3237891430659	79.457	2.0921	79.476	79.15	81.243	0.018677					122	50	3	0	0	0	0.33245	1	9824	9824		71.296	9.1883	1	1272800	+		25033	31899	17282	17320	28901	28901					0.1126349675369056
IFTQASVL	8	Unmodified	_IFTQASVL_					0	0	0			REV__nc|ENSG00000138613|Q8WW43-2|APH1B	REV__nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.752685546875	2	439.752736	877.490919	-0.031776	-1.3974E-05	0.39941	0.00017564	0.36763	0.00016167	439.7527511396081	23.477	1.0878	23.275	23.014	24.102	-0.20193					67	24	4	0	0	0	0.80469	1	937	937		58.782	0	1	1362200	+		25034	23865	17283	17321	28902	28902					0.04727284011528354
IFTSAVSPAAE	11	Unmodified	_IFTSAVSPAAE_					0	0	0		nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4	nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	MSMS	OPSCC_39_ClassI_Rep-2	2	546.7803344726562	2	546.782222	1091.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.066	1	31.078	30.578	31.578	0.011797								0	0	0	0.8	1	2030	2030		64.207	2.0999	1				25035	18092	17284	17322	28903	28903					0.007777155151643456
IFTSFSPLL	9	Unmodified	_IFTSFSPLL_					0	0	0			REV__ENST00000457408.6_3_7:44617991-44618162:-|nuORF	REV__ENST00000457408.6_3_7:44617991-44618162:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	512.7871704101562	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.217	1	71.228	70.728	71.728	0.010735								0	0	0	0.13191	1	8546	8546		85.359	3.0545	1		+		25036	32807	17285	17323	28904	28904					0.05324412734148609
IFTSFSPLL	9	Unmodified	_IFTSFSPLL_					0	0	0			REV__ENST00000457408.6_3_7:44617991-44618162:-|nuORF	REV__ENST00000457408.6_3_7:44617991-44618162:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	512.7869873046875	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.379	1	71.389	70.889	71.889	0.010735								0	0	0	0.13191	1	8571	8571		85.359	8.5128	1		+		25037	32807	17285	17323	28905	28905					0.05324412734148609
IFTSFSPLL	9	Unmodified	_IFTSFSPLL_					0	0	0			REV__ENST00000457408.6_3_7:44617991-44618162:-|nuORF	REV__ENST00000457408.6_3_7:44617991-44618162:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7882690429688	2	512.789318	1023.56408	0.12625	6.4738E-05	-4.3775	-0.0022447	-4.2512	-0.00218	512.7869369561231	71.396	1.045	71.121	70.743	71.788	-0.27509					52	24	3	0	0	0	0.22754	2	8324	8324;8337		85.359	5.9085	1	4723800	+		25038	32807	17285	17323	28906;28907	28906					0.05324412734148609
IFVECSVVK	9	Unmodified	_IFVECSVVK_					0	0	0			REV__ENST00000460933.5_1_3:133896885-133901879:-|nuORF	REV__ENST00000460933.5_1_3:133896885-133901879:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.279296875	2	512.280803	1022.54705	-0.11306	-5.7917E-05	-3.2932	-0.001687	-3.4062	-0.001745	512.2789642818011	58.225	0.49165	58.048	57.826	58.318	-0.17775					28	11	3	0	0	0	0.34489	1	6381	6381		69.628	9.5094	1	2989100	+		25039	32866	17286	17324	28908	28908					0.036681688566886805
IFVFANSAPL	10	Unmodified	_IFVFANSAPL_					0	0	0			REV__ENST00000550608.1_1_12:56114968-56115732:+|nuORF	REV__ENST00000550608.1_1_12:56114968-56115732:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.7997436523438	2	539.800217	1077.58588	-0.44014	-0.00023759	0.87529	0.00047248	0.43515	0.00023489	539.8003191670888	68.327	0.88258	68.097	67.715	68.598	-0.23048					56	21	4	0	0	0	0.40067	1	7879	7879		98.629	5.4339	1	3290900	+		25040	23545	17287	17325	28909	28909					0.05019217482708882
IFVFVQPLN	9	Unmodified	_IFVFVQPLN_					0	0	0			REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.863037109375	2	538.810585	1075.60662	-1.6058	-0.0008652	1.0774	0.00058052	-0.52835	-0.00028468	538.8111024208836	79.859	0.88155	79.687	79.399	80.28	-0.17226					37	20	2	0	0	0	0.024466	1	9946	9946		33.516	0	1	261580	+		25041	34907	17288	17326	28910	28910					0.07183807862384128
IFVFVQPLN	9	Unmodified	_IFVFVQPLN_					0	0	0			REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.8631591796875	2	538.810585	1075.60662	-1.0219	-0.00055059	0.58241	0.00031381	-0.43945	-0.00023678	538.8108263479892	79.672	0.79448	79.692	79.436	80.231	0.020432					33	18	2	0	0	0	0.024487	1	9883	9883		40.573	1.7665	1	221530	+		25042	34907	17288	17326	28911	28911					0.07183807862384128
IFVGAESLFL	10	Unmodified	_IFVGAESLFL_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3092651367188	2	548.307875	1094.6012	-0.56933	-0.00031217	0.08789	4.8191E-05	-0.48144	-0.00026398	548.307774593908	101.61	1.8886	101.61	100.99	102.88	0					101	43	4	0	0	0	0.60134	1	13040	13040		76.847	8.3619	1	2686600			25043	2445	17289	17327	28912	28912					0.05768084279884533
IFVGAESLFL	10	Unmodified	_IFVGAESLFL_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3096313476562	2	548.307875	1094.6012	-0.34826	-0.00019095	0.045134	2.4748E-05	-0.30312	-0.00016621	548.30777302576	101.66	1.8008	101.65	101.06	102.86	-0.0054474					102	41	4	0	0	0	0.72219	1	12980	12980		65.803	2.4969	1	3111100			25044	2445	17289	17327	28913	28913					0.05768084279884533
IFVGLKSVLSD	11	Unmodified	_IFVGLKSVLSD_					0	0	0		chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|61	chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|61	chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|61	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0292	1	11569	11569		30.318	2.2362	1	17343000			25045	290	17290	17328	28914	28914					0.09415427371436635
IFVGLTYSA	9	Unmodified	_IFVGLTYSA_					0	0	0			REV__ENSG00000105963|ENST00000265846|ADAP1	REV__ENSG00000105963|ENST00000265846|ADAP1	MSMS	OPSCC_39_ClassI_Rep-2	2	485.76483154296875	2	485.765843	969.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.215	1	99.225	98.725	99.725	0.010231								0	0	0	0.51175	1	12647	12647		51.335	3.4199	1		+		25046	21579	17291	17329	28915	28915					0.031155531829767824
IFVHSFSI	8	Unmodified	_IFVHSFSI_					0	0	0			REV__ENST00000473258.1_1_2:238233419-238234407:-|nuORF	REV__ENST00000473258.1_1_2:238233419-238234407:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.79754638671875	2	475.260728	948.506903	-1.0416	-0.00049501	-0.021265	-1.0106E-05	-1.0628	-0.00050512	475.2607595698276	33.421	1.1012	33.256	32.998	34.099	-0.16565					50	27	3	0	0	0	0.027866	1	2329	2329		52.299	17.098	1	828800	+		25047	33229	17292	17330	28916	28916					0.030589902484166487
IFVHSFSI	8	Unmodified	_IFVHSFSI_					0	0	0			REV__ENST00000473258.1_1_2:238233419-238234407:-|nuORF	REV__ENST00000473258.1_1_2:238233419-238234407:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	475.260728	948.506903	0.13518	6.4246E-05	-1.1659	-0.00055409	-1.0307	-0.00048985	475.2600431762848	33.524	0.87991	33.293	32.997	33.876	-0.23107	0.018362	-0.00046542	NaN	52.299	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	998830	+		25048	33229	17292	17330							0.030589902484166487
IFVHSFSI	8	Unmodified	_IFVHSFSI_					0	0	0			REV__ENST00000473258.1_1_2:238233419-238234407:-|nuORF	REV__ENST00000473258.1_1_2:238233419-238234407:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.260728	948.506903	-0.32155	-0.00015282	-0.66709	-0.00031704	-0.98865	-0.00046987	475.2603479528092	33.476	0.70049	33.276	33.056	33.756	-0.20019	0.00092328	8.6775E-06	NaN	52.299	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121200	+		25049	33229	17292	17330							0.030589902484166487
IFVKSLQSV	9	Unmodified	_IFVKSLQSV_					0	0	0		nc|ENSG00000131044|Q3SXZ7-2|TTLL9;ENSG00000131044|ENST00000535842|TTLL9	nc|ENSG00000131044|Q3SXZ7-2|TTLL9	nc|ENSG00000131044|Q3SXZ7-2|TTLL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.8084716796875	2	510.808042	1019.60153	-0.31752	-0.00016219	-0.15519	-7.9273E-05	-0.47271	-0.00024146	510.8077039848614	68.344	0.91464	68.344	68.102	69.016	0					66	23	4	0	0	0	0.043667	2	8198	8186;8198		131.03	7.8233	1	2746400			25050	4489	17293	17331	28917;28918	28918					0.09251503999757915
IFVKSLQSV	9	Unmodified	_IFVKSLQSV_					0	0	0		nc|ENSG00000131044|Q3SXZ7-2|TTLL9;ENSG00000131044|ENST00000535842|TTLL9	nc|ENSG00000131044|Q3SXZ7-2|TTLL9	nc|ENSG00000131044|Q3SXZ7-2|TTLL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.8085021972656	2	510.808042	1019.60153	0.081967	4.1869E-05	-0.4516	-0.00023068	-0.36963	-0.00018881	510.807595949295	68.437	1.0142	68.456	68.198	69.212	0.018913					65	26	4	0	0	0	0.043667	1	8127	8127		131.03	7.8233	1	2809000			25051	4489	17293	17331	28919	28919					0.09251503999757915
IFVKSWSPD	9	Unmodified	_IFVKSWSPD_					0	0	0		nc|ENSG00000236320|P0C7P3-2|SLFN14;ENSG00000236320|ENST00000674182|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.800048828125	2	539.782025	1077.5495	0.095774	5.1697E-05	0.72508	0.00039139	0.82086	0.00044308	540.2816399867157	68.435	0.64269	68.193	67.747	68.39	-0.24278					33	15	4	0	0	0	0.024292	1	7901	7901		40.778	0	1	237550			25052	10738	17294	17332	28920	28920					0.013823405859966442
IFVLFAKI	8	Unmodified	_IFVLFAKI_					0	0	0		ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7922668457031	2	475.807314	949.600075	0.42392	0.0002017	-1.2375	-0.00058882	-0.8136	-0.00038712	475.8066877975541	50.096	0.40044	50.096	49.842	50.242	0					20	11	3	0	0	0	0.027866	1	5193	5193		57.453	2.688	1	327060			25053	12385	17295	17333	28921	28921					0.12325914701648344
IFVLGMPVV	9	Unmodified	_IFVLGMPVV_					0	0	0			REV__ENSG00000196184|ENST00000423932|OR10J1	REV__ENSG00000196184|ENST00000423932|OR10J1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79229736328125	2	487.790807	973.56706	0.43895	0.00021412	1.9929	0.00097213	2.4319	0.0011862	487.7917661397378	78.47	1.6991	78.278	77.933	79.632	-0.1921					129	40	5	0	0	0	0.80342	1	9659	9659		39.021	0.21535	1	10902000	+		25054	28141	17296	17334	28922	28922					0.0792196458729677
IFVNFMEP	8	Oxidation (M)	_IFVNFM(Oxidation (M))EP_		IFVNFM(1)EP		IFVNFM(60)EP	0	0	1		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525561.1_1_9:134008494-134010392:+|nuORF	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.74554443359375	2	506.744053	1011.47355	-0.53263	-0.00026991	4.0586	0.0020567	3.5259	0.0017867	506.7458978437604	82.012	0.94905	82.012	81.63	82.579	0					50	22	4	0	0	0	0.78609	1	10253	10253		60.294	11.083	1	1390800			25055	18248	17297	17335	28923	28923		566			-0.03172379585782892
IFVNFMEP	8	Oxidation (M)	_IFVNFM(Oxidation (M))EP_					0	0	1		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525561.1_1_9:134008494-134010392:+|nuORF	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	506.744053	1011.47355	0.56345	0.00028553	2.7381	0.0013875	3.3016	0.0016731	506.74536865311615	82.137	0.87025	82.027	81.725	82.596	-0.11006	0.091132	-0.00076619	NaN	60.294	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1354200			25056	18248	17297	17335				566			-0.03172379585782892
IFVNFMEP	8	Oxidation (M)	_IFVNFM(Oxidation (M))EP_					0	0	1		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525561.1_1_9:134008494-134010392:+|nuORF	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.744053	1011.47355	0.47255	0.00023946	3.2268	0.0016351	3.6993	0.0018746	506.745276787272	82.102	0.73053	81.873	81.564	82.295	-0.2289	-0.063154	-0.00027099	NaN	60.294	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360730			25057	18248	17297	17335				566			-0.03172379585782892
IFVNFMEP	8	Oxidation (M)	_IFVNFM(Oxidation (M))EP_					0	0	1		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525561.1_1_9:134008494-134010392:+|nuORF	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.744053	1011.47355	0.027374	1.3872E-05	3.5821	0.0018152	3.6095	0.0018291	506.7454739721314	82.054	0.72673	81.861	81.461	82.188	-0.19334	-0.075268	8.9158E-05	NaN	60.294	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368740			25058	18248	17297	17335				566			-0.03172379585782892
IFVNFMEP	8	Oxidation (M)	_IFVNFM(Oxidation (M))EP_					0	0	1		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525561.1_1_9:134008494-134010392:+|nuORF	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.744053	1011.47355	-0.9423	-0.0004775	4.4254	0.0022425	3.4831	0.001765	506.74605602610006	82.047	0.73051	81.907	81.486	82.216	-0.14014	-0.028733	0.00094378	NaN	60.294	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317580			25059	18248	17297	17335				566			-0.03172379585782892
IFVPSYIN	8	Unmodified	_IFVPSYIN_					0	0	0		nc|ENSG00000170509|Q7Z5P4-2|HSD17B13;ENSG00000170509|ENST00000328546|HSD17B13	nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.79266357421875	2	476.760561	951.506569	-0.60462	-0.00028826	-3.3988	-0.0016204	-4.0034	-0.0019087	476.75879300968717	55.818	0.5385	55.916	55.707	56.246	0.097897					22	14	2	0	0	0	0.027866	1	6164	6164		60.294	12.378	1	326710			25060	8049	17298	17336	28924	28924					0.028875705285599906
IFVTLFPAGL	10	Unmodified	_IFVTLFPAGL_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7916259765625	2	539.320786	1076.62702	-0.20739	-0.00011185	-4.1057	-0.0022143	-4.3131	-0.0023262	539.3183619801032	73.016	0.8022	72.735	72.465	73.267	-0.28124					38	19	3	0	0	0	0.03519	1	8894	8894		63.306	17.354	1	618160	+		25061	21437	17299	17337	28925	28925					0.0917697852216861
IFVTLFPAGL	10	Unmodified	_IFVTLFPAGL_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.320786	1076.62702	-0.55029	-0.00029678	-3.8932	-0.0020997	-4.4435	-0.0023965	539.318528174071	72.662	0.76843	72.662	72.414	73.182	0	-0.052537	0.00021133	NaN	73.975	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580470	+		25062	21437	17299	17337							0.0917697852216861
IFVVTEPLY	9	Unmodified	_IFVVTEPLY_					0	0	0			REV__ENSG00000172487|ENST00000533152|OR8J1	REV__ENSG00000172487|ENST00000533152|OR8J1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8035888671875	2	540.802426	1079.5903	0.2886	0.00015607	-0.063554	-3.437E-05	0.22504	0.0001217	540.802076158918	99.463	0.39751	99.328	99.157	99.554	-0.13526					16	9	2	0	0	0	0.78069	1	12319	12319		40.573	0	1	91225	+		25063	26677	17300	17338	28926	28926					0.053686819056110835
IFVVYPVF	8	Unmodified	_IFVVYPVF_					0	0	0			REV__nc|ENSG00000108852|Q14168-4|MPP2	REV__nc|ENSG00000108852|Q14168-4|MPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.28533935546875	2	492.283672	982.552791	0.12845	6.3233E-05	3.2855	0.0016174	3.414	0.0016807	492.2852440981204	93.282	0.93618	93.282	92.751	93.687	0					63	21	4	0	0	0	1.0241	1	11825	11825		33.493	0.68056	1	2432500	+		25064	36557	17301	17339	28927	28927					0.06081635430655297
IFVWPDLI	8	Unmodified	_IFVWPDLI_					0	0	0			REV__ENSG00000160013|ENST00000291294|PTGIR	REV__ENSG00000160013|ENST00000291294|PTGIR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.79705810546875	2	501.786579	1001.5586	-0.30706	-0.00015408	-1.1228	-0.0005634	-1.4299	-0.00071748	502.2876972315212	93.343	0.30606	93.199	93.089	93.395	-0.1441					8	6	2	0	0	0	0.027866	1	11464	11464		26.796	2.5934	1	33553	+		25065	25285	17302	17340	28928	28928					0.057887339423245976
IFWAVFVISS	10	Unmodified	_IFWAVFVISS_					0	0	0		ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.2669677734375	2	584.823692	1167.63283	-0.84159	-0.00049218	-2.7391	-0.0016019	-3.5806	-0.002094	584.8219770361717	57.281	0.50991	57.113	56.896	57.406	-0.1672					32	13	3	0	0	0	0.03519	1	6224	6224		38.806	17.969	1	520920			25066	8162	17303	17341	28929	28929					0.055720770338666625
IFWAVFVISS	10	Unmodified	_IFWAVFVISS_					0	0	0		ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	584.823692	1167.63283	-0.54355	-0.00031788	-3.2368	-0.0018929	-3.7803	-0.0022108	584.8217627380294	57.317	0.46704	57.114	56.891	57.358	-0.20209	-0.016812	-0.00035745	NaN	30.504	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557130			25067	8162	17303	17341							0.055720770338666625
IFWAYLIL	8	Unmodified	_IFWAYLIL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2898559570312	2	519.804771	1037.59499	-1.076	-0.00055933	3.2328	0.0016804	2.1567	0.0011211	519.8062988664004	37.7	0.99139	37.617	36.959	37.95	-0.082512					53	27	4	0	0	0	0.027866	1	2998	2998		24.504	0	1	890040			25068	5648	17304	17342	28930	28930					0.07769610839045527
IFYCLQDI	8	Unmodified	_IFYCLQDI_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;ENST00000486261.5_1_7:91865725-91870409:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7664489746094	2	507.751879	1013.4892	-0.53039	-0.00026931	-1.62	-0.00082255	-2.1504	-0.0010919	508.25292369481895	36.136	0.51896	36.174	35.855	36.374	0.038044					21	14	2	0	0	0	0.027866	1	2790	2790		50.025	0	1	216290			25069	724	17305	17343	28931	28931					-0.017000930687345317
IFYCYRVN	8	Unmodified	_IFYCYRVN_					0	0	0		ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2	ENSG00000163513|ENST00000295754|TGFBR2	ENSG00000163513|ENST00000295754|TGFBR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.296630859375	2	539.262945	1076.51134	-1.2854	-0.00069314	4.426	0.0023868	3.1407	0.0016937	539.2652707620049	58.148	0.4629	57.973	57.825	58.287	-0.1749					25	12	3	0	0	0	0.027866	1	6580	6580		20.482	0	1	964050			25070	7092	17306	17344	28932	28932					-0.02385868600322283
IFYENLLL	8	Unmodified	_IFYENLLL_					0	0	0		nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-2|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	nc|ENSG00000118762|Q13563-5|PKD2	nc|ENSG00000118762|Q13563-5|PKD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.78759765625	2	512.789318	1023.56408	-0.042215	-2.1648E-05	-4.3284	-0.0022196	-4.3707	-0.0022412	512.7870450466863	71.371	0.99565	71.109	70.602	71.598	-0.26199					42	23	2	0	0	0	0.78609	1	8366	8366		60.294	2.4827	1	6164100			25071	3703	17307	17345	28933	28933					0.05324412734148609
IFYFHLALF	9	Unmodified	_IFYFHLALF_					0	0	0			REV__ENST00000367942.3_1_1:161930836-161931151:+|nuORF	REV__ENST00000367942.3_1_1:161930836-161931151:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.288818359375	2	585.820953	1169.62735	-0.066963	-3.9228E-05	-0.96103	-0.00056299	-1.028	-0.00060222	585.8204521926281	50.885	0.11343	50.704	50.61	50.723	-0.18071					4	2	2	0	0	0	0.024289	1	5193	5193		60.404	16.287	1	95196	+		25072	31036	17308	17346	28934	28934					0.04932398242021918
IFYLSLRPH	9	Unmodified	_IFYLSLRPH_					0	0	0		ENST00000330123.9_1_19:52618131-52618170:-|nuORF	ENST00000330123.9_1_19:52618131-52618170:-|nuORF	ENST00000330123.9_1_19:52618131-52618170:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.3604125976562	2	573.326934	1144.63931	0.19888	0.00011402	-2.0065	-0.0011504	-1.8077	-0.0010364	573.325216282861	52.766	0.85309	52.619	52.057	52.91	-0.14723					41	21	3	0	0	0	0.024294	1	5621	5621		55.504	2.1528	1	650720			25073	12326	17309	17347	28935	28935					0.07278014985217851
IFYNHTHG	8	Unmodified	_IFYNHTHG_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7344970703125	2	494.735409	987.456264	-0.025058	-1.2397E-05	-1.0736	-0.00053115	-1.0987	-0.00054355	494.7347339992219	67.814	0.78055	67.576	67.289	68.07	-0.23814					50	18	4	0	0	0	0.93274	1	7825	7825		47.916	8.8941	1	2273500			25074	9045	17310	17348	28936	28936					-0.03796539076574845
IFYRALIFLI	10	Unmodified	_IFYRALIFLI_					0	0	0		ENST00000290795.7_1_1:46126251-46126365:-|nuORF	ENST00000290795.7_1_1:46126251-46126365:-|nuORF	ENST00000290795.7_1_1:46126251-46126365:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	635.3865356445312	2	634.891909	1267.76927	-0.77889	-0.00049451	1.483	0.00094155	0.70412	0.00044704	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	1.1267	1	13039	13039		29.15	4.9468	1	1853200			25075	11786	17311	17349	28937	28937					0.14609191264366927
IFYRDHFGG	9	Unmodified	_IFYRDHFGG_					0	0	0			REV__ENST00000544958.5_1_11:72404190-72406109:-|nuORF	REV__ENST00000544958.5_1_11:72404190-72406109:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.2722778320312	2	556.269616	1110.52468	-0.0065902	-3.6659E-06	1.0114	0.00056262	1.0048	0.00055896	556.2700584385974	95.273	0.72858	95.273	94.963	95.691	0					33	16	3	0	0	0	0.024477	1	12189	12189		27.882	0	1	302330	+		25076	27872	17312	17350	28938	28938					-0.026162944967154544
IFYRRDDNKD	10	Unmodified	_IFYRRDDNKD_					0	0	0		ENST00000506524.5_1_5:145862104-145889630:+|nuORF	ENST00000506524.5_1_5:145862104-145889630:+|nuORF	ENST00000506524.5_1_5:145862104-145889630:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2352294921875	3	447.889714	1340.64731	-0.2695	-0.00012071	-2.4045	-0.0010769	-2.674	-0.0011976	447.88868835374086	26.156	0.70193	26.133	25.909	26.611	-0.023087					25	16	2	0	0	0	0.03519	1	1357	1357		23.378	5.5448	1	233040			25077	15745	17313	17351	28939	28939					-0.00938502555982268
IFYVNRLGY	9	Unmodified	_IFYVNRLGY_					0	0	0		ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	ENSG00000106302|ENST00000223026|HYAL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.8475341796875	2	572.811116	1143.60768	0.12782	7.3214E-05	2.6236	0.0015028	2.7514	0.001576	572.8125076492366	18.655	0.29362	18.524	18.352	18.645	-0.13147					8	5	2	0	0	0	0.024541	1	320	320		26.796	0	1	32953			25078	2774	17314	17352	28940	28940					0.04162022231298579
IFYVVVHHL	9	Unmodified	_IFYVVVHHL_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3-1|USP25	REV__nc|ENSG00000155313|Q9UHP3-1|USP25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2763671875	2	563.824027	1125.6335	-0.9071	-0.00051145	3.3207	0.0018723	2.4136	0.0013609	563.8258112287261	82.291	0.64944	82.151	81.785	82.434	-0.14014					27	14	2	0	0	0	0.024289	1	9879	9879		60.404	22.592	1	142900	+		25079	25002	17315	17353	28941	28941					0.07570916473582656
IGAALPRSI	9	Unmodified	_IGAALPRSI_					0	0	0			REV__DHX9|p.S1142L|1|0.32|ENSG00000135829|chr1:182884777-182884777|C/T|missense_variant	REV__DHX9|p.S1142L|1|0.32|ENSG00000135829|chr1:182884777-182884777|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2685852050781	2	449.279452	896.544351	-0.023537	-1.0575E-05	-0.30516	-0.0001371	-0.3287	-0.00014768	449.27924968662467	49.291	0.95092	49.138	48.792	49.743	-0.15276					68	25	4	0	0	0	0.024021	1	5048	5048		25.574	4.6271	1	3983100	+		25080	19674	17316	17354	28942	28942					0.09194081514044683
IGAALPRSI	9	Unmodified	_IGAALPRSI_					0	0	0			REV__DHX9|p.S1142L|1|0.32|ENSG00000135829|chr1:182884777-182884777|C/T|missense_variant	REV__DHX9|p.S1142L|1|0.32|ENSG00000135829|chr1:182884777-182884777|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	449.279452	896.544351	-0.080397	-3.6121E-05	-1.5698	-0.00070527	-1.6502	-0.00074139	449.27844123641455	49.214	0.41722	49.032	48.773	49.19	-0.18206	-0.035836	-0.0013209	NaN	25.574	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79465	+		25081	19674	17316	17354							0.09194081514044683
IGACMARR	8	Unmodified	_IGACMARR_					0	0	0			REV__ENSG00000166856|ENST00000300098|GPR182	REV__ENSG00000166856|ENST00000300098|GPR182	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2462158203125	2	439.228382	876.442211	-0.61608	-0.0002706	-4.4541	-0.0019564	-5.0701	-0.002227	439.226366479921	28.108	0.93557	28.108	27.884	28.82	0					33	22	2	0	0	0	0.027866	1	1610	1610		8.2313	0	1	82561	+		25082	26066	17317	17355	28943	28943					-0.0009523110087457098
IGAEFSTE	8	Unmodified	_IGAEFSTE_					0	0	0			REV__nc|ENSG00000110881|P78348-3|ASIC1	REV__nc|ENSG00000110881|P78348-3|ASIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2539367675781	2	427.200533	852.386513	-0.604	-0.00025803	1.6819	0.00071852	1.0779	0.00046049	427.2019442721216	23.308	0.65835	23.247	23.069	23.727	-0.060862					16	15	2	0	0	0	0.027866	1	919	919		12.959	0	1	61645	+		25083	36564	17318	17356	28944	28944					-0.04558462535862873
IGAEIAAGIPI	11	Unmodified	_IGAEIAAGIPI_					0	0	0			REV__ENSG00000187522|ENST00000378372|HSPA14	REV__ENSG00000187522|ENST00000378372|HSPA14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7850952148438	2	512.8055	1023.59645	-0.40272	-0.00020652	-2.8758	-0.0014747	-3.2785	-0.0016812	512.8061922738814	73.185	0.43123	73.194	72.859	73.29	0.0096512					16	10	2	0	0	0	0.024793	1	8859	8859		47.657	16.128	1	60301	+		25084	27938	17319	17357	28945	28945					0.08559200137142398
IGAFGYMECS	10	Unmodified	_IGAFGYMECS_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2635498046875	2	539.222628	1076.4307	-0.81315	-0.00043847	4.0131	0.0021639	3.1999	0.0017255	539.2242087872894	69.803	0.54411	69.535	69.287	69.831	-0.26725					19	12	2	0	0	0	0.03519	1	8074	8074		53.351	7.3792	1	49994			25085	1364	17320	17358	28946	28946					-0.10445517705534257
IGAGATAVGL	10	Unmodified	_IGAGATAVGL_					0	0	0		ENST00000518780.1_1_8:1704216-1707628:+|nuORF;ENST00000517514.1_1_8:1706422-1707628:+|nuORF	ENST00000518780.1_1_8:1704216-1707628:+|nuORF	ENST00000518780.1_1_8:1704216-1707628:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.25830078125	2	415.242535	828.470518	-1.2566	-0.00052179	0.39958	0.00016592	-0.85701	-0.00035587	415.2426335137044	38.943	0.56767	38.778	38.476	39.044	-0.16458					26	15	2	0	0	0	0.03519	1	3245	3245		19.36	10.538	1	919840			25086	15912	17321	17359	28947	28947					0.049421133517171256
IGALRRAL	8	Unmodified	_IGALRRAL_					0	0	0		nc|ENSG00000275183|Q96B70|LENG9;ENSG00000275183|ENST00000611161|LENG9	nc|ENSG00000275183|Q96B70|LENG9	nc|ENSG00000275183|Q96B70|LENG9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2876892089844	2	435.287611	868.56067	-0.14409	-6.272E-05	-0.3983	-0.00017337	-0.54239	-0.00023609	435.28744784642635	25.847	2.5229	25.677	25.163	27.686	-0.17078					136	63	5	0	0	0	0.94001	1	1258	1258		46.766	2.2354	1	17898000			25087	11037	17322	17360	28948	28948					0.12113207470781617
IGANNILI	8	Unmodified	_IGANNILI_					0	0	0			REV__ENSG00000170786|ENST00000303749|SDR16C5	REV__ENSG00000170786|ENST00000303749|SDR16C5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2298278808594	2	414.252903	826.491253	-0.0090985	-3.7691E-06	0.029288	1.2133E-05	0.02019	8.3636E-06	414.25271969247456	27.117	0.40352	27.104	26.911	27.314	-0.012983					20	10	3	0	0	0	0.027866	1	1433	1433		21.702	0	1	117690	+		25088	26504	17323	17361	28949	28949					0.07106703731381003
IGAQDPYCGW	10	Carbamidomethyl (C)	_IGAQDPYC(Carbamidomethyl (C))GW_	IGAQDPYC(1)GW		IGAQDPYC(64)GW		0	1	0		ENSG00000112902|ENST00000382496|SEMA5A;SEMA5A|p.P873Rfs*86|1|0.15|ENSG00000112902|chr5:9054158-9054158|G/-|frameshift_variant	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.7522583007812	2	583.750398	1165.48624	-0.56743	-0.00033124	3.7985	0.0022174	3.231	0.0018861	583.7524398106203	74.499	0.79935	74.24	73.944	74.743	-0.25887					44	18	3	0	0	0	0.74632	1	9096	9096		64.207	7.7735	1	1701800			25089	3249	17324	17362	28950	28950	41				-0.08987968193559936
IGAQEAAGSI	10	Unmodified	_IGAQEAAGSI_					0	0	0			REV__ENST00000397559.3_1_5:32100984-32108238:+|nuORF	REV__ENST00000397559.3_1_5:32100984-32108238:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.77655029296875	2	458.740357	915.46616	-0.088344	-4.0527E-05	0.57255	0.00026265	0.4842	0.00022212	458.74047849077635	47.065	0.80034	47.124	46.623	47.423	0.059093					35	21	2	0	0	0	0.03519	1	4556	4556		69.628	16.691	1	143770	+		25090	31776	17325	17363	28951	28951					0.005046041381433497
IGAQQARPS	9	Unmodified	_IGAQQARPS_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2537841796875	2	464.253966	926.493378	0.040288	1.8704E-05	-0.56771	-0.00026356	-0.52742	-0.00024486	464.253647614494	78.531	1.9862	78.276	77.955	79.941	-0.25471					73	46	2	0	0	0	0.76818	1	9367	9367		41.427	4.3981	1	2782100	+		25091	23610	17326	17364	28952	28952					0.027191324691784757
IGARDWTEEWL	11	Unmodified	_IGARDWTEEWL_					0	0	0		ENST00000462125.5_1_9:97683622-97717464:+|nuORF;ENST00000488186.5_1_9:97686277-97696849:+|nuORF;ENST00000473778.5_1_9:97683622-97694033:+|nuORF;nc|ENSG00000148120|Q8N6M6-3|AOPEP;ENSG00000148120|ENST00000375315|AOPEP	ENST00000462125.5_1_9:97683622-97717464:+|nuORF	ENST00000462125.5_1_9:97683622-97717464:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2685241699219	3	459.226215	1374.65681	-0.37142	-0.00017057	-1.0311	-0.00047349	-1.4025	-0.00064405	459.22518085547017	47.953	0.22222	47.856	47.78	48.002	-0.097553					9	5	3	0	0	0	0.024759	1	4751	4751		12.957	0	1	80857			25092	6004	17327	17365	28953	28953					-0.015527342704217517
IGARSLSVL	9	Unmodified	_IGARSLSVL_					0	0	0		ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1	ENST00000469328.5_1_7:128033063-128040541:-|nuORF	ENST00000469328.5_1_7:128033063-128040541:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.28521728515625	2	458.284734	914.554916	1.8363	0.00084157	-1.6283	-0.00074622	0.20805	9.5344E-05	458.2838674112301	59.07	1.0178	58.883	58.611	59.629	-0.18705					69	27	4	0	0	0	0.17822	1	6715	6715		93.195	0	1	5668800			25093	2782	17328	17366	28954	28954					0.09422064168461475
IGARSLSVL	9	Unmodified	_IGARSLSVL_					0	0	0		ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1	ENST00000469328.5_1_7:128033063-128040541:-|nuORF	ENST00000469328.5_1_7:128033063-128040541:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2850036621094	2	458.284734	914.554916	0.77934	0.00035716	-0.59285	-0.00027169	0.1865	8.5468E-05	458.2843559382004	58.779	1.1363	58.87	58.333	59.469	0.091217					76	30	4	0	0	0	0.17822	1	6598	6598		93.195	0	1	5457700			25094	2782	17328	17366	28955	28955					0.09422064168461475
IGAYIAGQIL	10	Unmodified	_IGAYIAGQIL_					0	0	0			REV__ENSG00000179213|ENST00000601727|SIGLECL1	REV__ENSG00000179213|ENST00000601727|SIGLECL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.77459716796875	2	509.800217	1017.58588	-1.2831	-0.0006541	4.4216	0.0022541	3.1385	0.0016	509.80255094412234	44.585	0.40651	44.436	44.256	44.662	-0.1488					14	10	2	0	0	0	0.03519	1	4234	4234		40.573	0	1	95013	+		25095	27246	17329	17367	28956	28956					0.07779217482732292
IGCALAVPAL	10	Unmodified	_IGCALAVPAL_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2722473144531	2	464.270238	926.525924	0.56497	0.0002623	2.9535	0.0013712	3.5184	0.0016335	464.27169400340784	19.391	0.85992	19.391	19.168	20.028	0					50	17	5	0	0	0	0.88914	1	395	395		54.765	1.4132	1	7141300	+		25096	28823	17330	17368	28957	28957					0.05972203547821664
IGCLQKLL	8	Unmodified	_IGCLQKLL_					0	0	0		ENSG00000188976|ENST00000327044|NOC2L;ENST00000487214.1_1_1:889839-894659:-|nuORF	ENSG00000188976|ENST00000327044|NOC2L	ENSG00000188976|ENST00000327044|NOC2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2875061035156	2	444.272781	886.531009	-0.0016018	-7.1162E-07	-3.5595	-0.0015814	-3.5611	-0.0015821	444.27121790657526	18.198	0.44587	17.994	17.816	18.262	-0.20371					9	8	2	0	0	0	0.027866	1	267	267		29.842	0	1	9964.4			25097	9769	17331	17369	28958	28958					0.08320507410439859
IGDDPIPE	8	Unmodified	_IGDDPIPE_					0	0	0			REV__ENSG00000186141|ENST00000334163|POLR3C	REV__ENSG00000186141|ENST00000334163|POLR3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7579345703125	2	428.208358	854.402163	-0.34736	-0.00014874	3.1747	0.0013594	2.8273	0.0012107	428.20946720370654	41.291	0.58257	41.061	40.771	41.354	-0.23029					22	14	3	0	0	0	0.027866	1	3663	3663		42.474	0	1	175210	+		25098	27828	17332	17370	28959	28959					-0.030861760187917753
IGDFPLLLM	9	Oxidation (M)	_IGDFPLLLM(Oxidation (M))_		IGDFPLLLM(1)		IGDFPLLLM(68)	0	0	1		ENST00000490998.5_1_2:71302504-71303116:+|nuORF	ENST00000490998.5_1_2:71302504-71303116:+|nuORF	ENST00000490998.5_1_2:71302504-71303116:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7844848632812	2	517.783179	1033.5518	0.12283	6.3599E-05	3.3301	0.0017243	3.4529	0.0017879	517.7847515708484	72.104	0.93321	72.114	71.802	72.736	0.0097733					50	23	3	0	0	0	0.36105	1	8711	8711		68.485	15.548	1	2356700			25099	15448	17333	17371	28960	28960		520			0.036370529994655953
IGEADNQVVY	10	Unmodified	_IGEADNQVVY_					0	0	0		HFM1|p.D1035E|1|0.16|ENSG00000162669|chr1:91315850-91315850|G/T|missense_variant	HFM1|p.D1035E|1|0.16|ENSG00000162669|chr1:91315850-91315850|G/T|missense_variant	HFM1|p.D1035E|1|0.16|ENSG00000162669|chr1:91315850-91315850|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8316650390625	2	554.269478	1106.5244	-0.18891	-0.00010471	2.6819	0.0014865	2.493	0.0013818	554.2709611665068	48.439	0.17517	48.253	48.194	48.369	-0.18604					6	4	2	0	0	0	0.03519	1	4809	4809		30.318	17.506	1	211900			25100	17734	17334	17372	28961	28961					-0.024597590072289677
IGEDNPLSP	9	Unmodified	_IGEDNPLSP_					0	0	0			REV__nc|ENSG00000143514|Q13625-2|TP53BP2	REV__nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3290710449219	2	471.232364	940.450176	0.49033	0.00023106	3.7165	0.0017514	4.2069	0.0019824	471.2342756514284	22.878	0.60365	22.686	22.232	22.836	-0.19248					14	12	2	0	0	0	0.024374	1	812	812		58.782	25.266	1	16360	+		25101	24257	17335	17373	28962	28962					-0.022431020987710326
IGEITKALL	9	Unmodified	_IGEITKALL_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7353515625	2	479.302593	956.590633	-0.28211	-0.00013522	0.18819	9.02E-05	-0.093919	-4.5016E-05	479.3025687269925	60.498	0.83147	60.284	59.924	60.756	-0.21339					43	21	3	0	0	0	0.024021	1	6900	6900		40.778	11.608	1	717040	+		25102	21675	17336	17374	28963	28963					0.11060101625469088
IGEITKALL	9	Unmodified	_IGEITKALL_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.302593	956.590633	0.12807	6.1385E-05	-0.36384	-0.00017439	-0.23577	-0.00011301	479.3021683312865	60.841	0.50747	60.635	60.421	60.928	-0.20599	0.19617	-0.00079826	NaN	40.778	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285640	+		25103	21675	17336	17374							0.11060101625469088
IGEITKALL	9	Unmodified	_IGEITKALL_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.302593	956.590633	-1.0237	-0.00049064	1.2833	0.00061508	0.25961	0.00012443	479.3030362602623	60.715	0.55212	60.539	60.322	60.874	-0.1761	0.10006	0.00078068	NaN	40.778	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435740	+		25104	21675	17336	17374							0.11060101625469088
IGEITKALL	9	Unmodified	_IGEITKALL_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.302593	956.590633	-0.62118	-0.00029773	0.4217	0.00020212	-0.19948	-9.5609E-05	479.30256913395397	60.877	0.50808	60.624	60.463	60.971	-0.25373	0.18447	-4.5232E-05	NaN	40.778	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322120	+		25105	21675	17336	17374							0.11060101625469088
IGERLAPV	8	Unmodified	_IGERLAPV_					0	0	0			REV__ENST00000427741.5_1_3:2141284-2380878:+|nuORF	REV__ENST00000427741.5_1_3:2141284-2380878:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.7575378417969	2	427.758352	853.502152	0.06996	2.9926E-05	-0.089386	-3.8235E-05	-0.019425	-8.3094E-06	427.7582931903384	41.226	1.5359	41.09	40.488	42.024	-0.13553					95	40	4	0	0	0	0.59392	1	3652	3652		76.847	0	1	10095000	+		25106	32303	17337	17375	28964	28964					0.06954106105649771
IGERLAPV	8	Unmodified	_IGERLAPV_					0	0	0			REV__ENST00000427741.5_1_3:2141284-2380878:+|nuORF	REV__ENST00000427741.5_1_3:2141284-2380878:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.7564392089844	2	427.758352	853.502152	-0.20028	-8.5672E-05	0.11178	4.7815E-05	-0.088499	-3.7856E-05	427.75838374021447	41.473	1.5917	41.243	40.624	42.216	-0.23029					89	42	3	0	0	0	0.6536	1	3679	3679		71.296	10.324	1	9164000	+		25107	32303	17337	17375	28965	28965					0.06954106105649771
IGFAFGALYW	10	Unmodified	_IGFAFGALYW_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.277587890625	2	572.794935	1143.57532	0.22236	0.00012737	-4.147	-0.0023754	-3.9246	-0.002248	572.7925709942582	78.657	0.56039	78.425	78.176	78.736	-0.23141					16	12	2	0	0	0	0.03519	1	9399	9399		44.531	0.15388	1	163130			25108	1124	17338	17376	28966	28966					0.009272348282593157
IGFAFGALYW	10	Unmodified	_IGFAFGALYW_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.278564453125	2	572.794935	1143.57532	-0.0046977	-2.6908E-06	-4.0141	-0.0022993	-4.0188	-0.002302	572.792775075701	78.486	0.47504	78.33	78.17	78.645	-0.15591					17	10	3	0	0	0	0.03519	1	9374	9374		44.531	14.027	1	160480			25109	1124	17338	17376	28967	28967					0.009272348282593157
IGFELFEL	8	Unmodified	_IGFELFEL_					0	0	0			REV__ENST00000393241.8_2_11:94226037-94226920:-|nuORF	REV__ENST00000393241.8_2_11:94226037-94226920:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.2586364746094	2	484.260394	966.506234	-0.64457	-0.00031214	-3.5012	-0.0016955	-4.1458	-0.0020076	484.25841979100005	27.377	0.59838	27.209	26.971	27.57	-0.16816					38	13	4	0	0	0	0.65272	1	1515	1515		71.378	4.9486	1	2568100	+		25110	31637	17339	17377	28968	28968					0.021641508087100192
IGFFVSNYI	9	Unmodified	_IGFFVSNYI_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2764282226562	2	530.279118	1058.54368	-0.59152	-0.00031367	-2.9509	-0.0015648	-3.5425	-0.0018785	530.277414161755	57.739	2.372	57.739	57.148	59.52	0					154	63	4	0	0	0	0.20967	4	6505	6505;6517;6529;6542		87.754	8.0417	1	56702000	+		25111	36566	17340	17378	28969;28970;28971;28972	28969					0.01675242074338712
IGFFVSNYI	9	Unmodified	_IGFFVSNYI_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2777709960938	2	530.279118	1058.54368	-0.70493	-0.00037381	-2.744	-0.0014551	-3.449	-0.0018289	530.2775091347208	57.991	2.1849	57.816	57.268	59.453	-0.1749					150	59	4	0	0	0	0.20967	1	6520	6520		87.754	8.0417	1	41030000	+		25112	36566	17340	17378	28973	28973					0.01675242074338712
IGFFVSNYI	9	Unmodified	_IGFFVSNYI_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2763061523438	2	530.279118	1058.54368	-0.6998	-0.00037109	-2.9445	-0.0015614	-3.6443	-0.0019325	530.2774321977151	57.615	2.1957	57.71	57.165	59.361	0.095306					151	59	4	0	0	0	0.20967	1	6416	6416		87.754	8.0417	1	55694000	+		25113	36566	17340	17378	28974	28974					0.01675242074338712
IGFFVSNYI	9	Unmodified	_IGFFVSNYI_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.27734375	2	530.279118	1058.54368	-0.441	-0.00023385	-3.3115	-0.001756	-3.7525	-0.0019899	530.2771948294628	57.917	0.94466	57.727	57.148	58.092	-0.19017					72	24	5	0	0	0	0.20967	1	6369	6369		87.754	12.711	1	20667000	+		25114	36566	17340	17378	28975	28975					0.01675242074338712
IGFILRSLL	9	Unmodified	_IGFILRSLL_					0	0	0		ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2996215820312	2	516.334227	1030.6539	-0.35812	-0.00018491	-0.25634	-0.00013236	-0.61445	-0.00031726	516.332892432577	104.17	0.40132	104.16	103.94	104.34	-0.0032196					16	9	3	0	0	0	0.023635	1	13307	13307		76.774	29.117	1	39201			25115	2983	17341	17379	28976	28976					0.13980087133381858
IGGGAKQPK	9	Unmodified	_IGGGAKQPK_					0	0	0		nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.256591796875	2	428.255977	854.497401	-1.0349	-0.00044318	0.69463	0.00029748	-0.34022	-0.0001457	428.2562786282324	44.493	1.0635	44.493	44.183	45.246	0					85	30	4	0	0	0	0.52323	2	4267	4243;4267		57.811	9.5523	1	13449000			25116	9311	17342	17380	28977;28978	28978					0.0643322196290228
IGGGAKQPK	9	Unmodified	_IGGGAKQPK_					0	0	0		nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2560729980469	2	428.255977	854.497401	-1.1586	-0.00049618	0.88612	0.00037949	-0.27249	-0.0001167	428.25635659020503	44.654	1.0553	44.505	44.158	45.214	-0.1488					82	30	4	0	0	0	0.55828	3	4249	4249;4261;4273		55.504	6.2934	1	13976000			25117	9311	17342	17380	28979;28980;28981	28979					0.0643322196290228
IGGGAKQPK	9	Unmodified	_IGGGAKQPK_					0	0	0		nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.25628662109375	2	428.255977	854.497401	0.01273	5.4517E-06	-0.25974	-0.00011123	-0.24701	-0.00010578	428.2558642379249	44.491	1.0625	44.528	44.241	45.304	0.036903					84	30	5	0	0	0	0.40179	3	4204	4183;4204;4217		65.803	12.452	1	13284000			25118	9311	17342	17380	28982;28983;28984	28983					0.0643322196290228
IGGKCQLVAY	10	Unmodified	_IGGKCQLVAY_					0	0	0		ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2820434570312	2	526.283877	1050.5532	0.33262	0.00017505	-3.8876	-0.002046	-3.555	-0.0018709	526.2815619081739	63.388	1.1218	63.13	62.835	63.956	-0.25824					61	28	4	0	0	0	1.0271	1	7135	7135		42.396	8.2236	1	2881800			25119	12653	17343	17381	28985	28985					0.029946870881985888
IGGKEASTE	9	Unmodified	_IGGKEASTE_					0	0	0			REV__ENST00000481831.1_1_1:160187794-160187962:-|nuORF	REV__ENST00000481831.1_1_1:160187794-160187962:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	445.6361999511719	2	446.224539	890.434526	-0.31754	-0.00014169	0.66318	0.00029593	0.34565	0.00015424	446.2247230998783	38.896	0.60816	38.797	38.591	39.199	-0.098755					40	16	3	0	0	0	0.024381	1	3304	3304		29.15	0	1	1134500	+		25120	33463	17344	17382	28986	28986					-0.015073886158006644
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7798156738281	2	434.778754	867.542954	0.10241	4.4528E-05	3.2386	0.0014081	3.3411	0.0014526	434.7800312029487	38.873	1.0912	38.873	38.68	39.771	0					115	30	4	0	0	0	0.88411	1	3329	3329		33.516	0	1	4148000	+		25121	21003	17345	17383	28987	28987					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.78045654296875	2	434.778754	867.542954	0.45067	0.00019594	2.8989	0.0012604	3.3496	0.0014563	434.7798992749092	40.428	1.9181	40.428	39.696	41.615	0					185	53	4	0	0	0	0.88411	1	3560	3560		33.516	1.5607	1	6987300	+		25122	21003	17345	17383	28988	28988					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7799987792969	2	434.778754	867.542954	-0.63702	-0.00027696	4.1615	0.0018093	3.5245	0.0015324	434.7804586001769	39.007	1.1435	38.908	38.737	39.88	-0.098755					106	31	4	0	0	0	0.75282	1	3347	3347		42.474	8.9589	1	3134400	+		25123	21003	17345	17383	28989	28989					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.77978515625	2	434.778754	867.542954	-0.025772	-1.1205E-05	3.413	0.0014839	3.3872	0.0014727	434.78012510207304	40.646	1.8414	40.669	40.013	41.854	0.023006					178	51	4	0	0	0	0.75282	3	3478	3478;3516;3527		42.474	7.057	1	8357300	+		25124	21003	17345	17383	28990;28991;28992	28990					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7802734375	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	0.75282	1	2824	2824		42.474	5.446	1	8541000	+		25125	21003	17345	17383	28993	28993					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.78033447265625	2	434.778754	867.542954	-0.73827	-0.00032098	3.2902	0.0014305	2.5519	0.0011095	434.7800360405225	44.094	0.96561	43.989	43.701	44.667	-0.10468					85	25	4	0	0	0	0.78069	1	4081	4081		40.573	7.057	1	2986200	+		25126	21003	17345	17383	28994	28994					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801208496094	2	434.778754	867.542954	0.15534	6.7538E-05	3.0454	0.0013241	3.2007	0.0013916	434.77996518621967	36.241	1.8835	36.025	35.43	37.314	-0.21661					124	49	3	0	0	0	0.75282	1	2824	2824		42.474	7.2737	1	8069600	+		25127	21003	17345	17383	28995	28995					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801208496094	2	434.778754	867.542954	-0.40362	-0.00017549	3.8038	0.0016538	3.4002	0.0014783	434.78025944914594	39.076	1.2022	38.853	38.652	39.854	-0.22311					105	31	4	0	0	0	0.75282	2	3323	3289;3323		42.474	10.52	1	3544900	+		25128	21003	17345	17383	28996;28997	28997					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	434.778754	867.542954	-0.096708	-4.2046E-05	3.3703	0.0014653	3.2736	0.0014233	434.78008853825247	40.597	2.0449	40.372	39.62	41.665	-0.225					180	53	4	0	0	0	0.75282	3	3513	3513;3563;3619		42.474	2.1133	1	6024800	+		25129	21003	17345	17383	28998;28999;29000	28998					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7800598144531	2	434.778754	867.542954	1.4087	0.00061247	1.711	0.00074391	3.1197	0.0013564	434.779355277664	36.149	1.9951	35.951	35.288	37.284	-0.19829					165	52	6	0	0	0	0.4855	4	2758	2758;2770;2793;2805		60.294	11.727	1	8518400	+		25130	21003	17345	17383	29001;29002;29003;29004	29001					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7802429199219	2	434.778754	867.542954	0.33045	0.00014367	3.1241	0.0013583	3.4545	0.001502	434.7799891865414	39.132	1.2195	38.907	38.636	39.856	-0.2257					99	32	4	0	0	0	0.75282	2	3337	3317;3337		42.474	10.52	1	4063300	+		25131	21003	17345	17383	29005;29006	29006					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.78033447265625	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	0.75282	1	3526	3526		42.474	1.9018	1	6443300	+		25132	21003	17345	17383	29007	29007					0.10388447425282266
IGGLILVPS	9	Unmodified	_IGGLILVPS_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77996826171875	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	0.75282	1	4044	4044		42.474	7.2737	1	4335900	+		25133	21003	17345	17383	29008	29008					0.10388447425282266
IGGPLGTGAF	10	Unmodified	_IGGPLGTGAF_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;ENST00000397013.2_1_11:3752752-3765856:-|nuORF	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.2328796386719	2	445.242535	888.470518	-0.93679	-0.0004171	-1.5032	-0.00066931	-2.44	-0.0010864	445.2411105573597	37.754	0.48008	37.671	37.537	38.017	-0.082512					18	13	2	0	0	0	0.03519	1	3149	3149		30.504	2.6214	1	92810			25134	3057	17346	17384	29009	29009					0.02182113351705084
IGGQIMFLTG	10	Unmodified	_IGGQIMFLTG_					0	0	0		ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.779541015625	2	518.778428	1035.5423	-0.74322	-0.00038557	3.6772	0.0019076	2.934	0.0015221	518.780303054325	51.644	1.2453	51.497	51.12	52.366	-0.14735					78	34	4	0	0	0	0.85955	1	5456	5456		56.721	1.2168	1	9437400			25135	9807	17347	17385	29010	29010					0.025952847139024016
IGGTILYAK	9	Unmodified	_IGGTILYAK_					0	0	0		IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.7566223144531	2	468.28166	934.548768	0.16546	7.7482E-05	-3.3559	-0.0015715	-3.1904	-0.001494	468.27998233933977	93.863	1.75	93.863	93.429	95.179	0					68	41	3	0	0	0	0.024436	1	11988	11988		30.504	0	1	1606500			25136	4589;14263	17348	17386	29011	29011					0.07887545936932838
IGGVIGCLRVF	11	Unmodified	_IGGVIGCLRVF_					0	0	0			REV__ENSG00000087502|ENST00000360150|ERGIC2	REV__ENSG00000087502|ENST00000360150|ERGIC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3289184570312	2	567.328619	1132.64269	0.22871	0.00012975	1.4675	0.00083253	1.6962	0.00096228	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.0442	1	11318	11318		26.693	0	1	18337000	+		25137	20803	17349	17387	29012	29012					0.08166941767581193
IGGVVALVAM	10	Unmodified	_IGGVVALVAM_					0	0	0			REV__ENST00000430598.5_1_15:20613931-20667676:-|nuORF	REV__ENST00000430598.5_1_15:20613931-20667676:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.27996826171875	2	465.278063	928.541574	0.10623	4.9428E-05	4.2696	0.0019865	4.3758	0.002036	465.2798872623321	87.824	1.1491	87.824	87.491	88.64	0					78	27	4	0	0	0	1.1309	1	11086	11086		26.796	0	1	1815400	+		25138	32357	17350	17388	29013	29013					0.07444490064870024
IGHIARHYI	9	Unmodified	_IGHIARHYI_					0	0	0			REV__ZNF845|p.Q570R|1|0.08|ENSG00000213799|chr19:53352384-53352384|A/G|missense_variant	REV__ZNF845|p.Q570R|1|0.08|ENSG00000213799|chr19:53352384-53352384|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2855224609375	2	540.309075	1078.6036	-0.0031586	-1.7066E-06	-3.6552	-0.0019749	-3.6583	-0.0019766	540.3070266151078	22.553	0.55333	22.364	21.959	22.512	-0.18894					14	11	2	0	0	0	0.024517	1	802	802		35.201	0	1	75636	+		25139	37825	17351	17389	29014	29014					0.06743977528230971
IGIAPWGI	8	Unmodified	_IGIAPWGI_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENST00000354500.6_1_9:73442757-73477826:-|nuORF;nc|ENSG00000083067|Q9HCF6-12|TRPM3;nc|ENSG00000134160|Q7Z4N2-4|TRPM1;nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.7611389160156	2	413.744714	825.474875	-0.056797	-2.35E-05	0.12383	5.1234E-05	0.067032	2.7734E-05	413.74540074311767	45.58	0.17039	45.428	45.309	45.48	-0.15157					5	4	2	0	0	0	0.027866	1	4413	4413		80.997	26.102	1	29004			25140	4760;1744	17352	17390	29015	29015					0.05515622565269496
IGIHYKGSP	9	Unmodified	_IGIHYKGSP_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2641296386719	2	486.269084	970.523616	-0.48351	-0.00023512	-1.5058	-0.0007322	-1.9893	-0.00096732	486.2673189323543	30.778	0.37313	30.79	30.541	30.914	0.011799					11	8	2	0	0	0	0.024292	1	1991	1991		49.442	1.7842	1	59851	+		25141	23494	17353	17391	29016	29016					0.0371749113437545
IGIIVPIVV	9	Unmodified	_IGIIVPIVV_					0	0	0		nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.82073974609375	2	461.820421	921.62629	0.54814	0.00025314	-0.40999	-0.00018934	0.13815	6.3802E-05	461.8200699175898	97.494	0.70368	97.502	97.192	97.896	0.0089111					38	15	4	0	0	0	0.93795	1	12407	12407		29.842	0	1	274230			25142	18407	17354	17392	29017	29017					0.16234183873120855
IGIKDNLD	8	Unmodified	_IGIKDNLD_					0	0	0		ENST00000486882.5_1_1:79094613-79107491:+|nuORF	ENST00000486882.5_1_1:79094613-79107491:+|nuORF	ENST00000486882.5_1_1:79094613-79107491:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.2686462402344	2	444.245275	886.475997	-0.28198	-0.00012527	1.094	0.00048601	0.81204	0.00036074	444.2456322341719	28.356	0.75834	28.352	28.117	28.875	-0.0042019					30	17	2	0	0	0	0.027866	1	1679	1679		31.955	13.63	1	608400			25143	15355	17355	17393	29018	29018					0.028217921435157223
IGILLTVTHGI	11	Unmodified	_IGILLTVTHGI_					0	0	0			REV__nc|ENSG00000174792|Q17RF5-2|ODAPH	REV__nc|ENSG00000174792|Q17RF5-2|ODAPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.8533935546875	2	568.855524	1135.69649	0.53704	0.0003055	-4.4255	-0.0025175	-3.8885	-0.002212	568.8529077944462	101.24	1.8533	101.1	100.77	102.62	-0.13156					114	42	5	0	0	0	1.0119	1	12580	12580		34.173	0.25091	1	7301700	+		25144	36954	17356	17394	29019	29019					0.1340743747093711
IGIMIDVPR	9	Unmodified	_IGIMIDVPR_					0	0	0		ENST00000416702.1_1_10:21318681-21319128:+|nuORF	ENST00000416702.1_1_10:21318681-21319128:+|nuORF	ENST00000416702.1_1_10:21318681-21319128:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8133239746094	2	507.294245	1012.57394	-1.4428	-0.00073191	-3.0943	-0.0015697	-4.537	-0.0023016	507.29136667399206	93.107	0.17483	92.967	92.829	93.004	-0.13995					5	3	2	0	0	0	0.024487	1	11443	11443		24.203	4.8428	1	20505			25145	13903	17357	17395	29020	29020					0.06815277467876513
IGIRIHWP	8	Unmodified	_IGIRIHWP_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2884521484375	2	496.295436	990.57632	-0.19207	-9.5324E-05	-0.86649	-0.00043004	-1.0586	-0.00052536	496.29489253367063	82.142	0.63147	82.168	81.899	82.531	0.025711					24	14	2	0	0	0	0.027866	1	10139	10139		29.842	5.6388	1	317240	+		25146	20872	17358	17396	29021	29021					0.08065493987851369
IGISYFIGFL	10	Unmodified	_IGISYFIGFL_					0	0	0		nc|ENSG00000213439|P0C628|OR5AC1	nc|ENSG00000213439|P0C628|OR5AC1	nc|ENSG00000213439|P0C628|OR5AC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.3139038085938	2	565.318243	1128.62193	0.19856	0.00011225	-3.171	-0.0017926	-2.9724	-0.0016803	565.3166007171278	17.502	0.22351	17.359	17.229	17.453	-0.14278					6	4	2	0	0	0	1.1112	1	173	173		16.473	0.83134	1	15956			25147	18709	17359	17397	29022	29022					0.0627667465957984
IGIYCLNQI	9	Unmodified	_IGIYCLNQI_					0	0	0		ENSG00000151687|ENST00000684021|ANKAR;ANKAR|p.R602Kfs*13|1|0.22|ENSG00000151687|chr2:189705112-189705113|-/A|frameshift_variant;nc|ENSG00000151687|Q7Z5J8-2|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7799072265625	2	518.778428	1035.5423	-0.74322	-0.00038557	3.6772	0.0019076	2.934	0.0015221	518.780303054325	51.644	1.2453	51.497	51.12	52.366	-0.14735					78	34	4	0	0	0	0.75282	1	5495	5495		42.474	0.078325	1	9437400			25148	6218	17360	17398	29023	29023					0.025952847139024016
IGKIRTEA	8	Unmodified	_IGKIRTEA_					0	0	0		ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55003385-55003553:+|nuORF	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.2682800292969	2	444.269084	886.523616	-0.55681	-0.00024738	0.43344	0.00019256	-0.12338	-5.4812E-05	444.2691582986235	28.732	0.77514	28.563	28.254	29.029	-0.16897					30	17	2	0	0	0	0.43637	1	1692	1692		92.191	7.2751	1	1086600			25149	125	17361	17399	29024	29024					0.0758149113436275
IGKIRTEA	8	Unmodified	_IGKIRTEA_					0	0	0		ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55003385-55003553:+|nuORF	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.2682189941406	2	444.269084	886.523616	-0.23577	-0.00010475	0.087511	3.8878E-05	-0.14826	-6.5868E-05	444.2689919117459	28.743	0.67618	28.592	28.321	28.997	-0.15195					25	15	2	0	0	0	0.68535	1	1680	1680		68.485	2.0554	1	1343800			25150	125	17361	17399	29025	29025					0.0758149113436275
IGKVKEVDKE	10	Unmodified	_IGKVKEVDKE_					0	0	0		ENST00000296530.12_1_4:159048632-159048695:-|nuORF	ENST00000296530.12_1_4:159048632-159048695:-|nuORF	ENST00000296530.12_1_4:159048632-159048695:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	572.78173828125	2	572.832246	1143.64994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.823	1	15.57	15.07	16.07	-0.25378								0	0	0	0.77833	1	37	37		14.865	0.72775	1				25151	11843	17362	17400	29026	29026					0.08385952848993838
IGLDLQIGK	9	Unmodified	_IGLDLQIGK_					0	0	0		nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.792236328125	2	478.792392	955.570232	0.67364	0.00032254	-0.7126	-0.00034119	-0.038956	-1.8652E-05	478.7918586739343	50.85	0.5965	50.669	50.426	51.023	-0.18071					35	15	3	0	0	0	0.77768	1	5203	5203		40.778	1.972	1	1949600			25152	18362	17363	17401	29027	29027					0.09066930965661868
IGLDVYSETL	10	Unmodified	_IGLDVYSETL_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.2722778320312	2	555.289879	1108.56521	0.80245	0.00044559	2.7286	0.0015152	3.5311	0.0019608	556.2954949275874	95.912	0.29591	95.914	95.739	96.035	0.0020752					8	6	3	0	0	0	0.03519	1	12125	12125		87.754	5.4493	1	30761	+		25153	21411	17364	17402	29028	29028					0.015265823123854716
IGLIFHQSL	9	Unmodified	_IGLIFHQSL_					0	0	0			REV__ENST00000468857.1_1_1:207228062-207228203:+|nuORF	REV__ENST00000468857.1_1_1:207228062-207228203:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.2984619140625	2	514.300384	1026.58622	0.092328	4.7485E-05	-4.1912	-0.0021555	-4.0988	-0.002108	514.2981816905186	95.108	0.82266	95.112	94.651	95.474	0.0033722					47	18	5	0	0	0	0.92825	1	12095	12095		30.504	1.3541	1	1292300	+		25154	33115	17365	17403	29029	29029					0.07398637202550162
IGLIFVVD	8	Unmodified	_IGLIFVVD_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.77154541015625	2	438.265479	874.516405	0.18432	8.078E-05	-4.1875	-0.0018352	-4.0032	-0.0017545	438.26346937757125	22.497	0.59839	22.308	22.055	22.653	-0.18894					25	12	3	0	0	0	0.027866	1	829	829		39.021	18.54	1	162850			25155	18285	17366	17404	29030	29030					0.07412758533951092
IGLIHAVAEV	10	Unmodified	_IGLIHAVAEV_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.3055725097656	2	511.305667	1020.59678	0.39735	0.00020317	-0.95181	-0.00048666	-0.55446	-0.0002835	511.3051399281556	65.894	0.90424	65.894	65.358	66.262	0					70	23	4	0	0	0	0.91051	1	7862	7862		53.351	2.016	1	14132000	+		25156	26394	17367	17405	29031	29031					0.08730619856987687
IGLIRNLAL	9	Unmodified	_IGLIRNLAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;ENST00000585793.1_1_17:39914605-39919321:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.82391357421875	2	491.824027	981.633501	0.088461	4.3507E-05	-0.49122	-0.00024159	-0.40276	-0.00019809	491.8237772370958	70.049	0.73724	69.799	69.483	70.22	-0.25063					55	17	4	0	0	0	0.17455	1	8169	8169		94.006	11.701	1	9033600			25157	8411	17368	17406	29032	29032					0.14194916473547892
IGLLPFVGL	9	Unmodified	_IGLLPFVGL_					0	0	0			REV__ENSG00000188000|ENST00000641288|OR7D2	REV__ENSG00000188000|ENST00000641288|OR7D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2792053222656	2	464.796946	927.57934	-0.33205	-0.00015434	-4.0105	-0.0018641	-4.3426	-0.0020184	464.7948732503745	52.254	0.83102	52.254	51.803	52.634	0					44	21	3	0	0	0	0.024289	1	5539	5539		39.021	3.4032	1	1009300	+		25158	27999	17369	17407	29033	29033					0.11265324321982462
IGLLSPGIL	9	Unmodified	_IGLLSPGIL_					0	0	0		ENST00000568920.1_1_16:57246991-57250108:+|nuORF;ENSG00000159579|ENST00000394420|RSPRY1;ENST00000562768.5_1_16:57241991-57250827:+|nuORF	ENST00000568920.1_1_16:57246991-57250108:+|nuORF	ENST00000568920.1_1_16:57246991-57250108:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7880554199219	2	441.786579	881.558604	-0.38487	-0.00017003	3.5904	0.0015862	3.2055	0.0014162	441.7880479717175	42.934	0.83905	42.696	42	42.839	-0.23736					61	21	6	0	0	0	0.96121	1	3879	3879		28.254	0	1	6899500			25159	6753	17370	17408	29034	29034					0.11308733942325944
IGLMVPLLI	9	Unmodified	_IGLMVPLLI_					0	0	0		ENSG00000097096|ENST00000341460|SYDE2;nc|ENSG00000097096|Q5VT97-2|SYDE2;ENST00000234668.6_1_1:85647735-85666124:-|nuORF	ENSG00000097096|ENST00000341460|SYDE2	ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.79815673828125	2	484.814282	967.614011	0.17867	8.6623E-05	-2.3139	-0.0011218	-2.1352	-0.0010352	484.812847483556	58.597	0.18542	58.688	58.523	58.708	0.091217					7	4	2	0	0	0	0.023868	1	6566	6566		60.404	5.639	1	180180			25160	2059	17371	17409	29035	29035					0.12890824138446533
IGLPGAGKTTW	11	Unmodified	_IGLPGAGKTTW_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8073120117188	2	550.808574	1099.60259	0.018866	1.0392E-05	-0.45471	-0.00025046	-0.43584	-0.00024006	550.8081390012022	60.011	1.2823	59.835	58.957	60.239	-0.1761					69	32	4	0	0	0	0.61592	1	6679	6679		68.846	24.469	1	3074400			25161	6327	17372	17410	29036	29036					0.05677718368656315
IGLPGAGKTTW	11	Unmodified	_IGLPGAGKTTW_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8079223632812	2	550.808574	1099.60259	-0.38341	-0.00021119	-0.25825	-0.00014225	-0.64166	-0.00035343	550.8081983654632	60.209	0.96626	59.961	59.417	60.384	-0.24842					67	24	4	0	0	0	0.38769	2	6681	6681;6692		83.647	41.251	1	2967500			25162	6327	17372	17410	29037;29038	29037					0.05677718368656315
IGLQNLLVQ	9	Unmodified	_IGLQNLLVQ_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;nc|ENSG00000167077|Q5TIA1-7|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2348327636719	2	499.305667	996.596781	-0.75536	-0.00037715	1.1092	0.00055381	0.35381	0.00017666	499.3060426734797	57.443	0.54833	57.21	56.914	57.463	-0.23363					22	14	2	0	0	0	0.024405	1	6215	6215		35.618	7.736	1	180350			25163	7644	17373	17411	29039	29039					0.0983461985700842
IGLQNLLVQ	9	Unmodified	_IGLQNLLVQ_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;nc|ENSG00000167077|Q5TIA1-7|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	499.305667	996.596781	-0.033585	-1.6769E-05	-0.049477	-2.4704E-05	-0.083061	-4.1473E-05	499.3054067331501	57.267	0.52361	57.267	56.936	57.459	0	0.024546	-0.00042373	NaN	20.947	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1465600			25164	7644	17373	17411							0.0983461985700842
IGLQNLLVQ	9	Unmodified	_IGLQNLLVQ_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;nc|ENSG00000167077|Q5TIA1-7|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.305667	996.596781	0.37909	0.00018928	-0.47773	-0.00023853	-0.09864	-4.9252E-05	499.30511996450946	57.49	0.63611	57.316	56.898	57.534	-0.1749	0.072861	-0.00085139	NaN	20.947	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1031200			25165	7644	17373	17411							0.0983461985700842
IGLQNLLVQ	9	Unmodified	_IGLQNLLVQ_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;nc|ENSG00000167077|Q5TIA1-7|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.305667	996.596781	-0.66893	-0.000334	0.96743	0.00048304	0.2985	0.00014904	499.30620611742654	57.384	0.51183	57.217	56.932	57.444	-0.1672	-0.026139	0.00059176	NaN	20.947	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165590			25166	7644	17373	17411							0.0983461985700842
IGLQPLVTD	9	Unmodified	_IGLQPLVTD_					0	0	0		YY1|p.A85G|1|0.4|ENSG00000100811|chr14:100239498-100239498|C/G|missense_variant	YY1|p.A85G|1|0.4|ENSG00000100811|chr14:100239498-100239498|C/G|missense_variant	YY1|p.A85G|1|0.4|ENSG00000100811|chr14:100239498-100239498|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7510681152344	2	478.276575	954.538597	1.8834	0.00090078	2.7042	0.0012933	4.5875	0.0021941	478.27789441409135	23.401	0.93968	23.21	22.988	23.928	-0.19117					38	21	3	0	0	0	0.024397	1	991	991		31.53	0	1	188810			25167	38167	17374	17412	29040	29040					0.0595093821170849
IGLSVSILSL	10	Unmodified	_IGLSVSILSL_					0	0	0		ENSG00000153294|ENST00000283303|ADGRF4;ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	ENSG00000153294|ENST00000283303|ADGRF4;ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3148498535156	2	501.3157	1000.61685	-0.84722	-0.00042472	0.13053	6.5435E-05	-0.71669	-0.00035929	501.31566206288034	60.486	1.0354	60.232	59.977	61.012	-0.25373					62	25	4	0	0	0	0.57825	1	6732	6732		79.451	2.6769	1	3858500			25168	6340;36	17375	17413	29041	29041					0.1165637079697035
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.77978515625	2	434.778754	867.542954	0.45067	0.00019594	2.8989	0.0012604	3.3496	0.0014563	434.7798992749092	40.428	1.9181	40.428	39.696	41.615	0					185	53	4	0	0	0	0.93274	1	3526	3526		47.916	0	1	6987300	+		25169	23598	17376	17414	29042	29042					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7804260253906	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	0.96719	2	3561	3526;3561		42.474	0	1	6285600	+		25170	23598	17376	17414	29043;29044	29044					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.77978515625	2	434.778754	867.542954	-0.095049	-4.1325E-05	3.2879	0.0014295	3.1928	0.0013882	434.78010469367223	36.167	2.0758	36.205	35.569	37.645	0.038044					161	55	3	0	0	0	0.71833	3	2777	2777;2789;2838		65.803	0	1	9580100	+		25171	23598	17376	17414	29045;29046;29047	29045					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7797546386719	2	434.778754	867.542954	-0.025772	-1.1205E-05	3.413	0.0014839	3.3872	0.0014727	434.78012510207304	40.646	1.8414	40.669	40.013	41.854	0.023006					178	51	4	0	0	0	0.87148	1	3504	3504		53.351	5.4358	1	8357300	+		25172	23598	17376	17414	29048	29048					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7798156738281	2	434.778754	867.542954	-0.43363	-0.00018853	3.7697	0.001639	3.3361	0.0014505	434.7802551861221	40.423	1.9513	40.273	39.513	41.464	-0.1497					168	51	4	0	0	0	0.91239	1	3492	3492		50.025	7.5501	1	6063000	+		25173	23598	17376	17414	29049	29049					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7808532714844	2	434.778754	867.542954	-0.73827	-0.00032098	3.2902	0.0014305	2.5519	0.0011095	434.7800360405225	44.094	0.96561	43.989	43.701	44.667	-0.10468					85	25	4	0	0	0	0.93274	2	4105	4093;4105		47.916	1.4209	1	2986200	+		25174	23598	17376	17414	29050;29051	29051					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7798156738281	2	434.778754	867.542954	-0.40362	-0.00017549	3.8038	0.0016538	3.4002	0.0014783	434.78025944914594	39.076	1.2022	38.853	38.652	39.854	-0.22311					105	31	4	0	0	0	1.0239	1	3311	3311		33.516	0	1	3544900	+		25175	23598	17376	17414	29052	29052					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	434.778754	867.542954	-0.096708	-4.2046E-05	3.3703	0.0014653	3.2736	0.0014233	434.78008853825247	40.597	2.0449	40.372	39.62	41.665	-0.225					180	53	4	0	0	0	0.99042	1	3478	3478		38.806	0	1	6024800	+		25176	23598	17376	17414	29053	29053					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7797546386719	2	434.778754	867.542954	-0.73732	-0.00032057	3.4626	0.0015055	2.7253	0.0011849	434.7801177790497	44.225	2.0022	43.98	42.832	44.835	-0.2444					165	53	4	0	0	0	0.95679	1	4050	4050		44.117	3.5442	1	3379000	+		25177	23598	17376	17414	29054	29054					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7803955078125	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	0.93274	1	3478	3478		47.916	0	1	6443300	+		25178	23598	17376	17414	29055	29055					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7799377441406	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	0.74904	3	4128	4104;4116;4128		63.306	5.495	1	4335900	+		25179	23598	17376	17414	29056;29057;29058	29058					0.10388447425282266
IGLVKLPE	8	Unmodified	_IGLVKLPE_					0	0	0			REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	REV__ENST00000473202.1_1_2:224847347-224847473:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7796630859375	2	434.778754	867.542954	0.30511	0.00013265	2.618	0.0011382	2.9231	0.0012709	434.7797610540028	48.309	1.399	48.122	47.596	48.995	-0.18684					119	37	4	0	0	0	0.97924	1	4848	4848		40.573	0	1	3718000	+		25180	23598	17376	17414	29059	29059					0.10388447425282266
IGLVPEIK	8	Unmodified	_IGLVPEIK_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	0.97924	1	4092	4092		40.573	0	1	4335900	+		25181	25874	17377	17415	29060	29060					0.10388447425282266
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7799072265625	2	434.778754	867.542954	-1.0635	-0.00046238	3.9539	0.0017191	2.8904	0.0012567	434.7803457136142	37.954	0.7486	37.954	37.45	38.199	0					65	21	4	0	0	0	0.4855	3	3144	3134;3144;3158		60.294	2.4827	1	5361200			25182	6177	17378	17416	29061;29062;29063	29062					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7803955078125	2	434.778754	867.542954	0.10241	4.4528E-05	3.2386	0.0014081	3.3411	0.0014526	434.7800312029487	38.873	1.0912	38.873	38.68	39.771	0					115	30	4	0	0	0	0.75282	4	3291	3291;3304;3316;3341		42.474	0	1	4148000			25183	6177	17378	17416	29064;29065;29066;29067	29064					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7803039550781	2	434.778754	867.542954	0.45067	0.00019594	2.8989	0.0012604	3.3496	0.0014563	434.7798992749092	40.428	1.9181	40.428	39.696	41.615	0					185	53	4	0	0	0	0.75282	3	3537	3511;3537;3571		42.474	0	1	6987300			25184	6177	17378	17416	29068;29069;29070	29069					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7801818847656	2	434.778754	867.542954	-0.9565	-0.00041586	4.0192	0.0017475	3.0627	0.0013316	434.7803730314103	37.876	0.69751	37.793	37.286	37.984	-0.082516					61	19	4	0	0	0	0.4855	2	3112	3101;3112		60.294	7.9948	1	4681300			25185	6177	17378	17416	29071;29072	29072					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7800598144531	2	434.778754	867.542954	-0.58428	-0.00025403	3.6949	0.0016065	3.1106	0.0013524	434.7802292828738	38.318	0.80281	38.235	37.95	38.753	-0.082516					77	21	4	0	0	0	0.88411	1	3183	3183		33.516	0	1	7203500			25186	6177	17378	17416	29073	29073					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7801513671875	2	434.778754	867.542954	-0.63702	-0.00027696	4.1615	0.0018093	3.5245	0.0015324	434.7804586001769	39.007	1.1435	38.908	38.737	39.88	-0.098755					106	31	4	0	0	0	0.88411	1	3299	3299		33.516	0	1	3134400			25187	6177	17378	17416	29074	29074					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7801513671875	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	0.75282	2	3536	3536;3549		42.474	0	1	6285600			25188	6177	17378	17416	29075;29076	29075					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7798767089844	2	434.778754	867.542954	-0.95099	-0.00041347	3.6893	0.001604	2.7383	0.0011905	434.78020673494336	38.061	0.70214	38.088	37.595	38.298	0.027275					63	19	4	0	0	0	0.64155	1	3097	3097		50.025	0	1	4193100			25189	6177	17378	17416	29077	29077					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7799377441406	2	434.778754	867.542954	-1.1223	-0.00048795	4.3443	0.0018888	3.222	0.0014009	434.7805290584824	38.451	0.9456	38.478	38.264	39.21	0.027275					92	25	5	0	0	0	0.88411	1	3173	3173		33.516	0	1	6751900			25190	6177	17378	17416	29078	29078					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7802734375	2	434.778754	867.542954	-0.45781	-0.00019905	4.1518	0.0018051	3.6939	0.001606	434.78043581041936	39.449	1.1412	39.473	39.17	40.312	0.023727					100	31	4	0	0	0	0.4855	3	3343	3319;3331;3343		60.294	0	1	3291800			25191	6177	17378	17416	29079;29080;29081	29081					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.778754	867.542954	-0.025772	-1.1205E-05	3.413	0.0014839	3.3872	0.0014727	434.78012510207304	40.646	1.8414	40.669	40.013	41.854	0.023006					178	51	4	0	0	0	0.75282	3	3539	3539;3601;3626		42.474	0	1	8357300			25192	6177	17378	17416	29082;29083;29084	29082					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7796325683594	2	434.778754	867.542954	-0.29825	-0.00012967	3.5937	0.0015625	3.2955	0.0014328	434.78023464809854	48.408	2.8507	48.474	47.777	50.628	0.066795					202	80	3	0	0	0	0.78069	1	4886	4886		40.573	0	1	1797000			25193	6177	17378	17416	29085	29085					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.78021240234375	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	0.85941	1	2837	2837		35.201	0	1	8541000			25194	6177	17378	17416	29086	29086					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7799987792969	2	434.778754	867.542954	-0.29866	-0.00012985	4.3172	0.001877	4.0185	0.0017472	434.78008347013633	37.971	0.60732	37.791	37.363	37.971	-0.17929					44	16	4	0	0	0	0.64155	1	3084	3084		50.025	9.4519	1	3804100			25195	6177	17378	17416	29087	29087					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7804870605469	2	434.778754	867.542954	-0.43363	-0.00018853	3.7697	0.001639	3.3361	0.0014505	434.7802551861221	40.423	1.9513	40.273	39.513	41.464	-0.1497					168	51	4	0	0	0	0.75282	1	3539	3539		42.474	0	1	6063000			25196	6177	17378	17416	29088	29088					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.779541015625	2	434.778754	867.542954	-0.014697	-6.39E-06	3.2031	0.0013926	3.1884	0.0013862	434.7800279350698	42.165	1.6534	42.042	41.111	42.765	-0.12299					112	43	3	0	0	0	0.75282	1	3764	3764		42.474	8.9589	1	2497500			25197	6177	17378	17416	29089	29089					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7796325683594	2	434.778754	867.542954	-0.22339	-9.7125E-05	3.2901	0.0014305	3.0667	0.0013333	434.7800474486308	43.57	1.0371	43.458	42.735	43.772	-0.11253					97	27	4	0	0	0	0.85941	1	4021	4021		35.201	0	1	2474000			25198	6177	17378	17416	29090	29090					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801208496094	2	434.778754	867.542954	0.15534	6.7538E-05	3.0454	0.0013241	3.2007	0.0013916	434.77996518621967	36.241	1.8835	36.025	35.43	37.314	-0.21661					124	49	3	0	0	0	0.4855	1	2787	2787		60.294	0	1	8069600			25199	6177	17378	17416	29091	29091					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801513671875	2	434.778754	867.542954	-0.63914	-0.00027789	3.8333	0.0016666	3.1942	0.0013888	434.7802686350116	38.389	0.72919	38.168	37.959	38.688	-0.22149					66	19	4	0	0	0	1.0051	1	3217	3217		19.36	0	1	4491300			25200	6177	17378	17416	29092	29092					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.77972412109375	2	434.778754	867.542954	-0.40362	-0.00017549	3.8038	0.0016538	3.4002	0.0014783	434.78025944914594	39.076	1.2022	38.853	38.652	39.854	-0.22311					105	31	4	0	0	0	0.85941	1	3299	3299		35.201	0	1	3544900			25201	6177	17378	17416	29093	29093					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7801513671875	2	434.778754	867.542954	-0.72648	-0.00031586	3.6936	0.0016059	2.9671	0.0012901	434.7802124734377	48.558	1.352	48.282	47.775	49.127	-0.27598					129	36	4	0	0	0	0.75282	2	4885	4861;4885		42.474	8.9589	1	3466800			25202	6177	17378	17416	29094;29095	29095					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77978515625	2	434.778754	867.542954	0.074719	3.2486E-05	3.0656	0.0013329	3.1403	0.0013654	434.77992067571773	38.391	0.75215	38.173	37.957	38.71	-0.21849					69	20	4	0	0	0	0.97516	1	3196	3196		25.45	1.2474	1	5000400			25203	6177	17378	17416	29096	29096					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.77978515625	2	434.778754	867.542954	0.33045	0.00014367	3.1241	0.0013583	3.4545	0.001502	434.7799891865414	39.132	1.2195	38.907	38.636	39.856	-0.2257					99	32	4	0	0	0	0.85941	2	3292	3281;3292		35.201	0	1	4063300			25204	6177	17378	17416	29097;29098	29098					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	0.85941	1	4056	4056		35.201	0	1	4335900			25205	6177	17378	17416	29099	29099					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7796936035156	2	434.778754	867.542954	-0.14241	-6.1915E-05	3.1416	0.0013659	2.9992	0.001304	434.7799833820127	45.287	1.6255	45.076	44.595	46.221	-0.21109					100	44	4	0	0	0	0.72268	1	4267	4267		44.531	3.9584	1	2457200			25206	6177	17378	17416	29100	29100					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7799987792969	2	434.778754	867.542954	0.30511	0.00013265	2.618	0.0011382	2.9231	0.0012709	434.7797610540028	48.309	1.399	48.122	47.596	48.995	-0.18684					119	37	4	0	0	0	0.75282	5	4824	4781;4794;4824;4837;4873		42.474	0	1	3718000			25207	6177	17378	17416	29101;29102;29103;29104;29105	29103					0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.778754	867.542954	-0.070391	-3.0604E-05	3.1007	0.0013481	3.0304	0.0013175	434.7800495002481	45.404	0.88614	45.404	44.827	45.714	0	0.22456	-7.2916E-05	NaN	44.531	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835710			25208	6177	17378	17416							0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	434.778754	867.542954	-0.29073	-0.0001264	3.3859	0.0014721	3.0952	0.0013457	434.78009141476065	45.147	1.2486	45.048	44.672	45.921	-0.099445	-0.1318	0.00017506	NaN	44.531	108	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1595800			25209	6177	17378	17416							0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	434.778754	867.542954	-0.048389	-2.1038E-05	3.0829	0.0013404	3.0345	0.0013193	434.7799525577371	45.442	1.308	45.19	44.63	45.938	-0.25252	0.010513	-8.8467E-05	NaN	44.531	98	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1619500			25210	6177	17378	17416							0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	434.778754	867.542954	-0.7607	-0.00033073	6.3354	0.0027545	5.5748	0.0024238	434.7803216725711	38.065	0.90372	37.844	37.15	38.054	-0.22148	-0.043697	0.0020559	NaN	60.294	65	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3756800			25211	6177	17378	17416							0.10388447425293634
IGLVTPLGV	9	Unmodified	_IGLVTPLGV_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	434.778754	867.542954	-0.38002	-0.00016522	7.7025	0.0033489	7.3225	0.0031837	434.7801691938982	38.074	0.89383	37.856	37.223	38.117	-0.21848	-0.032023	0.0032446	NaN	60.294	54	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3654100			25212	6177	17378	17416							0.10388447425293634
IGMDGEDSLS	10	Unmodified	_IGMDGEDSLS_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2534790039062	2	512.218597	1022.42264	-0.11968	-6.1303E-05	-2.2515	-0.0011532	-2.3712	-0.0012145	512.2174164049137	54.563	0.34418	54.318	54.135	54.479	-0.2453					12	9	2	0	0	0	0.03519	1	5787	5787		25.574	0	1	169520	+		25213	28456	17379	17417	29106	29106					-0.08767373421289903
IGNKLWGL	8	Unmodified	_IGNKLWGL_					0	0	0			REV__nc|ENSG00000168843|Q8N475-3|FSTL5	REV__nc|ENSG00000168843|Q8N475-3|FSTL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.76702880859375	2	450.76872	899.522887	-0.45825	-0.00020656	-4.4381	-0.0020006	-4.8964	-0.0022071	450.76670321802317	35.271	0.86373	35.058	34.685	35.548	-0.21246					60	21	4	0	0	0	0.37803	3	2647	2647;2655;2680		100.27	12.518	1	7994500	+		25214	26298	17380	17418	29107;29108;29109	29107					0.06910696485306289
IGNLSSVY	8	Unmodified	_IGNLSSVY_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.3030090332031	2	426.726718	851.438883	0.86002	0.00036699	0.65648	0.00028014	1.5165	0.00064713	426.7272460362424	68.167	0.20674	67.912	67.821	68.028	-0.25516					5	4	2	0	0	0	0.027866	1	7874	7874		27.882	0	1	22306			25215	7493	17381	17419	29110	29110					0.007221205977657519
IGNTLKPK	8	Unmodified	_IGNTLKPK_					0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|54|3|sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|54|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7795104980469	2	435.774003	869.533452	-0.65723	-0.00028641	0.1904	8.2973E-05	-0.46683	-0.00020343	435.7738950037775	48.332	0.50757	48.234	47.966	48.474	-0.097553					18	13	3	0	0	0	0.027866	1	4796	4796		27.882	1.1893	1	165880	+		25216	36244	17382	17420	29111	29111					0.09346679139753178
IGNTLKPK	8	Unmodified	_IGNTLKPK_					0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|54|3|sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|54|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.774003	869.533452	-0.34241	-0.00014921	0.1778	7.748E-05	-0.16461	-7.1734E-05	435.77397097851184	48.542	0.31469	48.39	48.261	48.575	-0.15277	0.068173	-8.34E-06	NaN	27.882	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187300	+		25217	36244	17382	17420							0.09346679139753178
IGNTLKPK	8	Unmodified	_IGNTLKPK_					0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|54|3|sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|54|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.774003	869.533452	0.08614	3.7538E-05	-0.093032	-4.0541E-05	-0.0068923	-3.0035E-06	435.77384869579674	48.303	0.39921	48.37	48.154	48.553	0.066799	0.048754	-0.00024438	NaN	27.882	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127700	+		25218	36244	17382	17420							0.09346679139753178
IGPEGGVRT	9	Unmodified	_IGPEGGVRT_					0	0	0			REV__nc|ENSG00000148824|Q9BT17-2|MTG1	REV__nc|ENSG00000148824|Q9BT17-2|MTG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.24273681640625	2	443.243067	884.47158	-0.6829	-0.00030269	0.37576	0.00016655	-0.30715	-0.00013614	443.2432481723972	38.172	1.4344	38.089	37.636	39.071	-0.082516					105	39	4	0	0	0	0.55828	1	3201	3201		55.504	0.73953	1	21001000	+		25219	32862	17383	17421	29112	29112					0.024723277206248895
IGPGRQGSSL	10	Unmodified	_IGPGRQGSSL_					0	0	0			REV__ENST00000479281.5_1_X:51931784-51932886:+|nuORF	REV__ENST00000479281.5_1_X:51931784-51932886:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.2682189941406	2	486.267073	970.519593	1.2062	0.00058654	-0.44107	-0.00021448	0.76514	0.00037206	486.2670225456818	98.431	0.63458	98.307	97.911	98.546	-0.12413					23	14	2	0	0	0	1.0344	1	12212	12212		41.427	6.2259	1	134120	+		25220	33394	17384	17422	29113	29113					0.03315401640657001
IGPHTLLE	8	Unmodified	_IGPHTLLE_					0	0	0			REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7765808105469	2	440.25036	878.486168	0.16483	7.2566E-05	3.4998	0.0015408	3.6646	0.0016134	440.2518867913699	22.051	1.3742	21.849	21.326	22.7	-0.20199					54	28	3	0	0	0	0.027866	1	720	720		35.201	8.4046	1	40351	+		25221	26830	17385	17423	29114	29114					0.04206399868769495
IGPMTQAKK	9	Unmodified	_IGPMTQAKK_					0	0	0			REV__ENST00000514794.6_2_5:88240283-88240370:+|nuORF	REV__ENST00000514794.6_2_5:88240283-88240370:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7976379394531	2	487.278595	972.542637	-0.0347	-1.6908E-05	-0.10969	-5.3452E-05	-0.14439	-7.036E-05	487.2786233143813	50.029	0.86264	49.878	49.596	50.458	-0.1512					76	24	5	0	0	0	0.024495	1	5234	5234		34.173	18.531	1	2748100	+		25222	34182	17386	17424	29115	29115					0.05526704433771101
IGQEIAEAV	9	Unmodified	_IGQEIAEAV_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L;ENST00000462119.5_1_6:111628768-111636625:-|nuORF	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2508544921875	2	465.250557	928.486562	-0.27915	-0.00012988	0.50228	0.00023369	0.22313	0.00010381	465.2506540018102	65.387	0.86388	65.146	64.802	65.665	-0.24126					48	20	4	0	0	0	0.45795	1	7474	7474		62.107	0	1	1086100			25223	857	17387	17425	29116	29116					0.01945774797957256
IGQVKISST	9	Unmodified	_IGQVKISST_					0	0	0			REV__nc|ENSG00000169762|Q6NXT6-2|TAPT1	REV__nc|ENSG00000169762|Q6NXT6-2|TAPT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.77447509765625	2	466.7742	931.533846	0.77676	0.00036257	-0.05232	-2.4422E-05	0.72444	0.00033815	466.7740128115294	19.341	0.48107	19.341	19.119	19.6	0					25	9	4	0	0	0	0.62163	1	398	398		51.335	1.8939	1	316980	+		25224	26398	17388	17426	29117	29117					0.06534054068947626
IGQVKISST	9	Unmodified	_IGQVKISST_					0	0	0			REV__nc|ENSG00000169762|Q6NXT6-2|TAPT1	REV__nc|ENSG00000169762|Q6NXT6-2|TAPT1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	466.7742	931.533846	0.77676	0.00036257	-0.05232	-2.4422E-05	0.72444	0.00033815	466.7740128115294	19.341	0.48107	19.341	19.119	19.6	0	-0.12599	0.00013664	NaN	51.335	25	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316980	+		25225	26398	17388	17426							0.06534054068947626
IGRGGRVIM	9	Unmodified	_IGRGGRVIM_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7688903808594	2	479.784379	957.554204	-0.25808	-0.00012383	4.2772	0.0020521	4.0191	0.0019283	479.78635991573145	34.659	0.23883	34.654	34.53	34.769	-0.0045624					6	5	2	0	0	0	0.024262	1	2596	2596		68.485	34.969	1	26077			25226	4966	17389	17427	29118	29118					0.07372946247767231
IGRSVKGRHL	10	Unmodified	_IGRSVKGRHL_					0	0	0		CON__Q2KJ83	CON__Q2KJ83	CON__Q2KJ83	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.8458251953125	2	561.846356	1121.67816	-0.3824	-0.00021485	-0.76771	-0.00043133	-1.1501	-0.00064618	561.8457535840084	95.407	1.1046	95.407	95.05	96.155	0					83	25	5	0	0	0	1.0719	1	12160	12160		36.447	1.2947	1	1909400		+	25227	546	17390	17428	29119	29119					0.12218740339608303
IGSFIDIYQ	9	Unmodified	_IGSFIDIYQ_					0	0	0		nc|ENSG00000102078|O95258-3|SLC25A14;ENST00000471795.1_1_X:129483237-129498727:+|nuORF;nc|ENSG00000102078|O95258-2|SLC25A14;ENSG00000102078|ENST00000545805|SLC25A14	nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000102078|O95258-3|SLC25A14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.273681640625	2	528.274032	1054.53351	-1.7092	-0.00090294	1.5281	0.00080726	-0.18111	-9.5678E-05	528.2746774467289	91.967	1.0034	91.818	91.439	92.442	-0.1487					59	23	3	0	0	0	0.31247	1	11278	11278		73.975	2.679	1	1513500			25228	18134	17391	17429	29120	29120					0.008426343491009902
IGSKLVGIV	9	Unmodified	_IGSKLVGIV_					0	0	0		ENST00000437208.1_1_2:187867542-187867704:-|nuORF	ENST00000437208.1_1_2:187867542-187867704:-|nuORF	ENST00000437208.1_1_2:187867542-187867704:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.242919921875	2	443.292028	884.569503	-1.3269	-0.00058822	2.7663	0.0012263	1.4394	0.00063808	443.29336083966876	38.436	0.56287	38.463	38.397	38.96	0.027275					17	14	2	0	0	0	0.022756	1	3172	3172		58.782	0	1	88792			25229	14293	17392	17430	29121	29121					0.12260136316626813
IGSPKYLS	8	Unmodified	_IGSPKYLS_					0	0	0		ENST00000425210.5_1_2:33718199-33740095:+|nuORF	ENST00000425210.5_1_2:33718199-33740095:+|nuORF	ENST00000425210.5_1_2:33718199-33740095:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.74517822265625	2	432.744911	863.475269	0.015833	6.8517E-06	-0.27698	-0.00011986	-0.26115	-0.00011301	432.7447479845207	28.054	1.3043	27.902	27.649	28.954	-0.15195					96	31	5	0	0	0	0.68164	1	1570	1570		68.787	2.3575	1	11413000			25230	14062	17393	17431	29122	29122					0.03806997494461939
IGSPKYLSF	9	Unmodified	_IGSPKYLSF_					0	0	0		ENST00000425210.5_1_2:33718199-33740095:+|nuORF	ENST00000425210.5_1_2:33718199-33740095:+|nuORF	ENST00000425210.5_1_2:33718199-33740095:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2770690917969	2	506.279118	1010.54368	-0.19141	-9.6909E-05	-4.2821	-0.0021679	-4.4735	-0.0022648	506.27691475401133	54.813	0.97548	54.582	54.28	55.255	-0.23087					73	27	4	0	0	0	0.29158	1	5842	5842		76.774	5.4784	1	9503200			25231	14062	17394	17432	29123	29123					0.03883242074323334
IGSPKYLSF	9	Unmodified	_IGSPKYLSF_					0	0	0		ENST00000425210.5_1_2:33718199-33740095:+|nuORF	ENST00000425210.5_1_2:33718199-33740095:+|nuORF	ENST00000425210.5_1_2:33718199-33740095:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	506.279118	1010.54368	-0.33973	-0.000172	-3.9025	-0.0019758	-4.2423	-0.0021478	506.2771127179075	54.733	1.0073	54.587	54.281	55.288	-0.14609	0.0047441	0.00057568	NaN	76.774	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10814000			25232	14062	17394	17432							0.03883242074323334
IGTHKPLPG	9	Unmodified	_IGTHKPLPG_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2715759277344	2	460.271627	918.528701	-0.08107	-3.7314E-05	0.89763	0.00041315	0.81656	0.00037584	460.27207060447995	43.092	1.2613	42.953	42.278	43.54	-0.13929					64	34	2	0	0	0	0.4752	1	3975	3975		60.972	2.19	1	3365400			25233	6877	17395	17433	29124	29124					0.06617794996986959
IGTLAIYFRLL	11	Unmodified	_IGTLAIYFRLL_					0	0	0			REV__ENST00000488002.5_1_3:179322588-179334847:+|nuORF	REV__ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2646484375	3	427.263941	1278.76999	-0.45997	-0.00019653	1.5699	0.00067077	1.11	0.00047425	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0712	1	5881	5881		19.263	0.73163	1	57851000	+		25234	23661	17396	17434	29125	29125					0.14175985913402656
IGTLKTSGT	9	Unmodified	_IGTLKTSGT_					0	0	0		ENST00000273582.9_2_3:197444977-197476223:-|nuORF	ENST00000273582.9_2_3:197444977-197476223:-|nuORF	ENST00000273582.9_2_3:197444977-197476223:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.2523193359375	2	439.2531	876.491647	0.69602	0.00030573	-1.9582	-0.00086013	-1.2621	-0.0005544	439.25217434324423	90.16	0.91758	90.022	89.575	90.493	-0.13824					54	21	4	0	0	0	0.89441	1	11036	11036		32.812	6.1195	1	1418600			25235	11671	17397	17435	29126	29126					0.04846078660580133
IGTLRNPEAIE	11	Unmodified	_IGTLRNPEAIE_					0	0	0		ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.8330078125	2	606.832777	1211.651	-1.6075	-0.00097546	1.1425	0.00069329	-0.46499	-0.00028217	606.8334984516033	54.608	1.2151	54.608	54.249	55.464	0					109	34	5	0	0	0	0.36442	1	5997	5997		85.161	7.6275	1	26024000			25236	3285	17398	17436	29127	29127					0.05364167217908289
IGTQLRGPQ	9	Unmodified	_IGTQLRGPQ_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2877197265625	2	485.277441	968.540328	0.12179	5.91E-05	0.63001	0.00030573	0.75179	0.00036483	485.27776355290143	42.081	0.78016	42.081	41.825	42.605	0					47	22	3	0	0	0	0.024374	1	3891	3891		25.574	0	1	4627800	+		25237	21256	17399	17437	29128	29128					0.05479992020343616
IGTVSFLTRI	10	Unmodified	_IGTVSFLTRI_					0	0	0			REV__ENST00000527754.1_1_11:129698120-129727360:+|nuORF	REV__ENST00000527754.1_1_11:129698120-129727360:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8306274414062	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0508	1	11386	11386		39.253	5.0803	1	4896800	+		25238	24789	17400	17438	29129	29129					0.10094577919812764
IGVEFMFIN	9	Unmodified	_IGVEFMFIN_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;ENST00000497326.1_1_7:44706423-44714208:+|nuORF;OGDH|p.N359Ifs*26|1|0.27|ENSG00000105953|chr7:44676018-44676018|A/-|frameshift_variant;nc|ENSG00000105953|Q02218-3|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.2718505859375	2	535.272978	1068.5314	-0.43379	-0.0002322	0.70008	0.00037474	0.26629	0.00014254	535.2730495396712	104.12	0.48478	104.13	103.87	104.36	0.0031357					26	11	3	0	0	0	0.62163	1	13331	13331		51.335	8.4712	1	291920			25239	2737	17401	17439	29130	29130					-0.0001211766034430184
IGVEFMFIN	9	Unmodified	_IGVEFMFIN_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant;ENST00000497326.1_1_7:44706423-44714208:+|nuORF;OGDH|p.N359Ifs*26|1|0.27|ENSG00000105953|chr7:44676018-44676018|A/-|frameshift_variant;nc|ENSG00000105953|Q02218-3|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	535.272978	1068.5314	-0.78858	-0.00042211	1.0392	0.00055623	0.25057	0.00013412	535.2732196524197	104.01	0.89228	103.88	103.38	104.27	-0.12928	-0.14243	0.00043239	NaN	51.335	35	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167070			25240	2737	17401	17439							-0.0001211766034430184
IGVFGCTLQV	10	Unmodified	_IGVFGCTLQV_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E;ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171017|ENST00000306708|LRRC8E;ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.780029296875	2	518.778428	1035.5423	-0.18929	-9.8199E-05	3.0172	0.0015652	2.8279	0.001467	518.7798810537632	51.525	1.0182	51.525	51.067	52.085	0					79	28	4	0	0	0	0.66532	1	5457	5457		69.628	7.5202	1	8563100			25241	8104;8157	17402	17440	29131	29131					0.02595284713925139
IGVPLPRLL	9	Unmodified	_IGVPLPRLL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.27545166015625	2	489.328945	976.643337	0.47809	0.00023394	-0.87181	-0.0004266	-0.39372	-0.00019266	489.3282068001937	59.18	0.40365	58.999	58.791	59.194	-0.18133					13	9	2	0	0	0	0.024535	1	6522	6522		25.45	4.9683	1	147630			25242	3304	17403	17441	29132	29132					0.15408104478945006
IGVVKKPK	8	Unmodified	_IGVVKKPK_					0	0	0			REV__ENST00000508926.1_1_17:47782482-47783697:-|nuORF	REV__ENST00000508926.1_1_17:47782482-47783697:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7716979980469	2	434.802563	867.590573	-0.44462	-0.00019332	-2.7204	-0.0011829	-3.1651	-0.0013762	434.80199673130625	25.305	0.18883	25.305	25.135	25.324	0					8	4	2	0	0	0	0.027866	1	1175	1175		21.702	7.927	1	171660	+		25243	22580	17404	17442	29133	29133					0.15148146416129293
IGVVKKPK	8	Unmodified	_IGVVKKPK_					0	0	0			REV__ENST00000508926.1_1_17:47782482-47783697:-|nuORF	REV__ENST00000508926.1_1_17:47782482-47783697:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.77203369140625	2	434.802563	867.590573	0.5825	0.00025327	1.276	0.00055483	1.8586	0.0008081	434.803340360844	25.317	0.28682	25.397	25.336	25.622	0.08009					15	6	3	0	0	0	0.027866	1	1169	1169		21.702	0	1	280340	+		25244	22580	17404	17442	29134	29134					0.15148146416129293
IGWIPMGTE	9	Unmodified	_IGWIPMGTE_					0	0	0			REV__ENST00000551556.1_1_12:93965712-93966120:+|nuORF	REV__ENST00000551556.1_1_12:93965712-93966120:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2801818847656	2	502.249503	1002.48445	-0.45492	-0.00022848	0.65291	0.00032792	0.19799	9.9442E-05	502.75113877777653	34.766	0.19554	34.766	34.59	34.785	0					5	4	2	0	0	0	0.024487	1	2606	2606		31.955	11.473	1	23740	+		25245	34935	17405	17443	29135	29135					-0.016689772115114465
IGWKKPHSD	9	Unmodified	_IGWKKPHSD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2845458984375	2	534.285266	1066.55598	-0.25133	-0.00013428	-1.9882	-0.0010623	-2.2395	-0.0011966	534.2842429890858	107.92	0.62953	107.8	107.52	108.15	-0.12389					68	32	3	0	0	0	0.72875	1	13389	13389		44.117	13.799	1	2774900			25246	6479	17406	17444	29136	29136					0.025362785373772567
IGWNKQVSI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IGWNKQVSI_					1	0	0			REV__ENST00000383779.8_1_3:15614715-15637929:-|nuORF	REV__ENST00000383779.8_1_3:15614715-15637929:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.80224609375	2	543.800749	1085.58694	-0.98126	-0.00053361	3.2999	0.0017945	2.3187	0.0012609	543.80250044111	56.703	1.0714	56.801	56.397	57.468	0.097893					67	29	3	0	0	0	0.4752	1	6278	6278		60.972	9.6365	1	11152000	+		25247	31557	17407	17445	29137	29137					0.04757431851635374
IGYATLLRE	9	Unmodified	_IGYATLLRE_					0	0	0		nc|ENSG00000106069|P52757-9|CHN2;ENST00000491856.1_1_7:29438037-29440456:+|nuORF;ENSG00000106069|ENST00000222792|CHN2	nc|ENSG00000106069|P52757-9|CHN2	nc|ENSG00000106069|P52757-9|CHN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.295299	1034.57605	-0.1979	-0.00010257	3.8078	0.0019735	3.6099	0.001871	518.2973986074476	102.7	2.9604	102.7	101.67	104.63	-0.0046082					228	70	5	0	0	0	0.18915	2	13084	13084;13097		90.777	8.4716	1	70878000			25248	18154	17408	17446	29138;29139	29138					0.060140294773418645
IGYKPACKFYQ	11	Unmodified	_IGYKPACKFYQ_					0	0	0			REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.5302429199219	3	439.893519	1316.65873	-0.024663	-1.0849E-05	0.45301	0.00019927	0.42834	0.00018843	439.8930411347207	19.597	0.2467	19.436	19.282	19.529	-0.16079					6	4	2	0	0	0	0.024759	1	445	445		23.378	0.81632	1	7295.4	+		25249	22187	17409	17447	29140	29140					0.01306603213811286
IGYVDTTHW	9	Unmodified	_IGYVDTTHW_					0	0	0		nc|nan|Q6UWU4-3|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-3|C6orf89	nc|nan|Q6UWU4-3|C6orf89	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2610473632812	2	546.261456	1090.50836	0.86372	0.00047182	-0.72042	-0.00039354	0.1433	7.828E-05	546.260923096571	59.904	0.80214	59.706	59.46	60.262	-0.19742					56	20	4	0	0	0	0.14199	3	6649	6624;6635;6649		101.21	29.979	1	4095100			25250	10163	17410	17448	29141;29142;29143	29143					-0.03327420453479135
IGYVDTTHW	9	Unmodified	_IGYVDTTHW_					0	0	0		nc|nan|Q6UWU4-3|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-3|C6orf89	nc|nan|Q6UWU4-3|C6orf89	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2611083984375	2	546.261456	1090.50836	0.3786	0.00020682	-0.31574	-0.00017247	0.062866	3.4341E-05	546.2611401836673	59.751	0.8368	59.575	59.361	60.198	-0.1761					62	21	4	0	0	0	0.14199	3	6629	6607;6617;6629		101.21	29.334	1	4879600			25251	10163	17410	17448	29144;29145;29146	29146					-0.03327420453479135
IGYVDTTHW	9	Unmodified	_IGYVDTTHW_					0	0	0		nc|nan|Q6UWU4-3|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	nc|nan|Q6UWU4-3|C6orf89	nc|nan|Q6UWU4-3|C6orf89	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2606201171875	2	546.261456	1090.50836	-0.51506	-0.00028136	0.61329	0.00033502	0.098229	5.3659E-05	546.2616766600374	59.951	0.84298	59.702	59.457	60.3	-0.24842					60	21	4	0	0	0	0.10076	4	6623	6615;6623;6635;6651		110.34	36.082	1	4667800			25252	10163	17410	17448	29147;29148;29149;29150	29148					-0.03327420453479135
IHAAIDKEIN	10	Unmodified	_IHAAIDKEIN_					0	0	0			REV__ENSG00000088986|ENST00000242577|DYNLL1	REV__ENSG00000088986|ENST00000242577|DYNLL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3107299804688	2	562.308938	1122.60332	0.14969	8.4173E-05	3.3598	0.0018892	3.5095	0.0019734	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.31896	1	11005	11005		107.01	13.812	1	3232300	+		25253	20833	17411	17449	29151	29151					0.04692513017721467
IHADLCQL	8	Unmodified	_IHADLCQL_					0	0	0		nc|ENSG00000141030|Q9UNS2-2|COPS3;ENSG00000141030|ENST00000268717|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.75726318359375	2	456.73402	911.453487	-0.51269	-0.00023416	0.36932	0.00016868	-0.14337	-6.5481E-05	456.7341484865798	22.911	0.55421	22.726	22.415	22.969	-0.18539					19	11	2	0	0	0	0.027866	1	873	873		76.847	0	1	141950			25254	5466	17412	17450	29152	29152					-0.005781305257528402
IHAICSLLK	9	Unmodified	_IHAICSLLK_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.73797607421875	2	499.296788	996.579022	-0.40361	-0.00020152	3.9736	0.001984	3.57	0.0017825	499.2990650685558	33.713	0.43072	33.513	33.286	33.717	-0.20019					19	10	2	0	0	0	0.024405	1	2427	2427		44.117	0	1	308410			25255	6893	17413	17451	29153	29153					0.08059581330485344
IHAISEPGVL	10	Unmodified	_IHAISEPGVL_					0	0	0			REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2974243164062	2	518.295299	1034.57605	0.18652	9.6674E-05	3.2793	0.0016996	3.4658	0.0017963	518.2968764050886	102.52	1.719	102.39	101.41	103.13	-0.12666					79	41	4	0	0	0	0.68163	1	12767	12767		68.485	10.255	1	4753000	+		25256	21237	17414	17452	29154	29154					0.060140294773418645
IHAQMMKSV	9	Unmodified	_IHAQMMKSV_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7586059570312	2	522.77008	1043.52561	-0.58877	-0.00030779	3.6924	0.0019303	3.1037	0.0016225	522.7717692210666	41.308	0.58468	41.077	40.809	41.394	-0.2303					29	14	3	0	0	0	0.024292	1	3666	3666		49.442	32.968	1	311040	+		25257	20440	17415	17453	29155	29155					0.005584605563399236
IHARHLAGY	9	Unmodified	_IHARHLAGY_					0	0	0		ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	ENSG00000273820|ENST00000621775|USP27X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2870483398438	2	519.2856	1036.55665	0.69722	0.00036205	-1.9086	-0.00099113	-1.2114	-0.00062908	519.2844463639572	51.229	0.61555	51.117	50.786	51.401	-0.11163					48	15	5	0	0	0	0.52323	2	5257	5245;5257		57.811	7.7867	1	2058000			25258	11024	17416	17454	29156;29157	29157					0.039831179770771996
IHCDLLSKV	9	Unmodified	_IHCDLLSKV_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3106079101562	2	514.283877	1026.5532	-1.038	-0.00053382	-1.9734	-0.0010149	-3.0114	-0.0015487	514.2826377584983	65.12	0.62933	65.12	64.763	65.392	0					27	17	2	0	0	0	0.024292	1	7661	7661		68.787	31.628	1	535900	+		25259	19170	17417	17455	29158	29158					0.04098687088207953
IHCDLLSKV	9	Unmodified	_IHCDLLSKV_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.283877	1026.5532	-1.3603	-0.0006996	-2.6226	-0.0013488	-3.983	-0.0020484	514.28265290158	65.385	1.0264	65.178	64.854	65.881	-0.20695	0.03126	6.6198E-05	NaN	68.787	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1173600	+		25260	19170	17417	17455							0.04098687088207953
IHCDLLSKV	9	Unmodified	_IHCDLLSKV_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.283877	1026.5532	-0.4921	-0.00025308	-3.3462	-0.0017209	-3.8383	-0.001974	514.2822687490326	65.384	0.82077	65.133	64.823	65.644	-0.25112	-0.013489	-0.00067797	NaN	68.787	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	954910	+		25261	19170	17417	17455							0.04098687088207953
IHDGKAKSQ	9	Unmodified	_IHDGKAKSQ_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2713623046875	2	492.267073	982.519593	-0.41948	-0.0002065	-4.1485	-0.0020422	-4.568	-0.0022487	492.26955407909117	63.069	0.79543	63.069	62.651	63.447	0					53	20	4	0	0	0	0.024427	1	7368	7368		26.693	10.22	1	732740			25262	1040	17418	17456	29159	29159					0.027634016406636874
IHDLHLSYPKP	11	Unmodified	_IHDLHLSYPKP_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7457580566406	3	440.575067	1318.70337	-0.44234	-0.00019489	-0.30033	-0.00013232	-0.74267	-0.0003272	440.57502893267946	34.285	0.63209	34.11	33.781	34.413	-0.17557					18	15	2	0	0	0	0.024735	1	2539	2539		21.78	6.4429	1	132280	+		25263	25739	17419	17457	29160	29160					0.05676750351517512
IHDLHLSYPKP	11	Unmodified	_IHDLHLSYPKP_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	440.575067	1318.70337	-0.29262	-0.00012892	0.12505	5.5094E-05	-0.16757	-7.3825E-05	440.5750756375308	34.319	0.39459	34.112	33.931	34.326	-0.20696	0.0014268	0.00022929	NaN	21.78	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129220	+		25264	25739	17419	17457							0.05676750351517512
IHDLHQGI	8	Unmodified	_IHDLHQGI_					0	0	0		ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.7255554199219	2	466.751059	931.487565	-0.87422	-0.00040805	0.9584	0.00044733	0.084171	3.9287E-05	466.75140595340844	43.194	0.77419	42.968	42.675	43.449	-0.22597					39	20	3	0	0	0	0.027866	1	4006	4006		19.36	0	1	1095800			25265	6435	17420	17458	29161	29161					0.019080339575111793
IHDMSRDSCES	11	Unmodified	_IHDMSRDSCES_					0	0	0		nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	640.2178955078125	2	640.255719	1278.49689	0.26604	0.00017034	2.9491	0.0018882	3.2152	0.0020585	640.2557019695265	72.102	0.40617	71.84	71.598	72.004	-0.262					11	9	2	0	0	0	0.023689	1	8447	8447		104.75	8.5561	1	48996			25266	18177	17421	17459	29162	29162					-0.13122353601443137
IHDQDEEP	8	Unmodified	_IHDQDEEP_					0	0	0			REV__nc|ENSG00000165828|Q96NZ9-4|PRAP1	REV__nc|ENSG00000165828|Q96NZ9-4|PRAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2835998535156	2	491.709254	981.403954	0.7843	0.00038565	-0.61152	-0.00030069	0.17278	8.4957E-05	491.7088665118217	58.852	0.802	58.852	58.531	59.333	0					62	21	4	0	0	0	0.027866	1	6640	6640		38.806	1.647	1	1886900	+		25267	25937	17422	17460	29163	29163					-0.08749167000848956
IHEELDPA	8	Unmodified	_IHEELDPA_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.27972412109375	2	462.227082	922.439611	0.0392	1.8119E-05	0.24596	0.00011369	0.28516	0.00013181	462.22706044175027	47.676	0.56175	47.523	47.265	47.827	-0.15301					31	16	3	0	0	0	0.027866	1	4799	4799		28.254	0	1	525360			25268	4071	17423	17461	29164	29164					-0.02471084753199193
IHEKVLTK	8	Unmodified	_IHEKVLTK_					0	0	0		ENST00000422584.1_1_1:68628536-68628734:-|nuORF	ENST00000422584.1_1_1:68628536-68628734:-|nuORF	ENST00000422584.1_1_1:68628536-68628734:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.3011169433594	2	484.300384	966.586216	2.3438	0.0011351	-2.4282	-0.001176	-0.084367	-4.0859E-05	484.29908004567704	19.064	0.69282	18.831	18.582	19.275	-0.23345					31	13	3	0	0	0	1.0106	1	353	353		35.618	1.4457	1	142060			25269	14008	17424	17462	29165	29165					0.10158637202573573
IHEKVLTK	8	Unmodified	_IHEKVLTK_					0	0	0		ENST00000422584.1_1_1:68628536-68628734:-|nuORF	ENST00000422584.1_1_1:68628536-68628734:-|nuORF	ENST00000422584.1_1_1:68628536-68628734:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.300384	966.586216	0.64896	0.00031429	-0.38012	-0.00018409	0.26884	0.0001302	484.2998987082641	19.021	0.54469	18.86	18.639	19.183	-0.16079	0.0032815	0.00084698	NaN	35.618	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98562			25270	14008	17424	17462							0.10158637202573573
IHEKVLTK	8	Unmodified	_IHEKVLTK_					0	0	0		ENST00000422584.1_1_1:68628536-68628734:-|nuORF	ENST00000422584.1_1_1:68628536-68628734:-|nuORF	ENST00000422584.1_1_1:68628536-68628734:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.300384	966.586216	0.5231	0.00025334	-0.302	-0.00014626	0.2211	0.00010708	484.3000086695695	19.083	0.64307	18.88	18.609	19.252	-0.20371	0.022783	0.00092265	NaN	35.618	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138290			25271	14008	17424	17462							0.10158637202573573
IHERPEVW	8	Unmodified	_IHERPEVW_					0	0	0			REV__nc|ENSG00000166589|O75309-3|CDH16	REV__nc|ENSG00000166589|O75309-3|CDH16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.2754516601562	2	533.277441	1064.54033	-1.2606	-0.00067226	-1.9519	-0.0010409	-3.2126	-0.0017132	533.276068762615	49.57	1.2447	49.645	49.391	50.635	0.074192					63	35	4	0	0	0	0.78609	1	5064	5064		60.294	0	1	2826100	+		25272	26037	17425	17463	29166	29166					0.010639920203402653
IHFTGSLGL	9	Unmodified	_IHFTGSLGL_					0	0	0			REV__ENSG00000253598|ENST00000518568|SLC10A5	REV__ENSG00000253598|ENST00000518568|SLC10A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2530822753906	2	472.763635	943.512717	-0.59789	-0.00028266	0.20802	9.8346E-05	-0.38987	-0.00018432	472.76230889403416	30.065	0.25046	30.139	30.045	30.296	0.074314					7	5	2	0	0	0	0.024436	1	1866	1866		30.504	5.0535	1	21188	+		25273	29041	17426	17464	29167	29167					0.03870088760083945
IHGDLLPIN	9	Unmodified	_IHGDLLPIN_					0	0	0		nc|ENSG00000124171|Q9BYG5-2|PARD6B;ENSG00000124171|ENST00000371610|PARD6B	nc|ENSG00000124171|Q9BYG5-2|PARD6B	nc|ENSG00000124171|Q9BYG5-2|PARD6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.2829895019531	2	496.282192	990.549831	-0.89395	-0.00044365	-0.85923	-0.00042642	-1.7532	-0.00087007	496.2819611921701	43.845	0.73592	43.6	43.204	43.94	-0.2444					62	19	4	0	0	0	0.62163	1	4045	4045		51.335	3.4199	1	1981800			25274	4016	17427	17465	29168	29168					0.05417760305874708
IHGKRDLL	8	Unmodified	_IHGKRDLL_					0	0	0			REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2540283203125	2	476.290351	950.566149	-0.011259	-5.3624E-06	-1.2992	-0.00061878	-1.3104	-0.00062414	476.28938851640015	26.67	0.67865	26.647	26.446	27.124	-0.023088					29	16	3	0	0	0	0.027866	1	1390	1390		88.643	35.291	1	447820	+		25275	24400	17428	17466	29169	29169					0.08888886262604956
IHGKRDLL	8	Unmodified	_IHGKRDLL_					0	0	0			REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.2540283203125	2	476.290351	950.566149	-0.27958	-0.00013316	-0.24063	-0.00011461	-0.52022	-0.00024777	476.2899817679388	26.524	0.59158	26.605	26.331	26.923	0.081291					29	13	3	0	0	0	0.027866	1	1326	1326		45.952	0	1	386290	+		25276	24400	17428	17466	29170	29170					0.08888886262604956
IHGRKLKEIN	10	Unmodified	_IHGRKLKEIN_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.2473449707031	3	403.247173	1206.71969	0.89611	0.00036136	-1.6109	-0.00064959	-0.71477	-0.00028823	403.2465158777741	103.32	1.28	103.32	102.88	104.16	0					75	30	5	0	0	0	1.037	1	13267	13267		41.08	16.848	1	2354300			25277	3747	17429	17467	29171	29171					0.12459876308275852
IHGRKLKEIN	10	Unmodified	_IHGRKLKEIN_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.366943359375	2	604.367121	1206.71969	-1.0438	-0.00063086	0.55081	0.00033289	-0.49303	-0.00029797	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.0275	1	13175	13175		37.812	17.815	1	4517100			25278	3747	17429	17467	29172	29172					0.12459876308275852
IHGRVFNALVI	11	Unmodified	_IHGRVFNALVI_					0	0	0		ENST00000383746.7_2_3:44399709-44399838:+|nuORF	ENST00000383746.7_2_3:44399709-44399838:+|nuORF	ENST00000383746.7_2_3:44399709-44399838:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.869384765625	2	619.87204	1237.72953	-0.39228	-0.00024317	-3.8743	-0.0024016	-4.2666	-0.0026447	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.0442	1	12112	12112		26.693	1.1189	1	4658300			25279	13371	17430	17468	29173	29173					0.1201706431365892
IHHKGGKA	8	Unmodified	_IHHKGGKA_					0	0	0		nc|ENSG00000124233|P04279-2|SEMG1;ENSG00000124233|ENST00000372781|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.25054931640625	2	424.248486	846.48242	0.45724	0.00019398	4.1151	0.0017458	4.5723	0.0019398	424.2501970516105	102.85	2.0987	102.85	102.33	104.43	-0.0046005					96	50	3	0	0	0	1.0574	1	13087	13087		26.796	1.3459	1	7378400			25280	4033	17431	17469	29174	29174					0.05303774885567236
IHHKGGKA	8	Unmodified	_IHHKGGKA_					0	0	0		nc|ENSG00000124233|P04279-2|SEMG1;ENSG00000124233|ENST00000372781|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.25018310546875	2	424.248486	846.48242	0.53193	0.00022567	3.9354	0.0016696	4.4673	0.0018953	424.25021290018225	102.93	1.3282	102.8	102.23	103.56	-0.12724					83	31	4	0	0	0	1.0572	1	12768	12768		28.254	1.4582	1	6328600			25281	4033	17431	17469	29175	29175					0.05303774885567236
IHIHMHRE	8	Unmodified	_IHIHMHRE_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7559204101562	2	536.777085	1071.53962	-1.2142	-0.00065177	1.1431	0.00061361	-0.071105	-3.8168E-05	536.7779003197294	38.279	0.1251	38.061	37.957	38.083	-0.21848					7	3	3	0	0	0	0.027866	1	3135	3135		21.702	0	1	156470	+		25282	22298	17432	17470	29176	29176					0.006708740996373308
IHKAKWPS	8	Unmodified	_IHKAKWPS_					0	0	0			REV__ENST00000256062.9_2_12:29920912-29937294:-|nuORF	REV__ENST00000256062.9_2_12:29920912-29937294:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.6461486816406	2	483.779619	965.544686	-0.23771	-0.000115	-0.078194	-3.7829E-05	-0.3159	-0.00015283	483.779273292246	46.744	0.54449	46.551	46.415	46.959	-0.19387					22	15	2	0	0	0	0.027866	1	4511	4511		10.265	0	1	928430	+		25283	29548	17433	17471	29177	29177					0.06053501233895986
IHKASKYH	8	Unmodified	_IHKASKYH_					0	0	0			REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.27447509765625	2	492.274701	982.534849	-0.97648	-0.0004807	-0.55094	-0.00027121	-1.5274	-0.00075191	492.27432714502453	38.048	0.93858	37.966	37.706	38.645	-0.082516					79	25	4	0	0	0	0.845	1	3158	3158		55.504	0	1	8474200	+		25284	24760	17434	17472	29178	29178					0.04288313228516927
IHKLRNLSLN	10	Unmodified	_IHKLRNLSLN_					0	0	0			REV__TLR8|p.D645N|1|0.57|ENSG00000101916|chrX:12920973-12920973|G/A|missense_variant	REV__TLR8|p.D645N|1|0.57|ENSG00000101916|chrX:12920973-12920973|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.2472229003906	3	403.247173	1206.71969	0.86007	0.00034682	-1.2352	-0.00049809	-0.37512	-0.00015127	403.24679190087267	103.38	1.8075	103.25	102.9	104.71	-0.12724					103	45	4	0	0	0	1.1211	1	12869	12869		21.686	0	1	2106700	+		25285	37700	17435	17473	29179	29179					0.12459876308275852
IHKQRQKL	8	Unmodified	_IHKQRQKL_					0	0	0			REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.8299560546875	2	525.830175	1049.6458	1.172	0.00061629	-1.2291	-0.0006463	-0.05707	-3.0009E-05	525.829443678849	17.287	0.35154	17.133	16.957	17.308	-0.15403					17	6	3	0	0	0	1.0574	1	174	174		20.482	2.1574	1	429730	+		25286	27570	17436	17474	29180	29180					0.1229595293661987
IHLASSDV	8	Unmodified	_IHLASSDV_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000483731.5_1_16:2153201-2162466:-|nuORF;ENST00000415938.7_1_16:2152605-2162466:-|nuORF;ENST00000541836.5_1_16:15021147-15029115:+|nuORF;ENST00000339303.5_16:18434460-18437593:-|nuORF;ENST00000561991.5_1_16:2153598-2156273:-|nuORF	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.81842041015625	2	421.224342	840.434132	0.027799	1.171E-05	0.55481	0.0002337	0.58261	0.00024541	421.22443937822305	27.851	0.85048	27.699	27.312	28.162	-0.15195					33	20	3	0	0	0	0.027866	1	1578	1578		28.254	0	1	205380			25287	850	17437	17475	29181	29181					0.007532364550115744
IHLFPQLINL	10	Unmodified	_IHLFPQLINL_					0	0	0			REV__ENST00000502675.1_19:20577295-20577979:-|nuORF	REV__ENST00000502675.1_19:20577295-20577979:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.247802734375	3	403.24477	1206.71248	2.4029	0.00096894	2.8148	0.001135	5.2176	0.002104	403.2458644662001	103.38	1.2051	103.38	102.9	104.11	-0.0046005					76	28	5	0	0	0	1.1211	1	13176	13176		21.686	0.8486	1	2231700	+		25288	33939	17438	17476	29182	29182					0.11739143707859512
IHLFSLPIK	9	Unmodified	_IHLFSLPIK_					0	0	0		ENST00000478038.1_1_16:48612021-48612129:-|nuORF	ENST00000478038.1_1_16:48612021-48612129:-|nuORF	ENST00000478038.1_1_16:48612021-48612129:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.3311157226562	2	534.334227	1066.6539	-1.5957	-0.00085266	-3.0077	-0.0016071	-4.6034	-0.0024598	534.3325393157432	44.417	1.0204	44.272	43.958	44.978	-0.14471					76	29	4	0	0	0	0.25032	1	4208	4208		82.305	0.064519	1	6870200			25289	15125	17439	17477	29183	29183					0.12324087133356443
IHLKIQFY	8	Unmodified	_IHLKIQFY_					0	0	0		ENST00000314011.8_1_1:23688309-23688438:-|nuORF	ENST00000314011.8_1_1:23688309-23688438:-|nuORF	ENST00000314011.8_1_1:23688309-23688438:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8062744140625	2	531.310752	1060.60695	-1.5993	-0.00084974	1.688	0.00089686	0.088695	4.7125E-05	531.3114003289566	20.654	1.6105	20.654	19.831	21.441	0					47	32	2	0	0	0	0.027866	1	552	552		23.037	0	1	144880			25290	12112	17440	17478	29184	29184					0.07907227582222731
IHLPLPRSVPL	11	Unmodified	_IHLPLPRSVPL_					0	0	0		nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	nc|ENSG00000170291|Q8TE02-3|ELP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3927001953125	2	621.390065	1240.76558	0.38115	0.00023684	4.2822	0.0026609	4.6633	0.0028977	621.3925178018	103.51	0.68594	103.34	103.12	103.81	-0.17034					47	16	4	0	0	0	1.0399	1	12859	12859		27.882	2.3082	1	476900			25291	18504	17441	17479	29185	29185					0.1548252149052587
IHLVTRVM	8	Unmodified	_IHLVTRVM_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|2|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|2|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.7674255371094	2	484.78913	967.563706	-0.2795	-0.0001355	3.3583	0.0016281	3.0788	0.0014926	484.7907411312204	27.256	0.20673	27.014	26.869	27.076	-0.24217					5	4	2	0	0	0	0.027866	1	1489	1489		25.45	3.4903	1	61975	+		25292	36287	17442	17480	29186	29186					0.07862714533303006
IHMHMATQ	8	Unmodified	_IHMHMATQ_					0	0	0		ENST00000427832.2_1_1:111923053-111923173:+|nuORF	ENST00000427832.2_1_1:111923053-111923173:+|nuORF	ENST00000427832.2_1_1:111923053-111923173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.2588806152344	2	484.725672	967.436791	-0.18146	-8.7957E-05	-0.49526	-0.00024007	-0.67672	-0.00032802	484.7252612572617	27.371	0.59789	27.129	26.911	27.509	-0.24217					25	13	3	0	0	0	0.027866	1	1535	1535		33.516	3.0119	1	191190			25293	14120	17443	17481	29187	29187					-0.04822954683345415
IHNKSIKKK	9	Unmodified	_IHNKSIKKK_					0	0	0			REV__PCDH19|p.D785H|1|0.4|ENSG00000165194|chrX:100402787-100402787|C/G|missense_variant	REV__PCDH19|p.D785H|1|0.4|ENSG00000165194|chrX:100402787-100402787|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3114013671875	2	548.353483	1094.69241	-0.65144	-0.00035722	-1.899	-0.0010413	-2.5504	-0.0013985	548.352426995709	56.158	0.17125	56.158	56.07	56.241	0					5	4	2	0	0	0	0.024495	1	6235	6235		42.396	5.237	1	65986	+		25294	37355	17444	17482	29188	29188					0.14885392767882877
IHNLEDRLKK	10	Unmodified	_IHNLEDRLKK_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.58197021484375	3	422.582333	1264.72517	0.051062	2.1578E-05	-0.96778	-0.00040897	-0.91672	-0.00038739	422.58183891194597	96.092	3.0594	95.935	94.749	97.808	-0.15646					209	69	4	0	0	0	1.0992	1	11842	11842		24.232	4.2013	1	593240			25295	5759	17445	17483	29189	29189					0.10339555100040343
IHPAGPSK	8	Unmodified	_IHPAGPSK_					0	0	0		ENSG00000139405|ENST00000548278|RITA1;nc|ENSG00000139405|Q96K30-3|RITA1	ENSG00000139405|ENST00000548278|RITA1	ENSG00000139405|ENST00000548278|RITA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.811279296875	2	403.729595	805.444637	0.28128	0.00011356	1.9471	0.0007861	2.2284	0.00089966	403.7294541746802	28.481	1.0046	28.312	27.807	28.812	-0.16897					42	23	3	0	0	0	0.027866	1	1677	1677		26.796	5.0938	1	78974			25296	5333	17446	17484	29190	29190					0.034132639000858944
IHPALHRPW	9	Unmodified	_IHPALHRPW_					0	0	0		ENST00000443925.6_1_2:3217921-3261148:-|nuORF;ENST00000478754.5_1_2:3200751-3261145:-|nuORF	ENST00000443925.6_1_2:3217921-3261148:-|nuORF	ENST00000443925.6_1_2:3217921-3261148:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.7218627929688	2	563.817067	1125.61958	0.057736	3.2552E-05	0.024821	1.3994E-05	0.082556	4.6547E-05	564.3190695780742	50.048	0.52164	49.769	49.51	50.031	-0.27977					21	13	2	0	0	0	0.024535	1	5045	5045		25.45	4.5032	1	202840			25297	14408	17447	17485	29191	29191					0.06179683765139998
IHPRGLPSSS	10	Unmodified	_IHPRGLPSSS_					0	0	0		nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.78955078125	2	525.788173	1049.56179	1.2727	0.00066917	2.1155	0.0011123	3.3882	0.0017815	525.7891303268246	17.057	0.55336	16.903	16.706	17.259	-0.15403					28	10	4	0	0	0	1.1329	1	142	142		27.882	2.3082	1	388910			25298	18163	17448	17486	29192	29192					0.03899377049060604
IHQEKLENI	9	Unmodified	_IHQEKLENI_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3112182617188	2	562.308938	1122.60332	0.044339	2.4932E-05	3.5196	0.0019791	3.5639	0.002004	562.3107990391446	87.524	1.615	87.524	87.152	88.767	0					122	38	4	0	0	0	0.14024	1	11058	11058		101.6	5.7855	1	2858300			25299	2351	17449	17487	29193	29193					0.04692513017721467
IHQEKLENI	9	Unmodified	_IHQEKLENI_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3121337890625	2	562.308938	1122.60332	-0.19585	-0.00011013	3.5204	0.0019796	3.3246	0.0018694	562.3107934625109	87.455	0.70832	87.276	86.986	87.695	-0.17875					44	16	4	0	0	0	0.067814	1	10629	10629		122.18	12.056	1	861590			25300	2351	17449	17487	29194	29194					0.04692513017721467
IHQEKLENI	9	Unmodified	_IHQEKLENI_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	562.308938	1122.60332	0.50693	0.00028505	2.7973	0.0015729	3.3042	0.001858	562.3104344464497	87.379	0.75547	87.243	86.926	87.682	-0.13613	-0.15173	-0.00049609	NaN	122.18	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	923100			25301	2351	17449	17487							0.04692513017721467
IHQLVLEH	8	Unmodified	_IHQLVLEH_					0	0	0		nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	nc|ENSG00000010539|P98182-3|ZNF200	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7816162109375	2	494.782359	987.550165	-0.062766	-3.1056E-05	-1.0819	-0.00053528	-1.1446	-0.00056634	494.7816042761908	65.879	0.88897	65.909	65.348	66.237	0.030098					71	23	5	0	0	0	1.0574	1	7778	7778		15.636	0	1	10887000			25302	878	17450	17488	29195	29195					0.0558918002569726
IHQNTESW	8	Unmodified	_IHQNTESW_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7354736328125	2	507.735606	1013.45666	-0.23692	-0.00012029	0.17922	9.0997E-05	-0.057695	-2.9294E-05	507.73566466638937	39.762	0.93723	39.613	39.357	40.294	-0.1497					58	24	4	0	0	0	0.33369	3	3389	3378;3389;3403		106.42	7.7858	1	5937900	+		25303	26005	17451	17489	29196;29197;29198	29197					-0.0495316414737772
IHQNTESW	8	Unmodified	_IHQNTESW_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7360534667969	2	507.735606	1013.45666	-0.46538	-0.00023629	0.55777	0.0002832	0.092391	4.691E-05	507.73586336683655	39.909	0.95659	39.678	39.352	40.308	-0.23021					65	24	4	0	0	0	0.39824	2	3412	3388;3412		97.473	3.2834	1	5986400	+		25304	26005	17451	17489	29199;29200	29200					-0.0495316414737772
IHRKVAQIFV	10	Unmodified	_IHRKVAQIFV_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.8713989257812	2	605.874582	1209.73461	-0.60045	-0.0003638	-3.6392	-0.0022049	-4.2397	-0.0025687	605.8721410970385	98.62	1.0824	98.616	98.307	99.389	-0.0038834					72	24	4	0	0	0	1.1267	1	12515	12515		29.15	2.4566	1	1075200			25305	9292	17452	17490	29201	29201					0.13813368176238328
IHRLAAKTQSL	11	Unmodified	_IHRLAAKTQSL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.3701171875	2	619.372404	1236.73025	-0.1507	-9.3342E-05	-2.2911	-0.0014191	-2.4418	-0.0015124	619.370979083808	100.11	0.78519	100.11	99.704	100.49	0					55	19	4	0	0	0	1.0344	1	12812	12812		29.17	4.6509	1	1092500	+		25306	23585	17453	17491	29202	29202					0.121358589627107
IHRLAAKTQSL	11	Unmodified	_IHRLAAKTQSL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.3705444335938	2	619.372404	1236.73025	-0.16048	-9.9398E-05	-2.2219	-0.0013762	-2.3824	-0.0014756	619.3709137357778	100.17	0.80694	100.04	99.717	100.52	-0.12504					57	24	3	0	0	0	1.0017	1	12451	12451		36.447	9.3994	1	1136500	+		25307	23585	17453	17491	29203	29203					0.121358589627107
IHRRVHIRRVR	11	Unmodified	_IHRRVHIRRVR_					0	0	0			REV__ENST00000566842.5_1_16:29918195-29922616:-|nuORF	REV__ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7672119140625	3	499.98691	1496.9389	-0.49772	-0.00024885	0.8562	0.00042809	0.35849	0.00017924	500.32293214983906	40.521	0.30925	40.544	40.387	40.696	0.023006					11	8	2	0	0	0	0.02489	1	3528	3528		9.2118	4.0694	1	93170	+		25308	26906	17454	17492	29204	29204					0.21030745110124371
IHSMRVQI	8	Unmodified	_IHSMRVQI_					0	0	0		nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000154928|ENST00000398015|EPHB1	nc|ENSG00000154928|P54762-5|EPHB1	nc|ENSG00000154928|P54762-5|EPHB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2739562988281	2	492.276386	982.53822	-0.97648	-0.0004807	-3.9746	-0.0019566	-4.9511	-0.0024373	492.27432714502453	38.048	0.93858	37.966	37.706	38.645	-0.082516					79	25	4	0	0	0	0.74904	1	3136	3136		63.306	3.0123	1	8474200			25309	6443	17455	17493	29205	29205					0.04625240010886955
IHSTFVALVL	10	Unmodified	_IHSTFVALVL_					0	0	0			REV__L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|30|1|anti-sense	REV__L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|30|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3260498046875	2	550.329142	1098.64373	0.081598	4.4906E-05	-3.345	-0.0018409	-3.2634	-0.001796	550.3276499365805	98.961	0.92738	98.957	98.596	99.523	-0.0038834					49	20	3	0	0	0	1.0142	1	12580	12580		44.117	6.9577	1	255790	+		25310	36205	17456	17494	29206	29206					0.09835479408138781
IHTTVPSPT	9	Unmodified	_IHTTVPSPT_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.27740478515625	2	476.758549	951.502546	0.78417	0.00037386	4.1321	0.00197	4.9162	0.0023439	476.7603312386582	19.54	0.44801	19.34	19.007	19.455	-0.2001					11	8	2	0	0	0	0.024436	1	397	397		23.042	0	1	33916			25311	18030	17457	17495	29207	29207					0.024854810348642786
IHTVRATW	8	Unmodified	_IHTVRATW_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110902031-110920682:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.27423095703125	2	492.274701	982.534849	-1.8302	-0.00090097	0.92125	0.00045351	-0.90897	-0.00044747	492.2750669558031	38.3	0.88152	38.327	37.849	38.731	0.027275					59	24	4	0	0	0	0.42327	1	3138	3138		94.006	5.3636	1	9280700			25312	18351	17458	17496	29208	29208					0.04288313228505558
IHTVRATW	8	Unmodified	_IHTVRATW_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110902031-110920682:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	492.274701	982.534849	-1.0619	-0.00052273	-0.48904	-0.00024074	-1.5509	-0.00076347	492.27435575245823	38.128	0.81085	38.128	37.869	38.68	0	0.044811	-0.00069894	NaN	94.006	44	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9807400			25313	18351	17458	17496							0.04288313228505558
IHTVRATW	8	Unmodified	_IHTVRATW_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110902031-110920682:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.274701	982.534849	-1.1011	-0.00054204	0.07234	3.5611E-05	-1.0288	-0.00050643	492.27440435277873	38.189	0.50581	38.01	37.876	38.381	-0.17929	-0.073053	-0.00014624	NaN	94.006	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174700			25314	18351	17458	17496							0.04288313228505558
IHTVRATW	8	Unmodified	_IHTVRATW_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110902031-110920682:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.274701	982.534849	-0.69085	-0.00034009	0.43081	0.00021208	-0.26004	-0.00012801	492.27443138223396	38.272	0.85639	38.051	37.832	38.688	-0.22148	-0.032222	0.00020669	NaN	94.006	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184480			25315	18351	17458	17496							0.04288313228505558
IHTVRATW	8	Unmodified	_IHTVRATW_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110902031-110920682:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.274701	982.534849	-0.4245	-0.00020897	0.04534	2.232E-05	-0.37916	-0.00018665	492.2738420111309	38.235	0.88448	38.016	37.792	38.676	-0.21849	-0.066525	-0.00017282	NaN	94.006	36	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340560			25316	18351	17458	17496							0.04288313228505558
IHTYPVLN	8	Unmodified	_IHTYPVLN_					0	0	0			REV__ENST00000425085.1_1_21:24780104-24780850:-|nuORF	REV__ENST00000425085.1_1_21:24780104-24780850:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7842712402344	2	478.763635	955.512717	0.21411	0.00010251	0.99326	0.00047554	1.2074	0.00057804	478.76345481926876	66.897	0.57471	66.897	66.63	67.205	0					27	13	3	0	0	0	0.027866	1	8011	8011		19.36	11.67	1	241980	+		25317	32245	17459	17497	29209	29209					0.033180887601020004
IHVERKSF	8	Unmodified	_IHVERKSF_					0	0	0			REV__ENST00000557151.5_3_14:72054459-72054531:+|nuORF	REV__ENST00000557151.5_3_14:72054459-72054531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2868957519531	2	508.287808	1014.56106	0.36012	0.00018304	-0.61737	-0.0003138	-0.25725	-0.00013075	508.2873679415835	52.919	1.1511	52.66	52.326	53.477	-0.25839					47	29	2	0	0	0	0.81662	1	5519	5519		57.811	4.4598	1	2406100	+		25318	35059	17460	17498	29210	29210					0.05436582400000134
IHVIHLET	8	Unmodified	_IHVIHLET_					0	0	0		ENST00000465942.1_1_13:46065604-46085992:+|nuORF;nc|ENSG00000136152|Q96JB2-2|COG3;ENSG00000136152|ENST00000349995|COG3	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7430114746094	2	481.276909	960.539266	0.13068	6.2891E-05	-0.17097	-8.2285E-05	-0.040297	-1.9394E-05	481.2766959829961	45.723	0.71355	45.723	45.342	46.056	0					24	20	2	0	0	0	0.027866	1	4402	4402		39.021	5.5059	1	254790			25319	4987	17461	17499	29211	29211					0.05741777651439861
IHWIAFFIL	9	Unmodified	_IHWIAFFIL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	580.80810546875	2	580.33677	1158.65899	0.4745	0.00027537	2.7065	0.0015707	3.181	0.0018461	580.3385831491979	100.45	0.28653	100.31	100.17	100.46	-0.13364					11	6	2	0	0	0	0.024541	1	12464	12464		21.702	0	1	98508	+		25320	24281	17462	17500	29212	29212					0.08600390995979978
IHWIAFFIL	9	Unmodified	_IHWIAFFIL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	580.33677	1158.65899	-0.91668	-0.00053198	3.7791	0.0021932	2.8624	0.0016612	580.3391995051943	100.3	0.31261	100.3	100.18	100.49	0	0.002849	0.00071892	NaN	39.021	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81459	+		25321	24281	17462	17500							0.08600390995979978
IHWIAFFIL	9	Unmodified	_IHWIAFFIL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	580.33677	1158.65899	-0.62039	-0.00036003	3.8005	0.0022055	3.1801	0.0018455	580.3392439809363	100.22	0.22256	100.23	100.17	100.39	0.010117	-0.066325	0.00074369	NaN	39.021	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53704	+		25322	24281	17462	17500							0.08600390995979978
IHWIAFFIL	9	Unmodified	_IHWIAFFIL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	580.33677	1158.65899	0.29497	0.00017118	2.2179	0.0012871	2.5129	0.0014583	580.3386140685802	100.34	0.22568	100.34	100.25	100.47	-0.0050812	0.038113	-0.0010931	NaN	39.021	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63629	+		25323	24281	17462	17500							0.08600390995979978
IHWMIRRKV	9	Unmodified	_IHWMIRRKV_					0	0	0			REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8715209960938	2	619.868777	1237.723	0.089003	5.517E-05	0.91891	0.0005696	1.0079	0.00062477	619.8691214704253	104.81	0.62352	104.69	104.38	105	-0.12561					43	18	3	0	0	0	1.0051	1	13070	13070		19.36	0.25645	1	171530	+		25324	27396	17463	17501	29213	29213					0.11364847881282003
IHYPEKYNV	9	Unmodified	_IHYPEKYNV_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.2888793945312	2	581.798206	1161.58186	-0.68477	-0.0003984	0.5751	0.00033459	-0.10967	-6.3804E-05	581.7985281731228	97.247	0.58441	97.085	96.862	97.446	-0.16106					33	12	4	0	0	0	0.024477	1	12051	12051		20.947	0.95016	1	248790			25325	6206	17464	17502	29214	29214					0.007531279889917641
IHYPEKYNV	9	Unmodified	_IHYPEKYNV_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	581.798206	1161.58186	0.72146	0.00041975	-0.68491	-0.00039848	0.036556	2.1268E-05	581.7976701521235	97.224	0.63199	97.088	96.791	97.423	-0.1367	-0.025448	-0.00075237	NaN	20.947	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244090			25326	6206	17464	17502							0.007531279889917641
IHYPEKYNV	9	Unmodified	_IHYPEKYNV_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.798206	1161.58186	0.2399	0.00013958	-0.29054	-0.00016904	-0.050635	-2.946E-05	581.7980921688353	97.29	0.97887	97.166	96.795	97.774	-0.12368	0.053092	-0.00029349	NaN	20.947	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260310			25327	6206	17464	17502							0.007531279889917641
IHYQADVRLEA	11	Unmodified	_IHYQADVRLEA_					0	0	0		ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.9006652832031	3	438.89821	1313.6728	3.0412	0.0013348	2.4564	0.0010781	5.4976	0.0024129	438.8993020009547	18.253	0.49083	18.253	17.99	18.48	0					22	9	3	0	0	0	1.0074	1	260	260		35.178	3.1441	1	187950			25328	3878	17465	17503	29215	29215					0.028509719664725708
IHYRKKKQL	9	Unmodified	_IHYRKKKQL_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.3770751953125	2	607.380032	1212.74551	-0.37498	-0.00022776	-4.4271	-0.0026889	-4.8021	-0.0029167	607.3772016993306	97.913	0.61599	97.748	97.351	97.967	-0.16521					25	14	2	0	0	0	0.83071	1	12080	12080		37.159	2.9866	1	263070			25329	14060	17466	17504	29216	29216					0.14764770550573303
IHYRKKKQL	9	Unmodified	_IHYRKKKQL_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	607.380032	1212.74551	-1.0698	-0.00064978	-3.1434	-0.0019092	-4.2132	-0.002559	607.3780230672708	97.661	0.82259	97.661	97.325	98.148	0	-0.0082743	0.00091769	NaN	37.159	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366750			25330	14060	17466	17504							0.14764770550573303
IHYRKKKQL	9	Unmodified	_IHYRKKKQL_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	607.380032	1212.74551	-0.30953	-0.000188	-3.8583	-0.0023434	-4.1678	-0.0025315	607.3775916140798	97.678	0.73053	97.676	97.367	98.097	-0.0020752	0.0069543	4.9272E-05	NaN	37.159	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272430			25331	14060	17466	17504							0.14764770550573303
IHYVLDRRRTL	11	Unmodified	_IHYVLDRRRTL_					0	0	0		nc|ENSG00000113532|Q92187-2|ST8SIA4;ENSG00000113532|ENST00000231461|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.2830810546875	3	481.284398	1440.83137	0.3888	0.00018713	-2.2325	-0.0010745	-1.8437	-0.00088733	481.28322550437986	101.41	2.0202	101.23	100.66	102.68	-0.17178					149	48	5	0	0	0	1.0563	1	12588	12588		23.378	4.8469	1	742900			25332	3300	17467	17505	29217	29217					0.12858310665387762
IIAESGGLPR	10	Unmodified	_IIAESGGLPR_					0	0	0		nc|ENSG00000204681|Q9UBS5-4|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7776794433594	2	506.792924	1011.57129	-0.56865	-0.00028819	1.4363	0.00072788	0.86761	0.0004397	506.79302994967657	49.968	1.0751	49.968	49.437	50.512	0					42	30	2	0	0	0	0.03519	1	5113	5113		49.442	26.862	1	229240			25333	18665	17468	17506	29218	29218					0.06597145334581
IIAFPRSYKV	10	Unmodified	_IIAFPRSYKV_					0	0	0		ENSG00000234719|ENST00000399147|NPIPB2	ENSG00000234719|ENST00000399147|NPIPB2	ENSG00000234719|ENST00000399147|NPIPB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8565063476562	2	597.355691	1192.69683	-0.47193	-0.00028191	-1.6987	-0.0010148	-2.1707	-0.0012967	597.3537728093169	103.83	1.2432	103.82	103.23	104.47	-0.0032196					82	29	5	0	0	0	1.089	1	13227	13227		34.173	6.0911	1	650120			25334	10723	17469	17507	29219	29219					0.10818857190770359
IIAGFLYTI	9	Unmodified	_IIAGFLYTI_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.79888916015625	2	505.799686	1009.58482	-0.89988	-0.00045516	-2.3172	-0.001172	-3.2171	-0.0016272	505.7983780077611	80.737	0.92451	80.761	80.445	81.37	0.023911					49	22	3	0	0	0	0.60698	1	9956	9956		52.299	2.2746	1	1326500			25335	4216	17470	17508	29220	29220					0.080410031138058
IIAITDSIN	9	Unmodified	_IIAITDSIN_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.73541259765625	2	480.274032	958.533512	0.06194	2.9748E-05	0.74767	0.00035909	0.80961	0.00038884	480.27425011617447	60.003	0.41043	59.754	59.571	59.982	-0.24842					17	10	2	0	0	0	0.024457	1	6642	6642		29.15	10.825	1	171730	+		25336	20933	17471	17509	29221	29221					0.05258634349104341
IIAKIQQVS	9	Unmodified	_IIAKIQQVS_					0	0	0		ENST00000483315.1_1_21:33975401-33976611:-|nuORF	ENST00000483315.1_1_21:33975401-33976611:-|nuORF	ENST00000483315.1_1_21:33975401-33976611:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7779846191406	2	500.313492	998.612431	0.53726	0.0002688	-0.64608	-0.00032324	-0.10882	-5.4442E-05	500.31290008111364	69.769	0.62593	69.476	69.129	69.754	-0.29291					22	15	2	0	0	0	0.024405	1	8325	8325		27.882	3.6795	1	213390			25337	15280	17472	17510	29222	29222					0.11306906374045411
IIALKCGHK	9	Unmodified	_IIALKCGHK_					0	0	0			REV__ENSG00000068784|ENST00000263736|SRBD1	REV__ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7962646484375	2	491.796955	981.579357	-0.20623	-0.00010142	-1.9893	-0.00097835	-2.1956	-0.0010798	491.7957748473887	47.704	1.5509	47.704	46.623	48.174	0					133	44	4	0	0	0	0.67308	1	4859	4859		47.916	3.3845	1	6134900	+		25338	20387	17473	17511	29223	29223					0.08783001050346684
IIALKCGHK	9	Unmodified	_IIALKCGHK_					0	0	0			REV__ENSG00000068784|ENST00000263736|SRBD1	REV__ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.79571533203125	2	491.796955	981.579357	-0.8897	-0.00043755	-1.34	-0.00065903	-2.2297	-0.0010966	491.79612149361634	47.571	1.5221	47.63	46.587	48.109	0.059097					127	43	4	0	0	0	0.70186	1	4783	4783		45.952	8.9235	1	6614300	+		25339	20387	17473	17511	29224	29224					0.08783001050346684
IIARAPRKT	9	Unmodified	_IIARAPRKT_					0	0	0			REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.30810546875	2	513.33255	1024.65055	-0.48219	-0.00024753	-0.20211	-0.00010375	-0.68431	-0.00035128	513.3322825714974	46.25	0.4761	46.302	45.998	46.474	0.051399					22	13	2	0	0	0	0.024506	1	4484	4484		23.042	0	1	354990	+		25340	36849	17474	17512	29225	29225					0.13920837079353987
IIASYDQVD	9	Unmodified	_IIASYDQVD_					0	0	0			REV__ENSG00000142733|ENST00000357582|MAP3K6	REV__ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2536010742188	2	512.253297	1022.49204	-0.47089	-0.00024122	0.7964	0.00040796	0.32551	0.00016674	512.253782438945	54.125	2.449	54.125	53.655	56.104	0					199	69	5	0	0	0	0.53979	1	5993	5993		56.721	6.6965	1	29802000	+		25341	24181	17475	17513	29226	29226					-0.01830546410246825
IIATNKFL	8	Unmodified	_IIATNKFL_					0	0	0			REV__ENST00000528684.5_1_11:67565540-67568567:-|nuORF	REV__ENST00000528684.5_1_11:67565540-67568567:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.2840576171875	2	460.284203	918.553853	-1.1723	-0.0005396	0.85279	0.00039253	-0.31952	-0.00014707	460.284367401358	65.538	1.8501	65.325	64.528	66.378	-0.21328					119	45	4	0	0	0	0.845	1	7525	7525		55.504	7.5886	1	2954800	+		25342	34499	17476	17514	29227	29227					0.09131849799553038
IIAVARWGP	9	Unmodified	_IIAVARWGP_					0	0	0			REV__ENST00000556405.1_1_14:45251866-45252022:-|nuORF	REV__ENST00000556405.1_1_14:45251866-45252022:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.79583740234375	2	491.795269	981.575986	-0.20623	-0.00010142	1.4377	0.00070706	1.2315	0.00060564	491.7957748473887	47.704	1.5509	47.704	46.623	48.174	0					133	44	4	0	0	0	0.67308	1	4847	4847		47.916	0	1	6134900	+		25343	35035	17477	17515	29228	29228					0.08446074267988024
IIAVLVSAS	9	Unmodified	_IIAVLVSAS_					0	0	0		ENSG00000147378|ENST00000370350|FATE1	ENSG00000147378|ENST00000370350|FATE1	ENSG00000147378|ENST00000370350|FATE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.77484130859375	2	436.776211	871.537869	-0.98134	-0.00042863	-2.2927	-0.0010014	-3.2741	-0.00143	436.7751362763108	90.163	2.4309	90.008	89.479	91.91	-0.1552					175	57	5	0	0	0	0.90698	1	11060	11060		31.955	5.1588	1	32770000			25344	5958	17478	17516	29229	29229					0.09696143562666748
IICCQYLPA	9	Unmodified	_IICCQYLPA_					0	0	0			REV__ENSG00000116199|ENST00000263733|FAM20B	REV__ENSG00000116199|ENST00000263733|FAM20B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2532958984375	2	512.253731	1022.49291	-0.12497	-6.4016E-05	-1.4346	-0.00073488	-1.5596	-0.0007989	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.72268	1	5830	5830		44.531	2.0566	1	54943000	+		25345	22268	17479	17517	29230	29230					-0.01743746566558002
IICCQYLPA	9	Unmodified	_IICCQYLPA_					0	0	0			REV__ENSG00000116199|ENST00000263733|FAM20B	REV__ENSG00000116199|ENST00000263733|FAM20B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2535400390625	2	512.253731	1022.49291	0.46489	0.00023814	-1.5496	-0.00079378	-1.0847	-0.00055564	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.52323	1	5818	5818		57.811	3.0466	1	42815000	+		25346	22268	17479	17517	29231	29231					-0.01743746566558002
IICFLALAVS	10	Unmodified	_IICFLALAVS_					0	0	0			REV__ENST00000513853.5_1_11:28724169-28724340:+|nuORF	REV__ENST00000513853.5_1_11:28724169-28724340:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2379150390625	2	525.306821	1048.59909	-1.0864	-0.00057071	3.8675	0.0020316	2.7811	0.0014609	525.3085088340429	44.435	0.64081	44.33	44.064	44.705	-0.10468					33	16	3	0	0	0	0.03519	1	4147	4147		37.159	0	1	629510	+		25347	34158	17480	17518	29232	29232					0.07673332270428546
IICGLLTRVT	10	Unmodified	_IICGLLTRVT_					0	0	0		ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2828369140625	2	544.828452	1087.64235	0.060792	3.3121E-05	0.07754	4.2246E-05	0.13833	7.5367E-05	544.8283812093739	50.776	0.51625	50.5	50.262	50.778	-0.27643					24	13	2	0	0	0	0.03519	1	5194	5194		44.117	19.914	1	510270			25348	8822	17481	17519	29233	29233					0.10203522047731894
IICVGIVFPL	10	Unmodified	_IICVGIVFPL_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.8152465820312	2	537.325014	1072.63547	-0.89658	-0.00048176	1.7001	0.00091348	0.80348	0.00043173	537.3255630799074	76.799	0.45195	76.57	76.279	76.731	-0.22843					20	10	3	0	0	0	0.03519	1	9450	9450		26.796	0	1	706470			25349	5381	17482	17520	29234	29234					0.10206209167154157
IIDAAFRKN	9	Unmodified	_IIDAAFRKN_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7986450195312	2	524.300916	1046.58728	-0.035759	-1.8748E-05	-2.7275	-0.0014301	-2.7633	-0.0014488	524.29940580536	71.485	0.57435	71.209	70.699	71.273	-0.27509					23	12	3	0	0	0	0.024466	1	8326	8326		31.53	6.0796	1	2241100	+		25350	26922	17483	17521	29235	29235					0.06584851571483341
IIDARTHQI	9	Unmodified	_IIDARTHQI_					0	0	0			REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8035278320312	2	533.803823	1065.59309	-0.59358	-0.00031686	0.27294	0.0001457	-0.32064	-0.00017116	533.8038738775194	42.176	0.99662	42.044	41.678	42.674	-0.13219					87	28	5	0	0	0	0.26966	1	3839	3839		79.713	13.283	1	3395700	+		25351	32145	17484	17522	29236	29236					0.06291950083141273
IIDARTHQI	9	Unmodified	_IIDARTHQI_					0	0	0			REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.803823	1065.59309	-0.27055	-0.00014442	-0.081546	-4.3529E-05	-0.3521	-0.00018795	533.8037308051277	41.969	0.88161	41.969	41.688	42.569	0	-0.086815	-0.00020462	NaN	79.713	76	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3497600	+		25352	32145	17484	17522							0.06291950083141273
IIDARTHQI	9	Unmodified	_IIDARTHQI_					0	0	0			REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	533.803823	1065.59309	-0.59358	-0.00031686	0.27294	0.0001457	-0.32064	-0.00017116	533.8038738775194	42.176	0.99662	42.044	41.678	42.674	-0.13219	-0.011965	0.00017383	NaN	79.713	87	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3395700	+		25353	32145	17484	17522							0.06291950083141273
IIDARTHQI	9	Unmodified	_IIDARTHQI_					0	0	0			REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.803823	1065.59309	-0.5293	-0.00028254	0.12546	6.6973E-05	-0.40384	-0.00021557	533.8038233455073	42.129	0.74848	42.155	41.893	42.641	0.026012	0.09878	1.6383E-05	NaN	79.713	72	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3515400	+		25354	32145	17484	17522							0.06291950083141273
IIDASRRAP	9	Unmodified	_IIDASRRAP_					0	0	0		ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27117919921875	2	499.790715	997.566878	-0.39547	-0.00019765	0.26386	0.00013187	-0.13161	-6.578E-05	499.7907270226895	22.229	0.56973	22.154	21.841	22.411	-0.075296					19	11	2	0	0	0	0.024457	1	749	749		21.96	0	1	152300			25355	9114	17485	17523	29237	29237					0.06799680911660744
IIDCELVKG	9	Unmodified	_IIDCELVKG_					0	0	0			REV__ENSG00000173914|ENST00000310046|RBM4B	REV__ENSG00000173914|ENST00000310046|RBM4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2971496582031	2	495.270435	988.526318	-1.0171	-0.00050373	2.0693	0.0010249	1.0522	0.00052112	495.2712119510504	54.14	0.48884	54.004	53.837	54.326	-0.13617					22	14	2	0	0	0	0.024436	1	5789	5789		38.806	5.9937	1	175930	+		25356	26820	17486	17524	29238	29238					0.031595784770274804
IIDEDCMKY	9	Oxidation (M)	_IIDEDCM(Oxidation (M))KY_		IIDEDCM(1)KY		IIDEDCM(77)KY	0	0	1			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.2464599609375	2	573.2463	1144.47805	-0.35314	-0.00020244	0.24587	0.00014095	-0.10727	-6.1493E-05	573.2463374571449	73.681	0.58876	73.416	73.099	73.687	-0.26479					39	14	4	0	0	0	0.29158	1	8679	8679		76.774	13.468	1	1028300	+		25357	23875	17487	17525	29239	29239		706			-0.0884128322518336
IIDEDCMKY	9	Oxidation (M)	_IIDEDCM(Oxidation (M))KY_					0	0	1			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	573.2463	1144.47805	-1.4504	-0.00083144	0.3542	0.00020304	-1.0962	-0.00062839	573.2469590497642	73.201	0.40358	73.201	73.034	73.438	0	-0.12693	0.00029229	NaN	76.774	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121270	+		25358	23875	17487	17525				706			-0.0884128322518336
IIDEDCMKY	9	Oxidation (M)	_IIDEDCM(Oxidation (M))KY_					0	0	1			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	573.2463	1144.47805	-0.27829	-0.00015953	-0.68137	-0.0003906	-0.95967	-0.00055013	573.2461653782809	73.603	0.40872	73.331	73.09	73.499	-0.27126	0.0035739	-0.00089498	NaN	76.774	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147560	+		25359	23875	17487	17525				706			-0.0884128322518336
IIDEDCMKY	9	Oxidation (M)	_IIDEDCM(Oxidation (M))KY_					0	0	1			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	573.2463	1144.47805	-0.76579	-0.00043898	0.039352	2.2559E-05	-0.72644	-0.00041643	573.2462543370625	73.297	0.53844	73.307	72.901	73.44	0.0096512	-0.020715	-6.8672E-05	NaN	76.774	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128540	+		25360	23875	17487	17525				706			-0.0884128322518336
IIDEDCMKY	9	Oxidation (M)	_IIDEDCM(Oxidation (M))KY_					0	0	1			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	573.2463	1144.47805	-0.06008	-3.4441E-05	0.12457	7.1408E-05	0.064488	3.6967E-05	573.2461679874714	73.691	0.67296	73.414	73.051	73.724	-0.2769	0.086658	2.9027E-05	NaN	76.774	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1047900	+		25361	23875	17487	17525				706			-0.0884128322518336
IIDEDCMKY	9	Oxidation (M)	_IIDEDCM(Oxidation (M))KY_					0	0	1			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	573.2463	1144.47805	-0.26272	-0.0001506	0.0584	3.3477E-05	-0.20432	-0.00011712	573.2461396349331	73.487	0.55596	73.297	73.047	73.602	-0.19026	-0.030836	-4.6834E-05	NaN	76.774	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1005100	+		25362	23875	17487	17525				706			-0.0884128322518336
IIDFFWTL	8	Unmodified	_IIDFFWTL_					0	0	0		ENSG00000121377|ENST00000240687|TAS2R7	ENSG00000121377|ENST00000240687|TAS2R7	ENSG00000121377|ENST00000240687|TAS2R7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.74853515625	2	527.784036	1053.55352	0.53605	0.00028292	-4.3036	-0.0022714	-3.7676	-0.0019885	527.7816048441606	84.601	0.80779	84.463	84.02	84.828	-0.13789					40	18	3	0	0	0	0.027866	1	10262	10262		26.796	3.7536	1	614110			25363	3868	17488	17526	29240	29240					0.028884300797017204
IIDGNPET	8	Unmodified	_IIDGNPET_					0	0	0		ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7372131347656	2	429.713808	857.413062	-0.48479	-0.00020832	3.3708	0.0014485	2.886	0.0012401	429.7152030315622	40.068	0.67273	39.956	39.64	40.312	-0.11222					33	17	3	0	0	0	0.027866	1	3470	3470		24.203	1.1603	1	769270			25364	1718	17489	17527	29241	29241					-0.021347736445136434
IIDGNPET	8	Unmodified	_IIDGNPET_					0	0	0		ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	ENSG00000081870|ENST00000194214|IFT25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.7375183105469	2	429.713808	857.413062	0.01887	8.1088E-06	2.3942	0.0010288	2.4131	0.0010369	429.71475433312185	40.027	0.44843	39.878	39.629	40.078	-0.1497					20	11	2	0	0	0	0.027866	1	3424	3424		31.955	19.748	1	594640			25365	1718	17489	17527	29242	29242					-0.021347736445136434
IIDHHDNTY	9	Unmodified	_IIDHHDNTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2592163085938	2	564.259445	1126.50434	-0.38843	-0.00021918	-0.17717	-9.9968E-05	-0.5656	-0.00031915	564.2593559270335	27.256	1.2599	27.013	26.744	28.004	-0.24217					89	29	5	0	0	0	0.013887	4	1504	1481;1492;1504;1519		211.39	129.15	1	6713500			25366	9935	17490	17528	29243;29244;29245;29246	29245					-0.05385509947177525
IIDHHDNTY	9	Unmodified	_IIDHHDNTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2591552734375	2	564.259445	1126.50434	-0.42174	-0.00023797	-0.11826	-6.6727E-05	-0.54	-0.0003047	564.2593787992512	27.106	1.1309	26.938	26.638	27.768	-0.16816					80	26	5	0	0	0	0.014034	4	1473	1453;1461;1473;1487		211.39	120.61	1	5598100			25367	9935	17490	17528	29247;29248;29249;29250	29249					-0.05385509947177525
IIDHHDNTY	9	Unmodified	_IIDHHDNTY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.25927734375	2	564.259445	1126.50434	-0.42938	-0.00024228	-0.083728	-4.7244E-05	-0.51311	-0.00028953	564.2594037035458	27.242	1.1216	27.085	26.758	27.88	-0.15664					79	26	5	0	0	0	0.014034	4	1482	1447;1455;1469;1482		211.39	120.61	1	5842800			25368	9935	17490	17528	29251;29252;29253;29254	29254					-0.05385509947177525
IIDLHCFY	8	Unmodified	_IIDLHCFY_					0	0	0			REV__ENSG00000127129|ENST00000372587|EDN2	REV__ENSG00000127129|ENST00000372587|EDN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2539672851562	2	512.252046	1022.48954	-0.12497	-6.4016E-05	1.8556	0.00095053	1.7306	0.00088651	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.94001	1	5854	5854		46.766	0.81448	1	54943000	+		25369	22919	17491	17529	29255	29255					-0.020806733488939244
IIDPIPTI	8	Unmodified	_IIDPIPTI_					0	0	0			REV__ENST00000462628.5_1_19:55144679-55146115:+|nuORF	REV__ENST00000462628.5_1_19:55144679-55146115:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.226318359375	2	441.270761	880.52697	-0.38017	-0.00016776	-2.4774	-0.0010932	-2.8576	-0.001261	441.2695423212703	30.053	0.6538	30.062	29.677	30.331	0.0086708					22	15	2	0	0	0	0.027866	1	1846	1846		19.36	0	1	139430	+		25370	32906	17492	17530	29256	29256					0.08192741188372565
IIDQHTFEV	9	Unmodified	_IIDQHTFEV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.2820434570312	2	551.282389	1100.55022	-0.40858	-0.00022524	0.12424	6.8491E-05	-0.28434	-0.00015675	551.2823694757044	57.207	0.56363	57.207	56.968	57.532	0					38	14	3	0	0	0	0.020687	1	6430	6430		148.99	33.493	1	2765100			25371	7763	17493	17531	29257	29257					0.003971352350390589
IIDQHTFEV	9	Unmodified	_IIDQHTFEV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2821044921875	2	551.282389	1100.55022	-0.0026202	-1.4445E-06	-0.38905	-0.00021448	-0.39167	-0.00021592	551.2820706816699	57.386	0.71499	57.211	56.931	57.646	-0.1749					54	18	4	0	0	0	0.030064	1	6430	6430		141.52	32.042	1	2795800			25372	7763	17493	17531	29258	29258					0.003971352350390589
IIDQHTFEV	9	Unmodified	_IIDQHTFEV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.2820434570312	2	551.282389	1100.55022	-0.55923	-0.00030829	0.13752	7.5812E-05	-0.42171	-0.00023248	551.2823052261351	57.051	0.58271	57.147	56.846	57.429	0.095306					53	15	4	0	0	0	0.020687	1	6326	6326		148.99	44.93	1	2590800			25373	7763	17493	17531	29259	29259					0.003971352350390589
IIDQHTFEV	9	Unmodified	_IIDQHTFEV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.282389	1100.55022	-0.73941	-0.00040762	2.3119	0.0012745	1.5724	0.00086686	551.2835481184095	57.39	0.40483	57.222	57.001	57.406	-0.1672	0.016799	0.0023218	NaN	148.99	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	746790			25374	7763	17493	17531							0.003971352350390589
IIDSIMALF	9	Unmodified	_IIDSIMALF_					0	0	0		nc|ENSG00000100206|Q14565-2|DMC1;ENSG00000100206|ENST00000216024|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.7823486328125	2	511.783179	1021.5518	0.021065	1.0781E-05	2.9925	0.0015315	3.0136	0.0015423	511.784628457217	59.103	0.98569	59.189	58.921	59.906	0.085682					83	26	5	0	0	0	0.31247	1	6688	6688		73.975	2.5968	1	9392600			25375	2148	17494	17532	29260	29260					0.04189052999458909
IIDTRENSY	9	Unmodified	_IIDTRENSY_					0	0	0		ZNF679|p.H206D|1|0.31|ENSG00000197123|chr7:64266249-64266249|C/G|missense_variant	ZNF679|p.H206D|1|0.31|ENSG00000197123|chr7:64266249-64266249|C/G|missense_variant	ZNF679|p.H206D|1|0.31|ENSG00000197123|chr7:64266249-64266249|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.79833984375	2	555.774928	1109.5353	0.091261	5.0721E-05	2.8128	0.0015633	2.9041	0.001614	555.77629839767	20.946	2.2135	20.769	19.9	22.113	-0.17721					83	45	3	0	0	0	0.024539	1	680	680		14.865	0.20078	1	126890			25376	38206	17495	17533	29261	29261					-0.015083566329394671
IIEAKPPKV	9	Unmodified	_IIEAKPPKV_					0	0	0		ENST00000402456.4_1_19:43414555-43422019:-|nuORF;ENSG00000170848|ENST00000187910|PSG6;nc|ENSG00000170848|Q00889|PSG6	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2735595703125	2	497.81841	993.622267	0.49055	0.0002442	-1.699	-0.00084578	-1.2084	-0.00060157	497.8173048037019	40.006	0.33265	40.006	39.879	40.212	0					14	8	2	0	0	0	0.024205	1	3497	3497		53.351	23.034	1	129570			25377	13684	17496	17534	29262	29262					0.12520094379419788
IIEAKPPKV	9	Unmodified	_IIEAKPPKV_					0	0	0		ENST00000402456.4_1_19:43414555-43422019:-|nuORF;ENSG00000170848|ENST00000187910|PSG6;nc|ENSG00000170848|Q00889|PSG6	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2728576660156	2	497.81841	993.622267	-0.66548	-0.00033129	-0.0052077	-2.5925E-06	-0.67069	-0.00033388	497.8182904695298	40.305	0.2981	40.328	40.126	40.424	0.023006					11	7	2	0	0	0	0.024457	1	3468	3468		29.15	8.2026	1	171130			25378	13684	17496	17534	29263	29263					0.12520094379419788
IIEDGNNNNY	10	Unmodified	_IIEDGNNNNY_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.3340454101562	2	583.259642	1164.50473	0.038145	2.2249E-05	3.7255	0.0021729	3.7636	0.0021952	583.2619531254976	84.905	0.66179	84.746	84.53	85.192	-0.15869					25	15	2	0	0	0	0.03519	1	10285	10285		74.255	11.277	1	274680	+		25379	20933	17497	17535	29264	29264					-0.0709413501799645
IIEILGIPE	9	Unmodified	_IIEILGIPE_					0	0	0			REV__ENST00000307145.3_2_15:31667478-31667742:+|nuORF	REV__ENST00000307145.3_2_15:31667478-31667742:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.8039245605469	2	498.802426	995.590298	0.48095	0.0002399	1.8911	0.00094327	2.372	0.0011832	498.80328376618695	53.002	1.465	52.743	52.326	53.791	-0.25838					117	39	6	0	0	0	0.92825	1	5535	5535		30.504	3.7075	1	22222000	+		25380	30130	17498	17536	29265	29265					0.09232681905609752
IIEKIDIYTD	10	Unmodified	_IIEKIDIYTD_					0	0	0		CON__P21578	CON__P21578	CON__P21578	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	611.3549194335938	2	611.831911	1221.64927	-1.4729	-0.00090118	1.7204	0.0010526	0.24752	0.00015144	611.8329809831315	93.761	0.16145	93.767	93.689	93.85	0.0059891					5	3	2	0	0	0	0.03519	1	11849	11849		26.693	0	1	32093		+	25381	527	17499	17537	29266	29266					0.047311134092979046
IIEKLPCL	8	Unmodified	_IIEKLPCL_					0	0	0			REV__ENST00000473559.5_2_4:87855692-87855851:-|nuORF	REV__ENST00000473559.5_2_4:87855692-87855851:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7952575683594	2	464.780439	927.546325	-1.2906	-0.00059983	-1.4418	-0.00067014	-2.7324	-0.00127	464.7811359393439	33.978	0.35036	33.802	33.622	33.972	-0.17557					11	8	2	0	0	0	0.027866	1	2434	2434		53.351	0	1	71621	+		25382	33240	17500	17538	29267	29267					0.07965374207628884
IIEKQLKLA	9	Unmodified	_IIEKQLKLA_					0	0	0			REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7718505859375	2	528.344792	1054.67503	-1.0383	-0.00054857	1.2428	0.00065665	0.20457	0.00010808	528.3451270502395	55.831	0.39527	55.674	55.499	55.894	-0.15655					15	10	2	0	0	0	0.024487	1	5996	5996		31.955	2.8053	1	199930	+		25383	30233	17501	17539	29268	29268					0.14988052442231492
IIELNCLTD	9	Unmodified	_IIELNCLTD_					0	0	0		nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X;FAM199X|p.D385Qfs*7|1|0.07|ENSG00000123575|chrX:104189762-104189763|-/TCAAATCCTTC|frameshift_variant	nc|ENSG00000123575|Q6PEV8-2|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2691650390625	2	517.26535	1032.51615	-0.17745	-9.1789E-05	2.6369	0.001364	2.4594	0.0012722	517.7692017247832	51.067	0.36676	51.067	50.845	51.212	0					11	9	2	0	0	0	0.024381	1	5375	5375		21.96	0	1	95110			25384	3987	17502	17540	29269	29269					0.0011897075175966165
IIEMQKGDC	9	Unmodified	_IIEMQKGDC_					0	0	0		ENSG00000213809|ENST00000240618|KLRK1;ENST00000540267.5_1_12:10525715-10532097:-|nuORF	ENSG00000213809|ENST00000240618|KLRK1	ENSG00000213809|ENST00000240618|KLRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7793579101562	2	518.743728	1035.4729	-0.27388	-0.00014208	-3.3239	-0.0017243	-3.5978	-0.0018663	518.7416262142526	51.727	0.26882	51.727	51.568	51.836	0					11	7	2	0	0	0	0.023837	1	5481	5481		74.255	2.8771	1	103050			25385	10524	17503	17541	29270	29270					-0.04341542297129308
IIEQTEIEDQ	10	Unmodified	_IIEQTEIEDQ_					0	0	0			REV__MTHFS|p.E65Q|1|0.4|ENSG00000136371|chr15:79889279-79889279|C/G|missense_variant	REV__MTHFS|p.E65Q|1|0.4|ENSG00000136371|chr15:79889279-79889279|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	3	406.534714	1216.58231	-0.50645	-0.00020589	2.0854	0.0008478	1.579	0.00064191	406.53548763523	27.097	0.59349	26.941	26.672	27.266	-0.15664					23	13	2	0	0	0	0.03519	1	1470	1470		29.551	4.4248	1	55843	+		25386	36398	17504	17542	29271	29271					-0.017315418724592746
IIERASYT	8	Unmodified	_IIERASYT_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54951111-54953173:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7578125	2	476.758549	951.502546	0.34901	0.00016639	-1.4907	-0.00071071	-1.1417	-0.00054432	476.75772494847956	103.11	2.084	103.12	102.24	104.32	0.0054245					130	51	5	0	0	0	1.0009	2	13235	13235;13272		37.159	8.4046	1	5192800			25387	1362	17505	17543	29272;29273	29272					0.024854810348415413
IIERASYT	8	Unmodified	_IIERASYT_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54951111-54953173:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.758056640625	2	476.758549	951.502546	0.59757	0.0002849	-1.8144	-0.00086505	-1.2169	-0.00058015	476.7575883352349	103.57	1.7067	103.44	102.86	104.57	-0.12723					123	42	4	0	0	0	0.94517	2	12912	12912;12971		45.952	5.2042	1	2742400			25388	1362	17505	17543	29274;29275	29274					0.024854810348415413
IIERASYT	8	Unmodified	_IIERASYT_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54951111-54953173:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.758056640625	2	476.758549	951.502546	-0.30085	-0.00014343	-0.97006	-0.00046248	-1.2709	-0.00060592	476.75800283223526	103.64	1.2436	103.51	102.91	104.16	-0.12783					67	32	3	0	0	0	0.94517	1	12926	12926		45.952	7.1458	1	2423600			25389	1362	17505	17543	29276	29276					0.024854810348415413
IIERTGHKM	9	Unmodified	_IIERTGHKM_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.79541015625	2	542.800226	1083.5859	-1.4879	-0.00080763	0.9792	0.00053151	-0.5087	-0.00027612	542.8006500844306	40.228	0.68888	40.251	39.873	40.562	0.023006					57	18	4	0	0	0	0.53979	1	3476	3476		56.721	5.3856	1	998830			25390	37	17506	17544	29277	29277					0.047448942110577264
IIESKFVNN	9	Unmodified	_IIESKFVNN_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7980346679688	2	532.292756	1062.57096	-0.067509	-3.5934E-05	2.3261	0.0012382	2.2586	0.0012022	532.2940221696081	102.05	0.88081	102.05	101.62	102.5	-0.0054474					39	19	3	0	0	0	0.024323	1	12949	12949		53.351	0	1	96047	+		25391	28725	17507	17545	29278	29278					0.04217725614716983
IIESVREQGDA	11	Unmodified	_IIESVREQGDA_					0	0	0			REV__ENSG00000163083|ENST00000295228|INHBB	REV__ENSG00000163083|ENST00000295228|INHBB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	3	406.210453	1215.60953	-0.38904	-0.00015803	1.7589	0.00071447	1.3698	0.00055643	406.21110549241837	27.305	0.72003	27.148	26.844	27.564	-0.15664					47	16	4	0	0	0	0.86757	1	1470	1470		53.597	2.0691	1	1138700	+		25392	25530	17508	17546	29279	29279					0.010349864585805335
IIESVREQGDA	11	Unmodified	_IIESVREQGDA_					0	0	0			REV__ENSG00000163083|ENST00000295228|INHBB	REV__ENSG00000163083|ENST00000295228|INHBB	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	406.210453	1215.60953	0.089712	3.6442E-05	1.2332	0.00050093	1.3229	0.00053737	406.2108622078549	27.262	0.9265	27.093	26.723	27.649	-0.16816	-0.034424	-0.00024647	NaN	53.597	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1173800	+		25393	25530	17508	17546							0.010349864585805335
IIESVREQGDA	11	Unmodified	_IIESVREQGDA_					0	0	0			REV__ENSG00000163083|ENST00000295228|INHBB	REV__ENSG00000163083|ENST00000295228|INHBB	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	406.210453	1215.60953	-0.38904	-0.00015803	1.7589	0.00071447	1.3698	0.00055643	406.21110549241837	27.305	0.72003	27.148	26.844	27.564	-0.15664	0.020447	0.00039415	NaN	53.597	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1138700	+		25394	25530	17508	17546							0.010349864585805335
IIFAVFVSGV	10	Unmodified	_IIFAVFVSGV_					0	0	0			REV__ENSG00000180730|ENST00000319420|SHISA2	REV__ENSG00000180730|ENST00000319420|SHISA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2783203125	2	526.312961	1050.61137	-0.57656	-0.00030345	3.3271	0.0017511	2.7506	0.0014477	526.3145907571661	85.415	1.9604	85.358	84.32	86.28	-0.05761					86	46	2	0	0	0	0.03519	1	10572	10572		24.203	2.2429	1	166780	+		25395	27357	17509	17547	29280	29280					0.08808692005140983
IIFETPLRV	9	Unmodified	_IIFETPLRV_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.3287353515625	2	544.329142	1086.64373	-0.13334	-7.2579E-05	-0.6107	-0.00033242	-0.74404	-0.000405	544.3288124968727	72.038	1.7188	72.038	71.68	73.399	0					107	43	5	0	0	0	0.015901	6	8768	8735;8745;8757;8768;8780;8794		157.33	38.586	1	18847000			25396	3392	17510	17548	29281;29282;29283;29284;29285;29286	29284					0.10387479408132094
IIFETPLRV	9	Unmodified	_IIFETPLRV_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.3253784179688	2	544.329142	1086.64373	-0.022079	-1.2018E-05	-0.9083	-0.00049441	-0.93038	-0.00050643	544.3286030082942	72.341	1.4995	72.06	71.731	73.231	-0.28124					103	37	5	0	0	0	0.033448	4	8749	8749;8761;8773;8798		138.83	16.65	1	16396000			25397	3392	17510	17548	29287;29288;29289;29290	29287					0.10387479408132094
IIFETPLRV	9	Unmodified	_IIFETPLRV_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.327880859375	2	544.329142	1086.64373	-0.20926	-0.0001139	-0.78013	-0.00042465	-0.98939	-0.00053855	544.3286761180352	72.038	1.637	72.048	71.728	73.365	0.0097733					111	41	5	0	0	0	0.015901	5	8691	8667;8679;8691;8715;8730		157.33	43.917	1	18674000			25398	3392	17510	17548	29291;29292;29293;29294;29295	29293					0.10387479408132094
IIFEVILVF	9	Unmodified	_IIFEVILVF_					0	0	0			REV__ENSG00000212127|ENST00000537503|TAS2R14	REV__ENSG00000212127|ENST00000537503|TAS2R14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8409423828125	2	546.838811	1091.66307	-0.15909	-8.6997E-05	2.3051	0.0012605	2.146	0.0011735	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	0.96855	1	12827	12827		26.796	4.8362	1	11254000	+		25399	28717	17511	17549	29296	29296					0.12090435699042246
IIFEVILVF	9	Unmodified	_IIFEVILVF_					0	0	0			REV__ENSG00000212127|ENST00000537503|TAS2R14	REV__ENSG00000212127|ENST00000537503|TAS2R14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.84033203125	2	546.838811	1091.66307	0.39821	0.00021775	2.0404	0.0011158	2.4386	0.0013335	546.8399841843885	99.748	1.3784	99.613	99.184	100.56	-0.13526					99	37	6	0	0	0	0.85941	2	12408	12329;12408		35.201	9.7505	1	10192000	+		25400	28717	17511	17549	29297;29298	29298					0.12090435699042246
IIFFSRVPSK	10	Unmodified	_IIFFSRVPSK_					0	0	0		ENST00000590655.1_1_19:44436750-44438596:-|nuORF;ENST00000588432.1_1_19:44435494-44438596:-|nuORF;ENST00000269973.9_1_19:44429548-44438596:-|nuORF	ENST00000590655.1_1_19:44436750-44438596:-|nuORF	ENST00000590655.1_1_19:44436750-44438596:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8579711914062	2	597.355691	1192.69683	-0.47193	-0.00028191	-1.6987	-0.0010148	-2.1707	-0.0012967	597.3537728093169	103.83	1.2432	103.82	103.23	104.47	-0.0032196					82	29	5	0	0	0	1.1179	1	13212	13212		19.997	1.6724	1	650120			25401	11640	17512	17550	29299	29299					0.10818857190793096
IIFGLFFVRS	10	Unmodified	_IIFGLFFVRS_					0	0	0			REV__ENST00000220562.8_1_8:28573241-28573340:+|nuORF	REV__ENST00000220562.8_1_8:28573241-28573340:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.87567138671875	3	400.237615	1197.69102	0.85441	0.00034197	2.4705	0.00098877	3.3249	0.0013307	400.2385423537987	37.433	0.38798	37.24	37.002	37.39	-0.193					12	9	2	0	0	0	0.03519	1	3025	3025		15.333	0	1	66393	+		25402	29342	17513	17551	29300	29300					0.100077586791258
IIFGSDIGAS	10	Unmodified	_IIFGSDIGAS_					0	0	0			REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.26220703125	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	1.0781	1	13195	13195		35.618	2.1253	1	4976900	+		25403	26238	17514	17552	29301	29301					0.012100613149868877
IIFHDETL	8	Unmodified	_IIFHDETL_					0	0	0		DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.82861328125	2	494.260925	986.507297	0.73168	0.00036164	-2.1126	-0.0010442	-1.3809	-0.00068253	494.25970495183697	105.49	0.50614	105.49	105.36	105.87	0					18	13	2	0	0	0	0.027866	1	13588	13588		25.45	0	1	106380			25404	665	17515	17553	29302	29302					0.01350365177609092
IIFHDETL	8	Unmodified	_IIFHDETL_					0	0	0		DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.260925	986.507297	0.074063	3.6606E-05	-1.4447	-0.00071405	-1.3706	-0.00067744	494.2600882507248	105.5	0.52037	105.5	105.29	105.81	0.00096893	-0.027209	0.00012557	NaN	18.324	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104930			25405	665	17515	17553							0.01350365177609092
IIFHDETL	8	Unmodified	_IIFHDETL_					0	0	0		DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	DOK6|p.S89L|1|0.23|ENSG00000206052|chr18:69599475-69599475|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.260925	986.507297	0.080795	3.9934E-05	-1.2338	-0.00060981	-1.153	-0.00056988	494.2599999491204	105.61	0.31876	105.61	105.47	105.79	0.00014496	0.073377	0.00033404	NaN	18.324	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106970			25406	665	17515	17553							0.01350365177609092
IIFLGKVLV	9	Unmodified	_IIFLGKVLV_					0	0	0		nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2917785644531	2	501.341521	1000.66849	-0.95381	-0.00047818	0.55634	0.00027892	-0.39747	-0.00019927	501.341843669131	84.087	0.43314	84.014	83.83	84.264	-0.072769					11	9	2	0	0	0	0.024517	1	10492	10492		26.796	8.4717	1	26425			25407	5604	17516	17554	29303	29303					0.1681815928150172
IIFLLAGVAI	10	Unmodified	_IIFLLAGVAI_					0	0	0			REV__ENST00000558394.5_1_15:77348162-77363449:-|nuORF	REV__ENST00000558394.5_1_15:77348162-77363449:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3133544921875	2	515.338978	1028.6634	-0.40446	-0.00020843	3.3341	0.0017182	2.9296	0.0015097	515.341751228548	88.121	0.2383	87.951	87.893	88.131	-0.17054					9	5	2	0	0	0	0.03519	1	10735	10735		19.36	0	1	59401	+		25408	24011	17517	17555	29304	29304					0.15021855418899577
IIFLMTILL	9	Unmodified	_IIFLMTILL_					0	0	0			REV__ENSG00000162511|ENST00000294507|LAPTM5	REV__ENSG00000162511|ENST00000294507|LAPTM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3270874023438	2	538.843039	1075.67153	-0.79012	-0.00042575	2.1925	0.0011814	1.4024	0.00075567	538.8442881322179	99.764	0.18376	99.593	99.451	99.634	-0.17088					7	4	2	0	0	0	0.024541	1	12361	12361		19.36	0	1	99918	+		25409	25449	17518	17556	29305	29305					0.13671666344021105
IIFLVLAPV	9	Unmodified	_IIFLVLAPV_					0	0	0			REV__nc|ENSG00000138172|Q9HA72-3|CALHM2	REV__nc|ENSG00000138172|Q9HA72-3|CALHM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2872009277344	2	492.828246	983.64194	0.061016	3.0071E-05	-3.9708	-0.0019569	-3.9098	-0.0019269	492.8261389294152	67.437	0.59348	67.461	67.23	67.824	0.023911					30	14	3	0	0	0	0.024475	1	8013	8013		29.842	0	1	323310	+		25410	23831	17519	17557	29306	29306					0.14946470390168543
IIFLVLAPV	9	Unmodified	_IIFLVLAPV_					0	0	0			REV__nc|ENSG00000138172|Q9HA72-3|CALHM2	REV__nc|ENSG00000138172|Q9HA72-3|CALHM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.828246	983.64194	0.16325	8.0454E-05	-3.9196	-0.0019317	-3.7564	-0.0018512	492.8261373575596	67.399	0.51824	67.399	67.088	67.606	0	-0.037267	2.5847E-05	NaN	21.702	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294990	+		25411	23831	17519	17557							0.14946470390168543
IIFLYYAY	8	Unmodified	_IIFLYYAY_					0	0	0		ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.27001953125	2	533.286411	1064.55827	-0.31241	-0.0001666	3.4843	0.0018581	3.1719	0.0016915	533.2881011432253	50.467	0.52343	50.188	49.953	50.477	-0.27977					41	13	4	0	0	0	0.027866	1	5101	5101		24.504	2.5441	1	1606600			25412	2021	17520	17558	29307	29307					0.028573142224786352
IIFNLSPNN	9	Unmodified	_IIFNLSPNN_					0	0	0		ENST00000470012.1_1_2:73959253-73964442:-|nuORF;ENST00000497464.5_1_2:73957656-73964442:-|nuORF;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB;nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENST00000489476.5_1_2:73956300-73964431:-|nuORF;ENST00000463231.5_1_2:73956300-73964442:-|nuORF	ENST00000470012.1_1_2:73959253-73964442:-|nuORF	ENST00000470012.1_1_2:73959253-73964442:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2879638671875	2	516.279649	1030.54475	-0.14714	-7.5965E-05	-1.0744	-0.00055467	-1.2215	-0.00063063	516.2789382929051	34.369	0.34154	34.145	33.997	34.339	-0.22412					14	8	2	0	0	0	0.024397	1	2531	2531		39.253	0.44669	1	243270			25413	5714	17521	17559	29308	29308					0.030694564432451443
IIFPKFPDL	9	Unmodified	_IIFPKFPDL_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7900390625	2	545.320786	1088.62702	-0.29147	-0.00015894	-3.0865	-0.0016831	-3.378	-0.0018421	545.3186917617093	59.739	0.6253	59.538	59.136	59.761	-0.20016					30	16	3	0	0	0	0.024447	1	6742	6742		32.812	1.2826	1	343050	+		25414	22693	17522	17560	29309	29309					0.08624978522175297
IIFQHFLE	8	Unmodified	_IIFQHFLE_					0	0	0		ENST00000488033.5_1_3:121372652-121379717:-|nuORF	ENST00000488033.5_1_3:121372652-121379717:-|nuORF	ENST00000488033.5_1_3:121372652-121379717:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3235473632812	2	523.78711	1045.55967	-0.39489	-0.00020684	-1.9522	-0.0010225	-2.3471	-0.0012294	523.78597748461	67.439	0.601	67.151	66.992	67.593	-0.28834					19	14	2	0	0	0	0.027866	1	8034	8034		52.299	0	1	269290			25415	15383	17523	17561	29310	29310					0.03870948311259781
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3232421875	2	513.323328	1024.6321	-0.44737	-0.00022964	0.63717	0.00032708	0.1898	9.7431E-05	513.3234886079016	96.945	1.156	96.945	96.615	97.771	0					89	25	5	0	0	0	0.049708	6	12388	12352;12362;12374;12388;12401;12414		128.82	59.691	1	1525000			25416	8210	17524	17562	29311;29312;29313;29314;29315;29316	29314					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.3234252929688	2	513.323328	1024.6321	0.51751	0.00026565	-0.47785	-0.00024529	0.039665	2.0361E-05	513.322935643895	96.854	1.2835	96.863	96.487	97.77	0.0089111					78	28	4	0	0	0	0.075871	5	12316	12305;12316;12328;12341;12360		119.22	47.458	1	1547700			25417	8210	17524	17562	29317;29318;29319;29320;29321	29318					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3235473632812	2	513.323328	1024.6321	0.62281	0.0003197	-0.51919	-0.00026651	0.10361	5.3186E-05	513.322901168521	97.034	1.1985	97.034	96.572	97.771	-3.0518E-05					88	26	5	0	0	0	0.075871	7	12276	12276;12287;12298;12311;12324;12338;12350		119.22	50.374	1	1718100			25418	8210	17524	17562	29322;29323;29324;29325;29326;29327;29328	29322					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.3240966796875	2	513.323328	1024.6321	0.67662	0.00034732	-0.21394	-0.00010982	0.46268	0.0002375	513.3230185400292	96.83	0.93877	96.693	96.346	97.285	-0.13671					41	20	4	0	0	0	0.55828	1	11956	11956		55.504	12.64	1	285400			25419	8210	17524	17562	29329	29329					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.3240356445312	2	513.323328	1024.6321	0.8563	0.00043956	-0.74985	-0.00038491	0.10645	5.4645E-05	513.3227376101628	96.81	0.80267	96.687	96.396	97.198	-0.12305					40	17	3	0	0	0	0.36105	1	11970	11970		68.485	22.028	1	452210			25420	8210	17524	17562	29330	29330					0.12077282384802857
IIFVPVPQL	9	Unmodified	_IIFVPVPQL_					0	0	0		ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	ENST00000479123.1_1_2:3623223-3624265:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.32373046875	2	513.323328	1024.6321	-0.22654	-0.00011629	0.29995	0.00015397	0.073414	3.7685E-05	513.3232534621285	96.915	0.62241	96.754	96.462	97.084	-0.16106					33	13	3	0	0	0	0.33184	2	11967	11967;11979		71.378	5.4805	1	302560			25421	8210	17524	17562	29331;29332	29331					0.12077282384802857
IIFYIRHE	8	Unmodified	_IIFYIRHE_					0	0	0		LRP1B|p.S1265Y|1|0.29|ENSG00000168702|chr2:140886308-140886308|G/T|missense_variant	LRP1B|p.S1265Y|1|0.29|ENSG00000168702|chr2:140886308-140886308|G/T|missense_variant	LRP1B|p.S1265Y|1|0.29|ENSG00000168702|chr2:140886308-140886308|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2806396484375	2	545.805834	1089.59712	-1.0427	-0.00056909	-2.6526	-0.0014478	-3.6953	-0.0020169	545.8043084947906	40.089	0.65023	39.859	39.546	40.197	-0.23021					47	16	4	0	0	0	0.027866	1	3475	3475		28.254	0	1	1171900			25422	17924	17525	17563	29333	29333					0.055900395768503586
IIFYVSLF	8	Unmodified	_IIFYVSLF_					0	0	0			REV__nc|ENSG00000143771|Q9P003-2|CNIH4	REV__nc|ENSG00000143771|Q9P003-2|CNIH4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.28997802734375	2	501.288954	1000.56336	0.79978	0.00040092	1.6084	0.00080626	2.4082	0.0012072	501.2895758919925	98.248	1.3141	98.112	97.739	99.053	-0.13625					61	31	3	0	0	0	0.95417	1	12177	12177		44.531	2.0566	1	1546600	+		25423	24279	17526	17564	29334	29334					0.06309618085083457
IIGESIIIS	9	Unmodified	_IIGESIIIS_					0	0	0			REV__ENST00000533428.2_1_15:97300531-97301611:+|nuORF	REV__ENST00000533428.2_1_15:97300531-97301611:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.7870178222656	2	472.786776	943.558998	0.0066512	3.1446E-06	0.6551	0.00030972	0.66175	0.00031287	472.78671900748265	83.513	1.2846	83.374	83.037	84.322	-0.1386					54	29	4	0	0	0	0.31247	1	10064	10064		73.975	0	1	1332600	+		25424	34604	17527	17565	29335	29335					0.08496108871543129
IIGGIDHSLY	10	Unmodified	_IIGGIDHSLY_					0	0	0		nc|ENSG00000186318|P56817-4|BACE1;nc|ENSG00000186318|P56817-3|BACE1;nc|ENSG00000186318|P56817-2|BACE1;ENSG00000186318|ENST00000313005|BACE1;nc|ENSG00000186318|P56817-6|BACE1;nc|ENSG00000186318|P56817-5|BACE1	nc|ENSG00000186318|P56817-4|BACE1	nc|ENSG00000186318|P56817-4|BACE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3466186523438	2	544.292756	1086.57096	-0.6207	-0.00033784	3.9866	0.0021699	3.3659	0.001832	544.2949255649987	78.11	0.94019	77.955	77.617	78.557	-0.15591					38	21	3	0	0	0	0.03519	1	9355	9355		47.916	10.756	1	398080			25425	9539	17528	17566	29336	29336					0.031137256147076187
IIGIIHSVIQ	10	Unmodified	_IIGIIHSVIQ_					0	0	0		OR4F6|p.W149R|1|0.06|ENSG00000184140|chr15:101806164-101806164|T/C|missense_variant;ENSG00000184140|ENST00000328882|OR4F6	OR4F6|p.W149R|1|0.06|ENSG00000184140|chr15:101806164-101806164|T/C|missense_variant	OR4F6|p.W149R|1|0.06|ENSG00000184140|chr15:101806164-101806164|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8408813476562	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	1.1267	1	12778	12778		29.15	1.2673	1	11254000			25426	9308	17529	17567	29337	29337					0.12811168299458586
IIGILACQL	9	Unmodified	_IIGILACQL_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2878723144531	2	472.285889	942.557224	-0.48925	-0.00023107	4.0657	0.0019202	3.5765	0.0016891	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	0.60698	1	11577	11577		52.299	9.8247	1	45907000			25427	18258	17530	17568	29338	29338					0.08364776581913702
IIGIPTCVK	9	Unmodified	_IIGIPTCVK_					0	0	0		nc|ENSG00000178460|Q4G0Z9-2|MCMDC2;nc|ENSG00000178460|Q4G0Z9-4|MCMDC2;ENST00000428734.5_1_8:67786448-67831401:+|nuORF;ENSG00000178460|ENST00000422365|MCMDC2;nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2882995605469	2	472.285889	942.557224	0.59468	0.00028086	2.9557	0.0013959	3.5504	0.0016768	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	0.70186	1	12064	12064		45.952	1.8352	1	51888000			25428	8814	17531	17569	29339	29339					0.08364776581913702
IIGKKGTRI	9	Unmodified	_IIGKKGTRI_					0	0	0		MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant;ENST00000492336.5_1_21:37692562-37711220:+|nuORF;ENSG00000159256|ENST00000400485|MORC3	MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant;ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3056640625	2	493.329476	984.6444	0.51981	0.00025644	3.0627	0.0015109	3.5825	0.0017674	493.3307932521725	69.55	0.18448	69.257	69.202	69.386	-0.29291					7	4	2	0	0	0	0.024541	1	8357	8357		20.947	0	1	178190			25429	17990;6732	17532	17570	29340	29340					0.15146318847837392
IIGLIHSLVQ	10	Unmodified	_IIGLIHSLVQ_					0	0	0		ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.8401489257812	2	546.842416	1091.67028	-0.3389	-0.00018533	-3.9718	-0.002172	-4.3107	-0.0023573	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	0.96965	1	12416	12416		49.442	1.7842	1	9530200			25430	9169	17533	17571	29341	29341					0.12811168299458586
IIGLIPTVG	9	Unmodified	_IIGLIPTVG_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7879638671875	2	441.786579	881.558604	-0.30922	-0.00013661	3.3597	0.0014843	3.0505	0.0013477	441.78798563803605	43.02	2.2928	43.02	42.786	45.079	0					149	64	5	0	0	0	0.88411	1	4015	4015		33.516	0	1	23586000			25431	9658	17534	17572	29342	29342					0.11308733942325944
IIGLIPTVG	9	Unmodified	_IIGLIPTVG_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7883605957031	2	441.786579	881.558604	-0.34704	-0.00015332	3.3795	0.001493	3.0324	0.0013397	441.78799059467195	43.095	2.3661	42.982	42.775	45.141	-0.11253					131	63	5	0	0	0	0.78069	1	3934	3934		40.573	7.057	1	16234000			25432	9658	17534	17572	29343	29343					0.11308733942325944
IIGLIPTVG	9	Unmodified	_IIGLIPTVG_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.78802490234375	2	441.786579	881.558604	-0.29735	-0.00013137	3.287	0.0014522	2.9897	0.0013208	441.7879427918054	40.843	1.9371	40.615	40.184	42.121	-0.2278					180	51	6	0	0	0	0.75282	1	3627	3627		42.474	1.9018	1	18973000			25433	9658	17534	17572	29344	29344					0.11308733942325944
IIGLVGNLL	9	Unmodified	_IIGLVGNLL_					0	0	0		ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.15582275390625	2	456.299853	910.585153	-0.52606	-0.00024004	2.6291	0.0011997	2.1031	0.00095963	456.3008286927501	39.131	1.0988	38.908	38.755	39.854	-0.22311					59	28	3	0	0	0	0.024497	1	3421	3421		8.2313	0	1	200560			25434	7945	17535	17573	29345	29345					0.1262842283365444
IIGLVRVIPL	10	Unmodified	_IIGLVRVIPL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.8402099609375	2	546.878802	1091.74305	-0.14901	-8.1492E-05	4.1341	0.0022608	3.9851	0.0021793	546.8812202286094	99.642	0.12747	99.642	99.535	99.663	0					4	2	2	0	0	0	0.03519	1	12728	12728		17.365	13.955	1	39085			25435	1801	17536	17574	29346	29346					0.20084922092883062
IIGNFQAF	8	Unmodified	_IIGNFQAF_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2342224121094	2	455.245078	908.475603	0.5422	0.00024684	3.3448	0.0015227	3.887	0.0017695	455.2464374253258	50.768	0.67394	50.657	50.416	51.09	-0.11163					26	17	2	0	0	0	0.027866	1	5204	5204		31.955	11.473	1	334600			25436	1095	17537	17575	29347	29347					0.017704172143339747
IIGRKGII	8	Unmodified	_IIGRKGII_					0	0	0			REV__ENSG00000167283|ENST00000300688|ATP5MG	REV__ENSG00000167283|ENST00000300688|ATP5MG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	435.300188	868.585822	-0.070942	-3.0881E-05	0.2036	8.8625E-05	0.13265	5.7744E-05	435.30010742650774	40.356	0.29386	40.131	39.965	40.259	-0.225					13	7	2	0	0	0	0.027866	1	3478	3478		37.028	0	1	176090	+		25437	26125	17538	17576	29348	29348					0.14627262273381803
IIGSTFLT	8	Unmodified	_IIGSTFLT_					0	0	0		ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2460632324219	2	426.247286	850.48002	0.74858	0.00031908	-3.6265	-0.0015458	-2.8779	-0.0012267	426.24564567303247	84.196	1.2817	84.058	83.506	84.788	-0.13789					59	29	3	0	0	0	1.0133	1	10168	10168		35.201	1.7077	1	709750			25438	10257	17539	17577	29349	29349					0.04879881637236849
IIGSYPAHCD	10	Unmodified	_IIGSYPAHCD_					0	0	0			REV__ENST00000402746.5_1_7:2260573-2272521:-|nuORF	REV__ENST00000402746.5_1_7:2260573-2272521:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2445678710938	2	538.247492	1074.48043	-1.9393	-0.0010438	-2.7081	-0.0014576	-4.6473	-0.0025014	538.2448062933165	55.948	1.03	55.733	55.168	56.198	-0.21551					75	27	5	0	0	0	0.75995	1	6029	6029		63.306	0	1	10404000	+		25439	31876	17540	17578	29350	29350					-0.05383066705235251
IIGSYTLVLK	10	Unmodified	_IIGSYTLVLK_					0	0	0		ENSG00000258453|ENST00000556246|OR11H2;nc|ENSG00000258453|Q8NH07|OR11H2;ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000130538|Q8NG94|OR11H1;ENSG00000257115|ENST00000550708|OR11H12	ENSG00000258453|ENST00000556246|OR11H2	ENSG00000258453|ENST00000556246|OR11H2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7730102539062	2	553.844625	1105.6747	-1.0547	-0.00058416	-1.5028	-0.00083231	-2.5575	-0.0014165	553.843656001762	37.616	0.31452	37.396	37.192	37.506	-0.2195					16	7	3	0	0	0	0.03519	1	2999	2999		23.042	1.0826	1	136150			25440	10928	17541	17579	29351	29351					0.12608632722367474
IIGSYTLVLK	10	Unmodified	_IIGSYTLVLK_					0	0	0		ENSG00000258453|ENST00000556246|OR11H2;nc|ENSG00000258453|Q8NH07|OR11H2;ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000130538|Q8NG94|OR11H1;ENSG00000257115|ENST00000550708|OR11H12	ENSG00000258453|ENST00000556246|OR11H2	ENSG00000258453|ENST00000556246|OR11H2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.7728881835938	2	553.844625	1105.6747	-1.0007	-0.00055423	-1.5237	-0.00084391	-2.5244	-0.0013981	553.8436657297292	37.543	0.39154	37.334	37.153	37.545	-0.2092					16	9	2	0	0	0	0.03519	1	2992	2992		11.511	0.64546	1	167820			25441	10928	17541	17579	29352	29352					0.12608632722367474
IIGWSFVDC	9	Unmodified	_IIGWSFVDC_					0	0	0			REV__nc|ENSG00000135341|O43318-4|MAP3K7	REV__nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.771728515625	2	520.249503	1038.48445	-0.25612	-0.00013325	-3.0576	-0.0015907	-3.3137	-0.0017239	520.2475413841828	72.296	1.5305	72.098	71.585	73.115	-0.19811					68	36	2	0	0	0	0.024466	1	8538	8538		18.324	0.95945	1	238830	+		25442	23533	17542	17580	29353	29353					-0.03324977211514124
IIGWSFVDC	9	Unmodified	_IIGWSFVDC_					0	0	0			REV__nc|ENSG00000135341|O43318-4|MAP3K7	REV__nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.249503	1038.48445	-0.2855	-0.00014853	-2.6679	-0.001388	-2.9534	-0.0015365	520.2477963229782	72.581	1.387	72.304	71.664	73.051	-0.2769	0.039189	0.00029398	NaN	18.324	58	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181010	+		25443	23533	17542	17580							-0.03324977211514124
IIGWSFVDC	9	Unmodified	_IIGWSFVDC_					0	0	0			REV__nc|ENSG00000135341|O43318-4|MAP3K7	REV__nc|ENSG00000135341|O43318-4|MAP3K7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.249503	1038.48445	0.32544	0.00016931	-3.2285	-0.0016796	-2.9031	-0.0015103	520.2474668786084	72.657	1.7001	72.392	71.556	73.256	-0.26479	0.12716	-0.00028933	NaN	18.324	64	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149420	+		25444	23533	17542	17580							-0.03324977211514124
IIHFHLGI	8	Unmodified	_IIHFHLGI_					0	0	0		ENST00000266085.6_1_22:33255513-33255645:+|nuORF	ENST00000266085.6_1_22:33255513-33255645:+|nuORF	ENST00000266085.6_1_22:33255513-33255645:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.2824401855469	2	475.284537	948.554522	-0.3456	-0.00016426	-3.9849	-0.0018939	-4.3305	-0.0020582	475.28242282330825	35.001	0.83228	34.789	34.401	35.233	-0.21246					52	20	4	0	0	0	0.69959	1	2621	2621		67.327	11.823	1	2326800			25445	11606	17543	17581	29354	29354					0.07818689239263676
IIHFHLGI	8	Unmodified	_IIHFHLGI_					0	0	0		ENST00000266085.6_1_22:33255513-33255645:+|nuORF	ENST00000266085.6_1_22:33255513-33255645:+|nuORF	ENST00000266085.6_1_22:33255513-33255645:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2824401855469	2	475.284537	948.554522	-0.49485	-0.0002352	-3.6762	-0.0017472	-4.171	-0.0019824	475.28255981142814	34.925	0.85781	34.738	34.402	35.26	-0.18675					53	21	4	0	0	0	0.8525	1	2610	2610		54.895	0	1	2386300			25446	11606	17543	17581	29355	29355					0.07818689239263676
IIHLLTGENP	10	Unmodified	_IIHLLTGENP_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.2967529296875	2	553.813856	1105.61316	0.058144	3.2201E-05	0.78163	0.00043288	0.83977	0.00046508	554.3158307357309	101.76	0.45895	101.59	101.47	101.93	-0.17178					15	10	2	0	0	0	0.03519	1	12643	12643		47.657	13.485	1	145250			25447	1761	17544	17582	29356	29356					0.06457701023077789
IIHNYGLQL	9	Unmodified	_IIHNYGLQL_					0	0	0		ENSG00000140948|ENST00000671377|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3495483398438	2	535.803291	1069.59203	-0.39203	-0.00021005	3.3228	0.0017804	2.9308	0.0015703	535.8051821955427	87.534	0.9056	87.355	86.903	87.809	-0.17875					32	21	2	0	0	0	0.024381	1	10660	10660		37.159	3.6435	1	57410			25448	5454	17545	17583	29357	29357					0.06001735714221468
IIHPGAML	8	Unmodified	_IIHPGAML_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2463073730469	2	426.244024	850.473494	0.4124	0.00017578	4.4485	0.0018962	4.8609	0.0020719	426.2457939199312	86.761	2.0846	86.782	86.157	88.241	0.021263					140	49	6	0	0	0	1.0574	1	10874	10874		24.504	0.30126	1	10449000			25449	7116	17546	17584	29358	29358					0.04227665204859932
IIHPGAML	8	Unmodified	_IIHPGAML_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2458190917969	2	426.244024	850.473494	0.53404	0.00022763	4.0282	0.001717	4.5623	0.0019446	426.24566550272664	89.556	2.4252	89.419	88.44	90.865	-0.13762					100	57	3	0	0	0	1.0241	1	10924	10924		33.493	6.6969	1	549880			25450	7116	17546	17584	29359	29359					0.04227665204859932
IIHRAILGSV	10	Unmodified	_IIHRAILGSV_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2911987304688	2	539.840208	1077.66586	-0.090747	-4.8989E-05	-0.87694	-0.00047341	-0.96768	-0.00052239	540.3412456261435	56.369	0.19565	56.153	56.078	56.274	-0.21607					6	4	2	0	0	0	0.03519	1	6103	6103		18.262	1.7889	1	60091			25451	9435	17547	17585	29360	29360					0.13013703876572436
IIHRGGFF	8	Unmodified	_IIHRGGFF_					0	0	0		ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2;ENST00000520379.2_1_7:77814916-78119132:-|nuORF	ENSG00000187391|ENST00000354212|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.2333984375	2	473.766512	945.518471	-1.3526	-0.00064081	-3.2569	-0.001543	-4.6094	-0.0021838	473.76473999603513	40.825	0.54626	40.595	40.378	40.925	-0.23029					29	14	3	0	0	0	0.027866	1	3517	3517		21.702	1.2205	1	617950			25452	9623	17548	17586	29361	29361					0.04353232062430834
IIHVFNIPKRF	11	Unmodified	_IIHVFNIPKRF_					0	0	0			REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.9481506347656	3	461.946835	1382.81868	-1.2811	-0.00059179	4.49	0.0020742	3.2089	0.0014824	461.948787177051	107.18	0.59211	107.05	106.76	107.35	-0.1346					79	23	4	0	0	0	1.0739	1	13313	13313		18.531	0.69791	1	1174300	+		25453	31781	17549	17587	29362	29362					0.1425789927313872
IIHVFNIPKRF	11	Unmodified	_IIHVFNIPKRF_					0	0	0			REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.9482116699219	3	461.946835	1382.81868	0.61239	0.00028289	2.6133	0.0012072	3.2257	0.0014901	461.94794392048686	107.2	0.53325	107.04	106.81	107.34	-0.15772					68	20	4	0	0	0	1.0499	1	13303	13303		25.126	4.2888	1	1520300	+		25454	31781	17549	17587	29363	29363					0.1425789927313872
IIHVFNIPKRF	11	Unmodified	_IIHVFNIPKRF_					0	0	0			REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	461.946835	1382.81868	1.001	0.00046239	2.4841	0.0011475	3.4851	0.0016099	461.9478269984547	106.98	0.72267	106.98	106.75	107.47	0	-0.029167	-0.0011135	NaN	25.126	65	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1389800	+		25455	31781	17549	17587							0.1425789927313872
IIHVFNIPKRF	11	Unmodified	_IIHVFNIPKRF_					0	0	0			REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	461.946835	1382.81868	0.1908	8.8141E-05	3.0909	0.0014278	3.2817	0.001516	461.94817902999546	106.95	0.72211	106.95	106.72	107.44	-0.003479	-0.062714	-0.00027255	NaN	25.126	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049600	+		25456	31781	17549	17587							0.1425789927313872
IIHVFNIPKRF	11	Unmodified	_IIHVFNIPKRF_					0	0	0			REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	461.946835	1382.81868	0.55971	0.00025856	2.6793	0.0012377	3.239	0.0014963	461.94797392745267	107.08	0.64004	107.08	106.83	107.47	0.0018311	0.072244	-0.00084292	NaN	25.126	54	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1516100	+		25457	31781	17549	17587							0.1425789927313872
IIHVFNIPKRF	11	Unmodified	_IIHVFNIPKRF_					0	0	0			REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	REV__ENST00000397708.1_1_21:47705189-47706155:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	461.946835	1382.81868	-1.2811	-0.00059179	4.49	0.0020742	3.2089	0.0014824	461.948787177051	107.18	0.59211	107.05	106.76	107.35	-0.1346	0.034495	0.0016664	NaN	25.126	79	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1174300	+		25458	31781	17549	17587							0.1425789927313872
IIICLTKR	8	Unmodified	_IIICLTKR_					0	0	0			REV__ENSG00000079950|ENST00000367941|STX7	REV__ENSG00000079950|ENST00000367941|STX7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.77740478515625	2	480.307155	958.599758	-0.52722	-0.00025323	-2.4266	-0.0011655	-2.9538	-0.0014187	480.3056604042996	56.114	0.53642	55.898	55.78	56.317	-0.21551					23	13	3	0	0	0	0.027866	1	6105	6105		60.972	15.02	1	395030	+		25459	20646	17550	17588	29364	29364					0.1188017171014053
IIIDHFLF	8	Unmodified	_IIIDHFLF_					0	0	0			REV__ENST00000238831.8_1_2:32517356-32517413:+|nuORF	REV__ENST00000238831.8_1_2:32517356-32517413:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.763671875	2	509.292028	1016.5695	-0.21809	-0.00011107	-0.74772	-0.00038081	-0.96581	-0.00049188	509.79329639635483	49.139	0.34462	48.957	48.845	49.19	-0.18206					15	8	3	0	0	0	0.027866	1	4947	4947		29.842	1.5873	1	88860	+		25460	29443	17551	17589	29365	29365					0.06188136316609416
IIIDIYLPV	9	Unmodified	_IIIDIYLPV_					0	0	0		nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.814208984375	2	529.828443	1057.64233	-0.86002	-0.00045566	-1.4772	-0.00078266	-2.3372	-0.0012383	529.8274700504892	26.782	0.20848	26.863	26.714	26.923	0.081293					5	4	2	0	0	0	0.024535	1	1336	1336		12.207	1.3413	1	54798			25461	7265	17552	17590	29366	29366					0.11581845319369677
IIIEIAKEL	9	Unmodified	_IIIEIAKEL_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3131103515625	2	521.33135	1040.64815	0.17508	9.1277E-05	4.1426	0.0021597	4.3177	0.002251	521.3343414466842	91.396	0.20869	91.407	91.278	91.487	0.011276					7	4	2	0	0	0	0.014251	1	11494	11494		157.21	0	1	25135	+		25462	22391	17553	17591	29367	29367					0.12944943831030287
IIIFVHFILK	10	Unmodified	_IIIFVHFILK_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.9010620117188	2	621.902277	1241.79	-0.47748	-0.00029695	-1.8262	-0.0011357	-2.3037	-0.0014327	621.9008995623008	105.33	0.39741	105.32	105.12	105.52	-0.0015945					28	11	3	0	0	0	1.1237	1	13451	13451		23.042	1.0826	1	1660400	+		25463	36970	17554	17592	29368	29368					0.178777816440288
IIIGGDRR	8	Unmodified	_IIIGGDRR_					0	0	0			REV__ENSG00000188467|ENST00000341459|SLC24A5	REV__ENSG00000188467|ENST00000341459|SLC24A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.274658203125	2	450.274701	898.534849	-0.17068	-7.6855E-05	-0.93719	-0.00042199	-1.1079	-0.00049885	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	1.0133	1	11697	11697		35.201	4.6971	1	67707000	+		25464	28038	17555	17593	29369	29369					0.08152313228515595
IIIHFLESTF	10	Unmodified	_IIIHFLESTF_					0	0	0			REV__ENSG00000150048|ENST00000315330|CLEC1A	REV__ENSG00000150048|ENST00000315330|CLEC1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.2322998046875	3	407.228897	1218.66486	1.589	0.0006471	4.066	0.0016558	5.6551	0.0023029	407.2305444554242	43.461	0.91105	43.492	43.191	44.102	0.030823					75	24	5	0	0	0	0.88896	1	4004	4004		54.776	8.3195	1	6812000	+		25465	24709	17556	17594	29370	29370					0.06427444716996433
IIIHLEKRSL	10	Unmodified	_IIIHLEKRSL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	611.3563232421875	2	611.387522	1220.76049	-0.44941	-0.00027476	3.0864	0.001887	2.637	0.0016122	611.3889543877248	94.538	0.20992	94.39	94.288	94.498	-0.14771					10	4	3	0	0	0	0.03519	1	11647	11647		12.812	0	1	42349			25466	4619	17557	17595	29371	29371					0.15894217627896978
IIIHSLKKCDI	11	Unmodified	_IIIHSLKKCDI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8826904296875	2	641.881216	1281.74788	-2.5036	-0.001607	4.256	0.0027318	1.7524	0.0011248	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.0344	1	11705	11705		29.17	2.4771	1	1400600			25467	1655	17558	17596	29372	29372					0.11827438173372684
IIIHSLKKCDI	11	Unmodified	_IIIHSLKKCDI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.T283Nfs*17|1|0.29|ENSG00000079246|chr2:216127579-216127580|-/A|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.882568359375	2	641.881216	1281.74788	-0.70618	-0.00045328	2.528	0.0016227	1.8218	0.0011694	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0344	1	12036	12036		29.17	4.6509	1	3453200			25468	1655	17558	17596	29373	29373					0.11827438173372684
IIIHVLPTE	9	Unmodified	_IIIHVLPTE_					0	0	0			REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7996826171875	2	517.815867	1033.61718	-0.31704	-0.00016417	-0.39567	-0.00020488	-0.71271	-0.00036905	517.8151860441932	104.69	0.46219	104.69	104.51	104.98	-0.0015945					20	13	2	0	0	0	0.024517	1	13370	13370		26.796	0	1	60999	+		25469	20466	17559	17597	29374	29374					0.10171790516801593
IIIIGFLRCY	10	Unmodified	_IIIIGFLRCY_					0	0	0		ENSG00000255524|ENST00000683297|NPIPB8	ENSG00000255524|ENST00000683297|NPIPB8	ENSG00000255524|ENST00000683297|NPIPB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.855712890625	2	605.85447	1209.69439	-0.22702	-0.00013754	2.1003	0.0012725	1.8732	0.0011349	605.8555419942754	82.066	1.3776	81.837	81.395	82.773	-0.2289					85	29	5	0	0	0	0.91051	1	9885	9885		53.351	1.8237	1	2615800			25470	10893	17560	17598	29375	29375					0.09792685461479778
IIIIPEKQV	9	Unmodified	_IIIIPEKQV_					0	0	0		nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX;nc|ENSG00000147231|Q6NSI4-2|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3143920898438	2	526.839342	1051.66413	-1.0051	-0.00052951	-2.2855	-0.0012041	-3.2906	-0.0017336	527.3405937588893	75.005	0.20217	75.005	74.914	75.116	0					7	4	2	0	0	0	0.024506	1	9186	9186		23.042	6.5693	1	49422			25471	5948	17561	17599	29376	29376					0.14036650067941991
IIIIPEKQV	9	Unmodified	_IIIIPEKQV_					0	0	0		nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX;nc|ENSG00000147231|Q6NSI4-2|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.839342	1051.66413	-0.10172	-5.3592E-05	-0.74443	-0.0003922	-0.84616	-0.00044579	526.8383629347845	75.269	0.25284	74.997	74.807	75.06	-0.27266	-0.014611	8.8541E-05	NaN	23.042	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39634			25472	5948	17561	17599							0.14036650067941991
IIILLIKIH	9	Unmodified	_IIILLIKIH_					0	0	0		nc|ENSG00000174970|Q8NH19|OR10AG1;ENSG00000174970|ENST00000641071|OR10AG1	nc|ENSG00000174970|Q8NH19|OR10AG1	nc|ENSG00000174970|Q8NH19|OR10AG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.3273315429688	2	538.38372	1074.75289	-0.44334	-0.00023869	3.5334	0.0019023	3.0901	0.0016637	538.384473633864	99.545	0.17152	99.555	99.446	99.617	0.010231					5	3	2	0	0	0	0.024541	1	12693	12693		8.2313	3.915	1	44598			25473	8516	17562	17600	29377	29377					0.2185011009826212
IIILLIKIH	9	Unmodified	_IIILLIKIH_					0	0	0		nc|ENSG00000174970|Q8NH19|OR10AG1;ENSG00000174970|ENST00000641071|OR10AG1	nc|ENSG00000174970|Q8NH19|OR10AG1	nc|ENSG00000174970|Q8NH19|OR10AG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.38372	1074.75289	0.31282	0.00016842	6.1478	0.0033099	6.4607	0.0034783	538.3870615383853	99.791	0.16303	99.656	99.514	99.677	-0.13526	0.050398	0.0025371	NaN	8.2313	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41884			25474	8516	17562	17600							0.2185011009826212
IIILSCCCV	9	Carbamidomethyl (C)	_IIILSC(Carbamidomethyl (C))CCV_	IIILSC(0.995)C(0.003)C(0.003)V		IIILSC(26)C(-26)C(-26)V		0	1	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2535400390625	2	512.255417	1022.49628	-0.65531	-0.00033569	-4.2337	-0.0021687	-4.889	-0.0025044	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.52323	1	5819	5819		57.811	9.8957	3	53582000			25475	7535	17563	17601	29378	29378	89				-0.014068197841879737
IIIRALLSP	9	Unmodified	_IIIRALLSP_					0	0	0			REV__ENST00000552818.1_1_12:48535711-48536092:+|nuORF	REV__ENST00000552818.1_1_12:48535711-48536092:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3345642089844	2	498.334227	994.653902	-0.48227	-0.00024033	0.22588	0.00011256	-0.25639	-0.00012777	498.33429074647324	74.367	0.55562	74.376	74.051	74.607	0.0096512					47	12	4	0	0	0	0.33245	1	9036	9036		71.296	2.5089	1	5411700	+		25476	34960	17564	17602	29379	29379					0.15636087133384535
IIIRIPVTPKP	11	Unmodified	_IIIRIPVTPKP_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.4190673828125	2	623.915916	1245.81728	0.19385	0.00012095	0.28187	0.00017586	0.47572	0.00029681	623.9161336317403	107.69	0.25077	107.56	107.41	107.66	-0.1238					18	12	2	0	0	0	1.1039	1	13383	13383		10.265	0.5596	1	1282300	+		25477	24990	17565	17603	29380	29380					0.20420265184407072
IIIRPMYI	8	Unmodified	_IIIRPMYI_					0	0	0			REV__ENST00000395526.8_1_10:51946049-51946148:-|nuORF	REV__ENST00000395526.8_1_10:51946049-51946148:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.76373291015625	2	509.809531	1017.60451	-0.76076	-0.00038784	-1.3399	-0.00068312	-2.1007	-0.001071	509.8086380915803	48.997	0.52873	48.896	48.618	49.147	-0.1008					27	13	3	0	0	0	0.027866	1	4884	4884		46.766	9.738	1	454890	+		25478	31705	17566	17604	29381	29381					0.09641055852910085
IIIVLLATV	9	Unmodified	_IIIVLLATV_					0	0	0			REV__ENSG00000171045|ENST00000524325|TSNARE1	REV__ENSG00000171045|ENST00000524325|TSNARE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7777404785156	2	477.833529	953.652505	-0.069037	-3.2988E-05	2.7973	0.0013367	2.7283	0.0013037	477.83340995478096	27.252	0.17645	27.239	27.101	27.277	-0.012983					5	4	2	0	0	0	0.024541	1	1453	1453		12.959	0	1	28271	+		25479	26533	17567	17605	29382	29382					0.1738245304461543
IIIVVVLIK	9	Unmodified	_IIIVVVLIK_					0	0	0		nc|ENSG00000137648|Q9NRS4-2|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.35455322265625	2	505.372821	1008.73109	-0.7908	-0.00039965	-0.083941	-4.2422E-05	-0.87474	-0.00044207	505.37226120824334	90.506	0.20853	90.381	90.208	90.416	-0.12512					7	4	2	0	0	0	0.024541	1	11069	11069		14.664	5.8418	1	36221			25480	5143	17568	17606	29383	29383					0.2270730534970653
IIIWHCDF	8	Unmodified	_IIIWHCDF_					0	0	0			REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3029174804688	2	523.760038	1045.50552	-0.11599	-6.075E-05	0.24126	0.00012636	0.12527	6.561E-05	523.7597845720642	19.861	0.34368	19.7	19.48	19.823	-0.16079					10	6	2	0	0	0	0.027866	1	487	487		28.254	2.8041	1	51568	+		25481	24821	17569	17607	29384	29384					-0.015409671119869017
IIKAKANLE	9	Unmodified	_IIKAKANLE_					0	0	0		ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7867431640625	2	500.313492	998.612431	0.11363	5.6848E-05	-2.7753	-0.0013885	-2.6616	-0.0013317	500.31322755146925	54.94	0.22021	54.94	54.794	55.014	0					6	5	2	0	0	0	0.024205	1	6027	6027		73.975	41.162	1	45692			25482	10024;1976	17570	17608	29385	29385					0.11306906374022674
IIKDKHIL	8	Unmodified	_IIKDKHIL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.31829833984375	2	490.318577	978.622602	-1.1952	-0.00058602	0.78683	0.0003858	-0.40836	-0.00020023	490.31890897050926	29.541	1.2331	29.296	29.011	30.244	-0.24524					81	28	4	0	0	0	0.24001	4	1816	1807;1816;1828;1842		133.81	22.164	1	3774700			25483	1686;4257	17571	17609	29386;29387;29388;29389	29387					0.13243514099281128
IIKDKHIL	8	Unmodified	_IIKDKHIL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.318603515625	2	490.318577	978.622602	-0.51953	-0.00025473	0.064968	3.1855E-05	-0.45456	-0.00022288	490.31854265358834	29.478	1.2633	29.305	29.025	30.289	-0.17258					77	29	4	0	0	0	0.32162	4	1803	1792;1803;1816;1831		108.09	25.782	1	3801500			25484	1686;4257	17571	17609	29390;29391;29392;29393	29391					0.13243514099281128
IIKDKHIL	8	Unmodified	_IIKDKHIL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.31854248046875	2	490.318577	978.622602	0.058532	2.87E-05	-0.52975	-0.00025974	-0.47121	-0.00023105	490.31825155316744	29.52	1.4274	29.37	29.044	30.471	-0.14952					88	33	4	0	0	0	0.32162	3	1779	1779;1791;1803		108.09	17.311	1	3700600			25485	1686;4257	17571	17609	29394;29395;29396	29394					0.13243514099281128
IIKDNSLVL	9	Unmodified	_IIKDNSLVL_					0	0	0		ENSG00000134058|ENST00000256443|CDK7	ENSG00000134058|ENST00000256443|CDK7	ENSG00000134058|ENST00000256443|CDK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7680969238281	2	507.813325	1013.6121	0.1425	7.2365E-05	-0.64248	-0.00032626	-0.49998	-0.0002539	507.8127675981461	59.339	0.66362	59.425	59.134	59.798	0.085682					42	17	3	0	0	0	0.023817	1	6650	6650		51.335	3.6781	1	1650200			25486	4749	17572	17610	29397	29397					0.10583486654184071
IIKEHFEV	8	Unmodified	_IIKEHFEV_					0	0	0		ENST00000522804.5_1_8:87497076-87500839:-|nuORF	ENST00000522804.5_1_8:87497076-87500839:-|nuORF	ENST00000522804.5_1_8:87497076-87500839:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.78466796875	2	507.784567	1013.55458	0.23321	0.00011842	-0.47251	-0.00023994	-0.23931	-0.00012152	507.78429752818664	73.015	1.1431	72.734	72.385	73.528	-0.28124					68	28	4	0	0	0	0.59392	1	8882	8882		76.847	8.0598	1	5691900			25487	16035	17573	17611	29398	29398					0.04834644448612835
IIKEQQKK	8	Unmodified	_IIKEQQKK_					0	0	0			REV__ENSG00000162620|ENST00000354431|LRRIQ3	REV__ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.818603515625	2	507.818941	1013.62333	1.0483	0.00053234	-1.3935	-0.00070766	-0.34524	-0.00017532	507.81808573523904	23.019	0.50624	22.827	22.617	23.124	-0.19117					24	10	4	0	0	0	0.71833	1	844	844		65.803	1.5959	1	424400	+		25488	25465	17574	17612	29399	29399					0.1170630874833023
IIKFAKPL	8	Unmodified	_IIKFAKPL_					0	0	0			REV__ENSG00000112578|ENST00000230340|BYSL	REV__ENSG00000112578|ENST00000230340|BYSL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2869567871094	2	465.312764	928.610974	-1.3947	-0.00064896	2.3983	0.001116	1.0036	0.000467	465.3141824595927	75.288	0.25336	75.288	75.194	75.447	0					13	6	3	0	0	0	0.027866	1	9262	9262		20.482	5.8177	1	480470	+		25489	22014	17575	17613	29400	29400					0.1438131707593584
IIKFSLQKP	9	Unmodified	_IIKFSLQKP_					0	0	0			REV__nc|ENSG00000198586|Q9UKI8-4|TLK1	REV__nc|ENSG00000198586|Q9UKI8-4|TLK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2888793945312	2	537.33951	1072.66447	-0.96738	-0.00051981	1.2432	0.00066799	0.27577	0.00014818	537.3399869197265	89.484	0.67923	89.321	89.052	89.731	-0.1626					33	15	3	0	0	0	0.024405	1	10966	10966		44.117	19.914	1	231560	+		25490	28436	17576	17614	29401	29401					0.1310406978782339
IIKFSSYST	9	Unmodified	_IIKFSSYST_					0	0	0			REV__nc|ENSG00000139505|Q9Y217-2|MTMR6	REV__nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3347778320312	2	523.281857	1044.54916	-0.62711	-0.00032816	-2.3047	-0.001206	-2.9318	-0.0015341	523.2802960980279	27.217	0.37625	26.975	26.786	27.163	-0.24217					10	8	2	0	0	0	0.024374	1	1495	1495		32.812	4.5581	1	73752	+		25491	36713	17577	17615	29402	29402					0.028669208661540324
IIKGNEGK	8	Unmodified	_IIKGNEGK_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.73773193359375	2	429.75581	857.497067	-1.1664	-0.00050129	3.9479	0.0016966	2.7814	0.0011953	429.7587711627167	24.807	0.44782	24.76	24.487	24.935	-0.047148					12	9	2	0	0	0	0.027866	1	1099	1099		31.955	0	1	20560	+		25492	24143	17578	17616	29403	29403					0.06261802243045622
IIKGSYLN	8	Unmodified	_IIKGSYLN_					0	0	0			REV__ENSG00000115977|ENST00000409085|AAK1	REV__ENSG00000115977|ENST00000409085|AAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2369689941406	2	454.26601	906.517468	-0.81589	-0.00037063	4.2056	0.0019105	3.3897	0.0015398	454.26845038028966	43.637	0.77457	43.4	43.136	43.911	-0.23737					32	20	3	0	0	0	0.027866	1	4003	4003		21.96	1.4781	1	442090	+		25493	22246	17579	17617	29404	29404					0.06046972902845482
IIKGVGTSD	9	Unmodified	_IIKGVGTSD_					0	0	0			REV__ALDH3A1|p.G188D|1|0.35|ENSG00000108602|chr17:19742130-19742130|C/T|missense_variant	REV__ALDH3A1|p.G188D|1|0.35|ENSG00000108602|chr17:19742130-19742130|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2686767578125	2	445.2531	888.491647	-0.49274	-0.0002194	0.097926	4.3602E-05	-0.39482	-0.00017579	445.25354512937764	28.875	0.64971	28.706	28.424	29.073	-0.16897					24	14	2	0	0	0	0.024205	1	1703	1703		73.975	35.169	1	892310	+		25494	19103	17580	17618	29405	29405					0.04294078660575451
IIKGVGTSD	9	Unmodified	_IIKGVGTSD_					0	0	0			REV__ALDH3A1|p.G188D|1|0.35|ENSG00000108602|chr17:19742130-19742130|C/T|missense_variant	REV__ALDH3A1|p.G188D|1|0.35|ENSG00000108602|chr17:19742130-19742130|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	445.2531	888.491647	-0.25723	-0.00011453	1.6936	0.00075406	1.4363	0.00063953	445.25379785467226	28.177	0.65742	28.258	27.795	28.452	0.080811	-0.21202	-0.00058893	NaN	73.975	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529740	+		25495	19103	17580	17618							0.04294078660575451
IIKHGTIN	8	Unmodified	_IIKHGTIN_					0	0	0			REV__ENST00000600110.1_1_19:23779328-23779892:+|nuORF	REV__ENST00000600110.1_1_19:23779328-23779892:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.2586975097656	2	448.271627	894.528701	-0.17629	-7.9028E-05	-2.8747	-0.0012886	-3.051	-0.0013677	448.2703621514501	89.145	0.25032	89.017	88.829	89.079	-0.12774					6	5	2	0	0	0	0.027866	1	10878	10878		37.159	18.835	1	59715	+		25496	35839	17581	17619	29406	29406					0.07721794996996323
IIKHPHKVHVY	11	Unmodified	_IIKHPHKVHVY_					0	0	0			REV__CCNL1|p.C195Y|1|0.33|ENSG00000163660|chr3:157153061-157153061|C/T|missense_variant	REV__CCNL1|p.C195Y|1|0.33|ENSG00000163660|chr3:157153061-157153061|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.6081237792969	3	457.606701	1369.79827	0.77892	0.00035644	2.0857	0.00095444	2.8646	0.0013109	457.6077655587918	98.898	1.8258	98.761	97.927	99.752	-0.13625					121	44	3	0	0	0	1.09	1	12260	12260		14.086	0	1	383140	+		25497	19263	17582	17620	29407	29407					0.12816728613370287
IIKHRGKPL	9	Unmodified	_IIKHRGKPL_					0	0	0			REV__ENSG00000049541|ENST00000055077|RFC2	REV__ENSG00000049541|ENST00000055077|RFC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3078002929688	2	531.350743	1060.68693	0.27556	0.00014642	-4.3496	-0.0023112	-4.074	-0.0021647	531.3484847438125	58.637	0.29183	58.728	58.598	58.89	0.091217					11	7	2	0	0	0	0.024466	1	6591	6591		33.516	21.309	1	126290	+		25498	20147	17583	17621	29408	29408					0.15901713976086285
IIKHTTLTY	9	Unmodified	_IIKHTTLTY_					0	0	0			REV__ENSG00000256229|ENST00000335117|ZNF486	REV__ENSG00000256229|ENST00000335117|ZNF486	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.31640625	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	0.96322	1	10497	10497		27.882	1.1893	1	4888900	+		25499	29077	17584	17622	29409	29409					0.08222889028479585
IIKKMSFVL	9	Unmodified	_IIKKMSFVL_					0	0	0		ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.818359375	2	539.838288	1077.66202	-0.20422	-0.00011025	-4.3336	-0.0023395	-4.5379	-0.0024497	539.8342348128389	74.663	0.41748	74.387	74.22	74.638	-0.27573					18	9	3	0	0	0	0.024412	1	8833	8833		31.955	14.59	1	308920			25500	15693	17585	17623	29410	29410					0.1262989805848065
IIKKMSFVL	9	Unmodified	_IIKKMSFVL_					0	0	0		ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.838288	1077.66202	0.83913	0.000453	-8.282	-0.0044709	-7.4428	-0.0040179	539.8333899250669	74.602	0.37669	74.602	74.34	74.717	0	0.079303	-0.0023195	NaN	19.997	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82013			25501	15693	17585	17623							0.1262989805848065
IIKKMSFVL	9	Unmodified	_IIKKMSFVL_					0	0	0		ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.838288	1077.66202	-0.24016	-0.00012965	-7.0217	-0.0037906	-7.2619	-0.0039202	539.8341579908796	74.815	0.3752	74.556	74.327	74.702	-0.25887	0.032614	-0.00095883	NaN	19.997	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123620			25502	15693	17585	17623							0.1262989805848065
IIKKMSFVL	9	Unmodified	_IIKKMSFVL_					0	0	0		ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	ENST00000503602.6_1_12:1085932-1086073:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.838288	1077.66202	-1.163	-0.00062784	-6.6036	-0.0035649	-7.7666	-0.0041927	539.8347577969947	74.635	0.33479	74.645	74.397	74.731	0.0096512	0.12173	-0.00050738	NaN	19.997	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53928			25503	15693	17585	17623							0.1262989805848065
IIKLLPFLKK	10	Unmodified	_IIKLLPFLKK_					0	0	0		nc|ENSG00000105792|A5D8W1-4|CFAP69	nc|ENSG00000105792|A5D8W1-4|CFAP69	nc|ENSG00000105792|A5D8W1-4|CFAP69	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.923095703125	3	404.952927	1211.83695	-0.23915	-9.6845E-05	-1.2725	-0.0005153	-1.5116	-0.00061214	404.9529265090611	26.545	0.21569	26.309	26.162	26.378	-0.23603					11	5	3	0	0	0	0.03519	1	1385	1385		7.0187	0	1	93805			25504	18149	17586	17624	29411	29411					0.23950641195142452
IIKLYQLAN	9	Unmodified	_IIKLYQLAN_					0	0	0			REV__ENSG00000180228|ENST00000325748|PRKRA	REV__ENSG00000180228|ENST00000325748|PRKRA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.326416015625	2	538.329142	1074.64373	0.30756	0.00016557	-4.081	-0.0021969	-3.7735	-0.0020314	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.97516	1	12317	12317		25.45	1.2474	1	21168000	+		25505	27320	17587	17625	29412	29412					0.10939479408125408
IIKPKGVG	8	Unmodified	_IIKPKGVG_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.2486877441406	2	406.273638	810.532724	0.96138	0.00039058	1.0787	0.00043827	2.0401	0.00082885	406.2754822858126	87.774	0.46898	87.738	87.532	88.001	-0.035355					21	11	3	0	0	0	0.027866	1	10989	10989		9.4706	0	1	472930	+		25506	22290	17588	17626	29413	29413					0.11987884490713441
IIKQKMLILLW	11	Unmodified	_IIKQKMLILLW_					0	0	0			REV__ENST00000356929.3_1_19:21475855-21476059:-|nuORF	REV__ENST00000356929.3_1_19:21475855-21476059:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.9427185058594	3	466.96836	1397.88325	0.51208	0.00023912	1.5735	0.00073478	2.0856	0.0009739	467.3026664866626	98.188	0.54145	98.198	97.856	98.397	0.010239					12	12	2	0	0	0	0.024828	1	12456	12456		13.508	7.1871	1	52768	+		25507	30807	17589	17627	29414	29414					0.2002233803495983
IIKQVEPTL	9	Unmodified	_IIKQVEPTL_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7794189453125	2	520.82115	1039.62775	0.01984	1.0333E-05	-0.98014	-0.00051048	-0.9603	-0.00050014	520.8203274949406	62.943	0.38044	62.684	62.579	62.96	-0.25824					11	9	2	0	0	0	0.02435	1	7091	7091		34.173	0	1	213380	+		25508	25882	17590	17628	29415	29415					0.10951773171245804
IIKTEGPTL	9	Unmodified	_IIKTEGPTL_					0	0	0		nc|ENSG00000133110|Q15063-8|POSTN;ENSG00000133110|ENST00000379747|POSTN	nc|ENSG00000133110|Q15063-8|POSTN	nc|ENSG00000133110|Q15063-8|POSTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.256103515625	2	486.292225	970.569897	-0.89719	-0.0004363	-0.29061	-0.00014132	-1.1878	-0.00057762	486.2911916928363	53.438	0.5437	53.291	53.096	53.639	-0.14724					21	14	2	0	0	0	0.02435	1	5728	5728		51.335	7.2187	1	137350		+	25509	4684	17591	17629	29416	29416					0.08343511245811897
IIKTKKRI	8	Unmodified	_IIKTKKRI_					0	0	0			REV__ENSG00000165813|ENST00000369287|CCDC186	REV__ENSG00000165813|ENST00000369287|CCDC186	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2774353027344	2	500.355494	998.696435	0.21409	0.00010712	-4.1241	-0.0020635	-3.91	-0.0019564	500.3540570277539	61.13	0.29567	61.13	60.921	61.216	0					9	7	2	0	0	0	0.027866	1	7039	7039		25.45	4.9683	1	70091	+		25510	25933	17592	17630	29417	29417					0.19703482261604677
IIKVTECF	8	Unmodified	_IIKVTECF_					0	0	0			REV__ENSG00000121207|ENST00000336356|LRAT	REV__ENSG00000121207|ENST00000336356|LRAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2773132324219	2	476.762246	951.50994	1.5354	0.00073202	-4.2556	-0.0020289	-2.7202	-0.0012969	476.760076095078	19.499	0.44622	19.266	18.978	19.424	-0.23345					12	8	2	0	0	0	0.027866	1	378	378		28.254	0	1	38052	+		25511	22584	17593	17631	29418	29418					0.0322449731091865
IIKYIILFFWF	11	Unmodified	_IIKYIILFFWF_					0	0	0			REV__ENST00000531909.5_1_11:124967059-124967155:-|nuORF	REV__ENST00000531909.5_1_11:124967059-124967155:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2941589355469	3	501.631853	1501.87373	0.43864	0.00022004	4.445	0.0022297	4.8836	0.0024498	501.6340121582722	102.26	1.6478	102.13	101.18	102.82	-0.1293					64	38	2	0	0	0	0.024884	1	12685	12685		3.6191	3.2786	1	200170	+		25512	34567	17594	17632	29419	29419					0.14286893021085234
IIKYNLQKRTV	11	Unmodified	_IIKYNLQKRTV_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2881164550781	3	459.285516	1374.83472	-0.012656	-5.8129E-06	4.2992	0.0019746	4.2866	0.0019688	459.28715408698037	52.552	0.7263	52.362	52.067	52.793	-0.18982					34	17	3	0	0	0	1.0532	1	5461	5461		24.232	0.85391	1	551510			25513	9278	17595	17633	29420	29420					0.1622956071939825
IIKYNLQKRTV	11	Unmodified	_IIKYNLQKRTV_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	459.285516	1374.83472	-0.14895	-6.841E-05	3.9881	0.0018317	3.8391	0.0017633	459.28724258725424	52.686	0.43968	52.559	52.353	52.792	-0.12706	0.070992	0.00012806	NaN	24.232	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229320			25514	9278	17595	17633							0.1622956071939825
IIKYNLQKRTV	11	Unmodified	_IIKYNLQKRTV_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	459.285516	1374.83472	0.21784	0.00010005	3.539	0.0016254	3.7569	0.0017255	459.2869441457204	52.801	0.70947	52.543	52.173	52.882	-0.25838	0.054943	-0.00049066	NaN	24.232	34	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424130			25515	9278	17595	17633							0.1622956071939825
IILAIGNSI	9	Unmodified	_IILAIGNSI_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2640075683594	2	457.289485	912.564418	0.10052	4.5965E-05	-0.013015	-5.9515E-06	0.087502	4.0014E-05	457.28930121827597	82.332	0.33637	82.332	82.113	82.449	0					9	7	2	0	0	0	0.024323	1	10263	10263		35.618	11.416	1	45531			25516	2538	17596	17634	29421	29421					0.10463832454001931
IILALQAS	8	Unmodified	_IILALQAS_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7616271972656	2	414.763104	827.511654	-0.33499	-0.00013894	-3.3986	-0.0014096	-3.7336	-0.0015486	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	1.0239	1	10730	10730		33.516	0	1	36536000	+		25517	26616	17597	17635	29422	29422					0.09099874391176854
IILALQAS	8	Unmodified	_IILALQAS_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.7618103027344	2	414.763104	827.511654	0.29023	0.00012038	-4.0537	-0.0016813	-3.7634	-0.0015609	414.7613841509049	87.889	2.3301	87.752	87.289	89.619	-0.13744					147	55	6	0	0	0	1.0572	1	10711	10711		28.254	0	1	22642000	+		25518	26616	17597	17635	29423	29423					0.09099874391176854
IILAVLDWF	9	Unmodified	_IILAVLDWF_					0	0	0			REV__ENST00000557320.5_1_14:96999700-97000015:+|nuORF	REV__ENST00000557320.5_1_14:96999700-97000015:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2760620117188	2	545.320786	1088.62702	-0.26395	-0.00014394	-1.946	-0.0010612	-2.2099	-0.0012051	545.3204698164116	78.556	0.87019	78.364	78.096	78.966	-0.1921					57	20	4	0	0	0	0.024418	1	9690	9690		37.028	0	1	331070	+		25519	35065	17598	17636	29424	29424					0.08624978522175297
IILDMQENI	9	Oxidation (M)	_IILDM(Oxidation (M))QENI_		IILDM(1)QENI		IILDM(72)QENI	0	0	1		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.7886962890625	2	552.783907	1103.55326	-0.16692	-9.2269E-05	0.75076	0.00041501	0.58384	0.00032274	552.7840605061945	98.686	0.74529	98.518	98.285	99.03	-0.16778					35	16	3	0	0	0	0.32811	1	12235	12235		71.877	8.3436	1	165760			25520	664	17599	17637	29425	29425		17			0.005626422975410605
IILEHQLK	8	Unmodified	_IILEHQLK_					0	0	0			REV__ENST00000519752.1_1_5:156997722-157002671:-|nuORF;REV__nc|ENSG00000135074|Q9H013|ADAM19	REV__nc|ENSG00000135074|Q9H013|ADAM19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2843322753906	2	497.30821	992.601866	0.59564	0.00029622	-1.8396	-0.00091484	-1.2439	-0.00061862	497.30692578057676	82.118	0.77938	82.008	81.686	82.466	-0.11006					39	18	3	0	0	0	0.027866	1	10193	10193		47.916	0	1	1014100	+		25521	36684;34271	17600	17638	29426	29426					0.10526923719612569
IILEYVRY	8	Unmodified	_IILEYVRY_					0	0	0			REV__ENSG00000095261|ENST00000210313|PSMD5	REV__ENSG00000095261|ENST00000210313|PSMD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.3263549804688	2	534.808042	1067.60153	-0.54741	-0.00029276	2.5268	0.0013514	1.9794	0.0010586	534.8092867024857	77.905	0.59527	77.743	77.484	78.079	-0.16196					21	13	2	0	0	0	0.027866	1	9262	9262		55.504	27.622	1	136140	+		25522	20961	17601	17639	29427	29427					0.07043503999761924
IILGGLFPIH	10	Unmodified	_IILGGLFPIH_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.285888671875	2	540.334227	1078.6539	0.098844	5.3409E-05	-4.4545	-0.0024069	-4.3556	-0.0023535	540.331927435834	40.542	0.49164	40.43	40.172	40.664	-0.11222					26	13	3	0	0	0	0.03519	1	3515	3515		26.796	8.4717	1	223750			25523	1044	17602	17640	29428	29428					0.1177208713336313
IILGHLSMLKN	11	Unmodified	_IILGHLSMLKN_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8697509765625	2	619.868108	1237.72166	0.089003	5.517E-05	1.9977	0.0012383	2.0867	0.0012935	619.8691214704253	104.81	0.62352	104.69	104.38	105	-0.12561					43	18	3	0	0	0	1.0592	1	13059	13059		22.58	0	1	171530			25524	15587	17603	17641	29429	29429					0.11231169001871422
IILGLGLSGV	10	Unmodified	_IILGLGLSGV_					0	0	0			REV__ENSG00000155714|ENST00000424898|PDZD9	REV__ENSG00000155714|ENST00000424898|PDZD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.30908203125	2	471.305136	940.595718	5.7782	0.0027233	3.2777	0.0015448	9.0559	0.0042681	471.30652777434705	17.364	0.36707	17.425	17.287	17.654	0.06036					19	11	2	0	0	0	1.1147	1	131	131		18.324	0.95945	1	42022	+		25525	25020	17604	17642	29430	29430					0.12304405488100656
IILGSLGAGV	10	Unmodified	_IILGSLGAGV_					0	0	0			REV__nc|ENSG00000005893|P13473-2|LAMP2	REV__nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2816162109375	2	450.28166	898.548768	-0.071723	-3.2295E-05	-0.41514	-0.00018693	-0.48686	-0.00021923	450.28148265735507	102.93	0.7944	102.8	102.5	103.29	-0.12783					44	18	4	0	0	0	1.0665	1	12799	12799		37.159	3.6435	1	6408900	+		25526	36429	17605	17643	29431	29431					0.09543545936958253
IILGVFPFV	9	Unmodified	_IILGVFPFV_					0	0	0		ENSG00000157881|ENST00000378466|PANK4;ENST00000502512.1_3_1:2441299-2442819:-|nuORF;ENST00000471361.1_1_1:2441894-2444451:-|nuORF	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.8136901855469	2	502.812596	1003.61064	-0.30262	-0.00015216	2.2596	0.0011362	1.957	0.000984	502.8138186792779	96.134	1.9926	96.134	95.735	97.727	0					171	45	6	0	0	0	0.80342	1	12254	12254		39.021	1.8624	1	20832000			25527	6627	17606	17644	29432	29432					0.10897897356085195
IILGVFPFV	9	Unmodified	_IILGVFPFV_					0	0	0		ENSG00000157881|ENST00000378466|PANK4;ENST00000502512.1_3_1:2441299-2442819:-|nuORF;ENST00000471361.1_1_1:2441894-2444451:-|nuORF	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.8140563964844	2	502.812596	1003.61064	0.95576	0.00048057	0.96832	0.00048688	1.9241	0.00096745	502.8131940383032	96.131	1.8999	96.133	95.739	97.639	0.0020676					149	43	5	0	0	0	0.93795	1	12196	12196		29.842	0	1	20046000			25528	6627	17606	17644	29433	29433					0.10897897356085195
IILGVFPFV	9	Unmodified	_IILGVFPFV_					0	0	0		ENSG00000157881|ENST00000378466|PANK4;ENST00000502512.1_3_1:2441299-2442819:-|nuORF;ENST00000471361.1_1_1:2441894-2444451:-|nuORF	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.8139953613281	2	502.812596	1003.61064	0.44787	0.00022519	1.6937	0.00085163	2.1416	0.0010768	502.8135488206677	96.216	2.0121	96.08	95.682	97.694	-0.13671					136	45	5	0	0	0	0.93795	1	11913	11913		29.842	1.5873	1	16921000			25529	6627	17606	17644	29434	29434					0.10897897356085195
IILGVFPFV	9	Unmodified	_IILGVFPFV_					0	0	0		ENSG00000157881|ENST00000378466|PANK4;ENST00000502512.1_3_1:2441299-2442819:-|nuORF;ENST00000471361.1_1_1:2441894-2444451:-|nuORF	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.81378173828125	2	502.812596	1003.61064	0.69855	0.00035124	1.4917	0.00075004	2.1902	0.0011013	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	0.93795	1	11907	11907		29.842	1.9593	1	14776000			25530	6627	17606	17644	29435	29435					0.10897897356085195
IILHPKKS	8	Unmodified	_IILHPKKS_					0	0	0		ENST00000263468.12_1_11:101834399-101834507:+|nuORF	ENST00000263468.12_1_11:101834399-101834507:+|nuORF	ENST00000263468.12_1_11:101834399-101834507:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7389831542969	2	468.30547	934.596387	-0.15045	-7.0456E-05	-0.53212	-0.0002492	-0.68257	-0.00031965	468.30512582722895	26.464	0.4646	26.296	26.085	26.55	-0.16816					19	11	2	0	0	0	0.027866	1	1351	1351		35.201	17.836	1	139610			25531	11537	17607	17645	29436	29436					0.12647244927802603
IILIPEIEL	9	Unmodified	_IILIPEIEL_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.314697265625	2	526.833726	1051.6529	0.16482	8.6834E-05	1.2745	0.00067144	1.4393	0.00075827	526.8373891789943	75.161	0.35443	75.172	74.895	75.25	0.010376					11	8	2	0	0	0	0.024466	1	9101	9101		33.516	6.7195	1	75253	+		25532	27924	17608	17646	29437	29437					0.12913827973807201
IILIYRDT	8	Unmodified	_IILIYRDT_					0	0	0			REV__nc|ENSG00000150275|Q96QU1|PCDH15	REV__nc|ENSG00000150275|Q96QU1|PCDH15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2559814453125	2	503.800217	1005.58588	-0.37444	-0.00018864	-0.75622	-0.00038099	-1.1307	-0.00056963	503.7999632873625	38.714	0.62849	38.488	38.143	38.771	-0.2257					39	16	4	0	0	0	0.027866	1	3249	3249		20.482	0	1	651420	+		25533	36778	17609	17647	29438	29438					0.08331217482702868
IILKHFTE	8	Unmodified	_IILKHFTE_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3084716796875	2	500.794935	999.575317	-0.21063	-0.00010548	0.52865	0.00026475	0.31802	0.00015926	501.29683087178023	21.736	0.29049	21.545	21.42	21.71	-0.19072					11	5	3	0	0	0	0.027866	1	690	690		12.959	0	1	33805			25534	1536	17610	17648	29439	29439					0.07551234828281395
IILLIVAPLT	10	Unmodified	_IILLIVAPLT_					0	0	0			REV__ENST00000360160.8_1_Y:15030041-15030191:+|nuORF	REV__ENST00000360160.8_1_Y:15030041-15030191:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.300048828125	2	533.367736	1064.72092	-0.45365	-0.00024196	-2.7216	-0.0014516	-3.1753	-0.0016936	533.3652792755564	61.36	0.17901	61.133	60.974	61.153	-0.22663					6	4	2	0	0	0	0.03519	1	7049	7049		17.365	0	1	73455	+		25535	30898	17611	17649	29440	29440					0.19114697624445398
IILLKQGPPGT	11	Unmodified	_IILLKQGPPGT_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.8534545898438	2	568.855524	1135.69649	-0.46285	-0.00026329	-3.4276	-0.0019498	-3.8904	-0.0022131	568.8534480412821	101.18	1.7422	101.17	100.85	102.59	-0.0054398					103	39	5	0	0	0	0.95124	1	12906	12906		47.657	12.039	1	8581000	+		25536	28309	17612	17650	29441	29441					0.1340743747093711
IILLTKLCTI	10	Unmodified	_IILLTKLCTI_					0	0	0			REV__ENSG00000156298|ENST00000378482|TSPAN7	REV__ENSG00000156298|ENST00000378482|TSPAN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.4276123046875	2	565.864503	1129.71445	-0.18972	-0.00010736	-3.3095	-0.0018727	-3.4992	-0.0019801	566.3638691514515	105.35	0.22758	105.35	105.29	105.51	0.00096893					12	7	2	0	0	0	0.03519	1	13500	13500		74.255	15.473	1	89985	+		25537	25066	17613	17651	29442	29442					0.15478436401440376
IILLTKLCTI	10	Unmodified	_IILLTKLCTI_					0	0	0			REV__ENSG00000156298|ENST00000378482|TSPAN7	REV__ENSG00000156298|ENST00000378482|TSPAN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.4277954101562	2	565.864503	1129.71445	-0.58708	-0.00033221	-2.7526	-0.0015576	-3.3397	-0.0018898	565.8631603022286	105.47	0.32262	105.47	105.34	105.66	-0.00085449					15	10	2	0	0	0	0.03519	1	13481	13481		101.6	22.15	1	132790	+		25538	25066	17613	17651	29443	29443					0.15478436401440376
IILLVYLL	8	Unmodified	_IILLVYLL_					0	0	0			REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29248046875	2	480.330622	958.646691	0.09203	4.4205E-05	-1.28	-0.00061484	-1.188	-0.00057063	480.3301754770977	77.91	0.16678	77.748	77.611	77.778	-0.16196					5	3	2	0	0	0	0.027866	1	9258	9258		5.0869	0	1	34188	+		25539	23792	17614	17652	29444	29444					0.16571354532936766
IILNMELSL	9	Unmodified	_IILNMELSL_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3030395507812	2	523.301736	1044.58892	0.71479	0.00037405	2.7241	0.0014255	3.4389	0.0017996	523.3030106666264	20.029	0.39101	19.805	19.582	19.973	-0.22344					17	7	3	0	0	0	0.27161	1	468	468		79.451	5.196	1	308270			25540	6374	17615	17653	29445	29445					0.06840724545213561
IILPIKVTL	9	Unmodified	_IILPIKVTL_					0	0	0			REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF	REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3235168457031	2	505.354628	1008.6947	-0.4021	-0.0002032	0.13935	7.042E-05	-0.26275	-0.00013278	505.3554027067994	79.162	0.46021	79.162	78.741	79.201	0					22	10	3	0	0	0	0.024541	1	9782	9782		16.473	3.514	1	426600	+		25541	35564	17616	17654	29446	29446					0.19070428452994292
IILPQLVLN	9	Unmodified	_IILPQLVLN_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.833740234375	2	511.83406	1021.65357	-0.17938	-9.1814E-05	0.20414	0.00010449	0.024759	1.2672E-05	511.8339194335802	101.53	0.5661	101.53	101.25	101.82	0.0090332					28	12	3	0	0	0	0.40179	1	12976	12976		65.803	4.8312	1	277610			25542	3245	17617	17655	29447	29447					0.14360667413518513
IILPQLVLN	9	Unmodified	_IILPQLVLN_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.83404541015625	2	511.83406	1021.65357	-0.022021	-1.1271E-05	0.16252	8.3183E-05	0.1405	7.1912E-05	511.83391513684114	101.6	0.57304	101.6	101.31	101.89	-0.0054474					29	12	3	0	0	0	0.15889	1	12938	12938		97.473	18.022	1	280630			25543	3245	17617	17655	29448	29448					0.14360667413518513
IILPQLVLN	9	Unmodified	_IILPQLVLN_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.83406	1021.65357	0.44026	0.00022534	-0.44525	-0.00022789	-0.0049887	-2.5534E-06	511.8335695770345	101.45	0.59036	101.32	101	101.59	-0.13156	-0.10355	-0.00048016	NaN	97.473	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70060			25544	3245	17617	17655							0.14360667413518513
IILPQLVLN	9	Unmodified	_IILPQLVLN_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	511.83406	1021.65357	0.24113	0.00012342	-0.52084	-0.00026658	-0.27971	-0.00014316	511.83366912510616	101.37	0.38962	101.24	101.03	101.42	-0.12576	-0.18184	-0.00055754	NaN	97.473	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91671			25545	3245	17617	17655							0.14360667413518513
IILPQLVLN	9	Unmodified	_IILPQLVLN_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.83406	1021.65357	0.097818	5.0066E-05	-0.27019	-0.00013829	-0.17237	-8.8225E-05	511.83381859888993	101.48	0.41512	101.3	101.1	101.52	-0.17178	-0.12221	-0.00030096	NaN	97.473	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97940			25546	3245	17617	17655							0.14360667413518513
IILPSKTT	8	Unmodified	_IILPSKTT_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7751159667969	2	436.776211	871.537869	-0.55494	-0.00024239	-2.6294	-0.0011485	-3.1844	-0.0013909	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	1.0572	1	11038	11038		28.254	2.8041	1	24367000	+		25547	26624	17618	17656	29449	29449					0.09696143562666748
IILQFLIFD	9	Unmodified	_IILQFLIFD_					0	0	0		nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-4|NRP2	nc|ENSG00000118257|O60462-4|NRP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.3358764648438	2	561.333893	1120.65323	-0.65663	-0.00036859	2.933	0.0016464	2.2764	0.0012778	561.3351380858587	104.95	0.35066	104.82	104.6	104.95	-0.13099					25	11	3	0	0	0	0.83071	1	13071	13071		37.159	9.0776	1	99643			25548	3674	17619	17657	29450	29450					0.09773247693669873
IILRGIDM	8	Unmodified	_IILRGIDM_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7774963378906	2	465.775688	929.536823	0.30012	0.00013979	3.7382	0.0017412	4.0383	0.001881	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.78609	1	9888	9888		60.294	15.763	1	1281300			25549	9450	17620	17658	29451	29451					0.06923605922122533
IILRRKHGDS	10	Unmodified	_IILRRKHGDS_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8566284179688	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.089	1	11498	11498		34.173	3.8548	1	5655800	+		25550	25017;36804	17621	17659	29452	29452					0.11018705648461946
IILSFKLWLY	10	Unmodified	_IILSFKLWLY_					0	0	0			REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	648.392822265625	2	648.391742	1294.76893	-0.46644	-0.00030244	2.0898	0.001355	1.6234	0.0010526	648.3929857733464	105.5	0.73857	105.37	104.95	105.69	-0.13099					49	24	4	0	0	0	1.1283	1	13156	13156		25.45	0	1	1002700	+		25551	20998	17622	17660	29453	29453					0.1333377154453501
IILSRGVEF	9	Unmodified	_IILSRGVEF_					0	0	0			REV__ENST00000398571.6_2_2:61505385-61505538:-|nuORF	REV__ENST00000398571.6_2_2:61505385-61505538:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7844848632812	2	517.305667	1032.59678	-1.0294	-0.0005325	0.2275	0.00011769	-0.80187	-0.00041481	517.3055993344302	44.281	0.65963	44.176	43.889	44.549	-0.10468					47	17	4	0	0	0	0.02435	1	4148	4148		42.396	3.59	1	1395300	+		25552	31801	17623	17661	29454	29454					0.08178619856994374
IILTHGAS	8	Unmodified	_IILTHGAS_					0	0	0		TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant;nc|ENSG00000151287|Q5JUR7-2|TEX30;ENSG00000151287|ENST00000376032|TEX30	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.2486877441406	2	406.237253	810.459953	0.91299	0.00037089	1.8788	0.00076324	2.7918	0.0011341	406.2380293748567	87.628	0.12484	87.593	87.489	87.614	-0.035355					4	2	2	0	0	0	0.027866	1	10989	10989		42.474	13.325	1	224410			25553	6192	17624	17662	29455	29455					0.047141306972775965
IILTHGAS	8	Unmodified	_IILTHGAS_					0	0	0		TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant;nc|ENSG00000151287|Q5JUR7-2|TEX30;ENSG00000151287|ENST00000376032|TEX30	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.2485656738281	2	406.237253	810.459953	1.0907	0.00044306	1.4491	0.00058866	2.5397	0.0010317	406.23770167793094	88.223	0.20999	88.195	88.05	88.26	-0.027657					6	4	2	0	0	0	0.027866	1	11073	11073		50.025	7.5501	1	53255			25554	6192	17624	17662	29456	29456					0.047141306972775965
IILTHGAS	8	Unmodified	_IILTHGAS_					0	0	0		TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant;nc|ENSG00000151287|Q5JUR7-2|TEX30;ENSG00000151287|ENST00000376032|TEX30	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2479248046875	2	406.237253	810.459953	0.88106	0.00035792	-2.4196	-0.00098295	-1.5386	-0.00062503	406.23699548982614	88.043	0.39168	87.912	87.803	88.194	-0.13135					14	9	2	0	0	0	0.027866	1	10767	10767		42.474	8.9589	1	328410			25555	6192	17624	17662	29457	29457					0.047141306972775965
IILTHGAS	8	Unmodified	_IILTHGAS_					0	0	0		TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant;nc|ENSG00000151287|Q5JUR7-2|TEX30;ENSG00000151287|ENST00000376032|TEX30	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	TEX30|p.Y30C|1|0.66|ENSG00000151287|chr13:102769468-102769468|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	406.237253	810.459953	1.3666	0.00055516	-5.0642	-0.0020573	-3.6976	-0.0015021	406.23333192871905	87.67	0.32191	87.67	87.406	87.728	0	0.03869	-0.00034207	NaN	42.474	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	727390			25556	6192	17624	17662							0.047141306972775965
IILTTKPLV	9	Unmodified	_IILTTKPLV_					0	0	0			REV__MAPKAPK2-SRGAP2|1|fusion	REV__MAPKAPK2-SRGAP2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3249206542969	2	499.336436	996.658318	1.8135	0.00090554	-0.57445	-0.00028685	1.239	0.0006187	499.336065913365	63.697	0.39245	63.751	63.555	63.947	0.054104					14	10	2	0	0	0	0.023239	1	7363	7363		64.207	2.0999	1	167970	+		25557	29138	17625	17663	29458	29458					0.15985551556286737
IIMAHCSLNL	10	Unmodified	_IIMAHCSLNL_					0	0	0		ENST00000606723.2_1_6:25998815-25999043:+|nuORF	ENST00000606723.2_1_6:25998815-25999043:+|nuORF	ENST00000606723.2_1_6:25998815-25999043:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2901611328125	2	557.791012	1113.56747	-0.61783	-0.00034462	-4.3085	-0.0024033	-4.9264	-0.0027479	557.7924388307744	57.86	0.51053	57.626	57.312	57.822	-0.23363					33	12	4	0	0	0	0.85955	1	6337	6337		56.721	1.2168	1	2263000			25558	17567	17626	17664	29459	29459					0.015230162448233386
IIMAKPYE	8	Unmodified	_IIMAKPYE_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.7623291015625	2	482.762246	963.50994	0.48268	0.00023302	-0.32722	-0.00015797	0.15546	7.5052E-05	482.7619029177118	86.128	0.91544	85.991	85.702	86.618	-0.13734					52	20	4	0	0	0	0.96719	1	10468	10468		42.474	0	1	640690			25559	15486	17627	17665	29460	29460					0.026724973109139682
IIMGKSHVF	9	Unmodified	_IIMGKSHVF_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.3136596679688	2	516.288963	1030.56337	1.2296	0.00063481	-2.2121	-0.0011421	-0.98258	-0.00050729	516.2875484361986	97.954	0.10822	97.83	97.773	97.882	-0.12413					4	2	2	0	0	0	0.024487	1	12133	12133		24.203	0	1	111350			25560	4407	17628	17666	29461	29461					0.04931294813445675
IIMKDEIIP	9	Unmodified	_IIMKDEIIP_					0	0	0		ENSG00000182359|ENST00000531837|KBTBD3;ENST00000528483.1_1_11:105929560-105929824:-|nuORF	ENSG00000182359|ENST00000531837|KBTBD3	ENSG00000182359|ENST00000531837|KBTBD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2948608398438	2	536.309561	1070.60457	-0.71452	-0.0003832	3.5659	0.0019124	2.8514	0.0015292	536.3115259502939	56.318	0.57288	56.318	56.035	56.608	0					39	14	4	0	0	0	0.022587	1	6277	6277		96.19	34.083	1	1636400			25561	9131	17629	17667	29462	29462					0.07209011062241188
IIMKDVPDW	9	Unmodified	_IIMKDVPDW_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.791748046875	2	558.791535	1115.56852	-0.51752	-0.00028918	0.86481	0.00048325	0.34729	0.00019407	558.7914458431301	65.225	0.77914	64.99	64.728	65.507	-0.2345					56	18	6	0	0	0	0.094442	1	7445	7445		112.41	35.093	1	1601000			25562	9504	17630	17668	29463	29463					0.015355538853782491
IIMKDVPDW	9	Unmodified	_IIMKDVPDW_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.791535	1115.56852	-1.271	-0.00071024	0.9953	0.00055616	-0.27573	-0.00015407	558.7917636522513	65.205	0.9836	65.002	64.697	65.681	-0.20254	0.016047	0.00019192	NaN	112.41	56	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1710000			25563	9504	17630	17668							0.015355538853782491
IIMKDVPDW	9	Unmodified	_IIMKDVPDW_					0	0	0		ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	ENSG00000186010|ENST00000507754|NDUFA13	ENSG00000186010|ENST00000507754|NDUFA13	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.791535	1115.56852	-0.69868	-0.00039042	0.66106	0.00036939	-0.037624	-2.1024E-05	558.7915939823085	65.217	1.0528	64.966	64.508	65.561	-0.25112	-0.020132	-0.00018162	NaN	112.41	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1625500			25564	9504	17630	17668							0.015355538853782491
IIMLIVAPGW	10	Unmodified	_IIMLIVAPGW_					0	0	0			REV__nc|ENSG00000198270|Q8NCL8|TMEM116	REV__nc|ENSG00000198270|Q8NCL8|TMEM116	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.7319946289062	2	556.830463	1111.64637	-0.49023	-0.00027297	3.5606	0.0019827	3.0704	0.0017097	556.8321321845286	32.262	0.17245	32.104	31.991	32.163	-0.15772					5	3	2	0	0	0	0.03519	1	2191	2191		26.796	8.534	1	34002	+		25565	28407	17631	17669	29464	29464					0.09501611541418242
IIMMCVAF	8	Unmodified	_IIMMCVAF_					0	0	0		nc|ENSG00000214787|Q96PG1|MS4A4E	nc|ENSG00000214787|Q96PG1|MS4A4E	nc|ENSG00000214787|Q96PG1|MS4A4E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.25042724609375	2	464.22867	926.442788	-0.45122	-0.00020947	1.8093	0.00083995	1.3581	0.00063048	464.2296280153355	47.995	0.12467	47.842	47.734	47.858	-0.15301					6	3	2	0	0	0	0.027866	1	4831	4831		33.493	5.6107	1	140860			25566	18717	17632	17670	29465	29465					-0.0233757249603741
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1;ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.3162841796875	2	557.309895	1112.60524	0.28675	0.00015981	0.7571	0.00042194	1.0438	0.00058175	557.3101526072207	69.714	0.82593	69.421	69.01	69.836	-0.29292					26	11	3	0	0	0	0.024	1	8384	8384		76.847	36.274	1	1994100			25567	940	17633	17671	29466	29466					0.053438505019585136
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1;ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.311279296875	2	557.309895	1112.60524	0.11731	6.538E-05	0.34464	0.00019207	0.46196	0.00025745	557.3100791408613	69.549	0.53291	69.298	68.95	69.483	-0.25063					22	12	2	0	0	0	0.062871	2	8082	8082;8095		123.99	56.495	1	1377200			25568	940	17633	17671	29467;29468	29467					0.053438505019585136
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1;ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.3106079101562	2	557.309895	1112.60524	-0.32985	-0.00018383	0.84349	0.00047008	0.51364	0.00028626	557.3102145246752	69.541	0.53586	69.319	68.978	69.514	-0.22245					31	12	3	0	0	0	0.062871	2	8065	8065;8078		123.99	25.359	1	1377000			25569	940	17633	17671	29469;29470	29469					0.053438505019585136
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1;ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	SLC11A1|p.L403Sfs*20|1|0.2|ENSG00000018280|chr2:218393019-218393020|-/CT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.309895	1112.60524	-0.64494	-0.00035943	2.7962	0.0015584	2.1513	0.0011989	557.3104519891547	69.625	0.75289	69.358	69.121	69.874	-0.26725	0.0041164	0.0021875	NaN	76.847	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121800			25570	940	17633	17671							0.053438505019585136
IIMRLDPSF	9	Unmodified	_IIMRLDPSF_					0	0	0			REV__ENST00000495134.5_1_11:95620902-95621397:-|nuORF	REV__ENST00000495134.5_1_11:95620902-95621397:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2755737304688	2	546.299527	1090.5845	-1.0161	-0.00055509	-1.9825	-0.001083	-2.9986	-0.0016381	546.8008990064938	79.664	0.37625	79.684	79.436	79.812	0.019905					14	8	2	0	0	0	0.024541	1	9800	9800		23.042	6.5693	1	51199	+		25571	33794	17634	17672	29471	29471					0.042832601222926314
IIMVNSVSDL	10	Unmodified	_IIMVNSVSDL_					0	0	0		nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2747802734375	2	545.794275	1089.574	-0.79549	-0.00043417	1.1108	0.00060626	0.3153	0.00017209	545.7944336427096	78.919	0.54362	78.919	78.658	79.201	0					26	12	3	0	0	0	0.03519	1	9784	9784		79.451	5.196	1	225330			25572	1161	17635	17673	29472	29472					0.0327923267720962
IINISPIEQ	9	Unmodified	_IINISPIEQ_					0	0	0			REV__ENSG00000283434|ENST00000637986|CSNKA2IP	REV__ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.7789916992188	2	513.795132	1025.57571	0.19139	9.8337E-05	-2.2791	-0.001171	-2.0877	-0.0010726	513.79320888209	75.338	1.273	75.163	74.858	76.131	-0.17548					67	31	3	0	0	0	0.0242	1	8938	8938		69.628	8.6557	1	923730	+		25573	29244	17636	17674	29473	29473					0.06394609757467151
IINKGDLW	8	Unmodified	_IINKGDLW_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7712707519531	2	479.77146	957.528367	0.010647	5.1081E-06	0.35446	0.00017006	0.3651	0.00017517	479.7714111398097	88.589	0.99354	88.418	87.931	88.924	-0.17053					67	23	4	0	0	0	0.40853	1	10808	10808		96.048	7.4049	1	2066700			25574	5635	17637	17675	29474	29474					0.04790375277127623
IINKGTKDVLL	11	Unmodified	_IINKGTKDVLL_					0	0	0			REV__ENSG00000118855|ENST00000415822|MFSD1	REV__ENSG00000118855|ENST00000415822|MFSD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.3760986328125	2	607.379363	1212.74417	-0.37499	-0.00022776	-3.3262	-0.0020202	-3.7011	-0.002248	607.3772016993306	97.913	0.61599	97.748	97.351	97.967	-0.16521					25	14	2	0	0	0	1.0429	1	12092	12092		27.047	1.4733	1	263070	+		25575	22426	17638	17676	29475	29475					0.14631091671139984
IINKKIWR	8	Unmodified	_IINKKIWR_					0	0	0		nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENST00000448213.2_1_1:81967523-81968357:+|nuORF;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B	nc|ENSG00000179361|Q8IVW6-3|ARID3B	nc|ENSG00000179361|Q8IVW6-3|ARID3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.81494140625	2	535.845294	1069.67603	-0.33985	-0.00018211	3.8183	0.002046	3.4784	0.0018639	535.8478043813464	71.586	0.3317	71.596	71.472	71.803	0.010735					10	8	2	0	0	0	0.027866	1	8630	8630		35.201	10.998	1	101300			25576	18554	17639	17677	29476	29476					0.14398311601780733
IINLLNKIF	9	Unmodified	_IINLLNKIF_					0	0	0			REV__nc|ENSG00000166006|Q96PR1-4|KCNC2	REV__nc|ENSG00000166006|Q96PR1-4|KCNC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3471069335938	2	544.347335	1086.68012	0.035767	1.947E-05	-0.17223	-9.375E-05	-0.13646	-7.428E-05	544.3471106564123	78.67	1.2238	78.439	78.091	79.315	-0.23141					76	28	5	0	0	0	0.72875	1	9405	9405		44.117	6.9577	1	2889500	+		25577	25957	17640	17678	29477	29477					0.14024356304844332
IINLLVPS	8	Unmodified	_IINLLVPS_					0	0	0		YEATS2-HTR3C|1|fusion;ENSG00000178084|ENST00000318351|HTR3C	YEATS2-HTR3C|1|fusion	YEATS2-HTR3C|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.78021240234375	2	434.778754	867.542954	-0.63702	-0.00027696	4.1615	0.0018093	3.5245	0.0015324	434.7804586001769	39.007	1.1435	38.908	38.737	39.88	-0.098755					106	31	4	0	0	0	1.0133	1	3310	3310		35.201	1.6851	1	3134400			25578	38163	17641	17679	29478	29478					0.10388447425282266
IINLLVPS	8	Unmodified	_IINLLVPS_					0	0	0		YEATS2-HTR3C|1|fusion;ENSG00000178084|ENST00000318351|HTR3C	YEATS2-HTR3C|1|fusion	YEATS2-HTR3C|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7799377441406	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	0.95417	1	3513	3513		44.531	2.0566	1	6285600			25579	38163	17641	17679	29479	29479					0.10388447425282266
IINLLVPS	8	Unmodified	_IINLLVPS_					0	0	0		YEATS2-HTR3C|1|fusion;ENSG00000178084|ENST00000318351|HTR3C	YEATS2-HTR3C|1|fusion	YEATS2-HTR3C|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7799987792969	2	434.778754	867.542954	-0.21804	-9.48E-05	3.4579	0.0015034	3.2399	0.0014086	434.7801379909437	46.891	1.0545	46.95	46.623	47.677	0.059097					87	29	4	0	0	0	1.0133	1	4604	4604		35.201	1.6851	1	2944300			25580	38163	17641	17679	29480	29480					0.10388447425282266
IINLLVPS	8	Unmodified	_IINLLVPS_					0	0	0		YEATS2-HTR3C|1|fusion;ENSG00000178084|ENST00000318351|HTR3C	YEATS2-HTR3C|1|fusion	YEATS2-HTR3C|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7792663574219	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	1.0133	1	4020	4020		35.201	1.6851	1	4335900			25581	38163	17641	17679	29481	29481					0.10388447425282266
IINLPVNVK	9	Unmodified	_IINLPVNVK_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3161315917969	2	505.32386	1008.63317	-0.75385	-0.00038094	-0.27713	-0.00014004	-1.031	-0.00052098	505.324085613359	79.222	5.1637	79.05	78.611	83.775	-0.17226					329	123	6	0	0	0	0.55828	1	9905	9905		55.504	9.5523	1	92209000	+		25582	25596	17642	17680	29482	29482					0.12919496753704607
IINLSNKIF	9	Unmodified	_IINLSNKIF_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3218383789062	2	531.321317	1060.62808	-0.66702	-0.0003544	0.33653	0.00017881	-0.33049	-0.00017559	531.3215053028329	75.418	1.0007	75.173	74.798	75.799	-0.24455					53	26	3	0	0	0	0.50848	1	9223	9223		58.782	3.2778	1	1601600	+		25583	23034	17643	17681	29483	29483					0.1001919289108173
IINPVTREW	9	Unmodified	_IINPVTREW_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.3139038085938	2	564.314023	1126.61349	0.78266	0.00044167	-1.0449	-0.00058966	-0.26225	-0.00014799	564.3134419251344	59.575	0.55971	59.377	59.091	59.651	-0.19742					30	13	3	0	0	0	0.32064	2	6585	6585;6595		72.879	21.544	1	1699800			25584	9658	17644	17682	29484;29485	29484					0.05525120742936451
IINPVTREW	9	Unmodified	_IINPVTREW_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.3132934570312	2	564.314023	1126.61349	0.59643	0.00033657	-0.61097	-0.00034478	-0.01454	-8.2053E-06	564.3136728952741	59.448	0.75575	59.267	58.831	59.587	-0.18134					40	18	3	0	0	0	0.35556	2	6581	6571;6581		68.846	19.358	1	1800200			25585	9658	17644	17682	29486;29487	29487					0.05525120742936451
IINPVTREW	9	Unmodified	_IINPVTREW_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.3136596679688	2	564.314023	1126.61349	0.10709	6.0431E-05	-0.17383	-9.8097E-05	-0.066746	-3.7666E-05	564.3138873255734	59.631	0.63846	59.382	59.01	59.648	-0.24841					38	15	3	0	0	0	0.46427	1	6579	6579		61.691	3.88	1	1609800			25586	9658	17644	17682	29488	29488					0.05525120742936451
IINQTCLLP	9	Carbamidomethyl (C)	_IINQTC(Carbamidomethyl (C))LLP_	IINQTC(1)LLP		IINQTC(110)LLP		0	1	0			REV__ZNF570|p.K181N|1|0.19|ENSG00000171827|chr19:37484165-37484165|G/C|missense_variant	REV__ZNF570|p.K181N|1|0.19|ENSG00000171827|chr19:37484165-37484165|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2948608398438	2	536.296985	1070.57942	-0.7187	-0.00038544	-3.0901	-0.0016572	-3.8088	-0.0020426	536.2951647119206	56.297	0.73697	56.297	56.104	56.841	0					39	20	2	0	0	0	0.022083	1	6277	6277		111.65	12.273	1	3279300	+		25587	37810	17645	17683	29489	29489	490				0.046949562596637406
IINSALLEL	9	Unmodified	_IINSALLEL_					0	0	0			REV__ENSG00000120685|ENST00000352251|PROSER1	REV__ENSG00000120685|ENST00000352251|PROSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30084228515625	2	493.30005	984.585547	-0.06341	-3.128E-05	-0.98404	-0.00048543	-1.0475	-0.00051671	493.2996364666956	56.587	0.54724	56.587	56.388	56.936	0					36	15	4	0	0	0	0.1158	1	6304	6304		107.01	10.817	1	4354200	+		25588	22547	17646	17684	29490	29490					0.09263797762855575
IINSGWFSL	9	Unmodified	_IINSGWFSL_					0	0	0			REV__OR8K1|p.C175W|1|0.3|ENSG00000150261|chr11:56346563-56346563|T/G|missense_variant	REV__OR8K1|p.C175W|1|0.3|ENSG00000150261|chr11:56346563-56346563|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.26025390625	2	518.776742	1035.53893	0.26107	0.00013544	1.1911	0.00061793	1.4522	0.00075336	518.7761346659881	57.657	0.60707	57.467	57.222	57.829	-0.19017					37	15	4	0	0	0	0.024367	1	6348	6348		44.377	3.599	1	1630000	+		25589	37334	17647	17685	29491	29491					0.022583579315551106
IINVLLQNN	9	Unmodified	_IINVLLQNN_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3247680664062	2	520.808574	1039.60259	-0.41942	-0.00021844	0.64426	0.00033554	0.22484	0.0001171	520.8082065904496	49.639	0.80296	49.639	49.249	50.052	0					27	21	2	0	0	0	0.024381	1	5108	5108		29.15	10.825	1	536130			25590	6183;18381	17648	17686	29492	29492					0.08437718368668357
IINVVTVGQG	10	Unmodified	_IINVVTVGQG_					0	0	0		ENST00000469537.1_1_1:156168901-156169084:+|nuORF	ENST00000469537.1_1_1:156168901-156169084:+|nuORF	ENST00000469537.1_1_1:156168901-156169084:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27685546875	2	500.295299	998.576045	-0.13326	-6.667E-05	-4.2495	-0.002126	-4.3828	-0.0021927	500.29300991884406	61.388	0.40093	61.161	60.86	61.261	-0.22663					21	10	3	0	0	0	0.03519	1	7048	7048		26.693	2.4902	1	300420			25591	14907	17649	17687	29493	29493					0.07670029477344542
IIPCTAPDSAF	11	Unmodified	_IIPCTAPDSAF_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.781982421875	2	567.778625	1133.5427	4.4734	0.0025399	1.8118	0.0010287	6.2853	0.0035686	567.7794900159628	17.493	0.69401	17.554	17.209	17.903	0.06036					54	20	4	0	0	0	0.93615	1	133	133		49.442	15.269	1	200990	+		25592	21657	17650	17688	29494	29494					-0.018733403569058282
IIPFLNPII	9	Unmodified	_IIPFLNPII_					0	0	0		nc|ENSG00000232535|P0DN80|OR5H8	nc|ENSG00000232535|P0DN80|OR5H8	nc|ENSG00000232535|P0DN80|OR5H8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2743530273438	2	520.331153	1038.64775	-1.1342	-0.00059017	-4.2837	-0.0022289	-5.4179	-0.0028191	520.3288505728999	38.039	0.40464	37.956	37.777	38.182	-0.082516					17	11	2	0	0	0	0.024541	1	3160	3160		13.775	3.5101	1	109650			25593	18747	17651	17689	29495	29495					0.12997568901823797
IIPHILNFQV	10	Unmodified	_IIPHILNFQV_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.35400390625	2	597.355691	1192.69683	-0.47193	-0.00028191	-1.6987	-0.0010148	-2.1707	-0.0012967	597.3537728093169	103.83	1.2432	103.82	103.23	104.47	-0.0032196					82	29	5	0	0	0	1.1329	1	13247	13247		27.882	1.0861	1	650120	+		25594	22662	17652	17690	29496	29496					0.10818857190793096
IIPPFLCAL	9	Unmodified	_IIPPFLCAL_					0	0	0			REV__ENST00000381990.6_1_7:23300239-23300272:+|nuORF	REV__ENST00000381990.6_1_7:23300239-23300272:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7793273925781	2	493.790807	985.56706	-0.38823	-0.0001917	-0.98996	-0.00048883	-1.3782	-0.00068054	493.7902976366006	24.327	0.38697	24.111	23.909	24.296	-0.2151					13	8	2	0	0	0	0.024289	1	1027	1027		49.211	9.958	1	70949	+		25595	31532	17653	17691	29497	29497					0.07369964587292088
IIPPHLQGL	9	Unmodified	_IIPPHLQGL_					0	0	0		nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.3005676269531	2	494.302927	986.591301	-0.25601	-0.00012655	-4.2602	-0.0021058	-4.5162	-0.0022324	494.30075389334326	96.309	2.5046	96.153	95.62	98.125	-0.15646					207	58	7	0	0	0	0.97516	1	11984	11984		25.45	3.4903	1	35328000			25596	1643	17654	17692	29498	29498					0.09746941065179726
IIPPTLNDVLI	11	Unmodified	_IIPPTLNDVLI_					0	0	0		ENSG00000146399|ENST00000275216|TAAR1	ENSG00000146399|ENST00000275216|TAAR1	ENSG00000146399|ENST00000275216|TAAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3668212890625	2	604.368464	1206.72238	-1.4686	-0.00088758	-1.3678	-0.00082668	-2.8364	-0.0017143	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.0013	1	13254	13254		33.922	9.4024	1	4767200			25597	5877	17655	17693	29499	29499					0.12728286922560983
IIPPTLNDVLI	11	Unmodified	_IIPPTLNDVLI_					0	0	0		ENSG00000146399|ENST00000275216|TAAR1	ENSG00000146399|ENST00000275216|TAAR1	ENSG00000146399|ENST00000275216|TAAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.24725341796875	3	403.248068	1206.72238	0.89611	0.00036136	-3.8306	-0.0015447	-2.9345	-0.0011833	403.2465158777741	103.32	1.28	103.32	102.88	104.16	0					75	30	5	0	0	0	1.0712	1	13255	13255		19.263	1.4295	1	2354300			25598	5877	17655	17693	29500	29500					0.12728286922560983
IIPRATLNY	9	Unmodified	_IIPRATLNY_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2766723632812	2	530.811116	1059.60768	-0.52503	-0.00027869	-0.3159	-0.00016769	-0.84093	-0.00044638	530.810155131742	59.035	0.47541	58.847	58.584	59.06	-0.18795					24	11	3	0	0	0	0.024205	1	6491	6491		63.306	0	1	560250	+		25599	23210	17656	17694	29501	29501					0.0802602223127451
IIPRATLNY	9	Unmodified	_IIPRATLNY_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2769165039062	2	530.811116	1059.60768	-0.21203	-0.00011255	-0.54849	-0.00029114	-0.76052	-0.00040369	530.8095257432889	58.841	0.68637	58.66	58.386	59.072	-0.18134					31	16	3	0	0	0	0.023817	1	6467	6467		71.296	5.4925	1	594660	+		25600	23210	17656	17694	29502	29502					0.0802602223127451
IIPRATLNY	9	Unmodified	_IIPRATLNY_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2770385742188	2	530.811116	1059.60768	0.51145	0.00027149	1.5128	0.00080302	2.0243	0.0010745	530.8115829124879	59.01	0.75762	58.768	58.502	59.259	-0.24165					40	18	4	0	0	0	0.021088	1	6461	6461		102.77	8.7669	1	1143500	+		25601	23210	17656	17694	29503	29503					0.0802602223127451
IIPSAWSFC	9	Unmodified	_IIPSAWSFC_					0	0	0			REV__ENST00000550560.1_1_19:58512579-58514018:-|nuORF	REV__ENST00000550560.1_1_19:58512579-58514018:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.25341796875	2	512.252046	1022.48954	0.46489	0.00023814	1.7406	0.00089163	2.2055	0.0011298	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.67308	1	5745	5745		47.916	1.1492	1	42815000	+		25602	34910	17657	17695	29504	29504					-0.020806733488939244
IIPSPNVMPQ	10	Unmodified	_IIPSPNVMPQ_					0	0	0		nc|ENSG00000118407|Q7Z7B0-3|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;ENSG00000118407|ENST00000237172|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.29541015625	2	548.296985	1094.57942	-0.80448	-0.0004411	-2.3913	-0.0013112	-3.1958	-0.0017523	548.2957619915276	19.826	2.2552	19.707	19.446	21.701	-0.11872					130	46	5	0	0	0	0.98754	1	470	470		47.657	8.4045	1	5925800			25603	3680	17658	17696	29505	29505					0.03590956259677114
IIPVGLPTVW	10	Unmodified	_IIPVGLPTVW_					0	0	0			REV__ENST00000593183.2_1_19:16013215-16014022:-|nuORF	REV__ENST00000593183.2_1_19:16013215-16014022:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2869873046875	2	547.83406	1093.65357	-0.49999	-0.00027391	-3.6675	-0.0020092	-4.1675	-0.0022831	547.8319404519973	47.767	0.40643	47.669	47.485	47.892	-0.097553					21	10	3	0	0	0	0.03519	1	4694	4694		38.806	12.01	1	205010	+		25604	35761	17659	17697	29506	29506					0.11048667413524527
IIPVGLPTVW	10	Unmodified	_IIPVGLPTVW_					0	0	0			REV__ENST00000593183.2_1_19:16013215-16014022:-|nuORF	REV__ENST00000593183.2_1_19:16013215-16014022:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.28759765625	2	547.83406	1093.65357	-0.78406	-0.00042953	-3.542	-0.0019404	-4.326	-0.00237	547.8320322546477	48.122	0.45131	47.846	47.664	48.116	-0.27598					26	11	3	0	0	0	0.03519	1	4716	4716		38.806	0	1	375190	+		25605	35761	17659	17697	29507	29507					0.11048667413524527
IIPVPHETE	9	Unmodified	_IIPVPHETE_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.292724609375	2	517.779482	1033.54441	-0.69298	-0.00035881	4.2388	0.0021947	3.5458	0.0018359	517.7815169436421	31.846	0.36032	31.846	31.669	32.03	0					23	8	3	0	0	0	0.024436	1	2179	2179		30.504	0	1	396170	+		25606	25795	17660	17698	29508	29508					0.028980367233543802
IIQADKLLD	9	Unmodified	_IIQADKLLD_					0	0	0		DMD|p.T1700K|1|0.18|ENSG00000198947|chrX:32364637-32364637|G/T|missense_variant	DMD|p.T1700K|1|0.18|ENSG00000198947|chrX:32364637-32364637|G/T|missense_variant	DMD|p.T1700K|1|0.18|ENSG00000198947|chrX:32364637-32364637|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.816650390625	2	514.802957	1027.59136	0.62672	0.00032264	0.22354	0.00011508	0.85025	0.00043771	514.8027313597485	72.482	0.19994	72.201	72.062	72.262	-0.28124					7	4	2	0	0	0	0.024261	1	8791	8791		37.812	18.708	1	227570			25607	645	17661	17699	29509	29509					0.0786689627452688
IIQAKNKELE	10	Unmodified	_IIQAKNKELE_					0	0	0		ENSG00000112130|ENST00000373479|RNF8;ENST00000229866.10_1_6:37328318-37358531:+|nuORF;nc|ENSG00000112130|O76064-3|RNF8	ENSG00000112130|ENST00000373479|RNF8	ENSG00000112130|ENST00000373479|RNF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	592.8682250976562	2	593.34552	1184.67649	0.26785	0.00015893	-2.3895	-0.0014178	-2.1217	-0.0012589	593.343935446583	102.33	0.53086	102.32	102.06	102.59	-0.0054474					19	11	2	0	0	0	0.03519	1	13066	13066		32.812	11.865	1	202060			25608	3173	17662	17700	29510	29510					0.09153641740317653
IIQELEKQL	9	Unmodified	_IIQELEKQL_					0	0	0		nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3259887695312	2	557.329339	1112.64412	-0.11046	-6.1563E-05	-0.77695	-0.00043301	-0.88741	-0.00049458	557.3286296020605	53.689	0.88516	53.785	53.407	54.292	0.095669					66	24	5	0	0	0	0.062622	1	5749	5749		124.08	11.669	1	3401500			25609	6390	17663	17701	29511	29511					0.0923085433732922
IIQGDRILPV	10	Unmodified	_IIQGDRILPV_					0	0	0		ENST00000315872.10_1_2:11323403-11323562:-|nuORF	ENST00000315872.10_1_2:11323403-11323562:-|nuORF	ENST00000315872.10_1_2:11323403-11323562:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3432006835938	2	562.345323	1122.67609	-0.75901	-0.00042683	-2.6727	-0.001503	-3.4317	-0.0019298	562.3436714978816	89.172	2.615	89.009	88.263	90.878	-0.1626					183	62	4	0	0	0	1.0719	1	10923	10923		36.447	0.82846	1	736810			25610	12141	17664	17702	29512	29512					0.11966266811123205
IIQHQVLTD	9	Unmodified	_IIQHQVLTD_					0	0	0			REV__ENSG00000131845|ENST00000282286|ZNF304	REV__ENSG00000131845|ENST00000282286|ZNF304	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.255126953125	2	533.798206	1065.58186	-1.1839	-0.00063199	-0.45582	-0.00024332	-1.6398	-0.00087531	533.7977701325418	39.091	0.45713	38.927	38.659	39.116	-0.16458					30	12	3	0	0	0	0.024541	1	3242	3242		10.866	0	1	325870	+		25611	23237	17665	17703	29513	29513					0.05169127988983746
IIQIAGLTKG	10	Unmodified	_IIQIAGLTKG_					0	0	0			REV__ENSG00000166959|ENST00000300226|MS4A8	REV__ENSG00000166959|ENST00000300226|MS4A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8030700683594	2	507.321317	1012.62808	-0.61896	-0.00031401	0.33958	0.00017228	-0.27937	-0.00014173	507.3213752635207	91.244	0.53926	91.121	90.874	91.413	-0.12341					27	12	3	0	0	0	0.03519	1	11172	11172		39.253	16.21	1	220200	+		25612	26089	17666	17704	29514	29514					0.12227192891100458
IIQIMKMR	8	Unmodified	_IIQIMKMR_					0	0	0		ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7349243164062	2	516.806465	1031.59838	-0.88819	-0.00045902	3.107	0.0016057	2.2188	0.0011467	516.8071334685236	43.936	0.3096	43.692	43.52	43.829	-0.2444					13	7	2	0	0	0	0.027866	1	4041	4041		52.299	6.3269	1	118440			25613	7533	17667	17705	29515	29515					0.08384214349734975
IIQLCLDLT	9	Unmodified	_IIQLCLDLT_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;ENSG00000153721|ENST00000607772|CNKSR3	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2869262695312	2	516.293911	1030.57327	0.026607	1.3737E-05	1.2325	0.00063632	1.2591	0.00065005	516.2961714252128	49.541	0.44345	49.541	49.324	49.768	0					16	11	2	0	0	0	0.024354	1	5105	5105		57.811	6.4758	1	305790			25614	18817	17668	17706	29516	29516					0.05920438028147146
IIQLKDTY	8	Unmodified	_IIQLKDTY_					0	0	0		ENST00000467726.1_1_7:56154661-56156634:-|nuORF;ENSG00000164776|ENST00000297373|PHKG1;nc|ENSG00000164776|Q16816-2|PHKG1;PHKG1|p.E95K|1|0.31|ENSG00000164776|chr7:56087004-56087004|C/T|missense_variant	ENST00000467726.1_1_7:56154661-56156634:-|nuORF	ENST00000467726.1_1_7:56154661-56156634:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2832336425781	2	497.2844	992.554247	0.16725	8.3171E-05	-3.9086	-0.0019437	-3.7413	-0.0018605	497.2826909892045	81.933	1.2903	81.74	81.419	82.709	-0.19334					41	29	2	0	0	0	0.46709	1	9864	9864		88.643	8.7036	1	1152200			25615	7321	17669	17707	29517	29517					0.057672247287428036
IIQRMLLCP	9	Unmodified	_IIQRMLLCP_					0	0	0		ENST00000328914.4_1_7:4806266-4806500:+|nuORF	ENST00000328914.4_1_7:4806266-4806500:+|nuORF	ENST00000328914.4_1_7:4806266-4806500:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2802124023438	2	543.811748	1085.60894	-0.40872	-0.00022227	2.5941	0.0014107	2.1854	0.0011884	543.8128849703673	61.814	0.80701	61.6	61.125	61.932	-0.21375					58	19	4	0	0	0	0.024412	1	6941	6941		40.573	1.7665	1	1035600			25616	12309	17670	17708	29518	29518					0.06956197004160458
IIQSQERRRTL	11	Unmodified	_IIQSQERRRTL_					0	0	0			REV__ENST00000505904.1_1_3:42700310-42703020:+|nuORF	REV__ENST00000505904.1_1_3:42700310-42703020:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.9427490234375	3	467.275791	1398.80554	0.66804	0.00031216	0.45128	0.00021087	1.1193	0.00052303	467.2761061200682	100.48	0.42867	100.35	100.1	100.53	-0.13364					15	11	2	0	0	0	0.024776	1	12434	12434		18.966	2.4365	1	175800	+		25617	34014	17671	17709	29519	29519					0.12209416423115727
IIQTDGHIY	9	Unmodified	_IIQTDGHIY_					0	0	0		ZNF322|p.I38T|1|0.17|ENSG00000181315|chr6:26638441-26638441|A/G|missense_variant	ZNF322|p.I38T|1|0.17|ENSG00000181315|chr6:26638441-26638441|A/G|missense_variant	ZNF322|p.I38T|1|0.17|ENSG00000181315|chr6:26638441-26638441|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.277099609375	2	530.277106	1058.53966	-0.25058	-0.00013288	-0.24157	-0.0001281	-0.49215	-0.00026097	530.2770694237099	58.744	1.1698	58.562	58.065	59.235	-0.18134					82	28	5	0	0	0	0.17455	1	6455	6455		94.006	3.2298	1	14915000			25618	38185	17672	17710	29520	29520					0.01273152580643
IIRAILRIP	9	Unmodified	_IIRAILRIP_					0	0	0		ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7591552734375	2	532.868769	1063.72298	-0.49338	-0.00026291	0.50269	0.00026787	0.0093127	4.9624E-06	532.8688767553411	58.841	0.34809	58.653	58.471	58.819	-0.18795					15	8	2	0	0	0	0.024541	1	6470	6470		12.959	0.75233	1	153890			25619	9310	17673	17711	29521	29521					0.19367171152930496
IIRAILRIP	9	Unmodified	_IIRAILRIP_					0	0	0		ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.759033203125	2	532.868769	1063.72298	0.35494	0.00018914	-0.39421	-0.00021006	-0.039272	-2.0927E-05	532.8683642435449	58.949	0.3527	58.707	58.502	58.854	-0.24165					15	8	2	0	0	0	0.024541	1	6470	6470		12.207	11.002	1	207460			25620	9310	17673	17711	29522	29522					0.19367171152930496
IIRAILRIP	9	Unmodified	_IIRAILRIP_					0	0	0		ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.868769	1063.72298	1.3214	0.00070414	-2.0666	-0.0011012	-0.74518	-0.00039708	532.8675550892041	59.078	0.28305	58.891	58.793	59.076	-0.18705	0.16607	-0.0020064	NaN	7.6903	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59473			25621	9310	17673	17711							0.19367171152930496
IIREFASDF	9	Unmodified	_IIREFASDF_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2889404296875	2	549.284931	1096.55531	-1.0996	-0.00060398	-3.1685	-0.0017404	-4.2681	-0.0023444	549.2838012142599	93.986	0.82425	93.846	93.266	94.09	-0.13995					26	18	2	0	0	0	0.024477	1	11500	11500		35.618	8.8222	1	227080			25622	2894	17674	17712	29523	29523					0.010894390976545765
IIREFASDF	9	Unmodified	_IIREFASDF_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	549.284931	1096.55531	-0.29264	-0.00016074	-6.6823	-0.0036705	-6.975	-0.0038312	549.2812699624918	94.037	0.8431	94.037	93.73	94.573	0	0.082813	-0.0010318	NaN	35.618	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628700			25623	2894	17674	17712							0.010894390976545765
IIREFASDF	9	Unmodified	_IIREFASDF_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	549.284931	1096.55531	-0.83732	-0.00045993	-3.6038	-0.0019795	-4.4411	-0.0024394	549.2834961632626	93.974	1.0169	93.973	93.33	94.347	-0.00023651	0.018826	0.0023503	NaN	35.618	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630640			25624	2894	17674	17712							0.010894390976545765
IIREFASDF	9	Unmodified	_IIREFASDF_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.284931	1096.55531	-1.1318	-0.00062168	-5.3796	-0.0029549	-6.5114	-0.0035766	549.2818316544605	94.026	0.71719	94.031	93.689	94.406	0.0059814	0.076944	0.0003994	NaN	35.618	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732980			25625	2894	17674	17712							0.010894390976545765
IIREFASDF	9	Unmodified	_IIREFASDF_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.284931	1096.55531	0.20622	0.00011327	-5.4651	-0.0030019	-5.2589	-0.0028886	549.2823084500336	94.007	0.72638	93.885	93.453	94.18	-0.12215	-0.06998	0.00030546	NaN	35.618	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208970			25626	2894	17674	17712							0.010894390976545765
IIREQNNI	8	Unmodified	_IIREQNNI_					0	0	0			REV__ENST00000435000.2_1_1:146523151-146523364:+|nuORF	REV__ENST00000435000.2_1_1:146523151-146523364:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.77288818359375	2	500.282723	998.550893	-1.1732	-0.00058691	-0.48116	-0.00024072	-1.6543	-0.00082763	500.28292306615464	24.968	1.0156	24.934	24.145	25.161	-0.034395					37	22	3	0	0	0	0.027866	1	1091	1091		39.253	0	1	250010	+		25627	32433	17675	17713	29524	29524					0.051559746747557256
IIRFITELN	9	Unmodified	_IIRFITELN_					0	0	0			REV__ENSG00000156194|ENST00000286719|PPEF2	REV__ENSG00000156194|ENST00000286719|PPEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8319702148438	2	559.832049	1117.64954	-0.31677	-0.00017734	0.22238	0.0001245	-0.09439	-5.2842E-05	559.831966398586	78.812	1.3387	78.812	78.531	79.87	0					101	31	4	0	0	0	0.32811	1	9803	9803		71.877	7.6702	1	3102100	+		25628	25058	17676	17714	29525	29525					0.09542577919796713
IIRGETAKAS	10	Unmodified	_IIRGETAKAS_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.94316	1	10418	10418		51.193	5.2407	1	3714800	+		25629	19860	17677	17715	29526	29526					0.07224530363259873
IIRGPEDQTV	10	Unmodified	_IIRGPEDQTV_					0	0	0		ENSG00000106628|ENST00000610533|POLD2	ENSG00000106628|ENST00000610533|POLD2	ENSG00000106628|ENST00000610533|POLD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.26806640625	2	564.306395	1126.59824	-0.2446	-0.00013803	2.4743	0.0013963	2.2297	0.0012583	564.3078096974873	59.986	0.64169	59.738	59.495	60.137	-0.24841					44	16	4	0	0	0	0.03519	1	6626	6626		36.447	0	1	946720			25630	2803	17678	17716	29527	29527					0.04000209155083212
IIRHGAKL	8	Unmodified	_IIRHGAKL_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB;ENSG00000114054|ENST00000251654|PCCB;ENST00000473073.1_1_3:136045962-136048865:+|nuORF	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.26629638671875	2	454.295436	906.57632	1.4	0.00063603	-1.1717	-0.00053231	0.22831	0.00010372	454.2952413880185	63.161	0.17767	63.215	63.09	63.267	0.054104					5	4	2	0	0	0	0.027866	1	7290	7290		60.294	7.9948	1	105420			25631	18185	17679	17717	29528	29528					0.11929493987850037
IIRKESLP	8	Unmodified	_IIRKESLP_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.3003234863281	2	478.300384	954.586216	-0.77628	-0.00037129	-0.11055	-5.2875E-05	-0.88682	-0.00042417	478.3002911219348	37.77	1.786	37.688	37.144	38.93	-0.082516					105	49	4	0	0	0	0.35998	1	3098	3098		102.77	0	1	15242000			25632	18623	17680	17718	29529	29529					0.10710637202555517
IIRLALAET	9	Unmodified	_IIRLALAET_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3006591796875	2	500.313492	998.612431	-0.32	-0.0001601	-0.39418	-0.00019722	-0.71418	-0.00035732	500.3132320698651	32.32	0.69597	32.32	31.91	32.606	0					27	17	2	0	0	0	0.024487	1	2269	2269		17.365	0	1	226850			25633	3299	17681	17719	29530	29530					0.11306906374011305
IIRLLKREEAE	11	Unmodified	_IIRLLKREEAE_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.27734375	3	457.276909	1368.8089	0.47095	0.00021535	-1.7259	-0.00078922	-1.255	-0.00057387	457.27581365687485	103.34	0.66978	103.33	103.1	103.77	-0.0046005					39	15	3	0	0	0	1.0788	1	13184	13184		17.167	1.8293	1	464180	+		25634	22509	17682	17720	29531	29531					0.13924666477169012
IIRLRNKTLTE	11	Unmodified	_IIRLRNKTLTE_					0	0	0		ENSG00000101109|ENST00000372806|STK4;STK4|p.T175Yfs*45|1|0.21|ENSG00000101109|chr20:44987291-44987292|-/T|frameshift_variant;nc|ENSG00000101109|Q13043-2|STK4	ENSG00000101109|ENST00000372806|STK4	ENSG00000101109|ENST00000372806|STK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.2830810546875	3	452.948904	1355.82488	0.24421	0.00011061	-1.1832	-0.00053591	-0.93896	-0.0004253	452.94824343813883	106.29	0.5282	106.16	105.9	106.43	-0.1238					65	22	4	0	0	0	0.024834	1	13220	13220		8.7993	3.6569	1	927680			25635	2281	17683	17721	29532	29532					0.1612037271402187
IIRNVSHVVTQ	11	Unmodified	_IIRNVSHVVTQ_					0	0	0			REV__CON__Q32PI4	REV__CON__Q32PI4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3692016601562	2	633.369861	1264.72517	0.56003	0.00035471	-1.6879	-0.0010691	-1.1279	-0.00071437	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.99553	1	12250	12250		37.812	2.6595	1	8480900	+	+	25636	19581	17684	17722	29533	29533					0.1033955510006308
IIRNVSHVVTQ	11	Unmodified	_IIRNVSHVVTQ_					0	0	0			REV__CON__Q32PI4	REV__CON__Q32PI4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3726806640625	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.9728	1	12010	12010		42.864	5.7052	1	9528000	+	+	25637	19581	17684	17722	29534	29534					0.1033955510006308
IIRNVSHVVTQ	11	Unmodified	_IIRNVSHVVTQ_					0	0	0			REV__CON__Q32PI4	REV__CON__Q32PI4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.370849609375	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.98218	2	12009	11964;12009		40.778	3.639	1	9845500	+	+	25638	19581	17684	17722	29535;29536	29536					0.1033955510006308
IIRPLTVYG	9	Unmodified	_IIRPLTVYG_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.313720703125	2	516.316035	1030.61752	-0.26252	-0.00013554	-4.117	-0.0021257	-4.3795	-0.0022612	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	0.90698	1	12581	12581		31.955	6.3808	1	33267000			25639	3100	17685	17723	29537	29537					0.10343210236624145
IIRQKPVDLL	10	Unmodified	_IIRQKPVDLL_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.8562622070312	2	597.882073	1193.74959	-0.58801	-0.00035156	-0.74599	-0.00044601	-1.334	-0.00079758	597.8826690705831	92.898	0.25345	92.775	92.587	92.84	-0.12242					6	5	2	0	0	0	0.03519	1	11410	11410		27.882	0	1	19580			25640	10069	17686	17724	29538	29538					0.16046815253594104
IIRSQEHQA	9	Unmodified	_IIRSQEHQA_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.745849609375	2	541.291079	1080.56761	-1.0742	-0.00058147	-2.4984	-0.0013524	-3.5726	-0.0019338	541.2895835241941	31.103	0.47267	30.951	30.724	31.197	-0.15231					25	11	3	0	0	0	0.024511	1	2040	2040		40.778	21.418	1	321640	+		25641	25165	17687	17725	29539	29539					0.030544755607252227
IIRSQEHQA	9	Unmodified	_IIRSQEHQA_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.291079	1080.56761	-0.72303	-0.00039137	-2.6925	-0.0014574	-3.4155	-0.0018488	541.2894345556152	31.144	0.51605	30.903	30.669	31.185	-0.24109	-0.01886	0.00015006	NaN	32.812	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277170	+		25642	25165	17687	17725							0.030544755607252227
IIRSQEHQA	9	Unmodified	_IIRSQEHQA_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.291079	1080.56761	-0.7212	-0.00039038	-3.0963	-0.001676	-3.8175	-0.0020664	541.2893423425048	31.096	0.47548	30.911	30.66	31.136	-0.18503	-0.010599	-0.0002871	NaN	32.812	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319870	+		25643	25165	17687	17725							0.030544755607252227
IIRTIVANPL	10	Unmodified	_IIRTIVANPL_					0	0	0			REV__ENST00000479871.1_1_9:116172333-116172573:-|nuORF	REV__ENST00000479871.1_1_9:116172333-116172573:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.3534545898438	2	555.355691	1108.69683	-0.21036	-0.00011683	-3.5972	-0.0019977	-3.8076	-0.0021146	555.353605243723	99.586	0.64217	99.596	99.268	99.91	0.010231					45	14	4	0	0	0	1.0393	1	12696	12696		40.778	0	1	1220000	+		25644	24601	17688	17726	29540	29540					0.14682857190791765
IIRTTRTAS	9	Unmodified	_IIRTTRTAS_					0	0	0		ENST00000469092.5_1_17:72701353-72708973:-|nuORF	ENST00000469092.5_1_17:72701353-72708973:-|nuORF	ENST00000469092.5_1_17:72701353-72708973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.80340576171875	2	509.803823	1017.59309	1.0443	0.00053241	-1.5896	-0.00081041	-0.54531	-0.000278	509.80280499972037	98.265	0.97583	98.141	97.773	98.749	-0.12414					57	23	4	0	0	0	0.89441	1	12157	12157		32.812	7.2384	1	624670			25645	14895	17689	17727	29541	29541					0.08499950083137264
IIRYYYVD	8	Unmodified	_IIRYYYVD_					0	0	0			REV__nc|ENSG00000028116|Q86Y07-4|VRK2	REV__nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.3323364257812	2	552.78985	1103.56515	-0.40089	-0.00022161	0.24682	0.00013644	-0.15407	-8.517E-05	552.7900112156126	95.677	0.65559	95.525	95.186	95.842	-0.15186					32	14	3	0	0	0	0.027866	1	11797	11797		25.45	11.313	1	240460	+		25646	20032	17690	17728	29542	29542					0.01750627103047009
IISENRLVK	9	Unmodified	_IISENRLVK_					0	0	0			REV__CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	REV__CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7733154296875	2	536.329673	1070.64479	-0.50444	-0.00027054	-0.36409	-0.00019527	-0.86853	-0.00046582	536.3293870777886	41.514	0.53142	41.391	41.155	41.687	-0.12317					23	14	2	0	0	0	0.023837	1	3728	3728		30.318	0	1	206650	+		25647	19252	17691	17729	29543	29543					0.11229693777045213
IISGKHSKLE	10	Unmodified	_IISGKHSKLE_					0	0	0			REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.3273315429688	2	556.327131	1110.63971	-0.62395	-0.00034712	0.036444	2.0275E-05	-0.58751	-0.00032685	556.3270126457063	60.24	0.59676	60.04	59.727	60.323	-0.20016					39	15	3	0	0	0	0.80817	1	6890	6890		60.118	10.094	1	1256300	+		25648	28846	17692	17730	29544	29544					0.08881389914427018
IISGMNCN	8	Unmodified	_IISGMNCN_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2461242675781	2	426.191131	850.367709	-0.40822	-0.00017398	1.2866	0.00054834	0.87839	0.00037436	426.19155249795284	89.435	0.5098	89.273	89.092	89.602	-0.1626					19	11	2	0	0	0	0.027866	1	10948	10948		24.203	0	1	79841			25649	1538	17693	17731	29545	29545					-0.06346038702918122
IISGVTKAIS	10	Unmodified	_IISGVTKAIS_					0	0	0		ENSG00000171368|ENST00000360578|TPPP	ENSG00000171368|ENST00000360578|TPPP	ENSG00000171368|ENST00000360578|TPPP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.8065185546875	2	494.8055	987.596446	0.33615	0.00016633	-0.90806	-0.00044931	-0.57191	-0.00028298	494.8049108362055	81.99	1.1587	81.88	81.523	82.682	-0.11006					73	27	4	0	0	0	1.1333	1	10207	10207		28.081	0.19925	1	1738300			25650	8143	17694	17732	29546	29546					0.10215200137145075
IISILLRPA	9	Unmodified	_IISILLRPA_					0	0	0			REV__nc|ENSG00000206531|Q6Q8B3|CD200R1L	REV__nc|ENSG00000206531|Q6Q8B3|CD200R1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3345642089844	2	498.334227	994.653902	2.1217	0.0010573	-2.3014	-0.0011469	-0.17974	-8.9568E-05	498.3330237962994	74.302	0.59526	74.302	73.955	74.551	0					47	13	4	0	0	0	0.33245	1	9095	9095		71.296	2.5089	1	5410200	+		25651	37092	17695	17733	29547	29547					0.15636087133361798
IISILLRPA	9	Unmodified	_IISILLRPA_					0	0	0			REV__nc|ENSG00000206531|Q6Q8B3|CD200R1L	REV__nc|ENSG00000206531|Q6Q8B3|CD200R1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.33465576171875	2	498.334227	994.653902	0.37447	0.00018661	-0.59923	-0.00029862	-0.22476	-0.00011201	498.33387218002036	74.564	0.59087	74.305	73.986	74.577	-0.25887					46	13	4	0	0	0	0.22754	2	9100	9089;9100		85.359	5.9085	1	5843200	+		25652	37092	17695	17733	29548;29549	29549					0.15636087133361798
IISKCLEGMIL	11	Unmodified	_IISKCLEGMIL_					0	0	0		ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L	ENSG00000137942|ENST00000271234|FNBP1L	ENSG00000137942|ENST00000271234|FNBP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.231689453125	3	407.231144	1218.6716	0.32371	0.00013183	-0.089752	-3.655E-05	0.23396	9.5275E-05	407.2311239310656	43.351	0.87174	43.351	43.038	43.91	0					81	23	5	0	0	0	0.94699	2	4047	4047;4059		48.602	0.64203	1	7609100			25653	5177	17696	17734	29550;29551	29550					0.07101298281713753
IISKVFIGL	9	Unmodified	_IISKVFIGL_					0	0	0			REV__NCKAP1-PARD3|1|fusion	REV__NCKAP1-PARD3|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.80657958984375	2	495.323328	988.632104	-0.30362	-0.00015039	-0.26378	-0.00013066	-0.5674	-0.00028105	495.322983125512	81.918	0.49639	81.943	81.819	82.315	0.025711					20	11	2	0	0	0	0.024541	1	10129	10129		24.203	0	1	81057	+		25654	24623	17697	17735	29552	29552					0.13733282384794165
IISKVLKGNIE	11	Unmodified	_IISKVLKGNIE_					0	0	0			REV__nc|ENSG00000153560|Q9NZI7-4|UBP1	REV__nc|ENSG00000153560|Q9NZI7-4|UBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.3766479492188	2	607.379363	1212.74417	0.78357	0.00047592	-4.2023	-0.0025524	-3.4187	-0.0020764	607.3766907188141	97.758	0.66309	97.634	97.285	97.948	-0.12368					27	15	2	0	0	0	1.0392	1	12105	12105		28.081	1.0342	1	325640	+		25655	24906	17698	17736	29553	29553					0.14631091671117247
IISLIWID	8	Unmodified	_IISLIWID_					0	0	0		ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.76141357421875	2	486.791861	971.569169	-0.015155	-7.3772E-06	-4.4301	-0.0021565	-4.4453	-0.0021639	486.78948320232985	63.534	0.79503	63.283	62.935	63.73	-0.25141					38	21	3	0	0	0	0.027866	1	7425	7425		37.028	0	1	750020			25656	9820	17699	17737	29554	29554					0.0822471659673738
IISLIWID	8	Unmodified	_IISLIWID_					0	0	0		ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.791861	971.569169	-0.18436	-8.9744E-05	-4.3469	-0.0021161	-4.5313	-0.0022058	486.78952679565174	63.278	0.76987	63.278	62.896	63.666	0	-0.029012	0.00032574	NaN	28.254	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747320			25657	9820	17699	17737							0.0822471659673738
IISLIWID	8	Unmodified	_IISLIWID_					0	0	0		ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	ENSG00000196099|ENST00000309154|OR6M1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.791861	971.569169	0.90365	0.00043989	-5.3006	-0.0025803	-4.3969	-0.0021404	486.788986464144	63.307	0.68805	63.361	62.974	63.662	0.054104	0.053799	-0.0006027	NaN	28.254	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	831380			25658	9820	17699	17737							0.0822471659673738
IISNIESRA	9	Unmodified	_IISNIESRA_					0	0	0		ENST00000370651.5_1_6:64290507-64290630:+|nuORF	ENST00000370651.5_1_6:64290507-64290630:+|nuORF	ENST00000370651.5_1_6:64290507-64290630:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2860412597656	2	501.782556	1001.55056	0.05526	2.7729E-05	3.2527	0.0016322	3.308	0.0016599	501.7839443871086	63.083	0.88304	62.862	62.489	63.372	-0.22097					49	22	3	0	0	0	0.42604	1	7139	7139		64.207	5.4253	1	2332600			25659	12968	17700	17738	29555	29555					0.049845549548990675
IISRAEKES	9	Unmodified	_IISRAEKES_					0	0	0			REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF;REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2738647460938	2	516.787838	1031.56112	-0.70539	-0.00036454	0.43565	0.00022514	-0.26974	-0.0001394	516.7881723548974	45.657	0.44601	45.701	45.512	45.958	0.043877					25	12	3	0	0	0	0.024374	1	4386	4386		58.782	21.623	1	1152200	+		25660	36760;34550	17701	17739	29556	29556					0.04660537609311177
IISRAEKES	9	Unmodified	_IISRAEKES_					0	0	0			REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF;REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.787838	1031.56112	-0.37999	-0.00019637	-5.2619	-0.0027193	-5.6419	-0.0029157	517.2869220768686	45.525	0.40652	45.425	45.154	45.561	-0.099445	-0.15685	-0.005477	NaN	58.782	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115500	+		25661	36760;34550	17701	17739							0.04660537609311177
IISRKKEA	8	Unmodified	_IISRKKEA_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.L165Ifs*6|1|0.07|ENSG00000162607|chr1:62443254-62443255|-/ATAATAGCACTAAT|frameshift_variant;ENSG00000122970|ENST00000242591|IFT81;nc|ENSG00000122970|Q8WYA0-3|IFT81	ENSG00000162607|ENST00000339950|USP1;ENSG00000122970|ENST00000242591|IFT81	ENSG00000162607|ENST00000339950|USP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.25701904296875	2	472.798009	943.581465	0.79614	0.00037641	4.0754	0.0019268	4.8715	0.0023032	472.79970007383633	74.707	0.45789	74.448	74.285	74.743	-0.25887					16	10	2	0	0	0	0.027866	1	9133	9133		30.504	5.0535	1	135170			25662	6961;3950	17702	17740	29557	29557					0.1074175305980134
IISRQIVLL	9	Unmodified	_IISRQIVLL_					0	0	0		ENSG00000152578|ENST00000282499|GRIA4;nc|ENSG00000152578|P48058-2|GRIA4;ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENSG00000152578|ENST00000282499|GRIA4	ENSG00000152578|ENST00000282499|GRIA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3292236328125	2	527.852784	1053.69102	-0.34719	-0.00018326	0.147	7.7597E-05	-0.20018	-0.00010567	527.852732252532	77.226	1.1257	77.015	76.83	77.956	-0.21087					40	26	2	0	0	0	0.024405	1	9631	9631		35.618	12.576	1	721250			25663	6281	17703	17741	29558	29558					0.1663175867913651
IISSQPTYT	9	Unmodified	_IISSQPTYT_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.35223388671875	2	505.263665	1008.51278	0.067068	3.3887E-05	1.6233	0.00082018	1.6903	0.00085407	505.2645541719219	81.891	1.4923	81.698	81.131	82.623	-0.19333					53	34	3	0	0	0	0.024511	1	9919	9919		40.778	11.629	1	171900	+		25664	21860	17704	17742	29559	29559					0.008860439694331035
IISSQPTYT	9	Unmodified	_IISSQPTYT_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.263665	1008.51278	-0.5143	-0.00025985	2.2557	0.0011397	1.7414	0.00087987	505.26495779700144	81.849	0.94136	81.849	81.464	82.406	0	0.078609	0.00036436	NaN	32.812	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355090	+		25665	21860	17704	17742							0.008860439694331035
IISSQPTYT	9	Unmodified	_IISSQPTYT_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.263665	1008.51278	0.074642	3.7714E-05	1.6111	0.00081401	1.6857	0.00085172	505.26487702601463	81.972	1.0579	81.862	81.278	82.336	-0.11006	0.091525	-0.00028707	NaN	32.812	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411270	+		25666	21860	17704	17742							0.008860439694331035
IISSQPTYT	9	Unmodified	_IISSQPTYT_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.263665	1008.51278	-0.43448	-0.00021953	2.3075	0.0011659	1.873	0.00094638	505.2648954925122	81.799	1.0623	81.825	81.168	82.231	0.025719	0.05394	0.00041674	NaN	32.812	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410580	+		25667	21860	17704	17742							0.008860439694331035
IISSQPTYT	9	Unmodified	_IISSQPTYT_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.263665	1008.51278	0.42229	0.00021337	0.97157	0.0004909	1.3939	0.00070427	505.2642473318318	81.9	0.93286	81.671	81.188	82.121	-0.2289	-0.10004	-0.00093328	NaN	32.812	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164230	+		25668	21860	17704	17742							0.008860439694331035
IISTTHIIVS	10	Unmodified	_IISTTHIIVS_					0	0	0			REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.8114624023438	2	542.324057	1082.63356	-0.3017	-0.00016362	-0.43304	-0.00023485	-0.73474	-0.00039847	542.3239068232721	63.093	0.20463	62.872	62.776	62.98	-0.22097					6	4	2	0	0	0	0.03519	1	7120	7120		35.618	1.4457	1	102590	+		25669	32430	17705	17743	29560	29560					0.09554871682894372
IISVFYTV	8	Unmodified	_IISVFYTV_					0	0	0		ENSG00000197591|ENST00000355784|OR11L1;OR5I1|p.I282V|1|0.28|ENSG00000167825|chr11:55935557-55935557|T/C|missense_variant;OR11L1|p.P283T|1|0.22|ENSG00000197591|chr1:247841050-247841050|G/T|missense_variant;OR11L1|p.P283Q|1|0.22|ENSG00000197591|chr1:247841049-247841049|G/T|missense_variant	ENSG00000197591|ENST00000355784|OR11L1	ENSG00000197591|ENST00000355784|OR11L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7854309082031	2	471.270761	940.52697	0.29477	0.00013892	-3.0398	-0.0014326	-2.7451	-0.0012937	471.26910605652887	54.786	0.44526	54.636	54.375	54.82	-0.15036					20	12	2	0	0	0	0.027866	1	5987	5987		26.796	13.837	1	265020			25670	10020	17706	17744	29561	29561					0.05432741188383261
IISVLAMT	8	Unmodified	_IISVLAMT_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2504577636719	2	424.251514	846.488476	0.10346	4.3893E-05	-2.768	-0.0011743	-2.6646	-0.0011305	424.2503450708961	102.9	3.7499	102.78	100.52	104.27	-0.12783					151	97	3	0	0	0	1.0133	1	12816	12816		35.201	8.4046	1	8549900			25671	8534	17707	17745	29562	29562					0.05909112282199658
IISVLCMVV	9	Unmodified	_IISVLCMVV_					0	0	0			REV__ENSG00000146205|ENST00000674324|ANO7	REV__ENSG00000146205|ENST00000674324|ANO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7832336425781	2	488.782124	975.549696	-0.55166	-0.00026964	-1.3255	-0.00064788	-1.8772	-0.00091752	488.7815236029691	84.83	0.78696	84.757	84.468	85.255	-0.072769					32	18	2	0	0	0	0.024466	1	10663	10663		18.324	0	1	92241	+		25672	24467	17708	17746	29563	29563					0.06094300989991552
IISWMLRTD	9	Unmodified	_IISWMLRTD_					0	0	0		ENST00000568681.1_1_16:30106216-30106402:-|nuORF	ENST00000568681.1_1_16:30106216-30106402:-|nuORF	ENST00000568681.1_1_16:30106216-30106402:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.2831420898438	2	567.802434	1133.59032	-1.0873	-0.00061737	1.6572	0.00094094	0.56988	0.00032358	568.3039470539985	65.574	0.82153	65.36	65.094	65.915	-0.21327					24	19	2	0	0	0	0.024506	1	7459	7459		30.504	4.9296	1	285730			25673	16989	17709	17747	29564	29564					0.02886358633963937
IISYTIEAN	9	Unmodified	_IISYTIEAN_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2703247070312	2	512.27149	1022.52843	-0.20394	-0.00010447	-0.98911	-0.00050669	-1.193	-0.00061116	512.2707861377073	105.96	0.68755	105.96	105.38	106.07	0.00014496					35	23	2	0	0	0	0.72875	1	13507	13507		44.117	6.9577	1	110060	+		25674	20725	17710	17748	29565	29565					0.018063304864767815
IITAFIRAL	9	Unmodified	_IITAFIRAL_					0	0	0		ENST00000473253.5_1_3:174581768-175298945:+|nuORF;ENSG00000177694|ENST00000454872|NAALADL2;ENST00000414826.1_1_3:175177932-175205321:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.3258361816406	2	509.326402	1016.63825	0.64522	0.00032863	-0.9084	-0.00046267	-0.26318	-0.00013404	509.3258623544435	77.782	0.71899	77.54	77.233	77.952	-0.24232					56	16	4	0	0	0	0.29158	1	9257	9257		76.774	25.439	1	6213000			25675	8765	17711	17749	29566	29566					0.13059800616315442
IITAQIIEV	9	Unmodified	_IITAQIIEV_					0	0	0			REV__ENSG00000013364|ENST00000357402|MVP	REV__ENSG00000013364|ENST00000357402|MVP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.6041259765625	2	500.307875	998.601197	-0.73964	-0.00037005	0.46934	0.00023481	-0.2703	-0.00013524	500.30797955194765	56.352	0.70216	56.127	55.842	56.544	-0.22431					40	17	4	0	0	0	0.024405	1	6069	6069		27.882	4.8398	1	1880000	+		25676	19954	17712	17750	29567	29567					0.10184084279910621
IITATENPFS	10	Unmodified	_IITATENPFS_					0	0	0			REV__ENSG00000177707|ENST00000485303|NECTIN3;REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	REV__ENSG00000177707|ENST00000485303|NECTIN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2760009765625	2	546.782222	1091.54989	-0.64092	-0.00035044	-2.2913	-0.0012528	-2.9322	-0.0016033	546.7802462782352	73.41	0.96512	73.22	72.718	73.683	-0.19027					54	20	3	0	0	0	0.79525	1	8605	8605		60.972	10.947	1	8558000	+		25677	27142;36974	17713	17751	29568	29568					0.007777155151643456
IITDHFVVK	9	Unmodified	_IITDHFVVK_					0	0	0		ENSG00000184478|ENST00000641160|OR56A3	ENSG00000184478|ENST00000641160|OR56A3	ENSG00000184478|ENST00000641160|OR56A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.311767578125	2	536.313492	1070.61243	-0.77225	-0.00041417	-2.8828	-0.0015461	-3.6551	-0.0019603	536.3119727707362	97.164	1.1655	97.003	96.595	97.76	-0.16105					58	25	4	0	0	0	0.83071	1	11989	11989		37.159	5.2042	1	651160			25678	9342	17714	17752	29569	29569					0.07994906374028687
IITDVQDM	8	Unmodified	_IITDVQDM_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-5|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.7314758300781	2	467.731143	933.447733	0.088357	4.1327E-05	0.2028	9.4855E-05	0.29116	0.00013618	467.7311157230866	60.365	0.78704	60.168	59.802	60.589	-0.19742					50	19	4	0	0	0	0.44658	1	6716	6716		90.777	3.8421	1	1676600			25679	18160;18161	17715	17753	29570	29570					-0.021652738280636186
IITGQEEGAY	10	Unmodified	_IITGQEEGAY_					0	0	0		ENST00000490659.5_1_10:97583001-97604470:+|nuORF;ENST00000371206.6_1_10:97583001-97605437:+|nuORF;nc|ENSG00000138185|P49961-3|ENTPD1;nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1	ENST00000490659.5_1_10:97583001-97604470:+|nuORF	ENST00000490659.5_1_10:97583001-97604470:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.7650146484375	2	540.764029	1079.5135	-0.2368	-0.00012805	0.8826	0.00047728	0.6458	0.00034922	540.7643940942081	50.096	1.755	49.816	49.397	51.152	-0.27977					119	46	4	0	0	0	0.77808	1	5038	5038		62.107	0	1	11668000			25680	5218	17716	17754	29571	29571					-0.023071613815318415
IITIGHSRLNK	11	Unmodified	_IITIGHSRLNK_					0	0	0		ENSG00000114745|ENST00000319283|GORASP1;ENST00000470910.5_1_3:39142410-39149053:-|nuORF;ENST00000493851.5_1_3:39143979-39149053:-|nuORF;nc|ENSG00000114745|Q9BQQ3-2|GORASP1;ENST00000441302.6_1_3:39142056-39149053:-|nuORF	ENSG00000114745|ENST00000319283|GORASP1	ENSG00000114745|ENST00000319283|GORASP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.3805541992188	2	626.380229	1250.7459	-1.3509	-0.00084619	0.33333	0.00020879	-1.0176	-0.00063739	626.3803519046847	104.49	0.97306	104.36	104.02	105	-0.12928					86	31	4	0	0	0	1.0674	1	12986	12986		22.58	2.5829	1	2188000			25681	3381	17717	17755	29572	29572					0.13056145479754377
IITLGLFF	8	Unmodified	_IITLGLFF_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-6|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-6|CFAP61	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2818298339844	2	462.283672	922.552791	-0.32554	-0.00015049	-3.1578	-0.0014598	-3.4833	-0.0016103	462.2820901838478	75.59	0.72735	75.346	74.997	75.724	-0.24455					43	19	3	0	0	0	1.0574	1	9247	9247		15.636	0	1	1326500	+		25682	36497	17718	17756	29573	29573					0.0884163543065597
IITLRKSSAS	10	Unmodified	_IITLRKSSAS_					0	0	0		ENST00000563675.5_1_16:19421837-19441949:+|nuORF;ENST00000542583.6_1_16:19429386-19441949:+|nuORF;ENST00000541464.5_3_16:19421875-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3271484375	2	538.327131	1074.63971	-0.46158	-0.00024848	0.40604	0.00021858	-0.05554	-2.9899E-05	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.94316	1	12681	12681		51.193	1.7511	1	22988000			25683	16437	17719	17757	29574	29574					0.10537389914406958
IITLRKSSAS	10	Unmodified	_IITLRKSSAS_					0	0	0		ENST00000563675.5_1_16:19421837-19441949:+|nuORF;ENST00000542583.6_1_16:19429386-19441949:+|nuORF;ENST00000541464.5_3_16:19421875-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3272094726562	2	538.327131	1074.63971	-0.33931	-0.00018266	0.2096	0.00011283	-0.12971	-6.9824E-05	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	1.0992	2	12669	12669;12681		32.812	0.85756	1	22353000			25684	16437	17719	17757	29575;29576	29575					0.10537389914406958
IITLRKSSAS	10	Unmodified	_IITLRKSSAS_					0	0	0		ENST00000563675.5_1_16:19421837-19441949:+|nuORF;ENST00000542583.6_1_16:19429386-19441949:+|nuORF;ENST00000541464.5_3_16:19421875-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3262939453125	2	538.327131	1074.63971	0.30756	0.00016557	-0.34471	-0.00018557	-0.037144	-1.9996E-05	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.88978	1	12406	12406		54.722	1.3709	1	21168000			25685	16437	17719	17757	29577	29577					0.10537389914406958
IITLRKSSAS	10	Unmodified	_IITLRKSSAS_					0	0	0		ENST00000563675.5_1_16:19421837-19441949:+|nuORF;ENST00000542583.6_1_16:19429386-19441949:+|nuORF;ENST00000541464.5_3_16:19421875-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3272705078125	2	538.327131	1074.63971	0.47679	0.00025667	-0.59753	-0.00032167	-0.12074	-6.4998E-05	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	1.0616	2	12372	12354;12372		37.812	6.2817	1	21461000			25686	16437	17719	17757	29578;29579	29579					0.10537389914406958
IITLRKSSAS	10	Unmodified	_IITLRKSSAS_					0	0	0		ENST00000563675.5_1_16:19421837-19441949:+|nuORF;ENST00000542583.6_1_16:19429386-19441949:+|nuORF;ENST00000541464.5_3_16:19421875-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	ENST00000563675.5_1_16:19421837-19441949:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3272705078125	2	538.327131	1074.63971	-0.74783	-0.00040258	0.59758	0.00032169	-0.15025	-8.0886E-05	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.0616	2	12406	12406;12438		37.812	5.8567	1	21993000			25687	16437	17719	17757	29580;29581	29580					0.10537389914406958
IITLTLLDP	9	Unmodified	_IITLTLLDP_					0	0	0		ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.3239440917969	2	499.810251	997.605948	0.068393	3.4183E-05	2.6604	0.0013297	2.7288	0.0013639	500.3148792158365	64.044	0.21607	63.793	63.659	63.875	-0.25141					8	5	2	0	0	0	0.024294	1	7482	7482		55.504	28.708	1	143390			25688	8911	17720	17758	29582	29582					0.10704968422658112
IITLWIYPQRL	11	Unmodified	_IITLWIYPQRL_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MSMS	OPSCC_40_ClassI_Rep-1	4	472.6174621582031	3	472.618495	1414.83366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.56	1	100.43	99.93	100.93	-0.13364								0	0	0	1.4277	1	12473	12473		19.263	2.7328	1		+		25689	20687	17721	17759	29583	29583					0.14283346350498505
IITQNMFC	8	Unmodified	_IITQNMFC_					0	0	0		ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7455749511719	2	485.230256	968.445959	-0.12097	-5.8697E-05	-0.23261	-0.00011287	-0.35358	-0.00017157	485.22982936895596	62.412	0.31211	62.154	61.977	62.289	-0.25824					11	7	2	0	0	0	0.027866	1	7014	7014		40.573	5.3719	1	94480			25690	4184	17722	17760	29584	29584					-0.039526061176729854
IITRGEGE	8	Unmodified	_IITRGEGE_					0	0	0			REV__nc|ENSG00000152894|Q15262|PTPRK	REV__nc|ENSG00000152894|Q15262|PTPRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.881591796875	2	437.735074	873.455596	-0.73389	-0.00032125	-2.5628	-0.0011218	-3.2966	-0.0014431	437.73379194768313	39.477	0.10713	39.378	39.304	39.411	-0.098751					4	2	2	0	0	0	0.027866	1	3379	3379		31.955	1.4512	1	64127	+		25691	24868	17723	17761	29585	29585					0.013806214837245534
IITSPAYSY	9	Unmodified	_IITSPAYSY_					0	0	0		CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.8134460449219	2	507.760758	1013.50696	-0.24183	-0.00012279	-1.4584	-0.00074053	-1.7003	-0.00086332	507.760107920428	93.166	0.37939	93.174	92.971	93.35	0.0077286					13	8	2	0	0	0	0.023775	1	11760	11760		57.811	0	1	71813			25692	606	17724	17762	29586	29586					0.0007494545775443839
IITTTNLHPV	10	Unmodified	_IITTTNLHPV_					0	0	0		ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7986450195312	2	554.821681	1107.62881	-0.18677	-0.00010362	-0.56986	-0.00031617	-0.75663	-0.00041979	554.8211157571235	21.809	0.38654	21.618	21.372	21.758	-0.19072					13	7	2	0	0	0	0.03519	1	695	695		25.574	1.0549	1	43292			25693	2793	17725	17763	29587	29587					0.0792998754011478
IITVYCIEL	9	Unmodified	_IITVYCIEL_					0	0	0			REV__nc|ENSG00000174970|Q8NH19|OR10AG1	REV__nc|ENSG00000174970|Q8NH19|OR10AG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7957153320312	2	533.796286	1065.57802	-0.73079	-0.00039009	-3.5435	-0.0018915	-4.2743	-0.0022816	533.7940691638897	91.337	1.8182	91.325	90.993	92.811	-0.012383					98	43	5	0	0	0	0.17455	1	11554	11554		94.006	3.2298	1	3948500	+		25694	26910	17726	17764	29588	29588					0.047853221709146965
IITYILNHS	9	Unmodified	_IITYILNHS_					0	0	0		nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.757080078125	2	537.303124	1072.5917	-1.1948	-0.000642	-2.7623	-0.0014842	-3.9571	-0.0021262	537.301598314822	38.073	0.36797	37.851	37.686	38.054	-0.22148					23	10	3	0	0	0	0.024539	1	3136	3136		14.865	0	1	787360			25695	954	17727	17765	29589	29589					0.058303159943761784
IIVAGYALAL	10	Unmodified	_IIVAGYALAL_					0	0	0			REV__ENSG00000164128|ENST00000296533|NPY1R	REV__ENSG00000164128|ENST00000296533|NPY1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.79315185546875	2	502.312961	1002.61137	-0.05672	-2.8491E-05	-2.1585	-0.0010842	-2.2152	-0.0011127	502.3117861165374	64.38	0.31201	64.184	63.958	64.27	-0.19579					9	7	2	0	0	0	0.03519	1	7303	7303		19.36	1.995	1	60972	+		25696	25702	17728	17766	29590	29590					0.11016692005114237
IIVALGILFA	10	Unmodified	_IIVALGILFA_					0	0	0			REV__ENSG00000165102|ENST00000379644|HGSNAT	REV__ENSG00000165102|ENST00000379644|HGSNAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.25	2	515.338978	1028.6634	-1.1436	-0.00058936	-3.1727	-0.001635	-4.3164	-0.0022244	515.3372090729592	30.447	0.66435	30.521	30.296	30.96	0.074314					37	15	4	0	0	0	0.03519	1	1892	1892		12.959	0	1	546560	+		25697	25838	17729	17767	29591	29591					0.15021855418899577
IIVALKSE	8	Unmodified	_IIVALKSE_					0	0	0		nc|ENSG00000171302|Q8WVQ1-3|CANT1;ENSG00000171302|ENST00000392446|CANT1	nc|ENSG00000171302|Q8WVQ1-3|CANT1	nc|ENSG00000171302|Q8WVQ1-3|CANT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7747802734375	2	436.776211	871.537869	-0.42442	-0.00018538	-2.8951	-0.0012645	-3.3196	-0.0014499	436.77487826052743	90.03	2.3328	90.03	89.44	91.772	0					165	55	5	0	0	0	1.0239	1	11349	11349		33.516	5.2613	1	38190000			25698	8137	17730	17768	29592	29592					0.09696143562666748
IIVALKSE	8	Unmodified	_IIVALKSE_					0	0	0		nc|ENSG00000171302|Q8WVQ1-3|CANT1;ENSG00000171302|ENST00000392446|CANT1	nc|ENSG00000171302|Q8WVQ1-3|CANT1	nc|ENSG00000171302|Q8WVQ1-3|CANT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.77484130859375	2	436.776211	871.537869	0.53541	0.00023385	-3.9142	-0.0017096	-3.3788	-0.0014758	436.77442646981	90.011	2.1118	90.025	89.55	91.662	0.013443					149	50	5	0	0	0	1.0133	1	11326	11326		35.201	1.6851	1	34213000			25699	8137	17730	17768	29593	29593					0.09696143562666748
IIVALMARA	9	Unmodified	_IIVALMARA_					0	0	0		nc|ENSG00000148459|Q5T2R2-2|PDSS1;nc|ENSG00000148459|Q5T2R2-3|PDSS1;ENSG00000148459|ENST00000376215|PDSS1;ENST00000473224.1_1_10:26994293-27009094:+|nuORF	nc|ENSG00000148459|Q5T2R2-2|PDSS1	nc|ENSG00000148459|Q5T2R2-2|PDSS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2969055175781	2	479.29933	956.584108	0.85284	0.00040877	-4.0459	-0.0019392	-3.1931	-0.0015304	479.29716956746876	69.973	1.4403	69.973	69.547	70.987	0					69	38	4	0	0	0	0.75282	1	8453	8453		42.474	7.2737	1	6097800			25700	6031	17731	17769	29594	29594					0.10407885193103539
IIVDPLLIV	9	Unmodified	_IIVDPLLIV_					0	0	0		ENSG00000167360|ENST00000300778|OR51Q1	ENSG00000167360|ENST00000300778|OR51Q1	ENSG00000167360|ENST00000300778|OR51Q1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.8316955566406	2	497.830986	993.647419	0.63692	0.00031708	-0.17385	-8.6546E-05	0.46307	0.00023053	497.83050855377445	105.3	1.056	105.3	104.95	106.01	0					70	32	3	0	0	0	0.90698	1	13538	13538		31.955	0	1	1020000			25701	7676	17732	17770	29595	29595					0.15034149181997236
IIVEGRIFKAH	11	Unmodified	_IIVEGRIFKAH_					0	0	0		ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.88330078125	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	0.98904	1	11747	11747		39.253	11.171	1	3558500			25702	11019	17733	17771	29596	29596					0.12613333485137446
IIVEIPSQS	9	Unmodified	_IIVEIPSQS_					0	0	0			REV__ENST00000493650.5_1_13:113841524-113841620:-|nuORF	REV__ENST00000493650.5_1_13:113841524-113841620:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2875061035156	2	493.281857	984.549162	-0.80407	-0.00039663	0.0056029	2.7638E-06	-0.79847	-0.00039387	493.28167392651505	75.485	1.0476	75.485	74.796	75.844	0					47	27	3	0	0	0	0.024457	1	9329	9329		37.159	15.199	1	909510	+		25703	33769	17734	17772	29597	29597					0.056269208661547054
IIVERLLAIN	10	Unmodified	_IIVERLLAIN_					0	0	0			REV__nc|ENSG00000175198|P05165-3|PCCA	REV__nc|ENSG00000175198|P05165-3|PCCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3640747070312	2	577.368798	1152.72304	-0.040808	-2.3561E-05	-3.8221	-0.0022067	-3.8629	-0.0022303	577.3664534876788	101.22	0.73849	101.09	100.81	101.55	-0.12576					52	16	4	0	0	0	1.1329	1	12607	12607		27.882	1.1893	1	981470	+		25704	26926	17735	17773	29598	29598					0.1527912636227029
IIVGGCFDKG	10	Unmodified	_IIVGGCFDKG_					0	0	0			REV__ENSG00000126231|ENST00000375547|PROZ	REV__ENSG00000126231|ENST00000375547|PROZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32269287109375	2	504.762778	1007.511	-0.053468	-2.6989E-05	1.5717	0.00079336	1.5183	0.00076637	504.7623383071745	79.459	0.4883	79.477	79.07	79.558	0.018677					16	11	2	0	0	0	0.03519	1	9790	9790		49.442	0	1	38194	+		25705	22883	17736	17774	29599	29599					0.007547116798264142
IIVIDGVN	8	Unmodified	_IIVIDGVN_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	421.7513427734375	2	421.752736	841.490919	0.25014	0.0001055	-2.7743	-0.0011701	-2.5242	-0.0010646	421.75148543247883	89.78	1.1148	89.758	89.409	90.524	-0.021645					56	26	3	0	0	0	1.043	1	11299	11299		30.504	7.4612	1	999390	+		25706	36629	17737	17775	29600	29600					0.06383284011531032
IIVKELTG	8	Unmodified	_IIVKELTG_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.77490234375	2	436.776211	871.537869	0.53541	0.00023385	-3.9142	-0.0017096	-3.3788	-0.0014758	436.77442646981	90.011	2.1118	90.025	89.55	91.662	0.013443					149	50	5	0	0	0	1.0239	1	11338	11338		33.516	0	1	34213000			25707	3189	17738	17776	29601	29601					0.0969614356265538
IIVKELTG	8	Unmodified	_IIVKELTG_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.77484130859375	2	436.776211	871.537869	-0.55494	-0.00024239	-2.6294	-0.0011485	-3.1844	-0.0013909	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	1.0239	1	11014	11014		33.516	0	1	24367000			25708	3189	17738	17776	29602	29602					0.0969614356265538
IIVKGKKLPSD	11	Unmodified	_IIVKGKKLPSD_					0	0	0		PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant;nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.3795166015625	2	599.381906	1196.74926	0.054084	3.2417E-05	-3.2712	-0.0019607	-3.2171	-0.0019283	599.3798319820231	102.48	0.58797	102.31	102.05	102.64	-0.17178					47	13	5	0	0	0	1.0557	1	12752	12752		23.523	1.8369	1	851410			25709	3498	17739	17777	29603	29603					0.15875395533748815
IIVMNLQL	8	Unmodified	_IIVMNLQL_					0	0	0			REV__ENST00000486076.5_1_1:151060979-151062981:+|nuORF	REV__ENST00000486076.5_1_1:151060979-151062981:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.77703857421875	2	472.285889	942.557224	-0.59509	-0.00028105	1.4223	0.00067173	0.82721	0.00039068	472.2867070088545	28.86	0.97228	28.71	28.324	29.296	-0.14952					60	22	4	0	0	0	0.027866	1	1717	1717		35.201	12.158	1	941520	+		25710	32904	17740	17778	29604	29604					0.08364776581913702
IIVNESVDAE	10	Unmodified	_IIVNESVDAE_					0	0	0			REV__ENSG00000067646|ENST00000155093|ZFY	REV__ENSG00000067646|ENST00000155093|ZFY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3168334960938	2	544.777136	1087.53972	-0.24562	-0.00013381	-0.42455	-0.00023128	-0.67017	-0.00036509	545.2785533410757	90.799	0.29249	90.66	90.492	90.785	-0.13876					9	6	2	0	0	0	0.03519	1	11103	11103		23.523	0	1	87089	+		25711	20363	17741	17779	29605	29605					-0.0005489221005063882
IIVNRALYT	9	Unmodified	_IIVNRALYT_					0	0	0			REV__ENSG00000155897|ENST00000286355|ADCY8	REV__ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8170166015625	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.92825	1	11037	11037		30.504	1.3541	1	3741200	+		25712	25036	17742	17780	29606	29606					0.09498308748334239
IIVPDMETY	9	Oxidation (M)	_IIVPDM(Oxidation (M))ETY_		IIVPDM(1)ETY		IIVPDM(48)ETY	0	0	1			REV__nc|ENSG00000100883|P61011-2|SRP54	REV__nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.7673950195312	2	548.765183	1095.51581	-0.61049	-0.00033502	3.6336	0.001994	3.0231	0.001659	548.7671993191342	31.915	1.0325	31.758	31.451	32.484	-0.15772					77	24	5	0	0	0	0.67308	1	2179	2179		47.916	6.489	1	7366700	+		25713	21158	17743	17781	29607	29607		650			-0.028124489680521947
IIVSAIPQFP	10	Unmodified	_IIVSAIPQFP_					0	0	0			REV__nc|ENSG00000169379|Q3SXY8-2|ARL13B	REV__nc|ENSG00000169379|Q3SXY8-2|ARL13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7760620117188	2	542.823692	1083.63283	-0.24025	-0.00013041	-3.9936	-0.0021678	-4.2338	-0.0022982	542.8216302835932	67.745	0.49727	67.745	67.528	68.026	0					22	12	2	0	0	0	0.03519	1	8112	8112		68.787	3.3214	1	665840	+		25714	26362	17744	17782	29608	29608					0.09436077033865331
IIVSEVQFV	9	Unmodified	_IIVSEVQFV_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-6|BRF1;nc|ENSG00000185024|Q92994-4|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.3003540039062	2	517.30005	1032.58555	-0.27569	-0.00014261	0.67353	0.00034842	0.39784	0.0002058	517.3002761995172	93.484	0.50684	93.484	93.051	93.558	0					28	11	3	0	0	0	0.22754	1	11856	11856		85.359	0	1	2210700			25715	9400	17745	17783	29609	29609					0.07055797762859584
IIVSEVQFV	9	Unmodified	_IIVSEVQFV_					0	0	0		nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-6|BRF1;nc|ENSG00000185024|Q92994-4|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	nc|ENSG00000185024|Q92994-5|BRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2999267578125	2	517.30005	1032.58555	-0.52365	-0.00027088	0.92174	0.00047681	0.39809	0.00020593	517.30034210507	93.45	0.76209	93.446	92.776	93.538	-0.0041962					32	17	3	0	0	0	0.11092	1	11824	11824		108.09	5.3142	1	2867400			25716	9400	17745	17783	29610	29610					0.07055797762859584
IIVSFDVGGSI	11	Unmodified	_IIVSFDVGGSI_					0	0	0			REV__WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	REV__WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.808239	1105.60193	-0.34246	-0.00018966	-0.36587	-0.00020262	-0.70833	-0.00039228	553.807829601442	88.017	0.46537	87.838	87.616	88.082	-0.17875					25	11	3	0	0	0	0.024759	1	10678	10678		26.693	0	1	335730	+		25717	20904	17746	17784	29611	29611					0.05334878928965736
IIVSHIHVIRV	11	Unmodified	_IIVSHIHVIRV_					0	0	0			REV__nc|ENSG00000185515|P46736-5|BRCC3	REV__nc|ENSG00000185515|P46736-5|BRCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	643.4037475585938	2	643.408789	1284.80303	-1.6875	-0.0010858	-2.0974	-0.0013495	-3.7849	-0.0024352	643.4079123955756	104.44	0.95735	104.31	103.65	104.61	-0.12561					46	24	3	0	0	0	1.0392	1	13009	13009		28.081	1.3886	1	373140	+		25718	27769	17747	17785	29612	29612					0.1720161275609371
IIVSHLSK	8	Unmodified	_IIVSHLSK_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7836608886719	2	448.781828	895.549102	0.32739	0.00014693	3.9618	0.001778	4.2892	0.0019249	448.7835949324866	101.07	0.77135	101.06	100.76	101.53	-0.0054474					39	17	4	0	0	0	0.96769	1	12872	12872		42.396	1.618	1	402600	+		25719	24824	17748	17786	29613	29613					0.09714965656803543
IIVSTTLLP	9	Unmodified	_IIVSTTLLP_					0	0	0			REV__GALNT3|p.P185L|1|0.53|ENSG00000115339|chr2:165765018-165765018|G/A|missense_variant	REV__GALNT3|p.P185L|1|0.53|ENSG00000115339|chr2:165765018-165765018|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7357177734375	2	478.804968	955.595384	-0.88788	-0.00042512	2.5931	0.0012416	1.7052	0.00081646	478.80596870447425	60.482	0.48281	60.306	60.076	60.559	-0.1761					24	11	3	0	0	0	0.024506	1	6716	6716		16.473	4.2663	1	355280	+		25720	36059	17749	17787	29614	29614					0.11580985768239316
IIVVGAPGEG	10	Unmodified	_IIVVGAPGEG_					0	0	0		ENSG00000142409|ENST00000610935|ZNF787	ENSG00000142409|ENST00000610935|ZNF787	ENSG00000142409|ENST00000610935|ZNF787	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7972412109375	2	456.263468	910.512382	-0.71702	-0.00032715	1.0713	0.00048879	0.35426	0.00016163	456.2638933035135	64.656	0.89908	64.393	64.012	64.911	-0.2626					54	23	3	0	0	0	0.03519	1	7664	7664		35.618	11.416	1	715790			25721	5558	17750	17788	29615	29615					0.05354669040241333
IIVVKSTTL	9	Unmodified	_IIVVKSTTL_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79229736328125	2	487.318243	972.621933	0.11885	5.792E-05	-0.49869	-0.00024302	-0.37983	-0.0001851	487.3179306091347	78.543	1.6209	78.351	78.096	79.717	-0.19211					78	38	3	0	0	0	0.024323	1	9719	9719		53.351	0	1	661020	+		25722	23910	17751	17789	29616	29616					0.13452674659572494
IIVVQCGRKLL	11	Unmodified	_IIVVQCGRKLL_					0	0	0			REV__nc|ENSG00000171174|Q9H477-2|RBKS	REV__nc|ENSG00000171174|Q9H477-2|RBKS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.3935546875	2	621.391751	1240.76895	-0.62674	-0.00038945	2.6511	0.0016474	2.0244	0.0012579	621.3932608145468	103.28	0.71376	103.28	102.92	103.63	0					43	16	4	0	0	0	1.0399	1	13258	13258		27.882	2.3082	1	556010	+		25723	26550	17752	17790	29617	29617					0.1581944827287316
IIVVYNLPL	9	Unmodified	_IIVVYNLPL_					0	0	0		ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2720336914062	2	522.328611	1042.64267	-0.19048	-9.9492E-05	2.3485	0.0012267	2.158	0.0011272	522.330013747535	42.409	0.28141	42.435	42.323	42.605	0.026012					10	7	2	0	0	0	0.024487	1	3824	3824		40.573	13.777	1	82362			25724	11587	17753	17791	29618	29618					0.12305265039231017
IIVYEEKT	8	Unmodified	_IIVYEEKT_					0	0	0		FAM111B|p.Q323Pfs*11|1|0.07|ENSG00000189057|chr11:59125065-59125069|AAATT/-|frameshift_variant;nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	FAM111B|p.Q323Pfs*11|1|0.07|ENSG00000189057|chr11:59125065-59125069|AAATT/-|frameshift_variant	FAM111B|p.Q323Pfs*11|1|0.07|ENSG00000189057|chr11:59125065-59125069|AAATT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7717590332031	2	497.776408	993.538263	-0.43049	-0.00021429	-2.5569	-0.0012728	-2.9874	-0.001487	497.7749810014021	29.016	0.56304	28.843	28.507	29.07	-0.17258					20	12	2	0	0	0	0.027866	1	1698	1698		8.2313	0	1	430420			25725	9784	17754	17792	29619	29619					0.04123518491860523
IIVYFTGT	8	Unmodified	_IIVYFTGT_					0	0	0		CAPN6|p.D188Y|1|0.68|ENSG00000077274|chrX:111252444-111252444|C/A|missense_variant	CAPN6|p.D188Y|1|0.68|ENSG00000077274|chrX:111252444-111252444|C/A|missense_variant	CAPN6|p.D188Y|1|0.68|ENSG00000077274|chrX:111252444-111252444|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.75396728515625	2	457.255111	912.49567	0.36754	0.00016806	4.4335	0.0020272	4.801	0.0021953	457.2571043862817	32.629	0.75782	32.437	31.899	32.657	-0.19261					33	17	3	0	0	0	0.027866	1	2269	2269		44.531	3.7529	1	831150			25726	214	17755	17793	29620	29620					0.03592168154295905
IIWDAHPL	8	Unmodified	_IIWDAHPL_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.6464538574219	2	482.766178	963.517802	0.25811	0.00012461	3.8127	0.0018406	4.0708	0.0019652	482.76840981856174	46.855	0.62769	46.855	46.412	47.04	0					21	16	2	0	0	0	0.027866	1	4675	4675		13.775	0	1	211070	+		25727	19822	17756	17794	29621	29621					0.034583926226900985
IIWEQAKV	8	Unmodified	_IIWEQAKV_					0	0	0		nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;nc|ENSG00000138750|Q7Z3B4-2|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7801513671875	2	493.78711	985.559667	-0.60957	-0.000301	-3.6417	-0.0017982	-4.2513	-0.0020992	493.7837798251549	58.236	1.518	58.061	57.788	59.306	-0.1749					61	41	3	0	0	0	0.33369	1	6610	6610		106.42	21.254	1	19482000			25728	5276	17757	17795	29622	29622					0.06630948311226348
IIWSKLIL	8	Unmodified	_IIWSKLIL_					0	0	0			REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3057556152344	2	493.325871	984.637189	0.019995	9.8641E-06	-1.2104	-0.00059712	-1.1904	-0.00058726	493.3254460731856	85.262	0.28325	85.067	84.888	85.172	-0.19508					11	6	2	0	0	0	0.027866	1	10333	10333		50.025	14.406	1	66815	+		25729	34713	17758	17796	29623	29623					0.14425586247421052
IIYFILYG	8	Unmodified	_IIYFILYG_					0	0	0			REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2892150878906	2	501.288954	1000.56336	-0.20958	-0.00010506	3.4413	0.0017251	3.2317	0.00162	501.2904390152303	88.357	2.0156	88.219	87.862	89.877	-0.13744					89	47	3	0	0	0	1.0241	1	10779	10779		33.493	0.68056	1	1494100	+		25730	19248	17759	17797	29624	29624					0.06309618085094826
IIYKELSKID	10	Unmodified	_IIYKELSKID_					0	0	0			REV__IPPK-IARS|1|fusion	REV__IPPK-IARS|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.354248046875	2	611.358096	1220.70164	-1.2666	-0.00077434	-2.1002	-0.001284	-3.3668	-0.0020583	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.0508	1	11646	11646		39.253	8.9351	1	3820300	+		25731	28161	17760	17798	29625	29625					0.10011696542892423
IIYLFKISL	9	Unmodified	_IIYLFKISL_					0	0	0		ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.3531494140625	2	555.352086	1108.68962	0.4637	0.00025752	1.9279	0.0010707	2.3916	0.0013282	555.3530876150478	99.618	0.75595	99.618	99.224	99.98	0					46	17	4	0	0	0	0.97516	1	12747	12747		25.45	0	1	1104100			25732	17477	17761	17799	29626	29626					0.13962124590375424
IIYLKVSLE	9	Unmodified	_IIYLKVSLE_					0	0	0		ENST00000468445.1_1_7:95216267-95216813:-|nuORF	ENST00000468445.1_1_7:95216267-95216813:-|nuORF	ENST00000468445.1_1_7:95216267-95216813:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.3280639648438	2	539.33135	1076.64815	-0.63484	-0.00034239	-0.46281	-0.00024961	-1.0977	-0.000592	539.3308416657255	106.89	0.33409	106.89	106.73	107.06	0.0018387					19	10	3	0	0	0	0.94809	1	13653	13653		29.15	2.4566	1	145220			25733	14871	17762	17800	29627	29627					0.11288943831050346
IIYLTATG	8	Unmodified	_IIYLTATG_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.246337890625	2	426.247286	850.48002	0.80944	0.00034502	-3.6413	-0.0015521	-2.8319	-0.0012071	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	1.0133	1	10537	10537		35.201	6.9464	1	12732000			25734	9042	17763	17801	29628	29628					0.04879881637248218
IIYSIPRY	8	Unmodified	_IIYSIPRY_					0	0	0		nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE	nc|ENSG00000274391|P56180-4|TPTE	nc|ENSG00000274391|P56180-4|TPTE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2536010742188	2	512.794935	1023.57532	-0.42464	-0.00021776	0.10463	5.3653E-05	-0.32001	-0.0001641	513.2975906664468	54.739	0.19056	54.593	54.495	54.686	-0.14609					7	4	2	0	0	0	0.027866	1	5831	5831		33.516	6.7195	1	56505			25735	11028	17764	17802	29629	29629					0.06447234828260662
IIYVVIAP	8	Unmodified	_IIYVVIAP_					0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.2923583984375	2	444.283672	886.552791	-0.63992	-0.0002843	-3.9292	-0.0017457	-4.5691	-0.00203	444.28186670607687	28.066	0.65174	27.821	27.55	28.202	-0.24524					22	15	2	0	0	0	0.027866	1	1633	1633		16.705	0	1	218880	+		25736	21741	17765	17803	29630	29630					0.10497635430647279
IIYVVIAP	8	Unmodified	_IIYVVIAP_					0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.29217529296875	2	444.283672	886.552791	-0.85598	-0.0003803	-3.2924	-0.0014628	-4.1484	-0.0018431	444.2820554511685	27.876	0.60538	27.707	27.402	28.008	-0.16816					29	14	3	0	0	0	0.027866	1	1602	1602		43.626	0	1	346060	+		25737	21741	17765	17803	29631	29631					0.10497635430647279
IIYVYKIGE	9	Unmodified	_IIYVYKIGE_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.3176879882812	2	549.3157	1096.61685	-0.14116	-7.7542E-05	4.1052	0.002255	3.964	0.0021775	549.3178899882961	99.835	0.49946	99.664	99.361	99.861	-0.17088					45	13	4	0	0	0	0.85329	1	12355	12355		35.618	6.4687	1	420940			25738	5189	17766	17804	29632	29632					0.07240370796944262
IIYVYKIGE	9	Unmodified	_IIYVYKIGE_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	549.3157	1096.61685	0.027734	1.5235E-05	3.7169	0.0020417	3.7446	0.002057	549.3177491805235	99.653	0.69202	99.653	99.179	99.871	0	0.018134	-9.7614E-05	NaN	35.618	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438170			25739	5189	17766	17804							0.07240370796944262
IIYWCLNI	8	Unmodified	_IIYWCLNI_					0	0	0			REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7879028320312	2	519.278063	1036.54157	-0.60354	-0.00031341	-2.014	-0.0010458	-2.6175	-0.0013592	519.7779005062563	53.277	0.75409	53.277	52.864	53.618	0					51	20	4	0	0	0	0.027866	1	5794	5794		21.702	0	1	565910	+		25740	33401	17767	17805	29633	29633					0.024764900648506227
IIYYFREY	8	Unmodified	_IIYYFREY_					0	0	0		nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000204403|Q6UXS9|CASP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.274658203125	2	583.797675	1165.5808	-0.28138	-0.00016427	-0.24419	-0.00014256	-0.52558	-0.00030683	583.7974127927885	49.61	1.6134	49.429	48.668	50.282	-0.18071					94	42	3	0	0	0	0.027866	1	4963	4963		40.573	0	1	858720			25741	18660	17768	17806	29634	29634					0.0046291362009469594
IKAARLLLS	9	Unmodified	_IKAARLLLS_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.78485107421875	2	492.831852	983.649151	-0.39432	-0.00019433	-4.3058	-0.002122	-4.7001	-0.0023163	492.8303647236291	46.756	0.25242	46.66	46.572	46.825	-0.096649					8	6	2	0	0	0	0.024539	1	4540	4540		27.882	13.218	1	61115			25742	3729	17769	17807	29635	29635					0.1566720299060762
IKAAVYKEDPA	11	Unmodified	_IKAAVYKEDPA_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.22198486328125	3	402.223923	1203.64994	0.43076	0.00017326	-3.3342	-0.0013411	-2.9034	-0.0011678	402.22256751777644	24.612	0.72075	24.397	23.999	24.72	-0.2151					50	15	5	0	0	0	0.95911	1	1106	1106		45.908	9.5905	1	910620	+		25743	23814	17770	17808	29636	29636					0.05625952849004534
IKAAVYKEDPA	11	Unmodified	_IKAAVYKEDPA_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	402.223923	1203.64994	1.7737	0.00071343	-4.5909	-0.0018466	-2.8172	-0.0011331	402.2220896849791	24.46	0.83171	24.279	23.715	24.547	-0.18089	-0.016781	-0.00083862	NaN	45.908	45	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	962490	+		25744	23814	17770	17808							0.05625952849004534
IKAAYVKNN	9	Unmodified	_IKAAYVKNN_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.8443603515625	2	510.795466	1019.57638	-1.2905	-0.0006592	4.133	0.0021111	2.8425	0.0014519	510.7974663293513	75.357	0.95631	75.357	75.076	76.032	0					47	25	3	0	0	0	0.024381	1	9335	9335		29.15	0	1	471180	+		25745	24419	17771	17809	29637	29637					0.06737449197180467
IKADLSNSLY	10	Unmodified	_IKADLSNSLY_					0	0	0		ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2808227539062	2	562.303321	1122.59209	-0.28496	-0.00016023	-0.92697	-0.00052124	-1.2119	-0.00068147	562.3026227877506	62.291	0.58782	62.077	61.774	62.362	-0.21375					41	14	5	0	0	0	0.03519	1	7004	7004		22.58	4.3176	1	1654700			25746	1628	17772	17810	29638	29638					0.035696909235639396
IKAEERNST	9	Unmodified	_IKAEERNST_					0	0	0		nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2586669921875	2	524.275095	1046.53564	0.015218	7.9783E-06	-3.355	-0.0017589	-3.3398	-0.001751	524.7747429084344	26.11	0.19889	26.191	26.091	26.29	0.081293					7	4	2	0	0	0	0.024427	1	1244	1244		51.335	3.4199	1	32184			25747	7394	17773	17811	29639	29639					0.01423063086917864
IKAEGIIYTTQ	11	Unmodified	_IKAEGIIYTTQ_					0	0	0		ENST00000460376.5_1_7:121716545-121719057:-|nuORF;ENSG00000008311|ENST00000417368|AASS	ENST00000460376.5_1_7:121716545-121719057:-|nuORF	ENST00000460376.5_1_7:121716545-121719057:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.2690734863281	3	412.899328	1235.67615	-0.050827	-2.0986E-05	0.62187	0.00025677	0.57104	0.00023578	412.90061732965296	28.831	0.38193	28.835	28.589	28.971	0.0031357					12	8	2	0	0	0	0.024757	1	1667	1667		25.892	17.484	1	31920			25748	844	17774	17812	29640	29640					0.06774222020476373
IKAGKKLL	8	Unmodified	_IKAGKKLL_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.810302734375	2	435.810388	869.606223	1.0862	0.00047337	-0.86971	-0.00037903	0.21647	9.4342E-05	435.80986950028586	22.709	0.73727	22.507	22.24	22.977	-0.20199					33	15	4	0	0	0	0.845	1	799	799		55.504	7.5886	1	433320	+		25749	26519	17775	17813	29641	29641					0.16620432933166285
IKAKAFTI	8	Unmodified	_IKAKAFTI_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.758544921875	2	446.286746	890.558939	-0.93786	-0.00041855	0.89261	0.00039836	-0.045247	-2.0193E-05	446.28695457396884	51.328	0.78935	51.415	50.855	51.644	0.087006					37	21	2	0	0	0	0.027866	1	5395	5395		17.365	0	1	190920			25750	6441	17776	17814	29642	29642					0.1092815366217792
IKAKIAAL	8	Unmodified	_IKAKIAAL_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8839111328125	2	414.289288	826.564024	-0.4382	-0.00018154	0.40216	0.00016661	-0.036044	-1.4933E-05	414.2893830081058	27.993	0.37568	27.747	27.506	27.882	-0.24523					15	8	2	0	0	0	0.027866	1	1608	1608		20.482	0	1	79708	+		25751	19690	17777	17815	29643	29643					0.1438045752480548
IKAKLSGP	8	Unmodified	_IKAKLSGP_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	407.26373291015625	2	407.263271	812.511988	-1.3571	-0.0005527	1.5807	0.00064377	0.22361	9.107E-05	407.26378567408483	21.503	0.96819	21.29	21.069	22.037	-0.2128					33	19	2	0	0	0	0.94517	1	643	643		45.952	0	1	875050			25752	1111	17778	17816	29644	29644					0.09823294111049563
IKAKRPRNT	9	Unmodified	_IKAKRPRNT_					0	0	0			REV__nc|ENSG00000259024|Q96ET8|TVP23C	REV__nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.3082885742188	2	542.340907	1082.66726	-1.3959	-0.00075707	3.0955	0.0016788	1.6996	0.00092174	542.3424894602889	80.244	0.54926	80.266	80.063	80.612	0.021439					18	12	2	0	0	0	0.024477	1	9882	9882		14.865	0	1	101740	+		25753	37181	17779	17817	29645	29645					0.1292333796532148
IKALKDSSS	9	Unmodified	_IKALKDSSS_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.7720031738281	2	474.771657	947.528761	3.7581	0.0017843	-1.7668	-0.00083882	1.9913	0.00094543	474.7707675472573	18.842	0.59013	18.905	18.649	19.239	0.063307					20	11	2	0	0	0	0.96322	1	307	307		27.882	2.3082	1	60046			25754	6366	17780	17818	29646	29646					0.05289750206327426
IKALLCGR	8	Unmodified	_IKALLCGR_					0	0	0		nc|ENSG00000165583|O60225-2|SSX5	nc|ENSG00000165583|O60225-2|SSX5	nc|ENSG00000165583|O60225-2|SSX5	MSMS	OPSCC_40_ClassI_Rep-3	6	437.27227783203125	2	437.270573	872.526593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.053	1	20.84	20.34	21.34	-0.2128								0	0	0	0.9442	1	595	595		24.203	4.8428	1				25755	18466	17781	17819	29647	29647					0.08523042987530971
IKAPARPK	8	Unmodified	_IKAPARPK_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7660217285156	2	440.789987	879.565421	-0.041014	-1.8079E-05	-3.1653	-0.0013952	-3.2063	-0.0014133	440.78850378789747	37.226	0.18687	37.033	36.927	37.114	-0.193					6	4	2	0	0	0	0.027866	1	2968	2968		3.9852	0	1	109560			25756	5322	17782	17820	29648	29648					0.12082091613558532
IKARVGPI	8	Unmodified	_IKARVGPI_					0	0	0		ENST00000606089.1_1_5:133340855-133341212:+|nuORF	ENST00000606089.1_1_5:133340855-133341212:+|nuORF	ENST00000606089.1_1_5:133340855-133341212:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.25390625	2	427.284537	852.554522	-0.17967	-7.6771E-05	1.7712	0.0007568	1.5915	0.00068003	427.2853763127999	23.215	0.36165	23.292	23.114	23.476	0.076241					14	8	2	0	0	0	0.027866	1	844	844		19.36	0	1	146060			25757	17562	17783	17821	29649	29649					0.12234689239289764
IKASSISHMP	10	Unmodified	_IKASSISHMP_					0	0	0		PCSK2|p.E251K|1|0.09|ENSG00000125851|chr20:17436749-17436749|G/A|missense_variant	PCSK2|p.E251K|1|0.09|ENSG00000125851|chr20:17436749-17436749|G/A|missense_variant	PCSK2|p.E251K|1|0.09|ENSG00000125851|chr20:17436749-17436749|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7863159179688	2	535.786784	1069.55902	-1.4843	-0.00079527	-2.4499	-0.0013126	-3.9342	-0.0021079	535.7854520728487	55.519	2.1016	55.617	55.257	57.359	0.098015					103	57	4	0	0	0	0.45367	1	6104	6104		93.195	13.483	1	26457000			25758	18953	17784	17822	29650	29650					0.027017855998792584
IKAVEMAC	8	Unmodified	_IKAVEMAC_					0	0	0			REV__ENSG00000130052|ENST00000374599|STARD8	REV__ENSG00000130052|ENST00000374599|STARD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.720458984375	2	432.719524	863.424495	0.23941	0.0001036	1.9634	0.00084961	2.2028	0.00095321	432.72025659621454	30.771	1.8285	30.619	30.298	32.127	-0.15231					91	44	4	0	0	0	0.95417	1	1973	1973		44.531	3.9584	1	2000600	+		25759	23078	17785	17823	29651	29651					-0.01267991146391978
IKAVQLPQ	8	Unmodified	_IKAVQLPQ_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.783935546875	2	448.781828	895.549102	0.32739	0.00014693	3.9618	0.001778	4.2892	0.0019249	448.7835949324866	101.07	0.77135	101.06	100.76	101.53	-0.0054474					39	17	4	0	0	0	0.93274	1	12845	12845		47.916	0	1	402600	+		25760	26668	17786	17824	29652	29652					0.09714965656814911
IKAWTARE	8	Unmodified	_IKAWTARE_					0	0	0		ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	ENST00000565493.1_1_20:34638316-34638640:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.77764892578125	2	487.774534	973.534515	-0.88194	-0.00043019	1.0483	0.00051135	0.1664	8.1163E-05	487.7748682522522	52.266	0.73023	52.147	51.869	52.599	-0.11875					29	18	2	0	0	0	0.94504	1	5430	5430		45.972	0.020292	1	1615700			25761	16921	17787	17825	29653	29653					0.04668893508664951
IKCFETQPLY	10	Unmodified	_IKCFETQPLY_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3143920898438	2	621.315374	1240.6162	0.018917	1.1754E-05	-3.0174	-0.0018748	-2.9985	-0.001863	621.3134783770568	66.633	3.4513	66.385	66.061	69.512	-0.24839					161	90	2	0	0	0	0.50517	1	7671	7671		87.696	0	1	29011000			25762	7034	17788	17826	29654	29654					0.005512080855851309
IKCFETQPLY	10	Unmodified	_IKCFETQPLY_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3124389648438	2	621.315374	1240.6162	-1.4993	-0.00093152	-1.5442	-0.00095941	-3.0434	-0.0018909	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.67706	2	7687	7660;7687		68.787	3.2353	1	29556000			25763	7034	17788	17826	29655;29656	29656					0.005512080855851309
IKCGVKYG	8	Unmodified	_IKCGVKYG_					0	0	0			REV__ENST00000259526.3_1_8:120436340-120436517:+|nuORF	REV__ENST00000259526.3_1_8:120436340-120436517:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7803039550781	2	434.241481	866.468409	-0.89273	-0.00038766	-3.2599	-0.0014156	-4.1527	-0.0018033	434.23791189160175	38.164	0.60214	38.164	38.037	38.639	0					22	16	3	0	0	0	0.027866	1	3223	3223		33.516	18.851	1	126100	+		25764	29590	17789	17827	29657	29657					0.029833613422511007
IKCQVVKEI	9	Unmodified	_IKCQVVKEI_					0	0	0		ENSG00000269586|ENST00000682849|CT45A10;chrX:135881315-135882536|148|104.25|1.0|6.7|-|ENST00000617981|CT45A10,CT45A10	ENSG00000269586|ENST00000682849|CT45A10	ENSG00000269586|ENST00000682849|CT45A10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2671508789062	2	530.315177	1058.6158	-0.34264	-0.00018171	3.4119	0.0018094	3.0693	0.0016277	530.3168424535229	20.627	0.54572	20.404	20.216	20.762	-0.22344					22	10	4	0	0	0	0.024374	1	555	555		32.812	0	1	157400			25765	438	17790	17828	29658	29658					0.08883833156392029
IKDEQKNL	8	Unmodified	_IKDEQKNL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.78265380859375	2	494.277106	986.53966	0.27529	0.00013607	-0.53239	-0.00026315	-0.2571	-0.00012708	494.276994997198	50.48	0.592	50.3	50.055	50.647	-0.18071					22	15	2	0	0	0	0.027866	1	5087	5087		11.511	4.7755	1	1566900			25766	912	17791	17829	29659	29659					0.04585152580614249
IKDILSPLF	9	Unmodified	_IKDILSPLF_					0	0	0		ENSG00000042088|ENST00000335725|TDP1	ENSG00000042088|ENST00000335725|TDP1	ENSG00000042088|ENST00000335725|TDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.771484375	2	523.318243	1044.62193	-0.2857	-0.00014951	2.5809	0.0013506	2.2952	0.0012011	523.3193342013841	72.339	0.62363	72.141	71.788	72.412	-0.19811					22	14	2	0	0	0	0.024344	1	8487	8487		54.776	5.3348	1	104870			25767	1076	17792	17830	29660	29660					0.1014067465955577
IKDIWIKGE	9	Unmodified	_IKDIWIKGE_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.31787109375	2	551.318774	1100.623	-0.027229	-1.5012E-05	-0.39049	-0.00021529	-0.41772	-0.0002303	551.3184938717968	64.174	0.5957	63.981	63.638	64.234	-0.19243					49	14	4	0	0	0	0.17845	1	7314	7314		93.143	0	1	6508600	+		25768	22806	17793	17831	29661	29661					0.07670889028486272
IKDMIKYY	8	Unmodified	_IKDMIKYY_					0	0	0		nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD	nc|ENSG00000164120|P15428-5|HPGD	nc|ENSG00000164120|P15428-5|HPGD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7977294921875	2	537.288628	1072.5627	-0.69537	-0.00037362	-4.1952	-0.002254	-4.8906	-0.0026277	537.285619735159	65.719	1.0479	65.756	65.081	66.128	0.037376					67	28	4	0	0	0	0.027866	1	7751	7751		82.305	0	1	3772900			25769	7218	17795	17832	29662	29662					0.02932455373729681
IKDPDSLLA	9	Unmodified	_IKDPDSLLA_					0	0	0			REV__ENSG00000167264|ENST00000565263|DUS2	REV__ENSG00000167264|ENST00000565263|DUS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2612609863281	2	486.274032	970.533512	-0.54856	-0.00026675	1.57	0.00076344	1.0214	0.00049669	486.2744702605481	46.265	0.27114	46.316	46.203	46.474	0.051399					17	7	3	0	0	0	0.024209	1	4482	4482		66.429	13.493	1	160910	+		25770	26122	17796	17833	29663	29663					0.04706634349099659
IKDPDSLLA	9	Unmodified	_IKDPDSLLA_					0	0	0			REV__ENSG00000167264|ENST00000565263|DUS2	REV__ENSG00000167264|ENST00000565263|DUS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.274032	970.533512	-0.3774	-0.00018352	3.0402	0.0014784	2.6628	0.0012949	486.2749916211556	46.491	0.69096	46.289	45.783	46.474	-0.2011	-0.013347	0.00049155	NaN	44.377	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158240	+		25771	26122	17796	17833							0.04706634349099659
IKDQANKV	8	Unmodified	_IKDQANKV_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7511291503906	2	458.266542	914.51853	0.2745	0.00012579	-1.0462	-0.00047944	-0.77171	-0.00035365	458.2657290176743	41.94	0.61892	41.966	41.533	42.152	0.026016					23	17	2	0	0	0	0.027866	1	3763	3763		23.042	12.177	1	284620	+		25772	28272	17797	17834	29664	29664					0.05785187271760606
IKDQKGVPQ	9	Unmodified	_IKDQKGVPQ_					0	0	0		nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	nc|ENSG00000204516|Q29980-2|MICB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.75604248046875	2	506.792924	1011.57129	-0.7715	-0.00039099	1.9237	0.0009749	1.1522	0.00058391	506.7939968463008	35.015	0.48497	35.015	34.785	35.27	0					19	12	2	0	0	0	0.024427	1	2645	2645		42.396	16.822	1	256370			25773	18662	17798	17835	29665	29665					0.06597145334581
IKDREFET	8	Unmodified	_IKDREFET_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L;nc|ENSG00000153157|Q5T4T6-2|SYCP2L;ENST00000480294.1_1_6:10891760-10930631:+|nuORF	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2324829101562	2	519.266739	1036.51892	-0.28536	-0.00014818	0.24899	0.00012929	-0.036364	-1.8883E-05	519.2666519314475	45.353	0.29628	45.142	44.988	45.284	-0.21109					14	8	2	0	0	0	0.027866	1	4299	4299		12.207	0	1	437450			25774	6324	17799	17836	29666	29666					0.002125622009543804
IKDSDKLLK	9	Unmodified	_IKDSDKLLK_					0	0	0			REV__ENSG00000124766|ENST00000244745|SOX4	REV__ENSG00000124766|ENST00000244745|SOX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.8115844726562	2	530.324057	1058.63356	0.40649	0.00021557	-0.65215	-0.00034585	-0.24565	-0.00013028	530.3235516568026	68.469	0.80338	68.239	67.794	68.598	-0.23048					40	19	3	0	0	0	0.024337	1	7934	7934		33.922	0	1	598790	+		25775	22785	17800	17837	29667	29667					0.10658871682880999
IKEAEKKNQTY	11	Unmodified	_IKEAEKKNQTY_					0	0	0			REV__nc|ENSG00000145779|O95379-3|TNFAIP8	REV__nc|ENSG00000145779|O95379-3|TNFAIP8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2450256347656	3	451.245386	1350.71433	0.24205	0.00010922	-0.7826	-0.00035315	-0.54056	-0.00024392	451.2450383307364	45.718	0.8969	45.621	45.326	46.223	-0.096649					99	24	5	0	0	0	0.98625	1	4372	4372		39.873	4.6949	1	13432000	+		25776	24431	17801	17838	29668	29668					0.05300107935136111
IKEELILN	8	Unmodified	_IKEELILN_					0	0	0			REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.83636474609375	2	486.292225	970.569897	-0.98301	-0.00047803	2.1434	0.0010423	1.1604	0.00056431	486.29277296370697	33.684	0.5955	33.513	33.151	33.746	-0.17102					25	14	3	0	0	0	0.027866	1	2430	2430		40.573	0	1	266180	+		25777	28439	17802	17839	29669	29669					0.08343511245823265
IKEELLYF	8	Unmodified	_IKEELLYF_					0	0	0		nc|ENSG00000165983|Q96BW5-2|PTER;ENSG00000165983|ENST00000535784|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7388305664062	2	527.794601	1053.57465	-0.042411	-2.2384E-05	-0.46752	-0.00024676	-0.50993	-0.00026914	527.7926659168157	52.939	0.20168	52.812	52.672	52.874	-0.12705					6	4	2	0	0	0	0.027866	1	5524	5524		25.45	0.94616	1	24705			25778	18470	17803	17840	29670	29670					0.05000395388583456
IKEELLYF	8	Unmodified	_IKEELLYF_					0	0	0		nc|ENSG00000165983|Q96BW5-2|PTER;ENSG00000165983|ENST00000535784|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	nc|ENSG00000165983|Q96BW5-2|PTER	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	527.794601	1053.57465	0.20661	0.00010905	3.4684	0.0018306	3.6751	0.0019397	527.7960622863038	52.779	0.19204	52.871	52.71	52.902	0.091938	0.029054	0.0027099	NaN	25.45	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76366			25779	18470	17803	17840							0.05000395388583456
IKEFILEKN	9	Unmodified	_IKEFILEKN_					0	0	0		nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3300170898438	2	567.331882	1132.64921	-1.316	-0.00074659	-2.1119	-0.0011981	-3.4278	-0.0019447	567.3305774108686	93.251	0.61166	93.111	92.829	93.441	-0.13995					35	13	3	0	0	0	0.78823	1	11482	11482		40.058	6.1365	1	839360			25780	18621	17804	17841	29671	29671					0.0881915819995811
IKEFKSKLN	9	Unmodified	_IKEFKSKLN_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.829833984375	2	553.832049	1105.64954	-0.047374	-2.6237E-05	-3.6408	-0.0020164	-3.6882	-0.0020426	553.829864190126	87.126	2.4196	87.09	85.747	88.167	-0.035355					169	57	4	0	0	0	0.82115	1	10950	10950		37.812	4.9991	1	1369000	+		25781	25462	17805	17842	29672	29672					0.10094577919812764
IKEFKSKLN	9	Unmodified	_IKEFKSKLN_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8297119140625	2	553.832049	1105.64954	0.36825	0.00020395	-4.0996	-0.0022705	-3.7314	-0.0020666	553.8296512023196	87.117	2.5491	87.138	85.735	88.284	0.021255					196	60	4	0	0	0	0.93097	1	10891	10891		30.318	1.1682	1	1337200	+		25782	25462	17805	17842	29673	29673					0.10094577919812764
IKEFKSKLN	9	Unmodified	_IKEFKSKLN_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.83056640625	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	0.82115	1	10691	10691		37.812	12.237	1	1711900	+		25783	25462	17805	17842	29674	29674					0.10094577919812764
IKEFKSKLN	9	Unmodified	_IKEFKSKLN_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8305053710938	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	0.67687	1	11035	11035		47.657	1.6851	1	5986700	+		25784	25462	17805	17842	29675	29675					0.10094577919812764
IKEGNKPVL	9	Unmodified	_IKEGNKPVL_					0	0	0		nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1	nc|ENSG00000099250|O14786-3|NRP1	nc|ENSG00000099250|O14786-3|NRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2877502441406	2	499.305667	996.596781	-0.10589	-5.2872E-05	-2.9174	-0.0014567	-3.0233	-0.0015095	499.304074764615	55.842	0.33778	55.686	55.404	55.742	-0.15601					13	8	2	0	0	0	0.020546	1	6129	6129		96.19	8.4361	1	213980			25785	2064	17806	17843	29676	29676					0.09834619856997051
IKEGYYKRIL	10	Unmodified	_IKEGYYKRIL_					0	0	0			REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.882568359375	2	641.87953	1281.74451	0.89146	0.00057221	3.5954	0.0023078	4.4869	0.00288	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	1.1088	1	12090	12090		31.53	4.8369	1	2810000	+		25786	27083	17807	17844	29677	29677					0.11490511390979918
IKEHVTLSSH	10	Unmodified	_IKEHVTLSSH_					0	0	0			REV__nc|ENSG00000185252|Q16587-4|ZNF74	REV__nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8140258789062	2	575.814387	1149.61422	-0.1695	-9.7601E-05	-0.49644	-0.00028586	-0.66594	-0.00038346	575.8140848033166	47.484	0.80964	47.387	47.008	47.818	-0.096653					72	21	5	0	0	0	0.94316	1	4676	4676		51.193	10.415	1	6822000	+		25787	33313	17808	17845	29678	29678					0.04539915392001603
IKEIGWTD	8	Unmodified	_IKEIGWTD_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.275146484375	2	481.2531	960.491647	-0.8474	-0.00040781	1.3381	0.00064395	0.49068	0.00023614	481.2522251876904	43.994	0.39124	43.849	43.639	44.031	-0.14471					17	10	2	0	0	0	0.027866	1	4156	4156		12.207	1.3413	1	164310			25788	1350	17809	17846	29679	29679					0.00982078660570096
IKEIGWTD	8	Unmodified	_IKEIGWTD_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.2531	960.491647	-0.62002	-0.00029839	3.2638	0.0015707	2.6438	0.0012723	481.2533860661066	43.866	0.3622	43.866	43.548	43.91	0	0.021809	0.0015737	NaN	7.1934	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121000			25789	1350	17809	17846							0.00982078660570096
IKEIGWTD	8	Unmodified	_IKEIGWTD_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.2531	960.491647	-0.17375	-8.3619E-05	0.92881	0.00044699	0.75506	0.00036337	481.2531867166924	43.786	0.21742	43.817	43.664	43.882	0.030827	-0.02688	-0.00067377	NaN	7.1934	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111670			25790	1350	17809	17846							0.00982078660570096
IKEIVPLFREI	11	Unmodified	_IKEIVPLFREI_					0	0	0		ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	ENSG00000176148|ENST00000334274|TCP11L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.9486083984375	3	452.946501	1355.81767	1.0628	0.00048139	3.4749	0.0015739	4.5377	0.0020553	452.94795921706185	106.19	0.77414	106.19	105.9	106.68	0					72	28	4	0	0	0	1.0471	2	13634	13634;13651		25.892	5.8612	1	1126400			25791	8614	17810	17847	29680;29681	29680					0.15399640113628266
IKELEASK	8	Unmodified	_IKELEASK_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;RABEP1|p.S593Kfs*12|1|0.14|ENSG00000029725|chr17:5365219-5365220|-/CGAAGATT|frameshift_variant;ENST00000575475.2_1_17:5185712-5281605:+|nuORF	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.26875	916.522947	-0.88535	-0.00040661	-0.68605	-0.00031508	-1.5714	-0.00072169	459.2680881269394	26.153	1.345	25.989	25.834	27.178	-0.16331					75	35	4	0	0	0	0.027866	1	1324	1324		54.776	0	1	3825400			25792	1007	17811	17848	29682	29682					0.06134651694662807
IKELELLL	8	Unmodified	_IKELELLL_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.3115539550781	2	485.812793	969.611034	0.026188	1.2722E-05	-0.64721	-0.00031442	-0.62102	-0.0003017	485.81251497527137	106.76	0.47713	106.76	106.63	107.1	-0.003479					21	15	2	0	0	0	0.68535	1	13671	13671		68.485	0	1	211050			25793	3688	17812	17849	29683	29683					0.12501272285282994
IKELKFQIT	9	Unmodified	_IKELKFQIT_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3392944335938	2	560.342249	1118.66995	0.14489	8.1187E-05	-3.9654	-0.002222	-3.8205	-0.0021408	560.3398724189238	101.17	1.8281	101.17	100.81	102.63	-0.0054474					131	41	5	0	0	0	0.89441	1	12847	12847		32.812	2.4947	1	15569000	+		25794	20141	17813	17850	29684	29684					0.11535748579603933
IKEMGAEKL	9	Unmodified	_IKEMGAEKL_					0	0	0			REV__ENSG00000134321|ENST00000382040|RSAD2	REV__ENSG00000134321|ENST00000382040|RSAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.78240966796875	2	509.78371	1017.55287	-0.29326	-0.0001495	-4.0816	-0.0020807	-4.3749	-0.0022302	509.78150420247385	43.868	0.68097	43.899	43.522	44.203	0.030827					56	18	4	0	0	0	0.2508	1	4099	4099		82.241	4.9229	1	4817600	+		25795	23438	17814	17851	29685	29685					0.04479267368344608
IKEMGAEKLLL	11	Unmodified	_IKEMGAEKLLL_					0	0	0			REV__ENSG00000134321|ENST00000382040|RSAD2	REV__ENSG00000134321|ENST00000382040|RSAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.8661499023438	2	622.867774	1243.72099	-0.6532	-0.00040686	-2.0382	-0.0012695	-2.6914	-0.0016764	622.8664447649837	80.635	1.1874	80.483	80.049	81.237	-0.15168					81	28	4	0	0	0	0.42031	1	9999	9999		81.525	1.0704	1	2105000	+		25796	23438	17815	17852	29686	29686					0.10888329562158106
IKEMGAEKLLL	11	Unmodified	_IKEMGAEKLLL_					0	0	0			REV__ENSG00000134321|ENST00000382040|RSAD2	REV__ENSG00000134321|ENST00000382040|RSAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.8661499023438	2	622.867774	1243.72099	-1.3607	-0.00084753	-1.2727	-0.00079272	-2.6334	-0.0016402	622.8668762171536	80.5	1.3035	80.521	80.146	81.449	0.021446					87	31	4	0	0	0	0.20179	1	9930	9930		99.013	2.3479	1	2188800	+		25797	23438	17815	17852	29687	29687					0.10888329562158106
IKENQSHE	8	Unmodified	_IKENQSHE_					0	0	0			REV__ENSG00000150656|ENST00000358821|CNDP1	REV__ENSG00000150656|ENST00000358821|CNDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.328857421875	2	492.740888	983.467223	0.42974	0.00021175	0.22671	0.00011171	0.65645	0.00032346	492.74108797780883	18.378	0.73933	18.222	17.854	18.594	-0.15637					20	14	2	0	0	0	0.027866	1	299	299		57.811	7.7867	1	36011	+		25798	24728	17816	17853	29688	29688					-0.025171814929535685
IKEPVILHAS	10	Unmodified	_IKEPVILHAS_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.83056640625	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	1.1246	1	10751	10751		23.523	3.5259	1	1711900	+		25799	25364	17817	17854	29689	29689					0.10094577919790026
IKERELELQ	9	Unmodified	_IKERELELQ_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.3297729492188	2	579.32987	1156.64519	-0.91025	-0.00052733	0.23457	0.00013589	-0.67567	-0.00039144	579.3299521793355	47.296	0.60843	47.355	47.069	47.677	0.059093					45	17	3	0	0	0	0.071379	1	4664	4664		120.87	0	1	4113300			25800	10033	17818	17855	29690	29690					0.07313068706230297
IKERQDLI	8	Unmodified	_IKERQDLI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8001708984375	2	507.800749	1013.58694	-0.34043	-0.00017287	-0.6441	-0.00032708	-0.98453	-0.00049995	507.80041380250987	31.175	1.4526	30.934	30.585	32.038	-0.24109					97	34	5	0	0	0	0.44658	1	2032	2032		90.777	3.0224	1	13276000	+		25801	22560	17819	17856	29691	29691					0.08069431851606623
IKETEFLLKV	10	Unmodified	_IKETEFLLKV_					0	0	0			REV__ENSG00000088451|ENST00000261296|TGDS	REV__ENSG00000088451|ENST00000261296|TGDS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.54705810546875	3	407.248068	1218.72238	0.4658	0.0001897	1.1003	0.0004481	1.5661	0.0006378	407.2483289347419	27.242	1.2854	27.323	26.923	28.208	0.081293					54	33	3	0	0	0	0.03519	1	1525	1525		27.047	0	1	244370	+		25802	20816	17820	17857	29692	29692					0.12176286922544932
IKETKAVEV	9	Unmodified	_IKETKAVEV_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.81365966796875	2	508.802957	1015.59136	-0.13948	-7.0968E-05	3.0652	0.0015596	2.9258	0.0014886	508.804698017044	93.437	0.65355	93.293	93.002	93.655	-0.1441					31	14	3	0	0	0	0.024523	1	11449	11449		10.265	3.0719	1	254240	+		25803	22435	17821	17858	29693	29693					0.08418896274520193
IKEVLVEML	9	Oxidation (M)	_IKEVLVEM(Oxidation (M))L_		IKEVLVEM(1)L		IKEVLVEM(48)L	0	0	1			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3167724609375	2	545.314843	1088.61513	-0.40471	-0.0002207	3.6345	0.001982	3.2298	0.0017613	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.67687	1	10800	10800		47.657	9.8458	1	3438300	+		25804	27834	17822	17859	29694	29694		825			0.07436993716669349
IKEVLVEML	9	Oxidation (M)	_IKEVLVEM(Oxidation (M))L_		IKEVLVEM(1)L		IKEVLVEM(55)L	0	0	1			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3173828125	2	545.314843	1088.61513	-0.23183	-0.00012642	3.5446	0.0019329	3.3128	0.0018065	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.56934	1	11101	11101		54.776	10.399	1	11601000	+		25805	27834	17822	17859	29695	29695		825			0.07436993716669349
IKEWDFSE	8	Unmodified	_IKEWDFSE_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.271484375	2	527.248015	1052.48148	-0.20641	-0.00010883	-4.2796	-0.0022564	-4.486	-0.0023653	527.2456805743608	47.087	0.5539	46.893	46.678	47.232	-0.19387					25	14	2	0	0	0	0.027866	1	4607	4607		31.955	0	1	387920			25806	8193	17823	17860	29696	29696					-0.042665290646709764
IKFFQAIYL	9	Unmodified	_IKFFQAIYL_					0	0	0			REV__ENSG00000120697|ENST00000239891|ALG5	REV__ENSG00000120697|ENST00000239891|ALG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.8359985351562	2	571.83406	1141.65357	0.36309	0.00020763	-2.9839	-0.0017063	-2.6208	-0.0014987	571.8322566399469	74.145	1.2006	73.963	73.65	74.851	-0.18278					61	30	3	0	0	0	0.55828	1	8760	8760		55.504	4.1688	1	4749700	+		25807	22550	17824	17861	29697	29697					0.08840667413528536
IKFNQPLDL	9	Unmodified	_IKFNQPLDL_					0	0	0			REV__ENSG00000013561|ENST00000394520|RNF14	REV__ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.3086547851562	2	544.310949	1086.60735	-0.12844	-6.9913E-05	-3.3097	-0.0018015	-3.4381	-0.0018714	544.3091335060176	104.84	0.82566	104.72	104.29	105.11	-0.12561					63	23	4	0	0	0	0.96322	1	13046	13046		27.882	0	1	843350	+		25808	19959	17825	17862	29698	29698					0.06750602511419856
IKFRDFWVNSI	11	Unmodified	_IKFRDFWVNSI_					0	0	0			REV__ENSG00000143353|ENST00000366928|LYPLAL1;REV__ENST00000463964.5_1_1:219347256-219385067:+|nuORF	REV__ENSG00000143353|ENST00000366928|LYPLAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.26043701171875	3	475.59435	1423.76122	0.048043	2.2849E-05	-3.2863	-0.001563	-3.2383	-0.0015401	475.5927666924782	43.67	0.50648	43.67	43.404	43.91	0					19	13	2	0	0	0	0.024801	1	4118	4118		17.833	0	1	138490	+		25809	24230;32956	17826	17863	29699	29699					0.06629012276948743
IKFVQPLKV	9	Unmodified	_IKFVQPLKV_					0	0	0			REV__nc|ENSG00000129255|O75352-2|MPDU1;REV__ENST00000572836.5_1_17:7487180-7490759:+|nuORF	REV__nc|ENSG00000129255|O75352-2|MPDU1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3306884765625	2	536.349877	1070.6852	-1.0884	-0.00058379	3.0176	0.0016185	1.9291	0.0010347	536.3516085815016	46.722	0.36699	46.528	46.345	46.712	-0.19387					20	10	3	0	0	0	0.024506	1	4491	4491		16.473	0	1	463370	+		25810	36650;23041	17827	17864	29700	29700					0.15268660167453163
IKFYMGDI	8	Unmodified	_IKFYMGDI_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|151|3|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|151|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.26971435546875	2	493.754421	985.494289	1.04	0.00051349	3.7595	0.0018563	4.7995	0.0023698	493.7558215192887	36.195	0.63267	35.997	35.742	36.375	-0.19829					44	16	4	0	0	0	0.027866	1	2773	2773		12.959	0	1	280850	+		25811	36234	17828	17865	29701	29701					0.0009621079386761267
IKGAKKNASP	10	Unmodified	_IKGAKKNASP_					0	0	0			REV__ENST00000339436.11_1_6:36567696-36568038:+|nuORF	REV__ENST00000339436.11_1_6:36567696-36568038:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.307861328125	2	507.308741	1012.60293	-0.8274	-0.00041975	-0.78171	-0.00039657	-1.6091	-0.00081632	507.3084751133819	43.57	1.8058	43.333	42.879	44.685	-0.23736					159	48	6	0	0	0	0.80817	1	3975	3975		60.118	1.3363	1	107780000	+		25812	30601	17829	17866	29702	29702					0.09713138088511641
IKGAKKNASP	10	Unmodified	_IKGAKKNASP_					0	0	0			REV__ENST00000339436.11_1_6:36567696-36568038:+|nuORF	REV__ENST00000339436.11_1_6:36567696-36568038:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3086853027344	2	507.308741	1012.60293	-1.0431	-0.00052917	-0.64497	-0.0003272	-1.6881	-0.00085637	507.3085410053728	43.586	1.6368	43.367	43.032	44.668	-0.21939					155	44	6	0	0	0	0.94316	1	4023	4023		51.193	1.7511	1	106880000	+		25813	30601	17829	17866	29703	29703					0.09713138088511641
IKGGFQAR	8	Unmodified	_IKGGFQAR_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.75653076171875	2	438.756144	875.497735	0.53429	0.00023442	-0.29125	-0.00012779	0.24305	0.00010664	438.75589872562495	41.148	1.0366	41.025	40.762	41.798	-0.12317					70	28	4	0	0	0	0.93274	1	3664	3664		47.916	0	1	3270000	+		25814	20415	17830	17867	29704	29704					0.05500641682749574
IKGGYQKPQ	9	Unmodified	_IKGGYQKPQ_					0	0	0		nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2353210449219	2	509.787641	1017.56073	-0.41798	-0.00021308	1.923	0.0009803	1.505	0.00076722	509.78858461394566	30.97	0.57443	31.042	30.915	31.489	0.071741					18	13	2	0	0	0	0.024506	1	1974	1974		23.042	0	1	43544			25815	1226	17831	17868	29705	29705					0.05265162680143476
IKGGYQKPQ	9	Unmodified	_IKGGYQKPQ_					0	0	0		nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.787641	1017.56073	-0.222	-0.00011317	0.10722	5.4659E-05	-0.11478	-5.8512E-05	509.7875034160925	31.443	0.41452	31.202	30.954	31.369	-0.24109	0.070156	-0.00017212	NaN	23.042	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114130			25816	1226	17831	17868							0.05265162680143476
IKGGYQKPQ	9	Unmodified	_IKGGYQKPQ_					0	0	0		nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.787641	1017.56073	-0.48385	-0.00024666	-0.3915	-0.00019958	-0.87535	-0.00044624	509.78755819262204	31.338	0.4157	31.152	30.945	31.36	-0.18503	0.020392	-0.0006806	NaN	23.042	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80687			25817	1226	17831	17868							0.05265162680143476
IKGHEKEP	8	Unmodified	_IKGHEKEP_					0	0	0			REV__nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3;REV__ENSG00000187626|ENST00000377294|ZKSCAN4	REV__nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.28155517578125	2	469.258717	936.50288	-0.31025	-0.00014559	0.0082108	3.853E-06	-0.30204	-0.00014174	469.2588442852324	45.304	0.44713	45.204	44.977	45.424	-0.099445					19	12	2	0	0	0	0.027866	1	4273	4273		63.306	0	1	317460	+		25818	28112;27951	17832	17869	29706	29706					0.032089007547028814
IKGITEKSV	9	Unmodified	_IKGITEKSV_					0	0	0			REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.75128173828125	2	487.797675	973.580796	-0.60527	-0.00029525	-0.34611	-0.00016883	-0.95138	-0.00046408	487.7972861048741	75.783	0.50633	75.51	75.306	75.812	-0.27266					29	12	3	0	0	0	0.022411	1	8987	8987		113.41	28.251	1	261550	+		25819	25934	17833	17870	29707	29707					0.09294913620090028
IKGKTLLPN	9	Unmodified	_IKGKTLLPN_					0	0	0		DNAH17|p.I164N|1|0.17|ENSG00000187775|chr17:78572749-78572749|A/T|missense_variant	DNAH17|p.I164N|1|0.17|ENSG00000187775|chr17:78572749-78572749|A/T|missense_variant	DNAH17|p.I164N|1|0.17|ENSG00000187775|chr17:78572749-78572749|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3088684082031	2	492.316035	982.617516	0.3905	0.00019225	-0.19362	-9.5321E-05	0.19688	9.6928E-05	492.31564262019344	18.689	0.59439	18.485	18.014	18.609	-0.20371					16	11	3	0	0	0	0.024541	1	310	310		16.473	10.915	1	67817			25820	652	17834	17871	29708	29708					0.1255121023666561
IKGKTLLPN	9	Unmodified	_IKGKTLLPN_					0	0	0		DNAH17|p.I164N|1|0.17|ENSG00000187775|chr17:78572749-78572749|A/T|missense_variant	DNAH17|p.I164N|1|0.17|ENSG00000187775|chr17:78572749-78572749|A/T|missense_variant	DNAH17|p.I164N|1|0.17|ENSG00000187775|chr17:78572749-78572749|A/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.316035	982.617516	0.29223	0.00014387	0.13326	6.5605E-05	0.42549	0.00020947	492.31566830952147	18.54	0.59193	18.383	18.002	18.594	-0.15637	-0.050862	0.00019751	NaN	20.947	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44347			25821	652	17834	17871							0.1255121023666561
IKGMLLPK	8	Unmodified	_IKGMLLPK_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2408752441406	2	450.290974	898.567395	-0.62145	-0.00027983	-0.41301	-0.00018597	-1.0345	-0.0004658	450.2910070116045	23.894	0.17075	23.847	23.699	23.869	-0.047148					5	3	2	0	0	0	0.027866	1	965	965		17.365	0	1	24241	+		25822	28450	17835	17872	29709	29709					0.11405384307147415
IKGPGPAKYLR	11	Unmodified	_IKGPGPAKYLR_					0	0	0		ENSG00000182950|ENST00000332145|ODF3L1	ENSG00000182950|ENST00000332145|ODF3L1	ENSG00000182950|ENST00000332145|ODF3L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.5815124511719	3	400.580152	1198.71863	-0.064784	-2.5951E-05	1.1339	0.00045422	1.0691	0.00042827	400.5805330441618	111.26	0.1821	111.12	110.98	111.16	-0.14127					11	8	2	0	0	0	1.0281	1	13591	13591		30.569	3.8192	1	661580			25823	9179	17836	17873	29710	29710					0.12721661939326623
IKGPRKKF	8	Unmodified	_IKGPRKKF_					0	0	0		ENST00000430239.1_1_6:30664985-30665288:-|nuORF	ENST00000430239.1_1_6:30664985-30665288:-|nuORF	ENST00000430239.1_1_6:30664985-30665288:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2423400878906	2	487.318912	972.62327	-0.45068	-0.00021962	1.6234	0.00079113	1.1728	0.00057151	487.3201933970588	61.104	0.55881	60.891	60.643	61.202	-0.21339					21	14	3	0	0	0	0.027866	1	7034	7034		13.775	3.5101	1	334450			25824	14162	17837	17874	29711	29711					0.13586353538983076
IKHLKMVVS	9	Unmodified	_IKHLKMVVS_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7;nc|ENSG00000216937|Q96M83-2|CCDC7;nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;nc|ENSG00000216937|Q96M83-5|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2393188476562	2	527.825712	1053.63687	0.38365	0.0002025	-3.567	-0.0018827	-3.1833	-0.0016802	527.8235393266848	68.575	0.76039	68.344	68	68.76	-0.23048					40	18	4	0	0	0	0.024381	1	7940	7940		15.642	0	1	753970			25825	10599	17838	17875	29712	29712					0.11219843255912565
IKHRAPAP	8	Unmodified	_IKHRAPAP_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.6361389160156	2	445.271961	888.52937	-0.78163	-0.00034804	0.27627	0.00012301	-0.50536	-0.00022502	445.2718205005315	39.457	0.49457	39.481	39.313	39.808	0.023727					22	13	2	0	0	0	0.027866	1	3368	3368		18.324	0	1	126050	+		25826	28398;37672	17839	17876	29713	29713					0.08064634436686902
IKIACPAGP	9	Unmodified	_IKIACPAGP_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.5474853515625	2	435.249306	868.484059	0.27924	0.00012154	0.67346	0.00029312	0.9527	0.00041466	435.2495404744511	29.785	0.75422	29.636	29.213	29.967	-0.14952					28	17	2	0	0	0	0.024506	1	1783	1783		23.042	0	1	71890	+		25827	26683	17840	17877	29714	29714					0.04455647859288092
IKIASQQVL	9	Unmodified	_IKIASQQVL_					0	0	0		ENST00000409262.7_1_2:74332253-74332547:+|nuORF	ENST00000409262.7_1_2:74332253-74332547:+|nuORF	ENST00000409262.7_1_2:74332253-74332547:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29461669921875	2	500.313492	998.612431	-0.070058	-3.5051E-05	-4.3685	-0.0021856	-4.4386	-0.0022207	500.3104748972436	78.398	0.8609	78.144	77.869	78.729	-0.25471					26	19	2	0	0	0	0.024527	1	9308	9308		24.519	0	1	99743			25828	13770	17841	17878	29715	29715					0.11306906374034043
IKIDPYINID	10	Unmodified	_IKIDPYINID_					0	0	0		ENSG00000047230|ENST00000359276|CTPS2;ENSG00000171793|ENST00000650070|CTPS1	ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	602.3028564453125	2	602.334621	1202.65469	-2.2376	-0.0013478	-3.1256	-0.0018826	-5.3632	-0.0032304	602.3332995910005	30.941	0.20589	30.941	30.797	31.003	0					6	4	2	0	0	0	0.03519	1	2033	2033		39.253	18.416	1	28594			25829	1098	17842	17879	29716	29716					0.06146836991752025
IKIDTLAKA	9	Unmodified	_IKIDTLAKA_					0	0	0			REV__nc|ENSG00000008282|Q16563|SYPL1	REV__nc|ENSG00000008282|Q16563|SYPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7774353027344	2	486.808042	971.601532	-1.1632	-0.00056625	0.316	0.00015383	-0.84719	-0.00041242	486.80794604693966	55.995	0.69013	56.093	55.856	56.546	0.097893					21	18	2	0	0	0	0.02438	1	6214	6214		54.722	32.762	1	131490	+		25830	19878	17843	17880	29717	29717					0.11459503999753906
IKIDTLAKA	9	Unmodified	_IKIDTLAKA_					0	0	0			REV__nc|ENSG00000008282|Q16563|SYPL1	REV__nc|ENSG00000008282|Q16563|SYPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.808042	971.601532	-0.30254	-0.00014728	-0.11098	-5.4027E-05	-0.41352	-0.00020131	486.80791949586285	56.354	0.23425	56.129	55.915	56.149	-0.2248	0.021489	9.6008E-06	NaN	54.722	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132670	+		25831	19878	17843	17880							0.11459503999753906
IKIEFIGQIE	10	Unmodified	_IKIEFIGQIE_					0	0	0		ENST00000532160.1_1_11:134095196-134104948:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	ENST00000532160.1_1_11:134095196-134104948:+|nuORF	ENST00000532160.1_1_11:134095196-134104948:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	595.3450317382812	2	595.344989	1188.67542	-0.91104	-0.00054238	0.76267	0.00045405	-0.14837	-8.8329E-05	595.345334568167	71.655	1.4431	71.655	71.339	72.782	0					104	36	5	0	0	0	0.10722	2	8692	8692;8705		133.99	13.687	1	5523400			25832	6208	17844	17881	29718;29719	29718					0.08863427371397847
IKIEFIGQIE	10	Unmodified	_IKIEFIGQIE_					0	0	0		ENST00000532160.1_1_11:134095196-134104948:+|nuORF;ENSG00000151502|ENST00000281187|VPS26B	ENST00000532160.1_1_11:134095196-134104948:+|nuORF	ENST00000532160.1_1_11:134095196-134104948:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	595.3451538085938	2	595.344989	1188.67542	-0.25103	-0.00014945	0.11726	6.9809E-05	-0.13377	-7.9641E-05	595.3449370752081	72.056	1.7593	71.768	71.427	73.186	-0.28858					111	44	5	0	0	0	0.0272	1	8721	8721		157.34	25.729	1	5120600			25833	6208	17844	17881	29720	29720					0.08863427371397847
IKIEKGLLI	9	Unmodified	_IKIEKGLLI_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8313598632812	2	513.84971	1025.68487	-0.17398	-8.94E-05	-3.4706	-0.0017834	-3.6446	-0.0018728	513.8486525115692	67.596	0.24203	67.308	67.187	67.429	-0.28835					6	5	2	0	0	0	0.023473	1	8039	8039		65.465	0	1	30731	+		25834	20711	17845	17882	29721	29721					0.17305240447626602
IKIEPPCI	8	Unmodified	_IKIEPPCI_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.8880615234375	2	456.764789	911.515025	-0.96142	-0.00043914	2.3591	0.0010775	1.3977	0.0006384	456.765712271481	37.96	0.29942	37.96	37.803	38.102	0					12	8	2	0	0	0	0.027866	1	3133	3133		63.306	7.8021	1	160170	+		25835	24823	17846	17883	29722	29722					0.05572801173525477
IKIHKVEV	8	Unmodified	_IKIHKVEV_					0	0	0			REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	REV__VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7730712890625	2	483.310752	964.606951	-1.554	-0.00075105	0.99413	0.00048047	-0.55985	-0.00027058	483.31108349636844	49.111	0.89046	49.186	48.913	49.804	0.074196					43	23	2	0	0	0	0.027866	1	5060	5060		25.45	0	1	2152200	+		25836	24127	17847	17884	29723	29723					0.12323227582226082
IKIIDKLRFP	10	Unmodified	_IKIIDKLRFP_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.4031982421875	2	621.900266	1241.78598	0.31564	0.00019629	1.5538	0.0009663	1.8694	0.0011626	621.900970136541	105.9	0.32963	105.9	105.79	106.12	0					29	14	3	0	0	0	1.1265	1	13609	13609		24.519	0	1	208300			25837	9325	17848	17885	29724	29724					0.1747569215033309
IKIIQKMEQ	9	Oxidation (M)	_IKIIQKM(Oxidation (M))EQ_		IKIIQKM(1)EQ		IKIIQKM(85)EQ	0	0	1			REV__ENSG00000175792|ENST00000322623|RUVBL1	REV__ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.8300170898438	2	573.831191	1145.64783	0.036871	2.1158E-05	-2.1433	-0.0012299	-2.1064	-0.0012087	573.8299262502593	74.009	1.2227	73.738	73.384	74.606	-0.27126					52	29	2	0	0	0	0.23085	1	9001	9001		84.916	13.038	1	2786600	+		25838	26973	17849	17886	29725	29725		799			0.08083200839519122
IKIPKSSAM	9	Unmodified	_IKIPKSSAM_					0	0	0			REV__nc|ENSG00000173210|O94929-2|ABLIM3	REV__nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7906188964844	2	487.788795	973.563038	0.37956	0.00018514	3.3532	0.0016356	3.7327	0.0018208	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.80003	2	10198	10077;10198		39.253	5.023	1	2659000	+		25839	26752	17850	17887	29726;29727	29727					0.0751987509358969
IKIPKSSAM	9	Unmodified	_IKIPKSSAM_					0	0	0			REV__nc|ENSG00000173210|O94929-2|ABLIM3	REV__nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7902526855469	2	487.788795	973.563038	0.33726	0.00016451	3.3292	0.001624	3.6665	0.0017885	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.85329	1	10190	10190		35.618	7.736	1	1999500	+		25840	26752	17850	17887	29728	29728					0.0751987509358969
IKIPVAPP	8	Unmodified	_IKIPVAPP_					0	0	0		ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.7327575683594	2	417.776014	833.537475	-0.99056	-0.00041383	0.6283	0.00026249	-0.36226	-0.00015134	417.77614521799023	39.082	0.42914	38.917	38.761	39.19	-0.16458					19	11	2	0	0	0	0.027866	1	3329	3329		8.2313	0	1	247720			25841	1298	17851	17888	29729	29729					0.11404768633462936
IKIQRAYRRHL	11	Unmodified	_IKIQRAYRRHL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.3026123046875	3	485.300271	1452.87898	1.2145	0.00058938	3.452	0.0016753	4.6665	0.0022647	485.30191744492015	17.588	1.2885	17.434	17.159	18.448	-0.15403					66	25	5	0	0	0	1.1062	1	223	223		9.6461	0.43434	1	454660			25842	816	17852	17889	29730	29730					0.17066009656241476
IKIRKRYLK	9	Unmodified	_IKIRKRYLK_					0	0	0		ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1	ENSG00000065600|ENST00000261455|PACC1	ENSG00000065600|ENST00000261455|PACC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.5870056152344	3	406.611675	1216.8132	0.42203	0.0001716	-3.7017	-0.0015051	-3.2796	-0.0013335	406.6107520405107	25.151	0.46604	24.98	24.781	25.247	-0.17078					24	10	4	0	0	0	0.024466	1	1139	1139		18.262	0	1	139860			25843	1311	17853	17890	29731	29731					0.21346220481336786
IKIRLASNI	9	Unmodified	_IKIRLASNI_					0	0	0			REV__PIK3CA|p.W328S|1|0.08|ENSG00000121879|chr3:179203713-179203713|G/C|missense_variant	REV__PIK3CA|p.W328S|1|0.08|ENSG00000121879|chr3:179203713-179203713|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8177490234375	2	514.334759	1026.65496	0.1793	9.2219E-05	-0.71562	-0.00036807	-0.53632	-0.00027585	514.3342735760505	72.219	0.16172	72.219	72.131	72.292	0					5	3	2	0	0	0	0.024506	1	8786	8786		23.042	0	1	31990	+		25844	22613	17854	17891	29732	29732					0.14270301502278926
IKITKVVL	8	Unmodified	_IKITKVVL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.31341552734375	2	457.325871	912.637189	-0.63715	-0.00029139	-0.3504	-0.00016025	-0.98756	-0.00045163	457.3256415169751	44.332	0.20198	44.332	44.215	44.417	0					7	5	2	0	0	0	0.027866	1	4208	4208		29.15	0	1	105320			25845	1189	17855	17892	29733	29733					0.17737586247415038
IKIVDILEE	9	Unmodified	_IKIVDILEE_					0	0	0		nc|ENSG00000095627|Q9BXT4-4|TDRD1;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3182373046875	2	536.31844	1070.62233	-1.3587	-0.00072868	0.77108	0.00041355	-0.58759	-0.00031514	536.318665482225	80.298	1.5108	80.32	80.021	81.532	0.021439					77	36	4	0	0	0	0.17822	1	9889	9889		93.195	0	1	1108100			25846	2033	17856	17893	29734	29734					0.08984049588775633
IKIYKSLQN	9	Unmodified	_IKIYKSLQN_					0	0	0			REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|48|3|sense	REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|48|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8305053710938	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.87448	1	10717	10717		34.173	2.2177	1	1748900	+		25847	36217	17857	17894	29735	29735					0.10094577919812764
IKKALHQGF	9	Unmodified	_IKKALHQGF_					0	0	0			REV__ENSG00000136827|ENST00000351698|TOR1A	REV__ENSG00000136827|ENST00000351698|TOR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7422485351562	2	521.313826	1040.6131	-0.91875	-0.00047896	1.623	0.00084609	0.70425	0.00036714	521.313544850906	43.985	0.66501	43.88	43.434	44.099	-0.10468					27	17	3	0	0	0	0.024412	1	4039	4039		31.955	0	1	217850	+		25848	23686	17858	17895	29736	29736					0.09441745813751368
IKKCHHFQK	9	Unmodified	_IKKCHHFQK_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-6|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8032836914062	2	584.824035	1167.63352	-0.93981	-0.00054962	-0.66013	-0.00038606	-1.5999	-0.00093568	584.8235927377557	53.747	0.50021	53.502	53.275	53.775	-0.2453					26	14	3	0	0	0	0.024487	1	5667	5667		31.955	0	1	3895400			25849	3871	17859	17896	29737	29737					0.05640593201883348
IKKCQRAGI	9	Unmodified	_IKKCQRAGI_					0	0	0		nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000070961|P20020-5|ATP2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7924499511719	2	508.805311	1015.59607	-0.71399	-0.00036328	0.098698	5.0218E-05	-0.6153	-0.00031307	508.80519373130096	84.071	1.1537	84.097	83.427	84.58	0.026558					46	26	2	0	0	0	0.024323	1	10356	10356		53.351	24.202	1	231330			25850	1442	17860	17897	29738	29738					0.08889501936289435
IKKCQRAGI	9	Unmodified	_IKKCQRAGI_					0	0	0		nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000070961|P20020-5|ATP2B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.805311	1015.59607	-0.95085	-0.0004838	-0.13389	-6.8125E-05	-1.0847	-0.00055192	508.8049623846404	84.071	1.0199	83.998	83.528	84.548	-0.072769	-0.092812	-0.00017974	NaN	44.117	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205520			25851	1442	17860	17897							0.08889501936289435
IKKCVSSM	8	Unmodified	_IKKCVSSM_					0	0	0		ENST00000497543.5_1_3:75471615-75471942:-|nuORF	ENST00000497543.5_1_3:75471615-75471942:-|nuORF	ENST00000497543.5_1_3:75471615-75471942:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.20831298828125	2	448.240624	894.466695	-0.37989	-0.00017028	0.70661	0.00031673	0.32672	0.00014645	448.2408061014502	22.065	0.37994	21.874	21.662	22.042	-0.19072					18	7	3	0	0	0	0.027866	1	714	714		12.959	4.7279	1	141470			25852	15596	17861	17898	29739	29739					0.015239842619962474
IKKDLLFGEDL	11	Unmodified	_IKKDLLFGEDL_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.6986389160156	3	430.914978	1289.7231	0.56947	0.00024539	-2.3352	-0.0010063	-1.7657	-0.00076088	430.9139614734707	32.81	0.34821	32.873	32.728	33.076	0.062885					20	8	3	0	0	0	0.024747	1	2252	2252		33.039	0	1	54460	+		25853	25992	17862	17899	29740	29740					0.0898308157163683
IKKDPPSA	8	Unmodified	_IKKDPPSA_					0	0	0		PER1|p.T677I|1|0.04|ENSG00000179094|chr17:8146380-8146380|G/A|missense_variant	PER1|p.T677I|1|0.04|ENSG00000179094|chr17:8146380-8146380|G/A|missense_variant	PER1|p.T677I|1|0.04|ENSG00000179094|chr17:8146380-8146380|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2620544433594	2	428.25036	854.486168	0.49257	0.00021094	0.088816	3.8035E-05	0.58138	0.00024898	428.25085884875557	90.085	0.65379	90.099	89.798	90.452	0.013443					25	15	3	0	0	0	0.027866	1	11332	11332		53.351	14.545	1	922200			25854	18957	17863	17900	29741	29741					0.05310399868744753
IKKEKFSV	8	Unmodified	_IKKEKFSV_					0	0	0		ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	ENST00000589011.1_1_7:20201474-20224697:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.8025817871094	2	489.80276	977.590967	-0.91637	-0.00044884	0.55435	0.00027152	-0.36201	-0.00017732	489.8030056427524	25.266	0.76779	25.039	24.708	25.476	-0.22683					59	17	5	0	0	0	0.62178	1	1163	1163		74.255	5.7703	1	5271200			25855	17297	17864	17901	29742	29742					0.1012752134532775
IKKERSPRPQ	10	Unmodified	_IKKERSPRPQ_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MSMS	OPSCC_40_ClassI_Rep-2	5	619.8692016601562	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.724	1	91.6	91.1	92.1	-0.12341								0	0	0	0.75601	1	11263	11263		26.693	2.1737	1				25856	6342	17865	17902	29743	29743					0.11614974819917734
IKKFALFVI	9	Unmodified	_IKKFALFVI_					0	0	0			REV__ENST00000465541.1_1_13:51524391-51530607:+|nuORF	REV__ENST00000465541.1_1_13:51524391-51530607:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.792236328125	2	539.854796	1077.69504	-1.0326	-0.00055743	-1.9247	-0.0010391	-2.9573	-0.0015965	539.8532658743479	78.238	0.16074	78.254	78.155	78.315	0.015907					5	3	2	0	0	0	0.024541	1	9610	9610		12.959	0	1	80314	+		25857	33008	17866	17903	29744	29744					0.15929848172845595
IKKFGGIDIL	10	Unmodified	_IKKFGGIDIL_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.3263549804688	2	552.344792	1102.67503	-1.0524	-0.00058129	-2.9567	-0.0016331	-4.0091	-0.0022144	552.3426628200356	54.001	0.21084	53.865	53.779	53.99	-0.13617					12	6	3	0	0	0	0.03519	1	5728	5728		20.947	3.582	1	518100			25858	3740	17867	17904	29745	29745					0.127800524422355
IKKGKDGK	8	Unmodified	_IKKGKDGK_					0	0	0		CDC7|p.Q269K|1|0.15|ENSG00000097046|chr1:91513290-91513290|C/A|missense_variant	CDC7|p.Q269K|1|0.15|ENSG00000097046|chr1:91513290-91513290|C/A|missense_variant	CDC7|p.Q269K|1|0.15|ENSG00000097046|chr1:91513290-91513290|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2801208496094	2	437.279452	872.544351	0.23314	0.00010195	-0.078018	-3.4116E-05	0.15512	6.7832E-05	437.2792778617901	21.41	0.90859	21.233	20.967	21.875	-0.17721					42	18	4	0	0	0	0.59392	1	666	666		76.847	5.5509	1	775250			25859	236	17868	17905	29746	29746					0.1029808151403131
IKKIDNQT	8	Unmodified	_IKKIDNQT_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.26141357421875	2	480.279649	958.544745	-0.12803	-6.1491E-05	-0.67462	-0.000324	-0.80265	-0.0003855	480.27921898604023	28.437	0.53774	28.518	28.289	28.826	0.080811					30	12	3	0	0	0	0.027866	1	1644	1644		5.9211	0	1	569160	+		25860	28475	17869	17906	29747	29747					0.06381456443239131
IKKIEKNR	8	Unmodified	_IKKIEKNR_					0	0	0			REV__ENST00000295966.11_2_3:58855077-58855113:-|nuORF	REV__ENST00000295966.11_2_3:58855077-58855113:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.83251953125	2	514.832383	1027.65021	-0.011259	-5.7964E-06	-0.12755	-6.5666E-05	-0.13881	-7.1463E-05	514.8321902207867	18.066	0.69525	17.859	17.514	18.21	-0.20669					36	13	4	0	0	0	1.0574	1	263	263		25.45	0	1	310450	+		25861	29987	17870	17907	29748	29748					0.1374941735948596
IKKKAAVI	8	Unmodified	_IKKKAAVI_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.81060791015625	2	435.810388	869.606223	-0.49329	-0.00021498	0.76061	0.00033148	0.26732	0.0001165	435.810603175331	22.62	0.45631	22.435	22.236	22.692	-0.18539					24	9	3	0	0	0	0.845	1	811	811		55.504	0	1	422570			25862	2577	17871	17908	29749	29749					0.16620432933166285
IKKKAGEP	8	Unmodified	_IKKKAGEP_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	435.774003	869.533452	-0.61807	-0.00026934	-3.6407	-0.0015865	-4.2588	-0.0018559	435.77435075529473	44.329	0.45599	44.109	43.972	44.428	-0.21939					16	12	2	0	0	0	0.027866	1	4092	4092		10.265	0	1	74215	+	+	25863	19605	17872	17909	29750	29750					0.09346679139753178
IKKKANLYA	9	Unmodified	_IKKKANLYA_					0	0	0		POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7771606445312	2	524.829309	1047.64407	-0.64747	-0.00033981	0.74098	0.00038889	0.093512	4.9078E-05	524.8293608484423	49.717	0.47797	49.717	49.508	49.986	0					23	12	3	0	0	0	0.024541	1	5128	5128		17.365	3.5896	1	283230			25864	18980	17873	17910	29751	29751					0.12214899127957324
IKKKANLYA	9	Unmodified	_IKKKANLYA_					0	0	0		POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.829309	1047.64407	-0.18093	-9.4959E-05	0.12886	6.763E-05	-0.052072	-2.7329E-05	524.8290076440092	49.944	0.46959	49.793	49.596	50.065	-0.1512	0.051635	-0.00038146	NaN	17.365	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306100			25865	18980	17873	17910							0.12214899127957324
IKKKANLYA	9	Unmodified	_IKKKANLYA_					0	0	0		POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	POTEH|p.N336Y|1|0.12|ENSG00000198062|chr22:15698746-15698746|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.829309	1047.64407	-0.80474	-0.00042235	0.59569	0.00031263	-0.20905	-0.00010972	524.8293608481478	49.64	0.40945	49.714	49.503	49.912	0.074196	-0.027118	0.00010855	NaN	17.365	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294060			25866	18980	17873	17910							0.12214899127957324
IKKKEAAA	8	Unmodified	_IKKKEAAA_					0	0	0			REV__ENSG00000187605|ENST00000409262|TET3	REV__ENSG00000187605|ENST00000409262|TET3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.26611328125	2	429.774003	857.533452	0.16172	6.9503E-05	2.914	0.0012524	3.0757	0.0013219	429.7741274651981	24.085	0.22144	23.907	23.782	24.004	-0.17821					6	4	2	0	0	0	0.027866	1	1014	1014		45.952	26.592	1	12120	+		25867	27947	17874	17911	29752	29752					0.09898679139735123
IKKKKMAS	8	Unmodified	_IKKKKMAS_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.30059814453125	2	467.29933	932.584108	-0.073121	-3.4169E-05	2.8131	0.0013146	2.74	0.0012804	467.3005438633363	92.34	1.0406	92.199	91.748	92.788	-0.14131					54	24	4	0	0	0	1.0574	1	11332	11332		18.324	4.5491	1	951940			25868	9098	17875	17912	29753	29753					0.11511885193101534
IKKKLSKLT	9	Unmodified	_IKKKLSKLT_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8028564453125	2	529.868434	1057.72232	-0.6895	-0.00036534	-3.5513	-0.0018817	-4.2408	-0.002247	529.8666168951412	64.399	0.10793	64.136	64.047	64.155	-0.2626					4	2	2	0	0	0	0.024541	1	7535	7535		10.866	0	1	63857	+		25869	31835	17876	17913	29754	29754					0.19576331713210493
IKKKRMKMMLF	11	Unmodified	_IKKKRMKMMLF_					0	0	0			REV__ENST00000549040.5_1_12:106977470-107075774:+|nuORF	REV__ENST00000549040.5_1_12:106977470-107075774:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.3096923828125	3	485.290451	1452.84952	-0.35888	-0.00017416	-2.5418	-0.0012335	-2.9007	-0.0014077	485.2891919518907	65.291	0.94299	65.057	64.647	65.59	-0.2345					66	22	4	0	0	0	0.02486	1	7509	7509		8.7993	0	1	1354400	+		25870	30842	17877	17914	29755	29755					0.1412126999987322
IKKLNTISP	9	Unmodified	_IKKLNTISP_					0	0	0			REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.30841064453125	2	507.321317	1012.62808	-0.67152	-0.00034068	-1.0063	-0.0005105	-1.6778	-0.00085117	507.32069718506375	43.925	0.48146	43.82	43.583	44.064	-0.10468					25	12	3	0	0	0	0.024374	1	4037	4037		40.778	6.6056	1	435970	+		25871	34713	17878	17915	29756	29756					0.12227192891100458
IKKLRYQRI	9	Unmodified	_IKKLRYQRI_					0	0	0			REV__nc|ENSG00000133703|P01116|KRAS	REV__nc|ENSG00000133703|P01116|KRAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58770751953125	3	406.599547	1216.77681	0.4252	0.00017288	-2.7406	-0.0011143	-2.3154	-0.00094143	406.59754068868705	25.272	0.63283	25.101	24.781	25.413	-0.17078					25	14	3	0	0	0	0.024374	1	1173	1173		32.812	0	1	156110	+		25872	36674	17879	17916	29757	29757					0.17709343584647286
IKKLSEAYNER	11	Unmodified	_IKKLSEAYNER_					0	0	0		nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2351379394531	3	450.917381	1349.73031	-0.30805	-0.00013891	-2.0828	-0.00093917	-2.3909	-0.0010781	451.2506923104625	28.558	0.16581	28.554	28.416	28.582	-0.0042019					5	3	2	0	0	0	0.02473	1	1642	1642		26.75	7.1228	1	54120			25873	2985	17880	17917	29758	29758					0.06943814172018392
IKKLVREE	8	Unmodified	_IKKLVREE_					0	0	0			REV__CREB3L3|p.R248C|1|0.25|ENSG00000060566|chr19:4168378-4168378|C/T|missense_variant	REV__CREB3L3|p.R248C|1|0.25|ENSG00000060566|chr19:4168378-4168378|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8186950683594	2	507.818941	1013.62333	1.9137	0.00097181	-1.8156	-0.00092201	0.098063	4.9798E-05	507.81786299978234	19.137	0.39496	18.903	18.682	19.077	-0.23345					21	7	4	0	0	0	0.85395	1	359	359		54.776	1.8396	1	252280	+		25874	19616	17881	17918	29759	29759					0.11706308748318861
IKKMVLLNKM	10	Unmodified	_IKKMVLLNKM_					0	0	0			REV__ENST00000282251.9_1_11:107299924-107299972:-|nuORF	REV__ENST00000282251.9_1_11:107299924-107299972:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.58746337890625	3	406.587262	1216.73996	0.41999	0.00017076	-0.4104	-0.00016686	0.0095912	3.8996E-06	406.5873798753871	25.209	2.1595	25.038	24.647	26.806	-0.17078					142	54	6	0	0	0	0.94316	1	1210	1210		51.193	11.94	1	30937000	+		25875	29896	17882	17919	29760	29760					0.1402558765221329
IKKPKDVTA	9	Unmodified	_IKKPKDVTA_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;TTN|p.E2808Q|1|0.16|ENSG00000155657|chr2:178770279-178770279|C/G|missense_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7692565917969	2	500.313492	998.612431	1.0244	0.00051252	-0.97511	-0.00048786	0.049293	2.4662E-05	500.31266767392617	20.064	0.43429	19.864	19.554	19.988	-0.2001					16	8	3	0	0	0	0.024511	1	455	455		19.104	4.2386	1	57095			25876	6479;18400	17883	17920	29761	29761					0.11306906374022674
IKKPKQTPPE	10	Unmodified	_IKKPKQTPPE_					0	0	0			REV__ENSG00000163815|ENST00000296130|CLEC3B	REV__ENSG00000163815|ENST00000296130|CLEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.3508911132812	2	583.350606	1164.68666	-1.7055	-0.0009949	-1.5211	-0.00088732	-3.2266	-0.0018822	583.3496418186248	105.95	0.48483	105.82	105.56	106.04	-0.1328					61	20	4	0	0	0	1.1265	1	13206	13206		24.519	6.2571	1	702580	+		25877	25640	17884	17921	29762	29762					0.11090249465564739
IKKQAAKS	8	Unmodified	_IKKQAAKS_					0	0	0			REV__ENST00000465237.6_1_11:3845396-3845705:+|nuORF	REV__ENST00000465237.6_1_11:3845396-3845705:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2808837890625	2	437.279452	872.544351	-0.75069	-0.00032826	0.71597	0.00031308	-0.034722	-1.5183E-05	437.2796748316289	21.599	0.91922	21.386	21.069	21.988	-0.2128					42	18	4	0	0	0	0.845	1	648	648		55.504	7.5886	1	1348700	+		25878	32997	17885	17922	29763	29763					0.1029808151403131
IKKRFATG	8	Unmodified	_IKKRFATG_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.2582702636719	2	460.787444	919.560336	-0.80033	-0.00036878	0.57207	0.0002636	-0.22826	-0.00010518	460.78769793816707	38.004	0.31909	37.785	37.607	37.926	-0.21848					16	8	2	0	0	0	0.027866	1	3060	3060		7.6903	0	1	207560			25879	6576	17886	17923	29764	29764					0.09733787750940337
IKKRLEGY	8	Unmodified	_IKKRLEGY_					0	0	0			REV__ENSG00000007545|ENST00000397412|CRAMP1	REV__ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7869567871094	2	503.805834	1005.59712	-1.0742	-0.0005412	-2.6564	-0.0013383	-3.7306	-0.0018795	503.80621780219616	37.707	0.42002	37.488	37.231	37.651	-0.2195					15	10	2	0	0	0	0.027866	1	3039	3039		33.516	8.0654	1	152340	+		25880	19866	17887	17924	29765	29765					0.09454039576837658
IKKRLENN	8	Unmodified	_IKKRLENN_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000169925|Q15059-2|BRD3;nc|ENSG00000141867|O60885-2|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-3|BRD4;ENST00000601071.1_1_19:15379012-15383724:-|nuORF	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.78460693359375	2	507.806365	1013.59818	0.24841	0.00012614	-1.1624	-0.0005903	-0.91404	-0.00046416	508.30747724177576	72.769	0.1246	72.778	72.693	72.818	0.0096512					4	2	2	0	0	0	0.027866	1	8786	8786		27.882	4.8398	1	30480			25881	5525	17888	17925	29766	29766					0.09192253945741413
IKKRNQVI	8	Unmodified	_IKKRNQVI_					0	0	0			REV__ENSG00000169508|ENST00000376414|GPR183	REV__ENSG00000169508|ENST00000376414|GPR183	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.82476806640625	2	499.827101	997.639649	-0.78252	-0.00039112	-0.059139	-2.9559E-05	-0.84166	-0.00042068	499.82709477009644	21.987	1.2319	21.785	21.421	22.653	-0.20199					69	25	5	0	0	0	1.0574	1	743	743		26.796	1.3459	1	4524900	+		25882	26374	17889	17926	29767	29767					0.1407343470507385
IKKRREMIK	9	Oxidation (M)	_IKKRREM(Oxidation (M))IK_		IKKRREM(1)IK		IKKRREM(60)IK	0	0	1			REV__ENSG00000124181|ENST00000685551|PLCG1	REV__ENSG00000124181|ENST00000685551|PLCG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.5877380371094	3	406.588542	1216.7438	0.3256	0.00013238	-3.5915	-0.0014603	-3.2659	-0.0013279	406.5873231361823	25.27	2.8978	25.098	24.732	27.63	-0.17151					174	72	6	0	0	0	0.48817	1	1155	1155		60.118	12.159	1	31222000	+		25883	22742	17890	17927	29768	29768		678			0.1440939347028234
IKKSKNIKLKY	11	Unmodified	_IKKSKNIKLKY_					0	0	0		ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7426452636719	3	454.965895	1361.87586	0.61603	0.00028027	3.3896	0.0015421	4.0056	0.0018224	454.96734246294574	42.184	1.4046	42.184	41.856	43.261	0					97	39	3	0	0	0	0.024876	1	4030	4030		3.026	1.6072	1	420670			25884	13629	17891	17928	29769	29769					0.2093932175887403
IKKSKNIKLKY	11	Unmodified	_IKKSKNIKLKY_					0	0	0		ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7426452636719	3	454.965895	1361.87586	-0.4085	-0.00018585	4.3062	0.0019592	3.8977	0.0017733	454.9676482151792	43.662	1.0697	43.662	43.113	44.183	0					69	29	4	0	0	0	0.024876	1	4030	4030		3.026	0.17417	1	457690			25885	13629	17891	17928	29770	29770					0.2093932175887403
IKKSKNIKLKY	11	Unmodified	_IKKSKNIKLKY_					0	0	0		ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	454.965895	1361.87586	-0.76681	-0.00034887	4.3554	0.0019816	3.5886	0.0016327	454.96776727679105	44.039	0.8098	43.895	43.353	44.162	-0.14471	0.056219	0.00030461	NaN	9.2118	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483410			25886	13629	17891	17928							0.2093932175887403
IKKSKNIKLKY	11	Unmodified	_IKKSKNIKLKY_					0	0	0		ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	454.965895	1361.87586	0.099038	4.5059E-05	3.7377	0.0017005	3.8367	0.0017456	454.9674107854547	43.921	0.82212	43.958	43.419	44.241	0.0369	0.11989	-0.00053852	NaN	9.2118	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490320			25887	13629	17891	17928							0.2093932175887403
IKKSREEH	8	Unmodified	_IKKSREEH_					0	0	0			REV__ENST00000416529.5_1_20:34322819-34327362:-|nuORF	REV__ENST00000416529.5_1_20:34322819-34327362:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7882080078125	2	513.788173	1025.56179	-0.49902	-0.00025639	-0.032296	-1.6594E-05	-0.53132	-0.00027299	513.7880377377146	27.755	1.0585	27.742	27.391	28.449	-0.012983					62	26	3	0	0	0	0.93274	1	1552	1552		47.916	3.5384	1	2847200	+		25888	32079	17892	17929	29771	29771					0.05003377049047231
IKKSREEH	8	Unmodified	_IKKSREEH_					0	0	0			REV__ENST00000416529.5_1_20:34322819-34327362:-|nuORF	REV__ENST00000416529.5_1_20:34322819-34327362:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7880859375	2	513.788173	1025.56179	-1.0884	-0.00055923	0.57614	0.00029601	-0.5123	-0.00026321	513.7883511015993	27.545	0.89135	27.626	27.357	28.249	0.081293					56	22	3	0	0	0	0.93274	1	1472	1472		47.916	0.25827	1	3177700	+		25889	32079	17892	17929	29772	29772					0.05003377049047231
IKKSRPREAQ	10	Unmodified	_IKKSRPREAQ_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;ENST00000475405.2_1_2:74274397-74300767:+|nuORF;nc|ENSG00000187605|O43151-3|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	607.82421875	2	606.862203	1211.70985	-0.75627	-0.00045895	-0.4346	-0.00026374	-1.1909	-0.00072269	606.8618246051881	85.124	2.1308	85.066	84.15	86.28	-0.057617					65	50	2	0	0	0	0.03519	1	10765	10765		6.3127	0	1	113560			25890	9640	17893	17930	29773	29773					0.11246688302890107
IKKTAASAF	9	Unmodified	_IKKTAASAF_					0	0	0			REV__ENST00000495743.1_1_X:16737946-16754363:+|nuORF	REV__ENST00000495743.1_1_X:16737946-16754363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.25469970703125	2	468.779285	935.544017	0.72036	0.00033769	-0.39789	-0.00018652	0.32247	0.00015117	468.778960604892	71.881	0.60652	71.593	71.193	71.8	-0.28857					36	15	3	0	0	0	0.024541	1	8681	8681		24.203	1.1603	1	570470	+		25891	26411	17894	17931	29774	29774					0.07366661794173979
IKKTFERL	8	Unmodified	_IKKTFERL_					0	0	0			REV__ENSG00000205328|ENST00000379665|OR6C65	REV__ENSG00000205328|ENST00000379665|OR6C65	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.8191528320312	2	517.821484	1033.62842	-1.1532	-0.00059714	-2.9121	-0.001508	-4.0653	-0.0021051	517.8198004944113	91.792	1.1119	91.792	91.425	92.537	0					81	26	5	0	0	0	0.96769	1	11626	11626		42.396	3.3746	1	1448700	+		25892	28672	17895	17932	29775	29775					0.11294612610936383
IKKTFERL	8	Unmodified	_IKKTFERL_					0	0	0			REV__ENSG00000205328|ENST00000379665|OR6C65	REV__ENSG00000205328|ENST00000379665|OR6C65	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.8193359375	2	517.821484	1033.62842	-0.45999	-0.00023819	-3.4532	-0.0017881	-3.9132	-0.0020263	517.8195675051055	91.848	1.1064	91.84	91.451	92.558	-0.0082932					74	26	4	0	0	0	1.0106	1	11597	11597		35.618	0.41757	1	1510800	+		25893	28672	17895	17932	29776	29776					0.11294612610936383
IKKTGVVFGAS	11	Unmodified	_IKKTGVVFGAS_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;RTN4|p.D1114Efs*4|1|0.15|ENSG00000115310|chr2:54982533-54982534|-/T|frameshift_variant;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8302001953125	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.0344	1	10819	10819		29.17	0.020503	1	5986700			25894	18190	17896	17933	29777	29777					0.10094577919812764
IKKVVIFGPER	11	Unmodified	_IKKVVIFGPER_					0	0	0			REV__nc|ENSG00000164830|Q8N573-2|OXR1	REV__nc|ENSG00000164830|Q8N573-2|OXR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	643.4034423828125	2	643.403173	1284.79179	1.1133	0.00071631	4.3758	0.0028154	5.4891	0.0035317	643.406068364471	104.31	0.59724	104.31	104.02	104.62	0.0031357					37	14	4	0	0	0	1.0557	1	13358	13358		23.523	0	1	372490	+		25895	36870	17897	17934	29778	29778					0.16078790662004394
IKLEEELR	8	Unmodified	_IKLEEELR_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3116455078125	2	515.300581	1028.58661	-0.13345	-6.8767E-05	-4.2354	-0.0021825	-4.3688	-0.0022512	515.2988540358348	20.193	0.33053	20.025	19.767	20.098	-0.16774					10	6	3	0	0	0	0.027866	1	508	508		71.296	0	1	76223			25896	7496	17898	17935	29779	29779					0.07346012131756652
IKLEVSGE	8	Unmodified	_IKLEVSGE_					0	0	0			REV__nc|ENSG00000149273|P23396-2|RPS3	REV__nc|ENSG00000149273|P23396-2|RPS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.8814697265625	2	437.74765	873.480748	-0.86933	-0.00038055	-3.8108	-0.0016682	-4.6801	-0.0020487	437.7445098962594	39.733	0.50386	39.621	39.363	39.867	-0.11223					17	13	2	0	0	0	0.027866	1	3416	3416		37.159	1.5408	1	131280	+		25897	36774	17899	17936	29780	29780					0.038946762862906326
IKLEWHSPWAV	11	Unmodified	_IKLEWHSPWAV_					0	0	0		nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8;ENST00000341617.7_1_7:126079175-126341814:-|nuORF;nc|ENSG00000196277|Q14831-5|GRM7;nc|ENSG00000196277|Q14831-3|GRM7;nc|ENSG00000196277|Q14831-4|GRM7;ENSG00000196277|ENST00000357716|GRM7;nc|ENSG00000196277|Q14831-2|GRM7	nc|ENSG00000179603|O00222-2|GRM8	nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.88763427734375	3	455.915312	1364.72411	-1.0199	-0.000465	1.8867	0.00086017	0.86677	0.00039517	455.916221146558	37.822	0.37106	37.604	37.384	37.755	-0.21848					19	9	3	0	0	0	0.024322	1	3076	3076		65.278	0	1	165910			25898	8909	17900	17937	29781	29781					0.0563334073117403
IKLEYYFPF	9	Unmodified	_IKLEYYFPF_					0	0	0			REV__nc|ENSG00000068615|Q9H902-2|REEP1	REV__nc|ENSG00000068615|Q9H902-2|REEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.24481201171875	3	407.218109	1218.6325	-0.17937	-7.3041E-05	0.80031	0.0003259	0.62095	0.00025286	408.2222395032888	35.67	0.54425	35.455	35.062	35.606	-0.21555					27	13	4	0	0	0	0.024541	1	2714	2714		24.519	7.0512	1	104320	+		25899	20381	17901	17938	29782	29782					0.031926573139799075
IKLFLRGRPSV	11	Unmodified	_IKLFLRGRPSV_					0	0	0		ENST00000479185.1_1_2:218746916-218750490:-|nuORF	ENST00000479185.1_1_2:218746916-218750490:-|nuORF	ENST00000479185.1_1_2:218746916-218750490:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	643.400634765625	2	643.408789	1284.80303	0.35482	0.00022829	-3.8136	-0.0024537	-3.4588	-0.0022254	643.4065276479043	104.41	0.52249	104.41	104.14	104.67	-0.0032196					36	12	4	0	0	0	1.0017	1	13319	13319		36.447	1.2947	1	413010			25900	15166	17902	17939	29783	29783					0.17201612756116447
IKLFLRGRPSV	11	Unmodified	_IKLFLRGRPSV_					0	0	0		ENST00000479185.1_1_2:218746916-218750490:-|nuORF	ENST00000479185.1_1_2:218746916-218750490:-|nuORF	ENST00000479185.1_1_2:218746916-218750490:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	643.408789	1284.80303	0.9058	0.0005828	-4.1544	-0.002673	-3.2486	-0.0020902	643.4061591945805	104.35	0.53953	104.35	104.03	104.57	0	0.025025	-0.00061146	NaN	36.447	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496070			25901	15166	17902	17939							0.17201612756116447
IKLGRVLSP	9	Unmodified	_IKLGRVLSP_					0	0	0			REV__ENST00000557041.1_1_14:20928931-20929147:-|nuORF	REV__ENST00000557041.1_1_14:20928931-20929147:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.8238525390625	2	491.824027	981.633501	-0.70878	-0.00034859	0.30612	0.00015056	-0.40266	-0.00019804	491.8241502379091	70.19	0.90935	69.922	69.327	70.237	-0.26724					59	21	5	0	0	0	0.072054	1	8156	8156		120.62	14.206	1	8489700	+		25902	35057	17903	17940	29784	29784					0.14194916473547892
IKLGRVLSP	9	Unmodified	_IKLGRVLSP_					0	0	0			REV__ENST00000557041.1_1_14:20928931-20929147:-|nuORF	REV__ENST00000557041.1_1_14:20928931-20929147:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.8240051269531	2	491.824027	981.633501	0.088461	4.3507E-05	-0.49122	-0.00024159	-0.40276	-0.00019809	491.8237772370958	70.049	0.73724	69.799	69.483	70.22	-0.25063					55	17	4	0	0	0	0.16468	1	8157	8157		96.19	2.184	1	9033600	+		25903	35057	17903	17940	29785	29785					0.14194916473547892
IKLGSKSEKN	10	Unmodified	_IKLGSKSEKN_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.7799682617188	2	552.324588	1102.63462	-0.89563	-0.00049468	3.3952	0.0018753	2.4996	0.0013806	552.3270575047652	44.996	0.588	44.896	44.633	45.221	-0.099449					36	15	3	0	0	0	0.03519	1	4289	4289		56.434	0	1	313660	+		25904	22204	17904	17941	29786	29786					0.08741086051804814
IKLGWLNQQL	10	Unmodified	_IKLGWLNQQL_					0	0	0			REV__ENSG00000145191|ENST00000648915|EIF2B5	REV__ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.9066162109375	3	404.908157	1211.70264	0.77879	0.00031534	-4.3561	-0.0017638	-3.5774	-0.0014485	404.90639899175994	22.71	0.97486	22.71	22.385	23.36	0					63	21	4	0	0	0	0.65479	1	822	822		70.816	2.1904	1	1523400	+		25905	24385	17905	17942	29787	29787					0.10525955702473766
IKLGWLNQQL	10	Unmodified	_IKLGWLNQQL_					0	0	0			REV__ENSG00000145191|ENST00000648915|EIF2B5	REV__ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.9062805175781	3	404.908157	1211.70264	0.23488	9.5104E-05	-3.7987	-0.0015381	-3.5639	-0.001443	404.9066402890256	22.752	0.88935	22.676	22.363	23.253	-0.075296					57	19	4	0	0	0	0.83673	1	808	808		58.23	8.1964	1	1793400	+		25906	24385	17905	17942	29788	29788					0.10525955702473766
IKLIAAAIH	9	Unmodified	_IKLIAAAIH_					0	0	0			REV__ENSG00000170790|ENST00000641461|OR10A2	REV__ENSG00000170790|ENST00000641461|OR10A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.29052734375	2	475.313295	948.612037	0.59187	0.00028132	-0.60513	-0.00028763	-0.013264	-6.3045E-06	475.3129256148951	19.1	0.49428	18.896	18.708	19.202	-0.20371					14	9	2	0	0	0	0.024443	1	371	371		35.201	6.9464	1	62527	+		25907	26505	17906	17943	29789	29789					0.1356753144484628
IKLISLVIN	9	Unmodified	_IKLISLVIN_					0	0	0			REV__ENSG00000172487|ENST00000533152|OR8J1	REV__ENSG00000172487|ENST00000533152|OR8J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3030700683594	2	506.841885	1011.66922	-0.080076	-4.0586E-05	-0.63494	-0.00032181	-0.71501	-0.0003624	506.84145730314856	46.724	0.48806	46.724	46.515	47.003	0					31	12	3	0	0	0	0.024292	1	4667	4667		40.778	22.454	1	964680	+		25908	26677	17907	17944	29790	29790					0.16384953930548818
IKLIVGRPR	9	Unmodified	_IKLIVGRPR_					0	0	0		ENST00000527793.1_1_8:38124719-38126401:-|nuORF;nc|ENSG00000147535|Q8NEB5-4|PLPP5;nc|ENSG00000147535|Q8NEB5-2|PLPP5;nc|ENSG00000147535|Q8NEB5-3|PLPP5;ENSG00000147535|ENST00000424479|PLPP5;ENSG00000203805|ENST00000398250|PLPP4	ENST00000527793.1_1_8:38124719-38126401:-|nuORF	ENST00000527793.1_1_8:38124719-38126401:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7550659179688	2	526.358568	1050.70258	1.4634	0.0007703	3.6216	0.0019063	5.0851	0.0026766	526.3603253607713	36.355	1.0304	36.157	35.979	37.01	-0.19829					63	25	3	0	0	0	0.024541	1	2910	2910		6.3127	0	1	374530			25909	5975	17908	17945	29791	29791					0.1792600049311659
IKLKKRVF	8	Unmodified	_IKLKKRVF_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3140258789062	2	516.358037	1030.70152	0.29416	0.00015189	0.63708	0.00032896	0.93124	0.00048085	516.3601557122888	97.947	0.29103	97.957	97.771	98.062	0.010231					12	6	3	0	0	0	0.027866	1	12453	12453		13.775	0.81615	1	75862			25910	7703	17909	17946	29792	29792					0.18739786124228885
IKLLDFEHAD	10	Unmodified	_IKLLDFEHAD_					0	0	0			REV__ENSG00000198839|ENST00000361822|ZNF277	REV__ENSG00000198839|ENST00000361822|ZNF277	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.8659362792969	3	400.880156	1199.61864	0.61356	0.00024597	-2.4465	-0.00098075	-1.8329	-0.00073478	401.21292833956755	42.529	2.4864	42.406	41.385	43.871	-0.12299					105	66	3	0	0	0	0.03519	1	4069	4069		11.097	1.9139	1	321070	+		25911	28495	17910	17947	29793	29793					0.02681379814907814
IKLLKLTA	8	Unmodified	_IKLLKLTA_					0	0	0			REV__ENST00000455321.1_1_10:52486845-52487529:-|nuORF	REV__ENST00000455321.1_1_10:52486845-52487529:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26873779296875	2	450.318046	898.621539	-0.85258	-0.00038393	-4.4432	-0.0020009	-5.2958	-0.0023848	450.31642562441033	37.983	0.30732	37.901	37.743	38.05	-0.082516					13	8	3	0	0	0	0.027866	1	3145	3145		47.916	22.465	1	409440	+		25912	25718	17911	17948	29794	29794					0.16817299730348623
IKLLKLTA	8	Unmodified	_IKLLKLTA_					0	0	0			REV__ENST00000455321.1_1_10:52486845-52487529:-|nuORF	REV__ENST00000455321.1_1_10:52486845-52487529:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.318046	898.621539	-1.015	-0.00045706	-6.1016	-0.0027476	-7.1165	-0.0032047	450.3135191846632	38.09	0.23048	38.09	37.936	38.166	0	0.094592	-0.00061362	NaN	47.916	9	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131260	+		25913	25718	17911	17948							0.16817299730348623
IKLLLIHNDPE	11	Unmodified	_IKLLLIHNDPE_					0	0	0			REV__ENST00000409642.7_2_2:149987458-150061772:+|nuORF	REV__ENST00000409642.7_2_2:149987458-150061772:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.2737731933594	3	435.590605	1303.74999	-0.27713	-0.00012072	0.89009	0.00038772	0.61296	0.000267	435.92530287701885	60.71	0.36641	60.504	60.254	60.62	-0.20599					14	8	2	0	0	0	0.024735	1	6743	6743		27.644	2.5179	1	142710	+		25914	31968	17912	17949	29795	29795					0.11026190182815299
IKLLLIHNDPE	11	Unmodified	_IKLLLIHNDPE_					0	0	0			REV__ENST00000409642.7_2_2:149987458-150061772:+|nuORF	REV__ENST00000409642.7_2_2:149987458-150061772:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.2738037109375	3	435.590605	1303.74999	-0.31276	-0.00013624	0.64018	0.00027886	0.32742	0.00014262	435.9249273517936	60.837	0.40302	60.584	60.294	60.697	-0.25373					14	9	2	0	0	0	0.02477	1	6734	6734		12.433	0	1	87878	+		25915	31968	17912	17949	29796	29796					0.11026190182815299
IKLLPNVVTLQ	11	Unmodified	_IKLLPNVVTLQ_					0	0	0		FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.3972778320312	2	619.397556	1236.78056	-1.2093	-0.00074906	0.23426	0.0001451	-0.97508	-0.00060396	619.397594105962	52.089	0.51806	52.181	51.967	52.486	0.091938					37	12	4	0	0	0	1.0183	1	5492	5492		32.751	2.4328	1	2016900			25916	17663	17913	17950	29797	29797					0.17163968567842858
IKLLPNVVTLQ	11	Unmodified	_IKLLPNVVTLQ_					0	0	0		FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	619.397556	1236.78056	-0.66079	-0.00040929	0.25781	0.00015969	-0.40298	-0.0002496	619.3975059145729	52.421	0.39994	52.421	52.311	52.711	0	0.079443	0.00026271	NaN	32.751	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97906			25917	17663	17913	17950							0.17163968567842858
IKLLPNVVTLQ	11	Unmodified	_IKLLPNVVTLQ_					0	0	0		FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	FTSJ3|p.P82L|1|0.57|ENSG00000108592|chr17:63826111-63826111|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	619.397556	1236.78056	0.54868	0.00033985	-1.3149	-0.00081446	-0.76625	-0.00047461	619.3964636892991	52.57	0.39742	52.422	52.209	52.607	-0.14723	0.08113	-0.0016856	NaN	32.751	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109930			25918	17663	17913	17950							0.17163968567842858
IKLLPPLTR	9	Unmodified	_IKLLPPLTR_					0	0	0			REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.7744750976562	2	525.855327	1049.6961	-1.2053	-0.00063381	1.4871	0.00078201	0.28182	0.0001482	526.3577579450799	80.565	0.42357	80.414	80.174	80.598	-0.15168					11	9	2	0	0	0	0.024523	1	9973	9973		21.96	14.27	1	46463	+		25919	36363	17914	17951	29798	29798					0.1732406254172929
IKLLRETL	8	Unmodified	_IKLLRETL_					0	0	0			REV__nc|ENSG00000232872|Q8IX95|CTAGE3P	REV__nc|ENSG00000232872|Q8IX95|CTAGE3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.30572509765625	2	493.32386	984.633166	1.3949	0.00068812	-2.3591	-0.0011638	-0.96424	-0.00047568	493.32344399962386	59.379	0.14547	59.179	59.099	59.245	-0.20016					6	3	2	0	0	0	0.027866	1	6750	6750		30.504	0	1	45415	+		25920	37148	17915	17952	29799	29799					0.14023496753691234
IKLNIPPYKN	10	Unmodified	_IKLNIPPYKN_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	599.8097534179688	2	600.360973	1198.70739	-0.77851	-0.00046738	-0.5278	-0.00031687	-1.3063	-0.00078426	600.3605752204058	76.498	0.24736	76.51	76.405	76.653	0.011635					6	5	2	0	0	0	0.03519	1	9347	9347		26.693	9.3279	1	52262	+		25921	28706	17916	17953	29800	29800					0.11598839845237308
IKLQATIPRLR	11	Unmodified	_IKLQATIPRLR_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8819580078125	3	436.95399	1307.84014	0.37352	0.00016321	-2.6248	-0.0011469	-2.2513	-0.0009837	436.9542927505941	39.728	0.42046	39.498	39.313	39.733	-0.23021					21	10	3	0	0	0	0.024797	1	3375	3375		55.721	19.403	1	207250	+		25922	22285	17917	17954	29801	29801					0.198532843018711
IKLRSLPE	8	Unmodified	_IKLRSLPE_					0	0	0			REV__ENST00000374199.8_1_9:116054008-116054197:+|nuORF	REV__ENST00000374199.8_1_9:116054008-116054197:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.3009948730469	2	478.300384	954.586216	-0.60152	-0.00028771	-0.32955	-0.00015762	-0.93106	-0.00044533	478.30016845288947	37.854	1.6328	37.854	37.269	38.902	0					100	45	4	0	0	0	0.50239	1	3152	3152		85.359	5.4203	1	16605000	+		25923	31288	17918	17955	29802	29802					0.10710637202566886
IKLRSLPE	8	Unmodified	_IKLRSLPE_					0	0	0			REV__ENST00000374199.8_1_9:116054008-116054197:+|nuORF	REV__ENST00000374199.8_1_9:116054008-116054197:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	478.300384	954.586216	-1.0606	-0.0005073	-0.16764	-8.0183E-05	-1.2283	-0.00058749	478.3002496219315	37.978	1.6944	38.005	37.372	39.067	0.027275					110	46	4	0	0	0	0.27973	3	3044	3044;3061;3083		120.62	8.9727	1	13748000	+		25924	31288	17918	17955	29803;29804;29805	29803					0.10710637202566886
IKLTPQIHML	10	Unmodified	_IKLTPQIHML_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.3592529296875	2	597.357376	1192.7002	0.26734	0.00015969	2.0641	0.001233	2.3314	0.0013927	597.3584820835335	98.719	1.4456	98.583	98.147	99.592	-0.13625					99	34	4	0	0	0	1.118	1	12200	12200		30.318	1.1477	1	2905600			25925	3446	17919	17956	29806	29806					0.11155783973163125
IKLTQPEIDLI	11	Unmodified	_IKLTQPEIDLI_					0	0	0			REV__ENST00000491955.5_1_X:154007454-154010087:-|nuORF	REV__ENST00000491955.5_1_X:154007454-154010087:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.882080078125	2	641.884478	1281.7544	0.34308	0.00022022	-3.5873	-0.0023026	-3.2442	-0.0020824	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	0.97926	1	11693	11693		41.427	8.6142	1	1209200	+		25926	23163	17920	17957	29807	29807					0.12479654605704127
IKLVIREQ	8	Unmodified	_IKLVIREQ_					0	0	0			REV__RGS22|p.L1223V|1|0.1|ENSG00000132554|chr8:99962927-99962927|G/C|missense_variant	REV__RGS22|p.L1223V|1|0.1|ENSG00000132554|chr8:99962927-99962927|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7961730957031	2	499.821484	997.628415	-0.24278	-0.00012134	1.2536	0.00062658	1.0108	0.00050524	499.822107128767	66.724	0.29582	66.754	66.565	66.861	0.030106					11	6	2	0	0	0	0.027866	1	7871	7871		21.96	1.013	1	1078600	+		25927	37437	17921	17958	29808	29808					0.1295061261095043
IKLYQPFSFS	10	Unmodified	_IKLYQPFSFS_					0	0	0			REV__CON__Q2YDI2	REV__CON__Q2YDI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.52471923828125	3	410.557013	1228.64921	-0.47059	-0.0001932	-2.8242	-0.0011595	-3.2948	-0.0013527	410.88967586298384	55.121	0.21698	54.975	54.873	55.09	-0.14609					9	5	2	0	0	0	0.03519	1	5890	5890		10.587	0.44226	1	51109	+	+	25928	19580	17922	17959	29809	29809					0.04403158199943391
IKMKLTSEL	9	Unmodified	_IKMKLTSEL_					0	0	0			REV__ENST00000371045.9_1_1:66827438-66828866:+|nuORF	REV__ENST00000371045.9_1_1:66827438-66828866:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8168334960938	2	531.81501	1061.61547	0.26845	0.00014276	3.082	0.001639	3.3504	0.0017818	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.87448	1	10476	10476		34.173	2.6427	1	1303400	+		25929	31148	17923	17960	29810	29810					0.08712413436524002
IKMQSHVEL	9	Unmodified	_IKMQSHVEL_					0	0	0		ENST00000490729.1_1_12:119175913-119176300:-|nuORF	ENST00000490729.1_1_12:119175913-119176300:-|nuORF	ENST00000490729.1_1_12:119175913-119176300:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.3099365234375	2	542.794609	1083.57467	-0.25122	-0.00013636	0.86633	0.00047024	0.6151	0.00033388	542.7951907456194	71.179	0.63522	70.922	70.651	71.286	-0.25713					26	14	3	0	0	0	0.024319	1	8285	8285		66.429	3.123	1	405050			25930	15438	17924	17961	29811	29811					0.036220721169229364
IKMRPYDA	8	Unmodified	_IKMRPYDA_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2622375488281	2	497.262945	992.511337	-0.97259	-0.00048363	-0.46188	-0.00022968	-1.4345	-0.00071331	497.262694898755	44.149	1.7048	44.044	43.544	45.249	-0.10468					128	45	5	0	0	0	0.6536	1	4127	4127		71.296	0	1	26568000			25931	10518	17925	17962	29812	29812					0.01478131399665017
IKMRPYDA	8	Unmodified	_IKMRPYDA_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2625732421875	2	497.262945	992.511337	-0.60669	-0.00030169	0.3391	0.00016862	-0.26759	-0.00013306	497.2629896396473	48.345	6.1114	48.248	45.849	51.96	-0.097553					376	164	4	0	0	0	0.53523	6	4794	4776;4794;4806;4816;4866;4920		82.305	21.333	1	6694800			25932	10518	17925	17962	29813;29814;29815;29816;29817;29818	29814					0.01478131399665017
IKMRPYDA	8	Unmodified	_IKMRPYDA_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2623291015625	2	497.262945	992.511337	-0.92701	-0.00046097	-0.45996	-0.00022872	-1.387	-0.00068969	497.26266559054324	44.306	1.5544	44.062	43.711	45.266	-0.2444					122	41	5	0	0	0	0.6248	2	4119	4107;4119		73.975	10.324	1	25420000			25933	10518	17925	17962	29819;29820	29820					0.01478131399665017
IKMRPYDA	8	Unmodified	_IKMRPYDA_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2624816894531	2	497.262945	992.511337	-0.59944	-0.00029808	0.31739	0.00015783	-0.28205	-0.00014025	497.26295675594787	48.648	6.2116	48.373	45.762	51.974	-0.27598					392	167	4	0	0	0	0.6536	2	4858	4831;4858		71.296	13.078	1	7013000			25934	10518	17925	17962	29821;29822	29822					0.01478131399665017
IKMRPYDA	8	Unmodified	_IKMRPYDA_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2623596191406	2	497.262945	992.511337	-1.1969	-0.00059516	0.033048	1.6433E-05	-1.1638	-0.00057873	497.2628922867642	44.307	1.5271	44.087	43.749	45.276	-0.21938					120	41	5	0	0	0	0.6536	2	4096	4096;4131		71.296	2.811	1	26614000			25935	10518	17925	17962	29823;29824	29823					0.01478131399665017
IKMRPYDA	8	Unmodified	_IKMRPYDA_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2630920410156	2	497.262945	992.511337	-0.17985	-8.9431E-05	-0.29417	-0.00014628	-0.47402	-0.00023571	497.26276530146424	48.49	5.7611	48.308	45.839	51.6	-0.18206					294	155	2	0	0	0	0.53523	4	4895	4780;4845;4870;4895		82.305	11.009	1	7142700			25936	10518	17925	17962	29825;29826;29827;29828	29828					0.01478131399665017
IKNAPPGKKY	10	Unmodified	_IKNAPPGKKY_					0	0	0		ENSG00000165782|ENST00000250489|PIP4P1;nc|ENSG00000165782|Q86T03-2|PIP4P1	ENSG00000165782|ENST00000250489|PIP4P1	ENSG00000165782|ENST00000250489|PIP4P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3319702148438	2	558.332216	1114.64988	0.33786	0.00018864	-0.40493	-0.00022608	-0.067069	-3.7447E-05	558.3319252829885	59.395	0.98627	59.206	58.897	59.883	-0.18885					73	24	5	0	0	0	1.0393	1	6583	6583		40.778	0	1	5632800			25937	7466	17926	17963	29829	29829					0.0971399763966474
IKNEVQEVK	9	Unmodified	_IKNEVQEVK_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.810791015625	2	543.811313	1085.60807	-1.0481	-0.00056999	-0.11497	-6.2524E-05	-1.1631	-0.00063252	543.8112096698534	44.015	1.3038	43.911	43.363	44.667	-0.10468					83	34	5	0	0	0	0.014918	1	4074	4074		162.25	8.1341	1	9210600			25938	4071	17927	17964	29830	29830					0.06869397160448898
IKNGKLKRQQ	10	Unmodified	_IKNGKLKRQQ_					0	0	0			REV__ENSG00000183542|ENST00000309384|KLRC4	REV__ENSG00000183542|ENST00000309384|KLRC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	404.922689	1211.74624	-0.99259	-0.00040192	0.60463	0.00024483	-0.38797	-0.0001571	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.1295	1	1353	1353		26.063	0.9374	1	42819000	+		25939	27580	17928	17965	29831	29831					0.14883565199602344
IKNGKSDVETR	11	Unmodified	_IKNGKSDVETR_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.2316589355469	3	416.229848	1245.66771	0.055213	2.2981E-05	4.0496	0.0016856	4.1048	0.0017086	416.2315842412846	20.954	2.1418	20.777	20.336	22.478	-0.17721					111	44	6	0	0	0	0.98069	1	610	610		41.109	7.1874	1	3025500	+		25940	36829	17929	17966	29832	29832					0.05470668103839671
IKNHLWGLE	9	Unmodified	_IKNHLWGLE_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2892456054688	2	555.308741	1108.60293	0.34982	0.00019426	-1.5215	-0.00084488	-1.1716	-0.00065063	555.3078636457983	67.7	0.50005	67.7	67.408	67.908	0					21	12	2	0	0	0	0.02435	1	8051	8051		51.335	5.3632	1	272220	+		25941	22880	17930	17967	29833	29833					0.052971380884855535
IKNKNKPLY	9	Unmodified	_IKNKNKPLY_					0	0	0			REV__ENSG00000162434|ENST00000342505|JAK1	REV__ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2647705078125	2	559.340041	1116.66553	-0.60717	-0.00033962	3.8554	0.0021565	3.2482	0.0018169	559.342419026919	82.939	0.93693	82.966	82.575	83.512	0.026558					38	21	3	0	0	0	0.024412	1	10254	10254		31.955	2.8053	1	103740	+		25942	25441	17931	17968	29834	29834					0.11186284156701731
IKNLGTNQC	9	Unmodified	_IKNLGTNQC_					0	0	0		ENST00000603680.5_1_12:51748165-51753149:-|nuORF;ENSG00000139629|ENST00000356317|GALNT6	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	ENST00000603680.5_1_12:51748165-51753149:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.75482177734375	2	495.755484	989.496415	3.9708	0.0019685	-3.6991	-0.0018338	0.27171	0.0001347	495.75350033943033	18.564	1.2894	18.627	18.097	19.386	0.063307					38	26	2	0	0	0	1.0233	1	230	230		15.642	0.97771	1	27632			25943	5350	17932	17969	29835	29835					0.0012463953169117303
IKNNNMELNL	10	Unmodified	_IKNNNMELNL_					0	0	0			REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	401.544779	1201.61251	0.94894	0.00038104	3.1326	0.0012579	4.0816	0.0016389	402.21676898299194	23.06	0.79208	22.858	22.361	23.153	-0.20193					30	16	3	0	0	0	0.03519	1	854	854		20.03	0	1	20947	+		25944	25107	17933	17970	29836	29836					0.019765383117373858
IKNRCYGGLW	10	Unmodified	_IKNRCYGGLW_					0	0	0		nc|ENSG00000132376|Q9BT40-2|INPP5K;ENST00000350761.9_1_17:1399119-1419845:-|nuORF;ENSG00000132376|ENST00000421807|INPP5K	nc|ENSG00000132376|Q9BT40-2|INPP5K	nc|ENSG00000132376|Q9BT40-2|INPP5K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5721740722656	3	403.878092	1208.61245	0.54358	0.00021954	3.5693	0.0014416	4.1129	0.0016611	403.8786341802435	42.779	0.22709	42.542	42.452	42.679	-0.23736					7	5	2	0	0	0	0.03519	1	3880	3880		42.864	5.3561	1	32096			25945	4598	17934	17971	29837	29837					0.016485831023828723
IKPASHDC	8	Unmodified	_IKPASHDC_					0	0	0			REV__nc|ENSG00000168297|Q7Z7A4-3|PXK	REV__nc|ENSG00000168297|Q7Z7A4-3|PXK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2874450683594	2	435.710545	869.406537	-0.4273	-0.00018618	2.6978	0.0011754	2.2705	0.00098927	435.71196315527664	26.415	1.3386	26.252	25.758	27.097	-0.16331					62	35	2	0	0	0	0.027866	1	1251	1251		50.025	5.9077	1	262040	+		25946	26246	17935	17972	29838	29838					-0.03338990076883874
IKPASHDC	8	Unmodified	_IKPASHDC_					0	0	0			REV__nc|ENSG00000168297|Q7Z7A4-3|PXK	REV__nc|ENSG00000168297|Q7Z7A4-3|PXK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2874450683594	2	435.710545	869.406537	-0.36649	-0.00015968	1.865	0.0008126	1.4985	0.00065291	435.710684435071	25.816	0.54288	25.644	25.282	25.825	-0.17151					20	12	2	0	0	0	0.027866	1	1251	1251		50.025	5.9077	1	54108	+		25947	26246	17935	17972	29839	29839					-0.03338990076883874
IKPDDYAVV	9	Unmodified	_IKPDDYAVV_					0	0	0			REV__nc|ENSG00000091127|Q96PZ0-2|PUS7	REV__nc|ENSG00000091127|Q96PZ0-2|PUS7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2735290527344	2	510.274032	1018.53351	-0.32944	-0.0001681	0.91275	0.00046575	0.58331	0.00029765	510.2742095600325	75.715	0.98311	75.443	75.06	76.043	-0.27266					59	24	4	0	0	0	0.6504	1	8945	8945		49.442	3.4693	1	1696200	+		25948	20898	17936	17973	29840	29840					0.02498634349092299
IKPGDSLLLSV	11	Unmodified	_IKPGDSLLLSV_					0	0	0		ENSG00000174579|ENST00000309993|MSL2;nc|ENSG00000174579|Q9HCI7-2|MSL2	ENSG00000174579|ENST00000309993|MSL2	ENSG00000174579|ENST00000309993|MSL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2536010742188	2	571.344989	1140.67542	-0.29238	-0.00016705	2.6298	0.0015025	2.3374	0.0013355	571.8477821511418	52.601	0.23805	52.474	52.273	52.511	-0.12705					12	5	3	0	0	0	0.024736	1	5452	5452		22.58	0	1	99191			25949	8483	17937	17974	29841	29841					0.11071427371439313
IKPKLEMI	8	Unmodified	_IKPKLEMI_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000490900.1_1_1:230823828-230823903:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.30328369140625	2	486.301539	970.588524	1.0621	0.00051651	2.5061	0.0012187	3.5682	0.0017352	486.3027620073508	20.166	0.72841	19.97	19.657	20.385	-0.19577					32	14	4	0	0	0	1.0009	1	510	510		37.159	1.5408	1	584810			25950	4932	17938	17975	29842	29842					0.10205349616023796
IKPKPKKPTDL	11	Unmodified	_IKPKPKKPTDL_					0	0	0		ENST00000442440.1_1_20:23337427-23338640:-|nuORF	ENST00000442440.1_1_20:23337427-23338640:-|nuORF	ENST00000442440.1_1_20:23337427-23338640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5925598144531	3	422.271096	1263.79146	-0.58206	-0.00024579	-3.5277	-0.0014896	-4.1097	-0.0017354	422.6040590500219	49.997	0.64775	49.997	49.694	50.341	0					36	18	3	0	0	0	0.024727	1	5153	5153		17.833	10.433	1	279590			25951	14381	17939	17976	29843	29843					0.17011370942122994
IKPKSQHVNL	10	Unmodified	_IKPKSQHVNL_					0	0	0		ENST00000545708.5_1_1:93575884-93575938:+|nuORF	ENST00000545708.5_1_1:93575884-93575938:+|nuORF	ENST00000545708.5_1_1:93575884-93575938:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3486328125	2	582.348397	1162.68224	-0.64676	-0.00037664	0.24104	0.00014037	-0.40571	-0.00023627	582.3485609557453	18.591	0.73649	18.46	18.154	18.891	-0.13147					32	14	3	0	0	0	1.0816	1	311	311		35.152	3.6222	1	77672			25952	16493	17940	17977	29844	29844					0.10740785042662537
IKPLLGMN	8	Unmodified	_IKPLLGMN_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.26666259765625	2	443.264956	884.515359	0.094754	4.2001E-05	4.4667	0.0019799	4.5614	0.0020219	443.2668579656422	85.931	1.078	85.736	85.386	86.464	-0.19507					68	24	4	0	0	0	0.99042	1	10407	10407		38.806	6.8513	1	1006800			25953	9236	17941	17978	29845	29845					0.06848220893391499
IKPNRDYF	8	Unmodified	_IKPNRDYF_					0	0	0		ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2950439453125	2	526.779816	1051.54508	-0.27778	-0.00014633	4.3276	0.0022797	4.0498	0.0021334	526.7811537442391	54.004	0.59377	53.857	53.748	54.342	-0.14723					30	16	2	0	0	0	0.027866	1	5866	5866		38.806	16.846	1	675820			25954	8025	17942	17979	29846	29846					0.02136876163058332
IKPPVIKLL	9	Unmodified	_IKPPVIKLL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8442687988281	2	510.862621	1019.71069	0.073014	3.73E-05	1.5419	0.00078769	1.6149	0.00082499	510.8634803592007	76.175	0.85904	76.186	75.752	76.611	0.011635					36	21	2	0	0	0	0.024541	1	9335	9335		31.955	11.473	1	458600			25955	4429	17943	17980	29847	29847					0.2016213468988326
IKPPVIKLL	9	Unmodified	_IKPPVIKLL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.8442687988281	2	510.862621	1019.71069	-0.20995	-0.00010725	-0.56362	-0.00028793	-0.77356	-0.00039519	510.86246894776804	76.378	0.24279	76.11	75.968	76.211	-0.26806					10	5	3	0	0	0	0.024541	1	9044	9044		31.955	13.63	1	129220			25956	4429	17943	17980	29848	29848					0.2016213468988326
IKPPVIKLL	9	Unmodified	_IKPPVIKLL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.8441467285156	2	510.862621	1019.71069	-0.00069526	-3.5518E-07	0.33395	0.0001706	0.33325	0.00017025	510.8641146829899	76.064	0.62413	75.896	75.514	76.138	-0.16854					26	15	3	0	0	0	0.024487	1	8963	8963		24.203	11.244	1	117910			25957	4429	17943	17980	29849	29849					0.2016213468988326
IKPQAEVF	8	Unmodified	_IKPQAEVF_					0	0	0			REV__ENSG00000132703|ENST00000255040|APCS	REV__ENSG00000132703|ENST00000255040|APCS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7844543457031	2	466.26601	930.517468	-1.2018	-0.00056035	-3.0546	-0.0014242	-4.2563	-0.0019846	466.26477117013985	44.201	0.78719	44.201	43.8	44.587	0					26	22	2	0	0	0	0.027866	1	4263	4263		30.504	3.7075	1	178740	+		25958	23313	17944	17981	29850	29850					0.04942972902847487
IKQARTAVG	9	Unmodified	_IKQARTAVG_					0	0	0		nc|ENSG00000168566|Q6IEG0-2|SNRNP48;ENSG00000168566|ENST00000342415|SNRNP48	nc|ENSG00000168566|Q6IEG0-2|SNRNP48	nc|ENSG00000168566|Q6IEG0-2|SNRNP48	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2877197265625	2	472.287808	942.561064	-0.32971	-0.00015572	-0.19839	-9.3697E-05	-0.5281	-0.00024942	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.90698	1	11746	11746		31.955	6.5047	1	42351000			25959	7840	17945	17982	29851	29851					0.0874858239999412
IKQGIQNL	8	Unmodified	_IKQGIQNL_					0	0	0		ENSG00000183389|ENST00000641156|OR56A4;ENSG00000188691|ENST00000532411|OR56A5	ENSG00000183389|ENST00000641156|OR56A4	ENSG00000183389|ENST00000641156|OR56A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.77984619140625	2	457.276909	912.539266	-0.58953	-0.00026958	-1.5092	-0.00069012	-2.0987	-0.0009597	457.2758344155539	48.978	0.73909	48.698	48.501	49.24	-0.27977					23	19	2	0	0	0	0.027866	1	4951	4951		55.504	0	1	308600			25960	9223	17946	17983	29852	29852					0.07949777651424483
IKQHKKKPL	9	Unmodified	_IKQHKKKPL_					0	0	0			REV__ENSG00000156006|ENST00000286479|NAT2	REV__ENSG00000156006|ENST00000286479|NAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.3400268554688	2	560.371675	1118.7288	-0.074914	-4.198E-05	1.492	0.00083607	1.4171	0.00079409	560.3726251155346	101.34	0.32359	101.17	100.96	101.28	-0.17178					10	6	2	0	0	0	0.024506	1	12550	12550		23.042	0	1	39309	+		25961	25044	17947	17984	29853	29853					0.17418269664608488
IKQIASSVIR	10	Unmodified	_IKQIASSVIR_					0	0	0			REV__ENST00000589630.1_1_18:32822565-32822742:+|nuORF	REV__ENST00000589630.1_1_18:32822565-32822742:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.8508911132812	2	557.850773	1113.68699	-0.82011	-0.0004575	0.73636	0.00041078	-0.083752	-4.6721E-05	557.8510290409305	26.764	0.62298	26.6	26.344	26.967	-0.16331					41	14	4	0	0	0	1.0002	1	1404	1404		45.972	8.8131	1	868620	+		25962	35681	17948	17985	29854	29854					0.1346966918540602
IKQLLSEL	8	Unmodified	_IKQLLSEL_					0	0	0		nc|ENSG00000147010|Q96B97-3|SH3KBP1;nc|ENSG00000147010|Q96B97-2|SH3KBP1;ENSG00000147010|ENST00000397821|SH3KBP1	nc|ENSG00000147010|Q96B97-3|SH3KBP1	nc|ENSG00000147010|Q96B97-3|SH3KBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2952880859375	2	472.294768	942.574983	-0.26182	-0.00012365	-2.3004	-0.0010865	-2.5622	-0.0012101	472.295419182812	54.997	1.1824	55.095	54.525	55.707	0.098015					76	32	4	0	0	0	0.35998	1	5972	5972		102.77	11.997	1	3588300			25963	5924	17949	17986	29855	29855					0.10139815108414041
IKQMLMSNN	9	Unmodified	_IKQMLMSNN_					0	0	0			REV__ENST00000461448.5_1_1:28905087-28906119:-|nuORF	REV__ENST00000461448.5_1_1:28905087-28906119:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7927856445312	2	539.772819	1077.53109	-0.16096	-8.6879E-05	0.38411	0.00020733	0.22316	0.00012045	540.2729737825957	78.635	0.37465	78.443	78.216	78.591	-0.1921					10	8	2	0	0	0	0.024477	1	9681	9681		35.618	14.671	1	82032	+		25964	32878	17950	17987	29856	29856					-0.004578606518407469
IKQPDLGNL	9	Unmodified	_IKQPDLGNL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2926330566406	2	499.287474	996.560395	-0.7378	-0.00036838	0.38619	0.00019282	-0.35161	-0.00017555	499.2868955818331	47.589	0.50628	47.648	47.389	47.895	0.059097					39	15	5	0	0	0	0.024292	1	4687	4687		49.442	8.6634	1	1326400	+		25965	31835	17951	17988	29857	29857					0.061977429602734446
IKQPDLGNL	9	Unmodified	_IKQPDLGNL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.287474	996.560395	-0.24896	-0.0001243	0.18108	9.0409E-05	-0.067882	-3.3893E-05	499.28742918831904	47.524	0.84691	47.428	47.046	47.893	-0.096649	-0.14956	0.00023144	NaN	49.442	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632660	+		25966	31835	17951	17988							0.061977429602734446
IKQPDLGNL	9	Unmodified	_IKQPDLGNL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.287474	996.560395	-0.29348	-0.00014653	0.25075	0.0001252	-0.042729	-2.1334E-05	499.28751352779403	47.804	0.66047	47.528	47.268	47.928	-0.27598	-0.049533	0.00030102	NaN	49.442	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591460	+		25967	31835	17951	17988							0.061977429602734446
IKQPDLGNL	9	Unmodified	_IKQPDLGNL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.287474	996.560395	-0.18491	-9.2321E-05	-0.39078	-0.00019511	-0.57569	-0.00028743	499.2872146989001	47.633	0.62685	47.446	47.123	47.749	-0.18684	-0.13117	-0.0003396	NaN	49.442	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530550	+		25968	31835	17951	17988							0.061977429602734446
IKQPSLSLNY	10	Unmodified	_IKQPSLSLNY_					0	0	0			REV__nc|nan|Q8N0U7-3|C1orf87	REV__nc|nan|Q8N0U7-3|C1orf87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	582.2930297851562	2	581.826963	1161.63937	-1.9425	-0.0011302	-0.98203	-0.00057137	-2.9245	-0.0017016	581.8266160819642	65.555	0.45401	65.341	65.175	65.629	-0.21327					22	10	3	0	0	0	0.03519	1	7477	7477		90.601	10.888	1	472080	+		25969	25459	17952	17989	29858	29858					0.06501970194563
IKQQLYLE	8	Unmodified	_IKQQLYLE_					0	0	0			REV__ENSG00000168152|ENST00000302236|THAP9	REV__ENSG00000168152|ENST00000302236|THAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.7967529296875	2	517.797675	1033.5808	-0.61168	-0.00031672	1.2529	0.00064877	0.64126	0.00033204	517.7983064430339	58.411	0.90948	58.224	57.919	58.829	-0.18705					57	24	4	0	0	0	0.2822	1	6589	6589		119.56	2.6532	1	5574000	+		25970	26235	17953	17990	29859	29859					0.06534913620089355
IKQQLYLE	8	Unmodified	_IKQQLYLE_					0	0	0			REV__ENSG00000168152|ENST00000302236|THAP9	REV__ENSG00000168152|ENST00000302236|THAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7973022460938	2	517.797675	1033.5808	-0.63258	-0.00032755	1.0962	0.00056762	0.46364	0.00024007	517.7983785408373	58.033	0.98385	58.124	57.835	58.819	0.091217					68	26	4	0	0	0	0.30538	1	6474	6474		110.34	5.5907	1	5101600	+		25971	26235	17953	17990	29860	29860					0.06534913620089355
IKQQQKMHLEK	11	Unmodified	_IKQQQKMHLEK_					0	0	0		ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENST00000510751.5_1_5:169015420-169022772:+|nuORF;nc|ENSG00000040275|Q96EA4-2|SPDL1	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.3292236328125	3	470.934378	1409.7813	2.2994	0.0010829	0.4169	0.00019633	2.7163	0.0012792	470.93444650800217	18.796	0.44687	18.553	18.324	18.771	-0.24256					13	8	2	0	0	0	0.024846	1	310	310		16.53	6.7848	1	39576			25972	15756	17954	17991	29861	29861					0.09280439945268881
IKQRLLSMHL	10	Unmodified	_IKQRLLSMHL_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2275085449219	3	413.584909	1237.7329	-0.2359	-9.7567E-05	-2.3884	-0.00098782	-2.6243	-0.0010854	413.58394649453567	36.557	1.1048	36.34	36.05	37.155	-0.21661					42	27	2	0	0	0	0.03519	1	2944	2944		35.152	2.1126	1	93952	+		25973	22521	17955	17992	29862	29862					0.12353991096006212
IKQRRGPS	8	Unmodified	_IKQRRGPS_					0	0	0			REV__ENST00000375747.5_1_9:93564254-93606283:+|nuORF	REV__ENST00000375747.5_1_9:93564254-93606283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.77728271484375	2	471.2856	940.556647	-0.81913	-0.00038604	-3.0829	-0.0014529	-3.902	-0.001839	471.2844257488196	29.383	0.83052	29.383	28.862	29.692	0					31	20	3	0	0	0	0.027866	1	1755	1755		38.806	0	1	856360	+		25974	31336	17956	17993	29863	29863					0.08399117977091919
IKQTHSQEL	9	Unmodified	_IKQTHSQEL_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.3222045898438	2	542.293288	1082.57202	-0.84282	-0.00045706	4.1651	0.0022587	3.3223	0.0018017	542.2953926908302	60.314	0.99373	60.314	59.813	60.807	0					32	23	2	0	0	0	0.024405	1	6913	6913		35.618	16.515	1	473820			25975	5213	17957	17994	29864	29864					0.03403939983604687
IKQTQEEI	8	Unmodified	_IKQTQEEI_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7904968261719	2	494.769114	987.523675	0.15323	7.5816E-05	-4.0776	-0.0020175	-3.9244	-0.0019417	494.7677915215942	24.325	1.1186	24.404	23.521	24.639	0.078346					28	24	2	0	0	0	0.027866	1	990	990		37.159	0	1	53341			25976	1949	17958	17995	29865	29865					0.029414463436978622
IKQVDRAAL	9	Unmodified	_IKQVDRAAL_					0	0	0			REV__nc|ENSG00000149262|Q96HW7-2|INTS4	REV__nc|ENSG00000149262|Q96HW7-2|INTS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.30780029296875	2	507.308741	1012.60293	-0.26039	-0.0001321	-1.191	-0.00060419	-1.4514	-0.00073629	507.3082857973226	43.417	1.8823	43.305	42.854	44.736	-0.11253					163	50	6	0	0	0	0.50848	1	3976	3976		58.782	0	1	110540000	+		25977	24666	17959	17996	29866	29866					0.09713138088500273
IKQYFNGPN	9	Unmodified	_IKQYFNGPN_					0	0	0		nc|ENSG00000148187|Q96E11-7|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7929077148438	2	540.777274	1079.53999	-0.60731	-0.00032842	-1.4953	-0.00080865	-2.1027	-0.0011371	540.775916824034	78.241	0.3399	77.986	77.701	78.041	-0.25471					10	7	2	0	0	0	0.024506	1	9325	9325		16.473	9.2798	1	42720			25978	18368	17960	17997	29867	29867					0.003405723004561878
IKRALIDGF	9	Unmodified	_IKRALIDGF_					0	0	0		CLVS1|p.P116S|1|0.22|ENSG00000177182|chr8:61300173-61300173|C/T|missense_variant;CLVS1|p.G128R|1|0.28|ENSG00000177182|chr8:61300209-61300209|G/A|missense_variant;CLVS1|p.G128A|1|0.38|ENSG00000177182|chr8:61300210-61300210|G/C|missense_variant;ENST00000521189.1_1_8:62212560-62289213:+|nuORF;nc|ENSG00000177182|Q8IUQ0-2|CLVS1;ENSG00000177182|ENST00000325897|CLVS1	CLVS1|p.P116S|1|0.22|ENSG00000177182|chr8:61300173-61300173|C/T|missense_variant	CLVS1|p.P116S|1|0.22|ENSG00000177182|chr8:61300173-61300173|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.297119140625	2	516.813659	1031.61277	-0.21389	-0.00011054	2.4619	0.0012723	2.248	0.0011618	516.814682138921	36.836	0.40172	36.62	36.368	36.769	-0.21661					13	9	2	0	0	0	0.024447	1	2905	2905		19.104	0	1	56295			25979	459	17961	17998	29868	29868					0.09822326093899392
IKREPQEALE	10	Unmodified	_IKREPQEALE_					0	0	0			REV__ENSG00000103510|ENST00000219797|KAT8;REV__ENST00000539683.2_1_16:31129164-31131922:+|nuORF	REV__ENST00000539683.2_1_16:31129164-31131922:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.8333129882812	2	606.832777	1211.651	-0.39001	-0.00023667	0.11443	6.944E-05	-0.27558	-0.00016723	606.8328708038374	54.676	1.0704	54.526	54.229	55.299	-0.15036					101	30	5	0	0	0	0.66532	1	6011	6011		69.628	1.0018	1	24037000	+		25980	21390;34737	17962	17999	29869	29869					0.05364167217908289
IKRGLSVT	8	Unmodified	_IKRGLSVT_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2799987792969	2	437.279452	872.544351	-0.028377	-1.2409E-05	0.13396	5.8579E-05	0.10558	4.617E-05	437.27940681848236	21.599	0.8219	21.409	21.078	21.9	-0.19072					46	16	4	0	0	0	0.845	1	672	672		55.504	2.1528	1	950110			25981	3767	17963	18000	29870	29870					0.10298081514042678
IKRHIEFNS	9	Unmodified	_IKRHIEFNS_					0	0	0			REV__ENSG00000160336|ENST00000684525|ZNF761	REV__ENSG00000160336|ENST00000684525|ZNF761	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.7284545898438	2	572.317097	1142.61964	-0.28964	-0.00016576	-0.16399	-9.3856E-05	-0.45363	-0.00025962	572.3169031670675	51.047	1.0463	50.898	50.561	51.608	-0.14915					82	29	4	0	0	0	0.023837	1	5439	5439		54.776	6.8168	1	2080200	+		25982	25314	17964	18001	29871	29871					0.054036389744851476
IKRHIEFNS	9	Unmodified	_IKRHIEFNS_					0	0	0			REV__ENSG00000160336|ENST00000684525|ZNF761	REV__ENSG00000160336|ENST00000684525|ZNF761	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	572.317097	1142.61964	0.61211	0.00035032	2.4793	0.0014189	3.0914	0.0017693	572.31788014547	50.959	0.18473	50.779	50.723	50.908	-0.18071	-0.049555	0.0024711	NaN	54.776	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81001	+		25983	25314	17964	18001							0.054036389744851476
IKRHNTLT	8	Unmodified	_IKRHNTLT_					0	0	0			REV__nc|ENSG00000213096|O75437-2|ZNF254	REV__nc|ENSG00000213096|O75437-2|ZNF254	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2739562988281	2	491.793258	981.571963	-1.1634	-0.00057217	0.1587	7.8046E-05	-1.0047	-0.00049412	491.79329303023917	37.819	0.61728	37.736	37.433	38.05	-0.082516					24	17	2	0	0	0	0.027866	1	3136	3136		19.36	0	1	228740	+		25984	28727	17965	18002	29872	29872					0.08043984774269575
IKRIPIHR	8	Unmodified	_IKRIPIHR_					0	0	0		ENSG00000132854|ENST00000371153|KANK4	ENSG00000132854|ENST00000371153|KANK4	ENSG00000132854|ENST00000371153|KANK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8082275390625	2	516.843085	1031.67162	-0.95624	-0.00049423	-0.69833	-0.00036093	-1.6546	-0.00085516	517.3427266841416	93.68	0.29474	93.686	93.476	93.771	0.0059891					10	6	2	0	0	0	0.027866	1	11818	11818		31.955	6.5047	1	67076			25985	4659	17966	18003	29873	29873					0.1570484717888121
IKRKGGGH	8	Unmodified	_IKRKGGGH_					0	0	0		ENST00000419912.1_1_2:242813297-242815423:+|nuORF;ENSG00000188011|ENST00000343216|RTP5	ENST00000419912.1_1_2:242813297-242815423:+|nuORF	ENST00000419912.1_1_2:242813297-242815423:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.5794372558594	2	426.761761	851.508969	1.5272	0.00065174	-1.4121	-0.00060263	0.11506	4.9104E-05	426.76102325862405	36.242	0.38227	36.044	35.91	36.292	-0.19829					12	9	2	0	0	0	0.027866	1	2794	2794		18.324	5.3652	1	108920			25986	9683	17967	18004	29874	29874					0.07727463776905097
IKRKKSNP	8	Unmodified	_IKRKKSNP_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7950134277344	2	485.811451	969.608348	0.6592	0.00032025	-0.76114	-0.00036977	-0.10194	-4.9524E-05	485.8110395720211	18.753	0.39606	18.596	18.346	18.742	-0.15637					17	7	3	0	0	0	0.027866	1	341	341		31.955	0	1	39895	+		25987	23532	17968	18005	29875	29875					0.12232861670986495
IKRKKSNP	8	Unmodified	_IKRKKSNP_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.811451	969.608348	2.8493	0.0013842	-2.668	-0.0012962	0.18128	8.8069E-05	485.81009030862884	18.829	0.39825	18.587	18.274	18.673	-0.24256	0.0052986	-0.00074984	NaN	31.955	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34894	+		25988	23532	17968	18005							0.12232861670986495
IKRLLCAR	8	Unmodified	_IKRLLCAR_					0	0	0		nc|ENSG00000198590|Q8IVJ8-2|APRG1;nc|ENSG00000198590|Q8IVJ8-3|APRG1;nc|ENSG00000198590|Q8IVJ8|APRG1	nc|ENSG00000198590|Q8IVJ8-2|APRG1	nc|ENSG00000198590|Q8IVJ8-2|APRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2919006347656	2	486.810396	971.60624	-0.45494	-0.00022147	3.2867	0.0016	2.8318	0.0013786	486.81197879165165	81.94	0.20147	81.94	81.83	82.031	0					8	4	2	0	0	0	0.027866	1	10232	10232		3.9852	0	1	113590			25989	18649	17969	18006	29876	29876					0.11930109661523147
IKRQKKRKIS	10	Unmodified	_IKRQKKRKIS_					0	0	0		WDR72|p.M772R|1|0.42|ENSG00000166415|chr15:53615891-53615891|A/C|missense_variant	WDR72|p.M772R|1|0.42|ENSG00000166415|chr15:53615891-53615891|A/C|missense_variant	WDR72|p.M772R|1|0.42|ENSG00000166415|chr15:53615891-53615891|A/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2618408203125	3	428.957734	1283.85137	-0.76161	-0.0003267	2.9719	0.0012748	2.2103	0.00094811	429.2935200442405	90.007	0.44	90.007	89.774	90.214	0					11	10	2	0	0	0	0.03519	1	11348	11348		3.6191	0	1	49389			25990	38152	17970	18007	29877	29877					0.2208010639603799
IKRSKALSD	9	Unmodified	_IKRSKALSD_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3058166503906	2	509.306198	1016.59784	-0.44141	-0.00022481	0.23311	0.00011872	-0.2083	-0.00010609	509.30622347701615	91.862	1.4922	91.853	91.451	92.944	-0.0082932					106	35	5	0	0	0	0.89441	1	11589	11589		32.812	1.2826	1	3607500			25991	4041;18240	17971	18008	29878	29878					0.09020834225896124
IKRTMEEKP	9	Unmodified	_IKRTMEEKP_					0	0	0			REV__ENST00000369763.4_1_1:111492648-111493935:-|nuORF	REV__ENST00000369763.4_1_1:111492648-111493935:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.2916259765625	2	566.313166	1130.61178	-0.10427	-5.9047E-05	1.3214	0.00074834	1.2172	0.00068929	566.3128839790173	59.897	1.2471	59.897	59.52	60.768	0					56	33	2	0	0	0	0.024397	1	6874	6874		39.253	0	1	391490	+		25992	31099	17972	18009	29879	29879					0.05169743662668225
IKRTMEEKP	9	Unmodified	_IKRTMEEKP_					0	0	0			REV__ENST00000369763.4_1_1:111492648-111493935:-|nuORF	REV__ENST00000369763.4_1_1:111492648-111493935:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2903442382812	2	566.313166	1130.61178	-0.83189	-0.00047111	1.0462	0.00059249	0.21434	0.00012138	566.3138058935917	59.553	0.479	59.638	59.464	59.943	0.085682					19	12	2	0	0	0	0.024427	1	6737	6737		19.997	0	1	347930	+		25993	31099	17972	18009	29880	29880					0.05169743662668225
IKRVATTT	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IKRVATTT_					1	0	0			REV__ENSG00000179520|ENST00000323346|SLC17A8	REV__ENSG00000179520|ENST00000323346|SLC17A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.2841796875	2	466.282192	930.549831	0.072218	3.3674E-05	4.3686	0.002037	4.4408	0.0020707	466.2841167361943	102.25	0.64996	102.26	101.98	102.63	0.0073471					32	14	3	0	0	0	0.87148	2	13079	13054;13079		53.351	14.545	1	422510	+		25994	27273	17973	18010	29881;29882	29882					0.08177760305818538
IKRWLDPL	8	Unmodified	_IKRWLDPL_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3	REV__ENSG00000053747|ENST00000313654|LAMA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2411499023438	2	520.816202	1039.61785	-0.56902	-0.00029635	-0.89133	-0.00046422	-1.4603	-0.00076057	520.8167702459156	75.98	0.146	75.735	75.653	75.799	-0.24455					5	3	2	0	0	0	0.027866	1	9309	9309		18.324	0.95945	1	81714	+		25995	20182	17974	18011	29883	29883					0.09962629956521596
IKRYRKDLF	9	Unmodified	_IKRYRKDLF_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8693237304688	2	619.87204	1237.72953	-0.53181	-0.00032965	-3.5656	-0.0022102	-4.0974	-0.0025399	619.869574942614	104.77	0.53139	104.76	104.51	105.05	-0.0015945					37	16	3	0	0	0	0.92825	1	13394	13394		30.504	3.8107	1	203150	+		25996	23785	17975	18012	29884	29884					0.12017064313636183
IKSCLRLSDT	10	Unmodified	_IKSCLRLSDT_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.81103515625	2	568.310623	1134.60669	-0.17406	-9.8919E-05	4.4463	0.0025269	4.2723	0.002428	568.3131892667082	69.429	0.91156	69.207	68.894	69.806	-0.22245					48	21	4	0	0	0	0.03519	1	8040	8040		26.693	0	1	1134200	+		25997	20707	17976	18013	29885	29885					0.04477439800052707
IKSEDMLKI	9	Unmodified	_IKSEDMLKI_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8025512695312	2	538.804642	1075.59473	0.0041487	2.2353E-06	-4.4752	-0.0024113	-4.471	-0.002409	538.8016496239434	87.804	0.63877	87.668	87.388	88.027	-0.13614					34	15	4	0	0	0	0.247	1	10723	10723		82.75	0.50997	1	1162300			25998	7403	17977	18014	29886	29886					0.05995823056855443
IKSEHPGLIL	10	Unmodified	_IKSEHPGLIL_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.2761840820312	2	553.832049	1105.64954	0.71194	0.00039429	-4.4227	-0.0024494	-3.7107	-0.0020551	554.330373531952	97.858	0.21406	97.856	97.68	97.894	-0.0020752					6	4	2	0	0	0	0.03519	1	12415	12415		16.473	3.0191	1	23012	+		25999	21436	17978	18015	29887	29887					0.10094577919812764
IKSFVKVYNYN	11	Unmodified	_IKSFVKVYNYN_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.26629638671875	3	458.918722	1373.73434	-0.73447	-0.00033706	-2.5699	-0.0011794	-3.3044	-0.0015164	458.91770089268306	28.293	0.5339	28.124	27.847	28.38	-0.16897					26	12	3	0	0	0	0.02477	1	1672	1672		28.577	11.41	1	153100			26000	4528	17979	18016	29888	29888					0.06241903665772952
IKSGNRPDV	9	Unmodified	_IKSGNRPDV_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.28704833984375	2	493.274898	984.535243	-0.02881	-1.4211E-05	-4.202	-0.0020727	-4.2308	-0.002087	493.2735487718718	22.357	0.41742	22.168	21.863	22.281	-0.18894					12	8	2	0	0	0	0.024418	1	784	784		37.812	0	1	201730			26001	5111	17980	18017	29889	29889					0.042356881577120475
IKSGRSPLI	9	Unmodified	_IKSGRSPLI_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.80535888671875	2	485.805834	969.597115	-0.14106	-6.8526E-05	-0.30769	-0.00014948	-0.44874	-0.000218	485.80556673210566	34.284	1.1141	34.279	33.988	35.102	-0.0045624					66	28	4	0	0	0	0.53979	1	2548	2548		56.721	1.2168	1	4371900			26002	13698	17981	18018	29890	29890					0.11110039576851705
IKSITKALS	9	Unmodified	_IKSITKALS_					0	0	0			REV__nc|ENSG00000151575|Q8N6V9-2|TEX9	REV__nc|ENSG00000151575|Q8N6V9-2|TEX9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2873229980469	2	480.808042	959.601532	0.19917	9.5762E-05	4.2849	0.0020602	4.4841	0.002156	480.80993068617727	66.491	0.62184	66.243	65.782	66.404	-0.24839					34	15	3	0	0	0	0.024447	1	7574	7574		32.812	0	1	423020	+		26003	24779	17982	18019	29891	29891					0.1201150399974722
IKSIVKSSLG	10	Unmodified	_IKSIVKSSLG_					0	0	0		ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS	ENSG00000164654|ENST00000340080|MIOS	ENSG00000164654|ENST00000340080|MIOS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.25732421875	2	516.326599	1030.63865	0.40081	0.00020695	-0.76553	-0.00039526	-0.36472	-0.00018832	516.3259608296635	25.35	0.37406	25.179	24.95	25.324	-0.17151					12	8	2	0	0	0	0.03519	1	1158	1158		25.574	5.5773	1	59012			26004	7303	17983	18020	29892	29892					0.12455175545505881
IKSKKMKE	8	Unmodified	_IKSKKMKE_					0	0	0		ENSG00000058673|ENST00000367210|ZC3H11A;nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B	ENSG00000058673|ENST00000367210|ZC3H11A	ENSG00000058673|ENST00000367210|ZC3H11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.3005065917969	2	496.30207	990.589587	-0.95557	-0.00047425	-3.1698	-0.0015732	-4.1253	-0.0020474	496.30046793217934	33.263	1.8625	33.097	32.76	34.622	-0.16565					103	46	5	0	0	0	0.44658	1	2322	2322		90.777	8.5361	1	11329000			26005	1216	17984	18021	29893	29893					0.09391563984922868
IKSKVAPLSL	10	Unmodified	_IKSKVAPLSL_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-5|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.296875	2	528.344792	1054.67503	-0.31606	-0.00016699	-0.37311	-0.00019713	-0.68917	-0.00036412	528.344061827243	55.829	0.75105	55.829	55.353	56.104	0					32	20	3	0	0	0	0.03519	1	6233	6233		20.947	0	1	217860			26006	3961	17985	18022	29894	29894					0.14988052442231492
IKSLITAIT	9	Unmodified	_IKSLITAIT_					0	0	0			REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29327392578125	2	480.310418	958.606283	-0.52392	-0.00025164	-3.2712	-0.0015712	-3.7951	-0.0018228	480.3091259176664	65.139	0.24953	65.139	64.909	65.158	0					10	6	2	0	0	0	0.024418	1	7703	7703		45.972	20.522	1	179990	+		26007	33634	17986	18023	29895	29895					0.1253238814249471
IKSLITAIT	9	Unmodified	_IKSLITAIT_					0	0	0			REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2921142578125	2	480.310418	958.606283	-0.88959	-0.00042728	0.24202	0.00011624	-0.64757	-0.00031103	480.3101820925237	55.678	0.18563	55.776	55.671	55.856	0.098011					8	4	2	0	0	0	0.024539	1	6080	6080		27.882	3.6795	1	87932	+		26008	33634	17986	18023	29896	29896					0.1253238814249471
IKSQPLIDPI	10	Unmodified	_IKSQPLIDPI_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.323486328125	2	562.339707	1122.66486	-0.69041	-0.00038824	-1.1813	-0.00066427	-1.8717	-0.0010525	562.3383952178544	69.575	0.24572	69.307	69.164	69.41	-0.26725					8	5	2	0	0	0	0.03519	1	8072	8072		39.253	6.4404	1	89021	+		26009	22248	17987	18024	29897	29897					0.10843444716988415
IKSRKSRF	8	Unmodified	_IKSRKSRF_					0	0	0			REV__USP3|p.N355I|1|0.35|ENSG00000140455|chr15:63574371-63574371|A/T|missense_variant	REV__USP3|p.N355I|1|0.35|ENSG00000140455|chr15:63574371-63574371|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.31524658203125	2	511.3169	1020.61925	-0.59843	-0.00030599	0.18889	9.6584E-05	-0.40953	-0.0002094	511.3168862333682	22.409	1.1706	22.409	21.723	22.894	0					56	24	4	0	0	0	1.0574	1	782	782		27.882	1.0861	1	529700	+		26010	37767	17988	18025	29898	29898					0.10976264045280004
IKSSEPVSV	9	Unmodified	_IKSSEPVSV_					0	0	0		ENST00000455372.2_1_19:2735820-2735976:-|nuORF	ENST00000455372.2_1_19:2735820-2735976:-|nuORF	ENST00000455372.2_1_19:2735820-2735976:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.786865234375	2	473.266207	944.517862	0.84812	0.00040139	-0.68987	-0.00032649	0.15825	7.4896E-05	473.26575368118	83.873	0.72229	83.662	83.393	84.116	-0.21159					26	16	2	0	0	0	0.024427	1	10095	10095		34.173	13.691	1	371710			26011	14578	17989	18026	29899	29899					0.04338347832049294
IKSTVDFCPP	10	Unmodified	_IKSTVDFCPP_					0	0	0		ENST00000369478.3_1_1:117311417-117311705:+|nuORF	ENST00000369478.3_1_1:117311417-117311705:+|nuORF	ENST00000369478.3_1_1:117311417-117311705:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7822265625	2	553.781167	1105.54778	0.47986	0.00026574	2.2442	0.0012428	2.724	0.0015085	553.7823921487068	82.764	2.2274	82.544	82.173	84.401	-0.22015					87	51	2	0	0	0	0.66532	1	10012	10012		69.628	1.1429	1	4488900			26012	12921	17990	18027	29900	29900					-0.000770364942809465
IKSVLHPN	8	Unmodified	_IKSVLHPN_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.2496032714844	2	454.271627	906.528701	0.15097	6.8582E-05	-0.6943	-0.0003154	-0.54333	-0.00024682	454.2712788773525	56.682	0.41158	56.682	56.46	56.872	0					16	11	2	0	0	0	0.027866	1	6358	6358		21.96	0	1	195230	+		26013	20915	17991	18028	29901	29901					0.07169794996991641
IKSYLVACLP	10	Unmodified	_IKSYLVACLP_					0	0	0			REV__ENSG00000215529|ENST00000400522|EFCAB8	REV__ENSG00000215529|ENST00000400522|EFCAB8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.78515625	2	553.817553	1105.62055	-0.16935	-9.3788E-05	-0.82309	-0.00045584	-0.99244	-0.00054963	553.8160786649128	42.844	0.8703	42.844	42.497	43.367	0					42	23	3	0	0	0	0.03519	1	4042	4042		64.207	8.7031	1	758420	+		26014	28808	17992	18029	29902	29902					0.07196717299143529
IKTDKWTT	8	Unmodified	_IKTDKWTT_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|43|3|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|43|3|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|43|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3131408691406	2	496.7742	991.533846	-0.40668	-0.00020203	0.54968	0.00027307	0.143	7.1038E-05	496.77419402104897	73.34	0.80431	73.076	72.681	73.485	-0.26479					40	19	3	0	0	0	0.027866	1	8677	8677		24.203	7.7296	1	991940			26015	17860	17993	18030	29903	29903					0.037740540689469526
IKTIKVYC	8	Unmodified	_IKTIKVYC_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2879638671875	2	484.285889	966.557224	0.25969	0.00012576	3.6216	0.0017539	3.8813	0.0018797	484.2876236834805	42.375	0.99752	42.375	41.825	42.823	0					43	28	3	0	0	0	0.46709	1	3903	3903		88.643	17.347	1	4088400			26016	2088	17994	18031	29904	29904					0.07260776581904338
IKTIKVYC	8	Unmodified	_IKTIKVYC_					0	0	0		ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENSG00000099817|ENST00000615234|POLR2E	ENSG00000099817|ENST00000615234|POLR2E	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2879638671875	2	484.285889	966.557224	-0.34127	-0.00016527	4.3276	0.0020958	3.9864	0.0019305	484.2879946642471	42.461	1.0764	42.487	41.821	42.897	0.026012					41	30	2	0	0	0	0.59392	1	3853	3853		76.847	11.043	1	3996200			26017	2088	17994	18031	29905	29905					0.07260776581904338
IKTKNQLDL	9	Unmodified	_IKTKNQLDL_					0	0	0			REV__ENST00000582655.5_1_17:27237161-27237842:-|nuORF	REV__ENST00000582655.5_1_17:27237161-27237842:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.823486328125	2	536.821681	1071.62881	-1.6761	-0.00089976	1.0759	0.00057755	-0.60023	-0.00032222	536.8221382583547	21.664	0.62833	21.451	21.216	21.845	-0.2128					25	12	4	0	0	0	0.89441	1	679	679		32.812	0	1	262880	+		26018	35542	17995	18032	29906	29906					0.09585987540140195
IKTKTLLNK	9	Unmodified	_IKTKTLLNK_					0	0	0			REV__nc|ENSG00000104763|Q13510-3|ASAH1	REV__nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8082275390625	2	529.850242	1057.68593	-0.61944	-0.00032821	-0.37138	-0.00019678	-0.99082	-0.00052499	529.8497714074992	73.674	0.29476	73.402	73.204	73.499	-0.27126					11	7	2	0	0	0	0.024541	1	8941	8941		6.7355	0	1	213360	+		26019	21460	17996	18033	29907	29907					0.15939454816520993
IKTLKELKV	9	Unmodified	_IKTLKELKV_					0	0	0		ENSG00000132326|ENST00000254657|PER2;nc|ENSG00000132326|O15055-2|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3306884765625	2	536.360442	1070.70633	-1.1094	-0.00059505	-2.9768	-0.0015967	-4.0863	-0.0021917	536.3590772273074	46.691	0.16755	46.497	46.345	46.512	-0.19387					5	4	2	0	0	0	0.024539	1	4491	4491		14.865	0	1	191230			26020	4592	17997	18034	29908	29908					0.17380625476312161
IKTLQKLPHIL	11	Unmodified	_IKTLQKLPHIL_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7482604980469	3	435.286857	1302.83874	-0.11789	-5.1316E-05	1.4736	0.00064145	1.3557	0.00059013	435.2866610302361	65.709	0.48563	65.436	65.195	65.681	-0.27283					21	13	2	0	0	0	0.024735	1	7757	7757		21.78	0	1	116310			26021	4700	17998	18035	29909	29909					0.19943650213122055
IKTLTKNIN	9	Unmodified	_IKTLTKNIN_					0	0	0			REV__ENSG00000162618|ENST00000370742|ADGRL4	REV__ENSG00000162618|ENST00000370742|ADGRL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8341674804688	2	522.824224	1043.63389	0.37341	0.00019523	4.1173	0.0021526	4.4907	0.0023479	522.8258592893836	69.695	0.90959	69.402	69.01	69.92	-0.29291					46	22	4	0	0	0	0.024367	1	8337	8337		36.447	3.6343	1	698440	+		26022	25464	17999	18036	29910	29910					0.11382291402765077
IKTMPELEAIT	11	Unmodified	_IKTMPELEAIT_					0	0	0			REV__ENSG00000101842|ENST00000217957|VSIG1	REV__ENSG00000101842|ENST00000217957|VSIG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.22088623046875	3	415.896818	1244.66863	-0.16275	-6.7687E-05	1.8083	0.00075208	1.6456	0.0006844	416.2317451840528	24.328	1.0327	24.113	23.644	24.677	-0.2151					41	23	3	0	0	0	0.024774	1	1111	1111		37.6	19.069	1	318910	+		26023	21257	18000	18037	29911	29911					0.056077464285408496
IKTNKASVPN	10	Unmodified	_IKTNKASVPN_					0	0	0			REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3306884765625	2	536.31148	1070.60841	-1.0969	-0.00058827	2.819	0.0015119	1.7221	0.0009236	536.3122427096415	46.697	0.29885	46.503	46.345	46.644	-0.19387					12	8	3	0	0	0	0.03519	1	4491	4491		29.17	0	1	352700	+		26024	37007	18001	18038	29912	29912					0.07592816880332975
IKVEPVAL	8	Unmodified	_IKVEPVAL_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7798767089844	2	434.778754	867.542954	-0.43363	-0.00018853	3.7697	0.001639	3.3361	0.0014505	434.7802551861221	40.423	1.9513	40.273	39.513	41.464	-0.1497					168	51	4	0	0	0	0.97924	1	3565	3565		40.573	10.731	1	6063000			26025	7442	18002	18039	29913	29913					0.10388447425270897
IKVIVGSVFQP	11	Unmodified	_IKVIVGSVFQP_					0	0	0			REV__nc|ENSG00000174720|Q4G0J3-2|LARP7	REV__nc|ENSG00000174720|Q4G0J3-2|LARP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8019409179688	2	593.863349	1185.71214	-0.75854	-0.00045047	-0.67099	-0.00039848	-1.4295	-0.00084895	593.8636076096183	36.012	0.26532	35.795	35.614	35.879	-0.21661					10	7	2	0	0	0	0.024774	1	2781	2781		46.457	10.01	1	181910	+		26026	26888	18003	18040	29914	29914					0.12671723987978112
IKVKVEPK	8	Unmodified	_IKVKVEPK_					0	0	0			REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.8084716796875	2	470.813128	939.611703	0.33345	0.00015699	-1.2489	-0.00058802	-0.9155	-0.00043103	470.81223477880224	40.175	0.79938	40.062	39.83	40.629	-0.11223					43	21	3	0	0	0	0.027866	1	3584	3584		31.955	0	1	563330	+		26027	19700	18004	18041	29915	29915					0.13948111724982937
IKVKWEMKPE	10	Unmodified	_IKVKWEMKPE_					0	0	0			REV__ENST00000548316.1_1_12:41903559-41967689:+|nuORF	REV__ENST00000548316.1_1_12:41903559-41967689:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.2764892578125	3	429.90917	1286.70568	0.089965	3.8677E-05	-0.31986	-0.00013751	-0.2299	-9.8836E-05	430.24275450159035	49.95	0.21832	49.799	49.671	49.889	-0.1512					7	5	2	0	0	0	0.03519	1	5153	5153		3.8434	0	1	137470	+		26028	25950	18005	18042	29916	29916					0.07379462764947675
IKVNQRTDKNE	11	Unmodified	_IKVNQRTDKNE_					0	0	0		nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL	nc|ENSG00000136155|O95171-3|SCEL	nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2353515625	3	448.912519	1343.71573	-0.58924	-0.00026452	1.3435	0.00060312	0.75427	0.0003386	449.24854556380916	26.76	0.62341	26.841	26.372	26.996	0.081293					22	14	2	0	0	0	0.024726	1	1313	1313		32.034	14.867	1	82622			26029	4989	18006	18043	29917	29917					0.05761742023901206
IKVQLLDDN	9	Unmodified	_IKVQLLDDN_					0	0	0		ENSG00000280165|ENST00000409204|PCDH20;PCDH20|p.V663Gfs*7|1|0.07|ENSG00000280165|chr13:61412111-61412112|-/GTACTGC|frameshift_variant	ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2980346679688	2	529.298039	1056.58152	0.36847	0.00019503	0.62038	0.00032837	0.98885	0.0005234	529.298825559372	107.22	0.74744	107.22	106.72	107.47	0					29	21	2	0	0	0	0.89441	1	13769	13769		32.812	0.85756	1	101350			26030	11078	18007	18044	29918	29918					0.055497082691545074
IKVSGYLNL	9	Unmodified	_IKVSGYLNL_					0	0	0		nc|ENSG00000165915|Q96H72-2|SLC39A13;ENSG00000165915|ENST00000362021|SLC39A13	nc|ENSG00000165915|Q96H72-2|SLC39A13	nc|ENSG00000165915|Q96H72-2|SLC39A13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2480773925781	2	503.800217	1005.58588	-0.36187	-0.00018231	-1.2855	-0.00064766	-1.6474	-0.00082997	503.7990475901216	61.273	0.44624	61.053	60.75	61.196	-0.21965					23	11	3	0	0	0	0.024418	1	7069	7069		37.812	14.289	1	231820			26031	7484	18008	18045	29919	29919					0.08331217482702868
IKVSYFLPYAI	11	Unmodified	_IKVSYFLPYAI_					0	0	0		ENST00000444332.1_1_3:5164021-5212295:+|nuORF	ENST00000444332.1_1_3:5164021-5212295:+|nuORF	ENST00000444332.1_1_3:5164021-5212295:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.7290344238281	3	438.588313	1312.74311	-0.4629	-0.00020302	2.3123	0.0010141	1.8494	0.00081111	438.58957300007916	35.269	0.3614	35.269	35.093	35.455	0					15	9	2	0	0	0	0.024813	1	2709	2709		6.3209	0	1	99522			26032	14417	18009	18046	29920	29920					0.09924877302250934
IKVTGKVADL	10	Unmodified	_IKVTGKVADL_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7476806640625	2	522.326599	1042.63865	0.0060663	3.1686E-06	-0.39729	-0.00020752	-0.39123	-0.00020435	522.3264078428818	37.074	0.54748	36.881	36.455	37.002	-0.193					24	13	2	0	0	0	0.03519	1	2936	2936		24.519	3.5723	1	86434	+		26033	20825	18010	18047	29921	29921					0.11903175545512568
IKVVAAVI	8	Unmodified	_IKVVAAVI_					0	0	0			REV__ENSG00000172324|ENST00000302040|OR5A2	REV__ENSG00000172324|ENST00000302040|OR5A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8878479003906	2	406.783839	811.553125	0.29456	0.00011982	3.7835	0.0015391	4.0781	0.0016589	406.7853963372818	33.765	0.67086	33.541	33.362	34.033	-0.22412					23	16	2	0	0	0	0.027866	1	2443	2443		4.3163	2.9886	1	64089	+		26034	26659	18011	18048	29922	29922					0.13981055150509292
IKVVAAVI	8	Unmodified	_IKVVAAVI_					0	0	0			REV__ENSG00000172324|ENST00000302040|OR5A2	REV__ENSG00000172324|ENST00000302040|OR5A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	406.783839	811.553125	0.75335	0.00030645	2.7631	0.001124	3.5164	0.0014304	406.7848681053212	34.02	0.74507	34.02	33.626	34.371	0	0.30458	-0.00012283	NaN	3.9852	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74892	+		26035	26659	18011	18048							0.13981055150509292
IKWEIVAR	8	Unmodified	_IKWEIVAR_					0	0	0		ENST00000378180.8_1_13:50678890-50679094:+|nuORF	ENST00000378180.8_1_13:50678890-50679094:+|nuORF	ENST00000378180.8_1_13:50678890-50679094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.805419921875	2	507.808377	1013.6022	-0.88022	-0.00044698	-2.8073	-0.0014256	-3.6876	-0.0018726	507.8067116011844	34.433	0.97263	34.483	34.047	35.02	0.050255					56	24	3	0	0	0	0.68164	1	2533	2533		68.787	7.8149	1	2752500			26036	13230	18012	18049	29923	29923					0.09594343439459863
IKWKKDGIH	9	Unmodified	_IKWKKDGIH_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.7568969726562	2	562.832383	1123.65021	-0.61192	-0.00034441	-2.744	-0.0015444	-3.3559	-0.0018888	562.8308462526791	32.392	0.26401	32.455	32.238	32.502	0.062885					8	6	2	0	0	0	0.024367	1	2167	2167		52.937	3.4952	1	46276			26037	9622	18013	18050	29924	29924					0.09333417359516716
IKWRGQETTW	10	Unmodified	_IKWRGQETTW_					0	0	0		ENST00000467290.1_1_X:103375817-103401633:-|nuORF	ENST00000467290.1_1_X:103375817-103401633:-|nuORF	ENST00000467290.1_1_X:103375817-103401633:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.54742431640625	3	435.56305	1303.66732	-1.2198	-0.00053131	-0.095624	-4.165E-05	-1.3155	-0.00057296	435.56267974503703	29.006	1.0327	28.76	28.491	29.524	-0.24524					32	23	3	0	0	0	0.03519	1	1841	1841		32.751	8.5187	1	99253			26038	14834	18014	18051	29925	29925					0.02763293174643877
IKWVKIKG	8	Unmodified	_IKWVKIKG_					0	0	0			REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29052734375	2	486.323663	970.632772	-0.49312	-0.00023982	2.9189	0.0014195	2.4257	0.0011797	486.326118916137	27.541	0.25752	27.528	27.314	27.572	-0.012983					9	6	2	0	0	0	0.027866	1	1513	1513		25.45	6.0902	1	97130	+		26039	22660	18015	18052	29926	29926					0.14628121824500795
IKYGIDAPQ	9	Unmodified	_IKYGIDAPQ_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1	REV__ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.75555419921875	2	502.7742	1003.53385	0.0074347	3.738E-06	-0.78384	-0.0003941	-0.77641	-0.00039036	503.27699913634564	47.531	0.30033	47.262	47.163	47.463	-0.26939					10	7	2	0	0	0	0.024495	1	4666	4666		14.137	0	1	95778	+		26040	25139	18016	18053	29927	29927					0.032220540689422705
IKYKDKIK	8	Unmodified	_IKYKDKIK_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2410888671875	2	518.331685	1034.64882	-0.58767	-0.00030461	-2.5937	-0.0013444	-3.1814	-0.001649	518.3301636775751	26.205	0.40666	26.182	25.998	26.405	-0.023088					11	9	2	0	0	0	0.027866	1	1307	1307		23.042	4.7181	1	54347			26041	6400	18017	18054	29928	29928					0.13287783270743603
IKYKNPAQ	8	Unmodified	_IKYKNPAQ_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|31|2|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|31|2|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|31|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29229736328125	2	481.276909	960.539266	0.90616	0.00043611	-2.3299	-0.0011213	-1.4238	-0.00068522	481.2754522123954	55.684	1.1605	55.684	54.979	56.139	0					51	32	2	0	0	0	0.027866	1	6184	6184		30.504	12.179	1	870580			26042	17712	18018	18055	29929	29929					0.05741777651417124
IKYKPLWSLV	10	Unmodified	_IKYKPLWSLV_					0	0	0			REV__ENSG00000174502|ENST00000367135|SLC26A9	REV__ENSG00000174502|ENST00000367135|SLC26A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315368652344	3	416.256787	1245.74853	0.18661	7.7676E-05	-2.9577	-0.0012312	-2.7711	-0.0011535	416.2555701763159	21.464	0.52686	21.286	21.016	21.543	-0.17721					15	10	2	0	0	0	0.03519	1	646	646		28.081	8.051	1	47019	+		26043	26871	18019	18056	29930	29930					0.13548600884701045
IKYLPEKKLH	10	Unmodified	_IKYLPEKKLH_					0	0	0		PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.24578857421875	3	423.595691	1267.76524	-1.368	-0.00057947	-1.9284	-0.00081686	-3.2964	-0.0013963	423.5948585720738	30.696	0.45289	30.696	30.467	30.92	0					14	10	2	0	0	0	0.03519	1	1993	1993		28.577	10.744	1	51450			26044	19002	18020	18057	29931	29931					0.14207101770648478
IKYPKNSII	9	Unmodified	_IKYPKNSII_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-4|DIS3L	REV__nc|ENSG00000166938|Q8TF46-4|DIS3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3267822265625	2	538.329142	1074.64373	0.30756	0.00016557	-4.081	-0.0021969	-3.7735	-0.0020314	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.96322	1	12436	12436		27.882	3.6795	1	21168000	+		26045	26087	18021	18058	29932	29932					0.10939479408125408
IKYTATID	8	Unmodified	_IKYTATID_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.23193359375	2	462.755475	923.496398	-1.1285	-0.00052222	-1.6996	-0.00078652	-2.8281	-0.0013087	462.7545525683602	29.052	0.44073	29.052	28.82	29.26	0					15	10	2	0	0	0	0.027866	1	1723	1723		11.511	0	1	169820	+		26046	20528	18022	18059	29933	29933					0.03158962803343002
ILAAHVPTL	9	Unmodified	_ILAAHVPTL_					0	0	0		ENST00000592624.1_1_19:1242319-1242811:+|nuORF;ENST00000590265.5_1_19:1242319-1244433:+|nuORF;ENSG00000099624|ENST00000215375|ATP5F1D	ENST00000592624.1_1_19:1242319-1242811:+|nuORF	ENST00000592624.1_1_19:1242319-1242811:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7315979003906	2	467.789653	933.564752	0.17011	7.9575E-05	-0.0024427	-1.1427E-06	0.16766	7.8432E-05	467.7895867278944	60.203	0.62813	60.203	59.88	60.509	0					24	16	2	0	0	0	0.02309	1	6916	6916		68.485	0	1	169690			26047	2078	18023	18060	29934	29934					0.09531252173849225
ILAAVETRL	9	Unmodified	_ILAAVETRL_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28;ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.306396484375	2	493.305667	984.596781	0.031035	1.531E-05	-0.50497	-0.00024911	-0.47394	-0.0002338	493.30540554648553	56.119	0.99241	56.119	55.786	56.778	0					73	27	5	0	0	0	0.15366	1	6275	6275		98.629	13.714	1	10044000			26048	5684	18024	18061	29935	29935					0.10386619857001733
ILAAVETRL	9	Unmodified	_ILAAVETRL_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28;ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3058776855469	2	493.305667	984.596781	-0.78708	-0.00038827	0.2897	0.00014291	-0.49738	-0.00024536	493.30582554426474	55.972	0.68941	56.07	55.707	56.397	0.097893					57	18	4	0	0	0	0.10174	2	6169	6169;6181		110.12	8.2596	1	9734700			26049	5684	18024	18061	29936;29937	29936					0.10386619857001733
ILADATEQV	9	Unmodified	_ILADATEQV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF;ENST00000455725.6_1_11:43333659-43340000:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2555847167969	2	480.25584	958.497126	-0.55359	-0.00026587	0.78718	0.00037805	0.23359	0.00011218	480.2560520166149	53.222	0.50038	53.318	53.092	53.592	0.095669					33	13	3	0	0	0	0.017084	2	5690	5678;5690		217.64	93.048	1	2682400			26050	7517	18025	18062	29938;29939	29939					0.01621757452392103
ILADATEQV	9	Unmodified	_ILADATEQV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF;ENST00000455725.6_1_11:43333659-43340000:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.25584	958.497126	0.32694	0.00015701	0.012077	5.8003E-06	0.33902	0.00016281	480.2555876427602	53.381	0.49522	53.381	53.16	53.655	0	-0.017563	-0.00015692	NaN	217.64	45	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2204900			26051	7517	18025	18062							0.01621757452392103
ILADATEQV	9	Unmodified	_ILADATEQV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF;ENST00000455725.6_1_11:43333659-43340000:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.25584	958.497126	-0.62316	-0.00029928	0.74891	0.00035967	0.12575	6.0393E-05	480.2560694107335	53.511	0.47002	53.364	53.096	53.566	-0.14723	-0.035047	0.00055082	NaN	217.64	41	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2356800			26052	7517	18025	18062							0.01621757452392103
ILADIVISA	9	Unmodified	_ILADIVISA_					0	0	0		ENST00000320415.6_1_7:82219286-82219658:-|nuORF;nc|ENSG00000065911|P13995-2|MTHFD2;ENSG00000065911|ENST00000394053|MTHFD2	ENST00000320415.6_1_7:82219286-82219658:-|nuORF	ENST00000320415.6_1_7:82219286-82219658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.7829895019531	2	457.781493	913.548434	-0.045034	-2.0616E-05	0.26081	0.00011939	0.21577	9.8778E-05	457.7814585982462	79.758	1.1341	79.78	79.478	80.612	0.021439					51	26	3	0	0	0	0.18915	1	9812	9812		90.777	21.99	1	980760			26053	1323	18026	18063	29940	29940					0.08820126217096913
ILADPRSK	8	Unmodified	_ILADPRSK_					0	0	0		ENST00000311172.11_1_11:72549565-72549709:-|nuORF	ENST00000311172.11_1_11:72549565-72549709:-|nuORF	ENST00000311172.11_1_11:72549565-72549709:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.78448486328125	2	450.269084	898.523616	-0.62687	-0.00028226	1.1042	0.00049718	0.4773	0.00021491	450.2696401897516	28.354	0.66822	28.354	28.151	28.82	0					19	15	2	0	0	0	0.027866	1	1703	1703		38.806	0	1	32174			26054	12078	18027	18064	29941	29941					0.07029491134380805
ILADRRKN	8	Unmodified	_ILADRRKN_					0	0	0		ENST00000544245.1_12:9098881-9102125:-|nuORF;ENST00000540837.1_12:9098881-9102125:-|nuORF	ENST00000544245.1_12:9098881-9102125:-|nuORF	ENST00000544245.1_12:9098881-9102125:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3018493652344	2	493.298707	984.582862	-0.57415	-0.00028323	2.2305	0.0011003	1.6564	0.00081709	493.29987537194154	56.717	0.84726	56.553	56.313	57.16	-0.16431					50	23	4	0	0	0	0.33369	1	6293	6293		106.42	7.0402	1	4676100			26055	16432	18028	18065	29942	29942					0.08995387148559075
ILAEEQFIL	9	Unmodified	_ILAEEQFIL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3049926757812	2	538.305332	1074.59611	-0.043972	-2.367E-05	-0.29725	-0.00016001	-0.34122	-0.00018368	538.3050088443749	85.843	1.1627	85.648	85.301	86.464	-0.19508					75	26	4	0	0	0	0.20967	2	10412	10412;10426		87.754	7.2997	1	1686200			26056	5089	18029	18066	29943;29944	29943					0.06179780417301117
ILAEEQFIL	9	Unmodified	_ILAEEQFIL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3049926757812	2	538.305332	1074.59611	-0.42967	-0.00023129	0.052873	2.8462E-05	-0.3768	-0.00020283	538.3051972759014	85.797	1.1167	85.659	85.326	86.443	-0.13753					73	25	4	0	0	0	0.15029	1	10406	10406		99.375	0	1	1508200			26057	5089	18029	18066	29945	29945					0.06179780417301117
ILAEHLQTL	9	Unmodified	_ILAEHLQTL_					0	0	0		ENST00000505484.5_1_4:121737976-121843799:-|nuORF;ENST00000512845.5_1_4:121737455-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-4|PRDM5;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5;ENST00000507611.1_1_4:121739497-121742479:-|nuORF	ENST00000505484.5_1_4:121737976-121843799:-|nuORF	ENST00000505484.5_1_4:121737976-121843799:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.76416015625	2	519.303124	1036.5917	-0.9172	-0.0004763	0.99426	0.00051632	0.077064	4.002E-05	519.303560305526	84.362	0.63055	84.289	83.917	84.548	-0.072769					35	14	4	0	0	0	0.024447	1	10493	10493		32.812	4.9302	1	708170			26058	5274	18030	18067	29946	29946					0.07486315994378856
ILAEHLQTL	9	Unmodified	_ILAEHLQTL_					0	0	0		ENST00000505484.5_1_4:121737976-121843799:-|nuORF;ENST00000512845.5_1_4:121737455-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-4|PRDM5;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5;ENST00000507611.1_1_4:121739497-121742479:-|nuORF	ENST00000505484.5_1_4:121737976-121843799:-|nuORF	ENST00000505484.5_1_4:121737976-121843799:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.303124	1036.5917	0.33012	0.00017143	0.44827	0.00023279	0.77839	0.00040422	519.3037713822607	84.352	0.55189	84.149	83.907	84.459	-0.20329	-0.11929	-0.00032251	NaN	40.778	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168890			26059	5274	18030	18067							0.07486315994378856
ILAEYFAR	8	Unmodified	_ILAEYFAR_					0	0	0			REV__ENSG00000204438|ENST00000375896|GPANK1	REV__ENSG00000204438|ENST00000375896|GPANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.26593017578125	2	491.77146	981.528367	-0.813	-0.00039981	2.2902	0.0011262	1.4772	0.00072643	491.77343785856635	37.589	0.98392	37.526	37.052	38.036	-0.063389					48	27	3	0	0	0	0.027866	1	2992	2992		38.806	0	1	529020	+		26060	28604	18031	18068	29947	29947					0.03686375277140996
ILAFFACWL	9	Unmodified	_ILAFFACWL_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.81103515625	2	542.288431	1082.56231	-1.2143	-0.00065852	-1.3193	-0.00071546	-2.5337	-0.001374	542.2867021974411	62.96	0.43156	62.96	62.729	63.161	0					14	10	2	0	0	0	0.024475	1	7332	7332		39.021	0.26789	1	135750			26061	3902	18032	18069	29948	29948					0.024330804445071408
ILAHKTNLKNK	11	Unmodified	_ILAHKTNLKNK_					0	0	0		ENST00000212015.10_1_10:69677007-69677100:+|nuORF	ENST00000212015.10_1_10:69677007-69677100:+|nuORF	ENST00000212015.10_1_10:69677007-69677100:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.26416015625	3	427.266345	1278.7772	-0.45996	-0.00019653	-4.0555	-0.0017328	-4.5154	-0.0019293	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0022	1	5859	5859		36.318	11.192	1	57851000			26062	11142	18033	18070	29949	29949					0.14896718513818996
ILAIVTGLD	9	Unmodified	_ILAIVTGLD_					0	0	0			REV__nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	REV__nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.2652893066406	2	457.781493	913.548434	0.19353	8.8594E-05	-0.20425	-9.3503E-05	-0.010725	-4.9097E-06	457.7812020397958	79.816	0.74992	79.597	79.41	80.16	-0.21923					34	17	3	0	0	0	0.024294	1	9551	9551		21.96	0	1	340430	+		26063	29052	18034	18071	29950	29950					0.08820126217085544
ILAKKLRR	8	Unmodified	_ILAKKLRR_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.3237609863281	2	499.353286	996.692019	1.4412	0.00071965	0.44971	0.00022457	1.8909	0.00094421	499.35354311347766	63.718	0.14124	63.718	63.631	63.772	0					5	3	2	0	0	0	0.027866	1	7476	7476		35.201	15.841	1	211830	+		26064	23316	18035	18072	29951	29951					0.19354017838691107
ILAKQKPLI	9	Unmodified	_ILAKQKPLI_					0	0	0		ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2965698242188	2	512.349877	1022.6852	-0.4218	-0.00021611	0.32361	0.0001658	-0.09819	-5.0308E-05	512.3498649558094	85.341	0.58247	85.283	84.98	85.563	-0.05761					23	13	2	0	0	0	0.024541	1	10693	10693		19.36	0	1	125840			26065	3900	18036	18073	29952	29952					0.17476660167460523
ILALKVKAR	9	Unmodified	_ILALKVKAR_					0	0	0		ENST00000560305.5_1_15:40855021-40855129:-|nuORF	ENST00000560305.5_1_15:40855021-40855129:-|nuORF	ENST00000560305.5_1_15:40855021-40855129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3314208984375	2	506.355494	1010.69644	-0.47769	-0.00024188	1.282	0.00064917	0.80436	0.00040729	506.35612159089294	37.665	0.18679	37.697	37.6	37.787	0.032269					6	4	2	0	0	0	0.024541	1	3034	3034		11.511	4.3177	1	38120			26066	16797	18037	18074	29953	29953					0.19151482261599995
ILALLHTSQ	9	Unmodified	_ILALLHTSQ_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7475891113281	2	498.297842	994.581131	0.25007	0.00012461	-2.6908	-0.0013408	-2.4407	-0.0012162	498.29690191739917	68.358	0.2366	68.128	67.958	68.195	-0.23048					7	5	2	0	0	0	0.024457	1	7871	7871		21.96	1.9631	1	55104			26067	4653	18038	18075	29954	29954					0.08362333339937322
ILALLRHRVR	10	Unmodified	_ILALLRHRVR_					0	0	0			REV__ENST00000481959.1_1_3:49760761-49760899:-|nuORF	REV__ENST00000481959.1_1_3:49760761-49760899:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	623.915771484375	2	623.914573	1245.81459	0.44848	0.00027981	1.3068	0.00081531	1.7552	0.0010951	623.9152006950998	107.69	0.1794	107.68	107.58	107.76	-0.0056458					14	8	2	0	0	0	1.1018	1	13773	13773		11.511	2.8173	1	1781500	+		26068	33471	18039	18076	29955	29955					0.20151854570099204
ILALVEEPL	9	Unmodified	_ILALVEEPL_					0	0	0			REV__ENSG00000135722|ENST00000258200|FBXL8	REV__ENSG00000135722|ENST00000258200|FBXL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.80322265625	2	498.802426	995.590298	-0.076386	-3.8101E-05	1.9532	0.00097428	1.8769	0.00093618	498.8033988625939	52.928	2.1732	52.928	51.836	54.01	0					154	58	5	0	0	0	0.90698	1	5720	5720		31.955	1.4512	1	12555000	+		26069	23573	18040	18077	29956	29956					0.0923268190562112
ILALVEEPL	9	Unmodified	_ILALVEEPL_					0	0	0			REV__ENSG00000135722|ENST00000258200|FBXL8	REV__ENSG00000135722|ENST00000258200|FBXL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.8038024902344	2	498.802426	995.590298	-0.29606	-0.00014768	2.7533	0.0013734	2.4573	0.0012257	498.8036455447494	52.863	1.3878	52.673	52.389	53.777	-0.18982					105	37	5	0	0	0	0.80658	1	5488	5488		38.806	8.9646	1	10595000	+		26070	23573	18040	18077	29957	29957					0.0923268190562112
ILALVGMEAI	10	Oxidation (M)	_ILALVGM(Oxidation (M))EAI_		ILALVGM(1)EAI		ILALVGM(51)EAI	0	0	1		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3035278320312	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.941	1	11146	11146		51.335	7.2187	1	10615000			26071	9097	18041	18078	29958	29958		381			0.06840724545213561
ILANQDYSD	9	Unmodified	_ILANQDYSD_					0	0	0			REV__ENSG00000138686|ENST00000264499|BBS7	REV__ENSG00000138686|ENST00000264499|BBS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7698364257812	2	519.740554	1037.46655	-0.84782	-0.00044065	4.4502	0.002313	3.6024	0.0018723	519.7428448141329	22.196	0.46576	22.196	22.06	22.525	0					17	9	3	0	0	0	0.024457	1	750	750		21.96	0	1	35480	+		26072	23886	18042	18079	29959	29959					-0.050680209326628756
ILANQDYSD	9	Unmodified	_ILANQDYSD_					0	0	0			REV__ENSG00000138686|ENST00000264499|BBS7	REV__ENSG00000138686|ENST00000264499|BBS7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.740554	1037.46655	0.45188	0.00023486	3.4252	0.0017802	3.8771	0.0020151	519.7413680567175	22.559	0.27587	22.357	22.146	22.421	-0.20199	0.090528	-0.0010264	NaN	26.693	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14109	+		26073	23886	18042	18079							-0.050680209326628756
ILAPKRTK	8	Unmodified	_ILAPKRTK_					0	0	0			REV__nc|ENSG00000165682|Q9P126-2|CLEC1B	REV__nc|ENSG00000165682|Q9P126-2|CLEC1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.22991943359375	2	463.810919	925.607286	-0.31538	-0.00014628	-0.69312	-0.00032147	-1.0085	-0.00046775	463.8104599909952	39.068	0.82227	39.092	38.919	39.741	0.023727					51	22	3	0	0	0	0.027866	1	3318	3318		10.265	0	1	2319600	+		26074	19494	18043	18080	29960	29960					0.14150647302085417
ILAPLSKMA	9	Unmodified	_ILAPLSKMA_					0	0	0			REV__ENSG00000117697|ENST00000366977|NSL1	REV__ENSG00000117697|ENST00000366977|NSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.28814697265625	2	472.285889	942.557224	0.20114	9.4994E-05	3.3876	0.0015999	3.5887	0.0016949	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	0.83071	1	11991	11991		37.159	1.9584	1	52660000	+		26075	22370	18044	18081	29961	29961					0.08364776581913702
ILAPLSKMA	9	Unmodified	_ILAPLSKMA_					0	0	0			REV__ENSG00000117697|ENST00000366977|NSL1	REV__ENSG00000117697|ENST00000366977|NSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2879638671875	2	472.285889	942.557224	-0.48925	-0.00023107	4.0657	0.0019202	3.5765	0.0016891	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	0.92825	1	11698	11698		30.504	1.3541	1	45907000	+		26076	22370	18044	18081	29962	29962					0.08364776581913702
ILAPLSKMA	9	Unmodified	_ILAPLSKMA_					0	0	0			REV__ENSG00000117697|ENST00000366977|NSL1	REV__ENSG00000117697|ENST00000366977|NSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.28814697265625	2	472.285889	942.557224	-0.32971	-0.00015572	3.8668	0.0018262	3.537	0.0016705	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.83071	1	11672	11672		37.159	0.13063	1	42351000	+		26077	22370	18044	18081	29963	29963					0.08364776581913702
ILAPPIET	8	Unmodified	_ILAPPIET_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2196044921875	2	427.255111	852.49567	0.044445	1.8989E-05	-3.354	-0.001433	-3.3096	-0.001414	427.25367976376776	27.396	0.51262	27.154	26.954	27.466	-0.24217					21	11	2	0	0	0	0.027866	1	1530	1530		12.959	0	1	131260	+		26078	21110	18045	18082	29964	29964					0.0635216815427384
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.8081359863281	2	492.808042	983.601532	-0.66897	-0.00032968	0.30268	0.00014916	-0.36629	-0.00018051	492.80814805118496	51.961	0.89975	51.842	51.54	52.44	-0.11875					62	23	6	0	0	0	0.034407	3	5366	5359;5366;5383		138.06	52.902	1	3370900			26079	5548	18046	18083	29965;29966;29967	29966					0.10907503999749224
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.807861328125	2	492.808042	983.601532	-1.7992	-0.00088666	1.3657	0.00067301	-0.43354	-0.00021365	492.80863919873406	52.196	0.90186	51.927	51.691	52.593	-0.26903					55	23	4	0	0	0	0.46427	1	5418	5418		61.691	8.7546	1	3292300			26080	5548	18046	18083	29968	29968					0.10907503999749224
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.808042	983.601532	0.16165	7.9662E-05	-0.10248	-5.0502E-05	0.059171	2.916E-05	492.8076290724427	51.961	0.575	51.961	51.736	52.311	0	0.04186	-0.00033094	NaN	138.06	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686710			26081	5548	18046	18083							0.10907503999749224
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.808042	983.601532	-1.0135	-0.00049945	1.161	0.00057215	0.14751	7.2694E-05	492.8081702734302	51.858	0.47526	51.95	51.684	52.16	0.091938	0.031226	0.00091436	NaN	138.06	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511440			26082	5548	18046	18083							0.10907503999749224
ILAQEIVKA	9	Unmodified	_ILAQEIVKA_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.808042	983.601532	0.15631	7.7031E-05	-0.61954	-0.00030532	-0.46323	-0.00022829	492.8076248116601	52.098	0.76615	51.914	51.669	52.435	-0.18405	-0.004842	-0.00084057	NaN	138.06	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3381000			26083	5548	18046	18083							0.10907503999749224
ILAQGKQIE	9	Unmodified	_ILAQGKQIE_					0	0	0			REV__NMI|p.P97S|1|0.15|ENSG00000123609|chr2:151278879-151278879|G/A|missense_variant	REV__NMI|p.P97S|1|0.15|ENSG00000123609|chr2:151278879-151278879|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7867431640625	2	500.295299	998.576045	0.28373	0.00014195	0.10445	5.2258E-05	0.38818	0.00019421	500.2943514628427	55.085	0.35546	55.085	54.794	55.149	0					16	9	2	0	0	0	0.024021	1	6027	6027		79.451	35.334	1	142170	+		26084	22712	18047	18084	29969	29969					0.07670029477321805
ILARAKNGT	9	Unmodified	_ILARAKNGT_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2876892089844	2	472.287808	942.561064	-0.32971	-0.00015572	-0.19839	-9.3697E-05	-0.5281	-0.00024942	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.92825	1	11794	11794		30.504	3.7075	1	42351000			26085	3038	18048	18085	29970	29970					0.08748582399982752
ILARDILEI	9	Unmodified	_ILARDILEI_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3262939453125	2	528.326599	1054.63865	-0.26021	-0.00013747	-0.074461	-3.934E-05	-0.33467	-0.00017681	528.3264141674682	72.074	1.3157	72.074	71.718	73.034	0					71	32	4	0	0	0	0.03666	3	8766	8753;8766;8777		136.27	22.857	1	2600000			26086	2073	18049	18086	29971;29972;29973	29972					0.11351175545519254
ILARDILEI	9	Unmodified	_ILARDILEI_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3259887695312	2	528.326599	1054.63865	0.37534	0.0001983	-0.63076	-0.00033325	-0.25542	-0.00013494	528.3260681883679	72.448	1.2725	72.166	71.807	73.08	-0.28124					69	31	4	0	0	0	0.020687	2	8788	8776;8788		148.99	23.173	1	2115000			26087	2073	18049	18086	29974;29975	29975					0.11351175545519254
ILARDILEI	9	Unmodified	_ILARDILEI_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3258056640625	2	528.326599	1054.63865	0.61662	0.00032578	-0.96051	-0.00050746	-0.34388	-0.00018168	528.3258664808285	72.179	1.5277	72.189	71.69	73.217	0.0097656					84	38	4	0	0	0	0.067814	1	8705	8705		122.18	17.429	1	2411300			26088	2073	18049	18086	29976	29976					0.11351175545519254
ILARYYHGD	9	Unmodified	_ILARYYHGD_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.8296508789062	2	554.282723	1106.55089	0.039023	2.163E-05	-2.5147	-0.0013939	-2.4757	-0.0013722	554.281283151223	87.367	0.6924	87.331	87.152	87.844	-0.035362					21	16	2	0	0	0	0.024436	1	10933	10933		30.504	4.9296	1	90225	+		26089	27316	18050	18087	29977	29977					0.001879746747590616
ILASFMLTG	9	Unmodified	_ILASFMLTG_					0	0	0		nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ	nc|ENSG00000198265|P42694-2|HELZ	nc|ENSG00000198265|P42694-2|HELZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7951354980469	2	476.762246	951.50994	0.83224	0.00039678	-1.1457	-0.0005462	-0.31341	-0.00014942	476.761328493036	69.735	0.8987	69.735	69.094	69.993	0					37	22	2	0	0	0	0.024487	1	8437	8437		40.573	16.37	1	112420			26090	10115	18051	18088	29978	29978					0.0322449731091865
ILASMAAR	8	Unmodified	_ILASMAAR_					0	0	0		nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	nc|ENSG00000182872|P0DW28|RBM10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.22833251953125	2	416.739105	831.463658	-0.14936	-6.2245E-05	-3.5225	-0.001468	-3.6719	-0.0015302	416.73740704540603	55.171	0.61773	54.94	54.638	55.255	-0.23087					36	17	3	0	0	0	0.027866	1	5896	5896		24.203	0	1	817640			26091	18572	18052	18089	29979	29979					0.0411847719948355
ILASQGLVEV	10	Unmodified	_ILASQGLVEV_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7898559570312	2	514.802957	1027.59136	-0.31374	-0.00016151	-1.1265	-0.00057991	-1.4402	-0.00074143	514.8021579672313	41.717	0.29497	41.585	41.421	41.716	-0.13219					13	7	2	0	0	0	0.03519	1	3743	3743		58.23	0	1	181950	+		26092	36838	18053	18090	29980	29980					0.0786689627452688
ILASRPLIN	9	Unmodified	_ILASRPLIN_					0	0	0		nc|ENSG00000144395|Q8NCX0-2|CCDC150	nc|ENSG00000144395|Q8NCX0-2|CCDC150	nc|ENSG00000144395|Q8NCX0-2|CCDC150	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.298095703125	2	498.813659	995.612765	-0.61142	-0.00030498	0.28394	0.00014163	-0.32748	-0.00016335	498.81354335662763	62.276	0.35329	62.043	61.76	62.113	-0.23309					19	9	3	0	0	0	0.023817	1	7171	7171		60.972	2.19	1	485250			26093	18356	18054	18091	29981	29981					0.11478326093902069
ILASSFSISV	10	Unmodified	_ILASSFSISV_					0	0	0			REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|53	REV__chr1:245764149-245816795|230|20.85|0.05|8.85|-|2|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2357177734375	2	512.289682	1022.56481	0.1723	8.8266E-05	1.685	0.00086321	1.8573	0.00095148	512.7921493456082	57.155	0.87403	56.953	56.557	57.431	-0.20209					68	23	4	0	0	0	0.03519	1	6293	6293		31.53	0	1	917960	+		26094	19327	18055	18092	29982	29982					0.05443207383200388
ILATSKYEE	9	Unmodified	_ILATSKYEE_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2391357421875	2	527.276772	1052.53899	-0.41131	-0.00021687	1.1057	0.00058303	0.69443	0.00036616	527.2760521777147	76.402	0.35719	76.134	75.854	76.211	-0.26806					12	8	2	0	0	0	0.024436	1	9065	9065		47.916	1.9636	1	55223			26095	10173	18056	18093	29983	29983					0.014823131409002599
ILAVLKAW	8	Unmodified	_ILAVLKAW_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.1557312011719	2	457.297114	912.579674	-0.27103	-0.00012394	0.5688	0.00026011	0.29777	0.00013617	457.2976288353025	39.952	0.48683	39.802	39.591	40.078	-0.1497					16	12	2	0	0	0	0.027866	1	3410	3410		26.796	7.4361	1	122040			26096	4352	18057	18094	29984	29984					0.11988744041843802
ILAVLKAW	8	Unmodified	_ILAVLKAW_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.15582275390625	2	457.297114	912.579674	-0.21023	-9.6136E-05	2.2891	0.0010468	2.0788	0.00095065	457.2967077858158	40.136	0.52913	39.911	39.658	40.187	-0.225					16	13	2	0	0	0	0.027866	1	3421	3421		12.207	4.5166	1	140760			26097	4352	18057	18094	29985	29985					0.11988744041843802
ILAYKMLA	8	Unmodified	_ILAYKMLA_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.7734680175781	2	461.775157	921.53576	0.44825	0.00020699	-4.4364	-0.0020486	-3.9881	-0.0018416	461.7731441179029	101.84	0.77296	101.71	101.45	102.23	-0.13156					46	18	4	0	0	0	1.0017	1	12654	12654		37.028	3.5129	1	575760			26098	1686	18058	18095	29986	29986					0.07185391553196041
ILAYSIFITV	10	Unmodified	_ILAYSIFITV_					0	0	0			REV__ENSG00000197125|ENST00000642064|OR8B8	REV__ENSG00000197125|ENST00000642064|OR8B8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.3331909179688	2	570.339175	1138.6638	0.50993	0.00029084	2.601	0.0014834	3.1109	0.0017743	570.341227703331	101.26	0.30006	101.13	100.98	101.28	-0.12576					10	6	2	0	0	0	0.03519	1	12567	12567		20.947	0.95016	1	16260	+		26099	28268	18059	18096	29987	29987					0.10001230348075296
ILCESLFCSI	10	Unmodified	_ILCESLFCSI_					0	0	0			REV__ENST00000534968.5_1_1:160511120-160511249:-|nuORF	REV__ENST00000534968.5_1_1:160511120-160511249:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2775268554688	2	564.277403	1126.54025	-1.1572	-0.00065297	1.3668	0.00077127	0.20965	0.0001183	564.2779913033235	90.761	0.95625	90.605	90.348	91.304	-0.1552					57	22	4	0	0	0	0.57825	1	11129	11129		79.451	15.244	1	1981100	+		26100	34659	18060	18097	29988	29988					-0.017955120861870455
ILCESLFCSI	10	Unmodified	_ILCESLFCSI_					0	0	0			REV__ENST00000534968.5_1_1:160511120-160511249:-|nuORF	REV__ENST00000534968.5_1_1:160511120-160511249:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2772827148438	2	564.277403	1126.54025	-0.57731	-0.00032576	0.66164	0.00037335	0.084334	4.7588E-05	564.2776143998179	90.76	0.90979	90.635	90.374	91.284	-0.12513					49	21	3	0	0	0	0.79525	1	11123	11123		60.972	0	1	2104200	+		26101	34659	18060	18097	29989	29989					-0.017955120861870455
ILCKEIHST	9	Unmodified	_ILCKEIHST_					0	0	0		ENST00000598457.5_1_19:48593521-48593623:-|nuORF	ENST00000598457.5_1_19:48593521-48593623:-|nuORF	ENST00000598457.5_1_19:48593521-48593623:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.301513671875	2	522.281334	1042.54812	-1.037	-0.00054161	1.5472	0.00080806	0.51017	0.00026645	522.2806599300189	60.773	0.41854	60.845	60.604	61.023	0.072422					25	10	5	0	0	0	0.024319	1	6910	6910		66.429	28.618	1	143590			26102	17470	18061	18098	29990	29990					0.028543832255763846
ILCKEIHST	9	Unmodified	_ILCKEIHST_					0	0	0		ENST00000598457.5_1_19:48593521-48593623:-|nuORF	ENST00000598457.5_1_19:48593521-48593623:-|nuORF	ENST00000598457.5_1_19:48593521-48593623:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.281334	1042.54812	-0.41615	-0.00021735	0.66189	0.00034569	0.24574	0.00012835	522.2825458513086	61.155	0.38837	60.949	60.62	61.008	-0.20599	0.055583	-0.00041031	NaN	66.429	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44432			26103	17470	18061	18098							0.028543832255763846
ILCLGNHCSL	10	Unmodified	_ILCLGNHCSL_					0	0	0		PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant;nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.769287109375	2	536.767537	1071.52052	-0.21374	-0.00011473	2.7697	0.0014867	2.556	0.001372	536.7690591095416	87.146	2.0835	87.146	86.343	88.426	0					53	16	4	0	0	0	0.62431	1	10970	10970		74.255	0.28031	1	4369100			26104	3498	18062	18099	29991	29991					-0.012378433062849581
ILCLGNHCSL	10	Unmodified	_ILCLGNHCSL_					0	0	0		PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant;nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	PLCL1|p.L945Rfs*27|1|0.14|ENSG00000115896|chr2:198088976-198088977|TT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.7689819335938	2	536.767537	1071.52052	-0.10563	-5.67E-05	2.6586	0.0014271	2.553	0.0013704	536.7689990577634	87.091	1.4179	87.112	86.417	87.834	0.021263					62	24	4	0	0	0	0.50466	1	10861	10861		87.754	15.877	1	4286000			26105	3498	18062	18099	29992	29992					-0.012378433062849581
ILCLIRNL	8	Unmodified	_ILCLIRNL_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.29522705078125	2	479.29933	956.584108	-0.20541	-9.8454E-05	-2.9738	-0.0014253	-3.1792	-0.0015238	479.29772652342143	70.058	1.3879	70.07	69.627	71.015	0.012413					72	35	3	0	0	0	0.94001	1	8361	8361		46.766	2.2354	1	4766400	+		26106	23404	18063	18100	29993	29993					0.10407885193103539
ILCNHSNLD	9	Unmodified	_ILCNHSNLD_					0	0	0			REV__nc|ENSG00000182541|P53671-2|LIMK2	REV__nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8176879882812	2	514.745116	1027.47568	0.17196	8.8516E-05	-4.0782	-0.0020993	-3.9063	-0.0020107	514.7428969292238	72.032	0.89458	72.042	71.841	72.736	0.0097733					36	22	2	0	0	0	0.024025	1	8758	8758		44.377	17.581	1	187230	+		26107	27486	18064	18101	29994	29994					-0.03695950847986751
ILCNVENQL	9	Unmodified	_ILCNVENQL_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.322998046875	2	523.270967	1044.52738	-0.57399	-0.00030035	0.90188	0.00047193	0.32789	0.00017157	523.2708998784707	67.56	0.79884	67.56	66.883	67.682	0					29	19	3	0	0	0	0.023454	1	8028	8028		62.107	9.1707	1	388770	+		26108	24018	18065	18102	29995	29995					0.006897928459011382
ILCNVENQL	9	Unmodified	_ILCNVENQL_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.270967	1044.52738	0.67648	0.00035398	5.1849	0.0027131	5.8613	0.0030671	523.2735977659578	68.06	0.40783	67.805	67.579	67.987	-0.25516	0.040899	0.00080309	NaN	62.107	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336310	+		26109	24018	18065	18102							0.006897928459011382
ILCNVENQL	9	Unmodified	_ILCNVENQL_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.270967	1044.52738	0.38842	0.00020325	4.6256	0.0024205	5.0141	0.0026237	523.2733311079762	68.116	0.44679	67.882	67.555	68.001	-0.23375	0.11815	0.00021784	NaN	62.107	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292800	+		26110	24018	18065	18102							0.006897928459011382
ILCNVENQL	9	Unmodified	_ILCNVENQL_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.270967	1044.52738	0.27017	0.00014137	6.0855	0.0031844	6.3557	0.0033258	523.2736944248545	68.089	0.44299	67.851	67.466	67.909	-0.23814	0.086654	0.0017457	NaN	62.107	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315820	+		26111	24018	18065	18102							0.006897928459011382
ILCPGASPSL	10	Unmodified	_ILCPGASPSL_					0	0	0			REV__ENST00000505907.1_1_4:6622027-6622135:+|nuORF	REV__ENST00000505907.1_1_4:6622027-6622135:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.28515625	2	479.257328	956.500103	-0.89969	-0.00043118	0.97343	0.00046653	0.073744	3.5343E-05	479.2576548980578	55.482	0.63708	55.58	55.294	55.931	0.098015					39	16	3	0	0	0	0.03519	1	6068	6068		29.15	9.1528	1	1670800	+		26112	34015	18066	18103	29996	29996					0.020113093055329045
ILCPHAVFF	9	Unmodified	_ILCPHAVFF_					0	0	0		nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3238525390625	2	523.778231	1045.54191	0.47408	0.00024831	1.7737	0.00092904	2.2478	0.0011774	523.7781215241039	49.762	0.74934	49.581	49.345	50.094	-0.18071					32	19	3	0	0	0	0.024475	1	5063	5063		39.021	5.5285	1	950570			26113	18108	18067	18104	29997	29997					0.02095909784725336
ILCPTSYHF	9	Unmodified	_ILCPTSYHF_					0	0	0		ENST00000603027.5_2_10:75562299-75563341:-|nuORF	ENST00000603027.5_2_10:75562299-75563341:-|nuORF	ENST00000603027.5_2_10:75562299-75563341:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7647705078125	2	540.762778	1079.511	-0.47149	-0.00025496	3.54	0.0019143	3.0685	0.0016593	540.7645879283925	49.966	1.8384	49.785	49.383	51.222	-0.18071					122	48	4	0	0	0	0.60698	1	5027	5027		52.299	4.3836	1	11458000			26114	17538	18068	18105	29998	29998					-0.025572883201675722
ILCQTLLQI	9	Unmodified	_ILCQTLLQI_					0	0	0		ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.81201171875	2	522.809728	1043.6049	-0.37468	-0.00019589	3.587	0.0018753	3.2124	0.0016795	522.8116264100595	95.269	1.298	95.132	94.638	95.936	-0.13689					80	29	4	0	0	0	0.83071	1	11750	11750		37.159	1.5408	1	739230			26115	12384	18069	18106	29999	29999					0.0848443078211858
ILCQTLLQI	9	Unmodified	_ILCQTLLQI_					0	0	0		ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.809728	1043.6049	-0.7229	-0.00037794	2.9984	0.0015676	2.2755	0.0011896	522.8117678249298	95.14	1.2797	95.14	94.875	96.155	0	-0.022228	0.0004033	NaN	37.159	55	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627320			26116	12384	18069	18106							0.0848443078211858
ILCQTLLQI	9	Unmodified	_ILCQTLLQI_					0	0	0		ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.809728	1043.6049	0.0011882	6.2119E-07	2.2795	0.0011917	2.2807	0.0011924	522.8114438304581	95.122	1.2428	95.125	94.782	96.025	0.0033798	-0.036524	-0.0003484	NaN	37.159	44	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650700			26117	12384	18069	18106							0.0848443078211858
ILCQTLLQI	9	Unmodified	_ILCQTLLQI_					0	0	0		ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.809728	1043.6049	0.12123	6.3383E-05	1.9668	0.0010283	2.088	0.0010916	522.8113871520301	95.157	1.6319	95.161	94.446	96.078	0.0041199	-0.00063496	-0.00067534	NaN	37.159	55	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654220			26118	12384	18069	18106							0.0848443078211858
ILCQTLLQI	9	Unmodified	_ILCQTLLQI_					0	0	0		ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	522.809728	1043.6049	0.70596	0.00036908	2.205	0.0011528	2.911	0.0015219	522.8110740527467	95.321	1.3397	95.199	94.727	96.067	-0.12251	0.03708	-0.00042627	NaN	37.159	81	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	788330			26119	12384	18069	18106							0.0848443078211858
ILCQTLLQI	9	Unmodified	_ILCQTLLQI_					0	0	0		ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	ENST00000334398.7_1_X:154721001-154721139:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.809728	1043.6049	-0.16958	-8.8657E-05	2.3552	0.0012313	2.1857	0.0011427	522.8114006802242	95.366	1.3387	95.214	94.839	96.177	-0.15186	0.05184	-0.00026917	NaN	37.159	71	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	730800			26120	12384	18069	18106							0.0848443078211858
ILCTRIGKC	9	Unmodified	_ILCTRIGKC_					0	0	0			REV__nc|ENSG00000160993|Q9NXW9-2|ALKBH4	REV__nc|ENSG00000160993|Q9NXW9-2|ALKBH4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.779052734375	2	503.780447	1005.54634	-0.46554	-0.00023453	-3.2412	-0.0016329	-3.7067	-0.0018674	503.7786416227463	23.056	2.3766	23.056	21.146	23.523	0					94	51	3	0	0	0	0.70186	1	849	849		45.952	5.3793	1	711780	+		26121	25368	18070	18107	30000	30000					0.043790509359837415
ILCTRIGKC	9	Unmodified	_ILCTRIGKC_					0	0	0			REV__nc|ENSG00000160993|Q9NXW9-2|ALKBH4	REV__nc|ENSG00000160993|Q9NXW9-2|ALKBH4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.77911376953125	2	503.780447	1005.54634	0.064875	3.2683E-05	-4.1058	-0.0020684	-4.0409	-0.0020357	503.77840521492055	24.025	2.611	24.103	23.352	25.963	0.077791					161	59	5	0	0	0	0.85329	1	925	925		35.618	5.1146	1	908260	+		26122	25368	18070	18107	30001	30001					0.043790509359837415
ILCTYALQ	8	Unmodified	_ILCTYALQ_					0	0	0		nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;ENSG00000186335|ENST00000335244|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	nc|ENSG00000186335|Q495M3-3|SLC36A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7606506347656	2	462.746596	923.478639	-0.055354	-2.5615E-05	-4.4389	-0.0020541	-4.4943	-0.0020797	462.7444840391318	48.741	0.49016	48.807	48.452	48.943	0.066795					21	13	2	0	0	0	0.027866	1	4918	4918		44.531	11.015	1	173010			26123	9540	18071	18108	30002	30002					0.013839242768312943
ILCVKAFNI	9	Unmodified	_ILCVKAFNI_					0	0	0			REV__ENST00000512029.1_1_5:118832263-118835290:+|nuORF	REV__ENST00000512029.1_1_5:118832263-118835290:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7644958496094	2	510.799163	1019.58377	-0.75088	-0.00038355	3.1019	0.0015844	2.351	0.0012009	510.80070528750485	25.695	0.2971	25.66	25.556	25.853	-0.034395					9	6	2	0	0	0	0.024436	1	1249	1249		10.866	0	1	24933	+		26124	34130	18072	18109	30003	30003					0.07476465473246208
ILDAGGHNV	9	Unmodified	_ILDAGGHNV_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.23529052734375	2	448.235242	894.45593	-0.83988	-0.00037646	0.63236	0.00028344	-0.20752	-9.3018E-05	448.2354692965165	37.721	1.3113	37.721	37.486	38.797	0					74	36	5	0	0	0	0.091713	2	3087	3087;3097		113.41	39.437	1	9123000			26125	8399	18073	18110	30004;30005	30004					0.004480412035718473
ILDAGGHNV	9	Unmodified	_ILDAGGHNV_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2353210449219	2	448.235242	894.45593	-0.70618	-0.00031653	0.58016	0.00026005	-0.12602	-5.6486E-05	448.2354509022782	37.638	1.2446	37.573	37.304	38.548	-0.064762					77	34	5	0	0	0	0.067814	2	3073	3062;3073		122.18	42.725	1	8928300			26126	8399	18073	18110	30006;30007	30007					0.004480412035718473
ILDAGGHNV	9	Unmodified	_ILDAGGHNV_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2351379394531	2	448.235242	894.45593	-0.69248	-0.00031039	0.50668	0.00022711	-0.1858	-8.3283E-05	448.23543435550704	37.771	1.5149	37.803	37.45	38.965	0.032269					87	41	4	0	0	0	0.12602	3	3042	3032;3042;3054		104.75	25.296	1	7869900			26127	8399	18073	18110	30008;30009;30010	30009					0.004480412035718473
ILDAGGHNV	9	Unmodified	_ILDAGGHNV_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.23553466796875	2	448.235242	894.45593	-0.093041	-4.1704E-05	0.097954	4.3907E-05	0.0049137	2.2025E-06	448.2352226889266	37.822	1.1397	37.643	37.282	38.422	-0.17929					57	31	3	0	0	0	0.067814	3	3078	3055;3067;3078		122.18	39.871	1	7804600			26128	8399	18073	18110	30011;30012;30013	30013					0.004480412035718473
ILDAGGHNV	9	Unmodified	_ILDAGGHNV_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2353515625	2	448.235242	894.45593	-0.91675	-0.00041092	0.98356	0.00044087	0.066814	2.9948E-05	448.2355649129109	37.887	1.229	37.665	37.388	38.617	-0.22148					74	33	5	0	0	0	0.021872	3	3071	3061;3071;3083		148.04	50.57	1	7628100			26129	8399	18073	18110	30014;30015;30016	30015					0.004480412035718473
ILDAGGHNV	9	Unmodified	_ILDAGGHNV_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2354431152344	2	448.235242	894.45593	-0.9557	-0.00042838	1.1229	0.00050332	0.16719	7.4938E-05	448.23561988315083	37.884	1.3652	37.665	37.344	38.71	-0.21849					89	37	5	0	0	0	0.10174	4	3057	3046;3057;3069;3082		110.12	35.603	1	7294200			26130	8399	18073	18110	30017;30018;30019;30020	30018					0.004480412035718473
ILDAQTAFV	9	Unmodified	_ILDAQTAFV_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.26885986328125	2	489.26875	976.522947	0.4453	0.00021787	-0.28468	-0.00013929	0.16061	7.8582E-05	489.26850544069237	72.01	0.97215	72.01	71.642	72.614	0					58	24	3	0	0	0	0.18915	2	8748	8748;8772		90.777	32.965	1	1265300			26131	2482	18074	18111	30021;30022	30021					0.03374651694662134
ILDAQTAFV	9	Unmodified	_ILDAQTAFV_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2685852050781	2	489.26875	976.522947	0.58818	0.00028778	-0.29772	-0.00014566	0.29046	0.00014211	489.26846766841885	72.321	0.89123	72.039	71.695	72.586	-0.28124					55	22	3	0	0	0	0.021872	2	8765	8765;8783		148.04	60.289	1	1399700			26132	2482	18074	18111	30023;30024	30023					0.03374651694662134
ILDAQTAFV	9	Unmodified	_ILDAQTAFV_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.26875	976.522947	-0.31067	-0.000152	0.26615	0.00013022	-0.044522	-2.1783E-05	489.268847328501	72.349	0.83939	72.072	71.786	72.626	-0.2769	0.020021	0.00043604	NaN	148.04	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286970			26133	2482	18074	18111							0.03374651694662134
ILDAQTAFV	9	Unmodified	_ILDAQTAFV_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.26875	976.522947	-0.11105	-5.4335E-05	-0.21726	-0.0001063	-0.32831	-0.00016063	489.2686702957208	72.257	1.0461	72.059	71.707	72.753	-0.19811	0.0071489	-3.6991E-05	NaN	148.04	40	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342360			26134	2482	18074	18111							0.03374651694662134
ILDCELNW	8	Carbamidomethyl (C)	_ILDC(Carbamidomethyl (C))ELNW_	ILDC(1)ELNW		ILDC(56)ELNW		0	1	0		ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.7476806640625	2	531.749867	1061.48518	0.099476	5.2896E-05	-2.9944	-0.0015923	-2.8949	-0.0015394	531.7480889392895	80.255	0.62064	80.017	79.789	80.409	-0.23784					34	14	3	0	0	0	0.845	1	9604	9604		55.504	6.0627	1	463300			26135	9120	18075	18112	30025	30025	114				-0.04310182562448972
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.75091552734375	2	469.750724	937.486896	0.096599	4.5377E-05	-0.28664	-0.00013465	-0.19004	-8.9273E-05	469.75053184999325	54.119	1.7012	54.119	53.763	55.464	0					109	48	4	0	0	0	0.062871	4	5877	5877;5887;5899;5912		123.99	51.072	1	10992000			26136	5243	18076	18113	30026;30027;30028;30029	30026					0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.7510681152344	2	469.750724	937.486896	0.35944	0.00016885	-0.5079	-0.00023859	-0.14846	-6.9741E-05	469.7504089355473	54.183	1.7013	54.035	53.711	55.413	-0.14723					117	48	4	0	0	0	0.10076	4	5884	5861;5873;5884;5895		110.34	36.362	1	10362000			26137	5243	18076	18113	30030;30031;30032;30033	30032					0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.7509460449219	2	469.750724	937.486896	0.72202	0.00033917	-0.875	-0.00041103	-0.15298	-7.1864E-05	469.7502258095601	53.888	1.6277	53.986	53.667	55.294	0.098015					114	46	5	0	0	0	0.040175	3	5774	5774;5784;5796		133.47	55.202	1	12226000			26138	5243	18076	18113	30034;30035;30036	30034					0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.750724	937.486896	-0.58374	-0.00027421	0.76192	0.00035791	0.17818	8.3701E-05	469.7509581626312	54.208	0.86633	54.072	53.867	54.734	-0.13617	0.013919	0.001133	NaN	133.47	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2124600			26139	5243	18076	18113							0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.750724	937.486896	0.11659	5.4767E-05	-0.073889	-3.4709E-05	0.042698	2.0057E-05	469.75060825833367	54.335	0.87934	54.089	53.891	54.77	-0.2453	0.031799	0.00034779	NaN	133.47	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2385200			26140	5243	18076	18113							0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	469.750724	937.486896	0.0045301	2.128E-06	-0.014737	-6.9226E-06	-0.010207	-4.7946E-06	469.75060019670315	54.242	1.055	54.044	53.857	54.912	-0.19739	-0.013285	0.00040336	NaN	133.47	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1815300			26141	5243	18076	18113							0.015651945178206006
ILDDIIASV	9	Unmodified	_ILDDIIASV_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.77685546875	2	479.776408	957.538263	0.59286	0.00028444	3.0924	0.0014836	3.6852	0.0017681	479.7779077586707	86.005	1.7104	85.809	85.301	87.012	-0.19508					88	39	3	0	0	0	0.25032	1	10427	10427		82.305	13.518	1	554990			26142	8227	18077	18114	30037	30037					0.057795184918632
ILDDIIASV	9	Unmodified	_ILDDIIASV_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7772521972656	2	479.776408	957.538263	0.57933	0.00027795	2.2866	0.001097	2.8659	0.001375	479.77781162025775	85.935	1.6683	85.785	85.327	86.996	-0.14967					90	38	5	0	0	0	0.31247	1	10439	10439		73.975	7.5455	1	631070			26143	8227	18077	18114	30038	30038					0.057795184918632
ILDDLSLTGE	10	Unmodified	_ILDDLSLTGE_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.8265991210938	2	538.279512	1074.54447	-0.56868	-0.00030611	1.7108	0.00092088	1.1421	0.00061477	538.2801192029303	55.1	0.88469	54.894	54.575	55.459	-0.20613					58	24	4	0	0	0	0.03519	1	5898	5898		19.104	0	1	2072600			26144	4917	18078	18115	30039	30039					0.010179919327129028
ILDDSHLLV	9	Unmodified	_ILDDSHLLV_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.7874145507812	2	512.787307	1023.56006	-0.31546	-0.00016176	0.055886	2.8658E-05	-0.25957	-0.00013311	512.7871401553738	66.553	0.40279	66.272	65.981	66.384	-0.28149					25	12	3	0	0	0	0.70186	2	7892	7892;7899		45.952	7.1458	1	1776300			26145	961	18079	18116	30040;30041	30040					0.0492232324043016
ILDDSHLLV	9	Unmodified	_ILDDSHLLV_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7862548828125	2	512.787307	1023.56006	-0.4564	-0.00023404	0.16256	8.3356E-05	-0.29384	-0.00015068	512.7872901743644	66.581	0.50575	66.336	65.972	66.477	-0.24517					38	13	4	0	0	0	0.17455	2	7632	7621;7632		94.006	8.0972	1	2448600			26146	961	18079	18116	30042;30043	30043					0.0492232324043016
ILDDYQQT	8	Unmodified	_ILDDYQQT_					0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.3345642089844	2	498.237647	994.460741	1.2763	0.00063589	-0.99683	-0.00049666	0.27945	0.00013923	498.2370951932531	73.85	0.72662	73.85	73.655	74.382	0					24	16	2	0	0	0	0.027866	1	9095	9095		37.159	1.5408	1	483220	+		26147	20691	18080	18117	30044	30044					-0.03671119444334181
ILDDYQQT	8	Unmodified	_ILDDYQQT_					0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.33465576171875	2	498.237647	994.460741	0.14497	7.223E-05	-0.041146	-2.05E-05	0.10383	5.173E-05	498.2375678483188	74.141	0.66563	73.882	73.744	74.409	-0.25887					26	15	2	0	0	0	0.027866	1	9100	9100		60.972	28.16	1	553180	+		26148	20691	18080	18117	30045	30045					-0.03671119444334181
ILDDYQQT	8	Unmodified	_ILDDYQQT_					0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.3343811035156	2	498.237647	994.460741	-0.36965	-0.00018418	0.68664	0.00034211	0.31699	0.00015794	498.23790626415166	73.893	0.76741	73.903	73.713	74.481	0.0096512					31	17	2	0	0	0	0.027866	1	9024	9024		65.803	5.5092	1	530360	+		26149	20691	18080	18117	30046	30046					-0.03671119444334181
ILDEAIYKV	9	Unmodified	_ILDEAIYKV_					0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.3046875	2	532.305332	1062.59611	-0.58415	-0.00031095	0.092562	4.9271E-05	-0.49159	-0.00026167	532.3052790505436	61.17	1.2087	60.957	60.643	61.852	-0.21339					57	31	2	0	0	0	0.014034	1	7033	7033		166.68	61.932	1	3867000			26150	7585	18081	18118	30047	30047					0.06731780417271693
ILDETVNSV	9	Unmodified	_ILDETVNSV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2611999511719	2	495.261122	988.507691	-0.78778	-0.00039016	0.85078	0.00042136	0.063007	3.1205E-05	495.26146159705735	57.71	0.5523	57.532	57.242	57.795	-0.17776					37	13	4	0	0	0	0.021872	2	6313	6313;6323		148.04	36.487	1	3551400			26151	5081	18082	18119	30048;30049	30048					0.012977401068155814
ILDETVNSV	9	Unmodified	_ILDETVNSV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2616882324219	2	495.261122	988.507691	0.074819	3.7055E-05	-0.075201	-3.7244E-05	-0.00038263	-1.895E-07	495.2610169588719	57.768	0.57016	57.578	57.259	57.829	-0.19018					41	14	4	0	0	0	0.014034	2	6316	6316;6327		166.68	75.902	1	4060100			26152	5081	18082	18119	30050;30051	30050					0.012977401068155814
ILDETVNSV	9	Unmodified	_ILDETVNSV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.260986328125	2	495.261122	988.507691	-0.44746	-0.00022161	0.38437	0.00019036	-0.063094	-3.1248E-05	495.26120380275125	57.838	0.47281	57.604	57.349	57.822	-0.23363					32	11	5	0	0	0	0.014034	2	6317	6317;6328		166.68	70.488	1	4190100			26153	5081	18082	18119	30052;30053	30052					0.012977401068155814
ILDETVNSV	9	Unmodified	_ILDETVNSV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.261122	988.507691	0.18901	9.361E-05	0.067987	3.3671E-05	0.257	0.00012728	495.2609965520721	57.458	0.33951	57.458	57.227	57.567	0	-0.058299	-0.00032777	NaN	166.68	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937840			26154	5081	18082	18119							0.012977401068155814
ILDETVNSV	9	Unmodified	_ILDETVNSV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.261122	988.507691	0.30606	0.00015158	0.16031	7.9396E-05	0.46637	0.00023098	495.2611487220371	57.665	0.37797	57.49	57.268	57.646	-0.1749	-0.026433	-0.00023632	NaN	166.68	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	619520			26155	5081	18082	18119							0.012977401068155814
ILDETVNSV	9	Unmodified	_ILDETVNSV_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.261122	988.507691	-0.36844	-0.00018247	1.0405	0.00051534	0.67209	0.00033286	495.2615376952986	57.342	0.33748	57.437	57.165	57.503	0.09531	-0.079436	0.00063556	NaN	166.68	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818080			26156	5081	18082	18119							0.012977401068155814
ILDEVIMGY	9	Oxidation (M)	_ILDEVIM(Oxidation (M))GY_		ILDEVIM(1)GY		ILDEVIM(110)GY	0	0	1		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7673950195312	2	534.767726	1067.5209	-0.15544	-8.3125E-05	0.31124	0.00016644	0.15579	8.3314E-05	534.7676942904136	74.448	0.87537	74.173	73.887	74.763	-0.27573					47	20	4	0	0	0	0.11848	1	8764	8764		106.42	32.44	1	948130			26157	5213	18083	18120	30054	30054		212			-0.010161451054500503
ILDEVIMGY	9	Oxidation (M)	_ILDEVIM(Oxidation (M))GY_		ILDEVIM(1)GY		ILDEVIM(120)GY	0	0	1		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.7680053710938	2	534.767726	1067.5209	0.030504	1.6312E-05	0.48984	0.00026195	0.52034	0.00027826	534.7676569889946	74.199	1.0897	74.016	73.889	74.979	-0.18279					42	25	3	0	0	0	0.074956	1	8742	8742		119.56	48.179	1	839080			26158	5213	18083	18120	30055	30055		212			-0.010161451054500503
ILDEVIMGY	9	Oxidation (M)	_ILDEVIM(Oxidation (M))GY_		ILDEVIM(1)GY		ILDEVIM(71)GY	0	0	1		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7568359375	2	534.767726	1067.5209	-0.61146	-0.00032699	0.41309	0.00022091	-0.19837	-0.00010608	534.7678966112668	76.601	1.2332	76.433	75.666	76.899	-0.16854					70	29	4	0	0	0	0.023528	1	9070	9070		71.378	13.567	1	467350			26159	5213	18083	18120	30056	30056		212			-0.010161451054500503
ILDEVIMGY	9	Unmodified	_ILDEVIMGY_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2877807617188	2	526.770268	1051.52598	0.068389	3.6025E-05	-0.043965	-2.3159E-05	0.024424	1.2866E-05	526.7702490657219	82.637	1.0722	82.457	82.244	83.316	-0.18079					36	24	2	0	0	0	0.024443	1	9973	9973		35.201	9.6267	1	873060			26160	5213	18083	18121	30057	30057					0.00228158757181518
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2923583984375	2	492.292225	982.569897	-0.087286	-4.297E-05	0.7645	0.00037636	0.67721	0.00033339	492.2923627382076	79.359	0.91826	79.359	78.91	79.828	0					48	21	4	0	0	0	0.091713	2	9839	9839;9858		113.41	20.216	1	743750	+		26161	28503	18084	18122	30058;30059	30058					0.07791511245807214
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2924499511719	2	492.292225	982.569897	-0.97013	-0.00047759	1.5106	0.00074364	0.54043	0.00026605	492.29276590242995	79.52	0.87665	79.348	78.986	79.863	-0.17226					42	20	3	0	0	0	0.19099	2	9846	9834;9846		90.37	8.1293	1	821330	+		26162	28503	18084	18122	30060;30061	30061					0.07791511245807214
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2924499511719	2	492.292225	982.569897	-0.23058	-0.00011351	0.80629	0.00039693	0.57571	0.00028342	492.29241727976023	79.357	0.90733	79.375	79.028	79.936	0.018677					50	21	4	0	0	0	0.091713	2	9782	9763;9782		113.41	22.635	1	874370	+		26163	28503	18084	18122	30062;30063	30063					0.07791511245807214
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	492.292225	982.569897	-0.087286	-4.297E-05	0.7645	0.00037636	0.67721	0.00033339	492.2923627382076	79.359	0.91826	79.359	78.91	79.828	0	-0.05363	-0.00013426	NaN	113.41	48	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	743750	+		26164	28503	18084	18122							0.07791511245807214
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	492.292225	982.569897	-0.97013	-0.00047759	1.5106	0.00074364	0.54043	0.00026605	492.29276590242995	79.52	0.87665	79.348	78.986	79.863	-0.17226	-0.064241	0.00060031	NaN	113.41	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	821330	+		26165	28503	18084	18122							0.07791511245807214
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	492.292225	982.569897	-0.23058	-0.00011351	0.80629	0.00039693	0.57571	0.00028342	492.29241727976023	79.357	0.90733	79.375	79.028	79.936	0.018677	-0.036904	-9.3117E-05	NaN	113.41	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	874370	+		26166	28503	18084	18122							0.07791511245807214
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.292225	982.569897	0.051226	2.5218E-05	0.1083	5.3315E-05	0.15953	7.8533E-05	492.2920833063984	79.948	0.25018	79.702	79.53	79.78	-0.24651	0.28942	-0.00078035	NaN	113.41	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25353	+		26167	28503	18084	18122							0.07791511245807214
ILDGEPIKV	9	Unmodified	_ILDGEPIKV_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.292225	982.569897	0.29806	0.00014673	-1.7194	-0.00084645	-1.4213	-0.00069971	492.2913978720742	79.428	0.46192	79.278	78.984	79.446	-0.15051	-0.13465	-0.0025799	NaN	113.41	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33131	+		26168	28503	18084	18122							0.07791511245807214
ILDGNELSY	9	Unmodified	_ILDGNELSY_					0	0	0		nc|ENSG00000132640|Q9Y2F9-2|BTBD3;ENSG00000132640|ENST00000378226|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2566528320312	2	512.253297	1022.49204	-0.12497	-6.4016E-05	-0.58698	-0.00030068	-0.71195	-0.0003647	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.32811	2	5879	5879;5884		71.877	9.7701	1	54943000			26169	4631	18085	18123	30064;30065	30064					-0.01830546410246825
ILDGNELSY	9	Unmodified	_ILDGNELSY_					0	0	0		nc|ENSG00000132640|Q9Y2F9-2|BTBD3;ENSG00000132640|ENST00000378226|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2542724609375	2	512.253297	1022.49204	0.46489	0.00023814	-0.70196	-0.00035958	-0.23707	-0.00012144	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.45795	2	5855	5855;5867		62.107	7.2128	1	42815000			26170	4631	18085	18123	30066;30067	30066					-0.01830546410246825
ILDGNQLHI	9	Unmodified	_ILDGNQLHI_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.7843933105469	2	511.785099	1021.55564	0.70852	0.00036261	-1.2542	-0.0006419	-0.54571	-0.00027928	511.7844307240261	59.226	0.98899	59.226	58.999	59.988	0					74	26	4	0	0	0	0.082191	3	6746	6746;6758;6771		116.9	31.988	1	9217500			26171	855	18086	18124	30068;30069;30070	30068					0.04572858817527958
ILDGNQLHI	9	Unmodified	_ILDGNQLHI_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.7843933105469	2	511.785099	1021.55564	1.0333	0.00052883	-1.6145	-0.00082627	-0.58119	-0.00029744	511.78419840060843	59.5	1.0202	59.299	58.994	60.014	-0.20016					80	27	5	0	0	0	0.12602	3	6767	6745;6754;6767		104.75	19.387	1	8044400			26172	855	18086	18124	30071;30072;30073	30073					0.04572858817527958
ILDGNQLHI	9	Unmodified	_ILDGNQLHI_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.78424072265625	2	511.785099	1021.55564	0.021065	1.0781E-05	-0.75891	-0.0003884	-0.73784	-0.00037762	511.784628457217	59.103	0.98569	59.189	58.921	59.906	0.085682					83	26	5	0	0	0	0.11092	3	6646	6646;6657;6670		108.09	22.728	1	9392600			26173	855	18086	18124	30074;30075;30076	30074					0.04572858817527958
ILDIAGLDIPA	11	Unmodified	_ILDIAGLDIPA_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2-YLPM1|1|fusion	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7700805664062	2	555.823889	1109.63323	-0.52924	-0.00029416	-1.1091	-0.00061648	-1.6384	-0.00091065	555.823496626141	38.039	0.13265	37.859	37.775	37.908	-0.17929					7	3	3	0	0	0	0.024768	1	3091	3091		56.721	28.839	1	103570			26174	9892	18087	18125	30077	30077					0.08279451963062456
ILDIDVLPK	9	Unmodified	_ILDIDVLPK_					0	0	0			REV__nc|ENSG00000109686|Q5HYK7-3|SH3D19	REV__nc|ENSG00000109686|Q5HYK7-3|SH3D19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2943115234375	2	513.3157	1024.61685	-0.17067	-8.7609E-05	2.5071	0.001287	2.3365	0.0011993	513.3168851723912	53.96	0.61199	53.762	53.556	54.168	-0.19739					34	18	2	0	0	0	0.024541	1	5674	5674		10.866	0	1	754330	+		26175	21809	18088	18126	30078	30078					0.1055237079692688
ILDIEPQTLKI	11	Unmodified	_ILDIEPQTLKI_					0	0	0		nc|ENSG00000130830|Q00013-2|MPP1;nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000491955.5_1_X:154007454-154010087:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1	nc|ENSG00000130830|Q00013-2|MPP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8827514648438	2	641.884478	1281.7544	-0.57436	-0.00036868	-2.744	-0.0017613	-3.3184	-0.00213	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.018	1	11595	11595		32.812	3.6424	1	1351900			26176	4469	18089	18127	30079	30079					0.12479654605704127
ILDISEHTL	9	Unmodified	_ILDISEHTL_					0	0	0		ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3018188476562	2	520.784764	1039.55498	-0.75323	-0.00039227	0.97713	0.00050887	0.2239	0.0001166	520.7851589640824	60.874	0.78239	60.66	60.384	61.166	-0.21339					61	20	4	0	0	0	0.023181	1	7021	7021		82.305	10.428	1	3667900			26177	798	18090	18128	30080	30080					0.03678019377821329
ILDISEHTL	9	Unmodified	_ILDISEHTL_					0	0	0		ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7848510742188	2	520.784764	1039.55498	-0.68271	-0.00035555	-0.30628	-0.00015951	-0.98899	-0.00051505	520.785015857491	60.795	0.75818	60.618	60.322	61.08	-0.1761					53	18	4	0	0	0	0.072054	1	6782	6782		120.62	41.17	1	1135700			26178	798	18090	18128	30081	30081					0.03678019377821329
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3423461914062	2	536.342249	1070.66995	-0.79704	-0.00042748	0.27601	0.00014803	-0.52103	-0.00027945	536.3424200808095	27.157	2.2823	27.157	26.867	29.149	0					168	57	5	0	0	0	0.014738	7	1482	1433;1445;1457;1469;1482;1496;1515		163.15	62.666	1	27516000			26179	2049	18091	18129	30082;30083;30084;30085;30086;30087;30088	30086					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3428344726562	2	536.342249	1070.66995	-0.8677	-0.00046539	0.2013	0.00010797	-0.6664	-0.00035742	536.342389436748	27.097	2.364	27.084	26.786	29.15	-0.012983					160	59	5	0	0	0	0.01896	7	1467	1417;1429;1441;1455;1467;1480;1499		150.36	53.307	1	27281000			26180	2049	18091	18129	30089;30090;30091;30092;30093;30094;30095	30093					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3428344726562	2	536.342249	1070.66995	-1.6297	-0.00087409	1.1282	0.0006051	-0.50153	-0.00026899	536.3428700072426	26.966	2.0692	27.047	26.758	28.827	0.081293					145	52	6	0	0	0	0.015752	7	1416	1358;1366;1378;1391;1404;1416;1430		158.07	55.44	1	28668000			26181	2049	18091	18129	30096;30097;30098;30099;30100;30101;30102	30101					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3421020507812	2	536.342249	1070.66995	-0.63459	-0.00034036	-0.04122	-2.2108E-05	-0.67581	-0.00036246	536.342231989748	27.256	1.3382	27.014	26.786	28.125	-0.24217					92	31	5	0	0	0	0.015752	4	1474	1474;1486;1498;1510		158.07	38.687	1	12859000			26182	2049	18091	18129	30103;30104;30105;30106	30103					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.3418579101562	2	536.342249	1070.66995	-0.81404	-0.00043661	0.12947	6.944E-05	-0.68457	-0.00036717	536.3423203997432	27.079	1.3295	26.911	26.638	27.967	-0.16816					84	31	5	0	0	0	0.013719	5	1467	1443;1455;1467;1479;1495		168.26	42.444	1	10962000			26183	2049	18091	18129	30107;30108;30109;30110;30111	30109					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3417358398438	2	536.342249	1070.66995	-0.8512	-0.00045653	0.14173	7.6013E-05	-0.70947	-0.00038052	536.3422827394164	27.321	1.3081	27.164	26.93	28.238	-0.15664					93	31	5	0	0	0	0.015752	5	1456	1456;1467;1479;1492;1506		158.07	58.7	1	11057000			26184	2049	18091	18129	30112;30113;30114;30115;30116	30112					0.1374374857962266
ILDKSRES	8	Unmodified	_ILDKSRES_					0	0	0			REV__nc|ENSG00000185532|Q13976|PRKG1	REV__nc|ENSG00000185532|Q13976|PRKG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2845458984375	2	474.261456	946.50836	0.47676	0.00022611	4.2003	0.001992	4.6771	0.0022181	474.2632362637625	50.63	0.51902	50.518	50.267	50.786	-0.11163					21	13	2	0	0	0	0.027866	1	5179	5179		27.882	7.8855	1	337590	+		26185	37015	18092	18130	30117	30117					0.032965795465202063
ILDLCAAPGGK	11	Unmodified	_ILDLCAAPGGK_					0	0	0		ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2897338867188	2	529.289159	1056.56377	0.040642	2.1511E-05	-3.3099	-0.0017519	-3.2692	-0.0017304	529.2872345677699	57.633	0.7239	57.458	56.999	57.723	-0.1749					43	13	5	0	0	0	0.6032	1	6455	6455		69.628	3.1983	1	2836300			26186	10777	18093	18131	30118	30118					0.037746697426428
ILDLCAAPGGK	11	Unmodified	_ILDLCAAPGGK_					0	0	0		ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.289159	1056.56377	-0.60127	-0.00031824	-3.0239	-0.0016005	-3.6251	-0.0019187	529.2874738205522	57.691	0.45938	57.457	57.164	57.624	-0.23363	0.019628	-0.00018199	NaN	69.628	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219950			26187	10777	18093	18131							0.037746697426428
ILDLHSNLY	9	Unmodified	_ILDLHSNLY_					0	0	0			REV__nc|ENSG00000172456|Q96C11-4|FGGY	REV__nc|ENSG00000172456|Q96C11-4|FGGY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2676391601562	2	544.292756	1086.57096	-0.3439	-0.00018718	2.8544	0.0015536	2.5105	0.0013664	544.292371301399	35.883	0.13574	35.666	35.544	35.68	-0.21661					6	3	2	0	0	0	0.024263	1	2758	2758		42.396	0	1	164270	+		26188	26671	18094	18132	30119	30119					0.031137256147076187
ILDLLSTGGGL	11	Unmodified	_ILDLLSTGGGL_					0	0	0			REV__nc|ENSG00000138036|Q8TCX1-5|DYNC2LI1	REV__nc|ENSG00000138036|Q8TCX1-5|DYNC2LI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2760620117188	2	529.808239	1057.60193	-0.42852	-0.00022703	1.3118	0.00069503	0.88332	0.00046799	529.808633202114	49.531	0.5912	49.379	49.043	49.634	-0.1512					45	15	4	0	0	0	0.024759	1	5062	5062		26.693	0	1	1548300	+		26189	23809	18095	18133	30120	30120					0.07542878928961727
ILDLNRPDL	9	Unmodified	_ILDLNRPDL_					0	0	0			REV__SLC44A1|p.C98R|1|0.09|ENSG00000070214|chr9:105335585-105335585|T/C|missense_variant	REV__SLC44A1|p.C98R|1|0.09|ENSG00000070214|chr9:105335585-105335585|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.76416015625	2	534.806031	1067.59751	-0.85156	-0.00045542	0.27575	0.00014747	-0.57581	-0.00030795	534.8059207487302	49.096	0.49931	48.995	48.726	49.226	-0.1008					24	12	3	0	0	0	0.024374	1	4928	4928		49.442	11.63	1	432990	+		26190	37506	18096	18134	30121	30121					0.06641414506043475
ILDLVCKRCF	10	Unmodified	_ILDLVCKRCF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	605.8560180664062	2	605.327762	1208.64097	-1.4343	-0.00086823	-2.6568	-0.0016083	-4.0912	-0.0024765	605.3253621740562	82.076	0.65831	82.076	81.791	82.449	0					18	15	2	0	0	0	0.03519	1	10218	10218		68.787	29.534	1	64235			26191	4822	18097	18135	30122	30122					0.04499564687307611
ILDLVHSALG	10	Unmodified	_ILDLVHSALG_					0	0	0		GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant;ENSG00000182771|ENST00000327946|GRID1	GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant	GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7643432617188	2	519.303124	1036.5917	-0.50134	-0.00026035	0.54137	0.00028113	0.040029	2.0787E-05	519.3033616678568	84.318	0.67422	84.318	83.954	84.628	0					36	15	3	0	0	0	0.03519	1	10506	10506		35.618	0	1	709760			26192	9162	18098	18136	30123	30123					0.07486315994378856
ILDMENTSL	9	Unmodified	_ILDMENTSL_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2567749023438	2	518.254982	1034.49541	-0.8297	-0.00043	4.1101	0.0021301	3.2804	0.0017001	518.257083049947	24.2	1.1803	24.2	23.694	24.874	0					64	26	5	0	0	0	0.10174	1	1038	1038		110.12	8.66	1	2498200			26193	9475	18099	18137	30124	30124					-0.0204561962787011
ILDNVNCVIN	10	Unmodified	_ILDNVNCVIN_					0	0	0		ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	ENST00000533372.1_1_12:49976813-49999059:-|nuORF	ENST00000533372.1_1_12:49976813-49999059:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.834228515625	2	558.789524	1115.56449	-0.45789	-0.00025586	1.2528	0.00070003	0.79488	0.00044417	558.7899398945381	64.248	0.55207	63.992	63.755	64.307	-0.25563					22	13	2	0	0	0	0.03519	1	7284	7284		27.882	0	1	286750			26194	4893	18100	18138	30125	30125					0.011334643916825371
ILDPEDPGAP	10	Unmodified	_ILDPEDPGAP_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2537841796875	2	512.253297	1022.49204	-0.47089	-0.00024122	0.7964	0.00040796	0.32551	0.00016674	512.253782438945	54.125	2.449	54.125	53.655	56.104	0					199	69	5	0	0	0	0.79525	1	5942	5942		60.972	10.947	1	29802000			26195	10959	18101	18139	30126	30126					-0.018305464102354563
ILDPEDPGAP	10	Unmodified	_ILDPEDPGAP_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.25390625	2	512.253297	1022.49204	-0.047938	-2.4556E-05	0.34539	0.00017693	0.29745	0.00015237	512.253584548123	54.26	2.8382	54.113	53.566	56.404	-0.14723					223	79	5	0	0	0	0.47726	2	5918	5918;5930		90.777	21.99	1	25579000			26196	10959	18101	18139	30127;30128	30127					-0.018305464102354563
ILDPEDPGAP	10	Unmodified	_ILDPEDPGAP_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2535400390625	2	512.253297	1022.49204	0.0020289	1.0393E-06	0.28449	0.00014573	0.28652	0.00014677	512.2535245500372	53.952	2.95	54.05	53.631	56.581	0.098015					227	82	5	0	0	0	0.50466	1	5844	5844		87.754	19.27	1	29194000			26197	10959	18101	18139	30129	30129					-0.018305464102354563
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.818603515625	2	509.81841	1017.62227	0.14516	7.4004E-05	-0.2681	-0.00013668	-0.12295	-6.2681E-05	509.81814647496833	74.804	1.4945	74.804	74.424	75.918	0					80	38	5	0	0	0	0.10076	2	9175	9163;9175		110.34	9.1257	1	4681000			26198	2909	18102	18140	30130;30131	30131					0.11416094379421793
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.818359375	2	509.81841	1017.62227	-0.074488	-3.7976E-05	-0.19963	-0.00010178	-0.27412	-0.00013975	509.8181687725682	75.061	1.4837	74.802	74.451	75.934	-0.25887					70	38	4	0	0	0	0.062871	2	9161	9161;9187		123.99	35.346	1	4516300			26199	2909	18102	18140	30132;30133	30132					0.11416094379421793
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8183898925781	2	509.81841	1017.62227	-0.37523	-0.0001913	0.13959	7.1167E-05	-0.23564	-0.00012013	509.81832895541544	74.839	1.3009	74.849	74.523	75.824	0.010376					68	33	4	0	0	0	0.033883	2	9117	9104;9117		138.48	38.08	1	4218300			26200	2909	18102	18140	30134;30135	30135					0.11416094379421793
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	509.81841	1017.62227	0.17219	8.7784E-05	0.70054	0.00035715	0.87272	0.00044493	509.81825701954796	75.027	0.95103	74.751	74.352	75.303	-0.27573	-0.014255	0.00077584	NaN	138.48	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	983230			26201	2909	18102	18140							0.11416094379421793
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.81841	1017.62227	-0.22889	-0.00011669	1.0311	0.00052569	0.80224	0.000409	509.81849633062063	74.977	0.91769	74.714	74.318	75.235	-0.26326	-0.05136	0.0011129	NaN	138.48	47	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1091700			26202	2909	18102	18140							0.11416094379421793
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.81841	1017.62227	0.308	0.00015702	0.11431	5.8276E-05	0.42231	0.0002153	509.8181877935532	74.853	0.7952	74.671	74.351	75.146	-0.18279	-0.09462	0.0001781	NaN	138.48	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955590			26203	2909	18102	18140							0.11416094379421793
ILDPREID	8	Unmodified	_ILDPREID_					0	0	0			REV__nc|ENSG00000099204|O14639-2|ABLIM1	REV__nc|ENSG00000099204|O14639-2|ABLIM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7646484375	2	485.763832	969.513111	0.12569	6.1055E-05	0.37065	0.00018005	0.49634	0.0002411	485.764199663561	99.145	0.8424	99.145	98.779	99.621	0					33	18	3	0	0	0	0.5947	1	12678	12678		76.774	7.9873	1	125810	+		26204	20995	18103	18141	30136	30136					0.027134636892810704
ILDPREID	8	Unmodified	_ILDPREID_					0	0	0			REV__nc|ENSG00000099204|O14639-2|ABLIM1	REV__nc|ENSG00000099204|O14639-2|ABLIM1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	485.763832	969.513111	0.12569	6.1055E-05	0.37065	0.00018005	0.49634	0.0002411	485.764199663561	99.145	0.8424	99.145	98.779	99.621	0	-0.032734	-1.2299E-05	NaN	76.774	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125810	+		26205	20995	18103	18141							0.027134636892810704
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3059692382812	2	536.305864	1070.59717	-0.87287	-0.00046813	-1.1207	-0.00060104	-1.9936	-0.0010692	536.305759422177	47.86	4.2051	47.86	47.395	51.6	0					353	121	7	0	0	0	0.013719	18	4909	4803;4813;4825;4837;4849;4861;4873;4885;4897;4909;4921;4935;4946;4960;4972;4984;4996;5006		223.88	51.866	1	464020000			26206	3487	18104	18142	30137;30138;30139;30140;30141;30142;30143;30144;30145;30146;30147;30148;30149;30150;30151;30152;30153;30154	30146					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3051147460938	2	536.305864	1070.59717	-1.0327	-0.00055382	-0.9925	-0.00053228	-2.0251	-0.0010861	536.3058040918716	48.027	4.2674	47.874	47.336	51.604	-0.15301					339	122	6	0	0	0	0.013337	19	4837	4805;4814;4825;4837;4849;4861;4873;4885;4897;4909;4922;4934;4946;4960;4972;4984;4997;5007;5020		195.05	58.778	1	461430000			26207	3487	18104	18142	30155;30156;30157;30158;30159;30160;30161;30162;30163;30164;30165;30166;30167;30168;30169;30170;30171;30172;30173	30158					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3060913085938	2	536.305864	1070.59717	-1.3076	-0.00070125	-0.48889	-0.00026219	-1.7964	-0.00096344	536.3060592593196	47.756	4.267	47.815	47.282	51.55	0.059097					296	121	6	0	0	0	0.013719	18	4723	4723;4732;4744;4756;4768;4780;4792;4804;4816;4828;4840;4853;4865;4878;4890;4901;4912;4926		223.88	66.549	1	488990000			26208	3487	18104	18142	30174;30175;30176;30177;30178;30179;30180;30181;30182;30183;30184;30185;30186;30187;30188;30189;30190;30191	30174					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3057861328125	2	536.305864	1070.59717	-0.65561	-0.00035161	-0.21839	-0.00011713	-0.874	-0.00046873	536.3056596272118	47.897	1.1724	47.8	47.485	48.658	-0.097553					110	31	5	0	0	0	0.012962	6	4698	4698;4708;4720;4732;4746;4760		209.19	46.942	1	29117000			26209	3487	18104	18142	30192;30193;30194;30195;30196;30197	30192					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.3055419921875	2	536.305864	1070.59717	-1.1338	-0.00060807	0.15598	8.365E-05	-0.97783	-0.00052442	536.3058870080648	48.206	1.6889	47.93	47.595	49.284	-0.27598					125	45	5	0	0	0	0.013946	6	4727	4727;4737;4749;4761;4774;4788		223.88	66.549	1	29195000			26210	3487	18104	18142	30198;30199;30200;30201;30202;30203	30198					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.304931640625	2	536.305864	1070.59717	-0.35301	-0.00018932	-0.70855	-0.00038	-1.0616	-0.00056932	536.305428430011	47.996	1.1714	47.809	47.526	48.698	-0.18684					112	31	5	0	0	0	0.0089529	6	4737	4702;4714;4725;4737;4751;4765		239.13	67.595	1	29939000			26211	3487	18104	18142	30204;30205;30206;30207;30208;30209	30207					0.06469994786175448
ILDQTNVSA	9	Unmodified	_ILDQTNVSA_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.75335693359375	2	480.753464	959.492375	-0.081127	-3.9002E-05	-0.56968	-0.00027387	-0.6508	-0.00031288	480.7530555825355	47.992	0.83722	47.992	47.748	48.585	0					54	24	3	0	0	0	0.047345	2	4870	4858;4870		129.68	8.0346	1	3615500			26212	6327	18105	18143	30210;30211	30211					0.011008733096105061
ILDQTNVSA	9	Unmodified	_ILDQTNVSA_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7532958984375	2	480.753464	959.492375	-0.48405	-0.00023271	-0.1805	-8.6776E-05	-0.66455	-0.00031949	480.7532609421303	48.162	0.99696	48.009	47.795	48.792	-0.15301					63	28	3	0	0	0	0.057894	1	4870	4870		125.81	29.624	1	3946200			26213	6327	18105	18143	30212	30212					0.011008733096105061
ILDQTNVSA	9	Unmodified	_ILDQTNVSA_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.75390625	2	480.753464	959.492375	-0.65184	-0.00031337	-0.01808	-8.6919E-06	-0.66992	-0.00032206	480.75333649498464	47.893	0.9066	47.96	47.716	48.622	0.066799					55	25	4	0	0	0	0.32811	1	4794	4794		71.877	0.58177	1	3402000			26214	6327	18105	18143	30213	30213					0.011008733096105061
ILDRLTTKV	9	Unmodified	_ILDRLTTKV_					0	0	0		ENSG00000099940|ENST00000215730|SNAP29	ENSG00000099940|ENST00000215730|SNAP29	ENSG00000099940|ENST00000215730|SNAP29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7607421875	2	529.832049	1057.64954	-0.37361	-0.00019795	0.10481	5.5534E-05	-0.26879	-0.00014241	529.8321241334903	45.284	0.40601	45.073	44.91	45.316	-0.21109					18	11	2	0	0	0	0.024506	1	4260	4260		16.473	0	1	235510			26215	2099	18106	18144	30214	30214					0.12302577919786017
ILDRVIGFHIL	11	Unmodified	_ILDRVIGFHIL_					0	0	0		ENST00000518740.5_2_3:126326756-126328052:-|nuORF	ENST00000518740.5_2_3:126326756-126328052:-|nuORF	ENST00000518740.5_2_3:126326756-126328052:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.597412109375	3	432.599324	1294.77614	0.53289	0.00023053	-4.2687	-0.0018466	-3.7358	-0.0016161	432.59730734053363	105.36	0.92603	105.36	104.92	105.85	0					63	26	4	0	0	0	1.0483	1	13530	13530		28.577	0	1	1981300			26216	15933	18107	18145	30215	30215					0.14054504144951352
ILDRVIGFHIL	11	Unmodified	_ILDRVIGFHIL_					0	0	0		ENST00000518740.5_2_3:126326756-126328052:-|nuORF	ENST00000518740.5_2_3:126326756-126328052:-|nuORF	ENST00000518740.5_2_3:126326756-126328052:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.5976257324219	3	432.599324	1294.77614	0.3206	0.00013869	-4.0233	-0.0017405	-3.7027	-0.0016018	432.5974556080167	105.47	1.1984	105.34	104.83	106.03	-0.12444					83	37	4	0	0	0	1.0399	1	13133	13133		30.569	3.8192	1	2220000			26217	15933	18107	18145	30216	30216					0.14054504144951352
ILDSLGRLV	9	Unmodified	_ILDSLGRLV_					0	0	0		ENST00000480758.1_1_1:92498118-92508548:+|nuORF	ENST00000480758.1_1_1:92498118-92508548:+|nuORF	ENST00000480758.1_1_1:92498118-92508548:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.3056640625	2	493.305667	984.596781	1.0832	0.00053433	-1.5571	-0.00076813	-0.47394	-0.0002338	493.3048559255982	59.163	0.92426	59.163	58.787	59.711	0					76	24	4	0	0	0	0.72875	1	6740	6740		44.117	3.3386	1	8577700			26218	15210	18108	18146	30217	30217					0.10386619857013102
ILDSLGRLV	9	Unmodified	_ILDSLGRLV_					0	0	0		ENST00000480758.1_1_1:92498118-92508548:+|nuORF	ENST00000480758.1_1_1:92498118-92508548:+|nuORF	ENST00000480758.1_1_1:92498118-92508548:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.30645751953125	2	493.305667	984.596781	1.4181	0.00069955	-1.9008	-0.00093769	-0.48274	-0.00023814	493.30472465707845	59.354	0.87406	59.154	58.853	59.727	-0.20016					69	23	4	0	0	0	0.50848	1	6728	6728		58.782	11.125	1	9720000			26219	15210	18108	18146	30218	30218					0.10386619857013102
ILDTGEIID	9	Unmodified	_ILDTGEIID_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;AK5|p.M336I|1|0.19|ENSG00000154027|chr1:77417664-77417664|G/A|missense_variant;ENST00000465146.5_1_1:77806124-77883412:+|nuORF	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7513427734375	2	494.763497	987.512442	-0.64268	-0.00031797	2.4763	0.0012252	1.8336	0.0009072	494.7642830976195	45.518	0.50719	45.308	45.154	45.662	-0.20938					16	14	2	0	0	0	0.024294	1	4366	4366		45.952	0	1	131650			26220	6377	18109	18147	30219	30219					0.01818624249574441
ILDTKIPSL	9	Unmodified	_ILDTKIPSL_					0	0	0			REV__ENST00000240304.5_1_17:48827951-48829591:+|nuORF	REV__ENST00000240304.5_1_17:48827951-48829591:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2869873046875	2	500.307875	998.601197	0.22665	0.00011339	-0.89442	-0.00044749	-0.66777	-0.00033409	500.3072194399574	89.636	0.95369	89.649	89.089	90.043	0.013435					40	22	3	0	0	0	0.024292	1	11227	11227		58.782	3.2778	1	504290	+		26221	29447	18110	18148	30220	30220					0.10184084279910621
ILDVISCIL	9	Carbamidomethyl (C)	_ILDVISC(Carbamidomethyl (C))IL_	ILDVISC(1)IL		ILDVISC(56)IL		0	1	0		ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.301736	1044.58892	0.47324	0.00024765	2.705	0.0014155	3.1782	0.0016632	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.55828	1	10684	10684		55.504	7.5886	1	13836000			26222	9440	18111	18149	30221	30221	122				0.06840724545190824
ILDVMTGDYT	10	Unmodified	_ILDVMTGDYT_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.26806640625	2	564.26809	1126.52163	-0.14722	-8.3073E-05	0.087198	4.9203E-05	-0.060024	-3.387E-05	564.2679779151267	59.883	0.76671	59.635	59.252	60.019	-0.24842					46	19	4	0	0	0	1.0271	1	6626	6626		42.396	3.59	1	1530400	+		26223	24554	18112	18150	30222	30222					-0.03657350456410313
ILDVQKFLN	9	Unmodified	_ILDVQKFLN_					0	0	0			REV__ENSG00000125484|ENST00000372146|GTF3C4	REV__ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.316162109375	2	545.318774	1088.623	-0.44893	-0.00024481	-2.4518	-0.001337	-2.9008	-0.0015818	545.3175087487701	100.29	0.33849	100.29	100.14	100.47	-0.0050812					11	7	2	0	0	0	0.35646	1	12756	12756		68.787	2.3575	1	140900	+		26224	22823	18113	18151	30223	30223					0.08222889028479585
ILDVSANPL	9	Unmodified	_ILDVSANPL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2688903808594	2	471.26875	940.522947	0.3322	0.00015656	-0.22342	-0.00010529	0.10879	5.1268E-05	471.2685481476497	66.94	1.181	66.964	66.643	67.824	0.023911					89	28	5	0	0	0	0.20967	1	7877	7877		87.754	13.499	1	7533000			26225	10763	18114	18152	30224	30224					0.05030651694653443
ILDWKSGRM	9	Unmodified	_ILDWKSGRM_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3270874023438	2	553.294776	1104.575	0.75519	0.00041784	1.8888	0.0010451	2.644	0.0014629	553.2941657370735	54.69	0.59352	54.484	54.237	54.831	-0.20613					20	15	2	0	0	0	0.024427	1	5772	5772		42.396	9.5837	1	215690	+		26226	25290	18115	18153	30225	30225					0.02689491836781599
ILEALQVKT	9	Unmodified	_ILEALQVKT_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8283996582031	2	507.813325	1013.6121	0.0082287	4.1787E-06	-0.0053907	-2.7375E-06	0.0028381	1.4412E-06	507.8132050874213	67.63	0.70213	67.63	67.245	67.947	0					32	17	3	0	0	0	0.024418	1	8066	8066		37.812	6.2817	1	394110	+		26227	26587	18116	18154	30226	30226					0.10583486654184071
ILEDNLLTL	9	Unmodified	_ILEDNLLTL_					0	0	0		ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.30322265625	2	522.30279	1042.59103	-0.55657	-0.0002907	0.41266	0.00021553	-0.14391	-7.5165E-05	522.3029547247461	82.612	0.89951	82.637	82.273	83.172	0.025719					76	20	6	0	0	0	0.021872	1	10235	10235		148.04	14.23	1	3185400			26228	13062	18117	18155	30227	30227					0.0714347655466554
ILEDNLLTL	9	Unmodified	_ILEDNLLTL_					0	0	0		ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.30279	1042.59103	0.31139	0.00016264	-0.26638	-0.00013913	0.045004	2.3506E-05	522.3025062139369	82.68	0.47832	82.459	82.26	82.738	-0.22015	-0.12577	-6.7761E-05	NaN	148.04	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237580			26229	13062	18117	18155							0.0714347655466554
ILEDNLLTL	9	Unmodified	_ILEDNLLTL_					0	0	0		ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.30279	1042.59103	0.40685	0.0002125	-0.60749	-0.00031729	-0.20064	-0.00010479	522.3023467420628	82.736	0.56355	82.555	82.244	82.807	-0.18079	-0.030043	-0.00042408	NaN	148.04	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225390			26230	13062	18117	18155							0.0714347655466554
ILEDNLLTL	9	Unmodified	_ILEDNLLTL_					0	0	0		ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.30279	1042.59103	-0.39601	-0.00020684	0.43514	0.00022728	0.039132	2.0439E-05	522.302869365161	82.655	0.6064	82.515	82.216	82.823	-0.14014	-0.069856	0.00066506	NaN	148.04	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249650			26231	13062	18117	18155							0.0714347655466554
ILEEVLEAL	9	Unmodified	_ILEEVLEAL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7966918945312	2	514.79734	1027.58013	-1.1087	-0.00057077	1.4883	0.00076616	0.37955	0.00019539	514.7978432422714	91.711	0.9073	91.711	91.425	92.333	0					54	21	4	0	0	0	0.31247	1	11621	11621		73.975	5.1879	1	625000			26232	5364	18118	18156	30228	30228					0.06744074180369353
ILEGGQKVVF	10	Unmodified	_ILEGGQKVVF_					0	0	0		ENSG00000116199|ENST00000263733|FAM20B	ENSG00000116199|ENST00000263733|FAM20B	ENSG00000116199|ENST00000263733|FAM20B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.31640625	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0271	1	10602	10602		42.396	3.1433	1	5204600			26233	3533	18119	18157	30229	30229					0.08222889028479585
ILEGKLQLP	9	Unmodified	_ILEGKLQLP_					0	0	0		nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.245849609375	2	505.815867	1009.61718	-0.4327	-0.00021886	1.9881	0.0010056	1.5554	0.00078676	505.8168888928904	56.272	0.59342	56.115	55.82	56.413	-0.15655					23	13	2	0	0	0	0.024319	1	6128	6128		56.721	1.9447	1	309790			26234	18114	18120	18158	30230	30230					0.11275790516799589
ILEHVEQPN	9	Unmodified	_ILEHVEQPN_					0	0	0			REV__nc|ENSG00000079337|O95398-3|RAPGEF3	REV__nc|ENSG00000079337|O95398-3|RAPGEF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7923583984375	2	539.780013	1077.54547	-0.68163	-0.00036793	-3.8565	-0.0020817	-4.5381	-0.0024496	539.7783342050403	78.433	0.20813	78.433	78.323	78.531	0					6	4	2	0	0	0	0.024541	1	9716	9716		11.511	0	1	60338	+		26235	20635	18121	18159	30231	30231					0.009802510922781948
ILEIKKQLF	9	Unmodified	_ILEIKKQLF_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.3131103515625	2	566.360442	1130.70633	-0.19323	-0.00010944	0.058546	3.3158E-05	-0.13468	-7.6278E-05	566.3604377743047	89.328	0.7175	89.201	88.955	89.673	-0.12774					41	16	3	0	0	0	0.023635	1	10966	10966		56.721	3.7844	1	266250			26236	13153	18122	18160	30232	30232					0.1462062547630012
ILEKALQVV	9	Unmodified	_ILEKALQVV_					0	0	0			REV__ENSG00000088451|ENST00000261296|TGDS	REV__ENSG00000088451|ENST00000261296|TGDS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.8233337402344	2	506.823692	1011.63283	-0.22357	-0.00011331	0.40933	0.00020746	0.18576	9.4148E-05	506.82376476733606	60.476	0.99355	60.27	59.975	60.968	-0.20599					52	24	4	0	0	0	0.15366	1	6722	6722		98.629	10.875	1	2144500	+		26237	20816	18123	18161	30233	30233					0.1274807703384795
ILEKINSH	8	Unmodified	_ILEKINSH_					0	0	0		nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1	nc|ENSG00000177192|Q9Y606-2|PUS1	nc|ENSG00000177192|Q9Y606-2|PUS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7901916503906	2	477.274367	952.53418	0.81817	0.00039049	-1.0512	-0.00050169	-0.23298	-0.00011119	477.27355553421245	53.554	0.36025	53.554	53.474	53.835	0					12	9	2	0	0	0	0.027866	1	5789	5789		35.618	5.1146	1	185310			26238	8720	18124	18162	30234	30234					0.05601473788806288
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.349853515625	2	543.350074	1084.6856	-0.51897	-0.00028198	0.21114	0.00011472	-0.30783	-0.00016726	543.350091036441	25.649	0.59089	25.729	25.459	26.049	0.08009					37	13	4	0	0	0	0.2101	1	1190	1190		87.696	13.441	1	663840			26239	1697	18125	18163	30235	30235					0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.350074	1084.6856	-1.2063	-0.00065546	1.0893	0.00059185	-0.11706	-6.3607E-05	543.3505661043035	25.672	0.63893	25.672	25.445	26.083	0	0.0078913	0.0004432	NaN	87.696	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647780			26240	1697	18125	18163							0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	543.350074	1084.6856	-1.264	-0.00068679	1.038	0.00056401	-0.22597	-0.00012278	543.3505035540428	25.778	0.63754	25.744	25.515	26.152	-0.034258	0.079455	0.00038752	NaN	87.696	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604770			26241	1697	18125	18163							0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.350074	1084.6856	-0.95509	-0.00051895	1.5482	0.00084122	0.59311	0.00032227	543.350287547014	25.955	0.40761	25.719	25.508	25.916	-0.23603	0.055053	0.00094193	NaN	87.696	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196050			26242	1697	18125	18163							0.14664035096643602
ILEKKVEKV	9	Unmodified	_ILEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.350074	1084.6856	-0.42808	-0.0002326	1.7678	0.00096054	1.3397	0.00072794	543.3499741327462	25.629	0.41276	25.458	25.247	25.659	-0.17078	-0.20664	0.0011806	NaN	87.696	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199720			26243	1697	18125	18163							0.14664035096643602
ILEKMTIKL	9	Unmodified	_ILEKMTIKL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3244018554688	2	544.841028	1087.6675	-0.58191	-0.00031705	-3.2531	-0.0017724	-3.835	-0.0020895	544.8393810691746	68.261	0.65346	68.261	67.987	68.641	0					31	16	3	0	0	0	0.024313	1	8191	8191		69.628	10.846	1	881040	+		26244	22245	18126	18164	30236	30236					0.12717576850309342
ILEPAQWIS	9	Unmodified	_ILEPAQWIS_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.79052734375	2	528.78985	1055.56515	0.0069581	3.6794E-06	0.8966	0.00047411	0.90356	0.00047779	528.7902932408939	104.52	0.86827	104.39	104.1	104.97	-0.1256					50	24	3	0	0	0	0.55828	1	13027	13027		55.504	4.1688	1	991500			26245	4439	18127	18165	30237	30237					0.03958627103043
ILEPVLLLL	9	Unmodified	_ILEPVLLLL_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.83392333984375	2	511.846636	1021.67872	0.1049	5.3691E-05	3.2147	0.0016454	3.3196	0.0016991	511.8490511159761	73.186	0.24888	72.915	72.76	73.009	-0.27126					8	5	2	0	0	0	0.024412	1	8893	8893		31.955	6.5047	1	25423			26246	5546	18128	18166	30238	30238					0.1687472221610733
ILEQAGRLL	9	Unmodified	_ILEQAGRLL_					0	0	0			REV__ENSG00000105376|ENST00000221980|ICAM5	REV__ENSG00000105376|ENST00000221980|ICAM5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.810302734375	2	506.811116	1011.60768	-0.25593	-0.00012971	0.16682	8.4548E-05	-0.089102	-4.5158E-05	506.8110374060778	64.302	1.0749	64.074	63.74	64.815	-0.22774					54	26	4	0	0	0	0.11092	1	7311	7311		108.09	8.7125	1	2217500	+		26247	21520	18129	18167	30239	30239					0.10234022231293238
ILEQQCVGLA	10	Unmodified	_ILEQQCVGLA_					0	0	0		ENSG00000271383|ENST00000651566|NBPF19	ENSG00000271383|ENST00000651566|NBPF19	ENSG00000271383|ENST00000651566|NBPF19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.2846069335938	2	537.286617	1072.55868	-0.037502	-2.0149E-05	-2.247	-0.0012073	-2.2845	-0.0012274	537.28525843834	51.031	0.56166	50.755	50.516	51.078	-0.27643					31	14	3	0	0	0	0.82838	1	5221	5221		58.782	4.0056	1	1810800			26248	11007	18130	18168	30240	30240					0.02530365880033969
ILESRYPVI	9	Unmodified	_ILESRYPVI_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3162841796875	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.50848	1	10794	10794		58.782	2.0609	1	3635800			26249	8838	18131	18169	30241	30241					0.08222889028479585
ILETMVMDQC	10	2 Oxidation (M)	_ILETM(Oxidation (M))VM(Oxidation (M))DQC_		ILETM(1)VM(1)DQC		ILETM(110)VM(110)DQC	0	0	2			REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.7566528320312	2	607.758717	1213.50288	-2.2089	-0.0013425	-0.90874	-0.0005523	-3.1177	-0.0018948	607.7581251160155	52.224	0.85125	51.955	51.62	52.471	-0.26903					78	22	6	0	0	0	0.28861	3	5398	5386;5398;5411		110.12	25.204	1	4222300	+		26250	22678	18132	18170	30242;30243;30244	30243		672;673			-0.09532971414091662
ILETMVMDQC	10	2 Oxidation (M)	_ILETM(Oxidation (M))VM(Oxidation (M))DQC_		ILETM(1)VM(1)DQC		ILETM(110)VM(110)DQC	0	0	2			REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.7567138671875	2	607.758717	1213.50288	-0.14947	-9.0843E-05	-2.7031	-0.0016429	-2.8526	-0.0017337	607.7568499251398	52.076	0.79686	51.892	51.598	52.395	-0.18404					65	20	5	0	0	0	0.28861	3	5388	5375;5388;5399		110.12	41.333	1	4052800	+		26251	22678	18132	18170	30245;30246;30247	30246		672;673			-0.09532971414091662
ILETMVMDQC	10	2 Oxidation (M)	_ILETM(Oxidation (M))VM(Oxidation (M))DQC_					0	0	2			REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	607.758717	1213.50288	-2.2089	-0.0013425	-0.90874	-0.0005523	-3.1177	-0.0018948	607.7581251160155	52.224	0.85125	51.955	51.62	52.471	-0.26903	0.068724	0.0012702	NaN	110.12	78	22	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4222300	+		26252	22678	18132	18170				672;673			-0.09532971414091662
ILETMVMDQC	10	2 Oxidation (M)	_ILETM(Oxidation (M))VM(Oxidation (M))DQC_					0	0	2			REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	607.758717	1213.50288	-0.14947	-9.0843E-05	-2.7031	-0.0016429	-2.8526	-0.0017337	607.7568499251398	52.076	0.79686	51.892	51.598	52.395	-0.18404	0.006109	-0.00091096	NaN	110.12	65	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4052800	+		26253	22678	18132	18170				672;673			-0.09532971414091662
ILEWGDPPAK	10	Unmodified	_ILEWGDPPAK_					0	0	0			REV__ENST00000473447.1_1_7:99008715-99008814:+|nuORF	REV__ENST00000473447.1_1_7:99008715-99008814:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.769287109375	2	563.300581	1124.58661	-0.13589	-7.6549E-05	2.153	0.0012128	2.0171	0.0011362	563.301588278688	63.334	0.51543	63.15	62.873	63.388	-0.18386					21	12	2	0	0	0	0.03519	1	7117	7117		26.693	4.1133	1	318350	+		26254	21601	18133	18171	30248	30248					0.029300121317419325
ILFCALWSA	9	Unmodified	_ILFCALWSA_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.271240234375	2	512.270238	1022.52592	-1.3044	-0.00066821	2.584	0.0013237	1.2796	0.00065549	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.88411	1	13299	13299		33.516	3.0119	1	5095800			26255	7128	18134	18172	30249	30249					0.015562035478069447
ILFCALWSA	9	Unmodified	_ILFCALWSA_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2713012695312	2	512.270238	1022.52592	0.37647	0.00019285	1.4622	0.00074902	1.8386	0.00094187	512.2706228982657	104.7	1.3087	104.53	104.2	105.51	-0.16484					84	41	3	0	0	0	0.97516	1	13035	13035		25.45	0	1	273330			26256	7128	18134	18172	30250	30250					0.015562035478069447
ILFCMAALI	9	Carbamidomethyl (C)	_ILFC(Carbamidomethyl (C))MAALI_	ILFC(1)MAALI		ILFC(86)MAALI		0	1	0		ENSG00000185716|ENST00000542527|MOSMO	ENSG00000185716|ENST00000542527|MOSMO	ENSG00000185716|ENST00000542527|MOSMO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2865600585938	2	526.287574	1050.56059	-1.4904	-0.0007844	1.8377	0.00096714	0.34721	0.00018273	526.2884325931427	60.484	0.58897	60.484	60.256	60.845	0					33	13	3	0	0	0	0.22343	1	6971	6971		85.909	29.188	1	4142900			26257	9466	18135	18173	30251	30251	124				0.03733703364264329
ILFDNESVS	9	Unmodified	_ILFDNESVS_					0	0	0			REV__ENSG00000166278|ENST00000299367|C2	REV__ENSG00000166278|ENST00000299367|C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2537841796875	2	512.253297	1022.49204	0.0020289	1.0393E-06	0.28449	0.00014573	0.28652	0.00014677	512.2535245500372	53.952	2.95	54.05	53.631	56.581	0.098015					227	82	5	0	0	0	0.2508	1	5819	5819		82.241	13.454	1	29194000	+		26258	25997	18136	18174	30252	30252					-0.018305464102354563
ILFDNESVS	9	Unmodified	_ILFDNESVS_					0	0	0			REV__ENSG00000166278|ENST00000299367|C2	REV__ENSG00000166278|ENST00000299367|C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2530517578125	2	512.253297	1022.49204	0.46489	0.00023814	-0.70196	-0.00035958	-0.23707	-0.00012144	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.53979	1	5730	5730		56.721	1.2168	1	42815000	+		26259	25997	18136	18174	30253	30253					-0.018305464102354563
ILFDVVLVV	9	Unmodified	_ILFDVVLVV_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;ENST00000494929.5_1_22:20819888-20843498:-|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.32415771484375	2	508.823161	1015.63177	-0.43365	-0.00022065	2.394	0.0012181	1.9603	0.00099745	509.3247986483423	78.776	1.2107	78.776	78.405	79.616	0					61	28	4	0	0	0	0.024293	1	9809	9809		42.474	6.8562	1	568620			26260	2096	18137	18175	30254	30254					0.12457862664939512
ILFEDIFDV	9	Unmodified	_ILFEDIFDV_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H;ENST00000443489.5_1_3:184081178-184081358:+|nuORF;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.7887573242188	2	555.789515	1109.56448	0.6261	0.00034798	-0.9793	-0.00054429	-0.35321	-0.00019631	555.7889361158149	105.64	0.48285	105.64	105.41	105.89	0					23	13	3	0	0	0	0.43973	1	13561	13561		63.306	7.8021	1	182230			26261	18454	18138	18176	30255	30255					0.014077876633336928
ILFEDIFDV	9	Unmodified	_ILFEDIFDV_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H;ENST00000443489.5_1_3:184081178-184081358:+|nuORF;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.7884521484375	2	555.789515	1109.56448	0.21265	0.00011819	-0.34811	-0.00019348	-0.13547	-7.5292E-05	555.7893337760734	105.68	0.40529	105.68	105.49	105.9	0.00014496					32	14	3	0	0	0	0.94809	1	13498	13498		29.15	1.2673	1	144520			26262	18454	18138	18176	30256	30256					0.014077876633336928
ILFEDIFDV	9	Unmodified	_ILFEDIFDV_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H;ENST00000443489.5_1_3:184081178-184081358:+|nuORF;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.7901000976562	2	555.789515	1109.56448	0.002902	1.6129E-06	-0.17206	-9.5632E-05	-0.16916	-9.4019E-05	555.7893709768459	105.6	0.48909	105.48	105.28	105.77	-0.12444					29	14	3	0	0	0	0.35646	1	13151	13151		68.787	15.435	1	160350			26263	18454	18138	18176	30257	30257					0.014077876633336928
ILFEDIFDV	9	Unmodified	_ILFEDIFDV_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H;ENST00000443489.5_1_3:184081178-184081358:+|nuORF;POLR2H|p.D71*|1|0.09|ENSG00000163882|chr3:184365185-184365210|GGATGATGGTGAATACAACCCCACTG/-|frameshift_variant;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	555.789515	1109.56448	-0.88137	-0.00048985	1.2123	0.00067381	0.33097	0.00018395	556.2917223455771	105.58	0.34238	105.45	105.35	105.69	-0.13099	-0.11679	0.001645	NaN	68.787	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139260			26264	18454	18138	18176							0.014077876633336928
ILFEINPKL	9	Unmodified	_ILFEINPKL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8270263671875	2	543.831517	1085.64848	0.52697	0.00028658	-1.3782	-0.00074953	-0.85127	-0.00046295	543.8305991447684	74.571	1.0026	74.571	74.34	75.343	0					46	24	4	0	0	0	0.15388	1	9140	9140		98.582	18.869	1	1194900			26265	8932	18139	18177	30258	30258					0.10908363550902322
ILFEINPKL	9	Unmodified	_ILFEINPKL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8292846679688	2	543.831517	1085.64848	-1.1426	-0.00062136	0.31163	0.00016948	-0.83093	-0.00045189	543.8314449270717	74.618	1.0722	74.628	74.397	75.469	0.0096512					48	26	3	0	0	0	0.10464	1	9068	9068		109.48	21.782	1	1060700			26266	8932	18139	18177	30259	30259					0.10908363550902322
ILFEINPKL	9	Unmodified	_ILFEINPKL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.8294677734375	2	543.831517	1085.64848	-0.15745	-8.5627E-05	-0.21088	-0.00011468	-0.36834	-0.00020031	543.8312476344895	74.758	1.2099	74.483	74.132	75.342	-0.27573					59	28	4	0	0	0	0.28753	3	8811	8811;8823;8830		77.318	10.888	1	1312600			26267	8932	18139	18177	30260;30261;30262	30260					0.10908363550902322
ILFEINPKL	9	Unmodified	_ILFEINPKL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8296508789062	2	543.831517	1085.64848	-0.1152	-6.2651E-05	-0.22571	-0.00012275	-0.34091	-0.0001854	543.8312130458337	74.774	1.0118	74.511	74.142	75.153	-0.26326					49	23	3	0	0	0	0.28753	2	8841	8829;8841		77.318	8.614	1	1300900			26268	8932	18139	18177	30263;30264	30264					0.10908363550902322
ILFEINPKL	9	Unmodified	_ILFEINPKL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.83056640625	2	543.831517	1085.64848	-0.084144	-4.576E-05	-0.18886	-0.00010271	-0.273	-0.00014847	543.8312062375346	74.543	0.80163	74.361	74.049	74.851	-0.18279					46	18	4	0	0	0	0.30449	2	8789	8778;8789		75.043	10.573	1	1175700			26269	8932	18139	18177	30265;30266	30266					0.10908363550902322
ILFESQFSV	9	Unmodified	_ILFESQFSV_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;ENST00000468496.5_1_17:40362419-40369297:-|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.280517578125	2	535.281857	1068.54916	0.2655	0.00014212	1.2188	0.00065238	1.4843	0.0007945	535.2811420678512	84.119	1.73	83.96	83.671	85.401	-0.15869					52	40	3	0	0	0	0.12914	1	10177	10177		104.06	48.553	1	478140			26270	8408	18140	18178	30267	30267					0.017629208661446683
ILFESQFSV	9	Unmodified	_ILFESQFSV_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;ENST00000468496.5_1_17:40362419-40369297:-|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.281857	1068.54916	0.30296	0.00016217	1.722	0.00092178	2.025	0.0010839	535.2815088593777	84.211	0.85374	84.008	83.776	84.63	-0.20329	0.011321	-5.4694E-05	NaN	104.06	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362000			26271	8408	18140	18178							0.017629208661446683
ILFESQFSV	9	Unmodified	_ILFESQFSV_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;ENST00000468496.5_1_17:40362419-40369297:-|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.281857	1068.54916	-0.090764	-4.8584E-05	2.3213	0.0012425	2.2305	0.0011939	535.2814372269604	84.16	0.94699	84.022	83.629	84.576	-0.13789	0.025083	0.0005868	NaN	104.06	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523850			26272	8408	18140	18178							0.017629208661446683
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.7960815429688	2	542.79854	1083.58253	-1.1081	-0.00060146	3.7275	0.0020233	2.6194	0.0014218	542.800454900305	40.092	0.77907	39.98	39.568	40.347	-0.11223					70	20	5	0	0	0	0.37611	2	3477	3477;3489		67.494	7.3754	1	898880			26273	1410	18141	18179	30268;30269	30268					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.79638671875	2	542.79854	1083.58253	-1.4879	-0.00080763	4.0842	0.0022169	2.5963	0.0014093	542.8006500844306	40.228	0.68888	40.251	39.873	40.562	0.023006					57	18	4	0	0	0	0.28753	1	3464	3464		77.318	6.0219	1	998830			26274	1410	18141	18179	30270	30270					0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.79854	1083.58253	-0.7256	-0.00039385	0.80237	0.00043552	0.076768	4.167E-05	542.7987279340366	40.018	0.56217	39.868	39.591	40.153	-0.1497	-0.12098	-0.0013264	NaN	77.318	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1193400			26275	1410	18141	18179							0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.79854	1083.58253	-0.38783	-0.00021051	0.68075	0.00036951	0.29293	0.000159	542.7986262738547	40.196	0.5248	39.971	39.734	40.259	-0.225	-0.018891	-0.0014584	NaN	77.318	53	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1207200			26276	1410	18141	18179							0.04407967428710435
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.79854	1083.58253	-1.4824	-0.00080464	1.7027	0.00092422	0.22031	0.00011958	542.7992574884892	40.199	0.57504	39.969	39.733	40.308	-0.23021	-0.020537	-0.00034899	NaN	77.318	50	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1177300			26277	1410	18141	18179							0.04407967428710435
ILFGRCVAQ	9	Unmodified	_ILFGRCVAQ_					0	0	0			REV__MYH8|p.M800I|1|0.11|ENSG00000133020|chr17:10406073-10406073|C/G|missense_variant	REV__MYH8|p.M800I|1|0.11|ENSG00000133020|chr17:10406073-10406073|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.78009033203125	2	503.778762	1005.54297	-0.46554	-0.00023453	0.10432	5.2553E-05	-0.36122	-0.00018198	503.7786416227463	23.056	2.3766	23.056	21.146	23.523	0					94	51	3	0	0	0	0.80658	1	837	837		38.806	3.6054	1	711780	+		26278	36410	18142	18180	30271	30271					0.04042124153625082
ILFILARYFI	10	Unmodified	_ILFILARYFI_					0	0	0			REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.8954467773438	2	634.891909	1267.76927	0.73688	0.00046784	0.59072	0.00037504	1.3276	0.00084288	634.8922740551877	104.3	1.0119	104.3	103.98	104.99	0.0031357					77	28	5	0	0	0	1.0541	1	13406	13406		38.806	0.99462	1	1973800	+		26279	29937	18143	18181	30272	30272					0.14609191264366927
ILFINVPLP	9	Unmodified	_ILFINVPLP_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2845458984375	2	513.323328	1024.6321	-0.31058	-0.00015943	-0.6716	-0.00034475	-0.98218	-0.00050417	513.3224602009217	62.118	0.14313	61.891	61.766	61.909	-0.22663					5	3	2	0	0	0	0.024466	1	7174	7174		25.45	0	1	129270			26280	9783	18144	18182	30273	30273					0.12077282384802857
ILFIVAFED	9	Unmodified	_ILFIVAFED_					0	0	0			REV__ENST00000464478.5_1_1:51924787-51930980:-|nuORF	REV__ENST00000464478.5_1_1:51924787-51930980:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7974853515625	2	533.794601	1065.57465	-1.5049	-0.00080331	1.4373	0.00076724	-0.067572	-3.607E-05	533.7949804003463	91.289	1.0641	91.14	90.853	91.917	-0.1487					52	24	4	0	0	0	0.024497	1	11146	11146		28.254	0	1	596980	+		26281	32974	18145	18183	30274	30274					0.044483953885674055
ILFKLRLY	8	Unmodified	_ILFKLRLY_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.300048828125	2	533.344595	1064.67464	-0.52174	-0.00027827	3.694	0.0019702	3.1723	0.0016919	533.3463202331412	61.257	0.29288	61.044	60.873	61.166	-0.21339					10	7	2	0	0	0	0.027866	1	7049	7049		26.796	7.4361	1	112570	+		26282	25067	18146	18184	30275	30275					0.1448867751303169
ILFKSIFEV	9	Unmodified	_ILFKSIFEV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.3263549804688	2	548.326068	1094.63758	0.10492	5.7529E-05	0.20127	0.00011036	0.30618	0.00016789	548.3261359377886	81.438	1.1391	81.209	80.939	82.078	-0.2289					66	26	4	0	0	0	0.03666	2	9784	9771;9784		136.27	43.073	1	1401900			26283	6289	18147	18185	30276;30277	30277					0.09404961176619508
ILFKSIFEV	9	Unmodified	_ILFKSIFEV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.3260498046875	2	548.326068	1094.63758	0.1336	7.3254E-05	0.031932	1.7509E-05	0.16553	9.0763E-05	548.3260011784181	81.447	1.134	81.254	80.924	82.058	-0.19334					63	26	5	0	0	0	0.041068	3	9797	9785;9797;9811		132.76	50.517	1	1324600			26284	6289	18147	18185	30278;30279;30280	30279					0.09404961176619508
ILFKSIFEV	9	Unmodified	_ILFKSIFEV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.32666015625	2	548.326068	1094.63758	-0.70465	-0.00038638	0.94505	0.0005182	0.2404	0.00013182	548.32653983004	81.377	1.1413	81.235	80.942	82.084	-0.14248					60	26	4	0	0	0	0.014034	3	9769	9758;9769;9782		166.68	46.058	1	1214000			26285	6289	18147	18185	30281;30282;30283	30282					0.09404961176619508
ILFKSIFEV	9	Unmodified	_ILFKSIFEV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.326068	1094.63758	-0.8196	-0.00044941	0.80612	0.00044202	-0.013479	-7.3906E-06	548.3268362726828	81.505	0.5717	81.505	81.258	81.83	0	0.20451	0.00037232	NaN	166.68	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299980			26286	6289	18147	18185							0.09404961176619508
ILFLKWDL	8	Unmodified	_ILFLKWDL_					0	0	0		ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.7792358398438	2	524.315503	1046.61645	0.10831	5.6788E-05	-4.1489	-0.0021753	-4.0406	-0.0021185	524.3131695033535	77.372	1.4914	77.162	76.912	78.403	-0.21087					46	35	2	0	0	0	0.027866	1	9642	9642		71.378	28.903	1	199970			26287	12230	18148	18186	30284	30284					0.09500995867733764
ILFMLSVASV	10	Unmodified	_ILFMLSVASV_					0	0	0		ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.79443359375	2	540.312103	1078.60965	-2.267	-0.0012249	-4.2367	-0.0022891	-6.5036	-0.003514	540.3096989549055	52.017	0.80836	51.748	51.281	52.089	-0.26903					43	21	3	0	0	0	0.03519	1	5317	5317		32.812	0	1	309110			26288	3877	18149	18187	30285	30285					0.07349314924863393
ILFNDPFW	8	Unmodified	_ILFNDPFW_					0	0	0			REV__ENSG00000136051|ENST00000332180|WASHC4	REV__ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2867431640625	2	526.26601	1050.51747	-1.6875	-0.00088806	-2.0256	-0.001066	-3.713	-0.001954	526.2648601551105	60.4	0.70952	60.479	60.049	60.759	0.078888					40	18	3	0	0	0	0.027866	1	6869	6869		82.305	5.4584	1	705010	+		26289	23619	18150	18188	30286	30286					-0.00577027097165228
ILFNDPFW	8	Unmodified	_ILFNDPFW_					0	0	0			REV__ENSG00000136051|ENST00000332180|WASHC4	REV__ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2852172851562	2	526.26601	1050.51747	-0.46506	-0.00024475	-3.1604	-0.0016632	-3.6254	-0.0019079	526.2641648990278	60.823	1.0059	60.617	60.295	61.301	-0.20599					45	24	3	0	0	0	0.027866	1	6771	6771		37.159	10.363	1	636010	+		26290	23619	18150	18188	30287	30287					-0.00577027097165228
ILFNKLFGTAK	11	Unmodified	_ILFNKLFGTAK_					0	0	0			REV__nc|ENSG00000131473|P53396-2|ACLY	REV__nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.7533874511719	3	417.920174	1250.73869	-0.49391	-0.00020642	1.3862	0.00057932	0.89228	0.0003729	417.9206342966941	45.804	1.7625	45.601	45.226	46.988	-0.20226					130	49	4	0	0	0	0.024779	1	4342	4342		21.78	18.569	1	1836600	+		26291	23214	18151	18189	30288	30288					0.123354128793153
ILFPALLDL	9	Unmodified	_ILFPALLDL_					0	0	0			REV__POT1|p.S489L|1|0.14|ENSG00000128513|chr7:124835318-124835318|G/A|missense_variant	REV__POT1|p.S489L|1|0.14|ENSG00000128513|chr7:124835318-124835318|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.81640625	2	507.815336	1013.61612	-0.11091	-5.6321E-05	0.70363	0.00035731	0.59272	0.00030099	507.815517074982	103.91	1.1996	103.91	103.48	104.68	0.0031357					75	29	4	0	0	0	0.52323	2	13317	13275;13317		57.811	10.52	1	969680	+		26292	37392	18152	18190	30289;30290	30290					0.1098557614790252
ILFPALLDL	9	Unmodified	_ILFPALLDL_					0	0	0			REV__POT1|p.S489L|1|0.14|ENSG00000128513|chr7:124835318-124835318|G/A|missense_variant	REV__POT1|p.S489L|1|0.14|ENSG00000128513|chr7:124835318-124835318|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8161315917969	2	507.815336	1013.61612	0.18722	9.5075E-05	0.41141	0.00020892	0.59863	0.00030399	507.81521355892863	103.82	0.65723	103.65	103.28	103.94	-0.16791					29	15	3	0	0	0	0.75282	1	12900	12900		42.474	10.52	1	145730	+		26293	37392	18152	18190	30291	30291					0.1098557614790252
ILFPLCRDP	9	Unmodified	_ILFPLCRDP_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU;REV__nc|ENSG00000152894|Q15262|PTPRK;REV__nc|ENSG00000173482|P28827|PTPRM	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2948608398438	2	537.294245	1072.57394	-0.72556	-0.00038984	2.7554	0.0014805	2.0299	0.0010906	537.2956834278802	56.28	0.67887	56.28	55.999	56.678	0					48	18	4	0	0	0	0.12602	1	6277	6277		104.75	0.73295	1	9079500	+		26294	20251;24868;26777	18153	18191	30292	30292					0.04055277467864471
ILFPLCRDP	9	Unmodified	_ILFPLCRDP_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU;REV__nc|ENSG00000152894|Q15262|PTPRK;REV__nc|ENSG00000173482|P28827|PTPRM	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2948608398438	2	537.294245	1072.57394	-1.3285	-0.00071381	3.1989	0.0017187	1.8703	0.0010049	537.2959198698738	56.095	0.85803	56.193	55.894	56.752	0.097893					44	18	3	0	0	0	0.12602	1	6140	6140		104.75	8.7129	1	7906800	+		26295	20251;24868;26777	18153	18191	30293	30293					0.04055277467864471
ILFPPTVNI	9	Unmodified	_ILFPPTVNI_					0	0	0			REV__ENST00000509962.5_1_5:135489304-135489361:+|nuORF	REV__ENST00000509962.5_1_5:135489304-135489361:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8233337402344	2	507.305136	1012.59572	-0.68809	-0.00034907	-2.7206	-0.0013802	-3.4087	-0.0017292	507.3033483045315	60.384	0.47629	60.384	60.143	60.619	0					21	12	2	0	0	0	0.024025	1	6911	6911		71.877	8.5712	1	361780	+		26296	34095	18154	18192	30294	30294					0.08992405488095301
ILFPSFLPS	9	Unmodified	_ILFPSFLPS_					0	0	0		ENST00000522712.6_1_11:46958356-47074212:+|nuORF	ENST00000522712.6_1_11:46958356-47074212:+|nuORF	ENST00000522712.6_1_11:46958356-47074212:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27667236328125	2	510.791861	1019.56917	-0.18599	-9.5001E-05	-3.4149	-0.0017443	-3.6009	-0.0018393	510.7898685777529	73.484	0.67845	73.207	72.926	73.605	-0.2769					39	16	3	0	0	0	0.024294	1	8602	8602		37.159	0	1	804940			26297	16033	18155	18193	30295	30295					0.06016716596764127
ILFQFRPLT	9	Unmodified	_ILFQFRPLT_					0	0	0			REV__ENST00000261401.7_1_12:109039619-109039913:-|nuORF	REV__ENST00000261401.7_1_12:109039619-109039913:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.2872924804688	2	567.837134	1133.65972	0.3545	0.0002013	-3.803	-0.0021595	-3.4485	-0.0019582	567.8348410222784	69.113	0.37301	68.87	68.626	68.999	-0.24277					12	8	2	0	0	0	0.024427	1	8005	8005		26.693	1.1189	1	88368	+		26298	29622	18156	18194	30296	30296					0.09823185645018384
ILFQKGKIE	9	Unmodified	_ILFQKGKIE_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3262939453125	2	538.329142	1074.64373	0.47679	0.00025667	-4.3339	-0.002333	-3.8571	-0.0020764	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	0.97516	1	12458	12458		25.45	2.4077	1	21461000			26299	9730	18157	18195	30297	30297					0.10939479408148145
ILFRSTWY	8	Unmodified	_ILFRSTWY_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2444458007812	2	543.292559	1084.57057	0.45321	0.00024623	3.3645	0.0018279	3.8177	0.0020741	543.293426479407	67.807	0.3773	67.552	67.323	67.7	-0.25517					12	8	2	0	0	0	0.027866	1	7786	7786		42.474	18.272	1	96135	+		26300	21385	18158	18196	30298	30298					0.031663506855238666
ILFRVRLL	8	Unmodified	_ILFRVRLL_					0	0	0		ENST00000443963.5_1_3:186507222-186507279:+|nuORF	ENST00000443963.5_1_3:186507222-186507279:+|nuORF	ENST00000443963.5_1_3:186507222-186507279:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2811889648438	2	515.350212	1028.68587	-0.76634	-0.00039493	0.62922	0.00032427	-0.13712	-7.0667E-05	515.3507008308184	65.246	0.30306	65.246	65.055	65.358	0					15	8	3	0	0	0	0.027866	1	7733	7733		37.028	7.1869	1	450160			26301	14410	18159	18197	30299	30299					0.17267499607191894
ILFSYLSVW	9	Unmodified	_ILFSYLSVW_					0	0	0		ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8609619140625	2	564.310418	1126.60628	-0.82283	-0.00046433	-2.0386	-0.0011504	-2.8614	-0.0016147	564.8108236827878	65.856	0.57485	65.642	65.421	65.996	-0.21327					32	13	3	0	0	0	0.024487	1	7589	7589		31.955	0	1	521560			26302	13050	18160	18198	30300	30300					0.04804388142520111
ILFSYLSVW	9	Unmodified	_ILFSYLSVW_					0	0	0		ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.8603515625	2	564.310418	1126.60628	-0.55313	-0.00031214	-2.3456	-0.0013236	-2.8987	-0.0016358	564.8108065112676	65.875	0.69392	65.624	65.312	66.006	-0.25112					38	16	4	0	0	0	0.024412	1	7578	7578		40.573	20.576	1	460600			26303	13050	18160	18198	30301	30301					0.04804388142520111
ILFTGRPNGF	10	Unmodified	_ILFTGRPNGF_					0	0	0			REV__nc|ENSG00000010810|P06241-3|FYN	REV__nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2805786132812	2	561.308741	1120.60293	-0.21896	-0.00012291	-3.2578	-0.0018286	-3.4767	-0.0019515	561.3066990020078	39.489	0.49171	39.263	39.059	39.551	-0.2257					36	12	4	0	0	0	0.03519	1	3324	3324		21.96	7.095	1	850070	+		26304	19911	18161	18199	30302	30302					0.047451380885149774
ILFTKIKDG	9	Unmodified	_ILFTKIKDG_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7996215820312	2	517.815867	1033.61718	-0.40883	-0.0002117	-4.102	-0.0021241	-4.5108	-0.0023358	517.8140739896558	104.53	0.44059	104.4	104.2	104.64	-0.12927					12	8	2	0	0	0	0.024541	1	12999	12999		31.955	11.473	1	199750	+		26305	21318	18162	18200	30303	30303					0.10171790516801593
ILFTVKLAD	9	Unmodified	_ILFTVKLAD_					0	0	0			REV__ENSG00000212747|ENST00000391440|RTL8B	REV__ENSG00000212747|ENST00000391440|RTL8B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.3235168457031	2	510.310418	1018.60628	-0.24008	-0.00012251	0.59468	0.00030347	0.35461	0.00018096	510.31036564904764	78.906	0.37373	78.925	78.777	79.15	0.018677					19	8	3	0	0	0	0.024405	1	9728	9728		35.618	0	1	306710	+		26306	23464	18163	18201	30304	30304					0.09772388142505406
ILFVCFAGQL	10	Carbamidomethyl (C)	_ILFVC(Carbamidomethyl (C))FAGQL_	ILFVC(1)FAGQL		ILFVC(56)FAGQL		0	1	0		nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	nc|ENSG00000078295|Q08462-2|ADCY2	nc|ENSG00000078295|Q08462-2|ADCY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.3171997070312	2	584.315177	1166.6158	-0.61334	-0.00035838	3.8774	0.0022656	3.2641	0.0019072	584.3173839058031	21.996	0.96656	22.068	21.684	22.651	0.071487					62	19	4	0	0	0	0.87795	1	678	678		55.504	15.446	1	538550			26307	1634	18164	18202	30305	30305	23				0.039158331563839965
ILFVRSMVQ	9	Unmodified	_ILFVRSMVQ_					0	0	0			REV__ENSG00000206527|ENST00000383657|HACD2	REV__ENSG00000206527|ENST00000383657|HACD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2764282226562	2	546.815344	1091.61614	-1.7171	-0.00093894	-0.69359	-0.00037927	-2.4107	-0.0013182	546.8145720507996	79.743	0.58901	79.571	79.356	79.945	-0.17226					21	13	2	0	0	0	0.024477	1	9847	9847		27.882	0	1	92787	+		26308	28708	18165	18203	30306	30306					0.07399252876257378
ILGAGPVLEAF	11	Unmodified	_ILGAGPVLEAF_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B-ABHD8|1|fusion;nc|ENSG00000066933|B2RTY4-3|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	ENSG00000099331|ENST00000682292|MYO9B;ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.7666015625	2	543.813325	1085.6121	-1.3461	-0.00073204	-2.2417	-0.0012191	-3.5879	-0.0019511	543.8116602749396	46.113	0.79739	45.911	45.706	46.504	-0.20226					35	21	2	0	0	0	0.024734	1	4479	4479		23.042	0	1	711540			26309	2071;1349	18166	18204	30307	30307					0.07271486654167347
ILGATLVIRA	10	Unmodified	_ILGATLVIRA_					0	0	0			REV__CLDN9|p.V123L|1|0.14|ENSG00000213937|chr16:3013729-3013729|G/C|missense_variant	REV__CLDN9|p.V123L|1|0.14|ENSG00000213937|chr16:3013729-3013729|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.816162109375	2	513.837134	1025.65972	-0.48273	-0.00024805	-0.55424	-0.00028479	-1.037	-0.00053283	513.8367035091914	60.321	0.97148	60.108	59.748	60.719	-0.21339					78	25	5	0	0	0	0.03519	1	6920	6920		27.882	0	1	3324600	+		26310	19493	18167	18205	30308	30308					0.14791185645026417
ILGDILLKV	9	Unmodified	_ILGDILLKV_					0	0	0		ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8;nc|ENSG00000155666|Q8N371-2|KDM8;ENST00000562269.1_1_16:27214862-27222526:+|nuORF	ENSG00000155666|ENST00000286096|KDM8	ENSG00000155666|ENST00000286096|KDM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2923583984375	2	492.328611	982.642668	-0.09377	-4.6166E-05	0.52889	0.00026039	0.43512	0.00021422	492.32869838015915	79.352	0.7511	79.352	79.16	79.911	0					33	17	3	0	0	0	0.023007	1	9839	9839		99.375	8.5983	1	384130			26311	6482	18168	18206	30309	30309					0.1506526503923169
ILGEDTIQL	9	Unmodified	_ILGEDTIQL_					0	0	0			REV__nc|ENSG00000108306|Q96IG2-2|FBXL20	REV__nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2908935546875	2	501.279315	1000.54408	-0.62318	-0.00031239	1.7739	0.00088921	1.1507	0.00057683	501.2804219017852	85.017	0.6604	84.959	84.361	85.022	-0.05761					25	15	2	0	0	0	0.023417	1	10599	10599		68.787	0	1	1965200	+		26312	21722	18169	18207	30310	30310					0.04382617003534506
ILGELENKL	9	Unmodified	_ILGELENKL_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MSMS	OPSCC_40_ClassI_Rep-3	6	514.8028564453125	2	514.802957	1027.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.815	1	59.566	59.066	60.066	-0.24842								0	0	0	0.16821	1	6612	6612		77.318	2.2743	1		+		26313	23527	18170	18208	30311	30311					0.0786689627452688
ILGERDVL	8	Unmodified	_ILGERDVL_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.8057556152344	2	457.768917	913.523281	0.19419	8.8892E-05	-0.36253	-0.00016596	-0.16835	-7.7065E-05	457.76880819026803	69.174	0.69199	69.174	68.977	69.669	0					28	17	2	0	0	0	0.027866	1	8342	8342		65.803	0	1	288990	+		26314	22345	18171	18209	30312	30312					0.06306071414530834
ILGERTPSP	9	Unmodified	_ILGERTPSP_					0	0	0			REV__ENSG00000111181|ENST00000684302|SLC6A12	REV__ENSG00000111181|ENST00000684302|SLC6A12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7455749511719	2	485.271824	968.529095	-0.13856	-6.7238E-05	-4.2998	-0.0020866	-4.4384	-0.0021538	485.2703872611697	62.477	0.27383	62.218	61.977	62.25	-0.25824					7	6	2	0	0	0	0.024021	1	7014	7014		40.778	0	1	75478	+		26315	21897	18172	18210	30313	30313					0.04357169926197457
ILGFPLVF	8	Unmodified	_ILGFPLVF_					0	0	0			REV__ENSG00000120436|ENST00000366834|GPR31	REV__ENSG00000120436|ENST00000366834|GPR31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.7484436035156	2	453.278389	904.542226	0.11547	5.234E-05	-4.4636	-0.0020232	-4.3481	-0.0019709	453.2763695655238	43.077	0.32996	42.965	42.815	43.145	-0.11253					13	8	2	0	0	0	0.027866	1	3902	3902		16.705	6.5202	1	112090	+		26316	22531	18173	18211	30314	30314					0.08613652776239178
ILGGIVVVLV	10	Unmodified	_ILGGIVVVLV_					0	0	0		ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2879943847656	2	491.338978	980.663404	-0.94055	-0.00046213	0.021405	1.0517E-05	-0.91915	-0.00045161	491.33874794408354	75.401	1.0349	75.401	75.036	76.071	0					58	27	3	0	0	0	0.03519	1	9344	9344		54.765	27.969	1	823640			26317	5764	18174	18212	30315	30315					0.17229855418906936
ILGGMDLLLV	10	Unmodified	_ILGGMDLLLV_					0	0	0		ENST00000478344.6_1_9:140240296-140248823:-|nuORF;ENST00000491734.6_1_9:140201404-140249090:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF;ENSG00000187609|ENST00000340951|EXD3;nc|ENSG00000187609|Q8N9H8-3|EXD3	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.310546875	2	522.312103	1042.60965	-0.87302	-0.00045599	-1.8228	-0.00095209	-2.6959	-0.0014081	522.3108128623229	102.27	0.78159	102.27	101.95	102.73	0					46	17	4	0	0	0	0.62679	1	13100	13100		73.975	11.867	1	751540			26318	15143	18175	18213	30316	30316					0.0900531492486607
ILGGMLSY	8	Unmodified	_ILGGMLSY_					0	0	0		TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.6226501464844	2	427.228039	852.441526	0.98656	0.00042148	3.9649	0.0016939	4.9515	0.0021154	427.22978710178444	71.129	1.0055	70.919	70.567	71.573	-0.20987					44	23	3	0	0	0	0.027866	1	8340	8340		28.254	7.7724	1	182670			26319	38057	18176	18214	30317	30317					0.009402527310726327
ILGIFPIKK	9	Unmodified	_ILGIFPIKK_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2943115234375	2	514.846971	1027.67939	-0.32785	-0.00016879	-4.3205	-0.0022244	-4.6484	-0.0023932	514.8447145978362	53.818	0.38234	53.621	53.387	53.769	-0.19739					18	11	2	0	0	0	0.024535	1	5674	5674		12.207	1.3413	1	213690			26320	9768	18177	18215	30318	30318					0.16665561655781858
ILGIHRVKI	9	Unmodified	_ILGIHRVKI_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.8270874023438	2	524.853119	1047.69168	-0.6893	-0.00036178	4.2198	0.0022148	3.5305	0.001853	524.8545216726505	97.901	0.46452	97.901	97.683	98.148	0					13	10	2	0	0	0	0.024535	1	12476	12476		33.516	1.5607	1	30835	+		26321	19836	18178	18216	30319	30319					0.1697459811882709
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2817687988281	2	462.28166	922.548768	0.080718	3.7314E-05	0.41491	0.00019181	0.49563	0.00022912	462.2817213082007	76.654	1.67	76.654	75.881	77.551	0					98	40	4	0	0	0	0.014988	4	9454	9418;9430;9443;9454		161.9	50.25	1	5053300			26322	10490	18179	18217	30320;30321;30322;30323	30323					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.28179931640625	2	462.28166	922.548768	-0.33213	-0.00015354	0.55684	0.00025742	0.22472	0.00010388	462.28178818302206	76.859	1.7027	76.631	75.74	77.443	-0.22843					99	41	4	0	0	0	0.021872	6	9418	9409;9418;9431;9442;9454;9466		148.04	27.177	1	5077800			26323	10490	18179	18217	30324;30325;30326;30327;30328;30329	30325					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.28143310546875	2	462.28166	922.548768	0.78234	0.00036166	-0.44709	-0.00020668	0.33525	0.00015498	462.28131168694944	76.643	1.7887	76.655	75.825	77.614	0.011635					104	43	4	0	0	0	0.013333	6	9378	9344;9356;9367;9378;9390;9402		176.41	60.952	1	4920600			26324	10490	18179	18217	30330;30331;30332;30333;30334;30335	30333					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2819519042969	2	462.28166	922.548768	0.28956	0.00013386	-0.055725	-2.5761E-05	0.23383	0.0001081	462.28152014107593	76.87	0.91814	76.602	76.008	76.927	-0.26806					52	21	3	0	0	0	0.096521	2	9128	9105;9128		111.65	37.393	1	933840			26325	10490	18179	18217	30336;30337	30337					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2825012207031	2	462.28166	922.548768	0.27194	0.00012571	-0.068676	-3.1748E-05	0.20326	9.3965E-05	462.2814614836224	76.814	0.99651	76.562	75.867	76.863	-0.25162					50	23	3	0	0	0	0.53979	1	9121	9121		56.721	5.3856	1	865930			26326	10490	18179	18217	30338	30338					0.08439545936948889
ILGIQPPSV	9	Unmodified	_ILGIQPPSV_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2822570800781	2	462.28166	922.548768	-0.20373	-9.4181E-05	0.35598	0.00016456	0.15224	7.0379E-05	462.281672378442	76.715	1.0473	76.546	75.892	76.939	-0.16854					58	24	3	0	0	0	0.033448	3	9120	9094;9106;9120		138.83	14.231	1	920980			26327	10490	18179	18217	30339;30340;30341	30341					0.08439545936948889
ILGITREQ	8	Unmodified	_ILGITREQ_					0	0	0		ENSG00000185565|ENST00000490035|LSAMP	ENSG00000185565|ENST00000490035|LSAMP	ENSG00000185565|ENST00000490035|LSAMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2927551269531	2	465.274367	928.53418	-0.072794	-3.3869E-05	0.95016	0.00044208	0.87736	0.00040821	465.27499461538196	61.237	0.18379	61.023	60.912	61.096	-0.2134					6	4	2	0	0	0	0.027866	1	7042	7042		33.516	3.674	1	36290			26328	9452	18180	18218	30342	30342					0.06705473788804284
ILGKTTSSA	9	Unmodified	_ILGKTTSSA_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2518615722656	2	439.2531	876.491647	-0.43149	-0.00018953	0.071916	3.1589E-05	-0.35958	-0.00015795	439.2526196526615	89.96	1.6578	89.96	88.978	90.636	0					92	39	4	0	0	0	0.85329	1	11400	11400		35.618	6.4687	1	2093000	+		26329	21812	18181	18219	30343	30343					0.048460786605687645
ILGLEPTL	8	Unmodified	_ILGLEPTL_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2620544433594	2	428.262936	854.51132	0.10911	4.6729E-05	-2.7902	-0.0011949	-2.6811	-0.0011482	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0572	1	11367	11367		28.254	2.8041	1	88816000	+		26330	21321	18182	18220	30344	30344					0.0782445467133357
ILGLKCFS	8	Unmodified	_ILGLKCFS_					0	0	0			REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2617492675781	2	440.751682	879.48881	2.1728	0.00095765	-1.8406	-0.00081126	0.33214	0.00014639	440.7533187447378	19.862	0.4785	19.929	19.687	20.165	0.066195					18	9	3	0	0	0	0.027866	1	413	413		37.028	3.5129	1	22493	+		26331	19248	18183	18221	30345	30345					0.04424532002065007
ILGLQSPPV	9	Unmodified	_ILGLQSPPV_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2817077636719	2	462.28166	922.548768	0.080718	3.7314E-05	0.41491	0.00019181	0.49563	0.00022912	462.2817213082007	76.654	1.67	76.654	75.881	77.551	0					98	40	4	0	0	0	0.047345	1	9466	9466		129.68	2.2209	1	5053300			26332	1466	18184	18222	30346	30346					0.08439545936948889
ILGLQSPPV	9	Unmodified	_ILGLQSPPV_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2821044921875	2	462.28166	922.548768	0.28956	0.00013386	-0.055725	-2.5761E-05	0.23383	0.0001081	462.28152014107593	76.87	0.91814	76.602	76.008	76.927	-0.26806					52	21	3	0	0	0	0.29158	2	9116	9116;9142		76.774	0	1	933840			26333	1466	18184	18222	30347;30348	30347					0.08439545936948889
ILGLQSPPV	9	Unmodified	_ILGLQSPPV_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.28271484375	2	462.28166	922.548768	0.27194	0.00012571	-0.068676	-3.1748E-05	0.20326	9.3965E-05	462.2814614836224	76.814	0.99651	76.562	75.867	76.863	-0.25162					50	23	3	0	0	0	0.33245	2	9145	9133;9145		71.296	10.324	1	865930			26334	1466	18184	18222	30349;30350	30350					0.08439545936948889
ILGLRVFV	8	Unmodified	_ILGLRVFV_					0	0	0			REV__ENSG00000148483|ENST00000377495|TMEM236	REV__ENSG00000148483|ENST00000377495|TMEM236	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7873840332031	2	458.802563	915.590573	-0.24551	-0.00011264	0.13719	6.2941E-05	-0.10833	-4.9702E-05	458.80251415611355	92.185	0.4694	92.176	92.005	92.475	-0.0082932					17	11	2	0	0	0	0.027866	1	11639	11639		39.021	17.319	1	184140	+		26335	24621	18185	18223	30351	30351					0.12940146416133302
ILGLRVFV	8	Unmodified	_ILGLRVFV_					0	0	0			REV__ENSG00000148483|ENST00000377495|TMEM236	REV__ENSG00000148483|ENST00000377495|TMEM236	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.78753662109375	2	458.802563	915.590573	0.21388	9.8129E-05	-3.4549	-0.0015851	-3.241	-0.001487	458.8011687410318	92.371	0.48853	92.23	91.965	92.454	-0.14131					18	11	2	0	0	0	0.027866	1	11358	11358		39.021	17.062	1	125370	+		26336	24621	18185	18223	30352	30352					0.12940146416133302
ILGLSPVLA	9	Unmodified	_ILGLSPVLA_					0	0	0			REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7879638671875	2	441.786579	881.558604	-0.30752	-0.00013586	3.5494	0.0015681	3.2418	0.0014322	441.7880301271591	42.766	0.87699	42.653	41.898	42.775	-0.11253					52	22	4	0	0	0	0.96121	1	3864	3864		28.254	1.4582	1	6257200	+		26337	31658	18186	18224	30353	30353					0.11308733942314575
ILGLSPVLAR	10	Unmodified	_ILGLSPVLAR_					0	0	0			REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8252563476562	2	519.837134	1037.65972	-1.0236	-0.00053209	1.1294	0.00058711	0.10584	5.502E-05	519.837424282978	81.239	0.49132	81.263	81.126	81.617	0.023911					12	6	3	0	0	0	0.03519	1	10048	10048		44.117	0	1	203640	+		26338	31658	18187	18225	30354	30354					0.14239185645033103
ILGLTGLYGF	10	Unmodified	_ILGLTGLYGF_					0	0	0		ENSG00000127774|ENST00000248378|EMC6	ENSG00000127774|ENST00000248378|EMC6	ENSG00000127774|ENST00000248378|EMC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.3031005859375	2	527.302593	1052.59063	-0.075704	-3.9919E-05	4.2645	0.0022487	4.1888	0.0022088	527.3048777539068	98.108	1.4566	97.942	97.397	98.853	-0.16521					71	34	3	0	0	0	1.0541	1	12152	12152		38.806	0.99462	1	571960			26339	4260	18188	18226	30355	30355					0.06644101625465737
ILGMFPLIF	9	Unmodified	_ILGMFPLIF_					0	0	0		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.314208984375	2	525.806457	1049.59836	0.21075	0.00011082	-2.3438	-0.0012324	-2.133	-0.0011215	525.8051185189848	101.98	0.099899	101.85	101.76	101.86	-0.12931					4	2	2	0	0	0	0.024389	1	12652	12652		29.842	0	1	19220			26340	7352	18189	18227	30356	30356					0.07554537621376767
ILGPEVSI	8	Unmodified	_ILGPEVSI_					0	0	0			REV__ENSG00000149289|ENST00000278590|ZC3H12C	REV__ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.57196044921875	2	414.247286	826.48002	-0.51247	-0.00021229	4.0151	0.0016632	3.5026	0.0014509	414.2494348404246	40.486	0.31394	40.509	40.349	40.663	0.023006					10	8	2	0	0	0	0.027866	1	3529	3529		46.766	4.292	1	34865	+		26341	24667	18190	18228	30357	30357					0.05983881637234845
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7816162109375	2	454.781828	907.549102	-0.020758	-9.4404E-06	-0.23903	-0.00010871	-0.25979	-0.00011815	454.7817094233022	41.424	0.72038	41.289	40.985	41.705	-0.13553					51	18	4	0	0	0	0.22754	1	3662	3662		85.359	19.556	1	1331700			26342	7204	18191	18229	30358	30358					0.09162965656810229
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7816467285156	2	454.781828	907.549102	-0.34498	-0.00015689	0.13542	6.1587E-05	-0.20956	-9.5306E-05	454.78181349131756	41.639	0.68169	41.412	41.159	41.841	-0.2278					39	17	3	0	0	0	0.29104	1	3679	3679		76.847	11.043	1	1446100			26343	7204	18191	18229	30359	30359					0.09162965656810229
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	454.781828	907.549102	0.62677	0.00028504	-1.0181	-0.00046302	-0.39135	-0.00017798	454.78139418313685	41.299	0.67188	41.299	41.051	41.722	0	-0.067679	-0.00068566	NaN	85.359	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	868600			26344	7204	18191	18229							0.09162965656810229
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.781828	907.549102	0.16571	7.5362E-05	-0.76891	-0.00034969	-0.6032	-0.00027432	454.7815846316948	41.465	0.6392	41.342	41.086	41.725	-0.12317	-0.024155	-0.00045899	NaN	85.359	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	734460			26345	7204	18191	18229							0.09162965656810229
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	454.781828	907.549102	0.24163	0.00010989	-0.29723	-0.00013517	-0.055593	-2.5283E-05	454.78157252313673	41.413	0.63509	41.436	41.182	41.818	0.023006	0.069597	-2.9962E-05	NaN	85.359	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	815750			26346	7204	18191	18229							0.09162965656810229
ILGPKPQGV	9	Unmodified	_ILGPKPQGV_					0	0	0		ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	ENSG00000164073|ENST00000641686|MFSD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	454.781828	907.549102	-0.2723	-0.00012384	-0.29743	-0.00013527	-0.56973	-0.0002591	454.7817127495032	41.651	0.71272	41.421	41.119	41.832	-0.23029	0.054295	-3.0148E-05	NaN	85.359	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474400			26347	7204	18191	18229							0.09162965656810229
ILGPPSLDPR	10	Unmodified	_ILGPPSLDPR_					0	0	0		ENST00000301454.8_1_19:6441086-6441584:-|nuORF	ENST00000301454.8_1_19:6441086-6441584:-|nuORF	ENST00000301454.8_1_19:6441086-6441584:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8167724609375	2	532.808574	1063.60259	-0.62286	-0.00033186	3.0707	0.0016361	2.4478	0.0013042	533.3095139172888	88.719	0.41939	88.548	88.338	88.757	-0.17054					11	9	2	0	0	0	0.03519	1	10798	10798		19.997	0	1	57069			26348	11929	18192	18230	30360	30360					0.07333718368636255
ILGPRQIW	8	Unmodified	_ILGPRQIW_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.248046875	2	491.795269	981.575986	0.072258	3.5536E-05	0.54823	0.00026962	0.62049	0.00030515	491.7954125994428	68.126	1.245	68.145	67.967	69.212	0.018913					46	32	2	0	0	0	0.027866	1	8132	8132		62.978	2.6845	1	256430	+		26349	29184	18193	18231	30361	30361					0.08446074267999393
ILGPSSINA	9	Unmodified	_ILGPSSINA_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7398376464844	2	436.247818	870.481082	-0.26641	-0.00011622	0.74523	0.0003251	0.47882	0.00020888	436.2481416410127	67.007	0.36999	66.725	66.588	66.958	-0.28148					13	8	2	0	0	0	0.023817	1	7975	7975		51.335	0	1	321600	+		26350	23162	18194	18232	30362	30362					0.04066096006135922
ILGPSSINA	9	Unmodified	_ILGPSSINA_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.7394714355469	2	436.247818	870.481082	0.047076	2.0537E-05	0.051485	2.246E-05	0.098561	4.2997E-05	436.24768804054276	66.689	0.38349	66.719	66.565	66.948	0.030106					13	8	2	0	0	0	0.023817	1	7880	7880		60.972	16.855	1	202730	+		26351	23162	18194	18232	30363	30363					0.04066096006135922
ILGPSVGPI	9	Unmodified	_ILGPSVGPI_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.3028259277344	2	426.763104	851.511654	-0.35297	-0.00015063	3.7165	0.0015861	3.3635	0.0014354	426.76455646597464	66.26	0.66654	66.046	65.712	66.378	-0.21327					38	16	4	0	0	0	0.024325	1	7646	7646		31.955	5.1588	1	756310	+		26352	22741	18195	18233	30364	30364					0.07995874391190227
ILGPSVGPI	9	Unmodified	_ILGPSVGPI_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.3026123046875	2	426.763104	851.511654	-0.075937	-3.2407E-05	3.368	0.0014374	3.2921	0.0014049	426.7644700294311	66.24	0.73094	65.995	65.691	66.422	-0.24517					38	18	3	0	0	0	0.024325	1	7620	7620		40.573	8.6178	1	789450	+		26353	22741	18195	18233	30365	30365					0.07995874391190227
ILGPSVGPI	9	Unmodified	_ILGPSVGPI_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	426.763104	851.511654	0.2612	0.00011147	3.1843	0.0013589	3.4455	0.0014704	426.7643769579412	66.031	0.50279	66.031	65.721	66.224	0	-0.013983	-0.00017952	NaN	31.955	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1420800	+		26354	22741	18195	18233							0.07995874391190227
ILGPSVGPI	9	Unmodified	_ILGPSVGPI_					0	0	0			REV__ENSG00000124177|ENST00000373233|CHD6	REV__ENSG00000124177|ENST00000373233|CHD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.763104	851.511654	-0.21623	-9.2278E-05	3.5887	0.0015315	3.3724	0.0014392	426.76454908335455	66.357	0.4632	66.075	65.788	66.251	-0.28148	0.030269	0.00016564	NaN	31.955	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429900	+		26355	22741	18195	18233							0.07995874391190227
ILGQLCSSV	9	Unmodified	_ILGQLCSSV_					0	0	0			REV__ENST00000494224.1_1_1:118461242-118461308:-|nuORF	REV__ENST00000494224.1_1_1:118461242-118461308:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.2685241699219	2	460.249503	918.484453	0.68202	0.0003139	-0.85971	-0.00039568	-0.17769	-8.178E-05	460.24895114337573	67.638	1.6027	67.382	66.87	68.472	-0.25516					59	38	2	0	0	0	0.024405	1	7788	7788		27.882	0	1	291950	+		26356	33777	18196	18234	30366	30366					0.021950227884985907
ILGQLCSSV	9	Unmodified	_ILGQLCSSV_					0	0	0			REV__ENST00000494224.1_1_1:118461242-118461308:-|nuORF	REV__ENST00000494224.1_1_1:118461242-118461308:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	460.249503	918.484453	0.13314	6.1275E-05	0.10716	4.9319E-05	0.24029	0.00011059	460.24938562628313	67.332	1.3947	67.332	66.552	67.947	0	-0.038913	0.00015848	NaN	58.782	86	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1019800	+		26357	33777	18196	18234							0.021950227884985907
ILGQLCSSV	9	Unmodified	_ILGQLCSSV_					0	0	0			REV__ENST00000494224.1_1_1:118461242-118461308:-|nuORF	REV__ENST00000494224.1_1_1:118461242-118461308:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	460.249503	918.484453	0.047953	2.207E-05	0.23524	0.00010827	0.28319	0.00013034	460.2494497846993	67.646	1.469	67.358	66.548	68.017	-0.28834	-0.013495	0.00027638	NaN	58.782	88	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1030500	+		26358	33777	18196	18234							0.021950227884985907
ILGQLLSDL	9	Unmodified	_ILGQLLSDL_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2915954589844	2	486.292225	970.569897	-0.9144	-0.00044467	0.17932	8.7202E-05	-0.73508	-0.00035747	486.292125161828	94.298	2.5614	94.304	93.096	95.657	0.0059814					95	60	4	0	0	0	0.11092	1	11929	11929		108.09	6.4868	1	1690300	+		26359	25445	18197	18235	30367	30367					0.08343511245811897
ILGQLPPL	8	Unmodified	_ILGQLPPL_					0	0	0		nc|ENSG00000188163|Q6J272-2|CIMIP2A;ENSG00000188163|ENST00000344774|FAM166A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	nc|ENSG00000188163|Q6J272-2|CIMIP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.7747497558594	2	425.773471	849.53239	0.67355	0.00028678	2.7876	0.0011869	3.4611	0.0014737	425.7745799755931	43.106	2.4421	43.136	42.759	45.201	0.030823					140	68	5	0	0	0	1.0572	1	3977	3977		28.254	6.5519	1	17718000			26360	9698	18198	18236	30368	30368					0.10160464770854105
ILGQMWPQ	8	Unmodified	_ILGQMWPQ_					0	0	0			REV__ENSG00000162366|ENST00000294338|PDZK1IP1	REV__ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7785339355469	2	486.752213	971.489873	-0.97215	-0.0004732	-3.1731	-0.0015445	-4.1452	-0.0020177	486.74960363161557	56.28	0.11375	56.378	56.321	56.435	0.097893					4	2	2	0	0	0	0.027866	1	6190	6190		47.916	19.661	1	46364	+		26361	25428	18199	18237	30369	30369					0.0029874637097009327
ILGRVQLQGRR	11	Unmodified	_ILGRVQLQGRR_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	648.4043579101562	2	648.40457	1294.79459	-0.17234	-0.00011174	2.0487	0.0013284	1.8764	0.0012166	648.405780927604	57.513	0.33401	57.608	57.429	57.763	0.09531					18	8	3	0	0	0	1.0238	1	6402	6402		31.53	9.5699	1	2056600	+		26362	37077	18200	18238	30370	30370					0.15898058839502482
ILGRVQLQGRR	11	Unmodified	_ILGRVQLQGRR_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	648.40457	1294.79459	0.93695	0.00060752	0.98	0.00063544	1.9169	0.001243	648.4052249364388	57.685	0.33659	57.685	57.459	57.796	0	0.019217	-0.00057845	NaN	31.53	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1736200	+		26363	37077	18200	18238							0.15898058839502482
ILGRVQLQGRR	11	Unmodified	_ILGRVQLQGRR_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	648.40457	1294.79459	1.0166	0.00065914	1.109	0.00071907	2.1255	0.0013782	648.4052690828898	57.879	0.39833	57.704	57.497	57.896	-0.1749	0.038308	-0.00041119	NaN	31.53	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2591900	+		26364	37077	18200	18238							0.15898058839502482
ILGRVQLQGRR	11	Unmodified	_ILGRVQLQGRR_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	648.40457	1294.79459	-0.17234	-0.00011174	2.0487	0.0013284	1.8764	0.0012166	648.405780927604	57.513	0.33401	57.608	57.429	57.763	0.09531	-0.057525	0.00080745	NaN	31.53	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2056600	+		26365	37077	18200	18238							0.15898058839502482
ILGSGKKV	8	Unmodified	_ILGSGKKV_					0	0	0		ENST00000322177.5_1_15:75249324-75249669:-|nuORF	ENST00000322177.5_1_15:75249324-75249669:-|nuORF	ENST00000322177.5_1_15:75249324-75249669:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	401.26226806640625	2	401.263271	800.511988	0.25207	0.00010115	-3.7878	-0.0015199	-3.5358	-0.0014188	401.2616516837039	85.433	1.2566	85.375	84.98	86.237	-0.057617					73	29	4	0	0	0	1.0574	1	10657	10657		19.36	6.4008	1	3809400			26366	12219	18201	18239	30371	30371					0.10375294111042876
ILGSGRRP	8	Unmodified	_ILGSGRRP_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.26123046875	2	428.261594	854.508634	-0.27209	-0.00011653	0.66798	0.00028607	0.39589	0.00016955	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0572	1	11185	11185		28.254	0	1	68116000			26367	5645	18202	18240	30372	30372					0.0755604405703707
ILGSHLTY	8	Unmodified	_ILGSHLTY_					0	0	0		ENSG00000180479|ENST00000451802|ZNF571	ENSG00000180479|ENST00000451802|ZNF571	ENSG00000180479|ENST00000451802|ZNF571	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2522277832031	2	452.25036	902.486168	0.40867	0.00018482	4.1522	0.0018778	4.5608	0.0020626	452.25215478079406	104.61	0.90871	104.45	104.18	105.09	-0.16484					58	30	2	0	0	0	0.78609	1	13016	13016		60.294	5.5176	1	1408700			26368	8981	18203	18241	30373	30373					0.03102399868748762
ILGSIIKKKGW	11	Unmodified	_ILGSIIKKKGW_					0	0	0		nc|ENSG00000169282|Q14722-2|KCNAB1;nc|ENSG00000169282|Q14722-3|KCNAB1;ENSG00000169282|ENST00000490337|KCNAB1	nc|ENSG00000169282|Q14722-2|KCNAB1	nc|ENSG00000169282|Q14722-2|KCNAB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.9015502929688	2	621.900266	1241.78598	0.31982	0.0001989	1.5039	0.00093526	1.8237	0.0011342	622.4027589150551	105.92	0.44003	105.92	105.73	106.17	-0.0013123					35	15	4	0	0	0	1.0521	1	13576	13576		24.519	1.9395	1	756240			26369	7922	18204	18242	30374	30374					0.1747569215033309
ILGTARSLVL	10	Unmodified	_ILGTARSLVL_					0	0	0			REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF	REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8345336914062	2	521.834591	1041.65463	0.36136	0.00018857	-0.80413	-0.00041962	-0.44277	-0.00023105	521.8340958344138	69.57	1.0639	69.277	68.896	69.96	-0.29292					79	26	4	0	0	0	0.64538	1	8372	8372		71.877	3.0906	1	4184400	+		26370	31303	18205	18243	30375	30375					0.13546881782417586
ILGTQLSQ	8	Unmodified	_ILGTQLSQ_					0	0	0			REV__ENST00000497815.5_1_7:101459310-101755188:+|nuORF	REV__ENST00000497815.5_1_7:101459310-101755188:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.23577880859375	2	430.247818	858.481082	-0.73682	-0.00031702	-0.8586	-0.00036941	-1.5954	-0.00068643	430.2474777389995	25.22	0.31075	25.22	25.052	25.363	0					10	7	2	0	0	0	0.027866	1	1188	1188		49.442	0	1	75763	+		26371	33860	18206	18244	30376	30376					0.04618096006140604
ILGTSATSLI	10	Unmodified	_ILGTSATSLI_					0	0	0			REV__ENSG00000181433|ENST00000370709|SAGE1	REV__ENSG00000181433|ENST00000370709|SAGE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7742919921875	2	488.289682	974.564812	-0.56538	-0.00027607	3.6241	0.0017696	3.0587	0.0014935	488.2915121053469	56.436	0.5809	56.272	55.879	56.459	-0.16431					18	15	2	0	0	0	0.03519	1	6211	6211		38.806	5.9937	1	176300	+		26372	27405	18207	18245	30377	30377					0.0765120738318501
ILGTTKNIIF	10	Unmodified	_ILGTTKNIIF_					0	0	0			REV__nc|ENSG00000150275|Q96QU1|PCDH15	REV__nc|ENSG00000150275|Q96QU1|PCDH15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3405151367188	2	560.342249	1118.66995	-0.38796	-0.00021739	-3.4302	-0.0019221	-3.8182	-0.0021395	560.3401809188904	101.1	1.8443	101.11	100.79	102.63	0.0090256					135	42	6	0	0	0	0.85955	1	12968	12968		56.721	9.0637	1	14349000	+		26373	36778	18208	18246	30378	30378					0.11535748579603933
ILGVCGVLLF	10	Unmodified	_ILGVCGVLLF_					0	0	0		PVRIG|p.S159C|1|0.15|ENSG00000213413|chr7:100220553-100220553|C/G|missense_variant	PVRIG|p.S159C|1|0.15|ENSG00000213413|chr7:100220553-100220553|C/G|missense_variant	PVRIG|p.S159C|1|0.15|ENSG00000213413|chr7:100220553-100220553|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8271484375	2	517.309364	1032.60417	-0.24483	-0.00012665	3.7544	0.0019422	3.5096	0.0018155	517.3111114077582	34.866	0.55869	34.659	34.485	35.043	-0.20696					19	13	3	0	0	0	0.03519	1	2626	2626		26.796	1.3459	1	116690			26374	19012	18209	18247	30379	30379					0.08917636133060114
ILGWHGAR	8	Unmodified	_ILGWHGAR_					0	0	0			REV__ENST00000264595.6_1_4:178363422-178363623:-|nuORF	REV__ENST00000264595.6_1_4:178363422-178363623:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.24609375	2	455.256311	908.49807	-0.36908	-0.00016802	-1.04	-0.00047349	-1.4091	-0.00064151	455.2558007900774	42.713	0.63923	42.487	42.035	42.675	-0.22597					23	16	2	0	0	0	0.027866	1	3786	3786		28.254	0	1	110390	+		26375	29722	18210	18248	30380	30380					0.04016061402614923
ILGYCIAVIS	10	Unmodified	_ILGYCIAVIS_					0	0	0			REV__ENSG00000171049|ENST00000340023|FPR2	REV__ENSG00000171049|ENST00000340023|FPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.3145141601562	2	526.296453	1050.57835	-0.15873	-8.354E-05	-1.7413	-0.00091646	-1.9001	-0.001	526.2958888627659	75.023	0.28704	74.764	74.577	74.864	-0.25887					10	6	2	0	0	0	0.03519	1	9171	9171		31.955	14.59	1	187000	+		26376	26534	18211	18249	30381	30381					0.055087418907760366
ILGYSVAVISM	11	Unmodified	_ILGYSVAVISM_					0	0	0			REV__ENSG00000171051|ENST00000304748|FPR1	REV__ENSG00000171051|ENST00000304748|FPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.2901000976562	2	576.820292	1151.62603	0.24535	0.00014152	-3.651	-0.002106	-3.4056	-0.0019644	576.8179462731686	59.657	0.4599	59.48	59.281	59.741	-0.1761					17	11	3	0	0	0	0.024732	1	6601	6601		32.812	3.6629	1	166770	+		26377	26535	18212	18250	30382	30382					0.05628396090969545
ILHAYLTHP	9	Unmodified	_ILHAYLTHP_					0	0	0			REV__ENSG00000158863|ENST00000289921|FHIP2B	REV__ENSG00000158863|ENST00000289921|FHIP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2930297851562	2	532.798009	1063.58147	-0.46628	-0.00024843	1.536	0.00081838	1.0697	0.00056995	532.7979449832795	65.316	1.4585	65.354	64.707	66.166	0.037384					64	39	3	0	0	0	0.024325	1	7611	7611		60.294	16.177	1	877110	+		26378	25224	18213	18251	30383	30383					0.052217530597772566
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7660522460938	2	520.766571	1039.51859	-0.78335	-0.00040794	0.059699	3.1089E-05	-0.72365	-0.00037685	520.7665767227601	47.481	3.8194	47.481	46.659	50.479	0					218	109	5	0	0	0	0.20304	3	4771	4747;4771;4823		88.643	8.9303	1	74814000			26379	5160	18214	18252	30384;30385;30386	30385					0.00041142481086353655
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7662963867188	2	520.766571	1039.51859	-0.46416	-0.00024172	-0.34831	-0.00018139	-0.81247	-0.00042311	520.7664167659216	47.498	3.4956	47.402	46.86	50.355	-0.096649					231	93	6	0	0	0	0.10076	2	4636	4636;4672		110.34	33.02	1	69514000			26380	5160	18214	18252	30387;30388	30387					0.00041142481086353655
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7661743164062	2	520.766571	1039.51859	-0.025376	-1.3215E-05	-0.85303	-0.00044423	-0.8784	-0.00045744	520.7661631309459	47.821	3.1046	47.545	47.194	50.299	-0.27598					242	83	6	0	0	0	0.15889	4	4677	4665;4677;4689;4713		97.473	15.168	1	68621000			26381	5160	18214	18252	30389;30390;30391;30392	30390					0.00041142481086353655
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7670288085938	2	520.766571	1039.51859	0.23425	0.00012199	-1.11	-0.00057806	-0.87576	-0.00045607	520.7660206360341	47.627	3.2351	47.44	46.93	50.165	-0.18684					241	86	6	0	0	0	0.10076	6	4683	4636;4647;4659;4671;4683;4708		110.34	29.979	1	70558000			26382	5160	18214	18252	30393;30394;30395;30396;30397;30398	30397					0.00041142481086353655
ILHEYKNLS	9	Unmodified	_ILHEYKNLS_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.3345336914062	2	558.806031	1115.59751	-0.7079	-0.00039558	0.92322	0.0005159	0.21532	0.00012032	558.8057111202221	48.675	0.53621	48.522	48.364	48.9	-0.15276					25	14	3	0	0	0	0.024495	1	5015	5015		26.693	6.6961	1	101770			26383	724	18215	18253	30399	30399					0.04433414506047484
ILHEYKNLS	9	Unmodified	_ILHEYKNLS_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.806031	1115.59751	-0.24459	-0.00013668	1.2297	0.00068714	0.98507	0.00055047	558.8058631397132	48.522	0.49907	48.589	48.265	48.764	0.066795	-0.089233	0.0054536	NaN	26.693	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105090			26384	724	18215	18253							0.04433414506047484
ILHFTGRGW	9	Unmodified	_ILHFTGRGW_					0	0	0		ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.7974853515625	2	543.795801	1085.57705	0.12692	6.9021E-05	-1.7731	-0.0009642	-1.6462	-0.00089518	543.7947945522822	72.101	1.1246	71.839	71.559	72.684	-0.26199					66	26	4	0	0	0	0.29158	1	8473	8473		76.774	9.4469	1	3883800			26385	16412	18216	18254	30400	30400					0.03768288636888428
ILHGDLYVD	9	Unmodified	_ILHGDLYVD_					0	0	0			REV__nc|ENSG00000008130|O95544-3|NADK	REV__nc|ENSG00000008130|O95544-3|NADK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3259887695312	2	522.771657	1043.52876	-0.88639	-0.00046338	-3.7661	-0.0019688	-4.6525	-0.0024322	522.7692575770977	82.174	0.5329	82.174	81.83	82.363	0					21	12	2	0	0	0	0.024487	1	10236	10236		24.203	0	1	130340	+		26386	19875	18217	18255	30401	30401					0.008737502063240754
ILHGSFTIY	9	Unmodified	_ILHGSFTIY_					0	0	0			REV__nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	REV__nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7830200195312	2	525.784567	1049.55458	-0.016827	-8.8472E-06	-4.1999	-0.0022082	-4.2167	-0.0022171	525.7824062473394	49.726	1.0136	49.621	49.259	50.273	-0.10558					90	26	6	0	0	0	0.60698	1	5039	5039		52.299	9.903	1	15556000	+		26387	23375	18218	18256	30402	30402					0.03178644448621526
ILHHLVNLL	9	Unmodified	_ILHHLVNLL_					0	0	0			REV__ENSG00000180934|ENST00000641900|OR56A1	REV__ENSG00000180934|ENST00000641900|OR56A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8143920898438	2	536.337301	1070.66005	-0.36442	-0.00019545	-4.4898	-0.0024081	-4.8542	-0.0026035	536.3351807743009	76.672	0.5312	76.684	76.285	76.817	0.0121					16	12	2	0	0	0	0.024517	1	9381	9381		26.796	0	1	96969	+		26388	27376	18219	18257	30403	30403					0.12754605364898453
ILHKKGGAV	9	Unmodified	_ILHKKGGAV_					0	0	0		LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant;nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.7951354980469	2	461.795269	921.575986	0.85056	0.00039278	-0.72389	-0.00033429	0.12667	5.8494E-05	461.79480167740695	18.378	0.59193	18.222	18.002	18.594	-0.15637					23	11	3	0	0	0	0.85329	1	304	304		35.618	3.6634	1	327950			26389	6802	18220	18258	30404	30404					0.11206074268000066
ILHKKGGAV	9	Unmodified	_ILHKKGGAV_					0	0	0		LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant;nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.7952575683594	2	461.795269	921.575986	3.1664	0.0014622	-2.9743	-0.0013735	0.19204	8.8682E-05	461.79375537068995	18.429	0.5994	18.186	17.974	18.573	-0.24256					28	11	4	0	0	0	0.78069	1	288	288		40.573	3.5441	1	312560			26390	6802	18220	18258	30405	30405					0.11206074268000066
ILHKLLCIW	9	Unmodified	_ILHKLLCIW_					0	0	0			REV__chr1:197122301-197122388|478|10.72|0.52|4.36|-|0|ASPM,ASPM|1	REV__chr1:197122301-197122388|478|10.72|0.52|4.36|-|0|ASPM,ASPM|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.8453369140625	2	569.843905	1137.67326	-1.5049	-0.00085754	4.3913	0.0025023	2.8864	0.0016448	569.8463155285247	38.492	1.0411	38.492	38.247	39.288	0					68	27	4	0	0	0	0.88411	1	3250	3250		33.516	1.5607	1	2787200	+		26391	19318	18221	18259	30406	30406					0.10992720152603397
ILHNNWNEQ	9	Unmodified	_ILHNNWNEQ_					0	0	0			REV__ENST00000541244.1_1_12:123519188-123560226:-|nuORF	REV__ENST00000541244.1_1_12:123519188-123560226:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.7958984375	2	584.280712	1166.54687	-0.099824	-5.8325E-05	3.6414	0.0021276	3.5416	0.0020693	584.282535389149	68.439	0.63711	68.209	68	68.637	-0.23047					35	15	3	0	0	0	0.024418	1	7909	7909		45.972	0	1	661070	+		26392	34765	18222	18260	30407	30407					-0.029741148189714295
ILHPDVQRR	9	Unmodified	_ILHPDVQRR_					0	0	0		nc|ENSG00000100197|P10635-2|CYP2D6;ENSG00000100197|ENST00000645361|CYP2D6	nc|ENSG00000100197|P10635-2|CYP2D6	nc|ENSG00000100197|P10635-2|CYP2D6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.329833984375	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.80003	1	11524	11524		39.253	4.1008	1	14972000			26393	2147	18223	18261	30408	30408					0.08550747585650242
ILHPDVQRR	9	Unmodified	_ILHPDVQRR_					0	0	0		nc|ENSG00000100197|P10635-2|CYP2D6;ENSG00000100197|ENST00000645361|CYP2D6	nc|ENSG00000100197|P10635-2|CYP2D6	nc|ENSG00000100197|P10635-2|CYP2D6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.330539	1132.64652	0.14889	8.447E-05	-1.4619	-0.0008294	-1.313	-0.00074493	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	0.67687	1	10921	10921		47.657	1.6851	1	5699400			26394	2147	18223	18261	30409	30409					0.08550747585650242
ILHPVSAIIS	10	Unmodified	_ILHPVSAIIS_					0	0	0		ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.3146362304688	2	525.321317	1048.62808	-0.31522	-0.00016559	1.3129	0.00068972	0.99772	0.00052412	525.3219703590644	78.018	0.63535	77.756	77.356	77.991	-0.26202					19	12	2	0	0	0	0.03519	1	9287	9287		21.96	7.8228	1	181780			26395	16291	18224	18262	30410	30410					0.1057119289109778
ILHRMLNTRSL	11	Unmodified	_ILHRMLNTRSL_					0	0	0			REV__ENST00000407690.5_1_22:26890128-26890167:-|nuORF	REV__ENST00000407690.5_1_22:26890128-26890167:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.9328308105469	3	451.930968	1352.77107	0.7506	0.00033922	3.1789	0.0014367	3.9295	0.0017759	451.9323062190874	96.976	2.291	96.984	95.564	97.855	0.0089111					165	52	5	0	0	0	1.0739	1	12330	12330		18.531	0.69791	1	646190	+		26396	31939	18225	18263	30411	30411					0.10879877010688688
ILHSLPVTV	9	Unmodified	_ILHSLPVTV_					0	0	0			REV__YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	REV__YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2521667480469	2	489.80276	977.590967	-0.67633	-0.00033127	0.39347	0.00019272	-0.28286	-0.00013855	489.8027458227481	65.041	0.36644	65.078	64.854	65.221	0.037376					17	9	2	0	0	0	0.024487	1	7590	7590		24.203	10.427	1	172100	+		26397	23681	18226	18264	30412	30412					0.10127521345339119
ILHSLRCLSK	10	Unmodified	_ILHSLRCLSK_					0	0	0			REV__ZNF436|p.F231L|1|0.44|ENSG00000125945|chr1:23362689-23362689|G/C|missense_variant	REV__ZNF436|p.F231L|1|0.44|ENSG00000125945|chr1:23362689-23362689|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.2827758789062	2	585.3448	1168.67505	0.37478	0.00021937	-3.3613	-0.0019675	-2.9865	-0.0017481	585.3429174869443	51.014	0.41669	50.902	50.712	51.129	-0.11163					17	10	2	0	0	0	0.03519	1	5244	5244		51.193	0	1	253610	+		26398	37806	18227	18265	30413	30413					0.09745729170572304
ILHSRLTN	8	Unmodified	_ILHSRLTN_					0	0	0			REV__ENST00000379070.3_1_20:5157275-5170877:+|nuORF	REV__ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.2796630859375	2	477.279983	952.545414	-1.0536	-0.00050287	1.2546	0.00059877	0.20094	9.5907E-05	477.2804348827213	37.525	0.43055	37.306	37.076	37.506	-0.2195					27	10	3	0	0	0	0.50717	1	3013	3013		84.916	13.62	1	1831600	+		26399	21212	18228	18266	30414	30414					0.0672429588292971
ILHSWSVVIV	10	Unmodified	_ILHSWSVVIV_					0	0	0			REV__ENST00000558063.5_1_15:52338061-52338148:+|nuORF	REV__ENST00000558063.5_1_15:52338061-52338148:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.306884765625	2	576.842416	1151.67028	-0.74895	-0.00043203	-0.076678	-4.4231E-05	-0.82563	-0.00047626	576.8426476440862	73.263	0.4972	72.998	72.681	73.178	-0.26479					15	11	2	0	0	0	0.03519	1	8594	8594		37.159	10.466	1	116840	+		26400	35086	18229	18267	30415	30415					0.10051168299469282
ILHTGENLY	9	Unmodified	_ILHTGENLY_					0	0	0		nc|ENSG00000196247|Q9UII5|ZNF107;ZNF107|p.C750Mfs*18|1|0.43|ENSG00000196247|chr7:64708548-64708549|-/A|frameshift_variant;ENSG00000196247|ENST00000620827|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2772216796875	2	530.277106	1058.53966	-0.441	-0.00023385	0.48154	0.00025535	0.040531	2.1493E-05	530.2771948294628	57.917	0.94466	57.727	57.148	58.092	-0.19017					72	24	5	0	0	0	0.35646	1	6345	6345		68.787	0	1	20667000			26401	9844	18230	18268	30416	30416					0.012731525806202626
ILHTGENLY	9	Unmodified	_ILHTGENLY_					0	0	0		nc|ENSG00000196247|Q9UII5|ZNF107;ZNF107|p.C750Mfs*18|1|0.43|ENSG00000196247|chr7:64708548-64708549|-/A|frameshift_variant;ENSG00000196247|ENST00000620827|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	nc|ENSG00000196247|Q9UII5|ZNF107	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2764892578125	2	530.277106	1058.53966	-0.11633	-6.1687E-05	0.63456	0.00033649	0.51823	0.0002748	530.277142079813	58.032	0.98711	57.799	57.237	58.224	-0.23363					70	24	5	0	0	0	0.18915	1	6345	6345		90.777	0	1	13451000			26402	9844	18230	18268	30417	30417					0.012731525806202626
ILHTTSRSL	9	Unmodified	_ILHTTSRSL_					0	0	0			REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.299072265625	2	514.298373	1026.58219	-0.36934	-0.00018995	0.18582	9.5565E-05	-0.18353	-9.4387E-05	514.2984210471764	95.192	0.68699	95.192	94.875	95.562	0					46	15	4	0	0	0	0.62163	1	12143	12143		51.335	0.14276	1	1249400	+		26403	22117	18231	18269	30418	30418					0.0699654770885445
ILHTTSRSL	9	Unmodified	_ILHTTSRSL_					0	0	0			REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	514.298373	1026.58219	0.092329	4.7485E-05	-0.28028	-0.00014415	-0.18795	-9.6661E-05	514.2981816905186	95.108	0.82266	95.112	94.651	95.474	0.0033722	-0.046511	-0.00028645	NaN	51.335	47	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1292300	+		26404	22117	18231	18269							0.0699654770885445
ILHVKKKKAL	10	Unmodified	_ILHVKKKKAL_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.410801	1176.80705	-0.57411	-0.00033839	0.41482	0.0002445	-0.15929	-9.3888E-05	589.4111160022597	93.08	0.25896	92.936	92.743	93.002	-0.1441					7	5	2	0	0	0	0.03519	1	11412	11412		15.642	1.5047	1	21879			26405	10063	18232	18270	30419	30419					0.2257170224984293
ILHVRDVTT	9	Unmodified	_ILHVRDVTT_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3046264648438	2	527.306198	1052.59784	-0.70856	-0.00037363	-1.751	-0.00092329	-2.4595	-0.0012969	527.3053897775626	97.897	0.98776	97.897	97.37	98.358	0					62	22	4	0	0	0	0.72875	1	12528	12528		44.117	0	1	615700			26406	7413	18233	18271	30420	30420					0.07364834225904815
ILHVRDVTT	9	Unmodified	_ILHVRDVTT_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3043823242188	2	527.306198	1052.59784	0.11826	6.2359E-05	-2.439	-0.0012861	-2.3208	-0.0012238	527.3049169576591	97.891	1.1971	97.902	97.283	98.48	0.010231					72	27	5	0	0	0	0.67308	1	12467	12467		47.916	1.9636	1	628790			26407	7413	18233	18271	30421	30421					0.07364834225904815
ILHYRFDKWTQ	11	Unmodified	_ILHYRFDKWTQ_					0	0	0			REV__ENST00000418543.7_1_19:12786482-12786566:+|nuORF	REV__ENST00000418543.7_1_19:12786482-12786566:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7376403808594	3	502.933254	1505.77793	0.075369	3.7905E-05	0.035205	1.7706E-05	0.11057	5.5611E-05	503.267422556634	36.223	0.17569	36.006	35.913	36.088	-0.21661					6	4	2	0	0	0	0.02484	1	2823	2823		5.1424	0	1	130540	+		26408	32119	18234	18272	30422	30422					0.045275131628841336
ILIASQRSSA	10	Unmodified	_ILIASQRSSA_					0	0	0		ENSG00000132938|ENST00000612955|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3035888671875	2	523.303655	1044.59276	0.47324	0.00024765	-0.96385	-0.00050438	-0.49061	-0.00025674	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	1.0781	1	10611	10611		35.618	4.0885	1	13836000			26409	4664	18235	18273	30423	30423					0.07224530363305348
ILIDKLGG	8	Unmodified	_ILIDKLGG_					0	0	0			REV__nc|ENSG00000075292|Q14966-4|ZNF638	REV__nc|ENSG00000075292|Q14966-4|ZNF638	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.7616882324219	2	414.763104	827.511654	0.11105	4.606E-05	-3.4788	-0.0014429	-3.3678	-0.0013968	414.7617867578987	110.25	0.53743	110.26	110.09	110.62	0.0059204					31	14	3	0	0	0	1.0133	1	13899	13899		35.201	1.6851	1	346340	+		26410	20543	18236	18274	30424	30424					0.09099874391188223
ILIDLCDEL	9	Unmodified	_ILIDLCDEL_					0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.7743530273438	2	523.775551	1045.53655	0.084237	4.4121E-05	-3.4743	-0.0018197	-3.39	-0.0017756	523.7736750521843	86.02	1.3162	86.02	85.5	86.816	0					52	30	2	0	0	0	0.14199	1	10792	10792		101.21	1.8366	1	3637600	+		26411	27187	18237	18275	30425	30425					0.015601414115963053
ILIDLCDEL	9	Unmodified	_ILIDLCDEL_					0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.7741088867188	2	523.775551	1045.53655	-0.34357	-0.00017995	-3.1292	-0.001639	-3.4728	-0.001819	523.7738359362282	85.97	1.5218	85.925	85.368	86.889	-0.045105					57	35	2	0	0	0	0.14199	2	10768	10768;10780		101.21	5.0211	1	3654400	+		26412	27187	18237	18275	30426;30427	30426					0.015601414115963053
ILIDQDLKPWL	11	Unmodified	_ILIDQDLKPWL_					0	0	0		nc|ENSG00000131044|Q3SXZ7-2|TTLL9;ENSG00000131044|ENST00000535842|TTLL9	nc|ENSG00000131044|Q3SXZ7-2|TTLL9	nc|ENSG00000131044|Q3SXZ7-2|TTLL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9328308105469	3	451.930739	1352.77039	1.0325	0.00046661	3.2242	0.0014571	4.2567	0.0019237	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0712	1	12253	12253		19.263	0.73163	1	1299700			26413	4489	18238	18276	30428	30428					0.1081136084260379
ILIDRSVPL	9	Unmodified	_ILIDRSVPL_					0	0	0		ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.3235473632812	2	513.321317	1024.62808	0.8563	0.00043956	3.1685	0.0016265	4.0248	0.002066	513.3227376101628	96.81	0.80267	96.687	96.396	97.198	-0.12305					40	17	3	0	0	0	0.77768	1	11982	11982		40.778	1.5253	1	452210			26414	16423	18239	18277	30429	30429					0.11675192891107145
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.833251953125	2	549.831517	1097.64848	0.053813	2.9588E-05	0.05579	3.0675E-05	0.1096	6.0263E-05	549.8314679099934	105.27	0.73823	105.27	105.02	105.76	0					35	19	2	0	0	0	0.016871	3	13522	13498;13508;13522		152.47	69.72	1	415550			26415	4748	18240	18278	30430;30431;30432	30432					0.10356363550909009
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.8325805664062	2	549.831517	1097.64848	-0.43179	-0.00023741	0.43459	0.00023895	0.002802	1.5406E-06	549.8317110257594	105.19	0.52906	105.19	104.96	105.49	0.00096893					25	16	2	0	0	0	0.033448	1	13457	13457		138.83	48.225	1	422930			26416	4748	18240	18278	30433	30433					0.10356363550909009
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.8321533203125	2	549.831517	1097.64848	-0.35935	-0.00019758	0.47914	0.00026344	0.11979	6.5862E-05	549.8317577848436	105.35	0.63524	105.35	105.09	105.73	-0.0015945					27	19	2	0	0	0	0.14024	4	13435	13425;13435;13447;13462		101.6	29.662	1	276640			26417	4748	18240	18278	30434;30435;30436;30437	30435					0.10356363550909009
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.8314819335938	2	549.831517	1097.64848	-0.0046436	-2.5532E-06	-0.063137	-3.4715E-05	-0.067781	-3.7268E-05	549.8314186511744	105.14	1.5776	105.02	104.74	106.32	-0.12444					108	51	4	0	0	0	0.013333	5	13082	13068;13075;13082;13091;13104		176.41	83.215	1	3935400			26418	4748	18240	18278	30438;30439;30440;30441;30442	30440					0.10356363550909009
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.8316650390625	2	549.831517	1097.64848	-0.80151	-0.0004407	0.85228	0.00046861	0.050764	2.7912E-05	549.8318600501541	105.18	1.5296	105.05	104.77	106.3	-0.13099					110	57	4	0	0	0	0.016871	6	13089	13082;13089;13096;13106;13117;13128		152.47	75.696	1	1367300			26419	4748	18240	18278	30443;30444;30445;30446;30447;30448	30444					0.10356363550909009
ILIDWLVQV	9	Unmodified	_ILIDWLVQV_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.83203125	2	549.831517	1097.64848	0.3278	0.00018024	-0.38318	-0.00021068	-0.05538	-3.045E-05	549.831298587792	105.26	1.1551	105.09	104.85	106	-0.16485					86	43	6	0	0	0	0.021872	3	13089	13081;13089;13101		148.04	67.588	1	2138500			26420	4748	18240	18278	30449;30450;30451	30450					0.10356363550909009
ILIFETVNK	9	Unmodified	_ILIFETVNK_					0	0	0			REV__ENSG00000221954|ENST00000335238|OR4C12	REV__ENSG00000221954|ENST00000335238|OR4C12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8628540039062	2	538.82115	1075.62775	-1.5359	-0.00082759	4.4218	0.0023825	2.8859	0.001555	538.8223998759472	80.242	0.33466	80.09	80.008	80.343	-0.15168					13	7	2	0	0	0	0.024427	1	9957	9957		51.335	20.832	1	83248	+		26421	28841	18241	18279	30452	30452					0.0929577317122039
ILIGASIVKV	10	Unmodified	_ILIGASIVKV_					0	0	0			REV__ENST00000478286.2_1_1:86852553-86852694:-|nuORF	REV__ENST00000478286.2_1_1:86852553-86852694:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8226318359375	2	506.841885	1011.66922	-0.79738	-0.00040415	0.18427	9.3395E-05	-0.61312	-0.00031075	506.84187282772916	60.413	0.63728	60.237	59.998	60.635	-0.1761					25	15	3	0	0	0	0.03519	1	6720	6720		77.318	32.94	1	303740	+		26422	33361	18242	18280	30453	30453					0.16384953930571555
ILIGITEP	8	Unmodified	_ILIGITEP_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J;nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J;ENST00000461241.1_1_22:31523357-31529733:+|nuORF	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.26190185546875	2	428.262936	854.51132	-0.84173	-0.00036048	-1.8293	-0.00078343	-2.671	-0.0011439	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0017	1	11408	11408		37.028	1.8278	1	86056000			26423	9412	18243	18281	30454	30454					0.07824454671322201
ILIHKKGEV	9	Unmodified	_ILIHKKGEV_					0	0	0			REV__nc|ENSG00000196091|Q00872-5|MYBPC1	REV__nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.2789916992188	2	518.829309	1035.64407	-0.6504	-0.00033745	-0.079024	-4.1E-05	-0.72943	-0.00037845	518.8291436982416	61.677	0.52665	61.677	61.414	61.941	0					24	13	2	0	0	0	0.024205	1	7175	7175		53.351	19.179	1	494560	+		26424	28125	18244	18282	30455	30455					0.12766899127996112
ILIIGIDDR	9	Unmodified	_ILIIGIDDR_					0	0	0			REV__ENSG00000128524|ENST00000249289|ATP6V1F	REV__ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.323486328125	2	514.310949	1026.60735	-0.97041	-0.00049909	0.44973	0.0002313	-0.52068	-0.00026779	514.3110420805194	74.292	0.63995	74.301	73.967	74.607	0.0096512					22	14	2	0	0	0	0.02435	1	8991	8991		60.972	3.1607	1	195220	+		26425	22988	18245	18283	30456	30456					0.09510602511409161
ILIIREQSM	9	Oxidation (M)	_ILIIREQSM(Oxidation (M))_		ILIIREQSM(1)		ILIIREQSM(99)	0	0	1			REV__ENST00000473805.5_1_1:52289395-52291006:-|nuORF	REV__ENST00000473805.5_1_1:52289395-52291006:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2169189453125	2	559.815541	1117.61653	-0.53965	-0.0003021	-0.19903	-0.00011142	-0.73867	-0.00041352	559.8152078969497	43.681	0.52098	43.576	43.296	43.817	-0.10468					22	13	2	0	0	0	0.018452	1	4058	4058		98.629	13.714	1	513440	+		26426	33255	18246	18284	30457	30457		909			0.06242627805431766
ILIKAPPVK	9	Unmodified	_ILIKAPPVK_					0	0	0			REV__ENSG00000112992|ENST00000344920|NNT	REV__ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7922668457031	2	489.839146	977.663738	-0.51305	-0.00025131	0.57708	0.00028267	0.064029	3.1364E-05	489.83940844484823	61.016	0.44509	61.087	60.831	61.276	0.071129					15	11	2	0	0	0	0.024506	1	6942	6942		10.866	4.13	1	72552	+		26427	22035	18247	18285	30458	30458					0.17401275138752226
ILIKATYENF	10	Unmodified	_ILIKATYENF_					0	0	0		LAMA2|p.G1346E|1|0.52|ENSG00000196569|chr6:129316150-129316150|G/A|missense_variant	LAMA2|p.G1346E|1|0.52|ENSG00000196569|chr6:129316150-129316150|G/A|missense_variant	LAMA2|p.G1346E|1|0.52|ENSG00000196569|chr6:129316150-129316150|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.5600891113281	3	404.560535	1210.65977	-1.0221	-0.00041351	-1.3046	-0.00052779	-2.3267	-0.0009413	404.5600554460574	33.263	0.99211	33.097	32.76	33.752	-0.16565					86	24	6	0	0	0	1.1161	1	2375	2375		30.569	2.4874	1	10407000			26428	17909	18248	18286	30459	30459					0.06287140854374229
ILIKQTRFT	9	Unmodified	_ILIKQTRFT_					0	0	0		ENST00000263228.3_1_9:33920018-33920222:+|nuORF	ENST00000263228.3_1_9:33920018-33920222:+|nuORF	ENST00000263228.3_1_9:33920018-33920222:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3487548828125	2	560.347866	1118.68118	0.50297	0.00028184	2.205	0.0012356	2.708	0.0015174	560.3490952765827	106	0.36078	106	105.82	106.18	0					27	16	2	0	0	0	0.98128	1	13610	13610		24.203	1.1603	1	122880			26429	11525	18249	18287	30460	30460					0.1265857067376146
ILILFIAVC	9	Unmodified	_ILILFIAVC_					0	0	0			REV__ENSG00000181903|ENST00000314259|OR4C6	REV__ENSG00000181903|ENST00000314259|OR4C6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.814208984375	2	502.814282	1003.61401	0.45345	0.000228	-1.7969	-0.00090349	-1.3434	-0.00067549	502.8134358247894	96.092	3.0449	96.098	95.307	98.352	0.0065079					205	70	6	0	0	0	0.93795	1	12289	12289		29.842	0	1	17656000	+		26430	27436	18250	18288	30461	30461					0.11234824138432487
ILILFIAVC	9	Unmodified	_ILILFIAVC_					0	0	0			REV__ENSG00000181903|ENST00000314259|OR4C6	REV__ENSG00000181903|ENST00000314259|OR4C6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.8138427734375	2	502.814282	1003.61401	0.69855	0.00035124	-1.8603	-0.00093537	-1.1617	-0.00058413	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	0.99355	1	11944	11944		21.702	0.7554	1	14776000	+		26431	27436	18250	18288	30462	30462					0.11234824138432487
ILILIPATDL	10	Unmodified	_ILILIPATDL_					0	0	0			REV__nc|ENSG00000009765|Q6PHW0-7|IYD	REV__nc|ENSG00000009765|Q6PHW0-7|IYD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.3031616210938	2	541.347	1080.67945	-1.5333	-0.00083005	-2.1545	-0.0011663	-3.6878	-0.0019964	541.345876042113	47.573	0.68746	47.632	47.144	47.831	0.059097					40	20	3	0	0	0	0.03519	1	4649	4649		29.15	0	1	674830	+		26432	19896	18251	18289	30463	30463					0.1423351686512433
ILINKPER	8	Unmodified	_ILINKPER_					0	0	0		nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5	nc|ENSG00000123243|Q86UX2-3|ITIH5	nc|ENSG00000123243|Q86UX2-3|ITIH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.8061828613281	2	491.805834	981.597115	0.55785	0.00027435	-0.61992	-0.00030488	-0.062066	-3.0524E-05	491.80538998625923	18.936	0.44435	18.732	18.51	18.954	-0.20371					18	8	3	0	0	0	0.80469	1	364	364		58.782	3.2778	1	221010			26433	3966	18252	18290	30464	30464					0.10558039576847023
ILIPSFKYF	9	Unmodified	_ILIPSFKYF_					0	0	0			REV__ENSG00000104142|ENST00000220509|VPS18	REV__ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7642822265625	2	564.328611	1126.64267	-0.44473	-0.00025097	-3.4288	-0.001935	-3.8735	-0.0021859	564.3269246368834	76.911	0.50085	76.742	76.439	76.939	-0.16853					25	11	3	0	0	0	0.024325	1	9111	9111		24.203	2.2429	1	352020	+		26434	21422	18253	18291	30465	30465					0.08441265039232348
ILIQEQLS	8	Unmodified	_ILIQEQLS_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3128967285156	2	472.276575	942.538597	-0.67078	-0.0003168	0.33896	0.00016008	-0.33183	-0.00015671	472.2766558979661	44.773	0.50535	44.674	44.472	44.977	-0.099445					22	12	3	0	0	0	0.027866	1	4228	4228		115.46	0	1	163690			26435	917	18254	18292	30466	30466					0.06502938211713172
ILIQFLPLT	9	Unmodified	_ILIQFLPLT_					0	0	0			REV__ENST00000587491.5_1_17:75207779-75210102:+|nuORF	REV__ENST00000587491.5_1_17:75207779-75210102:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3314819335938	2	529.336436	1056.65832	0.43234	0.00022885	-2.5997	-0.0013761	-2.1674	-0.0011473	529.3351969364984	79.7	0.4174	79.454	79.236	79.654	-0.2465					17	9	2	0	0	0	0.024523	1	9497	9497		21.96	1.4781	1	99909	+		26436	35628	18255	18293	30467	30467					0.13225551556274695
ILIRRKRSVFF	11	Unmodified	_ILIRRKRSVFF_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7933044433594	3	478.973384	1433.89832	-0.14429	-6.9111E-05	2.8094	0.0013456	2.6651	0.0012765	478.97462201849925	45.625	1.7125	45.669	44.688	46.4	0.04388					121	49	3	0	0	0	0.024813	1	4392	4392		10.104	0	1	618980	+		26437	25494	18256	18294	30468	30468					0.19872965947138255
ILISEPQI	8	Unmodified	_ILISEPQI_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.26495361328125	2	456.773668	911.532783	0.35424	0.00016181	0.43887	0.00020046	0.79311	0.00036227	456.77211315245955	94.524	0.58521	94.402	94.099	94.685	-0.12215					21	13	2	0	0	0	0.027866	1	11628	11628		40.573	15.122	1	110180			26438	9426	18257	18295	30469	30469					0.07347839700048553
ILISLWVE	8	Unmodified	_ILISLWVE_					0	0	0		nc|ENSG00000109738|P48167-2|GLRB;ENSG00000109738|ENST00000264428|GLRB	nc|ENSG00000109738|P48167-2|GLRB	nc|ENSG00000109738|P48167-2|GLRB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7737121582031	2	486.791861	971.569169	-0.23203	-0.00011295	-3.9798	-0.0019373	-4.2118	-0.0020503	486.7897579010862	27.007	0.72189	26.851	26.544	27.266	-0.15664					31	16	3	0	0	0	0.027866	1	1483	1483		33.516	1.5607	1	289510			26439	2993	18258	18296	30470	30470					0.08224716596760118
ILISQIIGL	9	Unmodified	_ILISQIIGL_					0	0	0		nc|ENSG00000163581|P11168-2|SLC2A2;ENSG00000163581|ENST00000314251|SLC2A2	nc|ENSG00000163581|P11168-2|SLC2A2	nc|ENSG00000163581|P11168-2|SLC2A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2916259765625	2	485.320786	968.627018	-0.19533	-9.4797E-05	1.8367	0.00089141	1.6414	0.00079661	485.3221071680732	94.695	0.94519	94.695	94.362	95.307	0					28	21	2	0	0	0	0.024541	1	12005	12005		23.042	6.5693	1	51287			26440	7110	18259	18297	30471	30471					0.1414497852219938
ILISQIIGL	9	Unmodified	_ILISQIIGL_					0	0	0		nc|ENSG00000163581|P11168-2|SLC2A2;ENSG00000163581|ENST00000314251|SLC2A2	nc|ENSG00000163581|P11168-2|SLC2A2	nc|ENSG00000163581|P11168-2|SLC2A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.320786	968.627018	-0.1063	-5.159E-05	-0.19779	-9.5992E-05	-0.30409	-0.00014758	485.3204194044809	94.855	0.56502	94.858	94.392	94.957	0.0033798	0.081582	-0.00068397	NaN	16.473	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55079			26441	7110	18259	18297							0.1414497852219938
ILITIIRTL	9	Unmodified	_ILITIIRTL_					0	0	0		TAS2R16|p.G249R|1|0.24|ENSG00000128519|chr7:122994890-122994890|C/G|missense_variant	TAS2R16|p.G249R|1|0.24|ENSG00000128519|chr7:122994890-122994890|C/G|missense_variant	TAS2R16|p.G249R|1|0.24|ENSG00000128519|chr7:122994890-122994890|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2727661132812	2	528.362985	1054.71142	-0.64936	-0.0003431	-3.5669	-0.0018846	-4.2163	-0.0022277	528.3614665914768	91.952	0.36371	91.944	91.795	92.159	-0.0082932					10	8	2	0	0	0	0.024418	1	11651	11651		30.318	5.7985	1	73576			26442	38055	18260	18298	30472	30472					0.18624929338966467
ILITKCQTV	9	Unmodified	_ILITKCQTV_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8037109375	2	509.801903	1017.58925	0.52857	0.00026947	3.026	0.0015427	3.5546	0.0018121	509.8032727891544	98.163	1.089	98.161	97.813	98.902	-0.0020752					57	25	4	0	0	0	0.80658	1	12455	12455		38.806	3.6054	1	775880			26443	8336	18261	18299	30473	30473					0.08116144265056846
ILITLAEN	8	Unmodified	_ILITLAEN_					0	0	0		ENST00000394586.6_1_14:66028378-66028441:+|nuORF	ENST00000394586.6_1_14:66028378-66028441:+|nuORF	ENST00000394586.6_1_14:66028378-66028441:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.7646789550781	2	443.765843	885.517133	-0.64187	-0.00028484	-2.5366	-0.0011257	-3.1785	-0.0014105	443.76473269848924	92.004	1.1105	92.004	91.641	92.751	0					55	26	4	0	0	0	1.0574	1	11664	11664		26.796	0	1	1175400			26444	13492	18262	18300	30474	30474					0.06979553182998188
ILITVLPIA	9	Unmodified	_ILITVLPIA_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.82598876953125	2	476.825704	951.636855	1.5122	0.00072105	-1.3693	-0.00065293	0.14286	6.8119E-05	476.82501575324966	106.21	0.38264	106.21	106.01	106.39	0					27	16	2	0	0	0	0.90698	1	13639	13639		31.955	0	1	134680	+		26445	23986	18263	18301	30475	30475					0.15910166527555702
ILIVWLADQ	9	Unmodified	_ILIVWLADQ_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2366333007812	2	535.815867	1069.61718	-0.774	-0.00041472	1.4455	0.00077451	0.67148	0.00035979	536.3192013585336	69.368	0.41161	69.146	68.937	69.348	-0.22245					13	9	2	0	0	0	0.024427	1	8051	8051		42.396	9.5837	1	84215			26446	9097	18264	18302	30476	30476					0.08515790516776178
ILKAHGKS	8	Unmodified	_ILKAHGKS_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;ENST00000471217.5_1_10:93716996-93718971:+|nuORF;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000095564|ENST00000265990|BTAF1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.2660217285156	2	427.266345	852.518136	-0.4147	-0.00017719	0.79585	0.00034004	0.38115	0.00016285	427.26653747023056	43.572	0.80826	43.335	42.989	43.797	-0.23737					50	21	3	0	0	0	1.0106	1	4002	4002		35.618	2.1027	1	3854000			26447	2029;13827	18265	18303	30477	30477					0.08597812342566158
ILKCQVPLHFR	11	Unmodified	_ILKCQVPLHFR_					0	0	0		ENST00000337014.10_2_17:80376485-80377700:+|nuORF	ENST00000337014.10_2_17:80376485-80377700:+|nuORF	ENST00000337014.10_2_17:80376485-80377700:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.9329833984375	3	451.932309	1352.7751	0.5373	0.00024282	0.24261	0.00010964	0.77991	0.00035247	451.9323503655758	98.697	1.9732	98.697	97.898	99.871	0					179	45	5	0	0	0	1.0592	1	12688	12688		22.562	2.9347	1	1528000			26448	12413	18266	18304	30478	30478					0.11281966504361662
ILKDPVRW	8	Unmodified	_ILKDPVRW_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.7789916992188	2	513.808377	1025.6022	0.18149	9.3251E-05	-1.725	-0.00088633	-1.5435	-0.00079307	513.807691936719	75.465	0.63644	75.29	74.986	75.622	-0.17548					29	15	3	0	0	0	0.027866	1	8938	8938		53.351	7.3995	1	853600			26449	7085	18267	18305	30479	30479					0.0904234343945518
ILKEEEPLL	9	Unmodified	_ILKEEEPLL_					0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2928466796875	2	542.31844	1082.62233	-0.27187	-0.00014744	0.14293	7.7512E-05	-0.12894	-6.9928E-05	542.3177991572431	39.939	0.88944	39.939	39.391	40.281	0					38	24	2	0	0	0	0.024205	1	3389	3389		73.975	0	1	350430	+		26450	23058	18268	18306	30480	30480					0.08432049588759583
ILKEEEPLL	9	Unmodified	_ILKEEEPLL_					0	0	0			REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	REV__nc|ENSG00000129675|Q15052-2|ARHGEF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.2935180664062	2	542.31844	1082.62233	-1.4604	-0.000792	0.11337	6.1484E-05	-1.347	-0.00073052	542.3184189088117	40.381	0.78641	40.404	39.741	40.527	0.023006					34	21	2	0	0	0	0.024205	1	3389	3389		63.306	0	1	383310	+		26451	23058	18268	18306	30481	30481					0.08432049588759583
ILKEKLVILKN	11	Unmodified	_ILKEKLVILKN_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.8821105957031	3	437.630513	1309.86971	-0.43558	-0.00019062	-0.11379	-4.98E-05	-0.54937	-0.00024042	437.6303921264881	39.525	0.11423	39.361	39.265	39.379	-0.16458					4	2	2	0	0	0	0.02476	1	3358	3358		38.714	15.336	1	96497	+		26452	34459	18269	18307	30482	30482					0.22716803527350748
ILKELENP	8	Unmodified	_ILKELENP_					0	0	0			REV__TBC1D12-HELLS|1|fusion	REV__TBC1D12-HELLS|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7901916503906	2	478.276575	954.538597	0.61212	0.00029276	0.3431	0.0001641	0.95522	0.00045686	478.27607309957824	53.841	1.1257	53.841	53.16	54.285	0					88	31	5	0	0	0	0.027866	1	5789	5789		37.159	8.0096	1	1590200	+		26453	37677	18270	18308	30483	30483					0.0595093821170849
ILKERTCTM	9	Unmodified	_ILKERTCTM_					0	0	0			REV__SLC12A7|p.W981C|1|0.05|ENSG00000113504|chr5:1057554-1057554|C/A|missense_variant	REV__SLC12A7|p.W981C|1|0.05|ENSG00000113504|chr5:1057554-1057554|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.7779541015625	2	547.788469	1093.56239	1.0651	0.00058343	2.7313	0.0014962	3.7964	0.0020796	547.7900589219471	63.706	0.86008	63.76	63.41	64.27	0.054104					60	23	4	0	0	0	0.024381	1	7466	7466		45.952	0	1	4183800	+		26454	37490	18271	18309	30484	30484					0.019347123822171852
ILKEVNAGFV	10	Unmodified	_ILKEVNAGFV_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167114257812	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.089	1	11414	11414		34.173	2.2177	1	11705000	+		26455	19851	18272	18310	30485	30485					0.08222889028479585
ILKFPHSA	8	Unmodified	_ILKFPHSA_					0	0	0		ENST00000481798.1_1_3:40499446-40503006:+|nuORF;ENSG00000188846|ENST00000396203|RPL14	ENST00000481798.1_1_3:40499446-40503006:+|nuORF	ENST00000481798.1_1_3:40499446-40503006:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.76776123046875	2	456.76872	911.522887	-0.26482	-0.00012096	-1.0268	-0.000469	-1.2916	-0.00058996	456.76663130826694	32.741	0.76154	32.576	32.276	33.038	-0.16539					55	18	4	0	0	0	0.59392	1	2274	2274		76.847	5.5509	1	1545700			26456	9760	18273	18311	30486	30486					0.06358696485324344
ILKFTQHW	8	Unmodified	_ILKFTQHW_					0	0	0		ENST00000429442.6_1_8:135602540-135612746:-|nuORF	ENST00000429442.6_1_8:135602540-135612746:-|nuORF	ENST00000429442.6_1_8:135602540-135612746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3413696289062	2	536.800552	1071.58655	-0.73659	-0.0003954	-4.1132	-0.002208	-4.8498	-0.0026034	536.7984329520674	50.561	0.90376	50.561	50.274	51.178	0					86	25	4	0	0	0	0.027866	1	5308	5308		63.306	22.734	1	4126700			26457	14148	18274	18312	30487	30487					0.05362056922399461
ILKGGSHRI	9	Unmodified	_ILKGGSHRI_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.8034362792969	2	490.803626	979.592698	-1.0566	-0.0005186	0.58221	0.00028575	-0.47443	-0.00023285	490.8039011368712	35.425	0.97058	35.403	35.013	35.984	-0.021767					93	25	5	0	0	0	0.70186	1	2710	2710		45.952	3.4775	1	4431600			26458	8174	18275	18313	30488	30488					0.10208575153933452
ILKGGSHRI	9	Unmodified	_ILKGGSHRI_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.80316162109375	2	490.803626	979.592698	-0.63737	-0.00031282	-0.015559	-7.6362E-06	-0.65293	-0.00032046	490.8036342615088	35.494	1.1527	35.538	35.12	36.273	0.04406					106	30	6	0	0	0	0.72875	2	2699	2665;2699		44.117	3.5442	1	4559600			26459	8174	18275	18313	30489;30490	30490					0.10208575153933452
ILKGILTK	8	Unmodified	_ILKGILTK_					0	0	0		ENSG00000116882|ENST00000325945|HAO2;nc|ENSG00000116882|Q9NYQ3-2|HAO2	ENSG00000116882|ENST00000325945|HAO2	ENSG00000116882|ENST00000325945|HAO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.2873840332031	2	443.310221	884.605889	-0.22709	-0.00010067	0.063834	2.8298E-05	-0.16326	-7.2373E-05	443.31010479749824	35.318	0.4659	35.131	34.873	35.339	-0.18675					17	11	2	0	0	0	0.027866	1	2676	2676		9.1829	0	1	122020			26460	3588	18276	18314	30491	30491					0.15897013213304945
ILKGLIMKL	9	Unmodified	_ILKGLIMKL_					0	0	0		ENST00000361804.4_1_10:112356281-112357923:+|nuORF	ENST00000361804.4_1_10:112356281-112357923:+|nuORF	ENST00000361804.4_1_10:112356281-112357923:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.802978515625	2	514.848656	1027.68276	0.0487	2.5073E-05	-1.6389	-0.0008438	-1.5902	-0.00081873	514.8468167536141	59.798	0.22271	59.597	59.538	59.761	-0.20016					8	5	2	0	0	0	0.024535	1	6814	6814		18.324	3.6603	1	160100			26461	12806	18277	18315	30492	30492					0.17002488438151886
ILKILCDI	8	Unmodified	_ILKILCDI_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2723388671875	2	465.788264	929.561975	1.5528	0.00072328	2.4412	0.0011371	3.994	0.0018603	465.7892192200973	36.512	0.59999	36.314	36.016	36.616	-0.19829					29	14	3	0	0	0	0.027866	1	2808	2808		19.36	11.129	1	616590			26462	9339	18278	18316	30493	30493					0.09437660724665875
ILKIPSAS	8	Unmodified	_ILKIPSAS_					0	0	0		ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7614440917969	2	414.763104	827.511654	-0.11281	-4.6791E-05	-2.8477	-0.0011811	-2.9605	-0.0012279	414.7618481739228	110.56	0.5822	110.43	110.11	110.69	-0.12524					39	18	3	0	0	0	1.0574	1	13589	13589		25.45	3.7478	1	182020			26463	8898	18279	18317	30494	30494					0.09099874391176854
ILKITKVKF	9	Unmodified	_ILKITKVKF_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.281982421875	2	545.373352	1088.73215	0.095826	5.2261E-05	-4.3536	-0.0023744	-4.2578	-0.0023221	545.3712251590366	50.94	0.26091	50.759	50.61	50.87	-0.18071					10	6	3	0	0	0	0.024541	1	5199	5199		18.324	2.6826	1	175590			26464	5254	18280	18318	30495	30495					0.1913351971859356
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	401.2620544433594	2	401.263271	800.511988	0.25207	0.00010115	-3.7878	-0.0015199	-3.5358	-0.0014188	401.2616516837039	85.433	1.2566	85.375	84.98	86.237	-0.057617					73	29	4	0	0	0	1.0574	1	10690	10690		26.796	2.5934	1	3809400	+		26465	28132	18281	18319	30496	30496					0.10375294111031508
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.2619323730469	2	401.263271	800.511988	0.074199	2.9773E-05	-3.4444	-0.0013821	-3.3702	-0.0013523	401.26182084106796	85.549	0.80428	85.412	85.07	85.875	-0.13753					44	18	3	0	0	0	1.0574	1	10365	10365		18.324	0.95945	1	868160	+		26466	28132	18281	18319	30497	30497					0.10375294111031508
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	401.263271	800.511988	2.2828	0.00091599	-5.9678	-0.0023947	-3.6851	-0.0014787	401.26077542002935	85.314	1.2124	85.314	84.958	86.171	0	-0.050399	-0.0010722	NaN	26.796	74	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3019400	+		26467	28132	18281	18319							0.10375294111031508
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	401.263271	800.511988	1.9676	0.00078951	-5.5044	-0.0022087	-3.5369	-0.0014192	401.26094433919764	85.336	1.0797	85.362	84.995	86.074	0.025536	-0.0030862	-0.00070029	NaN	26.796	64	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211700	+		26468	28132	18281	18319							0.10375294111031508
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	401.263271	800.511988	1.0321	0.00041416	-4.5683	-0.0018331	-3.5361	-0.0014189	401.2613242248394	85.53	1.1919	85.335	84.967	86.159	-0.19508	-0.03003	5.0983E-05	NaN	26.796	69	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2117200	+		26469	28132	18281	18319							0.10375294111031508
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	401.263271	800.511988	1.8512	0.00074283	-5.2963	-0.0021252	-3.4451	-0.0013824	401.261041754064	85.54	1.2377	85.391	84.989	86.227	-0.14967	0.026007	-0.0005333	NaN	26.796	62	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1491300	+		26470	28132	18281	18319							0.10375294111031508
ILKKAVGH	8	Unmodified	_ILKKAVGH_					0	0	0		nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	nc|ENSG00000010165|Q8N6R0-2|METTL13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.25640869140625	2	433.284537	864.554522	0.014284	6.1889E-06	-0.29003	-0.00012567	-0.27575	-0.00011948	433.28432426356557	44.396	0.68291	44.433	43.998	44.681	0.036903					26	19	2	0	0	0	0.027866	1	4140	4140		13.775	0	1	152500			26471	870	18282	18320	30498	30498					0.11682689239273714
ILKKKEEV	8	Unmodified	_ILKKKEEV_					0	0	0			REV__ENSG00000149488|ENST00000358864|TMC2	REV__ENSG00000149488|ENST00000358864|TMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.8157043457031	2	493.815867	985.617182	-0.2004	-9.8961E-05	-0.1741	-8.5974E-05	-0.3745	-0.00018494	493.8157074069368	20.784	0.87308	20.616	20.345	21.219	-0.16774					44	17	4	0	0	0	0.38451	2	593	593;604		99.375	6.1795	1	1589200	+		26472	24681	18283	18321	30499;30500	30499					0.12379790516808953
ILKKKEEV	8	Unmodified	_ILKKKEEV_					0	0	0			REV__ENSG00000149488|ENST00000358864|TMC2	REV__ENSG00000149488|ENST00000358864|TMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.8155212402344	2	493.815867	985.617182	0.5731	0.00028301	-0.9635	-0.00047579	-0.3904	-0.00019279	493.8153233454757	20.901	1.0293	20.705	20.385	21.415	-0.19577					49	20	5	0	0	0	0.56592	1	597	597		79.451	2.6769	1	1458100	+		26473	24681	18283	18321	30501	30501					0.12379790516808953
ILKKKEEV	8	Unmodified	_ILKKKEEV_					0	0	0			REV__ENSG00000149488|ENST00000358864|TMC2	REV__ENSG00000149488|ENST00000358864|TMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.81549072265625	2	493.815867	985.617182	-0.81805	-0.00040397	0.37671	0.00018602	-0.44134	-0.00021794	493.8159769780723	20.961	0.79062	20.748	20.475	21.266	-0.2128					44	15	4	0	0	0	0.38451	1	585	585		99.375	11.621	1	1563700	+		26474	24681	18283	18321	30502	30502					0.12379790516808953
ILKKKEEV	8	Unmodified	_ILKKKEEV_					0	0	0			REV__ENSG00000149488|ENST00000358864|TMC2	REV__ENSG00000149488|ENST00000358864|TMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.728515625	2	493.815867	985.617182	0.35544	0.00017552	-1.2425	-0.00061358	-0.88708	-0.00043806	493.8155560966711	63.702	0.36153	63.443	63.313	63.675	-0.25824					14	9	2	0	0	0	0.027866	1	7176	7176		30.504	0	1	126120	+		26475	24681	18283	18321	30503	30503					0.12379790516808953
ILKKRELKKK	10	Unmodified	_ILKKRELKKK_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2621765136719	3	428.634368	1282.88128	0.14746	6.3205E-05	-2.6105	-0.001119	-2.4631	-0.0010558	428.9669591714716	90.093	0.19669	90.076	89.919	90.116	-0.016708					9	4	3	0	0	0	0.03519	1	11331	11331		12.207	3.9716	1	54378	+		26476	24990	18284	18322	30504	30504					0.2511504534134019
ILKKSSHAV	9	Unmodified	_ILKKSSHAV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ATXN10-TUBGCP6|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.80596923828125	2	491.805834	981.597115	0.12804	6.2971E-05	-0.12061	-5.9318E-05	0.0074287	3.6535E-06	491.80560009860005	18.874	0.54376	18.717	18.495	19.039	-0.15637					23	10	3	0	0	0	0.67687	1	366	366		47.657	0	1	263600			26477	165;4434	18285	18323	30505	30505					0.10558039576847023
ILKKSSHAV	9	Unmodified	_ILKKSSHAV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ATXN10-TUBGCP6|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.80621337890625	2	491.805834	981.597115	0.55785	0.00027435	-0.61992	-0.00030488	-0.062066	-3.0524E-05	491.80538998625923	18.936	0.44435	18.732	18.51	18.954	-0.20371					18	8	3	0	0	0	0.29158	1	355	355		76.774	21.27	1	221010			26478	165;4434	18285	18323	30506	30506					0.10558039576847023
ILKKSSHAV	9	Unmodified	_ILKKSSHAV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ENSG00000130638|ENST00000252934|ATXN10;ATXN10-TUBGCP6|2|fusion	ATXN10-TUBGCP6|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.80596923828125	2	491.805834	981.597115	2.5221	0.0012404	-2.4706	-0.0012151	0.051477	2.5317E-05	491.8045089686397	18.894	0.4452	18.652	18.474	18.92	-0.24188					18	8	3	0	0	0	0.29158	1	333	333		76.774	5.4784	1	217910			26479	165;4434	18285	18323	30507	30507					0.10558039576847023
ILKKYRLV	8	Unmodified	_ILKKYRLV_					0	0	0		ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	516.850045	1031.68554	-0.22872	-0.00011822	-0.75964	-0.00039262	-0.98837	-0.00051084	516.8492386407195	53.67	0.16914	53.472	53.387	53.556	-0.19739					6	4	2	0	0	0	0.027866	1	5644	5644		42.474	3.6683	1	170840			26480	11052	18286	18324	30508	30508					0.1709607988730113
ILKLHNSR	8	Unmodified	_ILKLHNSR_					0	0	0			REV__LINGO1|p.R130H|1|0.35|ENSG00000169783|chr15:77615518-77615518|C/T|missense_variant	REV__LINGO1|p.R130H|1|0.35|ENSG00000169783|chr15:77615518-77615518|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.8034973144531	2	490.803626	979.592698	-0.69619	-0.00034169	0.21433	0.00010519	-0.48186	-0.0002365	490.8037124440314	35.574	0.96212	35.574	35.2	36.162	0					102	25	5	0	0	0	0.81662	1	2739	2739		57.811	9.8957	1	4851900	+		26481	36313	18287	18325	30509	30509					0.10208575153933452
ILKLNKPEWP	10	Unmodified	_ILKLNKPEWP_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.3717651367188	2	619.368798	1236.72304	-0.36932	-0.00022875	3.8835	0.0024053	3.5142	0.0021766	619.3711950685711	100.23	0.72057	100.22	99.857	100.58	-0.0050812					48	19	3	0	0	0	1.089	1	12761	12761		34.173	3.8548	1	919110			26482	749	18288	18326	30510	30510					0.11415126362271621
ILKLTQTSPPL	11	Unmodified	_ILKLTQTSPPL_					0	0	0			REV__ENSG00000165409|ENST00000298171|TSHR;REV__nc|ENSG00000165409|P16473-3|TSHR	REV__ENSG00000165409|ENST00000298171|TSHR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8722534179688	2	605.873914	1209.73327	-0.27427	-0.00016617	-2.7727	-0.0016799	-3.047	-0.0018461	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	1.0624	1	12277	12277		21.686	0.73882	1	990980	+		26483	25884;36872	18289	18327	30511	30511					0.13679689296850484
ILKPKSSP	8	Unmodified	_ILKPKSSP_					0	0	0			REV__ENSG00000181666|ENST00000392153|ZNF875	REV__ENSG00000181666|ENST00000392153|ZNF875	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7928466796875	2	435.276378	868.538203	-0.14514	-6.3177E-05	0.68607	0.00029863	0.54093	0.00023546	435.2765340940995	33.35	0.64539	33.118	32.752	33.397	-0.23107					34	15	3	0	0	0	0.027866	1	2360	2360		24.203	0	1	309370	+		26484	27417	18290	18328	30512	30512					0.09867563282523406
ILKPPFPPI	9	Unmodified	_ILKPPFPPI_					0	0	0		ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.327880859375	2	511.325871	1020.63719	0.64627	0.00033046	2.0341	0.0010401	2.6804	0.0013705	511.326802953704	96.271	1.203	96.148	95.771	96.974	-0.12305					64	27	3	0	0	0	0.96855	2	11887	11887;11922		26.796	4.3048	1	973630			26485	8125	18291	18329	30513;30514	30513					0.12769586247418374
ILKPRLATA	9	Unmodified	_ILKPRLATA_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2772521972656	2	491.824027	981.633501	0.56306	0.00027693	-0.47263	-0.00023245	0.090424	4.4473E-05	491.8234612440896	40.458	0.97116	40.346	40.055	41.027	-0.11222					67	26	3	0	0	0	0.024506	1	3544	3544		30.504	13.139	1	1942100	+		26486	21403	18292	18330	30515	30515					0.1419491647355926
ILKPVPKKV	9	Unmodified	_ILKPVPKKV_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE;REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7896423339844	2	511.360245	1020.70594	-1.0424	-0.00053305	-1.2403	-0.00063426	-2.2827	-0.0011673	511.35986299202403	85.68	0.20345	85.703	85.534	85.737	0.023666					7	4	2	0	0	0	0.024466	1	10672	10672		18.324	14.339	1	98081	+		26487	24166;33420	18293	18331	30516	30516					0.196412505471244
ILKQLGYNL	9	Unmodified	_ILKQLGYNL_					0	0	0			REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF	REV__ENST00000604714.1_1_10:122667871-122668222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.296875	2	531.321317	1060.62808	-0.46618	-0.00024769	0.69719	0.00037043	0.23101	0.00012274	531.3215775491549	77.594	0.6665	77.594	77.167	77.833	0					36	15	3	0	0	0	0.024381	1	9599	9599		45.952	0	1	1116400	+		26488	35911	18294	18332	30517	30517					0.1001919289108173
ILKRKKLV	8	Unmodified	_ILKRKKLV_					0	0	0			REV__ENSG00000171180|ENST00000641868|OR2M4	REV__ENSG00000171180|ENST00000641868|OR2M4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.3239440917969	2	499.365862	996.717171	0.071104	3.5507E-05	-1.6046	-0.00080131	-1.5335	-0.0007658	499.3652963645073	63.939	0.21407	63.688	63.624	63.838	-0.25141					7	5	2	0	0	0	0.027866	1	7482	7482		37.028	0	1	104600	+		26489	26551	18295	18333	30518	30518					0.21868072641279923
ILKRVKDI	8	Unmodified	_ILKRVKDI_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.8155212402344	2	492.831852	983.649151	0.56183	0.00027689	-0.82199	-0.0004051	-0.26016	-0.00012822	492.83140978049255	20.889	0.39248	20.693	20.582	20.975	-0.19577					15	7	3	0	0	0	0.027866	1	597	597		33.516	3.674	1	44144			26490	5359	18296	18334	30519	30519					0.1566720299060762
ILKSFAALLN	10	Unmodified	_ILKSFAALLN_					0	0	0			REV__ENSG00000118007|ENST00000383202|STAG1;REV__NCK1-STAG1|1|fusion	REV__NCK1-STAG1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3348388671875	2	545.336967	1088.65938	-0.6052	-0.00033004	-2.9831	-0.0016268	-3.5883	-0.0019568	545.3352759136492	105.47	0.38431	105.47	105.32	105.71	0.00096893					23	13	2	0	0	0	1.0122	1	13510	13510		44.377	0.26039	1	210980	+		26491	22382;37265	18297	18335	30520	30520					0.11859765925191823
ILKSFAALLN	10	Unmodified	_ILKSFAALLN_					0	0	0			REV__ENSG00000118007|ENST00000383202|STAG1;REV__NCK1-STAG1|1|fusion	REV__NCK1-STAG1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3335571289062	2	545.336967	1088.65938	-0.65491	-0.00035715	-2.7375	-0.0014929	-3.3924	-0.00185	545.3352622645874	105.61	0.37705	105.61	105.41	105.79	0.00014496					23	12	2	0	0	0	1.0816	1	13484	13484		35.152	4.8343	1	150070	+		26492	22382;37265	18297	18335	30521	30521					0.11859765925191823
ILKSHSSFQPS	11	Unmodified	_ILKSHSSFQPS_					0	0	0			REV__nc|ENSG00000095637|Q9BX66-11|SORBS1	REV__nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.829833984375	2	615.827495	1229.64044	-0.40432	-0.00024899	3.6494	0.0022474	3.2451	0.0019984	615.8296077840357	98.635	1.3876	98.635	98.317	99.704	0					78	31	3	0	0	0	0.82076	1	12611	12611		56.434	4.906	1	905310	+		26493	20972	18298	18336	30522	30522					0.03480184563477451
ILKSHSSFQPS	11	Unmodified	_ILKSHSSFQPS_					0	0	0			REV__nc|ENSG00000095637|Q9BX66-11|SORBS1	REV__nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	615.8296508789062	2	615.827495	1229.64044	0.25456	0.00015676	3.0332	0.0018679	3.2877	0.0020247	615.8292512725548	98.587	1.4271	98.597	98.19	99.617	0.010231					87	32	3	0	0	0	0.82076	1	12576	12576		56.434	1.7114	1	911620	+		26494	20972	18298	18336	30523	30523					0.03480184563477451
ILKTWVHL	8	Unmodified	_ILKTWVHL_					0	0	0			REV__ENST00000258991.7_1_17:62225146-62225452:-|nuORF	REV__ENST00000258991.7_1_17:62225146-62225452:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3108825683594	2	505.313295	1008.61204	-1.1824	-0.0005975	-3.186	-0.0016099	-4.3684	-0.0022074	505.31150554807425	48.481	0.7557	48.205	47.966	48.722	-0.27598					48	20	4	0	0	0	0.78609	1	4795	4795		60.294	1.512	1	2332200	+		26495	29583	18299	18337	30524	30524					0.10807531444845608
ILKVFGRH	8	Unmodified	_ILKVFGRH_					0	0	0			REV__ENST00000567680.1_1_15:66064063-66064450:-|nuORF	REV__ENST00000567680.1_1_15:66064063-66064450:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2877197265625	2	485.303262	968.59197	0.065689	3.1879E-05	-3.5505	-0.0017231	-3.4848	-0.0016912	485.3017797202839	18.418	0.98369	18.287	18.056	19.039	-0.13148					24	19	2	0	0	0	0.027866	1	266	266		21.702	1.2205	1	15683	+		26496	35324	18300	18338	30525	30525					0.10641780504897724
ILKVHGSGTL	10	Unmodified	_ILKVHGSGTL_					0	0	0		ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000464876.5_1_9:139914760-139916113:-|nuORF	ENST00000494046.5_1_9:139914760-139922592:-|nuORF	ENST00000494046.5_1_9:139914760-139922592:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.7687377929688	2	512.811116	1023.60768	0.53169	0.00027265	-0.82987	-0.00042557	-0.29818	-0.00015291	512.8106687750261	55.554	0.88978	55.554	55.249	56.139	0					45	24	4	0	0	0	0.03519	1	6185	6185		60.118	14.146	1	1311600			26497	15517	18301	18339	30526	30526					0.09682022231288556
ILKVIEEEW	9	Unmodified	_ILKVIEEEW_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.8230590820312	2	579.823889	1157.63323	0.75239	0.00043626	-1.0462	-0.00060663	-0.29383	-0.00017037	579.8233462335003	67.85	1.025	67.595	67.323	68.348	-0.25516					59	24	4	0	0	0	0.062622	1	7818	7818		124.08	57.118	1	1048900			26498	18218	18302	18340	30527	30527					0.06071451963043728
ILKVIEEEW	9	Unmodified	_ILKVIEEEW_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	579.823889	1157.63323	-0.49402	-0.00028645	0.42756	0.00024791	-0.066457	-3.8533E-05	579.8240007432127	67.856	0.85122	67.622	67.345	68.196	-0.23376	0.01713	0.00047089	NaN	124.08	51	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	849880			26499	18218	18302	18340							0.06071451963043728
ILKVIEEEW	9	Unmodified	_ILKVIEEEW_					0	0	0		nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	579.823889	1157.63323	-0.40195	-0.00023306	0.20144	0.0001168	-0.20051	-0.00011626	579.8238963961476	67.835	1.1786	67.597	67.334	68.512	-0.23814	-0.0074481	0.00020866	NaN	124.08	61	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	943570			26500	18218	18302	18340							0.06071451963043728
ILKVKKLL	8	Unmodified	_ILKVKKLL_					0	0	0			REV__ENST00000486291.1_1_2:202262833-202263061:-|nuORF	REV__ENST00000486291.1_1_2:202262833-202263061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7774353027344	2	477.857338	953.700124	0.2668	0.00012749	-3.7872	-0.0018097	-3.5204	-0.0016822	477.8560303590758	27.356	0.40121	27.356	27.215	27.616	0					20	10	2	0	0	0	0.027866	1	1475	1475		20.482	5.8177	1	140320	+		26501	30493	18303	18341	30528	30528					0.22142152035473828
ILKVLWCFLI	10	Unmodified	_ILKVLWCFLI_					0	0	0		ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.3724975585938	2	624.382863	1246.75117	-0.38101	-0.0002379	-4.2918	-0.0026797	-4.6728	-0.0029176	624.3801142496206	100.73	0.45973	100.6	100.31	100.77	-0.12504					31	13	3	0	0	0	1.0939	1	12500	12500		33.516	4.3455	1	407080			26502	875	18304	18342	30529	30529					0.13766733018019295
ILKVYSPKN	9	Unmodified	_ILKVYSPKN_					0	0	0		L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|10|1|sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|10|1|sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|10|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3223876953125	2	531.321317	1060.62808	-0.10718	-5.6947E-05	-0.28484	-0.00015134	-0.39202	-0.00020829	531.3211904545689	75.221	1.0504	75.231	74.773	75.824	0.010376					55	27	3	0	0	0	0.34489	1	9157	9157		69.628	10.846	1	1580600			26503	17817	18305	18343	30530	30530					0.10019192891104467
ILKVYSPKN	9	Unmodified	_ILKVYSPKN_					0	0	0		L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|10|1|sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|10|1|sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|10|1|sense	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	531.321317	1060.62808	-0.66702	-0.0003544	0.33653	0.00017881	-0.33049	-0.00017559	531.3215053028329	75.418	1.0007	75.173	74.798	75.799	-0.24455	-0.014059	-1.9538E-06	NaN	69.628	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1601600			26504	17817	18305	18343							0.10019192891104467
ILKYVPSMP	9	Unmodified	_ILKYVPSMP_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|324|3|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|324|3|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|324|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2970581054688	2	524.298996	1046.58344	-0.2623	-0.00013752	-2.534	-0.0013286	-2.7963	-0.0014661	524.2975724524634	103.03	1.0612	103.03	102.67	103.73	0.0054169					80	26	4	0	0	0	0.29158	1	13157	13157		76.774	2.7994	1	4374000			26505	17845	18306	18344	30531	30531					0.06201045753391554
ILLALLCCL	9	Unmodified	_ILLALLCCL_					0	0	0			REV__ENST00000520311.5_1_8:101534829-101534865:-|nuORF	REV__ENST00000520311.5_1_8:101534829-101534865:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.791015625	2	487.792492	973.570431	0.015184	7.4064E-06	-2.3286	-0.0011359	-2.3134	-0.0011285	487.79133905580403	96.734	1.8267	96.573	95.483	97.31	-0.16106					82	41	4	0	0	0	0.80342	1	11913	11913		39.021	0	1	1065200	+		26506	34289	18307	18345	30532	30532					0.08258891369644061
ILLASQKEV	9	Unmodified	_ILLASQKEV_					0	0	0			REV__ENSG00000080503|ENST00000349721|SMARCA2	REV__ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2898254394531	2	500.8055	999.596446	-0.40347	-0.00020206	-0.62267	-0.00031184	-1.0261	-0.0005139	500.80543268293087	83.126	0.38688	83.126	82.922	83.309	0					14	8	3	0	0	0	0.024447	1	10402	10402		25.574	1.0549	1	78169	+		26507	20655	18308	18346	30533	30533					0.09663200137140393
ILLDQSLDL	9	Unmodified	_ILLDQSLDL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2951049804688	2	515.294965	1028.57538	0.43015	0.00022165	-0.017819	-9.1819E-06	0.41233	0.00021247	515.2949333678249	86.063	1.1493	86.063	85.708	86.857	0					63	26	4	0	0	0	0.0090779	4	10805	10793;10805;10817;10829		235.12	77.789	1	2026300			26508	2021	18309	18347	30534;30535;30536;30537	30535					0.06223190037621862
ILLDQSLDL	9	Unmodified	_ILLDQSLDL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2952270507812	2	515.294965	1028.57538	-0.17461	-8.9974E-05	0.45123	0.00023252	0.27662	0.00014254	515.2951132298302	86.027	1.0279	85.982	85.697	86.725	-0.045105					62	23	4	0	0	0	0.013094	4	10759	10759;10771;10782;10795		225.24	67.908	1	1790100			26509	2021	18309	18347	30538;30539;30540;30541	30538					0.06223190037621862
ILLDQSLDL	9	Unmodified	_ILLDQSLDL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.294677734375	2	515.294965	1028.57538	-1.3398	-0.00069037	1.4659	0.00075537	0.12614	6.4997E-05	515.2956412307368	86.013	1.1066	86.037	85.657	86.763	0.023666					66	25	4	0	0	0	0.008678	4	10722	10711;10722;10734;10754		247.94	90.613	1	1984800			26510	2021	18309	18347	30542;30543;30544;30545	30543					0.06223190037621862
ILLDQSLDL	9	Unmodified	_ILLDQSLDL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.294965	1028.57538	0.082951	4.2744E-05	0.3847	0.00019823	0.46765	0.00024098	515.2946711973323	86.124	0.91751	85.937	85.686	86.604	-0.18696	-0.031324	0.00049536	NaN	247.94	31	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153790			26511	2021	18309	18347							0.06223190037621862
ILLDQSLDL	9	Unmodified	_ILLDQSLDL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.294965	1028.57538	0.70361	0.00036257	-1.1743	-0.00060509	-0.47065	-0.00024252	515.2944015595617	86.038	0.82689	85.894	85.666	86.493	-0.14394	-0.074297	-0.0011113	NaN	247.94	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250200			26512	2021	18309	18347							0.06223190037621862
ILLDQSLDL	9	Unmodified	_ILLDQSLDL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.294965	1028.57538	0.30188	0.00015556	-0.53903	-0.00027776	-0.23715	-0.0001222	515.2947005997377	86.034	0.82828	85.897	85.702	86.53	-0.13734	-0.071454	-0.00045662	NaN	247.94	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214980			26513	2021	18309	18347							0.06223190037621862
ILLDQTVRV	9	Unmodified	_ILLDQTVRV_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.8234252929688	2	528.824224	1055.63389	-0.36958	-0.00019545	-0.27539	-0.00014563	-0.64498	-0.00034108	528.8239503048103	61.315	0.83615	61.315	61.032	61.868	0					54	21	4	0	0	0	0.012922	3	7109	7085;7094;7109		209.84	55.055	1	3114700			26514	7346	18310	18348	30546;30547;30548	30548					0.10830291402749026
ILLDQTVRV	9	Unmodified	_ILLDQTVRV_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8239135742188	2	528.824224	1055.63389	-0.047051	-2.4882E-05	-0.49152	-0.00025993	-0.53858	-0.00028481	528.8238108154804	61.519	1.0725	61.292	61.011	62.084	-0.22663					66	28	4	0	0	0	0.014475	2	7103	7092;7103		190.26	71.518	1	2343300			26515	7346	18310	18348	30549;30550	30550					0.10830291402749026
ILLDQTVRV	9	Unmodified	_ILLDQTVRV_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8240356445312	2	528.824224	1055.63389	0.23945	0.00012662	-0.84332	-0.00044597	-0.60387	-0.00031934	528.8236517741866	61.223	0.96742	61.295	61.058	62.026	0.071125					61	25	4	0	0	0	0.014738	2	6999	6999;7012		163.15	53.031	1	3155700			26516	7346	18310	18348	30551;30552	30551					0.10830291402749026
ILLDQTVRV	9	Unmodified	_ILLDQTVRV_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.824224	1055.63389	-1.1628	-0.0006149	0.7762	0.00041047	-0.38656	-0.00020442	528.8244257452627	61.447	0.57877	61.271	61.038	61.617	-0.17624	-0.044046	0.0011744	NaN	163.15	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617920			26517	7346	18310	18348							0.10830291402749026
ILLDQTVRV	9	Unmodified	_ILLDQTVRV_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.824224	1055.63389	-0.27555	-0.00014572	-0.21207	-0.00011215	-0.48762	-0.00025787	528.8238906740232	61.661	0.68736	61.404	61.133	61.821	-0.25725	0.089185	0.00012919	NaN	163.15	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698200			26518	7346	18310	18348							0.10830291402749026
ILLEALEKW	9	Unmodified	_ILLEALEKW_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2850341796875	2	557.828975	1113.6434	-0.11935	-6.6579E-05	0.21297	0.0001188	0.09362	5.2224E-05	557.8286321776166	78.545	0.38953	78.389	78.212	78.601	-0.15592					11	8	2	0	0	0	0.024292	1	9339	9339		58.782	0	1	63644			26519	2675	18311	18349	30553	30553					0.09112059688277441
ILLEALEKW	9	Unmodified	_ILLEALEKW_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.828975	1113.6434	-0.16942	-9.4507E-05	-0.28465	-0.00015879	-0.45407	-0.00025329	557.8286179136228	78.667	0.66986	78.667	78.323	78.993	0	0.11213	-5.0549E-05	NaN	58.782	44	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276940			26520	2675	18311	18349							0.09112059688277441
ILLEALEKW	9	Unmodified	_ILLEALEKW_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.828975	1113.6434	-0.14478	-8.0763E-05	-0.38166	-0.0002129	-0.52644	-0.00029366	557.828737574531	78.779	0.79104	78.587	78.298	79.089	-0.19211	0.031844	-0.00015878	NaN	58.782	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299960			26521	2675	18311	18349							0.09112059688277441
ILLEALEKW	9	Unmodified	_ILLEALEKW_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.828975	1113.6434	-0.017358	-9.6826E-06	-0.18632	-0.00010393	-0.20367	-0.00011362	557.828577736064	78.673	0.71011	78.69	78.399	79.109	0.017174	0.13452	5.9157E-05	NaN	58.782	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279170			26522	2675	18311	18349							0.09112059688277441
ILLEKEAEL	9	Unmodified	_ILLEKEAEL_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3109130859375	2	529.310615	1056.60668	-0.91976	-0.00048684	0.97414	0.00051562	0.05438	2.8784E-05	529.3109195178018	57.022	1.1066	57.022	56.46	57.567	0					112	30	5	0	0	0	0.030064	2	6409	6387;6409		141.52	22.777	1	8873500			26523	7815	18312	18350	30554;30555	30555					0.08063763071709218
ILLEKEAEL	9	Unmodified	_ILLEKEAEL_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3110961914062	2	529.310615	1056.60668	-0.1984	-0.00010501	0.29396	0.0001556	0.095563	5.0583E-05	529.3105563654153	57.195	1.1587	57.03	56.423	57.582	-0.16431					107	31	4	0	0	0	0.025498	4	6393	6383;6393;6404;6417		145.16	22.98	1	7209800			26524	7815	18312	18350	30556;30557;30558;30559	30557					0.08063763071709218
ILLEKEAEL	9	Unmodified	_ILLEKEAEL_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3108520507812	2	529.310615	1056.60668	-0.24849	-0.00013153	0.29304	0.00015511	0.044558	2.3585E-05	529.3106117392903	56.865	1.0333	56.96	56.432	57.465	0.09531					90	28	4	0	0	0	0.025498	4	6294	6284;6294;6305;6317		145.16	22.98	1	8420900			26525	7815	18312	18350	30560;30561;30562;30563	30561					0.08063763071709218
ILLEKEAEL	9	Unmodified	_ILLEKEAEL_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.310615	1056.60668	-0.66572	-0.00035237	0.28696	0.00015189	-0.37876	-0.00020048	529.3114902505305	57.176	0.89177	57.009	56.714	57.606	-0.1672	-0.0059457	-0.00017297	NaN	145.16	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1141800			26526	7815	18312	18350							0.08063763071709218
ILLEKEAEL	9	Unmodified	_ILLEKEAEL_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.310615	1056.60668	-0.11296	-5.9792E-05	-0.2656	-0.00014058	-0.37856	-0.00020038	529.3110999774965	57.218	0.64824	57.015	56.672	57.32	-0.20208	0.00046499	-0.00075792	NaN	145.16	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	927980			26527	7815	18312	18350							0.08063763071709218
ILLEKEAEL	9	Unmodified	_ILLEKEAEL_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.310615	1056.60668	-0.21495	-0.00011378	0.70322	0.00037222	0.48827	0.00025845	529.3113822633944	57.278	0.65699	57.054	56.738	57.395	-0.2248	0.038559	0.00026769	NaN	145.16	53	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1088500			26528	7815	18312	18350							0.08063763071709218
ILLESFSTN	9	Unmodified	_ILLESFSTN_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.269775390625	2	512.27149	1022.52843	0.37647	0.00019285	-0.98032	-0.00050219	-0.60386	-0.00030934	512.2706228982657	104.7	1.3087	104.53	104.2	105.51	-0.16484					84	41	3	0	0	0	0.91321	1	13040	13040		31.53	2.3803	1	273330			26529	6526	18313	18351	30564	30564					0.018063304864767815
ILLFFDLIIYK	11	Unmodified	_ILLFFDLIIYK_					0	0	0			REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	REV__ENST00000483808.1_1_3:143691750-143704756:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.6213684082031	3	466.619613	1396.83701	0.077056	3.5956E-05	3.9907	0.0018621	4.0678	0.0018981	466.6214109484827	46.874	0.52938	46.604	46.379	46.908	-0.26939					52	14	5	0	0	0	1.0712	1	4525	4525		19.263	0.73163	1	5469600	+		26530	33521	18314	18352	30565	30565					0.1544659640453574
ILLFGGAECF	10	Carbamidomethyl (C)	_ILLFGGAEC(Carbamidomethyl (C))F_	ILLFGGAEC(1)F		ILLFGGAEC(97)F		0	1	0		ENSG00000279000|ENST00000641238|OR10A6	ENSG00000279000|ENST00000641238|OR10A6	ENSG00000279000|ENST00000641238|OR10A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.7853393554688	2	563.78371	1125.55287	-1.3226	-0.00074567	4.2632	0.0024036	2.9406	0.0016579	563.7858907382749	65.325	0.86288	65.122	64.818	65.681	-0.20254					50	20	3	0	0	0	0.41195	1	7464	7464		97.473	26.177	1	2019400			26531	11070	18315	18353	30566	30566	156				-0.004887326316520557
ILLFLGYDV	9	Unmodified	_ILLFLGYDV_					0	0	0		ENST00000485101.5_1_3:186502728-186502902:+|nuORF	ENST00000485101.5_1_3:186502728-186502902:+|nuORF	ENST00000485101.5_1_3:186502728-186502902:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.8019409179688	2	526.804968	1051.59538	-0.67997	-0.00035821	-3.2191	-0.0016958	-3.899	-0.002054	526.803106718843	76.486	0.92637	76.258	75.927	76.853	-0.22843					68	22	5	0	0	0	0.60698	1	9426	9426		52.299	0.96372	1	3284800			26532	15319	18316	18354	30567	30567					0.07164985768213228
ILLFRDALE	9	Unmodified	_ILLFRDALE_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.275146484375	2	545.318774	1088.623	-0.97765	-0.00053313	2.4865	0.001356	1.5089	0.00082282	545.320922378942	78.42	0.95255	78.436	78.195	79.148	0.015907					63	22	4	0	0	0	0.024325	1	9720	9720		31.955	0	1	389570	+		26533	27189	18317	18355	30568	30568					0.08222889028456848
ILLGGELFNCV	11	Unmodified	_ILLGGELFNCV_					0	0	0			REV__ENSG00000177879|ENST00000316788|AP3S1	REV__ENSG00000177879|ENST00000316788|AP3S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.317917	1176.62128	-2.1312	-0.0012559	-3.1958	-0.0018833	-5.3269	-0.0031393	589.3153127830403	92.651	0.37618	92.507	92.406	92.782	-0.14356					9	8	2	0	0	0	0.024752	1	11413	11413		40.778	0	1	79119	+		26534	27149	18318	18356	30569	30569					0.0400351194821269
ILLGGIGELW	10	Unmodified	_ILLGGIGELW_					0	0	0			REV__ENST00000395496.5_1_6:32136189-32136330:-|nuORF	REV__ENST00000395496.5_1_6:32136189-32136330:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.755859375	2	535.815867	1069.61718	-0.77553	-0.00041554	0.40252	0.00021568	-0.37301	-0.00019986	535.8163090685746	76.697	0.676	76.529	76.223	76.899	-0.16853					26	15	2	0	0	0	0.03519	1	9083	9083		37.159	0	1	223920	+		26535	31701	18319	18357	30570	30570					0.08515790516798916
ILLGKISVT	9	Unmodified	_ILLGKISVT_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.28778076171875	2	472.312961	942.611368	0.45763	0.00021615	-1.2549	-0.00059268	-0.79722	-0.00037654	472.3118339509118	94.257	0.41316	94.135	93.886	94.299	-0.12215					16	9	3	0	0	0	0.024457	1	11602	11602		37.159	0	1	94565	+	+	26536	19568	18320	18358	30571	30571					0.13776692005137647
ILLGMFFV	8	Unmodified	_ILLGMFFV_					0	0	0		ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2724609375	2	470.27225	938.529947	-0.047033	-2.2118E-05	-0.22432	-0.00010549	-0.27136	-0.00012761	470.2720597866912	91.389	1.7988	91.249	90.823	92.622	-0.13942					104	42	5	0	0	0	1.0241	1	11164	11164		33.493	5.2387	1	5353800			26537	6698	18321	18359	30572	30572					0.05822293041535431
ILLGMRGI	8	Unmodified	_ILLGMRGI_					0	0	0		ENST00000397174.6_2_1:41493379-41493838:-|nuORF	ENST00000397174.6_2_1:41493379-41493838:-|nuORF	ENST00000397174.6_2_1:41493379-41493838:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.7749328613281	2	436.772948	871.531344	0.28535	0.00012463	3.8657	0.0016885	4.1511	0.0018131	436.7745739222148	90.041	2.3328	90.025	89.541	91.873	-0.016708					171	55	5	0	0	0	1.0017	1	11325	11325		37.028	1.8278	1	37030000			26538	13585	18322	18360	30573	30573					0.0904392713028983
ILLGNSLLI	9	Unmodified	_ILLGNSLLI_					0	0	0		ENSG00000179055|ENST00000641530|OR13D1;nc|ENSG00000179055|Q8NGV5|OR13D1	ENSG00000179055|ENST00000641530|OR13D1	ENSG00000179055|ENST00000641530|OR13D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3004455566406	2	478.312961	954.611368	-0.86764	-0.000415	3.0126	0.0014409	2.1449	0.0010259	478.3149931291374	37.77	0.2069	37.688	37.57	37.777	-0.082516					7	5	2	0	0	0	0.023181	1	3085	3085		82.305	2.854	1	119090			26539	8865	18323	18361	30574	30574					0.13224692005155703
ILLGSLKR	8	Unmodified	_ILLGSLKR_					0	0	0			REV__ENSG00000180044|ENST00000326474|C3orf80	REV__ENSG00000180044|ENST00000326474|C3orf80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2740783691406	2	450.30547	898.596387	0.10512	4.7335E-05	-1.4639	-0.0006592	-1.3588	-0.00061187	450.30468243447007	92.412	0.73941	92.271	91.922	92.662	-0.14131					27	17	3	0	0	0	0.027866	1	11316	11316		44.531	11.015	1	205210	+		26540	27312	18324	18362	30575	30575					0.1430324492780528
ILLGTKPMV	9	Oxidation (M)	_ILLGTKPM(Oxidation (M))V_		ILLGTKPM(1)V		ILLGTKPM(46)V	0	0	1			REV__ENSG00000268606|ENST00000684311|MAGEA2	REV__ENSG00000268606|ENST00000684311|MAGEA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3009033203125	2	494.298996	986.583439	0.89614	0.00044296	2.2975	0.0011357	3.1936	0.0015786	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	0.70186	1	12202	12202		45.952	10.334	1	45891000	+		26541	19481	18325	18363	30576	30576		603			0.08961045753403596
ILLHSIQGL	9	Unmodified	_ILLHSIQGL_					0	0	0		ENST00000392782.5_3_2:160303483-160304836:-|nuORF	ENST00000392782.5_3_2:160303483-160304836:-|nuORF	ENST00000392782.5_3_2:160303483-160304836:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2833251953125	2	497.30821	992.601866	-0.035774	-1.7791E-05	-0.51206	-0.00025465	-0.54784	-0.00027244	497.3076867140673	81.988	0.65173	81.988	81.711	82.363	0					35	15	3	0	0	0	0.020546	1	10204	10204		96.19	0	1	927100			26542	13425	18326	18364	30577	30577					0.10526923719623937
ILLIGVSFL	9	Unmodified	_ILLIGVSFL_					0	0	0			REV__ENSG00000137726|ENST00000526014|FXYD6	REV__ENSG00000137726|ENST00000526014|FXYD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.8181457519531	2	487.817879	973.621205	-0.18203	-8.8798E-05	1.5244	0.00074365	1.3424	0.00065485	487.81782356186727	103.83	0.99443	103.83	103.38	104.38	0					40	23	2	0	0	0	0.93795	1	13338	13338		29.842	4.3914	1	175110	+		26543	23776	18327	18365	30578	30578					0.13333880010532084
ILLIGVSFL	9	Unmodified	_ILLIGVSFL_					0	0	0			REV__ENSG00000137726|ENST00000526014|FXYD6	REV__ENSG00000137726|ENST00000526014|FXYD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.8179626464844	2	487.817879	973.621205	-0.064843	-3.1631E-05	1.5907	0.00077596	1.5258	0.00074433	487.8178408211123	103.85	1.4045	103.85	103.44	104.84	0.0031357					55	38	2	0	0	0	0.85941	1	13308	13308		35.201	0	1	163290	+		26544	23776	18327	18365	30579	30579					0.13333880010532084
ILLIIGSN	8	Unmodified	_ILLIIGSN_					0	0	0			REV__ENSG00000181273|ENST00000326855|OR5AK2	REV__ENSG00000181273|ENST00000326855|OR5AK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.58197021484375	2	421.770929	841.527304	0.97159	0.00040979	-4.4788	-0.001889	-3.5072	-0.0014792	421.76919920672776	96.66	0.51921	96.537	96.187	96.706	-0.12305					15	11	2	0	0	0	0.027866	1	11934	11934		17.365	4.4058	1	64286	+		26545	27394	18328	18366	30580	30580					0.1002016090824327
ILLISAKKT	9	Unmodified	_ILLISAKKT_					0	0	0			REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.8154602050781	2	493.83406	985.653567	-0.21108	-0.00010424	-1.9393	-0.00095771	-2.1504	-0.0010619	493.8328993084805	20.783	0.2423	20.615	20.494	20.736	-0.16774					6	4	2	0	0	0	0.023596	1	604	604		85.359	24.388	1	11276	+		26546	36732	18329	18367	30581	30581					0.16016667413498453
ILLITMGPDA	10	Unmodified	_ILLITMGPDA_					0	0	0		sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	sp|P03208|BILF1_EBVB9G-proteincoupledreceptorBILF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BILF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.75146484375	2	522.293911	1042.57327	-0.17762	-9.2768E-05	-0.5467	-0.00028554	-0.72431	-0.00037831	522.7957920682135	42.312	0.47751	42.082	41.965	42.442	-0.23029					14	12	2	0	0	0	0.03519	1	3790	3790		27.882	0	1	85724			26547	37929	18330	18368	30582	30582					0.0536843802817657
ILLIVLVVY	9	Unmodified	_ILLIVLVVY_					0	0	0			REV__ENSG00000165970|ENST00000525748|SLC6A5	REV__ENSG00000165970|ENST00000525748|SLC6A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8008422851562	2	522.857004	1043.69945	-0.14058	-7.3506E-05	0.35306	0.0001846	0.21247	0.00011109	522.8572240194525	19.535	0.41609	19.535	19.366	19.782	0					15	8	3	0	0	0	0.024541	1	413	413		4.3163	2.8514	1	61104	+		26548	25951	18331	18369	30583	30583					0.17935312595773212
ILLIYVLAM	9	Unmodified	_ILLIYVLAM_					0	0	0			REV__ENST00000305963.2_1_X:135046992-135047052:-|nuORF	REV__ENST00000305963.2_1_X:135046992-135047052:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.8268432617188	2	524.827389	1047.64023	0.15236	7.9965E-05	-0.99221	-0.00052074	-0.83984	-0.00044077	524.8267476679999	97.913	2.4605	97.923	97.283	99.743	0.010231					170	56	6	0	0	0	0.80342	1	12430	12430		39.021	9.18	1	13084000	+		26549	30119	18332	18370	30584	30584					0.11831093309933749
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.3336486816406	2	507.333893	1012.65323	-0.64818	-0.00032885	-0.90036	-0.00045678	-1.5485	-0.00078563	507.3331021789552	80.381	1.1421	80.381	80.036	81.178	0					87	27	5	0	0	0	0.15388	1	9981	9981		98.582	21.808	1	4180300			26550	6083	18333	18371	30585	30585					0.14741247693666537
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.33380126953125	2	507.333893	1012.65323	-0.94109	-0.00047745	-2.7248	-0.0013824	-3.6659	-0.0018598	507.33132538316534	80.553	2.5907	80.401	80.049	82.64	-0.15169					120	62	4	0	0	0	0.041068	2	9963	9963;9975		132.76	53.307	1	4067300			26551	6083	18333	18371	30586;30587	30586					0.14741247693666537
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3323669433594	2	507.333893	1012.65323	-0.78833	-0.00039995	-0.65778	-0.00033371	-1.4461	-0.00073366	507.33322394590465	80.357	1.0208	80.378	80.063	81.083	0.021446					81	24	5	0	0	0	0.10464	1	9923	9923		109.48	10.896	1	4246600			26552	6083	18333	18371	30588	30588					0.14741247693666537
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.33453369140625	2	507.333893	1012.65323	0.21162	0.00010736	-0.89586	-0.0004545	-0.68425	-0.00034714	507.33319773255397	80.419	1.7667	80.182	79.789	81.555	-0.23784					94	42	4	0	0	0	0.094442	3	9615	9603;9615;9626		112.41	21.634	1	2692800			26553	6083	18333	18371	30589;30590;30591	30590					0.14741247693666537
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.33392333984375	2	507.333893	1012.65323	0.14162	7.1851E-05	-0.894	-0.00045355	-0.75237	-0.0003817	507.3332441693236	80.345	1.7784	80.138	79.757	81.535	-0.20633					87	42	4	0	0	0	0.094442	5	9640	9618;9631;9640;9652;9665		112.41	29.66	1	2669300			26554	6083	18333	18371	30592;30593;30594;30595;30596	30594					0.14741247693666537
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3338317871094	2	507.333893	1012.65323	-0.16546	-8.3941E-05	-0.53149	-0.00026964	-0.69694	-0.00035358	507.33343009093653	80.282	1.6528	80.136	79.785	81.438	-0.146					83	39	4	0	0	0	0.094442	5	9612	9591;9601;9612;9625;9639		112.41	14.13	1	2567900			26555	6083	18333	18371	30597;30598;30599;30600;30601	30599					0.14741247693666537
ILLKICKS	8	Unmodified	_ILLKICKS_					0	0	0			REV__ENST00000301923.13_2_22:40720946-40721057:+|nuORF	REV__ENST00000301923.13_2_22:40720946-40721057:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2252502441406	2	459.296256	916.57796	-0.29523	-0.0001356	-3.4322	-0.0015764	-3.7274	-0.001712	459.2945312596999	26.07	0.17802	25.902	25.809	25.988	-0.16816					7	5	2	0	0	0	0.027866	1	1311	1311		24.203	0	1	99845	+		26556	30070	18334	18372	30602	30602					0.11633366961575575
ILLKKYLM	8	Unmodified	_ILLKKYLM_					0	0	0		ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.3272705078125	2	511.327556	1020.64056	0.38036	0.00019449	-1.1325	-0.0005791	-0.75218	-0.00038461	511.32684664670245	96.235	1.1549	96.098	95.725	96.88	-0.13671					63	26	4	0	0	0	1.0574	1	11894	11894		15.636	0.97212	1	1446800			26557	2307	18335	18373	30603	30603					0.13106513029765665
ILLKVHEPN	9	Unmodified	_ILLKVHEPN_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8172607421875	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.75397	1	11134	11134		42.396	4.5846	1	3741200	+		26558	22460	18336	18374	30604	30604					0.09498308748334239
ILLLFPHAM	9	Unmodified	_ILLLFPHAM_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8140869140625	2	527.809531	1053.60451	2.1253	0.0011218	-2.5263	-0.0013334	-0.40102	-0.00021166	527.8081828594172	18.26	0.49093	18.26	17.94	18.431	0					16	9	3	0	0	0	0.024541	1	277	277		21.702	0	1	54841	+		26559	27829	18337	18375	30605	30605					0.07985055852918777
ILLLFVQGLFY	11	Unmodified	_ILLLFVQGLFY_					0	0	0		ENST00000397128.6_1_5:40760712-40760853:-|nuORF	ENST00000397128.6_1_5:40760712-40760853:-|nuORF	ENST00000397128.6_1_5:40760712-40760853:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.6012268066406	3	442.600442	1324.7795	0.19098	8.4528E-05	0.58448	0.00025869	0.77546	0.00034322	442.6009574074855	102.43	0.67945	102.3	102.03	102.71	-0.1293					50	15	4	0	0	0	1.0499	1	12745	12745		25.126	5.8633	1	675520			26560	13580	18338	18376	30606	30606					0.1300975419894712
ILLLFVQGLFY	11	Unmodified	_ILLLFVQGLFY_					0	0	0		ENST00000397128.6_1_5:40760712-40760853:-|nuORF	ENST00000397128.6_1_5:40760712-40760853:-|nuORF	ENST00000397128.6_1_5:40760712-40760853:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.6009216308594	3	442.600442	1324.7795	-0.025854	-1.1443E-05	1.3816	0.00061148	1.3557	0.00060004	442.60099916555686	102.47	0.68022	102.34	102.04	102.72	-0.12666					29	15	2	0	0	0	1.0712	1	12765	12765		19.263	0.29635	1	526640			26561	13580	18338	18376	30607	30607					0.1300975419894712
ILLLGPPK	8	Unmodified	_ILLLGPPK_					0	0	0		ENST00000601724.5_1_19:8478196-8486699:+|nuORF	ENST00000601724.5_1_19:8478196-8486699:+|nuORF	ENST00000601724.5_1_19:8478196-8486699:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7748107910156	2	425.791664	849.568775	-0.73937	-0.00031482	-3.6586	-0.0015578	-4.3979	-0.0018726	425.790298405831	43.094	0.32855	43.094	42.895	43.224	0					13	8	2	0	0	0	0.027866	1	4033	4033		35.201	13.498	1	109720			26562	17516	18339	18377	30608	30608					0.13797341667566343
ILLLGPPK	8	Unmodified	_ILLLGPPK_					0	0	0		ENST00000601724.5_1_19:8478196-8486699:+|nuORF	ENST00000601724.5_1_19:8478196-8486699:+|nuORF	ENST00000601724.5_1_19:8478196-8486699:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	425.791664	849.568775	-0.41219	-0.00017551	-5.9554	-0.0025357	-6.3676	-0.0027113	425.7891278524222	43.294	0.29044	43.155	42.956	43.247	-0.13929	0.042718	0.0002562	NaN	35.201	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123120			26563	17516	18339	18377							0.13797341667566343
ILLLGPPK	8	Unmodified	_ILLLGPPK_					0	0	0		ENST00000601724.5_1_19:8478196-8486699:+|nuORF	ENST00000601724.5_1_19:8478196-8486699:+|nuORF	ENST00000601724.5_1_19:8478196-8486699:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	425.791664	849.568775	0.68001	0.00028954	-8.4412	-0.0035942	-7.7612	-0.0033047	425.7873443252465	43.057	0.17722	43.087	42.939	43.116	0.030823	-0.024515	-0.0018607	NaN	35.201	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37411			26564	17516	18339	18377							0.13797341667566343
ILLLHNEPL	9	Unmodified	_ILLLHNEPL_					0	0	0			REV__nc|ENSG00000186088|A4D1B5-2|GSAP	REV__nc|ENSG00000186088|A4D1B5-2|GSAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7984619140625	2	531.321317	1060.62808	0.1436	7.6296E-05	-1.7676	-0.00093917	-1.624	-0.00086288	531.3201275424301	99.644	0.43532	99.639	99.299	99.734	-0.0050888					13	9	2	0	0	0	0.024319	1	12628	12628		56.721	4.4219	1	52284	+		26565	37024	18340	18378	30609	30609					0.10019192891104467
ILLLHNEPL	9	Unmodified	_ILLLHNEPL_					0	0	0			REV__nc|ENSG00000186088|A4D1B5-2|GSAP	REV__nc|ENSG00000186088|A4D1B5-2|GSAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.321317	1060.62808	-0.28762	-0.00015282	-2.5804	-0.001371	-2.868	-0.0015238	531.3197267818466	99.535	0.47224	99.546	99.312	99.785	0.010231	-0.01255	-0.00015933	NaN	76.774	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82318	+		26566	37024	18340	18378							0.10019192891104467
ILLLHNEPL	9	Unmodified	_ILLLHNEPL_					0	0	0			REV__nc|ENSG00000186088|A4D1B5-2|GSAP	REV__nc|ENSG00000186088|A4D1B5-2|GSAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.321317	1060.62808	0.46194	0.00024544	-2.838	-0.0015079	-2.376	-0.0012624	531.3196839830032	99.626	0.34303	99.49	99.334	99.677	-0.13526	-0.067795	-0.00043301	NaN	76.774	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32146	+		26567	37024	18340	18378							0.10019192891104467
ILLLQPPEA	9	Unmodified	_ILLLQPPEA_					0	0	0		nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.28167724609375	2	497.302593	992.590633	0.13483	6.7053E-05	1.0685	0.00053136	1.2033	0.00059841	497.3035659097783	82.271	0.8135	82.09	81.517	82.331	-0.18079					35	18	3	0	0	0	0.022083	1	9876	9876		99.375	8.5983	1	140950			26568	18068	18341	18379	30610	30610					0.0940410162546641
ILLLQPPEA	9	Unmodified	_ILLLQPPEA_					0	0	0		nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.302593	992.590633	0.029312	1.4577E-05	-0.58639	-0.00029161	-0.55708	-0.00027704	497.3022046053189	82.427	0.38535	82.427	82.279	82.664	0	0.22698	-0.00093264	NaN	99.375	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240630			26569	18068	18341	18379							0.0940410162546641
ILLLQPPEA	9	Unmodified	_ILLLQPPEA_					0	0	0		nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.302593	992.590633	-0.15887	-7.9005E-05	-1.1399	-0.0005669	-1.2988	-0.0006459	497.30192325639547	82.311	0.1274	82.337	82.231	82.358	0.025711	0.13646	-0.0014832	NaN	99.375	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88346			26570	18068	18341	18379							0.0940410162546641
ILLLQPPEA	9	Unmodified	_ILLLQPPEA_					0	0	0		nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.302593	992.590633	0.33827	0.00016822	0.030423	1.5129E-05	0.3687	0.00018335	497.3025989813259	82.279	0.60547	82.059	81.785	82.391	-0.22015	-0.14122	-0.00031916	NaN	99.375	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265430			26571	18068	18341	18379							0.0940410162546641
ILLLQPPEA	9	Unmodified	_ILLLQPPEA_					0	0	0		nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	nc|ENSG00000068724|Q9ULT0-3|TTC7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	497.302593	992.590633	-1.0025	-0.00049854	1.4796	0.0007358	0.47711	0.00023727	497.3032509992524	82.228	0.51979	82.088	81.827	82.347	-0.14014	-0.11226	0.0011222	NaN	99.375	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156320			26572	18068	18341	18379							0.0940410162546641
ILLLRSFSTG	10	Unmodified	_ILLLRSFSTG_					0	0	0		ENST00000475188.1_1_7:130138082-130138294:+|nuORF	ENST00000475188.1_1_7:130138082-130138294:+|nuORF	ENST00000475188.1_1_7:130138082-130138294:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8300170898438	2	553.832049	1105.64954	0.36892	0.00020432	-4.1653	-0.0023069	-3.7964	-0.0021026	553.8295563012404	101.52	0.97879	101.39	101.09	102.07	-0.13156					52	22	4	0	0	0	1.1088	1	12598	12598		31.53	4.8369	1	618770			26573	15054	18342	18380	30611	30611					0.10094577919812764
ILLLSGHNVE	10	Unmodified	_ILLLSGHNVE_					0	0	0		ENST00000379825.6_2_9:32973319-32973391:-|nuORF	ENST00000379825.6_2_9:32973319-32973391:-|nuORF	ENST00000379825.6_2_9:32973319-32973391:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	547.8138427734375	2	547.813856	1093.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.77	1	56.606	56.106	57.106	-0.16431								0	0	0	0.25093	1	6315	6315		79.713	0	1				26574	13284	18343	18381	30612	30612					0.07009701023071102
ILLLSYVCN	9	Unmodified	_ILLLSYVCN_					0	0	0		nc|ENSG00000167139|Q8IYX1-2|TBC1D21;ENSG00000167139|ENST00000300504|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.8110961914062	2	519.288628	1036.5627	-0.53322	-0.00027689	-0.59586	-0.00030942	-1.1291	-0.00058632	519.79050734195	61.066	0.78087	60.852	60.493	61.274	-0.21339					43	20	3	0	0	0	0.024381	1	6985	6985		37.159	5.6293	1	828480			26575	7654	18344	18382	30613	30613					0.045884553737323586
ILLLVSLPSV	10	Unmodified	_ILLLVSLPSV_					0	0	0		ENST00000300146.9_1_11:59405566-59405851:-|nuORF	ENST00000300146.9_1_11:59405566-59405851:-|nuORF	ENST00000300146.9_1_11:59405566-59405851:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.286376953125	2	527.349543	1052.68453	-0.54918	-0.00028961	-2.6181	-0.0013807	-3.1673	-0.0016703	527.3480395865579	30.512	0.37126	30.587	30.337	30.708	0.074314					19	8	3	0	0	0	0.03519	1	1884	1884		15.642	0	1	62211			26576	11897	18345	18383	30614	30614					0.1602982072774921
ILLMPNAVAM	10	Unmodified	_ILLMPNAVAM_					0	0	0			REV__ENST00000472991.5_1_3:160117517-160120557:+|nuORF	REV__ENST00000472991.5_1_3:160117517-160120557:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3422241210938	2	536.798306	1071.58206	-0.80727	-0.00043334	0.12255	6.5785E-05	-0.68472	-0.00036756	536.7984472327051	50.418	0.97771	50.499	50.243	51.221	0.08099					106	26	6	0	0	0	0.03519	1	5208	5208		55.504	14.932	1	5002300	+		26577	33223	18346	18384	30615	30615					0.0491308839298199
ILLMPSSDCI	10	Unmodified	_ILLMPSSDCI_					0	0	0			REV__ENSG00000205328|ENST00000379665|OR6C65	REV__ENSG00000205328|ENST00000379665|OR6C65	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2762451171875	2	546.277403	1090.54025	-0.20048	-0.00010952	-2.799	-0.001529	-2.9995	-0.0016385	546.2758396528365	77.703	4.0541	77.441	77.06	81.114	-0.26202					197	96	3	0	0	0	0.65054	1	9347	9347		71.296	4.8664	1	1638500	+		26578	28672	18347	18385	30616	30616					-0.0013951208618436794
ILLNFFVL	8	Unmodified	_ILLNFFVL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2768859863281	2	489.804771	977.59499	-1.0555	-0.00051701	-2.9568	-0.0014483	-4.0124	-0.0019653	489.8031072569642	65.028	0.36092	65.028	64.763	65.124	0					14	9	2	0	0	0	0.027866	1	7640	7640		46.766	0	1	191270			26579	18271	18348	18386	30617	30617					0.105296108390462
ILLNKRGMLGY	11	Unmodified	_ILLNKRGMLGY_					0	0	0			REV__ENSG00000187764|ENST00000422704|SEMA4D	REV__ENSG00000187764|ENST00000422704|SEMA4D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.5862731933594	3	426.584797	1276.73256	0.48423	0.00020656	2.313	0.00098671	2.7973	0.0011933	426.5858264495261	18.49	1.0882	18.287	18.014	19.102	-0.20371					57	21	5	0	0	0	1.0429	1	316	316		27.047	0.29761	1	1436600	+		26580	27970	18349	18387	30618	30618					0.10526571376158245
ILLNNSHKLL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ILLNNSHKLL_					1	0	0		ENSG00000166840|ENST00000532726|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	603.8587646484375	2	603.86388	1205.71321	-0.94288	-0.00056937	-3.4977	-0.0021121	-4.4405	-0.0026815	604.3658714862372	99.02	1.5987	99.02	98.105	99.704	0					57	36	2	0	0	0	0.77808	1	12653	12653		62.107	14.148	1	145230			26581	7614	18350	18388	30619	30619					0.1185793835691129
ILLPIRVLL	9	Unmodified	_ILLPIRVLL_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566911.1_1_16:55543042-55559560:+|nuORF	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2808837890625	2	525.375895	1048.73724	-0.51632	-0.00027126	0.38126	0.00020031	-0.13505	-7.0954E-05	525.3761330652901	91.162	1.5979	91.15	90.28	91.878	-0.012383					59	37	2	0	0	0	0.024325	1	11509	11509		60.294	4.7898	1	291510			26582	1839	18351	18389	30620	30620					0.21481823581234494
ILLPPTGT	8	Unmodified	_ILLPPTGT_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.2484436035156	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0133	1	10981	10981		35.201	1.6851	1	123310000			26583	1055	18352	18390	30621	30621					0.07228185499855044
ILLPPTILPI	10	Unmodified	_ILLPPTILPI_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.316162109375	2	545.367736	1088.72092	-0.67912	-0.00037037	0.10885	5.9363E-05	-0.57027	-0.00031101	545.3677479601907	86.23	1.4404	86.184	85.575	87.016	-0.045105					60	33	2	0	0	0	0.03519	1	10787	10787		47.916	9.1095	1	108250			26584	876	18353	18391	30622	30622					0.1801069762448151
ILLPTRTL	8	Unmodified	_ILLPTRTL_					0	0	0		ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.7457275390625	2	463.805303	925.596052	-0.15992	-7.4173E-05	0.068424	3.1736E-05	-0.091499	-4.2438E-05	463.80513878272063	41.397	0.45845	41.262	40.985	41.443	-0.13553					20	11	2	0	0	0	0.027866	1	3667	3667		12.207	0	1	235650			26585	12664	18354	18392	30623	30623					0.13027825207950627
ILLPTRTL	8	Unmodified	_ILLPTRTL_					0	0	0		ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.805303	925.596052	0.070273	3.2593E-05	-1.2244	-0.00056788	-1.1541	-0.00053528	463.80460691703615	41.373	0.24239	41.373	41.153	41.396	0	0.026303	-0.0011262	NaN	23.042	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263650			26586	12664	18354	18392							0.13027825207950627
ILLPTRTL	8	Unmodified	_ILLPTRTL_					0	0	0		ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.805303	925.596052	0.07401	3.4326E-05	-0.51431	-0.00023854	-0.4403	-0.00020421	463.8049965920785	41.524	0.2407	41.401	41.189	41.43	-0.12318	0.054046	-0.00046749	NaN	23.042	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168420			26587	12664	18354	18392							0.13027825207950627
ILLPTRTL	8	Unmodified	_ILLPTRTL_					0	0	0		ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.805303	925.596052	-0.2882	-0.00013367	0.63662	0.00029527	0.34842	0.0001616	463.8052290280417	41.553	0.8116	41.325	40.888	41.699	-0.2278	-0.022052	0.00060012	NaN	23.042	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231880			26588	12664	18354	18392							0.13027825207950627
ILLPTRTL	8	Unmodified	_ILLPTRTL_					0	0	0		ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	ENST00000356260.9_1_4:76885294-76885342:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.805303	925.596052	-0.4142	-0.00019211	0.10846	5.0303E-05	-0.30574	-0.00014181	463.80523221533855	41.604	0.42273	41.374	41.157	41.58	-0.23029	0.026852	0.00011019	NaN	23.042	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283490			26589	12664	18354	18392							0.13027825207950627
ILLPWPPEV	9	Unmodified	_ILLPWPPEV_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	532.3076171875	2	532.312961	1062.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.621	1	70.621	70.121	71.121	0								0	0	0	0.058515	1	8537	8537		105.27	9.0784	1				26590	17112	18355	18393	30624	30624					0.08256692005124933
ILLQMEGIGIL	11	Unmodified	_ILLQMEGIGIL_					0	0	0			REV__ENST00000506345.5_1_5:137847134-137853282:-|nuORF	REV__ENST00000506345.5_1_5:137847134-137853282:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8685607910156	3	400.573787	1198.69953	7.7036	0.0030858	-1.2275	-0.00049169	6.4761	0.0025942	400.57321067182215	17.792	0.4078	17.852	17.686	18.094	0.06036					14	9	2	0	0	0	0.024851	1	182	182		19.263	9.6165	1	13475	+		26591	34024	18356	18394	30625	30625					0.10812944533449809
ILLQQRFVD	9	Unmodified	_ILLQQRFVD_					0	0	0			REV__ENST00000420415.5_2_3:195778645-195778717:-|nuORF	REV__ENST00000420415.5_2_3:195778645-195778717:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.2754516601562	2	566.329673	1130.64479	-1.7625	-0.00099815	1.4694	0.00083219	-0.29306	-0.00016597	566.3303368906397	59.951	0.63457	60.03	59.721	60.356	0.078888					46	16	4	0	0	0	0.024263	1	6839	6839		60.972	0	1	1524800	+		26592	32166	18357	18395	30626	30626					0.08469693777055909
ILLRNLLPY	9	Unmodified	_ILLRNLLPY_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.3319091796875	2	557.852784	1113.69102	0.38578	0.00021521	-4.1303	-0.0023041	-3.7445	-0.0020889	557.8503997042869	59.157	0.59377	58.916	58.583	59.177	-0.24165					26	14	2	0	0	0	0.024535	1	6541	6541		25.45	0	1	722230			26593	10074	18358	18396	30627	30627					0.13871758679147206
ILLRPLFAL	9	Unmodified	_ILLRPLFAL_					0	0	0			REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2737426757812	2	528.35242	1054.69029	-1.3522	-0.00071445	-1.3695	-0.00072359	-2.7217	-0.001438	528.3517165755488	92.066	1.2406	92.066	91.597	92.838	0					53	29	3	0	0	0	0.024354	1	11660	11660		30.504	13.139	1	175090	+		26594	30658	18359	18397	30628	30628					0.1651296403008473
ILLRPLFAL	9	Unmodified	_ILLRPLFAL_					0	0	0			REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2732543945312	2	528.35242	1054.69029	-0.66026	-0.00034885	-1.4581	-0.00077041	-2.1184	-0.0011193	528.3516139859802	92.168	1.2785	92.16	91.665	92.944	-0.0082855					44	30	2	0	0	0	0.024262	1	11663	11663		23.042	0	1	182270	+		26595	30658	18359	18397	30629	30629					0.1651296403008473
ILLRPLFAL	9	Unmodified	_ILLRPLFAL_					0	0	0			REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2730712890625	2	528.35242	1054.69029	0.37177	0.00019643	-3.5371	-0.0018689	-3.1654	-0.0016724	528.350382253809	92.012	1.4418	92.021	91.615	93.057	0.009407					54	34	3	0	0	0	0.024262	1	11609	11609		57.811	13.28	1	215240	+		26596	30658	18359	18397	30630	30630					0.1651296403008473
ILLRPLFAL	9	Unmodified	_ILLRPLFAL_					0	0	0			REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2737426757812	2	528.35242	1054.69029	-1.3732	-0.00072553	0.73384	0.00038773	-0.63934	-0.0003378	528.3527029183662	90.929	1.5195	90.774	90.475	91.994	-0.1552					44	35	2	0	0	0	0.024457	1	11266	11266		29.15	11.785	1	412290	+		26597	30658	18359	18397	30631	30631					0.1651296403008473
ILLRPLFAL	9	Unmodified	_ILLRPLFAL_					0	0	0			REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.35242	1054.69029	-0.84041	-0.00044403	0.35826	0.00018929	-0.48215	-0.00025475	528.3524839398607	90.925	1.0821	90.8	90.502	91.584	-0.12512	-0.012395	0.00028228	NaN	29.15	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327480	+		26598	30658	18359	18397							0.1651296403008473
ILLRPLFAL	9	Unmodified	_ILLRPLFAL_					0	0	0			REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	REV__ENST00000342992.10_3_2:179433745-179433817:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.35242	1054.69029	0.32127	0.00016974	-0.89053	-0.00047051	-0.56926	-0.00030077	528.3517377359572	91.002	0.86755	90.863	90.577	91.444	-0.13941	0.050355	-0.0010373	NaN	29.15	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307200	+		26599	30658	18359	18397							0.1651296403008473
ILLRPVAAPL	10	Unmodified	_ILLRPVAAPL_					0	0	0		ENST00000435688.1_1_22:42539301-42540546:-|nuORF	ENST00000435688.1_1_22:42539301-42540546:-|nuORF	ENST00000435688.1_1_22:42539301-42540546:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	531.855327	1061.6961	-0.67033	-0.00035652	0.12792	6.8037E-05	-0.5424	-0.00028848	531.855527034536	84.533	1.4109	84.559	84.249	85.66	0.026558					43	33	2	0	0	0	0.03519	1	10615	10615		16.473	0	1	209890			26600	14264	18360	18398	30632	30632					0.16772062541758714
ILLRQVLPP	9	Unmodified	_ILLRQVLPP_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-3|ARHGEF40;REV__ENST00000555232.5_1_14:21538555-21549271:+|nuORF	REV__ENST00000555232.5_1_14:21538555-21549271:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3032836914062	2	524.847502	1047.68045	1.8028	0.0009462	-2.5475	-0.0013371	-0.74471	-0.00039086	524.8461319188517	63.731	0.46288	63.785	63.592	64.054	0.054104					20	12	2	0	0	0	0.024412	1	7388	7388		31.955	0	1	284850	+		26601	36879;35004	18361	18399	30633	30633					0.15851776024715036
ILLSANSYI	9	Unmodified	_ILLSANSYI_					0	0	0			REV__nc|ENSG00000124467|Q9UQ74-3|PSG8	REV__nc|ENSG00000124467|Q9UQ74-3|PSG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2834777832031	2	497.2844	992.554247	-0.88151	-0.00043836	-3.3743	-0.001678	-4.2558	-0.0021163	497.2831963773478	81.842	1.2053	81.699	81.357	82.563	-0.14248					39	27	2	0	0	0	0.11848	1	9842	9842		106.42	1.6687	1	1286500	+		26602	22765	18362	18400	30634	30634					0.05767224728754172
ILLSEDPGR	9	Unmodified	_ILLSEDPGR_					0	0	0			REV__nc|ENSG00000161649|Q6UXG3-3|CD300LG	REV__nc|ENSG00000161649|Q6UXG3-3|CD300LG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.30450439453125	2	500.277106	998.53966	0.25234	0.00012624	0.18455	9.2324E-05	0.43689	0.00021856	500.27719859202404	58.375	0.73438	58.466	58.084	58.819	0.091217					37	19	3	0	0	0	0.024436	1	6586	6586		16.473	0	1	393770	+		26603	25394	18363	18401	30635	30635					0.040331525806209356
ILLSLYLVT	9	Unmodified	_ILLSLYLVT_					0	0	0		ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B;ENST00000589644.1_1_19:38798235-38799514:-|nuORF;ENST00000586319.5_1_19:38798235-38799736:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.8110961914062	2	517.828443	1033.64233	-0.76582	-0.00039656	-2.3343	-0.0012088	-3.1001	-0.0016053	517.827015659123	60.875	0.45003	60.662	60.384	60.834	-0.21339					15	11	2	0	0	0	0.024487	1	6985	6985		24.203	5.8783	1	116060			26604	7715	18364	18402	30636	30636					0.1268584531937904
ILLSSGALIF	10	Unmodified	_ILLSSGALIF_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A;SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.299560546875	2	517.318243	1032.62193	0.073888	3.8224E-05	2.0961	0.0010844	2.17	0.0011226	517.3191111316022	68.321	1.4221	68.029	67.588	69.01	-0.29267					100	35	5	0	0	0	0.03519	1	8137	8137		65.803	10.299	1	11301000			26605	7814	18365	18403	30637	30637					0.10692674659571821
ILLSSRPIV	9	Unmodified	_ILLSSRPIV_					0	0	0		ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-3|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.323974609375	2	499.32386	996.633166	1.7703	0.00088394	-2.3345	-0.0011657	-0.56427	-0.00028175	499.3226952178435	63.697	1.7933	63.751	63.41	65.203	0.054104					115	48	4	0	0	0	0.18915	1	7374	7374		90.777	5.8611	1	32941000			26606	5612	18366	18404	30638	30638					0.1347149675370929
ILLSSTIEV	9	Unmodified	_ILLSSTIEV_					0	0	0			REV__ENST00000533623.1_1_11:123988218-123988639:+|nuORF	REV__ENST00000533623.1_1_11:123988218-123988639:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79229736328125	2	487.792058	973.569563	-0.24082	-0.00011747	0.11959	5.8333E-05	-0.12124	-5.9139E-05	487.792085501976	78.306	1.7835	78.306	77.918	79.701	0					134	42	6	0	0	0	0.15889	1	9730	9730		97.473	6.696	1	11242000	+		26607	34612	18367	18405	30639	30639					0.08172091525955238
ILLSSTIEV	9	Unmodified	_ILLSSTIEV_					0	0	0			REV__ENST00000533623.1_1_11:123988218-123988639:+|nuORF	REV__ENST00000533623.1_1_11:123988218-123988639:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7919006347656	2	487.792058	973.569563	0.015184	7.4064E-06	-1.4384	-0.00070166	-1.4233	-0.00069425	487.79133905580403	96.734	1.8267	96.573	95.483	97.31	-0.16106					82	41	4	0	0	0	0.70186	1	11966	11966		45.952	1.8352	1	1065200	+		26608	34612	18367	18405	30640	30640					0.08172091525955238
ILLSTESGF	9	Unmodified	_ILLSTESGF_					0	0	0			REV__ENST00000565979.5_1_18:4264838-4293450:+|nuORF	REV__ENST00000565979.5_1_18:4264838-4293450:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2337341308594	2	483.760758	965.506963	-0.59364	-0.00028718	-4.2783	-0.0020697	-4.8719	-0.0023568	483.7592866911888	23.491	0.7101	23.567	23.156	23.866	0.076241					21	16	2	0	0	0	0.023528	1	829	829		50.025	4.0726	1	67322	+		26609	35290	18368	18406	30641	30641					0.022829454577731667
ILLSWSCDPS	10	Unmodified	_ILLSWSCDPS_					0	0	0			REV__ENST00000332499.3_1_17:43226364-43226442:+|nuORF	REV__ENST00000332499.3_1_17:43226364-43226442:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.8026733398438	2	560.7708	1119.52705	-0.53648	-0.00030084	0.66829	0.00037476	0.13181	7.3914E-05	560.7709455408573	62.06	0.46974	61.833	61.65	62.119	-0.22663					22	12	2	0	0	0	0.03519	1	7213	7213		44.117	0	1	387530	+		26610	30491	18369	18407	30642	30642					-0.02793626873926769
ILLTDRKFVF	10	Unmodified	_ILLTDRKFVF_					0	0	0			REV__IL1RAPL1|p.I194F|1|0.53|ENSG00000169306|chrX:29399185-29399185|A/T|missense_variant	REV__IL1RAPL1|p.I194F|1|0.53|ENSG00000169306|chrX:29399185-29399185|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.38037109375	2	626.376623	1250.73869	0.33644	0.00021074	4.4738	0.0028023	4.8103	0.003013	626.3792889018249	104.56	1.023	104.39	104.02	105.04	-0.16791					95	33	5	0	0	0	1.1237	1	13037	13037		31.53	5.9558	1	2470500	+		26611	36150	18370	18408	30643	30643					0.123354128793153
ILLTEQINL	9	Unmodified	_ILLTEQINL_					0	0	0		nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2;PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant;ENSG00000116793|ENST00000369604|PHTF1	nc|ENSG00000006576|Q8N3S3-3|PHTF2;PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.8179321289062	2	528.818607	1055.62266	-0.37916	-0.00020051	0.87129	0.00046075	0.49213	0.00026025	528.818487726817	82.849	0.9071	82.709	82.303	83.21	-0.14014					36	20	2	0	0	0	0.26966	1	9970	9970		79.713	2.9384	1	440730			26612	796;3579	18371	18409	30644	30644					0.09707469308614236
ILLTFSTG	8	Unmodified	_ILLTFSTG_					0	0	0		ENST00000520568.1_1_8:89198619-89339435:-|nuORF;nc|ENSG00000156103|P51512-2|MMP16;ENSG00000156103|ENST00000286614|MMP16	ENST00000520568.1_1_8:89198619-89339435:-|nuORF	ENST00000520568.1_1_8:89198619-89339435:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2464904785156	2	426.247286	850.48002	0.80944	0.00034502	-3.6413	-0.0015521	-2.8319	-0.0012071	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	0.93274	1	10632	10632		47.916	3.3845	1	12732000			26613	6512	18372	18410	30645	30645					0.04879881637248218
ILLTIDRYL	9	Unmodified	_ILLTIDRYL_					0	0	0		ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3;nc|ENSG00000121807|P41597|CCR2;ENSG00000121807|ENST00000445132|CCR2;ENSG00000160791|ENST00000292303|CCR5;ENSG00000163823|ENST00000296140|CCR1	ENSG00000183625|ENST00000395940|CCR3;ENSG00000121807|ENST00000445132|CCR2;ENSG00000160791|ENST00000292303|CCR5;ENSG00000163823|ENST00000296140|CCR1	ENSG00000160791|ENST00000292303|CCR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3384399414062	2	560.342249	1118.66995	-0.071418	-4.0019E-05	-3.7355	-0.0020932	-3.8069	-0.0021332	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	0.85329	1	12701	12701		35.618	4.0885	1	13448000			26614	9252;3889;6840;7153	18373	18411	30646	30646					0.11535748579603933
ILLTLGLSAM	10	Unmodified	_ILLTLGLSAM_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.3140869140625	2	516.312103	1030.60965	-0.26252	-0.00013554	3.4971	0.0018056	3.2346	0.0016701	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	1.0142	3	12542	12530;12542;12594		44.117	8.4985	1	33267000	+		26615	27885	18374	18412	30647;30648;30649	30648					0.09557314924882121
ILLTLGLSAM	10	Unmodified	_ILLTLGLSAM_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.3140258789062	2	516.312103	1030.60965	0.29486	0.00015224	2.9401	0.001518	3.2349	0.0016702	516.3135620168821	97.895	2.6352	97.906	97.149	99.785	0.010239					201	60	6	0	0	0	1.0665	3	12453	12453;12477;12489		37.159	5.2042	1	30092000	+		26616	27885	18374	18412	30650;30651;30652	30650					0.09557314924882121
ILLTLGLSAM	10	Unmodified	_ILLTLGLSAM_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.3142700195312	2	516.312103	1030.60965	0.22709	0.00011725	3.0016	0.0015498	3.2287	0.001667	516.313585376337	97.954	2.7122	97.952	97.189	99.901	-0.0020828					210	62	6	0	0	0	0.941	4	12496	12412;12447;12496;12521		51.335	12.162	1	31857000	+		26617	27885	18374	18412	30653;30654;30655;30656	30655					0.09557314924882121
ILLTLGLSAM	10	Unmodified	_ILLTLGLSAM_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3134155273438	2	516.312103	1030.60965	0.62813	0.00032431	2.0739	0.0010708	2.702	0.0013951	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	1.0541	2	12151	12120;12151		38.806	13.232	1	32395000	+		26618	27885	18374	18412	30657;30658	30658					0.09557314924882121
ILLTLGLSAM	10	Unmodified	_ILLTLGLSAM_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.3148803710938	2	516.312103	1030.60965	1.2467	0.00064367	1.4376	0.00074224	2.6842	0.0013859	516.3127200758097	98.004	2.6622	97.879	97.018	99.68	-0.12414					214	65	6	0	0	0	1.0665	2	12143	12101;12143		37.159	2.9866	1	30440000	+		26619	27885	18374	18412	30659;30660	30660					0.09557314924882121
ILLTLGLSAM	10	Unmodified	_ILLTLGLSAM_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3135986328125	2	516.312103	1030.60965	-0.060536	-3.1256E-05	2.6638	0.0013753	2.6033	0.0013441	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	1.1166	1	12144	12144		30.504	4.9296	1	29455000	+		26620	27885	18374	18412	30661	30661					0.09557314924882121
ILLTRFCA	8	Carbamidomethyl (C)	_ILLTRFC(Carbamidomethyl (C))A_	ILLTRFC(1)A		ILLTRFC(120)A		0	1	0			REV__ENST00000540438.5_1_11:113691037-113702685:-|nuORF	REV__ENST00000540438.5_1_11:113691037-113702685:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2833251953125	2	497.281137	992.547722	-0.056963	-2.8327E-05	3.2294	0.0016059	3.1724	0.0015776	497.2827894016265	81.853	1.2441	81.853	81.506	82.75	0					59	29	3	0	0	0	0.28298	1	10204	10204		119.22	13.952	1	2309000	+		26621	34746	18375	18413	30662	30662	455				0.051150082963886234
ILLTRHIG	8	Unmodified	_ILLTRHIG_					0	0	0			REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.7951354980469	2	461.795269	921.575986	0.13833	6.388E-05	0.0027701	1.2792E-06	0.1411	6.516E-05	461.7951259660024	18.441	0.59439	18.237	18.014	18.609	-0.20371					23	11	3	0	0	0	0.97924	1	306	306		40.573	3.4135	1	330800	+		26622	32765	18376	18414	30663	30663					0.11206074267988697
ILLTSCLVVQ	10	Unmodified	_ILLTSCLVVQ_					0	0	0			REV__ENSG00000241224|ENST00000622536|C3orf85	REV__ENSG00000241224|ENST00000622536|C3orf85	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.821044921875	2	544.822835	1087.63112	-0.37201	-0.00020268	-2.9062	-0.0015833	-3.2782	-0.001786	544.8211502325307	98.708	1.5546	98.708	98.317	99.871	0					87	35	3	0	0	0	0.02722	3	12604	12604;12626;12638		157.33	19.087	1	2869200	+		26623	28966	18377	18415	30664;30665;30666	30664					0.09080699953574367
ILLTSCLVVQ	10	Unmodified	_ILLTSCLVVQ_					0	0	0			REV__ENSG00000241224|ENST00000622536|C3orf85	REV__ENSG00000241224|ENST00000622536|C3orf85	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.821044921875	2	544.822835	1087.63112	-0.21682	-0.00011813	-2.7774	-0.0015132	-2.9942	-0.0016313	544.8210100253785	98.776	1.4681	98.772	98.39	99.858	-0.0038834					119	33	4	0	0	0	0.087538	3	12561	12527;12561;12587		138.83	21.922	1	3155200	+		26624	28966	18377	18415	30667;30668;30669	30668					0.09080699953574367
ILLTSCLVVQ	10	Unmodified	_ILLTSCLVVQ_					0	0	0			REV__ENSG00000241224|ENST00000622536|C3orf85	REV__ENSG00000241224|ENST00000622536|C3orf85	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.8212890625	2	544.822835	1087.63112	0.4339	0.0002364	-3.4443	-0.0018765	-3.0104	-0.0016401	544.820693758924	98.64	1.4015	98.504	98.233	99.635	-0.13625					62	33	3	0	0	0	0.23335	1	12213	12213		116.9	12.157	1	576460	+		26625	28966	18377	18415	30670	30670					0.09080699953574367
ILLTSCLVVQ	10	Unmodified	_ILLTSCLVVQ_					0	0	0			REV__ENSG00000241224|ENST00000622536|C3orf85	REV__ENSG00000241224|ENST00000622536|C3orf85	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.8214721679688	2	544.822835	1087.63112	0.92508	0.000504	-3.8238	-0.0020833	-2.8987	-0.0015793	544.8205090762251	98.64	1.3744	98.515	98.197	99.571	-0.12413					70	34	3	0	0	0	0.26127	1	12245	12245		113.41	20.216	1	834230	+		26626	28966	18377	18415	30671	30671					0.09080699953574367
ILLTSCLVVQ	10	Unmodified	_ILLTSCLVVQ_					0	0	0			REV__ENSG00000241224|ENST00000622536|C3orf85	REV__ENSG00000241224|ENST00000622536|C3orf85	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.8211059570312	2	544.822835	1087.63112	-0.59151	-0.00032227	-2.3397	-0.0012747	-2.9312	-0.001597	544.8212457030517	98.764	1.6467	98.596	98.113	99.759	-0.16863					109	39	4	0	0	0	0.16213	1	12210	12210		125.81	23.041	1	820000	+		26627	28966	18377	18415	30672	30672					0.09080699953574367
ILLTVSRPN	9	Unmodified	_ILLTVSRPN_					0	0	0			REV__ENST00000492618.5_1_7:56127237-56129562:+|nuORF	REV__ENST00000492618.5_1_7:56127237-56129562:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.8105163574219	2	506.811116	1011.60768	-0.5416	-0.00027449	0.54288	0.00027514	0.0012783	6.4785E-07	506.8112170970329	64.363	0.82664	64.107	63.716	64.542	-0.25563					45	20	4	0	0	0	0.12602	1	7291	7291		104.75	1.9732	1	2160000	+		26628	24507	18378	18416	30673	30673					0.1023402223128187
ILLVGVVV	8	Unmodified	_ILLVGVVV_					0	0	0			REV__ENSG00000168899|ENST00000306384|VAMP5	REV__ENSG00000168899|ENST00000306384|VAMP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2487487792969	2	406.286214	810.557876	0.93335	0.00037921	3.6282	0.0014741	4.5615	0.0018533	406.2881113373862	87.914	0.51075	87.778	87.516	88.027	-0.13613					20	12	3	0	0	0	0.027866	1	10707	10707		5.0869	0	1	246410	+		26629	26300	18379	18417	30674	30674					0.14501939293290889
ILLVKDVE	8	Unmodified	_ILLVKDVE_					0	0	0			REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.8130187988281	2	464.789318	927.564084	-0.99136	-0.00046078	0.68968	0.00032056	-0.30168	-0.00014022	464.7892214105277	38.063	0.2903	37.845	37.571	37.861	-0.21848					11	7	2	0	0	0	0.027866	1	3094	3094		35.618	5.1146	1	133300	+		26630	29732	18380	18418	30675	30675					0.09740412734140591
ILLVKDVE	8	Unmodified	_ILLVKDVE_					0	0	0			REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	REV__ENST00000265069.12_1_5:32354674-32354827:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.789318	927.564084	-1.5219	-0.00070735	0.57413	0.00026685	-0.94775	-0.0004405	464.79098090294576	37.82	0.33698	37.82	37.632	37.969	0	-0.012505	-5.988E-05	NaN	53.351	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166680	+		26631	29732	18380	18418							0.09740412734140591
ILLVTYLEN	9	Unmodified	_ILLVTYLEN_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.7982788085938	2	539.313158	1076.61176	-0.62703	-0.00033817	-0.32666	-0.00017617	-0.95369	-0.00051434	539.312861312353	97.258	0.62526	97.258	97.014	97.639	0					23	13	2	0	0	0	0.024487	1	12384	12384		17.365	0.89182	1	94518	+		26632	28824	18381	18419	30676	30676					0.07652066934338109
ILLVTYLEN	9	Unmodified	_ILLVTYLEN_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.313158	1076.61176	-0.025761	-1.3893E-05	-1.6202	-0.00087379	-1.646	-0.00088768	539.31209430524	97.265	0.53491	97.274	97.059	97.594	0.0089111	-0.056255	-0.00070005	NaN	37.159	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82564	+		26633	28824	18381	18419							0.07652066934338109
ILLWPTQLA	9	Unmodified	_ILLWPTQLA_					0	0	0		nc|ENSG00000203805|Q5VZY2-4|PLPP4	nc|ENSG00000203805|Q5VZY2-4|PLPP4	nc|ENSG00000203805|Q5VZY2-4|PLPP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7588500976562	2	527.81841	1053.62227	-0.74724	-0.00039441	0.79221	0.00041814	0.044967	2.3734E-05	527.8182371212206	80.783	1.8316	80.807	80.148	81.98	0.023903					99	44	3	0	0	0	0.024535	1	9937	9937		12.207	3.3845	1	774930			26634	18653	18382	18420	30677	30677					0.09760094379430484
ILLYLIRCL	9	Unmodified	_ILLYLIRCL_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3108520507812	2	560.351563	1118.68857	0.075842	4.2498E-05	-2.5302	-0.0014178	-2.4543	-0.0013753	560.350309637408	51.579	0.205	51.579	51.395	51.6	0					11	5	3	0	0	0	0.024517	1	5461	5461		26.796	11.154	1	273370	+		26635	27656	18383	18421	30678	30678					0.133975869498272
ILMCQKTEL	9	Unmodified	_ILMCQKTEL_					0	0	0		ENSG00000261649|ENST00000567390|GOLGA6L7	ENSG00000261649|ENST00000567390|GOLGA6L7	ENSG00000261649|ENST00000567390|GOLGA6L7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7874145507812	2	539.785395	1077.55624	-0.34692	-0.00018726	4.0774	0.0022009	3.7305	0.0020137	539.7874568088253	68.846	1.1104	68.553	68.092	69.202	-0.29267					80	28	4	0	0	0	0.31037	1	8233	8233		74.255	2.9593	1	4397400			26636	10954	18384	18422	30679	30679					0.020561941507139636
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.7672729492188	2	567.328619	1132.64269	-0.45822	-0.00025996	0.53994	0.00030632	0.081715	4.6359E-05	567.3287059024588	40.747	0.60321	40.612	40.381	40.985	-0.13553					34	15	3	0	0	0	0.024257	1	3566	3566		77.318	23.966	1	658060			26637	2886	18385	18423	30680	30680					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7674560546875	2	567.328619	1132.64269	-0.14154	-8.03E-05	0.2118	0.00012016	0.070255	3.9858E-05	567.328584153872	40.991	0.84687	40.763	40.508	41.355	-0.2278					41	21	3	0	0	0	0.024261	1	3592	3592		64.207	27.048	1	677120			26638	2886	18385	18423	30681	30681					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.7675170898438	2	567.328619	1132.64269	-1.0084	-0.00057209	1.0767	0.00061086	0.068339	3.8771E-05	567.3290444249559	41.02	0.68085	40.79	40.554	41.235	-0.23029					39	17	3	0	0	0	0.024319	1	3598	3598		66.429	34.474	1	698620			26639	2886	18385	18423	30682	30682					0.08166941767581193
ILMETWSF	8	Unmodified	_ILMETWSF_					0	0	0			REV__ENSG00000069018|ENST00000513104|TRPC7	REV__ENSG00000069018|ENST00000513104|TRPC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3235473632812	2	513.751879	1025.4892	1.3951	0.00071671	-3.9553	-0.002032	-2.5602	-0.0013153	514.2522501434311	74.213	0.34337	74.213	73.913	74.256	0					10	7	2	0	0	0	0.027866	1	9061	9061		26.796	1.3459	1	272030	+		26640	20395	18386	18424	30683	30683					-0.022520930687505825
ILMFFLGTR	9	Unmodified	_ILMFFLGTR_					0	0	0		ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2694091796875	2	549.312438	1096.61032	-0.67567	-0.00037115	-3.1533	-0.0017322	-3.829	-0.0021033	549.3099805734065	65.308	0.36495	65.057	64.905	65.27	-0.25112					11	8	2	0	0	0	0.024497	1	7459	7459		20.482	9.6163	1	118490			26641	13138	18387	18425	30684	30684					0.06588154364590082
ILMGHNADYI	10	Unmodified	_ILMGHNADYI_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.7860107421875	2	573.784241	1145.55393	0.92398	0.00053017	1.2037	0.00069067	2.1277	0.0012208	573.7848207369756	70.816	0.98943	70.524	70.2	71.189	-0.29291					59	25	3	0	0	0	1.0719	1	8504	8504		36.447	2.2742	1	2618500	+		26642	25494	18388	18426	30685	30685					-0.013025182627416143
ILMKLLDE	8	Unmodified	_ILMKLLDE_					0	0	0		ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1	ENSG00000090989|ENST00000381295|EXOC1	ENSG00000090989|ENST00000381295|EXOC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7762756347656	2	487.783179	973.551804	-0.17253	-8.4159E-05	-3.8518	-0.0018788	-4.0243	-0.001963	487.7811759612547	75.672	2.1121	75.414	74.408	76.521	-0.25866					112	51	3	0	0	0	0.42327	1	8948	8948		94.006	3.2298	1	3129600			26643	1946	18389	18427	30686	30686					0.063970529994549
ILMLDGINL	9	Unmodified	_ILMLDGINL_					0	0	0		ENST00000422447.7_1_11:18428940-18429036:+|nuORF	ENST00000422447.7_1_11:18428940-18429036:+|nuORF	ENST00000422447.7_1_11:18428940-18429036:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2794494628906	2	501.288628	1000.5627	-1.166	-0.00058448	1.1655	0.00058427	-0.00041694	-2.0901E-07	501.2894499229552	91.05	1.3065	91.05	90.553	91.86	0					40	30	2	0	0	0	0.024477	1	11465	11465		27.882	4.8398	1	337310			26644	14005	18390	18428	30687	30687					0.06244455373735036
ILMQKLPDI	9	Unmodified	_ILMQKLPDI_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.76416015625	2	535.817553	1069.62055	-0.65007	-0.00034832	4.0575	0.0021741	3.4075	0.0018258	535.819351742062	49.249	0.53588	49.149	48.88	49.416	-0.1008					26	13	3	0	0	0	0.024405	1	4928	4928		44.117	0	1	501120			26645	6362	18391	18429	30688	30688					0.08852717299168944
ILMSSMGER	9	Unmodified	_ILMSSMGER_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2540283203125	2	512.25172	1022.48889	-0.047938	-2.4556E-05	3.4243	0.0017541	3.3764	0.0017295	512.253584548123	54.26	2.8382	54.113	53.566	56.404	-0.14723					223	79	5	0	0	0	0.29158	2	5894	5882;5894		76.774	13.468	1	25579000			26646	9816	18392	18430	30689;30690	30690					-0.021458360602309767
ILMVGGSDGTL	11	Unmodified	_ILMVGGSDGTL_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7972412109375	2	531.778625	1061.5427	-0.7794	-0.00041447	-3.7903	-0.0020156	-4.5697	-0.0024301	531.7752291518077	93.729	0.23998	93.725	93.666	93.906	-0.0042038					8	5	2	0	0	0	0.024729	1	11884	11884		21.96	0	1	95248	+		26647	24298	18393	18431	30691	30691					0.014386596431450016
ILNARHINLTT	11	Unmodified	_ILNARHINLTT_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.369384765625	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.99553	1	12068	12068		37.812	3.639	1	9528000			26648	9957	18394	18432	30692	30692					0.1033955510006308
ILNAVKVTP	9	Unmodified	_ILNAVKVTP_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.789794921875	2	477.80276	953.590967	0.43304	0.00020691	-0.28198	-0.00013473	0.15106	7.2176E-05	477.8022293752379	53.171	0.47298	53.171	52.864	53.337	0					25	12	3	0	0	0	0.024495	1	5753	5753		19.997	4.355	1	239210			26649	3209	18395	18433	30693	30693					0.11231521345325746
ILNAVKVTP	9	Unmodified	_ILNAVKVTP_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.80276	953.590967	0.68712	0.00032831	0.61845	0.0002955	1.3056	0.0006238	477.8025444633562	53.133	0.30951	53.006	52.833	53.143	-0.12705	-0.1009	0.00041507	NaN	19.997	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89117			26650	3209	18395	18433							0.11231521345325746
ILNDEIITI	9	Unmodified	_ILNDEIITI_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.30517578125	2	522.30279	1042.59103	-0.82157	-0.00042911	0.73323	0.00038297	-0.088333	-4.6137E-05	522.3030669798815	82.681	0.94425	82.681	82.279	83.223	0					72	21	5	0	0	0	0.067814	4	10308	10308;10317;10329;10342		122.18	22.801	1	2719900			26651	11022	18396	18434	30694;30695;30696;30697	30694					0.0714347655466554
ILNDEIITI	9	Unmodified	_ILNDEIITI_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3030395507812	2	522.30279	1042.59103	1.6118	0.00084183	-1.7452	-0.0009115	-0.13339	-6.967E-05	522.3017840392192	82.772	0.85864	82.662	82.336	83.195	-0.11006					67	19	5	0	0	0	0.03849	2	10299	10299;10311		134.81	5.193	1	2883600			26652	11022	18396	18434	30698;30699	30698					0.0714347655466554
ILNDEIITI	9	Unmodified	_ILNDEIITI_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3047485351562	2	522.30279	1042.59103	-0.55657	-0.0002907	0.41266	0.00021553	-0.14391	-7.5165E-05	522.3029547247461	82.612	0.89951	82.637	82.273	83.172	0.025719					76	20	6	0	0	0	0.047345	2	10224	10224;10247		129.68	9.0616	1	3185400			26653	11022	18396	18434	30700;30701	30700					0.0714347655466554
ILNGMPISI	9	Unmodified	_ILNGMPISI_					0	0	0		ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27777099609375	2	479.275521	956.536489	0.70366	0.00033725	4.4553	0.0021353	5.1589	0.0024726	479.27737502520233	96.231	2.3544	96.108	95.378	97.732	-0.12305					131	53	5	0	0	0	0.4752	1	11905	11905		60.972	5.4677	1	1695100			26654	7802	18397	18435	30702	30702					0.05648186202256511
ILNGMPISI	9	Unmodified	_ILNGMPISI_					0	0	0		ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	479.275521	956.536489	0.24933	0.0001195	4.2906	0.0020564	4.5399	0.0021759	479.2774629464056	96.198	0.75041	96.198	95.821	96.571	0	0.0187	0.00013162	NaN	60.972	55	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2024100			26655	7802	18397	18435							0.05648186202256511
ILNGQLNLLK	10	Unmodified	_ILNGQLNLLK_					0	0	0			REV__ENSG00000184434|ENST00000380055|LRRC19	REV__ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3533935546875	2	563.353148	1124.69174	1.246	0.00070197	-0.74497	-0.00041968	0.50108	0.00028228	563.3523933939094	74.151	2.52	74.151	73.871	76.391	0					120	63	3	0	0	0	0.85955	1	9084	9084		56.721	0.088808	1	5884400	+		26656	27669	18398	18436	30703	30703					0.13438553328182934
ILNGQLNLLK	10	Unmodified	_ILNGQLNLLK_					0	0	0			REV__ENSG00000184434|ENST00000380055|LRRC19	REV__ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.3533325195312	2	563.353148	1124.69174	0.039323	2.2152E-05	0.33028	0.00018606	0.3696	0.00020822	563.3530233374349	74.444	2.3485	74.185	73.86	76.209	-0.25887					114	59	3	0	0	0	0.71272	1	9070	9070		66.429	16.396	1	5780100	+		26657	27669	18398	18436	30704	30704					0.13438553328182934
ILNGQLNLLK	10	Unmodified	_ILNGQLNLLK_					0	0	0			REV__ENSG00000184434|ENST00000380055|LRRC19	REV__ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.3530883789062	2	563.353148	1124.69174	-0.95285	-0.00053679	1.378	0.00077628	0.42511	0.00023949	563.3536482784735	74.197	2.2656	74.207	73.558	75.823	0.0096512					110	56	3	0	0	0	0.60198	1	8984	8984		76.774	2.6091	1	5676000	+		26658	27669	18398	18436	30705	30705					0.13438553328182934
ILNGTEWLN	9	Unmodified	_ILNGTEWLN_					0	0	0			REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2775268554688	2	530.277106	1058.53966	-1.0462	-0.00055476	1.1384	0.00060365	0.092211	4.8897E-05	530.2771408953049	80.4	0.97697	80.4	80.12	81.097	0					58	23	4	0	0	0	0.10174	1	9990	9990		110.12	19.75	1	1919900	+		26659	32222	18399	18437	30706	30706					0.012731525806202626
ILNGTEWLN	9	Unmodified	_ILNGTEWLN_					0	0	0			REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2777709960938	2	530.277106	1058.53966	-1.293	-0.00068567	1.5146	0.00080314	0.22152	0.00011747	530.2772742143383	80.578	0.94865	80.426	79.966	80.915	-0.15169					63	22	4	0	0	0	0.10174	2	9989	9977;9989		110.12	11.527	1	1626500	+		26660	32222	18399	18437	30707;30708	30708					0.012731525806202626
ILNGTEWLN	9	Unmodified	_ILNGTEWLN_					0	0	0			REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.27783203125	2	530.277106	1058.53966	-0.8715	-0.00046214	0.85095	0.00045124	-0.020547	-1.0895E-05	530.2771434763347	80.382	0.62674	80.404	80.146	80.773	0.021446					44	14	4	0	0	0	0.15366	1	9917	9917		98.629	2.5958	1	1761900	+		26661	32222	18399	18437	30709	30709					0.012731525806202626
ILNGTEWLN	9	Unmodified	_ILNGTEWLN_					0	0	0			REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	REV__ENST00000423538.6_1_1:156182331-156182481:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	530.277106	1058.53966	-1.293	-0.00068567	1.5146	0.00080314	0.22152	0.00011747	530.2772742143383	80.578	0.94865	80.426	79.966	80.915	-0.15169	0.01593	0.00044835	NaN	110.12	63	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1626500	+		26662	32222	18399	18437							0.012731525806202626
ILNHRIGLN	9	Unmodified	_ILNHRIGLN_					0	0	0		ENST00000341861.9_1_15:65804713-65804842:-|nuORF	ENST00000341861.9_1_15:65804713-65804842:-|nuORF	ENST00000341861.9_1_15:65804713-65804842:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3194580078125	2	525.314358	1048.61416	-1.6389	-0.00086095	3.5535	0.0018667	1.9146	0.0010058	525.3162354505854	65.035	0.74523	64.773	64.494	65.239	-0.2626					44	19	4	0	0	0	0.024436	1	7611	7611		16.473	0	1	2517900			26663	12501	18400	18438	30710	30710					0.09179960182655122
ILNILRYF	8	Unmodified	_ILNILRYF_					0	0	0		ENST00000399503.3_1_5:56191784-56191889:+|nuORF	ENST00000399503.3_1_5:56191784-56191889:+|nuORF	ENST00000399503.3_1_5:56191784-56191889:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2875366210938	2	526.318577	1050.6226	-0.80367	-0.00042298	0.70982	0.00037359	-0.093842	-4.9391E-05	526.3188091094727	68.61	0.40455	68.348	68.103	68.507	-0.26166					16	9	2	0	0	0	0.027866	1	7901	7901		13.775	0	1	224180			26664	13647	18401	18439	30711	30711					0.09931514099253036
ILNKHIKM	8	Unmodified	_ILNKHIKM_					0	0	0			REV__ENST00000469673.1_1_22:31822577-31829954:+|nuORF	REV__ENST00000469673.1_1_22:31822577-31829954:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.8039855957031	2	498.80478	995.595007	-0.29606	-0.00014768	-1.9662	-0.00098075	-2.2623	-0.0011284	498.8036455447494	52.863	1.3878	52.673	52.389	53.777	-0.18982					105	37	5	0	0	0	0.97924	1	5565	5565		40.573	11.423	1	10595000	+		26665	27787	18402	18440	30712	30712					0.09703287567390362
ILNLHQVLD	9	Unmodified	_ILNLHQVLD_					0	0	0			REV__ENST00000435844.3_2_20:18548090-18550131:+|nuORF	REV__ENST00000435844.3_2_20:18548090-18550131:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.3079833984375	2	532.808574	1063.60259	0.47364	0.00025236	1.2135	0.00064657	1.6871	0.00089893	532.808854512292	71.179	1.5589	70.89	70.459	72.018	-0.28858					122	39	6	0	0	0	0.75397	1	8559	8559		42.396	1.618	1	3231400	+		26666	32449	18403	18441	30713	30713					0.07333718368658992
ILNLQVQV	8	Unmodified	_ILNLQVQV_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7882995605469	2	463.78711	925.559667	0.69134	0.00032063	-0.63638	-0.00029515	0.054954	2.5487E-05	463.7866923026978	70.808	1.1213	70.808	70.483	71.604	0					65	27	4	0	0	0	0.75307	1	8554	8554		62.978	2.0065	1	6074700			26667	8174	18404	18442	30714	30714					0.0939094831123839
ILNLQVQV	8	Unmodified	_ILNLQVQV_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7875671386719	2	463.78711	925.559667	0.97648	0.00045288	-0.9771	-0.00045317	-0.00061882	-2.87E-07	463.7865642315273	71.188	1.3287	70.899	70.546	71.875	-0.28857					72	33	4	0	0	0	0.75307	1	8557	8557		62.978	2.6845	1	6749200			26668	8174	18404	18442	30715	30715					0.0939094831123839
ILNLQVQV	8	Unmodified	_ILNLQVQV_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.78778076171875	2	463.78711	925.559667	0.61242	0.00028403	-0.63001	-0.00029219	-0.01759	-8.1582E-06	463.786713180117	70.89	1.3658	70.901	70.55	71.916	0.010735					73	34	4	0	0	0	0.75307	1	8481	8481		62.978	2.6845	1	5401900			26669	8174	18404	18442	30716	30716					0.0939094831123839
ILNLTQRREH	10	Unmodified	_ILNLTQRREH_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2645568847656	3	427.245832	1278.71567	-0.85966	-0.00036729	1.8657	0.00079711	1.006	0.00042982	427.24579307012533	54.54	0.29662	54.54	54.461	54.757	0					13	8	2	0	0	0	0.03519	1	5966	5966		19.263	5.7547	1	129480	+		26670	27578	18405	18443	30717	30717					0.08745786814574785
ILNLVLLVKV	10	Unmodified	_ILNLVLLVKV_					0	0	0			REV__ENSG00000185274|ENST00000333538|GALNT17	REV__ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2687377929688	2	562.394285	1122.77402	0.24461	0.00013757	-1.7143	-0.00096409	-1.4697	-0.00082653	562.8967830883147	79.75	0.2485	79.531	79.411	79.659	-0.21922					8	5	2	0	0	0	0.03519	1	9543	9543		14.865	3.9993	1	49898	+		26671	27749	18406	18444	30718	30718					0.21754075407125129
ILNMLREYL	9	Unmodified	_ILNMLREYL_					0	0	0		ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.822509765625	2	582.825909	1163.63727	-1.3693	-0.00079808	-1.5111	-0.00088072	-2.8804	-0.0016788	582.8249458423519	78.32	1.6548	78.32	77.792	79.447	0					117	39	4	0	0	0	0.27161	1	9737	9737		79.451	5.196	1	3513000			26672	7257	18407	18445	30719	30719					0.06199218185133759
ILNNINTII	9	Unmodified	_ILNNINTII_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;XPO1|p.D612N|1|0.14|ENSG00000082898|chr2:61492088-61492088|C/T|missense_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.31103515625	2	514.310949	1026.60735	-0.4498	-0.00023133	0.13482	6.9338E-05	-0.31498	-0.000162	514.310942307805	78.673	0.79671	78.673	78.363	79.16	0					41	18	4	0	0	0	0.16468	1	9750	9750		96.19	5.4138	1	770540			26673	1742	18408	18446	30720	30720					0.09510602511431898
ILNNINTII	9	Unmodified	_ILNNINTII_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;XPO1|p.D612N|1|0.14|ENSG00000082898|chr2:61492088-61492088|C/T|missense_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.310949	1026.60735	0.013405	6.8942E-06	-0.30206	-0.00015535	-0.28865	-0.00014846	514.3106944449494	78.82	0.751	78.628	78.298	79.049	-0.1921	-0.044967	-0.00036052	NaN	96.19	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757210			26674	1742	18408	18446							0.09510602511431898
ILNNINTII	9	Unmodified	_ILNNINTII_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;XPO1|p.D612N|1|0.14|ENSG00000082898|chr2:61492088-61492088|C/T|missense_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.310949	1026.60735	-0.55008	-0.00028291	0.29671	0.0001526	-0.25336	-0.00013031	514.310973435489	78.699	0.79163	78.717	78.441	79.233	0.018677	0.044616	0.00025539	NaN	96.19	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748080			26675	1742	18408	18446							0.09510602511431898
ILNPLLTLL	9	Unmodified	_ILNPLLTLL_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.3356018066406	2	505.336436	1008.65832	0.8984	0.00045399	-2.5892	-0.0013084	-1.6908	-0.00085442	505.33480632119654	107.35	0.58939	107.35	106.88	107.47	0					30	14	3	0	0	0	0.12602	1	13794	13794		104.75	16.992	1	302790			26676	991	18409	18447	30721	30721					0.15433551556270686
ILNPLLTLL	9	Unmodified	_ILNPLLTLL_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MSMS	OPSCC_39_ClassI_Rep-3	3	505.33575439453125	2	505.336436	1008.65832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.47	1	107.47	106.97	107.97	0.0026703								0	0	0	0.17581	1	13714	13714		76.774	7.9873	1				26677	991	18409	18447	30722	30722					0.15433551556270686
ILNPYNLFL	9	Unmodified	_ILNPYNLFL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.R177Q|1|0.28|ENSG00000117139|chr1:202773164-202773164|C/T|missense_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3207397460938	2	553.815867	1105.61718	0.18387	0.00010183	-0.27399	-0.00015174	-0.090119	-4.9909E-05	553.8156754881362	100.29	1.2323	100.29	100.01	101.24	0					58	29	4	0	0	0	0.015769	6	12809	12809;12813;12823;12835;12847;12859		157.99	30.099	1	2668500			26678	3610	18410	18448	30723;30724;30725;30726;30727;30728	30723					0.06859790516796238
ILNPYNLFL	9	Unmodified	_ILNPYNLFL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.R177Q|1|0.28|ENSG00000117139|chr1:202773164-202773164|C/T|missense_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8152465820312	2	553.815867	1105.61718	-0.39476	-0.00021862	0.47787	0.00026465	0.083114	4.603E-05	553.8160705486157	100.3	1.1041	100.31	99.942	101.05	0.010117					58	27	5	0	0	0	0.015769	6	12781	12770;12781;12793;12805;12817;12833		157.99	42.947	1	2454700			26679	3610	18410	18448	30729;30730;30731;30732;30733;30734	30730					0.06859790516796238
ILNPYNLFL	9	Unmodified	_ILNPYNLFL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.R177Q|1|0.28|ENSG00000117139|chr1:202773164-202773164|C/T|missense_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8157348632812	2	553.815867	1105.61718	0.23251	0.00012877	-0.18622	-0.00010313	0.046293	2.5638E-05	553.815732604414	100.37	0.64706	100.36	100.12	100.76	-0.0050888					41	16	4	0	0	0	0.0146	6	12760	12740;12749;12760;12772;12784;12793		200.96	62.131	1	2850000			26680	3610	18410	18448	30735;30736;30737;30738;30739;30740	30737					0.06859790516796238
ILNQLVQRS	9	Unmodified	_ILNQLVQRS_					0	0	0			REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7630004882812	2	535.819473	1069.62439	-0.39369	-0.00021095	0.17167	9.1984E-05	-0.22202	-0.00011896	535.8193218671935	49.523	0.53544	49.244	49.011	49.547	-0.27977					21	13	2	0	0	0	0.024541	1	4957	4957		31.955	0	1	609210	+		26681	36053	18411	18449	30741	30741					0.09236523117237994
ILNQSLLEY	9	Unmodified	_ILNQSLLEY_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2777709960938	2	546.800414	1091.58628	-0.75406	-0.00041232	-0.56965	-0.00031149	-1.3237	-0.00072381	546.7999577633876	62.424	0.39093	62.166	61.936	62.327	-0.25824					17	9	2	0	0	0	0.024495	1	7001	7001		26.693	4.733	1	469910	+		26682	23460	18412	18450	30742	30742					0.04414592411899321
ILNSCTDLMK	10	Unmodified	_ILNSCTDLMK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000541712.5_1_12:123343395-123344723:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.8023681640625	2	569.28576	1136.55697	0.24902	0.00014176	-0.45073	-0.0002566	-0.20171	-0.00011483	569.2869220763732	82.025	0.27893	81.915	81.765	82.043	-0.11006					18	6	4	0	0	0	0.03519	1	10199	10199		90.37	22.876	1	182350			26683	4460	18413	18451	30743	30743					-0.005850112002462993
ILNSIWSH	8	Unmodified	_ILNSIWSH_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2773132324219	2	485.261259	968.507966	-0.41691	-0.00020231	-3.5917	-0.0017429	-4.0086	-0.0019452	485.25932299176435	41.851	1.2237	41.874	41.564	42.787	0.023006					64	34	3	0	0	0	0.027866	1	3806	3806		24.203	0	1	5473200			26684	4094	18414	18452	30744	30744					0.022452046173157214
ILNSTTIEI	9	Unmodified	_ILNSTTIEI_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2864685058594	2	502.28714	1002.55973	0.66652	0.00033479	-0.91451	-0.00045935	-0.24799	-0.00012456	502.28662559028606	71.069	0.77951	71.069	70.787	71.566	0					71	19	5	0	0	0	0.013065	4	8598	8598;8608;8620;8634		171.53	53.031	1	6117200			26685	18271	18415	18453	30745;30746;30747;30748	30745					0.05854903520571497
ILNSTTIEI	9	Unmodified	_ILNSTTIEI_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.28558349609375	2	502.28714	1002.55973	0.62031	0.00031157	-0.78449	-0.00039404	-0.16419	-8.2469E-05	502.286679286374	71.433	0.81075	71.145	70.802	71.613	-0.28858					61	20	4	0	0	0	0.014454	3	8609	8609;8619;8630		185.55	63.374	1	6678600			26686	18271	18415	18453	30749;30750;30751	30749					0.05854903520571497
ILNSTTIEI	9	Unmodified	_ILNSTTIEI_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.28656005859375	2	502.28714	1002.55973	0.12164	6.11E-05	-0.1845	-9.2671E-05	-0.062855	-3.1571E-05	502.2869877733859	71.137	0.76141	71.148	70.854	71.616	0.010735					61	19	4	0	0	0	0.014034	4	8536	8526;8536;8547;8560		204.62	73.593	1	6640900			26687	18271	18415	18453	30752;30753;30754;30755	30753					0.05854903520571497
ILNSTTIEI	9	Unmodified	_ILNSTTIEI_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.28714	1002.55973	0.23659	0.00011884	-1.7256	-0.00086674	-1.489	-0.0007479	502.2867165026234	71.527	0.46165	71.252	71.011	71.473	-0.27509	0.10748	-0.0012068	NaN	171.53	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284090			26688	18271	18415	18453							0.05854903520571497
ILNSTTIEI	9	Unmodified	_ILNSTTIEI_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.28714	1002.55973	-0.0064405	-3.235E-06	-0.52145	-0.00026192	-0.52789	-0.00026515	502.28698065933395	71.4	0.53687	71.138	70.867	71.403	-0.26199	-0.0056341	2.7929E-06	NaN	171.53	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354810			26689	18271	18415	18453							0.05854903520571497
ILNSTTIEI	9	Unmodified	_ILNSTTIEI_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.28714	1002.55973	0.40316	0.0002025	-1.0462	-0.00052547	-0.643	-0.00032297	502.28680597174474	71.319	0.50507	71.113	70.877	71.382	-0.20614	-0.031188	-0.00052432	NaN	171.53	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255760			26690	18271	18415	18453							0.05854903520571497
ILNTFETY	8	Unmodified	_ILNTFETY_					0	0	0		ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7538757324219	2	500.752933	999.491313	-0.55367	-0.00027725	0.16834	8.4299E-05	-0.38533	-0.00019296	500.75303341647356	69.301	0.91151	69.079	68.685	69.597	-0.22245					89	21	6	0	0	0	0.56067	1	8009	8009		79.939	3.0926	1	7778800			26691	6607	18416	18454	30756	30756					-0.008453410592892396
ILNTQITDI	9	Unmodified	_ILNTQITDI_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7905883789062	2	515.792589	1029.57063	0.19521	0.00010069	0.71071	0.00036658	0.90591	0.00046726	515.7927762435289	52.454	1.0963	52.306	51.777	52.873	-0.14723					43	28	2	0	0	0	0.42604	1	5619	5619		64.207	0.901	1	1859100			26692	5635	18417	18455	30757	30757					0.057023058948516336
ILNVDLLKLEV	11	Unmodified	_ILNVDLLKLEV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.597900390625	3	423.598989	1267.77514	0.38561	0.00016335	-3.5242	-0.0014929	-3.1386	-0.0013295	423.59744864865075	104.43	0.77576	104.43	104.07	104.85	-0.0032196					57	20	5	0	0	0	1.0483	1	13318	13318		17.167	0	1	692680			26693	6055	18418	18456	30758	30758					0.15196244985372687
ILNVFPAP	8	Unmodified	_ILNVFPAP_					0	0	0		nc|ENSG00000152291|O43493-7|TGOLN2	nc|ENSG00000152291|O43493-7|TGOLN2	nc|ENSG00000152291|O43493-7|TGOLN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.24798583984375	2	435.757821	869.501089	0.96034	0.00041848	-4.1571	-0.0018115	-3.1967	-0.001393	435.75598026150544	71.05	0.70872	71.05	70.744	71.453	0					33	17	3	0	0	0	0.027866	1	8591	8591		44.531	7.5026	1	390000			26694	18385	18419	18457	30759	30759					0.06111891736748021
ILNVIDSHS	9	Unmodified	_ILNVIDSHS_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80078125	2	499.269281	996.52401	-0.24357	-0.00012161	-2.0068	-0.0010019	-2.2504	-0.0011235	499.2682683807752	31.597	0.36037	31.666	31.445	31.805	0.068962					10	8	2	0	0	0	0.024506	1	2042	2042		23.042	0	1	53188	+		26695	24762	18420	18458	30760	30760					0.025608660635725755
ILNVLIKLL	9	Unmodified	_ILNVLIKLL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.822509765625	2	519.867903	1037.72125	-1.056	-0.00054899	-2.6519	-0.0013786	-3.7079	-0.0019276	519.8650370118455	81.271	0.6056	81.295	80.929	81.534	0.023911					26	13	3	0	0	0	0.024466	1	10036	10036		33.516	0.70317	1	144230			26696	1825	18421	18459	30761	30761					0.2039011734432279
ILPAVLFISN	10	Unmodified	_ILPAVLFISN_					0	0	0			REV__nc|ENSG00000187486|Q14654-2|KCNJ11	REV__nc|ENSG00000187486|Q14654-2|KCNJ11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.302734375	2	543.831517	1085.64848	-0.44415	-0.00024154	-0.3374	-0.00018349	-0.78155	-0.00042503	543.8311001383645	74.82	1.0263	74.561	74.368	75.395	-0.25887					55	25	4	0	0	0	0.03519	1	9124	9124		49.442	0	1	1222200	+		26697	27933	18422	18460	30762	30762					0.10908363550902322
ILPCAGAGR	9	Unmodified	_ILPCAGAGR_					0	0	0		nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.23590087890625	2	429.23673	856.458907	1.2967	0.00055658	-3.3341	-0.0014311	-2.0374	-0.00087453	429.2352134037268	63.824	0.93853	63.824	63.373	64.311	0					70	25	4	0	0	0	0.75282	1	7503	7503		42.474	8.9589	1	2046000			26698	18313	18423	18461	30763	30763					0.02493593056726695
ILPCAGAGR	9	Unmodified	_ILPCAGAGR_					0	0	0		nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	429.23673	856.458907	2.0351	0.00087352	-4.1706	-0.0017902	-2.1355	-0.00091665	429.2348440722733	63.816	0.96873	63.862	63.329	64.298	0.045502	0.063096	-0.0010176	NaN	42.474	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1905400			26699	18313	18423	18461							0.02493593056726695
ILPCAGAGR	9	Unmodified	_ILPCAGAGR_					0	0	0		nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	429.23673	856.458907	0.2635	0.0001131	-2.6548	-0.0011396	-2.3913	-0.0010264	429.2355308372752	63.989	0.89499	63.761	63.328	64.223	-0.22773	-0.037871	0.00028363	NaN	42.474	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1073000			26700	18313	18423	18461							0.02493593056726695
ILPCAGAGR	9	Unmodified	_ILPCAGAGR_					0	0	0		nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	429.23673	856.458907	0.27943	0.00011994	-2.6186	-0.001124	-2.3391	-0.001004	429.2355197490552	63.979	0.89177	63.786	63.342	64.234	-0.19243	-0.012351	0.00031477	NaN	42.474	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1102900			26701	18313	18423	18461							0.02493593056726695
ILPCAGAGR	9	Unmodified	_ILPCAGAGR_					0	0	0		nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	nc|ENSG00000137404|Q8IXM6-6|NRM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	429.23673	856.458907	0.41543	0.00017832	-2.8952	-0.0012427	-2.4797	-0.0010644	429.2354030075264	64.01	0.79771	63.752	63.352	64.15	-0.25824	-0.046935	7.7318E-05	NaN	42.474	53	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1110500			26702	18313	18423	18461							0.02493593056726695
ILPCGLCGKV	10	Unmodified	_ILPCGLCGKV_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2904357910156	2	501.777373	1001.54019	0.82472	0.00041383	2.3117	0.0011599	3.1364	0.0015738	501.778445300446	97.93	0.85233	97.928	97.456	98.309	-0.0020828					33	19	2	0	0	0	0.03519	1	12454	12454		21.96	9.753	1	172030			26703	2135	18424	18462	30764	30764					0.03948532704464469
ILPDDFPPI	9	Unmodified	_ILPDDFPPI_					0	0	0			REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	REV__ENST00000553112.5_1_12:113834968-113841579:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.777099609375	2	513.778951	1025.54335	-0.61749	-0.00031725	-2.7533	-0.0014146	-3.3707	-0.0017318	513.7772310336056	102.5	0.47264	102.5	102.26	102.73	0					31	10	4	0	0	0	0.36105	1	13134	13134		68.485	4.2774	1	678310	+		26704	23511	18425	18463	30765	30765					0.031598223544506254
ILPDTHLLDP	10	Unmodified	_ILPDTHLLDP_					0	0	0		ENSG00000130304|ENST00000252595|SLC27A1;nc|ENSG00000130304|Q6PCB7-2|SLC27A1	ENSG00000130304|ENST00000252595|SLC27A1	ENSG00000130304|ENST00000252595|SLC27A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.7344360351562	2	567.313689	1132.61282	0.49304	0.00027971	1.308	0.00074202	1.801	0.0010217	567.3142634046294	59.184	0.9205	58.943	58.422	59.342	-0.24165					28	22	2	0	0	0	0.03519	1	6570	6570		35.618	0.41757	1	102400			26705	4409	18426	18464	30766	30766					0.05182281303223135
ILPEDHLLLA	10	Unmodified	_ILPEDHLLLA_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3305053710938	2	567.331882	1132.64921	-0.10765	-6.1074E-05	-3.625	-0.0020566	-3.7326	-0.0021176	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.1129	1	10824	10824		17.365	0.64758	1	5896300			26706	1253	18427	18465	30767	30767					0.0881915819995811
ILPEMAIL	8	Unmodified	_ILPEMAIL_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2685852050781	2	450.267164	898.519776	-0.032553	-1.4657E-05	3.9215	0.0017657	3.8889	0.0017511	450.26891668657606	49.282	1.0247	49.13	48.719	49.743	-0.15277					50	27	2	0	0	0	0.67787	1	5048	5048		69.093	0.30614	1	8769300	+		26707	28047	18428	18466	30768	30768					0.06645685316300387
ILPEPNRNAL	10	Unmodified	_ILPEPNRNAL_					0	0	0		ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2677612304688	2	568.824755	1135.63496	0.28694	0.00016322	-0.6217	-0.00035364	-0.33476	-0.00019042	568.8243934355183	18.466	0.39657	18.262	18.064	18.46	-0.20371					11	7	3	0	0	0	0.03519	1	312	312		29.15	0	1	14382			26708	4013	18429	18467	30769	30769					0.07256505771647426
ILPFQHHGY	9	Unmodified	_ILPFQHHGY_					0	0	0		nc|ENSG00000204179|Q4JDL3-12|PTPN20;nc|ENSG00000204179|Q4JDL3-14|PTPN20;nc|ENSG00000204179|Q4JDL3-8|PTPN20;nc|ENSG00000204179|Q4JDL3-7|PTPN20	nc|ENSG00000204179|Q4JDL3-12|PTPN20	nc|ENSG00000204179|Q4JDL3-12|PTPN20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.3073120117188	2	556.287808	1110.56106	0.28298	0.00015742	3.5598	0.0019803	3.8428	0.0021377	556.2885791820868	67.439	3.4468	67.462	66.517	69.963	0.023903					212	87	5	0	0	0	0.024443	1	8289	8289		19.36	4.6959	1	2760900			26709	18656	18430	18468	30770	30770					0.010205823999967834
ILPHLIIYY	9	Unmodified	_ILPHLIIYY_					0	0	0		ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000272067.10_2_2:272273-275200:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.2860717773438	2	572.841885	1143.66922	-0.64138	-0.00036741	-3.1692	-0.0018154	-3.8105	-0.0021828	572.8399946601277	64.529	0.67389	64.266	64.012	64.686	-0.2626					44	17	4	0	0	0	0.024475	1	7539	7539		39.021	2.5747	1	985230			26710	11647	18431	18469	30771	30771					0.10312953930565527
ILPHLIIYY	9	Unmodified	_ILPHLIIYY_					0	0	0		ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000272067.10_2_2:272273-275200:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	572.841885	1143.66922	-0.18312	-0.0001049	-3.8018	-0.0021778	-3.9849	-0.0022827	572.8396509779941	64.25	0.66382	64.25	63.99	64.654	0	-0.018337	-0.00017995	NaN	39.021	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022900			26711	11647	18431	18469							0.10312953930565527
ILPKIGGN	8	Unmodified	_ILPKIGGN_					0	0	0		nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.24481201171875	2	406.255446	810.496338	0.36028	0.00014637	3.7134	0.0015086	4.0737	0.0016549	406.2568595630925	34.77	1.1507	34.555	34.267	35.418	-0.21556					39	28	2	0	0	0	0.027866	1	2714	2714		12.207	0	1	147730			26712	18196	18432	18470	30772	30772					0.08351007593989834
ILPKIGGN	8	Unmodified	_ILPKIGGN_					0	0	0		nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2187194824219	2	406.255446	810.496338	-0.85257	-0.00034636	4.2713	0.0017352	3.4187	0.0013889	406.25691839864913	45.702	1.0418	45.499	45.259	46.3	-0.20226					38	28	2	0	0	0	0.027866	1	4458	4458		18.324	10.634	1	259230			26713	18196	18432	18470	30773	30773					0.08351007593989834
ILPKIGGN	8	Unmodified	_ILPKIGGN_					0	0	0		nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2187194824219	2	406.255446	810.496338	-0.52747	-0.00021429	4.0076	0.0016281	3.4801	0.0014138	406.25697525059303	46.737	1.5119	46.543	45.938	47.45	-0.19387					77	41	3	0	0	0	0.027866	1	4458	4458		18.324	10.634	1	1153200			26714	18196	18432	18470	30774	30774					0.08351007593989834
ILPKPLTK	8	Unmodified	_ILPKPLTK_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.7817687988281	2	455.310221	908.605889	0.69409	0.00031603	-0.60681	-0.00027629	0.087285	3.9742E-05	455.3097976030608	67.514	0.7504	67.259	66.87	67.62	-0.25517					37	17	3	0	0	0	0.027866	1	7744	7744		27.882	2.4321	1	692870			26715	5705	18433	18471	30775	30775					0.1479301321330695
ILPLQPPTV	9	Unmodified	_ILPLQPPTV_					0	0	0			REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2920227050781	2	489.305136	976.595718	-0.33584	-0.00016433	0.08403	4.1116E-05	-0.25181	-0.00012321	489.305172150006	60.952	0.67531	60.952	60.619	61.295	0					23	17	2	0	0	0	0.024405	1	6981	6981		35.618	5.1146	1	148150	+		26716	35924	18434	18472	30776	30776					0.1064840548808661
ILPLSGQAKV	10	Unmodified	_ILPLSGQAKV_					0	0	0			REV__FGD1|p.R866G|1|0.28|ENSG00000102302|chrX:54446399-54446399|G/C|missense_variant	REV__FGD1|p.R866G|1|0.28|ENSG00000102302|chrX:54446399-54446399|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.3240966796875	2	513.321317	1024.62808	0.67662	0.00034732	3.7044	0.0019016	4.381	0.0022489	513.3230185400292	96.83	0.93877	96.693	96.346	97.285	-0.13671					41	20	4	0	0	0	1.0344	1	11981	11981		41.427	0.85399	1	285400	+		26717	36038	18435	18473	30777	30777					0.11675192891084407
ILPMLCNY	8	Carbamidomethyl (C)	_ILPMLC(Carbamidomethyl (C))NY_	ILPMLC(1)NY		ILPMLC(75)NY		0	1	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.254150390625	2	512.253731	1022.49291	-0.65531	-0.00033569	-0.94354	-0.00048333	-1.5989	-0.00081902	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.61897	1	5843	5843		74.517	19.752	1	53582000			26718	10221	18436	18474	30778	30778	142				-0.017437465665466334
ILPPKKTI	8	Unmodified	_ILPPKKTI_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.7818908691406	2	455.310221	908.605889	-0.36843	-0.00016775	0.5015	0.00022834	0.13306	6.0585E-05	455.31033649863184	67.415	0.71147	67.177	66.838	67.549	-0.23814					34	16	3	0	0	0	0.027866	1	7748	7748		47.916	5.4411	1	802010	+		26719	20079	18437	18475	30779	30779					0.14793013213318318
ILPQLPEQL	9	Unmodified	_ILPQLPEQL_					0	0	0		ENST00000379477.5_1_13:41835952-41837434:-|nuORF;ENST00000498245.1_1_13:41835952-41837531:-|nuORF	ENST00000379477.5_1_13:41835952-41837434:-|nuORF	ENST00000379477.5_1_13:41835952-41837434:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.276123046875	2	525.813325	1049.6121	-0.53266	-0.00028008	0.2861	0.00015044	-0.24656	-0.00012964	525.8132081716825	94.09	0.68473	94.09	93.79	94.474	-0.00023651					36	16	3	0	0	0	0.024447	1	11981	11981		40.778	0	1	590730			26720	13266	18438	18476	30780	30780					0.08927486654192762
ILPRIVNY	8	Unmodified	_ILPRIVNY_					0	0	0		chr11:102779361-102780487|315|40.31|0.15|8.09|-|1|MMP10,MMP10|1	chr11:102779361-102780487|315|40.31|0.15|8.09|-|1|MMP10,MMP10|1	chr11:102779361-102780487|315|40.31|0.15|8.09|-|1|MMP10,MMP10|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2917175292969	2	494.302927	986.591301	2.3511	0.0011622	1.1423	0.00056462	3.4934	0.0017268	494.30312059913297	18.841	0.59417	18.598	18.374	18.968	-0.24256					22	11	3	0	0	0	0.027866	1	311	311		14.664	6.4328	1	24889			26721	306	18439	18477	30781	30781					0.09746941065168357
ILPSFTLN	8	Unmodified	_ILPSFTLN_					0	0	0			REV__ENST00000361362.6_1_5:178322903-178343648:+|nuORF	REV__ENST00000361362.6_1_5:178322903-178343648:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2430725097656	2	452.760561	903.506569	-0.041458	-1.877E-05	0.45716	0.00020699	0.41571	0.00018822	452.7610240608321	53.912	0.46148	53.765	53.493	53.954	-0.14723					17	12	2	0	0	0	0.027866	1	5863	5863		26.796	1.3459	1	184080	+		26722	30939	18440	18478	30782	30782					0.05095570528578719
ILPSLNEVDH	10	Unmodified	_ILPSLNEVDH_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2677001953125	2	568.800946	1135.58734	-0.069872	-3.9743E-05	-3.4697	-0.0019736	-3.5396	-0.0020133	568.7991171916215	23.929	0.21684	23.749	23.607	23.824	-0.17989					6	4	2	0	0	0	0.03519	1	977	977		34.173	0	1	41516			26723	4485	18441	18479	30783	30783					0.024968067808231353
ILPSVQVPP	9	Unmodified	_ILPSVQVPP_					0	0	0			REV__ENST00000505852.1_1_4:667184-668117:-|nuORF	REV__ENST00000505852.1_1_4:667184-668117:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7879638671875	2	475.289485	948.564418	0.33315	0.00015834	0.42956	0.00020416	0.76271	0.00036251	475.289297978579	59.92	0.6691	59.72	59.463	60.132	-0.20016					25	17	2	0	0	0	0.024436	1	6818	6818		30.504	8.5438	1	679140	+		26724	26311	18442	18480	30784	30784					0.08807832453999254
ILPSVQVPP	9	Unmodified	_ILPSVQVPP_					0	0	0			REV__ENST00000505852.1_1_4:667184-668117:-|nuORF	REV__ENST00000505852.1_1_4:667184-668117:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.289485	948.564418	1.3749	0.00065348	-1.3347	-0.00063438	0.040186	1.91E-05	475.2888051929057	59.994	0.37574	59.797	59.499	59.874	-0.19742	0.054147	-0.0014226	NaN	56.721	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87964	+		26725	26311	18442	18480							0.08807832453999254
ILPTLVRLL	9	Unmodified	_ILPTLVRLL_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.3579711914062	2	519.357702	1036.70085	0.29166	0.00015148	-0.054231	-2.8166E-05	0.23743	0.00012331	519.357529803463	82.285	1.0392	82.065	81.785	82.824	-0.22015					56	23	3	0	0	0	0.17822	2	9911	9898;9911		93.195	21.9	1	1433800			26726	9139	18443	18481	30785;30786	30786					0.1839694668451557
ILPTLVRLL	9	Unmodified	_ILPTLVRLL_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.357666015625	2	519.357702	1036.70085	0.34456	0.00017895	-0.28099	-0.00014594	0.063564	3.3012E-05	519.3574278250842	82.317	1.1227	82.136	81.856	82.979	-0.18079					63	25	4	0	0	0	0.45795	1	9924	9924		62.107	8.756	1	1136600			26727	9139	18443	18481	30787	30787					0.1839694668451557
ILPVGITGRE	10	Unmodified	_ILPVGITGRE_					0	0	0			REV__ENST00000590135.5_1_19:36233501-36233795:-|nuORF	REV__ENST00000590135.5_1_19:36233501-36233795:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2735595703125	2	527.816399	1053.61824	-0.62949	-0.00033226	1.384	0.00073052	0.75454	0.00039826	528.3187899611909	91.763	0.21651	91.751	91.618	91.835	-0.012383					7	4	2	0	0	0	0.03519	1	11601	11601		53.351	9.2347	1	29811	+		26728	31995	18444	18482	30788	30788					0.09358004885734772
ILPVPVVF	8	Unmodified	_ILPVPVVF_					0	0	0		nc|ENSG00000072041|Q9H2J7-3|SLC6A15;ENSG00000072041|ENST00000266682|SLC6A15	nc|ENSG00000072041|Q9H2J7-3|SLC6A15	nc|ENSG00000072041|Q9H2J7-3|SLC6A15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2310485839844	2	442.286214	882.557876	-0.13773	-6.0914E-05	-4.0985	-0.0018127	-4.2362	-0.0018736	442.28430892243205	46.745	0.50552	46.551	46.38	46.886	-0.19387					27	14	2	0	0	0	0.027866	1	4560	4560		43.626	28.761	1	525860			26729	1463	18445	18483	30789	30789					0.11189939293285533
ILQADKLWVI	10	Unmodified	_ILQADKLWVI_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	3	400.244658	1197.71214	1.8021	0.00072127	-0.40327	-0.00016141	1.3988	0.00055986	400.244833508406	21.98	0.87061	22.052	21.637	22.508	0.071487					26	17	3	0	0	0	0.03519	1	676	676		38.754	0	1	56741	+		26730	24611;36769	18446	18484	30790	30790					0.12119723987984798
ILQALDLPAKD	11	Unmodified	_ILQALDLPAKD_					0	0	0		ENSG00000213023|ENST00000600079|SYT3	ENSG00000213023|ENST00000600079|SYT3	ENSG00000213023|ENST00000600079|SYT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.8500366210938	2	598.847896	1195.68124	-0.41013	-0.0002456	4.0834	0.0024453	3.6733	0.0021997	598.8502279932983	96.846	0.98072	96.685	96.375	97.356	-0.16106					54	21	4	0	0	0	0.79111	1	11960	11960		58.23	1.5977	1	886690			26731	10487	18447	18485	30791	30791					0.0912252588307183
ILQCKKSVI	9	Unmodified	_ILQCKKSVI_					0	0	0			REV__ZNF540|p.M149Cfs*12|1|0.2|ENSG00000171817|chr19:37611719-37611719|A/-|frameshift_variant	REV__ZNF540|p.M149Cfs*12|1|0.2|ENSG00000171817|chr19:37611719-37611719|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3162841796875	2	516.31772	1030.62089	0.18735	9.6733E-05	-2.4117	-0.0012452	-2.2244	-0.0011485	516.8186612768842	21.481	0.71918	21.303	21.016	21.735	-0.17721					36	14	5	0	0	0	0.024541	1	719	719		19.997	8.4858	1	565270	+		26732	37809	18448	18486	30792	30792					0.10680137019016911
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.8185424804688	2	537.818941	1073.62333	-0.8451	-0.00045451	0.27646	0.00014869	-0.56864	-0.00030582	537.8190905066859	67.023	0.85977	67.023	66.63	67.49	0					49	20	4	0	0	0	0.053401	1	7988	7988		127.46	0	1	1750300			26733	4147	18449	18487	30793	30793					0.08946308748318188
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.818941	1073.62333	-0.74692	-0.00040171	0.083701	4.5016E-05	-0.66322	-0.00035669	537.8190057421377	67.381	0.88605	67.092	66.707	67.593	-0.28834	0.01209	-0.00013615	NaN	127.46	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2181800			26734	4147	18449	18487							0.08946308748318188
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.818941	1073.62333	-0.74914	-0.0004029	0.38255	0.00020574	-0.36659	-0.00019716	537.8191438179639	67.089	0.97433	67.112	66.812	67.786	0.023911	0.032368	0.0001853	NaN	127.46	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1737500			26735	4147	18449	18487							0.08946308748318188
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.818941	1073.62333	0.14523	7.8105E-05	-0.66259	-0.00035635	-0.51736	-0.00027825	537.8187965757446	67.32	0.6271	67.07	66.916	67.543	-0.25044	-0.010489	-0.00093889	NaN	127.46	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474470			26736	4147	18449	18487							0.08946308748318188
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.818941	1073.62333	-0.64733	-0.00034815	0.25305	0.0001361	-0.39428	-0.00021205	537.819043773657	67.347	0.66479	67.124	66.858	67.523	-0.22374	0.043641	4.6008E-05	NaN	127.46	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679330			26737	4147	18449	18487							0.08946308748318188
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant;ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	SNRPN|p.G136Dfs*6|1|0.22|ENSG00000128739|chr15:24977012-24977012|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.818941	1073.62333	-1.1813	-0.00063533	0.64275	0.00034568	-0.53857	-0.00028965	537.8192796724867	67.297	0.54036	67.059	66.838	67.378	-0.23814	-0.020944	0.00046518	NaN	127.46	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	624180			26738	4147	18449	18487							0.08946308748318188
ILQDQRLDD	9	Unmodified	_ILQDQRLDD_					0	0	0			REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2999877929688	2	558.288202	1114.56185	-0.091025	-5.0818E-05	0.018385	1.0264E-05	-0.07264	-4.0554E-05	558.7897276641602	68.39	0.1962	68.097	67.936	68.132	-0.29267					6	4	2	0	0	0	0.024263	1	8161	8161		60.972	8.0352	1	105220	+		26739	20606	18450	18488	30794	30794					0.009153322583642876
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.816650390625	2	549.81693	1097.61931	-0.55085	-0.00030287	0.90951	0.00050006	0.35866	0.0001972	549.816699489576	47.699	0.65907	47.546	47.265	47.924	-0.15301					49	19	4	0	0	0	0.025498	1	4775	4775		145.16	29.662	1	5723000			26740	2008	18451	18489	30795	30795					0.07440219254613112
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	549.81693	1097.61931	-0.60458	-0.00033241	1.1038	0.0006069	0.49925	0.0002745	549.8167801217745	47.512	0.78986	47.512	47.181	47.971	0	0.012577	0.0011134	NaN	145.16	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5876800			26741	2008	18451	18489							0.07440219254613112
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.81693	1097.61931	-1.338	-0.00073565	1.8608	0.0010231	0.52277	0.00028743	549.8171619031456	47.478	0.68108	47.537	47.247	47.929	0.059097	0.037249	0.0019458	NaN	145.16	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6751100			26742	2008	18451	18489							0.07440219254613112
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.81693	1097.61931	-0.32579	-0.00017913	-0.46967	-0.00025823	-0.79546	-0.00043736	549.8167352309953	47.509	0.65688	47.412	47.161	47.818	-0.096653	-0.087368	-0.00061685	NaN	145.16	58	17	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1422000			26743	2008	18451	18489							0.07440219254613112
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.81693	1097.61931	-0.30201	-0.00016605	0.079702	4.3821E-05	-0.22231	-0.00012223	549.8167064056541	47.829	0.54488	47.553	47.268	47.812	-0.27598	0.053246	-1.2738E-05	NaN	145.16	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376900			26744	2008	18451	18489							0.07440219254613112
ILQDRLNQV	9	Unmodified	_ILQDRLNQV_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.81693	1097.61931	-0.012722	-6.9948E-06	-0.0057755	-3.1755E-06	-0.018497	-1.017E-05	549.8165893236624	47.624	0.6635	47.437	47.199	47.863	-0.18684	-0.062156	-0.00010673	NaN	145.16	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1638800			26745	2008	18451	18489							0.07440219254613112
ILQEKLQEI	9	Unmodified	_ILQEKLQEI_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.3263549804688	2	557.329339	1112.64412	0.13481	7.5131E-05	-0.88176	-0.00049143	-0.74696	-0.0004163	557.3285767221022	53.861	1.1618	53.861	53.16	54.321	0					69	32	4	0	0	0	0.025498	1	5848	5848		145.16	7.0933	1	3368300			26746	1170	18452	18490	30796	30796					0.0923085433732922
ILQEKLQEI	9	Unmodified	_ILQEKLQEI_					0	0	0		nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	nc|ENSG00000054267|Q4LE39-2|ARID4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.32568359375	2	557.329339	1112.64412	-0.43239	-0.00024098	-0.31311	-0.00017451	-0.7455	-0.00041549	557.3289557495871	53.935	0.92196	53.787	53.42	54.342	-0.14724					75	25	5	0	0	0	0.034407	1	5836	5836		138.06	6.4462	1	2954300			26747	1170	18452	18490	30797	30797					0.0923085433732922
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.2311706542969	3	407.2313	1218.67207	0.32371	0.00013183	-0.47365	-0.00019289	-0.14994	-6.106E-05	407.2311239310656	43.351	0.87174	43.351	43.038	43.91	0					81	23	5	0	0	0	0.77768	1	4071	4071		40.778	0.71999	1	7609100			26748	1686;4257;37903	18453	18491	30798	30798					0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	407.2316589355469	3	407.2313	1218.67207	-0.19815	-8.0694E-05	0.045437	1.8503E-05	-0.15272	-6.2191E-05	407.2313325614673	43.601	0.89928	43.456	43.094	43.994	-0.14471					80	24	5	0	0	0	0.5973	2	4070	4070;4082		52.937	6.4799	1	6556600			26749	1686;4257;37903	18453	18491	30799;30800	30799					0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.2310791015625	3	407.2313	1218.67207	1.589	0.0006471	-1.8362	-0.00074775	-0.24714	-0.00010065	407.2305444554242	43.461	0.91105	43.492	43.191	44.102	0.030823					75	24	5	0	0	0	0.18994	2	4026	4013;4026		90.601	30.67	1	6812000			26750	1686;4257;37903	18453	18491	30801;30802	30802					0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	407.2313	1218.67207	0.015414	6.2772E-06	-0.42004	-0.00017105	-0.40462	-0.00016477	407.23111133672376	43.518	1.0864	43.406	43.109	44.195	-0.11253	-0.045375	-2.8082E-05	NaN	90.601	88	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7839700			26751	1686;4257;37903	18453	18491							0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	407.2313	1218.67207	-0.24307	-9.8986E-05	-0.30753	-0.00012523	-0.5506	-0.00022422	407.23115092257933	43.707	1.0963	43.47	43.061	44.158	-0.23737	0.018837	0.00010937	NaN	90.601	82	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7430200			26752	1686;4257;37903	18453	18491							0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	407.2313	1218.67207	-0.98573	-0.00040142	0.33676	0.00013714	-0.64897	-0.00026428	407.2314314413858	43.751	1.0013	43.532	43.211	44.212	-0.21939	0.080971	0.00089649	NaN	90.601	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6951200			26753	1686;4257;37903	18453	18491							0.07148177317412774
ILQERKRG	8	Unmodified	_ILQERKRG_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2774353027344	2	500.306532	998.598512	0.14264	7.1364E-05	-2.6496	-0.0013256	-2.5069	-0.0012542	500.30422471399004	61.067	0.37529	61.067	60.958	61.334	0					16	9	2	0	0	0	0.027866	1	7039	7039		40.573	5.3719	1	542180	+		26754	26603	18454	18492	30803	30803					0.09915673665614122
ILQEVTAG	8	Unmodified	_ILQEVTAG_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2122497558594	2	415.734543	829.454533	-0.13264	-5.5142E-05	1.444	0.00060031	1.3113	0.00054517	415.73511675141896	28.004	0.39108	28	27.808	28.199	-0.0042019					16	9	2	0	0	0	0.027866	1	1599	1599		30.504	14.03	1	80166			26755	6636	18455	18493	30804	30804					0.03298407114800739
ILQEVTAG	8	Unmodified	_ILQEVTAG_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	415.734543	829.454533	-0.81208	-0.00033761	0.93312	0.00038793	0.12105	5.0323E-05	415.7348590038145	28.144	0.52415	27.899	27.677	28.202	-0.24524	-0.0023314	-0.00012633	NaN	38.806	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268780			26756	6636	18455	18493							0.03298407114800739
ILQEVTAG	8	Unmodified	_ILQEVTAG_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	415.734543	829.454533	-0.83237	-0.00034604	1.4219	0.00059115	0.58958	0.00024511	415.73498545677325	28.021	0.51992	27.852	27.528	28.048	-0.16869	-0.049287	0.00028011	NaN	38.806	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213110			26757	6636	18455	18493							0.03298407114800739
ILQEVTAG	8	Unmodified	_ILQEVTAG_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	415.734543	829.454533	-0.095412	-3.9666E-05	0.41857	0.00017401	0.32316	0.00013435	415.7346808602933	28.007	0.55261	27.855	27.61	28.162	-0.15195	-0.046475	-0.00055417	NaN	38.806	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276090			26758	6636	18455	18493							0.03298407114800739
ILQHAALF	8	Unmodified	_ILQHAALF_					0	0	0			REV__ENST00000382031.5_1_15:43812898-43813209:+|nuORF	REV__ENST00000382031.5_1_15:43812898-43813209:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7557373046875	2	456.76872	911.522887	-0.031639	-1.4452E-05	-0.87529	-0.00039981	-0.90693	-0.00041426	456.7665105165626	32.776	0.77105	32.542	32.302	33.073	-0.23377					53	18	4	0	0	0	0.027866	1	2256	2256		29.842	0	1	1447600	+		26759	31533	18456	18494	30805	30805					0.06358696485324344
ILQHAALF	8	Unmodified	_ILQHAALF_					0	0	0			REV__ENST00000382031.5_1_15:43812898-43813209:+|nuORF	REV__ENST00000382031.5_1_15:43812898-43813209:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.75396728515625	2	456.76872	911.522887	0.20847	9.5222E-05	-1.0926	-0.00049905	-0.88409	-0.00040382	456.76635859844447	32.788	1.0929	32.595	32.162	33.255	-0.19261					77	26	5	0	0	0	0.027866	1	2269	2269		69.093	19.882	1	1508800	+		26760	31533	18456	18494	30806	30806					0.06358696485324344
ILQKPTKSK	9	Unmodified	_ILQKPTKSK_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7659301757812	2	521.834591	1041.65463	0.44372	0.00023155	2.7253	0.0014222	3.169	0.0016537	521.8360056813298	79.022	0.45953	78.791	78.563	79.023	-0.23141					19	10	2	0	0	0	0.024511	1	9423	9423		25.574	0	1	61568	+		26761	21420	18457	18495	30807	30807					0.13546881782417586
ILQLEYVGGI	10	Unmodified	_ILQLEYVGGI_					0	0	0		ENSG00000099937|ENST00000215727|SERPIND1	ENSG00000099937|ENST00000215727|SERPIND1	ENSG00000099937|ENST00000215727|SERPIND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.2928466796875	2	552.818607	1103.62266	1.0822	0.00059826	-0.94875	-0.00052449	0.13346	7.3777E-05	552.817814087605	98.671	0.66826	98.547	98.285	98.953	-0.12413					34	15	3	0	0	0	0.03519	1	12216	12216		51.335	29.376	1	93959			26762	2098	18458	18496	30808	30808					0.07499469308618245
ILQLHFIW	8	Unmodified	_ILQLHFIW_					0	0	0			REV__chr19:43176148-43184782|145|13.07|0.3|5.45|-|1|PSG5,PSG5|1	REV__chr19:43176148-43184782|145|13.07|0.3|5.45|-|1|PSG5,PSG5|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8004150390625	2	535.313295	1068.61204	-0.99441	-0.00053232	4.4767	0.0023965	3.4823	0.0018641	535.3156977821105	55.3	0.23139	55.154	55.057	55.288	-0.14609					11	6	3	0	0	0	0.027866	1	5918	5918		35.201	0	1	107810	+		26763	19395	18459	18497	30809	30809					0.08047531444844935
ILQLKSEL	8	Unmodified	_ILQLKSEL_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2952575683594	2	472.294768	942.574983	0.28647	0.0001353	0.97136	0.00045877	1.2578	0.00059407	472.29507689125336	55.222	0.84925	55.072	54.711	55.56	-0.15036					69	23	5	0	0	0	0.44658	1	6077	6077		90.777	2.1338	1	3852400			26764	1369	18460	18498	30810	30810					0.10139815108414041
ILQLLSVP	8	Unmodified	_ILQLLSVP_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7877502441406	2	441.786579	881.558604	-0.73639	-0.00032533	3.7839	0.0016717	3.0475	0.0013464	441.78816325900505	40.674	1.7833	40.537	40.09	41.874	-0.13704					126	47	4	0	0	0	0.96719	1	3508	3508		42.474	7.2737	1	20144000	+		26765	23169	18461	18499	30811	30811					0.11308733942325944
ILQLRNQGE	9	Unmodified	_ILQLRNQGE_					0	0	0		ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23	ENSG00000094880|ENST00000394886|CDC23	ENSG00000094880|ENST00000394886|CDC23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.80078125	2	535.80128	1069.58801	-0.9597	-0.00051421	0.092715	4.9677E-05	-0.86699	-0.00046453	535.8010522118469	55.245	1.1906	55.099	54.533	55.723	-0.14609					72	32	4	0	0	0	0.75397	1	5905	5905		42.396	4.5846	1	5092700			26766	2009	18462	18500	30812	30812					0.05599646220525756
ILQLTHEF	8	Unmodified	_ILQLTHEF_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7404479980469	2	500.776742	999.538931	-0.27671	-0.00013857	-3.3813	-0.0016933	-3.658	-0.0018318	500.7749772099264	40.99	0.67855	40.763	40.366	41.044	-0.2278					23	17	2	0	0	0	0.027866	1	3601	3601		76.847	8.3619	1	231630	+		26767	24559	18463	18501	30813	30813					0.03914357931569157
ILQLVKLGAMR	11	Unmodified	_ILQLVKLGAMR_					0	0	0			REV__ENSG00000149428|ENST00000617285|HYOU1	REV__ENSG00000149428|ENST00000617285|HYOU1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3929443359375	2	621.391751	1240.76895	0.38115	0.00023684	1.5699	0.0009755	1.951	0.0012123	621.3925178018	103.51	0.68594	103.34	103.12	103.81	-0.17034					47	16	4	0	0	0	1.0483	1	12879	12879		25.574	1.0549	1	476900	+		26768	24675	18464	18502	30814	30814					0.15819448272827685
ILQNGFVQA	9	Unmodified	_ILQNGFVQA_					0	0	0			REV__ENST00000496784.1_1_7:141255266-141296442:+|nuORF	REV__ENST00000496784.1_1_7:141255266-141296442:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.3227233886719	2	495.274367	988.53418	1.3169	0.00065225	-1.8795	-0.00093088	-0.56259	-0.00027863	495.2740486276116	64.186	0.24748	64.186	63.99	64.238	0					9	6	2	0	0	0	0.024506	1	7541	7541		16.473	0	1	82423	+		26769	19832	18465	18503	30815	30815					0.03945473788803611
ILQNKAEEL	9	Unmodified	_ILQNKAEEL_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8075561523438	2	529.298039	1056.58152	-0.32293	-0.00017093	-4.2114	-0.0022291	-4.5343	-0.0024	529.2951544426766	50.328	0.56892	50.176	49.924	50.493	-0.1512					38	16	3	0	0	0	0.024495	1	5193	5193		34.173	1.3601	1	411740	+		26770	22148	18466	18504	30816	30816					0.0554970826913177
ILQNKIDLV	9	Unmodified	_ILQNKIDLV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000487075.1_1_X:24073085-24080702:+|nuORF	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3268432617188	2	528.326599	1054.63865	-0.48559	-0.00025655	0.65258	0.00034478	0.167	8.8228E-05	528.3267937329216	57.834	1.1713	57.925	57.683	58.855	0.091217					63	31	3	0	0	0	0.03201	1	6456	6456		139.97	21.227	1	5939000			26771	4449	18467	18505	30817	30817					0.11351175545519254
ILQNKIDLV	9	Unmodified	_ILQNKIDLV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000487075.1_1_X:24073085-24080702:+|nuORF	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.326599	1054.63865	-0.56825	-0.00030022	0.72677	0.00038397	0.15852	8.3751E-05	528.3268422207344	57.928	0.99948	57.928	57.68	58.679	0	-0.019673	-0.00016956	NaN	139.97	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4613600			26772	4449	18467	18505							0.11351175545519254
ILQNKIDLV	9	Unmodified	_ILQNKIDLV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000487075.1_1_X:24073085-24080702:+|nuORF	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.326599	1054.63865	-1.0216	-0.00053975	1.2745	0.00067336	0.25289	0.00013361	528.3271214758247	58.164	1.0174	57.989	57.788	58.805	-0.1749	0.041936	0.00040921	NaN	139.97	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5009700			26773	4449	18467	18505							0.11351175545519254
ILQNLGLLF	9	Unmodified	_ILQNLGLLF_					0	0	0		nc|ENSG00000196950|Q9ULF5-2|SLC39A10;ENST00000430412.5_1_2:196521853-196599762:+|nuORF;ENSG00000196950|ENST00000359634|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.281982421875	2	515.81841	1029.62227	-0.13798	-7.1175E-05	-2.9715	-0.0015327	-3.1095	-0.0016039	516.3185495357721	66.104	0.11623	65.831	65.758	65.874	-0.27282					4	2	2	0	0	0	0.024517	1	7825	7825		26.796	0	1	21994			26774	9938	18468	18506	30818	30818					0.10864094379394373
ILQPALHLL	9	Unmodified	_ILQPALHLL_					0	0	0		PRIMPOL|p.D198H|1|0.06|ENSG00000164306|chr4:184672208-184672208|G/C|missense_variant	PRIMPOL|p.D198H|1|0.06|ENSG00000164306|chr4:184672208-184672208|G/C|missense_variant	PRIMPOL|p.D198H|1|0.06|ENSG00000164306|chr4:184672208-184672208|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.803955078125	2	509.326402	1016.63825	-0.12376	-6.3032E-05	-1.5185	-0.00077339	-1.6422	-0.00083643	509.82704953747907	83.295	0.30304	83.156	82.995	83.298	-0.1386					9	6	2	0	0	0	0.024443	1	10035	10035		26.796	0	1	30418			26775	18993	18469	18507	30819	30819					0.13059800616315442
ILQPRLVE	8	Unmodified	_ILQPRLVE_					0	0	0			REV__ENSG00000138303|ENST00000672957|ASCC1	REV__ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.30035400390625	2	484.300384	966.586216	-0.20791	-0.00010069	-0.083279	-4.0332E-05	-0.29119	-0.00014102	484.3003784064443	60.118	1.5345	59.941	59.629	61.164	-0.1761					117	38	6	0	0	0	0.99042	1	6694	6694		38.806	5.2906	1	23066000	+		26776	23838	18470	18508	30820	30820					0.10158637202562204
ILQQHIATV	9	Unmodified	_ILQQHIATV_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.8028259277344	2	511.803291	1021.59203	-0.47306	-0.00024211	0.5961	0.00030509	0.12304	6.2974E-05	511.80336503689006	45.6	1.3677	45.6	45.079	46.447	0					96	39	4	0	0	0	0.013333	2	4457	4457;4468		176.41	59.507	1	3970600			26777	3423	18471	18509	30821;30822	30821					0.08209735714240196
ILQQHIATV	9	Unmodified	_ILQQHIATV_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.8031311035156	2	511.803291	1021.59203	-0.64638	-0.00033082	0.73892	0.00037818	0.092536	4.736E-05	511.80348854068785	45.735	1.236	45.583	45.041	46.277	-0.15156					93	35	4	0	0	0	0.012965	3	4439	4439;4449;4459		172.03	57.973	1	4137000			26778	3423	18471	18509	30823;30824;30825	30823					0.08209735714240196
ILQQHIATV	9	Unmodified	_ILQQHIATV_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.8038024902344	2	511.803291	1021.59203	-0.46059	-0.00023573	0.64071	0.00032792	0.18012	9.2186E-05	511.80340818911185	45.6	1.3957	45.644	45.038	46.433	0.04388					108	40	4	0	0	0	0.013094	3	4394	4364;4376;4394		171.38	57.973	1	3859900			26779	3423	18471	18509	30826;30827;30828	30828					0.08209735714240196
ILQQHIATV	9	Unmodified	_ILQQHIATV_					0	0	0		nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.803291	1021.59203	-0.14688	-7.5172E-05	-5.9218	-0.0030308	-6.0687	-0.003106	511.79919896074756	45.503	0.13514	45.251	45.157	45.292	-0.25252	-0.28373	-0.0065944	NaN	172.03	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303460			26780	3423	18471	18509							0.08209735714240196
ILQQIILECF	10	Unmodified	_ILQQIILECF_					0	0	0		chr7:99349025-99353909|197|12.26|0.74|4.05|+|2|None,ARPC1A|1	chr7:99349025-99353909|197|12.26|0.74|4.05|+|2|None,ARPC1A|1	chr7:99349025-99353909|197|12.26|0.74|4.05|+|2|None,ARPC1A|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	407.23199462890625	3	407.23002	1218.66823	-0.19815	-8.0694E-05	3.1885	0.0012984	2.9903	0.0012178	407.2313325614673	43.601	0.89928	43.456	43.094	43.994	-0.14471					80	24	5	0	0	0	1.0122	1	4061	4061		44.377	1.5129	1	6556600			26781	429	18472	18510	30829	30829					0.06764371499343724
ILQQKKEK	8	Unmodified	_ILQQKKEK_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.81884765625	2	507.818941	1013.62333	-0.58705	-0.00029812	0.15165	7.7011E-05	-0.4354	-0.0002211	507.81887393542377	22.994	0.50672	22.809	22.6	23.107	-0.18539					25	10	4	0	0	0	0.6536	1	863	863		71.296	0	1	328310			26782	3420	18473	18511	30830	30830					0.1170630874833023
ILQRGLNLL	9	Unmodified	_ILQRGLNLL_					0	0	0			REV__ENSG00000125863|ENST00000347364|MKKS	REV__ENSG00000125863|ENST00000347364|MKKS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8248291015625	2	520.334759	1038.65496	-0.87292	-0.00045421	4.2622	0.0022178	3.3893	0.0017636	520.3369557596682	81.491	0.28915	81.491	81.299	81.589	0					10	6	2	0	0	0	0.024412	1	10136	10136		50.025	5.4935	1	88586	+		26783	22854	18474	18512	30831	30831					0.13718301502285613
ILQRKEMP	8	Unmodified	_ILQRKEMP_					0	0	0			REV__ENSG00000197818|ENST00000361573|SLC9A8	REV__ENSG00000197818|ENST00000361573|SLC9A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7925720214844	2	507.791869	1013.56919	-1.0818	-0.00054933	0.064944	3.2978E-05	-1.0169	-0.00051636	507.791952576348	44.856	0.69245	44.707	44.422	45.115	-0.1488					30	19	2	0	0	0	0.027866	1	4275	4275		60.294	16.177	1	963000	+		26784	28350	18475	18513	30832	30832					0.06294393325106284
ILQRKEMP	8	Unmodified	_ILQRKEMP_					0	0	0			REV__ENSG00000197818|ENST00000361573|SLC9A8	REV__ENSG00000197818|ENST00000361573|SLC9A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.791869	1013.56919	-0.24241	-0.0001231	-6.7622	-0.0034338	-7.0046	-0.0035569	507.78823627673364	45.011	0.32017	45.055	44.894	45.214	0.043877	0.24552	-0.0066649	NaN	60.294	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163670	+		26785	28350	18475	18513							0.06294393325106284
ILQSCNEHLA	10	Unmodified	_ILQSCNEHLA_					0	0	0			REV__ENSG00000101997|ENST00000376227|CCDC22	REV__ENSG00000101997|ENST00000376227|CCDC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2774047851562	2	564.279323	1126.54409	-1.1572	-0.00065297	-2.0356	-0.0011486	-3.1928	-0.0018016	564.2779913033235	90.761	0.95625	90.605	90.348	91.304	-0.1552					57	22	4	0	0	0	0.45418	1	11105	11105		93.143	13.692	1	1981100	+		26786	21274	18476	18514	30833	30833					-0.01411706268117996
ILQSKWFF	8	Unmodified	_ILQSKWFF_					0	0	0			REV__nc|ENSG00000196458|Q86T29-2|ZNF605	REV__nc|ENSG00000196458|Q86T29-2|ZNF605	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.771728515625	2	534.797478	1067.5804	-0.48935	-0.0002617	-3.5645	-0.0019063	-4.0539	-0.002168	535.2975048248876	54.744	1.1592	54.514	53.905	55.065	-0.23087					46	33	2	0	0	0	0.027866	1	5887	5887		40.573	8.9937	1	216470	+		26787	37054	18477	18515	30834	30834					0.049315386908801884
ILQVALAR	8	Unmodified	_ILQVALAR_					0	0	0		SCN10A|p.N909I|1|0.5|ENSG00000185313|chr3:38726967-38726967|T/A|missense_variant	SCN10A|p.N909I|1|0.5|ENSG00000185313|chr3:38726967-38726967|T/A|missense_variant	SCN10A|p.N909I|1|0.5|ENSG00000185313|chr3:38726967-38726967|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2313537597656	2	442.28982	882.565087	0.195	8.6248E-05	-0.87152	-0.00038546	-0.67651	-0.00029922	442.2893239330544	47.25	0.70428	47.056	46.746	47.45	-0.19387					28	18	2	0	0	0	0.027866	1	4582	4582		11.511	4.3177	1	230450			26788	37858	18478	18516	30835	30835					0.11910671893701874
ILQVALAR	8	Unmodified	_ILQVALAR_					0	0	0		SCN10A|p.N909I|1|0.5|ENSG00000185313|chr3:38726967-38726967|T/A|missense_variant	SCN10A|p.N909I|1|0.5|ENSG00000185313|chr3:38726967-38726967|T/A|missense_variant	SCN10A|p.N909I|1|0.5|ENSG00000185313|chr3:38726967-38726967|T/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.28982	882.565087	0.23258	0.00010287	-1.9868	-0.00087873	-1.7542	-0.00077586	442.28826348469005	46.791	0.11886	46.791	46.733	46.852	0	-0.13239	-0.0007917	NaN	11.511	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22722			26789	37858	18478	18516							0.11910671893701874
ILQVRRAIEEL	11	Unmodified	_ILQVRRAIEEL_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.60797119140625	3	447.273388	1338.79833	0.087689	3.9221E-05	-1.006	-0.00044998	-0.91836	-0.00041076	447.2728452141442	106.24	0.62864	106.24	105.98	106.61	0.00014496					70	21	4	0	0	0	1.0532	1	13556	13556		24.232	2.4514	1	1378200	+		26790	25515	18479	18517	30836	30836					0.14248683822711428
ILQVSIPSL	9	Unmodified	_ILQVSIPSL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.3030090332031	2	485.302593	968.590633	-0.54167	-0.00026287	0.39026	0.00018939	-0.15141	-7.3479E-05	485.30248885344963	86.508	1.4475	86.532	86.072	87.52	0.023666					62	33	3	0	0	0	0.16638	1	10796	10796		95.815	13.575	1	427010			26791	3066	18480	18518	30837	30837					0.10508101625475774
ILQVSIPSL	9	Unmodified	_ILQVSIPSL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.302593	968.590633	0.30427	0.00014766	-0.4844	-0.00023508	-0.18013	-8.7418E-05	485.302126742644	86.561	0.98145	86.561	86.171	87.152	0	0.099935	-0.00031115	NaN	95.815	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373760			26792	3066	18480	18518							0.10508101625475774
ILQVSIPSL	9	Unmodified	_ILQVSIPSL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.302593	968.590633	-0.029276	-1.4208E-05	0.018442	8.9501E-06	-0.010833	-5.2574E-06	485.3023742560479	86.537	0.97951	86.492	86.163	87.142	-0.045097	0.03091	0.00017691	NaN	95.815	57	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431770			26793	3066	18480	18518							0.10508101625475774
ILQVSIPSL	9	Unmodified	_ILQVSIPSL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.302593	968.590633	0.12	5.8237E-05	-0.58068	-0.00028181	-0.46068	-0.00022357	485.30194154954035	86.584	1.2955	86.397	85.518	86.814	-0.18695	-0.063611	-0.0004046	NaN	95.815	40	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63331			26794	3066	18480	18518							0.10508101625475774
ILQVSIPSL	9	Unmodified	_ILQVSIPSL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.302593	968.590633	0.616	0.00029895	-1.1837	-0.00057444	-0.56768	-0.00027549	485.3016850832789	86.465	0.78056	86.322	86.016	86.796	-0.14217	-0.13831	-0.00098988	NaN	95.815	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61506			26795	3066	18480	18518							0.10508101625475774
ILQYSQKEDKY	11	Unmodified	_ILQYSQKEDKY_					0	0	0		ENST00000469717.5_1_1:154130117-154143232:-|nuORF	ENST00000469717.5_1_1:154130117-154143232:-|nuORF	ENST00000469717.5_1_1:154130117-154143232:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2674865722656	3	472.245275	1413.714	3.0953	0.0014617	3.5706	0.0016862	6.6658	0.0031479	472.2469762317633	18.301	0.20065	18.058	17.974	18.175	-0.24256					5	3	2	0	0	0	0.02484	1	264	264		17.167	0	1	26863			26796	14914	18481	18519	30838	30838					0.023686882153015176
ILQYTSATR	9	Unmodified	_ILQYTSATR_					0	0	0		ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2564697265625	2	526.790381	1051.56621	-0.49373	-0.00026009	-0.94605	-0.00049837	-1.4398	-0.00075846	526.7898975819656	39.759	0.3544	39.536	39.382	39.736	-0.22311					10	8	2	0	0	0	0.024541	1	3391	3391		14.137	2.6261	1	153670			26797	13337	18482	18520	30839	30839					0.04248841471940068
ILRAILEVL	9	Unmodified	_ILRAILEVL_					0	0	0		ENSG00000149476|ENST00000394900|TKFC;ENST00000529479.5_1_11:61113786-61113972:+|nuORF;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7643432617188	2	520.347335	1038.68012	-0.96066	-0.00049988	1.2289	0.00063948	0.26829	0.0001396	520.3478821498518	83.541	1.5667	83.541	83.351	84.917	0					62	36	2	0	0	0	0.024506	1	10506	10506		30.504	5.0535	1	221280			26798	6091;16092	18483	18521	30840	30840					0.1623235630486306
ILRAILEVL	9	Unmodified	_ILRAILEVL_					0	0	0		ENSG00000149476|ENST00000394900|TKFC;ENST00000529479.5_1_11:61113786-61113972:+|nuORF;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.347335	1038.68012	0.41935	0.00021821	-0.54393	-0.00028303	-0.12459	-6.4828E-05	520.3469655801209	83.584	0.64117	83.372	82.876	83.517	-0.21159	-0.039477	-0.0011781	NaN	30.504	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132370			26799	6091;16092	18483	18521							0.1623235630486306
ILRAILEVL	9	Unmodified	_ILRAILEVL_					0	0	0		ENSG00000149476|ENST00000394900|TKFC;ENST00000529479.5_1_11:61113786-61113972:+|nuORF;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.347335	1038.68012	0.7307	0.00038022	-0.82269	-0.00042808	-0.091987	-4.7865E-05	520.3468244849818	83.466	1.2777	83.296	82.948	84.225	-0.16915	-0.11535	-0.0014682	NaN	30.504	35	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129980			26800	6091;16092	18483	18521							0.1623235630486306
ILRAILEVL	9	Unmodified	_ILRAILEVL_					0	0	0		ENSG00000149476|ENST00000394900|TKFC;ENST00000529479.5_1_11:61113786-61113972:+|nuORF;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.347335	1038.68012	0.23269	0.00012108	-0.19778	-0.00010291	0.03491	1.8165E-05	520.347038706606	83.469	1.0224	83.331	82.91	83.932	-0.1386	-0.081153	-0.00081784	NaN	30.504	37	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126620			26801	6091;16092	18483	18521							0.1623235630486306
ILRAIQQSP	9	Unmodified	_ILRAIQQSP_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3064575195312	2	513.308741	1024.60293	-0.83206	-0.0004271	1.1571	0.00059393	0.32501	0.00016683	513.3091733522691	53.233	0.53963	53.328	53.017	53.556	0.095669					42	14	4	0	0	0	0.024457	1	5701	5701		21.96	0	1	2224800	+		26802	28047	18484	18522	30841	30841					0.09161138088529697
ILREMLEY	8	Unmodified	_ILREMLEY_					0	0	0		nc|ENSG00000146410|Q6P444-2|MTFR2;ENST00000527338.1_1_6:136570093-136570225:-|nuORF;ENSG00000146410|ENST00000420702|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2987060546875	2	533.78371	1065.55287	-1.3374	-0.00071389	3.3976	0.0018136	2.0602	0.0010997	533.7857689260114	61.134	0.47536	60.958	60.521	60.997	-0.1761					13	11	2	0	0	0	0.027866	1	6836	6836		30.504	20.238	1	77639			26803	5879	18485	18523	30842	30842					0.022712673683372486
ILREMLEY	8	Unmodified	_ILREMLEY_					0	0	0		nc|ENSG00000146410|Q6P444-2|MTFR2;ENST00000527338.1_1_6:136570093-136570225:-|nuORF;ENSG00000146410|ENST00000420702|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.78371	1065.55287	-1.3458	-0.00071835	8.6263	0.0046046	7.2806	0.0038862	533.7883376046019	60.615	0.59068	60.615	60.33	60.921	0	-0.12134	-0.00011084	NaN	38.806	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312670			26804	5879	18485	18523							0.022712673683372486
ILREMLEY	8	Unmodified	_ILREMLEY_					0	0	0		nc|ENSG00000146410|Q6P444-2|MTFR2;ENST00000527338.1_1_6:136570093-136570225:-|nuORF;ENSG00000146410|ENST00000420702|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.78371	1065.55287	-1.0174	-0.00054305	8.3179	0.00444	7.3006	0.0038969	533.7880453643738	60.906	0.5663	60.693	60.384	60.95	-0.2134	-0.043322	-0.0004401	NaN	38.806	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308390			26805	5879	18485	18523							0.022712673683372486
ILREMLEY	8	Unmodified	_ILREMLEY_					0	0	0		nc|ENSG00000146410|Q6P444-2|MTFR2;ENST00000527338.1_1_6:136570093-136570225:-|nuORF;ENSG00000146410|ENST00000420702|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	nc|ENSG00000146410|Q6P444-2|MTFR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.78371	1065.55287	-1.9849	-0.0010595	9.2602	0.004943	7.2753	0.0038834	533.7885417459951	60.6	0.59877	60.679	60.28	60.879	0.078888	-0.057292	0.00056586	NaN	38.806	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325000			26806	5879	18485	18523							0.022712673683372486
ILRFPALC	8	Unmodified	_ILRFPALC_					0	0	0			REV__nc|ENSG00000170703|Q8N841-4|TTLL6	REV__nc|ENSG00000170703|Q8N841-4|TTLL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.77484130859375	2	466.772948	931.531344	0.77677	0.00036257	2.6282	0.0012268	3.405	0.0015894	466.7740128115294	19.341	0.48107	19.341	19.119	19.6	0					25	9	4	0	0	0	1.0574	1	409	409		26.796	0	1	316980	+		26807	36924	18486	18524	30843	30843					0.06283927130277789
ILRFPVPEL	9	Unmodified	_ILRFPVPEL_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.7840576171875	2	542.331685	1082.64882	-0.81978	-0.00044459	-3.5334	-0.0019163	-4.3532	-0.0023609	542.3298765322886	67.031	0.81931	67.054	66.855	67.674	0.023903					33	19	3	0	0	0	0.024	1	7951	7951		65.803	16.362	1	753400			26808	6294	18487	18525	30844	30844					0.11079783270747612
ILRGFPGLE	9	Unmodified	_ILRGFPGLE_					0	0	0		ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2888488769531	2	501.292559	1000.57057	-0.55827	-0.00027985	-3.5602	-0.0017847	-4.1184	-0.0020645	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.70186	1	10350	10350		45.952	0	1	2156900			26809	8671	18488	18526	30845	30845					0.07030350685511166
ILRGISTVY	9	Unmodified	_ILRGISTVY_					0	0	0			REV__nc|ENSG00000114859|P51788-4|CLCN2	REV__nc|ENSG00000114859|P51788-4|CLCN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8440246582031	2	511.305667	1020.59678	-0.49068	-0.00025089	0.67929	0.00034733	0.18861	9.6437E-05	511.30618467828407	76.355	0.62468	76.126	75.777	76.402	-0.22843					22	15	2	0	0	0	0.024436	1	9339	9339		47.916	9.1095	1	155900	+		26810	22151	18489	18527	30846	30846					0.08730619856999056
ILRHRQTI	8	Unmodified	_ILRHRQTI_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.8203735351562	2	518.82235	1035.63015	0.46863	0.00024313	2.5111	0.0013028	2.9798	0.001546	518.8235656576215	80.571	0.73708	80.364	80.132	80.869	-0.20633					32	17	2	0	0	0	0.027866	1	9657	9657		19.36	0	1	982420			26811	9823	18490	18528	30847	30847					0.11375666419553454
ILRIRGYVF	9	Unmodified	_ILRIRGYVF_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.8533935546875	2	568.850576	1135.6866	0.4982	0.0002834	4.3416	0.0024697	4.8398	0.0027531	568.8529419921376	101.21	1.9311	101.08	100.74	102.68	-0.12576					119	46	5	0	0	0	0.88411	1	12553	12553		33.516	0.70317	1	6969500			26812	9910	18491	18529	30848	30848					0.12418294256212903
ILRKIPVE	8	Unmodified	_ILRKIPVE_					0	0	0		nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.30010986328125	2	484.318577	966.622602	-0.14264	-6.9084E-05	2.3003	0.0011141	2.1576	0.001045	484.3206774460893	60.287	0.34905	60.033	59.904	60.253	-0.25373					11	8	2	0	0	0	0.027866	1	6721	6721		23.042	4.7181	1	153810			26813	1415	18492	18530	30849	30849					0.13795514099274442
ILRKNPKGF	9	Unmodified	_ILRKNPKGF_					0	0	0		ENSG00000162551|ENST00000374840|ALPL;nc|ENSG00000162551|P05186-2|ALPL;nc|ENSG00000162551|P05186-3|ALPL	ENSG00000162551|ENST00000374840|ALPL	ENSG00000162551|ENST00000374840|ALPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2944946289062	2	536.834926	1071.6553	-0.55206	-0.00029637	3.481	0.0018687	2.929	0.0015724	536.8366088881936	56.608	0.55241	56.383	56.069	56.621	-0.2248					30	13	3	0	0	0	0.024506	1	6126	6126		30.504	8.5438	1	397970			26814	6952	18493	18531	30850	30850					0.12233721222128224
ILRLFLLM	8	Unmodified	_ILRLFLLM_					0	0	0			REV__ENST00000521734.1_1_8:82391102-82391918:-|nuORF	REV__ENST00000521734.1_1_8:82391102-82391918:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.32342529296875	2	509.827724	1017.64089	-0.25288	-0.00012893	3.3456	0.0017057	3.0927	0.0015767	509.82948259803413	78.685	1.2438	78.703	78.482	79.726	0.017967					38	29	2	0	0	0	0.027866	1	9642	9642		57.453	23.937	1	182170	+		26815	34325	18494	18532	30851	30851					0.13277932749622323
ILRLQPPQGE	10	Unmodified	_ILRLQPPQGE_					0	0	0		ENST00000463195.5_1_7:99702669-99703627:+|nuORF;ENSG00000221838|ENST00000359593|AP4M1	ENST00000463195.5_1_7:99702669-99703627:+|nuORF	ENST00000463195.5_1_7:99702669-99703627:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.7990112304688	2	575.83258	1149.65061	-0.6204	-0.00035725	4.3528	0.0025065	3.7324	0.0021492	576.3385779747514	60.194	0.1967	60.018	59.96	60.156	-0.1761					5	4	2	0	0	0	0.03519	1	6709	6709		39.253	8.9351	1	40867			26816	10613	18495	18533	30852	30852					0.08176792288713841
ILRLTSGY	8	Unmodified	_ILRLTSGY_					0	0	0		ENST00000300584.7_1_15:78290174-78290387:-|nuORF	ENST00000300584.7_1_15:78290174-78290387:-|nuORF	ENST00000300584.7_1_15:78290174-78290387:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7723083496094	2	461.77146	921.528367	1.1331	0.00052325	1.1899	0.00054948	2.3231	0.0010727	461.77169065097365	98.477	0.98392	98.475	98.139	99.123	-0.0020752					47	22	3	0	0	0	0.71833	1	12522	12522		65.803	2.4969	1	682700			26817	11905	18496	18534	30853	30853					0.064463752771303
ILRMCSLFL	9	Unmodified	_ILRMCSLFL_					0	0	0		ENST00000351004.7_1_7:79846663-79846762:+|nuORF	ENST00000351004.7_1_7:79846663-79846762:+|nuORF	ENST00000351004.7_1_7:79846663-79846762:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3081665039062	2	548.306298	1094.59804	-0.63397	-0.00034761	3.1538	0.0017293	2.5198	0.0013816	548.30787158307	101.57	1.6212	101.58	101.09	102.71	0.0090332					100	37	4	0	0	0	0.072054	2	12960	12960;12972		120.62	8.7669	1	2768400			26818	12596	18497	18535	30854;30855	30854					0.05452794629877644
ILRMCSLFL	9	Unmodified	_ILRMCSLFL_					0	0	0		ENST00000351004.7_1_7:79846663-79846762:+|nuORF	ENST00000351004.7_1_7:79846663-79846762:+|nuORF	ENST00000351004.7_1_7:79846663-79846762:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3081665039062	2	548.306298	1094.59804	-0.34826	-0.00019095	2.9216	0.0016019	2.5733	0.001411	548.30777302576	101.66	1.8008	101.65	101.06	102.86	-0.0054474					102	41	4	0	0	0	0.08613	2	12952	12940;12952		115.46	8.7669	1	3111100			26819	12596	18497	18535	30856;30857	30857					0.05452794629877644
ILRPMLLL	8	Unmodified	_ILRPMLLL_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7984619140625	2	484.819899	967.625244	1.7145	0.00083122	-2.6509	-0.0012852	-0.93643	-0.000454	484.81794719004705	59.129	0.21333	58.942	58.793	59.007	-0.18705					13	5	3	0	0	0	0.027866	1	6682	6682		37.028	0	1	289770	+		26820	28638	18498	18536	30858	30858					0.1401364623259269
ILRPNERQLI	10	Unmodified	_ILRPNERQLI_					0	0	0			REV__ENST00000382079.3_1_5:33989591-34020782:-|nuORF	REV__ENST00000382079.3_1_5:33989591-34020782:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.922119140625	3	417.922578	1250.7459	0.42376	0.0001771	-1.1569	-0.00048348	-0.7331	-0.00030638	417.92203568971775	104.35	0.97945	104.35	103.94	104.92	0					69	25	4	0	0	0	1.1277	1	13387	13387		25.126	1.7481	1	2568700	+		26821	28973	18499	18537	30859	30859					0.13056145479754377
ILRRARPPAS	10	Unmodified	_ILRRARPPAS_					0	0	0		ENST00000317147.9_1_16:58633233-58633290:-|nuORF	ENST00000317147.9_1_16:58633233-58633290:-|nuORF	ENST00000317147.9_1_16:58633233-58633290:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.8530883789062	2	568.854181	1135.69381	0.4982	0.0002834	-1.9963	-0.0011356	-1.4981	-0.00085218	568.8529419921376	101.21	1.9311	101.08	100.74	102.68	-0.12576					119	46	5	0	0	0	1.0781	1	12564	12564		35.618	2.8059	1	6969500			26822	12159	18500	18538	30860	30860					0.1313902685665198
ILRRLASYW	9	Unmodified	_ILRRLASYW_					0	0	0		ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	ENSG00000006530|ENST00000649286|AGK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	590.2640991210938	2	589.345658	1176.67676	-0.3257	-0.00019195	-0.55813	-0.00032893	-0.88383	-0.00052088	589.3452627436695	53.174	0.2373	52.915	52.763	53	-0.25838					8	5	2	0	0	0	0.024354	1	5544	5544		57.811	26.281	1	71569			26823	794	18501	18539	30861	30861					0.09549106250847217
ILRRRWTFRKW	11	Unmodified	_ILRRRWTFRKW_					0	0	0		ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2243957519531	4	405.245481	1616.95282	1.4565	0.00059025	3.0137	0.0012213	4.4703	0.0018115	405.24673130115855	23.319	0.39699	23.128	22.851	23.248	-0.19117					12	8	2	0	0	0	0.024904	1	847	847		0.37141	0.03091	1	73339			26824	12099	18502	18540	30862	30862					0.16901977818565683
ILRRRWTFRKW	11	Unmodified	_ILRRRWTFRKW_					0	0	0		ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		4	405.245481	1616.95282	0.73206	0.00029666	3.2644	0.0013229	3.9964	0.0016195	405.2467933161789	23.27	0.4993	23.068	22.78	23.279	-0.20193	-0.029707	9.9257E-05	NaN	0.37141	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109690			26825	12099	18502	18540							0.16901977818565683
ILRRSALLP	9	Unmodified	_ILRRSALLP_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7664794921875	2	519.842751	1037.67095	-0.0049413	-2.5687E-06	-0.32356	-0.0001682	-0.3285	-0.00017077	519.8425682130238	47.541	1.3484	47.388	47.015	48.363	-0.153					84	39	4	0	0	0	0.024381	1	4777	4777		45.952	0	1	7119300	+		26826	37004	18503	18541	30863	30863					0.15362007739167893
ILRRTESL	8	Unmodified	_ILRRTESL_					0	0	0		nc|ENSG00000162891|Q9NYY1-2|IL20;ENSG00000162891|ENST00000367098|IL20	nc|ENSG00000162891|Q9NYY1-2|IL20	nc|ENSG00000162891|Q9NYY1-2|IL20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.3009033203125	2	494.300916	986.587279	0.83498	0.00041273	-1.1174	-0.00055231	-0.28239	-0.00013958	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	1.0572	1	11961	11961		28.254	1.4582	1	37582000			26827	7008	18504	18542	30864	30864					0.09344851571461277
ILRRTESL	8	Unmodified	_ILRRTESL_					0	0	0		nc|ENSG00000162891|Q9NYY1-2|IL20;ENSG00000162891|ENST00000367098|IL20	nc|ENSG00000162891|Q9NYY1-2|IL20	nc|ENSG00000162891|Q9NYY1-2|IL20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.30108642578125	2	494.300916	986.587279	-0.25602	-0.00012655	-0.19108	-9.4451E-05	-0.44709	-0.000221	494.30075389334326	96.309	2.5046	96.153	95.62	98.125	-0.15646					207	58	7	0	0	0	1.043	1	11998	11998		30.504	1.3541	1	35328000			26828	7008	18504	18542	30865	30865					0.09344851571461277
ILRTRASN	8	Unmodified	_ILRTRASN_					0	0	0		ENST00000219789.10_1_16:29870206-29870488:-|nuORF	ENST00000219789.10_1_16:29870206-29870488:-|nuORF	ENST00000219789.10_1_16:29870206-29870488:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7775573730469	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.0106	1	9881	9881		35.618	0	1	1283800			26829	11174	18505	18543	30866	30866					0.07307411740168845
ILRTTGYTN	9	Unmodified	_ILRTTGYTN_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8211059570312	2	519.782556	1037.55056	0.068021	3.5356E-05	-1.6542	-0.00085981	-1.5861	-0.00082445	519.7799209181022	80.638	0.24805	80.492	80.284	80.532	-0.146					13	5	3	0	0	0	0.024397	1	9636	9636		24.519	0	1	247610			26830	1097	18506	18544	30867	30867					0.0332855495489639
ILRVPYPC	8	Unmodified	_ILRVPYPC_					0	0	0		ENST00000421779.2_1_2:220033802-220034706:-|nuORF	ENST00000421779.2_1_2:220033802-220034706:-|nuORF	ENST00000421779.2_1_2:220033802-220034706:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7500915527344	2	480.770406	959.526258	-0.837	-0.0004024	-4.0756	-0.0019594	-4.9126	-0.0023618	480.76777161659413	30.354	0.20718	30.429	30.337	30.544	0.074314					6	4	2	0	0	0	0.027866	1	1900	1900		46.766	9.6073	1	54771			26831	13999	18507	18545	30868	30868					0.044876232676756445
ILRVTKHEKN	10	Unmodified	_ILRVTKHEKN_					0	0	0			REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.3690185546875	2	619.372404	1236.73025	0.10969	6.7938E-05	-2.6718	-0.0016548	-2.5621	-0.0015869	619.3707577954212	100.03	0.81097	100.04	99.701	100.51	0.010109					50	20	3	0	0	0	1.1286	1	12809	12809		25.574	1.0549	1	871680	+		26832	30871	18508	18546	30869	30869					0.12135858962687962
ILRWPPSA	8	Unmodified	_ILRWPPSA_					0	0	0			REV__nc|ENSG00000172243|Q9BXN2-9|CLEC7A	REV__nc|ENSG00000172243|Q9BXN2-9|CLEC7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2723083496094	2	470.27417	938.533787	-1.142	-0.00053707	-3.0801	-0.0014485	-4.2222	-0.0019856	470.27264567680317	91.314	1.5131	91.165	90.609	92.122	-0.1487					100	35	5	0	0	0	1.0009	1	11216	11216		37.159	1.5408	1	5837400	+		26833	26650	18509	18547	30870	30870					0.06206098859604481
ILSAAEHFSM	10	Unmodified	_ILSAAEHFSM_					0	0	0		ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8298950195312	2	553.270967	1104.52738	-0.484	-0.00026779	-0.18969	-0.00010495	-0.67369	-0.00037273	553.2709678760292	49.43	0.6993	49.277	48.97	49.67	-0.1525					29	18	2	0	0	0	0.03519	1	5073	5073		35.618	0	1	866420			26834	8655	18510	18548	30871	30871					-0.02070207154088166
ILSAMELIWN	10	Unmodified	_ILSAMELIWN_					0	0	0		ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85	ENST00000583548.1_1_17:73204633-73212422:+|nuORF	ENST00000583548.1_1_17:73204633-73212422:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	594.7686767578125	2	595.317917	1188.62128	-1.4007	-0.00083386	-2.9115	-0.0017333	-4.3122	-0.0025671	595.3160411974636	48.966	0.58363	49.041	48.807	49.391	0.074196					17	15	2	0	0	0	0.03519	1	4982	4982		56.721	5.3856	1	139180			26835	4106	18511	18549	30872	30872					0.03451511948219377
ILSCVAVCEV	10	Carbamidomethyl (C)	_ILSC(Carbamidomethyl (C))VAVCEV_	ILSC(1)VAVCEV		ILSC(46)VAVC(-46)EV		0	1	0		nc|ENSG00000138617|Q8N5Y8-2|PARP16;ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.7775268554688	2	546.775028	1091.5355	-1.0161	-0.00055558	1.3819	0.00075559	0.36581	0.00020002	546.7756597588767	76.91	0.84987	76.681	76.003	76.853	-0.22843					25	20	2	0	0	0	0.67706	1	9451	9451		68.787	6.6794	2	631750			26836	5255	18512	18550	30873	30873	70				-0.006603962289773335
ILSELAPSL	9	Unmodified	_ILSELAPSL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7786560058594	2	471.778951	941.543348	0.28434	0.00013414	0.019326	9.1176E-06	0.30366	0.00014326	471.77874828196275	78.804	1.042	78.804	78.531	79.573	0					39	24	2	0	0	0	0.096521	2	9761	9761;9773		111.65	26.289	1	1395800			26837	14730	18513	18551	30874;30875	30874					0.07023822354460663
ILSELAPSL	9	Unmodified	_ILSELAPSL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.77862548828125	2	471.778951	941.543348	0.20891	9.8557E-05	0.070146	3.3093E-05	0.27905	0.00013165	471.7787749964439	78.989	0.99969	78.806	78.515	79.515	-0.18304					36	23	2	0	0	0	0.06122	2	9756	9745;9756		124.59	39.235	1	1256700			26838	14730	18513	18551	30876;30877	30877					0.07023822354460663
ILSELAPSL	9	Unmodified	_ILSELAPSL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.77886962890625	2	471.778951	941.543348	0.38025	0.0001794	-0.026297	-1.2406E-05	0.35396	0.00016699	471.77865100739274	78.83	1.1183	78.849	78.567	79.685	0.018669					43	26	3	0	0	0	0.028071	2	9689	9680;9689		143.11	23.55	1	1439400			26839	14730	18513	18551	30878;30879	30879					0.07023822354460663
ILSELAPSL	9	Unmodified	_ILSELAPSL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.7816162109375	2	471.778951	941.543348	0.63586	0.00029998	-0.43088	-0.00020328	0.20498	9.6705E-05	471.77841397786653	77.014	0.48797	76.762	76.484	76.972	-0.25162					18	11	2	0	0	0	0.25032	1	9171	9171		82.305	2.3658	1	636330			26840	14730	18513	18551	30880	30880					0.07023822354460663
ILSELAPSL	9	Unmodified	_ILSELAPSL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.778951	941.543348	0.63083	0.00029761	-0.22489	-0.0001061	0.40594	0.00019151	471.77854784411926	77.045	0.52995	76.777	76.467	76.997	-0.26806	0.02532	-0.00036074	NaN	82.305	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	546910			26841	14730	18513	18551							0.07023822354460663
ILSELAPSL	9	Unmodified	_ILSELAPSL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.778951	941.543348	-0.54948	-0.00025923	1.0326	0.00048717	0.48314	0.00022794	471.779100158695	76.884	0.50085	76.715	76.439	76.939	-0.16854	-0.036412	0.0008258	NaN	82.305	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621050			26842	14730	18513	18551							0.07023822354460663
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7795715332031	2	493.779482	985.544411	-0.39307	-0.00019409	0.69926	0.00034528	0.30619	0.00015119	493.77966513615553	58.55	1.8771	58.362	58.007	59.884	-0.18795					105	46	5	0	0	0	0.013094	4	6415	6415;6425;6438;6450		211.39	72.563	1	6323400			26843	5688	18514	18552	30881;30882;30883;30884	30881					0.05106036723384477
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7789611816406	2	493.779482	985.544411	0.15786	7.7946E-05	0.37521	0.00018527	0.53306	0.00026322	493.77949657168057	58.545	1.0432	58.364	58.029	59.072	-0.18134					80	25	4	0	0	0	0.013887	3	6433	6433;6445;6458		211.39	68.282	1	6179700			26844	5688	18514	18552	30885;30886;30887	30885					0.05106036723384477
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7795715332031	2	493.779482	985.544411	0.67632	0.00033395	-0.38434	-0.00018978	0.29198	0.00014417	493.7791702454647	58.603	1.048	58.361	58.129	59.177	-0.24165					61	25	3	0	0	0	0.013094	4	6422	6422;6432;6444;6457		195.81	66.131	1	6637200			26845	5688	18514	18552	30888;30889;30890;30891	30888					0.05106036723384477
ILSFGVFIN	9	Unmodified	_ILSFGVFIN_					0	0	0		ENSG00000184210|ENST00000333026|DGAT2L6	ENSG00000184210|ENST00000333026|DGAT2L6	ENSG00000184210|ENST00000333026|DGAT2L6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3240051269531	2	505.289485	1008.56442	0.33985	0.00017172	-1.8402	-0.00092982	-1.5003	-0.0007581	505.28796707759756	66.046	0.72517	66.046	65.605	66.33	0					35	19	3	0	0	0	0.024506	1	7815	7815		23.042	3.6825	1	1562000			26846	9316	18515	18553	30892	30892					0.06047832454009949
ILSFIRRVC	9	Unmodified	_ILSFIRRVC_					0	0	0			REV__ENSG00000119899|ENST00000355773|SLC17A5	REV__ENSG00000119899|ENST00000355773|SLC17A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.2967529296875	2	553.828786	1105.64302	0.04182	2.3161E-05	2.0665	0.0011445	2.1084	0.0011677	553.8296782014007	101.58	0.90076	101.41	101.15	102.05	-0.17178					49	20	4	0	0	0	0.024457	1	12643	12643		37.159	12.64	1	519240	+		26847	22495	18516	18554	30893	30893					0.09442361487435846
ILSFWSEV	8	Unmodified	_ILSFWSEV_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2575988769531	2	490.758018	979.501483	0.57953	0.00028441	2.6056	0.0012787	3.1851	0.0015631	490.7591815831314	105.54	0.66424	105.54	105.36	106.03	0					30	20	2	0	0	0	0.027866	1	13565	13565		33.516	3.674	1	95689	+		26848	24429	18517	18555	30894	30894					0.010912666659578463
ILSGEMAIEL	10	Oxidation (M)	_ILSGEM(Oxidation (M))AIEL_		ILSGEM(1)AIEL		ILSGEM(77)AIEL	0	0	1		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2863159179688	2	546.286282	1090.55801	0.55925	0.00030551	-1.2015	-0.00065639	-0.64229	-0.00035087	546.2852716148136	85.723	2.5407	85.573	84.497	87.038	-0.14967					129	59	3	0	0	0	0.60198	1	10429	10429		76.774	9.2805	1	626790			26849	19003;8399	18518	18556	30895	30895		347			0.01635526440304602
ILSGLFTT	8	Unmodified	_ILSGLFTT_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2461853027344	2	426.247286	850.48002	0.090279	3.8481E-05	-2.9325	-0.00125	-2.8422	-0.0012115	426.2459398709793	86.867	2.4687	86.822	85.947	88.415	-0.045105					139	58	5	0	0	0	1.0133	1	10894	10894		35.201	6.9464	1	11102000	+		26850	28165	18519	18557	30896	30896					0.04879881637236849
ILSGLFTT	8	Unmodified	_ILSGLFTT_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2460021972656	2	426.247286	850.48002	0.26941	0.00011483	-3.1272	-0.001333	-2.8578	-0.0012181	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	0.97924	1	10528	10528		40.573	3.5441	1	14269000	+		26851	28165	18519	18557	30897	30897					0.04879881637236849
ILSGLFTT	8	Unmodified	_ILSGLFTT_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2462158203125	2	426.247286	850.48002	0.40347	0.00017198	-3.3338	-0.001421	-2.9303	-0.001249	426.24579574865595	86.946	2.1354	86.809	86.18	88.315	-0.13734					133	50	5	0	0	0	1.0133	1	10554	10554		35.201	6.9464	1	11262000	+		26852	28165	18519	18557	30898	30898					0.04879881637236849
ILSGMTAGTL	10	Oxidation (M)	_ILSGM(Oxidation (M))TAGTL_		ILSGM(1)TAGTL		ILSGM(49)TAGTL	0	0	1			REV__ENSG00000157637|ENST00000374759|SLC38A10	REV__ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2601318359375	2	490.260068	978.505582	-0.021129	-1.0359E-05	1.5714	0.00077039	1.5503	0.00076003	490.26218423081497	104.07	0.65314	104.07	103.63	104.29	0					35	15	3	0	0	0	0.96965	1	13343	13343		49.442	6.9671	1	176980	+		26853	25142	18520	18558	30899	30899		744			0.015469880973682848
ILSGMTAGTL	10	Oxidation (M)	_ILSGM(Oxidation (M))TAGTL_		ILSGM(1)TAGTL		ILSGM(44)TAGTL	0	0	1			REV__ENSG00000157637|ENST00000374759|SLC38A10	REV__ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.25836181640625	2	490.260068	978.505582	-0.12543	-6.1494E-05	-4.2247	-0.0020712	-4.3501	-0.0021327	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	1.0142	1	13497	13497		44.117	8.4985	1	7056700	+		26854	25142	18520	18558	30900	30900		744			0.015469880973682848
ILSGNDHKHL	10	Unmodified	_ILSGNDHKHL_					0	0	0		FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant	FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant	FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3296508789062	2	567.306729	1132.59891	-1.268	-0.00071932	3.4492	0.0019568	2.1812	0.0012374	567.3089932717239	91.292	0.21261	91.143	91.055	91.268	-0.1487					6	4	2	0	0	0	0.03519	1	11197	11197		54.776	25.627	1	43894			26855	17639	18521	18559	30901	30901					0.03791048594803215
ILSGTAFV	8	Unmodified	_ILSGTAFV_					0	0	0			REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	REV__nc|ENSG00000274611|Q8IZP1-2|TBC1D3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.23297119140625	2	404.234179	806.453805	-0.10547	-4.2633E-05	-3.6241	-0.001465	-3.7296	-0.0015076	404.23247999449234	84.477	3.3436	84.404	82.163	85.507	-0.072769					158	78	4	0	0	0	1.0574	1	10515	10515		26.796	1.3459	1	13931000	+		26856	37202	18522	18560	30902	30902					0.04283612465758324
ILSGVILEV	9	Unmodified	_ILSGVILEV_					0	0	0		ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7970275878906	2	471.797143	941.579734	-0.34274	-0.00016171	0.5594	0.00026392	0.21665	0.00010222	471.7972669938408	85.602	1.3414	85.626	85.035	86.376	0.024162					58	31	3	0	0	0	0.40179	1	10663	10663		65.803	10.299	1	1244500			26857	6879	18523	18561	30903	30903					0.10660699251184269
ILSILTLTL	9	Unmodified	_ILSILTLTL_					0	0	0			REV__nc|ENSG00000150045|Q9NZS2-4|KLRF1	REV__nc|ENSG00000150045|Q9NZS2-4|KLRF1	MSMS	OPSCC_39_ClassI_Rep-3	3	493.8299865722656	2	493.828443	985.642334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.86	1	105.86	105.36	106.36	0.00014496								0	0	0	0.71336	1	13510	13510		17.365	0	1		+		26858	36777	18524	18562	30904	30904					0.148938453193864
ILSISKNLFKC	11	Unmodified	_ILSISKNLFKC_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3695068359375	2	633.367941	1264.72133	0.38898	0.00024637	1.4399	0.00091202	1.8289	0.0011584	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	1.0075	1	11891	11891		35.152	1.2304	1	3178500			26859	18118	18525	18563	30905	30905					0.09955749281994031
ILSKGKTPVL	10	Unmodified	_ILSKGKTPVL_					0	0	0		MCM4|p.A817V|1|0.3|ENSG00000104738|chr8:47975799-47975799|C/T|missense_variant	MCM4|p.A817V|1|0.3|ENSG00000104738|chr8:47975799-47975799|C/T|missense_variant	MCM4|p.A817V|1|0.3|ENSG00000104738|chr8:47975799-47975799|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.800048828125	2	528.344792	1054.67503	-1.4556	-0.00076908	1.6742	0.00088454	0.21854	0.00011546	528.3457409194381	83.656	0.47498	83.656	83.435	83.91	0					14	10	2	0	0	0	0.03519	1	10466	10466		42.396	12.078	1	37543			26860	17958	18526	18564	30906	30906					0.14988052442231492
ILSKLRDL	8	Unmodified	_ILSKLRDL_					0	0	0			REV__GCFC2|p.H773R|1|0.15|ENSG00000005436|chr2:75664694-75664694|T/C|missense_variant	REV__GCFC2|p.H773R|1|0.15|ENSG00000005436|chr2:75664694-75664694|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.78106689453125	2	479.30821	956.601866	1.3401	0.00064232	-1.1698	-0.00056071	0.17026	8.1606E-05	479.3074840565718	64.196	0.62391	64.196	63.954	64.578	0					39	16	3	0	0	0	0.027866	1	7515	7515		20.947	0	1	1043800	+		26861	36065	18527	18565	30907	30907					0.12182923719592509
ILSKRLRKG	9	Unmodified	_ILSKRLRKG_					0	0	0		nc|ENSG00000173894|Q14781-2|CBX2;ENSG00000173894|ENST00000310942|CBX2	nc|ENSG00000173894|Q14781-2|CBX2	nc|ENSG00000173894|Q14781-2|CBX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.81494140625	2	535.861475	1069.7084	-0.29568	-0.00015844	-2.9024	-0.0015553	-3.1981	-0.0017137	535.8598599066686	71.699	0.3317	71.71	71.472	71.803	0.010735					9	8	2	0	0	0	0.024523	1	8630	8630		37.159	12.64	1	74382			26862	8422	18528	18566	30908	30908					0.1763309900479726
ILSLCLLPS	9	Unmodified	_ILSLCLLPS_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.30230712890625	2	479.785721	957.55689	-0.3963	-0.00019014	3.8263	0.0018358	3.43	0.0016456	479.78782566294024	73.221	0.25024	72.956	72.767	73.017	-0.26479					6	5	2	0	0	0	0.024381	1	8603	8603		29.15	0	1	36067			26863	18225	18529	18567	30909	30909					0.0764135686206373
ILSLFLPED	9	Unmodified	_ILSLFLPED_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8;REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.8023071289062	2	523.792058	1045.56956	-0.12557	-6.5771E-05	1.5845	0.00082995	1.4589	0.00076418	523.7931614281116	96.935	0.26689	96.774	96.55	96.817	-0.16106					7	5	2	0	0	0	0.023596	1	11977	11977		73.975	5.49	1	22358	+		26864	20082;22782	18530	18568	30910	30910					0.04860091525961252
ILSLFMCY	8	Unmodified	_ILSLFMCY_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.29736328125	2	495.245375	988.476197	0.18337	9.0813E-05	0.60562	0.00029993	0.78899	0.00039074	495.24554603616394	54.239	0.43723	54.041	53.889	54.327	-0.19739					19	11	2	0	0	0	0.027866	1	5777	5777		14.664	2.4572	1	337590			26865	349	18531	18569	30911	30911					-0.01850247452489384
ILSLFRSV	8	Unmodified	_ILSLFRSV_					0	0	0			REV__ENST00000257789.4_1_6:88362865-88362934:+|nuORF	REV__ENST00000257789.4_1_6:88362865-88362934:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.73138427734375	2	467.789653	933.564752	-0.23302	-0.00010901	0.23825	0.00011145	0.0052292	2.4462E-06	467.7896658721318	60.378	0.64007	60.165	59.817	60.457	-0.21339					25	16	2	0	0	0	0.027866	1	6918	6918		106.42	17.772	1	153290	+		26866	29567	18532	18570	30912	30912					0.09531252173849225
ILSLFRSV	8	Unmodified	_ILSLFRSV_					0	0	0			REV__ENST00000257789.4_1_6:88362865-88362934:+|nuORF	REV__ENST00000257789.4_1_6:88362865-88362934:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7313537597656	2	467.789653	933.564752	-0.77861	-0.00036422	0.55294	0.00025866	-0.22567	-0.00010557	467.7898533382737	60.101	0.63834	60.18	59.863	60.501	0.078884					23	16	2	0	0	0	0.027866	1	6784	6784		82.305	5.4584	1	139650	+		26867	29567	18532	18570	30913	30913					0.09531252173849225
ILSLGLPVPQ	10	Unmodified	_ILSLGLPVPQ_					0	0	0		ZNF2|p.V51L|1|0.18|ENSG00000275111|chr2:95177600-95177600|G/T|missense_variant	ZNF2|p.V51L|1|0.18|ENSG00000275111|chr2:95177600-95177600|G/T|missense_variant	ZNF2|p.V51L|1|0.18|ENSG00000275111|chr2:95177600-95177600|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8214721679688	2	518.823692	1035.63283	-0.82008	-0.00042547	-1.0673	-0.00055376	-1.8874	-0.00097924	519.3244710780716	81.289	0.61325	81.289	81.138	81.751	0					18	14	2	0	0	0	0.03519	1	10186	10186		51.335	12.529	1	417860			26868	38180	18533	18571	30914	30914					0.11644077033838585
ILSLTFHTDM	10	Unmodified	_ILSLTFHTDM_					0	0	0		nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-4|NRP2	nc|ENSG00000118257|O60462-4|NRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3427124023438	2	589.299724	1176.5849	-0.61047	-0.00035975	-0.93437	-0.00055062	-1.5448	-0.00091038	589.2987528288598	93.654	0.56564	93.532	93.06	93.625	-0.12215					16	12	2	0	0	0	0.03519	1	11548	11548		35.618	5.1146	1	46300			26869	3674	18534	18572	30915	30915					0.003666350515004524
ILSMELLKV	9	Unmodified	_ILSMELLKV_					0	0	0			REV__ENST00000315691.7_1_3:143708817-143709024:+|nuORF	REV__ENST00000315691.7_1_3:143708817-143709024:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.802490234375	2	523.319928	1044.6253	0.46134	0.00024143	-3.6117	-0.0018901	-3.1504	-0.0016487	523.3178763471177	96.72	0.83125	96.583	96.183	97.014	-0.13671					36	18	3	0	0	0	0.023417	1	11977	11977		79.451	13.648	1	118970	+		26870	30270	18535	18573	30916	30916					0.10477601441925799
ILSMRKAML	9	Unmodified	_ILSMRKAML_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7761840820312	2	531.811748	1061.60894	-0.80992	-0.00043072	-1.8148	-0.00096513	-2.6247	-0.0013959	532.3110451946837	82.869	0.25804	82.895	82.788	83.046	0.026558					7	5	2	0	0	0	0.022587	1	10264	10264		96.19	2.995	1	36521	+		26871	37259	18536	18574	30917	30917					0.08060197004169822
ILSMRKAML	9	Unmodified	_ILSMRKAML_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.811748	1061.60894	0.41317	0.00021973	-6.942	-0.0036918	-6.5288	-0.0034721	532.30966468376	82.983	1.08	82.763	82.347	83.427	-0.22015	-0.029952	-0.00060397	NaN	96.19	29	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74465	+		26872	37259	18536	18574							0.08060197004169822
ILSNLPVCV	9	Unmodified	_ILSNLPVCV_					0	0	0		chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|65	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|65	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|65	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2774658203125	2	479.275521	956.536489	0.41467	0.00019874	2.5663	0.00123	2.981	0.0014287	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	0.90698	1	10461	10461		31.955	2.8053	1	1015600			26873	381	18537	18575	30918	30918					0.05648186202245142
ILSPSRGR	8	Unmodified	_ILSPSRGR_					0	0	0		ENST00000525088.5_1_11:67196016-67196232:+|nuORF	ENST00000525088.5_1_11:67196016-67196232:+|nuORF	ENST00000525088.5_1_11:67196016-67196232:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.2795715332031	2	443.266876	884.519199	-0.16677	-7.3924E-05	-4.4511	-0.001973	-4.6178	-0.0020469	443.26448913009557	55.068	0.29042	54.837	54.565	54.855	-0.23087					10	7	2	0	0	0	0.027866	1	5855	5855		12.207	0	1	85043			26874	16081	18538	18576	30919	30919					0.07232026711471917
ILSPYHPPK	9	Unmodified	_ILSPYHPPK_					0	0	0		HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|4|1|sense;HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|7|2|sense	HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|4|1|sense	HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|4|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.2640991210938	2	526.300384	1050.58622	-0.30552	-0.00016079	-2.1849	-0.0011499	-2.4904	-0.0013107	526.2985995310772	48.069	0.70835	48.135	47.777	48.486	0.066795					31	19	2	0	0	0	0.024263	1	4849	4849		51.335	12.083	1	1024200			26875	17720	18539	18577	30920	30920					0.06294637202563536
ILSQAWGRW	9	Unmodified	_ILSQAWGRW_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.5916748046875	2	558.801083	1115.58761	-0.42569	-0.00023788	-3.6615	-0.002046	-4.0872	-0.0022839	558.7989410875534	42.282	0.79163	42.052	41.725	42.517	-0.23029					59	21	4	0	0	0	0.024436	1	3814	3814		30.504	1.3336	1	2162100			26876	17066	18540	18578	30921	30921					0.03444271291300538
ILSQHLFPPQS	11	Unmodified	_ILSQHLFPPQS_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	633.369384765625	2	633.845687	1265.67682	-0.45709	-0.00028972	-2.4377	-0.0015451	-2.8948	-0.0018348	634.3448833053059	96.847	0.22253	96.686	96.595	96.817	-0.16106					6	4	2	0	0	0	0.024756	1	11976	11976		36.447	0	1	33766	+		26877	26887	18541	18579	30922	30922					0.05461061460187011
ILSQHLFPPQS	11	Unmodified	_ILSQHLFPPQS_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	633.36962890625	2	633.845687	1265.67682	-0.46944	-0.00029755	1.8579	0.0011776	1.3885	0.00088008	633.8469463833538	96.716	0.22136	96.557	96.42	96.641	-0.15924					5	4	2	0	0	0	0.024756	1	11940	11940		36.447	19.729	1	16027	+		26878	26887	18541	18579	30923	30923					0.05461061460187011
ILSQYITFV	9	Unmodified	_ILSQYITFV_					0	0	0		ENST00000463772.5_1_1:165867222-165877057:+|nuORF;ENST00000479872.5_1_1:165872390-165877057:+|nuORF;nc|ENSG00000143179|Q9BZX2-2|UCK2;ENSG00000143179|ENST00000367879|UCK2	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.30810546875	2	542.307875	1082.6012	-0.23999	-0.00013015	0.49816	0.00027016	0.25817	0.00014001	542.3081424397558	87.734	1.6141	87.734	87.364	88.978	0					96	38	4	0	0	0	0.013094	2	11051	11040;11051		171.38	63.297	1	2778800			26879	5618	18542	18580	30924;30925	30925					0.06320084279900584
ILSQYITFV	9	Unmodified	_ILSQYITFV_					0	0	0		ENST00000463772.5_1_1:165867222-165877057:+|nuORF;ENST00000479872.5_1_1:165872390-165877057:+|nuORF;nc|ENSG00000143179|Q9BZX2-2|UCK2;ENSG00000143179|ENST00000367879|UCK2	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3078002929688	2	542.307875	1082.6012	-0.18148	-9.8416E-05	0.1583	8.5849E-05	-0.023173	-1.2567E-05	542.3079997142784	87.683	1.6578	87.648	87.236	88.894	-0.035355					101	39	4	0	0	0	0.013887	3	10998	10998;11009;11022		180.93	81.551	1	2618000			26880	5618	18542	18580	30926;30927;30928	30926					0.06320084279900584
ILSQYITFV	9	Unmodified	_ILSQYITFV_					0	0	0		ENST00000463772.5_1_1:165867222-165877057:+|nuORF;ENST00000479872.5_1_1:165872390-165877057:+|nuORF;nc|ENSG00000143179|Q9BZX2-2|UCK2;ENSG00000143179|ENST00000367879|UCK2	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.3078002929688	2	542.307875	1082.6012	0.097478	5.2863E-05	-0.18257	-9.9011E-05	-0.085096	-4.6148E-05	542.3077892041974	87.755	1.6231	87.773	87.26	88.883	0.018555					101	38	4	0	0	0	0.015752	3	10967	10957;10967;10982		158.07	75.834	1	2856800			26881	5618	18542	18580	30929;30930;30931	30930					0.06320084279900584
ILSQYITFV	9	Unmodified	_ILSQYITFV_					0	0	0		ENST00000463772.5_1_1:165867222-165877057:+|nuORF;ENST00000479872.5_1_1:165872390-165877057:+|nuORF;nc|ENSG00000143179|Q9BZX2-2|UCK2;ENSG00000143179|ENST00000367879|UCK2	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.307875	1082.6012	-0.52587	-0.00028518	-1.4282	-0.0007745	-1.954	-0.0010597	542.3081026312678	87.726	1.7668	87.548	86.48	88.247	-0.17875	-0.088839	-0.001653	NaN	171.38	69	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393260			26882	5618	18542	18580							0.06320084279900584
ILSQYITFV	9	Unmodified	_ILSQYITFV_					0	0	0		ENST00000463772.5_1_1:165867222-165877057:+|nuORF;ENST00000479872.5_1_1:165872390-165877057:+|nuORF;nc|ENSG00000143179|Q9BZX2-2|UCK2;ENSG00000143179|ENST00000367879|UCK2	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.307875	1082.6012	0.14346	7.7798E-05	-1.6996	-0.00092172	-1.5562	-0.00084392	542.3076429184296	87.647	1.9379	87.51	86.501	88.439	-0.13613	-0.12616	-0.0019475	NaN	171.38	68	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382170			26883	5618	18542	18580							0.06320084279900584
ILSQYITFV	9	Unmodified	_ILSQYITFV_					0	0	0		ENST00000463772.5_1_1:165867222-165877057:+|nuORF;ENST00000479872.5_1_1:165872390-165877057:+|nuORF;nc|ENSG00000143179|Q9BZX2-2|UCK2;ENSG00000143179|ENST00000367879|UCK2	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	ENST00000463772.5_1_1:165867222-165877057:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.307875	1082.6012	-0.71215	-0.00038621	-0.061749	-3.3487E-05	-0.7739	-0.00041969	542.308282097874	87.744	1.8328	87.606	86.399	88.232	-0.13734	-0.030118	-0.00017099	NaN	171.38	59	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380840			26884	5618	18542	18580							0.06320084279900584
ILSRVTEID	9	Unmodified	_ILSRVTEID_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7586059570312	2	523.298039	1044.58152	-0.092576	-4.8445E-05	-0.20608	-0.00010784	-0.29866	-0.00015629	523.2979637566034	41.777	0.48354	41.547	41.313	41.797	-0.23029					21	12	2	0	0	0	0.024405	1	3666	3666		27.882	0	1	293050	+		26885	21703	18543	18581	30932	30932					0.061017082691250835
ILSSLLLN	8	Unmodified	_ILSSLLLN_					0	0	0			REV__nc|ENSG00000158691|O43309-2|ZSCAN12	REV__nc|ENSG00000158691|O43309-2|ZSCAN12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.77484130859375	2	436.776211	871.537869	-0.98134	-0.00042863	-2.2927	-0.0010014	-3.2741	-0.00143	436.7751362763108	90.163	2.4309	90.008	89.479	91.91	-0.1552					175	57	5	0	0	0	1.0133	1	11147	11147		35.201	3.2459	1	32770000	+		26886	36820	18544	18582	30933	30933					0.09696143562678117
ILSSLLLN	8	Unmodified	_ILSSLLLN_					0	0	0			REV__nc|ENSG00000158691|O43309-2|ZSCAN12	REV__nc|ENSG00000158691|O43309-2|ZSCAN12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.77484130859375	2	436.776211	871.537869	0.68058	0.00029726	-3.9115	-0.0017084	-3.2309	-0.0014112	436.77442546630624	90.156	2.1751	90.018	89.532	91.707	-0.13824					144	51	5	0	0	0	1.0133	1	11072	11072		35.201	6.9464	1	20832000	+		26887	36820	18544	18582	30934	30934					0.09696143562678117
ILSSQVII	8	Unmodified	_ILSSQVII_					0	0	0			REV__ENSG00000128519|ENST00000249284|TAS2R16	REV__ENSG00000128519|ENST00000249284|TAS2R16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7750244140625	2	436.776211	871.537869	-0.55494	-0.00024239	-2.6294	-0.0011485	-3.1844	-0.0013909	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	1.0239	1	11004	11004		33.516	1.5607	1	24367000	+		26888	22987	18545	18583	30935	30935					0.09696143562666748
ILSTILKIN	9	Unmodified	_ILSTILKIN_					0	0	0		ENSG00000181761|ENST00000313472|OR8H3;ENSG00000181693|ENST00000641600|OR8H1	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2819519042969	2	507.831517	1013.64848	-0.058473	-2.9694E-05	3.5436	0.0017995	3.4851	0.0017698	508.33457725456844	105.16	0.61012	105.16	104.93	105.54	0.00096893					24	19	2	0	0	0	0.024436	1	13433	13433		30.504	17.544	1	185440			26889	9066	18546	18584	30936	30936					0.1422036355089631
ILSTILKIN	9	Unmodified	_ILSTILKIN_					0	0	0		ENSG00000181761|ENST00000313472|OR8H3;ENSG00000181693|ENST00000641600|OR8H1	ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181761|ENST00000313472|OR8H3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.831517	1013.64848	0.12937	6.5699E-05	3.3366	0.0016944	3.466	0.0017601	507.83319656623024	105.16	0.7258	105.16	104.92	105.65	0	0.088165	-0.00066269	NaN	30.504	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178340			26890	9066	18546	18584							0.1422036355089631
ILSTKKIS	8	Unmodified	_ILSTKKIS_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.2884521484375	2	445.289485	888.564418	-0.64365	-0.00028661	-2.3307	-0.0010379	-2.9744	-0.0013245	445.2883149011195	90.031	1.1563	90.031	89.605	90.762	0					96	27	5	0	0	0	1.0574	1	11374	11374		19.36	1.0356	1	2663600	+		26891	22639	18547	18585	30937	30937					0.11567832453999927
ILSTKKIS	8	Unmodified	_ILSTKKIS_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	445.289485	888.564418	-0.64365	-0.00028661	-2.3307	-0.0010379	-2.9744	-0.0013245	445.2883149011195	90.031	1.1563	90.031	89.605	90.762	0	-0.00087127	0.00039767	NaN	19.36	96	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2663600	+		26892	22639	18547	18585							0.11567832453999927
ILSTKKIS	8	Unmodified	_ILSTKKIS_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	445.289485	888.564418	0.32759	0.00014587	-3.2991	-0.0014691	-2.9715	-0.0013232	445.2878785113918	90.033	1.2809	90.017	89.667	90.948	-0.016716	-0.015501	-0.00046475	NaN	19.36	104	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2920200	+		26893	22639	18547	18585							0.11567832453999927
ILSTKKIS	8	Unmodified	_ILSTKKIS_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	445.289485	888.564418	0.23045	0.00010262	-3.2754	-0.0014585	-3.045	-0.0013559	445.287906738792	90.01	1.1123	90.023	89.715	90.827	0.013443	-0.0089189	-0.00044365	NaN	19.36	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2232300	+		26894	22639	18547	18585							0.11567832453999927
ILSTKKIS	8	Unmodified	_ILSTKKIS_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	445.289485	888.564418	-0.94736	-0.00042185	-2.0135	-0.00089657	-2.9608	-0.0013184	445.28846590540195	90.195	1.1136	90.04	89.652	90.766	-0.1552	0.0074893	0.00068024	NaN	19.36	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2112300	+		26895	22639	18547	18585							0.11567832453999927
ILSTKKIS	8	Unmodified	_ILSTKKIS_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	445.289485	888.564418	-0.61988	-0.00027602	-2.3243	-0.001035	-2.9442	-0.001311	445.28834409344853	90.19	0.99576	90.065	89.676	90.671	-0.12512	0.032458	0.00040342	NaN	19.36	65	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1310600	+		26896	22639	18547	18585							0.11567832453999927
ILSTKKIS	8	Unmodified	_ILSTKKIS_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	445.289485	888.564418	0.42605	0.00018972	-3.4594	-0.0015404	-3.0334	-0.0013507	445.28782579564347	90.156	0.91521	90.017	89.705	90.621	-0.13824	-0.014656	-0.0006075	NaN	19.36	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1077500	+		26897	22639	18547	18585							0.11567832453999927
ILSVVRPAT	9	Unmodified	_ILSVVRPAT_					0	0	0			REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3057556152344	2	478.300384	954.586216	0.94908	0.00045394	2.75	0.0013153	3.6991	0.0017693	478.30135259071534	18.791	0.54407	18.635	18.544	19.088	-0.15637					13	10	2	0	0	0	0.024506	1	337	337		38.806	0	1	90126	+		26898	35325	18548	18586	30938	30938					0.10710637202555517
ILSVVRPAT	9	Unmodified	_ILSVVRPAT_					0	0	0			REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.300384	954.586216	3.361	0.0016075	8.1132	0.0038805	11.474	0.0054881	478.30408656240644	18.309	0.44186	18.309	18.087	18.529	0	-0.13915	-0.00058951	NaN	30.504	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56146	+		26899	35325	18548	18586							0.10710637202555517
ILSVVRPAT	9	Unmodified	_ILSVVRPAT_					0	0	0			REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.300384	954.586216	0.48205	0.00023056	11.085	0.005302	11.567	0.0055326	478.3055870676706	18.471	0.39462	18.339	18.154	18.549	-0.13147	-0.10818	0.0022535	NaN	30.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72737	+		26900	35325	18548	18586							0.10710637202555517
ILSVVRPAT	9	Unmodified	_ILSVVRPAT_					0	0	0			REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.300384	954.586216	4.0574	0.0019407	7.6804	0.0036735	11.738	0.0056142	478.3039301676594	18.474	0.34479	18.538	18.353	18.698	0.063307	0.090124	-0.0010035	NaN	30.504	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61355	+		26901	35325	18548	18586							0.10710637202555517
ILSVVRPAT	9	Unmodified	_ILSVVRPAT_					0	0	0			REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	REV__ENST00000567712.1_1_16:50059524-50059614:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.300384	954.586216	2.825	0.0013512	8.9338	0.004273	11.759	0.0056242	478.30450379970085	18.66	0.64495	18.417	18.224	18.869	-0.24256	-0.030251	0.00019547	NaN	30.504	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127910	+		26902	35325	18548	18586							0.10710637202555517
ILSWIIGFL	9	Unmodified	_ILSWIIGFL_					0	0	0		OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant;ENSG00000176246|ENST00000315683|OR4L1	OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant	OR4L1|p.I298*|1|0.29|ENSG00000176246|chr14:20060934-20060934|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3218383789062	2	531.323328	1060.6321	-1.3639	-0.00072469	-2.8807	-0.0015306	-4.2447	-0.0022553	531.3218740313993	75.157	1.0121	75.157	74.757	75.769	0					56	26	3	0	0	0	0.64155	1	9218	9218		50.025	5.9077	1	1421800			26903	8625	18549	18587	30939	30939					0.10421282384822916
ILSYDGFCCPA	11	Unmodified	_ILSYDGFCCPA_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|114|2|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|114|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.8016357421875	2	594.756835	1187.49912	-1.1435	-0.00068009	-1.2999	-0.00077311	-2.4434	-0.0014532	594.7562447556063	36.019	0.33896	35.814	35.752	36.091	-0.20518					11	9	2	0	0	0	0.024752	1	2806	2806		32.812	7.2384	1	325020	+		26904	36281	18550	18588	30940	30940					-0.08713273125658816
ILTASADRTV	10	Unmodified	_ILTASADRTV_					0	0	0		ENST00000507239.5_1_5:76754877-76788045:-|nuORF;ENST00000507452.5_1_5:76747118-76788033:-|nuORF;nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41	ENST00000507239.5_1_5:76754877-76788045:-|nuORF	ENST00000507239.5_1_5:76754877-76788045:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3028564453125	2	523.795663	1045.57677	-0.28284	-0.00014815	-0.9716	-0.00050892	-1.2544	-0.00065707	523.7955107214297	86.877	0.54768	86.877	86.605	87.152	0					43	12	5	0	0	0	0.03519	1	10946	10946		30.318	15.453	1	3477600			26905	7246	18551	18589	30941	30941					0.05580824126354855
ILTCKHFF	8	Unmodified	_ILTCKHFF_					0	0	0		ENSG00000188050|ENST00000340112|RNF133;ENSG00000235631|ENST00000434824|RNF148	ENSG00000188050|ENST00000340112|RNF133;ENSG00000235631|ENST00000434824|RNF148	ENSG00000188050|ENST00000340112|RNF133	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.245849609375	2	504.770406	1007.52626	-0.1506	-7.6016E-05	2.5717	0.0012981	2.4211	0.0012221	504.7715291973592	56.733	0.65388	56.566	56.204	56.858	-0.1672					23	12	2	0	0	0	0.027866	1	6128	6128		40.573	0	1	670020			26906	9689;10733	18552	18590	30942	30942					0.022796232676796535
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2921447753906	2	480.292225	958.569897	0.50864	0.0002443	-0.87223	-0.00041892	-0.36359	-0.00017463	480.29180845066077	55.943	1.9922	55.943	55.353	57.345	0					153	55	5	0	0	0	0.013924	7	6194	6184;6194;6205;6217;6229;6243;6257		167.23	62.482	1	29391000			26907	7717	18553	18591	30943;30944;30945;30946;30947;30948;30949	30944					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.29266357421875	2	480.292225	958.569897	-0.07088	-3.4043E-05	-0.2363	-0.00011349	-0.30718	-0.00014754	480.2921106520151	56.068	2.0702	55.912	55.293	57.364	-0.15601					159	56	5	0	0	0	0.013924	7	6181	6172;6181;6193;6205;6217;6231;6245		167.23	59.141	1	25389000			26908	7717	18553	18591	30950;30951;30952;30953;30954;30955;30956	30951					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2921142578125	2	480.292225	958.569897	-0.83087	-0.00039906	0.5666	0.00027214	-0.26426	-0.00012692	480.29248382202417	55.78	2.0645	55.878	55.22	57.284	0.098003					153	56	5	0	0	0	0.025498	7	6080	6080;6088;6100;6112;6124;6137;6150		145.16	36.774	1	26945000			26909	7717	18553	18591	30957;30958;30959;30960;30961;30962;30963	30957					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2925109863281	2	480.292225	958.569897	-0.2066	-9.9226E-05	-0.2429	-0.00011666	-0.44949	-0.00021589	480.29212058635886	56.031	1.805	55.875	55.535	57.34	-0.15656					145	47	5	0	0	0	0.016542	6	6024	6024;6034;6046;6058;6070;6082		154.12	51.151	1	44918000			26910	7717	18553	18591	30964;30965;30966;30967;30968;30969	30964					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2920227050781	2	480.292225	958.569897	0.012359	5.936E-06	-0.58138	-0.00027923	-0.56902	-0.0002733	480.2919695789734	56.153	1.6709	55.937	55.562	57.233	-0.21607					145	44	5	0	0	0	0.016542	6	6053	6043;6053;6063;6075;6087;6099		154.12	52.518	1	49307000			26911	7717	18553	18591	30970;30971;30972;30973;30974;30975	30971					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2920837402344	2	480.292225	958.569897	-0.52647	-0.00025286	-0.010158	-4.879E-06	-0.53663	-0.00025774	480.29223536899406	56.156	1.8394	55.941	55.528	57.368	-0.21551					144	48	5	0	0	0	0.013924	6	6051	6031;6041;6051;6063;6075;6087		167.23	50.325	1	51205000			26912	7717	18553	18591	30976;30977;30978;30979;30980;30981	30978					0.0889551124580521
ILTDRQLLL	9	Unmodified	_ILTDRQLLL_					0	0	0		ENST00000540317.5_1_11:61117031-61120447:-|nuORF	ENST00000540317.5_1_11:61117031-61120447:-|nuORF	ENST00000540317.5_1_11:61117031-61120447:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7760620117188	2	542.839874	1083.66519	-0.29638	-0.00016088	-0.28512	-0.00015478	-0.5815	-0.00031566	542.839501987793	67.838	1.0727	67.838	67.568	68.641	0					44	27	3	0	0	0	0.023417	1	8112	8112		79.451	16.145	1	841120			26913	16420	18554	18592	30982	30982					0.1267086443685912
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.812744140625	2	485.812793	969.611034	-0.0016193	-7.8669E-07	-0.40187	-0.00019523	-0.40349	-0.00019602	485.8126380555575	89.123	2.245	89.123	88.725	90.97	0					101	53	5	0	0	0	0.039359	3	11228	11228;11240;11252		134.12	32.907	1	9462000			26914	3334	18555	18593	30983;30984;30985	30983					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.81268310546875	2	485.812793	969.611034	0.44711	0.00021721	-0.92914	-0.00045139	-0.48203	-0.00023418	485.812378927826	89.075	2.2057	89.054	88.737	90.943	-0.021645					101	52	5	0	0	0	0.026982	3	11206	11194;11206;11218		143.97	42.763	1	7668000			26915	3334	18555	18593	30986;30987;30988	30987					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MSMS	OPSCC_39_ClassI_Rep-3	3	485.8125305175781	2	485.812793	969.611034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.028	1	89.044	88.544	89.544	0.015907								0	0	0	0.048403	1	11153	11153		109.7	17.513	1				26916	3334	18555	18593	30989	30989					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MSMS	OPSCC_39_ClassI_Rep-3	3	485.8125	2	485.812793	969.611034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.104	1	89.12	88.62	89.62	0.015907								0	0	0	0.014428	1	11164	11164		143.97	19.986	1				26917	3334	18555	18593	30990	30990					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MSMS	OPSCC_39_ClassI_Rep-3	3	485.8122253417969	2	485.812793	969.611034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.186	1	89.202	88.702	89.702	0.015907								0	0	0	0.017851	1	11176	11176		134.12	32.907	1				26918	3334	18555	18593	30991	30991					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MSMS	OPSCC_39_ClassI_Rep-3	3	485.81268310546875	2	485.812793	969.611034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.27	1	89.286	88.786	89.786	0.015907								0	0	0	0.083667	1	11188	11188		96.048	16.108	1				26919	3334	18555	18593	30992	30992					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.812744140625	2	485.812793	969.611034	-0.59229	-0.00028774	0.3433	0.00016678	-0.24899	-0.00012096	485.8128389294506	89.128	1.6184	88.965	88.596	90.214	-0.1626					112	38	4	0	0	0	0.075871	5	10876	10853;10864;10876;10888;10900		119.22	33.891	1	3930500			26920	3334	18555	18593	30993;30994;30995;30996;30997	30995					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.8126220703125	2	485.812793	969.611034	-0.18183	-8.8337E-05	-0.065556	-3.1848E-05	-0.24739	-0.00012019	485.81265533177697	89.103	2.093	88.976	88.617	90.71	-0.12774					125	49	4	0	0	0	0.026982	6	10889	10876;10889;10902;10914;10927;10939		143.97	42.763	1	4180000			26921	3334	18555	18593	30998;30999;31000;31001;31002;31003	30999					0.12501272285282994
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6;BCL6|p.Y293Tfs*31|1|0.29|ENSG00000113916|chr3:187729529-187729529|G/-|frameshift_variant	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.81280517578125	2	485.812793	969.611034	0.40498	0.00019674	-0.6947	-0.00033749	-0.28972	-0.00014075	485.8123485160711	89.125	2.098	88.987	88.607	90.705	-0.13762					128	49	4	0	0	0	0.10362	3	10855	10855;10868;10881		109.7	16.108	1	3117100			26922	3334	18555	18593	31004;31005;31006	31004					0.12501272285282994
ILTEGDLTL	9	Unmodified	_ILTEGDLTL_					0	0	0		nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000065923|ENST00000616978|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7726135253906	2	487.773865	973.533177	0.77159	0.00037636	-0.76823	-0.00037472	0.0033532	1.6356E-06	487.7733824151196	85.689	1.5032	85.539	85.201	86.704	-0.14967					66	34	3	0	0	0	0.25032	1	10414	10414		82.305	10.927	1	2491300			26923	1324	18556	18594	31007	31007					0.04535214629231632
ILTESEIKL	9	Unmodified	_ILTESEIKL_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3101196289062	2	523.310615	1044.60668	-1.4414	-0.00075428	1.0975	0.00057431	-0.3439	-0.00017996	523.311031348205	60.548	1.7662	60.548	60.066	61.832	0					88	46	5	0	0	0	0.027092	2	6959	6959;6967		143.89	30.475	1	6840500			26924	3593	18557	18595	31008;31009	31008					0.08615763071702531
ILTESEIKL	9	Unmodified	_ILTESEIKL_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3108520507812	2	523.310615	1044.60668	-0.82121	-0.00042975	0.44127	0.00023092	-0.37994	-0.00019883	523.3107163286533	60.804	1.3516	60.591	60.273	61.625	-0.21339					71	35	4	0	0	0	0.014034	3	6972	6961;6972;6984		166.68	27.853	1	7101900			26925	3593	18557	18595	31010;31011;31012	31011					0.08615763071702531
ILTESEIKL	9	Unmodified	_ILTESEIKL_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3104248046875	2	523.310615	1044.60668	-1.781	-0.000932	1.4373	0.00075215	-0.34368	-0.00017985	523.3112618695953	60.406	1.3556	60.485	60.203	61.558	0.078888					74	35	4	0	0	0	0.016758	3	6887	6863;6874;6887		153.04	27.222	1	7585900			26926	3593	18557	18595	31013;31014;31015	31015					0.08615763071702531
ILTETINTV	9	Unmodified	_ILTETINTV_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2861633300781	2	502.28714	1002.55973	-0.6001	-0.00030142	-0.60425	-0.00030351	-1.2044	-0.00060493	502.2874198153054	63.118	0.67027	62.879	62.534	63.204	-0.23926					29	15	3	0	0	0	0.2508	3	7332	7323;7332;7347		82.241	20.542	1	3049900			26927	5282	18558	18596	31016;31017;31018	31017					0.05854903520582866
ILTETINTV	9	Unmodified	_ILTETINTV_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MSMS	OPSCC_39_ClassI_Rep-3	3	502.286376953125	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.823	1	62.877	62.377	63.377	0.054104								0	0	0	0.025861	1	7241	7241		122.18	29.985	1				26928	5282	18558	18596	31019	31019					0.05854903520582866
ILTFNLDI	8	Unmodified	_ILTFNLDI_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000543961.1_1_12:25956587-25956887:+|nuORF;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF;TDG|p.D126N|1|0.46|ENSG00000139372|chr12:103980040-103980040|G/A|missense_variant	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.773681640625	2	474.773668	947.532783	0.72497	0.0003442	-0.9589	-0.00045526	-0.23393	-0.00011106	474.77314857512465	99.207	1.1754	99.203	98.724	99.899	-0.0038757					63	26	3	0	0	0	0.74904	2	12609	12597;12609		63.306	7.8021	1	2143100			26929	5332	18559	18597	31020;31021	31021					0.056918397000458754
ILTGLPRGPRG	11	Unmodified	_ILTGLPRGPRG_					0	0	0			REV__ENST00000307720.3_1_4:159642617-159644511:-|nuORF	REV__ENST00000307720.3_1_4:159642617-159644511:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.8258056640625	2	568.848564	1135.68258	-0.17478	-9.9421E-05	-3.3263	-0.0018922	-3.5011	-0.0019916	568.8464294722235	75.103	1.1851	74.859	74.258	75.443	-0.24455					64	29	3	0	0	0	0.02479	1	9138	9138		37.508	0	1	561850	+		26930	30144	18560	18598	31022	31022					0.12016204762517191
ILTIFRDKM	9	Unmodified	_ILTIFRDKM_					0	0	0			REV__ENST00000496081.5_1_6:29912565-29912706:+|nuORF	REV__ENST00000496081.5_1_6:29912565-29912706:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.82568359375	2	568.828452	1135.64235	-1.1643	-0.0006623	-1.9108	-0.0010869	-3.0752	-0.0017492	568.8272441605869	74.638	1.1544	74.648	74.095	75.249	0.0096512					80	27	4	0	0	0	0.48817	1	9066	9066		60.118	1.3363	1	2491800	+		26931	33816	18561	18599	31023	31023					0.07995522047735903
ILTILLEV	8	Unmodified	_ILTILLEV_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.28851318359375	2	457.302062	912.58957	0.44418	0.00020313	2.4637	0.0011266	2.9079	0.0013298	457.3032276435268	93.866	0.39613	93.866	93.809	94.205	0					13	9	2	0	0	0	0.027866	1	11972	11972		19.36	5.5846	1	317940	+		26932	25604	18562	18600	31024	31024					0.1297788725656801
ILTILLEV	8	Unmodified	_ILTILLEV_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2894287109375	2	457.302062	912.58957	-0.2323	-0.00010623	3.5809	0.0016376	3.3486	0.0015313	457.3038146936597	93.823	0.28857	93.829	93.562	93.85	0.0059814					9	6	2	0	0	0	0.027866	1	11831	11831		20.482	11.66	1	261090	+		26933	25604	18562	18600	31025	31025					0.1297788725656801
ILTIPLVVV	9	Unmodified	_ILTIPLVVV_					0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.832275390625	2	483.833529	965.652505	0.52705	0.000255	-0.49575	-0.00023986	0.031296	1.5142E-05	483.83317749499423	103.23	0.48103	103.06	102.84	103.32	-0.17034					19	11	2	0	0	0	0.75282	1	12828	12828		42.474	8.9589	1	178510	+		26934	25078	18563	18601	31026	31026					0.1683045304461075
ILTLLALGSI	10	Unmodified	_ILTLLALGSI_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.81072998046875	2	507.333893	1012.65323	0.95292	0.00048345	-3.692	-0.0018731	-2.7391	-0.0013896	507.33189438606547	18.154	0.34339	17.998	17.805	18.148	-0.15637					12	6	3	0	0	0	0.03519	1	256	256		35.618	0	1	58558			26935	7181	18564	18602	31027	31027					0.14741247693655168
ILTLSFKGLAD	11	Unmodified	_ILTLSFKGLAD_					0	0	0			REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3429565429688	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0238	1	11828	11828		31.53	1.0262	1	12648000	+		26936	22277	18565	18603	31028	31028					0.09415427371436635
ILTMDMLTV	9	Unmodified	_ILTMDMLTV_					0	0	0		ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	ENSG00000095380|ENST00000210444|NANS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.8110961914062	2	518.774496	1035.53444	-0.65293	-0.00033872	1.4224	0.0007379	0.76947	0.00039918	518.7750659855865	60.875	0.8579	60.662	60.531	61.389	-0.21339					29	22	2	0	0	0	0.024506	1	6985	6985		23.042	4.7181	1	520110			26937	2024	18566	18604	31029	31029					0.018093894021149026
ILTNNQQVV	9	Unmodified	_ILTNNQQVV_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3098754882812	2	514.790381	1027.56621	1.6555	0.00085222	-2.1737	-0.001119	-0.51825	-0.00026679	514.7892028613426	59.114	0.68242	58.927	58.758	59.44	-0.18705					34	18	3	0	0	0	0.024539	1	6770	6770		20.947	0	1	539150	+		26938	20017	18568	18605	31030	31030					0.05352841471949432
ILTQGPDLDL	10	Unmodified	_ILTQGPDLDL_					0	0	0			REV__ENSG00000119888|ENST00000263735|EPCAM	REV__ENSG00000119888|ENST00000263735|EPCAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3128662109375	2	542.797872	1083.58119	-0.54722	-0.00029703	3.4063	0.0018489	2.8591	0.0015519	543.3013394833928	69.569	0.93807	69.569	69.016	69.954	0					35	23	2	0	0	0	0.03519	1	8327	8327		36.447	13.404	1	851440	+		26939	22494	18569	18606	31031	31031					0.04274288549299854
ILTRGDPLLK	10	Unmodified	_ILTRGDPLLK_					0	0	0			REV__nc|ENSG00000140332|Q04726-2|TLE3	REV__nc|ENSG00000140332|Q04726-2|TLE3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.3533325195312	2	563.353148	1124.69174	-0.95285	-0.00053679	1.378	0.00077628	0.42511	0.00023949	563.3536482784735	74.197	2.2656	74.207	73.558	75.823	0.0096512					110	56	3	0	0	0	0.77808	1	9006	9006		62.107	1.1355	1	5676000	+		26940	24005	18570	18607	31032	31032					0.13438553328182934
ILTRIGQS	8	Unmodified	_ILTRIGQS_					0	0	0			REV__ENSG00000152705|ENST00000282611|CATSPER3	REV__ENSG00000152705|ENST00000282611|CATSPER3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.28741455078125	2	444.269084	886.523616	0.76717	0.00034083	-0.45914	-0.00020398	0.30803	0.00013685	444.26865165920725	18.367	0.49181	18.211	17.904	18.396	-0.15637					14	9	2	0	0	0	0.027866	1	268	268		17.365	0.89182	1	30527	+		26941	24860	18571	18608	31033	31033					0.07581491134396856
ILTSDPVVMA	10	Unmodified	_ILTSDPVVMA_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3033447265625	2	523.283543	1044.55253	0.62106	0.00032499	2.1731	0.0011372	2.7942	0.0014622	523.2856428723601	87.317	0.55013	87.181	87.009	87.559	-0.13613					17	12	3	0	0	0	0.03519	1	10647	10647		44.117	0	1	251550	+		26942	27624	18572	18609	31034	31034					0.032038476485013234
ILTSDPVVMA	10	Unmodified	_ILTSDPVVMA_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3035278320312	2	523.283543	1044.55253	0.11455	5.9945E-05	3.6796	0.0019255	3.7941	0.0019854	523.2845007523573	87.429	0.74675	87.291	87.038	87.784	-0.13734					24	17	2	0	0	0	0.03519	1	10632	10632		45.952	3.5558	1	141100	+		26943	27624	18572	18609	31035	31035					0.032038476485013234
ILTSDVPQI	9	Unmodified	_ILTSDVPQI_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2844543457031	2	493.281857	984.549162	-0.20827	-0.00010274	0.26286	0.00012966	0.054581	2.6924E-05	493.2818010870614	71.277	0.93298	71.004	70.657	71.59	-0.27277					46	21	3	0	0	0	0.11092	1	8321	8321		108.09	8.7125	1	1564100			26944	2631	18573	18610	31036	31036					0.056269208661547054
ILTSEFSF	8	Unmodified	_ILTSEFSF_					0	0	0			REV__ZNF345|p.A188T|1|0.33|ENSG00000251247|chr19:36877392-36877392|G/A|missense_variant	REV__ZNF345|p.A188T|1|0.33|ENSG00000251247|chr19:36877392-36877392|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2944641113281	2	472.242201	942.469849	0.17857	8.4327E-05	-4.2856	-0.0020238	-4.107	-0.0019395	472.2400462871258	32.42	0.58656	32.183	31.91	32.497	-0.23666					30	13	3	0	0	0	0.027866	1	2214	2214		74.517	0	1	570500	+		26945	37804	18574	18611	31037	31037					-0.0036872608798148576
ILTSEFSF	8	Unmodified	_ILTSEFSF_					0	0	0			REV__ZNF345|p.A188T|1|0.33|ENSG00000251247|chr19:36877392-36877392|G/A|missense_variant	REV__ZNF345|p.A188T|1|0.33|ENSG00000251247|chr19:36877392-36877392|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2941589355469	2	472.242201	942.469849	0.52795	0.00024932	-4.4349	-0.0020943	-3.9069	-0.001845	472.23990765026366	32.447	0.75782	32.255	31.899	32.657	-0.19261					43	17	4	0	0	0	0.027866	1	2219	2219		83.287	33.263	1	527640	+		26946	37804	18574	18611	31038	31038					-0.0036872608798148576
ILTSKGVKPP	10	Unmodified	_ILTSKGVKPP_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3294677734375	2	520.329142	1038.64373	-0.37675	-0.00019603	1.2977	0.00067525	0.92099	0.00047922	520.3300203658873	69.687	0.79145	69.687	69.202	69.993	0					45	19	3	0	0	0	0.57825	1	8394	8394		79.451	0	1	8390300	+		26947	25924	18575	18612	31039	31039					0.12595479408150823
ILTSLRSSPSL	11	Unmodified	_ILTSLRSSPSL_					0	0	0		nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-4|C2CD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.3428955078125	2	587.34552	1172.67649	-0.81423	-0.00047823	-4.3071	-0.0025297	-5.1213	-0.003008	587.342874849692	88.768	1.0897	88.637	88.277	89.367	-0.13135					61	25	4	0	0	0	0.82076	1	10840	10840		56.434	1.7114	1	715880			26948	18486	18576	18613	31040	31040					0.09705641740333704
ILTSVNHR	8	Unmodified	_ILTSVNHR_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2729187011719	2	470.272158	938.529764	-0.81684	-0.00038414	1.3049	0.00061364	0.48803	0.00022951	470.2727082504141	91.182	1.3816	91.182	90.719	92.101	0					75	32	4	0	0	0	1.0574	1	11541	11541		26.796	2.2921	1	4597800			26949	4220	18577	18614	31041	31041					0.05804009365908769
ILTSVNHR	8	Unmodified	_ILTSVNHR_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2718811035156	2	470.272158	938.529764	0.016273	7.6529E-06	0.39545	0.00018597	0.41172	0.00019362	470.2722398350845	91.233	1.3697	91.221	90.785	92.155	-0.012383					81	32	4	0	0	0	0.97924	1	11505	11505		40.573	3.4135	1	4459900			26950	4220	18577	18614	31042	31042					0.05804009365908769
ILTSVNHR	8	Unmodified	_ILTSVNHR_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.27239990234375	2	470.272158	938.529764	-1.142	-0.00053707	1.1969	0.00056286	0.054838	2.5789E-05	470.27264567680317	91.314	1.5131	91.165	90.609	92.122	-0.1487					100	35	5	0	0	0	0.97924	1	11168	11168		40.573	0	1	5837400			26951	4220	18577	18614	31043	31043					0.05804009365908769
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3297729492188	2	567.32987	1132.64519	-0.38591	-0.00021894	0.27778	0.00015759	-0.10813	-6.1347E-05	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0075	1	11225	11225		35.152	8.1047	1	4298500			26952	2791	18578	18615	31044	31044					0.08417068706262398
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3297729492188	2	567.32987	1132.64519	-1.643	-0.00093215	1.1924	0.00067646	-0.4507	-0.00025569	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0292	1	11576	11576		30.318	0	1	14057000			26953	2791	18578	18615	31045	31045					0.08417068706262398
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3300170898438	2	567.32987	1132.64519	-0.4315	-0.0002448	-0.024713	-1.4021E-05	-0.45621	-0.00025882	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.0183	2	11404	11404;11595		32.751	1.2207	1	13648000			26954	2791	18578	18615	31046;31047	31046					0.08417068706262398
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.32958984375	2	567.32987	1132.64519	-0.48805	-0.00027688	0.030002	1.7021E-05	-0.45805	-0.00025986	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.0292	2	11512	11404;11512		30.318	7.2752	1	14972000			26955	2791	18578	18615	31048;31049	31049					0.08417068706262398
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.32958984375	2	567.32987	1132.64519	-0.57331	-0.00032526	0.55912	0.0003172	-0.014198	-8.0549E-06	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	0.9728	2	10916	10916;10927		42.864	5.0528	1	5699600			26956	2791	18578	18615	31050;31051	31050					0.08417068706262398
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3297119140625	2	567.32987	1132.64519	-0.10765	-6.1074E-05	-0.079636	-4.518E-05	-0.18729	-0.00010625	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	0.95664	2	10918	10895;10918		46.457	8.6453	1	5896300			26957	2791	18578	18615	31052;31053	31053					0.08417068706262398
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3301391601562	2	567.32987	1132.64519	0.22871	0.00012975	-0.73799	-0.00041868	-0.50928	-0.00028893	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.97926	3	11392	11305;11392;11422		41.427	13.544	1	18337000			26958	2791	18578	18615	31054;31055;31056	31055					0.08417068706262398
ILTTDYLVG	9	Unmodified	_ILTTDYLVG_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;CSMD3|p.T2652K|1|0.23|ENSG00000164796|chr8:112306123-112306123|G/T|missense_variant;CSMD3|p.R2653L|1|0.22|ENSG00000164796|chr8:112306120-112306120|C/A|missense_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;CSMD3|p.R2653L|1|0.22|ENSG00000164796|chr8:112306120-112306120|C/A|missense_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.7759094238281	2	497.776408	993.538263	0.48999	0.00024391	-3.272	-0.0016287	-2.782	-0.0013848	497.7747342576897	100.8	1.2787	100.67	100.4	101.68	-0.12576					63	32	3	0	0	0	0.40179	1	12508	12508		65.803	4.8312	1	770490			26959	593;594	18579	18616	31057	31057					0.04123518491860523
ILTTKTPKA	9	Unmodified	_ILTTKTPKA_					0	0	0		COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant;ENST00000479501.5_1_20:61926459-61943880:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2503967285156	2	486.808042	971.601532	-0.65253	-0.00031766	-1.0292	-0.00050105	-1.6818	-0.0008187	486.8075097405993	33.45	0.41241	33.45	33.213	33.626	0					21	11	2	0	0	0	0.024506	1	2405	2405		30.504	17.05	1	166710			26960	470	18580	18617	31058	31058					0.11459503999742537
ILTVPGFTD	9	Unmodified	_ILTVPGFTD_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2558288574219	2	481.7633	961.512048	-0.52752	-0.00025414	0.82176	0.00039589	0.29424	0.00014175	481.76326480697446	48.779	0.56355	48.678	48.544	49.107	-0.1008					24	14	3	0	0	0	0.024457	1	4856	4856		29.15	7.4472	1	555160	+		26961	22397	18581	18618	31059	31059					0.029752493203773156
ILVACLRLRP	10	Unmodified	_ILVACLRLRP_					0	0	0			REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	577.3666381835938	2	577.365536	1152.71652	-0.064667	-3.7336E-05	1.8354	0.0010597	1.7707	0.0010224	577.366523758484	101.17	0.81793	101.17	100.89	101.71	-0.0054474					51	18	4	0	0	0	1.1056	2	12883	12883;12896		31.955	0.46283	1	1373400	+		26962	34827	18582	18619	31060;31061	31060					0.14626909929870635
ILVACLRLRP	10	Unmodified	_ILVACLRLRP_					0	0	0			REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	REV__ENST00000545682.5_1_11:67232087-67232680:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3663330078125	2	577.365536	1152.71652	-0.040808	-2.3561E-05	1.8287	0.0010558	1.7879	0.0010323	577.3664534876788	101.22	0.73849	101.09	100.81	101.55	-0.12576					52	16	4	0	0	0	1.1166	1	12581	12581		30.504	3.8107	1	981470	+		26963	34827	18582	18619	31062	31062					0.14626909929870635
ILVADPFF	8	Unmodified	_ILVADPFF_					0	0	0			REV__ENSG00000100908|ENST00000216799|EMC9	REV__ENSG00000100908|ENST00000216799|EMC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.7319030761719	2	461.257654	920.500755	-0.23133	-0.0001067	1.0581	0.00048805	0.82675	0.00038135	461.25737209743687	25.076	0.47552	24.903	24.644	25.12	-0.1734					21	10	3	0	0	0	0.027866	1	1165	1165		29.842	6.8048	1	346820	+		26964	21163	18583	18620	31063	31063					0.03732472016895372
ILVADPFF	8	Unmodified	_ILVADPFF_					0	0	0			REV__ENSG00000100908|ENST00000216799|EMC9	REV__ENSG00000100908|ENST00000216799|EMC9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	461.257654	920.500755	-0.54452	-0.00025116	0.93114	0.00042949	0.38662	0.00017833	461.25754456085565	25.366	0.54458	25.139	24.931	25.476	-0.22683	0.14261	0.00020165	NaN	29.842	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353030	+		26965	21163	18583	18620							0.03732472016895372
ILVAFFLLI	9	Unmodified	_ILVAFFLLI_					0	0	0		ENST00000587942.1_1_18:59774719-59777227:-|nuORF;ENSG00000197563|ENST00000640252|PIGN	ENST00000587942.1_1_18:59774719-59777227:-|nuORF	ENST00000587942.1_1_18:59774719-59777227:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.8279418945312	2	524.843897	1047.67324	1.1796	0.00061909	1.1486	0.00060281	2.3281	0.0012219	524.8444798781719	98.093	0.18784	97.968	97.882	98.069	-0.12413					6	4	2	0	0	0	0.024475	1	12144	12144		29.842	0	1	47836			26966	10016	18584	18621	31064	31064					0.15131043424275958
ILVAIVTNVC	10	Unmodified	_ILVAIVTNVC_					0	0	0			REV__nc|ENSG00000065000|O14617-4|AP3D1	REV__nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.8118286132812	2	522.809728	1043.6049	0.70596	0.00036908	2.205	0.0011528	2.911	0.0015219	522.8110740527467	95.321	1.3397	95.199	94.727	96.067	-0.12251					81	30	4	0	0	0	1.089	1	11766	11766		34.173	0	1	788330	+		26967	20298	18585	18622	31065	31065					0.0848443078211858
ILVAKQSCL	9	Unmodified	_ILVAKQSCL_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.79052734375	2	487.788795	973.563038	0.56547	0.00027583	3.1477	0.0015354	3.7132	0.0018113	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.72875	1	10131	10131		44.117	0	1	2408700	+		26968	24260	18586	18623	31066	31066					0.0751987509358969
ILVAMQVVE	9	Unmodified	_ILVAMQVVE_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2908630371094	2	501.288628	1000.5627	-0.38964	-0.00019532	3.5736	0.0017914	3.184	0.0015961	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.72875	1	10689	10689		44.117	0	1	8504000	+		26969	19927	18587	18624	31067	31067					0.06244455373735036
ILVAVIVL	8	Unmodified	_ILVAVIVL_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	420.301865	838.589176	2.1441	0.00090119	-0.49142	-0.00020654	1.6527	0.00069464	420.30114876281766	23.786	0.26307	23.595	23.442	23.705	-0.19117					7	5	2	0	0	0	0.027866	1	951	951		24.504	0	1	12145	+		26970	22130	18588	18625	31068	31068					0.16342512327355507
ILVAVPESLP	10	Unmodified	_ILVAVPESLP_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A;nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7504272460938	2	519.3157	1036.61685	-0.6344	-0.00032946	-2.1364	-0.0011094	-2.7708	-0.0014389	519.3145474276852	23.507	0.51526	23.584	23.351	23.866	0.076241					27	11	3	0	0	0	0.03519	1	926	926		10.265	0	1	222560			26971	6555	18589	18626	31069	31069					0.10000370796956304
ILVDDSARLV	10	Unmodified	_ILVDDSARLV_					0	0	0			REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.8211059570312	2	550.819138	1099.62372	0.31899	0.00017571	3.1108	0.0017135	3.4298	0.0018892	550.8207791101496	101.7	1.8078	101.56	100.86	102.66	-0.13156					100	41	4	0	0	0	0.31896	1	12633	12633		107.01	2.9939	1	1315100	+		26972	30857	18590	18627	31070	31070					0.07789683677492576
ILVDDSARLV	10	Unmodified	_ILVDDSARLV_					0	0	0			REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.819138	1099.62372	-0.52664	-0.00029008	3.7334	0.0020564	3.2068	0.0017663	550.8212326661077	101.78	1.2502	101.78	101.21	102.46	0.0073471	0.080638	0.00057047	NaN	107.01	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468930	+		26973	30857	18590	18627							0.07789683677492576
ILVDDSARLV	10	Unmodified	_ILVDDSARLV_					0	0	0			REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.819138	1099.62372	-0.11818	-6.5096E-05	3.2344	0.0017815	3.1162	0.0017165	550.8210007321218	101.85	1.3626	101.85	101.31	102.68	-0.0054474	0.14455	2.071E-05	NaN	107.01	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487820	+		26974	30857	18590	18627							0.07789683677492576
ILVDDSARLV	10	Unmodified	_ILVDDSARLV_					0	0	0			REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	REV__ENST00000358402.8_1_14:65542277-65542478:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	550.819138	1099.62372	0.11238	6.1899E-05	3.2042	0.0017649	3.3166	0.0018268	550.8208481024678	101.83	1.2564	101.66	101.38	102.64	-0.17178	-0.042713	-1.2502E-05	NaN	107.01	71	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	814900	+		26975	30857	18590	18627							0.07789683677492576
ILVDGLTLS	9	Unmodified	_ILVDGLTLS_					0	0	0			REV__ENSG00000105928|ENST00000645220|GSDME	REV__ENSG00000105928|ENST00000645220|GSDME	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.777099609375	2	465.778951	929.543348	-0.52618	-0.00024508	-2.5328	-0.0011797	-3.059	-0.0014248	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.83071	1	9747	9747		37.159	1.9584	1	1029300	+		26976	21575	18591	18628	31071	31071					0.07575822354476713
ILVDQQVW	8	Unmodified	_ILVDQQVW_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.75830078125	2	500.776742	999.538931	0.095736	4.7942E-05	4.3889	0.0021979	4.4846	0.0022458	500.77827307717286	69.296	1.5642	69.053	68.587	70.151	-0.24278					94	37	4	0	0	0	0.027866	1	8152	8152		101.21	32.425	1	511740			26977	3673	18592	18629	31072	31072					0.03914357931569157
ILVDTVWAL	9	Unmodified	_ILVDTVWAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3028564453125	2	515.302593	1028.59063	0.22091	0.00011384	2.2552	0.0011621	2.4761	0.0012759	515.3035977068083	96.171	1.1037	96.034	95.331	96.435	-0.1367					61	25	4	0	0	0	0.10076	2	11872	11860;11872		110.34	39.042	1	475220			26978	9548	18593	18630	31073;31074	31074					0.07748101625475101
ILVDTVWAL	9	Unmodified	_ILVDTVWAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3042602539062	2	515.302593	1028.59063	0.79461	0.00040947	-0.53251	-0.0002744	0.26211	0.00013506	515.3022666718826	96.166	1.1986	96.043	95.597	96.796	-0.12305					57	27	3	0	0	0	0.074956	2	11874	11874;11886		119.56	51.072	1	494060			26979	9548	18593	18630	31075;31076	31075					0.07748101625475101
ILVDTVWAL	9	Unmodified	_ILVDTVWAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.3038330078125	2	515.302593	1028.59063	-0.23449	-0.00012083	-0.8689	-0.00044774	-1.1034	-0.00056858	515.3020395032875	96.202	1.2007	96.045	95.532	96.733	-0.15646					49	27	3	0	0	0	0.08613	2	11878	11865;11878		115.46	49.994	1	510710			26980	9548	18593	18630	31077;31078	31078					0.07748101625475101
ILVDWLVEV	9	Unmodified	_ILVDWLVEV_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;ENSG00000133101|ENST00000255465|CCNA1;ENSG00000145386|ENST00000274026|CCNA2;nc|ENSG00000133101|P78396-2|CCNA1;nc|ENSG00000133101|P78396|CCNA1	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.3165893554688	2	543.3157	1084.61685	-0.022873	-1.2427E-05	0.56019	0.00030436	0.53732	0.00029193	543.3159977202943	103.37	0.86647	103.24	102.83	103.69	-0.12724					35	20	3	0	0	0	0.59099	1	12864	12864		53.351	12.573	1	202730			26981	5929	18594	18631	31079	31079					0.07792370796937576
ILVDWLVQV	9	Unmodified	_ILVDWLVQV_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8245239257812	2	542.823692	1083.63283	-0.74023	-0.00040182	0.32972	0.00017898	-0.41051	-0.00022284	542.8238511099046	101.8	1.1468	101.8	101.51	102.65	0					66	25	4	0	0	0	0.021872	1	13038	13038		148.04	37.923	1	2605200			26982	6599	18595	18632	31080	31080					0.09436077033842594
ILVDWLVQV	9	Unmodified	_ILVDWLVQV_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8250122070312	2	542.823692	1083.63283	-0.71037	-0.0003856	0.22097	0.00011995	-0.48939	-0.00026565	542.823786903325	101.75	1.1583	101.76	101.47	102.63	0.0073471					63	26	4	0	0	0	0.03849	1	12991	12991		134.81	47.114	1	2352300			26983	6599	18595	18632	31081	31081					0.09436077033842594
ILVDWLVQV	9	Unmodified	_ILVDWLVQV_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8236083984375	2	542.823692	1083.63283	0.10581	5.7437E-05	-0.42579	-0.00023113	-0.31998	-0.00017369	542.8234352971284	101.74	1.4688	101.61	101.31	102.78	-0.13156					94	34	4	0	0	0	0.013333	5	12617	12617;12628;12639;12651;12699		191.63	56.815	1	4002000			26984	6599	18595	18632	31082;31083;31084;31085;31086	31082					0.09436077033842594
ILVDWLVQV	9	Unmodified	_ILVDWLVQV_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.8239135742188	2	542.823692	1083.63283	-0.00079048	-4.2909E-07	-0.40492	-0.0002198	-0.40571	-0.00022023	542.8234807238183	101.74	1.5633	101.61	101.19	102.76	-0.12576					100	37	4	0	0	0	0.014988	4	12636	12636;12647;12659;12670		195.81	64.783	1	4212900			26985	6599	18595	18632	31087;31088;31089;31090	31087					0.09436077033842594
ILVDWLVQV	9	Unmodified	_ILVDWLVQV_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.82373046875	2	542.823692	1083.63283	-0.51673	-0.00028049	0.031069	1.6865E-05	-0.48566	-0.00026363	542.8236844819108	101.8	1.5614	101.63	101.24	102.8	-0.17178					99	36	5	0	0	0	0.013333	4	12616	12616;12628;12640;12652		191.63	56.815	1	4213200			26986	6599	18595	18632	31091;31092;31093;31094	31091					0.09436077033842594
ILVEGISTV	9	Unmodified	_ILVEGISTV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.777587890625	2	465.778951	929.543348	0.3767	0.00017546	-3.2562	-0.0015167	-2.8795	-0.0013412	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.67308	1	9729	9729		47.916	9.1095	1	1283800			26987	1054	18596	18633	31095	31095					0.07575822354465345
ILVEKVEYGE	10	Unmodified	_ILVEKVEYGE_					0	0	0		ENST00000317012.4_1_3:111313844-111314278:-|nuORF	ENST00000317012.4_1_3:111313844-111314278:-|nuORF	ENST00000317012.4_1_3:111313844-111314278:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.8192138671875	2	589.818804	1177.62306	-0.90796	-0.00053553	2.7938	0.0016478	1.8858	0.0011123	589.8202601296089	69.895	0.91073	69.628	69.287	70.198	-0.26724					60	19	4	0	0	0	0.44975	2	8122	8104;8122		93.598	27.168	1	2042900			26988	12154	18597	18634	31096;31097	31097					0.04134844237796642
ILVEKVEYGE	10	Unmodified	_ILVEKVEYGE_					0	0	0		ENST00000317012.4_1_3:111313844-111314278:-|nuORF	ENST00000317012.4_1_3:111313844-111314278:-|nuORF	ENST00000317012.4_1_3:111313844-111314278:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.81884765625	2	589.818804	1177.62306	-0.73024	-0.00043071	2.5516	0.001505	1.8213	0.0010743	589.820124649595	69.817	0.90707	69.566	69.236	70.143	-0.25063					59	21	4	0	0	0	0.44975	2	8123	8110;8123		93.598	19.343	1	2480700			26989	12154	18597	18634	31098;31099	31099					0.04134844237796642
ILVEKVEYGE	10	Unmodified	_ILVEKVEYGE_					0	0	0		ENST00000317012.4_1_3:111313844-111314278:-|nuORF	ENST00000317012.4_1_3:111313844-111314278:-|nuORF	ENST00000317012.4_1_3:111313844-111314278:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.8195190429688	2	589.818804	1177.62306	-0.61035	-0.00036	2.3729	0.0013996	1.7626	0.0010396	589.8199842203446	69.797	0.89934	69.575	69.266	70.165	-0.22245					63	20	4	0	0	0	0.40114	1	8093	8093		98.582	21.808	1	2633300			26990	12154	18597	18634	31100	31100					0.04134844237796642
ILVELRTM	8	Unmodified	_ILVELRTM_					0	0	0		ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7906188964844	2	487.788795	973.563038	0.37956	0.00018514	3.3532	0.0016356	3.7327	0.0018208	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.97924	1	10211	10211		40.573	3.5441	1	2659000			26991	15153	18598	18635	31101	31101					0.07519875093601058
ILVELRTM	8	Unmodified	_ILVELRTM_					0	0	0		ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7904052734375	2	487.788795	973.563038	0.56547	0.00027583	3.1477	0.0015354	3.7132	0.0018113	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.91239	2	10193	9999;10193		50.025	5.4935	1	2408700			26992	15153	18598	18635	31102;31103	31103					0.07519875093601058
ILVELRTM	8	Unmodified	_ILVELRTM_					0	0	0		ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	ENST00000478660.6_1_6:45481365-45631456:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7911071777344	2	487.788795	973.563038	0.33726	0.00016451	3.3292	0.001624	3.6665	0.0017885	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0239	1	10153	10153		33.516	0.022601	1	1999500			26993	15153	18598	18635	31104	31104					0.07519875093601058
ILVETLFVS	9	Unmodified	_ILVETLFVS_					0	0	0			REV__ENST00000378625.5_1_1:1696850-1711491:-|nuORF	REV__ENST00000378625.5_1_1:1696850-1711491:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2814636230469	2	510.802426	1019.5903	0.53271	0.00027211	-1.8443	-0.00094209	-1.3116	-0.00066999	510.8020421653538	95.829	0.30109	95.706	95.598	95.899	-0.12251					10	6	2	0	0	0	0.024354	1	11850	11850		38.806	14.603	1	40717	+		26994	31413	18599	18636	31105	31105					0.08128681905623125
ILVFDALIY	9	Unmodified	_ILVFDALIY_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.81396484375	2	533.812793	1065.61103	-0.27117	-0.00014476	0.33783	0.00018034	0.066655	3.5581E-05	533.812758900687	104.03	0.82424	104.02	103.77	104.6	-0.0032196					50	19	4	0	0	0	0.4855	1	13259	13259		60.294	2.4827	1	503330			26995	4804	18600	18637	31106	31106					0.08085272285279643
ILVFHHMAQ	9	Unmodified	_ILVFHHMAQ_					0	0	0		ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.2533569335938	2	548.292037	1094.56952	-0.34166	-0.00018733	-0.94878	-0.00052021	-1.2904	-0.00070753	548.2914971029113	52.386	0.69477	52.239	51.95	52.645	-0.14732					32	17	3	0	0	0	0.024293	1	5570	5570		42.474	0	1	833970			26996	6339	18601	18638	31107	31107					0.026018130449529053
ILVFYLPSD	9	Unmodified	_ILVFYLPSD_					0	0	0		ENSG00000117971|ENST00000261751|CHRNB4;ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000117971|ENST00000261751|CHRNB4;ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.340087890625	2	533.794601	1065.57465	0.21444	0.00011446	1.064	0.00056797	1.2785	0.00068244	533.7954922729292	98.471	0.8401	98.469	97.973	98.813	-0.0020752					42	19	3	0	0	0	0.024412	1	12449	12449		50.025	25.822	1	277490			26997	6835;3664	18602	18639	31108	31108					0.044483953885674055
ILVGNKSDLA	10	Unmodified	_ILVGNKSDLA_					0	0	0		ENSG00000139890|ENST00000267396|REM2	ENSG00000139890|ENST00000267396|REM2	ENSG00000139890|ENST00000267396|REM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.8009643554688	2	515.300581	1028.58661	-0.31199	-0.00016077	-1.4668	-0.00075582	-1.7787	-0.00091659	515.2997956498652	62.472	0.56457	62.251	61.925	62.489	-0.22097					37	15	4	0	0	0	0.94316	1	7051	7051		51.193	5.2204	1	5646100			26998	5374	18603	18640	31109	31109					0.07346012131779389
ILVILEEE	8	Unmodified	_ILVILEEE_					0	0	0			REV__ENST00000433671.2_1_1:39325692-39325881:+|nuORF	REV__ENST00000433671.2_1_1:39325692-39325881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2811279296875	2	479.278783	956.543014	0.70366	0.00033725	-2.352	-0.0011273	-1.6484	-0.00079003	479.27737502520233	96.231	2.3544	96.108	95.378	97.732	-0.12305					131	53	5	0	0	0	1.0574	1	11880	11880		26.796	0	1	1695100	+		26999	32410	18604	18641	31110	31110					0.0630040263462206
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7747802734375	2	436.776211	871.537869	-0.42442	-0.00018538	-2.8951	-0.0012645	-3.3196	-0.0014499	436.77487826052743	90.03	2.3328	90.03	89.44	91.772	0					165	55	5	0	0	0	1.0239	2	11339	11339;11409		33.516	8.0654	1	38190000	+		27000	26903	18605	18642	31111;31112	31111					0.0969614356265538
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.7747802734375	2	436.776211	871.537869	0.53541	0.00023385	-3.9142	-0.0017096	-3.3788	-0.0014758	436.77442646981	90.011	2.1118	90.025	89.55	91.662	0.013443					149	50	5	0	0	0	0.96719	3	11314	11269;11290;11314		42.474	12.633	1	34213000	+		27001	26903	18605	18642	31113;31114;31115	31115					0.0969614356265538
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.77490234375	2	436.776211	871.537869	-0.98134	-0.00042863	-2.2927	-0.0010014	-3.2741	-0.00143	436.7751362763108	90.163	2.4309	90.008	89.479	91.91	-0.1552					175	57	5	0	0	0	1.0239	4	11000	11000;11024;11048;11085		33.516	8.0654	1	32770000	+		27002	26903	18605	18642	31116;31117;31118;31119	31116					0.0969614356265538
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7745361328125	2	436.776211	871.537869	0.68058	0.00029726	-3.9115	-0.0017084	-3.2309	-0.0014112	436.77442546630624	90.156	2.1751	90.018	89.532	91.707	-0.13824					144	51	5	0	0	0	1.0239	3	11010	10989;11010;11034		33.516	5.2613	1	20832000	+		27003	26903	18605	18642	31120;31121;31122	31121					0.0969614356265538
ILVKFIDVGGY	11	Unmodified	_ILVKFIDVGGY_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.798583984375	2	612.355357	1222.69616	-1.653	-0.0010122	1.1032	0.00067555	-0.54976	-0.00033665	612.356149936136	58.97	0.3941	58.782	58.584	58.979	-0.18795					13	9	2	0	0	0	0.024749	1	6473	6473		32.812	7.2384	1	127850			27004	10355	18606	18643	31123	31123					0.09372017751093153
ILVKIRPHI	9	Unmodified	_ILVKIRPHI_					0	0	0		nc|ENSG00000185013|Q96P26-3|NT5C1B;ENSG00000185013|ENST00000304081|NT5C1B;nc|ENSG00000185013|Q96P26-4|NT5C1B;nc|ENSG00000185013|Q96P26|NT5C1B	nc|ENSG00000185013|Q96P26-3|NT5C1B	nc|ENSG00000185013|Q96P26-3|NT5C1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.800537109375	2	544.868769	1087.72298	-0.27416	-0.00014938	-2.1792	-0.0011874	-2.4533	-0.0013367	545.3698106738663	45.411	0.20348	45.158	45.019	45.223	-0.25252					8	5	2	0	0	0	0.024541	1	4269	4269		19.36	7.1531	1	52268			27005	9397	18607	18644	31124	31124					0.18263171152921132
ILVKRPDV	8	Unmodified	_ILVKRPDV_					0	0	0			REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.7689514160156	2	470.302927	938.591301	-0.93632	-0.00044035	0.99349	0.00046724	0.05717	2.6887E-05	470.30321357558415	65.135	0.55576	64.873	64.65	65.205	-0.2626					30	14	3	0	0	0	0.027866	1	7670	7670		27.882	4.8398	1	221980	+		27006	23670	18608	18645	31125	31125					0.11954941065175717
ILVKVELQN	9	Unmodified	_ILVKVELQN_					0	0	0			REV__ENST00000462710.5_1_1:24969817-24973316:+|nuORF	REV__ENST00000462710.5_1_1:24969817-24973316:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3255615234375	2	528.326599	1054.63865	0.61662	0.00032578	-0.96051	-0.00050746	-0.34388	-0.00018168	528.3258664808285	72.179	1.5277	72.189	71.69	73.217	0.0097656					84	38	4	0	0	0	0.12602	1	8694	8694		104.75	6.1172	1	2411300	+		27007	32909	18609	18646	31126	31126					0.11351175545541992
ILVLIGPRV	9	Unmodified	_ILVLIGPRV_					0	0	0			REV__ENST00000470840.5_1_9:131140285-131152010:+|nuORF	REV__ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.3365478515625	2	490.33677	978.658987	-0.76518	-0.0003752	0.60352	0.00029593	-0.16166	-7.9269E-05	490.33693800440835	81.489	3.0366	81.513	81.167	84.203	0.023911					163	71	3	0	0	0	0.60698	1	10057	10057		52.299	4.3836	1	6141800	+		27008	26109	18610	18647	31127	31127					0.16880390995993366
ILVMFYYL	8	Unmodified	_ILVMFYYL_					0	0	0		ENSG00000066185|ENST00000372565|ZMYND12;ENST00000475426.1_1_1:42898780-42901095:-|nuORF	ENSG00000066185|ENST00000372565|ZMYND12	ENSG00000066185|ENST00000372565|ZMYND12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8025512695312	2	531.29064	1060.56673	-0.29406	-0.00015623	0.34318	0.00018233	0.04912	2.6097E-05	531.2911272500163	79.39	0.1207	79.409	79.314	79.434	0.018677					4	2	2	0	0	0	0.027866	1	9764	9764		43.626	0	1	50439			27009	1334	18611	18648	31128	31128					0.03886544867441444
ILVMKELKN	9	Unmodified	_ILVMKELKN_					0	0	0		PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.328369140625	2	544.330827	1086.6471	-0.022079	-1.2018E-05	-4.0046	-0.0021798	-4.0267	-0.0021918	544.3286030082942	72.341	1.4995	72.06	71.731	73.231	-0.28124					103	37	5	0	0	0	0.03849	1	8785	8785		134.81	8.9967	1	16396000			27010	8977	18612	18649	31129	31129					0.10724406190502123
ILVMKELKN	9	Unmodified	_ILVMKELKN_					0	0	0		PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant;ENSG00000180370|ENST00000327134|PAK2	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	PAK2|p.S330Hfs*6|1|0.31|ENSG00000180370|chr3:196814497-196814497|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.3280639648438	2	544.330827	1086.6471	-0.20925	-0.0001139	-3.8764	-0.0021101	-4.0857	-0.002224	544.3286761180352	72.038	1.637	72.048	71.728	73.365	0.0097733					111	41	5	0	0	0	0.033448	1	8702	8702		138.83	13.011	1	18674000			27011	8977	18612	18649	31130	31130					0.10724406190502123
ILVMLLGPL	9	Unmodified	_ILVMLLGPL_					0	0	0		ENSG00000255374|ENST00000531678|TAS2R43;ENSG00000256436|ENST00000390675|TAS2R31;TAS2R43|p.N161Wfs*5|1|0.04|ENSG00000255374|chr12:11091749-11091750|-/ATGTGCCA|frameshift_variant	ENSG00000255374|ENST00000531678|TAS2R43	ENSG00000255374|ENST00000531678|TAS2R43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.30035400390625	2	484.814282	967.614011	-0.12684	-6.1492E-05	-3.989	-0.0019339	-4.1158	-0.0019954	484.8120121019259	60.248	0.19171	60	59.945	60.137	-0.24842					6	4	2	0	0	0	0.024475	1	6695	6695		29.842	8.1392	1	160930			27012	10892	18613	18650	31131	31131					0.12890824138446533
ILVPAADRA	9	Unmodified	_ILVPAADRA_					0	0	0		nc|ENSG00000056291|Q9Y5X5|NPFFR2;nc|ENSG00000056291|Q9Y5X5-4|NPFFR2	nc|ENSG00000056291|Q9Y5X5|NPFFR2	nc|ENSG00000056291|Q9Y5X5|NPFFR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7612609863281	2	463.276909	924.539266	-0.17412	-8.0668E-05	0.801	0.00037109	0.62688	0.00029042	463.2769457388516	49.078	0.30584	48.896	48.809	49.115	-0.18206					9	7	2	0	0	0	0.024405	1	4893	4893		20.947	0	1	40473			27013	18050	18614	18651	31132	31132					0.07397777651408433
ILVPCVKTEV	10	Unmodified	_ILVPCVKTEV_					0	0	0			REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	MSMS	OPSCC_39_ClassI_Rep-1	1	550.8209228515625	2	550.822835	1099.63112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.77	1	101.77	101.27	102.27	0								0	0	0	0.25093	1	13034	13034		79.713	1.4488	1		+		27014	24977	18615	18652	31133	31133					0.08528699953581054
ILVPGAGLGRL	11	Unmodified	_ILVPGAGLGRL_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3397216796875	2	533.342584	1064.67061	-0.51819	-0.00027637	-3.9938	-0.0021301	-4.512	-0.0024065	533.3403481687069	97.908	0.97088	97.908	97.549	98.52	0					61	22	4	0	0	0	1.0054	1	12507	12507		35.618	1.4457	1	1189600			27015	6506	18616	18653	31134	31134					0.14086588019335977
ILVQPVGKN	9	Unmodified	_ILVQPVGKN_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.26617431640625	2	484.300384	966.586216	-0.27444	-0.00013291	1.1364	0.00055035	0.86195	0.00041744	484.30026810574793	57.144	0.73384	57.144	56.571	57.305	0					28	20	2	0	0	0	0.024294	1	6419	6419		37.159	0	1	270960	+		27016	28706	18617	18654	31135	31135					0.10158637202573573
ILVQVIPVV	9	Unmodified	_ILVQVIPVV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.3310852050781	2	490.331153	978.647754	-0.9061	-0.00044429	1.1211	0.00054969	0.21495	0.0001054	490.33159676512014	90.286	0.83365	90.286	90.054	90.887	0					50	19	4	0	0	0	0.52323	2	11417	11417;11428		57.811	23.549	1	1086700			27017	3643	18618	18655	31136;31137	31136					0.15757568901858576
ILVQVIPVV	9	Unmodified	_ILVQVIPVV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.33123779296875	2	490.331153	978.647754	-0.029994	-1.4707E-05	0.25307	0.00012409	0.22308	0.00010938	490.3312048589056	90.352	0.94887	90.335	89.999	90.948	-0.016716					61	22	5	0	0	0	0.31247	2	11401	11388;11401		73.975	31.579	1	1310700			27018	3643	18618	18655	31138;31139	31139					0.15757568901858576
ILVQVIPVV	9	Unmodified	_ILVQVIPVV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.33123779296875	2	490.331153	978.647754	-0.0016712	-8.1943E-07	0.15556	7.6277E-05	0.15389	7.5458E-05	490.33110359814975	90.371	0.95063	90.385	90.043	90.993	0.013443					62	22	4	0	0	0	0.10076	2	11352	11340;11352		110.34	47.031	1	1699700			27019	3643	18618	18655	31140;31141	31141					0.15757568901858576
ILVQVIPVV	9	Unmodified	_ILVQVIPVV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.331153	978.647754	-1.3745	-0.00067397	2.0026	0.00098192	0.62805	0.00030795	490.332025106759	90.243	0.73657	90.088	89.781	90.517	-0.1552	-0.13282	0.0012634	NaN	110.34	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289740			27020	3643	18618	18655							0.15757568901858576
ILVQVIPVV	9	Unmodified	_ILVQVIPVV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.331153	978.647754	-0.49002	-0.00024027	0.98548	0.00048321	0.49547	0.00024294	490.3315013780712	90.222	0.78159	90.097	89.805	90.587	-0.12512	-0.1242	0.00026596	NaN	110.34	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343230			27021	3643	18618	18655							0.15757568901858576
ILVQVIPVV	9	Unmodified	_ILVQVIPVV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.331153	978.647754	0.48781	0.00023919	0.0071596	3.5106E-06	0.49497	0.0002427	490.33106540620986	90.274	0.82787	90.136	89.877	90.704	-0.13824	-0.085117	-0.00069344	NaN	110.34	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472360			27022	3643	18618	18655							0.15757568901858576
ILVRLKSLNW	10	Unmodified	_ILVRLKSLNW_					0	0	0			REV__SLITRK3|p.R170W|1|0.08|ENSG00000121871|chr3:165190323-165190323|G/A|missense_variant	REV__SLITRK3|p.R170W|1|0.08|ENSG00000121871|chr3:165190323-165190323|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3922119140625	2	621.390065	1240.76558	0.47212	0.00029337	4.2059	0.0026135	4.678	0.0029069	621.3926288383752	103.41	0.93773	103.28	103.02	103.96	-0.12723					48	21	4	0	0	0	1.0665	1	12851	12851		37.159	6.8414	1	622120	+		27023	37512	18619	18656	31142	31142					0.1548252149052587
ILVRNIKTY	9	Unmodified	_ILVRNIKTY_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000554165.1_1_14:91850766-91884010:-|nuORF;ENST00000553437.1_1_14:91808648-91875041:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.34912109375	2	560.347866	1118.68118	-0.034242	-1.9187E-05	2.7243	0.0015265	2.69	0.0015073	560.3494057075354	106.07	0.48589	106.07	105.81	106.3	0.00014496					46	18	3	0	0	0	0.67687	1	13531	13531		47.657	6.8792	1	450830			27024	928	18620	18657	31143	31143					0.1265857067376146
ILVRSGHN	8	Unmodified	_ILVRSGHN_					0	0	0		ENSG00000175634|ENST00000312629|RPS6KB2;ENST00000526268.5_1_11:67200292-67200735:+|nuORF	ENSG00000175634|ENST00000312629|RPS6KB2	ENSG00000175634|ENST00000312629|RPS6KB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2588195800781	2	448.259051	894.503549	0.41659	0.00018674	-0.5403	-0.00024219	-0.12371	-5.5455E-05	448.25867764123615	89.029	1.3807	89.029	88.555	89.936	0					85	32	4	0	0	0	0.94517	1	11235	11235		45.952	8.9235	1	7392500			27025	8578	18621	18658	31144	31144					0.05207740194430244
ILVSGKTK	8	Unmodified	_ILVSGKTK_					0	0	0		ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.2748107910156	2	423.276378	844.538203	0.365	0.0001545	-3.6358	-0.0015389	-3.2708	-0.0013844	423.27473569730836	87.824	1.1914	87.789	87.405	88.596	-0.035355					72	28	4	0	0	0	1.0574	1	11019	11019		18.324	0.95945	1	3163800			27026	3911	18622	18659	31145	31145					0.10971563282510033
ILVSPLVYL	9	Unmodified	_ILVSPLVYL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.82244873046875	2	508.823161	1015.63177	0.14097	7.1729E-05	-0.22621	-0.0001151	-0.085237	-4.3371E-05	508.8228394644372	99.605	0.64227	99.605	99.268	99.91	0					42	14	4	0	0	0	0.4855	1	12750	12750		60.294	7.9948	1	380040			27027	7843	18623	18660	31146	31146					0.12457862664939512
ILVSPLVYL	9	Unmodified	_ILVSPLVYL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.8228759765625	2	508.823161	1015.63177	-0.041498	-2.1115E-05	0.2935	0.00014934	0.252	0.00012823	508.8231513310605	99.545	0.68658	99.555	99.223	99.91	0.010231					36	15	3	0	0	0	0.20304	2	12702	12702;12715		88.643	20.158	1	369010			27028	7843	18623	18660	31147;31148	31147					0.12457862664939512
ILVSPLVYL	9	Unmodified	_ILVSPLVYL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.82330322265625	2	508.823161	1015.63177	0.22141	0.00011266	-0.14182	-7.2162E-05	0.079594	4.0499E-05	508.82290577354166	99.647	0.59586	99.642	99.343	99.939	-0.0050888					33	13	3	0	0	0	0.20304	2	12666	12666;12679		88.643	20.158	1	428690			27029	7843	18623	18660	31149;31150	31149					0.12457862664939512
ILVSPLVYL	9	Unmodified	_ILVSPLVYL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8236999511719	2	508.823161	1015.63177	0.64239	0.00032687	-0.89206	-0.0004539	-0.24966	-0.00012703	508.82255066740515	99.464	0.46395	99.328	99.129	99.593	-0.13526					28	11	4	0	0	0	0.78069	2	12318	12318;12343		40.573	7.057	1	118430			27030	7843	18623	18660	31151;31152	31151					0.12457862664939512
ILVSPLVYL	9	Unmodified	_ILVSPLVYL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.82269287109375	2	508.823161	1015.63177	0.74627	0.00037972	-0.63835	-0.00032481	0.10792	5.4911E-05	508.82264791099703	99.469	0.52983	99.344	99.111	99.641	-0.12458					29	14	3	0	0	0	0.90698	1	12336	12336		31.955	5.1588	1	128640			27031	7843	18623	18660	31153	31153					0.12457862664939512
ILVSPLVYL	9	Unmodified	_ILVSPLVYL_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.8234558105469	2	508.823161	1015.63177	-0.12349	-6.2836E-05	-0.24622	-0.00012528	-0.36971	-0.00018812	508.8229213328234	99.541	0.51899	99.372	99.118	99.637	-0.16862					22	12	2	0	0	0	0.90698	1	12333	12333		31.955	0	1	138480			27032	7843	18623	18660	31154	31154					0.12457862664939512
ILVSYTSI	8	Unmodified	_ILVSYTSI_					0	0	0		OR10A7|p.R220S|1|0.42|ENSG00000179919|chr12:55221682-55221682|C/A|missense_variant	OR10A7|p.R220S|1|0.42|ENSG00000179919|chr12:55221682-55221682|C/A|missense_variant	OR10A7|p.R220S|1|0.42|ENSG00000179919|chr12:55221682-55221682|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2577209472656	2	448.260394	894.506234	0.20384	9.1374E-05	-2.8827	-0.0012922	-2.6789	-0.0012008	448.259032001162	86.408	0.73396	86.363	86.033	86.767	-0.045097					31	16	3	0	0	0	0.96719	1	10837	10837		42.474	7.2737	1	482970			27033	18905	18624	18661	31155	31155					0.05476150808715374
ILVTIKQGF	9	Unmodified	_ILVTIKQGF_					0	0	0			REV__nc|ENSG00000102125|Q16635-7|TAFAZZIN	REV__nc|ENSG00000102125|Q16635-7|TAFAZZIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2894592285156	2	509.81841	1017.62227	-0.93341	-0.00047587	3.463	0.0017655	2.5296	0.0012896	509.8198891065403	48.243	0.37764	47.967	47.738	48.116	-0.27598					15	9	2	0	0	0	0.024487	1	4723	4723		11.511	0	1	104660	+		27034	21290	18625	18662	31156	31156					0.11416094379421793
ILVVVLCCI	9	Unmodified	_ILVVVLCCI_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7915954589844	2	487.792492	973.570431	0.37955	0.00018514	-4.2254	-0.0020611	-3.8459	-0.001876	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.80342	1	10172	10172		39.021	1.21	1	2659000			27035	7254	18626	18663	31157	31157					0.08258891369644061
ILVVVLCCI	9	Unmodified	_ILVVVLCCI_					0	0	0		nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7909851074219	2	487.792492	973.570431	0.34339	0.0001675	-3.3393	-0.0016289	-2.9959	-0.0014614	487.79092235400344	96.371	1.7522	96.235	95.853	97.605	-0.1367					89	39	4	0	0	0	0.80342	1	11905	11905		39.021	9.18	1	805910			27036	7254	18626	18663	31158	31158					0.08258891369644061
ILVWLTLPL	9	Unmodified	_ILVWLTLPL_					0	0	0			REV__ENSG00000115604|ENST00000233957|IL18R1	REV__ENSG00000115604|ENST00000233957|IL18R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7953491210938	2	534.346803	1066.67905	-0.12701	-6.7867E-05	-4.2447	-0.0022682	-4.3717	-0.002336	534.344380694315	91.067	0.66152	91.078	90.825	91.487	0.011276					24	15	2	0	0	0	0.024517	1	11501	11501		26.796	0	1	256650	+		27037	22219	18627	18664	31159	31159					0.1483814193593389
ILVWMVTI	8	Unmodified	_ILVWMVTI_					0	0	0		ENSG00000188467|ENST00000341459|SLC24A5;nc|ENSG00000188467|Q71RS6-2|SLC24A5	ENSG00000188467|ENST00000341459|SLC24A5	ENSG00000188467|ENST00000341459|SLC24A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79052734375	2	487.790807	973.56706	0.29152	0.0001422	-0.7053	-0.00034404	-0.41379	-0.00020184	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.94001	1	10501	10501		46.766	6.1938	1	2091900			27038	9721	18628	18665	31160	31160					0.07921964587308139
ILVWMVTI	8	Unmodified	_ILVWMVTI_					0	0	0		ENSG00000188467|ENST00000341459|SLC24A5;nc|ENSG00000188467|Q71RS6-2|SLC24A5	ENSG00000188467|ENST00000341459|SLC24A5	ENSG00000188467|ENST00000341459|SLC24A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7906494140625	2	487.790807	973.56706	-0.9621	-0.0004693	0.54832	0.00026747	-0.41377	-0.00020183	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.82104	1	10460	10460		57.453	14.978	1	1891000			27039	9721	18628	18665	31161	31161					0.07921964587308139
ILWDHDLN	8	Unmodified	_ILWDHDLN_					0	0	0		ENST00000406175.3_1_2:42513330-42557344:+|nuORF;nc|ENSG00000143924|Q9HC35-2|EML4;ENSG00000143924|ENST00000318522|EML4	ENST00000406175.3_1_2:42513330-42557344:+|nuORF	ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.28466796875	2	513.256174	1024.49779	-0.47365	-0.0002431	4.1419	0.0021259	3.6683	0.0018828	513.2582513769001	61.663	0.53158	61.663	61.374	61.906	0					28	13	3	0	0	0	0.027866	1	7172	7172		26.796	17.613	1	567680			27040	5701	18629	18666	31162	31162					-0.013474031079113047
ILWEHLEIL	9	Unmodified	_ILWEHLEIL_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.3341064453125	2	583.334424	1164.6543	0.021885	1.2766E-05	-0.38573	-0.00022501	-0.36385	-0.00021224	583.3340233413905	84.792	1.5034	84.633	84.321	85.825	-0.15869					88	35	4	0	0	0	0.13494	1	10273	10273		102.77	15.019	1	2075600			27041	4845	18630	18667	31163	31163					0.07855462062548213
ILWETVPSM	9	Oxidation (M)	_ILWETVPSM(Oxidation (M))_		ILWETVPSM(1)		ILWETVPSM(160)	0	0	1		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2760009765625	2	546.275718	1090.53688	-1.0582	-0.00057806	2.4959	0.0013634	1.4377	0.00078539	546.2759855617678	73.156	2.0983	73.156	72.698	74.796	0					105	51	4	0	0	0	0.015769	8	8918	8894;8906;8918;8930;8938;8950;8954;8976		157.99	73.182	1	23317000			27042	1558	18631	18668	31164;31165;31166;31167;31168;31169;31170;31171	31166		51			-0.004764388685543963
ILWETVPSM	9	Oxidation (M)	_ILWETVPSM(Oxidation (M))_		ILWETVPSM(1)		ILWETVPSM(150)	0	0	1		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.275634765625	2	546.275718	1090.53688	-0.81344	-0.00044436	2.1335	0.0011655	1.3201	0.00072111	546.2758461432859	73.501	2.9632	73.23	72.557	75.52	-0.27126					127	74	4	0	0	0	0.016838	8	8911	8911;8923;8936;8948;8954;8960;8966;8978		152.63	78.378	1	23352000			27043	1558	18631	18668	31172;31173;31174;31175;31176;31177;31178;31179	31172		51			-0.004764388685543963
ILWETVPSM	9	Oxidation (M)	_ILWETVPSM(Oxidation (M))_		ILWETVPSM(1)		ILWETVPSM(170)	0	0	1		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2760009765625	2	546.275718	1090.53688	-0.92028	-0.00050273	2.3814	0.0013009	1.4611	0.00079817	546.2759497326451	73.195	2.3221	73.205	72.611	74.933	0.0096512					110	56	4	0	0	0	0.013805	8	8834	8822;8834;8846;8866;8878;8882;8890;8896		167.82	82.465	1	24235000			27044	1558	18631	18668	31180;31181;31182;31183;31184;31185;31186;31187	31181		51			-0.004764388685543963
ILWETVPSM	9	Oxidation (M)	_ILWETVPSM(Oxidation (M))_		ILWETVPSM(1)		ILWETVPSM(120)	0	0	1		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2761840820312	2	546.275718	1090.53688	-0.20048	-0.00010952	0.28628	0.00015639	0.085803	4.6872E-05	546.2758396528365	77.703	4.0541	77.441	77.06	81.114	-0.26202					197	96	3	0	0	0	0.074956	5	9286	9250;9274;9286;9299;9311		119.56	53.616	1	1638500			27045	1558	18631	18668	31188;31189;31190;31191;31192	31190		51			-0.004764388685543963
ILWETVPSM	9	Oxidation (M)	_ILWETVPSM(Oxidation (M))_		ILWETVPSM(1)		ILWETVPSM(97)	0	0	1		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2756958007812	2	546.275718	1090.53688	0.43236	0.00023619	-0.36551	-0.00019967	0.066849	3.6518E-05	546.2754935838424	77.722	5.7906	77.48	77.041	82.832	-0.24232					225	137	3	0	0	0	0.15889	4	9264	9240;9264;9288;9300		97.473	28.988	1	1722100			27046	1558	18631	18668	31193;31194;31195;31196	31194		51			-0.004764388685543963
ILWETVPSM	9	Oxidation (M)	_ILWETVPSM(Oxidation (M))_		ILWETVPSM(1)		ILWETVPSM(120)	0	0	1		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2760009765625	2	546.275718	1090.53688	-0.52111	-0.00028467	0.538	0.0002939	0.016897	9.2303E-06	546.2759398979144	77.659	4.3143	77.497	77.024	81.338	-0.16196					192	102	4	0	0	0	0.08613	5	9256	9235;9256;9268;9279;9292		115.46	46.974	1	1561000			27047	1558	18631	18668	31197;31198;31199;31200;31201	31198		51			-0.004764388685543963
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2778930664062	2	538.27826	1074.54197	-0.17605	-9.4764E-05	-0.24749	-0.00013322	-0.42354	-0.00022798	538.2781114540444	84.585	2.1714	84.585	84.128	86.3	0					127	51	5	0	0	0	0.013492	7	10570	10570;10580;10592;10604;10617;10630;10643		200.96	104.77	1	20182000			27048	1558	18631	18669	31202;31203;31204;31205;31206;31207;31208	31202					0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2780151367188	2	538.27826	1074.54197	-1.1514	-0.00061977	0.59866	0.00032225	-0.55273	-0.00029752	538.2786444872825	84.56	2.3042	84.488	84.091	86.395	-0.072769					147	54	3	0	0	0	0.013805	7	10581	10536;10545;10557;10569;10581;10594;10609		200.96	104.77	1	19756000			27049	1558	18631	18669	31209;31210;31211;31212;31213;31214;31215	31213					0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.27783203125	2	538.27826	1074.54197	-1.0728	-0.00057747	0.5385	0.00028986	-0.5343	-0.0002876	538.2786141712747	84.533	2.4334	84.559	84.075	86.509	0.026558					147	57	3	0	0	0	0.014251	7	10498	10478;10488;10498;10510;10522;10534;10548		200.96	104.77	1	19436000			27050	1558	18631	18669	31216;31217;31218;31219;31220;31221;31222	31218					0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2778930664062	2	538.27826	1074.54197	0.18264	9.8313E-05	-0.097035	-5.2232E-05	0.085608	4.6081E-05	538.2781490363919	84.615	1.9371	84.411	84.038	85.975	-0.20329					109	45	5	0	0	0	0.013492	5	10214	10205;10214;10226;10238;10251		193.98	85.89	1	5261900			27051	1558	18631	18669	31223;31224;31225;31226;31227	31224					0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2783813476562	2	538.27826	1074.54197	0.40059	0.00021563	-0.41112	-0.0002213	-0.010526	-5.666E-06	538.2779875955088	84.558	1.6317	84.4	84.02	85.651	-0.15869					100	38	4	0	0	0	0.015527	5	10227	10217;10227;10239;10251;10266		211.23	103.2	1	5108000			27052	1558	18631	18669	31228;31229;31230;31231;31232	31229					0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2783203125	2	538.27826	1074.54197	-0.26137	-0.00014069	0.1333	7.175E-05	-0.12807	-6.8939E-05	538.2782681059042	84.566	1.7241	84.428	84.064	85.788	-0.13789					86	40	3	0	0	0	0.013492	5	10213	10202;10213;10224;10236;10252		200.96	85.497	1	5352600			27053	1558	18631	18669	31233;31234;31235;31236;31237	31234					0.00767864994077172
ILWFPGSV	8	Unmodified	_ILWFPGSV_					0	0	0		ENST00000264057.6_1_2:234378928-234379132:+|nuORF	ENST00000264057.6_1_2:234378928-234379132:+|nuORF	ENST00000264057.6_1_2:234378928-234379132:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2690124511719	2	459.757821	917.501089	-0.10801	-4.9656E-05	-3.4092	-0.0015674	-3.5172	-0.0016171	459.7557448162021	67.621	0.58177	67.387	67.175	67.756	-0.23376					16	13	2	0	0	0	0.027866	1	7795	7795		33.516	0	1	125760			27054	11552	18632	18670	31238	31238					0.039038917367633985
ILWHFKLSTPR	11	Unmodified	_ILWHFKLSTPR_					0	0	0		ENST00000581471.2_1_18:5239176-5239272:+|nuORF	ENST00000581471.2_1_18:5239176-5239272:+|nuORF	ENST00000581471.2_1_18:5239176-5239272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.6087341308594	3	466.60659	1396.79794	1.1632	0.00054277	1.3949	0.00065086	2.5581	0.0011936	466.6070891322418	97.746	1.1433	97.623	96.706	97.849	-0.12368					48	25	3	0	0	0	1.0712	1	12078	12078		19.263	0.73163	1	244850			27055	17164	18633	18671	31239	31239					0.11541308893492896
ILWHVGLL	8	Unmodified	_ILWHVGLL_					0	0	0		PIGQ|p.S376L|1|0.27|ENSG00000007541|chr16:578842-578842|C/T|missense_variant	PIGQ|p.S376L|1|0.27|ENSG00000007541|chr16:578842-578842|C/T|missense_variant	PIGQ|p.S376L|1|0.27|ENSG00000007541|chr16:578842-578842|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.2605285644531	2	475.794738	949.574923	-0.17616	-8.3817E-05	-1.7931	-0.00085315	-1.9693	-0.00093697	475.79280942101775	40.776	0.14315	40.551	40.476	40.619	-0.22501					5	3	2	0	0	0	0.027866	1	3538	3538		16.705	0	1	68178			27056	18964	18634	18672	31240	31240					0.09811859899093633
ILWIMPAF	8	Unmodified	_ILWIMPAF_					0	0	0		ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2923889160156	2	495.777699	989.540846	-0.45132	-0.00022376	-2.9421	-0.0014586	-3.3934	-0.0016824	495.77618830057344	68.462	0.23798	68.201	68.063	68.301	-0.26166					8	5	2	0	0	0	0.027866	1	7922	7922		24.504	0	1	208820			27057	9188	18635	18673	31241	31241					0.04565695415817572
ILWKPGAPF	9	Unmodified	_ILWKPGAPF_					0	0	0		nc|ENSG00000172955|P28332|ADH6;ENSG00000172955|ENST00000394899|ADH6	nc|ENSG00000172955|P28332|ADH6	nc|ENSG00000172955|P28332|ADH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8189086914062	2	514.80002	1027.58549	-0.89572	-0.00046112	-3.8737	-0.0019942	-4.7694	-0.0024553	514.7978450682759	68.659	0.52449	68.398	68.181	68.706	-0.26165					27	12	3	0	0	0	0.024497	1	7938	7938		13.775	0	1	394950			27058	8327	18636	18674	31242	31242					0.07279842553521121
ILWLTMVW	8	Unmodified	_ILWLTMVW_					0	0	0		nc|ENSG00000196678|A8K979-4|ERI2	nc|ENSG00000196678|A8K979-4|ERI2	nc|ENSG00000196678|A8K979-4|ERI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.31787109375	2	531.296256	1060.57796	-0.84301	-0.00044789	-3.2088	-0.0017048	-4.0518	-0.0021527	531.2943546683579	43.243	0.69933	43.017	42.714	43.413	-0.22597					47	18	3	0	0	0	0.027866	1	3947	3947		57.453	10.686	1	2307700			27059	18630	18637	18675	31243	31243					0.05009366961576234
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3255615234375	2	542.326068	1082.63758	-0.62864	-0.00034093	0.53065	0.00028779	-0.09799	-5.3143E-05	542.3259489384606	103.93	0.62637	103.93	103.71	104.33	0					33	14	3	0	0	0	0.15889	3	13337	13327;13337;13349		97.473	46.137	1	220700			27060	13036	18638	18676	31244;31245;31246	31245					0.09956961176612822
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.3253784179688	2	542.326068	1082.63758	-0.088642	-4.8073E-05	0.07516	4.0761E-05	-0.013483	-7.312E-06	542.3258082542122	103.8	0.63511	103.67	103.44	104.08	-0.12724					36	15	3	0	0	0	0.040175	3	12902	12902;12911;12923		133.47	67.04	1	881620			27061	13036	18638	18676	31247;31248;31249	31247					0.09956961176612822
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.3258666992188	2	542.326068	1082.63758	-0.59414	-0.00032222	0.63779	0.00034589	0.043652	2.3674E-05	542.3261880722206	103.85	0.60041	103.72	103.45	104.06	-0.12928					44	14	5	0	0	0	0.049585	1	12927	12927		128.86	64.654	1	702320			27062	13036	18638	18676	31250	31250					0.09956961176612822
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.326068	1082.63758	-0.61137	-0.00033156	0.85258	0.00046238	0.24121	0.00013081	542.3260445880848	103.92	0.44696	103.92	103.7	104.15	0.0031357	0.094687	0.00042838	NaN	133.47	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189440			27063	13036	18638	18676							0.09956961176612822
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.326068	1082.63758	-0.55795	-0.00030259	0.45414	0.00024629	-0.10381	-5.6299E-05	542.3258735077802	103.97	0.48393	103.97	103.77	104.25	-0.0032196	0.14046	-3.7897E-06	NaN	133.47	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158590			27064	13036	18638	18676							0.09956961176612822
ILWPVEITL	9	Unmodified	_ILWPVEITL_					0	0	0		ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	ENST00000372348.6_1_9:133729537-133729609:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.326068	1082.63758	-0.40067	-0.00021729	0.43664	0.0002368	0.035969	1.9507E-05	542.326074678431	103.91	0.53197	103.74	103.48	104.02	-0.16791	-0.081333	-2.2769E-05	NaN	133.47	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	743790			27065	13036	18638	18676							0.09956961176612822
ILWRDGQW	8	Unmodified	_ILWRDGQW_					0	0	0			REV__ENST00000399503.3_1_5:56180611-56181782:+|nuORF	REV__ENST00000399503.3_1_5:56180611-56181782:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2782592773438	2	537.279983	1072.54541	-0.40621	-0.00021825	-2.2408	-0.001204	-2.647	-0.0014222	537.2787620259766	24.599	0.72274	24.677	24.41	25.132	0.078344					35	15	4	0	0	0	0.68164	1	1033	1033		68.787	10.557	1	745280	+		27066	31832	18639	18677	31251	31251					0.012042958829397321
ILWRDGQW	8	Unmodified	_ILWRDGQW_					0	0	0			REV__ENST00000399503.3_1_5:56180611-56181782:+|nuORF	REV__ENST00000399503.3_1_5:56180611-56181782:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.278564453125	2	537.279983	1072.54541	-0.64344	-0.00034571	-1.8415	-0.00098942	-2.485	-0.0013351	537.2788359831001	24.913	0.52416	24.686	24.451	24.975	-0.22683					27	11	3	0	0	0	0.87148	1	1139	1139		53.351	3.8154	1	910880	+		27067	31832	18639	18677	31252	31252					0.012042958829397321
ILWRDGQW	8	Unmodified	_ILWRDGQW_					0	0	0			REV__ENST00000399503.3_1_5:56180611-56181782:+|nuORF	REV__ENST00000399503.3_1_5:56180611-56181782:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.278564453125	2	537.279983	1072.54541	1.1324	0.00060843	-3.5579	-0.0019116	-2.4254	-0.0013031	537.2779333264632	24.783	0.48143	24.603	24.374	24.855	-0.18089					27	10	4	0	0	0	0.77775	1	1105	1105		60.972	19.545	1	825010	+		27068	31832	18639	18677	31253	31253					0.012042958829397321
ILWRRPSQ	8	Unmodified	_ILWRRPSQ_					0	0	0		ENSG00000163832|ENST00000296149|ELP6	ENSG00000163832|ENST00000296149|ELP6	ENSG00000163832|ENST00000296149|ELP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3267211914062	2	528.309075	1054.6036	-0.14256	-7.5315E-05	1.8768	0.00099154	1.7343	0.00091622	528.3098073432868	66.006	0.19185	66.006	65.913	66.105	0					6	4	2	0	0	0	0.027866	1	7847	7847		35.201	13.241	1	59927			27069	7155	18640	18678	31254	31254					0.07847977528217598
ILWSDIPEL	9	Unmodified	_ILWSDIPEL_					0	0	0			REV__nc|ENSG00000175662|Q6ZVM7-5|TOM1L2	REV__nc|ENSG00000175662|Q6ZVM7-5|TOM1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8211059570312	2	543.297507	1084.58046	-1.4468	-0.00078605	-3.9243	-0.002132	-5.3711	-0.0029181	543.29518902361	47.756	0.38443	47.815	47.615	47.999	0.059097					19	11	2	0	0	0	0.024	1	4765	4765		65.803	0	1	1082800	+		27070	36961	18641	18679	31255	31255					0.04155493900225338
ILWSEAIFL	9	Unmodified	_ILWSEAIFL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.3102416992188	2	546.310418	1090.60628	-0.83087	-0.00045391	0.83224	0.00045466	0.0013663	7.4641E-07	546.31079099218	103.38	1.6409	103.38	103	104.64	0					104	39	4	0	0	0	0.021668	3	13279	13256;13268;13279		148.21	56.015	1	1464200			27071	2288	18642	18680	31256;31257;31258	31258					0.06460388142522788
ILWSEAIFL	9	Unmodified	_ILWSEAIFL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.3103637695312	2	546.310418	1090.60628	-0.64254	-0.00035102	0.79088	0.00043206	0.14834	8.104E-05	546.3107265955678	103.33	1.5115	103.33	102.89	104.4	0.0054169					98	37	4	0	0	0	0.021668	4	13221	13211;13221;13232;13245		148.21	56.015	1	1698800			27072	2288	18642	18680	31259;31260;31261;31262	31260					0.06460388142522788
ILWSEAIFL	9	Unmodified	_ILWSEAIFL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.3101196289062	2	546.310418	1090.60628	-0.5767	-0.00031506	0.67264	0.00036747	0.095939	5.2412E-05	546.310717501939	103.41	1.3974	103.4	102.94	104.34	-0.0046082					89	33	4	0	0	0	0.021668	3	13192	13182;13192;13206		148.21	46.289	1	1328700			27073	2288	18642	18680	31263;31264;31265	31264					0.06460388142522788
ILWSEAIFL	9	Unmodified	_ILWSEAIFL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.3098754882812	2	546.310418	1090.60628	0.070677	3.8611E-05	0.17988	9.8272E-05	0.25056	0.00013688	546.3103900579912	103.19	0.92564	103.06	102.9	103.83	-0.12724					55	21	4	0	0	0	0.0146	3	12831	12821;12831;12843		163.84	58.575	1	1037300			27074	2288	18642	18680	31266;31267;31268	31267					0.06460388142522788
ILWSEAIFL	9	Unmodified	_ILWSEAIFL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.31005859375	2	546.310418	1090.60628	-0.3308	-0.00018072	0.573	0.00031304	0.2422	0.00013232	546.310564325464	103.24	1.0418	103.11	102.87	103.91	-0.12783					55	24	4	0	0	0	0.074956	3	12851	12841;12851;12861		119.56	32.727	1	1258400			27075	2288	18642	18680	31269;31270;31271	31270					0.06460388142522788
ILWSEAIFL	9	Unmodified	_ILWSEAIFL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.309814453125	2	546.310418	1090.60628	-0.1097	-5.9928E-05	0.045578	2.49E-05	-0.064118	-3.5028E-05	546.3103967190627	103.31	0.93987	103.14	102.91	103.85	-0.17034					73	22	4	0	0	0	0.01627	4	12832	12824;12832;12843;12853		198.32	79.103	1	1125500			27076	2288	18642	18680	31272;31273;31274;31275	31273					0.06460388142522788
ILYDPLEIAS	10	Unmodified	_ILYDPLEIAS_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.32958984375	2	567.308072	1132.60159	-0.38857	-0.00022044	3.1682	0.0017974	2.7796	0.0015769	567.3105013263462	88.82	0.21275	88.836	88.71	88.923	0.015907					6	4	2	0	0	0	0.03519	1	11128	11128		27.882	6.9353	1	28162	+		27077	22434	18643	18681	31276	31276					0.040594592091110826
ILYETVLTI	9	Unmodified	_ILYETVLTI_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.81640625	2	532.815533	1063.61651	-0.15178	-8.0869E-05	-0.20768	-0.00011065	-0.35945	-0.00019152	532.8151563003618	88.746	1.0112	88.746	88.47	89.481	0					51	23	4	0	0	0	0.040175	2	11182	11182;11193		133.47	32.257	1	1201000			27078	7600	18644	18682	31277;31278	31277					0.08724951077078913
ILYETVLTI	9	Unmodified	_ILYETVLTI_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.81640625	2	532.815533	1063.61651	0.30947	0.00016489	-0.47544	-0.00025332	-0.16597	-8.8432E-05	532.815068640757	88.725	0.63566	88.698	88.433	89.068	-0.027664					40	14	4	0	0	0	0.015769	2	11147	11147;11159		157.99	47.652	1	1165500			27079	7600	18644	18682	31279;31280	31279					0.08724951077078913
ILYETVLTI	9	Unmodified	_ILYETVLTI_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.8157348632812	2	532.815533	1063.61651	0.083908	4.4708E-05	-0.40113	-0.00021373	-0.31723	-0.00016902	532.8151083810496	88.784	0.76355	88.8	88.494	89.257	0.015907					53	17	4	0	0	0	0.028181	2	11124	11112;11124		143.02	45.547	1	1054300			27080	7600	18644	18682	31281;31282	31282					0.08724951077078913
ILYGKYFL	8	Unmodified	_ILYGKYFL_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.32586669921875	2	508.794404	1015.57425	-0.12565	-6.3932E-05	-0.17876	-9.095E-05	-0.30441	-0.00015488	508.7941385890736	77.531	0.577	77.531	77.382	77.959	0					25	13	2	0	0	0	0.027866	1	9604	9604		54.765	30.562	1	257550	+		27081	25683	18645	18683	31283	31283					0.06709020459368276
ILYHFHAV	8	Unmodified	_ILYHFHAV_					0	0	0			REV__ENSG00000101544|ENST00000262198|ADNP2	REV__ENSG00000101544|ENST00000262198|ADNP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.2715148925781	2	500.27417	998.533787	-0.33683	-0.00016851	-3.9469	-0.0019745	-4.2837	-0.002143	500.27207995308834	22.083	1.0338	22.083	21.723	22.757	0					41	21	2	0	0	0	0.5493	1	741	741		80.997	20.025	1	506350	+		27082	21241	18646	18684	31284	31284					0.034460988596151765
ILYHFHAV	8	Unmodified	_ILYHFHAV_					0	0	0			REV__ENSG00000101544|ENST00000262198|ADNP2	REV__ENSG00000101544|ENST00000262198|ADNP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2716979980469	2	500.27417	998.533787	-0.97623	-0.00048838	-3.2386	-0.0016202	-4.2149	-0.0021086	500.2723951072975	21.979	1.4308	22.051	21.451	22.882	0.071487					68	29	4	0	0	0	0.69959	2	679	679;698		67.327	9.5159	1	489750	+		27083	21241	18646	18684	31285;31286	31285					0.034460988596151765
ILYHFSLE	8	Unmodified	_ILYHFSLE_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2537231445312	2	511.271293	1020.52803	0.73035	0.00037341	2.4375	0.0012462	3.1678	0.0016196	511.273354370626	54.508	0.37375	54.302	54.237	54.611	-0.20613					17	9	2	0	0	0	0.027866	1	5806	5806		35.201	0	1	516880	+		27084	22909	18647	18685	31287	31287					0.018589555572816607
ILYIGCTDLAL	11	Unmodified	_ILYIGCTDLAL_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.8562622070312	2	597.825575	1193.6366	-0.40761	-0.00024368	-2.1072	-0.0012597	-2.5148	-0.0015034	597.8241313669274	94.482	0.5854	94.334	94.086	94.672	-0.14771					32	13	3	0	0	0	0.024729	1	11602	11602		37.159	9.2769	1	311640	+		27085	25347	18648	18686	31288	31288					0.04752378745411079
ILYIGCTDLAL	11	Unmodified	_ILYIGCTDLAL_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	597.825575	1193.6366	-1.417	-0.00084711	-1.1709	-0.00069999	-2.5879	-0.0015471	597.8247077394941	94.594	0.80598	94.594	94.244	95.05	0	0.17595	0.00054151	NaN	29.15	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537350	+		27086	25347	18648	18686							0.04752378745411079
ILYIGCTDLAL	11	Unmodified	_ILYIGCTDLAL_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	597.825575	1193.6366	-0.77447	-0.000463	-1.7496	-0.0010459	-2.524	-0.0015089	597.8243356626808	94.475	0.76007	94.475	94.15	94.91	-0.00023651	0.05712	-0.00015037	NaN	29.15	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544040	+		27087	25347	18648	18686							0.04752378745411079
ILYIGCTDLAL	11	Unmodified	_ILYIGCTDLAL_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	597.825575	1193.6366	-0.99716	-0.00059613	-1.4509	-0.00086741	-2.4481	-0.0014635	597.8244344516339	94.511	0.72032	94.517	94.247	94.967	0.0057373	0.099515	0.00020666	NaN	29.15	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675150	+		27088	25347	18648	18686							0.04752378745411079
ILYLLTDQN	9	Unmodified	_ILYLLTDQN_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.8133544921875	2	546.800414	1091.58628	-0.43429	-0.00023747	-0.099197	-5.4241E-05	-0.53349	-0.00029171	546.8003754112075	69.697	0.5312	69.697	69.423	69.954	0					18	12	2	0	0	0	0.024412	1	8371	8371		31.955	9.995	1	208750			27089	6278	18649	18687	31289	31289					0.04414592411899321
ILYLLTDQN	9	Unmodified	_ILYLLTDQN_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.800414	1091.58628	0.089696	4.9046E-05	-1.1189	-0.0006118	-1.0292	-0.00056276	546.8000063768284	70.099	0.45146	69.806	69.509	69.96	-0.29291	0.054353	-0.00037947	NaN	24.203	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204780			27090	6278	18649	18687							0.04414592411899321
ILYMAAAIVY	10	Unmodified	_ILYMAAAIVY_					0	0	0		MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-3|MARVELD2;ENSG00000152939|ENST00000325631|MARVELD2;nc|ENSG00000152939|Q8N4S9-2|MARVELD2	MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.3142700195312	2	564.312103	1126.60965	0.10709	6.0431E-05	3.2284	0.0018218	3.3355	0.0018822	564.3138873255734	59.631	0.63846	59.382	59.01	59.648	-0.24841					38	15	3	0	0	0	0.72076	1	6590	6590		65.897	2.5912	1	1609800			27091	6308	18650	18688	31290	31290					0.05141314924844664
ILYPHEAPSW	10	Unmodified	_ILYPHEAPSW_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	607.803955078125	2	606.806031	1211.59751	-0.95774	-0.00058116	1.5394	0.0009341	0.58162	0.00035293	606.8068192116658	61.034	0.9205	60.828	60.421	61.341	-0.20599					37	22	2	0	0	0	0.03519	1	6819	6819		53.351	3.9099	1	637010			27092	1991	18651	18689	31291	31291					0.0001741450603276462
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3441162109375	2	554.344261	1106.67397	0.34479	0.00019113	-0.63214	-0.00035042	-0.28735	-0.00015929	554.3437982069335	77.076	1.8544	77.076	76.719	78.573	0					132	44	4	0	0	0	0.015901	7	9525	9491;9500;9512;9525;9540;9551;9562		157.33	54.037	1	7013000			27093	5291	18652	18690	31292;31293;31294;31295;31296;31297;31298	31295					0.12489838073315696
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.34423828125	2	554.344261	1106.67397	-0.30425	-0.00016866	0.21245	0.00011777	-0.091799	-5.0888E-05	554.3442259508357	77.241	2.1141	77.03	76.708	78.822	-0.21087					135	50	5	0	0	0	0.033448	5	9519	9485;9496;9507;9519;9535		138.83	37.26	1	6155600			27094	5291	18652	18690	31299;31300;31301;31302;31303	31302					0.12489838073315696
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3441772460938	2	554.344261	1106.67397	-0.030294	-1.6793E-05	-0.1448	-8.0267E-05	-0.17509	-9.706E-05	554.344081060851	77.111	2.4502	77.124	76.777	79.228	0.013504					130	58	4	0	0	0	0.03201	6	9443	9420;9430;9443;9455;9469;9482		139.97	57.22	1	6888900			27095	5291	18652	18690	31304;31305;31306;31307;31308;31309	31306					0.12489838073315696
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.3446655273438	2	554.344261	1106.67397	0.35053	0.00019431	-0.15396	-8.5346E-05	0.19657	0.00010897	554.3440067571802	77.162	0.88404	76.894	76.595	77.479	-0.26806					53	21	4	0	0	0	0.17822	3	9164	9152;9164;9176		93.195	24.409	1	2150100			27096	5291	18652	18690	31310;31311;31312	31311					0.12489838073315696
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3439331054688	2	554.344261	1106.67397	0.59817	0.00033159	-0.38258	-0.00021208	0.21559	0.00011951	554.3439177557184	77.11	1.1588	76.858	76.571	77.729	-0.25163					63	28	4	0	0	0	0.17822	2	9164	9164;9176		93.195	24.409	1	1912900			27097	5291	18652	18690	31313;31314	31313					0.12489838073315696
ILYPKTLFL	9	Unmodified	_ILYPKTLFL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3439331054688	2	554.344261	1106.67397	-0.49942	-0.00027685	0.60063	0.00033296	0.10121	5.6106E-05	554.3444030162519	76.98	1.0387	76.811	76.482	77.52	-0.16854					50	24	4	0	0	0	0.17822	2	9134	9126;9134		93.195	27.392	1	2431300			27098	5291	18652	18690	31315;31316	31316					0.12489838073315696
ILYPQDLAD	9	Unmodified	_ILYPQDLAD_					0	0	0		ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.K1607Rfs*9|1|0.08|ENSG00000116127|chr2:73451341-73451341|A/-|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3259887695312	2	524.27149	1046.52843	-1.2916	-0.00067716	4.0904	0.0021445	2.7988	0.0014673	524.2734922417591	79.778	0.79436	79.606	79.069	79.863	-0.17226					45	18	3	0	0	0	0.024405	1	9852	9852		35.618	8.9254	1	343380			27099	64	18653	18691	31317	31317					0.00702330486478786
ILYPSTLFL	9	Unmodified	_ILYPSTLFL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.317138671875	2	533.812793	1065.61103	-0.77541	-0.00041392	1.3232	0.00070636	0.54782	0.00029244	533.8129263960766	96.705	0.88234	96.705	96.398	97.28	0					34	19	3	0	0	0	0.023775	1	12330	12330		57.811	0	1	280920			27100	2853	18654	18692	31318	31318					0.08085272285279643
ILYQNPKTL	9	Unmodified	_ILYQNPKTL_					0	0	0		ENST00000434942.1_1_22:32664397-32665363:+|nuORF	ENST00000434942.1_1_22:32664397-32665363:+|nuORF	ENST00000434942.1_1_22:32664397-32665363:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165283203125	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.6504	1	10748	10748		49.442	1.7842	1	3635800			27101	14255	18655	18693	31319	31319					0.08222889028479585
ILYREVLI	8	Unmodified	_ILYREVLI_					0	0	0			REV__ENST00000587765.1_1_19:38282860-38283352:+|nuORF	REV__ENST00000587765.1_1_19:38282860-38283352:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8183288574219	2	509.81841	1017.62227	-0.074488	-3.7976E-05	-0.19963	-0.00010178	-0.27412	-0.00013975	509.8181687725682	75.061	1.4837	74.802	74.451	75.934	-0.25887					70	38	4	0	0	0	0.38451	1	9150	9150		99.375	1.9023	1	4516300	+		27102	35633	18656	18694	31320	31320					0.11416094379421793
ILYRIGPPI	9	Unmodified	_ILYRIGPPI_					0	0	0			REV__ENST00000248598.5_1_7:76825532-76825589:-|nuORF	REV__ENST00000248598.5_1_7:76825532-76825589:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.30859375	2	521.326402	1040.63825	-0.82113	-0.00042808	-3.7173	-0.0019379	-4.5385	-0.002366	521.3243568271946	30.519	0.53856	30.593	30.337	30.875	0.074314					22	12	2	0	0	0	0.024541	1	1944	1944		28.254	9.9922	1	150390	+		27103	29484	18657	18695	31321	31321					0.11955800616328816
ILYTILRTN	9	Unmodified	_ILYTILRTN_					0	0	0		OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant;ENSG00000148136|ENST00000277216|OR13C4	OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant	OR13C4|p.M290Cfs*2|1|0.4|ENSG00000148136|chr9:104526343-104526343|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8302001953125	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	0.96322	1	10732	10732		27.882	2.3082	1	1623500			27104	6005	18658	18696	31322	31322					0.10094577919835501
ILYVVEEPE	9	Unmodified	_ILYVVEEPE_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3024291992188	2	545.786973	1089.55939	-0.37662	-0.00020556	1.2797	0.00069842	0.90304	0.00049287	545.7875016110773	63.311	1.1359	63.127	62.671	63.807	-0.18386					68	28	3	0	0	0	0.024354	1	7183	7183		38.806	17.859	1	691480			27105	10934	18659	18697	31323	31323					0.01819483800704802
ILYVVEEPE	9	Unmodified	_ILYVVEEPE_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.302734375	2	545.786973	1089.55939	-0.23576	-0.00012868	1.2255	0.00066886	0.98973	0.00054018	545.787503842896	63.396	1.2024	63.138	62.631	63.833	-0.25824					75	30	3	0	0	0	0.024354	1	7182	7182		30.504	6.9809	1	652500			27106	10934	18659	18697	31324	31324					0.01819483800704802
ILYWVGLLI	9	Unmodified	_ILYWVGLLI_					0	0	0			REV__ENSG00000104341|ENST00000521545|LAPTM4B	REV__ENSG00000104341|ENST00000521545|LAPTM4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3167114257812	2	545.338978	1088.6634	-0.24074	-0.00013128	-3.5265	-0.0019232	-3.7673	-0.0020544	545.3374493197562	88.964	0.33484	88.964	88.767	89.102	0					11	7	2	0	0	0	0.024475	1	11222	11222		14.664	0	1	70745	+		27107	21435	18660	18698	31325	31325					0.12261855418910272
IMAEGGPQELY	11	Unmodified	_IMAEGGPQELY_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.2844848632812	2	604.286814	1206.55907	-0.72873	-0.00044036	-2.1074	-0.0012735	-2.8361	-0.0017138	604.2854321515616	62.154	0.65923	61.94	61.624	62.283	-0.21375					50	16	4	0	0	0	0.28368	1	6983	6983		90.601	24.172	1	3222700	+		27108	27294	18661	18699	31326	31326					-0.03594259190776938
IMAEGGPQELY	11	Unmodified	_IMAEGGPQELY_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.28515625	2	604.286814	1206.55907	-1.2362	-0.00074701	-1.6806	-0.0010156	-2.9168	-0.0017626	604.2857107819184	62.059	0.72795	61.881	61.576	62.304	-0.17781					57	18	4	0	0	0	0.099923	2	6965	6965;6991		109.48	24.318	1	3286600	+		27109	27294	18661	18699	31327;31328	31327					-0.03594259190776938
IMAEGGPQELY	11	Unmodified	_IMAEGGPQELY_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	604.286814	1206.55907	-1.2362	-0.00074701	-1.6806	-0.0010156	-2.9168	-0.0017626	604.2857107819184	62.059	0.72795	61.881	61.576	62.304	-0.17781	-0.051049	0.00049842	NaN	109.48	57	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3286600	+		27110	27294	18661	18699							-0.03594259190776938
IMAEGGPQELY	11	Unmodified	_IMAEGGPQELY_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	604.286814	1206.55907	-0.42352	-0.00025593	-2.4705	-0.0014929	-2.894	-0.0017488	604.285200230153	62.233	0.6226	61.975	61.667	62.289	-0.25771	0.043308	-0.0004562	NaN	109.48	52	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3319300	+		27111	27294	18661	18699							-0.03594259190776938
IMAIFVPID	9	Unmodified	_IMAIFVPID_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7852478027344	2	509.785721	1017.55689	-0.23415	-0.00011937	4.3545	0.0022199	4.1204	0.0021005	509.7876386284778	59.553	0.55426	59.639	59.389	59.943	0.085682					32	14	3	0	0	0	0.4855	1	6732	6732		60.294	5.5293	1	2692800	+		27112	23325	18662	18700	31329	31329					0.048813568620630576
IMAIFVPID	9	Unmodified	_IMAIFVPID_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	509.785721	1017.55689	-0.23415	-0.00011937	4.3545	0.0022199	4.1204	0.0021005	509.7876386284778	59.553	0.55426	59.639	59.389	59.943	0.085682	-0.03646	0.0002448	NaN	60.294	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2692800	+		27113	23325	18662	18700							0.048813568620630576
IMAKHFIL	8	Oxidation (M)	_IM(Oxidation (M))AKHFIL_		IM(1)AKHFIL		IM(66)AKHFIL	0	0	1		ENST00000500698.1_1_11:9778373-9781063:-|nuORF	ENST00000500698.1_1_11:9778373-9781063:-|nuORF	ENST00000500698.1_1_11:9778373-9781063:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7872619628906	2	494.786056	987.557558	-0.53009	-0.00026228	3.0818	0.0015248	2.5517	0.0012625	494.78830879190554	30.342	0.9868	30.351	29.637	30.624	0.0086689					53	23	4	0	0	0	0.71717	1	1931	1931		65.897	8.0862	1	1135500			27114	15646	18663	18701	31330	31330		522			0.06328196301785738
IMALKMEL	8	Oxidation (M)	_IMALKM(Oxidation (M))EL_		IMALKM(1)EL		IM(-37)ALKM(37)EL	0	0	1		ENSG00000171357|ENST00000371980|LURAP1	ENSG00000171357|ENST00000371980|LURAP1	ENSG00000171357|ENST00000371980|LURAP1	MSMS	OPSCC_40_ClassI_Rep-3	6	482.762451171875	2	482.763932	963.51331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.399	1	87.262	86.762	87.762	-0.13734								0	0	0	0.40422	1	10618	10618		66.429	8.1994	2				27115	8141	18664	18702	31331	31331		337			0.03009424093272628
IMAPGLLHAYP	11	Unmodified	_IMAPGLLHAYP_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000465855.5_1_1:154229859-154231353:+|nuORF;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	591.8194580078125	2	591.820627	1181.6267	-0.46826	-0.00027712	-2.7566	-0.0016314	-3.2248	-0.0019085	591.818920773787	80.618	0.86328	80.411	80.132	80.996	-0.20632					49	20	4	0	0	0	0.98311	1	9690	9690		40.573	3.4135	1	1011600			27116	5667	18665	18703	31332	31332					0.043152355306574464
IMDATNILV	9	Unmodified	_IMDATNILV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2704772949219	2	495.270435	988.526318	0.3829	0.00018964	-1.0862	-0.00053799	-0.70334	-0.00034834	495.2698097064133	77.639	1.3631	77.639	77.295	78.658	0					66	32	3	0	0	0	0.067814	1	9574	9574		122.18	10.528	1	6250800			27117	7843	18666	18704	31333	31333					0.031595784770274804
IMDATNILV	9	Unmodified	_IMDATNILV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.270263671875	2	495.270435	988.526318	0.52317	0.00025911	-1.2423	-0.0006153	-0.71918	-0.00035619	495.2697217984678	77.818	1.3663	77.607	77.206	78.572	-0.21087					68	32	3	0	0	0	0.016871	2	9580	9571;9580		152.47	31.85	1	6760600			27118	7843	18666	18704	31334;31335	31335					0.031595784770274804
IMDATNILV	9	Unmodified	_IMDATNILV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2704162597656	2	495.270435	988.526318	-0.23262	-0.00011521	-0.59005	-0.00029224	-0.82267	-0.00040744	495.2700895310589	77.662	1.3287	77.678	77.32	78.649	0.015907					66	31	3	0	0	0	0.033448	1	9504	9504		138.83	5.3564	1	6725200			27119	7843	18666	18704	31336	31336					0.031595784770274804
IMDATNILV	9	Unmodified	_IMDATNILV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2706298828125	2	495.270435	988.526318	-0.32766	-0.00016228	-0.21336	-0.00010567	-0.54102	-0.00026795	495.27021535216016	77.852	2.2446	77.59	77.27	79.514	-0.26202					106	52	3	0	0	0	0.014034	2	9260	9260;9272		166.68	36.996	1	6496300			27120	7843	18666	18704	31337;31338	31337					0.031595784770274804
IMDATNILV	9	Unmodified	_IMDATNILV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.27099609375	2	495.270435	988.526318	0.75773	0.00037528	-1.2254	-0.00060691	-0.46768	-0.00023163	495.2697298626049	77.876	2.0704	77.634	77.276	79.346	-0.24232					95	48	3	0	0	0	0.12602	1	9263	9263		104.75	5.3716	1	6524500			27121	7843	18666	18704	31339	31339					0.031595784770274804
IMDATNILV	9	Unmodified	_IMDATNILV_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.27032470703125	2	495.270435	988.526318	-0.21539	-0.00010668	-0.4642	-0.0002299	-0.67959	-0.00033658	495.2700928926052	77.794	2.6699	77.632	77.268	79.938	-0.16196					109	62	3	0	0	0	0.013094	4	9266	9244;9254;9266;9278		171.38	37.339	1	6340800			27122	7843	18666	18704	31340;31341;31342;31343	31342					0.031595784770274804
IMDLNKDGSI	10	Unmodified	_IMDLNKDGSI_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.8300170898438	2	553.281531	1104.54851	-0.12093	-6.6907E-05	-0.94264	-0.00052155	-1.0636	-0.00058846	553.7801799340616	87.047	0.41721	87.012	86.776	87.194	-0.035355					20	9	4	0	0	0	0.03519	1	10891	10891		44.377	12.743	1	65908			27123	1823	18667	18705	31344	31344					0.000417581547935697
IMDRILQIA	9	Oxidation (M)	_IM(Oxidation (M))DRILQIA_		IM(1)DRILQIA		IM(96)DRILQIA	0	0	1		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.791015625	2	544.810259	1087.60597	-0.081392	-4.4343E-05	-2.6553	-0.0014466	-2.7367	-0.001491	544.8082985510226	58.586	0.84234	58.586	58.266	59.108	0					48	22	4	0	0	0	0.020546	1	6728	6728		96.19	13.885	1	2508800			27124	5503	18668	18706	31345	31345		233			0.06566645151019657
IMDRILQIA	9	Oxidation (M)	_IM(Oxidation (M))DRILQIA_					0	0	1		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.810259	1087.60597	0.25459	0.0001387	-3.2187	-0.0017536	-2.9642	-0.0016149	544.808084655059	58.853	0.73047	58.666	58.311	59.042	-0.18705	0.05349	5.6192E-05	NaN	96.19	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2497300			27125	5503	18668	18706				233			0.06566645151019657
IMDSGELDFY	10	Unmodified	_IMDSGELDFY_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.7985229492188	2	595.257722	1188.50089	-0.23436	-0.0001395	0.29165	0.00017361	0.057288	3.4101E-05	595.2582018004605	79.564	0.67033	79.414	79.11	79.78	-0.15051					22	15	2	0	0	0	0.03519	1	9502	9502		49.442	21.559	1	247500			27126	2296	18669	18707	31346	31346					-0.08581940836052127
IMEHLREF	8	Unmodified	_IMEHLREF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.7717895507812	2	537.773677	1073.5328	-0.43585	-0.00023439	-2.7035	-0.0014539	-3.1393	-0.0016883	537.7720915210228	58.713	1.7235	58.525	57.785	59.508	-0.18795					129	42	4	0	0	0	0.6536	1	6395	6395		71.296	2.811	1	8266100			27127	9881	18670	18708	31347	31347					-0.0010248357161799504
IMEHLREFLLT	11	Unmodified	_IMEHLREFLLT_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7899169921875	3	467.923479	1400.74861	-0.18985	-8.8833E-05	3.4916	0.0016338	3.3017	0.0015449	467.92489066279455	26.815	1.0908	26.897	26.372	27.463	0.081291					70	27	5	0	0	0	0.02484	1	1362	1362		12.433	9.2215	1	928930			27128	9881	18671	18709	31348	31348					0.06426232822377642
IMETKRVEI	9	Unmodified	_IMETKRVEI_					0	0	0		ENST00000513585.5_1_5:112312534-112328375:+|nuORF;ENST00000504961.1_1_5:112312516-112319704:+|nuORF	ENST00000513585.5_1_5:112312534-112328375:+|nuORF	ENST00000513585.5_1_5:112312534-112328375:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8145141601562	2	559.815541	1117.61653	0.50737	0.00028404	0.18935	0.000106	0.69673	0.00039004	559.8152601891431	83.006	2.6173	82.825	82.679	85.296	-0.18079					113	61	3	0	0	0	0.29158	1	10026	10026		76.774	5.3962	1	597740			27129	15724	18672	18710	31349	31349					0.06242627805431766
IMEYDYPD	8	Unmodified	_IMEYDYPD_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.212783	1044.41101	0.40936	0.00021418	-3.6422	-0.0019056	-3.2328	-0.0016914	523.2124386275453	85.89	0.25878	85.752	85.66	85.919	-0.1374					9	5	2	0	0	0	0.027866	1	10418	10418		18.324	0	1	25323	+		27130	27671	18673	18711	31350	31350					-0.10941570444629178
IMFGILFFVI	10	Oxidation (M)	_IM(Oxidation (M))FGILFFVI_		IM(1)FGILFFVI		IM(48)FGILFFVI	0	0	1			REV__ENSG00000072274|ENST00000360110|TFRC	REV__ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	405.8999938964844	3	405.899723	1214.67734	0.6286	0.00025515	-0.55332	-0.00022459	0.075279	3.0556E-05	405.89943667541786	23.764	0.9944	23.562	23.195	24.19	-0.20193					64	22	4	0	0	0	0.98754	1	1003	1003		47.657	8.4045	1	1125800	+		27131	20468	18674	18712	31351	31351		628			0.07858764855677691
IMFMDTFT	8	Unmodified	_IMFMDTFT_					0	0	0			REV__ENST00000521972.1_1_8:59496667-59498469:-|nuORF	REV__ENST00000521972.1_1_8:59496667-59498469:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2786560058594	2	503.224639	1004.43473	0.15854	7.9782E-05	-3.1563	-0.0015883	-2.9978	-0.0015086	503.22302830221406	79.942	0.37999	79.723	79.535	79.915	-0.21923					11	8	2	0	0	0	0.027866	1	9576	9576		37.028	1.8278	1	63727	+		27132	34330	18675	18713	31352	31352					-0.06731428211799084
IMFMGSGLIW	10	Unmodified	_IMFMGSGLIW_					0	0	0		nc|ENSG00000124532|Q9HD23-2|MRS2;ENSG00000124532|ENST00000378386|MRS2;nc|ENSG00000124532|Q9HD23-4|MRS2	nc|ENSG00000124532|Q9HD23-2|MRS2	nc|ENSG00000124532|Q9HD23-2|MRS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7694091796875	2	577.790481	1153.56641	-2.4891	-0.0014382	1.3012	0.00075184	-1.1879	-0.00068637	577.7921284582911	52.011	0.13975	51.742	51.62	51.76	-0.26903					5	3	2	0	0	0	0.03519	1	5357	5357		63.306	0	1	110560			27133	4056	18676	18714	31353	31353					-0.0042319812405366974
IMFMLPIF	8	Unmodified	_IMFMLPIF_					0	0	0			REV__ENSG00000112486|ENST00000341935|CCR6	REV__ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.27239990234375	2	506.273935	1010.53332	-1.1221	-0.0005681	1.6379	0.00082925	0.51583	0.00026115	506.2745202563126	35.303	0.95132	35.282	34.866	35.817	-0.021763					36	24	3	0	0	0	0.027866	1	2751	2751		24.504	2.8017	1	90014	+		27134	22006	18677	18715	31354	31354					0.02847219823888736
IMGAMILYTAV	11	Unmodified	_IMGAMILYTAV_					0	0	0			REV__ENSG00000180245|ENST00000317735|RRH	REV__ENSG00000180245|ENST00000317735|RRH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	591.819580078125	2	591.816696	1181.61884	-0.48883	-0.0002893	4.1256	0.0024416	3.6367	0.0021523	591.8190449719457	80.683	0.93159	80.446	80.123	81.055	-0.23783					51	22	3	0	0	0	0.98904	1	9658	9658		39.253	4.0521	1	859340	+		27135	27322	18678	18716	31355	31355					0.03529340218892685
IMGQPINPQ	9	Unmodified	_IMGQPINPQ_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2889099121094	2	499.260402	996.506251	-0.058469	-2.9191E-05	-2.9913	-0.0014934	-3.0497	-0.0015226	499.2585484292973	49.891	1.4187	49.74	48.901	50.32	-0.1512					110	39	4	0	0	0	0.024427	1	5072	5072		42.396	23.293	1	774730			27136	5962	18679	18717	31356	31356					0.007858275370722367
IMHEIMYKL	9	Unmodified	_IMHEIMYKL_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.330322265625	2	589.309038	1176.60352	-1.1996	-0.00070695	2.2188	0.0013076	1.0192	0.00060061	589.3098093149016	42.004	0.45981	41.773	41.546	42.006	-0.23186					21	12	2	0	0	0	0.024517	1	3715	3715		35.201	17.836	1	91656			27137	2270	18680	18718	31357	31357					0.022284734217009827
IMHLMFAF	8	Unmodified	_IMHLMFAF_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.78961181640625	2	505.253534	1008.49252	-1.0659	-0.00053856	-4.1537	-0.0020987	-5.2197	-0.0026372	505.2513013160145	46.491	0.78767	46.339	45.989	46.777	-0.15213					48	21	3	0	0	0	0.027866	1	4646	4646		43.626	10.814	1	1120800	+		27138	26571	18681	18719	31358	31358					-0.011391214957257034
IMHLMFAF	8	Unmodified	_IMHLMFAF_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.253534	1008.49252	-0.083794	-4.2337E-05	-5.18	-0.0026172	-5.2638	-0.0026596	505.250791449039	46.339	0.76473	46.39	46.031	46.796	0.051395	0.016914	-0.00034058	NaN	43.626	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1137700	+		27139	26571	18681	18719							-0.011391214957257034
IMHYNVVEQL	10	Unmodified	_IMHYNVVEQL_					0	0	0			REV__ENST00000472541.5_1_1:1235057-1244982:-|nuORF	REV__ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2319030761719	3	415.881391	1244.62234	-0.021949	-9.1283E-06	2.1295	0.00088564	2.1076	0.00087651	416.216628675247	39.843	0.22474	39.612	39.546	39.771	-0.2302					6	5	2	0	0	0	0.03519	1	3395	3395		56.434	4.906	1	40888	+		27140	23221	18682	18720	31359	31359					0.009817263171044033
IMIALPSPSM	10	2 Oxidation (M)	_IM(Oxidation (M))IALPSPSM(Oxidation (M))_		IM(1)IALPSPSM(1)		IM(79)IALPSPSM(79)	0	0	2		ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.275634765625	2	546.277403	1090.54025	-0.81344	-0.00044436	-0.95178	-0.00051993	-1.7652	-0.0009643	546.2758461432859	73.501	2.9632	73.23	72.557	75.52	-0.27126					127	74	4	0	0	0	0.57825	1	8899	8899		79.451	15.917	1	23352000			27141	3415	18683	18721	31360	31360		129;130			-0.0013951208618436794
IMIGACLKL	9	Unmodified	_IMIGACLKL_					0	0	0			REV__ENST00000515668.5_1_4:37841281-37847299:+|nuORF	REV__ENST00000515668.5_1_4:37841281-37847299:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.2828369140625	2	481.282292	960.55003	-2.0298	-0.00097689	2.0241	0.00097418	-0.0056145	-2.7022E-06	481.28311661657835	51.967	1.0715	51.698	51.361	52.432	-0.26903					68	28	4	0	0	0	0.33184	1	5365	5365		71.378	8.3995	1	3316400	+		27142	26350	18684	18722	31361	31361					0.06817720709841524
IMIGKHLK	8	Unmodified	_IMIGKHLK_					0	0	0		ENST00000264350.7_1_4:89425525-89425691:+|nuORF	ENST00000264350.7_1_4:89425525-89425691:+|nuORF	ENST00000264350.7_1_4:89425525-89425691:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.78289794921875	2	470.294048	938.573543	0.89278	0.00041987	0.092587	4.3543E-05	0.98537	0.00046341	470.2942046179854	18.592	0.49512	18.436	18.148	18.643	-0.15637					16	9	3	0	0	0	0.027866	1	288	288		19.36	6.4008	1	32376			27143	11560	18685	18723	31362	31362					0.10179902538675378
IMIIKKFH	8	Unmodified	_IMIIKKFH_					0	0	0			REV__ENST00000459834.5_1_7:56079457-56101834:-|nuORF	REV__ENST00000459834.5_1_7:56079457-56101834:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2877197265625	2	515.317523	1028.62049	-0.13568	-6.9917E-05	1.0901	0.00056173	0.95439	0.00049181	515.3179517960701	34.285	0.73595	34.061	33.522	34.258	-0.22412					31	18	3	0	0	0	0.027866	1	2543	2543		42.474	0	1	271260	+		27144	24508	18686	18724	31363	31363					0.10732762089833159
IMKAMTSGY	9	Unmodified	_IMKAMTSGY_					0	0	0		ENSG00000112941|ENST00000230859|TENT4A;ENST00000514697.1_1_5:6746314-6755055:+|nuORF;nc|ENSG00000112941|Q5XG87-2|TENT4A	ENSG00000112941|ENST00000230859|TENT4A	ENSG00000112941|ENST00000230859|TENT4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30279541015625	2	501.243363	1000.47217	-0.25894	-0.00012979	2.0095	0.0010073	1.7506	0.00087748	501.24424016685026	24.828	0.25708	24.613	24.463	24.72	-0.2151					7	5	2	0	0	0	0.024487	1	1138	1138		17.365	0	1	32186			27145	3251	18687	18725	31364	31364					-0.02804336946201147
IMKAVEVKT	9	Unmodified	_IMKAVEVKT_					0	0	0			REV__ENST00000466374.1_1_22:38453534-38463917:+|nuORF;REV__nc|ENSG00000100151|Q9NRD5-2|PICK1	REV__ENST00000466374.1_1_22:38453534-38463917:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7752380371094	2	509.801903	1017.58925	-0.46771	-0.00023844	1.0158	0.00051784	0.54805	0.0002794	509.8024615488765	44.529	0.30548	44.566	44.375	44.681	0.0369					14	8	2	0	0	0	0.024484	1	4178	4178		30.318	3.5216	1	85159	+		27146	33036;21056	18688	18726	31365	31365					0.08116144265068215
IMKEKENLK	9	Unmodified	_IMKEKENLK_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.8104858398438	2	566.823366	1131.63218	0.36994	0.00020969	-1.4605	-0.00082784	-1.0906	-0.00061815	567.3242667580937	69.693	0.15567	69.4	69.312	69.467	-0.29292					5	3	2	0	0	0	0.023061	1	8359	8359		90.37	18.492	1	66852	+		27147	19377	18689	18727	31366	31366					0.07162914322475444
IMKKKKKV	8	Unmodified	_IMKKKKKV_					0	0	0		ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.80072021484375	2	501.846448	1001.67834	-1.0229	-0.00051333	0.89008	0.00044668	-0.1328	-6.6647E-05	501.84601036359396	46.511	0.27107	46.358	46.208	46.479	-0.15301					12	7	2	0	0	0	0.027866	1	4558	4558		26.796	7.4361	1	117140			27148	9406	18690	18728	31367	31367					0.1775702401524768
IMKPNKTIE	9	Unmodified	_IMKPNKTIE_					0	0	0		ENST00000482384.1_1_1:109757484-109757604:+|nuORF	ENST00000482384.1_1_1:109757484-109757604:+|nuORF	ENST00000482384.1_1_1:109757484-109757604:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.30712890625	2	537.30481	1072.59507	-0.6691	-0.00035951	-0.015484	-8.3196E-06	-0.68459	-0.00036783	537.3049864340845	68.539	2.085	68.539	67.908	69.993	0					159	53	5	0	0	0	0.14024	1	8174	8174		101.6	5.4103	1	46819000			27149	15255	18691	18729	31368	31368					0.061672427767234694
IMKQQSQL	8	Unmodified	_IMKQQSQL_					0	0	0		nc|ENSG00000285053|Q15813-2|TBCE;nc|ENSG00000285053|Q15813|TBCE	nc|ENSG00000285053|Q15813-2|TBCE	nc|ENSG00000285053|Q15813-2|TBCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2679748535156	2	488.268227	974.521901	-0.46625	-0.00022766	0.55009	0.00026859	0.083835	4.0934E-05	488.2683332135386	46.547	1.0028	46.599	46.096	47.099	0.051395					62	27	3	0	0	0	0.33369	1	4550	4550		106.42	7.0402	1	3016100			27150	18813	18692	18730	31369	31369					0.03362114054118592
IMKRLMEG	8	Oxidation (M)	_IMKRLM(Oxidation (M))EG_		IMKRLM(1)EG		IM(-71)KRLM(71)EG	0	0	1			REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2623596191406	2	497.26463	992.514707	-0.60669	-0.00030169	-3.0503	-0.0015168	-3.657	-0.0018185	497.2629896396473	48.345	6.1114	48.248	45.849	51.96	-0.097553					376	164	4	0	0	0	0.44658	4	4840	4741;4840;4852;4909		90.777	21.99	2	6694800	+		27151	35042	18693	18731	31370;31371;31372;31373	31371		949			0.01815058182046414
IMKRLMEG	8	Oxidation (M)	_IMKRLM(Oxidation (M))EG_		IMKRLM(1)EG		IM(-57)KRLM(57)EG	0	0	1			REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2626037597656	2	497.26463	992.514707	-0.59944	-0.00029808	-3.072	-0.0015276	-3.6714	-0.0018257	497.26295675594787	48.648	6.2116	48.373	45.762	51.974	-0.27598					392	167	4	0	0	0	0.53523	4	4846	4787;4846;4869;4881		82.305	11.009	2	7013000	+		27152	35042	18693	18731	31374;31375;31376;31377	31375		949			0.01815058182046414
IMKRLMEG	8	Oxidation (M)	_IMKRLM(Oxidation (M))EG_		IMKRLM(1)EG		IM(-64)KRLM(64)EG	0	0	1			REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.26251220703125	2	497.26463	992.514707	-0.17985	-8.9431E-05	-3.6835	-0.0018317	-3.8634	-0.0019211	497.26276530146424	48.49	5.7611	48.308	45.839	51.6	-0.18206					294	155	2	0	0	0	0.44658	2	4908	4769;4908		90.777	13.93	2	7142700	+		27153	35042	18693	18731	31378;31379	31379		949			0.01815058182046414
IMKRLMEG	8	Oxidation (M)	_IMKRLM(Oxidation (M))EG_		IMKRLM(1)EG		IM(-69)KRLM(69)EG	0	0	1			REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	REV__ENST00000556611.5_1_14:32546233-32559780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.26251220703125	2	497.26463	992.514707	-1.2848	-0.00063888	-2.5487	-0.0012674	-3.8335	-0.0019063	497.2632221713858	55.94	1.6637	55.725	54.967	56.631	-0.21551					91	44	3	0	0	0	0.53523	1	6033	6033		82.305	8.3303	2	3439000	+		27154	35042	18693	18731	31380	31380		949			0.01815058182046414
IMKVKNEKL	9	Unmodified	_IMKVKNEKL_					0	0	0		ENSG00000147408|ENST00000692225|CSGALNACT1;nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1;ENST00000518542.1_1_8:19315287-19352580:-|nuORF	ENSG00000147408|ENST00000692225|CSGALNACT1	ENSG00000147408|ENST00000692225|CSGALNACT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8351440429688	2	551.836277	1101.658	-0.54571	-0.00030114	-3.2566	-0.0017971	-3.8023	-0.0020983	551.8343942682029	66.337	0.53954	66.055	65.711	66.251	-0.28149					45	13	4	0	0	0	0.17822	1	7857	7857		93.195	2.5946	1	3042800			27155	5961	18694	18732	31381	31381					0.11123808564775572
IMKVKSDGSH	10	Unmodified	_IMKVKSDGSH_					0	0	0		nc|ENSG00000211672|A0A075B6K6|IGLV4-3	nc|ENSG00000211672|A0A075B6K6|IGLV4-3	nc|ENSG00000211672|A0A075B6K6|IGLV4-3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.2890625	2	551.289691	1100.56483	-0.62713	-0.00034573	0.021929	1.2089E-05	-0.60521	-0.00033364	551.2896496202643	48.068	2.6246	48.068	47.181	49.805	0					131	75	3	0	0	0	0.57594	1	4877	4877		79.713	0.26157	1	3762300			27156	18687	18695	18733	31382	31382					0.018568841115438772
IMLALAKGN	9	Unmodified	_IMLALAKGN_					0	0	0			REV__nc|ENSG00000285467|P0CG22|DHRS4L1	REV__nc|ENSG00000285467|P0CG22|DHRS4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7772216796875	2	465.775688	929.536823	-0.18378	-8.5601E-05	3.4358	0.0016003	3.252	0.0015147	465.7770589296706	81.53	4.4485	81.399	79.15	83.599	-0.13075					270	106	3	0	0	0	0.78069	1	10110	10110		40.573	4.9543	1	1253000	+		27157	37217	18696	18734	31383	31383					0.06923605922111165
IMLAPLFVT	9	Unmodified	_IMLAPLFVT_					0	0	0			REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7580261230469	2	502.796089	1003.57763	1.2692	0.00063816	1.7765	0.00089322	3.0457	0.0015314	502.7966645694066	37.035	0.38655	37.035	36.846	37.233	0					19	9	3	0	0	0	0.023954	1	3015	3015		62.978	29.463	1	218470	+		27158	33564	18697	18735	31384	31384					0.07597947241731617
IMLAPLFVT	9	Unmodified	_IMLAPLFVT_					0	0	0			REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7580871582031	2	502.796089	1003.57763	0.020011	1.0061E-05	3.1283	0.0015729	3.1483	0.001583	502.797392780709	36.891	0.42385	36.827	36.628	37.052	-0.063389					22	10	3	0	0	0	0.023954	1	2969	2969		52.299	0	1	175340	+		27159	33564	18697	18735	31385	31385					0.07597947241731617
IMLAPLFVT	9	Unmodified	_IMLAPLFVT_					0	0	0			REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	REV__ENST00000485620.1_1_7:6851426-6854399:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7578430175781	2	502.796089	1003.57763	-0.073762	-3.7087E-05	3.535	0.0017774	3.4612	0.0017403	502.7975381686825	37.041	0.46759	37.073	36.797	37.264	0.032269					22	11	3	0	0	0	0.024183	1	2952	2952		71.378	1.7503	1	209450	+		27160	33564	18697	18735	31386	31386					0.07597947241731617
IMLDENLKP	9	Unmodified	_IMLDENLKP_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3049926757812	2	536.788992	1071.56343	-0.46091	-0.00024741	-1.0827	-0.00058116	-1.5436	-0.00082857	536.7883753598626	73.301	0.55292	73.03	72.76	73.313	-0.27126					24	13	2	0	0	0	0.024313	1	8867	8867		60.118	1.8883	1	604410			27161	4947;14787	18698	18736	31387	31387					0.0305125002278146
IMLDENLKP	9	Unmodified	_IMLDENLKP_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.788992	1071.56343	-0.83378	-0.00044756	-0.34132	-0.00018322	-1.1751	-0.00063078	536.7888072923681	72.931	0.56242	72.931	72.656	73.219	0	-0.049582	0.00039605	NaN	60.118	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530060			27162	4947;14787	18698	18736							0.0305125002278146
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(110)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.302001953125	2	545.302267	1088.58998	-0.73037	-0.00039827	-0.25125	-0.00013701	-0.98162	-0.00053528	545.3021987952355	63.12	1.2968	63.12	62.729	64.026	0					110	34	4	0	0	0	0.11727	2	7355	7355;7379		106.68	21.522	1	24837000			27163	5707	18699	18737	31388;31389	31388		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(130)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3020629882812	2	545.302267	1088.58998	-0.66641	-0.00036339	-0.25048	-0.00013659	-0.91689	-0.00049998	545.30223970613	63.426	1.5214	63.175	62.683	64.204	-0.25141					112	34	4	0	0	0	0.048057	1	7367	7367		129.42	33.231	1	22862000			27164	5707	18699	18737	31390	31390		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(78)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3005981445312	2	545.302267	1088.58998	-1.6826	-0.00091751	0.2883	0.00015721	-1.3943	-0.0007603	545.3021826548577	64.845	2.4406	64.582	63.791	66.231	-0.2626					137	65	3	0	0	0	0.28047	1	7557	7557		78.264	6.9681	1	9859300			27165	5707	18699	18737	31391	31391		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(99)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.30224609375	2	545.302267	1088.58998	0.46477	0.00025344	-1.4784	-0.00080616	-1.0136	-0.00055272	545.3015511392318	63.271	1.4733	63.325	62.76	64.233	0.054104					111	34	4	0	0	0	0.15388	2	7291	7253;7291		98.582	18.723	1	22677000			27166	5707	18699	18737	31392;31393	31393		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(110)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.302490234375	2	545.302267	1088.58998	-0.29275	-0.00015964	-0.89705	-0.00048917	-1.1898	-0.0006488	545.3021046016803	63.548	1.0141	63.32	62.81	63.825	-0.22773					93	25	4	0	0	0	0.11727	2	7144	7144;7156		106.68	24.443	1	4406400			27167	5707	18699	18737	31394;31395	31394		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(96)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.302001953125	2	545.302267	1088.58998	-0.69044	-0.0003765	0.5537	0.00030194	-0.13674	-7.4563E-05	545.3019049190881	64.8	1.7306	64.565	63.733	65.464	-0.2345					111	42	3	0	0	0	0.16539	4	7382	7382;7394;7407;7418		96.034	28.051	1	4303200			27168	5707	18699	18737	31396;31397;31398;31399	31396		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(88)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3009643554688	2	545.302267	1088.58998	-1.1241	-0.00061297	0.44233	0.00024121	-0.68176	-0.00037176	545.3023254796452	68.921	1.9004	68.66	68.063	69.963	-0.26166					84	45	3	0	0	0	0.20652	1	7988	7988		88.177	13.134	1	2447000			27169	5707	18699	18737	31400	31400		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(120)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3026123046875	2	545.302267	1088.58998	-0.30193	-0.00016465	-0.99532	-0.00054275	-1.2973	-0.0007074	545.3020364969432	63.555	1.1416	63.362	62.779	63.921	-0.19243					102	28	4	0	0	0	0.079716	5	7159	7135;7147;7159;7183;7194		117.81	32.5	1	4706400			27170	5707	18699	18737	31401;31402;31403;31404;31405	31403		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(110)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3024291992188	2	545.302267	1088.58998	-0.81793	-0.00044602	0.51379	0.00028017	-0.30414	-0.00016585	545.3020464979942	64.76	1.5189	64.558	63.829	65.348	-0.20254					100	37	3	0	0	0	0.11727	3	7411	7386;7398;7411		106.68	35.387	1	4831000			27171	5707	18699	18737	31406;31407;31408	31408		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(110)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3029174804688	2	545.302267	1088.58998	-0.13959	-7.6119E-05	-1.101	-0.00060038	-1.2406	-0.0006765	545.3019655417088	63.586	1.2359	63.327	62.876	64.112	-0.25824					96	31	4	0	0	0	0.11727	3	7151	7140;7151;7182		106.68	31.64	1	5277100			27172	5707	18699	18737	31409;31410;31411	31410		243			0.04922938914091901
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(86)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3023071289062	2	545.302267	1088.58998	-1.004	-0.00054747	0.55669	0.00030356	-0.44729	-0.00024391	545.3021012845577	64.761	1.5123	64.506	63.795	65.307	-0.25563					95	37	3	0	0	0	0.22379	2	7402	7378;7402		85.862	22.556	1	4950000			27173	5707	18699	18737	31412;31413	31413		243			0.04922938914091901
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.30517578125	2	537.30481	1072.59507	-0.6691	-0.00035951	-0.015484	-8.3196E-06	-0.68459	-0.00036783	537.3049864340845	68.539	2.085	68.539	67.908	69.993	0					159	53	5	0	0	0	0.016542	8	8206	8197;8206;8218;8230;8242;8254;8270;8281		154.12	53.172	1	46819000			27174	5707	18699	18738	31414;31415;31416;31417;31418;31419;31420;31421	31415					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.3042602539062	2	537.30481	1072.59507	-0.25804	-0.00013865	-0.36316	-0.00019513	-0.6212	-0.00033377	537.304781131683	68.907	2.0253	68.615	68.013	70.038	-0.29267					156	51	5	0	0	0	0.013924	10	8249	8215;8225;8237;8249;8261;8275;8287;8297;8319;8331		167.23	53.817	1	44373000			27175	5707	18699	18738	31422;31423;31424;31425;31426;31427;31428;31429;31430;31431	31425					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3051147460938	2	537.30481	1072.59507	-0.52235	-0.00028066	-0.089171	-4.7912E-05	-0.61152	-0.00032857	537.3049555763375	68.628	1.9959	68.646	68.042	70.038	0.018913					159	51	5	0	0	0	0.020687	8	8177	8130;8141;8153;8165;8177;8192;8204;8217		148.99	38.919	1	44073000			27176	5707	18699	18738	31432;31433;31434;31435;31436;31437;31438;31439	31436					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.3046875	2	537.30481	1072.59507	-1.1735	-0.0006305	0.64494	0.00034653	-0.52851	-0.00028397	537.3050991591949	68.868	2.0231	68.607	68.142	70.165	-0.26165					111	48	4	0	0	0	0.016542	6	7971	7950;7960;7971;7983;7995;8007		154.12	40.707	1	15661000			27177	5707	18699	18738	31440;31441;31442;31443;31444;31445	31442					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.3043823242188	2	537.30481	1072.59507	-0.046981	-2.5243E-05	-0.57107	-0.00030684	-0.61805	-0.00033208	537.3044569496634	68.811	2.0022	68.568	68.187	70.19	-0.24278					124	48	5	0	0	0	0.016542	6	7972	7949;7960;7972;7984;7996;8009		154.12	45.898	1	18031000			27178	5707	18699	18738	31446;31447;31448;31449;31450;31451	31448					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.3038940429688	2	537.30481	1072.59507	-0.53911	-0.00028967	-0.024908	-1.3383E-05	-0.56402	-0.00030305	537.3047255833035	68.771	2.0019	68.54	68.156	70.157	-0.23048					117	48	4	0	0	0	0.013924	6	7954	7933;7943;7954;7966;7978;7991		167.23	71.414	1	18403000			27179	5707	18699	18738	31452;31453;31454;31455;31456;31457	31454					0.06167242776700732
IMLFVVFLV	9	Unmodified	_IMLFVVFLV_					0	0	0			REV__OR5J2|p.V33M|1|0.18|ENSG00000174957|chr11:56176714-56176714|G/A|missense_variant	REV__OR5J2|p.V33M|1|0.18|ENSG00000174957|chr11:56176714-56176714|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8102416992188	2	540.829932	1079.64531	-0.66693	-0.00036069	2.7975	0.0015129	2.1305	0.0011523	541.3340373859861	107.17	0.36247	107.18	107.06	107.43	0.0018311					12	9	2	0	0	0	0.024475	1	13678	13678		21.702	1.2205	1	36380	+		27180	37322	18700	18739	31458	31458					0.10867397172523852
IMLGIFGF	8	Unmodified	_IMLGIFGF_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2389221191406	2	449.248775	896.482997	-0.6585	-0.00029583	1.3776	0.0006189	0.71913	0.00032307	449.2485765024696	23.939	0.82545	23.892	23.528	24.353	-0.047148					41	18	4	0	0	0	0.027866	1	985	985		33.493	8.989	1	122530	+		27181	24952	18701	18740	31459	31459					0.03061433490404397
IMLGKRIGFYR	11	Unmodified	_IMLGKRIGFYR_					0	0	0		NIM1K|p.T66M|1|0.13|ENSG00000177453|chr5:43245972-43245972|C/T|missense_variant	NIM1K|p.T66M|1|0.13|ENSG00000177453|chr5:43245972-43245972|C/T|missense_variant	NIM1K|p.T66M|1|0.13|ENSG00000177453|chr5:43245972-43245972|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.9328308105469	3	451.932309	1352.7751	0.40681	0.00018385	0.41252	0.00018643	0.81932	0.00037028	451.93241469583455	98.661	2.0539	98.671	97.815	99.869	0.010239					182	47	5	0	0	0	1.0371	1	12703	12703		28.577	2.5133	1	1634100			27182	18871	18702	18741	31460	31460					0.112819665043844
IMLILSGLAS	10	Unmodified	_IMLILSGLAS_					0	0	0			REV__ENST00000553022.1_1_12:50146843-50152319:+|nuORF	REV__ENST00000553022.1_1_12:50146843-50152319:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3062744140625	2	509.304278	1016.594	-0.44141	-0.00022481	4.0028	0.0020386	3.5614	0.0018138	509.30622347701615	91.862	1.4922	91.853	91.451	92.944	-0.0082932					106	35	5	0	0	0	1.1267	1	11614	11614		29.15	0	1	3607500	+		27183	23955	18703	18742	31461	31461					0.08637028407827074
IMLKEKLLQE	10	Unmodified	_IMLKEKLLQE_					0	0	0			REV__ENSG00000138587|ENST00000260453|MNS1	REV__ENSG00000138587|ENST00000260453|MNS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.8660278320312	2	622.867774	1243.72099	-0.6532	-0.00040686	-2.0382	-0.0012695	-2.6914	-0.0016764	622.8664447649837	80.635	1.1874	80.483	80.049	81.237	-0.15168					81	28	4	0	0	0	0.6365	1	10012	10012		72.879	11.115	1	2105000	+		27184	23862	18704	18743	31462	31462					0.10888329562180843
IMLSAIPEAM	10	Oxidation (M)	_IM(Oxidation (M))LSAIPEAM_		IM(1)LSAIPEAM		IM(78)LSAIPEAM(-78)	0	0	1			REV__nc|ENSG00000019485|Q9NQV5|PRDM11	REV__nc|ENSG00000019485|Q9NQV5|PRDM11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2753295898438	2	546.277403	1090.54025	-0.20048	-0.00010952	-2.799	-0.001529	-2.9995	-0.0016385	546.2758396528365	77.703	4.0541	77.441	77.06	81.114	-0.26202					197	96	3	0	0	0	0.44576	1	9238	9238		94.006	8.6469	2	1638500	+		27185	36439	18705	18744	31463	31463		964			-0.0013951208620710531
IMLTWKGL	8	Unmodified	_IMLTWKGL_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.283203125	2	481.280606	960.546659	0.86517	0.00041639	2.6862	0.0012928	3.5513	0.0017092	481.28176877309755	51.789	1.0556	51.605	51.298	52.354	-0.18405					63	27	4	0	0	0	0.74904	1	5340	5340		63.306	0.32785	1	2977200	+		27186	21800	18706	18745	31464	31464					0.06480793927505601
IMLVGASAGAR	11	Unmodified	_IMLVGASAGAR_					0	0	0			REV__ENSG00000204659|ENST00000376974|CBY3	REV__ENSG00000204659|ENST00000376974|CBY3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2888793945312	2	523.294776	1044.575	-0.0068924	-3.6068E-06	1.6529	0.00086496	1.646	0.00086136	523.2944380769846	51.642	1.3975	51.523	51.082	52.48	-0.11875					88	36	4	0	0	0	0.32544	1	5294	5294		87.696	5.4559	1	6381100	+		27187	28629	18707	18746	31465	31465					0.05449491836770903
IMMKKVKK	8	Unmodified	_IMMKKVKK_					0	0	0		ENST00000552147.5_3_12:76442186-76444321:-|nuORF;ENST00000552056.5_1_12:76441358-76444342:-|nuORF	ENST00000552147.5_3_12:76442186-76444321:-|nuORF	ENST00000552147.5_3_12:76442186-76444321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.3182373046875	2	503.319208	1004.62386	-0.37229	-0.00018738	-3.1956	-0.0016084	-3.5679	-0.0017958	503.3174462501581	52.596	0.95196	52.406	52.067	53.019	-0.18981					50	23	3	0	0	0	1.0239	1	5454	5454		33.516	3.0119	1	2745900			27188	16614	18708	18747	31466	31466					0.12173688872178445
IMNPLLAKT	9	Unmodified	_IMNPLLAKT_					0	0	0			REV__ENSG00000184544|ENST00000571134|DHRS7C	REV__ENSG00000184544|ENST00000571134|DHRS7C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7785339355469	2	500.79662	999.578688	1.5054	0.00075391	-0.37207	-0.00018633	1.1334	0.00056758	500.79446961927584	63.702	0.43116	63.702	63.631	64.062	0					17	11	2	0	0	0	0.024397	1	7505	7505		39.253	0	1	104160	+		27189	27679	18709	18748	31467	31467					0.07888161610628686
IMNTIDMYN	9	Unmodified	_IMNTIDMYN_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.8338623046875	2	557.74901	1113.48347	-0.3282	-0.00018305	0.29629	0.00016526	-0.031907	-1.7796E-05	557.7489385743211	64.262	0.90797	64.035	63.512	64.42	-0.22773					50	22	3	0	0	0	0.024263	1	7282	7282		71.296	28.9	1	618690			27190	7430	18710	18749	31468	31468					-0.0687355964271319
IMNTIDMYN	9	Unmodified	_IMNTIDMYN_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.74901	1113.48347	-0.30251	-0.00016872	-0.021392	-1.1932E-05	-0.3239	-0.00018065	557.7489268382191	64.133	1.0913	63.882	63.336	64.428	-0.2514	-0.10591	0.00071005	NaN	66.429	39	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328840			27191	7430	18710	18749							-0.0687355964271319
IMNTIDMYN	9	Unmodified	_IMNTIDMYN_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.74901	1113.48347	1.8428	0.0010278	-2.4713	-0.0013784	-0.6285	-0.00035055	557.7475165795643	63.888	0.50049	63.934	63.688	64.189	0.045502	-0.053773	-0.0020229	NaN	66.429	26	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374400			27192	7430	18710	18749							-0.0687355964271319
IMNTTDENFPL	11	Unmodified	_IMNTTDENFPL_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.7206726074219	3	432.204311	1293.5911	-0.15062	-6.5097E-05	3.5509	0.0015347	3.4003	0.0014696	432.20587922271534	30.948	0.54465	30.707	30.41	30.954	-0.24109					17	12	2	0	0	0	0.024735	1	2004	2004		21.78	7.0868	1	31090	+		27193	20873	18711	18750	31469	31469					-0.04394891507649845
IMNWDANAL	9	Unmodified	_IMNWDANAL_					0	0	0			REV__ENSG00000172139|ENST00000305815|SLC9C1	REV__ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2520751953125	2	524.250034	1046.48552	-0.88442	-0.00046366	4.1943	0.0021989	3.3099	0.0017352	524.2521164030851	53.594	0.73386	53.458	53.134	53.867	-0.13617					50	21	3	0	0	0	0.56934	1	5642	5642		54.776	0.01164	1	4958800	+		27194	26636	18712	18751	31470	31470					-0.035867628426331066
IMPLLCYGL	9	Carbamidomethyl (C)	_IMPLLC(Carbamidomethyl (C))YGL_	IMPLLC(1)YGL		IMPLLC(73)YGL		0	1	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3320922851562	2	540.285031	1078.55551	-0.61408	-0.00033178	1.9898	0.001075	1.3757	0.00074327	540.2865713808824	67.719	0.67958	67.431	66.992	67.671	-0.28834					27	16	2	0	0	0	0.023092	1	8060	8060		72.62	11.648	1	467660	+		27195	24434	18713	18752	31471	31471	321				0.019373995016394474
IMPLLCYGL	9	Carbamidomethyl (C)	_IMPLLC(Carbamidomethyl (C))YGL_					0	1	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.285031	1078.55551	-0.23287	-0.00012582	-1.0978	-0.00059312	-1.3307	-0.00071894	540.2844421150068	67.774	0.70367	67.541	67.093	67.797	-0.23375	0.043467	-0.00018232	NaN	72.62	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382820	+		27196	24434	18713	18752			321				0.019373995016394474
IMPLLCYGL	9	Carbamidomethyl (C)	_IMPLLC(Carbamidomethyl (C))YGL_					0	1	0			REV__nc|ENSG00000145817|Q969M3-2|YIPF5	REV__nc|ENSG00000145817|Q969M3-2|YIPF5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.285031	1078.55551	-0.98722	-0.00053338	-0.42266	-0.00022836	-1.4099	-0.00076174	540.2848686456282	67.709	0.53763	67.471	67.289	67.827	-0.23814	-0.026358	0.0005472	NaN	72.62	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459910	+		27197	24434	18713	18752			321				0.019373995016394474
IMPLLKLSC	9	Oxidation (M)	_IM(Oxidation (M))PLLKLSC_		IM(1)PLLKLSC		IM(99)PLLKLSC	0	0	1		ENSG00000172150|ENST00000381951|OR1A2	ENSG00000172150|ENST00000381951|OR1A2	ENSG00000172150|ENST00000381951|OR1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2936401367188	2	517.292856	1032.57116	0.14637	7.5717E-05	0.052426	2.7119E-05	0.1988	0.00010284	517.2926652041988	69.93	0.78505	69.679	69.358	70.143	-0.25063					59	18	5	0	0	0	0.15029	1	8141	8141		99.375	31.881	1	1339000			27198	8245	18714	18753	31472	31472		342			0.05617686018695167
IMPLLKLSC	9	Oxidation (M)	_IM(Oxidation (M))PLLKLSC_					0	0	1		ENSG00000172150|ENST00000381951|OR1A2	ENSG00000172150|ENST00000381951|OR1A2	ENSG00000172150|ENST00000381951|OR1A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.292856	1032.57116	0.11471	5.9339E-05	-0.015812	-8.1797E-06	0.098897	5.1159E-05	517.2927000922683	69.878	0.70152	69.655	69.307	70.008	-0.22245	-0.026123	-0.00027168	NaN	99.375	51	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1443400			27199	8245	18714	18753				342			0.05617686018695167
IMQKKQHL	8	Unmodified	_IMQKKQHL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2990112304688	2	513.299862	1024.58517	-0.47622	-0.00024444	0.18887	9.6944E-05	-0.28735	-0.0001475	513.2997899750378	23.088	0.50552	22.903	22.646	23.152	-0.18514					27	10	4	0	0	0	0.56067	1	871	871		79.939	8.5613	1	515900			27200	2053	18715	18754	31473	31473					0.07386099561995252
IMQKKQHL	8	Unmodified	_IMQKKQHL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2988891601562	2	513.299862	1024.58517	1.3299	0.00068263	-1.7878	-0.0009177	-0.45795	-0.00023507	513.2988083738969	23.122	0.5957	22.931	22.572	23.167	-0.19117					29	12	3	0	0	0	0.65272	1	851	851		71.378	0	1	603780			27201	2053	18715	18754	31474	31474					0.07386099561995252
IMRHGGPL	8	Unmodified	_IMRHGGPL_					0	0	0		ENST00000561790.1_1_16:46660318-46660894:-|nuORF;ENSG00000172780|ENST00000315150|RAB43	ENST00000561790.1_1_16:46660318-46660894:-|nuORF	ENST00000561790.1_1_16:46660318-46660894:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.24346923828125	2	440.744722	879.474891	-0.73916	-0.00032578	1.8745	0.00082616	1.1353	0.00050037	440.74567723546886	25.058	0.77085	24.831	24.623	25.394	-0.22683					22	17	2	0	0	0	0.027866	1	1205	1205		20.482	0	1	103200			27202	8307	18716	18755	31475	31475					0.030332992936450864
IMRIEDDEA	9	Unmodified	_IMRIEDDEA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.258544921875	2	546.255514	1090.49647	-0.27245	-0.00014883	-0.27811	-0.00015192	-0.55057	-0.00030075	546.2553334712911	59.724	0.52011	59.476	59.09	59.61	-0.24842					29	12	3	0	0	0	0.45795	1	6602	6602		62.107	1.9892	1	1672700	+		27203	26001	18717	18756	31476	31476					-0.04515405258962346
IMRMEIGW	8	2 Oxidation (M)	_IM(Oxidation (M))RM(Oxidation (M))EIGW_		IM(1)RM(1)EIGW		IM(74)RM(74)EIGW	0	0	2		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2582397460938	2	534.254262	1066.49397	-0.3875	-0.00020702	-1.488	-0.00079497	-1.8755	-0.001002	534.2535825643607	106.5	0.83638	106.5	106.02	106.86	0.0018311					34	29	2	0	0	0	0.6248	1	13582	13582		73.975	17.254	1	278180			27204	1516	18718	18757	31477	31477		49;50			-0.0366153219761145
IMSLVSEEF	9	Unmodified	_IMSLVSEEF_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-6|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.8177490234375	2	527.759901	1053.50525	-0.036537	-1.9283E-05	0.10104	5.3325E-05	0.064503	3.4042E-05	527.7592428310999	80.67	0.57309	80.524	80.199	80.772	-0.146					42	13	4	0	0	0	0.024	1	9664	9664		45.952	0	1	413170			27205	4219	18719	18758	31478	31478					-0.019364316224937284
IMSNKVCYQ	9	Unmodified	_IMSNKVCYQ_					0	0	0		ENSG00000184954|ENST00000327335|OR6C70	ENSG00000184954|ENST00000327335|OR6C70	ENSG00000184954|ENST00000327335|OR6C70	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2636108398438	2	543.259545	1084.50454	-0.20267	-0.0001101	-2.1361	-0.0011604	-2.3387	-0.0012705	543.2579585001955	49.945	3.0701	49.665	48.575	51.645	-0.27977					162	81	4	0	0	0	0.024523	1	4945	4945		29.15	5.6269	1	1422100			27206	9386	18720	18759	31479	31479					-0.03433549543206027
IMSRLCLFL	9	Unmodified	_IMSRLCLFL_					0	0	0		ENST00000491655.1_1_2:55040403-55043927:+|nuORF	ENST00000491655.1_1_2:55040403-55043927:+|nuORF	ENST00000491655.1_1_2:55040403-55043927:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3107299804688	2	548.306298	1094.59804	-0.34826	-0.00019095	2.9216	0.0016019	2.5733	0.001411	548.30777302576	101.66	1.8008	101.65	101.06	102.86	-0.0054474					102	41	4	0	0	0	0.20967	1	12991	12991		87.754	18.967	1	3111100			27207	15465	18721	18760	31480	31480					0.05452794629877644
IMTDLYYL	8	Unmodified	_IMTDLYYL_					0	0	0		nc|ENSG00000033170|Q9BYC5-2|FUT8;ENSG00000033170|ENST00000673929|FUT8	nc|ENSG00000033170|Q9BYC5-2|FUT8	nc|ENSG00000033170|Q9BYC5-2|FUT8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2715454101562	2	516.259536	1030.50452	-0.31675	-0.00016352	1.2736	0.00065752	0.95688	0.000494	516.259772434382	49.416	0.57476	49.315	48.955	49.529	-0.1008					21	14	2	0	0	0	0.027866	1	4916	4916		54.765	8.8127	1	141590			27208	1022	18722	18761	31481	31481					-0.009512262715588804
IMTDLYYL	8	Unmodified	_IMTDLYYL_					0	0	0		nc|ENSG00000033170|Q9BYC5-2|FUT8;ENSG00000033170|ENST00000673929|FUT8	nc|ENSG00000033170|Q9BYC5-2|FUT8	nc|ENSG00000033170|Q9BYC5-2|FUT8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.259536	1030.50452	0.081924	4.2294E-05	4.3012	0.0022205	4.3831	0.0022628	516.2611901025887	49.755	0.30078	49.475	49.32	49.621	-0.27977	0.086027	0.00040556	NaN	54.765	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98611			27209	1022	18722	18761							-0.009512262715588804
IMTDLYYL	8	Unmodified	_IMTDLYYL_					0	0	0		nc|ENSG00000033170|Q9BYC5-2|FUT8;ENSG00000033170|ENST00000673929|FUT8	nc|ENSG00000033170|Q9BYC5-2|FUT8	nc|ENSG00000033170|Q9BYC5-2|FUT8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.259536	1030.50452	0.25645	0.00013239	4.1601	0.0021477	4.4166	0.0022801	516.2617185933537	49.558	0.34068	49.378	49.191	49.532	-0.18071	-0.011893	0.00025993	NaN	54.765	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192590			27210	1022	18722	18761							-0.009512262715588804
IMTTKATLSN	10	Unmodified	_IMTTKATLSN_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.30859375	2	540.291899	1078.56925	0.19409	0.00010486	-2.7999	-0.0015128	-2.6058	-0.0014079	540.2900749402897	72.605	0.5267	72.324	72.1	72.627	-0.28124					19	12	2	0	0	0	0.03519	1	8822	8822		27.047	0	1	265670	+		27211	23801	18723	18762	31482	31482					0.03310348534455443
IMVAHLAI	8	Unmodified	_IMVAHLAI_					0	0	0		ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000609263.1_1_1:165619003-165619255:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF;ENSG00000143198|ENST00000367889|MGST3	ENST00000488688.1_1_1:165619084-165620325:+|nuORF	ENST00000488688.1_1_1:165619084-165620325:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.7166442871094	2	434.259674	866.504795	-0.20803	-9.034E-05	-0.33095	-0.00014372	-0.53899	-0.00023406	434.2604635197625	47.915	0.28568	47.762	47.51	47.795	-0.15301					10	8	2	0	0	0	0.027866	1	4780	4780		24.504	7.799	1	143380			27212	5619	18724	18763	31483	31483					0.06620238238940601
IMVAHLAI	8	Unmodified	_IMVAHLAI_					0	0	0		ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000609263.1_1_1:165619003-165619255:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF;ENSG00000143198|ENST00000367889|MGST3	ENST00000488688.1_1_1:165619084-165620325:+|nuORF	ENST00000488688.1_1_1:165619084-165620325:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2738342285156	2	434.259674	866.504795	-0.45183	-0.00019621	-2.5421	-0.0011039	-2.9939	-0.0013001	434.2582375432975	48.011	0.22766	47.858	47.795	48.023	-0.15301					9	6	2	0	0	0	0.027866	1	4845	4845		67.327	12.433	1	215190			27213	5619	18724	18763	31484	31484					0.06620238238940601
IMVGNAML	8	Oxidation (M)	_IMVGNAM(Oxidation (M))L_		IMVGNAM(1)L		IM(-38)VGNAM(38)L	0	0	1			REV__ENSG00000175143|ENST00000642005|OR2T1	REV__ENSG00000175143|ENST00000642005|OR2T1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7205810546875	2	432.719524	863.424495	-0.36721	-0.0001589	2.6172	0.0011325	2.25	0.00097362	432.72054382328594	30.728	1.6273	30.55	30.243	31.871	-0.17817					75	39	3	0	0	0	0.94001	1	1968	1968		46.766	9.738	2	1735400	+		27214	26920	18725	18764	31485	31485		797			-0.012679911463806093
IMVNHWQND	9	Oxidation (M)	_IM(Oxidation (M))VNHWQND_		IM(1)VNHWQND		IM(66)VNHWQND	0	0	1			REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.761962890625	2	586.761297	1171.50804	-0.73377	-0.00043055	0.108	6.3372E-05	-0.62576	-0.00036717	586.7612211726155	76.504	0.88565	76.335	76.054	76.939	-0.16854					57	20	4	0	0	0	0.40179	1	9090	9090		65.803	7.5733	1	787780	+		27215	27301	18726	18765	31486	31486		812			-0.07085163445003673
IMVPLLIYGK	10	Unmodified	_IMVPLLIYGK_					0	0	0		ENST00000343028.8_3_12:27126735-27126897:-|nuORF	ENST00000343028.8_3_12:27126735-27126897:-|nuORF	ENST00000343028.8_3_12:27126735-27126897:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.8533935546875	2	573.851396	1145.68824	-0.24171	-0.00013871	3.105	0.0017818	2.8633	0.0016431	573.853087943874	64.116	0.82238	63.858	63.601	64.423	-0.25825					57	20	4	0	0	0	1.0939	1	7259	7259		33.516	1.5607	1	3171300			27216	12523	18727	18766	31487	31487					0.12122167229972547
IMVQNFELV	9	Unmodified	_IMVQNFELV_					0	0	0			REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF	REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7760620117188	2	546.791535	1091.56852	-0.76974	-0.00042089	4.406	0.0024091	3.6362	0.0019883	546.7940081229351	52.452	0.24427	52.452	52.351	52.595	0					6	5	2	0	0	0	0.023007	1	5635	5635		99.375	3.1845	1	57743	+		27217	34477	18728	18767	31488	31488					0.026395538853876133
IMYDDKYT	8	Unmodified	_IMYDDKYT_					0	0	0			REV__nc|ENSG00000185480|Q9NWS1-2|PARPBP	REV__nc|ENSG00000185480|Q9NWS1-2|PARPBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2655029296875	2	524.736425	1047.4583	0.077797	4.0823E-05	-1.4261	-0.00074833	-1.3483	-0.00070751	524.7378365023947	53.039	0.61443	52.849	52.631	53.245	-0.18982					37	15	3	0	0	0	0.027866	1	5506	5506		40.573	16.37	1	280320	+		27218	27767	18729	18768	31489	31489					-0.06353291173650177
IMYFFLLV	8	Unmodified	_IMYFFLLV_					0	0	0			REV__ENSG00000106537|ENST00000262067|TSPAN13;REV__ENST00000550528.5_1_12:58133675-58140075:+|nuORF	REV__ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2894287109375	2	523.293182	1044.57181	0.66941	0.0003503	1.4255	0.00074598	2.095	0.0010963	523.2937129938047	51.733	1.1744	51.549	51.14	52.314	-0.18404					85	30	4	0	0	0	0.40858	1	5309	5309		96.041	5.2642	1	7021700	+		27219	21625;23547	18730	18769	31490	31490					0.05130848730050275
INAADCDDTE	10	Unmodified	_INAADCDDTE_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7743530273438	2	533.703311	1065.39207	-0.11448	-6.1099E-05	3.5027	0.0018694	3.3882	0.0018083	533.7056929280683	47.803	0.1819	47.616	47.491	47.673	-0.18684					7	4	2	0	0	0	0.03519	1	4689	4689		35.152	4.6484	1	128690	+		27220	37044	18731	18770	31491	31491					-0.13801151806364942
INADGIVNQF	10	Unmodified	_INADGIVNQF_					0	0	0			REV__ENST00000523334.1_1_6:114270238-114277280:-|nuORF	REV__ENST00000523334.1_1_6:114270238-114277280:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.271728515625	2	545.780013	1089.54547	-0.49295	-0.00026904	2.7948	0.0015253	2.3018	0.0012563	545.7814812506175	64.236	0.60141	64.008	63.7	64.302	-0.22773					20	14	2	0	0	0	0.03519	1	7277	7277		72.879	6.45	1	440550	+		27221	34355	18732	18771	31492	31492					0.0042825109228488145
INAELISH	8	Unmodified	_INAELISH_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.7635803222656	2	448.745442	895.476331	-0.10411	-4.6718E-05	-0.12823	-5.7542E-05	-0.23234	-0.00010426	448.7451388402975	30.572	0.4248	30.422	30.259	30.684	-0.14952					16	9	2	0	0	0	0.027866	1	1921	1921		17.365	0	1	72568	+		27222	27297	18733	18772	31493	31493					0.024412118633904356
INARLFLL	8	Unmodified	_INARLFLL_					0	0	0			REV__ENSG00000154143|ENST00000284288|PANX3	REV__ENSG00000154143|ENST00000284288|PANX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.769287109375	2	480.30547	958.596387	-0.3308	-0.00015889	0.64751	0.000311	0.31671	0.00015212	480.3056911992536	40.918	0.69152	40.691	40.544	41.236	-0.2278					35	17	3	0	0	0	0.027866	1	3606	3606		21.702	0	1	125050	+		27223	24940	18734	18773	31494	31494					0.11543244927804608
INARLFLL	8	Unmodified	_INARLFLL_					0	0	0			REV__ENSG00000154143|ENST00000284288|PANX3	REV__ENSG00000154143|ENST00000284288|PANX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2976379394531	2	480.30547	958.596387	0.67919	0.00032622	2.8986	0.0013922	3.5778	0.0017184	480.3066898553031	19.481	0.59543	19.28	19.106	19.701	-0.2001					17	11	3	0	0	0	0.027866	1	413	413		40.573	10.069	1	73652	+		27224	24940	18734	18773	31495	31495					0.11543244927804608
INAVELKKP	9	Unmodified	_INAVELKKP_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.274169921875	2	506.313492	1010.61243	-0.21618	-0.00010946	-1.1927	-0.00060389	-1.4089	-0.00071335	506.31293941560926	67.572	0.90916	67.283	67.108	68.017	-0.28834					38	22	3	0	0	0	0.0242	1	8018	8018		35.152	0	1	644770			27225	7639;14472	18735	18774	31496	31496					0.1075490637402936
INCFLHLLT	9	Unmodified	_INCFLHLLT_					0	0	0			REV__ENST00000327892.12_1_6:30692959-30693124:+|nuORF	REV__ENST00000327892.12_1_6:30692959-30693124:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3058471679688	2	537.294245	1072.57394	-1.0781	-0.00057924	3.3158	0.0017815	2.2377	0.0012023	537.2961726843427	48.095	0.2221	48.161	48.079	48.301	0.066795					7	5	2	0	0	0	0.024457	1	4828	4828		29.15	0	1	163020	+		27226	30423	18736	18775	31497	31497					0.04055277467887208
INCLWIPL	8	Unmodified	_INCLWIPL_					0	0	0			REV__ENSG00000214237|ENST00000465419|MINDY4B	REV__ENSG00000214237|ENST00000465419|MINDY4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.25030517578125	2	486.272781	970.531009	-0.046606	-2.2663E-05	-2.3872	-0.0011608	-2.4338	-0.0011835	486.2716357057457	33.416	0.5485	33.472	33.105	33.654	0.056568					18	14	2	0	0	0	0.027866	1	2309	2309		13.775	0	1	212380	+		27227	28775	18737	18776	31498	31498					0.044565074104411906
INDDEFLHLP	10	Unmodified	_INDDEFLHLP_					0	0	0		ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.20391845703125	3	404.868027	1211.58225	-0.18653	-7.5518E-05	-1.4683	-0.00059448	-1.6549	-0.00067	405.202520904988	60.667	0.4337	60.49	60.28	60.714	-0.1761					13	10	2	0	0	0	0.03519	1	6757	6757		49.536	23.473	1	56939			27228	5559	18738	18777	31499	31499					-0.015074970817977373
INDIIPAL	8	Unmodified	_INDIIPAL_					0	0	0		CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant;CYLD|p.E638Rfs*9|1|0.59|ENSG00000083799|chr16:50784411-50784412|-/A|frameshift_variant;CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant;ENSG00000083799|ENST00000427738|CYLD	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant;ENSG00000083799|ENST00000427738|CYLD	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7480773925781	2	434.760561	867.506569	-0.40946	-0.00017802	2.5468	0.0011073	2.1373	0.00092923	434.7616870460331	65.139	0.34298	65.139	64.983	65.326	0					23	9	3	0	0	0	0.027866	1	7685	7685		119.56	37.252	1	811250			27229	613;1758	18739	18778	31500	31500					0.06751570528570028
INDIKKAR	8	Unmodified	_INDIKKAR_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6;PRPF6|p.L297H|1|0.17|ENSG00000101161|chr20:63999626-63999626|T/A|missense_variant	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.8160705566406	2	479.295633	956.576714	0.8921	0.00042758	2.6282	0.0012597	3.5203	0.0016873	479.29671875313636	49.269	0.76163	49.269	48.969	49.731	0					69	20	4	0	0	0	0.027866	1	5080	5080		92.191	20.813	1	2484400			27230	2288	18740	18779	31501	31501					0.0966886891702643
INDIKKAR	8	Unmodified	_INDIKKAR_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6;PRPF6|p.L297H|1|0.17|ENSG00000101161|chr20:63999626-63999626|T/A|missense_variant	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.295633	956.576714	-1.2493	-0.00059878	4.9034	0.0023502	3.6542	0.0017514	479.297792928127	49.197	1.0972	49.271	48.95	50.047	0.074196	-0.015278	0.0011425	NaN	92.191	67	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2552000			27231	2288	18740	18779							0.0966886891702643
INDKIKSL	8	Unmodified	_INDKIKSL_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.78411865234375	2	465.784567	929.554582	0.014969	6.9724E-06	-0.59589	-0.00027756	-0.58092	-0.00027058	465.78429135893896	42.389	1.4234	42.266	41.888	43.311	-0.12299					87	37	4	0	0	0	0.27613	1	3797	3797		122.18	5.2724	1	14550000	+		27232	28050	18741	18780	31502	31502					0.08698644448600135
INDKIKSL	8	Unmodified	_INDKIKSL_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7846374511719	2	465.784567	929.554582	-0.31787	-0.00014806	-0.34478	-0.00016059	-0.66265	-0.00030865	465.78441208050924	42.564	1.598	42.332	41.971	43.569	-0.23186					104	42	5	0	0	0	0.23402	2	3811	3811;3831		134.81	12.635	1	14954000	+		27233	28050	18741	18780	31503;31504	31503					0.08698644448600135
INDKIKSL	8	Unmodified	_INDKIKSL_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.78369140625	2	465.784567	929.554582	-0.52121	-0.00024277	-0.239	-0.00011132	-0.76022	-0.0003541	465.78444206596856	42.583	1.6264	42.357	42.001	43.628	-0.22597					95	43	4	0	0	0	0.15467	3	3831	3809;3820;3831		148.04	17.429	1	13220000	+		27234	28050	18741	18780	31505;31506;31507	31507					0.08698644448600135
INDKIKSL	8	Unmodified	_INDKIKSL_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	465.784567	929.554582	0.014969	6.9724E-06	-0.59589	-0.00027756	-0.58092	-0.00027058	465.78429135893896	42.389	1.4234	42.266	41.888	43.311	-0.12299	-0.052154	-0.0001837	NaN	148.04	87	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14550000	+		27235	28050	18741	18780							0.08698644448600135
INDKIKSL	8	Unmodified	_INDKIKSL_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	465.784567	929.554582	-0.31787	-0.00014806	-0.34478	-0.00016059	-0.66265	-0.00030865	465.78441208050924	42.564	1.598	42.332	41.971	43.569	-0.23186	0.013683	5.0225E-05	NaN	148.04	104	42	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14954000	+		27236	28050	18741	18780							0.08698644448600135
INDKIKSL	8	Unmodified	_INDKIKSL_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	465.784567	929.554582	-0.52121	-0.00024277	-0.239	-0.00011132	-0.76022	-0.0003541	465.78444206596856	42.583	1.6264	42.357	42.001	43.628	-0.22597	0.03847	0.00014876	NaN	148.04	95	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13220000	+		27237	28050	18741	18780							0.08698644448600135
INDPLYVE	8	Unmodified	_INDPLYVE_					0	0	0			REV__ENST00000553326.5_1_14:74325565-74327789:+|nuORF	REV__ENST00000553326.5_1_14:74325565-74327789:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.3028259277344	2	481.745108	961.475663	0.062073	2.9903E-05	3.3087	0.0015939	3.3707	0.0016238	481.7465453414161	73.577	0.43801	73.386	73.123	73.561	-0.19027					19	10	2	0	0	0	0.027866	1	8609	8609		35.618	22.659	1	194820	+		27238	23987	18742	18781	31508	31508					-0.006616275763235535
INDQIDLLV	9	Unmodified	_INDQIDLLV_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2499389648438	2	521.792589	1041.57063	-0.054644	-2.8513E-05	-2.5639	-0.0013378	-2.6186	-0.0013664	521.7912407962452	71.549	1.3017	71.274	70.568	71.87	-0.2751					54	30	2	0	0	0	0.024374	1	8405	8405		49.442	1.7842	1	289500	+		27239	26510	18743	18782	31509	31509					0.0515030589485832
INDQQQHLLAL	11	Unmodified	_INDQQQHLLAL_					0	0	0			REV__ENSG00000164535|ENST00000297056|DAGLB	REV__ENSG00000164535|ENST00000297056|DAGLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	431.5509948730469	3	431.570093	1291.68845	-0.71803	-0.00030988	1.0394	0.00044858	0.32138	0.0001387	431.90464217928377	36.305	0.35493	36.263	36.136	36.491	-0.042454					14	9	2	0	0	0	0.024774	1	2889	2889		25.068	4.7528	1	99985	+		27240	25769	18744	18783	31510	31510					0.05427258483541664
INDSQVLPN	9	Unmodified	_INDSQVLPN_					0	0	0			REV__nc|ENSG00000203805|Q5VZY2-4|PLPP4	REV__nc|ENSG00000203805|Q5VZY2-4|PLPP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3133544921875	2	500.258914	998.503274	0.36001	0.0001801	1.8054	0.00090318	2.1654	0.0010833	500.25970586315157	76.254	0.27728	76.266	76.128	76.405	0.011635					10	6	2	0	0	0	0.024374	1	9329	9329		40.778	7.2626	1	52005	+		27241	28547	18745	18784	31511	31511					0.0039627568389732915
INDSVLTQ	8	Unmodified	_INDSVLTQ_					0	0	0			REV__nc|ENSG00000157193|Q14114-2|LRP8	REV__nc|ENSG00000157193|Q14114-2|LRP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2457580566406	2	445.234907	888.455261	0.28849	0.00012845	-2.2201	-0.00098849	-1.9316	-0.00086004	445.23374300899417	102.93	2.7391	102.8	102.49	105.23	-0.12724					118	71	3	0	0	0	0.027866	1	12779	12779		13.454	0	1	2400600	+		27242	25118	18746	18785	31512	31512					0.006572017638518446
INEFAQLERE	10	Unmodified	_INEFAQLERE_					0	0	0			REV__ENSG00000143318|ENST00000368078|CASQ1	REV__ENSG00000143318|ENST00000368078|CASQ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.2384033203125	3	416.878815	1247.61462	0.051334	2.14E-05	-3.8183	-0.0015918	-3.7669	-0.0015704	416.87656157687667	22.083	0.32618	22.083	21.965	22.291	0					9	6	2	0	0	0	0.03519	1	729	729		37.508	21.501	1	9688.5	+		27243	24223	18747	18786	31513	31513					0.0007129032117063616
INEFFIDSCC	10	Unmodified	_INEFFIDSCC_					0	0	0		ENSG00000156486|ENST00000287042|KCNS2	ENSG00000156486|ENST00000287042|KCNS2	ENSG00000156486|ENST00000287042|KCNS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.3222045898438	2	595.746467	1189.47838	0.043503	2.5917E-05	-1.0383	-0.00061859	-0.99484	-0.00059267	595.7459650581048	50.806	0.37115	50.625	50.426	50.797	-0.18071					19	9	3	0	0	0	0.03519	1	5153	5153		21.96	0	1	259450			27244	6534	18748	18787	31514	31514					-0.10877863505311325
INEHEQPD	8	Unmodified	_INEHEQPD_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.31353759765625	2	491.217246	980.419939	-0.10102	-4.9622E-05	0.24527	0.00012048	0.14425	7.0858E-05	491.21744316520443	29.204	0.50794	29.055	28.869	29.377	-0.14952					15	11	2	0	0	0	0.027866	1	1725	1725		37.159	15.199	1	46580	+		27245	22097	18749	18788	31515	31515					-0.07105460763943938
INEIEILPLKG	11	Unmodified	_INEIEILPLKG_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;ENST00000473015.5_1_4:113483525-113509083:-|nuORF	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2275085449219	3	413.583339	1237.72819	-0.061572	-2.5465E-05	0.95872	0.00039651	0.89715	0.00037105	413.9180187341693	36.587	1.3708	36.382	35.886	37.256	-0.20518					41	35	2	0	0	0	0.024742	1	2945	2945		25.892	0	1	100770			27246	5262	18750	18789	31516	31516					0.11883385434225602
INEILIYQMTI	11	Unmodified	_INEILIYQMTI_					0	0	0			REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	REV__ENST00000567224.1_1_15:53809574-53809730:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2240295410156	3	450.916101	1349.72647	0.26546	0.0001197	0.3209	0.0001447	0.58636	0.0002644	450.91619841450546	24.263	1.0869	24.342	23.736	24.823	0.078344					63	23	4	0	0	0	0.024723	1	937	937		22.562	0	1	708550	+		27247	35317	18751	18790	31517	31517					0.0656000835397208
INEKKSKKD	9	Unmodified	_INEKKSKKD_					0	0	0			REV__ENSG00000008952|ENST00000337002|SEC62	REV__ENSG00000008952|ENST00000337002|SEC62	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167724609375	2	545.316763	1088.61897	-0.35128	-0.00019156	0.14645	7.9859E-05	-0.20484	-0.0001117	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.96322	1	10574	10574		27.882	1.1893	1	4936700	+		27248	19888	18752	18791	31518	31518					0.07820799534783873
INEKSKQLL	9	Unmodified	_INEKSKQLL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3056640625	2	536.821681	1071.62881	-0.69708	-0.00037421	0.0056751	3.0465E-06	-0.6914	-0.00037116	536.8215763931274	47.383	0.60148	47.383	47.146	47.748	0					41	17	3	0	0	0	0.024477	1	4803	4803		27.882	0	1	1957400	+		27249	21295	18753	18792	31519	31519					0.09585987540140195
INEKSKQLL	9	Unmodified	_INEKSKQLL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.821681	1071.62881	-0.36448	-0.00019566	-0.38918	-0.00020892	-0.75366	-0.00040458	536.8213796613402	47.569	0.47638	47.416	47.161	47.637	-0.15301	0.0035687	-0.0003947	NaN	51.193	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1527900	+		27250	21295	18753	18792							0.09585987540140195
INEKSKQLL	9	Unmodified	_INEKSKQLL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.821681	1071.62881	-1.5021	-0.00080636	0.74234	0.0003985	-0.75977	-0.00040786	536.8219387135316	47.379	0.47153	47.438	47.144	47.615	0.059093	0.025551	0.00082013	NaN	51.193	36	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1684800	+		27251	21295	18753	18792							0.09585987540140195
INEKSSLYMDQ	11	Unmodified	_INEKSSLYMDQ_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2792663574219	3	443.211465	1326.61257	-0.062666	-2.7774E-05	-2.189	-0.00097021	-2.2517	-0.00099798	443.21094932537306	54.801	0.17961	54.899	54.769	54.949	0.098015					6	4	2	0	0	0	0.024789	1	5945	5945		15.921	2.9632	1	34524	+		27252	26717	18754	18793	31520	31520					-0.037675064789254975
INERPIRQFT	10	Unmodified	_INERPIRQFT_					0	0	0			REV__ENST00000468603.6_1_9:21995123-22029553:+|nuORF	REV__ENST00000468603.6_1_9:21995123-22029553:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.2019958496094	3	425.238566	1272.69387	0.20809	8.8488E-05	-2.0303	-0.00086335	-1.8222	-0.00077486	425.23802158021476	34.884	1.9635	34.668	33.454	35.418	-0.21556					150	49	6	0	0	0	0.03519	1	2546	2546		35.178	0	1	3512900	+		27253	33108	18755	18794	31521	31521					0.06842982065973047
INETSQHHDDL	11	Unmodified	_INETSQHHDDL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000487938.5_1_10:17278234-17279267:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.8536376953125	3	436.865346	1307.57421	0.2649	0.00011573	-2.2801	-0.0009961	-2.0152	-0.00088037	436.8645393279249	38.654	0.4586	38.428	38.21	38.669	-0.2257					15	11	2	0	0	0	0.024738	1	3215	3215		25.068	9.1471	1	76883			27254	992	18756	18795	31522	31522					-0.06727676069226618
INEVHGLIVI	10	Unmodified	_INEVHGLIVI_					0	0	0			REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.830078125	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0781	1	11163	11163		35.618	3.6634	1	4870500	+		27255	25820	18757	18796	31523	31523					0.10094577919812764
INEWPAQP	8	Unmodified	_INEWPAQP_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1;REV__nc|ENSG00000147255|Q8N6C5-3|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.777587890625	2	477.737617	953.460681	0.40108	0.00019161	-4.4254	-0.0021142	-4.0243	-0.0019226	477.7355306105548	27.08	0.82796	27.08	26.825	27.653	0					44	21	3	0	0	0	0.027866	1	1487	1487		35.618	0	1	596610	+		27256	24543;36763	18758	18797	31524	31524					-0.017910746536699662
INFERLEAQ	9	Unmodified	_INFERLEAQ_					0	0	0		nc|ENSG00000113328|P51959-2|CCNG1;ENSG00000113328|ENST00000340828|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.3214111328125	2	560.293288	1118.57202	0.19076	0.00010688	4.2569	0.0023851	4.4477	0.002492	560.2959090419474	67.891	0.33559	67.91	67.669	68.004	0.018913					11	8	2	0	0	0	0.024427	1	8003	8003		19.997	0	1	127770			27257	3283	18759	18798	31525	31525					0.017479399836020093
INFLPVQP	8	Unmodified	_INFLPVQP_					0	0	0			REV__ENST00000493829.5_1_2:85843459-85872221:+|nuORF	REV__ENST00000493829.5_1_2:85843459-85872221:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.27984619140625	2	464.268553	926.522553	0.015807	7.3386E-06	-3.4716	-0.0016118	-3.4558	-0.0016044	464.266850459284	40.702	0.45986	40.702	40.448	40.908	0					20	12	2	0	0	0	0.027866	1	3591	3591		18.324	0	1	564730	+		27258	33773	18760	18799	31526	31526					0.05635276765474373
INFSIKAKL	9	Unmodified	_INFSIKAKL_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.32275390625	2	517.32386	1032.63317	-0.3252	-0.00016823	-1.1192	-0.00057898	-1.4444	-0.00074721	517.3231026879347	73.112	0.73267	72.922	72.504	73.237	-0.19026					35	17	3	0	0	0	0.74711	1	8580	8580		42.864	7.246	1	970100			27259	3748	18761	18800	31527	31527					0.11815496753706611
INFTALKTL	9	Unmodified	_INFTALKTL_					0	0	0			REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.77056884765625	2	510.808042	1019.60153	-0.67267	-0.00034361	-3.6971	-0.0018885	-4.3697	-0.0022321	510.80632980249686	84.084	0.52056	84.084	83.779	84.3	0					17	11	2	0	0	0	0.024495	1	10532	10532		14.137	3.2716	1	55997	+		27260	32761	18762	18801	31528	31528					0.09251503999769284
INFTLPLIN	9	Unmodified	_INFTLPLIN_					0	0	0			REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3095703125	2	522.808042	1043.60153	-1.0814	-0.00056535	2.6193	0.0013694	1.5379	0.00080401	522.8095142045801	32.442	0.80359	32.442	31.949	32.753	0					45	20	3	0	0	0	0.022832	1	2245	2245		62.107	0	1	994830	+		27261	35535	18763	18802	31529	31529					0.08147503999771288
INGAPPQMLI	10	Unmodified	_INGAPPQMLI_					0	0	0			REV__nc|ENSG00000106410|O60393-2|NOBOX	REV__nc|ENSG00000106410|O60393-2|NOBOX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2894897460938	2	527.291702	1052.56885	-0.27452	-0.00014475	-1.2011	-0.00063336	-1.4757	-0.00077811	527.2907734491956	104.12	0.67291	104.13	103.87	104.55	0.0031357					42	16	3	0	0	0	0.66532	1	13322	13322		69.628	6.3214	1	744260	+		27262	21618	18764	18803	31530	31530					0.044669736052583175
INGDSCRVY	9	Unmodified	_INGDSCRVY_					0	0	0			REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2694091796875	2	513.737291	1025.46003	0.13006	6.6815E-05	-0.28577	-0.00014681	-0.15571	-7.9996E-05	513.7370892613186	78.982	0.67195	78.83	78.605	79.277	-0.15188					25	15	2	0	0	0	0.024539	1	9483	9483		35.618	20.954	1	185790	+		27263	34917	18765	18804	31531	31531					-0.05168237365001005
INGDSCRVY	9	Unmodified	_INGDSCRVY_					0	0	0			REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.737291	1025.46003	0.19459	9.9967E-05	0.053151	2.7306E-05	0.24774	0.00012727	513.7372095270913	79.144	0.53974	78.922	78.659	79.199	-0.22215	0.030725	0.00015251	NaN	35.618	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175140	+		27264	34917	18765	18804							-0.05168237365001005
INGILKKLL	9	Unmodified	_INGILKKLL_					0	0	0			REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	REV__nc|ENSG00000049192|Q9UKP5-2|ADAMTS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2800598144531	2	506.349877	1010.6852	-0.11496	-5.8209E-05	-0.99793	-0.0005053	-1.1129	-0.00056351	506.3491385346468	50.306	0.73412	50.155	49.889	50.623	-0.1512					38	21	3	0	0	0	0.024436	1	5211	5211		16.473	0	1	362130	+		27265	36455	18766	18805	31532	31532					0.18028660167476573
INGNRHNITEM	11	Unmodified	_INGNRHNITEM_					0	0	0			REV__ENST00000524003.1_1_8:92080386-92080431:-|nuORF	REV__ENST00000524003.1_1_8:92080386-92080431:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.54833984375	3	433.547182	1297.61972	0.57212	0.00024804	1.7524	0.00075977	2.3246	0.0010078	433.54795475832015	24.534	1.8981	24.613	23.394	25.293	0.078344					147	42	5	0	0	0	1.0371	1	1018	1018		28.577	2.5133	1	1286500	+		27266	34368	18767	18806	31533	31533					-0.01718729087860993
INGRLELD	8	Unmodified	_INGRLELD_					0	0	0			REV__ENSG00000173809|ENST00000639142|TDRD12	REV__ENSG00000173809|ENST00000639142|TDRD12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2802734375	2	465.256174	928.497795	0.77889	0.00036238	-0.7905	-0.00036778	-0.011608	-5.4007E-06	465.2557438010755	40.915	0.67923	40.791	40.371	41.051	-0.12317					51	18	4	0	0	0	0.027866	1	3615	3615		25.45	0	1	2050100	+		27267	26809	18768	18807	31534	31534					0.030685968920693085
INGTELSH	8	Unmodified	_INGTELSH_					0	0	0		AMBRA1|p.D216N|1|0.14|ENSG00000110497|chr11:46543371-46543371|C/T|missense_variant	AMBRA1|p.D216N|1|0.14|ENSG00000110497|chr11:46543371-46543371|C/T|missense_variant	AMBRA1|p.D216N|1|0.14|ENSG00000110497|chr11:46543371-46543371|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7800598144531	2	435.719424	869.424296	0.33878	0.00014761	4.3798	0.0019083	4.7185	0.002056	435.7212170294617	38.958	0.64485	38.733	38.523	39.168	-0.2257					27	17	2	0	0	0	0.027866	1	3304	3304		45.952	5.3793	1	401310			27268	83	18769	18808	31535	31535					-0.015639515503721668
INGWHLVAG	9	Unmodified	_INGWHLVAG_					0	0	0		ENST00000553295.2_1_14:102310077-102310284:-|nuORF	ENST00000553295.2_1_14:102310077-102310284:-|nuORF	ENST00000553295.2_1_14:102310077-102310284:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.78369140625	2	483.761426	965.5083	-1.092	-0.00052826	-3.2282	-0.0015617	-4.3202	-0.0020899	483.7596706105103	30.408	0.70679	30.482	29.92	30.626	0.074314					27	16	2	0	0	0	0.024293	1	1894	1894		25.45	7.1881	1	134400			27269	16635	18770	18809	31536	31536					0.02416624337183748
INGYNVQNP	9	Unmodified	_INGYNVQNP_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7833251953125	2	509.751256	1017.48796	-1.1233	-0.00057262	-0.59482	-0.00030321	-1.7182	-0.00087583	509.75249939220737	49.647	0.41204	49.721	49.428	49.84	0.074196					14	10	2	0	0	0	0.024354	1	5068	5068		38.806	0	1	103630	+		27270	28172	18771	18810	31537	31537					-0.020085911132809997
INHPLVAVE	9	Unmodified	_INHPLVAVE_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.26312255859375	2	496.282192	990.549831	-0.66358	-0.00032933	-0.9536	-0.00047325	-1.6172	-0.00080258	496.2819243443907	43.674	0.9169	43.569	43.079	43.996	-0.10468					68	24	4	0	0	0	0.024354	1	4079	4079		30.504	1.3541	1	1651900	+		27271	24643	18772	18811	31538	31538					0.054177603058633395
INHPLVAVE	9	Unmodified	_INHPLVAVE_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.282192	990.549831	-0.52044	-0.00025828	0.18089	8.9774E-05	-0.33954	-0.00016851	496.28185537152586	43.615	1.245	43.615	43.002	44.247	0	-0.0063556	0.00071707	NaN	30.504	49	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319030	+		27272	24643	18772	18811							0.054177603058633395
INHPLVAVE	9	Unmodified	_INHPLVAVE_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.282192	990.549831	-0.80991	-0.00040194	0.25156	0.00012485	-0.55835	-0.0002771	496.2819032038583	43.814	1.1832	43.669	42.915	44.099	-0.14471	0.047864	0.00078722	NaN	30.504	47	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332430	+		27273	24643	18772	18811							0.054177603058633395
INIELIILS	9	Unmodified	_INIELIILS_					0	0	0			REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2882080078125	2	514.323525	1026.6325	-0.18341	-9.433E-05	-3.1531	-0.0016217	-3.3365	-0.001716	514.3217292196126	40.559	0.61524	40.334	40.078	40.693	-0.225					32	16	3	0	0	0	0.024288	1	3472	3472		44.377	0	1	1057900	+		27274	35322	18773	18812	31539	31539					0.12024657314009346
INIEMSLVE	9	Unmodified	_INIEMSLVE_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7869873046875	2	524.273175	1046.5318	-0.39485	-0.00020701	2.7819	0.0014585	2.3871	0.0012515	524.2754437724143	61.095	0.19794	60.889	60.81	61.008	-0.20599					5	4	2	0	0	0	0.02435	1	6822	6822		51.335	5.3835	1	42113	+		27275	24526	18774	18813	31540	31540					0.01039257268826077
INIFMCSG	8	Unmodified	_INIFMCSG_					0	0	0			REV__OR6C70|p.Y257N|1|0.46|ENSG00000184954|chr12:55469370-55469370|A/T|missense_variant	REV__OR6C70|p.Y257N|1|0.46|ENSG00000184954|chr12:55469370-55469370|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.78814697265625	2	442.703874	883.393195	0.27983	0.00012388	-0.10492	-4.6449E-05	0.17491	7.7433E-05	442.7020530157196	40.247	0.20544	40.247	40.176	40.381	0					8	5	2	0	0	0	0.027866	1	3545	3545		19.36	0	1	34907	+		27276	37327	18775	18814	31541	31541					-0.05316564180475325
INIFVVDKV	9	Unmodified	_INIFVVDKV_					0	0	0			REV__ENSG00000048342|ENST00000424120|CC2D2A	REV__ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2723999023438	2	523.815867	1045.61718	0.44276	0.00023193	-1.6849	-0.00088257	-1.2421	-0.00065064	523.8152387820794	62.872	0.41046	62.926	62.679	63.09	0.054104					19	9	3	0	0	0	0.024541	1	7214	7214		18.262	0.79408	1	225870	+		27277	20137	18776	18815	31542	31542					0.0961979051680828
INIIDTYL	8	Unmodified	_INIIDTYL_					0	0	0			REV__ENST00000533377.1_1_8:145066406-145067006:+|nuORF	REV__ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	482.77099609375	2	482.771126	963.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.905	1	95.768	95.268	96.268	-0.13689								0	0	0	0.60928	1	11835	11835		47.657	1.7054	1		+		27278	27201	18777	18816	31543	31543					0.04447535837425676
INIKEDMFPV	10	Unmodified	_INIKEDMFPV_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2;nc|ENSG00000164659|A8MWY0-2|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	402.2112121582031	3	402.546008	1204.6162	-0.52333	-0.00021067	-0.51924	-0.00020902	-1.0426	-0.00041968	402.545650441566	35.757	0.83321	35.714	35.447	36.28	-0.042458					32	22	2	0	0	0	0.03519	1	2771	2771		45.022	8.7046	1	832810			27279	7304	18778	18817	31544	31544					0.02207208085565071
INIKHSLDK	9	Unmodified	_INIKHSLDK_					0	0	0			REV__ENST00000536441.6_2_11:94906305-94906422:-|nuORF	REV__ENST00000536441.6_2_11:94906305-94906422:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8302612304688	2	534.314023	1066.61349	1.0251	0.00054772	3.0867	0.0016492	4.1118	0.002197	534.3158071010387	63.811	0.39527	63.811	63.631	64.026	0					22	10	3	0	0	0	0.024397	1	7454	7454		47.657	14.845	1	398040	+		27280	34687	18779	18818	31545	31545					0.08285120742925756
INILLELLN	9	Unmodified	_INILLELLN_					0	0	0			REV__ENSG00000136156|ENST00000647800|ITM2B	REV__ENSG00000136156|ENST00000647800|ITM2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7636108398438	2	527.828975	1053.6434	-1.8739	-0.00098911	1.7434	0.00092024	-0.13049	-6.8878E-05	527.8296308461746	92.55	1.0087	92.407	92.167	93.175	-0.14356					48	23	4	0	0	0	0.024495	1	11399	11399		26.693	3.6504	1	303700	+		27281	23631	18780	18819	31546	31546					0.11872059688289482
INILVKSKA	9	Unmodified	_INILVKSKA_					0	0	0		ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;nc|ENSG00000186815|Q9ULQ1-2|TPCN1;ENST00000546503.1_1_12:113715083-113718023:+|nuORF	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2699279785156	2	493.32386	984.633166	-0.11516	-5.681E-05	-0.23856	-0.00011769	-0.35372	-0.0001745	493.323638192467	25.227	0.45922	25.056	24.912	25.371	-0.17078					22	10	3	0	0	0	0.024456	1	1188	1188		42.864	5.0528	1	211190			27282	9579	18781	18820	31547	31547					0.14023496753702602
INIMKKIVN	9	Unmodified	_INIMKKIVN_					0	0	0			REV__ENSG00000149084|ENST00000278353|HSD17B12	REV__ENSG00000149084|ENST00000278353|HSD17B12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2955322265625	2	536.830995	1071.64744	-0.32787	-0.00017601	-2.5448	-0.0013661	-2.8727	-0.0015421	536.82913830962	74.976	0.4947	74.717	74.409	74.904	-0.25887					28	11	3	0	0	0	0.023817	1	9130	9130		60.972	0	1	636070	+		27283	24651	18782	18821	31548	31548					0.11447825910340725
INIMKKIVN	9	Unmodified	_INIMKKIVN_					0	0	0			REV__ENSG00000149084|ENST00000278353|HSD17B12	REV__ENSG00000149084|ENST00000278353|HSD17B12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.296630859375	2	536.830995	1071.64744	-0.9931	-0.00053313	-1.7532	-0.00094119	-2.7463	-0.0014743	536.8294768010336	74.712	0.53321	74.722	74.439	74.973	0.010376					32	12	3	0	0	0	0.023417	1	9051	9051		79.451	10.664	1	582280	+		27284	24651	18782	18821	31549	31549					0.11447825910340725
INIMKKIVN	9	Unmodified	_INIMKKIVN_					0	0	0			REV__ENSG00000149084|ENST00000278353|HSD17B12	REV__ENSG00000149084|ENST00000278353|HSD17B12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2944946289062	2	536.830995	1071.64744	-0.11358	-6.0972E-05	-2.6596	-0.0014278	-2.7732	-0.0014888	537.331118568116	74.865	0.28572	74.589	74.352	74.638	-0.27573					9	6	2	0	0	0	0.024294	1	8824	8824		65.803	12.452	1	78381	+		27285	24651	18782	18821	31550	31550					0.11447825910340725
ININFMAL	8	Unmodified	_ININFMAL_					0	0	0			REV__DHCR24-PCNXL2|1|fusion	REV__DHCR24-PCNXL2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.30572509765625	2	468.254588	934.494624	-0.26513	-0.00012415	-3.5828	-0.0016776	-3.8479	-0.0018018	468.25272399478706	62.223	0.21053	61.996	61.839	62.049	-0.22663					6	5	2	0	0	0	0.027866	1	7204	7204		52.299	6.3472	1	100620	+		27286	19670	18783	18822	31551	31551					0.024756305137202617
INIPRLLLD	9	Unmodified	_INIPRLLLD_					0	0	0		nc|ENSG00000147874|Q7Z4H7-2|HAUS6;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.83447265625	2	533.834591	1065.65463	-0.045142	-2.4098E-05	-0.32582	-0.00017394	-0.37096	-0.00019803	533.8342289269806	81.141	0.85419	80.903	80.49	81.345	-0.23784					59	20	4	0	0	0	0.17822	1	9761	9761		93.195	8.0346	1	1258200			27287	5998	18784	18823	31552	31552					0.12442881782430959
INIQNISIV	9	Unmodified	_INIQNISIV_					0	0	0		RALBP1|p.M337I|1|0.26|ENSG00000017797|chr18:9522467-9522467|G/C|missense_variant	RALBP1|p.M337I|1|0.26|ENSG00000017797|chr18:9522467-9522467|G/C|missense_variant	RALBP1|p.M337I|1|0.26|ENSG00000017797|chr18:9522467-9522467|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8233947753906	2	507.303124	1012.5917	-0.67821	-0.00034406	1.2949	0.00065691	0.61671	0.00031286	507.3032035015	60.586	0.64197	60.373	60.04	60.682	-0.2134					28	16	3	0	0	0	0.023061	1	6932	6932		79.713	0	1	247100			27288	19025	18785	18824	31553	31553					0.0859031599438822
INIQVPTV	8	Unmodified	_INIQVPTV_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2664489746094	2	442.26601	882.517468	-1.4467	-0.00063982	1.678	0.00074212	0.2313	0.0001023	442.26660041069727	60.147	0.52953	60.226	59.863	60.392	0.078888					46	13	5	0	0	0	0.25873	1	6815	6815		129.68	18.034	1	3018000	+		27289	24725	18786	18825	31554	31554					0.07150972902843478
INIVTEQTL	9	Unmodified	_INIVTEQTL_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.7904052734375	2	515.792589	1029.57063	-0.45891	-0.0002367	-1.8467	-0.00095251	-2.3056	-0.0011892	515.7909589775821	52.346	1.0341	52.346	51.977	53.011	0					43	26	2	0	0	0	0.56934	1	5632	5632		54.776	3.5836	1	1751200	+		27290	25863	18787	18826	31555	31555					0.057023058948516336
INKAALLKN	9	Unmodified	_INKAALLKN_					0	0	0			REV__nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	REV__nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.81317138671875	2	492.813659	983.612765	-0.74615	-0.00036771	0.20524	0.00010114	-0.54091	-0.00026657	492.81379745729737	29.968	0.71607	29.792	29.529	30.245	-0.17651					47	16	4	0	0	0	0.13494	1	1872	1872		102.77	8.7669	1	681270	+		27291	27994	18788	18827	31556	31556					0.12030326093884014
INKAALLKN	9	Unmodified	_INKAALLKN_					0	0	0			REV__nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	REV__nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	492.813659	983.612765	-0.82114	-0.00040467	0.27892	0.00013745	-0.54222	-0.00026721	492.81384715240534	30.083	0.71518	29.839	29.568	30.284	-0.24415	-0.0040114	0.00030983	NaN	102.77	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	709600	+		27292	27994	18788	18827							0.12030326093884014
INKAALLKN	9	Unmodified	_INKAALLKN_					0	0	0			REV__nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	REV__nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	492.813659	983.612765	-0.74615	-0.00036771	0.20524	0.00010114	-0.54091	-0.00026657	492.81379745729737	29.968	0.71607	29.792	29.529	30.245	-0.17651	-0.05128	0.00023721	NaN	102.77	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	681270	+		27293	27994	18788	18827							0.12030326093884014
INKCDDIGSH	10	Unmodified	_INKCDDIGSH_					0	0	0			REV__nc|ENSG00000117419|O43414-3|ERI3	REV__nc|ENSG00000117419|O43414-3|ERI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2404174804688	2	551.253305	1100.49206	-0.85018	-0.00046866	-1.5767	-0.00086915	-2.4269	-0.0013378	551.2526502217195	82.91	0.3864	82.937	82.659	83.046	0.026558					12	8	3	0	0	0	0.03519	1	10291	10291		25.574	0	1	90619	+		27294	22344	18789	18828	31557	31557					-0.05416869681857861
INKCDDIGSH	10	Unmodified	_INKCDDIGSH_					0	0	0			REV__nc|ENSG00000117419|O43414-3|ERI3	REV__nc|ENSG00000117419|O43414-3|ERI3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.253305	1100.49206	0.998	0.00055015	-4.3466	-0.0023961	-3.3486	-0.0018459	551.250593862288	83.027	0.25643	82.937	82.701	82.958	-0.090454	-7.5871E-05	-0.0020897	NaN	45.972	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92936	+		27295	22344	18789	18828							-0.05416869681857861
INKDKSKQT	9	Unmodified	_INKDKSKQT_					0	0	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.7850952148438	2	531.301113	1060.58767	0.096156	5.1088E-05	-1.5368	-0.00081653	-1.4407	-0.00076544	531.3004121161799	43.328	0.25865	43.358	43.191	43.45	0.030827					8	6	2	0	0	0	0.024367	1	3972	3972		62.107	14.148	1	111760	+		27296	23938	18790	18829	31558	31558					0.0598022650067378
INKEDIFEDL	10	Unmodified	_INKEDIFEDL_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2275085449219	3	412.543321	1234.60813	-0.85487	-0.00035267	2.4377	0.0010056	1.5828	0.00065298	412.5441517416462	37.289	0.46465	37.07	36.807	37.271	-0.2195					19	11	3	0	0	0	0.03519	1	2944	2944		35.178	12.617	1	90080			27297	6972	18791	18830	31559	31559					0.00021352369822125183
INKEDIFEDL	10	Unmodified	_INKEDIFEDL_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	412.543321	1234.60813	1.7121	0.00070633	4.0584	0.0016743	5.7705	0.0023806	412.54521449918946	37.243	0.4395	37.243	37.12	37.559	0	0.094415	0.0014301	NaN	35.178	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90534			27298	6972	18791	18830							0.00021352369822125183
INKEDIFEDL	10	Unmodified	_INKEDIFEDL_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	412.543321	1234.60813	0.76921	0.00031733	6.5533	0.0027035	7.3225	0.0030208	412.5459399639199	37.18	0.32701	37.117	36.941	37.268	-0.063385	-0.032091	0.0045178	NaN	35.178	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92362			27299	6972	18791	18830							0.00021352369822125183
INKEDIFEDL	10	Unmodified	_INKEDIFEDL_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	412.543321	1234.60813	0.45338	0.00018704	6.0642	0.0025018	6.5176	0.0026888	412.54564467584964	37.261	0.41298	37.293	37.112	37.525	0.032269	0.14372	0.0039125	NaN	35.178	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84242			27300	6972	18791	18830							0.00021352369822125183
INKEDIFEDL	10	Unmodified	_INKEDIFEDL_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	412.543321	1234.60813	0.22368	9.2276E-05	0.97233	0.00040113	1.196	0.00049341	412.5437920865376	37.333	0.46078	37.14	36.889	37.35	-0.193	-0.0090712	-0.0023893	NaN	35.178	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143510			27301	6972	18791	18830							0.00021352369822125183
INKEDIFEDL	10	Unmodified	_INKEDIFEDL_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	412.543321	1234.60813	0.2795	0.00011531	0.55784	0.00023013	0.83734	0.00034544	412.54355137675884	37.241	0.38659	37.031	36.806	37.192	-0.2092	-0.11775	-0.0029023	NaN	35.178	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101580			27302	6972	18791	18830							0.00021352369822125183
INKELKSK	8	Unmodified	_INKELKSK_					0	0	0			REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2976379394531	2	480.297842	958.581131	0.54178	0.00026022	-0.72138	-0.00034648	-0.1796	-8.6261E-05	480.29742495686094	19.281	0.59593	19.081	18.859	19.455	-0.2001					35	11	5	0	0	0	1.0198	1	413	413		34.173	2.2177	1	1077000	+		27303	19138	18792	18831	31560	31560					0.10018333339962737
INKELNKP	8	Unmodified	_INKELNKP_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2673645019531	2	478.282192	954.549831	-0.024279	-1.1612E-05	-0.37159	-0.00017773	-0.39587	-0.00018934	478.2817828591886	49.116	0.78537	48.963	48.469	49.254	-0.15277					37	21	2	0	0	0	0.027866	1	5069	5069		23.042	0	1	912420			27304	3009	18793	18832	31561	31561					0.07073760305854648
INKEVQDAN	9	Unmodified	_INKEVQDAN_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.277587890625	2	515.76182	1029.50909	-0.71195	-0.00036719	-0.29096	-0.00015007	-1.0029	-0.00051726	515.7618471459848	46.159	0.66619	45.957	45.528	46.194	-0.20226					33	17	3	0	0	0	0.024466	1	4423	4423		18.262	0	1	418220	+		27305	22428	18794	18833	31562	31562					-0.004486258044153146
INKIDRLI	8	Unmodified	_INKIDRLI_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000587957.1_1_17:42953300-42956953:-|nuORF;nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.81353759765625	2	492.813659	983.612765	-0.040067	-1.9746E-05	-0.53686	-0.00026457	-0.57692	-0.00028432	492.81342040933566	30.048	0.80215	29.898	29.584	30.386	-0.14952					47	18	3	0	0	0	0.42327	1	1871	1871		94.006	0	1	770300			27306	5431;2945	18795	18834	31563	31563					0.12030326093906751
INKIHLVDV	9	Unmodified	_INKIHLVDV_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|19|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|19|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|19|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.302978515625	2	525.818941	1049.62333	0.12827	6.7446E-05	-1.1713	-0.00061588	-1.043	-0.00054843	525.8181569589716	65.494	0.4305	65.532	65.389	65.82	0.037376					17	11	2	0	0	0	0.024523	1	7664	7664		2.7184	0	1	152260			27307	17830	18796	18835	31564	31564					0.10050308748327552
INKKEKKN	8	Unmodified	_INKKEKKN_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.3088073730469	2	501.308741	1000.60293	0.36331	0.00018213	-0.93362	-0.00046803	-0.5703	-0.0002859	501.3081616442008	21.41	0.72216	21.233	20.918	21.64	-0.17721					33	14	3	0	0	0	0.6536	1	661	661		71.296	2.5089	1	715790	+		27308	20836	18797	18836	31565	31565					0.10265138088516323
INKKKETV	8	Unmodified	_INKKKETV_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.29766845703125	2	480.297842	958.581131	2.1068	0.0010119	-2.3136	-0.0011112	-0.2068	-9.9327E-05	480.2966729074375	19.235	0.7917	19.002	18.78	19.572	-0.23345					37	15	4	0	0	0	0.37125	1	375	375		101.21	3.7389	1	1123000	+		27309	25596	18798	18837	31566	31566					0.10018333339951369
INKKRIAL	8	Unmodified	_INKKRIAL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.32293701171875	2	478.324194	954.633835	-0.20515	-9.813E-05	0.0057441	2.7475E-06	-0.19941	-9.5383E-05	478.32404960235226	24.537	0.6041	24.362	24.129	24.733	-0.17484					31	13	3	0	0	0	0.52467	1	1075	1075		83.287	6.4406	1	890450			27310	5981	18799	18838	31567	31567					0.15470336193402545
INKKRIAL	8	Unmodified	_INKKRIAL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.3236083984375	2	478.324194	954.633835	2.213	0.0010585	-2.63	-0.001258	-0.41694	-0.00019943	478.3227944242298	24.62	0.65778	24.44	24.198	24.855	-0.18089					36	14	4	0	0	0	0.71833	1	1069	1069		65.803	5.5092	1	783180			27311	5981	18799	18838	31568	31568					0.15470336193402545
INKLLTTLG	9	Unmodified	_INKLLTTLG_					0	0	0		KIF1A|p.S274L|1|0.35|ENSG00000130294|chr2:240783087-240783087|G/A|missense_variant	KIF1A|p.S274L|1|0.35|ENSG00000130294|chr2:240783087-240783087|G/A|missense_variant	KIF1A|p.S274L|1|0.35|ENSG00000130294|chr2:240783087-240783087|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.29229736328125	2	486.808042	971.601532	-0.49404	-0.0002405	-0.54418	-0.00026491	-1.0382	-0.00050542	486.8078315493074	81.945	0.12726	81.805	81.743	81.87	-0.14014					4	2	2	0	0	0	0.024541	1	9846	9846		21.96	3.6355	1	56115			27312	17799	18800	18839	31569	31569					0.11459503999753906
INKLVDPQF	9	Unmodified	_INKLVDPQF_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.772216796875	2	537.303124	1072.5917	-0.29464	-0.00015831	0.0054524	2.9296E-06	-0.28919	-0.00015538	537.3032536863598	58.32	0.42592	58.142	57.974	58.4	-0.17776					15	9	2	0	0	0	0.024209	1	6420	6420		56.721	18.91	1	387810	+		27313	22872	18801	18840	31570	31570					0.058303159943761784
INKLVKVCS	9	Unmodified	_INKLVKVCS_					0	0	0			REV__ENSG00000169548|ENST00000302097|ZNF280A	REV__ENSG00000169548|ENST00000302097|ZNF280A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2699279785156	2	502.30207	1002.58959	-0.22707	-0.00011406	-2.5969	-0.0013044	-2.824	-0.0014185	502.30042356296076	39.557	0.72315	39.392	39.008	39.731	-0.16458					34	18	3	0	0	0	0.024539	1	3377	3377		20.947	12.125	1	304380	+		27314	26376	18802	18841	31571	31571					0.08839563984918186
INKNAISKGT	10	Unmodified	_INKNAISKGT_					0	0	0			REV__nc|ENSG00000067829|P51553-2|IDH3G	REV__nc|ENSG00000067829|P51553-2|IDH3G	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3032836914062	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	1.0616	1	11045	11045		37.812	1.3648	1	11897000	+		27315	20366	18803	18842	31572	31572					0.07224530363282611
INKNAISKGT	10	Unmodified	_INKNAISKGT_					0	0	0			REV__nc|ENSG00000067829|P51553-2|IDH3G	REV__nc|ENSG00000067829|P51553-2|IDH3G	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3032836914062	2	523.303655	1044.59276	0.82974	0.00043421	-1.2581	-0.00065835	-0.42833	-0.00022415	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.0719	1	10303	10303		36.447	3.6962	1	3893600	+		27316	20366	18803	18842	31573	31573					0.07224530363282611
INKQKLGSKT	10	Unmodified	_INKQKLGSKT_					0	0	0			REV__ENST00000489193.1_1_3:86062314-86062485:+|nuORF	REV__ENST00000489193.1_1_3:86062314-86062485:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.3280639648438	2	558.840405	1115.66626	-0.2281	-0.00012747	-0.96356	-0.00053847	-1.1917	-0.00066595	558.8402956029827	99.266	1.3815	99.098	98.284	99.666	-0.16863					64	32	4	0	0	0	0.03519	1	12312	12312		25.126	3.4402	1	67140	+		27317	33662	18804	18843	31574	31574					0.11305078805776247
INKRDKDL	8	Unmodified	_INKRDKDL_					0	0	0			REV__ENST00000443413.1_1_X:91931520-91931646:-|nuORF	REV__ENST00000443413.1_1_X:91931520-91931646:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2886657714844	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.93437	1	10612	10612		47.657	10.498	1	10074000	+		27318	32579	18805	18844	31575	31575					0.06628261191792717
INKVKGIPS	9	Unmodified	_INKVKGIPS_					0	0	0			REV__ENST00000471482.5_1_2:172544095-172549436:+|nuORF	REV__ENST00000471482.5_1_2:172544095-172549436:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3237609863281	2	478.300384	954.586216	0.14832	7.0943E-05	-0.40486	-0.00019365	-0.25654	-0.0001227	478.2999412163285	24.7	0.4594	24.485	24.218	24.677	-0.2151					17	10	2	0	0	0	0.024292	1	1124	1124		40.778	1.972	1	186970	+		27319	33177	18806	18845	31576	31576					0.10710637202578255
INKVKHLS	8	Unmodified	_INKVKHLS_					0	0	0			REV__ENSG00000213186|ENST00000309784|TRIM59	REV__ENSG00000213186|ENST00000309784|TRIM59	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2666320800781	2	469.792727	937.5709	-0.38843	-0.00018248	0.18616	8.7459E-05	-0.20226	-9.5022E-05	469.79265914763533	29.822	0.42039	29.578	29.316	29.737	-0.24445					15	9	2	0	0	0	0.027866	1	1852	1852		82.305	18.999	1	168610	+		27320	28731	18807	18846	31577	31577					0.09961770405368497
INLAPCPPKGQ	11	Unmodified	_INLAPCPPKGQ_					0	0	0			REV__ENST00000489744.1_1_3:196626921-196632085:+|nuORF	REV__ENST00000489744.1_1_3:196626921-196632085:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.3029174804688	2	569.307884	1136.60121	1.1578	0.00065915	-1.22	-0.00069458	-0.062236	-3.5431E-05	569.3066317355715	98.934	0.43649	98.809	98.59	99.027	-0.12458					16	10	2	0	0	0	0.024741	1	12270	12270		30.318	3.6248	1	61613	+		27321	33683	18808	18847	31578	31578					0.038377610082534375
INLDKYEV	8	Unmodified	_INLDKYEV_					0	0	0		ENSG00000107742|ENST00000373109|SPOCK2	ENSG00000107742|ENST00000373109|SPOCK2	ENSG00000107742|ENST00000373109|SPOCK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.79217529296875	2	497.266207	992.517862	0.88895	0.00044205	-0.8252	-0.00041034	0.063756	3.1704E-05	497.26569080029856	71.157	0.73245	71.157	70.909	71.642	0					34	18	2	0	0	0	0.027866	1	8628	8628		26.693	0	1	233890			27322	2851	18809	18848	31579	31579					0.02130347832053303
INLENDEIF	9	Unmodified	_INLENDEIF_					0	0	0			REV__ENSG00000151414|ENST00000367385|NEK7	REV__ENSG00000151414|ENST00000367385|NEK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.814208984375	2	553.771854	1105.52915	0.49977	0.00027676	-3.0138	-0.0016689	-2.514	-0.0013922	553.768629904537	58.502	0.2084	58.26	58.173	58.381	-0.24165					6	4	2	0	0	0	0.022083	1	6421	6421		99.375	25.12	1	53443	+		27323	22454	18810	18849	31580	31580					-0.01938874864481477
INLEYFNK	8	Unmodified	_INLEYFNK_					0	0	0			REV__ENSG00000104760|ENST00000427924|FGL1	REV__ENSG00000104760|ENST00000427924|FGL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7472534179688	2	520.7742	1039.53385	-0.34411	-0.0001792	3.4766	0.0018105	3.1325	0.0016313	520.7755627942573	34.801	0.97807	34.615	34.282	35.26	-0.18675					35	24	3	0	0	0	0.027866	1	2675	2675		24.203	0	1	240560	+		27324	21459	18811	18850	31581	31581					0.01566054068939593
INLFPATLF	9	Unmodified	_INLFPATLF_					0	0	0		ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900;ENSG00000047457|ENST00000264613|CP	ENST00000489736.5_1_3:148904295-148925363:-|nuORF	ENST00000489736.5_1_3:148904295-148925363:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.704833984375	2	518.29731	1034.58007	-0.043324	-2.2455E-05	-4.132	-0.0021416	-4.1753	-0.0021641	518.2949875537913	34.416	0.55051	34.209	33.895	34.446	-0.20696					32	13	3	0	0	0	0.024292	1	2515	2515		58.782	3.2778	1	1062500		+	27325	491	18812	18851	31582	31582					0.06416118971037577
INLGALRPL	9	Unmodified	_INLGALRPL_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.8075866699219	2	483.808377	965.6022	-0.79863	-0.00038638	0.74051	0.00035827	-0.058112	-2.8115E-05	483.8085527017987	64.599	0.82066	64.337	63.901	64.722	-0.2626					50	21	3	0	0	0	0.75397	1	7587	7587		42.396	1.8235	1	1174000	+		27326	20703	18813	18852	31583	31583					0.11802343439444485
INLHSSYSF	9	Unmodified	_INLHSSYSF_					0	0	0			REV__ENSG00000124459|ENST00000269973|ZNF45	REV__ENSG00000124459|ENST00000269973|ZNF45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2435913085938	2	534.261456	1066.50836	-1.4036	-0.00074987	1.7166	0.00091713	0.31306	0.00016725	534.2620889575671	55.75	1.03	55.534	55.168	56.198	-0.21551					48	27	2	0	0	0	0.024319	1	6094	6094		47.657	9.8458	1	1775100	+		27327	22763	18814	18853	31584	31584					-0.022234204534925084
INLKAAAASPG	11	Unmodified	_INLKAAAASPG_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3006591796875	2	506.792924	1011.57129	-0.68791	-0.00034863	1.1135	0.00056432	0.42559	0.00021569	506.793392423769	32.416	0.38276	32.416	32.149	32.531	0					26	9	4	0	0	0	0.024785	1	2256	2256		54.776	10.66	1	1966300	+		27328	23259	18815	18854	31585	31585					0.06597145334558263
INLKVKILKEK	11	Unmodified	_INLKVKILKEK_					0	0	0			REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2588806152344	3	442.634146	1324.88061	-0.88285	-0.00039078	-1.0309	-0.00045631	-1.9138	-0.00084709	442.6341179715382	27.122	0.18294	27.203	27.136	27.319	0.081293					6	4	2	0	0	0	0.024797	1	1420	1420		20.315	2.4819	1	77089	+		27329	34380	18816	18855	31586	31586					0.23116205901624198
INLNLRIY	8	Unmodified	_INLNLRIY_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8039245605469	2	509.805834	1017.59712	-0.17148	-8.7423E-05	-4.049	-0.0020642	-4.2205	-0.0021516	509.80368236575634	98.113	1.9328	98.113	97.771	99.704	0					58	44	2	0	0	0	1.0574	1	12514	12514		26.796	0	1	902990	+		27330	28409	18817	18856	31587	31587					0.08902039576832976
INLPLSVVF	9	Unmodified	_INLPLSVVF_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2820739746094	2	501.305136	1000.59572	1.0281	0.00051539	-0.84077	-0.00042148	0.18732	9.3904E-05	501.30449487757147	97.142	1.1044	97.142	96.354	97.458	-3.0518E-05					32	24	2	0	0	0	0.024323	1	12314	12314		53.351	9.2347	1	170980	+		27331	27385	18818	18857	31588	31588					0.09544405488099983
INLPNKWFK	9	Unmodified	_INLPNKWFK_					0	0	0			REV__ENSG00000170745|ENST00000304101|KCNS3	REV__ENSG00000170745|ENST00000304101|KCNS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	580.2594604492188	2	580.334759	1158.65496	-1.0626	-0.00061668	0.64529	0.00037448	-0.41734	-0.0002422	580.3350654527507	42.986	0.39196	42.76	42.559	42.951	-0.22597					15	9	2	0	0	0	0.024506	1	3864	3864		38.806	19.703	1	121020	+		27332	26500	18819	18858	31589	31589					0.08198301502261529
INLPNKWFK	9	Unmodified	_INLPNKWFK_					0	0	0			REV__ENSG00000170745|ENST00000304101|KCNS3	REV__ENSG00000170745|ENST00000304101|KCNS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	580.334759	1158.65496	-0.16234	-9.421E-05	-0.4274	-0.00024804	-0.58974	-0.00034225	580.3342637805556	42.811	0.42692	42.698	42.5	42.927	-0.11253	-0.057803	-0.00062148	NaN	38.806	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103450	+		27333	26500	18819	18858							0.08198301502261529
INLPNKWFK	9	Unmodified	_INLPNKWFK_					0	0	0			REV__ENSG00000170745|ENST00000304101|KCNS3	REV__ENSG00000170745|ENST00000304101|KCNS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	580.334759	1158.65496	-0.96878	-0.00056222	-0.053856	-3.1255E-05	-1.0226	-0.00059347	580.334560446008	43.047	0.35431	42.809	42.525	42.879	-0.23737	0.053325	-0.00018792	NaN	38.806	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133060	+		27334	26500	18819	18858							0.08198301502261529
INLQLLFLN	9	Unmodified	_INLQLLFLN_					0	0	0		SLITRK2|p.D532Tfs*9|1|0.24|ENSG00000185985|chrX:145824017-145824017|G/-|frameshift_variant;nc|ENSG00000185985|Q9H156-2|SLITRK2;ENSG00000185985|ENST00000335565|SLITRK2	SLITRK2|p.D532Tfs*9|1|0.24|ENSG00000185985|chrX:145824017-145824017|G/-|frameshift_variant	SLITRK2|p.D532Tfs*9|1|0.24|ENSG00000185985|chrX:145824017-145824017|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.7302856445312	2	544.329142	1086.64373	-2.1	-0.0011431	1.4459	0.00078706	-0.65411	-0.00035605	544.329700268003	52.205	0.40215	51.936	51.76	52.162	-0.26903					27	10	3	0	0	0	0.024506	1	5376	5376		16.473	0	1	446080			27335	9501	18820	18859	31590	31590					0.10387479408132094
INLRELCL	8	Unmodified	_INLRELCL_					0	0	0			REV__ENSG00000183778|ENST00000684187|B3GALT5	REV__ENSG00000183778|ENST00000684187|B3GALT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.30517578125	2	487.278595	972.542637	0.19677	9.5881E-05	3.0281	0.0014755	3.2248	0.0015714	487.2796295475326	19.295	0.59291	19.134	19.034	19.627	-0.16079					13	11	2	0	0	0	0.027866	1	450	450		63.306	0	1	36186	+		27336	27609	18821	18860	31591	31591					0.055267044337597326
INLRQIQVEL	10	Unmodified	_INLRQIQVEL_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.24700927734375	3	409.24695	1224.71902	-0.094716	-3.8762E-05	-0.087119	-3.5653E-05	-0.18183	-7.4415E-05	409.24695290906067	37.484	1.6101	37.421	37.091	38.701	-0.063389					138	44	5	0	0	0	0.56936	1	3071	3071		80.455	9.6384	1	10273000	+		27337	29117	18822	18861	31592	31592					0.11565036868569223
INLSLALDL	9	Unmodified	_INLSLALDL_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|21	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.29217529296875	2	486.292225	970.569897	-0.35508	-0.00017267	-0.38657	-0.00018798	-0.74165	-0.00036066	486.2919999455696	60.048	1.7195	59.848	59.281	61	-0.20016					130	45	6	0	0	0	0.5973	1	6914	6914		52.937	1.6012	1	23652000	+		27338	19465	18823	18862	31593	31593					0.08343511245789159
INLTNEKSGF	10	Unmodified	_INLTNEKSGF_					0	0	0			REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.271240234375	2	561.793121	1121.57169	-0.36647	-0.00020588	0.70296	0.00039492	0.33649	0.00018904	561.793013163812	27.484	0.3763	27.328	27.145	27.521	-0.15664					11	8	2	0	0	0	0.03519	1	1518	1518		30.318	0	1	58372	+		27339	20864	18824	18863	31594	31594					0.0157652026375672
INLYWQVL	8	Unmodified	_INLYWQVL_					0	0	0			REV__ENST00000482061.6_1_3:155481166-155481211:-|nuORF	REV__ENST00000482061.6_1_3:155481166-155481211:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7919921875	2	524.794935	1047.57532	-0.56852	-0.00029836	-4.2425	-0.0022264	-4.811	-0.0025248	524.7927312780023	61.166	1.1639	61.166	60.845	62.009	0					96	30	5	0	0	0	0.52467	2	7054	7054;7089		83.287	11.909	1	7369500	+		27340	33476	18825	18864	31595;31596	31595					0.05343234828296772
INLYWQVL	8	Unmodified	_INLYWQVL_					0	0	0			REV__ENST00000482061.6_1_3:155481166-155481211:-|nuORF	REV__ENST00000482061.6_1_3:155481166-155481211:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7924194335938	2	524.794935	1047.57532	-0.13961	-7.3266E-05	-4.4346	-0.0023272	-4.5742	-0.0024005	524.7925667156934	61.43	1.2235	61.204	60.86	62.084	-0.22663					95	32	4	0	0	0	0.65272	2	7064	7064;7098		71.378	10.406	1	8030000	+		27341	33476	18825	18864	31597;31598	31597					0.05343234828296772
INMGDRSVLAL	11	Unmodified	_INMGDRSVLAL_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	594.8209228515625	2	594.823898	1187.63324	-1.2086	-0.00071888	-2.4301	-0.0014455	-3.6387	-0.0021644	594.8224665292765	53.711	1.8703	53.564	53.132	55.003	-0.14723					150	52	5	0	0	0	0.51994	1	5817	5817		75.043	0.8783	1	12703000	+		27342	24267	18826	18865	31599	31599					0.04693128691428683
INMKFVQDL	9	Unmodified	_INMKFVQDL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.77880859375	2	554.296985	1106.57942	-0.83683	-0.00046385	1.232	0.00068288	0.39514	0.00021903	554.2971839807931	62.592	0.12011	62.592	62.531	62.651	0					4	2	2	0	0	0	0.024263	1	7281	7281		42.396	5.9494	1	90150			27343	6240;18383	18827	18866	31600	31600					0.030389562597065378
INMLVRWY	8	Unmodified	_INMLVRWY_					0	0	0		LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant;nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8197021484375	2	547.794412	1093.57427	-1.5953	-0.00087389	2.8834	0.0015795	1.2881	0.00070561	547.7962381676779	44.079	0.68094	43.935	43.745	44.426	-0.14471					41	19	4	0	0	0	0.027866	1	4198	4198		25.45	0	1	1271900			27344	6802	18828	18867	31601	31601					0.031226971877231335
INMSDEQNA	9	Unmodified	_INMSDEQNA_					0	0	0			REV__HUWE1|p.R2400Q|1|0.17|ENSG00000086758|chrX:53562836-53562836|C/T|missense_variant	REV__HUWE1|p.R2400Q|1|0.17|ENSG00000086758|chrX:53562836-53562836|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2870178222656	2	511.216388	1020.41822	1.4186	0.00072519	-4.432	-0.0022657	-3.0134	-0.0015405	511.21390066280713	58.985	0.46502	58.798	58.611	59.076	-0.18705					16	12	2	0	0	0	0.024511	1	6664	6664		32.812	0.85756	1	136050	+		27345	36139	18829	18868	31602	31602					-0.09116837844203474
INMSIPIVL	9	Unmodified	_INMSIPIVL_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3131408691406	2	500.298996	998.583439	-0.14219	-7.1138E-05	-2.9946	-0.0014982	-3.1368	-0.0015693	500.29782594242954	76.251	0.31992	76.251	76.071	76.391	0					5	4	2	0	0	0	0.024292	1	9413	9413		58.782	4.0056	1	202400			27346	10169	18830	18869	31603	31603					0.08409045753398914
INMTEKNPF	9	Unmodified	_INMTEKNPF_					0	0	0			REV__nc|ENSG00000073605|Q8TAX9-6|GSDMB	REV__nc|ENSG00000073605|Q8TAX9-6|GSDMB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.310302734375	2	547.270967	1092.52738	-0.28315	-0.00015496	-4.113	-0.0022509	-4.3962	-0.0024059	547.2704645146458	63.662	0.1842	63.434	63.328	63.512	-0.22773					6	4	2	0	0	0	0.024263	1	7191	7191		51.335	23.453	1	81691	+		27347	20503	18831	18870	31604	31604					-0.015182071540948527
INNDLVYL	8	Unmodified	_INNDLVYL_					0	0	0			REV__ENSG00000009694|ENST00000371130|TENM1	REV__ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2625732421875	2	482.260925	962.507297	-0.42737	-0.0002061	0.89587	0.00043204	0.46849	0.00022594	482.26118828518383	66.431	1.3233	66.461	66.237	67.56	0.030106					88	35	3	0	0	0	0.94517	1	7830	7830		45.952	0	1	3955500	+		27348	19893	18832	18871	31605	31605					0.02454365177618456
INNHPNISID	10	Unmodified	_INNHPNISID_					0	0	0			REV__nc|ENSG00000107758|P16298-2|PPP3CB	REV__nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3111572265625	2	568.78837	1135.56219	-0.32489	-0.00018479	0.3198	0.0001819	-0.0050889	-2.8945E-06	569.2890521219022	31.374	0.52765	31.222	31.006	31.534	-0.15231					15	13	2	0	0	0	0.03519	1	2079	2079		14.137	0	1	141300	+		27349	36553	18833	18872	31606	31606					-0.00017248021754312504
INNIERNV	8	Unmodified	_INNIERNV_					0	0	0		ENST00000540889.1_1_12:131283048-131285998:-|nuORF;nc|ENSG00000111450|P32856-3|STX2;nc|ENSG00000111450|P32856-2|STX2;ENSG00000111450|ENST00000392373|STX2	ENST00000540889.1_1_12:131283048-131285998:-|nuORF	ENST00000540889.1_1_12:131283048-131285998:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31292724609375	2	486.267073	970.519593	0.15616	7.5935E-05	-4.049	-0.0019689	-3.8929	-0.001893	486.2651635118162	39.722	0.49287	39.722	39.495	39.988	0					33	13	3	0	0	0	0.027866	1	3477	3477		57.811	13.694	1	896490			27350	3117	18834	18873	31607	31607					0.033154016406683695
INNISENSSSV	11	Unmodified	_INNISENSSSV_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.2813720703125	2	582.280574	1162.5466	-0.30324	-0.00017657	0.9023	0.00052539	0.59905	0.00034882	582.280954414479	49.383	0.94369	49.283	48.918	49.861	-0.1008					57	24	3	0	0	0	0.73399	1	4964	4964		61.691	1.573	1	2478500			27351	2521	18835	18874	31608	31608					-0.028175793294849427
INNKVVQLH	9	Unmodified	_INNKVVQLH_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7901000976562	2	532.81419	1063.61383	-0.41622	-0.00022177	-0.44391	-0.00023652	-0.86013	-0.00045829	532.8138542858464	55.935	0.38924	55.935	55.715	56.104	0					17	10	2	0	0	0	0.024487	1	6226	6226		24.203	0	1	448500			27352	1482	18836	18875	31609	31609					0.0845654046281652
INNNSWKGTT	10	Unmodified	_INNNSWKGTT_					0	0	0			REV__ENSG00000196131|ENST00000341702|VN1R2	REV__ENSG00000196131|ENST00000341702|VN1R2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.25439453125	2	567.780544	1133.54654	-0.36434	-0.00020687	0.11596	6.5842E-05	-0.24838	-0.00014102	567.7806241312752	31.046	0.45734	30.805	30.497	30.954	-0.24109					14	10	2	0	0	0	0.03519	1	2021	2021		23.523	0	1	71454	+		27353	28130	18837	18876	31610	31610					-0.014895345388140413
INNQSPREI	9	Unmodified	_INNQSPREI_					0	0	0			REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3118896484375	2	535.783087	1069.55162	1.2768	0.00068408	1.1069	0.00059306	2.3837	0.0012771	535.7841547208683	59.235	0.46569	59.048	58.866	59.331	-0.18705					18	12	2	0	0	0	0.023239	1	6751	6751		74.255	26.598	1	173940	+		27354	20360	18838	18877	31611	31611					0.01962769323813518
INNRIASEL	9	Unmodified	_INNRIASEL_					0	0	0		ENSG00000177181|ENST00000431473|RIMKLA	ENSG00000177181|ENST00000431473|RIMKLA	ENSG00000177181|ENST00000431473|RIMKLA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2611083984375	2	515.288005	1028.56146	-1.5027	-0.00077431	1.2682	0.0006535	-0.23445	-0.00012081	515.28864864475	30.047	0.417	30.121	29.92	30.337	0.074314					21	9	3	0	0	0	0.024457	1	1823	1823		29.15	6.1071	1	275120			27355	8718	18839	18878	31612	31612					0.04831957329201941
INNSYLMVI	9	Unmodified	_INNSYLMVI_					0	0	0		nc|ENSG00000293488|Q8IZS7|CLECL1P	nc|ENSG00000293488|Q8IZS7|CLECL1P	nc|ENSG00000293488|Q8IZS7|CLECL1P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7977905273438	2	533.78371	1065.55287	-0.12571	-6.7102E-05	1.042	0.00055618	0.91625	0.00048908	533.7845280712339	55.166	0.098679	55.166	55.083	55.182	0					4	2	2	0	0	0	0.024457	1	6081	6081		45.952	25.955	1	53748			27356	18847	18840	18879	31613	31613					0.02271267368359986
INNYHSTV	8	Unmodified	_INNYHSTV_					0	0	0			REV__nc|ENSG00000104231|Q8TCF1-4|ZFAND1	REV__nc|ENSG00000104231|Q8TCF1-4|ZFAND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7845458984375	2	474.232699	946.450845	-0.71025	-0.00033682	0.84859	0.00040243	0.13835	6.5609E-05	474.2328695599534	34.541	0.56199	34.366	34.05	34.612	-0.17557					19	13	2	0	0	0	0.027866	1	2519	2519		24.203	0	1	131330	+		27357	36530	18841	18880	31614	31614					-0.0245226265905103
INPAMDFTQT	10	Unmodified	_INPAMDFTQT_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2676391601562	2	569.265881	1136.51721	0.70277	0.00040006	2.5436	0.001448	3.2463	0.001848	569.267209417792	18.775	2.752	18.618	17.605	20.357	-0.15637					109	55	4	0	0	0	1.1307	1	317	317		26.693	1.1189	1	212390			27358	1251	18842	18881	31615	31615					-0.04558814879305828
INPFAPSR	8	Unmodified	_INPFAPSR_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.76080322265625	2	451.248152	900.481751	-0.28261	-0.00012753	3.858	0.0017409	3.5754	0.0016134	451.24980836562884	38.789	0.88196	38.564	37.82	38.702	-0.2257					42	24	2	0	0	0	0.027866	1	3222	3222		25.45	0	1	275460			27359	2142	18843	18882	31616	31616					0.02752935445857929
INPFKLELP	9	Unmodified	_INPFKLELP_					0	0	0			REV__nc|ENSG00000100490|Q00532-3|CDKL1	REV__nc|ENSG00000100490|Q00532-3|CDKL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.296630859375	2	535.815867	1069.61718	-0.76076	-0.00040763	-2.1521	-0.0011531	-2.9128	-0.0015607	536.3154119384271	74.924	1.5882	74.935	73.881	75.47	0.010368					84	38	4	0	0	0	0.023239	1	9051	9051		96.19	19.416	1	451710	+		27360	21126	18844	18883	31617	31617					0.08515790516798916
INPHRLRN	8	Unmodified	_INPHRLRN_					0	0	0			REV__ENSG00000107140|ENST00000336395|TESK1	REV__ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.3102111816406	2	510.296499	1018.57845	-0.41963	-0.00021413	-0.42373	-0.00021623	-0.84336	-0.00043036	510.2967334740167	77.346	1.0853	77.359	77.187	78.272	0.013496					36	25	2	0	0	0	0.027866	1	9492	9492		31.955	0	1	156070	+		27361	21654	18845	18884	31618	31618					0.06989922725642828
INPLSLVAM	9	Unmodified	_INPLSLVAM_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2779541015625	2	479.275521	956.536489	0.1691	8.1046E-05	3.582	0.0017168	3.7511	0.0017978	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.92825	1	9877	9877		30.504	0.6621	1	1990900	+		27362	23836	18846	18885	31619	31619					0.05648186202245142
INPPQAAII	9	Unmodified	_INPPQAAII_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30548095703125	2	468.779285	935.544017	-0.39983	-0.00018743	3.2729	0.0015343	2.8731	0.0013468	468.7806720608429	62.013	0.62703	62.013	61.453	62.08	0					17	16	2	0	0	0	0.024294	1	7189	7189		29.15	6.1071	1	86528	+		27363	28725	18847	18886	31620	31620					0.07366661794185347
INPSPPVSL	9	Unmodified	_INPSPPVSL_					0	0	0			REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.28741455078125	2	462.263468	922.512382	0.82557	0.00038163	-0.29196	-0.00013496	0.53361	0.00024667	462.2631793508321	59.137	1.0196	59.223	58.813	59.833	0.085682					54	27	3	0	0	0	0.022587	1	6677	6677		54.776	10.66	1	752470	+		27364	19675	18848	18887	31621	31621					0.04802669040236651
INPTLPRVG	9	Unmodified	_INPTLPRVG_					0	0	0		ENSG00000175535|ENST00000369221|PNLIP	ENSG00000175535|ENST00000369221|PNLIP	ENSG00000175535|ENST00000369221|PNLIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7670593261719	2	483.790184	965.565815	-0.71364	-0.00034525	0.64981	0.00031437	-0.063827	-3.0879E-05	483.7902466870811	35.072	0.32764	35.116	34.977	35.305	0.044056					11	8	2	0	0	0	0.024263	1	2616	2616		60.972	0	1	60997			27365	8569	18849	18888	31622	31622					0.08165466542766353
INPVMSVPRA	10	Unmodified	_INPVMSVPRA_					0	0	0			REV__ENSG00000170653|ENST00000420353|ATF7	REV__ENSG00000170653|ENST00000420353|ATF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.3009643554688	2	542.302601	1082.59065	-1.2674	-0.00068734	-2.3391	-0.0012685	-3.6066	-0.0019558	542.3013244225551	65.08	0.63985	64.825	64.504	65.144	-0.25563					30	15	2	0	0	0	0.77808	1	7420	7420		62.107	1.1355	1	4543200	+		27366	26492	18850	18889	31623	31623					0.05265778353850692
INPYQPAP	8	Unmodified	_INPYQPAP_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENST00000506347.2_1_4:39975255-39975922:+|nuORF;ENST00000471997.1_1_2:147345807-147346347:+|nuORF	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76129150390625	2	450.23471	898.454868	-0.43388	-0.00019535	1.6977	0.00076437	1.2638	0.00056902	450.2346343831868	39.263	0.25679	39.099	38.971	39.228	-0.16458					9	6	2	0	0	0	0.027866	1	3298	3298		26.796	3.7536	1	31586			27367	1434	18851	18890	31624	31624					0.001578268346634104
INQAGPHL	8	Unmodified	_INQAGPHL_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.2562561035156	2	425.232502	848.450451	-1.3478	-0.00057313	2.196	0.0009338	0.84818	0.00036067	425.23373375853043	36.069	0.8748	36.069	35.531	36.406	0					56	23	4	0	0	0	0.027866	1	2754	2754		20.482	0	1	597510	+		27368	22475	18852	18891	31625	31625					0.020163624117685686
INQALRVAQ	9	Unmodified	_INQALRVAQ_					0	0	0			REV__ENSG00000166170|ENST00000299204|BAG5	REV__ENSG00000166170|ENST00000299204|BAG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2959289550781	2	506.79854	1011.58253	0.74664	0.0003784	-0.025327	-1.2836E-05	0.72131	0.00036556	506.7983948364288	98.079	1.4683	98.077	96.924	98.392	-0.0020752					40	33	2	0	0	0	0.024457	1	12433	12433		15.642	0	1	103180	+		27369	25985	18853	18892	31626	31626					0.07719967428704422
INQGVYEI	8	Unmodified	_INQGVYEI_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;REV__ENSG00000099381|ENST00000262519|SETD1A	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.268310546875	2	468.245275	934.475997	-1.2464	-0.00058361	1.93	0.00090371	0.68362	0.0003201	468.24612584161775	60.403	0.63527	60.482	60.049	60.684	0.078888					22	16	2	0	0	0	0.027866	1	6870	6870		53.351	0	1	250740	+		27370	23961;21005	18854	18893	31627	31627					0.006137921435083626
INQHALTQ	8	Unmodified	_INQHALTQ_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.2947998046875	2	462.748516	923.482479	-0.65021	-0.00030088	-1.5038	-0.0006959	-2.154	-0.00099678	462.74574910813163	49.018	0.39717	48.738	48.394	48.791	-0.27977					14	10	2	0	0	0	0.027866	1	4829	4829		5.9211	0	1	327220	+		27371	24423	18855	18894	31628	31628					0.01767730094888975
INQHKRCP	8	Unmodified	_INQHKRCP_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.3212890625	2	498.26381	994.513068	-0.2688	-0.00013393	-3.9808	-0.0019835	-4.2496	-0.0021174	498.26183379575383	49.246	0.61257	49.093	48.792	49.405	-0.15277					24	16	2	0	0	0	0.027866	1	5009	5009		42.474	7.2737	1	202350			27372	1707	18856	18895	31629	31629					0.015591852082934565
INQIRKTF	8	Unmodified	_INQIRKTF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.80108642578125	2	510.303458	1018.59236	-0.0035003	-1.7862E-06	1.2513	0.00063855	1.2478	0.00063676	510.3043639255754	88.327	0.41429	88.19	87.901	88.315	-0.13744					18	9	3	0	0	0	0.027866	1	10744	10744		55.504	2.1528	1	165550	+		27373	25017	18857	18896	31630	31630					0.08381155434096854
INQKGMLIL	9	Unmodified	_INQKGMLIL_					0	0	0			REV__ENSG00000137492|ENST00000260045|THAP12	REV__ENSG00000137492|ENST00000260045|THAP12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3114013671875	2	515.309895	1028.60524	0.58825	0.00030313	2.9482	0.0015192	3.5364	0.0018223	515.3112551016712	18.629	0.791	18.472	18.148	18.939	-0.15637					25	15	3	0	0	0	0.78069	1	330	330		40.573	1.7665	1	181170	+		27374	23760	18858	18897	31631	31631					0.0920785050197992
INQLAFGID	9	Unmodified	_INQLAFGID_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2603454589844	2	495.766374	989.518196	-0.96896	-0.00048038	-3.5017	-0.001736	-4.4706	-0.0022164	495.764683836373	29.52	0.76111	29.52	29.296	30.057	0					32	18	2	0	0	0	0.024381	1	1827	1827		45.952	34.441	1	211110			27375	5194	18859	18898	31632	31632					0.023017675519099612
INQQKEPGLA	10	Unmodified	_INQQKEPGLA_					0	0	0			REV__nc|ENSG00000203705|Q17R31-5|TATDN3	REV__nc|ENSG00000203705|Q17R31-5|TATDN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3025512695312	2	549.301113	1096.58767	-0.61843	-0.0003397	3.7717	0.0020718	3.1533	0.0017321	549.3031625449072	78.887	1.7112	78.695	78.298	80.009	-0.1921					129	40	6	0	0	0	0.98754	1	9791	9791		47.657	1.6851	1	14463000	+		27376	37071	18860	18899	31633	31633					0.04324226500671102
INQQRPRSKT	10	Unmodified	_INQQRPRSKT_					0	0	0		nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENSG00000167216|ENST00000683218|KATNAL2	nc|ENSG00000167216|Q8IYT4-2|KATNAL2	nc|ENSG00000167216|Q8IYT4-2|KATNAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.5423278808594	3	409.902065	1226.68437	0.43912	0.00018	-0.15633	-6.4079E-05	0.28279	0.00011592	409.90191308195244	22.579	0.32249	22.377	22.146	22.468	-0.20198					13	6	3	0	0	0	0.03519	1	763	763		5.6988	0	1	26573			27377	7661	18861	18900	31634	31634					0.08009213780451319
INQQSQFE	8	Unmodified	_INQQSQFE_					0	0	0			REV__nc|ENSG00000075292|Q14966-4|ZNF638	REV__nc|ENSG00000075292|Q14966-4|ZNF638	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.3072204589844	2	497.235439	992.456324	-0.75491	-0.00037537	4.0799	0.0020287	3.325	0.0016533	497.23733536604374	21.952	1.5299	21.75	21.031	22.561	-0.20199					49	31	2	0	0	0	0.027866	1	724	724		87.754	21.951	1	42446	+		27378	20543	18862	18901	31635	31635					-0.04020583867225014
INQVLKSSK	9	Unmodified	_INQVLKSSK_					0	0	0			REV__ENSG00000131016|ENST00000402676|AKAP12	REV__ENSG00000131016|ENST00000402676|AKAP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.298583984375	2	508.808574	1015.60259	-0.49339	-0.00025104	0.15804	8.041E-05	-0.33535	-0.00017063	508.80837111702465	27.108	0.46697	26.952	26.758	27.225	-0.15664					16	10	2	0	0	0	0.024541	1	1416	1416		19.997	0	1	138880	+		27379	23177	18863	18902	31636	31636					0.09541718368666352
INQYSRRRMYW	11	Unmodified	_INQYSRRRMYW_					0	0	0			REV__nc|ENSG00000158485|P29016-2|CD1B	REV__nc|ENSG00000158485|P29016-2|CD1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7877807617188	3	524.93326	1571.77795	-0.21109	-0.00011081	-0.31219	-0.00016388	-0.52328	-0.00027469	524.9334412465519	29.188	0.67534	29.038	28.743	29.418	-0.14952					35	15	4	0	0	0	0.024873	1	1777	1777		6.001	0	1	134050	+		27380	25200	18864	18903	31637	31637					0.014931898912436736
INRALKEN	8	Unmodified	_INRALKEN_					0	0	0		ENSG00000069248|ENST00000261396|NUP133;NUP133|p.T387Mfs*2|1|0.39|ENSG00000069248|chr1:229489989-229489989|G/-|frameshift_variant	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2778015136719	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	1.0009	1	10087	10087		37.159	1.5408	1	7407200			27381	1399	18865	18904	31638	31638					0.060319920203255606
INRFPWPK	8	Unmodified	_INRFPWPK_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2728881835938	2	529.300719	1056.58688	-0.19546	-0.00010346	3.0343	0.0016061	2.8389	0.0015026	529.3005350081899	46.169	0.30869	46.221	45.965	46.274	0.051395					14	8	2	0	0	0	0.027866	1	4448	4448		60.294	7.9948	1	112740			27382	6714	18866	18905	31639	31639					0.06085476642260801
INRLVKRKAN	10	Unmodified	_INRLVKRKAN_					0	0	0			REV__ENSG00000163982|ENST00000296358|OTOP1	REV__ENSG00000163982|ENST00000296358|OTOP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.3875122070312	2	606.388388	1210.76222	-0.2035	-0.0001234	-0.97724	-0.00059259	-1.1807	-0.00071599	606.3875171274191	107.31	0.4583	107.31	106.98	107.44	-0.003479					32	14	3	0	0	0	1.1329	1	13732	13732		27.882	2.3082	1	193720	+		27383	25666	18867	18906	31640	31640					0.165272714365301
INRPATNI	8	Unmodified	_INRPATNI_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.75885009765625	2	449.758884	897.503215	-0.81742	-0.00036764	0.39944	0.00017965	-0.41798	-0.00018799	449.7590709348939	44.762	1.1944	44.614	44.288	45.483	-0.1488					107	34	4	0	0	0	0.56592	2	4268	4257;4268		79.451	5.4763	1	13532000	+		27384	26473	18868	18907	31641;31642	31642					0.05036320474550848
INRPATNI	8	Unmodified	_INRPATNI_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7584228515625	2	449.758884	897.503215	-0.17865	-8.0348E-05	-0.22183	-9.9772E-05	-0.40048	-0.00018012	449.7587851634818	44.66	1.2673	44.697	44.306	45.573	0.0369					103	36	4	0	0	0	0.44658	6	4216	4196;4206;4216;4228;4242;4254		90.777	5.4806	1	13619000	+		27385	26473	18868	18907	31643;31644;31645;31646;31647;31648	31645					0.05036320474550848
INRPPLLL	8	Unmodified	_INRPPLLL_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.30633544921875	2	468.30547	934.596387	-0.75523	-0.00035368	-0.01508	-7.062E-06	-0.77031	-0.00036074	468.3054831230446	61.988	0.80659	61.988	61.529	62.335	0					76	23	5	0	0	0	0.56067	2	7167	7167;7201		79.939	14.042	1	45601000	+		27386	20017	18869	18908	31649;31650	31649					0.12647244927802603
INRPPLLL	8	Unmodified	_INRPPLLL_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.305908203125	2	468.30547	934.596387	-0.27594	-0.00012923	-0.68264	-0.00031968	-0.95859	-0.00044891	468.3051649520783	62.223	1.9745	61.996	61.495	63.469	-0.22663					102	54	5	0	0	0	0.65272	2	7172	7172;7204		71.378	8.0716	1	45322000	+		27387	20017	18869	18908	31651;31652	31651					0.12647244927802603
INRPPLLL	8	Unmodified	_INRPPLLL_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.3050231933594	2	468.30547	934.596387	-0.14446	-6.7653E-05	-0.86869	-0.00040681	-1.0132	-0.00047447	468.3050202581613	61.906	1.6994	61.968	61.542	63.242	0.062767					95	44	5	0	0	0	0.65272	1	7112	7112		71.378	8.0716	1	43419000	+		27388	20017	18869	18908	31653	31653					0.12647244927802603
INRPVVEA	8	Unmodified	_INRPVVEA_					0	0	0		ENST00000432568.1_1_22:30443855-30446524:-|nuORF;ENST00000453743.6_1_22:30414646-30446524:-|nuORF;ENST00000429350.5_1_22:30414646-30446524:-|nuORF	ENST00000432568.1_1_22:30443855-30446524:-|nuORF	ENST00000432568.1_1_22:30443855-30446524:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.26171875	2	449.261259	896.507966	-0.35006	-0.00015727	0.65826	0.00029573	0.3082	0.00013846	449.2613520695654	31.331	0.771	31.178	30.724	31.495	-0.15231					37	19	2	0	0	0	0.56067	1	2065	2065		79.939	5.9645	1	1383100			27389	14143	18870	18909	31654	31654					0.05557204617332445
INRRLKLL	8	Unmodified	_INRRLKLL_					0	0	0			REV__ENST00000562946.5_1_15:42519884-42565596:-|nuORF	REV__ENST00000562946.5_1_15:42519884-42565596:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2847290039062	2	513.350743	1024.68693	-1.0295	-0.00052847	4.0799	0.0020944	3.0505	0.001566	513.3527649922594	61.796	0.17687	61.858	61.806	61.983	0.062767					6	4	2	0	0	0	0.027866	1	7083	7083		26.796	6.3143	1	83306	+		27390	21409	18871	18910	31655	31655					0.17557713976088962
INRTLQCW	8	Unmodified	_INRTLQCW_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3237915039062	2	517.266019	1032.51748	0.30813	0.00015938	-1.5846	-0.00081967	-1.2765	-0.00066029	517.2650614337514	50.878	0.6017	50.767	50.488	51.09	-0.11163					29	15	2	0	0	0	0.027866	1	5155	5155		35.618	18.253	1	693730	+		27391	27316	18872	18911	31656	31656					0.0025264963119298045
INSAWVPL	8	Unmodified	_INSAWVPL_					0	0	0			REV__nc|ENSG00000198881|Q8WXK4|ASB12	REV__nc|ENSG00000198881|Q8WXK4|ASB12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2510070800781	2	450.252903	898.491253	-0.33542	-0.00015102	-3.7963	-0.0017093	-4.1317	-0.0018603	450.2509766804257	35.32	0.88397	35.364	35.014	35.898	0.04406					80	22	5	0	0	0	0.71717	1	2663	2663		65.897	0.094285	1	2161000	+		27392	28506	18873	18912	31657	31657					0.03794703731375648
INSEKVKPV	9	Unmodified	_INSEKVKPV_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.813720703125	2	507.303124	1012.5917	-0.52116	-0.00026439	-1.6879	-0.00085629	-2.2091	-0.0011207	507.30283893119974	76.968	0.24577	76.74	76.526	76.772	-0.22843					7	5	2	0	0	0	0.024319	1	9456	9456		47.657	0	1	93997	+		27393	21420	18874	18913	31658	31658					0.0859031599438822
INSHNGVPVI	10	Unmodified	_INSHNGVPVI_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2874145507812	2	525.290548	1048.56654	0.09903	5.2019E-05	-3.2495	-0.001707	-3.1505	-0.0016549	525.2890490746128	82.166	0.68343	81.985	81.56	82.244	-0.18079					25	15	2	0	0	0	0.03519	1	9918	9918		31.53	6.0796	1	152680	+		27394	26014	18875	18914	31659	31659					0.04420261191808095
INSIIQVAV	9	Unmodified	_INSIIQVAV_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7922058105469	2	478.792392	955.570232	0.67364	0.00032254	-0.7126	-0.00034119	-0.038956	-1.8652E-05	478.7918586739343	50.85	0.5965	50.669	50.426	51.023	-0.18071					35	15	3	0	0	0	0.45795	1	5190	5190		62.107	7.3311	1	1949600	+		27395	19998	18876	18915	31660	31660					0.09066930965661868
INSLLAMEV	9	Unmodified	_INSLLAMEV_					0	0	0			REV__ENST00000490746.5_1_2:75696479-75749569:-|nuORF	REV__ENST00000490746.5_1_2:75696479-75749569:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.31536865234375	2	495.270435	988.526318	-0.5813	-0.0002879	0.55271	0.00027374	-0.028597	-1.4163E-05	495.27058432166643	81.413	0.84692	81.283	80.936	81.783	-0.13075					37	20	2	0	0	0	0.024523	1	10063	10063		21.96	0	1	124930	+		27396	22196	18877	18916	31661	31661					0.031595784770274804
INSLLAMEV	9	Unmodified	_INSLLAMEV_					0	0	0			REV__ENST00000490746.5_1_2:75696479-75749569:-|nuORF	REV__ENST00000490746.5_1_2:75696479-75749569:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.270435	988.526318	-0.078567	-3.8912E-05	-0.39972	-0.00019797	-0.47828	-0.00023688	495.27017349077755	81.609	0.45169	81.609	81.299	81.751	0	0.23044	-0.00083334	NaN	21.96	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109610	+		27397	22196	18877	18916							0.031595784770274804
INSNLAATM	9	Unmodified	_INSNLAATM_					0	0	0			REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.7388000488281	2	467.73676	933.458967	0.35126	0.0001643	4.0463	0.0018926	4.3975	0.0020569	467.7385270756243	23.524	1.4235	23.322	22.499	23.923	-0.20193					63	31	3	0	0	0	0.70156	1	950	950		45.972	1.4412	1	939990	+		27398	25435	18878	18917	31662	31662					-0.010424517339401973
INSNLAATM	9	Unmodified	_INSNLAATM_					0	0	0			REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	467.73676	933.458967	0.35126	0.0001643	4.0463	0.0018926	4.3975	0.0020569	467.7385270756243	23.524	1.4235	23.322	22.499	23.923	-0.20193	-0.023877	0.0002396	NaN	45.972	63	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939990	+		27399	25435	18878	18917							-0.010424517339401973
INSNLAATM	9	Unmodified	_INSNLAATM_					0	0	0			REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	467.73676	933.458967	1.5616	0.00073041	2.6851	0.0012559	4.2466	0.0019863	467.73790477327725	23.529	0.89369	23.338	23.079	23.973	-0.19117	-0.0080652	-0.0010338	NaN	45.972	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1882100	+		27400	25435	18878	18917							-0.010424517339401973
INSPYGKFL	9	Unmodified	_INSPYGKFL_					0	0	0			REV__ENSG00000140006|ENST00000620954|WDR89	REV__ENSG00000140006|ENST00000620954|WDR89	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7616577148438	2	519.784567	1037.55458	-0.20633	-0.00010725	3.2371	0.0016826	3.0308	0.0015754	519.7867427887984	55.836	0.41069	55.68	55.404	55.814	-0.15602					14	10	2	0	0	0	0.024405	1	6178	6178		20.947	4.4738	1	105120	+		27401	23982	18879	18918	31663	31663					0.03730644448637577
INSSSDALEP	10	Unmodified	_INSSSDALEP_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.284912109375	2	516.745836	1031.47712	-0.59807	-0.00030905	-0.47924	-0.00024765	-1.0773	-0.0005567	517.2469339008968	52.546	0.51356	52.419	52.118	52.632	-0.12706					28	12	3	0	0	0	0.03519	1	5480	5480		47.657	14.142	1	192880	+		27402	36756	18880	18919	31664	31664					-0.03736038278225351
INSTRIHI	8	Unmodified	_INSTRIHI_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.2798156738281	2	477.279983	952.545414	-0.75543	-0.00036055	0.40323	0.00019245	-0.3522	-0.0001681	477.28020793083056	37.574	0.73011	37.364	36.923	37.653	-0.2092					43	18	4	0	0	0	0.89627	1	3018	3018		51.335	1.8939	1	1621100			27403	4921	18881	18920	31665	31665					0.06724295882941078
INSVSGDMLY	10	Unmodified	_INSVSGDMLY_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2412719726562	2	549.760432	1097.50631	0.2829	0.00015553	1.6323	0.00089739	1.9152	0.0010529	550.2638974483627	49.806	0.11113	49.625	49.57	49.681	-0.18071					4	2	2	0	0	0	0.03519	1	5010	5010		40.778	3.7497	1	77694	+		27404	29177	18882	18921	31666	31666					-0.03854217253569914
INTAPRNI	8	Unmodified	_INTAPRNI_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7590026855469	2	449.758884	897.503215	-0.53805	-0.00024199	0.0014517	6.5291E-07	-0.5366	-0.00024134	449.75889799941183	44.584	1.398	44.584	44.215	45.613	0					110	40	4	0	0	0	0.68164	1	4262	4262		68.787	0	1	13254000			27405	8041	18883	18922	31667	31667					0.05036320474573586
INTCGFLSL	9	Unmodified	_INTCGFLSL_					0	0	0			REV__ENSG00000160445|ENST00000291900|ZER1	REV__ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2497863769531	2	484.249503	966.484453	-0.75021	-0.00036329	1.0219	0.00049486	0.27171	0.00013158	484.24974646650077	79.87	1.4562	79.891	79.316	80.773	0.021439					78	34	3	0	0	0	0.18915	1	9857	9857		90.777	0.40684	1	1769800	+		27406	25321	18884	18923	31668	31668					-0.0001297721150876896
INTILKRY	8	Unmodified	_INTILKRY_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.6335754394531	2	510.813659	1019.61277	0.13779	7.0386E-05	-1.3016	-0.00066489	-1.1638	-0.00059451	510.8126694860608	102.34	0.31102	102.17	101.93	102.24	-0.17178					10	7	2	0	0	0	0.027866	1	12695	12695		25.45	21.134	1	24905	+		27407	20110	18885	18924	31669	31669					0.10374326093904074
INTKIGSP	8	Unmodified	_INTKIGSP_					0	0	0			REV__nc|ENSG00000159479|Q96G25-2|MED8	REV__nc|ENSG00000159479|Q96G25-2|MED8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.2585144042969	2	415.242535	828.470518	-0.69752	-0.00028964	-0.054578	-2.2663E-05	-0.7521	-0.0003123	415.2424246352691	39.038	0.6087	38.814	38.616	39.225	-0.22311					27	16	2	0	0	0	0.027866	1	3239	3239		29.15	0	1	977140	+		27408	36828	18886	18925	31670	31670					0.04942113351705757
INTLNQQL	8	Unmodified	_INTLNQQL_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8046569824219	2	472.263999	942.513445	-0.25497	-0.00012041	1.4118	0.00066672	1.1568	0.00054631	472.2646952843943	55.988	0.86738	56.085	55.819	56.686	0.097893					51	23	3	0	0	0	0.027866	1	6116	6116		80.455	0	1	1498900	+		27409	23220	18887	18926	31671	31671					0.03988883409135724
INTSSYGVLSY	11	Unmodified	_INTSSYGVLSY_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;ENST00000462540.1_1_4:154475378-154479541:+|nuORF;nc|ENSG00000121210|A2VDJ0-6|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.8659362792969	3	401.867916	1202.58192	-1.1643	-0.00046788	-3.8686	-0.0015547	-5.0329	-0.0020226	401.86622458396147	43.484	0.79074	43.258	42.951	43.742	-0.22597					71	21	5	0	0	0	1.0123	1	3961	3961		34.087	2.4522	1	5209300			27410	3857	18888	18927	31672	31672					-0.011269168016497133
INTTLQIL	8	Unmodified	_INTTLQIL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2607421875	2	458.279118	914.543683	0.23506	0.00010772	2.5155	0.0011528	2.7506	0.0012605	458.2810091500167	77.912	0.24875	77.912	77.752	78.001	0					7	5	2	0	0	0	0.027866	1	9632	9632		30.504	0	1	29018			27411	4666	18889	18928	31673	31673					0.08299242074338053
INVAPHLH	8	Unmodified	_INVAPHLH_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.77227783203125	2	450.756144	899.497735	0.93331	0.00042069	3.5081	0.0015813	4.4414	0.002002	450.757807953176	19.779	0.19735	19.579	19.455	19.653	-0.2001					5	3	2	0	0	0	0.027866	1	447	447		28.254	5.2118	1	6810.7			27412	3837	18890	18929	31674	31674					0.043966416827515786
INVEMIRSV	9	Unmodified	_INVEMIRSV_					0	0	0			REV__ENST00000353866.7_1_5:162918148-162918175:+|nuORF	REV__ENST00000353866.7_1_5:162918148-162918175:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3131103515625	2	530.794609	1059.57467	-0.58316	-0.00030954	-2.9454	-0.0015634	-3.5285	-0.0018729	530.7930633522614	64.688	0.67355	64.454	64.216	64.89	-0.2345					30	16	3	0	0	0	0.024427	1	7369	7369		34.173	5.023	1	605710	+		27413	30747	18891	18930	31675	31675					0.047260721169323006
INVETMLIL	9	Unmodified	_INVETMLIL_					0	0	0			REV__ENST00000463046.5_1_2:61435991-61439052:-|nuORF	REV__ENST00000463046.5_1_2:61435991-61439052:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3034057617188	2	523.301736	1044.58892	0.12304	6.4388E-05	3.2645	0.0017083	3.3876	0.0017727	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	0.82115	1	10435	10435		37.812	4.2959	1	3963900	+		27414	32923	18892	18931	31676	31676					0.06840724545213561
INVKSQVL	8	Unmodified	_INVKSQVL_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7793273925781	2	450.779285	899.544017	-0.13074	-5.8934E-05	-0.0095328	-4.2972E-06	-0.14027	-6.3232E-05	450.77907792362157	30.642	0.82892	30.492	30.219	31.048	-0.14952					46	19	4	0	0	0	0.33369	1	1949	1949		106.42	0	1	1281300			27415	3403	18893	18932	31677	31677					0.09022661794188025
INVKTVGV	8	Unmodified	_INVKTVGV_					0	0	0			REV__ENST00000490519.1_1_1:182845328-182845691:+|nuORF	REV__ENST00000490519.1_1_1:182845328-182845691:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2484130859375	2	415.260728	828.506903	-0.74168	-0.00030799	-3.8598	-0.0016028	-4.6015	-0.0019108	415.25941630969453	35.779	0.40792	35.736	35.488	35.896	-0.042458					12	10	2	0	0	0	0.027866	1	2788	2788		60.972	0	1	119230	+		27416	33703	18894	18933	31678	31678					0.08578990248429363
INVLDVNNN	9	Unmodified	_INVLDVNNN_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.792724609375	2	507.764363	1013.51417	0.24848	0.00012617	-3.6256	-0.001841	-3.3771	-0.0017148	507.7623193683564	76.032	0.81302	76.043	75.717	76.53	0.011635					24	20	2	0	0	0	0.02435	1	9249	9249		34.173	6.2903	1	97965	+		27417	28526	18895	18934	31679	31679					0.007956780581935163
INVLKIKRG	9	Unmodified	_INVLKIKRG_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.302978515625	2	520.850576	1039.6866	-2.1324	-0.0011107	1.7704	0.0009221	-0.36204	-0.00018857	520.8513676124329	60.353	0.59461	60.432	60.127	60.722	0.078888					23	15	2	0	0	0	0.024523	1	6898	6898		29.15	1.2673	1	111380	+		27418	23178	18896	18935	31680	31680					0.16834294256204885
INVLLQNN	8	Unmodified	_INVLLQNN_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2802734375	2	464.266542	926.51853	0.7753	0.00035995	-0.14751	-6.8485E-05	0.62779	0.00029146	464.2664824806368	40.848	0.46856	40.725	40.547	41.016	-0.12317					29	12	3	0	0	0	0.027866	1	3615	3615		40.573	7.057	1	519490			27419	6183;18381	18897	18936	31681	31681					0.052331872717559236
INVLMGPDLL	10	Unmodified	_INVLMGPDLL_					0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.8234252929688	2	542.807185	1083.59982	-0.55092	-0.00029904	0.33941	0.00018423	-0.21151	-0.00011481	542.8072489579552	101.47	0.72579	101.3	101.05	101.78	-0.17179					28	15	3	0	0	0	0.03519	1	12640	12640		40.778	0	1	159750	+		27420	27114	18898	18937	31682	31682					0.06136126919500384
INVLPKDD	8	Unmodified	_INVLPKDD_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2891845703125	2	457.2531	912.491647	0.014487	6.6242E-06	-0.57995	-0.00026518	-0.56546	-0.00025856	457.25174947636896	93.794	0.17214	93.646	93.523	93.695	-0.14771					5	3	2	0	0	0	0.027866	1	11538	11538		26.796	0	1	27886			27421	7347	18899	18938	31683	31683					0.03190078660566087
INVMASSQSGL	11	Unmodified	_INVMASSQSGL_					0	0	0			REV__ENST00000519948.3_1_12:74933255-74933441:+|nuORF	REV__ENST00000519948.3_1_12:74933255-74933441:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8297729492188	2	553.779156	1105.54376	-0.049402	-2.7358E-05	-1.5963	-0.00088399	-1.6457	-0.00091134	553.78063227835	86.969	0.37857	86.831	86.574	86.953	-0.13734					10	8	2	0	0	0	0.024765	1	10563	10563		33.922	3.6039	1	33306	+		27422	34281	18900	18939	31684	31684					-0.004791259879539211
INVPVEEK	8	Unmodified	_INVPVEEK_					0	0	0			REV__ENSG00000102271|ENST00000373119|KLHL4	REV__ENSG00000102271|ENST00000373119|KLHL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2696533203125	2	464.260925	926.507297	0.57815	0.00026841	-3.3499	-0.0015552	-2.7718	-0.0012868	464.25919067717876	21.288	0.72375	21.36	21.057	21.781	0.071487					27	14	3	0	0	0	0.027866	1	584	584		23.042	0	1	326410	+		27423	21298	18901	18940	31685	31685					0.041103651776211336
INVQLEKTK	9	Unmodified	_INVQLEKTK_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3423461914062	2	536.821681	1071.62881	-0.87171	-0.00046795	1.714	0.00092009	0.84224	0.00045213	536.8224190632174	27.8	0.53134	27.645	27.351	27.882	-0.15446					24	12	3	0	0	0	0.024447	1	1506	1506		40.778	9.2484	1	163890	+		27424	26976	18902	18941	31686	31686					0.09585987540117458
INVQLEKTK	9	Unmodified	_INVQLEKTK_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.821681	1071.62881	-0.52008	-0.00027919	1.2029	0.00064575	0.68284	0.00036656	536.8223276203554	27.827	0.63232	27.584	27.291	27.924	-0.24288	0.0047833	-0.00041119	NaN	54.776	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102460	+		27425	26976	18902	18941							0.09585987540117458
INVQLEKTK	9	Unmodified	_INVQLEKTK_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.821681	1071.62881	-1.1553	-0.00062018	1.7023	0.00091383	0.54702	0.00029365	536.8225096909583	27.676	0.5346	27.507	27.273	27.808	-0.16816	-0.071409	0.00012496	NaN	54.776	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155680	+		27426	26976	18902	18941							0.09585987540117458
INVQNVLP	8	Unmodified	_INVQNVLP_					0	0	0			REV__nc|ENSG00000243649|P00751-2|CFB	REV__nc|ENSG00000243649|P00751-2|CFB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.23553466796875	2	448.763635	895.512717	0.17425	7.8195E-05	-0.03004	-1.3481E-05	0.14421	6.4714E-05	448.7634495394263	37.524	0.8363	37.331	36.889	37.725	-0.193					44	21	3	0	0	0	0.027866	1	3078	3078		44.531	19.081	1	1447500	+		27427	37163	18903	18942	31687	31687					0.06078088760091305
INVQNVLP	8	Unmodified	_INVQNVLP_					0	0	0			REV__nc|ENSG00000243649|P00751-2|CFB	REV__nc|ENSG00000243649|P00751-2|CFB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.763635	895.512717	1.4656	0.00065773	-2.7274	-0.0012239	-1.2617	-0.00056621	448.76184438598176	37.101	0.55406	37.101	37.005	37.559	0	-0.1143	-0.003018	NaN	62.978	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297720	+		27428	37163	18903	18942							0.06078088760091305
INVQNVLP	8	Unmodified	_INVQNVLP_					0	0	0			REV__nc|ENSG00000243649|P00751-2|CFB	REV__nc|ENSG00000243649|P00751-2|CFB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	448.763635	895.512717	0.51956	0.00023316	-0.49885	-0.00022386	0.020713	9.2952E-06	448.7631397151328	37.023	0.43947	36.959	36.866	37.305	-0.063385	-0.25606	-0.0010179	NaN	62.978	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229770	+		27429	37163	18903	18942							0.06078088760091305
INVQNVLP	8	Unmodified	_INVQNVLP_					0	0	0			REV__nc|ENSG00000243649|P00751-2|CFB	REV__nc|ENSG00000243649|P00751-2|CFB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	448.763635	895.512717	0.020875	9.3678E-06	-0.21677	-9.7281E-05	-0.1959	-8.7913E-05	448.76324834586194	37.141	0.42009	37.173	36.957	37.377	0.032272	-0.042044	-0.0007647	NaN	62.978	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254710	+		27430	37163	18903	18942							0.06078088760091305
INVRGPARVYF	11	Unmodified	_INVRGPARVYF_					0	0	0			REV__GALK2-C15orf43|2|fusion	REV__GALK2-C15orf43|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	646.3665771484375	2	646.367121	1290.71969	-2.1546	-0.0013927	-0.067712	-4.3767E-05	-2.2223	-0.0014364	646.3670544986726	46.371	0.64639	46.274	45.999	46.645	-0.096649					62	17	5	0	0	0	1.0238	1	4445	4445		31.53	0	1	16880000	+		27431	25101	18904	18943	31688	31688					0.08595876308277184
INVRGPARVYF	11	Unmodified	_INVRGPARVYF_					0	0	0			REV__GALK2-C15orf43|2|fusion	REV__GALK2-C15orf43|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	646.367121	1290.71969	-1.1857	-0.00076639	-1.2037	-0.00077804	-2.3894	-0.0015444	646.3662760278257	46.448	0.29099	46.246	46.081	46.372	-0.20226	-0.025215	-0.00016685	NaN	31.53	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154660	+		27432	25101	18904	18943							0.08595876308277184
INVRVLDPF	9	Unmodified	_INVRVLDPF_					0	0	0		TKT|p.I529V|1|0.22|ENSG00000163931|chr3:53226867-53226867|T/C|missense_variant	TKT|p.I529V|1|0.22|ENSG00000163931|chr3:53226867-53226867|T/C|missense_variant	TKT|p.I529V|1|0.22|ENSG00000163931|chr3:53226867-53226867|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3419799804688	2	536.811116	1071.60768	-0.82425	-0.00044247	-2.842	-0.0015256	-3.6662	-0.0019681	536.8094690837784	27.128	0.33377	26.96	26.809	27.142	-0.16816					12	7	2	0	0	0	0.024405	1	1479	1479		53.351	14.545	1	113360			27433	38075	18905	18944	31689	31689					0.07474022231258459
INVTTLVSGP	10	Unmodified	_INVTTLVSGP_					0	0	0		nc|ENSG00000138769|Q92772|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.78765869140625	2	500.787307	999.560061	0.70283	0.00035197	-0.64824	-0.00032463	0.054595	2.734E-05	500.78668967533264	72.184	0.82362	72.193	71.953	72.777	0.0097733					35	20	2	0	0	0	0.59716	1	8714	8714		77.318	9.8239	1	4924000			27434	18325	18906	18945	31690	31690					0.06026323240439524
INWINEEV	8	Unmodified	_INWINEEV_					0	0	0		nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF	nc|ENSG00000138798|P01133-2|EGF	nc|ENSG00000138798|P01133-2|EGF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29254150390625	2	508.756007	1015.49746	-0.17416	-8.8607E-05	4.1392	0.0021059	3.9651	0.0020173	508.758204233455	50.758	0.33235	50.609	50.425	50.758	-0.14916					18	9	2	0	0	0	0.027866	1	5293	5293		53.351	15.54	1	2159300			27435	5288	18907	18946	31691	31691					-0.00966822827751912
INWTAVPL	8	Unmodified	_INWTAVPL_					0	0	0			REV__nc|ENSG00000143771|Q9P003-2|CNIH4	REV__nc|ENSG00000143771|Q9P003-2|CNIH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.7508544921875	2	457.260728	912.506903	-0.30572	-0.00013979	-3.551	-0.0016237	-3.8567	-0.0017635	457.2589588242067	30.116	1.2228	29.872	29.568	30.791	-0.24415					32	28	2	0	0	0	0.027866	1	1889	1889		33.516	0	1	55984	+		27436	24279	18908	18947	31692	31692					0.04714990248419326
INWVVAPI	8	Unmodified	_INWVVAPI_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2250061035156	2	456.271096	910.527639	0.044954	2.0511E-05	-4.486	-0.0020468	-4.4411	-0.0020263	456.26896167478264	51.88	0.50715	51.761	51.54	52.048	-0.11875					29	13	3	0	0	0	0.027866	1	5353	5353		60.294	15.763	1	533630	+		27437	23872	18909	18948	31693	31693					0.06879580628083204
INWVVAPI	8	Unmodified	_INWVVAPI_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.22491455078125	2	456.271096	910.527639	-2.1239	-0.00096906	-2.2539	-0.0010284	-4.3778	-0.0019975	456.26991427429	52.153	0.69286	51.884	51.584	52.277	-0.26903					36	18	3	0	0	0	0.027866	1	5383	5383		79.939	22.128	1	736840	+		27438	23872	18909	18948	31694	31694					0.06879580628083204
INWVVAPI	8	Unmodified	_INWVVAPI_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	456.271096	910.527639	0.43091	0.00019661	-4.5732	-0.0020866	-4.1423	-0.00189	456.2688882389916	51.928	0.98666	51.928	51.568	52.554	0	0.059057	-0.0003932	NaN	60.294	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1935600	+		27439	23872	18909	18948							0.06879580628083204
INWVVAPI	8	Unmodified	_INWVVAPI_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	456.271096	910.527639	-0.096409	-4.3989E-05	-4.4169	-0.0020153	-4.5133	-0.0020593	456.26913068001187	52.075	0.97025	51.928	51.477	52.447	-0.14735	0.058625	-0.00025059	NaN	60.294	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2156800	+		27440	23872	18909	18948							0.06879580628083204
INWVVAPI	8	Unmodified	_INWVVAPI_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.271096	910.527639	-0.65723	-0.00029988	-3.512	-0.0016024	-4.1693	-0.0019023	456.269362641308	51.803	1.0494	51.89	51.511	52.56	0.087006	0.021359	0.00057511	NaN	60.294	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1947700	+		27441	23872	18909	18948							0.06879580628083204
INYGVLDW	8	Unmodified	_INYGVLDW_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2923278808594	2	490.247818	978.481082	-0.72798	-0.00035689	-3.7851	-0.0018556	-4.5131	-0.0022125	490.24583716916976	37.66	0.61514	37.692	37.377	37.992	0.032269					44	16	4	0	0	0	0.027866	1	2983	2983		35.201	9.7505	1	1109400			27442	8705	18910	18949	31695	31695					-0.00901903993860742
INYGVLDW	8	Unmodified	_INYGVLDW_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.247818	978.481082	-0.63406	-0.00031085	-3.8591	-0.0018919	-4.4931	-0.0022028	490.24576555557985	37.65	0.55259	37.65	37.45	38.003	0	0.061442	-2.5011E-05	NaN	60.294	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185900			27443	8705	18910	18949							-0.00901903993860742
INYGVLDW	8	Unmodified	_INYGVLDW_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.247818	978.481082	-0.60291	-0.00029557	-3.858	-0.0018914	-4.4609	-0.002187	490.2457406158625	37.486	0.56351	37.423	37.198	37.762	-0.063385	-0.16532	-2.3989E-05	NaN	60.294	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	969820			27444	8705	18910	18949							-0.00901903993860742
INYLVECAF	9	Unmodified	_INYLVECAF_					0	0	0			REV__ENSG00000116701|ENST00000367535|NCF2	REV__ENSG00000116701|ENST00000367535|NCF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7850341796875	2	536.26261	1070.51067	-0.5363	-0.0002876	-3.4794	-0.0018659	-4.0157	-0.0021535	536.2626039146251	55.657	0.61785	55.501	55.16	55.778	-0.15601					29	16	3	0	0	0	0.024487	1	6142	6142		17.365	9.1337	1	169060	+		27445	22293	18911	18950	31696	31696					-0.021767080400422856
INYQWVKFDV	10	Unmodified	_INYQWVKFDV_					0	0	0		nc|ENSG00000154144|Q3YBR2-3|TBRG1;ENST00000438907.3_1_11:124496635-124502131:+|nuORF;nc|ENSG00000154144|Q3YBR2-2|TBRG1;ENSG00000154144|ENST00000441174|TBRG1	nc|ENSG00000154144|Q3YBR2-3|TBRG1	nc|ENSG00000154144|Q3YBR2-3|TBRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.2447509765625	3	437.895917	1310.66592	-0.11184	-4.8976E-05	-4.1766	-0.0018289	-4.2884	-0.0018779	437.8930322873809	27.948	0.41749	28.029	27.872	28.289	0.081291					13	9	2	0	0	0	0.03519	1	1537	1537		25.126	0	1	61745			27446	6387	18912	18951	31697	31697					0.023016590858787822
INYTRAIVD	9	Unmodified	_INYTRAIVD_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	532.790381	1063.56621	-0.87214	-0.00046467	-2.2454	-0.0011963	-3.1175	-0.001661	532.7892403024016	85.08	0.5393	85.106	84.871	85.41	0.025536					20	12	2	0	0	0	0.024495	1	10615	10615		26.693	11.057	1	245100	+		27447	20017	18913	18952	31698	31698					0.036968414719467546
IPAALQEPTL	10	Unmodified	_IPAALQEPTL_					0	0	0			REV__ENSG00000013503|ENST00000228347|POLR3B	REV__ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2388305664062	2	526.802957	1051.59136	-0.73837	-0.00038898	0.17614	9.2793E-05	-0.56223	-0.00029618	526.8027548929276	56.384	0.29129	56.219	56.058	56.35	-0.16431					13	7	2	0	0	0	0.03519	1	6267	6267		37.812	4.9991	1	319670	+		27448	19958	18914	18953	31699	31699					0.06762896274517516
IPAEGRVAL	9	Unmodified	_IPAEGRVAL_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2770690917969	2	463.276909	924.539266	-0.057373	-2.658E-05	-0.11574	-5.3621E-05	-0.17312	-8.0201E-05	463.27671444011327	47.057	1.4004	47.057	46.378	47.779	0					89	39	4	0	0	0	0.10174	3	4683	4671;4683;4694		110.12	21.477	1	6464400			27449	13216	18915	18954	31700;31701;31702	31701					0.07397777651419801
IPAEGRVAL	9	Unmodified	_IPAEGRVAL_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.2769775390625	2	463.276909	924.539266	0.31896	0.00014777	-0.46242	-0.00021423	-0.14346	-6.6462E-05	463.2765371280349	47.175	1.518	47.022	46.309	47.827	-0.15301					92	42	4	0	0	0	0.2508	3	4681	4671;4681;4693		82.241	10.945	1	5614400			27450	13216	18915	18954	31703;31704;31705	31704					0.07397777651419801
IPAEGRVAL	9	Unmodified	_IPAEGRVAL_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.27716064453125	2	463.276909	924.539266	0.17604	8.1557E-05	-0.33645	-0.00015587	-0.1604	-7.4311E-05	463.2766173278001	46.99	1.2924	47.049	46.416	47.708	0.059097					83	36	4	0	0	0	0.2508	3	4624	4603;4612;4624		82.241	10.888	1	6407800			27451	13216	18915	18954	31706;31707;31708	31708					0.07397777651419801
IPAGFPNPPS	10	Unmodified	_IPAGFPNPPS_					0	0	0		ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.83154296875	2	498.761092	995.507631	-1.2933	-0.00064506	0.0011063	5.5176E-07	-1.2922	-0.00064451	498.760971787567	44.329	0.45471	44.11	43.936	44.391	-0.21939					16	12	2	0	0	0	0.03519	1	4155	4155		71.296	13.484	1	164120			27452	10353	18916	18955	31709	31709					0.009697848974610679
IPAGVSIY	8	Unmodified	_IPAGVSIY_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.91558837890625	2	410.234179	818.453805	0.2885	0.00011835	-3.7379	-0.0015334	-3.4494	-0.001415	410.2324732712946	31.821	1.5195	31.636	30.984	32.504	-0.18503					48	36	2	0	0	0	0.027866	1	2185	2185		28.254	14.479	1	91151			27453	18160;18161	18917	18956	31710	31710					0.03731612465742273
IPAIIMALL	9	Unmodified	_IPAIIMALL_					0	0	0			REV__ENSG00000131477|ENST00000253796|RAMP2	REV__ENSG00000131477|ENST00000253796|RAMP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.2548828125	2	477.806457	953.598361	0.92426	0.00044162	3.2259	0.0015414	4.1502	0.001983	477.80791446606963	41.892	0.5752	41.892	41.579	42.154	0					22	16	2	0	0	0	0.024389	1	3754	3754		39.021	0	1	124400	+		27454	23215	18918	18957	31711	31711					0.11970537621391486
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7978820800781	2	496.798009	991.581465	0.028892	1.4353E-05	-0.38311	-0.00019033	-0.35422	-0.00017597	496.7976829945446	34.155	0.73493	34.155	33.855	34.59	0					55	18	4	0	0	0	0.03201	1	2527	2527		139.97	26.559	1	2250600			27455	3480	18919	18958	31712	31712					0.0853375305979398
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7983093261719	2	496.798009	991.581465	-0.12314	-6.1177E-05	0.16137	8.0166E-05	0.038225	1.899E-05	496.7980997880472	33.973	1.3566	33.969	33.212	34.568	-0.0045624					71	35	4	0	0	0	0.086035	2	2482	2482;2494		115.49	22.299	1	2275800			27456	3480	18919	18958	31713;31714	31713					0.0853375305979398
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.79791259765625	2	496.798009	991.581465	-0.42515	-0.00021122	0.035795	1.7783E-05	-0.38936	-0.00019343	496.7978942038211	33.983	0.71362	34.033	33.765	34.479	0.050255					53	17	4	0	0	0	0.016758	3	2444	2444;2454;2468		153.04	39.935	1	2280800			27457	3480	18919	18958	31715;31716;31717	31715					0.0853375305979398
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.798009	991.581465	-1.2798	-0.00063582	-0.063381	-3.1488E-05	-1.3432	-0.00066731	496.7972341115251	34.053	0.23073	33.877	33.742	33.972	-0.17557	-0.13115	8.9376E-05	NaN	153.04	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46179			27458	3480	18919	18958							0.0853375305979398
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.284912109375	2	478.284203	954.553853	0.20812	9.9542E-05	0.64554	0.00030875	0.85366	0.00040829	478.28355952259636	55.72	1.432	55.564	54.852	56.284	-0.15601					73	39	4	0	0	0	0.17822	2	6136	6136;6149		93.195	35.384	1	2128300			27459	6316	18920	18959	31718;31719	31718					0.07475849799573098
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2847900390625	2	478.284203	954.553853	-0.84903	-0.00040608	1.4792	0.00070746	0.63014	0.00030139	478.28403936695184	55.398	1.4758	55.496	54.807	56.283	0.098015					70	40	3	0	0	0	0.23085	2	6050	6050;6068		84.916	24.622	1	2210100			27460	6316	18920	18959	31720;31721	31720					0.07475849799573098
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.284203	954.553853	1.3512	0.00064624	-1.0208	-0.00048821	0.3304	0.00015802	478.2829220063747	55.589	1.3332	55.589	54.944	56.277	0	0.039378	-0.001363	NaN	93.195	71	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2240000			27461	6316	18920	18959							0.07475849799573098
IPALRRLE	8	Unmodified	_IPALRRLE_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.3080749511719	2	484.306001	966.597449	0.13636	6.6039E-05	3.8359	0.0018577	3.9722	0.0019238	484.30774292721304	78.643	0.93561	78.388	78.084	79.02	-0.25471					61	21	4	0	0	0	0.59392	2	9362	9362;9401		76.847	18.065	1	3081200	+		27462	20356	18921	18960	31722;31723	31722					0.11281459296696994
IPALRRLE	8	Unmodified	_IPALRRLE_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.30816650390625	2	484.306001	966.597449	0.22183	0.00010743	3.6718	0.0017783	3.8936	0.0018857	484.307676550077	78.553	1.0984	78.322	78.049	79.148	-0.23141					60	25	4	0	0	0	0.39824	2	9382	9371;9382		97.473	17.533	1	3587200	+		27463	20356	18921	18960	31724;31725	31725					0.11281459296696994
IPALRRLE	8	Unmodified	_IPALRRLE_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.306001	966.597449	-0.23157	-0.00011215	4.1157	0.0019933	3.8842	0.0018811	484.30778375426	78.618	0.37801	78.618	78.447	78.825	0	0.2127	0.00036947	NaN	97.473	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33168	+		27464	20356	18921	18960							0.11281459296696994
IPALVPVPV	9	Unmodified	_IPALVPVPV_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2518615722656	2	452.796946	903.57934	0.30529	0.00013824	0.083424	3.7774E-05	0.38872	0.00017601	452.79682319229164	75.263	0.37844	74.99	74.765	75.144	-0.27312					12	8	2	0	0	0	0.024475	1	8867	8867		21.702	0	1	99322			27465	1690	18922	18961	31726	31726					0.12369324321991826
IPAMLPAAR	9	Unmodified	_IPAMLPAAR_					0	0	0		ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	ENSG00000137207|ENST00000372422|YIPF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.29058837890625	2	470.275855	938.537157	-0.64585	-0.00030373	2.5162	0.0011833	1.8704	0.00087958	470.27848799737205	27.894	0.15883	27.726	27.61	27.768	-0.16816					5	3	2	0	0	0	0.024354	1	1582	1582		38.806	8.9646	1	43715			27466	5101	18923	18962	31727	31727					0.06543025641951772
IPAPWEISV	9	Unmodified	_IPAPWEISV_					0	0	0		ENST00000270460.10_2_19:56206740-56207082:+|nuORF	ENST00000270460.10_2_19:56206740-56207082:+|nuORF	ENST00000270460.10_2_19:56206740-56207082:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2756042480469	2	506.279118	1010.54368	0.05523	2.7962E-05	-3.912	-0.0019806	-3.8568	-0.0019526	506.2770592209091	56.288	0.81089	56.071	55.808	56.619	-0.21607					45	20	3	0	0	0	0.55828	1	6097	6097		55.504	6.0627	1	1788800			27467	11642	18924	18963	31728	31728					0.03883242074323334
IPAQNCPPSAL	11	Unmodified	_IPAQNCPPSAL_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.263427734375	2	555.784241	1109.55393	0.19882	0.0001105	-3.5679	-0.001983	-3.3691	-0.0018725	555.7824097159414	32.092	0.3466	31.9	31.771	32.118	-0.19261					11	7	2	0	0	0	0.024762	1	2191	2191		12.812	0	1	49199	+		27468	23576	18925	18964	31729	31729					0.0035348173723832588
IPARIPKP	8	Unmodified	_IPARIPKP_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.8027648925781	2	446.292362	890.570172	0.49976	0.00022304	-0.55228	-0.00024648	-0.052521	-2.344E-05	446.2920039533124	71.971	0.52518	71.981	71.765	72.29	0.0097733					21	13	3	0	0	0	0.027866	1	8639	8639		74.517	17.064	1	192590			27469	7816	18926	18965	31730	31730					0.1205097575631271
IPASKVFSL	9	Unmodified	_IPASKVFSL_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2431945800781	2	481.289485	960.564418	-0.99997	-0.00048128	1.2271	0.0005906	0.22715	0.00010932	481.2898637086825	61.056	0.76362	60.88	60.483	61.246	-0.1761					38	18	3	0	0	0	0.024374	1	6828	6828		58.782	10.866	1	681150			27470	3553	18927	18966	31731	31731					0.08255832453994572
IPATSIVSVLT	11	Unmodified	_IPATSIVSVLT_					0	0	0		ENST00000530673.1_2_11:64878667-64879056:+|nuORF	ENST00000530673.1_2_11:64878667-64879056:+|nuORF	ENST00000530673.1_2_11:64878667-64879056:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.8458862304688	2	550.831714	1099.64888	1.0071	0.00055475	-4.0765	-0.0022455	-3.0694	-0.0016907	550.8296583507328	20.009	0.6333	19.809	19.355	19.988	-0.2001					24	12	3	0	0	0	0.024762	1	456	456		18.262	0	1	131740			27471	16239	18928	18967	31732	31732					0.10303738480092761
IPATTGLPR	9	Unmodified	_IPATTGLPR_					0	0	0		ENST00000405405.2_1_6:80663080-80663251:-|nuORF	ENST00000405405.2_1_6:80663080-80663251:-|nuORF	ENST00000405405.2_1_6:80663080-80663251:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2764587402344	2	463.276909	924.539266	-0.057373	-2.658E-05	-0.11574	-5.3621E-05	-0.17312	-8.0201E-05	463.27671444011327	47.057	1.4004	47.057	46.378	47.779	0					89	39	4	0	0	0	0.35646	1	4708	4708		68.787	5.4806	1	6464400			27472	13718	18929	18968	31733	31733					0.0739777765143117
IPAVVNVTSL	10	Unmodified	_IPAVVNVTSL_					0	0	0		ENST00000507419.5_1_5:133984116-133984272:-|nuORF	ENST00000507419.5_1_5:133984116-133984272:-|nuORF	ENST00000507419.5_1_5:133984116-133984272:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.27239990234375	2	506.8055	1011.59645	-1.1328	-0.00057409	0.57484	0.00029133	-0.55792	-0.00028276	506.80567574992284	35.363	0.98486	35.342	34.866	35.851	-0.021763					80	25	4	0	0	0	0.03519	1	2751	2751		41.427	11.109	1	906520			27473	15761	18930	18969	31734	31734					0.0911120013714708
IPCEILQVL	9	Unmodified	_IPCEILQVL_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3239135742188	2	514.296453	1026.57835	1.0817	0.0005563	2.6569	0.0013664	3.7385	0.0019227	514.2977922226614	97.655	1.4087	97.531	96.661	98.07	-0.12368					40	32	2	0	0	0	0.024405	1	11994	11994		44.117	12.162	1	105310	+		27474	21348	18931	18970	31735	31735					0.06612741890762663
IPCEILQVL	9	Unmodified	_IPCEILQVL_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.296453	1026.57835	-0.14059	-7.2307E-05	3.4603	0.0017796	3.3197	0.0017073	514.2981533793877	97.827	0.66455	97.661	97.17	97.834	-0.16521	0.052306	-2.2848E-05	NaN	44.117	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81774	+		27475	21348	18931	18970							0.06612741890762663
IPCQFLELP	9	Unmodified	_IPCQFLELP_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3313598632812	2	530.280803	1058.54705	-0.98009	-0.00051972	0.91732	0.00048644	-0.06277	-3.3286E-05	530.2833983842231	80.01	0.79977	80.01	79.573	80.373	0					29	18	3	0	0	0	0.023417	1	9887	9887		79.451	5.4763	1	203950			27476	6526	18932	18971	31736	31736					0.020121688566632656
IPCQFLELP	9	Unmodified	_IPCQFLELP_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.280803	1058.54705	-0.62789	-0.00033296	5.8661	0.0031107	5.2382	0.0027777	530.7857225903069	80.192	0.99733	80.213	79.277	80.274	0.021446	0.12747	0.0024406	NaN	79.451	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325430			27477	6526	18932	18971							0.020121688566632656
IPCQFLELP	9	Unmodified	_IPCQFLELP_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.280803	1058.54705	0.10945	5.8039E-05	3.965	0.0021026	4.0745	0.0021606	530.2822353901383	80.272	0.62222	80.034	79.747	80.369	-0.23784	-0.051521	0.00042431	NaN	79.451	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114700			27478	6526	18932	18971							0.020121688566632656
IPCTLARQ	8	Unmodified	_IPCTLARQ_					0	0	0			REV__ENSG00000124900|ENST00000449290|TRIM51	REV__ENSG00000124900|ENST00000449290|TRIM51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7611083984375	2	451.249837	900.485122	-0.7334	-0.00033095	-0.26036	-0.00011749	-0.99376	-0.00044843	451.2501997176812	38.788	1.2181	38.624	37.644	38.862	-0.16458					65	34	3	0	0	0	0.027866	1	3238	3238		35.201	10.998	1	368050	+		27479	22795	18933	18972	31737	31737					0.0308986222820522
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.8663940429688	2	622.866089	1243.71762	-0.68239	-0.00042504	0.74795	0.00046587	0.065557	4.0833E-05	622.866441727555	80.479	1.0956	80.479	80.163	81.258	0					80	26	4	0	0	0	0.33796	4	9994	9994;9999;10011;10025		86.882	15.842	1	2268600			27480	5089	18934	18973	31738;31739;31740;31741	31738					0.10551402779788077
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.8663330078125	2	622.866089	1243.71762	-0.6532	-0.00040686	0.66769	0.00041588	0.014492	9.0267E-06	622.8664447649837	80.635	1.1874	80.483	80.049	81.237	-0.15168					81	28	4	0	0	0	0.4516	1	9987	9987		79.489	4.4458	1	2105000			27481	5089	18934	18973	31742	31742					0.10551402779788077
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.865966796875	2	622.866089	1243.71762	-1.3607	-0.00084753	1.4332	0.00089269	0.072506	4.5161E-05	622.8668762171536	80.5	1.3035	80.521	80.146	81.449	0.021446					87	31	4	0	0	0	0.30495	2	9943	9918;9943		89.029	6.427	1	2188800			27482	5089	18934	18973	31743;31744	31744					0.10551402779788077
IPDHPAKS	8	Unmodified	_IPDHPAKS_					0	0	0		ENSG00000189367|ENST00000483725|KIAA0408;nc|ENSG00000189367|Q6ZU52-2|KIAA0408;ENST00000368281.1_1_6:127765256-127771512:-|nuORF	ENSG00000189367|ENST00000483725|KIAA0408	ENSG00000189367|ENST00000483725|KIAA0408	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7318420410156	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	1.0365	1	12307	12307		31.53	2.3803	1	2327700			27483	9806	18935	18974	31745	31745					0.012929426918958598
IPDVKLEKT	9	Unmodified	_IPDVKLEKT_					0	0	0		ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8	ENSG00000155666|ENST00000286096|KDM8	ENSG00000155666|ENST00000286096|KDM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8126220703125	2	521.810782	1041.60701	-0.37996	-0.00019827	4.1607	0.0021711	3.7807	0.0019728	521.8129367151431	41.316	0.74377	41.316	40.944	41.688	0					65	18	4	0	0	0	0.89441	1	3734	3734		32.812	1.2826	1	14596000			27484	6482	18936	18975	31746	31746					0.0878718279154782
IPDVKLEKT	9	Unmodified	_IPDVKLEKT_					0	0	0		ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8	ENSG00000155666|ENST00000286096|KDM8	ENSG00000155666|ENST00000286096|KDM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8128662109375	2	521.810782	1041.60701	-0.36354	-0.0001897	4.4443	0.0023191	4.0808	0.0021294	521.8130669238732	42.143	1.7596	42.011	41.678	43.437	-0.1322					142	49	4	0	0	0	0.74711	1	3802	3802		42.864	3.6114	1	7330800			27485	6482	18936	18975	31747	31747					0.0878718279154782
IPDVRGSGVL	10	Unmodified	_IPDVRGSGVL_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.7925109863281	2	506.792924	1011.57129	-0.35557	-0.0001802	-1.1749	-0.00059544	-1.5305	-0.00077565	506.79245433045855	44.155	1.3845	44.192	43.888	45.272	0.036903					127	39	6	0	0	0	0.55353	1	4114	4114		82.241	5.4664	1	117970000			27486	5580	18937	18976	31748	31748					0.06597145334592369
IPDVRVTQ	8	Unmodified	_IPDVRVTQ_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2842102050781	2	464.266542	926.51853	-0.12702	-5.8973E-05	0.30563	0.00014189	0.17861	8.2921E-05	464.2665175317403	24.603	0.50086	24.387	24.134	24.635	-0.2151					27	11	3	0	0	0	0.027866	1	1126	1126		40.778	27.819	1	322430			27487	194	18938	18977	31749	31749					0.052331872717559236
IPDVRVTQ	8	Unmodified	_IPDVRVTQ_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.28460693359375	2	464.266542	926.51853	-0.1286	-5.9705E-05	0.56893	0.00026414	0.44033	0.00020443	464.2666081773161	24.405	0.50769	24.23	23.918	24.425	-0.17484					21	11	3	0	0	0	0.027866	1	1078	1078		26.693	9.3279	1	366020			27488	194	18938	18977	31750	31750					0.052331872717559236
IPEDDEYETT	10	Unmodified	_IPEDDEYETT_					0	0	0		nc|ENSG00000158458|O14511-7|NRG2;nc|ENSG00000158458|O14511-8|NRG2;nc|ENSG00000158458|O14511-2|NRG2;ENSG00000158458|ENST00000361474|NRG2;nc|ENSG00000158458|O14511-4|NRG2;nc|ENSG00000158458|O14511-3|NRG2	nc|ENSG00000158458|O14511-7|NRG2	nc|ENSG00000158458|O14511-7|NRG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	606.8181762695312	2	606.251148	1210.48774	-0.043648	-2.6462E-05	4.4909	0.0027226	4.4473	0.0026962	606.2537882290413	101.83	0.5538	101.66	101.33	101.89	-0.17178					20	12	2	0	0	0	0.03519	1	12590	12590		27.882	2.7563	1	84294			27489	6671	18939	18978	31751	31751					-0.10908100414462751
IPEEQRAQL	9	Unmodified	_IPEEQRAQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.293212890625	2	542.293288	1082.57202	-0.29529	-0.00016014	-0.081533	-4.4215E-05	-0.37683	-0.00020435	542.293262942454	39.491	0.95345	39.491	39.183	40.137	0					73	26	4	0	0	0	0.025498	4	3401	3389;3401;3412;3425		145.16	32.745	1	6866000			27490	18548	18940	18979	31752;31753;31754;31755	31753					0.03403939983604687
IPEEQRAQL	9	Unmodified	_IPEEQRAQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2931518554688	2	542.293288	1082.57202	-1.5645	-0.00084841	1.124	0.00060956	-0.44045	-0.00023885	542.2939208376687	39.531	0.98125	39.432	39.127	40.108	-0.098755					72	26	4	0	0	0	0.016542	3	3394	3381;3394;3406		154.12	41.707	1	6546900			27491	18548	18940	18979	31756;31757;31758	31757					0.03403939983604687
IPEEQRAQL	9	Unmodified	_IPEEQRAQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.293212890625	2	542.293288	1082.57202	-1.527	-0.00082806	1.2952	0.0007024	-0.23172	-0.00012566	542.2940016035473	39.715	0.8941	39.739	39.455	40.349	0.023727					69	24	4	0	0	0	0.025498	4	3367	3367;3377;3389;3403		145.16	34.513	1	6720100			27492	18548	18940	18979	31759;31760;31761;31762	31759					0.03403939983604687
IPEKLVTL	8	Unmodified	_IPEKLVTL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2640686035156	2	456.791861	911.569169	-0.28702	-0.00013111	0.72871	0.00033287	0.44169	0.00020176	456.791932635603	81.603	0.85687	81.627	81.288	82.145	0.023911					53	20	4	0	0	0	0.027866	1	10092	10092		82.305	26.801	1	1471500			27493	7239	18941	18980	31763	31763					0.10984716596760791
IPEKWVPE	8	Unmodified	_IPEKWVPE_					0	0	0		ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7899475097656	2	499.271293	996.528032	-0.27903	-0.00013931	-2.4072	-0.0012018	-2.6862	-0.0013411	499.26922303919673	29.212	0.39609	29.291	29.054	29.45	0.078346					18	9	3	0	0	0	0.027866	1	1729	1729		55.504	11.387	1	67040			27494	5697	18942	18981	31764	31764					0.02962955557291025
IPELDAEPDA	10	Unmodified	_IPELDAEPDA_					0	0	0			REV__ENST00000553293.5_1_14:69522275-69583201:-|nuORF	REV__ENST00000553293.5_1_14:69522275-69583201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.214599609375	2	535.256037	1068.49752	-0.6104	-0.00032672	-2.9058	-0.0015554	-3.5162	-0.0018821	535.2527955910493	29.822	0.37267	29.672	29.377	29.75	-0.14952					11	8	2	0	0	0	0.03519	1	1806	1806		27.882	4.3595	1	57816	+		27495	34970	18943	18982	31765	31765					-0.03398867618420809
IPELLRIV	8	Unmodified	_IPELLRIV_					0	0	0		ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7620849609375	2	476.813128	951.611703	0.12664	6.0385E-05	0.038545	1.8379E-05	0.16519	7.8764E-05	476.8127595520097	64.315	0.73135	64.053	63.648	64.379	-0.2626					34	19	3	0	0	0	0.027866	1	7519	7519		47.916	5.4411	1	444860			27496	1669	18944	18983	31766	31766					0.13396111725000992
IPEMARLPTV	10	Unmodified	_IPEMARLPTV_					0	0	0		NOTCH2|p.S2350T|1|0.24|ENSG00000134250|chr1:119915673-119915673|C/G|missense_variant	NOTCH2|p.S2350T|1|0.24|ENSG00000134250|chr1:119915673-119915673|C/G|missense_variant	NOTCH2|p.S2350T|1|0.24|ENSG00000134250|chr1:119915673-119915673|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8016967773438	2	563.818084	1125.62162	-0.84655	-0.0004773	3.5248	0.0019873	2.6783	0.00151	563.8207225523744	31.86	0.1224	31.928	31.845	31.967	0.06896					4	2	2	0	0	0	0.03519	1	2111	2111		52.937	10.541	1	35541			27497	18884	18945	18984	31767	31767					0.06382931668031233
IPEVAVAYPK	10	Unmodified	_IPEVAVAYPK_					0	0	0		ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8312377929688	2	543.813325	1085.6121	0.024003	1.3053E-05	3.5944	0.0019547	3.6184	0.0019677	543.8155777399004	71.282	0.19215	71.282	71.185	71.377	0					7	4	2	0	0	0	0.03519	1	8627	8627		32.812	0.85756	1	102970			27498	7650	18946	18985	31768	31768					0.07271486654190085
IPEVGCRLVP	10	Unmodified	_IPEVGCRLVP_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.805419921875	2	541.804977	1081.5954	-0.8527	-0.000462	-2.4467	-0.0013257	-3.2994	-0.0017876	541.8034213989672	53.041	0.33258	53.041	52.827	53.16	0					14	8	2	0	0	0	0.03519	1	5686	5686		23.042	0	1	206600			27499	10569	18947	18986	31769	31769					0.0578666249662092
IPFAQPPL	8	Unmodified	_IPFAQPPL_					0	0	0		ENST00000568118.1_1_16:66995210-66997287:+|nuORF;ENSG00000172828|ENST00000303334|CES3	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.756103515625	2	441.757821	881.501089	-0.30843	-0.00013625	-4.2305	-0.0018689	-4.5389	-0.0020051	441.7557935776537	45.194	0.78352	45.194	44.862	45.646	0					56	22	4	0	0	0	0.48546	1	4367	4367		86.935	8.9908	1	2334900			27500	8313	18948	18987	31770	31770					0.055598917367547074
IPFAQPPL	8	Unmodified	_IPFAQPPL_					0	0	0		ENST00000568118.1_1_16:66995210-66997287:+|nuORF;ENSG00000172828|ENST00000303334|CES3	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.757821	881.501089	-0.38437	-0.0001698	-3.9188	-0.0017312	-4.3032	-0.001901	441.7558850611269	45.281	0.68599	45.132	44.763	45.449	-0.1488	-0.035699	0.00014752	NaN	86.935	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2199800			27501	8313	18948	18987							0.055598917367547074
IPFAQPPL	8	Unmodified	_IPFAQPPL_					0	0	0		ENST00000568118.1_1_16:66995210-66997287:+|nuORF;ENSG00000172828|ENST00000303334|CES3	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	441.757821	881.501089	-0.02305	-1.0183E-05	-4.4582	-0.0019694	-4.4813	-0.0019796	441.7556761748724	45.15	0.58377	45.194	44.894	45.478	0.04388	0.026241	-0.00032903	NaN	86.935	50	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2359500			27502	8313	18948	18987							0.055598917367547074
IPFAQPPL	8	Unmodified	_IPFAQPPL_					0	0	0		ENST00000568118.1_1_16:66995210-66997287:+|nuORF;ENSG00000172828|ENST00000303334|CES3	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	441.757821	881.501089	-0.70268	-0.00031041	-0.29287	-0.00012938	-0.99555	-0.00043979	441.7581129373952	45.28	0.65248	45.181	44.942	45.594	-0.099449	0.013086	0.0033511	NaN	86.935	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200530			27503	8313	18948	18987							0.055598917367547074
IPFAQPPL	8	Unmodified	_IPFAQPPL_					0	0	0		ENST00000568118.1_1_16:66995210-66997287:+|nuORF;ENSG00000172828|ENST00000303334|CES3	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.757821	881.501089	-0.15929	-7.0367E-05	-3.6247	-0.0016012	-3.784	-0.0016716	441.75605247903866	45.411	0.42022	45.159	44.905	45.325	-0.25252	-0.0091859	0.00040737	NaN	86.935	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273040			27504	8313	18948	18987							0.055598917367547074
IPFAQPPL	8	Unmodified	_IPFAQPPL_					0	0	0		ENST00000568118.1_1_16:66995210-66997287:+|nuORF;ENSG00000172828|ENST00000303334|CES3	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	ENST00000568118.1_1_16:66995210-66997287:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	441.757821	881.501089	-0.11464	-5.0642E-05	-1.8137	-0.00080123	-1.9284	-0.00085187	441.7572050374896	45.358	0.6087	45.147	44.91	45.519	-0.21109	-0.020768	0.0020074	NaN	86.935	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254750			27505	8313	18948	18987							0.055598917367547074
IPFFIFGPLMM	11	Unmodified	_IPFFIFGPLMM_					0	0	0		ENSG00000167769|ENST00000301452|ACER1	ENSG00000167769|ENST00000301452|ACER1	ENSG00000167769|ENST00000301452|ACER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.24713134765625	3	438.232596	1311.67596	-0.25522	-0.00011184	-3.3841	-0.001483	-3.6394	-0.0015949	438.23060187091585	26.72	0.37296	26.696	26.486	26.859	-0.023088					16	8	2	0	0	0	0.024727	1	1370	1370		27.047	0	1	43907			27506	7734	18949	18988	31771	31771					0.03258807495262772
IPFGKNLNL	9	Unmodified	_IPFGKNLNL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.E3565D|1|0.27|ENSG00000039139|chr5:13753410-13753410|C/A|missense_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2923278808594	2	508.300384	1014.58622	-1.0143	-0.00051559	2.6	0.0013216	1.5857	0.00080601	508.30177043952904	51.073	0.99733	51.16	50.855	51.852	0.087006					64	27	3	0	0	0	0.023775	1	5276	5276		68.485	2.6815	1	1917300			27507	1059	18950	18989	31772	31772					0.07950637202554844
IPFGKNLNL	9	Unmodified	_IPFGKNLNL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.E3565D|1|0.27|ENSG00000039139|chr5:13753410-13753410|C/A|missense_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.300384	1014.58622	-0.59165	-0.00030074	2.4949	0.0012682	1.9032	0.00096742	508.3018102026093	51.356	0.9088	51.207	50.97	51.879	-0.14916	0.0025667	0.00013823	NaN	68.485	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1818500			27508	1059	18950	18989							0.07950637202554844
IPFHQGYLA	9	Unmodified	_IPFHQGYLA_					0	0	0			REV__ENSG00000173757|ENST00000293328|STAT5B	REV__ENSG00000173757|ENST00000293328|STAT5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7318115234375	2	523.276909	1044.53927	-0.90979	-0.00047607	-0.20188	-0.00010564	-1.1117	-0.00058171	523.2770965320792	37.599	0.50695	37.38	36.999	37.506	-0.2195					15	12	2	0	0	0	0.024487	1	2989	2989		24.203	0	1	145420	+		27509	26804	18951	18990	31773	31773					0.018777776514525613
IPFIGFGFLDN	11	Unmodified	_IPFIGFGFLDN_					0	0	0		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.8909606933594	3	413.88513	1238.63356	-0.9522	-0.0003941	-1.9084	-0.00078987	-2.8606	-0.001184	413.8843056405365	21.568	0.96823	21.356	21.02	21.988	-0.2128					27	19	2	0	0	0	0.024759	1	617	617		12.957	0	1	46695			27510	7352	18952	18991	31774	31774					0.023788716829130863
IPFIKLANN	9	Unmodified	_IPFIKLANN_					0	0	0		ENST00000480552.5_1_7:140156054-140156144:-|nuORF	ENST00000480552.5_1_7:140156054-140156144:-|nuORF	ENST00000480552.5_1_7:140156054-140156144:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3093872070312	2	515.30821	1028.60187	-0.32213	-0.000166	4.0587	0.0020915	3.7366	0.0019255	515.3102019388278	60.506	1.1742	60.3	59.794	60.968	-0.20599					73	29	3	0	0	0	0.43973	1	6751	6751		63.306	3.188	1	1552800			27511	15203	18953	18992	31775	31775					0.08870923719609891
IPFIKTEEP	9	Unmodified	_IPFIKTEEP_					0	0	0		nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1	nc|ENSG00000103449|Q9NSC2-2|SALL1	nc|ENSG00000103449|Q9NSC2-2|SALL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2952270507812	2	537.297507	1072.58046	-0.72556	-0.00038984	-3.3168	-0.0017821	-4.0423	-0.0021719	537.2956834278802	56.28	0.67887	56.28	55.999	56.678	0					48	18	4	0	0	0	0.15029	1	6291	6291		99.375	3.3414	1	9079500			27512	2504	18954	18993	31776	31776					0.04707493900218651
IPFIRNPISIA	11	Unmodified	_IPFIRNPISIA_					0	0	0			REV__ENSG00000127954|ENST00000380079|STEAP4;REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	REV__ENSG00000127954|ENST00000380079|STEAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	621.3316650390625	2	620.874248	1239.73394	0.72539	0.00045038	4.0643	0.0025234	4.7897	0.0029738	620.8769782636218	99.287	0.35419	99.152	98.936	99.29	-0.13526					16	9	2	0	0	0	0.024792	1	12289	12289		2.5243	0	1	67435	+		27513	22955;37586	18955	18994	31777	31777					0.12366528736561122
IPFIVTCFQ	9	Unmodified	_IPFIVTCFQ_					0	0	0			REV__ENST00000528793.5_1_5:176867950-176869060:+|nuORF	REV__ENST00000528793.5_1_5:176867950-176869060:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	534.2838134765625	2	534.283346	1066.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.1	1	110.96	110.46	111.46	-0.14127								0	0	0	0.67604	1	13578	13578		25.45	3.4903	1		+		27514	34502	18956	18995	31778	31778					0.021524727192854698
IPFNPGLP	8	Unmodified	_IPFNPGLP_					0	0	0		ENST00000225655.5_1_17:4852175-4852238:-|nuORF	ENST00000225655.5_1_17:4852175-4852238:-|nuORF	ENST00000225655.5_1_17:4852175-4852238:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.7421569824219	2	427.742171	853.469789	0.35306	0.00015102	0.022651	9.689E-06	0.37571	0.00016071	427.7420305524831	89.493	0.75749	89.472	89.157	89.914	-0.021645					44	17	3	0	0	0	0.82104	1	11274	11274		57.453	0	1	840490			27515	11207	18957	18996	31779	31779					0.03719318702644614
IPFPFLVK	8	Unmodified	_IPFPFLVK_					0	0	0		ENSG00000181009|ENST00000641181|OR52N5	ENSG00000181009|ENST00000641181|OR52N5	ENSG00000181009|ENST00000641181|OR52N5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7791442871094	2	480.799489	959.584425	-0.49808	-0.00023948	-4.1642	-0.0020022	-4.6623	-0.0022416	480.79776043370623	60.864	0.26678	60.65	60.567	60.834	-0.21339					9	6	2	0	0	0	0.027866	1	7006	7006		14.664	0	1	80271			27516	9016	18958	18997	31780	31780					0.1030162818460667
IPFPTPPPP	9	Unmodified	_IPFPTPPPP_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2449035644531	2	481.770929	961.527304	-0.98252	-0.00047335	-3.335	-0.0016067	-4.3175	-0.00208	481.7691855878885	61.073	0.53016	60.897	60.674	61.205	-0.1761					24	12	3	0	0	0	0.024386	1	6822	6822		42.474	8.9589	1	367790			27517	7039	18959	18998	31781	31781					0.04500160908230555
IPFTKDLDV	9	Unmodified	_IPFTKDLDV_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3245239257812	2	524.289682	1046.56481	0.26077	0.00013672	1.7271	0.00090551	1.9879	0.0010422	524.2904283156817	79.742	0.37363	79.522	79.285	79.659	-0.21922					12	8	2	0	0	0	0.024541	1	9517	9517		30.504	3.7075	1	51161	+		27518	28047	18960	18999	31782	31782					0.043392073831682865
IPFVCTVGIL	10	Unmodified	_IPFVCTVGIL_					0	0	0			REV__ENSG00000177542|ENST00000628067|SLC25A22	REV__ENSG00000177542|ENST00000628067|SLC25A22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3062744140625	2	531.306821	1060.59909	0.2679	0.00014234	2.0261	0.0010765	2.294	0.0012188	531.3077830620852	58.637	1.4373	58.728	58.26	59.697	0.091217					98	34	5	0	0	0	0.47726	1	6617	6617		90.777	2.1338	1	32068000	+		27519	27122	18961	19000	31783	31783					0.0712133227045797
IPFVHQQIK	9	Unmodified	_IPFVHQQIK_					0	0	0			REV__chr18:31071841-31079847|128|12.09|0.16|6.26|-|0|DSC2,DSC2|1	REV__chr18:31071841-31079847|128|12.09|0.16|6.26|-|0|DSC2,DSC2|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.7811279296875	2	555.326934	1108.63931	0.29384	0.00016318	-0.64186	-0.00035644	-0.34802	-0.00019327	555.3264872040036	58.797	3.0989	58.885	57.977	61.076	0.088795					160	83	3	0	0	0	0.024381	1	6558	6558		37.159	0	1	1837900	+		27520	19392	18962	19001	31784	31784					0.08934014985220529
IPFVPRGSP	9	Unmodified	_IPFVPRGSP_					0	0	0			REV__ENSG00000154144|ENST00000441174|TBRG1	REV__ENSG00000154144|ENST00000441174|TBRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.8050537109375	2	485.279452	968.544351	-0.53565	-0.00025994	-3.338	-0.0016199	-3.8736	-0.0018798	485.27766145104744	34.575	0.73798	34.575	34.168	34.906	0					51	18	5	0	0	0	0.024323	1	2601	2601		35.618	3.6634	1	829110	+		27521	24941	18963	19002	31785	31785					0.05882081514039328
IPGAGWGF	8	Unmodified	_IPGAGWGF_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.8656005859375	2	402.705589	803.396624	0.19668	7.9205E-05	1.2788	0.00051498	1.4755	0.00059418	402.7069663739701	43.683	0.31799	43.446	43.282	43.6	-0.23736					10	8	2	0	0	0	0.027866	1	3996	3996		16.705	0	1	72942	+		27522	27306	18964	19003	31786	31786					-0.012938100199448854
IPGANQLI	8	Unmodified	_IPGANQLI_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2453308105469	2	413.245078	824.475603	-0.26997	-0.00011156	0.79526	0.00032864	0.52529	0.00021707	413.24525055925835	31.309	0.6907	31.067	30.794	31.485	-0.24109					39	17	3	0	0	0	0.94001	1	2066	2066		46.766	0	1	917290	+		27523	20345	18965	19004	31787	31787					0.05634417214344012
IPGANQLI	8	Unmodified	_IPGANQLI_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	413.245078	824.475603	-0.26997	-0.00011156	0.79526	0.00032864	0.52529	0.00021707	413.24525055925835	31.309	0.6907	31.067	30.794	31.485	-0.24109	-0.0023328	-5.9315E-05	NaN	46.766	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	917290	+		27524	20345	18965	19004							0.05634417214344012
IPGANQLI	8	Unmodified	_IPGANQLI_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	413.245078	824.475603	-0.12653	-5.2289E-05	0.78987	0.00032641	0.66334	0.00027412	413.24517138764463	31.253	0.68814	31.101	30.846	31.534	-0.15231	0.031026	-6.3769E-05	NaN	46.766	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	696180	+		27525	20345	18965	19004							0.05634417214344012
IPGFGGPLVL	10	Unmodified	_IPGFGGPLVL_					0	0	0			REV__ENSG00000242866|ENST00000450892|STRC	REV__ENSG00000242866|ENST00000450892|STRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.80584716796875	2	485.292028	968.569503	-0.12868	-6.2446E-05	-2.8672	-0.0013914	-2.9959	-0.0014539	485.2901791494495	34.338	0.30136	34.334	34.112	34.414	-0.0045624					14	7	3	0	0	0	0.03519	1	2536	2536		44.531	9.3304	1	160770	+		27526	28984	18966	19005	31788	31788					0.08396136316594038
IPGLGGREV	9	Unmodified	_IPGLGGREV_					0	0	0		ENST00000393229.3_1_9:135041800-135042004:+|nuORF	ENST00000393229.3_1_9:135041800-135042004:+|nuORF	ENST00000393229.3_1_9:135041800-135042004:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.2615966796875	2	449.261259	896.507966	0.35576	0.00015983	-0.37595	-0.0001689	-0.020187	-9.0691E-06	449.2610018071674	41.143	0.95802	41.143	40.835	41.793	0					66	26	3	0	0	0	0.33245	1	3685	3685		71.296	7.9894	1	5297500			27527	13443	18967	19006	31789	31789					0.05557204617332445
IPGLGGREV	9	Unmodified	_IPGLGGREV_					0	0	0		ENST00000393229.3_1_9:135041800-135042004:+|nuORF	ENST00000393229.3_1_9:135041800-135042004:+|nuORF	ENST00000393229.3_1_9:135041800-135042004:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.2617492675781	2	449.261259	896.507966	0.369	0.00016578	-0.18924	-8.5018E-05	0.17976	8.0759E-05	449.26097614386697	41.319	1.1088	41.196	40.725	41.834	-0.12317					110	30	6	0	0	0	0.33245	1	3687	3687		71.296	4.8664	1	5645000			27528	13443	18967	19006	31790	31790					0.05557204617332445
IPGLTLYS	8	Unmodified	_IPGLTLYS_					0	0	0		nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.2462158203125	2	432.247286	862.48002	-0.94288	-0.00040756	0.22733	9.8263E-05	-0.71555	-0.00030929	432.2474517150645	93.471	1.3378	93.331	92.873	94.211	-0.13995					88	30	5	0	0	0	0.95417	1	11505	11505		44.531	5.5096	1	1569400			27529	18853	18968	19007	31791	31791					0.04327881637232167
IPGNGKLL	8	Unmodified	_IPGNGKLL_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.25579833984375	2	406.255446	810.496338	-1.4027	-0.00056986	2.7174	0.001104	1.3147	0.00053409	406.2564309714345	40.71	1.7006	40.48	39.771	41.472	-0.23029					83	44	2	0	0	0	0.85409	1	3534	3534		54.765	0	1	2005900			27530	3212	18969	19008	31792	31792					0.08351007594001203
IPGSHSKLN	9	Unmodified	_IPGSHSKLN_					0	0	0			REV__nc|ENSG00000133740|Q15329-3|E2F5	REV__nc|ENSG00000133740|Q15329-3|E2F5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7592468261719	2	476.764166	951.513779	0.43873	0.00020917	-1.4385	-0.00068582	-0.99976	-0.00047665	476.7633227468832	23.186	0.41179	23.186	22.987	23.399	0					15	9	2	0	0	0	0.024354	1	872	872		38.806	0	1	179890	+		27531	23391	18970	19009	31793	31793					0.036083031289990686
IPGTIEMLH	9	Unmodified	_IPGTIEMLH_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3111877441406	2	505.770603	1009.52665	-0.61871	-0.00031293	0.37783	0.0001911	-0.24088	-0.00012183	505.7708626689846	48.595	0.63329	48.442	48.159	48.792	-0.15277					49	17	4	0	0	0	0.023775	1	4913	4913		57.811	0	1	1374500			27532	1095	18971	19010	31794	31794					0.022269981968634056
IPGTYSRWAR	10	Unmodified	_IPGTYSRWAR_					0	0	0		ENST00000464323.1_1_6:10410019-10419770:-|nuORF	ENST00000464323.1_1_6:10410019-10419770:-|nuORF	ENST00000464323.1_1_6:10410019-10419770:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.22247314453125	3	402.884123	1205.63054	0.79405	0.00031991	2.6916	0.0010844	3.4857	0.0014043	403.21925786012974	24.564	0.39061	24.389	24.252	24.643	-0.17484					12	8	2	0	0	0	0.03519	1	1062	1062		9.2118	0	1	51406			27533	14759	18972	19011	31795	31795					0.03595041348739869
IPHFFCDMY	9	Oxidation (M)	_IPHFFCDM(Oxidation (M))Y_		IPHFFCDM(1)Y		IPHFFCDM(63)Y	0	0	1		OR1E2|p.S191Y|1|0.42|ENSG00000127780|chr17:3433270-3433270|G/T|missense_variant	OR1E2|p.S191Y|1|0.42|ENSG00000127780|chr17:3433270-3433270|G/T|missense_variant	OR1E2|p.S191Y|1|0.42|ENSG00000127780|chr17:3433270-3433270|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.747314453125	2	594.74627	1187.47799	-0.68416	-0.0004069	3.3062	0.0019664	2.6221	0.0015595	594.7490473467548	70.626	0.84389	70.369	69.684	70.528	-0.25713					41	22	3	0	0	0	0.44472	1	8233	8233		62.978	23.957	1	2855000			27534	18907	18973	19012	31796	31796		596			-0.10825238434540552
IPHFFCDMY	9	Oxidation (M)	_IPHFFCDM(Oxidation (M))Y_					0	0	1		OR1E2|p.S191Y|1|0.42|ENSG00000127780|chr17:3433270-3433270|G/T|missense_variant	OR1E2|p.S191Y|1|0.42|ENSG00000127780|chr17:3433270-3433270|G/T|missense_variant	OR1E2|p.S191Y|1|0.42|ENSG00000127780|chr17:3433270-3433270|G/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	594.74627	1187.47799	-0.02313	-1.3756E-05	2.2159	0.0013179	2.1928	0.0013041	594.7488231521671	70.545	0.3893	70.33	70.174	70.563	-0.21424	-0.019197	-0.00076048	NaN	62.978	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2569300			27535	18907	18973	19012				596			-0.10825238434540552
IPHNEKLLS	9	Unmodified	_IPHNEKLLS_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.77685546875	2	525.800749	1049.58694	-0.89227	-0.00046916	3.8104	0.0020035	2.9181	0.0015344	525.8024164772071	48.865	0.68753	48.933	48.659	49.347	0.068432					36	18	3	0	0	0	0.024506	1	5004	5004		30.504	8.5438	1	648290			27536	2485	18974	19013	31797	31797					0.06413431851638052
IPIAVCIYW	9	Unmodified	_IPIAVCIYW_					0	0	0		nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.3295288085938	2	539.293714	1076.57287	-1.1807	-0.00063673	-3.4935	-0.001884	-4.6742	-0.0025208	539.7938555120353	44.962	0.71589	44.862	44.472	45.188	-0.099449					31	18	3	0	0	0	0.024389	1	4211	4211		39.021	12.225	1	152110			27537	3237	18975	19014	31798	31798					0.037650630989446654
IPILEKLAPS	10	Unmodified	_IPILEKLAPS_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7537841796875	2	540.8368	1079.65905	-0.86913	-0.00047006	2.3354	0.001263	1.4662	0.00079299	540.8378758187094	38.087	0.43433	37.907	37.701	38.136	-0.17929					19	12	2	0	0	0	0.03519	1	3142	3142		14.137	0	1	248120			27538	8182	18976	19015	31799	31799					0.12240346205294372
IPILRRDHHIQ	11	Unmodified	_IPILRRDHHIQ_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.60772705078125	3	466.608993	1396.80515	0.0065047	3.0352E-06	-2.529	-0.00118	-2.5225	-0.001177	466.60759932614815	98.334	2.2102	98.334	97.058	99.268	0					122	50	3	0	0	0	1.0739	1	12473	12473		18.531	4.445	1	497500			27539	18822	18977	19016	31800	31800					0.12262041493931974
IPILWLTDS	9	Unmodified	_IPILWLTDS_					0	0	0			REV__ENSG00000104783|ENST00000648319|KCNN4	REV__ENSG00000104783|ENST00000648319|KCNN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.297607421875	2	529.30005	1056.58555	0.0093011	4.9231E-06	-4.4033	-0.0023307	-4.394	-0.0023257	529.2974144850223	106.51	0.8959	106.51	106.1	106.99	0.0018387					60	31	4	0	0	0	0.88411	1	13612	13612		33.516	5.4341	1	974930	+		27540	21463	18978	19017	31801	31801					0.059517977628502194
IPIRLCFPF	9	Unmodified	_IPIRLCFPF_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3	REV__ENSG00000053747|ENST00000313654|LAMA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.216796875	2	553.31498	1104.61541	-0.30504	-0.00016878	0.46415	0.00025682	0.15912	8.8041E-05	553.3166089278013	70.339	0.45514	70.067	69.7	70.155	-0.27185					18	10	2	0	0	0	0.024497	1	8163	8163		20.482	4.0087	1	116020	+		27541	20182	18979	19018	31802	31802					0.06728458227189549
IPIRLIEV	8	Unmodified	_IPIRLIEV_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.30670166015625	2	476.813128	951.611703	0.0007656	3.6505E-07	0.59896	0.00028559	0.59972	0.00028595	476.8130170540162	64.306	0.67402	64.113	63.717	64.391	-0.19243					29	16	3	0	0	0	0.027866	1	7304	7304		26.796	3.7536	1	428120	+		27542	23479	18980	19019	31803	31803					0.13396111724989623
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.79327392578125	2	490.792392	979.570232	0.11909	5.8448E-05	1.0168	0.00049903	1.1359	0.00055748	490.7925488383622	61.547	0.82783	61.547	61.216	62.044	0					46	21	4	0	0	0	0.08613	1	7115	7115		115.46	7.3715	1	2219300			27543	18822	18981	19020	31804	31804					0.07962930965663872
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.792392	979.570232	0.34471	0.00016918	0.80753	0.00039633	1.1522	0.00056551	490.79246322847933	61.741	0.82257	61.514	61.261	62.084	-0.22663	-0.014478	-0.00015185	NaN	115.46	47	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2457200			27544	18822	18981	19020							0.07962930965663872
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.792392	979.570232	-0.1179	-5.7865E-05	1.1086	0.0005441	0.99072	0.00048624	490.79257730845774	61.454	0.78621	61.525	61.239	62.026	0.071125	-0.0036101	0.00014369	NaN	115.46	48	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2258000			27545	18822	18981	19020							0.07962930965663872
IPKAQPRGR	9	Unmodified	_IPKAQPRGR_					0	0	0			REV__nc|ENSG00000131037|Q8TE68-3|EPS8L1	REV__nc|ENSG00000131037|Q8TE68-3|EPS8L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.7587890625	2	511.814525	1021.6145	-0.15116	-7.7367E-05	-0.87521	-0.00044795	-1.0264	-0.00052531	511.81394984440925	25.989	0.36933	26.069	25.879	26.248	0.08009					11	8	2	0	0	0	0.024487	1	1219	1219		11.511	0	1	53519	+		27546	23181	18982	19021	31805	31805					0.10455379902521145
IPKGKPKSGR	10	Unmodified	_IPKGKPKSGR_					0	0	0		ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2710571289062	2	534.337833	1066.66111	-0.42706	-0.0002282	4.2553	0.0022738	3.8283	0.0020456	534.3399320339728	62.242	0.50594	62.028	61.662	62.168	-0.21375					23	12	3	0	0	0	0.03519	1	6957	6957		31.53	9.5699	1	209050			27547	3024	18983	19022	31806	31806					0.1304481973379552
IPKGWALTI	9	Unmodified	_IPKGWALTI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2875061035156	2	499.805303	997.596052	0.7241	0.00036191	-1.2191	-0.00060932	-0.49502	-0.00024741	499.8065799243043	55.669	0.2123	55.669	55.573	55.786	0					7	5	2	0	0	0	0.024205	1	6151	6151		35.618	0	1	55980	+		27548	25017	18984	19023	31807	31807					0.09715825207922535
IPKIEYVLD	9	Unmodified	_IPKIEYVLD_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.314208984375	2	545.313158	1088.61176	-0.47685	-0.00026003	0.91663	0.00049985	0.43978	0.00023982	545.313591124939	100.7	0.98195	100.7	100.14	101.12	0					50	22	3	0	0	0	0.43973	1	12921	12921		63.306	2.3343	1	893870	+		27549	23409	18985	19024	31808	31808					0.07100066934322058
IPKIHSARV	9	Unmodified	_IPKIHSARV_					0	0	0		ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B	ENST00000436674.5_1_22:38617478-38642853:-|nuORF	ENST00000436674.5_1_22:38617478-38642853:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.8083190917969	2	510.819276	1019.624	-0.5212	-0.00026624	-3.2248	-0.0016473	-3.7461	-0.0019136	510.8173860911709	22.034	0.57933	21.832	21.614	22.194	-0.20199					19	11	2	0	0	0	0.024506	1	727	727		30.504	0	1	138170			27550	10201	18986	19025	31809	31809					0.11497148188038864
IPKNPYQYQV	10	Unmodified	_IPKNPYQYQV_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.8742980957031	3	417.224034	1248.65027	-0.68754	-0.00028686	3.0808	0.0012854	2.3933	0.00099854	417.22499570428107	37.097	0.23596	36.877	36.726	36.962	-0.2195					7	5	2	0	0	0	0.03519	1	2962	2962		21.686	0	1	26240			27551	1708	18987	19026	31810	31810					0.03589372568831095
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.80548095703125	2	481.805303	961.596052	-0.58465	-0.00028169	0.39701	0.00019128	-0.18764	-9.0408E-05	481.80529817519846	53.588	0.6866	53.441	53.168	53.855	-0.14723					55	18	4	0	0	0	0.15889	2	5788	5777;5788		97.473	23.498	1	2401100			27552	7591	18988	19027	31811;31812	31812					0.11371825207925212
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.80560302734375	2	481.805303	961.596052	-0.76536	-0.00036876	0.4691	0.00022602	-0.29626	-0.00014274	481.80536203937334	53.367	0.70992	53.462	53.195	53.905	0.095669					47	19	3	0	0	0	0.22754	1	5700	5700		85.359	16.875	1	2556100			27553	7591	18988	19027	31813	31813					0.11371825207925212
IPKPPDLLQ	9	Unmodified	_IPKPPDLLQ_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.79010009765625	2	510.808042	1019.60153	-0.79143	-0.00040427	3.9092	0.0019969	3.1178	0.0015926	510.8106955574872	43.225	0.37695	42.999	42.793	43.17	-0.22597					12	9	2	0	0	0	0.024487	1	3915	3915		24.203	20.793	1	91148			27554	4796	18989	19028	31814	31814					0.09251503999769284
IPKPPWPQ	8	Unmodified	_IPKPPWPQ_					0	0	0		ENST00000397261.7_1_3:9848328-9848454:+|nuORF	ENST00000397261.7_1_3:9848328-9848454:+|nuORF	ENST00000397261.7_1_3:9848328-9848454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2642822265625	2	481.776545	961.538538	-0.54333	-0.00026176	-4.0332	-0.0019431	-4.5766	-0.0022049	481.77459259706194	37.668	1.0905	37.701	37.112	38.202	0.032269					41	29	2	0	0	0	0.027866	1	3035	3035		19.36	1.0356	1	1036200			27555	13589	18990	19029	31815	31815					0.056229830023767136
IPKQQTCVGY	10	Unmodified	_IPKQQTCVGY_					0	0	0			REV__ENSG00000135605|ENST00000381501|TEC	REV__ENSG00000135605|ENST00000381501|TEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8287353515625	2	568.792066	1135.56958	0.1966	0.00011182	-2.6851	-0.0015272	-2.4885	-0.0014154	568.7908462024077	50.337	0.45245	50.232	49.856	50.309	-0.10558					17	11	2	0	0	0	0.03519	1	5084	5084		39.253	13.679	1	100110	+		27556	23560	18991	19030	31816	31816					0.007217682543114279
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENST00000473909.5_1_3:160939100-160952664:+|nuORF;ENSG00000169251|ENST00000351193|NMD3	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8009033203125	2	509.800217	1017.58588	0.79009	0.00040279	-1.9673	-0.0010029	-1.1772	-0.00060016	509.7993478403479	59.317	0.9516	59.317	58.999	59.951	0					75	25	5	0	0	0	0.19099	1	6783	6783		90.37	18.992	1	4382000			27557	7918	18992	19031	31817	31817					0.07779217482720924
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENST00000473909.5_1_3:160939100-160952664:+|nuORF;ENSG00000169251|ENST00000351193|NMD3	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8009338378906	2	509.800217	1017.58588	0.8071	0.00041146	-1.4465	-0.00073745	-0.63945	-0.00032599	509.799419966965	59.499	1.4131	59.299	58.562	59.975	-0.20016					62	30	4	0	0	0	0.28753	1	6779	6779		77.318	3.3428	1	4847400			27558	7918	18992	19031	31818	31818					0.07779217482720924
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENST00000473909.5_1_3:160939100-160952664:+|nuORF;ENSG00000169251|ENST00000351193|NMD3	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8006591796875	2	509.800217	1017.58588	0.084636	4.3147E-05	-1.0469	-0.0005337	-0.96225	-0.00049056	509.799711589147	59.163	1.6138	59.249	58.442	60.056	0.085682					70	33	4	0	0	0	0.28753	1	6681	6681		77.318	11.514	1	4382200			27559	7918	18992	19031	31819	31819					0.07779217482720924
IPKSFKFG	8	Unmodified	_IPKSFKFG_					0	0	0			REV__nc|ENSG00000124789|P49790-3|NUP153	REV__nc|ENSG00000124789|P49790-3|NUP153	MSMS	OPSCC_40_ClassI_Rep-1	4	462.27020263671875	2	462.271096	922.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.12	1	101.99	101.49	102.49	-0.12931								0	0	0	0.90755	1	12677	12677		26.796	2.5934	1		+		27560	36632	18993	19032	31820	31820					0.0632758062808989
IPKSKTKEQIL	11	Unmodified	_IPKSKTKEQIL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.9346008300781	3	428.934372	1283.78129	-0.64166	-0.00027523	0.35169	0.00015085	-0.28997	-0.00012438	428.934538966379	28.441	0.99908	28.196	27.882	28.881	-0.24524					79	23	5	0	0	0	0.30495	2	1650	1650;1661		89.029	25.602	1	2928600			27561	4877	18994	19033	31821;31822	31821					0.15074763216898646
IPKSKTKEQIL	11	Unmodified	_IPKSKTKEQIL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.9344482421875	3	428.934372	1283.78129	-0.33424	-0.00014337	0.054054	2.3186E-05	-0.28018	-0.00012018	428.9344369903141	28.321	1.0046	28.152	27.807	28.812	-0.16897					79	23	5	0	0	0	0.30495	3	1626	1626;1636;1649		89.029	27.338	1	3043300			27562	4877	18994	19033	31823;31824;31825	31823					0.15074763216898646
IPKSKTKEQIL	11	Unmodified	_IPKSKTKEQIL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.934326171875	3	428.934372	1283.78129	-0.13929	-5.9748E-05	-0.13356	-5.7287E-05	-0.27285	-0.00011704	428.93435049927234	28.427	0.95379	28.275	28	28.954	-0.15195					69	22	4	0	0	0	0.48544	1	1645	1645		77.288	9.7941	1	3525800			27563	4877	18994	19033	31826	31826					0.15074763216898646
IPKTSGSEM	9	Unmodified	_IPKTSGSEM_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.2365417480469	2	475.236593	948.458632	-0.40896	-0.00019435	-0.039341	-1.8696E-05	-0.4483	-0.00021305	475.23650119322235	29.592	0.84056	29.592	29.296	30.137	0					37	20	2	0	0	0	0.19099	2	1849	1823;1849		90.37	27.064	1	2131300			27564	8745	18995	19034	31827;31828	31828					-0.017658714537788
IPKTSGSEM	9	Unmodified	_IPKTSGSEM_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.23638916015625	2	475.236593	948.458632	-0.076402	-3.6309E-05	-0.47175	-0.00022419	-0.54816	-0.0002605	475.2362974990043	29.568	0.84423	29.571	29.314	30.158	0.0031357					50	20	4	0	0	0	0.053401	3	1820	1805;1820;1834		127.46	45.157	1	2496300			27565	8745	18995	19034	31829;31830;31831	31830					-0.017658714537788
IPKTSGSEM	9	Oxidation (M)	_IPKTSGSEM(Oxidation (M))_		IPKTSGSEM(1)		IPKTSGSEM(120)	0	0	1		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2341003417969	2	483.23405	964.453547	-0.70218	-0.00033932	0.64502	0.00031169	-0.057163	-2.7623E-05	483.234195585965	23.581	2.6111	23.52	21.953	24.564	-0.06086					128	58	3	0	0	0	0.062622	2	958	933;958		124.08	58.183	1	667670			27566	8745	18995	19035	31832;31833	31833		366			-0.03010175316387631
IPKTSGSEM	9	Oxidation (M)	_IPKTSGSEM(Oxidation (M))_					0	0	1		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.23405	964.453547	-0.3298	-0.00015937	0.14788	7.1459E-05	-0.18193	-8.7914E-05	483.23394987353055	23.529	3.3148	23.529	21.293	24.608	0	0.004004	-0.00024298	NaN	124.08	147	73	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614110			27567	8745	18995	19035				366			-0.03010175316387631
IPLCRWLP	8	Unmodified	_IPLCRWLP_					0	0	0		ENST00000424358.1_1_20:33865191-33865500:-|nuORF;ENST00000435366.2_2_20:33865018-33865500:-|nuORF	ENST00000424358.1_1_20:33865191-33865500:-|nuORF	ENST00000424358.1_1_20:33865191-33865500:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.83160400390625	2	499.286223	996.557893	-1.1453	-0.00057182	3.6396	0.0018172	2.4943	0.0012454	499.2877903831338	44.718	0.34945	44.507	44.327	44.677	-0.21109					11	8	2	0	0	0	0.027866	1	4181	4181		44.531	10.359	1	67376			27568	14040	18996	19036	31834	31834					0.05947616021626345
IPLFKPPKK	9	Unmodified	_IPLFKPPKK_					0	0	0			REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3318481445312	2	534.35242	1066.69029	-1.4806	-0.00079114	-3.7112	-0.0019831	-5.1918	-0.0027742	534.3498297646456	44.372	0.33645	44.372	44.183	44.519	0					14	9	2	0	0	0	0.024541	1	4216	4216		26.796	8.4717	1	153010	+		27569	23433	18997	19037	31835	31835					0.1596096403006868
IPLGGDLMAVG	11	Unmodified	_IPLGGDLMAVG_					0	0	0		ENST00000462392.5_1_2:131104212-131104311:+|nuORF	ENST00000462392.5_1_2:131104212-131104311:+|nuORF	ENST00000462392.5_1_2:131104212-131104311:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.23828125	2	521.78371	1041.55287	-0.32964	-0.000172	-2.9559	-0.0015423	-3.2855	-0.0017143	521.7822188370961	63.746	0.29482	63.519	63.291	63.585	-0.22773					11	7	2	0	0	0	0.024776	1	7198	7198		58.782	2.0609	1	131670			27570	14707	18998	19038	31836	31836					0.03375267368346613
IPLGPKLS	8	Unmodified	_IPLGPKLS_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA;REV__LRBA-SH3D19|2|fusion	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2455139160156	2	412.765646	823.516739	-0.38514	-0.00015897	0.35421	0.00014621	-0.030929	-1.2767E-05	412.76593561185757	31.108	0.82133	30.923	30.618	31.44	-0.18503					26	20	2	0	0	0	0.027866	1	2053	2053		37.159	0	1	82327	+		27571	28437;36318	18999	19039	31837	31837					0.09792178253792372
IPLILIMLI	9	Unmodified	_IPLILIMLI_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|204|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|204|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.8204956054688	2	519.853407	1037.69226	0.5265	0.0002737	0.93097	0.00048397	1.4575	0.00075767	520.3575012790275	80.704	0.44981	80.498	80.257	80.707	-0.20632					18	10	3	0	0	0	0.024475	1	9718	9718		21.702	7.0382	1	290780	+		27572	36288	19000	19040	31838	31838					0.17492256723653554
IPLIVEKSGVP	11	Unmodified	_IPLIVEKSGVP_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.3523559570312	2	576.355357	1150.69616	-1.0769	-0.00062066	-2.0995	-0.0012101	-3.1764	-0.0018307	576.3541284170691	44.824	0.99071	44.675	44.355	45.346	-0.1488					97	28	6	0	0	0	0.96599	1	4307	4307		44.377	5.1244	1	5740900	+		27573	25129	19001	19041	31839	31839					0.12684017751098509
IPLLFHIN	8	Unmodified	_IPLLFHIN_					0	0	0			REV__ENST00000569279.1_1_17:72602458-72602677:+|nuORF	REV__ENST00000569279.1_1_17:72602458-72602677:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	483.79388427734375	2	483.792195	965.569838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.979	1	57.801	57.301	58.301	-0.17775								0	0	0	0.38374	1	6355	6355		69.093	3.1955	1		+		27574	35368	19002	19042	31840	31840					0.08567556036462065
IPLLLPVAW	9	Unmodified	_IPLLLPVAW_					0	0	0		ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.3271789550781	2	511.325871	1020.63719	0.38036	0.00019449	2.1636	0.0011063	2.544	0.0013008	511.32684664670245	96.235	1.1549	96.098	95.725	96.88	-0.13671					63	26	4	0	0	0	0.93795	2	11919	11861;11919		29.842	8.1392	1	1446800			27575	3754	19003	19043	31841;31842	31842					0.12769586247407005
IPLLMLLSL	9	Unmodified	_IPLLMLLSL_					0	0	0		ENSG00000129951|ENST00000520876|PLPPR3;nc|ENSG00000129951|Q6T4P5-2|PLPPR3;nc|ENSG00000129951|Q6T4P5-3|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8280944824219	2	506.827389	1011.64023	-0.08562	-4.3395E-05	3.774	0.0019128	3.6884	0.0018694	506.82915667050565	67.779	0.82965	67.49	67.187	68.017	-0.28834					50	20	4	0	0	0	0.26797	1	8071	8071		79.939	5.6842	1	1928800			27576	4374	19004	19044	31843	31843					0.13487093309925058
IPLMKKAQ	8	Unmodified	_IPLMKKAQ_					0	0	0			REV__ENST00000550254.1_1_12:49580073-49582762:-|nuORF	REV__ENST00000550254.1_1_12:49580073-49582762:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2566223144531	2	464.786056	927.557558	-0.18837	-8.7552E-05	-2.7459	-0.0012762	-2.9342	-0.0013638	464.7847204358175	27.328	0.36414	27.41	27.319	27.684	0.081293					14	9	2	0	0	0	0.027866	1	1424	1424		17.365	0	1	78226	+		27577	34902	19005	19045	31844	31844					0.09088196301775042
IPLNGDRL	8	Unmodified	_IPLNGDRL_					0	0	0		nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.2614440917969	2	449.261259	896.507966	0.35576	0.00015983	-0.37595	-0.0001689	-0.020187	-9.0691E-06	449.2610018071674	41.143	0.95802	41.143	40.835	41.793	0					66	26	3	0	0	0	0.50239	1	3674	3674		85.359	5.4203	1	5297500			27578	2399	19006	19046	31845	31845					0.055572046173210765
IPLNGTWLF	9	Unmodified	_IPLNGTWLF_					0	0	0		ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.79638671875	2	530.794935	1059.57532	0.25096	0.00013321	-0.20456	-0.00010858	0.046403	2.4631E-05	530.7946318063322	95.793	1.6839	95.67	95.291	96.974	-0.12251					88	36	3	0	0	0	0.39228	1	11843	11843		66.429	5.4573	1	952940			27579	8228	19007	19047	31846	31846					0.04791234828257984
IPLNLGVGTA	10	Unmodified	_IPLNLGVGTA_					0	0	0			REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2695617675781	2	477.784567	953.554582	-0.72177	-0.00034485	1.7981	0.00085911	1.0763	0.00051426	477.78497008202964	35.493	0.39769	35.471	35.271	35.669	-0.021763					14	9	2	0	0	0	0.03519	1	2701	2701		29.15	14.285	1	43763	+		27580	29010	19008	19048	31847	31847					0.07594644448613508
IPLNQGNL	8	Unmodified	_IPLNQGNL_					0	0	0			REV__PSG6|p.M188I|1|0.38|ENSG00000170848|chr19:42910722-42910722|C/T|missense_variant	REV__PSG6|p.M188I|1|0.38|ENSG00000170848|chr19:42910722-42910722|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	434.747985	867.481417	-0.15061	-6.5476E-05	0.59739	0.00025972	0.44679	0.00019424	434.74825768338684	46.608	0.20354	46.414	46.309	46.512	-0.19387					7	5	2	0	0	0	0.027866	1	4500	4500		17.365	0	1	88397	+		27581	37413	19009	19049	31848	31848					0.0423751572599258
IPLQRLESYRR	11	Unmodified	_IPLQRLESYRR_					0	0	0		ENSG00000172156|ENST00000305869|CCL11	ENSG00000172156|ENST00000305869|CCL11	ENSG00000172156|ENST00000305869|CCL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.29266357421875	3	477.612404	1429.81538	-0.22585	-0.00010787	3.2239	0.0015398	2.9981	0.0014319	477.9484001988636	46.821	0.37746	46.873	46.721	47.099	0.051399					15	9	2	0	0	0	0.024828	1	4583	4583		18.531	10.124	1	148500			27582	8246	19010	19050	31849	31849					0.11766604428476057
IPLRKRLR	8	Unmodified	_IPLRKRLR_					0	0	0		ENST00000604081.1_1_12:54388685-54388883:-|nuORF	ENST00000604081.1_1_12:54388685-54388883:-|nuORF	ENST00000604081.1_1_12:54388685-54388883:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2984619140625	2	526.364185	1050.71382	-1.7906	-0.0009425	-4.3594	-0.0022946	-6.15	-0.0032371	526.3616660679805	38.25	1.0262	38.25	37.735	38.761	0					54	28	3	0	0	0	0.027866	1	3236	3236		14.664	0	1	318720			27583	17551	19011	19051	31850	31850					0.1904882258725138
IPLSFGIFY	9	Unmodified	_IPLSFGIFY_					0	0	0		ENST00000398645.6_1_11:66887402-66888721:+|nuORF	ENST00000398645.6_1_11:66887402-66888721:+|nuORF	ENST00000398645.6_1_11:66887402-66888721:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7788696289062	2	528.791861	1055.56917	0.17472	9.2389E-05	-2.7332	-0.0014453	-2.5585	-0.0013529	528.789587077971	86.559	0.99045	86.421	85.962	86.953	-0.13734					29	22	2	0	0	0	0.024517	1	10449	10449		19.36	12.167	1	316430			27584	13628	19012	19052	31851	31851					0.04360716596761449
IPLSVYNYM	9	Unmodified	_IPLSVYNYM_					0	0	0		ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8446044921875	2	550.27826	1098.54197	-0.77893	-0.00042863	2.013	0.0011077	1.2341	0.0006791	550.2793192518706	82.41	0.69514	82.27	81.999	82.694	-0.14014					24	15	2	0	0	0	0.02435	1	9964	9964		60.972	7.6205	1	103720			27585	6781	19013	19053	31852	31852					-0.003361350059549295
IPLSVYNYM	9	Unmodified	_IPLSVYNYM_					0	0	0		ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.27826	1098.54197	-0.53887	-0.00029653	2.2009	0.0012111	1.662	0.00091459	550.2792413293121	82.427	0.89318	82.427	82.072	82.965	0	0.1145	0.0011428	NaN	60.972	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144190			27586	6781	19013	19053							-0.003361350059549295
IPLSVYNYM	9	Unmodified	_IPLSVYNYM_					0	0	0		ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant	ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.27826	1098.54197	0.94315	0.000519	1.0337	0.00056884	1.9769	0.0010878	550.2786218339177	82.467	0.88248	82.357	81.842	82.724	-0.11006	0.044295	-0.00014177	NaN	60.972	33	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153940			27587	6781	19013	19053							-0.003361350059549295
IPLTLVMFQSL	11	Unmodified	_IPLTLVMFQSL_					0	0	0		KCNK3|p.M156Tfs*91|1|0.16|ENSG00000171303|chr2:26727850-26727853|TGGC/-|frameshift_variant;ENSG00000169427|ENST00000520439|KCNK9;ENSG00000171303|ENST00000302909|KCNK3	KCNK3|p.M156Tfs*91|1|0.16|ENSG00000171303|chr2:26727850-26727853|TGGC/-|frameshift_variant	KCNK3|p.M156Tfs*91|1|0.16|ENSG00000171303|chr2:26727850-26727853|TGGC/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.2463684082031	3	421.24567	1260.71518	1.3545	0.00057059	-0.21034	-8.8606E-05	1.1442	0.00048199	421.24555285953164	17.464	0.89565	17.31	17.108	18.004	-0.15403					28	17	4	0	0	0	0.98082	1	190	190		41.08	2.3265	1	349460			27588	7939	19014	19054	31853	31853					0.09525231050497496
IPLTLVMFQSL	11	Unmodified	_IPLTLVMFQSL_					0	0	0		KCNK3|p.M156Tfs*91|1|0.16|ENSG00000171303|chr2:26727850-26727853|TGGC/-|frameshift_variant;ENSG00000169427|ENST00000520439|KCNK9;ENSG00000171303|ENST00000302909|KCNK3	KCNK3|p.M156Tfs*91|1|0.16|ENSG00000171303|chr2:26727850-26727853|TGGC/-|frameshift_variant	KCNK3|p.M156Tfs*91|1|0.16|ENSG00000171303|chr2:26727850-26727853|TGGC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	421.24567	1260.71518	-0.080025	-3.371E-05	1.8107	0.00076277	1.7307	0.00072906	421.246228047913	17.497	0.39864	17.29	17.116	17.514	-0.20669	-0.0098778	0.0024388	NaN	41.08	11	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33712			27589	7939	19014	19054							0.09525231050497496
IPLVSAGLP	9	Unmodified	_IPLVSAGLP_					0	0	0			REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.7723083496094	2	433.770929	865.527304	0.2178	9.4477E-05	3.1721	0.001376	3.3899	0.0014705	433.77214821640433	72.288	1.1872	72.011	71.352	72.539	-0.2769					68	28	4	0	0	0	0.88411	1	8484	8484		33.516	5.2613	1	1175800	+		27590	32846	19015	19055	31854	31854					0.08916160908222537
IPLVSAGLP	9	Unmodified	_IPLVSAGLP_					0	0	0			REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	433.770929	865.527304	0.6414	0.00027822	2.7648	0.0011993	3.4062	0.0014775	433.772014515473	72.118	1.3779	72.118	71.489	72.867	0	0.058074	-1.4697E-05	NaN	33.516	82	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1699400	+		27591	32846	19015	19055							0.08916160908222537
IPLVSAGLP	9	Unmodified	_IPLVSAGLP_					0	0	0			REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	433.770929	865.527304	0.80433	0.00034889	2.6429	0.0011464	3.4472	0.0014953	433.77195440940744	72.45	1.0957	72.168	71.695	72.791	-0.28124	0.1086	-0.00012043	NaN	33.516	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1818400	+		27592	32846	19015	19055							0.08916160908222537
IPLVSAGLP	9	Unmodified	_IPLVSAGLP_					0	0	0			REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	REV__ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	433.770929	865.527304	0.92008	0.0003991	2.3531	0.0010207	3.2732	0.0014198	433.7718303501669	72.169	1.2445	72.179	71.615	72.859	0.0097733	0.11874	-0.00037184	NaN	33.516	76	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1928800	+		27593	32846	19015	19055							0.08916160908222537
IPMEARLDL	9	Unmodified	_IPMEARLDL_					0	0	0			REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.305419921875	2	529.289159	1056.56377	-0.85624	-0.0004532	-4.1312	-0.0021866	-4.9874	-0.0026398	529.788287739117	64.589	0.71534	64.387	64.184	64.899	-0.20254					23	17	2	0	0	0	0.024457	1	7330	7330		37.159	19.794	1	250480	+		27594	36856	19016	19056	31855	31855					0.037746697426428
IPMILLALI	9	Unmodified	_IPMILLALI_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.8318786621094	2	498.829932	995.645311	-0.7803	-0.00038924	4.3431	0.0021665	3.5628	0.0017772	498.8319696709098	44.353	1.2417	44.353	43.872	45.114	0					80	35	4	0	0	0	0.48384	2	4233	4233;4246		60.404	18.007	1	4715500			27595	8686	19017	19057	31856;31857	31856					0.1473139717252252
IPMILLALI	9	Unmodified	_IPMILLALI_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8310546875	2	498.829932	995.645311	-0.94357	-0.00047068	3.6793	0.0018353	2.7357	0.0013646	498.8317684352171	44.435	1.0845	44.33	44.03	45.115	-0.10468					80	28	4	0	0	0	0.32257	1	4156	4156		72.62	6.8168	1	12242000			27596	8686	19017	19057	31858	31858					0.1473139717252252
IPMILLALI	9	Unmodified	_IPMILLALI_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.8315124511719	2	498.829932	995.645311	-0.8318	-0.00041492	3.6847	0.0018381	2.8529	0.0014231	498.8317813398732	44.597	1.3214	44.353	44.045	45.367	-0.2444					88	35	5	0	0	0	0.48384	2	4150	4150;4162		60.404	7.4669	1	12336000			27597	8686	19017	19057	31859;31860	31859					0.1473139717252252
IPMKEILG	8	Unmodified	_IPMKEILG_					0	0	0		ENSG00000196652|ENST00000326775|ZKSCAN5	ENSG00000196652|ENST00000326775|ZKSCAN5	ENSG00000196652|ENST00000326775|ZKSCAN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7669982910156	2	450.764789	899.515025	0.059998	2.7045E-05	3.7496	0.0016902	3.8096	0.0017173	450.7664617180392	35.299	0.74337	35.084	34.753	35.496	-0.21555					57	18	4	0	0	0	0.65272	1	2653	2653		71.378	2.8932	1	8007400			27598	9906	19018	19058	31861	31861					0.061248011735415275
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.2966003417969	2	510.297842	1018.58113	-0.94007	-0.00047972	-0.32238	-0.00016451	-1.2624	-0.00064423	510.297906710399	62.884	0.57927	62.884	62.651	63.23	0					59	14	6	0	0	0	0.1158	1	7329	7329		107.01	27.295	1	2823200			27599	2081	19019	19059	31862	31862					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.29681396484375	2	510.297842	1018.58113	-0.48452	-0.00024725	-0.24201	-0.0001235	-0.72653	-0.00037075	510.29766817008647	63.129	0.66159	62.89	62.615	63.276	-0.23926					46	16	4	0	0	0	0.22902	1	7335	7335		85.161	13.865	1	2533400			27600	2081	19019	19059	31863	31863					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2964172363281	2	510.297842	1018.58113	0.35225	0.00017975	-1.6033	-0.00081814	-1.251	-0.00063839	510.29727394372725	62.859	0.62776	62.913	62.64	63.267	0.054104					62	15	6	0	0	0	0.043667	1	7245	7245		131.03	43.277	1	2348400			27601	2081	19019	19059	31864	31864					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2973937988281	2	510.297842	1018.58113	0.025276	1.2898E-05	-0.29475	-0.00015041	-0.26948	-0.00013751	510.29749656285753	63.112	0.57087	62.891	62.648	63.219	-0.22097					31	13	3	0	0	0	0.043667	2	7127	7115;7127		131.03	41.969	1	1133300			27602	2081	19019	19059	31865;31866	31866					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.29766845703125	2	510.297842	1018.58113	-0.48032	-0.0002451	-0.11978	-6.1122E-05	-0.60009	-0.00030623	510.2976002877344	63.074	0.6012	62.891	62.671	63.272	-0.18386					33	14	3	0	0	0	0.013094	2	7111	7111;7121		171.38	41.702	1	1414500			27603	2081	19019	19059	31867;31868	31867					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2969055175781	2	510.297842	1018.58113	0.038899	1.985E-05	-0.34223	-0.00017464	-0.30333	-0.00015479	510.2975324217213	63.203	0.56965	62.945	62.706	63.276	-0.25824					35	13	3	0	0	0	0.043667	2	7115	7115;7129		131.03	40.662	1	1385100			27604	2081	19019	19059	31869;31870	31869					0.07258333339939327
IPNERTMQL	9	Unmodified	_IPNERTMQL_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.2891845703125	2	551.289691	1100.56483	-0.62713	-0.00034573	0.021929	1.2089E-05	-0.60521	-0.00033364	551.2896496202643	48.068	2.6246	48.068	47.181	49.805	0					131	75	3	0	0	0	0.14181	1	4889	4889		101.25	8.0572	1	3762300			27605	10639	19020	19060	31871	31871					0.018568841115438772
IPNERTMQL	9	Unmodified	_IPNERTMQL_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2891845703125	2	551.289691	1100.56483	-0.98569	-0.0005434	0.25882	0.00014268	-0.72687	-0.00040071	551.2898472046828	48.197	2.0001	48.044	47.669	49.669	-0.15301					110	56	3	0	0	0	0.26413	2	4895	4882;4895		80.455	10.631	1	3543800			27606	10639	19020	19060	31872;31873	31873					0.018568841115438772
IPNERTMQL	9	Unmodified	_IPNERTMQL_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.2896728515625	2	551.289691	1100.56483	-0.88646	-0.00048869	0.14009	7.7232E-05	-0.74636	-0.00041146	551.289876680173	47.864	2.2661	47.926	47.525	49.791	0.061691					108	63	2	0	0	0	0.12933	2	4795	4795;4808		104.01	31.134	1	3458300			27607	10639	19020	19060	31874;31875	31874					0.018568841115438772
IPNERTMQL	9	Unmodified	_IPNERTMQL_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.2894287109375	2	551.289691	1100.56483	-0.54156	-0.00029855	-1.5238	-0.00084004	-2.0653	-0.0011386	551.2895515559901	47.964	1.0275	47.866	47.557	48.584	-0.097553					68	27	4	0	0	0	0.22902	1	4730	4730		85.161	2.4103	1	2585200			27608	10639	19020	19060	31876	31876					0.018568841115438772
IPNERTMQL	9	Unmodified	_IPNERTMQL_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.2891235351562	2	551.289691	1100.56483	-0.93177	-0.00051368	-1.2098	-0.00066696	-2.1416	-0.0011806	551.2897104526434	48.303	0.98418	48.027	47.701	48.685	-0.27598					73	26	5	0	0	0	0.26413	1	4777	4777		80.455	12.961	1	2927800			27609	10639	19020	19060	31877	31877					0.018568841115438772
IPNERTMQL	9	Unmodified	_IPNERTMQL_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.2891235351562	2	551.289691	1100.56483	0.092773	5.1145E-05	-2.3196	-0.0012788	-2.2268	-0.0012276	551.2891090948781	48.062	1.1368	47.875	47.561	48.698	-0.18684					75	30	4	0	0	0	0.18994	3	4735	4735;4745;4757		90.601	7.8504	1	2524900			27610	10639	19020	19060	31878;31879;31880	31878					0.018568841115438772
IPNISTASWM	10	Unmodified	_IPNISTASWM_					0	0	0		ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	ENSG00000081803|ENST00000449022|CADPS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8248291015625	2	560.278792	1118.54303	-1.0977	-0.00061499	-1.9583	-0.0010972	-3.0559	-0.0017122	560.2778601940722	31.025	0.87234	31.025	30.343	31.216	0					35	20	2	0	0	0	0.03519	1	1987	1987		58.782	10.866	1	94794			27611	1715	19021	19061	31881	31881					-0.011499206370217507
IPNRFLATFV	10	Unmodified	_IPNRFLATFV_					0	0	0			REV__ENST00000487903.5_1_13:113537947-113538172:+|nuORF	REV__ENST00000487903.5_1_13:113537947-113538172:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.343505859375	2	589.340041	1176.66553	1.0167	0.00059916	4.1511	0.0024464	5.1678	0.0030456	589.3423343828981	95.387	0.97767	95.391	95.14	96.117	0.0041199					55	22	4	0	0	0	1.1267	1	12079	12079		29.15	2.4566	1	622320	+		27612	33628	19022	19062	31882	31882					0.0842628415668969
IPNRFYYQ	8	Unmodified	_IPNRFYYQ_					0	0	0		ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8087768554688	2	550.779816	1099.54508	0.022666	1.2484E-05	-1.3836	-0.00076208	-1.361	-0.00074959	550.7784098977528	56.046	0.25555	55.829	55.702	55.958	-0.21607					8	6	2	0	0	0	0.027866	1	6065	6065		19.36	0	1	345850			27613	720	19023	19063	31883	31883					-0.0007112383691492141
IPNRGIDL	8	Unmodified	_IPNRGIDL_					0	0	0		nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENSG00000015479|ENST00000394805|MATR3	nc|ENSG00000280987|P43243-2|MATR3	nc|ENSG00000280987|P43243-2|MATR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.261474609375	2	449.261259	896.507966	0.369	0.00016578	-0.18924	-8.5018E-05	0.17976	8.0759E-05	449.26097614386697	41.319	1.1088	41.196	40.725	41.834	-0.12317					110	30	6	0	0	0	0.6248	1	3677	3677		73.975	2.679	1	5645000			27614	932	19024	19064	31884	31884					0.05557204617343814
IPNRGIDL	8	Unmodified	_IPNRGIDL_					0	0	0		nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENSG00000015479|ENST00000394805|MATR3	nc|ENSG00000280987|P43243-2|MATR3	nc|ENSG00000280987|P43243-2|MATR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.2613830566406	2	449.261259	896.507966	-0.50704	-0.00022779	0.17221	7.7369E-05	-0.33482	-0.00015042	449.26128935072717	41.487	0.83688	41.257	40.925	41.761	-0.23029					53	21	3	0	0	0	0.56592	2	3636	3636;3671		79.451	5.495	1	7148100			27615	932	19024	19064	31885;31886	31885					0.05557204617343814
IPNRIPNLP	9	Unmodified	_IPNRIPNLP_					0	0	0			REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF	REV__ENST00000546616.1_1_14:105609034-105613077:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8274536132812	2	517.311284	1032.60801	-0.20075	-0.00010385	0.75931	0.0003928	0.55855	0.00028895	517.3110270173032	34.94	0.63285	34.724	34.467	35.1	-0.21555					20	15	2	0	0	0	0.024487	1	2627	2627		24.203	0	1	200820	+		27616	27710	19025	19065	31887	31887					0.09301441951129163
IPNSCGPI	8	Carbamidomethyl (C)	_IPNSC(Carbamidomethyl (C))GPI_	IPNSC(1)GPI		IPNSC(77)GPI		0	1	0			REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.276611328125	2	429.212921	856.411288	-0.092599	-3.9745E-05	0.78748	0.000338	0.69488	0.00029825	429.21319105910976	43.325	0.59179	43.088	42.759	43.351	-0.23736					28	15	2	0	0	0	0.027866	1	3933	3933		76.847	32.73	1	244670	+		27617	30766	19026	19066	31888	31888	400				-0.02266105934108964
IPNSCGPI	8	Carbamidomethyl (C)	_IPNSC(Carbamidomethyl (C))GPI_					0	1	0			REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	429.212921	856.411288	-0.33279	-0.00014284	0.87615	0.00037606	0.54336	0.00023322	429.21317691922906	42.955	0.83323	42.955	42.534	43.367	0	-0.064168	0.0002823	NaN	76.847	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543410	+		27618	30766	19026	19066			400				-0.02266105934108964
IPNSCGPI	8	Carbamidomethyl (C)	_IPNSC(Carbamidomethyl (C))GPI_					0	1	0			REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	429.212921	856.411288	-0.12438	-5.3385E-05	0.67748	0.00029078	0.5531	0.0002374	429.21312435404496	43.037	0.83492	42.898	42.558	43.393	-0.13929	-0.12112	0.00011176	NaN	76.847	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615670	+		27619	30766	19026	19066			400				-0.02266105934108964
IPNSCGPI	8	Carbamidomethyl (C)	_IPNSC(Carbamidomethyl (C))GPI_					0	1	0			REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	REV__ENST00000354955.4_1_1:203311174-203311249:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	429.212921	856.411288	0.65291	0.00028024	0.031214	1.3398E-05	0.68413	0.00029364	429.2127565800785	42.958	0.80352	42.989	42.609	43.413	0.030823	-0.030078	-0.00044301	NaN	76.847	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	702450	+		27620	30766	19026	19066			400				-0.02266105934108964
IPNSGMDHT	9	Unmodified	_IPNSGMDHT_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.216552734375	2	486.216192	970.41783	0.28892	0.00014048	-4.0685	-0.0019782	-3.7796	-0.0018377	486.2144773560208	97.787	3.7885	97.785	95.99	99.778	-0.0020752					163	87	3	0	0	0	0.94809	1	12582	12582		29.15	1.2673	1	279470			27621	1421	19027	19067	31889	31889					-0.06856212773402603
IPNSLLPE	8	Unmodified	_IPNSLLPE_					0	0	0		ENST00000377518.3_1_9:46687596-46687819:-|nuORF;ENST00000450704.1_1_9:46843779-46844187:+|nuORF	ENST00000377518.3_1_9:46687596-46687819:-|nuORF	ENST00000377518.3_1_9:46687596-46687819:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7679748535156	2	441.750193	881.485833	0.14472	6.3931E-05	3.6776	0.0016246	3.8223	0.0016885	441.7519676650636	102.76	0.38708	102.76	102.67	103.05	0.0054245					15	9	2	0	0	0	0.027866	1	13154	13154		17.365	0	1	439210			27622	13209	19028	19068	31890	31890					0.04034980148912837
IPNSLLPE	8	Unmodified	_IPNSLLPE_					0	0	0		ENST00000377518.3_1_9:46687596-46687819:-|nuORF;ENST00000450704.1_1_9:46843779-46844187:+|nuORF	ENST00000377518.3_1_9:46687596-46687819:-|nuORF	ENST00000377518.3_1_9:46687596-46687819:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.767822265625	2	441.750193	881.485833	0.092769	4.0981E-05	3.5529	0.0015695	3.6457	0.0016105	441.75172161593645	103	0.43923	102.87	102.63	103.07	-0.12724					16	10	2	0	0	0	0.027866	1	12807	12807		12.959	0	1	125730			27623	13209	19028	19068	31891	31891					0.04034980148912837
IPNYPKKL	8	Unmodified	_IPNYPKKL_					0	0	0			REV__ENST00000548535.1_1_12:76779917-76783618:-|nuORF	REV__ENST00000548535.1_1_12:76779917-76783618:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.79638671875	2	486.797478	971.580402	0.9484	0.00046168	-0.85241	-0.00041495	0.095983	4.6724E-05	486.79670932372636	59.459	0.60346	59.459	59.108	59.711	0					50	15	4	0	0	0	0.81662	1	6790	6790		57.811	0	1	4091700	+		27624	20895	19029	19069	31892	31892					0.09347538690883539
IPPATWVA	8	Unmodified	_IPPATWVA_					0	0	0			REV__ENSG00000269433|ENST00000599405|OPN1MW3	REV__ENSG00000269433|ENST00000599405|OPN1MW3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.2621154785156	2	427.742171	853.469789	-0.24863	-0.00010635	0.25098	0.00010736	0.0023519	1.006E-06	427.7421913177915	91.07	0.53114	90.947	90.754	91.286	-0.12341					17	12	2	0	0	0	0.027866	1	11159	11159		44.531	7.372	1	144840	+		27625	21284	19030	19070	31893	31893					0.03719318702644614
IPPGHIPK	8	Unmodified	_IPPGHIPK_					0	0	0		MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-3|MARVELD2;ENSG00000152939|ENST00000325631|MARVELD2	MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7851257324219	2	429.763438	857.512323	-0.28388	-0.000122	3.5139	0.0015101	3.23	0.0013881	429.7653234712807	26.754	0.20794	26.59	26.458	26.666	-0.16331					6	4	2	0	0	0	0.027866	1	1399	1399		13.775	5.544	1	29249			27626	6308	19031	19071	31894	31894					0.0778671383091023
IPPKLIPL	8	Unmodified	_IPPKLIPL_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10;ENST00000496955.1_1_6:30571493-30571981:-|nuORF	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.74554443359375	2	445.807314	889.600075	2.2096	0.00098507	2.2257	0.00099222	4.4353	0.0019773	445.8078670765672	24.678	0.17241	24.497	24.418	24.59	-0.18089					5	3	2	0	0	0	0.027866	1	1083	1083		5.0869	0	1	15391			27627	10355	19032	19072	31895	31895					0.15085914701671754
IPPPLLKML	9	Unmodified	_IPPPLLKML_					0	0	0			REV__ENSG00000176102|ENST00000323959|CSTF3	REV__ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.32720947265625	2	511.327556	1020.64056	0.38036	0.00019449	-1.1325	-0.0005791	-0.75218	-0.00038461	511.32684664670245	96.235	1.1549	96.098	95.725	96.88	-0.13671					63	26	4	0	0	0	0.90698	1	11907	11907		31.955	6.5047	1	1446800	+		27628	26995	19033	19073	31896	31896					0.13106513029777034
IPPQDWLD	8	Unmodified	_IPPQDWLD_					0	0	0		ENST00000424720.2_12:132824120-132905933:-|nuORF;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000424720.2_12:132824120-132905933:-|nuORF	ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2101135253906	2	492.245275	982.475997	0.20585	0.00010133	0.45805	0.00022547	0.6639	0.0003268	492.24490234308826	49.43	0.64713	49.248	48.921	49.569	-0.18206					32	16	3	0	0	0	0.027866	1	4990	4990		31.955	0	1	363760			27629	9172	19034	19074	31897	31897					-0.015942078564876283
IPPRCGLPK	9	Unmodified	_IPPRCGLPK_					0	0	0			REV__ENST00000591851.5_1_17:76047306-76073478:+|nuORF	REV__ENST00000591851.5_1_17:76047306-76073478:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.75567626953125	2	490.78913	979.563706	-0.80032	-0.00039279	-1.1005	-0.00054013	-1.9009	-0.00093292	490.7878922721446	43.687	0.18127	43.542	43.388	43.569	-0.14471					6	4	2	0	0	0	0.024541	1	4087	4087		17.365	0	1	132940	+		27630	20616	19035	19075	31898	31898					0.07310714533309692
IPPTVTIPNL	10	Unmodified	_IPPTVTIPNL_					0	0	0			REV__PCDH15|p.I299T|1|0.26|ENSG00000150275|chr10:54236912-54236912|A/G|missense_variant	REV__PCDH15|p.I299T|1|0.26|ENSG00000150275|chr10:54236912-54236912|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.842529296875	2	532.82115	1063.62775	-1.3324	-0.00070992	1.4499	0.00077252	0.11751	6.2609E-05	532.821341427712	51.629	0.69864	51.716	51.264	51.963	0.087006					34	19	3	0	0	0	0.03519	1	5363	5363		27.882	7.8855	1	254950	+		27631	37353	19036	19076	31899	31899					0.09847773171213703
IPQFADPQVQE	11	Unmodified	_IPQFADPQVQE_					0	0	0			REV__nc|ENSG00000107036|Q4ADV7-3|RIC1	REV__nc|ENSG00000107036|Q4ADV7-3|RIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.5463562011719	3	424.547065	1270.61937	0.17676	7.5044E-05	-2.5806	-0.0010956	-2.4039	-0.0010206	424.54595992791525	18.094	0.59477	17.887	17.664	18.259	-0.20669					21	11	2	0	0	0	1.0059	1	245	245		35.496	1.4091	1	283000	+		27632	21652	19037	19077	31900	31900					-0.005118255360457624
IPQFRGPQ	8	Unmodified	_IPQFRGPQ_					0	0	0		EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4	EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant	EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2941589355469	2	471.761426	941.5083	0.37489	0.00017686	-3.344	-0.0015776	-2.9691	-0.0014007	471.7606900798507	32.157	0.4344	31.964	31.771	32.205	-0.19261					11	9	2	0	0	0	0.027866	1	2219	2219		31.955	8.9124	1	52956			27633	690	19038	19078	31901	31901					0.035206243371817436
IPQITLNFVDL	11	Unmodified	_IPQITLNFVDL_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.9139709472656	3	424.911456	1271.71254	-0.67753	-0.00028789	3.3365	0.0014177	2.659	0.0011298	424.91269257901234	39.098	1.2978	39.098	38.473	39.771	0					99	35	5	0	0	0	0.98069	1	3337	3337		41.109	3.5091	1	12888000			27634	1184	19039	19079	31902	31902					0.08755098917163195
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.2472839355469	3	409.24695	1224.71902	0.3861	0.00015801	-0.75804	-0.00031022	-0.37194	-0.00015221	409.2466817578181	37.591	1.5283	37.591	37.269	38.797	0					127	42	5	0	0	0	0.55987	4	3098	3062;3084;3098;3109		81.525	23.081	1	11619000			27635	7461	19040	19080	31903;31904;31905;31906	31905					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.2474060058594	3	409.24695	1224.71902	-0.094716	-3.8762E-05	-0.087119	-3.5653E-05	-0.18183	-7.4415E-05	409.24695290906067	37.484	1.6101	37.421	37.091	38.701	-0.063389					138	44	5	0	0	0	0.60734	4	3022	3022;3032;3045;3057		76.17	21.393	1	10273000			27636	7461	19040	19080	31907;31908;31909;31910	31907					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.2474670410156	3	409.24695	1224.71902	0.42019	0.00017196	-0.72753	-0.00029774	-0.30734	-0.00012578	409.2466928399336	37.663	1.5127	37.696	37.303	38.815	0.032269					135	41	5	0	0	0	0.42599	4	3017	3008;3017;3028;3080		96.034	44.841	1	9816200			27637	7461	19040	19080	31911;31912;31913;31914	31912					0.11565036868546485
IPQKSDTTY	9	Unmodified	_IPQKSDTTY_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.7662963867188	2	526.766571	1051.51859	-0.5622	-0.00029615	1.2524	0.00065974	0.69022	0.00036359	526.7669849737654	58.038	0.77076	58.038	57.835	58.606	0					57	20	5	0	0	0	0.67687	1	6569	6569		47.657	1.2006	1	2971200			27638	247	19041	19081	31915	31915					-0.005108575189069597
IPQLGAWL	8	Unmodified	_IPQLGAWL_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.261474609375	2	449.263271	896.511988	0.10115	4.5441E-05	-4.4143	-0.0019832	-4.3131	-0.0019377	449.2611045981265	41.32	1.0194	41.343	40.97	41.99	0.023006					101	28	6	0	0	0	0.67787	1	3637	3637		69.093	0.30614	1	5774200	+		27639	21664	19042	19082	31916	31916					0.05959294111039526
IPQLRSPLT	9	Unmodified	_IPQLRSPLT_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4|HDAC7	REV__nc|ENSG00000061273|Q8WUI4|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.8104248046875	2	512.811116	1023.60768	-0.59132	-0.00030324	0.35999	0.00018461	-0.23134	-0.00011863	512.8112239906359	58.015	0.98623	58.106	57.759	58.745	0.091217					68	26	4	0	0	0	0.23085	1	6461	6461		84.916	14.099	1	7491900	+		27640	20256	19043	19083	31917	31917					0.09682022231265819
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.32012939453125	2	482.32112	962.627687	0.21424	0.00010333	0.019576	9.4418E-06	0.23382	0.00011278	482.3210558779644	68.56	0.58293	68.268	68.013	68.596	-0.29267					35	14	3	0	0	0	0.78069	1	8193	8193		40.573	0	1	1239300			27641	7497	19044	19084	31918	31918					0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.3206787109375	2	482.32112	962.627687	0.18211	8.7836E-05	0.089176	4.3011E-05	0.27129	0.00013085	482.3210001099869	68.277	0.53024	68.296	68.042	68.573	0.018913					34	13	3	0	0	0	0.55828	1	8109	8109		55.504	10.973	1	1197100			27642	7497	19044	19084	31919	31919					0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.32112	962.627687	0.21112	0.00010183	0.095662	4.614E-05	0.30678	0.00014797	482.32099732345	68.237	0.5331	68.237	67.987	68.52	0	-0.00036825	0.0001468	NaN	55.504	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1220700			27643	7497	19044	19084							0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	482.32112	962.627687	-0.0085038	-4.1016E-06	0.175	8.4406E-05	0.1665	8.0305E-05	482.3211505326788	68.519	0.40308	68.257	68.021	68.424	-0.26166	0.020013	0.00022334	NaN	55.504	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160380			27644	7497	19044	19084							0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	482.32112	962.627687	0.32361	0.00015609	0.027028	1.3036E-05	0.35064	0.00016912	482.3209934013094	68.459	0.43913	68.216	67.951	68.39	-0.24277	-0.020916	8.0597E-05	NaN	55.504	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217880			27645	7497	19044	19084							0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	482.32112	962.627687	0.73001	0.0003521	-0.55608	-0.00026821	0.17393	8.389E-05	482.3207327192837	68.381	0.43966	68.15	67.958	68.398	-0.23048	-0.087091	-0.00048189	NaN	55.504	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165290			27646	7497	19044	19084							0.14487817961901328
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8632202148438	2	538.863152	1075.71175	-0.90429	-0.00048729	0.44642	0.00024056	-0.45787	-0.00024673	538.8633378369536	80.272	2.0385	80.272	79.911	81.95	0					149	49	5	0	0	0	0.2449	6	9992	9959;9968;9980;9992;10004;10017		115.46	40.353	1	8844400			27647	7497	19045	19085	31920;31921;31922;31923;31924;31925	31923					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8626708984375	2	538.863152	1075.71175	-1.4683	-0.00079121	0.99899	0.00053832	-0.46931	-0.00025289	538.86364145605	80.432	2.1604	80.281	79.924	82.085	-0.15168					146	52	5	0	0	0	0.2449	5	9981	9957;9969;9981;9994;10008		115.46	33.154	1	8480100			27648	7497	19045	19085	31926;31927;31928;31929;31930	31928					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.86328125	2	538.863152	1075.71175	-1.4003	-0.00075458	0.96241	0.00051861	-0.4379	-0.00023597	538.8636350089348	80.316	1.8749	80.338	79.98	81.855	0.021439					144	45	5	0	0	0	0.36026	6	9904	9883;9892;9904;9916;9928;9944		102.77	31.478	1	8657900			27649	7497	19045	19085	31931;31932;31933;31934;31935;31936	31933					0.17692349058802392
IPRASKLKSLN	11	Unmodified	_IPRASKLKSLN_					0	0	0			REV__ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	REV__ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	408.92236328125	3	409.590828	1225.75066	1.1732	0.00048052	-0.47887	-0.00019614	0.6943	0.00028438	409.59062326415903	103.35	0.47443	103.34	103.14	103.62	-0.0046005					16	10	2	0	0	0	0.024779	1	13195	13195		21.78	5.8598	1	144580	+		27650	26301	19046	19086	31937	31937					0.1468102962253397
IPRDPSQQEL	10	Unmodified	_IPRDPSQQEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	591.8089599609375	2	591.809302	1181.60405	-1.1646	-0.0006892	0.10175	6.0218E-05	-1.0628	-0.00062899	591.8096016512148	41.536	0.83357	41.536	41.153	41.987	0					63	23	4	0	0	0	0.20643	2	3737	3737;3748		120.27	44.103	1	2729100			27651	7968	19047	19087	31938;31939	31938					0.02051307666761204
IPRDPSQQEL	10	Unmodified	_IPRDPSQQEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	591.8093872070312	2	591.809302	1181.60405	-1.1274	-0.00066722	0.14928	8.8343E-05	-0.97815	-0.00057888	591.8096795795342	41.719	0.9314	41.586	41.251	42.183	-0.1322					65	26	4	0	0	0	0.031471	3	3749	3749;3760;3773		154.01	68.85	1	2597500			27652	7968	19047	19087	31940;31941;31942	31940					0.02051307666761204
IPRDPSQQEL	10	Unmodified	_IPRDPSQQEL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.80908203125	2	591.809302	1181.60405	0.25869	0.0001531	-1.4083	-0.00083343	-1.1496	-0.00068033	591.8087780447815	41.686	0.92808	41.709	41.358	42.286	0.023006					63	26	4	0	0	0	0.11975	3	3710	3710;3721;3733		131.12	45.955	1	2579500			27653	7968	19047	19087	31943;31944;31945	31943					0.02051307666761204
IPREKKEES	9	Unmodified	_IPREKKEES_					0	0	0			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.3355712890625	2	558.306395	1114.59824	0.89126	0.00049759	1.9238	0.001074	2.815	0.0015716	558.8093622470559	19.73	0.44618	19.53	19.255	19.701	-0.2001					12	8	2	0	0	0	0.024427	1	424	424		34.173	0	1	18290	+		27654	20171	19048	19088	31946	31946					0.04552209155099263
IPREPYRLRT	10	Unmodified	_IPREPYRLRT_					0	0	0			REV__FZD3|p.F231L|1|0.23|ENSG00000104290|chr8:28527453-28527453|C/A|missense_variant	REV__FZD3|p.F231L|1|0.23|ENSG00000104290|chr8:28527453-28527453|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2663269042969	3	434.254328	1299.74115	-0.13953	-6.0593E-05	0.45349	0.00019693	0.31395	0.00013633	434.2545379559403	24.727	0.50223	24.512	24.218	24.72	-0.2151					22	11	3	0	0	0	0.03519	1	1121	1121		31.634	1.0654	1	98575	+		27655	36054	19049	19089	31947	31947					0.10327261336965421
IPRGSERRM	9	Unmodified	_IPRGSERRM_					0	0	0			REV__nc|ENSG00000204256|P25440-4|BRD2	REV__nc|ENSG00000204256|P25440-4|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2998657226562	2	551.300924	1100.5873	-0.87603	-0.00048296	-1.3199	-0.00072767	-2.1959	-0.0012106	551.3001695358757	26.449	1.9312	26.426	25.091	27.022	-0.023088					128	46	5	0	0	0	0.50848	2	1324	1324;1346		58.782	7.4465	1	4290100	+		27656	28579	19050	19090	31948;31949	31948					0.041025282998361945
IPRPEVQAL	9	Unmodified	_IPRPEVQAL_					0	0	0		ENST00000393966.1_1_16:67314567-67316137:+|nuORF;ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000393966.1_1_16:67314567-67316137:+|nuORF	ENST00000393966.1_1_16:67314567-67316137:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.80316162109375	2	511.803291	1021.59203	-0.44606	-0.00022829	0.51638	0.00026429	0.070324	3.5992E-05	511.8034144131166	52.41	1.2457	52.41	51.803	53.049	0					70	32	3	0	0	0	0.247	3	5618	5607;5618;5630		82.75	13.123	1	2950700			27657	9827	19051	19091	31950;31951;31952	31951					0.08209735714228827
IPRPEVQAL	9	Unmodified	_IPRPEVQAL_					0	0	0		ENST00000393966.1_1_16:67314567-67316137:+|nuORF;ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000393966.1_1_16:67314567-67316137:+|nuORF	ENST00000393966.1_1_16:67314567-67316137:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.80291748046875	2	511.803291	1021.59203	0.22262	0.00011394	-0.20686	-0.00010587	0.015761	8.0665E-06	511.80302043970573	52.48	1.0271	52.332	51.846	52.873	-0.14723					68	26	4	0	0	0	0.247	2	5601	5601;5613		82.75	20.643	1	2433500			27658	9827	19051	19091	31953;31954	31953					0.08209735714228827
IPRPEVQAL	9	Unmodified	_IPRPEVQAL_					0	0	0		ENST00000393966.1_1_16:67314567-67316137:+|nuORF;ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000393966.1_1_16:67314567-67316137:+|nuORF	ENST00000393966.1_1_16:67314567-67316137:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.80322265625	2	511.803291	1021.59203	-0.45601	-0.00023339	0.14147	7.2405E-05	-0.31454	-0.00016098	511.8032008146732	52.333	1.193	52.425	51.857	53.05	0.091938					68	30	3	0	0	0	0.12914	3	5524	5516;5524;5536		104.06	24.344	1	2712000			27659	9827	19051	19091	31955;31956;31957	31956					0.08209735714228827
IPRPVDGVEV	10	Unmodified	_IPRPVDGVEV_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8052368164062	2	540.806031	1079.59751	-0.45475	-0.00024593	0.57089	0.00030874	0.11614	6.281E-05	540.805997030007	52.816	1.2888	52.669	51.95	53.239	-0.14723					72	33	4	0	0	0	0.6365	1	5660	5660		72.879	4.0331	1	5508100			27660	18059	19052	19092	31958	31958					0.060894145060501614
IPRQSMLL	8	Unmodified	_IPRQSMLL_					0	0	0		ENST00000358077.9_1_9:90301651-90312032:+|nuORF	ENST00000358077.9_1_9:90301651-90312032:+|nuORF	ENST00000358077.9_1_9:90301651-90312032:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2817687988281	2	479.281137	956.547722	0.71739	0.00034383	-0.76677	-0.0003675	-0.049379	-2.3667E-05	479.2806546948124	20.542	0.6908	20.346	20.088	20.779	-0.19577					27	13	3	0	0	0	0.59392	1	549	549		76.847	0.072494	1	434950			27661	12710	19053	19093	31959	31959					0.0677100829640267
IPRVKRGST	9	Unmodified	_IPRVKRGST_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.28045654296875	2	507.314358	1012.61416	-1.1525	-0.00058467	-4.2049	-0.0021332	-5.3574	-0.0027179	507.3119697786146	21.061	0.39396	21.061	20.753	21.146	0					11	7	2	0	0	0	0.024466	1	585	585		24.519	9.6543	1	10083			27662	1514	19054	19094	31960	31960					0.10835960182669169
IPRVLMAF	8	Unmodified	_IPRVLMAF_					0	0	0		ENST00000449426.1_1_7:56356827-56358135:+|nuORF	ENST00000449426.1_1_7:56356827-56358135:+|nuORF	ENST00000449426.1_1_7:56356827-56358135:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	473.7789611816406	2	473.780773	945.546994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.865	1	24.829	24.329	25.329	-0.036303								0	0	0	0.5067	1	1109	1109		54.765	4.7401	1				27663	14498	19055	19095	31961	31961					0.07204213647344204
IPRVRRAVL	9	Unmodified	_IPRVRRAVL_					0	0	0		ENST00000540645.5_1_9:116823569-116838999:-|nuORF;ENSG00000106927|ENST00000265132|AMBP	ENST00000540645.5_1_9:116823569-116838999:-|nuORF	ENST00000540645.5_1_9:116823569-116838999:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8184814453125	2	540.361642	1078.70873	-0.32675	-0.00017656	-2.3333	-0.0012608	-2.66	-0.0014374	540.3584497703279	74.472	0.17103	74.29	74.18	74.351	-0.18279					5	3	2	0	0	0	0.024541	1	8762	8762		18.324	1.8513	1	107430			27664	2819	19056	19096	31962	31962					0.17252518724649235
IPRYIISQL	9	Unmodified	_IPRYIISQL_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8342895507812	2	551.834591	1101.65463	-0.54571	-0.00030114	-0.20242	-0.0001117	-0.74813	-0.00041284	551.8343942682029	66.337	0.53954	66.055	65.711	66.251	-0.28149					45	13	4	0	0	0	0.2101	1	7867	7867		87.696	2.5356	1	3042800			27665	1396	19057	19097	31963	31963					0.10786881782428281
IPRYIISQL	9	Unmodified	_IPRYIISQL_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.8345336914062	2	551.834591	1101.65463	-0.39334	-0.00021706	-0.50554	-0.00027897	-0.89888	-0.00049603	551.8342208923393	66.036	0.55816	66.066	65.737	66.296	0.030106					41	14	4	0	0	0	0.2508	2	7761	7761;7791		82.241	2.5279	1	3539100			27666	1396	19057	19097	31964;31965	31964					0.10786881782428281
IPRYSLTE	8	Unmodified	_IPRYSLTE_					0	0	0			REV__ENST00000378572.7_1_10:13672282-13672417:+|nuORF	REV__ENST00000378572.7_1_10:13672282-13672417:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2507629394531	2	489.766374	977.518196	-0.69528	-0.00034052	-3.2869	-0.0016098	-3.9822	-0.0019503	489.7646237379981	32.944	0.37915	32.95	32.738	33.117	0.0066261					19	9	3	0	0	0	0.027866	1	2308	2308		18.324	0	1	342000	+		27667	31411	19058	19098	31966	31966					0.02853767551891906
IPSAATKFPP	10	Unmodified	_IPSAATKFPP_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7907104492188	2	514.792392	1027.57023	-0.048852	-2.5149E-05	-4.1186	-0.0021202	-4.1675	-0.0021454	514.7902006253424	41.455	1.2439	41.332	41.016	42.26	-0.12317					92	35	5	0	0	0	0.45367	1	3705	3705		93.195	0.052222	1	6259800			27668	2109	19059	19099	31967	31967					0.057549309656678815
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.91046142578125	3	417.910449	1250.70952	-0.35106	-0.00014671	0.54269	0.0002268	0.19163	8.0083E-05	417.9106151763218	21.483	0.95947	21.483	21.146	22.106	0					50	19	4	0	0	0	0.98082	2	667	667;681		41.08	1.0219	1	572940			27669	4481	19060	19100	31968;31969	31968					0.0941926858304214
IPSDPSIAR	9	Unmodified	_IPSDPSIAR_					0	0	0			REV__nc|ENSG00000182511|P07332-2|FES	REV__nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.24365234375	2	478.263999	954.513445	0.81369	0.00038916	-0.62553	-0.00029917	0.18816	8.9991E-05	478.2634631880635	40.43	1.4501	40.43	39.808	41.258	0					63	40	3	0	0	0	0.024447	1	3551	3551		32.812	17.171	1	1409400	+		27670	27483	19061	19101	31970	31970					0.03436883409131042
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.8058776855469	2	491.805834	981.597115	1.2856	0.00063228	-4.1701	-0.0020509	-2.8845	-0.0014186	491.80490064509485	59.822	1.1024	59.822	59.37	60.473	0					71	29	5	0	0	0	0.16638	2	6872	6839;6872		95.815	13.575	1	11972000			27671	4051	19062	19102	31971;31972	31972					0.10558039576847023
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.8055114746094	2	491.805834	981.597115	-0.24804	-0.00012199	-0.90634	-0.00044574	-1.1544	-0.00056773	491.80563387303164	60.048	0.96693	59.848	59.356	60.323	-0.20016					42	25	2	0	0	0	0.14024	4	6857	6835;6845;6857;6870		101.6	13.846	1	8153900			27672	4051	19062	19102	31973;31974;31975;31976	31975					0.10558039576847023
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.80572509765625	2	491.805834	981.597115	-0.5216	-0.00025653	-0.22301	-0.00010968	-0.74462	-0.00036621	491.80576701660823	59.678	1.117	59.763	59.426	60.543	0.085682					71	29	5	0	0	0	0.19099	4	6771	6736;6747;6759;6771		90.37	8.1293	1	6245200			27673	4051	19062	19102	31977;31978;31979;31980	31980					0.10558039576847023
IPSLSKPSIY	10	Unmodified	_IPSLSKPSIY_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.790771484375	2	552.818607	1103.62266	-0.16185	-8.9475E-05	0.069121	3.8211E-05	-0.092731	-5.1263E-05	552.8185243606432	98.758	0.78963	98.589	98.284	99.074	-0.16863					30	17	2	0	0	0	0.03519	1	12224	12224		32.812	8.2932	1	115050			27674	6485	19063	19103	31981	31981					0.07499469308618245
IPSLSKPSIY	10	Unmodified	_IPSLSKPSIY_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.818607	1103.62266	0.10198	5.6378E-05	-0.10713	-5.9225E-05	-0.0051499	-2.8469E-06	552.818385592143	98.712	0.82527	98.712	98.398	99.224	0	0.066074	9.2637E-05	NaN	32.812	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369530			27675	6485	19063	19103							0.07499469308618245
IPSLSKPSIY	10	Unmodified	_IPSLSKPSIY_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	552.818607	1103.62266	-0.11979	-6.6223E-05	0.13674	7.5591E-05	0.016946	9.368E-06	552.8186280280004	98.686	0.85805	98.697	98.232	99.09	0.010231	0.050299	0.00036227	NaN	32.812	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302190			27676	6485	19063	19103							0.07499469308618245
IPSLSKPSIY	10	Unmodified	_IPSLSKPSIY_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	552.818607	1103.62266	0.36653	0.00020262	-0.40565	-0.00022425	-0.039124	-2.1629E-05	552.8182658375508	98.768	0.82756	98.764	98.472	99.3	-0.0038834	0.11761	-0.00023742	NaN	32.812	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403530			27677	6485	19063	19103							0.07499469308618245
IPSLSKPSIY	10	Unmodified	_IPSLSKPSIY_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.818607	1103.62266	0.62013	0.00034282	-0.65989	-0.0003648	-0.039757	-2.1979E-05	552.8181426954878	98.705	0.77883	98.569	98.233	99.012	-0.13625	-0.077566	-0.00051851	NaN	32.812	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137820			27678	6485	19063	19103							0.07499469308618245
IPSPHPSSF	9	Unmodified	_IPSPHPSSF_					0	0	0		ENST00000486147.1_1_6:26087668-26093021:+|nuORF	ENST00000486147.1_1_6:26087668-26093021:+|nuORF	ENST00000486147.1_1_6:26087668-26093021:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.8798828125	2	484.745442	967.476331	-0.17335	-8.4033E-05	0.93041	0.00045101	0.75706	0.00036698	484.7453639110332	43.417	0.77436	43.305	43.034	43.809	-0.11253					45	20	3	0	0	0	0.024412	1	4027	4027		6.7355	2.7503	1	1671000			27679	15339	19064	19104	31982	31982					-0.008707881366262882
IPSPSDPVEP	10	Unmodified	_IPSPSDPVEP_					0	0	0			REV__ENSG00000125430|ENST00000360954|HS3ST3B1	REV__ENSG00000125430|ENST00000360954|HS3ST3B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.8108520507812	2	519.261122	1036.50769	1.0628	0.00055185	0.76956	0.0003996	1.8323	0.00095145	519.2615251764121	96.615	0.78186	96.491	96.147	96.929	-0.12305					27	17	2	0	0	0	0.03519	1	11957	11957		26.693	0	1	82675			27680	22815	19065	19105	31983	31983					-0.00910259893203147
IPSQLVSSV	9	Unmodified	_IPSQLVSSV_					0	0	0		ENST00000394287.7_1_17:37607336-37607411:-|nuORF	ENST00000394287.7_1_17:37607336-37607411:-|nuORF	ENST00000394287.7_1_17:37607336-37607411:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.26861572265625	2	465.26875	928.522947	-0.47284	-0.00022	-0.42554	-0.00019799	-0.89839	-0.00041799	465.26828459591565	38.566	0.97694	38.483	37.883	38.86	-0.082516					69	26	5	0	0	0	0.18915	1	3251	3251		90.777	3.0224	1	5655800			27681	13484	19066	19106	31984	31984					0.05582651694669494
IPSQMQSL	8	Unmodified	_IPSQMQSL_					0	0	0			REV__ENST00000566637.5_1_16:88780822-88781656:+|nuORF	REV__ENST00000566637.5_1_16:88780822-88781656:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.24847412109375	2	452.233853	902.453153	-0.5338	-0.0002414	4.0027	0.0018102	3.4689	0.0015688	452.23625458874415	33.229	0.3077	33.235	33.08	33.388	0.0066261					17	8	3	0	0	0	0.027866	1	2339	2339		82.241	10.363	1	2090600	+		27682	26840	19067	19107	31985	31985					-0.0019755024560481615
IPSRGPLDK	9	Unmodified	_IPSRGPLDK_					0	0	0		ENSG00000147403|ENST00000369817|RPL10;ENST00000431607.1_1_9:119942983-119943337:-|nuORF	ENSG00000147403|ENST00000369817|RPL10	ENSG00000147403|ENST00000369817|RPL10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.77728271484375	2	491.787641	981.56073	-0.073647	-3.6219E-05	-1.2844	-0.00063164	-1.358	-0.00066786	491.78693987011997	36.563	0.46059	36.563	36.263	36.724	0					24	12	4	0	0	0	0.024292	1	2927	2927		40.778	0	1	131420			27683	5960	19068	19108	31986	31986					0.06921162680134785
IPSRLPLLL	9	Unmodified	_IPSRLPLLL_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2637023925781	2	511.342052	1020.66955	-0.30534	-0.00015613	-0.45903	-0.00023472	-0.76437	-0.00039085	511.34160532471276	81.037	0.5764	80.895	80.616	81.192	-0.14248					27	13	3	0	0	0	0.024541	1	9720	9720		24.203	1.1603	1	141370			27684	2444	19069	19109	31987	31987					0.1600437365042353
IPSSIEDIF	9	Unmodified	_IPSSIEDIF_					0	0	0		nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1	nc|ENSG00000159593|Q13564-3|NAE1	nc|ENSG00000159593|Q13564-3|NAE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7646179199219	2	510.76604	1019.51753	-0.73318	-0.00037449	-2.7118	-0.0013851	-3.4449	-0.0017596	510.76470702365367	25.738	1.2452	25.703	25.313	26.558	-0.034395					75	29	5	0	0	0	0.75282	1	1261	1261		42.474	3.2216	1	7734100			27685	6755	19070	19110	31988	31988					0.00854928112187281
IPSSKRTD	8	Unmodified	_IPSSKRTD_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2489013671875	2	452.248349	902.482145	-0.19035	-8.6084E-05	-1.4678	-0.00066383	-1.6582	-0.00074992	452.24784923559713	33.402	1.5722	33.402	33.018	34.59	0					127	41	5	0	0	0	0.53523	1	2475	2475		82.305	0	1	96955000			27686	3667	19071	19111	31989	31989					0.027003103750416813
IPSSKRTD	8	Unmodified	_IPSSKRTD_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2479553222656	2	452.248349	902.482145	-0.50016	-0.0002262	-1.1867	-0.0005367	-1.6869	-0.0007629	452.24797314140966	33.232	1.5758	33.239	32.888	34.463	0.0066223					137	41	6	0	0	0	0.50239	1	2408	2408		85.359	5.6469	1	95624000			27687	3667	19071	19111	31990	31990					0.027003103750416813
IPSSKRTD	8	Unmodified	_IPSSKRTD_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2484436035156	2	452.248349	902.482145	0.62819	0.0002841	-2.2392	-0.0010127	-1.611	-0.00072859	452.24750550484015	33.123	1.8028	33.18	32.721	34.524	0.056572					145	46	5	0	0	0	0.6248	1	2357	2357		73.975	2.0973	1	88437000			27688	3667	19071	19111	31991	31991					0.027003103750416813
IPSSRSEK	8	Unmodified	_IPSSRSEK_					0	0	0		ENST00000562077.5_1_16:70375918-70375996:-|nuORF	ENST00000562077.5_1_16:70375918-70375996:-|nuORF	ENST00000562077.5_1_16:70375918-70375996:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2477111816406	2	452.248349	902.482145	0.62819	0.0002841	-2.2392	-0.0010127	-1.611	-0.00072859	452.24750550484015	33.123	1.8028	33.18	32.721	34.524	0.056572					145	46	5	0	0	0	0.53523	1	2308	2308		82.305	0.064519	1	88437000			27689	16839	19072	19112	31992	31992					0.0270031037505305
IPSVKREA	8	Unmodified	_IPSVKREA_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.26947021484375	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.91956	1	3226	3226		49.442	5.3247	1	141320000	+		27690	26852	19073	19113	31993	31993					0.07029491134369437
IPTEGEVAYT	10	Unmodified	_IPTEGEVAYT_					0	0	0			REV__nc|ENSG00000121577|Q9HBU9|POPDC2	REV__nc|ENSG00000121577|Q9HBU9|POPDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.7379150390625	2	540.266404	1078.51826	-1.1124	-0.00060098	2.0051	0.0010833	0.8927	0.0004823	540.2672712451927	37.149	0.62427	36.93	36.528	37.152	-0.2195					21	15	2	0	0	0	0.03519	1	2932	2932		27.882	0	1	227870	+		27691	36616	19074	19114	31994	31994					-0.017862772387616133
IPTGANKGFS	10	Unmodified	_IPTGANKGFS_					0	0	0		ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2655334472656	2	496.263999	990.513445	-0.2568	-0.00012744	2.8649	0.0014218	2.6081	0.0012943	496.26542763132267	37.219	3.0763	37.156	35.942	39.018	-0.063389					158	84	2	0	0	0	0.45367	1	2980	2980		93.195	13.483	1	8069400			27692	17563	19075	19115	31995	31995					0.017808834091511017
IPTHVRAQ	8	Unmodified	_IPTHVRAQ_					0	0	0		ENSG00000243709|ENST00000272134|LEFTY1	ENSG00000243709|ENST00000272134|LEFTY1	ENSG00000243709|ENST00000272134|LEFTY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7590026855469	2	461.266876	920.519199	-0.29353	-0.0001354	0.5739	0.00026472	0.28037	0.00012933	461.2668430169009	30.365	0.49574	30.44	30.212	30.708	0.074314					16	11	2	0	0	0	0.027866	1	1902	1902		13.775	0	1	172990			27693	10811	19076	19116	31996	31996					0.0557602671146924
IPTKKPHKAID	11	Unmodified	_IPTKKPHKAID_					0	0	0			REV__ENST00000534296.5_1_11:35226115-35226250:+|nuORF	REV__ENST00000534296.5_1_11:35226115-35226250:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.3775024414062	2	624.377155	1246.73976	0.2017	0.00012593	4.4909	0.002804	4.6926	0.0029299	624.3798069627062	105.29	0.38515	105.29	105.06	105.45	0					23	9	3	0	0	0	1.0022	2	13525	13512;13525		36.318	7.1681	1	694610	+		27694	34498	19077	19117	31997;31998	31998					0.12625627248212368
IPTKKPHKAID	11	Unmodified	_IPTKKPHKAID_					0	0	0			REV__ENST00000534296.5_1_11:35226115-35226250:+|nuORF	REV__ENST00000534296.5_1_11:35226115-35226250:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	624.3761596679688	2	624.377155	1246.73976	0.0948	5.9191E-05	4.2422	0.0026487	4.337	0.0027079	624.3797573076713	100.78	0.46889	100.61	100.37	100.84	-0.17178					22	13	2	0	0	0	1.0805	1	12504	12504		16.717	1.0756	1	329940	+		27695	34498	19077	19117	31999	31999					0.12625627248212368
IPTLLLPP	8	Unmodified	_IPTLLLPP_					0	0	0		nc|ENSG00000054690|Q9ULM0-2|PLEKHH1;ENST00000558981.5_1_14:68038444-68042282:+|nuORF	nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.2824401855469	2	432.283672	862.552791	0.085853	3.7113E-05	-2.996	-0.0012951	-2.9101	-0.001258	432.2822362113221	51.961	1.3052	51.961	51.633	52.938	0					71	34	3	0	0	0	1.0574	1	5554	5554		20.482	3.7769	1	3406900			27696	16765	19078	19118	32000	32000					0.11601635430656643
IPTLLLPP	8	Unmodified	_IPTLLLPP_					0	0	0		nc|ENSG00000054690|Q9ULM0-2|PLEKHH1;ENST00000558981.5_1_14:68038444-68042282:+|nuORF	nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.2828063964844	2	432.283672	862.552791	-0.53015	-0.00022918	-2.386	-0.0010314	-2.9162	-0.0012606	432.28247650282805	51.871	1.2107	51.963	51.615	52.826	0.091938					69	31	4	0	0	0	1.0574	1	5467	5467		26.796	2.2921	1	2537500			27697	16765	19078	19118	32001	32001					0.11601635430656643
IPTSARSML	9	Oxidation (M)	_IPTSARSM(Oxidation (M))L_		IPTSARSM(1)L		IPTSARSM(96)L	0	0	1		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2658996582031	2	496.265684	990.516816	0.43634	0.00021654	-1.0865	-0.0005392	-0.65019	-0.00032266	496.2650620795505	37.339	2.9423	37.339	35.96	38.902	0					208	81	5	0	0	0	0.16638	2	3035	3013;3035		95.815	9.9612	1	9375100			27698	5671	19079	19119	32002;32003	32003		241			0.021178101915097614
IPTSARSML	9	Oxidation (M)	_IPTSARSM(Oxidation (M))L_		IPTSARSM(1)L		IPTSARSM(90)L	0	0	1		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2657165527344	2	496.265684	990.516816	-0.2568	-0.00012744	-0.53128	-0.00026365	-0.78808	-0.0003911	496.26542763132267	37.219	3.0763	37.156	35.942	39.018	-0.063389					158	84	2	0	0	0	0.19099	2	2991	2991;3016		90.37	19.074	1	8069400			27699	5671	19079	19119	32004;32005	32004		241			0.021178101915097614
IPTSARSML	9	Oxidation (M)	_IPTSARSM(Oxidation (M))L_		IPTSARSM(1)L		IPTSARSM(85)L	0	0	1		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2655334472656	2	496.265684	990.516816	-0.24536	-0.00012176	-0.58759	-0.0002916	-0.83295	-0.00041336	496.26541624758113	37.364	3.0166	37.396	36.127	39.143	0.032269					163	82	2	0	0	0	0.22902	2	2959	2946;2959		85.161	10.906	1	8318800			27700	5671	19079	19119	32006;32007	32007		241			0.021178101915097614
IPTSARSML	9	Unmodified	_IPTSARSML_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.26690673828125	2	488.268227	974.521901	-0.31769	-0.00015512	0.29953	0.00014625	-0.018161	-8.8673E-06	488.2682374376264	47.473	0.85987	47.473	47.111	47.971	0					67	25	4	0	0	0	0.32064	1	4763	4763		72.879	11.907	1	4788000			27701	5671	19079	19120	32008	32008					0.03362114054118592
IPTSARSML	9	Unmodified	_IPTSARSML_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2683410644531	2	488.268227	974.521901	-0.050884	-2.4845E-05	-0.062405	-3.047E-05	-0.11329	-5.5315E-05	488.2680678099164	47.645	0.69744	47.492	47.161	47.858	-0.15301					63	20	4	0	0	0	0.16638	1	4774	4774		95.815	2.6197	1	4481600			27702	5671	19079	19120	32009	32009					0.03362114054118592
IPTSARSML	9	Unmodified	_IPTSARSML_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.268227	974.521901	-1.2317	-0.00060139	1.1157	0.00054476	-0.11597	-5.6626E-05	488.2686452320963	47.403	0.90543	47.463	46.957	47.862	0.059097	-0.013328	0.000753	NaN	95.815	71	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4972300			27703	5671	19079	19120							0.03362114054118592
IPTTTLIIT	9	Unmodified	_IPTTTLIIT_					0	0	0		FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant;FSTL5|p.N690Ifs*4|1|0.24|ENSG00000168843|chr4:161386222-161386222|T/-|frameshift_variant;nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5	FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant	FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.80303955078125	2	486.802426	971.590298	0.26923	0.00013106	-0.13675	-6.6572E-05	0.13248	6.449E-05	486.8020436813213	88.537	0.89175	88.537	88.086	88.978	0					52	20	4	0	0	0	0.70186	1	11172	11172		45.952	3.5558	1	565990			27704	7873	19080	19121	32010	32010					0.10336681905619116
IPVALRVLLAG	11	Unmodified	_IPVALRVLLAG_					0	0	0		nc|ENSG00000256073|Q96HZ7|URB1-AS1;ENST00000534991.3_1_21:33765531-33765714:+|nuORF	nc|ENSG00000256073|Q96HZ7|URB1-AS1	nc|ENSG00000256073|Q96HZ7|URB1-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2796020507812	2	561.373884	1120.73321	0.53015	0.00029761	-0.24667	-0.00013847	0.28349	0.00015914	561.3739630064807	84.968	0.16531	84.968	84.834	84.999	0					6	3	2	0	0	0	0.024724	1	10640	10640		35.618	16.515	1	36774			27705	16342	19081	19122	32011	32011					0.1776773408751069
IPVAQKRKTPN	11	Unmodified	_IPVAQKRKTPN_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.92236328125	3	417.922578	1250.7459	0.42376	0.0001771	-1.1569	-0.00048348	-0.7331	-0.00030638	417.92203568971775	104.35	0.97945	104.35	103.94	104.92	0					69	25	4	0	0	0	1.0327	1	13376	13376		29.551	8.7136	1	2568700			27706	7107	19082	19123	32012	32012					0.13056145479754377
IPVAQKRKTPN	11	Unmodified	_IPVAQKRKTPN_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.9224548339844	3	417.922578	1250.7459	0.21081	8.8103E-05	-1.0544	-0.00044065	-0.84357	-0.00035255	417.9221205737804	104.31	0.87881	104.32	103.91	104.79	0.0031357					68	23	4	0	0	0	1.0788	1	13351	13351		17.167	0	1	2248100			27707	7107	19082	19123	32013	32013					0.13056145479754377
IPVDKSVKGK	10	Unmodified	_IPVDKSVKGK_					0	0	0		ENST00000506459.1_1_4:33012907-33013108:-|nuORF	ENST00000506459.1_1_4:33012907-33013108:-|nuORF	ENST00000506459.1_1_4:33012907-33013108:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8157348632812	2	535.832049	1069.64954	-0.13718	-7.3506E-05	-0.122	-6.5373E-05	-0.25918	-0.00013888	535.8317301099105	72.093	0.48704	71.818	71.626	72.113	-0.27509					25	11	3	0	0	0	0.03519	1	8408	8408		9.7057	0	1	275350			27708	15741	19083	19124	32014	32014					0.11750577919792704
IPVDNKSLQ	9	Unmodified	_IPVDNKSLQ_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7148132324219	2	507.284931	1012.55531	-0.45245	-0.00022952	1.9765	0.0010027	1.5241	0.00077314	507.28501270835915	33.829	0.42309	33.629	33.479	33.902	-0.20019					15	10	2	0	0	0	0.024523	1	2445	2445		21.96	4.4919	1	219970	+		27709	20124	19084	19125	32015	32015					0.04953439097675982
IPVEWYLKG	9	Unmodified	_IPVEWYLKG_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8239135742188	2	552.808042	1103.60153	-0.76078	-0.00042056	-3.2914	-0.0018195	-4.0522	-0.0022401	552.806202521113	75.941	0.47173	75.696	75.477	75.949	-0.24455					25	12	3	0	0	0	0.024466	1	9275	9275		18.324	0	1	213930			27710	6479	19085	19126	32016	32016					0.05387503999713772
IPVFAAPNL	9	Unmodified	_IPVFAAPNL_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5;REV__ENST00000554972.1_1_14:76349147-76373016:+|nuORF	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.795166015625	2	471.276378	940.538203	-0.13071	-6.1602E-05	-4.318	-0.002035	-4.4487	-0.0020966	471.27418127974573	43.096	0.41995	42.859	42.679	43.099	-0.23736					15	10	2	0	0	0	0.024386	1	3898	3898		52.299	8.1824	1	286710	+		27711	22475;34999	19086	19127	32017	32017					0.06555563282495314
IPVFHQPDN	9	Unmodified	_IPVFHQPDN_					0	0	0		ENST00000472964.1_1_16:88016343-88017709:+|nuORF	ENST00000472964.1_1_16:88016343-88017709:+|nuORF	ENST00000472964.1_1_16:88016343-88017709:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2817993164062	2	533.769448	1065.52434	-1.4129	-0.00075416	3.4247	0.001828	2.0118	0.0010739	533.7711581846905	39.038	1.1625	39.062	38.328	39.49	0.023727					50	21	3	0	0	0	0.024477	1	3260	3260		27.882	17.617	1	505500			27712	14998	19087	19128	32018	32018					-0.005797142165647529
IPVGKSPMVE	10	Unmodified	_IPVGKSPMVE_					0	0	0		nc|ENSG00000149657|Q9BX40-3|LSM14B;ENSG00000149657|ENST00000279068|LSM14B	nc|ENSG00000149657|Q9BX40-3|LSM14B	nc|ENSG00000149657|Q9BX40-3|LSM14B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.7907104492188	2	528.791535	1055.56852	-0.28265	-0.00014947	-1.6895	-0.00089342	-1.9722	-0.0010429	528.790594430676	104.63	0.73366	104.63	104.36	105.09	0.00103					47	22	3	0	0	0	0.85955	1	13385	13385		56.721	6.6965	1	383360			27713	6114	19088	19129	32019	32019					0.04295553885413028
IPVHLESEV	9	Unmodified	_IPVHLESEV_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7328491210938	2	511.779482	1021.54441	0.44351	0.00022698	-1.7317	-0.00088624	-1.2882	-0.00065927	511.7784936363577	59.532	0.83923	59.355	58.715	59.554	-0.1761					30	20	3	0	0	0	0.024262	1	6558	6558		47.916	0.25827	1	678620			27714	10406	19089	19130	32020	32020					0.034500367233818
IPVHLESEV	9	Unmodified	_IPVHLESEV_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.779482	1021.54441	0.50192	0.00025687	-3.8196	-0.0019548	-3.3176	-0.0016979	511.77705149692923	59.662	0.25962	59.462	59.356	59.616	-0.20016	0.015717	-0.0014681	NaN	47.916	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519020			27715	10406	19089	19130							0.034500367233818
IPVHLESEV	9	Unmodified	_IPVHLESEV_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.779482	1021.54441	1.0927	0.00055924	-2.2002	-0.001126	-1.1075	-0.00056678	511.7781523133751	59.68	0.39199	59.483	59.297	59.689	-0.19742	0.036338	0.00018945	NaN	47.916	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818220			27716	10406	19089	19130							0.034500367233818
IPVHLESEV	9	Unmodified	_IPVHLESEV_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.779482	1021.54441	0.061138	3.1289E-05	-1.6516	-0.00084527	-1.5905	-0.00081398	511.7785299290067	59.727	0.39592	59.479	59.252	59.648	-0.24841	0.032288	0.00075095	NaN	47.916	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	741400			27717	10406	19089	19130							0.034500367233818
IPVHLITSGV	10	Unmodified	_IPVHLITSGV_					0	0	0		ENST00000588475.1_1_18:13666687-13682076:-|nuORF;ENSG00000177150|ENST00000651643|FAM210A	ENST00000588475.1_1_18:13666687-13682076:-|nuORF	ENST00000588475.1_1_18:13666687-13682076:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2702026367188	2	518.313492	1034.61243	-0.29215	-0.00015142	1.3241	0.00068631	1.032	0.00053489	518.3120370189183	25.642	0.34056	25.47	25.282	25.623	-0.17151					17	7	3	0	0	0	0.03519	1	1195	1195		38.806	0	1	54506			27718	8713	19090	19131	32021	32021					0.09650906374031365
IPVPLLQVI	9	Unmodified	_IPVPLLQVI_					0	0	0			REV__ENSG00000106771|ENST00000374586|TMEM245	REV__ENSG00000106771|ENST00000374586|TMEM245	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.3002624511719	2	496.331153	990.647754	-0.92293	-0.00045808	-3.1777	-0.0015772	-4.1006	-0.0020352	496.32968816258364	33.237	0.15808	33.071	32.998	33.156	-0.16565					6	3	2	0	0	0	0.024517	1	2331	2331		26.796	1.3459	1	89592	+		27719	21641	19091	19132	32022	32022					0.15205568901831157
IPVPVYIP	8	Unmodified	_IPVPVYIP_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.2632141113281	2	449.275847	896.537141	0.0789	3.5448E-05	3.1698	0.0014241	3.2487	0.0014596	449.27716487993735	63.969	0.15161	63.71	63.601	63.752	-0.25824					5	3	2	0	0	0	0.027866	1	7230	7230		1.619	0	1	25478			27720	3883	19092	19133	32023	32023					0.08473348913594236
IPVPWSDP	8	Unmodified	_IPVPWSDP_					0	0	0			REV__ENST00000498157.1_1_1:109813918-109815451:+|nuORF	REV__ENST00000498157.1_1_1:109813918-109815451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2584533691406	2	455.737086	909.459619	-0.18308	-8.3436E-05	-3.2094	-0.0014626	-3.3925	-0.0015461	455.7351004645129	32.997	0.63496	32.997	32.753	33.388	0					33	16	3	0	0	0	0.027866	1	2371	2371		25.45	0	1	448950	+		27721	33874	19093	19134	32024	32024					0.0012671097742895654
IPVPWSDP	8	Unmodified	_IPVPWSDP_					0	0	0			REV__ENST00000498157.1_1_1:109813918-109815451:+|nuORF	REV__ENST00000498157.1_1_1:109813918-109815451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2583923339844	2	455.737086	909.459619	-0.47937	-0.00021847	-3.1629	-0.0014415	-3.6423	-0.0016599	455.7352087748228	32.86	0.59779	32.867	32.625	33.223	0.0066261					26	15	2	0	0	0	0.027866	1	2275	2275		50.025	5.4935	1	442010	+		27722	33874	19093	19134	32025	32025					0.0012671097742895654
IPVPYLYF	8	Unmodified	_IPVPYLYF_					0	0	0		ENSG00000091947|ENST00000206380|TMEM101	ENSG00000091947|ENST00000206380|TMEM101	ENSG00000091947|ENST00000206380|TMEM101	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3234558105469	2	506.281129	1010.54771	-0.42783	-0.0002166	2.5748	0.0013036	2.1469	0.001087	506.28219646132845	39.081	0.45546	39.081	38.902	39.357	0					21	12	2	0	0	0	0.027866	1	3328	3328		33.493	13.011	1	319670			27723	1972	19094	19135	32026	32026					0.04285331568030415
IPVRLATI	8	Unmodified	_IPVRLATI_					0	0	0			REV__ENSG00000175470|ENST00000455566|PPP2R2D	REV__ENSG00000175470|ENST00000455566|PPP2R2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2661437988281	2	441.792195	881.569838	-0.17197	-7.5977E-05	0.062494	2.7609E-05	-0.10948	-4.8367E-05	441.7922314089557	60.216	0.56469	60.016	59.795	60.36	-0.20016					21	14	3	0	0	0	0.027866	1	6925	6925		33.516	20.556	1	142170	+		27724	26952	19095	19136	32027	32027					0.12431556036472102
IPVTEKNK	8	Unmodified	_IPVTEKNK_					0	0	0		ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.7762756347656	2	464.776742	927.538931	-0.50943	-0.00023677	0.51313	0.00023849	0.0036971	1.7183E-06	464.77682253310604	79.932	0.67235	79.932	79.658	80.331	0					26	15	2	0	0	0	0.97924	1	9923	9923		40.573	1.7665	1	666000			27725	5241	19096	19137	32028	32028					0.07226357931563143
IPVVMAGII	9	Unmodified	_IPVVMAGII_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2589111328125	2	456.782982	911.55141	-0.32118	-0.00014671	4.1011	0.0018733	3.7799	0.0017266	456.78483759780204	28.065	0.92877	28.065	27.726	28.655	0					59	22	4	0	0	0	0.024289	1	1641	1641		29.842	5.3375	1	951710			27726	9486	19097	19138	32029	32029					0.09209678070249083
IPWAALGK	8	Unmodified	_IPWAALGK_					0	0	0		ENST00000372829.7_1_X:100807872-100808079:+|nuORF	ENST00000372829.7_1_X:100807872-100808079:+|nuORF	ENST00000372829.7_1_X:100807872-100808079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.74853515625	2	428.257988	854.501424	-0.93471	-0.0004003	1.6301	0.00069812	0.69542	0.00029782	428.2563803372057	25.448	0.12274	25.448	25.363	25.486	0					4	2	2	0	0	0	0.027866	1	1209	1209		4.3163	0	1	10984			27727	13058	19098	19139	32030	32030					0.06835311456597992
IPWAVLLL	8	Unmodified	_IPWAVLLL_					0	0	0		ENST00000585357.1_1_19:38780610-38781349:+|nuORF	ENST00000585357.1_1_19:38780610-38781349:+|nuORF	ENST00000585357.1_1_19:38780610-38781349:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.77197265625	2	462.799489	923.584425	0.030379	1.4059E-05	4.2141	0.0019503	4.2445	0.0019643	462.80144040325314	23.177	0.3664	23.253	23.026	23.392	0.076241					13	8	2	0	0	0	0.027866	1	815	815		43.626	13.785	1	76648			27728	17225	19099	19140	32031	32031					0.11957628184609348
IPWKEVVF	8	Unmodified	_IPWKEVVF_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3061828613281	2	509.292028	1016.5695	-1.5085	-0.00076824	-2.6317	-0.0013403	-4.1402	-0.0021086	509.2913470620993	91.993	0.26131	91.844	91.612	91.873	-0.1487					7	5	2	0	0	0	0.027866	1	11265	11265		35.201	0	1	30130	+		27729	20826	19100	19141	32032	32032					0.06188136316620785
IPWLLSPE	8	Unmodified	_IPWLLSPE_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.2745056152344	2	477.768386	953.522219	0.21118	0.00010089	-4.4571	-0.0021294	-4.2459	-0.0020286	477.76610634368717	48.314	0.79371	48.314	48.105	48.899	0					36	22	2	0	0	0	0.027866	1	4883	4883		26.796	0	1	2292500			27730	10139	19101	19142	32033	32033					0.043598570456197194
IPWLTLSKP	9	Unmodified	_IPWLTLSKP_					0	0	0		ENSG00000178222|ENST00000433731|RNF212	ENSG00000178222|ENST00000433731|RNF212	ENSG00000178222|ENST00000433731|RNF212	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7640991210938	2	527.81841	1053.62227	-1.0471	-0.00055268	-3.914	-0.0020659	-4.9611	-0.0026186	527.816262155997	62.422	0.50046	62.244	61.883	62.383	-0.17781					25	12	3	0	0	0	0.024447	1	6988	6988		32.812	0	1	542480			27731	8802	19102	19143	32034	32034					0.09760094379407747
IPWRKGTVS	9	Unmodified	_IPWRKGTVS_					0	0	0			REV__nc|ENSG00000115159|P43304-2|GPD2	REV__nc|ENSG00000115159|P43304-2|GPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2899780273438	2	522.303458	1042.59236	2.6465	0.0013823	0.84562	0.00044167	3.4921	0.0018239	522.3037010668445	19.363	0.44427	19.429	19.093	19.538	0.066193					15	8	2	0	0	0	0.024535	1	342	342		18.324	7.4589	1	34521	+		27732	22170	19103	19144	32035	32035					0.07277155434076121
IPYCASGDAL	10	Unmodified	_IPYCASGDAL_					0	0	0			REV__HAPLN4|p.R329C|1|0.5|ENSG00000187664|chr19:19258041-19258041|G/A|missense_variant	REV__HAPLN4|p.R329C|1|0.5|ENSG00000187664|chr19:19258041-19258041|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.23870849609375	2	505.236593	1008.45863	1.5607	0.0007885	1.6875	0.0008526	3.2482	0.0016411	505.23729099670436	63.473	1.0351	63.527	63.162	64.197	0.054104					59	28	3	0	0	0	0.65054	1	7364	7364		71.296	7.9894	1	4169000	+		27733	36089	19104	19145	32036	32036					-0.04525871453790842
IPYGALVTK	9	Unmodified	_IPYGALVTK_					0	0	0			REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.77978515625	2	481.289485	960.564418	0.059235	2.8509E-05	-0.46435	-0.00022349	-0.40512	-0.00019498	481.2888217981043	60.955	0.70777	60.955	60.509	61.216	0					29	18	3	0	0	0	0.024397	1	7025	7025		47.657	29.333	1	1101800	+		27734	28733	19105	19146	32037	32037					0.0825583245400594
IPYGALVTK	9	Unmodified	_IPYGALVTK_					0	0	0			REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7795104980469	2	481.289485	960.564418	-0.82049	-0.0003949	1.2572	0.00060508	0.43672	0.00021019	481.28984243533057	60.894	0.6728	60.965	60.603	61.276	0.071125					29	17	2	0	0	0	0.024261	1	6922	6922		64.207	20.09	1	1049200	+		27735	28733	19105	19146	32038	32038					0.0825583245400594
IPYGERITL	9	Unmodified	_IPYGERITL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MSMS	OPSCC_39_ClassI_Rep-3	3	531.3052368164062	2	531.303124	1060.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.952	1	59.037	58.537	59.537	0.085682								0	0	0	0.048917	1	6630	6630		109.48	18.877	1				27736	3747	19106	19147	32039	32039					0.06382315994369492
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	620.832275390625	2	620.832246	1239.64994	-0.7539	-0.00046804	0.49663	0.00030832	-0.25726	-0.00015972	620.8325633434613	61.738	0.70256	61.738	61.414	62.117	0					63	18	4	0	0	0	0.048406	4	7139	7139;7148;7159;7186		122.18	26.361	1	13020000			27737	3431	19107	19148	32040;32041;32042;32043	32040					0.039699528490018565
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	620.8323974609375	2	620.832246	1239.64994	0.16825	0.00010446	-0.43585	-0.00027059	-0.26759	-0.00016613	620.8319557502699	61.973	0.70395	61.746	61.415	62.119	-0.22663					66	18	4	0	0	0	0.017859	5	7175	7142;7150;7162;7175;7189		131.03	37.836	1	12674000			27738	3431	19107	19148	32044;32045;32046;32047;32048	32047					0.039699528490018565
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	620.8326416015625	2	620.832246	1239.64994	-0.97581	-0.00060581	0.79339	0.00049256	-0.18242	-0.00011325	620.8327239821605	61.657	0.66208	61.728	61.434	62.096	0.071125					60	17	4	0	0	0	0.078638	2	7060	7060;7073		113.41	20.216	1	13074000			27739	3431	19107	19148	32049;32050	32049					0.039699528490018565
IPYPETDNWY	10	Unmodified	_IPYPETDNWY_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2552490234375	3	433.196033	1296.56627	0.53095	0.00023001	-2.4141	-0.0010458	-1.8832	-0.00081579	433.19432622068774	102.82	0.12743	102.69	102.58	102.71	-0.12931					4	2	2	0	0	0	0.03519	1	12765	12765		41.427	29.494	1	57802			27740	4371	19108	19149	32051	32051					-0.07015203318724161
IPYPRPGTL	9	Unmodified	_IPYPRPGTL_					0	0	0		ENST00000475955.1_1_7:80425937-80427530:-|nuORF	ENST00000475955.1_1_7:80425937-80427530:-|nuORF	ENST00000475955.1_1_7:80425937-80427530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8134460449219	2	507.292559	1012.57057	-0.12664	-6.4244E-05	0.74213	0.00037648	0.61548	0.00031223	507.2907784003032	93.057	0.56165	92.913	92.659	93.22	-0.14411					14	12	2	0	0	0	0.024487	1	11416	11416		24.203	0	1	31892			27741	15076	19109	19150	32052	32052					0.06478350685517853
IPYRFGQL	8	Unmodified	_IPYRFGQL_					0	0	0			REV__SETBP1|p.S1039R|1|0.2|ENSG00000152217|chr18:44952457-44952457|C/G|missense_variant	REV__SETBP1|p.S1039R|1|0.2|ENSG00000152217|chr18:44952457-44952457|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2740478515625	2	497.279452	992.544351	-0.49408	-0.0002457	-4.1986	-0.0020879	-4.6927	-0.0023336	497.2772643278101	40.072	0.59743	39.96	39.715	40.312	-0.11222					42	15	4	0	0	0	0.52467	1	3490	3490		83.287	6.4406	1	2939800	+		27742	37478	19110	19151	32053	32053					0.047780815140413324
IPYTLNGKKVE	11	Unmodified	_IPYTLNGKKVE_					0	0	0		nc|ENSG00000081760|Q86V21-3|AACS;ENSG00000081760|ENST00000316519|AACS	nc|ENSG00000081760|Q86V21-3|AACS	nc|ENSG00000081760|Q86V21-3|AACS	MSMS	OPSCC_39_ClassI_Rep-2	2	631.3623046875	2	631.36117	1260.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.884	1	66.603	66.103	67.103	-0.28148								0	0	0	0.90099	1	7935	7935		52.937	1.4089	1				27743	1713	19111	19152	32054	32054					0.08786214774409018
IPYWIVKN	8	Unmodified	_IPYWIVKN_					0	0	0		ENST00000527715.5_1_15:79214474-79217794:-|nuORF;ENST00000533777.5_1_15:79214474-79223953:-|nuORF;ENST00000534237.5_1_15:79214474-79224366:-|nuORF;ENSG00000103811|ENST00000220166|CTSH	ENST00000527715.5_1_15:79214474-79217794:-|nuORF	ENST00000527715.5_1_15:79214474-79217794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8139038085938	2	516.797478	1031.5804	-1.5205	-0.00078578	-2.2717	-0.001174	-3.7921	-0.0019598	516.7960982456469	59.911	0.93174	59.989	59.533	60.465	0.078884					52	24	4	0	0	0	0.027866	1	6838	6838		12.959	0	1	549080			27744	2529	19112	19153	32055	32055					0.06587538690905603
IQAAPDFPV	9	Unmodified	_IQAAPDFPV_					0	0	0			REV__ENSG00000160862|ENST00000292401|AZGP1	REV__ENSG00000160862|ENST00000292401|AZGP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2590026855469	2	479.255643	956.496732	-0.89969	-0.00043118	4.4902	0.0021519	3.5905	0.0017208	479.2576548980578	55.482	0.63708	55.58	55.294	55.931	0.098015					39	16	3	0	0	0	0.39228	1	6062	6062		66.429	5.4573	1	1670800	+		27745	25353	19113	19154	32056	32056					0.016743825231856135
IQACALLPDL	10	Unmodified	_IQACALLPDL_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.7897338867188	2	528.791535	1055.56852	-0.49371	-0.00026107	-1.0991	-0.00058121	-1.5928	-0.00084228	528.790723629104	104.68	0.77525	104.68	104.38	105.15	0					46	24	3	0	0	0	1.0002	1	13443	13443		45.972	0.020292	1	393470			27746	2482	19114	19155	32057	32057					0.04295553885413028
IQACLNFPK	9	Unmodified	_IQACLNFPK_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000285975|A6NNJ1|FAM90A9;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000285975|A6NKC0|FAM90A7;nc|ENSG00000285937|A6NJQ4|FAM90A8;ENSG00000229924|ENST00000512047|FAM90A26;ENSG00000171847|ENST00000538603|FAM90A1	nc|ENSG00000233295|A6NIJ5|FAM90A20;ENSG00000229924|ENST00000512047|FAM90A26	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3236083984375	2	517.278595	1032.54264	-0.0030149	-1.5595E-06	3.8316	0.001982	3.8286	0.0019804	517.2809146833232	64.059	0.21992	63.808	63.73	63.95	-0.25141					10	5	3	0	0	0	0.024381	1	7493	7493		55.504	3.205	1	103730			27747	18749;8203	19115	19156	32058	32058					0.02766704433747691
IQAILTGSLV	10	Unmodified	_IQAILTGSLV_					0	0	0		nc|ENSG00000105889|Q6NZ63-2|STEAP1B	nc|ENSG00000105889|Q6NZ63-2|STEAP1B	nc|ENSG00000105889|Q6NZ63-2|STEAP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	507.813325	1013.6121	0.43789	0.00022236	-0.96981	-0.00049248	-0.53193	-0.00027012	507.8127406955871	59.648	0.552	59.448	59.209	59.761	-0.20016					41	14	4	0	0	0	0.03519	1	6762	6762		41.427	7.505	1	1673700			27748	18150	19116	19157	32059	32059					0.1058348665419544
IQAKSRIN	8	Unmodified	_IQAKSRIN_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2801513671875	2	465.279983	928.545414	-0.188	-8.7473E-05	0.53497	0.00024891	0.34697	0.00016144	465.2799934559697	88.073	1.1725	87.9	87.497	88.67	-0.17254					86	28	5	0	0	0	1.0284	1	10697	10697		32.812	0.85756	1	1783100	+		27749	23878	19117	19158	32060	32060					0.07828295882950442
IQAKSRIN	8	Unmodified	_IQAKSRIN_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.28045654296875	2	465.279983	928.545414	0.28089	0.00013069	-0.081458	-3.7901E-05	0.19943	9.2792E-05	465.27981139819894	88.02	1.2618	87.888	87.477	88.739	-0.13254					76	30	4	0	0	0	1.0574	1	10716	10716		25.45	0.94616	1	1552700	+		27750	23878	19117	19158	32061	32061					0.07828295882950442
IQAKTKVPL	9	Unmodified	_IQAKTKVPL_					0	0	0			REV__ENST00000498905.2_1_11:9829849-9829963:+|nuORF	REV__ENST00000498905.2_1_11:9829849-9829963:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2875061035156	2	499.32386	996.633166	-0.84247	-0.00042067	-1.3113	-0.00065476	-2.1538	-0.0010754	499.3229526114094	55.532	0.33644	55.63	55.371	55.707	0.098015					11	8	2	0	0	0	0.023007	1	6077	6077		66.429	0	1	63371	+		27751	33892	19118	19159	32062	32062					0.13471496753720658
IQALPVPGL	9	Unmodified	_IQALPVPGL_					0	0	0		ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.28375244140625	2	454.284203	906.553853	-0.16643	-7.5605E-05	0.44646	0.00020282	0.28003	0.00012721	454.2843135424934	83.907	1.3987	83.907	83.477	84.876	0					66	32	4	0	0	0	0.40179	1	10497	10497		65.803	5.5092	1	1112500			27752	4048	19119	19160	32063	32063					0.09683849799580457
IQALPVPGL	9	Unmodified	_IQALPVPGL_					0	0	0		ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.2832336425781	2	454.284203	906.553853	-0.4676	-0.00021242	0.98831	0.00044898	0.52072	0.00023655	454.28447969843864	83.848	1.0288	83.874	83.469	84.498	0.02655					74	23	5	0	0	0	0.52323	1	10420	10420		57.811	0	1	1182200			27753	4048	19119	19160	32064	32064					0.09683849799580457
IQALQTYQ	8	Unmodified	_IQALQTYQ_					0	0	0		ENST00000413990.1_1_1:158146977-158147493:-|nuORF	ENST00000413990.1_1_1:158146977-158147493:-|nuORF	ENST00000413990.1_1_1:158146977-158147493:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2368469238281	2	482.758549	963.502546	0.17692	8.5409E-05	-0.42276	-0.00020409	-0.24584	-0.00011868	482.75815027769573	69.673	0.58032	69.451	69.226	69.806	-0.22245					35	13	4	0	0	0	0.027866	1	8100	8100		56.721	19.562	1	839050			27754	13854	19120	19161	32065	32065					0.019334810348595965
IQALTAVMN	9	Unmodified	_IQALTAVMN_					0	0	0		NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	480.76165771484375	2	480.762778	959.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.413	1	74.23	73.73	74.73	-0.18279								0	0	0	0.073652	1	8765	8765		98.629	5.4339	1				27755	5738	19121	19162	32066	32066					0.02962711679822405
IQAQHREY	8	Unmodified	_IQAQHREY_					0	0	0			REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2997436523438	2	522.764697	1043.51484	-0.61084	-0.00031933	-1.7536	-0.00091671	-2.3644	-0.001236	523.2646725398471	76.506	0.24691	76.506	76.391	76.637	0					6	5	2	0	0	0	0.027866	1	9436	9436		47.916	15.103	1	57336	+		27756	22191	19122	19163	32067	32067					-0.005174825020958451
IQARYPLL	8	Unmodified	_IQARYPLL_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|39|2|anti-sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|39|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2503967285156	2	487.295102	972.575651	-0.75116	-0.00036604	3.2537	0.0015855	2.5025	0.0012195	487.2965744510123	32.98	0.50865	32.987	32.813	33.321	0.0066261					22	13	2	0	0	0	0.027866	1	2366	2366		37.028	0	1	300760	+		27757	36015	19123	19164	32068	32068					0.08826654548136048
IQCDGENMY	9	Unmodified	_IQCDGENMY_					0	0	0			REV__ENSG00000019485|ENST00000683152|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7072143554688	2	536.707342	1071.40013	-0.54441	-0.00029219	0.24501	0.0001315	-0.2994	-0.00016069	536.7073116351955	56.862	1.2038	56.695	56.402	57.606	-0.1672					66	31	3	0	0	0	0.5973	1	6186	6186		52.937	0.63753	1	6407500	+		27758	19987	19124	19165	32069	32069					-0.13271296090556461
IQCDGENMY	9	Unmodified	_IQCDGENMY_					0	0	0			REV__ENSG00000019485|ENST00000683152|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.70751953125	2	536.707342	1071.40013	-0.42724	-0.0002293	0.073078	3.9222E-05	-0.35416	-0.00019008	536.7072120643876	56.957	0.86016	56.733	56.386	57.246	-0.2248					57	22	4	0	0	0	0.51687	1	6183	6183		58.23	3.4536	1	5809800	+		27759	19987	19124	19165	32070	32070					-0.13271296090556461
IQCDKLTL	8	Unmodified	_IQCDKLTL_					0	0	0			REV__ENSG00000204479|ENST00000376098|PRAMEF17	REV__ENSG00000204479|ENST00000376098|PRAMEF17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2559814453125	2	467.257328	932.500103	-0.14542	-6.7947E-05	-3.4376	-0.0016062	-3.583	-0.0016742	467.2556315786275	76.325	1.6628	76.325	75.806	77.469	0					114	40	4	0	0	0	0.28835	2	9378	9378;9475		116.9	3.0224	1	2889900	+		27760	28608	19125	19166	32071;32072	32071					0.031153093055309
IQCSKLLSD	9	Unmodified	_IQCSKLLSD_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.29766845703125	2	503.765517	1005.51648	-0.30735	-0.00015483	-1.2618	-0.00063567	-1.5692	-0.0007905	504.2667067501887	61.939	0.35704	61.682	61.464	61.821	-0.25725					11	8	2	0	0	0	0.024466	1	6930	6930		24.519	0	1	67105			27761	2515	19126	19167	32073	32073					0.013943904716484212
IQCSMRTMG	9	Unmodified	_IQCSMRTMG_					0	0	0			REV__ENST00000466643.1_1_1:171765831-171765885:+|nuORF	REV__ENST00000466643.1_1_1:171765831-171765885:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.30322265625	2	513.730097	1025.44564	0.77012	0.00039563	-1.0676	-0.00054846	-0.29749	-0.00015283	513.7294955616446	36.991	0.87339	36.782	36.24	37.114	-0.2092					42	21	3	0	0	0	0.024374	1	2965	2965		32.812	4.9302	1	767960	+		27762	33045	19127	19168	32074	32074					-0.06606349109165421
IQDAFADN	8	Unmodified	_IQDAFADN_					0	0	0		CON__Q9TT36	CON__Q9TT36	CON__Q9TT36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.25860595703125	2	447.203607	892.392661	0.1704	7.6202E-05	-2.9898	-0.0013371	-2.8194	-0.0012609	447.2022374056597	42.73	0.54113	42.756	42.393	42.934	0.026012					18	14	2	0	0	0	0.027866	1	3865	3865		10.265	0	1	189770		+	27763	574	19128	19169	32075	32075					-0.05783944304334909
IQDEKYYQI	9	Unmodified	_IQDEKYYQI_					0	0	0		nc|ENSG00000147099|Q9BY41-5|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-4|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.5545349121094	3	400.536278	1198.587	1.1563	0.00046314	-3.8341	-0.0015357	-2.6778	-0.0010726	400.5351093602116	26.787	0.54551	26.787	26.447	26.993	0					20	12	2	0	0	0	0.024438	1	1412	1412		29.17	13.837	1	56066			27764	5930	19129	19170	32076	32076					-0.004346129390569331
IQDFLDQGK	9	Unmodified	_IQDFLDQGK_					0	0	0			REV__ENSG00000095203|ENST00000374566|EPB41L4B	REV__ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3161010742188	2	532.274564	1062.53457	-0.2381	-0.00012673	0.21139	0.00011252	-0.026708	-1.4216E-05	532.2743058392368	22.238	0.42988	22.036	21.855	22.285	-0.20199					12	8	2	0	0	0	0.024418	1	719	719		30.318	0	1	43383	+		27765	20960	19130	19171	32077	32077					0.00580848718004745
IQDNVLKLD	9	Unmodified	_IQDNVLKLD_					0	0	0			REV__ENSG00000153822|ENST00000392671|KCNJ16	REV__ENSG00000153822|ENST00000392671|KCNJ16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.298095703125	2	529.298039	1056.58152	-0.73882	-0.00039106	-0.50571	-0.00026767	-1.2445	-0.00065873	529.2975257844018	52.092	1.3008	52.092	51.6	52.901	0					79	29	4	0	0	0	0.12914	2	5563	5551;5563		104.06	2.4561	1	9186100	+		27766	24913	19131	19172	32078;32079	32079					0.0554970826913177
IQDNVLKLD	9	Unmodified	_IQDNVLKLD_					0	0	0			REV__ENSG00000153822|ENST00000392671|KCNJ16	REV__ENSG00000153822|ENST00000392671|KCNJ16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.297607421875	2	529.298039	1056.58152	-0.37305	-0.00019746	-0.63765	-0.00033751	-1.0107	-0.00053496	529.2974143487326	52.191	1.264	52.043	51.609	52.873	-0.14735					103	32	7	0	0	0	0.17845	1	5563	5563		93.143	10.903	1	10431000	+		27767	24913	19131	19172	32080	32080					0.0554970826913177
IQDRVTLPN	9	Unmodified	_IQDRVTLPN_					0	0	0			REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF	REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.27490234375	2	528.29583	1054.57711	-0.55062	-0.00029089	1.946	0.001028	1.3953	0.00073716	528.29677325931	46.649	0.44012	46.649	46.412	46.852	0					27	11	3	0	0	0	0.024418	1	4645	4645		45.972	0	1	472990	+		27768	35814	19132	19173	32081	32081					0.05200243846252306
IQEEYVDQVS	10	Unmodified	_IQEEYVDQVS_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.2866821289062	2	605.285325	1208.5561	-1.1989	-0.00072566	1.9757	0.0011959	0.77686	0.00047022	605.2863716977504	57.733	0.79837	57.555	57.06	57.859	-0.17775					62	20	4	0	0	0	0.83673	1	6312	6312		58.23	6.7022	1	3666200			27769	11018	19133	19174	32082	32082					-0.039838110439632146
IQEFLFIRR	9	Unmodified	_IQEFLFIRR_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO	REV__nc|ENSG00000038382|O75962-5|TRIO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.3546752929688	2	611.358765	1220.70298	-2.5947	-0.0015863	-1.7351	-0.0010608	-4.3298	-0.0026471	611.3574819188858	91.613	1.3478	91.464	90.481	91.829	-0.1487					73	31	4	0	0	0	0.024539	1	11272	11272		20.947	0	1	1874000	+		27770	20078	19134	19175	32083	32083					0.10145375422303005
IQEHGKLQRI	10	Unmodified	_IQEHGKLQRI_					0	0	0			REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3515014648438	2	611.356754	1220.69895	-2.7989	-0.0017111	1.5262	0.00093306	-1.2726	-0.00077803	611.3575286656617	92.522	1.7327	92.379	91.617	93.35	-0.14356					150	40	4	0	0	0	1.0344	1	11452	11452		41.427	3.6151	1	4645400	+		27771	25087	19135	19176	32084	32084					0.09743285928607293
IQEHGKLQRI	10	Unmodified	_IQEHGKLQRI_					0	0	0			REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3549194335938	2	611.356754	1220.69895	-0.35919	-0.00021959	-1.0072	-0.00061577	-1.3664	-0.00083536	611.3559902690897	92.567	2.8634	92.445	90.59	93.453	-0.12241					191	67	5	0	0	0	1.0002	1	11442	11442		45.972	0	1	4932800	+		27772	25087	19135	19176	32085	32085					0.09743285928607293
IQEIKLKNPGR	11	Unmodified	_IQEIKLKNPGR_					0	0	0		ENST00000357482.5_1_17:5035679-5037292:+|nuORF;nc|ENSG00000129204|P35125-3|USP6;ENSG00000129204|ENST00000574788|USP6	ENST00000357482.5_1_17:5035679-5037292:+|nuORF	ENST00000357482.5_1_17:5035679-5037292:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	648.3904418945312	2	648.393336	1294.77212	1.3712	0.00088907	-2.4045	-0.0015591	-1.0333	-0.00067001	648.3917089448291	105.36	0.63876	105.36	105.12	105.76	0					41	15	4	0	0	0	1.0017	1	13514	13514		36.447	1.2947	1	1173700			27773	4335	19136	19177	32086	32086					0.13652414651210165
IQEKPALKV	9	Unmodified	_IQEKPALKV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2843627929688	2	513.321317	1024.62808	-0.57565	-0.00029549	-3.7576	-0.0019289	-4.3333	-0.0022244	513.319129580028	62.154	0.35329	61.927	61.766	62.119	-0.22663					12	9	2	0	0	0	0.024323	1	7210	7210		53.351	10.955	1	121320			27774	137	19137	19178	32087	32087					0.11675192891084407
IQELIVQW	8	Unmodified	_IQELIVQW_					0	0	0			REV__ENSG00000092096|ENST00000354772|SLC22A17	REV__ENSG00000092096|ENST00000354772|SLC22A17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2637939453125	2	514.792392	1027.57023	-0.74674	-0.00038441	-3.2352	-0.0016655	-3.9819	-0.0020499	514.7902519663359	48.261	0.48648	47.985	47.664	48.151	-0.27598					20	12	2	0	0	0	0.027866	1	4757	4757		24.203	4.206	1	475310	+		27775	20925	19138	19179	32088	32088					0.057549309656678815
IQEPAPAMSV	10	Unmodified	_IQEPAPAMSV_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2796020507812	2	521.765517	1041.51648	0.54387	0.00028377	-3.9699	-0.0020714	-3.426	-0.0017876	521.7635143859895	59.848	0.29296	59.672	59.592	59.885	-0.1761					10	7	2	0	0	0	0.03519	1	6667	6667		14.865	10.549	1	86791	+		27776	23335	19139	19180	32089	32089					-0.00261609528365625
IQEVHMVSDGI	11	Unmodified	_IQEVHMVSDGI_					0	0	0			REV__nc|ENSG00000053524|Q86YR7-3|MCF2L2	REV__nc|ENSG00000053524|Q86YR7-3|MCF2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5193176269531	3	409.872784	1226.59652	1.1461	0.00046976	0.12637	5.1794E-05	1.2725	0.00052156	409.8723044418678	24.756	0.82283	24.834	24.594	25.416	0.078344					38	18	3	0	0	0	0.024748	1	1051	1051		18.531	5.0231	1	82397	+		27777	20181	19140	19181	32090	32090					-0.007711679251769965
IQFLKDIRES	10	Unmodified	_IQFLKDIRES_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.7328796386719	3	416.903072	1247.68739	0.21103	8.7979E-05	0.84364	0.00035172	1.0547	0.0004397	416.903403946448	39.369	1.1287	39.143	38.806	39.934	-0.2257					71	29	4	0	0	0	0.03519	1	3321	3321		26.063	0	1	1052100			27778	7526	19141	19182	32091	32091					0.07345044114595112
IQFSAHEEY	9	Unmodified	_IQFSAHEEY_					0	0	0		ENST00000594070.5_1_19:19206777-19217195:+|nuORF;ENSG00000181035|ENST00000318596|SLC25A42	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	ENST00000594070.5_1_19:19206777-19217195:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.270751953125	2	562.256371	1122.49819	-0.37118	-0.0002087	-2.9608	-0.0016647	-3.332	-0.0018734	562.2541509039878	27.415	0.42385	27.172	26.911	27.335	-0.24217					14	9	2	0	0	0	0.024323	1	1496	1496		44.117	14.967	1	66208			27779	9019	19142	19183	32092	32092					-0.058160281787195345
IQFVFELIL	9	Unmodified	_IQFVFELIL_					0	0	0		ENST00000462785.1_1_2:112526870-112536431:-|nuORF	ENST00000462785.1_1_2:112526870-112536431:-|nuORF	ENST00000462785.1_1_2:112526870-112536431:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.3343505859375	2	561.333893	1120.65323	0.23007	0.00012915	1.4755	0.00082826	1.7056	0.00095741	561.3344176475864	105	0.39376	104.83	104.63	105.02	-0.16484					29	15	3	0	0	0	0.90698	1	13054	13054		31.955	7.7521	1	115260			27780	14720	19143	19184	32093	32093					0.09773247693669873
IQGGPFEEKI	10	Unmodified	_IQGGPFEEKI_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2978515625	2	559.298039	1116.58152	-0.15443	-8.6372E-05	0.2048	0.00011454	0.05037	2.8172E-05	559.2981030451526	93.138	1.0225	93.138	92.665	93.687	0					51	23	3	0	0	0	0.45418	1	11812	11812		93.143	0	1	2889800			27781	9818	19144	19185	32094	32094					0.027897082691197284
IQGGPFEEKI	10	Unmodified	_IQGGPFEEKI_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2979736328125	2	559.298039	1116.58152	-0.67612	-0.00037815	0.99452	0.00055623	0.3184	0.00017808	559.2983108745344	93.138	1.3059	93.134	92.52	93.826	-0.0042038					70	30	4	0	0	0	0.45418	1	11772	11772		93.143	13.692	1	2727200			27782	9818	19144	19185	32095	32095					0.027897082691197284
IQGGPFEEKI	10	Unmodified	_IQGGPFEEKI_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2978515625	2	559.298039	1116.58152	-0.195	-0.00010906	0.2578	0.00014419	0.062804	3.5126E-05	559.2981064440824	93.137	1.0193	93.145	92.587	93.606	0.0077286					55	23	4	0	0	0	0.42599	2	11732	11732;11741		96.034	2.8381	1	2736600			27783	9818	19144	19185	32096;32097	32096					0.027897082691197284
IQGHLWQGK	9	Unmodified	_IQGHLWQGK_					0	0	0		nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENSG00000076826|ENST00000160298|CAMSAP3;ENST00000595692.1_1_19:7679981-7682940:+|nuORF	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7737426757812	2	533.793258	1065.57196	-0.43693	-0.00023323	2.6891	0.0014354	2.2522	0.0012022	533.7957749880158	47.636	0.35336	47.539	47.314	47.667	-0.097553					15	9	2	0	0	0	0.024523	1	4654	4654		21.96	0	1	946030			27784	1591	19145	19186	32098	32098					0.04179984774282275
IQGLIVLA	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IQGLIVLA_					1	0	0			REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7798767089844	2	434.778754	867.542954	-0.014697	-6.39E-06	3.2031	0.0013926	3.1884	0.0013862	434.7800279350698	42.165	1.6534	42.042	41.111	42.765	-0.12299					112	43	3	0	0	0	0.94001	1	3786	3786		46.766	9.738	1	2497500	+		27785	32274	19146	19187	32099	32099					0.10388447425270897
IQGLIVLA	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IQGLIVLA_					1	0	0			REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7802734375	2	434.778754	867.542954	1.4087	0.00061247	1.711	0.00074391	3.1197	0.0013564	434.779355277664	36.149	1.9951	35.951	35.288	37.284	-0.19829					165	52	6	0	0	0	0.9224	1	2819	2819		49.211	10.189	1	8518400	+		27786	32274	19146	19187	32100	32100					0.10388447425270897
IQGLREKV	8	Unmodified	_IQGLREKV_					0	0	0		ENST00000392782.5_3_2:160303483-160304836:-|nuORF	ENST00000392782.5_3_2:160303483-160304836:-|nuORF	ENST00000392782.5_3_2:160303483-160304836:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.27459716796875	2	471.790184	941.565815	0.96746	0.00045644	-2.3213	-0.0010952	-1.3539	-0.00063874	471.7888208397689	49.37	0.40575	49.37	49.176	49.582	0					17	10	2	0	0	0	0.027866	1	5079	5079		23.042	12.177	1	125490			27787	13425	19147	19188	32101	32101					0.0926946654275298
IQGSELPEL	9	Unmodified	_IQGSELPEL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2633056640625	2	493.263665	984.512776	0.90884	0.0004483	-0.93341	-0.00046042	-0.024572	-1.2121E-05	493.2632028296755	71.047	1.3707	71.047	70.569	71.94	0					95	34	5	0	0	0	0.091713	1	8600	8600		113.41	8.665	1	11696000			27788	6240	19148	19189	32102	32102					0.01990043969431099
IQGSELPEL	9	Unmodified	_IQGSELPEL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2639465332031	2	493.263665	984.512776	0.75936	0.00037457	-0.83972	-0.0004142	-0.080356	-3.9637E-05	493.26327053213487	71.418	1.4371	71.13	70.546	71.983	-0.28858					114	36	6	0	0	0	0.15366	1	8629	8629		98.629	5.4339	1	11187000			27789	6240	19148	19189	32103	32103					0.01990043969431099
IQGSELPEL	9	Unmodified	_IQGSELPEL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.263671875	2	493.263665	984.512776	-0.011324	-5.586E-06	0.12152	5.9939E-05	0.11019	5.4353E-05	493.26372478067407	71.143	1.5242	71.154	70.465	71.989	0.010735					97	38	4	0	0	0	0.091713	1	8552	8552		113.41	11.811	1	11193000			27790	6240	19148	19189	32104	32104					0.01990043969431099
IQGVNGVVQ	9	Unmodified	_IQGVNGVVQ_					0	0	0		nc|ENSG00000113492|Q9BYV1-2|AGXT2;ENSG00000113492|ENST00000231420|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7427978515625	2	457.258717	912.50288	-0.054001	-2.4693E-05	1.6116	0.00073694	1.5576	0.00071225	457.25894793974123	45.649	0.51752	45.552	45.224	45.741	-0.096649					20	14	2	0	0	0	0.024457	1	4370	4370		5.9211	0	1	460310			27791	3297	19149	19190	32105	32105					0.04312900754723614
IQHARQQI	8	Unmodified	_IQHARQQI_					0	0	0			REV__ENST00000563451.1_1_15:42804044-42804128:+|nuORF	REV__ENST00000563451.1_1_15:42804044-42804128:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7684020996094	2	497.283057	992.551562	-0.88151	-0.00043836	-0.67428	-0.00033531	-1.5558	-0.00077367	497.2831963773478	81.842	1.2053	81.699	81.357	82.563	-0.14248					39	27	2	0	0	0	0.027866	1	9789	9789		19.36	0	1	1286500	+		27792	20935	19150	19191	32106	32106					0.05498814114469042
IQHDLIFSL	9	Unmodified	_IQHDLIFSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3027954101562	2	543.303124	1084.5917	1.1837	0.00064312	-1.5178	-0.00082462	-0.33407	-0.0001815	543.3022819432259	74.333	1.4825	74.333	73.999	75.481	0					75	36	3	0	0	0	0.027092	2	9082	9082;9094		143.89	9.076	1	9636800			27793	2235	19151	19192	32107;32108	32107					0.05278315994382865
IQHDLIFSL	9	Unmodified	_IQHDLIFSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3031616210938	2	543.303124	1084.5917	-0.2534	-0.00013767	-0.12115	-6.5822E-05	-0.37455	-0.0002035	543.3030164937979	74.606	1.4697	74.347	74.028	75.498	-0.25887					80	36	4	0	0	0	0.067814	1	9099	9099		122.18	5.2724	1	10820000			27794	2235	19151	19192	32109	32109					0.05278315994382865
IQHDLIFSL	9	Unmodified	_IQHDLIFSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3027954101562	2	543.303124	1084.5917	-1.2747	-0.00069256	0.86187	0.00046826	-0.41286	-0.00022431	543.3035353328938	74.367	1.592	74.376	74.051	75.643	0.0096512					86	39	4	0	0	0	0.043667	2	9023	9001;9023		131.03	14.128	1	9757800			27795	2235	19151	19192	32110;32111	32111					0.05278315994382865
IQHDLIFSL	9	Unmodified	_IQHDLIFSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.773193359375	2	543.303124	1084.5917	0.030618	1.6635E-05	-2.5474	-0.001384	-2.5168	-0.0013674	543.301548711995	74.545	0.39483	74.282	73.966	74.361	-0.26326					14	8	2	0	0	0	0.024313	1	8785	8785		42.864	0	1	1388700			27796	2235	19151	19192	32112	32112					0.05278315994382865
IQHINRIYR	9	Unmodified	_IQHINRIYR_					0	0	0		nc|ENSG00000182362|P58557-2|YBEY;ENST00000468924.5_1_21:47706310-47711400:+|nuORF;ENST00000492864.1_1_21:47706584-47711400:+|nuORF;ENSG00000182362|ENST00000397701|YBEY	nc|ENSG00000182362|P58557-2|YBEY	nc|ENSG00000182362|P58557-2|YBEY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9228515625	3	404.903518	1211.68872	0.51653	0.00020914	-1.7451	-0.00070658	-1.2285	-0.00049744	404.9032882160537	26.203	0.34852	26.034	25.84	26.188	-0.16816					16	10	3	0	0	0	0.024484	1	1336	1336		12.207	0	1	271400			27797	9132	19152	19193	32113	32113					0.09134722994031108
IQHINRIYR	9	Unmodified	_IQHINRIYR_					0	0	0		nc|ENSG00000182362|P58557-2|YBEY;ENST00000468924.5_1_21:47706310-47711400:+|nuORF;ENST00000492864.1_1_21:47706584-47711400:+|nuORF;ENSG00000182362|ENST00000397701|YBEY	nc|ENSG00000182362|P58557-2|YBEY	nc|ENSG00000182362|P58557-2|YBEY	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.903518	1211.68872	0.70064	0.00028369	-0.94236	-0.00038156	-0.24172	-9.7871E-05	404.902877288839	26.093	0.38055	26.093	25.823	26.203	0	-0.033804	0.0015977	NaN	17.468	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43781			27798	9132	19152	19193							0.09134722994031108
IQHINRIYR	9	Unmodified	_IQHINRIYR_					0	0	0		nc|ENSG00000182362|P58557-2|YBEY;ENST00000468924.5_1_21:47706310-47711400:+|nuORF;ENST00000492864.1_1_21:47706584-47711400:+|nuORF;ENSG00000182362|ENST00000397701|YBEY	nc|ENSG00000182362|P58557-2|YBEY	nc|ENSG00000182362|P58557-2|YBEY	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	404.903518	1211.68872	2.1086	0.00085379	-2.3191	-0.000939	-0.21044	-8.5206E-05	404.90220738685827	25.935	0.34103	26.016	25.749	26.09	0.08009	-0.11097	-7.4612E-05	NaN	17.468	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22834			27799	9132	19152	19193							0.09134722994031108
IQHPTASLI	9	Unmodified	_IQHPTASLI_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;ENSG00000146731|ENST00000275603|CCT6A;ENST00000419314.5_1_7:64498910-64527388:+|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.28216552734375	2	490.282192	978.549831	-0.50993	-0.00025001	0.40756	0.00019982	-0.10237	-5.0192E-05	490.28225733403997	48.594	0.916	48.441	48.125	49.041	-0.15277					60	25	3	0	0	0	0.32811	1	4979	4979		71.877	5.4482	1	2636600			27800	4575;18273	19153	19194	32114	32114					0.05969760305856653
IQHPTASLI	9	Unmodified	_IQHPTASLI_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;ENSG00000146731|ENST00000275603|CCT6A;ENST00000419314.5_1_7:64498910-64527388:+|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.282192	978.549831	-0.43883	-0.00021515	0.29718	0.0001457	-0.14164	-6.9445E-05	490.2821752802298	48.403	0.86438	48.403	48.105	48.969	0	0.018182	-4.347E-05	NaN	71.877	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2606800			27801	4575;18273	19153	19194							0.05969760305856653
IQHPTASLI	9	Unmodified	_IQHPTASLI_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;ENSG00000146731|ENST00000275603|CCT6A;ENST00000419314.5_1_7:64498910-64527388:+|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.282192	978.549831	-0.53539	-0.00026249	0.29662	0.00014543	-0.23877	-0.00011706	490.28217669377227	48.374	0.89928	48.441	48.043	48.943	0.066795	0.056476	-4.4027E-05	NaN	71.877	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2468800			27802	4575;18273	19153	19194							0.05969760305856653
IQHPTASLI	9	Unmodified	_IQHPTASLI_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;ENSG00000146731|ENST00000275603|CCT6A;ENST00000419314.5_1_7:64498910-64527388:+|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.282192	978.549831	-1.0281	-0.00050405	-0.13002	-6.3749E-05	-1.1581	-0.0005678	490.28144920611425	48.351	0.80452	48.253	47.705	48.51	-0.097553	-0.1311	-0.00046238	NaN	71.877	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250680			27803	4575;18273	19153	19194							0.05969760305856653
IQHSEFEEV	9	Unmodified	_IQHSEFEEV_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2608032226562	2	559.261653	1116.50875	-0.83313	-0.00046594	-0.18026	-0.00010081	-1.0134	-0.00056675	559.2616375805869	43.432	1.0538	43.432	43.002	44.056	0					75	28	5	0	0	0	0.12602	2	4072	4072;4083		104.75	16.992	1	4069500			27804	2881	19154	19195	32115;32116	32115					-0.0448404552428201
IQHSEFEEV	9	Unmodified	_IQHSEFEEV_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2610473632812	2	559.261653	1116.50875	-1.0296	-0.00057581	0.24302	0.00013591	-0.78656	-0.00043989	559.2617099566883	43.648	0.75188	43.503	43.279	44.031	-0.14471					32	20	2	0	0	0	0.19099	2	4079	4079;4090		90.37	26.163	1	3782500			27805	2881	19154	19195	32117;32118	32117					-0.0448404552428201
IQHSEFEEV	9	Unmodified	_IQHSEFEEV_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2605590820312	2	559.261653	1116.50875	0.1166	6.5207E-05	-0.92306	-0.00051623	-0.80647	-0.00045103	559.2610124493241	43.544	0.65324	43.575	43.376	44.029	0.030827					34	17	2	0	0	0	0.091713	2	4028	4028;4040		113.41	18.033	1	4089800			27806	2881	19154	19195	32119;32120	32119					-0.0448404552428201
IQIICLAVL	9	Unmodified	_IQIICLAVL_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	493.309364	984.604174	-0.27936	-0.00013781	3.2576	0.001607	2.9783	0.0014692	493.31027966771006	41.924	0.34489	41.791	41.641	41.985	-0.13219					14	9	2	0	0	0	0.023355	1	3772	3772		76.847	2.8719	1	93534			27807	752	19155	19196	32121	32121					0.11125636133056105
IQIIYFNL	8	Unmodified	_IQIIYFNL_					0	0	0		nc|ENSG00000292363|Q9HC73-2|CRLF2;ENSG00000205755|ENST00000400841|CRLF2	nc|ENSG00000292363|Q9HC73-2|CRLF2	nc|ENSG00000292363|Q9HC73-2|CRLF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.8048706054688	2	512.29731	1022.58007	-0.36675	-0.00018789	1.4039	0.00071923	1.0372	0.00053134	512.2988198041106	63.201	0.28246	62.961	62.778	63.06	-0.23926					12	6	2	0	0	0	0.027866	1	7322	7322		25.45	0	1	150480			27808	10443	19156	19197	32122	32122					0.0696811897103089
IQINNPFNAG	10	Unmodified	_IQINNPFNAG_					0	0	0			REV__nc|ENSG00000155511|P42261-3|GRIA1	REV__nc|ENSG00000155511|P42261-3|GRIA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2980346679688	2	544.28018	1086.54581	-0.23098	-0.00012572	0.24297	0.00013224	0.011992	6.5269E-06	545.2824999913722	53.697	1.0298	53.452	52.657	53.687	-0.2453					58	27	4	0	0	0	0.03519	1	5675	5675		19.997	0	1	881360	+		27809	25009	19157	19198	32123	32123					0.005996708121301708
IQIQESHV	8	Unmodified	_IQIQESHV_					0	0	0			REV__CON__P19001	REV__CON__P19001	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.25567626953125	2	477.256174	952.497795	0.14556	6.947E-05	0.16456	7.8538E-05	0.31012	0.00014801	477.25609237097115	41.619	1.0694	41.642	41.182	42.252	0.023006					96	30	5	0	0	0	0.42327	1	3697	3697		94.006	5.3636	1	5221700	+	+	27810	19556	19158	19199	32124	32124					0.019645968920940504
IQIRGQILQ	9	Unmodified	_IQIRGQILQ_					0	0	0		ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant;ENSG00000073331|ENST00000650871|ALPK1;nc|ENSG00000073331|Q96QP1-2|ALPK1;ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant;ENST00000509209.1_1_4:113345056-113346918:+|nuORF;ENST00000504745.1_1_4:113303669-113346918:+|nuORF	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.8302612304688	2	534.82984	1067.64513	0.48395	0.00025883	-0.63503	-0.00033963	-0.15108	-8.0804E-05	534.8294903600533	63.624	0.90188	63.624	63.336	64.238	0					58	24	3	0	0	0	0.43973	1	7454	7454		63.306	4.5243	1	3632000			27811	65	19159	19200	32125	32125					0.1140111349691324
IQIRGQILQ	9	Unmodified	_IQIRGQILQ_					0	0	0		ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant;ENSG00000073331|ENST00000650871|ALPK1;nc|ENSG00000073331|Q96QP1-2|ALPK1;ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant;ENST00000509209.1_1_4:113345056-113346918:+|nuORF;ENST00000504745.1_1_4:113303669-113346918:+|nuORF	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.82984	1067.64513	-0.33616	-0.00017979	0.02805	1.5002E-05	-0.30811	-0.00016479	534.8298111134209	63.825	1.3965	63.574	63.336	64.733	-0.25141	-0.05096	0.00055649	NaN	63.306	74	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3197600			27812	65	19159	19200							0.1140111349691324
IQIRGQILQ	9	Unmodified	_IQIRGQILQ_					0	0	0		ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant;ENSG00000073331|ENST00000650871|ALPK1;nc|ENSG00000073331|Q96QP1-2|ALPK1;ALPK1|p.E371Gfs*13|1|0.32|ENSG00000073331|chr4:112430654-112430655|-/G|frameshift_variant;ENST00000509209.1_1_4:113345056-113346918:+|nuORF;ENST00000504745.1_1_4:113303669-113346918:+|nuORF	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.82984	1067.64513	1.1377	0.00060847	-1.3367	-0.00071493	-0.19905	-0.00010646	534.8290263920557	63.622	1.157	63.676	63.338	64.495	0.054104	0.051404	-0.00090338	NaN	63.306	80	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3033400			27813	65	19159	19200							0.1140111349691324
IQITNRGPQ	9	Unmodified	_IQITNRGPQ_					0	0	0			REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF	REV__ENST00000478045.5_1_7:44801192-44807219:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.303955078125	2	513.788173	1025.56179	-0.62528	-0.00032126	0.79038	0.00040609	0.1651	8.4828E-05	513.7882169197486	29.676	0.68578	29.679	29.351	30.036	0.0031357					20	16	3	0	0	0	0.024209	1	1845	1845		47.657	0	1	120170	+		27814	21713	19160	19201	32126	32126					0.05003377049047231
IQKAEWLR	8	Unmodified	_IQKAEWLR_					0	0	0		nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2924194335938	2	522.303458	1042.59236	-0.27239	-0.00014227	3.8236	0.0019971	3.5512	0.0018548	522.3052315415503	19.404	0.54354	19.286	18.854	19.397	-0.11872					16	10	2	0	0	0	0.027866	1	385	385		11.511	0	1	32198			27815	18544	19161	19202	32127	32127					0.07277155434053384
IQKARKSI	8	Unmodified	_IQKARKSI_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.28790283203125	2	472.306001	942.597449	0.58254	0.00027514	1.8523	0.00087485	2.4348	0.00115	472.3071745507546	94.264	0.48859	94.264	94.128	94.616	0					16	11	2	0	0	0	0.027866	1	12014	12014		29.15	6.1071	1	261810			27816	3925	19162	19203	32128	32128					0.12385459296706358
IQKASRRKY	9	Unmodified	_IQKASRRKY_					0	0	0		ENST00000247452.3_1_X:141290827-141290884:-|nuORF	ENST00000247452.3_1_X:141290827-141290884:-|nuORF	ENST00000247452.3_1_X:141290827-141290884:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3455810546875	2	575.346189	1148.67783	0.60113	0.00034586	-1.9062	-0.0010967	-1.3051	-0.00075088	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	0.94809	1	12315	12315		29.15	2.4566	1	3650400			27817	11326	19163	19204	32129	32129					0.10943320619730912
IQKFPVGR	8	Unmodified	_IQKFPVGR_					0	0	0		TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant;nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant	TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7288513183594	2	472.787444	943.560336	-0.62307	-0.00029458	4.2693	0.0020185	3.6463	0.0017239	472.78932647625413	30.05	0.44285	30.05	29.773	30.216	0					16	10	2	0	0	0	0.027866	1	1898	1898		18.324	6.1176	1	176940			27818	8806	19164	19205	32130	32130					0.08629787750942342
IQKFPVGR	8	Unmodified	_IQKFPVGR_					0	0	0		TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant;nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant	TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.787444	943.560336	-0.13019	-6.1554E-05	3.4217	0.0016178	3.2915	0.0015562	472.7889376602318	30.003	0.57589	30.011	29.797	30.373	0.0086708	0.024102	-0.00042439	NaN	18.324	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190560			27819	8806	19164	19205							0.08629787750942342
IQKFPVGR	8	Unmodified	_IQKFPVGR_					0	0	0		TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant;nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant	TMPRSS9|p.P744Lfs*54|1|0.07|ENSG00000178297|chr19:2422031-2422032|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.787444	943.560336	-0.65069	-0.00030764	3.9936	0.0018881	3.343	0.0015805	472.7891898597691	29.822	0.49213	29.901	29.724	30.216	0.078346	-0.086497	0.00011639	NaN	18.324	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194500			27820	8806	19164	19205							0.08629787750942342
IQKFSQAS	8	Unmodified	_IQKFSQAS_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7445373535156	2	454.745442	907.476331	0.47062	0.00021401	-1.899	-0.00086356	-1.4284	-0.00064954	454.74449165346823	101.24	1.4761	101.24	100.76	102.24	-0.0054474					99	33	4	0	0	0	0.98759	1	12950	12950		39.253	5.7372	1	3938500			27821	6756	19165	19206	32131	32131					0.01889211863374385
IQKGAAFLGL	10	Unmodified	_IQKGAAFLGL_					0	0	0		nc|ENSG00000139631|Q9Y600-2|CSAD;ENSG00000139631|ENST00000444623|CSAD;nc|ENSG00000139631|Q9Y600-3|CSAD;ENST00000475890.5_1_12:53554625-53565697:-|nuORF	nc|ENSG00000139631|Q9Y600-2|CSAD	nc|ENSG00000139631|Q9Y600-2|CSAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3059997558594	2	509.30821	1016.60187	-1.5235	-0.00077591	-2.7579	-0.0014046	-4.2813	-0.0021805	509.30666606233405	91.952	1.3811	91.803	91.353	92.734	-0.1487					100	32	4	0	0	0	1.1259	1	11300	11300		24.203	0	1	3302400			27822	5351	19166	19207	32132	32132					0.09422923719591836
IQKIGGIF	8	Unmodified	_IQKIGGIF_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.1990051269531	2	438.271096	874.527639	-0.26383	-0.00011563	0.62752	0.00027503	0.36369	0.00015939	438.2711467803843	61.314	0.85857	61.108	60.734	61.592	-0.20599					45	20	3	0	0	0	0.027866	1	6915	6915		20.482	1.1219	1	279750			27823	7162	19167	19208	32133	32133					0.0853558062809725
IQKIGGIF	8	Unmodified	_IQKIGGIF_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	438.271096	874.527639	-0.90835	-0.0003981	1.0011	0.00043877	0.092781	4.0663E-05	438.271334204929	61.222	0.89631	61.045	60.559	61.455	-0.1761	-0.039419	0.00029394	NaN	20.482	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307090			27824	7162	19167	19208							0.0853558062809725
IQKIGGIF	8	Unmodified	_IQKIGGIF_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	438.271096	874.527639	-0.066291	-2.9054E-05	0.30778	0.00013489	0.24149	0.00010584	438.2710135325393	61.359	0.85305	61.101	60.694	61.547	-0.25725	0.016419	-0.00031381	NaN	20.482	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266050			27825	7162	19167	19208							0.0853558062809725
IQKIKYKD	8	Unmodified	_IQKIKYKD_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2701416015625	2	518.313492	1034.61243	-0.80159	-0.00041548	0.6057	0.00031394	-0.19589	-0.00010154	518.3124930324964	25.793	0.25201	25.566	25.434	25.686	-0.22683					13	5	3	0	0	0	0.027866	1	1253	1253		34.173	0	1	62854	+		27826	26361	19168	19209	32134	32134					0.09650906374031365
IQKITHLR	8	Unmodified	_IQKITHLR_					0	0	0			REV__nc|ENSG00000104067|Q07157|TJP1	REV__nc|ENSG00000104067|Q07157|TJP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.7796325683594	2	504.819276	1007.624	-1.3908	-0.00070211	-0.85563	-0.00043194	-2.2464	-0.001134	504.81873995917204	62.532	0.55112	62.292	62.144	62.695	-0.23926					21	16	2	0	0	0	0.027866	1	7247	7247		29.15	4.9468	1	1161500	+		27827	21416	19169	19210	32135	32135					0.12049148188020808
IQKKLEAA	8	Unmodified	_IQKKLEAA_					0	0	0		ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2;nc|ENSG00000015592|Q9H169-3|STMN4;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1	ENSG00000104435|ENST00000220876|STMN2;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENSG00000104435|ENST00000220876|STMN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2438049316406	2	450.779285	899.544017	-0.62299	-0.00028083	0.39551	0.00017829	-0.22749	-0.00010255	450.779287593624	30.569	0.78777	30.391	30.124	30.912	-0.17817					43	18	4	0	0	0	0.027866	1	2027	2027		32.812	7.2384	1	1396700			27828	2572;3649	19170	19211	32136	32136					0.09022661794176656
IQKLEELNR	9	Unmodified	_IQKLEELNR_					0	0	0		ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENST00000457262.1_1_10:43062145-43062928:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.8297729492188	2	571.830037	1141.64552	-0.57662	-0.00032973	-0.050788	-2.9042E-05	-0.62741	-0.00035877	571.8300030646996	41.806	1.1374	41.806	41.505	42.642	0					103	32	5	0	0	0	0.027092	1	3807	3807		143.89	5.8244	1	11111000			27829	14606	19171	19212	32137	32137					0.08036488426091637
IQKLEELNR	9	Unmodified	_IQKLEELNR_					0	0	0		ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENST00000457262.1_1_10:43062145-43062928:+|nuORF	ENST00000457262.1_1_10:43062145-43062928:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.8295288085938	2	571.830037	1141.64552	-0.28322	-0.00016196	-0.29353	-0.00016785	-0.57675	-0.0003298	571.8298780270322	42.022	1.1812	41.89	41.528	42.709	-0.1322					105	33	5	0	0	0	0.016758	1	3826	3826		153.04	7.8802	1	9964300			27830	14606	19171	19212	32138	32138					0.08036488426091637
IQKLQEKTLRN	11	Unmodified	_IQKLQEKTLRN_					0	0	0			REV__nc|ENSG00000108523|Q9H6Y7-2|RNF167	REV__nc|ENSG00000108523|Q9H6Y7-2|RNF167	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.60791015625	3	457.608659	1369.80415	0.77891	0.00035644	-2.1925	-0.0010033	-1.4136	-0.00064687	457.6077655587918	98.898	1.8258	98.761	97.927	99.752	-0.13625					121	44	3	0	0	0	1.0834	1	12239	12239		15.921	1.8346	1	383140	+		27831	21743	19172	19213	32139	32139					0.1340378233435331
IQKLQNER	8	Unmodified	_IQKLQNER_					0	0	0		nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1;ASZ1|p.E431V|1|0.28|ENSG00000154438|chr7:117363732-117363732|T/A|missense_variant	nc|ENSG00000154438|Q8WWH4-2|ASZ1	nc|ENSG00000154438|Q8WWH4-2|ASZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7733154296875	2	514.795998	1027.57744	-0.48612	-0.00025026	2.4724	0.0012728	1.9863	0.0010225	515.2985371498017	66.886	0.29852	66.604	66.499	66.798	-0.28148					10	7	2	0	0	0	0.027866	1	7940	7940		15.642	1.5047	1	255790			27832	6410	19173	19214	32140	32140					0.06475663566061485
IQKREFLRQ	9	Unmodified	_IQKREFLRQ_					0	0	0		ENSG00000150783|ENST00000280358|TEX12	ENSG00000150783|ENST00000280358|TEX12	ENSG00000150783|ENST00000280358|TEX12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5873107910156	3	406.57529	1216.70404	-0.18268	-7.4275E-05	-1.4432	-0.00058679	-1.6259	-0.00066106	406.57513915479353	25.503	0.54121	25.277	25.018	25.559	-0.22683					22	12	3	0	0	0	0.024337	1	1198	1198		58.23	13.853	1	205060			27833	6156	19174	19215	32141	32141					0.1043558979122281
IQKREFLRQ	9	Unmodified	_IQKREFLRQ_					0	0	0		ENSG00000150783|ENST00000280358|TEX12	ENSG00000150783|ENST00000280358|TEX12	ENSG00000150783|ENST00000280358|TEX12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	406.57529	1216.70404	0.31357	0.00012749	-7.9912	-0.003249	-7.6776	-0.0031215	406.5718110507326	25.493	0.32865	25.493	25.324	25.652	0	0.22788	-0.0028195	NaN	58.23	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36383			27834	6156	19174	19215							0.1043558979122281
IQKSNKTYHR	10	Unmodified	_IQKSNKTYHR_					0	0	0			REV__nc|ENSG00000198373|O00308-3|WWP2	REV__nc|ENSG00000198373|O00308-3|WWP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.20147705078125	3	425.570316	1273.68912	-0.016747	-7.1269E-06	3.1881	0.0013567	3.1713	0.0013496	425.5713914048267	34.487	1.3393	34.28	33.86	35.199	-0.20696					93	33	4	0	0	0	0.03519	1	2527	2527		19.263	13.262	1	1657500	+		27835	28416	19175	19216	32142	32142					0.06322097923225556
IQKVYSII	8	Unmodified	_IQKVYSII_					0	0	0		TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant	TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant	TMBIM1|p.R100Q|1|0.08|ENSG00000135926|chr2:218280030-218280030|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2968444824219	2	482.29731	962.580068	0.38607	0.0001862	-0.84319	-0.00040667	-0.45712	-0.00022047	482.2968322647328	46.128	0.79769	46.031	45.741	46.539	-0.096653					62	21	4	0	0	0	0.50239	1	4433	4433		85.359	3.0545	1	5795100			27836	38079	19176	19217	32143	32143					0.09728118971031563
IQLADHLL	8	Unmodified	_IQLADHLL_					0	0	0			REV__ENSG00000104892|ENST00000391946|KLC3	REV__ENSG00000104892|ENST00000391946|KLC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.75897216796875	2	461.77146	921.528367	-0.24853	-0.00011477	-1.576	-0.00072777	-1.8246	-0.00084254	461.77057911270384	36.631	0.12041	36.589	36.529	36.649	-0.042454					4	2	2	0	0	0	0.027866	1	2911	2911		7.6903	0	1	75527	+		27837	21480	19177	19218	32144	32144					0.064463752771303
IQLALFFF	8	Unmodified	_IQLALFFF_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|54|3|anti-sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|54|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.79205322265625	2	499.789121	997.56369	-0.72475	-0.00036222	3.4226	0.0017106	2.6979	0.0013484	499.79077422265095	29.637	1.0568	29.464	29.113	30.17	-0.17258					46	24	4	0	0	0	0.94001	1	1807	1807		46.766	2.2354	1	4109400	+		27838	36247	19178	19219	32145	32145					0.06481037804940115
IQLDLEMIT	9	Unmodified	_IQLDLEMIT_					0	0	0		ENSG00000140092|ENST00000342058|FBLN5;ENST00000556961.1_1_14:92336570-92339843:-|nuORF	ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3047485351562	2	538.288825	1074.5631	-0.33143	-0.00017841	-1.5987	-0.00086059	-1.9302	-0.001039	538.287921868978	68.86	0.34489	68.567	68.251	68.596	-0.29267					13	8	2	0	0	0	0.024374	1	8215	8215		32.812	0	1	92763			27839	5392	19179	19220	32146	32146					0.028798303029361705
IQLDSNISTT	10	Unmodified	_IQLDSNISTT_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3165283203125	2	546.282586	1090.55062	-0.20403	-0.00011146	4.0422	0.0022082	3.8382	0.0020967	546.2845352812843	91.682	0.9455	91.542	91.147	92.093	-0.13942					45	21	3	0	0	0	0.03519	1	11182	11182		31.53	0	1	311330	+		27840	28084	19180	19221	32147	32147					0.008965101642161244
IQLILPVS	8	Unmodified	_IQLILPVS_					0	0	0		ENST00000255304.8_1_13:31233032-31233128:+|nuORF	ENST00000255304.8_1_13:31233032-31233128:+|nuORF	ENST00000255304.8_1_13:31233032-31233128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7877197265625	2	441.786579	881.558604	-0.73639	-0.00032533	3.7839	0.0016717	3.0475	0.0013464	441.78816325900505	40.674	1.7833	40.537	40.09	41.874	-0.13704					126	47	4	0	0	0	0.93274	2	3580	3556;3580		47.916	7.343	1	20144000			27841	11388	19181	19222	32148;32149	32149					0.11308733942325944
IQLILPVS	8	Unmodified	_IQLILPVS_					0	0	0		ENST00000255304.8_1_13:31233032-31233128:+|nuORF	ENST00000255304.8_1_13:31233032-31233128:+|nuORF	ENST00000255304.8_1_13:31233032-31233128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7878112792969	2	441.786579	881.558604	-0.29735	-0.00013137	3.287	0.0014522	2.9897	0.0013208	441.7879427918054	40.843	1.9371	40.615	40.184	42.121	-0.2278					180	51	6	0	0	0	0.91239	3	3603	3579;3591;3603		50.025	9.4519	1	18973000			27842	11388	19181	19222	32150;32151;32152	32152					0.11308733942325944
IQLKIVDW	8	Unmodified	_IQLKIVDW_					0	0	0			REV__ENSG00000164073|ENST00000641686|MFSD8	REV__ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8030700683594	2	507.80276	1013.59097	-0.72921	-0.0003703	-0.36438	-0.00018503	-1.0936	-0.00055533	507.8023889068046	90.906	0.7411	90.781	90.416	91.158	-0.12512					36	17	3	0	0	0	0.6536	1	11172	11172		71.296	2.5089	1	1843200	+		27843	25685	19182	19223	32153	32153					0.08471521345313704
IQLKLVYD	8	Unmodified	_IQLKLVYD_					0	0	0		PPARA|p.R131Q|1|0.26|ENSG00000186951|chr22:46218285-46218285|G/A|missense_variant	PPARA|p.R131Q|1|0.26|ENSG00000186951|chr22:46218285-46218285|G/A|missense_variant	PPARA|p.R131Q|1|0.26|ENSG00000186951|chr22:46218285-46218285|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.766357421875	2	496.294768	990.574983	-0.52898	-0.00026253	-0.95993	-0.00047641	-1.4889	-0.00073894	496.2945299619831	62.526	0.39093	62.268	61.936	62.327	-0.25824					22	9	3	0	0	0	0.027866	1	7008	7008		37.159	0	1	503730			27844	18983	19183	19224	32154	32154					0.0793181510841805
IQLLQKLTY	9	Unmodified	_IQLLQKLTY_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3410034179688	2	560.342249	1118.66995	0.39378	0.00022065	-4.1525	-0.0023268	-3.7587	-0.0021062	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	0.92825	1	12642	12642		30.504	2.6214	1	14365000			27845	7090	19184	19225	32155	32155					0.11535748579603933
IQLLQKLTY	9	Unmodified	_IQLLQKLTY_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.34033203125	2	560.342249	1118.66995	-0.071418	-4.0019E-05	-3.7355	-0.0020932	-3.8069	-0.0021332	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	0.87448	1	12538	12538		34.173	1.3601	1	13448000			27846	7090	19184	19225	32156	32156					0.11535748579603933
IQLLQRVIFL	10	Unmodified	_IQLLQRVIFL_					0	0	0			REV__ENSG00000162378|ENST00000294353|ZYG11B	REV__ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.90087890625	2	621.900266	1241.78598	0.28795	0.00017907	0.49143	0.00030562	0.77938	0.0004847	621.9003556983982	105.24	0.4091	105.24	105.02	105.43	0.00096893					30	12	3	0	0	0	1.1031	1	13483	13483		12.207	0	1	2214000	+		27847	25432	19185	19226	32157	32157					0.1747569215031035
IQLPSVNTV	9	Unmodified	_IQLPSVNTV_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.78131103515625	2	485.782025	969.549496	0.55647	0.00027032	-0.86314	-0.0004193	-0.30666	-0.00014897	485.7815796504725	70.552	0.5878	70.552	70.281	70.868	0					26	13	3	0	0	0	0.30449	2	8523	8523;8536		75.043	11.271	1	905080			27848	9775	19186	19227	32158;32159	32158					0.06350340585993308
IQLPSVNTV	9	Unmodified	_IQLPSVNTV_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.780029296875	2	485.782025	969.549496	-0.47452	-0.00023051	0.22453	0.00010907	-0.24999	-0.00012144	485.78207533675146	70.6	0.93386	70.613	70.347	71.28	0.012421					35	22	3	0	0	0	0.12914	1	8453	8453		104.06	7.8664	1	961980			27849	9775	19186	19227	32160	32160					0.06350340585993308
IQLQSRQPK	9	Unmodified	_IQLQSRQPK_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-3|LY9	REV__nc|ENSG00000122224|Q9HBG7-3|LY9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.7985229492188	2	549.324922	1096.63529	-0.83418	-0.00045824	0.28582	0.00015701	-0.54836	-0.00030123	549.3251162655255	22.256	0.76093	22.181	21.793	22.554	-0.075296					37	15	4	0	0	0	0.022587	1	715	715		74.255	12.148	1	173640	+		27850	22633	19187	19228	32161	32161					0.0908392549151813
IQLRDWLERIQ	11	Unmodified	_IQLRDWLERIQ_					0	0	0			REV__nc|ENSG00000198901|O43663-3|PRC1	REV__nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7720947265625	3	490.612292	1468.81505	0.016591	8.1398E-06	2.1985	0.0010786	2.215	0.0010867	490.6134539811982	42.877	0.65758	42.903	42.529	43.186	0.026016					30	17	2	0	0	0	0.024757	1	3888	3888		20.315	0	1	540020	+		27851	28513	19188	19229	32162	32162					0.0993918470862809
IQLVAAVVHA	10	Unmodified	_IQLVAAVVHA_					0	0	0			REV__ENSG00000159961|ENST00000641141|OR3A3	REV__ENSG00000159961|ENST00000641141|OR3A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.802734375	2	510.813659	1019.61277	-0.27023	-0.00013804	3.485	0.0017802	3.2147	0.0016421	510.8156417002354	52.38	0.93119	52.472	52.119	53.05	0.091938					32	23	2	0	0	0	0.03519	1	5516	5516		44.117	6.9577	1	79455	+		27852	25284	19189	19230	32163	32163					0.10374326093892705
IQLVLFRQIL	10	Unmodified	_IQLVLFRQIL_					0	0	0			REV__ENSG00000163689|ENST00000482387|CFAP20DC	REV__ENSG00000163689|ENST00000482387|CFAP20DC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.9007568359375	2	621.900266	1241.78598	0.08008	4.9802E-05	0.82368	0.00051225	0.90376	0.00056205	621.9004442619971	105.28	0.42126	105.28	105.06	105.48	0					31	10	4	0	0	0	1.1197	1	13533	13533		20.947	4.4738	1	1795800	+		27853	25618	19190	19231	32164	32164					0.1747569215033309
IQMAIFLPE	9	Unmodified	_IQMAIFLPE_					0	0	0			REV__ENST00000280557.10_1_12:123255252-123255318:+|nuORF	REV__ENST00000280557.10_1_12:123255252-123255318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3067626953125	2	531.288628	1060.5627	0.051292	2.7251E-05	2.3725	0.0012605	2.4237	0.0012877	531.2883084102834	58.781	0.39148	58.781	58.643	59.035	0					11	10	2	0	0	0	0.024292	1	6663	6663		58.782	11.125	1	134080	+		27854	29877	19191	19232	32165	32165					0.03484455373745732
IQMGKRCSC	9	Unmodified	_IQMGKRCSC_					0	0	0			REV__ELP3-MYO5C|1|fusion;REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2850952148438	2	513.238089	1024.46163	-0.87635	-0.00044978	0.76192	0.00039105	-0.11443	-5.8732E-05	513.2385712562495	61.887	0.4009	61.887	61.643	62.044	0					18	10	2	0	0	0	0.024506	1	7195	7195		23.042	0	1	254440	+		27855	23011;19748	19192	19233	32166	32166					-0.04962642872271772
IQMINDQSV	9	Unmodified	_IQMINDQSV_					0	0	0			REV__RBBP7|p.E394Q|1|0.07|ENSG00000102054|chrX:16845857-16845857|C/G|missense_variant	REV__RBBP7|p.E394Q|1|0.07|ENSG00000102054|chrX:16845857-16845857|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3098754882812	2	524.260599	1046.50665	-0.0027447	-1.439E-06	-2.6577	-0.0013933	-2.6605	-0.0013948	524.260969836759	71.727	0.31216	71.451	71.354	71.666	-0.27509					10	7	2	0	0	0	0.024319	1	8367	8367		31.53	7.3271	1	70071	+		27856	37430	19193	19234	32167	32167					-0.014747975337513708
IQMQCNLER	9	Unmodified	_IQMQCNLER_					0	0	0		ENST00000527545.1_1_8:144917834-144919303:-|nuORF;nc|ENSG00000185189|Q9NSY0-2|NRBP2;ENST00000423469.6_1_8:144917834-144920143:-|nuORF;nc|ENSG00000185189|Q9NSY0-4|NRBP2;ENST00000529747.5_1_8:144917890-144921694:-|nuORF;ENSG00000185189|ENST00000442628|NRBP2	ENST00000527545.1_1_8:144917834-144919303:-|nuORF	ENST00000527545.1_1_8:144917834-144919303:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2935180664062	2	567.773351	1133.53215	0.19813	0.00011249	-0.77743	-0.0004414	-0.5793	-0.00032891	567.7730280812972	20.591	0.44257	20.66	20.366	20.808	0.068901					12	8	2	0	0	0	0.024541	1	480	480		21.96	1.9631	1	14993			27857	9415	19194	19235	32168	32168					-0.029276462829784577
IQMRDLEGYR	10	Unmodified	_IQMRDLEGYR_					0	0	0		ENSG00000172766|ENST00000379406|NAA16;nc|ENSG00000172766|Q6N069-5|NAA16;ENST00000476980.5_1_13:41885589-41929305:+|nuORF;nc|ENSG00000172766|Q6N069-4|NAA16;nc|ENSG00000172766|Q6N069-3|NAA16;nc|ENSG00000172766|Q6N069-2|NAA16;nc|ENSG00000164134|Q9BXJ9-4|NAA15;NAA15|p.N614Mfs*22|1|0.54|ENSG00000164134|chr4:139370291-139370291|A/-|frameshift_variant;ENSG00000164134|ENST00000296543|NAA15	ENSG00000172766|ENST00000379406|NAA16;nc|ENSG00000164134|Q9BXJ9-4|NAA15	ENSG00000172766|ENST00000379406|NAA16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7296447753906	3	427.552045	1279.63431	-0.62908	-0.00026896	-1.0779	-0.00046087	-1.707	-0.00072983	427.88612178806335	29.342	0.56059	29.096	28.838	29.399	-0.24524					22	12	2	0	0	0	0.03519	1	1753	1753		20.03	0	1	230320			27858	8303;7223	19195	19236	32169	32169					0.005673430603110319
IQNEKEPMQ	9	Unmodified	_IQNEKEPMQ_					0	0	0		ENST00000453838.2_1_1:182929095-182929497:-|nuORF	ENST00000453838.2_1_1:182929095-182929497:-|nuORF	ENST00000453838.2_1_1:182929095-182929497:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.771240234375	2	558.771331	1115.52811	-0.69423	-0.00038791	0.43465	0.00024287	-0.25958	-0.00014505	558.7714406211203	20.995	0.53127	20.904	20.675	21.207	-0.090094					25	10	3	0	0	0	0.45795	1	598	598		62.107	0.41614	1	309240			27859	14556	19196	19237	32170	32170					-0.025034125050297007
IQNETLLPK	9	Unmodified	_IQNETLLPK_					0	0	0			REV__ENST00000505151.5_1_5:180674073-180684306:+|nuORF	REV__ENST00000505151.5_1_5:180674073-180684306:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2745971679688	2	528.308406	1054.60226	-0.4631	-0.00024466	-1.6794	-0.00088724	-2.1425	-0.0011319	528.3075121824992	46.981	0.51537	47.041	46.803	47.319	0.059097					26	13	3	0	0	0	0.024283	1	4652	4652		56.434	8.7765	1	957690	+		27860	34003	19197	19238	32171	32171					0.07714298648784279
IQNGISNPQ	9	Unmodified	_IQNGISNPQ_					0	0	0			REV__nc|ENSG00000048991|Q15032|R3HDM1	REV__nc|ENSG00000048991|Q15032|R3HDM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.30804443359375	2	485.751256	969.487959	0.047059	2.2859E-05	-3.1628	-0.0015363	-3.1157	-0.0015135	485.7480556157795	20.519	0.24717	20.351	20.147	20.395	-0.16774					7	4	2	0	0	0	0.0242	1	563	563		51.193	1.7511	1	11440	+		27861	20143	19198	19239	32172	32172					0.0019940888671499124
IQNKDLQLN	9	Unmodified	_IQNKDLQLN_					0	0	0			REV__nc|ENSG00000187122|O75093-2|SLIT1	REV__nc|ENSG00000187122|O75093-2|SLIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7763671875	2	543.301113	1084.58767	-0.44429	-0.00024138	1.0392	0.0005646	0.59491	0.00032322	543.3012049832761	68.562	1.5849	68.269	67.466	69.051	-0.29266					48	40	2	0	0	0	0.017891	1	8077	8077		96.19	19.416	1	1320900	+		27862	27917	19199	19240	32173	32173					0.048762265006644157
IQNKFKNGML	10	Oxidation (M)	_IQNKFKNGM(Oxidation (M))L_		IQNKFKNGM(1)L		IQNKFKNGM(58)L	0	0	1		CON__P17690	CON__P17690	CON__P17690	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.55487060546875	3	403.553386	1207.63833	-0.011524	-4.6505E-06	3.6404	0.0014691	3.6289	0.0014644	403.55476099232806	22.42	0.93721	22.218	21.903	22.84	-0.20199					63	19	5	0	0	0	0.83673	1	766	766		58.23	10.27	1	1373800		+	27863	522	19200	19241	32174	32174		11			0.04281432554012099
IQNKLLANL	9	Unmodified	_IQNKLLANL_					0	0	0		nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825;nc|ENSG00000185261|Q8IV33-2|KIAA0825	nc|ENSG00000185261|Q8IV33-3|KIAA0825	nc|ENSG00000185261|Q8IV33-3|KIAA0825	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.80419921875	2	513.818941	1025.62333	-0.53583	-0.00027532	2.1084	0.0010833	1.5725	0.00080801	513.818854538194	68.877	0.41557	68.877	68.641	69.056	0					14	10	2	0	0	0	0.024477	1	8258	8258		27.882	0	1	72408			27864	9422	19201	19242	32175	32175					0.11154308748336916
IQNPSAAELV	10	Unmodified	_IQNPSAAELV_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000524474.5_1_11:720617-722550:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2823486328125	2	521.282389	1040.55022	-0.32384	-0.00016881	0.99133	0.00051676	0.66748	0.00034795	521.2828741398849	22.352	1.1196	22.167	21.618	22.738	-0.18539					56	23	4	0	0	0	0.91678	1	777	777		52.937	5.2794	1	986830			27865	8709	19202	19243	32176	32176					0.03157135235028363
IQNRAGVL	8	Unmodified	_IQNRAGVL_					0	0	0		nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2	nc|ENSG00000118777|Q9UNQ0-2|ABCG2	nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.7614440917969	2	435.761426	869.5083	-0.035416	-1.5433E-05	0.11924	5.1961E-05	0.083827	3.6528E-05	435.76133723869367	34.312	0.69539	34.312	34.05	34.746	0					40	17	4	0	0	0	0.75307	1	2553	2553		62.978	5.1671	1	1675500			27866	3704	19203	19244	32177	32177					0.0683262433717573
IQNRLPLP	8	Unmodified	_IQNRLPLP_					0	0	0		ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2815856933594	2	475.792727	949.5709	-0.45934	-0.00021855	-0.41453	-0.00019723	-0.87387	-0.00041578	475.7923690818469	34.809	0.27973	34.622	34.441	34.721	-0.18675					10	6	2	0	0	0	0.027866	1	2581	2581		8.2313	0	1	255120			27867	17232	19204	19245	32178	32178					0.09409770405375184
IQNRNSIL	8	Unmodified	_IQNRNSIL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2782287597656	2	479.277441	956.540328	0.97275	0.00046622	-0.30785	-0.00014754	0.6649	0.00031867	479.2772430798235	96.223	1.1864	96.225	95.653	96.84	0.0020752					68	27	4	0	0	0	1.043	1	12169	12169		30.504	1.3541	1	1858600	+		27868	21295	19205	19246	32179	32179					0.06031992020314192
IQNWHLPE	8	Unmodified	_IQNWHLPE_					0	0	0		ENSG00000162620|ENST00000354431|LRRIQ3;ENST00000463724.1_1_1:74648194-74648635:-|nuORF;nc|ENSG00000162620|A6PVS8-3|LRRIQ3;nc|ENSG00000162620|A6PVS8-2|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.78857421875	2	518.764166	1035.51378	-0.70012	-0.0003632	3.3136	0.001719	2.6135	0.0013558	518.7659111827005	53.632	0.29203	53.485	53.383	53.675	-0.14723					17	7	3	0	0	0	0.027866	1	5783	5783		29.15	11.785	1	294420			27869	6964	19206	19247	32180	32180					-0.002556968710223373
IQPEKSVSV	9	Unmodified	_IQPEKSVSV_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1;nc|ENSG00000101307|O00241-2|SIRPB1;ENST00000565775.1_1_20:1558831-1600590:-|nuORF;ENST00000453770.1_1_20:1514156-1534896:-|nuORF	ENSG00000101307|ENST00000381605|SIRPB1;ENST00000453770.1_1_20:1514156-1534896:-|nuORF	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2960510253906	2	493.779482	985.544411	-0.46327	-0.00022875	1.5318	0.00075635	1.0685	0.00052759	493.7799768747413	35.374	0.50353	35.187	34.948	35.452	-0.18675					23	12	2	0	0	0	0.024495	1	2665	2665		26.693	14.486	1	210830			27870	2308;14553	19207	19248	32181	32181					0.05106036723384477
IQPIQASEP	9	Unmodified	_IQPIQASEP_					0	0	0			REV__nc|ENSG00000124493|Q14833-5|GRM4	REV__nc|ENSG00000124493|Q14833-5|GRM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2835998535156	2	491.763832	981.513111	0.63536	0.00031245	-0.5621	-0.00027642	0.073258	3.6026E-05	491.7634105591666	58.655	0.40714	58.655	58.38	58.787	0					15	10	2	0	0	0	0.024427	1	6640	6640		42.396	11.892	1	162240	+		27871	36631	19208	19249	32182	32182					0.02161463689287757
IQPLLDMAAGI	11	Unmodified	_IQPLLDMAAGI_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.3148803710938	2	571.317917	1140.62128	0.16614	9.492E-05	-3.0804	-0.0017599	-2.9142	-0.001665	571.3160718919485	95.665	0.52428	95.528	95.243	95.767	-0.13689					18	11	2	0	0	0	0.87847	1	11807	11807		52.937	0	1	376450			27872	10490	19209	19250	32183	32183					0.05659511948215368
IQPLLDMAAGI	11	Unmodified	_IQPLLDMAAGI_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	571.317917	1140.62128	-0.98068	-0.00056028	-3.1632	-0.0018072	-4.1439	-0.0023675	571.3154971541335	95.813	0.59615	95.813	95.519	96.115	0	0.14958	0.00045873	NaN	52.937	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235410			27873	10490	19209	19250							0.05659511948215368
IQPLLDMAAGI	11	Unmodified	_IQPLLDMAAGI_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.317917	1140.62128	0.33016	0.00018863	-4.9172	-0.0028093	-4.587	-0.0026207	571.3144860698429	95.669	0.51289	95.672	95.431	95.944	0.0033722	0.0090176	-0.0015454	NaN	52.937	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274950			27874	10490	19209	19250							0.05659511948215368
IQPLLDMAAGI	11	Unmodified	_IQPLLDMAAGI_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	571.317917	1140.62128	0.00018542	1.0594E-07	-6.264	-0.0035787	-6.2638	-0.0035786	571.3136336454619	95.77	0.47024	95.772	95.524	95.994	0.0020752	0.10878	-0.0030843	NaN	52.937	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180890			27875	10490	19209	19250							0.05659511948215368
IQPLLDMAAGI	11	Unmodified	_IQPLLDMAAGI_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	571.317917	1140.62128	0.76773	0.00043862	-3.6996	-0.0021137	-2.9319	-0.001675	571.3157585900013	95.654	0.39406	95.531	95.334	95.728	-0.12251	-0.13203	-0.00015416	NaN	52.937	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173210			27876	10490	19209	19250							0.05659511948215368
IQPPIPTGL	9	Unmodified	_IQPPIPTGL_					0	0	0			REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.28155517578125	2	468.28166	934.548768	-0.40387	-0.00018912	0.13394	6.2721E-05	-0.26993	-0.0001264	468.2815746059036	45.24	0.83235	45.141	44.906	45.738	-0.099445					58	23	4	0	0	0	0.11092	1	4273	4273		108.09	6.4868	1	4780600	+		27877	36836	19210	19251	32184	32184					0.07887545936932838
IQPPIPTGL	9	Unmodified	_IQPPIPTGL_					0	0	0			REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.28155517578125	2	468.28166	934.548768	-0.71845	-0.00033644	0.8137	0.00038104	0.095247	4.4602E-05	468.2817196722353	45.38	1.0857	45.169	44.95	46.035	-0.21109					71	30	4	0	0	0	0.31247	1	4302	4302		73.975	13.003	1	5079500	+		27878	36836	19210	19251	32185	32185					0.07887545936932838
IQPQALREG	9	Unmodified	_IQPQALREG_					0	0	0			REV__nc|ENSG00000065361|P21860-4|ERBB3	REV__nc|ENSG00000065361|P21860-4|ERBB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7035217285156	2	506.282723	1010.55089	-0.48448	-0.00024528	3.0023	0.00152	2.5178	0.0012747	506.2843034532328	32.622	0.60339	32.464	32.204	32.807	-0.15772					23	14	2	0	0	0	0.024539	1	2218	2218		14.865	0	1	169920	+		27879	20309	19211	19252	32186	32186					0.046039746747510435
IQPRMLQR	8	Unmodified	_IQPRMLQR_					0	0	0		ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7536010742188	2	521.302936	1040.59132	-0.31328	-0.00016332	0.4097	0.00021358	0.096416	5.0262E-05	521.80540311441	22.339	0.18991	22.153	22	22.189	-0.18539					5	3	2	0	0	0	0.027866	1	755	755		25.45	1.2474	1	15615			27880	14014	19212	19253	32187	32187					0.07264617793521211
IQQANYVQL	9	Unmodified	_IQQANYVQL_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.7932739257812	2	538.790381	1075.56621	-0.8734	-0.00047058	0.24774	0.00013348	-0.62567	-0.0003371	538.7905007265798	51.209	0.71737	51.06	50.758	51.475	-0.14916					57	18	5	0	0	0	0.33245	1	5391	5391		71.296	4.8664	1	4230100	+		27881	22933	19213	19254	32188	32188					0.03144841471953441
IQQARDRLVAL	11	Unmodified	_IQQARDRLVAL_					0	0	0			REV__nc|ENSG00000136877|Q05932-3|FPGS	REV__nc|ENSG00000136877|Q05932-3|FPGS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.882568359375	2	641.883136	1281.75172	0.55581	0.00035677	-1.6557	-0.0010628	-1.0999	-0.00070601	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	0.96599	2	12218	12218;12281		44.377	11.565	1	3344500	+		27882	23698	19214	19255	32189;32190	32189					0.12211243991396259
IQQARDRLVAL	11	Unmodified	_IQQARDRLVAL_					0	0	0			REV__nc|ENSG00000136877|Q05932-3|FPGS	REV__nc|ENSG00000136877|Q05932-3|FPGS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8819580078125	2	641.883136	1281.75172	-0.57437	-0.00036868	-0.65226	-0.00041867	-1.2266	-0.00078735	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0075	1	11668	11668		35.152	1.2304	1	1351900	+		27883	23698	19214	19255	32191	32191					0.12211243991396259
IQQARDRLVAL	11	Unmodified	_IQQARDRLVAL_					0	0	0			REV__nc|ENSG00000136877|Q05932-3|FPGS	REV__nc|ENSG00000136877|Q05932-3|FPGS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8824462890625	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0292	1	11821	11821		30.318	0	1	3453200	+		27884	23698	19214	19255	32192	32192					0.12211243991396259
IQQFGAVFY	9	Unmodified	_IQQFGAVFY_					0	0	0			REV__ENST00000463518.5_3_3:160939120-160939198:+|nuORF	REV__ENST00000463518.5_3_3:160939120-160939198:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7072143554688	2	536.776742	1071.53893	-0.88589	-0.00047553	3.0632	0.0016443	2.1773	0.0011687	536.778662637276	57.345	0.5806	57.111	56.805	57.386	-0.23363					26	15	2	0	0	0	0.02309	1	6197	6197		79.939	0	1	236130	+		27885	30732	19215	19256	32193	32193					0.006023579315751704
IQQGFCFNI	9	Unmodified	_IQQGFCFNI_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7293090820312	2	535.260402	1068.50625	0.12805	6.8538E-05	-1.3122	-0.00070238	-1.1842	-0.00063385	535.2592581763812	59.462	0.90046	59.281	58.872	59.772	-0.18134					37	22	3	0	0	0	0.024381	1	6653	6653		21.96	7.095	1	233860			27886	9557	19216	19257	32194	32194					-0.02526172462944487
IQQIENLAC	9	Unmodified	_IQQIENLAC_					0	0	0		ENST00000584580.1_1_17:45912634-45914483:+|nuORF;ENSG00000141294|ENST00000269025|LRRC46	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.830810546875	2	516.263142	1030.51173	-0.75258	-0.00038853	-2.2201	-0.0011461	-2.9726	-0.0015347	516.262192077242	53.567	0.66391	53.431	53.057	53.721	-0.13617					39	18	3	0	0	0	0.023239	1	5645	5645		64.207	0.901	1	665210			27887	5480	19217	19258	32195	32195					-0.0023049367114253982
IQQIRHVVVF	10	Unmodified	_IQQIRHVVVF_					0	0	0			REV__ENST00000377238.2_1_10:20332341-20568745:+|nuORF	REV__ENST00000377238.2_1_10:20332341-20568745:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.869140625	2	619.87204	1237.72953	-0.98358	-0.0006097	-3.588	-0.0022241	-4.5716	-0.0028338	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	1.1237	1	11449	11449		23.042	1.0826	1	1625000	+		27888	22542	19218	19259	32196	32196					0.12017064313636183
IQQKPQILV	9	Unmodified	_IQQKPQILV_					0	0	0		ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7737426757812	2	533.834591	1065.65463	-0.43998	-0.00023488	-2.8064	-0.0014982	-3.2464	-0.001733	533.8331131020964	47.6	0.3211	47.502	47.384	47.705	-0.097553					13	8	2	0	0	0	0.024541	1	4654	4654		17.365	0	1	146400			27889	11336	19219	19260	32197	32197					0.12442881782408222
IQQLHLVAL	9	Unmodified	_IQQLHLVAL_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.8192138671875	2	517.821484	1033.62842	-1.1532	-0.00059714	-2.9121	-0.001508	-4.0653	-0.0021051	517.8198004944113	91.792	1.1119	91.792	91.425	92.537	0					81	26	5	0	0	0	0.85941	1	11639	11639		35.201	3.6709	1	1448700			27890	2838	19220	19261	32198	32198					0.1129461261095912
IQQLHLVAL	9	Unmodified	_IQQLHLVAL_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.8190307617188	2	517.821484	1033.62842	-0.030829	-1.5964E-05	-4.0444	-0.0020943	-4.0752	-0.0021102	517.8192656635947	91.828	1.1456	91.837	91.4	92.546	0.0094147					75	27	4	0	0	0	0.88411	1	11555	11555		33.516	1.5607	1	1415000			27891	2838	19220	19261	32199	32199					0.1129461261095912
IQQLQDMIT	9	Unmodified	_IQQLQDMIT_					0	0	0		ENST00000553956.6_1_17:62527116-62533894:+|nuORF;nc|ENSG00000258890|Q96GE4-2|CEP95;ENSG00000258890|ENST00000556440|CEP95	ENST00000553956.6_1_17:62527116-62533894:+|nuORF	ENST00000553956.6_1_17:62527116-62533894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7903442382812	2	545.284074	1088.5536	-0.39387	-0.00021477	0.27891	0.00015209	-0.11496	-6.2688E-05	545.2840940660659	49.609	0.40517	49.609	49.437	49.842	0					17	10	2	0	0	0	0.024477	1	5111	5111		20.947	5.3051	1	235780			27892	10931	19221	19262	32200	32200					0.012860620173796633
IQQNVIPPF	9	Unmodified	_IQQNVIPPF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENST00000402742.1_1_6:85997321-86000002:+|nuORF	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.74853515625	2	528.297842	1054.58113	0.49459	0.00026129	-1.5389	-0.00081302	-1.0444	-0.00055173	528.2967542200381	84.752	0.33469	84.594	84.364	84.698	-0.15869					12	7	2	0	0	0	0.024436	1	10267	10267		30.504	14.03	1	63781			27893	9548	19222	19263	32201	32201					0.056023333399252806
IQQNVIPPF	9	Unmodified	_IQQNVIPPF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENST00000402742.1_1_6:85997321-86000002:+|nuORF	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.297842	1054.58113	-0.15581	-8.2314E-05	-0.67868	-0.00035854	-0.83449	-0.00044086	528.2975535836233	84.771	0.61862	84.771	84.504	85.123	0	0.13087	-3.8158E-05	NaN	23.042	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583070			27894	9548	19222	19263							0.056023333399252806
IQQNVIPPF	9	Unmodified	_IQQNVIPPF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENST00000402742.1_1_6:85997321-86000002:+|nuORF	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.297842	1054.58113	-0.87577	-0.00046267	0.13387	7.0726E-05	-0.74189	-0.00039194	528.2979754101806	84.766	0.57919	84.693	84.427	85.007	-0.072769	0.052786	0.00082038	NaN	23.042	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430690			27895	9548	19222	19263							0.056023333399252806
IQQNVIPPF	9	Unmodified	_IQQNVIPPF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENST00000402742.1_1_6:85997321-86000002:+|nuORF	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.297842	1054.58113	-0.34325	-0.00018134	-1.0559	-0.00055781	-1.3991	-0.00073915	528.2975230369012	84.717	0.95399	84.742	84.456	85.41	0.025536	0.10195	-0.0004367	NaN	23.042	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453970			27896	9548	19222	19263							0.056023333399252806
IQQTGGLKKL	10	Unmodified	_IQQTGGLKKL_					0	0	0		nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3374633789062	2	543.337498	1084.66044	-0.98427	-0.00053479	0.18444	0.00010021	-0.79983	-0.00043458	543.3375877430747	48.614	1.6346	48.614	48.243	49.878	0					101	45	5	0	0	0	0.17599	1	4970	4970		124.08	5.337	1	9406200			27897	7397	19223	19264	32202	32202					0.12149980294088891
IQQTGGLKKL	10	Unmodified	_IQQTGGLKKL_					0	0	0		nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3372192382812	2	543.337498	1084.66044	-1.0451	-0.00056785	0.26609	0.00014458	-0.77902	-0.00042327	543.337595664727	48.761	1.5232	48.608	48.329	49.852	-0.15276					106	41	5	0	0	0	0.10407	1	4987	4987		134.77	8.523	1	8387100			27898	7397	19223	19264	32203	32203					0.12149980294088891
IQRALEGR	8	Unmodified	_IQRALEGR_					0	0	0			REV__ENSG00000162878|ENST00000294964|PKDCC	REV__ENSG00000162878|ENST00000294964|PKDCC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7774963378906	2	471.777608	941.540663	-0.13697	-6.4618E-05	0.82824	0.00039075	0.69128	0.00032613	471.7779114719396	29.016	0.57261	29.019	28.631	29.204	0.0031376					41	13	4	0	0	0	0.74904	1	1731	1731		63.306	3.0123	1	2426600	+		27899	25501	19224	19265	32204	32204					0.06755411740186901
IQRALKLAE	9	Unmodified	_IQRALKLAE_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.314453125	2	521.324391	1040.63423	-0.33618	-0.00017526	0.041697	2.1738E-05	-0.29448	-0.00015352	521.3242289014389	45.664	0.70366	45.568	45.257	45.961	-0.096649					43	19	4	0	0	0	0.024344	1	4397	4397		45.972	3.5761	1	1841300	+		27900	23829	19225	19266	32205	32205					0.11553711122587629
IQRALKLAE	9	Unmodified	_IQRALKLAE_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.324391	1040.63423	-0.7405	-0.00038604	1.2551	0.00065429	0.51455	0.00026825	521.3248675372056	45.583	0.67024	45.583	45.147	45.818	0	0.018282	0.00086712	NaN	37.812	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407100	+		27901	23829	19225	19266							0.11553711122587629
IQRALKLAE	9	Unmodified	_IQRALKLAE_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.324391	1040.63423	-0.76664	-0.00039967	1.6844	0.00087814	0.9178	0.00047847	521.3249837919597	45.681	0.6109	45.529	45.178	45.789	-0.15157	-0.03541	0.0013148	NaN	37.812	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457520	+		27902	23829	19225	19266							0.11553711122587629
IQRALKLAE	9	Unmodified	_IQRALKLAE_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.324391	1040.63423	-0.38105	-0.00019865	1.3191	0.00068767	0.93803	0.00048902	521.3248575215374	45.586	0.67854	45.63	45.279	45.958	0.043877	0.065401	0.00093388	NaN	37.812	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384740	+		27903	23829	19225	19266							0.11553711122587629
IQRALQYPT	9	Unmodified	_IQRALQYPT_					0	0	0			REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF	REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2581787109375	2	545.306198	1088.59784	-1.0717	-0.0005844	4.3449	0.0023693	3.2732	0.0017849	545.308422829201	61.056	0.57175	60.88	60.674	61.246	-0.1761					30	13	3	0	0	0	0.024294	1	6799	6799		15.642	0	1	270960	+		27904	24237	19226	19267	32206	32206					0.057088342259021374
IQRDLDSI	8	Unmodified	_IQRDLDSI_					0	0	0			REV__ENST00000567642.1_1_16:30087698-30092679:+|nuORF	REV__ENST00000567642.1_1_16:30087698-30092679:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.275146484375	2	480.261456	958.50836	-0.78651	-0.00037773	-0.10673	-5.126E-05	-0.89325	-0.00042899	480.26134925991727	43.976	0.52947	43.831	43.569	44.099	-0.14471					25	14	2	0	0	0	0.027866	1	4156	4156		16.473	0	1	1166800	+		27905	24704	19227	19268	32207	32207					0.027445795465155243
IQRERRRKELF	11	Unmodified	_IQRERRRKELF_					0	0	0		ENSG00000119509|ENST00000262457|INVS;nc|ENSG00000119509|Q9Y283-2|INVS	ENSG00000119509|ENST00000262457|INVS	ENSG00000119509|ENST00000262457|INVS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7641906738281	3	510.970702	1529.89028	-1.0538	-0.00053848	0.49538	0.00025313	-0.55845	-0.00028535	510.9708594499275	25.873	0.29728	25.71	25.5	25.798	-0.16331					14	6	3	0	0	0	0.024851	1	1229	1229		15.921	0	1	91862			27906	3741	19228	19269	32208	32208					0.14652786959732111
IQRGVQKLV	9	Unmodified	_IQRGVQKLV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2446899414062	2	520.832383	1039.65021	-0.20154	-0.00010497	-4.2971	-0.0022381	-4.4987	-0.0023431	520.830463535904	50.554	0.46356	50.405	50.193	50.657	-0.14916					19	13	2	0	0	0	0.024381	1	5303	5303		29.15	2.4566	1	229120			27907	7968	19229	19270	32209	32209					0.13197417359492647
IQRIPAPT	8	Unmodified	_IQRIPAPT_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2901611328125	2	448.271627	894.528701	0.012568	5.6339E-06	0.39499	0.00017706	0.40756	0.0001827	448.27196196201766	52.986	0.30323	52.838	52.645	52.948	-0.14723					9	7	2	0	0	0	0.027866	1	5687	5687		53.351	33.355	1	53720	+		27908	20912	19230	19271	32210	32210					0.07721794996984954
IQRITCPN	8	Unmodified	_IQRITCPN_					0	0	0		ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-3|IL1RAP;IL1RAP|p.H379Qfs*19|1|0.28|ENSG00000196083|chr3:190644331-190644332|-/A|frameshift_variant;nc|ENSG00000196083|Q9NPH3-5|IL1RAP;nc|ENSG00000196083|Q9NPH3-2|IL1RAP	ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-2|IL1RAP	ENSG00000196083|ENST00000447382|IL1RAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.75341796875	2	472.752744	943.490935	-0.39794	-0.00018813	2.1172	0.0010009	1.7193	0.0008128	472.7538756619408	39.8	1.1404	39.823	39.455	40.596	0.023727					86	31	4	0	0	0	0.83003	1	3421	3421		56.721	1.2168	1	14108000			27909	9817;18616	19231	19272	32211	32211					0.016929607398537883
IQRKHGKT	8	Unmodified	_IQRKHGKT_					0	0	0		ENST00000375173.1_1_9:100364558-100364741:-|nuORF	ENST00000375173.1_1_9:100364558-100364741:-|nuORF	ENST00000375173.1_1_9:100364558-100364741:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2751159667969	2	484.293425	966.572297	-0.47136	-0.00022827	0.10959	5.3073E-05	-0.36177	-0.0001752	484.29348525422074	34.449	0.24439	34.274	34.089	34.334	-0.17557					9	5	2	0	0	0	0.027866	1	2512	2512		16.473	0.83134	1	58316			27910	13152	19232	19273	32212	32212					0.08767404494130915
IQRKQDEL	8	Unmodified	_IQRKQDEL_					0	0	0			REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2876586914062	2	515.288005	1028.56146	2.061	0.001062	-1.879	-0.00096822	0.18203	9.3796E-05	515.2871704612409	24.664	0.74142	24.483	24.114	24.855	-0.18089					35	16	3	0	0	0	0.6248	1	1067	1067		73.975	0	1	1281000	+		27911	36891	19233	19274	32213	32213					0.04831957329179204
IQRLLTNL	8	Unmodified	_IQRLLTNL_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000471314.1_1_9:100116971-100120019:+|nuORF;ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7677917480469	2	485.805834	969.597115	-0.024834	-1.2064E-05	-0.83499	-0.00040564	-0.85982	-0.00041771	485.8055438683375	46.753	0.19536	46.753	46.696	46.892	0					5	4	2	0	0	0	0.027866	1	4661	4661		56.721	0	1	458260			27912	13153;10050	19234	19275	32214	32214					0.11110039576828967
IQRQAGSEP	9	Unmodified	_IQRQAGSEP_					0	0	0		ENSG00000205097|ENST00000504750|FRG2	ENSG00000205097|ENST00000504750|FRG2	ENSG00000205097|ENST00000504750|FRG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.30322265625	2	493.256705	984.498858	-0.3496	-0.00017244	-0.045732	-2.2558E-05	-0.39534	-0.000195	493.2565628319677	31.504	0.77382	31.504	31.216	31.989	0					41	18	3	0	0	0	0.024427	1	2161	2161		26.693	0	1	832900			27913	10404	19235	19276	32215	32215					0.0059881126099980975
IQRTILMMG	9	Oxidation (M)	_IQRTILMM(Oxidation (M))G_		IQRTILM(0.079)M(0.921)G		IQRTILM(-11)M(11)G	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.791015625	2	539.791012	1077.56747	0.1911	0.00010316	-1.0603	-0.00057236	-0.86923	-0.0004692	539.7904852482321	65.88	0.57912	65.88	65.605	66.184	0					28	14	2	0	0	0	0.27161	3	7811	7811;7823;7838		79.451	16.473	2	7576500			27914	7717	19236	19277	32216;32217;32218	32216		317			0.031790162448487536
IQRTILMMG	9	Oxidation (M)	_IQRTILMM(Oxidation (M))G_		IQRTILM(0.061)M(0.939)G		IQRTILM(-12)M(12)G	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7909545898438	2	539.791012	1077.56747	-0.64873	-0.00035018	-1.0081	-0.00054416	-1.6568	-0.00089434	539.7910349261623	66.208	0.79122	65.927	65.421	66.213	-0.28148					70	20	5	0	0	0	0.11092	3	7841	7829;7841;7856		108.09	24.8	2	8542200			27915	7717	19236	19277	32219;32220;32221	32220		317			0.031790162448487536
IQRTILMMG	9	Oxidation (M)	_IQRTILMM(Oxidation (M))G_		IQRTILM(0.061)M(0.939)G		IQRTILM(-12)M(12)G	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7908935546875	2	539.791012	1077.56747	-0.77958	-0.00042081	-0.0024627	-1.3293E-06	-0.78204	-0.00042214	539.7910619150618	65.901	0.60562	65.931	65.661	66.267	0.030098					44	15	4	0	0	0	0.11092	2	7742	7742;7777		108.09	17.718	2	7164800			27916	7717	19236	19277	32222;32223	32222		317			0.031790162448487536
IQRVLVSADV	10	Unmodified	_IQRVLVSADV_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400-SFSWAP|1|fusion;REV__nc|ENSG00000185684|Q6ZTU2-2|EP400P1	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.288818359375	2	550.327131	1098.63971	-0.077061	-4.2409E-05	-0.17103	-9.4125E-05	-0.2481	-0.00013653	550.327012836967	48.37	0.39051	48.183	47.978	48.368	-0.18684					21	10	3	0	0	0	0.03519	1	4757	4757		14.137	0	1	272020	+		27917	27576;35996;37017	19237	19278	32224	32224					0.09433389914420331
IQSGISIMTC	10	Oxidation (M)	_IQSGISIM(Oxidation (M))TC_		IQSGISIM(1)TC		IQSGISIM(67)TC	0	0	1		ENST00000582081.5_1_17:62590121-62594530:-|nuORF	ENST00000582081.5_1_17:62590121-62594530:-|nuORF	ENST00000582081.5_1_17:62590121-62594530:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.7590942382812	2	534.756835	1067.49912	-0.86655	-0.00046339	3.9572	0.0021161	3.0906	0.0016527	534.7595155979491	72.887	0.62816	72.689	72.371	72.999	-0.19811					32	14	3	0	0	0	0.69662	1	8548	8548		67.494	7.1997	1	1566900			27918	17172	19238	19279	32225	32225		548			-0.0319327312565747
IQSGVLTQ	8	Unmodified	_IQSGVLTQ_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.51324462890625	2	423.239993	844.465432	-0.62238	-0.00026342	0.13815	5.8471E-05	-0.48423	-0.00020495	423.2395903758066	32.03	0.82111	32.03	31.71	32.531	0					46	20	4	0	0	0	0.027866	1	2159	2159		8.2351	0	1	177520			27919	7061	19239	19280	32226	32226					0.036978094890741886
IQSLIEESEEL	11	Unmodified	_IQSLIEESEEL_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	645.3265991210938	2	645.32719	1288.63983	-0.63917	-0.00041247	-0.37299	-0.0002407	-1.0122	-0.00065317	645.3268257192728	61.562	1.3051	61.384	61.078	62.383	-0.17782					87	32	4	0	0	0	1.0017	1	6913	6913		36.447	0.12911	1	1566700			27920	2343	19240	19281	32227	32227					0.007053003331066066
IQSLQQEHA	9	Unmodified	_IQSLQQEHA_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22;ENST00000487090.1_1_22:20810643-20819754:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7379150390625	2	527.269813	1052.52507	0.057288	3.0206E-05	-1.0331	-0.0005447	-0.97577	-0.00051449	527.2691235213255	53.289	0.56717	53.031	52.803	53.37	-0.25838					23	14	2	0	0	0	0.024354	1	5565	5565		38.806	0	1	338130			27921	2096	19241	19282	32228	32228					0.0009108043248033937
IQSLTWSRSG	10	Unmodified	_IQSLTWSRSG_					0	0	0		ENST00000367139.7_1_1:205744106-205744529:-|nuORF;ENST00000414729.1_1_1:205744259-205744529:-|nuORF;ENST00000468887.1_1_1:205739472-205744529:-|nuORF	ENST00000367139.7_1_1:205744106-205744529:-|nuORF	ENST00000367139.7_1_1:205744106-205744529:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.7996826171875	2	567.798737	1133.58292	0.68226	0.00038739	3.2478	0.0018441	3.9301	0.0022315	567.8004850111521	71.21	0.63002	71.004	70.79	71.42	-0.20613					35	14	3	0	0	0	0.26927	1	8309	8309		112.41	8.3541	1	1584700			27922	12843	19242	19283	32229	32229					0.02147342357875459
IQSPSSHSR	9	Unmodified	_IQSPSSHSR_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2083435058594	2	499.75433	997.494107	-0.44474	-0.00022226	-1.4913	-0.00074527	-1.936	-0.00096754	499.75273278654817	41.872	0.6515	41.641	41.313	41.965	-0.2303					37	17	4	0	0	0	0.024367	1	3757	3757		29.17	1.2878	1	457160	+		27923	26779	19243	19284	32230	32230					-0.004740728817637319
IQTAVRLLL	9	Unmodified	_IQTAVRLLL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000146047|ENST00000274764|H2BC1;HIST1H2BJ|p.P104S|1|0.33|ENSG00000124635|chr6:27132441-27132441|G/A|missense_variant	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8370361328125	2	513.837134	1025.65972	-0.30129	-0.00015481	-0.23322	-0.00011984	-0.5345	-0.00027465	513.8370196881182	68.327	1.887	68.327	67.987	69.874	0					127	48	5	0	0	0	0.016758	2	8188	8188;8200		153.04	36.132	1	18873000			27924	4066	19244	19285	32231;32232	32231					0.14791185645049154
IQTAVRLLL	9	Unmodified	_IQTAVRLLL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000146047|ENST00000274764|H2BC1;HIST1H2BJ|p.P104S|1|0.33|ENSG00000124635|chr6:27132441-27132441|G/A|missense_variant	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.837158203125	2	513.837134	1025.65972	0.13123	6.7431E-05	-0.41111	-0.00021124	-0.27988	-0.00014381	513.8369002543633	68.639	1.9083	68.346	68.052	69.961	-0.29267					130	48	5	0	0	0	0.03849	2	8226	8213;8226		134.81	38.62	1	9284900			27925	4066	19244	19285	32233;32234	32234					0.14791185645049154
IQTAVRLLL	9	Unmodified	_IQTAVRLLL_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000146047|ENST00000274764|H2BC1;HIST1H2BJ|p.P104S|1|0.33|ENSG00000124635|chr6:27132441-27132441|G/A|missense_variant	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.83740234375	2	513.837134	1025.65972	-0.069065	-3.5488E-05	-0.29103	-0.00014954	-0.36009	-0.00018503	513.8369786725906	68.39	1.8382	68.409	68.08	69.918	0.018921					132	47	4	0	0	0	0.03201	2	8135	8117;8135		139.97	35.224	1	20621000			27926	4066	19244	19285	32235;32236	32236					0.14791185645049154
IQTEDLLN	8	Unmodified	_IQTEDLLN_					0	0	0			REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	REV__ENST00000477693.1_1_2:122488402-122494426:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7753601074219	2	473.248015	944.481476	0.82278	0.00038938	-0.39837	-0.00018853	0.42441	0.00020085	473.24771169929744	36.107	1.1427	35.908	35.674	36.817	-0.19829					58	29	4	0	0	0	0.027866	1	2922	2922		30.504	0	1	809220	+		27927	25006	19245	19286	32237	32237					0.007014709353370563
IQTNRYTV	8	Unmodified	_IQTNRYTV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7874755859375	2	497.769448	993.524344	0.27045	0.00013462	-0.76298	-0.00037979	-0.49253	-0.00024517	497.7690963114685	57.385	0.4789	57.211	56.866	57.345	-0.1749					21	12	2	0	0	0	0.027866	1	6365	6365		31.955	0	1	152990			27928	6083	19246	19287	32238	32238					0.02732285783417865
IQTQRWGHG	9	Unmodified	_IQTQRWGHG_					0	0	0			REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7803344726562	2	541.778139	1081.54173	-1.2584	-0.00068175	-2.1038	-0.0011398	-3.3622	-0.0018216	541.7762616619773	28.294	0.28305	28.142	28	28.283	-0.15195					11	6	2	0	0	0	0.024466	1	1608	1608		33.516	20.556	1	83313	+		27929	36909	19247	19288	32239	32239					0.004216261090959961
IQVATQISL	9	Unmodified	_IQVATQISL_					0	0	0		TMEM67|p.R463Q|1|0.55|ENSG00000164953|chr8:93786322-93786322|G/A|missense_variant	TMEM67|p.R463Q|1|0.55|ENSG00000164953|chr8:93786322-93786322|G/A|missense_variant	TMEM67|p.R463Q|1|0.55|ENSG00000164953|chr8:93786322-93786322|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2589111328125	2	486.78985	971.565146	-1.398	-0.00068055	-0.40615	-0.00019771	-1.8042	-0.00087826	486.789346027137	51.27	0.32177	51.357	51.189	51.511	0.087006					12	8	2	0	0	0	0.024319	1	5366	5366		56.721	26.88	1	605310			27930	38088	19248	19289	32240	32240					0.07822627103041668
IQVGHPAK	8	Unmodified	_IQVGHPAK_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.2632141113281	2	425.250695	848.486836	-1.7613	-0.00074899	2.0648	0.00087806	0.30353	0.00012907	425.25166740077907	37.976	0.46422	37.976	37.702	38.166	0					19	13	3	0	0	0	0.027866	1	3156	3156		23.042	0	1	113110			27931	4381	19249	19290	32241	32241					0.05653239308469438
IQVKGIVKN	9	Unmodified	_IQVKGIVKN_					0	0	0			REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	REV__nc|ENSG00000147548|Q9BZ95-4|NSD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27685546875	2	499.821484	997.628415	-0.22787	-0.0001139	-1.3031	-0.00065132	-1.531	-0.00076522	499.82182023000945	61.233	0.55527	61.019	60.756	61.311	-0.21339					25	14	2	0	0	0	0.024436	1	7048	7048		23.042	8.1776	1	761160	+		27932	24563	19250	19291	32242	32242					0.1295061261093906
IQVLAPPL	8	Unmodified	_IQVLAPPL_					0	0	0		ENST00000308018.8_1_19:39423336-39423570:+|nuORF	ENST00000308018.8_1_19:39423336-39423570:+|nuORF	ENST00000308018.8_1_19:39423336-39423570:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.7609558105469	2	425.773471	849.53239	1.5018	0.00063944	-2.6257	-0.0011179	-1.1238	-0.0004785	425.77234454103564	59.306	0.21643	59.11	59.033	59.249	-0.19605					8	5	2	0	0	0	0.027866	1	6743	6743		26.796	0	1	71472			27933	12017	19251	19292	32243	32243					0.10160464770854105
IQVQQPQQV	9	Unmodified	_IQVQQPQQV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3311157226562	2	534.29583	1066.57711	-1.5833	-0.00084597	1.3591	0.00072614	-0.22427	-0.00011982	534.2963660791468	44.357	0.85123	44.212	43.883	44.734	-0.14471					65	24	4	0	0	0	0.024381	1	4208	4208		29.15	0	1	1550500			27934	10109	19252	19293	32244	32244					0.04648243846236255
IQVRKGVYPGG	11	Unmodified	_IQVRKGVYPGG_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	587.2955322265625	2	587.340572	1172.66659	0.28214	0.00016571	1.3285	0.00078029	1.6107	0.000946	587.3406980807889	74.02	0.17026	74.03	73.924	74.095	0.0096512					5	3	2	0	0	0	0.024727	1	8975	8975		39.253	13.803	1	115930	+		27935	22434	19253	19294	32245	32245					0.08716498525586758
IQVSAALFTLY	11	Unmodified	_IQVSAALFTLY_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.2904052734375	2	613.344989	1224.67542	-1.277	-0.00078327	-1.0006	-0.0006137	-2.2776	-0.001397	613.3445155805756	60.774	0.31022	60.598	60.483	60.793	-0.1761					11	7	2	0	0	0	0.024205	1	6772	6772		85.161	18.732	1	81034			27936	3969	19254	19295	32246	32246					0.07207427371417907
IQVSYRAF	8	Unmodified	_IQVSYRAF_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.3033752441406	2	492.269084	982.523616	-0.3983	-0.00019607	-3.6361	-0.00179	-4.0344	-0.001986	492.2670268573576	31.147	1.1393	31.216	30.87	32.009	0.06896					36	27	2	0	0	0	0.027866	1	2094	2094		17.365	0	1	137750	+		27937	24548	19255	19296	32247	32247					0.03165491134370768
IQVTVGSAKY	10	Unmodified	_IQVTVGSAKY_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2973022460938	2	533.300581	1064.58661	-0.31539	-0.0001682	-0.12404	-6.6149E-05	-0.43943	-0.00023435	533.3003683392849	61.291	0.78196	61.085	60.849	61.631	-0.20599					45	18	4	0	0	0	0.67616	1	6858	6858		68.846	2.4169	1	1578100			27938	1390	19256	19297	32248	32248					0.05690012131753974
IQVTVTGPS	9	Unmodified	_IQVTVTGPS_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2773132324219	2	451.2531	900.491647	-0.091608	-4.1338E-05	0.52346	0.00023621	0.43186	0.00019488	451.25318227853217	67.294	0.92999	67.006	66.581	67.511	-0.28834					45	22	4	0	0	0	0.024209	1	7995	7995		47.657	0	1	898290			27939	231	19257	19298	32249	32249					0.037420786605594
IQVVRYRRNVK	11	Unmodified	_IQVVRYRRNVK_					0	0	0		SPANXB1|p.L57Q|1|0.15|ENSG00000227234|chrX:141003510-141003510|T/A|missense_variant	SPANXB1|p.L57Q|1|0.15|ENSG00000227234|chrX:141003510-141003510|T/A|missense_variant	SPANXB1|p.L57Q|1|0.15|ENSG00000227234|chrX:141003510-141003510|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.7580261230469	3	477.628276	1429.863	0.48193	0.00023018	-2.6051	-0.0012443	-2.1232	-0.0010141	477.6269208043038	104.52	0.46764	104.36	104.08	104.55	-0.16791					22	12	2	0	0	0	0.024834	1	12971	12971		5.4129	0	1	104020			27940	37955	19258	19299	32250	32250					0.16526303419345822
IQWKLVNI	8	Unmodified	_IQWKLVNI_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|61|2|anti-sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|61|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.30450439453125	2	507.310752	1012.60695	-0.082506	-4.1856E-05	-3.8781	-0.0019674	-3.9606	-0.0020092	507.3088009710188	41.465	1.2094	41.342	41.016	42.225	-0.12318					70	34	3	0	0	0	0.78609	1	3718	3718		60.294	3.8602	1	6348400	+		27941	36101	19259	19300	32251	32251					0.10115227582218722
IQWLPANL	8	Unmodified	_IQWLPANL_					0	0	0			REV__ENSG00000169914|ENST00000375120|OTUD3	REV__ENSG00000169914|ENST00000375120|OTUD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.776611328125	2	477.774003	953.533452	-0.31814	-0.000152	0.26626	0.00012721	-0.051879	-2.4786E-05	477.77405798356966	69.467	0.83634	69.2	68.784	69.62	-0.26725					43	19	3	0	0	0	0.027866	1	8001	8001		25.45	1.2474	1	1018200	+		27942	26416	19260	19301	32252	32252					0.054826791397545094
IQWPAIYTL	9	Unmodified	_IQWPAIYTL_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7861328125	2	552.808042	1103.60153	-0.89246	-0.00049336	-2.9881	-0.0016518	-3.8805	-0.0021452	552.8064463417912	55.833	1.0046	55.676	55.211	56.215	-0.15656					49	26	3	0	0	0	0.024405	1	6030	6030		20.947	6.0821	1	968930	+		27943	28270	19261	19302	32253	32253					0.05387503999736509
IQWSIVPEV	9	Unmodified	_IQWSIVPEV_					0	0	0		ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7982788085938	2	535.797675	1069.5808	0.11248	6.0265E-05	0.021606	1.1576E-05	0.13408	7.1842E-05	535.7975379391108	89.057	2.0047	89.035	88.266	90.271	-0.021645					90	47	4	0	0	0	0.32811	1	11203	11203		71.877	0	1	2767100			27944	1549	19262	19303	32254	32254					0.04878913620086678
IQYCFAAR	8	Unmodified	_IQYCFAAR_					0	0	0			REV__ENST00000479115.5_1_3:49723420-49723642:-|nuORF	REV__ENST00000479115.5_1_3:49723420-49723642:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2919921875	2	486.242012	970.469472	0.428	0.00020811	-1.0243	-0.00049808	-0.59635	-0.00028997	486.2417604302991	82.092	0.16233	81.982	81.881	82.043	-0.11006					5	3	2	0	0	0	0.027866	1	10215	10215		35.201	3.6218	1	101740	+		27945	26780	19263	19304	32255	32255					-0.01694424288848495
IQYLEKRHY	9	Unmodified	_IQYLEKRHY_					0	0	0		ENST00000494957.5_1_X:134713813-134716222:+|nuORF	ENST00000494957.5_1_X:134713813-134716222:+|nuORF	ENST00000494957.5_1_X:134713813-134716222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.5576477050781	3	417.227779	1248.66151	-0.91315	-0.00038099	-0.9516	-0.00039704	-1.8648	-0.00077803	417.2275421802056	24.594	0.62465	24.547	24.044	24.669	-0.047146					15	13	2	0	0	0	0.024541	1	1066	1066		22.58	6.5729	1	96859			27946	15538	19264	19305	32256	32256					0.0471219466301136
IQYLEKRHY	9	Unmodified	_IQYLEKRHY_					0	0	0		ENST00000494957.5_1_X:134713813-134716222:+|nuORF	ENST00000494957.5_1_X:134713813-134716222:+|nuORF	ENST00000494957.5_1_X:134713813-134716222:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	417.227779	1248.66151	1.5592	0.00065056	-4.7543	-0.0019836	-3.1951	-0.0013331	417.2257927418941	24.982	0.52095	24.81	24.513	25.034	-0.17151	0.05982	-0.0015276	NaN	11.636	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388080			27947	15538	19264	19305							0.0471219466301136
IQYVLKEQN	9	Unmodified	_IQYVLKEQN_					0	0	0			REV__ENSG00000132664|ENST00000377603|POLR3F	REV__ENSG00000132664|ENST00000377603|POLR3F	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3088989257812	2	567.811313	1133.60807	0.3344	0.00018988	-1.4225	-0.00080772	-1.0881	-0.00061784	567.8103965361772	69.529	1.6331	69.236	68.405	70.038	-0.29292					131	41	6	0	0	0	0.082191	1	8394	8394		116.9	15.651	1	12873000	+		27948	23304	19265	19306	32257	32257					0.04661397160475644
IRAAKGIH	8	Unmodified	_IRAAKGIH_					0	0	0		SCN10A|p.R1594H|1|0.1|ENSG00000185313|chr3:38698439-38698439|C/T|missense_variant	SCN10A|p.R1594H|1|0.1|ENSG00000185313|chr3:38698439-38698439|C/T|missense_variant	SCN10A|p.R1594H|1|0.1|ENSG00000185313|chr3:38698439-38698439|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2554931640625	2	433.271961	864.52937	0.54644	0.00023676	-2.792	-0.0012097	-2.2456	-0.00097294	433.271118948039	102.97	0.49091	102.97	102.86	103.36	-0.0046082					14	11	2	0	0	0	0.027866	1	13144	13144		35.201	5.3592	1	372020			27949	37859	19266	19307	32258	32258					0.09168634436707634
IRAALTKTDN	10	Unmodified	_IRAALTKTDN_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.7796020507812	2	551.814387	1101.61422	-0.21076	-0.0001163	3.7083	0.0020463	3.4975	0.00193	551.8158823998693	45.873	0.69946	45.612	45.383	46.083	-0.26118					28	18	2	0	0	0	0.03519	1	4332	4332		30.318	6.115	1	436900	+		27950	28058	19267	19308	32259	32259					0.06747915391997594
IRACPRMV	8	Unmodified	_IRACPRMV_					0	0	0			REV__ENST00000427908.6_1_5:176737530-176738842:-|nuORF	REV__ENST00000427908.6_1_5:176737530-176738842:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.76171875	2	473.259682	944.504811	-0.15244	-7.2143E-05	-3.4678	-0.0016412	-3.6202	-0.0017133	473.2577207286127	32.819	0.22673	32.826	32.701	32.928	0.0066223					13	5	3	0	0	0	0.027866	1	2278	2278		26.796	0	1	303730	+		27951	32308	19268	19309	32260	32260					0.030339149673181964
IRAEDFGVL	9	Unmodified	_IRAEDFGVL_					0	0	0		nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.30572509765625	2	510.279649	1018.54475	-0.061486	-3.1375E-05	3.5545	0.0018138	3.4931	0.0017824	510.7827350781177	22.312	0.42761	22.11	21.903	22.33	-0.20198					20	8	4	0	0	0	0.024523	1	738	738		29.15	3.6994	1	65124			27952	8002	19269	19310	32261	32261					0.03621456443238458
IRAELERQN	9	Unmodified	_IRAELERQN_					0	0	0		CON__Q14532	CON__Q14532	CON__Q14532	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.8110961914062	2	564.809636	1127.60472	0.60499	0.0003417	1.6225	0.0009164	2.2275	0.0012581	564.8104336485193	107.05	0.6187	107.05	106.81	107.43	0					38	16	3	0	0	0	0.85329	1	13755	13755		35.618	1.4457	1	140810		+	27953	538	19270	19311	32262	32262					0.046021471064932484
IRAGRKNAAPL	11	Unmodified	_IRAGRKNAAPL_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.8587646484375	2	583.859464	1165.70437	-0.716	-0.00041804	-0.29707	-0.00017345	-1.0131	-0.00059149	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	1.0442	1	11986	11986		26.693	1.2427	1	1429300			27954	10358	19271	19312	32263	32263					0.1281500951106409
IRALAAQLQ	9	Unmodified	_IRALAAQLQ_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.3034973144531	2	492.303458	982.592364	-0.33989	-0.00016733	-0.25456	-0.00012532	-0.59445	-0.00029265	492.303312186933	31.816	0.67619	31.828	31.545	32.221	0.011799					40	16	3	0	0	0	0.35646	1	2143	2143		68.787	5.4806	1	4103800	+		27955	24816	19272	19313	32264	32264					0.10037155434076794
IRALAAQLQ	9	Unmodified	_IRALAAQLQ_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.3033752441406	2	492.303458	982.592364	-0.45842	-0.00022568	-0.13406	-6.5999E-05	-0.59248	-0.00029168	492.3033478430486	31.622	0.80271	31.691	31.366	32.169	0.068962					46	19	3	0	0	0	0.39228	1	2094	2094		66.429	7.6473	1	3965000	+		27956	24816	19272	19313	32265	32265					0.10037155434076794
IRAMYCHIL	9	Unmodified	_IRAMYCHIL_					0	0	0			REV__ENST00000496139.5_1_22:47158670-47188605:+|nuORF	REV__ENST00000496139.5_1_22:47158670-47188605:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.295654296875	2	560.293722	1118.57289	0.44887	0.0002515	2.6077	0.0014611	3.0565	0.0017126	560.2947747730213	72.498	0.73427	72.508	72.21	72.944	0.0097733					57	17	5	0	0	0	0.64155	1	8752	8752		50.025	2.3672	1	2048300	+		27957	33818	19273	19314	32266	32266					0.018347398273135695
IRAVDHAVI	9	Unmodified	_IRAVDHAVI_					0	0	0		ENST00000545960.5_1_11:115040311-115061650:-|nuORF;ENST00000546000.1_1_11:115047196-115049577:-|nuORF;ENST00000537140.5_1_11:115040311-115375169:-|nuORF;nc|ENSG00000182985|Q9BY67-5|CADM1;nc|ENSG00000182985|Q9BY67|CADM1;nc|ENSG00000182985|Q9BY67-4|CADM1;ENSG00000182985|ENST00000331581|CADM1	ENST00000545960.5_1_11:115040311-115061650:-|nuORF	ENST00000545960.5_1_11:115040311-115061650:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.29620361328125	2	497.295633	992.576714	0.97144	0.00048309	3.5699	0.0017753	4.5413	0.0022584	497.2971402708592	70.396	0.86014	70.396	70.166	71.026	0					48	21	3	0	0	0	0.4752	1	8514	8514		60.972	0.67798	1	655490			27958	9185	19274	19315	32267	32267					0.0801286891704649
IRAVSDSTP	9	Unmodified	_IRAVSDSTP_					0	0	0			REV__RASSF8|p.A110Vfs*3|1|0.09|ENSG00000123094|chr12:26064723-26064723|C/-|frameshift_variant	REV__RASSF8|p.A110Vfs*3|1|0.09|ENSG00000123094|chr12:26064723-26064723|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.25341796875	2	473.253631	944.49271	-0.4263	-0.00020175	0.25935	0.00012274	-0.16694	-7.9007E-05	473.2536857845434	30.598	0.99996	30.598	30.3	31.3	0					66	23	4	0	0	0	0.20967	1	1968	1968		87.754	2.8388	1	3587400	+		27959	22677	19275	19316	32268	32268					0.018242930294718462
IRAVVAVKH	9	Unmodified	_IRAVVAVKH_					0	0	0			REV__ENST00000510283.5_1_17:49048172-49052146:-|nuORF	REV__ENST00000510283.5_1_17:49048172-49052146:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.8218688964844	2	496.821818	991.629084	0.025616	1.2726E-05	-0.22812	-0.00011333	-0.2025	-0.00010061	496.8215724046988	42.39	0.58557	42.416	42.056	42.641	0.026012					49	16	4	0	0	0	0.70186	1	3841	3841		45.952	7.1458	1	2675100	+		27960	34102	19276	19317	32269	32269					0.13293452050652377
IRAYLLDVV	9	Unmodified	_IRAYLLDVV_					0	0	0		nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.322021484375	2	531.321317	1060.62808	-0.10718	-5.6947E-05	-0.28484	-0.00015134	-0.39202	-0.00020829	531.3211904545689	75.221	1.0504	75.231	74.773	75.824	0.010376					55	27	3	0	0	0	0.62163	1	9147	9147		51.335	0.14276	1	1580600			27961	965	19277	19318	32270	32270					0.10019192891104467
IRCKFAALGE	10	Unmodified	_IRCKFAALGE_					0	0	0		ENST00000477870.5_1_20:39796371-39799023:+|nuORF	ENST00000477870.5_1_20:39796371-39799023:+|nuORF	ENST00000477870.5_1_20:39796371-39799023:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.787353515625	2	554.302601	1106.59065	-0.27185	-0.00015069	2.9317	0.0016251	2.6599	0.0014744	554.8072930580785	82.201	0.24746	82.201	82.031	82.279	0					7	5	2	0	0	0	0.03519	1	10268	10268		45.972	19.176	1	72752			27962	15120	19278	19319	32271	32271					0.041617783538185904
IRDIGSELM	9	Oxidation (M)	_IRDIGSELM(Oxidation (M))_		IRDIGSELM(1)		IRDIGSELM(85)	0	0	1			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2666625976562	2	525.268424	1048.5223	0.4855	0.00025502	-2.8795	-0.0015125	-2.394	-0.0012575	525.2663346084731	83.672	1.4056	83.503	82.948	84.353	-0.16915					82	32	5	0	0	0	0.22754	1	10099	10099		85.359	15.732	1	1012100	+		27963	20075	19279	19320	32272	32272		619			-2.5110166916419985E-05
IRDKKKLQ	8	Unmodified	_IRDKKKLQ_					0	0	0		nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-2|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.83203125	2	514.832383	1027.65021	3.6543	0.0018814	-3.6766	-0.0018928	-0.022262	-1.1461E-05	514.8304003504121	18.093	0.54772	17.85	17.627	18.175	-0.24256					17	10	2	0	0	0	1.0338	1	234	234		31.955	1.4512	1	229670			27964	3154	19280	19321	32273	32273					0.13749417359508698
IRDLEAEV	8	Unmodified	_IRDLEAEV_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7559814453125	2	472.756007	943.497461	0.62469	0.00029532	-0.70598	-0.00033376	-0.081294	-3.8432E-05	472.75569445559984	42.73	2.1159	42.73	41.615	43.731	0					119	59	5	0	0	0	0.33369	1	3935	3935		106.42	4.8145	1	9887000			27965	6681	19281	19322	32274	32274					0.023451771722420744
IRDNDNWSLP	10	Unmodified	_IRDNDNWSLP_					0	0	0			REV__ENST00000394170.6_1_7:99102762-99103717:+|nuORF	REV__ENST00000394170.6_1_7:99102762-99103717:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.5354919433594	3	410.53516	1228.58365	0.074179	3.0453E-05	-0.12305	-5.0515E-05	-0.048869	-2.0062E-05	410.5350023266534	47.124	0.80363	47.027	46.754	47.558	-0.096649					49	21	3	0	0	0	0.99077	1	4598	4598		47.228	3.8091	1	3202100	+		27966	31664	19282	19323	32275	32275					-0.021498629930420066
IRDNDNWSLP	10	Unmodified	_IRDNDNWSLP_					0	0	0			REV__ENST00000394170.6_1_7:99102762-99103717:+|nuORF	REV__ENST00000394170.6_1_7:99102762-99103717:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	410.53516	1228.58365	-0.066689	-2.7378E-05	-0.24084	-9.8872E-05	-0.30753	-0.00012625	410.53497764441045	47.264	0.63572	47.071	46.814	47.45	-0.19387	-0.030681	0.00038166	NaN	47.228	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2777000	+		27967	31664	19282	19323							-0.021498629930420066
IRDPQDQNC	9	Unmodified	_IRDPQDQNC_					0	0	0			REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3	REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.314453125	2	544.743105	1087.47166	-0.52633	-0.00028672	0.41702	0.00022717	-0.10931	-5.9547E-05	544.7433589365938	42.756	1.3172	42.522	41.969	43.286	-0.23355					82	34	5	0	0	0	0.02435	1	3787	3787		51.335	0	1	1463700	+		27968	21610	19283	19324	32276	32276					-0.06858040341694505
IRDPRAKDFA	10	Unmodified	_IRDPRAKDFA_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.8316040039062	2	594.827829	1187.64111	0.031652	1.8828E-05	3.7917	0.0022554	3.8234	0.0022742	594.8299898178623	58.358	0.78216	58.116	57.879	58.661	-0.24165					43	18	3	0	0	0	0.83673	1	6397	6397		58.23	3.4536	1	1654700			27969	6234	19284	19325	32277	32277					0.054790240031934445
IRDVQWNY	8	Unmodified	_IRDVQWNY_					0	0	0		HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant;HEPH|p.R1086Efs*8|1|0.77|ENSG00000089472|chrX:66266445-66266445|C/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant	HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3273315429688	2	547.274898	1092.53524	-0.69695	-0.00038142	1.1327	0.00061992	0.43578	0.00023849	547.2757745386937	41.37	1.9032	41.393	40.349	42.252	0.023006					194	54	5	0	0	0	0.027866	1	3743	3743		79.939	0	1	13174000			27970	1907	19285	19326	32278	32278					-0.007323118422846164
IREDLNGVS	9	Unmodified	_IREDLNGVS_					0	0	0			REV__ENSG00000103479|ENST00000262133|RBL2	REV__ENSG00000103479|ENST00000262133|RBL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.79296875	2	501.764363	1001.51417	0.22276	0.00011177	1.9255	0.00096613	2.1482	0.0010779	501.76501968936407	51.943	0.47827	51.759	51.337	51.815	-0.18404					19	12	2	0	0	0	0.024319	1	5356	5356		47.657	0	1	572580	+		27971	21387	19286	19327	32279	32279					0.013476780581981984
IREEEVSY	8	Unmodified	_IREEEVSY_					0	0	0		ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENST00000506936.1_1_4:56768485-56770658:+|nuORF	ENSG00000090989|ENST00000381295|EXOC1	ENSG00000090989|ENST00000381295|EXOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3021240234375	2	512.750921	1023.48729	-1.0549	-0.0005409	0.89916	0.00046104	-0.15574	-7.9858E-05	512.7512838125162	51.611	0.86181	51.335	50.891	51.753	-0.27612					52	22	4	0	0	0	0.027866	1	5305	5305		45.952	0	1	1483000			27972	1946	19287	19328	32280	32280					-0.023514305529943158
IREETVSL	8	Unmodified	_IREETVSL_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.7637939453125	2	473.763832	945.513111	-0.28668	-0.00013582	0.23746	0.0001125	-0.04922	-2.3319E-05	473.76387065282745	34.912	0.64501	34.89	34.551	35.196	-0.021763					44	16	3	0	0	0	0.47665	1	2626	2626		87.754	0.057861	1	3512600			27973	831	19288	19329	32281	32281					0.03817463689279066
IREHVILN	8	Unmodified	_IREHVILN_					0	0	0			REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF	REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2970886230469	2	497.295633	992.576714	0.5982	0.00029748	3.2278	0.0016051	3.826	0.0019026	497.29713382221155	69.867	2.3595	69.574	68.634	70.993	-0.29291					150	63	4	0	0	0	0.96769	1	8329	8329		42.396	3.59	1	3690300	+		27974	27812	19289	19330	32282	32282					0.08012868917035121
IREIHLELSV	10	Unmodified	_IREIHLELSV_					0	0	0			REV__nc|ENSG00000125450|Q9BW27-2|NUP85	REV__nc|ENSG00000125450|Q9BW27-2|NUP85	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5721740722656	3	403.571434	1207.69247	0.54672	0.00022064	0.42168	0.00017018	0.96839	0.00039082	403.57158804731324	42.75	1.6081	42.517	42.155	43.763	-0.23262					120	42	4	0	0	0	1.0545	1	3880	3880		38.754	3.5754	1	5880100	+		27975	22818	19290	19331	32283	32283					0.09693347977213307
IREIHLELSV	10	Unmodified	_IREIHLELSV_					0	0	0			REV__nc|ENSG00000125450|Q9BW27-2|NUP85	REV__nc|ENSG00000125450|Q9BW27-2|NUP85	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.5722961425781	3	403.571434	1207.69247	-0.75972	-0.0003066	1.7737	0.0007158	1.0139	0.0004092	403.57214569371973	42.804	1.3312	42.578	42.26	43.591	-0.22597					97	35	4	0	0	0	1.0997	1	3882	3882		32.751	4.669	1	4823100	+		27976	22818	19290	19331	32284	32284					0.09693347977213307
IREITRGKN	9	Unmodified	_IREITRGKN_					0	0	0		ENST00000412638.2_1_1:227884598-227884916:-|nuORF	ENST00000412638.2_1_1:227884598-227884916:-|nuORF	ENST00000412638.2_1_1:227884598-227884916:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8198852539062	2	543.822547	1085.63054	-0.91122	-0.00049554	-0.99951	-0.00054355	-1.9107	-0.0010391	543.8204033181283	47.63	2.1834	47.63	47.216	49.399	0					176	63	6	0	0	0	0.62163	1	4808	4808		51.335	1.7994	1	22379000			27977	13821	19291	19332	32285	32285					0.09115041348741215
IREKADSI	8	Unmodified	_IREKADSI_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.263671875	2	466.263999	930.513445	-0.21159	-9.8656E-05	-1.2489	-0.00058231	-1.4605	-0.00068097	466.2634922538418	37.863	2.0014	37.684	37.363	39.365	-0.17929					143	55	5	0	0	0	0.50239	1	3064	3064		85.359	0	1	78690000			27978	8423	19292	19333	32286	32286					0.04540883409140406
IRELTPGKSP	10	Unmodified	_IRELTPGKSP_					0	0	0		ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.318115234375	2	549.319306	1096.62406	-0.14116	-7.7542E-05	-2.4581	-0.0013503	-2.5993	-0.0014278	549.3178899882961	99.835	0.49946	99.664	99.361	99.861	-0.17088					45	13	4	0	0	0	1.1088	1	12382	12382		31.53	2.3598	1	420940			27979	10670	19293	19334	32287	32287					0.0796110339738334
IREWYCRECRE	11	Unmodified	_IREWYCRECRE_					0	0	0		ENST00000586365.5_1_18:47812373-47813998:-|nuORF;ENST00000590901.5_1_18:47812373-47813282:-|nuORF;CXXC1|p.N621Kfs*6|1|0.34|ENSG00000154832|chr18:50282701-50282701|A/-|frameshift_variant;ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1	ENST00000586365.5_1_18:47812373-47813998:-|nuORF	ENST00000586365.5_1_18:47812373-47813998:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2800903320312	3	514.90286	1541.68675	-0.0035271	-1.8161E-06	0.45345	0.00023348	0.44992	0.00023167	514.9030479735845	39.522	0.37605	39.522	39.357	39.733	0					15	10	2	0	0	0	0.02486	1	3388	3388		12.957	0.52465	1	168140			27980	610	19294	19335	32288	32288					-0.06242441868403148
IRFFETSAKSS	11	Unmodified	_IRFFETSAKSS_					0	0	0		ENSG00000143545|ENST00000368575|RAB13	ENSG00000143545|ENST00000368575|RAB13	ENSG00000143545|ENST00000368575|RAB13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.8623046875	3	424.890944	1271.651	0.19933	8.4695E-05	0.40897	0.00017377	0.60831	0.00025846	425.2264710815521	30.203	0.5954	30.053	29.584	30.18	-0.14952					16	13	2	0	0	0	0.024747	1	1849	1849		33.039	1.9713	1	39462			27981	5661	19295	19336	32289	32289					0.02604167217896247
IRFGIVSLN	9	Unmodified	_IRFGIVSLN_					0	0	0			REV__nc|ENSG00000277734|P01848|TRAC	REV__nc|ENSG00000277734|P01848|TRAC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.803955078125	2	509.805834	1017.59712	-0.39701	-0.0002024	-3.7604	-0.0019171	-4.1574	-0.0021195	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	0.92825	1	10855	10855		30.504	0	1	3182000	+		27982	37206	19296	19337	32290	32290					0.08902039576832976
IRFKKVLV	8	Unmodified	_IRFKKVLV_					0	0	0			REV__ENST00000471904.1_1_2:192128111-192215016:+|nuORF	REV__ENST00000471904.1_1_2:192128111-192215016:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.80035400390625	2	501.844762	1001.67497	-0.033439	-1.6781E-05	3.2481	0.00163	3.2146	0.0016133	501.84647879106114	46.438	0.20717	46.489	46.408	46.615	0.051395					8	5	2	0	0	0	0.027866	1	4552	4552		20.482	11.66	1	95909	+		27983	33188	19297	19338	32291	32291					0.17420097232877652
IRFKPTQT	8	Unmodified	_IRFKPTQT_					0	0	0			REV__nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	REV__nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.745849609375	2	495.790184	989.565815	-0.27666	-0.00013716	-4.0752	-0.0020204	-4.3518	-0.0021576	495.7880996121471	25.757	0.51595	25.757	25.527	26.043	0					19	11	2	0	0	0	0.027866	1	1280	1280		53.351	2.016	1	128400	+		27984	37102	19298	19339	32292	32292					0.0706146654274562
IRFKVTQEP	9	Unmodified	_IRFKVTQEP_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.3218383789062	2	559.321848	1116.62914	0.46488	0.00026002	-0.66707	-0.00037311	-0.20219	-0.00011309	559.321376096884	72.642	1.1994	72.361	71.92	73.119	-0.28124					48	29	3	0	0	0	0.082191	1	8800	8800		116.9	3.492	1	2008000	+	+	27985	19526	19299	19340	32293	32293					0.07549407259966756
IRFKVTQEP	9	Unmodified	_IRFKVTQEP_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.321848	1116.62914	-0.10439	-5.8389E-05	0.15944	8.9177E-05	0.055045	3.0788E-05	559.3217103301249	72.495	0.46326	72.218	71.947	72.411	-0.2769	-0.038846	0.0010542	NaN	116.9	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219310	+	+	27986	19526	19299	19340							0.07549407259966756
IRFKVTQEP	9	Unmodified	_IRFKVTQEP_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.321848	1116.62914	0.23317	0.00013042	0.25254	0.00014125	0.48571	0.00027167	559.3220493076913	72.474	0.50749	72.209	71.961	72.469	-0.26479	-0.047791	0.0011584	NaN	116.9	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262300	+	+	27987	19526	19299	19340							0.07549407259966756
IRFKVTQEP	9	Unmodified	_IRFKVTQEP_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.321848	1116.62914	-0.62209	-0.00034795	1.4813	0.00082854	0.85924	0.00048059	559.3225647436086	72.323	0.62283	72.125	71.748	72.371	-0.19811	-0.1321	0.002533	NaN	116.9	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207630	+	+	27988	19526	19299	19340							0.07549407259966756
IRFRSVKGMTK	11	Unmodified	_IRFRSVKGMTK_					0	0	0			REV__ENSG00000156858|ENST00000300835|PRR14	REV__ENSG00000156858|ENST00000300835|PRR14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.85369873046875	3	441.595696	1321.76526	-0.091794	-4.0536E-05	-2.6059	-0.0011508	-2.6977	-0.0011913	441.59446351055266	31.652	0.50282	31.5	31.197	31.699	-0.15231					23	12	3	0	0	0	0.024734	1	2107	2107		14.243	0	1	90514	+		27989	25093	19300	19341	32294	32294					0.11724778498978594
IRFSYPSI	8	Unmodified	_IRFSYPSI_					0	0	0		ENSG00000255374|ENST00000531678|TAS2R43;ENSG00000256436|ENST00000390675|TAS2R31	ENSG00000255374|ENST00000531678|TAS2R43	ENSG00000255374|ENST00000531678|TAS2R43	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.769775390625	2	491.77146	981.528367	-0.56742	-0.00027904	-3.5978	-0.0017693	-4.1653	-0.0020484	491.7695137494705	27.983	0.80066	27.983	27.689	28.49	0					50	19	4	0	0	0	0.50239	1	1597	1597		85.359	15.732	1	2056700			27990	10892	19301	19342	32295	32295					0.036863752771296276
IRGCLRYPSL	10	Unmodified	_IRGCLRYPSL_					0	0	0			REV__ENST00000469940.5_1_6:32148953-32149268:-|nuORF	REV__ENST00000469940.5_1_6:32148953-32149268:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.3432006835938	2	589.32915	1176.64375	-2.3614	-0.0013916	0.7841	0.0004621	-1.5773	-0.00092953	589.3298933009236	91.38	0.21242	91.38	91.299	91.511	0					6	4	2	0	0	0	0.03519	1	11568	11568		27.047	16.182	1	46717	+		27991	33142	19302	19343	32296	32296					0.0624915613648227
IRGIRHVTS	9	Unmodified	_IRGIRHVTS_					0	0	0		nc|ENSG00000141098|Q3B7J2-2|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;ENSG00000141098|ENST00000268797|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7435302734375	2	519.811982	1037.60941	-0.83972	-0.0004365	1.5694	0.0008158	0.72969	0.0003793	519.8127036580576	44.003	0.30268	43.783	43.597	43.9	-0.21938					11	7	2	0	0	0	0.024541	1	4051	4051		17.365	7.0997	1	132010			27992	5471	19303	19344	32297	32297					0.09211076039900945
IRGLQMKAE	9	Oxidation (M)	_IRGLQM(Oxidation (M))KAE_		IRGLQM(1)KAE		IRGLQM(85)KAE	0	0	1		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2904052734375	2	531.292233	1060.56991	-1.1374	-0.00060428	-2.5014	-0.001329	-3.6388	-0.0019333	531.2906066197035	51.022	0.44682	51.109	50.855	51.302	0.087006					39	11	4	0	0	0	0.23085	1	5312	5312		84.916	8.1414	1	5239400			27993	4782	19304	19345	32298	32298		192			0.042051879741620724
IRGLSEPINHR	11	Unmodified	_IRGLSEPINHR_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|97|2|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|97|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	646.3648071289062	2	646.36511	1290.71567	-2.1546	-0.0013927	3.0441	0.0019676	0.88951	0.00057495	646.3670544986726	46.371	0.64639	46.274	45.999	46.645	-0.096649					62	17	5	0	0	0	1.0429	1	4456	4456		27.047	1.4733	1	16880000	+		27994	36227	19305	19346	32299	32299					0.08193786814535997
IRGNKKVE	8	Unmodified	_IRGNKKVE_					0	0	0			REV__nc|ENSG00000118520|P05089-3|ARG1	REV__nc|ENSG00000118520|P05089-3|ARG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2877197265625	2	472.287808	942.561064	-0.48925	-0.00023107	0.00055468	2.6197E-07	-0.4887	-0.00023081	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.043	1	11660	11660		30.504	0	1	45907000	+		27995	22414	19306	19347	32300	32300					0.0874858239999412
IRGQFYYISD	10	Unmodified	_IRGQFYYISD_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8863220214844	3	421.211906	1260.61389	-0.011834	-4.9845E-06	1.3079	0.00055092	1.2961	0.00054594	421.2122520543919	17.831	0.34831	17.625	17.514	17.863	-0.20669					10	6	2	0	0	0	0.03519	1	235	235		10.587	3.9272	1	8605.7			27996	10283	19307	19348	32301	32301					-0.005995043278744561
IRGSLNKWPVL	11	Unmodified	_IRGSLNKWPVL_					0	0	0			REV__ENST00000375746.1_1_9:93607798-93607834:+|nuORF	REV__ENST00000375746.1_1_9:93607798-93607834:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.88232421875	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0238	1	11828	11828		31.53	1.2121	1	3558500	+		27997	31335	19308	19349	32302	32302					0.12613333485114708
IRGVINQL	8	Unmodified	_IRGVINQL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7828369140625	2	456.784902	911.55525	0.8926	0.00040773	-1.4744	-0.0006735	-0.58183	-0.00026577	456.7841271869781	49.29	0.44382	49.29	49.176	49.62	0					26	11	3	0	0	0	0.24207	1	5086	5086		133.47	41.278	1	1496100			27998	5194	19309	19350	32303	32303					0.09593483888306764
IRGVINQL	8	Unmodified	_IRGVINQL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7832336425781	2	456.784902	911.55525	0.042522	1.9423E-05	-0.53244	-0.00024321	-0.48992	-0.00022379	456.7845496285371	49.471	0.5233	49.32	49.148	49.671	-0.1512					26	13	3	0	0	0	0.29372	1	5092	5092		114.59	9.317	1	1996500			27999	5194	19309	19350	32304	32304					0.09593483888306764
IRGVINQL	8	Unmodified	_IRGVINQL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7832336425781	2	456.784902	911.55525	-1.2107	-0.00055305	0.42642	0.00019478	-0.78431	-0.00035826	456.7849571536211	49.186	0.29678	49.26	49.169	49.465	0.074196					20	7	3	0	0	0	0.27193	1	5006	5006		123.99	9.4029	1	2195500			28000	5194	19309	19350	32305	32305					0.09593483888306764
IRGVINQL	8	Unmodified	_IRGVINQL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7837829589844	2	456.784902	911.55525	-0.21379	-9.7655E-05	-0.41729	-0.00019061	-0.63108	-0.00028827	456.78452677280166	49.224	0.57457	49.123	49.029	49.604	-0.1008					28	14	3	0	0	0	0.2822	1	4938	4938		119.56	9.2196	1	1474700			28001	5194	19309	19350	32306	32306					0.09593483888306764
IRGVINQL	8	Unmodified	_IRGVINQL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MSMS	OPSCC_40_ClassI_Rep-2	5	456.7820739746094	2	456.784902	911.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.487	1	49.207	48.707	49.707	-0.27977								0	0	0	0.32588	1	4962	4962		79.939	3.0926	1				28002	5194	19309	19350	32307	32307					0.09593483888306764
IRHLPLTVYTL	11	Unmodified	_IRHLPLTVYTL_					0	0	0			REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.6011962890625	3	442.602845	1324.78671	-0.23145	-0.00010244	-3.7713	-0.0016692	-4.0027	-0.0017716	442.60109763149904	102.37	0.6118	102.37	102.08	102.69	0					24	13	2	0	0	0	1.0592	1	13132	13132		22.562	2.2466	1	667140	+		28003	21102	19310	19351	32308	32308					0.13730486799340724
IRHPEPVP	8	Unmodified	_IRHPEPVP_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7518615722656	2	472.769252	943.52395	0.033625	1.5897E-05	-0.41599	-0.00019667	-0.38237	-0.00018077	472.7689973337831	33.612	0.49272	33.619	33.388	33.881	0.0066223					30	12	3	0	0	0	0.027866	1	2459	2459		38.806	3.6054	1	589740	+		28004	26568	19311	19352	32309	32309					0.04992910854230104
IRHYLQQMQ	9	Unmodified	_IRHYLQQMQ_					0	0	0			REV__ENST00000439676.5_1_10:28903583-28905211:+|nuORF	REV__ENST00000439676.5_1_10:28903583-28905211:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8164672851562	2	608.816407	1215.61826	-0.21206	-0.00012911	1.0314	0.00062794	0.81935	0.00049883	608.8169655148004	99.671	1.2822	99.681	99.268	100.55	0.010231					75	31	5	0	0	0	1.0148	1	12735	12735		17.365	0.89182	1	4620800	+		28005	32512	19312	19353	32310	32310					0.019076816140568553
IRIAHPCSY	9	Carbamidomethyl (C)	_IRIAHPC(Carbamidomethyl (C))SY_	IRIAHPC(1)SY		IRIAHPC(71)SY		0	1	0			REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.782470703125	2	558.784576	1115.5546	0.12774	7.1378E-05	-4.3621	-0.0024375	-4.2344	-0.0023661	558.7820133291253	36.485	0.58975	36.269	35.981	36.57	-0.21661					41	14	4	0	0	0	0.33245	1	2869	2869		71.296	20.103	1	1616500	+		28006	28520	19313	19354	32311	32311	373				0.0014432117695832858
IRIAHPCSY	9	Carbamidomethyl (C)	_IRIAHPC(Carbamidomethyl (C))SY_					0	1	0			REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	558.784576	1115.5546	-0.25045	-0.00013995	-3.9568	-0.002211	-4.2073	-0.002351	558.7822430699233	36.532	0.66703	36.327	36.056	36.723	-0.20518	0.056818	0.00074958	NaN	71.296	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1582200	+		28007	28520	19313	19354			373				0.0014432117695832858
IRIAHPCSY	9	Carbamidomethyl (C)	_IRIAHPC(Carbamidomethyl (C))SY_					0	1	0			REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	558.784576	1115.5546	0.12774	7.1378E-05	-4.3621	-0.0024375	-4.2344	-0.0023661	558.7820133291253	36.485	0.58975	36.269	35.981	36.57	-0.21661	-0.0012219	0.00029664	NaN	71.296	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1616500	+		28008	28520	19313	19354			373				0.0014432117695832858
IRIAHPCSY	9	Carbamidomethyl (C)	_IRIAHPC(Carbamidomethyl (C))SY_					0	1	0			REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	REV__KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.784576	1115.5546	1.3021	0.0007276	-5.6904	-0.0031797	-4.3883	-0.0024521	558.7812713254554	36.412	0.73995	36.214	35.876	36.616	-0.19829	-0.055596	-0.0011879	NaN	71.296	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1223400	+		28009	28520	19313	19354			373				0.0014432117695832858
IRIDLIRYTG	10	Unmodified	_IRIDLIRYTG_					0	0	0			REV__ENST00000266682.9_1_12:85286049-85306341:-|nuORF	REV__ENST00000266682.9_1_12:85286049-85306341:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	610.3602905273438	2	610.361505	1218.70846	-1.1272	-0.00068798	-0.2356	-0.0001438	-1.3628	-0.00083178	610.3612644945106	46.068	0.62709	45.916	45.683	46.31	-0.15156					50	17	4	0	0	0	1.1307	1	4505	4505		26.693	2.1737	1	3967400	+		28010	29762	19314	19355	32312	32312					0.10785054214102274
IRIDVFVY	8	Unmodified	_IRIDVFVY_					0	0	0			REV__ENST00000576129.5_1_17:1936818-1940251:+|nuORF	REV__ENST00000576129.5_1_17:1936818-1940251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.73388671875	2	512.794935	1023.57532	0.098021	5.0265E-05	-1.9949	-0.001023	-1.8968	-0.00097269	512.7925855971137	58.681	0.76467	58.5	58.187	58.952	-0.18134					49	18	4	0	0	0	0.027866	1	6524	6524		37.159	8.0096	1	1484800	+		28011	21773	19315	19356	32313	32313					0.0644723482827203
IRILAWAP	8	Unmodified	_IRILAWAP_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2214660644531	2	470.292362	938.570172	0.6177	0.0002905	-0.029607	-1.3924E-05	0.58809	0.00027657	470.2921075084421	68.238	0.40616	67.983	67.821	68.227	-0.25517					14	9	2	0	0	0	0.027866	1	7886	7886		15.636	0	1	91508			28012	3018	19316	19357	32314	32314					0.0984297575630535
IRIQSLVSSL	10	Unmodified	_IRIQSLVSSL_					0	0	0			REV__ENSG00000170852|ENST00000304056|KBTBD2	REV__ENSG00000170852|ENST00000304056|KBTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.3301391601562	2	558.342781	1114.67101	-0.29382	-0.00016405	-0.16232	-9.0633E-05	-0.45614	-0.00025468	558.3425963492571	66.821	2.0085	66.821	66.552	68.56	0					126	50	4	0	0	0	0.41983	2	7944	7944;7960		96.665	4.0511	1	11707000	+		28013	26515	19317	19358	32315;32316	32315					0.11825962948501001
IRIQSLVSSL	10	Unmodified	_IRIQSLVSSL_					0	0	0			REV__ENSG00000170852|ENST00000304056|KBTBD2	REV__ENSG00000170852|ENST00000304056|KBTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.3447875976562	2	558.342781	1114.67101	-0.51005	-0.00028478	-0.18477	-0.00010317	-0.69482	-0.00038795	558.3425965955006	67.18	2.0152	66.898	66.63	68.645	-0.28148					162	50	5	0	0	0	0.37307	3	8013	7997;8013;8025		101.46	15.598	1	10552000	+		28014	26515	19317	19358	32317;32318;32319	32318					0.11825962948501001
IRIQSLVSSL	10	Unmodified	_IRIQSLVSSL_					0	0	0			REV__ENSG00000170852|ENST00000304056|KBTBD2	REV__ENSG00000170852|ENST00000304056|KBTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3436889648438	2	558.342781	1114.67101	0.063281	3.5333E-05	-0.68579	-0.0003829	-0.62251	-0.00034757	558.3423337379335	67.081	2.0692	67.105	66.769	68.838	0.023903					159	52	5	0	0	0	0.39693	3	7919	7907;7919;7944		99.013	15.096	1	9358700	+		28015	26515	19317	19358	32320;32321;32322	32321					0.11825962948501001
IRKAASNLGPS	11	Unmodified	_IRKAASNLGPS_					0	0	0			REV__ENSG00000127152|ENST00000357195|BCL11B	REV__ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.3239135742188	2	557.32238	1112.63021	-0.076728	-4.2762E-05	3.3615	0.0018734	3.2848	0.0018307	557.324192551319	75.851	1.3778	75.675	75.351	76.728	-0.17548					88	33	4	0	0	0	0.61592	1	9012	9012		68.846	1.3525	1	5983500	+		28016	22920	19318	19359	32323	32323					0.07839621628863824
IRKEGRQL	8	Unmodified	_IRKEGRQL_					0	0	0		ENSG00000161682|ENST00000293443|FAM171A2	ENSG00000161682|ENST00000293443|FAM171A2	ENSG00000161682|ENST00000293443|FAM171A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.30706787109375	2	500.306532	998.598512	0.60592	0.00030315	2.0355	0.0010184	2.6414	0.0013215	500.3072877715326	96.549	0.69321	96.413	96.142	96.835	-0.1367					33	15	3	0	0	0	0.87148	1	11930	11930		53.351	2.1588	1	460540			28017	6890	19319	19360	32324	32324					0.09915673665602753
IRKGTKAPQ	9	Unmodified	_IRKGTKAPQ_					0	0	0		ENSG00000138430|ENST00000284719|OLA1;nc|ENSG00000138430|Q9NTK5-2|OLA1;TMEM131-OLA1|1|fusion;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENSG00000138430|ENST00000284719|OLA1;ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENSG00000138430|ENST00000284719|OLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2833557128906	2	499.808908	997.603263	-0.91706	-0.00045835	0.14212	7.1034E-05	-0.77494	-0.00038732	499.80870706462173	37.92	0.63452	37.951	37.599	38.233	0.030479					26	17	2	0	0	0	0.024495	1	3074	3074		34.173	7.4796	1	467590			28018	5242;13553	19320	19361	32325	32325					0.10436557808361613
IRKHTKELSPT	11	Unmodified	_IRKHTKELSPT_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.25714111328125	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	1.0327	1	12043	12043		29.551	1.9068	1	1104700			28019	3717	19321	19362	32326	32326					0.10935824271541605
IRKKDPVL	8	Unmodified	_IRKKDPVL_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.8161315917969	2	484.816202	967.617851	0.054416	2.6382E-05	0.15445	7.488E-05	0.20887	0.00010126	484.81611620956477	34.203	0.69894	33.978	33.68	34.379	-0.22412					49	17	4	0	0	0	0.68535	1	2492	2492		68.485	0	1	2288700			28020	689	19322	19363	32327	32327					0.13274629956515582
IRKKDPVL	8	Unmodified	_IRKKDPVL_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.8169860839844	2	484.816202	967.617851	-0.24311	-0.00011786	0.45676	0.00022144	0.21365	0.00010358	484.81627896702776	34.146	0.77706	33.939	33.549	34.326	-0.20696					61	19	4	0	0	0	0.56067	1	2491	2491		79.939	16.961	1	2424300			28021	689	19322	19363	32328	32328					0.13274629956515582
IRKKDPVL	8	Unmodified	_IRKKDPVL_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.8164978027344	2	484.816202	967.617851	-0.74911	-0.00036318	0.3693	0.00017904	-0.3798	-0.00018413	484.8163046792854	34.18	0.75113	34.004	33.662	34.413	-0.17557					34	18	2	0	0	0	0.68535	1	2478	2478		68.485	5.5063	1	2278600			28022	689	19322	19363	32329	32329					0.13274629956515582
IRKKDPVL	8	Unmodified	_IRKKDPVL_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.816202	967.617851	-0.50498	-0.00024482	-0.25682	-0.00012451	-0.7618	-0.00036933	484.81591303482617	33.702	0.62941	33.702	33.421	34.05	0	-0.089661	-0.00039173	NaN	79.939	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410320			28023	689	19322	19363							0.13274629956515582
IRKKDPVL	8	Unmodified	_IRKKDPVL_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.816202	967.617851	-0.5506	-0.00026694	-0.085845	-4.1619E-05	-0.63645	-0.00030856	484.8160016857962	33.558	0.59789	33.564	33.321	33.919	0.0066223	-0.22782	-0.00022595	NaN	79.939	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495150			28024	689	19322	19363							0.13274629956515582
IRKKDPVL	8	Unmodified	_IRKKDPVL_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.816202	967.617851	-0.18388	-8.9146E-05	-0.34923	-0.00016931	-0.5331	-0.00025846	484.81583462096967	33.508	0.69695	33.565	33.315	34.012	0.056568	-0.22763	-0.00048133	NaN	79.939	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417150			28025	689	19322	19363							0.13274629956515582
IRKKLLPE	8	Unmodified	_IRKKLLPE_					0	0	0		nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	nc|ENSG00000142405|P59046-2|NLRP12	nc|ENSG00000142405|P59046-2|NLRP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.8034362792969	2	498.831852	995.649151	0.61447	0.00030651	-2.1443	-0.0010696	-1.5298	-0.00076313	498.83049825993453	53.002	0.15925	52.743	52.644	52.803	-0.25838					6	3	2	0	0	0	0.027866	1	5511	5511		17.365	5.1581	1	80961			28026	5556	19323	19364	32330	32330					0.15115202990602938
IRKKLVHKTL	10	Unmodified	_IRKKLVHKTL_					0	0	0		nc|ENSG00000259706|Q58FF3|HSP90B2P	nc|ENSG00000259706|Q58FF3|HSP90B2P	nc|ENSG00000259706|Q58FF3|HSP90B2P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	618.4217529296875	2	618.419157	1234.82376	-0.8395	-0.00051916	4.043	0.0025003	3.2035	0.0019811	618.4213959506743	102.86	0.41629	102.74	102.5	102.91	-0.12783					21	9	4	0	0	0	1.1179	1	12800	12800		19.997	4.355	1	1291200			28027	18781	19324	19365	32331	32331					0.21574203135787684
IRKPPSVVN	9	Unmodified	_IRKPPSVVN_					0	0	0		ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3106689453125	2	505.311284	1008.60801	-0.42724	-0.00021589	-0.17236	-8.7093E-05	-0.5996	-0.00030298	505.3110421705399	35.196	2.0051	35.24	34.167	36.172	0.044056					116	52	5	0	0	0	0.2101	1	2646	2646		87.696	2.7809	1	3331600			28028	12230	19325	19366	32332	32332					0.10405441951127159
IRKQAMDF	8	Unmodified	_IRKQAMDF_					0	0	0			REV__nc|ENSG00000143248|O15539-3|RGS5	REV__nc|ENSG00000143248|O15539-3|RGS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.8003234863281	2	504.768394	1007.52224	-0.13644	-6.8871E-05	1.2426	0.00062721	1.1061	0.00055834	504.7690189056334	58.126	0.24655	58.217	58.05	58.297	0.091217					11	6	2	0	0	0	0.027866	1	6472	6472		18.324	4.5491	1	419810	+		28029	24216	19326	19367	32333	32333					0.01877533773961204
IRKRVSKRKLF	11	Unmodified	_IRKRVSKRKLF_					0	0	0			REV__ENST00000357337.10_1_13:77671591-77671720:-|nuORF	REV__ENST00000357337.10_1_13:77671591-77671720:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7773742675781	3	477.652533	1429.93577	0.25789	0.00012318	-1.5019	-0.00071738	-1.244	-0.00059419	477.6516342943464	27.461	0.18255	27.461	27.361	27.544	0					5	4	2	0	0	0	0.02486	1	1511	1511		12.957	7.2587	1	30556	+		28030	30827	19327	19368	32334	32334					0.23800057212770298
IRKVVRQI	8	Unmodified	_IRKVVRQI_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-5|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;ENST00000524227.5_1_8:41519075-41530298:-|nuORF;nc|ENSG00000029534|P16157-23|ANK1;nc|ENSG00000029534|P16157-17|ANK1	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.30010986328125	2	506.342918	1010.67128	-0.35357	-0.00017903	0.95089	0.00048147	0.59731	0.00030244	506.344033318906	32.219	0.15273	32.282	32.2	32.352	0.062889					5	3	2	0	0	0	0.027866	1	2177	2177		101.21	9.0209	1	38863			28031	18041	19328	19369	32335	32335					0.16637427459022547
IRKWIADL	8	Unmodified	_IRKWIADL_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3008117675781	2	507.808377	1013.6022	-0.12789	-6.4943E-05	-0.10323	-5.2423E-05	-0.23112	-0.00011737	507.8079146755617	42.936	0.61478	42.796	42.448	43.063	-0.13929					27	16	2	0	0	0	0.027866	1	3921	3921		53.351	27.777	1	223560			28032	664	19329	19370	32336	32336					0.09594343439448494
IRKWIADL	8	Unmodified	_IRKWIADL_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2994384765625	2	507.808377	1013.6022	0.22187	0.00011267	-0.31884	-0.00016191	-0.096975	-4.9245E-05	507.80795131257526	42.872	0.58167	42.898	42.605	43.186	0.026012					25	15	2	0	0	0	0.027866	1	3876	3876		53.351	22.848	1	205230			28033	664	19329	19370	32337	32337					0.09594343439448494
IRLALFGW	8	Unmodified	_IRLALFGW_					0	0	0		ENST00000465124.1_1_9:127634910-127635171:+|nuORF	ENST00000465124.1_1_9:127634910-127635171:+|nuORF	ENST00000465124.1_1_9:127634910-127635171:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.26397705078125	2	488.292362	974.570172	3.0232	0.0014762	2.0178	0.00098529	5.041	0.0024615	488.2931339208553	18.865	0.24545	18.928	18.796	19.041	0.063307					7	4	2	0	0	0	0.027866	1	288	288		20.482	0	1	17081			28034	14773	19330	19371	32338	32338					0.0818697575632541
IRLIAALIY	9	Unmodified	_IRLIAALIY_					0	0	0			REV__ENSG00000198967|ENST00000641002|OR10Z1	REV__ENSG00000198967|ENST00000641002|OR10Z1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.325439453125	2	523.342052	1044.66955	0.25931	0.00013571	-3.4796	-0.001821	-3.2203	-0.0016853	523.3404051839717	79.267	0.45772	79.117	78.779	79.236	-0.15051					13	10	2	0	0	0	0.024412	1	9454	9454		40.573	6.4001	1	40750	+		28035	28533	19331	19372	32339	32339					0.14900373650425536
IRLLISAFRIW	11	Unmodified	_IRLLISAFRIW_					0	0	0			REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.7736511230469	3	463.290602	1386.84998	0.9536	0.00044179	4.4099	0.0020431	5.3635	0.0024849	463.2923162325323	18.263	0.24414	18.107	17.904	18.148	-0.15637					6	4	2	0	0	0	0.02484	1	287	287		17.167	7.5206	1	7330.2	+		28036	19338	19332	19373	32340	32340					0.17202472307258176
IRLMGKDEK	9	Unmodified	_IRLMGKDEK_					0	0	0		PFDN2|p.E129K|1|0.1|ENSG00000143256|chr1:161100763-161100763|C/T|missense_variant	PFDN2|p.E129K|1|0.1|ENSG00000143256|chr1:161100763-161100763|C/T|missense_variant	PFDN2|p.E129K|1|0.1|ENSG00000143256|chr1:161100763-161100763|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.7586059570312	2	545.307884	1088.60121	-0.38577	-0.00021037	0.35854	0.00019551	-0.027239	-1.4853E-05	545.3080010958706	25.721	0.4467	25.55	25.288	25.735	-0.17078					24	10	3	0	0	0	0.024374	1	1239	1239		49.442	0	1	427460			28037	18959	19333	19374	32341	32341					0.060457610082494284
IRLMIENP	8	Unmodified	_IRLMIENP_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.29351806640625	2	493.278595	984.542637	-0.24832	-0.00012249	-2.6367	-0.0013006	-2.885	-0.0014231	493.2772244244579	19.827	0.42339	19.708	19.543	19.967	-0.11872					13	8	2	0	0	0	0.027866	1	447	447		53.351	0	1	24104			28038	8602	19334	19375	32342	32342					0.04974704433777788
IRLMIENP	8	Unmodified	_IRLMIENP_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.29345703125	2	493.278595	984.542637	2.0265	0.00099962	-4.4744	-0.0022071	-2.4479	-0.0012075	493.2762840577095	19.709	0.52862	19.775	19.587	20.116	0.066195					18	10	2	0	0	0	0.027866	1	407	407		44.117	6.9577	1	18437			28039	8602	19334	19375	32343	32343					0.04974704433777788
IRLPPLPTPP	10	Unmodified	_IRLPPLPTPP_					0	0	0			REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8446044921875	2	550.844959	1099.67537	-0.55884	-0.00030783	0.44339	0.00024424	-0.11544	-6.3592E-05	550.8449713845737	82.665	0.86295	82.525	82.216	83.079	-0.14014					47	19	4	0	0	0	1.0271	1	9964	9964		42.396	8.2236	1	550490	+		28040	37128	19335	19376	32344	32344					0.12951472162058053
IRLPWSPK	8	Unmodified	_IRLPWSPK_					0	0	0		ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENST00000548190.1_1_12:53849722-53854210:+|nuORF	ENST00000548190.1_1_12:53849722-53854210:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8020935058594	2	498.803094	995.591636	0.003186	1.5892E-06	-1.1816	-0.00058939	-1.1784	-0.0005878	498.80236030386783	99.639	0.46973	99.65	99.357	99.827	0.010231					29	10	4	0	0	0	0.94517	1	12727	12727		45.952	0	1	329930			28041	16546	19336	19377	32345	32345					0.09366360785031702
IRLQELIMAP	10	Unmodified	_IRLQELIMAP_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.34521484375	2	592.347009	1182.67946	-1.6051	-0.00095076	-1.4325	-0.00084854	-3.0376	-0.0017993	592.3460238855494	61.315	1.0134	61.139	60.793	61.806	-0.1761					64	24	4	0	0	0	0.57594	1	6865	6865		79.713	2.395	1	2476300			28042	7162	19337	19378	32346	32346					0.09543193593503929
IRMARFKV	8	Unmodified	_IRMARFKV_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8442687988281	2	510.810396	1019.60624	0.065989	3.3708E-05	-3.8295	-0.0019561	-3.7635	-0.0019224	510.8096881463754	76.319	0.51499	76.331	76.015	76.53	0.011642					16	12	2	0	0	0	0.027866	1	9335	9335		33.516	0	1	276920			28043	4326	19338	19379	32347	32347					0.09722109661527156
IRMIAAADGLE	11	Unmodified	_IRMIAAADGLE_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	580.3054809570312	2	580.310623	1158.60669	0.45112	0.00026179	-3.5832	-0.0020794	-3.1321	-0.0018176	580.3086080276304	64.328	1.1134	64.374	64.081	65.195	0.045502					86	29	5	0	0	0	0.08209	1	7478	7478		112.41	16.596	1	4664000	+		28044	23540	19339	19380	32348	32348					0.033734398000660804
IRMIAAADGLE	11	Unmodified	_IRMIAAADGLE_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	580.310623	1158.60669	-0.449	-0.00026056	-2.6115	-0.0015155	-3.0605	-0.001776	580.3090541210503	64.58	0.54794	64.345	64.059	64.607	-0.2345	0.020357	-0.0001947	NaN	112.41	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656320	+		28045	23540	19339	19380							0.033734398000660804
IRMIAAADGLE	11	Unmodified	_IRMIAAADGLE_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	580.310623	1158.60669	-0.88658	-0.00051449	-1.7401	-0.0010098	-2.6266	-0.0015243	580.3095069058512	64.523	0.63104	64.32	64.066	64.697	-0.20254	-0.0048895	0.00081671	NaN	112.41	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951130	+		28046	23540	19339	19380							0.033734398000660804
IRMIAAADGLE	11	Unmodified	_IRMIAAADGLE_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	580.310623	1158.60669	-1.0038	-0.0005825	-1.8566	-0.0010774	-2.8604	-0.0016599	580.3095264674855	64.561	0.74118	64.305	63.959	64.7	-0.25563	-0.019806	0.0006814	NaN	112.41	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	653680	+		28047	23540	19339	19380							0.033734398000660804
IRMKALTN	8	Unmodified	_IRMKALTN_					0	0	0			REV__ENSG00000104320|ENST00000265433|NBN	REV__ENSG00000104320|ENST00000265433|NBN	MSMS	OPSCC_39_ClassI_Rep-2	2	473.7781677246094	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.389	1	24.342	23.842	24.842	-0.047148								0	0	0	0.49603	1	1045	1045		55.504	0	1		+		28048	21432	19340	19381	32349	32349					0.06802124153625755
IRMVKPIL	8	Unmodified	_IRMVKPIL_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2830505371094	2	485.317523	968.620493	-0.85126	-0.00041313	-0.84811	-0.0004116	-1.6994	-0.00082474	485.31744310531013	21.515	0.38082	21.515	21.342	21.723	0					11	7	2	0	0	0	0.027866	1	671	671		35.201	6.9464	1	29834	+		28049	26715	19341	19382	32350	32350					0.13492762089822463
IRNAASLKV	9	Unmodified	_IRNAASLKV_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3034973144531	2	486.303458	970.592364	-0.23737	-0.00011543	-0.36501	-0.00017751	-0.60238	-0.00029294	486.3032593590347	47.428	1.5784	47.332	46.897	48.475	-0.096653					99	42	5	0	0	0	0.72875	1	4642	4642		44.117	3.5442	1	15954000			28050	9146	19342	19383	32351	32351					0.10589155434081476
IRNASTVCDL	10	Unmodified	_IRNASTVCDL_					0	0	0			REV__ENST00000440865.2_3_1:245026180-245026237:-|nuORF	REV__ENST00000440865.2_3_1:245026180-245026237:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2755737304688	2	546.279323	1090.54409	-1.0582	-0.00057806	-4.1039	-0.0022419	-5.1621	-0.0028199	546.2759855617678	73.156	2.0983	73.156	72.698	74.796	0					105	51	4	0	0	0	0.66532	1	8882	8882		69.628	3.1983	1	23317000	+		28051	32534	19343	19384	32352	32352					0.002442937318846816
IRNDGVLLL	9	Unmodified	_IRNDGVLLL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.81097412109375	2	506.811116	1011.60768	-0.25593	-0.00012971	0.16682	8.4548E-05	-0.089102	-4.5158E-05	506.8110374060778	64.302	1.0749	64.074	63.74	64.815	-0.22774					54	26	4	0	0	0	0.12602	1	7301	7301		104.75	5.3716	1	2217500			28052	5282	19344	19385	32353	32353					0.10234022231293238
IRNDGVLLL	9	Unmodified	_IRNDGVLLL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.8109436035156	2	506.811116	1011.60768	-0.12925	-6.5504E-05	0.10913	5.5306E-05	-0.020121	-1.0198E-05	506.81103839753365	64.288	0.99091	64.096	63.757	64.748	-0.19243					49	24	4	0	0	0	0.29158	1	7310	7310		76.774	0	1	2467500			28053	5282	19344	19385	32354	32354					0.10234022231293238
IRNFPFDV	8	Unmodified	_IRNFPFDV_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.78179931640625	2	504.269084	1006.52362	-0.0039251	-1.9793E-06	1.9437	0.00098015	1.9398	0.00097817	504.77297753385704	47.576	0.17332	47.423	47.336	47.51	-0.15301					6	4	2	0	0	0	0.027866	1	4766	4766		38.806	20.544	1	83216			28054	19034	19345	19386	32355	32355					0.020614911343727726
IRNKISIQ	8	Unmodified	_IRNKISIQ_					0	0	0			REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.77691650390625	2	486.303458	970.592364	-0.28038	-0.00013635	3.9176	0.0019051	3.6372	0.0017688	486.3054888061927	37.354	0.67326	37.29	37.052	37.725	-0.063385					39	18	3	0	0	0	0.027866	1	3099	3099		51.335	0	1	793750	+		28055	27333	19346	19387	32356	32356					0.10589155434081476
IRNLMEKDPN	10	Unmodified	_IRNLMEKDPN_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.52447509765625	3	410.548412	1228.62341	0.13306	5.4627E-05	3.1368	0.0012878	3.2698	0.0013424	410.8841736062093	55.201	0.17606	54.995	54.904	55.08	-0.20613					6	4	2	0	0	0	0.03519	1	5883	5883		21.686	0	1	50176			28056	9192	19347	19388	32357	32357					0.018239406860402596
IRNNAAIV	8	Unmodified	_IRNNAAIV_					0	0	0			REV__ENSG00000133731|ENST00000256108|IMPA1	REV__ENSG00000133731|ENST00000256108|IMPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.76123046875	2	435.761426	869.5083	0.17215	7.5018E-05	-0.34635	-0.00015093	-0.1742	-7.5909E-05	435.7611006274392	34.175	0.89243	34.17	33.676	34.568	-0.0045624					41	22	3	0	0	0	0.65272	1	2512	2512		71.378	5.4805	1	1973400	+		28057	23389	19348	19389	32358	32358					0.06832624337187099
IRNNAAIV	8	Unmodified	_IRNNAAIV_					0	0	0			REV__ENSG00000133731|ENST00000256108|IMPA1	REV__ENSG00000133731|ENST00000256108|IMPA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	435.761426	869.5083	0.17215	7.5018E-05	-0.34635	-0.00015093	-0.1742	-7.5909E-05	435.7611006274392	34.175	0.89243	34.17	33.676	34.568	-0.0045624	-0.037363	-0.00049865	NaN	71.378	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1973400	+		28058	23389	19348	19389							0.06832624337187099
IRNPSSSL	8	Unmodified	_IRNPSSSL_					0	0	0			REV__nc|ENSG00000156504|Q7Z309-4|PABIR2	REV__nc|ENSG00000156504|Q7Z309-4|PABIR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.2427673339844	2	437.243067	872.47158	-0.12718	-5.5607E-05	0.34311	0.00015002	0.21594	9.4417E-05	437.24312439468343	33.976	1.0754	34.027	33.687	34.762	0.050255					44	26	2	0	0	0	0.35998	1	2442	2442		102.77	5.3007	1	2117800	+		28059	25079	19349	19390	32359	32359					0.03024327720618203
IRNRLTCRA	9	Unmodified	_IRNRLTCRA_					0	0	0			REV__ENST00000404338.7_1_19:47505195-47505501:+|nuORF	REV__ENST00000404338.7_1_19:47505195-47505501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.8157958984375	2	551.816741	1101.61893	-0.16757	-9.2469E-05	1.1837	0.00065321	1.0162	0.00056074	551.8172894574166	93.319	0.87872	93.319	93.009	93.888	0					51	20	4	0	0	0	0.4752	1	11862	11862		60.972	2.19	1	1093200	+		28060	31900	19350	19391	32360	32360					0.07218521053755467
IRNSLLESR	9	Unmodified	_IRNSLLESR_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3;nc|ENSG00000120645|Q9UPP2-2|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2677612304688	2	544.314554	1086.61456	-0.22636	-0.00012321	3.6669	0.0019959	3.4405	0.0018727	544.3167964949678	35.891	0.36657	35.693	35.476	35.843	-0.19829					13	10	2	0	0	0	0.023655	1	2727	2727		60.118	14.146	1	193920			28061	3826	19351	19392	32361	32361					0.07471335111858934
IRNVEPPLR	9	Unmodified	_IRNVEPPLR_					0	0	0			REV__SF3B6|p.R24*|1|0.37|ENSG00000115128|chr2:24074155-24074156|-/TA|frameshift_variant	REV__SF3B6|p.R24*|1|0.37|ENSG00000115128|chr2:24074155-24074156|-/TA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3268432617188	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.15366	1	3806	3806		98.629	2.4389	1	32648000	+		28062	22167	19352	19393	32362	32362					0.0977622935411091
IRNVEPPLR	9	Unmodified	_IRNVEPPLR_					0	0	0			REV__SF3B6|p.R24*|1|0.37|ENSG00000115128|chr2:24074155-24074156|-/TA|frameshift_variant	REV__SF3B6|p.R24*|1|0.37|ENSG00000115128|chr2:24074155-24074156|-/TA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3273315429688	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.10174	1	3743	3743		110.12	6.0631	1	35496000	+		28063	22167	19352	19393	32363	32363					0.0977622935411091
IRNVPKLL	8	Unmodified	_IRNVPKLL_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2608947753906	2	476.818744	951.622936	-0.28508	-0.00013593	-0.77335	-0.00036875	-1.0584	-0.00050468	476.81801740431604	28.147	0.1618	27.902	27.759	27.921	-0.24524					5	3	2	0	0	0	0.027866	1	1598	1598		14.664	0	1	52457	+		28064	21321	19353	19394	32364	32364					0.14518933819135782
IRPDHQSP	8	Unmodified	_IRPDHQSP_					0	0	0		SLITRK3|p.G354Vfs*35|1|0.23|ENSG00000121871|chr3:165189770-165189770|C/-|frameshift_variant	SLITRK3|p.G354Vfs*35|1|0.23|ENSG00000121871|chr3:165189770-165189770|C/-|frameshift_variant	SLITRK3|p.G354Vfs*35|1|0.23|ENSG00000121871|chr3:165189770-165189770|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2707214355469	2	475.246141	948.477728	0.39664	0.0001885	-0.35288	-0.00016771	0.043761	2.0797E-05	475.24580631403063	24.172	0.49924	24.25	24.048	24.547	0.078344					22	10	3	0	0	0	0.027866	1	958	958		38.806	0	1	159000			28065	37902	19354	19395	32365	32365					0.0014284595214348883
IRPEPFSLS	9	Unmodified	_IRPEPFSLS_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2835083007812	2	523.287474	1044.5604	-1.1901	-0.00062274	-3.5755	-0.001871	-4.7656	-0.0024938	523.2856534320678	37.942	0.86172	37.969	37.71	38.572	0.027275					68	24	3	0	0	0	0.16468	1	3090	3090		96.19	0.37527	1	7282300			28066	18305	19355	19396	32366	32366					0.03989742960266085
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2816467285156	2	502.282192	1002.54983	0.1365	6.8559E-05	-0.0052692	-2.6466E-06	0.13123	6.5913E-05	502.2820298472226	57.91	1.1799	57.91	57.68	58.86	0					71	31	3	0	0	0	0.15366	2	6526	6526;6537		98.629	5.4339	1	3328500			28067	18548	19356	19397	32367;32368	32367					0.0486576030583592
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.28173828125	2	502.282192	1002.54983	-0.72106	-0.00036217	1.0075	0.00050604	0.28643	0.00014387	502.282586518804	58.117	0.97614	57.942	57.684	58.66	-0.1749					44	26	3	0	0	0	0.2101	1	6540	6540		87.696	10.922	1	4183400			28068	18548	19356	19397	32369	32369					0.0486576030583592
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2818908691406	2	502.282192	1002.54983	-0.53333	-0.00026788	0.78091	0.00039224	0.24758	0.00012436	502.2824877771943	57.765	0.80029	57.861	57.575	58.376	0.095306					38	21	3	0	0	0	0.22902	2	6425	6425;6437		85.161	14.011	1	3867800			28069	18548	19356	19397	32370;32371	32370					0.0486576030583592
IRPHWMFVL	9	Unmodified	_IRPHWMFVL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF;ENST00000470890.1_1_1:27683440-27683647:-|nuORF	nc|ENSG00000142733|O95382-3|MAP3K6;ENST00000470890.1_1_1:27683440-27683647:-|nuORF	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	599.8104858398438	2	599.831329	1197.6481	-0.71114	-0.00042656	-0.77309	-0.00046372	-1.4842	-0.00089028	600.3311209661452	76.586	0.20615	76.597	76.446	76.653	0.011635					6	4	2	0	0	0	0.024541	1	9371	9371		24.203	5.9407	1	74491			28070	5587;14944	19357	19398	32372	32372					0.05718665350059382
IRPKDVPGTL	10	Unmodified	_IRPKDVPGTL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3277587890625	2	548.329673	1094.64479	-0.25643	-0.00014061	-2.5313	-0.001388	-2.7877	-0.0015286	548.3281272097943	18.162	0.54084	18.031	17.811	18.352	-0.13147					25	10	3	0	0	0	1.1246	1	239	239		23.523	0	1	380460			28071	9914	19358	19399	32373	32373					0.10125693777035849
IRPKFGHTLF	10	Unmodified	_IRPKFGHTLF_					0	0	0			REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.73486328125	3	405.904747	1214.69241	0.11656	4.7312E-05	-0.9178	-0.00037254	-0.80124	-0.00032523	405.90460510436714	22.333	0.69942	22.147	21.715	22.415	-0.18539					40	14	4	0	0	0	0.03519	1	790	790		26.063	20.062	1	243980	+		28072	19811	19359	19400	32374	32374					0.09365392767881531
IRPKKTPE	8	Unmodified	_IRPKKTPE_					0	0	0			REV__nc|ENSG00000170525|Q16875-3|PFKFB3	REV__nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2597961425781	2	484.798009	967.581465	-1.0741	-0.00052071	1.0279	0.0004983	-0.046207	-2.2401E-05	484.7984301990769	36.19	0.83578	36.19	35.849	36.685	0					66	23	4	0	0	0	0.027866	1	2900	2900		42.474	8.9589	1	2713000	+		28073	26483	19360	19401	32375	32375					0.09637753059803345
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2-YLPM1|1|fusion;ENSG00000137573|ENST00000402687|SULF1	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.8551025390625	2	525.855327	1049.6961	0.193	0.00010149	-0.17388	-9.1438E-05	0.019113	1.0051E-05	525.8550687122862	77.053	0.5423	76.785	76.424	76.966	-0.26807					32	12	4	0	0	0	0.80658	1	9161	9161		38.806	8.3025	1	817830			28074	9892	19361	19402	32376	32376					0.17324062541752028
IRPSHQHDL	9	Unmodified	_IRPSHQHDL_					0	0	0			REV__ENSG00000180263|ENST00000343958|FGD6	REV__ENSG00000180263|ENST00000343958|FGD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8449096679688	2	551.791247	1101.56794	0.49489	0.00027307	1.8631	0.0010281	2.358	0.0013011	551.7920863978563	82.919	1.168	82.699	82.217	83.385	-0.22015					68	26	4	0	0	0	0.024506	1	9971	9971		30.504	6.3009	1	606340	+		28075	27325	19362	19403	32377	32377					0.02121895280561148
IRPTASYG	8	Unmodified	_IRPTASYG_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7317810058594	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	0.96719	1	12330	12330		42.474	3.6683	1	2327700	+		28076	25129	19363	19404	32378	32378					0.012929426918958598
IRPTASYG	8	Unmodified	_IRPTASYG_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.73162841796875	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	1.0338	1	12251	12251		31.955	2.8053	1	1517800	+		28077	25129	19363	19404	32379	32379					0.012929426918958598
IRPVMSAPD	9	Unmodified	_IRPVMSAPD_					0	0	0			REV__FAT1-MTNR1A|1|fusion	REV__FAT1-MTNR1A|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2587585449219	2	493.260402	984.506251	0.38293	0.00018889	-0.67859	-0.00033472	-0.29566	-0.00014584	493.2600460818911	41.535	0.84045	41.535	41.016	41.856	0					56	23	3	0	0	0	0.35646	1	3749	3749		68.787	5.4806	1	2490900	+		28078	36021	19364	19405	32380	32380					0.013378275370541814
IRPWSETK	8	Unmodified	_IRPWSETK_					0	0	0			REV__nc|ENSG00000197345|Q7Z2W9-2|MRPL21	REV__nc|ENSG00000197345|Q7Z2W9-2|MRPL21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7958068847656	2	508.779816	1015.54508	0.35424	0.00018023	2.8254	0.0014375	3.1796	0.0016177	508.7810604249772	21.555	0.62484	21.378	20.967	21.591	-0.17721					26	9	3	0	0	0	0.027866	1	643	643		35.618	3.6634	1	188070	+		28079	28293	19365	19406	32381	32381					0.03792876163095116
IRPYHALLL	9	Unmodified	_IRPYHALLL_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3345336914062	2	548.337301	1094.66005	-0.54546	-0.0002991	-4.135	-0.0022674	-4.6805	-0.0025665	548.3350153282292	43.616	0.97869	43.647	43.191	44.17	0.030827					84	26	5	0	0	0	0.44472	1	4061	4061		62.978	5.1671	1	8497200			28080	2472	19366	19407	32382	32382					0.11650605364911826
IRQALSRAR	9	Unmodified	_IRQALSRAR_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;ENSG00000174791|ENST00000311320|RIN1;nc|ENSG00000174791|Q13671-2|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8472900390625	2	535.830706	1069.64686	-0.60554	-0.00032447	1.9463	0.0010429	1.3407	0.0007184	535.8315559977179	47.245	0.31927	47.245	47.111	47.43	0					15	8	2	0	0	0	0.024523	1	4733	4733		29.15	2.4566	1	298260			28081	8497	19367	19408	32383	32383					0.11482167305484836
IRQALSRAR	9	Unmodified	_IRQALSRAR_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;ENSG00000174791|ENST00000311320|RIN1;nc|ENSG00000174791|Q13671-2|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.830706	1069.64686	-1.2963	-0.00069458	2.4461	0.0013107	1.1498	0.00061611	535.8317990056638	47.205	0.42053	47.264	47.069	47.489	0.059097	0.0094185	0.00028179	NaN	29.15	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300730			28082	8497	19367	19408							0.11482167305484836
IRQEPVLF	8	Unmodified	_IRQEPVLF_					0	0	0			REV__ENSG00000116194|ENST00000234816|ANGPTL1	REV__ENSG00000116194|ENST00000234816|ANGPTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2923889160156	2	501.292559	1000.57057	-0.14252	-7.1443E-05	-0.49453	-0.00024791	-0.63705	-0.00031935	501.2922924646224	45.541	1.3563	45.442	44.828	46.184	-0.099445					111	37	4	0	0	0	0.52467	1	4349	4349		83.287	0	1	25794000	+		28083	22266	19368	19409	32384	32384					0.07030350685511166
IRQEPVLF	8	Unmodified	_IRQEPVLF_					0	0	0			REV__ENSG00000116194|ENST00000234816|ANGPTL1	REV__ENSG00000116194|ENST00000234816|ANGPTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2928466796875	2	501.292559	1000.57057	-0.18343	-9.1952E-05	-0.45726	-0.00022922	-0.64069	-0.00032117	501.29230887612056	45.679	1.1477	45.427	44.905	46.053	-0.25252					104	31	4	0	0	0	0.52467	1	4319	4319		83.287	0	1	22111000	+		28084	22266	19368	19409	32385	32385					0.07030350685511166
IRQESASL	8	Unmodified	_IRQESASL_					0	0	0			REV__ENST00000315302.6_1_4:183063631-183064075:-|nuORF	REV__ENST00000315302.6_1_4:183063631-183064075:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2301025390625	2	452.248349	902.482145	-0.23583	-0.00010666	-3.2517	-0.0014706	-3.4876	-0.0015773	452.2450468026585	26.763	0.33165	26.74	26.611	26.943	-0.023087					11	7	2	0	0	0	0.027866	1	1377	1377		133.81	4.13	1	40528	+		28085	30264	19369	19410	32386	32386					0.027003103750416813
IRQHKFSSM	9	Unmodified	_IRQHKFSSM_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7977905273438	2	567.29785	1132.58115	-1.5019	-0.00085204	4.2992	0.0024389	2.7972	0.0015869	567.3001305485458	83.22	0.68172	83.246	82.745	83.427	0.026558					32	15	3	0	0	0	0.024457	1	10316	10316		45.952	0	1	347800	+		28086	20974	19370	19411	32387	32387					0.020160100682915072
IRQHMLVVKQY	11	Unmodified	_IRQHMLVVKQY_					0	0	0			REV__ENST00000370474.3_1_6:71289173-71289251:+|nuORF	REV__ENST00000370474.3_1_6:71289173-71289251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3000183105469	3	472.271101	1413.79147	1.1604	0.00054803	1.5468	0.0007305	2.7072	0.0012785	472.271788154193	18.129	0.39262	17.972	17.805	18.197	-0.15637					21	7	4	0	0	0	0.024801	1	276	276		29.551	19.905	1	106750	+		28087	31128	19371	19412	32388	32388					0.10113047670483866
IRQHNVLNS	9	Unmodified	_IRQHNVLNS_					0	0	0			REV__ENSG00000196267|ENST00000682614|ZNF836	REV__ENSG00000196267|ENST00000682614|ZNF836	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2898559570312	2	540.799072	1079.58359	-0.73855	-0.00039941	-0.59203	-0.00032017	-1.3306	-0.00071958	540.7988876372676	54.125	0.48576	54.125	53.942	54.428	0					32	13	3	0	0	0	0.024523	1	5867	5867		21.96	0	1	1145000	+		28088	28155	19372	19413	32389	32389					0.04698181797584766
IRQHPKIL	8	Unmodified	_IRQHPKIL_					0	0	0			REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6	REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7975769042969	2	502.821818	1003.62908	-0.11723	-5.8944E-05	-1.1823	-0.00059447	-1.2995	-0.00065341	502.82072123765477	42.616	0.35744	42.477	42.345	42.702	-0.13929					10	9	2	0	0	0	0.027866	1	3934	3934		20.482	6.7065	1	45472	+		28089	19880	19373	19414	32390	32390					0.12741452050659063
IRQIDESKL	9	Unmodified	_IRQIDESKL_					0	0	0			REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3162231445312	2	551.316763	1100.61897	-1.0497	-0.00057871	0.23309	0.00012851	-0.81659	-0.0004502	551.3167087193317	44.061	0.70056	43.817	43.52	44.22	-0.2444					51	18	4	0	0	0	0.5973	1	4074	4074		52.937	2.9032	1	2602800	+		28090	20609	19374	19415	32391	32391					0.07268799534745085
IRQKCPAE	8	Unmodified	_IRQKCPAE_					0	0	0			REV__ZNF417|p.F234Sfs*246|1|0.18|ENSG00000173480|chr19:57909577-57909577|A/-|frameshift_variant	REV__ZNF417|p.F234Sfs*246|1|0.18|ENSG00000173480|chr19:57909577-57909577|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7546081542969	2	472.752744	943.490935	0.91414	0.00043216	0.50242	0.00023752	1.4166	0.00066968	472.7530210484187	39.59	1.3676	39.59	39.219	40.587	0					103	38	5	0	0	0	0.74904	1	3404	3404		63.306	1.1989	1	14314000	+		28091	26776	19375	19416	32392	32392					0.01692960739865157
IRQLPSIE	8	Unmodified	_IRQLPSIE_					0	0	0		ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MSMS	OPSCC_39_ClassI_Rep-2	2	478.2815246582031	2	478.282192	954.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.748	1	50.598	50.098	51.098	-0.14916								0	0	0	0.44619	1	5308	5308		60.972	0	1				28092	4233	19376	19417	32393	32393					0.0707376030584328
IRQLVAPSLIY	11	Unmodified	_IRQLVAPSLIY_					0	0	0			REV__ENSG00000173540|ENST00000308388|GMPPB	REV__ENSG00000173540|ENST00000308388|GMPPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.91168212890625	3	424.927329	1271.76016	-0.57702	-0.00024519	-4.1521	-0.0017643	-4.7291	-0.0020095	424.9243732891468	39.33	0.35506	39.353	39.17	39.526	0.023727					17	9	2	0	0	0	0.024774	1	3287	3287		44.639	0	1	151370	+		28093	26782	19377	19418	32394	32394					0.1351479790803296
IRRCLLSFV	9	Unmodified	_IRRCLLSFV_					0	0	0		ENST00000393441.8_2_10:103313048-103313144:+|nuORF	ENST00000393441.8_2_10:103313048-103313144:+|nuORF	ENST00000393441.8_2_10:103313048-103313144:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.83154296875	2	553.828786	1105.64302	-0.33257	-0.00018418	2.3882	0.0013226	2.0556	0.0011384	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.80658	1	10813	10813		38.806	1.647	1	6921700			28094	13448	19378	19419	32395	32395					0.09442361487435846
IRRHIVLN	8	Unmodified	_IRRHIVLN_					0	0	0			REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF	REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8442687988281	2	510.824892	1019.63523	0.068744	3.5116E-05	-1.8632	-0.00095178	-1.7945	-0.00091666	510.82437399459	76.149	0.59637	76.161	76.015	76.611	0.011635					20	14	2	0	0	0	0.027866	1	9335	9335		40.573	7.057	1	387630	+		28095	34623	19379	19420	32396	32396					0.12619970282162285
IRRKPLFYT	9	Unmodified	_IRRKPLFYT_					0	0	0		ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.3591918945312	2	597.361308	1192.70806	-0.33407	-0.00019956	-4.0302	-0.0024075	-4.3643	-0.002607	597.3587791150173	98.823	1.5113	98.654	98.154	99.666	-0.16862					108	35	4	0	0	0	0.98128	1	12221	12221		24.203	3.2558	1	2695800			28096	6835	19380	19421	32397	32397					0.11941679284927886
IRRQIQFDFNI	11	Unmodified	_IRRQIQFDFNI_					0	0	0			REV__ENST00000335647.9_1_6:149922760-149922823:-|nuORF	REV__ENST00000335647.9_1_6:149922760-149922823:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.7881164550781	3	483.936887	1448.78883	-0.31226	-0.00015111	-0.26325	-0.00012739	-0.5755	-0.00027851	484.2707258719293	43.087	0.49899	42.85	42.6	43.099	-0.23736					32	12	4	0	0	0	0.024851	1	3900	3900		9.6461	3.6451	1	455720	+		28097	30534	19381	19422	32398	32398					0.08238915537185676
IRRRGRPS	8	Unmodified	_IRRRGRPS_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.77166748046875	2	499.309941	996.605329	-1.4498	-0.0007239	3.6991	0.001847	2.2492	0.0011231	499.3117563517855	28.931	0.47543	28.686	28.406	28.881	-0.24524					13	10	2	0	0	0	0.027866	1	1702	1702		24.203	0	1	46012	+		28098	20046	19382	19423	32399	32399					0.1068903133684671
IRRSHLYE	8	Unmodified	_IRRSHLYE_					0	0	0			REV__ENSG00000006062|ENST00000344686|MAP3K14	REV__ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2959594726562	2	537.296165	1072.57778	-1.443	-0.00077534	0.30136	0.00016192	-1.1417	-0.00061342	537.2963379348083	37.75	1.0038	37.75	37.195	38.199	0					85	28	4	0	0	0	0.87148	1	3115	3115		53.351	2.016	1	14350000	+		28099	19821	19383	19424	32400	32400					0.044390832859335205
IRRSLPATL	9	Unmodified	_IRRSLPATL_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC;ENST00000507638.1_1_4:177610796-177650693:-|nuORF	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.824462890625	2	513.824558	1025.63456	-1.07	-0.00054978	0.6728	0.0003457	-0.39717	-0.00020408	513.8250496412749	39.615	0.83077	39.509	39.191	40.022	-0.10654					81	22	5	0	0	0	0.50848	2	3428	3405;3428		58.782	6.1195	1	10422000			28100	6146	19384	19425	32401;32402	32402					0.12277130842471706
IRRYRRQWKGR	11	Unmodified	_IRRYRRQWKGR_					0	0	0			REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	REV__sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.8300170898438	3	525.646553	1573.91783	-0.2527	-0.00013283	-2.9279	-0.001539	-3.1806	-0.0016719	525.6450131632171	17.246	0.25274	17.039	16.863	17.116	-0.20669					6	4	2	0	0	0	0.024873	1	153	153		9.6461	4.2332	1	28273	+		28101	37537	19385	19426	32403	32403					0.1538273501059848
IRSATLDI	8	Unmodified	_IRSATLDI_					0	0	0			REV__ENSG00000184999|ENST00000332793|SLC22A10	REV__ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.76116943359375	2	444.761092	887.507631	-0.22439	-9.9799E-05	-0.059642	-2.6526E-05	-0.28403	-0.00012633	444.7610742859798	23.909	1.2509	23.729	23.477	24.728	-0.17989					54	28	4	0	0	0	0.33369	1	993	993		106.42	7.0402	1	5389400	+		28102	27720	19386	19427	32404	32404					0.059377848974691005
IRSATLDI	8	Unmodified	_IRSATLDI_					0	0	0			REV__ENSG00000184999|ENST00000332793|SLC22A10	REV__ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	444.761092	887.507631	2.1151	0.00094071	-2.0318	-0.00090365	0.08332	3.7058E-05	444.76008717017885	23.963	0.53261	23.782	23.539	24.072	-0.18089	-0.017667	-0.0014155	NaN	106.42	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243680	+		28103	27720	19386	19427							0.059377848974691005
IRSCPKTEISP	11	Unmodified	_IRSCPKTEISP_					0	0	0			REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	REV__ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	615.82958984375	2	615.82918	1229.64381	0.25455	0.00015676	0.29637	0.00018251	0.55092	0.00033927	615.8292512725548	98.587	1.4271	98.597	98.19	99.617	0.010231					87	32	3	0	0	0	0.99129	1	12588	12588		38.754	0.94209	1	911620	+		28104	30362	19387	19428	32405	32405					0.03817111345824742
IRSDAVALV	9	Unmodified	_IRSDAVALV_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MSMS	OPSCC_40_ClassI_Rep-1	4	472.2821960449219	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.649	1	50.538	50.038	51.038	-0.11163								0	0	0	0.13281	1	5162	5162		85.161	5.4482	1				28105	6877	19388	19429	32406	32406					0.07625760305847962
IRSDQRPGSI	10	Unmodified	_IRSDQRPGSI_					0	0	0			REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.8104858398438	2	564.809636	1127.60472	0.60499	0.0003417	1.6225	0.0009164	2.2275	0.0012581	564.8104336485193	107.05	0.6187	107.05	106.81	107.43	0					38	16	3	0	0	0	1.118	1	13792	13792		30.318	1.1477	1	140810	+		28106	22207	19389	19430	32407	32407					0.04602147106470511
IRSELVKQFK	10	Unmodified	_IRSELVKQFK_					0	0	0			REV__ENSG00000129988|ENST00000217407|LBP	REV__ENSG00000129988|ENST00000217407|LBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.3759155273438	2	624.377155	1246.73976	-0.20761	-0.00012963	4.3634	0.0027244	4.1558	0.0025948	624.3798605066477	100.67	0.51039	100.66	100.38	100.89	-0.0054398					22	12	2	0	0	0	1.089	1	12811	12811		34.173	1.3601	1	490580	+		28107	23070	19390	19431	32408	32408					0.12625627248212368
IRSETFTEF	9	Unmodified	_IRSETFTEF_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2864990234375	2	565.279846	1128.54514	-0.51335	-0.00029019	-1.0564	-0.00059713	-1.5697	-0.00088732	565.2793960904643	67.13	0.74323	67.13	67.049	67.792	0					34	18	2	0	0	0	0.024541	1	7994	7994		16.473	0	1	474290	+		28108	24140	19391	19432	32409	32409					-0.013991686275630855
IRSIHVKR	8	Unmodified	_IRSIHVKR_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.8248291015625	2	504.824892	1007.63523	4.1468	0.0020934	-4.0341	-0.0020365	0.11269	5.689E-05	504.82270345210975	17.645	0.43945	17.395	17.179	17.619	-0.25049					19	8	4	0	0	0	1.0106	1	177	177		35.618	5.1146	1	267580			28109	1881	19392	19433	32410	32410					0.13171970282166967
IRSLGVALL	9	Unmodified	_IRSLGVALL_					0	0	0			REV__ENST00000590639.1_1_17:42152067-42152649:+|nuORF	REV__ENST00000590639.1_1_17:42152067-42152649:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.3092346191406	2	471.310752	940.606951	0.8435	0.00039755	-3.8516	-0.0018153	-3.0081	-0.0014178	471.30888240120373	17.351	1.1935	17.208	17.048	18.241	-0.14278					46	24	4	0	0	0	0.85329	1	137	137		35.618	0	1	1134700	+		28110	24075	19393	19434	32411	32411					0.13427227582224077
IRSLKTLTT	9	Unmodified	_IRSLKTLTT_					0	0	0		ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.274169921875	2	516.824224	1031.63389	0.32996	0.00017053	2.9052	0.0015015	3.2351	0.001672	516.8254604201329	79.509	1.1239	79.29	78.873	79.997	-0.21922					49	26	2	0	0	0	0.024466	1	9577	9577		47.657	20.964	1	140100			28111	15352	19394	19435	32412	32412					0.11934291402735653
IRSLKTLTT	9	Unmodified	_IRSLKTLTT_					0	0	0		ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.824224	1031.63389	-0.56599	-0.00029252	5.0441	0.0026069	4.4781	0.0023144	516.825926176934	79.532	1.0847	79.532	78.91	79.994	0	0.093007	0.0016193	NaN	47.657	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105280			28112	15352	19394	19435							0.11934291402735653
IRSLKTLTT	9	Unmodified	_IRSLKTLTT_					0	0	0		ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.824224	1031.63389	-1.1673	-0.00060327	4.9912	0.0025796	3.824	0.0019763	516.8261712887629	79.729	0.91889	79.557	79.069	79.987	-0.17226	0.11809	0.0015646	NaN	47.657	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126030			28113	15352	19394	19435							0.11934291402735653
IRSLKTLTT	9	Unmodified	_IRSLKTLTT_					0	0	0		ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.824224	1031.63389	-0.74472	-0.00038489	5.2333	0.0027047	4.4886	0.0023198	516.8259817247321	79.56	0.70293	79.578	79.233	79.936	0.018677	0.13963	0.0018148	NaN	47.657	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125780			28114	15352	19394	19435							0.11934291402735653
IRSPIKMS	8	Unmodified	_IRSPIKMS_					0	0	0			REV__FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	REV__FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2534484863281	2	466.273312	930.532072	-0.69833	-0.00032561	1.0218	0.00047646	0.32351	0.00015084	466.27312792646745	26.918	0.42689	26.761	26.503	26.93	-0.15664					18	9	3	0	0	0	0.027866	1	1384	1384		49.442	6.9671	1	107660	+		28115	20693	19395	19436	32413	32413					0.06402721779340936
IRSPSVAQL	9	Unmodified	_IRSPSVAQL_					0	0	0			REV__ENSG00000138381|ENST00000260952|ASNSD1	REV__ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7886962890625	2	485.787641	969.56073	-0.16413	-7.9734E-05	-0.66614	-0.0003236	-0.83028	-0.00040334	485.7873435397639	47.002	1.6887	47.002	46.09	47.779	0					121	47	5	0	0	0	0.10174	1	4682	4682		110.12	7.3465	1	8122600	+		28116	23848	19396	19437	32414	32414					0.07473162680128098
IRSPSVAQL	9	Unmodified	_IRSPSVAQL_					0	0	0			REV__ENSG00000138381|ENST00000260952|ASNSD1	REV__ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.78826904296875	2	485.787641	969.56073	0.28557	0.00013872	-1.1426	-0.00055508	-0.85708	-0.00041636	485.78705368688804	47.147	1.1927	46.994	46.445	47.637	-0.15301					74	32	4	0	0	0	0.086035	1	4694	4694		115.49	24.717	1	7224800	+		28117	23848	19396	19437	32415	32415					0.07473162680128098
IRSTGRFMW	9	Unmodified	_IRSTGRFMW_					0	0	0		nc|ENSG00000171208|Q8NC67-3|NETO2;ENSG00000171208|ENST00000562435|NETO2	nc|ENSG00000171208|Q8NC67-3|NETO2	nc|ENSG00000171208|Q8NC67-3|NETO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.3165893554688	2	577.300393	1152.58623	-0.15022	-8.6721E-05	-0.13728	-7.9252E-05	-0.2875	-0.00016597	577.3006285401424	71.853	0.36262	71.591	71.48	71.843	-0.262					12	8	2	0	0	0	0.024495	1	8445	8445		42.396	11.892	1	90738			28118	8128	19397	19438	32416	32416					0.016043139308976606
IRSVIKQGGTK	11	Unmodified	_IRSVIKQGGTK_					0	0	0		ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.866954	1185.71936	-0.35322	-0.00020977	-1.2739	-0.00075653	-1.6271	-0.0009663	593.8665341571867	35.79	0.16466	35.592	35.509	35.674	-0.19829					7	4	2	0	0	0	0.024748	1	2740	2740		37.508	3.3356	1	257250			28119	7053	19398	19439	32417	32417					0.1339245658841719
IRTAMFKSL	9	Unmodified	_IRTAMFKSL_					0	0	0			REV__ENST00000464415.1_1_2:33817123-33824435:-|nuORF	REV__ENST00000464415.1_1_2:33817123-33824435:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2711791992188	2	533.807519	1065.60049	-0.11825	-6.3124E-05	1.4187	0.00075733	1.3005	0.0006942	533.8077102806042	59.147	0.58038	59.233	58.921	59.501	0.085686					37	15	3	0	0	0	0.024288	1	6700	6700		52.937	0	1	1593600	+		28120	32973	19399	19440	32418	32418					0.07030966359207014
IRTEPILP	8	Unmodified	_IRTEPILP_					0	0	0		ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.7689514160156	2	469.78711	937.559667	-1.0822	-0.00050841	-0.45589	-0.00021417	-1.5381	-0.00072259	469.78680493577224	65.042	0.45499	64.78	64.572	65.027	-0.2626					18	11	2	0	0	0	0.027866	1	7670	7670		19.36	0	1	162150			28121	1398	19400	19441	32419	32419					0.08838948311222339
IRTKKPSHIQ	10	Unmodified	_IRTKKPSHIQ_					0	0	0			REV__ENST00000545629.5_1_12:1086082-1099186:-|nuORF	REV__ENST00000545629.5_1_12:1086082-1099186:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.36669921875	2	604.367121	1206.71969	-1.4686	-0.00088758	0.85378	0.00051599	-0.61484	-0.00037159	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.1295	1	13266	13266		9.7057	0	1	4767200	+		28122	34825	19401	19442	32420	32420					0.12459876308275852
IRTKKPSHIQ	10	Unmodified	_IRTKKPSHIQ_					0	0	0			REV__ENST00000545629.5_1_12:1086082-1099186:-|nuORF	REV__ENST00000545629.5_1_12:1086082-1099186:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.3667602539062	2	604.367121	1206.71969	-0.25622	-0.00015485	-0.39433	-0.00023832	-0.65055	-0.00039317	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	1.0814	1	12867	12867		30.318	0	1	4809400	+		28123	34825	19401	19442	32421	32421					0.12459876308275852
IRTNPHQSA	9	Unmodified	_IRTNPHQSA_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2694702148438	2	512.270147	1022.52574	-0.064022	-3.2797E-05	1.8639	0.00095485	1.7999	0.00092205	512.2708564123549	104.09	1.5978	104.09	103.57	105.16	0.0031357					89	45	3	0	0	0	0.82115	1	13307	13307		37.812	1.3648	1	332150	+		28124	25847	19402	19443	32422	32422					0.015379198721802823
IRTNPHQSA	9	Unmodified	_IRTNPHQSA_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2713012695312	2	512.270147	1022.52574	-1.3044	-0.00066821	2.7625	0.0014152	1.4581	0.00074695	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.93097	1	13281	13281		30.318	1.1477	1	5095800	+		28125	25847	19402	19443	32423	32423					0.015379198721802823
IRTNPHQSA	9	Unmodified	_IRTNPHQSA_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2713012695312	2	512.270147	1022.52574	0.53902	0.00027612	0.90867	0.00046548	1.4477	0.00074161	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	0.87816	2	13294	13284;13294		33.922	8.3476	1	5030900	+		28126	25847	19402	19443	32424;32425	32425					0.015379198721802823
IRTQGPGR	8	Unmodified	_IRTQGPGR_					0	0	0		ENST00000525028.6_1_11:804276-804384:-|nuORF	ENST00000525028.6_1_11:804276-804384:-|nuORF	ENST00000525028.6_1_11:804276-804384:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.7567138671875	2	442.756675	883.498798	-0.78944	-0.00034953	1.0727	0.00047495	0.28327	0.00012542	442.7570535464593	21.122	0.73802	21.122	20.753	21.491	0					25	14	2	0	0	0	1.0239	1	633	633		33.516	3.0119	1	465800			28127	16077	19403	19444	32426	32426					0.052388560516646976
IRVENHKLF	9	Unmodified	_IRVENHKLF_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.3056030273438	2	578.33529	1154.65603	-1.7143	-0.00099147	4.0681	0.0023527	2.3538	0.0013613	578.3375887387795	75.879	0.33659	75.879	75.696	76.032	0					13	8	3	0	0	0	0.024495	1	9310	9310		34.173	3.6689	1	240700	+		28128	20014	19404	19445	32427	32427					0.08488515871158597
IRVFFGRSL	9	Unmodified	_IRVFFGRSL_					0	0	0		ENST00000262746.5_1_1:45980259-45980563:-|nuORF	ENST00000262746.5_1_1:45980259-45980563:-|nuORF	ENST00000262746.5_1_1:45980259-45980563:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.29541015625	2	547.827101	1093.63965	-1.2605	-0.00069053	-3.3032	-0.0018096	-4.5636	-0.0025001	547.8255508677513	20.283	0.34232	20.283	20.078	20.42	0					11	6	2	0	0	0	0.024506	1	493	493		38.806	9.6566	1	14094			28129	11512	19405	19446	32428	32428					0.09657434705104606
IRVGNVDTL	9	Unmodified	_IRVGNVDTL_					0	0	0			REV__nc|ENSG00000037757|Q9BV20-2|MRI1	REV__nc|ENSG00000037757|Q9BV20-2|MRI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7826843261719	2	493.785099	985.555644	-0.012745	-6.2931E-06	-3.505	-0.0017307	-3.5178	-0.001737	493.7833271997216	82.724	0.94425	82.724	82.279	83.223	0					46	21	4	0	0	0	0.43973	1	10324	10324		63.306	0	1	800000	+		28130	20072	19406	19447	32429	32429					0.06228858817530636
IRVGPPVAP	9	Unmodified	_IRVGPPVAP_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.2821960449219	2	453.281995	904.549437	0.61756	0.00027993	-0.44752	-0.00020285	0.17004	7.7075E-05	453.28166035267503	55.836	1.7193	55.836	55.319	57.038	0					94	48	3	0	0	0	0.4855	1	6191	6191		60.294	0	1	1905500	+		28131	20233	19407	19448	32430	32430					0.0933438537664415
IRVGPPVAP	9	Unmodified	_IRVGPPVAP_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	453.281995	904.549437	0.61756	0.00027993	-0.44752	-0.00020285	0.17004	7.7075E-05	453.28166035267503	55.836	1.7193	55.836	55.319	57.038	0	0.055614	-0.00048246	NaN	60.294	94	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1905500	+		28132	20233	19407	19448							0.0933438537664415
IRVGPPVAP	9	Unmodified	_IRVGPPVAP_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	453.281995	904.549437	0.025761	1.1677E-05	-0.14275	-6.4704E-05	-0.11699	-5.3027E-05	453.281735115909	55.944	0.78503	55.728	55.372	56.157	-0.21607	-0.052715	-0.00020616	NaN	60.294	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106290	+		28133	20233	19407	19448							0.0933438537664415
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3250122070312	2	557.324391	1112.63423	-0.51046	-0.00028449	0.21736	0.00012114	-0.2931	-0.00016335	557.3244399488024	76.079	1.3808	75.807	75.502	76.882	-0.27266					81	33	4	0	0	0	0.077175	4	9004	9004;9015;9027;9039		118.74	25.548	1	6091900			28134	18075;4418;10836	19408	19449	32431;32432;32433;32434	32431					0.08241711122605011
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3240356445312	2	557.324391	1112.63423	-0.11891	-6.6273E-05	-0.16701	-9.3081E-05	-0.28593	-0.00015935	557.3242306645022	76.058	1.2569	75.8	75.477	76.734	-0.25865					85	30	5	0	0	0	0.094442	3	9038	9015;9038;9051		112.41	19.215	1	5483500			28135	18075;4418;10836	19408	19449	32435;32436;32437	32436					0.08241711122605011
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.32421875	2	557.324391	1112.63423	-0.076728	-4.2762E-05	-0.2475	-0.00013794	-0.32423	-0.0001807	557.324192551319	75.851	1.3778	75.675	75.351	76.728	-0.17548					88	33	4	0	0	0	0.079716	3	8976	8976;8988;8999		117.81	19.229	1	5983500			28136	18075;4418;10836	19408	19449	32438;32439;32440	32438					0.08241711122605011
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	557.324391	1112.63423	-0.41616	-0.00023194	1.3368	0.00074506	0.92068	0.00051312	557.3249748537769	75.899	0.98238	75.899	75.696	76.678	0	0.086223	0.001246	NaN	118.74	46	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107100			28137	18075;4418;10836	19408	19449							0.08241711122605011
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	557.324391	1112.63423	-0.67615	-0.00037684	1.5497	0.0008637	0.87358	0.00048687	557.3251098837502	76.11	1.0218	75.881	75.669	76.691	-0.22843	0.069112	0.0014832	NaN	118.74	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006500			28138	18075;4418;10836	19408	19449							0.08241711122605011
IRVLQSHISDT	11	Unmodified	_IRVLQSHISDT_					0	0	0		nc|ENSG00000290966|A6NCN2|KRT87P;ENSG00000170442|ENST00000423955|KRT86;CON__O43790	nc|ENSG00000290966|A6NCN2|KRT87P	nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.5463562011719	3	423.570093	1267.68845	0.12726	5.3903E-05	0.96832	0.00041015	1.0956	0.00046406	423.5703138778513	18.038	0.29732	17.831	17.664	17.962	-0.20669					7	5	2	0	0	0	0.024742	1	245	245		32.034	0.96598	1	19169		+	28139	18834	19409	19450	32441	32441					0.06531258483505553
IRVQAPHLSKV	11	Unmodified	_IRVQAPHLSKV_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.8776245117188	2	624.382771	1246.75099	-1.911	-0.0011932	-0.98953	-0.00061784	-2.9005	-0.001811	624.3822088007437	106.07	0.28349	105.94	105.81	106.09	-0.1328					17	10	2	0	0	0	1.0292	1	13207	13207		30.318	1.1477	1	123180			28140	5875	19410	19451	32442	32442					0.1374844934232442
IRVVEKAGP	9	Unmodified	_IRVVEKAGP_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7982177734375	2	484.798009	967.581465	0.55749	0.00027027	-1.5757	-0.00076388	-1.0182	-0.00049361	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.72875	1	6778	6778		44.117	1.7207	1	98413000			28141	1828	19411	19452	32443	32443					0.09637753059803345
IRVVRVERVS	10	Unmodified	_IRVVRVERVS_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.92291259765625	3	404.922689	1211.74624	-0.99259	-0.00040192	0.60463	0.00024483	-0.38797	-0.0001571	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.1151	1	1377	1377		18.531	1.063	1	42819000			28142	8829	19412	19453	32444	32444					0.14883565199579607
IRWLMRAAIKT	11	Unmodified	_IRWLMRAAIKT_					0	0	0			REV__ENSG00000168924|ENST00000302787|LETM1	REV__ENSG00000168924|ENST00000302787|LETM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.24554443359375	3	453.607825	1357.80165	0.47873	0.00021716	-3.1358	-0.0014224	-2.6571	-0.0012053	453.6063172466362	51.838	1.0497	51.72	50.889	51.939	-0.11876					44	27	2	0	0	0	0.024742	1	5306	5306		25.892	1.6599	1	149350	+		28143	26303	19413	19454	32445	32445					0.13705655395688154
IRWLMRAAIKT	11	Unmodified	_IRWLMRAAIKT_					0	0	0			REV__ENSG00000168924|ENST00000302787|LETM1	REV__ENSG00000168924|ENST00000302787|LETM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.2456970214844	3	453.607825	1357.80165	-1.8791	-0.00085236	-0.95625	-0.00043376	-2.8353	-0.0012861	453.6073677521765	52.094	0.99902	51.825	51.163	52.162	-0.26903					45	26	2	0	0	0	0.024726	1	5340	5340		38.714	12.822	1	223220	+		28144	26303	19413	19454	32446	32446					0.13705655395688154
IRWLMRAAIKT	11	Unmodified	_IRWLMRAAIKT_					0	0	0			REV__ENSG00000168924|ENST00000302787|LETM1	REV__ENSG00000168924|ENST00000302787|LETM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2456970214844	3	453.607825	1357.80165	0.70396	0.00031932	-3.7285	-0.0016913	-3.0246	-0.001372	453.60603176861883	51.857	0.94003	51.673	51.058	51.998	-0.18405					37	24	2	0	0	0	0.02476	1	5308	5308		32.034	12.004	1	199600	+		28145	26303	19413	19454	32447	32447					0.13705655395688154
IRWNPSPSL	9	Unmodified	_IRWNPSPSL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2470092773438	2	535.293091	1068.57163	-0.54117	-0.00028969	1.8173	0.00097278	1.2761	0.00068309	535.2932981692311	73.746	0.48475	73.555	73.237	73.722	-0.19027					30	11	4	0	0	0	0.023635	1	8658	8658		56.721	36.724	1	363120	+		28146	25017	19414	19455	32448	32448					0.04008565054414248
IRYKQVRGSA	10	Unmodified	_IRYKQVRGSA_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.343017578125	2	589.343646	1176.67274	-0.17644	-0.00010399	-0.76869	-0.00045303	-0.94514	-0.00055701	589.343094607947	95.492	2.0638	95.369	94.554	96.618	-0.12251					103	47	4	0	0	0	1.118	1	11818	11818		30.318	1.1682	1	959980	+		28147	21946	19415	19456	32449	32449					0.09147016757151505
IRYPFESWQ	9	Unmodified	_IRYPFESWQ_					0	0	0		ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.18304443359375	3	409.204862	1224.59276	-0.24372	-9.9733E-05	-0.14735	-6.0298E-05	-0.39108	-0.00016003	409.20430033110136	25.18	0.39564	24.953	24.752	25.148	-0.22683					10	8	2	0	0	0	0.024337	1	1180	1180		41.427	8.3872	1	76865			28148	4239	19416	19457	32450	32450					-0.010554696367080396
IRYTTGLL	8	Unmodified	_IRYTTGLL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.7667541503906	2	468.779285	935.544017	-0.53155	-0.00024918	-1.4739	-0.00069095	-2.0055	-0.00094013	468.77775042482125	35.288	0.21553	35.288	35.164	35.38	0					7	5	2	0	0	0	0.027866	1	2719	2719		31.955	0	1	62879	+		28149	29042	19417	19458	32451	32451					0.07366661794185347
ISAAEAGRL	9	Unmodified	_ISAAEAGRL_					0	0	0			REV__ENST00000316757.3_1_19:3760164-3761632:-|nuORF	REV__ENST00000316757.3_1_19:3760164-3761632:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.2705078125	2	444.250892	886.48723	-1.0819	-0.00048065	1.4312	0.00063579	0.34921	0.00015514	444.2515079248943	38.839	0.55818	38.866	38.651	39.21	0.027275					22	14	2	0	0	0	0.024344	1	3216	3216		54.776	19.576	1	286730	+		28150	30287	19418	19459	32452	32452					0.03944614237661881
ISAAEAGRL	9	Unmodified	_ISAAEAGRL_					0	0	0			REV__ENST00000316757.3_1_19:3760164-3761632:-|nuORF	REV__ENST00000316757.3_1_19:3760164-3761632:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	444.250892	886.48723	-0.41556	-0.00018461	-1.3483	-0.00059896	-1.7638	-0.00078358	444.2503929515897	39.03	0.39008	38.931	38.737	39.127	-0.098755	0.032265	-0.0020863	NaN	69.628	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100750	+		28151	30287	19418	19459							0.03944614237661881
ISAAIWIVV	9	Unmodified	_ISAAIWIVV_					0	0	0		ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7457580566406	2	486.299853	970.585153	-0.82705	-0.00040219	-3.9702	-0.0019307	-4.7972	-0.0023329	486.29770048556844	61.985	0.58057	61.807	61.536	62.117	-0.17781					19	14	2	0	0	0	0.023528	1	6985	6985		60.294	0	1	242440			28152	1638	19419	19460	32453	32453					0.09868422833653767
ISAAKKAK	8	Unmodified	_ISAAKKAK_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.R628Pfs*12|1|0.57|ENSG00000147234|chrX:107597659-107597660|-/C|frameshift_variant;ENST00000477796.1_1_X:106788951-106797806:+|nuORF	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	408.7688293457031	2	408.76872	815.522887	0.0094136	3.848E-06	0.16464	6.73E-05	0.17405	7.1148E-05	408.768648191925	35.381	0.62062	35.165	34.95	35.571	-0.21555					31	15	3	0	0	0	1.0338	1	2684	2684		31.955	6.5047	1	708700			28153	5949	19420	19461	32454	32454					0.10774696485327695
ISAAKKAK	8	Unmodified	_ISAAKKAK_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.R628Pfs*12|1|0.57|ENSG00000147234|chrX:107597659-107597660|-/C|frameshift_variant;ENST00000477796.1_1_X:106788951-106797806:+|nuORF	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	408.76872	815.522887	-0.056032	-2.2904E-05	-0.4144	-0.00016939	-0.47043	-0.0001923	408.7687290423114	35.413	0.86902	35.201	34.642	35.511	-0.21246	0.030145	-0.00056843	NaN	31.955	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	888270			28154	5949	19420	19461							0.10774696485327695
ISAAKKAK	8	Unmodified	_ISAAKKAK_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.R628Pfs*12|1|0.57|ENSG00000147234|chrX:107597659-107597660|-/C|frameshift_variant;ENST00000477796.1_1_X:106788951-106797806:+|nuORF	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	408.76872	815.522887	-0.51011	-0.00020852	0.51675	0.00021123	0.0066412	2.7147E-06	408.7687923588753	35.333	0.5407	35.147	34.911	35.452	-0.18675	-0.024311	0.00019282	NaN	31.955	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	994180			28155	5949	19420	19461							0.10774696485327695
ISAALEHK	8	Unmodified	_ISAALEHK_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7480163574219	2	434.747985	867.481417	-0.39117	-0.00017006	0.26586	0.00011558	-0.12531	-5.4476E-05	434.74823731018006	65.55	1.4355	65.278	64.786	66.221	-0.27283					145	38	5	0	0	0	0.50239	1	7686	7686		85.359	8.5128	1	100810000			28156	1774;107	19421	19462	32455	32455					0.04237515726003949
ISAAREYE	8	Unmodified	_ISAAREYE_					0	0	0		nc|ENSG00000198408|O60502-3|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ATP5C1-MGEA5|2|fusion;ATP5C1-MGEA5|1|fusion	nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-3|OGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2901611328125	2	469.732532	937.45051	-0.11503	-5.4036E-05	0.68712	0.00032276	0.57209	0.00026873	469.73265641005116	27.586	0.64271	27.573	27.277	27.92	-0.012983					33	16	3	0	0	0	0.027866	1	1563	1563		63.306	22.734	1	491740			28157	157	19422	19463	32456	32456					-0.02071682378903006
ISADLLPSTYI	11	Unmodified	_ISADLLPSTYI_					0	0	0		ENSG00000170734|ENST00000372236|POLH;nc|ENSG00000170734|Q9Y253-2|POLH	ENSG00000170734|ENST00000372236|POLH	ENSG00000170734|ENST00000372236|POLH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.2548828125	2	596.826629	1191.63871	-0.51847	-0.00030944	3.7607	0.0022445	3.2423	0.0019351	596.8285803789591	69.698	0.29132	69.447	69.358	69.649	-0.25063					9	6	2	0	0	0	0.024778	1	8125	8125		29.17	0	1	79430			28158	8071	19423	19464	32457	32457					0.05055130754885795
ISADLQIHDA	10	Unmodified	_ISADLQIHDA_					0	0	0			REV__nc|ENSG00000113595|P36406-3|TRIM23	REV__nc|ENSG00000113595|P36406-3|TRIM23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7532348632812	2	541.77747	1081.54039	-0.56643	-0.00030688	-2.8604	-0.0015497	-3.4268	-0.0018566	541.7754882133653	66.278	0.58596	66.036	65.789	66.375	-0.24145					27	14	3	0	0	0	0.03519	1	7591	7591		49.536	29.054	1	344260	+		28159	22077	19424	19465	32458	32458					0.0028794722968541464
ISADLQIHDA	10	Unmodified	_ISADLQIHDA_					0	0	0			REV__nc|ENSG00000113595|P36406-3|TRIM23	REV__nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.77747	1081.54039	-0.87869	-0.00047605	-2.4002	-0.0013004	-3.2789	-0.0017764	541.7759937172674	66.269	0.54913	66.056	65.794	66.343	-0.21327	0.021233	-8.0509E-05	NaN	33.922	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345900	+		28160	22077	19424	19465							0.0028794722968541464
ISADLQIHDA	10	Unmodified	_ISADLQIHDA_					0	0	0			REV__nc|ENSG00000113595|P36406-3|TRIM23	REV__nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.77747	1081.54039	-1.2149	-0.00065818	-1.581	-0.00085655	-2.7958	-0.0015147	541.7762856432636	66.257	0.65388	66.012	65.732	66.386	-0.24517	-0.022767	0.00080717	NaN	33.922	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325750	+		28161	22077	19424	19465							0.0028794722968541464
ISAETLLAL	9	Unmodified	_ISAETLLAL_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7771911621094	2	465.778951	929.543348	-0.64033	-0.00029825	-2.3092	-0.0010756	-2.9496	-0.0013738	465.7778115254298	80.676	2.2634	80.676	79.077	81.341	0					120	54	3	0	0	0	0.59099	2	10044	9996;10044		53.351	7.3995	1	1014200			28162	3678	19425	19466	32459;32460	32460					0.07575822354476713
ISAEYFSN	8	Unmodified	_ISAEYFSN_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|44|1|sense;REV__nc|ENSG999|O00370|L1_ORF2;REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2367248535156	2	465.713808	929.413062	-0.442	-0.00020585	2.1245	0.00098939	1.6825	0.00078355	465.71515275153564	29.509	0.43518	29.513	29.276	29.712	0.0031357					13	10	2	0	0	0	0.027866	1	1778	1778		31.53	0	1	38407	+		28163	37256;36277;36233	19426	19467	32461	32461					-0.054467736445189985
ISAGDSYAIY	10	Unmodified	_ISAGDSYAIY_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7769165039062	2	530.253297	1058.49204	-0.53276	-0.0002825	1.1372	0.00060303	0.60448	0.00032053	530.2536164209058	63.535	0.72895	63.343	62.988	63.717	-0.19243					55	18	4	0	0	0	0.03519	1	7170	7170		26.693	12.029	1	2578800	+		28164	25729	19427	19468	32462	32462					-0.03486546410226765
ISAHELTLEE	10	Unmodified	_ISAHELTLEE_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.310302734375	2	571.290411	1140.56627	-0.89875	-0.00051345	-2.428	-0.0013871	-3.3268	-0.0019006	571.2885854827346	73.394	0.25869	73.404	73.181	73.44	0.0096512					16	6	3	0	0	0	0.03519	1	8872	8872		26.693	0	1	329860			28165	6301	19428	19469	32463	32463					0.0016079668127986224
ISAIEKAQL	9	Unmodified	_ISAIEKAQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.77691650390625	2	486.78985	971.565146	-0.19064	-9.2801E-05	3.837	0.0018678	3.6464	0.001775	486.79154188286094	37.492	0.86935	37.492	37.233	38.102	0					47	24	4	0	0	0	0.021513	1	3129	3129		93.195	23.568	1	2662600			28166	4532	19429	19470	32464	32464					0.07822627103041668
ISAIPEQRW	9	Unmodified	_ISAIPEQRW_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;ENST00000588166.1_1_19:5135556-5138314:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2978515625	2	550.298373	1098.58219	-0.463	-0.00025479	-0.43202	-0.00023774	-0.89502	-0.00049253	550.2984425793329	54.696	0.77696	54.55	54.245	55.022	-0.14609					61	20	5	0	0	0	0.087669	3	5825	5825;5836;5850		114.89	47.401	1	8227900			28167	4258	19430	19471	32465;32466;32467	32465					0.03684547708826358
ISAIPEQRW	9	Unmodified	_ISAIPEQRW_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;ENST00000588166.1_1_19:5135556-5138314:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.2984008789062	2	550.298373	1098.58219	-0.11402	-6.2744E-05	-1.0446	-0.00057486	-1.1587	-0.00063761	550.2980495689052	54.812	0.7812	54.581	54.315	55.096	-0.23087					53	21	4	0	0	0	0.10464	4	5861	5827;5837;5848;5861		109.48	39.189	1	8387700			28168	4258	19430	19471	32468;32469;32470;32471	32471					0.03684547708826358
ISAIPEQRW	9	Unmodified	_ISAIPEQRW_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;ENST00000588166.1_1_19:5135556-5138314:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2979125976562	2	550.298373	1098.58219	0.74951	0.00041246	-1.7233	-0.00094832	-0.97378	-0.00053587	550.2976687810736	54.764	0.73434	54.558	54.279	55.013	-0.20613					50	19	4	0	0	0	0.056725	4	5824	5813;5824;5835;5848		126.24	57.456	1	8326500			28169	4258	19430	19471	32472;32473;32474;32475	32473					0.03684547708826358
ISAKNGVQW	9	Unmodified	_ISAKNGVQW_					0	0	0		nc|ENSG00000128463|Q5J8M3-2|EMC4	nc|ENSG00000128463|Q5J8M3-2|EMC4	nc|ENSG00000128463|Q5J8M3-2|EMC4	MSMS	OPSCC_40_ClassI_Rep-1	4	501.7731628417969	2	501.771991	1001.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.181	1	44.076	43.576	44.576	-0.10468								0	0	0	0.1211	1	4106	4106		87.754	5.5138	1				28170	18255	19431	19472	32476	32476					0.028725896460514377
ISAKTHNLN	9	Unmodified	_ISAKTHNLN_					0	0	0		ENSG00000151640|ENST00000338492|DPYSL4	ENSG00000151640|ENST00000338492|DPYSL4	ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7672119140625	2	499.274898	996.535243	-0.52389	-0.00026156	-1.011	-0.00050477	-1.5349	-0.00076633	499.2746554757151	40.505	0.94834	40.528	40.162	41.111	0.023006					43	26	4	0	0	0	0.024477	1	3528	3528		27.882	0	1	5376400			28171	6214	19432	19473	32477	32477					0.036836881577073655
ISALGRTFTRD	11	Unmodified	_ISALGRTFTRD_					0	0	0		ENST00000541086.5_1_14:103389974-103397014:+|nuORF;ENSG00000166126|ENST00000299155|AMN	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.8949279785156	3	412.894688	1235.66223	-0.37808	-0.00015611	0.066121	2.7301E-05	-0.31196	-0.00012881	412.8946700593217	30.513	1.0468	30.269	29.905	30.951	-0.24415					74	24	5	0	0	0	0.99147	1	1963	1963		38.714	1.1142	1	2205600			28172	7505	19433	19474	32478	32478					0.05382989312033715
ISAMPKNLN	9	Unmodified	_ISAMPKNLN_					0	0	0		nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.32421875	2	494.268227	986.521901	-1.5524	-0.00076731	-2.0482	-0.0010124	-3.6006	-0.0017797	494.2665862990632	38.874	0.61139	38.71	38.396	39.008	-0.16458					34	16	3	0	0	0	0.024477	1	3224	3224		27.882	0	1	549660			28173	5173	19434	19475	32479	32479					0.028101140541025416
ISAMPKNLN	9	Unmodified	_ISAMPKNLN_					0	0	0		nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.268227	986.521901	-0.59471	-0.00029394	-3.0867	-0.0015257	-3.6814	-0.0018196	494.2663091497849	38.887	0.74075	38.664	38.332	39.073	-0.22311	-0.055405	-0.00081195	NaN	27.882	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	700470			28174	5173	19434	19475							0.028101140541025416
ISAMPKNLN	9	Unmodified	_ISAMPKNLN_					0	0	0		nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	nc|ENSG00000137872|Q8NFY4-3|SEMA6D	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.268227	986.521901	-0.10307	-5.0946E-05	-3.602	-0.0017804	-3.7051	-0.0018313	494.26657331718746	38.895	0.7728	38.67	38.21	38.983	-0.2257	-0.049893	-0.0013214	NaN	27.882	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	670760			28175	5173	19434	19475							0.028101140541025416
ISAMRSVPL	9	Unmodified	_ISAMRSVPL_					0	0	0			REV__ENSG00000166897|ENST00000402918|ELFN2	REV__ENSG00000166897|ENST00000402918|ELFN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.77716064453125	2	487.278595	972.542637	0.12047	5.8701E-05	1.3543	0.0006599	1.4747	0.0007186	487.27932303730506	41.827	0.25653	41.597	41.394	41.651	-0.23029					14	6	3	0	0	0	0.024405	1	3709	3709		44.117	1.7207	1	1726300	+		28176	26076	19435	19476	32480	32480					0.0552670443378247
ISAMRSVPL	9	Unmodified	_ISAMRSVPL_					0	0	0			REV__ENSG00000166897|ENST00000402918|ELFN2	REV__ENSG00000166897|ENST00000402918|ELFN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.278595	972.542637	-0.32881	-0.00016022	2.8943	0.0014103	2.5655	0.0012501	487.2801289893795	41.832	0.22894	41.6	41.391	41.62	-0.23186	0.001516	0.00090426	NaN	51.335	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2679400	+		28177	26076	19435	19476							0.0552670443378247
ISAPPTTHII	10	Unmodified	_ISAPPTTHII_					0	0	0			REV__ENST00000492424.1_1_20:17487687-17492707:-|nuORF	REV__ENST00000492424.1_1_20:17487687-17492707:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3053588867188	2	525.303124	1048.5917	-0.41235	-0.00021661	0.16365	8.5968E-05	-0.2487	-0.00013064	525.3030711631365	65.62	0.65791	65.369	65.108	65.766	-0.25112					44	15	4	0	0	0	1.0271	1	7507	7507		42.396	1.618	1	1878000	+		28178	22855	19436	19477	32481	32481					0.06934315994362805
ISASKAVGW	9	Unmodified	_ISASKAVGW_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENST00000538236.1_1_12:123344649-123345071:+|nuORF;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.7552490234375	2	459.75581	917.497067	0.093915	4.3178E-05	-0.39831	-0.00018313	-0.3044	-0.00013995	459.7554895928003	45.764	0.49968	45.667	45.461	45.961	-0.096649					34	13	3	0	0	0	0.12914	1	4376	4376		104.06	18.697	1	2082400			28179	4267;4460	19437	19478	32482	32482					0.03501802243044949
ISASKAVGW	9	Unmodified	_ISASKAVGW_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENST00000538236.1_1_12:123344649-123345071:+|nuORF;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.7555236816406	2	459.75581	917.497067	-0.28506	-0.00013106	-0.37568	-0.00017272	-0.66075	-0.00030378	459.75541848688465	45.98	0.71088	45.719	45.451	46.162	-0.26118					45	18	4	0	0	0	0.062622	1	4391	4391		124.08	5.337	1	2473800			28180	4267;4460	19437	19478	32483	32483					0.03501802243044949
ISASKAVGW	9	Unmodified	_ISASKAVGW_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENST00000538236.1_1_12:123344649-123345071:+|nuORF;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.7550354003906	2	459.75581	917.497067	-0.72482	-0.00033324	-0.18557	-8.5318E-05	-0.91039	-0.00041856	459.7555255611286	45.873	0.65339	45.671	45.391	46.044	-0.20226					41	17	3	0	0	0	0.094442	1	4375	4375		112.41	19.215	1	2161500			28181	4267;4460	19437	19478	32484	32484					0.03501802243044949
ISASKAVGW	9	Unmodified	_ISASKAVGW_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENST00000538236.1_1_12:123344649-123345071:+|nuORF;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	459.75581	917.497067	0.15158	6.969E-05	-1.1006	-0.00050599	-0.94898	-0.0004363	459.75504065054514	45.963	0.41466	45.963	45.748	46.163	0	0.14393	-0.00059349	NaN	124.08	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650440			28182	4267;4460	19437	19478							0.03501802243044949
ISASKAVGW	9	Unmodified	_ISASKAVGW_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENST00000538236.1_1_12:123344649-123345071:+|nuORF;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	459.75581	917.497067	-0.80869	-0.0003718	0.10216	4.6967E-05	-0.70654	-0.00032483	459.75552387677845	46.046	0.49068	45.895	45.683	46.174	-0.15157	0.076044	0.00051242	NaN	124.08	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693960			28183	4267;4460	19437	19478							0.03501802243044949
ISASKAVGW	9	Unmodified	_ISASKAVGW_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENST00000538236.1_1_12:123344649-123345071:+|nuORF;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1;ENSG00000130787|ENST00000253083|HIP1R	ENSG00000127946|ENST00000336926|HIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	459.75581	917.497067	0.24166	0.00011111	-0.88813	-0.00040832	-0.64646	-0.00029722	459.7551530217575	45.947	0.47961	45.999	45.794	46.274	0.051395	0.17963	-0.00039816	NaN	124.08	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753120			28184	4267;4460	19437	19478							0.03501802243044949
ISASRPVGL	9	Unmodified	_ISASRPVGL_					0	0	0			REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.26910400390625	2	450.269084	898.523616	-0.67799	-0.00030528	0.39012	0.00017566	-0.28787	-0.00012962	450.269144272415	43.746	1.0146	43.746	43.367	44.382	0					78	28	5	0	0	0	0.23085	1	4142	4142		84.916	2.675	1	6173800	+		28185	20877	19438	19479	32485	32485					0.07029491134380805
ISASSLTSKW	10	Unmodified	_ISASSLTSKW_					0	0	0		ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	ENSG00000132436|ENST00000433017|FIGNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.291748046875	2	540.290214	1078.56587	-1.1598	-0.00062663	1.1469	0.00061966	-0.012908	-6.9742E-06	540.2907344600649	56.426	0.73768	56.201	55.806	56.544	-0.2248					27	15	2	0	0	0	0.47249	1	6102	6102		91.265	41.729	1	1280500			28186	4606	19439	19480	32486	32486					0.02973421752108152
ISATSSSRNW	10	Unmodified	_ISATSSSRNW_					0	0	0		ENST00000475696.5_1_2:220110350-220111398:+|nuORF;ENST00000409260.5_1_2:220110626-220111251:+|nuORF;ENST00000486813.1_1_2:220110626-220111851:+|nuORF;ENST00000409516.7_1_2:220110217-220112141:+|nuORF;ENST00000491697.1_1_2:220110217-220110827:+|nuORF;ENST00000409638.7_1_2:220110217-220111398:+|nuORF;ENST00000496443.5_1_2:220110461-220110827:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7724609375	2	554.772719	1107.53089	-0.038431	-2.132E-05	-0.020076	-1.1138E-05	-0.058507	-3.2458E-05	554.7726059035574	37.472	0.68452	37.279	36.966	37.651	-0.193					51	17	4	0	0	0	0.0059825	2	3024	3012;3024		177.3	61.811	1	2080100			28187	15068	19440	19481	32487;32488	32488					-0.01857821055864406
ISATSSSRNW	10	Unmodified	_ISATSSSRNW_					0	0	0		ENST00000475696.5_1_2:220110350-220111398:+|nuORF;ENST00000409260.5_1_2:220110626-220111251:+|nuORF;ENST00000486813.1_1_2:220110626-220111851:+|nuORF;ENST00000409516.7_1_2:220110217-220112141:+|nuORF;ENST00000491697.1_1_2:220110217-220110827:+|nuORF;ENST00000409638.7_1_2:220110217-220111398:+|nuORF;ENST00000496443.5_1_2:220110461-220110827:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.7730102539062	2	554.772719	1107.53089	-1.073	-0.00059525	0.98209	0.00054484	-0.090876	-5.0416E-05	554.7732123997113	37.436	0.80894	37.216	36.807	37.615	-0.2195					53	20	4	0	0	0	0.0011496	2	2999	2999;3009		190.62	94.432	1	2385700			28188	15068	19440	19481	32489;32490	32489					-0.01857821055864406
ISATSSSRNW	10	Unmodified	_ISATSSSRNW_					0	0	0		ENST00000475696.5_1_2:220110350-220111398:+|nuORF;ENST00000409260.5_1_2:220110626-220111251:+|nuORF;ENST00000486813.1_1_2:220110626-220111851:+|nuORF;ENST00000409516.7_1_2:220110217-220112141:+|nuORF;ENST00000491697.1_1_2:220110217-220110827:+|nuORF;ENST00000409638.7_1_2:220110217-220111398:+|nuORF;ENST00000496443.5_1_2:220110461-220110827:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.7728881835938	2	554.772719	1107.53089	-0.63247	-0.00035088	0.47664	0.00026443	-0.15583	-8.6448E-05	554.7728669108816	37.45	0.96805	37.241	36.685	37.653	-0.2092					62	24	4	0	0	0	0.0011496	3	2992	2983;2992;3007		190.62	85.876	1	2086000			28189	15068	19440	19481	32491;32492;32493	32492					-0.01857821055864406
ISAVGEPLY	9	Unmodified	_ISAVGEPLY_					0	0	0		ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.7556457519531	2	474.755475	947.496398	0.035675	1.6937E-05	0.19534	9.2739E-05	0.23102	0.00010968	474.7554187715032	70.296	0.52921	70.045	69.69	70.22	-0.25108					30	12	3	0	0	0	0.31247	1	8178	8178		73.975	8.1716	1	1379900			28190	38	19441	19482	32494	32494					0.020549628033336376
ISAVGEPLY	9	Unmodified	_ISAVGEPLY_					0	0	0		ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.75592041015625	2	474.755475	947.496398	0.16917	8.0315E-05	0.10186	4.8358E-05	0.27103	0.00012867	474.75538533122915	70.231	0.52457	70.016	69.688	70.213	-0.21425					35	12	4	0	0	0	0.31247	1	8166	8166		73.975	10.668	1	1573500			28191	38	19441	19482	32495	32495					0.020549628033336376
ISAVGEPLY	9	Unmodified	_ISAVGEPLY_					0	0	0		ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	ADGRV1|p.V2429I|1|0.27|ENSG00000164199|chr5:90694041-90694041|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.755475	947.496398	0.11173	5.3044E-05	0.10384	4.93E-05	0.21557	0.00010234	474.7554030541313	70.35	0.44796	70.079	69.784	70.232	-0.27184	0.03193	-2.779E-05	NaN	73.975	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044600			28192	38	19441	19482							0.020549628033336376
ISAVRPNLN	9	Unmodified	_ISAVRPNLN_					0	0	0			REV__ENST00000434116.6_1_15:65911262-65916428:+|nuORF	REV__ENST00000434116.6_1_15:65911262-65916428:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.8013916015625	2	492.285266	982.555979	-1.1328	-0.00055766	-1.9152	-0.00094283	-3.048	-0.0015005	492.2852200223108	35.991	0.37332	35.948	35.763	36.136	-0.042454					16	10	3	0	0	0	0.024397	1	2827	2827		18.262	0	1	156420	+		28193	32416	19442	19483	32496	32496					0.06400278537364557
ISAWARGEV	9	Unmodified	_ISAWARGEV_					0	0	0			REV__ENST00000456352.2_1_6:111895858-111897843:+|nuORF	REV__ENST00000456352.2_1_6:111895858-111897843:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.79449462890625	2	494.764166	987.513779	0.29475	0.00014583	-3.4191	-0.0016916	-3.1243	-0.0015458	494.7641151239838	59.48	0.3279	59.231	59.09	59.417	-0.24842					10	7	2	0	0	0	0.021088	1	6569	6569		90.777	0	1	54781	+		28194	32794	19443	19484	32497	32497					0.01952303128996391
ISAWCYECYY	10	Unmodified	_ISAWCYECYY_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2645263671875	3	434.171954	1299.49403	-0.07819	-3.3948E-05	-2.2993	-0.00099828	-2.3775	-0.0010322	434.1708998587851	28.365	0.76533	28.213	27.847	28.612	-0.15195					39	18	3	0	0	0	0.03519	1	1626	1626		15.333	2.9003	1	203580	+		28195	21694	19444	19485	32498	32498					-0.14373576988282366
ISAWCYECYY	10	Unmodified	_ISAWCYECYY_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	434.171954	1299.49403	-1.2168	-0.0005283	-0.70359	-0.00030548	-1.9204	-0.00083378	434.1715118324206	28.703	0.88356	28.458	28.041	28.924	-0.24524	0.1181	0.0013413	NaN	15.333	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167530	+		28196	21694	19444	19485							-0.14373576988282366
ISAWCYECYY	10	Unmodified	_ISAWCYECYY_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	434.171954	1299.49403	-0.45749	-0.00019863	-1.5387	-0.00066804	-1.9961	-0.00086667	434.17104707797654	28.517	0.84335	28.348	27.926	28.769	-0.16897	0.0083418	0.00025363	NaN	15.333	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164440	+		28197	21694	19444	19485							-0.14373576988282366
ISAYRPAIDL	10	Unmodified	_ISAYRPAIDL_					0	0	0			REV__nc|ENSG00000104888|Q9P2U7-3|SLC17A7;REV__ENSG00000179520|ENST00000323346|SLC17A8	REV__ENSG00000179520|ENST00000323346|SLC17A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8157348632812	2	559.813856	1117.61316	-0.4095	-0.00022924	3.3497	0.0018752	2.9402	0.001646	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.77808	1	9678	9678		62.107	5.3864	1	31806000	+		28198	21478;27273	19445	19486	32499	32499					0.05905701023084475
ISCFCLAPH	9	Unmodified	_ISCFCLAPH_					0	0	0			REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7753601074219	2	495.730423	989.446293	1.5064	0.00074675	-2.2596	-0.0011201	-0.75322	-0.00037339	495.7290931239272	59.768	0.58389	59.768	59.482	60.066	0					32	15	3	0	0	0	0.024541	1	6884	6884		24.203	14.018	1	447930	+		28199	30831	19446	19487	32500	32500					-0.0488518639783706
ISCHADLEAL	10	Unmodified	_ISCHADLEAL_					0	0	0		nc|ENSG00000064655|O00167-3|EYA2;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2	nc|ENSG00000064655|O00167-3|EYA2	nc|ENSG00000064655|O00167-3|EYA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.8297729492188	2	536.260599	1070.50665	-0.15176	-8.1385E-05	-3.2122	-0.0017226	-3.364	-0.001804	536.258639971433	49.666	0.56179	49.56	49.221	49.783	-0.10558					25	14	3	0	0	0	0.03519	1	4994	4994		40.778	0.20554	1	374770			28200	1279	19447	19488	32501	32501					-0.025787975337379976
ISCKEELLL	9	Carbamidomethyl (C)	_ISC(Carbamidomethyl (C))KEELLL_	ISC(1)KEELLL		ISC(96)KEELLL		0	1	0		ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.8046875	2	552.8021	1103.58965	-0.82943	-0.00045851	3.8741	0.0021416	3.0446	0.0016831	552.8042805746485	25.505	0.99236	25.505	25.211	26.203	0					76	23	6	0	0	0	0.16468	1	1200	1200		96.19	6.0416	1	7394400			28201	4719	19448	19489	32502	32502	60				0.04199519194253298
ISDALKAGAV	10	Unmodified	_ISDALKAGAV_					0	0	0		ENST00000574916.1_1_17:685618-686569:+|nuORF;ENSG00000171861|ENST00000304478|MRM3	ENST00000574916.1_1_17:685618-686569:+|nuORF	ENST00000574916.1_1_17:685618-686569:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7768249511719	2	472.7742	943.533846	0.37631	0.00017791	4.3337	0.0020488	4.71	0.0022268	472.7760629626344	79.193	2.2086	79.193	78.122	80.331	0					110	52	3	0	0	0	0.66532	1	9792	9792		69.628	8.6557	1	1289400			28202	8208	19449	19490	32503	32503					0.05982054068954312
ISDCPGHSN	9	Unmodified	_ISDCPGHSN_					0	0	0			REV__ENSG00000268043|ENST00000698835|NBPF12	REV__ENSG00000268043|ENST00000698835|NBPF12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2378845214844	2	465.192716	928.37088	-0.31634	-0.00014716	3.3568	0.0015616	3.0405	0.0014144	465.1944962584791	29.772	0.12009	29.851	29.763	29.883	0.078344					4	2	2	0	0	0	0.024427	1	1810	1810		26.693	0	1	43431	+		28203	29130	19450	19491	32504	32504					-0.09617072324545006
ISDDFPPEVY	10	Unmodified	_ISDDFPPEVY_					0	0	0			REV__ENSG00000184786|ENST00000366774|DYNLT2	REV__ENSG00000184786|ENST00000366774|DYNLT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	590.2741088867188	2	591.271687	1180.52882	-1.1247	-0.00066502	-2.0419	-0.0012073	-3.1666	-0.0018723	591.2682667027541	89.636	0.21609	89.508	89.37	89.586	-0.12774					8	4	3	0	0	0	0.03519	1	10950	10950		34.173	0	1	17039	+		28204	27699	19451	19492	32505	32505					-0.05422294584309384
ISDGKMQLY	9	Unmodified	_ISDGKMQLY_					0	0	0		nc|ENSG00000198182|Q96SK3-3|ZNF607;ENSG00000198182|ENST00000355202|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	nc|ENSG00000198182|Q96SK3-3|ZNF607	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7689819335938	2	527.765517	1053.51648	-0.73579	-0.00038832	-1.6114	-0.00085046	-2.3472	-0.0012388	527.7643481896415	48.129	0.65805	48.032	47.78	48.438	-0.097553					32	17	2	0	0	0	0.021816	1	4739	4739		107.01	30.233	1	619840			28205	10105	19452	19493	32506	32506					-0.008136095283589384
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.7378234863281	2	496.737814	991.461075	-0.39869	-0.00019804	0.45841	0.00022771	0.059719	2.9665E-05	496.7379512235692	36.466	1.0368	36.261	35.953	36.99	-0.20518					67	26	4	0	0	0	0.17455	3	2860	2851;2860;2874		94.006	19.556	1	4185300			28206	18030	19453	19494	32507;32508;32509	32508					-0.03499699724466154
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.73797607421875	2	496.737814	991.461075	0.16521	8.2066E-05	-0.26364	-0.00013096	-0.098427	-4.8892E-05	496.73757485866656	36.441	1.1361	36.225	35.981	37.117	-0.21661					66	28	4	0	0	0	0.11848	3	2849	2849;2859;2874		106.42	29.569	1	4335100			28207	18030	19453	19494	32510;32511;32512	32510					-0.03499699724466154
ISDHGTVTY	9	Unmodified	_ISDHGTVTY_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7378234863281	2	496.737814	991.461075	1.3343	0.00066282	-1.5644	-0.00077712	-0.2301	-0.0001143	496.73694277607325	36.39	1.1375	36.192	35.91	37.048	-0.19829					71	28	4	0	0	0	0.074956	3	2835	2825;2835;2848		119.56	35.037	1	4109800			28208	18030	19453	19494	32513;32514;32515	32514					-0.03499699724466154
ISDITVLGTF	10	Unmodified	_ISDITVLGTF_					0	0	0		nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2931518554688	2	533.294965	1064.57538	-0.53698	-0.00028637	-2.5171	-0.0013423	-3.0541	-0.0016287	533.293464518406	24.868	0.52444	24.642	24.408	24.932	-0.226					33	11	5	0	0	0	1.0142	1	1136	1136		44.117	4.0586	1	1083100			28209	9202	19454	19495	32516	32516					0.04567190037619184
ISDKQENL	8	Unmodified	_ISDKQENL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.26617431640625	2	473.745639	945.476725	0.93388	0.00044242	0.22329	0.00010578	1.1572	0.0005482	473.7461748774291	77.412	0.2155	77.412	77.295	77.51	0					5	4	2	0	0	0	0.027866	1	9550	9550		17.365	5.8539	1	38576			28210	10179	19455	19496	32517	32517					0.0018058679257819676
ISDLFIDNY	9	Unmodified	_ISDLFIDNY_					0	0	0		ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2693481445312	2	550.268947	1098.52334	0.096552	5.313E-05	-0.011612	-6.3897E-06	0.084941	4.674E-05	550.2688929435121	80.381	1.4326	80.143	79.747	81.179	-0.23783					104	34	5	0	0	0	0.013293	4	9625	9601;9613;9625;9637		176.09	71.813	1	6856400			28211	9605	19456	19497	32518;32519;32520;32521	32520					-0.0219797337615546
ISDLFIDNY	9	Unmodified	_ISDLFIDNY_					0	0	0		ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.2688598632812	2	550.268947	1098.52334	0.22314	0.00012279	-0.37059	-0.00020393	-0.14745	-8.1138E-05	550.2686800794695	80.319	2.1169	80.113	79.672	81.789	-0.20632					117	50	5	0	0	0	0.013293	6	9639	9607;9615;9627;9639;9651;9663		176.09	73.313	1	6544300			28212	9605	19456	19497	32522;32523;32524;32525;32526;32527	32525					-0.0219797337615546
ISDLFIDNY	9	Unmodified	_ISDLFIDNY_					0	0	0		ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	ENSG00000187068|ENST00000335012|C3orf70	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2682495117188	2	550.268947	1098.52334	-0.095403	-5.2498E-05	-0.078582	-4.3241E-05	-0.17399	-9.5739E-05	550.2688635784821	80.242	2.0362	80.096	79.743	81.779	-0.146					111	48	5	0	0	0	0.014918	5	9606	9584;9595;9606;9618;9630		209.84	87.664	1	6670000			28213	9605	19456	19497	32528;32529;32530;32531;32532	32530					-0.0219797337615546
ISDLFPGLDC	10	Unmodified	_ISDLFPGLDC_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.25830078125	2	540.257525	1078.5005	-0.64145	-0.00034655	0.47463	0.00025642	-0.16682	-9.0124E-05	540.2576511077879	76.381	0.64833	76.381	76.071	76.719	0					40	15	3	0	0	0	0.48123	1	9408	9408		90.37	8.1293	1	1258500			28214	18641	19457	19498	32533	32533					-0.035613157652505834
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.279296875	2	541.279846	1080.54514	-0.83748	-0.00045331	0.81573	0.00044154	-0.021754	-1.1775E-05	541.2802387250882	53.518	1.0622	53.382	53.057	54.119	-0.13616					93	31	5	0	0	0	0.025498	3	5636	5609;5620;5636		145.16	36.226	1	11521000			28215	10363	19458	19499	32534;32535;32536	32536					0.008088313724329055
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2789306640625	2	541.279846	1080.54514	-0.42208	-0.00022846	0.12826	6.9423E-05	-0.29382	-0.00015904	541.2798561841853	53.684	1.576	53.439	52.975	54.551	-0.2453					108	46	5	0	0	0	0.015752	2	5633	5633;5644		158.07	42.581	1	13650000			28216	10363	19458	19499	32537;32538	32537					0.008088313724329055
ISDLIRDSY	9	Unmodified	_ISDLIRDSY_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2783813476562	2	541.279846	1080.54514	-1.0654	-0.0005767	0.68146	0.00036886	-0.38397	-0.00020783	541.2801926488053	53.6	1.1571	53.402	53.011	54.168	-0.19739					92	33	5	0	0	0	0.025498	3	5614	5614;5626;5641		145.16	45.004	1	12369000			28217	10363	19458	19499	32539;32540;32541	32539					0.008088313724329055
ISDLMALFY	9	Unmodified	_ISDLMALFY_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2385864257812	2	536.772811	1071.53107	-1.4208	-0.00076265	-4.4035	-0.0023637	-5.8243	-0.0031263	536.7700582762421	61.106	0.1955	60.852	60.736	60.931	-0.25373					6	4	2	0	0	0	0.018819	1	6794	6794		110.34	30.625	1	48420	+		28218	27558	19459	19500	32542	32542					-0.0018353738021232857
ISDMAFNYE	9	Unmodified	_ISDMAFNYE_					0	0	0		BRWD3|p.V230F|1|0.6|ENSG00000165288|chrX:80744157-80744157|C/A|missense_variant	BRWD3|p.V230F|1|0.6|ENSG00000165288|chrX:80744157-80744157|C/A|missense_variant	BRWD3|p.V230F|1|0.6|ENSG00000165288|chrX:80744157-80744157|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2825927734375	2	545.231507	1088.44846	0.21293	0.0001161	2.5803	0.0014069	2.7932	0.001523	545.2327640930964	59.41	1.4843	59.229	58.791	60.275	-0.18134					66	37	2	0	0	0	0.023417	1	6666	6666		68.787	0	1	350670			28219	193	19460	19501	32543	32543					-0.09222479179038601
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.2270202636719	2	468.227082	934.439611	0.027723	1.2981E-05	0.34188	0.00016008	0.36961	0.00017306	468.22702174001466	49.422	1.0242	49.321	49.068	50.093	-0.1008					78	26	6	0	0	0	0.057894	4	4961	4950;4961;4974;4987		125.81	27.626	1	7963600			28220	13126	19461	19502	32544;32545;32546;32547	32545					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2270812988281	2	468.227082	934.439611	0.12538	5.8706E-05	0.18661	8.7376E-05	0.31199	0.00014608	468.2269660597448	49.743	1.0979	49.463	49.123	50.221	-0.27977					84	28	5	0	0	0	0.01452	4	5001	4979;4989;5001;5013		186.09	72.677	1	8051600			28221	13126	19461	19502	32548;32549;32550;32551	32550					-0.030230847531811378
ISDPGVQGY	9	Unmodified	_ISDPGVQGY_					0	0	0		ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	ENST00000374647.9_1_9:111693343-111696326:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2264099121094	2	468.227082	934.439611	-0.019855	-9.2968E-06	0.24924	0.0001167	0.22939	0.0001074	468.22700144834283	49.547	1.17	49.367	49.002	50.172	-0.18071					85	30	5	0	0	0	0.016871	4	4985	4962;4972;4985;4997		152.47	40.822	1	10039000			28222	13126	19461	19502	32552;32553;32554;32555	32554					-0.030230847531811378
ISDRAARYYYY	11	Unmodified	_ISDRAARYYYY_					0	0	0		nc|ENSG00000139926|Q96NE9-2|FRMD6;ENSG00000139926|ENST00000344768|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.21710205078125	3	480.901731	1439.68336	-1.0886	-0.0005235	0.71275	0.00034276	-0.37583	-0.00018074	480.90192046671643	37.36	0.42501	37.14	36.846	37.271	-0.2195					14	10	2	0	0	0	0.024801	1	2964	2964		12.957	0	1	124460			28223	5378	19462	19503	32556	32556					-0.01889045379084564
ISDRLIGIY	9	Unmodified	_ISDRLIGIY_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3029174804688	2	525.303124	1048.5917	-0.2701	-0.00014188	-0.49356	-0.00025927	-0.76366	-0.00040115	525.3029431404988	63.545	1.2971	63.317	62.769	64.066	-0.22773					87	32	4	0	0	0	0.247	1	7192	7192		82.75	16.853	1	3780400			28224	3327	19463	19504	32557	32557					0.06934315994385543
ISDRLIGIY	9	Unmodified	_ISDRLIGIY_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3030395507812	2	525.303124	1048.5917	-0.16181	-8.5E-05	-0.74789	-0.00039287	-0.9097	-0.00047787	525.3028355700635	63.551	1.4165	63.358	62.738	64.154	-0.19243					96	35	4	0	0	0	0.19099	2	7195	7195;7208		90.37	6.5217	1	3828400			28225	3327	19463	19504	32558;32559	32558					0.06934315994385543
ISDRLIGIY	9	Unmodified	_ISDRLIGIY_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.302734375	2	525.303124	1048.5917	0.41611	0.00021859	-1.1885	-0.00062432	-0.77238	-0.00040573	525.3025713572408	63.64	1.2385	63.382	62.835	64.073	-0.25824					96	31	4	0	0	0	0.40693	1	7194	7194		65.465	4.4934	1	4324200			28226	3327	19463	19504	32560	32560					0.06934315994385543
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.745849609375	2	540.745836	1079.47712	-1.1686	-0.00063193	0.84843	0.00045878	-0.32021	-0.00017315	540.7462143396853	31.218	0.76795	31.065	30.806	31.574	-0.15231					30	19	2	0	0	0	0.014475	1	2040	2040		185.72	87.089	1	1056100			28227	8411	19464	19505	32561	32561					-0.05944038278221342
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.745836	1079.47712	-0.62674	-0.00033891	0.34987	0.00018919	-0.27687	-0.00014972	540.7459468113663	31.33	0.53746	31.089	30.794	31.332	-0.24109	0.023067	-0.0001667	NaN	185.72	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1035400			28228	8411	19464	19505							-0.05944038278221342
ISEDKNPDY	9	Unmodified	_ISEDKNPDY_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.745836	1079.47712	-0.66412	-0.00035912	0.47817	0.00025857	-0.18594	-0.00010055	540.7459396427815	31.228	0.61629	31.043	30.784	31.4	-0.18503	-0.022525	-2.7935E-05	NaN	185.72	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	885010			28229	8411	19464	19505							-0.05944038278221342
ISEEERADV	9	Unmodified	_ISEEERADV_					0	0	0			REV__nc|ENSG00000205683|Q92784-4|DPF3	REV__nc|ENSG00000205683|Q92784-4|DPF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2726440429688	2	524.251286	1046.48802	-1.3801	-0.0007235	-1.6334	-0.00085634	-3.0135	-0.0015798	524.2504410727373	62.925	0.40045	62.925	62.69	63.09	0					16	9	2	0	0	0	0.024523	1	7304	7304		15.642	0	1	154160	+		28230	28686	19465	19506	32562	32562					-0.03336635903951901
ISEEERADV	9	Unmodified	_ISEEERADV_					0	0	0			REV__nc|ENSG00000205683|Q92784-4|DPF3	REV__nc|ENSG00000205683|Q92784-4|DPF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.251286	1046.48802	-0.66624	-0.00034928	-2.2907	-0.0012009	-2.9569	-0.0015502	524.2498762446938	63.109	0.40112	62.87	62.695	63.096	-0.23926	-0.045732	0.00024381	NaN	19.997	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212270	+		28231	28686	19465	19506							-0.03336635903951901
ISEEERADV	9	Unmodified	_ISEEERADV_					0	0	0			REV__nc|ENSG00000205683|Q92784-4|DPF3	REV__nc|ENSG00000205683|Q92784-4|DPF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.251286	1046.48802	0.51996	0.00027259	-3.1723	-0.0016631	-2.6523	-0.0013905	524.2494655363379	62.898	0.40705	62.952	62.719	63.126	0.054104	0.036827	-0.00068058	NaN	19.997	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222950	+		28232	28686	19465	19506							-0.03336635903951901
ISEEKKSAR	9	Unmodified	_ISEEKKSAR_					0	0	0		ZNF594|p.S50Afs*3|1|0.34|ENSG00000180626|chr17:5184109-5184109|T/-|frameshift_variant;ENSG00000180626|ENST00000575779|ZNF594	ZNF594|p.S50Afs*3|1|0.34|ENSG00000180626|chr17:5184109-5184109|T/-|frameshift_variant	ZNF594|p.S50Afs*3|1|0.34|ENSG00000180626|chr17:5184109-5184109|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2722778320312	2	524.293288	1046.57202	-0.901	-0.00047239	-0.27672	-0.00014508	-1.1777	-0.00061747	524.2930688713805	39.11	0.67067	39.011	38.843	39.514	-0.098755					28	18	2	0	0	0	0.023007	1	3363	3363		87.754	41.782	1	541830			28233	8988	19466	19507	32563	32563					0.050599399836073644
ISEEKKSAR	9	Unmodified	_ISEEKKSAR_					0	0	0		ZNF594|p.S50Afs*3|1|0.34|ENSG00000180626|chr17:5184109-5184109|T/-|frameshift_variant;ENSG00000180626|ENST00000575779|ZNF594	ZNF594|p.S50Afs*3|1|0.34|ENSG00000180626|chr17:5184109-5184109|T/-|frameshift_variant	ZNF594|p.S50Afs*3|1|0.34|ENSG00000180626|chr17:5184109-5184109|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.293288	1046.57202	-0.49154	-0.00025771	5.8147	0.0030486	5.3231	0.0027909	524.2960046318976	39.424	0.84486	39.201	38.577	39.422	-0.22311	0.031567	0.0057878	NaN	87.754	30	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184470			28234	8988	19466	19507							0.050599399836073644
ISEEPFELS	9	Unmodified	_ISEEPFELS_					0	0	0		ENSG00000147316|ENST00000344683|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.303466796875	2	525.75313	1049.49171	-0.42323	-0.00022251	-0.97025	-0.00051011	-1.3935	-0.00073262	525.7516591644934	72.537	0.59068	72.339	72.077	72.667	-0.19811					22	13	3	0	0	0	0.024457	1	8460	8460		37.159	14.117	1	283190			28235	5955	19467	19508	32564	32564					-0.03105966130078741
ISEERNLNA	9	Unmodified	_ISEERNLNA_					0	0	0			REV__nc|ENSG00000169398|Q05397-3|PTK2	REV__nc|ENSG00000169398|Q05397-3|PTK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2520751953125	2	523.26727	1044.51999	-0.058018	-3.0359E-05	3.5081	0.0018357	3.4501	0.0018053	523.2689475545506	53.056	0.94188	52.929	52.632	53.574	-0.12705					41	24	2	0	0	0	0.024294	1	5642	5642		45.952	7.1983	1	1112600	+		28236	26364	19468	19509	32565	32565					-0.0004922343014186481
ISEERNLNA	9	Unmodified	_ISEERNLNA_					0	0	0			REV__nc|ENSG00000169398|Q05397-3|PTK2	REV__nc|ENSG00000169398|Q05397-3|PTK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.26727	1044.51999	-0.93937	-0.00049154	4.7769	0.0024996	3.8375	0.0020081	523.2696255125798	52.95	1.0598	52.95	52.595	53.655	0	-0.00068166	0.00098864	NaN	45.952	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	846140	+		28237	26364	19468	19509							-0.0004922343014186481
ISEERNLNA	9	Unmodified	_ISEERNLNA_					0	0	0			REV__nc|ENSG00000169398|Q05397-3|PTK2	REV__nc|ENSG00000169398|Q05397-3|PTK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.26727	1044.51999	-0.58882	-0.00030811	4.575	0.002394	3.9862	0.0020859	523.2696246480383	53.083	0.88438	52.935	52.645	53.529	-0.14723	-0.01565	0.00077739	NaN	45.952	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	883470	+		28238	26364	19468	19509							-0.0004922343014186481
ISEERNLNA	9	Unmodified	_ISEERNLNA_					0	0	0			REV__nc|ENSG00000169398|Q05397-3|PTK2	REV__nc|ENSG00000169398|Q05397-3|PTK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.26727	1044.51999	0.4022	0.00021046	2.858	0.0014955	3.2602	0.0017059	523.2686023474869	53.292	0.79395	53.034	52.683	53.477	-0.25838	0.083084	-0.0010196	NaN	45.952	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074600	+		28239	26364	19468	19509							-0.0004922343014186481
ISEERNLNA	9	Unmodified	_ISEERNLNA_					0	0	0			REV__nc|ENSG00000169398|Q05397-3|PTK2	REV__nc|ENSG00000169398|Q05397-3|PTK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.26727	1044.51999	0.08476	4.4352E-05	3.3126	0.0017334	3.3974	0.0017777	523.2688120042706	53.103	0.87865	52.913	52.551	53.429	-0.18981	-0.037787	-0.00054377	NaN	45.952	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121700	+		28240	26364	19468	19509							-0.0004922343014186481
ISEFKFLL	8	Unmodified	_ISEFKFLL_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7894592285156	2	498.791861	995.569169	-0.10721	-5.3477E-05	-3.6261	-0.0018087	-3.7333	-0.0018622	498.7899003988223	70.097	1.8667	70.109	69.751	71.618	0.012421					99	48	3	0	0	0	0.53523	1	8371	8371		82.305	5.4584	1	8064700	+		28241	20008	19469	19510	32566	32566					0.07120716596762122
ISEIKRWLD	9	Unmodified	_ISEIKRWLD_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3	REV__ENSG00000053747|ENST00000313654|LAMA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	580.3052368164062	2	580.327131	1158.63971	-0.21728	-0.00012609	-0.36891	-0.00021409	-0.58619	-0.00034018	580.3265500985875	64.164	0.77219	64.164	63.917	64.69	0					49	20	4	0	0	0	0.024025	1	7556	7556		52.937	13.684	1	1090700	+		28242	20182	19470	19511	32567	32567					0.0667338991440829
ISELAGERRFA	11	Unmodified	_ISELAGERRFA_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MSMS	OPSCC_40_ClassI_Rep-2	5	416.8943786621094	3	416.894688	1247.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.183	1	30.004	29.504	30.504	-0.17818								0	0	0	0.85644	1	1902	1902		56.632	6.5987	1				28243	1285	19471	19512	32568	32568					0.04830989312040401
ISELNAGKGR	10	Unmodified	_ISELNAGKGR_					0	0	0		nc|ENSG00000165138|Q68DC2-4|ANKS6;ENSG00000165138|ENST00000353234|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.731689453125	2	522.793455	1043.57236	-0.73669	-0.00038514	2.5187	0.0013168	1.7821	0.00093164	522.7968182129512	37.123	0.85939	36.904	36.647	37.506	-0.2195					32	21	2	0	0	0	0.03519	1	2998	2998		21.686	0	1	243670			28244	7369	19472	19513	32569	32569					0.05231359703475391
ISELRLPK	8	Unmodified	_ISELRLPK_					0	0	0		MMP13|p.G374R|1|0.57|ENSG00000137745|chr11:102947982-102947982|C/G|missense_variant	MMP13|p.G374R|1|0.57|ENSG00000137745|chr11:102947982-102947982|C/G|missense_variant	MMP13|p.G374R|1|0.57|ENSG00000137745|chr11:102947982-102947982|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2979431152344	2	478.300384	954.586216	-0.32491	-0.0001554	0.025414	1.2156E-05	-0.2995	-0.00014325	478.3003331604666	72.641	0.8416	72.443	71.869	72.71	-0.1981					28	19	2	0	0	0	0.027866	1	8485	8485		12.959	0	1	393220			28245	17988	19473	19514	32570	32570					0.10710637202566886
ISELRQATV	9	Unmodified	_ISELRQATV_					0	0	0		nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.79010009765625	2	508.790381	1015.56621	-1.0978	-0.00055856	0.84398	0.00042941	-0.25384	-0.00012915	508.7907233047651	60.715	0.67521	60.539	60.322	60.997	-0.1761					34	16	3	0	0	0	0.42604	1	6787	6787		64.207	2.516	1	2506900			28246	1116	19474	19515	32571	32571					0.05904841471954114
ISEPIASHVV	10	Unmodified	_ISEPIASHVV_					0	0	0		ENST00000561277.5_1_15:77338902-77338950:-|nuORF	ENST00000561277.5_1_15:77338902-77338950:-|nuORF	ENST00000561277.5_1_15:77338902-77338950:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2640380859375	2	526.292756	1050.57096	-0.57697	-0.00030365	0.020344	1.0707E-05	-0.55662	-0.00029295	526.2925637444007	56.176	0.72781	56.02	55.778	56.506	-0.15602					32	19	3	0	0	0	0.03519	1	6208	6208		56.721	0	1	906000			28247	16822	19475	19516	32572	32572					0.04769725614710296
ISEPIASHVV	10	Unmodified	_ISEPIASHVV_					0	0	0		ENST00000561277.5_1_15:77338902-77338950:-|nuORF	ENST00000561277.5_1_15:77338902-77338950:-|nuORF	ENST00000561277.5_1_15:77338902-77338950:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2632446289062	2	526.292756	1050.57096	-0.62888	-0.00033097	0.033304	1.7528E-05	-0.59557	-0.00031345	526.2925436962372	55.851	0.57575	55.949	55.707	56.283	0.097893					28	15	3	0	0	0	0.03519	1	6107	6107		68.787	0	1	988170			28248	16822	19475	19516	32573	32573					0.04769725614710296
ISEPVMDL	8	Unmodified	_ISEPVMDL_					0	0	0		chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|53	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|53	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|53	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.230224609375	2	452.228236	902.44192	0.084603	3.826E-05	4.0079	0.0018125	4.0925	0.0018507	452.2299920048317	26.343	0.57254	26.343	26.001	26.573	0					25	13	2	0	0	0	0.52467	1	1351	1351		83.287	11.41	1	3233800			28249	380	19476	19517	32574	32574					-0.013203723397509748
ISEPVMDL	8	Unmodified	_ISEPVMDL_					0	0	0		chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|53	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|53	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|53	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.230224609375	2	452.228236	902.44192	-0.26863	-0.00012148	4.328	0.0019572	4.0593	0.0018357	452.23014342301957	26.366	0.57337	26.343	25.954	26.527	-0.023088					24	13	2	0	0	0	0.56067	1	1327	1327		79.939	0	1	3350400			28250	380	19476	19517	32575	32575					-0.013203723397509748
ISESHPIL	8	Unmodified	_ISESHPIL_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.7376708984375	2	448.247818	894.481082	0.33233	0.00014897	-1.434	-0.0006428	-1.1017	-0.00049383	448.2483005654106	41.618	0.32425	41.618	41.469	41.793	0					10	8	2	0	0	0	0.027866	1	3736	3736		44.531	11.015	1	53129			28251	944	19477	19518	32576	32576					0.029620960061379265
ISESHPILY	9	Unmodified	_ISESHPILY_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7791137695312	2	529.779482	1057.54441	-0.2369	-0.0001255	-0.21683	-0.00011487	-0.45373	-0.00024037	529.7793908407918	63.612	1.728	63.385	62.769	64.497	-0.22773					116	43	4	0	0	0	0.40179	1	7208	7208		65.803	0	1	19982000			28252	944	19478	19519	32577	32577					0.017940367233904908
ISESHPILY	9	Unmodified	_ISESHPILY_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7791137695312	2	529.779482	1057.54441	-0.48699	-0.000258	-0.027667	-1.4657E-05	-0.51466	-0.00027266	529.7794735641246	63.592	1.6886	63.399	62.822	64.51	-0.19243					128	42	4	0	0	0	0.40179	2	7180	7180;7204		65.803	13.504	1	21021000			28253	944	19478	19519	32578;32579	32578					0.017940367233904908
ISESHPILY	9	Unmodified	_ISESHPILY_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7802124023438	2	529.779482	1057.54441	0.34595	0.00018328	-0.86627	-0.00045893	-0.52032	-0.00027565	529.7790256497054	63.692	1.8732	63.434	62.706	64.579	-0.25824					137	47	4	0	0	0	0.36105	6	7186	7159;7164;7186;7198;7210;7236		68.485	8.9235	1	19432000			28254	944	19478	19519	32580;32581;32582;32583;32584;32585	32582					0.017940367233904908
ISEVALALD	9	Unmodified	_ISEVALALD_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.76031494140625	2	465.760758	929.506963	-0.16862	-7.8535E-05	0.17122	7.9746E-05	0.0025995	1.2107E-06	465.7607631075904	80.445	0.8595	80.299	79.954	80.813	-0.146					51	20	4	0	0	0	0.53979	1	9651	9651		56.721	1.9447	1	871900			28255	3823	19479	19520	32586	32586					0.03938945457741738
ISFAMRMLY	9	Oxidation (M)	_ISFAM(Oxidation (M))RMLY_		ISFAM(0.613)RM(0.387)LY		ISFAM(2)RM(-2)LY	0	0	1		nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	nc|ENSG00000169679|O43683-3|BUB1	nc|ENSG00000169679|O43683-3|BUB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.29052734375	2	574.285563	1146.55657	-0.58386	-0.0003353	-1.7591	-0.0010102	-2.3429	-0.0013455	574.284593292226	65.565	1.545	65.314	64.946	66.491	-0.25112					82	39	3	0	0	0	0.023061	1	7433	7433		62.107	16.155	2	983490			28256	7963	19480	19521	32587	32587		332			-0.010843861294461021
ISFCAFRY	8	Unmodified	_ISFCAFRY_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7667541503906	2	503.744388	1005.47422	0.42814	0.00021567	2.4584	0.0012384	2.8865	0.0014541	503.7456778771085	58.595	0.65479	58.595	58.38	59.035	0					36	17	3	0	0	0	0.027866	1	6619	6619		28.254	4.7316	1	868710			28257	14164	19481	19522	32588	32588					-0.02829540146092313
ISFEESFFY	9	Unmodified	_ISFEESFFY_					0	0	0		FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.2977294921875	2	584.763497	1167.51244	-1.7103	-0.0010001	3.5171	0.0020567	1.8068	0.0010566	584.7658570155774	44.283	0.35313	44.039	43.867	44.22	-0.2444					14	9	2	0	0	0	0.024466	1	4110	4110		12.207	0	1	129330			28258	17641	19482	19523	32589	32589					-0.06461375750427578
ISFGGSVQL	9	Unmodified	_ISFGGSVQL_					0	0	0		ENSG00000163633|ENST00000295898|C4orf36	ENSG00000163633|ENST00000295898|C4orf36	ENSG00000163633|ENST00000295898|C4orf36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.2664794921875	2	454.247818	906.481082	-0.079723	-3.6214E-05	3.0794	0.0013988	2.9996	0.0013626	454.2487799440835	63.159	0.44645	63.159	62.854	63.301	0					19	11	2	0	0	0	0.016361	1	7374	7374		136.27	2.4554	1	363670			28259	7120	19483	19524	32590	32590					0.024100960061332444
ISFHQHHQD	9	Unmodified	_ISFHQHHQD_					0	0	0		ENST00000396526.7_1_14:35074841-35077276:-|nuORF	ENST00000396526.7_1_14:35074841-35077276:-|nuORF	ENST00000396526.7_1_14:35074841-35077276:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.2920532226562	2	574.765229	1147.5159	-0.71827	-0.00041283	-2.1664	-0.0012452	-2.8847	-0.001658	575.2671186128955	82.217	0.16803	82.243	82.147	82.315	0.025711					5	3	2	0	0	0	0.024487	1	10183	10183		11.511	0	1	27771			28260	13559	19484	19525	32591	32591					-0.051952681332068096
ISFIREVGIS	10	Unmodified	_ISFIREVGIS_					0	0	0			REV__nc|ENSG00000170445|P12081-3|HARS1	REV__nc|ENSG00000170445|P12081-3|HARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2662963867188	2	560.821681	1119.62881	-0.17861	-0.00010017	0.67719	0.00037978	0.49859	0.00027962	560.8220479015198	59.798	0.45935	59.549	59.377	59.836	-0.24842					30	11	4	0	0	0	0.03519	1	6608	6608		47.657	0	1	928860	+		28261	26471	19485	19526	32592	32592					0.07377987540144204
ISFKEVGNY	9	Unmodified	_ISFKEVGNY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7710571289062	2	528.771657	1055.52876	-1.2191	-0.00064465	0.99306	0.0005251	-0.22608	-0.00011955	528.7719305179878	53.895	1.1608	53.759	53.496	54.657	-0.13617					105	34	5	0	0	0	0.14181	1	5690	5690		101.25	49.917	1	7222600			28262	6601	19486	19527	32593	32593					0.003217502063534994
ISFKEVGNY	9	Unmodified	_ISFKEVGNY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.771657	1055.52876	-0.4255	-0.00022499	0.012367	6.5394E-06	-0.41313	-0.00021845	528.7714608281003	54.05	0.95469	53.805	53.525	54.479	-0.2453	0.0298	-0.00032096	NaN	101.25	99	29	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7481600			28263	6601	19486	19527							0.003217502063534994
ISFKEVGNY	9	Unmodified	_ISFKEVGNY_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.771657	1055.52876	-0.17781	-9.402E-05	-0.16205	-8.5686E-05	-0.33986	-0.00017971	528.7713555512598	53.959	1.0946	53.762	53.489	54.583	-0.19739	-0.013426	-0.00050541	NaN	101.25	102	31	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7570500			28264	6601	19486	19527							0.003217502063534994
ISFKVKGTEI	10	Unmodified	_ISFKVKGTEI_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2796020507812	2	561.331882	1120.64921	0.47194	0.00026491	0.30979	0.00017389	0.78172	0.00043881	561.3321446704094	84.935	0.20705	84.935	84.792	84.999	0					5	4	2	0	0	0	0.03519	1	10640	10640		58.23	6.8945	1	36813	+		28265	20014	19487	19528	32594	32594					0.09371158199951424
ISFLAPASPT	10	Unmodified	_ISFLAPASPT_					0	0	0		ENST00000290079.8_1_9:139687350-139687656:+|nuORF	ENST00000290079.8_1_9:139687350-139687656:+|nuORF	ENST00000290079.8_1_9:139687350-139687656:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.29071044921875	2	502.276575	1002.5386	-0.33825	-0.0001699	1.2326	0.00061912	0.89437	0.00044922	502.2771238280335	85.666	0.74673	85.608	85.145	85.891	-0.05761					29	17	2	0	0	0	0.03519	1	10701	10701		32.812	12.331	1	757960			28266	11781	19488	19529	32595	32595					0.03742938211712499
ISFLQKHAD	9	Unmodified	_ISFLQKHAD_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7935791015625	2	529.785099	1057.55564	-1.4455	-0.00076582	2.3599	0.0012503	0.9144	0.00048444	529.786283307175	37.39	0.35327	37.17	37.037	37.39	-0.2195					12	8	2	0	0	0	0.024374	1	2977	2977		32.812	0	1	93763			28267	7333	19489	19530	32596	32596					0.029168588175025434
ISFLQKHAD	9	Unmodified	_ISFLQKHAD_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.785099	1057.55564	0.26786	0.00014191	-0.16267	-8.6181E-05	0.10519	5.5727E-05	529.7847021885029	37.293	0.59892	37.293	36.887	37.486	0	0.06504	-0.00021754	NaN	32.812	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368990			28268	7333	19489	19530							0.029168588175025434
ISFLQKHAD	9	Unmodified	_ISFLQKHAD_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.785099	1057.55564	-0.043017	-2.279E-05	-0.011204	-5.9359E-06	-0.054221	-2.8726E-05	529.7849261390817	37.148	0.43947	37.085	36.866	37.305	-0.063389	-0.14246	-5.705E-05	NaN	32.812	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291860			28269	7333	19489	19530							0.029168588175025434
ISFLQKHAD	9	Unmodified	_ISFLQKHAD_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.785099	1057.55564	-0.071668	-3.7969E-05	-0.079683	-4.2215E-05	-0.15135	-8.0184E-05	529.7847251898328	37.33	0.80366	37.362	36.797	37.6	0.032269	0.13471	-0.00012961	NaN	32.812	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184030			28270	7333	19489	19530							0.029168588175025434
ISFNKILAR	9	Unmodified	_ISFNKILAR_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7853393554688	2	531.326934	1060.63931	-0.95197	-0.00050581	0.24489	0.00013012	-0.70708	-0.00037569	531.3270004922248	42.997	0.3648	42.997	42.859	43.224	0					13	9	2	0	0	0	0.024427	1	3993	3993		26.693	2.4902	1	120890	+		28271	23752	19490	19531	32597	32597					0.1114201498521652
ISFPFCSM	8	Unmodified	_ISFPFCSM_					0	0	0		ENSG00000181074|ENST00000641350|OR52N4	ENSG00000181074|ENST00000641350|OR52N4	ENSG00000181074|ENST00000641350|OR52N4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2533264160156	2	466.20625	930.397946	-0.64093	-0.00029881	-2.6949	-0.0012564	-3.3358	-0.0015552	466.20490509647897	26.619	0.15111	26.383	26.305	26.456	-0.23603					5	3	2	0	0	0	0.027866	1	1398	1398		25.45	0	1	32836			28272	9022	19491	19532	32598	32598					-0.07003680037723825
ISFPPRDEW	9	Unmodified	_ISFPPRDEW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.7822875976562	2	573.782556	1145.55056	-0.19469	-0.00011171	-0.02664	-1.5285E-05	-0.22133	-0.00012699	573.782528465205	64.351	3.893	64.123	62.569	66.462	-0.22773					221	97	4	0	0	0	0.35556	3	7321	7321;7349;7607		68.846	10.597	1	5968600			28273	1504	19492	19533	32599;32600;32601	32599					-0.016394450451116427
ISFPPRDEW	9	Unmodified	_ISFPPRDEW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.7827758789062	2	573.782556	1145.55056	-0.36546	-0.00020969	0.14693	8.4304E-05	-0.21853	-0.00012539	573.7827277938131	64.323	3.8502	64.131	62.696	66.546	-0.19243					217	96	4	0	0	0	0.71548	1	7283	7283		45.022	6.2686	1	6137800			28274	1504	19492	19533	32602	32602					-0.016394450451116427
ISFPPRDEW	9	Unmodified	_ISFPPRDEW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.7819213867188	2	573.782556	1145.55056	-0.37208	-0.00021349	-0.0020392	-1.17E-06	-0.37411	-0.00021466	573.7826166563825	64.424	3.778	64.168	62.634	66.412	-0.25563					213	95	4	0	0	0	0.28047	3	7332	7248;7332;7356		78.264	8.6362	1	6621900			28275	1504	19492	19533	32603;32604;32605	32604					-0.016394450451116427
ISFPQSCLTL	10	Unmodified	_ISFPQSCLTL_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.3154907226562	2	554.788992	1107.56343	0.69345	0.00038472	-4.2035	-0.0023321	-3.5101	-0.0019474	554.7865149078921	67.633	0.62383	67.378	67.279	67.903	-0.25516					17	14	2	0	0	0	0.03519	1	7803	7803		47.657	0	1	138750	+		28276	27752	19493	19534	32606	32606					0.013952500227787823
ISFQESIFL	9	Unmodified	_ISFQESIFL_					0	0	0		ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2896728515625	2	542.289682	1082.56481	-0.43055	-0.00023348	0.26139	0.00014175	-0.16916	-9.1735E-05	542.289635572219	104.51	0.7971	104.51	104.2	105	0					67	22	4	0	0	0	0.14024	1	13396	13396		101.6	2.9713	1	1300300			28277	4665	19494	19535	32607	32607					0.026832073831883463
ISFSHLFF	8	Unmodified	_ISFSHLFF_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.23419189453125	2	499.260728	996.506903	-0.50055	-0.0002499	-3.2079	-0.0016016	-3.7084	-0.0018515	499.2584922684538	57.222	0.35634	57.054	56.751	57.107	-0.1672					16	9	2	0	0	0	0.027866	1	6210	6210		25.45	6.0902	1	135150	+		28278	27439	19495	19536	32608	32608					0.008509902484206577
ISFSHLFF	8	Unmodified	_ISFSHLFF_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	499.260728	996.506903	-0.10163	-5.0741E-05	-3.4575	-0.0017262	-3.5592	-0.001777	499.25893154421834	57.042	0.55399	57.042	56.712	57.266	0	0.0049672	-2.3829E-05	NaN	33.516	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106200	+		28279	27439	19495	19536							0.008509902484206577
ISFSHLFF	8	Unmodified	_ISFSHLFF_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.260728	996.506903	0.097949	4.8902E-05	-3.5561	-0.0017754	-3.4582	-0.0017265	499.25871054726196	57.179	0.4983	57.014	56.78	57.278	-0.16431	-0.022581	-0.00012226	NaN	33.516	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123670	+		28280	27439	19495	19536							0.008509902484206577
ISFSSFKI	8	Unmodified	_ISFSSFKI_					0	0	0			REV__nc|ENSG00000109046|Q9Y6I7-4|WSB1	REV__nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7716369628906	2	464.760561	927.506569	-0.33649	-0.00015639	1.9247	0.00089452	1.5882	0.00073813	464.76069601602296	76.29	0.3907	76.061	75.888	76.279	-0.22843					13	9	2	0	0	0	0.027866	1	9347	9347		33.516	0	1	78621	+		28281	33086	19496	19537	32609	32609					0.03991570528569355
ISFVGCAAWVV	11	Unmodified	_ISFVGCAAWVV_					0	0	0			REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.784912109375	2	576.299527	1150.5845	-1.2547	-0.00072306	3.3645	0.0019389	2.1098	0.0012159	576.3017128581912	60.831	0.47097	60.654	60.443	60.914	-0.1761					17	11	2	0	0	0	0.024749	1	6761	6761		23.042	2.2053	1	237780	+		28282	21373	19497	19538	32610	32610					0.015232601222805897
ISFVPISIN	9	Unmodified	_ISFVPISIN_					0	0	0			REV__nc|ENSG00000020922|P49959-2|MRE11	REV__nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.28656005859375	2	495.286943	988.559333	0.098235	4.8654E-05	-0.32089	-0.00015894	-0.22266	-0.00011028	495.2867927615451	67.123	2.1847	67.123	66.714	68.898	0					130	55	5	0	0	0	0.14024	1	8014	8014		101.6	5.7855	1	21018000	+		28283	19994	19498	19539	32611	32611					0.06459528591381059
ISFVPISIN	9	Unmodified	_ISFVPISIN_					0	0	0			REV__nc|ENSG00000020922|P49959-2|MRE11	REV__nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.286865234375	2	495.286943	988.559333	-0.13546	-6.7092E-05	-0.29395	-0.00014559	-0.42941	-0.00021268	495.28680979725357	67.491	1.8866	67.203	66.791	68.678	-0.28834					134	47	6	0	0	0	0.11092	1	8045	8045		108.09	6.8349	1	20618000	+		28284	19994	19498	19539	32612	32612					0.06459528591381059
ISFVPISIN	9	Unmodified	_ISFVPISIN_					0	0	0			REV__nc|ENSG00000020922|P49959-2|MRE11	REV__nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2869873046875	2	495.286943	988.559333	0.28041	0.00013888	-0.074394	-3.6847E-05	0.20601	0.00010204	495.28680280311136	67.466	0.95113	67.211	66.87	67.821	-0.25516					62	22	4	0	0	0	0.70156	1	7761	7761		45.972	3.108	1	5314400	+		28285	19994	19498	19539	32613	32613					0.06459528591381059
ISFYNVTEM	9	Oxidation (M)	_ISFYNVTEM(Oxidation (M))_		ISFYNVTEM(1)		ISFYNVTEM(120)	0	0	1		ENSG00000179046|ENST00000682553|TRIML2;chr4:188104932-188105180|220|10.44|0.2|5.7|-|ENST00000512729|TRIML2,TRIML2;chr4:188099175-188101056|229|12.55|0.3|5.38|-|ENST00000512729|TRIML2,TRIML2;chr4:188091941-188097061|202|10.38|0.22|5.59|-|ENST00000512729|TRIML2,TRIML2	ENSG00000179046|ENST00000682553|TRIML2	ENSG00000179046|ENST00000682553|TRIML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.2719116210938	2	560.254982	1118.49541	-0.67811	-0.00037992	-0.61411	-0.00034406	-1.2922	-0.00072398	560.2549164085468	93.183	0.21	93.178	92.99	93.2	-0.0042038					6	4	2	0	0	0	0.018983	1	11793	11793		116.9	52.696	1	106250			28286	394	19499	19540	32614	32614		8			-0.05909619627891516
ISFYNVTEM	9	Oxidation (M)	_ISFYNVTEM(Oxidation (M))_		ISFYNVTEM(1)		ISFYNVTEM(110)	0	0	1		ENSG00000179046|ENST00000682553|TRIML2;chr4:188104932-188105180|220|10.44|0.2|5.7|-|ENST00000512729|TRIML2,TRIML2;chr4:188099175-188101056|229|12.55|0.3|5.38|-|ENST00000512729|TRIML2,TRIML2;chr4:188091941-188097061|202|10.38|0.22|5.59|-|ENST00000512729|TRIML2,TRIML2	ENSG00000179046|ENST00000682553|TRIML2	ENSG00000179046|ENST00000682553|TRIML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2713623046875	2	560.254982	1118.49541	-1.5316	-0.00085806	-3.2094	-0.0017981	-4.7409	-0.0026561	560.7553987853763	93.123	0.13132	92.983	92.873	93.004	-0.13995					4	2	2	0	0	0	0.017891	1	11441	11441		108.09	43.88	1	17192			28287	394	19499	19540	32615	32615		8			-0.05909619627891516
ISGALKKAGL	10	Unmodified	_ISGALKKAGL_					0	0	0		ENSG00000167315|ENST00000285093|ACAA2;ENST00000419045.1_1_X:48634410-48634758:-|nuORF	ENSG00000167315|ENST00000285093|ACAA2	ENSG00000167315|ENST00000285093|ACAA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.3081970214844	2	479.30821	956.601866	0.4978	0.0002386	-0.25889	-0.00012409	0.23891	0.00011451	479.30782594177003	20.686	0.78246	20.519	20.049	20.832	-0.16774					39	15	4	0	0	0	0.88896	1	582	582		54.776	1.4249	1	495990			28288	7671	19500	19541	32616	32616					0.12182923719592509
ISGEDTSTVST	11	Unmodified	_ISGEDTSTVST_					0	0	0		ENST00000515024.5_1_3:129599348-129612357:-|nuORF	ENST00000515024.5_1_3:129599348-129612357:-|nuORF	ENST00000515024.5_1_3:129599348-129612357:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2869873046875	2	548.753858	1095.49316	-0.91	-0.00049937	-2.0853	-0.0011443	-2.9953	-0.0016437	549.2538766909853	48.407	1.3068	48.131	47.344	48.65	-0.27598					75	35	3	0	0	0	0.024762	1	4735	4735		45.972	8.8131	1	303170			28289	15892	19501	19542	32617	32617					-0.05076376831993912
ISGEMRSRGV	10	Unmodified	_ISGEMRSRGV_					0	0	0			REV__ENST00000570044.5_1_16:57653623-57675539:+|nuORF	REV__ENST00000570044.5_1_16:57653623-57675539:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.8111572265625	2	546.28494	1090.55533	-0.95438	-0.00052136	0.20867	0.00011399	-0.74571	-0.00040737	546.2852418299483	91.588	0.38463	91.576	91.363	91.748	-0.012383					21	8	3	0	0	0	0.03519	1	11560	11560		39.253	0	1	273580	+		28290	35383	19502	19543	32618	32618					0.013671158260194716
ISGFENKI	8	Unmodified	_ISGFENKI_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.S734L|1|0.35|ENSG00000162607|chr1:62450824-62450824|C/T|missense_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.26629638671875	2	454.247818	906.481082	1.2702	0.00057699	0.85232	0.00038717	2.1225	0.00096415	454.2485304710784	63.063	0.39989	63.117	62.974	63.373	0.054104					15	10	2	0	0	0	0.027866	1	7290	7290		96.19	0	1	229270			28291	6961	19503	19544	32619	32619					0.024100960061332444
ISGFYFTQ	8	Unmodified	_ISGFYFTQ_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2822570800781	2	481.734543	961.454533	0.31256	0.00015057	-0.72961	-0.00035148	-0.41705	-0.00020091	481.7339854163425	46.326	0.49709	46.326	46.09	46.587	0					29	13	3	0	0	0	0.027866	1	4565	4565		37.159	10.363	1	673730			28292	6676	19504	19545	32620	32620					-0.027735928851939207
ISGICEAPSPQ	11	Unmodified	_ISGICEAPSPQ_					0	0	0		ENST00000546421.1_1_12:98909108-98909923:-|nuORF;ENST00000548760.2_1_12:98909161-98909923:-|nuORF	ENST00000546421.1_1_12:98909108-98909923:-|nuORF	ENST00000546421.1_1_12:98909108-98909923:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8140869140625	2	551.265881	1100.51721	-0.83452	-0.00046004	1.7044	0.00093957	0.86986	0.00047952	551.2668046016097	93.226	0.71875	93.222	92.862	93.581	-0.0042038					27	16	2	0	0	0	0.02475	1	11832	11832		35.152	12.11	1	168300			28293	16510	19505	19546	32621	32621					-0.02902814879325888
ISGIITMLD	9	Unmodified	_ISGIITMLD_					0	0	0			REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2557067871094	2	481.764986	961.515419	-0.04265	-2.0547E-05	-3.057	-0.0014727	-3.0996	-0.0014933	481.76305579342153	48.906	0.48153	48.724	48.595	49.076	-0.18206					25	12	3	0	0	0	0.024436	1	4867	4867		38.806	0	1	525370	+		28294	24916	19506	19547	32622	32622					0.033121761027246066
ISGILAALSV	10	Unmodified	_ISGILAALSV_					0	0	0		GPN3|p.A161V|1|0.22|ENSG00000111231|chr12:110455899-110455899|G/A|missense_variant	GPN3|p.A161V|1|0.22|ENSG00000111231|chr12:110455899-110455899|G/A|missense_variant	GPN3|p.A161V|1|0.22|ENSG00000111231|chr12:110455899-110455899|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.26312255859375	2	472.294768	942.574983	1.018	0.0004808	-1.1054	-0.00052208	-0.087409	-4.1283E-05	472.29416717891996	62.882	0.71019	62.936	62.557	63.267	0.054104					29	17	2	0	0	0	0.03519	1	7211	7211		42.396	1.618	1	1215300			28295	17688	19507	19548	32623	32623					0.1013981510842541
ISGISKTSL	9	Unmodified	_ISGISKTSL_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.26873779296875	2	453.26875	904.522947	-0.40478	-0.00018348	0.10514	4.7656E-05	-0.29964	-0.00013582	453.26874970372995	25.723	0.94118	25.496	25.105	26.046	-0.22683					57	23	5	0	0	0	0.2101	1	1264	1264		87.696	5.4559	1	5795500			28296	6612	19508	19549	32624	32624					0.06686651694678858
ISGISKTSL	9	Unmodified	_ISGISKTSL_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.2686767578125	2	453.26875	904.522947	-0.20789	-9.4229E-05	-0.023279	-1.0552E-05	-0.23117	-0.00010478	453.2686672616233	25.48	0.95597	25.31	24.912	25.867	-0.17078					56	23	4	0	0	0	0.2101	1	1222	1222		87.696	7.9839	1	4749600			28297	6612	19508	19549	32625	32625					0.06686651694678858
ISGISKTSL	9	Unmodified	_ISGISKTSL_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.2686462402344	2	453.26875	904.522947	-0.16381	-7.4252E-05	-0.25917	-0.00011748	-0.42299	-0.00019173	453.26858276920603	25.553	0.99335	25.382	24.95	25.943	-0.17151					65	24	5	0	0	0	0.10174	1	1203	1203		110.12	7.3465	1	5149600			28298	6612	19508	19549	32626	32626					0.06686651694678858
ISGKKHTEDTI	11	Unmodified	_ISGKKHTEDTI_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5099182128906	3	410.222582	1227.64592	0.0026105	1.0709E-06	1.2353	0.00050676	1.2379	0.00050783	410.2229180356863	28.372	0.74036	28.367	27.966	28.706	-0.0042					27	17	2	0	0	0	0.02475	1	1645	1645		30.139	0	1	181280			28299	6713	19509	19550	32627	32627					0.04119863355299458
ISGLLHSITLL	11	Unmodified	_ISGLLHSITLL_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.858642578125	2	583.860806	1165.70706	-1.4127	-0.00082485	-1.8817	-0.0010987	-3.2945	-0.0019235	583.8595208920531	97.016	1.112	97.016	96.615	97.727	0					84	24	5	0	0	0	0.93459	2	12375	12375;12400		49.536	1.8787	1	1406200			28300	4267	19510	19551	32628;32629	32628					0.13083420125371958
ISGLRDNSIK	10	Unmodified	_ISGLRDNSIK_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3168334960938	2	551.814387	1101.61422	-0.19875	-0.00010967	-1.7502	-0.0009658	-1.949	-0.0010755	551.8136784219424	24.893	0.48137	24.719	24.554	25.035	-0.17484					25	10	4	0	0	0	0.03519	1	1105	1105		75.043	8.614	1	153360			28301	1489	19511	19552	32630	32630					0.06747915391974857
ISGLRDNSIK	10	Unmodified	_ISGLRDNSIK_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.814387	1101.61422	-0.55829	-0.00030807	-1.2697	-0.00070062	-1.828	-0.0010087	551.8140592952891	25.112	0.39667	24.885	24.708	25.105	-0.22683	0.083166	0.00020491	NaN	75.043	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167010			28302	1489	19511	19552							0.06747915391974857
ISGPLAVTGQ	10	Unmodified	_ISGPLAVTGQ_					0	0	0		ENST00000518816.5_1_8:21924386-21926775:+|nuORF	ENST00000518816.5_1_8:21924386-21926775:+|nuORF	ENST00000518816.5_1_8:21924386-21926775:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2504577636719	2	471.766374	941.518196	0.40473	0.00019094	-2.987	-0.0014092	-2.5823	-0.0012182	471.76468554127047	23.713	0.86175	23.511	23.195	24.057	-0.20193					34	19	3	0	0	0	0.03519	1	1040	1040		28.081	0.19925	1	124580			28303	15934	19512	19553	32631	32631					0.04509767551917321
ISGQRLTLA	9	Unmodified	_ISGQRLTLA_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	479.787641	957.56073	0.62728	0.00030096	-1.3361	-0.00064106	-0.70885	-0.0003401	479.7866568792227	51.752	1.3128	51.633	50.852	52.165	-0.11875					66	34	3	0	0	0	0.024397	1	5270	5270		56.721	18.91	1	1320400			28304	4256;18250	19513	19554	32632	32632					0.08025162680144149
ISGQRLTLA	9	Unmodified	_ISGQRLTLA_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.787641	957.56073	-2.0982	-0.0010067	2.0536	0.00098529	-0.044642	-2.1419E-05	479.78853820278425	52.018	0.87766	51.749	51.361	52.238	-0.26903	0.062643	0.00081861	NaN	56.721	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368300			28305	4256;18250	19513	19554							0.08025162680144149
ISGQVLRAEF	10	Unmodified	_ISGQVLRAEF_					0	0	0			REV__ENSG00000132646|ENST00000379143|PCNA	REV__ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.271484375	2	560.31148	1118.60841	-0.68644	-0.00038462	3.33	0.0018658	2.6436	0.0014812	560.3129969301679	93.331	1.0865	93.326	92.819	93.906	-0.0042038					84	25	5	0	0	0	0.03519	1	11829	11829		98.629	31.136	1	1350000	+		28306	23302	19514	19555	32633	32633					0.053848168803369845
ISGQVLRAEF	10	Unmodified	_ISGQVLRAEF_					0	0	0			REV__ENSG00000132646|ENST00000379143|PCNA	REV__ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2715454101562	2	560.31148	1118.60841	-0.39002	-0.00021853	2.9433	0.0016492	2.5533	0.0014307	560.3128408356837	93.343	1.1282	93.351	92.844	93.972	0.0077286					76	26	4	0	0	0	0.03519	1	11794	11794		98.629	16.389	1	1238900	+		28307	23302	19514	19555	32634	32634					0.053848168803369845
ISGRGRYKIF	10	Unmodified	_ISGRGRYKIF_					0	0	0		ENST00000570035.5_1_16:72604348-72698865:-|nuORF	ENST00000570035.5_1_16:72604348-72698865:-|nuORF	ENST00000570035.5_1_16:72604348-72698865:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	598.8505859375	2	598.848564	1195.68258	0.37783	0.00022627	2.0687	0.0012388	2.4466	0.0014651	598.849704993701	96.766	1.0662	96.643	96.352	97.418	-0.12305					64	23	4	0	0	0	0.74632	1	11964	11964		64.207	2.0999	1	1211300			28308	17017	19515	19556	32635	32635					0.09256204762482412
ISGRLKTSP	9	Unmodified	_ISGRLKTSP_					0	0	0		nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.75335693359375	2	479.787641	957.56073	0.017034	8.1727E-06	-1.3987	-0.00067108	-1.3817	-0.0006629	479.786800304908	48.122	0.80619	48.122	47.779	48.585	0					53	23	3	0	0	0	0.024374	1	4870	4870		40.778	0	1	2025100			28309	18438	19516	19557	32636	32636					0.08025162680155518
ISGRLKTSP	9	Unmodified	_ISGRLKTSP_					0	0	0		nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75390625	2	479.787641	957.56073	-0.53007	-0.00025432	-0.54998	-0.00026387	-1.0801	-0.0005182	479.7873003845867	47.991	0.77615	48.058	47.777	48.553	0.066795					49	21	3	0	0	0	0.024374	1	4794	4794		49.442	3.4896	1	1935400			28310	18438	19516	19557	32637	32637					0.08025162680155518
ISGRQGLALL	10	Unmodified	_ISGRQGLALL_					0	0	0		ENST00000561611.2_1_16:72513659-72698865:-|nuORF	ENST00000561611.2_1_16:72513659-72698865:-|nuORF	ENST00000561611.2_1_16:72513659-72698865:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8025512695312	2	514.316566	1026.61858	-0.18599	-9.5658E-05	-0.22158	-0.00011396	-0.40757	-0.00020962	514.3161378768649	59.394	0.44688	59.48	59.171	59.617	0.085682					17	11	2	0	0	0	0.03519	1	6704	6704		35.152	10.633	1	221680			28311	16831	19517	19558	32638	32638					0.10633424605566688
ISGRTAVPR	9	Unmodified	_ISGRTAVPR_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7859191894531	2	478.785433	955.556313	-0.055329	-2.6491E-05	0.63552	0.00030428	0.58019	0.00027779	478.7857091029597	91.227	1.7279	91.215	90.702	92.43	-0.012375					76	41	4	0	0	0	0.77768	1	11533	11533		40.778	1.972	1	2240500	+		28312	20082	19518	19559	32639	32639					0.0767569825721921
ISGSAFVKH	9	Unmodified	_ISGSAFVKH_					0	0	0		ENST00000601957.5_1_19:35433558-35435739:+|nuORF;ENSG00000168661|ENST00000601142|ZNF30;nc|ENSG00000168661|P17039-2|ZNF30	ENST00000601957.5_1_19:35433558-35435739:+|nuORF	ENST00000601957.5_1_19:35433558-35435739:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7823791503906	2	473.261259	944.507966	-0.17952	-8.4961E-05	0.35989	0.00017032	0.18037	8.5361E-05	473.26110586580086	23.589	0.84505	23.409	23.157	24.002	-0.17989					42	19	4	0	0	0	0.024263	1	942	942		34.173	3.6689	1	1131900			28313	7851	19519	19560	32640	32640					0.03349204617336454
ISGSSDIVFV	10	Unmodified	_ISGSSDIVFV_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2713012695312	2	512.27149	1022.52843	0.51992	0.00026634	-1.4352	-0.00073523	-0.91531	-0.00046889	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	1.0665	1	13669	13669		37.159	0.13063	1	6752000	+		28314	28706	19520	19561	32641	32641					0.018063304864767815
ISGSSDIVFV	10	Unmodified	_ISGSSDIVFV_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.27099609375	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	1.1166	1	13610	13610		30.504	1.3336	1	6386000	+		28315	28706	19520	19561	32642	32642					0.018063304864767815
ISGSSDIVFV	10	Unmodified	_ISGSSDIVFV_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2708740234375	2	512.27149	1022.52843	-1.3044	-0.00066821	0.14151	7.249E-05	-1.1629	-0.00059572	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	1.0142	1	13290	13290		44.117	8.9161	1	5095800	+		28316	28706	19520	19561	32643	32643					0.018063304864767815
ISHASAIKK	9	Unmodified	_ISHASAIKK_					0	0	0			REV__ENST00000415522.1_1_X:22454332-22454536:+|nuORF	REV__ENST00000415522.1_1_X:22454332-22454536:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.305908203125	2	477.790184	953.565815	-0.34849	-0.00016651	-0.078272	-3.7398E-05	-0.42676	-0.0002039	477.7899296607685	23.177	0.44683	23.253	23.114	23.561	0.076241					14	10	2	0	0	0	0.024477	1	886	886		27.882	5.9224	1	93162	+		28317	32055	19521	19562	32644	32644					0.08717466542748298
ISHEKPQSL	9	Unmodified	_ISHEKPQSL_					0	0	0			REV__ENSG00000179165|ENST00000454782|PXT1	REV__ENSG00000179165|ENST00000454782|PXT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.3082275390625	2	519.782556	1037.55056	0.0062791	3.2638E-06	0.89254	0.00046393	0.89882	0.00046719	519.7828599870576	49.281	0.58391	49.281	49.072	49.656	0					24	15	2	0	0	0	0.020937	1	5068	5068		98.629	0	1	230640	+		28318	27244	19522	19563	32645	32645					0.0332855495489639
ISHIGKLR	8	Unmodified	_ISHIGKLR_					0	0	0		ENST00000512780.2_1_4:4459120-4543730:-|nuORF;ENSG00000168818|ENST00000306200|STX18	ENST00000512780.2_1_4:4459120-4543730:-|nuORF	ENST00000512780.2_1_4:4459120-4543730:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.2746276855469	2	462.292894	922.571235	0.38717	0.00017899	-4.3919	-0.0020303	-4.0047	-0.0018513	462.29104914549777	21.598	0.14286	21.421	21.303	21.445	-0.17721					4	2	2	0	0	0	0.027866	1	679	679		53.351	14.545	1	12315			28319	7869	19523	19564	32646	32646					0.10685190125241206
ISHLGLNSPP	10	Unmodified	_ISHLGLNSPP_					0	0	0			REV__ENST00000524719.1_2_8:144694837-144695083:-|nuORF	REV__ENST00000524719.1_2_8:144694837-144695083:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2731323242188	2	517.785099	1033.55564	0.70016	0.00036253	3.275	0.0016957	3.9751	0.0020583	517.7863593110643	70.98	0.56767	70.766	70.563	71.131	-0.21425					24	12	3	0	0	0	0.03519	1	8260	8260		20.947	0	1	170070	+		28320	34395	19524	19565	32647	32647					0.04020858817534645
ISHVAYRVL	9	Unmodified	_ISHVAYRVL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7870483398438	2	529.311284	1056.60801	-0.81992	-0.00043399	3.1184	0.0016506	2.2985	0.0012166	529.3155229319815	91.368	0.25223	91.244	91.076	91.328	-0.12341					8	5	2	0	0	0	0.024506	1	11194	11194		30.504	13.139	1	31815			28321	9860	19525	19566	32648	32648					0.081974419511198
ISIAIADVAV	10	Unmodified	_ISIAIADVAV_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.227294921875	2	486.292225	970.569897	-0.027194	-1.3224E-05	2.5903	0.0012596	2.5631	0.0012464	486.29444511097483	54.778	0.55587	54.548	54.118	54.674	-0.23087					21	15	2	0	0	0	0.03519	1	5850	5850		49.442	2.9848	1	499510	+		28322	25033	19526	19567	32649	32649					0.08343511245789159
ISIDPVERS	9	Unmodified	_ISIDPVERS_					0	0	0			REV__ENSG00000164500|ENST00000297001|SPATA48	REV__ENSG00000164500|ENST00000297001|SPATA48	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.27667236328125	2	508.274564	1014.53457	0.27283	0.00013868	3.4843	0.001771	3.7571	0.0019096	508.2761872869712	78.29	1.7717	78.058	77.668	79.439	-0.23141					81	41	4	0	0	0	0.16468	1	9366	9366		96.19	8.494	1	3411100	+		28323	25762	19527	19568	32650	32650					0.02788848718000736
ISIEGFYSGDS	11	Unmodified	_ISIEGFYSGDS_					0	0	0			REV__ENSG00000198515|ENST00000514170|CNGA1;REV__nc|ENSG00000144191|Q16281-2|CNGA3	REV__nc|ENSG00000144191|Q16281-2|CNGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.7702026367188	2	587.766768	1173.51898	-0.54351	-0.00031946	-3.008	-0.001768	-3.5515	-0.0020875	587.7641673072931	79.532	0.37564	79.312	79.16	79.535	-0.21923					15	8	2	0	0	0	0.024785	1	9525	9525		37.812	0	1	86892	+		28324	28428;24315	19528	19569	32651	32651					-0.06083482589679079
ISIENSKFN	9	Unmodified	_ISIENSKFN_					0	0	0		ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15	ENSG00000133863|ENST00000643185|TEX15	ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2944946289062	2	526.274564	1050.53457	-0.048989	-2.5782E-05	0.23316	0.00012271	0.18418	9.6927E-05	526.2745674126489	58.442	1.0073	58.252	58.056	59.063	-0.19018					31	24	2	0	0	0	0.024367	1	6414	6414		62.107	23.301	1	997610			28325	4736	19529	19570	32652	32652					0.011328487180207958
ISIEVCQIAD	10	Carbamidomethyl (C)	_ISIEVC(Carbamidomethyl (C))QIAD_	ISIEVC(1)QIAD		ISIEVC(80)QIAD		0	1	0		ENSG00000105675|ENST00000262623|ATP4A	ENSG00000105675|ENST00000262623|ATP4A	ENSG00000105675|ENST00000262623|ATP4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.2896118164062	2	574.286814	1146.55907	-1.0807	-0.00062061	-3.5811	-0.0020566	-4.6618	-0.0026772	574.2848482048162	65.353	1.5172	65.151	64.982	66.499	-0.20253					67	37	2	0	0	0	0.03519	1	7448	7448		80.455	25.678	1	1010800			28326	2706	19530	19571	32653	32653	35				-0.00834259190787634
ISIGIYGY	8	Unmodified	_ISIGIYGY_					0	0	0			REV__ENSG00000176495|ENST00000641998|OR5AN1	REV__ENSG00000176495|ENST00000641998|OR5AN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.2795715332031	2	443.239461	884.46437	0.092051	4.0801E-05	-3.0197	-0.0013385	-2.9277	-0.0012977	443.2372763127015	53.976	1.3084	53.779	53.422	54.73	-0.19739					74	37	3	0	0	0	0.027866	1	5836	5836		90.939	8.6985	1	5813300	+		28327	27026	19531	19572	32654	32654					0.017515951201858115
ISIGPIQPEV	10	Unmodified	_ISIGPIQPEV_					0	0	0			REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3	REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.2457885742188	2	526.802957	1051.59136	-0.70731	-0.00037261	-1.9854	-0.0010459	-2.6927	-0.0014185	526.8012813372594	38.108	0.50612	37.89	37.644	38.15	-0.21848					24	14	2	0	0	0	0.03519	1	3102	3102		28.081	15.875	1	481400	+		28328	20715	19532	19573	32655	32655					0.06762896274517516
ISIIFTPL	8	Unmodified	_ISIIFTPL_					0	0	0			REV__ENSG00000100739|ENST00000216629|BDKRB1	REV__ENSG00000100739|ENST00000216629|BDKRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.24847412109375	2	452.281129	902.547705	-0.50933	-0.00023036	0.59538	0.00026928	0.086046	3.8917E-05	452.28137260531173	33.269	0.456	33.276	33.005	33.461	0.0066261					22	12	3	0	0	0	0.027866	1	2339	2339		47.916	0	1	278700	+		28329	21147	19533	19574	32656	32656					0.09253331568038448
ISIIGYAHLL	10	Unmodified	_ISIIGYAHLL_					0	0	0			REV__nc|ENSG00000050130|Q9P055-2|JKAMP	REV__nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.326904296875	2	550.329142	1098.64373	-0.11854	-6.5236E-05	-3.5525	-0.001955	-3.671	-0.0020203	550.3277555338492	99.243	1.119	99.074	98.417	99.536	-0.16862					47	25	3	0	0	0	1.0541	1	12293	12293		38.806	4.6336	1	186930	+		28330	20154	19534	19575	32657	32657					0.09835479408138781
ISILEPMNNI	10	Unmodified	_ISILEPMNNI_					0	0	0			REV__ENSG00000173114|ENST00000308478|LRRN3	REV__ENSG00000173114|ENST00000308478|LRRN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	572.3055419921875	2	572.307549	1142.60055	0.02785	1.5938E-05	0.6227	0.00035637	0.65054	0.00037231	572.3075502848291	105.19	1.1875	105.19	104.65	105.84	0.00097656					59	40	3	0	0	0	0.64538	2	13442	13442;13462		71.877	0.58177	1	429330	+		28331	26739	19535	19576	32658;32659	32658					0.034949215685401214
ISIMYREV	8	Unmodified	_ISIMYREV_					0	0	0		nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170;ENSG00000120925|ENST00000527424|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.75689697265625	2	505.770603	1009.52665	-0.14439	-7.3028E-05	3.4184	0.0017289	3.274	0.0016559	505.7724234446493	100.84	0.38274	100.84	100.73	101.12	0					12	8	2	0	0	0	0.027866	1	12915	12915		26.693	0	1	30107			28332	3847	19536	19577	32660	32660					0.022269981968747743
ISINKGMPN	9	Unmodified	_ISINKGMPN_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2925109863281	2	487.260402	972.506251	-1.3821	-0.00067342	1.5059	0.00073377	0.12386	6.035E-05	487.26089878454314	55.385	0.4147	55.483	55.22	55.634	0.098015					16	10	2	0	0	0	0.024495	1	6044	6044		14.137	0.68308	1	78369	+		28333	36711	19537	19578	32661	32661					0.018898275370702322
ISIQQELY	8	Unmodified	_ISIQQELY_					0	0	0		nc|ENSG00000124092|Q8NI51-9|CTCFL;nc|ENSG00000124092|Q8NI51-4|CTCFL;nc|ENSG00000124092|Q8NI51-2|CTCFL;nc|ENSG00000124092|Q8NI51-8|CTCFL;ENSG00000124092|ENST00000243914|CTCFL;nc|ENSG00000124092|Q8NI51-3|CTCFL;nc|ENSG00000124092|Q8NI51-7|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.3128662109375	2	497.266207	992.517862	-0.29548	-0.00014693	0.93506	0.00046497	0.63957	0.00031804	497.2662671690926	73.672	0.55296	73.395	73.092	73.645	-0.27689					26	13	3	0	0	0	0.027866	1	8690	8690		31.955	0	1	235100			28334	18233	19538	19579	32662	32662					0.021303478320419345
ISISAVQW	8	Unmodified	_ISISAVQW_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.2503356933594	2	452.25036	902.486168	0.69443	0.00031406	-0.50526	-0.00022851	0.18917	8.5552E-05	452.2499443689293	77.09	0.57314	76.822	76.424	76.997	-0.26806					26	13	3	0	0	0	0.24001	2	9166	9153;9166		133.81	27.397	1	862970			28335	1452	19539	19580	32663;32664	32664					0.031023998687601306
ISISAVQW	8	Unmodified	_ISISAVQW_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2509460449219	2	452.25036	902.486168	0.56667	0.00025628	-0.55082	-0.00024911	0.015846	7.1662E-06	452.2499942676526	77.064	0.86722	76.812	76.314	77.181	-0.25162					38	21	3	0	0	0	0.25873	3	9179	9157;9167;9179		129.68	23.267	1	1066400			28336	1452	19539	19580	32665;32666;32667	32667					0.031023998687601306
ISISAVQW	8	Unmodified	_ISISAVQW_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2502136230469	2	452.25036	902.486168	-0.33667	-0.00015226	0.53873	0.00024364	0.20206	9.1383E-05	452.2503860889166	76.951	1.1987	76.782	75.853	77.052	-0.16853					48	28	4	0	0	0	0.25873	3	9135	9125;9135;9147		129.68	10.74	1	1271700			28337	1452	19539	19580	32668;32669;32670	32669					0.031023998687601306
ISISKSTE	8	Unmodified	_ISISKSTE_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.54840087890625	2	432.737283	863.460012	-1.0638	-0.00046033	2.8135	0.0012175	1.7497	0.00075716	432.73840586872166	24.557	0.62664	24.51	24.264	24.891	-0.047148					23	13	2	0	0	0	0.027866	1	1094	1094		21.96	5.4867	1	72793			28338	1021	19540	19581	32671	32671					0.02282085906631437
ISITAAVPEV	10	Unmodified	_ISITAAVPEV_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.31304931640625	2	500.289682	998.564812	0.33924	0.00016972	4.4829	0.0022428	4.8222	0.0024125	500.79248360260715	76.579	0.12275	76.591	76.488	76.611	0.011635					4	2	2	0	0	0	0.03519	1	9365	9365		104.75	5.3716	1	98515	+		28339	25213	19541	19582	32672	32672					0.06547207383187015
ISITDKILG	9	Unmodified	_ISITDKILG_					0	0	0		ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2921142578125	2	480.292225	958.569897	-0.45661	-0.00021931	0.54306	0.00026083	0.086448	4.152E-05	480.2924108636501	65.139	0.87646	65.139	64.69	65.566	0					75	24	5	0	0	0	0.14024	1	7716	7716		101.6	0	1	19938000			28340	12333	19542	19583	32673	32673					0.08895511245827947
ISITDKILG	9	Unmodified	_ISITDKILG_					0	0	0		ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2925109863281	2	480.292225	958.569897	-0.68956	-0.00033119	0.85128	0.00040886	0.16171	7.7669E-05	480.2925776146441	65.381	1.0103	65.108	64.748	65.758	-0.27282					84	27	5	0	0	0	0.057894	1	7716	7716		125.81	12.402	1	15450000			28341	12333	19542	19583	32674	32674					0.08895511245827947
ISITDKILG	9	Unmodified	_ISITDKILG_					0	0	0		ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2920837402344	2	480.292225	958.569897	-0.36883	-0.00017714	0.60604	0.00029108	0.23721	0.00011393	480.2924384469498	65.062	1.1116	65.1	64.595	65.706	0.037376					78	30	4	0	0	0	0.057894	1	7627	7627		125.81	12.402	1	14867000			28342	12333	19542	19583	32675	32675					0.08895511245827947
ISIYVMIN	8	Unmodified	_ISIYVMIN_					0	0	0			REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7772216796875	2	476.762246	951.50994	0.82392	0.00039281	-1.4934	-0.00071198	-0.66944	-0.00031917	476.76141201114837	69.237	0.71971	68.944	68.789	69.509	-0.29291					25	18	2	0	0	0	0.027866	1	8286	8286		24.203	0	1	119620	+		28343	26436	19543	19584	32676	32676					0.0322449731091865
ISKALVAYY	9	Unmodified	_ISKALVAYY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.2942504882812	2	514.294768	1026.57498	-1.1039	-0.00056772	0.57455	0.00029549	-0.52934	-0.00027224	514.2949924853282	53.779	1.9445	53.642	53.319	55.264	-0.13617					146	56	5	0	0	0	0.03849	5	5657	5634;5644;5657;5669;5684		134.81	58.87	1	28642000			28344	2642	19544	19585	32677;32678;32679;32680;32681	32679					0.06275815108415372
ISKALVAYY	9	Unmodified	_ISKALVAYY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.2948608398438	2	514.294768	1026.57498	-0.12967	-6.6689E-05	-0.38767	-0.00019938	-0.51734	-0.00026607	514.2945123670552	53.969	1.7551	53.724	53.421	55.176	-0.2453					143	52	5	0	0	0	0.021872	5	5693	5657;5668;5681;5693;5707		148.04	67.849	1	30197000			28345	2642	19544	19585	32682;32683;32684;32685;32686	32685					0.06275815108415372
ISKALVAYY	9	Unmodified	_ISKALVAYY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2944946289062	2	514.294768	1026.57498	-0.29293	-0.00015065	-0.2444	-0.0001257	-0.53733	-0.00027635	514.2946066472397	53.832	1.8692	53.635	53.35	55.219	-0.19739					146	53	5	0	0	0	0.021872	5	5650	5638;5650;5662;5674;5688		148.04	59.4	1	30093000			28346	2642	19544	19585	32687;32688;32689;32690;32691	32688					0.06275815108415372
ISKEAKNL	8	Unmodified	_ISKEAKNL_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1;ROCK1-DCC|1|fusion	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.76898193359375	2	451.768917	901.523281	-0.19642	-8.8737E-05	0.059184	2.6737E-05	-0.13724	-6.2E-05	451.76888848152095	27.443	1.1052	27.287	26.93	28.035	-0.15664					65	26	4	0	0	0	0.47665	1	1497	1497		87.754	5.4493	1	4352800			28347	1373	19545	19586	32692	32692					0.0685807141450141
ISKEVNHPI	9	Unmodified	_ISKEVNHPI_					0	0	0			REV__ACACA|p.P949H|1|0.13|ENSG00000278540|chr17:37243456-37243456|G/T|missense_variant	REV__ACACA|p.P949H|1|0.13|ENSG00000278540|chr17:37243456-37243456|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7930297851562	2	518.792924	1035.57129	-1.3156	-0.00068252	0.27792	0.00014418	-1.0377	-0.00053834	518.793110653343	51.777	1.4702	51.508	51.203	52.673	-0.26903					105	38	5	0	0	0	0.23085	1	5313	5313		84.916	2.675	1	22848000	+		28348	19051	19546	19587	32693	32693					0.05493145334571636
ISKEVSALE	9	Unmodified	_ISKEVSALE_					0	0	0			REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	REV__nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.2711181640625	2	488.27149	974.528426	1.529	0.00074656	-2.406	-0.0011748	-0.87698	-0.0004282	488.27039060874796	23.065	0.54526	22.874	22.664	23.209	-0.19117					29	11	3	0	0	0	0.35646	1	857	857		68.787	4.5796	1	513570	+		28349	27073	19547	19588	32694	32694					0.04014330486484141
ISKFYSKP	8	Unmodified	_ISKFYSKP_					0	0	0			REV__nc|ENSG00000143575|O00165-2|HAX1	REV__nc|ENSG00000143575|O00165-2|HAX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7886962890625	2	485.273835	968.533118	-0.25027	-0.00012145	-3.7259	-0.0018081	-3.9761	-0.0019295	485.27173471863307	47.215	0.69202	47.215	46.93	47.622	0					25	19	2	0	0	0	0.027866	1	4682	4682		71.296	0	1	824120	+		28350	36737	19548	19589	32695	32695					0.04759259419893169
ISKGQQLFDG	10	Unmodified	_ISKGQQLFDG_					0	0	0			REV__nc|ENSG00000182652|Q8NH05|OR4Q3	REV__nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.7892456054688	2	546.787838	1091.56112	-0.62347	-0.0003409	3.4211	0.0018706	2.7976	0.0015297	546.7896837786515	30.949	0.87985	30.77	30.41	31.29	-0.17818					36	21	2	0	0	0	0.61732	1	2022	2022		75.043	6.2565	1	2692000	+		28351	27501	19549	19590	32696	32696					0.01900537609321873
ISKLNQKI	8	Unmodified	_ISKLNQKI_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2994689941406	2	472.300384	942.586216	1.1669	0.00055111	-0.93255	-0.00044044	0.23433	0.00011067	472.29972040983233	18.133	0.39262	17.977	17.805	18.197	-0.15637					18	7	4	0	0	0	1.0338	1	265	265		31.955	0	1	237330			28352	970	19550	19591	32697	32697					0.112626372025602
ISKLNQKI	8	Unmodified	_ISKLNQKI_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.300384	942.586216	3.6654	0.0017312	-5.6415	-0.0026645	-1.9761	-0.00093329	472.2973444105694	18.112	0.14679	18.112	17.99	18.136	0	0.067379	-0.0035519	NaN	31.955	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5581.2			28353	970	19550	19591							0.112626372025602
ISKMSRWTL	9	Unmodified	_ISKMSRWTL_					0	0	0		ENST00000343666.5_1_9:140098762-140099170:-|nuORF	ENST00000343666.5_1_9:140098762-140099170:-|nuORF	ENST00000343666.5_1_9:140098762-140099170:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.7947998046875	2	561.310426	1120.6063	-0.15195	-8.5291E-05	0.67502	0.00037889	0.52307	0.0002936	561.812464516999	71.263	0.53304	71.273	70.976	71.509	0.010735					17	13	2	0	0	0	0.024319	1	8579	8579		56.721	5.3856	1	81936			28354	12532	19551	19592	32698	32698					0.05082064870885006
ISKPLLYA	8	Unmodified	_ISKPLLYA_					0	0	0		ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.7776794433594	2	452.778754	903.542954	0.52394	0.00023723	-3.4788	-0.0015751	-2.9548	-0.0013379	452.7770744736323	41.103	1.1868	41.103	40.8	41.987	0					83	33	4	0	0	0	0.81662	1	3663	3663		57.811	0	1	4481200			28355	8508	19552	19593	32699	32699					0.0873244742526822
ISKPLLYA	8	Unmodified	_ISKPLLYA_					0	0	0		ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.777587890625	2	452.778754	903.542954	0.18723	8.4775E-05	-3.2269	-0.0014611	-3.0397	-0.0013763	452.77721620855925	41.318	0.9185	41.341	41.04	41.958	0.023006					66	25	3	0	0	0	0.71833	1	3668	3668		65.803	2.4969	1	4572400			28356	8508	19552	19593	32700	32700					0.0873244742526822
ISKPPGVAL	9	Unmodified	_ISKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.27642822265625	2	441.276378	880.538203	-0.28683	-0.00012657	0.44334	0.00019564	0.1565	6.9062E-05	441.2764403510083	48.626	1.5374	48.626	47.971	49.508	0					94	43	4	0	0	0	0.33245	3	4967	4967;4978;4991		71.296	19.96	1	3554700			28357	18123	19553	19594	32701;32702;32703	32701					0.09315563282518724
ISKPPGVAL	9	Unmodified	_ISKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2766418457031	2	441.276378	880.538203	-0.23165	-0.00010222	0.52008	0.0002295	0.28843	0.00012728	441.2764654496709	48.785	1.4574	48.632	48.023	49.481	-0.15277					86	40	4	0	0	0	0.4752	1	4985	4985		60.972	10.947	1	2926600			28358	18123	19553	19594	32704	32704					0.09315563282518724
ISKPPGVAL	9	Unmodified	_ISKPPGVAL_					0	0	0		nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	nc|ENSG00000100146|P56693|SOX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.27655029296875	2	441.276378	880.538203	-0.18577	-8.1977E-05	0.42578	0.00018789	0.24	0.00010591	441.2764290250164	48.5	1.4087	48.567	47.936	49.345	0.066795					90	38	4	0	0	0	0.20967	2	4880	4880;4903		87.754	24.448	1	3121900			28359	18123	19553	19594	32705;32706	32705					0.09315563282518724
ISKQVYMK	8	Unmodified	_ISKQVYMK_					0	0	0			REV__ENST00000343813.9_1_1:6283540-6283621:-|nuORF	REV__ENST00000343813.9_1_1:6283540-6283621:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7664489746094	2	498.78097	995.547388	-0.38339	-0.00019123	-2.9206	-0.0014567	-3.304	-0.001648	498.7795952912752	41.783	0.11329	41.553	41.471	41.584	-0.23041					4	2	2	0	0	0	0.027866	1	3705	3705		23.042	4.7181	1	85912	+		28360	30672	19554	19595	32707	32707					0.04943588576543334
ISKRLGAEW	9	Unmodified	_ISKRLGAEW_					0	0	0		SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant;ENSG00000181449|ENST00000325404|SOX2;ENSG00000168875|ENST00000306087|SOX14;ENSG00000125285|ENST00000376945|SOX21;ENSG00000182968|ENST00000330949|SOX1	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.3007202148438	2	530.300916	1058.58728	-1.3955	-0.00074003	-0.083858	-4.447E-05	-1.4794	-0.0007845	530.3009353912443	38.809	1.4495	38.645	38.357	39.806	-0.16458					103	38	4	0	0	0	0.11727	5	3226	3215;3226;3239;3252;3264		106.68	37.896	1	19928000			28361	9043	19555	19596	32708;32709;32710;32711;32712	32709					0.06032851571490028
ISKRLGAEW	9	Unmodified	_ISKRLGAEW_					0	0	0		SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant;ENSG00000181449|ENST00000325404|SOX2;ENSG00000168875|ENST00000306087|SOX14;ENSG00000125285|ENST00000376945|SOX21;ENSG00000182968|ENST00000330949|SOX1	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.3003540039062	2	530.300916	1058.58728	-1.0769	-0.00057107	0.017959	9.5237E-06	-1.0589	-0.00056154	530.3009809420239	38.832	1.8253	38.61	38.255	40.081	-0.22202					118	47	4	0	0	0	0.16539	5	3237	3213;3225;3237;3252;3264		96.034	26.406	1	16137000			28362	9043	19555	19596	32713;32714;32715;32716;32717	32715					0.06032851571490028
ISKRLGAEW	9	Unmodified	_ISKRLGAEW_					0	0	0		SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant;ENSG00000181449|ENST00000325404|SOX2;ENSG00000168875|ENST00000306087|SOX14;ENSG00000125285|ENST00000376945|SOX21;ENSG00000182968|ENST00000330949|SOX1	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3001708984375	2	530.300916	1058.58728	-0.11775	-6.2443E-05	-1.2184	-0.00064611	-1.3361	-0.00070855	530.30029371709	38.844	2.053	38.618	38.11	40.163	-0.2257					131	54	4	0	0	0	0.10464	5	3233	3207;3219;3233;3246;3259		109.48	38.198	1	17282000			28363	9043	19555	19596	32718;32719;32720;32721;32722	32720					0.06032851571490028
ISKRLKSSL	9	Unmodified	_ISKRLKSSL_					0	0	0		ENST00000476655.5_1_9:130884882-130886033:-|nuORF	ENST00000476655.5_1_9:130884882-130886033:-|nuORF	ENST00000476655.5_1_9:130884882-130886033:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.3139038085938	2	516.332216	1030.64988	0.22782	0.00011763	-2.1168	-0.001093	-1.889	-0.00097536	516.3304962269536	98.001	0.54247	97.999	97.724	98.267	-0.0020828					25	12	3	0	0	0	0.0245	1	12459	12459		29.17	10.067	1	208270			28364	15092	19556	19597	32723	32723					0.13577997639663408
ISKRRSKF	8	Unmodified	_ISKRRSKF_					0	0	0		GPR34|p.K373Nfs*5|1|0.12|ENSG00000171659|chrX:41696751-41696752|-/C|frameshift_variant;ENSG00000171659|ENST00000378142|GPR34	GPR34|p.K373Nfs*5|1|0.12|ENSG00000171659|chrX:41696751-41696752|-/C|frameshift_variant	GPR34|p.K373Nfs*5|1|0.12|ENSG00000171659|chrX:41696751-41696752|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.25140380859375	2	511.3169	1020.61925	-0.098428	-5.0328E-05	-3.7006	-0.0018922	-3.7991	-0.0019425	511.3148906909027	47.097	0.63074	47	46.754	47.385	-0.096653					36	16	3	0	0	0	0.027866	1	4578	4578		29.15	0	1	393810			28365	8180	19557	19598	32724	32724					0.10976264045280004
ISKSATTPEP	10	Unmodified	_ISKSATTPEP_					0	0	0		ENSG00000151834|ENST00000381620|GABRA2;nc|ENSG00000151834|P47869-2|GABRA2	ENSG00000151834|ENST00000381620|GABRA2	ENSG00000151834|ENST00000381620|GABRA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2843017578125	2	515.774396	1029.53424	0.61471	0.00031705	-2.0337	-0.0010489	-1.419	-0.00073187	515.7738544794663	82.149	0.94738	82.039	81.605	82.552	-0.11006					62	22	5	0	0	0	0.03519	1	10270	10270		84.916	8.0689	1	759940			28366	6233	19558	19599	32725	32725					0.020654289981166585
ISKSDTKTY	9	Unmodified	_ISKSDTKTY_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7481079101562	2	521.774396	1041.53424	-0.20688	-0.00010795	1.007	0.00052541	0.80008	0.00041746	521.7751211394083	36.934	0.43763	36.714	36.447	36.885	-0.2195					22	10	3	0	0	0	0.024209	1	2928	2928		56.721	14.247	1	183860	+		28367	36925	19559	19600	32726	32726					0.015134289981688198
ISKSIVLEP	9	Unmodified	_ISKSIVLEP_					0	0	0		ENSG00000125266|ENST00000646441|EFNB2	ENSG00000125266|ENST00000646441|EFNB2	ENSG00000125266|ENST00000646441|EFNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.78466796875	2	493.30005	984.585547	-0.06341	-3.128E-05	-0.98404	-0.00048543	-1.0475	-0.00051671	493.2996364666956	56.587	0.54724	56.587	56.388	56.936	0					36	15	4	0	0	0	0.022587	1	6344	6344		84.916	2.6105	1	4354200			28368	4093	19560	19601	32727	32727					0.09263797762844206
ISKSSALSI	9	Unmodified	_ISKSSALSI_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-3|MOV10	REV__nc|ENSG00000155363|Q9HCE1-3|MOV10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.2686462402344	2	453.26875	904.522947	-0.40478	-0.00018348	0.10514	4.7656E-05	-0.29964	-0.00013582	453.26874970372995	25.723	0.94118	25.496	25.105	26.046	-0.22683					57	23	5	0	0	0	0.26966	1	1240	1240		79.713	2.395	1	5795500	+		28369	36803	19561	19602	32728	32728					0.06686651694678858
ISKTISDPE	9	Unmodified	_ISKTISDPE_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7811279296875	2	495.261122	988.507691	-0.61731	-0.00030573	3.0029	0.0014872	2.3856	0.0011815	495.26245228754027	28.578	0.4152	28.578	28.362	28.778	0					20	9	3	0	0	0	0.024427	1	1646	1646		26.693	15.827	1	133350	+		28370	24890	19562	19603	32729	32729					0.012977401068042127
ISKTISDPE	9	Unmodified	_ISKTISDPE_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.261122	988.507691	-0.14108	-6.9873E-05	2.5548	0.0012653	2.4137	0.0011954	495.26214937019773	28.309	0.36649	28.39	28.208	28.574	0.080811	-0.11414	2.6573E-05	NaN	19.997	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141310	+		28371	24890	19562	19603							0.012977401068042127
ISKVQPSSYA	10	Unmodified	_ISKVQPSSYA_					0	0	0		ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.2911987304688	2	540.290214	1078.56587	-0.087064	-4.704E-05	0.28305	0.00015293	0.19599	0.00010589	540.2901176193333	56.38	0.50923	56.164	55.92	56.429	-0.21607					25	12	3	0	0	0	0.66532	1	6103	6103		69.628	12.995	1	1167900			28372	5583	19563	19604	32730	32730					0.029734217520854145
ISKVSLKKLE	10	Unmodified	_ISKVSLKKLE_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.8504638671875	2	572.868631	1143.72271	-0.024773	-1.4192E-05	2.916	0.0016705	2.8912	0.0016563	572.870253991497	18.094	0.19796	17.887	17.813	18.011	-0.20669					5	3	2	0	0	0	0.03519	1	268	268		95.815	10.654	1	22599	+		28373	20383	19564	19605	32731	32731					0.15659706642418314
ISKYTNKNP	9	Unmodified	_ISKYTNKNP_					0	0	0			REV__ENSG00000057149|ENST00000283752|SERPINB3	REV__ENSG00000057149|ENST00000283752|SERPINB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7742309570312	2	532.790381	1063.56621	-0.42455	-0.0002262	0.56076	0.00029877	0.13621	7.2572E-05	532.7905952001896	50.524	0.52706	50.374	50.162	50.689	-0.14916					47	15	4	0	0	0	0.024253	1	5319	5319		61.691	17.314	1	1602300	+		28374	20219	19565	19606	32732	32732					0.036968414719467546
ISLAALRLD	9	Unmodified	_ISLAALRLD_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.3088073730469	2	486.297842	970.581131	-0.23664	-0.00011508	-0.1339	-6.5114E-05	-0.37054	-0.00018019	486.2976658706401	64.528	1.111	64.325	63.871	64.982	-0.20254					65	27	4	0	0	0	0.024367	1	7285	7285		36.447	6.129	1	789220	+		28375	22025	19566	19607	32733	32733					0.09466333339935318
ISLAALRLD	9	Unmodified	_ISLAALRLD_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.297842	970.581131	-0.43006	-0.00020914	0.21668	0.00010537	-0.21338	-0.00010377	486.29785022933794	64.604	0.58978	64.369	64.098	64.687	-0.2345	0.0011565	0.00032021	NaN	36.447	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608670	+		28376	22025	19566	19607							0.09466333339935318
ISLAALRLD	9	Unmodified	_ISLAALRLD_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.297842	970.581131	-0.2903	-0.00014117	-0.29407	-0.000143	-0.58437	-0.00028418	486.29764585656613	64.65	0.54646	64.394	64.115	64.661	-0.25562	0.026334	-0.00017654	NaN	36.447	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555670	+		28377	22025	19566	19607							0.09466333339935318
ISLADAGTYY	10	Unmodified	_ISLADAGTYY_					0	0	0		ENST00000453770.1_1_20:1514156-1534896:-|nuORF;ENSG00000125900|ENST00000381623|SIRPD	ENST00000453770.1_1_20:1514156-1534896:-|nuORF	ENST00000453770.1_1_20:1514156-1534896:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.707275390625	2	537.261122	1072.50769	-0.81845	-0.00043972	0.25828	0.00013876	-0.56017	-0.00030096	537.2611339059608	57.204	0.81969	57.037	56.786	57.606	-0.1672					46	21	3	0	0	0	0.03519	1	6200	6200		39.253	0.23134	1	3024100			28378	14553	19567	19608	32734	32734					-0.02566259893183087
ISLARLILA	9	Unmodified	_ISLARLILA_					0	0	0		sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.7718505859375	2	485.326402	968.638252	-0.37604	-0.0001825	0.12308	5.9732E-05	-0.25296	-0.00012277	485.32631396589045	76.054	0.73825	75.781	75.345	76.084	-0.27266					29	18	2	0	0	0	0.024495	1	9047	9047		34.173	25.941	1	101470			28379	37954	19568	19609	32735	32735					0.1526780061633417
ISLARLILA	9	Unmodified	_ISLARLILA_					0	0	0		sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.326402	968.638252	-0.19625	-9.5246E-05	-0.00066759	-3.24E-07	-0.19692	-9.557E-05	485.326232727181	75.796	0.50308	75.538	75.319	75.822	-0.25866	-0.066642	0.000229	NaN	34.173	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186890			28380	37954	19568	19609							0.1526780061633417
ISLASSKSI	9	Unmodified	_ISLASSKSI_					0	0	0		nc|ENSG00000155363|Q9HCE1-3|MOV10	nc|ENSG00000155363|Q9HCE1-3|MOV10	nc|ENSG00000155363|Q9HCE1-3|MOV10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.2684631347656	2	453.26875	904.522947	-0.20789	-9.4229E-05	-0.023279	-1.0552E-05	-0.23117	-0.00010478	453.2686672616233	25.48	0.95597	25.31	24.912	25.867	-0.17078					56	23	4	0	0	0	0.14024	1	1209	1209		101.6	0	1	4749600			28381	18399	19569	19610	32736	32736					0.06686651694678858
ISLCLHSR	8	Unmodified	_ISLCLHSR_					0	0	0		ENST00000422066.5_1_3:176782793-176915000:-|nuORF	ENST00000422066.5_1_3:176782793-176915000:-|nuORF	ENST00000422066.5_1_3:176782793-176915000:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2801513671875	2	464.755287	927.496021	-0.12092	-5.6196E-05	-4.3719	-0.0020319	-4.4928	-0.0020881	464.7528325783433	24.518	0.17245	24.344	24.21	24.383	-0.17484					5	3	2	0	0	0	0.027866	1	1071	1071		42.396	17.877	1	11212			28382	14003	19571	19611	32737	32737					0.029372646024853566
ISLCPHLPC	9	Unmodified	_ISLCPHLPC_					0	0	0		MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|24|2|sense	MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|24|2|sense	MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|24|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.76922607421875	2	491.746073	981.477594	0.41349	0.00020333	-4.0561	-0.0019946	-3.6426	-0.0017912	491.7429670639821	42.23	0.16798	42.23	42.154	42.322	0					7	4	2	0	0	0	0.024183	1	3873	3873		60.294	1.512	1	71766			28383	17963	19572	19612	32738	32738					-0.013886133637356579
ISLCRKQV	8	Unmodified	_ISLCRKQV_					0	0	0			REV__ENST00000459961.1_1_1:15653545-15655159:+|nuORF	REV__ENST00000459961.1_1_1:15653545-15655159:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.755615234375	2	473.778762	945.542971	0.71266	0.00033764	3.2458	0.0015378	3.9585	0.0018755	473.78074336011014	54.626	0.37729	54.42	54.197	54.575	-0.20613					16	9	2	0	0	0	0.027866	1	5800	5800		18.324	0	1	93311	+		28384	32836	19573	19613	32739	32739					0.06802124153637124
ISLCVKKKK	9	Unmodified	_ISLCVKKKK_					0	0	0			REV__MSTC_dup783|chr4:9823989-9824389:+|1.054793696432554|0.4477763399962282|1.24|517.0|14|3|sense	REV__MSTC_dup783|chr4:9823989-9824389:+|1.054793696432554|0.4477763399962282|1.24|517.0|14|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3248291015625	2	523.841362	1045.66817	0.32104	0.00016817	1.5345	0.00080383	1.8555	0.000972	523.842473121496	79.287	0.2058	79.04	78.947	79.153	-0.2465					5	4	2	0	0	0	0.024541	1	9479	9479		16.473	0	1	25679	+		28385	36396	19574	19614	32740	32740					0.14716416290002599
ISLDAFDN	8	Unmodified	_ISLDAFDN_					0	0	0			REV__ENSG00000162757|ENST00000294811|C1orf74	REV__ENSG00000162757|ENST00000294811|C1orf74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2351989746094	2	447.713808	893.413062	-0.21236	-9.5079E-05	-0.57977	-0.00025957	-0.79213	-0.00035465	447.71537618876636	26.971	0.23908	26.958	26.828	27.067	-0.012983					7	5	2	0	0	0	0.027866	1	1396	1396		25.574	4.6271	1	17615	+		28386	25487	19575	19615	32741	32741					-0.037907736445276896
ISLDAGNAALF	11	Unmodified	_ISLDAGNAALF_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2906494140625	2	546.290214	1090.56587	0.15243	8.3273E-05	-0.19923	-0.00010884	-0.046792	-2.5562E-05	546.2901128952682	97.301	1.5594	97.301	96.793	98.353	-3.8147E-05					86	35	4	0	0	0	0.1527	1	12359	12359		104.06	5.4274	1	1708600	+		28387	21255	19576	19616	32742	32742					0.024214217520693637
ISLDRSVND	9	Unmodified	_ISLDRSVND_					0	0	0		ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7830505371094	2	509.76182	1017.50909	-0.51711	-0.0002636	-1.9756	-0.0010071	-2.4927	-0.0012707	509.7605040629678	56.823	0.84202	56.823	56.424	57.266	0					56	23	4	0	0	0	0.024319	1	6323	6323		47.657	19.775	1	942480			28388	2983	19577	19617	32743	32743					0.0010337419556663008
ISLDWRIL	8	Unmodified	_ISLDWRIL_					0	0	0		ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.27667236328125	2	508.300384	1014.58622	0.11953	6.0755E-05	-1.4728	-0.00074864	-1.3533	-0.00068788	508.2998909651271	78.515	0.38483	78.283	78.091	78.476	-0.23141					13	8	2	0	0	0	0.027866	1	9366	9366		63.306	0	1	64250			28389	15179	19578	19618	32744	32744					0.07950637202554844
ISLDWRIL	8	Unmodified	_ISLDWRIL_					0	0	0		ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.300384	1014.58622	-0.011694	-5.9441E-06	-0.49291	-0.00025055	-0.50461	-0.00025649	508.3001672838216	78.66	0.30173	78.405	78.212	78.514	-0.25471	0.05178	0.00035611	NaN	63.306	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69613			28390	15179	19578	19618							0.07950637202554844
ISLDWRIL	8	Unmodified	_ISLDWRIL_					0	0	0		ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.300384	1014.58622	-0.090449	-4.5975E-05	-0.75508	-0.00038381	-0.84553	-0.00042978	508.300182025259	78.528	0.21524	78.372	78.212	78.427	-0.15591	0.018639	8.9593E-05	NaN	63.306	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28687			28391	15179	19578	19618							0.07950637202554844
ISLENSLRE	9	Unmodified	_ISLENSLRE_					0	0	0		ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENST00000446618.1_1_22:19245879-19246326:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7850952148438	2	530.785296	1059.55604	0.1767	9.3788E-05	-1.0424	-0.00055327	-0.86566	-0.00045948	530.7848552249928	43.083	1.8499	43.114	42.722	44.572	0.030823					125	51	4	0	0	0	0.20652	1	3972	3972		88.177	0.4805	1	5614800			28392	14458	19579	19619	32745	32745					0.028642337467317702
ISLESEPFLL	10	Unmodified	_ISLESEPFLL_					0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.7929077148438	2	574.315897	1146.61724	-1.6045	-0.0009215	2.7594	0.0015847	1.1548	0.00066324	574.3172949021042	31.327	0.7427	31.327	31.047	31.789	0					36	17	4	0	0	0	0.03519	1	2142	2142		49.442	8.6634	1	511400	+		28393	23361	19580	19620	32746	32746					0.049797457261547606
ISLFADDHDS	10	Unmodified	_ISLFADDHDS_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.285888671875	2	560.251286	1118.48802	-0.39055	-0.00021881	-2.4276	-0.0013601	-2.8182	-0.0015789	560.2499089763459	39.865	0.30644	39.715	39.553	39.859	-0.1497					13	7	2	0	0	0	0.03519	1	3422	3422		20.947	0	1	89722	+		28394	20637	19581	19621	32747	32747					-0.06648635903957256
ISLGLLFIR	9	Unmodified	_ISLGLLFIR_					0	0	0			REV__ENSG00000162630|ENST00000367434|B3GALT2	REV__ENSG00000162630|ENST00000367434|B3GALT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.314208984375	2	516.334227	1030.6539	1.245	0.00064282	-4.1542	-0.002145	-2.9092	-0.0015021	516.3320002720222	98.093	0.38239	97.968	97.687	98.069	-0.12413					17	9	2	0	0	0	0.024427	1	12122	12122		26.693	10.22	1	160370	+		28395	25467	19582	19622	32748	32748					0.1398008713335912
ISLGSKALMI	10	Unmodified	_ISLGSKALMI_					0	0	0		ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.257080078125	2	516.809728	1031.6049	-0.64014	-0.00033083	-3.0716	-0.0015874	-3.7117	-0.0019183	516.8079087728165	81.934	0.38475	81.793	81.528	81.912	-0.14081					15	8	2	0	0	0	0.03519	1	9843	9843		79.713	5.4575	1	93749			28396	5678	19583	19623	32749	32749					0.09036430782111893
ISLHNYRA	8	Unmodified	_ISLHNYRA_					0	0	0			REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79144287109375	2	487.264333	972.514114	-0.31671	-0.00015432	-0.75856	-0.00036962	-1.0753	-0.00052394	487.26409782242774	78.915	0.70759	78.915	78.616	79.323	0					26	16	2	0	0	0	0.027866	1	9743	9743		33.516	3.674	1	250990	+		28397	36686	19584	19624	32750	32750					0.026757228488463625
ISLHPWLP	8	Unmodified	_ISLHPWLP_					0	0	0		nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.77435302734375	2	481.776545	961.538538	0.097072	4.6767E-05	-3.9707	-0.001913	-3.8737	-0.0018662	481.774363414446	50.199	0.79285	50.048	49.596	50.388	-0.1512					40	22	2	0	0	0	0.027866	1	5152	5152		52.299	9.8247	1	1021700			28398	18854	19585	19625	32751	32751					0.056229830023767136
ISLHPWLP	8	Unmodified	_ISLHPWLP_					0	0	0		nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7730712890625	2	481.776545	961.538538	-0.57379	-0.00027644	-2.9658	-0.0014288	-3.5396	-0.0017053	481.7749644265953	49.901	0.7294	49.982	49.547	50.276	0.080994					35	20	2	0	0	0	0.027866	1	5060	5060		42.474	5.446	1	972340			28399	18854	19585	19625	32752	32752					0.056229830023767136
ISLHYWNN	8	Unmodified	_ISLHYWNN_					0	0	0		ENSG00000137634|ENST00000375478|NXPE4	ENSG00000137634|ENST00000375478|NXPE4	ENSG00000137634|ENST00000375478|NXPE4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2791137695312	2	523.756341	1045.49813	-0.91751	-0.00048055	-1.6323	-0.00085495	-2.5498	-0.0013355	523.7555162770785	39.018	0.31539	39.018	38.868	39.183	0					12	8	2	0	0	0	0.027866	1	3298	3298		25.45	0	1	87522			28400	5141	19586	19626	32753	32753					-0.02279983388052642
ISLIYKIEN	9	Unmodified	_ISLIYKIEN_					0	0	0			REV__ENSG00000225180|ENST00000637878|PVALEF	REV__ENSG00000225180|ENST00000637878|PVALEF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2862548828125	2	546.818607	1091.62266	0.26305	0.00014384	-1.0184	-0.0005569	-0.75539	-0.00041306	546.8181878820131	85.866	0.49865	85.866	85.543	86.042	0					19	11	2	0	0	0	0.024205	1	10763	10763		63.306	1.1989	1	84890	+		28401	28862	19587	19627	32754	32754					0.08051469308611559
ISLIYKIEN	9	Unmodified	_ISLIYKIEN_					0	0	0			REV__ENSG00000225180|ENST00000637878|PVALEF	REV__ENSG00000225180|ENST00000637878|PVALEF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.818607	1091.62266	-1.6377	-0.00089552	1.1716	0.00064068	-0.46604	-0.00025484	546.8195920449001	85.857	0.49709	85.881	85.575	86.072	0.023666	0.0071812	0.0014879	NaN	63.306	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87692	+		28402	28862	19587	19627							0.08051469308611559
ISLKGSDEKF	10	Unmodified	_ISLKGSDEKF_					0	0	0		ATR|p.G2319E|1|0.24|ENSG00000175054|chr3:142465182-142465182|C/T|missense_variant	ATR|p.G2319E|1|0.24|ENSG00000175054|chr3:142465182-142465182|C/T|missense_variant	ATR|p.G2319E|1|0.24|ENSG00000175054|chr3:142465182-142465182|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3024291992188	2	562.303321	1122.59209	0.13859	7.7932E-05	-1.4869	-0.00083611	-1.3483	-0.00075818	562.302480458896	23.747	0.68545	23.545	23.237	23.923	-0.20193					48	15	4	0	0	0	0.99657	1	977	977		46.457	1.4346	1	1320900			28403	162	19588	19628	32755	32755					0.035696909235639396
ISLKPLSF	8	Unmodified	_ISLKPLSF_					0	0	0		ENST00000319770.7_1_12:6775995-6776247:-|nuORF	ENST00000319770.7_1_12:6775995-6776247:-|nuORF	ENST00000319770.7_1_12:6775995-6776247:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.77752685546875	2	452.778754	903.542954	0.18723	8.4775E-05	-3.2269	-0.0014611	-3.0397	-0.0013763	452.77721620855925	41.318	0.9185	41.341	41.04	41.958	0.023006					66	25	3	0	0	0	0.53523	1	3643	3643		82.305	0	1	4572400			28404	12187	19589	19629	32756	32756					0.08732447425279588
ISLLAQNTSW	10	Unmodified	_ISLLAQNTSW_					0	0	0		ENST00000527590.5_1_11:119290120-119293859:-|nuORF;ENSG00000154096|ENST00000284240|THY1;ENST00000584021.1_1_11:119290120-119290366:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.802734375	2	566.803488	1131.59242	-0.23325	-0.00013221	0.12636	7.1623E-05	-0.10689	-6.0583E-05	566.8034845398859	78.275	1.028	78.02	77.701	78.729	-0.25471					65	23	4	0	0	0	0.0074023	4	9319	9310;9319;9331;9345		173.39	59.569	1	4150800			28405	6379	19590	19630	32757;32758;32759;32760	32758					0.031891106434159155
ISLLAQNTSW	10	Unmodified	_ISLLAQNTSW_					0	0	0		ENST00000527590.5_1_11:119290120-119293859:-|nuORF;ENSG00000154096|ENST00000284240|THY1;ENST00000584021.1_1_11:119290120-119290366:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.8033447265625	2	566.803488	1131.59242	0.5329	0.00030205	-0.53065	-0.00030077	0.0022534	1.2772E-06	566.8031070632613	78.258	1.3548	78.027	77.627	78.982	-0.23141					75	31	4	0	0	0	0.00015509	4	9339	9318;9328;9339;9352		199.89	75.811	1	3812100			28406	6379	19590	19630	32761;32762;32763;32764	32763					0.031891106434159155
ISLLAQNTSW	10	Unmodified	_ISLLAQNTSW_					0	0	0		ENST00000527590.5_1_11:119290120-119293859:-|nuORF;ENSG00000154096|ENST00000284240|THY1;ENST00000584021.1_1_11:119290120-119290366:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.8032836914062	2	566.803488	1131.59242	-0.06184	-3.5051E-05	-0.20252	-0.00011479	-0.26436	-0.00014984	566.803322313394	78.134	1.53	77.979	77.659	79.189	-0.15591					76	35	4	0	0	0	7.5011E-06	4	9312	9290;9301;9312;9327		228.31	95.55	1	4019700			28407	6379	19590	19630	32765;32766;32767;32768	32767					0.031891106434159155
ISLLFHQGHSV	11	Unmodified	_ISLLFHQGHSV_					0	0	0			REV__ENST00000534479.5_1_11:12023699-12030797:-|nuORF	REV__ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.7607116699219	3	413.227779	1236.66151	-1.117	-0.00046157	0.45065	0.00018622	-0.66634	-0.00027535	413.2279521978085	48.528	0.53875	48.252	47.966	48.505	-0.27598					32	14	3	0	0	0	0.024739	1	4837	4837		35.178	4.6094	1	298110	+		28408	34639	19591	19631	32769	32769					0.05264194663004673
ISLLFHQGHSV	11	Unmodified	_ISLLFHQGHSV_					0	0	0			REV__ENST00000534479.5_1_11:12023699-12030797:-|nuORF	REV__ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	413.227779	1236.66151	-0.54789	-0.0002264	0.002667	1.1021E-06	-0.54522	-0.0002253	413.22653018639613	48.124	0.73151	48.026	47.743	48.474	-0.097553	-0.097953	-0.0006345	NaN	35.178	46	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489520	+		28409	34639	19591	19631							0.05264194663004673
ISLLFHQGHSV	11	Unmodified	_ISLLFHQGHSV_					0	0	0			REV__ENST00000534479.5_1_11:12023699-12030797:-|nuORF	REV__ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	413.227779	1236.66151	0.27838	0.00011503	0.8126	0.00033579	1.091	0.00045082	413.2276274937812	48.281	0.5857	48.094	47.712	48.298	-0.18684	-0.029892	0.00036956	NaN	35.178	46	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439950	+		28410	34639	19591	19631							0.05264194663004673
ISLLFLLDD	9	Unmodified	_ISLLFLLDD_					0	0	0			REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2796020507812	2	524.799883	1047.58521	-0.82313	-0.00043198	1.513	0.000794	0.68983	0.00036202	524.8004970514497	78.017	1.6119	78.017	77.752	79.364	0					55	38	3	0	0	0	0.024354	1	9774	9774		38.806	1.647	1	307610	+		28411	26253	19592	19632	32770	32770					0.06332378042998243
ISLLKQNL	8	Unmodified	_ISLLKQNL_					0	0	0		nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-2|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7951354980469	2	464.794935	927.575317	-0.23953	-0.00011133	-0.031332	-1.4563E-05	-0.27087	-0.0001259	464.7948926828966	33.988	0.89589	33.781	33.511	34.406	-0.20696					74	22	5	0	0	0	0.46709	1	2484	2484		88.643	0	1	9653900			28412	3154	19593	19633	32771	32771					0.10863234828264012
ISLLLGSMIN	10	Unmodified	_ISLLLGSMIN_					0	0	0		ENST00000410107.5_1_6:10627023-10627191:+|nuORF	ENST00000410107.5_1_6:10627023-10627191:+|nuORF	ENST00000410107.5_1_6:10627023-10627191:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2770385742188	2	530.807185	1059.59982	-1.1633	-0.00061751	0.78024	0.00041416	-0.38309	-0.00020335	530.8076484875689	58.18	0.46431	58.006	57.859	58.323	-0.1749					26	12	4	0	0	0	0.03519	1	6558	6558		51.193	0	1	691600			28413	13804	19594	19634	32772	32772					0.07240126919509748
ISLLLIFY	8	Unmodified	_ISLLLIFY_					0	0	0		nc|ENSG00000113532|Q92187-2|ST8SIA4;ENSG00000113532|ENST00000231461|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2909851074219	2	491.304604	980.594655	-0.47005	-0.00023094	4.341	0.0021328	3.8709	0.0019018	491.30661646293873	20.641	0.42413	20.536	20.375	20.799	-0.10477					13	8	2	0	0	0	0.027866	1	537	537		35.201	8.5078	1	26039			28414	3300	19595	19635	32773	32773					0.10358191119178173
ISLLLIFY	8	Unmodified	_ISLLLIFY_					0	0	0		nc|ENSG00000113532|Q92187-2|ST8SIA4;ENSG00000113532|ENST00000231461|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	nc|ENSG00000113532|Q92187-2|ST8SIA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.304604	980.594655	-0.98737	-0.0004851	4.5972	0.0022586	3.6099	0.0017735	491.3069043272459	20.493	0.47844	20.493	20.323	20.801	0	-0.053187	0.00040278	NaN	52.299	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22075			28415	3300	19595	19635							0.10358191119178173
ISLLLPGYL	9	Unmodified	_ISLLLPGYL_					0	0	0		ENST00000357681.9_1_1:203709714-203709879:+|nuORF	ENST00000357681.9_1_1:203709714-203709879:+|nuORF	ENST00000357681.9_1_1:203709714-203709879:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.8061218261719	2	494.807511	987.600469	-0.41334	-0.00020452	-4.1939	-0.0020752	-4.6073	-0.0022797	494.8053332169201	81.812	1.1222	81.838	81.536	82.658	0.025711					56	26	3	0	0	0	0.88411	1	10118	10118		33.516	0	1	1425100			28416	12702	19596	19636	32774	32774					0.10617289630840787
ISLLVLKVM	9	Unmodified	_ISLLVLKVM_					0	0	0			REV__nc|ENSG00000138674|O94979-7|SEC31A	REV__nc|ENSG00000138674|O94979-7|SEC31A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2801208496094	2	508.332839	1014.65112	-0.73647	-0.00037437	2.6161	0.0013299	1.8797	0.0009555	508.3339939656835	48.192	0.20099	48.039	47.924	48.125	-0.15301					6	5	2	0	0	0	0.024523	1	4862	4862		29.15	16.943	1	98746	+		28417	36709	19597	19637	32775	32775					0.1443849568420319
ISLLYNATNG	10	Unmodified	_ISLLYNATNG_					0	0	0		nc|ENSG00000215127|Q58G82|SYT14P1	nc|ENSG00000215127|Q58G82|SYT14P1	nc|ENSG00000215127|Q58G82|SYT14P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.8088989257812	2	533.282389	1064.55022	0.19074	0.00010172	-0.26948	-0.00014371	-0.078743	-4.1993E-05	533.2823352670964	41.022	0.3975	40.899	40.653	41.051	-0.12317					17	10	2	0	0	0	0.03519	1	3645	3645		19.997	0	1	103650			28418	18720	19598	19638	32776	32776					0.020531352350417365
ISLLYYSY	8	Unmodified	_ISLLYYSY_					0	0	0		ENST00000585735.1_1_17:40342468-40343067:-|nuORF	ENST00000585735.1_1_17:40342468-40343067:-|nuORF	ENST00000585735.1_1_17:40342468-40343067:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.75335693359375	2	511.265676	1020.5168	-0.39667	-0.0002028	4.3211	0.0022093	3.9245	0.0020064	511.26656529410036	46.287	0.82701	46.026	45.486	46.313	-0.26118					36	21	3	0	0	0	0.027866	1	4389	4389		42.474	7.2737	1	313740			28419	17233	19599	19639	32777	32777					0.007361334631355021
ISLMAKIAP	9	Unmodified	_ISLMAKIAP_					0	0	0			REV__ENSG00000125780|ENST00000381458|TGM3	REV__ENSG00000125780|ENST00000381458|TGM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.3287353515625	2	472.285889	942.557224	0.022422	1.059E-05	4.0225	0.0018998	4.0449	0.0019104	472.28766617110006	22.407	0.79739	22.205	21.855	22.653	-0.20199					26	16	3	0	0	0	0.02435	1	814	814		34.173	7.3764	1	160330	+		28420	22843	19600	19640	32778	32778					0.08364776581902333
ISLMRAQW	8	Unmodified	_ISLMRAQW_					0	0	0			REV__ENST00000580188.1_2_17:62503129-62515542:+|nuORF	REV__ENST00000580188.1_2_17:62503129-62515542:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.7689514160156	2	502.770937	1003.52732	-0.73862	-0.00037136	-2.9187	-0.0014674	-3.6573	-0.0018388	502.76935679578094	65.754	1.0117	65.503	65.148	66.16	-0.25112					53	24	3	0	0	0	0.74904	1	7492	7492		63.306	11.971	1	3841000	+		28421	35512	19601	19641	32779	32779					0.025698376365880904
ISLNCVSEGH	10	Carbamidomethyl (C)	_ISLNC(Carbamidomethyl (C))VSEGH_	ISLNC(1)VSEGH		ISLNC(120)VSEGH		0	1	0		ENST00000564508.2_1_16:72461754-72462081:+|nuORF	ENST00000564508.2_1_16:72461754-72462081:+|nuORF	ENST00000564508.2_1_16:72461754-72462081:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2593994140625	2	558.26113	1114.50771	0.31026	0.00017321	-3.6526	-0.0020391	-3.3424	-0.0018659	558.2589797224895	85.106	2.0835	84.969	84.62	86.704	-0.13753					150	48	4	0	0	0	0.24462	2	10322	10322;10348		115.49	25.124	1	8489200			28422	16892	19602	19642	32780;32781	32780	223				-0.04496583164859658
ISLNLRLN	8	Unmodified	_ISLNLRLN_					0	0	0		ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2712707519531	2	471.790184	941.565815	-0.1206	-5.69E-05	-1.7888	-0.00084392	-1.9094	-0.00090082	471.7901380582927	64.723	0.48913	64.769	64.486	64.975	0.045502					17	12	2	0	0	0	0.027866	1	7545	7545		35.618	6.4687	1	216880			28423	5864	19603	19643	32782	32782					0.09269466542741611
ISLNLSHLD	9	Unmodified	_ISLNLSHLD_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.27764892578125	2	506.277106	1010.53966	0.15079	7.6343E-05	-0.17271	-8.744E-05	-0.021918	-1.1097E-05	506.2767570670643	57.299	0.80579	57.134	56.813	57.619	-0.16431					65	21	4	0	0	0	0.10174	1	6416	6416		110.12	6.0631	1	4502600	+		28424	24334	19604	19644	32783	32783					0.034811525806162535
ISLNRSLPDI	10	Unmodified	_ISLNRSLPDI_					0	0	0		nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;nc|ENSG00000164574|Q86SR1-3|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	nc|ENSG00000164574|Q86SR1-2|GALNT10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8448486328125	2	564.324588	1126.63462	0.27873	0.00015729	-1.6072	-0.00090696	-1.3284	-0.00074967	564.3233708555995	65.894	0.57847	65.894	65.566	66.145	0					27	14	3	0	0	0	0.03519	1	7825	7825		20.837	8.0254	1	260260			28425	7292	19605	19645	32784	32784					0.07637086051818187
ISLPFVVT	8	Unmodified	_ISLPFVVT_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.771240234375	2	438.265479	874.516405	-0.60119	-0.00026348	-3.868	-0.0016952	-4.4692	-0.0019587	438.2638493287786	22.624	0.59494	22.439	22.189	22.784	-0.18539					35	12	4	0	0	0	0.027866	1	835	835		30.504	0	1	179410			28426	4571	19606	19646	32785	32785					0.0741275853396246
ISLPPAAPGKE	11	Unmodified	_ISLPPAAPGKE_					0	0	0		ENSG00000130477|ENST00000519716|UNC13A;UNC13A|p.P389Qfs*115|1|0.36|ENSG00000130477|chr19:17656000-17656000|G/-|frameshift_variant;UNC13A|p.K404Sfs*100|1|0.23|ENSG00000130477|chr19:17655957-17655957|G/-|frameshift_variant	ENSG00000130477|ENST00000519716|UNC13A	ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.2901000976562	2	540.308406	1078.60226	-1.1104	-0.00059995	3.1766	0.0017163	2.0662	0.0011164	540.3100682753555	53.167	0.46406	53.262	53.092	53.556	0.095669					22	12	3	0	0	0	0.02474	1	5650	5650		40.058	22.693	1	495550			28427	4421	19607	19647	32786	32786					0.06610298648797652
ISLPRFKV	8	Unmodified	_ISLPRFKV_					0	0	0		ENSG00000114204|ENST00000264677|SERPINI2	ENSG00000114204|ENST00000264677|SERPINI2	ENSG00000114204|ENST00000264677|SERPINI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2893981933594	2	480.30547	958.596387	-0.16107	-7.7362E-05	-0.93981	-0.0004514	-1.1009	-0.00052876	480.3048678950788	65.971	0.422	66.001	65.699	66.121	0.030106					20	10	3	0	0	0	0.027866	1	7767	7767		53.351	2.016	1	93953			28428	3347	19608	19648	32787	32787					0.11543244927804608
ISLPVHKAS	9	Unmodified	_ISLPVHKAS_					0	0	0			REV__ENST00000295701.9_1_2:219449387-219452320:+|nuORF	REV__ENST00000295701.9_1_2:219449387-219452320:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2672424316406	2	476.284734	950.554916	-0.058418	-2.7824E-05	0.011433	5.4454E-06	-0.046985	-2.2378E-05	476.2847601932954	54.563	0.49301	54.417	54.077	54.57	-0.14609					17	13	2	0	0	0	0.021513	1	5816	5816		104.75	0	1	111850	+		28429	29982	19609	19649	32788	32788					0.07766064168470166
ISLRDGYVPPK	11	Unmodified	_ISLRDGYVPPK_					0	0	0		nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF;nc|ENSG00000167549|Q6QEF8-3|CORO6;nc|ENSG00000167549|Q6QEF8-2|CORO6;ENST00000459686.5_1_17:27942752-27944279:-|nuORF;ENST00000579388.5_1_17:27942752-27944279:-|nuORF;nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.23065185546875	3	415.571434	1243.69247	0.30581	0.00012708	-2.2595	-0.000939	-1.9537	-0.00081192	415.5705124530996	25.69	0.3014	25.771	25.664	25.966	0.08009					9	6	2	0	0	0	0.02473	1	1189	1189		26.75	14.817	1	51756			28430	14894	19610	19650	32789	32789					0.0803734797721063
ISLRGDVVAAV	11	Unmodified	_ISLRGDVVAAV_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3280029296875	2	550.327131	1098.63971	-0.30481	-0.00016774	-0.41951	-0.00023087	-0.72431	-0.00039861	550.326899312271	51.979	1.001	51.979	51.633	52.634	0					85	26	4	0	0	0	0.56299	1	5572	5572		72.243	1.427	1	11227000	+		28431	28417	19611	19651	32790	32790					0.09433389914420331
ISLSGMEKNL	10	Unmodified	_ISLSGMEKNL_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2899780273438	2	546.291899	1090.56925	-0.70276	-0.00038391	-2.325	-0.0012701	-3.0277	-0.001654	546.2905855380187	97.241	2.1195	97.241	96.748	98.867	0					97	48	4	0	0	0	0.097953	4	12416	12394;12405;12416;12430		136.27	13.893	1	1377700	+		28432	20481	19612	19652	32791;32792;32793;32794	32793					0.027583485344621295
ISLSGMEKNL	10	Unmodified	_ISLSGMEKNL_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2899780273438	2	546.291899	1090.56925	-0.09091	-4.9663E-05	-3.1102	-0.0016991	-3.2011	-0.0017487	546.2902501523324	97.162	2.6644	97.171	96.07	98.735	0.0089111					111	61	4	0	0	0	0.032721	2	12353	12353;12389		153.04	39.624	1	1572300	+		28433	20481	19612	19652	32795;32796	32795					0.027583485344621295
ISLSGMEKNL	10	Unmodified	_ISLSGMEKNL_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2899169921875	2	546.291899	1090.56925	0.15243	8.3273E-05	-3.2844	-0.0017942	-3.132	-0.001711	546.2901128952682	97.301	1.5594	97.301	96.793	98.353	-3.8147E-05					86	35	4	0	0	0	0.21865	1	12335	12335		118.74	17.49	1	1708600	+		28434	20481	19612	19652	32797	32797					0.027583485344621295
ISLTSGIAKGL	11	Unmodified	_ISLTSGIAKGL_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7788696289062	2	530.324057	1058.63356	0.2715	0.00014398	0.107	5.6746E-05	0.37851	0.00020073	530.3241252450633	86.004	0.47797	85.866	85.702	86.18	-0.13734					16	10	2	0	0	0	0.02474	1	10449	10449		26.063	10.057	1	93979			28435	1136	19613	19653	32798	32798					0.10658871682880999
ISLVLGGLPI	10	Unmodified	_ISLVLGGLPI_					0	0	0		ENSG00000267534|ENST00000646641|S1PR2	ENSG00000267534|ENST00000646641|S1PR2	ENSG00000267534|ENST00000646641|S1PR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.29779052734375	2	491.320786	980.627018	-0.10981	-5.3951E-05	0.23265	0.00011431	0.12284	6.0354E-05	491.320781747247	60.3	0.81822	60.3	59.988	60.807	0					53	21	4	0	0	0	0.03519	1	6970	6970		42.396	0	1	2867200			28436	10984	19614	19654	32799	32799					0.13592978522194699
ISLVYRLL	8	Unmodified	_ISLVYRLL_					0	0	0		nc|ENSG00000127325|Q8N1M1-1|BEST3;ENSG00000127325|ENST00000330891|BEST3	REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF	REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.28399658203125	2	488.813128	975.611703	-0.15235	-7.4472E-05	0.20882	0.00010207	0.056462	2.76E-05	488.8130695508362	55.951	0.73444	55.795	55.26	55.995	-0.15601					31	19	2	0	0	0	0.027866	1	6093	6093		40.573	0	1	228550			28437	34653	19615	19655	32800	32800					0.12292111724991628
ISLWGSINL	9	Unmodified	_ISLWGSINL_					0	0	0		ENST00000486995.5_1_5:71622537-71627146:+|nuORF;ENST00000493283.5_1_5:71616316-71627143:+|nuORF	ENST00000486995.5_1_5:71622537-71627146:+|nuORF	ENST00000486995.5_1_5:71622537-71627146:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.78240966796875	2	501.784567	1001.55458	-0.3627	-0.00018199	-3.0696	-0.0015403	-3.4323	-0.0017223	501.78311422641656	45.207	1.2281	45.207	44.758	45.986	0					95	35	4	0	0	0	0.27161	1	4383	4383		79.451	4.4077	1	7121700			28438	15356	19616	19656	32801	32801					0.05386644448606148
ISLYVGRSE	9	Unmodified	_ISLYVGRSE_					0	0	0			REV__GAPDHS|p.T170R|1|0.2|ENSG00000105679|chr19:35542378-35542378|C/G|missense_variant	REV__GAPDHS|p.T170R|1|0.2|ENSG00000105679|chr19:35542378-35542378|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.7799682617188	2	512.277106	1022.53966	-0.64466	-0.00033024	-0.10627	-5.4441E-05	-0.75093	-0.00038468	512.2762123129913	32.251	0.62462	32.251	31.869	32.494	0					29	15	3	0	0	0	0.024477	1	2162	2162		27.882	0	1	539790	+		28439	36061	19617	19657	32802	32802					0.0292915258062294
ISMGDHLW	8	Unmodified	_ISMGDHLW_					0	0	0		ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2997741699219	2	479.726195	957.437837	-0.88965	-0.00042679	0.16343	7.84E-05	-0.72622	-0.00034839	479.7261091029859	62.449	0.47297	62.267	61.959	62.432	-0.1818					29	12	3	0	0	0	0.027866	1	7034	7034		76.847	41.228	1	2181500			28440	4936	19618	19658	32803	32803					-0.042584170427858226
ISMGDHLW	8	Unmodified	_ISMGDHLW_					0	0	0		ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.726195	957.437837	0.21375	0.00010254	-2.2583	-0.0010834	-2.0446	-0.00098084	479.72480632008904	62.456	0.37495	62.235	62.045	62.42	-0.22097	-0.015963	-0.001591	NaN	76.847	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1005600			28441	4936	19618	19658							-0.042584170427858226
ISMLVAGND	9	Unmodified	_ISMLVAGND_					0	0	0		nc|ENSG00000158022|Q969Q1-2|TRIM63;ENSG00000158022|ENST00000374272|TRIM63	nc|ENSG00000158022|Q969Q1-2|TRIM63	nc|ENSG00000158022|Q969Q1-2|TRIM63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2636413574219	2	460.23131	918.448068	-0.067278	-3.0963E-05	-3.2663	-0.0015032	-3.3336	-0.0015342	460.2296851170111	41.935	0.51213	41.812	41.603	42.116	-0.12299					23	13	2	0	0	0	0.024292	1	3754	3754		32.812	7.3622	1	422070			28442	6639	19619	19659	32804	32804					-0.014418541082250158
ISMPDFDLHL	10	Unmodified	_ISMPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K4256E|1|0.15|ENSG00000124942|chr11:62521651-62521651|T/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.2918701171875	2	594.291899	1186.56925	0.018592	1.1049E-05	0.026109	1.5517E-05	0.044701	2.6565E-05	594.2917909844923	84.376	1.0586	84.238	83.889	84.948	-0.13789					39	13	4	0	0	0	0.57594	1	10191	10191		79.713	33.256	1	743160			28443	4084	19620	19660	32805	32805					-0.016576514655525898
ISMPDFDLHL	10	Unmodified	_ISMPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K4256E|1|0.15|ENSG00000124942|chr11:62521651-62521651|T/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	594.291899	1186.56925	0.0057414	3.4121E-06	0.34108	0.0002027	0.34682	0.00020611	594.2918284459073	84.439	0.72266	84.236	83.907	84.63	-0.20329	0.020464	0.00024851	NaN	79.713	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	697470			28444	4084	19620	19660							-0.016576514655525898
ISMPDFDLHL	10	Unmodified	_ISMPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K4256E|1|0.15|ENSG00000124942|chr11:62521651-62521651|T/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	594.291899	1186.56925	0.0093584	5.5616E-06	0.087383	5.1931E-05	0.096742	5.7493E-05	594.2917672351392	84.331	0.59829	84.173	83.932	84.53	-0.15869	-0.042817	-5.3034E-05	NaN	79.713	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722990			28445	4084	19620	19660							-0.016576514655525898
ISMREDHSF	9	Unmodified	_ISMREDHSF_					0	0	0		ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.2791748046875	2	561.255848	1120.49714	-0.6459	-0.00036251	-0.64101	-0.00035977	-1.2869	-0.00072228	561.7578686375361	84.91	0.41565	84.935	84.62	85.036	0.025528					15	9	3	0	0	0	0.024374	1	10564	10564		32.812	0	1	246380			28446	3900	19621	19661	32806	32806					-0.05828565819274445
ISMVCRKEI	9	Oxidation (M)	_ISM(Oxidation (M))VCRKEI_		ISM(1)VCRKEI		ISM(130)VCRKEI	0	0	1			REV__ENST00000317126.8_1_10:73976635-73976764:-|nuORF	REV__ENST00000317126.8_1_10:73976635-73976764:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.7899780273438	2	547.788469	1093.56239	1.0651	0.00058343	2.7313	0.0014962	3.7964	0.0020796	547.7900589219471	63.706	0.86008	63.76	63.41	64.27	0.054104					60	23	4	0	0	0	0.053401	2	7401	7389;7401		127.46	25.861	1	4183800	+		28447	30291	19622	19662	32807;32808	32808		867			0.019347123822171852
ISMVCRKEI	9	Oxidation (M)	_ISM(Oxidation (M))VCRKEI_					0	0	1			REV__ENST00000317126.8_1_10:73976635-73976764:-|nuORF	REV__ENST00000317126.8_1_10:73976635-73976764:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.788469	1093.56239	0.71438	0.00039133	3.9546	0.0021663	4.669	0.0025576	547.7906254870329	63.667	0.72322	63.667	63.41	64.133	0	-0.012476	0.0002346	NaN	127.46	74	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4260600	+		28448	30291	19622	19662				867			0.019347123822171852
ISMVCRKEI	9	Oxidation (M)	_ISM(Oxidation (M))VCRKEI_					0	0	1			REV__ENST00000317126.8_1_10:73976635-73976764:-|nuORF	REV__ENST00000317126.8_1_10:73976635-73976764:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	547.788469	1093.56239	-0.4522	-0.00024771	4.2443	0.002325	3.7921	0.0020773	547.7908050785622	63.863	0.79385	63.612	63.336	64.13	-0.25141	-0.067974	0.00055201	NaN	127.46	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4067100	+		28449	30291	19622	19662				867			0.019347123822171852
ISNADFIVPV	10	Unmodified	_ISNADFIVPV_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7957153320312	2	537.795132	1073.57571	-0.14268	-7.6734E-05	1.297	0.00069754	1.1544	0.00062081	537.7952221023786	88.486	1.5275	88.504	88.069	89.596	0.018555					88	35	6	0	0	0	0.42812	1	11076	11076		95.815	5.4453	1	1466700			28450	5760	19623	19663	32809	32809					0.0418660975747116
ISNAPSFMQF	10	Unmodified	_ISNAPSFMQF_					0	0	0			REV__ENST00000301785.5_1_11:62480620-62480758:-|nuORF	REV__ENST00000301785.5_1_11:62480620-62480758:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.2731323242188	2	571.270967	1140.52738	0.78772	0.00045	2.4398	0.0013938	3.2275	0.0018438	571.2721896753643	86.108	0.82256	85.966	85.541	86.364	-0.14217					43	18	3	0	0	0	0.74632	1	10465	10465		64.207	2.0999	1	469700	+		28451	30065	19624	19664	32810	32810					-0.03726207154068106
ISNAPSFMQF	10	Unmodified	_ISNAPSFMQF_					0	0	0			REV__ENST00000301785.5_1_11:62480620-62480758:-|nuORF	REV__ENST00000301785.5_1_11:62480620-62480758:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	571.270967	1140.52738	0.78772	0.00045	2.4398	0.0013938	3.2275	0.0018438	571.2721896753643	86.108	0.82256	85.966	85.541	86.364	-0.14217	-0.032528	-0.00036339	NaN	64.207	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469700	+		28452	30065	19624	19664							-0.03726207154068106
ISNDQAKVV	9	Unmodified	_ISNDQAKVV_					0	0	0			REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7782287597656	2	487.269281	972.52401	-0.66273	-0.00032293	-0.31301	-0.00015252	-0.97574	-0.00047545	487.26923384021677	56.628	0.58067	56.726	56.473	57.053	0.097897					29	16	3	0	0	0	0.024397	1	6252	6252		56.721	5.3856	1	332890	+		28453	37543	19625	19665	32811	32811					0.03664866063570571
ISNDQAKVV	9	Unmodified	_ISNDQAKVV_					0	0	0			REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.269281	972.52401	0.30204	0.00014718	-1.2006	-0.00058501	-0.89854	-0.00043783	487.26857458899474	57.145	0.42621	56.943	56.71	57.136	-0.20209	0.085637	-0.00070264	NaN	64.207	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558490	+		28454	37543	19625	19665							0.03664866063570571
ISNDQAKVV	9	Unmodified	_ISNDQAKVV_					0	0	0			REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.269281	972.52401	0.11499	5.6031E-05	-0.92775	-0.00045206	-0.81276	-0.00039603	487.2686216079784	57.21	0.4328	56.985	56.776	57.209	-0.2248	0.12775	-0.00043676	NaN	64.207	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464010	+		28455	37543	19625	19665							0.03664866063570571
ISNEFKVEV	9	Unmodified	_ISNEFKVEV_					0	0	0		ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF	ENSG00000171603|ENST00000377298|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7818603515625	2	532.784764	1063.55498	-1.0541	-0.00056163	0.12255	6.5291E-05	-0.9316	-0.00049634	532.7855429724899	45.748	3.1551	45.596	45.244	48.399	-0.15157					218	90	6	0	0	0	0.22902	1	4483	4483		85.161	1.5138	1	381720000			28456	8175	19626	19666	32812	32812					0.025740193777892273
ISNETPVLF	9	Unmodified	_ISNETPVLF_					0	0	0			REV__nc|ENSG00000163840|Q8TDB6-2|DTX3L	REV__nc|ENSG00000163840|Q8TDB6-2|DTX3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2740173339844	2	510.274032	1018.53351	-0.40398	-0.00020614	0.91934	0.00046911	0.51536	0.00026297	510.2742571408655	75.673	0.7471	75.414	75.075	75.822	-0.25865					49	18	3	0	0	0	0.50848	1	8979	8979		58.782	3.2778	1	1790100	+		28457	25645	19627	19667	32813	32813					0.024986343491036678
ISNFLYLCW	9	Unmodified	_ISNFLYLCW_					0	0	0			REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.7527465820312	2	579.786253	1157.55795	-0.73505	-0.00042617	2.7422	0.0015899	2.0072	0.0011637	579.7875065559223	75.059	0.29382	74.796	74.65	74.944	-0.26326					8	6	2	0	0	0	0.02435	1	8862	8862		42.396	13.247	1	145070	+		28458	33101	19628	19668	32814	32814					-0.014524287690392157
ISNHSRCI	8	Unmodified	_ISNHSRCI_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	465.234719	928.454884	-0.52261	-0.00024314	-1.5909	-0.00074015	-2.1135	-0.00098328	465.2341391709257	33.939	0.23454	33.939	33.816	34.05	0					7	5	2	0	0	0	0.027866	1	2502	2502		26.796	0	1	42840	+		28459	24489	19629	19669	32815	32815					-0.012204964369971094
ISNIAPPV	8	Unmodified	_ISNIAPPV_					0	0	0			REV__ENSG00000179134|ENST00000610417|SAMD4B	REV__ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	405.7398376464844	2	405.739628	809.464704	0.34565	0.00014024	0.21705	8.8065E-05	0.5627	0.00022831	405.7396197930862	31.628	0.93314	31.387	31.149	32.082	-0.24109					45	22	3	0	0	0	0.78609	1	2132	2132		60.294	5.5293	1	1596800	+		28460	27241	19630	19670	32816	32816					0.05235014840036456
ISNIAPPV	8	Unmodified	_ISNIAPPV_					0	0	0			REV__ENSG00000179134|ENST00000610417|SAMD4B	REV__ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	405.7398376464844	2	405.739628	809.464704	0.53092	0.00021541	-0.047167	-1.9138E-05	0.48375	0.00019628	405.73950596669766	31.581	0.98145	31.396	31.099	32.081	-0.18503					59	23	4	0	0	0	0.78609	1	2117	2117		60.294	0	1	1772200	+		28461	27241	19630	19670	32817	32817					0.05235014840036456
ISNIAPPV	8	Unmodified	_ISNIAPPV_					0	0	0			REV__ENSG00000179134|ENST00000610417|SAMD4B	REV__ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	405.73974609375	2	405.739628	809.464704	-0.58692	-0.00023814	1.117	0.00045321	0.53008	0.00021507	405.73999300360384	31.632	0.89464	31.479	31.232	32.127	-0.15231					50	21	4	0	0	0	0.78609	1	2106	2106		60.294	2.4827	1	1815600	+		28462	27241	19630	19670	32818	32818					0.05235014840036456
ISNIAPPV	8	Unmodified	_ISNIAPPV_					0	0	0			REV__ENSG00000179134|ENST00000610417|SAMD4B	REV__ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	405.739628	809.464704	0.34565	0.00014024	0.21705	8.8065E-05	0.5627	0.00022831	405.7396197930862	31.628	0.93314	31.387	31.149	32.082	-0.24109	-0.033496	-0.00020974	NaN	60.294	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1596800	+		28463	27241	19630	19670							0.05235014840036456
ISNIAPPV	8	Unmodified	_ISNIAPPV_					0	0	0			REV__ENSG00000179134|ENST00000610417|SAMD4B	REV__ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	405.739628	809.464704	0.53092	0.00021541	-0.047167	-1.9138E-05	0.48375	0.00019628	405.73950596669766	31.581	0.98145	31.396	31.099	32.081	-0.18503	-0.025077	-0.00042414	NaN	60.294	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1772200	+		28464	27241	19630	19670							0.05235014840036456
ISNIAPPV	8	Unmodified	_ISNIAPPV_					0	0	0			REV__ENSG00000179134|ENST00000610417|SAMD4B	REV__ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	405.739628	809.464704	-0.58692	-0.00023814	1.117	0.00045321	0.53008	0.00021507	405.73999300360384	31.632	0.89464	31.479	31.232	32.127	-0.15231	0.058573	0.00052056	NaN	60.294	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1815600	+		28465	27241	19630	19670							0.05235014840036456
ISNIQVNKV	9	Unmodified	_ISNIQVNKV_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.28631591796875	2	507.800749	1013.58694	-0.29526	-0.00014993	0.11653	5.9174E-05	-0.17873	-9.0757E-05	507.80076877303054	58.942	1.5296	58.755	58.093	59.622	-0.18795					73	37	3	0	0	0	0.024397	1	6404	6404		39.253	6.4404	1	1804800	+		28466	22025	19631	19671	32819	32819					0.08069431851617992
ISNIQVNKV	9	Unmodified	_ISNIQVNKV_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.28631591796875	2	507.800749	1013.58694	-0.38941	-0.00019774	0.39779	0.000202	0.0083779	4.2543E-06	507.80087332994594	57.887	0.95694	57.709	57.319	58.276	-0.17775					44	23	3	0	0	0	0.024397	1	6404	6404		39.253	6.4404	1	1004500	+		28467	22025	19631	19671	32820	32820					0.08069431851617992
ISNIQVNKV	9	Unmodified	_ISNIQVNKV_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.800749	1013.58694	-0.1235	-6.2716E-05	-0.011426	-5.8021E-06	-0.13493	-6.8518E-05	507.80067697938574	57.902	0.61786	57.712	57.295	57.913	-0.19017	-0.075728	-0.00069722	NaN	22.58	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1496300	+		28468	22025	19631	19671							0.08069431851617992
ISNIQVNKV	9	Unmodified	_ISNIQVNKV_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.800749	1013.58694	-0.45907	-0.00023312	0.14	7.1092E-05	-0.31907	-0.00016202	507.80073703147696	57.944	0.50289	57.711	57.424	57.926	-0.23363	-0.076461	-0.00054343	NaN	22.58	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1092200	+		28469	22025	19631	19671							0.08069431851617992
ISNLLTKLT	9	Unmodified	_ISNLLTKLT_					0	0	0			REV__ENSG00000250298|ENST00000638719|GIMD1	REV__ENSG00000250298|ENST00000638719|GIMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8009948730469	2	501.813325	1001.6121	-0.076413	-3.8345E-05	-0.8105	-0.00040672	-0.88691	-0.00044506	501.8126443305235	46.134	0.61698	46.185	45.998	46.615	0.051395					20	17	2	0	0	0	0.024438	1	4495	4495		44.377	25.017	1	343830	+		28470	29023	19632	19672	32821	32821					0.11135486654154647
ISNLTWLKN	9	Unmodified	_ISNLTWLKN_					0	0	0		ENST00000256031.8_1_3:194182924-194188685:-|nuORF	ENST00000256031.8_1_3:194182924-194188685:-|nuORF	ENST00000256031.8_1_3:194182924-194188685:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.236083984375	2	544.808574	1087.60259	-0.57784	-0.00031481	0.047122	2.5672E-05	-0.53072	-0.00028914	544.8084386831481	58.821	0.54802	58.633	58.431	58.979	-0.18795					30	13	3	0	0	0	0.024337	1	6474	6474		41.427	0	1	556390			28471	11393	19633	19673	32822	32822					0.062297183686723656
ISNPDLVTSL	10	Unmodified	_ISNPDLVTSL_					0	0	0		nc|ENSG00000250312|Q3SXZ3-2|ZNF718;ENSG00000250312|ENST00000510175|ZNF718	nc|ENSG00000250312|Q3SXZ3-2|ZNF718	nc|ENSG00000250312|Q3SXZ3-2|ZNF718	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7890625	2	529.790047	1057.56554	-0.19514	-0.00010338	-0.023659	-1.2534E-05	-0.2188	-0.00011592	529.7900654397287	71.813	1.1778	71.813	71.604	72.782	0					55	29	2	0	0	0	0.69662	1	8730	8730		67.494	0.53175	1	1976200			28472	10847	19634	19674	32823	32823					0.03906002032249489
ISNPKTAEF	9	Unmodified	_ISNPKTAEF_					0	0	0		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7632751464844	2	503.763832	1005.51311	-0.72299	-0.00036422	-0.095538	-4.8129E-05	-0.81853	-0.00041234	503.76375033371335	39.227	0.96983	39.063	38.761	39.731	-0.16458					46	25	3	0	0	0	0.048057	1	3307	3307		129.42	22.414	1	2284600			28473	3520	19635	19675	32824	32824					0.010574636892670242
ISNPKTAEF	9	Unmodified	_ISNPKTAEF_					0	0	0		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.76318359375	2	503.763832	1005.51311	-0.62227	-0.00031348	-0.20594	-0.00010374	-0.82821	-0.00041722	503.7636694960131	39.336	1.318	39.113	38.457	39.775	-0.22311					54	34	3	0	0	0	0.041068	1	3317	3317		132.76	36.567	1	2061400			28474	3520	19635	19675	32825	32825					0.010574636892670242
ISNPKTAEF	9	Unmodified	_ISNPKTAEF_					0	0	0		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.76348876953125	2	503.763832	1005.51311	-0.28943	-0.0001458	-0.50534	-0.00025457	-0.79477	-0.00040037	503.7634241639852	39.332	1.1441	39.106	38.483	39.627	-0.2257					63	30	5	0	0	0	0.03666	1	3306	3306		136.27	40.078	1	1977100			28475	3520	19635	19675	32826	32826					0.010574636892670242
ISNPKTAEF	9	Unmodified	_ISNPKTAEF_					0	0	0		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	503.763832	1005.51311	-0.54468	-0.00027439	-3.8722	-0.0019507	-4.4169	-0.0022251	503.7600266275928	38.865	0.17266	38.865	38.797	38.97	0	-0.172	-0.0035937	NaN	136.27	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52200			28476	3520	19635	19675							0.010574636892670242
ISNPTIKDN	9	Unmodified	_ISNPTIKDN_					0	0	0		ENSG00000160588|ENST00000278949|MPZL3;nc|ENSG00000160588|Q6UWV2-2|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7825622558594	2	501.266739	1000.51892	-1.1654	-0.00058418	-1.4997	-0.00075176	-2.6651	-0.0013359	501.26697668065464	44.219	0.61312	44.074	43.781	44.394	-0.14471					36	17	3	0	0	0	0.024447	1	4225	4225		32.812	0	1	567660			28477	6824	19636	19676	32827	32827					0.01868562200957058
ISNQWKKP	8	Unmodified	_ISNQWKKP_					0	0	0			REV__ENSG00000178919|ENST00000375123|FOXE1	REV__ENSG00000178919|ENST00000375123|FOXE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7918395996094	2	500.782359	999.550165	-0.55657	-0.00027872	3.8998	0.001953	3.3432	0.0016742	500.78424053310835	29.342	0.50547	29.193	28.912	29.418	-0.14952					20	11	2	0	0	0	0.027866	1	1799	1799		55.504	5.4797	1	637270	+		28478	27214	19637	19677	32828	32828					0.05037180025703947
ISNRLVLF	8	Unmodified	_ISNRLVLF_					0	0	0			REV__ENST00000371368.5_1_1:54412201-54413639:+|nuORF	REV__ENST00000371368.5_1_1:54412201-54413639:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.26239013671875	2	481.295102	960.575651	0.47793	0.00023003	-0.74785	-0.00035993	-0.26991	-0.00012991	481.2945107279208	37.443	0.56993	37.443	37.233	37.803	0					30	15	3	0	0	0	0.027866	1	3086	3086		31.955	0	1	362140	+		28479	31157	19638	19678	32829	32829					0.09378654548129362
ISNSPRVI	8	Unmodified	_ISNSPRVI_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.261474609375	2	443.261259	884.507966	-0.99212	-0.00043977	0.9268	0.00041081	-0.065321	-2.8954E-05	443.2615009710026	37.819	0.6731	37.6	37.35	38.023	-0.21971					39	18	3	0	0	0	0.25561	2	3064	3064;3077		131.03	31.656	1	2178100			28480	2451	19639	19679	32830;32831	32830					0.0610920461731439
ISNSPRVI	8	Unmodified	_ISNSPRVI_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.2613525390625	2	443.261259	884.507966	-0.77289	-0.00034259	0.64883	0.0002876	-0.12406	-5.4992E-05	443.2614145346721	37.84	0.70465	37.622	37.344	38.049	-0.21849					43	19	3	0	0	0	0.23402	1	3054	3054		134.81	26.723	1	2338800			28481	2451	19639	19679	32832	32832					0.0610920461731439
ISNTGGKQIN	10	Unmodified	_ISNTGGKQIN_					0	0	0		ENST00000493439.1_1_9:130494756-130497542:-|nuORF;ENST00000496460.5_1_9:130494315-130497584:-|nuORF;ENSG00000160404|ENST00000373284|TOR2A	ENST00000493439.1_1_9:130494756-130497542:-|nuORF	ENST00000493439.1_1_9:130494756-130497542:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2760009765625	2	516.277638	1030.54072	0.11717	6.0491E-05	-4.2695	-0.0022042	-4.1523	-0.0021437	516.2752130258524	88.818	0.80013	88.818	88.555	89.355	0					37	18	3	0	0	0	0.50091	1	11208	11208		88.177	8.7259	1	526950			28482	6813	19640	19680	32833	32833					0.02667366949526695
ISPAVPSQLE	10	Unmodified	_ISPAVPSQLE_					0	0	0		ENST00000398145.6_2_22:26848713-26848923:-|nuORF	ENST00000398145.6_2_22:26848713-26848923:-|nuORF	ENST00000398145.6_2_22:26848713-26848923:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7838134765625	2	520.784764	1039.55498	-0.25442	-0.0001325	-1.0335	-0.00053821	-1.2879	-0.00067071	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	1.1286	1	13262	13262		25.574	0.12388	1	3782600			28483	13618	19641	19681	32834	32834					0.03678019377821329
ISPDAWEFCQ	10	Unmodified	_ISPDAWEFCQ_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3;ENSG00000198799|ENST00000361127|LRIG2	nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MSMS	OPSCC_40_ClassI_Rep-2	5	598.2603149414062	2	598.258056	1194.50156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.865	1	64.663	64.163	65.163	-0.20254								0	0	0	0.5874	1	7393	7393		64.207	2.0999	1				28484	10205;5318	19642	19682	32835	32835					-0.08791101396354861
ISPDMPIEI	9	Unmodified	_ISPDMPIEI_					0	0	0			REV__nc|ENSG00000163531|O94856-2|NFASC	REV__nc|ENSG00000163531|O94856-2|NFASC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7823486328125	2	507.762443	1013.51033	-0.33567	-0.00017044	3.6501	0.0018534	3.3145	0.001683	507.7639075343471	42.037	0.8549	41.905	41.565	42.42	-0.13219					41	24	2	0	0	0	0.024205	1	3892	3892		63.306	7.8021	1	241990	+		28485	25585	19643	19683	32836	32836					0.004118722401244668
ISPIILYF	8	Unmodified	_ISPIILYF_					0	0	0		ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	ENSG00000128699|ENST00000392349|ORMDL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.268310546875	2	483.288954	964.563355	-0.22101	-0.00010681	2.419	0.0011691	2.198	0.0010623	483.2900959222359	46.561	0.22706	46.3	46.123	46.35	-0.26118					6	5	2	0	0	0	0.027866	1	4467	4467		46.766	0	1	94563			28486	4309	19644	19684	32837	32837					0.07965618085097503
ISPIVKAAR	9	Unmodified	_ISPIVKAAR_					0	0	0		ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7431945800781	2	477.808377	953.6022	-0.16702	-7.9803E-05	0.53188	0.00025414	0.36487	0.00017434	477.8083664625771	30.414	0.78636	30.423	30.082	30.868	0.0086689					28	18	2	0	0	0	0.024374	1	1894	1894		25.574	0	1	166750			28487	10977	19645	19685	32838	32838					0.12354343439460536
ISPLFAELK	9	Unmodified	_ISPLFAELK_					0	0	0		ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24	ENSG00000102572|ENST00000539966|STK24	ENSG00000102572|ENST00000539966|STK24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.768798828125	2	509.302593	1016.59063	-0.36981	-0.00018834	-4.0924	-0.0020842	-4.4622	-0.0022726	509.30057715057717	41.969	0.41418	41.837	41.603	42.017	-0.13219					30	11	3	0	0	0	0.02435	1	3814	3814		34.173	12.47	1	674460			28488	2416	19646	19686	32839	32839					0.08300101625457046
ISPLGLGSRGG	11	Unmodified	_ISPLGLGSRGG_					0	0	0		ENST00000371095.7_1_20:57466410-57466719:+|nuORF	ENST00000371095.7_1_20:57466410-57466719:+|nuORF	ENST00000371095.7_1_20:57466410-57466719:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.78167724609375	2	507.290548	1012.56654	0.045495	2.3079E-05	0.6829	0.00034643	0.7284	0.00036951	507.2906955630547	42.11	0.50671	42.11	41.954	42.461	0					23	14	3	0	0	0	0.024771	1	3869	3869		51.193	24.397	1	1489100			28489	12983	19647	19687	32840	32840					0.06076261191822141
ISPLQNGY	8	Unmodified	_ISPLQNGY_					0	0	0		ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	ENSG00000172468|ENST00000307393|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.2320556640625	2	446.232168	890.449782	0.033022	1.4735E-05	-0.72532	-0.00032366	-0.6923	-0.00030893	446.23190028192755	101.14	1.7305	101.14	100.62	102.35	0					118	39	5	0	0	0	1.0338	2	12926	12926;12985		31.955	1.4512	1	6954500			28490	7995	19648	19688	32841;32842	32841					0.00017522972052574914
ISPLQNGY	8	Unmodified	_ISPLQNGY_					0	0	0		ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	ENSG00000172468|ENST00000307393|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2319030761719	2	446.232168	890.449782	0.088406	3.945E-05	-0.63717	-0.00028433	-0.54876	-0.00024488	446.23196670301775	101.18	2.1749	101.19	100.06	102.24	0.0090256					122	51	5	0	0	0	1.0338	1	12888	12888		31.955	1.4512	1	6913800			28491	7995	19648	19688	32843	32843					0.00017522972052574914
ISPLQNGY	8	Unmodified	_ISPLQNGY_					0	0	0		ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	ENSG00000172468|ENST00000307393|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	446.2318115234375	2	446.232168	890.449782	0.46896	0.00020926	-1.2353	-0.00055122	-0.76633	-0.00034196	446.23162918375465	101.61	1.585	101.48	100.95	102.53	-0.13156					112	36	5	0	0	0	0.99042	1	12603	12603		38.806	0	1	5166600			28492	7995	19648	19688	32844	32844					0.00017522972052574914
ISPLQNGY	8	Unmodified	_ISPLQNGY_					0	0	0		ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	ENSG00000172468|ENST00000307393|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	446.23187255859375	2	446.232168	890.449782	0.22578	0.00010075	-1.2036	-0.00053707	-0.9778	-0.00043632	446.23159610244517	101.7	1.5633	101.57	100.98	102.54	-0.12576					112	37	5	0	0	0	1.0239	2	12611	12611;12634		33.516	1.5607	1	4963200			28493	7995	19648	19688	32845;32846	32845					0.00017522972052574914
ISPLQNGY	8	Unmodified	_ISPLQNGY_					0	0	0		ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	ENSG00000172468|ENST00000307393|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	446.2317199707031	2	446.232168	890.449782	0.30845	0.00013764	-1.3943	-0.00062219	-1.0859	-0.00048455	446.23152023452957	101.79	1.2282	101.62	101.15	102.37	-0.17178					92	28	5	0	0	0	0.99042	1	12634	12634		38.806	0	1	4822100			28494	7995	19648	19688	32847	32847					0.00017522972052574914
ISPLRSLIV	9	Unmodified	_ISPLRSLIV_					0	0	0		ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.3237609863281	2	499.32386	996.633166	1.3587	0.00067843	-1.7525	-0.00087507	-0.39382	-0.00019664	499.3229836235811	63.717	1.9239	63.717	63.336	65.26	0					135	52	4	0	0	0	0.29158	1	7476	7476		76.774	2.5191	1	34948000			28495	9980	19649	19689	32848	32848					0.1347149675370929
ISPLRSLIV	9	Unmodified	_ISPLRSLIV_					0	0	0		ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.3239440917969	2	499.32386	996.633166	0.030222	1.509E-05	-0.60524	-0.00030221	-0.57502	-0.00028712	499.3235630930788	63.963	1.8449	63.712	63.372	65.217	-0.25141					120	49	4	0	0	0	0.2508	1	7494	7494		82.241	2.7895	1	34182000			28496	9980	19649	19689	32849	32849					0.1347149675370929
ISPLRSLIV	9	Unmodified	_ISPLRSLIV_					0	0	0		ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.32379150390625	2	499.32386	996.633166	1.7703	0.00088394	-2.3345	-0.0011657	-0.56427	-0.00028175	499.3226952178435	63.697	1.7933	63.751	63.41	65.203	0.054104					115	48	4	0	0	0	0.16468	1	7397	7397		96.19	8.4361	1	32941000			28497	9980	19649	19689	32850	32850					0.1347149675370929
ISPMMLVRDQR	11	Unmodified	_ISPMMLVRDQR_					0	0	0			REV__ENST00000311936.7_1_12:25362817-25378573:-|nuORF	REV__ENST00000311936.7_1_12:25362817-25378573:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.8661193847656	3	449.240813	1344.70061	-0.35235	-0.00015829	3.1125	0.0013983	2.7602	0.00124	449.2421016053913	48.101	0.58321	48.003	47.743	48.326	-0.097553					31	15	3	0	0	0	0.024738	1	4718	4718		44.639	10.553	1	272190	+		28498	30215	19650	19690	32851	32851					0.04204835630685011
ISPPVHLPR	9	Unmodified	_ISPPVHLPR_					0	0	0		nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2	nc|ENSG00000118257|O60462-4|NRP2	nc|ENSG00000118257|O60462-4|NRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2801208496094	2	508.306001	1014.59745	-0.68353	-0.00034744	0.97708	0.00049665	0.29354	0.00014921	508.30665829591464	48.353	0.16971	48.2	48.125	48.295	-0.15301					5	4	2	0	0	0	0.024523	1	4898	4898		15.642	0	1	103040			28499	3674	19651	19691	32852	32852					0.09073459296689634
ISPWISVVK	9	Unmodified	_ISPWISVVK_					0	0	0		ENST00000556431.1_1_14:105222603-105223098:+|nuORF	ENST00000556431.1_1_14:105222603-105223098:+|nuORF	ENST00000556431.1_1_14:105222603-105223098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8041381835938	2	514.810585	1027.60662	0.082349	4.2394E-05	2.7399	0.0014105	2.8222	0.0014529	515.3132914575449	58.323	0.62328	58.323	58.091	58.714	0					34	16	4	0	0	0	0.024263	1	6579	6579		42.396	0	1	2165800			28500	16710	19652	19692	32853	32853					0.09391807862357382
ISPWNLPL	8	Unmodified	_ISPWNLPL_					0	0	0		ENST00000349305.8_1_6:135239555-135263608:-|nuORF;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	ENST00000349305.8_1_6:135239555-135263608:-|nuORF	ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2668151855469	2	470.268553	938.522553	-0.57485	-0.00027033	-3.9239	-0.0018453	-4.4987	-0.0021156	470.26662877874793	29.744	1.1735	29.571	29.242	30.416	-0.17258					62	27	4	0	0	0	0.24207	1	1828	1828		133.47	4.608	1	3173800			28501	3689	19653	19693	32854	32854					0.050832767654810596
ISQAQRATL	9	Unmodified	_ISQAQRATL_					0	0	0		ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.2815246582031	2	494.282723	986.550893	-0.11931	-5.8974E-05	-0.042169	-2.0843E-05	-0.16148	-7.9817E-05	494.28259122791286	24.93	0.60989	24.755	24.425	25.035	-0.17484					26	13	3	0	0	0	0.32811	1	1129	1129		71.877	0.58177	1	658990			28502	12670	19654	19694	32855	32855					0.057079746747604077
ISQAQRATL	9	Unmodified	_ISQAQRATL_					0	0	0		ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2828063964844	2	494.282723	986.550893	1.2428	0.00061427	-1.4379	-0.00071073	-0.19514	-9.6456E-05	494.2818635133095	25.017	0.60288	24.845	24.556	25.159	-0.17151					27	13	3	0	0	0	0.247	1	1119	1119		82.75	10.873	1	613640			28503	12670	19654	19694	32856	32856					0.057079746747604077
ISQCVAPPAI	10	Unmodified	_ISQCVAPPAI_					0	0	0			REV__nc|ENSG00000166311|P17405-4|SMPD1	REV__nc|ENSG00000166311|P17405-4|SMPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7158508300781	2	499.770603	997.526652	0.23516	0.00011752	-3.3712	-0.0016848	-3.136	-0.0015673	499.7687441449961	70.865	0.39262	70.65	70.563	70.956	-0.21425					11	8	2	0	0	0	0.03519	1	8292	8292		27.882	0	1	93984	+		28504	36886	19655	19695	32857	32857					0.027789981968680877
ISQFLFTPD	9	Unmodified	_ISQFLFTPD_					0	0	0			REV__ENSG00000197408|ENST00000324071|CYP2B6	REV__ENSG00000197408|ENST00000324071|CYP2B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2715454101562	2	534.274032	1066.53351	0.63428	0.00033888	-4.3052	-0.0023001	-3.6709	-0.0019613	534.2716004006553	59.504	0.9988	59.504	59.257	60.256	0					66	26	4	0	0	0	0.2508	1	6827	6827		82.241	10.363	1	4904100	+		28505	28300	19656	19696	32858	32858					0.0029063434908493946
ISQGRQAR	8	Unmodified	_ISQGRQAR_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.279296875	2	458.259582	914.504612	-0.92452	-0.00042367	4.1109	0.0018838	3.1863	0.0014602	458.26106007733426	44.195	0.31522	43.976	43.826	44.142	-0.21939					11	8	2	0	0	0	0.027866	1	4072	4072		25.45	0	1	93447	+		28506	28013	19657	19697	32859	32859					0.04393954563317948
ISQITYACS	9	Unmodified	_ISQITYACS_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7975769042969	2	493.236593	984.458632	-0.47777	-0.00023565	-1.7112	-0.00084404	-2.189	-0.0010797	493.2355982778185	61.007	0.29615	61.078	60.871	61.167	0.071125					10	7	2	0	0	0	0.024477	1	6960	6960		14.865	0	1	108730	+		28507	20017	19658	19698	32860	32860					-0.03421871453792846
ISQIYPNFY	9	Unmodified	_ISQIYPNFY_					0	0	0			REV__TPH2|p.T451I|1|0.16|ENSG00000139287|chr12:72031574-72031574|C/T|missense_variant	REV__TPH2|p.T451I|1|0.16|ENSG00000139287|chr12:72031574-72031574|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.786376953125	2	572.787307	1143.56006	0.039813	2.2804E-05	-3.7325	-0.0021379	-3.6927	-0.0021151	572.7850078359043	34.14	0.82007	33.916	33.6	34.42	-0.22412					61	20	4	0	0	0	0.70156	1	2471	2471		45.972	4.5456	1	2127200	+		28508	37723	19659	19699	32861	32861					-0.005976767595711863
ISQLIAGY	8	Unmodified	_ISQLIAGY_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.2071228027344	2	432.744911	863.475269	-0.48432	-0.00020959	0.35122	0.00015199	-0.1331	-5.7599E-05	432.7448488539088	43.599	0.4955	43.38	43.176	43.672	-0.21939					20	13	2	0	0	0	0.027866	1	4009	4009		31.955	4.0726	1	402280			28509	8217	19660	19700	32862	32862					0.03806997494461939
ISQLIAGY	8	Unmodified	_ISQLIAGY_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	432.744911	863.475269	-0.054928	-2.377E-05	0.38479	0.00016652	0.32986	0.00014275	432.7447425791523	43.451	0.73537	43.338	42.997	43.733	-0.11253	-0.030462	-3.1055E-05	NaN	31.955	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364310			28510	8217	19660	19700							0.03806997494461939
ISQLIAGY	8	Unmodified	_ISQLIAGY_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	432.744911	863.475269	-0.49741	-0.00021525	0.51838	0.00022433	0.020974	9.0764E-06	432.7448981889151	43.626	0.57787	43.388	43.061	43.639	-0.23736	0.019376	8.4566E-05	NaN	31.955	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358360			28511	8217	19660	19700							0.03806997494461939
ISQLIRQLN	9	Unmodified	_ISQLIRQLN_					0	0	0		ENST00000590816.1_1_17:42442384-42442459:-|nuORF	ENST00000590816.1_1_17:42442384-42442459:-|nuORF	ENST00000590816.1_1_17:42442384-42442459:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2654418945312	2	542.827298	1083.64004	-1.245	-0.00067584	0.76516	0.00041535	-0.47988	-0.00026049	542.8277026118601	53.277	1.4284	53.373	53.127	54.556	0.095669					76	40	4	0	0	0	0.024523	1	5724	5724		29.15	0	1	2112900			28512	17339	19661	19701	32863	32863					0.10156809634281672
ISQLIRQLN	9	Unmodified	_ISQLIRQLN_					0	0	0		ENST00000590816.1_1_17:42442384-42442459:-|nuORF	ENST00000590816.1_1_17:42442384-42442459:-|nuORF	ENST00000590816.1_1_17:42442384-42442459:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.827298	1083.64004	-0.32499	-0.00017642	-2.842	-0.0015427	-3.167	-0.0017191	543.3256611152297	53.612	0.2533	53.367	53.237	53.49	-0.2453	-0.043657	-0.0037408	NaN	29.15	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96101			28513	17339	19661	19701							0.10156809634281672
ISQNGCVNVVN	11	Unmodified	_ISQNGCVNVVN_					0	0	0			REV__RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	REV__RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.782470703125	2	573.78223	1145.54991	-0.19469	-0.00011171	0.54146	0.00031068	0.34677	0.00019897	573.782528465205	64.351	3.893	64.123	62.569	66.462	-0.22773					221	97	4	0	0	0	0.849	1	7367	7367		54.722	4.6978	1	5968600	+		28514	26363	19662	19702	32864	32864					-0.017046077564600637
ISQPASGNTF	10	Unmodified	_ISQPASGNTF_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2503967285156	2	511.251089	1020.48762	-0.054484	-2.7855E-05	-0.33947	-0.00017355	-0.39395	-0.00020141	511.25084577755933	46.972	0.6671	46.876	46.572	47.239	-0.096653					44	17	4	0	0	0	0.29487	2	4555	4555;4567		109.48	36.52	1	3633100			28515	5667	19663	19703	32865;32866	32865					-0.021800108331376578
ISQPASGNTF	10	Unmodified	_ISQPASGNTF_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2507629394531	2	511.251089	1020.48762	0.010466	5.3506E-06	-0.38644	-0.00019757	-0.37598	-0.00019222	511.25081491320145	47.191	0.87206	46.922	46.662	47.534	-0.26939					57	23	4	0	0	0	0.090646	3	4579	4579;4589;4602		138.06	55.822	1	3775300			28516	5667	19663	19703	32867;32868;32869	32867					-0.021800108331376578
ISQPASGNTF	10	Unmodified	_ISQPASGNTF_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.251220703125	2	511.251089	1020.48762	-0.35101	-0.00017945	-0.059909	-3.0629E-05	-0.41092	-0.00021008	511.2509440122546	47.039	0.73403	46.845	46.577	47.311	-0.19387					51	19	4	0	0	0	0.20166	2	4567	4567;4578		120.87	38.628	1	3471300			28517	5667	19663	19703	32870;32871	32870					-0.021800108331376578
ISQRHGKTN	9	Unmodified	_ISQRHGKTN_					0	0	0		ENST00000393766.6_1_4:166248857-166259022:+|nuORF	ENST00000393766.6_1_4:166248857-166259022:+|nuORF	ENST00000393766.6_1_4:166248857-166259022:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7847290039062	2	520.783422	1039.55229	-0.95638	-0.00049807	2.3674	0.0012329	1.4111	0.00073486	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	0.75397	1	13287	13287		42.396	1.618	1	3485700			28518	13462	19664	19704	32872	32872					0.03409608763536198
ISQRLPPKV	9	Unmodified	_ISQRLPPKV_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7325439453125	2	519.326934	1036.63931	-0.62408	-0.0003241	0.81836	0.00042499	0.19428	0.00010089	519.3271059540541	57.22	0.52879	57.22	57.003	57.532	0					20	13	2	0	0	0	0.024418	1	6400	6400		30.318	0	1	307930			28519	5130	19665	19705	32873	32873					0.12246014985225884
ISQVDANAIL	10	Unmodified	_ISQVDANAIL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.291259765625	2	522.290214	1042.56587	-0.19336	-0.00010099	0.85479	0.00044645	0.66144	0.00034546	522.290012293837	57.089	0.97835	56.925	56.641	57.619	-0.16431					49	26	2	0	0	0	0.50517	1	6352	6352		87.696	14.817	1	13003000	+		28520	36722	19666	19706	32874	32874					0.04629421752088092
ISQVDANAIL	10	Unmodified	_ISQVDANAIL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2896118164062	2	522.290214	1042.56587	-0.32947	-0.00017208	1.4296	0.00074666	1.1001	0.00057458	522.2901675062254	56.802	1.0341	56.9	56.51	57.544	0.097603					68	28	4	0	0	0	0.59716	1	6268	6268		77.318	8.4714	1	14080000	+		28521	36722	19666	19706	32875	32875					0.04629421752088092
ISQVKHLMRLV	11	Unmodified	_ISQVKHLMRLV_					0	0	0			REV__HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|17|3|sense	REV__HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|17|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.61834716796875	3	441.93583	1322.78566	1.2309	0.00054398	2.9106	0.0012863	4.1415	0.0018303	441.93712138899633	17.039	0.90182	16.885	16.655	17.557	-0.15403					37	17	3	0	0	0	0.024809	1	136	136		12.433	0	1	121110	+		28522	36110	19667	19707	32876	32876					0.1371794915880855
ISQVPRRL	8	Unmodified	_ISQVPRRL_					0	0	0		nc|ENSG00000130159|Q9BQ95-4|ECSIT;nc|ENSG00000130159|Q9BQ95-2|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-4|ECSIT	nc|ENSG00000130159|Q9BQ95-4|ECSIT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.25164794921875	2	484.803626	967.592698	-0.48552	-0.00023538	0.51625	0.00025028	0.030725	1.4896E-05	484.80386719767915	21.547	1.1067	21.457	20.961	22.067	-0.090092					29	22	2	0	0	0	0.027866	1	722	722		87.754	2.8388	1	153430			28523	4389	19668	19708	32877	32877					0.10760575153938134
ISRADVII	8	Unmodified	_ISRADVII_					0	0	0		ENST00000555527.1_1_14:67579771-67631908:+|nuORF;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.77215576171875	2	443.77146	885.528367	-0.038655	-1.7154E-05	-0.016811	-7.4603E-06	-0.055466	-2.4614E-05	443.7713003046506	52.118	0.79179	52.118	51.803	52.595	0					54	20	4	0	0	0	0.6536	1	5579	5579		71.296	0	1	1883900			28524	8187	19669	19709	32878	32878					0.08102375277132978
ISRADVII	8	Unmodified	_ISRADVII_					0	0	0		ENST00000555527.1_1_14:67579771-67631908:+|nuORF;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.77146	885.528367	0.20295	9.0064E-05	-0.11683	-5.1846E-05	0.086121	3.8218E-05	443.77123680125646	52.224	0.59561	52.076	51.811	52.406	-0.14735	0.0012224	-0.00015686	NaN	71.296	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2033900			28525	8187	19669	19709							0.08102375277132978
ISRADVII	8	Unmodified	_ISRADVII_					0	0	0		ENST00000555527.1_1_14:67579771-67631908:+|nuORF;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.77146	885.528367	-0.59881	-0.00026573	0.52462	0.00023281	-0.074183	-3.292E-05	443.77145086405926	51.939	0.92161	52.031	51.788	52.71	0.091938	-0.043872	0.00041246	NaN	71.296	49	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1184000			28526	8187	19669	19709							0.08102375277132978
ISRAQLVPL	9	Unmodified	_ISRAQLVPL_					0	0	0		ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	ENSG00000145192|ENST00000411641|AHSG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7667236328125	2	498.813659	995.612765	-0.39563	-0.00019735	-1.0994	-0.0005484	-1.495	-0.00074574	498.8132120461738	41.855	0.71486	41.623	41.155	41.87	-0.23186					27	18	3	0	0	0	0.024447	1	3717	3717		40.778	11.629	1	194230			28527	5795	19670	19710	32879	32879					0.114783260938907
ISRATIID	8	Unmodified	_ISRATIID_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11;nc|ENSG00000163517|Q96DB2-2|HDAC11;ENST00000487585.5_1_3:13543373-13544524:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.76116943359375	2	444.761092	887.507631	0.012584	5.5969E-06	-0.28381	-0.00012623	-0.27123	-0.00012063	444.7609804139507	24.103	0.95199	23.887	23.554	24.506	-0.2151					56	21	4	0	0	0	0.39824	1	1030	1030		97.473	3.4663	1	5935600			28528	7094	19671	19711	32880	32880					0.059377848974691005
ISREQAIAL	9	Unmodified	_ISREQAIAL_					0	0	0		ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-1|TNS1	ENSG00000079308|ENST00000682258|TNS1	ENSG00000079308|ENST00000682258|TNS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7459411621094	2	500.792924	999.571294	-0.35429	-0.00017743	-0.14601	-7.3121E-05	-0.5003	-0.00025055	500.7927315372959	53.179	0.73311	52.989	52.831	53.564	-0.18982					27	19	2	0	0	0	0.024021	1	5535	5535		58.782	9.3404	1	2653300			28529	1657	19672	19712	32881	32881					0.07149145334540208
ISRIIPGGVA	10	Unmodified	_ISRIIPGGVA_					0	0	0		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7691650390625	2	491.805834	981.597115	0.37281	0.00018335	-1.1788	-0.00057974	-0.80598	-0.00039639	491.80532552763106	42.013	0.42958	42.013	41.758	42.187	0					21	12	2	0	0	0	0.03519	1	3860	3860		29.15	0	1	102770			28530	3083	19673	19713	32882	32882					0.10558039576847023
ISRLALISQ	9	Unmodified	_ISRLALISQ_					0	0	0			REV__CUX1|p.N619S|1|0.25|ENSG00000257923|chr7:102197267-102197267|A/G|missense_variant	REV__CUX1|p.N619S|1|0.25|ENSG00000257923|chr7:102197267-102197267|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.74578857421875	2	500.811116	999.60768	-0.16542	-8.2844E-05	-0.61293	-0.00030696	-0.77834	-0.0003898	500.81076837561596	41.384	0.41756	41.249	41.06	41.478	-0.13553					17	10	2	0	0	0	0.0245	1	3626	3626		29.17	0	1	152210	+		28531	19634	19674	19714	32883	32883					0.10786022231286552
ISRLALISQ	9	Unmodified	_ISRLALISQ_					0	0	0			REV__CUX1|p.N619S|1|0.25|ENSG00000257923|chr7:102197267-102197267|A/G|missense_variant	REV__CUX1|p.N619S|1|0.25|ENSG00000257923|chr7:102197267-102197267|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7463073730469	2	500.811116	999.60768	-0.65774	-0.00032941	-0.52898	-0.00026492	-1.1867	-0.00059433	500.81055689479797	41.67	0.38378	41.44	41.196	41.58	-0.23029					15	9	2	0	0	0	0.024447	1	3648	3648		32.812	4.9302	1	123780	+		28532	19634	19674	19714	32884	32884					0.10786022231286552
ISRLMIML	8	2 Oxidation (M)	_ISRLM(Oxidation (M))IM(Oxidation (M))L_		ISRLM(1)IM(1)L		ISRLM(85)IM(85)L	0	0	2			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7843322753906	2	504.782656	1007.55076	-0.081644	-4.1212E-05	2.6487	0.001337	2.5671	0.0012958	504.7839530636181	98.088	1.3622	98.088	97.683	99.045	0					65	31	3	0	0	0	0.50239	1	12546	12546		85.359	8.5128	1	1114600	+		28533	26099	19675	19715	32885	32885		775;776			0.04728515358874574
ISRLMIML	8	2 Oxidation (M)	_ISRLM(Oxidation (M))IM(Oxidation (M))L_		ISRLM(1)IM(1)L		ISRLM(110)IM(110)L	0	0	2			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7846374511719	2	504.782656	1007.55076	0.22484	0.0001135	2.482	0.0012528	2.7068	0.0013663	504.7838027361839	98.018	1.1845	98.028	97.684	98.869	0.010231					63	27	3	0	0	0	0.30053	2	12484	12484;12509		111.65	28.361	1	1045200	+		28534	26099	19675	19715	32886;32887	32886		775;776			0.04728515358874574
ISRNPYCGY	9	Unmodified	_ISRNPYCGY_					0	0	0		ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3422241210938	2	536.747659	1071.48076	-0.48309	-0.0002593	-3.8148	-0.0020476	-4.2979	-0.0023069	536.7459699051399	50.224	0.86018	50.305	49.884	50.744	0.080994					65	25	5	0	0	0	0.024292	1	5208	5208		49.442	0	1	550420			28535	5770	19676	19716	32888	32888					-0.05211646985367224
ISRPKYTDI	9	Unmodified	_ISRPKYTDI_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8;nc|ENSG00000101353|Q9H579|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2900390625	2	546.806031	1091.59751	0.19412	0.00010615	3.5757	0.0019552	3.7698	0.0020614	547.3095892377438	97.329	0.84476	97.329	96.881	97.726	-3.0518E-05					36	18	3	0	0	0	0.023837	1	12371	12371		84.916	10.66	1	127650			28536	2315	19677	19717	32889	32889					0.05537414506034111
ISRPWLTIDS	10	Unmodified	_ISRPWLTIDS_					0	0	0		NUP155|p.A115P|1|0.04|ENSG00000113569|chr5:37363937-37363937|C/G|missense_variant	NUP155|p.A115P|1|0.04|ENSG00000113569|chr5:37363937-37363937|C/G|missense_variant	NUP155|p.A115P|1|0.04|ENSG00000113569|chr5:37363937-37363937|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	594.7442016601562	2	594.324588	1186.63462	-0.9284	-0.00055177	-3.187	-0.0018941	-4.1154	-0.0024459	594.3232509008462	30.574	0.41636	30.33	30.122	30.538	-0.24415					16	9	2	0	0	0	0.03519	1	1958	1958		17.468	0.99486	1	40469			28537	18897	19678	19718	32890	32890					0.04877086051783408
ISRQTKPN	8	Unmodified	_ISRQTKPN_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.2979736328125	2	472.269616	942.524678	-0.64562	-0.00030491	1.3854	0.0006543	0.73981	0.00034939	472.270112193839	32.904	0.48214	32.739	32.476	32.958	-0.16565					20	11	3	0	0	0	0.027866	1	2280	2280		25.45	0	1	203040	+		28538	24334	19679	19719	32891	32891					0.051117055032818826
ISRRKKPSSTL	11	Unmodified	_ISRRKKPSSTL_					0	0	0			REV__ENST00000471323.1_1_19:36503918-36503972:-|nuORF	REV__ENST00000471323.1_1_19:36503918-36503972:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.8901672363281	3	424.929733	1271.76737	-0.99472	-0.00042269	-2.0254	-0.00086064	-3.0201	-0.0012833	424.92904295464047	20.152	0.24562	20.152	20.028	20.274	0					6	4	2	0	0	0	0.024743	1	516	516		23.378	4.1152	1	11386	+		28539	31419	19680	19720	32892	32892					0.14235530508472038
ISRSLILK	8	Unmodified	_ISRSLILK_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2866516113281	2	465.310752	928.606951	-0.12622	-5.8731E-05	-1.9016	-0.00088483	-2.0278	-0.00094356	465.3103572670053	75.56	0.6429	75.287	75.018	75.661	-0.27266					30	15	3	0	0	0	0.027866	1	8941	8941		90.37	2.6155	1	400070	+		28540	28501	19681	19721	32893	32893					0.1397922758222876
ISRSTNSNF	9	Unmodified	_ISRSTNSNF_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.2540283203125	2	513.254163	1024.49377	-1.065	-0.00054663	0.7773	0.00039895	-0.28771	-0.00014767	513.2544746776089	29.322	1.1171	29.077	28.578	29.695	-0.24524					58	25	4	0	0	0	0.12933	2	1786	1777;1786		104.01	13.237	1	2661500			28541	6314	19682	19722	32894;32895	32895					-0.01749492601629754
ISRSTNSNF	9	Unmodified	_ISRSTNSNF_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2539672851562	2	513.254163	1024.49377	-0.53561	-0.0002749	0.21018	0.00010788	-0.32543	-0.00016703	513.2542033824047	29.206	0.93709	29.033	28.766	29.703	-0.17258					59	21	5	0	0	0	0.12933	2	1775	1761;1775		104.01	21.72	1	2880300			28542	6314	19682	19722	32896;32897	32897					-0.01749492601629754
ISRSTNSNF	9	Unmodified	_ISRSTNSNF_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2538452148438	2	513.254163	1024.49377	-0.34304	-0.00017607	-0.17225	-8.841E-05	-0.5153	-0.00026448	513.254016297772	29.127	0.8012	28.978	28.7	29.501	-0.14952					58	18	5	0	0	0	0.1764	2	1727	1727;1737		93.598	11.403	1	2908900			28543	6314	19682	19722	32898;32899	32898					-0.01749492601629754
ISRTAVVM	8	Oxidation (M)	_ISRTAVVM(Oxidation (M))_		ISRTAVVM(1)		ISRTAVVM(100)	0	0	1		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	446.7497863769531	2	446.74967	891.484787	-0.30786	-0.00013754	0.085057	3.7999E-05	-0.2228	-9.9538E-05	446.7496287385383	31.136	1.1978	30.895	30.367	31.565	-0.24109					75	29	5	0	0	0	0.34573	3	2058	2033;2045;2058		104.75	26.724	1	4649200			28544	3459	19683	19723	32900;32901;32902	32902		134			0.03470442508364613
ISRTAVVM	8	Oxidation (M)	_ISRTAVVM(Oxidation (M))_		ISRTAVVM(1)		ISRTAVVM(88)	0	0	1		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	446.7499694824219	2	446.74967	891.484787	-0.079198	-3.5382E-05	0.068595	3.0645E-05	-0.010603	-4.7369E-06	446.7495718304918	33.519	3.9803	33.287	31.575	35.556	-0.23107					185	98	3	0	0	0	0.47665	4	2406	2383;2406;2419;2461		87.754	16.459	1	1689200			28545	3459	19683	19723	32903;32904;32905;32906	32904		134			0.03470442508364613
ISRTAVVM	8	Oxidation (M)	_ISRTAVVM(Oxidation (M))_		ISRTAVVM(1)		ISRTAVVM(99)	0	0	1		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	446.7496643066406	2	446.74967	891.484787	-0.4636	-0.00020711	0.34668	0.00015488	-0.11691	-5.223E-05	446.74975595205564	31.074	0.82133	30.889	30.618	31.44	-0.18503					60	20	4	0	0	0	0.38989	3	2032	2021;2032;2047		98.629	34.422	1	4642000			28546	3459	19683	19723	32907;32908;32909	32908		134			0.03470442508364613
ISRTAVVM	8	Oxidation (M)	_ISRTAVVM(Oxidation (M))_		ISRTAVVM(1)		ISRTAVVM(93)	0	0	1		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	446.7497253417969	2	446.74967	891.484787	-0.26494	-0.00011836	0.2667	0.00011915	0.001761	7.8672E-07	446.7496550833323	33.525	4.2056	33.325	31.424	35.63	-0.20019					202	104	3	0	0	0	0.42912	1	2399	2399		93.195	21.9	1	1486200			28547	3459	19683	19723	32910	32910		134			0.03470442508364613
ISRTAVVM	8	Oxidation (M)	_ISRTAVVM(Oxidation (M))_		ISRTAVVM(1)		ISRTAVVM(88)	0	0	1		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	446.7497863769531	2	446.74967	891.484787	-0.14191	-6.34E-05	-0.034491	-1.5409E-05	-0.17641	-7.8809E-05	446.7495612200134	31.104	1.1033	30.951	30.553	31.657	-0.15231					66	27	4	0	0	0	0.47727	3	2019	2008;2019;2031		87.696	23.489	1	4509500			28548	3459	19683	19723	32911;32912;32913	32912		134			0.03470442508364613
ISRTAVVM	8	Oxidation (M)	_ISRTAVVM(Oxidation (M))_		ISRTAVVM(1)		ISRTAVVM(93)	0	0	1		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	446.7495422363281	2	446.74967	891.484787	-0.82209	-0.00036727	0.75798	0.00033863	-0.06411	-2.8641E-05	446.7498711133416	33.422	3.8293	33.257	31.643	35.473	-0.16565					193	95	4	0	0	0	0.42912	2	2381	2369;2381		93.195	21.269	1	1834400			28549	3459	19683	19723	32914;32915	32915		134			0.03470442508364613
ISRTAVVM	8	Oxidation (M)	_ISRTAVVM(Oxidation (M))_					0	0	1		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	446.74967	891.484787	-0.86947	-0.00038844	-6.8035	-0.0030395	-7.673	-0.0034279	446.7451740149033	30.956	0.12403	30.956	30.879	31.003	0	0.032932	-0.0055178	NaN	104.75	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17703			28550	3459	19683	19723				134			0.03470442508364613
ISRTAVVM	8	Unmodified	_ISRTAVVM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.7523498535156	2	438.752213	875.489873	-0.54406	-0.00023871	0.53947	0.00023669	-0.0045953	-2.0162E-06	438.75237986089786	39.952	0.81815	39.802	39.513	40.331	-0.1497					54	21	4	0	0	0	0.56311	1	3418	3418		79.713	5.7379	1	6727900			28551	3459	19683	19724	32916	32916					0.04714746370973444
ISRTAVVM	8	Unmodified	_ISRTAVVM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.7521057128906	2	438.752213	875.489873	-0.22857	-0.00010029	0.1517	6.6557E-05	-0.076879	-3.3731E-05	438.75223919768086	40.134	0.78597	39.909	39.62	40.406	-0.225					50	20	4	0	0	0	0.44952	2	3442	3442;3455		90.37	21.583	1	7328900			28552	3459	19683	19724	32917;32918	32917					0.04714746370973444
ISRTAVVM	8	Unmodified	_ISRTAVVM_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.7524108886719	2	438.752213	875.489873	-0.17309	-7.5944E-05	0.094466	4.1447E-05	-0.078626	-3.4497E-05	438.7521894051986	40.102	0.82927	39.872	39.585	40.414	-0.23021					54	21	4	0	0	0	0.56311	1	3430	3430		79.713	5.7379	1	6191300			28553	3459	19683	19724	32919	32919					0.04714746370973444
ISRVEFTFP	9	Unmodified	_ISRVEFTFP_					0	0	0		ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7158203125	2	548.295299	1094.57605	-0.96007	-0.0005264	3.4874	0.0019121	2.5274	0.0013857	548.2966197650883	44.02	0.35185	43.916	43.817	44.168	-0.10468					12	9	2	0	0	0	0.024436	1	4103	4103		47.916	17.412	1	82097			28554	1854	19684	19725	32920	32920					0.032540294773070855
ISRVLHTLE	9	Unmodified	_ISRVLHTLE_					0	0	0		nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2969360351562	2	534.314023	1066.61349	0.22206	0.00011865	4.4407	0.0023727	4.6627	0.0024914	534.8179908118742	80.067	0.29402	79.821	79.571	79.865	-0.2465					11	6	2	0	0	0	0.024427	1	9553	9553		42.396	20.436	1	63412			28555	5780	19685	19726	32921	32921					0.08285120742948493
ISRVSTPLAG	10	Unmodified	_ISRVSTPLAG_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7928466796875	2	500.792924	999.571294	-2.1727	-0.0010881	1.3672	0.00068466	-0.80553	-0.00040341	500.7936378130004	52.12	0.76794	51.851	51.548	52.316	-0.26903					50	20	3	0	0	0	0.40114	1	5404	5404		98.582	1.1093	1	11260000	+		28556	28443	19686	19727	32922	32922					0.07149145334562945
ISRVSTPLAG	10	Unmodified	_ISRVSTPLAG_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	500.792924	999.571294	-2.1727	-0.0010881	1.3672	0.00068466	-0.80553	-0.00040341	500.7936378130004	52.12	0.76794	51.851	51.548	52.316	-0.26903	0.061037	0.00090904	NaN	98.582	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11260000	+		28557	28443	19686	19727							0.07149145334562945
ISRYQFSFLTL	11	Unmodified	_ISRYQFSFLTL_					0	0	0		ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2665100097656	3	458.918722	1373.73434	-0.37114	-0.00017032	-3.2933	-0.0015113	-3.6644	-0.0016817	458.9173259042665	28.294	0.51883	28.142	27.922	28.441	-0.15195					29	12	3	0	0	0	0.024801	1	1656	1656		8.7993	0	1	301200			28558	9158	19687	19728	32923	32923					0.06241903665750215
ISSDRLMQN	9	Unmodified	_ISSDRLMQN_					0	0	0			REV__ENST00000427383.6_2_11:125499144-125499310:+|nuORF	REV__ENST00000427383.6_2_11:125499144-125499310:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.84228515625	2	532.263673	1062.51279	-0.27981	-0.00014893	-1.0561	-0.00056214	-1.3359	-0.00071107	532.2629585037597	51.338	0.60292	51.338	51.03	51.633	0					28	16	2	0	0	0	0.024292	1	5414	5414		40.778	6.6056	1	283780	+		28559	32293	19688	19729	32924	32924					-0.015962793022254118
ISSGFLLQSQ	10	Unmodified	_ISSGFLLQSQ_					0	0	0		ENSG00000162598|ENST00000371201|C1orf87	ENSG00000162598|ENST00000371201|C1orf87	ENSG00000162598|ENST00000371201|C1orf87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3084716796875	2	540.290214	1078.56587	-0.01113	-6.0134E-06	0.16311	8.8129E-05	0.15198	8.2116E-05	540.2903407353864	72.328	0.43507	72.338	72.094	72.529	0.0097733					19	10	3	0	0	0	0.03519	1	8734	8734		37.812	13.609	1	201320			28560	6958	19689	19730	32925	32925					0.029734217520854145
ISSGFPHVV	9	Unmodified	_ISSGFPHVV_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2924499511719	2	471.75581	941.497067	0.14387	6.7873E-05	0.68508	0.00032319	0.82895	0.00039106	471.7557914401308	52.981	0.55933	52.981	52.673	53.232	0					20	14	2	0	0	0	0.024262	1	5681	5681		47.916	3.3845	1	141740	+		28561	24649	19690	19731	32926	32926					0.02397802243035585
ISSGVVSIW	9	Unmodified	_ISSGVVSIW_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.263916015625	2	474.263468	946.512382	0.060428	2.8659E-05	0.2539	0.00012041	0.31433	0.00014907	474.26346198105165	78.103	0.89137	77.841	77.528	78.42	-0.26202					57	20	4	0	0	0	0.4752	1	9293	9293		60.972	7.6205	1	1661100			28562	3616	19691	19732	32927	32927					0.03698669040238656
ISSGVVSIW	9	Unmodified	_ISSGVVSIW_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.2640075683594	2	474.263468	946.512382	0.66579	0.00031576	-0.40764	-0.00019333	0.25814	0.00012243	474.2631458221152	78.044	0.8884	77.802	77.49	78.378	-0.24232					57	20	4	0	0	0	0.31247	2	9317	9295;9317		73.975	9.6365	1	2004700			28563	3616	19691	19732	32928;32929	32929					0.03698669040238656
ISSHYQLKDI	10	Unmodified	_ISSHYQLKDI_					0	0	0		CON__A2I7N3	CON__A2I7N3	CON__A2I7N3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.9034423828125	3	401.883789	1202.62954	-0.43161	-0.00017346	-2.8809	-0.0011578	-3.3125	-0.0013312	402.2165788960314	30.503	0.2115	30.354	30.259	30.471	-0.14952					5	4	2	0	0	0	0.03519	1	1939	1939		41.427	5.109	1	31894		+	28564	479	19692	19733	32930	32930					0.036327821891973144
ISSKHNSKQK	10	Unmodified	_ISSKHNSKQK_					0	0	0			REV__ENST00000261167.6_1_12:14942052-14943608:-|nuORF	REV__ENST00000261167.6_1_12:14942052-14943608:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7398681640625	2	578.825286	1155.63602	-0.17672	-0.00010229	-0.19605	-0.00011348	-0.37278	-0.00021577	578.8250903534931	35.227	0.62392	35.012	34.753	35.377	-0.21556					34	15	3	0	0	0	0.03519	1	2674	2674		54.776	22.821	1	760330	+		28565	29609	19693	19734	32931	32931					0.0644272014053513
ISSKKKRN	8	Unmodified	_ISSKKKRN_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2738342285156	2	480.801083	959.587613	-0.56093	-0.0002697	-3.6059	-0.0017337	-4.1668	-0.0020034	480.7992005310251	39.549	0.77572	39.326	38.999	39.775	-0.22311					42	19	3	0	0	0	0.027866	1	3318	3318		30.504	0	1	776110	+		28566	25416	19694	19735	32932	32932					0.10620271291327299
ISSLASWTVF	10	Unmodified	_ISSLASWTVF_					0	0	0			REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.2522583007812	2	555.795132	1109.57571	-0.70052	-0.00038934	0.25897	0.00014393	-0.44155	-0.00024541	555.7954654058069	57.784	0.38951	57.55	57.274	57.664	-0.23363					11	9	2	0	0	0	0.03519	1	6280	6280		35.618	0	1	87869	+		28567	26271	19695	19736	32933	32933					0.0253060975749122
ISSLNKIAD	9	Unmodified	_ISSLNKIAD_					0	0	0		nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;ENST00000553966.5_1_14:59814299-59830444:+|nuORF	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	480.771657	959.528761	0.43098	0.0002072	-3.7421	-0.0017991	-3.3111	-0.0015919	480.7704408533198	33.187	1.2497	33.244	32.721	33.971	0.056572					79	32	4	0	0	0	0.024292	1	2298	2298		58.782	11.125	1	4667800			28568	2224	19696	19737	32934	32934					0.047377502063341126
ISSLRETPN	9	Unmodified	_ISSLRETPN_					0	0	0		ENST00000438026.1_1_X:39085680-39085836:-|nuORF	ENST00000438026.1_1_X:39085680-39085836:-|nuORF	ENST00000438026.1_1_X:39085680-39085836:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2922058105469	2	508.772188	1015.52982	-0.3497	-0.00017792	-0.44444	-0.00022612	-0.79415	-0.00040404	508.77188732516845	51.027	0.60852	50.878	50.689	51.298	-0.14916					29	16	2	0	0	0	0.024447	1	5355	5355		25.574	0	1	1865000			28569	14304	19697	19738	32935	32935					0.022679645752305078
ISSNGVLKR	9	Unmodified	_ISSNGVLKR_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MSMS	OPSCC_39_ClassI_Rep-2	2	487.2893981933594	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.69	1	101.7	101.2	102.2	0.0078735								0	0	0	0.49967	1	12987	12987		52.937	3.4952	1				28570	858	19698	19739	32936	32936					0.08424565054417599
ISSPLKKSR	9	Unmodified	_ISSPLKKSR_					0	0	0		ENSG00000125482|ENST00000334270|TTF1;TTF1|p.K223Rfs*45|1|0.25|ENSG00000125482|chr9:132402154-132402154|T/-|frameshift_variant	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799987792969	2	508.316566	1014.61858	-0.68665	-0.00034904	3.7354	0.0018988	3.0488	0.0015497	508.3185414234355	47.91	0.33968	47.977	47.777	48.117	0.066795					10	9	2	0	0	0	0.024506	1	4805	4805		16.473	0	1	116700			28571	4109	19699	19740	32937	32937					0.1118542460557137
ISSQLDTIL	9	Unmodified	_ISSQLDTIL_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2977600097656	2	495.279315	988.544076	-0.015483	-7.6682E-06	0.69705	0.00034523	0.68157	0.00033757	495.2790866375514	54.692	0.39375	54.461	54.28	54.674	-0.23087					12	10	2	0	0	0	0.019436	1	5797	5797		118.74	17.142	1	79367	+		28572	23762	19700	19741	32938	32938					0.04934617003527819
ISSRSEPHHV	10	Unmodified	_ISSRSEPHHV_					0	0	0			REV__ENSG00000158258|ENST00000458420|CLSTN2	REV__ENSG00000158258|ENST00000458420|CLSTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.7929077148438	2	574.793986	1147.57342	-1.3461	-0.00077373	-0.50461	-0.00029005	-1.8507	-0.0010638	574.7936939051469	31.769	1.0656	31.769	31.428	32.494	0					78	26	5	0	0	0	1.0002	1	2142	2142		45.972	0	1	9584000	+		28573	25184	19701	19742	32939	32939					0.005535740723644267
ISSRVLGIQ	9	Unmodified	_ISSRVLGIQ_					0	0	0		ENST00000352385.2_1_15:65676444-65676708:-|nuORF	ENST00000352385.2_1_15:65676444-65676708:-|nuORF	ENST00000352385.2_1_15:65676444-65676708:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.79718017578125	2	486.795466	971.57638	0.60185	0.00029298	3.604	0.0017544	4.2059	0.0020474	486.7969195766796	59.637	0.55417	59.437	59.172	59.727	-0.20016					42	14	4	0	0	0	0.31037	1	6798	6798		74.255	13.283	1	3905600			28574	12604	19702	19743	32940	32940					0.08945449197187827
ISSSATATL	9	Unmodified	_ISSSATATL_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2588195800781	2	425.729458	849.444362	-0.19418	-8.2669E-05	2.2934	0.00097637	2.0992	0.0008937	425.73033420730786	40.862	0.5678	40.862	40.657	41.225	0					21	15	2	0	0	0	0.024323	1	3635	3635		14.865	0	1	133470	+		28575	25882	19703	19744	32941	32941					0.01361799389587759
ISSSTALFPT	10	Unmodified	_ISSSTALFPT_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2699584960938	2	512.27149	1022.52843	-0.053609	-2.7462E-05	-1.1778	-0.00060337	-1.2314	-0.00063083	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	1.1267	1	13256	13256		29.15	2.4566	1	4944800			28576	4079	19704	19745	32942	32942					0.018063304864881502
ISSSTALFPT	10	Unmodified	_ISSSTALFPT_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2714233398438	2	512.27149	1022.52843	-1.3044	-0.00066821	0.14151	7.249E-05	-1.1629	-0.00059572	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.941	1	13309	13309		51.335	7.2187	1	5095800			28577	4079	19704	19745	32943	32943					0.018063304864881502
ISSSTALFPT	10	Unmodified	_ISSSTALFPT_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2706909179688	2	512.27149	1022.52843	0.53902	0.00027612	-1.7123	-0.00087719	-1.1733	-0.00060106	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	1.0665	2	13312	13302;13312		37.159	1.5408	1	5030900			28578	4079	19704	19745	32944;32945	32945					0.018063304864881502
ISSSVPFVHW	10	Unmodified	_ISSSVPFVHW_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7403564453125	2	579.800749	1157.58694	-0.95235	-0.00055217	-1.4597	-0.00084632	-2.412	-0.0013985	579.7984878427524	35.407	0.31184	35.22	34.948	35.26	-0.18675					9	7	2	0	0	0	0.03519	1	2663	2663		24.203	9.3379	1	54117	+		28579	22656	19705	19746	32946	32946					0.014454318516072817
ISSTVKTQV	9	Unmodified	_ISSTVKTQV_					0	0	0			REV__ENSG00000279051|ENST00000302622|OR6Q1	REV__ENSG00000279051|ENST00000302622|OR6Q1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.7792053222656	2	481.779482	961.544411	0.43182	0.00020804	-0.30543	-0.00014715	0.12639	6.0891E-05	481.77922105443423	20.817	0.44256	20.886	20.661	21.103	0.068901					20	8	3	0	0	0	0.67687	1	544	544		47.657	0	1	140790	+		28580	29226	19706	19747	32947	32947					0.06210036723371104
ISSTVQRQL	9	Unmodified	_ISSTVQRQL_					0	0	0		ENST00000590168.5_1_17:74469085-74473795:-|nuORF;ENST00000587640.1_1_17:74472910-74477606:-|nuORF;ENST00000589582.5_1_17:74470614-74477615:-|nuORF;ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2	ENST00000590168.5_1_17:74469085-74473795:-|nuORF	ENST00000590168.5_1_17:74469085-74473795:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2955932617188	2	516.29583	1030.57711	0.08675	4.4788E-05	1.3936	0.00071949	1.4803	0.00076428	516.2963871309064	36.943	1.0938	36.75	36.375	37.469	-0.193					96	27	5	0	0	0	0.062622	3	2944	2933;2944;2958		124.08	30.937	1	5683300			28581	4364	19707	19748	32948;32949;32950	32949					0.06304243846238933
ISSTVQRQL	9	Unmodified	_ISSTVQRQL_					0	0	0		ENST00000590168.5_1_17:74469085-74473795:-|nuORF;ENST00000587640.1_1_17:74472910-74477606:-|nuORF;ENST00000589582.5_1_17:74470614-74477615:-|nuORF;ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2	ENST00000590168.5_1_17:74469085-74473795:-|nuORF	ENST00000590168.5_1_17:74469085-74473795:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2960205078125	2	516.29583	1030.57711	-0.41218	-0.00021281	1.7967	0.00092765	1.3846	0.00071484	516.2966569634165	36.966	1.0255	36.746	36.365	37.39	-0.2195					79	25	4	0	0	0	0.062622	1	2938	2938		124.08	30.937	1	5890400			28582	4364	19707	19748	32951	32951					0.06304243846238933
ISSTVQRQL	9	Unmodified	_ISSTVQRQL_					0	0	0		ENST00000590168.5_1_17:74469085-74473795:-|nuORF;ENST00000587640.1_1_17:74472910-74477606:-|nuORF;ENST00000589582.5_1_17:74470614-74477615:-|nuORF;ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2	ENST00000590168.5_1_17:74469085-74473795:-|nuORF	ENST00000590168.5_1_17:74469085-74473795:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2960205078125	2	516.29583	1030.57711	0.99515	0.00051379	0.18601	9.6037E-05	1.1812	0.00060983	516.2958802565673	36.915	1.1491	36.706	36.323	37.472	-0.2092					63	28	4	0	0	0	0.15366	2	2925	2925;2941		98.629	23.586	1	5425800			28583	4364	19707	19748	32952;32953	32952					0.06304243846238933
ISSVFKKR	8	Unmodified	_ISSVFKKR_					0	0	0			REV__nc|ENSG00000066827|Q9P243-3|ZFAT	REV__nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.8003234863281	2	482.800552	963.58655	0.97368	0.00047009	-1.155	-0.00055763	-0.18132	-8.7541E-05	482.79986757146673	19.976	0.72742	19.776	19.554	20.282	-0.2001					33	14	4	0	0	0	0.99042	1	475	475		38.806	0	1	640920	+		28584	20346	19708	19749	32954	32954					0.10330056922418862
ISSVGKPASV	10	Unmodified	_ISSVGKPASV_					0	0	0		IL4R-RBBP6|2|fusion;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;IL4R-RBBP6|3|fusion;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	IL4R-RBBP6|2|fusion	IL4R-RBBP6|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7768859863281	2	472.7742	943.533846	0.29213	0.00013811	4.3873	0.0020742	4.6794	0.0022123	472.7760702488584	79.302	2.2495	79.321	78.441	80.691	0.018677					107	53	3	0	0	0	0.59716	1	9750	9750		77.318	8.8329	1	1137800			28585	3917	19709	19750	32955	32955					0.059820540689429436
ISSYQLPK	8	Unmodified	_ISSYQLPK_					0	0	0			REV__ENSG00000188691|ENST00000532411|OR56A5	REV__ENSG00000188691|ENST00000532411|OR56A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2537841796875	2	468.263468	934.512382	0.049439	2.315E-05	1.6118	0.00075475	1.6612	0.0007779	468.26390321606067	48.691	0.59811	48.758	48.417	49.015	0.066795					22	16	2	0	0	0	0.027866	1	4940	4940		11.511	0	1	127440	+		28586	28054	19710	19751	32956	32956					0.042506690402206004
ISTCNVVDAH	10	Carbamidomethyl (C)	_ISTC(Carbamidomethyl (C))NVVDAH_	ISTC(1)NVVDAH		ISTC(110)NVVDAH		0	1	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2593994140625	2	558.26113	1114.50771	0.31106	0.00017365	-3.5593	-0.001987	-3.2482	-0.0018134	558.2590666489383	85.164	1.607	84.969	84.595	86.202	-0.19508					116	37	5	0	0	0	0.26127	2	10310	10310;10348		113.41	11.725	1	7435900	+		28587	22264	19711	19752	32957;32958	32957	291				-0.04496583164859658
ISTCNVVDAH	10	Carbamidomethyl (C)	_ISTC(Carbamidomethyl (C))NVVDAH_	ISTC(1)NVVDAH		ISTC(110)NVVDAH		0	1	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2596435546875	2	558.26113	1114.50771	0.76787	0.00042867	-4.1908	-0.0023395	-3.4229	-0.0019109	558.2587410751472	85.142	1.9027	84.992	84.497	86.4	-0.14967					131	44	5	0	0	0	0.26127	1	10318	10318		113.41	12.159	1	7922500	+		28588	22264	19711	19752	32959	32959	291				-0.04496583164859658
ISTCNVVDAH	10	Carbamidomethyl (C)	_ISTC(Carbamidomethyl (C))NVVDAH_	ISTC(1)NVVDAH		ISTC(90)NVVDAH		0	1	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2589721679688	2	558.26113	1114.50771	0.31026	0.00017321	-3.6526	-0.0020391	-3.3424	-0.0018659	558.2589797224895	85.106	2.0835	84.969	84.62	86.704	-0.13753					150	48	4	0	0	0	0.48123	1	10334	10334		90.37	15.327	1	8489200	+		28589	22264	19711	19752	32960	32960	291				-0.04496583164859658
ISTDHKKY	8	Unmodified	_ISTDHKKY_					0	0	0			REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.2629699707031	2	496.263999	990.513445	-0.61534	-0.00030537	0.56142	0.00027861	-0.053921	-2.6759E-05	496.26418948842223	29.516	0.71772	29.343	29.07	29.787	-0.17258					43	16	4	0	0	0	0.68535	1	1806	1806		68.485	5.5063	1	1379400	+		28590	31755	19712	19753	32961	32961					0.01780883409139733
ISTDHKKY	8	Unmodified	_ISTDHKKY_					0	0	0			REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.263999	990.513445	-0.92302	-0.00045806	1.1419	0.00056667	0.21885	0.00010861	496.2645086544363	29.622	0.7622	29.377	29.099	29.861	-0.24524	0.025462	0.00063282	NaN	68.485	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1240600	+		28591	31755	19712	19753							0.01780883409139733
ISTDHKKY	8	Unmodified	_ISTDHKKY_					0	0	0			REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	496.263999	990.513445	-0.61534	-0.00030537	0.56142	0.00027861	-0.053921	-2.6759E-05	496.26418948842223	29.516	0.71772	29.343	29.07	29.787	-0.17258	-0.0083502	5.6706E-05	NaN	68.485	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1379400	+		28592	31755	19712	19753							0.01780883409139733
ISTDHKKY	8	Unmodified	_ISTDHKKY_					0	0	0			REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	REV__ENST00000396965.5_1_X:47847972-47862008:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.263999	990.513445	-0.29684	-0.00014731	0.18839	9.3491E-05	-0.10845	-5.3819E-05	496.2639735089821	29.484	0.74842	29.334	29.044	29.792	-0.14952	-0.017112	-0.00031353	NaN	68.485	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303700	+		28593	31755	19712	19753							0.01780883409139733
ISTDPLGFKN	10	Unmodified	_ISTDPLGFKN_					0	0	0			REV__sp|P06794|VL1_HPV18MajorcapsidproteinL1OS=Humanpapillomavirustype18OX=333761GN=L1PE=1SV=1	REV__sp|P06794|VL1_HPV18MajorcapsidproteinL1OS=Humanpapillomavirustype18OX=333761GN=L1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7295532226562	2	546.290214	1090.56587	-0.28949	-0.00015814	0.52268	0.00028553	0.23319	0.00012739	546.7920833322102	61.55	0.29178	61.336	61.209	61.501	-0.21375					8	6	2	0	0	0	0.03519	1	6901	6901		44.377	0	1	61915	+		28594	37555	19713	19754	32962	32962					0.02421421752092101
ISTDPLGFKN	10	Unmodified	_ISTDPLGFKN_					0	0	0			REV__sp|P06794|VL1_HPV18MajorcapsidproteinL1OS=Humanpapillomavirustype18OX=333761GN=L1PE=1SV=1	REV__sp|P06794|VL1_HPV18MajorcapsidproteinL1OS=Humanpapillomavirustype18OX=333761GN=L1PE=1SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.290214	1090.56587	-0.42414	-0.0002317	0.67166	0.00036692	0.24752	0.00013522	546.7929602376536	61.264	0.26669	61.335	61.167	61.434	0.071125	-0.0005019	7.877E-05	NaN	44.377	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62909	+		28595	37555	19713	19754							0.02421421752092101
ISTFRTTL	8	Unmodified	_ISTFRTTL_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MSMS	OPSCC_39_ClassI_Rep-2	2	469.76922607421875	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.453	1	48.3	47.8	48.8	-0.15301								0	0	0	0.34253	1	4918	4918		88.643	3.2834	1		+		28596	27924	19714	19755	32963	32963					0.052020714145328384
ISTFRTTL	8	Unmodified	_ISTFRTTL_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MSMS	OPSCC_39_ClassI_Rep-3	3	469.76837158203125	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.163	1	48.229	47.729	48.729	0.066795								0	0	0	0.34253	1	4830	4830		88.643	3.2834	1		+		28597	27924	19714	19755	32964	32964					0.052020714145328384
ISTGLILVVK	10	Unmodified	_ISTGLILVVK_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7682495117188	2	521.847167	1041.67978	-1.0228	-0.00053374	-0.44727	-0.00023341	-1.4701	-0.00076714	521.8465420477862	55.627	0.4763	55.725	55.523	55.999	0.098015					25	12	3	0	0	0	0.03519	1	6066	6066		25.574	0	1	314080	+		28598	27563	19715	19756	32965	32965					0.16060936584972296
ISTGTDARET	10	Unmodified	_ISTGTDARET_					0	0	0			REV__ENSG00000138083|ENST00000260653|SIX3	REV__ENSG00000138083|ENST00000260653|SIX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7766723632812	2	525.756735	1049.49892	-0.55328	-0.00029089	1.9644	0.0010328	1.4111	0.00074189	525.7571236671337	49.086	0.76173	48.933	48.682	49.443	-0.15277					70	20	4	0	0	0	0.03519	1	5107	5107		31.53	7.0106	1	1974300	+		28599	23817	19716	19757	32966	32966					-0.023852335296624005
ISTGTDARET	10	Unmodified	_ISTGTDARET_					0	0	0			REV__ENSG00000138083|ENST00000260653|SIX3	REV__ENSG00000138083|ENST00000260653|SIX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7766723632812	2	525.756735	1049.49892	-0.28293	-0.00014875	1.7722	0.00093175	1.4893	0.000783	525.7572451425632	49.615	0.18895	49.464	49.407	49.596	-0.1512					6	4	2	0	0	0	0.03519	1	5107	5107		31.53	7.0106	1	56417	+		28600	23817	19716	19757	32967	32967					-0.023852335296624005
ISTIFFDTY	9	Unmodified	_ISTIFFDTY_					0	0	0		nc|ENSG00000149488|Q8TDI7-3|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3322143554688	2	553.773865	1105.53318	-0.20553	-0.00011382	0.0070726	3.9166E-06	-0.19846	-0.0001099	554.2748299591884	95.65	0.21526	95.65	95.476	95.691	0					5	4	2	0	0	0	0.024506	1	12171	12171		30.504	0	1	35260			28601	18374	19717	19758	32968	32968					-0.015367853707630275
ISTIGRLQV	9	Unmodified	_ISTIGRLQV_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2854309082031	2	493.803291	985.59203	0.31752	0.00015679	-0.61672	-0.00030454	-0.2992	-0.00014774	493.802895088817	51.75	1.094	51.75	51.501	52.595	0					67	29	4	0	0	0	0.024405	1	5470	5470		35.618	0	1	3483100			28602	1878	19718	19759	32969	32969					0.09865735714242874
ISTLHGHGR	9	Unmodified	_ISTLHGHGR_					0	0	0			REV__ENSG00000118900|ENST00000262376|UBN1	REV__ENSG00000118900|ENST00000262376|UBN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2865905761719	2	489.267407	976.520262	-0.36443	-0.0001783	4.125	0.0020182	3.7606	0.0018399	489.26932550083	91.286	2.1497	91.274	90.575	92.725	-0.012383					65	51	2	0	0	0	0.024506	1	11707	11707		30.504	0	1	546820	+		28603	22429	19719	19760	32970	32970					0.031062410803770035
ISTLHGHGR	9	Unmodified	_ISTLHGHGR_					0	0	0			REV__ENSG00000118900|ENST00000262376|UBN1	REV__ENSG00000118900|ENST00000262376|UBN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	489.267407	976.520262	-1.0782	-0.00052752	4.843	0.0023695	3.7648	0.001842	489.26965300132815	91.247	1.0517	91.247	91.011	92.062	0	-0.011724	0.00065358	NaN	44.117	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539040	+		28604	22429	19719	19760							0.031062410803770035
ISTLHGHGR	9	Unmodified	_ISTLHGHGR_					0	0	0			REV__ENSG00000118900|ENST00000262376|UBN1	REV__ENSG00000118900|ENST00000262376|UBN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.267407	976.520262	-0.37133	-0.00018168	9.8221	0.0048056	9.4508	0.004624	489.26909563912756	91.302	0.54816	91.179	90.994	91.542	-0.12341	-0.07976	0.0055258	NaN	44.117	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49539	+		28605	22429	19719	19760							0.031062410803770035
ISTLQAQLS	9	Unmodified	_ISTLQAQLS_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.26904296875	2	480.771657	959.528761	-0.53997	-0.0002596	-2.8871	-0.001388	-3.4271	-0.0016476	480.77098856202963	33.297	1.1837	33.304	32.776	33.959	0.0066223					82	31	4	0	0	0	0.42604	1	2363	2363		64.207	2.516	1	5782800			28606	8357	19720	19761	32971	32971					0.04737750206322744
ISTLRARSA	9	Unmodified	_ISTLRARSA_					0	0	0		ENST00000471864.1_1_9:38622050-38622341:+|nuORF	ENST00000471864.1_1_9:38622050-38622341:+|nuORF	ENST00000471864.1_1_9:38622050-38622341:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7903137207031	2	487.790715	973.566878	0.33726	0.00016451	-0.60673	-0.00029596	-0.26947	-0.00013144	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.89441	1	10178	10178		32.812	0.85756	1	1999500			28607	14974	19721	19762	32972	32972					0.0790368091164737
ISTLVVSTGTR	11	Unmodified	_ISTLVVSTGTR_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3298950195312	2	567.32987	1132.64519	-0.38591	-0.00021894	0.27778	0.00015759	-0.10813	-6.1347E-05	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0233	1	11211	11211		31.634	0.10446	1	4298500	+		28608	22345	19722	19763	32973	32973					0.08417068706239661
ISTPFYHQRVQ	11	Unmodified	_ISTPFYHQRVQ_					0	0	0		ENST00000392514.8_1_12:120635131-120635242:-|nuORF	ENST00000392514.8_1_12:120635131-120635242:-|nuORF	ENST00000392514.8_1_12:120635131-120635242:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2242431640625	3	459.242088	1374.70443	-0.65421	-0.00030044	-3.1692	-0.0014554	-3.8234	-0.0017559	459.23989394423256	26.592	0.83897	26.356	26.037	26.876	-0.23603					49	21	3	0	0	0	0.024747	1	1411	1411		33.039	0	1	794580			28609	13418	19723	19764	32974	32974					0.03206964720402539
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.30517578125	2	517.305667	1032.59678	0.44308	0.00022921	-1.3082	-0.00067675	-0.86514	-0.00044754	517.3050427085869	60.125	1.8537	59.928	59.537	61.391	-0.19742					146	46	6	0	0	0	0.056725	6	6702	6644;6653;6677;6689;6702;6715		126.24	45.956	1	55381000			28610	1121	19724	19765	32975;32976;32977;32978;32979;32980	32979					0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.3057861328125	2	517.305667	1032.59678	0.11292	5.8417E-05	-0.92904	-0.0004806	-0.81612	-0.00042218	517.3052361118528	60.027	1.6013	59.85	59.478	61.08	-0.1761					136	40	6	0	0	0	0.065	4	6670	6658;6670;6682;6695		123.21	61.101	1	59576000			28611	1121	19724	19765	32981;32982;32983;32984	32982					0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.3053588867188	2	517.305667	1032.59678	-0.22628	-0.00011706	-0.6467	-0.00033454	-0.87298	-0.0004516	517.3053769275191	60.164	1.7338	59.916	59.533	61.267	-0.24842					142	43	6	0	0	0	0.087669	4	6677	6677;6689;6701;6713		114.89	52.787	1	57074000			28612	1121	19724	19765	32985;32986;32987;32988	32985					0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.305667	1032.59678	0.69462	0.00035933	-2.1728	-0.001124	-1.4782	-0.00076469	517.304249729943	59.918	0.35131	59.918	59.637	59.988	0	0.025407	-0.0012616	NaN	126.24	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426620			28613	1121	19724	19765							0.08178619856994374
ISTPVIRTF	9	Unmodified	_ISTPVIRTF_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.305667	1032.59678	-0.91853	-0.00047516	-0.19277	-9.9721E-05	-1.1113	-0.00057488	517.3051693422008	59.765	0.44165	59.85	59.501	59.943	0.085682	-0.042019	0.00078703	NaN	126.24	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173790			28614	1121	19724	19765							0.08178619856994374
ISTQSHSVL	9	Unmodified	_ISTQSHSVL_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.26153564453125	2	486.261456	970.50836	-1.2066	-0.00058675	1.0185	0.00049527	-0.18813	-9.1481E-05	486.26183916381086	38.292	0.72641	38.292	38.071	38.797	0					53	19	4	0	0	0	0.50848	1	3195	3195		58.782	3.2778	1	6256500			28615	4231	19725	19766	32989	32989					0.021925795465335796
ISTQSHSVL	9	Unmodified	_ISTQSHSVL_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.261474609375	2	486.261456	970.50836	-2.0971	-0.0010198	1.8798	0.00091407	-0.21733	-0.00010568	486.2622740613007	38.373	1.083	38.401	38.162	39.245	0.027275					74	29	5	0	0	0	0.20967	1	3175	3175		87.754	26.782	1	5615200			28616	4231	19725	19766	32990	32990					0.021925795465335796
ISTRVGRSPP	10	Unmodified	_ISTRVGRSPP_					0	0	0			REV__ENST00000573440.1_1_16:680894-681299:+|nuORF	REV__ENST00000573440.1_1_16:680894-681299:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.26904296875	2	535.309272	1068.60399	-0.9152	-0.00048992	-3.1475	-0.0016849	-4.0627	-0.0021748	535.8093472763396	76.015	0.75048	76.015	75.806	76.556	0					41	18	3	0	0	0	0.03519	1	9373	9373		65.465	6.6834	1	240370	+		28617	35433	19726	19767	32991	32991					0.07243352457408037
ISTSPASPKT	10	Unmodified	_ISTSPASPKT_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.78216552734375	2	494.769114	987.523675	0.71559	0.00035405	-0.25851	-0.0001279	0.45709	0.00022615	494.76878276234214	65.585	0.47334	65.585	65.326	65.799	0					36	12	4	0	0	0	0.03519	1	7808	7808		39.253	6.4404	1	678490	+		28618	28222	19727	19768	32992	32992					0.029414463437205995
ISTSREPIR	9	Unmodified	_ISTSREPIR_					0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.8014526367188	2	529.80128	1057.58801	-0.32685	-0.00017316	-0.073786	-3.9092E-05	-0.40063	-0.00021226	529.8012558868443	40.928	1.0367	40.951	40.527	41.564	0.023006					66	29	3	0	0	0	0.25032	1	3594	3594		82.305	0.064519	1	8055600	+		28619	25424	19728	19769	32993	32993					0.06151646220496332
ISTVGENPMPP	11	Unmodified	_ISTVGENPMPP_					0	0	0		ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.3319091796875	2	571.281531	1140.54851	0.50024	0.00028578	-0.90929	-0.00051946	-0.40905	-0.00023368	571.2807865098379	64.08	0.57431	64.08	63.81	64.384	0					35	15	3	0	0	0	0.024762	1	7509	7509		30.318	0	1	713950			28620	16753	19729	19770	32994	32994					-0.01614241845209108
ISTVRDPAGI	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ISTVRDPAGI_					1	0	0			REV__ENST00000370200.5_1_10:102822849-102824042:+|nuORF	REV__ENST00000370200.5_1_10:102822849-102824042:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7978515625	2	535.795663	1069.57677	0.11248	6.0265E-05	3.7756	0.0020229	3.8881	0.0020832	535.7975379391108	89.057	2.0047	89.035	88.266	90.271	-0.021645					90	47	4	0	0	0	0.77808	1	11227	11227		62.107	9.8082	1	2767100	+		28621	31114	19730	19771	32995	32995					0.04476824126390966
ISTVSLILW	9	Unmodified	_ISTVSLILW_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7588500976562	2	516.310418	1030.60628	-0.14687	-7.5833E-05	0.0079262	4.0924E-06	-0.13895	-7.174E-05	516.3103546878601	73.787	0.46929	73.522	73.178	73.647	-0.26479					18	11	2	0	0	0	0.024412	1	8701	8701		40.573	0	1	156600	+		28622	29003	19731	19772	32996	32996					0.0922038814253483
ISTWLLWL	8	Unmodified	_ISTWLLWL_					0	0	0		ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2998046875	2	516.299853	1030.58515	0.10005	5.1658E-05	-0.27293	-0.00014091	-0.17288	-8.9256E-05	516.2997390890621	103.98	1.212	103.85	103.56	104.77	-0.12561					58	31	2	0	0	0	0.58212	1	12940	12940		77.944	1.0972	1	5785600			28623	3184	19732	19773	32997	32997					0.07108422833653094
ISTWLLWL	8	Unmodified	_ISTWLLWL_					0	0	0		ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2996215820312	2	516.299853	1030.58515	0.4081	0.0002107	-0.62063	-0.00032043	-0.21253	-0.00010973	516.2995417642799	104.08	1.4875	103.91	103.6	105.08	-0.16791					109	45	4	0	0	0	0.37803	1	12926	12926		100.27	4.225	1	7588000			28624	3184	19732	19773	32998	32998					0.07108422833653094
ISTWSLAGIT	10	Unmodified	_ISTWSLAGIT_					0	0	0		nc|ENSG00000132680|Q7Z7F0-3|KHDC4;ENST00000483237.1_1_1:155891178-155891799:-|nuORF	nc|ENSG00000132680|Q7Z7F0-3|KHDC4	nc|ENSG00000132680|Q7Z7F0-3|KHDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.309326171875	2	524.787307	1047.56006	1.0682	0.00056058	-0.91739	-0.00048144	0.15082	7.9147E-05	524.7867648822099	74.187	0.67914	74.187	73.955	74.635	0					35	15	3	0	0	0	0.03519	1	9049	9049		32.812	0	1	532590			28625	18277	19733	19774	32999	32999					0.038183232404207956
ISVAAAAAGPE	11	Unmodified	_ISVAAAAAGPE_					0	0	0			REV__ENSG00000178726|ENST00000377103|THBD	REV__ENSG00000178726|ENST00000377103|THBD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2458190917969	2	478.756007	955.497461	-0.4912	-0.00023517	-0.18402	-8.8101E-05	-0.67522	-0.00032327	478.7557852818137	51.403	0.5375	51.127	50.929	51.467	-0.27643					24	13	3	0	0	0	0.024812	1	5293	5293		33.922	0	1	740590	+		28626	27202	19734	19775	33000	33000					0.017931771722260237
ISVALRNL	8	Unmodified	_ISVALRNL_					0	0	0			REV__ENST00000228872.8_1_12:12870254-12870344:+|nuORF	REV__ENST00000228872.8_1_12:12870254-12870344:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.2797546386719	2	443.279452	884.544351	0.55456	0.00024582	-0.64779	-0.00028715	-0.093233	-4.1328E-05	443.2791051929255	54.982	2.6583	54.776	54.395	57.053	-0.20613					184	71	5	0	0	0	0.24001	1	5859	5859		133.81	0	1	11537000	+		28627	29395	19735	19776	33001	33001					0.09746081514015259
ISVANVVPEI	10	Unmodified	_ISVANVVPEI_					0	0	0			REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7835693359375	2	520.802957	1039.59136	-0.1533	-7.9842E-05	1.5212	0.00079226	1.3679	0.00071242	520.8035910447571	104.24	0.41429	104.25	104.06	104.48	0.0031357					13	9	2	0	0	0	0.03519	1	13324	13324		40.778	0	1	42047	+		28628	24242	19736	19777	33002	33002					0.07314896274510829
ISVANVVPEI	10	Unmodified	_ISVANVVPEI_					0	0	0			REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7838134765625	2	520.802957	1039.59136	-0.94181	-0.0004905	1.2584	0.00065537	0.31658	0.00016488	521.3053312976957	106.9	0.14267	106.77	106.66	106.81	-0.1346					9	6	2	0	0	0	0.03519	1	13271	13271		56.721	12.604	1	56404	+		28629	24242	19736	19777	33003	33003					0.07314896274510829
ISVASIVAGL	10	Unmodified	_ISVASIVAGL_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.286943	928.559333	-0.28139	-0.00013093	-0.13536	-6.2979E-05	-0.41674	-0.00019391	465.2867434848162	93.798	0.85059	93.796	93.455	94.306	-0.0013962					51	20	4	0	0	0	0.47726	1	11899	11899		90.777	5.8611	1	2192800	+		28630	24308	19737	19778	33004	33004					0.09219528591370363
ISVASIVAGL	10	Unmodified	_ISVASIVAGL_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2875061035156	2	465.286943	928.559333	0.10974	5.1059E-05	-0.42536	-0.00019791	-0.31562	-0.00014686	465.28662318850553	93.902	0.76319	93.908	93.562	94.325	0.0059814					55	18	4	0	0	0	0.47726	1	11863	11863		90.777	0	1	2067300	+		28631	24308	19737	19778	33005	33005					0.09219528591370363
ISVASIVAGL	10	Unmodified	_ISVASIVAGL_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	465.286943	928.559333	0.10974	5.1059E-05	-0.42536	-0.00019791	-0.31562	-0.00014686	465.28662318850553	93.902	0.76319	93.908	93.562	94.325	0.0059814	0.16397	-0.00017323	NaN	90.777	55	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2067300	+		28632	24308	19737	19778							0.09219528591370363
ISVASIVAGL	10	Unmodified	_ISVASIVAGL_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.286943	928.559333	-1.0035	-0.00046694	0.86726	0.00040353	-0.13628	-6.3411E-05	465.2872175702603	93.678	0.65345	93.538	93.309	93.963	-0.13995	-0.20662	0.0010296	NaN	90.777	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399070	+		28633	24308	19737	19778							0.09219528591370363
ISVASIVAGL	10	Unmodified	_ISVASIVAGL_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.286943	928.559333	0.27166	0.0001264	-0.56272	-0.00026182	-0.29105	-0.00013542	465.2865944442554	93.765	0.64987	93.643	93.366	94.016	-0.12215	-0.1016	-0.00030105	NaN	90.777	31	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340520	+		28634	24308	19737	19778							0.09219528591370363
ISVASIVAGL	10	Unmodified	_ISVASIVAGL_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.286943	928.559333	-0.17406	-8.0987E-05	-0.27697	-0.00012887	-0.45102	-0.00020986	465.2866622234301	93.821	0.69254	93.673	93.435	94.128	-0.14771	-0.070982	-3.5139E-05	NaN	90.777	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327700	+		28635	24308	19737	19778							0.09219528591370363
ISVCLLPCV	9	Unmodified	_ISVCLLPCV_					0	0	0			REV__ENST00000504704.6_1_4:159690364-159754995:+|nuORF	REV__ENST00000504704.6_1_4:159690364-159754995:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7583312988281	2	473.758649	945.502746	0.32244	0.00015276	-1.1695	-0.00055408	-0.8471	-0.00040132	473.75808099436915	82.734	1.1183	82.554	82.157	83.275	-0.18079					53	25	3	0	0	0	0.33184	1	9972	9972		71.378	2.5911	1	1089500	+		28636	33990	19738	19779	33006	33006					0.027814414388444675
ISVCMLVFV	9	Carbamidomethyl (C)	_ISVC(Carbamidomethyl (C))MLVFV_	ISVC(1)MLVFV		ISVC(58)MLVFV		0	1	0		ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	ENSG00000158258|ENST00000458420|CLSTN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.28515625	2	534.285031	1066.55551	-0.18865	-0.00010079	-0.65168	-0.00034818	-0.84034	-0.00044898	534.2849371700632	106.21	1.4778	106.08	105.4	106.88	-0.1238					106	54	3	0	0	0	0.52323	1	13229	13229		57.811	8.3697	1	251420			28637	6656	19739	19780	33007	33007	82				0.02489399501655498
ISVEQDGKV	9	Unmodified	_ISVEQDGKV_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.76116943359375	2	487.761289	973.508025	1.1923	0.00058155	-1.019	-0.00049705	0.17324	8.45E-05	487.76069590877734	37.061	0.83569	37.061	36.724	37.559	0					53	21	4	0	0	0	0.16638	1	2977	2977		95.815	2.2176	1	5216000			28638	1561	19740	19781	33008	33008					0.020211598266769215
ISVEQDGKV	9	Unmodified	_ISVEQDGKV_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7611999511719	2	487.761289	973.508025	0.074742	3.6456E-05	0.062119	3.0299E-05	0.13686	6.6755E-05	487.7612513394715	36.912	0.90719	36.848	36.508	37.415	-0.063385					76	23	6	0	0	0	0.14024	1	2955	2955		101.6	13.424	1	5305800			28639	1561	19740	19781	33009	33009					0.020211598266769215
ISVETLKEV	9	Unmodified	_ISVETLKEV_					0	0	0			REV__nc|ENSG00000138363|P31939-2|ATIC	REV__nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.2943420410156	2	509.294965	1016.57538	1.4237	0.00072508	-1.744	-0.00088822	-0.32032	-0.00016314	509.2939627518689	63.522	1.152	63.576	63.267	64.419	0.054104					80	31	4	0	0	0	0.03666	1	7369	7369		136.27	8.8064	1	8241200	+		28640	23845	19741	19782	33010	33010					0.06775190037615175
ISVFAVKMA	9	Unmodified	_ISVFAVKMA_					0	0	0		ENSG00000134769|ENST00000444659|DTNA;nc|ENSG00000134769|Q9Y4J8|DTNA;nc|ENSG00000134769|Q9Y4J8-15|DTNA;nc|ENSG00000134769|Q9Y4J8-14|DTNA;nc|ENSG00000134769|Q9Y4J8-2|DTNA;nc|ENSG00000134769|Q9Y4J8-13|DTNA;nc|ENSG00000134769|Q9Y4J8-16|DTNA;nc|ENSG00000134769|Q9Y4J8-5|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;nc|ENSG00000134769|Q9Y4J8-12|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000134769|Q9Y4J8-7|DTNA;nc|ENSG00000134769|Q9Y4J8-9|DTNA	ENSG00000134769|ENST00000444659|DTNA	ENSG00000134769|ENST00000444659|DTNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.27825927734375	2	483.278063	964.541574	-0.79744	-0.00038539	2.4382	0.0011783	1.6407	0.00079293	483.2793297225344	94.263	1.837	94.269	93.391	95.228	0.0059814					108	43	5	0	0	0	0.99726	1	11918	11918		20.947	1.587	1	1179500			28641	4827	19742	19783	33011	33011					0.057884900648673465
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.800048828125	2	479.800217	957.585882	0.13205	6.3358E-05	-0.95677	-0.00045906	-0.82472	-0.0003957	479.7997429560041	27.15	1.8721	27.15	26.741	28.613	0					109	47	5	0	0	0	0.043667	1	1453	1453		131.03	3.5697	1	9170000	+		28642	25017;36804	19743	19784	33012	33012					0.1053921748269886
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7999267578125	2	479.800217	957.585882	-0.20709	-9.9361E-05	-0.63012	-0.00030233	-0.83721	-0.00040169	479.7998909925094	27.099	1.5372	27.086	26.828	28.365	-0.012983					101	39	5	0	0	0	0.03849	1	1437	1437		134.81	7.3491	1	8444300	+		28643	25017;36804	19743	19784	33013	33013					0.1053921748269886
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.80047607421875	2	479.800217	957.585882	-0.53026	-0.00025442	-0.069474	-3.3334E-05	-0.59973	-0.00028775	479.80016106242334	27.079	1.6197	26.911	26.594	28.213	-0.16816					69	38	4	0	0	0	0.14024	1	1480	1480		101.6	11.231	1	7179200	+		28644	25017;36804	19743	19784	33014	33014					0.1053921748269886
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7997131347656	2	479.800217	957.585882	-0.049965	-2.3973E-05	-0.65426	-0.00031391	-0.70422	-0.00033789	479.79994306575855	27.321	1.3138	27.164	26.844	28.158	-0.15664					56	31	4	0	0	0	0.057894	2	1457	1457;1493		125.81	9.4581	1	9005200	+		28645	25017;36804	19743	19784	33015;33016	33015					0.1053921748269886
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	479.800217	957.585882	0.13205	6.3358E-05	-0.95677	-0.00045906	-0.82472	-0.0003957	479.7997429560041	27.15	1.8721	27.15	26.741	28.613	0	0.087943	-0.00051475	NaN	134.81	109	47	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9170000	+		28646	25017;36804	19743	19784							0.1053921748269886
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	479.800217	957.585882	-0.20709	-9.9361E-05	-0.63012	-0.00030233	-0.83721	-0.00040169	479.7998909925094	27.099	1.5372	27.086	26.828	28.365	-0.012983	0.023935	-0.0002013	NaN	134.81	101	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8444300	+		28647	25017;36804	19743	19784							0.1053921748269886
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	479.800217	957.585882	-1.0179	-0.00048839	0.16014	7.6833E-05	-0.85776	-0.00041155	479.8002873956686	26.965	1.9416	27.046	26.758	28.699	0.081293	-0.016112	0.00055703	NaN	134.81	104	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11813000	+		28648	25017;36804	19743	19784							0.1053921748269886
ISVHDSVI	8	Unmodified	_ISVHDSVI_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.5471496582031	2	435.239993	868.465432	-0.68343	-0.00029746	-0.037355	-1.6258E-05	-0.72079	-0.00031372	435.24028988809476	29.808	0.54996	29.635	29.365	29.915	-0.17258					33	12	4	0	0	0	0.027866	1	1818	1818		12.959	2.6939	1	255610			28649	1536	19744	19785	33017	33017					0.025938094890989305
ISVHPENSD	9	Unmodified	_ISVHPENSD_					0	0	0		ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	ENSG00000083223|ENST00000375963|TUT7	ENSG00000083223|ENST00000375963|TUT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2496032714844	2	499.232896	996.451239	-0.89155	-0.00044509	0.90983	0.00045422	0.018278	9.1252E-06	499.23328205422547	28.891	0.3755	28.891	28.736	29.112	0					19	8	3	0	0	0	0.023417	1	1743	1743		58.782	7.4465	1	126140			28650	1748	19745	19786	33018	33018					-0.04712887729863269
ISVILGDRW	9	Unmodified	_ISVILGDRW_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.825927734375	2	529.803291	1057.59203	-0.75271	-0.00039879	0.086643	4.5904E-05	-0.66607	-0.00035289	529.8037174950051	68.618	0.76608	68.356	67.98	68.747	-0.26165					36	16	3	0	0	0	0.02062	1	7930	7930		85.862	13.984	1	2187000			28651	2730	19746	19787	33019	33019					0.06553735714237519
ISVKKFAGVN	10	Unmodified	_ISVKKFAGVN_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.81591796875	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.0002	1	10736	10736		45.972	0	1	4521600	+		28652	20103	19747	19788	33020	33020					0.09498308748334239
ISVKPLDNW	9	Unmodified	_ISVKPLDNW_					0	0	0		nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7733764648438	2	536.295299	1070.57605	-0.70302	-0.00037703	0.99446	0.00053332	0.29143	0.00015629	536.2962023080962	41.833	0.33102	41.603	41.394	41.725	-0.23029					13	8	2	0	0	0	0.024344	1	3690	3690		37.812	0	1	78464			28653	4090	19748	19789	33021	33021					0.043580294773164496
ISVKQEITF	9	Unmodified	_ISVKQEITF_					0	0	0		ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.8060913085938	2	532.802957	1063.59136	-0.2124	-0.00011317	0.10298	5.4868E-05	-0.10942	-5.8299E-05	532.8027561062206	58.514	0.65641	58.326	58.007	58.663	-0.18795					38	15	4	0	0	0	0.01896	1	6423	6423		150.36	31.619	1	1852200			28654	7158	19749	19790	33022	33022					0.06210896274501465
ISVKQEITF	9	Unmodified	_ISVKQEITF_					0	0	0		ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.8073120117188	2	532.802957	1063.59136	-0.41942	-0.00022347	0.48431	0.00025804	0.064889	3.4573E-05	532.8030244846284	58.417	0.47617	58.226	58.02	58.496	-0.19017					30	11	3	0	0	0	0.20652	1	6422	6422		88.177	0.4805	1	1914900			28655	7158	19749	19790	33023	33023					0.06210896274501465
ISVKQEITF	9	Unmodified	_ISVKQEITF_					0	0	0		ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ENSG00000163848|ENST00000360647|ZNF148	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENST00000497929.1_1_3:124951187-125011317:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.802957	1063.59136	-0.38996	-0.00020777	-4.2065	-0.0022412	-4.5965	-0.002449	532.8017286401252	58.063	0.3559	58.063	57.91	58.266	0	-0.17745	-0.004402	NaN	150.36	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159910			28656	7158	19749	19790							0.06210896274501465
ISVLNTTIL	9	Unmodified	_ISVLNTTIL_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7828369140625	2	487.30005	972.585547	0.010794	5.2601E-06	-1.8102	-0.00088212	-1.7994	-0.00087686	487.2987719667102	88.866	0.34081	88.882	88.667	89.007	0.015907					11	7	2	0	0	0	0.024457	1	11144	11144		29.15	0	1	50085			28657	8255	19750	19791	33024	33024					0.09815797762848888
ISVLQFANNI	10	Unmodified	_ISVLQFANNI_					0	0	0			REV__ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	REV__ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8158569335938	2	559.813856	1117.61316	-0.92953	-0.00052036	3.9468	0.0022095	3.0173	0.0016891	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	1.0236	1	10072	10072		42.864	2.0861	1	11139000	+		28658	25734	19751	19792	33025	33025					0.05905701023084475
ISVLVMMIM	9	Unmodified	_ISVLVMMIM_					0	0	0			REV__ENST00000415922.6_1_6:26636045-26636150:-|nuORF	REV__ENST00000415922.6_1_6:26636045-26636150:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2949829101562	2	518.78381	1035.55307	-1.0085	-0.0005232	2.2069	0.0011449	1.1984	0.00062169	518.7849517456245	34.034	0.7907	33.859	33.583	34.374	-0.17557					37	19	3	0	0	0	0.024535	1	2518	2518		25.45	8.0852	1	399770	+		28659	32068	19752	19793	33026	33026					0.03671227772315433
ISVPFLHSV	9	Unmodified	_ISVPFLHSV_					0	0	0		ENST00000308020.5_1_11:490638-491184:+|nuORF	ENST00000308020.5_1_11:490638-491184:+|nuORF	ENST00000308020.5_1_11:490638-491184:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7706298828125	2	499.78711	997.559667	-0.25957	-0.00012973	0.48522	0.00024251	0.22565	0.00011278	499.7870590574709	65.06	1.1148	65.097	64.517	65.631	0.037384					88	30	5	0	0	0	0.024381	1	7656	7656		29.15	0	1	1775900			28660	12019	19753	19794	33027	33027					0.060789483112330345
ISVPGLQTNW	10	Unmodified	_ISVPGLQTNW_					0	0	0		ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.7979125976562	2	557.798206	1113.58186	0.35901	0.00020025	-0.77869	-0.00043435	-0.41968	-0.0002341	557.7977399723883	82.037	1.2861	81.808	81.271	82.557	-0.22891					75	29	4	0	0	0	0.54901	2	9880	9856;9880		82.75	18.543	1	2078200			28661	4486	19754	19795	33028;33029	33029					0.029611279890104925
ISVPGLQTNW	10	Unmodified	_ISVPGLQTNW_					0	0	0		ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.7984008789062	2	557.798206	1113.58186	0.13904	7.7555E-05	-0.49409	-0.0002756	-0.35506	-0.00019805	557.797964439969	82.082	1.2903	81.889	81.419	82.709	-0.19333					81	29	4	0	0	0	0.42812	4	9870	9870;9881;9894;9907		95.815	26.188	1	1952800			28662	4486	19754	19795	33030;33031;33032;33033	33030					0.029611279890104925
ISVPGLQTNW	10	Unmodified	_ISVPGLQTNW_					0	0	0		ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.7979125976562	2	557.798206	1113.58186	-0.94556	-0.00052743	0.59737	0.00033321	-0.34819	-0.00019422	557.7984858555403	82.025	0.94682	81.885	81.443	82.39	-0.14014					71	21	4	0	0	0	0.45418	4	9865	9844;9853;9865;9878		93.143	31.452	1	1866300			28663	4486	19754	19795	33034;33035;33036;33037	33036					0.029611279890104925
ISVPIFKQF	9	Unmodified	_ISVPIFKQF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8181762695312	2	539.81841	1077.62227	-0.21374	-0.00011538	-0.58081	-0.00031353	-0.79455	-0.00042891	539.8181519528129	74.65	2.7949	74.375	74.045	76.84	-0.27573					193	67	6	0	0	0	0.013887	7	8797	8773;8785;8797;8809;8821;8833;8847		201.49	96.439	1	83358000			28664	3480	19755	19796	33038;33039;33040;33041;33042;33043;33044	33040					0.08656094379398382
ISVPIFKQF	9	Unmodified	_ISVPIFKQF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.8184204101562	2	539.81841	1077.62227	-0.15241	-8.2276E-05	-0.48222	-0.00026031	-0.63463	-0.00034259	539.8181960524045	74.605	2.8012	74.341	74.01	76.811	-0.26325					200	67	5	0	0	0	0.012289	7	8795	8783;8795;8807;8819;8831;8843;8855		227.71	109.79	1	62020000			28665	3480	19755	19796	33045;33046;33047;33048;33049;33050;33051	33046					0.08656094379398382
ISVPIFKQF	9	Unmodified	_ISVPIFKQF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8182373046875	2	539.81841	1077.62227	-0.35166	-0.00018983	-0.2413	-0.00013026	-0.59296	-0.00032009	539.8182956716695	74.427	2.9668	74.244	73.918	76.885	-0.18279					198	71	6	0	0	0	0.013094	8	8812	8740;8750;8762;8774;8787;8799;8812;8824		211.39	112.01	1	59599000			28666	3480	19755	19796	33052;33053;33054;33055;33056;33057;33058;33059	33058					0.08656094379398382
ISVQLLGVF	9	Unmodified	_ISVQLLGVF_					0	0	0		nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8;ENST00000341617.7_1_7:126079175-126341814:-|nuORF;nc|ENSG00000196277|Q14831-5|GRM7;nc|ENSG00000196277|Q14831-3|GRM7;nc|ENSG00000196277|Q14831-4|GRM7;ENSG00000196277|ENST00000357716|GRM7;nc|ENSG00000196277|Q14831-2|GRM7	nc|ENSG00000179603|O00222-2|GRM8	nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.26116943359375	2	488.29731	974.580068	-0.55722	-0.00027209	-1.1315	-0.00055253	-1.6888	-0.00082462	488.29665882312685	45.869	0.68647	45.666	45.358	46.044	-0.20226					26	18	2	0	0	0	0.024325	1	4404	4404		31.955	5.2619	1	712520			28667	8909	19756	19797	33060	33060					0.09176118971049618
ISVSGSAPFF	10	Unmodified	_ISVSGSAPFF_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.81085205078125	2	506.260925	1010.5073	-0.56404	-0.00028555	-0.4201	-0.00021268	-0.98414	-0.00049823	506.2604432669921	45.166	0.4463	45.066	45.012	45.458	-0.099445					22	12	2	0	0	0	0.03519	1	4297	4297		44.117	0	1	1779400	+		28668	26915	19757	19798	33061	33061					0.0024636517761109644
ISVSHVNLT	9	Unmodified	_ISVSHVNLT_					0	0	0		nc|ENSG00000140538|Q16288-2|NTRK3;nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-3|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ENSG00000140538|ENST00000629765|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.27197265625	2	485.271824	968.529095	-0.21698	-0.00010529	-0.34295	-0.00016642	-0.55993	-0.00027172	485.2716489211315	32.865	1.4354	32.699	32.237	33.672	-0.16565					90	35	4	0	0	0	0.29158	1	2317	2317		76.774	1.7308	1	13344000			28669	5423	19758	19799	33062	33062					0.0435716992617472
ISVSLIAEV	9	Unmodified	_ISVSLIAEV_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7791748046875	2	465.778951	929.543348	0.3767	0.00017546	-3.2562	-0.0015167	-2.8795	-0.0013412	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.53979	1	9652	9652		56.721	12.604	1	1283800	+		28670	23732	19759	19800	33063	33063					0.07575822354465345
ISVSLIAEV	9	Unmodified	_ISVSLIAEV_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.77911376953125	2	465.778951	929.543348	0.30012	0.00013979	-3.2664	-0.0015214	-2.9663	-0.0013816	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.18915	1	9649	9649		90.777	27.47	1	1281300	+		28671	23732	19759	19800	33064	33064					0.07575822354465345
ISVTLGNLIY	10	Unmodified	_ISVTLGNLIY_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1	REV__ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.8189086914062	2	546.818607	1091.62266	-0.63067	-0.00034486	0.082936	4.5351E-05	-0.54773	-0.00029951	546.8187258534341	64.65	1.525	64.416	63.982	65.507	-0.2345					92	37	4	0	0	0	0.80817	1	7376	7376		60.118	5.3419	1	8176900	+		28672	27427	19760	19801	33065	33065					0.08051469308611559
ISVTPKKTS	9	Unmodified	_ISVTPKKTS_					0	0	0			REV__nc|ENSG00000146839|Q9Y493-5|ZAN	REV__nc|ENSG00000146839|Q9Y493-5|ZAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7492370605469	2	480.78985	959.565146	-0.53987	-0.00025956	1.5801	0.00075972	1.0403	0.00050016	480.79047206478964	33.095	0.33922	33.102	32.85	33.189	0.0066261					13	8	2	0	0	0	0.024205	1	2312	2312		35.618	0	1	118900	+		28673	24514	19761	19802	33066	33066					0.0837462710304635
ISVVEMRSP	9	Unmodified	_ISVVEMRSP_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7452392578125	2	509.273509	1016.53247	-1.7901	-0.00091165	-1.9513	-0.00099377	-3.7414	-0.0019054	509.27308661448745	38.345	0.97243	38.373	37.987	38.96	0.027275					49	26	3	0	0	0	0.02435	1	3244	3244		42.396	1.618	1	654270	+		28674	20192	19762	19803	33067	33067					0.024860967085487573
ISVVGLLVYA	10	Unmodified	_ISVVGLLVYA_					0	0	0		ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2401733398438	2	517.318243	1032.62193	0.079997	4.1384E-05	2.2557	0.0011669	2.3357	0.0012083	517.3193278132688	78.252	0.73108	78.097	77.914	78.645	-0.15591					26	16	2	0	0	0	0.03519	1	9375	9375		30.504	0	1	177330			28675	16960	19763	19804	33068	33068					0.10692674659571821
ISVVKRFGY	9	Unmodified	_ISVVKRFGY_					0	0	0			REV__ENSG00000102878|ENST00000521374|HSF4	REV__ENSG00000102878|ENST00000521374|HSF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7517700195312	2	534.813659	1067.61277	-0.69131	-0.00036972	-1.2581	-0.00067285	-1.9494	-0.0010426	534.813512862491	40.101	0.33186	39.951	39.821	40.153	-0.1497					13	8	2	0	0	0	0.024436	1	3438	3438		30.504	0	1	184000	+		28676	21334	19764	19805	33069	33069					0.08166326093919452
ISVVKRFGY	9	Unmodified	_ISVVKRFGY_					0	0	0			REV__ENSG00000102878|ENST00000521374|HSF4	REV__ENSG00000102878|ENST00000521374|HSF4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.813659	1067.61277	-0.27391	-0.00014649	-2.5699	-0.0013744	-2.8438	-0.0015209	534.8118610136637	40.103	0.40156	40.103	39.879	40.281	0	0.062484	-0.0018481	NaN	30.504	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120250	+		28677	21334	19764	19805							0.08166326093919452
ISVVLQVIL	9	Unmodified	_ISVVLQVIL_					0	0	0		ENST00000594511.1_1_19:44078923-44079610:-|nuORF	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	ENST00000594511.1_1_19:44078923-44079610:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.3108825683594	2	492.328611	982.642668	-0.10418	-5.1292E-05	4.0905	0.0020139	3.9864	0.0019626	492.330898071732	62.082	0.36749	61.855	61.611	61.979	-0.22663					17	9	3	0	0	0	0.024405	1	7168	7168		44.117	19.914	1	187500			28678	17407	19765	19806	33070	33070					0.1506526503923169
ISWAMMAIL	9	Unmodified	_ISWAMMAIL_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7784423828125	2	518.271924	1034.52929	-0.2255	-0.00011687	-1.5837	-0.00082078	-1.8092	-0.00093765	518.2719826074953	85.918	0.76987	85.869	85.694	86.463	-0.048126					24	17	2	0	0	0	0.024325	1	10751	10751		50.025	5.4935	1	123180	+		28679	24979	19766	19807	33071	33071					0.013411303301836597
ISWEELANL	9	Unmodified	_ISWEELANL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7760009765625	2	537.776939	1073.53933	-0.72064	-0.00038754	0.93017	0.00050023	0.20953	0.00011268	537.7773364423226	79.238	0.83433	79.238	78.91	79.744	0					61	19	4	0	0	0	0.45795	1	9845	9845		62.107	8.756	1	2085300	+		28680	29042	19767	19808	33072	33072					0.005497328607589225
ISWEELANL	9	Unmodified	_ISWEELANL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.77587890625	2	537.776939	1073.53933	-1.3566	-0.00072955	1.4186	0.00076291	0.062028	3.3357E-05	537.7776030119383	79.449	0.87725	79.277	78.902	79.78	-0.17226					64	20	4	0	0	0	0.33245	1	9819	9819		71.296	2.5089	1	1839600	+		28681	29042	19767	19808	33073	33073					0.005497328607589225
ISWEELANL	9	Unmodified	_ISWEELANL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7759399414062	2	537.776939	1073.53933	-0.70425	-0.00037873	0.71417	0.00038406	0.0099194	5.3344E-06	537.777225572265	79.232	0.90788	79.251	78.735	79.643	0.018677					58	19	4	0	0	0	0.11092	1	9755	9755		108.09	3.3409	1	2046700	+		28682	29042	19767	19808	33074	33074					0.005497328607589225
ISWEELANL	9	Unmodified	_ISWEELANL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.775634765625	2	537.776939	1073.53933	0.33107	0.00017804	-0.11118	-5.9792E-05	0.21988	0.00011825	537.7768255231804	79.461	1.0854	79.215	78.822	79.907	-0.2465					74	25	4	0	0	0	0.34489	1	9527	9527		69.628	5.4204	1	4043500	+		28683	29042	19767	19808	33075	33075					0.005497328607589225
ISWFSVDN	8	Unmodified	_ISWFSVDN_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2742004394531	2	484.229625	966.444697	-1.1731	-0.00056805	-3.5507	-0.0017193	-4.7238	-0.0022874	484.2278172282105	30.405	0.2921	30.405	30.258	30.55	0					10	6	2	0	0	0	0.027866	1	1961	1961		12.207	0	1	48990	+		28684	21973	19768	19809	33076	33076					-0.039867808905796664
ISWGQGHFW	9	Unmodified	_ISWGQGHFW_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2431030273438	2	559.264333	1116.51411	-0.45697	-0.00025557	0.27758	0.00015524	-0.17939	-0.00010032	559.2645153797025	69.96	0.8294	69.693	69.368	70.198	-0.26724					59	19	4	0	0	0	0.023635	1	8116	8116		87.754	36.562	1	707940			28685	8804	19769	19810	33077	33077					-0.03948277151130242
ISWGQGHFW	9	Unmodified	_ISWGQGHFW_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2438354492188	2	559.264333	1116.51411	-0.13901	-7.7744E-05	-0.12168	-6.8051E-05	-0.26069	-0.0001458	559.2642947648906	69.891	0.7808	69.668	69.307	70.087	-0.22245					46	18	3	0	0	0	0.023007	1	8108	8108		56.721	3.3696	1	896430			28686	8804	19769	19810	33078	33078					-0.03948277151130242
ISWGQGHFW	9	Unmodified	_ISWGQGHFW_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	559.264333	1116.51411	0.1334	7.4604E-05	-0.93096	-0.00052065	-0.79756	-0.00044605	559.7646374837273	69.868	0.32587	69.868	69.629	69.954	0	0.15667	-0.00095864	NaN	56.721	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145250			28687	8804	19769	19810							-0.03948277151130242
ISWGQGHFW	9	Unmodified	_ISWGQGHFW_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.264333	1116.51411	0.015996	8.9462E-06	-0.24077	-0.00013465	-0.22477	-0.00012571	559.2642613764331	69.867	0.90561	69.616	69.276	70.182	-0.25063	-0.095353	-0.00018664	NaN	56.721	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733040			28688	8804	19769	19810							-0.03948277151130242
ISWQFLIVL	9	Unmodified	_ISWQFLIVL_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2705078125	2	559.83406	1117.65357	-0.43495	-0.0002435	-3.6738	-0.0020567	-4.1087	-0.0023002	559.8319077333846	63.199	0.97971	63.199	62.651	63.631	0					42	25	3	0	0	0	0.023596	1	7309	7309		44.117	0	1	706570			28689	3524	19770	19811	33079	33079					0.09944667413492425
ISWSECWEV	9	Unmodified	_ISWSECWEV_					0	0	0		ENST00000367606.7_1_14:21976360-21979446:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7486572265625	2	569.747324	1137.4801	-0.3311	-0.00018864	3.2664	0.001861	2.9353	0.0016724	569.7491241451817	69.95	0.90935	69.683	69.327	70.237	-0.26725					68	21	4	0	0	0	0.096521	4	8138	8102;8114;8126;8138		111.65	34.289	1	7267900			28690	12869	19771	19812	33080;33081;33082;33083	33083					-0.08314486425069845
ISWSECWEV	9	Unmodified	_ISWSECWEV_					0	0	0		ENST00000367606.7_1_14:21976360-21979446:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7489013671875	2	569.747324	1137.4801	0.16043	9.1404E-05	2.7928	0.0015912	2.9532	0.0016826	569.7488751668743	69.852	0.98575	69.602	69.196	70.182	-0.25063					60	23	3	0	0	0	0.08613	5	8146	8101;8109;8121;8133;8146		115.46	26.816	1	7570600			28691	12869	19771	19812	33084;33085;33086;33087;33088	33088					-0.08314486425069845
ISWSECWEV	9	Unmodified	_ISWSECWEV_					0	0	0		ENST00000367606.7_1_14:21976360-21979446:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.74853515625	2	569.747324	1137.4801	0.06927	3.9466E-05	2.9499	0.0016807	3.0192	0.0017202	569.7489230065535	69.839	0.93994	69.617	69.226	70.165	-0.22245					68	22	4	0	0	0	0.096521	5	8129	8084;8092;8104;8116;8129		111.65	25.927	1	7944600			28692	12869	19771	19812	33089;33090;33091;33092;33093	33093					-0.08314486425069845
ISWSECWEV	9	Unmodified	_ISWSECWEV_					0	0	0		ENST00000367606.7_1_14:21976360-21979446:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.747324	1137.4801	-0.73301	-0.00041763	3.2473	0.0018501	2.5143	0.0014325	569.7490925101605	69.486	0.85877	69.486	69.056	69.915	0	-0.093824	0.00028811	NaN	115.46	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811480			28693	12869	19771	19812							-0.08314486425069845
ISWSECWEV	9	Unmodified	_ISWSECWEV_					0	0	0		ENST00000367606.7_1_14:21976360-21979446:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.747324	1137.4801	0.51764	0.00029492	1.9877	0.0011325	2.5054	0.0014274	569.7483976902093	69.811	0.98678	69.518	68.933	69.92	-0.29291	-0.061872	-0.0011472	NaN	115.46	57	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718300			28694	12869	19771	19812							-0.08314486425069845
ISWSECWEV	9	Unmodified	_ISWSECWEV_					0	0	0		ENST00000367606.7_1_14:21976360-21979446:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	ENST00000367606.7_1_14:21976360-21979446:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.747324	1137.4801	-1.0776	-0.00061394	3.6433	0.0020758	2.5657	0.0014618	569.7494184450939	69.557	0.63439	69.572	69.28	69.914	0.015129	-0.0073088	0.00073934	NaN	115.46	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	699340			28695	12869	19771	19812							-0.08314486425069845
ISYCGINL	8	Unmodified	_ISYCGINL_					0	0	0			REV__ABCA12|p.G1651S|1|0.25|ENSG00000144452|chr2:214978830-214978830|C/T|missense_variant	REV__ABCA12|p.G1651S|1|0.25|ENSG00000144452|chr2:214978830-214978830|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2655944824219	2	441.723121	881.431689	-0.65616	-0.00028984	2.5884	0.0011434	1.9323	0.00085352	441.723997023973	39.543	0.14225	39.566	39.455	39.598	0.023727					5	3	2	0	0	0	0.027866	1	3349	3349		31.955	1.4512	1	28371	+		28696	19044	19772	19813	33094	33094					-0.013769352743111085
ISYINIIMP	9	Unmodified	_ISYINIIMP_					0	0	0		ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7994995117188	2	532.296453	1062.57835	-0.4973	-0.00026471	-2.8597	-0.0015222	-3.357	-0.0017869	532.2947155372891	101.1	0.86356	101.11	100.79	101.65	0.0090256					50	19	4	0	0	0	0.024374	1	12970	12970		58.782	21.623	1	1075800			28697	4283	19773	19814	33095	33095					0.049567418908054606
ISYKLHLKL	9	Unmodified	_ISYKLHLKL_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.8507080078125	2	557.852784	1113.69102	-0.8201	-0.0004575	-2.8692	-0.0016006	-3.6893	-0.0020581	557.8510290409305	26.764	0.62298	26.6	26.344	26.967	-0.16331					41	14	4	0	0	0	0.35646	1	1393	1393		68.787	2.3575	1	868620			28698	8233	19774	19815	33096	33096					0.13871758679124468
ISYLIGLSN	9	Unmodified	_ISYLIGLSN_					0	0	0		ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7614440917969	2	490.276575	978.538597	0.43812	0.0002148	0.27588	0.00013526	0.71399	0.00035005	490.27638016942245	87.222	0.63182	87.243	86.886	87.518	0.021263					28	14	3	0	0	0	0.024405	1	10850	10850		27.882	0	1	100720			28699	6574	19775	19816	33097	33097					0.04846938211721863
ISYNDMFEML	10	Unmodified	_ISYNDMFEML_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.5209045410156	3	421.519242	1261.5359	0.10343	4.3597E-05	3.1896	0.0013445	3.293	0.0013881	421.5205006849407	31.767	1.1019	31.582	31.283	32.385	-0.18503					75	25	5	0	0	0	1.1295	1	2140	2140		26.063	0.17167	1	1412100			28700	6028	19776	19817	33098	33098					-0.08441021299768181
ISYRKFTS	8	Unmodified	_ISYRKFTS_					0	0	0		EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant;ENSG00000142627|ENST00000358432|EPHA2	EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.3230285644531	2	501.274367	1000.53418	-0.072019	-3.6101E-05	2.6725	0.0013397	2.6005	0.0013036	501.2755026862969	73.726	0.55296	73.449	73.092	73.645	-0.2769					26	13	2	0	0	0	0.027866	1	8684	8684		31.955	0	1	375910			28701	5579	19777	19818	33099	33099					0.03393473788821666
ISYTIQNNP	9	Unmodified	_ISYTIQNNP_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2872924804688	2	525.266739	1048.51892	-1.0876	-0.00057129	2.3769	0.0012485	1.2893	0.00067725	525.2676866555863	28.411	0.64408	28.166	27.677	28.322	-0.24524					21	15	2	0	0	0	0.023635	1	1586	1586		66.429	4.3219	1	106930	+		28702	21681	19778	19819	33100	33100					-0.00339437799038933
ISYVVYYV	8	Unmodified	_ISYVVYYV_					0	0	0		ENSG00000179796|ENST00000396641|LRRC3B	ENSG00000179796|ENST00000396641|LRRC3B	ENSG00000179796|ENST00000396641|LRRC3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.294677734375	2	503.268219	1004.52188	-0.2002	-0.00010076	-1.2367	-0.00062238	-1.4369	-0.00072313	503.76905566704596	101.84	1.2507	101.84	101.34	102.59	0.0073471					35	28	2	0	0	0	0.027866	1	13060	13060		21.702	0	1	94946			28703	8923	19779	19820	33101	33101					0.019804373257670704
ISYVWPRA	8	Unmodified	_ISYVWPRA_					0	0	0			REV__ENST00000371614.1_1_1:52498182-52498248:-|nuORF	REV__ENST00000371614.1_1_1:52498182-52498248:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7956848144531	2	496.271627	990.528701	-0.21862	-0.0001085	-0.76316	-0.00037874	-0.98178	-0.00048723	496.2709209434651	38.83	0.88683	38.604	38.246	39.132	-0.2257					62	23	4	0	0	0	0.027866	1	3238	3238		42.474	19.432	1	3782000	+		28704	31170	19780	19821	33102	33102					0.03305794996992972
ITAIIDLVK	9	Unmodified	_ITAIIDLVK_					0	0	0			REV__ENSG00000049860|ENST00000261416|HEXB	REV__ENSG00000049860|ENST00000261416|HEXB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.76318359375	2	493.318243	984.621933	-0.60085	-0.00029641	0.65928	0.00032524	0.05843	2.8825E-05	493.3184598256946	74.477	0.79131	74.487	74.18	74.972	0.0096512					28	18	2	0	0	0	0.02435	1	9015	9015		51.335	0	1	386210	+		28705	20151	19781	19822	33103	33103					0.12900674659567812
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant;TNR|p.F438Lfs*18|1|0.52|ENSG00000116147|chr1:175393825-175393826|-/A|frameshift_variant	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.29278564453125	2	477.292559	952.570566	0.84322	0.00040246	-1.2745	-0.00060832	-0.4313	-0.00020586	477.2918433041814	46.714	1.1544	46.714	46.343	47.497	0					97	31	4	0	0	0	0.16468	2	4678	4629;4678		96.19	2.995	1	5618500			28706	3525	19782	19823	33104;33105	33105					0.09238350685518526
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant;TNR|p.F438Lfs*18|1|0.52|ENSG00000116147|chr1:175393825-175393826|-/A|frameshift_variant	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.29248046875	2	477.292559	952.570566	0.19868	9.483E-05	-0.56914	-0.00027165	-0.37046	-0.00017682	477.29218092305064	46.84	1.2995	46.687	46.242	47.542	-0.15301					111	35	5	0	0	0	0.12602	2	4664	4633;4664		104.75	22.506	1	5000500			28707	3525	19782	19823	33106;33107	33107					0.09238350685518526
ITALDTYMY	9	Unmodified	_ITALDTYMY_					0	0	0			REV__ENSG00000116039|ENST00000234396|ATP6V1B1;REV__ENSG00000147416|ENST00000276390|ATP6V1B2	REV__ENSG00000116039|ENST00000234396|ATP6V1B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.282958984375	2	545.759901	1089.50525	0.26012	0.00014196	0.86452	0.00047182	1.1246	0.00061378	545.7605864857344	51.071	0.11029	50.89	50.797	50.908	-0.18071					4	2	2	0	0	0	0.024263	1	5223	5223		71.296	28.821	1	200790	+		28708	22254;24551	19783	19824	33108	33108					-0.03592431622496406
ITANFLIVGTA	11	Unmodified	_ITANFLIVGTA_					0	0	0			REV__ENST00000319074.5_1_14:23564726-23566941:+|nuORF	REV__ENST00000319074.5_1_14:23564726-23566941:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.3240966796875	2	560.324057	1118.63356	-0.73782	-0.00041342	0.90081	0.00050474	0.16298	9.1324E-05	560.825961386748	83.643	1.452	83.553	82.958	84.41	-0.090454					51	33	2	0	0	0	0.02475	1	10380	10380		16.007	0	1	996850	+		28709	30318	19784	19825	33109	33109					0.07898871682914432
ITAPANPVIT	10	Unmodified	_ITAPANPVIT_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7898864746094	2	498.78985	995.565146	-0.37378	-0.00018644	0.75728	0.00037772	0.38349	0.00019128	498.7899686984484	73.265	0.81811	73.265	72.698	73.516	0					54	20	4	0	0	0	0.66532	1	8952	8952		69.628	6.3214	1	3616000	+		28710	25862	19785	19826	33110	33110					0.06718627103043673
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.29254150390625	2	477.292559	952.570566	0.84322	0.00040246	-1.2745	-0.00060832	-0.4313	-0.00020586	477.2918433041814	46.714	1.1544	46.714	46.343	47.497	0					97	31	4	0	0	0	0.1158	2	4639	4639;4651		107.01	42.8	1	5618500			28711	2061	19786	19827	33111;33112	33111					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.29229736328125	2	477.292559	952.570566	0.19868	9.483E-05	-0.56914	-0.00027165	-0.37046	-0.00017682	477.29218092305064	46.84	1.2995	46.687	46.242	47.542	-0.15301					111	35	5	0	0	0	0.2101	3	4645	4623;4645;4677		87.696	13.441	1	5000500			28712	2061	19786	19827	33113;33114;33115	33114					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.29327392578125	2	477.292559	952.570566	-0.066021	-3.1511E-05	-0.22354	-0.00010669	-0.28956	-0.00013821	477.2923561435963	46.642	1.3333	46.693	46.274	47.607	0.051395					99	37	4	0	0	0	0.077175	5	4616	4559;4571;4583;4602;4616		118.74	28.373	1	5276800			28713	2061	19786	19827	33116;33117;33118;33119;33120	33120					0.09238350685518526
ITAPVTMILS	10	Unmodified	_ITAPVTMILS_					0	0	0		nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-4|GABBR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2589111328125	2	523.301736	1044.58892	-1.4222	-0.00074425	4.3692	0.0022864	2.947	0.0015422	523.3039690464278	24.693	0.53778	24.646	24.353	24.891	-0.047148					21	11	3	0	0	0	0.03519	1	1095	1095		39.253	5.7372	1	143020			28714	18665;10368	19787	19828	33121	33121					0.06840724545213561
ITARLLLFS	9	Unmodified	_ITARLLLFS_					0	0	0			REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|10|2|sense	REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|10|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3053588867188	2	517.32386	1032.63317	-0.23261	-0.00012033	2.5675	0.0013282	2.3349	0.0012079	517.324800498836	60.212	0.52744	59.964	59.61	60.137	-0.24842					18	13	2	0	0	0	0.024541	1	6701	6701		16.473	0	1	328090	+		28715	36366	19788	19829	33122	33122					0.11815496753706611
ITASKAITALG	11	Unmodified	_ITASKAITALG_					0	0	0			REV__ENSG00000022355|ENST00000393943|GABRA1	REV__ENSG00000022355|ENST00000393943|GABRA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3201293945312	2	523.316232	1044.61791	0.20123	0.00010531	-0.37446	-0.00019596	-0.17322	-9.0651E-05	523.3158833450477	18.329	0.74305	18.125	17.767	18.51	-0.20371					39	14	5	0	0	0	1.0521	1	280	280		24.519	0	1	309170	+		28716	20001	19789	19830	33123	33123					0.09738585165837321
ITASKITQDS	10	Unmodified	_ITASKITQDS_					0	0	0			REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2862548828125	2	532.285128	1062.5557	-0.21462	-0.00011424	3.8666	0.0020581	3.652	0.0019439	532.2869380245468	71.842	0.97474	71.58	71.241	72.216	-0.26199					49	22	3	0	0	0	0.59716	1	8397	8397		77.318	5.4401	1	2124700	+		28717	27344	19790	19831	33124	33124					0.02692814026841006
ITASRPVSL	9	Unmodified	_ITASRPVSL_					0	0	0			REV__ENST00000526586.6_1_16:2012301-2012493:-|nuORF	REV__ENST00000526586.6_1_16:2012301-2012493:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7718505859375	2	472.282192	942.549831	0.37959	0.00017928	-1.1338	-0.00053549	-0.75423	-0.00035621	472.2816050261884	46.882	0.71024	46.729	46.342	47.052	-0.153					53	18	5	0	0	0	0.024283	1	4622	4622		40.058	0	1	1389200	+		28718	34450	19791	19832	33125	33125					0.0762576030585933
ITASRPVSL	9	Unmodified	_ITASRPVSL_					0	0	0			REV__ENST00000526586.6_1_16:2012301-2012493:-|nuORF	REV__ENST00000526586.6_1_16:2012301-2012493:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7721862792969	2	472.282192	942.549831	0.20886	9.8642E-05	-1.1757	-0.00055525	-0.96681	-0.00045661	472.28152169460697	46.728	0.587	46.779	46.474	47.061	0.051399					43	15	4	0	0	0	0.024344	1	4586	4586		37.812	0	1	1600700	+		28719	34450	19791	19832	33126	33126					0.0762576030585933
ITAVIRPT	8	Unmodified	_ITAVIRPT_					0	0	0			REV__chr2:113062726-113064052|321|17.97|0.32|5.81|+|2|TE_info:MLT1C,MLT1C_dup1974,ERVL-MaLR,LTR,acceptor,+,113064052,113064333|IL36RN,None|2	REV__chr2:113062726-113064052|321|17.97|0.32|5.81|+|2|TE_info:MLT1C,MLT1C_dup1974,ERVL-MaLR,LTR,acceptor,+,113064052,113064333|IL36RN,None|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7806701660156	2	435.774003	869.533452	-0.84732	-0.00036924	-2.8533	-0.0012434	-3.7006	-0.0016126	435.7742317044403	44.21	0.31406	44.105	43.925	44.239	-0.10468					14	8	2	0	0	0	0.027866	1	4093	4093		25.574	7.2496	1	120350	+		28720	19401	19792	19833	33127	33127					0.09346679139753178
ITCILKLNP	9	Unmodified	_ITCILKLNP_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.764404296875	2	507.804445	1013.59434	-0.69245	-0.00035163	3.1391	0.001594	2.4466	0.0012424	507.8059340680043	39.03	0.57048	38.931	38.629	39.199	-0.098755					24	15	2	0	0	0	0.024294	1	3329	3329		37.159	0	1	335050	+		28721	20698	19793	19834	33128	33128					0.08808448127672364
ITCPAILLN	9	Unmodified	_ITCPAILLN_					0	0	0			REV__ENSG00000000938|ENST00000374005|FGR	REV__ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27734375	2	479.275521	956.536489	-0.16077	-7.7054E-05	3.8323	0.0018367	3.6715	0.0017597	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	0.72875	1	9728	9728		44.117	1.7207	1	2028900	+		28722	19753	19794	19835	33129	33129					0.0564818620226788
ITCPYWAH	8	Unmodified	_ITCPYWAH_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2969665527344	2	495.728738	989.442923	-0.091959	-4.5587E-05	2.8178	0.0013969	2.7258	0.0013513	495.72992540623153	55.617	1.034	55.461	54.888	55.922	-0.15602					46	28	2	0	0	0	0.027866	1	6041	6041		29.842	12.477	1	225400	+		28723	27506	19795	19836	33130	33130					-0.052221131801729825
ITCPYWAH	8	Unmodified	_ITCPYWAH_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.728738	989.442923	1.0228	0.00050705	1.6348	0.0008104	2.6576	0.0013175	495.72941588693766	55.542	0.84998	55.542	55.149	55.999	0	0.040457	-0.000641	NaN	29.842	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160720	+		28724	27506	19795	19836							-0.052221131801729825
ITCVLFNQY	9	Unmodified	_ITCVLFNQY_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2586059570312	2	550.775885	1099.53722	-0.014495	-7.9834E-06	2.7217	0.001499	2.7072	0.0014911	551.2800651256586	63.994	0.30937	63.735	63.565	63.875	-0.25824					11	7	2	0	0	0	0.024323	1	7241	7241		44.117	0	1	91418			28725	18400	19796	19837	33131	33131					-0.008570191487024204
ITDAYLDQY	9	Unmodified	_ITDAYLDQY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.25830078125	2	551.258579	1100.50261	-0.20395	-0.00011243	-0.4185	-0.0002307	-0.62246	-0.00034313	551.2583808454992	63.759	1.0902	63.532	63.251	64.341	-0.22773					87	27	5	0	0	0	0.15366	3	7233	7210;7233;7246		98.629	21.855	1	5604800			28726	8454	19797	19838	33132;33133;33134	33133					-0.043625637557852315
ITDAYLDQY	9	Unmodified	_ITDAYLDQY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.2584838867188	2	551.258579	1100.50261	-0.093111	-5.1328E-05	-0.59514	-0.00032808	-0.68825	-0.0003794	551.2583486163642	63.777	0.77497	63.585	63.263	64.038	-0.19243					75	19	5	0	0	0	0.1158	3	7236	7224;7236;7249		107.01	27.028	1	6179300			28727	8454	19797	19838	33135;33136;33137	33136					-0.043625637557852315
ITDAYLDQY	9	Unmodified	_ITDAYLDQY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.2586059570312	2	551.258579	1100.50261	0.082786	4.5636E-05	-0.75641	-0.00041698	-0.67362	-0.00037134	551.2582204753002	63.879	0.79771	63.621	63.352	64.15	-0.25824					75	20	5	0	0	0	0.1158	2	7228	7217;7228		107.01	4.2342	1	6080000			28728	8454	19797	19838	33138;33139	33139					-0.043625637557852315
ITDDLHFYV	9	Unmodified	_ITDDLHFYV_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.7777709960938	2	561.776939	1121.53933	-0.10366	-5.8231E-05	0.14922	8.383E-05	0.045568	2.5599E-05	561.7767603942576	69.704	0.56976	69.704	69.423	69.993	0					43	13	4	0	0	0	0.25032	1	8425	8425		82.305	28.954	1	2009400			28729	9965	19798	19839	33140	33140					-0.016582671392370685
ITDDLHFYV	9	Unmodified	_ITDDLHFYV_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.7776489257812	2	561.776939	1121.53933	0.424	0.0002382	-0.44055	-0.00024749	-0.016541	-9.2923E-06	561.7764610799694	70.063	0.65143	69.77	69.386	70.038	-0.29292					46	15	4	0	0	0	0.17455	2	8433	8421;8433		94.006	33.034	1	2126000			28730	9965	19798	19839	33141;33142	33142					-0.016582671392370685
ITDDPAAHL	9	Unmodified	_ITDDPAAHL_					0	0	0		ENST00000223129.8_1_7:7680585-7680732:-|nuORF	ENST00000223129.8_1_7:7680585-7680732:-|nuORF	ENST00000223129.8_1_7:7680585-7680732:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7624206542969	2	476.740357	951.46616	2.4403	0.0011634	0.56294	0.00026838	3.0033	0.0014318	476.741122390465	63.901	0.32561	63.901	63.736	64.062	0					11	8	2	0	0	0	0.024487	1	7501	7501		17.365	5.1581	1	126140			28731	11196	19799	19840	33143	33143					-0.011513958618593279
ITDEQRQYY	9	Unmodified	_ITDEQRQYY_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.285888671875	2	608.28566	1214.55677	-1.0285	-0.00062562	0.87887	0.0005346	-0.14964	-9.1022E-05	608.286050750408	37.686	0.74799	37.494	37.116	37.864	-0.19139					55	19	5	0	0	0	0.016758	1	3042	3042		153.04	67.875	1	2307200			28732	4911	19800	19841	33144	33144					-0.04192971604243212
ITDEQRQYY	9	Unmodified	_ITDEQRQYY_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.2857666015625	2	608.28566	1214.55677	-1.3116	-0.00079781	1.2838	0.00078092	-0.027766	-1.6889E-05	608.2863688063005	37.629	0.78595	37.409	37.114	37.9	-0.2195					54	20	4	0	0	0	0.014918	1	3037	3037		162.25	82.54	1	2285200			28733	4911	19800	19841	33145	33145					-0.04192971604243212
ITDEQRQYY	9	Unmodified	_ITDEQRQYY_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.2857055664062	2	608.28566	1214.55677	-1.3165	-0.00080082	1.2162	0.0007398	-0.10032	-6.1021E-05	608.2862928720286	37.665	0.75007	37.446	37.144	37.894	-0.21849					51	19	4	0	0	0	0.03201	1	3025	3025		139.97	65.715	1	2227800			28734	4911	19800	19841	33146	33146					-0.04192971604243212
ITDEVNVLP	9	Unmodified	_ITDEVNVLP_					0	0	0		ENST00000563451.1_1_15:42804044-42804128:+|nuORF	ENST00000563451.1_1_15:42804044-42804128:+|nuORF	ENST00000563451.1_1_15:42804044-42804128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7677917480469	2	500.27149	998.528426	-0.72105	-0.00036072	-3.6228	-0.0018124	-4.3438	-0.0021731	500.770232839716	39.219	1.6566	39.054	38.659	40.316	-0.16459					129	44	6	0	0	0	0.33245	1	3276	3276		71.296	7.0884	1	26558000			28735	16868	19801	19842	33147	33147					0.029103304864634083
ITDFLDNGY	9	Unmodified	_ITDFLDNGY_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2454223632812	2	529.245472	1056.47639	-1.0722	-0.00056747	-0.18945	-0.00010027	-1.2617	-0.00066773	529.2452501666068	62.552	0.56047	62.368	62.035	62.596	-0.18386					39	18	3	0	0	0	0.4752	1	7045	7045		60.972	4.2509	1	3347200			28736	6707	19802	19843	33148	33148					-0.049588329272637566
ITDFLDNGY	9	Unmodified	_ITDFLDNGY_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2437744140625	2	529.245472	1056.47639	-0.30385	-0.00016081	-0.52614	-0.00027846	-0.82999	-0.00043927	529.2450700553412	62.762	0.61456	62.504	62.135	62.75	-0.25824					34	18	2	0	0	0	0.31037	1	7053	7053		74.255	5.4682	1	2532200			28737	6707	19802	19843	33149	33149					-0.049588329272637566
ITDGVHLEY	9	Unmodified	_ITDGVHLEY_					0	0	0			REV__ENSG00000120337|ENST00000404377|TNFSF18	REV__ENSG00000120337|ENST00000404377|TNFSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.7623901367188	2	523.761289	1045.50803	0.88702	0.00046459	-1.6098	-0.00084314	-0.72276	-0.00037856	523.760471526935	59.826	1.531	59.629	59.173	60.704	-0.19742					129	38	5	0	0	0	0.55828	1	6597	6597		55.504	2.1528	1	38611000	+		28738	22529	19803	19844	33150	33150					-0.01290840173351171
ITDGVHLEY	9	Unmodified	_ITDGVHLEY_					0	0	0			REV__ENSG00000120337|ENST00000404377|TNFSF18	REV__ENSG00000120337|ENST00000404377|TNFSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.761474609375	2	523.761289	1045.50803	0.53787	0.00028171	-1.2292	-0.00064378	-0.69129	-0.00036207	523.7606485844576	59.749	1.3952	59.573	59.24	60.635	-0.1761					103	35	3	0	0	0	0.31247	1	6685	6685		73.975	18.471	1	38837000	+		28739	22529	19803	19844	33151	33151					-0.01290840173351171
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.76336669921875	2	509.763832	1017.51311	-0.5593	-0.00028511	-0.26545	-0.00013532	-0.82475	-0.00042043	509.7637702657127	49.108	1.5791	49.007	48.358	49.938	-0.1008					162	41	7	0	0	0	0.06122	5	4906	4894;4906;4918;4930;4942		124.59	30.588	1	49106000			28740	4572	19804	19845	33152;33153;33154;33155;33156	33153					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.763916015625	2	509.763832	1017.51311	-0.24962	-0.00012725	-0.68135	-0.00034733	-0.93097	-0.00047458	509.76355391283346	49.38	1.5658	49.101	48.465	50.031	-0.27977					133	41	6	0	0	0	0.15889	5	4929	4929;4941;4953;4965;4977		97.473	24.494	1	50083000			28741	4572	19804	19845	33157;33158;33159;33160;33161	33157					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.763671875	2	509.763832	1017.51311	-0.14227	-7.2525E-05	-0.72886	-0.00037155	-0.87113	-0.00044407	509.7635179978519	49.227	1.5687	49.045	48.408	49.977	-0.18206					140	41	6	0	0	0	0.08613	4	4947	4896;4935;4947;4960		115.46	44.163	1	48020000			28742	4572	19804	19845	33162;33163;33164;33165	33164					0.005054636892964481
ITDHGSLIY	9	Unmodified	_ITDHGSLIY_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.763832	1017.51311	-0.25109	-0.000128	5.4177	0.0027618	5.1666	0.0026338	510.26952719885435	49.409	0.22027	49.256	49.146	49.366	-0.15277	0.15421	0.0059877	NaN	124.59	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117680			28743	4572	19804	19845							0.005054636892964481
ITDHLDTQY	9	Unmodified	_ITDHLDTQY_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.2616577148438	2	553.261653	1104.50875	-0.5528	-0.00030584	0.25428	0.00014068	-0.29852	-0.00016516	553.2616432470123	44.99	0.62307	44.737	44.468	45.091	-0.25252					39	15	5	0	0	0	0.11092	1	4219	4219		108.09	25.782	1	1979400			28744	1536	19805	19846	33166	33166					-0.03932045524265959
ITDHLDTQY	9	Unmodified	_ITDHLDTQY_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.2611694335938	2	553.261653	1104.50875	-0.72302	-0.00040002	0.77592	0.00042929	0.052906	2.9271E-05	553.2617478635359	44.947	0.74305	44.736	44.474	45.217	-0.21109					43	19	4	0	0	0	0.32811	1	4213	4213		71.877	11.584	1	1947400			28745	1536	19805	19846	33167	33167					-0.03932045524265959
ITDKAREF	8	Unmodified	_ITDKAREF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2635498046875	2	490.263999	978.513445	-1.0538	-0.00051664	1.1318	0.0005549	0.078049	3.8265E-05	490.26397060331095	28.159	0.7275	27.914	27.635	28.363	-0.24524					31	17	4	0	0	0	0.44952	1	1621	1621		90.37	10.919	1	1366300			28746	3459	19806	19847	33168	33168					0.023328834091330464
ITDKAREF	8	Unmodified	_ITDKAREF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2639465332031	2	490.263999	978.513445	-0.67697	-0.00033189	0.49867	0.00024448	-0.1783	-8.7413E-05	490.26385451414643	27.947	0.80814	27.779	27.487	28.295	-0.16816					30	19	3	0	0	0	0.41021	1	1591	1591		95.815	27.028	1	1260700			28747	3459	19806	19847	33169	33169					0.023328834091330464
ITDKAREF	8	Unmodified	_ITDKAREF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2635803222656	2	490.263999	978.513445	-0.12227	-5.9942E-05	-0.36423	-0.00017857	-0.4865	-0.00023851	490.2634162021998	28.066	0.75047	27.914	27.61	28.36	-0.15195					33	18	4	0	0	0	0.36844	2	1579	1579;1590		101.6	16.241	1	1438200			28748	3459	19806	19847	33170;33171	33170					0.023328834091330464
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.768798828125	2	512.769114	1023.52368	-1.2276	-0.00062948	-0.80971	-0.00041519	-2.0373	-0.0010447	512.7686903007743	38.908	1.3723	38.744	38.396	39.768	-0.16458					106	36	5	0	0	0	0.025498	6	3263	3229;3240;3251;3263;3275;3289		145.16	51.96	1	39293000			28749	7091	19807	19848	33172;33173;33174;33175;33176;33177	33175					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7686157226562	2	512.769114	1023.52368	-0.6888	-0.00035319	-1.1163	-0.00057241	-1.8051	-0.0009256	512.7685174238023	38.998	1.7785	38.775	38.374	40.152	-0.22311					138	46	5	0	0	0	0.071379	8	3298	3229;3238;3250;3262;3274;3286;3298;3313		120.87	48.204	1	35718000			28750	7091	19807	19848	33178;33179;33180;33181;33182;33183;33184;33185	33184					0.012854463436951846
ITDKNSLAY	9	Unmodified	_ITDKNSLAY_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7683715820312	2	512.769114	1023.52368	-0.11387	-5.839E-05	-1.8055	-0.0009258	-1.9194	-0.00098419	512.768176638213	38.974	1.8756	38.748	38.402	40.277	-0.2257					139	49	4	0	0	0	0.071379	7	3244	3221;3232;3244;3256;3268;3280;3294		120.87	54.439	1	37333000			28751	7091	19807	19848	33186;33187;33188;33189;33190;33191;33192	33188					0.012854463436951846
ITDKPYISAM	10	Oxidation (M)	_ITDKPYISAM(Oxidation (M))_		ITDKPYISAM(1)		ITDKPYISAM(91)	0	0	1			REV__ENST00000265735.11_1_7:94257574-94257607:-|nuORF	REV__ENST00000265735.11_1_7:94257574-94257607:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.790283203125	2	577.791732	1153.56891	-0.067364	-3.8922E-05	-3.1397	-0.0018141	-3.2071	-0.001853	577.7898826865983	78.301	1.8151	78.07	77.458	79.273	-0.23141					100	42	4	0	0	0	0.47897	1	9347	9347		90.601	10.146	1	3615200	+		28752	29746	19808	19849	33193	33193		861			-0.0017307118541793898
ITDKPYISAM	10	Oxidation (M)	_ITDKPYISAM(Oxidation (M))_		ITDKPYISAM(1)		ITDKPYISAM(120)	0	0	1			REV__ENST00000265735.11_1_7:94257574-94257607:-|nuORF	REV__ENST00000265735.11_1_7:94257574-94257607:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.7902221679688	2	577.791732	1153.56891	-0.33932	-0.00019606	-2.9638	-0.0017125	-3.3031	-0.0019085	577.7900158203861	78.21	1.53	78.054	77.49	79.02	-0.15591					99	35	5	0	0	0	0.2261	1	9307	9307		117.81	21.996	1	3450300	+		28753	29746	19808	19849	33194	33194		861			-0.0017307118541793898
ITDLKQPVL	9	Unmodified	_ITDLKQPVL_					0	0	0		nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2943725585938	2	513.813325	1025.6121	0.064326	3.3052E-05	2.3744	0.00122	2.4388	0.0012531	513.813181327212	86.835	0.4634	86.79	86.51	86.973	-0.045105					16	10	2	0	0	0	0.024323	1	10854	10854		53.351	5.6941	1	49302			28754	4090	19809	19850	33195	33195					0.10031486654179389
ITDLVKRD	8	Unmodified	_ITDLVKRD_					0	0	0			REV__nc|ENSG00000173193|Q460N5-1|PARP14	REV__nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7761535644531	2	480.279649	958.544745	-0.9195	-0.00044162	0.014945	7.1776E-06	-0.90456	-0.00043444	480.27985736549294	79.871	0.46196	79.698	79.526	79.987	-0.17225					16	10	2	0	0	0	0.027866	1	9883	9883		40.573	8.6178	1	159000	+		28755	26750	19810	19851	33196	33196					0.06381456443239131
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7142028808594	2	506.714536	1011.41452	-0.002596	-1.3154E-06	-1.3816	-0.00070008	-1.3842	-0.0007014	506.7141398965285	34.347	4.2309	34.123	33.6	37.831	-0.22412					266	110	6	0	0	0	0.013887	12	2554	2483;2494;2506;2518;2530;2542;2554;2566;2579;2592;2604;2616		215.39	123.2	1	153850000			28756	2053	19811	19852	33197;33198;33199;33200;33201;33202;33203;33204;33205;33206;33207;33208	33203					-0.09073184346425478
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.7142028808594	2	506.714536	1011.41452	-0.36547	-0.00018519	-1.0222	-0.00051796	-1.3877	-0.00070315	506.7142952556886	34.119	4.3404	33.912	33.435	37.775	-0.20696					269	112	6	0	0	0	0.013065	13	2556	2445;2457;2469;2481;2493;2505;2517;2529;2542;2556;2575;2599;2610		200.16	107.97	1	139880000			28757	2053	19811	19852	33209;33210;33211;33212;33213;33214;33215;33216;33217;33218;33219;33220;33221	33218					-0.09073184346425478
ITDQNSDGY	9	Unmodified	_ITDQNSDGY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.I399Hfs*32|1|0.23|ENSG00000096696|chr6:7567832-7567833|-/C|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7141418457031	2	506.714536	1011.41452	-1.4234	-0.00072125	0.38403	0.00019459	-1.0394	-0.00052666	506.71477895294805	33.857	2.2131	33.681	33.352	35.565	-0.17557					163	56	5	0	0	0	0.010583	8	2439	2406;2415;2427;2439;2451;2464;2477;2509		231.3	120.96	1	42217000			28758	2053	19811	19852	33222;33223;33224;33225;33226;33227;33228;33229	33225					-0.09073184346425478
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2825927734375	2	545.282389	1088.55022	0.24553	0.00013388	-1.288	-0.00070234	-1.0425	-0.00056845	545.2818975601955	50.878	2.2684	50.767	50.379	52.647	-0.11163					196	59	6	0	0	0	0.00021467	12	5230	5170;5182;5194;5206;5218;5230;5242;5254;5267;5279;5292;5305		193.98	111.67	1	187420000			28759	8027	19812	19853	33230;33231;33232;33233;33234;33235;33236;33237;33238;33239;33240;33241	33235					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2824096679688	2	545.282389	1088.55022	0.0055248	3.0126E-06	-1.1434	-0.00062348	-1.1379	-0.00062047	545.2820201632269	51.112	2.3839	50.836	50.48	52.864	-0.27643					193	62	6	0	0	0	0.00021467	12	5253	5194;5205;5217;5229;5241;5253;5265;5277;5289;5301;5315;5328		193.98	92.348	1	186790000			28760	8027	19812	19853	33242;33243;33244;33245;33246;33247;33248;33249;33250;33251;33252;33253	33247					0.009491352350551097
ITDSAGHILY	10	Unmodified	_ITDSAGHILY_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2831420898438	2	545.282389	1088.55022	0.14666	7.9969E-05	-1.3078	-0.00071312	-1.1611	-0.00063315	545.2819178204759	50.959	2.0883	50.778	50.39	52.479	-0.18071					170	54	5	0	0	0	0.00021467	12	5247	5175;5187;5199;5211;5223;5235;5247;5259;5271;5283;5296;5310		193.98	99.972	1	190680000			28761	8027	19812	19853	33254;33255;33256;33257;33258;33259;33260;33261;33262;33263;33264;33265	33260					0.009491352350551097
ITDTAYRSM	9	Unmodified	_ITDTAYRSM_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7933959960938	2	529.252774	1056.491	0.036564	1.9352E-05	0.8076	0.00042742	0.84416	0.00044678	529.2528120580536	37.042	0.81262	36.849	36.537	37.35	-0.193					33	20	2	0	0	0	0.024319	1	2972	2972		47.657	0	1	106050			28762	2185;18010	19813	19854	33266	33266					-0.034990840507816756
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant;ENSG00000161904|ENST00000293760|LEMD2	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.26953125	2	542.269478	1082.5244	-0.30919	-0.00016767	0.36892	0.00020006	0.05973	3.239E-05	542.2695381615307	37.522	0.61346	37.329	36.966	37.58	-0.193					35	15	3	0	0	0	0.016542	2	3014	3014;3026		154.12	40.707	1	1733600			28763	6899	19814	19855	33267;33268	33267					-0.013557590072423409
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant;ENSG00000161904|ENST00000293760|LEMD2	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.2691040039062	2	542.269478	1082.5244	-1.2938	-0.0007016	1.316	0.00071364	0.022203	1.204E-05	542.2700783033962	37.517	0.54202	37.297	37.037	37.579	-0.2195					40	13	4	0	0	0	0.030064	2	3012	3012;3024		141.52	53.766	1	1680400			28764	6899	19814	19855	33269;33270	33269					-0.013557590072423409
ITDTTRDVY	9	Unmodified	_ITDTTRDVY_					0	0	0		LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant;ENSG00000161904|ENST00000293760|LEMD2	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.26953125	2	542.269478	1082.5244	-1.4486	-0.00078553	1.3141	0.00071261	-0.13446	-7.2916E-05	542.2701011415609	37.473	0.65372	37.264	37.037	37.691	-0.2092					41	16	4	0	0	0	0.094442	2	3005	2994;3005		112.41	32.698	1	1631200			28765	6899	19814	19855	33271;33272	33272					-0.013557590072423409
ITDVAKNVQ	9	Unmodified	_ITDVAKNVQ_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.289794921875	2	494.277106	986.53966	-0.439	-0.00021699	-0.4294	-0.00021224	-0.8684	-0.00042923	494.27720858961095	61.747	0.43524	61.818	61.59	62.026	0.071125					17	11	2	0	0	0	0.024457	1	7052	7052		29.15	0	1	232160	+		28766	21909	19815	19856	33273	33273					0.04585152580614249
ITDVPLPLI	9	Unmodified	_ITDVPLPLI_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.807373046875	2	490.804968	979.595384	-0.21035	-0.00010324	1.2757	0.00062614	1.0654	0.0005229	490.80581023863124	96.38	1.7799	96.38	95.991	97.771	0					101	40	5	0	0	0	0.80658	1	12268	12268		38.806	13.356	1	5427400	+		28767	27005	19816	19857	33274	33274					0.1047698576824132
ITDVPLPLI	9	Unmodified	_ITDVPLPLI_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.80584716796875	2	490.804968	979.595384	0.60343	0.00029617	0.15894	7.8009E-05	0.76237	0.00037418	490.80522986585635	96.276	1.5143	96.283	95.988	97.502	0.0065079					93	34	5	0	0	0	0.36105	1	12281	12281		68.485	2.6815	1	4546800	+		28768	27005	19816	19857	33275	33275					0.1047698576824132
ITDVPLPLI	9	Unmodified	_ITDVPLPLI_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.8062744140625	2	490.804968	979.595384	0.83764	0.00041112	-0.0083106	-4.0789E-06	0.82933	0.00040704	490.8051528571539	96.333	1.6486	96.335	96.035	97.684	0.0020752					98	37	5	0	0	0	0.26797	1	12241	12241		79.939	3.0926	1	5332500	+		28769	27005	19816	19857	33276	33276					0.1047698576824132
ITDYAQCLL	9	Unmodified	_ITDYAQCLL_					0	0	0			REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2625732421875	2	520.260068	1038.50558	-0.60914	-0.00031691	2.7721	0.0014422	2.163	0.0011253	520.2614212645597	73.508	0.34999	73.518	73.29	73.64	0.0096512					12	8	2	0	0	0	0.18915	1	8909	8909		90.777	24.347	1	977640	+		28770	32158	19817	19858	33277	33277					-0.012130119026551256
ITEAKRRIAR	10	Unmodified	_ITEAKRRIAR_					0	0	0			REV__ENSG00000125686|ENST00000300651|MED1	REV__ENSG00000125686|ENST00000300651|MED1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	607.3744506835938	2	607.37802	1212.74149	-1.0698	-0.00064978	0.16815	0.00010213	-0.90165	-0.00054764	607.3780230672708	97.661	0.82259	97.661	97.325	98.148	0					35	18	2	0	0	0	1.118	1	12450	12450		30.318	2.2362	1	366750	+		28771	22834	19818	19859	33278	33278					0.14362681056832116
ITEATQKTS	9	Unmodified	_ITEATQKTS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.27496337890625	2	489.758746	977.50294	-0.76856	-0.00037641	3.1839	0.0015593	2.4153	0.0011829	489.7599821595867	21.367	0.48968	21.367	21.048	21.537	0					15	9	2	0	0	0	0.024405	1	614	614		44.117	0	1	85108	+		28772	27387	19819	19860	33279	33279					0.01328855964061404
ITEATQKTS	9	Unmodified	_ITEATQKTS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.758746	977.50294	-0.33485	-0.00016399	2.4708	0.0012101	2.1359	0.0010461	489.7597002801682	21.286	0.39008	21.357	21.155	21.546	0.071487	0.030645	-7.0123E-05	NaN	44.117	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59345	+		28773	27387	19819	19860							0.01328855964061404
ITEDKTELY	9	Unmodified	_ITEDKTELY_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.2809448242188	2	556.279512	1110.54447	-0.16245	-9.037E-05	-0.38387	-0.00021354	-0.54632	-0.00030391	556.2792685299778	42.445	0.91858	42.322	41.998	42.917	-0.12299					84	23	5	0	0	0	0.013924	4	3806	3806;3815;3827;3839		204.62	61.518	1	8040900			28774	8414	19820	19861	33280;33281;33282;33283	33280					-0.006380080672670374
ITEDKTELY	9	Unmodified	_ITEDKTELY_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.2799072265625	2	556.279512	1110.54447	-0.3854	-0.00021439	-0.088428	-4.9191E-05	-0.47383	-0.00026358	556.2794016940951	42.599	1.1927	42.367	41.837	43.029	-0.23186					87	31	5	0	0	0	0.015032	4	3843	3823;3833;3843;3857		204.62	61.518	1	8024200			28775	8414	19820	19861	33284;33285;33286;33287	33286					-0.006380080672670374
ITEDKTELY	9	Unmodified	_ITEDKTELY_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.2798461914062	2	556.279512	1110.54447	-0.56193	-0.00031259	-0.16466	-9.1597E-05	-0.72659	-0.00040419	556.2793530776721	42.63	0.99159	42.404	42.07	43.061	-0.22597					84	25	5	0	0	0	0.013337	4	3856	3822;3832;3843;3856		209.84	52.631	1	8085700			28776	8414	19820	19861	33288;33289;33290;33291	33291					-0.006380080672670374
ITEDSPKHL	9	Unmodified	_ITEDSPKHL_					0	0	0			REV__ENST00000344651.4_1_12:121159001-121159205:+|nuORF	REV__ENST00000344651.4_1_12:121159001-121159205:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7898559570312	2	520.274564	1038.53457	-1.2257	-0.00063769	4.4879	0.002335	3.2623	0.0016973	520.2762388234139	79.719	0.92021	79.546	79.15	80.07	-0.17226					26	21	2	0	0	0	0.024319	1	9928	9928		56.721	21.103	1	86904	+		28777	30687	19821	19862	33292	33292					0.016848487179913718
ITEDSPKHL	9	Unmodified	_ITEDSPKHL_					0	0	0			REV__ENST00000344651.4_1_12:121159001-121159205:+|nuORF	REV__ENST00000344651.4_1_12:121159001-121159205:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.274564	1038.53457	-0.73978	-0.00038489	3.7634	0.001958	3.0237	0.0015731	520.2761280593573	79.578	0.62678	79.578	79.243	79.87	0	0.016066	-0.00026271	NaN	56.721	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74095	+		28778	30687	19821	19862							0.016848487179913718
ITEDVSQSCEQ	11	Unmodified	_ITEDVSQSCEQ_					0	0	0			REV__nc|ENSG00000100479|P56282-2|POLE2	REV__nc|ENSG00000100479|P56282-2|POLE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2896423339844	3	413.511692	1237.51325	-0.022167	-9.1662E-06	1.0947	0.00045266	1.0725	0.00044349	413.51217034454197	34.508	0.39278	34.284	34.106	34.499	-0.22412					21	9	3	0	0	0	0.024735	1	2534	2534		16.53	4.5975	1	104060	+		28779	21124	19822	19863	33293	33293					-0.09600949163700534
ITEEATNSAR	10	Unmodified	_ITEEATNSAR_					0	0	0			REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.302001953125	2	546.27001	1090.52547	-0.74217	-0.00040542	4.0226	0.0021974	3.2804	0.001792	546.2725457522852	64.969	0.55914	64.734	64.452	65.011	-0.2345					29	13	3	0	0	0	0.03519	1	7382	7382		19.104	0	1	764900	+		28780	24741	19823	19864	33294	33294					-0.016175446383613235
ITEEDLSSH	9	Unmodified	_ITEEDLSSH_					0	0	0		nc|ENSG00000126804|Q9Y2K1-2|ZBTB1;ENSG00000126804|ENST00000683701|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7902221679688	2	515.738011	1029.46147	-0.098226	-5.0659E-05	0.49992	0.00025783	0.4017	0.00020717	515.7383505113362	41.164	1.0298	41.164	40.728	41.758	0					45	28	2	0	0	0	0.024436	1	3705	3705		23.042	0	1	282620			28781	4215	19824	19865	33295	33295					-0.0520832479528508
ITEEVRRD	8	Unmodified	_ITEEVRRD_					0	0	0		ENST00000590717.1_1_19:36035753-36035843:-|nuORF	ENST00000590717.1_1_19:36035753-36035843:-|nuORF	ENST00000590717.1_1_19:36035753-36035843:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.27349853515625	2	509.269813	1016.52507	0.096566	4.9178E-05	4.3732	0.0022271	4.4697	0.0022763	509.27144099897237	80.094	1.4193	79.875	79.035	80.454	-0.21923					67	33	4	0	0	0	0.50239	1	9613	9613		85.359	30.583	1	411860			28782	17338	19825	19866	33296	33296					0.017470804324716482
ITELCRDMF	9	Unmodified	_ITELCRDMF_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2664794921875	2	564.264827	1126.5151	-0.0093432	-5.2721E-06	2.8075	0.0015842	2.7981	0.0015789	564.2663254149563	76.581	0.91814	76.313	76.008	76.927	-0.26806					49	21	4	0	0	0	0.20967	1	9092	9092		87.754	5.4493	1	3573600			28783	9815	19826	19867	33297	33297					-0.04309566888764493
ITELCRDMF	9	Unmodified	_ITELCRDMF_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2669067382812	2	564.264827	1126.5151	0.14986	8.4558E-05	2.7384	0.0015452	2.8882	0.0016297	564.2662646053504	76.544	0.91956	76.293	75.984	76.903	-0.25162					49	21	4	0	0	0	0.033448	3	9091	9079;9091;9103		138.83	53.466	1	3953100			28784	9815	19826	19867	33298;33299;33300	33299					-0.04309566888764493
ITELCRDMF	9	Unmodified	_ITELCRDMF_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2664794921875	2	564.264827	1126.5151	-0.17958	-0.00010133	2.8727	0.001621	2.6932	0.0015197	564.2663760655837	76.371	0.87784	76.202	75.816	76.693	-0.16854					49	20	4	0	0	0	0.039744	4	9040	9040;9052;9074;9087		133.81	25.725	1	4199200			28785	9815	19826	19867	33301;33302;33303;33304	33301					-0.04309566888764493
ITELINII	8	Unmodified	_ITELINII_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2684326171875	2	464.789318	927.564084	-0.97888	-0.00045497	3.3845	0.0015731	2.4056	0.0011181	464.79088311742635	38.414	0.61324	38.441	38.197	38.81	0.027275					26	16	2	0	0	0	0.027866	1	3199	3199		13.775	4.953	1	167220	+		28786	28058	19827	19868	33305	33305					0.09740412734140591
ITELLVRTL	9	Unmodified	_ITELLVRTL_					0	0	0		ENST00000359513.8_1_11:46679078-46680967:+|nuORF	ENST00000359513.8_1_11:46679078-46680967:+|nuORF	ENST00000359513.8_1_11:46679078-46680967:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8109130859375	2	529.334424	1056.6543	-0.74687	-0.00039534	0.10509	5.5628E-05	-0.64178	-0.00033972	529.3343346424758	73.344	0.87996	73.079	72.767	73.647	-0.26479					45	21	4	0	0	0	0.024447	1	8631	8631		49.442	0	1	1804500			28787	12740	19828	19869	33306	33306					0.12823462062578983
ITELYLCDGT	10	Unmodified	_ITELYLCDGT_					0	0	0			REV__ENST00000402744.8_1_4:166414410-166416791:+|nuORF	REV__ENST00000402744.8_1_4:166414410-166416791:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2670288085938	2	564.26809	1126.52163	0.14985	8.4558E-05	-3.0436	-0.0017174	-2.8938	-0.0016329	564.2662646053504	76.544	0.91956	76.293	75.984	76.903	-0.25162					49	21	4	0	0	0	0.3934	1	9116	9116		99.375	17.07	1	3953100	+		28788	31875	19829	19870	33307	33307					-0.03657350456410313
ITEPEAEPQ	9	Unmodified	_ITEPEAEPQ_					0	0	0		RAB11FIP1|p.E518Q|1|0.06|ENSG00000156675|chr8:37874585-37874585|C/G|missense_variant	RAB11FIP1|p.E518Q|1|0.06|ENSG00000156675|chr8:37874585-37874585|C/G|missense_variant	RAB11FIP1|p.E518Q|1|0.06|ENSG00000156675|chr8:37874585-37874585|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.31573486328125	2	507.242929	1012.47131	-0.49537	-0.00025127	1.8297	0.00092809	1.3343	0.00067682	507.24469945869157	68.862	0.26288	68.862	68.754	69.016	0					11	6	3	0	0	0	0.024323	1	8260	8260		53.351	0	1	74789			28789	19018	19830	19871	33308	33308					-0.034431367899060206
ITEPEHTKE	9	Unmodified	_ITEPEHTKE_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2786865234375	2	542.269478	1082.5244	-1.0141	-0.00054991	-2.0275	-0.0010995	-3.0416	-0.0016494	542.268280059553	53.579	0.38713	53.381	53.201	53.588	-0.19739					20	10	2	0	0	0	0.024523	1	5626	5626		29.15	0	1	649570			28790	8864	19831	19872	33309	33309					-0.013557590072423409
ITEQAHIREN	10	Unmodified	_ITEQAHIREN_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5538024902344	3	404.210676	1209.6102	0.33463	0.00013526	-3.8798	-0.0015683	-3.5452	-0.001433	404.2088087296472	29.25	0.51719	29.077	28.808	29.325	-0.17258					16	11	2	0	0	0	0.03519	1	1787	1787		23.378	3.3474	1	49341	+		28791	19695	19832	19873	33310	33310					0.013778258982711122
ITERSVLNLY	10	Unmodified	_ITERSVLNLY_					0	0	0		ENST00000443945.6_1_13:47127426-47279607:+|nuORF;nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1	ENST00000443945.6_1_13:47127426-47279607:+|nuORF	ENST00000443945.6_1_13:47127426-47279607:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	604.2850952148438	2	604.337695	1206.66084	-0.75306	-0.0004551	0.74141	0.00044806	-0.011657	-7.0445E-06	604.338049526951	62.302	0.23405	62.088	61.972	62.206	-0.21375					10	5	2	0	0	0	0.03519	1	6999	6999		72.879	0	1	50804			28792	4986	19833	19874	33311	33311					0.06577355223294035
ITESCVLTAM	10	Unmodified	_ITESCVLTAM_					0	0	0		ENSG00000180433|ENST00000641861|OR6K6;nc|ENSG00000180433|Q8NGW6|OR6K6	ENSG00000180433|ENST00000641861|OR6K6	ENSG00000180433|ENST00000641861|OR6K6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2635498046875	2	534.25921	1066.50387	-0.91011	-0.00048623	1.4767	0.00078892	0.56656	0.00030269	534.2598465147702	30.907	0.48594	30.729	30.583	31.069	-0.17818					23	11	3	0	0	0	0.03519	1	1987	1987		51.335	17.163	1	168730			28793	8978	19834	19875	33312	33312					-0.02672388982909979
ITEVKKVCV	9	Unmodified	_ITEVKKVCV_					0	0	0		ENST00000225388.8_1_17:27589420-27589522:-|nuORF	ENST00000225388.8_1_17:27589420-27589522:-|nuORF	ENST00000225388.8_1_17:27589420-27589522:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8036193847656	2	509.801903	1017.58925	0.56391	0.00028748	2.8432	0.0014495	3.4071	0.0017369	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.72875	1	10573	10573		44.117	4.864	1	3699900			28794	11205	19835	19876	33313	33313					0.08116144265068215
ITFAAVALD	9	Unmodified	_ITFAAVALD_					0	0	0			REV__ENSG00000105737|ENST00000593562|GRIK5	REV__ENSG00000105737|ENST00000593562|GRIK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2478332519531	2	460.758018	919.501483	1.0152	0.00046777	2.0856	0.00096095	3.1008	0.0014287	460.7588474339722	71.257	0.64742	70.968	70.546	71.193	-0.28857					25	15	2	0	0	0	0.024477	1	8620	8620		27.882	13.017	1	161440	+		28795	21561	19836	19877	33314	33314					0.038512666659471506
ITFGAKNIIEI	11	Unmodified	_ITFGAKNIIEI_					0	0	0			REV__nc|ENSG00000143156|Q9Y5B8-2|NME7	REV__nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.9080505371094	3	406.907934	1217.70197	0.43289	0.00017615	0.72669	0.0002957	1.1596	0.00047185	406.9081629561266	55.497	1.2967	55.266	54.963	56.259	-0.23087					92	35	4	0	0	0	0.98082	1	5959	5959		41.08	2.3265	1	4107200	+		28796	24204	19837	19878	33315	33315					0.1018311626276045
ITFGHPVVE	9	Unmodified	_ITFGHPVVE_					0	0	0		nc|ENSG00000197713|Q96AT9-4|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE	nc|ENSG00000197713|Q96AT9-4|RPE	nc|ENSG00000197713|Q96AT9-4|RPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.7690734863281	2	499.768917	997.523281	0.88295	0.00044127	-0.3483	-0.00017407	0.53466	0.0002672	499.7685638252807	19.648	0.49397	19.414	19.226	19.72	-0.23345					23	9	3	0	0	0	0.92825	1	432	432		30.504	2.6214	1	260980			28797	10037	19838	19879	33316	33316					0.024420714145207967
ITFHWTKI	8	Unmodified	_ITFHWTKI_					0	0	0			REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.29736328125	2	523.295102	1044.57565	-1.7492	-0.00091535	2.1516	0.0011259	0.40237	0.00021056	523.2950570466779	51.874	1.3508	51.605	51.203	52.553	-0.26904					80	35	4	0	0	0	0.89627	1	5407	5407		51.335	3.6781	1	7671500	+		28798	34078	19839	19880	33317	33317					0.05514654548119324
ITFPRAAIL	9	Unmodified	_ITFPRAAIL_					0	0	0			REV__nc|ENSG00000137413|Q7Z7C8-2|TAF8	REV__nc|ENSG00000137413|Q7Z7C8-2|TAF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	501.310752	1000.60695	0.31833	0.00015958	-2.6119	-0.0013094	-2.2936	-0.0011498	501.30876021946443	85.895	0.46864	85.7	85.427	85.895	-0.19508					13	10	2	0	0	0	0.024506	1	10411	10411		6.3127	0	1	60826	+		28799	36700	19840	19881	33318	33318					0.10667227582223404
ITFQSLLYI	9	Unmodified	_ITFQSLLYI_					0	0	0		ENST00000305366.7_1_3:149087298-149087391:-|nuORF	ENST00000305366.7_1_3:149087298-149087391:-|nuORF	ENST00000305366.7_1_3:149087298-149087391:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.318115234375	2	549.3157	1096.61685	-0.43545	-0.0002392	4.4326	0.0024349	3.9971	0.0021957	549.3180052231875	99.575	0.68658	99.585	99.223	99.91	0.010239					46	15	4	0	0	0	0.87448	1	12726	12726		34.173	5.023	1	445600			28800	11986	19841	19882	33319	33319					0.07240370796944262
ITFSFHLF	8	Unmodified	_ITFSFHLF_					0	0	0		ENST00000426778.5_1_2:128014926-128015172:-|nuORF	ENST00000426778.5_1_2:128014926-128015172:-|nuORF	ENST00000426778.5_1_2:128014926-128015172:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.8085632324219	2	506.268553	1010.52255	-0.062929	-3.1859E-05	-4.0855	-0.0020684	-4.1484	-0.0021002	506.26627177220695	57.717	0.45679	57.527	57.332	57.789	-0.19018					35	11	4	0	0	0	0.027866	1	6349	6349		25.45	4.9683	1	1661000			28801	14096	19842	19883	33320	33320					0.017712767654643358
ITFSLVKT	8	Unmodified	_ITFSLVKT_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-7|AKNA;REV__ENSG00000122591|ENST00000432176|HYCC1	REV__nc|ENSG00000106948|Q7Z591-7|AKNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7400207519531	2	454.776211	907.537869	-0.13485	-6.1327E-05	0.55305	0.00025152	0.4182	0.00019019	454.77631999296875	75.124	0.57719	75.124	74.835	75.413	0					23	14	3	0	0	0	0.027866	1	9170	9170		21.96	0	1	210620	+		28802	21648;22655	19843	19884	33321	33321					0.0804014356266407
ITFVLNEDP	9	Unmodified	_ITFVLNEDP_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2999877929688	2	524.27149	1046.52843	0.56342	0.00029538	-0.33863	-0.00017754	0.22479	0.00011785	524.7726654747931	18.402	0.83886	18.245	18.002	18.84	-0.15637					23	16	2	0	0	0	0.023417	1	292	292		49.442	0	1	27540	+		28803	24738	19844	19885	33322	33322					0.00702330486478786
ITGCTKPT	8	Unmodified	_ITGCTKPT_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.8915710449219	2	410.715296	819.416039	-0.52274	-0.0002147	-2.9558	-0.001214	-3.4785	-0.0014287	410.713862267939	27.998	1.328	27.83	27.57	28.898	-0.16818					81	31	4	0	0	0	0.027866	1	1663	1663		29.15	0	1	4946100			28804	6396	19845	19886	33323	33323					-0.0008922179137016428
ITGFSLHSK	9	Unmodified	_ITGFSLHSK_					0	0	0		ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.292236328125	2	495.274367	988.53418	0.43453	0.00021521	2.1281	0.001054	2.5626	0.0012692	495.27530258932643	68.41	0.39868	68.18	67.958	68.357	-0.23048					26	9	4	0	0	0	0.024374	1	7925	7925		49.442	6.9671	1	404970			28805	15131	19846	19887	33324	33324					0.03945473788803611
ITGLAALKR	9	Unmodified	_ITGLAALKR_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7532958984375	2	471.808377	941.6022	-0.69707	-0.00032888	1.1818	0.00055761	0.48478	0.00022872	471.8087507247449	35.77	0.28773	35.727	35.608	35.896	-0.042454					10	7	2	0	0	0	0.024541	1	2747	2747		16.473	0	1	66950			28806	7284	19847	19888	33325	33325					0.12906343439476586
ITGLRYDYY	9	Unmodified	_ITGLRYDYY_					0	0	0		CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	CDC20B|p.N230Y|1|0.26|ENSG00000164287|chr5:55133421-55133421|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.81640625	2	582.290214	1162.56587	-1.0252	-0.00059696	-0.60082	-0.00034985	-1.626	-0.00094681	582.2898271795984	65.03	0.52173	64.774	64.582	65.103	-0.25563					18	12	2	0	0	0	0.024323	1	7439	7439		44.117	0	1	208990			28807	233	19848	19889	33326	33326					-0.00890578247913254
ITGNHTIRILQ	11	Unmodified	_ITGNHTIRILQ_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.58221435546875	3	422.582333	1264.72517	0.49638	0.00020976	-1.3479	-0.0005696	-0.85152	-0.00035984	422.58168788498597	95.965	2.872	95.828	94.982	97.854	-0.13689					198	65	4	0	0	0	1.0805	1	11846	11846		10.998	0	1	769050	+		28808	19268	19849	19890	33327	33327					0.10339555100085818
ITGPQSFA	8	Unmodified	_ITGPQSFA_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.8913879394531	2	410.713611	819.412668	-0.61763	-0.00025367	1.1215	0.00046061	0.50387	0.00020695	410.71386599945083	28.175	1.1607	27.93	27.677	28.838	-0.24524					62	27	4	0	0	0	0.027866	1	1675	1675		21.96	1.013	1	3583000	+		28809	36458	19850	19891	33328	33328					-0.004261485737060866
ITGPSLEGDL	10	Unmodified	_ITGPSLEGDL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.L673Cfs*4|1|0.26|ENSG00000124942|chr11:62532357-62532399|AGCTTAACATCGGGGCCTTTAAGTTTTCCCCCCAGACCCTCCA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3158264160156	2	501.261122	1000.50769	0.23288	0.00011673	-0.38322	-0.00019209	-0.15034	-7.5359E-05	501.2608969897139	59.871	0.75567	59.695	59.401	60.156	-0.1761					32	19	3	0	0	0	0.03519	1	6708	6708		19.997	0	1	669040			28810	4084	19851	19892	33329	33329					0.007457401068336367
ITGRELRSK	9	Unmodified	_ITGRELRSK_					0	0	0		NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3226928710938	2	530.317097	1058.61964	-1.4859	-0.00078801	-1.4745	-0.00078195	-2.9604	-0.00157	530.818425477431	106.25	0.52138	106.12	105.89	106.42	-0.1328					36	21	3	0	0	0	0.024319	1	13214	13214		31.53	0	1	172290			28811	914	19852	19893	33330	33330					0.09267638974483816
ITGRTTTSEEL	11	Unmodified	_ITGRTTTSEEL_					0	0	0		ENST00000496216.5_1_7:73115159-73120193:-|nuORF;nc|ENSG00000106089|Q16623-3|STX1A;nc|ENSG00000106089|Q16623-2|STX1A;ENSG00000106089|ENST00000222812|STX1A	ENST00000496216.5_1_7:73115159-73120193:-|nuORF	ENST00000496216.5_1_7:73115159-73120193:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	603.8405151367188	2	604.311874	1206.6092	-0.22742	-0.00013743	-1.4088	-0.00085135	-1.6362	-0.00098878	604.3112824886548	80.226	0.58105	79.989	79.747	80.328	-0.23784					15	13	2	0	0	0	0.024723	1	9617	9617		23.523	10.711	1	150470			28812	2759	19853	19894	33331	33331					0.014155667387285575
ITGRTTTSEEL	11	Unmodified	_ITGRTTTSEEL_					0	0	0		ENST00000496216.5_1_7:73115159-73120193:-|nuORF;nc|ENSG00000106089|Q16623-3|STX1A;nc|ENSG00000106089|Q16623-2|STX1A;ENSG00000106089|ENST00000222812|STX1A	ENST00000496216.5_1_7:73115159-73120193:-|nuORF	ENST00000496216.5_1_7:73115159-73120193:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	604.311874	1206.6092	-1.4105	-0.00085235	-0.6554	-0.00039607	-2.0659	-0.0012484	604.3114136571107	80.354	0.54836	80.202	80.008	80.556	-0.15168	0.11215	0.0010597	NaN	28.081	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102650			28813	2759	19853	19894							0.014155667387285575
ITGSCQLGPF	10	Unmodified	_ITGSCQLGPF_					0	0	0			REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7548522949219	2	511.75241	1021.49027	0.1943	9.9435E-05	-4.1863	-0.0021424	-3.992	-0.0020429	511.75011219844515	37.01	1.0202	36.947	36.432	37.452	-0.063385					54	26	3	0	0	0	0.03519	1	3047	3047		14.137	1.1779	1	1396900	+		28814	34284	19854	19895	33332	33332					-0.01961878699830777
ITGSDERSPT	10	Unmodified	_ITGSDERSPT_					0	0	0			REV__ENST00000393562.6_1_X:153759983-153760211:-|nuORF	REV__ENST00000393562.6_1_X:153759983-153760211:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.28564453125	2	531.756735	1061.49892	0.26026	0.00013839	4.049	0.0021531	4.3093	0.0022915	531.7585317654989	79.997	0.58586	79.75	79.447	80.032	-0.2465					29	13	3	0	0	0	0.03519	1	9569	9569		37.812	4.9991	1	354600	+		28815	31648	19855	19896	33333	33333					-0.02937233529655714
ITGSHRTLD	9	Unmodified	_ITGSHRTLD_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2875061035156	2	500.26453	998.514508	-0.7853	-0.00039286	4.3911	0.0021967	3.6058	0.0018038	500.2668545208277	55.643	1.0639	55.741	55.371	56.435	0.098015					59	28	3	0	0	0	0.024263	1	6077	6077		60.972	27.456	1	1921200	+		28816	19855	19856	19897	33334	33334					0.015190977780548565
ITGSLKKTN	9	Unmodified	_ITGSLKKTN_					0	0	0		ENST00000301923.13_2_22:40731254-40731416:+|nuORF	ENST00000301923.13_2_22:40731254-40731416:+|nuORF	ENST00000301923.13_2_22:40731254-40731416:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2856140136719	2	481.287474	960.560395	-0.27734	-0.00013348	3.8736	0.0018643	3.5963	0.0017308	481.289185613373	62.96	1.895	62.96	62.489	64.384	0					106	50	4	0	0	0	0.70156	1	7331	7331		45.972	1.8554	1	11079000			28817	11943	19857	19898	33335	33335					0.07853742960287491
ITGSLKKTN	9	Unmodified	_ITGSLKKTN_					0	0	0		ENST00000301923.13_2_22:40731254-40731416:+|nuORF	ENST00000301923.13_2_22:40731254-40731416:+|nuORF	ENST00000301923.13_2_22:40731254-40731416:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2890930175781	2	481.287474	960.560395	0.72725	0.00035002	3.0032	0.0014454	3.7305	0.0017954	481.2888045720546	62.94	1.3548	62.995	62.557	63.912	0.054104					102	35	4	0	0	0	0.42604	1	7285	7285		64.207	4.089	1	10782000			28818	11943	19857	19898	33336	33336					0.07853742960287491
ITGTLFGVNLD	11	Unmodified	_ITGTLFGVNLD_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.7845458984375	2	575.311146	1148.60774	-0.080665	-4.6408E-05	0.18759	0.00010792	0.10692	6.1515E-05	575.3110092931663	52.777	0.36174	52.65	52.391	52.753	-0.12705					15	8	3	0	0	0	0.024765	1	5509	5509		33.922	12.975	1	844140			28819	959	19858	19899	33337	33337					0.039379774406370416
ITGTLFGVNLD	11	Unmodified	_ITGTLFGVNLD_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	575.311146	1148.60774	-1.2803	-0.0007366	0.25924	0.00014914	-1.0211	-0.00058745	575.310891023425	53.049	0.33075	53.049	52.901	53.232	0	0.21289	0.00069196	NaN	33.922	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89088			28820	959	19858	19899							0.039379774406370416
ITGTLFGVNLD	11	Unmodified	_ITGTLFGVNLD_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	575.311146	1148.60774	-0.49762	-0.00028629	-1.0623	-0.00061116	-1.5599	-0.00089745	575.3103677734719	52.891	0.37437	52.987	52.753	53.127	0.095669	0.15028	-0.00082865	NaN	33.922	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95008			28821	959	19858	19899							0.039379774406370416
ITGWQGNIF	9	Unmodified	_ITGWQGNIF_					0	0	0			REV__ENSG00000164099|ENST00000296498|PRSS12	REV__ENSG00000164099|ENST00000296498|PRSS12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2950439453125	2	518.266542	1034.51853	-0.040404	-2.094E-05	-1.5356	-0.00079587	-1.576	-0.00081681	518.7672229516382	34.291	0.55051	34.084	33.895	34.446	-0.20696					17	13	2	0	0	0	0.024209	1	2526	2526		76.774	27.333	1	48088	+		28822	25693	19859	19900	33338	33338					0.002651872717478909
ITGWQGNIF	9	Unmodified	_ITGWQGNIF_					0	0	0			REV__ENSG00000164099|ENST00000296498|PRSS12	REV__ENSG00000164099|ENST00000296498|PRSS12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.266542	1034.51853	-1.2916	-0.00066942	0.12181	6.3132E-05	-1.1698	-0.00060629	518.2666205577458	34.386	0.26565	34.436	34.292	34.557	0.050255	0.17605	0.0010056	NaN	76.774	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144220	+		28823	25693	19859	19900							0.002651872717478909
ITGWRRKI	8	Unmodified	_ITGWRRKI_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8021850585938	2	515.319443	1028.62433	-0.26277	-0.00013541	-4.042	-0.0020829	-4.3047	-0.0022183	515.8173059698282	59.929	0.24955	59.729	59.616	59.866	-0.20016					10	6	3	0	0	0	0.027866	1	6839	6839		33.516	0	1	66721			28824	1839	19860	19901	33339	33339					0.11116567907879471
ITHGFLYP	8	Unmodified	_ITHGFLYP_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.8153991699219	2	474.252903	946.491253	1.5951	0.00075647	-2.086	-0.0009893	-0.49092	-0.00023282	474.2516715058129	24.728	0.94994	24.547	24.241	25.191	-0.18089					30	21	2	0	0	0	0.027866	1	1093	1093		35.201	5.3592	1	93082			28825	6398	19861	19902	33340	33340					0.015867037313682886
ITHIVNQNF	9	Unmodified	_ITHIVNQNF_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.289306640625	2	543.290548	1084.56654	-0.93662	-0.00050886	0.20906	0.00011358	-0.72756	-0.00039528	543.2906600227147	48.26	1.8272	48.163	47.667	49.494	-0.097549					121	48	5	0	0	0	0.2508	3	4754	4754;4763;4775		82.241	30.905	1	16089000			28826	3327	19862	19903	33341;33342;33343	33341					0.027642611918054172
ITHIVNQNF	9	Unmodified	_ITHIVNQNF_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2900390625	2	543.290548	1084.56654	-1.3023	-0.00070755	0.47696	0.00025913	-0.82538	-0.00044842	543.2907952392878	48.555	1.5112	48.279	47.851	49.362	-0.27598					116	40	4	0	0	0	0.17822	3	4810	4789;4799;4810		93.195	28.988	1	15849000			28827	3327	19862	19903	33344;33345;33346	33346					0.027642611918054172
ITHIVNQNF	9	Unmodified	_ITHIVNQNF_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2898559570312	2	543.290548	1084.56654	-0.68586	-0.00037262	-0.15428	-8.3819E-05	-0.84014	-0.00045644	543.290459277285	48.397	1.2462	48.21	47.902	49.148	-0.18684					106	33	5	0	0	0	0.23085	3	4779	4768;4779;4791		84.916	21.269	1	14610000			28828	3327	19862	19903	33347;33348;33349	33348					0.027642611918054172
ITHLMMQQLL	10	Unmodified	_ITHLMMQQLL_					0	0	0		ENST00000488016.1_1_3:110831041-110831131:+|nuORF	ENST00000488016.1_1_3:110831041-110831131:+|nuORF	ENST00000488016.1_1_3:110831041-110831131:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.89141845703125	3	409.891122	1226.65154	-0.34386	-0.00014095	0.11429	4.6847E-05	-0.22957	-9.4099E-05	409.8912933252354	28.321	1.1294	28.152	27.768	28.897	-0.16897					47	26	2	0	0	0	0.96822	1	1637	1637		49.536	10.283	1	2611000			28829	15382	19863	19904	33350	33350					0.04727547341758509
ITHLTGPGGEL	11	Unmodified	_ITHLTGPGGEL_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3107299804688	2	547.795663	1093.57677	-1.1898	-0.00065174	1.2099	0.00066276	0.020105	1.1014E-05	547.795634035085	63.052	0.21042	62.813	62.695	62.905	-0.23926					5	4	2	0	0	0	0.024741	1	7315	7315		45.972	8.8131	1	154300	+		28830	24140	19864	19905	33351	33351					0.03372824126381602
ITHYMPPE	8	Unmodified	_ITHYMPPE_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-8|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-8|TRPM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2544250488281	2	494.233853	986.453153	-0.22444	-0.00011093	4.1242	0.0020383	3.8997	0.0019274	494.2356722015385	57.277	0.10552	57.053	56.998	57.104	-0.2248					4	2	2	0	0	0	0.027866	1	6231	6231		33.516	0	1	50531	+		28831	20706	19865	19906	33352	33352					-0.04061550245603485
ITICIIINN	9	Unmodified	_ITICIIINN_					0	0	0		SCN11A|p.T591N|1|0.26|ENSG00000168356|chr3:38903935-38903935|G/T|missense_variant	SCN11A|p.T591N|1|0.26|ENSG00000168356|chr3:38903935-38903935|G/T|missense_variant	SCN11A|p.T591N|1|0.26|ENSG00000168356|chr3:38903935-38903935|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2764892578125	2	508.794078	1015.5736	0.45535	0.00023168	-2.8366	-0.0014432	-2.3812	-0.0012116	508.79265938623547	71.055	0.50511	71.055	70.909	71.415	0					19	12	2	0	0	0	0.024405	1	8590	8590		35.618	7.364	1	429410			28832	37860	19866	19907	33353	33353					0.06643857748031223
ITICIIINN	9	Unmodified	_ITICIIINN_					0	0	0		SCN11A|p.T591N|1|0.26|ENSG00000168356|chr3:38903935-38903935|G/T|missense_variant	SCN11A|p.T591N|1|0.26|ENSG00000168356|chr3:38903935-38903935|G/T|missense_variant	SCN11A|p.T591N|1|0.26|ENSG00000168356|chr3:38903935-38903935|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.7959899902344	2	508.794078	1015.5736	0.19121	9.7284E-05	0.85243	0.00043371	1.0436	0.000531	508.79437577539767	104.53	0.67113	104.4	104.14	104.81	-0.12561					38	17	3	0	0	0	0.75397	1	13010	13010		42.396	1.618	1	161550			28833	37860	19866	19907	33354	33354					0.06643857748031223
ITIFKAPVD	9	Unmodified	_ITIFKAPVD_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2961120605469	2	502.294768	1002.57498	1.5862	0.00079675	-1.8051	-0.00090667	-0.21883	-0.00010992	502.2936448128196	63.482	1.3003	63.536	63.233	64.533	0.054104					69	35	4	0	0	0	0.53979	1	7365	7365		56.721	7.2795	1	4010300	+		28834	24676	19867	19908	33355	33355					0.07379815108424737
ITIFSLSTLLI	11	Unmodified	_ITIFSLSTLLI_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C;ENST00000557504.1_1_14:77718073-77723066:+|nuORF	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.5789489746094	3	407.588202	1219.74278	0.50023	0.00020389	2.1067	0.00085869	2.607	0.0010626	407.5889090836594	34.334	0.18857	34.384	34.329	34.518	0.050255					7	4	2	0	0	0	0.024743	1	2513	2513		36.318	6.7669	1	33860			28835	7430	19868	19909	33356	33356					0.14169457582397627
ITIGPFPTV	9	Unmodified	_ITIGPFPTV_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7766418457031	2	472.776211	943.537869	-0.34485	-0.00016304	0.73701	0.00034844	0.39216	0.0001854	472.7763802643566	79.401	2.2977	79.229	78.195	80.493	-0.17226					108	54	3	0	0	0	0.43973	1	9781	9781		63.306	0	1	1264700	+		28836	20903	19869	19910	33357	33357					0.06384143562650024
ITIHHPIY	8	Unmodified	_ITIHHPIY_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.7171936035156	2	497.279452	992.544351	0.18398	9.149E-05	3.1363	0.0015596	3.3202	0.0016511	497.2809104578834	36.311	0.84978	36.095	35.879	36.729	-0.21661					40	21	2	0	0	0	0.027866	1	2879	2879		33.516	13.034	1	1393300			28837	858	19870	19911	33358	33358					0.04778081514029964
ITIHHPIY	8	Unmodified	_ITIHHPIY_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.7174072265625	2	497.279452	992.544351	1.0272	0.00051079	2.142	0.0010652	3.1692	0.001576	497.28040456895167	36.221	0.80704	36.023	35.809	36.616	-0.19829					36	20	2	0	0	0	0.027866	1	2861	2861		25.45	0	1	1220300			28838	858	19870	19911	33359	33359					0.04778081514029964
ITIHNVPEGL	10	Unmodified	_ITIHNVPEGL_					0	0	0		nc|ENSG00000133195|Q8N1S5|SLC39A11;ENSG00000133195|ENST00000255559|SLC39A11	nc|ENSG00000133195|Q8N1S5|SLC39A11	nc|ENSG00000133195|Q8N1S5|SLC39A11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.278076171875	2	546.806031	1091.59751	-0.36494	-0.00019955	-0.28883	-0.00015793	-0.65377	-0.00035748	546.8057490948154	61.969	0.51365	61.756	61.458	61.972	-0.21375					21	12	2	0	0	0	0.03519	1	6978	6978		5.5578	0	1	692240			28839	4691	19871	19912	33360	33360					0.05537414506034111
ITIHVKVQRN	10	Unmodified	_ITIHVKVQRN_					0	0	0		ENST00000564702.1_1_15:30771228-30776788:+|nuORF	ENST00000564702.1_1_15:30771228-30776788:+|nuORF	ENST00000564702.1_1_15:30771228-30776788:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.247314453125	3	403.247173	1206.71969	0.52792	0.00021288	-1.1684	-0.00047116	-0.64049	-0.00025827	403.2466960427338	103.28	1.2607	103.29	102.89	104.15	0.0054245					81	31	4	0	0	0	1.1161	1	13215	13215		30.569	2.4874	1	2575000			28840	16901	19872	19913	33361	33361					0.12459876308275852
ITIKNHSPT	9	Unmodified	_ITIKNHSPT_					0	0	0		ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.2525939941406	2	505.785099	1009.55564	0.078924	3.9919E-05	3.3825	0.0017108	3.4614	0.0017507	505.78665600027523	61.26	0.42072	61.26	61.032	61.453	0					15	8	2	0	0	0	0.024292	1	7106	7106		40.778	10.275	1	369660			28841	8623	19873	19914	33362	33362					0.051248588175326404
ITIKNHSPT	9	Unmodified	_ITIKNHSPT_					0	0	0		ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.785099	1009.55564	0.054792	2.7713E-05	3.3487	0.0016937	3.4035	0.0017215	505.78653725941354	61.498	0.44437	61.271	61.011	61.455	-0.22663	0.021644	5.5438E-06	NaN	40.778	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541290			28842	8623	19873	19914							0.051248588175326404
ITIKNHSPT	9	Unmodified	_ITIKNHSPT_					0	0	0		ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.785099	1009.55564	0.13417	6.7862E-05	3.3033	0.0016708	3.4375	0.0017386	505.7866255259295	61.147	0.49043	61.218	61.022	61.512	0.071129	-0.031729	-4.0432E-05	NaN	40.778	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519390			28843	8623	19873	19914							0.051248588175326404
ITIKTSLIS	9	Unmodified	_ITIKTSLIS_					0	0	0		ENST00000492808.5_1_1:26644456-26645257:+|nuORF	ENST00000492808.5_1_1:26644456-26645257:+|nuORF	ENST00000492808.5_1_1:26644456-26645257:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2586669921875	2	488.307875	974.601197	-0.3433	-0.00016764	0.19739	9.6386E-05	-0.14591	-7.1249E-05	488.3079175260275	41.566	0.10222	41.589	41.53	41.633	0.023003					4	2	2	0	0	0	0.024541	1	3695	3695		14.137	0.36179	1	67261			28844	15490	19874	19915	33363	33363					0.11288084279908617
ITIKVVDD	8	Unmodified	_ITIKVVDD_					0	0	0			REV__nc|ENSG00000151332|Q9NS73-3|MBIP	REV__nc|ENSG00000151332|Q9NS73-3|MBIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.77313232421875	2	451.7633	901.512048	-0.077855	-3.5172E-05	0.28582	0.00012912	0.20797	9.3952E-05	451.76331927367573	79.054	0.79002	78.882	78.526	79.316	-0.17226					31	18	2	0	0	0	0.027866	1	9786	9786		34.173	11.13	1	258840	+		28845	24765	19875	19916	33364	33364					0.057352493203779886
ITILKLLGV	9	Unmodified	_ITILKLLGV_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.338978	968.663404	-1.088	-0.00052807	3.7562	0.001823	2.6682	0.001295	485.3405465896348	40.402	0.29446	40.425	40.199	40.494	0.023003					11	7	2	0	0	0	0.024374	1	3472	3472		40.778	0	1	130080			28846	1973	19876	19917	33365	33365					0.1778185541890025
ITILRELFFN	10	Unmodified	_ITILRELFFN_					0	0	0			REV__KCNK13|p.L144F|1|0.14|ENSG00000152315|chr14:90184206-90184206|C/T|missense_variant	REV__KCNK13|p.L144F|1|0.14|ENSG00000152315|chr14:90184206-90184206|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3683471679688	2	633.366256	1264.71796	0.38898	0.00024637	4.101	0.0025974	4.49	0.0028438	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	1.0002	2	11881	11881;11953		45.972	8.5645	1	3178500	+		28847	36173	19877	19918	33366;33367	33366					0.09618822499669477
ITILRELFFN	10	Unmodified	_ITILRELFFN_					0	0	0			REV__KCNK13|p.L144F|1|0.14|ENSG00000152315|chr14:90184206-90184206|C/T|missense_variant	REV__KCNK13|p.L144F|1|0.14|ENSG00000152315|chr14:90184206-90184206|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3692016601562	2	633.366256	1264.71796	0.30625	0.00019397	4.1235	0.0026117	4.4298	0.0028057	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	1.0122	1	11823	11823		44.377	3.599	1	9528000	+		28848	36173	19877	19918	33368	33368					0.09618822499669477
ITIPLAVVLI	10	Unmodified	_ITIPLAVVLI_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1;REV__ENSG00000170745|ENST00000304101|KCNS3	REV__ENSG00000170745|ENST00000304101|KCNS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2747802734375	2	526.359911	1050.70527	-0.2495	-0.00013133	2.5718	0.0013537	2.3223	0.0012224	526.3611474883836	34.681	1.1096	34.457	34.258	35.368	-0.22412					59	27	3	0	0	0	0.03519	1	2549	2549		24.203	8.5609	1	377270	+		28849	26500;22734	19879	19919	33369	33369					0.1819441110740172
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.831787109375	2	540.82984	1079.64513	-1.5879	-0.00085881	4.3337	0.0023438	2.7457	0.001485	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	0.76818	1	9318	9318		41.427	3.6151	1	90806000	+		28850	24589	19880	19920	33370	33370					0.10849113496897189
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8314819335938	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.80003	2	9331	9232;9331		39.253	3.6345	1	94452000	+		28851	24589	19880	19920	33371;33372	33372					0.10849113496897189
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8316650390625	2	540.82984	1079.64513	-0.45582	-0.00024652	3.2955	0.0017823	2.8397	0.0015358	540.8316944739571	75.373	1.966	75.383	75.051	77.017	0.010376					182	50	6	0	0	0	0.45795	1	9248	9248		62.107	29.295	1	103560000	+		28852	24589	19880	19920	33373	33373					0.10849113496897189
ITIQVFCIF	9	Unmodified	_ITIQVFCIF_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5	REV__nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.300048828125	2	542.298996	1082.58344	-1.2708	-0.00068918	3.4094	0.0018489	2.1385	0.0011597	542.3008168915045	64.723	1.688	64.769	64.448	66.137	0.045502					85	45	2	0	0	0	0.50848	1	7559	7559		58.782	5.4305	1	21138000	+		28853	26749	19881	19921	33374	33374					0.045450457533888766
ITIRKAHLL	9	Unmodified	_ITIRKAHLL_					0	0	0		ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7899169921875	2	532.850576	1063.6866	-0.58146	-0.00030983	3.164	0.001686	2.5826	0.0013761	532.8515729826224	64.251	0.29166	63.99	63.865	64.156	-0.26142					10	7	2	0	0	0	0.024541	1	7506	7506		25.45	3.7478	1	176220			28854	10447	19882	19922	33375	33375					0.15730294256240995
ITISKMTEP	9	Unmodified	_ITISKMTEP_					0	0	0		ENST00000502833.5_1_4:106344467-106395207:-|nuORF	ENST00000502833.5_1_4:106344467-106395207:-|nuORF	ENST00000502833.5_1_4:106344467-106395207:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2764892578125	2	510.275718	1018.53688	0.53585	0.00027343	-3.6381	-0.0018564	-3.1023	-0.001583	510.2735587206571	70.615	0.74947	70.615	70.316	71.065	0					45	17	4	0	0	0	0.024397	1	8590	8590		47.657	3.5405	1	1236700			28855	15676	19883	19923	33376	33376					0.028355611314623275
ITISNVIIF	9	Unmodified	_ITISNVIIF_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.3102111816406	2	510.310418	1018.60628	0.12972	6.6195E-05	-0.72284	-0.00036887	-0.59312	-0.00030268	510.3098626305178	75.625	1.2837	75.636	75.326	76.61	0.010376					79	33	4	0	0	0	0.35646	1	9207	9207		68.787	2.3575	1	4663000	+		28856	20300	19884	19924	33377	33377					0.09772388142528143
ITIVIPRFL	9	Unmodified	_ITIVIPRFL_					0	0	0		RELN|p.S1378F|1|0.37|ENSG00000189056|chr7:103589608-103589608|G/A|missense_variant	RELN|p.S1378F|1|0.37|ENSG00000189056|chr7:103589608-103589608|G/A|missense_variant	RELN|p.S1378F|1|0.37|ENSG00000189056|chr7:103589608-103589608|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3493041992188	2	536.349877	1070.6852	-0.55038	-0.00029519	0.41307	0.00022155	-0.1373	-7.3643E-05	536.3499720984712	87.617	1.069	87.479	87.163	88.232	-0.13734					67	25	4	0	0	0	0.77768	1	10648	10648		40.778	0	1	914780			28857	19040	19885	19925	33378	33378					0.152686601674759
ITKADAAEFW	10	Unmodified	_ITKADAAEFW_					0	0	0		ENSG00000114423|ENST00000394030|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;nc|ENSG00000114423|Q13191-3|CBLB;ENSG00000110395|ENST00000264033|CBL	ENSG00000114423|ENST00000394030|CBLB;ENSG00000110395|ENST00000264033|CBL	ENSG00000114423|ENST00000394030|CBLB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.2901000976562	2	576.290214	1150.56587	0.24541	0.00014143	-1.5628	-0.00090062	-1.3174	-0.00075919	576.2890723965521	59.595	1.0393	59.419	59.158	60.198	-0.1761					62	26	4	0	0	0	0.1169	1	6601	6601		131.62	41.246	1	2087000			28858	3362;3039	19886	19926	33379	33379					-0.00338578247942678
ITKADAAEFW	10	Unmodified	_ITKADAAEFW_					0	0	0		ENSG00000114423|ENST00000394030|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;nc|ENSG00000114423|Q13191-3|CBLB;ENSG00000110395|ENST00000264033|CBL	ENSG00000114423|ENST00000394030|CBLB;ENSG00000110395|ENST00000264033|CBL	ENSG00000114423|ENST00000394030|CBLB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.2901000976562	2	576.290214	1150.56587	-0.22207	-0.00012797	-1.0578	-0.00060959	-1.2798	-0.00073756	576.2894165683928	59.803	0.88475	59.555	59.252	60.137	-0.24841					64	22	4	0	0	0	0.32213	1	6609	6609		106.68	21.522	1	2093400			28859	3362;3039	19886	19926	33380	33380					-0.00338578247942678
ITKADAAEFW	10	Unmodified	_ITKADAAEFW_					0	0	0		ENSG00000114423|ENST00000394030|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;nc|ENSG00000114423|Q13191-3|CBLB;ENSG00000110395|ENST00000264033|CBL	ENSG00000114423|ENST00000394030|CBLB;ENSG00000110395|ENST00000264033|CBL	ENSG00000114423|ENST00000394030|CBLB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.290214	1150.56587	1.1602	0.0006686	-2.3053	-0.0013285	-1.1451	-0.0006599	576.2887475859403	59.73	0.72248	59.532	59.297	60.02	-0.19742	0.030195	-0.00074082	NaN	131.62	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1919200			28860	3362;3039	19886	19926							-0.00338578247942678
ITKAINTI	8	Unmodified	_ITKAINTI_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.274169921875	2	437.273835	872.533118	-0.16173	-7.0719E-05	0.24825	0.00010855	0.086519	3.7833E-05	437.2737897866579	42.443	1.0625	42.32	41.998	43.061	-0.12299					59	27	4	0	0	0	0.30053	2	3817	3817;3829		111.65	6.9017	1	2625200	+		28861	23567	19887	19927	33381;33382	33381					0.0917525941989652
ITKAINTI	8	Unmodified	_ITKAINTI_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2739562988281	2	437.273835	872.533118	-0.36718	-0.00016056	0.4414	0.00019301	0.074213	3.2452E-05	437.2738521152841	42.599	0.95246	42.367	42.042	42.994	-0.23186					55	24	4	0	0	0	0.30053	1	3834	3834		111.65	6.9017	1	2836900	+		28862	23567	19887	19927	33383	33383					0.0917525941989652
ITKAINTI	8	Unmodified	_ITKAINTI_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2734375	2	437.273835	872.533118	0.04472	1.9555E-05	-0.15007	-6.5623E-05	-0.10535	-4.6068E-05	437.2736358467694	42.592	0.95535	42.366	42.07	43.025	-0.22597					51	24	3	0	0	0	0.30053	1	3835	3835		111.65	6.9017	1	2214100	+		28863	23567	19887	19927	33384	33384					0.0917525941989652
ITKDFPQYF	9	Unmodified	_ITKDFPQYF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.7933959960938	2	579.795132	1157.57571	-0.24768	-0.0001436	-0.94821	-0.00054976	-1.1959	-0.00069337	579.7945223098751	62.553	0.47731	62.332	61.965	62.442	-0.22097					29	12	3	0	0	0	0.14181	1	7046	7046		101.25	29.957	1	1980200			28864	6183;18381	19888	19928	33385	33385					0.003226097574497544
ITKDFPQYF	9	Unmodified	_ITKDFPQYF_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.7936401367188	2	579.795132	1157.57571	-0.86067	-0.00049902	0.10314	5.98E-05	-0.75754	-0.00043922	579.7950975067162	62.605	0.4618	62.346	62.057	62.518	-0.25824					26	12	3	0	0	0	0.065	1	7041	7041		123.21	16.525	1	1934900			28865	6183;18381	19888	19928	33386	33386					0.003226097574497544
ITKDIIGDI	9	Unmodified	_ITKDIIGDI_					0	0	0			REV__ENST00000495743.1_1_X:16737946-16754363:+|nuORF	REV__ENST00000495743.1_1_X:16737946-16754363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7641906738281	2	494.289682	986.564812	1.7076	0.00084405	-1.6288	-0.00080508	0.078829	3.8964E-05	494.2888183653269	74.405	1.1208	74.405	73.955	75.076	0					43	26	2	0	0	0	0.024313	1	9103	9103		42.864	3.6114	1	201520	+		28866	26411	19889	19929	33387	33387					0.07099207383191697
ITKDRSGSVI	10	Unmodified	_ITKDRSGSVI_					0	0	0			REV__ENST00000502890.5_1_5:180667315-180668686:-|nuORF	REV__ENST00000502890.5_1_5:180667315-180668686:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.3294677734375	2	538.308938	1074.60332	0.02506	1.349E-05	-4.1597	-0.0022392	-4.1347	-0.0022257	538.3064018267241	81.59	0.42058	81.361	81.229	81.65	-0.2289					16	9	2	0	0	0	0.03519	1	9839	9839		47.96	0	1	113940	+		28867	28627	19890	19930	33388	33388					0.06900513017717458
ITKDVVLQW	9	Unmodified	_ITKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;TNIK|p.R1270W|1|0.11|ENSG00000154310|chr3:171066627-171066627|G/A|missense_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3189086914062	2	551.318774	1100.623	-0.31998	-0.00017641	-0.034358	-1.8942E-05	-0.35434	-0.00019535	551.3186415840537	64.158	0.87326	63.931	63.624	64.497	-0.22773					63	21	4	0	0	0	0.013337	4	7273	7264;7273;7286;7298		181.41	59.231	1	6109900			28868	6402;1444	19891	19931	33389;33390;33391;33392	33390					0.07670889028463534
ITKDVVLQW	9	Unmodified	_ITKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;TNIK|p.R1270W|1|0.11|ENSG00000154310|chr3:171066627-171066627|G/A|missense_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3189697265625	2	551.318774	1100.623	-0.027229	-1.5012E-05	-0.39049	-0.00021529	-0.41772	-0.0002303	551.3184938717968	64.174	0.5957	63.981	63.638	64.234	-0.19243					49	14	4	0	0	0	0.013946	4	7289	7268;7276;7289;7302		199.7	46.596	1	6508600			28869	6402;1444	19891	19931	33393;33394;33395;33396	33395					0.07670889028463534
ITKDVVLQW	9	Unmodified	_ITKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;TNIK|p.R1270W|1|0.11|ENSG00000154310|chr3:171066627-171066627|G/A|missense_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.318359375	2	551.318774	1100.623	-0.33441	-0.00018437	-0.12908	-7.1166E-05	-0.4635	-0.00025553	551.3186098901547	64.234	0.74233	63.978	63.603	64.346	-0.25563					56	18	4	0	0	0	0.01388	4	7301	7266;7276;7289;7301		199.7	51.661	1	7030400			28870	6402;1444	19891	19931	33397;33398;33399;33400	33400					0.07670889028463534
ITKDVVLQW	9	Unmodified	_ITKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;TNIK|p.R1270W|1|0.11|ENSG00000154310|chr3:171066627-171066627|G/A|missense_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.318774	1100.623	1.3184	0.00072688	-6.0576	-0.0033396	-4.7391	-0.0026128	551.3160209614744	63.796	0.46711	63.796	63.595	64.062	0	-0.10424	-0.0061124	NaN	181.41	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436550			28871	6402;1444	19891	19931							0.07670889028463534
ITKDVVLQW	9	Unmodified	_ITKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;TNIK|p.R1270W|1|0.11|ENSG00000154310|chr3:171066627-171066627|G/A|missense_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.318774	1100.623	-0.33926	-0.00018704	-5.2962	-0.0029199	-5.6354	-0.0031069	551.3164876824025	64.077	0.75867	63.826	63.372	64.13	-0.25141	-0.07406	-0.0052729	NaN	181.41	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501600			28872	6402;1444	19891	19931							0.07670889028463534
ITKDVVLQW	9	Unmodified	_ITKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;TNIK|p.R1270W|1|0.11|ENSG00000154310|chr3:171066627-171066627|G/A|missense_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.318774	1100.623	1.4507	0.0007998	-7.5292	-0.004151	-6.0785	-0.0033512	551.315913135216	63.843	0.67886	63.888	63.438	64.117	0.045502	-0.011973	-0.0077351	NaN	181.41	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521360			28873	6402;1444	19891	19931							0.07670889028463534
ITKFLRIF	8	Unmodified	_ITKFLRIF_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7321166992188	2	519.328945	1036.64334	0.2976	0.00015455	-4.2628	-0.0022138	-3.9652	-0.0020592	519.3264436053914	57.403	0.53334	57.229	56.964	57.497	-0.1749					29	13	3	0	0	0	0.027866	1	6407	6407		24.203	0	1	313680			28874	6987	19892	19932	33401	33401					0.12648104478921596
ITKGQLLHPE	10	Unmodified	_ITKGQLLHPE_					0	0	0		ENST00000506463.1_1_5:38710817-38711491:-|nuORF	ENST00000506463.1_1_5:38710817-38711491:-|nuORF	ENST00000506463.1_1_5:38710817-38711491:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.3029174804688	2	568.327131	1134.63971	-0.43456	-0.00024697	-1.2284	-0.00069813	-1.663	-0.0009451	568.3261761383432	49.072	0.53498	49.072	48.864	49.399	0					17	14	2	0	0	0	0.03519	1	5091	5091		22.58	0	1	128280			28875	15742	19893	19933	33402	33402					0.07777389914440391
ITKGQLLHPE	10	Unmodified	_ITKGQLLHPE_					0	0	0		ENST00000506463.1_1_5:38710817-38711491:-|nuORF	ENST00000506463.1_1_5:38710817-38711491:-|nuORF	ENST00000506463.1_1_5:38710817-38711491:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	568.327131	1134.63971	-0.39639	-0.00022528	-1.2264	-0.00069701	-1.6228	-0.00092229	568.3264212859261	49.268	0.2841	49.115	48.97	49.254	-0.15277	0.039009	-0.00087774	NaN	49.536	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147910			28876	15742	19893	19933							0.07777389914440391
ITKGQLLHPE	10	Unmodified	_ITKGQLLHPE_					0	0	0		ENST00000506463.1_1_5:38710817-38711491:-|nuORF	ENST00000506463.1_1_5:38710817-38711491:-|nuORF	ENST00000506463.1_1_5:38710817-38711491:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	568.327131	1134.63971	-1.8211	-0.001035	1.0763	0.00061171	-0.74478	-0.00042328	568.3273017608228	48.966	0.2914	49.041	48.877	49.169	0.074196	-0.035447	0.0017397	NaN	49.536	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153100			28877	15742	19893	19933							0.07777389914440391
ITKLKTDL	8	Unmodified	_ITKLKTDL_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2637939453125	2	466.294768	930.574983	-0.16771	-7.8203E-05	-0.48151	-0.00022453	-0.64922	-0.00030273	466.2947412554666	37.898	0.46429	37.718	37.443	37.908	-0.17929					16	12	2	0	0	0	0.027866	1	3054	3054		40.778	5.1599	1	306770			28878	5686	19894	19934	33403	33403					0.10691815108407354
ITKLSILAL	9	Unmodified	_ITKLSILAL_					0	0	0		ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2921142578125	2	486.328611	970.642668	0.51734	0.0002516	-0.35615	-0.00017321	0.16119	7.8393E-05	486.3282800253892	77.819	0.94383	77.608	77.376	78.32	-0.21087					54	22	3	0	0	0	0.024337	1	9625	9625		67.494	29.682	1	859820			28879	11876	19895	19935	33404	33404					0.15617265039213635
ITKLSILAL	9	Unmodified	_ITKLSILAL_					0	0	0		ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.328611	970.642668	-0.1006	-4.8926E-05	0.26512	0.00012894	0.16452	8.0011E-05	486.32858742160266	77.811	0.80688	77.549	77.27	78.077	-0.26202	-0.022368	7.068E-05	NaN	49.536	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527740			28880	11876	19895	19935							0.15617265039213635
ITKLSILAL	9	Unmodified	_ITKLSILAL_					0	0	0		ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.328611	970.642668	0.82992	0.00040361	-0.70502	-0.00034287	0.1249	6.0741E-05	486.3281030120862	77.714	0.84758	77.472	77.233	78.081	-0.24232	-0.099814	-0.00087294	NaN	49.536	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771510			28881	11876	19895	19935							0.15617265039213635
ITKLSILAL	9	Unmodified	_ITKLSILAL_					0	0	0		ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	ENST00000298767.9_1_10:88259585-88259723:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.328611	970.642668	0.021052	1.0238E-05	-0.057582	-2.8004E-05	-0.03653	-1.7765E-05	486.32837678487965	77.541	0.93818	77.379	77.225	78.164	-0.16196	-0.1931	-0.0002432	NaN	49.536	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763590			28882	11876	19895	19935							0.15617265039213635
ITKNFATN	8	Unmodified	_ITKNFATN_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.7446594238281	2	454.745442	907.476331	0.21748	9.8897E-05	-1.5936	-0.00072467	-1.3761	-0.00062577	454.7446096091311	101.75	1.4478	101.58	101.05	102.5	-0.17178					89	33	4	0	0	0	1.0198	1	12611	12611		34.173	0	1	2298900	+		28883	27569	19896	19936	33405	33405					0.01889211863374385
ITKPKVNL	8	Unmodified	_ITKPKVNL_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2340087890625	2	456.797478	911.580402	-0.60922	-0.00027829	0.64069	0.00029267	0.031467	1.4374E-05	456.79775880171786	51.465	0.50211	51.189	50.891	51.393	-0.27643					17	12	2	0	0	0	0.027866	1	5239	5239		23.042	10.083	1	176840	+		28884	37256	19897	19937	33406	33406					0.12107538690884212
ITKPKVNL	8	Unmodified	_ITKPKVNL_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.797478	911.580402	1.0253	0.00046835	-0.70175	-0.00032056	0.32354	0.00014779	456.7970730301755	51.209	0.50346	51.098	50.823	51.327	-0.11163	-0.046689	-0.00046299	NaN	27.882	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146410	+		28885	37256	19897	19937							0.12107538690884212
ITKPKVNL	8	Unmodified	_ITKPKVNL_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.797478	911.580402	1.149	0.00052486	-1.0174	-0.00046474	0.13161	6.0119E-05	456.79696396496854	51.328	0.43238	51.147	50.908	51.34	-0.18071	0.0024085	-0.00075134	NaN	27.882	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152030	+		28886	37256	19897	19937							0.12107538690884212
ITKPRALLS	9	Unmodified	_ITKPRALLS_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3076171875	2	499.821484	997.628415	-0.0070227	-3.5101E-06	3.1377	0.0015683	3.1307	0.0015648	500.32234083916893	73.301	0.12545	73.03	72.925	73.05	-0.27126					4	2	2	0	0	0	0.024541	1	8902	8902		16.473	0	1	31089			28887	2581	19898	19938	33407	33407					0.1295061261095043
ITKQRLLGD	9	Unmodified	_ITKQRLLGD_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.314453125	2	522.314023	1042.61349	-0.16174	-8.4479E-05	0.16391	8.5614E-05	0.0021731	1.1351E-06	522.3139699214305	45.923	0.62358	45.827	45.564	46.187	-0.096649					49	16	4	0	0	0	0.18915	1	4397	4397		90.777	11.064	1	4293100			28888	8007	19899	19939	33408	33408					0.09389120742957857
ITKQRLLGD	9	Unmodified	_ITKQRLLGD_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.3139038085938	2	522.314023	1042.61349	-0.094176	-4.919E-05	0.097158	5.0747E-05	0.0029821	1.5576E-06	522.313932304631	46.109	0.75551	45.848	45.557	46.313	-0.26118					58	19	4	0	0	0	0.27161	1	4415	4415		79.451	0	1	3410200			28889	8007	19899	19939	33409	33409					0.09389120742957857
ITKQRLLGD	9	Unmodified	_ITKQRLLGD_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.314208984375	2	522.314023	1042.61349	-0.70101	-0.00036614	0.52892	0.00027626	-0.17209	-8.9884E-05	522.3141640631737	46.018	0.77145	45.815	45.458	46.23	-0.20226					54	20	4	0	0	0	0.27161	1	4403	4403		79.451	5.4763	1	3656800			28890	8007	19899	19939	33410	33410					0.09389120742957857
ITKRAWSL	8	Unmodified	_ITKRAWSL_					0	0	0			REV__ENST00000381297.9_1_X:1582972-1583200:-|nuORF	REV__ENST00000381297.9_1_X:1582972-1583200:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79058837890625	2	487.792727	973.5709	-0.96209	-0.0004693	-3.3876	-0.0016524	-4.3497	-0.0021217	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.89627	1	10409	10409		51.335	7.2187	1	1891000	+		28891	31511	19900	19940	33411	33411					0.08305770405377189
ITKRGLPK	8	Unmodified	_ITKRGLPK_					0	0	0		ENST00000511884.6_2_4:31144502-31144637:+|nuORF	ENST00000511884.6_2_4:31144502-31144637:+|nuORF	ENST00000511884.6_2_4:31144502-31144637:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.8880615234375	2	456.803094	911.591636	-0.16407	-7.4949E-05	0.038261	1.7478E-05	-0.12581	-5.7471E-05	456.8029812339052	36.176	1.9003	36.214	35.927	37.827	0.03804					90	51	3	0	0	0	0.027866	1	3052	3052		47.916	18.074	1	509520			28892	15846	19901	19941	33412	33412					0.1323036078504174
ITKRYYLI	8	Unmodified	_ITKRYYLI_					0	0	0			REV__nc|ENSG00000102038|P28370-2|SMARCA1	REV__nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7613525390625	2	535.32386	1068.63317	-0.63625	-0.0003406	3.4619	0.0018532	2.8257	0.0015126	535.3255467471857	77.819	0.63907	77.657	77.398	78.037	-0.16196					36	14	3	0	0	0	0.027866	1	9241	9241		28.254	2.8041	1	1095700	+		28893	21280	19902	19942	33413	33413					0.10159496753703934
ITKTEVETF	9	Unmodified	_ITKTEVETF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant;ITPR3|p.D722Efs*12|1|0.07|ENSG00000096433|chr6:33669133-33669133|C/-|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.791748046875	2	534.284597	1066.55464	-1.4497	-0.00077456	2.4149	0.0012903	0.96523	0.00051571	534.2857192197818	44.417	0.31312	44.198	44.006	44.319	-0.21939					17	8	3	0	0	0	0.024181	1	4138	4138		72.879	14.097	1	914640			28894	2051	19903	19943	33414	33414					0.02402599657943938
ITKTLTQC	8	Carbamidomethyl (C)	_ITKTLTQC(Carbamidomethyl (C))_	ITKTLTQC(1)		ITKTLTQC(82)		0	1	0			REV__nc|ENSG00000065361|P21860-4|ERBB3;REV__ERBB3|p.E200D|1|0.23|ENSG00000065361|chr12:56087629-56087629|A/T|missense_variant	REV__nc|ENSG00000065361|P21860-4|ERBB3	MSMS	OPSCC_40_ClassI_Rep-3	6	482.7623291015625	2	482.760235	963.505917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.561	1	87.424	86.924	87.924	-0.13734								0	0	0	0.33041	1	10641	10641		82.305	13.82	1		+		28895	20309;36009	19904	19944	33415	33415	259				0.022704078172068876
ITKTTIHQL	9	Unmodified	_ITKTTIHQL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.8169555664062	2	527.816399	1053.61824	-0.1473	-7.7748E-05	1.7097	0.00090239	1.5624	0.00082465	527.8173996444896	32.205	0.56094	31.969	31.697	32.258	-0.23667					25	11	3	0	0	0	0.28753	1	2204	2204		77.318	20.597	1	971180			28896	2053	19905	19945	33416	33416					0.09358004885712035
ITKTTIHQL	9	Unmodified	_ITKTTIHQL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.8176879882812	2	527.816399	1053.61824	0.033949	1.7919E-05	1.54	0.00081286	1.574	0.00083077	527.817365110271	32.223	0.64935	32.03	31.728	32.377	-0.19261					31	14	3	0	0	0	0.18994	1	2197	2197		90.601	13.283	1	781310			28897	2053	19905	19945	33417	33417					0.09358004885712035
ITKTTIHQL	9	Unmodified	_ITKTTIHQL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.816399	1053.61824	-0.30156	-0.00015917	1.1205	0.00059143	0.81897	0.00043226	527.8169522087979	32.211	0.67188	32.053	31.651	32.323	-0.15772	0.035675	-0.00019744	NaN	90.601	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	972240			28898	2053	19905	19945							0.09358004885712035
ITLCLYRD	8	Unmodified	_ITLCLYRD_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7757568359375	2	498.762778	995.511002	0.25481	0.00012709	0.18827	9.3903E-05	0.44308	0.00022099	498.7627068567206	100.84	0.88589	100.84	100.53	101.42	0					40	20	3	0	0	0	0.027866	1	12885	12885		57.811	9.8957	1	430460			28899	1460	19906	19946	33418	33418					0.013067116798310963
ITLDLIRVL	9	Unmodified	_ITLDLIRVL_					0	0	0		nc|ENSG00000068784|Q8N5C6-2|SRBD1;ENSG00000068784|ENST00000263736|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7481689453125	2	528.344792	1054.67503	0.17444	9.2164E-05	-0.27645	-0.00014606	-0.10201	-5.3899E-05	528.3445612023851	85.462	0.79379	85.267	84.927	85.721	-0.19508					32	18	3	0	0	0	0.024337	1	10337	10337		41.427	6.2259	1	170410			28900	1391	19907	19947	33419	33419					0.14988052442231492
ITLDLIRVL	9	Unmodified	_ITLDLIRVL_					0	0	0		nc|ENSG00000068784|Q8N5C6-2|SRBD1;ENSG00000068784|ENST00000263736|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7484130859375	2	528.344792	1054.67503	0.4748	0.00025086	-0.52152	-0.00027554	-0.046722	-2.4685E-05	528.3443906289432	85.385	0.63008	85.247	84.988	85.618	-0.13752					22	14	2	0	0	0	0.024319	1	10311	10311		39.253	6.4404	1	176220			28901	1391	19907	19947	33420	33420					0.14988052442231492
ITLDRRLA	8	Unmodified	_ITLDRRLA_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2974853515625	2	479.295633	956.576714	0.79732	0.00038215	-1.1968	-0.00057363	-0.3995	-0.00019148	479.29488529898623	102.08	0.50771	101.95	101.72	102.23	-0.1293					22	12	2	0	0	0	1.0009	1	12687	12687		37.159	2.9866	1	193090	+		28902	21800	19908	19948	33421	33421					0.0966886891702643
ITLECLRTW	9	Unmodified	_ITLECLRTW_					0	0	0			REV__ENSG00000138780|ENST00000515279|GSTCD	REV__ENSG00000138780|ENST00000515279|GSTCD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8165283203125	2	567.802434	1133.59032	-0.056266	-3.1948E-05	0.34383	0.00019523	0.28757	0.00016328	567.8023963237841	43.02	0.41071	42.908	42.735	43.145	-0.11253					12	10	2	0	0	0	0.023007	1	3889	3889		76.774	14.667	1	108320	+		28903	23900	19909	19949	33422	33422					0.02886358633963937
ITLECLRTW	9	Unmodified	_ITLECLRTW_					0	0	0			REV__ENSG00000138780|ENST00000515279|GSTCD	REV__ENSG00000138780|ENST00000515279|GSTCD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.802434	1133.59032	-0.23284	-0.00013221	-0.96383	-0.00054727	-1.1967	-0.00067947	567.8022327589622	43.23	0.33937	42.993	42.759	43.099	-0.23737	0.039325	-0.0010327	NaN	76.774	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155270	+		28904	23900	19909	19949							0.02886358633963937
ITLECLRTW	9	Unmodified	_ITLECLRTW_					0	0	0			REV__ENSG00000138780|ENST00000515279|GSTCD	REV__ENSG00000138780|ENST00000515279|GSTCD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	567.802434	1133.59032	-0.73844	-0.00041929	1.4528	0.0008249	0.71436	0.00040561	567.8033045613913	43.186	0.33156	42.96	42.873	43.205	-0.22597	0.0063503	0.0017116	NaN	76.774	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73439	+		28905	23900	19909	19949							0.02886358633963937
ITLEFRAEA	9	Unmodified	_ITLEFRAEA_					0	0	0		ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM;nc|ENSG00000164318|Q63HQ2-4|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2863159179688	2	525.284931	1048.55531	-1.2421	-0.00065243	4.1209	0.0021646	2.8788	0.0015122	525.2869518597158	54.41	0.93736	54.41	54.179	55.116	0					46	26	2	0	0	0	0.19099	1	5950	5950		90.37	8.1293	1	3169300			28906	7260	19910	19950	33423	33423					0.03297439097673305
ITLEFRAEA	9	Unmodified	_ITLEFRAEA_					0	0	0		ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM;nc|ENSG00000164318|Q63HQ2-4|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.284931	1048.55531	-0.26556	-0.00013949	3.7231	0.0019557	3.4576	0.0018162	525.2866829850198	54.543	0.77437	54.392	54.12	54.894	-0.15036	0.026953	-7.0728E-05	NaN	90.37	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3524900			28907	7260	19910	19950							0.03297439097673305
ITLEFRAEA	9	Unmodified	_ITLEFRAEA_					0	0	0		ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM;nc|ENSG00000164318|Q63HQ2-4|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.284931	1048.55531	0.76166	0.00040009	2.6516	0.0013929	3.4133	0.0017929	525.2860191036514	54.22	1.0381	54.318	53.842	54.881	0.098015	-0.04713	-0.0011964	NaN	90.37	68	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2852300			28908	7260	19910	19950							0.03297439097673305
ITLEIFASR	9	Unmodified	_ITLEIFASR_					0	0	0		ENST00000313956.4_1_19:53432472-53432580:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3032836914062	2	525.303124	1048.5917	-0.22159	-0.0001164	-0.06543	-3.437E-05	-0.28702	-0.00015077	525.3029220680563	72.449	1.459	72.172	71.868	73.327	-0.2769					79	34	4	0	0	0	0.17822	1	8472	8472		93.195	5.0185	1	1446000			28909	12110	19911	19951	33424	33424					0.06934315994362805
ITLEIFASR	9	Unmodified	_ITLEIFASR_					0	0	0		ENST00000313956.4_1_19:53432472-53432580:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	ENST00000313956.4_1_19:53432472-53432580:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.303466796875	2	525.303124	1048.5917	-0.29147	-0.00015311	-0.14315	-7.5195E-05	-0.43461	-0.0002283	525.3028495497366	72.215	1.251	72.017	71.748	72.999	-0.19811					62	29	4	0	0	0	0.19099	1	8460	8460		90.37	2.6155	1	1923100			28910	12110	19911	19951	33425	33425					0.06934315994362805
ITLEMQTKI	9	Oxidation (M)	_ITLEM(Oxidation (M))QTKI_		ITLEM(1)QTKI		ITLEM(120)QTKI	0	0	1			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.3142700195312	2	546.8021	1091.58965	-1.2035	-0.00065806	-2.2794	-0.0012464	-3.4829	-0.0019045	546.800798301522	45.841	0.46761	45.638	45.425	45.892	-0.20226					23	12	2	0	0	0	0.020937	1	4339	4339		122.18	25.986	1	550970	+		28911	26438	19912	19952	33426	33426		781			0.04751519194269349
ITLESQHLV	9	Unmodified	_ITLESQHLV_					0	0	0		ENST00000309982.9_2_8:104241271-104241349:+|nuORF	ENST00000309982.9_2_8:104241271-104241349:+|nuORF	ENST00000309982.9_2_8:104241271-104241349:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3114013671875	2	520.292756	1038.57096	-0.24436	-0.00012714	-0.78929	-0.00041066	-1.0336	-0.0005378	520.2923971584203	52.829	0.48138	52.921	52.71	53.191	0.091938					20	12	2	0	0	0	0.024436	1	5638	5638		23.042	0	1	373600			28912	12051	19913	19953	33427	33427					0.053217256147036096
ITLFAPFR	8	Unmodified	_ITLFAPFR_					0	0	0			REV__ENST00000522167.5_1_8:120581579-120581609:-|nuORF	REV__ENST00000522167.5_1_8:120581579-120581609:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7840270996094	2	482.78437	963.554188	0.40478	0.00019542	-0.31731	-0.00015319	0.087472	4.223E-05	482.7840246086426	73.006	0.88227	72.725	72.385	73.267	-0.28124					65	21	4	0	0	0	0.845	1	8860	8860		55.504	0	1	1879100	+		28913	34334	19914	19954	33428	33428					0.07095269519425074
ITLGDVFKM	9	Unmodified	_ITLGDVFKM_					0	0	0			REV__ENST00000433853.1_1_3:183867695-183868220:+|nuORF	REV__ENST00000433853.1_1_3:183867695-183868220:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7713623046875	2	512.280803	1022.54705	0.30675	0.00015714	-0.99614	-0.0005103	-0.68939	-0.00035316	512.279211378645	19.326	0.83972	19.165	18.836	19.676	-0.16079					32	16	4	0	0	0	0.024381	1	467	467		21.96	0	1	81400	+		28914	32413	19915	19955	33429	33429					0.03668168856700049
ITLGPRAL	8	Unmodified	_ITLGPRAL_					0	0	0			REV__nc|ENSG00000169220|O43566-4|RGS14	REV__nc|ENSG00000169220|O43566-4|RGS14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7691650390625	2	420.76872	839.522887	0.50302	0.00021165	-0.19421	-8.1716E-05	0.30881	0.00012994	420.7684988776988	58.624	1.4237	58.624	57.91	59.333	0					91	38	4	0	0	0	0.53523	1	6659	6659		82.305	2.3658	1	2788200	+		28915	26335	19916	19956	33430	33430					0.09670696485306962
ITLGRLKII	9	Unmodified	_ITLGRLKII_					0	0	0		ENST00000586362.1_1_17:43714735-43723402:+|nuORF	ENST00000586362.1_1_17:43714735-43723402:+|nuORF	ENST00000586362.1_1_17:43714735-43723402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.818359375	2	513.855327	1025.6961	0.18073	9.2871E-05	1.0909	0.00056054	1.2716	0.00065341	513.8561842529914	72.215	0.28186	72.215	72.091	72.373	0					10	6	2	0	0	0	0.023454	1	8798	8798		71.877	0	1	58120			28916	17241	19917	19957	33431	33431					0.18428062541738655
ITLHLPSLVDL	11	Unmodified	_ITLHLPSLVDL_					0	0	0			REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF	REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.5789489746094	3	407.579818	1219.71762	0.52512	0.00021403	-2.2499	-0.000917	-1.7247	-0.00070297	407.57886276266305	34.334	1.7	34.384	34.047	35.747	0.050255					109	43	5	0	0	0	0.98082	1	2513	2513		41.08	3.5719	1	4101700	+		28917	34013	19918	19958	33432	33432					0.11655402779820179
ITLHPEDESFM	11	Unmodified	_ITLHPEDESFM_					0	0	0			REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2480163574219	3	440.204311	1317.5911	0.69932	0.00030784	2.7076	0.0011919	3.4069	0.0014997	440.20550927798564	33.299	0.66256	33.355	33.07	33.732	0.056568					28	17	2	0	0	0	0.024736	1	2303	2303		14.086	0	1	225640	+		28918	26251	19919	19959	33433	33433					-0.05498891507659209
ITLILDKD	8	Unmodified	_ITLILDKD_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2866516113281	2	465.778951	929.543348	-0.17387	-8.0986E-05	-2.2905	-0.0010668	-2.4643	-0.0011478	465.7778080401613	94.147	1.2022	94.147	93.848	95.05	0					62	28	3	0	0	0	0.027866	1	11928	11928		37.159	15.199	1	1086400	+		28919	20079	19920	19960	33434	33434					0.07575822354465345
ITLILDKD	8	Unmodified	_ITLILDKD_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	465.778951	929.543348	-0.62433	-0.0002908	-1.8855	-0.00087825	-2.5099	-0.001169	465.7780123363889	94.333	1.1034	94.195	93.834	94.937	-0.13779	0.01649	0.00044834	NaN	37.159	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	803130	+		28920	20079	19920	19960							0.07575822354465345
ITLILDKD	8	Unmodified	_ITLILDKD_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	465.778951	929.543348	0.41075	0.00019132	-2.8391	-0.0013224	-2.4284	-0.0011311	465.7776262825221	94.302	0.80025	94.18	93.798	94.598	-0.12215	0.0010458	-0.00043999	NaN	37.159	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	599230	+		28921	20079	19920	19960							0.07575822354465345
ITLILDKD	8	Unmodified	_ITLILDKD_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.778951	929.543348	-0.27431	-0.00012777	-2.3802	-0.0011087	-2.6546	-0.0012364	465.7778754644308	94.337	0.8457	94.189	93.869	94.715	-0.14771	0.010811	-1.2503E-05	NaN	37.159	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	552810	+		28922	20079	19920	19960							0.07575822354465345
ITLLEGAVGV	10	Unmodified	_ITLLEGAVGV_					0	0	0			REV__ENSG00000165996|ENST00000361271|HACD1	REV__ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.29132080078125	2	486.292225	970.569897	-0.35508	-0.00017267	-0.38657	-0.00018798	-0.74165	-0.00036066	486.2919999455696	60.048	1.7195	59.848	59.281	61	-0.20016					130	45	6	0	0	0	0.75995	1	6840	6840		63.306	1.1989	1	23652000	+		28923	25954	19921	19961	33435	33435					0.08343511245823265
ITLLKKAHS	9	Unmodified	_ITLLKKAHS_					0	0	0			REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.2525939941406	2	505.821484	1009.62842	-0.43282	-0.00021893	-0.58372	-0.00029526	-1.0165	-0.00051419	505.8210239524679	61.653	0.79256	61.653	61.216	62.009	0					41	20	3	0	0	0	0.024021	1	7106	7106		58.782	19.76	1	395070	+		28924	33186	19922	19962	33436	33436					0.12398612610934379
ITLLKKAHS	9	Unmodified	_ITLLKKAHS_					0	0	0			REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.821484	1009.62842	0.032051	1.6212E-05	-1.0822	-0.00054739	-1.0501	-0.00053118	505.8206454083168	61.944	0.60829	61.718	61.336	61.945	-0.22663	0.04317	-0.00040508	NaN	58.782	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461300	+		28925	33186	19922	19962							0.12398612610934379
ITLLKKAHS	9	Unmodified	_ITLLKKAHS_					0	0	0			REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.821484	1009.62842	-0.17575	-8.8898E-05	-0.49998	-0.0002529	-0.67573	-0.0003418	505.82103123290096	61.582	0.60136	61.653	61.355	61.956	0.071129	-0.02174	0.00018389	NaN	58.782	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493020	+		28926	33186	19922	19962							0.12398612610934379
ITLLMDEPL	9	Unmodified	_ITLLMDEPL_					0	0	0		ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.3139038085938	2	522.785918	1043.55728	-0.22805	-0.00011922	4.3919	0.002296	4.1638	0.0021768	522.7877440997603	32.387	0.30536	32.15	31.91	32.216	-0.23666					9	6	2	0	0	0	0.024354	1	2234	2234		47.916	0	1	56062			28927	8617	19923	19963	33437	33437					0.03724731791248814
ITLLTDRSI	9	Unmodified	_ITLLTDRSI_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2697143554688	2	516.308406	1030.60226	-0.38071	-0.00019656	-1.2312	-0.00063565	-1.6119	-0.00083222	516.308247962335	49.141	0.42599	48.988	48.792	49.218	-0.15277					13	11	2	0	0	0	0.024021	1	5053	5053		58.782	0	1	127960	+		28928	28207	19924	19964	33438	33438					0.0881829864881638
ITLRFAESL	9	Unmodified	_ITLRFAESL_					0	0	0			REV__nc|ENSG00000079387|Q9P0U3-2|SENP1;REV__ENST00000551358.1_1_12:48457453-48459429:-|nuORF	REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3038940429688	2	525.303124	1048.5917	0.19601	0.00010297	-0.49448	-0.00025975	-0.29846	-0.00015678	525.3026866993481	72.437	1.4951	72.173	71.799	73.294	-0.26479					81	35	4	0	0	0	0.22902	1	8509	8509		85.161	4.7062	1	1562200	+		28929	20636;34931	19925	19965	33439	33439					0.06934315994362805
ITLSIHQSVEN	11	Unmodified	_ITLSIHQSVEN_					0	0	0		ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENST00000478631.6_2_1:53460811-53461279:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	620.8324584960938	2	620.830234	1239.64592	-0.97581	-0.00060581	4.0332	0.0025039	3.0574	0.0018981	620.8327239821605	61.657	0.66208	61.728	61.434	62.096	0.071125					60	17	4	0	0	0	0.2308	2	7085	7085;7098		96.034	2.8904	1	13074000			28930	15152	19926	19966	33440;33441	33440					0.035678633553061445
ITLTFAKSY	9	Unmodified	_ITLTFAKSY_					0	0	0			REV__ENST00000472031.1_1_17:40118826-40125939:+|nuORF	REV__ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7932739257812	2	522.292225	1042.5699	-0.72571	-0.00037903	-2.5715	-0.0013431	-3.2972	-0.0017221	522.2901673705205	37.957	1.0312	37.735	37.427	38.458	-0.22149					66	28	5	0	0	0	0.56934	1	3076	3076		54.776	1.4249	1	2419900	+		28931	26807	19927	19967	33442	33442					0.050315112458065414
ITLTKALLP	9	Unmodified	_ITLTKALLP_					0	0	0		ENSG00000184544|ENST00000571134|DHRS7C;nc|ENSG00000184544|A6NNS2|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2977294921875	2	485.320786	968.627018	-0.50619	-0.00024566	1.0655	0.00051713	0.55934	0.00027146	485.3210470850606	66.947	0.93704	66.666	66.499	67.436	-0.28149					31	23	2	0	0	0	0.024292	1	8040	8040		40.778	0	1	1370000			28932	9348	19928	19968	33443	33443					0.14144978522176643
ITLTRILNK	9	Unmodified	_ITLTRILNK_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3497314453125	2	536.347866	1070.68118	0.070923	3.8039E-05	3.7027	0.0019859	3.7736	0.002024	536.3496685332439	89.082	2.6778	89.061	88.015	90.692	-0.021645					150	63	4	0	0	0	0.28753	1	11244	11244		77.318	0.54344	1	1214000			28933	6612	19929	19969	33444	33444					0.1486657067375745
ITLTRILNK	9	Unmodified	_ITLTRILNK_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.349365234375	2	536.347866	1070.68118	0.019356	1.0381E-05	3.491	0.0018724	3.5103	0.0018828	536.3495684200856	87.602	1.0125	87.466	87.136	88.148	-0.13613					65	24	4	0	0	0	0.45795	1	10663	10663		62.107	3.8775	1	932110			28934	6612	19929	19969	33445	33445					0.1486657067375745
ITLVATKPEKL	11	Unmodified	_ITLVATKPEKL_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9228515625	3	404.923585	1211.74892	0.50474	0.00020438	-3.0148	-0.0012208	-2.51	-0.0010164	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.017	1	1336	1336		33.039	0.28887	1	35253000			28935	6690	19930	19970	33446	33446					0.15151975813887475
ITMEKPLGL	9	Oxidation (M)	_ITM(Oxidation (M))EKPLGL_		ITM(1)EKPLGL		ITM(110)EKPLGL	0	0	1			REV__ENSG00000137707|ENST00000692032|BTG4	REV__ENSG00000137707|ENST00000692032|BTG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2841796875	2	509.286085	1016.55762	-0.13883	-7.0704E-05	-3.2464	-0.0016533	-3.3852	-0.001724	509.2843057709085	69.987	0.98575	69.736	69.196	70.182	-0.25063					73	23	5	0	0	0	0.096521	1	8139	8139		111.65	8.8749	1	2425200	+		28936	23775	19931	19971	33447	33447		702			0.05000151511126205
ITMGPKGKTVI	11	Unmodified	_ITMGPKGKTVI_					0	0	0		ENST00000447985.1_1_21:30260983-30261475:-|nuORF	ENST00000447985.1_1_21:30260983-30261475:-|nuORF	ENST00000447985.1_1_21:30260983-30261475:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.8414916992188	2	572.841559	1143.66857	-0.66418	-0.00038047	-2.1725	-0.0012445	-2.8367	-0.001625	572.8401055157483	76.703	0.77795	76.703	76.431	77.209	0					32	18	4	0	0	0	1.0017	1	9470	9470		36.447	0.82846	1	528640			28937	14477	19932	19972	33448	33448					0.10247791219194369
ITMKRHLI	8	Unmodified	_ITMKRHLI_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.8085632324219	2	506.310229	1010.60591	-0.49288	-0.00024955	1.0558	0.00053455	0.56289	0.000285	506.31074989508113	57.954	0.62208	57.721	57.2	57.822	-0.23363					24	15	2	0	0	0	0.027866	1	6336	6336		26.796	9.4311	1	927250			28938	1092	19933	19973	33449	33449					0.10102689941686549
ITMTDSWSL	9	Unmodified	_ITMTDSWSL_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000436990.2_1_22:23654089-23657706:+|nuORF	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.2515258789062	2	527.2497	1052.48485	0.10692	5.6375E-05	4.0785	0.0021504	4.1854	0.0022068	527.251399323791	77.418	1.1764	77.156	76.771	77.948	-0.26202					61	28	3	0	0	0	0.13494	1	9194	9194		102.77	12.404	1	3102000			28939	9572	19934	19974	33450	33450					-0.03929602282300948
ITMTDSWSL	9	Unmodified	_ITMTDSWSL_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000436990.2_1_22:23654089-23657706:+|nuORF	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	527.2497	1052.48485	0.14609	7.7027E-05	2.8408	0.0014978	2.9869	0.0015748	527.2511793991628	77.152	0.59464	77.165	76.939	77.533	0.013504	0.048573	-0.00036327	NaN	102.77	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1150100			28940	9572	19934	19974							-0.03929602282300948
ITMTDSWSL	9	Unmodified	_ITMTDSWSL_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000436990.2_1_22:23654089-23657706:+|nuORF	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	527.2497	1052.48485	-0.33608	-0.0001772	3.5556	0.0018747	3.2195	0.0016975	527.2514979515455	77.215	0.86945	77.053	76.784	77.653	-0.16196	-0.063008	0.00039041	NaN	102.77	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2608700			28941	9572	19934	19974							-0.03929602282300948
ITNATHIHF	9	Unmodified	_ITNATHIHF_					0	0	0			REV__ENST00000271450.10_1_1:161489050-161489206:+|nuORF	REV__ENST00000271450.10_1_1:161489050-161489206:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.275146484375	2	527.277441	1052.54033	-1.1843	-0.00062445	-3.3142	-0.0017475	-4.4985	-0.0023719	527.2756839155551	24.32	0.88416	24.32	24.08	24.964	0					41	19	3	0	0	0	0.14024	1	1051	1051		101.6	0.14086	1	1193800	+		28942	29803	19935	19975	33451	33451					0.016159920203108413
ITNATMDLLSG	11	Unmodified	_ITNATMDLLSG_					0	0	0		CON__Q3SZR3	CON__Q3SZR3	CON__Q3SZR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2827758789062	2	568.286814	1134.55907	0.5246	0.00029812	-0.93153	-0.00052938	-0.40693	-0.00023125	568.2867214210055	82.37	0.64487	82.15	81.659	82.304	-0.22016					24	14	2	0	0	0	0.024771	1	9863	9863		35.152	3.6222	1	145800		+	28943	554	19936	19976	33452	33452					-0.002822591907943206
ITNDYYAEL	9	Unmodified	_ITNDYYAEL_					0	0	0			REV__nc|ENSG00000153015|Q6UX04-2|CWC27	REV__nc|ENSG00000153015|Q6UX04-2|CWC27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.7740478515625	2	551.258579	1100.50261	0.60532	0.00033369	-3.701	-0.0020402	-3.0956	-0.0017065	551.2568588146795	55.379	0.56971	55.379	55.216	55.786	0					20	15	2	0	0	0	0.024427	1	6109	6109		42.396	11.892	1	72385	+		28944	24877	19937	19977	33453	33453					-0.04362563755807969
ITNKYQLVF	9	Unmodified	_ITNKYQLVF_					0	0	0		ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.3184204101562	2	563.318774	1124.623	-0.1892	-0.00010658	-0.21615	-0.00012176	-0.40535	-0.00022834	563.3185603946935	61.916	0.79012	61.702	61.416	62.206	-0.21375					59	19	4	0	0	0	0.17845	2	6942	6931;6942		93.143	26.714	1	3698600			28945	1798	19938	19978	33454;33455	33455					0.06566889028476908
ITNKYQLVF	9	Unmodified	_ITNKYQLVF_					0	0	0		ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.3184814453125	2	563.318774	1124.623	-0.81529	-0.00045927	0.25875	0.00014576	-0.55654	-0.00031351	563.3188238227639	61.811	0.94176	61.633	61.287	62.229	-0.17781					69	23	4	0	0	0	0.17845	3	6930	6920;6930;6942		93.143	23.343	1	3990700			28946	1798	19938	19978	33456;33457;33458	33457					0.06566889028476908
ITNKYQLVF	9	Unmodified	_ITNKYQLVF_					0	0	0		ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.3187866210938	2	563.318774	1124.623	-0.20462	-0.00011527	-0.3786	-0.00021327	-0.58322	-0.00032854	563.3184349662704	61.977	0.86811	61.72	61.383	62.251	-0.25725					61	21	5	0	0	0	0.15388	3	6937	6926;6937;6949		98.582	24.327	1	4170500			28947	1798	19938	19978	33459;33460;33461	33460					0.06566889028476908
ITNLGRIVI	9	Unmodified	_ITNLGRIVI_					0	0	0			REV__ENST00000465552.1_1_3:41275683-41277995:+|nuORF	REV__ENST00000465552.1_1_3:41275683-41277995:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.9019470214844	2	499.821484	997.628415	-0.94807	-0.00047386	-0.58657	-0.00029318	-1.5346	-0.00076705	499.8213395952675	43.872	0.53264	43.727	43.461	43.994	-0.14471					17	14	2	0	0	0	0.024487	1	4147	4147		31.955	24.762	1	171710	+		28948	26220	19939	19979	33462	33462					0.1295061261095043
ITNLLAGAY	9	Unmodified	_ITNLLAGAY_					0	0	0		ENST00000503601.1_1_4:2083186-2091962:-|nuORF	ENST00000503601.1_1_4:2083186-2091962:-|nuORF	ENST00000503601.1_1_4:2083186-2091962:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2637023925781	2	468.263468	934.512382	-1.1402	-0.00053392	0.3836	0.00017963	-0.75662	-0.0003543	468.2635060539855	43.696	1.1444	43.476	43.14	44.284	-0.21938					60	31	3	0	0	0	0.59099	1	4039	4039		53.351	0	1	5942200			28949	15692	19940	19980	33463	33463					0.04250669040231969
ITNPDRYSYL	10	Unmodified	_ITNPDRYSYL_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3135375976562	2	621.311677	1240.6088	-1.4993	-0.00093152	4.4058	0.0027374	2.9065	0.0018058	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.80817	1	7672	7672		60.118	1.3363	1	29556000	+		28950	21703	19941	19981	33464	33464					-0.0018780819048060948
ITNSTAKVI	9	Unmodified	_ITNSTAKVI_					0	0	0			REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7809143066406	2	473.782025	945.549496	0.46405	0.00021986	0.63127	0.00029908	1.0953	0.00051894	473.7821932567515	23.747	0.59815	23.545	23.237	23.835	-0.20193					39	13	4	0	0	0	0.62163	1	998	998		51.335	1.3109	1	1591300	+		28951	27823	19942	19982	33465	33465					0.07454340585979935
ITPAAAPELP	10	Unmodified	_ITPAAAPELP_					0	0	0		ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENST00000558902.5_1_15:52548900-52571163:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2834167480469	2	490.276575	978.538597	0.024403	1.1964E-05	-0.35033	-0.00017176	-0.32593	-0.0001598	490.27636576777667	101.4	0.60201	101.4	101.02	101.62	-0.0054474					41	13	4	0	0	0	0.91051	1	12926	12926		53.351	7.3995	1	627060			28952	16763	19943	19983	33466	33466					0.04846938211687757
ITPAHGSH	8	Unmodified	_ITPAHGSH_					0	0	0		nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1	nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1	nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.5701904296875	2	410.209027	818.403501	0.53508	0.00021949	0.36305	0.00014892	0.89812	0.00036842	410.20913812225467	32.233	0.69597	32.233	31.91	32.606	0					23	17	2	0	0	0	0.027866	1	2238	2238		25.45	0	1	139370			28953	18560	19944	19984	33467	33467					-0.01296497139389885
ITPAVPNFSI	10	Unmodified	_ITPAVPNFSI_					0	0	0			REV__nc|ENSG00000152942|O75943-3|RAD17	REV__nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.759033203125	2	529.797675	1057.5808	0.28438	0.00015066	1.0826	0.00057358	1.367	0.00072424	529.7981975796738	85.72	0.74767	85.72	85.082	85.829	0					19	17	2	0	0	0	0.03519	1	10752	10752		52.937	25.054	1	72449	+		28954	24871	19945	19985	33468	33468					0.05430913620079991
ITPAYHVDL	9	Unmodified	_ITPAYHVDL_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.79296875	2	514.7742	1027.53385	0.056318	2.8991E-05	0.88884	0.00045755	0.94516	0.00048654	514.774458148226	71.896	1.9219	71.621	70.922	72.844	-0.27509					56	45	2	0	0	0	0.024405	1	8416	8416		27.882	0	1	345470	+		28955	25379	19946	19986	33469	33469					0.021180540689329064
ITPECRQV	8	Unmodified	_ITPECRQV_					0	0	0		ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7531433105469	2	473.244752	944.474951	-0.075592	-3.5773E-05	1.3143	0.00062196	1.2387	0.00058619	473.2441484784115	35.807	0.26213	35.851	35.741	36.003	0.04406					9	6	2	0	0	0	0.027866	1	2714	2714		16.473	0	1	93057			28956	1901	19947	19987	33470	33470					0.0004925450297150746
ITPEQGGRVV	10	Unmodified	_ITPEQGGRVV_					0	0	0			REV__ENST00000457424.6_2_4:175205091-175205205:+|nuORF	REV__ENST00000457424.6_2_4:175205091-175205205:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.74853515625	2	528.29583	1054.57711	0.56085	0.0002963	1.0595	0.00055975	1.6204	0.00085605	528.2966456240947	84.631	0.50941	84.493	84.238	84.747	-0.13788					22	11	3	0	0	0	0.03519	1	10262	10262		31.53	7.3271	1	86375	+		28957	32808	19948	19988	33471	33471					0.052002438462295686
ITPHTIPHI	9	Unmodified	_ITPHTIPHI_					0	0	0			REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF	REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3134765625	2	514.798009	1027.58147	-0.51202	-0.00026359	-0.59663	-0.00030715	-1.1087	-0.00057073	514.7974162760188	88.64	0.50275	88.469	88.297	88.799	-0.17054					19	11	2	0	0	0	0.024412	1	10787	10787		50.025	11.218	1	166080	+		28958	29879	19949	19989	33472	33472					0.06877753059802671
ITPKRLLD	8	Unmodified	_ITPKRLLD_					0	0	0			REV__nc|ENSG00000196091|Q00872-5|MYBPC1	REV__nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26397705078125	2	478.300384	954.586216	-0.60152	-0.00028771	-0.32955	-0.00015762	-0.93106	-0.00044533	478.30016845288947	37.854	1.6328	37.854	37.269	38.902	0					100	45	4	0	0	0	0.027866	1	3274	3274		18.324	0	1	16605000	+		28959	28125	19950	19990	33473	33473					0.10710637202555517
ITPLDLGARNR	11	Unmodified	_ITPLDLGARNR_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	613.2903442382812	2	613.354211	1224.69387	-1.3851	-0.00084956	-1.2932	-0.00079319	-2.6783	-0.0016427	613.3533224057179	60.998	0.30833	60.792	60.62	60.928	-0.20599					12	7	2	0	0	0	0.024804	1	6821	6821		56.434	12.057	1	117070	+		28960	20217	19951	19991	33474	33474					0.09050982065969038
ITPMIFAKII	10	Unmodified	_ITPMIFAKII_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7;ENST00000568469.5_1_16:19049201-19056398:+|nuORF	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.853515625	2	573.851396	1145.68824	-0.24171	-0.00013871	3.105	0.0017818	2.8633	0.0016431	573.853087943874	64.116	0.82238	63.858	63.601	64.423	-0.25825					57	20	4	0	0	0	1.0271	1	7269	7269		42.396	3.1433	1	3171300			28961	8051	19952	19992	33475	33475					0.12122167229972547
ITPPFNPNVS	10	Unmodified	_ITPPFNPNVS_					0	0	0		nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1	nc|ENSG00000118515|O00141-4|SGK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2722778320312	2	543.284931	1084.55531	-1.4237	-0.00077346	1.6744	0.00090966	0.25069	0.0001362	543.2855698649182	55.569	0.54075	55.354	55.168	55.709	-0.21551					25	14	2	0	0	0	0.03519	1	5928	5928		75.043	18.322	1	873730			28962	3690	19953	19993	33476	33476					0.0164143909764789
ITPSEIIP	8	Unmodified	_ITPSEIIP_					0	0	0		sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.759521484375	2	435.252569	868.490584	-1.0121	-0.00044052	-1.7928	-0.0007803	-2.8049	-0.0012208	435.2517480093719	90.557	1.6167	90.402	89.35	90.967	-0.1552					63	38	3	0	0	0	0.027866	1	10949	10949		13.775	0	1	255290			28963	37945	19954	19994	33477	33477					0.05107864291676378
ITPSRTRP	8	Unmodified	_ITPSRTRP_					0	0	0			REV__ENSG00000118492|ENST00000397944|ADGB	REV__ENSG00000118492|ENST00000397944|ADGB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.29736328125	2	464.272158	926.529764	0.62722	0.0002912	-3.1878	-0.00148	-2.5606	-0.0011888	464.27227699176524	85.004	0.57844	85.004	84.669	85.247	0					30	13	3	0	0	0	0.027866	1	10636	10636		29.15	0	1	133620	+		28964	22408	19955	19995	33478	33478					0.06356009365890714
ITPWQSSFF	9	Unmodified	_ITPWQSSFF_					0	0	0		ENST00000585246.5_1_6:32123472-32133959:+|nuORF;nc|ENSG00000258388|Q9UMR5-2|PPT2;ENSG00000221988|ENST00000324816|PPT2;nc|ENSG00000258388|Q9UMR5-3|PPT2	ENST00000585246.5_1_6:32123472-32133959:+|nuORF	ENST00000585246.5_1_6:32123472-32133959:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.781005859375	2	556.7742	1111.53385	1.0253	0.00057084	-0.80962	-0.00045077	0.21565	0.00012007	556.7729075457864	37.241	0.62715	37.241	37.005	37.632	0					22	16	2	0	0	0	0.024539	1	3021	3021		27.882	3.6795	1	109950			28965	10632	19956	19996	33479	33479					-0.01745945931065762
ITPWQSSFF	9	Unmodified	_ITPWQSSFF_					0	0	0		ENST00000585246.5_1_6:32123472-32133959:+|nuORF;nc|ENSG00000258388|Q9UMR5-2|PPT2;ENSG00000221988|ENST00000324816|PPT2;nc|ENSG00000258388|Q9UMR5-3|PPT2	ENST00000585246.5_1_6:32123472-32133959:+|nuORF	ENST00000585246.5_1_6:32123472-32133959:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	556.7742	1111.53385	0.03949	2.1987E-05	1.0027	0.0005583	1.0422	0.00058029	556.7734348219009	37.136	0.44386	37.073	36.789	37.232	-0.063385	-0.10232	0.0044845	NaN	20.947	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113950			28966	10632	19956	19996							-0.01745945931065762
ITPWQSSFF	9	Unmodified	_ITPWQSSFF_					0	0	0		ENST00000585246.5_1_6:32123472-32133959:+|nuORF;nc|ENSG00000258388|Q9UMR5-2|PPT2;ENSG00000221988|ENST00000324816|PPT2;nc|ENSG00000258388|Q9UMR5-3|PPT2	ENST00000585246.5_1_6:32123472-32133959:+|nuORF	ENST00000585246.5_1_6:32123472-32133959:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	556.7742	1111.53385	-0.68584	-0.00038186	-6.4802	-0.003608	-7.1661	-0.0039899	557.2717254820304	37.421	0.47306	37.212	36.999	37.472	-0.2092	0.036369	-0.0038482	NaN	20.947	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56017			28967	10632	19956	19996							-0.01745945931065762
ITQFSTPLE	9	Unmodified	_ITQFSTPLE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3214111328125	2	518.27149	1034.52843	0.055512	2.877E-05	3.035	0.0015729	3.0905	0.0016017	518.2729842915999	68.483	1.1659	68.19	67.548	68.714	-0.29267					41	29	2	0	0	0	0.024292	1	8141	8141		32.812	0	1	219030	+		28968	36804	19957	19997	33480	33480					0.012543304864720994
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7902526855469	2	510.78985	1019.56515	-0.10224	-5.2222E-05	-0.3372	-0.00017224	-0.43944	-0.00022446	510.78962090929684	42.97	1.1558	42.857	42.538	43.693	-0.11253					73	30	4	0	0	0	0.01388	3	3916	3894;3904;3916		190.52	87.745	1	10155000			28969	9882	19958	19998	33481;33482;33483	33483					0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7901306152344	2	510.78985	1019.56515	-0.4644	-0.00023721	-0.027698	-1.4148E-05	-0.4921	-0.00025136	510.7897962530633	43.138	1.1585	42.9	42.639	43.797	-0.23736					76	30	5	0	0	0	0.013924	4	3922	3909;3922;3934;3949		167.23	79.474	1	10175000			28970	9882	19958	19998	33484;33485;33486;33487	33485					0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.79010009765625	2	510.78985	1019.56515	-0.77294	-0.00039481	0.17725	9.0535E-05	-0.59569	-0.00030427	510.7899116446855	43.158	1.0667	42.932	42.636	43.703	-0.22597					78	28	6	0	0	0	0.013293	4	3915	3906;3915;3927;3941		176.09	82.08	1	11144000			28971	9882	19958	19998	33488;33489;33490;33491	33489					0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.78985	1019.56515	-0.73748	-0.0003767	0.3983	0.00020345	-0.33918	-0.00017325	510.7899370113468	43.132	0.68843	43.132	42.823	43.511	0	0.082072	0.00043716	NaN	176.09	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1061700			28972	9882	19958	19998							0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.78985	1019.56515	-0.53282	-0.00027216	0.14467	7.3898E-05	-0.38814	-0.00019826	510.78976931648765	43.341	0.65279	43.202	42.956	43.609	-0.13929	0.15135	0.00017806	NaN	176.09	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1182500			28973	9882	19958	19998							0.056146271030456774
ITQGTPLKY	9	Unmodified	_ITQGTPLKY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.78985	1019.56515	0.13546	6.9192E-05	-0.68297	-0.00034885	-0.54751	-0.00027966	510.7893597251534	43.248	0.61797	43.278	43.046	43.664	0.030827	0.22817	-0.00066744	NaN	176.09	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1214800			28974	9882	19958	19998							0.056146271030456774
ITQIHQEVE	9	Unmodified	_ITQIHQEVE_					0	0	0			REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.7686767578125	2	548.785296	1095.55604	-0.78687	-0.00043182	0.85748	0.00047057	0.070603	3.8746E-05	549.2873490697574	84.136	0.68655	84.136	83.735	84.422	0					23	15	3	0	0	0	0.024418	1	10487	10487		30.318	0	1	162320	+		28975	26238	19959	19999	33492	33492					0.012082337467063553
ITQLIHHLN	9	Unmodified	_ITQLIHHLN_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3018798828125	2	544.81419	1087.61383	-1.5195	-0.00082786	2.0492	0.0011164	0.52964	0.00028856	544.8147755043057	65.315	0.81801	65.043	64.863	65.681	-0.27282					36	22	2	0	0	0	0.024427	1	7663	7663		34.173	3.8548	1	530940	+		28976	25129	19960	20000	33493	33493					0.07352540462807156
ITQNEEAAEL	10	Unmodified	_ITQNEEAAEL_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2704467773438	2	559.272218	1116.52988	-1.0094	-0.00056451	-1.4872	-0.00083172	-2.4965	-0.0013962	559.2712230839832	62.925	1.4316	62.686	62.419	63.85	-0.23926					66	37	3	0	0	0	0.50517	1	7317	7317		87.696	5.3914	1	3429600	+		28977	29168	19961	20001	33494	33494					-0.023720802154457488
ITQNEEAAEL	10	Unmodified	_ITQNEEAAEL_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.2716674804688	2	559.272218	1116.52988	-0.1025	-5.7325E-05	-1.8803	-0.0010516	-1.9828	-0.0011089	559.271066399737	62.922	0.97211	62.701	62.547	63.519	-0.22097					44	24	3	0	0	0	0.78438	1	7091	7091		61.691	8.7546	1	652950	+		28978	29168	19961	20001	33495	33495					-0.023720802154457488
ITQNGTEPANY	11	Unmodified	_ITQNGTEPANY_					0	0	0			REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.2845458984375	2	604.283117	1206.55168	-1.2362	-0.00074701	4.437	0.0026812	3.2008	0.0019342	604.2857107819184	62.059	0.72795	61.881	61.576	62.304	-0.17781					57	18	4	0	0	0	0.55321	1	6976	6976		72.879	2.063	1	3286600	+		28979	36668	19962	20002	33496	33496					-0.04333275466842679
ITQPQNRLD	9	Unmodified	_ITQPQNRLD_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.82666015625	2	542.790912	1083.56727	-0.81782	-0.00044391	-3.1989	-0.0017363	-4.0167	-0.0021802	543.2907043595862	52.826	1.0641	52.826	52.554	53.618	0					52	28	2	0	0	0	0.024487	1	5793	5793		24.203	0	1	241450	+		28980	28456	19963	20003	33497	33497					0.028830558408344586
ITQQRTVKP	9	Unmodified	_ITQQRTVKP_					0	0	0			REV__ENST00000421655.1_1_9:108520752-108520932:+|nuORF	REV__ENST00000421655.1_1_9:108520752-108520932:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.7850952148438	2	535.819473	1069.62439	-0.76402	-0.00040938	1.7621	0.00094419	0.99811	0.00053481	535.820322105807	52.57	0.43338	52.57	52.431	52.864	0					16	10	2	0	0	0	0.024367	1	5674	5674		29.17	3.7199	1	71150	+		28981	32184	19964	20004	33498	33498					0.09236523117237994
ITQRKTSRA	9	Unmodified	_ITQRKTSRA_					0	0	0			REV__ENSG00000123569|ENST00000217926|H2BW1	REV__ENSG00000123569|ENST00000217926|H2BW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.33203125	2	530.814722	1059.61489	-0.23773	-0.00012619	-3.9709	-0.0021078	-4.2086	-0.002234	531.3140479523839	79.596	0.29176	79.377	79.16	79.452	-0.21922					8	6	2	0	0	0	0.024438	1	9529	9529		36.447	15.5	1	72432	+		28982	22706	19965	20005	33499	33499					0.08746754831713588
ITQRMAII	8	Unmodified	_ITQRMAII_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.280029296875	2	473.281137	944.547722	-0.85059	-0.00040257	-3.6485	-0.0017267	-4.499	-0.0021293	473.2792363297447	53.815	0.72169	53.679	53.462	54.183	-0.13617					52	22	3	0	0	0	0.30053	1	5660	5660		111.65	5.2331	1	3731500			28983	2424	19966	20006	33500	33500					0.07323008296407352
ITQRMAII	8	Unmodified	_ITQRMAII_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.281137	944.547722	-0.39759	-0.00018817	-3.2631	-0.0015444	-3.6607	-0.0017326	473.279293711078	53.496	0.17989	53.348	53.203	53.383	-0.14723	-0.26239	0.00074232	NaN	111.65	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58625			28984	2424	19966	20006							0.07323008296407352
ITQSSTLEP	9	Unmodified	_ITQSSTLEP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7944641113281	2	488.253297	974.492041	-0.43473	-0.00021226	0.41813	0.00020416	-0.016596	-8.103E-06	488.25343636070824	63.109	0.47762	62.87	62.654	63.132	-0.23926					18	11	2	0	0	0	0.022657	1	7314	7314		87.696	40.039	1	188360	+		28985	27387	19967	20007	33501	33501					0.0037745358978327204
ITQSSTLEP	9	Unmodified	_ITQSSTLEP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.253297	974.492041	-0.20675	-0.00010095	0.013916	6.7947E-06	-0.19284	-9.4153E-05	488.25329600555233	63.253	0.48167	63.032	62.776	63.257	-0.22097	0.041083	9.6508E-05	NaN	87.696	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199160	+		28986	27387	19967	20007							0.0037745358978327204
ITQSSTLEP	9	Unmodified	_ITQSSTLEP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.253297	974.492041	-0.14326	-6.9947E-05	-0.050734	-2.4771E-05	-0.19399	-9.4719E-05	488.25326389820185	63.241	0.5921	63.058	62.873	63.465	-0.18386	0.066554	3.3376E-05	NaN	87.696	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185060	+		28987	27387	19967	20007							0.0037745358978327204
ITQSSTLEP	9	Unmodified	_ITQSSTLEP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	488.253297	974.492041	0.51589	0.00025189	-0.47646	-0.00023263	0.03943	1.9252E-05	488.25309103265886	63.367	0.47224	63.109	62.917	63.39	-0.25824	0.11759	-0.00038235	NaN	87.696	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257940	+		28988	27387	19967	20007							0.0037745358978327204
ITQTSREI	8	Unmodified	_ITQTSREI_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MSMS	OPSCC_40_ClassI_Rep-3	6	474.26123046875	2	474.261456	946.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.658	1	25.487	24.987	25.987	-0.17151								0	0	0	0.66038	1	1210	1210		44.117	0	1				28989	1054	19968	20008	33502	33502					0.03296579546508838
ITRAITTLL	9	Unmodified	_ITRAITTLL_					0	0	0			REV__nc|ENSG00000072110|P12814-2|ACTN1;REV__ENSG00000077522|ENST00000366578|ACTN2;REV__nc|ENSG00000130402|O43707-3|ACTN4	REV__ENSG00000077522|ENST00000366578|ACTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.3214111328125	2	501.321317	1000.62808	0.20013	0.00010033	-0.4236	-0.00021236	-0.22346	-0.00011203	501.3209698976432	63.305	1.3681	63.305	63.054	64.422	0					93	37	4	0	0	0	0.16468	1	7398	7398		96.19	8.4361	1	7214800	+		28990	20594;23112;20461	19969	20009	33503	33503					0.12779192891071034
ITRAITTLL	9	Unmodified	_ITRAITTLL_					0	0	0			REV__nc|ENSG00000072110|P12814-2|ACTN1;REV__ENSG00000077522|ENST00000366578|ACTN2;REV__nc|ENSG00000130402|O43707-3|ACTN4	REV__ENSG00000077522|ENST00000366578|ACTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.3216247558594	2	501.321317	1000.62808	-0.016251	-8.1471E-06	-0.18114	-9.081E-05	-0.19739	-9.8957E-05	501.32110016440777	63.535	1.4564	63.283	63.048	64.505	-0.25141					112	39	4	0	0	0	0.15366	1	7400	7400		98.629	2.4389	1	6967100	+		28991	20594;23112;20461	19969	20009	33504	33504					0.12779192891071034
ITRDVNYGW	9	Unmodified	_ITRDVNYGW_					0	0	0		ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2799682617188	2	562.28018	1122.54581	0.021818	1.2268E-05	-1.0461	-0.0005882	-1.0243	-0.00057593	562.279017564316	51.228	0.87845	50.952	50.552	51.431	-0.27643					67	22	4	0	0	0	0.043667	1	5238	5238		131.03	53.714	1	1831300			28992	10181	19970	20010	33505	33505					-0.010563291878725067
ITRDVNYGW	9	Unmodified	_ITRDVNYGW_					0	0	0		ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.28018	1122.54581	0.53344	0.00029994	-1.995	-0.0011217	-1.4615	-0.00082179	562.2785654282039	50.966	0.87564	50.854	50.563	51.438	-0.11163	-0.023843	-0.00039764	NaN	131.03	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1636900			28993	10181	19970	20010							-0.010563291878725067
ITRDVNYGW	9	Unmodified	_ITRDVNYGW_					0	0	0		ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	562.28018	1122.54581	0.54812	0.0003082	-1.7839	-0.0010031	-1.2358	-0.00069487	562.2787148037721	51.009	0.95678	50.829	50.534	51.491	-0.18071	-0.049591	-0.00016032	NaN	131.03	72	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931200			28994	10181	19970	20010							-0.010563291878725067
ITREAQMW	8	Oxidation (M)	_ITREAQM(Oxidation (M))W_		ITREAQM(1)W		ITREAQM(85)W	0	0	1		ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MSMS	OPSCC_40_ClassI_Rep-3	6	525.7550659179688	2	525.755484	1049.49641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.902	1	36.693	36.193	37.193	-0.2092								0	0	0	0.3354	1	2910	2910		84.916	26.134	1				28995	3705	19971	20011	33506	33506		141			-0.02635360468343606
ITREKAVT	8	Unmodified	_ITREKAVT_					0	0	0		ENST00000555997.1_1_14:69255854-69255995:-|nuORF	ENST00000555997.1_1_14:69255854-69255995:-|nuORF	ENST00000555997.1_1_14:69255854-69255995:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2736511230469	2	459.274367	916.53418	-0.28317	-0.00013005	2.756	0.0012658	2.4729	0.0011357	459.27477934147225	25.895	0.38073	25.724	25.457	25.837	-0.17078					20	9	3	0	0	0	0.35998	1	1273	1273		102.77	6.5829	1	1594900			28996	16699	19972	20012	33507	33507					0.07257473788797597
ITRFLWPK	8	Unmodified	_ITRFLWPK_					0	0	0		ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENST00000602467.1_1_16:67679149-67679675:+|nuORF	ENSG00000159753|ENST00000334583|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8172607421875	2	530.818744	1059.62294	-0.34045	-0.00018071	1.8505	0.00098227	1.51	0.00080156	531.3214155925234	87.495	0.4499	87.495	87.278	87.728	0					16	10	2	0	0	0	0.027866	1	11013	11013		40.778	6.8565	1	96427			28997	6766	19973	20013	33508	33508					0.09550933819105012
ITRFSRRK	8	Unmodified	_ITRFSRRK_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.31103515625	2	532.327799	1062.64105	-0.71329	-0.0003797	4.0873	0.0021758	3.374	0.0017961	532.3298977074027	35.387	0.27818	35.201	35.061	35.339	-0.18675					10	6	2	0	0	0	0.027866	1	2657	2657		30.504	0	1	125190			28998	6282	19974	20014	33509	33509					0.11223068793856328
ITRGCHLCV	9	Carbamidomethyl (C)	_ITRGC(Carbamidomethyl (C))HLCV_	ITRGC(0.996)HLC(0.004)V		ITRGC(24)HLC(-24)V		0	1	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7626953125	2	529.765329	1057.5161	-0.21241	-0.00011253	-3.6746	-0.0019467	-3.887	-0.0020592	529.7629420224104	99.324	0.96301	99.335	98.78	99.743	0.010231					18	11	2	0	0	0	0.4752	1	12667	12667		60.972	7.6205	2	176430	+		28999	21116	19975	20015	33510	33510	269				-0.010353077292165835
ITRGCHLCV	9	Carbamidomethyl (C)	_ITRGC(Carbamidomethyl (C))HLCV_					0	1	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.765329	1057.5161	-0.3173	-0.00016809	-3.3511	-0.0017753	-3.6684	-0.0019434	529.7629651062682	99.252	0.61736	99.252	99.045	99.663	0	-0.041441	0.000117	NaN	60.972	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100340	+		29000	21116	19975	20015			269				-0.010353077292165835
ITRGCHLCV	9	Carbamidomethyl (C)	_ITRGC(Carbamidomethyl (C))HLCV_					0	1	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	529.765329	1057.5161	-0.21241	-0.00011253	-3.6746	-0.0019467	-3.887	-0.0020592	529.7629420224104	99.324	0.96301	99.335	98.78	99.743	0.010231	0.041441	-0.00022568	NaN	60.972	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176430	+		29001	21116	19975	20015			269				-0.010353077292165835
ITRIESQASP	10	Unmodified	_ITRIESQASP_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.8046264648438	2	551.29857	1100.58259	0.22032	0.00012146	3.0311	0.0016711	3.2514	0.0017925	551.30016995972	70.29	1.9192	70.076	69.73	71.65	-0.21425					82	48	4	0	0	0	0.03519	1	8370	8370		51.193	3.5354	1	6736700	+		29002	25860	19976	20016	33511	33511					0.03631922638055585
ITRIINTYSLI	11	Unmodified	_ITRIINTYSLI_					0	0	0			REV__ENSG00000197706|ENST00000343399|OR6C74	REV__ENSG00000197706|ENST00000343399|OR6C74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.8811950683594	3	436.262489	1305.76564	-0.4484	-0.00019562	-1.1294	-0.00049273	-1.5778	-0.00068835	436.26208677161685	39.702	1.3929	39.725	39.135	40.528	0.023727					115	38	4	0	0	0	0.024786	1	3425	3425		47.228	25.447	1	5184200	+		29003	27985	19977	20017	33512	33512					0.12498476699829553
ITRISKLSN	9	Unmodified	_ITRISKLSN_					0	0	0		ENST00000498316.3_1_7:28857752-28858893:+|nuORF	ENST00000498316.3_1_7:28857752-28858893:+|nuORF	ENST00000498316.3_1_7:28857752-28858893:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.3137817382812	2	516.314023	1030.61349	-0.26252	-0.00013554	-0.2214	-0.00011431	-0.48392	-0.00024986	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	0.87816	1	12482	12482		33.922	1.9668	1	33267000			29004	15618	19978	20018	33513	33513					0.0994112074295117
ITRIVTFTP	9	Unmodified	_ITRIVTFTP_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;ENST00000539950.1_1_9:79955120-79955475:+|nuORF	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.326416015625	2	524.313492	1046.61243	-0.092977	-4.8749E-05	-2.119	-0.001111	-2.2119	-0.0011597	524.3117959535243	79.375	0.32594	79.394	79.274	79.6	0.018677					10	7	2	0	0	0	0.024405	1	9794	9794		27.882	4.8398	1	74771			29005	10074	19979	20019	33514	33514					0.09098906374038052
ITRKGPNN	8	Unmodified	_ITRKGPNN_					0	0	0			REV__ENST00000550483.5_1_12:49218969-49220098:+|nuORF	REV__ENST00000550483.5_1_12:49218969-49220098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2743225097656	2	450.256508	898.498464	0.42685	0.00019219	4.2712	0.0019231	4.698	0.0021153	450.2585609897451	92.173	0.35233	92.182	91.875	92.227	0.009407					15	8	2	0	0	0	0.027866	1	11590	11590		42.396	18.193	1	249850	+		29006	26151	19980	20020	33515	33515					0.045154363318033575
ITRKGVQI	8	Unmodified	_ITRKGVQI_					0	0	0			REV__ENSG00000183763|ENST00000331456|TRAIP;REV__ENST00000477546.5_1_3:49881200-49893910:-|nuORF	REV__ENSG00000183763|ENST00000331456|TRAIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.79315185546875	2	457.792727	913.5709	3.2748	0.0014992	-2.7636	-0.0012652	0.51121	0.00023403	457.7912473603427	18.197	0.48989	18.197	17.892	18.382	0					17	9	3	0	0	0	1.0516	1	267	267		29.15	4.6455	1	80331	+		29007	27606;33336	19981	20021	33516	33516					0.11065770405377862
ITRKPVTV	8	Unmodified	_ITRKPVTV_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2644958496094	2	457.295102	912.575651	-0.26544	-0.00012139	1.0089	0.00046135	0.74342	0.00033996	457.29580679144436	81.73	0.84692	81.599	80.936	81.783	-0.13075					31	20	3	0	0	0	0.027866	1	10138	10138		37.812	19.487	1	530120			29008	5754	19982	20022	33517	33517					0.11586654548125352
ITRLSPFVT	9	Unmodified	_ITRLSPFVT_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7340087890625	2	517.305667	1032.59678	-0.81796	-0.00042313	-1.7614	-0.00091117	-2.5793	-0.0013343	517.3048545729747	43.646	0.35104	43.426	43.246	43.597	-0.21939					21	9	3	0	0	0	0.024447	1	4018	4018		32.812	0	1	584150	+		29009	28801	19983	20023	33518	33518					0.08178619856994374
ITRLVLVV	8	Unmodified	_ITRLVLVV_					0	0	0		nc|ENSG00000125510|P41146-2|OPRL1;ENSG00000125510|ENST00000336866|OPRL1;nc|ENSG00000082556|P41145-2|OPRK1;ENSG00000082556|ENST00000265572|OPRK1	nc|ENSG00000125510|P41146-2|OPRL1;nc|ENSG00000082556|P41145-2|OPRK1	nc|ENSG00000125510|P41146-2|OPRL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.8883361816406	2	456.81567	911.616788	-0.87108	-0.00039792	-3.171	-0.0014486	-4.0421	-0.0018465	456.8162934271266	38.171	0.26634	37.95	37.724	37.99	-0.22148					11	7	2	0	0	0	0.027866	1	3108	3108		68.485	5.5063	1	60105			29010	4115;1737	19984	20024	33519	33519					0.15744415587607818
ITRPRCAPKV	10	Unmodified	_ITRPRCAPKV_					0	0	0		KLHL28|p.M275I|1|0.43|ENSG00000179454|chr14:44945104-44945104|C/T|missense_variant	KLHL28|p.M275I|1|0.43|ENSG00000179454|chr14:44945104-44945104|C/T|missense_variant	KLHL28|p.M275I|1|0.43|ENSG00000179454|chr14:44945104-44945104|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.2544555664062	2	570.837143	1139.65973	-0.027617	-1.5765E-05	2.9055	0.0016586	2.8779	0.0016428	570.8390822110713	52.653	0.60352	52.463	52.227	52.831	-0.18982					30	14	3	0	0	0	0.03519	1	5451	5451		30.318	18.807	1	710170			29011	17805	19985	20025	33520	33520					0.09548862373367228
ITRRPYSEI	9	Unmodified	_ITRRPYSEI_					0	0	0			REV__ENST00000579071.1_1_18:71825586-71825712:+|nuORF	REV__ENST00000579071.1_1_18:71825586-71825712:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.8167724609375	2	567.81693	1133.61931	-0.55157	-0.00031319	0.30287	0.00017197	-0.2487	-0.00014122	567.8170291781905	42.882	0.90424	42.656	42.336	43.24	-0.22597					67	23	4	0	0	0	0.53979	1	3907	3907		56.721	0	1	4196700	+		29012	20544	19986	20026	33521	33521					0.05784219254610434
ITRRRKKVW	9	Unmodified	_ITRRRKKVW_					0	0	0			REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	REV__nc|ENSG00000182831|Q14CZ0-2|HAPSTR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.9017944335938	2	621.898923	1241.78329	0.29861	0.0001857	3.4174	0.0021253	3.716	0.002311	621.9009009435291	106.07	0.38474	105.94	105.7	106.09	-0.1238					22	13	2	0	0	0	0.99726	1	13204	13204		20.947	1.8434	1	137450	+		29013	27513	19987	20027	33522	33522					0.1720728153602522
ITRSIEVE	8	Unmodified	_ITRSIEVE_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.30816650390625	2	473.763832	945.513111	1.1309	0.00053579	-1.2944	-0.00061322	-0.16343	-7.7425E-05	473.7627415320577	18.294	0.24414	18.138	17.953	18.197	-0.15637					6	4	2	0	0	0	0.027866	1	289	289		24.203	0	1	8020.1	+		29014	36907	19988	20028	33523	33523					0.038174636892904346
ITRVGVLFAS	10	Unmodified	_ITRVGVLFAS_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167114257812	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	1.0447	1	10688	10688		40.058	0.80534	1	5249700			29015	1042	19989	20029	33524	33524					0.09498308748334239
ITRVIEGL	8	Unmodified	_ITRVIEGL_					0	0	0			REV__ENST00000587860.1_1_18:46287547-46385927:+|nuORF	REV__ENST00000587860.1_1_18:46287547-46385927:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.7743225097656	2	450.779285	899.544017	0.04427	1.9956E-05	0.29634	0.00013358	0.34061	0.00015354	450.77917610503636	21.442	0.96527	21.251	21.029	21.994	-0.19072					33	19	2	0	0	0	0.027866	1	659	659		60.972	9.6365	1	238750	+		29016	23412	19990	20030	33525	33525					0.09022661794188025
ITRYNISSI	9	Unmodified	_ITRYNISSI_					0	0	0			REV__ENST00000523285.5_1_17:45403648-45403720:+|nuORF	REV__ENST00000523285.5_1_17:45403648-45403720:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7555541992188	2	533.798206	1065.58186	-0.51974	-0.00027744	-3.1813	-0.0016981	-3.701	-0.0019756	533.7954822127399	60.592	0.59975	60.386	60.172	60.772	-0.20599					20	14	2	0	0	0	0.024447	1	6720	6720		40.778	10.937	1	136200	+		29017	34353	19991	20031	33526	33526					0.051691279890064834
ITSAFTAIAIL	11	Unmodified	_ITSAFTAIAIL_					0	0	0		PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant;ENSG00000277161|ENST00000614443|PIGW	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	PIGW|p.I393Nfs*11|1|0.31|ENSG00000277161|chr17:36538277-36538278|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7827758789062	2	560.834257	1119.65396	-0.64981	-0.00036443	1.013	0.00056815	0.36324	0.00020372	560.8343873834693	64.797	0.56004	64.595	64.38	64.94	-0.20254					25	13	3	0	0	0	0.024738	1	7392	7392		42.396	25.031	1	260150			29018	11054	19992	20032	33527	33527					0.09892042342698915
ITSAKMSTKL	10	Unmodified	_ITSAKMSTKL_					0	0	0			REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|21|2|sense	REV__HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|21|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3111572265625	2	540.310092	1078.60563	-0.30433	-0.00016444	-3.0931	-0.0016712	-3.3974	-0.0018357	540.3083912995808	72.712	1.2141	72.447	72.042	73.256	-0.26479					101	28	5	0	0	0	0.56936	1	8599	8599		80.455	0.51539	1	9780500	+		29019	36098	19993	20033	33528	33528					0.06947225431144943
ITSEWNKI	8	Unmodified	_ITSEWNKI_					0	0	0		nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.76165771484375	2	495.766374	989.518196	-0.22867	-0.00011337	3.7808	0.0018744	3.5521	0.001761	495.76824219865654	42.047	0.88838	41.915	41.603	42.491	-0.13219					36	25	2	0	0	0	0.027866	1	3764	3764		24.203	0	1	3634900			29020	18156	19994	20034	33529	33529					0.023017675519099612
ITSEWNKI	8	Unmodified	_ITSEWNKI_					0	0	0		nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.766374	989.518196	-0.34724	-0.00017215	0.070123	3.4765E-05	-0.27711	-0.00013738	495.7663388416182	41.835	0.58103	41.712	41.456	42.037	-0.12299	-0.1725	-0.00092785	NaN	17.365	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592590			29021	18156	19994	20034							0.023017675519099612
ITSEWNKI	8	Unmodified	_ITSEWNKI_					0	0	0		nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.766374	989.518196	-0.40557	-0.00020107	0.35386	0.00017543	-0.051706	-2.5634E-05	495.76641135888775	42.075	0.61146	41.843	41.583	42.194	-0.23186	-0.041552	-0.00064652	NaN	17.365	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	826740			29022	18156	19994	20034							0.023017675519099612
ITSEWNKI	8	Unmodified	_ITSEWNKI_					0	0	0		nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.766374	989.518196	-0.24261	-0.00012028	-0.2596	-0.0001287	-0.50221	-0.00024898	495.7661129849604	42.113	0.82571	41.883	41.58	42.406	-0.23029	-0.0012265	-0.0012548	NaN	17.365	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1272700			29023	18156	19994	20034							0.023017675519099612
ITSLHELLV	9	Unmodified	_ITSLHELLV_					0	0	0		ENST00000526180.5_2_11:111782575-111782635:-|nuORF	ENST00000526180.5_2_11:111782575-111782635:-|nuORF	ENST00000526180.5_2_11:111782575-111782635:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8059692382812	2	512.8055	1023.59645	0.87362	0.000448	-0.7626	-0.00039106	0.11103	5.6935E-05	512.8050948019152	71.036	0.69397	70.743	70.455	71.149	-0.29291					52	16	4	0	0	0	0.67308	1	8560	8560		47.916	0	1	1283800			29024	16115	19995	20035	33530	33530					0.08559200137131029
ITSLRLAAKV	10	Unmodified	_ITSLRLAAKV_					0	0	0		nc|ENSG00000205089|Q6ZMN8-3|CCNI2;ENSG00000205089|ENST00000378731|CCNI2;nc|ENSG00000205089|Q6ZMN8-2|CCNI2	nc|ENSG00000205089|Q6ZMN8-3|CCNI2	nc|ENSG00000205089|Q6ZMN8-3|CCNI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.7850952148438	2	536.347866	1070.68118	-0.75299	-0.00040387	3.9876	0.0021388	3.2346	0.0017349	536.3496895319454	53.125	0.587	53.125	52.75	53.337	0					36	15	3	0	0	0	0.03519	1	5674	5674		9.7057	0	1	459500			29025	18669	19996	20036	33531	33531					0.14866570673734714
ITSLVASSAS	10	Unmodified	_ITSLVASSAS_					0	0	0		nc|ENSG00000119771|Q96CT2-2|KLHL29;ENSG00000119771|ENST00000486442|KLHL29;ENST00000489446.1_1_2:23755466-23866061:+|nuORF	nc|ENSG00000119771|Q96CT2-2|KLHL29	nc|ENSG00000119771|Q96CT2-2|KLHL29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.24462890625	2	468.25584	934.497126	0.096758	4.5308E-05	1.3195	0.00061785	1.4162	0.00066316	468.2564502074922	103.8	0.36876	103.63	103.4	103.77	-0.16791					9	8	2	0	0	0	0.03519	1	12902	12902		32.812	11.865	1	49374			29026	3765	19997	20037	33532	33532					0.027257574523787298
ITSNYEVIR	9	Unmodified	_ITSNYEVIR_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.7954711914062	2	547.795663	1093.57677	-0.87004	-0.00047661	0.34285	0.00018781	-0.52719	-0.00028879	547.7957299049	62.095	0.58547	61.869	61.534	62.119	-0.22663					37	15	3	0	0	0	0.12914	1	7178	7178		104.06	0	1	3195700			29027	9552	19998	20038	33533	33533					0.03372824126358864
ITSPLAAGSKP	11	Unmodified	_ITSPLAAGSKP_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8167114257812	2	521.300581	1040.58661	-1.2529	-0.00065313	-4.1389	-0.0021576	-5.3917	-0.0028107	521.3002508643596	64.829	0.15784	64.566	64.455	64.613	-0.2626					5	3	2	0	0	0	0.024778	1	7610	7610		36.447	1.2947	1	46464			29028	2166	19999	20039	33534	33534					0.06794012131740601
ITSPVHVSF	9	Unmodified	_ITSPVHVSF_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.76904296875	2	493.768917	985.523281	-0.035473	-1.7516E-05	-0.1927	-9.5149E-05	-0.22817	-0.00011266	493.7687189462024	60.231	1.4075	60.033	59.651	61.058	-0.19742					81	35	3	0	0	0	0.08613	3	6697	6687;6697;6708		115.46	30.099	1	3956000			29029	4506	20000	20040	33535;33536;33537	33536					0.029940714145254788
ITSPVHVSF	9	Unmodified	_ITSPVHVSF_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7687072753906	2	493.768917	985.523281	-0.11468	-5.6627E-05	-0.11911	-5.8813E-05	-0.23379	-0.00011544	493.768770806401	60.119	1.6097	59.943	59.554	61.164	-0.1761					85	40	3	0	0	0	0.18915	3	6689	6678;6689;6703		90.777	24.973	1	3741400			29030	4506	20000	20040	33538;33539;33540	33539					0.029940714145254788
ITSPVHVSF	9	Unmodified	_ITSPVHVSF_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7686767578125	2	493.768917	985.523281	-0.33525	-0.00016553	-0.14911	-7.3628E-05	-0.48436	-0.00023916	493.76877825094556	60.299	0.94078	60.045	59.643	60.584	-0.25374					58	23	3	0	0	0	0.13494	3	6687	6687;6696;6710		102.77	28.799	1	3513800			29031	4506	20000	20040	33541;33542;33543	33541					0.029940714145254788
ITSPVLIIHGT	11	Unmodified	_ITSPVLIIHGT_					0	0	0		ENSG00000129968|ENST00000292577|ABHD17A;nc|ENSG00000129968|Q96GS6-2|ABHD17A;ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000129968|ENST00000292577|ABHD17A;ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8418579101562	2	575.845156	1149.67576	0.025684	1.479E-05	-3.0728	-0.0017694	-3.0471	-0.0017547	575.8433115256851	102.77	0.5423	102.59	102.33	102.87	-0.17034					32	12	4	0	0	0	1.0521	1	12739	12739		24.519	3.5723	1	397440			29032	2836;4375	20001	20041	33544	33544					0.10690847091291289
ITSQDVLHSW	10	Unmodified	_ITSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.2982177734375	2	593.29857	1184.58259	-0.69048	-0.00040966	-0.41957	-0.00024893	-1.1101	-0.0006586	593.298144802806	62.615	0.85292	62.394	62.005	62.858	-0.22097					61	23	4	0	0	0	5.488E-06	5	7032	7032;7043;7053;7061;7070		264.95	122.87	1	4635400			29033	10175	20002	20042	33545;33546;33547;33548;33549	33545					-0.002320773619430838
ITSQDVLHSW	10	Unmodified	_ITSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.2985229492188	2	593.29857	1184.58259	-1.4662	-0.00086992	0.48178	0.00028584	-0.98447	-0.00058408	593.2987180209194	62.461	0.83142	62.278	61.956	62.788	-0.18386					59	26	4	0	0	0	4.6765E-06	5	7030	7022;7030;7042;7054;7062		271.48	90.557	1	9176800			29034	10175	20002	20042	33550;33551;33552;33553;33554	33551					-0.002320773619430838
ITSQDVLHSW	10	Unmodified	_ITSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.2987060546875	2	593.29857	1184.58259	-0.83566	-0.0004958	0.30811	0.0001828	-0.52755	-0.00031299	593.2985919540789	62.72	0.8218	62.462	62.096	62.917	-0.25824					53	23	3	0	0	0	5.1566E-06	4	7029	7029;7038;7050;7060		271.48	114.94	1	6294900			29035	10175	20002	20042	33555;33556;33557;33558	33555					-0.002320773619430838
ITSQPRSW	8	Unmodified	_ITSQPRSW_					0	0	0		nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.75677490234375	2	487.756341	973.498129	-0.098591	-4.8088E-05	0.45364	0.00022126	0.35505	0.00017318	487.7562659147809	37.424	0.72114	37.231	36.966	37.687	-0.193					46	18	4	0	0	0	0.50453	1	3007	3007		85.161	0.2453	1	1516000			29036	18098	20003	20043	33559	33559					0.01032016611952713
ITSQPRSW	8	Unmodified	_ITSQPRSW_					0	0	0		nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.756591796875	2	487.756341	973.498129	-0.98431	-0.00048011	1.2682	0.00061855	0.28384	0.00013844	487.75676230420214	37.39	0.84174	37.17	36.846	37.688	-0.2195					47	21	3	0	0	0	0.56311	1	3006	3006		79.713	0.26157	1	1867800			29037	18098	20003	20043	33560	33560					0.01032016611952713
ITSQPRSW	8	Unmodified	_ITSQPRSW_					0	0	0		nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	nc|ENSG00000084072|Q9UNP9-2|PPIE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7567443847656	2	487.756341	973.498129	-0.10147	-4.9494E-05	0.35593	0.00017361	0.25445	0.00012411	487.7562732896765	37.374	0.62541	37.165	36.883	37.509	-0.2092					36	15	3	0	0	0	0.67154	1	2993	2993		69.628	0.8408	1	1573500			29038	18098	20003	20043	33561	33561					0.01032016611952713
ITSQVTGQIGW	11	Unmodified	_ITSQVTGQIGW_					0	0	0		ENST00000461733.5_1_3:183898306-183901401:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000468048.5_1_3:183898306-183899072:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.3143310546875	2	595.31422	1188.61389	-1.2257	-0.00072971	0.87957	0.00052362	-0.34618	-0.00020608	595.3147510009942	69.283	1.4604	69.022	68.666	70.126	-0.26166					93	34	4	0	0	0	3.01E-18	5	8042	8008;8018;8030;8042;8056		242.39	120.21	1	8932400			29039	6866	20004	20044	33562;33563;33564;33565;33566	33565					0.02712495672130899
ITSQVTGQIGW	11	Unmodified	_ITSQVTGQIGW_					0	0	0		ENST00000461733.5_1_3:183898306-183901401:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000468048.5_1_3:183898306-183899072:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.3142700195312	2	595.31422	1188.61389	-0.42191	-0.00025117	-0.043615	-2.5964E-05	-0.46552	-0.00027713	595.314222125566	69.22	1.4451	68.977	68.666	70.111	-0.24278					93	34	4	0	0	0	2.0341E-23	4	8038	8014;8026;8038;8052		271.26	136.45	1	10148000			29040	6866	20004	20044	33567;33568;33569;33570	33569					0.02712495672130899
ITSQVTGQIGW	11	Unmodified	_ITSQVTGQIGW_					0	0	0		ENST00000461733.5_1_3:183898306-183901401:+|nuORF;nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000468048.5_1_3:183898306-183899072:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	ENST00000461733.5_1_3:183898306-183901401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.314453125	2	595.31422	1188.61389	-0.58888	-0.00035057	0.16531	9.841E-05	-0.42357	-0.00025216	595.3143335054817	69.215	1.4818	68.993	68.645	70.127	-0.22245					92	35	4	0	0	0	6.4155E-13	5	8008	7997;8008;8020;8034;8047		214.05	93.78	1	9630400			29041	6866	20004	20044	33571;33572;33573;33574;33575	33572					0.02712495672130899
ITSRDCVQL	9	Unmodified	_ITSRDCVQL_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3055419921875	2	517.768591	1033.52263	-0.49264	-0.00025507	0.8659	0.00044833	0.37325	0.00019326	517.7688299173234	60.563	0.71796	60.357	60.131	60.849	-0.20599					29	17	2	0	0	0	0.024438	1	6715	6715		36.447	15.5	1	736960			29042	4258	20005	20045	33576	33576					0.007209087031696981
ITSSGKWIW	9	Unmodified	_ITSSGKWIW_					0	0	0		ENST00000549437.5_1_12:25205883-25232413:+|nuORF	ENST00000549437.5_1_12:25205883-25232413:+|nuORF	ENST00000549437.5_1_12:25205883-25232413:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2908935546875	2	539.290017	1076.56548	-1.6775	-0.00090465	4.3048	0.0023215	2.6273	0.0014169	539.2923661138805	65.449	0.49213	65.236	64.971	65.463	-0.21327					26	11	3	0	0	0	0.42604	1	7488	7488		64.207	8.7031	1	1774300			29043	16565	20006	20046	33577	33577					0.030260468229016624
ITSSYKYP	8	Unmodified	_ITSSYKYP_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.781982421875	2	479.74765	957.480748	-0.19532	-9.3703E-05	1.0995	0.00052749	0.90421	0.00043379	479.7481428185588	21.583	1.1897	21.583	21.195	22.385	0					35	24	2	0	0	0	0.027866	1	725	725		50.025	0	1	34764			29044	6750	20007	20047	33578	33578					0.0003067628628059538
ITSVPVNSCEF	11	Unmodified	_ITSVPVNSCEF_					0	0	0			REV__ENST00000522955.5_1_8:38663104-38684943:+|nuORF	REV__ENST00000522955.5_1_8:38663104-38684943:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	598.2591552734375	2	598.286814	1194.55907	-1.5305	-0.00091566	-3.6835	-0.0022038	-5.214	-0.0031194	598.2845863522645	64.972	0.44585	64.769	64.617	65.063	-0.20254					16	10	2	0	0	0	0.024778	1	7404	7404		36.447	9.3994	1	267680	+		29045	24561	20008	20048	33579	33579					-0.03042259190783625
ITTDVLYTI	9	Unmodified	_ITTDVLYTI_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7898559570312	2	519.789515	1037.56448	-0.81427	-0.00042325	0.59904	0.00031137	-0.21523	-0.00011187	519.7897760984735	80.099	0.84146	80.099	79.744	80.585	0					66	19	4	0	0	0	0.27161	3	9944	9944;9956;9971		79.451	21.64	1	4950200			29046	2604	20009	20049	33580;33581;33582	33580					0.04719787663339048
ITTDVLYTI	9	Unmodified	_ITTDVLYTI_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7894897460938	2	519.789515	1037.56448	-1.1612	-0.00060359	0.69415	0.00036081	-0.46706	-0.00024277	519.7897718390615	80.264	0.99884	80.112	79.8	80.799	-0.15168					54	23	3	0	0	0	0.43973	2	9951	9940;9951		63.306	7.8021	1	4966300			29047	2604	20009	20049	33583;33584	33584					0.04719787663339048
ITTDVLYTI	9	Unmodified	_ITTDVLYTI_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL|p.V221Gfs*8|1|0.05|ENSG00000104824|chr19:38845667-38845698|TCCATTCTTCCTGAAAATGACAATTCTCTGGA/-|frameshift_variant;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL|p.G407Wfs*22|1|0.43|ENSG00000104824|chr19:38840110-38840111|-/A|frameshift_variant;HNRNPL|p.S478Gfs*32|1|0.1|ENSG00000104824|chr19:38838513-38838522|GGGATTCACT/-|frameshift_variant;HNRNPL|p.H504Afs*16|1|0.23|ENSG00000104824|chr19:38838445-38838446|-/A|frameshift_variant	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.78955078125	2	519.789515	1037.56448	-0.85927	-0.00044664	0.70244	0.00036512	-0.15682	-8.1515E-05	519.7898574441391	80.103	0.88266	80.124	79.771	80.654	0.021446					68	20	5	0	0	0	0.4752	1	9874	9874		60.972	5.4677	1	5184900			29048	2604	20009	20049	33585	33585					0.04719787663339048
ITTEGKLW	8	Unmodified	_ITTEGKLW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.2652893066406	2	474.263468	946.512382	-1.7475	-0.00082879	1.4341	0.00068012	-0.31347	-0.00014867	474.26398303911907	52.232	0.4399	51.963	51.76	52.2	-0.26903					31	11	3	0	0	0	0.24001	2	5406	5406;5419		133.81	19.924	1	2630500			29049	8864	20010	20050	33586;33587	33586					0.03698669040238656
ITTEGKLW	8	Unmodified	_ITTEGKLW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.2648620605469	2	474.263468	946.512382	0.055823	2.6475E-05	-0.54859	-0.00026018	-0.49277	-0.0002337	474.26302186154396	52.102	0.44302	51.918	51.669	52.112	-0.18405					40	11	4	0	0	0	0.32162	1	5383	5383		108.09	12.272	1	2391400			29050	8864	20010	20050	33588	33588					0.03698669040238656
ITTEGKLW	8	Unmodified	_ITTEGKLW_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.263468	946.512382	-0.026673	-1.265E-05	-0.38966	-0.0001848	-0.41633	-0.00019745	474.2630398476234	51.969	0.48071	51.85	51.646	52.126	-0.11876	-0.060404	-0.00044828	NaN	133.81	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2597700			29051	8864	20010	20050							0.03698669040238656
ITTGFLVPE	9	Unmodified	_ITTGFLVPE_					0	0	0			REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2193908691406	2	488.771126	975.527698	-0.12871	-6.2911E-05	-2.0098	-0.00098234	-2.1385	-0.0010453	488.7698914216862	28.99	0.51485	28.84	28.572	29.087	-0.14952					17	11	3	0	0	0	0.024381	1	1745	1745		37.159	11.709	1	103550	+		29052	37058	20011	20051	33589	33589					0.038955358374209936
ITTHAPFVI	9	Unmodified	_ITTHAPFVI_					0	0	0			REV__ENSG00000204311|ENST00000644580|PJVK	REV__ENSG00000204311|ENST00000644580|PJVK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.9014892578125	2	499.78711	997.559667	-1.0555	-0.00052752	-3.9415	-0.0019699	-4.997	-0.0024974	499.785025584675	43.99	0.70107	43.746	43.344	44.045	-0.2444					40	18	3	0	0	0	0.023775	1	4090	4090		57.811	2.3071	1	1390500	+		29053	28589	20012	20052	33590	33590					0.06078948311221666
ITTHTRFTL	9	Unmodified	_ITTHTRFTL_					0	0	0		PTPRF|p.D970H|1|0.26|ENSG00000142949|chr1:43604060-43604060|G/C|missense_variant	PTPRF|p.D970H|1|0.26|ENSG00000142949|chr1:43604060-43604060|G/C|missense_variant	PTPRF|p.D970H|1|0.26|ENSG00000142949|chr1:43604060-43604060|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2589111328125	2	545.306198	1088.59784	-1.1306	-0.00061653	4.3326	0.0023626	3.202	0.0017461	545.3085644331435	61.254	0.68941	61	60.697	61.386	-0.25453					25	16	3	0	0	0	0.024397	1	6806	6806		31.53	0	1	263640			29054	19006	20013	20053	33591	33591					0.057088342259021374
ITTIEWND	8	Unmodified	_ITTIEWND_					0	0	0		CON__Q95M17;ENSG00000134216|ENST00000369740|CHIA;CHIA|p.E65K|1|0.47|ENSG00000134216|chr1:111312327-111312327|G/A|missense_variant	CON__Q95M17	CON__Q95M17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2666931152344	2	496.24019	990.465826	0.51146	0.00025381	-1.4858	-0.00073731	-0.97434	-0.00048351	496.23919762051275	49.001	0.53498	49.001	48.864	49.399	0					17	14	2	0	0	0	0.027866	1	5033	5033		6.3127	0	1	99840		+	29055	570	20014	20054	33592	33592					-0.029788155817186635
ITTIEWND	8	Unmodified	_ITTIEWND_					0	0	0		CON__Q95M17;ENSG00000134216|ENST00000369740|CHIA;CHIA|p.E65K|1|0.47|ENSG00000134216|chr1:111312327-111312327|G/A|missense_variant	CON__Q95M17	CON__Q95M17	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.24019	990.465826	-0.123	-6.1039E-05	-0.10832	-5.3753E-05	-0.23132	-0.00011479	496.24002523427663	49.319	0.26363	49.039	48.898	49.161	-0.27977	0.019824	0.00058888	NaN	6.3127	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95903		+	29056	570	20014	20054							-0.029788155817186635
ITTIEWND	8	Unmodified	_ITTIEWND_					0	0	0		CON__Q95M17;ENSG00000134216|ENST00000369740|CHIA;CHIA|p.E65K|1|0.47|ENSG00000134216|chr1:111312327-111312327|G/A|missense_variant	CON__Q95M17	CON__Q95M17	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.24019	990.465826	-0.23371	-0.00011598	-0.18201	-9.0323E-05	-0.41572	-0.0002063	496.23980427754253	49.2	0.37964	49.018	48.773	49.153	-0.18206	-0.0014135	0.00051574	NaN	6.3127	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116090		+	29057	570	20014	20054							-0.029788155817186635
ITTIQGLNL	9	Unmodified	_ITTIQGLNL_					0	0	0			REV__ENSG00000105143|ENST00000594383|SLC1A6	REV__ENSG00000105143|ENST00000594383|SLC1A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2588195800781	2	486.78985	971.565146	0.1823	8.8743E-05	-1.402	-0.00068248	-1.2197	-0.00059374	486.78878346217743	51.359	0.32301	51.359	51.212	51.535	0					12	8	2	0	0	0	0.02435	1	5445	5445		26.693	0	1	465660	+		29058	21497	20015	20055	33593	33593					0.07822627103041668
ITTKADIW	8	Unmodified	_ITTKADIW_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K;ENSG00000115977|ENST00000409085|AAK1;nc|ENSG00000115977|Q2M2I8-2|AAK1	ENSG00000138756|ENST00000502613|BMP2K;ENSG00000115977|ENST00000409085|AAK1	ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.2637023925781	2	474.263468	946.512382	-0.18339	-8.6977E-05	0.24117	0.00011438	0.05778	2.7403E-05	474.2634767071058	77.933	0.80727	77.772	77.527	78.334	-0.16196					56	18	4	0	0	0	0.68164	1	9296	9296		68.787	5.4806	1	2001900			29059	5277;3506	20016	20056	33594	33594					0.03698669040238656
ITTKAISRW	9	Unmodified	_ITTKAISRW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3157348632812	2	538.316566	1074.61858	-0.89526	-0.00048193	0.41699	0.00022447	-0.47827	-0.00025746	538.3166698450739	40.359	1.0379	40.209	39.933	40.971	-0.1497					55	27	4	0	0	0	0.034407	3	3490	3479;3490;3504		138.06	69.276	1	6041500			29060	7082	20017	20057	33595;33596;33597	33596					0.0842542460554796
ITTKAISRW	9	Unmodified	_ITTKAISRW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3159790039062	2	538.316566	1074.61858	-0.506	-0.00027239	-0.17639	-9.4952E-05	-0.68239	-0.00036734	538.3163402240232	40.528	1.0061	40.303	40.041	41.047	-0.225					57	26	4	0	0	0	0.071379	3	3497	3497;3508;3522		120.87	52.082	1	6276000			29061	7082	20017	20057	33598;33599;33600	33598					0.0842542460554796
ITTKAISRW	9	Unmodified	_ITTKAISRW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.316162109375	2	538.316566	1074.61858	-2.082	-0.0011208	1.5856	0.00085355	-0.49642	-0.00026723	538.3172758492747	40.586	1.1111	40.355	40.046	41.157	-0.23029					59	29	4	0	0	0	0.087669	3	3515	3492;3502;3515		114.89	50.696	1	5845200			29062	7082	20017	20057	33601;33602;33603	33603					0.0842542460554796
ITTLASRLL	9	Unmodified	_ITTLASRLL_					0	0	0			REV__nc|ENSG00000129493|Q86XA9|HEATR5A	REV__nc|ENSG00000129493|Q86XA9|HEATR5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2893981933594	2	494.313492	986.612431	0.10815	5.346E-05	-1.6005	-0.00079113	-1.4923	-0.00073767	494.3126488884502	61.187	0.21772	61.258	61.058	61.276	0.071125					6	5	2	0	0	0	0.024405	1	6983	6983		44.117	6.9577	1	95810	+		29063	23050	20018	20058	33604	33604					0.11858906374061462
ITTLDTNVTV	10	Unmodified	_ITTLDTNVTV_					0	0	0			REV__ENST00000589644.1_1_19:38798235-38799514:-|nuORF	REV__ENST00000589644.1_1_19:38798235-38799514:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7835083007812	2	538.795329	1075.5761	1.4265	0.00076862	-0.27521	-0.00014828	1.1513	0.00062033	538.7951417607293	19.765	1.0224	19.831	19.242	20.264	0.066193					25	20	2	0	0	0	0.03519	1	353	353		63.534	15.574	1	30575	+		29064	26170	20019	20059	33605	33605					0.041339846866549124
ITTLDTNVTV	10	Unmodified	_ITTLDTNVTV_					0	0	0			REV__ENST00000589644.1_1_19:38798235-38799514:-|nuORF	REV__ENST00000589644.1_1_19:38798235-38799514:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.795329	1075.5761	-0.047404	-2.5541E-05	-1.4059	-0.00075749	-1.4533	-0.00078303	538.7956320329671	19.559	0.51504	19.559	19.414	19.929	0	-0.1361	-0.000764	NaN	63.534	10	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27252	+		29065	26170	20019	20059							0.041339846866549124
ITTLIVSKP	9	Unmodified	_ITTLIVSKP_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	ENSG00000004939|ENST00000262418|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.29034423828125	2	486.310418	970.606283	-0.6567	-0.00031936	0.7587	0.00036896	0.10199	4.9599E-05	486.31016006107666	27.553	0.48139	27.553	27.323	27.804	0					25	12	3	0	0	0	0.024436	1	1517	1517		30.504	0	1	242660			29066	752	20020	20060	33606	33606					0.11980388142524134
ITTLVKGQLG	10	Unmodified	_ITTLVKGQLG_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3196411132812	2	515.318774	1028.623	0.40352	0.00020794	3.2354	0.0016672	3.6389	0.0018752	515.3200488056799	71.962	1.141	71.673	71.113	72.254	-0.28858					78	29	4	0	0	0	0.31896	2	8709	8698;8709		107.01	16.231	1	3865500			29067	2021	20021	20061	33607;33608	33608					0.1098288902846889
ITTMKVVNL	9	Unmodified	_ITTMKVVNL_					0	0	0			REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.80413818359375	2	509.801903	1017.58925	0.50937	0.00025968	3.0016	0.0015302	3.5109	0.0017899	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.77768	1	10869	10869		40.778	9.2484	1	2754700	+		29068	27431	20022	20062	33609	33609					0.08116144265068215
ITTMKVVNL	9	Unmodified	_ITTMKVVNL_					0	0	0			REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	REV__RFX7|p.G684Wfs*7|1|0.25|ENSG00000181827|chr15:56095387-56095388|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2792663574219	2	509.801903	1017.58925	-1.5265	-0.0007782	-2.56	-0.0013051	-4.0865	-0.0020833	509.80039949115724	90.902	0.87383	90.902	90.594	91.468	0					51	20	4	0	0	0	0.022083	1	11524	11524		87.754	0	1	1777300	+		29069	27431	20022	20062	33610	33610					0.08116144265068215
ITTPIVLSS	9	Unmodified	_ITTPIVLSS_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.779052734375	2	465.778951	929.543348	0.069879	3.2548E-05	-0.10686	-4.9775E-05	-0.036985	-1.7227E-05	465.7787863236272	91.676	1.2661	91.537	91.231	92.497	-0.13941					81	29	4	0	0	0	0.6504	1	11264	11264		49.442	0	1	2112400	+		29070	20580	20023	20063	33611	33611					0.07575822354476713
ITTTETPSSST	11	Unmodified	_ITTTETPSSST_					0	0	0		nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.7685546875	2	562.769508	1123.52446	-0.10087	-5.6766E-05	0.53138	0.00029905	0.43052	0.00024228	562.769552585789	63.122	0.57569	62.864	62.663	63.239	-0.25824					31	13	3	0	0	0	0.95882	1	7102	7102		45.972	3.5761	1	1249600			29071	7985	20024	20064	33612	33612					-0.03235803797883818
ITTVFLFA	8	Unmodified	_ITTVFLFA_					0	0	0		ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3;ENST00000546151.5_1_11:61120455-61125280:-|nuORF	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.8880920410156	2	456.265479	910.516405	-0.82333	-0.00037566	3.3974	0.0015501	2.5741	0.0011745	456.26864577793054	37.956	0.25014	37.737	37.644	37.894	-0.21848					11	6	2	0	0	0	0.027866	1	3064	3064		35.201	14.719	1	126990			29072	6921	20025	20065	33613	33613					0.05756758533959783
ITTVGYGYTT	10	Unmodified	_ITTVGYGYTT_					0	0	0		ENSG00000099337|ENST00000263372|KCNK6	ENSG00000099337|ENST00000263372|KCNK6	ENSG00000099337|ENST00000263372|KCNK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3269653320312	2	538.268947	1074.52334	-0.11022	-5.9326E-05	-3.9902	-0.0021478	-4.1004	-0.0022071	538.2674595350361	99.684	0.21033	99.684	99.535	99.746	0					5	4	2	0	0	0	0.03519	1	12734	12734		49.442	21.559	1	58638			29073	2072	20026	20066	33614	33614					-0.010939733761233583
ITTVGYGYTT	10	Unmodified	_ITTVGYGYTT_					0	0	0		ENSG00000099337|ENST00000263372|KCNK6	ENSG00000099337|ENST00000263372|KCNK6	ENSG00000099337|ENST00000263372|KCNK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.3271484375	2	538.268947	1074.52334	0.31985	0.00017217	-4.3163	-0.0023234	-3.9965	-0.0021512	538.267046179676	99.774	0.34007	99.639	99.379	99.719	-0.13526					10	7	2	0	0	0	0.03519	1	12363	12363		56.721	12.604	1	43087			29074	2072	20026	20066	33615	33615					-0.010939733761233583
ITTYYSLY	8	Unmodified	_ITTYYSLY_					0	0	0			REV__CON__A2VCT4;REV__ENSG00000196859|ENST00000355612|KRT39	REV__CON__A2VCT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.25439453125	2	512.255308	1022.49606	-0.65531	-0.00033569	-4.0224	-0.0020605	-4.6777	-0.0023962	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.43637	2	5855	5855;5867		92.191	20.313	1	53582000	+	+	29075	19521;19593	20027	20067	33616;33617	33616					-0.014284569165170069
ITVFNIPPK	9	Unmodified	_ITVFNIPPK_					0	0	0		ENST00000297423.8_1_8:48648356-48648437:+|nuORF	ENST00000297423.8_1_8:48648356-48648437:+|nuORF	ENST00000297423.8_1_8:48648356-48648437:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8046875	2	514.810585	1027.60662	-0.68859	-0.00035449	-2.6172	-0.0013474	-3.3058	-0.0017018	514.8086139995844	48.155	0.69603	48.002	47.702	48.398	-0.15301					60	20	4	0	0	0	0.20967	1	4871	4871		87.754	13.499	1	3699400			29076	11863	20028	20068	33618	33618					0.09391807862357382
ITVGRFFV	8	Unmodified	_ITVGRFFV_					0	0	0			REV__ENST00000531791.1_1_11:65143880-65144565:-|nuORF	REV__ENST00000531791.1_1_11:65143880-65144565:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.25579833984375	2	469.776545	937.538538	0.74788	0.00035134	-1.3675	-0.00064242	-0.61963	-0.00029109	469.77598976873105	76.861	0.53263	76.875	76.654	77.187	0.013496					14	12	2	0	0	0	0.027866	1	9427	9427		20.947	13.754	1	291460	+		29077	25422	20029	20069	33619	33619					0.06726983002374709
ITVNFVGK	8	Unmodified	_ITVNFVGK_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.23602294921875	2	439.260728	876.506903	-0.27404	-0.00012037	4.1495	0.0018227	3.8755	0.0017023	439.2623396848768	25.533	0.61707	25.362	25.081	25.698	-0.17078					27	14	3	0	0	0	0.027866	1	1231	1231		35.618	18.253	1	278360			29078	9328	20030	20070	33620	33620					0.06370990248433372
ITVNRLFLD	9	Unmodified	_ITVNRLFLD_					0	0	0			REV__ENST00000398844.6_1_5:134060788-134060881:+|nuORF	REV__ENST00000398844.6_1_5:134060788-134060881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.8162841796875	2	545.816399	1089.61824	-0.55171	-0.00030113	-0.40058	-0.00021864	-0.95229	-0.00051977	545.8162202685157	67.143	1.6595	66.919	66.626	68.285	-0.22374					130	42	5	0	0	0	0.15388	1	7769	7769		98.582	4.9844	1	32880000	+		29079	31812	20031	20071	33621	33621					0.07702004885709357
ITVPILLML	9	Unmodified	_ITVPILLML_					0	0	0			REV__ENSG00000203661|ENST00000641363|OR2T5	REV__ENSG00000203661|ENST00000641363|OR2T5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8109130859375	2	506.827389	1011.64023	-0.21099	-0.00010694	2.1926	0.0011113	1.9816	0.0010043	506.8284984405233	45.335	0.34425	45.083	44.981	45.325	-0.25252					16	9	2	0	0	0	0.024535	1	4302	4302		25.45	17.219	1	125460	+		29080	27508	20032	20072	33622	33622					0.13487093309925058
ITVPVIEP	8	Unmodified	_ITVPVIEP_					0	0	0			REV__HMCN1|p.G92V|1|0.18|ENSG00000143341|chr1:185846032-185846032|G/T|missense_variant	REV__HMCN1|p.G92V|1|0.18|ENSG00000143341|chr1:185846032-185846032|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.262936	866.51132	-0.66104	-0.00028706	-2.2967	-0.00099737	-2.9577	-0.0012844	434.2616212921153	37.886	0.5629	37.919	37.639	38.202	0.032269					21	15	2	0	0	0	0.027866	1	3109	3109		12.207	0	1	110630	+		29081	36133	20033	20073	33623	33623					0.07272454671328887
ITVQRDIS	8	Unmodified	_ITVQRDIS_					0	0	0			REV__ENST00000437262.1_1_21:40543078-40543174:-|nuORF	REV__ENST00000437262.1_1_21:40543078-40543174:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2634582519531	2	466.263999	930.513445	-1.0918	-0.00050906	-0.32943	-0.0001536	-1.4212	-0.00066266	466.2639071491436	37.918	2.4894	37.699	36.989	39.479	-0.21848					154	67	5	0	0	0	0.53523	1	3052	3052		82.305	0	1	65965000	+		29082	32475	20034	20074	33624	33624					0.04540883409140406
ITVRKKCKV	9	Unmodified	_ITVRKKCKV_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.304931640625	2	537.844436	1073.67432	-0.47327	-0.00025454	-2.9755	-0.0016004	-3.4488	-0.0018549	537.843518565397	68.639	0.18755	68.658	68.499	68.686	0.018913					5	4	2	0	0	0	0.024511	1	8153	8153		19.104	0	1	56525	+		29083	21876	20035	20075	33625	33625					0.14042934521535244
ITVRRLSSP	9	Unmodified	_ITVRRLSSP_					0	0	0			REV__ENSG00000118308|ENST00000556887|IRAG2	REV__ENSG00000118308|ENST00000556887|IRAG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2987670898438	2	514.81419	1027.61383	-0.27376	-0.00014094	0.68916	0.00035479	0.4154	0.00021385	514.8146077178945	95.55	0.82903	95.399	95.098	95.927	-0.15186					28	18	2	0	0	0	0.024397	1	11776	11776		24.519	2.5593	1	75711	+		29084	22398	20036	20076	33626	33626					0.10112540462819197
ITVSGETPVSL	11	Unmodified	_ITVSGETPVSL_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.8057861328125	2	551.803154	1101.59175	0.1156	6.3786E-05	4.3681	0.0024103	4.4837	0.0024741	551.8053917699496	71.608	1.1427	71.333	71.056	72.198	-0.27509					73	27	4	0	0	0	0.75995	1	8380	8380		60.118	8.7828	1	3563200	+		29085	24950	20037	20077	33627	33627					0.04502271203705277
ITVSTSVLK	9	Unmodified	_ITVSTSVLK_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.2493591308594	2	474.292225	946.569897	0.98203	0.00046577	-3.6489	-0.0017306	-2.6669	-0.0012649	474.29056115036065	49.035	0.5004	49.035	48.899	49.399	0					19	13	2	0	0	0	0.024539	1	5097	5097		27.882	3.6795	1	175950	+		29086	23025	20038	20078	33628	33628					0.09447511245798523
ITVSYAFKK	9	Unmodified	_ITVSYAFKK_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7303466796875	2	528.808042	1055.60153	-0.031326	-1.6565E-05	-3.7893	-0.0020038	-3.8207	-0.0020204	528.8059337419015	50.589	0.77752	50.477	50.082	50.859	-0.11163					34	20	3	0	0	0	0.024457	1	5197	5197		37.159	12.64	1	1078300			29087	5639	20039	20079	33629	33629					0.075955039997325
ITVSYAFKK	9	Unmodified	_ITVSYAFKK_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.808042	1055.60153	-1.0849	-0.00057369	-3.1686	-0.0016756	-4.2534	-0.0022493	528.8064035055547	50.462	0.74569	50.462	50.21	50.956	0	-0.031145	0.00042317	NaN	37.159	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1580900			29088	5639	20039	20079							0.075955039997325
ITVVQDTPE	9	Unmodified	_ITVVQDTPE_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2919921875	2	501.261122	1000.50769	-1.1008	-0.00055177	-0.96317	-0.0004828	-2.0639	-0.0010346	501.26172950806887	45.753	0.2141	45.55	45.492	45.706	-0.20226					6	5	2	0	0	0	0.024397	1	4348	4348		24.519	0	1	94086			29089	9199	20040	20080	33630	33630					0.00745740106822268
ITVVSITY	8	Unmodified	_ITVVSITY_					0	0	0		ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2587890625	2	448.260394	894.506234	0.74944	0.00033594	-3.8922	-0.0017447	-3.1428	-0.0014088	448.2585106257318	89.09	1.8304	89.069	88.61	90.44	-0.021645					94	43	4	0	0	0	1.0574	1	11223	11223		26.796	1.3459	1	7259500			29090	10417	20041	20081	33631	33631					0.054761508087040056
ITVVSITY	8	Unmodified	_ITVVSITY_					0	0	0		ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2585144042969	2	448.260394	894.506234	0.35148	0.00015756	-3.5036	-0.0015705	-3.1521	-0.0014129	448.2586890631354	89.096	1.4611	89.112	88.623	90.084	0.015907					87	34	4	0	0	0	1.0574	1	11159	11159		26.796	1.3459	1	7395300			29091	10417	20041	20081	33632	33632					0.054761508087040056
ITVVTKLSP	9	Unmodified	_ITVVTKLSP_					0	0	0			REV__SH3BP4|p.F488L|1|0.27|ENSG00000130147|chr2:235042233-235042233|C/G|missense_variant	REV__SH3BP4|p.F488L|1|0.27|ENSG00000130147|chr2:235042233-235042233|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2798156738281	2	479.302593	956.590633	1.2482	0.00059829	-1.222	-0.00058568	0.026294	1.2603E-05	479.3017832053651	58.97	0.39505	58.97	58.75	59.145	0					27	10	3	0	0	0	0.022482	1	6711	6711		93.143	7.9824	1	489150	+		29092	37485	20042	20082	33633	33633					0.11060101625469088
ITVVTKLSP	9	Unmodified	_ITVVTKLSP_					0	0	0			REV__SH3BP4|p.F488L|1|0.27|ENSG00000130147|chr2:235042233-235042233|C/G|missense_variant	REV__SH3BP4|p.F488L|1|0.27|ENSG00000130147|chr2:235042233-235042233|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2799987792969	2	479.302593	956.590633	0.46114	0.00022102	2.1934	0.0010513	2.6545	0.0012723	479.3041496756891	58.792	0.6923	58.881	58.446	59.138	0.089638					31	18	3	0	0	0	0.018452	1	6597	6597		98.629	0	1	488710	+		29093	37485	20042	20082	33634	33634					0.11060101625469088
ITWADNSL	8	Unmodified	_ITWADNSL_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.22796630859375	2	460.229625	918.444697	-0.69693	-0.00032075	-3.3769	-0.0015541	-4.0738	-0.0018749	460.227940824673	25.5	0.95162	25.466	25.201	26.152	-0.034395					56	22	4	0	0	0	0.6248	1	1215	1215		73.975	2.679	1	1859100			29094	1353	20043	20083	33635	33635					-0.017787808905836755
ITWEAEAH	8	Unmodified	_ITWEAEAH_					0	0	0		ENST00000340703.5_1_4:9694764-9704575:+|nuORF	ENST00000340703.5_1_4:9694764-9704575:+|nuORF	ENST00000340703.5_1_4:9694764-9704575:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26397705078125	2	478.727249	955.439946	0.32403	0.00015512	2.9546	0.0014144	3.2786	0.0015695	478.7284237833719	39.011	0.85528	39.011	38.639	39.495	0					38	23	2	0	0	0	0.027866	1	3274	3274		44.531	11.015	1	179540			29095	12475	20044	20084	33636	33636					-0.039556650333452126
ITWQALNL	8	Unmodified	_ITWQALNL_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MSMS	OPSCC_39_ClassI_Rep-2	2	479.7695617675781	2	479.77146	957.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.868	1	51.721	51.221	52.221	-0.14735								0	0	0	0.34661	1	5501	5501		90.777	3.0224	1				29096	1362	20045	20085	33637	33637					0.04790375277127623
ITYARECYGR	10	Unmodified	_ITYARECYGR_					0	0	0			REV__ENSG00000171608|ENST00000377346|PIK3CD	REV__ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.2120666503906	3	411.201124	1230.58154	0.13437	5.5252E-05	0.028838	1.1858E-05	0.16321	6.711E-05	411.53525152399743	46.809	0.1461	46.712	46.608	46.754	-0.096649					5	3	2	0	0	0	0.03519	1	4530	4530		38.754	0	1	33492	+		29097	26584	20046	20086	33638	33638					-0.024526150025167226
ITYDHVRDQ	9	Unmodified	_ITYDHVRDQ_					0	0	0		GPR158|p.S819I|1|0.15|ENSG00000151025|chr10:25598082-25598082|G/T|missense_variant	GPR158|p.S819I|1|0.15|ENSG00000151025|chr10:25598082-25598082|G/T|missense_variant	GPR158|p.S819I|1|0.15|ENSG00000151025|chr10:25598082-25598082|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.3012084960938	2	573.780544	1145.54654	0.42864	0.00024595	2.2385	0.0012844	2.6671	0.0015303	573.7814965840539	67.19	1.0117	66.941	66.695	67.707	-0.24839					56	24	3	0	0	0	0.024506	1	7824	7824		23.042	13.337	1	486190			29098	17689	20047	20087	33639	33639					-0.020415345388073547
ITYGLSVLNSY	11	Unmodified	_ITYGLSVLNSY_					0	0	0			REV__ZNF546|p.F366Kfs*10|1|0.12|ENSG00000187187|chr19:40014364-40014365|-/TAAAGGCTTTCCCACATTCCTTACA|frameshift_variant	REV__ZNF546|p.F366Kfs*10|1|0.12|ENSG00000187187|chr19:40014364-40014365|-/TAAAGGCTTTCCCACATTCCTTACA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.58221435546875	3	410.551928	1228.63395	-0.45469	-0.00018667	0.38487	0.00015801	-0.069813	-2.8662E-05	410.5519944366862	34.991	0.71372	34.969	34.712	35.426	-0.021763					29	18	2	0	0	0	0.024734	1	2645	2645		24.276	0.04411	1	99394	+		29099	27921	20048	20088	33640	33640					0.028782466120901518
ITYHQLLV	8	Unmodified	_ITYHQLLV_					0	0	0		ACSS2|p.P269Qfs*69|1|0.29|ENSG00000131069|chr20:34914403-34914403|C/-|frameshift_variant;ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ACSS2|p.P269Qfs*69|1|0.29|ENSG00000131069|chr20:34914403-34914403|C/-|frameshift_variant	ACSS2|p.P269Qfs*69|1|0.29|ENSG00000131069|chr20:34914403-34914403|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.305908203125	2	493.78711	985.559667	1.0855	0.000536	-2.4045	-0.0011873	-1.319	-0.00065131	493.78570443970716	59.934	1.2157	59.934	59.257	60.473	0					74	32	4	0	0	0	0.027866	1	6764	6764		60.972	16.855	1	3637500			29100	19	20049	20089	33641	33641					0.06630948311237717
ITYIPKQLI	9	Unmodified	_ITYIPKQLI_					0	0	0			REV__ENSG00000203733|ENST00000450456|GJE1	REV__ENSG00000203733|ENST00000450456|GJE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3246459960938	2	544.839342	1087.66413	-0.39236	-0.00021378	-0.71773	-0.00039105	-1.1101	-0.00060482	544.8393102989006	68.344	0.56816	68.363	68.118	68.686	0.018913					33	14	3	0	0	0	0.024367	1	8119	8119		52.937	3.7259	1	892880	+		29101	28542	20050	20090	33642	33642					0.12380650067939314
ITYLKAEKN	9	Unmodified	_ITYLKAEKN_					0	0	0			REV__ENSG00000146918|ENST00000356309|NCAPG2	REV__ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.314453125	2	540.308406	1078.60226	-0.30434	-0.00016444	0.026257	1.4187E-05	-0.27808	-0.00015025	540.3083912995808	72.712	1.2141	72.447	72.042	73.256	-0.26479					101	28	5	0	0	0	0.15366	1	8611	8611		98.629	4.623	1	9780500	+		29102	24521	20051	20091	33643	33643					0.0661029864882039
ITYQHIDRW	9	Unmodified	_ITYQHIDRW_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000588299.1_1_19:39123221-39123365:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.21246337890625	3	411.212128	1230.61456	0.14351	5.9014E-05	-0.29026	-0.00011936	-0.14675	-6.0343E-05	411.2119864889532	46.723	0.94661	46.626	46.331	47.278	-0.096649					73	25	4	0	0	0	0.24031	2	4520	4520;4542		83.647	9.392	1	7305800			29103	8854	20052	20092	33644;33645	33644					0.008473351118254868
ITYQHIDRW	9	Unmodified	_ITYQHIDRW_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000588299.1_1_19:39123221-39123365:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.2121276855469	3	411.212128	1230.61456	0.27581	0.00011342	-0.35288	-0.00014511	-0.077066	-3.169E-05	411.2119483299425	47.124	0.93721	46.855	46.561	47.498	-0.26939					75	25	4	0	0	0	0.28047	1	4569	4569		78.264	1.4896	1	7981700			29104	8854	20052	20092	33646	33646					0.008473351118254868
ITYQHIDRW	9	Unmodified	_ITYQHIDRW_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENST00000588299.1_1_19:39123221-39123365:+|nuORF	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.21221923828125	3	411.212128	1230.61456	-0.29807	-0.00012257	0.19069	7.8412E-05	-0.10738	-4.4156E-05	411.2121952543009	46.87	0.8516	46.676	46.38	47.232	-0.19387					70	23	4	0	0	0	0.20652	1	4530	4530		88.177	31.456	1	7544900			29105	8854	20052	20092	33647	33647					0.008473351118254868
ITYQLGFF	8	Unmodified	_ITYQLGFF_					0	0	0			REV__nc|ENSG00000186575|P35240-5|NF2	REV__nc|ENSG00000186575|P35240-5|NF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2494812011719	2	494.760561	987.506569	0.035921	1.7772E-05	-0.61381	-0.00030369	-0.57789	-0.00028592	494.76035631800744	68.887	0.40423	68.657	68.439	68.844	-0.23048					16	9	3	0	0	0	0.027866	1	7969	7969		60.972	6.1956	1	135160	+		29106	27868	20053	20093	33648	33648					0.012315705285800504
ITYSLAQNP	9	Unmodified	_ITYSLAQNP_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2478942871094	2	503.763832	1005.51311	-0.99357	-0.00050052	-0.071311	-3.5924E-05	-1.0649	-0.00053645	503.7635065040522	60.662	0.63629	60.741	60.611	61.247	0.078888					22	16	2	0	0	0	0.022083	1	6972	6972		56.721	0	1	336550			29107	8197	20054	20094	33649	33649					0.010574636892783928
ITYSPPRPE	9	Unmodified	_ITYSPPRPE_					0	0	0			REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.27734375	2	530.277106	1058.53966	-0.49955	-0.0002649	1.0183	0.00054	0.51878	0.0002751	530.2773461568727	57.936	0.95255	57.759	57.281	58.233	-0.17775					74	23	5	0	0	0	0.30449	2	6352	6352;6361		75.043	3.1983	1	12046000	+		29108	21156	20055	20095	33650;33651	33650					0.012731525806202626
ITYVKGDLF	9	Unmodified	_ITYVKGDLF_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2587280273438	2	528.292225	1054.5699	-0.26146	-0.00013813	-1.3113	-0.00069275	-1.5728	-0.00083087	528.2908964961156	61.677	0.37184	61.463	61.252	61.624	-0.21375					16	8	3	0	0	0	0.022756	1	6921	6921		90.777	0	1	136060			29109	14797	20056	20096	33652	33652					0.044795112457904906
ITYVKGDLF	9	Unmodified	_ITYVKGDLF_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.292225	1054.5699	-0.3519	-0.0001859	-6.869	-0.0036288	-7.2209	-0.0038147	528.2892700202077	61.36	0.21609	61.133	60.937	61.153	-0.22663	-0.23785	-0.0054513	NaN	90.777	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77101			29110	14797	20056	20096							0.044795112457904906
ITYVKGDLF	9	Unmodified	_ITYVKGDLF_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.292225	1054.5699	-1.1135	-0.00058828	-0.018541	-9.7952E-06	-1.1321	-0.00059807	528.2918311011256	61.587	0.41341	61.409	61.162	61.576	-0.17782	0.03833	0.0017868	NaN	90.777	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90437			29111	14797	20056	20096							0.044795112457904906
ITYVKGDLF	9	Unmodified	_ITYVKGDLF_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF;ENSG00000124596|ENST00000424266|OARD1	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.292225	1054.5699	-0.19402	-0.0001025	-1.5258	-0.00080609	-1.7199	-0.00090859	528.2903301532804	61.735	0.56883	61.478	61.175	61.744	-0.25725	0.107	0.00019424	NaN	90.777	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105520			29112	14797	20056	20096							0.044795112457904906
IVAARFWLE	9	Unmodified	_IVAARFWLE_					0	0	0			REV__ENST00000497699.1_1_10:28970877-28971327:+|nuORF	REV__ENST00000497699.1_1_10:28970877-28971327:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8180541992188	2	552.813659	1103.61277	-0.95261	-0.00052662	-2.2535	-0.0012457	-3.2061	-0.0017724	552.8127196621094	39.032	0.39104	38.933	38.772	39.163	-0.098755					22	10	3	0	0	0	0.024506	1	3320	3320		23.042	4.7804	1	792020	+		29113	20973	20057	20097	33653	33653					0.06510326093916774
IVAAVLVKAE	10	Unmodified	_IVAAVLVKAE_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2739562988281	2	506.823692	1011.63283	-0.47991	-0.00024323	-0.3881	-0.0001967	-0.86802	-0.00043993	506.82341787672044	67.159	0.48255	66.878	66.672	67.154	-0.28148					18	11	2	0	0	0	0.03519	1	8005	8005		26.693	0	1	483840			29114	1474	20058	20098	33654	33654					0.1274807703384795
IVADGALPL	9	Unmodified	_IVADGALPL_					0	0	0			REV__ENST00000521369.2_1_8:107282449-107284274:+|nuORF	REV__ENST00000521369.2_1_8:107282449-107284274:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.8025207519531	2	434.760561	867.506569	-0.47604	-0.00020696	1.0001	0.00043479	0.52403	0.00022783	434.76083487954145	66.471	0.73515	66.247	65.742	66.478	-0.22374					41	18	3	0	0	0	0.024386	1	7573	7573		42.474	1.9018	1	440540	+		29115	34314	20059	20099	33655	33655					0.06751570528570028
IVAEIIKKV	9	Unmodified	_IVAEIIKKV_					0	0	0		PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2740173339844	2	506.841885	1011.66922	-0.32335	-0.00016389	-0.24501	-0.00012418	-0.56836	-0.00028807	506.84172151444216	66.82	2.256	66.82	66.461	68.717	0					100	57	2	0	0	0	0.024319	1	8005	8005		66.429	17.218	1	518030			29116	19003	20060	20100	33656	33656					0.16384953930571555
IVAEIIKKV	9	Unmodified	_IVAEIIKKV_					0	0	0		PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.274169921875	2	506.841885	1011.66922	-0.20558	-0.00010419	-0.18426	-9.3392E-05	-0.38984	-0.00019759	506.84167507889106	67.291	1.8909	67.002	66.518	68.409	-0.28834					109	47	3	0	0	0	0.023837	1	8018	8018		54.776	24.459	1	411480			29117	19003	20060	20100	33657	33657					0.16384953930571555
IVAEIIKKV	9	Unmodified	_IVAEIIKKV_					0	0	0		PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.82745361328125	2	506.841885	1011.66922	-0.0020978	-1.0633E-06	-0.50211	-0.00025449	-0.50421	-0.00025555	506.84148765603135	66.999	2.1747	67.023	66.517	68.691	0.023911					107	54	3	0	0	0	0.024209	1	7994	7994		47.657	0	1	379010			29118	19003	20060	20100	33658	33658					0.16384953930571555
IVAESLQQV	9	Unmodified	_IVAESLQQV_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.77899169921875	2	493.779482	985.544411	0.10884	5.3742E-05	-0.41334	-0.0002041	-0.3045	-0.00015036	493.7792661854307	57.476	0.71196	57.476	56.968	57.68	0					58	18	5	0	0	0	0.16468	1	6429	6429		96.19	18.873	1	15384000			29119	3443	20061	20101	33659	33659					0.05106036723395846
IVAFLFLMV	9	Unmodified	_IVAFLFLMV_					0	0	0			REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2691650390625	2	526.814282	1051.61401	0.14711	7.7501E-05	-0.54374	-0.00028645	-0.39663	-0.00020895	526.8136938813163	49.413	0.41917	49.231	49	49.419	-0.18206					16	10	2	0	0	0	0.024475	1	4957	4957		29.842	0	1	278370	+		29120	26529	20062	20102	33660	33660					0.09026824138459233
IVAGFFEPF	9	Unmodified	_IVAGFFEPF_					0	0	0			REV__ENSG00000038002|ENST00000264595|AGA	REV__ENSG00000038002|ENST00000264595|AGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8367309570312	2	513.768386	1025.52222	-0.26206	-0.00013464	0.97019	0.00049845	0.70813	0.00036381	514.2696367933979	68.261	0.22821	68.261	68.179	68.407	0					7	5	2	0	0	0	0.024466	1	8200	8200		18.324	0	1	114040	+		29121	20073	20063	20103	33661	33661					0.010478570456143643
IVAGRVNI	8	Unmodified	_IVAGRVNI_					0	0	0		ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.2377014160156	2	421.266345	840.518136	-0.18483	-7.7863E-05	0.86191	0.0003631	0.67708	0.00028523	421.26646045501656	32.238	0.34577	32.3	32.045	32.39	0.062889					12	8	2	0	0	0	0.027866	1	2174	2174		8.8223	0	1	24819			29122	5620	20064	20104	33662	33662					0.09149812342559471
IVAILSLTE	9	Unmodified	_IVAILSLTE_					0	0	0		ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.75030517578125	2	479.794601	957.574648	-0.32835	-0.00015754	-0.50268	-0.00024118	-0.83103	-0.00039872	479.79345157543185	30.342	0.45585	30.351	30.082	30.538	0.0086708					16	10	3	0	0	0	0.024262	1	1946	1946		57.811	7.7867	1	85201			29123	13775	20065	20105	33663	33663					0.09416395388575438
IVAILSLTE	9	Unmodified	_IVAILSLTE_					0	0	0		ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	479.794601	957.574648	-0.0035891	-1.722E-06	-3.1072	-0.0014908	-3.1108	-0.0014926	479.79304926559524	30.587	0.50228	30.343	30.122	30.624	-0.24415	-0.00032834	-0.00020686	NaN	57.811	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1471500			29124	13775	20065	20105							0.09416395388575438
IVAILSLTE	9	Unmodified	_IVAILSLTE_					0	0	0		ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	ENST00000409381.5_1_2:150327439-150327625:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	479.794601	957.574648	-0.76251	-0.00036585	-2.3207	-0.0011134	-3.0832	-0.0014793	479.7932960856951	30.519	0.50027	30.341	30.083	30.583	-0.17817	-0.0021389	0.00054793	NaN	57.811	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1239600			29125	13775	20065	20105							0.09416395388575438
IVAINGESAE	10	Unmodified	_IVAINGESAE_					0	0	0		nc|ENSG00000120913|Q96JY6-5|PDLIM2;nc|ENSG00000120913|Q96JY6-2|PDLIM2;nc|ENSG00000120913|Q96JY6-4|PDLIM2;ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8050842285156	2	501.758746	1001.50294	0.67771	0.00034005	-1.2919	-0.00064822	-0.61418	-0.00030817	501.7578344960237	60.016	0.40186	60.016	59.779	60.181	0					18	10	2	0	0	0	0.03519	1	6866	6866		15.642	0	1	187590			29126	18220	20066	20106	33664	33664					0.0022485596406340846
IVAIQLVRQG	10	Unmodified	_IVAIQLVRQG_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.2794799804688	2	548.84549	1095.67643	0.22833	0.00012532	2.4717	0.0013566	2.7001	0.0014819	548.8471672926794	78.062	0.20989	77.87	77.723	77.933	-0.1921					6	4	2	0	0	0	0.03519	1	9600	9600		11.511	0	1	85943	+		29127	28095	20067	20107	33665	33665					0.1324168653097786
IVAITQVTSVF	11	Unmodified	_IVAITQVTSVF_					0	0	0		ENSG00000196184|ENST00000423932|OR10J1;nc|ENSG00000196184|P30954|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3429565429688	2	589.344989	1176.67542	-2.3876	-0.0014071	-1.1613	-0.0006844	-3.5489	-0.0020915	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0392	1	11334	11334		28.081	1.0342	1	4758600			29128	9831	20068	20108	33666	33666					0.09415427371413898
IVAKVTTRKG	10	Unmodified	_IVAKVTTRKG_					0	0	0			REV__ENST00000453682.1_1_X:12863046-12863286:-|nuORF	REV__ENST00000453682.1_1_X:12863046-12863286:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.27880859375	2	536.84549	1071.67643	-1.0366	-0.00055651	0.96582	0.0005185	-0.0708	-3.8008E-05	536.8458523457415	24.775	0.53083	24.775	24.563	25.094	0					26	11	3	0	0	0	0.03519	1	1098	1098		44.377	1.981	1	171210	+		29129	32752	20069	20109	33667	33667					0.14345686530987223
IVALANLRPA	10	Unmodified	_IVALANLRPA_					0	0	0		ENSG00000134146|ENST00000256538|DPH6;ENST00000559585.5_1_15:35782392-35838342:-|nuORF;ENST00000560526.1_1_15:35830456-35838342:-|nuORF;ENST00000559784.5_1_15:35703087-35834683:-|nuORF;nc|ENSG00000134146|Q7L8W6-2|DPH6	ENSG00000134146|ENST00000256538|DPH6	ENSG00000134146|ENST00000256538|DPH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7321166992188	2	519.326934	1036.63931	-0.61772	-0.0003208	0.60881	0.00031617	-0.0089183	-4.6315E-06	519.3269529116601	57.119	0.45089	57.214	56.978	57.429	0.09531					27	11	3	0	0	0	0.03519	1	6299	6299		38.806	14.603	1	273670			29130	4759	20070	20110	33668	33668					0.12246014985225884
IVALYRIL	8	Unmodified	_IVALYRIL_					0	0	0		ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.80096435546875	2	480.81567	959.616788	-0.1477	-7.1017E-05	-0.72526	-0.00034872	-0.87296	-0.00041973	480.8141844143056	94.11	0.19723	94.109	93.992	94.189	-0.00023651					6	4	2	0	0	0	0.027866	1	11925	11925		21.702	9.4955	1	59723			29131	4040	20071	20111	33669	33669					0.13536415587611828
IVANALLLVP	10	Unmodified	_IVANALLLVP_					0	0	0		ENSG00000142484|ENST00000270560|TM4SF5	ENSG00000142484|ENST00000270560|TM4SF5	ENSG00000142484|ENST00000270560|TM4SF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2634582519531	2	511.83406	1021.65357	-0.45931	-0.00023509	0.057771	2.9569E-05	-0.40154	-0.00020552	511.83380127136644	78.694	1.339	78.694	78.405	79.744	0					56	31	2	0	0	0	0.03519	1	9822	9822		37.159	11.709	1	234420			29132	5562	20072	20112	33670	33670					0.14360667413518513
IVANALLLVP	10	Unmodified	_IVANALLLVP_					0	0	0		ENSG00000142484|ENST00000270560|TM4SF5	ENSG00000142484|ENST00000270560|TM4SF5	ENSG00000142484|ENST00000270560|TM4SF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2633972167969	2	511.83406	1021.65357	-0.42216	-0.00021607	0.18733	9.5881E-05	-0.23483	-0.00012019	511.83380823205465	78.871	1.4621	78.679	78.298	79.76	-0.19211					63	34	2	0	0	0	0.03519	1	9809	9809		23.042	12.777	1	206000			29133	5562	20072	20112	33671	33671					0.14360667413518513
IVANKMDI	8	Unmodified	_IVANKMDI_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2521057128906	2	452.252046	902.489538	-0.55977	-0.00025316	1.3807	0.00062444	0.82096	0.00037128	452.2525995172372	104.54	0.86827	104.41	104.18	105.05	-0.12927					62	26	4	0	0	0	0.74904	1	13015	13015		63.306	8.5416	1	1140700	+		29134	19170	20073	20113	33672	33672					0.0343932665111879
IVANKMDI	8	Unmodified	_IVANKMDI_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	452.252046	902.489538	0.50926	0.00023031	1.4536	0.00065741	1.9629	0.00088772	452.2528512741183	104.67	0.59851	104.67	104.42	105.02	0	0.11567	0.00037637	NaN	63.306	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162100	+		29135	19170	20073	20113							0.0343932665111879
IVANKMDI	8	Unmodified	_IVANKMDI_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.252046	902.489538	0.21431	9.692E-05	2.0312	0.00091862	2.2455	0.0010155	452.2531378567185	104.66	0.56181	104.66	104.4	104.96	0.00096893	0.10119	0.0008988	NaN	63.306	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129010	+		29136	19170	20073	20113							0.0343932665111879
IVANKMDI	8	Unmodified	_IVANKMDI_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	452.252046	902.489538	0.27144	0.00012276	1.3785	0.00062344	1.65	0.0007462	452.25281315268893	104.76	0.57264	104.76	104.47	105.05	-0.0015945	0.20463	0.00030844	NaN	63.306	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176910	+		29137	19170	20073	20113							0.0343932665111879
IVANKMDI	8	Unmodified	_IVANKMDI_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	452.252046	902.489538	0.41831	0.00018918	0.50853	0.00022998	0.92683	0.00041916	452.25221502306823	104.51	0.80556	104.38	104.14	104.94	-0.12561	-0.17064	-0.00047848	NaN	63.306	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733480	+		29138	19170	20073	20113							0.0343932665111879
IVAPPFHRR	9	Unmodified	_IVAPPFHRR_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.8028564453125	2	546.824892	1091.63523	-0.94563	-0.00051709	-0.73387	-0.0004013	-1.6795	-0.00091839	547.3273882512741	44.886	0.7211	44.926	44.753	45.474	0.040337					30	20	2	0	0	0	0.024535	1	4352	4352		33.516	6.7195	1	248330	+		29139	28531	20074	20114	33673	33673					0.09307970282179667
IVAPPFHRR	9	Unmodified	_IVAPPFHRR_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.824892	1091.63523	-1.3933	-0.00076188	0.14352	7.8481E-05	-1.2498	-0.0006834	547.3273539933527	45.14	0.62066	44.991	44.593	45.214	-0.1488	0.040725	0.0017322	NaN	42.474	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340790	+		29140	28531	20074	20114							0.09307970282179667
IVAPPFHRR	9	Unmodified	_IVAPPFHRR_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.824892	1091.63523	-1.0455	-0.00057168	-2.3756	-0.0012991	-3.4211	-0.0018707	546.8232221051148	45	0.37377	44.901	44.71	45.084	-0.099449	-0.049204	-0.0010228	NaN	42.474	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156000	+		29141	28531	20074	20114							0.09307970282179667
IVAPPFHRR	9	Unmodified	_IVAPPFHRR_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.824892	1091.63523	-0.44349	-0.00024251	-2.3425	-0.0012809	-2.786	-0.0015235	546.8230930580995	45.216	0.30746	44.963	44.748	45.055	-0.25252	0.013303	-0.00098661	NaN	42.474	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196090	+		29142	28531	20074	20114							0.09307970282179667
IVAPPFHRR	9	Unmodified	_IVAPPFHRR_					0	0	0			REV__nc|ENSG00000198961|O43164-2|PJA2	REV__nc|ENSG00000198961|O43164-2|PJA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.824892	1091.63523	-0.81362	-0.00044491	-3.1708	-0.0017339	-3.9844	-0.0021788	546.8226680382764	45.181	0.34113	44.969	44.715	45.056	-0.21109	0.019362	-0.0018925	NaN	42.474	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129390	+		29143	28531	20074	20114							0.09307970282179667
IVAQIKEN	8	Unmodified	_IVAQIKEN_					0	0	0			REV__ENSG00000025800|ENST00000373625|KPNA6	REV__ENSG00000025800|ENST00000373625|KPNA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.29559326171875	2	457.768917	913.523281	1.1221	0.00051366	-1.0962	-0.00050182	0.025867	1.1841E-05	457.76823287051343	55.52	0.7497	55.52	55.249	55.999	0					43	20	3	0	0	0	0.027866	1	6212	6212		38.806	8.3025	1	896400	+		29144	20025	20075	20115	33674	33674					0.06306071414519465
IVAQIKEN	8	Unmodified	_IVAQIKEN_					0	0	0			REV__ENSG00000025800|ENST00000373625|KPNA6	REV__ENSG00000025800|ENST00000373625|KPNA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.768917	913.523281	-0.68347	-0.00031287	0.80683	0.00036934	0.12336	5.6472E-05	457.7690832116955	55.263	0.48275	55.361	55.116	55.598	0.098015	-0.076851	0.00088481	NaN	30.504	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	707420	+		29145	20025	20075	20115							0.06306071414519465
IVASATTVLT	10	Unmodified	_IVASATTVLT_					0	0	0			REV__ENST00000372310.7_2_1:44462855-44463143:-|nuORF	REV__ENST00000372310.7_2_1:44462855-44463143:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7725830078125	2	488.289682	974.564812	-0.040245	-1.9651E-05	4.4389	0.0021675	4.3986	0.0021478	488.29173947260716	86.342	1.4239	86.155	85.18	86.604	-0.18695					47	32	3	0	0	0	0.03519	1	10378	10378		35.618	8.9254	1	167720	+		29146	31197	20076	20116	33675	33675					0.07651207383162273
IVASGAVHPY	10	Unmodified	_IVASGAVHPY_					0	0	0			REV__NFATC2|p.P296H|1|0.26|ENSG00000101096|chr20:51523354-51523354|G/T|missense_variant	REV__NFATC2|p.P296H|1|0.26|ENSG00000101096|chr20:51523354-51523354|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2723083496094	2	507.274367	1012.53418	-1.1317	-0.00057411	-3.3542	-0.0017015	-4.486	-0.0022756	507.27255864562136	35.88	0.80292	35.88	35.531	36.334	0					50	21	4	0	0	0	0.84306	1	2798	2798		57.811	0	1	2506900	+		29147	37276	20077	20117	33676	33676					0.028414737888056152
IVASTWLKP	9	Unmodified	_IVASTWLKP_					0	0	0			REV__ENST00000311585.11_1_20:57876485-57897473:+|nuORF	REV__ENST00000311585.11_1_20:57876485-57897473:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2740173339844	2	507.80276	1013.59097	-0.23329	-0.00011847	-3.7872	-0.0019231	-4.0205	-0.0020416	507.800679161266	67.373	0.70457	67.373	67.088	67.792	0					39	17	3	0	0	0	0.024427	1	8005	8005		26.693	3.6504	1	1189100	+		29148	30209	20078	20118	33677	33677					0.08471521345336441
IVATLLLVL	9	Unmodified	_IVATLLLVL_					0	0	0		ENSG00000049249|ENST00000377507|TNFRSF9	ENSG00000049249|ENST00000377507|TNFRSF9	ENSG00000049249|ENST00000377507|TNFRSF9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.83367919921875	2	477.833529	953.652505	1.2397	0.00059239	-0.82252	-0.00039303	0.41722	0.00019936	477.83300080283107	105.72	1.0572	105.72	105.41	106.46	0					78	37	4	0	0	0	0.90698	1	13583	13583		31.955	3.7006	1	749940			29149	1127	20079	20119	33678	33678					0.17382453044604063
IVAVPGKMGF	10	Unmodified	_IVAVPGKMGF_					0	0	0			REV__nc|ENSG00000140538|Q16288-2|NTRK3	REV__nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80865478515625	2	509.791338	1017.56812	-1.1737	-0.00059832	-0.78723	-0.00040133	-1.9609	-0.00099965	510.29090396749	29.114	0.52132	28.869	28.621	29.142	-0.24524					22	11	3	0	0	0	0.03519	1	1778	1778		6.7355	5.2707	1	88704	+		29150	24027	20080	20120	33679	33679					0.06004178956220585
IVAVQASIVD	10	Unmodified	_IVAVQASIVD_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.27239990234375	2	507.795132	1013.57571	-1.1766	-0.00059745	2.0931	0.0010628	0.91651	0.0004654	507.7961021633749	35.586	0.45809	35.564	35.426	35.884	-0.021763					28	11	3	0	0	0	0.03519	1	2751	2751		40.778	0	1	282960	+		29151	27966	20081	20121	33680	33680					0.06946609757471833
IVAVVVNALV	10	Unmodified	_IVAVVVNALV_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7714538574219	2	498.826235	995.637917	-0.32541	-0.00016233	2.4285	0.0012114	2.1031	0.0010491	498.82710853199825	31.337	0.38039	31.096	30.915	31.295	-0.24109					11	9	2	0	0	0	0.03519	1	2086	2086		23.042	0	1	81880			29152	18631	20082	20122	33681	33681					0.13992380896479517
IVCARLGKM	9	Unmodified	_IVCARLGKM_					0	0	0			REV__ENST00000202816.5_1_20:13763798-13765490:-|nuORF	REV__ENST00000202816.5_1_20:13763798-13765490:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2812194824219	2	495.78299	989.551427	2.5734	0.0012759	-1.6376	-0.00081191	0.9358	0.00046395	495.78191626391737	18.553	0.4901	18.553	18.333	18.823	0					13	9	2	0	0	0	0.024541	1	279	279		25.45	10.786	1	33885	+		29153	29297	20083	20123	33682	33682					0.05623354798603941
IVCARLGKM	9	Unmodified	_IVCARLGKM_					0	0	0			REV__ENST00000202816.5_1_20:13763798-13765490:-|nuORF	REV__ENST00000202816.5_1_20:13763798-13765490:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.78299	989.551427	3.516	0.0017432	-2.9753	-0.0014751	0.54075	0.00026809	495.7813421274466	18.854	0.44221	18.917	18.698	19.14	0.063307	0.18228	-0.00062897	NaN	25.45	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41012	+		29154	29297	20083	20123							0.05623354798603941
IVCELLAEY	9	Unmodified	_IVCELLAEY_					0	0	0			REV__ENSG00000146918|ENST00000356309|NCAPG2	REV__ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2328491210938	2	526.770268	1051.52598	-0.03234	-1.7036E-05	3.1608	0.001665	3.1284	0.001648	526.7717038963855	50.501	0.60144	50.221	49.839	50.44	-0.27977					22	13	2	0	0	0	0.024386	1	5124	5124		42.474	3.6683	1	807830	+		29155	24521	20084	20124	33683	33683					0.0022815875715878065
IVCELLAEY	9	Unmodified	_IVCELLAEY_					0	0	0			REV__ENSG00000146918|ENST00000356309|NCAPG2	REV__ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2322998046875	2	526.770268	1051.52598	0.35932	0.00018928	2.6099	0.0013748	2.9692	0.0015641	526.771401878397	50.352	0.48952	50.171	49.901	50.39	-0.18071					27	12	3	0	0	0	0.024412	1	5118	5118		50.025	19.521	1	642050	+		29156	24521	20084	20124	33684	33684					0.0022815875715878065
IVCLLASALV	10	Unmodified	_IVCLLASALV_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.3092956542969	2	501.306821	1000.59909	-0.31066	-0.00015574	3.4492	0.0017291	3.1385	0.0015734	501.30848642154956	31.877	0.5976	31.946	31.686	32.284	0.068962					45	14	4	0	0	0	0.72219	1	2118	2118		65.803	1.5959	1	3003000	+		29157	26844	20085	20125	33685	33685					0.09881332270447274
IVCVLPINRRL	11	Unmodified	_IVCVLPINRRL_					0	0	0			REV__ENST00000610085.1_1_7:148394554-148394812:-|nuORF	REV__ENST00000610085.1_1_7:148394554-148394812:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	648.405029296875	2	648.40265	1294.79075	0.93695	0.00060752	3.941	0.0025553	4.8779	0.0031629	648.4052249364388	57.685	0.33659	57.685	57.459	57.796	0					14	8	2	0	0	0	1.0483	1	6497	6497		25.574	2.9944	1	1736200	+		29158	35993	20086	20126	33686	33686					0.15514253021410696
IVDALLKKT	9	Unmodified	_IVDALLKKT_					0	0	0		ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.20782470703125	2	500.823692	999.632832	-0.50689	-0.00025386	0.16899	8.4632E-05	-0.33791	-0.00016923	500.82355109545324	42.267	0.3244	42.035	41.87	42.194	-0.23186					13	8	2	0	0	0	0.024523	1	3759	3759		21.96	0	1	138460			29159	11075	20087	20127	33687	33687					0.13300077033841262
IVDISRKI	8	Unmodified	_IVDISRKI_					0	0	0		ENSG00000171202|ENST00000304511|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.288818359375	2	472.300384	942.586216	0.59645	0.00028171	0.74475	0.00035175	1.3412	0.00063345	472.30020194402	94.104	0.23933	94.104	93.927	94.167	0					7	5	2	0	0	0	0.027866	1	11946	11946		40.573	3.4135	1	352910			29160	8126	20088	20128	33688	33688					0.112626372025602
IVDKLHRPQ	9	Unmodified	_IVDKLHRPQ_					0	0	0			REV__ENST00000562235.5_1_16:67262534-67263013:+|nuORF	REV__ENST00000562235.5_1_16:67262534-67263013:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2249755859375	2	553.327465	1104.64038	-0.49517	-0.00027399	-0.73528	-0.00040685	-1.2304	-0.00068084	553.3271210074329	30.629	0.33283	30.385	30.205	30.538	-0.24415					11	7	2	0	0	0	0.024541	1	1990	1990		19.36	0	1	77653	+		29161	35191	20089	20129	33689	33689					0.09224229354117597
IVDKLSLYFF	10	Unmodified	_IVDKLSLYFF_					0	0	0			REV__ENSG00000161040|ENST00000440067|FBXL13	REV__ENSG00000161040|ENST00000440067|FBXL13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	622.8663940429688	2	622.849907	1243.68526	1.6814	0.0010472	-2.3099	-0.0014387	-0.62852	-0.00039148	622.8482883926717	74.273	0.5083	74.273	74.084	74.593	0					20	11	3	0	0	0	0.03519	1	9115	9115		20.947	8.1352	1	176070	+		29162	25372	20090	20130	33690	33690					0.07316615376794289
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2765808105469	2	490.276575	978.538597	-0.36488	-0.00017889	0.3752	0.00018395	0.010312	5.0558E-06	490.27654277426893	46.209	0.9402	46.26	45.932	46.873	0.051395					65	26	3	0	0	0	0.094442	1	4508	4508		112.41	38.436	1	2541800			29163	2112	20091	20131	33691	33691					0.04846938211721863
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.276575	978.538597	0.11162	5.4724E-05	-0.011007	-5.3963E-06	0.10061	4.9328E-05	490.27627994126	46.274	1.0142	46.274	45.953	46.967	0	0.01293	-0.0004034	NaN	112.41	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1550800			29164	2112	20091	20131							0.04846938211721863
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.276575	978.538597	-1.0742	-0.00052663	1.1432	0.00056051	0.069091	3.3874E-05	490.27686877737756	46.392	1.1851	46.24	45.756	46.941	-0.15157	-0.02076	0.00072841	NaN	112.41	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2064000			29165	2112	20091	20131							0.04846938211721863
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.276575	978.538597	-0.034967	-1.7144E-05	-0.27593	-0.00013528	-0.3109	-0.00015243	490.2761774551542	46.55	0.41516	46.288	46.083	46.498	-0.26118	0.027431	-0.00066317	NaN	112.41	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496090			29166	2112	20091	20131							0.04846938211721863
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.276575	978.538597	-0.40485	-0.00019849	0.24096	0.00011814	-0.16389	-8.0351E-05	490.2763649774449	46.444	0.51073	46.242	45.93	46.441	-0.20226	-0.01897	-0.00015633	NaN	112.41	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789520			29167	2112	20091	20131							0.04846938211721863
IVDPEKTL	8	Unmodified	_IVDPEKTL_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3;REV__PEG3|p.I648Sfs*90|1|0.24|ENSG00000198300|chr19:56816504-56816504|C/-|frameshift_variant	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.29498291015625	2	457.7633	913.512048	-0.25578	-0.00011709	2.2913	0.0010489	2.0355	0.00093178	457.76410196205086	56.275	0.43406	56.119	55.887	56.321	-0.15601					16	11	2	0	0	0	0.027866	1	6232	6232		44.117	0	1	78480	+		29168	28410;37367	20092	20132	33692	33692					0.05183249320384675
IVDPFQILV	9	Unmodified	_IVDPFQILV_					0	0	0		ENST00000470012.1_1_2:73959253-73964442:-|nuORF;ENST00000497464.5_1_2:73957656-73964442:-|nuORF;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB;nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENST00000489476.5_1_2:73956300-73964431:-|nuORF;ENST00000463231.5_1_2:73956300-73964442:-|nuORF	ENST00000470012.1_1_2:73959253-73964442:-|nuORF	ENST00000470012.1_1_2:73959253-73964442:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.3098754882812	2	522.310418	1042.60628	-0.87302	-0.00045599	1.404	0.00073332	0.53098	0.00027733	522.3108128623229	102.27	0.78159	102.27	101.95	102.73	0					46	17	4	0	0	0	0.2508	1	13090	13090		82.241	25.519	1	751540			29169	5714	20093	20133	33693	33693					0.08668388142518779
IVDPNGLARLW	11	Unmodified	_IVDPNGLARLW_					0	0	0		ENSG00000139083|ENST00000396373|ETV6	ENSG00000139083|ENST00000396373|ETV6	ENSG00000139083|ENST00000396373|ETV6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.3529052734375	2	627.35368	1252.69281	0.23047	0.00014459	0.18812	0.00011802	0.4186	0.00026261	627.3538125550418	76.969	0.50294	76.701	76.424	76.927	-0.26806					41	11	4	0	0	0	0.064447	2	9135	9135;9147		117.53	53.318	1	2167000			29170	5296	20094	20134	33694;33695	33694					0.07656767697085343
IVDPNGLARLW	11	Unmodified	_IVDPNGLARLW_					0	0	0		ENSG00000139083|ENST00000396373|ETV6	ENSG00000139083|ENST00000396373|ETV6	ENSG00000139083|ENST00000396373|ETV6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	627.3535766601562	2	627.35368	1252.69281	-0.33552	-0.00021049	0.69141	0.00043376	0.35588	0.00022326	627.3541606757892	76.926	0.54391	76.675	76.399	76.943	-0.25162					41	12	4	0	0	0	0.064447	1	9151	9151		117.53	62.749	1	1915600			29171	5296	20094	20134	33696	33696					0.07656767697085343
IVDPNGLARLW	11	Unmodified	_IVDPNGLARLW_					0	0	0		ENSG00000139083|ENST00000396373|ETV6	ENSG00000139083|ENST00000396373|ETV6	ENSG00000139083|ENST00000396373|ETV6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	627.3533935546875	2	627.35368	1252.69281	-0.3501	-0.00021964	0.48224	0.00030253	0.13214	8.2898E-05	627.3540049827928	76.791	0.67054	76.622	76.309	76.98	-0.16854					48	15	4	0	0	0	0.0098899	1	9118	9118		140.11	81.33	1	1935200			29172	5296	20094	20134	33697	33697					0.07656767697085343
IVDQSQQAY	9	Unmodified	_IVDQSQQAY_					0	0	0		ENST00000392459.3_1_6:127676988-127677414:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF	ENST00000392459.3_1_6:127676988-127677414:+|nuORF	ENST00000392459.3_1_6:127676988-127677414:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.257080078125	2	526.256371	1050.49819	-0.43586	-0.00022938	1.0401	0.00054736	0.60424	0.00031798	526.2568835345115	39.6	0.46421	39.436	39.228	39.692	-0.16458					33	11	4	0	0	0	0.041068	1	3368	3368		132.76	33.383	1	1559000			29173	7341	20095	20135	33698	33698					-0.025040281787141794
IVDQSQQAY	9	Unmodified	_IVDQSQQAY_					0	0	0		ENST00000392459.3_1_6:127676988-127677414:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000440317.1_1_2:127315208-127315727:-|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENSG00000164924|ENST00000395958|YWHAZ;ENST00000517727.5_1_8:101936341-101962760:-|nuORF	ENST00000392459.3_1_6:127676988-127677414:+|nuORF	ENST00000392459.3_1_6:127676988-127677414:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2564697265625	2	526.256371	1050.49819	-0.46541	-0.00024492	1.0203	0.00053694	0.5549	0.00029202	526.2569127218816	39.732	0.47247	39.509	39.302	39.775	-0.22311					28	11	3	0	0	0	0.041068	1	3391	3391		132.76	42.388	1	1210900			29174	7341	20095	20135	33699	33699					-0.025040281787141794
IVDRGSTNL	9	Unmodified	_IVDRGSTNL_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7979736328125	2	487.766906	973.519259	-0.68133	-0.00033233	-4.1495	-0.002024	-4.8308	-0.0023563	487.76515902471846	50.161	0.18989	50.161	50.052	50.242	0					7	5	2	0	0	0	0.024477	1	5239	5239		35.618	2.8059	1	147500			29175	1843	20096	20136	33700	33700					0.03143981920800343
IVDRHQDN	8	Unmodified	_IVDRHQDN_					0	0	0			REV__ENST00000564310.1_2_15:45895313-45908032:+|nuORF	REV__ENST00000564310.1_2_15:45895313-45908032:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.31646728515625	2	498.746505	995.478456	-0.34015	-0.00016965	3.3943	0.0016929	3.0542	0.0015233	498.7481728612816	67.204	0.72288	66.919	66.709	67.432	-0.2857					25	17	2	0	0	0	0.027866	1	8023	8023		40.573	10.069	1	312310	+		29176	35243	20097	20137	33701	33701					-0.01946359398812092
IVDRTTTVV	9	Unmodified	_IVDRTTTVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.29217529296875	2	502.292756	1002.57096	-0.30958	-0.0001555	-0.75779	-0.00038063	-1.0674	-0.00053613	502.2922665015309	38.988	0.69843	38.988	38.761	39.459	0					58	19	4	0	0	0	0.15366	2	3308	3308;3320		98.629	27.334	1	5285600			29177	3499	20098	20138	33702;33703	33702					0.06977725614717656
IVDRTTTVV	9	Unmodified	_IVDRTTTVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.29248046875	2	502.292756	1002.57096	-0.71598	-0.00035963	-0.19361	-9.725E-05	-0.90959	-0.00045688	502.2925567996126	39.042	0.98854	38.943	38.702	39.69	-0.098755					69	27	4	0	0	0	0.2508	1	3303	3303		82.241	15.811	1	4615500			29178	3499	20098	20138	33704	33704					0.06977725614717656
IVDRTTTVV	9	Unmodified	_IVDRTTTVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2928466796875	2	502.292756	1002.57096	-0.81202	-0.00040787	-0.062954	-3.1621E-05	-0.87497	-0.00043949	502.2926760928546	39.196	0.785	39.22	38.956	39.741	0.023727					62	21	4	0	0	0	0.2101	1	3294	3294		87.696	18.91	1	4695500			29179	3499	20098	20138	33705	33705					0.06977725614717656
IVDRTTTVV	9	Unmodified	_IVDRTTTVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.292756	1002.57096	-0.90907	-0.00045662	-0.37715	-0.00018944	-1.2862	-0.00064606	502.29241043868944	39.108	0.9075	38.944	38.396	39.304	-0.16459	-0.085462	-6.8475E-05	NaN	98.629	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742290			29180	3499	20098	20138							0.06977725614717656
IVDRTTTVV	9	Unmodified	_IVDRTTTVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;nc|ENSG00000115902|P43007-2|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.292756	1002.57096	-0.64181	-0.00032238	-0.33018	-0.00016585	-0.97199	-0.00048822	502.29243581983985	39.274	0.72672	39.051	38.616	39.343	-0.22311	0.021595	-2.1294E-05	NaN	98.629	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793980			29181	3499	20098	20138							0.06977725614717656
IVDSLTEMY	9	Unmodified	_IVDSLTEMY_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.758056640625	2	535.757358	1069.50016	-0.17713	-9.4897E-05	0.38818	0.00020797	0.21106	0.00011308	535.7573020486869	72.513	1.0854	72.248	71.595	72.681	-0.26479					44	25	3	0	0	0	0.14199	1	8510	8510		101.21	15.852	1	668370			29182	4051	20099	20139	33706	33706					-0.03180735485102559
IVDSLTEMY	9	Unmodified	_IVDSLTEMY_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.757358	1069.50016	-0.28495	-0.00015266	0.51582	0.00027636	0.23088	0.00012369	535.7573805265555	72.527	0.67839	72.25	71.947	72.626	-0.2769	0.019023	-0.00012577	NaN	101.21	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480580			29183	4051	20099	20139							-0.03180735485102559
IVDSLTEMY	9	Unmodified	_IVDSLTEMY_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;USP9X|p.L1559*|1|0.89|ENSG00000124486|chrX:41201127-41201127|G/-|frameshift_variant	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.757358	1069.50016	-0.99463	-0.00053288	1.0062	0.00053906	0.011534	6.1795E-06	535.7576916759056	72.393	0.75058	72.195	71.788	72.539	-0.19811	-0.035921	0.00039964	NaN	101.21	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757010			29184	4051	20099	20139							-0.03180735485102559
IVDVYENLY	9	Unmodified	_IVDVYENLY_					0	0	0		ENSG00000162889|ENST00000367103|MAPKAPK2;nc|ENSG00000162889|P49137-2|MAPKAPK2	ENSG00000162889|ENST00000367103|MAPKAPK2	ENSG00000162889|ENST00000367103|MAPKAPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.287109375	2	564.284597	1126.55464	-0.62026	-0.00035001	0.081747	4.6129E-05	-0.53852	-0.00030388	564.2847023777113	67.093	1.3156	67.117	66.769	68.085	0.023911					65	32	5	0	0	0	0.31037	1	7921	7921		74.255	1.6351	1	3897400			29185	7007	20100	20140	33707	33707					-0.0035740034202262905
IVECGPCQKV	10	Unmodified	_IVECGPCQKV_					0	0	0		nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-6|CACNA2D4;ENSG00000151062|ENST00000382722|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-5|CACNA2D4;ENST00000536818.2_1_12:1904579-1906675:-|nuORF;ENST00000541444.5_1_12:1902823-1906819:-|nuORF;ENST00000280663.12_1_12:1902823-1909126:-|nuORF	nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4	nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3292236328125	2	538.26737	1074.52019	-0.18294	-9.8469E-05	-2.2948	-0.0012352	-2.4777	-0.0013337	538.2657281893499	82.427	1.161	82.247	81.604	82.765	-0.18079					41	26	3	0	0	0	0.03519	1	9846	9846		19.997	11.765	1	126070			29186	6173	20101	20141	33708	33708					-0.014092630261757222
IVEDETIII	9	Unmodified	_IVEDETIII_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7965087890625	2	522.794798	1043.57504	-0.39154	-0.0002047	4.2922	0.0022439	3.9007	0.0020393	522.7969513620492	39.075	2.5388	38.851	37.759	40.298	-0.22311					131	68	2	0	0	0	0.40179	1	3306	3306		65.803	7.9919	1	2528800	+		29187	36457	20102	20142	33709	33709					0.05499770317783259
IVEDFLTDW	9	Unmodified	_IVEDFLTDW_					0	0	0		ENSG00000100350|ENST00000397224|FOXRED2;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENSG00000100350|ENST00000397224|FOXRED2	ENSG00000100350|ENST00000397224|FOXRED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2805786132812	2	569.276772	1136.53899	0.59111	0.0003365	-0.54373	-0.00030953	0.047378	2.6971E-05	569.2763162511985	79.856	1.0427	79.609	79.195	80.238	-0.2465					69	24	4	0	0	0	0.67308	1	9574	9574		47.916	0.25827	1	1575800			29188	2188	20103	20143	33710	33710					-0.023816868590984086
IVEDMLKKV	9	Oxidation (M)	_IVEDM(Oxidation (M))LKKV_		IVEDM(1)LKKV		IVEDM(91)LKKV	0	0	1			REV__ENSG00000120699|ENST00000389704|EXOSC8	REV__ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.8110961914062	2	545.812467	1089.61038	-1.5334	-0.00083692	-0.24482	-0.00013362	-1.7782	-0.00097055	545.8126020667369	91.474	1.5267	91.474	91.011	92.537	0					93	36	4	0	0	0	0.18915	2	11594	11582;11594		90.777	13.459	1	3855000	+		29189	22551	20104	20144	33711;33712	33712		666			0.06916109573921858
IVEEGVDIPK	10	Unmodified	_IVEEGVDIPK_					0	0	0		DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant;nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	DICER1|p.F1452Lfs*2|1|0.15|ENSG00000100697|chr14:95096564-95096564|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2952270507812	2	549.805697	1097.59684	-0.11997	-6.5959E-05	3.1077	0.0017086	2.9877	0.0016427	549.8071779678005	95.648	0.63802	95.651	95.347	95.985	0.0033722					19	14	2	0	0	0	0.03519	1	12175	12175		27.882	0	1	79325			29190	640	20105	20145	33713	33713					0.051945750663207946
IVENYSKMD	9	Unmodified	_IVENYSKMD_					0	0	0		SYDE2|p.G1123V|1|0.09|ENSG00000097096|chr1:85158967-85158967|C/A|missense_variant	SYDE2|p.G1123V|1|0.09|ENSG00000097096|chr1:85158967-85158967|C/A|missense_variant	SYDE2|p.G1123V|1|0.09|ENSG00000097096|chr1:85158967-85158967|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7940063476562	2	549.760432	1097.50631	-0.50851	-0.00027956	-1.7984	-0.00098867	-2.3069	-0.0012682	549.7590447573407	67.441	0.38389	67.202	67.038	67.422	-0.23814					12	8	2	0	0	0	0.024523	1	7782	7782		15.642	0	1	215880			29191	38047	20106	20146	33714	33714					-0.03854217253569914
IVEQPQAAK	9	Unmodified	_IVEQPQAAK_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.27935791015625	2	492.279649	982.544745	0.31503	0.00015508	0.13187	6.4918E-05	0.44691	0.00022	492.279545821303	40.996	0.77517	40.996	40.551	41.326	0					43	21	3	0	0	0	0.35646	1	3652	3652		68.787	6.6794	1	2833700	+		29192	35717	20107	20147	33715	33715					0.052774564432297666
IVEQPQAAK	9	Unmodified	_IVEQPQAAK_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.27947998046875	2	492.279649	982.544745	0.37048	0.00018238	0.16845	8.2927E-05	0.53894	0.00026531	492.27952201868777	41.156	0.77724	41.033	40.584	41.361	-0.12317					48	21	4	0	0	0	0.29158	1	3671	3671		76.774	11.309	1	2709600	+		29193	35717	20107	20147	33716	33716					0.052774564432297666
IVEQPQAAK	9	Unmodified	_IVEQPQAAK_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	492.279649	982.544745	0.31503	0.00015508	0.13187	6.4918E-05	0.44691	0.00022	492.279545821303	40.996	0.77517	40.996	40.551	41.326	0	-0.07086	-0.00030064	NaN	76.774	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2833700	+		29194	35717	20107	20147							0.052774564432297666
IVEQPQAAK	9	Unmodified	_IVEQPQAAK_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	492.279649	982.544745	-0.19926	-9.8093E-05	0.64539	0.00031771	0.44613	0.00021962	492.27977400556153	41.142	0.70009	41.165	40.764	41.464	0.023006	0.098013	0.00020495	NaN	76.774	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2751600	+		29195	35717	20107	20147							0.052774564432297666
IVEQPQAAK	9	Unmodified	_IVEQPQAAK_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.279649	982.544745	-0.73935	-0.00036397	0.6035	0.00029709	-0.13585	-6.6876E-05	492.27982501288886	41.139	0.99269	41.003	40.712	41.705	-0.13553	-0.064154	0.0001637	NaN	76.774	54	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1632600	+		29196	35717	20107	20147							0.052774564432297666
IVEQPQAAK	9	Unmodified	_IVEQPQAAK_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.279649	982.544745	-0.49779	-0.00024505	0.41212	0.00020288	-0.085667	-4.2172E-05	492.2797089588247	41.369	1.0177	41.139	40.848	41.865	-0.23029	0.071741	-2.4722E-05	NaN	76.774	53	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1690300	+		29197	35717	20107	20147							0.052774564432297666
IVESVQIPGG	10	Unmodified	_IVESVQIPGG_					0	0	0		ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80322265625	2	499.779482	997.544411	-0.01357	-6.7822E-06	0.95596	0.00047777	0.94238	0.00047098	499.7799700593138	53.298	0.60714	53.298	53.011	53.618	0					24	16	2	0	0	0	0.03519	1	5720	5720		22.58	0	1	430200			29198	15107	20108	20148	33717	33717					0.04554036723379795
IVETWAAPLH	10	Unmodified	_IVETWAAPLH_					0	0	0			REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.31298828125	2	568.808574	1135.60259	0.48274	0.00027459	-0.26787	-0.00015237	0.21487	0.00012222	568.8081824126106	77.053	1.6899	76.785	76.467	78.157	-0.26806					101	40	5	0	0	0	0.75995	1	9209	9209		63.306	3.3755	1	18838000	+		29199	27900	20109	20149	33718	33718					0.04021718368653637
IVEVLPNQP	9	Unmodified	_IVEVLPNQP_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.25469970703125	2	504.78985	1007.56515	-1.0421	-0.00052606	-1.0537	-0.00053191	-2.0959	-0.001058	504.7893298445783	39.016	0.72367	38.851	38.357	39.081	-0.16459					24	19	2	0	0	0	0.024405	1	3234	3234		44.117	0	1	157360			29200	2338	20110	20150	33719	33719					0.06166627103027622
IVFGSFLL	8	Unmodified	_IVFGSFLL_					0	0	0		ENST00000557422.1_1_14:60070629-60097278:-|nuORF;ENST00000474911.5_1_14:60063465-60074250:-|nuORF;nc|ENSG00000139970|Q16799-3|RTN1;nc|ENSG00000139970|Q16799-2|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF;ENSG00000139970|ENST00000267484|RTN1	ENST00000557422.1_1_14:60070629-60097278:-|nuORF	ENST00000557422.1_1_14:60070629-60097278:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.25390625	2	448.268022	894.521491	-1.1495	-0.00051529	0.75197	0.00033709	-0.39754	-0.0001782	448.26832204543723	49.079	0.25446	49.154	48.95	49.204	0.074192					12	6	3	0	0	0	0.027866	1	4986	4986		9.4706	0.64823	1	92152			29201	5379	20111	20151	33720	33720					0.07001062396557245
IVFIHLNKY	9	Unmodified	_IVFIHLNKY_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.3069458007812	2	573.837134	1145.65972	0.53949	0.00030958	-3.6024	-0.0020672	-3.0629	-0.0017576	573.8349273495662	58.756	0.36076	58.514	58.3	58.661	-0.24165					11	8	2	0	0	0	0.024523	1	6469	6469		37.159	7.3176	1	174000	+		29202	27801	20112	20152	33721	33721					0.09271185645047808
IVFIHLNKY	9	Unmodified	_IVFIHLNKY_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	573.837134	1145.65972	-0.13955	-8.0079E-05	-3.5831	-0.0020561	-3.7226	-0.0021362	573.8352029587306	58.754	0.31212	58.566	58.39	58.702	-0.18795	0.077146	-1.8997E-05	NaN	45.952	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114960	+		29203	27801	20112	20152							0.09271185645047808
IVFKTPKYK	9	Unmodified	_IVFKTPKYK_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2687377929688	2	562.347335	1122.68012	0.24574	0.00013819	-3.7851	-0.0021285	-3.5393	-0.0019903	562.3453670675034	79.865	0.33318	79.646	79.41	79.744	-0.21923					12	7	3	0	0	0	0.024457	1	9555	9555		37.159	8.0096	1	74829			29204	2971	20113	20153	33722	33722					0.12368356304841654
IVFKVDEVD	9	Unmodified	_IVFKVDEVD_					0	0	0			REV__nc|ENSG00000100201|Q92841-1|DDX17	REV__nc|ENSG00000100201|Q92841-1|DDX17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8167724609375	2	532.28714	1062.55973	0.21367	0.00011373	0.24826	0.00013214	0.46192	0.00024588	532.2870270572273	85.207	0.53464	85.012	84.767	85.301	-0.19508					23	12	3	0	0	0	0.024427	1	10346	10346		19.997	11.303	1	159150	+		29205	21063	20114	20154	33723	33723					0.030949035205594555
IVFRRGLP	8	Unmodified	_IVFRRGLP_					0	0	0		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO;nc|ENSG00000108439|Q9NVS9-4|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.76416015625	2	479.303262	956.59197	-0.30088	-0.00014421	0.56529	0.00027094	0.26441	0.00012673	479.3027262480447	73.47	0.53189	73.48	73.145	73.677	0.0096512					22	13	3	0	0	0	0.027866	1	8843	8843		21.702	0	1	590900			29206	2899	20115	20155	33724	33724					0.11193780504891038
IVFVASCLSPV	11	Unmodified	_IVFVASCLSPV_					0	0	0			REV__ENSG00000121797|ENST00000399036|CCRL2	REV__ENSG00000121797|ENST00000399036|CCRL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.7844848632812	2	567.81501	1133.61547	-0.44303	-0.00025156	-1.7393	-0.00098759	-2.1823	-0.0012392	568.3155016575157	94.076	0.81049	94.076	93.75	94.561	-0.00022888					52	19	4	0	0	0	0.024759	1	11998	11998		34.173	16.808	1	375360	+		29207	22610	20116	20156	33725	33725					0.054004134365186474
IVFVASCLSPV	11	Unmodified	_IVFVASCLSPV_					0	0	0			REV__ENSG00000121797|ENST00000399036|CCRL2	REV__ENSG00000121797|ENST00000399036|CCRL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.81501	1133.61547	-0.5622	-0.00031923	-1.8525	-0.0010519	-2.4147	-0.0013711	568.3156494890037	94.166	0.68172	94.166	93.848	94.53	0	0.024048	-0.0003132	NaN	19.104	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497910	+		29208	22610	20116	20156							0.054004134365186474
IVGCNWLEL	9	Unmodified	_IVGCNWLEL_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3114013671875	2	523.770603	1045.52665	-0.22274	-0.00011667	-0.38106	-0.00019959	-0.6038	-0.00031625	524.2724181326197	75.344	0.21019	75.072	74.934	75.144	-0.27267					7	4	2	0	0	0	0.023817	1	8889	8889		82.305	21.901	1	35562			29209	1254	20117	20157	33726	33726					0.005709981968720967
IVGKRGVK	8	Unmodified	_IVGKRGVK_					0	0	0			REV__HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;REV__ENST00000388967.3_1_3:36809324-36810203:-|nuORF	REV__HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.73736572265625	2	428.789987	855.565421	0.016198	6.9455E-06	0.22284	9.5553E-05	0.23904	0.0001025	428.7899152292719	23.494	0.45062	23.314	23.112	23.563	-0.17989					23	10	3	0	0	0	0.027866	1	925	925		1.2052	0	1	327500	+		29210	24330;31564	20118	20158	33727	33727					0.13186091613567896
IVGLTGLTACD	11	Unmodified	_IVGLTGLTACD_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-2|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7863159179688	2	531.778625	1061.5427	-0.20696	-0.00011006	-1.2603	-0.0006702	-1.4673	-0.00078026	531.7777913415174	57.081	0.53782	56.879	56.672	57.21	-0.20209					20	14	2	0	0	0	0.024752	1	6195	6195		32.812	0	1	2417300	+		29211	20884	20119	20159	33728	33728					0.014386596430995269
IVGLTGLTACD	11	Unmodified	_IVGLTGLTACD_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-2|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.778625	1061.5427	-0.69207	-0.00036803	-8.5694	-0.004557	-9.2614	-0.004925	531.7742574482342	56.916	0.10456	56.752	56.675	56.78	-0.16431	-0.11842	-0.0074382	NaN	32.812	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42830	+		29212	20884	20119	20159							0.014386596430995269
IVGPKSLQCGV	11	Carbamidomethyl (C)	_IVGPKSLQC(Carbamidomethyl (C))GV_	IVGPKSLQC(1)GV		IVGPKSLQC(72)GV		0	1	0			REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	579.81982421875	2	579.320991	1156.62743	-2.0147	-0.0011671	-1.353	-0.00078379	-3.3676	-0.0019509	579.821609347542	62.446	0.55698	62.446	62.297	62.854	0					23	15	2	0	0	0	0.56861	1	7269	7269		71.877	10.906	1	801600	+		29213	27978	20120	20160	33729	33729	364				0.055380301797185894
IVGPKSLQCGV	11	Carbamidomethyl (C)	_IVGPKSLQC(Carbamidomethyl (C))GV_					0	1	0			REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	579.320991	1156.62743	-2.0147	-0.0011671	-1.353	-0.00078379	-3.3676	-0.0019509	579.821609347542	62.446	0.55698	62.446	62.297	62.854	0	-0.001539	0.00052537	NaN	71.877	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	801600	+		29214	27978	20120	20160			364				0.055380301797185894
IVGPKSLQCGV	11	Carbamidomethyl (C)	_IVGPKSLQC(Carbamidomethyl (C))GV_					0	1	0			REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	579.320991	1156.62743	-1.6449	-0.0009529	-1.5576	-0.00090235	-3.2025	-0.0018553	579.3198626888728	62.67	0.49565	62.43	62.325	62.821	-0.23926	-0.017317	0.00028825	NaN	71.877	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674770	+		29215	27978	20120	20160			364				0.055380301797185894
IVGPKSLQCGV	11	Carbamidomethyl (C)	_IVGPKSLQC(Carbamidomethyl (C))GV_					0	1	0			REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	579.320991	1156.62743	-0.77748	-0.00045041	-2.7189	-0.0015751	-3.4964	-0.0020255	579.3194329529884	62.404	0.53762	62.467	62.272	62.81	0.062767	0.018856	-0.0010573	NaN	71.877	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1246100	+		29216	27978	20120	20160			364				0.055380301797185894
IVGRFKGSL	9	Unmodified	_IVGRFKGSL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2588806152344	2	488.800552	975.58655	-0.2863	-0.00013995	-0.91691	-0.00044819	-1.2032	-0.00058813	488.7998303283685	41.354	0.55887	41.377	41.111	41.67	0.023006					21	15	2	0	0	0	0.024323	1	3707	3707		35.618	0	1	228480			29217	3413	20121	20161	33730	33730					0.09778056922436917
IVGTLYLYR	9	Unmodified	_IVGTLYLYR_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1;nc|ENSG00000198964|Q86VZ5-2|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3425903320312	2	549.321317	1096.62808	-0.94541	-0.00051933	-4.2628	-0.0023416	-5.2082	-0.002861	549.3205922358966	50.142	0.12526	50.142	50.052	50.178	0					5	3	2	0	0	0	0.024436	1	5211	5211		30.504	5.0535	1	87191			29218	10268	20122	20162	33731	33731					0.08363192891079052
IVGTYNVVV	9	Unmodified	_IVGTYNVVV_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7841796875	2	482.279118	962.543683	0.61961	0.00029883	-0.044022	-2.1231E-05	0.57559	0.0002776	482.2789227967859	72.165	0.67403	72.165	71.94	72.614	0					24	16	2	0	0	0	0.024405	1	8832	8832		53.351	10.955	1	291690			29219	5784	20123	20163	33732	33732					0.06091242074330694
IVGTYNVVV	9	Unmodified	_IVGTYNVVV_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	482.279118	962.543683	0.47435	0.00022877	-0.34525	-0.00016651	0.1291	6.226E-05	482.27885044099156	72.244	0.54128	72.254	71.988	72.529	0.0097733	0.034763	-2.1519E-05	NaN	53.351	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373000			29220	5784	20123	20163							0.06091242074330694
IVGTYNVVV	9	Unmodified	_IVGTYNVVV_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	482.279118	962.543683	0.30646	0.0001478	0.52198	0.00025174	0.82844	0.00039954	482.27967575323714	72.538	0.6351	72.261	71.947	72.582	-0.2769	0.042475	0.00081498	NaN	53.351	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65119			29221	5784	20123	20163							0.06091242074330694
IVGTYNVVV	9	Unmodified	_IVGTYNVVV_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	482.279118	962.543683	0.17567	8.4721E-05	-0.48078	-0.00023187	-0.30511	-0.00014715	482.27868248570894	72.456	0.3432	72.191	72.042	72.385	-0.26479	-0.027622	-0.00015224	NaN	53.351	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73760			29222	5784	20123	20163							0.06091242074330694
IVGTYNVVV	9	Unmodified	_IVGTYNVVV_					0	0	0		nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	nc|ENSG00000144935|P48995-2|TRPC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	482.279118	962.543683	-0.22652	-0.00010925	-0.30654	-0.00014784	-0.53306	-0.00025708	482.2782911423407	72.408	0.38052	72.21	71.949	72.33	-0.19811	-0.0089385	1.5828E-05	NaN	53.351	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67218			29223	5784	20123	20163							0.06091242074330694
IVHCVFQL	8	Unmodified	_IVHCVFQL_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.Q1010R|1|0.3|ENSG00000144554|chr3:10081152-10081152|A/G|missense_variant	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7875061035156	2	479.762581	957.510608	-0.93258	-0.00044742	-1.9371	-0.00092937	-2.8697	-0.0013768	479.7618185875348	22.556	0.75987	22.63	22.078	22.837	0.073954					21	15	2	0	0	0	0.027866	1	725	725		23.037	7.4005	1	35256			29224	5747	20124	20164	33733	33733					0.03015336750638653
IVHLVPRR	8	Unmodified	_IVHLVPRR_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2971496582031	2	495.321986	988.629418	0.0028746	1.4238E-06	-4.1687	-0.0020648	-4.1658	-0.0020634	495.31975529258096	54.645	0.14289	54.414	54.351	54.494	-0.23087					5	3	2	0	0	0	0.027866	1	5817	5817		14.664	0	1	107600			29225	9628	20125	20165	33734	33734					0.13464871770509035
IVHSQIPMSL	10	Oxidation (M)	_IVHSQIPM(Oxidation (M))SL_		IVHSQIPM(1)SL		IVHSQIPM(72)SL	0	0	1			REV__ENSG00000170653|ENST00000420353|ATF7	REV__ENSG00000170653|ENST00000420353|ATF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.806884765625	2	570.807716	1139.60088	0.63894	0.00036471	-2.5725	-0.0014684	-1.9336	-0.0011037	570.806017089208	73.979	0.89381	73.979	73.741	74.635	0					63	20	4	0	0	0	0.64538	1	9047	9047		71.877	13.096	1	3335700	+		29226	26492	20126	20166	33735	33735		783			0.03666341288385411
IVHWVWPLV	9	Unmodified	_IVHWVWPLV_					0	0	0		ENST00000490408.5_1_9:116034780-116035611:-|nuORF	ENST00000490408.5_1_9:116034780-116035611:-|nuORF	ENST00000490408.5_1_9:116034780-116035611:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.8365478515625	2	574.834394	1147.65424	-1.1507	-0.00066148	2.5095	0.0014425	1.3587	0.00078104	574.8357398577799	105.99	0.48483	105.86	105.56	106.04	-0.1328					42	20	3	0	0	0	0.99355	1	13212	13212		21.702	2.3424	1	202310			29227	15430	20127	20167	33736	33736					0.08631506853203064
IVIFPWID	8	Unmodified	_IVIFPWID_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7918701171875	2	501.786579	1001.5586	0.19738	9.9042E-05	-4.2861	-0.0021507	-4.0888	-0.0020517	501.78427039848697	52.515	0.78722	52.607	52.404	53.191	0.091942					28	20	2	0	0	0	0.027866	1	5548	5548		13.775	0	1	811860	+		29228	28144	20129	20168	33737	33737					0.057887339423245976
IVIFTGTRGV	10	Unmodified	_IVIFTGTRGV_					0	0	0			REV__ENST00000463727.1_1_10:129867962-129868115:+|nuORF	REV__ENST00000463727.1_1_10:129867962-129868115:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8170166015625	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	1.1286	1	10900	10900		25.574	0.12388	1	3781500	+		29229	23267	20130	20169	33738	33738					0.09498308748334239
IVIIPPDDRL	10	Unmodified	_IVIIPPDDRL_					0	0	0			REV__ENSG00000115155|ENST00000272371|OTOF	REV__ENSG00000115155|ENST00000272371|OTOF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.1329	1	11361	11361		27.882	1.1893	1	5880000	+		29230	22169	20131	20170	33739	33739					0.10690847091268552
IVIIQIFFILY	11	Unmodified	_IVIIQIFFILY_					0	0	0			REV__ENST00000282030.5_1_18:42644666-42644876:+|nuORF	REV__ENST00000282030.5_1_18:42644666-42644876:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.2555847167969	3	461.287975	1380.8421	-0.26244	-0.00012106	1.1641	0.00053699	0.90167	0.00041593	461.28839308959317	46.477	0.49575	46.216	45.891	46.387	-0.26118					18	12	2	0	0	0	0.024839	1	4446	4446		6.6596	0	1	186040	+		29231	29890	20132	20171	33740	33740					0.1669090026714457
IVIKPGLQKN	10	Unmodified	_IVIKPGLQKN_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.353759765625	2	555.355691	1108.69683	-0.21036	-0.00011683	-3.5972	-0.0019977	-3.8076	-0.0021146	555.353605243723	99.586	0.64217	99.596	99.268	99.91	0.010231					45	14	4	0	0	0	1.1329	1	12720	12720		27.882	5.9224	1	1220000	+		29232	23122	20133	20172	33741	33741					0.14682857190791765
IVIKPGLQKN	10	Unmodified	_IVIKPGLQKN_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.3532104492188	2	555.355691	1108.69683	0.52818	0.00029333	-4.3682	-0.0024259	-3.84	-0.0021326	555.3531407219169	99.771	0.71594	99.636	99.184	99.9	-0.13526					46	17	4	0	0	0	1.1267	1	12357	12357		29.15	6.1071	1	852080	+		29233	23122	20133	20172	33742	33742					0.14682857190791765
IVIKPGLQKN	10	Unmodified	_IVIKPGLQKN_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.35302734375	2	555.355691	1108.69683	-0.12046	-6.6898E-05	-3.7617	-0.0020891	-3.8821	-0.002156	555.3534816537995	99.884	0.65701	99.713	99.316	99.974	-0.17088					48	18	4	0	0	0	1.1267	1	12375	12375		29.15	1.2673	1	851930	+		29234	23122	20133	20172	33743	33743					0.14682857190791765
IVIMLLVL	8	Unmodified	_IVIMLLVL_					0	0	0			REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.3127746582031	2	457.311375	912.608197	2.239	0.0010239	2.0963	0.00095867	4.3353	0.0019826	457.31222556849895	19.041	0.39492	18.807	18.632	19.027	-0.23345					17	7	3	0	0	0	0.8525	1	349	349		54.895	0	1	138170	+		29235	37366	20134	20173	33744	33744					0.1483972562677991
IVIMLLVL	8	Unmodified	_IVIMLLVL_					0	0	0			REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.311375	912.608197	0.61696	0.00028214	3.719	0.0017007	4.336	0.0019829	457.31290874167235	19.021	0.49519	18.86	18.688	19.183	-0.16079	0.011073	0.00071768	NaN	54.895	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153590	+		29236	37366	20134	20173							0.1483972562677991
IVIMLLVL	8	Unmodified	_IVIMLLVL_					0	0	0			REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.311375	912.608197	0.50231	0.00022971	3.8705	0.00177	4.3728	0.0019997	457.3130192268937	19.083	0.39477	18.88	18.708	19.102	-0.20371	0.030575	0.00085619	NaN	54.895	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135490	+		29237	37366	20134	20173							0.1483972562677991
IVIMLLVL	8	Unmodified	_IVIMLLVL_					0	0	0			REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	REV__PDGFRA|p.V536M|1|0.28|ENSG00000134853|chr4:54274578-54274578|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	457.311375	912.608197	2.239	0.0010239	2.0963	0.00095867	4.3353	0.0019826	457.31222556849895	19.041	0.39492	18.807	18.632	19.027	-0.23345	-0.041648	-0.00076648	NaN	54.895	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138170	+		29238	37366	20134	20173							0.1483972562677991
IVIQENMPV	9	Unmodified	_IVIQENMPV_					0	0	0			REV__ENSG00000114455|ENST00000467761|HHLA2	REV__ENSG00000114455|ENST00000467761|HHLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7838745117188	2	521.78371	1041.55287	-0.6279	-0.00032763	1.2078	0.00063022	0.57992	0.0003026	521.7841437229965	69.978	0.54789	69.711	69.451	69.999	-0.26725					37	12	4	0	0	0	0.40179	1	8117	8117		65.803	3.6958	1	1764400	+		29239	22124	20135	20174	33745	33745					0.03375267368346613
IVKAIFDR	8	Unmodified	_IVKAIFDR_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.732666015625	2	481.295102	960.575651	0.015836	7.6219E-06	-0.0047238	-2.2736E-06	0.011112	5.3483E-06	481.29496535489875	56.906	0.88482	56.906	56.46	57.345	0					60	24	4	0	0	0	0.027866	1	6445	6445		40.573	12.318	1	2413400	+		29240	25558	20136	20175	33746	33746					0.09378654548117993
IVKDLDWKW	9	Unmodified	_IVKDLDWKW_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.5574951171875	3	401.557125	1201.64954	0.56452	0.00022669	-0.2588	-0.00010392	0.30573	0.00012277	401.55696280133935	61.777	0.9133	61.563	61.293	62.206	-0.21375					75	22	5	0	0	0	0.23158	3	6930	6909;6917;6930		84.817	31.22	1	3547000			29241	5683	20138	20176	33747;33748;33749	33749					0.056785779197980446
IVKDLDWKW	9	Unmodified	_IVKDLDWKW_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.5574035644531	3	401.557125	1201.64954	0.23438	9.4116E-05	-0.037585	-1.5093E-05	0.19679	7.9023E-05	401.5570419952358	61.595	1.1832	61.417	61.12	62.304	-0.17781					92	29	5	0	0	0	0.20016	3	6904	6892;6904;6919		89.029	29.098	1	3222700			29242	5683	20138	20176	33750;33751;33752	33751					0.056785779197980446
IVKDLDWKW	9	Unmodified	_IVKDLDWKW_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.55706787109375	3	401.557125	1201.64954	-0.4611	-0.00018516	0.65048	0.0002612	0.18938	7.6046E-05	401.5572942283617	61.825	0.95473	61.568	61.258	62.213	-0.25725					68	23	5	0	0	0	0.15193	3	6917	6905;6917;6932		99.013	40.783	1	3196200			29243	5683	20138	20176	33753;33754;33755	33754					0.056785779197980446
IVKEKSRL	8	Unmodified	_IVKEKSRL_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.8135681152344	2	486.813659	971.612765	0.21446	0.0001044	-0.87224	-0.00042462	-0.65778	-0.00032022	486.81321491012056	21.41	1.0528	21.233	20.918	21.971	-0.17721					64	21	5	0	0	0	0.845	1	695	695		55.504	0	1	3666200	+		29244	21244	20139	20177	33756	33756					0.12582326093888696
IVKEKSRL	8	Unmodified	_IVKEKSRL_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.8141174316406	2	486.813659	971.612765	-0.0018056	-8.7897E-07	-0.6097	-0.00029681	-0.61151	-0.00029769	486.8133579342013	21.59	1.0108	21.4	21.078	22.089	-0.19072					64	20	5	0	0	0	0.71063	1	665	665		66.429	2.222	1	2962300	+		29245	21244	20139	20177	33757	33757					0.12582326093888696
IVKEVHKN	8	Unmodified	_IVKEVHKN_					0	0	0			REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.7898864746094	2	483.790184	965.565815	0.12753	6.1697E-05	-0.62637	-0.00030303	-0.49884	-0.00024133	483.7898822683617	36.627	1.5424	36.422	35.953	37.496	-0.20518					84	39	3	0	0	0	0.845	2	2878	2878;2916		55.504	2.5675	1	9434800	+		29246	34788	20140	20178	33758;33759	33758					0.08165466542754984
IVKEVHKN	8	Unmodified	_IVKEVHKN_					0	0	0			REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.7900085449219	2	483.790184	965.565815	-0.12779	-6.1822E-05	-0.22514	-0.00010892	-0.35293	-0.00017075	483.79006972796594	36.645	1.3437	36.429	36.088	37.432	-0.21661					71	33	3	0	0	0	0.59392	2	2889	2889;2901		76.847	10.417	1	9174100	+		29247	34788	20140	20178	33760;33761	33760					0.08165466542754984
IVKEVHKN	8	Unmodified	_IVKEVHKN_					0	0	0			REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	483.79058837890625	2	483.790184	965.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.603	1	36.405	35.905	36.905	-0.19829								0	0	0	0.40904	1	2865	2865		65.803	2.4969	1		+		29248	34788	20140	20178	33762	33762					0.08165466542754984
IVKEVHKN	8	Unmodified	_IVKEVHKN_					0	0	0			REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	REV__ENST00000542248.5_1_12:127245549-127248026:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	483.7898254394531	2	483.790184	965.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.688	1	36.479	35.979	36.979	-0.2092								0	0	0	0.32412	1	2878	2878		76.847	15.875	1		+		29249	34788	20140	20178	33763	33763					0.08165466542754984
IVKGLLSH	8	Unmodified	_IVKGLLSH_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.77685546875	2	433.776545	865.538538	0.092	3.9907E-05	0.19869	8.6185E-05	0.29069	0.00012609	433.7764515288985	31.711	1.0851	31.526	31.172	32.257	-0.18503					57	25	4	0	0	0	0.845	1	2143	2143		55.504	2.1528	1	913020	+		29250	23460	20141	20179	33764	33764					0.10038983002368695
IVKGLLSH	8	Unmodified	_IVKGLLSH_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.7762145996094	2	433.776545	865.538538	-0.026843	-1.1644E-05	0.10339	4.4847E-05	0.076544	3.3203E-05	433.77642401523036	31.743	1.0964	31.586	31.227	32.324	-0.15741					54	26	3	0	0	0	0.71833	1	2123	2123		65.803	2.4969	1	1245100	+		29251	23460	20141	20179	33765	33765					0.10038983002368695
IVKGLLSH	8	Unmodified	_IVKGLLSH_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	433.776545	865.538538	0.12103	5.2502E-05	0.16148	7.0046E-05	0.28251	0.00012255	433.7764193691134	31.79	0.78009	31.553	31.262	32.042	-0.23666	-0.0017616	8.3227E-06	NaN	65.803	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722600	+		29252	23460	20141	20179							0.10038983002368695
IVKGLLSH	8	Unmodified	_IVKGLLSH_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	433.776545	865.538538	0.092	3.9907E-05	0.19869	8.6185E-05	0.29069	0.00012609	433.7764515288985	31.711	1.0851	31.526	31.172	32.257	-0.18503	-0.028994	4.0601E-05	NaN	65.803	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	913020	+		29253	23460	20141	20179							0.10038983002368695
IVKGLLSH	8	Unmodified	_IVKGLLSH_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	433.776545	865.538538	-0.026843	-1.1644E-05	0.10339	4.4847E-05	0.076544	3.3203E-05	433.77642401523036	31.743	1.0964	31.586	31.227	32.324	-0.15741	0.030756	-4.2076E-05	NaN	65.803	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1245100	+		29254	23460	20141	20179							0.10038983002368695
IVKGPMPAG	9	Unmodified	_IVKGPMPAG_					0	0	0			REV__ENSG00000173599|ENST00000393960|PC	REV__ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.251708984375	2	435.249306	868.484059	0.69119	0.00030084	3.6493	0.0015884	4.3405	0.0018892	435.2507821673248	92.023	3.6376	92.033	91.072	94.709	0.0094147					138	87	3	0	0	0	0.88411	1	11586	11586		33.516	1.5607	1	1840600	+		29255	26789	20142	20180	33766	33766					0.04455647859288092
IVKIAKRF	8	Unmodified	_IVKIAKRF_					0	0	0			REV__ENSG00000146383|ENST00000275198|TAAR6	REV__ENSG00000146383|ENST00000275198|TAAR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7979736328125	2	487.829112	973.643671	-0.68355	-0.00033346	1.0918	0.0005326	0.40823	0.00019915	487.82906954419	50.161	0.18989	50.161	50.052	50.242	0					8	5	2	0	0	0	0.027866	1	5239	5239		14.664	0	1	132940	+		29256	24483	20143	20181	33767	33767					0.15579524198790295
IVKIEGTVL	9	Unmodified	_IVKIEGTVL_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3097229003906	2	486.310418	970.606283	-0.58198	-0.00028302	-0.10944	-5.3223E-05	-0.69142	-0.00033624	486.31014809000266	44.774	0.73051	44.562	44.257	44.988	-0.21109					43	18	3	0	0	0	0.67308	1	4182	4182		47.916	1.9636	1	1125200	+		29257	26352	20144	20182	33768	33768					0.11980388142512766
IVKIEGTVL	9	Unmodified	_IVKIEGTVL_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	486.310418	970.606283	-0.93526	-0.00045483	0.23094	0.00011231	-0.70432	-0.00034252	486.3103548117762	44.622	0.66168	44.521	44.243	44.905	-0.10087	-0.015228	0.0001881	NaN	47.916	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303900	+		29258	26352	20144	20182							0.11980388142512766
IVKIHADKP	9	Unmodified	_IVKIHADKP_					0	0	0			REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.305419921875	2	510.813659	1019.61277	-0.097782	-4.9948E-05	-0.29379	-0.00015007	-0.39157	-0.00020002	510.8132448351742	65.933	0.70203	65.66	65.362	66.064	-0.27282					28	18	2	0	0	0	0.024319	1	7831	7831		47.657	0	1	553950	+		29259	32113	20145	20183	33769	33769					0.10374326093892705
IVKMSSPNLN	10	Unmodified	_IVKMSSPNLN_					0	0	0		nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3024291992188	2	551.799891	1101.58523	-0.18215	-0.00010051	3.8237	0.0021099	3.6415	0.0020094	551.8020310580248	70.481	0.58241	70.209	69.869	70.451	-0.27185					27	15	3	0	0	0	0.03519	1	8184	8184		30.318	11.214	1	2371400			29260	8582	20146	20184	33770	33770					0.03850054771373834
IVKMVLQI	8	Unmodified	_IVKMVLQI_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2878112792969	2	472.304081	942.59361	0.1964	9.2761E-05	-2.4053	-0.001136	-2.2089	-0.0010433	472.3029576005281	94.152	0.60951	94.152	93.951	94.561	-0.00023651					26	14	3	0	0	0	0.027866	1	11919	11919		30.504	6.3009	1	155860	+		29261	25684	20147	20185	33771	33771					0.12001653478637309
IVKNLRDD	8	Unmodified	_IVKNLRDD_					0	0	0			REV__ENST00000524867.1_1_11:810234-811767:+|nuORF	REV__ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.8135681152344	2	486.777274	971.539994	0.20807	0.00010128	-3.2743	-0.0015939	-3.0663	-0.0014926	486.77670941999577	21.465	0.62484	21.288	20.967	21.591	-0.17721					24	12	3	0	0	0	0.027866	1	695	695		65.803	12.452	1	29323	+		29262	27127	20148	20186	33772	33772					0.05308572300452852
IVKPYIAW	8	Unmodified	_IVKPYIAW_					0	0	0		ENST00000478965.1_1_5:94161779-94162088:-|nuORF	ENST00000478965.1_1_5:94161779-94162088:-|nuORF	ENST00000478965.1_1_5:94161779-94162088:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2744140625	2	495.294571	988.574589	0.44681	0.0002213	-3.389	-0.0016786	-2.9422	-0.0014573	495.29298028681933	71.884	0.9066	71.894	71.543	72.45	0.0097733					33	23	2	0	0	0	0.027866	1	8724	8724		28.254	4.7316	1	417320			29263	15159	20149	20187	33773	33773					0.0798444017921156
IVKQKTTE	8	Unmodified	_IVKQKTTE_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2715759277344	2	473.782025	945.549496	0.23098	0.00010943	0.73722	0.00034928	0.9682	0.00045871	473.7819765458078	34.422	0.7874	34.198	33.997	34.785	-0.22412					29	19	2	0	0	0	0.027866	1	2610	2610		50.025	9.4519	1	466320			29264	10291	20150	20188	33774	33774					0.07454340585991304
IVKVILSELLS	11	Unmodified	_IVKVILSELLS_					0	0	0		ENSG00000131748|ENST00000336308|STARD3;ENST00000484773.6_1_17:37809763-37814894:+|nuORF;ENST00000544210.6_1_17:37814089-37815307:+|nuORF	ENSG00000131748|ENST00000336308|STARD3	ENSG00000131748|ENST00000336308|STARD3	MSMS	OPSCC_39_ClassI_Rep-2	2	405.2657775878906	3	405.263718	1212.76933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.54	1	113.52	113.02	114.02	-0.015572								0	0	0	1.7088	1	14100	14100		5.6988	1.0862	1				29265	4547	20151	20189	33775	33775					0.17145146473694695
IVKWLCVD	8	Unmodified	_IVKWLCVD_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7979736328125	2	488.270238	974.525924	-0.46638	-0.00022772	2.9937	0.0014617	2.5273	0.001234	488.2716260583054	75.999	0.44388	75.754	75.581	76.025	-0.24455					18	11	2	0	0	0	0.027866	1	9300	9300		44.531	12.576	1	265860	+		29266	23401	20152	20190	33776	33776					0.03764203547814304
IVLAATDVLQ	10	Unmodified	_IVLAATDVLQ_					0	0	0			REV__RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	REV__RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8126831054688	2	521.810782	1041.60701	-0.37996	-0.00019827	4.1607	0.0021711	3.7807	0.0019728	521.8129367151431	41.316	0.74377	41.316	40.944	41.688	0					65	18	4	0	0	0	1.118	1	3686	3686		30.318	2.4355	1	14596000	+		29267	29133	20153	20191	33777	33777					0.0878718279154782
IVLCKKCSA	9	Unmodified	_IVLCKKCSA_					0	0	0			REV__ENSG00000135372|ENST00000257829|NAT10	REV__ENSG00000135372|ENST00000257829|NAT10	MSMS	OPSCC_40_ClassI_Rep-1	4	482.770751953125	2	482.769548	963.524544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.004	1	95.867	95.367	96.367	-0.13673								0	0	0	0.6291	1	11849	11849		35.618	8.8222	1		+		29268	23536	20154	20192	33778	33778					0.04132246187407418
IVLDKDLGIPK	11	Unmodified	_IVLDKDLGIPK_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;ENST00000479534.5_1_1:17395541-17401618:-|nuORF	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8719482421875	2	605.873914	1209.73327	0.74452	0.00045108	-3.6438	-0.0022077	-2.8993	-0.0017566	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	1.013	1	12211	12211		33.922	3.6039	1	1081300			29269	3608	20155	20193	33779	33779					0.13679689296827746
IVLEATYTGT	10	Unmodified	_IVLEATYTGT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2838745117188	2	534.284597	1066.55464	-0.34549	-0.00018459	0.89184	0.0004765	0.54635	0.0002919	534.2854367620389	105.78	1.0462	105.77	105.28	106.33	-0.0013199					80	36	3	0	0	0	1.0665	1	13543	13543		37.159	5.2042	1	240410			29270	6479	20156	20194	33780	33780					0.024025996579666753
IVLEPAQG	8	Unmodified	_IVLEPAQG_					0	0	0			REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22	REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.7373962402344	2	413.737086	825.459619	-0.1927	-7.9727E-05	2.3197	0.00095976	2.127	0.00088004	413.73704064398663	75.535	0.68617	75.535	75.269	75.956	0					54	18	4	0	0	0	0.42327	1	9278	9278		94.006	17.16	1	1896400	+		29271	37096	20157	20195	33781	33781					0.03990710977427625
IVLEPAQG	8	Unmodified	_IVLEPAQG_					0	0	0			REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22	REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	413.737086	825.459619	-0.1927	-7.9727E-05	2.3197	0.00095976	2.127	0.00088004	413.73704064398663	75.535	0.68617	75.535	75.269	75.956	0	-0.01272	3.4269E-05	NaN	94.006	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1896400	+		29272	37096	20157	20195							0.03990710977427625
IVLEPAQG	8	Unmodified	_IVLEPAQG_					0	0	0			REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22	REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	413.737086	825.459619	0.010264	4.2466E-06	2.4339	0.001007	2.4442	0.0010112	413.736956371416	75.796	0.72003	75.552	75.229	75.949	-0.24455	0.0042505	0.00012874	NaN	94.006	58	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1878300	+		29273	37096	20157	20195							0.03990710977427625
IVLEPRML	8	Unmodified	_IVLEPRML_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8365478515625	2	485.791338	969.568123	-0.12069	-5.8632E-05	0.23916	0.00011618	0.11846	5.7549E-05	485.791551555569	33.765	0.60327	33.541	33.2	33.803	-0.22412					36	14	3	0	0	0	0.027866	1	2455	2455		62.978	10.679	1	877720	+		29274	20389	20158	20196	33782	33782					0.08212178956205207
IVLFNEVLP	9	Unmodified	_IVLFNEVLP_					0	0	0			REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3096923828125	2	522.310418	1042.60628	0.10204	5.3299E-05	-0.024578	-1.2837E-05	0.077467	4.0462E-05	522.3102049687636	102.31	0.61835	102.3	101.97	102.59	-0.0054474					32	13	3	0	0	0	0.20967	1	13033	13033		87.754	9.4905	1	603240	+		29275	32556	20159	20197	33783	33783					0.08668388142518779
IVLFNEVLP	9	Unmodified	_IVLFNEVLP_					0	0	0			REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.310418	1042.60628	-0.26218	-0.00013694	0.46211	0.00024136	0.19993	0.00010442	522.3105369504785	102.23	0.8513	102.24	101.82	102.67	0.0073471	0.093164	0.00029326	NaN	87.754	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578320	+		29276	32556	20159	20197							0.08668388142518779
IVLFNEVLP	9	Unmodified	_IVLFNEVLP_					0	0	0			REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	522.310418	1042.60628	0.10204	5.3299E-05	-0.024578	-1.2837E-05	0.077467	4.0462E-05	522.3102049687636	102.31	0.61835	102.3	101.97	102.59	-0.0054474	0.15622	-0.00021514	NaN	87.754	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603240	+		29277	32556	20159	20197							0.08668388142518779
IVLFNEVLP	9	Unmodified	_IVLFNEVLP_					0	0	0			REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.310418	1042.60628	0.16421	8.5769E-05	-0.032647	-1.7052E-05	0.13156	6.8717E-05	522.3103003428224	102.15	0.46993	102.02	101.8	102.27	-0.12931	-0.12367	-0.00022357	NaN	87.754	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286880	+		29278	32556	20159	20197							0.08668388142518779
IVLFNEVLP	9	Unmodified	_IVLFNEVLP_					0	0	0			REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.310418	1042.60628	0.30782	0.00016078	-0.02622	-1.3695E-05	0.2816	0.00014708	522.3101961917486	102.11	0.474	101.99	101.76	102.23	-0.12666	-0.15999	-0.00021686	NaN	87.754	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297040	+		29279	32556	20159	20197							0.08668388142518779
IVLFNEVLP	9	Unmodified	_IVLFNEVLP_					0	0	0			REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	REV__ENST00000442128.2_1_2:96195597-96195723:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.310418	1042.60628	0.3134	0.00016369	-0.18074	-9.4402E-05	0.13266	6.9291E-05	522.3101939606751	102.23	0.50584	102.06	101.78	102.29	-0.17178	-0.086096	-0.00037827	NaN	87.754	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324460	+		29280	32556	20159	20197							0.08668388142518779
IVLHFAKQTLI	11	Unmodified	_IVLHFAKQTLI_					0	0	0			REV__nc|ENSG00000256590|A0JD37|TRDV3	REV__nc|ENSG00000256590|A0JD37|TRDV3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	641.882568359375	2	641.897723	1281.78089	0.55099	0.00035368	2.5588	0.0016425	3.1098	0.0019962	641.8989109230627	95.885	0.12916	95.885	95.778	95.907	0					4	2	2	0	0	0	0.024756	1	12218	12218		36.447	5.8779	1	22969	+		29281	37177	20160	20198	33784	33784					0.15127388287692156
IVLHGLTSID	10	Unmodified	_IVLHGLTSID_					0	0	0			REV__BIRC6-SPAST|1|fusion;REV__BIRC6-SPAST|3|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2734985351562	2	534.308406	1066.60226	-0.45139	-0.00024118	0.015167	8.1036E-06	-0.43623	-0.00023308	534.3082976456974	94.045	1.101	94.045	93.558	94.659	0					69	26	4	0	0	0	0.03519	1	12035	12035		99.375	44.599	1	1248500	+		29282	19208;19209	20161	20199	33785	33785					0.07162298648813703
IVLHGLTSID	10	Unmodified	_IVLHGLTSID_					0	0	0			REV__BIRC6-SPAST|1|fusion;REV__BIRC6-SPAST|3|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2736206054688	2	534.308406	1066.60226	-0.58387	-0.00031197	3.5836	0.0019147	2.9997	0.0016028	534.3101868099575	94.922	0.51985	94.922	94.659	95.179	0					16	11	2	0	0	0	0.03519	1	12048	12048		68.787	15.435	1	62469	+		29283	19208;19209	20161	20199	33786	33786					0.07162298648813703
IVLHGLTSID	10	Unmodified	_IVLHGLTSID_					0	0	0			REV__BIRC6-SPAST|1|fusion;REV__BIRC6-SPAST|3|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2742919921875	2	534.308406	1066.60226	-0.48304	-0.00025809	3.3178	0.0017728	2.8348	0.0015147	534.3099747284044	94.983	0.60863	94.987	94.661	95.269	0.0041199					17	13	2	0	0	0	0.03519	1	11976	11976		60.972	20.194	1	52839	+		29284	19208;19209	20161	20199	33787	33787					0.07162298648813703
IVLHKTLSS	9	Unmodified	_IVLHKTLSS_					0	0	0			REV__nc|ENSG00000197608|Q6ZN19|ZNF841	REV__nc|ENSG00000197608|Q6ZN19|ZNF841	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.31903076171875	2	499.305667	996.596781	-0.037877	-1.8912E-05	4.2261	0.0021101	4.1882	0.0020912	499.3076288670392	96.874	0.93462	96.874	96.659	97.594	0					35	20	2	0	0	0	0.024487	1	12339	12339		40.573	20.576	1	185490	+		29285	28329	20162	20200	33788	33788					0.09834619856997051
IVLHTISGNN	10	Unmodified	_IVLHTISGNN_					0	0	0			REV__ENSG00000247077|ENST00000498926|PGAM5	REV__ENSG00000247077|ENST00000498926|PGAM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2732543945312	2	534.29583	1066.57711	0.19802	0.0001058	0.46132	0.00024648	0.65934	0.00035228	534.2944050261541	87.249	1.9526	87.27	86.417	88.369	0.021255					111	46	5	0	0	0	0.03519	1	11048	11048		34.173	0	1	390320	+		29286	29006	20163	20201	33789	33789					0.046482438462589926
IVLHTISGNN	10	Unmodified	_IVLHTISGNN_					0	0	0			REV__ENSG00000247077|ENST00000498926|PGAM5	REV__ENSG00000247077|ENST00000498926|PGAM5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.29583	1066.57711	-0.3736	-0.00019961	-2.1578	-0.0011529	-2.5314	-0.0013525	534.2947826289643	87.4	2.4383	87.221	86.437	88.875	-0.17875	0.0087822	3.3987E-05	NaN	34.173	116	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376050	+		29287	29006	20163	20201							0.046482438462589926
IVLHTISGNN	10	Unmodified	_IVLHTISGNN_					0	0	0			REV__ENSG00000247077|ENST00000498926|PGAM5	REV__ENSG00000247077|ENST00000498926|PGAM5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.29583	1066.57711	-0.016219	-8.666E-06	-2.2251	-0.0011888	-2.2413	-0.0011975	534.2946513359475	87.28	2.6168	87.144	86.413	89.03	-0.13613	-0.068243	-3.7862E-05	NaN	34.173	152	62	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455230	+		29288	29006	20163	20201							0.046482438462589926
IVLHTISGNN	10	Unmodified	_IVLHTISGNN_					0	0	0			REV__ENSG00000247077|ENST00000498926|PGAM5	REV__ENSG00000247077|ENST00000498926|PGAM5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.29583	1066.57711	-0.34445	-0.00018404	-2.089	-0.0011161	-2.4334	-0.0013002	534.2947613926575	87.343	2.6315	87.205	86.356	88.987	-0.13734	-0.0068457	0.00010757	NaN	34.173	126	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376990	+		29289	29006	20163	20201							0.046482438462589926
IVLIGYKDA	9	Unmodified	_IVLIGYKDA_					0	0	0			REV__CCT8L2|p.V313L|1|0.11|ENSG00000198445|chr22:16591614-16591614|C/G|missense_variant	REV__CCT8L2|p.V313L|1|0.11|ENSG00000198445|chr22:16591614-16591614|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7673645019531	2	496.294768	990.574983	0.2015	0.0001	0.01089	5.4046E-06	0.21239	0.00010541	496.29434618110787	52.855	1.1163	52.597	51.806	52.922	-0.25838					37	28	2	0	0	0	0.024457	1	5508	5508		29.15	2.4566	1	166370	+		29290	19267	20164	20202	33790	33790					0.0793181510841805
IVLIGYKDA	9	Unmodified	_IVLIGYKDA_					0	0	0			REV__CCT8L2|p.V313L|1|0.11|ENSG00000198445|chr22:16591614-16591614|C/G|missense_variant	REV__CCT8L2|p.V313L|1|0.11|ENSG00000198445|chr22:16591614-16591614|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.294768	990.574983	-0.53377	-0.00026491	0.52999	0.00026303	-0.0037755	-1.8737E-06	496.2948855648366	52.592	0.51865	52.465	52.234	52.753	-0.12705	-0.07975	0.00025858	NaN	42.396	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242560	+		29291	19267	20164	20202							0.0793181510841805
IVLKKSGG	8	Unmodified	_IVLKKSGG_					0	0	0			REV__ENST00000494985.5_1_13:113863983-113873323:+|nuORF	REV__ENST00000494985.5_1_13:113863983-113873323:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	401.2619934082031	2	401.263271	800.511988	0.25207	0.00010115	-3.7878	-0.0015199	-3.5358	-0.0014188	401.2616516837039	85.433	1.2566	85.375	84.98	86.237	-0.057617					73	29	4	0	0	0	1.0574	1	10678	10678		24.203	4.8428	1	3809400	+		29292	23967	20165	20203	33791	33791					0.10375294111054245
IVLKLGWLI	9	Unmodified	_IVLKLGWLI_					0	0	0			REV__ENSG00000110108|ENST00000227525|TMEM109	REV__ENSG00000110108|ENST00000227525|TMEM109	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3291015625	2	527.854796	1053.69504	-0.35003	-0.00018476	-3.8091	-0.0020107	-4.1592	-0.0021954	527.8527187509933	77.083	0.95138	77.083	76.882	77.833	0					45	22	3	0	0	0	0.024412	1	9572	9572		50.025	5.9077	1	689060	+		29293	21841	20166	20204	33792	33792					0.1703384817285496
IVLKLPPNK	9	Unmodified	_IVLKLPPNK_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2636413574219	2	511.342052	1020.66955	0.1284	6.5656E-05	-1.0701	-0.00054716	-0.94165	-0.00048151	511.3413810358357	81.113	0.52701	80.875	80.569	81.096	-0.23784					29	12	3	0	0	0	0.024506	1	9725	9725		30.504	5.0535	1	193860	+		29294	27764	20167	20205	33793	33793					0.1600437365042353
IVLKPLIVP	9	Unmodified	_IVLKPLIVP_					0	0	0		ENST00000344099.3_1_19:19821976-19822144:-|nuORF	ENST00000344099.3_1_19:19821976-19822144:-|nuORF	ENST00000344099.3_1_19:19821976-19822144:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.78204345703125	2	496.349346	990.684139	-0.64953	-0.0003224	0.44279	0.00021978	-0.20675	-0.00010262	496.3493512450239	90.367	0.45987	90.242	90.127	90.587	-0.12512					14	10	2	0	0	0	0.024541	1	11065	11065		8.2313	0	1	26828			29295	12542	20168	20206	33794	33794					0.18842445798566132
IVLKRLAAP	9	Unmodified	_IVLKRLAAP_					0	0	0			REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7957763671875	2	490.834394	979.654236	-0.59281	-0.00029097	0.46428	0.00022789	-0.12853	-6.3088E-05	490.83451623675074	48.547	0.68085	48.614	48.154	48.835	0.066795					24	18	2	0	0	0	0.024541	1	4843	4843		17.365	5.1581	1	226490	+		29296	25305	20169	20207	33795	33795					0.1635950685321177
IVLKVDVVD	9	Unmodified	_IVLKVDVVD_					0	0	0			REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF	REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	500.3065185546875	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.11	1	93.988	93.488	94.488	-0.12215								0	0	0	0.51175	1	11599	11599		51.335	7.2187	1		+		29297	32957	20170	20208	33796	33796					0.10184084279899253
IVLKVDVVD	9	Unmodified	_IVLKVDVVD_					0	0	0			REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF	REV__ENST00000464026.1_1_1:118426024-118439585:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	500.3064880371094	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.075	1	93.928	93.428	94.428	-0.14771								0	0	0	0.63881	1	11572	11572		33.516	3.674	1		+		29298	32957	20170	20208	33797	33797					0.10184084279899253
IVLLLEGSL	9	Unmodified	_IVLLLEGSL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant;KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2778015136719	2	478.804968	955.595384	-0.37418	-0.00017916	-3.057	-0.0014637	-3.4311	-0.0016428	478.8033584854187	35.156	0.60268	35.2	35.014	35.616	0.04406					25	15	3	0	0	0	0.024381	1	2622	2622		29.15	4.9468	1	232630			29299	3837	20171	20209	33798	33798					0.11580985768239316
IVLLLEGSL	9	Unmodified	_IVLLLEGSL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant;KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.804968	955.595384	-0.087036	-4.1673E-05	-1.8946	-0.00090714	-1.9816	-0.00094881	478.8039362145584	35.641	0.27901	35.425	35.255	35.534	-0.21556	0.15828	0.00071684	NaN	29.15	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236670			29300	3837	20171	20209							0.11580985768239316
IVLLLEGSL	9	Unmodified	_IVLLLEGSL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant;KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.804968	955.595384	-0.38935	-0.00018642	-1.9972	-0.00095627	-2.3866	-0.0011427	478.8038606686183	35.617	0.27483	35.405	35.274	35.548	-0.21246	0.13797	0.00061857	NaN	29.15	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202280			29301	3837	20171	20209							0.11580985768239316
IVLLLEGSL	9	Unmodified	_IVLLLEGSL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant;KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.804968	955.595384	-0.30401	-0.00014556	-1.5943	-0.00076337	-1.8983	-0.00090893	478.8039406296992	35.507	0.27131	35.321	35.18	35.452	-0.18675	0.053481	0.0010044	NaN	29.15	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264410			29302	3837	20171	20209							0.11580985768239316
IVLLNGAVAM	10	Unmodified	_IVLLNGAVAM_					0	0	0			REV__ENSG00000171873|ENST00000379453|ADRA1D	REV__ENSG00000171873|ENST00000379453|ADRA1D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.79107666015625	2	500.79662	999.578688	-0.48918	-0.00024498	1.8178	0.00091037	1.3287	0.00066539	500.7974435180571	93.308	0.37936	93.304	93.159	93.538	-0.0042038					21	8	4	0	0	0	0.03519	1	11802	11802		30.504	8.8013	1	1700400	+		29303	26613	20172	20210	33799	33799					0.07888161610640054
IVLLQLIY	8	Unmodified	_IVLLQLIY_					0	0	0			REV__ENSG00000176253|ENST00000641904|OR4K13	REV__ENSG00000176253|ENST00000641904|OR4K13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7979736328125	2	487.817879	973.621205	-0.68524	-0.00033427	3.5124	0.0017134	2.8271	0.0013791	487.8194340852894	50.28	0.22976	50.28	50.146	50.376	0					8	6	2	0	0	0	0.027866	1	5239	5239		15.636	0.97212	1	44919	+		29304	27010	20173	20211	33800	33800					0.13333880010520716
IVLMYRRKS	9	Unmodified	_IVLMYRRKS_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.3505249023438	2	583.347343	1164.68013	-0.025666	-1.4972E-05	2.3488	0.0013702	2.3232	0.0013552	583.3486011260902	105.95	0.47677	105.79	105.59	106.07	-0.16132					51	21	4	0	0	0	0.98128	1	13178	13178		24.203	0.68005	1	722640			29305	7197	20174	20212	33801	33801					0.10438033033210559
IVLMYRRKS	9	Unmodified	_IVLMYRRKS_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	583.347343	1164.68013	-0.12789	-7.4603E-05	2.101	0.0012256	1.9731	0.001151	583.348622044757	105.96	0.55309	105.84	105.53	106.09	-0.1238	0.021993	-0.0014969	NaN	24.203	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132040			29306	7197	20174	20212							0.10438033033210559
IVLNDQRHF	9	Unmodified	_IVLNDQRHF_					0	0	0		ENST00000418088.5_2_1:3659636-3662367:-|nuORF	ENST00000418088.5_2_1:3659636-3662367:-|nuORF	ENST00000418088.5_2_1:3659636-3662367:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.3104248046875	2	571.309272	1140.60399	0.24286	0.00013875	1.6072	0.00091823	1.8501	0.001057	571.3101497180902	74.813	1.8282	74.537	74.132	75.96	-0.27573					144	44	5	0	0	0	0.33245	1	8885	8885		71.296	1.6681	1	37698000			29307	13929	20175	20213	33802	33802					0.03931352457425419
IVLPLDLIV	9	Unmodified	_IVLPLDLIV_					0	0	0			REV__nc|ENSG00000265972|Q9H3M7-2|TXNIP	REV__nc|ENSG00000265972|Q9H3M7-2|TXNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.8309326171875	2	497.830986	993.647419	0.63692	0.00031708	-0.17385	-8.6546E-05	0.46307	0.00023053	497.83050855377445	105.3	1.056	105.3	104.95	106.01	0					70	32	3	0	0	0	0.97516	1	13550	13550		25.45	0	1	1020000	+		29308	29137	20176	20214	33803	33803					0.15034149181997236
IVLRDGKSR	9	Unmodified	_IVLRDGKSR_					0	0	0			REV__ENST00000493449.5_1_16:322367-324481:-|nuORF	REV__ENST00000493449.5_1_16:322367-324481:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7909545898438	2	522.31964	1042.62473	0.73941	0.00038621	1.6511	0.0008624	2.3905	0.0012486	522.3197392314664	71.066	0.94012	70.773	70.329	71.269	-0.29292					38	22	3	0	0	0	0.024288	1	8533	8533		52.937	3.4952	1	543440	+		29309	20565	20177	20215	33804	33804					0.1051194283706991
IVLRYLVQ	8	Unmodified	_IVLRYLVQ_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|211|1|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|211|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7377014160156	2	502.318577	1002.6226	0.62513	0.00031402	-1.3678	-0.00068706	-0.74265	-0.00037305	502.3181960428617	36.113	0.58416	35.915	35.708	36.292	-0.19829					33	15	3	0	0	0	0.027866	1	2823	2823		25.45	6.0902	1	827660	+		29310	36122	20178	20216	33805	33805					0.12139514099271764
IVLSAVSDDI	10	Unmodified	_IVLSAVSDDI_					0	0	0			REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7622680664062	2	516.284597	1030.55464	-0.30037	-0.00015507	-0.28348	-0.00014636	-0.58385	-0.00030143	516.2852415632748	42.628	0.30201	42.396	42.155	42.457	-0.23186					13	7	3	0	0	0	0.03519	1	3816	3816		21.96	0	1	93666	+		29311	22831	20179	20217	33806	33806					0.040585996579466155
IVLSVKLPT	9	Unmodified	_IVLSVKLPT_					0	0	0			REV__ENST00000466845.1_1_3:197581307-197585851:+|nuORF	REV__ENST00000466845.1_1_3:197581307-197585851:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.21502685546875	2	485.320786	968.627018	0.42322	0.0002054	-0.43532	-0.00021127	-0.012092	-5.8684E-06	485.3203466035611	97.926	0.81033	97.924	97.456	98.267	-0.0020752					25	18	2	0	0	0	0.02435	1	12374	12374		51.335	28.293	1	50837	+		29312	33050	20180	20218	33807	33807					0.14144978522176643
IVLTGGDKAF	10	Unmodified	_IVLTGGDKAF_					0	0	0		ENSG00000127884|ENST00000368547|ECHS1	ENSG00000127884|ENST00000368547|ECHS1	ENSG00000127884|ENST00000368547|ECHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2637634277344	2	510.78985	1019.56515	0.096561	4.9322E-05	-0.21585	-0.00011026	-0.11929	-6.0933E-05	510.7900121713658	81.263	0.74142	81.069	80.72	81.461	-0.19334					29	17	3	0	0	0	0.03519	1	9753	9753		23.042	1.0826	1	164860			29313	4264	20181	20219	33808	33808					0.056146271030456774
IVMAKGEKF	9	Unmodified	_IVMAKGEKF_					0	0	0			REV__ENST00000356232.8_1_3:132378683-132378932:+|nuORF	REV__ENST00000356232.8_1_3:132378683-132378932:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7724304199219	2	511.788795	1021.56304	-0.87205	-0.0004463	4.1933	0.0021461	3.3212	0.0016998	511.7908356807092	31.396	0.65868	31.396	31.131	31.789	0					22	15	2	0	0	0	0.02435	1	2138	2138		26.693	3.6504	1	82472	+		29314	30789	20182	20220	33809	33809					0.0531187509358233
IVMDVGCSIN	10	Unmodified	_IVMDVGCSIN_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3037719726562	2	525.751553	1049.48855	-0.30573	-0.00016074	1.1121	0.00058469	0.80637	0.00042395	525.7516102308339	72.724	0.68758	72.447	72.112	72.799	-0.2769					20	15	2	0	0	0	0.03519	1	8483	8483		37.812	0	1	170470			29315	5230	20183	20221	33810	33810					-0.0342125578008563
IVMIMGELY	9	Unmodified	_IVMIMGELY_					0	0	0			REV__ENSG00000161040|ENST00000440067|FBXL13	REV__ENSG00000161040|ENST00000440067|FBXL13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.770751953125	2	534.777039	1067.53953	-0.22428	-0.00011994	0.17184	9.1895E-05	-0.052443	-2.8045E-05	534.7770418110316	63.279	0.82499	63.021	62.706	63.531	-0.25824					38	20	2	0	0	0	0.67308	1	7125	7125		47.916	0	1	5723100	+		29316	25372	20184	20222	33811	33811					0.008456932647732174
IVMPELDV	8	Unmodified	_IVMPELDV_					0	0	0			REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.26629638671875	2	458.246429	914.478305	-0.59937	-0.00027466	-3.2366	-0.0014832	-3.836	-0.0017578	458.2437500401685	28.625	0.38515	28.456	28.213	28.598	-0.16897					11	8	2	0	0	0	0.027866	1	1672	1672		37.028	10.232	1	24373	+		29317	34543	20185	20223	33812	33812					0.017645045569679496
IVMPNILVL	9	Unmodified	_IVMPNILVL_					0	0	0		nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.31866455078125	2	506.317189	1010.61982	-1.1712	-0.00059299	4.4359	0.002246	3.2648	0.001653	506.3193593053551	35.551	0.68307	35.529	35.233	35.917	-0.021763					42	17	4	0	0	0	0.36105	1	2735	2735		68.485	18.46	1	1479400			29318	1499	20186	20224	33813	33813					0.11493922650095101
IVMQAVMIL	9	Oxidation (M)	_IVMQAVM(Oxidation (M))IL_		IVMQAVM(1)IL		IVM(-38)QAVM(38)IL	0	0	1		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.291748046875	2	517.292856	1032.57116	0.043376	2.2438E-05	-0.18009	-9.316E-05	-0.13672	-7.0722E-05	517.2923838376272	54.849	0.78442	54.618	54.213	54.997	-0.23087					53	21	5	0	0	0	0.33184	1	5845	5845		71.378	9.2705	2	2193500			29319	9292	20187	20225	33814	33814		388			0.05617686018695167
IVMQAVMIL	9	Oxidation (M)	_IVMQAVM(Oxidation (M))IL_					0	0	1		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.292856	1032.57116	-0.71156	-0.00036808	1.2334	0.00063805	0.52188	0.00026996	517.2933167834954	54.758	0.72604	54.758	54.357	55.083	0	0.12226	0.000704	NaN	71.378	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1732100			29320	9292	20187	20225				388			0.05617686018695167
IVMQAVMIL	9	Oxidation (M)	_IVMQAVM(Oxidation (M))IL_					0	0	1		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.292856	1032.57116	-0.21815	-0.00011285	0.012291	6.3583E-06	-0.20586	-0.00010649	517.292494391961	54.804	0.89381	54.654	54.339	55.232	-0.15036	0.017562	-0.00055938	NaN	71.378	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1736500			29321	9292	20187	20225				388			0.05617686018695167
IVMQAVMIL	9	Oxidation (M)	_IVMQAVM(Oxidation (M))IL_					0	0	1		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.292856	1032.57116	-0.096753	-5.005E-05	0.56307	0.00029127	0.46631	0.00024122	517.2929915215797	54.505	0.65569	54.603	54.361	55.016	0.098015	-0.032618	1.0447E-05	NaN	71.378	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1620800			29322	9292	20187	20225				388			0.05617686018695167
IVMSSALLVD	10	Unmodified	_IVMSSALLVD_					0	0	0			REV__OR6Q1|p.A209D|1|0.3|ENSG00000279051|chr11:58031578-58031578|C/A|missense_variant	REV__OR6Q1|p.A209D|1|0.3|ENSG00000279051|chr11:58031578-58031578|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3135375976562	2	524.291368	1046.56818	-1.2436	-0.00065199	3.3085	0.0017346	2.065	0.0010826	524.2946538037817	73.213	0.53186	73.213	72.867	73.399	0					21	13	2	0	0	0	0.03519	1	8949	8949		35.618	14.671	1	167190	+		29323	37328	20188	20226	33815	33815					0.04676134165561052
IVMYSSGL	8	Oxidation (M)	_IVM(Oxidation (M))YSSGL_		IVM(1)YSSGL		IVM(83)YSSGL	0	0	1		ENSG00000115827|ENST00000375255|DCAF17;ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENSG00000115827|ENST00000375255|DCAF17;ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2420349121094	2	443.222954	884.431355	-1.6317	-0.00072319	-1.615	-0.00071579	-3.2466	-0.001439	443.2221283100608	38.287	0.23203	38.314	38.23	38.462	0.027275					8	6	2	0	0	0	0.027866	1	3126	3126		83.287	27.783	1	126560			29324	3493;14877	20189	20227	33816	33816		135			-0.015483549941563979
IVNDELPNCIL	11	Unmodified	_IVNDELPNCIL_					0	0	0		ENSG00000076258|ENST00000367749|FMO4	ENSG00000076258|ENST00000367749|FMO4	ENSG00000076258|ENST00000367749|FMO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.8983459472656	3	414.884801	1241.63257	0.31829	0.00013205	-0.89773	-0.00037246	-0.57944	-0.0002404	414.8845465555611	25.114	0.46103	25.195	24.916	25.377	0.08009					15	10	2	0	0	0	0.024751	1	1102	1102		34.087	7.3368	1	43611			29325	1580	20190	20228	33817	33817					0.021422892516966385
IVNDHKFH	8	Unmodified	_IVNDHKFH_					0	0	0			REV__MAPK7|p.I114V|1|0.28|ENSG00000166484|chr17:19379889-19379889|A/G|missense_variant	REV__MAPK7|p.I114V|1|0.28|ENSG00000166484|chr17:19379889-19379889|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.30535888671875	2	505.264333	1008.51411	-0.22072	-0.00011152	-0.21845	-0.00011038	-0.43917	-0.0002219	505.2640686177034	70.045	0.49213	70.058	69.709	70.202	0.012413					23	12	3	0	0	0	0.027866	1	8334	8334		47.916	26.969	1	1153600	+		29326	36354	20191	20229	33818	33818					0.010197228488550536
IVNHGFVQRRK	11	Unmodified	_IVNHGFVQRRK_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.93292236328125	3	451.933588	1352.77894	0.64988	0.0002937	-2.7416	-0.001239	-2.0917	-0.00094533	451.93228283212176	98.767	1.9693	98.763	97.93	99.899	-0.0038834					182	45	5	0	0	0	1.0621	1	12563	12563		21.78	0.74819	1	1384500	+		29327	20234	20192	20230	33819	33819					0.11665772322430712
IVNIFTLCEYW	11	Unmodified	_IVNIFTLCEYW_					0	0	0		ENST00000426431.2_1_12:53808377-53808536:+|nuORF	ENST00000426431.2_1_12:53808377-53808536:+|nuORF	ENST00000426431.2_1_12:53808377-53808536:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.9282531738281	3	467.568813	1399.68461	-0.4358	-0.00020377	2.566	0.0011998	2.1302	0.000996	467.56989332037	23.893	0.64326	23.893	23.523	24.166	0					27	14	3	0	0	0	0.024751	1	1016	1016		41.08	4.7624	1	158360			29328	14087	20193	20231	33820	33820					0.0007545266546458151
IVNKRPRGIN	10	Unmodified	_IVNKRPRGIN_					0	0	0			REV__nc|ENSG00000172987|Q8WWQ2-4|HPSE2	REV__nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.8590087890625	2	583.859464	1165.70437	0.62502	0.00036493	-1.6436	-0.00095962	-1.0186	-0.0005947	583.8583386779724	97.147	1.1257	97.011	96.613	97.738	-0.13671					80	24	4	0	0	0	1.0781	2	11996	11996;12019		35.618	9.5549	1	1483900	+		29329	26729	20194	20232	33821;33822	33821					0.12815009511086828
IVNKRPRGIN	10	Unmodified	_IVNKRPRGIN_					0	0	0			REV__nc|ENSG00000172987|Q8WWQ2-4|HPSE2	REV__nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.8590087890625	2	583.859464	1165.70437	-0.716	-0.00041804	-0.29707	-0.00017345	-1.0131	-0.00059149	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	1.0142	1	12019	12019		44.117	9.9443	1	1429300	+		29330	26729	20194	20232	33823	33823					0.12815009511086828
IVNLIVIHN	9	Unmodified	_IVNLIVIHN_					0	0	0		nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF;ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.8195190429688	2	517.821484	1033.62842	-0.45999	-0.00023819	-3.4532	-0.0017881	-3.9132	-0.0020263	517.8195675051055	91.848	1.1064	91.84	91.451	92.558	-0.0082932					74	26	4	0	0	0	0.90698	1	11609	11609		31.955	5.2619	1	1510800			29331	7123	20195	20233	33824	33824					0.1129461261095912
IVNLLRKYM	9	Unmodified	_IVNLLRKYM_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3455810546875	2	575.344269	1148.67399	0.60113	0.00034586	1.4307	0.00082317	2.0319	0.001169	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	0.96322	1	12307	12307		27.882	1.1893	1	3650400			29332	6832	20196	20234	33825	33825					0.105595148016846
IVNLRDLV	8	Unmodified	_IVNLRDLV_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	471.292559	940.570566	0.54867	0.00025858	-0.64577	-0.00030435	-0.097105	-4.5765E-05	471.2922474433009	50.099	1.4463	50.18	49.775	51.221	0.080994					107	41	4	0	0	0	0.71833	1	5141	5141		65.803	2.8247	1	26009000	+		29333	22000	20197	20235	33826	33826					0.0979035068551184
IVNNETVF	8	Unmodified	_IVNNETVF_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.2449951171875	2	468.245275	934.475997	0.40243	0.00018843	-1.4974	-0.00070113	-1.0949	-0.0005127	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.94517	1	12877	12877		45.952	6.6991	1	4364500	+		29334	21394	20198	20236	33827	33827					0.006137921435083626
IVNPLDHTN	9	Unmodified	_IVNPLDHTN_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000482338.5_1_20:34136370-34144126:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.32720947265625	2	511.766906	1021.51926	0.099	5.0665E-05	0.17206	8.8055E-05	0.27106	0.00013872	511.76665326555076	95.796	1.279	95.659	95.156	96.435	-0.13689					75	29	5	0	0	0	0.024374	1	11907	11907		40.778	9.2484	1	89865			29335	4171	20199	20237	33828	33828					0.009359819207929831
IVNSWLML	8	Unmodified	_IVNSWLML_					0	0	0		ENST00000288937.6_1_11:6702876-6703137:-|nuORF	ENST00000288937.6_1_11:6702876-6703137:-|nuORF	ENST00000288937.6_1_11:6702876-6703137:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2684326171875	2	488.270238	974.525924	-0.84179	-0.00041102	-3.2571	-0.0015904	-4.0989	-0.0020014	488.2687571734604	43.469	1.4289	43.469	42.786	44.215	0					105	39	4	0	0	0	0.71833	1	4087	4087		65.803	2.4969	1	11738000			29336	11773	20200	20238	33829	33829					0.03764203547814304
IVNTDKVGR	9	Unmodified	_IVNTDKVGR_					0	0	0		ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2903137207031	2	501.290548	1000.56654	0.31679	0.0001588	-0.37292	-0.00018694	-0.056134	-2.814E-05	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.70156	1	10468	10468		45.972	0.020292	1	1878500			29337	13827	20201	20239	33830	33830					0.06628261191804086
IVNTDKVGR	9	Unmodified	_IVNTDKVGR_					0	0	0		ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	ENST00000412860.1_1_7:42834686-42835559:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2906799316406	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.93097	1	10550	10550		30.318	2.2362	1	10557000			29338	13827	20201	20239	33831	33831					0.06628261191804086
IVPALAACI	9	Unmodified	_IVPALAACI_					0	0	0		ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7922058105469	2	435.759507	869.50446	0.014526	6.33E-06	4.344	0.0018929	4.3585	0.0018993	435.76139896636386	33.096	0.44046	32.896	32.73	33.171	-0.20019					17	10	2	0	0	0	0.024389	1	2335	2335		39.021	18.54	1	173660			29339	3263	20202	20240	33832	33832					0.0644881851910668
IVPCILLEL	9	Unmodified	_IVPCILLEL_					0	0	0		ENST00000254508.6_1_3:13357788-13358088:-|nuORF	ENST00000254508.6_1_3:13357788-13358088:-|nuORF	ENST00000254508.6_1_3:13357788-13358088:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7243347167969	2	506.809196	1011.60384	-0.17933	-9.0884E-05	3.888	0.0019705	3.7087	0.0018796	506.81107071821265	18.041	0.49695	17.834	17.564	18.061	-0.20669					20	8	4	0	0	0	0.024517	1	234	234		35.201	14.719	1	275350			29340	11380	20203	20241	33833	33833					0.09850216413201451
IVPEAFLVFTS	11	Unmodified	_IVPEAFLVFTS_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF	ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.356201171875	2	611.839539	1221.66453	-1.4506	-0.00088755	-3.6057	-0.0022061	-5.0563	-0.0030937	612.3373963637974	95.258	0.65598	95.121	94.852	95.508	-0.13689					18	14	2	0	0	0	0.024732	1	11743	11743		19.104	0	1	82861			29341	6926	20204	20242	33834	33834					0.06256024997128407
IVPKLQEE	8	Unmodified	_IVPKLQEE_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.30560302734375	2	478.276575	954.538597	0.41365	0.00019784	-2.023	-0.00096757	-1.6094	-0.00076973	478.27596537394385	18.968	0.29643	18.764	18.559	18.856	-0.20371					8	5	2	0	0	0	0.027866	1	337	337		31.955	0	1	11382	+		29342	37043	20205	20243	33835	33835					0.0595093821170849
IVPNLLQT	8	Unmodified	_IVPNLLQT_					0	0	0			REV__OR11L1|p.P283Q|1|0.22|ENSG00000197591|chr1:247841049-247841049|G/T|missense_variant	REV__OR11L1|p.P283Q|1|0.22|ENSG00000197591|chr1:247841049-247841049|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.20660400390625	2	449.273835	896.533118	1.6024	0.00071992	0.017535	7.8782E-06	1.6199	0.0007278	449.2732308588059	23.337	0.82434	23.145	22.617	23.442	-0.19117					41	18	4	0	0	0	0.027866	1	819	819		12.207	0	1	164200	+		29343	37309	20206	20244	33836	33836					0.08071259419898524
IVPNPVAR	8	Unmodified	_IVPNPVAR_					0	0	0			REV__nc|ENSG00000070756|P11940-2|PABPC1	REV__nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.77685546875	2	433.266345	864.518136	0.29424	0.00012749	-0.15819	-6.8537E-05	0.13606	5.8949E-05	433.2660831135199	32	0.47477	31.807	31.554	32.029	-0.19261					14	10	2	0	0	0	0.027866	1	2143	2143		26.796	1.3459	1	38545	+		29344	20434	20207	20245	33837	33837					0.08045812342550107
IVPNPVAR	8	Unmodified	_IVPNPVAR_					0	0	0			REV__nc|ENSG00000070756|P11940-2|PABPC1	REV__nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	433.266345	864.518136	0.25151	0.00010897	0.1686	7.305E-05	0.42011	0.00018202	433.2663227018533	32.073	0.3427	31.837	31.611	31.954	-0.23666	0.008747	9.0708E-05	NaN	26.796	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62179	+		29345	20434	20207	20245							0.08045812342550107
IVPNVLLA	8	Unmodified	_IVPNVLLA_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH;ENST00000592479.5_1_18:59895775-59902130:+|nuORF	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7689208984375	2	419.773471	837.53239	0.4886	0.0002051	-0.36919	-0.00015498	0.11941	5.0125E-05	419.7732453850358	58.353	0.51435	58.353	58.091	58.606	0					20	13	2	0	0	0	0.027866	1	6647	6647		21.702	2.3424	1	171580			29346	4796	20208	20246	33838	33838					0.1071246477083605
IVPTAIKKSY	10	Unmodified	_IVPTAIKKSY_					0	0	0		ENST00000261415.11_1_5:74712843-74715231:-|nuORF	ENST00000261415.11_1_5:74712843-74715231:-|nuORF	ENST00000261415.11_1_5:74712843-74715231:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3405151367188	2	560.342249	1118.66995	0.39378	0.00022065	-4.1525	-0.0023268	-3.7587	-0.0021062	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	1.0122	1	12532	12532		44.377	3.599	1	14365000			29347	11471	20209	20247	33839	33839					0.11535748579603933
IVPTEELNN	9	Unmodified	_IVPTEELNN_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7093505859375	2	514.766571	1027.51859	-0.69843	-0.00035953	0.78669	0.00040496	0.088264	4.5435E-05	514.7668510453907	30.362	0.62852	30.184	29.997	30.625	-0.17818					24	14	2	0	0	0	0.024506	1	1905	1905		6.3127	0.39155	1	319060	+		29348	20615	20210	20248	33840	33840					0.005931424811024044
IVPTEELNN	9	Unmodified	_IVPTEELNN_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.766571	1027.51859	-0.10891	-5.6063E-05	0.16632	8.5614E-05	0.057406	2.9551E-05	514.7665306554223	30.447	0.58562	30.298	30.099	30.684	-0.14952	0.045148	-0.00034456	NaN	10.866	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349030	+		29349	20615	20210	20248							0.005931424811024044
IVPTLLLVGQ	10	Unmodified	_IVPTLLLVGQ_					0	0	0			REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.314453125	2	526.839342	1051.66413	-0.53112	-0.00027982	-0.5909	-0.00031131	-1.122	-0.00059113	526.8388233101713	75.375	0.26907	75.131	74.997	75.266	-0.24454					9	6	2	0	0	0	0.03519	1	9197	9197		27.882	0	1	127800	+		29350	36505	20211	20249	33841	33841					0.1403665006796473
IVPVEITI	8	Unmodified	_IVPVEITI_					0	0	0		ENST00000371870.3_1_1:47799617-47838812:+|nuORF;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.2563171386719	2	442.278586	882.54262	0.2801	0.00012388	0.12238	5.4126E-05	0.40248	0.00017801	442.27973726422397	82.21	0.86182	81.99	81.616	82.478	-0.22016					34	19	3	0	0	0	0.027866	1	9922	9922		26.796	0	1	254570			29351	6929	20212	20250	33842	33842					0.09665027705409557
IVPVLWSVW	9	Unmodified	_IVPVLWSVW_					0	0	0			REV__ENST00000412946.6_1_13:45918924-45926043:+|nuORF	REV__ENST00000412946.6_1_13:45918924-45926043:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.295166015625	2	549.820953	1097.62735	-0.53288	-0.00029299	-2.1712	-0.0011938	-2.7041	-0.0014868	550.3214904660767	95.83	0.92217	95.83	95.434	96.356	0					26	21	2	0	0	0	0.024418	1	12250	12250		28.254	7.7724	1	55010	+		29352	32013	20213	20251	33843	33843					0.0824439824205001
IVPWVCHVQ	9	Unmodified	_IVPWVCHVQ_					0	0	0			REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF	REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.7586059570312	2	540.786587	1079.55862	-0.8728	-0.000472	3.1243	0.0016896	2.2515	0.0012176	540.7879399017306	47.871	0.69323	47.718	47.231	47.924	-0.15301					41	20	3	0	0	0	0.024466	1	4743	4743		33.516	1.5607	1	697950	+		29353	31453	20214	20252	33844	33844					0.022024106706794555
IVPWVCHVQ	9	Unmodified	_IVPWVCHVQ_					0	0	0			REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF	REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.786587	1079.55862	-0.88538	-0.0004788	3.1119	0.0016828	2.2265	0.001204	540.7879861540104	47.681	0.54493	47.681	47.361	47.906	0	0.011041	2.8531E-05	NaN	33.516	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789230	+		29354	31453	20214	20252							0.022024106706794555
IVPWVCHVQ	9	Unmodified	_IVPWVCHVQ_					0	0	0			REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF	REV__ENST00000379933.7_1_6:7189423-7211051:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.786587	1079.55862	-0.60236	-0.00032575	0.48559	0.0002626	-0.11676	-6.3144E-05	541.2875550461574	47.728	0.36261	47.63	47.417	47.78	-0.097553	-0.039585	-0.002812	NaN	33.516	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226870	+		29355	31453	20214	20252							0.022024106706794555
IVPYEKSQL	9	Unmodified	_IVPYEKSQL_					0	0	0			REV__nc|ENSG00000121075|P57082|TBX4	REV__nc|ENSG00000121075|P57082|TBX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.825439453125	2	538.802957	1075.59136	-0.63533	-0.00034232	-0.81271	-0.00043789	-1.448	-0.00078021	538.8028036629692	50.769	0.51038	50.769	50.445	50.956	0					18	14	2	0	0	0	0.022587	1	5362	5362		64.207	0	1	260980	+		29356	22581	20215	20253	33845	33845					0.05658896274530889
IVQDLEVW	8	Unmodified	_IVQDLEVW_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30303955078125	2	501.26875	1000.52295	-0.59686	-0.00029919	2.4171	0.0012116	1.8202	0.00091242	501.7738570676173	25.888	1.0055	25.652	25.262	26.268	-0.23603					38	26	2	0	0	0	0.027866	1	1266	1266		62.978	18.862	1	125170			29357	3158	20216	20254	33846	33846					0.0227065169465277
IVQFEALTS	9	Unmodified	_IVQFEALTS_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.78692626953125	2	504.274032	1006.53351	0.81341	0.00041018	1.6889	0.00085165	2.5023	0.0012618	504.7774886774712	54.203	0.20131	54.301	54.225	54.426	0.098015					8	5	2	0	0	0	0.024436	1	5856	5856		47.916	21.223	1	128060	+		29358	28421	20217	20255	33847	33847					0.030506343490856125
IVQIRESR	8	Unmodified	_IVQIRESR_					0	0	0			REV__ENST00000463407.5_1_13:25905583-25905760:+|nuORF	REV__ENST00000463407.5_1_13:25905583-25905760:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2533264160156	2	500.79854	999.582528	-0.12391	-6.2052E-05	0.28762	0.00014404	0.16372	8.1989E-05	500.7985208595584	95.767	0.51479	95.767	95.519	96.034	0					22	11	3	0	0	0	0.027866	1	12196	12196		25.45	0	1	114310	+		29359	32933	20218	20256	33848	33848					0.08271967428697735
IVQKITSPSL	10	Unmodified	_IVQKITSPSL_					0	0	0		ENSG00000108557|ENST00000353383|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1	ENSG00000108557|ENST00000353383|RAI1	ENSG00000108557|ENST00000353383|RAI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8021240234375	2	543.331882	1084.64921	-0.64979	-0.00035305	-0.42435	-0.00023056	-1.0741	-0.00058361	543.3314986367856	57.107	1.1193	56.943	56.313	57.432	-0.16431					59	30	4	0	0	0	0.03519	1	6345	6345		31.53	7.0106	1	767260			29360	2908	20219	20257	33849	33849					0.11027158199954101
IVQLVFPAL	9	Unmodified	_IVQLVFPAL_					0	0	0		ENSG00000181631|ENST00000325602|P2RY13;nc|ENSG00000181631|Q9BPV8-2|P2RY13;P2RY13|p.N84Kfs*20|1|0.41|ENSG00000181631|chr3:151328804-151328805|-/T|frameshift_variant	ENSG00000181631|ENST00000325602|P2RY13	ENSG00000181631|ENST00000325602|P2RY13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7543640136719	2	500.315503	998.616454	0.053555	2.6794E-05	-4.26	-0.0021313	-4.2064	-0.0021045	500.3134738961463	69.656	0.32797	69.406	69.196	69.524	-0.25063					9	7	2	0	0	0	0.024466	1	8068	8068		25.45	2.4077	1	62944			29361	9055	20220	20258	33850	33850					0.11708995867729755
IVQPFSKP	8	Unmodified	_IVQPFSKP_					0	0	0		nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.2665100097656	2	458.268553	914.522553	-0.42969	-0.00019691	-3.9564	-0.0018131	-4.3861	-0.00201	458.2665680426582	28.534	1.129	28.382	28.04	29.169	-0.15195					61	26	3	0	0	0	0.59392	1	1656	1656		76.847	11.043	1	2205600			29362	5172	20221	20259	33851	33851					0.06187276765467686
IVQQKALPL	9	Unmodified	_IVQQKALPL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.32379150390625	2	505.32386	1008.63317	0.43061	0.0002176	-1.1927	-0.00060271	-0.76212	-0.00038512	505.3233501309143	79.104	3.6681	78.849	78.471	82.139	-0.25471					219	87	5	0	0	0	0.4855	1	9433	9433		60.294	3.5729	1	36200000			29363	872	20222	20260	33852	33852					0.12919496753693238
IVQTAELIF	9	Unmodified	_IVQTAELIF_					0	0	0			REV__PTPRZ1-TSPAN33|1|fusion	REV__PTPRZ1-TSPAN33|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3192749023438	2	517.30005	1032.58555	0.047682	2.4666E-05	-1.0915	-0.00056465	-1.0438	-0.00053998	517.2995934443774	77.146	0.50723	77.146	76.919	77.426	0					19	11	2	0	0	0	0.024319	1	9534	9534		66.429	11.665	1	400050	+		29364	37421	20223	20261	33853	33853					0.07055797762859584
IVQVERSE	8	Unmodified	_IVQVERSE_					0	0	0			REV__ENST00000285021.11_1_3:14186762-14186933:-|nuORF	REV__ENST00000285021.11_1_3:14186762-14186933:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29766845703125	2	480.261456	958.50836	0.79042	0.00037961	4.0685	0.001954	4.859	0.0023336	480.26285837146946	19.302	0.39709	19.141	18.885	19.282	-0.16079					11	7	2	0	0	0	0.027866	1	389	389		38.806	0	1	34871	+		29365	29912	20224	20262	33854	33854					0.02744579546526893
IVQVRFTPT	9	Unmodified	_IVQVRFTPT_					0	0	0			REV__ENST00000550103.2_1_14:90315160-90397958:-|nuORF	REV__ENST00000550103.2_1_14:90315160-90397958:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.813720703125	2	530.811116	1059.60768	0.25669	0.00013625	3.5222	0.0018696	3.7789	0.0020059	530.8128579958319	77.838	1.8187	77.596	77.276	79.095	-0.24233					96	42	4	0	0	0	0.35646	1	9307	9307		68.787	2.9837	1	3355600	+		29366	34898	20225	20263	33855	33855					0.0802602223127451
IVRAITSKP	9	Unmodified	_IVRAITSKP_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2010192871094	2	492.813659	983.612765	-0.32085	-0.00015812	0.62525	0.00030813	0.3044	0.00015001	492.8136924122435	41.972	0.77411	41.74	41.232	42.006	-0.23186					33	20	2	0	0	0	0.024397	1	3773	3773		31.53	0	1	362020	+		29367	20725	20226	20264	33856	33856					0.12030326093872645
IVRAPTNYF	9	Unmodified	_IVRAPTNYF_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7940673828125	2	540.795466	1079.57638	0.55985	0.00030276	-1.0256	-0.00055463	-0.46574	-0.00025187	540.794645841496	51.4	0.79163	51.288	50.973	51.765	-0.11163					36	13	4	0	0	0	0.50848	1	5288	5288		58.782	12.81	1	1676600	+		29368	19687	20227	20265	33857	33857					0.039774491971684256
IVRCLAFAP	9	Unmodified	_IVRCLAFAP_					0	0	0		ENST00000589329.5_1_18:54314691-54318424:-|nuORF	ENST00000589329.5_1_18:54314691-54318424:-|nuORF	ENST00000589329.5_1_18:54314691-54318424:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.77850341796875	2	495.28368	988.552807	-0.48558	-0.0002405	-2.6335	-0.0013043	-3.119	-0.0015448	495.2827418967603	21.248	0.8199	21.248	21.048	21.868	0					38	16	3	0	0	0	0.024412	1	647	647		31.955	2.1133	1	344880			29369	17308	20228	20266	33858	33858					0.05807312158992772
IVREVAID	8	Unmodified	_IVREVAID_					0	0	0			REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.3128356933594	2	457.768917	913.523281	-0.55251	-0.00025292	-0.769	-0.00035202	-1.3215	-0.00060495	457.76825836415577	44.481	0.64754	44.481	44.215	44.862	0					37	18	3	0	0	0	0.027866	1	4219	4219		51.335	10.763	1	742990	+		29370	29026	20229	20267	33859	33859					0.06306071414508096
IVRGDQNATT	10	Unmodified	_IVRGDQNATT_					0	0	0			REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2882690429688	2	537.780544	1073.54654	-0.58859	-0.00031653	0.3597	0.00019344	-0.22889	-0.00012309	537.7806857202903	24.115	0.62943	24.193	23.78	24.41	0.078344					29	13	3	0	0	0	0.03519	1	920	920		32.812	10.853	1	201720	+		29371	19961	20230	20268	33860	33860					0.01270465461175263
IVRGDQNATT	10	Unmodified	_IVRGDQNATT_					0	0	0			REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.780544	1073.54654	-0.93307	-0.00050179	0.020434	1.0989E-05	-0.91263	-0.0004908	537.7807531013335	24.228	0.43517	24.228	23.994	24.429	0	-0.0030822	-0.00011567	NaN	32.812	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171510	+		29372	19961	20230	20268							0.01270465461175263
IVRGDQNATT	10	Unmodified	_IVRGDQNATT_					0	0	0			REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.780544	1073.54654	-1.5113	-0.00081275	0.70571	0.00037952	-0.80558	-0.00043323	537.7810467859555	24.245	0.39718	24.198	24	24.398	-0.047148	-0.032809	0.00062139	NaN	32.812	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179930	+		29373	19961	20230	20268							0.01270465461175263
IVRGDQNATT	10	Unmodified	_IVRGDQNATT_					0	0	0			REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.780544	1073.54654	1.3526	0.0007274	-6.1226	-0.0032926	-4.77	-0.0025652	538.2794118891258	24.485	0.30382	24.304	24.114	24.418	-0.18089	0.073585	-0.0067229	NaN	32.812	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31640	+		29374	19961	20230	20268							0.01270465461175263
IVRHGFMLV	9	Unmodified	_IVRHGFMLV_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3319091796875	2	536.310229	1070.60591	-0.21648	-0.0001161	1.8482	0.00099119	1.6317	0.00087509	536.3113169874051	46.588	0.38601	46.492	46.368	46.754	-0.096653					22	10	3	0	0	0	0.024386	1	4548	4548		52.299	0	1	1260400			29375	8503	20231	20269	33861	33861					0.07342689941674507
IVRHGFMLV	9	Unmodified	_IVRHGFMLV_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3310546875	2	536.310229	1070.60591	-0.3701	-0.00019849	1.3779	0.00073899	1.0078	0.0005405	536.3115358825463	46.916	0.16953	46.647	46.526	46.695	-0.26939					8	4	2	0	0	0	0.024443	1	4528	4528		35.201	0	1	472050			29376	8503	20231	20269	33862	33862					0.07342689941674507
IVRLAKFK	8	Unmodified	_IVRLAKFK_					0	0	0			REV__ENST00000486955.2_1_10:126686512-126691658:-|nuORF	REV__ENST00000486955.2_1_10:126686512-126691658:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7974853515625	2	487.829112	973.643671	-0.076364	-3.7252E-05	-1.7809	-0.0008688	-1.8573	-0.00090605	487.82842598878966	50.389	0.35797	50.238	50.065	50.423	-0.1512					15	10	2	0	0	0	0.027866	1	5257	5257		33.516	5.2613	1	227630	+		29377	26913	20232	20270	33863	33863					0.15579524198790295
IVRNMKIFV	9	Unmodified	_IVRNMKIFV_					0	0	0			REV__ENSG00000129244|ENST00000250111|ATP1B2	REV__ENSG00000129244|ENST00000250111|ATP1B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3401489257812	2	560.338987	1118.66342	0.38121	0.00021361	1.6489	0.00092396	2.0301	0.0011376	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	0.90698	1	12625	12625		31.955	6.3808	1	13153000	+		29378	23038	20233	20271	33864	33864					0.10883532147249753
IVRPCECSL	9	Unmodified	_IVRPCECSL_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.81024169921875	2	510.254262	1018.49397	-0.50516	-0.00025776	-0.96076	-0.00049023	-1.4659	-0.00074799	510.25334417335773	48.81	1.2073	48.657	48.159	49.366	-0.15276					76	33	3	0	0	0	0.024535	1	5055	5055		12.207	3.9756	1	1689100			29379	10843	20234	20272	33865	33865					-0.014535321976381965
IVRQKLKN	8	Unmodified	_IVRQKLKN_					0	0	0			REV__nc|ENSG00000143748|O15381-5|NVL	REV__nc|ENSG00000143748|O15381-5|NVL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.82684326171875	2	499.827101	997.639649	-0.78252	-0.00039112	-0.059139	-2.9559E-05	-0.84166	-0.00042068	499.82709477009644	21.987	1.2319	21.785	21.421	22.653	-0.20199					69	25	5	0	0	0	0.95417	1	717	717		44.531	2.0566	1	4524900	+		29380	24276	20235	20273	33866	33866					0.1407343470507385
IVRRERIGFRV	11	Unmodified	_IVRRERIGFRV_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5;GALNT5|p.R198Gfs*13|1|0.25|ENSG00000136542|chr2:157258671-157258671|C/-|frameshift_variant	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.62384033203125	3	467.624755	1399.85244	-1.1469	-0.0005363	-1.0555	-0.00049356	-2.2023	-0.0010299	467.62416997487236	107.17	0.54526	107.04	106.79	107.33	-0.1346					60	21	4	0	0	0	1.09	1	13323	13323		14.086	0	1	487560			29381	5029	20236	20274	33867	33867					0.16850320764910975
IVRRRSLT	8	Unmodified	_IVRRRSLT_					0	0	0			REV__ENST00000565945.1_1_16:28602037-28603024:+|nuORF	REV__ENST00000565945.1_1_16:28602037-28603024:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.30450439453125	2	500.82235	999.630147	0.47741	0.0002391	1.5593	0.00078091	2.0367	0.00102	500.8229423689745	58.449	0.8448	58.54	58.26	59.105	0.091217					47	22	3	0	0	0	0.027866	1	6586	6586		31.955	0	1	426070	+		29382	27025	20237	20275	33868	33868					0.13031666419556132
IVRRVIAE	8	Unmodified	_IVRRVIAE_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.743408203125	2	478.306001	954.597449	-0.63453	-0.0003035	0.69156	0.00033078	0.057024	2.7275E-05	478.30619105413103	29.87	0.647	29.87	29.611	30.258	0					37	15	4	0	0	0	0.027866	1	1907	1907		68.485	0	1	620910			29383	6994	20238	20276	33869	33869					0.11833459296701676
IVRSGTHTL	9	Unmodified	_IVRSGTHTL_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP;CON__ENSEMBL:ENSBTAP00000024146	ENSG00000126838|ENST00000261336|PZP;CON__ENSEMBL:ENSBTAP00000024146	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2939147949219	2	492.285266	982.555979	0.17632	8.68E-05	1.5941	0.00078477	1.7705	0.00087157	492.28671272377306	59.105	0.44077	59.191	59.099	59.54	0.085682					20	11	3	0	0	0	0.024292	1	6696	6696		49.442	7.0454	1	155510		+	29384	4218;489	20239	20277	33870	33870					0.06400278537375925
IVRTGNEDL	9	Unmodified	_IVRTGNEDL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2923278808594	2	508.772188	1015.52982	-0.62893	-0.00031998	0.4575	0.00023276	-0.17143	-8.7218E-05	508.7721140944326	50.698	0.79072	50.779	50.543	51.333	0.080994					46	21	3	0	0	0	0.0242	1	5276	5276		51.193	0	1	1705700	+		29385	26810;37445	20240	20278	33871	33871					0.02267964575219139
IVRTPPPLV	9	Unmodified	_IVRTPPPLV_					0	0	0			REV__ENSG00000177992|ENST00000325643|SPATA31E1	REV__ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7662048339844	2	496.318577	990.622602	0.11024	5.4715E-05	0.75343	0.00037394	0.86367	0.00042866	496.31890494398436	79.098	0.74774	79.098	78.783	79.53	0					22	17	2	0	0	0	0.024541	1	9762	9762		12.959	0	1	136620	+		29386	27156	20241	20279	33872	33872					0.12691514099265078
IVRVKKEF	8	Unmodified	_IVRVKKEF_					0	0	0			REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.63385009765625	2	509.824027	1017.6335	0.01545	7.8768E-06	-4.2775	-0.0021808	-4.2621	-0.0021729	509.8218754451119	103.29	0.59122	103.28	103.1	103.69	-0.0046082					27	13	4	0	0	0	0.027866	1	13160	13160		28.254	6.5519	1	186530	+		29387	21438	20242	20280	33873	33873					0.12538916473556583
IVRVLREP	8	Unmodified	_IVRVLREP_					0	0	0			REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF	REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.31365966796875	2	491.313826	980.613099	-0.25574	-0.00012565	0.10122	4.9733E-05	-0.15452	-7.5918E-05	491.3136987164297	22.049	0.61735	21.858	21.613	22.23	-0.19072					33	12	4	0	0	0	0.91239	1	732	732		50.025	4.0726	1	622150	+		29388	35164	20243	20281	33874	33874					0.12201745813740672
IVRVLREP	8	Unmodified	_IVRVLREP_					0	0	0			REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF	REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.3135986328125	2	491.313826	980.613099	-0.34042	-0.00016725	-0.25759	-0.00012656	-0.598	-0.00029381	491.31365385430496	28.917	0.77912	28.748	28.38	29.16	-0.16897					53	17	4	0	0	0	0.65272	3	1725	1713;1725;1737		71.378	0	1	3476000	+		29389	35164	20243	20281	33875;33876;33877	33876					0.12201745813740672
IVRVLREP	8	Unmodified	_IVRVLREP_					0	0	0			REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF	REV__ENST00000561037.5_1_15:89930106-89930766:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.3135986328125	2	491.313826	980.613099	-0.21211	-0.00010421	-0.45565	-0.00022387	-0.66776	-0.00032808	491.31354885555015	28.954	0.68424	28.805	28.529	29.213	-0.14952					46	15	4	0	0	0	0.65272	2	1704	1704;1713		71.378	0	1	4062400	+		29390	35164	20243	20281	33878;33879	33878					0.12201745813740672
IVRVTSDTI	9	Unmodified	_IVRVTSDTI_					0	0	0			REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.29229736328125	2	502.292756	1002.57096	-0.30958	-0.0001555	-0.75779	-0.00038063	-1.0674	-0.00053613	502.2922665015309	38.988	0.69843	38.988	38.761	39.459	0					58	19	4	0	0	0	0.31037	1	3335	3335		74.255	2.3776	1	5285600	+		29391	20645	20244	20282	33880	33880					0.06977725614717656
IVRVVMGDI	9	Unmodified	_IVRVVMGDI_					0	0	0		ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	ENSG00000167332|ENST00000396950|OR51E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7749938964844	2	501.294245	1000.57394	-0.87726	-0.00043976	-2.8831	-0.0014453	-3.7603	-0.001885	501.2925447725169	29.888	0.55483	29.716	29.447	30.002	-0.17258					26	12	3	0	0	0	0.024506	1	1885	1885		23.042	5.6775	1	223830			29392	7674	20245	20283	33881	33881					0.07367277467881195
IVSAILGIMV	10	Oxidation (M)	_IVSAILGIM(Oxidation (M))V_		IVSAILGIM(1)V		IVSAILGIM(66)V	0	0	1		nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-2|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3140258789062	2	516.312103	1030.60965	-0.060536	-3.1256E-05	2.6638	0.0013753	2.6033	0.0013441	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	0.72219	1	12179	12179		65.803	19.851	1	29455000			29393	10052	20246	20284	33882	33882		420			0.09557314924882121
IVSALFAS	8	Unmodified	_IVSALFAS_					0	0	0			REV__ENST00000527217.1_1_11:93343186-93343498:-|nuORF	REV__ENST00000527217.1_1_11:93343186-93343498:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.23272705078125	2	404.234179	806.453805	-0.10547	-4.2633E-05	-3.6241	-0.001465	-3.7296	-0.0015076	404.23247999449234	84.477	3.3436	84.404	82.163	85.507	-0.072769					158	78	4	0	0	0	1.0239	2	10575	10527;10575		33.516	6.7195	1	13931000	+		29394	34471	20247	20285	33883;33884	33884					0.042836124657469554
IVSFLKPLQP	10	Unmodified	_IVSFLKPLQP_					0	0	0		ENST00000587426.5_1_6:146136435-146175755:+|nuORF;ENST00000452617.5_2_6:146136435-146202753:+|nuORF	ENST00000587426.5_1_6:146136435-146175755:+|nuORF	ENST00000587426.5_1_6:146136435-146175755:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.28759765625	2	571.352617	1140.69068	-0.45007	-0.00025715	-3.2732	-0.0018702	-3.7233	-0.0021273	571.3508205578246	65.638	0.33116	65.386	65.189	65.52	-0.25112					11	7	2	0	0	0	0.03519	1	7479	7479		19.997	0.89325	1	99056			29395	14536	20248	20286	33885	33885					0.12596338959269815
IVSHFTLKGK	10	Unmodified	_IVSHFTLKGK_					0	0	0		ENST00000440835.6_1_12:71032156-71032375:-|nuORF	ENST00000440835.6_1_12:71032156-71032375:-|nuORF	ENST00000440835.6_1_12:71032156-71032375:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2369384765625	2	565.340041	1128.66553	-0.75563	-0.00042719	-0.19353	-0.00010941	-0.94916	-0.0005366	565.3396858417133	46.307	0.47667	46.104	45.93	46.406	-0.20226					24	12	3	0	0	0	0.03519	1	4417	4417		26.693	0	1	314140			29396	14351	20249	20287	33886	33886					0.1063428415668568
IVSLGRLLY	9	Unmodified	_IVSLGRLLY_					0	0	0			REV__ENSG00000280094|ENST00000623530|OR1B1	REV__ENSG00000280094|ENST00000623530|OR1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.322265625	2	517.32386	1032.63317	-0.39395	-0.0002038	-0.9758	-0.0005048	-1.3697	-0.0007086	517.3229439024324	73.296	1.257	73.019	72.07	73.327	-0.2769					48	29	3	0	0	0	0.6504	1	8592	8592		49.442	7.0454	1	672130	+		29397	29233	20250	20288	33887	33887					0.11815496753729349
IVSLLLIP	8	Unmodified	_IVSLLLIP_					0	0	0		nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.28680419921875	2	434.299322	866.584091	0.23139	0.00010049	-0.51047	-0.0002217	-0.27908	-0.0001212	434.2998749979243	52.298	0.34061	52.151	51.985	52.326	-0.14735					13	8	2	0	0	0	0.027866	1	5569	5569		23.037	0	1	95627			29398	18566	20251	20289	33888	33888					0.14546208464753363
IVSLLVSVLTP	11	Unmodified	_IVSLLVSVLTP_					0	0	0		ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.254150390625	2	570.865557	1139.71656	-0.91772	-0.0005239	1.889	0.0010784	0.97128	0.00055447	570.8665489496236	40.393	0.30509	40.163	39.93	40.235	-0.23021					12	7	2	0	0	0	0.024798	1	3471	3471		13.454	3.1888	1	86477			29399	8898	20252	20290	33889	33889					0.15229188410899042
IVSPVRPTRR	10	Unmodified	_IVSPVRPTRR_					0	0	0			REV__nc|ENSG00000134504|Q719H9|KCTD1	REV__nc|ENSG00000134504|Q719H9|KCTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.866455078125	2	590.867289	1179.72002	0.62197	0.0003675	-1.8626	-0.0011005	-1.2406	-0.00073303	590.8660983357469	102.35	1.1233	102.34	102.02	103.14	-0.0054474					67	26	5	0	0	0	1.0719	1	13043	13043		36.447	0.82846	1	6109300	+		29400	23459	20253	20291	33890	33890					0.13735296028130506
IVSPVRPTRR	10	Unmodified	_IVSPVRPTRR_					0	0	0			REV__nc|ENSG00000134504|Q719H9|KCTD1	REV__nc|ENSG00000134504|Q719H9|KCTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.8665161132812	2	590.867289	1179.72002	-0.3811	-0.00022518	-1.4461	-0.00085448	-1.8272	-0.0010797	590.8667438142205	102.45	1.104	102.28	101.97	103.08	-0.17178					75	26	5	0	0	0	1.0122	2	12708	12708;12733		44.377	11.565	1	5015400	+		29401	23459	20253	20291	33891;33892	33891					0.13735296028130506
IVSSKKLTR	9	Unmodified	_IVSSKKLTR_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.8182983398438	2	516.332216	1030.64988	0.16991	8.7728E-05	-3.509	-0.0018118	-3.3391	-0.0017241	516.330184907255	21.41	0.28517	21.233	21.065	21.35	-0.17721					7	5	2	0	0	0	0.024427	1	674	674		42.396	0	1	18150			29402	1797	20254	20292	33893	33893					0.1357799763964067
IVSSQGSFL	9	Unmodified	_IVSSQGSFL_					0	0	0		ENSG00000112837|ENST00000369663|TBX18	ENSG00000112837|ENST00000369663|TBX18	ENSG00000112837|ENST00000369663|TBX18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.25421142578125	2	469.2531	936.491647	-0.060418	-2.8352E-05	0.17171	8.0575E-05	0.11129	5.2223E-05	469.2530207597656	77.062	0.66236	76.851	76.544	77.206	-0.21087					25	15	2	0	0	0	0.50848	1	9480	9480		58.782	0	1	1323100			29403	3243	20255	20293	33894	33894					0.0208607866057946
IVSSWLLSL	9	Unmodified	_IVSSWLLSL_					0	0	0			REV__ENST00000440469.1_1_3:196313991-196314096:+|nuORF	REV__ENST00000440469.1_1_3:196313991-196314096:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2743835449219	2	509.302593	1016.59063	0.76034	0.00038724	-0.58619	-0.00029855	0.17416	8.8698E-05	509.302069773439	70.617	0.81867	70.324	70.137	70.956	-0.29291					33	22	2	0	0	0	0.024323	1	8553	8553		35.618	0	1	1085400	+		29404	32528	20256	20294	33895	33895					0.08300101625468415
IVSTDPQKL	9	Unmodified	_IVSTDPQKL_					0	0	0		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7875061035156	2	500.787307	999.560061	0.91517	0.0004583	0.6523	0.00032667	1.5675	0.00078497	500.7870622006358	87.728	1.9609	87.747	87.092	89.052	0.018555					99	46	4	0	0	0	0.11092	1	10981	10981		108.09	11.897	1	3025000			29405	4923	20257	20295	33896	33896					0.060263232404167866
IVSVFHMW	8	Unmodified	_IVSVFHMW_					0	0	0		L1MEd_dup14839|chr11:12978246-12978514:+|1.1627743790377367|0.1235672442981885|3.23|506.0|18|2|anti-sense	L1MEd_dup14839|chr11:12978246-12978514:+|1.1627743790377367|0.1235672442981885|3.23|506.0|18|2|anti-sense	L1MEd_dup14839|chr11:12978246-12978514:+|1.1627743790377367|0.1235672442981885|3.23|506.0|18|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.283935546875	2	509.762581	1017.51061	-0.19567	-9.9748E-05	2.7849	0.0014197	2.5893	0.0013199	509.7640937123595	70.304	0.53542	70.035	69.66	70.196	-0.26915					24	12	4	0	0	0	0.027866	1	8129	8129		49.211	1.5535	1	247450			29406	17837	20258	20296	33897	33897					0.0025533675063798
IVSVHGPAIA	10	Unmodified	_IVSVHGPAIA_					0	0	0			REV__ENSG00000135148|ENST00000412615|TRAFD1	REV__ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2846984863281	2	482.284734	962.554916	-0.35687	-0.00017212	-0.066731	-3.2184E-05	-0.42361	-0.0002043	482.284692551653	54.575	1.5368	54.575	54.249	55.786	0					78	43	2	0	0	0	0.75995	1	6015	6015		63.306	0	1	24056000	+		29407	23519	20259	20297	33898	33898					0.07214064168465484
IVSYVTFMEEV	11	Unmodified	_IVSYVTFMEEV_					0	0	0			REV__ENST00000422095.1_3_7:92000906-92025787:+|nuORF	REV__ENST00000422095.1_3_7:92000906-92025787:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.58544921875	3	439.55294	1315.63699	-0.13837	-6.0821E-05	2.7392	0.001204	2.6008	0.0011432	439.5540697014223	33.158	0.56203	32.958	32.609	33.171	-0.20019					18	13	2	0	0	0	0.024739	1	2334	2334		28.577	0	1	126470	+		29408	32196	20260	20298	33899	33899					-0.008202463253837777
IVTAGTGKVW	10	Unmodified	_IVTAGTGKVW_					0	0	0			REV__ENST00000484700.1_1_2:127413817-127415240:+|nuORF	REV__ENST00000484700.1_1_2:127413817-127415240:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2970581054688	2	516.297842	1030.58113	0.99515	0.00051379	-3.7097	-0.0019153	-2.7146	-0.0014015	516.2958802565673	36.915	1.1491	36.706	36.323	37.472	-0.2092					63	28	4	0	0	0	0.3934	3	2892	2892;2903;2913		99.375	17.07	1	5425800	+		29409	33546	20261	20299	33900;33901;33902	33900					0.06706333339957382
IVTDKYCIT	9	Unmodified	_IVTDKYCIT_					0	0	0		ENST00000248071.5_1_19:16438179-16438317:+|nuORF	ENST00000248071.5_1_19:16438179-16438317:+|nuORF	ENST00000248071.5_1_19:16438179-16438317:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7998046875	2	528.275718	1054.53688	0.44135	0.00023316	-4.0443	-0.0021365	-3.603	-0.0019034	528.2733261238998	83.284	0.60361	83.073	82.704	83.308	-0.21159					28	13	3	0	0	0	0.024447	1	10067	10067		40.778	20.781	1	112310			29410	11331	20262	20300	33903	33903					0.011795611314255439
IVTDWYGAH	9	Unmodified	_IVTDWYGAH_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3004150390625	2	531.256174	1060.49779	-1.2476	-0.00066281	0.36695	0.00019494	-0.88068	-0.00046786	531.2561421258886	31.452	3.8275	31.452	29.528	33.356	0					182	95	3	0	0	0	0.024412	1	1932	1932		31.955	0	1	934190			29411	5186	20263	20301	33904	33904					-0.030034031079139822
IVTEVAVGV	9	Unmodified	_IVTEVAVGV_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000460706.5_1_1:97187363-97236440:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.7656555175781	2	443.765843	885.517133	1.571	0.00069714	-1.2166	-0.00053988	0.35438	0.00015726	443.76515138815245	63.874	1.7566	63.92	63.438	65.195	0.045502					89	47	3	0	0	0	0.20304	1	7424	7424		88.643	20.158	1	1281700			29412	3641	20264	20302	33905	33905					0.06979553183009557
IVTEVAVGV	9	Unmodified	_IVTEVAVGV_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000460706.5_1_1:97187363-97236440:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.765843	885.517133	1.304	0.00057866	-0.83309	-0.0003697	0.47087	0.00020896	443.76529812432005	63.837	1.7183	63.837	63.373	65.091	0	-0.12443	-0.00030756	NaN	88.643	93	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1211000			29413	3641	20264	20302							0.06979553183009557
IVTEVAVGV	9	Unmodified	_IVTEVAVGV_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000460706.5_1_1:97187363-97236440:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.765843	885.517133	0.10021	4.4469E-05	0.21515	9.5476E-05	0.31536	0.00013994	443.7658026198692	64.218	1.3235	63.967	63.3	64.624	-0.25141	0.005071	0.00062278	NaN	88.643	73	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307600			29414	3641	20264	20302							0.06979553183009557
IVTEVAVGV	9	Unmodified	_IVTEVAVGV_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000460706.5_1_1:97187363-97236440:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.765843	885.517133	-0.061503	-2.7293E-05	0.76692	0.00034033	0.70542	0.00031304	443.76598430908587	64.271	0.6337	64.078	63.757	64.391	-0.19243	0.1165	0.0011125	NaN	88.643	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172090			29415	3641	20264	20302							0.06979553183009557
IVTEVAVGV	9	Unmodified	_IVTEVAVGV_					0	0	0		ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000460706.5_1_1:97187363-97236440:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF	ENSG00000117569|ENST00000674951|PTBP2	ENSG00000117569|ENST00000674951|PTBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.765843	885.517133	-0.065042	-2.8863E-05	0.15628	6.935E-05	0.091235	4.0487E-05	443.76583113568415	64.263	0.70886	64.007	63.795	64.504	-0.25562	0.045065	0.00057053	NaN	88.643	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150800			29416	3641	20264	20302							0.06979553183009557
IVTGEPIDYG	10	Unmodified	_IVTGEPIDYG_					0	0	0			REV__nc|ENSG00000231852|P08686-2|CYP21A2	REV__nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.2676391601562	2	532.268947	1062.52334	-0.043787	-2.3306E-05	-2.9612	-0.0015761	-3.005	-0.0015995	532.2673089624143	71.602	0.73943	71.613	71.319	72.059	0.010735					32	19	2	0	0	0	0.71272	1	8610	8610		66.429	5.4573	1	1245300	+		29417	28899	20265	20303	33906	33906					-0.005419733761300449
IVTKRLALV	9	Unmodified	_IVTKRLALV_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.79150390625	2	506.847502	1011.68045	-0.22858	-0.00011586	-0.47021	-0.00023832	-0.69879	-0.00035418	506.847207848218	43.937	0.79635	43.974	43.781	44.578	0.0369					33	22	3	0	0	0	0.023355	1	4200	4200		88.643	25.337	1	744250	+		29418	20892	20266	20304	33907	33907					0.17507776024694977
IVTLETVAR	9	Unmodified	_IVTLETVAR_					0	0	0			REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.29339599609375	2	501.303124	1000.5917	1.4772	0.00074051	0.97157	0.00048705	2.4487	0.0012276	501.3031148489145	74.559	0.88008	74.559	73.955	74.835	0					24	20	2	0	0	0	0.024477	1	9043	9043		27.882	6.9353	1	102500	+		29419	27396	20267	20305	33908	33908					0.09142315994358796
IVTLETVAR	9	Unmodified	_IVTLETVAR_					0	0	0			REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.303124	1000.5917	0.17041	8.5427E-05	2.1591	0.0010823	2.3295	0.0011678	501.3036810939536	74.784	0.497	74.525	74.327	74.824	-0.25887	-0.049217	0.00015153	NaN	58.782	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122240	+		29420	27396	20267	20305							0.09142315994358796
IVTLETVAR	9	Unmodified	_IVTLETVAR_					0	0	0			REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.303124	1000.5917	-0.38124	-0.00019112	3.2461	0.0016273	2.8649	0.0014362	501.30455759856704	74.629	0.37608	74.639	74.397	74.773	0.0096512	0.064242	0.0012414	NaN	58.782	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105580	+		29421	27396	20267	20305							0.09142315994358796
IVTLKDGMLA	10	Unmodified	_IVTLKDGMLA_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8089599609375	2	530.807185	1059.59982	0.093661	4.9716E-05	3.5342	0.001876	3.6279	0.0019257	530.8089194939719	103.76	0.77039	103.63	103.36	104.13	-0.12724					33	19	3	0	0	0	1.1329	1	12913	12913		27.882	5.9224	1	436130			29422	749	20268	20306	33909	33909					0.07240126919509748
IVTLLPVWY	9	Unmodified	_IVTLLPVWY_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.2719116210938	2	552.328611	1102.64267	-0.60744	-0.0003355	-3.0719	-0.0016967	-3.6794	-0.0020322	552.3266071839821	77.904	0.69709	77.92	77.618	78.315	0.015907					34	16	3	0	0	0	0.024541	1	9516	9516		19.36	0	1	414060	+		29423	23803	20269	20307	33910	33910					0.09545265039241713
IVTNGYRLL	9	Unmodified	_IVTNGYRLL_					0	0	0		ENST00000289816.9_2_16:89805609-89805744:+|nuORF	ENST00000289816.9_2_16:89805609-89805744:+|nuORF	ENST00000289816.9_2_16:89805609-89805744:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2389526367188	2	524.811116	1047.60768	-0.82293	-0.00043188	-0.33041	-0.0001734	-1.1533	-0.00060528	524.8109559237238	43.894	0.52517	43.789	43.471	43.996	-0.10468					21	13	2	0	0	0	0.024466	1	4087	4087		42.474	16.9	1	160700			29424	11780	20270	20308	33911	33911					0.08578022231290561
IVTPKQTQGY	10	Unmodified	_IVTPKQTQGY_					0	0	0		ENST00000572418.1_1_17:3807220-3819678:-|nuORF;ENSG00000108405|ENST00000225538|P2RX1	ENST00000572418.1_1_17:3807220-3819678:-|nuORF	ENST00000572418.1_1_17:3807220-3819678:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7700805664062	2	567.811313	1133.60807	-0.0029241	-1.6603E-06	-1.5577	-0.00088447	-1.5606	-0.00088613	568.3112694776183	72.914	1.4774	72.649	72.17	73.647	-0.26479					61	35	3	0	0	0	0.03519	1	8522	8522		40.058	0	1	227640			29425	17057	20271	20309	33912	33912					0.04661397160475644
IVTPLKPVD	9	Unmodified	_IVTPLKPVD_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.3369445800781	2	491.302593	980.590633	1.1048	0.00054278	-0.81	-0.00039796	0.29478	0.00014483	491.30208976824025	82.337	0.45879	82.227	81.921	82.379	-0.11006					14	10	2	0	0	0	0.024477	1	10243	10243		27.882	0	1	90394			29426	1867	20272	20310	33913	33913					0.09956101625471092
IVTQGGTKKTT	11	Unmodified	_IVTQGGTKKTT_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.329833984375	2	567.32987	1132.64519	-0.48805	-0.00027688	0.030002	1.7021E-05	-0.45805	-0.00025986	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.0183	1	11665	11665		32.751	1.2207	1	14972000	+		29427	36860	20273	20311	33914	33914					0.08417068706239661
IVTRRPLVL	9	Unmodified	_IVTRRPLVL_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.80517578125	2	533.858401	1065.70225	-1.122	-0.00059898	-2.6521	-0.0014158	-3.774	-0.0020148	533.8582675099012	44.9	0.2848	44.9	44.758	45.043	0					9	7	2	0	0	0	0.024381	1	4299	4299		37.159	9.2769	1	61431			29428	10073	20274	20312	33915	33915					0.17202580773277987
IVTVILRIP	9	Unmodified	_IVTVILRIP_					0	0	0		ENSG00000203757|ENST00000368145|OR6K3;nc|ENSG00000203757|Q8NGY3|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2689819335938	2	512.349877	1022.6852	-0.40561	-0.00020782	-0.062319	-3.1929E-05	-0.46793	-0.00023975	512.3496399986017	79.013	1.1688	78.841	78.611	79.78	-0.17226					55	27	4	0	0	0	0.024323	1	9849	9849		44.117	3.5442	1	542580			29429	10279	20275	20313	33916	33916					0.17476660167460523
IVTVILRIP	9	Unmodified	_IVTVILRIP_					0	0	0		ENSG00000203757|ENST00000368145|OR6K3;nc|ENSG00000203757|Q8NGY3|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.349877	1022.6852	0.18388	9.4209E-05	-0.2498	-0.00012799	-0.065925	-3.3777E-05	512.3496081380835	78.924	0.71978	78.669	78.384	79.103	-0.25471	-0.1014	-9.4032E-05	NaN	49.442	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494060			29430	10279	20275	20313							0.17476660167460523
IVTVILRIP	9	Unmodified	_IVTVILRIP_					0	0	0		ENSG00000203757|ENST00000368145|OR6K3;nc|ENSG00000203757|Q8NGY3|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.349877	1022.6852	0.13989	7.1671E-05	-0.14123	-7.2357E-05	-0.0013378	-6.8541E-07	512.3496328737539	78.864	0.7164	78.633	78.389	79.105	-0.23141	-0.13752	1.7226E-05	NaN	49.442	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511240			29431	10279	20275	20313							0.17476660167460523
IVTVILRIP	9	Unmodified	_IVTVILRIP_					0	0	0		ENSG00000203757|ENST00000368145|OR6K3;nc|ENSG00000203757|Q8NGY3|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	ENSG00000203757|ENST00000368145|OR6K3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.349877	1022.6852	0.061806	3.1666E-05	-0.27998	-0.00014345	-0.21818	-0.00011178	512.3495301679575	78.806	0.68007	78.65	78.34	79.02	-0.15591	-0.12066	-0.00012496	NaN	49.442	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473760			29432	10279	20275	20313							0.17476660167460523
IVTVRALV	8	Unmodified	_IVTVRALV_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.7922058105469	2	435.792195	869.569838	-0.043957	-1.9156E-05	0.449	0.00019567	0.40505	0.00017652	435.792223546601	33.197	0.75204	32.997	32.69	33.442	-0.20019					43	18	3	0	0	0	0.97924	1	2335	2335		40.573	7.057	1	1129600	+		29433	36386	20276	20314	33917	33917					0.12983556036465416
IVTVRALV	8	Unmodified	_IVTVRALV_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	435.792195	869.569838	-0.20343	-8.8655E-05	0.60818	0.00026504	0.40474	0.00017638	435.7922985173313	33.233	0.88815	33.002	32.627	33.516	-0.23107	-0.0032792	6.1303E-05	NaN	40.573	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1046800	+		29434	36386	20276	20314							0.12983556036465416
IVTVRALV	8	Unmodified	_IVTVRALV_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	435.792195	869.569838	-0.043957	-1.9156E-05	0.449	0.00019567	0.40505	0.00017652	435.792223546601	33.197	0.75204	32.997	32.69	33.442	-0.20019	-0.0088506	-7.7429E-05	NaN	40.573	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129600	+		29435	36386	20276	20314							0.12983556036465416
IVTVRALV	8	Unmodified	_IVTVRALV_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	435.792195	869.569838	-0.31177	-0.00013587	0.5692	0.00024805	0.25744	0.00011219	435.7923048663923	33.183	0.75876	33.018	32.72	33.479	-0.16565	0.01213	2.7334E-05	NaN	40.573	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1170000	+		29436	36386	20276	20314							0.12983556036465416
IVTYPVAIL	9	Unmodified	_IVTYPVAIL_					0	0	0			REV__ENSG00000279111|ENST00000623167|OR10X1	REV__ENSG00000279111|ENST00000623167|OR10X1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.80718994140625	2	494.807511	987.600469	0.12486	6.1784E-05	0.54644	0.00027038	0.6713	0.00033216	494.8074389512768	99.25	2.7238	99.26	97.061	99.785	0.010239					92	62	4	0	0	0	0.67308	1	12673	12673		47.916	5.4411	1	266570	+		29437	29227	20277	20315	33918	33918					0.10617289630840787
IVTYPVAIL	9	Unmodified	_IVTYPVAIL_					0	0	0			REV__ENSG00000279111|ENST00000623167|OR10X1	REV__ENSG00000279111|ENST00000623167|OR10X1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.807511	987.600469	0.63649	0.00031494	-0.12979	-6.4219E-05	0.5067	0.00025072	494.8071756135358	99.486	1.3082	99.486	98.479	99.787	0	0.17343	-0.00047103	NaN	47.916	68	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240230	+		29438	29227	20277	20315							0.10617289630840787
IVTYPVAIL	9	Unmodified	_IVTYPVAIL_					0	0	0			REV__ENSG00000279111|ENST00000623167|OR10X1	REV__ENSG00000279111|ENST00000623167|OR10X1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.807511	987.600469	-0.058361	-2.8877E-05	3.6694	0.0018157	3.6111	0.0017868	494.80889994698265	99.222	0.43113	99.053	98.85	99.281	-0.16862	-0.25939	0.0032888	NaN	47.916	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23375	+		29439	29227	20277	20315							0.10617289630840787
IVVESTAPAE	10	Unmodified	_IVVESTAPAE_					0	0	0		nc|ENSG00000140386|Q9BY12-3|SCAPER;ENSG00000140386|ENST00000563290|SCAPER;ENST00000303521.10_1_15:76673691-77134263:-|nuORF	nc|ENSG00000140386|Q9BY12-3|SCAPER	nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.806640625	2	508.268947	1014.52334	0.52406	0.00026636	0.82136	0.00041747	1.3454	0.00068383	508.26927295865386	20.722	0.39388	20.526	20.336	20.73	-0.19577					11	7	2	0	0	0	0.03519	1	576	576		25.574	0	1	29690			29440	5405	20278	20316	33919	33919					0.016660266238545773
IVVFALVN	8	Unmodified	_IVVFALVN_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.58544921875	2	437.773471	873.53239	-0.17197	-7.5283E-05	-4.0799	-0.0017861	-4.2519	-0.0018613	437.77155943344314	33.242	0.43394	33.042	32.813	33.247	-0.20019					23	10	3	0	0	0	0.027866	1	2334	2334		15.636	0.77134	1	254210	+		29441	26510	20279	20317	33920	33920					0.09056464770844741
IVVFALVN	8	Unmodified	_IVVFALVN_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.773471	873.53239	-0.32514	-0.00014234	-3.872	-0.0016951	-4.1972	-0.0018374	437.77167989035024	33.237	0.48027	33.006	32.752	33.232	-0.23107	-0.013939	0.00023354	NaN	23.037	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121270	+		29442	26510	20279	20317							0.09056464770844741
IVVFALVN	8	Unmodified	_IVVFALVN_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	437.773471	873.53239	-0.31101	-0.00013615	-4.3091	-0.0018864	-4.6201	-0.0020226	437.7715280579887	33.179	0.5164	33.013	32.72	33.236	-0.16565	-0.0072784	-0.00014915	NaN	23.037	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287160	+		29443	26510	20279	20317							0.09056464770844741
IVVFLSLKV	9	Unmodified	_IVVFLSLKV_					0	0	0			REV__nc|ENSG00000206531|Q6Q8B3|CD200R1L	REV__nc|ENSG00000206531|Q6Q8B3|CD200R1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.3260803222656	2	509.338978	1016.6634	-0.51299	-0.00026128	4.0324	0.0020538	3.5194	0.0017926	509.34103368189363	77.868	0.25113	77.884	77.78	78.031	0.015907					6	5	2	0	0	0	0.024457	1	9556	9556		37.159	17.799	1	53850	+		29444	37092	20280	20318	33921	33921					0.1557385541889289
IVVGKEVLA	9	Unmodified	_IVVGKEVLA_					0	0	0		ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2976379394531	2	464.29731	926.580068	0.2301	0.00010684	-0.12361	-5.7392E-05	0.10649	4.9443E-05	464.297125666511	84.822	0.78975	84.847	84.537	85.327	0.025528					46	18	3	0	0	0	0.55828	1	10538	10538		55.504	0	1	2095600			29445	2027	20281	20319	33922	33922					0.11384118971022872
IVVILFFVM	9	Unmodified	_IVVILFFVM_					0	0	0			REV__ENSG00000111371|ENST00000398637|SLC38A1;REV__nc|ENSG00000134294|Q96QD8-2|SLC38A2	REV__ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8309936523438	2	540.829932	1079.64531	-1.5879	-0.00085881	4.1646	0.0022523	2.5766	0.0013935	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	0.80342	1	9281	9281		39.021	0.21535	1	90806000	+		29446	21915;23435	20282	20320	33923	33923					0.10867397172523852
IVVILFFVM	9	Unmodified	_IVVILFFVM_					0	0	0			REV__ENSG00000111371|ENST00000398637|SLC38A1;REV__nc|ENSG00000134294|Q96QD8-2|SLC38A2	REV__ENSG00000111371|ENST00000398637|SLC38A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7535400390625	2	540.829932	1079.64531	-0.99371	-0.00053743	0.79217	0.00042843	-0.20154	-0.000109	540.830206802641	38.628	0.50041	38.406	38.153	38.653	-0.22149					31	12	3	0	0	0	0.024475	1	3209	3209		14.664	0	1	514040	+		29447	21915;23435	20282	20320	33924	33924					0.10867397172523852
IVVKCKADNI	10	Unmodified	_IVVKCKADNI_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.813720703125	2	551.818084	1101.62162	-0.16757	-9.2469E-05	-1.2494	-0.00068946	-1.417	-0.00078193	551.8172894574166	93.319	0.87872	93.319	93.009	93.888	0					51	20	4	0	0	0	0.64538	1	11873	11873		71.877	7.6702	1	1093200	+		29448	24983	20283	20321	33925	33925					0.07486931668040597
IVVLLVDMGE	10	Unmodified	_IVVLLVDMGE_					0	0	0		WDR90|p.T399M|1|0.37|ENSG00000161996|chr16:653414-653414|C/T|missense_variant	WDR90|p.T399M|1|0.37|ENSG00000161996|chr16:653414-653414|C/T|missense_variant	WDR90|p.T399M|1|0.37|ENSG00000161996|chr16:653414-653414|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8314819335938	2	544.307018	1086.59948	-0.046876	-2.5515E-05	-1.4756	-0.00080315	-1.5224	-0.00082867	544.3059575685014	71.645	0.64822	71.383	70.95	71.598	-0.26199					44	15	4	0	0	0	0.03519	1	8370	8370		34.173	7.3764	1	956900			29449	38153	20284	20322	33926	33926					0.059647071996323575
IVVPSADYKV	10	Unmodified	_IVVPSADYKV_					0	0	0			REV__USP32|p.N416S|1|0.11|ENSG00000170832|chr17:60226224-60226224|T/C|missense_variant	REV__USP32|p.N416S|1|0.11|ENSG00000170832|chr17:60226224-60226224|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.8110961914062	2	545.810782	1089.60701	-0.37303	-0.00020361	1.0814	0.00059025	0.70839	0.00038665	545.8117218925679	91.512	1.7794	91.523	91.237	93.017	0.011276					99	42	5	0	0	0	0.79525	1	11502	11502		60.972	0	1	4663500	+		29450	37768	20285	20323	33927	33927					0.0657918279155183
IVVPYVSV	8	Unmodified	_IVVPYVSV_					0	0	0			REV__ENST00000541264.2_2_14:59108324-59108435:+|nuORF	REV__ENST00000541264.2_2_14:59108324-59108435:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.2637634277344	2	438.265479	874.516405	-0.59613	-0.00026126	-3.4481	-0.0015112	-4.0442	-0.0017724	438.2637601024111	40.82	1.1707	40.684	40.381	41.552	-0.13554					61	30	3	0	0	0	1.0572	1	3564	3564		28.254	1.4582	1	1804200	+		29451	34767	20286	20324	33928	33928					0.07412758533951092
IVVSELPI	8	Unmodified	_IVVSELPI_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2729187011719	2	435.270761	868.52697	0.74963	0.00032629	-3.3188	-0.0014446	-2.5691	-0.0011183	435.2689509553337	98.703	0.62022	98.567	98.277	98.897	-0.13625					36	13	4	0	0	0	1.0572	1	12245	12245		28.254	6.2944	1	208150	+		29452	26467	20287	20325	33929	33929					0.08744741188377247
IVVSRGRLR	9	Unmodified	_IVVSRGRLR_					0	0	0		ENSG00000166828|ENST00000300061|SCNN1G	ENSG00000166828|ENST00000300061|SCNN1G	ENSG00000166828|ENST00000300061|SCNN1G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3287963867188	2	528.343449	1054.67235	-0.27198	-0.0001437	-2.9742	-0.0015714	-3.2462	-0.0017151	528.3422581163978	77.703	0.24703	77.719	77.658	77.905	0.015907					7	5	2	0	0	0	0.024405	1	9545	9545		20.947	0.95016	1	81491			29453	7611	20288	20326	33930	33930					0.14719641827923624
IVVSSLKIF	9	Unmodified	_IVVSSLKIF_					0	0	0		TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant;ENSG00000101407|ENST00000373447|TTI1	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	TTI1|p.A823Qfs*40|1|0.09|ENSG00000101407|chr20:38006233-38006233|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7926330566406	2	503.320786	1004.62702	-0.66956	-0.000337	0.9157	0.00046089	0.24614	0.00012389	503.32108419307787	64.416	0.50681	64.161	63.919	64.426	-0.25563					23	12	3	0	0	0	0.024495	1	7295	7295		42.396	20.436	1	226720			29454	2321	20289	20327	33931	33931					0.12488978522185334
IVVYWREG	8	Unmodified	_IVVYWREG_					0	0	0		ENST00000334126.11_1_11:73881867-73882056:-|nuORF	ENST00000334126.11_1_11:73881867-73882056:-|nuORF	ENST00000334126.11_1_11:73881867-73882056:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.79669189453125	2	511.276909	1020.53927	-0.8058	-0.00041199	0.5083	0.00025988	-0.29751	-0.00015211	511.27715854662904	61.141	0.43943	60.887	60.697	61.137	-0.25373					21	10	3	0	0	0	0.027866	1	6825	6825		29.842	16.882	1	211050			29455	12379	20290	20328	33932	33932					0.029817776514164507
IVWAEEKHQ	9	Unmodified	_IVWAEEKHQ_					0	0	0			REV__ENSG00000159131|ENST00000381815|GART	REV__ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.822021484375	2	570.29583	1138.57711	-1.6079	-0.00091695	-3.764	-0.0021466	-5.3718	-0.0030635	570.2925058442245	51.841	0.42982	51.931	51.647	52.077	0.089775					21	11	3	0	0	0	0.024487	1	5436	5436		31.955	15.482	1	118910	+		29456	25234	20291	20329	33933	33933					0.013362438462309001
IVWDLVGR	8	Unmodified	_IVWDLVGR_					0	0	0			REV__ENST00000382754.4_1_13:21331741-21348055:-|nuORF	REV__ENST00000382754.4_1_13:21331741-21348055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7842102050781	2	479.279452	956.544351	0.81701	0.00039158	-4.3816	-0.0021	-3.5646	-0.0017084	479.27726654888494	96.228	0.97208	96.234	95.732	96.704	0.0065002					60	22	4	0	0	0	0.027866	1	12286	12286		17.365	1.7232	1	1734500	+		29457	31547	20292	20330	33934	33934					0.06434081514055379
IVWPGPVVW	9	Unmodified	_IVWPGPVVW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.3049926757812	2	526.80002	1051.58549	0.59509	0.00031349	-2.1171	-0.0011153	-1.522	-0.00080177	526.7993079802612	97.764	0.55914	97.627	97.331	97.89	-0.1367					16	12	2	0	0	0	0.023092	1	12089	12089		72.62	43.47	1	106960			29458	8881	20293	20331	33935	33935					0.06175842553511757
IVYALEEDD	9	Unmodified	_IVYALEEDD_					0	0	0			REV__ENSG00000167113|ENST00000300452|COQ4	REV__ENSG00000167113|ENST00000300452|COQ4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.82080078125	2	533.750587	1065.48662	-0.78635	-0.00041972	2.0555	0.0010971	1.2691	0.0006774	534.2521677679084	69.659	0.1657	69.674	69.546	69.712	0.015121					5	3	2	0	0	0	0.024354	1	8316	8316		30.504	1.3541	1	34536	+		29459	26107	20294	20332	33936	33936					-0.043502699927103095
IVYCKIEDI	9	Unmodified	_IVYCKIEDI_					0	0	0		nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182732|P49758-2|RGS6;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-8|RGS6;ENSG00000182732|ENST00000553525|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6	nc|ENSG00000182732|P49758-7|RGS6	nc|ENSG00000182732|P49758-7|RGS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.310302734375	2	548.291368	1094.56818	-0.36419	-0.00019968	-0.07534	-4.1308E-05	-0.43953	-0.00024099	548.2907424808426	68.514	0.66138	68.221	67.781	68.442	-0.29267					24	16	2	0	0	0	0.024405	1	8120	8120		27.882	4.8398	1	68120			29460	18570	20295	20333	33937	33937					0.024681341655195865
IVYPGIAVFF	10	Unmodified	_IVYPGIAVFF_					0	0	0		ENSG00000183726|ENST00000374358|TMEM50A;ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENSG00000183726|ENST00000374358|TMEM50A	ENSG00000183726|ENST00000374358|TMEM50A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.3201293945312	2	563.320786	1124.62702	0.21929	0.00012353	-0.76344	-0.00043006	-0.54415	-0.00030653	563.3199338488712	103.57	0.93773	103.45	103.02	103.96	-0.12723					33	21	3	0	0	0	0.88914	2	12884	12884;12896		54.765	20.592	1	130620			29461	9266	20296	20334	33938;33939	33938					0.06968978522195357
IVYPGIAVFF	10	Unmodified	_IVYPGIAVFF_					0	0	0		ENSG00000183726|ENST00000374358|TMEM50A;ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENSG00000183726|ENST00000374358|TMEM50A	ENSG00000183726|ENST00000374358|TMEM50A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.3212890625	2	563.320786	1124.62702	-0.26099	-0.00014702	-0.80299	-0.00045234	-1.064	-0.00059936	563.3199016547475	103.63	1.0996	103.5	102.96	104.06	-0.12783					42	26	3	0	0	0	0.88914	1	12895	12895		54.765	12.369	1	120270			29462	9266	20296	20334	33940	33940					0.06968978522195357
IVYPGIAVFF	10	Unmodified	_IVYPGIAVFF_					0	0	0		ENSG00000183726|ENST00000374358|TMEM50A;ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENSG00000183726|ENST00000374358|TMEM50A	ENSG00000183726|ENST00000374358|TMEM50A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.322021484375	2	563.320786	1124.62702	0.19019	0.00010714	-0.97138	-0.0005472	-0.78119	-0.00044006	563.3196736924358	103.68	0.86414	103.51	103.28	104.14	-0.16791					34	21	3	0	0	0	1.0111	1	12881	12881		44.531	6.7195	1	107470			29463	9266	20296	20334	33941	33941					0.06968978522195357
IVYVPTTS	8	Unmodified	_IVYVPTTS_					0	0	0		ENST00000369528.9_2_1:115314278-115314449:-|nuORF	ENST00000369528.9_2_1:115314278-115314449:-|nuORF	ENST00000369528.9_2_1:115314278-115314449:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.5302429199219	2	440.244744	878.474934	-0.08754	-3.8539E-05	-1.5661	-0.00068948	-1.6537	-0.00072802	440.24404451702765	19.635	0.14793	19.474	19.381	19.529	-0.16079					4	2	2	0	0	0	0.027866	1	445	445		28.254	17.389	1	11324			29464	12924	20297	20335	33942	33942					0.030835777746119675
IWALLPFA	8	Unmodified	_IWALLPFA_					0	0	0			REV__SLC7A13|p.S286L|1|0.25|ENSG00000164893|chr8:86217792-86217792|G/A|missense_variant	REV__SLC7A13|p.S286L|1|0.25|ENSG00000164893|chr8:86217792-86217792|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.77716064453125	2	465.776014	929.537475	0.30012	0.00013979	3.0384	0.0014152	3.3385	0.001555	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0574	1	9996	9996		24.504	0.30126	1	1281300	+		29465	37510	20298	20336	33943	33943					0.06988768633459586
IWASLLGKN	9	Unmodified	_IWASLLGKN_					0	0	0		ENSG00000172000|ENST00000307635|ZNF556	ENSG00000172000|ENST00000307635|ZNF556	ENSG00000172000|ENST00000307635|ZNF556	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.290283203125	2	501.292559	1000.57057	-0.25386	-0.00012726	-4.0451	-0.0020278	-4.2989	-0.002155	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.83071	1	10056	10056		37.159	4.3467	1	2648000			29466	8230	20299	20337	33944	33944					0.07030350685533904
IWCDIIVPLL	10	Carbamidomethyl (C)	_IWC(Carbamidomethyl (C))DIIVPLL_	IWC(1)DIIVPLL		IWC(64)DIIVPLL		0	1	0			REV__ENSG00000103066|ENST00000219345|PLA2G15	REV__ENSG00000103066|ENST00000219345|PLA2G15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.57196044921875	3	414.570265	1240.68897	-0.36831	-0.00015269	3.6992	0.0015336	3.3309	0.0013809	414.571751729385	40.601	1.2488	40.624	40.349	41.597	0.023006					103	35	4	0	0	0	0.74632	1	3529	3529		64.207	12.04	1	5011800	+		29467	21353	20300	20338	33945	33945	273				0.07824961879009606
IWCDIIVPLL	10	Carbamidomethyl (C)	_IWC(Carbamidomethyl (C))DIIVPLL_					0	1	0			REV__ENSG00000103066|ENST00000219345|PLA2G15	REV__ENSG00000103066|ENST00000219345|PLA2G15	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	414.570265	1240.68897	0.91864	0.00038084	2.9412	0.0012193	3.8598	0.0016002	414.5714359908195	40.376	1.0203	40.376	40.099	41.119	0	-0.10202	-9.3655E-06	NaN	64.207	99	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6960800	+		29468	21353	20300	20338			273				0.07824961879009606
IWCDIIVPLL	10	Carbamidomethyl (C)	_IWC(Carbamidomethyl (C))DIIVPLL_					0	1	0			REV__ENSG00000103066|ENST00000219345|PLA2G15	REV__ENSG00000103066|ENST00000219345|PLA2G15	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	414.570265	1240.68897	1.0513	0.00043583	2.7706	0.0011486	3.8219	0.0015844	414.5713530779095	40.545	1.1718	40.433	40.134	41.305	-0.11223	-0.044494	-0.0002215	NaN	64.207	100	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4742800	+		29469	21353	20300	20338			273				0.07824961879009606
IWCDIIVPLL	10	Carbamidomethyl (C)	_IWC(Carbamidomethyl (C))DIIVPLL_					0	1	0			REV__ENSG00000103066|ENST00000219345|PLA2G15	REV__ENSG00000103066|ENST00000219345|PLA2G15	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	414.570265	1240.68897	-0.36831	-0.00015269	3.6992	0.0015336	3.3309	0.0013809	414.571751729385	40.601	1.2488	40.624	40.349	41.597	0.023006	0.14651	0.00093345	NaN	64.207	103	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5011800	+		29470	21353	20300	20338			273				0.07824961879009606
IWCVLALI	8	Unmodified	_IWCVLALI_					0	0	0			REV__chr19:46124321-46124625|359|38.47|0.99|5.29|-|2|IGFL3,IGFL3|1	REV__chr19:46124321-46124625|359|38.47|0.99|5.29|-|2|IGFL3,IGFL3|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7775573730469	2	465.777699	929.540846	-0.64033	-0.00029825	0.37704	0.00017562	-0.26329	-0.00012263	465.7778115254298	80.676	2.2634	80.676	79.077	81.341	0					120	54	3	0	0	0	1.0241	1	10007	10007		33.493	1.9632	1	1014200	+		29471	19396	20301	20339	33946	33946					0.07325695415806877
IWERVLILPFF	11	Unmodified	_IWERVLILPFF_					0	0	0			REV__ENST00000450162.6_1_2:70131458-70131730:+|nuORF	REV__ENST00000450162.6_1_2:70131458-70131730:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.61944580078125	3	478.283224	1431.82784	4.6788	0.0022378	-2.8895	-0.001382	1.7893	0.00085579	478.28185163439673	18.035	0.30546	18.095	17.952	18.258	0.06036					10	6	2	0	0	0	1.1135	1	205	205		6.3209	0.31984	1	17140	+		29472	32693	20302	20340	33947	33947					0.12920247838837895
IWERVLILPFF	11	Unmodified	_IWERVLILPFF_					0	0	0			REV__ENST00000450162.6_1_2:70131458-70131730:+|nuORF	REV__ENST00000450162.6_1_2:70131458-70131730:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.61944580078125	3	478.283224	1431.82784	4.6788	0.0022378	-2.8895	-0.001382	1.7893	0.00085579	478.28185163439673	18.035	0.30546	18.095	17.952	18.258	0.06036					10	6	2	0	0	0	0.024896	1	205	205		6.3209	0.31984	1	17140	+		29473	32693	20302	20340	33948	33948					0.12920247838837895
IWFAASLFD	9	Unmodified	_IWFAASLFD_					0	0	0			REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2710571289062	2	535.271293	1068.52803	-0.13455	-7.2022E-05	3.4418	0.0018423	3.3073	0.0017703	535.2727419137408	104.13	0.77702	103.96	103.4	104.17	-0.16791					33	19	4	0	0	0	0.70186	1	12945	12945		45.952	5.3793	1	362370	+		29474	29069	20303	20341	33949	33949					-0.003490444427143302
IWFLVPIS	8	Unmodified	_IWFLVPIS_					0	0	0		ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7906799316406	2	487.789121	973.56369	0.37956	0.00018514	2.6849	0.0013097	3.0645	0.0014948	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.0133	1	10148	10148		35.201	0	1	2659000			29475	7115	20304	20342	33950	33950					0.0758503780494948
IWGKFVLY	8	Unmodified	_IWGKFVLY_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;LPCAT3|p.Q363Sfs*87|1|0.1|ENSG00000111684|chr12:6977700-6977701|-/G|frameshift_variant	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.2925415039062	2	513.294571	1024.57459	-0.49163	-0.00025235	-3.4783	-0.0017854	-3.97	-0.0020378	513.2926384674303	65.229	0.69116	64.995	64.687	65.379	-0.2345					44	16	4	0	0	0	0.95417	1	7439	7439		44.531	5.7249	1	1372600			29476	3137	20305	20343	33951	33951					0.0632844017923162
IWGLPFCIN	9	Unmodified	_IWGLPFCIN_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.81689453125	2	531.775688	1061.53682	-0.0028497	-1.5154E-06	-3.864	-0.0020548	-3.8668	-0.0020563	532.274345345146	86.902	0.12364	86.923	86.844	86.968	0.021263					4	2	2	0	0	0	0.024466	1	10853	10853		33.516	13.034	1	25901			29477	10369	20306	20344	33952	33952					0.008516059221165051
IWIAPNLLV	9	Unmodified	_IWIAPNLLV_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8191528320312	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.673	1	71.683	71.183	72.183	0.010735								0	0	0	0.56309	1	8619	8619		44.531	0.41427	1		+		29478	28437	20307	20345	33953	33953					0.11004398242016578
IWKLNLQT	8	Unmodified	_IWKLNLQT_					0	0	0		ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3023986816406	2	508.300384	1014.58622	-0.35052	-0.00017817	3.5065	0.0017824	3.156	0.0016042	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.74904	1	6255	6255		63.306	7.8021	1	8370900			29479	4303	20308	20346	33954	33954					0.07950637202554844
IWKNLLTQ	8	Unmodified	_IWKNLLTQ_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.30206298828125	2	508.300384	1014.58622	-0.88652	-0.00045062	3.9722	0.0020191	3.0857	0.0015685	508.3023500786697	55.676	1.7745	55.774	54.66	56.435	0.098015					108	39	3	0	0	0	0.50239	1	6145	6145		85.359	0	1	9000800	+		29480	36819	20309	20347	33955	33955					0.07950637202554844
IWKVRLPRLVH	11	Unmodified	_IWKVRLPRLVH_					0	0	0			REV__SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|51|3|sense	REV__SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|51|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.97174072265625	3	472.969863	1415.88776	-0.21442	-0.00010141	2.5765	0.0012186	2.362	0.0011172	472.9710650802329	49.088	1.4052	48.987	48.726	50.131	-0.1008					127	36	6	0	0	0	1.09	1	4924	4924		14.086	0.57807	1	6827200	+		29481	37622	20310	20348	33956	33956					0.19644983292732832
IWLFTRLN	8	Unmodified	_IWLFTRLN_					0	0	0			REV__ENST00000446716.5_1_2:220075515-220081188:-|nuORF	REV__ENST00000446716.5_1_2:220075515-220081188:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3153686523438	2	531.808377	1061.6022	-0.62028	-0.00032987	-0.41563	-0.00022103	-1.0359	-0.0005509	532.3102071738202	97.714	0.267	97.714	97.504	97.771	0					7	5	2	0	0	0	0.027866	1	12446	12446		44.117	0	1	49140	+		29482	22222	20311	20349	33957	33957					0.0738634343947524
IWLMALAL	8	Unmodified	_IWLMALAL_					0	0	0			REV__ENSG00000164893|ENST00000297524|SLC7A13	REV__ENSG00000164893|ENST00000297524|SLC7A13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7774353027344	2	465.777699	929.540846	-0.64033	-0.00029825	0.37704	0.00017562	-0.26329	-0.00012263	465.7778115254298	80.676	2.2634	80.676	79.077	81.341	0					120	54	3	0	0	0	1.0241	1	10030	10030		33.493	5.6107	1	1014200	+		29483	25814	20312	20350	33958	33958					0.07325695415806877
IWLRKLSRIT	10	Unmodified	_IWLRKLSRIT_					0	0	0			REV__ENST00000263377.6_1_19:15379807-15383627:-|nuORF	REV__ENST00000263377.6_1_19:15379807-15383627:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	643.4021606445312	2	643.408789	1284.80303	0.9058	0.0005828	-4.1544	-0.002673	-3.2486	-0.0020902	643.4061591945805	104.35	0.53953	104.35	104.03	104.57	0					35	12	4	0	0	0	1.0236	1	13401	13401		42.864	13.694	1	496070	+		29484	29687	20313	20351	33959	33959					0.17201612756116447
IWQLSSSL	8	Unmodified	_IWQLSSSL_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2536926269531	2	467.255643	932.496732	-0.33778	-0.00015783	-4.3263	-0.0020215	-4.664	-0.0021793	467.25358777044187	34.277	1.1965	34.277	33.932	35.129	0					77	30	4	0	0	0	0.44658	1	2551	2551		90.777	3.0224	1	3569600			29485	3679	20314	20352	33960	33960					0.027783825231949777
IWRKVTGE	8	Unmodified	_IWRKVTGE_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2845458984375	2	494.782359	987.550165	0.34262	0.00016952	0.28703	0.00014202	0.62965	0.00031154	494.7820902295903	50.141	0.85638	49.96	49.57	50.426	-0.18071					70	22	5	0	0	0	0.94517	1	5053	5053		45.952	1.8352	1	4320300	+		29486	23875	20315	20353	33961	33961					0.05589180025708629
IWRRFRQELLW	11	Unmodified	_IWRRFRQELLW_					0	0	0			REV__ENST00000448729.6_1_10:81813332-81820672:-|nuORF	REV__ENST00000448729.6_1_10:81813332-81820672:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.78466796875	3	534.972043	1601.8943	-0.47748	-0.00025544	4.4858	0.0023998	4.0083	0.0021444	535.3090273229029	55.734	0.7461	55.518	55.174	55.92	-0.21607					45	20	3	0	0	0	0.024873	1	6048	6048		14.086	8.3872	1	388810	+		29487	32659	20316	20354	33962	33962					0.11742876453445206
IYAKNKTL	8	Unmodified	_IYAKNKTL_					0	0	0			REV__ENST00000462139.1_1_1:247462914-247463100:-|nuORF	REV__ENST00000462139.1_1_1:247462914-247463100:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.7867736816406	2	475.78711	949.559667	1.7375	0.0008267	-1.2866	-0.00061216	0.45092	0.00021454	475.78627125143373	85.849	0.88593	85.849	85.457	86.343	0					30	20	2	0	0	0	0.97924	1	10788	10788		40.573	1.7665	1	601390	+		29488	32894	20317	20355	33963	33963					0.08286948311229025
IYALTITG	8	Unmodified	_IYALTITG_					0	0	0		ENSG00000258453|ENST00000556246|OR11H2;nc|ENSG00000258453|Q8NH07|OR11H2	ENSG00000258453|ENST00000556246|OR11H2	ENSG00000258453|ENST00000556246|OR11H2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2462158203125	2	426.247286	850.48002	0.26941	0.00011483	-3.1272	-0.001333	-2.8578	-0.0012181	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	0.96719	1	10625	10625		42.474	0	1	14269000			29489	10928	20318	20356	33964	33964					0.048798816372254805
IYASGAPRGR	10	Unmodified	_IYASGAPRGR_					0	0	0		ENST00000331163.10_1_22:39631853-39640539:-|nuORF	ENST00000331163.10_1_22:39631853-39640539:-|nuORF	ENST00000331163.10_1_22:39631853-39640539:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2869873046875	2	524.28834	1046.56213	-0.2719	-0.00014256	-0.84239	-0.00044165	-1.1143	-0.00058421	524.2881088611321	28.184	1.053	28.265	27.646	28.699	0.080811					61	25	5	0	0	0	1.0122	1	1564	1564		44.377	0.26039	1	3275100			29490	12339	20319	20357	33965	33965					0.04070796768905893
IYAWLLCP	8	Unmodified	_IYAWLLCP_					0	0	0		ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.27703857421875	2	489.759507	977.50446	-0.00241	-1.1803E-06	1.7375	0.00085094	1.7351	0.00084976	489.76025342565845	76.473	0.367	76.485	76.244	76.611	0.011642					14	8	2	0	0	0	0.027866	1	9357	9357		24.504	1.4615	1	108660			29491	16240	20320	20358	33966	33966					0.014808185190986478
IYCPDVSNVY	10	Unmodified	_IYCPDVSNVY_					0	0	0		ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.76953125	2	586.768257	1171.52196	-0.56684	-0.0003326	4.3384	0.0025456	3.7715	0.002213	586.7705248740365	73.756	0.40582	73.566	73.316	73.722	-0.19026					23	9	3	0	0	0	1.0122	1	8670	8670		44.377	0.26039	1	1387000			29492	3082	20321	20359	33967	33967					-0.056939307365382774
IYDLFEFIA	9	Unmodified	_IYDLFEFIA_					0	0	0			REV__MAP2K1|p.L313F|1|0.2|ENSG00000169032|chr15:66487271-66487271|G/T|missense_variant	REV__MAP2K1|p.L313F|1|0.2|ENSG00000169032|chr15:66487271-66487271|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.79150390625	2	565.792058	1129.56956	0.0084761	4.7957E-06	0.34506	0.00019523	0.35354	0.00020003	565.7921525897394	100.52	0.51163	100.35	100.12	100.63	-0.17088					33	14	3	0	0	0	0.70186	1	12458	12458		45.952	5.1738	1	658070	+		29493	36349	20322	20360	33968	33968					0.009960915259625835
IYDRGQTARA	10	Unmodified	_IYDRGQTARA_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8046875	2	575.801811	1149.58907	-0.47416	-0.00027302	2.3561	0.0013567	1.882	0.0010836	575.8030562095723	70.671	0.89393	70.683	70.347	71.24	0.012421					60	21	4	0	0	0	0.98527	1	8475	8475		47.96	5.0953	1	1910700	+		29494	25715	20323	20361	33969	33969					0.020258605894241555
IYDSKKCCY	9	Carbamidomethyl (C)	_IYDSKKCC(Carbamidomethyl (C))Y_	IYDSKKC(0.084)C(0.916)Y		IYDSKKC(-10)C(10)Y		0	1	0		ENSG00000205592|ENST00000454784|MUC19	ENSG00000205592|ENST00000454784|MUC19	ENSG00000205592|ENST00000454784|MUC19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.2640991210938	2	590.262284	1178.51002	-0.42876	-0.00025308	3.3246	0.0019624	2.8958	0.0017093	590.2640275090032	53.223	0.79395	52.965	52.683	53.477	-0.25838					62	20	5	0	0	0	0.2508	1	5544	5544		82.241	9.3613	2	2599900			29495	10435	20324	20362	33970	33970	148				-0.07209870751398739
IYDSNCVVLSM	11	Oxidation (M)	_IYDSNCVVLSM(Oxidation (M))_		IYDSNCVVLSM(1)		IYDSNCVVLSM(67)	0	0	1		FARSB|p.G228C|1|0.28|ENSG00000116120|chr2:222633232-222633232|C/A|missense_variant	FARSB|p.G228C|1|0.28|ENSG00000116120|chr2:222633232-222633232|C/A|missense_variant	FARSB|p.G228C|1|0.28|ENSG00000116120|chr2:222633232-222633232|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	630.2866821289062	2	630.285956	1258.55736	-0.35794	-0.0002256	0.14034	8.8452E-05	-0.2176	-0.00013715	630.2859238972002	74.408	1.0546	74.145	73.889	74.944	-0.26326					55	24	4	0	0	0	0.63824	1	8799	8799		67.494	7.3754	1	1944300			29496	17637	20325	20363	33971	33971		559			-0.06157636271063893
IYDVKAGTPT	10	Unmodified	_IYDVKAGTPT_					0	0	0			REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D	REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3048706054688	2	532.784764	1063.55498	-1.2564	-0.00066937	0.61998	0.00033031	-0.63638	-0.00033906	532.7851623718849	62.9	0.60931	62.66	62.451	63.06	-0.23926					23	14	2	0	0	0	0.03519	1	7359	7359		36.447	13.867	1	618540	+		29497	23794	20326	20364	33972	33972					0.025740193777892273
IYDVWIQY	8	Unmodified	_IYDVWIQY_					0	0	0			REV__ENSG00000176102|ENST00000323959|CSTF3	REV__ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2581787109375	2	550.276575	1098.5386	-0.24159	-0.00013294	2.2855	0.0012577	2.0439	0.0011247	550.2786957322552	63.759	0.97113	63.531	63.095	64.066	-0.22773					37	24	2	0	0	0	0.027866	1	7221	7221		45.952	23.992	1	306150	+		29498	26995	20327	20365	33973	33973					-0.0067306178827948315
IYELVEEP	8	Unmodified	_IYELVEEP_					0	0	0			REV__ENST00000478089.1_1_1:16621266-16641853:-|nuORF	REV__ENST00000478089.1_1_1:16621266-16641853:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.7520751953125	2	496.252766	990.490978	0.22564	0.00011197	-3.323	-0.0016491	-3.0974	-0.0015371	496.2510183249915	76.962	0.95641	76.975	76.49	77.447	0.013504					34	22	2	0	0	0	0.95417	1	9416	9416		44.531	5.7249	1	587220	+		29499	20070	20328	20366	33974	33974					-0.004647607791412156
IYEQLKNI	8	Unmodified	_IYEQLKNI_					0	0	0		ENSG00000151461|ENST00000357604|UPF2;UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant;UPF2|p.T763Nfs*23|1|0.15|ENSG00000151461|chr10:11959253-11959254|-/T|frameshift_variant	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7891540527344	2	510.78985	1019.56515	0.92905	0.00047455	-1.4783	-0.00075512	-0.54929	-0.00028057	510.78911698853955	82.261	2.224	82.151	81.482	83.706	-0.11006					136	52	3	0	0	0	0.53523	1	10325	10325		82.305	0	1	19375000			29500	6202	20329	20367	33975	33975					0.056146271030456774
IYEQVGPMRL	10	Unmodified	_IYEQVGPMRL_					0	0	0			REV__ENSG00000134262|ENST00000369569|AP4B1	REV__ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5513916015625	3	402.549753	1204.62743	1.4397	0.00057954	2.2392	0.0009014	3.6789	0.0014809	402.5506780523661	23.38	0.80973	23.189	22.851	23.66	-0.19117					52	18	4	0	0	0	1.0344	1	900	900		41.427	0	1	3524000	+		29501	23432	20330	20368	33976	33976					0.03330030179745336
IYFETEFQS	9	Unmodified	_IYFETEFQS_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.8238525390625	2	582.266404	1162.51826	-0.20121	-0.00011716	0.49192	0.00028643	0.29071	0.00016927	582.2665458496878	78.036	0.65862	78.052	77.739	78.397	0.015907					20	15	2	0	0	0	0.024523	1	9607	9607		15.642	0	1	161870	+		29502	19842	20331	20369	33977	33977					-0.05650277238760282
IYFIACTVTL	10	Unmodified	_IYFIACTVTL_					0	0	0		ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.8124389648438	2	572.309561	1142.60457	-0.48405	-0.00027703	-2.5545	-0.001462	-3.0386	-0.001739	572.3078343436534	105.18	1.775	105.18	104.07	105.85	0					75	49	3	0	0	0	1.089	1	13540	13540		34.173	1.3601	1	467390			29503	17020	20332	20370	33978	33978					0.03897011062258571
IYGGFHMMN	9	Unmodified	_IYGGFHMMN_					0	0	0			REV__nc|ENSG00000118194|P45379-12|TNNT2	REV__nc|ENSG00000118194|P45379-12|TNNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2351684570312	2	535.23333	1068.45211	-0.3966	-0.00021227	-1.9895	-0.0010648	-2.3861	-0.0012771	535.2317951047597	58.276	0.33709	58.367	58.224	58.561	0.091217					13	8	2	0	0	0	0.024517	1	6530	6530		35.201	15.841	1	102420	+		29504	22392	20333	20371	33979	33979					-0.07938087886145695
IYGHYRRF	8	Unmodified	_IYGHYRRF_					0	0	0			REV__ENSG00000049860|ENST00000261416|HEXB	REV__ENSG00000049860|ENST00000261416|HEXB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.3250732421875	2	556.293425	1110.5723	2.2682	0.0012618	0.18567	0.00010328	2.4539	0.0013651	556.2934249022492	19.741	0.52813	19.807	19.637	20.165	0.066195					14	10	2	0	0	0	0.027866	1	397	397		26.796	2.5934	1	27953	+		29505	20151	20334	20372	33980	33980					0.021434044941315733
IYGHYRRF	8	Unmodified	_IYGHYRRF_					0	0	0			REV__ENSG00000049860|ENST00000261416|HEXB	REV__ENSG00000049860|ENST00000261416|HEXB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.293425	1110.5723	0.6217	0.00034585	4.4177	0.0024575	5.0394	0.0028034	556.2953321568806	19.561	0.36765	19.561	19.414	19.782	0	-0.12308	0.0023463	NaN	26.796	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28872	+		29506	20151	20334	20372							0.021434044941315733
IYGKLPLIS	9	Unmodified	_IYGKLPLIS_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2671813964844	2	502.312961	1002.61137	0.14567	7.317E-05	-0.19909	-0.00010001	-0.053424	-2.6835E-05	502.3125551868088	71.276	0.53123	71.287	71.013	71.544	0.010735					21	13	2	0	0	0	0.024323	1	8574	8574		35.618	6.4687	1	347270			29507	10074	20335	20373	33981	33981					0.11016692005136974
IYGLARSVLK	10	Unmodified	_IYGLARSVLK_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3517456054688	2	560.347866	1118.68118	-0.18989	-0.0001064	3.1646	0.0017733	2.9747	0.0016669	560.3495502471608	105.99	0.56302	105.99	105.7	106.27	-0.0013123					45	19	3	0	0	0	1.0616	1	13548	13548		37.812	4.9991	1	423880	+		29508	26836	20336	20374	33982	33982					0.12658570673738723
IYGLARSVLK	10	Unmodified	_IYGLARSVLK_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3502807617188	2	560.347866	1118.68118	-0.034242	-1.9187E-05	2.7243	0.0015265	2.69	0.0015073	560.3494057075354	106.07	0.48589	106.07	105.81	106.3	0.00014496					46	18	3	0	0	0	1.0781	1	13542	13542		35.618	1.4457	1	450830	+		29509	26836	20336	20374	33983	33983					0.12658570673738723
IYGSRQIIL	9	Unmodified	_IYGSRQIIL_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8193969726562	2	531.818941	1061.62333	1.3553	0.00072076	2.3037	0.0012251	3.659	0.0019459	531.8197304179866	16.817	0.8735	16.663	16.485	17.358	-0.15376					30	17	3	0	0	0	0.85329	1	102	102		35.618	2.8059	1	157580			29510	9870	20337	20375	33984	33984					0.09498308748334239
IYGTPVAREL	10	Unmodified	_IYGTPVAREL_					0	0	0			REV__nc|ENSG00000289716|Q6ZNB5-2|XNDC1N	REV__nc|ENSG00000289716|Q6ZNB5-2|XNDC1N	MSMS	OPSCC_40_ClassI_Rep-3	6	559.8137817382812	2	559.813856	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.006	1	82.868	82.368	83.368	-0.1386								0	0	0	0.39651	1	9998	9998		71.877	5.4482	1		+		29511	29054	20338	20376	33985	33985					0.05905701023084475
IYHILGKV	8	Unmodified	_IYHILGKV_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2817687988281	2	471.792195	941.569838	0.073501	3.4677E-05	0.36329	0.0001714	0.43679	0.00020608	471.7910399407067	47.283	0.26945	47.186	47.008	47.278	-0.096653					9	6	2	0	0	0	0.027866	1	4607	4607		21.702	0	1	43556			29512	1881	20339	20377	33986	33986					0.09671556036482798
IYHNITGISV	10	Unmodified	_IYHNITGISV_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.7389526367188	2	558.806031	1115.59751	-0.85102	-0.00047555	0.98375	0.00054973	0.13274	7.4175E-05	558.8060977885287	61.363	0.96275	61.105	60.501	61.464	-0.25725					49	23	3	0	0	0	0.03519	1	6845	6845		45.972	11.8	1	772680			29513	1112;18045	20340	20378	33987	33987					0.044334145060247465
IYIFDPKI	8	Unmodified	_IYIFDPKI_					0	0	0			REV__ENST00000482587.5_3_1:179833021-179833192:-|nuORF	REV__ENST00000482587.5_3_1:179833021-179833192:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.78961181640625	2	504.791861	1007.56917	-0.68435	-0.00034545	-3.863	-0.00195	-4.5474	-0.0022955	504.7898056130017	28.294	0.68513	28.142	27.885	28.57	-0.15195					47	16	4	0	0	0	0.47665	1	1618	1618		87.754	2.3948	1	2206500	+		29514	33486	20341	20379	33988	33988					0.06568716596746071
IYIILFKP	8	Unmodified	_IYIILFKP_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7869567871094	2	503.820421	1005.62629	-0.035048	-1.7658E-05	-3.1565	-0.0015903	-3.1915	-0.0016079	503.8193063228823	37.643	0.3898	37.45	37.19	37.58	-0.193					14	9	2	0	0	0	0.027866	1	3018	3018		29.842	0	1	164980			29515	1044	20342	20380	33989	33989					0.12370183873122187
IYIKFYEN	8	Unmodified	_IYIKFYEN_					0	0	0			REV__nc|ENSG00000114423|Q13191-2|CBLB	REV__nc|ENSG00000114423|Q13191-2|CBLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3250122070312	2	545.2844	1088.55425	-0.41399	-0.00022574	3.6544	0.0019927	3.2404	0.0017669	545.2853494838407	68.119	0.23288	68.138	68.004	68.237	0.018913					6	5	2	0	0	0	0.027866	1	8061	8061		57.811	16.385	1	135390	+		29516	22121	20343	20381	33990	33990					0.013512247287508217
IYILEVIRD	9	Unmodified	_IYILEVIRD_					0	0	0			REV__ENSG00000152127|ENST00000281923|MGAT5	REV__ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3309326171875	2	567.331882	1132.64921	-0.94755	-0.00053757	-2.7415	-0.0015554	-3.6891	-0.0020929	567.33021605975	93.846	1.1071	93.706	93.353	94.46	-0.13995					91	25	5	0	0	0	0.96906	1	11567	11567		26.693	2.1737	1	1125700	+		29517	24817	20344	20382	33991	33991					0.0881915819995811
IYIPDSVTL	9	Unmodified	_IYIPDSVTL_					0	0	0			REV__nc|ENSG00000155463|Q15070-2|OXA1L	REV__nc|ENSG00000155463|Q15070-2|OXA1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7857971191406	2	510.784233	1019.55391	0.051056	2.6079E-05	-4.1939	-0.0021422	-4.1428	-0.0021161	510.7832249645329	86.992	1.6165	86.992	86.386	88.003	0					78	38	5	0	0	0	0.55828	1	10973	10973		55.504	2.1528	1	890020	+		29518	25007	20345	20383	33992	33992					0.04491805008922256
IYIQNKYV	8	Unmodified	_IYIQNKYV_					0	0	0			REV__ENSG00000135905|ENST00000258390|DOCK10	REV__ENSG00000135905|ENST00000258390|DOCK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2588500976562	2	520.792392	1039.57023	-0.75971	-0.00039565	2.5899	0.0013488	1.8302	0.00095315	521.2945505314912	85.257	0.74762	85.283	84.747	85.494	0.025536					29	17	2	0	0	0	0.027866	1	10614	10614		46.766	13.251	1	80744	+		29519	23592	20346	20384	33993	33993					0.05202930965651831
IYIYTHTQ	8	Unmodified	_IYIYTHTQ_					0	0	0		ENST00000396987.7_1_8:41480416-41480683:+|nuORF	ENST00000396987.7_1_8:41480416-41480683:+|nuORF	ENST00000396987.7_1_8:41480416-41480683:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8206787109375	2	519.766374	1037.5182	-1.0348	-0.00053787	3.6968	0.0019215	2.662	0.0013836	519.7690865748164	80.889	0.36211	80.737	80.514	80.876	-0.15169					10	7	2	0	0	0	0.027866	1	10041	10041		92.191	0	1	421150			29520	13572	20347	20385	33994	33994					0.0009376755190260155
IYKFDASV	8	Unmodified	_IYKFDASV_					0	0	0			REV__ENST00000238961.8_1_10:102690801-102697226:+|nuORF	REV__ENST00000238961.8_1_10:102690801-102697226:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.75494384765625	2	471.750193	941.485833	-0.62147	-0.00029318	-3.7903	-0.0017881	-4.4117	-0.0020812	471.7484035300125	37.768	0.5143	37.768	37.523	38.037	0					23	14	2	0	0	0	0.027866	1	3092	3092		24.203	5.0992	1	439950	+		29521	29444	20348	20386	33995	33995					0.01274980148900795
IYKKQVIIN	9	Unmodified	_IYKKQVIIN_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.8157958984375	2	559.850242	1117.68593	0.28786	0.00016116	-0.30735	-0.00017207	-0.019492	-1.0913E-05	559.8502636877769	80.736	0.12026	80.529	80.467	80.587	-0.20633					4	2	2	0	0	0	0.024535	1	9694	9694		25.45	0	1	39215			29522	10214	20349	20387	33996	33996					0.13179454816531688
IYKLSKGH	8	Unmodified	_IYKLSKGH_					0	0	0			REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.2793273925781	2	473.279452	944.544351	-0.035156	-1.6639E-05	-0.027047	-1.2801E-05	-0.062203	-2.9439E-05	473.27927515504336	55.107	0.90251	54.876	54.53	55.432	-0.23087					60	25	3	0	0	0	0.78609	1	5905	5905		60.294	2.4827	1	3141500	+		29523	20880	20350	20388	33997	33997					0.06986081514037323
IYKNLSTLKA	10	Unmodified	_IYKNLSTLKA_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8428955078125	2	575.845156	1149.67576	-0.82546	-0.00047534	-2.9075	-0.0016743	-3.7329	-0.0021496	575.8433114529906	88.92	2.4021	88.92	87.573	89.975	0					191	57	4	0	0	0	1.118	1	11279	11279		30.318	1.1477	1	1520800	+		29524	26756	20351	20389	33998	33998					0.10690847091291289
IYKPNQTNP	9	Unmodified	_IYKPNQTNP_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3049926757812	2	537.782556	1073.55056	-0.51243	-0.00027557	-0.60795	-0.00032694	-1.1204	-0.00060252	537.7842308912393	86.453	1.0423	86.316	85.745	86.787	-0.13734					53	23	4	0	0	0	0.024319	1	10406	10406		47.657	8.4045	1	147410	+		29525	28299	20352	20390	33999	33999					0.01672554954870975
IYKRSELL	8	Unmodified	_IYKRSELL_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2878723144531	2	511.305667	1020.59678	0.10515	5.3761E-05	3.9802	0.0020351	4.0853	0.0020889	511.30734043750675	56.572	0.62931	56.347	56.109	56.738	-0.2248					35	15	3	0	0	0	0.027866	1	6097	6097		37.159	15.457	1	332070	+		29526	20421	20353	20391	34000	34000					0.08730619856999056
IYKTHLENNRF	11	Unmodified	_IYKTHLENNRF_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000451892.1_1_1:240307519-240307882:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8970947265625	3	478.921126	1433.74155	-0.17396	-8.3315E-05	-0.51521	-0.00024675	-0.68917	-0.00033006	478.92099421896785	32.142	0.87446	31.985	31.609	32.484	-0.15772					34	20	3	0	0	0	0.024801	1	2178	2178		23.378	5.5448	1	257850			29527	8534	20354	20392	34001	34001					0.04202636266177251
IYKTHLENNRF	11	Unmodified	_IYKTHLENNRF_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000451892.1_1_1:240307519-240307882:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	478.921126	1433.74155	0.41728	0.00019984	-0.8465	-0.00040541	-0.42922	-0.00020556	478.92070518598115	32.232	0.43367	31.995	31.782	32.216	-0.23667	-0.032118	-0.00027483	NaN	23.378	35	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274810			29528	8534	20354	20392							0.04202636266177251
IYKTHLENNRF	11	Unmodified	_IYKTHLENNRF_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000451892.1_1_1:240307519-240307882:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	478.921126	1433.74155	0.27901	0.00013362	-0.5837	-0.00027955	-0.3047	-0.00014593	479.25522880637925	32.294	0.5211	32.102	31.856	32.377	-0.19261	0.074438	0.00010274	NaN	23.378	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223560			29529	8534	20354	20392							0.04202636266177251
IYKTLGGEK	9	Unmodified	_IYKTLGGEK_					0	0	0		nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7897033691406	2	504.78985	1007.56515	-0.91532	-0.00046205	0.23173	0.00011697	-0.68359	-0.00034507	504.7898656159052	28.384	0.73597	28.139	27.842	28.578	-0.24524					45	17	4	0	0	0	0.20967	1	1664	1664		87.754	8.3033	1	1975300			29530	6579	20355	20393	34002	34002					0.06166627103061728
IYKTLGGEK	9	Unmodified	_IYKTLGGEK_					0	0	0		nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7892150878906	2	504.78985	1007.56515	-0.68435	-0.00034545	0.12155	6.1358E-05	-0.5628	-0.00028409	504.7898056130017	28.294	0.68513	28.142	27.885	28.57	-0.15195					47	16	4	0	0	0	0.12602	1	1607	1607		104.75	16.104	1	2206500			29531	6579	20355	20393	34003	34003					0.06166627103061728
IYKTLGGEK	9	Unmodified	_IYKTLGGEK_					0	0	0		nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.78985	1007.56515	-0.59997	-0.00030286	-1.4594	-0.0007367	-2.0594	-0.0010396	504.78802273366824	28.208	0.16882	28.204	28.117	28.286	-0.0042	0.076253	-0.0016885	NaN	104.75	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25588			29532	6579	20355	20393							0.06166627103061728
IYLAGSSIKG	10	Unmodified	_IYLAGSSIKG_					0	0	0		ENSG00000205784|ENST00000650722|ARRDC5;nc|ENSG00000205784|A6NEK1|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.78955078125	2	504.78985	1007.56515	-0.91532	-0.00046205	0.23173	0.00011697	-0.68359	-0.00034507	504.7898656159052	28.384	0.73597	28.139	27.842	28.578	-0.24524					45	17	4	0	0	0	0.50466	1	1638	1638		87.754	13.499	1	1975300			29533	10446	20356	20394	34004	34004					0.06166627103061728
IYLFKISL	8	Unmodified	_IYLFKISL_					0	0	0		ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.25567626953125	2	498.810054	995.605554	0.20169	0.0001006	-4.3718	-0.0021807	-4.1701	-0.0020801	498.80784640213835	71.746	0.76433	71.484	71.2	71.964	-0.26199					31	18	2	0	0	0	0.027866	1	8414	8414		55.504	7.5886	1	157480			29534	17477	20357	20395	34005	34005					0.10757593493462991
IYLGKRELT	9	Unmodified	_IYLGKRELT_					0	0	0			REV__ENSG00000152785|ENST00000282701|BMP3	REV__ENSG00000152785|ENST00000282701|BMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.8241577148438	2	546.824224	1091.63389	-0.7284	-0.00039831	0.14972	8.1869E-05	-0.57869	-0.00031644	546.8241898510146	41.594	0.7166	41.364	41.08	41.797	-0.2303					51	18	4	0	0	0	0.33245	1	3672	3672		71.296	4.8664	1	2191300	+		29535	24865	20358	20396	34006	34006					0.09174291402746348
IYLHGQLVKLP	11	Unmodified	_IYLHGQLVKLP_					0	0	0			REV__ENST00000394634.6_2_4:110687906-110723179:-|nuORF	REV__ENST00000394634.6_2_4:110687906-110723179:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.8908081054688	2	640.889898	1279.76524	0.32967	0.00021128	-0.13048	-8.3621E-05	0.19919	0.00012766	640.8897075718224	80.113	1.1476	80.113	79.87	81.017	0					60	27	3	0	0	0	0.81602	1	9941	9941		56.721	3.6321	1	1246800	+		29536	31672	20359	20397	34007	34007					0.13655101770655165
IYLIQLGPAT	10	Unmodified	_IYLIQLGPAT_					0	0	0			REV__ENST00000373095.5_1_9:130703123-130703396:-|nuORF	REV__ENST00000373095.5_1_9:130703123-130703396:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8314819335938	2	544.82115	1087.62775	0.10777	5.8716E-05	0.29088	0.00015848	0.39865	0.0002172	544.8210094220208	71.376	0.65562	71.17	70.921	71.577	-0.20613					41	15	4	0	0	0	0.03519	1	8326	8326		19.104	0	1	659220	+		29537	31234	20360	20398	34008	34008					0.08743773171227076
IYLKSTQGPI	10	Unmodified	_IYLKSTQGPI_					0	0	0		ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.27978515625	2	560.324057	1118.63356	-0.76955	-0.0004312	-0.53168	-0.00029791	-1.3012	-0.00072911	560.3234350854821	85.456	0.33531	85.482	85.2	85.536	0.025528					12	7	2	0	0	0	0.03519	1	10625	10625		42.396	23.036	1	54391			29538	830	20361	20399	34009	34009					0.07898871682891695
IYLLESSTL	9	Unmodified	_IYLLESSTL_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7898559570312	2	519.789515	1037.56448	-1.1612	-0.00060359	0.69415	0.00036081	-0.46706	-0.00024277	519.7897718390615	80.264	0.99884	80.112	79.8	80.799	-0.15168					54	23	3	0	0	0	0.52323	1	9928	9928		57.811	4.4598	1	4966300	+		29539	21700	20362	20400	34010	34010					0.04719787663339048
IYLLESSTL	9	Unmodified	_IYLLESSTL_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7900390625	2	519.789515	1037.56448	-0.85927	-0.00044664	0.70244	0.00036512	-0.15682	-8.1515E-05	519.7898574441391	80.103	0.88266	80.124	79.771	80.654	0.021446					68	20	5	0	0	0	0.52323	1	9862	9862		57.811	2.3071	1	5184900	+		29540	21700	20362	20400	34011	34011					0.04719787663339048
IYLLESSTL	9	Unmodified	_IYLLESSTL_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.7905883789062	2	519.789515	1037.56448	0.079118	4.1125E-05	0.077807	4.0443E-05	0.15692	8.1568E-05	519.7894188339121	80.215	0.70639	79.978	79.662	80.369	-0.23784					55	16	4	0	0	0	0.67308	1	9627	9627		47.916	1.9636	1	2617300	+		29541	21700	20362	20400	34012	34012					0.04719787663339048
IYLLESSTL	9	Unmodified	_IYLLESSTL_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7897338867188	2	519.789515	1037.56448	0.15947	8.289E-05	0.086605	4.5017E-05	0.24607	0.00012791	519.7894149712582	80.119	0.95617	79.973	79.616	80.572	-0.146					62	22	4	0	0	0	0.43973	1	9578	9578		63.306	15.391	1	2671400	+		29542	21700	20362	20400	34013	34013					0.04719787663339048
IYLLLVPAL	9	Unmodified	_IYLLLVPAL_					0	0	0			REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF	REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8332824707031	2	507.833529	1013.6525	0.15322	7.7812E-05	-0.31624	-0.0001606	-0.16301	-8.2784E-05	507.8332675843573	105.03	0.43443	104.9	104.68	105.12	-0.12444					35	13	3	0	0	0	0.80342	1	13072	13072		39.021	5.5059	1	258220	+		29543	31454	20363	20401	34014	34014					0.1462245304460339
IYLLLVPAL	9	Unmodified	_IYLLLVPAL_					0	0	0			REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF	REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.833984375	2	507.833529	1013.6525	-0.83577	-0.00042443	0.90256	0.00045835	0.066783	3.3915E-05	507.8337928877734	105.04	0.48005	104.91	104.71	105.19	-0.13099					48	17	4	0	0	0	0.80342	1	13078	13078		39.021	9.18	1	244340	+		29544	31454	20363	20401	34015	34015					0.1462245304460339
IYLLLVPAL	9	Unmodified	_IYLLLVPAL_					0	0	0			REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF	REV__ENST00000379938.6_3_6:7250695-7251052:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.83343505859375	2	507.833529	1013.6525	0.29283	0.00014871	-0.2568	-0.00013041	0.036021	1.8293E-05	507.8332285414215	105.13	0.47266	104.97	104.75	105.22	-0.16484					46	18	3	0	0	0	0.80342	1	13079	13079		39.021	11.139	1	257580	+		29545	31454	20363	20401	34016	34016					0.1462245304460339
IYLLPSQLGG	10	Unmodified	_IYLLPSQLGG_					0	0	0			REV__ENST00000512624.6_1_12:127544739-127544937:-|nuORF	REV__ENST00000512624.6_1_12:127544739-127544937:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2763061523438	2	530.8055	1059.59645	-0.68852	-0.00036547	3.6929	0.0019602	3.0044	0.0015947	530.80734786241	57.787	0.53864	57.883	57.725	58.264	0.09531					23	14	2	0	0	0	0.03519	1	6416	6416		74.255	26.296	1	704200	+		29546	34139	20364	20402	34017	34017					0.0690320013713972
IYLLTKTPK	9	Unmodified	_IYLLTKTPK_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7919311523438	2	538.839342	1075.66413	-0.39669	-0.00021375	0.45876	0.0002472	0.062067	3.3444E-05	538.8396027081351	72.791	0.65562	72.8	72.489	73.145	0.0096512					33	15	3	0	0	0	0.024374	1	8802	8802		32.812	11.865	1	220660			29547	5254	20365	20403	34018	34018					0.12932650067932627
IYLLTKTPK	9	Unmodified	_IYLLTKTPK_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.839342	1075.66413	-0.57419	-0.00030939	0.37111	0.00019997	-0.20307	-0.00010942	538.83955096239	72.719	0.73251	72.719	72.414	73.146	0	0.030796	2.9407E-05	NaN	45.972	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267920			29548	5254	20365	20403							0.12932650067932627
IYLLTKTPK	9	Unmodified	_IYLLTKTPK_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.839342	1075.66413	-0.48922	-0.00026361	0.45003	0.0002425	-0.039184	-2.1114E-05	538.8394323568114	72.955	0.43042	72.678	72.454	72.884	-0.2769	-0.009725	0.00011446	NaN	45.972	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115200			29549	5254	20365	20403							0.12932650067932627
IYLLTKTPK	9	Unmodified	_IYLLTKTPK_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.839342	1075.66413	-0.40288	-0.00021709	-0.088861	-4.7882E-05	-0.49174	-0.00026497	538.8393399187208	72.912	0.42456	72.647	72.428	72.852	-0.26479	-0.040797	-0.0004663	NaN	45.972	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139840			29550	5254	20365	20403							0.12932650067932627
IYLLTKTPK	9	Unmodified	_IYLLTKTPK_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.839342	1075.66413	-1.2688	-0.00068366	0.83744	0.00045125	-0.43133	-0.00023242	538.8398384978641	72.7	0.46449	72.502	72.289	72.753	-0.1981	-0.18613	0.00053196	NaN	45.972	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111060			29551	5254	20365	20403							0.12932650067932627
IYLMEQFIK	9	Oxidation (M)	_IYLM(Oxidation (M))EQFIK_		IYLM(1)EQFIK		IYLM(130)EQFIK	0	0	1			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.8204956054688	2	600.820292	1199.62603	-1.7111	-0.0010281	1.7415	0.0010463	0.030347	1.8233E-05	600.8211270267275	66.976	0.97604	66.976	66.63	67.606	0					61	23	4	0	0	0	0.047345	1	7975	7975		129.68	25.626	1	2826500	+		29552	22189	20366	20404	34019	34019		661			0.03420396090950817
IYLMEQFIK	9	Oxidation (M)	_IYLM(Oxidation (M))EQFIK_		IYLM(1)EQFIK		IYLM(130)EQFIK	0	0	1			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	600.819580078125	2	600.820292	1199.62603	-0.78555	-0.00047198	0.60048	0.00036078	-0.18507	-0.00011119	600.8204736694504	67.378	1.1128	67.089	66.749	67.861	-0.28834					67	27	3	0	0	0	0.03849	2	8007	7988;8007		134.81	19.317	1	3038000	+		29553	22189	20366	20404	34020;34021	34021		661			0.03420396090950817
IYLMMLFI	8	Unmodified	_IYLMMLFI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.326171875	2	522.287043	1042.55953	-0.15799	-8.2516E-05	2.7637	0.0014435	2.6058	0.001361	522.7890637502364	80.855	0.56224	80.617	80.164	80.727	-0.23784					17	13	2	0	0	0	0.027866	1	9689	9689		33.493	10.45	1	159520			29554	9768	20367	20405	34022	34022					0.03995488995360574
IYLMMLFI	8	Unmodified	_IYLMMLFI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.287043	1042.55953	-1.1632	-0.00060752	5.9668	0.0031164	4.8036	0.0025088	522.7897392419936	80.535	0.75597	80.383	79.924	80.68	-0.15169	-0.11703	0.0013465	NaN	33.493	36	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66524			29555	9768	20367	20405							0.03995488995360574
IYLPWVNL	8	Unmodified	_IYLPWVNL_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.8291015625	2	509.292028	1016.5695	0.1498	7.6289E-05	-1.1554	-0.00058842	-1.0056	-0.00051213	509.2911141710532	71.689	1.4077	71.483	70.79	72.198	-0.20614					70	33	3	0	0	0	0.027866	1	8362	8362		42.474	6.8562	1	393110	+		29556	26447	20368	20406	34023	34023					0.06188136316620785
IYLSAVMGL	9	Unmodified	_IYLSAVMGL_					0	0	0			REV__ENST00000584335.5_2_17:46185274-46185337:+|nuORF	REV__ENST00000584335.5_2_17:46185274-46185337:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.77081298828125	2	483.770071	965.52559	-0.50892	-0.0002462	3.4217	0.0016553	2.9128	0.0014091	483.77165425363	43.17	0.90468	43.17	42.895	43.8	0					48	24	3	0	0	0	0.85941	1	4024	4024		35.201	1.6851	1	3563800	+		29557	35562	20369	20407	34024	34024					0.041447838279623284
IYLSTVIS	8	Unmodified	_IYLSTVIS_					0	0	0			REV__nc|ENSG00000186335|Q495M3-3|SLC36A2	REV__nc|ENSG00000186335|Q495M3-3|SLC36A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.257568359375	2	448.260394	894.506234	0.2003	8.9789E-05	-3.4654	-0.0015534	-3.2651	-0.0014636	448.25872211244354	89.189	1.6752	89.051	88.482	90.157	-0.13761					97	39	4	0	0	0	1.0574	1	10948	10948		26.796	2.5934	1	8594700	+		29558	27848	20370	20408	34025	34025					0.05476150808715374
IYLTFLLK	8	Unmodified	_IYLTFLLK_					0	0	0		ENST00000578137.5_1_17:61864524-61869872:+|nuORF;ENST00000359353.9_1_17:61851672-61869869:+|nuORF	ENST00000578137.5_1_17:61864524-61869872:+|nuORF	ENST00000578137.5_1_17:61864524-61869872:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2584228515625	2	505.817879	1009.6212	-0.66173	-0.00033472	-1.7915	-0.00090615	-2.4532	-0.0012409	505.8168904868944	56.372	0.46872	56.147	55.878	56.347	-0.2248					18	11	2	0	0	0	0.027866	1	6095	6095		25.45	0	1	348400			29559	17126	20371	20409	34026	34026					0.11677880010518038
IYLTRGKEV	9	Unmodified	_IYLTRGKEV_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8162841796875	2	539.816399	1077.61824	0.66421	0.00035855	-0.98905	-0.00053391	-0.32484	-0.00017536	539.8157417618531	37.235	0.52004	37.235	36.966	37.486	0					46	13	4	0	0	0	0.39228	1	3027	3027		66.429	2.222	1	3192800	+		29560	20124	20372	20410	34027	34027					0.0825400488570267
IYLVAAYAR	9	Unmodified	_IYLVAAYAR_					0	0	0			REV__ENSG00000133422|ENST00000397641|MORC2	REV__ENSG00000133422|ENST00000397641|MORC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.825439453125	2	520.300384	1038.58622	-0.94054	-0.00048936	-2.1156	-0.0011008	-3.0562	-0.0015901	520.2992793501325	81.369	0.2852	81.238	81.094	81.38	-0.13075					9	6	2	0	0	0	0.024325	1	10113	10113		40.573	0	1	151190	+		29561	23371	20373	20411	34028	34028					0.06846637202534112
IYLVAAYAR	9	Unmodified	_IYLVAAYAR_					0	0	0			REV__ENSG00000133422|ENST00000397641|MORC2	REV__ENSG00000133422|ENST00000397641|MORC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2763061523438	2	520.300384	1038.58622	-0.49805	-0.00025913	-2.6622	-0.0013851	-3.1602	-0.0016443	520.2987391374795	91.941	0.66487	91.933	91.494	92.159	-0.0082932					22	15	2	0	0	0	0.024541	1	11608	11608		24.203	4.206	1	106280	+		29562	23371	20373	20411	34029	34029					0.06846637202534112
IYLYPLPK	8	Unmodified	_IYLYPLPK_					0	0	0		ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7869567871094	2	503.802229	1005.5899	-0.098472	-4.9611E-05	2.047	0.0010313	1.9485	0.00098167	503.8022012022593	37.652	0.63315	37.459	37.229	37.862	-0.193					21	16	2	0	0	0	0.027866	1	3018	3018		28.254	0	1	134210			29563	8477	20374	20412	34030	34030					0.08733306976409949
IYMNVVIL	8	Unmodified	_IYMNVVIL_					0	0	0			REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant;REV__ENSG00000007314|ENST00000435607|SCN4A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.26104736328125	2	482.780439	963.546325	0.19924	9.6187E-05	4.3567	0.0021033	4.5559	0.0021995	482.78119950589854	86.94	0.54556	86.961	86.803	87.349	0.021255					17	12	2	0	0	0	0.027866	1	10897	10897		37.028	7.1869	1	57905	+		29564	19859;27620;28233;26251	20375	20413	34031	34031					0.06309374207648943
IYNVTYLEP	9	Unmodified	_IYNVTYLEP_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R;IL4R|p.R198Hfs*3|1|0.08|ENSG00000077238|chr16:27352618-27352621|AGGG/-|frameshift_variant;nc|ENSG00000077238|P24394-2|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.28857421875	2	556.28714	1110.55973	-0.42162	-0.00023454	3.7037	0.0020603	3.2821	0.0018258	556.2891207493828	65.176	1.4239	65.176	64.8	66.224	0					114	38	5	0	0	0	0.35646	1	7724	7724		68.787	3.3214	1	14169000			29565	1605	20376	20414	34032	34032					0.008869035205407272
IYPFAYYL	8	Unmodified	_IYPFAYYL_					0	0	0			REV__nc|ENSG00000050130|Q9P055-2|JKAMP	REV__nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7949829101562	2	525.270761	1048.52697	-0.37247	-0.00019565	1.2247	0.00064331	0.85226	0.00044767	526.2750641048987	36.073	0.40979	36.111	35.892	36.301	0.038044					21	11	3	0	0	0	0.027866	1	2772	2772		33.493	0	1	113260	+		29566	20154	20377	20415	34033	34033					0.004647411883752284
IYPSREEY	8	Unmodified	_IYPSREEY_					0	0	0		nc|ENSG00000204227|Q06587-2|RING1;ENSG00000204227|ENST00000374656|RING1	nc|ENSG00000204227|Q06587-2|RING1	nc|ENSG00000204227|Q06587-2|RING1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7698364257812	2	528.753464	1055.49238	-0.050989	-2.696E-05	-1.4234	-0.00075262	-1.4744	-0.00077958	529.2556425516435	40.37	0.21363	40.257	40.134	40.347	-0.11222					6	5	2	0	0	0	0.027866	1	3519	3519		33.516	0	1	121660			29567	10314	20378	20416	34034	34034					-0.03315126690381476
IYQEMELI	8	Unmodified	_IYQEMELI_					0	0	0			REV__ENST00000565384.1_1_16:27236480-27241947:-|nuORF;REV__ENST00000565070.5_1_16:27237776-27268891:-|nuORF	REV__ENST00000565384.1_1_16:27236480-27241947:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2420654296875	2	519.762443	1037.51033	-0.87286	-0.00045368	4.1656	0.0021651	3.2928	0.0017115	519.7644083077389	85.935	2.6344	85.959	85.241	87.875	0.023666					97	62	2	0	0	0	0.027866	1	10730	10730		82.305	15.876	1	283800	+		29568	26331;35268	20379	20417	34035	34035					-0.006921277598848974
IYQIIELTKG	10	Unmodified	_IYQIIELTKG_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.344989	1176.67542	-0.46523	-0.00027418	-2.689	-0.0015847	-3.1542	-0.0018589	589.3432591363344	95.498	0.94806	95.361	95.112	96.06	-0.13689					59	21	4	0	0	0	1.0719	1	11800	11800		36.447	1.2947	1	845610			29569	5420	20380	20418	34036	34036					0.09415427371413898
IYQKQILNLE	10	Unmodified	_IYQKQILNLE_					0	0	0		ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENST00000475005.1_1_9:5812814-5833063:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	421.2460021972656	3	421.243206	1260.70779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.317	1	17.317	16.817	17.817	0								0	0	0	0.76416	1	153	153		16.53	5.0752	1				29570	15046	20381	20419	34037	34037					0.08786214774409018
IYQSLIQEL	9	Unmodified	_IYQSLIQEL_					0	0	0			REV__ENST00000463772.5_1_1:165867222-165877057:+|nuORF	REV__ENST00000463772.5_1_1:165867222-165877057:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3223266601562	2	553.808239	1105.60193	-0.13691	-7.5823E-05	0.056494	3.1287E-05	-0.080417	-4.4536E-05	553.8082617255789	68.247	0.5837	67.955	67.705	68.289	-0.29267					31	14	3	0	0	0	0.0242	1	8179	8179		69.628	18.435	1	938310	+		29571	24208	20382	20420	34038	34038					0.05334878928965736
IYQTWFKKL	9	Unmodified	_IYQTWFKKL_					0	0	0		ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.5703125	3	409.569253	1225.68593	0.049554	2.0296E-05	2.3756	0.00097295	2.4251	0.00099325	409.5702718980634	32.249	0.95272	32.261	31.902	32.855	0.011799					84	24	5	0	0	0	0.70156	1	2210	2210		45.972	0.95004	1	5516500			29572	8915	20383	20421	34039	34039					0.08211454816500918
IYQTWFKKL	9	Unmodified	_IYQTWFKKL_					0	0	0		ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5702819824219	3	409.569253	1225.68593	0.57597	0.0002359	1.8749	0.00076791	2.4509	0.0010038	409.5700316746526	32.044	1.1631	32.107	31.799	32.962	0.062885					92	29	5	0	0	0	0.5973	1	2134	2134		52.937	1.744	1	5773500			29573	8915	20383	20421	34040	34040					0.08211454816500918
IYRGASTASL	10	Unmodified	_IYRGASTASL_					0	0	0			REV__ENSG00000185972|ENST00000335119|CCIN	REV__ENSG00000185972|ENST00000335119|CCIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7854614257812	2	519.782556	1037.55056	0.69291	0.00036016	2.8339	0.001473	3.5268	0.0018332	519.783910456929	78.243	1.0313	78.051	77.643	78.674	-0.19211					76	24	4	0	0	0	0.69662	1	9665	9665		67.494	1.6905	1	4071600	+		29574	27817	20384	20422	34041	34041					0.0332855495489639
IYRGEELTY	9	Unmodified	_IYRGEELTY_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2875366210938	2	572.287671	1142.56079	0.45463	0.00026018	-0.9097	-0.00052061	-0.45506	-0.00026043	572.2871093107432	52.842	1.1955	52.584	52.249	53.444	-0.25838					107	30	5	0	0	0	0.29158	1	5539	5539		76.774	1.7308	1	12640000			29575	3667	20385	20423	34042	34042					-0.004788821105421448
IYRGVVCV	8	Unmodified	_IYRGVVCV_					0	0	0			REV__ENST00000487090.1_1_22:20810643-20819754:-|nuORF	REV__ENST00000487090.1_1_22:20810643-20819754:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.75677490234375	2	454.754756	907.494958	0.030594	1.3913E-05	4.4122	0.0020065	4.4428	0.0020204	454.7566460520575	21.322	1.364	21.394	20.664	22.028	0.071487					65	27	4	0	0	0	0.94001	1	600	600		46.766	9.738	1	286660	+		29576	21020	20386	20424	34043	34043					0.03751050233586284
IYRGVVCV	8	Unmodified	_IYRGVVCV_					0	0	0			REV__ENST00000487090.1_1_22:20810643-20819754:-|nuORF	REV__ENST00000487090.1_1_22:20810643-20819754:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	454.754756	907.494958	0.030594	1.3913E-05	4.4122	0.0020065	4.4428	0.0020204	454.7566460520575	21.322	1.364	21.394	20.664	22.028	0.071487	0.02595	-9.6381E-05	NaN	46.766	65	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286660	+		29577	21020	20386	20424							0.03751050233586284
IYRLWMFY	8	Unmodified	_IYRLWMFY_					0	0	0		nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.7752075195312	2	596.304613	1190.59467	0.016658	9.9334E-06	0.33681	0.00020084	0.35347	0.00021078	596.3041364997376	68.185	0.88269	67.954	67.637	68.52	-0.23048					30	21	3	0	0	0	0.027866	1	7930	7930		29.842	14.977	1	100410			29578	10672	20387	20425	34044	34044					0.006998678475383713
IYRLWMFY	8	Unmodified	_IYRLWMFY_					0	0	0		nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	596.304613	1190.59467	0.056995	3.3987E-05	2.0644	0.001231	2.1214	0.001265	596.8076030922559	68.239	0.44791	67.984	67.74	68.188	-0.25517	0.0222	0.00039762	NaN	29.842	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121590			29579	10672	20387	20425							0.006998678475383713
IYRLWMFY	8	Unmodified	_IYRLWMFY_					0	0	0		nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	596.304613	1190.59467	-0.22311	-0.00013304	1.8797	0.0011208	1.6565	0.0009878	596.3053481387105	68.18	0.44008	67.946	67.756	68.196	-0.23376	-0.014934	0.00017731	NaN	29.842	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148090			29580	10672	20387	20425							0.006998678475383713
IYSGTIKP	8	Unmodified	_IYSGTIKP_					0	0	0		nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2;nc|ENSG00000164347|Q969S9-5|GFM2;GFM2|p.H539Qfs*7|1|0.21|ENSG00000164347|chr5:74730369-74730370|-/T|frameshift_variant;nc|ENSG00000164347|Q969S9-4|GFM2	nc|ENSG00000164347|Q969S9-3|GFM2	nc|ENSG00000164347|Q969S9-3|GFM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.75262451171875	2	439.752736	877.490919	-0.031776	-1.3974E-05	0.39941	0.00017564	0.36763	0.00016167	439.7527511396081	23.477	1.0878	23.275	23.014	24.102	-0.20193					67	24	4	0	0	0	0.93274	1	962	962		47.916	3.7988	1	1362200			29581	7268	20388	20426	34045	34045					0.047272840115169856
IYSIKMQFVL	10	Unmodified	_IYSIKMQFVL_					0	0	0			REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.5675048828125	3	414.570265	1240.68897	-0.56329	-0.00023352	-4.3528	-0.0018045	-4.9161	-0.0020381	414.5684151320132	29.065	1.4471	28.892	28.086	29.533	-0.17258					100	33	5	0	0	0	0.98527	1	1738	1738		47.96	13.787	1	2056300	+		29582	35318	20389	20427	34046	34046					0.07824961879009606
IYSVWELGKG	10	Unmodified	_IYSVWELGKG_					0	0	0			REV__nc|ENSG00000211964|P01763|IGHV3-48	REV__nc|ENSG00000211964|P01763|IGHV3-48	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.3086547851562	2	576.308406	1150.60226	0.19174	0.0001105	-0.38933	-0.00022438	-0.19759	-0.00011388	576.3081296545713	74.656	2.6321	74.473	74.005	76.637	-0.18279					164	63	5	0	0	0	1.0992	1	8769	8769		32.812	2.3088	1	6083000	+		29583	37121	20390	20428	34047	34047					0.032982986488150345
IYTHGLALLGF	11	Unmodified	_IYTHGLALLGF_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	603.2953491210938	2	602.839874	1203.66519	-0.041565	-2.5057E-05	-3.2162	-0.0019388	-3.2577	-0.0019639	602.8379762645991	68.544	0.35976	68.301	68.11	68.47	-0.24277					13	8	2	0	0	0	0.024743	1	7925	7925		27.882	0	1	105490			29584	6918	20391	20429	34048	34048					0.07150864436812299
IYTNEIRR	8	Unmodified	_IYTNEIRR_					0	0	0		ENST00000374791.7_1_11:132205045-132205564:+|nuORF	ENST00000374791.7_1_11:132205045-132205564:+|nuORF	ENST00000374791.7_1_11:132205045-132205564:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2659301757812	2	532.795998	1063.57744	-1.4712	-0.00078386	1.175	0.00062604	-0.2962	-0.00015782	532.7957698374365	33.666	0.47683	33.5	33.195	33.671	-0.16638					24	11	4	0	0	0	0.027866	1	2413	2413		18.324	11.131	1	91688			29585	13133	20392	20430	34049	34049					0.048196635660815446
IYTRLATI	8	Unmodified	_IYTRLATI_					0	0	0		ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.7872009277344	2	475.78711	949.559667	0.36201	0.00017224	-0.46926	-0.00022327	-0.10725	-5.1028E-05	475.7868325295316	85.757	1.4476	85.619	84.908	86.356	-0.13752					87	33	4	0	0	0	0.6248	1	10368	10368		73.975	8.1716	1	4488600			29586	15665;4086	20393	20431	34050	34050					0.08286948311229025
IYTRLATI	8	Unmodified	_IYTRLATI_					0	0	0		ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	475.78711	949.559667	1.7375	0.0008267	-1.2866	-0.00061216	0.45092	0.00021454	475.78627125143373	85.849	0.88593	85.849	85.457	86.343	0	0.13956	-0.00068604	NaN	73.975	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601390			29587	15665;4086	20393	20431							0.08286948311229025
IYTRLATI	8	Unmodified	_IYTRLATI_					0	0	0		ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.78711	949.559667	0.25586	0.00012174	0.21356	0.00010161	0.46942	0.00022335	475.78694946023484	85.844	0.83841	85.786	85.355	86.194	-0.05761	0.076519	0.0007415	NaN	73.975	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609110			29588	15665;4086	20393	20431							0.08286948311229025
IYTRLATI	8	Unmodified	_IYTRLATI_					0	0	0		ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.78711	949.559667	-0.61881	-0.00029442	1.1311	0.00053816	0.51229	0.00024374	475.7873662258578	85.781	0.83537	85.805	85.367	86.202	0.023666	0.095078	0.0016146	NaN	73.975	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484000			29589	15665;4086	20393	20431							0.08286948311229025
IYTTAYLSY	9	Unmodified	_IYTTAYLSY_					0	0	0			REV__ENSG00000078589|ENST00000171757|P2RY10	REV__ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3106689453125	2	547.773865	1093.53318	-0.74406	-0.00040758	-3.1514	-0.0017262	-3.8954	-0.0021338	547.7721845940097	62.593	0.76958	62.655	62.401	63.171	0.062763					39	18	3	0	0	0	0.024466	1	7248	7248		33.516	9.3128	1	834540	+		29590	20612	20394	20432	34051	34051					-0.00984785370769714
IYVAIQRSD	9	Unmodified	_IYVAIQRSD_					0	0	0		ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	ENSG00000141200|ENST00000268919|KIF2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3207397460938	2	532.790381	1063.56621	-0.60665	-0.00032322	-0.39693	-0.00021148	-1.0036	-0.0005347	532.7896986071473	30.364	0.79597	30.12	29.568	30.364	-0.24415					36	18	3	0	0	0	0.024436	1	1914	1914		38.806	0	1	364280			29591	5476	20395	20433	34052	34052					0.03696841471969492
IYVCRATNLQ	10	Unmodified	_IYVCRATNLQ_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.8104858398438	2	590.81079	1179.60703	-0.39469	-0.00023318	-2.4234	-0.0014318	-2.8181	-0.001665	590.8092472378149	59.265	1.842	59.077	58.471	60.313	-0.18795					92	46	4	0	0	0	0.55353	1	6573	6573		82.241	2.5279	1	9154500			29592	4810	20396	20434	34053	34053					0.024408595199020056
IYVFAAYFGL	10	Unmodified	_IYVFAAYFGL_					0	0	0		nc|ENSG00000187010|Q02161-4|RHD;nc|ENSG00000187010|Q02161-3|RHD;nc|ENSG00000187010|Q02161-2|RHD;nc|ENSG00000187010|Q02161-6|RHD;ENST00000564398.5_1_1:25598999-25633293:+|nuORF;nc|ENSG00000187010|Q02161-5|RHD;ENSG00000187010|ENST00000328664|RHD	nc|ENSG00000187010|Q02161-4|RHD	nc|ENSG00000187010|Q02161-4|RHD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	581.8220825195312	2	582.310418	1162.60628	-2.2068	-0.0012851	-0.39189	-0.0002282	-2.5987	-0.0015133	582.3102740349508	64.788	0.25429	64.788	64.69	64.944	0					8	6	2	0	0	0	0.03519	1	7633	7633		44.531	16.45	1	99239			29593	18599	20397	20435	34054	34054					0.03148388142517433
IYVGFATGYF	10	Unmodified	_IYVGFATGYF_					0	0	0			REV__ENSG00000161807|ENST00000541538|OR7G1	REV__ENSG00000161807|ENST00000541538|OR7G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.283447265625	2	569.2844	1136.55425	0.34398	0.00019582	-0.97758	-0.00055652	-0.6336	-0.0003607	569.2839725194614	81.437	1.2694	81.208	80.939	82.208	-0.2289					129	29	6	0	0	0	0.75995	1	9848	9848		63.306	5.0763	1	48791000	+		29594	25400	20398	20436	34055	34055					-0.008567752712451693
IYVILLYAK	9	Unmodified	_IYVILLYAK_					0	0	0		SSTR1|p.R85L|1|0.32|ENSG00000139874|chr14:38209643-38209643|G/T|missense_variant	SSTR1|p.R85L|1|0.32|ENSG00000139874|chr14:38209643-38209643|G/T|missense_variant	SSTR1|p.R85L|1|0.32|ENSG00000139874|chr14:38209643-38209643|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3118896484375	2	548.344261	1094.67397	-0.59945	-0.0003287	-0.61815	-0.00033896	-1.2176	-0.00066766	548.343797143743	56.087	0.24261	56.087	56.035	56.277	0					8	6	2	0	0	0	0.024386	1	6225	6225		42.474	21.993	1	97355			29595	37970	20399	20437	34056	34056					0.1304183807330901
IYVKLFRT	8	Unmodified	_IYVKLFRT_					0	0	0			REV__ENST00000302236.9_1_4:83826058-83827525:+|nuORF	REV__ENST00000302236.9_1_4:83826058-83827525:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.32177734375	2	520.318577	1038.6226	3.0178	0.0015702	3.3729	0.001755	6.3907	0.0033252	520.3203018630787	17.673	0.68731	17.673	17.498	18.186	0					34	13	4	0	0	0	1.0574	1	203	203		26.796	0.10319	1	1145700	+		29596	30072	20400	20438	34057	34057					0.10483514099269087
IYVVAHVPD	9	Unmodified	_IYVVAHVPD_					0	0	0			REV__nc|ENSG00000058262|P61619-3|SEC61A1	REV__nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	506.776742	1011.53893	1.0823	0.00054848	-2.3002	-0.0011657	-1.2179	-0.00061723	507.2777787875399	59.483	0.18245	59.282	59.136	59.318	-0.20016					6	4	2	0	0	0	0.024325	1	6762	6762		60.294	33.601	1	45638	+		29597	20229	20401	20439	34058	34058					0.03362357931564475
IYVVQDGLL	9	Unmodified	_IYVVQDGLL_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.29132080078125	2	510.292225	1018.5699	-0.050037	-2.5533E-05	-0.14602	-7.451E-05	-0.19605	-0.00010004	510.2919746900871	58.598	0.92779	58.417	58.145	59.072	-0.18134					39	22	2	0	0	0	0.20967	1	6439	6439		87.754	2.3948	1	2435200			29598	1016	20402	20440	34059	34059					0.061355112458159056
IYYQILSL	8	Unmodified	_IYYQILSL_					0	0	0		ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;nc|ENSG00000164077|Q86VX9-2|MON1A;ENSG00000164077|ENST00000296473|MON1A	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7882385253906	2	506.789318	1011.56408	-0.36364	-0.00018429	-4.2172	-0.0021372	-4.5809	-0.0023215	506.78675821252	49.188	1.5551	49.035	48.261	49.816	-0.15277					97	42	5	0	0	0	0.81662	1	5068	5068		57.811	6.4758	1	3626500			29599	15338	20403	20441	34060	34060					0.058764127341419226
IYYQILSL	8	Unmodified	_IYYQILSL_					0	0	0		ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;nc|ENSG00000164077|Q86VX9-3|MON1A;nc|ENSG00000164077|Q86VX9-2|MON1A;ENSG00000164077|ENST00000296473|MON1A	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.7882995605469	2	506.789318	1011.56408	-1.0646	-0.00053955	-3.749	-0.0019	-4.8136	-0.0024395	506.7872167151045	48.946	0.80366	49.021	48.736	49.54	0.074196					57	21	3	0	0	0	0.68535	1	4968	4968		68.485	7.5128	1	2764200			29600	15338	20403	20441	34061	34061					0.058764127341419226
IYYWFVDW	8	Unmodified	_IYYWFVDW_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.2815551757812	2	596.279118	1190.54368	-0.16986	-0.00010128	2.5933	0.0015463	2.4234	0.001445	596.2806716426511	59.248	0.60373	59.067	58.831	59.435	-0.18134					25	14	2	0	0	0	0.94001	1	6540	6540		46.766	5.3398	1	3219900	+		29601	28272	20404	20442	34062	34062					-0.04396757925678685
KAAAKAALIY	10	Unmodified	_KAAAKAALIY_					0	0	0		ENST00000519916.1_1_8:102213783-102213969:-|nuORF;ENSG00000120963|ENST00000311212|ZNF706	ENST00000519916.1_1_8:102213783-102213969:-|nuORF	ENST00000519916.1_1_8:102213783-102213969:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.31591796875	2	510.316035	1018.61752	-1.2319	-0.00062865	0.68965	0.00035194	-0.54223	-0.00027671	510.31630676811966	40.47	0.95666	40.24	39.891	40.848	-0.2302					45	25	3	0	0	0	0.3934	1	3486	3486		99.375	5.3685	1	1893000			29602	3848	20405	20443	34063	34063					0.10895210236651565
KAAAKAAQF	9	Unmodified	_KAAAKAAQF_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.2637939453125	2	453.263802	904.513051	0.5108	0.00023153	-0.50468	-0.00022875	0.0061201	2.774E-06	453.263538278462	21.443	1.01	21.266	20.581	21.591	-0.17721					48	20	3	0	0	0	0.013492	4	676	631;665;676;689		177.71	85.516	1	1658700			29603	1128	20406	20444	34064;34065;34066;34067	34066					0.05697508479943281
KAAAKAAQF	9	Unmodified	_KAAAKAAQF_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.2638244628906	2	453.263802	904.513051	0.0059251	2.6857E-06	-0.080347	-3.6418E-05	-0.074422	-3.3733E-05	453.2637197093619	21.541	0.58342	21.35	21.078	21.662	-0.19072					35	11	4	0	0	0	0.014907	2	682	669;682		162.31	80.001	1	1397000			29604	1128	20406	20444	34068;34069	34069					0.05697508479943281
KAAAKAAQF	9	Unmodified	_KAAAKAAQF_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.2637023925781	2	453.263802	904.513051	-1.2425	-0.00056316	1.0218	0.00046313	-0.22069	-0.00010003	453.26421937723495	21.551	0.5346	21.339	21.069	21.604	-0.2128					33	10	4	0	0	0	0.072054	2	651	651;664		120.62	35.705	1	1599100			29605	1128	20406	20444	34070;34071	34070					0.05697508479943281
KAAAKRQVL	9	Unmodified	_KAAAKRQVL_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.8192443847656	2	492.819276	983.623999	3.7124	0.0018295	-3.5564	-0.0017527	0.15596	7.686E-05	492.8173910541742	18.561	0.34373	18.624	18.501	18.845	0.063307					10	6	2	0	0	0	0.59099	1	265	265		53.351	1.0523	1	98850			29606	8204	20407	20445	34072	34072					0.13153148188030173
KAAAQKLKKG	10	Unmodified	_KAAAQKLKKG_					0	0	0		nc|ENSG00000163155|Q96S90-2|LYSMD1;ENSG00000163155|ENST00000368908|LYSMD1	nc|ENSG00000163155|Q96S90-2|LYSMD1	nc|ENSG00000163155|Q96S90-2|LYSMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7568969726562	2	521.840208	1041.66586	-0.87751	-0.00045792	0.64593	0.00033707	-0.23157	-0.00012084	521.8403541908326	25.922	0.49038	25.686	25.425	25.916	-0.23603					27	11	3	0	0	0	0.03519	1	1298	1298		26.693	1.1189	1	755250			29607	7043	20408	20446	34073	34073					0.14669703876552376
KAAARDIFSP	10	Unmodified	_KAAARDIFSP_					0	0	0		ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2999877929688	2	538.298373	1074.58219	-1.1053	-0.00059498	3.9066	0.0021029	2.8013	0.001508	538.3002728936068	27.238	0.55083	27.082	26.715	27.266	-0.15664					36	12	4	0	0	0	0.72729	1	1452	1452		65.465	19.513	1	1137600			29608	7330	20409	20447	34074	34074					0.04788547708835722
KAAARDIFSP	10	Unmodified	_KAAARDIFSP_					0	0	0		ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.298373	1074.58219	-0.70795	-0.00038109	3.5097	0.0018893	2.8018	0.0015082	538.3000596932931	27.174	0.59223	26.932	26.614	27.207	-0.24217	-0.026219	-0.00011339	NaN	65.465	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1280800			29609	7330	20409	20447							0.04788547708835722
KAAARDIFSP	10	Unmodified	_KAAARDIFSP_					0	0	0		ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.298373	1074.58219	-0.73357	-0.00039488	3.494	0.0018808	2.7604	0.0014859	538.3001035939296	27.03	0.68048	26.862	26.462	27.142	-0.16816	-0.096889	-0.00013038	NaN	65.465	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129300			29610	7330	20409	20447							0.04788547708835722
KAAARRRR	8	Unmodified	_KAAARRRR_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.8197937011719	2	492.817933	983.621313	0.14539	7.1651E-05	2.6066	0.0012846	2.752	0.0013562	492.81907840056687	18.577	0.44134	18.446	18.253	18.694	-0.13147					19	8	3	0	0	0	1.0009	1	297	297		37.159	3.6435	1	113380			29611	2462	20410	20448	34075	34075					0.12884737573745042
KAAARRRR	8	Unmodified	_KAAARRRR_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.8197326660156	2	492.817933	983.621313	3.7124	0.0018295	-0.83197	-0.00041001	2.8804	0.0014195	492.8173910541742	18.561	0.34373	18.624	18.501	18.845	0.063307					10	6	2	0	0	0	1.043	1	278	278		30.504	2.6214	1	98850			29612	2462	20410	20448	34076	34076					0.12884737573745042
KAADLSKPI	9	Unmodified	_KAADLSKPI_					0	0	0		ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20;nc|ENSG00000140153|Q8TBZ3-7|WDR20;ENST00000557186.5_1_14:102606326-102662237:+|nuORF;nc|ENSG00000140153|Q8TBZ3-3|WDR20	ENSG00000140153|ENST00000342702|WDR20	ENSG00000140153|ENST00000342702|WDR20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7852478027344	2	471.784567	941.554582	-0.039333	-1.8557E-05	0.41707	0.00019677	0.37774	0.00017821	471.78457126588626	54.626	0.55125	54.626	54.393	54.944	0					43	15	4	0	0	0	0.17822	3	6004	5981;5992;6004		93.195	26.766	1	3052900			29613	5394	20411	20449	34077;34078;34079	34079					0.08146644448606821
KAADLSKPI	9	Unmodified	_KAADLSKPI_					0	0	0		ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20;nc|ENSG00000140153|Q8TBZ3-7|WDR20;ENST00000557186.5_1_14:102606326-102662237:+|nuORF;nc|ENSG00000140153|Q8TBZ3-3|WDR20	ENSG00000140153|ENST00000342702|WDR20	ENSG00000140153|ENST00000342702|WDR20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.78515625	2	471.784567	941.554582	0.991	0.00046754	-0.58006	-0.00027366	0.41094	0.00019387	471.7841226074563	54.453	0.55283	54.551	54.328	54.881	0.098015					37	15	3	0	0	0	0.30449	1	5888	5888		75.043	10.836	1	3289300			29614	5394	20411	20449	34080	34080					0.08146644448606821
KAAHAKTK	8	Unmodified	_KAAHAKTK_					0	0	0		nc|ENSG00000170469|Q86W54-2|SPATA24;ENSG00000170469|ENST00000450845|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	nc|ENSG00000170469|Q86W54-2|SPATA24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.74053955078125	2	427.763969	853.513385	0.68906	0.00029476	0.087539	3.7446E-05	0.7766	0.0003322	427.76363682870505	22.403	0.50446	22.214	22.055	22.559	-0.18894					20	10	2	0	0	0	0.027866	1	799	799		42.396	0	1	63751			29615	8044	20412	20450	34081	34081					0.08076928199807298
KAAIISQLLH	10	Unmodified	_KAAIISQLLH_					0	0	0		ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6	ENSG00000138642|ENST00000264346|HERC6	ENSG00000138642|ENST00000264346|HERC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3272705078125	2	547.340041	1092.66553	-0.68347	-0.00037409	1.8365	0.0010052	1.153	0.00063109	547.8421370035469	42.778	1.3396	42.778	42.461	43.8	0					65	36	3	0	0	0	0.03519	1	3940	3940		93.143	13.204	1	118140			29616	5258	20413	20451	34082	34082					0.12290284156711095
KAAIISQLLH	10	Unmodified	_KAAIISQLLH_					0	0	0		ENSG00000138642|ENST00000264346|HERC6;nc|ENSG00000138642|Q8IVU3-2|HERC6	ENSG00000138642|ENST00000264346|HERC6	ENSG00000138642|ENST00000264346|HERC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3268432617188	2	547.340041	1092.66553	-0.63796	-0.00034918	1.4671	0.000803	0.82914	0.00045382	547.8421167567567	43.019	1.0554	42.88	42.484	43.54	-0.13929					43	28	3	0	0	0	0.03519	1	3932	3932		98.629	19.178	1	180590			29617	5258	20413	20451	34083	34083					0.12290284156711095
KAAKEEPVK	9	Unmodified	_KAAKEEPVK_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8214416503906	2	500.295299	998.576045	-0.082678	-4.1364E-05	-2.4777	-0.0012396	-2.5604	-0.001281	500.29390381762335	19.124	0.59288	19.006	18.804	19.397	-0.11872					21	11	3	0	0	0	0.024541	1	405	405		19.104	0	1	65646	+		29618	22407	20414	20452	34084	34084					0.07670029477321805
KAAKGEGVVL	10	Unmodified	_KAAKGEGVVL_					0	0	0			REV__ENST00000424459.7_2_5:56469852-56471319:+|nuORF	REV__ENST00000424459.7_2_5:56469852-56471319:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2818603515625	2	486.297842	970.581131	0.11824	5.7499E-05	-0.5603	-0.00027247	-0.44206	-0.00021497	486.29739709852475	57.207	0.87627	57.043	56.78	57.656	-0.16432					57	23	3	0	0	0	0.03519	1	6469	6469		61.691	17.314	1	1085900	+		29619	32233	20415	20453	34085	34085					0.09466333339935318
KAAKKIDKI	9	Unmodified	_KAAKKIDKI_					0	0	0			REV__ENSG00000255423|ENST00000533473|EBLN2	REV__ENSG00000255423|ENST00000533473|EBLN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.8014221191406	2	507.837134	1013.65972	-1.0409	-0.00052859	1.0007	0.0005082	-0.040148	-2.0388E-05	507.8375781121788	55.227	0.63359	55.325	55.148	55.782	0.098011					24	16	2	0	0	0	0.024367	1	5995	5995		36.447	9.7538	1	184350	+		29620	29067	20416	20454	34086	34086					0.153431856450311
KAAKLKEKY	9	Unmodified	_KAAKLKEKY_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000560051.1_1_14:103830578-103830779:-|nuORF;ENST00000511316.1_1_4:174253953-174254163:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;ENSG00000029993|ENST00000325307|HMGB3;nc|ENSG00000067066|P23497|SP100	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8340454101562	2	539.834591	1077.65463	0.63053	0.00034038	-0.61268	-0.00033075	0.017847	9.6342E-06	539.8341317238751	18.134	0.34392	17.978	17.755	18.099	-0.15637					18	6	3	0	0	0	0.45795	1	266	266		62.107	3.3255	1	263300			29621	9808;7213;1008;18067	20417	20455	34087	34087					0.11890881782414908
KAAKLKEKY	9	Unmodified	_KAAKLKEKY_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000560051.1_1_14:103830578-103830779:-|nuORF;ENST00000511316.1_1_4:174253953-174254163:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;ENSG00000029993|ENST00000325307|HMGB3;nc|ENSG00000067066|P23497|SP100	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.8345336914062	2	539.834591	1077.65463	-0.29774	-0.00016073	0.13625	7.3555E-05	-0.16149	-8.7178E-05	539.8345199036104	18.143	0.44591	17.937	17.714	18.16	-0.20669					22	8	4	0	0	0	0.32064	1	258	258		72.879	23.438	1	259730			29622	9808;7213;1008;18067	20417	20455	34088	34088					0.11890881782414908
KAAKLKEKY	9	Unmodified	_KAAKLKEKY_					0	0	0		ENSG00000164104|ENST00000296503|HMGB2;ENST00000560051.1_1_14:103830578-103830779:-|nuORF;ENST00000511316.1_1_4:174253953-174254163:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;ENSG00000029993|ENST00000325307|HMGB3;nc|ENSG00000067066|P23497|SP100	ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.833984375	2	539.834591	1077.65463	2.6599	0.0014359	-2.7347	-0.0014763	-0.074757	-4.0356E-05	539.8329461709867	18.172	0.74584	17.929	17.429	18.175	-0.24256					28	14	4	0	0	0	0.40693	1	240	240		65.465	17.808	1	187480			29623	9808;7213;1008;18067	20417	20455	34089	34089					0.11890881782414908
KAALESILQ	9	Unmodified	_KAALESILQ_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.77691650390625	2	486.78985	971.565146	-0.39179	-0.00019072	3.8995	0.0018983	3.5077	0.0017075	486.79158739963793	37.387	0.88484	37.323	37.052	37.937	-0.063385					44	24	3	0	0	0	0.015852	1	3099	3099		115.49	13.893	1	2787600	+		29624	23390	20418	20456	34090	34090					0.07822627103041668
KAALFLATSS	10	Unmodified	_KAALFLATSS_					0	0	0			REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.78814697265625	2	504.78985	1007.56515	0.83877	0.0004234	-3.7781	-0.0019071	-2.9393	-0.0014837	504.7878016205893	19.732	0.78431	19.498	19.226	20.01	-0.23345					39	15	4	0	0	0	0.941	1	429	429		51.335	8.9393	1	678370	+		29625	19264	20419	20457	34091	34091					0.06166627103038991
KAALHLPTT	9	Unmodified	_KAALHLPTT_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MSMS	OPSCC_40_ClassI_Rep-1	4	476.2879943847656	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102	1	101.87	101.37	102.37	-0.12931								0	0	0	0.64601	1	12660	12660		31.955	5.1588	1		+		29626	27103	20420	20458	34092	34092					0.07766064168458797
KAALKSLIP	9	Unmodified	_KAALKSLIP_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718811035156	2	470.813128	939.611703	0.60468	0.00028469	-1.7716	-0.00083407	-1.1669	-0.00054938	470.81198744992975	40.088	0.70795	40.088	39.808	40.516	0					42	19	3	0	0	0	0.024292	1	3493	3493		68.787	15.435	1	509740			29627	1691	20421	20459	34093	34093					0.13948111724982937
KAALLDQAL	9	Unmodified	_KAALLDQAL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant	ENSG00000127603|ENST00000564288|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7854309082031	2	471.784567	941.554582	0.32281	0.0001523	0.37255	0.00017576	0.69536	0.00032806	471.7845730158271	54.737	0.51876	54.587	54.339	54.857	-0.15036					40	14	4	0	0	0	0.34489	1	5987	5987		69.628	11.398	1	2769300			29628	4256	20422	20460	34094	34094					0.08146644448606821
KAANARHEE	9	Unmodified	_KAANARHEE_					0	0	0		nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25;ENST00000506896.1_1_4:186131373-186188125:+|nuORF	nc|ENSG00000109762|Q9H3E2|SNX25	nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2804565429688	2	513.259779	1024.50501	-0.18039	-9.2587E-05	3.7951	0.0019479	3.6147	0.0018553	513.2615804430395	42.698	0.6927	42.724	42.493	43.186	0.026016					41	18	3	0	0	0	0.024374	1	3926	3926		40.778	14.085	1	1073400			29629	2995	20423	20461	34095	34095					-0.0062667050747222675
KAANARHEE	9	Unmodified	_KAANARHEE_					0	0	0		nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25;ENST00000506896.1_1_4:186131373-186188125:+|nuORF	nc|ENSG00000109762|Q9H3E2|SNX25	nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.259779	1024.50501	-0.095376	-4.8953E-05	3.5084	0.0018007	3.413	0.0017518	513.2614779637992	42.588	0.61143	42.588	42.355	42.967	0	-0.057079	-1.3388E-05	NaN	40.778	41	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1201700			29630	2995	20423	20461							-0.0062667050747222675
KAANQMKPID	10	Unmodified	_KAANQMKPID_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.809326171875	2	558.297516	1114.58048	-0.25888	-0.00014453	-1.3343	-0.00074495	-1.5932	-0.00088948	558.2964492162074	52.233	0.36572	52.325	52.079	52.445	0.091938					13	8	2	0	0	0	0.03519	1	5482	5482		39.253	0	1	39187	+		29631	21782	20424	20462	34096	34096					0.02777170628564818
KAANQMKPID	10	Unmodified	_KAANQMKPID_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.809326171875	2	558.297516	1114.58048	-0.88078	-0.00049174	0.031205	1.7422E-05	-0.84958	-0.00047432	558.2972687372395	51.632	0.85035	51.719	51.264	52.114	0.087006					57	23	3	0	0	0	0.03519	1	5482	5482		39.253	0	1	1531800	+		29632	21782	20424	20462	34097	34097					0.02777170628564818
KAAPQIGR	8	Unmodified	_KAAPQIGR_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	421.7279052734375	2	420.756144	839.497735	0.41552	0.00017483	0.74867	0.00031501	1.1642	0.00048984	420.75646587751305	25.266	0.44677	25.346	25.134	25.581	0.08009					15	10	2	0	0	0	0.027866	1	1100	1100		25.45	4.9683	1	87412	+		29633	37064;31322	20425	20463	34098	34098					0.07156641682752252
KAAQKAAAF	9	Unmodified	_KAAQKAAAF_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.2640075683594	2	453.263802	904.513051	0.0059251	2.6857E-06	-0.080347	-3.6418E-05	-0.074422	-3.3733E-05	453.2637197093619	21.541	0.58342	21.35	21.078	21.662	-0.19072					35	11	4	0	0	0	0.43973	1	697	697		63.306	3.188	1	1397000			29634	5087	20426	20464	34099	34099					0.05697508479931912
KAARLPVAP	9	Unmodified	_KAARLPVAP_					0	0	0		ENSG00000182326|ENST00000360817|C1S;ENST00000443875.5_1_12:7174318-7177952:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.7589416503906	2	461.795269	921.575986	-0.33566	-0.00015501	2.0334	0.00093902	1.6978	0.00078402	461.79630852232145	30.757	0.16293	30.769	30.668	30.831	0.011797					6	3	2	0	0	0	0.024412	1	1972	1972		24.203	11.244	1	25795			29635	9127	20427	20465	34100	34100					0.11206074267977328
KAASVRPVL	9	Unmodified	_KAASVRPVL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7642517089844	2	470.800552	939.58655	0.034846	1.6406E-05	0.14857	6.9949E-05	0.18342	8.6355E-05	470.8004246319038	31.874	0.59362	31.874	31.63	32.224	0					31	14	3	0	0	0	0.024466	1	2168	2168		39.253	11.371	1	547700			29636	10587	20428	20466	34101	34101					0.11434056922405489
KAASVRPVL	9	Unmodified	_KAASVRPVL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7644348144531	2	470.800552	939.58655	0.029942	1.4097E-05	0.081684	3.8457E-05	0.11163	5.2553E-05	470.8005188569259	31.766	0.47994	31.777	31.583	32.063	0.011797					29	11	3	0	0	0	0.024466	1	2141	2141		31.53	7.0106	1	477350			29637	10587	20428	20466	34102	34102					0.11434056922405489
KACRVWNI	8	Unmodified	_KACRVWNI_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2609558105469	2	495.271104	988.527655	-0.32066	-0.00015881	2.1982	0.0010887	1.8775	0.00092987	495.2720755510338	29.171	0.35897	29.249	29.091	29.45	0.078346					11	8	2	0	0	0	0.027866	1	1742	1742		12.959	0	1	105670	+		29638	25690	20429	20467	34103	34103					0.03293257356426693
KACRVWNI	8	Unmodified	_KACRVWNI_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.271104	988.527655	-0.95716	-0.00047406	2.3537	0.0011657	1.3965	0.00069165	495.2723048002432	29.44	0.30983	29.44	29.26	29.57	0	0.061117	-7.8072E-05	NaN	12.959	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88321	+		29639	25690	20429	20467							0.03293257356426693
KADAVVLNEVW	11	Unmodified	_KADAVVLNEVW_					0	0	0			REV__ADAMTS7|p.T246N|1|0.06|ENSG00000136378|chr15:78796672-78796672|G/T|missense_variant	REV__ADAMTS7|p.T246N|1|0.06|ENSG00000136378|chr15:78796672-78796672|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3365478515625	2	622.337695	1242.66084	0.63113	0.00039278	-2.511	-0.0015627	-1.8799	-0.0011699	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.0465	1	13515	13515		26.063	2.5407	1	1535400	+		29640	19068	20430	20468	34104	34104					0.0492135522326862
KADKLKRI	8	Unmodified	_KADKLKRI_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.32177734375	2	486.321651	970.62875	-1.0202	-0.00049612	0.50156	0.00024392	-0.5186	-0.0002522	486.32170709094424	21.257	0.92931	21.044	20.723	21.652	-0.2128					35	18	4	0	0	0	0.96719	1	616	616		42.474	1.9018	1	403990			29641	10812	20431	20469	34105	34105					0.14226032330805083
KADMSAVKP	9	Unmodified	_KADMSAVKP_					0	0	0			REV__ENSG00000136274|ENST00000490531|NACAD	REV__ENSG00000136274|ENST00000490531|NACAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2672119140625	2	473.754953	945.495352	0.40232	0.0001906	-3.3585	-0.0015911	-2.9562	-0.0014005	473.75318185775103	61.503	0.57456	61.574	61.239	61.814	0.071125					30	14	3	0	0	0	0.024506	1	7002	7002		16.473	0	1	697490	+		29642	23645	20432	20470	34106	34106					0.02042425162778727
KADNWDKQY	9	Unmodified	_KADNWDKQY_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.274658203125	2	584.275095	1166.53564	-0.56421	-0.00032966	-0.048704	-2.8456E-05	-0.61292	-0.00035811	584.275044587136	49.243	1.2389	49.061	48.738	49.977	-0.18206					84	32	4	0	0	0	0.54416	1	4963	4963		56.434	3.4971	1	12459000	+		29643	27537	20433	20471	34107	34107					-0.040969369131062194
KADYEKHK	8	Unmodified	_KADYEKHK_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2838134765625	2	509.769448	1017.52434	0.046728	2.3821E-05	-0.5355	-0.00027298	-0.48877	-0.00024916	509.769026299042	46.572	0.49422	46.475	46.295	46.789	-0.096653					28	13	3	0	0	0	0.027866	1	4474	4474		37.159	0	1	1201400			29644	18677	20434	20472	34108	34108					0.01628285783431238
KADYRYTYD	9	Unmodified	_KADYRYTYD_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.2598266601562	2	597.774928	1193.5353	-0.63402	-0.000379	0.2216	0.00013246	-0.41242	-0.00024654	597.7750518224731	64.44	1.4383	64.184	63.462	64.901	-0.25563					53	36	2	0	0	0	0.024344	1	7379	7379		64.207	11.271	1	144230			29645	7286	20435	20473	34109	34109					-0.053723566329381356
KADYRYTYD	9	Unmodified	_KADYRYTYD_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	597.774928	1193.5353	-0.55359	-0.00033092	2.301	0.0013755	1.7474	0.0010446	598.2765030268838	64.131	0.14688	63.88	63.765	63.912	-0.25141	-0.22363	0.0018984	NaN	64.207	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93114			29646	7286	20435	20473							-0.053723566329381356
KADYRYTYD	9	Unmodified	_KADYRYTYD_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	597.774928	1193.5353	-0.71104	-0.00042504	0.86183	0.00051518	0.15079	9.0139E-05	597.7752015353747	64.393	0.87326	64.158	63.617	64.49	-0.2345	0.054568	0.00017778	NaN	64.207	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221250			29647	7286	20435	20473							-0.053723566329381356
KADYRYTYD	9	Unmodified	_KADYRYTYD_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	597.774928	1193.5353	-0.60388	-0.00036099	0.86026	0.00051424	0.25638	0.00015326	597.7750760721767	64.39	0.79393	64.192	63.71	64.504	-0.19852	0.088446	0.0001759	NaN	64.207	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139770			29648	7286	20435	20473							-0.053723566329381356
KAEAKQLEA	9	Unmodified	_KAEAKQLEA_					0	0	0			REV__nc|ENSG00000103222|P33527-6|ABCC1	REV__nc|ENSG00000103222|P33527-6|ABCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.28704833984375	2	494.277106	986.53966	0.024236	1.1979E-05	0.64942	0.000321	0.67366	0.00033297	494.2775822146281	22.54	0.73773	22.351	22.102	22.839	-0.18894					52	15	6	0	0	0	0.024319	1	784	784		47.657	0	1	655960	+		29649	21366	20436	20474	34110	34110					0.04585152580614249
KAECSVWQV	9	Unmodified	_KAECSVWQV_					0	0	0			REV__ENSG00000130054|ENST00000252338|NALF2	REV__ENSG00000130054|ENST00000252338|NALF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.238037109375	2	525.257859	1048.50117	-0.91384	-0.00048	0.83466	0.00043841	-0.079183	-4.1592E-05	525.2581122309628	56.201	0.49724	56.201	55.927	56.424	0					23	13	2	0	0	0	0.024263	1	6279	6279		42.396	0	1	368550	+		29650	23079	20437	20475	34111	34111					-0.02114476325573378
KAEGKKPIS	9	Unmodified	_KAEGKKPIS_					0	0	0		ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENST00000475133.5_1_1:15892828-15894669:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7358703613281	2	479.290017	956.565481	0.31298	0.00015001	0.46901	0.00022479	0.78199	0.0003748	479.29034091156865	60.374	0.48276	60.177	59.947	60.429	-0.19742					18	11	2	0	0	0	0.024447	1	6695	6695		49.442	25.239	1	197240			29651	15049	20438	20476	34112	34112					0.0854604682289164
KAEHVELK	8	Unmodified	_KAEHVELK_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63;REV__NT5DC1-SEC63|1|fusion	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.28680419921875	2	477.274367	952.53418	0.39757	0.00018975	-0.48302	-0.00023053	-0.085448	-4.0782E-05	477.2740056450552	54.276	0.95874	54.129	53.383	54.342	-0.14723					38	26	2	0	0	0	0.027866	1	5927	5927		35.618	0	1	618420	+		29652	20024;37298	20439	20477	34113	34113					0.05601473788806288
KAEIQALTFL	10	Unmodified	_KAEIQALTFL_					0	0	0		nc|ENSG00000054796|Q9Y5K1-2|SPO11;ENSG00000054796|ENST00000371263|SPO11	nc|ENSG00000054796|Q9Y5K1-2|SPO11	nc|ENSG00000054796|Q9Y5K1-2|SPO11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.33056640625	2	567.331882	1132.64921	-0.10765	-6.1074E-05	-3.625	-0.0020566	-3.7326	-0.0021176	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.0719	1	10984	10984		36.447	3.6962	1	5896300			29653	1178	20440	20478	34114	34114					0.08819158199935373
KAEKATEVL	9	Unmodified	_KAEKATEVL_					0	0	0			REV__ENSG00000169230|ENST00000303204|PRELID1	REV__ENSG00000169230|ENST00000303204|PRELID1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7862243652344	2	494.787307	987.560061	-0.40307	-0.00019943	-2.1959	-0.0010865	-2.5989	-0.0012859	494.78541855198455	32.696	0.90815	32.459	32.042	32.95	-0.23666					61	21	5	0	0	0	0.42604	1	2262	2262		64.207	0.901	1	2868900	+		29654	26338	20441	20479	34115	34115					0.06578323240421469
KAEKLAVEL	9	Unmodified	_KAEKLAVEL_					0	0	0			REV__nc|ENSG00000123240|Q96CV9-3|OPTN	REV__nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.8075256347656	2	500.8055	999.596446	0.26474	0.00013258	4.1125	0.0020595	4.3772	0.0021921	500.80720596841684	107.19	0.46753	107.04	106.83	107.3	-0.15772					33	17	3	0	0	0	0.72875	1	13315	13315		44.117	1.7207	1	264810	+		29655	22686	20442	20480	34116	34116					0.09663200137117656
KAEKLKSL	8	Unmodified	_KAEKLKSL_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2486267089844	2	458.794935	915.575317	-0.32499	-0.0001491	0.52935	0.00024286	0.20436	9.3761E-05	458.79493652487287	30.656	0.29136	30.664	30.496	30.787	0.0086708					8	6	2	0	0	0	0.027866	1	1964	1964		14.137	0	1	61473			29656	2209	20443	20481	34117	34117					0.11415234828268694
KAEKRLFD	8	Unmodified	_KAEKRLFD_					0	0	0		ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151475|ENST00000281154|SLC25A31	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7869873046875	2	503.787641	1005.56073	0.71569	0.00036056	-1.0851	-0.00054668	-0.36944	-0.00018612	503.7870478937873	54.217	1.1421	54.315	53.94	55.083	0.098015					89	32	5	0	0	0	1.0338	1	5876	5876		31.955	0	1	10060000			29657	6205	20444	20482	34118	34118					0.05817162680136789
KAELQLPPP	9	Unmodified	_KAELQLPPP_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7876281738281	2	496.792392	991.570232	-0.25504	-0.0001267	-0.76018	-0.00037765	-1.0152	-0.00050435	496.79161988392144	56.491	0.55433	56.589	56.359	56.913	0.097897					22	15	2	0	0	0	0.024436	1	6271	6271		38.806	10.924	1	402550			29658	1848	20445	20483	34119	34119					0.07410930965647822
KAELQLPPP	9	Unmodified	_KAELQLPPP_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.792392	991.570232	0.030604	1.5204E-05	-0.9404	-0.00046719	-0.9098	-0.00045198	496.7915318283695	56.684	0.40655	56.684	56.497	56.904	0	0.053329	-0.00021949	NaN	38.806	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380310			29659	1848	20445	20483							0.07410930965647822
KAELQLPPP	9	Unmodified	_KAELQLPPP_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.792392	991.570232	-0.45855	-0.0002278	-0.54774	-0.00027211	-1.0063	-0.00049991	496.79158373398775	56.784	0.41692	56.619	56.459	56.876	-0.16431	-0.011461	0.00017066	NaN	38.806	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399300			29660	1848	20445	20483							0.07410930965647822
KAELVRKRA	9	Unmodified	_KAELVRKRA_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8154296875	2	535.843282	1069.67201	-0.50273	-0.00026938	2.6085	0.0013978	2.1058	0.0011284	535.8444160162901	71.297	0.38528	71.308	71.086	71.472	0.010735					20	9	3	0	0	0	0.024541	1	8583	8583		23.042	16.73	1	289710	+		29661	21597	20446	20484	34120	34120					0.13996222108062284
KAERLLNP	8	Unmodified	_KAERLLNP_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.29315185546875	2	470.782359	939.550165	0.051047	2.4032E-05	0.35744	0.00016827	0.40848	0.00019231	470.7822860252025	53.03	0.62643	53.03	52.711	53.337	0					28	16	3	0	0	0	0.027866	1	5698	5698		39.253	0	1	2069300			29662	3792	20447	20485	34121	34121					0.0779718002570462
KAERRLAYN	9	Unmodified	_KAERRLAYN_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2716064453125	2	560.814722	1119.61489	-1.4273	-0.00080045	2.6701	0.0014974	1.2428	0.000697	561.3166437183824	93.276	0.13124	93.136	93.048	93.179	-0.13995					4	2	2	0	0	0	0.023454	1	11463	11463		71.877	29.481	1	18695			29663	9267	20448	20486	34122	34122					0.05986754831701546
KAETSTSTAM	10	Oxidation (M)	_KAETSTSTAM(Oxidation (M))_		KAETSTSTAM(1)		KAETSTSTAM(88)	0	0	1			REV__ENSG00000100099|ENST00000398145|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7379760742188	2	521.739696	1041.46484	-1.3212	-0.00068931	-1.841	-0.00096051	-3.1622	-0.0016498	521.7386695751059	61.957	0.54448	61.957	61.605	62.149	0					25	14	2	0	0	0	0.50466	1	7181	7181		87.754	21.325	1	4682200	+		29664	21048	20449	20487	34123	34123		645			-0.054233980129538395
KAETSTSTAM	10	Oxidation (M)	_KAETSTSTAM(Oxidation (M))_		KAETSTSTAM(1)		KAETSTSTAM(77)	0	0	1			REV__ENSG00000100099|ENST00000398145|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7379150390625	2	521.739696	1041.46484	-0.8712	-0.00045454	-2.512	-0.0013106	-3.3833	-0.0017652	521.7383387166662	61.867	0.54029	61.93	61.582	62.122	0.062767					26	14	2	0	0	0	0.60198	1	7092	7092		76.774	10.345	1	4645100	+		29665	21048	20449	20487	34124	34124		645			-0.054233980129538395
KAETSTSTAM	10	Oxidation (M)	_KAETSTSTAM(Oxidation (M))_					0	0	1			REV__ENSG00000100099|ENST00000398145|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	521.739696	1041.46484	-0.8712	-0.00045454	-2.512	-0.0013106	-3.3833	-0.0017652	521.7383387166662	61.867	0.54029	61.93	61.582	62.122	0.062767	-0.030951	-0.0001924	NaN	87.754	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4645100	+		29666	21048	20449	20487				645			-0.054233980129538395
KAEVQLSCCCA	11	Carbamidomethyl (C)	_KAEVQLSCCC(Carbamidomethyl (C))A_	KAEVQLSC(0.183)C(0.183)C(0.633)A		KAEVQLSC(-5.4)C(-5.4)C(5.4)A		0	1	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.2628784179688	2	606.264501	1210.51445	-0.63784	-0.0003867	-2.0868	-0.0012652	-2.7247	-0.0016519	606.2630648036746	32.061	0.76892	31.824	31.57	32.339	-0.23667					31	17	3	0	0	0	0.47044	1	2184	2184		78.264	19.482	3	1170500			29667	5022	20450	20488	34125	34125	62				-0.0823872960013432
KAEVQLSCCCA	11	Carbamidomethyl (C)	_KAEVQLSCCC(Carbamidomethyl (C))A_	KAEVQLSC(0.218)C(0.022)C(0.76)A		KAEVQLSC(-5.4)C(-15)C(5.4)A		0	1	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.2632446289062	2	606.264501	1210.51445	-0.6093	-0.0003694	-2.093	-0.0012689	-2.7023	-0.0016383	606.2630206780625	31.998	0.67604	31.84	31.569	32.245	-0.15772					27	15	3	0	0	0	0.25451	1	2160	2160		93.598	36.877	3	1147200			29668	5022	20450	20488	34126	34126	62				-0.0823872960013432
KAFDRPSLF	9	Unmodified	_KAFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7943725585938	2	540.795466	1079.57638	0.55985	0.00030276	-1.0256	-0.00055463	-0.46574	-0.00025187	540.794645841496	51.4	0.79163	51.288	50.973	51.765	-0.11163					36	13	4	0	0	0	0.33603	1	5274	5274		70.816	12.586	1	1676600			29669	10843	20451	20489	34127	34127					0.039774491971684256
KAFDRPSLF	9	Unmodified	_KAFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7943115234375	2	540.795466	1079.57638	0.23791	0.00012866	-1.2787	-0.00069153	-1.0408	-0.00056287	540.7947469764998	51.474	0.87141	51.29	50.981	51.852	-0.18404					39	17	4	0	0	0	0.20652	1	5286	5286		88.177	0.4805	1	1384800			29670	10843	20451	20489	34128	34128					0.039774491971684256
KAFDRPSLF	9	Unmodified	_KAFDRPSLF_					0	0	0		ENSG00000249709|ENST00000339282|ZNF564;ENST00000593682.1_1_19:12637262-12688404:-|nuORF	ENSG00000249709|ENST00000339282|ZNF564	ENSG00000249709|ENST00000339282|ZNF564	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	540.795466	1079.57638	-1.4355	-0.00077631	0.95497	0.00051644	-0.48052	-0.00025987	540.7958004722778	51.64	0.8212	51.369	51.084	51.905	-0.27079	0.053364	0.0010995	NaN	88.177	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1481000			29671	10843	20451	20489							0.039774491971684256
KAFDYPSLF	9	Unmodified	_KAFDYPSLF_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.2765502929688	2	544.276575	1086.5386	-0.50565	-0.00027521	0.55787	0.00030364	0.05222	2.8422E-05	544.2766548538738	73.053	1.2821	72.776	72.24	73.522	-0.2769					74	30	4	0	0	0	0.37611	1	8571	8571		67.494	1.0644	1	1865500			29672	10147	20452	20490	34129	34129					-0.0012106178830890713
KAFDYPSLF	9	Unmodified	_KAFDYPSLF_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.276611328125	2	544.276575	1086.5386	-0.40829	-0.00022222	0.41452	0.00022561	0.0062252	3.3882E-06	544.2765599278088	73.044	1.1425	72.779	72.343	73.485	-0.26479					70	27	4	0	0	0	0.2101	1	8585	8585		87.696	18.91	1	1851900			29673	10147	20452	20490	34130	34130					-0.0012106178830890713
KAFDYPSLF	9	Unmodified	_KAFDYPSLF_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	ENSG00000198551|ENST00000361113|ZNF627	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.2757568359375	2	544.276575	1086.5386	-1.0167	-0.00055335	0.91763	0.00049944	-0.099049	-5.391E-05	544.2768795643359	72.867	1.1025	72.669	72.206	73.308	-0.1981					69	26	4	0	0	0	0.17845	1	8541	8541		93.143	36.422	1	1796900			29674	10147	20452	20490	34131	34131					-0.0012106178830890713
KAFELELSW	9	Unmodified	_KAFELELSW_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000557290.1_1_14:58737043-58738610:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.795166015625	2	561.795132	1121.57571	0.4121	0.00023152	-1.3627	-0.00076554	-0.95057	-0.00053403	561.7946921278822	78.336	0.76761	78.105	77.709	78.476	-0.23141					56	17	5	0	0	0	0.03666	1	9343	9343		136.27	58.004	1	1087000			29675	2218	20453	20491	34132	34132					0.01978609757452432
KAFELELSW	9	Unmodified	_KAFELELSW_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000557290.1_1_14:58737043-58738610:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.7951049804688	2	561.795132	1121.57571	-0.19875	-0.00011166	-0.33529	-0.00018837	-0.53405	-0.00030003	561.794938833752	78.222	0.72897	78.066	77.741	78.47	-0.15592					47	16	4	0	0	0	0.025498	1	9310	9310		145.16	33.507	1	1206000			29676	2218	20453	20491	34133	34133					0.01978609757452432
KAFELELSW	9	Unmodified	_KAFELELSW_					0	0	0		nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3;ENST00000557290.1_1_14:58737043-58738610:+|nuORF	nc|ENSG00000100567|P25788-2|PSMA3	nc|ENSG00000100567|P25788-2|PSMA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	561.795132	1121.57571	-0.28909	-0.00016241	-0.50729	-0.00028499	-0.79638	-0.00044741	561.7950690286382	78.328	0.64507	78.074	77.826	78.471	-0.25471	-0.0078465	6.0835E-05	NaN	145.16	54	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886930			29677	2218	20453	20491							0.01978609757452432
KAFLGGLNW	9	Unmodified	_KAFLGGLNW_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.2892761230469	2	503.279452	1004.54435	0.20122	0.00010127	-0.28623	-0.00014405	-0.085012	-4.2785E-05	503.27910968255225	71.267	0.57435	70.995	70.702	71.276	-0.27203					19	12	2	0	0	0	0.29158	1	8316	8316		76.774	2.5191	1	1442500			29678	6366	20454	20492	34134	34134					0.042260815140252816
KAFLGGLNW	9	Unmodified	_KAFLGGLNW_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.2900390625	2	503.279452	1004.54435	-0.10195	-5.131E-05	0.37986	0.00019118	0.27791	0.00013987	503.27931884979165	71.204	0.63522	70.947	70.651	71.286	-0.25713					29	14	4	0	0	0	0.11092	1	8313	8313		108.09	33.832	1	1524300			29679	6366	20454	20492	34135	34135					0.042260815140252816
KAFLGGLNW	9	Unmodified	_KAFLGGLNW_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.29339599609375	2	503.279452	1004.54435	0.37487	0.00018866	0.0030157	1.5177E-06	0.37789	0.00019018	503.2790801540635	71.11	0.69005	70.897	70.607	71.297	-0.21333					31	15	3	0	0	0	0.11092	1	8286	8286		108.09	36.21	1	1507100			29680	6366	20454	20492	34136	34136					0.042260815140252816
KAFPFHIIF	9	Unmodified	_KAFPFHIIF_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3206176757812	2	560.32112	1118.62769	-0.23016	-0.00012896	-0.06723	-3.767E-05	-0.29739	-0.00016663	560.3210154227557	72.805	0.81176	72.529	72.24	73.051	-0.2769					44	18	3	0	0	0	0.088511	3	8553	8529;8542;8553		114.59	50.379	1	1544800			29681	1247	20455	20493	34137;34138;34139	34139					0.07311817961885936
KAFPFHIIF	9	Unmodified	_KAFPFHIIF_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3203125	2	560.32112	1118.62769	-0.038457	-2.1549E-05	-0.31817	-0.00017828	-0.35663	-0.00019983	560.3208456952806	72.851	0.71796	72.586	72.3	73.017	-0.26479					37	14	3	0	0	0	0.049708	3	8544	8544;8556;8570		128.82	52.042	1	1857200			29682	1247	20455	20493	34140;34141;34142	34140					0.07311817961885936
KAFPFHIIF	9	Unmodified	_KAFPFHIIF_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3209228515625	2	560.32112	1118.62769	-0.68846	-0.00038576	0.37007	0.00020736	-0.31839	-0.0001784	560.3213419714006	72.621	1.05	72.423	71.869	72.919	-0.19811					45	23	3	0	0	0	0.20304	2	8514	8514;8527		88.643	30.832	1	1658900			29683	1247	20455	20493	34143;34144	34143					0.07311817961885936
KAFPIVGEP	9	Unmodified	_KAFPIVGEP_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-3|PTPN22;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2900085449219	2	479.273835	956.533118	0.23867	0.00011439	4.1113	0.0019704	4.35	0.0020848	479.2760082384549	25.605	0.21252	25.685	25.622	25.835	0.08009					5	4	2	0	0	0	0.024487	1	1180	1180		24.203	0	1	28865			29684	4767	20456	20494	34145	34145					0.0531125941990922
KAFPIVGEPL	10	Unmodified	_KAFPIVGEPL_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-3|PTPN22;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.773193359375	2	535.815867	1069.61718	-0.56563	-0.00030307	-1.7606	-0.00094334	-2.3262	-0.0012464	535.8153235093906	41.613	0.17182	41.636	41.498	41.67	0.023006					7	4	2	0	0	0	0.03519	1	3700	3700		54.776	13.35	1	81564			29685	4767	20457	20495	34146	34146					0.08515790516798916
KAFRLSTYLI	10	Unmodified	_KAFRLSTYLI_					0	0	0		nc|ENSG00000136870|O75820-3|ZNF189;nc|ENSG00000136870|O75820-4|ZNF189;nc|ENSG00000136870|O75820-2|ZNF189;ENSG00000136870|ENST00000339664|ZNF189	nc|ENSG00000136870|O75820-3|ZNF189	nc|ENSG00000136870|O75820-3|ZNF189	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.21484375	3	404.576408	1210.70739	1.7989	0.0007278	3.9766	0.0016088	5.7755	0.0023366	404.57803024459196	28.359	0.3661	28.44	28.167	28.533	0.080811					10	8	2	0	0	0	0.03519	1	1574	1574		45.022	16.941	1	46984			29686	5059	20458	20496	34147	34147					0.11046839845221257
KAFSRCSSL	9	Unmodified	_KAFSRCSSL_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ENST00000571720.2_1_16:68596924-68598598:+|nuORF	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8031311035156	2	499.758027	997.5015	-1.1733	-0.00058639	1.2215	0.00061046	0.048177	2.4077E-05	499.758467866379	36.045	0.48234	36.003	35.726	36.208	-0.042454					36	13	3	0	0	0	0.023061	1	2839	2839		69.628	0	1	1245100			29687	9385	20459	20497	34148	34148					0.002649433943133772
KAFSTRMLT	9	Oxidation (M)	_KAFSTRM(Oxidation (M))LT_		KAFSTRM(1)LT		KAFSTRM(96)LT	0	0	1			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7730102539062	2	535.786784	1069.55902	-0.29295	-0.00015696	3.6284	0.0019441	3.3355	0.0017871	535.7890039930471	41.45	0.21815	41.45	41.36	41.579	0					7	5	2	0	0	0	0.022587	1	3752	3752		96.19	8.494	1	172940	+		29688	28207	20460	20498	34149	34149		835			0.02701785599856521
KAFTHYSTY	9	Unmodified	_KAFTHYSTY_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.269287109375	2	559.269281	1116.52401	-0.30525	-0.00017072	0.37534	0.00020992	0.070091	3.92E-05	559.2693517811207	33.058	0.68664	32.827	32.586	33.273	-0.23107					51	16	4	0	0	0	0.014034	2	2334	2324;2334		166.68	73.483	1	1275200			29689	10038	20461	20499	34150;34151	34151					-0.029591339364287705
KAFTHYSTY	9	Unmodified	_KAFTHYSTY_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2689819335938	2	559.269281	1116.52401	-0.13921	-7.7854E-05	0.32173	0.00017994	0.18253	0.00010208	559.269316623452	33.198	0.63475	32.998	32.73	33.365	-0.20019					43	15	4	0	0	0	0.043667	1	2347	2347		131.03	43.277	1	1629000			29690	10038	20461	20499	34152	34152					-0.029591339364287705
KAFTHYSTY	9	Unmodified	_KAFTHYSTY_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;nc|ENSG00000197714|Q14592-2|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.268798828125	2	559.269281	1116.52401	-0.75989	-0.00042499	0.93443	0.0005226	0.17453	9.7611E-05	559.2696089251857	32.986	0.76265	32.821	32.516	33.278	-0.16565					54	18	4	0	0	0	0.015901	2	2297	2297;2309		157.33	77.878	1	1406500			29691	10038	20461	20499	34153;34154	34153					-0.029591339364287705
KAFVFLLSW	9	Unmodified	_KAFVFLLSW_					0	0	0		ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000183780|Q8IY50|SLC35F3;nc|ENSG00000151812|A4IF30-2|SLC35F4;ENSG00000151812|ENST00000556826|SLC35F4;nc|ENSG00000151812|A4IF30|SLC35F4	ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000151812|A4IF30-2|SLC35F4	ENSG00000183780|ENST00000366618|SLC35F3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.8168334960938	2	555.820953	1109.62735	-0.41302	-0.00022956	-3.407	-0.0018937	-3.82	-0.0021232	555.8188999802968	60.609	0.679	60.403	60.131	60.81	-0.20599					38	16	4	0	0	0	0.59099	1	6759	6759		53.351	7.3995	1	1239500			29692	9276;6232	20462	20500	34155	34155					0.07692398242056697
KAGATPPNL	9	Unmodified	_KAGATPPNL_					0	0	0			REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7480773925781	2	434.747985	867.481417	-0.20708	-9.0027E-05	0.081859	3.5588E-05	-0.12522	-5.4439E-05	434.7481411347547	65.246	1.5339	65.246	64.69	66.224	0					145	41	5	0	0	0	0.03849	9	7685	7677;7685;7697;7710;7722;7734;7746;7758;7770		134.81	14.19	1	102340000	+		29693	35271	20463	20501	34156;34157;34158;34159;34160;34161;34162;34163;34164	34157					0.0423751572599258
KAGATPPNL	9	Unmodified	_KAGATPPNL_					0	0	0			REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7480773925781	2	434.747985	867.481417	-0.39117	-0.00017006	0.26586	0.00011558	-0.12531	-5.4476E-05	434.74823731018006	65.55	1.4355	65.278	64.786	66.221	-0.27283					145	38	5	0	0	0	0.067814	4	7709	7697;7709;7757;7782		122.18	25.986	1	100810000	+		29694	35271	20463	20501	34165;34166;34167;34168	34166					0.0423751572599258
KAGATPPNL	9	Unmodified	_KAGATPPNL_					0	0	0			REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7483825683594	2	434.747985	867.481417	0.16778	7.2943E-05	-0.27376	-0.00011901	-0.10597	-4.6072E-05	434.7479913700864	65.234	1.4639	65.272	64.78	66.244	0.037384					144	39	5	0	0	0	0.067814	5	7674	7601;7613;7638;7674;7686		122.18	22.366	1	104280000	+		29695	35271	20463	20501	34169;34170;34171;34172;34173	34172					0.0423751572599258
KAGEQATYESD	11	Unmodified	_KAGEQATYESD_					0	0	0			REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.2474365234375	3	400.17893	1197.51496	3.0745	0.0012304	1.0305	0.0004124	4.1051	0.0016428	400.17953876478435	32.86	0.27276	32.923	32.766	33.039	0.062885					9	6	2	0	0	0	0.024732	1	2256	2256		12.433	4.3985	1	46126	+		29696	34431	20464	20502	34174	34174					-0.0758957208342963
KAGIIQDTW	9	Unmodified	_KAGIIQDTW_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8308715820312	2	516.279649	1030.54475	-0.03168	-1.6356E-05	-0.2169	-0.00011198	-0.24858	-0.00012834	516.2793317115157	53.976	2.2776	53.731	52.456	54.733	-0.2453					126	64	3	0	0	0	0.023061	1	5671	5671		90.37	19.074	1	16578000			29697	4149	20465	20503	34175	34175					0.030694564432451443
KAGIIQDTW	9	Unmodified	_KAGIIQDTW_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	516.279649	1030.54475	-0.2252	-0.00011627	-0.11223	-5.7944E-05	-0.33744	-0.00017421	516.2794113438769	53.885	1.5309	53.688	53.126	54.657	-0.19739					114	43	5	0	0	0	0.023239	1	5657	5657		74.255	2.8771	1	15747000			29698	4149	20465	20503	34176	34176					0.030694564432451443
KAGKKLPKN	9	Unmodified	_KAGKKLPKN_					0	0	0			REV__nc|ENSG00000149554|O14757-2|CHEK1	REV__nc|ENSG00000149554|O14757-2|CHEK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2893981933594	2	492.321651	982.62875	-0.33379	-0.00016433	-0.0058642	-2.8871E-06	-0.33966	-0.00016722	492.3216164271219	22.412	0.51932	22.337	22.082	22.602	-0.075296					26	10	3	0	0	0	0.024523	1	779	779		29.15	10.825	1	117000	+		29699	24687	20466	20504	34177	34177					0.136740323308004
KAGKRLPS	8	Unmodified	_KAGKRLPS_					0	0	0		ENSG00000183747|ENST00000573854|ACSM2A;ENSG00000066813|ENST00000329697|ACSM2B	ENSG00000183747|ENST00000573854|ACSM2A	ENSG00000183747|ENST00000573854|ACSM2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7845458984375	2	428.771794	855.529036	-0.72484	-0.00031079	2.7888	0.0011958	2.064	0.00088498	428.7727463877471	26.1	0.21104	25.936	25.798	26.009	-0.16331					9	6	2	0	0	0	0.027866	1	1281	1281		12.959	0	1	388400			29700	1345	20467	20505	34178	34178					0.09549214716855658
KAGLGVNIVG	10	Unmodified	_KAGLGVNIVG_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.25653076171875	2	464.284734	926.554916	-0.096921	-4.4999E-05	0.35271	0.00016376	0.25579	0.00011876	464.2846088488138	54.924	0.65876	54.773	54.541	55.199	-0.15036					41	18	3	0	0	0	0.03519	1	5974	5974		25.574	1.3713	1	1163200			29701	1714	20468	20506	34179	34179					0.0887006416847953
KAGNLRPPQVK	11	Unmodified	_KAGNLRPPQVK_					0	0	0			REV__ENSG00000136932|ENST00000375119|TRMO	REV__ENSG00000136932|ENST00000375119|TRMO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3651123046875	2	604.367121	1206.71969	-0.63259	-0.00038232	0.014142	8.5468E-06	-0.61845	-0.00037377	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	1.0022	1	12975	12975		34.173	10.65	1	4804600	+		29702	23708	20469	20507	34180	34180					0.12459876308253115
KAGPTRPI	8	Unmodified	_KAGPTRPI_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.2406311035156	2	420.25852	838.502486	-0.9464	-0.00039773	1.6961	0.00071278	0.74966	0.00031505	420.25790157744296	37.542	0.3914	37.323	37.152	37.544	-0.2195					18	9	3	0	0	0	0.027866	1	3029	3029		37.159	10.363	1	94128	+		29703	26015	20470	20508	34181	34181					0.07677525825499742
KAGQTVTIW	9	Unmodified	_KAGQTVTIW_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2823486328125	2	502.282192	1002.54983	0.82259	0.00041317	-1.0317	-0.0005182	-0.20911	-0.00010503	502.281579407372	51.456	0.94162	51.345	50.934	51.876	-0.11163					62	24	4	0	0	0	0.12914	2	5298	5273;5298		104.06	18.934	1	5393500			29704	3286	20471	20509	34182;34183	34183					0.048657603058586574
KAGQTVTIW	9	Unmodified	_KAGQTVTIW_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2821960449219	2	502.282192	1002.54983	-1.3762	-0.00069122	1.0602	0.00053252	-0.31596	-0.0001587	502.282597619088	51.722	1.1507	51.453	51.049	52.2	-0.26903					73	30	4	0	0	0	0.091713	3	5314	5302;5314;5326		113.41	17.364	1	6042500			29705	3286	20471	20509	34184;34185;34186	34185					0.048657603058586574
KAGQTVTIW	9	Unmodified	_KAGQTVTIW_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2821350097656	2	502.282192	1002.54983	0.74208	0.00037273	-1.1888	-0.00059713	-0.44675	-0.00022439	502.28146981546996	51.51	1.0538	51.326	50.981	52.035	-0.18404					73	27	4	0	0	0	0.067814	2	5291	5291;5305		122.18	25.986	1	5238100			29706	3286	20471	20509	34187;34188	34187					0.048657603058586574
KAGQVVTIW	9	Unmodified	_KAGQVVTIW_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2925720214844	2	501.292559	1000.57057	-0.56502	-0.00028324	-0.3457	-0.0001733	-0.91072	-0.00045654	501.2925730983912	57.332	1.441	57.165	56.323	57.764	-0.1672					184	37	9	0	0	0	0.072054	7	6274	6229;6238;6250;6262;6274;6287;6300		120.62	35.705	1	59040000			29707	6839	20472	20510	34189;34190;34191;34192;34193;34194;34195	34193					0.07030350685522535
KAGQVVTIW	9	Unmodified	_KAGQVVTIW_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2923889160156	2	501.292559	1000.57057	0.12039	6.035E-05	-0.68795	-0.00034487	-0.56756	-0.00028452	501.2922220994778	57.369	1.5267	57.167	56.482	58.008	-0.20209					73	40	2	0	0	0	0.072054	7	6255	6235;6244;6255;6267;6279;6304;6317		120.62	44.625	1	59749000			29708	6839	20472	20510	34196;34197;34198;34199;34200;34201;34202	34198					0.07030350685522535
KAGQVVTIW	9	Unmodified	_KAGQVVTIW_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.292559	1000.57057	-0.23278	-0.00011669	1.2098	0.00060645	0.97699	0.00048976	501.2928274959253	56.801	0.39494	56.801	56.643	57.038	0	-0.19725	0.001849	NaN	120.62	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137430			29709	6839	20472	20510							0.07030350685522535
KAGQVVTIW	9	Unmodified	_KAGQVVTIW_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.292559	1000.57057	-0.2017	-0.00010111	-1.1613	-0.00058217	-1.363	-0.00068328	501.7926244390192	57.025	0.33453	56.861	56.71	57.045	-0.16431	-0.13766	-0.00052823	NaN	120.62	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102740			29710	6839	20472	20510							0.07030350685522535
KAGTLRKVL	9	Unmodified	_KAGTLRKVL_					0	0	0			REV__nc|ENSG00000011258|Q05BQ5-3|MBTD1	REV__nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.305419921875	2	493.329476	984.6444	-0.46964	-0.00023169	-1.3059	-0.00064422	-1.7755	-0.00087591	493.3290189878647	69.244	0.26234	69.259	69.053	69.316	0.015129					14	6	3	0	0	0	0.024506	1	8255	8255		23.042	1.0826	1	509570	+		29711	19922	20473	20511	34203	34203					0.15146318847837392
KAGVLRRLP	9	Unmodified	_KAGVLRRLP_					0	0	0			REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF	REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7596130371094	2	505.335093	1008.65563	0.056428	2.8515E-05	0.90303	0.00045633	0.95945	0.00048485	505.33507777897995	107.42	0.50556	107.42	106.96	107.47	0.0018311					29	13	3	0	0	0	0.024541	1	13659	13659		17.365	0	1	294720	+		29712	35725	20474	20512	34204	34204					0.15165140941985555
KAGYYDDSL	9	Unmodified	_KAGYYDDSL_					0	0	0			REV__ENSG00000082458|ENST00000374360|DLG3	REV__ENSG00000082458|ENST00000374360|DLG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7093505859375	2	516.237647	1030.46074	-0.64054	-0.00033067	3.652	0.0018853	3.0114	0.0015546	516.2393631026245	29.811	1.943	29.639	28.893	30.836	-0.17258					110	45	3	0	0	0	0.024405	1	1905	1905		44.117	3.5442	1	394850	+		29713	20695	20475	20513	34205	34205					-0.053271194443368586
KAHDIKKVL	9	Unmodified	_KAHDIKKVL_					0	0	0			REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7594604492188	2	526.334759	1050.65496	-0.82791	-0.00043576	-0.28122	-0.00014802	-1.1091	-0.00058378	526.3344806022199	57.367	0.43913	57.2	56.967	57.406	-0.1672					13	11	2	0	0	0	0.024541	1	6252	6252		25.574	9.1009	1	117660	+		29714	20661	20476	20514	34206	34206					0.13166301502246824
KAHDIKKVL	9	Unmodified	_KAHDIKKVL_					0	0	0			REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.759033203125	2	526.334759	1050.65496	0.064465	3.393E-05	-1.2492	-0.00065751	-1.1848	-0.00062358	526.3342338050404	57.394	0.29352	57.192	57.064	57.358	-0.20209					11	7	2	0	0	0	0.024541	1	6256	6256		30.318	12.953	1	111930	+		29715	20661	20476	20514	34207	34207					0.13166301502246824
KAHHVKTG	8	Unmodified	_KAHHVKTG_					0	0	0		ENSG00000198673|ENST00000416284|TAFA2	ENSG00000198673|ENST00000416284|TAFA2	ENSG00000198673|ENST00000416284|TAFA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.25244140625	2	439.253769	876.492984	-0.43149	-0.00018953	-1.4504	-0.00063711	-1.8819	-0.00082665	439.2526196526615	89.96	1.6578	89.96	88.978	90.636	0					92	39	4	0	0	0	1.0574	1	11379	11379		27.882	1.0861	1	2093000			29716	10165	20477	20515	34208	34208					0.04979757540002083
KAIAAKRAQ	9	Unmodified	_KAIAAKRAQ_					0	0	0			REV__ENSG00000180660|ENST00000379919|MAB21L1	REV__ENSG00000180660|ENST00000379919|MAB21L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7928161621094	2	478.803626	955.592698	0.049162	2.3539E-05	3.2529	0.0015575	3.302	0.001581	478.80453287133236	54.071	0.67948	53.873	53.489	54.168	-0.19739					27	20	2	0	0	0	0.024457	1	5713	5713		21.96	0	1	188910	+		29717	27355	20478	20516	34209	34209					0.11312575153931448
KAICVLFY	8	Unmodified	_KAICVLFY_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2821350097656	2	478.767332	955.52011	0.70101	0.00033562	2.6933	0.0012894	3.3943	0.0016251	478.7685613813936	20.564	0.29693	20.368	20.236	20.533	-0.19577					9	5	2	0	0	0	0.027866	1	563	563		15.636	0	1	49212	+		29718	26217	20479	20517	34210	34210					0.040571050361450034
KAIDWVASL	9	Unmodified	_KAIDWVASL_					0	0	0		ENST00000468599.1_1_3:32806019-32806607:+|nuORF	ENST00000468599.1_1_3:32806019-32806607:+|nuORF	ENST00000468599.1_1_3:32806019-32806607:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7832336425781	2	501.784567	1001.55458	-0.65016	-0.00032624	-2.4667	-0.0012377	-3.1168	-0.001564	501.78345778123247	45.34	1.2688	45.191	44.796	46.065	-0.1488					99	36	4	0	0	0	0.37611	1	4369	4369		67.494	5.3863	1	6807700			29719	14878	20480	20518	34211	34211					0.05386644448606148
KAIDYIRFL	9	Unmodified	_KAIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.3351440429688	2	569.834591	1137.65463	-0.39559	-0.00022542	-0.13232	-7.5399E-05	-0.52791	-0.00030082	569.8343404852347	66.792	0.48212	66.569	66.295	66.778	-0.22374					25	16	2	0	0	0	0.14087	2	7681	7669;7681		101.46	29.582	1	1928700			29720	1476	20481	20519	34212;34213	34213					0.09130881782425604
KAIDYIRFL	9	Unmodified	_KAIDYIRFL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;ENST00000469356.3_1_17:17720899-17721766:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.8335571289062	2	569.834591	1137.65463	-0.38357	-0.00021857	-0.19132	-0.00010902	-0.57489	-0.00032759	569.8342584480588	66.776	0.40582	66.531	66.277	66.683	-0.24517					28	14	2	0	0	0	0.32064	1	7667	7667		72.879	8.672	1	1783900			29721	1476	20481	20519	34214	34214					0.09130881782425604
KAIEAALAAR	10	Unmodified	_KAIEAALAAR_					0	0	0		ENST00000494072.3_3_1:19209920-19216616:-|nuORF;nc|ENSG00000159423|P30038-2|ALDH4A1;nc|ENSG00000159423|P30038-3|ALDH4A1;ENSG00000159423|ENST00000375341|ALDH4A1	ENST00000494072.3_3_1:19209920-19216616:-|nuORF	ENST00000494072.3_3_1:19209920-19216616:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3066101074219	2	507.308741	1012.60293	0.0052672	2.6721E-06	-0.23408	-0.00011875	-0.22881	-0.00011608	507.30861996174235	41.458	0.9344	41.481	41.182	42.117	0.023006					62	26	4	0	0	0	0.83648	1	3666	3666		58.246	1.8125	1	6643100			29722	6746	20482	20520	34215	34215					0.09713138088511641
KAIEEWSL	8	Unmodified	_KAIEEWSL_					0	0	0			REV__ENSG00000110871|ENST00000288532|COQ5	REV__ENSG00000110871|ENST00000288532|COQ5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.25885009765625	2	488.260925	974.507297	-0.99007	-0.00048341	-3.8593	-0.0018844	-4.8494	-0.0023678	488.25903284729526	30.518	1.0424	30.592	30.129	31.171	0.074316					58	24	4	0	0	0	0.42327	1	1907	1907		94.006	0.86318	1	3378900	+		29723	21879	20483	20521	34216	34216					0.01902365177613774
KAIEKNVLF	9	Unmodified	_KAIEKNVLF_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.320556640625	2	531.321317	1060.62808	-0.28047	-0.00014902	-0.12343	-6.5583E-05	-0.40391	-0.0002146	531.3211103492738	43.169	0.87806	43.057	42.775	43.653	-0.11253					69	23	4	0	0	0	0.14181	2	3955	3932;3955		101.25	3.7799	1	5055300			29724	2948	20484	20522	34217;34218	34218					0.1001919289108173
KAIEKNVLF	9	Unmodified	_KAIEKNVLF_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3206787109375	2	531.321317	1060.62808	-0.94596	-0.00050261	0.42818	0.0002275	-0.51778	-0.00027511	531.3214326110068	43.355	0.9182	43.117	42.8	43.718	-0.23737					68	24	4	0	0	0	0.14181	2	3957	3957;3973		101.25	26.394	1	4966900			29725	2948	20484	20522	34219;34220	34219					0.1001919289108173
KAIEKNVLF	9	Unmodified	_KAIEKNVLF_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.31787109375	2	531.321317	1060.62808	-0.92116	-0.00048943	0.28215	0.00014991	-0.63901	-0.00033952	531.3213156194258	43.379	0.94795	43.153	42.833	43.781	-0.22597					68	25	4	0	0	0	0.18994	3	3947	3947;3958;3973		90.601	25.568	1	5175800			29726	2948	20484	20522	34221;34222;34223	34221					0.1001919289108173
KAIELLQEF	9	Unmodified	_KAIELLQEF_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344851.4_1_6:158659196-158659322:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8106079101562	2	545.810782	1089.60701	-0.46981	-0.00025643	0.42241	0.00023056	-0.047399	-2.5871E-05	545.810932390523	70.246	0.97826	69.979	69.327	70.306	-0.26725					53	23	4	0	0	0	0.012922	3	8162	8153;8162;8176		172.25	14.174	1	4171600			29727	8496	20485	20523	34224;34225;34226	34225					0.06579182791574567
KAIELLQEF	9	Unmodified	_KAIELLQEF_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344851.4_1_6:158659196-158659322:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MSMS	OPSCC_40_ClassI_Rep-2	5	545.810546875	2	545.810782	1089.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.075	1	69.824	69.324	70.324	-0.25063								0	0	0	0.0023101	1	8154	8154		180.87	9.3377	1				29728	8496	20485	20523	34227	34227					0.06579182791574567
KAIELLQEF	9	Unmodified	_KAIELLQEF_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344851.4_1_6:158659196-158659322:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MSMS	OPSCC_40_ClassI_Rep-2	5	545.810791015625	2	545.810782	1089.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.138	1	69.888	69.388	70.388	-0.25063								0	0	0	0.0017564	1	8163	8163		185.72	14.187	1				29729	8496	20485	20523	34228	34228					0.06579182791574567
KAIELLQEF	9	Unmodified	_KAIELLQEF_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72;ENST00000344851.4_1_6:158659196-158659322:-|nuORF	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.810546875	2	545.810782	1089.60701	-0.28982	-0.00015819	-0.025859	-1.4114E-05	-0.31568	-0.0001723	545.8107023500814	70.131	0.81725	69.917	69.356	70.174	-0.21425					42	19	3	0	0	0	0.012922	2	8146	8135;8146		172.25	14.12	1	4397600			29730	8496	20485	20523	34229;34230	34230					0.06579182791574567
KAIFSKVMV	9	Unmodified	_KAIFSKVMV_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.8089294433594	2	511.806988	1021.59942	-0.56884	-0.00029114	3.9245	0.0020086	3.3556	0.0017174	511.80887386620736	22.161	0.84537	21.975	21.569	22.415	-0.18539					38	17	4	0	0	0	0.77768	1	761	761		40.778	2.9666	1	601200			29731	1756	20486	20524	34231	34231					0.08948751990305936
KAIHMKLTD	9	Unmodified	_KAIHMKLTD_					0	0	0			REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3289794921875	2	528.797152	1055.57975	0.61481	0.00032511	3.5281	0.0018656	4.1429	0.0021907	529.2993432085844	77.541	0.29955	77.298	77.148	77.447	-0.24232					9	6	2	0	0	0	0.024477	1	9251	9251		27.882	7.8855	1	157440	+		29732	25578	20487	20525	34232	34232					0.05418375979525081
KAIKEKEYE	9	Unmodified	_KAIKEKEYE_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.31103515625	2	569.311146	1136.60774	-1.0374	-0.00059058	-0.63044	-0.00035892	-1.6678	-0.0009495	569.3107065020649	38.943	1.2159	38.778	38.476	39.692	-0.16458					88	32	4	0	0	0	0.51687	1	3257	3257		58.23	8.7884	1	9764300			29733	2053	20488	20526	34233	34233					0.044899774406076176
KAIKEKEYE	9	Unmodified	_KAIKEKEYE_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.3106079101562	2	569.311146	1136.60774	-0.49878	-0.00028396	-0.95859	-0.00054574	-1.4574	-0.0008297	569.3105255305654	39.027	1.3972	38.804	38.457	39.854	-0.22311					94	36	4	0	0	0	0.54416	2	3279	3255;3279		56.434	5.2407	1	9012200			29734	2053	20488	20526	34234;34235	34235					0.044899774406076176
KAIKEKEYE	9	Unmodified	_KAIKEKEYE_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.3107299804688	2	569.311146	1136.60774	-0.03572	-2.0336E-05	-1.5083	-0.00085869	-1.544	-0.00087903	569.3102174226295	39.043	1.1811	38.817	38.483	39.664	-0.2257					92	31	5	0	0	0	0.34489	3	3247	3247;3270;3282		69.628	20.092	1	8860000			29735	2053	20488	20526	34236;34237;34238	34236					0.044899774406076176
KAINPINTF	9	Unmodified	_KAINPINTF_					0	0	0		ENST00000526423.1_1_11:46700589-46702208:-|nuORF;ENSG00000175220|ENST00000311956|ARHGAP1	ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENST00000526423.1_1_11:46700589-46702208:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.291748046875	2	509.290017	1016.56548	0.14069	7.1654E-05	-0.15248	-7.7656E-05	-0.011785	-6.0021E-06	509.2897913983514	53.17	1.6422	53.043	52.234	53.877	-0.12705					87	44	4	0	0	0	0.12602	3	5567	5545;5554;5567		104.75	25.296	1	3728100			29736	8541	20489	20527	34239;34240;34241	34241					0.057860468229023354
KAINPINTF	9	Unmodified	_KAINPINTF_					0	0	0		ENST00000526423.1_1_11:46700589-46702208:-|nuORF;ENSG00000175220|ENST00000311956|ARHGAP1	ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENST00000526423.1_1_11:46700589-46702208:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2926940917969	2	509.290017	1016.56548	0.021366	1.0881E-05	-0.29702	-0.00015127	-0.27565	-0.00014039	509.28962866043275	53.41	1.3773	53.152	52.326	53.704	-0.25838					87	36	4	0	0	0	0.057894	3	5586	5575;5586;5599		125.81	38.118	1	3795100			29737	8541	20489	20527	34242;34243;34244	34243					0.057860468229023354
KAINPINTF	9	Unmodified	_KAINPINTF_					0	0	0		ENST00000526423.1_1_11:46700589-46702208:-|nuORF;ENSG00000175220|ENST00000311956|ARHGAP1	ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENST00000526423.1_1_11:46700589-46702208:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.29290771484375	2	509.290017	1016.56548	-0.17749	-9.0392E-05	0.014619	7.4451E-06	-0.16287	-8.2947E-05	509.2898285219374	53.266	1.4452	53.076	52.389	53.834	-0.18982					94	39	4	0	0	0	0.077175	2	5575	5562;5575		118.74	31.964	1	3963900			29738	8541	20489	20527	34245;34246	34246					0.057860468229023354
KAIRKLDR	8	Unmodified	_KAIRKLDR_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7696533203125	2	500.324725	998.634898	-0.66685	-0.00033364	3.4429	0.0017226	2.7761	0.0013889	500.32653952884345	65.167	0.34839	65.167	64.944	65.292	0					19	9	3	0	0	0	0.027866	1	7725	7725		17.365	0	1	217680	+		29739	22533	20490	20528	34247	34247					0.1355255056231499
KAIRKLDR	8	Unmodified	_KAIRKLDR_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.324725	998.634898	-0.31534	-0.00015777	3.0076	0.0015048	2.6922	0.001347	500.32609338474293	65.456	0.74231	65.215	64.923	65.665	-0.24145	0.029976	-0.00054468	NaN	24.203	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543520	+		29740	22533	20490	20528							0.1355255056231499
KAIRKLDR	8	Unmodified	_KAIRKLDR_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.324725	998.634898	-1.4035	-0.00070222	4.0878	0.0020452	2.6842	0.001343	500.32654746824846	65.42	0.57584	65.207	64.971	65.547	-0.21327	0.021885	0.00053621	NaN	24.203	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469630	+		29741	22533	20490	20528							0.1355255056231499
KAIRKLDR	8	Unmodified	_KAIRKLDR_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.324725	998.634898	-0.83029	-0.00041541	3.4867	0.0017445	2.6564	0.0013291	500.32633346641387	65.428	0.57443	65.177	64.946	65.52	-0.25112	-0.0075905	-6.5264E-05	NaN	24.203	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509230	+		29742	22533	20490	20528							0.1355255056231499
KAISEHLN	8	Unmodified	_KAISEHLN_					0	0	0			REV__nc|ENSG00000146350|Q96NH3-4|TBC1D32	REV__nc|ENSG00000146350|Q96NH3-4|TBC1D32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.26947021484375	2	456.250892	910.48723	-0.24449	-0.00011155	1.0955	0.00049983	0.85102	0.00038828	456.25116645938357	25.559	0.94857	25.559	25.135	26.083	0					37	22	2	0	0	0	0.027866	1	1221	1221		71.296	0	1	222600	+		29743	24478	20491	20529	34248	34248					0.02840614237675254
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.26971435546875	2	456.269084	910.523616	0.4589	0.00020938	0.13384	6.1065E-05	0.59273	0.00027045	456.26890151586844	25.477	0.8352	25.557	25.294	26.13	0.08009					47	19	3	0	0	0	0.29158	1	1154	1154		76.774	13.468	1	992140			29744	4449	20492	20530	34249	34249					0.06477491134364755
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	456.269084	910.523616	-0.28056	-0.00012801	0.53075	0.00024216	0.25019	0.00011415	456.2691046241075	25.549	0.95764	25.549	25.285	26.243	0	0.02887	1.2902E-05	NaN	76.774	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	932360			29745	4449	20492	20530							0.06477491134364755
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	456.269084	910.523616	-0.56019	-0.0002556	0.97298	0.00044394	0.41279	0.00018834	456.2692999521267	25.597	1.0712	25.563	25.121	26.192	-0.034395	0.043301	0.00041645	NaN	76.774	47	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811600			29746	4449	20492	20530							0.06477491134364755
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.269084	910.523616	-0.4919	-0.00022444	0.90222	0.00041165	0.41031	0.00018721	456.2693575453098	25.823	0.49599	25.593	25.39	25.886	-0.2302	0.073567	0.00035188	NaN	76.774	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148990			29747	4449	20492	20530							0.06477491134364755
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.269084	910.523616	-0.23428	-0.00010689	0.79848	0.00036432	0.5642	0.00025743	456.2692272038796	25.52	0.57863	25.349	25.081	25.659	-0.17078	-0.17026	0.00025722	NaN	76.774	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137620			29748	4449	20492	20530							0.06477491134364755
KAISGVHTV	9	Unmodified	_KAISGVHTV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.269084	910.523616	-0.36342	-0.00016582	0.31126	0.00014202	-0.052164	-2.3801E-05	456.2691752237922	25.678	0.46641	25.507	25.241	25.708	-0.17151	-0.013114	-0.00018739	NaN	76.774	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134190			29749	4449	20492	20530							0.06477491134364755
KAITRDVDK	9	Unmodified	_KAITRDVDK_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2407836914062	2	523.303655	1044.59276	-0.7287	-0.00038133	0.55108	0.00028838	-0.17762	-9.2947E-05	523.3038614259895	29.972	0.72249	29.795	29.443	30.165	-0.17706					39	16	4	0	0	0	0.024477	1	1915	1915		14.865	0	1	778370	+		29750	36887	20493	20531	34250	34250					0.07224530363282611
KAIWNVINW	9	Unmodified	_KAIWNVINW_					0	0	0		nc|ENSG00000291237|P04179-2|SOD2;ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2	nc|ENSG00000291237|P04179-2|SOD2	nc|ENSG00000291237|P04179-2|SOD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.3189086914062	2	572.319109	1142.62366	0.74505	0.0004264	-0.85224	-0.00048775	-0.10719	-6.1347E-05	572.3185114762834	79.537	0.75054	79.291	78.987	79.738	-0.2465					49	17	4	0	0	0	0.039744	2	9508	9508;9521		133.81	76.001	1	1013200			29751	18839	20494	20532	34251;34252	34251					0.05805728468158122
KAIWNVINW	9	Unmodified	_KAIWNVINW_					0	0	0		nc|ENSG00000291237|P04179-2|SOD2;ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2	nc|ENSG00000291237|P04179-2|SOD2	nc|ENSG00000291237|P04179-2|SOD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.3192138671875	2	572.319109	1142.62366	0.24871	0.00014234	-0.55067	-0.00031516	-0.30196	-0.00017282	572.3186434399109	79.465	0.78935	79.245	78.954	79.744	-0.21923					44	18	3	0	0	0	0.014013	1	9515	9515		166.78	98.298	1	1152000			29752	18839	20494	20532	34253	34253					0.05805728468158122
KAIWNVINW	9	Unmodified	_KAIWNVINW_					0	0	0		nc|ENSG00000291237|P04179-2|SOD2;ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2	nc|ENSG00000291237|P04179-2|SOD2	nc|ENSG00000291237|P04179-2|SOD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.3192138671875	2	572.319109	1142.62366	0.15271	8.74E-05	-0.40842	-0.00023375	-0.25571	-0.00014635	572.318724519448	79.363	0.96307	79.213	78.903	79.866	-0.15051					58	22	4	0	0	0	0.072054	1	9490	9490		120.62	62.391	1	1104200			29753	18839	20494	20532	34254	34254					0.05805728468158122
KAKANLIGW	9	Unmodified	_KAKANLIGW_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.8006896972656	2	500.800552	999.58655	-0.82236	-0.00041184	0.013531	6.7762E-06	-0.80882	-0.00040506	500.8004288168607	44.701	0.8016	44.456	44.15	44.952	-0.24449					50	20	4	0	0	0	0.43973	1	4201	4201		63.306	2.3343	1	3145000			29754	5868	20495	20533	34255	34255					0.08674056922427553
KAKAPLPPAET	11	Unmodified	_KAKAPLPPAET_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;ENST00000434366.5_1_2:165561593-165697754:-|nuORF;ENST00000483743.5_1_2:165600108-165698476:-|nuORF;ENST00000496396.1_1_2:165600108-165698346:-|nuORF;ENST00000480873.1_1_2:165600108-165630227:-|nuORF	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.7945556640625	2	561.829506	1121.64446	-0.77251	-0.00043402	0.45963	0.00025824	-0.31288	-0.00017579	561.8295991733471	52.329	0.38876	52.21	52.011	52.4	-0.11875					18	9	2	0	0	0	0.024778	1	5425	5425		29.17	0	1	288850			29755	18094	20496	20534	34256	34256					0.08850274057158458
KAKEDFLVYKL	11	Unmodified	_KAKEDFLVYKL_					0	0	0		GOLIM4|p.P574Qfs*24|1|0.52|ENSG00000173905|chr3:168024998-168024998|G/-|frameshift_variant;ENSG00000173905|ENST00000470487|GOLIM4	GOLIM4|p.P574Qfs*24|1|0.52|ENSG00000173905|chr3:168024998-168024998|G/-|frameshift_variant	GOLIM4|p.P574Qfs*24|1|0.52|ENSG00000173905|chr3:168024998-168024998|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9324951171875	3	451.930739	1352.77039	0.96808	0.00043751	3.4199	0.0015456	4.388	0.0019831	451.9321669232396	97.087	2.2013	96.951	95.725	97.926	-0.1367					165	50	4	0	0	0	1.0563	1	12050	12050		23.378	0.81632	1	596220			29756	8424	20497	20535	34257	34257					0.1081136084260379
KAKELKEHS	9	Unmodified	_KAKELKEHS_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2965087890625	2	535.303655	1068.59276	0.7195	0.00038515	2.9101	0.0015578	3.6296	0.001943	535.3049644511835	63.174	0.94407	63.229	62.931	63.875	0.054104					60	25	3	0	0	0	0.024313	1	7280	7280		42.864	0	1	2741700	+		29757	19290	20498	20536	34258	34258					0.061205303632732466
KAKELNAKV	9	Unmodified	_KAKELNAKV_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.80584716796875	2	500.811116	999.60768	0.34439	0.00017248	-0.54929	-0.00027509	-0.20489	-0.00010261	500.8107146826074	42.269	1.1212	42.269	41.954	43.075	0					97	31	5	0	0	0	0.48817	1	3867	3867		60.118	7.1816	1	6627600	+		29758	21094;36411	20499	20537	34259	34259					0.10786022231263814
KAKFQEKYQKS	11	Unmodified	_KAKFQEKYQKS_					0	0	0		ENSG00000104537|ENST00000419625|ANXA13;nc|ENSG00000104537|P27216-2|ANXA13	ENSG00000104537|ENST00000419625|ANXA13	ENSG00000104537|ENST00000419625|ANXA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.279541015625	3	462.257626	1383.75105	-0.18323	-8.4702E-05	-0.31154	-0.00014401	-0.49477	-0.00022871	462.257407024796	43.14	0.36363	43	42.846	43.21	-0.13929					13	9	2	0	0	0	0.024809	1	4003	4003		12.433	2.3289	1	173530			29759	2580	20500	20538	34260	34260					0.07452404551690961
KAKFQEKYQKS	11	Unmodified	_KAKFQEKYQKS_					0	0	0		ENSG00000104537|ENST00000419625|ANXA13;nc|ENSG00000104537|P27216-2|ANXA13	ENSG00000104537|ENST00000419625|ANXA13	ENSG00000104537|ENST00000419625|ANXA13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	462.257626	1383.75105	-0.26796	-0.00012387	-1.3292	-0.00061441	-1.5971	-0.00073828	462.2563890895438	42.938	0.36381	42.938	42.823	43.186	0	-0.075829	-0.00084294	NaN	12.433	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146250			29760	2580	20500	20538							0.07452404551690961
KAKGKKKKR	9	Unmodified	_KAKGKKKKR_					0	0	0			REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3	REV__nc|ENSG00000005175|Q9H6T3-2|RPAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3421020507812	2	536.377292	1070.74003	-0.66281	-0.00035552	0.2681	0.0001438	-0.39471	-0.00021171	536.3773248785994	27.203	0.20673	26.961	26.869	27.076	-0.24217					7	4	2	0	0	0	0.024541	1	1474	1474		7.1934	2.5116	1	62009	+		29761	19797	20501	20539	34261	34261					0.2074909175871653
KAKIGLIQF	9	Unmodified	_KAKIGLIQF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;ENST00000461540.2_1_2:62096624-62104153:-|nuORF	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3262634277344	2	509.326402	1016.63825	-0.15062	-7.6715E-05	0.25504	0.0001299	0.10442	5.3185E-05	509.3262846570867	56.655	0.86658	56.488	56.204	57.071	-0.1672					57	22	4	0	0	0	0.25032	1	6144	6144		82.305	2.3658	1	2547900			29762	3453	20502	20540	34262	34262					0.1305980061632681
KAKIGLIQF	9	Unmodified	_KAKIGLIQF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;ENST00000461540.2_1_2:62096624-62104153:-|nuORF	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.3262939453125	2	509.326402	1016.63825	0.10796	5.4989E-05	-0.10483	-5.3393E-05	0.0031337	1.5961E-06	509.32614637530816	56.726	0.85034	56.524	56.25	57.1	-0.20209					55	22	4	0	0	0	0.33245	1	6161	6161		71.296	2.811	1	2969900			29763	3453	20502	20540	34263	34263					0.1305980061632681
KAKIGLIQF	9	Unmodified	_KAKIGLIQF_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;ENST00000461540.2_1_2:62096624-62104153:-|nuORF	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.3251037597656	2	509.326402	1016.63825	0.26185	0.00013337	-0.32203	-0.00016402	-0.060175	-3.0649E-05	509.32604351936726	56.786	0.83481	56.561	56.269	57.104	-0.2248					54	21	4	0	0	0	0.27161	2	6169	6142;6169		79.451	8.0731	1	3021300			29764	3453	20502	20540	34264;34265	34265					0.1305980061632681
KAKKQLVAE	9	Unmodified	_KAKKQLVAE_					0	0	0			REV__nc|ENSG00000143748|O15381-5|NVL	REV__nc|ENSG00000143748|O15381-5|NVL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2853698730469	2	507.818941	1013.62333	-0.62002	-0.00031486	-0.15761	-8.0039E-05	-0.77763	-0.00039489	507.8187561422922	30.586	0.49763	30.66	30.42	30.917	0.074314					18	11	2	0	0	0	0.024405	1	1933	1933		35.618	0.41757	1	66946	+		29765	24276	20503	20541	34266	34266					0.11706308748318861
KAKKRPVN	8	Unmodified	_KAKKRPVN_					0	0	0			REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	REV__LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7643737792969	2	470.806168	939.597784	0.22265	0.00010483	-0.39313	-0.00018509	-0.17048	-8.0262E-05	470.805765581051	31.42	0.20061	31.489	31.366	31.567	0.06896					7	4	2	0	0	0	0.027866	1	2054	2054		12.207	0.69583	1	60260	+		29766	24389	20504	20542	34267	34267					0.12556879016551648
KAKLCRQLV	9	Unmodified	_KAKLCRQLV_					0	0	0		ENST00000379565.7_1_X:20190943-20193328:-|nuORF	ENST00000379565.7_1_X:20190943-20193328:-|nuORF	ENST00000379565.7_1_X:20190943-20193328:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.349609375	2	529.828786	1057.64302	-0.76238	-0.00040393	-2.0587	-0.0010907	-2.8211	-0.0014947	529.8275121852575	53.334	0.60263	53.334	53.124	53.726	0					41	16	3	0	0	0	0.024487	1	5740	5740		31.955	12.595	1	754330			29767	13271	20505	20543	34268	34268					0.11650361487431837
KAKLLLGLL	9	Unmodified	_KAKLLLGLL_					0	0	0			REV__ENST00000256951.9_1_12:13368262-13368391:+|nuORF	REV__ENST00000256951.9_1_12:13368262-13368391:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.79791259765625	2	484.846971	967.679388	1.518	0.00073598	1.3947	0.00067622	2.9127	0.0014122	484.8481701127153	59.106	0.35888	58.919	58.648	59.007	-0.18705					15	9	2	0	0	0	0.024262	1	6670	6670		47.916	5.4411	1	285810	+		29768	29559	20506	20544	34269	34269					0.1942556165578253
KAKLVVIDE	9	Unmodified	_KAKLVVIDE_					0	0	0			REV__nc|ENSG00000205726|Q15811-5|ITSN1	REV__nc|ENSG00000205726|Q15811-5|ITSN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.800048828125	2	507.813325	1013.6121	-0.57071	-0.00028982	2.0157	0.0010236	1.445	0.00073379	507.8146218966504	31.072	0.19931	30.886	30.824	31.023	-0.18503					6	4	2	0	0	0	0.02435	1	2044	2044		60.972	9.6365	1	86410	+	+	29769	37088	20507	20545	34270	34270					0.10583486654172702
KAKLVVIDE	9	Unmodified	_KAKLVVIDE_					0	0	0			REV__nc|ENSG00000205726|Q15811-5|ITSN1	REV__nc|ENSG00000205726|Q15811-5|ITSN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8001403808594	2	507.813325	1013.6121	-0.42382	-0.00021522	0.12738	6.4685E-05	-0.29644	-0.00015053	507.81327939097474	31.178	0.11741	31.025	30.968	31.085	-0.15231					4	2	2	0	0	0	0.024477	1	2038	2038		44.117	9.9443	1	56723	+	+	29770	37088	20507	20545	34271	34271					0.10583486654172702
KAKPVTTNL	9	Unmodified	_KAKPVTTNL_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.2978515625	2	486.297842	970.581131	2.0291	0.00098676	-2.2578	-0.0010979	-0.22862	-0.00011118	486.2965623038374	24.791	0.60955	24.61	24.374	24.983	-0.18089					40	13	4	0	0	0	0.2101	1	1098	1098		87.696	13.441	1	814980			29771	8665	20508	20546	34272	34272					0.09466333339935318
KAKPVTTNL	9	Unmodified	_KAKPVTTNL_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.297842	970.581131	-0.69515	-0.00033805	0.48781	0.00023722	-0.20733	-0.00010083	486.298064310655	24.688	0.53506	24.688	24.474	25.009	0	0.025009	0.00066013	NaN	87.696	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117550			29772	8665	20508	20546							0.09466333339935318
KAKPVTTNL	9	Unmodified	_KAKPVTTNL_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.297842	970.581131	-1.2855	-0.00062514	0.9188	0.00044681	-0.36671	-0.00017833	486.29831097398903	24.741	0.53748	24.694	24.442	24.98	-0.047148	0.030535	0.0010793	NaN	87.696	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147470			29773	8665	20508	20546							0.09466333339935318
KAKPVTTNL	9	Unmodified	_KAKPVTTNL_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.297842	970.581131	-0.18134	-8.8187E-05	-0.2859	-0.00013903	-0.46724	-0.00022722	486.29770610668754	24.671	0.5495	24.75	24.455	25.005	0.078346	0.086551	-9.2379E-05	NaN	87.696	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167550			29774	8665	20508	20546							0.09466333339935318
KAKPVTTNL	9	Unmodified	_KAKPVTTNL_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.297842	970.581131	-0.43943	-0.00021369	0.31204	0.00015175	-0.12738	-6.1947E-05	486.29788822507027	24.945	0.65375	24.718	24.451	25.105	-0.22683	0.054636	0.00048917	NaN	87.696	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686790			29775	8665	20508	20546							0.09466333339935318
KAKPVTTNL	9	Unmodified	_KAKPVTTNL_					0	0	0		nc|ENSG00000176731|Q8N0T1-2|RBIS;ENST00000523245.1_1_8:86129602-86132627:-|nuORF;ENSG00000176731|ENST00000619594|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	nc|ENSG00000176731|Q8N0T1-2|RBIS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.297842	970.581131	-0.14197	-6.9039E-05	0.00067127	3.2644E-07	-0.1413	-6.8713E-05	486.29774924207493	24.694	0.6547	24.52	24.21	24.865	-0.17484	-0.14375	0.00018634	NaN	87.696	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	681280			29776	8665	20508	20546							0.09466333339935318
KAKQIYEEF	9	Unmodified	_KAKQIYEEF_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5;ENST00000469495.5_1_1:163081086-163122480:-|nuORF;nc|ENSG00000143248|O15539-2|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.306640625	2	578.305864	1154.59717	-0.14427	-8.3432E-05	-0.098202	-5.6791E-05	-0.24247	-0.00014022	578.3056282275285	41.889	1.303	41.766	41.421	42.724	-0.12299					105	34	5	0	0	0	0.14024	1	3716	3716		101.6	2.2258	1	4336100			29777	5624	20509	20547	34273	34273					0.02605994786199517
KAKQIYEEF	9	Unmodified	_KAKQIYEEF_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5;ENST00000469495.5_1_1:163081086-163122480:-|nuORF;nc|ENSG00000143248|O15539-2|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.3057861328125	2	578.305864	1154.59717	-0.9511	-0.00055003	0.72093	0.00041692	-0.23017	-0.00013311	578.3060799429791	42.082	0.87733	41.85	41.508	42.385	-0.23186					72	23	4	0	0	0	0.091713	2	3750	3750;3763		113.41	20.216	1	4578700			29778	5624	20509	20547	34274;34275	34274					0.02605994786199517
KAKREVSSW	9	Unmodified	_KAKREVSSW_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8038330078125	2	545.803823	1089.59309	0.15607	8.5183E-05	-0.35892	-0.0001959	-0.20286	-0.00011072	545.8035193980013	21.797	0.62058	21.62	21.35	21.971	-0.17721					33	12	4	0	0	0	0.6238	1	716	716		51.193	5.2204	1	342320			29779	7190	20510	20548	34276	34276					0.05187950083131909
KAKREVSSW	9	Unmodified	_KAKREVSSW_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.8036499023438	2	545.803823	1089.59309	-0.46934	-0.00025617	0.028376	1.5488E-05	-0.44096	-0.00024068	545.8037304879201	21.973	0.57346	21.782	21.516	22.089	-0.19072					31	11	4	0	0	0	0.72494	1	727	727		44.377	1.981	1	305540			29780	7190	20510	20548	34277	34277					0.05187950083131909
KAKREVSSW	9	Unmodified	_KAKREVSSW_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.8037719726562	2	545.803823	1089.59309	-1.148	-0.00062661	0.95383	0.0005206	-0.19422	-0.00010601	545.8042048564321	21.89	0.6256	21.688	21.373	21.999	-0.20199					30	12	3	0	0	0	0.33603	1	696	696		70.816	27.952	1	282580			29781	7190	20510	20548	34278	34278					0.05187950083131909
KAKRKRRV	8	Unmodified	_KAKRKRRV_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3062744140625	2	521.359434	1040.70431	0.36428	0.00018992	-2.2066	-0.0011504	-1.8423	-0.00096048	521.3594933717866	47.271	0.25587	47.118	46.94	47.196	-0.15301					16	6	4	0	0	0	0.027866	1	4711	4711		35.201	26.969	1	287450			29782	5284	20511	20549	34279	34279					0.18559054301726974
KAKRLCKR	8	Unmodified	_KAKRLCKR_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7953796386719	2	501.821295	1001.62804	0.18587	9.3275E-05	-1.0222	-0.00051297	-0.83633	-0.00041969	501.8206283861672	50.264	0.68994	50.345	49.919	50.609	0.080994					33	20	2	0	0	0	0.027866	1	5126	5126		30.504	0	1	333680	+		29783	19868	20512	20550	34280	34280					0.12728914410092784
KAKSTRNI	8	Unmodified	_KAKSTRNI_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.787841796875	2	459.279983	916.545414	-0.043351	-1.991E-05	-0.33619	-0.0001544	-0.37954	-0.00017431	459.2800566690514	92.644	1.1422	92.644	92.372	93.515	0					35	26	2	0	0	0	0.027866	1	11727	11727		26.693	5.746	1	466560			29784	7594	20513	20551	34281	34281					0.08380295882943756
KAKTLEIEA	9	Unmodified	_KAKTLEIEA_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7945861816406	2	501.795132	1001.57571	-0.086906	-4.3609E-05	-0.46263	-0.00023215	-0.54954	-0.00027576	501.79482640565107	50.297	0.75023	50.146	49.708	50.458	-0.1512					68	21	4	0	0	0	0.6504	1	5205	5205		49.442	0	1	9437100			29785	11058	20514	20552	34282	34282					0.07498609757453778
KAKVEETK	8	Unmodified	_KAKVEETK_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-4|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7669982910156	2	466.7742	931.533846	0.13761	6.4231E-05	4.0622	0.0018961	4.1998	0.0019603	466.77594899523143	87.225	0.465	87.225	86.941	87.406	0					16	10	2	0	0	0	0.027866	1	10938	10938		29.15	0.89528	1	132850			29786	2516	20515	20553	34283	34283					0.06534054068958994
KAKVKRSE	8	Unmodified	_KAKVKRSE_					0	0	0			REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7693786621094	2	473.295633	944.576714	-0.74814	-0.00035409	-1.0766	-0.00050957	-1.8248	-0.00086366	473.296722867791	30.069	0.3003	29.891	29.74	30.04	-0.17817					10	6	2	0	0	0	0.027866	1	1876	1876		23.042	5.6775	1	28749	+		29787	28784	20516	20554	34284	34284					0.1022086891704248
KAKVTGDEW	9	Unmodified	_KAKVTGDEW_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.268798828125	2	517.269281	1032.52401	-1.0749	-0.00055602	2.9856	0.0015444	1.9107	0.00098836	517.2706814517236	28.443	1.0719	28.198	27.593	28.665	-0.24524					52	25	3	0	0	0	0.19099	1	1619	1619		90.37	18.492	1	2173900			29788	2601	20517	20555	34285	34285					0.00904866063569898
KAKVTGDEW	9	Unmodified	_KAKVTGDEW_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2678833007812	2	517.269281	1032.52401	-0.64388	-0.00033306	0.56386	0.00029167	-0.080014	-4.1389E-05	517.2691487917895	27.979	0.80962	27.811	27.528	28.338	-0.16816					49	19	4	0	0	0	0.19099	1	1599	1599		90.37	12.106	1	1623500			29789	2601	20517	20555	34286	34286					0.00904866063569898
KAKVTGDEW	9	Unmodified	_KAKVTGDEW_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MSMS	OPSCC_40_ClassI_Rep-2	5	517.2678833007812	2	517.269281	1032.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.174	1	28.005	27.505	28.505	-0.16897								0	0	0	0.24781	1	1619	1619		71.877	3.0906	1				29790	2601	20517	20555	34287	34287					0.00904866063569898
KALAAGQLHI	10	Unmodified	_KALAAGQLHI_					0	0	0		nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.766357421875	2	511.311284	1020.60801	1.9767	0.0010107	-1.3205	-0.00067518	0.65619	0.00033552	511.30996395091773	24.356	0.78471	24.175	23.938	24.723	-0.18089					33	17	4	0	0	0	0.03519	1	1062	1062		63.306	15.391	1	257840			29791	18315	20518	20556	34288	34288					0.09853441951145214
KALAAGQLHI	10	Unmodified	_KALAAGQLHI_					0	0	0		nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.311284	1020.60801	-0.15644	-7.9988E-05	0.026133	1.3362E-05	-0.1303	-6.6626E-05	511.3111726656052	24.527	0.5934	24.312	23.999	24.592	-0.2151	0.086108	-3.9865E-05	NaN	63.306	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328620			29792	18315	20518	20556							0.09853441951145214
KALAAGQLHI	10	Unmodified	_KALAAGQLHI_					0	0	0		nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.311284	1020.60801	-0.28485	-0.00014565	0.74398	0.0003804	0.45913	0.00023476	511.31133656075093	24.365	0.59115	24.191	23.963	24.554	-0.17484	-0.035143	0.00069422	NaN	63.306	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283070			29793	18315	20518	20556							0.09853441951145214
KALEENNNF	9	Unmodified	_KALEENNNF_					0	0	0		ENSG00000197457|ENST00000370053|STMN3;nc|ENSG00000197457|Q9NZ72-2|STMN3;ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2	ENSG00000197457|ENST00000370053|STMN3;ENSG00000104435|ENST00000220876|STMN2	ENSG00000197457|ENST00000370053|STMN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7623901367188	2	539.76182	1077.50909	-0.37065	-0.00020006	0.95302	0.0005144	0.58238	0.00031434	539.7623109448098	34.191	1.9828	33.967	32.883	34.865	-0.22412					87	49	2	0	0	0	0.24031	2	2486	2486;2498		83.647	0	1	1914800			29794	10002;2572	20519	20557	34289;34290	34289					-0.02656625804434043
KALEENNNF	9	Unmodified	_KALEENNNF_					0	0	0		ENSG00000197457|ENST00000370053|STMN3;nc|ENSG00000197457|Q9NZ72-2|STMN3;ENSG00000104435|ENST00000220876|STMN2;nc|ENSG00000104435|Q93045-2|STMN2	ENSG00000197457|ENST00000370053|STMN3;ENSG00000104435|ENST00000220876|STMN2	ENSG00000197457|ENST00000370053|STMN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.7613525390625	2	539.76182	1077.50909	-1.9397	-0.001047	2.3977	0.0012942	0.45791	0.00024716	539.7631092353481	34.091	1.419	33.915	33.352	34.771	-0.17557					69	35	3	0	0	0	0.20652	1	2467	2467		88.177	0	1	1850300			29795	10002;2572	20519	20557	34291	34291					-0.02656625804434043
KALELDSNLY	10	Unmodified	_KALELDSNLY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.3092041015625	2	583.308603	1164.60265	0.089576	5.2251E-05	0.028578	1.667E-05	0.11815	6.8921E-05	583.3085129440694	58.883	0.71494	58.641	58.381	59.096	-0.24165					45	17	3	0	0	0	0.2497	1	6471	6471		114.86	27.104	1	2666300			29796	2185	20520	20558	34292	34292					0.026936735780054732
KALELDSNLY	10	Unmodified	_KALELDSNLY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	583.308603	1164.60265	-0.45607	-0.00026603	0.65587	0.00038257	0.19979	0.00011654	583.3088668479581	58.809	0.87718	58.621	58.223	59.1	-0.18795	0.017494	0.00019756	NaN	114.86	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2110900			29797	2185	20520	20558							0.026936735780054732
KALELDSNLY	10	Unmodified	_KALELDSNLY_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	583.308603	1164.60265	-0.58653	-0.00034213	0.78257	0.00045648	0.19604	0.00011435	583.3089299700154	58.73	0.68361	58.548	58.228	58.911	-0.18133	-0.055073	0.00034538	NaN	114.86	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2154400			29798	2185	20520	20558							0.026936735780054732
KALEQKLY	8	Unmodified	_KALEQKLY_					0	0	0		ENST00000533911.1_1_11:75154120-75160980:-|nuORF;ENST00000527322.5_1_11:75154120-75168815:-|nuORF;nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5;GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant;ENSG00000158555|ENST00000336898|GDPD5	ENST00000533911.1_1_11:75154120-75160980:-|nuORF	ENST00000533911.1_1_11:75154120-75160980:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2824401855469	2	496.792392	991.570232	0.17789	8.8373E-05	-1.9945	-0.00099087	-1.8166	-0.0009025	496.79119201268725	22.254	0.28333	22.065	21.863	22.147	-0.18894					7	5	2	0	0	0	0.027866	1	757	757		47.916	10.756	1	40040			29799	6685	20521	20559	34293	34293					0.0741093096565919
KALESLDLSSD	11	Unmodified	_KALESLDLSSD_					0	0	0			REV__GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant	REV__GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3425903320312	2	589.300975	1176.5874	-1.3419	-0.00079077	3.5002	0.0020627	2.1583	0.0012719	589.3029427359578	92.387	0.19749	92.379	92.236	92.434	-0.0082932					6	4	2	0	0	0	0.02475	1	11664	11664		35.152	10.633	1	38505	+		29800	36071	20522	20560	34294	34294					0.006167619901589205
KALETDKKDW	10	Unmodified	_KALETDKKDW_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.8876647949219	3	411.88731	1232.6401	-0.068317	-2.8139E-05	-0.11186	-4.6075E-05	-0.18018	-7.4214E-05	411.88719092166525	27.604	0.72605	27.362	27.119	27.845	-0.24217					50	16	4	0	0	0	0.73013	1	1556	1556		65.278	19.369	1	1221100			29801	8961	20523	20561	34295	34295					0.03308764843609424
KALETDKKDW	10	Unmodified	_KALETDKKDW_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.88720703125	3	411.88731	1232.6401	-0.57334	-0.00023615	0.48094	0.00019809	-0.092401	-3.8059E-05	411.88743722589396	27.468	0.75517	27.3	27.013	27.768	-0.16816					46	17	3	0	0	0	0.92842	1	1513	1513		52.167	4.9395	1	1460900			29802	8961	20523	20561	34296	34296					0.03308764843609424
KALETDKKDW	10	Unmodified	_KALETDKKDW_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.8872985839844	3	411.88731	1232.6401	-0.046234	-1.9043E-05	-0.13085	-5.3897E-05	-0.17709	-7.294E-05	411.88726121180815	27.56	0.70003	27.403	27.104	27.804	-0.15664					54	16	5	0	0	0	0.92842	2	1507	1507;1516		52.167	5.2122	1	1404200			29803	8961	20523	20561	34297;34298	34297					0.03308764843609424
KALEVFPEF	9	Unmodified	_KALEVFPEF_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.2919311523438	2	540.292225	1078.5699	-0.27055	-0.00014618	0.051261	2.7696E-05	-0.21929	-0.00011848	540.292161975076	72.238	1.0051	71.963	71.666	72.671	-0.2751					76	23	5	0	0	0	0.094442	3	8451	8451;8463;8475		112.41	35.637	1	6386700			29804	5942	20524	20562	34299;34300;34301	34299					0.03375511245803864
KALEVFPEF	9	Unmodified	_KALEVFPEF_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.29150390625	2	540.292225	1078.5699	0.07226	3.9042E-05	-0.38845	-0.00020988	-0.31619	-0.00017084	540.2919110563738	72.23	1.0886	71.968	71.638	72.727	-0.262					73	25	4	0	0	0	0.025498	2	8489	8477;8489		145.16	62.293	1	6020800			29805	5942	20524	20562	34302;34303	34303					0.03375511245803864
KALEVFPEF	9	Unmodified	_KALEVFPEF_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.2919921875	2	540.292225	1078.5699	-1.0669	-0.00057643	0.84145	0.00045463	-0.22544	-0.0001218	540.2926082133982	72.073	0.78352	71.867	71.497	72.281	-0.20613					62	18	5	0	0	0	0.071379	2	8435	8435;8445		120.87	44.094	1	6502400			29806	5942	20524	20562	34304;34305	34304					0.03375511245803864
KALEYVEAKS	10	Unmodified	_KALEYVEAKS_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;ENST00000478543.1_1_10:105204236-105205303:+|nuORF	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.3121948242188	2	569.311146	1136.60774	-0.03572	-2.0336E-05	-1.5083	-0.00085869	-1.544	-0.00087903	569.3102174226295	39.043	1.1811	38.817	38.483	39.664	-0.2257					92	31	5	0	0	0	0.80817	1	3258	3258		60.118	0	1	8860000			29807	6055	20525	20563	34306	34306					0.044899774406076176
KALFSVLN	8	Unmodified	_KALFSVLN_					0	0	0		nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT;nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT	nc|ENSG00000164362|O14746-3|TERT;nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2698059082031	2	446.268553	890.522553	-0.56936	-0.00025409	0.76989	0.00034358	0.20053	8.9489E-05	446.2687766010044	65.449	1.1266	65.176	64.825	65.951	-0.27282					68	30	4	0	0	0	0.89627	1	7731	7731		51.335	0	1	5525300			29808	18457;7269	20526	20564	34307	34307					0.07291276765465682
KALFSVLN	8	Unmodified	_KALFSVLN_					0	0	0		nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT;nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT	nc|ENSG00000164362|O14746-3|TERT;nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.2691650390625	2	446.268553	890.522553	-0.2923	-0.00013045	0.59588	0.00026592	0.30357	0.00013547	446.26869048453557	65.101	0.96535	65.138	64.854	65.82	0.037384					69	26	4	0	0	0	0.96769	1	7641	7641		42.396	0	1	4787000			29809	18457;7269	20526	20564	34308	34308					0.07291276765465682
KALFTLLLL	9	Unmodified	_KALFTLLLL_					0	0	0			REV__ENST00000558780.5_2_14:24649650-24651621:-|nuORF	REV__ENST00000558780.5_2_14:24649650-24651621:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2738647460938	2	516.346803	1030.67905	-0.70869	-0.00036593	2.8795	0.0014868	2.1708	0.0011209	516.3487720110755	45.219	0.0998	45.263	45.18	45.279	0.043877					4	2	2	0	0	0	0.024541	1	4312	4312		10.866	0	1	47218	+		29810	28188	20527	20565	34309	34309					0.16494141935959306
KALGQGKIK	9	Unmodified	_KALGQGKIK_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.80999755859375	2	471.808377	941.6022	0.53557	0.00025269	-0.75588	-0.00035663	-0.22031	-0.00010395	471.8078858995911	19.419	0.89003	19.258	18.639	19.529	-0.16079					30	17	3	0	0	0	0.85329	1	422	422		35.618	0.41757	1	272740	+		29811	26116	20528	20566	34310	34310					0.12906343439465218
KALHASQVL	9	Unmodified	_KALHASQVL_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.79022216796875	2	483.790184	965.565815	-0.049389	-2.3894E-05	-0.69177	-0.00033467	-0.74116	-0.00035856	483.7898328084128	45.911	1.6573	45.911	45.31	46.967	0					115	46	4	0	0	0	0.53979	1	4521	4521		56.721	0	1	22718000	+		29812	23162	20529	20567	34311	34311					0.08165466542754984
KALKKKKK	8	Unmodified	_KALKKKKK_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;SART3|p.K608Q|1|0.2|ENSG00000075856|chr12:108530235-108530235|T/G|missense_variant;nc|ENSG00000105825|P48307-2|TFPI2;ENSG00000105825|ENST00000222543|TFPI2	nc|ENSG00000075856|Q15020-4|SART3;ENSG00000105825|ENST00000222543|TFPI2	nc|ENSG00000075856|Q15020-4|SART3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2919921875	2	486.358037	970.701521	-0.88137	-0.00042866	-0.65569	-0.0003189	-1.5371	-0.00074756	486.3570624527113	81.842	0.2798	81.868	81.66	81.94	0.025711					9	6	2	0	0	0	0.027866	1	10132	10132		20.482	11.66	1	56165			29813	1572;2724	20530	20568	34312	34312					0.21499786124229558
KALKMTIFW	9	Unmodified	_KALKMTIFW_					0	0	0		ENST00000506641.5_1_5:1318486-1326363:-|nuORF;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000503042.5_1_5:1325844-1330799:-|nuORF	ENST00000506641.5_1_5:1318486-1326363:-|nuORF	ENST00000506641.5_1_5:1318486-1326363:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3114013671875	2	569.328088	1136.64162	-0.27642	-0.00015738	3.8424	0.0021876	3.5659	0.0020302	569.3305411706713	31.255	0.19429	31.07	30.905	31.099	-0.18503					7	4	2	0	0	0	0.024487	1	2056	2056		24.203	5.0992	1	83347			29814	1131	20531	20569	34313	34313					0.07876727398706862
KALKQQVL	8	Unmodified	_KALKQQVL_					0	0	0		sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2676696777344	2	464.302927	926.591301	0.51249	0.00023795	-0.45418	-0.00021088	0.058314	2.7075E-05	464.30266712923753	65.894	0.61519	65.894	65.529	66.145	0					25	15	2	0	0	0	0.027866	1	7865	7865		33.516	6.7195	1	361050			29815	37924	20532	20570	34314	34314					0.125069410651804
KALKQQVL	8	Unmodified	_KALKQQVL_					0	0	0		sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.268798828125	2	464.302927	926.591301	-0.064971	-3.0166E-05	0.29163	0.0001354	0.22666	0.00010524	464.302963749496	66.244	0.53889	65.962	65.634	66.173	-0.28148					21	13	2	0	0	0	0.027866	1	7877	7877		25.45	0	1	354360			29816	37924	20532	20570	34315	34315					0.125069410651804
KALKYLNVR	9	Unmodified	_KALKYLNVR_					0	0	0		ENSG00000128965|ENST00000617768|CHAC1	ENSG00000128965|ENST00000617768|CHAC1	ENSG00000128965|ENST00000617768|CHAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8294677734375	2	552.848033	1103.68151	-0.70474	-0.00038961	1.353	0.00074799	0.64823	0.00035837	552.8490734061187	49.03	0.10728	48.877	48.792	48.9	-0.15276					6	2	3	0	0	0	0.024541	1	5011	5011		30.504	7.4612	1	130290			29817	4325	20533	20571	34316	34316					0.13381990393577325
KALLFPAIH	9	Unmodified	_KALLFPAIH_					0	0	0		ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3108215332031	2	505.313295	1008.61204	-0.33267	-0.0001681	-4.2251	-0.002135	-4.5577	-0.0023031	505.31106159973683	48.216	1.4876	48.283	47.97	49.458	0.066795					87	40	4	0	0	0	0.56952	1	4861	4861		54.765	6.8491	1	6889200			29818	13641	20534	20572	34317	34317					0.10807531444845608
KALLFPAIH	9	Unmodified	_KALLFPAIH_					0	0	0		ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.313295	1008.61204	-0.55327	-0.00027958	-3.8673	-0.0019542	-4.4205	-0.0022338	505.3111669881995	48.157	0.80416	48.059	47.817	48.621	-0.097553	-0.15603	6.854E-05	NaN	54.765	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1968100			29819	13641	20534	20572							0.10807531444845608
KALLFPAIH	9	Unmodified	_KALLFPAIH_					0	0	0		ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	505.313295	1008.61204	-1.1824	-0.0005975	-3.186	-0.0016099	-4.3684	-0.0022074	505.31150554807425	48.481	0.7557	48.205	47.966	48.722	-0.27598	-0.00991	0.00075707	NaN	54.765	48	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2332200			29820	13641	20534	20572							0.10807531444845608
KALLFPAIH	9	Unmodified	_KALLFPAIH_					0	0	0		ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	ENST00000399218.8_1_18:29848663-29848717:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.313295	1008.61204	-0.16363	-8.2682E-05	-4.1966	-0.0021206	-4.3602	-0.0022033	505.31096656600573	48.253	0.94812	48.066	47.749	48.698	-0.18684	-0.14917	-0.0002643	NaN	54.765	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2019300			29821	13641	20534	20572							0.10807531444845608
KALLGPRDTT	10	Unmodified	_KALLGPRDTT_					0	0	0		ELOVL5|p.R22T|1|0.53|ENSG00000012660|chr6:53291957-53291957|C/G|missense_variant	ELOVL5|p.R22T|1|0.53|ENSG00000012660|chr6:53291957-53291957|C/G|missense_variant	ELOVL5|p.R22T|1|0.53|ENSG00000012660|chr6:53291957-53291957|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.311767578125	2	536.31148	1070.60841	0.59137	0.00031716	-0.25105	-0.00013464	0.34032	0.00018252	536.3113371043105	97.078	1.1595	96.954	96.572	97.732	-0.12368					69	25	5	0	0	0	1.1265	1	12000	12000		24.519	0.31644	1	563610			29822	702	20535	20573	34318	34318					0.07592816880310238
KALLKWVQ	8	Unmodified	_KALLKWVQ_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2873840332031	2	493.313295	984.612037	-0.33339	-0.00016447	1.5114	0.0007456	1.178	0.00058114	493.31522347398317	22.269	0.2347	22.193	22.082	22.317	-0.075296					6	4	2	0	0	0	0.027866	1	751	751		18.324	9.5021	1	8706.8			29823	4485	20536	20574	34319	34319					0.11911531444843604
KALLLKGKAPV	11	Unmodified	_KALLLKGKAPV_					0	0	0		ENSG00000129484|ENST00000429687|PARP2;nc|ENSG00000129484|Q9UGN5|PARP2	ENSG00000129484|ENST00000429687|PARP2	ENSG00000129484|ENST00000429687|PARP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3109741210938	2	569.389534	1136.76451	-0.33818	-0.00019256	2.2246	0.0012666	1.8864	0.0010741	569.391472119725	31.44	0.10865	31.287	31.197	31.305	-0.15231					4	2	2	0	0	0	0.024749	1	2067	2067		25.574	16.391	1	59828			29824	4351	20537	20575	34320	34320					0.2016030712159136
KALPELIYY	9	Unmodified	_KALPELIYY_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.3154907226562	2	555.3157	1108.61685	0.68359	0.00037961	-1.8116	-0.001006	-1.128	-0.00062639	555.3150939870351	67.75	1.1557	67.494	66.993	68.148	-0.25516					52	27	4	0	0	0	0.32811	3	7803	7793;7803;7817		71.877	18.514	1	1638800			29825	10173	20538	20576	34321;34322;34323	34322					0.06688370796950949
KALPELIYY	9	Unmodified	_KALPELIYY_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.3151245117188	2	555.3157	1108.61685	0.0087891	4.8807E-06	-1.1357	-0.0006307	-1.127	-0.00062582	555.3154111418414	67.706	1.1512	67.472	66.929	68.081	-0.23376					53	27	4	0	0	0	0.29158	2	7811	7799;7811		76.774	11.309	1	1560700			29826	10173	20538	20576	34324;34325	34325					0.06688370796950949
KALPELIYY	9	Unmodified	_KALPELIYY_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.3150634765625	2	555.3157	1108.61685	-0.29844	-0.00016573	0.10398	5.7742E-05	-0.19445	-0.00010798	555.3156149182079	67.712	0.63106	67.474	66.998	67.629	-0.23814					37	14	4	0	0	0	0.53979	3	7792	7784;7792;7806		56.721	14.325	1	1606600			29827	10173	20538	20576	34326;34327;34328	34327					0.06688370796950949
KALPERQR	8	Unmodified	_KALPERQR_					0	0	0		nc|ENSG00000157927|Q96JH8-3|RADIL;ENST00000472999.5_1_7:4839011-4843599:-|nuORF;nc|ENSG00000157927|Q96JH8-2|RADIL;nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	nc|ENSG00000157927|Q96JH8-3|RADIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7716064453125	2	499.298707	996.582862	-0.40227	-0.00020085	-0.31438	-0.00015697	-0.71665	-0.00035782	499.29831288102844	31.236	0.488	30.995	30.585	31.073	-0.24109					14	11	2	0	0	0	0.027866	1	2062	2062		16.473	0	1	112570			29828	6632	20539	20577	34329	34329					0.08443387148565762
KALPPGWT	8	Unmodified	_KALPPGWT_					0	0	0		ENST00000594688.1_1_19:42929068-42929311:+|nuORF;ENST00000593740.2_1_19:42929059-42989297:+|nuORF	ENST00000594688.1_1_19:42929068-42929311:+|nuORF	ENST00000594688.1_1_19:42929068-42929311:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.54119873046875	2	435.247621	868.480688	1.1508	0.00050086	-4.1126	-0.00179	-2.9619	-0.0012891	435.2451086441206	20.156	0.77813	19.96	19.754	20.533	-0.19664					35	15	4	0	0	0	0.027866	1	551	551		25.45	8.0852	1	178000			29829	17397	20540	20578	34330	34330					0.04118721076940801
KALPPGWT	8	Unmodified	_KALPPGWT_					0	0	0		ENST00000594688.1_1_19:42929068-42929311:+|nuORF;ENST00000593740.2_1_19:42929059-42989297:+|nuORF	ENST00000594688.1_1_19:42929068-42929311:+|nuORF	ENST00000594688.1_1_19:42929068-42929311:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.247621	868.480688	0.043771	1.9051E-05	-2.5915	-0.0011279	-2.5477	-0.0011089	435.24558999946436	20.047	0.52738	19.88	19.62	20.147	-0.16774	-0.047807	0.0008915	NaN	25.45	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131480			29830	17397	20540	20578							0.04118721076940801
KALQEWLL	8	Unmodified	_KALQEWLL_					0	0	0		ENSG00000148300|ENST00000371942|REXO4	ENSG00000148300|ENST00000371942|REXO4	ENSG00000148300|ENST00000371942|REXO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7963562011719	2	500.794935	999.575317	-0.47683	-0.0002388	1.258	0.00063001	0.78118	0.00039121	500.7955052595396	66.94	1.2688	66.658	66.409	67.678	-0.28149					73	33	4	0	0	0	1.0574	1	7937	7937		9.4706	0	1	6549200			29831	6016	20541	20579	34331	34331					0.07551234828292763
KALQVMTDF	9	Unmodified	_KALQVMTDF_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.7752685546875	2	526.775885	1051.53722	0.2262	0.00011915	0.48119	0.00025348	0.70738	0.00037263	526.7756263930734	59.115	0.68774	58.934	58.628	59.316	-0.18133					30	16	3	0	0	0	0.03849	1	6530	6530		134.81	58.037	1	1139400			29832	2165	20542	20580	34332	34332					0.013509808512935706
KALQVMTDF	9	Unmodified	_KALQVMTDF_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.775390625	2	526.775885	1051.53722	0.53733	0.00028305	0.42605	0.00022443	0.96338	0.00050748	526.7754317791425	59.276	0.6456	59.035	58.738	59.384	-0.24165					32	15	4	0	0	0	0.14024	1	6537	6537		101.6	22.15	1	904620			29833	2165	20542	20580	34333	34333					0.013509808512935706
KALQVMTDF	9	Unmodified	_KALQVMTDF_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.775885	1051.53722	-0.15117	-7.9631E-05	1.3121	0.00069119	1.1609	0.00061156	526.7758611853496	59.221	0.64878	59.034	58.74	59.389	-0.18795	0.032918	0.00066115	NaN	134.81	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	887340			29834	2165	20542	20580							0.013509808512935706
KALREKLE	8	Unmodified	_KALREKLE_					0	0	0		CEP135|p.E586K|1|0.11|ENSG00000174799|chr4:55981356-55981356|G/A|missense_variant	CEP135|p.E586K|1|0.11|ENSG00000174799|chr4:55981356-55981356|G/A|missense_variant	CEP135|p.E586K|1|0.11|ENSG00000174799|chr4:55981356-55981356|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.80340576171875	2	493.803291	985.59203	-0.29694	-0.00014663	0.11928	5.8901E-05	-0.17766	-8.7729E-05	493.8032559448605	23.314	0.68254	23.134	22.836	23.519	-0.17989					41	15	4	0	0	0	0.96769	1	891	891		42.396	0	1	2163500			29835	253	20543	20581	34334	34334					0.09865735714242874
KALSMPEKW	9	Unmodified	_KALSMPEKW_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2935180664062	2	545.291702	1088.56885	-0.19177	-0.00010457	0.00314	1.7122E-06	-0.18863	-0.00010286	545.2917217426224	46.182	0.8401	46.086	45.632	46.473	-0.096653					60	22	4	0	0	0	0.030064	2	4435	4435;4446		141.52	38.747	1	2200100			29836	2154	20544	20582	34335;34336	34335					0.0281097360525564
KALSMPEKW	9	Unmodified	_KALSMPEKW_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2924194335938	2	545.291702	1088.56885	-0.31425	-0.00017136	0.71484	0.0003898	0.4006	0.00021844	545.2916316524411	46.55	0.99074	46.289	45.891	46.882	-0.26118					63	26	3	0	0	0	0.065	2	4476	4476;4487		123.21	35.512	1	2133300			29837	2154	20544	20582	34337;34338	34337					0.0281097360525564
KALSMPEKW	9	Unmodified	_KALSMPEKW_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2940063476562	2	545.291702	1088.56885	-1.1667	-0.00063618	0.80881	0.00044103	-0.35787	-0.00019514	545.2920050413636	46.383	0.69634	46.181	45.744	46.441	-0.20226					60	18	4	0	0	0	0.065	2	4445	4445;4456		123.21	35.512	1	2485500			29838	2154	20544	20582	34339;34340	34339					0.0281097360525564
KALTAYALGLI	11	Unmodified	_KALTAYALGLI_					0	0	0			REV__ENST00000491838.5_1_21:42598231-42618026:+|nuORF	REV__ENST00000491838.5_1_21:42598231-42618026:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3299560546875	2	567.350074	1132.6856	-0.53232	-0.00030201	-3.7707	-0.0021393	-4.303	-0.0024413	567.3474596180045	90.673	0.24892	90.684	90.534	90.783	0.011276					8	5	2	0	0	0	0.024747	1	11393	11393		18.262	10.458	1	45145	+		29839	27460	20545	20583	34341	34341					0.12456035096647611
KALTNTRW	8	Unmodified	_KALTNTRW_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.78460693359375	2	495.279983	988.545414	-0.4278	-0.00021188	4.206	0.0020831	3.7782	0.0018712	495.2819288578615	32.824	0.53145	32.593	32.344	32.876	-0.23107					23	12	2	0	0	0	0.027866	1	2284	2284		42.396	0	1	311070	+		29840	22693	20546	20584	34342	34342					0.05068295882949769
KALVERLR	8	Unmodified	_KALVERLR_					0	0	0		nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.8193664550781	2	492.819276	983.623999	2.6776	0.0013196	-2.7094	-0.0013353	-0.031788	-1.5666E-05	492.81777998944574	18.44	0.39069	18.44	18.235	18.626	0					12	7	2	0	0	0	0.89627	1	291	291		51.335	3.4199	1	133040			29841	18172	20547	20585	34343	34343					0.1315314818804154
KALVKLIKPK	10	Unmodified	_KALVKLIKPK_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000555995.1_1_14:91755401-91757391:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3113403320312	2	569.407727	1136.8009	-0.31842	-0.00018131	-1.1767	-0.00067004	-1.4952	-0.00085135	569.4072335413418	31.367	0.21724	31.215	31.124	31.342	-0.15231					6	5	2	0	0	0	0.03519	1	2055	2055		6.3127	0	1	57872			29842	928	20548	20586	34344	34344					0.23797184018326334
KALVNIQT	8	Unmodified	_KALVNIQT_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.26336669921875	2	443.77146	885.528367	-0.59238	-0.00026288	1.3712	0.00060851	0.77885	0.00034563	443.7717885747143	29.38	0.43169	29.208	28.893	29.325	-0.17258					12	9	2	0	0	0	0.027866	1	1795	1795		31.955	3.7006	1	48104			29843	18784	20549	20587	34345	34345					0.08102375277132978
KALWEVML	8	Unmodified	_KALWEVML_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2777404785156	2	495.278063	988.541574	0.59618	0.00029527	-1.5025	-0.00074414	-0.9063	-0.00044887	495.2773867944501	20.852	0.8856	20.656	20.336	21.221	-0.19577					29	17	2	0	0	0	0.93274	1	579	579		47.916	3.7988	1	1663300			29844	743	20550	20588	34346	34346					0.0468449006488072
KALYGTTSET	10	Unmodified	_KALYGTTSET_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7731323242188	2	535.771854	1069.52915	-0.29263	-0.00015679	2.3091	0.0012372	2.0165	0.0010804	535.7730676876516	41.453	0.90016	41.453	41.153	42.053	0					62	25	3	0	0	0	1.0992	1	3765	3765		32.812	0	1	18141000			29845	9890	20551	20589	34347	34347					-0.002828748644560619
KALYGTTSET	10	Unmodified	_KALYGTTSET_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7732543945312	2	535.771854	1069.52915	-0.62204	-0.00033327	2.5266	0.0013537	1.9045	0.0010204	535.7732451828175	41.63	2.2218	41.498	41.215	43.437	-0.1322					121	62	4	0	0	0	1.0393	1	3776	3776		40.778	1.5253	1	16717000			29846	9890	20551	20589	34348	34348					-0.002828748644560619
KAMELIREL	9	Unmodified	_KAMELIREL_					0	0	0		ENST00000484893.1_1_20:25388456-25391762:+|nuORF;ENSG00000101003|ENST00000262460|GINS1	ENST00000484893.1_1_20:25388456-25391762:+|nuORF	ENST00000484893.1_1_20:25388456-25391762:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.8180541992188	2	551.818084	1101.62162	-0.68951	-0.00038048	0.43908	0.00024229	-0.25042	-0.00013819	551.8182345727896	52.527	0.655	52.258	52.018	52.673	-0.26903					32	16	2	0	0	0	0.22379	1	5467	5467		85.862	20.396	1	2358700			29847	2274	20552	20590	34349	34349					0.07486931668063335
KAMGIMNSF	9	Unmodified	_KAMGIMNSF_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;HIST1H2BK|p.V67I|1|0.08|ENSG00000197903|chr6:27146600-27146600|C/T|missense_variant;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000203814|Q5QNW6-2|H2BC18;nc|ENSG00000220323|Q6DRA6|H2BC19P	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.7427062988281	2	499.743531	997.472508	-0.31965	-0.00015974	-1.1572	-0.00057831	-1.4769	-0.00073806	499.74311571160223	56.921	1.1626	56.754	56.402	57.565	-0.1672					71	30	4	0	0	0	0.027092	4	6174	6174;6185;6197;6210		143.89	69.632	1	7172500			29848	4066;18727	20553	20591	34350;34351;34352;34353	34350					-0.02632917226344489
KAMGIMNSF	9	Unmodified	_KAMGIMNSF_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;HIST1H2BK|p.V67I|1|0.08|ENSG00000197903|chr6:27146600-27146600|C/T|missense_variant;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000203814|Q5QNW6-2|H2BC18;nc|ENSG00000220323|Q6DRA6|H2BC19P	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.74249267578125	2	499.743531	997.472508	-0.10757	-5.3759E-05	-0.73201	-0.00036582	-0.83958	-0.00041958	499.7431092980612	56.967	0.60912	56.742	56.426	57.035	-0.22479					46	15	4	0	0	0	0.013293	3	6168	6168;6178;6190		176.09	93.846	1	6274200			29849	4066;18727	20553	20591	34354;34355;34356	34354					-0.02632917226344489
KAMGIMNSF	9	Oxidation (M)	_KAM(Oxidation (M))GIMNSF_		KAM(1)GIMNSF		KAM(44)GIM(-44)NSF	0	0	1		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENST00000369385.5_1_1:149814728-149815097:+|nuORF;ENST00000465850.1_1_3:113822098-113822344:-|nuORF;HIST1H2BK|p.V67I|1|0.08|ENSG00000197903|chr6:27146600-27146600|C/T|missense_variant;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000203814|Q5QNW6-2|H2BC18;nc|ENSG00000220323|Q6DRA6|H2BC19P	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7404479980469	2	507.740988	1013.46742	-0.96303	-0.00048897	0.97968	0.00049742	0.016643	8.4501E-06	507.7413292974866	51.592	2.3667	51.316	50.299	52.665	-0.27643					147	62	3	0	0	0	0.10174	1	5310	5310		110.12	24.76	2	2210900			29850	4066;18727	20553	20592	34357	34357		159			-0.0387722108895332
KAMGRKSV	8	Unmodified	_KAMGRKSV_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.85345458984375	2	438.75783	875.501106	-0.71913	-0.00031552	0.69621	0.00030547	-0.022915	-1.0054E-05	438.75804629633546	38.818	0.45717	38.597	38.334	38.791	-0.22149					18	11	2	0	0	0	0.027866	1	3234	3234		6.3127	0	1	228030			29851	2650	20554	20593	34358	34358					0.05837568465108234
KAMQLLEDNY	10	Unmodified	_KAMQLLEDNY_					0	0	0			REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	REV__ENST00000474725.5_1_1:184690416-184706818:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	612.775146484375	2	612.800088	1223.58562	-0.37125	-0.0002275	-2.9268	-0.0017935	-3.298	-0.002021	612.7981629199041	49.2	1.0792	49.018	48.303	49.382	-0.18206					70	28	4	0	0	0	0.03519	1	4909	4909		30.318	0	1	610840	+		29852	22277	20555	20594	34359	34359					-0.017225702994437597
KAMTGVEQW	9	Oxidation (M)	_KAM(Oxidation (M))TGVEQW_		KAM(1)TGVEQW		KAM(110)TGVEQW	0	0	1		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2556762695312	2	533.255317	1064.49608	-1.4275	-0.00076121	0.51915	0.00027684	-0.90833	-0.00048437	533.2554438383129	38.799	1.1951	38.634	38.184	39.379	-0.16458					67	31	3	0	0	0	0.094442	1	3254	3254		112.41	10.81	1	3431200			29853	7082	20556	20595	34360	34360		298			-0.033587801881594714
KAMTGVEQW	9	Unmodified	_KAMTGVEQW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2560424804688	2	525.257859	1048.50117	-0.13654	-7.172E-05	-0.2005	-0.00010531	-0.33704	-0.00017703	525.2577116463701	45.91	0.97682	45.814	45.461	46.438	-0.096649					79	26	4	0	0	0	0.015512	3	4384	4375;4384;4396		159.28	57.675	1	6622900			29854	7082	20556	20596	34361;34362;34363	34362					-0.021144763255506405
KAMTGVEQW	9	Unmodified	_KAMTGVEQW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2573852539062	2	525.257859	1048.50117	-0.31656	-0.00016627	-0.093091	-4.8897E-05	-0.40965	-0.00021517	525.2577635632798	46.11	0.97683	45.849	45.557	46.534	-0.26118					93	25	5	0	0	0	0.016953	3	4397	4397;4408;4420		152.06	44.065	1	5710200			29855	7082	20556	20596	34364;34365;34366	34364					-0.021144763255506405
KAMTGVEQW	9	Unmodified	_KAMTGVEQW_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.25537109375	2	525.257859	1048.50117	-0.72425	-0.00038042	0.20356	0.00010692	-0.5207	-0.0002735	525.2578598925661	46.037	1.0115	45.835	45.492	46.504	-0.20226					87	27	4	0	0	0	0.012922	4	4396	4385;4396;4408;4422		172.25	59.838	1	7010400			29856	7082	20556	20596	34367;34368;34369;34370	34368					-0.021144763255506405
KAMTYVREK	9	Unmodified	_KAMTYVREK_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.7318725585938	2	563.307884	1124.60121	0.90619	0.00051046	-0.43018	-0.00024233	0.476	0.00026813	563.307298623415	51.262	0.39085	51.151	50.973	51.364	-0.11163					17	9	2	0	0	0	0.024389	1	5287	5287		51.193	7.0759	1	128790			29857	3147	20557	20597	34371	34371					0.04389761008246751
KANKQDIIL	9	Unmodified	_KANKQDIIL_					0	0	0			REV__FKBP6|p.A255S|1|0.06|ENSG00000077800|chr7:73340812-73340812|G/T|missense_variant	REV__FKBP6|p.A255S|1|0.06|ENSG00000077800|chr7:73340812-73340812|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.817626953125	2	521.816399	1041.61824	-0.67651	-0.00035301	0.85683	0.00044711	0.18033	9.4097E-05	521.8170059460965	64.752	0.94876	64.792	64.442	65.391	0.039429					77	25	5	0	0	0	0.23085	1	7593	7593		84.916	12.036	1	9637600	+		29858	20596	20558	20598	34372	34372					0.09910004885705348
KANLPQLHH	9	Unmodified	_KANLPQLHH_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2785034179688	2	529.298707	1056.58286	0.012961	6.8604E-06	-1.3509	-0.00071501	-1.3379	-0.00070815	529.2979003763273	68.647	1.2417	68.666	68.391	69.633	0.018913					41	32	2	0	0	0	0.024405	1	8285	8285		44.117	0	1	375100	+		29859	24754	20559	20599	34373	34373					0.05683387148565089
KANSASSHNW	10	Unmodified	_KANSASSHNW_					0	0	0		ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.2577514648438	2	551.257237	1100.49992	0.075758	4.1762E-05	-1.0515	-0.00057963	-0.97572	-0.00053787	551.2565273924483	20.897	0.53154	20.726	20.49	21.022	-0.17121					27	10	4	0	0	0	0.24941	1	608	608		114.89	39.851	1	371320			29860	3948	20560	20600	34374	34374					-0.046309743700930994
KANVKASH	8	Unmodified	_KANVKASH_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2253112792969	2	427.745776	853.477	-0.85737	-0.00036673	0.45791	0.00019587	-0.39946	-0.00017087	427.74630791082166	25.687	0.34029	25.687	25.527	25.867	0					12	7	2	0	0	0	0.027866	1	1254	1254		23.042	4.7181	1	51980	+		29861	24756;36782	20561	20601	34375	34375					0.04440051303083692
KANVNLKDL	9	Unmodified	_KANVNLKDL_					0	0	0		nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;ENST00000476126.1_1_2:231134613-231152782:+|nuORF	nc|ENSG00000079263|Q13342-3|SP140	nc|ENSG00000079263|Q13342-3|SP140	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2528076171875	2	507.800749	1013.58694	0.52839	0.00026832	-1.3101	-0.00066527	-0.78172	-0.00039696	507.80001888127805	36.894	0.49958	36.894	36.543	37.042	0					18	12	2	0	0	0	0.024484	1	2953	2953		30.318	0	1	168770			29862	1656	20562	20602	34376	34376					0.08069431851606623
KANVVQTCHA	10	Unmodified	_KANVVQTCHA_					0	0	0			REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7730102539062	2	535.774208	1069.53386	-0.62203	-0.00033327	-1.8673	-0.0010004	-2.4893	-0.0013337	535.7732451828175	41.63	2.2218	41.498	41.215	43.437	-0.1322					121	62	4	0	0	0	0.85955	1	3739	3739		56.721	1.9447	1	16717000	+		29863	36442	20563	20603	34377	34377					0.0018773079727907316
KAPARSKP	8	Unmodified	_KAPARSKP_					0	0	0			REV__ENSG00000186190|ENST00000375494|BPIFB3	REV__ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7404479980469	2	427.763969	853.513385	-0.27233	-0.00011649	1.2297	0.00052601	0.95735	0.00040952	427.7646749125297	22.578	0.73523	22.392	22.142	22.877	-0.18539					20	15	2	0	0	0	0.027866	1	796	796		23.042	0	1	100620	+		29864	27833	20564	20604	34378	34378					0.0807692819979593
KAPCRSPAAL	10	Unmodified	_KAPCRSPAAL_					0	0	0			REV__ENST00000504186.5_1_11:67067055-67067602:+|nuORF	REV__ENST00000504186.5_1_11:67067055-67067602:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.30780029296875	2	507.281669	1012.54878	-0.16593	-8.4173E-05	3.9732	0.0020155	3.8073	0.0019314	507.2833254320857	43.359	0.21661	43.247	43.071	43.288	-0.11253					8	5	2	0	0	0	0.03519	1	3976	3976		45.972	0	1	305990	+		29865	32643	20565	20605	34379	34379					0.043012226652763275
KAPKIIENN	9	Unmodified	_KAPKIIENN_					0	0	0			REV__nc|ENSG00000066697|Q96H12-2|MSANTD3	REV__nc|ENSG00000066697|Q96H12-2|MSANTD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.286865234375	2	513.800749	1025.58694	0.22782	0.00011705	4.1542	0.0021344	4.382	0.0022515	513.802730148359	71.584	0.63908	71.584	71.301	71.94	0					28	16	2	0	0	0	0.024436	1	8732	8732		23.042	0	1	787870	+		29866	20342	20566	20606	34380	34380					0.07517431851624679
KAPKKKLP	8	Unmodified	_KAPKKKLP_					0	0	0		ENST00000483741.1_1_1:44684093-44685454:+|nuORF;ENSG00000178028|ENST00000372289|DMAP1	ENST00000483741.1_1_1:44684093-44685454:+|nuORF	ENST00000483741.1_1_1:44684093-44685454:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.24566650390625	2	455.315838	908.617122	-0.084968	-3.8687E-05	-0.097935	-4.4591E-05	-0.1829	-8.3278E-05	455.3155330591937	42.055	0.38038	41.824	41.651	42.031	-0.23029					17	10	3	0	0	0	0.027866	1	3751	3751		17.365	0	1	54849			29867	8785	20567	20607	34381	34381					0.15915835307464477
KAPLRARSEG	10	Unmodified	_KAPLRARSEG_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3;ALPK3|p.Q675Sfs*30|1|0.26|ENSG00000136383|chr15:84840691-84840691|C/-|frameshift_variant	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8101196289062	2	542.814722	1083.61489	-1.4562	-0.00079043	-3.2362	-0.0017566	-4.6923	-0.0025471	542.8128596402748	44.822	0.76012	44.611	44.15	44.91	-0.21109					28	19	2	0	0	0	0.03519	1	4129	4129		16.717	3.2633	1	91693			29868	5014	20568	20608	34382	34382					0.07642754831681486
KAPLRARSEG	10	Unmodified	_KAPLRARSEG_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3;ALPK3|p.Q675Sfs*30|1|0.26|ENSG00000136383|chr15:84840691-84840691|C/-|frameshift_variant	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.814722	1083.61489	-0.77496	-0.00042066	-3.5386	-0.0019208	-4.3136	-0.0023415	543.314290967909	44.944	0.51386	44.692	44.391	44.905	-0.25252	0.040621	-0.00015079	NaN	16.717	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99945			29869	5014	20568	20608							0.07642754831681486
KAPRLYPGG	9	Unmodified	_KAPRLYPGG_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.30615234375	2	479.777077	957.5396	0.5512	0.00026445	-4.0004	-0.0019193	-3.4492	-0.0016548	479.7751779027069	20.88	0.29177	20.712	20.444	20.736	-0.16774					6	5	2	0	0	0	0.024412	1	571	571		24.203	1.1603	1	13138			29870	1125	20569	20609	34383	34383					0.059131973712851504
KAPRLYPGG	9	Unmodified	_KAPRLYPGG_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.777077	957.5396	-0.75715	-0.00036326	-3.2048	-0.0015376	-3.9619	-0.0019008	479.77565873555756	21.071	0.29745	20.858	20.673	20.971	-0.2128	0.073013	0.00031144	NaN	24.203	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36227			29871	1125	20569	20609							0.059131973712851504
KAPRRRSL	8	Unmodified	_KAPRRRSL_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.28741455078125	2	492.314692	982.614831	-0.067708	-3.3333E-05	-2.1631	-0.0010649	-2.2308	-0.0010983	492.3138644168009	22.398	0.3686	22.209	21.959	22.327	-0.18894					20	7	4	0	0	0	0.027866	1	808	808		12.207	0.69583	1	128310			29872	6997	20570	20610	34384	34384					0.12282799622369112
KAPRVPVP	8	Unmodified	_KAPRVPVP_					0	0	0		ENSG00000140955|ENST00000315906|ADAD2;nc|ENSG00000140955|Q8NCV1-2|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.25372314453125	2	432.276712	862.538872	-0.97723	-0.00042243	0.88349	0.00038191	-0.093737	-4.052E-05	432.27723940899665	28.913	0.45322	28.913	28.696	29.149	0					20	10	3	0	0	0	0.027866	1	1706	1706		33.516	0	1	42874			29873	5455	20571	20611	34385	34385					0.10210402722225354
KAPSPCRSPQ	10	Unmodified	_KAPSPCRSPQ_					0	0	0		ENST00000396868.7_1_16:3283812-3285267:-|nuORF;ENST00000577015.1_1_16:3284985-3285267:-|nuORF	ENST00000396868.7_1_16:3283812-3285267:-|nuORF	ENST00000396868.7_1_16:3283812-3285267:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7750854492188	2	535.774208	1069.53386	-0.62203	-0.00033327	-1.8673	-0.0010004	-2.4893	-0.0013337	535.7732451828175	41.63	2.2218	41.498	41.215	43.437	-0.1322					121	62	4	0	0	0	1.0344	1	3719	3719		41.427	0.64845	1	16717000			29874	13567	20572	20612	34386	34386					0.0018773079727907316
KAPWELLEL	9	Unmodified	_KAPWELLEL_					0	0	0		ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2404174804688	2	549.813325	1097.6121	0.048412	2.6617E-05	-1.1082	-0.00060928	-1.0597	-0.00058266	549.812993250396	49.495	0.37825	49.314	49.154	49.532	-0.18071					14	9	2	0	0	0	0.024523	1	4986	4986		21.96	4.5949	1	261070			29875	4817	20573	20613	34387	34387					0.06719486654174034
KAQAQRSVSY	10	Unmodified	_KAQAQRSVSY_					0	0	0			REV__nc|ENSG00000211750|A0A075B6N3|TRBV24-1	REV__nc|ENSG00000211750|A0A075B6N3|TRBV24-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2964477539062	2	569.304187	1136.59382	-0.79683	-0.00045364	-3.341	-0.0019021	-4.1379	-0.0023557	569.3019542940606	60.937	0.84765	60.761	60.483	61.33	-0.1761					35	20	2	0	0	0	0.03519	1	6859	6859		41.427	26.562	1	181930	+		29876	37104	20574	20614	34388	34388					0.03098744732187697
KAQCRVSLS	9	Unmodified	_KAQCRVSLS_					0	0	0		ENST00000583264.1_1_17:21101639-21117457:-|nuORF	ENST00000583264.1_1_17:21101639-21117457:-|nuORF	ENST00000583264.1_1_17:21101639-21117457:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.79571533203125	2	496.271301	990.528049	-0.64462	-0.00031991	0.44297	0.00021983	-0.20166	-0.00010008	496.27126200862347	38.822	1.0012	38.601	38.186	39.188	-0.22165					56	26	3	0	0	0	0.024436	1	3259	3259		23.042	0	1	4008000			29877	17191	20575	20615	34389	34389					0.03240632285644551
KAQHKSLL	8	Unmodified	_KAQHKSLL_					0	0	0		nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.75048828125	2	462.784902	923.55525	-0.70466	-0.0003261	0.63719	0.00029488	-0.067465	-3.1222E-05	462.7850849186354	49.48	0.56151	49.555	49.279	49.84	0.074196					31	14	3	0	0	0	0.027866	1	5077	5077		17.365	0	1	962500			29878	18378	20576	20616	34390	34390					0.09041483888336188
KAQITAIIS	9	Unmodified	_KAQITAIIS_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7784118652344	2	472.792392	943.570232	0.17323	8.1903E-05	1.0103	0.00047766	1.1835	0.00055956	472.79262440669334	24.057	0.25796	24.057	23.908	24.166	0					8	5	2	0	0	0	0.024418	1	1025	1025		37.812	0	1	29349			29879	2972	20577	20617	34391	34391					0.0961893096566655
KAQKKKEQV	9	Unmodified	_KAQKKKEQV_					0	0	0			REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2889404296875	2	543.835123	1085.65569	-0.4992	-0.00027148	-0.24923	-0.00013554	-0.74843	-0.00040702	543.8349841130016	48.209	0.33216	48.022	47.825	48.157	-0.18684					12	8	2	0	0	0	0.024405	1	4768	4768		44.117	14.967	1	120660	+		29880	33751	20578	20618	34392	34392					0.11629096151318663
KAQKKKEQV	9	Unmodified	_KAQKKKEQV_					0	0	0			REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.835123	1085.65569	-1.0351	-0.0005629	-0.16153	-8.7847E-05	-1.1966	-0.00065075	543.8349322664685	48.223	0.40755	48.223	47.971	48.378	0	0.070654	-0.0001173	NaN	35.618	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325000	+		29881	33751	20578	20618							0.11629096151318663
KAQKKKEQV	9	Unmodified	_KAQKKKEQV_					0	0	0			REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.835123	1085.65569	-1.2187	-0.00066275	-0.15894	-8.6439E-05	-1.3776	-0.00074919	543.834907959826	48.372	0.40818	48.219	47.989	48.398	-0.15301	0.066446	-0.00011449	NaN	35.618	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316390	+		29882	33751	20578	20618							0.11629096151318663
KAQKKKEQV	9	Unmodified	_KAQKKKEQV_					0	0	0			REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	REV__ENST00000492967.5_1_1:192127843-192128375:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.835123	1085.65569	-1.1926	-0.0006486	0.5847	0.00031798	-0.60794	-0.00033062	543.8353753652192	48.063	0.39889	48.13	47.903	48.301	0.066799	-0.022874	0.00069435	NaN	35.618	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317960	+		29883	33751	20578	20618							0.11629096151318663
KAQLKKLTY	9	Unmodified	_KAQLKKLTY_					0	0	0			REV__nc|ENSG00000293034|A6NFF2|NAP1L6P	REV__nc|ENSG00000293034|A6NFF2|NAP1L6P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.83984375	2	546.842416	1091.67028	-0.3389	-0.00018533	-3.9718	-0.002172	-4.3107	-0.0023573	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	0.72875	1	12408	12408		44.117	6.9577	1	9530200	+		29884	37241	20579	20619	34393	34393					0.12811168299458586
KAQNDVKDD	9	Unmodified	_KAQNDVKDD_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.78369140625	2	516.751453	1031.48835	-1.6054	-0.00082958	1.1806	0.00061008	-0.42476	-0.0002195	516.7521548951931	29.592	0.47727	29.592	29.296	29.773	0					15	11	2	0	0	0	0.024405	1	1796	1796		44.117	12.162	1	120570	+		29885	24914	20580	20620	34394	34394					-0.02613216184090561
KAQNDVKDD	9	Unmodified	_KAQNDVKDD_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.751453	1031.48835	-0.87549	-0.00045241	1.7948	0.00092745	0.91929	0.00047504	516.7523590749587	29.17	0.39609	29.249	29.054	29.45	0.078344	-0.20296	0.0007131	NaN	35.618	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76106	+		29886	24914	20580	20620							-0.02613216184090561
KAQTKAPPK	9	Unmodified	_KAQTKAPPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7886962890625	2	484.798009	967.581465	-0.45088	-0.00021858	0.28739	0.00013933	-0.16349	-7.9259E-05	484.7980717552528	46.559	0.89787	46.611	46.308	47.206	0.051395					40	24	3	0	0	0	0.024017	1	4619	4619		56.434	0	1	987520			29887	7521	20581	20621	34395	34395					0.09637753059791976
KAQTLLKNP	9	Unmodified	_KAQTLLKNP_					0	0	0		ENSG00000150712|ENST00000382142|MTMR12	ENSG00000150712|ENST00000382142|MTMR12	ENSG00000150712|ENST00000382142|MTMR12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.764404296875	2	506.811116	1011.60768	-0.72999	-0.00036997	2.1746	0.0011021	1.4446	0.00073216	507.3135485922543	39.047	0.35631	38.948	38.807	39.163	-0.098755					12	9	2	0	0	0	0.024319	1	3329	3329		31.53	0	1	198320			29888	6150	20582	20622	34396	34396					0.10234022231270501
KARAGPPL	8	Unmodified	_KARAGPPL_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.51123046875	2	405.253237	808.491922	0.49299	0.00019979	0.69041	0.00027979	1.1834	0.00047958	405.2533349670262	31.869	0.25058	31.632	31.489	31.74	-0.23667					8	5	2	0	0	0	0.027866	1	2167	2167		8.8223	0	1	52328	+		29889	24519	20583	20623	34397	34397					0.08001543171087633
KARAKKNKA	9	Unmodified	_KARAKKNKA_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1;ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.3004150390625	2	507.830175	1013.6458	-0.19103	-9.7011E-05	1.944	0.00098723	1.753	0.00089022	507.8311922464317	47.401	0.38024	47.207	47.036	47.416	-0.19387					20	9	3	0	0	0	0.024506	1	4626	4626		16.473	0	1	232720			29890	6366	20584	20624	34398	34398					0.1395195293659981
KARALEAAAL	10	Unmodified	_KARALEAAAL_					0	0	0		ENSG00000162889|ENST00000367103|MAPKAPK2;ENST00000294981.8_1_1:206905793-206906060:+|nuORF	ENSG00000162889|ENST00000367103|MAPKAPK2;ENST00000294981.8_1_1:206905793-206906060:+|nuORF	ENSG00000162889|ENST00000367103|MAPKAPK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.30853271484375	2	507.308741	1012.60293	-0.26039	-0.0001321	-1.191	-0.00060419	-1.4514	-0.00073629	507.3082857973226	43.417	1.8823	43.305	42.854	44.736	-0.11253					163	50	6	0	0	0	0.91678	1	4049	4049		52.937	1.6012	1	110540000			29891	7007;11822	20585	20625	34399	34399					0.09713138088500273
KARAQAEAL	9	Unmodified	_KARAQAEAL_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2773742675781	2	479.277441	956.540328	-0.27271	-0.0001307	0.2678	0.00012835	-0.0049061	-2.3514E-06	479.27743444513277	21.318	0.9677	21.318	20.949	21.916	0					35	19	3	0	0	0	0.23085	2	650	638;650		84.916	6.3214	1	503940			29892	9268	20586	20626	34400;34401	34401					0.06031992020314192
KARAQAEAL	9	Unmodified	_KARAQAEAL_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.277587890625	2	479.277441	956.540328	0.012663	6.0691E-06	0.058862	2.8211E-05	0.071525	3.428E-05	479.2773660750044	21.256	0.58008	21.327	21.057	21.637	0.071487					26	11	3	0	0	0	0.17822	2	589	589;599		93.195	28.988	1	450650			29893	9268	20586	20626	34402;34403	34402					0.06031992020314192
KARAQAEAL	9	Unmodified	_KARAQAEAL_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	479.277441	956.540328	-0.16754	-8.0297E-05	0.17169	8.2287E-05	0.0041534	1.9906E-06	479.27744210358486	21.383	0.67306	21.293	21.01	21.683	-0.090092	-0.019756	8.7538E-06	NaN	93.195	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560020			29894	9268	20586	20626							0.06031992020314192
KAREIPAF	8	Unmodified	_KAREIPAF_					0	0	0		ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.78173828125	2	466.271627	930.528701	-0.31087	-0.00014495	-1.2114	-0.00056484	-1.5223	-0.00070979	466.27257020963583	29.57	0.49631	29.421	29.171	29.668	-0.14952					17	11	2	0	0	0	0.027866	1	1822	1822		18.324	0	1	140220			29895	10375	20587	20627	34404	34404					0.060657949969822766
KARGRNQT	8	Unmodified	_KARGRNQT_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7775573730469	2	465.765032	929.515511	0.13741	6.4001E-05	2.3353	0.0010877	2.4727	0.0011517	465.76581377208174	49.728	0.66251	49.577	49.368	50.031	-0.1512					26	17	2	0	0	0	0.027866	1	5097	5097		19.997	4.355	1	562140			29896	9098	20588	20628	34405	34405					0.047933569375913976
KARKQCLW	8	Unmodified	_KARKQCLW_					0	0	0		HGF|p.F99L|1|0.4|ENSG00000019991|chr7:81758762-81758762|G/T|missense_variant;nc|ENSG00000019991|P14210-6|HGF;nc|ENSG00000019991|P14210-5|HGF;nc|ENSG00000019991|P14210-2|HGF;nc|ENSG00000019991|P14210-4|HGF;nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF	HGF|p.F99L|1|0.4|ENSG00000019991|chr7:81758762-81758762|G/T|missense_variant	HGF|p.F99L|1|0.4|ENSG00000019991|chr7:81758762-81758762|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.26708984375	2	516.792204	1031.56985	-0.92025	-0.00047558	-2.2088	-0.0011415	-3.129	-0.0016171	516.7904525267658	31.449	0.41752	31.449	31.173	31.591	0					11	9	2	0	0	0	0.027866	1	2093	2093		19.36	1.995	1	82399			29897	951	20589	20629	34406	34406					0.055332327648102364
KARLPLGSSRK	11	Unmodified	_KARLPLGSSRK_					0	0	0		ENST00000299697.11_1_16:66544665-66544833:-|nuORF	ENST00000299697.11_1_16:66544665-66544833:-|nuORF	ENST00000299697.11_1_16:66544665-66544833:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9229431152344	3	404.922689	1211.74624	-0.22601	-9.1516E-05	-0.11784	-4.7715E-05	-0.34385	-0.00013923	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	1.0621	1	1397	1397		21.78	0.094677	1	42722000			29898	11888	20590	20630	34407	34407					0.14883565199602344
KARLRRPS	8	Unmodified	_KARLRRPS_					0	0	0			REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	REV__ENST00000607710.1_1_8:123792649-123793066:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2633056640625	2	492.314692	982.614831	0.89516	0.0004407	1.5906	0.0007831	2.4858	0.0012238	492.31523086899625	70.946	0.51404	70.946	70.787	71.301	0					22	12	3	0	0	0	0.027866	1	8589	8589		44.117	8.9161	1	277890	+		29899	35956	20591	20631	34408	34408					0.12282799622357743
KARNSFRY	8	Unmodified	_KARNSFRY_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2825927734375	2	521.283057	1040.55156	0.12901	6.7253E-05	-0.74497	-0.00038834	-0.61596	-0.00032109	521.2826237139075	22.154	1.1721	21.965	21.434	22.606	-0.18894					61	24	5	0	0	0	0.87148	1	760	760		53.351	5.4358	1	990180			29900	2880	20592	20632	34409	34409					0.03290814114461682
KARNSFRY	8	Unmodified	_KARNSFRY_					0	0	0		nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	nc|ENSG00000108107|P46779-4|RPL28	nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2825317382812	2	521.283057	1040.55156	0.032013	1.6688E-05	-0.68414	-0.00035663	-0.65213	-0.00033994	521.2826567919037	22.242	0.90419	22.04	21.517	22.421	-0.20199					54	18	5	0	0	0	0.845	1	741	741		55.504	12.64	1	845950			29901	2880	20592	20632	34410	34410					0.03290814114461682
KARRLVTE	8	Unmodified	_KARRLVTE_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7828369140625	2	486.801083	971.587613	0.071053	3.4589E-05	2.9239	0.0014234	2.995	0.001458	486.80213940177424	88.61	0.98146	88.626	88.193	89.174	0.015915					55	22	4	0	0	0	0.027866	1	11144	11144		34.173	0	1	515090	+		29902	23479	20593	20633	34411	34411					0.10068271291322617
KARVAIGAGH	10	Unmodified	_KARVAIGAGH_					0	0	0			REV__ENST00000513884.1_1_5:97912076-97912961:+|nuORF	REV__ENST00000513884.1_1_5:97912076-97912961:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.27642822265625	2	490.293425	978.572297	-0.49847	-0.00024439	2.3535	0.0011539	1.855	0.0009095	490.29444340253855	64.511	0.56408	64.557	64.372	64.937	0.045502					24	14	2	0	0	0	0.03519	1	7549	7549		53.351	0	1	526840	+		29903	34159	20594	20634	34412	34412					0.08215404494137601
KARVETQNHW	10	Unmodified	_KARVETQNHW_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.55487060546875	3	423.554666	1267.64217	0.019452	8.2392E-06	-0.076552	-3.2424E-05	-0.057099	-2.4185E-05	423.5546674618473	24.025	0.98669	23.845	23.519	24.506	-0.17989					54	22	4	0	0	0	0.85308	2	1011	999;1011		57.149	4.1359	1	4766800			29904	5609	20595	20635	34413;34414	34414					0.01905238372069107
KARVETQNHW	10	Unmodified	_KARVETQNHW_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.55487060546875	3	423.554666	1267.64217	2.2478	0.00095206	-2.4102	-0.0010209	-0.16242	-6.8794E-05	423.55369227421005	24.007	1.1839	23.826	23.539	24.723	-0.18089					57	26	4	0	0	0	0.9068	1	993	993		53.597	1.4297	1	4794700			29905	5609	20595	20635	34415	34415					0.01905238372069107
KARVLDQAR	9	Unmodified	_KARVLDQAR_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;chr5:167755192-167875986|342|11.18|0.1|6.82|+|ENST00000519204|TENM2,TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3200073242188	2	528.817264	1055.61998	-0.31737	-0.00016783	4.2128	0.0022278	3.8954	0.0020599	528.8191090467154	69.98	1.3609	69.98	69.383	70.744	0					94	36	4	0	0	0	0.70156	1	8494	8494		45.972	0.020292	1	15950000			29906	403	20596	20636	34416	34416					0.09439058694306368
KARVTNTKT	9	Unmodified	_KARVTNTKT_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A;ENSG00000238083|ENST00000576629|LRRC37A2;ENST00000572638.1_1_17:44625595-44632942:+|nuORF	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.80364990234375	2	509.803823	1017.59309	0.26088	0.000133	-0.50046	-0.00025514	-0.23958	-0.00012214	509.8034341260335	98.051	1.1848	98.061	97.728	98.913	0.010231					53	27	3	0	0	0	0.87816	1	12510	12510		33.922	1.1092	1	929870			29907	8660	20597	20637	34417	34417					0.08499950083148633
KARYFYNK	8	Unmodified	_KARYFYNK_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2568969726562	2	545.295633	1088.57671	-0.58416	-0.00031854	-0.29062	-0.00015848	-0.87479	-0.00047702	545.2952038989583	25.538	0.41639	25.367	25.076	25.492	-0.17151					12	9	2	0	0	0	0.027866	1	1165	1165		19.36	0	1	82276			29908	198	20598	20638	34418	34418					0.035968689170204016
KASGTLREY	9	Unmodified	_KASGTLREY_					0	0	0		ENST00000602216.1_1_19:17970765-17972392:+|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENST00000602216.1_1_19:17970765-17972392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7738647460938	2	512.774731	1023.53491	-0.15761	-8.0817E-05	-0.52212	-0.00026773	-0.67973	-0.00034855	512.7745083305114	24.413	1.3332	24.198	23.909	25.243	-0.2151					85	30	6	0	0	0	0.071379	5	1097	1050;1060;1072;1084;1097		120.87	31.608	1	14044000			29909	2701	20599	20639	34419;34420;34421;34422;34423	34423					0.02408268437852712
KASGTLREY	9	Unmodified	_KASGTLREY_					0	0	0		ENST00000602216.1_1_19:17970765-17972392:+|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENST00000602216.1_1_19:17970765-17972392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7744750976562	2	512.774731	1023.53491	-0.21664	-0.00011109	-0.20269	-0.00010393	-0.41932	-0.00021502	512.7746660045324	24.268	1.2076	24.093	23.786	24.993	-0.17484					85	27	6	0	0	0	0.094442	5	1030	1019;1030;1042;1055;1068		112.41	23.938	1	11732000			29910	2701	20599	20639	34424;34425;34426;34427;34428	34425					0.02408268437852712
KASGTLREY	9	Unmodified	_KASGTLREY_					0	0	0		ENST00000602216.1_1_19:17970765-17972392:+|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENST00000602216.1_1_19:17970765-17972392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7744140625	2	512.774731	1023.53491	1.9753	0.0010129	-2.7968	-0.0014341	-0.82144	-0.00042121	512.7733406904762	24.273	1.2206	24.092	23.804	25.025	-0.18089					84	27	6	0	0	0	0.086035	5	1023	999;1011;1023;1035;1048		115.49	30.17	1	12352000			29911	2701	20599	20639	34429;34430;34431;34432;34433	34431					0.02408268437852712
KASGVQAQM	9	Oxidation (M)	_KASGVQAQM(Oxidation (M))_		KASGVQAQM(1)		KASGVQAQM(77)	0	0	1		ENST00000492283.1_1_2:161159304-161174707:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ENST00000552916.5_1_12:56956336-56975213:+|nuORF;ENSG00000076067|ENST00000262031|RBMS2	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.23443603515625	2	468.234384	934.454216	3.4954	0.0016367	-3.1665	-0.0014827	0.32892	0.00015401	468.2327439365868	17.994	0.64665	17.751	17.528	18.175	-0.24256					19	12	2	0	0	0	0.28753	1	228	228		77.318	10.888	1	56885			29912	6336	20600	20640	34434	34434		265			-0.01563335876687688
KASGVQAQM	9	Oxidation (M)	_KASGVQAQM(Oxidation (M))_					0	0	1		ENST00000492283.1_1_2:161159304-161174707:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ENST00000552916.5_1_12:56956336-56975213:+|nuORF;ENSG00000076067|ENST00000262031|RBMS2	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.234384	934.454216	1.1441	0.00053569	-0.78988	-0.00036985	0.35419	0.00016584	468.23401401360104	18.036	0.34641	17.879	17.655	18.002	-0.15637	0.063909	0.001841	NaN	77.318	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24339			29913	6336	20600	20640				265			-0.01563335876687688
KASINRQAKP	10	Unmodified	_KASINRQAKP_					0	0	0			REV__nc|ENSG00000089505|Q8IZ96-10|CMTM1	REV__nc|ENSG00000089505|Q8IZ96-10|CMTM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.8086547851562	2	556.830372	1111.64619	0.18336	0.0001021	3.64	0.0020268	3.8233	0.0021289	556.8320896234044	51.732	0.88434	51.732	51.466	52.351	0					36	24	2	0	0	0	0.03519	1	5571	5571		51.193	3.5354	1	701690	+		29914	19504	20601	20641	34435	34435					0.0948332786579158
KASNKLQW	8	Unmodified	_KASNKLQW_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7749328613281	2	487.774534	973.534515	-1.1989	-0.00058481	1.6427	0.00080127	0.44377	0.00021646	487.7749301572532	55.763	0.95157	55.861	55.294	56.246	0.098015					53	25	4	0	0	0	0.6536	1	6114	6114		71.296	2.5089	1	5196600	+		29915	23724	20602	20642	34436	34436					0.04668893508653582
KASSKKCIPD	10	Unmodified	_KASSKKCIPD_					0	0	0		ENSG00000111339|ENST00000228936|ART4	ENSG00000111339|ENST00000228936|ART4	ENSG00000111339|ENST00000228936|ART4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8130493164062	2	538.792066	1075.56958	0.23449	0.00012634	2.7992	0.0015082	3.0337	0.0016345	538.7935149994862	71.013	1.0612	71.013	70.316	71.377	0					38	25	2	0	0	0	0.03519	1	8638	8638		24.519	0	1	586980			29916	3107	20603	20643	34437	34437					0.03481768254300732
KASSPRHSP	9	Unmodified	_KASSPRHSP_					0	0	0		nc|ENSG00000196132|Q01538-2|MYT1	nc|ENSG00000196132|Q01538-2|MYT1	nc|ENSG00000196132|Q01538-2|MYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.23736572265625	2	483.759415	965.504277	-0.4164	-0.00020144	-3.7563	-0.0018172	-4.1727	-0.0020186	483.75769794597176	40.454	0.3941	40.304	40.189	40.583	-0.1497					14	10	2	0	0	0	0.024495	1	3532	3532		14.137	0	1	1143300			29917	18618	20604	20644	34438	34438					0.020145348434766674
KASTKVYM	8	Unmodified	_KASTKVYM_					0	0	0			REV__ENSG00000185821|ENST00000328314|OR6C76	REV__ENSG00000185821|ENST00000328314|OR6C76	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.25347900390625	2	464.252046	926.489538	-0.042548	-1.9753E-05	4.0402	0.0018757	3.9977	0.0018559	464.25367601709354	78.304	2.1582	78.148	77.49	79.648	-0.15591					136	50	5	0	0	0	0.93274	1	9332	9332		47.916	7.1374	1	2114300	+		29918	27800	20605	20645	34439	34439					0.02335326651109426
KATAHKPAPRK	11	Unmodified	_KATAHKPAPRK_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.3673706054688	2	602.867289	1203.72002	0.025557	1.5408E-05	-1.8671	-0.0011256	-1.8416	-0.0011102	602.8665023324958	101.97	0.57633	101.79	101.47	102.05	-0.17178					20	13	2	0	0	0	0.024795	1	12658	12658		21.686	8.2317	1	33109			29919	6502	20606	20646	34440	34440					0.12631296028121142
KATAHKPAPRK	11	Unmodified	_KATAHKPAPRK_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	602.867289	1203.72002	-1.4222	-0.0008574	-0.68485	-0.00041287	-2.107	-0.0012703	602.8673436367573	101.71	0.79707	101.71	101.37	102.17	0	-0.0415	0.00036782	NaN	21.686	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48289			29920	6502	20606	20646							0.12631296028121142
KATAHKPAPRK	11	Unmodified	_KATAHKPAPRK_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	602.867289	1203.72002	-0.56808	-0.00034248	-0.97861	-0.00058997	-1.5467	-0.00093245	602.8668644368437	101.71	0.64091	101.72	101.43	102.07	0.0073471	-0.037481	1.362E-05	NaN	21.686	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62654			29921	6502	20606	20646							0.12631296028121142
KATAHKPAPRK	11	Unmodified	_KATAHKPAPRK_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	602.867289	1203.72002	-1.0371	-0.00062526	-0.30225	-0.00018222	-1.3394	-0.00080748	602.8670240189632	101.88	0.61639	101.88	101.53	102.15	-0.0054474	0.12212	0.00082914	NaN	21.686	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42505			29922	6502	20606	20646							0.12631296028121142
KATAHKPAPRK	11	Unmodified	_KATAHKPAPRK_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	602.867289	1203.72002	-0.20089	-0.00012111	-1.22	-0.00073549	-1.4209	-0.0008566	602.8666900090149	101.8	0.58302	101.67	101.41	102	-0.12666	-0.082361	-0.0002774	NaN	21.686	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45781			29923	6502	20606	20646							0.12631296028121142
KATAYILSV	9	Unmodified	_KATAYILSV_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2872009277344	2	483.286943	964.559333	-0.20183	-9.7544E-05	0.8865	0.00042843	0.68467	0.00033089	483.2868375365135	57.024	0.92438	57.024	56.535	57.459	0					85	25	6	0	0	0	0.071379	1	6405	6405		120.87	49.573	1	5223600			29924	5079	20607	20647	34441	34441					0.07563528591390423
KATAYILSV	9	Unmodified	_KATAYILSV_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2868957519531	2	483.286943	964.559333	0.11828	5.7165E-05	0.6893	0.00033313	0.80758	0.00039029	483.28667666896223	57.198	0.79509	57.034	56.675	57.471	-0.16432					80	21	6	0	0	0	0.086035	1	6389	6389		115.49	27.74	1	4348700			29925	5079	20607	20647	34442	34442					0.07563528591390423
KATAYILSV	9	Unmodified	_KATAYILSV_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.2873229980469	2	483.286943	964.559333	-0.43107	-0.00020833	2.295	0.0011091	1.8639	0.0009008	483.28691848290083	56.878	0.67506	56.973	56.717	57.392	0.09531					78	18	6	0	0	0	0.071379	1	6296	6296		120.87	54.439	1	4473700			29926	5079	20607	20647	34443	34443					0.07563528591390423
KATDILPK	8	Unmodified	_KATDILPK_					0	0	0		CREBBP-TRAP1|1|fusion;CREBBP-TRAP1|3|fusion;nc|ENSG00000126602|Q12931-2|TRAP1;CREBBP-TRAP1|2|fusion;ENSG00000126602|ENST00000246957|TRAP1	CREBBP-TRAP1|1|fusion	CREBBP-TRAP1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2741394042969	2	443.273835	884.533118	0.23706	0.00010508	-2.2534	-0.00099889	-2.0164	-0.00089381	443.2726918489222	49.816	1.1673	49.665	49.256	50.423	-0.1512					66	32	3	0	0	0	0.027866	1	5276	5276		15.642	12.483	1	1298800			29927	585	20608	20648	34444	34444					0.08623259419903206
KATDILPK	8	Unmodified	_KATDILPK_					0	0	0		CREBBP-TRAP1|1|fusion;CREBBP-TRAP1|3|fusion;nc|ENSG00000126602|Q12931-2|TRAP1;CREBBP-TRAP1|2|fusion;ENSG00000126602|ENST00000246957|TRAP1	CREBBP-TRAP1|1|fusion	CREBBP-TRAP1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.273835	884.533118	0.22149	9.8179E-05	-1.4896	-0.00066032	-1.2682	-0.00056214	443.2727447581026	49.586	0.91785	49.586	49.324	50.242	0	0.046355	0.0023536	NaN	5.9211	43	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1288800			29928	585	20608	20648							0.08623259419903206
KATDILPK	8	Unmodified	_KATDILPK_					0	0	0		CREBBP-TRAP1|1|fusion;CREBBP-TRAP1|3|fusion;nc|ENSG00000126602|Q12931-2|TRAP1;CREBBP-TRAP1|2|fusion;ENSG00000126602|ENST00000246957|TRAP1	CREBBP-TRAP1|1|fusion	CREBBP-TRAP1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.273835	884.533118	-1.4437	-0.00063996	-8.248	-0.0036561	-9.6917	-0.0042961	443.2700914195115	49.294	0.14865	49.368	49.242	49.391	0.074192	-0.17174	-0.0036379	NaN	5.9211	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229920			29929	585	20608	20648							0.08623259419903206
KATEKVVIPPL	11	Unmodified	_KATEKVVIPPL_					0	0	0		ENST00000522817.1_1_8:92082014-92082185:-|nuORF	ENST00000522817.1_1_8:92082014-92082185:-|nuORF	ENST00000522817.1_1_8:92082014-92082185:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.8556518554688	2	597.876456	1193.73836	-0.13536	-8.093E-05	-0.61543	-0.00036795	-0.75079	-0.00044888	597.8758155119345	92.371	0.119	92.23	92.171	92.29	-0.14131					4	2	2	0	0	0	0.024727	1	11335	11335		27.047	9.5793	1	24768			29930	16036	20609	20649	34445	34445					0.14923993159482052
KATSITVTG	9	Unmodified	_KATSITVTG_					0	0	0		ENSG00000173402|ENST00000308775|DAG1;DAG1|p.I773Sfs*70|1|0.27|ENSG00000173402|chr3:49532828-49532828|A/-|frameshift_variant	ENSG00000173402|ENST00000308775|DAG1	ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.2520751953125	2	439.2531	876.491647	-1.1335	-0.00049788	-0.11655	-5.1194E-05	-1.25	-0.00054908	439.2529593069474	90.17	0.99512	90.015	89.522	90.517	-0.1552					62	23	4	0	0	0	1.0019	1	11044	11044		19.997	0.6368	1	1935000			29931	621	20610	20650	34446	34446					0.04846078660591502
KATSLWLVS	9	Unmodified	_KATSLWLVS_					0	0	0			REV__ENST00000476329.1_1_1:35998986-36020116:-|nuORF	REV__ENST00000476329.1_1_1:35998986-36020116:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.768798828125	2	502.792392	1003.57023	-0.658	-0.00033084	-4.2497	-0.0021367	-4.9077	-0.0024675	502.79013573835465	29.514	0.56112	29.517	29.314	29.875	0.0031376					22	13	2	0	0	0	0.02435	1	1798	1798		19.997	0	1	472720	+		29932	33309	20611	20651	34447	34447					0.06858930965677246
KAVDIVKQVW	10	Unmodified	_KAVDIVKQVW_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.2881469726562	2	593.353148	1184.69174	-0.88021	-0.00052228	0.43627	0.00025886	-0.44394	-0.00026342	593.3532798999496	54.58	0.55042	54.434	54.173	54.724	-0.14609					35	14	3	0	0	0	0.03519	1	5797	5797		66.962	33.04	1	1184800			29933	18521	20612	20652	34448	34448					0.10678553328170892
KAVDIVKQVW	10	Unmodified	_KAVDIVKQVW_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.2874755859375	2	593.353148	1184.69174	0.38046	0.00022575	-0.72413	-0.00042967	-0.34367	-0.00020392	593.3525792816998	54.663	0.63361	54.457	54.197	54.831	-0.20613					38	16	4	0	0	0	0.03519	1	5789	5789		56.434	8.7765	1	980710			29934	18521	20612	20652	34449	34449					0.10678553328170892
KAVFLVPKW	9	Unmodified	_KAVFLVPKW_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2;nc|ENSG00000118873|Q9H2M9-2|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2584838867188	2	544.33677	1086.65899	-1.1521	-0.00062711	0.92598	0.00050404	-0.22609	-0.00012307	544.3370715366137	61.299	0.69561	61.041	60.809	61.505	-0.25725					34	16	3	0	0	0	0.024374	1	6840	6840		49.442	25.239	1	645520			29935	3706	20613	20653	34450	34450					0.11912390995985334
KAVFSILN	8	Unmodified	_KAVFSILN_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.2691345214844	2	446.268553	890.522553	-0.69568	-0.00031046	0.9431	0.00042088	0.24742	0.00011042	446.2688416787207	65.139	1.2264	65.139	64.8	66.026	0					81	33	4	0	0	0	0.91956	1	7701	7701		49.442	0	1	5940900			29936	8323	20614	20654	34451	34451					0.07291276765465682
KAVFSILN	8	Unmodified	_KAVFSILN_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2690734863281	2	446.268553	890.522553	-0.56936	-0.00025409	0.76989	0.00034358	0.20053	8.9489E-05	446.2687766010044	65.449	1.1266	65.176	64.825	65.951	-0.27282					68	30	4	0	0	0	0.68164	1	7707	7707		68.787	2.3575	1	5525300			29937	8323	20614	20654	34452	34452					0.07291276765465682
KAVFSILN	8	Unmodified	_KAVFSILN_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.2688293457031	2	446.268553	890.522553	-0.2923	-0.00013045	0.59588	0.00026592	0.30357	0.00013547	446.26869048453557	65.101	0.96535	65.138	64.854	65.82	0.037384					69	26	4	0	0	0	0.68164	2	7616	7616;7628		68.787	7.4465	1	4787000			29938	8323	20614	20654	34453;34454	34453					0.07291276765465682
KAVIIAMII	9	Unmodified	_KAVIIAMII_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2919006347656	2	486.319731	970.62491	0.33478	0.00016281	-2.2541	-0.0010962	-1.9193	-0.0009334	486.3186413341609	81.896	0.38212	81.667	81.437	81.819	-0.2289					15	8	3	0	0	0	0.024541	1	9853	9853		17.365	5.1581	1	69365			29939	4954	20615	20655	34455	34455					0.13842226512713296
KAVLGPGSHS	10	Unmodified	_KAVLGPGSHS_					0	0	0			REV__ENST00000488496.1_1_1:38059361-38061522:-|nuORF	REV__ENST00000488496.1_1_1:38059361-38061522:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.25433349609375	2	476.764166	951.513779	0.65787	0.00031365	-1.2401	-0.00059122	-0.5822	-0.00027757	476.7632222400194	22.493	0.55325	22.304	22.147	22.7	-0.18894					16	11	2	0	0	0	0.03519	1	791	791		26.693	6.2111	1	85009	+		29940	33647	20616	20656	34456	34456					0.036083031289990686
KAVLLLDNS	9	Unmodified	_KAVLLLDNS_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2617492675781	2	486.78985	971.565146	-1.1336	-0.00055181	-1.1743	-0.00057165	-2.3079	-0.0011235	486.7887983382234	46.436	0.48924	46.284	46.026	46.515	-0.15156					20	13	2	0	0	0	0.024405	1	4561	4561		44.117	31.91	1	182230			29941	9219	20617	20657	34457	34457					0.078226271030303
KAVLTPAVTK	10	Unmodified	_KAVLTPAVTK_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7498779296875	2	514.329142	1026.64373	-0.24498	-0.000126	-1.5801	-0.0008127	-1.8251	-0.0009387	514.3277929906942	41.03	0.4682	40.802	40.653	41.121	-0.2278					22	11	2	0	0	0	0.03519	1	3634	3634		24.519	8.8774	1	154760			29942	9697	20618	20658	34458	34458					0.13147479408121399
KAVRESGALD	10	Unmodified	_KAVRESGALD_					0	0	0			REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3095703125	2	523.285463	1044.55637	-1.1839	-0.00061951	-0.32556	-0.00017036	-1.5094	-0.00078987	523.2851957965509	32.734	0.71606	32.734	32.34	33.056	0					20	18	2	0	0	0	0.03519	1	2245	2245		77.318	8.5308	1	73079	+		29943	25782	20619	20659	34459	34459					0.03587653466570373
KAVSLQRKL	9	Unmodified	_KAVSLQRKL_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.8399047851562	2	521.840208	1041.66586	-0.63245	-0.00033004	0.3933	0.00020524	-0.23915	-0.0001248	521.8401714792589	25.773	0.56232	25.602	25.324	25.886	-0.17151					33	13	4	0	0	0	0.6238	1	1224	1224		51.193	5.2204	1	680400			29944	1552;18082;38204	20620	20660	34460	34460					0.14669703876575113
KAWNILALD	9	Unmodified	_KAWNILALD_					0	0	0		nc|ENSG00000153558|Q9UKC9-2|FBXL2;ENSG00000153558|ENST00000484457|FBXL2;ENST00000451636.5_1_3:33400471-33427097:+|nuORF	nc|ENSG00000153558|Q9UKC9-2|FBXL2	nc|ENSG00000153558|Q9UKC9-2|FBXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.8399047851562	2	522.297842	1042.58113	-0.86031	-0.00044934	-3.1869	-0.0016645	-4.0472	-0.0021138	522.2959407169624	25.808	0.37751	25.581	25.394	25.771	-0.22683					10	8	2	0	0	0	0.024261	1	1280	1280		30.318	4.7437	1	55072			29945	6349	20621	20661	34461	34461					0.061543333399413314
KAWNILALD	9	Unmodified	_KAWNILALD_					0	0	0		nc|ENSG00000153558|Q9UKC9-2|FBXL2;ENSG00000153558|ENST00000484457|FBXL2;ENST00000451636.5_1_3:33400471-33427097:+|nuORF	nc|ENSG00000153558|Q9UKC9-2|FBXL2	nc|ENSG00000153558|Q9UKC9-2|FBXL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.297842	1042.58113	-0.015442	-8.0652E-06	-3.4915	-0.0018236	-3.507	-0.0018317	522.2963304278115	25.571	0.25263	25.4	25.247	25.499	-0.17078	-0.089374	-0.0003575	NaN	30.318	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46094			29946	6349	20621	20661							0.061543333399413314
KAWNILALD	9	Unmodified	_KAWNILALD_					0	0	0		nc|ENSG00000153558|Q9UKC9-2|FBXL2;ENSG00000153558|ENST00000484457|FBXL2;ENST00000451636.5_1_3:33400471-33427097:+|nuORF	nc|ENSG00000153558|Q9UKC9-2|FBXL2	nc|ENSG00000153558|Q9UKC9-2|FBXL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.297842	1042.58113	-0.30642	-0.00016004	-2.9918	-0.0015626	-3.2982	-0.0017226	522.296343227015	25.659	0.21491	25.487	25.365	25.579	-0.17151	-0.0019229	0.00016455	NaN	30.318	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66152			29947	6349	20621	20661							0.061543333399413314
KAWPLSKSSFY	11	Unmodified	_KAWPLSKSSFY_					0	0	0		nc|ENSG00000163219|P42331-2|ARHGAP25	nc|ENSG00000163219|P42331-2|ARHGAP25	nc|ENSG00000163219|P42331-2|ARHGAP25	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.5661315917969	3	438.567801	1312.68157	-1.1075	-0.00048572	-1.9577	-0.0008586	-3.0652	-0.0013443	438.56691375139013	55.705	1.0303	55.548	55.145	56.176	-0.15655					82	27	5	0	0	0	1.0074	1	6014	6014		35.178	2.1388	1	4593400			29948	18443	20622	20662	34462	34462					0.037739456029612484
KAWPLSKSSFY	11	Unmodified	_KAWPLSKSSFY_					0	0	0		nc|ENSG00000163219|P42331-2|ARHGAP25	nc|ENSG00000163219|P42331-2|ARHGAP25	nc|ENSG00000163219|P42331-2|ARHGAP25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.5662841796875	3	438.567801	1312.68157	-0.1298	-5.6924E-05	-2.9673	-0.0013014	-3.0971	-0.0013583	438.5664482602084	55.719	0.94423	55.503	55.174	56.118	-0.21607					74	25	5	0	0	0	0.79085	1	6013	6013		58.246	12.338	1	4438900			29949	18443	20622	20662	34463	34463					0.037739456029612484
KAWSIVPL	8	Unmodified	_KAWSIVPL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7507629394531	2	457.278921	912.543289	-0.74691	-0.00034155	-3.1861	-0.0014569	-3.933	-0.0017985	457.277195520789	30.529	0.33221	30.529	30.384	30.717	0					13	7	2	0	0	0	0.027866	1	1956	1956		50.025	14.406	1	90289	+		29950	25017	20623	20663	34464	34464					0.08351867145120195
KAYEALYNF	9	Unmodified	_KAYEALYNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.7796020507812	2	559.779482	1117.54441	-0.18023	-0.00010089	-0.069179	-3.8725E-05	-0.24941	-0.00013961	559.7793853644425	60.113	0.65808	59.937	59.704	60.362	-0.1761					37	16	3	0	0	0	0.45795	1	6698	6698		62.107	14.45	1	1716500			29951	3189	20624	20664	34465	34465					-0.009659632766442883
KAYEALYNF	9	Unmodified	_KAYEALYNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.7791748046875	2	559.779482	1117.54441	-0.6422	-0.00035949	0.29751	0.00016654	-0.34468	-0.00019295	559.7797109058044	60.35	0.63216	60.097	59.831	60.463	-0.25373					45	15	4	0	0	0	0.16638	1	6705	6705		95.815	21.56	1	1589300			29952	3189	20624	20664	34466	34466					-0.009659632766442883
KAYEALYNF	9	Unmodified	_KAYEALYNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.779482	1117.54441	-0.093989	-5.2613E-05	-0.014705	-8.2314E-06	-0.10869	-6.0845E-05	559.7794777092367	60.361	0.6378	60.164	59.874	60.512	-0.19742	0.097788	-4.551E-05	NaN	95.815	45	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1634000			29953	3189	20624	20664							-0.009659632766442883
KAYGASKTF	9	Unmodified	_KAYGASKTF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7605895996094	2	486.761092	971.507631	-0.70589	-0.0003436	0.29707	0.0001446	-0.40882	-0.000199	486.7611172392932	25.723	0.65878	25.496	25.231	25.89	-0.22683					40	15	3	0	0	0	0.094442	3	1248	1238;1248;1258		112.41	37.946	1	3552600			29954	4600	20625	20665	34467;34468;34469	34468					0.020737848974818007
KAYGASKTF	9	Unmodified	_KAYGASKTF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7609558105469	2	486.761092	971.507631	-0.16858	-8.2058E-05	-0.12489	-6.079E-05	-0.29347	-0.00014285	486.7609209344604	25.52	0.73194	25.349	25.039	25.771	-0.17078					39	17	3	0	0	0	0.056725	2	1216	1204;1216		126.24	49.396	1	3068600			29955	4600	20625	20665	34470;34471	34471					0.020737848974818007
KAYGASKTF	9	Unmodified	_KAYGASKTF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7608642578125	2	486.761092	971.507631	0.11197	5.4503E-05	-0.50293	-0.00024481	-0.39096	-0.00019031	486.7607510757984	25.52	0.71367	25.348	25.076	25.79	-0.17151					41	16	3	0	0	0	0.094442	3	1193	1181;1193;1205		112.41	40.707	1	3360200			29956	4600	20625	20665	34472;34473;34474	34473					0.020737848974818007
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;TUBA1B|p.A289P|1|0.22|ENSG00000123416|chr12:49128449-49128449|C/G|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7822265625	2	537.782556	1073.55056	-1.1308	-0.00060812	0.29858	0.00016057	-0.8322	-0.00044755	537.7826078532162	32.923	1.3997	32.923	32.494	33.894	0					119	37	6	0	0	0	0.014738	5	2307	2307;2316;2327;2339;2353		163.15	48.377	1	14168000			29957	3976	20626	20666	34475;34476;34477;34478;34479	34475					0.01672554954870975
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;TUBA1B|p.A289P|1|0.22|ENSG00000123416|chr12:49128449-49128449|C/G|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7822875976562	2	537.782556	1073.55056	-1.0968	-0.00058986	0.28896	0.0001554	-0.80787	-0.00043446	537.7825892403392	32.752	1.3954	32.758	32.445	33.84	0.0066948					121	37	5	0	0	0	0.012922	5	2314	2267;2277;2287;2299;2314		172.25	84.552	1	14200000			29958	3976	20626	20666	34480;34481;34482;34483;34484	34484					0.01672554954870975
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;TUBA1B|p.A289P|1|0.22|ENSG00000123416|chr12:49128449-49128449|C/G|missense_variant	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7823486328125	2	537.782556	1073.55056	-0.64662	-0.00034774	-0.22768	-0.00012244	-0.8743	-0.00047018	537.7823712780158	32.607	1.653	32.67	32.085	33.738	0.062885					114	43	5	0	0	0	0.015032	5	2250	2204;2213;2224;2236;2250		190.26	68.086	1	11928000			29959	3976	20626	20666	34485;34486;34487;34488;34489	34489					0.01672554954870975
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7899169921875	2	544.790381	1087.56621	-1.0306	-0.00056147	0.20066	0.00010932	-0.82995	-0.00045215	544.790461993517	33.555	1.3778	33.555	33.174	34.552	0					97	36	5	0	0	0	0.013337	4	2427	2427;2437;2449;2462		176.44	80.63	1	5938500			29960	7700	20627	20667	34490;34491;34492;34493	34490					0.02592841471914653
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7898559570312	2	544.790381	1087.56621	-1.2673	-0.00069043	0.37682	0.00020529	-0.89051	-0.00048514	544.7905481969323	33.375	1.2673	33.382	33.005	34.272	0.0066261					88	33	5	0	0	0	0.014738	4	2396	2375;2385;2396;2409		190.26	82.174	1	6980900			29961	7700	20627	20667	34494;34495;34496;34497	34496					0.02592841471914653
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7896118164062	2	544.790381	1087.56621	-0.2895	-0.00015771	-0.50581	-0.00027556	-0.79531	-0.00043328	544.7901055905867	33.313	1.4547	33.37	32.956	34.411	0.056568					92	37	5	0	0	0	0.034407	4	2364	2330;2342;2353;2364		138.06	34.318	1	5630300			29962	7700	20627	20667	34498;34499;34500;34501	34501					0.02592841471914653
KAYNIEQSL	9	Unmodified	_KAYNIEQSL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2977905273438	2	533.282389	1064.55022	-0.22507	-0.00012002	0.16319	8.7028E-05	-0.061874	-3.2996E-05	533.282333082817	34.583	0.68302	34.359	34.142	34.825	-0.22412					22	16	2	0	0	0	0.024484	1	2570	2570		37.812	0	1	262750	+		29963	20141	20628	20668	34502	34502					0.020531352350417365
KAYPIVPEP	9	Unmodified	_KAYPIVPEP_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.30035400390625	2	507.286943	1012.55933	-0.67113	-0.00034045	1.1017	0.00055889	0.4306	0.00021844	507.2875309181334	32.636	0.36808	32.648	32.45	32.818	0.011799					17	9	2	0	0	0	0.024323	1	2261	2261		44.117	0	1	828500	+		29964	23871	20629	20669	34503	34503					0.05355528591371694
KAYSEAHEI	9	Unmodified	_KAYSEAHEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2586059570312	2	524.258914	1046.50327	-0.9208	-0.00048274	0.1533	8.0367E-05	-0.7675	-0.00040237	524.2589653665094	26.331	1.0045	26.331	25.737	26.741	0					72	23	5	0	0	0	0.013293	3	1333	1322;1333;1345		209.84	94.346	1	4146700			29965	8005	20630	20670	34504;34505;34506	34505					-0.018117243160986618
KAYSEAHEI	9	Unmodified	_KAYSEAHEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2587890625	2	524.258914	1046.50327	-0.67962	-0.0003563	-0.17119	-8.9748E-05	-0.85082	-0.00044605	524.2587750177612	26.331	0.94696	26.308	25.954	26.901	-0.023088					69	22	5	0	0	0	0.014454	3	1323	1313;1323;1337		185.55	70.056	1	4356200			29966	8005	20630	20670	34507;34508;34509	34508					-0.018117243160986618
KAYSEAHEI	9	Unmodified	_KAYSEAHEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2584228515625	2	524.258914	1046.50327	-0.0079228	-4.1536E-06	-0.92599	-0.00048546	-0.93391	-0.00048961	524.2583878778684	26.112	1.0798	26.193	25.88	26.96	0.081291					82	25	5	0	0	0	0.015064	3	1254	1244;1254;1267		200.16	87.746	1	4039700			29967	8005	20630	20670	34510;34511;34512	34511					-0.018117243160986618
KAYSEAHEI	9	Unmodified	_KAYSEAHEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.258914	1046.50327	-0.93358	-0.00048944	1.5884	0.00083276	0.65486	0.00034332	524.259663804645	26.449	0.40028	26.213	25.977	26.378	-0.23603	-0.0021772	0.00169	NaN	185.55	31	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812960			29968	8005	20630	20670							-0.018117243160986618
KAYSEAHEI	9	Unmodified	_KAYSEAHEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.258914	1046.50327	-0.21529	-0.00011287	0.96697	0.00050694	0.75167	0.00039407	524.2592629299629	26.202	0.48696	26.034	25.737	26.224	-0.16816	-0.18142	0.0010384	NaN	185.55	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802810			29969	8005	20630	20670							-0.018117243160986618
KAYSEAHEI	9	Unmodified	_KAYSEAHEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.258914	1046.50327	-0.86384	-0.00045287	1.4652	0.00076814	0.60136	0.00031527	524.259632631416	26.376	0.42158	26.213	25.922	26.344	-0.16331	-0.0022144	0.0015608	NaN	185.55	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	986690			29970	8005	20630	20670							-0.018117243160986618
KCCHTQVW	8	Unmodified	_KCCHTQVW_					0	0	0			REV__ENST00000341935.9_3_6:167536330-167536444:+|nuORF	REV__ENST00000341935.9_3_6:167536330-167536444:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.3182373046875	2	502.725672	1003.43679	-0.31626	-0.00015899	3.3736	0.001696	3.0573	0.001537	502.72725884966894	52.772	0.48258	52.582	52.348	52.831	-0.18982					17	11	2	0	0	0	0.027866	1	5454	5454		45.952	7.1458	1	152390	+		29971	30641	20631	20671	34513	34513					-0.06478954683359461
KCCQISIEEGK	11	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))CQISIEEGK_	KC(0.893)C(0.107)QISIEEGK		KC(9.2)C(-9.2)QISIEEGK		0	1	0		ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	ENST00000480032.4_1_2:166152333-166226884:+|nuORF	ENST00000480032.4_1_2:166152333-166226884:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	647.8131103515625	2	647.81013	1293.60571	-0.23617	-0.00015299	1.3194	0.00085473	1.0832	0.00070173	647.810981527909	62.734	1.7846	62.55	62.185	63.97	-0.18386					103	50	3	0	0	0	0.94988	2	7104	7080;7104		47.96	7.514	2	10315000			29972	5026	20632	20672	34514;34515	34515	63				-0.029351426311677642
KCFHLLKK	8	Unmodified	_KCFHLLKK_					0	0	0		ENST00000252725.9_1_7:98992108-98992360:+|nuORF	ENST00000252725.9_1_7:98992108-98992360:+|nuORF	ENST00000252725.9_1_7:98992108-98992360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.769287109375	2	508.807322	1015.60009	-0.20702	-0.00010534	2.5012	0.0012726	2.2941	0.0011673	508.8084627187654	42.099	0.56656	42.125	41.893	42.459	0.026012					29	16	2	0	0	0	0.027866	1	3797	3797		33.516	20.062	1	1551000			29973	11361	20633	20673	34516	34516					0.09291591430019253
KCFLSTVM	8	Unmodified	_KCFLSTVM_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.7786560058594	2	464.735174	927.455795	-0.51749	-0.0002405	-0.65305	-0.00030349	-1.1705	-0.00054399	464.7338849411666	32.855	0.20284	32.69	32.597	32.8	-0.16565					7	4	2	0	0	0	0.027866	1	2275	2275		25.45	2.4077	1	136490	+		29974	28441	20634	20674	34517	34517					-0.01083418112284562
KCFLSTVM	8	Unmodified	_KCFLSTVM_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.735174	927.455795	0.012809	5.953E-06	-2.0324	-0.00094451	-2.0195	-0.00093855	464.73415725791995	33.077	0.16416	32.877	32.813	32.977	-0.20019	0.093401	-0.00083511	NaN	25.45	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80282	+		29975	28441	20634	20674							-0.01083418112284562
KCFNTQAL	8	Unmodified	_KCFNTQAL_					0	0	0			REV__ENSG00000143162|ENST00000370509|CREG1	REV__ENSG00000143162|ENST00000370509|CREG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7560729980469	2	462.73402	923.453487	0.12601	5.8309E-05	0.083639	3.8703E-05	0.20965	9.7012E-05	462.7343790969269	40.454	0.17012	40.454	40.381	40.551	0					5	4	2	0	0	0	0.027866	1	3553	3553		24.203	0	1	36005	+		29976	24206	20635	20675	34518	34518					-0.011301305257461536
KCGPQQTHCV	10	Unmodified	_KCGPQQTHCV_					0	0	0			REV__ENSG00000176402|ENST00000312891|GJC3	REV__ENSG00000176402|ENST00000312891|GJC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.302490234375	2	550.752418	1099.49028	1.0607	0.0005842	1.361	0.00074957	2.4217	0.0013338	550.7530308379947	97.714	0.56914	97.59	97.243	97.812	-0.12368					19	12	2	0	0	0	0.03519	1	12110	12110		29.17	12.697	1	168310	+		29977	27017	20636	20676	34519	34519					-0.05548201971487288
KCIDKVDI	8	Unmodified	_KCIDKVDI_					0	0	0			REV__ENST00000526814.5_1_10:96827199-96829036:-|nuORF	REV__ENST00000526814.5_1_10:96827199-96829036:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.25567626953125	2	467.257328	932.500103	-0.206	-9.6256E-05	-3.375	-0.001577	-3.581	-0.0016733	467.2556601692759	76.552	1.5436	76.323	75.815	77.358	-0.22843					107	37	4	0	0	0	0.32162	1	9358	9358		108.09	17.311	1	3020000	+		29978	23823	20637	20677	34520	34520					0.031153093055309
KCIIWTVSEY	10	Unmodified	_KCIIWTVSEY_					0	0	0			REV__ENSG00000133742|ENST00000523022|CA1	REV__ENSG00000133742|ENST00000523022|CA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3140258789062	2	621.315374	1240.6162	0.018917	1.1754E-05	-3.0174	-0.0018748	-2.9985	-0.001863	621.3134783770568	66.633	3.4513	66.385	66.061	69.512	-0.24839					161	90	2	0	0	0	0.79525	1	7651	7651		60.972	0	1	29011000	+		29979	23392	20638	20678	34521	34521					0.005512080855851309
KCIIWTVSEY	10	Unmodified	_KCIIWTVSEY_					0	0	0			REV__ENSG00000133742|ENST00000523022|CA1	REV__ENSG00000133742|ENST00000523022|CA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3143310546875	2	621.315374	1240.6162	-0.33526	-0.0002083	-2.6485	-0.0016456	-2.9838	-0.0018539	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.941	1	7692	7692		51.335	1.8939	1	26099000	+		29980	23392	20638	20678	34522	34522					0.005512080855851309
KCKGEGASAD	10	Unmodified	_KCKGEGASAD_					0	0	0			REV__ENST00000246553.3_1_19:35843468-35843927:+|nuORF	REV__ENST00000246553.3_1_19:35843468-35843927:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2195739746094	2	483.221474	964.428395	-0.08648	-4.1789E-05	-3.4579	-0.0016709	-3.5443	-0.0017127	483.21965369287017	32.256	0.70733	32.098	31.737	32.444	-0.15772					37	16	3	0	0	0	0.75651	1	2197	2197		63.534	5.3039	1	955360	+		29981	29476	20639	20679	34523	34523					-0.055242301189764476
KCKGQLLIF	9	Unmodified	_KCKGQLLIF_					0	0	0		ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2870483398438	2	525.312438	1048.61032	-0.75398	-0.00039608	-0.091328	-4.7976E-05	-0.84531	-0.00044405	525.3122104153297	82.202	0.64435	82.062	81.659	82.303	-0.14014					39	14	4	0	0	0	0.024541	1	9895	9895		10.866	0	1	161270			29982	8864	20640	20680	34524	34524					0.08796154364586073
KCKPLSVIL	9	Unmodified	_KCKPLSVIL_					0	0	0			REV__nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	REV__nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.78961181640625	2	500.814813	999.615073	0.050052	2.5067E-05	2.4329	0.0012184	2.4829	0.0012435	500.8161740998678	92.827	0.17157	92.835	92.715	92.887	0.0077286					6	3	2	0	0	0	0.024457	1	11699	11699		29.15	1.2673	1	27768	+		29983	37215	20641	20681	34525	34525					0.11525038507352292
KCLLVVISL	9	Unmodified	_KCLLVVISL_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.30108642578125	2	494.317189	986.619824	0.59416	0.0002937	2.4634	0.0012177	3.0576	0.0015114	494.31827161619543	96.134	0.66644	96.14	95.862	96.528	0.0065002					30	15	3	0	0	0	0.024427	1	12183	12183		26.693	4.733	1	186070	+		29984	26519	20642	20682	34526	34526					0.12597922650115834
KCLMMRLFL	9	Unmodified	_KCLMMRLFL_					0	0	0		ENST00000443070.5_1_2:74000944-74001010:-|nuORF	ENST00000443070.5_1_2:74000944-74001010:-|nuORF	ENST00000443070.5_1_2:74000944-74001010:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.26904296875	2	577.815976	1153.6174	-0.14674	-8.4788E-05	-3.9931	-0.0023073	-4.1398	-0.0023921	577.8132751418722	63.828	0.50085	63.6	63.366	63.866	-0.22773					28	12	3	0	0	0	0.024381	1	7228	7228		37.159	0	1	262220			29985	14393	20643	20683	34527	34527					0.04673427649140649
KCLQDQNTY	9	Unmodified	_KCLQDQNTY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2294921875	2	556.755681	1111.49681	-0.32902	-0.00018318	-2.3704	-0.0013197	-2.6994	-0.0015029	556.7542781185749	43.158	0.61142	42.92	42.6	43.211	-0.23737					31	15	3	0	0	0	0.024319	1	3966	3966		39.253	0	1	867400			29986	6479	20644	20684	34528	34528					-0.05447985539126421
KCLQLENKN	9	Unmodified	_KCLQLENKN_					0	0	0		nc|ENSG00000073803|O43283-4|MAP3K13	nc|ENSG00000073803|O43283-4|MAP3K13	nc|ENSG00000073803|O43283-4|MAP3K13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7957763671875	2	545.289691	1088.56483	-1.5673	-0.00085462	-0.025299	-1.3795E-05	-1.5926	-0.00086841	545.2895994563412	54.969	0.79154	55.067	54.916	55.707	0.098015					31	21	2	0	0	0	0.020937	1	5959	5959		87.696	2.5356	1	285750			29987	18079	20645	20685	34529	34529					0.024088841115371906
KCLQLLGNL	9	Unmodified	_KCLQLLGNL_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.30474853515625	2	501.294245	1000.57394	-0.25957	-0.00013012	-2.8005	-0.0014039	-3.0601	-0.001534	501.29268593868323	58.918	1.2571	58.73	58.05	59.307	-0.18795					68	30	4	0	0	0	0.024405	1	6471	6471		27.882	0	1	2035400			29988	6076	20646	20686	34530	34530					0.07367277467881195
KCLQLLGNL	9	Unmodified	_KCLQLLGNL_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.30413818359375	2	501.294245	1000.57394	0.1662	8.3313E-05	-3.356	-0.0016823	-3.1898	-0.001599	501.2924079459145	58.871	1.1746	58.689	58.101	59.276	-0.18134					51	28	3	0	0	0	0.024457	1	6497	6497		37.159	2.9866	1	2116900			29989	6076	20646	20686	34531	34531					0.07367277467881195
KCNEQCALL	9	Unmodified	_KCNEQCALL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7691345214844	2	511.243895	1020.47324	-0.29975	-0.00015324	3.249	0.001661	2.9492	0.0015078	511.24428330434955	85.721	1.0528	85.663	85.228	86.28	-0.05761					42	24	3	0	0	0	0.023239	1	10799	10799		96.19	32.657	1	210260	+		29990	23178	20647	20687	34532	34532					-0.03618122577302074
KCNERGPVL	9	Unmodified	_KCNERGPVL_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2929382324219	2	508.271301	1014.52805	-0.30709	-0.00015609	0.32918	0.00016731	0.022087	1.1226E-05	508.2712769412616	64.43	0.47059	64.196	63.943	64.413	-0.2345					17	11	2	0	0	0	0.024344	1	7343	7343		54.776	14.204	1	269780	+		29991	25869	20648	20688	34533	34533					0.02136632285646556
KCNERGPVL	9	Unmodified	_KCNERGPVL_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.271301	1014.52805	-0.16067	-8.1662E-05	-0.1358	-6.9023E-05	-0.29647	-0.00015069	508.27101514935754	64.446	0.42943	64.244	63.951	64.38	-0.20254	0.019515	-0.00054848	NaN	23.523	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207060	+		29992	25869	20648	20688							0.02136632285646556
KCNLLLAGVV	10	Unmodified	_KCNLLLAGVV_					0	0	0		ENST00000358951.6_1_1:220386241-220386295:-|nuORF	ENST00000358951.6_1_1:220386241-220386295:-|nuORF	ENST00000358951.6_1_1:220386241-220386295:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3080444335938	2	515.309895	1028.60524	0.37565	0.00019358	-3.662	-0.0018871	-3.2864	-0.0016935	515.3078653292357	87.383	1.0616	87.404	87.051	88.113	0.021263					90	25	4	0	0	0	0.55296	1	10994	10994		82.305	0.064519	1	1372100			29993	12728	20649	20689	34534	34534					0.09207850501957182
KCNRETVLGG	10	Unmodified	_KCNRETVLGG_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|91|1|anti-sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|91|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3052368164062	2	538.77949	1075.54443	0.39078	0.00021054	1.2136	0.00065384	1.6043	0.00086438	539.2818049634062	85.775	0.8924	85.626	85.072	85.964	-0.14967					25	20	2	0	0	0	0.03519	1	10441	10441		69.628	6.3214	1	59726	+		29994	36108	20650	20690	34535	34535					0.009677134517232844
KCPWAAPP	8	Unmodified	_KCPWAAPP_					0	0	0			REV__ENST00000531733.1_1_8:11666026-11667401:+|nuORF	REV__ENST00000531733.1_1_8:11666026-11667401:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7554626464844	2	435.220549	868.426544	0.91392	0.00039776	0.36775	0.00016005	1.2817	0.00055781	435.2195838063202	63.504	0.29333	63.504	63.373	63.666	0					11	7	3	0	0	0	0.027866	1	7445	7445		14.664	0	1	53086	+		29995	34561	20651	20691	34536	34536					-0.012931943462831441
KCQKMVVKL	9	Unmodified	_KCQKMVVKL_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7922973632812	2	538.819573	1075.62459	-0.0078408	-4.2248E-06	1.9639	0.0010582	1.956	0.0010539	538.8205530648427	66.114	0.54214	66.114	65.681	66.224	0					27	13	3	0	0	0	0.024263	1	7801	7801		51.335	3.6781	1	996700	+		29996	24196	20652	20692	34537	34537					0.08980483521236238
KCQKMVVKL	9	Unmodified	_KCQKMVVKL_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.819573	1075.62459	-0.53927	-0.00029057	3.3433	0.0018014	2.8041	0.0015109	538.8212738480446	66.454	0.46326	66.205	65.94	66.404	-0.24839	0.057907	0.00022775	NaN	51.335	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264260	+		29997	24196	20652	20692							0.08980483521236238
KCQKMVVKL	9	Unmodified	_KCQKMVVKL_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.819573	1075.62459	-0.91183	-0.00049131	3.8091	0.0020524	2.8973	0.0015611	538.821445940278	66.344	0.49856	66.131	65.915	66.414	-0.21327	-0.016399	0.00072973	NaN	51.335	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305760	+		29998	24196	20652	20692							0.08980483521236238
KCQKMVVKL	9	Unmodified	_KCQKMVVKL_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.819573	1075.62459	-1.2309	-0.00066325	3.964	0.0021359	2.733	0.0014726	538.8216337269023	66.365	0.53446	66.12	65.851	66.386	-0.24517	-0.027805	0.00089659	NaN	51.335	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340060	+		29999	24196	20652	20692							0.08980483521236238
KCQSSFSEN	9	Unmodified	_KCQSSFSEN_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3038330078125	2	515.218931	1028.42331	-1.5738	-0.00081085	0.43361	0.00022341	-1.1402	-0.00058744	515.2188971842942	29.644	0.36672	29.644	29.447	29.814	0					11	8	2	0	0	0	0.024344	1	1855	1855		54.776	21.261	1	36899			30000	6479	20653	20693	34538	34538					-0.0897653398158127
KCRYTGSL	8	Unmodified	_KCRYTGSL_					0	0	0			REV__ENSG00000105376|ENST00000221980|ICAM5	REV__ENSG00000105376|ENST00000221980|ICAM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.7786560058594	2	464.23947	926.464386	-0.37928	-0.00017607	-3.8328	-0.0017794	-4.2121	-0.0019554	464.2378277776603	32.782	0.44447	32.617	32.355	32.8	-0.16565					15	10	2	0	0	0	0.027866	1	2275	2275		17.365	0.89182	1	221650	+		30001	21520	20654	20694	34539	34539					-0.00178728151456653
KCSSKRSSI	9	Unmodified	_KCSSKRSSI_					0	0	0		ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	MSMS	OPSCC_40_ClassI_Rep-1	4	498.2618408203125	2	498.268758	994.522964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.94	1	105.82	105.32	106.32	-0.1238								0	0	0	0.64234	1	13189	13189		32.751	0.79567	1				30002	5356	20655	20695	34540	34540					0.02548328423017665
KCTFIILTL	9	Unmodified	_KCTFIILTL_					0	0	0			REV__ENSG00000112149|ENST00000379153|CD83	REV__ENSG00000112149|ENST00000379153|CD83	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.3147583007812	2	526.314646	1050.61474	-0.48826	-0.00025698	0.19756	0.00010398	-0.29069	-0.000153	526.3146636815833	74.805	2.303	74.805	74.128	76.431	0					194	58	5	0	0	0	0.56934	1	9259	9259		54.776	1.4249	1	16285000	+		30003	21972	20656	20696	34541	34541					0.09145618787488274
KCTKSKARQY	10	Unmodified	_KCTKSKARQY_					0	0	0			REV__nc|ENSG00000188611|Q9NR71-2|ASAH2	REV__nc|ENSG00000188611|Q9NR71-2|ASAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.8880615234375	3	404.888768	1211.64448	0.82553	0.00033425	-3.6087	-0.0014611	-2.7831	-0.0011269	404.887328288748	22.494	0.59839	22.305	22.055	22.653	-0.18894					44	12	5	0	0	0	0.78327	1	800	800		61.765	10.572	1	1597000	+		30004	37040	20657	20697	34542	34542					0.047119507855313714
KCTPLLAGPM	10	Unmodified	_KCTPLLAGPM_					0	0	0			REV__DPEP1|p.P363Rfs*92|1|0.17|ENSG00000015413|chr16:89638072-89638127|TCCCGAGGAGGAGCCCATCCCGCTGGACCAGCTGGGTGGCTCCTGCAGGACCCATT/-|frameshift_variant	REV__DPEP1|p.P363Rfs*92|1|0.17|ENSG00000015413|chr16:89638072-89638127|TCCCGAGGAGGAGCCCATCCCGCTGGACCAGCTGGGTGGCTCCTGCAGGACCCATT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7730712890625	2	515.774831	1029.53511	-0.80413	-0.00041475	0.10324	5.325E-05	-0.70089	-0.0003615	515.7748295675646	66.716	0.58585	66.746	66.491	67.077	0.030106					33	13	3	0	0	0	1.089	1	7865	7865		34.173	7.3764	1	2407100	+		30005	19702	20658	20698	34543	34543					0.021522288418282187
KCTRFLVNL	9	Unmodified	_KCTRFLVNL_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7761840820312	2	547.312969	1092.61138	-0.14609	-7.9956E-05	-2.2795	-0.0012476	-2.4256	-0.0013276	547.8131282989885	52.632	0.20023	52.484	52.406	52.607	-0.14723					6	4	2	0	0	0	0.023655	1	5617	5617		79.713	32.055	1	30144	+		30006	23271	20659	20699	34544	34544					0.0687836873348715
KCVAKLGPQ	9	Unmodified	_KCVAKLGPQ_					0	0	0		SCGB3A1|p.E81K|1|0.45|ENSG00000161055|chr5:180590650-180590650|C/T|missense_variant	SCGB3A1|p.E81K|1|0.45|ENSG00000161055|chr5:180590650-180590650|C/T|missense_variant	SCGB3A1|p.E81K|1|0.45|ENSG00000161055|chr5:180590650-180590650|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3103332519531	2	472.273312	942.532072	1.1374	0.00053715	-1.3781	-0.00065082	-0.24067	-0.00011366	472.2726019494067	19.94	0.48747	19.74	19.455	19.943	-0.2001					13	9	2	0	0	0	0.024506	1	450	450		16.473	0	1	31993			30007	37857	20660	20700	34545	34545					0.05850721779347623
KCVDTLDFWF	10	Unmodified	_KCVDTLDFWF_					0	0	0		ENSG00000168646|ENST00000307078|AXIN2;ENST00000577662.1_1_17:63534239-63554825:-|nuORF	ENSG00000168646|ENST00000307078|AXIN2	ENSG00000168646|ENST00000307078|AXIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.20147705078125	3	425.202242	1272.5849	0.010141	4.3121E-06	-0.42177	-0.00017934	-0.41163	-0.00017503	425.20192278006704	34.417	0.95677	34.21	33.895	34.852	-0.20696					51	23	4	0	0	0	1.1081	1	2527	2527		31.634	0	1	1481600			30008	7849	20661	20701	34546	34546					-0.04049364948514267
KCVMSGSQVK	10	Unmodified	_KCVMSGSQVK_					0	0	0		ENST00000409461.5_1_12:110940142-110945898:+|nuORF;nc|ENSG00000151164|Q6WBX8-1|RAD9B;ENSG00000151164|ENST00000409300|RAD9B;nc|ENSG00000151164|Q6WBX8|RAD9B	ENST00000409461.5_1_12:110940142-110945898:+|nuORF	ENST00000409461.5_1_12:110940142-110945898:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7742309570312	2	533.772819	1065.53109	0.18634	9.9463E-05	2.735	0.0014598	2.9213	0.0015593	533.7743324061715	50.858	1.1744	50.678	50.353	51.527	-0.18071					71	30	4	0	0	0	0.56936	1	5185	5185		80.455	23.734	1	3110800			30009	6184	20662	20702	34547	34547					0.0009413934815256653
KCVSLKPKLD	10	Unmodified	_KCVSLKPKLD_					0	0	0			REV__ENST00000552460.1_1_12:104345303-104349535:-|nuORF	REV__ENST00000552460.1_1_12:104345303-104349535:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.3139038085938	2	565.833734	1129.65292	-0.92168	-0.00052152	-0.75608	-0.00042781	-1.6778	-0.00094933	565.8321719178297	36.415	0.17575	36.373	36.315	36.491	-0.042454					5	4	2	0	0	0	0.03519	1	2869	2869		22.58	0	1	103230	+		30010	34953	20663	20703	34548	34548					0.09327504702173428
KCVVTKEGSI	10	Unmodified	_KCVVTKEGSI_					0	0	0			REV__ENST00000484112.5_1_7:99037182-99048419:+|nuORF	REV__ENST00000484112.5_1_7:99037182-99048419:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.295166015625	2	532.294442	1062.57433	-0.78453	-0.0004176	1.4406	0.00076684	0.65609	0.00034924	532.295056097038	95.827	1.6725	95.827	95.519	97.191	0					50	38	2	0	0	0	0.03519	1	12310	12310		42.864	0	1	610950	+		30011	25360	20664	20704	34549	34549					0.04554652397064274
KCYMTCND	8	Unmodified	_KCYMTCND_					0	0	0		ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.81207275390625	2	489.179906	976.345259	-0.95197	-0.00046568	-0.10946	-5.3545E-05	-1.0614	-0.00051923	489.1797935229321	25.926	0.40761	25.69	25.508	25.916	-0.23603					12	9	2	0	0	0	0.027866	1	1260	1260		16.473	0	1	66343			30012	9734	20665	20705	34550	34550					-0.14386006162840204
KDAAKTWKTTT	11	Unmodified	_KDAAKTWKTTT_					0	0	0		ENST00000415560.1_1_X:26766244-26766466:+|nuORF	ENST00000415560.1_1_X:26766244-26766466:+|nuORF	ENST00000415560.1_1_X:26766244-26766466:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.894775390625	3	417.562827	1249.66665	-0.49966	-0.00020864	1.8249	0.00076202	1.3253	0.00055338	417.5635787895646	30.211	0.38449	29.967	29.737	30.122	-0.24415					20	8	3	0	0	0	0.02473	1	1907	1907		15.921	0	1	156260			30013	13879	20666	20706	34551	34551					0.05180453734942603
KDAAWVRGP	9	Unmodified	_KDAAWVRGP_					0	0	0			REV__ENST00000526048.1_1_11:64881042-64882849:+|nuORF	REV__ENST00000526048.1_1_11:64881042-64882849:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.273193359375	2	500.272158	998.529764	5.367	0.0026849	-1.9129	-0.00095696	3.4541	0.001728	500.2708989861862	16.868	0.24456	16.925	16.806	17.051	0.057352					14	9	3	0	0	0	0.98128	1	88	88		24.203	2.2429	1	23968	+		30014	34429	20667	20707	34552	34552					0.03044009365896727
KDAAWVRGP	9	Unmodified	_KDAAWVRGP_					0	0	0			REV__ENST00000526048.1_1_11:64881042-64882849:+|nuORF	REV__ENST00000526048.1_1_11:64881042-64882849:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	500.272158	998.529764	5.367	0.0026849	-1.9129	-0.00095696	3.4541	0.001728	500.2708989861862	16.868	0.24456	16.925	16.806	17.051	0.057352	0.060749	-0.0030924	NaN	24.203	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23968	+		30015	34429	20667	20707							0.03044009365896727
KDAEEKLTF	9	Unmodified	_KDAEEKLTF_					0	0	0		nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171;CCDC171|p.M693Nfs*5|1|0.1|ENSG00000164989|chr9:15744300-15744301|-/AT|frameshift_variant;CCDC171|p.M693Ifs*7|1|0.09|ENSG00000164989|chr9:15744302-15744303|GG/-|frameshift_variant	nc|ENSG00000164989|Q6TFL3-3|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8109130859375	2	540.782222	1079.54989	-0.54266	-0.00029346	-1.8281	-0.00098858	-2.3707	-0.001282	540.7820718059891	62.185	0.19939	61.971	61.813	62.012	-0.21375					7	4	2	0	0	0	0.024405	1	6980	6980		27.882	1.1893	1	56225			30016	7354	20668	20708	34553	34553					0.013297155151803963
KDAEKFARG	9	Unmodified	_KDAEKFARG_					0	0	0		ANKLE2|p.E244K|1|0.27|ENSG00000176915|chr12:132750760-132750760|C/T|missense_variant	ANKLE2|p.E244K|1|0.27|ENSG00000176915|chr12:132750760-132750760|C/T|missense_variant	ANKLE2|p.E244K|1|0.27|ENSG00000176915|chr12:132750760-132750760|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.25665283203125	2	511.274898	1020.53524	-1.2323	-0.00063004	2.0966	0.0010719	0.86431	0.0004419	511.2734662844409	37.847	0.34769	37.765	37.57	37.918	-0.082516					22	9	3	0	0	0	0.024447	1	3103	3103		19.104	0	1	80276			30017	89	20669	20709	34554	34554					0.0257968815770937
KDAENKVK	8	Unmodified	_KDAENKVK_					0	0	0		ENSG00000242362|ENST00000458218|CT47A2;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000224089|ENST00000430448|CT47A10;ENSG00000278646|ENST00000613352|unknown;ENSG00000277535|ENST00000620151|CT47C1	ENSG00000242362|ENST00000458218|CT47A2	ENSG00000242362|ENST00000458218|CT47A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7529296875	2	466.263999	930.513445	-0.38019	-0.00017727	-0.35117	-0.00016374	-0.73136	-0.00034101	466.26383152060015	42.908	1.3408	42.908	42.424	43.765	0					57	36	4	0	0	0	0.027866	1	4085	4085		42.396	1.618	1	923380			30018	10646	20670	20710	34555	34555					0.04540883409140406
KDAENKVK	8	Unmodified	_KDAENKVK_					0	0	0		ENSG00000242362|ENST00000458218|CT47A2;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000224089|ENST00000430448|CT47A10;ENSG00000278646|ENST00000613352|unknown;ENSG00000277535|ENST00000620151|CT47C1	ENSG00000242362|ENST00000458218|CT47A2	ENSG00000242362|ENST00000458218|CT47A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.263999	930.513445	-0.01509	-7.036E-06	-0.072785	-3.3937E-05	-0.087875	-4.0973E-05	466.2637471037191	43.109	0.79966	42.97	42.558	43.358	-0.13929	0.0072874	0.00054193	NaN	9.1829	43	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1043700			30019	10646	20670	20710							0.04540883409140406
KDAENKVK	8	Unmodified	_KDAENKVK_					0	0	0		ENSG00000242362|ENST00000458218|CT47A2;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000224089|ENST00000430448|CT47A10;ENSG00000278646|ENST00000613352|unknown;ENSG00000277535|ENST00000620151|CT47C1	ENSG00000242362|ENST00000458218|CT47A2	ENSG00000242362|ENST00000458218|CT47A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.263999	930.513445	1.105	0.00051522	-1.321	-0.00061591	-0.21597	-0.0001007	466.2631492155062	42.979	0.84032	43.01	42.609	43.45	0.030827	0.047296	-0.00062203	NaN	9.1829	46	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886030			30020	10646	20670	20710							0.04540883409140406
KDAFKAGGLI	10	Unmodified	_KDAFKAGGLI_					0	0	0			REV__ENST00000426382.2_1_X:67290686-67290992:-|nuORF	REV__ENST00000426382.2_1_X:67290686-67290992:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.3103942871094	2	510.297842	1018.58113	0.089962	4.5907E-05	-3.5469	-0.00181	-3.4569	-0.0017641	510.29621451625695	77.454	2.8216	77.192	77.028	79.849	-0.26202					86	66	2	0	0	0	0.03519	1	9244	9244		32.812	10.853	1	153510	+		30021	32272	20671	20711	34556	34556					0.07258333339962064
KDAFVLEID	9	Unmodified	_KDAFVLEID_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2766723632812	2	525.279315	1048.54408	-0.76325	-0.00040092	1.4169	0.00074429	0.65369	0.00034337	525.2799599361405	94.814	0.68808	94.814	94.362	95.05	0					19	15	2	0	0	0	0.024323	1	12045	12045		44.117	0	1	51515			30022	3145	20672	20712	34557	34557					0.021746170035157775
KDAGKWND	8	Unmodified	_KDAGKWND_					0	0	0		ENSG00000188404|ENST00000236147|SELL;nc|ENSG00000188404|P14151-2|SELL;ENST00000479657.5_1_1:169673230-169677729:-|nuORF;ENST00000463108.5_1_1:169670695-169680678:-|nuORF	ENSG00000188404|ENST00000236147|SELL	ENSG00000188404|ENST00000236147|SELL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.23687744140625	2	467.224874	932.435195	-1.1255	-0.00052587	2.4854	0.0011612	1.3599	0.00063538	467.22567495114566	28.955	0.41274	28.955	28.736	29.149	0					16	9	2	0	0	0	0.027866	1	1716	1716		17.365	0	1	107880			30023	9718	20673	20713	34558	34558					-0.03372549176117445
KDAGRHRWGQ	10	Unmodified	_KDAGRHRWGQ_					0	0	0		ENSG00000121454|ENST00000263726|LHX4	ENSG00000121454|ENST00000263726|LHX4	ENSG00000121454|ENST00000263726|LHX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.9066162109375	3	404.211122	1209.61154	0.22549	9.1146E-05	1.0658	0.00043082	1.2913	0.00052197	404.21139054736096	22.495	0.99113	22.42	21.793	22.784	-0.075296					33	20	2	0	0	0	0.03519	1	819	819		43.651	15.074	1	95049			30024	3872	20674	20714	34559	34559					0.01511504777704431
KDAKKRIHNF	10	Unmodified	_KDAKKRIHNF_					0	0	0		ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.240478515625	3	419.578923	1255.71494	-0.19388	-8.1349E-05	0.40313	0.00016914	0.20925	8.7796E-05	419.5793395260418	23.676	0.33801	23.496	23.356	23.694	-0.17989					10	7	2	0	0	0	0.03519	1	963	963		12.957	0	1	76309			30025	9090	20675	20715	34560	34560					0.09730992165509633
KDALAEPCFM	10	Unmodified	_KDALAEPCFM_					0	0	0		nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25;ENST00000504959.5_1_4:186260544-186290945:+|nuORF;nc|ENSG00000109762|Q9H3E2-2|SNX25	nc|ENSG00000109762|Q9H3E2|SNX25	nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.75732421875	2	562.759378	1123.5042	-0.73896	-0.00041585	-3.119	-0.0017553	-3.858	-0.0021711	562.7574779883765	32.119	1.343	32.182	31.839	33.182	0.062885					65	34	3	0	0	0	0.62431	1	2143	2143		74.255	2.0118	1	2835400			30026	2995	20676	20716	34561	34561					-0.05260969263053994
KDALDGLLQ	9	Unmodified	_KDALDGLLQ_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7737121582031	2	486.771657	971.528761	0.029422	1.4322E-05	4.4353	0.002159	4.4647	0.0021733	486.77369037430714	27.439	0.82988	27.283	26.974	27.804	-0.15664					49	19	3	0	0	0	0.22902	1	1483	1483		85.161	2.9203	1	1367600			30027	2703	20677	20717	34562	34562					0.04185750206340799
KDALDGLLQ	9	Unmodified	_KDALDGLLQ_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	486.771657	971.528761	-0.32611	-0.00015874	4.866	0.0023686	4.5399	0.0022099	486.77387494893907	27.429	0.89268	27.186	26.911	27.804	-0.24217	-0.011195	2.8977E-05	NaN	85.161	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129800			30028	2703	20677	20717							0.04185750206340799
KDALEDKKR	9	Unmodified	_KDALEDKKR_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.8036499023438	2	551.814387	1101.61422	-0.62515	-0.00034497	3.7036	0.0020437	3.0784	0.0016987	551.8161411380789	57.649	0.24	57.472	57.396	57.636	-0.17775					8	5	2	0	0	0	0.024466	1	6296	6296		39.253	14.734	1	325500			30029	4642	20678	20718	34563	34563					0.06747915391974857
KDALEDKKR	9	Unmodified	_KDALEDKKR_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	551.814387	1101.61422	0.17485	9.6483E-05	2.2355	0.0012336	2.4104	0.0013301	551.8155305506103	57.436	0.32186	57.234	56.962	57.283	-0.20209	-0.13772	-0.00099044	NaN	47.657	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206950			30030	4642	20678	20718							0.06747915391974857
KDALHLLVF	9	Unmodified	_KDALHLLVF_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.311279296875	2	528.316035	1054.61752	-0.3807	-0.00020113	-3.6684	-0.0019381	-4.0491	-0.0021392	528.3139696077043	61.076	0.35033	60.87	60.658	61.008	-0.20599					13	8	2	0	0	0	0.024477	1	6792	6792		27.882	0	1	158040			30031	1740	20679	20719	34564	34564					0.09239210236660256
KDALLVVTK	9	Unmodified	_KDALLVVTK_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7820129394531	2	493.815867	985.617182	-0.18409	-9.0909E-05	0.42314	0.00020895	0.23904	0.00011804	493.8159419369909	66.46	0.30846	66.178	65.904	66.213	-0.28149					12	7	2	0	0	0	0.024466	1	7848	7848		24.519	4.5224	1	338770	+		30032	28476	20680	20720	34565	34565					0.12379790516797584
KDALVFLN	8	Unmodified	_KDALVFLN_					0	0	0		ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.7516784667969	2	460.26601	918.517468	-0.24503	-0.00011278	-0.030839	-1.4194E-05	-0.27587	-0.00012697	460.2659598353701	81.444	0.57303	81.444	81.178	81.751	0					19	13	2	0	0	0	0.027866	1	10188	10188		34.173	3.6689	1	88999			30033	1010	20681	20721	34566	34566					0.05494972902852169
KDALVFLN	8	Unmodified	_KDALVFLN_					0	0	0		ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	460.26601	918.517468	-0.52011	-0.00023939	-0.0018268	-8.408E-07	-0.52193	-0.00024023	460.26589726423225	81.585	0.48795	81.455	81.217	81.705	-0.13075	0.0051369	1.2606E-05	NaN	39.253	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79900			30034	1010	20681	20721							0.05494972902852169
KDANITVLD	9	Unmodified	_KDANITVLD_					0	0	0		chr10:5077977-5080746|156|30.07|0.22|7.12|+|2|AKR1C3,AKR1C3|1	chr10:5077977-5080746|156|30.07|0.22|7.12|+|2|AKR1C3,AKR1C3|1	chr10:5077977-5080746|156|30.07|0.22|7.12|+|2|AKR1C3,AKR1C3|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7721252441406	2	494.769114	987.523675	-0.24721	-0.00012231	-1.1228	-0.00055552	-1.37	-0.00067783	494.76900740286464	33.453	0.30266	33.453	33.287	33.59	0					11	8	2	0	0	0	0.024292	1	2396	2396		32.812	0	1	148740			30035	302	20682	20722	34567	34567					0.029414463436978622
KDAQLHPLI	9	Unmodified	_KDAQLHPLI_					0	0	0			REV__ENST00000515280.5_1_6:71123313-71136394:+|nuORF	REV__ENST00000515280.5_1_6:71123313-71136394:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.292236328125	2	517.803291	1033.59203	-0.83876	-0.00043431	-0.75257	-0.00038969	-1.5913	-0.000824	517.8026645549713	32.445	0.56575	32.445	32.262	32.827	0					31	12	3	0	0	0	0.024495	1	2228	2228		42.396	5.9494	1	659590	+		30036	34075	20683	20723	34568	34568					0.07657735714224145
KDAQQRAL	8	Unmodified	_KDAQQRAL_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7640380859375	2	465.261791	928.509028	-0.010164	-4.7289E-06	-1.181	-0.00054949	-1.1912	-0.00055421	465.2608139664754	21.682	0.58342	21.491	21.078	21.662	-0.19072					21	11	3	0	0	0	0.027866	1	708	708		30.504	5.0535	1	67870	+		30037	25091	20684	20724	34569	34569					0.04191418986215467
KDAQQRAL	8	Unmodified	_KDAQQRAL_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.261791	928.509028	-0.7848	-0.00036514	-0.34946	-0.00016259	-1.1343	-0.00052773	465.2614064423074	21.892	0.3827	21.892	21.63	22.012	0	0.13646	0.00059444	NaN	35.618	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32949	+		30038	25091	20684	20724							0.04191418986215467
KDAQQRAL	8	Unmodified	_KDAQQRAL_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.261791	928.509028	-0.2676	-0.0001245	-0.67956	-0.00031618	-0.94716	-0.00044068	465.2612213583778	21.892	0.33546	21.817	21.651	21.987	-0.075296	0.061761	0.00028727	NaN	35.618	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39994	+		30039	25091	20684	20724							0.04191418986215467
KDAQQRAL	8	Unmodified	_KDAQQRAL_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.261791	928.509028	-0.047397	-2.2052E-05	-1.4689	-0.00068345	-1.5163	-0.0007055	465.2608353527406	21.749	0.34141	21.821	21.637	21.978	0.071487	0.065511	-0.00044727	NaN	35.618	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27658	+		30040	25091	20684	20724							0.04191418986215467
KDARASLGTL	10	Unmodified	_KDARASLGTL_					0	0	0		nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2570190429688	2	516.29583	1030.57711	-0.72575	-0.0003747	1.3595	0.0007019	0.63374	0.00032719	516.2965482786769	25.627	0.45471	25.4	25.148	25.602	-0.22683					23	10	3	0	0	0	0.03519	1	1201	1201		16.717	0	1	619460			30041	1053	20685	20725	34570	34570					0.06304243846238933
KDARDKLAD	9	Unmodified	_KDARDKLAD_					0	0	0		ENSG00000167858|ENST00000338694|TEKT1	ENSG00000167858|ENST00000338694|TEKT1	ENSG00000167858|ENST00000338694|TEKT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2799072265625	2	516.277638	1030.54072	-0.083978	-4.3356E-05	3.5885	0.0018526	3.5045	0.0018093	516.2795014912862	55.374	2.0056	55.143	54.638	56.643	-0.23087					101	54	4	0	0	0	0.047345	2	5944	5944;5981		129.68	12.779	1	28861000			30042	7744	20686	20726	34571;34572	34571					0.026673669495039576
KDAREKLLQ	9	Unmodified	_KDAREKLLQ_					0	0	0		ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7978515625	2	550.824755	1099.63496	-0.18406	-0.00010138	-4.3926	-0.0024195	-4.5766	-0.0025209	550.8221934236734	53.765	1.2693	53.765	53.124	54.393	0					69	35	3	0	0	0	0.024484	1	5735	5735		37.812	7.3079	1	1114600			30043	2155	20687	20727	34573	34573					0.0891250577167284
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.83203125	2	540.82984	1079.64513	-1.5879	-0.00085881	4.3337	0.0023438	2.7457	0.001485	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	0.98754	4	9210	9210;9232;9257;9293		47.657	8.7492	1	90806000			30044	9294	20688	20728	34574;34575;34576;34577	34574					0.10849113496919927
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8314819335938	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.77808	3	9210	9210;9244;9269		62.107	17.991	1	94452000			30045	9294	20688	20728	34578;34579;34580	34578					0.10849113496919927
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8314819335938	2	540.82984	1079.64513	-0.45582	-0.00024652	3.2955	0.0017823	2.8397	0.0015358	540.8316944739571	75.373	1.966	75.383	75.051	77.017	0.010376					182	50	6	0	0	0	0.64538	5	9261	9162;9174;9186;9235;9261		71.877	4.7931	1	103560000			30046	9294	20688	20728	34581;34582;34583;34584;34585	34585					0.10849113496919927
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.765380859375	2	540.82984	1079.64513	-0.7371	-0.00039865	4.2432	0.0022948	3.5061	0.0018962	540.8319195574936	77.303	0.51279	77.316	77.021	77.533	0.013504					22	11	3	0	0	0	0.03519	1	9428	9428		32.812	10.853	1	208980			30047	9294	20688	20728	34586	34586					0.10849113496919927
KDAVALIREL	10	Unmodified	_KDAVALIREL_					0	0	0			REV__ENSG00000006704|ENST00000424337|GTF2IRD1	REV__ENSG00000006704|ENST00000424337|GTF2IRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2369384765625	2	564.342781	1126.67101	-0.79098	-0.00044638	0.11413	6.4407E-05	-0.67685	-0.00038198	564.34280110974	46.301	0.40652	46.098	45.93	46.336	-0.20226					16	10	2	0	0	0	0.03519	1	4417	4417		39.253	0	1	253300	+		30048	19840	20689	20729	34587	34587					0.11273962948507688
KDAVYFLN	8	Unmodified	_KDAVYFLN_					0	0	0		sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.78094482421875	2	485.255643	968.496732	-0.38973	-0.00018912	0.69929	0.00033933	0.30956	0.00015022	485.25570563094277	70.829	0.93574	70.839	70.384	71.319	0.010735					53	22	3	0	0	0	0.027866	1	8468	8468		42.396	8.8806	1	1069700			30049	37948	20690	20730	34588	34588					0.011223825231809315
KDAYMLFQDL	10	Unmodified	_KDAYMLFQDL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENST00000549378.5_1_12:62860945-62902293:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2405090332031	3	415.205763	1242.59546	0.41991	0.00017435	0.76106	0.000316	1.181	0.00049035	415.2059618812631	34.217	0.5802	34.217	33.972	34.552	0					32	14	3	0	0	0	0.03519	1	2515	2515		18.531	0	1	466830			30050	16521	20691	20731	34589	34589					-0.01613382294067378
KDCLPCMFV	9	Unmodified	_KDCLPCMFV_					0	0	0			REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3255615234375	2	528.239766	1054.46498	-1.0235	-0.00054066	4.4013	0.0023249	3.3778	0.0017843	528.241971295216	28.028	0.76823	27.859	27.569	28.337	-0.16884					23	18	2	0	0	0	0.024541	1	1633	1633		6.7355	0.81444	1	200270	+		30051	23442	20692	20732	34590	34590					-0.060073928182873715
KDCSECIYY	9	Unmodified	_KDCSECIYY_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2256469726562	2	562.225368	1122.43618	-0.22449	-0.00012621	0.64465	0.00036244	0.42016	0.00023622	562.2255189776262	56.606	0.76739	56.439	56.165	56.932	-0.1672					53	19	4	0	0	0	0.55828	1	6151	6151		55.504	0	1	2466600	+		30052	28480	20693	20733	34591	34591					-0.12013838913730979
KDCSECIYY	9	Unmodified	_KDCSECIYY_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2257690429688	2	562.225368	1122.43618	0.27073	0.00015221	0.11318	6.363E-05	0.3839	0.00021584	562.2252685581124	56.737	0.75101	56.535	56.211	56.962	-0.20208					46	19	3	0	0	0	0.70186	1	6169	6169		45.952	1.8352	1	2853100	+		30053	28480	20693	20733	34592	34592					-0.12013838913730979
KDDPKLMQEW	10	Unmodified	_KDDPKLMQEW_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;ENST00000252134.11_1_22:18273500-18274125:-|nuORF	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.530517578125	3	430.544667	1288.61217	0.59262	0.00025515	-3.5745	-0.001539	-2.9819	-0.0012838	430.54301712908915	23.539	0.41458	23.338	23.153	23.567	-0.20193					14	9	2	0	0	0	0.03519	1	932	932		19.263	2.0959	1	31569			30054	10806	20694	20734	34593	34593					-0.020588814081293094
KDDQGEEDES	10	Unmodified	_KDDQGEEDES_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.3294067382812	2	576.220379	1150.42621	-0.38561	-0.0002222	4.1482	0.0023903	3.7626	0.0021681	576.2226942078585	64.667	0.31311	64.433	64.216	64.529	-0.2345					10	7	2	0	0	0	0.03519	1	7370	7370		2.1804	0	1	82310	+		30055	23178	20695	20735	34594	34594					-0.14299032113740395
KDDQVKKIN	9	Unmodified	_KDDQVKKIN_					0	0	0		HK1|p.D23N|1|0.19|ENSG00000156515|chr10:69343830-69343830|G/A|missense_variant	HK1|p.D23N|1|0.19|ENSG00000156515|chr10:69343830-69343830|G/A|missense_variant	HK1|p.D23N|1|0.19|ENSG00000156515|chr10:69343830-69343830|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.337158203125	2	544.308938	1086.60332	-1.0019	-0.00054534	2.8935	0.0015749	1.8916	0.0010296	544.3114533201955	49.028	0.82088	48.876	48.433	49.254	-0.15277					46	22	4	0	0	0	0.023454	1	4955	4955		52.937	0	1	2930300			30056	17739	20696	20736	34595	34595					0.06348513017701407
KDDTVILET	9	Unmodified	_KDDTVILET_					0	0	0			REV__nc|ENSG00000121933|P0DMS9|TMIGD3	REV__nc|ENSG00000121933|P0DMS9|TMIGD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.271484375	2	517.274229	1032.53391	-1.0048	-0.00051974	2.6977	0.0013954	1.6929	0.00087569	517.2753426919913	85.154	1.039	85.179	84.579	85.618	0.025536					31	24	2	0	0	0	0.024495	1	10594	10594		19.997	0	1	241650	+		30057	22619	20697	20737	34596	34596					0.018940092782941065
KDDVRMEFL	9	Unmodified	_KDDVRMEFL_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.3275146484375	2	576.789524	1151.56449	-0.09405	-5.4247E-05	-4.3213	-0.0024925	-4.4154	-0.0025467	576.7868336528247	37.799	0.64881	37.62	37.09	37.739	-0.17929					29	16	2	0	0	0	0.024418	1	3037	3037		30.318	4.2543	1	218610	+		30058	20598	20698	20738	34597	34597					-0.0052253560832014045
KDEECYSESE	10	Unmodified	_KDEECYSESE_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;nc|ENSG00000074706|Q8WWN9|IPCEF1;ENSG00000074706|ENST00000367220|IPCEF1	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.9084777832031	3	406.820414	1217.43941	-0.62253	-0.00025326	4.4695	0.0018183	3.847	0.001565	406.8221366145065	55.48	0.49493	55.264	55.07	55.565	-0.21551					22	13	2	0	0	0	0.03519	1	5946	5946		9.2118	0	1	273810			30059	18817	20699	20739	34598	34598					-0.16060917326012714
KDEGKSSD	8	Unmodified	_KDEGKSSD_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2557678222656	2	433.198522	864.38249	0.081011	3.5094E-05	1.6041	0.00069488	1.6851	0.00072997	433.19940434215283	102.92	0.37225	102.79	102.67	103.05	-0.12783					10	8	2	0	0	0	0.027866	1	12821	12821		50.025	0	1	407340	+		30060	22809	20700	20740	34599	34599					-0.055125520295746355
KDEGRKEEKK	10	Unmodified	_KDEGRKEEKK_					0	0	0		MAP1A|p.H684Tfs*29|1|0.23|ENSG00000166963|chr15:43523517-43523518|-/A|frameshift_variant;MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.H684Tfs*29|1|0.23|ENSG00000166963|chr15:43523517-43523518|-/A|frameshift_variant	MAP1A|p.H684Tfs*29|1|0.23|ENSG00000166963|chr15:43523517-43523518|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2317199707031	3	416.229848	1245.66771	0.30325	0.00012622	3.8058	0.0015841	4.109	0.0017103	416.23147739627103	21.058	1.9295	20.863	20.385	22.315	-0.19577					110	39	6	0	0	0	0.96069	1	615	615		50.034	2.074	1	2798600			30061	7634	20701	20741	34600	34600					0.05470668103839671
KDEKRKLERQR	11	Unmodified	_KDEKRKLERQR_					0	0	0		SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	SLC2A4|p.E270Q|1|0.29|ENSG00000181856|chr17:7284565-7284565|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.958740234375	3	495.958462	1484.85356	0.1597	7.9203E-05	1.0802	0.00053575	1.2399	0.00061495	495.95869291912163	102.24	1.8619	102.11	101.46	103.32	-0.12931					117	44	4	0	0	0	1.0811	1	12669	12669		16.53	3.5724	1	658600			30062	37883	20702	20742	34601	34601					0.13052490343170575
KDELGIPL	8	Unmodified	_KDELGIPL_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.7394714355469	2	442.758018	883.501483	-0.50036	-0.00022154	1.171	0.00051847	0.67064	0.00029693	442.75744642409563	25.664	0.16728	25.629	25.515	25.682	-0.034395					5	3	2	0	0	0	0.027866	1	1211	1211		7.1934	0	1	21577			30063	6733	20703	20743	34602	34602					0.055072666659384595
KDELSMLIA	9	Unmodified	_KDELSMLIA_					0	0	0			REV__ENSG00000068097|ENST00000184956|HEATR6	REV__ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.26507568359375	2	510.275718	1018.53688	0.35278	0.00018001	-0.33885	-0.00017291	0.013927	7.1065E-06	510.2753952199078	81.793	1.0096	81.564	80.939	81.948	-0.2289					24	16	2	0	0	0	0.024294	1	9851	9851		45.952	20.502	1	261690	+		30064	20372	20704	20744	34603	34603					0.0283556113143959
KDEPENLSLS	10	Unmodified	_KDEPENLSLS_					0	0	0			REV__ENSG00000148358|ENST00000347136|GPR107	REV__ENSG00000148358|ENST00000347136|GPR107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8068237304688	2	566.280043	1130.54553	-0.20697	-0.0001172	0.213	0.00012062	0.0060333	3.4165E-06	566.2806582828907	33.073	0.73055	32.842	32.423	33.153	-0.23107					39	17	3	0	0	0	0.03519	1	2270	2270		42.864	0	1	489420	+		30065	24612	20705	20745	34604	34604					-0.014517936983793334
KDEPSSYICTT	11	Unmodified	_KDEPSSYICTT_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B;BCL11B|p.V274Wfs*7|1|0.32|ENSG00000127152|chr14:99176016-99176016|C/-|frameshift_variant	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.559814453125	3	415.188549	1242.54382	-0.26133	-0.0001085	4.1514	0.0017236	3.8901	0.0016151	415.18990120181763	27.022	0.43173	26.865	26.586	27.018	-0.15664					14	9	2	0	0	0	0.024742	1	1392	1392		25.892	0	1	72796			30066	4230	20706	20746	34605	34605					-0.06775170778632855
KDEPVPTPTQT	11	Unmodified	_KDEPVPTPTQT_					0	0	0			REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.1554260253906	3	404.875071	1211.60338	0.36775	0.00014889	1.488	0.00060244	1.8557	0.00075133	404.87550621308145	32.712	0.40618	32.476	32.258	32.664	-0.23666					12	9	2	0	0	0	0.024748	1	2300	2300		22.075	4.2423	1	42902	+		30067	23841	20707	20747	34606	34606					0.006044682270385238
KDEPVPTPTQT	11	Unmodified	_KDEPVPTPTQT_					0	0	0			REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.875071	1211.60338	0.52082	0.00021087	5.4307	0.0021988	5.9515	0.0024096	405.2125480347962	32.819	0.14953	32.819	32.715	32.865	0	0.17172	0.0003624	NaN	31.722	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39981	+		30068	23841	20707	20747							0.006044682270385238
KDEQNHQRR	9	Unmodified	_KDEQNHQRR_					0	0	0		ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.214599609375	3	404.206037	1209.59628	0.17707	7.1574E-05	-1.7283	-0.00069861	-1.5513	-0.00062704	404.540279999948	28.688	0.16451	28.688	28.613	28.778	0					5	3	2	0	0	0	0.024541	1	1682	1682		20.03	0	1	55207			30069	10593	20708	20748	34607	34607					-0.00013406810171545658
KDESVTLN	8	Unmodified	_KDESVTLN_					0	0	0			REV__ENSG00000170364|ENST00000358065|SETMAR	REV__ENSG00000170364|ENST00000358065|SETMAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24822998046875	2	453.232364	904.450176	-0.35005	-0.00015865	2.0541	0.00093097	1.704	0.00077231	453.23321765451595	25.331	0.6919	25.331	24.919	25.611	0					27	16	2	0	0	0	0.027866	1	1215	1215		29.15	0	1	477220	+		30070	26459	20709	20749	34608	34608					-0.005871020987569864
KDETVGRLP	9	Unmodified	_KDETVGRLP_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7679138183594	2	507.782556	1013.55056	-1.0524	-0.00053437	-0.84696	-0.00043007	-1.8993	-0.00096444	508.28490140012804	22.425	0.6188	22.499	22.172	22.791	0.073954					21	12	2	0	0	0	0.024337	1	778	778		49.536	8.1094	1	36092			30071	2391	20710	20750	34609	34609					0.04432554954905754
KDEYEKFKL	9	Unmodified	_KDEYEKFKL_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.203857421875	3	400.548406	1198.62339	0.97787	0.00039168	-2.6916	-0.0010781	-1.7138	-0.00068644	400.881049798505	25.594	0.45924	25.424	25.122	25.581	-0.17078					17	10	2	0	0	0	0.02366	1	1198	1198		63.534	13.5	1	66688			30072	9742;18611;9785	20711	20751	34610	34610					0.03202263957678042
KDEYFEEI	8	Unmodified	_KDEYFEEI_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3074951171875	2	536.745305	1071.47606	-0.30066	-0.00016138	1.495	0.00080244	1.1944	0.00064106	537.2476319130711	68.618	0.46364	68.325	68.132	68.596	-0.29267					21	11	3	0	0	0	0.027866	1	8180	8180		49.442	0	1	152080			30073	3598	20712	20752	34611	34611					-0.05682252647147834
KDEYQYSFWDL	11	Unmodified	_KDEYQYSFWDL_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.76385498046875	3	498.55763	1492.65106	-0.58992	-0.00029411	-2.7762	-0.0013841	-3.3661	-0.0016782	498.89188555051794	42.549	0.37685	42.32	42.066	42.443	-0.2295					14	9	2	0	0	0	0.024828	1	3840	3840		5.6988	0	1	77052			30074	5880	20713	20753	34612	34612					-0.07555877572758618
KDFAEQLSI	9	Unmodified	_KDFAEQLSI_					0	0	0			REV__WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	REV__WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.3145751953125	2	525.776939	1049.53933	-0.60883	-0.00032011	0.67199	0.00035332	0.063164	3.321E-05	525.7767885347811	75.528	0.88995	75.284	74.798	75.688	-0.24455					40	23	2	0	0	0	0.024397	1	9258	9258		31.53	3.6476	1	228870	+		30075	20904	20714	20754	34613	34613					0.016537328607682866
KDFDPRIFEV	10	Unmodified	_KDFDPRIFEV_					0	0	0			REV__nc|ENSG00000164318|Q63HQ2|EGFLAM	REV__nc|ENSG00000164318|Q63HQ2|EGFLAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5180358886719	3	422.555672	1264.64519	-0.28053	-0.00011854	-3.2124	-0.0013574	-3.4929	-0.001476	422.5540279057656	30.449	1.2675	30.205	29.482	30.75	-0.24415					48	18	4	0	0	0	0.03519	1	2011	2011		17.167	0	1	484240	+		30076	25737	20715	20755	34614	34614					0.023450687061995268
KDFELAIKL	9	Unmodified	_KDFELAIKL_					0	0	0			REV__ENSG00000103642|ENST00000261893|LACTB	REV__ENSG00000103642|ENST00000261893|LACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.821044921875	2	538.82115	1075.62775	-1.1179	-0.00060234	0.75971	0.00040935	-0.35818	-0.000193	538.8215500622114	64.652	1.0282	64.697	64.335	65.363	0.045502					45	27	2	0	0	0	0.48817	1	7519	7519		60.118	5.3419	1	10055000	+		30077	21401	20716	20756	34615	34615					0.0929577317122039
KDFESFME	8	Unmodified	_KDFESFME_					0	0	0			REV__ENSG00000172179|ENST00000306482|PRL	REV__ENSG00000172179|ENST00000306482|PRL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.28173828125	2	516.720775	1031.427	-0.24195	-0.00012502	-3.3002	-0.0017053	-3.5422	-0.0018303	516.7190595018616	74.941	0.43823	74.941	74.717	75.155	0					16	10	2	0	0	0	0.027866	1	9152	9152		58.782	14.665	1	160770	+		30078	26643	20717	20757	34616	34616					-0.08745864207730847
KDFESFME	8	Unmodified	_KDFESFME_					0	0	0			REV__ENSG00000172179|ENST00000306482|PRL	REV__ENSG00000172179|ENST00000306482|PRL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.720775	1031.427	-0.68893	-0.00035598	-2.8135	-0.0014538	-3.5024	-0.0018098	516.719177641308	74.959	0.43922	74.969	74.732	75.171	0.010368	0.038981	0.00028527	NaN	58.782	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128390	+		30079	26643	20717	20757							-0.08745864207730847
KDFHHHHFPD	10	Unmodified	_KDFHHHHFPD_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.7521057128906	3	439.535494	1315.58465	-0.24094	-0.0001059	1.2449	0.00054718	1.004	0.00044128	439.53632334070574	40.409	0.36684	40.184	39.965	40.332	-0.225					15	9	2	0	0	0	0.03519	1	3455	3455		25.126	21.915	1	169840			30080	2912	20718	20758	34617	34617					-0.060516038334981204
KDFHHHHFPD	10	Unmodified	_KDFHHHHFPD_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	439.535494	1315.58465	-0.78455	-0.00034484	2.056	0.00090368	1.2714	0.00055884	439.53642920743465	40.292	0.36134	40.142	39.933	40.294	-0.1497	-0.054462	0.00055577	NaN	14.086	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157180			30081	2912	20718	20758							-0.060516038334981204
KDFHHHHFPD	10	Unmodified	_KDFHHHHFPD_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	439.535494	1315.58465	-0.67468	-0.00029655	1.6541	0.00072702	0.97939	0.00043048	439.5363732106022	40.494	0.40673	40.264	40.008	40.414	-0.23021	0.067559	2.58E-05	NaN	14.086	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196350			30082	2912	20718	20758							-0.060516038334981204
KDFHMSELS	9	Unmodified	_KDFHMSELS_					0	0	0		ENSG00000174130|ENST00000508254|TLR6;ENSG00000174125|ENST00000308979|TLR1	ENSG00000174130|ENST00000508254|TLR6;ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7297973632812	2	547.252774	1092.491	-0.9676	-0.00052952	-2.3744	-0.0012994	-3.342	-0.0018289	547.2512965101155	61.924	0.975	61.746	61.329	62.304	-0.17781					75	24	4	0	0	0	0.024292	1	6894	6894		32.812	0	1	4437800			30083	8442;8443	20719	20759	34618	34618					-0.05155084050784353
KDFLQGEPAW	10	Unmodified	_KDFLQGEPAW_					0	0	0		ENST00000561018.5_1_15:41067168-41068598:-|nuORF	ENST00000561018.5_1_15:41067168-41068598:-|nuORF	ENST00000561018.5_1_15:41067168-41068598:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.7954711914062	2	595.795663	1189.57677	-1.5521	-0.00092471	1.9417	0.0011569	0.38967	0.00023216	595.7967172280273	60.898	0.80122	60.722	60.403	61.205	-0.1761					62	19	4	0	0	0	1.0909	1	6788	6788		33.922	1.1092	1	4448700			30084	16811	20720	20760	34619	34619					-0.010431758736331176
KDFQALNPM	9	Unmodified	_KDFQALNPM_					0	0	0		ENST00000553431.5_1_14:77787511-77795561:+|nuORF;nc|ENSG00000100577|O43708-3|GSTZ1;nc|ENSG00000100577|O43708|GSTZ1;ENSG00000100577|ENST00000216465|GSTZ1;ENST00000553838.5_1_14:77787511-77793925:+|nuORF	ENST00000553431.5_1_14:77787511-77795561:+|nuORF	ENST00000553431.5_1_14:77787511-77795561:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3067016601562	2	532.265684	1062.51682	0.052891	2.8152E-05	-1.5277	-0.00081314	-1.4748	-0.00078499	532.2653654660168	58.413	0.41139	58.504	58.26	58.671	0.091217					14	10	2	0	0	0	0.024319	1	6555	6555		47.657	16.128	1	172610			30085	2220	20721	20761	34620	34620					-0.011941898085069624
KDFSFRSL	8	Unmodified	_KDFSFRSL_					0	0	0			REV__ENST00000381007.8_1_5:64965561-64965729:-|nuORF	REV__ENST00000381007.8_1_5:64965561-64965729:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.28753662109375	2	500.266542	998.51853	-0.62354	-0.00031194	4.2698	0.002136	3.6463	0.0018241	500.2685234158201	48.841	0.60313	48.908	48.486	49.089	0.066795					26	16	2	0	0	0	0.027866	1	4970	4970		23.042	10.083	1	588030	+		30086	31503	20722	20762	34621	34621					0.01921187271761937
KDFSFRSL	8	Unmodified	_KDFSFRSL_					0	0	0			REV__ENST00000381007.8_1_5:64965561-64965729:-|nuORF	REV__ENST00000381007.8_1_5:64965561-64965729:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	500.266542	998.51853	-0.03262	-1.6319E-05	3.7595	0.0018807	3.7269	0.0018644	500.26820101514926	48.964	0.52092	48.964	48.585	49.106	0	0.063946	-0.00025828	NaN	16.473	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509920	+		30087	31503	20722	20762							0.01921187271761937
KDFSFRSL	8	Unmodified	_KDFSFRSL_					0	0	0			REV__ENST00000381007.8_1_5:64965561-64965729:-|nuORF	REV__ENST00000381007.8_1_5:64965561-64965729:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.266542	998.51853	-0.40146	-0.00020084	4.061	0.0020316	3.6596	0.0018308	500.26848787231916	48.982	0.60577	48.829	48.54	49.146	-0.15277	-0.071344	4.3419E-05	NaN	16.473	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456760	+		30088	31503	20722	20762							0.01921187271761937
KDFSSVTK	8	Unmodified	_KDFSSVTK_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.8632507324219	2	456.245275	910.475997	-0.73105	-0.00033354	2.0366	0.00092917	1.3055	0.00059563	456.24594785521344	38.602	0.87764	38.38	38.085	38.963	-0.22149					54	23	4	0	0	0	0.027866	1	3150	3150		9.7057	0	1	975680			30089	1082	20723	20763	34622	34622					0.017177921435290955
KDFTGTSD	8	Unmodified	_KDFTGTSD_					0	0	0		ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.2535095214844	2	435.695615	869.376677	0.20622	8.9847E-05	0.61324	0.00026718	0.81945	0.00035703	435.69553094909315	50.559	0.25944	50.279	50.108	50.367	-0.27977					10	6	2	0	0	0	0.027866	1	5122	5122		11.511	4.3177	1	68861			30090	3079	20724	20764	34623	34623					-0.06323650541241932
KDFTIAVATV	10	Unmodified	_KDFTIAVATV_					0	0	0			REV__nc|ENSG00000111731|Q86YS7|C2CD5	REV__nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.248046875	2	532.802957	1063.59136	-1.543	-0.0008221	0.3913	0.00020849	-1.1517	-0.00061362	532.8031158578282	48.581	0.53485	48.305	48.116	48.65	-0.27598					31	14	3	0	0	0	0.03519	1	4864	4864		18.262	0	1	1014300	+		30091	21943	20725	20765	34624	34624					0.06210896274501465
KDFTRKTV	8	Unmodified	_KDFTRKTV_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.26824951171875	2	497.787641	993.56073	-0.50034	-0.00024906	1.5922	0.00079259	1.0919	0.00054353	497.78752540962006	35.386	0.15572	35.174	35.077	35.233	-0.21246					5	3	2	0	0	0	0.027866	1	2665	2665		27.882	0	1	43428			30092	8481	20726	20766	34625	34625					0.06369162680141471
KDFVRLKKIP	10	Unmodified	_KDFVRLKKIP_					0	0	0		ENST00000542359.5_1_11:63776517-63933244:-|nuORF;ENST00000538595.1_1_11:63916459-63933466:-|nuORF;ENST00000545464.5_1_11:63767582-63933466:-|nuORF;MACROD1-BAD|1|fusion;MACROD1-TCN1|1|fusion;ENSG00000133315|ENST00000255681|MACROD1	ENST00000542359.5_1_11:63776517-63933244:-|nuORF	ENST00000542359.5_1_11:63776517-63933244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	3	415.267686	1242.78123	-0.17534	-7.2814E-05	3.774	0.0015672	3.5986	0.0014944	415.26934661247196	21.122	0.24543	21.122	21.048	21.293	0					5	4	2	0	0	0	0.03519	1	617	617		1.6353	0	1	9726.3			30093	4702	20727	20767	34626	34626					0.1695480800756286
KDFWYGHD	8	Unmodified	_KDFWYGHD_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.27197265625	2	534.232699	1066.45084	0.28101	0.00015012	3.7469	0.0020017	4.0279	0.0021518	534.7346983028607	55.576	0.46924	55.576	55.353	55.822	0					25	12	3	0	0	0	0.027866	1	6145	6145		44.117	18.667	1	151360	+		30094	36819	20728	20768	34627	34627					-0.07972262659041007
KDFYKCLL	8	Unmodified	_KDFYKCLL_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.260986328125	2	515.275521	1028.53649	-0.64328	-0.00033147	1.2104	0.0006237	0.56714	0.00029223	515.2767680043823	30.03	0.40808	30.039	29.839	30.247	0.0086708					16	9	2	0	0	0	0.027866	1	1867	1867		42.396	1.618	1	123410	+		30095	26058	20729	20769	34628	34628					0.02336186202251156
KDGAAMLM	8	Unmodified	_KDGAAMLM_					0	0	0			REV__ENSG00000100362|ENST00000417718|PVALB	REV__ENSG00000100362|ENST00000417718|PVALB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	418.88677978515625	2	418.703874	835.393195	-0.17022	-7.1271E-05	1.6115	0.00067475	1.4413	0.00060347	418.70424782928035	22.899	0.49542	22.838	22.616	23.111	-0.06086					15	10	2	0	0	0	0.027866	1	814	814		7.6903	0	1	29178	+		30096	21101	20730	20770	34629	34629					-0.03108564180479334
KDGANLID	8	Unmodified	_KDGANLID_					0	0	0			REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5933532714844	2	423.2218	844.429047	-0.56427	-0.00023881	2.2292	0.00094345	1.6649	0.00070464	423.2226007991942	50.579	0.53315	50.579	50.242	50.775	0					24	15	2	0	0	0	0.027866	1	5295	5295		15.642	0	1	298430	+		30097	21677	20731	20771	34630	34630					0.0006093259237331949
KDGDRPKI	8	Unmodified	_KDGDRPKI_					0	0	0		ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	ENSG00000111725|ENST00000229328|PRKAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.27227783203125	2	464.764166	927.513779	-0.36015	-0.00016739	0.96741	0.00044962	0.60725	0.00028223	464.7645421839364	20.548	1.4892	20.444	19.654	21.143	-0.10477					50	30	3	0	0	0	0.027866	1	544	544		47.657	18.508	1	221200			30098	3142	20732	20772	34631	34631					0.047123031289856954
KDGKYLPFI	9	Unmodified	_KDGKYLPFI_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;ENST00000495254.5_1_1:79119932-79128426:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8057250976562	2	540.808042	1079.60153	0.52722	0.00028512	-4.4531	-0.0024083	-3.9259	-0.0021231	540.8055389815946	59.829	1.2482	59.829	59.408	60.656	0					80	33	5	0	0	0	0.59099	1	6850	6850		53.351	3.8154	1	7931700			30099	5184	20733	20773	34632	34632					0.06491503999745873
KDGLAEEIR	9	Unmodified	_KDGLAEEIR_					0	0	0			REV__ENST00000522954.1_1_17:4859850-4860339:+|nuORF	REV__ENST00000522954.1_1_17:4859850-4860339:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.76318359375	2	515.780013	1029.54547	-0.90223	-0.00046535	-1.4022	-0.00072321	-2.3044	-0.0011886	515.778966627478	37.674	0.34953	37.674	37.486	37.836	0					14	9	2	0	0	0	0.024541	1	3111	3111		24.519	2.5593	1	197120	+		30100	21742	20734	20774	34633	34633					0.031882510922514484
KDGLRQFLVDA	11	Unmodified	_KDGLRQFLVDA_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.7504577636719	3	421.234822	1260.68264	0.18822	7.9285E-05	0.63166	0.00026608	0.81988	0.00034536	421.57047179505605	41.918	0.60287	41.688	41.394	41.997	-0.2303					31	16	3	0	0	0	0.024789	1	3736	3736		15.921	2.9632	1	179070	+		30101	22237	20735	20775	34634	34634					0.06272159971854308
KDGLRVLIL	9	Unmodified	_KDGLRVLIL_					0	0	0		nc|ENSG00000290798|Q9H1B4|NXF5	nc|ENSG00000290798|Q9H1B4|NXF5	nc|ENSG00000290798|Q9H1B4|NXF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8145751953125	2	513.837134	1025.65972	0.064879	3.3337E-05	-1.015	-0.00052156	-0.95015	-0.00048822	513.8364545467365	60.047	2.0895	60.047	59.779	61.868	0					121	55	4	0	0	0	0.024261	1	6879	6879		54.776	0	1	4489000			30102	18830	20736	20776	34635	34635					0.14791185645049154
KDGLWAVL	8	Unmodified	_KDGLWAVL_					0	0	0		nc|ENSG00000079739|P36871-3|PGM1;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1;ENSG00000154330|ENST00000396396|PGM5	nc|ENSG00000079739|P36871-3|PGM1;ENSG00000154330|ENST00000396396|PGM5	nc|ENSG00000079739|P36871-3|PGM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2816162109375	2	451.260728	900.506903	-0.90817	-0.00040982	-3.7788	-0.0017052	-4.687	-0.0021151	451.258986540819	51.55	0.42424	51.274	51.116	51.54	-0.27643					16	10	2	0	0	0	0.027866	1	5274	5274		26.796	0	1	219580			30103	1673;6404	20737	20777	34636	34636					0.05266990248424008
KDGMDLEPD	9	Unmodified	_KDGMDLEPD_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.80322265625	2	510.221139	1018.42773	0.053106	2.7096E-05	3.6953	0.0018854	3.7484	0.0019125	510.2229904212184	86.64	0.81638	86.503	86.136	86.953	-0.13734					34	18	3	0	0	0	0.024397	1	10507	10507		24.519	4.5224	1	111040	+		30104	36458	20738	20778	34637	34637					-0.08075069558708492
KDGNEKLDYM	10	Unmodified	_KDGNEKLDYM_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	404.857023	1211.54924	0.47185	0.00019103	3.775	0.0015283	4.2468	0.0017193	404.8581924069773	31.878	0.67813	31.641	31.189	31.867	-0.23666					27	16	2	0	0	0	0.03519	1	2188	2188		48.602	7.4926	1	99398	+		30105	22103	20739	20779	34638	34638					-0.048074471961854215
KDGNFLKLP	9	Unmodified	_KDGNFLKLP_					0	0	0		ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.748046875	2	516.297842	1030.58113	0.4609	0.00023796	-1.2293	-0.00063466	-0.76835	-0.0003967	516.2967690549264	63.542	0.41351	63.284	63.081	63.495	-0.25824					15	10	2	0	0	0	0.024374	1	7193	7193		40.778	14.085	1	408690			30106	9274	20740	20780	34639	34639					0.06706333339934645
KDGSELRR	8	Unmodified	_KDGSELRR_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2872619628906	2	480.764697	959.514842	0.61246	0.00029445	2.3985	0.0011531	3.0109	0.0014476	480.7657439102277	50.129	0.41617	49.949	49.717	50.133	-0.18071					17	10	2	0	0	0	0.027866	1	5035	5035		32.812	2.4947	1	144580	+		30107	27074	20741	20781	34640	34640					0.03346517497891455
KDGVWPKT	8	Unmodified	_KDGVWPKT_					0	0	0		EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant	EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant	EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.7950134277344	2	465.75581	929.497067	-0.038027	-1.7711E-05	1.2905	0.00060104	1.2524	0.00058332	465.7557997601254	33.715	0.75834	33.484	32.997	33.755	-0.23107					34	18	3	0	0	0	0.027866	1	2454	2454		11.511	0	1	378910			30108	17617	20742	20782	34641	34641					0.029498022430288984
KDGWKKSLL	9	Unmodified	_KDGWKKSLL_					0	0	0		ENST00000373647.8_1_9:125860077-125860997:+|nuORF	ENST00000373647.8_1_9:125860077-125860997:+|nuORF	ENST00000373647.8_1_9:125860077-125860997:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7538452148438	2	537.818941	1073.62333	-0.54543	-0.00029335	-3.4664	-0.0018643	-4.0118	-0.0021576	537.8169723684767	25.52	0.33582	25.349	25.163	25.499	-0.17078					13	7	2	0	0	0	0.024487	1	1215	1215		24.203	0	1	179610			30109	13082	20743	20783	34642	34642					0.08946308748318188
KDHIIYVKM	9	Unmodified	_KDHIIYVKM_					0	0	0		ENST00000396516.6_1_16:11859475-11861299:-|nuORF	ENST00000396516.6_1_16:11859475-11861299:-|nuORF	ENST00000396516.6_1_16:11859475-11861299:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.7949829101562	2	573.820627	1145.6267	0.30944	0.00017756	-1.4468	-0.00083022	-1.1374	-0.00065266	574.3198689665262	69.064	0.11148	68.771	68.714	68.825	-0.29267					4	2	2	0	0	0	0.024477	1	8271	8271		20.947	2.6848	1	33587			30110	13558	20744	20784	34643	34643					0.05971235530660124
KDHIKEIQ	8	Unmodified	_KDHIKEIQ_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3236999511719	2	505.785099	1009.55564	-1.5329	-0.00077533	1.2216	0.00061786	-0.31133	-0.00015747	505.7856481280337	38.453	1.0869	38.481	38.23	39.317	0.027279					69	29	4	0	0	0	0.027866	1	3293	3293		35.618	6.4687	1	2297500			30111	10129	20745	20785	34644	34644					0.05124858817509903
KDHKPWCPES	10	Unmodified	_KDHKPWCPES_					0	0	0			REV__ENST00000254868.8_2_17:6982117-6983442:-|nuORF	REV__ENST00000254868.8_2_17:6982117-6983442:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.5391540527344	3	409.525607	1225.55499	-0.087974	-3.6027E-05	3.2351	0.0013249	3.1471	0.0012888	409.8612157537545	30.727	0.12842	30.577	30.471	30.599	-0.14952					4	2	2	0	0	0	0.03519	1	1957	1957		41.08	20.048	1	22964	+		30112	29534	20746	20786	34645	34645					-0.04876303893865952
KDHQLLRA	8	Unmodified	_KDHQLLRA_					0	0	0		ENSG00000074935|ENST00000368662|TUBE1;ENST00000605457.5_1_6:112392617-112397333:-|nuORF	ENSG00000074935|ENST00000368662|TUBE1	ENSG00000074935|ENST00000368662|TUBE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.3185119628906	2	490.785433	979.556313	-1.1432	-0.00056108	-2.8608	-0.001404	-4.004	-0.0019651	490.78428171988844	29.722	0.25156	29.477	29.316	29.567	-0.24523					8	5	2	0	0	0	0.027866	1	1828	1828		51.335	5.3835	1	44754			30113	1539	20747	20787	34646	34646					0.06571698257232583
KDHRLLKMV	9	Unmodified	_KDHRLLKMV_					0	0	0			REV__ENSG00000000938|ENST00000374005|FGR	REV__ENSG00000000938|ENST00000374005|FGR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.3455810546875	2	570.339518	1138.66448	-1.7033	-0.00097146	-1.9257	-0.0010983	-3.629	-0.0020697	570.3382971280131	36.18	0.77995	36.18	35.728	36.508	0					35	21	2	0	0	0	0.024447	1	2773	2773		32.812	0	1	263090	+		30114	19753	20748	20788	34647	34647					0.10069746516137457
KDHSCKDNI	9	Unmodified	_KDHSCKDNI_					0	0	0		ENSG00000096093|ENST00000371068|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2748413085938	2	530.248023	1058.48149	-0.9355	-0.00049605	-4.2163	-0.0022357	-5.1518	-0.0027317	530.2450010726575	47.576	0.46535	47.576	47.252	47.717	0					16	13	2	0	0	0	0.024418	1	4731	4731		37.812	0	1	163540			30115	2048	20749	20789	34648	34648					-0.04540852336322132
KDIACSEALL	10	Unmodified	_KDIACSEALL_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7761840820312	2	531.778625	1061.5427	-0.90058	-0.00047891	-4.2356	-0.0022524	-5.1362	-0.0027313	531.777288887594	82.858	0.98608	82.858	82.237	83.223	0					96	22	7	0	0	0	0.14896	1	10346	10346		127.46	11.968	1	3301700			30116	10172	20750	20790	34649	34649					0.014386596431222642
KDIEANIKI	9	Unmodified	_KDIEANIKI_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3079833984375	2	522.308406	1042.60226	-0.67296	-0.00035149	-1.9133	-0.00099935	-2.5863	-0.0013508	522.3071687495956	32.324	0.86607	32.336	32.144	33.01	0.011799					55	22	4	0	0	0	0.19099	1	2230	2230		90.37	13.052	1	2360400	+		30117	37281	20751	20791	34650	34650					0.0826629864880033
KDIELLKR	8	Unmodified	_KDIELLKR_					0	0	0		ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7560119628906	2	507.818941	1013.62333	-0.17136	-8.7021E-05	2.7578	0.0014004	2.5864	0.0013134	507.81974961971883	28.895	0.50266	28.976	28.784	29.287	0.080811					19	12	2	0	0	0	0.027866	1	1670	1670		31.955	0	1	200180			30118	7905	20752	20792	34651	34651					0.1170630874833023
KDIENIIIN	9	Unmodified	_KDIENIIIN_					0	0	0		nc|ENSG00000183166|Q9BXU9-1|CALN1;ENSG00000183166|ENST00000395275|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2891235351562	2	536.305864	1070.59717	-0.71003	-0.0003808	0.87372	0.00046858	0.16369	8.7787E-05	536.3061296213324	82.527	1.1516	82.527	82.072	83.223	0					51	26	3	0	0	0	0.024484	1	10254	10254		30.318	0	1	460210			30119	9204	20753	20793	34652	34652					0.06469994786220923
KDIENIIIN	9	Unmodified	_KDIENIIIN_					0	0	0		nc|ENSG00000183166|Q9BXU9-1|CALN1;ENSG00000183166|ENST00000395275|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.305864	1070.59717	0.28147	0.00015096	1.0568	0.00056679	1.3383	0.00071775	536.305576026871	82.602	0.95424	82.382	82.043	82.997	-0.22015	-0.099417	0.00061883	NaN	41.427	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126020			30120	9204	20753	20793							0.06469994786220923
KDIENIIIN	9	Unmodified	_KDIENIIIN_					0	0	0		nc|ENSG00000183166|Q9BXU9-1|CALN1;ENSG00000183166|ENST00000395275|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.305864	1070.59717	-0.18566	-9.9571E-05	0.50141	0.00026891	0.31575	0.00016934	536.3059364075164	82.598	0.73785	82.417	81.941	82.679	-0.18079	-0.064283	2.3064E-05	NaN	41.427	27	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119510			30121	9204	20753	20793							0.06469994786220923
KDIENIIIN	9	Unmodified	_KDIENIIIN_					0	0	0		nc|ENSG00000183166|Q9BXU9-1|CALN1;ENSG00000183166|ENST00000395275|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.305864	1070.59717	-1.1417	-0.00061228	1.3287	0.00071258	0.187	0.00010029	536.3064873905204	82.572	0.56423	82.432	82.173	82.737	-0.14014	-0.050064	0.0009104	NaN	41.427	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92347			30122	9204	20753	20793							0.06469994786220923
KDIENIIL	8	Unmodified	_KDIENIIL_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2849426269531	2	479.2844	956.554247	0.35757	0.00017138	0.15027	7.2023E-05	0.50784	0.0002434	479.2842856885942	90.087	1.994	90.07	88.912	90.906	-0.016708					96	47	4	0	0	0	0.71063	1	11346	11346		66.429	0	1	1691200	+		30123	20563	20754	20794	34653	34653					0.07423224728779587
KDIENQYETQ	10	Unmodified	_KDIENQYETQ_					0	0	0		CON__P35527;ENSG00000171403|ENST00000246662|KRT9;chr17:41568633-41569426|468|18.78|0.39|5.61|-|0|KRT9,KRT9|1	CON__P35527	CON__P35527	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.2582092285156	3	423.198213	1266.57281	-0.22438	-9.4959E-05	2.4058	0.0010181	2.1814	0.00092316	423.1985375181081	27.226	0.33491	26.984	26.828	27.163	-0.24217					11	7	2	0	0	0	0.03519	1	1502	1502		42.338	10.704	1	69818		+	30124	530	20755	20795	34654	34654					-0.04981310157995722
KDIFYFSVEDN	11	Unmodified	_KDIFYFSVEDN_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.28375244140625	3	459.550475	1375.6296	-0.38092	-0.00017505	-1.9468	-0.00089468	-2.3278	-0.0010697	459.8838177602767	65.537	0.61737	65.286	65.027	65.644	-0.25112					28	14	3	0	0	0	0.024746	1	7511	7511		29.245	11.412	1	157450			30125	9198	20756	20796	34655	34655					-0.0431926260146156
KDIGKRLE	8	Unmodified	_KDIGKRLE_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.78692626953125	2	479.787641	957.56073	-0.82353	-0.00039512	0.54659	0.00026225	-0.27694	-0.00013287	479.7877732795088	29.631	0.91039	29.631	29.186	30.096	0					36	22	2	0	0	0	0.64735	1	1838	1838		71.877	0	1	661590			30126	5428	20757	20797	34656	34656					0.08025162680144149
KDIGKRLE	8	Unmodified	_KDIGKRLE_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.787641	957.56073	-0.35491	-0.00017028	0.14522	6.9677E-05	-0.20969	-0.00010061	479.7875872284195	29.59	0.83293	29.593	29.204	30.036	0.0031376	0.032159	-0.00023634	NaN	71.877	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	741660			30127	5428	20757	20797							0.08025162680144149
KDIGKRLE	8	Unmodified	_KDIGKRLE_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.787641	957.56073	-0.62212	-0.00029849	0.41635	0.00019976	-0.20577	-9.8725E-05	479.7877666520914	29.381	0.87509	29.459	29.091	29.966	0.078346	-0.10201	2.3822E-05	NaN	71.877	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654980			30128	5428	20757	20797							0.08025162680144149
KDIGRLKL	8	Unmodified	_KDIGRLKL_					0	0	0		ENSG00000198759|ENST00000361306|EGFL6;nc|ENSG00000198759|Q8IUX8-2|EGFL6	ENSG00000198759|ENST00000361306|EGFL6	ENSG00000198759|ENST00000361306|EGFL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.81024169921875	2	471.808377	941.6022	0.89455	0.00042206	-1.07	-0.00050483	-0.17543	-8.2771E-05	471.8076820126988	19.53	0.84319	19.33	18.662	19.505	-0.2001					33	16	4	0	0	0	1.043	1	426	426		30.504	0	1	247660			30129	10192	20758	20798	34657	34657					0.1290634343945385
KDIGSVFIW	9	Unmodified	_KDIGSVFIW_					0	0	0		ENST00000469560.1_1_7:102952090-102952270:+|nuORF	ENST00000469560.1_1_7:102952090-102952270:+|nuORF	ENST00000469560.1_1_7:102952090-102952270:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3162841796875	2	532.792392	1063.57023	-1.0151	-0.00054082	-1.355	-0.00072191	-2.37	-0.0012627	532.7917645185607	22.474	0.79174	22.288	21.715	22.507	-0.18539					28	16	2	0	0	0	0.024541	1	737	737		19.104	0	1	74783			30130	14909	20759	20799	34658	34658					0.04098930965665204
KDIHPDLI	8	Unmodified	_KDIHPDLI_					0	0	0		ENST00000354772.8_3_14:23815551-23815695:-|nuORF	ENST00000354772.8_3_14:23815551-23815695:-|nuORF	ENST00000354772.8_3_14:23815551-23815695:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.79266357421875	2	475.768917	949.523281	-0.25088	-0.00011936	-0.10437	-4.9656E-05	-0.35525	-0.00016902	475.7686230487565	56.388	0.51557	56.485	56.136	56.652	0.097897					25	13	3	0	0	0	0.027866	1	6164	6164		57.811	0	1	270980			30131	12633	20760	20800	34659	34659					0.04650071414528156
KDIIEPAMYQ	10	Unmodified	_KDIIEPAMYQ_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	604.2853393554688	2	604.305007	1206.59546	-1.122	-0.00067804	0.28912	0.00017472	-0.8329	-0.00050332	604.3051834796297	30.387	0.2428	30.209	30.04	30.283	-0.17818					8	5	2	0	0	0	0.03519	1	1930	1930		30.318	8.632	1	52065	+		30132	28304	20761	20801	34660	34660					0.00042617705935299455
KDIIIKEEV	9	Unmodified	_KDIIIKEEV_					0	0	0			REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7952880859375	2	543.823889	1085.63323	-0.80069	-0.00043543	-2.2683	-0.0012335	-3.069	-0.001669	543.8225820866448	55.144	0.45047	54.994	54.782	55.232	-0.15036					22	12	3	0	0	0	0.023473	1	6053	6053		75.043	8.614	1	381930	+		30133	26230	20762	20802	34661	34661					0.09383451963026346
KDIITKVA	8	Unmodified	_KDIITKVA_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.25103759765625	2	444.28166	886.548768	-0.35329	-0.00015696	-0.060802	-2.7013E-05	-0.41409	-0.00018397	444.28150289199107	29.649	0.52931	29.652	29.427	29.956	0.0031357					20	12	2	0	0	0	0.027866	1	1795	1795		17.365	0	1	192890			30134	456;1424	20763	20803	34662	34662					0.10095545936951567
KDIIYAPYI	9	Unmodified	_KDIIYAPYI_					0	0	0			REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|7	REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|0|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3092651367188	2	548.307875	1094.6012	-0.63397	-0.00034761	0.27737	0.00015208	-0.3566	-0.00019553	548.30787158307	101.57	1.6212	101.58	101.09	102.71	0.0090332					100	37	4	0	0	0	0.25032	1	12998	12998		82.305	0	1	2768400	+		30135	19443	20764	20804	34663	34663					0.05768084279884533
KDIKQAKS	8	Unmodified	_KDIKQAKS_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2247619628906	2	459.274367	916.53418	-1.0133	-0.0004654	-1.1524	-0.00052926	-2.1657	-0.00099467	459.27363412311524	26.072	0.30602	25.908	25.674	25.98	-0.16331					15	8	2	0	0	0	0.027866	1	1276	1276		18.262	0	1	2752200	+		30136	22399	20765	20805	34664	34664					0.07257473788797597
KDIKTIVT	8	Unmodified	_KDIKTIVT_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2403259277344	2	459.286943	916.559333	1.0545	0.0004843	-1.216	-0.00055848	-0.16151	-7.418E-05	459.28622560207793	54.172	0.55146	54.27	54.006	54.558	0.098015					28	15	3	0	0	0	0.027866	1	5846	5846		26.693	4.733	1	332760	+		30137	22489	20766	20806	34665	34665					0.09771528591375045
KDILPRNI	8	Unmodified	_KDILPRNI_					0	0	0		ALG6|p.H295N|1|0.27|ENSG00000088035|chr1:63414127-63414127|C/A|missense_variant	ALG6|p.H295N|1|0.27|ENSG00000088035|chr1:63414127-63414127|C/A|missense_variant	ALG6|p.H295N|1|0.27|ENSG00000088035|chr1:63414127-63414127|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7677917480469	2	484.798009	967.581465	0.01475	7.1506E-06	-0.36125	-0.00017513	-0.3465	-0.00016798	484.79773528946595	46.62	0.73344	46.62	46.343	47.076	0					37	19	3	0	0	0	0.027866	1	4661	4661		53.351	24.202	1	751170			30138	63	20767	20807	34666	34666					0.09637753059791976
KDILQRAVE	9	Unmodified	_KDILQRAVE_					0	0	0			REV__FUBP3|p.E423K|1|0.32|ENSG00000107164|chr9:130630777-130630777|G/A|missense_variant	REV__FUBP3|p.E423K|1|0.32|ENSG00000107164|chr9:130630777-130630777|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.293212890625	2	536.31148	1070.60841	-0.82995	-0.00044511	-0.046482	-2.4929E-05	-0.87643	-0.00047004	536.3113005362528	44.904	0.89692	44.948	44.382	45.279	0.043877					51	25	3	0	0	0	0.024405	1	4205	4205		27.882	0	1	2218400	+		30139	36051	20768	20808	34667	34667					0.07592816880310238
KDIMTRIAD	9	Unmodified	_KDIMTRIAD_					0	0	0		ENST00000496105.1_1_3:113169108-113212968:-|nuORF;ENSG00000163611|ENST00000295872|SPICE1	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2984008789062	2	531.784241	1061.55393	-0.82211	-0.00043718	-3.7215	-0.001979	-4.5436	-0.0024162	531.7830578489015	52.109	0.1993	52.201	52.04	52.24	0.091938					6	4	2	0	0	0	0.024344	1	5485	5485		45.972	8.8131	1	30931			30140	7114	20769	20809	34668	34668					0.025614817372343168
KDINDNRPT	9	Unmodified	_KDINDNRPT_					0	0	0		ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.803466796875	2	536.772719	1071.53089	-0.97307	-0.00052232	2.638	0.001416	1.665	0.00089371	536.7734897878993	51.462	0.39037	51.315	51.12	51.511	-0.14735					14	10	2	0	0	0	0.024405	1	5446	5446		27.882	0	1	129430			30141	1651	20770	20810	34669	34669					-0.002018210558617284
KDIPFTRA	8	Unmodified	_KDIPFTRA_					0	0	0			REV__ENSG00000237388|ENST00000446524|OR4A47	REV__ENSG00000237388|ENST00000446524|OR4A47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.24578857421875	2	474.269084	946.523616	-0.218	-0.00010339	-1.0126	-0.00048026	-1.2306	-0.00058365	474.2696258664328	45.807	0.37617	45.656	45.48	45.856	-0.15157					14	10	2	0	0	0	0.027866	1	4460	4460		27.882	1.1893	1	139640	+		30142	28941	20771	20811	34670	34670					0.04821491134362077
KDIPRSSFI	9	Unmodified	_KDIPRSSFI_					0	0	0			REV__nc|ENSG00000116005|Q9UHG3-2|PCYOX1	REV__nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.7977905273438	2	531.800749	1061.58694	-0.20116	-0.00010698	-3.2786	-0.0017436	-3.4798	-0.0018506	531.7988355673097	99.002	1.2359	98.834	98.461	99.697	-0.16863					45	25	3	0	0	0	0.6504	1	12253	12253		49.442	1.5259	1	199030	+		30143	22250	20772	20812	34671	34671					0.058614318515992636
KDIRGDKIT	9	Unmodified	_KDIRGDKIT_					0	0	0		nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000135766|ENST00000366641|EGLN1	nc|ENSG00000135766|Q9GZT9-3|EGLN1	nc|ENSG00000135766|Q9GZT9-3|EGLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2950439453125	2	523.303655	1044.59276	-1.1116	-0.00058171	0.088977	4.6562E-05	-1.0226	-0.00053514	523.3033244887562	44.737	0.5112	44.638	44.317	44.828	-0.099449					22	12	3	0	0	0	0.024539	1	4160	4160		27.882	1.1893	1	258140			30144	4930	20773	20813	34672	34672					0.07224530363282611
KDITEFSLI	9	Unmodified	_KDITEFSLI_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.271728515625	2	533.294965	1064.57538	-0.028123	-1.4998E-05	-0.6307	-0.00033635	-0.65882	-0.00035135	533.2945987612395	78.221	1.0274	77.99	77.709	78.736	-0.23141					52	23	3	0	0	0	0.024374	1	9342	9342		40.778	11.629	1	1064200	+		30145	36725	20774	20814	34673	34673					0.04567190037619184
KDITFQYF	8	Unmodified	_KDITFQYF_					0	0	0		nc|ENSG00000159200|P53805-3|RCAN1;nc|ENSG00000159200|P53805-2|RCAN1;ENSG00000159200|ENST00000313806|RCAN1	nc|ENSG00000159200|P53805-3|RCAN1	nc|ENSG00000159200|P53805-3|RCAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3067626953125	2	531.26875	1060.52295	1.147	0.00060935	-3.021	-0.001605	-1.8741	-0.00099562	531.2649345120077	59.054	0.28818	58.867	58.648	58.936	-0.18705					10	7	2	0	0	0	0.027866	1	6665	6665		58.782	23.63	1	219260			30146	6727	20775	20815	34674	34674					-0.004893483053592718
KDITFQYF	8	Unmodified	_KDITFQYF_					0	0	0		nc|ENSG00000159200|P53805-3|RCAN1;nc|ENSG00000159200|P53805-2|RCAN1;ENSG00000159200|ENST00000313806|RCAN1	nc|ENSG00000159200|P53805-3|RCAN1	nc|ENSG00000159200|P53805-3|RCAN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.26875	1060.52295	0.11858	6.2995E-05	-9.1445	-0.0048582	-9.0259	-0.0047952	531.7641310521309	59.03	0.17807	59.116	59.063	59.241	0.085682	0.12429	-0.0042108	NaN	58.782	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46227			30147	6727	20775	20815							-0.004893483053592718
KDIYSAPAW	9	Unmodified	_KDIYSAPAW_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.257080078125	2	525.766374	1049.5182	-0.65735	-0.00034561	-4.3207	-0.0022717	-4.9781	-0.0026173	525.763951605696	39.434	0.98373	39.269	38.934	39.918	-0.16458					24	19	2	0	0	0	0.024457	1	3368	3368		21.96	5.4867	1	860880	+		30148	21702	20776	20816	34675	34675					-0.004582324481134492
KDKARVTLN	9	Unmodified	_KDKARVTLN_					0	0	0			REV__FAT1-MTNR1A|1|fusion;REV__ENSG00000083857|ENST00000441802|FAT1;REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2958984375	2	522.811648	1043.60874	0.25892	0.00013537	-2.3057	-0.0012055	-2.0468	-0.0010701	522.8102655014724	33.411	0.30398	33.467	33.35	33.654	0.056568					10	7	2	0	0	0	0.024447	1	2378	2378		32.812	3.6629	1	58569	+		30149	25874;20725;36021	20777	20817	34676	34676					0.08868236600187629
KDKAYVQAR	9	Unmodified	_KDKAYVQAR_					0	0	0		ENSG00000180509|ENST00000399286|KCNE1	ENSG00000180509|ENST00000399286|KCNE1	ENSG00000180509|ENST00000399286|KCNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.8160400390625	2	539.803823	1077.59309	-0.62733	-0.00033863	0.71792	0.00038754	0.090592	4.8902E-05	539.8046837894233	45.746	0.86433	45.746	45.478	46.343	0					53	24	4	0	0	0	0.024261	1	4432	4432		54.776	5.3348	1	408320			30150	8983	20778	20818	34677	34677					0.057399500831252226
KDKDFAIDI	9	Unmodified	_KDKDFAIDI_					0	0	0		ENST00000610026.1_1_10:71965926-71969460:-|nuORF;ENSG00000180817|ENST00000373232|PPA1	ENST00000610026.1_1_10:71965926-71969460:-|nuORF	ENST00000610026.1_1_10:71965926-71969460:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.3056030273438	2	532.784764	1063.55498	1.0198	0.00054335	-4.0166	-0.00214	-2.9967	-0.0015966	532.7822929902006	63.286	0.50138	63.34	63.054	63.555	0.054104					21	13	2	0	0	0	0.024319	1	7296	7296		47.657	17.154	1	202310			30151	9000	20779	20819	34678	34678					0.025740193777892273
KDKEDIYLSI	10	Unmodified	_KDKEDIYLSI_					0	0	0		nc|ENSG00000132122|Q9NWH7-2|SPATA6;ENSG00000132122|ENST00000371847|SPATA6;ENST00000463938.5_1_1:48878802-48937680:-|nuORF;SPATA6-FAF1|1|fusion	nc|ENSG00000132122|Q9NWH7-2|SPATA6	nc|ENSG00000132122|Q9NWH7-2|SPATA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.5391540527344	3	408.555449	1222.64452	-0.14236	-5.8161E-05	4.1672	0.0017025	4.0248	0.0016444	408.557096060678	30.611	0.58876	30.462	29.967	30.556	-0.14952					21	13	2	0	0	0	0.03519	1	1957	1957		26.063	3.5018	1	46637			30152	4573	20780	20820	34679	34679					0.042102292665276764
KDKEFCVLP	9	Carbamidomethyl (C)	_KDKEFC(Carbamidomethyl (C))VLP_	KDKEFC(1)VLP		KDKEFC(110)VLP		0	1	0			REV__ENSG00000198670|ENST00000316300|LPA;REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000198670|ENST00000316300|LPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3132934570312	2	568.294442	1134.57433	0.0020735	1.1783E-06	-2.106	-0.0011968	-2.1039	-0.0011956	568.294094803013	61.569	0.32849	61.342	61.047	61.375	-0.22663					14	8	2	0	0	0	0.022083	1	7082	7082		111.65	31.936	1	186760	+		30153	28446;22631	20781	20821	34680	34680	296				0.012426523970589187
KDKFIRRW	8	Unmodified	_KDKFIRRW_					0	0	0		nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENSG00000134452|ENST00000362091|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.8190307617188	2	574.838	1147.66145	-0.99401	-0.00057139	1.0127	0.00058214	0.018688	1.0743E-05	574.8388182771192	68.314	0.38029	68.314	68.14	68.52	0					11	9	2	0	0	0	0.027866	1	8167	8167		26.796	0	1	204740			30154	4797	20782	20822	34681	34681					0.09352239453664879
KDKGEKEE	8	Unmodified	_KDKGEKEE_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000285975|A6NNJ1|FAM90A9;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000285975|A6NKC0|FAM90A7;nc|ENSG00000285937|A6NJQ4|FAM90A8;ENSG00000229924|ENST00000512047|FAM90A26;ENSG00000171847|ENST00000538603|FAM90A1;nc|ENSG00000205879|Q658T7|FAM90A2P;nc|ENSG00000205879|Q658T7-2|FAM90A2P	nc|ENSG00000233295|A6NIJ5|FAM90A20;ENSG00000229924|ENST00000512047|FAM90A26	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2771301269531	2	481.743096	961.47164	-1.1103	-0.00053487	4.366	0.0021033	3.2557	0.0015684	481.74466583779684	24.755	0.75069	24.707	24.398	25.148	-0.047148					24	16	2	0	0	0	0.027866	1	1088	1088		45.952	0	1	54293			30155	18749;8203	20783	20823	34682	34682					-0.010637170700533716
KDKHTKYQ	8	Unmodified	_KDKHTKYQ_					0	0	0			REV__ENST00000441308.1_1_20:10367413-10367935:+|nuORF	REV__ENST00000441308.1_1_20:10367413-10367935:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.7593994140625	2	524.282723	1046.55089	-0.050547	-2.6501E-05	2.5361	0.0013296	2.4855	0.0013031	524.2841381261919	47.107	0.92271	46.954	46.342	47.265	-0.15301					49	24	3	0	0	0	0.027866	1	4600	4600		34.173	6.2903	1	563640	+		30156	28411	20784	20824	34683	34683					0.02947974674748366
KDKIKDVRA	9	Unmodified	_KDKIKDVRA_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3055419921875	2	536.827298	1071.64004	-1.1033	-0.00059226	2.4991	0.0013416	1.3959	0.00074935	536.8283111108118	48.137	0.3707	47.984	47.924	48.295	-0.153					14	10	2	0	0	0	0.024337	1	4897	4897		58.23	1.7961	1	405870	+		30157	22714	20785	20825	34684	34684					0.10708809634274985
KDKINFIAGY	10	Unmodified	_KDKINFIAGY_					0	0	0			REV__ENSG00000156689|ENST00000287275|GLYATL2	REV__ENSG00000156689|ENST00000287275|GLYATL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.2666015625	2	584.821681	1167.62881	-0.9343	-0.0005464	0.57362	0.00033547	-0.36067	-0.00021093	584.8218400083474	57.4	0.50925	57.166	56.914	57.424	-0.23363					32	13	3	0	0	0	0.03519	1	6223	6223		29.17	0	1	434520	+		30158	25088	20786	20826	34685	34685					0.05169987540148213
KDKIYHSL	8	Unmodified	_KDKIYHSL_					0	0	0			REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.79547119140625	2	502.282192	1002.54983	0.48602	0.00024412	2.7959	0.0014043	3.2819	0.0016484	502.28525472175164	52.856	0.16021	52.598	52.523	52.683	-0.25838					5	3	2	0	0	0	0.027866	1	5494	5494		21.96	0	1	31275	+		30159	28093	20787	20827	34686	34686					0.048657603058586574
KDKKEVEL	8	Unmodified	_KDKKEVEL_					0	0	0			REV__ENSG00000151849|ENST00000381884|CENPJ	REV__ENSG00000151849|ENST00000381884|CENPJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.78460693359375	2	494.787307	987.560061	-0.40307	-0.00019943	-2.1959	-0.0010865	-2.5989	-0.0012859	494.78541855198455	32.696	0.90815	32.459	32.042	32.95	-0.23666					61	21	5	0	0	0	0.68164	1	2284	2284		68.787	0	1	2868900	+		30160	24801	20788	20828	34687	34687					0.06578323240421469
KDKKSVPL	8	Unmodified	_KDKKSVPL_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	457.78711	913.559667	-0.30853	-0.00014124	-0.6364	-0.00029133	-0.94492	-0.00043257	457.786196865355	26.613	0.45262	26.59	26.324	26.776	-0.023088					12	10	2	0	0	0	0.027866	1	1367	1367		38.806	8.3025	1	55744	+		30161	22497	20789	20829	34688	34688					0.09942948311231703
KDKLIDCYTF	10	Unmodified	_KDKLIDCYTF_					0	0	0		nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG855|P10266|ERVK-10_pol	nc|ENSG851|Q9QC07|ERVK-18_pol	nc|ENSG851|Q9QC07|ERVK-18_pol	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.87896728515625	3	415.877647	1244.61111	-0.5483	-0.00022803	3.3673	0.0014004	2.819	0.0011724	415.8792344754713	30.792	0.70627	30.55	30.247	30.954	-0.24194					60	16	5	0	0	0	1.0177	1	1993	1993		43.651	3.7776	1	1210500			30162	18849	20790	20830	34689	34689					-0.0014109577705312404
KDKLKIFEV	9	Unmodified	_KDKLKIFEV_					0	0	0		PCDHGA3|p.E111K|1|0.29|ENSG00000254245|chr5:141344364-141344364|G/A|missense_variant	PCDHGA3|p.E111K|1|0.29|ENSG00000254245|chr5:141344364-141344364|G/A|missense_variant	PCDHGA3|p.E111K|1|0.29|ENSG00000254245|chr5:141344364-141344364|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.33935546875	2	560.342249	1118.66995	-0.38796	-0.00021739	-3.4302	-0.0019221	-3.8182	-0.0021395	560.3401809188904	101.1	1.8443	101.11	100.79	102.63	0.0090256					135	42	6	0	0	0	0.91321	1	12988	12988		31.53	1.0262	1	14349000			30163	18951	20791	20831	34690	34690					0.11535748579581195
KDKLRSEKM	9	Unmodified	_KDKLRSEKM_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.23046875	2	567.818615	1133.62268	-0.69649	-0.00039548	-2.4749	-0.0014053	-3.1714	-0.0018008	567.8170989012109	38.238	0.57291	38.016	37.761	38.334	-0.22149					35	16	3	0	0	0	0.024477	1	3165	3165		27.882	10.517	1	729540	+		30164	19995	20792	20832	34691	34691					0.06121146036957725
KDKLTFLS	8	Unmodified	_KDKLTFLS_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2667541503906	2	476.279118	950.543683	0.16122	7.6787E-05	2.7716	0.0013201	2.9329	0.0013969	476.28081714255165	31.54	0.18414	31.299	31.185	31.369	-0.24109					6	4	2	0	0	0	0.027866	1	2106	2106		49.442	5.3247	1	125540			30165	651	20793	20833	34692	34692					0.06643242074335376
KDKLVRPPS	9	Unmodified	_KDKLVRPPS_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.8323974609375	2	520.316566	1038.61858	-0.59172	-0.00030788	-0.052911	-2.753E-05	-0.64463	-0.00033541	520.3162893963208	20.836	0.57195	20.732	20.522	21.094	-0.10477					23	11	3	0	0	0	0.024261	1	595	595		45.972	0	1	128680	+		30166	26149	20794	20834	34693	34693					0.10081424605550637
KDKMAEAYS	9	Unmodified	_KDKMAEAYS_					0	0	0		ENST00000483825.5_1_1:167400920-167403349:-|nuORF;ENST00000470379.1_1_1:167400920-167408655:-|nuORF;ENST00000476733.5_1_1:167400920-167408655:-|nuORF;nc|ENSG00000198821|P20963-3|CD247;ENSG00000198821|ENST00000362089|CD247	ENST00000483825.5_1_1:167400920-167403349:-|nuORF	ENST00000483825.5_1_1:167400920-167403349:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3325805664062	2	521.747324	1041.4801	-0.25096	-0.00013094	-0.23645	-0.00012337	-0.4874	-0.0002543	521.7470980512944	39.448	0.98125	39.225	38.755	39.736	-0.22311					43	25	3	0	0	0	0.024511	1	3366	3366		32.812	20.606	1	121830			30167	10212	20795	20835	34694	34694					-0.03898486425077863
KDKMRYSLK	9	Unmodified	_KDKMRYSLK_					0	0	0		ENST00000588065.1_3_17:40526083-40526143:-|nuORF	ENST00000588065.1_3_17:40526083-40526143:-|nuORF	ENST00000588065.1_3_17:40526083-40526143:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.8030395507812	2	584.828983	1167.64341	-0.9108	-0.00053266	3.8676	0.0022619	2.9568	0.0017292	584.8317555680231	53.814	0.18338	53.616	53.556	53.74	-0.19739					9	5	2	0	0	0	0.024466	1	5675	5675		31.53	2.3803	1	154350			30168	17281	20796	20836	34695	34695					0.06629736416630294
KDKPWFDF	8	Unmodified	_KDKPWFDF_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2935180664062	2	541.768917	1081.52328	-0.30712	-0.00016639	-0.53096	-0.00028766	-0.83808	-0.00045405	541.7684623364923	40.09	0.82095	40.09	39.627	40.448	0					54	22	3	0	0	0	0.027866	1	3425	3425		37.159	0	1	882470			30169	3485	20797	20837	34696	34696					-0.014219285855006092
KDKQFVAKV	9	Unmodified	_KDKQFVAKV_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.3054809570312	2	531.818941	1061.62333	-1.1793	-0.0006272	0.60179	0.00032004	-0.57755	-0.00030715	531.819115940147	63.039	0.56147	63.039	62.811	63.373	0					27	14	3	0	0	0	0.024344	1	7376	7376		45.972	9.5255	1	344470			30170	9965	20798	20838	34697	34697					0.09498308748334239
KDKREDTL	8	Unmodified	_KDKREDTL_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7508850097656	2	502.772188	1003.52982	-0.17712	-8.9052E-05	-0.67092	-0.00033732	-0.84804	-0.00042637	502.77166620531614	33.825	0.44168	33.882	33.654	34.096	0.056572					17	10	2	0	0	0	0.027866	1	2423	2423		39.253	0	1	2263100			30171	5804	20799	20839	34698	34698					0.028199645752465585
KDKREDTL	8	Unmodified	_KDKREDTL_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7509765625	2	502.772188	1003.52982	-0.36553	-0.00018378	-0.3084	-0.00015506	-0.67394	-0.00033884	502.7718664016225	33.948	0.34394	33.741	33.587	33.931	-0.20696					13	8	2	0	0	0	0.027866	1	2439	2439		21.96	2.8564	1	807620			30172	5804	20799	20839	34699	34699					0.028199645752465585
KDKRGSPN	8	Unmodified	_KDKRGSPN_					0	0	0		ENSG00000171004|ENST00000370833|HS6ST2;nc|ENSG00000171004|Q96MM7-3|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2471923828125	2	451.246141	900.477728	0.36809	0.0001661	2.774	0.0012517	3.142	0.0014178	451.24721146039826	24.015	0.75046	23.8	23.467	24.218	-0.2151					34	16	3	0	0	0	0.80469	1	1026	1026		58.782	0.97068	1	1223200			30173	8102	20800	20840	34700	34700					0.023508459521394798
KDKSHVKMG	9	Unmodified	_KDKSHVKMG_					0	0	0		ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2708129882812	2	515.279126	1028.5437	-1.4232	-0.00073337	2.2472	0.0011579	0.82395	0.00042456	515.2807725237009	51.342	0.32177	51.429	51.189	51.511	0.087006					11	8	2	0	0	0	0.024495	1	5330	5330		26.693	2.1737	1	135950			30174	8202	20801	20841	34701	34701					0.03056918802690234
KDKSHVKMG	9	Unmodified	_KDKSHVKMG_					0	0	0		ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.279126	1028.5437	-0.12322	-6.3491E-05	4.7288	0.0024367	4.6056	0.0023732	515.7831462259152	51.724	0.62047	51.724	51.286	51.906	0	0.18777	0.0012147	NaN	52.937	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199740			30175	8202	20801	20841							0.03056918802690234
KDKSHVKMG	9	Unmodified	_KDKSHVKMG_					0	0	0		ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.279126	1028.5437	-0.67957	-0.00035017	1.7618	0.0009078	1.0822	0.00055763	515.2812518618932	51.602	0.51088	51.455	51.3	51.811	-0.14735	-0.081066	-0.001843	NaN	52.937	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185660			30176	8202	20801	20841							0.03056918802690234
KDKTVAQAF	9	Unmodified	_KDKTVAQAF_					0	0	0			REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.24755859375	2	504.279649	1006.54475	0.31107	0.00015687	3.68	0.0018558	3.9911	0.0020126	504.28156057008164	20.126	0.34197	19.903	19.631	19.973	-0.22344					9	6	2	0	0	0	0.024397	1	462	462		47.657	3.1263	1	29633	+		30177	26870	20802	20842	34702	34702					0.041734564432204024
KDKTYLLQ	8	Unmodified	_KDKTYLLQ_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.78948974609375	2	504.78985	1007.56515	-0.5185	-0.00026173	-0.11909	-6.0118E-05	-0.6376	-0.00032185	504.7896284859397	35.079	0.98839	34.866	34.56	35.548	-0.21246					63	24	4	0	0	0	0.50453	1	2653	2653		85.161	5.2216	1	4053700	+		30178	23803	20803	20843	34703	34703					0.06166627103038991
KDKVKFTK	8	Unmodified	_KDKVKFTK_					0	0	0			REV__ENSG00000143278|ENST00000367412|F13B	REV__ENSG00000143278|ENST00000367412|F13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.78704833984375	2	497.30821	992.601866	-1.3626	-0.00067761	1.4184	0.00070537	0.055822	2.7761E-05	497.30876977419484	60.182	1.1538	60.261	59.685	60.839	0.078884					45	30	2	0	0	0	0.027866	1	6893	6893		41.427	9.4718	1	245050	+	+	30179	24219	20804	20844	34704	34704					0.10526923719612569
KDKVLVFF	8	Unmodified	_KDKVLVFF_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2694396972656	2	498.299853	994.585153	-0.22588	-0.00011255	0.068296	3.4032E-05	-0.15758	-7.8523E-05	498.29969501856226	61.248	0.53094	61.042	60.81	61.341	-0.20599					19	12	2	0	0	0	0.027866	1	6813	6813		17.365	1.7232	1	259130			30180	9617	20805	20845	34705	34705					0.0876442283366714
KDKVVDLL	8	Unmodified	_KDKVVDLL_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7640380859375	2	465.286943	928.559333	-0.25651	-0.00011935	0.76161	0.00035437	0.5051	0.00023502	465.28702296098515	21.959	0.47755	21.768	21.564	22.042	-0.19072					14	9	2	0	0	0	0.027866	1	708	708		42.396	5.237	1	42597			30181	18190	20806	20846	34706	34706					0.09219528591370363
KDLAAIPKVKA	11	Unmodified	_KDLAAIPKVKA_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.3054809570312	2	577.368798	1152.72304	-0.036438	-2.1038E-05	0.29956	0.00017296	0.26313	0.00015192	577.3688989932679	76.008	1.0941	76.02	75.681	76.775	0.011642					83	27	4	0	0	0	0.024731	1	9362	9362		16.007	11.101	1	2515600			30182	2062	20807	20847	34707	34707					0.1527912636227029
KDLATRNV	8	Unmodified	_KDLATRNV_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.7641296386719	2	458.764166	915.513779	0.84143	0.00038602	-0.36025	-0.00016527	0.48117	0.00022075	458.7638475529884	19.487	0.9084	19.487	19.268	20.176	0					45	18	4	0	0	0	0.6536	1	416	416		71.296	5.4925	1	313570			30183	7898	20808	20848	34708	34708					0.05264303129001746
KDLCVVLEF	9	Unmodified	_KDLCVVLEF_					0	0	0		ENST00000502366.5_1_4:113264513-113264714:+|nuORF	ENST00000502366.5_1_4:113264513-113264714:+|nuORF	ENST00000502366.5_1_4:113264513-113264714:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2464599609375	2	533.286085	1064.55762	-0.94285	-0.00050281	-2.7563	-0.0014699	-3.6991	-0.0019727	533.2840460992113	48.544	0.72936	48.446	47.892	48.621	-0.097549					30	19	2	0	0	0	0.024541	1	4834	4834		19.997	5.1319	1	385190			30184	15666	20809	20849	34709	34709					0.02792151511107477
KDLCVVLEF	9	Unmodified	_KDLCVVLEF_					0	0	0		ENST00000502366.5_1_4:113264513-113264714:+|nuORF	ENST00000502366.5_1_4:113264513-113264714:+|nuORF	ENST00000502366.5_1_4:113264513-113264714:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.286085	1064.55762	-0.88453	-0.00047171	-2.6225	-0.0013985	-3.507	-0.0018703	533.2847786798208	48.564	1.598	48.564	47.875	49.473	0	0.02878	0.00017991	NaN	14.137	78	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	723980			30185	15666	20809	20849							0.02792151511107477
KDLCVVLEF	9	Unmodified	_KDLCVVLEF_					0	0	0		ENST00000502366.5_1_4:113264513-113264714:+|nuORF	ENST00000502366.5_1_4:113264513-113264714:+|nuORF	ENST00000502366.5_1_4:113264513-113264714:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.286085	1064.55762	-0.85858	-0.00045787	-2.4557	-0.0013096	-3.3143	-0.0017675	533.2848447515829	48.774	1.3507	48.621	47.796	49.146	-0.15277	0.086236	0.00035779	NaN	14.137	66	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673530			30186	15666	20809	20849							0.02792151511107477
KDLDQNFRA	9	Unmodified	_KDLDQNFRA_					0	0	0			REV__ENSG00000163898|ENST00000296252|LIPH	REV__ENSG00000163898|ENST00000296252|LIPH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8182373046875	2	553.783087	1105.55162	-0.32432	-0.0001796	-3.9196	-0.0021706	-4.2439	-0.0023502	553.7806862123119	62.552	0.62308	62.615	62.401	63.024	0.062767					41	14	4	0	0	0	0.024495	1	7196	7196		26.693	7.5894	1	1967400	+		30187	25652	20810	20850	34710	34710					0.0030676932381084043
KDLECALLL	9	Carbamidomethyl (C)	_KDLEC(Carbamidomethyl (C))ALLL_	KDLEC(1)ALLL		KDLEC(110)ALLL		0	1	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7966918945312	2	537.796817	1073.57908	-1.6274	-0.00087522	1.9252	0.0010354	0.29781	0.00016016	537.7973863390522	55.239	0.68835	55.337	54.982	55.671	0.098015					52	18	4	0	0	0	0.11092	1	6020	6020		108.09	6.8349	1	1323600			30188	6126;18378	20811	20851	34711	34711	78				0.04523536539818451
KDLEKCRII	9	Unmodified	_KDLEKCRII_					0	0	0		ENST00000435088.1_1_10:71060267-71060456:-|nuORF	ENST00000435088.1_1_10:71060267-71060456:-|nuORF	ENST00000435088.1_1_10:71060267-71060456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2968139648438	2	559.323534	1116.63251	0.65311	0.0003653	-4.0965	-0.0022913	-3.4434	-0.001926	559.3211648457811	72.341	1.0332	72.351	71.953	72.987	0.0097733					47	25	3	0	0	0	0.024313	1	8740	8740		51.193	7.0759	1	2507400			30189	14257	20812	20852	34712	34712					0.07886334042336784
KDLEKLDLV	9	Unmodified	_KDLEKLDLV_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7821655273438	2	536.816064	1071.61758	-0.83267	-0.00044699	0.30139	0.00016179	-0.53128	-0.0002852	536.8160997325572	76.712	0.55455	76.544	76.181	76.735	-0.16854					22	12	2	0	0	0	0.024466	1	9053	9053		39.253	12.56	1	179650			30190	4957	20813	20853	34713	34713					0.08463165445982668
KDLEQSELH	9	Unmodified	_KDLEQSELH_					0	0	0			REV__ETV6|p.E444K|1|0.17|ENSG00000139083|chr12:11891017-11891017|G/A|missense_variant	REV__ETV6|p.E444K|1|0.17|ENSG00000139083|chr12:11891017-11891017|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2984619140625	2	549.774928	1097.5353	-0.54094	-0.00029739	4.0699	0.0022375	3.529	0.0019401	550.2776765500905	54.734	0.22887	54.588	54.533	54.761	-0.14609					8	5	2	0	0	0	0.024477	1	5836	5836		44.117	13.613	1	98950	+		30191	36016	20814	20854	34714	34714					-0.00956356632968891
KDLFAALPQV	10	Unmodified	_KDLFAALPQV_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2402954101562	2	551.318774	1100.623	-0.80673	-0.00044476	0.99627	0.00054926	0.18954	0.0001045	551.3189310423904	83.331	0.51073	83.331	83.051	83.562	0					16	11	2	0	0	0	0.03519	1	10386	10386		29.17	10.908	1	130460			30192	1061	20815	20855	34715	34715					0.07670889028440797
KDLGLSVRE	9	Unmodified	_KDLGLSVRE_					0	0	0		ENSG00000254221|ENST00000523390|PCDHGB1;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;PCDHGB1|p.A143Gfs*7|1|0.12|ENSG00000254221|chr5:141350682-141350683|-/GTCAG|frameshift_variant	ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000254221|ENST00000523390|PCDHGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.7744140625	2	508.790381	1015.56621	-0.939	-0.00047776	2.0801	0.0010584	1.1411	0.00058059	508.79388448516823	44.606	0.52358	44.362	44.115	44.638	-0.2444					19	13	2	0	0	0	0.023842	1	4152	4152		58.23	0	1	157860			30193	10876	20816	20856	34716	34716					0.05904841471954114
KDLGYAEEI	9	Unmodified	_KDLGYAEEI_					0	0	0			REV__ENSG00000025800|ENST00000373625|KPNA6;REV__ENSG00000196911|ENST00000368564|KPNA5;REV__ENSG00000114030|ENST00000344337|KPNA1	REV__ENSG00000196911|ENST00000368564|KPNA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2608642578125	2	519.261122	1036.50769	-0.14748	-7.6579E-05	-0.36019	-0.00018703	-0.50767	-0.00026361	519.2608873899943	39.773	1.0411	39.55	38.926	39.967	-0.22311					45	26	3	0	0	0	0.45795	1	3390	3390		62.107	6.6032	1	1211200	+		30194	20025;28235;22102	20817	20857	34717	34717					-0.00910259893203147
KDLIKQKDEDN	11	Unmodified	_KDLIKQKDEDN_					0	0	0			REV__ENSG00000109971|ENST00000534624|HSPA8	REV__ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.745361328125	3	449.236779	1344.68851	0.27015	0.00012136	1.5901	0.00071432	1.8602	0.00083568	449.2369999722404	46.82	0.73736	46.82	46.551	47.289	0					29	19	3	0	0	0	0.024789	1	4700	4700		7.6794	0	1	620450	+		30195	21828	20818	20858	34718	34718					0.02995213692861398
KDLISASKEV	10	Unmodified	_KDLISASKEV_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2831420898438	2	545.311146	1088.60774	0.41119	0.00022423	-4.2987	-0.0023441	-3.8875	-0.0021199	545.3079376244955	51.114	0.4594	50.933	50.723	51.182	-0.18071					22	11	3	0	0	0	0.03519	1	5247	5247		28.081	11.608	1	203490	+		30196	25524	20819	20859	34719	34719					0.06697977440603609
KDLIWTLF	8	Unmodified	_KDLIWTLF_					0	0	0		nc|ENSG00000149294|P13591-6|NCAM1;nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1	nc|ENSG00000149294|P13591-6|NCAM1	nc|ENSG00000149294|P13591-6|NCAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7046508789062	2	518.29731	1034.58007	-0.20045	-0.00010389	-4.2509	-0.0022032	-4.4513	-0.0023071	518.2949876070562	34.463	0.54257	34.239	33.997	34.54	-0.22412					31	13	3	0	0	0	0.027866	1	2538	2538		42.396	8.2236	1	1239300			30197	6079	20820	20860	34720	34720					0.06416118971037577
KDLKEEVKV	9	Unmodified	_KDLKEEVKV_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2830810546875	2	544.321514	1086.62847	-1.7737	-0.00096548	-1.0264	-0.00055869	-2.8001	-0.0015242	544.3210051149578	51.863	0.85668	51.594	51.012	51.869	-0.26903					24	22	2	0	0	0	0.024374	1	5277	5277		25.574	0	1	225220	+		30198	24805	20821	20861	34721	34721					0.08862567820256118
KDLKELSQLNL	11	Unmodified	_KDLKELSQLNL_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1;ENSG00000171509|ENST00000307765|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	3	434.253882	1299.73982	0.061572	2.6738E-05	0.80465	0.00034942	0.86623	0.00037616	434.25423716943783	46.93	0.53585	46.777	46.479	47.015	-0.15301					18	13	2	0	0	0	0.024757	1	4678	4678		28.577	0	1	83137			30199	8165	20822	20862	34722	34722					0.10193582457577577
KDLKFVSDV	9	Unmodified	_KDLKFVSDV_					0	0	0		ENSG00000086102|ENST00000379540|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF	ENSG00000086102|ENST00000379540|NFX1	ENSG00000086102|ENST00000379540|NFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.767333984375	2	525.795132	1049.57571	-0.23563	-0.00012389	4.2455	0.0022323	4.0099	0.0021084	525.7972180504663	31.246	0.57308	31.094	30.806	31.379	-0.15231					29	14	3	0	0	0	0.024021	1	2023	2023		19.104	0	1	1169800			30200	1810	20823	20863	34723	34723					0.05290609757457787
KDLKIDIMG	9	Unmodified	_KDLKIDIMG_					0	0	0			REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8258666992188	2	516.791535	1031.56852	-0.58093	-0.00030022	1.4644	0.0007568	0.88348	0.00045658	516.7921948033462	56.697	0.43868	56.697	56.497	56.936	0					29	12	3	0	0	0	0.024263	1	6345	6345		60.972	21.719	1	790110	+		30201	24981	20824	20864	34724	34724					0.05399553885399655
KDLKIDIMG	9	Unmodified	_KDLKIDIMG_					0	0	0			REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8257446289062	2	516.791535	1031.56852	-0.50299	-0.00025994	1.1001	0.00056854	0.59716	0.00030861	516.7920350567507	56.844	0.59608	56.68	56.313	56.909	-0.16431					24	13	2	0	0	0	0.024263	1	6362	6362		60.972	8.0352	1	510270	+		30202	24981	20824	20864	34725	34725					0.05399553885399655
KDLKIDIMG	9	Unmodified	_KDLKIDIMG_					0	0	0			REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8262329101562	2	516.791535	1031.56852	-0.84039	-0.00043431	1.131	0.00058447	0.29057	0.00015016	516.7921822903858	56.531	0.8447	56.629	56.209	57.053	0.097897					32	18	2	0	0	0	0.024263	1	6264	6264		60.972	16.855	1	613690	+		30203	24981	20824	20864	34726	34726					0.05399553885399655
KDLKIDIMG	9	Unmodified	_KDLKIDIMG_					0	0	0			REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	REV__nc|ENSG00000154917|Q9NRW1-2|RAB6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8259887695312	2	516.791535	1031.56852	0.35754	0.00018477	-1.3873	-0.00071692	-1.0297	-0.00053215	516.7911303364166	56.833	0.41233	56.631	56.443	56.855	-0.20208					15	10	2	0	0	0	0.02435	1	6186	6186		60.972	16.855	1	239590	+		30204	24981	20824	20864	34727	34727					0.05399553885399655
KDLKKLSK	8	Unmodified	_KDLKKLSK_					0	0	0			REV__ENSG00000135249|ENST00000257700|RINT1	REV__ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.283203125	2	480.316035	958.617516	0.56247	0.00027016	3.1423	0.0015093	3.7048	0.0017795	480.31738464468515	51.985	0.54842	51.801	51.524	52.073	-0.18404					30	14	3	0	0	0	0.027866	1	5340	5340		37.812	7.3079	1	358250	+		30205	23523	20825	20865	34728	34728					0.1365521023664087
KDLKNIKSH	9	Unmodified	_KDLKNIKSH_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.792236328125	2	541.819473	1081.62439	-1.7942	-0.00097215	0.98468	0.00053352	-0.80955	-0.00043863	541.8199888718511	44.575	0.60345	44.426	44.127	44.73	-0.1488					43	17	3	0	0	0	0.024447	1	4240	4240		19.104	1.6355	1	700190			30206	107	20826	20866	34729	34729					0.08684523117199205
KDLKRYKF	8	Unmodified	_KDLKRYKF_					0	0	0		ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2984619140625	2	549.326934	1096.63931	-0.86688	-0.0004762	-3.4542	-0.0018975	-4.3211	-0.0023737	549.3245676794276	55.35	0.86366	55.204	54.533	55.396	-0.14609					32	23	2	0	0	0	0.027866	1	5836	5836		31.955	0	1	182940			30207	10577	20827	20867	34730	34730					0.09486014985213842
KDLKSNHL	8	Unmodified	_KDLKSNHL_					0	0	0			REV__ENSG00000163040|ENST00000409856|CCDC74A	REV__ENSG00000163040|ENST00000409856|CCDC74A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.2923583984375	2	477.771991	953.529429	0.008486	4.0544E-06	0.37601	0.00017965	0.3845	0.0001837	477.7719661225091	46.314	0.66219	46.365	46.096	46.758	0.051395					31	18	2	0	0	0	0.027866	1	4559	4559		29.15	20.327	1	287260	+		30208	24812	20828	20868	34731	34731					0.05080589646024691
KDLLASLYN	9	Unmodified	_KDLLASLYN_					0	0	0		nc|ENSG00000093167|Q9Y608-5|LRRFIP2	nc|ENSG00000093167|Q9Y608-5|LRRFIP2	nc|ENSG00000093167|Q9Y608-5|LRRFIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7698364257812	2	518.787307	1035.56006	-0.77448	-0.00040179	-2.4295	-0.0012604	-3.2039	-0.0016622	518.7858666561127	22.264	0.37212	22.264	22.06	22.432	0					9	7	2	0	0	0	0.024523	1	750	750		37.159	11.709	1	34097			30209	18113	20829	20869	34732	34732					0.04370323240414109
KDLLLLAW	8	Unmodified	_KDLLLLAW_					0	0	0		ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2816467285156	2	486.299853	970.585153	-0.4022	-0.00019559	-3.9889	-0.0019398	-4.3911	-0.0021354	486.29766655319486	57.021	0.8544	57.021	56.712	57.567	0					58	23	3	0	0	0	0.027866	1	6459	6459		38.806	3.1879	1	1369300			30210	8719	20830	20870	34733	34733					0.09868422833642398
KDLLTLMKL	9	Unmodified	_KDLLTLMKL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2429809570312	2	537.833203	1073.65185	-0.56776	-0.00030536	-0.040622	-2.1848E-05	-0.60839	-0.00032721	537.8330471248021	55.654	0.59135	55.498	55.26	55.852	-0.15601					36	15	3	0	0	0	0.02156	1	6130	6130		96.665	30.236	1	736230			30211	4436	20831	20871	34734	34734					0.11797290333265664
KDLLTLVTV	9	Unmodified	_KDLLTLVTV_					0	0	0			REV__ENSG00000168497|ENST00000304141|CAVIN2	REV__ENSG00000168497|ENST00000304141|CAVIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.31475830078125	2	501.3157	1000.61685	-0.099935	-5.0099E-05	-0.36654	-0.00018375	-0.46647	-0.00023385	501.3154273374625	60.396	0.87232	60.199	59.947	60.819	-0.19742					54	21	4	0	0	0	0.18994	1	6731	6731		90.601	7.8504	1	3648100	+		30212	26266	20832	20872	34735	34735					0.11656370796958981
KDLLTLVTV	9	Unmodified	_KDLLTLVTV_					0	0	0			REV__ENSG00000168497|ENST00000304141|CAVIN2	REV__ENSG00000168497|ENST00000304141|CAVIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3150939941406	2	501.3157	1000.61685	-0.66841	-0.00033509	0.093159	4.6702E-05	-0.57526	-0.00028838	501.31564040693235	60.35	0.95158	60.174	59.922	60.874	-0.1761					59	23	4	0	0	0	0.079716	1	6718	6718		117.81	16.558	1	4195100	+		30213	26266	20832	20872	34736	34736					0.11656370796958981
KDLLVRGVEA	10	Unmodified	_KDLLVRGVEA_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2764282226562	2	550.327131	1098.63971	-0.90015	-0.00049538	0.029853	1.6429E-05	-0.8703	-0.00047895	550.3273661201692	51.356	0.21567	51.207	51.082	51.298	-0.14916					9	5	2	0	0	0	0.03519	1	5405	5405		27.882	6.9353	1	85197	+		30214	23218	20833	20873	34737	34737					0.09433389914443069
KDLMTQNGI	9	Unmodified	_KDLMTQNGI_					0	0	0		ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.3099365234375	2	510.263142	1018.51173	0.15013	7.6604E-05	4.2142	0.0021504	4.3643	0.002227	510.2660938323072	77.088	0.29706	77.088	76.955	77.252	0					10	6	2	0	0	0	0.024466	1	9524	9524		39.253	7.298	1	161860			30215	9349	20834	20874	34738	34738					0.0032150632887351094
KDLPLVSIK	9	Unmodified	_KDLPLVSIK_					0	0	0		ENST00000536374.1_1_9:80851152-80851524:+|nuORF;ENST00000476652.2_1_9:80851152-80881675:+|nuORF;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78	ENST00000536374.1_1_9:80851152-80851524:+|nuORF	ENST00000536374.1_1_9:80851152-80851524:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7140808105469	2	506.823692	1011.63283	0.0034086	1.7276E-06	-3.3715	-0.0017087	-3.3681	-0.001707	506.82195729988763	34.318	0.3385	34.094	33.96	34.299	-0.22412					18	8	4	0	0	0	0.024523	1	2518	2518		15.642	0	1	262040			30216	6002	20835	20875	34739	34739					0.12748077033859317
KDLPQSSLLY	10	Unmodified	_KDLPQSSLLY_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.7794189453125	2	582.318971	1162.62339	-1.2171	-0.00070875	2.9317	0.0017072	1.7146	0.00099845	582.3208580859174	45.07	0.27506	44.818	44.63	44.905	-0.25252					9	6	2	0	0	0	0.03519	1	4227	4227		36.447	9.7538	1	51083			30217	4293	20836	20876	34740	34740					0.04858263957657982
KDLQEVIEL	9	Unmodified	_KDLQEVIEL_					0	0	0		ENST00000460483.5_1_10:112057460-112064550:-|nuORF;ENSG00000119953|ENST00000369603|SMNDC1	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.296630859375	2	543.805697	1085.59684	-1.3941	-0.00075812	0.069838	3.7978E-05	-1.3243	-0.00072014	543.8058195477366	62.614	0.59575	62.614	62.384	62.98	0					39	14	4	0	0	0	0.024466	1	7280	7280		31.53	0	1	1040000			30218	3780	20837	20877	34741	34741					0.05746575066314108
KDLQLAKG	8	Unmodified	_KDLQLAKG_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2115478515625	2	436.763635	871.512717	0.51077	0.00022309	-0.16878	-7.3717E-05	0.34199	0.00014937	436.763401828169	42.707	0.87088	42.733	42.427	43.298	0.026012					53	23	4	0	0	0	0.027866	1	3877	3877		25.45	12.491	1	2389900	+		30219	20753	20838	20878	34742	34742					0.07182088760077932
KDLQSHMIK	9	Unmodified	_KDLQSHMIK_					0	0	0		ENST00000498342.5_1_1:6647219-6648294:+|nuORF;ENSG00000204859|ENST00000377674|ZBTB48	ENST00000498342.5_1_1:6647219-6648294:+|nuORF	ENST00000498342.5_1_1:6647219-6648294:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2999267578125	2	550.300059	1098.58556	-0.47614	-0.00026202	0.22244	0.00012241	-0.2537	-0.00013961	550.3000281645001	66.662	0.81094	66.662	66.434	67.245	0					42	20	3	0	0	0	0.16468	1	7946	7946		96.19	2.995	1	1815400			30220	10385	20839	20879	34743	34743					0.04021474491196386
KDLQWKNL	8	Unmodified	_KDLQWKNL_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3077392578125	2	522.795466	1043.57638	-0.1728	-9.0339E-05	-2.7685	-0.0014473	-2.9413	-0.0015377	523.2956871195439	32.497	0.68466	32.56	32.278	32.962	0.062885					25	17	2	0	0	0	0.027866	1	2180	2180		32.812	4.9302	1	226210	+		30221	27729	20840	20880	34744	34744					0.05633449197171103
KDLRRAALPD	10	Unmodified	_KDLRRAALPD_					0	0	0		ENST00000216264.12_1_22:47081202-47081484:-|nuORF	ENST00000216264.12_1_22:47081202-47081484:-|nuORF	ENST00000216264.12_1_22:47081202-47081484:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.814453125	2	577.835654	1153.65676	0.15183	8.7734E-05	2.8258	0.0016328	2.9776	0.0017206	577.837172177079	71.394	0.91399	71.119	70.833	71.747	-0.2751					49	21	4	0	0	0	0.03519	1	8334	8334		20.03	0	1	1044800			30222	11159	20841	20881	34745	34745					0.08607310520210376
KDLSFIKV	8	Unmodified	_KDLSFIKV_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000123836|O60825-2|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7878112792969	2	475.289485	948.564418	0.046274	2.1993E-05	1.4032	0.00066691	1.4494	0.0006889	475.2895568906228	59.6	0.82295	59.685	59.426	60.249	0.085682					34	21	3	0	0	0	0.027866	1	6714	6714		27.882	0	1	468940			30223	4000	20842	20882	34746	34746					0.08807832453999254
KDLSLLLKV	9	Unmodified	_KDLSLLLKV_					0	0	0			REV__ENST00000419152.6_1_8:144676198-144679618:-|nuORF	REV__ENST00000419152.6_1_8:144676198-144679618:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2994384765625	2	514.839342	1027.66413	-0.50857	-0.00026183	-0.31598	-0.00016268	-0.82455	-0.00042451	514.838922432426	52.506	0.20316	52.506	52.431	52.634	0					7	4	2	0	0	0	0.024397	1	5642	5642		39.253	6.4404	1	44040	+		30224	32136	20843	20883	34747	34747					0.15140650067951356
KDLSRTTL	8	Unmodified	_KDLSRTTL_					0	0	0		CON__Q148H6	CON__Q148H6	CON__Q148H6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.26409912109375	2	467.271824	932.529095	-0.11929	-5.574E-05	-0.90152	-0.00042126	-1.0208	-0.000477	467.2713404470476	43.441	0.35398	43.329	43.109	43.463	-0.11253					16	9	2	0	0	0	0.027866	1	4001	4001		23.042	7.4007	1	131670		+	30225	539	20844	20884	34748	34748					0.060131699261773974
KDLSRTTSI	9	Unmodified	_KDLSRTTSI_					0	0	0			REV__PCDHA5|p.E638K|1|0.12|ENSG00000204965|chr5:140823687-140823687|G/A|missense_variant	REV__PCDHA5|p.E638K|1|0.12|ENSG00000204965|chr5:140823687-140823687|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7685852050781	2	510.787838	1019.56112	0.35015	0.00017885	4.2449	0.0021683	4.5951	0.0023471	510.78971071040206	69.403	0.41508	69.11	68.896	69.312	-0.29291					16	10	2	0	0	0	0.024374	1	8305	8305		32.812	4.9302	1	375990	+		30226	37357	20845	20885	34749	34749					0.05212537609315859
KDLTADRTI	9	Unmodified	_KDLTADRTI_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2952880859375	2	516.787838	1031.56112	-0.88038	-0.00045497	-1.2112	-0.00062591	-2.0915	-0.0010809	517.2893834629436	37.832	1.3488	37.614	36.835	38.184	-0.21849					72	36	3	0	0	0	0.024484	1	2941	2941		23.523	0	1	437810			30227	4590	20846	20886	34750	34750					0.04660537609311177
KDLTIQPSL	9	Unmodified	_KDLTIQPSL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	OPSCC_39_ClassI_Rep-1	1	507.7977294921875	2	507.795132	1013.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.712	1	57.712	57.212	58.212	0								0	0	0	0.23308	1	6506	6506		72.879	3.2516	1				30228	6479	20847	20887	34751	34751					0.06946609757483202
KDLTKRSILQ	10	Unmodified	_KDLTKRSILQ_					0	0	0			REV__EPPK1|p.E1546K|1|0.5|ENSG00000261150|chr8:143868618-143868618|C/T|missense_variant	REV__EPPK1|p.E1546K|1|0.5|ENSG00000261150|chr8:143868618-143868618|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.88775634765625	3	401.24695	1200.71902	0.098611	3.9567E-05	0.39413	0.00015814	0.49274	0.00019771	401.2467411427161	30.527	0.25062	30.535	30.373	30.624	0.0086689					9	5	2	0	0	0	0.03519	1	1961	1961		48.188	0	1	44252	+		30229	36003	20848	20888	34752	34752					0.12669036868578587
KDLTQCVTC	9	Unmodified	_KDLTQCVTC_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3236999511719	2	505.735902	1009.45725	-0.85926	-0.00043456	-2.5741	-0.0013018	-3.4333	-0.0017364	505.7343146622769	39.287	0.38988	39.188	38.914	39.304	-0.098751					17	10	2	0	0	0	0.02435	1	3321	3321		51.335	15.717	1	114910			30230	5341	20849	20889	34753	34753					-0.0470982881420241
KDLTQCVTC	9	Unmodified	_KDLTQCVTC_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3236999511719	2	505.735902	1009.45725	-0.81443	-0.00041189	-3.3119	-0.001675	-4.1264	-0.0020869	505.73425994266063	39.385	0.39116	39.409	39.17	39.562	0.023727					16	10	2	0	0	0	0.024323	1	3293	3293		27.882	3.3631	1	122520			30231	5341	20849	20889	34754	34754					-0.0470982881420241
KDLVSRLLV	9	Unmodified	_KDLVSRLLV_					0	0	0		nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000163673|ENST00000636136|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8344116210938	2	521.834591	1041.65463	0.36136	0.00018857	-0.80413	-0.00041962	-0.44277	-0.00023105	521.8340958344138	69.57	1.0639	69.277	68.896	69.96	-0.29292					79	26	4	0	0	0	0.67687	1	8360	8360		47.657	3.2801	1	4184400			30232	7129	20850	20890	34755	34755					0.13546881782394848
KDLWGTIN	8	Unmodified	_KDLWGTIN_					0	0	0			REV__ENSG00000133020|ENST00000403437|MYH8	REV__ENSG00000133020|ENST00000403437|MYH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2451477050781	2	473.753267	945.491981	0.17001	8.0543E-05	0.27842	0.0001319	0.44843	0.00021245	473.75355533354104	45.462	0.4688	45.506	45.247	45.716	0.043877					21	13	2	0	0	0	0.027866	1	4393	4393		38.806	9.6566	1	374910	+		30233	23337	20851	20891	34756	34756					0.017054983804428048
KDLYKAALRAG	11	Unmodified	_KDLYKAALRAG_					0	0	0			REV__nc|ENSG00000047932|Q9HD26-3|GOPC	REV__nc|ENSG00000047932|Q9HD26-3|GOPC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5547790527344	3	402.571545	1204.69281	0.55646	0.00022402	-3.4509	-0.0013892	-2.8944	-0.0011652	402.57010408625325	22.114	0.52015	21.929	21.715	22.236	-0.18539					15	10	2	0	0	0	0.024736	1	781	781		19.263	2.5453	1	99266	+		30234	20133	20852	20892	34757	34757					0.09864767697081334
KDLYKAALRAG	11	Unmodified	_KDLYKAALRAG_					0	0	0			REV__nc|ENSG00000047932|Q9HD26-3|GOPC	REV__nc|ENSG00000047932|Q9HD26-3|GOPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	402.571545	1204.69281	1.0162	0.00040911	-3.9211	-0.0015785	-2.9049	-0.0011694	402.5698008688336	21.935	0.42799	21.746	21.531	21.959	-0.18894	-0.10019	-0.0007117	NaN	14.086	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101200	+		30235	20133	20852	20892							0.09864767697081334
KDLYKAALRAG	11	Unmodified	_KDLYKAALRAG_					0	0	0			REV__nc|ENSG00000047932|Q9HD26-3|GOPC	REV__nc|ENSG00000047932|Q9HD26-3|GOPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	402.571545	1204.69281	-0.67099	-0.00027012	-2.26	-0.00090982	-2.931	-0.0011799	402.5704948540654	22.066	0.43376	21.864	21.663	22.097	-0.20199	0.017783	0.0012945	NaN	14.086	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81551	+		30236	20133	20852	20892							0.09864767697081334
KDLYPVALP	9	Unmodified	_KDLYPVALP_					0	0	0			REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.77801513671875	2	508.294768	1014.57498	-0.15397	-7.8262E-05	-3.4226	-0.0017397	-3.5766	-0.001818	508.2921448293954	49.601	0.88277	49.449	49.148	50.031	-0.1512					50	23	3	0	0	0	0.024263	1	5125	5125		34.173	0	1	1244700	+		30237	37164	20853	20893	34758	34758					0.06827815108408686
KDMDIITKF	9	Unmodified	_KDMDIITKF_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.2799072265625	2	555.796817	1109.57908	-0.38102	-0.00021177	2.1282	0.0011829	1.7472	0.0009711	555.799987564761	42.671	0.22083	42.439	42.273	42.494	-0.23186					6	5	2	0	0	0	0.024457	1	3843	3843		29.15	0	1	60816			30238	7441	20854	20894	34759	34759					0.028675365398157737
KDMETVTL	8	Unmodified	_KDMETVTL_					0	0	0		ENST00000275364.7_1_7:2770568-2770751:-|nuORF	ENST00000275364.7_1_7:2770568-2770751:-|nuORF	ENST00000275364.7_1_7:2770568-2770751:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.76409912109375	2	468.738968	935.463383	-0.48894	-0.00022918	1.0979	0.00051464	0.60899	0.00028546	468.73951446463195	72.023	2.163	71.817	71.382	73.545	-0.20614					69	52	2	0	0	0	0.027866	1	8430	8430		16.473	0	1	214040			30239	11687	20855	20895	34760	34760					-0.0069298731101525846
KDMIRWIL	8	Unmodified	_KDMIRWIL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7967529296875	2	537.810062	1073.60557	-0.34535	-0.00018573	3.6035	0.001938	3.2581	0.0017522	537.8118886297761	75.795	0.25233	75.806	75.61	75.863	0.011635					8	6	2	0	0	0	0.027866	1	9222	9222		42.396	0	1	216080			30240	981	20856	20896	34761	34761					0.0717127022180648
KDMLSIIQLIL	11	Unmodified	_KDMLSIIQLIL_					0	0	0			REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.53045654296875	3	429.596592	1285.76795	2.0953	0.00090012	2.3586	0.0010132	4.4539	0.0019134	429.5976906103764	23.38	0.20473	23.189	23.079	23.284	-0.19117					6	4	2	0	0	0	0.024738	1	905	905		25.068	9.1471	1	36143	+		30241	20606	20857	20897	34762	34762					0.13649189113311877
KDMLSIIQLIL	11	Unmodified	_KDMLSIIQLIL_					0	0	0			REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	429.596592	1285.76795	-0.48384	-0.00020786	3.6535	0.0015695	3.1696	0.0013617	429.5982006152212	23.328	0.23503	23.328	23.206	23.441	0	0.060114	0.00018382	NaN	25.068	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30418	+		30242	20606	20857	20897							0.13649189113311877
KDMLSIIQLIL	11	Unmodified	_KDMLSIIQLIL_					0	0	0			REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	429.596592	1285.76795	-0.17674	-7.5925E-05	3.11	0.001336	2.9332	0.0012601	429.9325188036488	23.255	0.27805	23.331	23.156	23.434	0.076241	0.063553	-0.00051668	NaN	25.068	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36681	+		30243	20606	20857	20897							0.13649189113311877
KDMLSIIQLIL	11	Unmodified	_KDMLSIIQLIL_					0	0	0			REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	REV__PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	429.596592	1285.76795	-0.02707	-1.1629E-05	3.9792	0.0017094	3.9521	0.0016978	429.5983083245602	23.403	0.21399	23.223	23.067	23.281	-0.17989	-0.044599	0.00060358	NaN	25.068	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54464	+		30244	20606	20857	20897							0.13649189113311877
KDNAPEIL	8	Unmodified	_KDNAPEIL_					0	0	0		PCDHGA6|p.N556K|1|0.64|ENSG00000253731|chr5:141375751-141375751|T/G|missense_variant	PCDHGA6|p.N556K|1|0.64|ENSG00000253731|chr5:141375751-141375751|T/G|missense_variant	PCDHGA6|p.N556K|1|0.64|ENSG00000253731|chr5:141375751-141375751|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.263427734375	2	450.245275	898.475997	0.087133	3.9231E-05	3.2166	0.0014482	3.3037	0.0014875	450.2468303102113	61.013	0.14969	61.013	60.921	61.07	0					5	3	2	0	0	0	0.027866	1	7033	7033		30.504	1.3541	1	109240			30245	18952	20858	20898	34763	34763					0.022697921435110402
KDNASKLL	8	Unmodified	_KDNASKLL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.2249450683594	2	444.761092	887.507631	-0.86917	-0.00038658	0.9085	0.00040406	0.039321	1.7489E-05	444.76135701647667	29.932	0.64071	29.76	29.447	30.088	-0.17258					27	14	3	0	0	0	0.027866	1	1911	1911		21.96	0	1	242480			30246	2051	20859	20899	34764	34764					0.059377848974691005
KDNGFVPKH	9	Unmodified	_KDNGFVPKH_					0	0	0		ENST00000382004.7_1_9:3222690-3222858:-|nuORF	ENST00000382004.7_1_9:3222690-3222858:-|nuORF	ENST00000382004.7_1_9:3222690-3222858:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2472534179688	2	521.277441	1040.54033	0.79702	0.00041547	-0.8253	-0.00043021	-0.028277	-1.474E-05	521.2771754811456	83.665	0.54446	83.496	83.246	83.79	-0.16916					20	12	2	0	0	0	0.024381	1	10086	10086		29.15	0	1	114180			30247	13352	20860	20900	34765	34765					0.02167992020326892
KDNIYMLCY	9	Unmodified	_KDNIYMLCY_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3-1|USP25;REV__nc|ENSG00000048028|Q96RU2-2|USP28	REV__nc|ENSG00000155313|Q9UHP3-1|USP25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.3363037109375	2	581.767203	1161.51985	-0.41299	-0.00024026	-3.2418	-0.001886	-3.6548	-0.0021262	581.7649436615953	53.549	0.39921	53.645	53.407	53.806	0.095669					23	10	3	0	0	0	0.024506	1	5750	5750		10.866	0	1	311500	+		30248	25002;20135	20861	20901	34766	34766					-0.0544468274601968
KDNLAVNAVA	10	Unmodified	_KDNLAVNAVA_					0	0	0		nc|ENSG00000105982|Q9H0A6-6|RNF32;ENST00000469382.1_1_7:156436571-156447430:+|nuORF;nc|ENSG00000105982|Q9H0A6-5|RNF32;nc|ENSG00000105982|Q9H0A6-4|RNF32;nc|ENSG00000105982|Q9H0A6-2|RNF32;ENSG00000105982|ENST00000317955|RNF32	nc|ENSG00000105982|Q9H0A6-6|RNF32	nc|ENSG00000105982|Q9H0A6-6|RNF32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7696228027344	2	507.782556	1013.55056	-0.41489	-0.00021067	-0.35024	-0.00017785	-0.76513	-0.00038852	507.78143869042475	36.528	0.27907	36.528	36.406	36.685	0					12	7	2	0	0	0	0.03519	1	2898	2898		31.53	6.0796	1	65932			30249	2742	20862	20902	34767	34767					0.044325549548943854
KDNLAVNAVA	10	Unmodified	_KDNLAVNAVA_					0	0	0		nc|ENSG00000105982|Q9H0A6-6|RNF32;ENST00000469382.1_1_7:156436571-156447430:+|nuORF;nc|ENSG00000105982|Q9H0A6-5|RNF32;nc|ENSG00000105982|Q9H0A6-4|RNF32;nc|ENSG00000105982|Q9H0A6-2|RNF32;ENSG00000105982|ENST00000317955|RNF32	nc|ENSG00000105982|Q9H0A6-6|RNF32	nc|ENSG00000105982|Q9H0A6-6|RNF32	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.782556	1013.55056	0.80887	0.00041073	6.6972	0.0034007	7.506	0.0038114	507.78492761297093	36.954	0.39965	36.745	36.445	36.844	-0.2092	0.10849	0.0037748	NaN	67.494	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58128			30250	2742	20862	20902							0.044325549548943854
KDNLWKCN	8	Unmodified	_KDNLWKCN_					0	0	0		nc|ENSG00000144771|Q9HBL6-2|LRTM1;ENSG00000144771|ENST00000273286|LRTM1	nc|ENSG00000144771|Q9HBL6-2|LRTM1	nc|ENSG00000144771|Q9HBL6-2|LRTM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.3033447265625	2	510.750201	1019.48585	-0.36237	-0.00018508	2.5973	0.0013266	2.235	0.0011415	510.7514738373338	26.592	0.70988	26.592	26.283	26.993	0					37	16	3	0	0	0	0.027866	1	1401	1401		21.96	0	1	599930			30251	5766	20863	20903	34768	34768					-0.023113431227670844
KDNNLVRHLD	10	Unmodified	_KDNNLVRHLD_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.7557373046875	3	408.554554	1222.64183	-0.12273	-5.014E-05	-3.3052	-0.0013504	-3.4279	-0.0014005	408.88604756754097	38.768	0.11639	38.543	38.483	38.6	-0.2257					4	2	2	0	0	0	0.03519	1	3217	3217		10.104	5.4606	1	17764			30252	18052;6573;1442;1372	20864	20904	34769	34769					0.03941818652242546
KDNRGTQDA	9	Unmodified	_KDNRGTQDA_					0	0	0		ENST00000552090.1_1_12:49167835-49170266:-|nuORF;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	ENST00000552090.1_1_12:49167835-49170266:-|nuORF	ENST00000552090.1_1_12:49167835-49170266:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.2908630371094	2	502.741419	1003.46829	0.27879	0.00014016	3.8353	0.0019282	4.1141	0.0020683	502.7431881931096	54.982	0.64861	54.776	54.431	55.08	-0.20613					41	17	3	0	0	0	0.0242	1	5838	5838		42.864	19.342	1	1240000			30253	8455	20865	20905	34770	34770					-0.03330967124043127
KDNRIPLL	8	Unmodified	_KDNRIPLL_					0	0	0		nc|ENSG00000153982|Q8N9F7-3|GDPD1;nc|ENSG00000153982|Q8N9F7-2|GDPD1;ENSG00000153982|ENST00000284116|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.797607421875	2	484.798009	967.581465	0.55749	0.00027027	-1.5757	-0.00076388	-1.0182	-0.00049361	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.77775	2	6703	6703;6727		60.972	0	1	98413000			30254	6372	20866	20906	34771;34772	34771					0.09637753059814713
KDNRIPLL	8	Unmodified	_KDNRIPLL_					0	0	0		nc|ENSG00000153982|Q8N9F7-3|GDPD1;nc|ENSG00000153982|Q8N9F7-2|GDPD1;ENSG00000153982|ENST00000284116|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.79803466796875	2	484.798009	967.581465	1.4645	0.00071001	-2.4093	-0.001168	-0.94471	-0.00045799	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.59392	1	6718	6718		76.847	2.8719	1	119110000			30255	6372	20866	20906	34773	34773					0.09637753059814713
KDNRIPLL	8	Unmodified	_KDNRIPLL_					0	0	0		nc|ENSG00000153982|Q8N9F7-3|GDPD1;nc|ENSG00000153982|Q8N9F7-2|GDPD1;ENSG00000153982|ENST00000284116|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7974548339844	2	484.798009	967.581465	0.11867	5.753E-05	-1.1117	-0.00053896	-0.99305	-0.00048143	484.7976554584649	58.741	1.6893	58.833	58.297	59.986	0.091217					126	45	4	0	0	0	0.6536	2	6614	6614;6627		71.296	2.5089	1	93907000			30256	6372	20866	20906	34774;34775	34774					0.09637753059814713
KDNTFVLKV	9	Unmodified	_KDNTFVLKV_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8025512695312	2	532.310949	1062.60735	-0.40316	-0.00021461	-3.4104	-0.0018154	-3.8136	-0.00203	532.309436962531	78.871	1.4435	78.89	77.951	79.394	0.018669					67	34	3	0	0	0	0.024447	1	9764	9764		19.104	7.5925	1	196930			30257	6856	20867	20907	34776	34776					0.07854602511406483
KDNTFVLKV	9	Unmodified	_KDNTFVLKV_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8025512695312	2	532.310949	1062.60735	-0.55304	-0.00029439	0.31782	0.00016918	-0.23522	-0.00012521	532.3113106736298	79.602	0.74448	79.621	79.274	80.018	0.018677					25	17	2	0	0	0	0.024447	1	9764	9764		19.104	7.5925	1	106970			30258	6856	20867	20907	34777	34777					0.07854602511406483
KDNTKLVHLF	10	Unmodified	_KDNTKLVHLF_					0	0	0			REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.568359375	3	405.567912	1213.68191	0.39078	0.00015849	0.049998	2.0278E-05	0.44077	0.00017876	405.5678804193656	42.295	1.0287	42.163	41.825	42.853	-0.1322					83	29	4	0	0	0	1.0728	1	3875	3875		36.318	4.2835	1	5051500	+		30259	37089	20868	20908	34778	34778					0.08361365322775782
KDNTKLVHLF	10	Unmodified	_KDNTKLVHLF_					0	0	0			REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.56793212890625	3	405.567912	1213.68191	1.6524	0.00067016	-1.2881	-0.00052241	0.3643	0.00014775	405.56732697373536	42.229	1.1873	42.255	41.961	43.148	0.026012					94	33	5	0	0	0	1.0177	1	3818	3818		43.651	0	1	4909900	+		30260	37089	20868	20908	34779	34779					0.08361365322775782
KDPCPRNR	8	Unmodified	_KDPCPRNR_					0	0	0		ENST00000272462.2_1_2:110841994-110842294:-|nuORF	ENST00000272462.2_1_2:110841994-110842294:-|nuORF	ENST00000272462.2_1_2:110841994-110842294:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.305908203125	2	493.253443	984.492332	-0.58347	-0.0002878	0.3894	0.00019207	-0.19407	-9.5724E-05	493.2538568261401	85.073	0.28822	85.098	84.912	85.2	0.025536					10	6	2	0	0	0	0.027866	1	10582	10582		30.504	0	1	67063			30261	11654	20869	20909	34780	34780					-0.0005340517137710776
KDPDSWLL	8	Unmodified	_KDPDSWLL_					0	0	0			REV__nc|ENSG00000172531|P62136-3|PPP1CA	REV__nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.249755859375	2	487.2531	972.491647	-0.59158	-0.00028825	-1.2605	-0.00061419	-1.8521	-0.00090244	487.25249718107796	26.252	1.0913	26.333	25.75	26.841	0.081291					45	25	2	0	0	0	0.027866	1	1204	1204		49.442	3.4896	1	679110	+		30262	26682	20870	20910	34781	34781					0.004300786605767826
KDPDVAELFFK	11	Unmodified	_KDPDVAELFFK_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.89813232421875	3	436.899328	1307.67615	-0.68639	-0.00029988	-2.2959	-0.0010031	-2.9822	-0.0013029	436.8982214344693	33.585	1.1809	33.42	32.918	34.099	-0.16565					75	29	5	0	0	0	1.0341	1	2389	2389		29.245	0.66827	1	1949600			30263	6126;18378	20871	20911	34782	34782					0.03462222020425543
KDPELESVHCK	11	Unmodified	_KDPELESVHCK_					0	0	0			REV__FLNB|p.E2332K|1|0.11|ENSG00000136068|chr3:58159659-58159659|G/A|missense_variant	REV__FLNB|p.E2332K|1|0.11|ENSG00000136068|chr3:58159659-58159659|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.9344787597656	3	428.879939	1283.61799	-0.32853	-0.0001409	0.51893	0.00022256	0.1904	8.1658E-05	429.2143093197438	28.326	0.58081	28.157	27.886	28.467	-0.16897					28	13	3	0	0	0	0.02478	1	1636	1636		59.265	9.7988	1	156660	+		30264	36044	20872	20912	34783	34783					-0.01247782896462013
KDPELESVHCK	11	Unmodified	_KDPELESVHCK_					0	0	0			REV__FLNB|p.E2332K|1|0.11|ENSG00000136068|chr3:58159659-58159659|G/A|missense_variant	REV__FLNB|p.E2332K|1|0.11|ENSG00000136068|chr3:58159659-58159659|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.93438720703125	3	428.879939	1283.61799	-0.11863	-5.0876E-05	0.98909	0.0004242	0.87046	0.00037332	428.88022614717084	28.349	0.55673	28.198	27.885	28.441	-0.15195					27	13	3	0	0	0	0.024746	1	1630	1630		49.466	31.744	1	187420	+		30265	36044	20872	20912	34784	34784					-0.01247782896462013
KDPFARSL	8	Unmodified	_KDPFARSL_					0	0	0			REV__ENSG00000111713|ENST00000261195|GYS2	REV__ENSG00000111713|ENST00000261195|GYS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7377624511719	2	467.261259	932.507966	-0.71448	-0.00033385	0.35843	0.00016748	-0.35605	-0.00016637	467.2613274506348	44.763	1.0963	44.763	44.314	45.41	0					54	31	2	0	0	0	0.027866	1	4340	4340		44.117	0	1	4899500	+		30266	21941	20873	20913	34785	34785					0.03901204617318399
KDPFLYEA	8	Unmodified	_KDPFLYEA_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH;ENST00000565960.1_1_15:66801167-66811221:+|nuORF	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.26678466796875	2	491.74765	981.480748	-0.54035	-0.00026572	-1.4911	-0.00073325	-2.0315	-0.00099897	491.74694296433034	28.07	0.33843	28.151	27.95	28.289	0.080812					11	7	2	0	0	0	0.027866	1	1572	1572		33.516	0	1	65300			30267	8467	20874	20914	34786	34786					-0.010733237137287688
KDPFPQMV	8	Unmodified	_KDPFPQMV_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.80548095703125	2	481.244221	960.473888	-0.46345	-0.00022303	-4.2669	-0.0020534	-4.7303	-0.0022764	481.2419008886568	53.668	0.68835	53.521	53.132	53.821	-0.14724					43	18	3	0	0	0	0.027866	1	5788	5788		63.306	0	1	1575800	+		30268	20134	20875	20915	34787	34787					-0.007929598659302428
KDPKLGLDRSD	11	Unmodified	_KDPKLGLDRSD_					0	0	0			REV__ENSG00000052795|ENST00000264433|FNIP2	REV__ENSG00000052795|ENST00000264433|FNIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.83349609375	2	622.335684	1242.65681	0.63113	0.00039278	0.72094	0.00044866	1.3521	0.00084144	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.0624	1	13494	13494		21.686	3.4237	1	1535400	+		30269	20174	20876	20916	34788	34788					0.045192657295501704
KDPLSIAVE	9	Unmodified	_KDPLSIAVE_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000466876.1_1_3:195006441-195012466:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.30841064453125	2	486.274032	970.533512	-0.51814	-0.00025196	-3.772	-0.0018342	-4.2901	-0.0020862	486.2720490855582	20.847	0.47296	20.742	20.473	20.946	-0.10477					22	9	3	0	0	0	0.023635	1	563	563		56.721	3.3696	1	333660			30270	3355	20877	20917	34789	34789					0.047066343490769214
KDPPLKDIKQA	11	Unmodified	_KDPPLKDIKQA_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.7533874511719	3	418.246839	1251.71869	-0.51206	-0.00021417	-0.018091	-7.5664E-06	-0.53015	-0.00022173	418.2466146773453	45.781	0.42787	45.578	45.391	45.819	-0.20226					22	11	3	0	0	0	0.024735	1	4342	4342		16.53	0	1	197070	+		30271	22399	20878	20918	34790	34790					0.10289617148691832
KDPPPVPSLGL	11	Unmodified	_KDPPPVPSLGL_					0	0	0			REV__PPP2R5B|p.P17L|1|0.62|ENSG00000068971|chr11:64925784-64925784|C/T|missense_variant	REV__PPP2R5B|p.P17L|1|0.62|ENSG00000068971|chr11:64925784-64925784|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.279296875	2	560.324057	1118.63356	-0.58985	-0.0003305	0.84081	0.00047113	0.25097	0.00014062	560.3246496625576	85.447	0.21173	85.39	85.228	85.439	-0.057617					5	4	2	0	0	0	0.024736	1	10668	10668		36.447	0	1	35886	+		30272	37398	20879	20919	34791	34791					0.07898871682891695
KDPQGRII	8	Unmodified	_KDPQGRII_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.77655029296875	2	463.774534	925.534515	0.08753	4.0594E-05	4.4505	0.002064	4.538	0.0021046	463.7763512355861	73.483	2.1596	73.483	73.034	75.194	0					92	53	3	0	0	0	0.68164	1	8968	8968		68.787	6.6794	1	3968600			30273	6460	20880	20920	34792	34792					0.0687689350867231
KDPQWKNL	8	Unmodified	_KDPQWKNL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6;ENST00000564180.1_1_16:68877520-68901131:+|nuORF	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.29833984375	2	514.779816	1027.54508	-0.26159	-0.00013466	1.9307	0.00099389	1.6691	0.00085922	514.7806026370116	52.976	0.56368	52.829	52.569	53.132	-0.14724					24	14	2	0	0	0	0.027866	1	5667	5667		40.778	10.275	1	114660			30274	2460	20881	20921	34793	34793					0.03240876163090434
KDPRLKDA	8	Unmodified	_KDPRLKDA_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7356262207031	2	471.771991	941.529429	0.30362	0.00014324	-0.7234	-0.00034128	-0.41977	-0.00019804	471.77147049244013	37.5	0.6281	37.532	37.226	37.854	0.032269					28	16	2	0	0	0	0.027866	1	3050	3050		16.473	0	1	440910			30275	732	20882	20922	34794	34794					0.056325896460293734
KDPRLKDA	8	Unmodified	_KDPRLKDA_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.771991	941.529429	0.4789	0.00022593	-0.90942	-0.00042904	-0.43052	-0.00020311	471.7713308288587	37.504	0.67373	37.504	37.195	37.869	0	0.054019	-0.0001379	NaN	6.3127	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609890			30276	732	20882	20922							0.056325896460293734
KDPRLKDA	8	Unmodified	_KDPRLKDA_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.771991	941.529429	0.13402	6.3226E-05	-0.57724	-0.00027233	-0.44322	-0.0002091	471.77148245190716	37.377	0.74775	37.314	37.014	37.762	-0.063389	-0.13615	0.00017552	NaN	6.3127	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530300			30277	732	20882	20922							0.056325896460293734
KDPRVLDL	8	Unmodified	_KDPRVLDL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26666259765625	2	478.282192	954.549831	-0.88144	-0.00042157	2.2875	0.0010941	1.4061	0.00067249	478.2831171860231	48.868	1.028	48.937	48.66	49.688	0.069023					45	27	2	0	0	0	0.027866	1	4976	4976		16.473	0	1	927300			30278	1089	20883	20923	34795	34795					0.07073760305854648
KDPSIKKR	8	Unmodified	_KDPSIKKR_					0	0	0			REV__ENSG00000175018|ENST00000368821|TEX36	REV__ENSG00000175018|ENST00000368821|TEX36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.9278564453125	2	486.303458	970.592364	-0.51392	-0.00024992	0.20951	0.00010188	-0.30442	-0.00014804	486.3033654069924	45.292	0.41233	45.192	45.012	45.424	-0.099445					16	11	2	0	0	0	0.027866	1	4265	4265		20.947	0	1	172220	+		30279	26912	20884	20924	34796	34796					0.10589155434092845
KDPVIISLV	9	Unmodified	_KDPVIISLV_					0	0	0			REV__nc|ENSG00000188992|Q6XZB0-8|LIPI	REV__nc|ENSG00000188992|Q6XZB0-8|LIPI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.78167724609375	2	492.310418	982.606283	-0.50784	-0.00025002	-2.6717	-0.0013153	-3.1795	-0.0015653	492.30894395692974	32.386	0.75058	32.398	32.182	32.933	0.011799					41	19	3	0	0	0	0.02435	1	2283	2283		42.396	6.7778	1	899440	+		30280	28083	20885	20925	34797	34797					0.11428388142519452
KDPYSFGRTTI	11	Unmodified	_KDPYSFGRTTI_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A;TMEM63A|p.Q414Pfs*37|1|0.12|ENSG00000196187|chr1:225859334-225859335|-/A|frameshift_variant	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.738037109375	3	428.890944	1283.651	0.1276	5.4725E-05	1.1689	0.00050132	1.2965	0.00055604	428.891386285552	39.799	0.76507	39.649	39.168	39.933	-0.1497					25	19	2	0	0	0	0.024742	1	3400	3400		32.034	7.8023	1	169190			30281	9832	20886	20926	34798	34798					0.020521672179029338
KDQCAEGGHG	10	Unmodified	_KDQCAEGGHG_					0	0	0		nc|ENSG00000124159|O95460-3|MATN4;nc|ENSG00000124159|O95460|MATN4	nc|ENSG00000124159|O95460-3|MATN4	nc|ENSG00000124159|O95460-3|MATN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7947082519531	2	501.208898	1000.40324	-0.32384	-0.00016231	-3.3957	-0.001702	-3.7195	-0.0018643	501.2069134473113	52.566	0.47695	52.439	52.195	52.672	-0.12706					21	11	3	0	0	0	0.03519	1	5458	5458		33.922	18.28	1	364270			30282	18236	20887	20927	34799	34799					-0.09694284921545204
KDQFEQLYI	9	Unmodified	_KDQFEQLYI_					0	0	0			REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	592.3032836914062	2	592.303321	1182.59209	-1.6787	-0.00099431	1.875	0.0011105	0.19623	0.00011623	592.3043325256958	84.255	0.80085	84.183	83.83	84.631	-0.072769					32	18	2	0	0	0	0.096521	1	10505	10505		111.65	10.048	1	1030100	+		30283	19793	20888	20928	34800	34800					0.008096909235973726
KDQFEQLYI	9	Unmodified	_KDQFEQLYI_					0	0	0			REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	592.303321	1182.59209	-1.4989	-0.00088779	2.7754	0.0016439	1.2765	0.00075607	592.3042942359472	84.263	0.93332	84.263	83.735	84.669	0	0.14551	0.0019108	NaN	111.65	84	21	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970240	+		30284	19793	20888	20928							0.008096909235973726
KDQFEQLYI	9	Unmodified	_KDQFEQLYI_					0	0	0			REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	592.303321	1182.59209	-1.6787	-0.00099431	1.875	0.0011105	0.19623	0.00011623	592.3043325256958	84.255	0.80085	84.183	83.83	84.631	-0.072769	0.064876	0.00084412	NaN	111.65	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1030100	+		30285	19793	20888	20928							0.008096909235973726
KDQFEQLYI	9	Unmodified	_KDQFEQLYI_					0	0	0			REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.303321	1182.59209	-0.016029	-9.494E-06	0.89869	0.0005323	0.88266	0.0005228	592.805369879492	84.221	0.68639	84.017	83.608	84.294	-0.20329	-0.10034	-0.00031238	NaN	111.65	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79405	+		30286	19793	20888	20928							0.008096909235973726
KDQFEQLYI	9	Unmodified	_KDQFEQLYI_					0	0	0			REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.303321	1182.59209	-0.10413	-6.1676E-05	0.12905	7.6435E-05	0.024918	1.4759E-05	592.3034873407486	84.184	0.56451	84.025	83.628	84.192	-0.15868	-0.092449	-0.0012241	NaN	111.65	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101250	+		30287	19793	20888	20928							0.008096909235973726
KDQFEQLYI	9	Unmodified	_KDQFEQLYI_					0	0	0			REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	REV__ENST00000487720.1_1_7:26887667-26904048:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	592.303321	1182.59209	-0.16051	-9.5072E-05	0.98604	0.00058404	0.82553	0.00048897	592.3038231721632	84.172	0.64926	84.034	83.588	84.237	-0.13789	-0.083846	-0.0002089	NaN	111.65	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80031	+		30288	19793	20888	20928							0.008096909235973726
KDQLIQIT	8	Unmodified	_KDQLIQIT_					0	0	0			REV__CENPE|p.V2441I|1|0.35|ENSG00000138778|chr4:103120156-103120156|C/T|missense_variant	REV__CENPE|p.V2441I|1|0.35|ENSG00000138778|chr4:103120156-103120156|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7924499511719	2	479.782025	957.549496	-0.87501	-0.00041981	1.0915	0.00052367	0.21647	0.00010386	479.7820829037614	51.034	1.0616	51.121	50.549	51.61	0.087006					39	29	3	0	0	0	0.027866	1	5240	5240		19.104	4.2386	1	371470	+		30289	19289	20889	20929	34801	34801					0.06902340585986622
KDQLKLLY	8	Unmodified	_KDQLKLLY_					0	0	0		nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.7688903808594	2	510.808042	1019.60153	0.30043	0.00015346	-0.5863	-0.00029948	-0.28586	-0.00014602	510.8076142047077	68.564	0.84317	68.334	67.958	68.802	-0.23048					49	20	4	0	0	0	0.027866	1	7982	7982		25.45	0	1	842170			30290	2425	20890	20930	34802	34802					0.09251503999757915
KDQLQLWIR	9	Unmodified	_KDQLQLWIR_					0	0	0		ENSG00000136827|ENST00000351698|TOR1A;ENST00000473604.2_1_9:132580793-132585603:-|nuORF	ENSG00000136827|ENST00000351698|TOR1A	ENSG00000136827|ENST00000351698|TOR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5148620605469	3	400.568024	1198.68224	1.0325	0.00041357	-3.9587	-0.0015857	-2.9262	-0.0011721	400.5664029547292	24.424	0.94466	24.249	23.963	24.907	-0.17484					37	21	2	0	0	0	0.024528	1	1048	1048		15.333	0	1	326740			30291	5052	20891	20931	34803	34803					0.09084785042637122
KDQLTVTL	8	Unmodified	_KDQLTVTL_					0	0	0			REV__ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	REV__ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2478332519531	2	459.26875	916.522947	0.7246	0.00033279	-0.098536	-4.5255E-05	0.62607	0.00028753	459.26867776987206	71.575	1.8231	71.287	70.96	72.783	-0.28858					73	46	3	0	0	0	0.027866	1	8620	8620		49.442	1.7842	1	1086300	+		30292	28900	20892	20932	34804	34804					0.06134651694674176
KDQRKRMRA	9	Unmodified	_KDQRKRMRA_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	594.2644653320312	2	594.840748	1187.66694	-0.63266	-0.00037633	-1.8726	-0.0011139	-2.5053	-0.0014902	594.8396421406601	47.175	0.33626	46.981	46.779	47.116	-0.19387					13	8	2	0	0	0	0.024523	1	4587	4587		21.96	0	1	75000			30293	10801	20893	20933	34805	34805					0.08061594973810315
KDQVTTLEVSV	11	Unmodified	_KDQVTTLEVSV_					0	0	0		ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;nc|ENSG00000039068|P12830-2|CDH1;ENST00000562118.1_1_16:68857288-68867399:+|nuORF	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.24530029296875	3	406.890721	1217.65033	0.29525	0.00012014	0.87073	0.00035429	1.166	0.00047443	406.89102621582464	35.666	0.46386	35.453	35.154	35.618	-0.21246					16	11	2	0	0	0	0.024747	1	2707	2707		47.228	12.076	1	213250			30294	1057	20894	20934	34806	34806					0.05021327778194973
KDQVYALKL	9	Unmodified	_KDQVYALKL_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2765502929688	2	539.318774	1076.623	-0.37744	-0.00020356	-0.36334	-0.00019596	-0.74078	-0.00039952	539.3185565984999	61.484	0.67464	61.257	60.937	61.611	-0.22663					38	17	3	0	0	0	0.023274	1	7055	7055		77.318	6.0219	1	1353800			30295	4400	20895	20935	34807	34807					0.08774889028450161
KDQYRKQVR	9	Unmodified	_KDQYRKQVR_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.5788879394531	3	407.566794	1219.67855	0.56561	0.00023053	4.2206	0.0017202	4.7863	0.0019507	407.568695483014	34.246	0.18552	34.241	34.112	34.298	-0.0045624					5	4	2	0	0	0	0.024484	1	2513	2513		12.207	1.1099	1	21822			30296	2126	20896	20936	34808	34808					0.07750115268777336
KDQYRKQVR	9	Unmodified	_KDQYRKQVR_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	407.566794	1219.67855	-0.98783	-0.00040261	0.6165	0.00025127	-0.37133	-0.00015134	407.56865679242924	34.207	0.15589	34.031	33.972	34.128	-0.17557	-0.10496	-0.0022066	NaN	7.8045	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16380			30297	2126	20896	20936							0.07750115268777336
KDRCKLYC	8	Unmodified	_KDRCKLYC_					0	0	0		ENSG00000173157|ENST00000389420|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;nc|ENSG00000173157|P59510-2|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3162841796875	2	514.75443	1027.49431	-0.54622	-0.00028117	-0.68984	-0.0003551	-1.2361	-0.00063627	514.7539820426233	32.332	1.1457	32.344	31.902	33.048	0.011795					45	29	2	0	0	0	0.027866	1	2259	2259		25.45	0	1	256790			30298	8345	20897	20937	34809	34809					-0.018341124777862206
KDRFSESR	8	Unmodified	_KDRFSESR_					0	0	0			REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2992553710938	2	512.762155	1023.50976	0.79085	0.00040552	-1.2091	-0.00062	-0.41829	-0.00021448	512.7613905754239	22.802	0.87769	22.6	22.146	23.023	-0.20199					26	18	3	0	0	0	0.027866	1	865	865		40.778	0	1	143200	+		30299	24634	20898	20938	34810	34810					-0.0010578636471336722
KDRFYRKHDP	10	Unmodified	_KDRFYRKHDP_					0	0	0			REV__ENSG00000273079|ENST00000609686|GRIN2B	REV__ENSG00000273079|ENST00000609686|GRIN2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7893981933594	3	454.573949	1360.70002	-0.34413	-0.00015643	0.92108	0.0004187	0.57695	0.00026227	454.5743318693743	25.991	0.51291	25.968	25.651	26.164	-0.023088					17	11	2	0	0	0	0.03519	1	1235	1235		6.001	0	1	43892	+		30300	29173	20899	20939	34811	34811					0.03409500297516388
KDRGICLI	8	Unmodified	_KDRGICLI_					0	0	0			REV__ENST00000591983.5_1_17:76130956-76133538:+|nuORF	REV__ENST00000591983.5_1_17:76130956-76133538:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.266845703125	2	459.265487	916.516422	-1.0521	-0.0004832	-3.5929	-0.0016501	-4.645	-0.0021333	459.26362025265615	48.624	0.9376	48.348	48.116	49.053	-0.27598					32	25	2	0	0	0	0.027866	1	4819	4819		30.504	0	1	991880	+		30301	26201	20900	20940	34812	34812					0.05482435262297258
KDRGYRRLL	9	Unmodified	_KDRGYRRLL_					0	0	0			REV__nc|ENSG00000115325|Q99704-3|DOK1	REV__nc|ENSG00000115325|Q99704-3|DOK1	MSMS	OPSCC_39_ClassI_Rep-3	3	588.83935546875	2	588.851638	1175.68872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.343	1	18.406	17.906	18.906	0.063307								0	0	0	0.72132	1	240	240		15.642	3.4351	1		+		30302	19701	20901	20941	34813	34813					0.10790722994033786
KDRIVMEVT	9	Unmodified	_KDRIVMEVT_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2825927734375	2	545.799891	1089.58523	0.20101	0.00010971	-1.8093	-0.00098753	-1.6083	-0.00087781	545.7995175451432	51.788	0.62824	51.604	51.298	51.927	-0.18404					47	16	4	0	0	0	0.024466	1	5310	5310		18.262	1.7889	1	261550			30303	4705	20902	20942	34814	34814					0.0440205477134441
KDRKKADHL	9	Unmodified	_KDRKKADHL_					0	0	0		ENST00000602461.1_1_X:45605448-45605502:-|nuORF	ENST00000602461.1_1_X:45605448-45605502:-|nuORF	ENST00000602461.1_1_X:45605448-45605502:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.8216552734375	2	555.822547	1109.63054	5.4109	0.0030075	1.267	0.0007042	6.6778	0.0037117	555.8231550573174	16.779	0.27685	16.525	16.408	16.685	-0.25378					15	9	2	0	0	0	0.99726	1	80	80		20.947	6.0821	1	31375			30304	17528	20903	20943	34815	34815					0.08011041348754588
KDRLGKKV	8	Unmodified	_KDRLGKKV_					0	0	0		ENSG00000162998|ENST00000295113|FRZB	ENSG00000162998|ENST00000295113|FRZB	ENSG00000162998|ENST00000295113|FRZB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3290100097656	2	472.306001	942.597449	0.98981	0.00046749	-1.8113	-0.0008555	-0.82152	-0.00038801	472.3054087745147	18.478	0.49512	18.321	18.148	18.643	-0.15637					17	9	2	0	0	0	0.027866	1	338	338		12.207	0	1	278820			30305	7022	20904	20944	34816	34816					0.12385459296706358
KDRLHPALRIP	11	Unmodified	_KDRLHPALRIP_					0	0	0		ENST00000569858.1_1_16:15188300-15188411:+|nuORF	ENST00000569858.1_1_16:15188300-15188411:+|nuORF	ENST00000569858.1_1_16:15188300-15188411:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.7565002441406	3	439.270089	1314.78844	0.34545	0.00015175	2.4856	0.0010919	2.8311	0.0012436	439.2710555825362	41.258	0.4149	41.258	40.981	41.396	0					16	11	2	0	0	0	0.024789	1	3664	3664		15.921	2.9632	1	133850			30306	17012	20905	20945	34817	34817					0.14363540607951109
KDRLIKLL	8	Unmodified	_KDRLIKLL_					0	0	0			REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF	REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2883605957031	2	499.839677	997.664801	-1.3874	-0.00069347	0.92187	0.00046079	-0.46551	-0.00023268	499.84003718910105	49.234	0.4068	49.308	49.096	49.503	0.074196					18	10	2	0	0	0	0.027866	1	4979	4979		12.207	0	1	229070	+		30307	32696	20906	20946	34818	34818					0.16587489507651298
KDRLYYQRG	9	Unmodified	_KDRLYYQRG_					0	0	0			REV__ALG13|p.G496R|1|0.3|ENSG00000101901|chrX:111722843-111722843|G/A|missense_variant	REV__ALG13|p.G496R|1|0.3|ENSG00000101901|chrX:111722843-111722843|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.23046875	3	400.215761	1197.62546	0.83033	0.00033231	1.0468	0.00041896	1.8772	0.00075127	400.21629045554545	22.064	0.38092	22.064	21.771	22.152	0					17	7	3	0	0	0	0.024517	1	743	743		18.531	0	1	50123	+		30308	19105	20907	20947	34819	34819					0.034547374860949276
KDRNPLLL	8	Unmodified	_KDRNPLLL_					0	0	0			REV__ENST00000558272.5_1_15:80367629-80390798:+|nuORF	REV__ENST00000558272.5_1_15:80367629-80390798:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.79827880859375	2	484.798009	967.581465	0.55749	0.00027027	-1.5757	-0.00076388	-1.0182	-0.00049361	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.77775	1	6765	6765		60.972	5.4677	1	98413000	+		30309	35093	20908	20948	34820	34820					0.09637753059814713
KDRPQPLIL	9	Unmodified	_KDRPQPLIL_					0	0	0			REV__ENST00000446527.5_1_1:101552452-101552536:+|nuORF	REV__ENST00000446527.5_1_1:101552452-101552536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.3321533203125	2	540.332216	1078.64988	-0.62828	-0.00033948	0.27204	0.00014699	-0.35624	-0.00019249	540.332254778646	67.655	0.79381	67.367	66.992	67.785	-0.28834					49	19	3	0	0	0	0.50848	1	8048	8048		58.782	7.5893	1	1982800	+		30310	32629	20909	20949	34821	34821					0.11369997639667417
KDRPQPLIL	9	Unmodified	_KDRPQPLIL_					0	0	0			REV__ENST00000446527.5_1_1:101552452-101552536:+|nuORF	REV__ENST00000446527.5_1_1:101552452-101552536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.3318481445312	2	540.332216	1078.64988	-0.59897	-0.00032364	0.26079	0.00014091	-0.33818	-0.00018273	540.3322744216315	67.386	0.79572	67.409	67.028	67.824	0.023911					50	19	3	0	0	0	0.59099	1	7958	7958		53.351	3.9099	1	1646200	+		30311	32629	20909	20949	34822	34822					0.11369997639667417
KDRRAMRV	8	Unmodified	_KDRRAMRV_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2871704101562	2	516.298185	1030.58182	0.33735	0.00017417	0.37815	0.00019524	0.7155	0.00036941	516.2980539751672	49.647	0.29907	49.466	49.345	49.644	-0.18071					10	7	2	0	0	0	0.027866	1	4992	4992		34.173	11.13	1	273090			30312	3918	20910	20950	34823	34823					0.06774849508019543
KDRRRPAV	8	Unmodified	_KDRRRPAV_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.28753662109375	2	499.304324	996.594095	-0.64625	-0.00032267	1.8198	0.00090863	1.1735	0.00058596	499.30538975615747	48.805	0.39589	48.872	48.693	49.089	0.066795					15	10	3	0	0	0	0.027866	1	4970	4970		33.516	12.569	1	111580			30313	7462	20911	20951	34824	34824					0.09566209242700552
KDRRVDPS	8	Unmodified	_KDRRVDPS_					0	0	0			REV__USP14-THOC1|2|fusion	REV__USP14-THOC1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7770690917969	2	486.764697	971.514842	-1.4815	-0.00072116	0.84421	0.00041093	-0.63732	-0.00031023	486.7651705076822	29.815	0.52822	29.893	29.646	30.174	0.078346					27	12	3	0	0	0	0.027866	1	1804	1804		25.45	0	1	228050	+		30314	20627	20912	20952	34825	34825					0.027945174978981413
KDRRVVRL	8	Unmodified	_KDRRVVRL_					0	0	0		ENST00000570209.1_1_15:31125010-31126608:+|nuORF	ENST00000570209.1_1_15:31125010-31126608:+|nuORF	ENST00000570209.1_1_15:31125010-31126608:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.8162841796875	2	521.335624	1040.6567	-0.40308	-0.00021014	-0.59744	-0.00031147	-1.0005	-0.00052161	521.3357613370408	64.908	0.23526	64.652	64.504	64.739	-0.25563					8	5	2	0	0	0	0.027866	1	7389	7389		29.15	2.4566	1	98550			30315	17024	20913	20953	34826	34826					0.13799355310879946
KDRRWSVK	8	Unmodified	_KDRRWSVK_					0	0	0		ENST00000417396.2_1_5:64483922-64509924:-|nuORF;ENST00000381055.7_1_5:64483922-64510683:-|nuORF	ENST00000417396.2_1_5:64483922-64509924:-|nuORF	ENST00000417396.2_1_5:64483922-64509924:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.8114013671875	2	537.811982	1073.60941	0.72761	0.00039132	-2.3025	-0.0012383	-1.5749	-0.00084698	537.8106331820761	19.143	0.72743	19.143	18.873	19.6	0					34	14	4	0	0	0	0.44658	1	378	378		90.777	10.322	1	345450			30316	13328	20914	20954	34827	34827					0.07555076039898267
KDRSTLIRHHR	11	Unmodified	_KDRSTLIRHHR_					0	0	0		ENSG00000088876|ENST00000278772|ZNF343;nc|ENSG00000088876|Q6P1L6-2|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.3081970214844	3	473.607764	1417.80146	1.4046	0.00066522	0.39438	0.00018678	1.799	0.000852	473.6078131538075	17.719	0.3001	17.565	17.408	17.708	-0.15403					9	5	2	0	0	0	0.024789	1	211	211		26.75	9.583	1	15860			30317	1882	20915	20955	34828	34828					0.10927371720094925
KDRSTLIRHHR	11	Unmodified	_KDRSTLIRHHR_					0	0	0		ENSG00000088876|ENST00000278772|ZNF343;nc|ENSG00000088876|Q6P1L6-2|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	473.607764	1417.80146	-0.10088	-4.7776E-05	1.5375	0.00072815	1.4366	0.00068037	473.6084314689735	17.746	0.24976	17.539	17.364	17.614	-0.20669	0.02315	0.0037552	NaN	26.75	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13525			30318	1882	20915	20955							0.10927371720094925
KDRSTLIRHHR	11	Unmodified	_KDRSTLIRHHR_					0	0	0		ENSG00000088876|ENST00000278772|ZNF343;nc|ENSG00000088876|Q6P1L6-2|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	473.607764	1417.80146	4.0352	0.0019111	-2.1836	-0.0010342	1.8516	0.00087694	473.6068263801756	17.763	0.24749	17.512	17.371	17.619	-0.25049	-0.0037295	-0.0015318	NaN	26.75	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15859			30319	1882	20915	20955							0.10927371720094925
KDRTEKTTK	9	Unmodified	_KDRTEKTTK_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.8094482421875	2	553.811845	1105.60914	-0.83585	-0.0004629	3.6319	0.0020114	2.796	0.0015485	553.8138084789927	45.676	0.56018	45.474	45.259	45.819	-0.20226					40	15	4	0	0	0	0.024397	1	4386	4386		18.262	0	1	1218300			30320	3320	20916	20956	34829	34829					0.06055611529359339
KDRVAILV	8	Unmodified	_KDRVAILV_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2668151855469	2	457.295102	912.575651	0.042645	1.9501E-05	-0.65992	-0.00030178	-0.61727	-0.00028227	457.2950097127195	36.126	0.70405	35.909	35.746	36.45	-0.21661					32	18	3	0	0	0	0.027866	1	2778	2778		24.203	0	1	225610			30321	2360	20917	20957	34830	34830					0.11586654548125352
KDRVAILV	8	Unmodified	_KDRVAILV_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.295102	912.575651	-0.49012	-0.00022413	0.86351	0.00039488	0.37339	0.00017075	457.29517904279516	36.075	0.60541	35.87	35.718	36.323	-0.20518	-0.013852	0.0012111	NaN	31.955	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286200			30322	2360	20917	20957							0.11586654548125352
KDRVAILV	8	Unmodified	_KDRVAILV_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.295102	912.575651	0.84877	0.00038814	-1.5448	-0.00070644	-0.69605	-0.0003183	457.2945027181877	36.07	0.73409	35.872	35.641	36.375	-0.19829	-0.011454	-0.00099155	NaN	31.955	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236620			30323	2360	20917	20957							0.11586654548125352
KDRWIRLF	8	Unmodified	_KDRWIRLF_					0	0	0		ENSG00000135632|ENST00000389501|SMYD5	ENSG00000135632|ENST00000389501|SMYD5	ENSG00000135632|ENST00000389501|SMYD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3130493164062	2	567.33255	1132.65055	0.21252	0.00012057	2.1807	0.0012372	2.3932	0.0013577	567.3337919065198	67.89	0.20512	67.657	67.471	67.676	-0.23376					5	4	2	0	0	0	0.027866	1	7810	7810		14.865	0	1	68266			30324	4916	20918	20958	34831	34831					0.08952837079345954
KDRWKSLR	8	Unmodified	_KDRWKSLR_					0	0	0		nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8359985351562	2	544.819807	1087.62506	-0.070594	-3.8461E-05	3.0133	0.0016417	2.9427	0.0016032	544.8212336159277	71.611	0.74889	71.336	70.877	71.626	-0.27509					44	17	4	0	0	0	0.027866	1	8387	8387		21.96	9.0007	1	676230			30325	5265	20919	20959	34832	34832					0.08475362556941946
KDRWLGSY	8	Unmodified	_KDRWLGSY_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.3023681640625	2	512.764166	1023.51378	0.70644	0.00036224	-0.78492	-0.00040248	-0.078475	-4.0239E-05	512.7637051252813	51.884	0.67329	51.7	51.179	51.852	-0.18404					29	17	2	0	0	0	0.027866	1	5299	5299		29.15	0	1	214850	+		30326	25920	20920	20960	34833	34833					0.0029630312899371347
KDSAVRSSIF	10	Unmodified	_KDSAVRSSIF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.3218994140625	2	555.301113	1108.58767	0.051006	2.8324E-05	-3.7057	-0.0020578	-3.6547	-0.0020295	555.2989843481989	91.815	1.4336	91.674	91.062	92.496	-0.14095					50	33	2	0	0	0	0.03519	1	11240	11240		32.751	8.5478	1	95490			30327	5547	20921	20961	34834	34834					0.037722265006550515
KDSESKKWP	9	Unmodified	_KDSESKKWP_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7984619140625	2	552.787838	1103.56112	-1.0774	-0.00059557	1.1465	0.00063375	0.069072	3.8182E-05	552.7885254929425	55.554	0.41104	55.652	55.371	55.782	0.098015					13	10	2	0	0	0	0.024447	1	6067	6067		40.778	23.413	1	193170	+		30328	27338	20922	20962	34835	34835					0.013485376093512969
KDSFSHTPC	9	Unmodified	_KDSFSHTPC_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2257995605469	2	511.224017	1020.43348	1.209	0.00061807	1.8708	0.00095638	3.0798	0.0015744	511.2248206693708	25.003	0.56281	24.832	24.513	25.076	-0.17151					30	12	3	0	0	0	0.59099	1	1122	1122		53.351	5.6941	1	351610	+		30329	23531	20923	20963	34836	34836					-0.07591926256350234
KDSGGVKTCK	10	Unmodified	_KDSGGVKTCK_					0	0	0			REV__nc|ENSG00000134873|P78369-3|CLDN10	REV__nc|ENSG00000134873|P78369-3|CLDN10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7899169921875	2	511.768591	1021.52263	-0.41885	-0.00021435	-1.4072	-0.00072017	-1.8261	-0.00093453	511.76687714356615	41.59	0.50592	41.362	41.044	41.55	-0.2278					24	12	3	0	0	0	0.03519	1	3677	3677		22.58	5.2147	1	285550	+		30330	23490	20924	20964	34837	34837					0.012729087031630115
KDSIIGMFAET	11	Unmodified	_KDSIIGMFAET_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5598449707031	3	404.537401	1210.59037	0.34597	0.00013996	2.3684	0.00095812	2.7144	0.0010981	404.53765388208683	33.474	0.6021	33.243	32.876	33.478	-0.23107					20	14	2	0	0	0	0.024759	1	2392	2392		13.73	0	1	91053	+		30331	27624	20925	20965	34838	34838					-0.006496861567029555
KDSIKKKL	8	Unmodified	_KDSIKKKL_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2926940917969	2	480.316035	958.617516	0.22601	0.00010856	3.9329	0.0018891	4.159	0.0019976	480.31769838457734	78.407	0.51553	78.153	77.912	78.427	-0.25471					25	11	3	0	0	0	0.027866	1	9316	9316		37.159	3.6435	1	269940	+		30332	24627	20926	20966	34839	34839					0.13655210236652238
KDSKWVTIS	9	Unmodified	_KDSKWVTIS_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2474365234375	2	532.292756	1062.57096	-0.5199	-0.00027674	1.6814	0.00089501	1.1615	0.00061827	532.7952567398153	48.882	0.32478	48.7	48.558	48.883	-0.18206					10	8	2	0	0	0	0.024511	1	4899	4899		25.574	0	1	164480			30333	18049	20927	20967	34840	34840					0.04217725614716983
KDSLASQLH	9	Unmodified	_KDSLASQLH_					0	0	0		nc|ENSG00000154642|Q9NYK6-3|EURL;ENSG00000154642|ENST00000284881|C21orf91	nc|ENSG00000154642|Q9NYK6-3|EURL	nc|ENSG00000154642|Q9NYK6-3|EURL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.306884765625	2	499.766906	997.519259	-0.67764	-0.00033866	0.92855	0.00046406	0.25091	0.0001254	499.7672196078968	31.156	0.5897	31.156	30.879	31.469	0					30	13	3	0	0	0	0.024319	1	2055	2055		39.253	7.723	1	499150			30334	6422	20928	20968	34841	34841					0.020399819208023473
KDSLLVEVT	9	Unmodified	_KDSLLVEVT_					0	0	0			REV__SEC14L2|p.P386S|1|0.23|ENSG00000100003|chr22:30422351-30422351|C/T|missense_variant	REV__SEC14L2|p.P386S|1|0.23|ENSG00000100003|chr22:30422351-30422351|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75848388671875	2	502.28714	1002.55973	0.84637	0.00042512	0.025027	1.2571E-05	0.8714	0.00043769	502.28678833837614	37.299	0.51683	37.299	37.042	37.559	0					20	13	2	0	0	0	0.024209	1	3003	3003		31.53	8.0071	1	172980	+		30335	37470	20929	20969	34842	34842					0.05854903520571497
KDSLWKKL	8	Unmodified	_KDSLWKKL_					0	0	0		ENSG00000152214|ENST00000326695|RIT2	ENSG00000152214|ENST00000326695|RIT2	ENSG00000152214|ENST00000326695|RIT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.30572509765625	2	509.30821	1016.60187	-0.24459	-0.00012457	-4.4613	-0.0022722	-4.7059	-0.0023968	509.3058076210938	22.222	0.7157	22.02	21.614	22.33	-0.20199					23	11	3	0	0	0	0.97924	1	738	738		40.573	1.3198	1	412250			30336	6255	20930	20970	34843	34843					0.09422923719614573
KDSNYFEV	8	Unmodified	_KDSNYFEV_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.772216796875	2	501.232364	1000.45018	-0.8912	-0.0004467	2.6464	0.0013265	1.7552	0.00087978	501.2329089059317	55.583	0.22345	55.426	55.312	55.535	-0.15655					7	5	2	0	0	0	0.027866	1	5975	5975		16.473	0.83134	1	56076			30337	7737	20931	20971	34844	34844					-0.05003102098760337
KDSQRYKVD	9	Unmodified	_KDSQRYKVD_					0	0	0		ENST00000460477.1_1_7:45956706-45960430:-|nuORF;ENSG00000146674|ENST00000613132|IGFBP3;nc|ENSG00000146674|P17936-2|IGFBP3	ENST00000460477.1_1_7:45956706-45960430:-|nuORF	ENST00000460477.1_1_7:45956706-45960430:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2723999023438	2	569.796195	1137.57784	0.13364	7.615E-05	3.6916	0.0021035	3.8252	0.0021796	569.7986012508617	49.916	0.48245	49.636	49.32	49.802	-0.27977					20	12	2	0	0	0	0.024344	1	5028	5028		45.972	13.222	1	252540			30338	14657	20932	20972	34845	34845					0.01455038495282679
KDSRGSVALI	10	Unmodified	_KDSRGSVALI_					0	0	0		ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303955078125	2	523.303655	1044.59276	-0.30343	-0.00015878	-0.91784	-0.00048031	-1.2213	-0.00063909	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	1.1333	1	11175	11175		28.081	0.19925	1	11993000			30339	14796	20933	20973	34846	34846					0.07224530363305348
KDSRGSVALI	10	Unmodified	_KDSRGSVALI_					0	0	0		ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.303955078125	2	523.303655	1044.59276	-0.1291	-6.7557E-05	0.32065	0.00016779	0.19155	0.00010024	523.3035799805069	90.117	1.1937	90.1	89.795	90.989	-0.016716					66	28	4	0	0	0	0.96822	1	11376	11376		49.536	3.5638	1	1192700			30340	14796	20933	20973	34847	34847					0.07224530363305348
KDSRGSVALI	10	Unmodified	_KDSRGSVALI_					0	0	0		ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.303466796875	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	1.0236	2	11020	11020;11093		42.864	7.6636	1	11897000			30341	14796	20933	20973	34848;34849	34848					0.07224530363305348
KDSRGSVALI	10	Unmodified	_KDSRGSVALI_					0	0	0		ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3036499023438	2	523.303655	1044.59276	-0.97748	-0.00051152	1.0095	0.00052829	0.032046	1.677E-05	523.3040834261025	89.7	0.55897	89.537	89.215	89.774	-0.1626					23	12	2	0	0	0	1.0719	1	10960	10960		36.447	0	1	949050			30342	14796	20933	20973	34850	34850					0.07224530363305348
KDSRGSVALI	10	Unmodified	_KDSRGSVALI_					0	0	0		ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	1.1266	1	10291	10291		29.17	1.2878	1	3714800			30343	14796	20933	20973	34851	34851					0.07224530363305348
KDSRKGFR	8	Unmodified	_KDSRKGFR_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.2561340332031	2	497.283057	992.551562	-0.28885	-0.00014364	3.435	0.0017082	3.1461	0.0015645	497.28456566423	79.017	0.95715	78.844	78.568	79.526	-0.17225					49	22	5	0	0	0	0.027866	1	9844	9844		21.96	0	1	731370	+		30344	26149	20934	20974	34852	34852					0.054988141144804104
KDSSGHTKY	9	Unmodified	_KDSSGHTKY_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000473056.1_1_3:124207140-124210289:+|nuORF	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.26885986328125	2	511.748713	1021.48287	-1.1498	-0.00058841	0.80898	0.000414	-0.34081	-0.00017441	511.7489861306971	44.2	0.51147	44.055	43.814	44.326	-0.14471					23	14	2	0	0	0	0.024495	1	4163	4163		26.693	0	1	318060			30345	6785	20935	20975	34853	34853					-0.027008949759192546
KDSVLNGNAR	10	Unmodified	_KDSVLNGNAR_					0	0	0			REV__nc|ENSG00000173193|Q460N5-1|PARP14	REV__nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.826416015625	2	537.288537	1072.56252	-0.34349	-0.00018456	4.3793	0.002353	4.0359	0.0021684	537.2903122541161	42.954	0.54478	42.985	42.646	43.191	0.030827					20	14	2	0	0	0	0.03519	1	3908	3908		68.846	4.6389	1	330020	+		30346	26750	20936	20976	34854	34854					0.029141716980802812
KDSVLNGNAR	10	Unmodified	_KDSVLNGNAR_					0	0	0			REV__nc|ENSG00000173193|Q460N5-1|PARP14	REV__nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.288537	1072.56252	-0.85055	-0.00045699	-1.8391	-0.0009881	-2.6896	-0.0014451	537.2872999897735	43.031	0.40068	43.031	42.895	43.296	0	-0.0067701	-0.00054266	NaN	68.846	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157470	+		30347	26750	20936	20976							0.029141716980802812
KDSVLNGNAR	10	Unmodified	_KDSVLNGNAR_					0	0	0			REV__nc|ENSG00000173193|Q460N5-1|PARP14	REV__nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.288537	1072.56252	-0.80139	-0.00043058	-2.8751	-0.0015448	-3.6765	-0.0019754	537.2866102247049	43.238	0.39965	43.098	42.885	43.284	-0.13929	0.06013	-0.001656	NaN	68.846	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159460	+		30348	26750	20936	20976							0.029141716980802812
KDSVNMVTL	9	Unmodified	_KDSVNMVTL_					0	0	0		nc|ENSG00000176024|Q6PF04-2|ZNF613;ENSG00000176024|ENST00000293471|ZNF613	nc|ENSG00000176024|Q6PF04-2|ZNF613	nc|ENSG00000176024|Q6PF04-2|ZNF613	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2476806640625	2	503.765517	1005.51648	-0.56063	-0.00028243	-3.69	-0.0018589	-4.2507	-0.0021413	503.7633413473486	60.991	0.45241	60.777	60.643	61.096	-0.2134					23	11	3	0	0	0	0.024292	1	7012	7012		49.442	20.292	1	284520			30349	8605	20937	20977	34855	34855					0.013943904716484212
KDSVSEATR	9	Unmodified	_KDSVSEATR_					0	0	0		nc|ENSG00000114805|Q4KWH8-2|PLCH1;PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7558288574219	2	496.753995	991.493438	0.47901	0.00023795	3.7621	0.0018689	4.2411	0.0021068	496.7557130187472	67.551	0.93532	67.551	67.205	68.14	0					62	23	4	0	0	0	0.56934	1	8084	8084		54.776	1.8396	1	2739000			30350	3386	20938	20978	34856	34856					-0.0026491232147236587
KDSYLKDIL	9	Unmodified	_KDSYLKDIL_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.8099975585938	2	547.808239	1093.60193	-0.50558	-0.00027696	-0.94449	-0.0005174	-1.4501	-0.00079436	547.8074687853066	54.157	1.657	54.01	53.346	55.003	-0.14723					132	46	6	0	0	0	0.67687	1	5915	5915		47.657	0	1	15906000			30351	9199	20939	20979	34857	34857					0.05886878928936312
KDTAPKLRY	9	Unmodified	_KDTAPKLRY_					0	0	0			REV__nc|ENSG00000153113|P20810-4|CAST	REV__nc|ENSG00000153113|P20810-4|CAST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2806396484375	2	546.314023	1090.61349	-1.7294	-0.00094479	0.80375	0.0004391	-0.92564	-0.00050569	546.314002909087	40.546	0.29188	40.316	40.158	40.45	-0.23021					11	7	2	0	0	0	0.024418	1	3475	3475		45.972	1.5951	1	240840	+		30352	36794	20940	20980	34858	34858					0.07181120742939129
KDTAPKLRY	9	Unmodified	_KDTAPKLRY_					0	0	0			REV__nc|ENSG00000153113|P20810-4|CAST	REV__nc|ENSG00000153113|P20810-4|CAST	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.314023	1090.61349	-0.83203	-0.00045455	-0.088343	-4.8263E-05	-0.92038	-0.00050282	546.3139028272608	40.383	0.25394	40.233	40.04	40.294	-0.1497	-0.052546	-1.7825E-05	NaN	37.812	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262940	+		30353	36794	20940	20980							0.07181120742939129
KDTAPKLRY	9	Unmodified	_KDTAPKLRY_					0	0	0			REV__nc|ENSG00000153113|P20810-4|CAST	REV__nc|ENSG00000153113|P20810-4|CAST	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.314023	1090.61349	-0.3158	-0.00017253	-0.39214	-0.00021423	-0.70794	-0.00038676	546.3133842952096	40.532	0.21814	40.307	40.15	40.368	-0.225	0.021823	-0.00034976	NaN	37.812	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259400	+		30354	36794	20940	20980							0.07181120742939129
KDTARGQNL	9	Unmodified	_KDTARGQNL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.3205261230469	2	501.76998	1001.52541	1.7289	0.00086751	3.4664	0.0017394	5.1953	0.0026069	502.27181706126044	63.846	0.85929	63.892	63.294	64.153	0.045502					44	23	3	0	0	0	0.024292	1	7320	7320		58.782	3.2778	1	195020			30355	300	20941	20981	34859	34859					0.024705001523329884
KDTEGLDIFIR	11	Unmodified	_KDTEGLDIFIR_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.7637634277344	3	436.238232	1305.69287	-0.41116	-0.00017936	1.0556	0.00046048	0.64441	0.00028112	436.2387041787672	27.062	1.2286	26.819	26.41	27.638	-0.24217					49	28	2	0	0	0	0.024755	1	1483	1483		37.6	9.956	1	67371	+		30356	26342	20942	20982	34860	34860					0.05224722906405077
KDTEGLDIFIR	11	Unmodified	_KDTEGLDIFIR_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7637939453125	3	436.238232	1305.69287	-0.44407	-0.00019372	1.3157	0.00057395	0.87161	0.00038023	436.2388626246396	27.177	1.3852	27.008	26.224	27.61	-0.16816					53	32	3	0	0	0	0.024755	1	1433	1433		31.068	11.038	1	80638	+		30357	26342	20942	20982	34861	34861					0.05224722906405077
KDTEKLND	8	Unmodified	_KDTEKLND_					0	0	0			REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	REV__nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2866516113281	2	481.743096	961.47164	0.10504	5.0604E-05	-3.8798	-0.0018691	-3.7748	-0.0018185	481.73956357872237	63.52	1.3162	63.268	62.522	63.838	-0.25141					55	34	3	0	0	0	0.027866	1	7337	7337		60.972	0	1	426930	+		30358	22234	20943	20983	34862	34862					-0.010637170700533716
KDTFYKIE	8	Unmodified	_KDTFYKIE_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2579956054688	2	522.274032	1042.53351	-1.0112	-0.00052814	1.9076	0.00099628	0.89635	0.00046814	522.2750118715536	24.146	0.34624	24.146	23.951	24.297	0					11	6	2	0	0	0	0.027866	1	1031	1031		23.042	11.531	1	43578	+		30359	36232	20944	20984	34863	34863					0.013946343490715662
KDTGKDAVN	9	Unmodified	_KDTGKDAVN_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.26983642578125	2	474.243264	946.471974	0.073864	3.503E-05	-0.36546	-0.00017332	-0.2916	-0.00013829	474.2429902988341	26.645	0.49608	26.622	26.405	26.901	-0.023088					23	11	3	0	0	0	0.024209	1	1385	1385		39.253	2.0937	1	244770			30360	10934	20945	20985	34864	34864					-0.0034029735019203144
KDTGKDAVN	9	Unmodified	_KDTGKDAVN_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	474.243264	946.471974	0.082363	3.906E-05	-0.54007	-0.00025612	-0.4577	-0.00021706	474.2429088527978	26.311	0.627	26.392	26.131	26.758	0.081293	-0.16906	7.6416E-05	NaN	39.253	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275540			30361	10934	20945	20985							-0.0034029735019203144
KDTHHSKY	8	Unmodified	_KDTHHSKY_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|37|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|37|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|37|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2799377441406	2	508.251423	1014.48829	-0.69589	-0.00035369	0.55612	0.00028265	-0.13977	-7.104E-05	508.2519547999089	48.157	0.1041	48.157	48.105	48.209	0					4	2	2	0	0	0	0.027866	1	4886	4886		24.203	2.2429	1	55428			30362	17834	20946	20986	34865	34865					-0.01837171393447079
KDTIERAKN	9	Unmodified	_KDTIERAKN_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7494506835938	2	537.798737	1073.58292	-0.61761	-0.00033215	-3.1555	-0.001697	-3.7732	-0.0020292	537.796859263648	75.805	1.5432	75.63	75.389	76.933	-0.17548					48	37	2	0	0	0	0.024405	1	9023	9023		44.117	0	1	1264300			30363	1952	20947	20987	34866	34866					0.04907342357910238
KDTIIKPL	8	Unmodified	_KDTIIKPL_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2871398925781	2	464.29731	926.580068	0.23494	0.00010908	-0.71139	-0.0003303	-0.47645	-0.00022121	464.2968947693571	75.054	0.4235	74.879	74.689	75.113	-0.17548					15	9	2	0	0	0	0.027866	1	8882	8882		38.806	3.1879	1	63318		+	30364	489	20948	20988	34867	34867					0.1138411897103424
KDTKEKGRV	9	Unmodified	_KDTKEKGRV_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.808837890625	2	530.809105	1059.60366	0.093661	4.9716E-05	-0.082757	-4.3928E-05	0.010904	5.7879E-06	530.8089194939719	103.76	0.77039	103.63	103.36	104.13	-0.12724					33	19	3	0	0	0	0.89441	1	12900	12900		32.812	0	1	436130			30365	1047	20949	20989	34868	34868					0.0762393273755606
KDTKFPMH	8	Unmodified	_KDTKFPMH_					0	0	0		ENST00000496384.6_2_7:140426023-140426218:-|nuORF	ENST00000496384.6_2_7:140426023-140426218:-|nuORF	ENST00000496384.6_2_7:140426023-140426218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7665100097656	2	502.25512	1002.49569	0.54818	0.00027533	-4.2076	-0.0021133	-3.6594	-0.001838	502.2528794552346	58.671	0.65375	58.762	58.486	59.14	0.091217					24	17	2	0	0	0	0.027866	1	6549	6549		20.482	7.5226	1	1096000			30366	15567	20950	20990	34869	34869					-0.005461551173652879
KDTKPELKKI	10	Unmodified	_KDTKPELKKI_					0	0	0		MAP1A|p.H684Tfs*29|1|0.23|ENSG00000166963|chr15:43523517-43523518|-/A|frameshift_variant;MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant;ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	MAP1A|p.H684Tfs*29|1|0.23|ENSG00000166963|chr15:43523517-43523518|-/A|frameshift_variant	MAP1A|p.H684Tfs*29|1|0.23|ENSG00000166963|chr15:43523517-43523518|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.584228515625	3	400.583451	1198.72852	0.15975	6.3992E-05	1.6262	0.00065144	1.786	0.00071543	400.58406229107305	25.463	0.75363	25.236	24.975	25.729	-0.22683					34	17	2	0	0	0	0.67616	1	1219	1219		68.846	1.8842	1	1225100			30367	7634	20951	20991	34870	34870					0.13710805154096306
KDTKSKVTL	9	Unmodified	_KDTKSKVTL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.78240966796875	2	510.308406	1018.60226	-0.41667	-0.00021263	-1.7394	-0.00088761	-2.156	-0.0011002	510.3065390196336	43.962	0.18421	43.998	43.888	44.072	0.036903					7	4	2	0	0	0	0.024374	1	4099	4099		32.812	0	1	47303			30368	855	20952	20992	34871	34871					0.09370298648809694
KDTLKKGPS	9	Unmodified	_KDTLKKGPS_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;SLTM|p.E514Kfs*8|1|0.11|ENSG00000137776|chr15:58893930-58893930|T/-|frameshift_variant;ENST00000480144.5_1_15:59191618-59225764:-|nuORF	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2879638671875	2	487.287474	972.560395	0.19822	9.6588E-05	-0.33367	-0.00016259	-0.13546	-6.6006E-05	487.28714184782865	20.814	0.49199	20.882	20.661	21.153	0.068901					19	9	3	0	0	0	0.77768	1	541	541		40.778	1.972	1	164440			30369	5153	20953	20993	34872	34872					0.07301742960282809
KDTLKKGPS	9	Unmodified	_KDTLKKGPS_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;SLTM|p.E514Kfs*8|1|0.11|ENSG00000137776|chr15:58893930-58893930|T/-|frameshift_variant;ENST00000480144.5_1_15:59191618-59225764:-|nuORF	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.287474	972.560395	-1.1094	-0.00054059	0.89858	0.00043786	-0.21081	-0.00010272	487.2878084062365	20.84	0.58649	20.84	20.609	21.195	0	-0.024677	0.00045964	NaN	40.778	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162290			30370	5153	20953	20993							0.07301742960282809
KDTLKKGPS	9	Unmodified	_KDTLKKGPS_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;SLTM|p.E514Kfs*8|1|0.11|ENSG00000137776|chr15:58893930-58893930|T/-|frameshift_variant;ENST00000480144.5_1_15:59191618-59225764:-|nuORF	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.287474	972.560395	-0.4969	-0.00024213	0.28903	0.00014084	-0.20786	-0.00010129	487.28748930142154	20.962	0.48246	20.872	20.675	21.158	-0.090094	0.0073347	-0.0001344	NaN	40.778	24	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191640			30371	5153	20953	20993							0.07301742960282809
KDTNLIVVV	9	Unmodified	_KDTNLIVVV_					0	0	0		HS3ST3A1|p.K237N|1|0.06|ENSG00000153976|chr17:13496707-13496707|C/A|missense_variant	HS3ST3A1|p.K237N|1|0.06|ENSG00000153976|chr17:13496707-13496707|C/A|missense_variant	HS3ST3A1|p.K237N|1|0.06|ENSG00000153976|chr17:13496707-13496707|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2919006347656	2	500.8055	999.596446	-0.15469	-7.7472E-05	-0.53165	-0.00026625	-0.68634	-0.00034372	500.80525979709284	55.83	0.96757	55.674	55.027	55.995	-0.15601					67	26	3	0	0	0	0.024405	1	6176	6176		35.618	0	1	1817100			30372	17747	20954	20994	34873	34873					0.09663200137129024
KDTPDSHLT	9	Unmodified	_KDTPDSHLT_					0	0	0		ENST00000569691.1_1_15:55710482-55710578:+|nuORF	ENST00000569691.1_1_15:55710482-55710578:+|nuORF	ENST00000569691.1_1_15:55710482-55710578:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7696228027344	2	507.248546	1012.48254	0.65818	0.00033386	-0.62664	-0.00031786	0.031542	1.6E-05	507.24817423673704	36.956	0.78942	36.956	36.406	37.195	0					27	20	2	0	0	0	0.024381	1	2898	2898		29.15	0	1	368360			30373	17007	20955	20995	34874	34874					-0.023203146957712306
KDTQGVILV	9	Unmodified	_KDTQGVILV_					0	0	0		nc|ENSG00000115137|Q9NZQ0-3|DNAJC27;ENSG00000115137|ENST00000264711|DNAJC27	nc|ENSG00000115137|Q9NZQ0-3|DNAJC27	nc|ENSG00000115137|Q9NZQ0-3|DNAJC27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7435302734375	2	486.78985	971.565146	-0.46632	-0.000227	-2.1795	-0.0010609	-2.6458	-0.0012879	486.788797535904	41.739	0.18479	41.762	41.67	41.854	0.023006					7	4	2	0	0	0	0.023007	1	3736	3736		56.721	0	1	126140			30374	3411	20956	20996	34875	34875					0.07822627103053037
KDTQGVILV	9	Unmodified	_KDTQGVILV_					0	0	0		nc|ENSG00000115137|Q9NZQ0-3|DNAJC27;ENSG00000115137|ENST00000264711|DNAJC27	nc|ENSG00000115137|Q9NZQ0-3|DNAJC27	nc|ENSG00000115137|Q9NZQ0-3|DNAJC27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7689208984375	2	486.78985	971.565146	0.66839	0.00032537	0.59804	0.00029112	1.2664	0.00061649	486.7900365745286	67.716	0.50758	67.461	67.153	67.661	-0.25516					17	11	2	0	0	0	0.024457	1	7810	7810		21.96	0	1	216150			30375	3411	20956	20996	34876	34876					0.07822627103053037
KDTSSLLR	8	Unmodified	_KDTSSLLR_					0	0	0		nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1;ENST00000502531.1_1_5:179023563-179032937:+|nuORF;ENST00000393448.6_1_5:179018652-179028988:+|nuORF	nc|ENSG00000176783|Q96T51-2|RUFY1	nc|ENSG00000176783|Q96T51-2|RUFY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2709045410156	2	460.263999	918.513445	-0.74162	-0.00034134	0.98039	0.00045124	0.23877	0.0001099	460.26445941541704	43.741	0.45849	43.596	43.425	43.883	-0.14471					26	12	3	0	0	0	0.027866	1	4078	4078		10.265	4.7074	1	718110			30376	8669	20957	20997	34877	34877					0.05092883409145088
KDTTGESASY	10	Unmodified	_KDTTGESASY_					0	0	0			REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2988891601562	2	529.735468	1057.45638	-1.213	-0.00064257	2.3927	0.0012675	1.1797	0.00062493	529.7366760665876	38.503	0.54255	38.324	38.136	38.678	-0.17929					24	14	2	0	0	0	0.03519	1	3215	3215		23.523	0	1	491740	+		30377	37098	20958	20998	34878	34878					-0.07004628657887224
KDTVDLAR	8	Unmodified	_KDTVDLAR_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.27130126953125	2	459.256174	916.497795	-0.48716	-0.00022373	0.91393	0.00041973	0.42677	0.00019599	459.25658602154056	43.348	0.76256	43.348	42.895	43.658	0					45	20	4	0	0	0	0.027866	1	4073	4073		29.15	11.785	1	1159700	+		30378	19378	20959	20999	34879	34879					0.036205968920739906
KDTVDLAR	8	Unmodified	_KDTVDLAR_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2708740234375	2	459.256174	916.497795	0.64022	0.00029402	-0.41992	-0.00019285	0.2203	0.00010117	459.2559012413282	43.408	0.79803	43.439	42.902	43.7	0.030823					50	21	4	0	0	0	0.027866	1	4021	4021		19.997	0.89325	1	1129400	+		30379	19378	20959	20999	34880	34880					0.036205968920739906
KDTVDLAR	8	Unmodified	_KDTVDLAR_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	459.256174	916.497795	-0.25619	-0.00011766	-0.029254	-1.3435E-05	-0.28544	-0.00013109	459.2560703615039	43.521	0.61895	43.408	43.034	43.653	-0.11253	0.12168	-0.00047321	NaN	15.642	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222030	+		30380	19378	20959	20999							0.036205968920739906
KDTVDLAR	8	Unmodified	_KDTVDLAR_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	459.256174	916.497795	-0.70898	-0.0003256	-5.0305	-0.0023103	-5.7395	-0.0026359	459.25240757962854	43.369	0.24821	43.143	43.061	43.31	-0.22597	-0.14379	-0.0050669	NaN	15.642	9	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77127	+		30381	19378	20959	20999							0.036205968920739906
KDTVLKAFF	9	Unmodified	_KDTVLKAFF_					0	0	0			REV__ENSG00000183690|ENST00000420999|EFHC2	REV__ENSG00000183690|ENST00000420999|EFHC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7609252929688	2	534.808042	1067.60153	0.2257	0.0001207	2.4303	0.0012997	2.656	0.0014204	534.8094711208	77.95	0.67447	77.707	77.532	78.207	-0.24232					23	15	2	0	0	0	0.024447	1	9275	9275		40.778	5.1599	1	109820	+		30382	27597	20960	21000	34881	34881					0.07043503999739187
KDTVLKAFF	9	Unmodified	_KDTVLKAFF_					0	0	0			REV__ENSG00000183690|ENST00000420999|EFHC2	REV__ENSG00000183690|ENST00000420999|EFHC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.808042	1067.60153	-0.5374	-0.0002874	2.5186	0.001347	1.9812	0.0010596	534.80922160456	77.901	0.28867	77.901	77.712	78.001	0	0.10644	-0.00027831	NaN	56.721	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66212	+		30383	27597	20960	21000							0.07043503999739187
KDTVLKAFF	9	Unmodified	_KDTVLKAFF_					0	0	0			REV__ENSG00000183690|ENST00000420999|EFHC2	REV__ENSG00000183690|ENST00000420999|EFHC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.808042	1067.60153	-0.90209	-0.00048244	3.8693	0.0020693	2.9672	0.0015869	534.8099907601527	77.876	0.41523	77.892	77.78	78.195	0.015907	0.097245	0.0011664	NaN	56.721	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67155	+		30384	27597	20960	21000							0.07043503999739187
KDTVTVKISV	10	Unmodified	_KDTVTVKISV_					0	0	0		ENSG00000140937|ENST00000268603|CDH11;nc|ENSG00000140937|P55287-2|CDH11	ENSG00000140937|ENST00000268603|CDH11	ENSG00000140937|ENST00000268603|CDH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2457885742188	2	545.329339	1088.64412	-0.83034	-0.00045281	1.3832	0.0007543	0.55286	0.00030149	545.3294261196324	40.518	0.43991	40.369	40.258	40.698	-0.1497					23	11	3	0	0	0	0.03519	1	3499	3499		36.318	18.953	1	269770			30385	5451	20961	21001	34882	34882					0.10334854337338584
KDTVTVKISV	10	Unmodified	_KDTVTVKISV_					0	0	0		ENSG00000140937|ENST00000268603|CDH11;nc|ENSG00000140937|P55287-2|CDH11	ENSG00000140937|ENST00000268603|CDH11	ENSG00000140937|ENST00000268603|CDH11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.329339	1088.64412	-0.37109	-0.00020237	2.7957	0.0015246	2.4246	0.0013222	545.329809530985	40.753	0.4381	40.528	40.332	40.77	-0.225	0.043492	0.00017421	NaN	36.318	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331430			30386	5451	20961	21001							0.10334854337338584
KDTVTVKISV	10	Unmodified	_KDTVTVKISV_					0	0	0		ENSG00000140937|ENST00000268603|CDH11;nc|ENSG00000140937|P55287-2|CDH11	ENSG00000140937|ENST00000268603|CDH11	ENSG00000140937|ENST00000268603|CDH11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.329339	1088.64412	-1.8076	-0.00098574	3.3801	0.0018433	1.5725	0.00085754	545.3304554879335	40.786	0.39273	40.556	40.378	40.771	-0.23029	0.071976	0.00081163	NaN	36.318	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328120			30387	5451	20961	21001							0.10334854337338584
KDTVTVLAL	9	Unmodified	_KDTVTVLAL_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2926330566406	2	480.292225	958.569897	-0.0088503	-4.2508E-06	0.23448	0.00011262	0.22563	0.00010837	480.29218125534146	86.732	0.72034	86.753	86.417	87.137	0.021255					41	16	3	0	0	0	0.85329	1	10838	10838		35.618	2.8059	1	779620	+		30388	28639	20962	21002	34883	34883					0.08895511245793841
KDTWTPKT	8	Unmodified	_KDTWTPKT_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79254150390625	2	488.758549	975.502546	-1.1409	-0.00055761	-3.1495	-0.0015393	-4.2904	-0.0020969	488.7568164344504	36.174	0.58643	36.132	35.763	36.349	-0.042454					25	16	2	0	0	0	0.027866	1	2803	2803		47.657	0	1	228560			30389	10973	20963	21003	34884	34884					0.013814810348435458
KDTWVLED	8	Unmodified	_KDTWVLED_					0	0	0		ENST00000504520.6_1_4:83816924-83819198:-|nuORF	ENST00000504520.6_1_4:83816924-83819198:-|nuORF	ENST00000504520.6_1_4:83816924-83819198:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2879638671875	2	503.248015	1004.48148	0.46686	0.00023494	3.2733	0.0016473	3.7402	0.0018822	503.2496858998229	71.658	0.49982	71.369	71.113	71.613	-0.28858					14	12	2	0	0	0	0.027866	1	8645	8645		71.296	2.811	1	101350			30390	15716	20964	21004	34885	34885					-0.02058529064686354
KDTYTMKEDLD	11	Unmodified	_KDTYTMKEDLD_					0	0	0		nc|ENSG00000135679|Q00987-5|MDM2	nc|ENSG00000135679|Q00987-5|MDM2	nc|ENSG00000135679|Q00987-5|MDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.3004455566406	3	453.542992	1357.60715	-0.83653	-0.0003794	-3.479	-0.0015779	-4.3155	-0.0019573	453.5406780233331	27.876	0.24166	27.707	27.487	27.729	-0.16816					8	5	2	0	0	0	0.024785	1	1560	1560		9.7451	0	1	38427			30391	18298	20965	21005	34886	34886					-0.057352300613956686
KDVALHLPS	9	Unmodified	_KDVALHLPS_					0	0	0			REV__ENSG00000145780|ENST00000274457|FEM1C	REV__ENSG00000145780|ENST00000274457|FEM1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.26385498046875	2	490.282192	978.549831	-1.0511	-0.00051531	-1.2342	-0.00060511	-2.2853	-0.0011204	490.2811668574089	50.849	0.55184	50.935	50.749	51.301	0.085606					18	14	2	0	0	0	0.024374	1	5273	5273		40.778	0	1	121310	+		30392	24432	20966	21006	34887	34887					0.05969760305856653
KDVAPVEKT	9	Unmodified	_KDVAPVEKT_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7508544921875	2	493.779482	985.544411	-0.22822	-0.00011269	0.52451	0.00025899	0.29629	0.0001463	493.77936003456045	45.117	0.411	45.16	44.966	45.377	0.043877					30	11	3	0	0	0	0.024527	1	4330	4330		24.519	13.008	1	928990			30393	2338	20967	21007	34888	34888					0.05106036723384477
KDVARGRLL	9	Unmodified	_KDVARGRLL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7901611328125	2	514.322183	1026.62981	0.42781	0.00022003	1.407	0.00072367	1.8348	0.0009437	514.3231598981173	41.008	0.70491	40.885	40.725	41.43	-0.12317					38	19	4	0	0	0	0.024438	1	3717	3717		29.17	8.2231	1	2229300			30394	9849	20968	21008	34889	34889					0.11756246699701478
KDVARGRLL	9	Unmodified	_KDVARGRLL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.322183	1026.62981	-0.10179	-5.2353E-05	1.5743	0.00080972	1.4726	0.00075737	514.3228968079527	40.796	0.49645	40.796	40.623	41.119	0	-0.10508	-0.00015069	NaN	16.717	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2066000			30395	9849	20968	21008							0.11756246699701478
KDVASVRVAV	10	Unmodified	_KDVASVRVAV_					0	0	0		ENSG00000139880|ENST00000487137|CDH24;nc|ENSG00000139880|Q86UP0|CDH24	ENSG00000139880|ENST00000487137|CDH24	ENSG00000139880|ENST00000487137|CDH24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	522.314023	1042.61349	1.2275	0.00064114	-1.6264	-0.00084947	-0.39886	-0.00020833	522.313160266522	20.023	0.6782	19.823	19.603	20.282	-0.2001					25	13	4	0	0	0	0.03519	1	493	493		25.574	0	1	125490			30396	5373	20969	21009	34890	34890					0.0938912074293512
KDVDPRLYTK	10	Unmodified	_KDVDPRLYTK_					0	0	0			REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	REV__ENST00000561671.5_1_16:30017707-30020344:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.7532958984375	3	412.231189	1233.67174	-0.4401	-0.00018142	-1.6059	-0.00066202	-2.046	-0.00084344	412.2302277197506	22.804	0.45921	22.618	22.325	22.784	-0.18539					16	9	2	0	0	0	0.03519	1	799	799		5.6988	0	1	65140	+		30397	24705	20970	21010	34891	34891					0.06424757597551434
KDVELRIM	8	Unmodified	_KDVELRIM_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.T1556Nfs*3|1|0.74|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30303955078125	2	502.283877	1002.5532	-0.59141	-0.00029706	-0.52587	-0.00026413	-1.1173	-0.00056119	502.28338376587755	25.924	0.4139	25.688	25.467	25.88	-0.23603					20	9	3	0	0	0	0.027866	1	1266	1266		30.504	8.5438	1	385380			30398	4847	20971	21011	34892	34892					0.052026870882059484
KDVEMVRLL	9	Oxidation (M)	_KDVEM(Oxidation (M))VRLL_		KDVEM(1)VRLL		KDVEM(74)VRLL	0	0	1		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8140869140625	2	559.815541	1117.61653	0.27362	0.00015318	-0.36085	-0.00020201	-0.087227	-4.8831E-05	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.31037	1	9779	9779		74.255	12.148	1	35108000			30399	2605	20972	21012	34893	34893		100			0.06242627805431766
KDVFEELLS	9	Unmodified	_KDVFEELLS_					0	0	0		ENST00000606496.1_1_6:34664762-34665079:+|nuORF	ENST00000606496.1_1_6:34664762-34665079:+|nuORF	ENST00000606496.1_1_6:34664762-34665079:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2846069335938	2	540.284597	1078.55464	-0.32206	-0.00017401	0.64917	0.00035073	0.3271	0.00017673	540.284830760412	89.116	0.83817	89.116	88.767	89.605	0					46	19	3	0	0	0	0.48817	1	11232	11232		60.118	3.3972	1	1374900			30400	17565	20973	21013	34894	34894					0.01850599657973362
KDVFHNHGI	9	Unmodified	_KDVFHNHGI_					0	0	0		ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.790283203125	2	533.775065	1065.53558	-0.56623	-0.00030224	4.4857	0.0023944	3.9195	0.0020921	533.7779300029264	24.134	0.29997	23.959	23.829	24.129	-0.17484					10	6	2	0	0	0	0.024436	1	1027	1027		16.473	0	1	134350			30401	8033	20974	21014	34895	34895					0.005431078775700371
KDVFTVDQVM	10	Oxidation (M)	_KDVFTVDQVM(Oxidation (M))_		KDVFTVDQVM(1)		KDVFTVDQVM(69)	0	0	1			REV__nc|ENSG00000100473|O43405-2|COCH	REV__nc|ENSG00000100473|O43405-2|COCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.2914428710938	2	599.294639	1196.57472	-0.39538	-0.00023695	-3.6956	-0.0022147	-4.091	-0.0024517	599.2923724843762	46.837	1.2331	46.74	46.152	47.385	-0.096653					87	33	5	0	0	0	0.67616	1	4562	4562		68.846	22.894	1	4722400	+		30402	21122	20975	21015	34896	34896		647			-0.015699726737466335
KDVFTVDQVM	10	Oxidation (M)	_KDVFTVDQVM(Oxidation (M))_					0	0	1			REV__nc|ENSG00000100473|O43405-2|COCH	REV__nc|ENSG00000100473|O43405-2|COCH	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	599.294639	1196.57472	-0.40766	-0.00024431	-3.5556	-0.0021308	-3.9633	-0.0023752	599.292451375102	47.157	1.263	46.888	46.304	47.567	-0.26939	0.071237	-0.00027948	NaN	68.846	100	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4543500	+		30403	21122	20975	21015				647			-0.015699726737466335
KDVFTVDQVM	10	Oxidation (M)	_KDVFTVDQVM(Oxidation (M))_					0	0	1			REV__nc|ENSG00000100473|O43405-2|COCH	REV__nc|ENSG00000100473|O43405-2|COCH	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	599.294639	1196.57472	-0.53348	-0.00031971	-3.4848	-0.0020884	-4.0182	-0.0024081	599.2924997439201	46.956	1.1799	46.762	46.202	47.382	-0.19387	-0.054834	-0.00019458	NaN	68.846	92	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4832000	+		30404	21122	20975	21015				647			-0.015699726737466335
KDVGSLKV	8	Unmodified	_KDVGSLKV_					0	0	0		ENSG00000163499|ENST00000295728|CRYBA2	ENSG00000163499|ENST00000295728|CRYBA2	ENSG00000163499|ENST00000295728|CRYBA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.25811767578125	2	423.258185	844.501818	-0.27339	-0.00011571	0.36242	0.0001534	0.08903	3.7683E-05	423.2582263060112	27.077	1.0641	26.908	26.506	27.57	-0.16816					71	24	5	0	0	0	0.56592	1	1469	1469		79.451	2.6769	1	3024700			30405	7089	20976	21016	34897	34897					0.07334686385797795
KDVIEEKTL	9	Unmodified	_KDVIEEKTL_					0	0	0			REV__nc|ENSG00000128595|O43852-9|CALU;REV__nc|ENSG00000128595|O43852-2|CALU	REV__nc|ENSG00000128595|O43852-2|CALU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.27734375	2	537.805697	1073.59684	-1.2697	-0.00068285	0.86659	0.00046605	-0.40311	-0.00021679	537.8058439085354	44.606	0.93258	44.606	44.215	45.147	0					60	26	3	0	0	0	0.024477	1	4204	4204		35.618	1.4457	1	2753900	+		30406	22998;36646	20977	21017	34898	34898					0.06298575066330159
KDVIGAVDSKV	11	Unmodified	_KDVIGAVDSKV_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8257446289062	2	565.824421	1129.63429	0.49993	0.00028287	3.2182	0.0018209	3.7181	0.0021038	565.8259799274466	101.01	0.70289	100.88	100.66	101.36	-0.13156					37	16	4	0	0	0	0.61955	1	12534	12534		68.626	1.6639	1	215940			30407	8077	20978	21018	34899	34899					0.07465666331927423
KDVIVHPLP	9	Unmodified	_KDVIVHPLP_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7665100097656	2	509.30821	1016.60187	-0.12944	-6.5925E-05	2.0878	0.0010634	1.9584	0.00099743	509.30960758058785	65.449	0.35153	65.487	65.355	65.706	0.037376					16	9	3	0	0	0	0.024294	1	7700	7700		55.504	11.387	1	109940			30408	1397	20979	21019	34900	34900					0.09422923719591836
KDVKKNCY	8	Carbamidomethyl (C)	_KDVKKNC(Carbamidomethyl (C))Y_	KDVKKNC(1)Y		KDVKKNC(110)Y		0	1	0			REV__ENST00000379887.8_2_15:72875657-72875942:+|nuORF	REV__ENST00000379887.8_2_15:72875657-72875942:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.7693481445312	2	527.771134	1053.52771	-0.99377	-0.00052449	-2.2754	-0.0012009	-3.2691	-0.0017254	527.7699174029117	53.562	1.3293	53.414	52.758	54.088	-0.14723					104	36	4	0	0	0	0.30053	1	5758	5758		111.65	18.453	1	8004600	+		30409	31450	20980	21020	34901	34901	415				0.0030921256577585154
KDVKRHIT	8	Unmodified	_KDVKRHIT_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000468571.1_7:111617053-111644151:-|nuORF;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.735107421875	2	498.801083	995.587613	-0.089817	-4.4801E-05	0.033641	1.678E-05	-0.056176	-2.8021E-05	498.8007118244439	33.116	0.24271	32.916	32.813	33.056	-0.20019					8	5	2	0	0	0	0.027866	1	2319	2319		32.812	17.171	1	42176			30410	4290;15100	20981	21021	34902	34902					0.08964271291313253
KDVKVALR	8	Unmodified	_KDVKVALR_					0	0	0		ENSG00000170953|ENST00000306842|OR8B12;nc|ENSG00000284609|Q8NGG8|OR8B3;nc|ENSG00000284680|Q96RD0|OR8B2	ENSG00000170953|ENST00000306842|OR8B12;nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284609|Q8NGG8|OR8B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7640380859375	2	464.800552	927.58655	-0.3722	-0.000173	0.39437	0.00018331	0.022175	1.0307E-05	464.8002411381164	22.041	0.71454	21.85	21.516	22.23	-0.19072					17	14	2	0	0	0	0.027866	1	708	708		45.952	18.07	1	32249			30411	18808;8097	20982	21022	34903	34903					0.1198605692242154
KDVLERVKWM	10	Unmodified	_KDVLERVKWM_					0	0	0			REV__CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	REV__CLINT1|p.V404Efs*9|1|0.05|ENSG00000113282|chr5:157791872-157791873|-/CT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.78009033203125	3	435.244552	1302.71183	-1.0589	-0.0004609	4.0339	0.0017557	2.9749	0.0012948	435.24624883649165	38.609	0.61066	38.429	38.136	38.746	-0.17929					45	16	4	0	0	0	0.03519	1	3170	3170		9.6461	2.6274	1	482520	+		30412	19498	20983	21023	34904	34904					0.07257980996496372
KDVLTGQEF	9	Unmodified	_KDVLTGQEF_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.768798828125	2	518.769114	1035.52368	-0.67367	-0.00034948	0.61381	0.00031843	-0.059856	-3.1052E-05	518.7693249685898	65.865	0.61686	65.651	65.379	65.996	-0.21327					47	14	4	0	0	0	0.26413	1	7565	7565		80.455	8.5771	1	6035600			30413	3414	20984	21024	34905	34905					0.007334463437246086
KDVNPGGK	8	Unmodified	_KDVNPGGK_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2;SRRM2|p.A921Efs*27|1|0.11|ENSG00000167978|chr16:2763289-2763290|-/AACAAAACTGGAGGCTTCAAACTTC|frameshift_variant;ENST00000575701.4_1_16:2806365-2807581:+|nuORF	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.5790710449219	2	407.72451	813.434466	0.5768	0.00023517	0.2566	0.00010462	0.8334	0.0003398	407.72444788937725	34.75	0.64863	34.75	34.332	34.981	0					27	16	2	0	0	0	0.027866	1	2558	2558		21.96	5.4867	1	202790			30414	7760	20985	21025	34906	34906					0.02028656174866228
KDVNRRRKRKK	11	Unmodified	_KDVNRRRKRKK_					0	0	0			REV__ENSG00000080503|ENST00000349721|SMARCA2	REV__ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2926940917969	3	495.318325	1482.93315	0.43701	0.00021646	3.7905	0.0018775	4.2275	0.002094	495.32008507724214	68.456	0.31841	68.213	68.072	68.39	-0.24277					9	7	2	0	0	0	0.024834	1	7935	7935		12.957	10.269	1	119240	+		30415	20655	20986	21026	34907	34907					0.21099601807804902
KDVNVENVN	9	Unmodified	_KDVNVENVN_					0	0	0		ENSG00000138823|ENST00000265517|MTTP;nc|ENSG00000138823|P55157-2|MTTP	ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2825317382812	2	515.76182	1029.50909	-0.50016	-0.00025796	3.6019	0.0018577	3.1017	0.0015997	515.7637890995123	65.561	0.55489	65.288	65.126	65.681	-0.27282					22	15	2	0	0	0	0.024292	1	7787	7787		25.574	0	1	385160			30416	5292	20987	21027	34908	34908					-0.004486258044153146
KDVPPVLV	8	Unmodified	_KDVPPVLV_					0	0	0			REV__ENSG00000185156|ENST00000329805|MFSD6L	REV__ENSG00000185156|ENST00000329805|MFSD6L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.2364501953125	2	433.770929	865.527304	0.4682	0.00020309	2.8687	0.0012444	3.3369	0.0014474	433.7719868185217	72.235	2.4257	71.973	70.908	73.334	-0.26199					80	58	2	0	0	0	0.027866	1	8552	8552		17.365	0	1	947330	+		30417	27739	20988	21028	34909	34909					0.08916160908233906
KDVQRCATL	9	Unmodified	_KDVQRCATL_					0	0	0		nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B;UNC45B|p.A554Cfs*7|1|0.38|ENSG00000141161|chr17:35170221-35170222|-/C|frameshift_variant	nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2952880859375	2	517.276583	1032.53861	-0.1938	-0.00010025	-3.0422	-0.0015737	-3.236	-0.0016739	517.2748581919008	37.398	0.62769	37.189	36.806	37.434	-0.2092					21	15	2	0	0	0	0.024389	1	2941	2941		42.864	13.715	1	115420			30418	5474	20989	21029	34910	34910					0.02364614940051979
KDVREAPVP	9	Unmodified	_KDVREAPVP_					0	0	0		ENSG00000101220|ENST00000379772|ADISSP;nc|ENSG00000101220|Q9GZN8-2|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7565612792969	2	505.785099	1009.55564	-1.1456	-0.00057943	0.78388	0.00039648	-0.36173	-0.00018296	505.78543959437116	38.376	0.90719	38.376	38.134	39.041	0					57	24	4	0	0	0	0.024397	1	3201	3201		39.253	0	1	2963500			30419	2297	20990	21030	34911	34911					0.05124858817521272
KDVRQISKT	9	Unmodified	_KDVRQISKT_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7540283203125	2	537.81693	1073.61931	-1.0384	-0.00055845	0.63898	0.00034365	-0.39939	-0.0002148	537.8172355887477	25.599	0.38152	25.428	25.241	25.623	-0.17151					19	8	3	0	0	0	0.024427	1	1198	1198		34.173	0	1	159550	+		30420	23462	20991	21031	34912	34912					0.08544219254622476
KDVSAESPL	9	Unmodified	_KDVSAESPL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7760009765625	2	473.248015	944.481476	0.9463	0.00044784	-0.83865	-0.00039689	0.10765	5.0944E-05	473.2473888209383	98.726	0.51556	98.722	98.472	98.988	-0.0038834					15	11	2	0	0	0	0.024209	1	12529	12529		66.429	32.914	1	33959	+		30421	20082	20992	21032	34913	34913					0.007014709353256876
KDVSLILL	8	Unmodified	_KDVSLILL_					0	0	0			REV__ENST00000442544.6_2_18:49866936-49867092:+|nuORF	REV__ENST00000442544.6_2_18:49866936-49867092:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.76116943359375	2	450.791861	899.569169	-0.56446	-0.00025445	3.9177	0.0017661	3.3533	0.0015116	450.79374012857437	39.203	0.22327	38.98	38.926	39.149	-0.22311					8	5	2	0	0	0	0.027866	1	3321	3321		37.159	0	1	170110	+		30422	32564	20993	21033	34914	34914					0.11536716596765473
KDVTCDLIV	9	Unmodified	_KDVTCDLIV_					0	0	0		ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	ENSG00000117009|ENST00000366559|KMO	ENSG00000117009|ENST00000366559|KMO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.26666259765625	2	503.267893	1004.52123	0.6203	0.00031218	-0.93378	-0.00046994	-0.31348	-0.00015776	503.2671101528774	71.287	1.5544	71.287	70.241	71.795	0					102	38	3	0	0	0	0.87448	1	8658	8658		34.173	1.3601	1	1599600			30423	3603	20994	21034	34915	34915					0.01915274614395912
KDVTQPRNY	9	Unmodified	_KDVTQPRNY_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.75390625	2	560.790912	1119.56727	-1.283	-0.00071952	0.85275	0.00047821	-0.43029	-0.00024131	560.7914169025217	55.969	0.66793	55.754	55.45	56.118	-0.21551					26	17	2	0	0	0	0.024288	1	5988	5988		36.447	0.82846	1	131860	+		30424	25460	20995	21035	34916	34916					0.012270558408545185
KDVYIVQDL	9	Unmodified	_KDVYIVQDL_					0	0	0		ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	ENSG00000100030|ENST00000215832|MAPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8002319335938	2	546.800414	1091.58628	-1.9269	-0.0010536	2.3552	0.0012878	0.42837	0.00023423	546.8014269164787	62.647	0.26468	62.408	62.35	62.615	-0.23926					12	7	2	0	0	0	0.51687	1	7274	7274		58.23	1.5089	1	879040			30425	2120	20996	21036	34917	34917					0.04414592411899321
KDWIWLLKV	9	Unmodified	_KDWIWLLKV_					0	0	0			REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.894775390625	3	400.909498	1199.70667	1.1196	0.00044888	-1.6016	-0.00064211	-0.48198	-0.00019323	400.90896086094796	26.494	0.16664	26.494	26.365	26.531	0					5	3	2	0	0	0	0.024017	1	1350	1350		32.751	2.1817	1	19320	+		30426	27271	20997	21037	34918	34918					0.11480045196162791
KDWKKRFI	8	Unmodified	_KDWKKRFI_					0	0	0		ENSG00000170801|ENST00000307358|HTRA3	ENSG00000170801|ENST00000307358|HTRA3	ENSG00000170801|ENST00000307358|HTRA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3134765625	2	560.834926	1119.6553	-0.008143	-4.5669E-06	4.3115	0.0024181	4.3034	0.0024135	561.3388300456627	92.983	0.21474	92.861	92.712	92.927	-0.12215					6	4	2	0	0	0	0.027866	1	11425	11425		30.504	6.3009	1	26132			30427	8080	20998	21038	34919	34919					0.10025721222132233
KDWLAPNRS	9	Unmodified	_KDWLAPNRS_					0	0	0			REV__ENST00000530703.1_1_19:1040142-1041440:+|nuORF	REV__ENST00000530703.1_1_19:1040142-1041440:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.31884765625	2	543.788173	1085.56179	-0.0155	-8.4289E-06	-3.5767	-0.001945	-3.5922	-0.0019534	543.7863054039169	58.652	0.65173	58.652	58.418	59.07	0					24	17	2	0	0	0	0.024427	1	6694	6694		34.173	0	1	453070	+		30428	34461	20999	21039	34920	34920					0.02243377049035189
KDWPAQYCE	9	Unmodified	_KDWPAQYCE_					0	0	0		ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.2428588867188	2	570.244949	1138.47534	0.16238	9.2596E-05	-3.5184	-0.0020064	-3.3561	-0.0019138	570.2429350099487	77.681	0.84901	77.419	77.099	77.948	-0.26202					55	19	4	0	0	0	0.96906	1	9243	9243		26.693	2.1737	1	1521000			30429	9410	21000	21040	34921	34921					-0.08835370567840073
KDWPLIII	8	Unmodified	_KDWPLIII_					0	0	0		nc|ENSG809|P63128|ERVK-9_pol;nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG855|P10266|ERVK-10_pol	nc|ENSG809|P63128|ERVK-9_pol;nc|ENSG851|Q9QC07|ERVK-18_pol	nc|ENSG809|P63128|ERVK-9_pol	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3008117675781	2	499.307678	996.600803	0.11751	5.8673E-05	3.3066	0.001651	3.4241	0.0017097	499.3090130958001	32.617	0.41851	32.68	32.465	32.883	0.062885					15	10	2	0	0	0	0.027866	1	2196	2196		71.296	10.324	1	91065			30430	18850;18849	21001	21041	34922	34922					0.102367093507155
KDYDNRHY	8	Unmodified	_KDYDNRHY_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2738647460938	2	555.751787	1109.48902	0.15799	8.7805E-05	-2.2178	-0.0012325	-2.0598	-0.0011447	555.7505679686508	36.352	0.63797	36.136	35.812	36.45	-0.21661					42	16	3	0	0	0	0.027866	1	2861	2861		18.324	1.8513	1	695040	+		30431	24774	21002	21042	34923	34923					-0.06134376744398651
KDYDNRHY	8	Unmodified	_KDYDNRHY_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.751787	1109.48902	-0.88251	-0.00049045	-2.997	-0.0016656	-3.8795	-0.002156	555.7500946600933	36.056	0.4474	36.056	35.886	36.334	0	0.01565	-0.00018613	NaN	12.207	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261560	+		30432	24774	21002	21042							-0.06134376744398651
KDYDNRHY	8	Unmodified	_KDYDNRHY_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.751787	1109.48902	-1.389	-0.00077192	-2.635	-0.0014644	-4.024	-0.0022363	555.7503439808278	35.945	0.40943	35.903	35.763	36.172	-0.042454	-0.13702	0.00021625	NaN	12.207	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288770	+		30433	24774	21002	21042							-0.06134376744398651
KDYERGQDD	9	Unmodified	_KDYERGQDD_					0	0	0			REV__ENST00000488401.5_1_3:183993962-184009147:+|nuORF;REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2963256835938	2	563.243992	1124.47343	0.26884	0.00015142	0.99165	0.00055854	1.2605	0.00070996	563.2444832935433	21.493	0.28399	21.316	21.113	21.397	-0.17721					8	5	2	0	0	0	0.024418	1	686	686		23.523	0	1	8646.4	+		30434	36597;33643	21003	21043	34924	34924					-0.08382708052090493
KDYHYLRDSEA	11	Unmodified	_KDYHYLRDSEA_					0	0	0		ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7637939453125	3	466.221241	1395.64189	0.82534	0.00038479	-2.8437	-0.0013258	-2.0184	-0.00094102	466.2197141435767	70.05	0.3686	69.757	69.551	69.92	-0.29291					12	8	2	0	0	0	0.02473	1	8424	8424		7.6794	0	1	56969			30435	5515	21004	21044	34925	34925					-0.040102261384163285
KDYIAKIV	8	Unmodified	_KDYIAKIV_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|1|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|1|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2898864746094	2	475.289485	948.564418	0.71579	0.00034021	-0.17753	-8.438E-05	0.53825	0.00025583	475.28925809516926	58.736	1.3135	58.828	58.118	59.432	0.091217					101	35	5	0	0	0	0.99042	1	6596	6596		38.806	3.1879	1	9270100	+		30436	36279	21005	21045	34926	34926					0.08807832453987885
KDYIENLPL	9	Unmodified	_KDYIENLPL_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-2|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.3002319335938	2	552.800414	1103.58628	-0.1011	-5.5887E-05	1.0196	0.00056366	0.91855	0.00050777	553.3031387322275	53.833	0.82737	53.93	53.629	54.457	0.096245					75	23	5	0	0	0	0.023473	1	5803	5803		75.043	2.1641	1	3202700			30437	3446	21006	21046	34927	34927					0.03862592411906007
KDYKAALGLFN	11	Unmodified	_KDYKAALGLFN_					0	0	0			REV__SPTLC3|p.E179K|1|0.12|ENSG00000172296|chr20:13074425-13074425|G/A|missense_variant	REV__SPTLC3|p.E179K|1|0.12|ENSG00000172296|chr20:13074425-13074425|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2455139160156	3	413.895917	1238.66592	-0.42575	-0.00017622	-0.7909	-0.00032735	-1.2167	-0.00050357	413.89500402770835	31.265	0.53637	31.08	30.824	31.36	-0.18503					21	13	2	0	0	0	0.024789	1	2053	2053		15.921	6.7089	1	156060	+		30438	37578	21007	21047	34928	34928					0.05613659085884137
KDYKHSDL	8	Unmodified	_KDYKHSDL_					0	0	0		ENSG00000112186|ENST00000229922|CAP2	ENSG00000112186|ENST00000229922|CAP2	ENSG00000112186|ENST00000229922|CAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.79852294921875	2	503.253631	1004.49271	0.18264	9.1915E-05	-0.077795	-3.9151E-05	0.10485	5.2764E-05	503.2535126771993	42.662	0.79342	42.688	42.393	43.186	0.026012					36	21	2	0	0	0	0.027866	1	3907	3907		15.642	0	1	1724700			30439	3181	21008	21048	34929	34929					-0.009357069705288268
KDYLMLVP	8	Unmodified	_KDYLMLVP_					0	0	0			REV__ENST00000394153.6_1_X:135251832-135288605:+|nuORF	REV__ENST00000394153.6_1_X:135251832-135288605:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.3188781738281	2	489.770071	977.52559	-0.091143	-4.4639E-05	1.6774	0.00082155	1.5863	0.00077692	489.771091042374	67.523	0.36156	67.547	67.35	67.712	0.023911					14	8	2	0	0	0	0.027866	1	7953	7953		19.36	0	1	193710	+		30440	31662	21009	21049	34930	34930					0.03592783827957646
KDYQFIKNQT	10	Unmodified	_KDYQFIKNQT_					0	0	0			REV__ENSG00000197360|ENST00000357774|ZNF98	REV__ENSG00000197360|ENST00000357774|ZNF98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7376708984375	3	428.890944	1283.651	-1.0747	-0.00046094	1.0809	0.0004636	0.0062035	2.6606E-06	428.89207501219624	25.093	0.64722	25.058	24.591	25.238	-0.034395					19	14	2	0	0	0	0.03519	1	1136	1136		9.6461	1.2389	1	36812	+		30441	28295	21010	21050	34931	34931					0.020521672179029338
KDYRRIRFV	9	Unmodified	_KDYRRIRFV_					0	0	0		ENSG00000145494|ENST00000274137|NDUFS6	ENSG00000145494|ENST00000274137|NDUFS6	ENSG00000145494|ENST00000274137|NDUFS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	418.7530212402344	3	418.247285	1251.72002	-0.071799	-3.003E-05	-1.4781	-0.00061819	-1.5499	-0.00064822	418.24653551728636	45.738	0.31631	45.641	45.461	45.777	-0.096649					12	8	2	0	0	0	0.024541	1	4338	4338		11.636	0	1	182260			30442	5817	21011	21051	34932	34932					0.10423296028102413
KDYVWIWN	8	Unmodified	_KDYVWIWN_					0	0	0		ENST00000549443.5_1_12:70671967-70726591:+|nuORF	ENST00000549443.5_1_12:70671967-70726591:+|nuORF	ENST00000549443.5_1_12:70671967-70726591:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.8062744140625	2	562.282192	1122.54983	-0.66294	-0.00037276	-0.84499	-0.00047512	-1.5079	-0.00084788	562.2803551926432	34.694	0.36009	34.507	34.241	34.601	-0.18675					16	8	3	0	0	0	0.027866	1	2568	2568		38.806	22.333	1	176920			30443	16567	21012	21052	34933	34933					-0.0065423969413132
KEACATPGPAD	11	Unmodified	_KEACATPGPAD_					0	0	0		ENSG00000163116|ENST00000295268|STPG2	ENSG00000163116|ENST00000295268|STPG2	ENSG00000163116|ENST00000295268|STPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2403564453125	2	530.242406	1058.47026	-1.6646	-0.00088263	-1.1604	-0.0006153	-2.825	-0.0014979	530.2417220414414	110.58	0.98775	110.44	109.89	110.88	-0.13983					75	39	2	0	0	0	1.0748	1	13568	13568		18.262	0.89712	1	68316			30444	7037	21013	21053	34934	34934					-0.056636744304796593
KEAHGEILY	9	Unmodified	_KEAHGEILY_					0	0	0		ENSG00000112294|ENST00000357578|ALDH5A1;nc|ENSG00000112294|P51649-2|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2774047851562	2	530.277106	1058.53966	0.59699	0.00031657	-1.188	-0.00062999	-0.59106	-0.00031342	530.2766320210427	58.835	1.0862	58.593	58.173	59.259	-0.24165					81	26	5	0	0	0	0.25032	2	6473	6473;6485		82.305	2.854	1	15720000			30445	3195	21014	21054	34935;34936	34935					0.01273152580643
KEAKEKAQAL	10	Unmodified	_KEAKEKAQAL_					0	0	0		ENST00000526769.3_1_11:6735844-6741409:-|nuORF;nc|ENSG00000254838|Q7Z2Y8|GVINP1	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	ENST00000526769.3_1_11:6735844-6741409:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.3240966796875	2	558.324588	1114.63462	-0.24155	-0.00013486	-0.053943	-3.0118E-05	-0.2955	-0.00016498	558.3245220458238	98.866	1.0033	98.698	98.24	99.243	-0.16862					43	22	3	0	0	0	1.1267	1	12246	12246		29.15	1.2673	1	265440			30446	16130	21015	21055	34937	34937					0.08189086051788763
KEALEKEGE	9	Unmodified	_KEALEKEGE_					0	0	0			REV__ENSG00000156313|ENST00000645032|RPGR	REV__ENSG00000156313|ENST00000645032|RPGR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7466430664062	2	516.764029	1031.5135	-0.076484	-3.9524E-05	0.81389	0.00042059	0.73741	0.00038107	516.7642425570763	23.909	0.21692	23.73	23.651	23.868	-0.17989					6	4	2	0	0	0	0.024261	1	1000	1000		54.776	3.4409	1	15912	+		30447	25069	21016	21056	34938	34938					-0.0009916138151311316
KEALEKEGE	9	Unmodified	_KEALEKEGE_					0	0	0			REV__ENSG00000156313|ENST00000645032|RPGR	REV__ENSG00000156313|ENST00000645032|RPGR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.764029	1031.5135	-0.63853	-0.00032997	-4.5422	-0.0023473	-5.1808	-0.0026772	516.7614748221519	23.722	0.53706	23.799	23.69	24.228	0.076241	0.034479	-0.0020045	NaN	54.776	16	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20946	+		30448	25069	21016	21056							-0.0009916138151311316
KEALQPPGF	9	Unmodified	_KEALQPPGF_					0	0	0		ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7847595214844	2	493.768917	985.523281	-0.18361	-9.0662E-05	0.53101	0.00026219	0.34739	0.00017153	493.7695904305504	47.774	0.32273	47.621	47.441	47.764	-0.15301					9	9	2	0	0	0	0.024457	1	4763	4763		21.96	9.0007	1	142170			30449	3626	21017	21057	34939	34939					0.0299407141451411
KEAQPGKKQLL	11	Unmodified	_KEAQPGKKQLL_					0	0	0		ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	619.8110961914062	2	620.374612	1238.73467	-0.36227	-0.00022475	-1.8069	-0.001121	-2.1692	-0.0013457	620.3731701338559	46.16	0.18037	46.16	46.056	46.236	0					7	4	2	0	0	0	0.024723	1	4541	4541		23.523	1.5628	1	59383			30450	4673	21018	21058	34940	34940					0.12485323385612901
KEATAFLFLSI	11	Unmodified	_KEATAFLFLSI_					0	0	0		ENST00000513619.5_1_3:141087347-141087425:+|nuORF	ENST00000513619.5_1_3:141087347-141087425:+|nuORF	ENST00000513619.5_1_3:141087347-141087425:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.55029296875	3	413.904301	1238.69108	-0.13386	-5.5404E-05	-0.19835	-8.2099E-05	-0.33221	-0.0001375	413.90410138663884	28.978	1.3521	29.059	28.742	30.094	0.080812					74	33	5	0	0	0	0.024739	1	1733	1733		35.178	9.6042	1	550270			30451	15871	21019	21059	34941	34941					0.08127713888461585
KEATELQSI	9	Unmodified	_KEATELQSI_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7738952636719	2	509.774396	1017.53424	-0.35484	-0.00018089	0.14098	7.1869E-05	-0.21385	-0.00010902	509.77433469216845	69.28	0.89853	69.28	69.016	69.915	0					69	22	4	0	0	0	0.048057	1	8354	8354		129.42	3.7084	1	2534200			30452	9199	21020	21060	34942	34942					0.026174289981554466
KEAVAKRP	8	Unmodified	_KEAVAKRP_					0	0	0			REV__DHX16|p.V76A|1|0.25|ENSG00000204560|chr6:30671255-30671255|A/G|missense_variant	REV__DHX16|p.V76A|1|0.25|ENSG00000204560|chr6:30671255-30671255|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.23297119140625	2	449.777077	897.5396	0.27907	0.00012552	-1.0378	-0.00046678	-0.75874	-0.00034126	449.7766021881309	25.95	0.25775	26.03	25.792	26.049	0.08009					7	5	2	0	0	0	0.027866	1	1213	1213		35.618	0	1	35085	+		30453	19671	21021	21061	34943	34943					0.08673197371274455
KEAVTTLEL	9	Unmodified	_KEAVTTLEL_					0	0	0			REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2879638671875	2	502.28714	1002.55973	0.62031	0.00031157	-0.78449	-0.00039404	-0.16419	-8.2469E-05	502.286679286374	71.433	0.81075	71.145	70.802	71.613	-0.28858					61	20	4	0	0	0	0.14024	1	8645	8645		101.6	0	1	6678600	+		30454	36547	21022	21062	34944	34944					0.05854903520571497
KECHDREVQ	9	Unmodified	_KECHDREVQ_					0	0	0		nc|ENSG00000101773|Q99708-2|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;RBBP8|p.R67Kfs*16|1|0.05|ENSG00000101773|chr18:22949664-22949665|-/AAAGGTCAGGTTGGAATATCTT|frameshift_variant;nc|ENSG00000101773|Q99708-3|RBBP8;RBBP8-TAF4B|1|fusion	nc|ENSG00000101773|Q99708-2|RBBP8;nc|ENSG00000101773|Q99708-3|RBBP8;RBBP8-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.2620849609375	2	572.264204	1142.51386	-1.0653	-0.00060961	-2.4712	-0.0014142	-3.5365	-0.0020238	572.2626642387215	42.946	1.3027	42.946	42.355	43.658	0					79	35	3	0	0	0	0.19099	2	3994	3983;3994		90.37	15.327	1	4411200			30455	19033;18132;2348	21023	21063	34945;34946	34946					-0.05170064933327012
KECHDREVQ	9	Unmodified	_KECHDREVQ_					0	0	0		nc|ENSG00000101773|Q99708-2|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;RBBP8|p.R67Kfs*16|1|0.05|ENSG00000101773|chr18:22949664-22949665|-/AAAGGTCAGGTTGGAATATCTT|frameshift_variant;nc|ENSG00000101773|Q99708-3|RBBP8;RBBP8-TAF4B|1|fusion	nc|ENSG00000101773|Q99708-2|RBBP8;nc|ENSG00000101773|Q99708-3|RBBP8;RBBP8-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	572.2623291015625	2	572.264204	1142.51386	-0.25021	-0.00014319	-3.155	-0.0018055	-3.4052	-0.0019487	572.262299854047	43.113	1.0838	42.974	42.667	43.751	-0.13929					66	29	4	0	0	0	0.14181	1	4006	4006		101.25	31.625	1	4738900			30456	19033;18132;2348	21023	21063	34947	34947					-0.05170064933327012
KECHDREVQ	9	Unmodified	_KECHDREVQ_					0	0	0		nc|ENSG00000101773|Q99708-2|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;RBBP8|p.R67Kfs*16|1|0.05|ENSG00000101773|chr18:22949664-22949665|-/AAAGGTCAGGTTGGAATATCTT|frameshift_variant;nc|ENSG00000101773|Q99708-3|RBBP8;RBBP8-TAF4B|1|fusion	nc|ENSG00000101773|Q99708-2|RBBP8;nc|ENSG00000101773|Q99708-3|RBBP8;RBBP8-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.2620849609375	2	572.264204	1142.51386	-0.03209	-1.8364E-05	-3.2306	-0.0018488	-3.2627	-0.0018671	572.2620928900733	43.109	1.4607	42.996	42.735	44.195	-0.11253					119	39	5	0	0	0	0.26966	1	3947	3947		79.713	10.926	1	13018000			30457	19033;18132;2348	21023	21063	34948	34948					-0.05170064933327012
KEDINPHYI	9	Unmodified	_KEDINPHYI_					0	0	0			REV__nc|ENSG00000185651|P68036-3|UBE2L3	REV__nc|ENSG00000185651|P68036-3|UBE2L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.31640625	2	564.787838	1127.56112	-0.47342	-0.00026738	-2.3298	-0.0013158	-2.8032	-0.0015832	565.2883165756309	94.798	0.52049	94.798	94.53	95.05	0					18	11	2	0	0	0	0.024263	1	12099	12099		60.972	15	1	112300	+		30458	37016	21024	21064	34949	34949					0.0024453760931919533
KEDINPHYI	9	Unmodified	_KEDINPHYI_					0	0	0			REV__nc|ENSG00000185651|P68036-3|UBE2L3	REV__nc|ENSG00000185651|P68036-3|UBE2L3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.787838	1127.56112	-0.53374	-0.00030145	-1.127	-0.0006365	-1.6607	-0.00093795	564.7861880111071	94.702	0.4311	94.564	94.333	94.765	-0.13779	-0.12424	0.0016288	NaN	60.972	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61144	+		30459	37016	21024	21064							0.0024453760931919533
KEDINPHYI	9	Unmodified	_KEDINPHYI_					0	0	0			REV__nc|ENSG00000185651|P68036-3|UBE2L3	REV__nc|ENSG00000185651|P68036-3|UBE2L3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.787838	1127.56112	0.48366	0.00027316	-3.4894	-0.0019707	-3.0057	-0.0016976	564.7857123623086	94.699	0.47321	94.577	94.34	94.813	-0.12215	-0.11167	-0.0010397	NaN	60.972	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82129	+		30460	37016	21024	21064							0.0024453760931919533
KEDLLKSSK	9	Unmodified	_KEDLLKSSK_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2852172851562	2	524.305864	1046.59717	-0.43521	-0.00022818	-0.2049	-0.00010743	-0.64011	-0.00033561	524.3077831181571	66.36	0.47256	66.114	65.823	66.295	-0.24677					18	11	2	0	0	0	0.024288	1	7565	7565		62.107	0	1	59687			30461	7789	21025	21065	34950	34950					0.07573994786184812
KEDVAMAKREI	11	Unmodified	_KEDVAMAKREI_					0	0	0		ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7376708984375	3	430.567583	1288.68092	-0.58608	-0.00025235	2.0811	0.00089607	1.4951	0.00064372	430.5684724002623	24.72	0.70576	24.72	24.429	25.135	0					25	15	2	0	0	0	0.024649	1	1127	1127		45.908	7.194	1	116820			30462	8655	21026	21066	34951	34951					0.04812782891576717
KEEEELLFFF	10	Unmodified	_KEEEELLFFF_					0	0	0		ENSG00000163885|ENST00000352312|CFAP100;nc|ENSG00000163885|Q494V2-2|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	3	444.2237	1329.64927	-0.64675	-0.0002873	4.3257	0.0019216	3.6789	0.0016343	444.2256706458337	29.83	0.58931	29.586	29.23	29.82	-0.24425					26	13	3	0	0	0	0.03519	1	1819	1819		46.457	14.823	1	132210			30463	7166	21027	21067	34952	34952					-0.0023688659073286544
KEEEPRKKI	9	Unmodified	_KEEEPRKKI_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.83740234375	2	578.837862	1155.66117	-1.6166	-0.00093575	0.40172	0.00023253	-1.2149	-0.00070322	578.8384221503417	38.6	0.76699	38.628	38.23	38.997	0.027275					62	20	4	0	0	0	0.053401	1	3194	3194		127.46	8.7186	1	2629300	+		30464	36693	21028	21068	34953	34953					0.08956774943135315
KEEERRRKKRR	11	Unmodified	_KEEERRRKKRR_					0	0	0			REV__ENST00000235307.6_1_1:184356289-184446531:+|nuORF	REV__ENST00000235307.6_1_1:184356289-184446531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.3171997070312	3	524.316873	1569.92879	1.201	0.00062973	0.39497	0.00020709	1.596	0.00083682	524.317041108015	17.186	0.30292	17.032	16.907	17.209	-0.15403					9	5	2	0	0	0	1.1135	1	157	157		6.001	0	1	90965	+		30465	29427	21029	21069	34954	34954					0.16662092594219757
KEEEVLPVEV	10	Unmodified	_KEEEVLPVEV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.7474975585938	2	585.816261	1169.61797	-0.35201	-0.00020622	-2.6685	-0.0015633	-3.0205	-0.0017695	585.8148490288053	61.595	0.24902	61.381	61.167	61.416	-0.21375					6	5	2	0	0	0	0.03519	1	6887	6887		32.812	3.6629	1	55653			30466	6479	21030	21070	34955	34955					0.03994540375197175
KEEEWDPE	8	Unmodified	_KEEEWDPE_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2904663085938	2	531.224736	1060.43492	-1.0012	-0.00053186	2.762	0.0014673	1.7609	0.00093541	531.2261585046853	55.449	0.41554	55.303	55.057	55.472	-0.14609					18	11	2	0	0	0	0.027866	1	5956	5956		12.207	0	1	172040			30467	1005	21031	21071	34956	34956					-0.0928801368661425
KEEIEDEEKT	10	Unmodified	_KEEIEDEEKT_					0	0	0		nc|ENSG00000198001|Q9NWZ3-2|IRAK4;ENSG00000198001|ENST00000613694|IRAK4	nc|ENSG00000198001|Q9NWZ3-2|IRAK4	nc|ENSG00000198001|Q9NWZ3-2|IRAK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.9029541015625	3	417.19799	1248.57214	-0.065587	-2.7363E-05	3.3957	0.0014167	3.3301	0.0013893	417.1996970719283	32.238	0.3055	32.001	31.824	32.13	-0.23666					10	6	2	0	0	0	0.03519	1	2192	2192		33.039	9.6615	1	45283			30468	10082	21032	21072	34957	34957					-0.04220149597699674
KEEKDLIT	8	Unmodified	_KEEKDLIT_					0	0	0			REV__ENSG00000183891|ENST00000333610|TTC32	REV__ENSG00000183891|ENST00000333610|TTC32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.259033203125	2	488.27149	974.528426	0.12893	6.2952E-05	3.7768	0.0018441	3.9058	0.0019071	488.2746322143478	41.46	0.32071	41.46	41.258	41.579	0					13	8	3	0	0	0	0.027866	1	3721	3721		34.173	0	1	147650	+		30469	27623	21033	21073	34958	34958					0.040143304864727725
KEELLKSI	8	Unmodified	_KEELLKSI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7350769042969	2	480.292225	958.569897	0.26609	0.0001278	-0.34854	-0.0001674	-0.082452	-3.9601E-05	480.29189006819365	59.091	0.65773	59.177	58.921	59.579	0.085682					34	17	3	0	0	0	0.027866	1	6708	6708		45.972	0	1	632810			30470	4485	21034	21074	34959	34959					0.08895511245816579
KEEMDEAGNK	10	Oxidation (M)	_KEEM(Oxidation (M))DEAGNK_		KEEM(1)DEAGNK		KEEM(71)DEAGNK	0	0	1		ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-4|ARHGAP17	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.7520751953125	2	583.753335	1165.49212	-0.56743	-0.00033124	-1.2321	-0.00071926	-1.7996	-0.0010505	583.7524398106203	74.499	0.79935	74.24	73.944	74.743	-0.25887					44	18	3	0	0	0	0.65479	1	9084	9084		70.816	14.382	1	1701800			30471	120	21035	21075	34960	34960		1			-0.08400914472554177
KEEMERELQ	9	Unmodified	_KEEMERELQ_					0	0	0		CASP8|p.I98Mfs*14|1|0.18|ENSG00000064012|chr2:201266779-201266782|TTTC/-|frameshift_variant;ENST00000471383.5_1_2:202131194-202137540:+|nuORF;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;nc|ENSG00000064012|Q14790-3|CASP8;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	CASP8|p.I98Mfs*14|1|0.18|ENSG00000064012|chr2:201266779-201266782|TTTC/-|frameshift_variant	CASP8|p.I98Mfs*14|1|0.18|ENSG00000064012|chr2:201266779-201266782|TTTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	597.2821655273438	2	596.287345	1190.56014	-1.1281	-0.00067265	2.0794	0.0012399	0.95139	0.0005673	596.2884542225545	76.798	0.45195	76.57	76.279	76.731	-0.22843					17	10	2	0	0	0	0.023291	1	9408	9408		101.25	5.4375	1	221490			30472	219	21036	21076	34961	34961					-0.027520448218638194
KEEMERELQ	9	Unmodified	_KEEMERELQ_					0	0	0		CASP8|p.I98Mfs*14|1|0.18|ENSG00000064012|chr2:201266779-201266782|TTTC/-|frameshift_variant;ENST00000471383.5_1_2:202131194-202137540:+|nuORF;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF;nc|ENSG00000064012|Q14790-3|CASP8;CASP8|p.N414Tfs*24|1|0.19|ENSG00000064012|chr2:201285254-201285255|AC/-|frameshift_variant;nc|ENSG00000064012|Q14790-2|CASP8;CASP8|p.K461Nfs*10|1|0.14|ENSG00000064012|chr2:201286531-201286531|G/-|frameshift_variant;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	CASP8|p.I98Mfs*14|1|0.18|ENSG00000064012|chr2:201266779-201266782|TTTC/-|frameshift_variant	CASP8|p.I98Mfs*14|1|0.18|ENSG00000064012|chr2:201266779-201266782|TTTC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	596.287345	1190.56014	-1.2884	-0.00076826	2.575	0.0015354	1.2866	0.00076719	596.288931931983	76.618	0.49133	76.618	76.308	76.799	0	0.1192	0.0014501	NaN	101.25	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187140			30473	219	21036	21076							-0.027520448218638194
KEENYSPVV	9	Unmodified	_KEENYSPVV_					0	0	0			REV__ENSG00000120697|ENST00000239891|ALG5	REV__ENSG00000120697|ENST00000239891|ALG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7684936523438	2	532.766571	1063.51859	-0.9244	-0.00049249	3.8217	0.0020361	2.8973	0.0015436	532.7684389141925	23.011	0.40812	23.011	22.757	23.165	0					27	8	4	0	0	0	0.53979	1	866	866		56.721	1.2168	1	492690	+		30474	22550	21037	21077	34962	34962					-0.010628575189002731
KEETAEYAKL	10	Unmodified	_KEETAEYAKL_					0	0	0		ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENST00000393214.2_1_X:73595962-73596157:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	591.8093872070312	2	591.306061	1180.59757	-0.3911	-0.00023126	1.7923	0.0010598	1.4012	0.00082853	591.3070016015475	40.984	1.4503	40.861	40.162	41.612	-0.12317					51	28	3	0	0	0	0.03519	1	3749	3749		44.377	9.2252	1	529620			30475	13441	21038	21078	34963	34963					0.014493697153739049
KEETAEYAKL	10	Unmodified	_KEETAEYAKL_					0	0	0		ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENST00000393214.2_1_X:73595962-73596157:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	591.306061	1180.59757	-1.1827	-0.00069933	2.5139	0.0014865	1.3312	0.00078713	591.3073232593117	40.835	1.0812	40.835	40.314	41.396	0	-0.090714	0.0006533	NaN	49.536	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583030			30476	13441	21038	21078							0.014493697153739049
KEETAEYAKL	10	Unmodified	_KEETAEYAKL_					0	0	0		ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENST00000393214.2_1_X:73595962-73596157:-|nuORF	ENST00000393214.2_1_X:73595962-73596157:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	591.306061	1180.59757	0.2547	0.0001506	1.1373	0.00067248	1.392	0.00082309	591.306404472241	41.057	1.1426	41.08	40.527	41.67	0.023006	0.1551	-0.00097467	NaN	49.536	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565570			30477	13441	21038	21078							0.014493697153739049
KEEVQQLR	8	Unmodified	_KEEVQQLR_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3116455078125	2	515.288005	1028.56146	-0.10257	-5.2853E-05	-1.2579	-0.00064816	-1.3604	-0.00070102	515.2878409849444	20.062	0.23708	19.894	19.718	19.955	-0.16774					6	4	2	0	0	0	0.027866	1	508	508		106.42	1.6687	1	25715	+		30478	36675	21039	21079	34964	34964					0.04831957329179204
KEEWMNKV	8	Unmodified	_KEEWMNKV_					0	0	0		ENSG00000154803|ENST00000285071|FLCN	ENSG00000154803|ENST00000285071|FLCN	ENSG00000154803|ENST00000285071|FLCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2904663085938	2	532.265684	1062.51682	-1.0812	-0.00057549	2.0026	0.0010659	0.92137	0.00049041	532.2656953651077	55.561	0.21809	55.404	55.244	55.462	-0.15656					7	5	2	0	0	0	0.027866	1	5956	5956		7.1934	0	1	87126			30479	6436	21040	21080	34965	34965					-0.011941898085069624
KEFANQILS	9	Unmodified	_KEFANQILS_					0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7767944335938	2	525.284931	1048.55531	-0.56542	-0.00029701	-2.3246	-0.0012211	-2.89	-0.0015181	525.2805925815843	49.053	0.56675	49.053	48.795	49.362	0					37	15	4	0	0	0	0.024541	1	5090	5090		16.473	0	1	533040	+		30480	20607	21041	21081	34966	34966					0.03297439097673305
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7950439453125	2	525.795132	1049.57571	-1.7177	-0.00090314	1.0631	0.00055898	-0.65456	-0.00034416	525.7956280387338	36.135	1.3134	36.135	35.492	36.805	0					115	35	6	0	0	0	0.034407	4	2827	2827;2838;2850;2865		138.06	37.601	1	13954000			30481	1697;13251	21042	21082	34967;34968;34969;34970	34967					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.795166015625	2	525.795132	1049.57571	-1.3598	-0.00071498	0.64825	0.00034084	-0.71156	-0.00037413	525.7953925880583	35.967	1.5222	35.925	35.287	36.81	-0.042454					113	40	5	0	0	0	0.041068	4	2782	2782;2792;2806;2818		132.76	34.128	1	13256000			30482	1697;13251	21042	21082	34971;34972;34973;34974	34971					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7948608398438	2	525.795132	1049.57571	-0.35228	-0.00018523	-0.31352	-0.00016485	-0.6658	-0.00035007	525.7949134780787	36.048	1.4296	36.086	35.414	36.843	0.038044					106	38	5	0	0	0	0.01896	4	2785	2760;2772;2785;2798		150.36	38.628	1	11412000			30483	1697;13251	21042	21082	34975;34976;34977;34978	34977					0.052906097574805244
KEFELQQTL	9	Unmodified	_KEFELQQTL_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.3011474609375	2	568.303321	1134.59209	-0.49958	-0.00028391	3.0561	0.0017368	2.5565	0.0014529	568.3050109953658	67.186	0.80505	66.903	66.671	67.476	-0.2825					40	19	3	0	0	0	0.065	1	7987	7987		123.21	10.797	1	828250	+		30484	24196	21043	21083	34979	34979					0.030176909235706262
KEFELQQTL	9	Unmodified	_KEFELQQTL_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.3002319335938	2	568.303321	1134.59209	-0.94847	-0.00053902	3.2976	0.001874	2.3491	0.001335	568.3053820421599	66.907	0.62276	66.931	66.728	67.35	0.023911					33	14	3	0	0	0	0.038547	1	7899	7899		134.77	2.0077	1	679180	+		30485	24196	21043	21083	34980	34980					0.030176909235706262
KEFILSGLFTT	11	Unmodified	_KEFILSGLFTT_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	419.1658935546875	3	419.23594	1254.68599	-0.43813	-0.00018368	-0.24567	-0.000103	-0.6838	-0.00028667	419.56995734079743	22.86	0.37011	22.675	22.507	22.877	-0.18539					13	7	3	0	0	0	0.024735	1	864	864		21.78	0	1	48459	+		30486	28165	21044	21084	34981	34981					0.06883410025852754
KEFQLPTT	8	Unmodified	_KEFQLPTT_					0	0	0		ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-2|OGDHL	ENSG00000197444|ENST00000374103|OGDHL	ENSG00000197444|ENST00000374103|OGDHL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2821044921875	2	482.260925	962.507297	-0.27847	-0.0001343	1.2907	0.00062243	1.0122	0.00048813	482.26141287744287	46.472	0.76473	46.523	46.031	46.796	0.051395					41	21	5	0	0	0	0.027866	1	4514	4514		58.782	0	1	621880			30487	9998	21045	21085	34982	34982					0.02454365177618456
KEFSVNKVK	9	Unmodified	_KEFSVNKVK_					0	0	0			REV__ENSG00000119938|ENST00000238994|PPP1R3C	REV__ENSG00000119938|ENST00000238994|PPP1R3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8160400390625	2	539.816399	1077.61824	-0.77835	-0.00042017	-0.98218	-0.0005302	-1.7605	-0.00095036	539.8157256116305	45.443	0.84382	45.443	45.246	46.09	0					53	24	4	0	0	0	0.53979	1	4432	4432		56.721	3.7844	1	3225200	+		30488	22502	21046	21086	34983	34983					0.0825400488570267
KEFYEQNEP	9	Unmodified	_KEFYEQNEP_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	591.8094482421875	2	592.266936	1182.51932	-1.1538	-0.00068336	1.0999	0.00065145	-0.053866	-3.1903E-05	592.2675395607013	42.396	1.9719	42.396	41.432	43.404	0					90	55	2	0	0	0	0.024477	1	3748	3748		35.618	7.736	1	427900	+		30489	19886	21047	21087	34984	34984					-0.0646406286984984
KEFYEQNEP	9	Unmodified	_KEFYEQNEP_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	592.266936	1182.51932	-0.91085	-0.00053947	1.1741	0.00069535	0.26321	0.00015589	592.267359905186	42.539	1.3924	42.406	41.824	43.217	-0.13273	-0.073955	0.00016462	NaN	35.618	73	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397790	+		30490	19886	21047	21087							-0.0646406286984984
KEFYEQNEP	9	Unmodified	_KEFYEQNEP_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	592.266936	1182.51932	0.25534	0.00015123	-0.12748	-7.5503E-05	0.12786	7.5726E-05	592.2666606392594	42.519	1.174	42.545	42.088	43.262	0.026012	0.064316	-0.0013771	NaN	35.618	68	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473280	+		30491	19886	21047	21087							-0.0646406286984984
KEFYEQNEP	9	Unmodified	_KEFYEQNEP_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.266936	1182.51932	-0.65321	-0.00038687	1.7993	0.0010657	1.1461	0.00067879	592.2679392720602	42.615	0.68886	42.492	42.155	42.844	-0.12299	0.012075	0.00090524	NaN	35.618	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216750	+		30492	19886	21047	21087							-0.0646406286984984
KEFYEQNEP	9	Unmodified	_KEFYEQNEP_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.266936	1182.51932	-1.0901	-0.00064564	2.2718	0.0013455	1.1817	0.00069989	592.2681775043881	42.683	0.65068	42.451	42.194	42.845	-0.23186	-0.028831	0.001465	NaN	35.618	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288780	+		30493	19886	21047	21087							-0.0646406286984984
KEFYEQNEP	9	Unmodified	_KEFYEQNEP_					0	0	0			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	592.266936	1182.51932	-1.0217	-0.00060513	2.4748	0.0014658	1.4531	0.00086062	592.2684187043546	42.817	0.65258	42.591	42.26	42.912	-0.22597	0.11094	0.0017054	NaN	35.618	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230450	+		30494	19886	21047	21087							-0.0646406286984984
KEFYQFPRYWW	11	Unmodified	_KEFYQFPRYWW_					0	0	0			REV__ENSG00000198964|ENST00000361781|SGMS1	REV__ENSG00000198964|ENST00000361781|SGMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2100830078125	4	413.202947	1648.78268	0.89882	0.0003714	-1.0395	-0.00042952	-0.14067	-5.8125E-05	413.20254817253493	20.472	0.53709	20.277	19.947	20.484	-0.19577					16	10	2	0	0	0	0.024895	1	557	557		3.6191	0	1	29037	+		30495	28532	21048	21088	34985	34985					-0.015756026943563484
KEGCPQAF	8	Unmodified	_KEGCPQAF_					0	0	0		ENSG00000160224|ENST00000291582|AIRE	ENSG00000160224|ENST00000291582|AIRE	ENSG00000160224|ENST00000291582|AIRE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.76629638671875	2	440.205096	878.395638	-0.44513	-0.00019595	0.2588	0.00011393	-0.18632	-8.202E-05	440.20510195544426	36.89	1.1442	36.67	36.047	37.192	-0.2195					42	28	2	0	0	0	0.027866	1	2979	2979		28.254	0	1	132400			30496	6796	21049	21089	34986	34986					-0.04842392451178057
KEGDWQPNL	9	Unmodified	_KEGDWQPNL_					0	0	0			REV__nc|ENSG00000167419|P22079-2|LPO	REV__nc|ENSG00000167419|P22079-2|LPO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3314208984375	2	543.764363	1085.51417	-1.1324	-0.00061574	3.5567	0.001934	2.4243	0.0013182	543.7660496808242	44.881	0.58959	44.881	44.657	45.246	0					36	16	3	0	0	0	0.024418	1	4300	4300		54.776	10.399	1	1020600	+		30497	26140	21050	21090	34987	34987					-0.025163219418118388
KEGFMTFNI	9	Unmodified	_KEGFMTFNI_					0	0	0			REV__ENST00000569826.2_1_15:42864283-42864628:+|nuORF	REV__ENST00000569826.2_1_15:42864283-42864628:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3319702148438	2	543.76806	1085.52157	-1.4337	-0.00077962	-2.5671	-0.0013959	-4.0009	-0.0021755	543.766328385503	45.048	0.52011	44.899	44.628	45.148	-0.1488					32	14	3	0	0	0	0.024288	1	4313	4313		62.107	14.45	1	910320	+		30498	35378	21051	21091	34988	34988					-0.01777305665723361
KEGKEREEDQW	11	Unmodified	_KEGKEREEDQW_					0	0	0			REV__ENSG00000156313|ENST00000645032|RPGR	REV__ENSG00000156313|ENST00000645032|RPGR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7919616699219	3	478.560034	1432.65827	-0.22884	-0.00010951	4.2686	0.0020428	4.0398	0.0019333	478.56170812929753	45.845	0.47082	45.584	45.383	45.854	-0.26118					26	12	3	0	0	0	0.024727	1	4379	4379		29.551	6.9892	1	132140	+		30499	25069	21052	21092	34989	34989					-0.04075144972330236
KEGKGQGWW	9	Unmodified	_KEGKGQGWW_					0	0	0		ENST00000368444.7_1_6:123100853-123100973:+|nuORF	ENST00000368444.7_1_6:123100853-123100973:+|nuORF	ENST00000368444.7_1_6:123100853-123100973:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.805419921875	2	538.269616	1074.52468	-0.94987	-0.00051129	0.53778	0.00028947	-0.41209	-0.00022182	538.7724252017274	36.655	0.65679	36.693	36.613	37.27	0.038044					19	16	2	0	0	0	0.024447	1	2953	2953		40.778	1.5253	1	153790			30500	12892	21053	21093	34990	34990					-0.009602944967127769
KEGKYGKP	8	Unmodified	_KEGKYGKP_					0	0	0			REV__ENSG00000142156|ENST00000361866|COL6A1	REV__ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.26849365234375	2	453.75581	905.497067	-0.37428	-0.00016983	1.0008	0.0004541	0.62649	0.00028427	453.7561085397339	25.642	0.59106	25.47	25.159	25.75	-0.17151					30	13	3	0	0	0	0.027866	1	1191	1191		31.955	0	1	239370	+		30501	24135	21054	21094	34991	34991					0.040538022430382625
KEGRMSYAD	9	Unmodified	_KEGRMSYAD_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-3|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8187866210938	2	528.742573	1055.47059	0.40519	0.00021424	-1.4556	-0.00076962	-1.0504	-0.00055537	528.7418048783767	70.013	0.36662	69.721	69.633	70	-0.29292					12	8	2	0	0	0	0.024511	1	8453	8453		32.812	0	1	546560			30502	1514	21055	21095	34992	34992					-0.05492254710588895
KEGSDLRPVV	10	Unmodified	_KEGSDLRPVV_					0	0	0		ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.30615234375	2	550.308938	1098.60332	-0.27588	-0.00015182	-0.12231	-6.7308E-05	-0.39819	-0.00021913	550.3087960744335	52.338	1.0355	52.191	51.95	52.985	-0.14735					64	26	4	0	0	0	0.50517	1	5582	5582		87.696	1.8346	1	3971000			30503	7163	21056	21096	34993	34993					0.05796513017685356
KEGVPLINAF	10	Unmodified	_KEGVPLINAF_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2748413085938	2	544.310949	1086.60735	-1.0939	-0.00059541	3.1648	0.0017226	2.0709	0.0011272	544.3125163344475	77.917	0.70264	77.933	77.492	78.195	0.015907					18	16	2	0	0	0	0.03519	1	9538	9538		82.241	41.462	1	89558	+		30504	28824	21057	21097	34994	34994					0.06750602511419856
KEGYDRRPV	9	Unmodified	_KEGYDRRPV_					0	0	0		nc|ENSG00000137500|Q9GZT6-2|CCDC90B;ENSG00000137500|ENST00000529689|CCDC90B;ENST00000529312.5_1_11:82985712-82996176:-|nuORF;ENST00000526631.1_1_11:82985654-82997015:-|nuORF	nc|ENSG00000137500|Q9GZT6-2|CCDC90B	nc|ENSG00000137500|Q9GZT6-2|CCDC90B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.297607421875	2	560.298904	1118.58326	-0.62717	-0.0003514	-0.14608	-8.1848E-05	-0.77325	-0.00043325	560.2988368147162	38.408	1.1033	38.19	37.926	39.029	-0.21849					74	30	4	0	0	0	0.70156	1	3186	3186		45.972	0	1	10207000			30505	5131	21058	21098	34995	34995					0.028707620777595366
KEHRVHML	8	Unmodified	_KEHRVHML_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2870483398438	2	525.287285	1048.56002	0.23805	0.00012504	-0.32961	-0.00017314	-0.091562	-4.8096E-05	525.2869713887604	18.639	0.74148	18.435	18.163	18.904	-0.20371					39	14	4	0	0	0	0.65272	1	309	309		71.378	8.0716	1	604300	+		30506	37281	21059	21099	34996	34996					0.037680447594539146
KEIEALSKITI	11	Unmodified	_KEIEALSKITI_					0	0	0			REV__ENSG00000196814|ENST00000361171|MVB12B	REV__ENSG00000196814|ENST00000361171|MVB12B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.70953369140625	3	415.586861	1243.73875	-0.85738	-0.00035632	-1.7825	-0.00074077	-2.6398	-0.0010971	415.5861104091303	26.555	0.77264	26.319	25.977	26.75	-0.23603					43	20	3	0	0	0	0.024763	1	1374	1374		29.245	0	1	436230	+		30507	28226	21060	21100	34997	34997					0.12663368088647076
KEIFERRR	8	Unmodified	_KEIFERRR_					0	0	0		nc|ENSG00000001626|P13569-3|CFTR	nc|ENSG00000001626|P13569-3|CFTR	nc|ENSG00000001626|P13569-3|CFTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3305053710938	2	567.330539	1132.64652	-1.643	-0.00093215	0.013669	7.7548E-06	-1.6294	-0.00092439	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.043	1	11387	11387		30.504	1.3336	1	14057000			30508	18025	21061	21101	34998	34998					0.08550747585650242
KEIFLEIN	8	Unmodified	_KEIFLEIN_					0	0	0		CUZD1|p.D204N|1|0.33|ENSG00000138161|chr10:122837038-122837038|C/T|missense_variant	CUZD1|p.D204N|1|0.33|ENSG00000138161|chr10:122837038-122837038|C/T|missense_variant	CUZD1|p.D204N|1|0.33|ENSG00000138161|chr10:122837038-122837038|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.81390380859375	2	503.2844	1004.55425	0.27867	0.00014025	-0.046399	-2.3352E-05	0.23227	0.0001169	503.28436410981567	95.968	0.85482	95.832	95.287	96.142	-0.13689					30	19	2	0	0	0	0.027866	1	11863	11863		35.618	1.4457	1	510170			30509	609	21062	21102	34999	34999					0.052152247287381215
KEIHIRSAE	9	Unmodified	_KEIHIRSAE_					0	0	0			REV__ENSG00000070886|ENST00000166244|EPHA8	REV__ENSG00000070886|ENST00000166244|EPHA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.32470703125	2	541.80128	1081.58801	-0.97335	-0.00052736	0.30419	0.00016481	-0.66916	-0.00036255	541.8013307937947	45.153	0.88845	45.153	44.691	45.58	0					46	25	2	0	0	0	0.024261	1	4420	4420		54.776	0	1	3630200	+		30510	20439	21063	21103	35000	35000					0.050476462205324424
KEIIILSCV	9	Unmodified	_KEIIILSCV_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-2|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.3060607910156	2	509.304278	1016.594	-1.0243	-0.0005217	4.4212	0.0022517	3.3968	0.00173	509.306410243242	91.78	1.6681	91.78	91.383	93.051	0					111	39	5	0	0	0	0.77768	1	11642	11642		40.778	3.6191	1	3058500			30511	5262	21064	21104	35001	35001					0.08637028407838443
KEIIILSCV	9	Unmodified	_KEIIILSCV_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-2|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.3060302734375	2	509.304278	1016.594	0.26627	0.00013561	3.1542	0.0016064	3.4204	0.001742	509.30576152941245	91.807	1.4459	91.816	91.442	92.888	0.0094147					101	34	5	0	0	0	0.94779	1	11581	11581		29.17	4.6509	1	3719700			30512	5262	21064	21104	35002	35002					0.08637028407838443
KEIIILSCV	9	Unmodified	_KEIIILSCV_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-2|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.3058166503906	2	509.304278	1016.594	-0.42573	-0.00021683	3.8285	0.0019499	3.4027	0.001733	509.30608017634603	91.974	1.4257	91.851	91.414	92.84	-0.12241					104	33	5	0	0	0	0.87448	2	11296	11296;11308		34.173	0	1	3160300			30513	5262	21064	21104	35003;35004	35003					0.08637028407838443
KEIIILSCV	9	Unmodified	_KEIIILSCV_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-2|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.3062744140625	2	509.304278	1016.594	0.056026	2.8534E-05	3.3679	0.0017153	3.4239	0.0017438	509.30586273305124	92	1.5619	91.858	91.442	93.004	-0.14131					109	36	5	0	0	0	0.70156	1	11269	11269		45.972	1.5951	1	3302600			30514	5262	21064	21104	35005	35005					0.08637028407838443
KEIKLTQVF	9	Unmodified	_KEIKLTQVF_					0	0	0			REV__ENSG00000081870|ENST00000194214|IFT25	REV__ENSG00000081870|ENST00000194214|IFT25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.332275390625	2	553.334424	1104.6543	0.59374	0.00032854	-4.2368	-0.0023444	-3.6431	-0.0020159	553.3319086030377	95.481	1.1629	95.358	94.985	96.148	-0.12251					95	26	5	0	0	0	0.80003	1	11812	11812		39.253	10.103	1	4038100	+		30515	20685	21065	21105	35006	35006					0.10615462062560255
KEILRKVT	8	Unmodified	_KEILRKVT_					0	0	0			REV__ENST00000519354.1_1_17:15341092-15355857:-|nuORF	REV__ENST00000519354.1_1_17:15341092-15355857:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2785339355469	2	493.821484	985.628415	0.68727	0.00033939	-0.73122	-0.00036109	-0.043941	-2.1699E-05	493.8209427108984	19.992	0.48556	19.769	19.582	20.067	-0.22344					20	9	3	0	0	0	0.027866	1	492	492		27.882	0	1	105630	+		30516	28952	21066	21106	35007	35007					0.13502612610943743
KEILSYHS	8	Unmodified	_KEILSYHS_					0	0	0		ENST00000426431.2_1_12:53806226-53806493:+|nuORF	ENST00000426431.2_1_12:53806226-53806493:+|nuORF	ENST00000426431.2_1_12:53806226-53806493:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7683410644531	2	488.758549	975.502546	0.2646	0.00012932	0.35999	0.00017595	0.62458	0.00030527	488.7584823879762	67.951	1.2229	67.717	67.093	68.316	-0.23376					51	29	2	0	0	0	0.027866	1	7824	7824		30.504	9.5567	1	138500			30517	14086	21067	21107	35008	35008					0.013814810348549145
KEINALQWEI	10	Unmodified	_KEINALQWEI_					0	0	0		nc|ENSG00000183323|Q86Z20-2|CCDC125;ENSG00000183323|ENST00000396496|CCDC125	nc|ENSG00000183323|Q86Z20-2|CCDC125	nc|ENSG00000183323|Q86Z20-2|CCDC125	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.33642578125	2	622.337695	1242.66084	-0.54269	-0.00033774	-1.3233	-0.00082353	-1.866	-0.0011613	622.3367429399468	110.01	0.87253	110.01	109.85	110.73	0.0059204					89	28	4	0	0	0	1.0997	1	13874	13874		32.751	2.4328	1	2532400			30518	9217	21068	21108	35009	35009					0.0492135522326862
KEIQEKRES	9	Unmodified	_KEIQEKRES_					0	0	0		ENST00000332843.2_1_8:120079524-120116116:+|nuORF	ENST00000332843.2_1_8:120079524-120116116:+|nuORF	ENST00000332843.2_1_8:120079524-120116116:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.791015625	2	573.809302	1145.60405	-0.41057	-0.00023559	3.9057	0.0022411	3.4951	0.0020055	573.8114229588932	20.817	0.66976	20.712	20.375	21.045	-0.10477					29	13	3	0	0	0	0.024405	1	614	614		27.882	0	1	240730			30519	12363	21069	21109	35010	35010					0.037073076667638816
KEIQKDFLL	9	Unmodified	_KEIQKDFLL_					0	0	0		ENSG00000150990|ENST00000308736|DHX37;DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3302001953125	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	0.91321	1	11094	11094		31.53	1.0262	1	4116000			30520	6164	21070	21110	35011	35011					0.0881915819995811
KEIRVIKV	8	Unmodified	_KEIRVIKV_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7850341796875	2	492.831852	983.649151	-0.7465	-0.0003679	0.51024	0.00025146	-0.23626	-0.00011644	492.83180263941756	47.138	0.60919	47.197	46.88	47.489	0.059097					34	16	3	0	0	0	0.027866	1	4693	4693		42.396	0	1	208110	+		30521	20471	21071	21111	35012	35012					0.1566720299060762
KEISLWKD	8	Unmodified	_KEISLWKD_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7283020019531	2	509.782025	1017.5495	-0.27521	-0.0001403	0.3997	0.00020376	0.12449	6.3464E-05	509.7820885467928	54.925	0.80365	54.925	54.623	55.427	0					44	22	3	0	0	0	0.027866	1	6038	6038		42.396	0	1	1571700			30522	10311	21072	21112	35013	35013					0.04142340585997317
KEISLWKD	8	Unmodified	_KEISLWKD_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7287902832031	2	509.782025	1017.5495	-0.2444	-0.00012459	0.28529	0.00014544	0.040896	2.0848E-05	509.7820040638595	55.013	0.72495	54.863	54.574	55.299	-0.15036					46	20	4	0	0	0	0.027866	1	6027	6027		47.657	5.2612	1	1642700			30523	10311	21072	21112	35014	35014					0.04142340585997317
KEIVIDCKAD	10	Carbamidomethyl (C)	_KEIVIDC(Carbamidomethyl (C))KAD_	KEIVIDC(1)KAD		KEIVIDC(80)KAD		0	1	0			REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.806396484375	2	595.807913	1189.60127	-1.5615	-0.00093036	-1.7092	-0.0010184	-3.2707	-0.0019487	595.8069189349474	65.822	0.53661	65.609	65.338	65.874	-0.21327					34	12	3	0	0	0	0.56936	1	7544	7544		80.455	9.6384	1	1258300	+		30524	25560	21073	21113	35015	35015	338				0.014057162175731719
KEIVIDCKAD	10	Carbamidomethyl (C)	_KEIVIDC(Carbamidomethyl (C))KAD_					0	1	0			REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	595.807913	1189.60127	-1.5615	-0.00093036	-1.7092	-0.0010184	-3.2707	-0.0019487	595.8069189349474	65.822	0.53661	65.609	65.338	65.874	-0.21327	-0.019843	0.00060576	NaN	80.455	34	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1258300	+		30525	25560	21073	21113			338				0.014057162175731719
KEIVIDCKAD	10	Carbamidomethyl (C)	_KEIVIDC(Carbamidomethyl (C))KAD_					0	1	0			REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	595.807913	1189.60127	-0.81019	-0.00048272	-2.3215	-0.0013832	-3.1317	-0.0018659	595.8065505789369	65.895	0.57176	65.643	65.353	65.925	-0.25111	0.014723	-0.00012389	NaN	80.455	42	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1281400	+		30526	25560	21073	21113			338				0.014057162175731719
KEIVYPSID	9	Unmodified	_KEIVYPSID_					0	0	0		nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.816650390625	2	532.28714	1062.55973	-0.19156	-0.00010196	2.4301	0.0012935	2.2385	0.0011915	532.2880241339332	86.894	0.89561	86.894	86.214	87.109	0					27	20	2	0	0	0	0.024466	1	10894	10894		47.657	19.775	1	78436			30527	1263	21074	21114	35016	35016					0.030949035205594555
KEKEAHEI	8	Unmodified	_KEKEAHEI_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.82940673828125	2	492.261456	982.50836	-1.0045	-0.00049448	0.80537	0.00039645	-0.19914	-9.8029E-05	492.26176455795434	25.943	0.51306	25.779	25.588	26.101	-0.16331					26	14	3	0	0	0	0.027866	1	1266	1266		40.778	0	1	1180700	+		30528	25992	21075	21115	35017	35017					0.016405795465175288
KEKEKPFY	8	Unmodified	_KEKEKPFY_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENST00000543938.5_1_15:83328314-83349061:-|nuORF	nc|ENSG00000103723|Q13367-3|AP3B2	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7686157226562	2	534.78985	1067.56515	-0.57111	-0.00030542	2.3474	0.0012554	1.7763	0.00094994	534.7902913467555	36.443	2.21	36.443	35.492	37.702	0					98	59	3	0	0	0	0.027866	1	2982	2982		50.025	0	1	447440			30529	2525	21076	21116	35018	35018					0.034066271030496864
KEKFCLVPIQ	10	Unmodified	_KEKFCLVPIQ_					0	0	0			REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	402.8612060546875	3	402.230132	1203.66857	0.84211	0.00033872	2.4844	0.00099931	3.3265	0.001338	402.2310600958883	23.336	0.74253	23.336	23.123	23.866	0					41	17	3	0	0	0	0.03519	1	951	951		46.457	14.823	1	513230	+		30530	34476	21077	21117	35019	35019					0.07487791219205064
KEKFCLVPIQ	10	Unmodified	_KEKFCLVPIQ_					0	0	0			REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.8614196777344	3	402.230132	1203.66857	1.9452	0.0007824	1.0837	0.00043588	3.0288	0.0012183	402.2305908344778	23.202	1.3886	23.278	22.702	24.091	0.076241					70	31	4	0	0	0	0.03519	1	864	864		37.508	11.934	1	427240	+		30531	34476	21077	21117	35020	35020					0.07487791219205064
KEKGILSL	8	Unmodified	_KEKGILSL_					0	0	0			REV__ENST00000540494.5_1_2:10950480-10950507:-|nuORF	REV__ENST00000540494.5_1_2:10950480-10950507:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.2687072753906	2	444.28166	886.548768	-0.13613	-6.048E-05	0.33316	0.00014802	0.19703	8.7538E-05	444.281633735339	28.066	1.0906	27.914	27.649	28.74	-0.15195					38	26	3	0	0	0	0.027866	1	1690	1690		65.803	0	1	322340	+		30532	34748	21078	21118	35021	35021					0.10095545936962935
KEKGLQII	8	Unmodified	_KEKGLQII_					0	0	0			REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.7613525390625	2	464.794935	927.575317	-0.80779	-0.00037545	0.34432	0.00016004	-0.46346	-0.00021542	464.7949466696739	44.804	0.68839	44.705	44.431	45.12	-0.099445					37	17	3	0	0	0	0.027866	1	4236	4236		37.159	1.5408	1	1049600	+		30533	21672	21079	21119	35022	35022					0.1086323482828675
KEKGLQII	8	Unmodified	_KEKGLQII_					0	0	0			REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.7614440917969	2	464.794935	927.575317	-0.76011	-0.00035329	0.1286	5.9772E-05	-0.63151	-0.00029352	464.79487475788824	44.887	0.61987	44.676	44.436	45.056	-0.21109					32	15	3	0	0	0	0.027866	1	4251	4251		42.396	5.237	1	1043000	+		30534	21672	21079	21119	35023	35023					0.1086323482828675
KEKITFKY	8	Unmodified	_KEKITFKY_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	2	528.808042	1055.60153	-1.1324	-0.00059882	1.0006	0.00052912	-0.13181	-6.9702E-05	529.3109986441533	73.055	0.58037	73.055	72.782	73.362	0					19	14	2	0	0	0	0.027866	1	8936	8936		51.335	14.176	1	133080			30535	3346	21080	21120	35024	35024					0.07595503999755238
KEKIYFHR	8	Unmodified	_KEKIYFHR_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2874145507812	2	560.816733	1119.61891	0.77873	0.00043673	-0.64468	-0.00036155	0.13405	7.5176E-05	560.8162442023448	51.221	0.38958	51.11	50.859	51.249	-0.11163					25	9	3	0	0	0	0.027866	1	5226	5226		21.96	0	1	686740	+		30536	27110	21081	21121	35025	35025					0.06388844325419996
KEKKKQVQ	8	Unmodified	_KEKKKQVQ_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7547912597656	2	508.316566	1014.61858	-0.36019	-0.00018309	-0.8966	-0.00045576	-1.2568	-0.00063885	508.3160560550099	29.079	0.47124	29.157	28.979	29.45	0.078344					18	11	2	0	0	0	0.027866	1	1693	1693		49.442	3.4896	1	142550			30537	2053	21082	21122	35026	35026					0.1118542460557137
KEKKKVKP	8	Unmodified	_KEKKKVKP_					0	0	0			REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7844543457031	2	492.831852	983.649151	0.090782	4.474E-05	-0.47837	-0.00023576	-0.38759	-0.00019102	492.8314965257188	47.227	0.56764	47.227	46.93	47.497	0					23	15	2	0	0	0	0.027866	1	4762	4762		44.117	6.9577	1	300230	+		30538	35687	21083	21123	35027	35027					0.1566720299060762
KEKKKVKP	8	Unmodified	_KEKKKVKP_					0	0	0			REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7847595214844	2	492.831852	983.649151	0.41258	0.00020333	-0.98782	-0.00048683	-0.57523	-0.00028349	492.83127841691663	47.317	0.61851	47.164	46.858	47.476	-0.15301					30	16	2	0	0	0	0.027866	1	4763	4763		38.806	6.8513	1	250980	+		30539	35687	21083	21123	35028	35028					0.1566720299060762
KEKKLNQQKWR	11	Unmodified	_KEKKLNQQKWR_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.9586486816406	3	495.959803	1484.85758	0.11895	5.8993E-05	-1.2923	-0.00064093	-1.1734	-0.00058194	495.9586334061718	102.37	1.6075	102.2	101.47	103.08	-0.17178					122	38	5	0	0	0	1.0811	1	12703	12703		16.53	0.52308	1	585730	+		30540	22949	21084	21124	35029	35029					0.13454579836866287
KEKKQKPVL	9	Unmodified	_KEKKQKPVL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3071899414062	2	549.355691	1096.69683	-0.47918	-0.00026324	-0.39365	-0.00021625	-0.87283	-0.00047949	549.3554851856105	52.152	0.37344	52.152	51.977	52.351	0					12	9	2	0	0	0	0.024319	1	5602	5602		47.657	9.8458	1	114640			30541	4214	21085	21125	35030	35030					0.15234857190785078
KEKKQKPVL	9	Unmodified	_KEKKQKPVL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.328125	2	549.355691	1096.69683	-0.43221	-0.00023744	0.072716	3.9947E-05	-0.3595	-0.00019749	549.3558214131291	52.298	0.33718	52.151	51.95	52.287	-0.14735					11	8	2	0	0	0	0.024389	1	5566	5566		51.193	3.2771	1	107590			30542	4214	21085	21125	35031	35031					0.15234857190785078
KEKNIKKALSH	11	Unmodified	_KEKNIKKALSH_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4;nc|ENSG00000169933|Q14CM0|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	648.3958129882812	2	648.393336	1294.77212	0.47482	0.00030787	-1.3387	-0.00086798	-0.86385	-0.00056011	648.3923824203447	105.47	0.6409	105.47	105.15	105.79	-0.00049591					50	19	4	0	0	0	1.0344	1	13452	13452		29.17	3.596	1	1256900			30543	7992	21086	21126	35032	35032					0.13652414651210165
KEKPKKEV	8	Unmodified	_KEKPKKEV_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2873840332031	2	493.305667	984.596781	-1.2235	-0.00060354	0.83132	0.0004101	-0.39214	-0.00019344	493.30594086313374	22.027	0.28764	22.098	21.978	22.266	0.071487					6	5	2	0	0	0	0.027866	1	694	694		32.812	0	1	17176			30544	4541	21087	21127	35033	35033					0.10386619857001733
KEKQQKSEL	9	Unmodified	_KEKQQKSEL_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2656860351562	2	559.31422	1116.61389	0.22013	0.00012312	-2.9153	-0.0016306	-2.6952	-0.0015074	559.3120717396015	79.58	1.2491	79.36	78.748	79.997	-0.21922					61	29	3	0	0	0	0.024025	1	9593	9593		71.877	0	1	1148700			30545	8043	21088	21128	35034	35034					0.060244956721589915
KEKRDKKP	8	Unmodified	_KEKRDKKP_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3025512695312	2	514.81419	1027.61383	0.62349	0.00032098	4.2628	0.0021945	4.8863	0.0025155	514.8140843447709	96.351	0.25299	96.353	96.233	96.486	0.0020752					8	5	2	0	0	0	0.027866	1	12204	12204		45.952	5.1738	1	32330			30546	3602	21089	21129	35035	35035					0.1011254046279646
KEKRFHDQI	9	Unmodified	_KEKRFHDQI_					0	0	0		nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;NIPBL-SPEF2|2|fusion;ENST00000503074.1_1_5:35659153-35697983:+|nuORF;nc|ENSG00000152582|Q9C093-3|SPEF2;NIPBL-SPEF2|1|fusion	nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.8879089355469	3	400.887645	1199.64111	0.68709	0.00027545	-0.41648	-0.00016696	0.27061	0.00010848	400.8873339062526	22.923	0.76864	22.732	22.479	23.248	-0.19117					37	16	4	0	0	0	0.64897	1	839	839		49.536	1.3481	1	585210			30547	6283	21090	21130	35036	35036					0.04927024003177394
KEKTQGQVK	9	Unmodified	_KEKTQGQVK_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3179931640625	2	523.303655	1044.59276	0.21764	0.00011389	0.49678	0.00025997	0.71442	0.00037386	523.3039989844351	18.342	0.24779	18.138	17.965	18.212	-0.20371					7	4	2	0	0	0	0.024511	1	285	285		19.104	0	1	47264			30548	8836	21091	21131	35037	35037					0.07224530363282611
KEKVKLLI	8	Unmodified	_KEKVKLLI_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000393501.5_1_3:124103736-124207203:+|nuORF;ENST00000494648.1_1_3:124174014-124181481:+|nuORF	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.8367004394531	2	485.836603	969.658653	-1.0033	-0.00048742	0.8919	0.00043332	-0.11137	-5.4106E-05	485.8369188835123	33.741	1.1476	33.566	33.226	34.374	-0.17557					70	28	4	0	0	0	0.91239	1	2443	2443		50.025	0	1	4470500			30549	6785	21092	21132	35038	35038					0.1726097127615276
KEKVLIVK	8	Unmodified	_KEKVLIVK_					0	0	0			REV__ENST00000556836.1_1_14:105241211-105241541:-|nuORF	REV__ENST00000556836.1_1_14:105241211-105241541:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.732421875	2	478.828778	955.643003	0.12695	6.0787E-05	-0.50607	-0.00024232	-0.37912	-0.00018153	478.8285423828188	39.353	0.33389	39.128	38.983	39.317	-0.2257					14	8	2	0	0	0	0.027866	1	3293	3293		24.203	0	1	109140	+		30550	24145	21093	21133	35039	35039					0.16340684759086344
KEKVRSLKP	9	Unmodified	_KEKVRSLKP_					0	0	0			REV__KIF4A|p.P1027L|1|0.13|ENSG00000090889|chrX:70406900-70406900|C/T|missense_variant	REV__KIF4A|p.P1027L|1|0.13|ENSG00000090889|chrX:70406900-70406900|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3374633789062	2	542.84549	1083.67643	-0.89994	-0.00048853	3.8899	0.0021116	2.99	0.0016231	542.8474442513061	49.152	0.64914	48.999	48.756	49.405	-0.15276					35	17	3	0	0	0	0.024539	1	5001	5001		27.882	0	1	474190	+		30551	36184	21094	21134	35040	35040					0.1379368653099391
KEKVRSPKP	9	Unmodified	_KEKVRSPKP_					0	0	0			REV__ENSG00000090889|ENST00000374403|KIF4A;REV__nc|ENSG00000090889|O95239-2|KIF4A	REV__nc|ENSG00000090889|O95239-2|KIF4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7686157226562	2	534.82984	1067.64513	0.20087	0.00010743	-1.7154	-0.00091747	-1.5146	-0.00081004	534.8286978444211	36.948	0.32052	36.948	36.685	37.005	0					9	7	2	0	0	0	0.024323	1	2982	2982		35.618	0	1	29895	+		30552	20888;36505	21095	21135	35041	35041					0.1140111349691324
KELAKLVN	8	Unmodified	_KELAKLVN_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.80511474609375	2	457.78711	913.559667	0.61811	0.00028296	0.18135	8.3019E-05	0.79945	0.00036598	457.7867252732381	69.512	0.37623	69.219	69.01	69.386	-0.29291					16	9	2	0	0	0	0.027866	1	8354	8354		29.15	2.4566	1	138500	+		30553	24417	21096	21136	35042	35042					0.09942948311231703
KELAKLVN	8	Unmodified	_KELAKLVN_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.78711	913.559667	-0.097061	-4.4433E-05	0.017528	8.0242E-06	-0.079533	-3.6409E-05	457.78682654510953	69.261	0.4128	69.276	69.014	69.426	0.015121	0.16031	-0.00012598	NaN	29.15	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130730	+		30554	24417	21096	21136							0.09942948311231703
KELAKLVN	8	Unmodified	_KELAKLVN_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.78711	913.559667	0.21776	9.9689E-05	0.47069	0.00021548	0.68845	0.00031517	457.78622600661095	69.096	0.20953	68.853	68.748	68.958	-0.24277	-0.26329	0.00028892	NaN	29.15	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32777	+		30555	24417	21096	21136							0.09942948311231703
KELAVRIVV	9	Unmodified	_KELAVRIVV_					0	0	0		TRMT1L|p.A432V|1|0.12|ENSG00000121486|chr1:185139394-185139394|G/A|missense_variant	TRMT1L|p.A432V|1|0.12|ENSG00000121486|chr1:185139394-185139394|G/A|missense_variant	TRMT1L|p.A432V|1|0.12|ENSG00000121486|chr1:185139394-185139394|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7902221679688	2	513.837134	1025.65972	-0.42164	-0.00021666	-1.0104	-0.00051917	-1.432	-0.00073583	513.8364958533289	61.503	0.45923	61.574	61.355	61.814	0.071129					14	11	2	0	0	0	0.024457	1	7041	7041		37.159	8.0096	1	63721			30556	38106	21097	21137	35043	35043					0.14791185645049154
KELCVEIAD	9	Unmodified	_KELCVEIAD_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1;REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7719421386719	2	510.257525	1018.5005	0.53443	0.0002727	-3.8604	-0.0019698	-3.326	-0.0016971	510.25529911815676	84.4	0.59695	84.241	83.976	84.573	-0.15869					21	13	2	0	0	0	0.024319	1	10229	10229		47.657	12.039	1	277440	+		30557	26717;21417	21098	21138	35044	35044					-0.008013157652840164
KELDVQMKKK	10	Unmodified	_KELDVQMKKK_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2315979003906	3	416.244441	1245.71149	0.27802	0.00011572	-3.9823	-0.0016576	-3.7043	-0.0015419	416.2431051205788	21.073	0.44244	20.877	20.73	21.172	-0.19577					13	8	2	0	0	0	0.03519	1	604	604		19.263	0	1	24420	+		30558	23899	21099	21139	35045	35045					0.09846561276617649
KELDWPGQL	9	Unmodified	_KELDWPGQL_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3370361328125	2	543.284931	1084.55531	-1.0543	-0.00057277	-2.7599	-0.0014994	-3.8141	-0.0020722	543.7843162588765	48.29	0.37662	48.29	48.14	48.516	0					14	10	2	0	0	0	0.018452	1	4949	4949		122.18	3.4329	1	122980	+		30559	26954	21100	21140	35046	35046					0.016414390976706272
KELFIHTE	8	Unmodified	_KELFIHTE_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.77191162109375	2	508.7742	1015.53385	-0.54006	-0.00027477	-1.8697	-0.00095127	-2.4098	-0.001226	508.77200365050044	33.945	1.2	33.945	33.626	34.826	0					58	30	3	0	0	0	0.68535	1	2504	2504		68.485	2.0554	1	5734900			30560	2546	21101	21141	35047	35047					0.026700540689375885
KELFRKLK	8	Unmodified	_KELFRKLK_					0	0	0			REV__ENST00000367097.7_1_6:158931717-158931981:+|nuORF	REV__ENST00000367097.7_1_6:158931717-158931981:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2904052734375	2	531.345126	1060.6757	-0.88085	-0.00046803	-1.2096	-0.00064269	-2.0904	-0.0011107	531.3443455020507	55.268	0.16662	55.122	55.022	55.188	-0.14609					7	4	2	0	0	0	0.027866	1	5932	5932		27.882	7.4004	1	123070	+		30561	31003	21102	21142	35048	35048					0.14778891881928757
KELHLFDI	8	Unmodified	_KELHLFDI_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.78466796875	2	507.784567	1013.55458	0.23321	0.00011842	-0.47251	-0.00023994	-0.23931	-0.00012152	507.78429752818664	73.015	1.1431	72.734	72.385	73.528	-0.28124					68	28	4	0	0	0	0.6536	1	8869	8869		71.296	0	1	5691900			30562	9617	21103	21143	35049	35049					0.04834644448601466
KELIHFEV	8	Unmodified	_KELIHFEV_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7845458984375	2	507.784567	1013.55458	0.2616	0.00013284	-0.41506	-0.00021076	-0.15345	-7.7922E-05	507.78429261693026	72.74	1.1878	72.749	72.331	73.519	0.0096512					69	29	4	0	0	0	0.53523	1	8774	8774		82.305	2.854	1	4612600			30563	10844	21104	21144	35050	35050					0.04834644448612835
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3455200195312	2	575.347532	1148.68051	-1.1631	-0.00066918	-2.3888	-0.0013744	-3.5519	-0.0020436	575.3460130844637	97.061	1.8236	97.061	96.615	98.439	0					112	41	5	0	0	0	1.0997	1	12368	12368		32.751	4.8683	1	3789000	+		30564	19677	21105	21145	35051	35051					0.11211731234061517
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3455200195312	2	575.347532	1148.68051	0.60113	0.00034586	-4.2399	-0.0024394	-3.6388	-0.0020935	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	1.1333	1	12351	12351		28.081	2.5074	1	3650400	+		30565	19677	21105	21145	35052	35052					0.11211731234061517
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3453979492188	2	575.347532	1148.68051	0.52304	0.00030093	-4.1315	-0.0023771	-3.6085	-0.0020761	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	1.0997	2	12292	12292;12316		32.751	6.0576	1	4068000	+		30566	19677	21105	21145	35053;35054	35053					0.11211731234061517
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.345458984375	2	575.347532	1148.68051	0.86329	0.00049669	-4.3754	-0.0025174	-3.5122	-0.0020207	575.3449012149558	97.098	1.2775	96.961	96.613	97.89	-0.13671					99	28	5	0	0	0	0.98527	2	12001	12001;12013		47.96	16.43	1	3730600	+		30567	19677	21105	21145	35055;35056	35055					0.11211731234061517
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.345703125	2	575.347532	1148.68051	0.72586	0.00041762	-4.1243	-0.0023729	-3.3984	-0.0019553	575.345019698839	97.117	1.277	96.993	96.572	97.849	-0.12368					101	28	5	0	0	0	1.0816	3	12004	12004;12015;12039		35.152	4.8683	1	3498400	+		30568	19677	21105	21145	35057;35058;35059	35057					0.11211731234061517
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	REV__nc|ENSG00000144535|Q8IYB7-3|DIS3L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.3457641601562	2	575.347532	1148.68051	-0.38186	-0.0002197	-3.0769	-0.0017703	-3.4588	-0.00199	575.3456405295979	97.221	1.199	97.06	96.639	97.838	-0.16106					88	26	5	0	0	0	1.0639	4	12030	12006;12018;12030;12042		37.508	10.815	1	4066100	+		30569	19677	21105	21145	35060;35061;35062;35063	35062					0.11211731234061517
KELKKITE	8	Unmodified	_KELKKITE_					0	0	0			REV__nc|ENSG00000082512|O00463-2|TRAF5	REV__nc|ENSG00000082512|O00463-2|TRAF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.23577880859375	2	494.8055	987.596446	-0.48603	-0.00024049	0.3554	0.00017586	-0.13062	-6.4634E-05	494.8053888834389	22.719	0.36839	22.534	22.369	22.738	-0.18539					14	7	3	0	0	0	0.027866	1	828	828		23.042	3.6825	1	65092	+		30570	36487	21106	21146	35064	35064					0.10215200137133706
KELKLPSYK	9	Unmodified	_KELKLPSYK_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.3322143554688	2	553.334424	1104.6543	-0.076569	-4.2368E-05	-3.3934	-0.0018777	-3.4699	-0.00192	553.3323919260035	95.322	1.2671	95.325	94.957	96.224	0.0033798					89	29	4	0	0	0	0.91321	1	12105	12105		31.53	2.3598	1	4391700			30571	2838	21107	21147	35065	35065					0.10615462062560255
KELKLPSYK	9	Unmodified	_KELKLPSYK_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.3317260742188	2	553.334424	1104.6543	-0.10787	-5.9689E-05	-3.4609	-0.001915	-3.5688	-0.0019747	553.3323260230788	95.491	1.2442	95.354	94.938	96.182	-0.13689					88	28	5	0	0	0	0.91168	1	11751	11751		31.634	1.3165	1	4161900			30572	2838	21107	21147	35066	35066					0.10615462062560255
KELLKTEID	9	Unmodified	_KELLKTEID_					0	0	0		nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	nc|ENSG00000122008|Q9UBT6-8|POLK	nc|ENSG00000122008|Q9UBT6-8|POLK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7898559570312	2	544.813522	1087.61249	-0.19589	-0.00010672	-2.9479	-0.0016061	-3.1438	-0.0017128	544.8117564881568	33.277	0.39171	33.333	33.07	33.461	0.056572					16	10	2	0	0	0	0.024457	1	2353	2353		15.642	0.77694	1	168980			30573	3905	21108	21148	35067	35067					0.07218861583373837
KELLRRTL	8	Unmodified	_KELLRRTL_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7897338867188	2	514.832383	1027.65021	-0.79893	-0.00041131	2.7235	0.0014021	1.9246	0.00099082	514.8340584548118	52.151	0.67065	52.243	52.003	52.674	0.091942					29	16	3	0	0	0	0.027866	1	5520	5520		53.351	0	1	167260	+		30574	27265	21109	21149	35068	35068					0.13749417359508698
KELQKGPFV	9	Unmodified	_KELQKGPFV_					0	0	0			REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3038940429688	2	523.305667	1044.59678	-0.39586	-0.00020716	-3.9089	-0.0020455	-4.3047	-0.0022527	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.80003	1	10771	10771		39.253	3.6345	1	14072000	+		30575	31640	21110	21150	35069	35069					0.0762661985700106
KELQKGPFV	9	Unmodified	_KELQKGPFV_					0	0	0			REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	REV__ENST00000393357.6_1_1:114301314-114301644:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3045654296875	2	523.305667	1044.59678	0.29692	0.00015538	-4.2942	-0.0022472	-3.9973	-0.0020918	523.3032989158403	89.717	0.56227	89.58	89.273	89.836	-0.13761					34	12	3	0	0	0	0.62163	1	10929	10929		51.335	1.8939	1	910160	+		30576	31640	21110	21150	35070	35070					0.0762661985700106
KELQKKQQL	9	Unmodified	_KELQKKQQL_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.8479614257812	2	571.84823	1141.68191	1.4109	0.00080681	-1.826	-0.0010442	-0.41511	-0.00023738	571.8470615765085	18.598	0.54016	18.598	18.382	18.922	0					28	10	4	0	0	0	0.16638	1	300	300		95.815	5.2143	1	253360			30577	7698	21111	21151	35071	35071					0.11673365322803875
KELRFKTKREF	11	Unmodified	_KELRFKTKREF_					0	0	0		ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2864685058594	3	494.624421	1480.85143	-1.0704	-0.00052943	2.9578	0.001463	1.8875	0.00093358	494.62584225061937	51.676	0.42094	51.407	51.163	51.584	-0.26903					14	10	2	0	0	0	0.024801	1	5307	5307		12.957	2.8536	1	145410			30578	1560	21112	21152	35072	35072					0.13024061605324277
KELRKVLHGN	10	Unmodified	_KELRKVLHGN_					0	0	0			REV__ENST00000478958.5_1_2:238678415-238688172:+|nuORF	REV__ENST00000478958.5_1_2:238678415-238688172:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.3601684570312	2	597.359296	1192.70404	-0.42325	-0.00025283	-0.64435	-0.00038491	-1.0676	-0.00063774	597.3586803270889	98.534	1.7211	98.544	98.105	99.827	0.010239					111	39	4	0	0	0	1.1246	1	12568	12568		23.523	0	1	2936700	+		30579	22794	21113	21153	35073	35073					0.11539589791209437
KELRNKNK	8	Unmodified	_KELRNKNK_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__UBE3C-PTPRN2|1|fusion	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3125	2	515.311815	1028.60908	-0.10516	-5.4188E-05	-0.83854	-0.00043211	-0.94369	-0.0004863	515.3114395138941	20.054	1.0676	19.887	19.62	20.688	-0.16774					64	21	5	0	0	0	0.81662	1	522	522		57.811	2.3071	1	8123500	+		30580	24992;37751	21114	21154	35074	35074					0.09591656320026232
KELRPQPVP	9	Unmodified	_KELRPQPVP_					0	0	0			REV__ENST00000216962.8_1_20:25278065-25278461:+|nuORF	REV__ENST00000216962.8_1_20:25278065-25278461:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2947387695312	2	532.316566	1062.61858	0.17064	9.0834E-05	0.8251	0.00043921	0.99574	0.00053005	532.3165911290715	97.206	1.8165	97.215	95.778	97.594	0.0089111					52	41	2	0	0	0	0.024367	1	12252	12252		62.107	3.3255	1	228690	+		30581	29325	21115	21155	35075	35075					0.0897742460556401
KELRSEFAAPD	11	Unmodified	_KELRSEFAAPD_					0	0	0			REV__ENST00000474020.5_1_1:47118240-47133739:-|nuORF	REV__ENST00000474020.5_1_1:47118240-47133739:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	631.7882080078125	2	631.822409	1261.63027	-0.60039	-0.00037934	0.1689	0.00010672	-0.43149	-0.00027262	631.8228834983604	54.208	0.21032	53.963	53.862	54.073	-0.2453					8	6	2	0	0	0	0.024736	1	5733	5733		11.636	0	1	138230	+		30582	22699	21116	21156	35076	35076					0.009915768382370516
KELSKGVE	8	Unmodified	_KELSKGVE_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.2685852050781	2	445.2531	888.491647	-0.89415	-0.00039812	2.8348	0.0012622	1.9406	0.00086407	445.2541771195295	28.584	0.62635	28.584	28.151	28.778	0					38	14	3	0	0	0	0.027866	1	1701	1701		24.203	0	1	445330			30583	5653	21117	21157	35077	35077					0.04294078660575451
KELSTLLKN	9	Unmodified	_KELSTLLKN_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2982788085938	2	523.316232	1044.61791	0.5634	0.00029484	3.2111	0.0016804	3.7745	0.0019752	523.3171482372964	87.228	0.58771	87.249	86.803	87.391	0.021263					14	13	2	0	0	0	0.018299	1	10846	10846		141.52	29.872	1	93001			30584	6342	21118	21158	35078	35078					0.09738585165860059
KELSVLSL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KELSVLSL_					1	0	0		ENSG00000197457|ENST00000370053|STMN3;nc|ENSG00000197457|Q9NZ72-2|STMN3;STMN3|p.N125Kfs*2|1|0.16|ENSG00000197457|chr20:63642216-63642217|-/T|frameshift_variant	ENSG00000197457|ENST00000370053|STMN3	ENSG00000197457|ENST00000370053|STMN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7772521972656	2	465.778951	929.543348	-0.64033	-0.00029825	-2.3092	-0.0010756	-2.9496	-0.0013738	465.7778115254298	80.676	2.2634	80.676	79.077	81.341	0					120	54	3	0	0	0	0.91239	1	9983	9983		50.025	7.5501	1	1014200			30585	10002	21119	21159	35079	35079					0.07575822354465345
KELSYPPSE	9	Unmodified	_KELSYPPSE_					0	0	0			REV__ENSG00000158234|ENST00000360570|FAIM	REV__ENSG00000158234|ENST00000360570|FAIM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2791748046875	2	525.261122	1048.50769	-0.42391	-0.00022266	-0.22602	-0.00011872	-0.64993	-0.00034138	525.2624052302388	87.148	1.0211	87.148	86.3	87.321	0					30	23	3	0	0	0	0.024397	1	10964	10964		39.253	0	1	108690	+		30586	25182	21120	21160	35080	35080					-0.014622598931964603
KELVRKEN	8	Unmodified	_KELVRKEN_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76422119140625	2	508.298373	1014.58219	-0.44145	-0.00022439	-0.75731	-0.00038494	-1.1988	-0.00060933	508.29795795929874	22.205	0.56973	22.13	21.841	22.411	-0.075294					23	10	3	0	0	0	0.027866	1	745	745		55.504	13.108	1	91860	+		30587	36472	21121	21161	35081	35081					0.07548547708847764
KELYRVFQKCW	11	Unmodified	_KELYRVFQKCW_					0	0	0		nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL;ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL	nc|ENSG00000102445|Q9H714-3|RUBCNL	nc|ENSG00000102445|Q9H714-3|RUBCNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7684020996094	3	500.599107	1498.77549	-0.34	-0.0001702	0.52798	0.00026431	0.18798	9.4104E-05	500.599461711226	43.119	0.3824	42.882	42.679	43.061	-0.23736					16	9	2	0	0	0	0.024856	1	3937	3937		13.508	0.55046	1	107140			30588	2408	21122	21162	35082	35082					0.04605341433580179
KEMATMKEEF	10	Oxidation (M)	_KEMATM(Oxidation (M))KEEF_		KEM(0.047)ATM(0.953)KEEF		KEM(-13)ATM(13)KEEF	0	0	1		ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000125414|ENST00000245503|MYH2;ENSG00000197616|ENST00000405093|MYH6	ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	630.2919311523438	2	630.285956	1258.55736	4.6411	0.0029252	4.3333	0.0027312	8.9744	0.0056565	630.2886215362796	17.356	0.44357	17.106	16.928	17.371	-0.25049					22	8	4	0	0	0	0.96822	1	144	144		49.536	20.366	2	205520			30589	10024;4669;2957	21123	21163	35083	35083		110			-0.06157636271063893
KEMEGPLK	8	Oxidation (M)	_KEM(Oxidation (M))EGPLK_		KEM(1)EGPLK		KEM(88)EGPLK	0	0	1			REV__ENSG00000143353|ENST00000366928|LYPLAL1;REV__ENST00000463964.5_1_1:219347256-219385067:+|nuORF	REV__ENSG00000143353|ENST00000366928|LYPLAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.24481201171875	2	474.24696	946.479368	0.61346	0.00029093	-4.0669	-0.0019287	-3.4534	-0.0016378	474.24492533169257	45.628	0.98236	45.628	45.181	46.163	0					79	28	4	0	0	0	0.47727	1	4462	4462		87.696	18.85	1	3335500	+		30590	24230;32956	21124	21164	35084	35084		718			0.003987189258964463
KEMKREGE	8	Unmodified	_KEMKREGE_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.27392578125	2	503.752941	1005.49133	-0.40195	-0.00020248	0.69855	0.0003519	0.2966	0.00014941	503.7517725184492	26.798	0.51185	26.63	26.339	26.851	-0.16816					15	11	2	0	0	0	0.027866	1	1437	1437		47.657	0	1	30736	+		30591	20838	21125	21165	35085	35085					-0.01119664330917658
KEMKRGKE	8	Unmodified	_KEMKRGKE_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2743835449219	2	503.279126	1004.5437	-0.84145	-0.00042349	1.5917	0.00080106	0.75023	0.00037758	503.27978145071455	26.881	0.33727	26.724	26.464	26.802	-0.15664					12	7	2	0	0	0	0.027866	1	1411	1411		40.778	7.9657	1	171480			30592	7277	21126	21166	35086	35086					0.04160918802688229
KEMTEIEKY	9	Unmodified	_KEMTEIEKY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.7888793945312	2	585.789189	1169.56383	-0.37792	-0.00022138	-0.37041	-0.00021698	-0.74833	-0.00043836	585.7892502041533	33.936	0.85405	33.712	33.404	34.258	-0.22412					83	21	5	0	0	0	0.043667	1	2458	2458		131.03	4.7888	1	3853700			30593	4933	21127	21167	35087	35087					-0.014173750480040326
KEMTEIEKY	9	Unmodified	_KEMTEIEKY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.7891845703125	2	585.789189	1169.56383	-1.0884	-0.00063756	0.14758	8.6448E-05	-0.9408	-0.00055111	585.7896189604778	33.856	0.92377	33.656	33.325	34.249	-0.20019					81	23	6	0	0	0	0.062622	2	2431	2431;2441		124.08	9.1855	1	4535200			30594	4933	21127	21167	35088;35089	35088					-0.014173750480040326
KEMTEIEKY	9	Unmodified	_KEMTEIEKY_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.7891235351562	2	585.789189	1169.56383	-1.8317	-0.001073	1.018	0.00059632	-0.81372	-0.00047667	585.7900788339412	33.83	1.1055	33.655	33.268	34.374	-0.17557					91	27	5	0	0	0	0.31037	1	2455	2455		74.255	2.9593	1	4126600			30595	4933	21127	21167	35090	35090					-0.014173750480040326
KENDIKPL	8	Unmodified	_KENDIKPL_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.77423095703125	2	478.7742	955.533846	0.16026	7.6729E-05	-0.029013	-1.3891E-05	0.13125	6.2839E-05	478.774129135444	31.407	1.5005	31.166	30.753	32.253	-0.24109					90	36	4	0	0	0	0.34573	1	2071	2071		104.75	16.992	1	7445600			30596	5690	21128	21168	35091	35091					0.054300540689382615
KENDIKPL	8	Unmodified	_KENDIKPL_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.77392578125	2	478.7742	955.533846	-0.38003	-0.00018195	0.34812	0.00016667	-0.031903	-1.5274E-05	478.7743026870801	31.337	1.6412	31.152	30.702	32.343	-0.18503					91	39	4	0	0	0	0.25873	2	2086	2073;2086		129.68	30.308	1	9351300			30597	5690	21128	21168	35092;35093	35093					0.054300540689382615
KENDIKPL	8	Unmodified	_KENDIKPL_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7741394042969	2	478.7742	955.533846	-0.19848	-9.5027E-05	0.058004	2.7771E-05	-0.14048	-6.7256E-05	478.77420061038595	31.364	1.5626	31.211	30.887	32.449	-0.15231					105	38	4	0	0	0	0.34573	2	2068	2045;2068		104.75	11.551	1	10664000			30598	5690	21128	21168	35094;35095	35095					0.054300540689382615
KENEFSCEVC	10	Unmodified	_KENEFSCEVC_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.2640991210938	2	594.239006	1186.46346	-0.5198	-0.00030888	2.8028	0.0016655	2.283	0.0013566	594.2406953329469	47.231	0.17957	46.961	46.908	47.087	-0.26939					8	4	2	0	0	0	0.03519	1	4587	4587		26.693	5.746	1	180510			30599	8220	21129	21169	35096	35096					-0.12231355373342012
KENERWNVI	9	Unmodified	_KENERWNVI_					0	0	0		nc|ENSG00000134440|O43776-2|NARS1;ENST00000587366.1_1_18:55280911-55288994:-|nuORF;ENST00000411676.6_1_18:55274615-55283204:-|nuORF;ENSG00000134440|ENST00000256854|NARS1	nc|ENSG00000134440|O43776-2|NARS1	nc|ENSG00000134440|O43776-2|NARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	594.264404296875	2	594.312012	1186.60947	-0.52898	-0.00031438	2.1558	0.0012812	1.6268	0.00096684	594.3128632981277	46.849	0.1074	46.753	46.682	46.789	-0.096653					4	2	2	0	0	0	0.024523	1	4546	4546		21.96	0	1	45472			30600	18287	21130	21170	35097	35097					0.023630312492286976
KENLFAKPL	9	Unmodified	_KENLFAKPL_					0	0	0			REV__nc|ENSG00000132437|P20711-2|DDC	REV__nc|ENSG00000132437|P20711-2|DDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2905883789062	2	530.313492	1058.61243	0.29118	0.00015441	1.8371	0.00097423	2.1283	0.0011286	530.3140463416465	55.415	0.25225	55.415	55.284	55.536	0					13	6	3	0	0	0	0.024288	1	6106	6106		62.107	5.3864	1	96927	+		30601	23280	21131	21171	35098	35098					0.08546906374044738
KENPNEKKL	9	Unmodified	_KENPNEKKL_					0	0	0		ENSG00000242120|ENST00000567252|MDFIC2;nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2	ENSG00000242120|ENST00000567252|MDFIC2	ENSG00000242120|ENST00000567252|MDFIC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3064575195312	2	550.308938	1098.60332	-0.27588	-0.00015182	-0.12231	-6.7308E-05	-0.39819	-0.00021913	550.3087960744335	52.338	1.0355	52.191	51.95	52.985	-0.14735					64	26	4	0	0	0	0.22902	1	5609	5609		85.161	2.9203	1	3971000			30602	10792	21132	21172	35099	35099					0.05796513017708094
KENPNEKKL	9	Unmodified	_KENPNEKKL_					0	0	0		ENSG00000242120|ENST00000567252|MDFIC2;nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2	ENSG00000242120|ENST00000567252|MDFIC2	ENSG00000242120|ENST00000567252|MDFIC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3060913085938	2	550.308938	1098.60332	-0.75794	-0.0004171	0.46246	0.00025449	-0.29548	-0.0001626	550.3090695380375	52.196	1.0823	52.288	51.93	53.013	0.091942					62	27	3	0	0	0	0.14181	1	5501	5501		101.25	13.076	1	2160500			30603	10792	21132	21172	35100	35100					0.05796513017708094
KENQVIVRM	9	Unmodified	_KENQVIVRM_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.2754516601562	2	558.813333	1115.61211	-0.21399	-0.00011958	-3.1924	-0.001784	-3.4064	-0.0019035	558.8114518179926	31.33	0.65494	31.398	30.912	31.567	0.068962					24	15	2	0	0	0	0.024427	1	2028	2028		51.335	22.165	1	45999			30604	2568	21133	21173	35101	35101					0.05893163382529565
KENVEERFH	9	Unmodified	_KENVEERFH_					0	0	0			REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.2640991210938	2	594.293819	1186.57309	-0.53346	-0.00031703	-0.37826	-0.0002248	-0.91172	-0.00054183	594.2959276845918	47.209	0.28851	46.94	46.837	47.125	-0.26939					12	7	2	0	0	0	0.024495	1	4587	4587		34.173	0	1	151460	+		30605	34296	21134	21174	35102	35102					-0.012738456474835402
KENVQGPKCD	10	Unmodified	_KENVQGPKCD_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.7382202148438	2	559.268955	1116.52336	-0.22307	-0.00012476	3.8988	0.0021805	3.6757	0.0020557	559.7713015065887	61.296	0.60771	61.09	60.734	61.341	-0.20599					22	14	2	0	0	0	0.03519	1	6854	6854		17.468	0	1	80450			30606	4441	21135	21175	35103	35103					-0.030242966477771915
KEPENHQGR	9	Unmodified	_KEPENHQGR_					0	0	0		ENST00000494033.1_1_7:27809312-27811578:+|nuORF	ENST00000494033.1_1_7:27809312-27811578:+|nuORF	ENST00000494033.1_1_7:27809312-27811578:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.811767578125	2	547.770511	1093.52647	-0.98814	-0.00054127	0.98323	0.00053858	-0.0049089	-2.6889E-06	548.2710481499093	46.84	0.30307	46.892	46.758	47.061	0.051395					12	7	2	0	0	0	0.024323	1	4594	4594		35.618	0	1	117390			30607	15516	21136	21176	35104	35104					-0.01655285478773294
KEPFPRHL	8	Unmodified	_KEPFPRHL_					0	0	0			REV__ENST00000607453.1_1_1:245132959-245133256:-|nuORF	REV__ENST00000607453.1_1_1:245132959-245133256:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2832641601562	2	512.290351	1022.56615	-1.1108	-0.00056905	1.7779	0.00091079	0.66709	0.00034174	512.2913243667688	61.928	0.31648	61.991	61.771	62.087	0.062767					11	8	2	0	0	0	0.027866	1	7118	7118		33.516	15.191	1	184890	+		30608	35952	21137	21177	35105	35105					0.05576886262599601
KEPHGWVV	8	Unmodified	_KEPHGWVV_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.2376708984375	2	476.255977	950.497401	0.23804	0.00011337	3.0331	0.0014445	3.2711	0.0015579	476.25744602971724	32.839	0.4061	32.647	32.457	32.863	-0.19261					13	9	2	0	0	0	0.027866	1	2281	2281		28.254	1.4582	1	82739			30609	6938	21138	21178	35106	35106					0.020172219628989296
KEPHGWVV	8	Unmodified	_KEPHGWVV_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.255977	950.497401	-0.26867	-0.00012795	4.0903	0.001948	3.8216	0.0018201	476.2576034892362	32.727	0.32467	32.564	32.398	32.723	-0.16259	-0.041376	0.00081126	NaN	46.766	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153420			30610	6938	21138	21178							0.020172219628989296
KEPHPLPLVPR	11	Unmodified	_KEPHPLPLVPR_					0	0	0		nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19;nc|ENSG00000163958|Q8WVZ1-3|ZDHHC19;ENSG00000163958|ENST00000296326|ZDHHC19	nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19	nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.88232421875	2	641.885147	1281.75574	-2.5036	-0.001607	-1.8686	-0.0011994	-4.3722	-0.0028064	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	0.97926	1	11578	11578		41.427	11.109	1	1400600			30611	7180	21139	21179	35107	35107					0.1261333348509197
KEPNTDDFRMI	11	Unmodified	_KEPNTDDFRMI_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7976989746094	3	455.887093	1364.63945	-0.68669	-0.00031305	2.8926	0.0013187	2.2059	0.0010056	455.88824717567417	28.321	0.70327	28.152	27.807	28.51	-0.16897					20	16	2	0	0	0	0.024743	1	1648	1648		23.378	1.5975	1	91648	+		30612	23668	21140	21180	35108	35108					-0.028283978677563937
KEPRSGPL	8	Unmodified	_KEPRSGPL_					0	0	0		ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2428894042969	2	442.253434	882.492316	-1.5907	-0.00070347	1.7049	0.000754	0.11425	5.0527E-05	442.2552888802702	38.345	0.13306	38.372	38.264	38.397	0.027275					5	3	2	0	0	0	0.027866	1	3149	3149		21.96	0.25755	1	31738			30613	16177	21141	21181	35109	35109					0.046369181002773985
KEPRSGPL	8	Unmodified	_KEPRSGPL_					0	0	0		ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	ENST00000528273.5_1_17:43509052-43510583:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.253434	882.492316	0.060497	2.6755E-05	-0.59934	-0.00026506	-0.53884	-0.00023831	442.25289221545546	38.539	0.27291	38.32	38.218	38.491	-0.21849	-0.026073	-0.0015034	NaN	39.253	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78015			30614	16177	21141	21181							0.046369181002773985
KEPTVLTLN	9	Unmodified	_KEPTVLTLN_					0	0	0			REV__ENSG00000177542|ENST00000628067|SLC25A22;REV__ENSG00000182902|ENST00000327451|SLC25A18	REV__ENSG00000182902|ENST00000327451|SLC25A18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7789306640625	2	507.795132	1013.57571	-0.24611	-0.00012497	-0.1055	-5.3571E-05	-0.35161	-0.00017854	507.7950074822295	78.947	0.95745	78.755	78.464	79.421	-0.1921					44	22	4	0	0	0	0.024292	1	9747	9747		49.442	7.0454	1	976110	+		30615	27519;27122	21142	21182	35110	35110					0.06946609757471833
KEPVVAVEPPL	11	Unmodified	_KEPVVAVEPPL_					0	0	0		nc|ENSG00000160401|Q5JU67-2|CFAP157;ENSG00000160401|ENST00000373295|CFAP157	nc|ENSG00000160401|Q5JU67-2|CFAP157	nc|ENSG00000160401|Q5JU67-2|CFAP157	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3424682617188	2	589.344989	1176.67542	-0.20383	-0.00012013	-3.1215	-0.0018397	-3.3254	-0.0019598	589.3430115300414	103.72	0.59683	103.6	103.36	103.96	-0.12724					38	13	4	0	0	0	1.0392	1	12918	12918		28.081	1.3886	1	525960			30616	6812	21143	21183	35111	35111					0.09415427371436635
KEQEVNIC	8	Unmodified	_KEQEVNIC_					0	0	0			REV__ENST00000420241.1_1_21:28739411-28739597:-|nuORF	REV__ENST00000420241.1_1_21:28739411-28739597:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2862243652344	2	481.734217	961.453881	5.6029	0.0026991	-1.5609	-0.00075196	4.042	0.0019471	481.73330067700635	16.948	0.86658	16.694	16.31	17.176	-0.25378					32	24	2	0	0	0	0.027866	1	94	94		38.806	5.2906	1	30058	+		30617	32157	21144	21184	35112	35112					-0.028387555965423417
KEQHTMPL	8	Unmodified	_KEQHTMPL_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000566052.1_1_16:1652334-1657279:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.263671875	2	492.252577	982.490601	-0.9179	-0.00045184	-2.6296	-0.0012944	-3.5475	-0.0017463	492.25105115715905	40.215	0.51729	40.065	39.707	40.224	-0.1497					31	13	3	0	0	0	0.027866	1	3434	3434		42.474	23.114	1	682330			30618	9632	21145	21185	35113	35113					-0.0013445897998280998
KEQHTMPL	8	Unmodified	_KEQHTMPL_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000566052.1_1_16:1652334-1657279:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.252577	982.490601	-0.064571	-3.1785E-05	-3.7345	-0.0018383	-3.7991	-0.0018701	492.250591269178	40.358	0.55933	40.133	39.773	40.332	-0.225	0.021286	-0.00066021	NaN	52.299	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	694410			30619	9632	21145	21185							-0.0013445897998280998
KEQHTMPL	8	Unmodified	_KEQHTMPL_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000566052.1_1_16:1652334-1657279:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.252577	982.490601	-0.88786	-0.00043705	-2.9798	-0.0014668	-3.8677	-0.0019039	492.25078010989773	40.368	0.64318	40.138	39.771	40.414	-0.23021	0.025777	8.2768E-05	NaN	52.299	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	769940			30620	9632	21145	21185							-0.0013445897998280998
KEQIVKQNL	9	Unmodified	_KEQIVKQNL_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.8079223632812	2	550.327131	1098.63971	-0.33469	-0.00018419	-0.24675	-0.0001358	-0.58144	-0.00031998	550.3269217880407	61.06	0.72348	61.06	60.73	61.453	0					44	18	3	0	0	0	0.024456	1	7001	7001		42.864	0	1	970170			30621	5806	21146	21186	35114	35114					0.09433389914420331
KEQIVKQNL	9	Unmodified	_KEQIVKQNL_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.327131	1098.63971	-0.55936	-0.00030783	-0.10239	-5.6347E-05	-0.66175	-0.00036418	550.3270134800132	61.29	0.70665	61.063	60.669	61.375	-0.22663	-0.0020079	-7.2958E-05	NaN	35.152	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1065200			30622	5806	21146	21186							0.09433389914420331
KEQIVKQNL	9	Unmodified	_KEQIVKQNL_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.327131	1098.63971	-0.75752	-0.00041688	0.16	8.8053E-05	-0.59752	-0.00032883	550.3271239401784	61.001	0.75722	61.072	60.677	61.434	0.071125	0.0066979	0.00021584	NaN	35.152	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1075900			30623	5806	21146	21186							0.09433389914420331
KEQKSKAI	8	Unmodified	_KEQKSKAI_					0	0	0			REV__nc|ENSG00000087269|P78316-2|NOP14	REV__nc|ENSG00000087269|P78316-2|NOP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7563781738281	2	466.282192	930.549831	0.21974	0.00010246	-4.1846	-0.0019512	-3.9649	-0.0018488	466.2800970351196	29.31	0.70889	29.388	29.054	29.763	0.078344					49	17	6	0	0	0	0.027866	1	1757	1757		51.335	0	1	7841300	+		30624	20795	21147	21187	35115	35115					0.08177760305852644
KEQLALLNK	9	Unmodified	_KEQLALLNK_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	2	528.824224	1055.63389	-1.0963	-0.00057975	1.0827	0.00057254	-0.013633	-7.2096E-06	528.8248541487361	73.316	0.40681	73.316	73.109	73.516	0					28	10	4	0	0	0	0.024405	1	8936	8936		44.117	3.3386	1	1293500	+		30625	24526	21148	21188	35116	35116					0.10830291402749026
KEQLALLNK	9	Unmodified	_KEQLALLNK_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8082275390625	2	528.824224	1055.63389	-0.58515	-0.00030944	3.0647	0.0016207	2.4796	0.0013112	528.82461751854	73.635	0.48198	73.363	73.129	73.611	-0.27126					40	12	5	0	0	0	0.024477	1	8983	8983		44.117	3.3386	1	1283900	+		30626	24526	21148	21188	35117	35117					0.10830291402749026
KEQLFTTAL	9	Unmodified	_KEQLFTTAL_					0	0	0			REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.279296875	2	525.795132	1049.57571	-0.01521	-7.9972E-06	-0.0064661	-3.3998E-06	-0.021676	-1.1397E-05	525.7949228750658	87.082	0.37944	87.047	86.899	87.279	-0.035355					10	8	2	0	0	0	0.024539	1	10941	10941		27.882	1.1893	1	81274	+		30627	24069	21149	21189	35118	35118					0.05290609757457787
KEQLKRVQ	8	Unmodified	_KEQLKRVQ_					0	0	0			REV__ENSG00000176946|ENST00000407315|THAP4	REV__ENSG00000176946|ENST00000407315|THAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7901000976562	2	514.81419	1027.61383	0.24572	0.0001265	-3.6963	-0.0019029	-3.4506	-0.0017764	514.8123028664132	52.481	0.74045	52.334	52.095	52.835	-0.14724					22	18	2	0	0	0	0.027866	1	5605	5605		47.916	7.1374	1	241530	+		30628	27065	21150	21190	35119	35119					0.1011254046279646
KEQLREIIA	9	Unmodified	_KEQLREIIA_					0	0	0			REV__ENSG00000104435|ENST00000220876|STMN2	REV__ENSG00000104435|ENST00000220876|STMN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2890014648438	2	550.327131	1098.63971	-0.9344	-0.00051422	0.050744	2.7926E-05	-0.88365	-0.0004863	550.3270983795571	45.479	0.4358	45.33	45.079	45.515	-0.1488					24	12	2	0	0	0	0.024427	1	4360	4360		51.335	8.9393	1	648830	+		30629	21448	21151	21191	35120	35120					0.09433389914443069
KEQLREIIA	9	Unmodified	_KEQLREIIA_					0	0	0			REV__ENSG00000104435|ENST00000220876|STMN2	REV__ENSG00000104435|ENST00000220876|STMN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.327131	1098.63971	-0.59466	-0.00032726	-0.65607	-0.00036105	-1.2507	-0.00068831	550.3268407321189	45.35	0.49917	45.35	45.114	45.613	0	-0.017523	-0.00052886	NaN	51.335	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685210	+		30630	21448	21151	21191							0.09433389914443069
KEQLREIIA	9	Unmodified	_KEQLREIIA_					0	0	0			REV__ENSG00000104435|ENST00000220876|STMN2	REV__ENSG00000104435|ENST00000220876|STMN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.327131	1098.63971	-0.53846	-0.00029633	1.6834	0.00092641	1.1449	0.00063009	550.3271055606889	45.379	0.50149	45.423	45.18	45.681	0.043877	0.054884	0.0020461	NaN	51.335	59	14	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	773450	+		30631	21448	21151	21191							0.09433389914443069
KEQLYQPF	8	Unmodified	_KEQLYQPF_					0	0	0			REV__ENSG00000078725|ENST00000265922|BRINP1	REV__ENSG00000078725|ENST00000265922|BRINP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7769165039062	2	526.7742	1051.53385	-0.21599	-0.00011378	-3.4388	-0.0018115	-3.6548	-0.0019253	526.7722801255999	49.889	0.70061	49.737	49.33	50.031	-0.1512					34	18	3	0	0	0	0.027866	1	5119	5119		23.042	0	1	1381700	+		30632	20618	21152	21192	35121	35121					0.010140540689462796
KEQRTKAR	8	Unmodified	_KEQRTKAR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.26885986328125	2	508.801614	1015.58868	-0.33441	-0.00017015	2.4874	0.0012656	2.1529	0.0010954	508.8027578463173	45.286	0.63827	45.034	44.786	45.425	-0.25252					36	17	3	0	0	0	0.027866	1	4230	4230		24.203	0	1	1338200	+		30633	23044	21153	21193	35122	35122					0.08150485660223694
KEQRTVPSE	9	Unmodified	_KEQRTVPSE_					0	0	0			REV__ENSG00000165916|ENST00000298852|PSMC3	REV__ENSG00000165916|ENST00000298852|PSMC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2783813476562	2	537.28292	1072.55129	0.19546	0.00010502	1.0891	0.00058515	1.2845	0.00069016	537.784453059753	84.733	1.0075	84.53	83.951	84.958	-0.20329					30	23	2	0	0	0	0.024025	1	10265	10265		44.377	0	1	230700	+		30634	25945	21154	21194	35123	35123					0.017913496039454913
KEQTKLKW	8	Unmodified	_KEQTKLKW_					0	0	0		ENSG00000160124|ENST00000291458|MIX23;KPNA1-CCDC58|2|fusion	ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	MSMS	OPSCC_40_ClassI_Rep-2	5	530.8092041015625	2	530.811116	1059.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.88	1	103.75	103.25	104.25	-0.12927								0	0	0	0.68521	1	12933	12933		42.396	4.5846	1				30635	6784	21155	21195	35124	35124					0.0802602223127451
KEQVAPAVMG	10	Unmodified	_KEQVAPAVMG_					0	0	0			REV__ENSG00000173281|ENST00000310455|PPP1R3B	REV__ENSG00000173281|ENST00000310455|PPP1R3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3115234375	2	515.273509	1028.53247	0.41484	0.00021376	-2.307	-0.0011887	-1.8922	-0.00097498	515.2733000332629	20.208	0.28821	19.985	19.779	20.067	-0.22344					7	5	2	0	0	0	0.03519	1	483	483		47.657	0	1	14255	+		30636	26762	21156	21196	35125	35125					0.019340967085327065
KEQYHFCYDI	10	Unmodified	_KEQYHFCYDI_					0	0	0		nc|ENSG00000204179|Q4JDL3-3|PTPN20;ENST00000504747.1_10:48738623-48827915:-|nuORF;nc|ENSG00000204179|Q4JDL3-5|PTPN20;nc|ENSG00000204179|Q4JDL3-10|PTPN20;nc|ENSG00000204179|Q4JDL3-6|PTPN20;nc|ENSG00000204179|Q4JDL3-11|PTPN20;nc|ENSG00000204179|Q4JDL3-4|PTPN20;nc|ENSG00000204179|Q4JDL3-2|PTPN20;ENSG00000204179|ENST00000374339|PTPN20	nc|ENSG00000204179|Q4JDL3-3|PTPN20	nc|ENSG00000204179|Q4JDL3-3|PTPN20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.7535095214844	3	449.200901	1344.58087	-0.73265	-0.0003291	0.66287	0.00029776	-0.069779	-3.1345E-05	449.2011322761976	39.493	0.49114	39.394	39.199	39.69	-0.098755					32	13	4	0	0	0	0.03519	1	3388	3388		12.207	0	1	607620			30637	18657	21157	21197	35126	35126					-0.07763454442215334
KERAEEVLC	9	Unmodified	_KERAEEVLC_					0	0	0		nc|ENSG00000196954|P49662-5|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF	nc|ENSG00000196954|P49662-5|CASP4	nc|ENSG00000196954|P49662-5|CASP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7636108398438	2	538.773874	1075.53319	-1.2524	-0.00067478	0.38868	0.00020941	-0.86375	-0.00046537	538.7740406517399	30.573	1.3627	30.647	30.129	31.492	0.074314					45	32	2	0	0	0	0.023181	1	2033	2033		71.296	7.9894	1	245820			30638	16264	21158	21198	35127	35127					-0.001551086423887682
KERAEEVLC	9	Unmodified	_KERAEEVLC_					0	0	0		nc|ENSG00000196954|P49662-5|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF	nc|ENSG00000196954|P49662-5|CASP4	nc|ENSG00000196954|P49662-5|CASP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.773874	1075.53319	-0.93246	-0.00050239	0.80195	0.00043207	-0.13051	-7.0317E-05	538.7741969549584	30.838	0.79387	30.85	30.376	31.17	0.011797	0.06304	0.00012629	NaN	60.118	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161560			30639	16264	21158	21198							-0.001551086423887682
KERAFKLQFV	10	Unmodified	_KERAFKLQFV_					0	0	0		MFN2|p.R663L|1|0.25|ENSG00000116688|chr1:12007168-12007168|G/T|missense_variant	MFN2|p.R663L|1|0.25|ENSG00000116688|chr1:12007168-12007168|G/T|missense_variant	MFN2|p.R663L|1|0.25|ENSG00000116688|chr1:12007168-12007168|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3695068359375	2	633.371872	1264.72919	-0.4938	-0.00031276	-4.0259	-0.0025499	-4.5197	-0.0028627	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0781	1	11952	11952		35.618	2.8059	1	9845500			30640	17976	21159	21199	35128	35128					0.1074164459378153
KERDFYFGKLR	11	Unmodified	_KERDFYFGKLR_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;ENST00000588085.1_1_18:32711911-32720330:+|nuORF;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	ENSG00000101367|ENST00000375571|MAPRE1;nc|ENSG00000166974|Q15555-4|MAPRE2	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7681884765625	3	486.933254	1457.77793	-0.50509	-0.00024594	-0.95453	-0.00046479	-1.4596	-0.00071074	486.93197389197127	36.548	0.90326	36.505	36.208	37.112	-0.042454					49	23	4	0	0	0	0.024726	1	2973	2973		10.998	6.1121	1	502590			30641	2319;7637	21160	21200	35129	35129					0.06735513162880125
KEREKLLA	8	Unmodified	_KEREKLLA_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7844543457031	2	493.803291	985.59203	-0.014837	-7.3265E-06	-1.323	-0.00065329	-1.3378	-0.00066062	493.8024766767786	47.489	0.44902	47.489	47.111	47.56	0					13	12	2	0	0	0	0.027866	1	4762	4762		45.952	0	1	142790	+		30642	27860	21161	21201	35130	35130					0.09865735714242874
KERELAIK	8	Unmodified	_KERELAIK_					0	0	0			REV__ENSG00000101004|ENST00000278886|NINL	REV__ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2535705566406	2	493.803291	985.59203	-0.21353	-0.00010544	-0.74221	-0.00036651	-0.95574	-0.00047195	493.80282820641554	56.866	0.4211	56.961	56.783	57.204	0.095306					19	11	2	0	0	0	0.027866	1	6282	6282		44.117	0	1	716450	+		30643	21176	21162	21202	35131	35131					0.09865735714220136
KERIEITKAYT	11	Unmodified	_KERIEITKAYT_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2459716796875	3	451.257515	1350.75072	-0.8505	-0.00038379	-0.36534	-0.00016486	-1.2158	-0.00054866	451.5917606356268	45.866	0.18118	45.663	45.563	45.744	-0.20226					6	4	2	0	0	0	0.02476	1	4363	4363		32.034	18.798	1	60099	+		30644	27815	21163	21203	35132	35132					0.08936984831848349
KERIKEKD	8	Unmodified	_KERIKEKD_					0	0	0			REV__ENSG00000119280|ENST00000366663|C1orf198	REV__ENSG00000119280|ENST00000366663|C1orf198	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3031005859375	2	523.303655	1044.59276	-0.7287	-0.00038133	0.55108	0.00028838	-0.17762	-9.2947E-05	523.3038614259895	29.972	0.72249	29.795	29.443	30.165	-0.17706					39	16	4	0	0	0	0.845	1	1877	1877		55.504	0.72789	1	778370	+		30645	22445	21164	21204	35133	35133					0.07224530363305348
KERISKLHR	9	Unmodified	_KERISKLHR_					0	0	0		nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.8600463867188	2	583.859464	1165.70437	-0.716	-0.00041804	-0.29707	-0.00017345	-1.0131	-0.00059149	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	1.0233	1	12069	12069		15.642	0	1	1429300			30646	18452	21165	21205	35134	35134					0.1281500951106409
KERKKTAGT	9	Unmodified	_KERKKTAGT_					0	0	0		ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80340576171875	2	509.803823	1017.59309	0.28678	0.0001462	-0.54644	-0.00027858	-0.25966	-0.00013238	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.96906	1	10329	10329		26.693	0	1	3746700			30647	12290	21166	21206	35135	35135					0.08499950083125896
KERKKTAGT	9	Unmodified	_KERKKTAGT_					0	0	0		ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.80364990234375	2	509.803823	1017.59309	0.28849	0.00014708	-0.65649	-0.00033468	-0.368	-0.00018761	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.96322	1	10274	10274		27.882	5.9224	1	3441300			30648	12290	21166	21206	35136	35136					0.08499950083125896
KERLEIEIQ	9	Unmodified	_KERLEIEIQ_					0	0	0		CTAGE1|p.E171K|1|0.23|ENSG00000212710|chr18:22417301-22417301|C/T|missense_variant	CTAGE1|p.E171K|1|0.23|ENSG00000212710|chr18:22417301-22417301|C/T|missense_variant	CTAGE1|p.E171K|1|0.23|ENSG00000212710|chr18:22417301-22417301|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.3292846679688	2	579.32987	1156.64519	-0.20759	-0.00012027	-0.18431	-0.00010678	-0.3919	-0.00022704	579.3295931683987	47.486	0.81158	47.333	47.015	47.827	-0.15301					67	23	5	0	0	0	0.11727	1	4737	4737		106.68	5.2232	1	3648400			30649	598	21167	21207	35137	35137					0.07313068706230297
KERLHKELL	9	Unmodified	_KERLHKELL_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521;REV__ENSG00000102935|ENST00000563137|ZNF423	REV__ENSG00000102935|ENST00000563137|ZNF423	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	584.330078125	2	583.356222	1164.69789	-1.1533	-0.00067277	1.8655	0.0010882	0.71222	0.00041548	583.3572965217015	60.031	0.43638	59.831	59.577	60.014	-0.20016					21	11	3	0	0	0	0.024427	1	6866	6866		34.173	9.9698	1	127490	+		30650	28480;21342	21168	21208	35138	35138					0.12213071559722266
KERMFQLL	8	Unmodified	_KERMFQLL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7846069335938	2	532.799694	1063.58484	-0.81253	-0.00043292	-0.95962	-0.00051129	-1.7722	-0.0009442	532.7990325599719	45.532	0.10296	45.532	45.445	45.548	0					4	2	2	0	0	0	0.027866	1	4429	4429		40.573	21.469	1	703200	+		30651	26810;37445;35108	21169	21209	35139	35139					0.05558679842170022
KERPETSAAL	10	Unmodified	_KERPETSAAL_					0	0	0		nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L	nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.2999267578125	2	551.29857	1100.58259	-0.42898	-0.0002365	2.5919	0.0014289	2.1629	0.0011924	551.299965520362	26.455	2.1006	26.455	25.009	27.109	0					138	50	5	0	0	0	0.91678	1	1335	1335		52.937	1.744	1	3830900			30652	7495	21170	21210	35140	35140					0.03631922638055585
KERPINLVS	9	Unmodified	_KERPINLVS_					0	0	0			REV__ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	REV__ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.3160400390625	2	528.314023	1054.61349	-0.29034	-0.00015339	2.8828	0.001523	2.5925	0.0013696	528.3153734222275	66.754	0.86084	66.505	66.179	67.04	-0.24839					67	27	3	0	0	0	0.45795	1	7654	7654		62.107	1.9892	1	7051200	+		30653	19143	21171	21211	35141	35141					0.08837120742941806
KERRKKQQLIL	11	Unmodified	_KERRKKQQLIL_					0	0	0			REV__ENST00000264645.11_1_17:38318069-38318135:+|nuORF	REV__ENST00000264645.11_1_17:38318069-38318135:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2821044921875	3	480.643815	1438.90962	-0.92431	-0.00044427	2.5212	0.0012118	1.5969	0.00076753	480.6449344700863	46.232	0.35745	46.08	45.92	46.277	-0.15156					16	9	2	0	0	0	0.024873	1	4565	4565		9.6461	0	1	156730	+		30654	29723	21172	21212	35142	35142					0.20771743250656982
KERRNLLRL	9	Unmodified	_KERRNLLRL_					0	0	0		ENST00000532045.5_1_11:834538-836571:+|nuORF;ENSG00000177697|ENST00000397420|CD151	ENST00000532045.5_1_11:834538-836571:+|nuORF	ENST00000532045.5_1_11:834538-836571:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	599.3796997070312	2	599.380563	1196.74657	-0.68609	-0.00041123	-0.25526	-0.000153	-0.94135	-0.00056423	599.3802338408786	102.36	0.61472	102.35	102.06	102.68	-0.0054474					45	13	5	0	0	0	0.80658	1	13049	13049		38.806	0	1	1236000			30655	8766	21173	21213	35143	35143					0.15606984919463684
KERSLQEV	8	Unmodified	_KERSLQEV_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7869567871094	2	494.774731	987.534909	0.011724	5.8009E-06	-3.7181	-0.0018396	-3.7064	-0.0018338	494.7729138604019	19.419	0.24704	19.258	19.134	19.381	-0.16079					8	4	2	0	0	0	0.027866	1	424	424		68.787	0	1	35719	+		30656	27166	21174	21214	35144	35144					0.04064268437866758
KERSSLEEDL	10	Unmodified	_KERSSLEEDL_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5364074707031	3	402.538458	1204.59355	-0.5452	-0.00021946	-4.4874	-0.0018064	-5.0326	-0.0020258	402.5365975396167	32.657	1.0219	32.499	31.904	32.926	-0.15772					43	24	3	0	0	0	0.88978	1	2249	2249		54.722	18.405	1	3691700	+		30657	28343	21175	21215	35145	35145					-0.0005671977830843389
KERSSYQWDAR	11	Unmodified	_KERSSYQWDAR_					0	0	0			REV__ENSG00000107362|ENST00000333421|ABHD17B	REV__ENSG00000107362|ENST00000333421|ABHD17B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2608642578125	3	475.900502	1424.67968	-0.27542	-0.00013107	3.8881	0.0018504	3.6127	0.0017193	475.90157327852216	27.863	0.15871	27.711	27.61	27.769	-0.15195					5	3	2	0	0	0	0.024816	1	1558	1558		16.53	5.4331	1	50908	+		30658	21665	21176	21216	35146	35146					-0.015677151529644107
KESIVTVT	8	Unmodified	_KESIVTVT_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.2636413574219	2	438.755475	875.496398	-0.53596	-0.00023516	2.3928	0.0010498	1.8568	0.00081468	438.75641741946333	41.069	0.62031	40.934	40.674	41.294	-0.13553					30	15	3	0	0	0	0.027866	1	3578	3578		21.96	3.6355	1	689390	+		30659	25619	21177	21217	35147	35147					0.05366962803338993
KESLILQV	8	Unmodified	_KESLILQV_					0	0	0		ENSG00000166387|ENST00000299492|PPFIBP2	ENSG00000166387|ENST00000299492|PPFIBP2	ENSG00000166387|ENST00000299492|PPFIBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7640380859375	2	465.286943	928.559333	-0.82202	-0.00038248	1.7638	0.00082069	0.94182	0.00043822	465.28739168793686	21.89	0.6271	21.688	21.421	22.048	-0.20199					20	12	3	0	0	0	0.027866	1	685	685		16.473	0	1	59852			30660	7548	21178	21218	35148	35148					0.09219528591381732
KESLVDKQN	9	Unmodified	_KESLVDKQN_					0	0	0			REV__ENSG00000101413|ENST00000373433|RPRD1B	REV__ENSG00000101413|ENST00000373433|RPRD1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.7852783203125	2	530.785296	1059.55604	-0.96463	-0.00051201	0.41735	0.00022152	-0.54728	-0.00029049	530.7855112515458	52.969	0.52323	52.969	52.673	53.196	0					25	13	2	0	0	0	0.17845	1	5703	5703		93.143	5.4468	1	5512200	+		30661	21231	21179	21219	35149	35149					0.028642337467317702
KESNTKDYIL	10	Unmodified	_KESNTKDYIL_					0	0	0		L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|4|1|sense	L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|4|1|sense	L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|4|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.2147216796875	3	404.215316	1209.62412	0.050651	2.0474E-05	-2.1277	-0.00086007	-2.0771	-0.00083959	404.214490318942	28.496	0.88581	28.492	28.199	29.085	-0.0042019					49	20	4	0	0	0	1.0275	1	1648	1648		42.338	9.5875	1	1804000			30662	17820	21180	21220	35150	35150					0.0276905860671377
KESSLLATI	9	Unmodified	_KESSLLATI_					0	0	0			REV__ENST00000591092.5_1_19:5941655-5957972:-|nuORF	REV__ENST00000591092.5_1_19:5941655-5957972:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2821044921875	2	481.281857	960.549162	-0.2328	-0.00011204	0.33446	0.00016097	0.10165	4.8925E-05	481.28189540539114	46.239	0.76473	46.291	46.031	46.796	0.051395					63	21	4	0	0	0	0.39228	1	4514	4514		66.429	2.222	1	4519700	+		30663	35716	21181	21221	35151	35151					0.06730920866152701
KESSSGITL	9	Unmodified	_KESSSGITL_					0	0	0			REV__ENSG00000068323|ENST00000315869|TFE3	REV__ENSG00000068323|ENST00000315869|TFE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.2737731933594	2	461.248015	920.481476	-0.33281	-0.00015351	0.8237	0.00037993	0.4909	0.00022642	461.2482285713642	48.782	0.71278	48.63	48.433	49.146	-0.15277					29	19	3	0	0	0	0.02435	1	4977	4977		34.173	17.699	1	213320	+		30664	20374	21182	21222	35152	35152					0.01805470935357789
KESTKLGVGF	10	Unmodified	_KESTKLGVGF_					0	0	0			REV__nc|ENSG00000107447|P04053-2|DNTT	REV__nc|ENSG00000107447|P04053-2|DNTT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.768310546875	2	533.300581	1064.58661	-0.16337	-8.7127E-05	4.2516	0.0022674	4.0883	0.0021803	533.8039441607879	25.034	0.46506	25.114	24.871	25.336	0.08009					32	10	5	0	0	0	0.03519	1	1062	1062		27.882	1.1893	1	229690	+		30665	21668	21183	21223	35153	35153					0.056900121317767116
KETAEKETTEK	11	Unmodified	_KETAEKETTEK_					0	0	0			REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	431.8885498046875	3	431.889268	1292.64598	-0.3153	-0.00013617	-1.1263	-0.00048642	-1.4416	-0.0006226	431.88868783201457	21.89	1.0172	21.688	21.08	22.097	-0.20199					37	20	3	0	0	0	1.017	1	709	709		33.039	0	1	388430	+		30666	24615	21184	21224	35154	35154					0.01135818564625879
KETAEKETTEK	11	Unmodified	_KETAEKETTEK_					0	0	0			REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	431.889268	1292.64598	0.66503	0.00028722	-2.4968	-0.0010783	-1.8318	-0.00079112	431.88829163427346	21.79	0.66684	21.613	21.256	21.923	-0.17721	-0.079897	-0.0013267	NaN	33.039	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266420	+		30667	24615	21184	21224							0.01135818564625879
KETFTSEKN	9	Unmodified	_KETFTSEKN_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.2721557617188	2	542.269478	1082.5244	2.1816	0.001183	1.9801	0.0010737	4.1617	0.0022567	542.2705246569528	18.465	1.1433	18.223	17.924	19.068	-0.24256					60	22	4	0	0	0	0.80003	1	268	268		39.253	12.56	1	122730			30668	9984	21185	21225	35155	35155					-0.013557590072423409
KETFTSEKN	9	Unmodified	_KETFTSEKN_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.269478	1082.5244	0.43044	0.00023342	3.1764	0.0017225	3.6069	0.0019559	542.2712917787812	18.415	1.1366	18.259	18.002	19.138	-0.15637	-0.0089431	-8.4201E-06	NaN	39.253	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91832			30669	9984	21185	21225							-0.013557590072423409
KETFTSEKN	9	Unmodified	_KETFTSEKN_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.269478	1082.5244	0.025616	1.3891E-05	4.0878	0.0022167	4.1134	0.0022306	542.2716699944489	18.526	0.79189	18.322	18.064	18.856	-0.20371	0.054149	0.00098004	NaN	39.253	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48560			30670	9984	21185	21225							-0.013557590072423409
KETGRETKY	9	Unmodified	_KETGRETKY_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.29248046875	2	556.290745	1110.56694	-0.21073	-0.00011723	3.6501	0.0020305	3.4393	0.0019133	556.2926646702285	33.701	0.96073	33.47	32.916	33.876	-0.23107					63	23	4	0	0	0	0.091713	1	2436	2436		113.41	22.635	1	3783200			30671	7442	21186	21226	35156	35156					0.01607636120979805
KETGRETKY	9	Unmodified	_KETGRETKY_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.2926025390625	2	556.290745	1110.56694	-0.40705	-0.00022644	3.709	0.0020633	3.302	0.0018369	556.29269717046	33.623	0.77542	33.423	33.056	33.831	-0.20019					59	19	5	0	0	0	0.091713	1	2398	2398		113.41	1.3044	1	4450100			30672	7442	21186	21226	35157	35157					0.01607636120979805
KETKSLHVT	9	Unmodified	_KETKSLHVT_					0	0	0		ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3053588867188	2	521.798206	1041.58186	-0.41396	-0.000216	0.34992	0.00018259	-0.064042	-3.3417E-05	521.7984158052698	47.766	0.89228	47.613	47.3	48.193	-0.15301					75	26	4	0	0	0	0.024292	1	4747	4747		58.782	18.004	1	11870000			30673	7900	21187	21227	35158	35158					0.06273127989015848
KETLKSSV	8	Unmodified	_KETLKSSV_					0	0	0		nc|ENSG00000173950|Q8NBI6-3|XXYLT1	nc|ENSG00000173950|Q8NBI6-3|XXYLT1	nc|ENSG00000173950|Q8NBI6-3|XXYLT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.74554443359375	2	446.260925	890.507297	1.7219	0.00076842	-0.90282	-0.00040289	0.81909	0.00036553	446.26014437607876	24.867	0.30857	24.695	24.556	24.865	-0.17151					12	6	3	0	0	0	0.027866	1	1083	1083		51.335	15.717	1	32761			30674	18526	21188	21228	35159	35159					0.05766365177623811
KETLLLPLPPE	11	Unmodified	_KETLLLPLPPE_					0	0	0		ENST00000229268.12_1_12:6975429-6975777:+|nuORF	ENST00000229268.12_1_12:6975429-6975777:+|nuORF	ENST00000229268.12_1_12:6975429-6975777:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.9033508300781	3	417.25159	1248.73294	-0.0497	-2.0737E-05	-3.2069	-0.0013381	-3.2566	-0.0013588	417.2500749523642	31.969	0.46488	31.733	31.489	31.954	-0.23666					17	10	2	0	0	0	0.024746	1	2165	2165		15.921	0	1	64987			30675	11225	21189	21229	35160	35160					0.11852269577002517
KETNVVTYN	9	Unmodified	_KETNVVTYN_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2730102539062	2	534.272021	1066.52949	-0.75536	-0.00040357	4.2271	0.0022584	3.4717	0.0018548	534.274267269369	77.29	1.0828	77.128	76.825	77.908	-0.16196					48	25	3	0	0	0	0.80735	1	9172	9172		38.754	2.3069	1	1038300	+		30676	24948	21190	21230	35161	35161					-0.0011145514463350992
KETPISVLP	9	Unmodified	_KETPISVLP_					0	0	0			REV__nc|ENSG00000166220|Q96M53|TBATA	REV__nc|ENSG00000166220|Q96M53|TBATA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2873840332031	2	492.292225	982.569897	-1.1313	-0.00055694	2.0035	0.00098632	0.87222	0.00042939	492.29368848904323	21.953	0.2429	22.024	21.879	22.122	0.071489					6	4	2	0	0	0	0.024405	1	694	694		44.117	9.9443	1	14039	+		30677	25990	21191	21231	35162	35162					0.07791511245807214
KETVNIRADLE	11	Unmodified	_KETVNIRADLE_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	429.9023132324219	3	429.90162	1286.68303	0.34453	0.00014811	1.2903	0.00055468	1.6348	0.00070279	429.9020722897637	110.42	0.83455	110.43	110.12	110.96	0.0066528					70	24	4	0	0	0	1.0521	2	13927	13915;13927		16.53	0	1	652700	+		30678	23261	21192	21232	35163;35164	35164					0.051155349010286955
KETVWNCP	8	Unmodified	_KETVWNCP_					0	0	0		TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant;nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5;TDRD5|p.L431Ifs*20|1|0.06|ENSG00000162782|chr1:179634620-179634621|-/A|frameshift_variant	TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant	TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2707824707031	2	488.731477	975.448402	-0.37332	-0.00018245	4.1288	0.0020179	3.7555	0.0018354	488.7333840362439	22.993	0.72128	22.808	22.554	23.275	-0.18539					33	15	4	0	0	0	0.027866	1	876	876		12.207	0	1	439390			30679	6993	21193	21233	35165	35165					-0.04030434388369031
KEVAKKPP	8	Unmodified	_KEVAKKPP_					0	0	0			REV__nc|ENSG00000166197|Q14978-3|NOLC1	REV__nc|ENSG00000166197|Q14978-3|NOLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.2616882324219	2	448.781828	895.549102	0.089659	4.0237E-05	-0.056421	-2.5321E-05	0.033238	1.4917E-05	448.78164365969315	41.423	0.81146	41.446	41.147	41.958	0.023006					55	22	3	0	0	0	0.027866	1	3650	3650		30.504	0	1	1981600	+		30680	36883	21194	21234	35166	35166					0.09714965656803543
KEVCITIFN	9	Unmodified	_KEVCITIFN_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7857666015625	2	533.78371	1065.55287	1.536	0.00081991	1.5648	0.00083529	3.1009	0.0016552	533.7845227312747	23.874	0.56754	23.693	23.371	23.938	-0.18089					31	12	3	0	0	0	0.4752	1	976	976		60.972	9.6365	1	2513000			30681	999	21195	21235	35167	35167					0.022712673683372486
KEVEGELV	8	Unmodified	_KEVEGELV_					0	0	0			REV__ENSG00000138385|ENST00000260956|SSB	REV__ENSG00000138385|ENST00000260956|SSB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2320251464844	2	451.745108	901.475663	-0.90481	-0.00040874	2.8888	0.001305	1.984	0.00089626	451.7460588250471	35.842	1.0299	35.8	35.25	36.28	-0.042454					42	27	2	0	0	0	0.027866	1	2770	2770		51.335	0	1	394160	+		30682	23849	21196	21236	35168	35168					0.020983724236771195
KEVEKKLR	8	Unmodified	_KEVEKKLR_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3115844726562	2	515.324391	1028.63423	0.39859	0.0002054	1.5687	0.00080841	1.9673	0.0010138	515.3254252939648	20.183	0.33768	19.96	19.779	20.117	-0.22344					10	6	2	0	0	0	0.027866	1	496	496		110.34	3.922	1	45417			30683	1322	21197	21237	35169	35169					0.1210571112260368
KEVENMLW	8	Unmodified	_KEVENMLW_					0	0	0			REV__ENSG00000130363|ENST00000367069|RSPH3	REV__ENSG00000130363|ENST00000367069|RSPH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.759033203125	2	524.760235	1047.50592	0.25484	0.00013373	-0.57025	-0.00029925	-0.31542	-0.00016552	524.7600778745397	57.135	0.31669	56.933	56.819	57.136	-0.20208					15	8	2	0	0	0	0.027866	1	6256	6256		66.429	38.547	1	146900	+		30684	23107	21198	21238	35170	35170					-0.015935921828031496
KEVFEVVDI	9	Unmodified	_KEVFEVVDI_					0	0	0			REV__ENST00000277141.10_2_9:88918025-88918088:-|nuORF	REV__ENST00000277141.10_2_9:88918025-88918088:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3042602539062	2	539.294965	1076.57538	0.13539	7.3015E-05	-2.2797	-0.0012295	-2.1444	-0.0011564	539.2944032427846	86.213	0.81595	86.213	85.789	86.605	0					43	18	4	0	0	0	0.024021	1	10824	10824		68.787	0	1	337870	+		30685	29856	21199	21239	35171	35171					0.04015190037625871
KEVGNLRRG	9	Unmodified	_KEVGNLRRG_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7902221679688	2	514.801614	1027.58868	-0.15035	-7.7398E-05	0.52362	0.00026956	0.37327	0.00019216	514.8015554577519	62.009	0.74081	61.782	61.415	62.156	-0.22663					27	14	3	0	0	0	0.024456	1	7146	7146		35.152	4.8343	1	1331400			30686	5858	21200	21240	35172	35172					0.0759848566024175
KEVIGTGF	8	Unmodified	_KEVIGTGF_					0	0	0			REV__ENSG00000106688|ENST00000262352|SLC1A1	REV__ENSG00000106688|ENST00000262352|SLC1A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.77508544921875	2	425.737086	849.459619	-0.39432	-0.00016788	3.5579	0.0015147	3.1635	0.0013468	425.73843848698885	43.28	0.45149	43.054	42.753	43.205	-0.22597					17	11	2	0	0	0	0.027866	1	3952	3952		31.955	0	1	96871	+		30687	21637	21201	21241	35173	35173					0.028867109774296296
KEVILLPRC	9	Unmodified	_KEVILLPRC_					0	0	0			REV__POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	REV__POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7977294921875	2	535.823169	1069.63179	-0.73991	-0.00039646	-1.4366	-0.00076976	-2.1765	-0.0011662	535.8205286379689	66.049	0.3461	66.079	65.89	66.237	0.030106					18	8	3	0	0	0	0.023454	1	7751	7751		82.241	13.454	1	531050	+		30688	20122	21202	21242	35174	35174					0.09975539393280997
KEVKKPTLA	9	Unmodified	_KEVKKPTLA_					0	0	0		ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1	ENSG00000136643|ENST00000366960|RPS6KC1	ENSG00000136643|ENST00000366960|RPS6KC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.292724609375	2	507.321317	1012.62808	-0.54474	-0.00027636	-2.8736	-0.0014578	-3.4183	-0.0017342	507.31970995936956	20.821	0.86604	20.716	20.473	21.339	-0.10477					33	17	3	0	0	0	0.024506	1	647	647		23.042	0	1	272150			30689	5034	21203	21243	35175	35175					0.12227192891089089
KEVKLIVLH	9	Unmodified	_KEVKLIVLH_					0	0	0		nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	nc|ENSG00000145103|Q86SU0-3|ILDR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8164672851562	2	539.852784	1077.69102	-0.40448	-0.00021836	-1.0195	-0.00055037	-1.4239	-0.00076872	539.8513615393102	45.562	0.38075	45.309	45.258	45.638	-0.25252					15	10	2	0	0	0	0.024506	1	4359	4359		30.504	8.5438	1	250610			30690	5791	21204	21244	35176	35176					0.15527758679127146
KEVKLSPD	8	Unmodified	_KEVKLSPD_					0	0	0		ENSG00000258659|ENST00000429814|TRIM34;nc|ENSG00000258659|Q9BYJ4-2|TRIM34;ENST00000491385.1_1_11:5653561-5662456:+|nuORF	ENSG00000258659|ENST00000429814|TRIM34	ENSG00000258659|ENST00000429814|TRIM34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.8056640625	2	458.260925	914.507297	-0.0094817	-4.3451E-06	2.0762	0.00095145	2.0667	0.0009471	458.26096395824624	69.681	0.90096	69.696	69.133	70.034	0.014786					57	22	4	0	0	0	0.027866	1	8282	8282		30.318	0	1	1073600			30691	10929	21205	21245	35177	35177					0.04662365177614447
KEVKWIRV	8	Unmodified	_KEVKWIRV_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8082275390625	2	529.329476	1056.6444	-0.30239	-0.00016007	2.1354	0.0011303	1.833	0.00097027	529.3313218333781	73.688	0.3161	73.411	73.288	73.605	-0.2769					12	7	2	0	0	0	0.027866	1	8654	8654		47.916	3.3845	1	154900	+		30692	25244	21206	21246	35178	35178					0.11834318847832037
KEVMEMICNL	10	Unmodified	_KEVMEMICNL_					0	0	0			REV__nc|ENSG00000078699|O43439-2|CBFA2T2	REV__nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	402.86114501953125	3	403.860722	1208.56034	0.76902	0.00031058	-3.5157	-0.0014199	-2.7467	-0.0011093	404.1936172925223	23.44	0.49218	23.44	23.245	23.737	0					17	11	2	0	0	0	0.03519	1	937	937		11.932	0	1	24598	+		30693	20617	21207	21247	35179	35179					-0.03560084417881626
KEVNETYKLL	10	Unmodified	_KEVNETYKLL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.8817443847656	3	412.899328	1235.67615	-0.40787	-0.00016841	-4.2624	-0.00176	-4.6703	-0.0019284	413.23166556257127	28.963	0.34289	28.794	28.597	28.94	-0.16924					10	7	2	0	0	0	0.03519	1	1749	1749		59.931	15.554	1	33096			30694	18521	21208	21248	35180	35180					0.06774222020476373
KEVNIQATYW	10	Unmodified	_KEVNIQATYW_					0	0	0		ENST00000554979.1_1_14:23538591-23540356:-|nuORF;ENST00000553501.1_1_14:23538591-23540751:-|nuORF	ENST00000554979.1_1_14:23538591-23540356:-|nuORF	ENST00000554979.1_1_14:23538591-23540356:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.8740539550781	3	417.883789	1250.62954	0.18264	7.6323E-05	3.2984	0.0013783	3.481	0.0014547	417.8855775713986	37.246	0.49496	37.053	36.774	37.269	-0.193					22	12	2	0	0	0	0.03519	1	2976	2976		33.922	11.342	1	116020			30695	16639	21209	21249	35181	35181					0.014247821891785861
KEVQWEKL	8	Unmodified	_KEVQWEKL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	2	530.295299	1058.57605	-1.038	-0.00055043	2.6491	0.0014048	1.6111	0.00085435	530.2963103793076	72.987	0.7532	72.987	72.573	73.327	0					13	7	2	0	0	0	0.027866	1	8936	8936		51.335	18.523	1	185530			30696	9713	21210	21250	35182	35182					0.049100294773325004
KEVVAEVKAKF	11	Unmodified	_KEVVAEVKAKF_					0	0	0			REV__ENST00000593706.3_1_19:50365412-50367307:-|nuORF	REV__ENST00000593706.3_1_19:50365412-50367307:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.3711547851562	2	624.371538	1246.72852	-0.18259	-0.00011401	-1.5872	-0.00099103	-1.7698	-0.001105	624.3703475493697	99.998	0.6033	99.993	99.734	100.34	-0.0050888					29	16	2	0	0	0	0.96599	1	12744	12744		44.377	11.565	1	1025900	+		30697	20086	21211	21251	35183	35183					0.1150280515405484
KEVVLRRNVV	10	Unmodified	_KEVVLRRNVV_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.8878173828125	3	404.59094	1210.75099	1.6222	0.00065631	-1.7078	-0.00069095	-0.085607	-3.4636E-05	404.59051167227614	17.827	0.44915	17.673	17.358	17.807	-0.15403					15	8	3	0	0	0	0.03519	1	220	220		20.03	9.9266	1	27442	+		30698	27888	21212	21252	35184	35184					0.15404449342349835
KEVVLRRNVV	10	Unmodified	_KEVVLRRNVV_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	404.59094	1210.75099	3.8006	0.0015377	-3.3043	-0.0013369	0.4963	0.0002008	404.58960765619395	17.873	0.34714	17.623	17.421	17.768	-0.25049	-0.02527	-0.00020705	NaN	26.063	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30449	+		30699	27888	21212	21252							0.15404449342349835
KEVVTFED	8	Unmodified	_KEVVTFED_					0	0	0		FGA|p.S485F|1|0.31|ENSG00000171560|chr4:154585975-154585975|G/A|missense_variant	FGA|p.S485F|1|0.31|ENSG00000171560|chr4:154585975-154585975|G/A|missense_variant	FGA|p.S485F|1|0.31|ENSG00000171560|chr4:154585975-154585975|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.30816650390625	2	483.742565	965.470577	0.31875	0.00015419	0.24747	0.00011971	0.56621	0.0002739	483.74192974102846	78.692	0.39114	78.536	78.34	78.731	-0.15591					14	8	2	0	0	0	0.027866	1	9376	9376		45.952	20.502	1	106310			30700	17650	21213	21253	35185	35185					-0.01353931438939071
KEWFQNGR	8	Unmodified	_KEWFQNGR_					0	0	0			REV__ENSG00000187715|ENST00000405109|KBTBD12	REV__ENSG00000187715|ENST00000405109|KBTBD12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.3114624023438	2	532.76724	1063.51993	-0.93891	-0.00050022	2.8763	0.0015324	1.9374	0.0010322	532.7685564256562	23.352	1.0164	23.291	22.753	23.77	-0.06086					46	23	4	0	0	0	0.027866	1	842	842		30.504	0	1	723300	+		30701	27961	21214	21254	35186	35186					-0.009291786394896917
KEWIQQFSW	9	Unmodified	_KEWIQQFSW_					0	0	0			REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF	REV__ENST00000591551.1_1_19:44610541-44612434:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.8742980957031	3	417.876746	1250.60841	-0.89389	-0.00037354	-4.3084	-0.0018004	-5.2023	-0.0021739	417.8749360779523	37.248	1.253	37.028	36.647	37.9	-0.2195					71	32	3	0	0	0	0.89532	1	2962	2962		32.751	4.1738	1	4686300	+		30702	29149	21215	21255	35187	35187					-0.0068718311968041235
KEYEPPLRLLL	11	Unmodified	_KEYEPPLRLLL_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.60821533203125	3	457.606255	1369.79694	0.3464	0.00015852	3.4852	0.0015948	3.8316	0.0017534	457.60795031928546	98.588	2.0119	98.598	97.815	99.827	0.010231					130	46	3	0	0	0	1.0371	1	12547	12547		28.577	8.5463	1	424030	+		30703	24429	21216	21256	35188	35188					0.12683049733936969
KEYEPPLRLLL	11	Unmodified	_KEYEPPLRLLL_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.60870361328125	3	457.606255	1369.79694	0.77892	0.00035644	3.0599	0.0014002	3.8388	0.0017567	457.6077655587918	98.898	1.8258	98.761	97.927	99.752	-0.13625					121	44	3	0	0	0	1.0408	1	12191	12191		27.644	5.0823	1	383140	+		30704	24429	21216	21256	35189	35189					0.12683049733936969
KEYEPPLRLLL	11	Unmodified	_KEYEPPLRLLL_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.6085205078125	3	457.606255	1369.79694	0.98274	0.00044971	2.7784	0.0012714	3.7611	0.0017211	457.6076861640624	98.645	1.9478	98.521	97.849	99.796	-0.12413					135	49	3	0	0	0	1.0739	1	12235	12235		18.531	0.69791	1	291450	+		30705	24429	21216	21256	35190	35190					0.12683049733936969
KEYEPPLRLLL	11	Unmodified	_KEYEPPLRLLL_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	457.606255	1369.79694	0.55016	0.00025176	3.2855	0.0015035	3.8357	0.0017552	457.6078391724355	98.762	2.7712	98.762	97.058	99.829	0	0.040585	0.0001461	NaN	28.577	146	63	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409620	+		30706	24429	21216	21256							0.12683049733936969
KEYEPPLRLLL	11	Unmodified	_KEYEPPLRLLL_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	457.606255	1369.79694	0.81274	0.00037192	2.9363	0.0013437	3.749	0.0017156	457.60772790766197	98.748	2.1297	98.744	97.811	99.94	-0.0038834	0.022066	-0.00033334	NaN	28.577	131	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299670	+		30707	24429	21216	21256							0.12683049733936969
KEYLFLHRQMP	11	Unmodified	_KEYLFLHRQMP_					0	0	0			REV__nc|ENSG00000101977|P10911-6|MCF2	REV__nc|ENSG00000101977|P10911-6|MCF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.77923583984375	3	487.927223	1460.75984	1.706	0.00083242	0.68151	0.00033253	2.3875	0.0011649	487.92764925976525	25.089	1.2427	24.917	24.081	25.324	-0.17151					49	28	3	0	0	0	0.024759	1	1061	1061		23.378	5.5448	1	143490	+		30708	21273	21217	21257	35191	35191					0.047890549165003904
KFANHIFPT	9	Unmodified	_KFANHIFPT_					0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.3197021484375	2	537.790184	1073.56581	-0.24348	-0.00013094	-2.337	-0.0012568	-2.5805	-0.0013878	537.7890288381468	19.987	0.28924	19.819	19.62	19.909	-0.16774					9	5	2	0	0	0	0.024487	1	493	493		31.955	8.9124	1	26240	+		30709	26859	21218	21258	35192	35192					0.03197466542746952
KFANKVSLNC	10	Unmodified	_KFANKVSLNC_					0	0	0			REV__nc|ENSG00000228741|Q96N96-5|SPATA13	REV__nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.3079833984375	2	562.300059	1122.58556	-0.066263	-3.726E-05	0.4884	0.00027462	0.42213	0.00023736	562.3004086544288	67.626	0.37989	67.393	67.175	67.555	-0.23375					10	8	2	0	0	0	0.03519	1	7782	7782		19.997	1.7347	1	75034	+		30710	27521	21219	21259	35193	35193					0.02917474491187022
KFAQLEQPS	9	Unmodified	_KFAQLEQPS_					0	0	0			REV__ENSG00000197110|ENST00000413851|IFNL3	REV__ENSG00000197110|ENST00000413851|IFNL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2716064453125	2	524.277106	1046.53966	-0.81429	-0.00042691	3.8471	0.002017	3.0328	0.00159	524.2789402834521	39.618	1.0669	39.642	39.17	40.237	0.023727					52	29	2	0	0	0	0.024288	1	3360	3360		44.377	0	1	2155500	+		30711	27598	21220	21260	35194	35194					0.01825152580613576
KFARQVCKN	9	Unmodified	_KFARQVCKN_					0	0	0		EML4-MTA3|1|fusion;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	EML4-MTA3|1|fusion;ENSG00000057935|ENST00000405094|MTA3	EML4-MTA3|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.780029296875	2	547.300393	1092.58623	-0.90946	-0.00049775	2.0736	0.0011349	1.1642	0.00063716	547.3026613476544	31.101	0.42626	31.113	30.831	31.257	0.011797					13	9	2	0	0	0	0.024381	1	2044	2044		37.159	0	1	42617			30712	707;1208	21221	21261	35195	35195					0.0436431393093244
KFAVFGLG	8	Unmodified	_KFAVFGLG_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2278747558594	2	419.744714	837.474875	-0.47892	-0.00020102	-3.2397	-0.0013598	-3.7186	-0.0015609	419.74302449293106	25.896	0.34745	25.873	25.651	25.998	-0.023088					13	7	2	0	0	0	0.027866	1	1241	1241		23.037	4.7123	1	25517			30713	4269	21222	21262	35196	35196					0.04963622565287551
KFDEEEEEEEE	11	Unmodified	_KFDEEEEEEEE_					0	0	0			REV__ENST00000489842.1_1_9:135931263-135933364:+|nuORF	REV__ENST00000489842.1_1_9:135931263-135933364:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.77691650390625	3	481.18782	1440.54163	-0.044925	-2.1618E-05	-1.574	-0.00075738	-1.6189	-0.000779	481.18700295020864	27.818	0.40239	27.666	27.482	27.884	-0.15237					19	9	3	0	0	0	0.024856	1	1534	1534		13.508	10.656	1	104110	+		30714	24605	21223	21263	35197	35197					-0.1610197277336738
KFEKREFK	8	Unmodified	_KFEKREFK_					0	0	0			REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.3162231445312	2	556.316566	1110.61858	0.24107	0.00013411	-0.55491	-0.00030871	-0.31384	-0.0001746	556.3161671254682	22.591	0.59838	22.402	22.102	22.7	-0.18894					27	12	3	0	0	0	0.77775	1	823	823		60.972	5.4677	1	711500	+		30715	26699	21224	21264	35198	35198					0.0676942460556802
KFELRFNP	8	Unmodified	_KFELRFNP_					0	0	0		ENST00000523270.1_1_5:154238041-154239421:+|nuORF	ENST00000523270.1_1_5:154238041-154239421:+|nuORF	ENST00000523270.1_1_5:154238041-154239421:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7877197265625	2	525.790184	1049.56581	-0.71294	-0.00037486	-3.263	-0.0017157	-3.976	-0.0020905	525.7881782354665	29.487	1.1088	29.315	28.893	30.002	-0.17258					63	25	4	0	0	0	0.39824	1	1800	1800		97.473	1.2823	1	2740200			30716	16040	21225	21265	35199	35199					0.04301466542779053
KFFQQLRKL	9	Unmodified	_KFFQQLRKL_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3668823242188	2	604.369133	1206.72371	-0.63259	-0.00038232	-3.3139	-0.0020028	-3.9465	-0.0023851	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	0.94809	1	12894	12894		29.15	6.5699	1	4804600	+		30717	27989	21226	21266	35200	35200					0.12861965801994302
KFFSTVRRCI	10	Unmodified	_KFFSTVRRCI_					0	0	0		ENST00000338167.9_1_11:129979459-129980463:+|nuORF	ENST00000338167.9_1_11:129979459-129980463:+|nuORF	ENST00000338167.9_1_11:129979459-129980463:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5232238769531	3	419.569259	1255.68595	0.34092	0.00014304	2.86	0.0012	3.2009	0.001343	419.57022472978406	19.371	0.29712	19.211	19.034	19.331	-0.16079					8	5	2	0	0	0	0.03519	1	401	401		20.03	0	1	13114			30718	12435	21227	21267	35201	35201					0.06833131544863136
KFFSWTLEP	9	Unmodified	_KFFSWTLEP_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2;nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.3187866210938	2	577.797675	1153.5808	-0.38959	-0.00022511	4.1518	0.0023989	3.7622	0.0021738	578.3009477227674	68.541	0.65157	68.279	67.814	68.466	-0.26166					31	15	4	0	0	0	0.024436	1	7884	7884		30.504	0	1	132600			30719	4839	21228	21268	35202	35202					0.010149136201107467
KFFVCVIP	8	Unmodified	_KFFVCVIP_					0	0	0			REV__ENST00000229595.5_1_6:119215395-119215593:+|nuORF	REV__ENST00000229595.5_1_6:119215395-119215593:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.3055114746094	2	476.769874	951.525196	0.60335	0.00028766	-2.0394	-0.00097234	-1.4361	-0.00068468	476.7694495166303	91.639	0.55618	91.649	91.442	91.999	0.009407					21	12	2	0	0	0	0.027866	1	11510	11510		20.482	0	1	56537	+		30720	29400	21229	21269	35203	35203					0.0474940889877189
KFHLIVHV	8	Unmodified	_KFHLIVHV_					0	0	0			REV__ENSG00000269058|ENST00000269881|CALR3	REV__ENSG00000269058|ENST00000269881|CALR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2740478515625	2	496.805637	991.596721	-0.36585	-0.00018176	-1.3341	-0.00066277	-1.6999	-0.00084453	496.80465501613884	40.092	0.19081	39.98	39.904	40.095	-0.11223					6	4	2	0	0	0	0.027866	1	3490	3490		39.021	7.0666	1	24026	+		30721	29155	21230	21270	35204	35204					0.10058664647658588
KFHSGEKVL	9	Unmodified	_KFHSGEKVL_					0	0	0		ENSG00000005302|ENST00000312196|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3	ENSG00000005302|ENST00000312196|MSL3	ENSG00000005302|ENST00000312196|MSL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7975463867188	2	522.795466	1043.57638	-0.04255	-2.2245E-05	2.3707	0.0012394	2.3281	0.0012171	522.7967223459124	39.042	2.5625	38.817	37.785	40.347	-0.2257					174	69	4	0	0	0	0.6238	1	3264	3264		51.193	1.1682	1	2377000			30722	766	21231	21271	35205	35205					0.056334491971938405
KFHTFPQTAI	10	Unmodified	_KFHTFPQTAI_					0	0	0		nc|ENSG00000110680|P01258-2|CALCA;ENSG00000110680|ENST00000331587|CALCA	nc|ENSG00000110680|P01258-2|CALCA	nc|ENSG00000110680|P01258-2|CALCA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.7805786132812	2	595.321848	1188.62914	-0.15386	-9.1597E-05	-2.9441	-0.0017527	-3.098	-0.0018443	595.319955373899	22.535	0.59838	22.346	22.102	22.7	-0.18894					23	12	3	0	0	0	0.03519	1	781	781		37.812	1.3648	1	106660			30723	3054	21232	21272	35206	35206					0.04237407260029613
KFHTFPQTAI	10	Unmodified	_KFHTFPQTAI_					0	0	0		nc|ENSG00000110680|P01258-2|CALCA;ENSG00000110680|ENST00000331587|CALCA	nc|ENSG00000110680|P01258-2|CALCA	nc|ENSG00000110680|P01258-2|CALCA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	595.321848	1188.62914	-1.1782	-0.00070139	-1.9932	-0.0011866	-3.1714	-0.001888	595.3206623724229	22.716	0.36671	22.531	22.325	22.692	-0.18539	0.07738	0.0008176	NaN	45.972	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99093			30724	3054	21232	21272							0.04237407260029613
KFHTFPQTAI	10	Unmodified	_KFHTFPQTAI_					0	0	0		nc|ENSG00000110680|P01258-2|CALCA;ENSG00000110680|ENST00000331587|CALCA	nc|ENSG00000110680|P01258-2|CALCA	nc|ENSG00000110680|P01258-2|CALCA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	595.321848	1188.62914	0.27205	0.00016196	-3.4969	-0.0020818	-3.2248	-0.0019198	595.319670841827	22.685	0.50805	22.483	22.285	22.793	-0.20199	0.029878	-0.00097268	NaN	45.972	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102250			30725	3054	21232	21272							0.04237407260029613
KFIDTRSLV	9	Unmodified	_KFIDTRSLV_					0	0	0			REV__ENST00000480003.5_1_1:207958984-207966940:+|nuORF	REV__ENST00000480003.5_1_1:207958984-207966940:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7969360351562	2	539.816399	1077.61824	0.62929	0.0003397	-2.6121	-0.0014101	-1.9828	-0.0010704	539.8140126877963	77.496	0.17213	77.253	77.148	77.32	-0.24232					5	3	2	0	0	0	0.024495	1	9229	9229		26.693	0	1	79289	+		30726	33413	21233	21273	35207	35207					0.0825400488570267
KFIHELGF	8	Unmodified	_KFIHELGF_					0	0	0		ENST00000336095.10_1_20:3944626-3995914:-|nuORF	ENST00000336095.10_1_20:3944626-3995914:-|nuORF	ENST00000336095.10_1_20:3944626-3995914:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.79498291015625	2	495.774003	989.533452	0.68762	0.0003409	4.1946	0.0020796	4.8823	0.0024205	495.77672704949197	59.677	0.43979	59.48	59.173	59.613	-0.19742					16	10	2	0	0	0	0.027866	1	6561	6561		47.916	22.465	1	178340			30727	12400	21234	21274	35208	35208					0.03826679139751832
KFIIELVASN	10	Unmodified	_KFIIELVASN_					0	0	0			REV__ENST00000374994.8_2_9:101911867-101912029:+|nuORF	REV__ENST00000374994.8_2_9:101911867-101912029:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3297119140625	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.1265	1	11101	11101		24.519	0.99649	1	17705000	+		30728	31314	21235	21275	35209	35209					0.0881915819995811
KFIKKLGSVS	10	Unmodified	_KFIKKLGSVS_					0	0	0			REV__nc|ENSG00000164823|Q9Y236|OSGIN2	REV__nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.831298828125	2	553.850242	1105.68593	-0.31706	-0.0001756	-0.34366	-0.00019033	-0.66071	-0.00036594	553.849922126735	49.057	0.59447	48.875	48.558	49.153	-0.18206					31	15	3	0	0	0	0.03519	1	4849	4849		26.693	1.1189	1	750640	+		30729	25808	21236	21276	35210	35210					0.13731454816525002
KFIRDLVS	8	Unmodified	_KFIRDLVS_					0	0	0		ENST00000468296.5_1_3:75834033-75834192:-|nuORF;ENST00000471541.2_1_3:75790873-75834630:-|nuORF	ENST00000468296.5_1_3:75834033-75834192:-|nuORF	ENST00000468296.5_1_3:75834033-75834192:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.29266357421875	2	489.292559	976.570566	0.8017	0.00039227	-1.4299	-0.00069966	-0.62823	-0.00030739	489.2917336786911	37.276	0.69221	37.276	37.042	37.735	0					45	18	3	0	0	0	0.95679	1	3038	3038		44.117	1.7207	1	3911400			30730	14863	21237	21277	35211	35211					0.08134350685509162
KFIYAGLEP	9	Unmodified	_KFIYAGLEP_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|227|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|227|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7709350585938	2	519.286943	1036.55933	-0.75086	-0.00038991	-1.9753	-0.0010257	-2.7261	-0.0014156	519.2858659985278	94.485	0.57491	94.491	94.131	94.706	0.0059814					19	13	2	0	0	0	0.024457	1	11894	11894		37.159	17.799	1	113250	+		30731	36290	21238	21278	35212	35212					0.042515285913850676
KFIYAGLEP	9	Unmodified	_KFIYAGLEP_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|227|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|227|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.286943	1036.55933	-0.42917	-0.00022286	-1.8173	-0.00094373	-2.2465	-0.0011666	519.2857624938141	94.459	0.50056	94.459	94.244	94.745	0	0.0036191	3.3817E-05	NaN	29.15	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124700	+		30732	36290	21238	21278							0.042515285913850676
KFIYAGLEP	9	Unmodified	_KFIYAGLEP_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|227|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|227|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.286943	1036.55933	-0.29111	-0.00015117	-1.7968	-0.00093306	-2.0879	-0.0010842	519.2857347728411	94.416	0.45806	94.416	94.189	94.647	-0.00022888	-0.039507	5.514E-05	NaN	29.15	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106310	+		30733	36290	21238	21278							0.042515285913850676
KFKDSPLQPP	10	Unmodified	_KFKDSPLQPP_					0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.8258666992188	2	578.821681	1155.62881	3.0075	0.0017408	3.1922	0.0018477	6.1998	0.0035886	578.823311770708	19.018	0.49229	19.081	18.845	19.337	0.063307					20	9	3	0	0	0	1.118	1	326	326		30.318	2.4355	1	87941	+		30734	21741	21239	21279	35213	35213					0.057219875401415266
KFKIKVPD	8	Unmodified	_KFKIKVPD_					0	0	0			REV__ENSG00000146215|ENST00000372569|CRIP3	REV__ENSG00000146215|ENST00000372569|CRIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.20318603515625	2	487.805303	973.596052	-0.0074533	-3.6357E-06	0.53995	0.00026339	0.5325	0.00025975	487.8054115316419	39.866	0.656	39.636	39.352	40.008	-0.23021					25	16	2	0	0	0	0.027866	1	3377	3377		29.15	18.284	1	161450	+		30735	24468	21240	21280	35214	35214					0.10819825207954636
KFKLRFLL	8	Unmodified	_KFKLRFLL_					0	0	0			REV__ARL4D|p.Y39F|1|0.32|ENSG00000175906|chr17:43399848-43399848|A/T|missense_variant	REV__ARL4D|p.Y39F|1|0.32|ENSG00000175906|chr17:43399848-43399848|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7842407226562	2	532.852587	1063.69062	-0.99665	-0.00053107	0.89754	0.00047825	-0.099114	-5.2813E-05	533.3529718808904	45.729	0.23456	45.577	45.412	45.647	-0.15156					9	6	2	0	0	0	0.027866	1	4429	4429		8.8223	0	1	656950	+		30736	19168	21241	21281	35215	35215					0.16132383749959445
KFKPIKVD	8	Unmodified	_KFKPIKVD_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2031555175781	2	487.805303	973.596052	-0.41965	-0.00020471	0.43475	0.00021207	0.015098	7.3649E-06	487.8053071391437	39.759	0.42697	39.61	39.394	39.821	-0.1497					20	10	2	0	0	0	0.027866	1	3373	3373		10.866	0	1	177360	+		30737	22797	21242	21282	35216	35216					0.10819825207954636
KFKSEKLVPT	10	Unmodified	_KFKSEKLVPT_					0	0	0			REV__nc|ENSG00000144848|Q9NT62-2|ATG3	REV__nc|ENSG00000144848|Q9NT62-2|ATG3	MSMS	OPSCC_39_ClassI_Rep-3	3	588.8417358398438	2	588.852981	1175.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.244	1	18.308	17.808	18.808	0.063307								0	0	0	0.77271	1	228	228		18.262	4.125	1		+		30738	24368	21243	21283	35217	35217					0.11059133608341654
KFLKKLNHREL	11	Unmodified	_KFLKKLNHREL_					0	0	0		ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	ENST00000377325.1_1_6:28056349-28056487:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.9613952636719	3	475.961144	1424.8616	1.484	0.00070634	-1.5307	-0.00072854	-0.046635	-2.2197E-05	475.9602974187592	63.466	1.2583	63.466	63.126	64.384	0					106	34	5	0	0	0	1.0648	1	7429	7429		21.032	1.7696	1	6733000			30739	13205	21244	21284	35218	35218					0.1661666933057404
KFLKRITD	8	Unmodified	_KFLKRITD_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2750549316406	2	510.813659	1019.61277	-1.2788	-0.00065322	0.2933	0.00014982	-0.98549	-0.0005034	510.81314892133133	90.411	0.95146	90.411	89.936	90.887	0					86	22	6	0	0	0	0.027866	1	11495	11495		31.955	8.9124	1	1379100			30740	6006	21245	21285	35219	35219					0.10374326093892705
KFLLQLAGSV	10	Unmodified	_KFLLQLAGSV_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2774047851562	2	538.329142	1074.64373	0.19507	0.00010501	-0.32382	-0.00017432	-0.12875	-6.9311E-05	538.3288386851023	84.619	0.54918	84.416	84.124	84.673	-0.20329					28	12	3	0	0	0	0.03519	1	10205	10205		30.318	1.1682	1	217360	+		30741	20986	21246	21286	35220	35220					0.10939479408125408
KFLPGLLGQ	9	Unmodified	_KFLPGLLGQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7521667480469	2	486.797478	971.580402	-0.31809	-0.00015484	0.75467	0.00036737	0.43659	0.00021253	486.79779823973905	75.38	0.46502	75.135	74.838	75.303	-0.24455					16	11	2	0	0	0	0.02435	1	9226	9226		42.396	0	1	83954	+		30742	27387	21247	21287	35221	35221					0.09347538690894908
KFLPGPKNI	9	Unmodified	_KFLPGPKNI_					0	0	0			REV__ENSG00000184500|ENST00000394236|PROS1	REV__ENSG00000184500|ENST00000394236|PROS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2922668457031	2	507.310752	1012.60695	-0.29009	-0.00014717	-4.3819	-0.002223	-4.6719	-0.0023701	507.3087105478312	52.08	0.68985	51.933	51.676	52.366	-0.14735					28	18	2	0	0	0	0.024381	1	5553	5553		29.15	9.7896	1	3133700	+		30743	27676	21248	21288	35222	35222					0.10115227582218722
KFLPVHLSP	9	Unmodified	_KFLPVHLSP_					0	0	0		ENST00000477780.2_1_1:154247547-154247742:+|nuORF;ENST00000459914.1_1_1:154247547-154248174:+|nuORF	ENST00000477780.2_1_1:154247547-154247742:+|nuORF	ENST00000477780.2_1_1:154247547-154247742:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2326049804688	2	519.310752	1036.60695	0.044099	2.2901E-05	2.6159	0.0013585	2.66	0.0013814	519.3119569654019	46.363	1.9078	46.101	45.451	47.358	-0.26118					81	51	2	0	0	0	0.024457	1	4361	4361		45.952	5.3793	1	343400			30744	14643	21249	21289	35223	35223					0.09011227582209358
KFLRFRRSLLL	11	Unmodified	_KFLRFRRSLLL_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.292724609375	3	483.645267	1447.91397	0.66153	0.00031995	2.2659	0.0010959	2.9274	0.0014158	483.6462071524136	55.451	1.0561	55.451	54.979	56.035	0					59	29	3	0	0	0	0.024873	1	6148	6148		6.001	0	1	153200			30745	1218	21250	21290	35224	35224					0.20793252464227407
KFLRKVVN	8	Unmodified	_KFLRKVVN_					0	0	0			REV__nc|ENSG00000159069|Q969U6-2|FBXW5	REV__nc|ENSG00000159069|Q969U6-2|FBXW5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.32513427734375	2	502.324194	1002.63383	0.13296	6.6791E-05	3.8723	0.0019452	4.0053	0.0020119	502.32602986909205	106.14	0.61324	106.14	105.79	106.4	0.00015259					42	23	3	0	0	0	1.0574	1	13549	13549		26.796	1.3459	1	584480	+		30746	25229	21251	21291	35225	35225					0.13262336193417923
KFMVFNPEP	9	Unmodified	_KFMVFNPEP_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.3240966796875	2	554.778428	1107.5423	0.15087	8.3699E-05	-0.35331	-0.00019601	-0.20244	-0.00011231	554.7785711520316	50.634	0.55151	50.453	50.209	50.76	-0.18071					31	14	3	0	0	0	0.024344	1	5164	5164		54.776	30.257	1	849770			30747	10614	21252	21292	35226	35226					-0.007167152860802162
KFMVKDEVK	9	Unmodified	_KFMVKDEVK_					0	0	0			REV__ENST00000468790.1_1_10:115479033-115479252:+|nuORF	REV__ENST00000468790.1_1_10:115479033-115479252:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3111572265625	2	562.312635	1122.61072	0.47833	0.00026897	-3.5216	-0.0019802	-3.0433	-0.0017113	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.17822	1	11015	11015		93.195	0.052222	1	3090500	+		30748	33113	21253	21293	35227	35227					0.0543152929376447
KFNQGSVEY	9	Unmodified	_KFNQGSVEY_					0	0	0			REV__ENSG00000180626|ENST00000575779|ZNF594	REV__ENSG00000180626|ENST00000575779|ZNF594	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2591552734375	2	536.258914	1070.50327	-0.53837	-0.00028871	0.46769	0.0002508	-0.070679	-3.7902E-05	536.2591380997773	53.392	0.96784	53.392	52.974	53.942	0					78	26	4	0	0	0	0.62163	1	5769	5769		51.335	3.6781	1	6536600	+		30749	27350	21254	21294	35228	35228					-0.029157243160852886
KFNQGSVEY	9	Unmodified	_KFNQGSVEY_					0	0	0			REV__ENSG00000180626|ENST00000575779|ZNF594	REV__ENSG00000180626|ENST00000575779|ZNF594	MSMS	OPSCC_40_ClassI_Rep-1	4	536.2589111328125	2	536.258914	1070.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.455	1	53.327	52.827	53.827	-0.12705								0	0	0	0.47068	1	5604	5604		56.721	10.769	1		+		30750	27350	21254	21294	35229	35229					-0.029157243160852886
KFNSTQIAAMA	11	Unmodified	_KFNSTQIAAMA_					0	0	0		ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1;GXYLT1|p.L311Qfs*11|1|0.09|ENSG00000151233|chr12:42097966-42097966|A/-|frameshift_variant	ENSG00000151233|ENST00000398675|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	591.2988891601562	2	591.302798	1180.59104	-1.1152	-0.00065941	-2.3142	-0.0013684	-3.4293	-0.0020278	591.3011692400589	64.861	1.1869	64.606	64.038	65.225	-0.25563					72	29	4	0	0	0	0.96599	1	7381	7381		44.377	1.9027	1	1121600			30751	6188	21255	21295	35230	35230					0.007971532830197248
KFPSEGTHSQ	10	Unmodified	_KFPSEGTHSQ_					0	0	0			REV__ENSG00000186230|ENST00000334181|ZNF749	REV__ENSG00000186230|ENST00000334181|ZNF749	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2622680664062	2	559.26727	1116.51999	0.21349	0.0001194	-4.4302	-0.0024777	-4.2167	-0.0023583	559.264865059526	87.413	0.49555	87.413	87.194	87.69	0					17	11	2	0	0	0	0.03519	1	11034	11034		85.862	9.0877	1	74463	+		30752	27839	21256	21296	35231	35231					-0.033612234301244825
KFPSEGTHSQ	10	Unmodified	_KFPSEGTHSQ_					0	0	0			REV__ENSG00000186230|ENST00000334181|ZNF749	REV__ENSG00000186230|ENST00000334181|ZNF749	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.26727	1116.51999	-0.16749	-9.3672E-05	-0.7117	-0.00039803	-0.87919	-0.0004917	559.266995617028	87.66	0.41954	87.522	87.248	87.667	-0.13734	0.05481	0.0028236	NaN	85.862	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61775	+		30753	27839	21256	21296							-0.033612234301244825
KFQAMDISL	9	Unmodified	_KFQAMDISL_					0	0	0		CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7598266601562	2	526.775885	1051.53722	-1.1266	-0.00059346	-0.83389	-0.00043927	-1.9605	-0.0010327	526.7752777963735	80.317	2.2658	80.317	78.993	81.258	0					116	54	3	0	0	0	0.023635	1	10026	10026		76.774	0	1	1152100			30754	235	21257	21297	35232	35232					0.013509808512935706
KFQLPVFL	8	Unmodified	_KFQLPVFL_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.30029296875	2	496.302396	990.590239	-0.21494	-0.00010668	-4.4781	-0.0022225	-4.693	-0.0023291	496.3001390987475	33.313	1.6784	33.113	32.813	34.492	-0.20019					104	42	5	0	0	0	0.88442	1	2395	2395		52.299	0	1	12763000			30755	9834	21258	21298	35233	35233					0.09456726696282658
KFRAAVVICV	10	Unmodified	_KFRAAVVICV_					0	0	0		ENST00000320248.3_1_8:1954634-1955009:+|nuORF	ENST00000320248.3_1_8:1954634-1955009:+|nuORF	ENST00000320248.3_1_8:1954634-1955009:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3324584960938	2	553.331162	1104.64777	-0.20591	-0.00011394	2.4874	0.0013763	2.2815	0.0012624	553.3323900913857	95.407	1.2671	95.407	95.007	96.274	0					99	29	5	0	0	0	1.0142	1	12184	12184		44.117	16.035	1	4511400			30756	12190	21259	21299	35234	35234					0.09963245630206075
KFRAMRKIKVK	11	Unmodified	_KFRAMRKIKVK_					0	0	0		ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	ENST00000530606.1_1_10:77055306-77055468:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.2269592285156	3	468.970986	1403.89113	-0.61265	-0.00028731	0.3996	0.0001874	-0.21305	-9.9914E-05	468.9711285381176	48.987	0.71921	48.887	48.506	49.226	-0.1008					32	18	3	0	0	0	0.024876	1	4950	4950		5.6988	0.55642	1	307390			30757	16237	21260	21300	35235	35235					0.20533910075073436
KFRKAPGSFL	10	Unmodified	_KFRKAPGSFL_					0	0	0		ENST00000409484.5_1_2:172411796-172411952:+|nuORF	ENST00000409484.5_1_2:172411796-172411952:+|nuORF	ENST00000409484.5_1_2:172411796-172411952:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.843017578125	2	575.840208	1149.66586	0.50468	0.00029062	4.3999	0.0025336	4.9045	0.0028242	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.98754	1	11232	11232		47.657	6.2307	1	1452500			30758	13780	21261	21301	35236	35236					0.0970170387656708
KFRLVYRTK	9	Unmodified	_KFRLVYRTK_					0	0	0			REV__ENST00000519132.5_1_5:178032263-178039506:-|nuORF	REV__ENST00000519132.5_1_5:178032263-178039506:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9229431152344	3	404.252147	1209.73461	0.56735	0.00022935	-0.8754	-0.00035388	-0.30805	-0.00012453	404.58608225969283	26.384	0.41042	26.215	26.052	26.462	-0.16816					15	10	2	0	0	0	0.024409	1	1383	1383		33.922	11.342	1	61954	+		30759	34252	21262	21302	35237	35237					0.13813368176261065
KFRNGWENL	9	Unmodified	_KFRNGWENL_					0	0	0			REV__nc|ENSG00000039068|P12830-2|CDH1	REV__nc|ENSG00000039068|P12830-2|CDH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.8270874023438	2	582.301447	1162.58834	0.15113	8.8004E-05	-0.88108	-0.00051305	-0.72994	-0.00042505	582.3009340258593	65.339	0.45233	65.376	65.254	65.706	0.037376					21	12	2	0	0	0	0.024319	1	7653	7653		47.657	6.8792	1	208830	+		30760	20081	21263	21303	35238	35238					0.013550659403790632
KFRNGWENL	9	Unmodified	_KFRNGWENL_					0	0	0			REV__nc|ENSG00000039068|P12830-2|CDH1	REV__nc|ENSG00000039068|P12830-2|CDH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	582.301447	1162.58834	-1.0251	-0.00059689	0.69965	0.00040741	-0.3254	-0.00018948	582.301949259072	65.708	0.60127	65.435	65.195	65.796	-0.27282	0.1669	-5.3473E-05	NaN	56.721	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220970	+		30761	20081	21263	21303							0.013550659403790632
KFRRLPKNA	9	Unmodified	_KFRRLPKNA_					0	0	0			REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.7722778320312	2	565.351274	1128.688	0.2383	0.00013473	2.3469	0.0013268	2.5852	0.0014615	565.3525384267042	88.002	2.0782	87.974	86.865	88.944	-0.027657					134	49	4	0	0	0	0.024477	1	10963	10963		27.882	14.923	1	1040000	+		30762	20840	21264	21304	35239	35239					0.12879928344977998
KFRTRKSTGL	10	Unmodified	_KFRTRKSTGL_					0	0	0			REV__ENST00000295190.8_1_2:230933391-230933565:-|nuORF	REV__ENST00000295190.8_1_2:230933391-230933565:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.3626098632812	2	597.359296	1192.70404	0.26733	0.00015969	-1.1499	-0.00068693	-0.88261	-0.00052723	597.3584820835335	98.719	1.4456	98.583	98.147	99.592	-0.13625					99	34	4	0	0	0	1.1265	1	12190	12190		24.519	0	1	2905600	+		30763	29976	21265	21305	35240	35240					0.11539589791209437
KFSKDSKKI	9	Unmodified	_KFSKDSKKI_					0	0	0			REV__ENSG00000238210|ENST00000427686|ETDA	REV__ENSG00000238210|ENST00000427686|ETDA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.334716796875	2	540.824224	1079.63389	-0.75311	-0.0004073	-2.0137	-0.0010891	-2.7668	-0.0014964	540.8232004148562	78.894	0.29904	78.739	78.557	78.856	-0.15591					9	6	2	0	0	0	0.024427	1	9424	9424		34.173	8.7224	1	32930	+		30764	28856	21266	21306	35241	35241					0.09726291402762399
KFSKKNKSS	9	Unmodified	_KFSKKNKSS_					0	0	0			REV__nc|ENSG00000144118|P11234-3|RALB	REV__nc|ENSG00000144118|P11234-3|RALB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.3040771484375	2	527.306198	1052.59784	0.57506	0.00030323	-3.3221	-0.0017518	-2.7471	-0.0014485	527.3045102353642	98.07	1.4368	97.933	97.377	98.814	-0.13625					64	33	3	0	0	0	0.85329	1	12141	12141		35.618	5.1146	1	643280	+		30765	36743	21267	21307	35242	35242					0.07364834225904815
KFSPKMTSL	9	Unmodified	_KFSPKMTSL_					0	0	0		ENST00000348035.8_1_7:6442202-6442400:+|nuORF	ENST00000348035.8_1_7:6442202-6442400:+|nuORF	ENST00000348035.8_1_7:6442202-6442400:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7850952148438	2	519.786253	1037.55795	-0.58564	-0.00030441	-2.9248	-0.0015203	-3.5105	-0.0018247	519.7846388972569	78.101	0.98548	78.101	77.672	78.658	0					69	23	4	0	0	0	0.56934	1	9657	9657		54.776	1.8396	1	4254600			30766	12575	21268	21308	35243	35243					0.04067571230984868
KFSPKMTSL	9	Unmodified	_KFSPKMTSL_					0	0	0		ENST00000348035.8_1_7:6442202-6442400:+|nuORF	ENST00000348035.8_1_7:6442202-6442400:+|nuORF	ENST00000348035.8_1_7:6442202-6442400:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7849731445312	2	519.786253	1037.55795	-0.68211	-0.00035455	-2.751	-0.0014299	-3.4331	-0.0017845	519.7847314319765	78.115	0.95178	78.13	77.739	78.69	0.015907					76	22	5	0	0	0	0.48817	1	9581	9581		60.118	3.3972	1	4017700			30767	12575	21268	21308	35244	35244					0.04067571230984868
KFSRYWRRWN	10	Unmodified	_KFSRYWRRWN_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3136291503906	3	500.265338	1497.77419	-0.20146	-0.00010078	-2.7733	-0.0013874	-2.9747	-0.0014882	500.26441857500197	76.172	0.19766	76.172	76.11	76.308	0					8	4	3	0	0	0	0.03519	1	9388	9388		25.126	15.914	1	158700			30768	6175	21269	21309	35245	35245					0.04520888179695248
KFTKLCEF	8	Unmodified	_KFTKLCEF_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2793884277344	2	508.267696	1014.52084	-0.75208	-0.00038226	-1.7468	-0.00088782	-2.4988	-0.0012701	508.2669384510847	50.36	0.69595	50.36	49.913	50.609	0					33	20	3	0	0	0	0.027866	1	5191	5191		58.782	16.307	1	1648800			30769	9072	21270	21310	35246	35246					0.014158996852074779
KFVFKTRAC	9	Unmodified	_KFVFKTRAC_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10;DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.30615234375	2	550.307687	1098.60082	-0.23515	-0.0001294	-3.2859	-0.0018082	-3.521	-0.0019376	550.3056695295984	16.588	0.30823	16.38	16.211	16.519	-0.20777					19	10	3	0	0	0	1.0192	1	71	71		16.473	0.83134	1	50314			30770	4946	21271	21311	35247	35247					0.05546386079072363
KFVKRKVMD	9	Unmodified	_KFVKRKVMD_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8436889648438	2	575.841894	1149.66923	-0.26489	-0.00015253	2.1267	0.0012247	1.8619	0.0010721	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	0.87448	1	11488	11488		34.173	9.9698	1	4946400			30771	10159	21272	21312	35248	35248					0.10038630658914371
KFVKRKVMD	9	Unmodified	_KFVKRKVMD_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8428344726562	2	575.841894	1149.66923	-0.10957	-6.3095E-05	1.9835	0.0011422	1.8739	0.0010791	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	0.87448	1	11537	11537		34.173	1.3601	1	4935500			30772	10159	21272	21312	35249	35249					0.10038630658914371
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3545532226562	2	611.354834	1220.69511	-1.2666	-0.00077434	3.2365	0.0019786	1.9699	0.0012043	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.013	1	11633	11633		33.922	3.6039	1	3820300	+		30773	25594	21273	21313	35250	35250					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3564453125	2	611.354834	1220.69511	-0.81332	-0.00049722	2.9276	0.0017898	2.1143	0.0012926	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.0075	4	11984	11915;11984;12008;12020		35.152	4.7516	1	11166000	+		30774	25594	21273	21313	35251;35252;35253;35254	35252					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3560791015625	2	611.354834	1220.69511	-0.32068	-0.00019605	2.5162	0.0015383	2.1955	0.0013422	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	0.98542	5	11997	11997;12021;12033;12057;12069		40.058	8.4239	1	11218000	+		30775	25594	21273	21313	35255;35256;35257;35258;35259	35255					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3560180664062	2	611.354834	1220.69511	-1.352	-0.00082658	3.5207	0.0021524	2.1687	0.0013258	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	0.94988	5	11992	11897;11956;11968;11992;12028		47.96	12.807	1	11699000	+		30776	25594	21273	21313	35260;35261;35262;35263;35264	35263					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.35693359375	2	611.354834	1220.69511	-1.8097	-0.0011063	3.9907	0.0024397	2.181	0.0013334	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	0.90725	2	11695	11695;11743		51.193	10.415	1	13060000	+		30777	25594	21273	21313	35265;35266	35265					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3517456054688	2	611.354834	1220.69511	-0.35919	-0.00021959	2.1332	0.0013041	1.774	0.0010846	611.3559902690897	92.567	2.8634	92.445	90.59	93.453	-0.12241					191	67	5	0	0	0	1.013	1	11465	11465		33.922	1.1092	1	4932800	+		30778	25594	21273	21313	35267	35267					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3567504882812	2	611.354834	1220.69511	0.14542	8.89E-05	2.1046	0.0012867	2.25	0.0013756	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	0.95882	2	11697	11697;11733		45.972	18.09	1	13233000	+		30779	25594	21273	21313	35268;35269	35268					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3525390625	2	611.354834	1220.69511	-0.19635	-0.00012004	1.9932	0.0012186	1.7969	0.0010985	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.0344	1	11438	11438		29.17	2.374	1	5237500	+		30780	25594	21273	21313	35270	35270					0.0935948011056098
KFVKTANLVMA	11	Unmodified	_KFVKTANLVMA_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.356201171875	2	611.354834	1220.69511	-0.45812	-0.00028007	2.6555	0.0016234	2.1974	0.0013434	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.0075	2	11694	11694;11706		35.152	2.3396	1	13365000	+		30781	25594	21273	21313	35271;35272	35271					0.0935948011056098
KFWLIRSL	8	Unmodified	_KFWLIRSL_					0	0	0			REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.29296875	2	531.826569	1061.63859	-0.37558	-0.00019974	-3.5366	-0.0018809	-3.9122	-0.0020806	531.8245412464871	31.457	0.45101	31.216	30.995	31.446	-0.24109					20	11	2	0	0	0	0.027866	1	2096	2096		35.618	0	1	349740	+		30782	31970	21274	21314	35273	35273					0.11023220336164741
KFWRVIET	8	Unmodified	_KFWRVIET_					0	0	0			REV__ENSG00000178764|ENST00000314393|ZHX2	REV__ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7969360351562	2	539.805834	1077.59712	0.64058	0.00034579	2.1757	0.0011745	2.8163	0.0015202	539.8067269886382	77.6	0.2567	77.358	77.19	77.447	-0.24232					8	5	2	0	0	0	0.027866	1	9229	9229		30.504	1.3541	1	137460	+		30783	27204	21275	21315	35274	35274					0.06142039576843672
KFYAVLKG	8	Unmodified	_KFYAVLKG_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2501525878906	2	463.278921	924.543289	-0.52096	-0.00024135	-2.9668	-0.0013745	-3.4878	-0.0016158	463.2772688727765	48.309	0.5807	48.156	47.924	48.505	-0.15301					26	16	2	0	0	0	0.027866	1	4867	4867		42.474	3.6683	1	224790			30784	5849	21276	21316	35275	35275					0.0779986714513825
KFYHSWHRIQP	11	Unmodified	_KFYHSWHRIQP_					0	0	0			REV__ENST00000439811.1_1_6:112683280-112683757:-|nuORF	REV__ENST00000439811.1_1_6:112683280-112683757:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7918701171875	3	500.261594	1497.76295	0.045429	2.2727E-05	-4.1801	-0.0020911	-4.1346	-0.0020684	500.25943958974864	52.373	0.19793	52.465	52.404	52.602	0.091938					7	4	2	0	0	0	0.024851	1	5548	5548		9.6461	4.76	1	80847	+		30785	32514	21277	21317	35276	35276					0.03398066085537721
KGAADTTIIL	10	Unmodified	_KGAADTTIIL_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.79498291015625	2	501.795132	1001.57571	-0.5072	-0.00025451	-0.059366	-2.979E-05	-0.56657	-0.0002843	501.79501976706814	50.147	0.79122	50.147	49.62	50.411	0					78	22	5	0	0	0	0.37169	4	5230	5207;5218;5230;5243		101.6	22.15	1	8450300			30786	4734	21278	21318	35277;35278;35279;35280	35279					0.07498609757476515
KGAADTTIIL	10	Unmodified	_KGAADTTIIL_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7950134277344	2	501.795132	1001.57571	-0.086906	-4.3609E-05	-0.46263	-0.00023215	-0.54954	-0.00027576	501.79482640565107	50.297	0.75023	50.146	49.708	50.458	-0.1512					68	21	4	0	0	0	0.48123	2	5218	5218;5243		90.37	18.91	1	9437100			30787	4734	21278	21318	35281;35282	35281					0.07498609757476515
KGAADTTIIL	10	Unmodified	_KGAADTTIIL_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000442060.7_1_5:118862877-118877689:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.794921875	2	501.795132	1001.57571	-0.0037368	-1.8751E-06	-0.52952	-0.00026571	-0.53326	-0.00026759	501.79478656848715	50.013	0.75963	50.094	49.584	50.344	0.08099					70	21	4	0	0	0	0.40067	1	5148	5148		98.629	21.855	1	9564100			30788	4734	21278	21318	35283	35283					0.07498609757476515
KGAELLRA	8	Unmodified	_KGAELLRA_					0	0	0			REV__nc|ENSG00000196177|P45954-2|ACADSB	REV__nc|ENSG00000196177|P45954-2|ACADSB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.73797607421875	2	429.263802	856.513051	-0.56091	-0.00024078	0.82078	0.00035233	0.25987	0.00011155	429.2640562943788	24.133	0.91548	24.133	23.737	24.653	0					29	20	2	0	0	0	0.027866	1	1091	1091		38.806	0	1	182720	+		30789	28139	21279	21319	35284	35284					0.07905508479939272
KGAEPIGQV	9	Unmodified	_KGAEPIGQV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7532958984375	2	449.753267	897.491981	-0.32369	-0.00014558	0.46767	0.00021034	0.14398	6.4756E-05	449.7533521821355	40.049	0.74268	39.937	39.64	40.382	-0.11223					32	19	2	0	0	0	0.17845	1	3479	3479		93.143	0	1	1624200	+		30790	20941	21280	21320	35285	35285					0.03913498380427427
KGAEPIGQV	9	Unmodified	_KGAEPIGQV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.753173828125	2	449.753267	897.491981	-0.69607	-0.00031306	0.95773	0.00043074	0.26166	0.00011768	449.7535514740161	40.132	0.82289	40.155	39.907	40.73	0.023006					33	22	2	0	0	0	0.2101	1	3451	3451		87.696	0	1	1508600	+		30791	20941	21280	21320	35286	35286					0.03913498380427427
KGAEPIGQV	9	Unmodified	_KGAEPIGQV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.753267	897.491981	0.46392	0.00020865	-0.38485	-0.00017309	0.079078	3.5565E-05	449.75295754134436	39.981	0.7513	39.981	39.696	40.448	0	-0.043698	-0.00065586	NaN	93.143	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360500	+		30792	20941	21280	21320							0.03913498380427427
KGAEPIGQV	9	Unmodified	_KGAEPIGQV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	449.753267	897.491981	-0.32369	-0.00014558	0.46767	0.00021034	0.14398	6.4756E-05	449.7533521821355	40.049	0.74268	39.937	39.64	40.382	-0.11223	-0.087359	0.00011099	NaN	93.143	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1624200	+		30793	20941	21280	21320							0.03913498380427427
KGAEPIGQV	9	Unmodified	_KGAEPIGQV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	449.753267	897.491981	-0.69607	-0.00031306	0.95773	0.00043074	0.26166	0.00011768	449.7535514740161	40.132	0.82289	40.155	39.907	40.73	0.023006	0.13106	0.0005518	NaN	93.143	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1508600	+		30794	20941	21280	21320							0.03913498380427427
KGAGGRAEP	9	Unmodified	_KGAGGRAEP_					0	0	0			REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.7304382324219	2	421.727584	841.440614	-1.0107	-0.00042622	-1.1282	-0.00047579	-2.1388	-0.00090201	421.7276577069098	28.586	1.0364	28.586	28.113	29.149	0					53	24	3	0	0	0	0.26966	2	1695	1681;1695		79.713	10.085	1	1294900	+		30795	34103	21281	21321	35287;35288	35288					0.013551744063761362
KGAIRKLN	8	Unmodified	_KGAIRKLN_					0	0	0			REV__nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	REV__nc|ENSG00000196275|Q86UP8-4|GTF2IRD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.28173828125	2	450.292894	898.571235	1.2493	0.00056256	-2.2156	-0.00099766	-0.96626	-0.0004351	450.2919007074485	51.34	0.27591	51.229	51.051	51.327	-0.11163					9	6	2	0	0	0	0.027866	1	5252	5252		26.796	7.4361	1	62876	+		30796	37052	21282	21322	35289	35289					0.11789190125216464
KGAKAKGEL	9	Unmodified	_KGAKAKGEL_					0	0	0			REV__nc|ENSG00000159082|O43426-5|SYNJ1	REV__nc|ENSG00000159082|O43426-5|SYNJ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7481994628906	2	451.276909	900.539266	-0.20074	-9.0588E-05	-0.030229	-1.3642E-05	-0.23097	-0.00010423	451.2767177827642	30.877	0.46326	30.951	30.75	31.213	0.074316					22	10	3	0	0	0	0.024319	1	1999	1999		47.657	3.5405	1	175640	+		30797	36822	21283	21323	35290	35290					0.08501777651417797
KGAKAQTK	8	Unmodified	_KGAKAQTK_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.2384033203125	2	416.255977	830.497401	2.2717	0.00094562	-2.3238	-0.00096728	-0.052046	-2.1664E-05	416.2548081569826	19.705	0.62736	19.771	19.587	20.215	0.066195					16	12	2	0	0	0	0.027866	1	421	421		17.365	0	1	49476	+		30798	25924	21284	21324	35291	35291					0.07537221962888907
KGAKPWLL	8	Unmodified	_KGAKPWLL_					0	0	0			REV__ENSG00000010319|ENST00000231721|SEMA3G	REV__ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	456.786913	911.559273	-0.36262	-0.00016564	-3.5898	-0.0016398	-3.9524	-0.0018054	456.78507568776547	30.395	0.54194	30.404	30.123	30.665	0.0086708					21	12	2	0	0	0	0.027866	1	1935	1935		28.254	9.9299	1	141970	+		30799	19904	21285	21325	35292	35292					0.09995573382036582
KGALPCEC	8	Unmodified	_KGALPCEC_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.7139587402344	2	410.688224	819.361895	-0.26735	-0.0001098	3.3312	0.0013681	3.0639	0.0012583	410.68844781604537	27.959	0.391	27.807	27.689	28.08	-0.15195					11	9	2	0	0	0	0.027866	1	1566	1566		25.45	13.243	1	46427			30800	1163	21286	21326	35293	35293					-0.05501137214582741
KGARPQCGAP	10	Unmodified	_KGARPQCGAP_					0	0	0			REV__ENST00000261402.6_1_12:106532525-106533446:-|nuORF	REV__ENST00000261402.6_1_12:106532525-106533446:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2700500488281	2	492.755818	983.497083	-1.2741	-0.00062784	4.4245	0.0021802	3.1504	0.0015524	492.7578221324185	44.283	0.58861	44.179	43.96	44.549	-0.10468					31	15	3	0	0	0	0.03519	1	4172	4172		27.882	8.7787	1	724190	+		30801	29623	21287	21327	35294	35294					0.0046747897139312045
KGATGRFF	8	Unmodified	_KGATGRFF_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7615051269531	2	442.24287	882.471186	-1.44	-0.00063682	-2.7909	-0.0012342	-4.2309	-0.0018711	442.241503627833	38.443	0.65866	38.47	38.264	38.923	0.027275					28	17	2	0	0	0	0.027866	1	3230	3230		37.159	0	1	362270	+		30802	22161	21288	21328	35295	35295					0.025249527914297687
KGAWGLAK	8	Unmodified	_KGAWGLAK_					0	0	0			REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.2071533203125	2	415.747788	829.481023	0.12304	5.1155E-05	1.0963	0.00045579	1.2194	0.00050695	415.7481891248323	36.312	0.79757	36.096	35.812	36.61	-0.21661					43	20	4	0	0	0	0.027866	1	2904	2904		16.473	0	1	841650	+		30803	33431	21289	21329	35296	35296					0.05946140796800137
KGAWGLAK	8	Unmodified	_KGAWGLAK_					0	0	0			REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	REV__ENST00000480730.5_1_6:33271836-33272001:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	415.747788	829.481023	-0.56642	-0.00023549	1.1238	0.00046721	0.55736	0.00023172	415.7480141118693	36.291	0.47158	36.086	35.852	36.323	-0.20518	-0.005023	3.1566E-06	NaN	16.473	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583210	+		30804	33431	21289	21329							0.05946140796800137
KGCDKCRAE	9	Unmodified	_KGCDKCRAE_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.7490234375	2	505.231319	1008.44808	-0.41012	-0.0002072	0.22987	0.00011614	-0.18024	-9.1064E-05	505.2313136084636	27.013	0.43789	27.013	26.741	27.179	0					17	10	2	0	0	0	0.024313	1	1437	1437		60.118	13.352	1	245370	+		30805	21999	21290	21330	35297	35297					-0.0558017737987484
KGCDKCRAE	9	Unmodified	_KGCDKCRAE_					0	0	0			REV__nc|ENSG00000112365|O43167-2|ZBTB24	REV__nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.7490234375	2	505.231319	1008.44808	-0.53797	-0.0002718	0.68095	0.00034404	0.14298	7.2237E-05	505.2314217437213	26.932	0.43066	26.919	26.704	27.134	-0.012983					16	10	2	0	0	0	0.024367	1	1421	1421		52.937	12.364	1	220100	+		30806	21999	21290	21330	35298	35298					-0.0558017737987484
KGCFYLGYTWL	11	Unmodified	_KGCFYLGYTWL_					0	0	0			REV__ENSG00000174937|ENST00000641993|OR5M3	REV__ENSG00000174937|ENST00000641993|OR5M3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7610168457031	3	450.889886	1349.64783	-0.43227	-0.00019491	-3.3817	-0.0015248	-3.8139	-0.0017197	451.22211294984453	39.546	0.11857	39.323	39.263	39.382	-0.22311					4	2	2	0	0	0	0.024723	1	3346	3346		28.577	0.93281	1	27050	+		30807	26905	21291	21331	35299	35299					-0.013007991604808922
KGCRYFRYI	9	Unmodified	_KGCRYFRYI_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A;nc|ENSG00000143498|Q15573-2|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.2123107910156	3	402.546454	1204.61753	1.9232	0.00077418	-4.0095	-0.001614	-2.0863	-0.00083982	402.5446730825394	35.879	0.89312	35.923	35.658	36.551	0.04406					37	24	2	0	0	0	0.024527	1	2816	2816		24.519	6.686	1	812530			30808	5655	21292	21332	35300	35300					0.0234088696499839
KGCTLCEFLK	10	Carbamidomethyl (C)	_KGC(Carbamidomethyl (C))TLCEFLK_	KGC(0.998)TLC(0.002)EFLK		KGC(26)TLC(-26)EFLK		0	1	0			REV__ENSG00000006194|ENST00000219069|ZNF263	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	600.7546997070312	2	599.801577	1197.5886	-0.73755	-0.00044238	-0.42134	-0.00025272	-1.1589	-0.0006951	599.8013292210076	58.92	0.57653	58.92	58.531	59.108	0					25	15	2	0	0	0	0.03519	1	6676	6676		88.177	13.134	2	150310	+		30809	19826	21293	21333	35301	35301	251				-0.002290184463163314
KGCTLCEFLK	10	Carbamidomethyl (C)	_KGC(Carbamidomethyl (C))TLCEFLK_	KGC(0.991)TLC(0.009)EFLK		KGC(21)TLC(-21)EFLK		0	1	0			REV__ENSG00000006194|ENST00000219069|ZNF263	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	600.7542114257812	2	599.801577	1197.5886	-0.50298	-0.00030169	-0.36476	-0.00021878	-0.86774	-0.00052047	599.8014338856683	58.81	0.73058	58.897	58.405	59.135	0.086544					31	19	2	0	0	0	0.03519	1	6581	6581		82.75	26.317	2	134780	+		30810	19826	21293	21333	35302	35302	251				-0.002290184463163314
KGCYQLRSI	9	Unmodified	_KGCYQLRSI_					0	0	0		ENST00000268607.9_1_16:87436731-87436806:+|nuORF	ENST00000268607.9_1_16:87436731-87436806:+|nuORF	ENST00000268607.9_1_16:87436731-87436806:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2862548828125	2	534.286951	1066.55935	-1.6628	-0.00088844	-0.91754	-0.00049023	-2.5804	-0.0013787	534.2871237946288	107.39	0.52689	107.25	106.81	107.33	-0.1346					42	20	3	0	0	0	0.91321	1	13332	13332		31.53	3.6476	1	143610			30811	11630	21294	21334	35303	35303					0.028732053197245477
KGDEDGGVVTL	11	Unmodified	_KGDEDGGVVTL_					0	0	0			REV__sp|P03198|DPOL_EBVB9DNApolymerasecatalyticsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF5PE=1SV=1	REV__sp|P03198|DPOL_EBVB9DNApolymerasecatalyticsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF5PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2760009765625	2	545.274761	1088.53497	-0.48422	-0.00026403	-0.41899	-0.00022847	-0.90322	-0.0004925	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.98542	1	9723	9723		40.058	0.80534	1	63206000	+		30812	37534	21295	21335	35304	35304					-0.005757763527981297
KGDELMGHE	9	Unmodified	_KGDELMGHE_					0	0	0			REV__chr20:1375603-1376776|517|23.74|0.0|21.18|-|2|FKBP1A,FKBP1A|3	REV__chr20:1375603-1376776|517|23.74|0.0|21.18|-|2|FKBP1A,FKBP1A|3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2288513183594	2	508.229299	1014.44404	-0.12919	-6.5658E-05	-2.6688	-0.0013564	-2.798	-0.001422	508.2278835586702	103.57	3.8021	103.58	101.29	105.09	0.0054245					154	97	2	0	0	0	0.56934	1	13236	13236		54.776	12.38	1	287740	+		30813	19419	21296	21336	35305	35305					-0.0625994360191271
KGDIFNEL	8	Unmodified	_KGDIFNEL_					0	0	0			REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.244873046875	2	468.245275	934.475997	0.40243	0.00018843	-1.4974	-0.00070113	-1.0949	-0.0005127	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.93437	1	12866	12866		47.657	5.2612	1	4364500	+		30814	22413	21297	21337	35306	35306					0.006137921435083626
KGDIFNEL	8	Unmodified	_KGDIFNEL_					0	0	0			REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24444580078125	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	0.96769	1	12864	12864		42.396	9.5837	1	4477100	+		30815	22413	21297	21337	35307	35307					0.006137921435083626
KGDQGDQNDL	10	Unmodified	_KGDQGDQNDL_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7898559570312	2	545.243992	1088.47343	-0.76718	-0.0004183	1.2662	0.0006904	0.49905	0.00027211	545.2447141790312	33.673	0.54521	33.73	33.386	33.931	0.056568					20	13	2	0	0	0	0.03519	1	2353	2353		33.922	12.975	1	111920			30816	7814	21298	21338	35308	35308					-0.06726708052087815
KGDYAGSVI	9	Unmodified	_KGDYAGSVI_					0	0	0			REV__nc|ENSG00000166167|Q9Y297-2|BTRC;REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	REV__nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.23699951171875	2	455.23745	908.460347	-0.81466	-0.00037086	0.55768	0.00025388	-0.25699	-0.00011699	455.2376035140638	43.521	1.4096	43.296	42.485	43.894	-0.22536					75	37	4	0	0	0	0.072054	2	3972	3972;3994		120.62	1.8779	1	5516700	+		30817	25983;20482	21299	21339	35309;35310	35309					0.002455056264693667
KGECLEPSIY	10	Unmodified	_KGECLEPSIY_					0	0	0			REV__ENSG00000160602|ENST00000268766|NEK8	REV__ENSG00000160602|ENST00000268766|NEK8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7745971679688	2	569.776082	1137.53761	-0.1028	-5.8573E-05	-2.6712	-0.001522	-2.774	-0.0015805	569.7745279378651	77.793	1.7871	77.632	77.311	79.098	-0.16196					81	41	5	0	0	0	0.82838	1	9253	9253		58.782	2.0609	1	8885900	+		30818	25329	21300	21340	35311	35311					-0.025656442194986084
KGEELCALGK	10	Unmodified	_KGEELCALGK_					0	0	0		chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2520751953125	2	524.278792	1046.54303	-1.3054	-0.00068438	-2.955	-0.0015493	-4.2604	-0.0022336	524.27697890175	53.822	0.2244	53.686	53.496	53.721	-0.13617					11	6	2	0	0	0	0.03519	1	5642	5642		60.118	26.197	1	354160			30819	434	21301	21341	35312	35312					0.021620793629836044
KGEELCALGK	10	Unmodified	_KGEELCALGK_					0	0	0		chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.278792	1046.54303	-0.69335	-0.00036351	0.039517	2.0718E-05	-0.65384	-0.00034279	524.2784564223385	53.958	0.59516	53.958	53.726	54.321	0	0.13455	0.00090484	NaN	60.118	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1567000			30820	434	21301	21341							0.021620793629836044
KGEELCALGK	10	Unmodified	_KGEELCALGK_					0	0	0		chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.278792	1046.54303	-0.23693	-0.00012422	-0.3867	-0.00020274	-0.62364	-0.00032696	524.278321404429	54.079	0.70308	53.931	53.602	54.305	-0.14723	0.10761	0.00045793	NaN	60.118	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599900			30821	434	21301	21341							0.021620793629836044
KGEELCALGK	10	Unmodified	_KGEELCALGK_					0	0	0		chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	chr8:143938692-143939109|143|13.83|0.23|5.9|-|0|PLEC,None|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.278792	1046.54303	-0.061261	-3.2118E-05	-0.50308	-0.00026376	-0.56434	-0.00029587	524.2783204744035	53.752	0.66318	53.847	53.629	54.292	0.095669	0.023522	0.0003359	NaN	60.118	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1533400			30822	434	21301	21341							0.021620793629836044
KGEIKIAVSI	10	Unmodified	_KGEIKIAVSI_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2979736328125	2	529.334424	1056.6543	-0.39033	-0.00020661	-0.12102	-6.4061E-05	-0.51135	-0.00027067	529.3343928578822	50.652	0.89368	50.502	50.225	51.118	-0.14916					47	25	4	0	0	0	0.03519	1	5339	5339		29.17	0	1	759940			30823	1121	21302	21342	35313	35313					0.12823462062578983
KGEPPAPKSPP	11	Unmodified	_KGEPPAPKSPP_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.78271484375	2	552.806031	1103.59751	0.10437	5.7697E-05	3.1817	0.0017589	3.2861	0.0018166	552.8076419025642	82.388	0.73608	82.207	81.856	82.592	-0.18079					38	16	3	0	0	0	0.024812	1	9970	9970		58.23	5.2932	1	682520			30824	9383	21303	21343	35314	35314					0.04985414506040797
KGEQNSPKP	9	Unmodified	_KGEQNSPKP_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2872619628906	2	492.759081	983.503609	-1.0496	-0.00051722	3.1158	0.0015353	2.0661	0.0010181	492.7598819626108	29.664	0.31994	29.743	29.646	29.966	0.078344					12	7	2	0	0	0	0.024457	1	1777	1777		21.96	0	1	69294	+		30825	24569	21304	21344	35315	35315					0.011196954037586693
KGESHEEL	8	Unmodified	_KGESHEEL_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2501525878906	2	464.722164	927.429775	-0.58424	-0.00027151	-2.3874	-0.0011095	-2.9716	-0.001381	464.7203607836933	48.094	0.33242	47.94	47.827	48.159	-0.15301					10	9	2	0	0	0	0.027866	1	4867	4867		45.952	19.259	1	361550	+		30826	28299	21305	21345	35316	35316					-0.0368427275857357
KGEVRRQKPI	10	Unmodified	_KGEVRRQKPI_					0	0	0			REV__nc|ENSG00000172493|P51825|AFF1	REV__nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8721923828125	2	605.872571	1209.73059	0.74452	0.00045108	-1.4277	-0.00086503	-0.68322	-0.00041395	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	1.0719	1	12265	12265		36.447	6.129	1	1081300	+		30827	26678	21306	21346	35317	35317					0.13411278682565353
KGFDVINQLH	10	Unmodified	_KGFDVINQLH_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.8182373046875	2	585.81693	1169.61931	0.20688	0.00012119	2.1569	0.0012635	2.3638	0.0013847	585.8181857204193	18.923	2.876	18.767	18.495	21.371	-0.15637					102	58	4	0	0	0	1.0393	1	383	383		40.778	1.5253	1	2198100	+		30828	19207	21307	21347	35318	35318					0.04128219254607757
KGFGGKFGV	9	Unmodified	_KGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.7540283203125	2	448.75307	895.491587	0.45793	0.0002055	-0.039691	-1.7811E-05	0.41824	0.00018769	448.7529523122462	39.575	0.84841	39.575	39.288	40.137	0					56	23	4	0	0	0	0.43973	1	3431	3431		63.306	4.5243	1	3274800			30829	18102	21308	21348	35319	35319					0.03966123451232306
KGFGGKFGV	9	Unmodified	_KGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.7535095214844	2	448.75307	895.491587	-0.75432	-0.0003385	1.231	0.00055243	0.47671	0.00021392	448.753526867779	39.528	1.0565	39.429	39.091	40.147	-0.098755					70	28	4	0	0	0	0.50848	1	3388	3388		58.782	12.83	1	3018000			30830	18102	21308	21348	35320	35320					0.03966123451232306
KGFGGKFGV	9	Unmodified	_KGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7531433105469	2	448.75307	895.491587	-0.75499	-0.00033881	1.2818	0.00057519	0.52676	0.00023639	448.7535357056341	39.746	1.0394	39.77	39.385	40.424	0.023727					64	28	4	0	0	0	0.62163	2	3380	3380;3391		51.335	6.9577	1	3078900			30831	18102	21308	21348	35321;35322	35321					0.03966123451232306
KGFGVRALPSG	11	Unmodified	_KGFGVRALPSG_					0	0	0			REV__ENST00000318560.5_1_9:133710462-133710642:+|nuORF	REV__ENST00000318560.5_1_9:133710462-133710642:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.8165893554688	2	544.81419	1087.61383	3.9916	0.0021747	-1.0616	-0.00057835	2.93	0.0015963	544.8136915403146	17.899	0.66283	17.96	17.786	18.449	0.06036					18	14	2	0	0	0	1.0557	1	201	201		23.523	3.5259	1	78060	+		30832	30310	21309	21349	35323	35323					0.07352540462784418
KGFMFHEI	8	Oxidation (M)	_KGFM(Oxidation (M))FHEI_		KGFM(1)FHEI		KGFM(97)FHEI	0	0	1			REV__MAGEB10|p.E243K|1|0.09|ENSG00000177689|chrX:27822033-27822033|G/A|missense_variant	REV__MAGEB10|p.E243K|1|0.09|ENSG00000177689|chrX:27822033-27822033|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.795166015625	2	512.74967	1023.48479	-1.0244	-0.00052526	3.6553	0.0018743	2.6309	0.001349	512.7512780830875	38.122	0.51674	38.04	37.777	38.294	-0.082512					22	14	2	0	0	0	0.027866	1	3159	3159		97.473	22.429	1	191310	+		30833	36347	21310	21350	35324	35324		962			-0.026015574916414153
KGFNTFVHS	9	Unmodified	_KGFNTFVHS_					0	0	0			REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7722778320312	2	518.764166	1035.51378	-0.33163	-0.00017204	-4.4877	-0.002328	-4.8193	-0.0025001	518.7617213548515	72.816	1.051	72.618	71.909	72.96	-0.19811					17	11	2	0	0	0	0.024292	1	8470	8470		32.812	0	1	149700	+		30834	29156	21311	21351	35325	35325					-0.002556968710223373
KGFQNEAMCTY	11	Unmodified	_KGFQNEAMCTY_					0	0	0			REV__ENSG00000113805|ENST00000263665|CNTN3	REV__ENSG00000113805|ENST00000263665|CNTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	431.5510559082031	3	431.186374	1290.53729	-0.20295	-8.7507E-05	-0.061113	-2.6351E-05	-0.26406	-0.00011386	431.18537540254056	36.532	0.466	36.532	36.298	36.764	0					22	12	3	0	0	0	0.024727	1	2891	2891		29.551	6.9892	1	95675	+		30835	22091	21312	21352	35326	35326					-0.09635387211005764
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENST00000468470.1_1_3:88144944-88145022:-|nuORF;ENSG00000094916|ENST00000209875|CBX5	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.18707275390625	3	412.18776	1233.54145	-0.56341	-0.00023223	0.41151	0.00016962	-0.15189	-6.2609E-05	412.18788148691146	36.024	1.5204	35.819	35.506	37.027	-0.20518					108	40	4	0	0	0	0.65849	3	2764	2764;2776;2801		70.399	18.231	1	10327000			30836	2011	21313	21353	35327;35328;35329	35327					-0.06597838401444278
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENST00000468470.1_1_3:88144944-88145022:-|nuORF;ENSG00000094916|ENST00000209875|CBX5	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	617.7777709960938	2	617.778002	1233.54145	-1.0842	-0.0006698	1.2744	0.00078729	0.19018	0.00011749	617.7787419583011	36.008	1.2198	35.803	35.346	36.566	-0.20518					76	32	4	0	0	0	0.0011673	3	2774	2774;2786;2798		182.39	84.289	1	4275800			30837	2011	21313	21353	35330;35331;35332	35330					-0.06597838401444278
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENST00000468470.1_1_3:88144944-88145022:-|nuORF;ENSG00000094916|ENST00000209875|CBX5	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.1875	3	412.18776	1233.54145	0.011818	4.8713E-06	-0.27397	-0.00011293	-0.26215	-0.00010805	412.1875590463457	35.911	0.97681	35.695	35.391	36.368	-0.21661					79	26	4	0	0	0	0.65849	4	2788	2749;2761;2773;2788		70.399	24.49	1	10981000			30838	2011	21313	21353	35333;35334;35335;35336	35336					-0.06597838401444278
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENST00000468470.1_1_3:88144944-88145022:-|nuORF;ENSG00000094916|ENST00000209875|CBX5	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	617.7786865234375	2	617.778002	1233.54145	-0.78169	-0.00048291	0.88364	0.00054589	0.10194	6.2979E-05	617.7784680203258	35.898	0.97681	35.682	35.391	36.368	-0.21661					68	26	4	0	0	0	1.9541E-05	3	2775	2752;2763;2775		205.59	107	1	4851200			30839	2011	21313	21353	35337;35338;35339	35339					-0.06597838401444278
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENST00000468470.1_1_3:88144944-88145022:-|nuORF;ENSG00000094916|ENST00000209875|CBX5	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.1874694824219	3	412.18776	1233.54145	0.32641	0.00013454	-0.40194	-0.00016568	-0.075535	-3.1135E-05	412.1875665923682	35.772	1.0475	35.574	35.327	36.375	-0.19829					84	28	4	0	0	0	0.80743	4	2717	2717;2729;2742;2754		60.167	15.528	1	9813400			30840	2011	21313	21353	35340;35341;35342;35343	35340					-0.06597838401444278
KGFSEEHNTW	10	Unmodified	_KGFSEEHNTW_					0	0	0		ENST00000468470.1_1_3:88144944-88145022:-|nuORF;ENSG00000094916|ENST00000209875|CBX5	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	ENST00000468470.1_1_3:88144944-88145022:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	617.7776489257812	2	617.778002	1233.54145	0.14258	8.8083E-05	-0.023027	-1.4225E-05	0.11955	7.3857E-05	617.7779235581291	35.797	1.1301	35.599	35.366	36.496	-0.19829					75	30	4	0	0	0	0.0055334	3	2723	2723;2735;2746		169.65	63.019	1	4362300			30841	2011	21313	21353	35344;35345;35346	35344					-0.06597838401444278
KGFTDADNTW	10	Unmodified	_KGFTDADNTW_					0	0	0		ENST00000325243.6_1_11:27828081-27828540:+|nuORF;ENSG00000122565|ENST00000396386|CBX3	ENST00000325243.6_1_11:27828081-27828540:+|nuORF	ENST00000325243.6_1_11:27828081-27828540:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.7593383789062	2	577.759278	1153.504	0.15973	9.2285E-05	0.013581	7.8464E-06	0.17331	0.00010013	577.7590422789856	49.98	0.71054	49.874	49.562	50.273	-0.10558					46	18	4	0	0	0	0.082298	1	5054	5054		140.11	19.491	1	2835100			30842	3932	21314	21354	35347	35347					-0.06660929667054916
KGFTDADNTW	10	Unmodified	_KGFTDADNTW_					0	0	0		ENST00000325243.6_1_11:27828081-27828540:+|nuORF;ENSG00000122565|ENST00000396386|CBX3	ENST00000325243.6_1_11:27828081-27828540:+|nuORF	ENST00000325243.6_1_11:27828081-27828540:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.7593383789062	2	577.759278	1153.504	-0.41373	-0.00023903	0.60754	0.00035101	0.19381	0.00011197	577.7593873260709	50.288	0.67464	50.009	49.729	50.404	-0.27977					48	17	4	0	0	0	0.0272	2	5094	5082;5094		157.34	59.872	1	2823200			30843	3932	21314	21354	35348;35349	35349					-0.06660929667054916
KGFTDADNTW	10	Unmodified	_KGFTDADNTW_					0	0	0		ENST00000325243.6_1_11:27828081-27828540:+|nuORF;ENSG00000122565|ENST00000396386|CBX3	ENST00000325243.6_1_11:27828081-27828540:+|nuORF	ENST00000325243.6_1_11:27828081-27828540:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.759765625	2	577.759278	1153.504	0.05674	3.2782E-05	0.3058	0.00017668	0.36254	0.00020946	577.759216273222	50.066	0.67307	49.886	49.644	50.317	-0.18071					47	17	4	0	0	0	0.32213	2	5070	5059;5070		106.68	21.522	1	2577700			30844	3932	21314	21354	35350;35351	35351					-0.06660929667054916
KGFVAELAK	9	Unmodified	_KGFVAELAK_					0	0	0			REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2459716796875	2	481.78711	961.559667	0.17235	8.3034E-05	-0.070432	-3.3933E-05	0.10191	4.9101E-05	481.78680464132015	60.237	0.52021	60.237	59.988	60.509	0					32	13	3	0	0	0	0.024374	1	6962	6962		49.442	0	1	1086800	+		30845	24546	21315	21355	35352	35352					0.07734948311224343
KGFVAELAK	9	Unmodified	_KGFVAELAK_					0	0	0			REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.78711	961.559667	-0.42889	-0.00020663	0.51544	0.00024833	0.086543	4.1695E-05	481.7871126949758	60.491	0.5302	60.278	60	60.531	-0.21339	0.010994	0.00012587	NaN	32.812	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1157000	+		30846	24546	21315	21355							0.07734948311224343
KGFVAELAK	9	Unmodified	_KGFVAELAK_					0	0	0			REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.78711	961.559667	-1.8441	-0.00088847	2.0777	0.001001	0.23361	0.00011255	481.7878851979329	60.169	0.452	60.248	60.049	60.501	0.078888	-0.018482	0.0016312	NaN	32.812	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025200	+		30847	24546	21315	21355							0.07734948311224343
KGFVAELAK	9	Unmodified	_KGFVAELAK_					0	0	0			REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	REV__ENST00000565907.1_1_X:135961433-135961586:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.78711	961.559667	0.11302	5.445E-05	0.066688	3.2129E-05	0.17971	8.658E-05	481.7869716680136	60.478	0.56984	60.272	60.011	60.581	-0.20599	0.0050976	-0.00030653	NaN	32.812	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665120	+		30848	24546	21315	21355							0.07734948311224343
KGGAIEVQ	8	Unmodified	_KGGAIEVQ_					0	0	0		ENST00000254616.10_1_11:6504052-6504379:+|nuORF	ENST00000254616.10_1_11:6504052-6504379:+|nuORF	ENST00000254616.10_1_11:6504052-6504379:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.5721740722656	2	401.226885	800.439217	-1.0532	-0.00042255	0.80602	0.0003234	-0.24714	-9.9158E-05	401.22720522993797	32.974	0.68297	32.808	32.679	33.362	-0.16565					22	16	2	0	0	0	0.027866	1	2339	2339		19.104	0	1	47776			30849	11381	21316	21356	35353	35353					0.031015403176070322
KGGAKPREIC	10	Unmodified	_KGGAKPREIC_					0	0	0			REV__ENST00000227507.2_1_11:69468939-69469170:+|nuORF	REV__ENST00000227507.2_1_11:69468939-69469170:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2988891601562	2	529.792401	1057.57025	-1.1247	-0.00059584	-1.3584	-0.00071969	-2.4831	-0.0013155	529.7916895157254	38.45	0.43783	38.27	38.102	38.539	-0.17929					21	11	3	0	0	0	0.03519	1	3215	3215		44.377	3.599	1	288880	+		30850	29384	21317	21357	35354	35354					0.04376607694007362
KGGCWAFIN	9	Unmodified	_KGGCWAFIN_					0	0	0			REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF	REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2955017089844	2	498.242012	994.469472	0.37484	0.00018676	3.5223	0.001755	3.8972	0.0019417	498.2434886935382	40.497	0.52958	40.497	40.414	40.944	0					21	14	2	0	0	0	0.024294	1	3638	3638		37.159	8.0096	1	500450	+		30851	20101	21318	21358	35355	35355					-0.027984242888464905
KGGCWAFIN	9	Unmodified	_KGGCWAFIN_					0	0	0			REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF	REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.242012	994.469472	0.7801	0.00038868	2.8069	0.0013985	3.587	0.0017872	498.2430737070709	40.638	0.39015	40.515	40.371	40.762	-0.12318	-0.053094	-0.00052532	NaN	37.159	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382680	+		30852	20101	21318	21358							-0.027984242888464905
KGGEKDREF	9	Unmodified	_KGGEKDREF_					0	0	0		ENST00000589716.5_1_17:40907159-40911837:-|nuORF	ENST00000589716.5_1_17:40907159-40911837:-|nuORF	ENST00000589716.5_1_17:40907159-40911837:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.78564453125	2	533.269813	1064.52507	-0.52068	-0.00027766	1.7874	0.00095318	1.2668	0.00067552	533.7727994881193	46.943	0.7832	46.79	46.342	47.125	-0.153					33	20	3	0	0	0	0.024436	1	4655	4655		16.473	0	1	165570			30853	17314	21319	21359	35356	35356					-0.004609195675357114
KGGEKGTF	8	Unmodified	_KGGEKGTF_					0	0	0		ENST00000264276.10_1_2:202566016-202566163:-|nuORF	ENST00000264276.10_1_2:202566016-202566163:-|nuORF	ENST00000264276.10_1_2:202566016-202566163:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	412.2303771972656	2	412.21906	822.423567	-0.35295	-0.00014549	-2.8028	-0.0011554	-3.1558	-0.0013009	412.2183958726676	27.442	0.43958	27.523	27.282	27.722	0.081291					17	11	2	0	0	0	0.027866	1	1440	1440		21.96	1.9631	1	77243			30854	11559	21320	21360	35357	35357					0.005252538005720453
KGGEKLQFD	9	Unmodified	_KGGEKLQFD_					0	0	0		ENSG00000198382|ENST00000356136|UVRAG;nc|ENSG00000198382|Q9P2Y5-2|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8441467285156	2	511.269281	1020.52401	-0.14171	-7.2451E-05	4.328	0.0022128	4.1863	0.0021403	511.2714195182584	76.986	0.66496	77	76.696	77.361	0.013504					23	15	2	0	0	0	0.024374	1	9410	9410		32.812	4.9302	1	427740			30855	10130	21321	21361	35358	35358					0.014568660635632114
KGGFFVKN	8	Unmodified	_KGGFFVKN_					0	0	0		nc|ENSG00000111846|Q8N0V5-3|GCNT2	nc|ENSG00000111846|Q8N0V5-3|GCNT2	nc|ENSG00000111846|Q8N0V5-3|GCNT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.7547912597656	2	448.75307	895.491587	0.45793	0.0002055	-0.039691	-1.7811E-05	0.41824	0.00018769	448.7529523122462	39.575	0.84841	39.575	39.288	40.137	0					56	23	4	0	0	0	0.89627	1	3419	3419		51.335	5.3632	1	3274800			30856	18173	21322	21362	35359	35359					0.03966123451232306
KGGFFVKN	8	Unmodified	_KGGFFVKN_					0	0	0		nc|ENSG00000111846|Q8N0V5-3|GCNT2	nc|ENSG00000111846|Q8N0V5-3|GCNT2	nc|ENSG00000111846|Q8N0V5-3|GCNT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.7544250488281	2	448.75307	895.491587	-0.75432	-0.0003385	1.231	0.00055243	0.47671	0.00021392	448.753526867779	39.528	1.0565	39.429	39.091	40.147	-0.098755					70	28	4	0	0	0	0.94517	1	3400	3400		45.952	1.8352	1	3018000			30857	18173	21322	21362	35360	35360					0.03966123451232306
KGGFLKMA	8	Unmodified	_KGGFLKMA_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2462158203125	2	426.244024	850.473494	0.4124	0.00017578	4.4485	0.0018962	4.8609	0.0020719	426.2457939199312	86.761	2.0846	86.782	86.157	88.241	0.021263					140	49	6	0	0	0	1.0239	1	10800	10800		33.516	5.2613	1	10449000	+		30858	27693	21323	21363	35361	35361					0.042276652048713004
KGGFLKMA	8	Unmodified	_KGGFLKMA_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2459716796875	2	426.244024	850.473494	0.40347	0.00017198	4.3204	0.0018416	4.7239	0.0020135	426.24579574865595	86.946	2.1354	86.809	86.18	88.315	-0.13734					133	50	5	0	0	0	1.0574	1	10522	10522		19.36	1.0356	1	11262000	+		30859	27693	21323	21363	35362	35362					0.042276652048713004
KGGGLLAIPN	10	Unmodified	_KGGGLLAIPN_					0	0	0			REV__GTF2H4|p.F114_I120del|1|0.11|ENSG00000213780|chr6:30910025-30910045|CATTTTCCGCCAGAACCTCCG/-|inframe_deletion	REV__GTF2H4|p.F114_I120del|1|0.11|ENSG00000213780|chr6:30910025-30910045|CATTTTCCGCCAGAACCTCCG/-|inframe_deletion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.8013610839844	2	470.284734	938.554916	0.21299	0.00010017	-0.31978	-0.00015039	-0.10679	-5.022E-05	470.2844166086485	51.253	0.60892	50.976	50.665	51.274	-0.27643					25	15	2	0	0	0	0.03519	1	5262	5262		40.778	3.6191	1	481780	+		30860	36086	21324	21364	35363	35363					0.0831806416845211
KGGGNLLGII	10	Unmodified	_KGGGNLLGII_					0	0	0		nc|ENSG00000166391|Q3SYC2-2|MOGAT2;nc|ENSG00000166391|Q3SYC2-3|MOGAT2;ENSG00000166391|ENST00000198801|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.8022155761719	2	471.292559	940.570566	0.47021	0.00022161	-0.73307	-0.00034549	-0.26286	-0.00012388	471.2921133195389	51.021	0.2239	50.841	50.76	50.984	-0.18071					8	5	2	0	0	0	0.03519	1	5231	5231		44.117	19.914	1	364400			30861	7549	21325	21365	35364	35364					0.09790350685523208
KGGHARSKNW	10	Unmodified	_KGGHARSKNW_					0	0	0		nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140	nc|ENSG00000079263|Q13342-3|SP140	nc|ENSG00000079263|Q13342-3|SP140	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.33203125	2	570.804688	1139.59482	-0.75278	-0.00042969	0.53848	0.00030737	-0.2143	-0.00012232	570.8045190825046	46.616	0.39834	46.667	46.474	46.873	0.051395					13	10	2	0	0	0	0.03519	1	4595	4595		37.812	0	1	73885			30862	1656	21326	21366	35365	35365					0.03061003891752989
KGGHSRTLQ	9	Unmodified	_KGGHSRTLQ_					0	0	0		ENST00000466133.1_1_3:159819443-159820214:+|nuORF;ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENST00000466133.1_1_3:159819443-159820214:+|nuORF	ENST00000466133.1_1_3:159819443-159820214:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.7567443847656	2	492.27269	982.530826	-0.12306	-6.058E-05	-0.056926	-2.8023E-05	-0.17999	-8.8603E-05	492.2724534926773	23.807	0.51782	23.627	23.395	23.913	-0.17989					29	11	3	0	0	0	0.024319	1	985	985		56.721	21.103	1	438580			30863	7513	21327	21367	35366	35366					0.038862237347984774
KGGITQPNI	9	Unmodified	_KGGITQPNI_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2792663574219	2	464.266542	926.51853	-0.32829	-0.00015241	0.67757	0.00031457	0.34928	0.00016216	464.26669149844133	52.372	0.54872	52.372	52.085	52.634	0					24	13	2	0	0	0	0.024457	1	5567	5567		45.952	19.259	1	1358100			30864	751	21328	21368	35367	35367					0.052331872717559236
KGGKKLQRG	9	Unmodified	_KGGKKLQRG_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.290771484375	2	486.309075	970.603597	-0.81803	-0.00039782	-0.43803	-0.00021302	-1.2561	-0.00061084	486.3085564965868	25.131	0.20237	25.131	25.009	25.211	0					7	4	2	0	0	0	0.024436	1	1167	1167		23.042	3.6825	1	32479	+		30865	26419	21329	21369	35368	35368					0.11711977528227635
KGGKTLELI	9	Unmodified	_KGGKTLELI_					0	0	0		ENST00000456936.3_1_5:114951687-114951792:-|nuORF	ENST00000456936.3_1_5:114951687-114951792:-|nuORF	ENST00000456936.3_1_5:114951687-114951792:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.8002014160156	2	479.800217	957.585882	-0.58113	-0.00027883	0.50815	0.00024381	-0.072981	-3.5016E-05	479.80030679524384	22.205	0.61396	22.02	21.667	22.281	-0.18539					26	12	3	0	0	0	0.53979	1	767	767		56.721	1.2168	1	460370			30866	14604	21330	21370	35369	35369					0.1053921748269886
KGGKTQVH	8	Unmodified	_KGGKTQVH_					0	0	0			REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.23876953125	2	427.745776	853.477	0.20426	8.7371E-05	-0.71913	-0.0003076	-0.51487	-0.00022023	427.7455079045064	32.489	0.414	32.552	32.352	32.766	0.062885					14	10	2	0	0	0	0.027866	1	2198	2198		52.299	0	1	125880	+		30867	28846	21331	21371	35370	35370					0.04440051303083692
KGGNATGAVLP	11	Unmodified	_KGGNATGAVLP_					0	0	0			REV__CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	REV__CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7720031738281	2	492.777274	983.539994	-0.62056	-0.0003058	-0.15157	-7.4693E-05	-0.77213	-0.00038049	492.77704215278084	33.288	1.0018	33.294	33.08	34.082	0.0066223					36	26	2	0	0	0	0.024498	1	2350	2350		54.776	0	1	909680	+		30868	19308	21332	21372	35371	35371					0.04756572300470907
KGGPHHVI	8	Unmodified	_KGGPHHVI_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-4|BANK1	REV__nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.58245849609375	2	422.743037	843.471521	-1.0185	-0.00043057	0.84679	0.00035798	-0.17173	-7.2599E-05	422.74446096506824	44.033	0.66983	43.888	43.461	44.131	-0.14471					27	18	2	0	0	0	0.027866	1	4187	4187		8.2313	0	1	444550	+		30869	24882	21333	21373	35372	35372					0.043523725112777356
KGGPVFVF	8	Unmodified	_KGGPVFVF_					0	0	0			REV__ENST00000317568.9_1_11:65179968-65180214:+|nuORF	REV__ENST00000317568.9_1_11:65179968-65180214:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.7747497558594	2	425.744714	849.474875	-0.22472	-9.5674E-05	0.49409	0.00021035	0.26937	0.00011468	425.7447137341165	42.219	0.17213	41.987	41.87	42.042	-0.23186					6	4	2	0	0	0	0.027866	1	3771	3771		28.254	0	1	190530	+		30870	30297	21334	21374	35373	35373					0.04411622565282869
KGGQAEAVV	9	Unmodified	_KGGQAEAVV_					0	0	0			REV__ENST00000372386.6_1_9:133355254-133376405:+|nuORF	REV__ENST00000372386.6_1_9:133355254-133376405:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.8706970214844	2	429.737617	857.460681	0.54724	0.00023517	3.5631	0.0015312	4.1103	0.0017664	429.73906978106874	36.798	0.35712	36.605	36.455	36.812	-0.193					13	8	2	0	0	0	0.02435	1	2939	2939		26.693	11.051	1	93256	+		30871	31200	21335	21375	35374	35374					0.026249253463333844
KGGQEKQG	8	Unmodified	_KGGQEKQG_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2301940917969	2	416.219591	830.42463	0.31801	0.00013236	-3.9345	-0.0016376	-3.6165	-0.0015052	416.21955370675363	25.748	0.25822	25.828	25.664	25.922	0.08009					7	5	2	0	0	0	0.027866	1	1200	1200		58.782	0	1	27685			30872	4651	21336	21376	35375	35375					0.002634681694871688
KGGRKGGGGGG	11	Unmodified	_KGGRKGGGGGG_					0	0	0			REV__ENSG00000141385|ENST00000269143|AFG3L2	REV__ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	444.244384765625	2	444.243932	886.473312	-0.38856	-0.00017261	3.1151	0.0013839	2.7266	0.0012113	444.24570454476	102.79	1.6394	102.79	102.21	103.85	0					89	39	5	0	0	0	0.95882	1	13155	13155		45.972	13.16	1	7543800	+		30873	24078	21337	21377	35376	35376					0.025533815292646977
KGGRKSRH	8	Unmodified	_KGGRKSRH_					0	0	0			REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2506408691406	2	463.275567	924.53658	-0.53436	-0.00024755	4.2273	0.0019584	3.693	0.0017109	463.2772101790138	48.169	0.54555	48.169	47.971	48.516	0					23	15	2	0	0	0	0.027866	1	4931	4931		37.159	0	1	229720	+		30874	20644	21338	21378	35377	35377					0.0712936703713467
KGGRLPCPE	9	Unmodified	_KGGRLPCPE_					0	0	0		nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	nc|ENSG00000182511|P07332-2|FES	nc|ENSG00000182511|P07332-2|FES	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2952575683594	2	478.752744	955.490935	-0.20894	-0.00010003	-3.332	-0.0015952	-3.5409	-0.0016952	478.7510030338053	24.066	0.56081	23.886	23.563	24.124	-0.17989					33	12	4	0	0	0	0.024263	1	1021	1021		42.396	0	1	476620			30875	9142	21339	21379	35378	35378					0.011409607398718435
KGGRVRQT	8	Unmodified	_KGGRVRQT_					0	0	0			REV__ENSG00000143061|ENST00000369486|IGSF3	REV__ENSG00000143061|ENST00000369486|IGSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.28662109375	2	451.26995	900.525347	0.23007	0.00010382	3.6589	0.0016511	3.8889	0.001755	451.27145476666	52.779	0.66229	52.871	52.24	52.902	0.091938					27	16	2	0	0	0	0.027866	1	5552	5552		6.7355	0	1	307020	+		30876	24194	21340	21380	35379	35379					0.07110544942986508
KGGSCLLK	8	Unmodified	_KGGSCLLK_					0	0	0			REV__ENST00000225174.7_1_10:81114292-81114370:+|nuORF	REV__ENST00000225174.7_1_10:81114292-81114370:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5362548828125	2	403.233656	804.452759	-0.74513	-0.00030046	0.44493	0.00017941	-0.3002	-0.00012105	403.2337866545769	35.136	0.93858	34.95	34.282	35.22	-0.18675					28	23	2	0	0	0	0.027866	1	2585	2585		7.6903	0	1	95874	+		30877	29370	21341	21381	35380	35380					0.04271074825214782
KGGSEQCGAH	10	Unmodified	_KGGSEQCGAH_					0	0	0			REV__chrX:97120275-97141665|192|21.42|0.12|7.45|+|2|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|16	REV__chrX:97120275-97141665|192|21.42|0.12|7.45|+|2|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2562255859375	2	487.21144	972.408328	-0.42223	-0.00020572	-3.9153	-0.0019076	-4.3375	-0.0021133	487.2093905255218	52.869	0.44217	52.965	52.753	53.195	0.095669					20	11	3	0	0	0	0.03519	1	5646	5646		34.173	8.7224	1	163020	+		30878	19487	21342	21382	35381	35381					-0.07897981058931691
KGGSHRIS	8	Unmodified	_KGGSHRIS_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.7439270019531	2	421.235576	840.456599	-0.37256	-0.00015694	0.15925	6.7084E-05	-0.2133	-8.9851E-05	421.23539331811753	27.338	0.77652	27.325	26.869	27.645	-0.012983					30	20	2	0	0	0	0.027866	1	1516	1516		44.117	17.321	1	522220			30879	8174	21343	21383	35382	35382					0.02998880643292523
KGGSLPLSTL	10	Unmodified	_KGGSLPLSTL_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2799987792969	2	486.78985	971.565146	-0.40879	-0.00019899	0.32496	0.00015818	-0.083832	-4.0809E-05	486.7896093916716	50.403	0.53581	50.484	50.243	50.779	0.080994					20	15	2	0	0	0	0.03519	1	5234	5234		51.193	0	1	916570	+		30880	27255	21344	21384	35383	35383					0.07822627103041668
KGGSQSEGIL	10	Unmodified	_KGGSQSEGIL_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.27996826171875	2	488.258914	974.503274	-0.45211	-0.00022074	0.48589	0.00023724	0.033782	1.6494E-05	488.25889375245	23.051	0.67436	22.99	22.753	23.428	-0.060862					32	15	3	0	0	0	0.03519	1	911	911		40.778	12.896	1	435210	+		30881	23960	21345	21385	35384	35384					0.01500275683918062
KGGTESYLSN	10	Unmodified	_KGGTESYLSN_					0	0	0			REV__ENSG00000139218|ENST00000369367|SCAF11	REV__ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7694091796875	2	528.253828	1054.4931	-0.41046	-0.00021683	-1.7581	-0.00092874	-2.1686	-0.0011456	528.2528255080109	53.222	0.75654	53.318	52.98	53.736	0.095669					34	20	2	0	0	0	0.03519	1	5681	5681		82.75	0	1	1918400	+		30882	23928	21346	21386	35385	35385					-0.03196332041329697
KGGTKLEKT	9	Unmodified	_KGGTKLEKT_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7431335449219	2	481.287474	960.560395	-0.54231	-0.00026101	0.25595	0.00012318	-0.28636	-0.00013782	481.28759684221205	45.763	0.64421	45.611	45.309	45.954	-0.15156					46	18	3	0	0	0	0.024487	1	4407	4407		0.90815	0	1	1743900	+		30883	37044	21347	21387	35386	35386					0.07853742960276122
KGGVAIRFQ	9	Unmodified	_KGGVAIRFQ_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;ENST00000467066.1_1_1:38351308-38353961:-|nuORF	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2742919921875	2	488.290351	974.566149	-0.28055	-0.00013699	3.9297	0.0019189	3.6492	0.0017819	488.29225640403655	53.015	0.30293	52.868	52.72	53.023	-0.14723					12	7	3	0	0	0	0.024436	1	5665	5665		38.806	3.1879	1	183520			30884	10297	21348	21388	35387	35387					0.0778488626260696
KGGVKEALSE	10	Unmodified	_KGGVKEALSE_					0	0	0		nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	nc|ENSG00000101782|O14730-2|RIOK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.818603515625	2	509.282389	1016.55022	0.081188	4.1347E-05	-4.2895	-0.0021845	-4.2083	-0.0021432	509.27976229839004	74.794	0.35986	74.794	74.676	75.036	0					13	8	2	0	0	0	0.03519	1	9175	9175		35.152	3.1972	1	59364			30885	2349	21349	21389	35388	35388					0.042611352350377274
KGGVSPGREP	10	Unmodified	_KGGVSPGREP_					0	0	0		ENST00000335007.9_1_12:111180498-111180681:-|nuORF	ENST00000335007.9_1_12:111180498-111180681:-|nuORF	ENST00000335007.9_1_12:111180498-111180681:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2670593261719	2	492.267073	982.519593	1.3774	0.00067803	-0.9994	-0.00049197	0.37796	0.00018606	492.26625660966	37.134	1.1452	37.134	36.724	37.869	0					75	30	4	0	0	0	0.57594	1	3000	3000		79.713	0.26157	1	12836000			30886	12388	21350	21390	35389	35389					0.02763401640675056
KGGVSPGREP	10	Unmodified	_KGGVSPGREP_					0	0	0		ENST00000335007.9_1_12:111180498-111180681:-|nuORF	ENST00000335007.9_1_12:111180498-111180681:-|nuORF	ENST00000335007.9_1_12:111180498-111180681:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.26666259765625	2	492.267073	982.519593	0.21205	0.00010438	-0.064867	-3.1932E-05	0.14718	7.2451E-05	492.2666524696594	37.019	0.98215	36.955	36.47	37.452	-0.063385					77	25	5	0	0	0	0.56936	1	2953	2953		80.455	11.668	1	12205000			30887	12388	21350	21390	35390	35390					0.02763401640675056
KGGWKAGP	8	Unmodified	_KGGWKAGP_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.2072448730469	2	400.724313	799.434072	0.83431	0.00033433	-0.094561	-3.7893E-05	0.73975	0.00029643	400.72410931984007	24.015	0.57875	23.8	23.51	24.089	-0.2151					27	12	3	0	0	0	0.027866	1	1014	1014		24.203	3.7209	1	302520			30888	2562	21351	21391	35391	35391					0.02633281245653052
KGGYKKPEP	9	Unmodified	_KGGYKKPEP_					0	0	0			REV__ENST00000481894.1_1_1:115165698-115167864:-|nuORF	REV__ENST00000481894.1_1_1:115165698-115167864:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3026428222656	2	502.282192	1002.54983	-1.0367	-0.00052073	3.5882	0.0018023	2.5515	0.0012816	502.2838249827634	25.785	0.46597	25.614	25.324	25.79	-0.17151					21	10	3	0	0	0	0.024523	1	1209	1209		15.642	0	1	291160	+		30889	26986	21352	21392	35392	35392					0.04865760305847289
KGHHVATLF	9	Unmodified	_KGHHVATLF_					0	0	0			REV__nc|ENSG00000105499|Q9UP65-3|PLA2G4C	REV__nc|ENSG00000105499|Q9UP65-3|PLA2G4C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.76715087890625	2	505.282526	1008.5505	0.018191	9.1916E-06	-2.9319	-0.0014815	-2.9137	-0.0014723	505.2810046140688	63.488	0.48013	63.26	62.81	63.291	-0.22773					16	11	2	0	0	0	0.024	1	7171	7171		55.504	5.4797	1	165250	+		30890	36543	21353	21393	35393	35393					0.04656599745555923
KGHLPRPTP	9	Unmodified	_KGHLPRPTP_					0	0	0			REV__ENSG00000132510|ENST00000448097|KDM6B	REV__ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7974548339844	2	501.795801	1001.57705	-0.62262	-0.00031243	3.3425	0.0016772	2.7199	0.0013648	501.7973681639872	38.545	0.88351	38.462	38.116	38.999	-0.082516					60	23	4	0	0	0	0.91321	1	3225	3225		31.53	3.2755	1	5114600	+		30891	23288	21354	21394	35394	35394					0.07632288636898465
KGIAHHSIF	9	Unmodified	_KGIAHHSIF_					0	0	0			REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7669677734375	2	505.282526	1008.5505	0.13622	6.8829E-05	-3.2961	-0.0016654	-3.1598	-0.0015966	505.28078948972126	63.439	0.3535	63.181	62.96	63.313	-0.25824					13	8	2	0	0	0	0.02435	1	7162	7162		51.335	1.3109	1	193630	+		30892	23047	21355	21395	35395	35395					0.04656599745555923
KGIGPFGPP	9	Unmodified	_KGIGPFGPP_					0	0	0			REV__ENSG00000144810|ENST00000652472|COL8A1	REV__ENSG00000144810|ENST00000652472|COL8A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.249267578125	2	435.247621	868.480688	-0.8996	-0.00039155	0.44383	0.00019318	-0.45577	-0.00019837	435.2476545565228	29.215	0.83368	29.215	28.778	29.611	0					47	20	3	0	0	0	0.64155	1	1771	1771		50.025	0	1	2760300	+		30893	24363	21356	21396	35396	35396					0.04118721076940801
KGIKSRLD	8	Unmodified	_KGIKSRLD_					0	0	0			REV__POTEB3|p.M24I|1|0.18|ENSG00000278522|chr15:21439940-21439940|C/A|missense_variant	REV__POTEB3|p.M24I|1|0.18|ENSG00000278522|chr15:21439940-21439940|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2292785644531	2	458.782359	915.550165	-0.5275	-0.00024201	0.65449	0.00030027	0.12699	5.8259E-05	458.78249475508204	28.17	0.98039	28.17	27.924	28.904	0					45	23	3	0	0	0	0.027866	1	1722	1722		56.721	26.217	1	380990	+		30894	37393	21357	21397	35397	35397					0.08901180025713984
KGIKSRLD	8	Unmodified	_KGIKSRLD_					0	0	0			REV__POTEB3|p.M24I|1|0.18|ENSG00000278522|chr15:21439940-21439940|C/A|missense_variant	REV__POTEB3|p.M24I|1|0.18|ENSG00000278522|chr15:21439940-21439940|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	458.782359	915.550165	-0.10498	-4.8161E-05	0.33165	0.00015215	0.22667	0.00010399	458.7824549607836	27.92	0.48908	28.001	27.759	28.249	0.081291	-0.084383	-0.00011058	NaN	56.721	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391160	+		30895	37393	21357	21397							0.08901180025713984
KGINAGQLPAP	11	Unmodified	_KGINAGQLPAP_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7738647460938	2	533.306198	1064.59784	-0.099287	-5.2951E-05	-3.2672	-0.0017424	-3.3665	-0.0017954	533.8054333050499	47.802	0.80714	47.615	47.279	48.086	-0.18684					39	21	3	0	0	0	0.024732	1	4665	4665		40.778	11.629	1	652790			30896	10881	21358	21398	35398	35398					0.06812834225888764
KGINLQGPL	9	Unmodified	_KGINLQGPL_					0	0	0		ELOVL3|p.F61I|1|0.17|ENSG00000119915|chr10:102227705-102227705|T/A|missense_variant	ELOVL3|p.F61I|1|0.17|ENSG00000119915|chr10:102227705-102227705|T/A|missense_variant	ELOVL3|p.F61I|1|0.17|ENSG00000119915|chr10:102227705-102227705|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.8017883300781	2	470.284734	938.554916	0.49828	0.00023433	-0.68767	-0.0003234	-0.18939	-8.907E-05	470.2842907594801	51.174	0.57405	50.993	50.647	51.222	-0.18071					25	14	2	0	0	0	0.024405	1	5244	5244		44.117	6.9577	1	373930			30897	701	21359	21399	35399	35399					0.08318064168463479
KGIQNKDI	8	Unmodified	_KGIQNKDI_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2293701171875	2	458.266542	914.51853	-0.37788	-0.00017317	-1.2111	-0.00055503	-1.589	-0.00072819	458.2661273370862	28.55	0.6326	28.546	28.374	29.006	-0.0042019					18	14	2	0	0	0	0.027866	1	1717	1717		66.429	0	1	57538			30898	2300	21360	21400	35400	35400					0.05785187271760606
KGIVLEKV	8	Unmodified	_KGIVLEKV_					0	0	0		ENSG00000186468|ENST00000296674|RPS23;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.29217529296875	2	443.292028	884.569503	1.2385	0.00054902	-1.4195	-0.00062926	-0.18101	-8.0238E-05	443.2913950271453	37.021	1.4543	37.021	36.648	38.102	0					104	39	5	0	0	0	0.061055	3	2975	2975;2987;2999		171.38	27.498	1	18914000			30899	9551	21361	21401	35401;35402;35403	35401					0.12260136316604076
KGIVLEKV	8	Unmodified	_KGIVLEKV_					0	0	0		ENSG00000186468|ENST00000296674|RPS23;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2922668457031	2	443.292028	884.569503	0.2804	0.0001243	-0.44662	-0.00019798	-0.16622	-7.3684E-05	443.2918371506299	36.873	1.3264	36.809	36.47	37.796	-0.063389					100	35	5	0	0	0	0.11183	5	2935	2926;2935;2947;2959;2971		157.33	28.468	1	17693000			30900	9551	21361	21401	35404;35405;35406;35407;35408	35405					0.12260136316604076
KGIVLEKV	8	Unmodified	_KGIVLEKV_					0	0	0		ENSG00000186468|ENST00000296674|RPS23;RPS23|p.K108Ifs*10|1|0.12|ENSG00000186468|chr5:82276218-82276219|-/ACTTTTTTTA|frameshift_variant	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2921447753906	2	443.292028	884.569503	-0.057057	-2.5293E-05	-0.046665	-2.0686E-05	-0.10372	-4.5979E-05	443.2920098687617	36.983	1.8292	37.015	36.573	38.402	0.03228					117	49	5	0	0	0	0.094045	5	2914	2902;2914;2926;2938;2951		162.25	35.799	1	16782000			30901	9551	21361	21401	35409;35410;35411;35412;35413	35410					0.12260136316604076
KGIVMVAEP	9	Unmodified	_KGIVMVAEP_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.3287658691406	2	472.267696	942.520839	0.51893	0.00024507	2.1876	0.0010332	2.7066	0.0012782	472.268750028976	22.74	0.60038	22.538	22.285	22.886	-0.20199					15	12	2	0	0	0	0.024405	1	801	801		27.882	3.6795	1	19554	+		30902	20737	21362	21402	35414	35414					0.04727899685212833
KGIVVGIKL	9	Unmodified	_KGIVVGIKL_					0	0	0		ENSG00000136872|ENST00000647789|ALDOB;ALDOB|p.E100K|1|0.03|ENSG00000136872|chr9:101429781-101429781|C/T|missense_variant	ENSG00000136872|ENST00000647789|ALDOB	ENSG00000136872|ENST00000647789|ALDOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.25054931640625	2	463.823495	925.632438	-0.54779	-0.00025408	-0.12406	-5.7542E-05	-0.67185	-0.00031162	463.82390993035744	47.959	0.59943	47.959	47.779	48.378	0					33	17	3	0	0	0	0.024487	1	4905	4905		31.955	5.1588	1	553800			30903	5060	21363	21403	35415	35415					0.16664702104651496
KGIYLSPISSI	11	Unmodified	_KGIYLSPISSI_					0	0	0		ENSG00000137817|ENST00000569795|PARP6	ENSG00000137817|ENST00000569795|PARP6	ENSG00000137817|ENST00000569795|PARP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3435668945312	2	589.344989	1176.67542	-1.5173	-0.0008942	-1.914	-0.001128	-3.4313	-0.0020222	589.3436932414581	103.63	0.73327	103.63	103.38	104.12	0					46	17	4	0	0	0	1.0075	1	13308	13308		35.152	4.8343	1	562530			30904	5159	21364	21404	35416	35416					0.09415427371436635
KGKADRNL	8	Unmodified	_KGKADRNL_					0	0	0			REV__ENST00000519253.5_2_8:17867188-17867218:+|nuORF	REV__ENST00000519253.5_2_8:17867188-17867218:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2680358886719	2	451.264333	900.514114	-0.58808	-0.00026538	0.27637	0.00012472	-0.3117	-0.00014066	451.26440910325346	33.013	0.7205	32.847	32.516	33.236	-0.16565					50	17	4	0	0	0	0.80469	1	2292	2292		58.782	3.2778	1	5149700	+		30905	34254	21365	21405	35417	35417					0.05987722848840349
KGKAESLI	8	Unmodified	_KGKAESLI_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.2590026855469	2	423.258185	844.501818	2.1241	0.00089904	-0.19385	-8.2049E-05	1.9302	0.00081699	423.257924125115	23.65	0.62923	23.459	23.209	23.838	-0.19117					36	14	3	0	0	0	0.99042	1	937	937		38.806	1.647	1	837880			30906	4379	21366	21406	35418	35418					0.07334686385797795
KGKALLGDIK	10	Unmodified	_KGKALLGDIK_					0	0	0		ENST00000343388.11_1_17:60599583-60613540:+|nuORF;ENST00000479267.2_3_7:128218036-128231910:+|nuORF	ENST00000343388.11_1_17:60599583-60613540:+|nuORF	ENST00000343388.11_1_17:60599583-60613540:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.306396484375	2	521.834591	1041.65463	-0.89514	-0.00046712	0.39456	0.0002059	-0.50058	-0.00026122	521.834657237272	52.96	0.5211	52.96	52.711	53.232	0					28	13	3	0	0	0	0.03519	1	5725	5725		49.536	0	1	201980			30907	12530	21367	21407	35419	35419					0.13546881782394848
KGKEKLSAPE	10	Unmodified	_KGKEKLSAPE_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2977905273438	2	543.811313	1085.60807	0.47509	0.00025836	0.30961	0.00016837	0.7847	0.00042673	543.8109096664846	63.197	1.3286	63.251	62.474	63.803	0.054104					69	34	3	0	0	0	0.03519	1	7197	7197		27.047	1.5971	1	7847500	+		30908	27801	21368	21408	35420	35420					0.06869397160448898
KGKESKLVTN	10	Unmodified	_KGKESKLVTN_					0	0	0		CENPJ|p.G884Efs*6|1|0.28|ENSG00000151849|chr13:24905387-24905387|C/-|frameshift_variant;nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ	CENPJ|p.G884Efs*6|1|0.28|ENSG00000151849|chr13:24905387-24905387|C/-|frameshift_variant	CENPJ|p.G884Efs*6|1|0.28|ENSG00000151849|chr13:24905387-24905387|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.2817993164062	2	552.324588	1102.63462	-0.17453	-9.6396E-05	3.7346	0.0020627	3.5601	0.0019663	552.3263413921164	77.832	0.7312	77.832	77.591	78.323	0					35	17	3	0	0	0	0.03519	1	9689	9689		56.721	26.403	1	392580			30909	251	21369	21409	35421	35421					0.08741086051804814
KGKFLLQVF	9	Unmodified	_KGKFLLQVF_					0	0	0		ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2901000976562	2	540.334227	1078.6539	-1.3883	-0.00075015	-0.087268	-4.7154E-05	-1.4756	-0.0007973	540.3339538567146	53.368	0.14306	53.22	53.096	53.239	-0.14723					5	3	2	0	0	0	0.024541	1	5726	5726		24.203	0	1	115930			30910	9564	21370	21410	35422	35422					0.11772087133385867
KGKIENEL	8	Unmodified	_KGKIENEL_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.75341796875	2	465.766374	929.518196	0.19964	9.2985E-05	0.46607	0.00021708	0.66571	0.00031007	465.76635483934115	20.69	0.73193	20.522	20.147	20.879	-0.16774					35	14	3	0	0	0	0.027866	1	617	617		44.117	0	1	207490	+		30911	20605	21371	21411	35423	35423					0.05061767551910634
KGKKALSQNL	10	Unmodified	_KGKKALSQNL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.7298583984375	2	543.835123	1085.65569	-2.0672	-0.0011242	-0.0093715	-5.0965E-06	-2.0766	-0.0011293	544.336186265363	51.946	0.46839	51.677	51.4	51.869	-0.26904					28	12	3	0	0	0	0.03519	1	5353	5353		32.812	21.947	1	191450			30912	8590	21372	21412	35424	35424					0.11629096151295926
KGKKATNCKT	10	Unmodified	_KGKKATNCKT_					0	0	0		ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant;ENSG00000168916|ENST00000513986|ZNF608;nc|ENSG00000168916|Q9ULD9-2|ZNF608	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.805419921875	2	539.805508	1077.59646	-0.65765	-0.000355	0.89868	0.00048511	0.24103	0.00013011	539.8058318868327	41.459	1.2073	41.482	41.182	42.39	0.023006					97	34	5	0	0	0	0.75651	1	3679	3679		63.534	0.55543	1	5215900			30913	38201	21373	21413	35425	35425					0.06076876865495251
KGKKGKLV	8	Unmodified	_KGKKGKLV_					0	0	0			REV__ENST00000529541.1_1_11:13631944-13632271:-|nuORF	REV__ENST00000529541.1_1_11:13631944-13632271:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.2661437988281	2	429.300188	856.585822	0.28606	0.00012281	-0.32026	-0.00013749	-0.034195	-1.468E-05	429.29984123350613	24.492	0.37378	24.277	24.089	24.463	-0.2151					12	8	2	0	0	0	0.027866	1	1051	1051		8.2313	0.54101	1	74988	+		30914	34516	21374	21414	35426	35426					0.15179262273375116
KGKKGQPGGG	10	Unmodified	_KGKKGQPGGG_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2641906738281	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	1.0665	1	10055	10055		37.159	0	1	2903100	+		30915	20312	21375	21415	35427	35427					0.05435722848869773
KGKKGQPGGG	10	Unmodified	_KGKKGQPGGG_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26422119140625	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0665	1	9996	9996		37.159	0	1	2920900	+		30916	20312	21375	21415	35428	35428					0.05435722848869773
KGKKKGKV	8	Unmodified	_KGKKKGKV_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENST00000560801.5_2_15:31320559-31354823:-|nuORF	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.8813171386719	2	436.805637	871.596721	-0.21228	-9.2725E-05	-2.8946	-0.0012644	-3.1069	-0.0013571	436.80449784233076	40.057	0.77733	39.832	39.3	40.078	-0.225					32	19	2	0	0	0	0.027866	1	3417	3417		3.9852	0	1	578330			30917	4760	21376	21416	35429	35429					0.15578664647659934
KGKKKKRL	8	Unmodified	_KGKKKKRL_					0	0	0			REV__ENSG00000157119|ENST00000287777|KLHL40	REV__ENSG00000157119|ENST00000287777|KLHL40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3057556152344	2	493.353286	984.692019	-0.49992	-0.00024664	-0.14152	-6.9819E-05	-0.64144	-0.00031646	493.353008684846	69.258	0.21777	69.274	69.209	69.426	0.015129					9	5	3	0	0	0	0.027866	1	8279	8279		8.2313	4.2461	1	145120	+		30918	25115	21377	21417	35430	35430					0.1990601783868442
KGKKLKLI	8	Unmodified	_KGKKLKLI_					0	0	0			REV__ENST00000577812.5_1_17:80442656-80446030:+|nuORF	REV__ENST00000577812.5_1_17:80442656-80446030:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2789611816406	2	464.339313	926.664072	-0.33821	-0.00015705	2.6802	0.0012445	2.342	0.0010875	464.34058351363456	51.507	0.41264	51.594	51.302	51.715	0.087006					16	11	3	0	0	0	0.027866	1	5410	5410		35.201	21.425	1	289020	+		30919	24105	21378	21418	35431	35431					0.19780694858604875
KGKLKEELL	9	Unmodified	_KGKLKEELL_					0	0	0			REV__nc|ENSG00000072571|O75330-4|HMMR	REV__nc|ENSG00000072571|O75330-4|HMMR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2977905273438	2	529.334424	1056.6543	-0.021405	-1.1331E-05	-0.14806	-7.8372E-05	-0.16946	-8.9703E-05	529.3342826322123	50.3	1.2169	50.381	50.117	51.333	0.080994					57	34	4	0	0	0	0.024523	1	5228	5228		29.15	0	1	686370	+		30920	20475	21379	21419	35432	35432					0.12823462062556246
KGKLKEELL	9	Unmodified	_KGKLKEELL_					0	0	0			REV__nc|ENSG00000072571|O75330-4|HMMR	REV__nc|ENSG00000072571|O75330-4|HMMR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.334424	1056.6543	-1.0158	-0.00053769	0.4676	0.00024751	-0.54819	-0.00029018	529.3347266465881	50.479	0.96797	50.479	50.21	51.178	0	0.024742	0.00053827	NaN	51.335	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617380	+		30921	20475	21379	21419							0.12823462062556246
KGKLYRWVRVK	11	Unmodified	_KGKLYRWVRVK_					0	0	0			REV__nc|ENSG00000188157|O00468-4|AGRN	REV__nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2846984863281	3	478.301501	1431.88267	0.37959	0.00018156	2.5202	0.0012054	2.8998	0.001387	478.30245227141546	75.903	1.1651	75.915	75.61	76.775	0.011635					48	29	2	0	0	0	0.02486	1	9295	9295		12.957	3.3113	1	75799	+		30922	37039	21380	21420	35433	35433					0.18400679430078526
KGKNLPRI	8	Unmodified	_KGKNLPRI_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.25018310546875	2	463.300719	924.586885	-0.5388	-0.00024963	0.78618	0.00036424	0.24738	0.00011461	463.30095464304327	48.122	0.95173	48.122	47.843	48.795	0					56	27	3	0	0	0	0.027866	1	4955	4955		25.45	13.243	1	3103000			30923	9130	21381	21421	35434	35434					0.12157476642266829
KGKNLPRI	8	Unmodified	_KGKNLPRI_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.300719	924.586885	-0.38008	-0.00017609	0.14467	6.7026E-05	-0.23541	-0.00010906	463.3006169421107	47.98	0.44617	47.882	47.63	48.076	-0.097553	-0.16903	-0.00024281	NaN	25.45	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606000			30924	9130	21381	21421							0.12157476642266829
KGKNLPRI	8	Unmodified	_KGKNLPRI_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.300719	924.586885	-0.88056	-0.00040797	0.39981	0.00018523	-0.48075	-0.00022273	463.3007761626657	48.329	0.44681	48.053	47.775	48.222	-0.27598	0.0016545	-6.3931E-06	NaN	25.45	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635590			30925	9130	21381	21421							0.12157476642266829
KGKNLPRI	8	Unmodified	_KGKNLPRI_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.300719	924.586885	0.18245	8.4528E-05	-0.67714	-0.00031372	-0.49469	-0.00022919	463.30024541294193	48.064	0.48971	47.877	47.596	48.086	-0.18684	-0.17452	-0.0010043	NaN	25.45	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489120			30926	9130	21381	21421							0.12157476642266829
KGKPPLKALI	10	Unmodified	_KGKPPLKALI_					0	0	0			REV__nc|ENSG00000143365|P51449-2|RORC	REV__nc|ENSG00000143365|P51449-2|RORC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7899169921875	2	532.863152	1063.71175	-0.50606	-0.00026966	0.4165	0.00022194	-0.089557	-4.7722E-05	532.8629167375374	64.244	0.25564	63.985	63.831	64.086	-0.25903					8	6	2	0	0	0	0.03519	1	7506	7506		15.642	0	1	151120	+		30927	24232	21382	21422	35435	35435					0.18244349058795706
KGKPTRPQ	8	Unmodified	_KGKPTRPQ_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.8631896972656	2	456.274701	910.534849	-0.52977	-0.00024172	3.4768	0.0015864	2.947	0.0013446	456.2761194596374	38.304	0.29006	38.086	37.894	38.184	-0.21849					12	8	2	0	0	0	0.027866	1	3144	3144		9.7057	0	1	66380	+		30928	19339	21383	21423	35436	35436					0.07600313228510913
KGKRKKVK	8	Unmodified	_KGKRKKVK_					0	0	0			REV__ENSG00000143674|ENST00000366624|MAP3K21	REV__ENSG00000143674|ENST00000366624|MAP3K21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7607727050781	2	486.345461	970.676368	-0.18454	-8.975E-05	-2.6165	-0.0012725	-2.801	-0.0013623	486.3439618738239	25.52	0.33471	25.349	25.247	25.581	-0.17078					10	7	2	0	0	0	0.027866	1	1204	1204		7.6903	0	1	52574	+		30929	24274	21384	21424	35437	35437					0.1898573132165211
KGKRRRSSD	9	Unmodified	_KGKRRRSSD_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.317138671875	2	545.31542	1088.61629	-0.95669	-0.0005217	3.3914	0.0018494	2.4347	0.0013277	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.72875	1	11029	11029		44.117	4.0586	1	15621000			30930	9519	21385	21425	35438	35438					0.07552388920453268
KGKVLLGEEE	10	Unmodified	_KGKVLLGEEE_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7806396484375	2	551.311146	1100.60774	-0.63119	-0.00034798	0.38892	0.00021442	-0.24227	-0.00013357	551.3113987498568	45.507	0.42995	45.296	45.089	45.519	-0.21109					20	12	3	0	0	0	0.03519	1	4321	4321		37.812	0	1	298980			30931	9990	21386	21426	35439	35439					0.061459774406330325
KGLASKVESH	10	Unmodified	_KGLASKVESH_					0	0	0			REV__ENST00000496254.5_1_3:52724982-52725084:+|nuORF	REV__ENST00000496254.5_1_3:52724982-52725084:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.318603515625	2	528.29583	1054.57711	-0.67903	-0.00035873	1.0483	0.00055382	0.36928	0.00019509	528.2963945675777	39.278	0.62112	39.278	39.006	39.627	0					42	17	3	0	0	0	0.03519	1	3358	3358		23.523	0	1	1083200	+		30932	33820	21387	21427	35440	35440					0.052002438462295686
KGLELFSL	8	Unmodified	_KGLELFSL_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.30279541015625	2	453.768386	905.522219	0.043965	1.995E-05	0.17038	7.7312E-05	0.21434	9.7262E-05	453.7683389867338	61.233	0.74504	61.02	60.604	61.349	-0.21339					33	19	3	0	0	0	0.027866	1	6979	6979		29.15	0	1	456810			30933	3284	21388	21428	35441	35441					0.06567857045604342
KGLFNANG	8	Unmodified	_KGLFNANG_					0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.71875	2	410.719227	819.423902	1.0893	0.0004474	-2.1056	-0.00086482	-1.0163	-0.00041743	410.7182657977767	95.455	1.742	95.459	94.878	96.62	0.0041122					98	40	4	0	0	0	1.0574	1	12053	12053		25.45	0	1	2791300	+		30934	25698	21389	21429	35442	35442					0.006966735204287033
KGLHTKLF	8	Unmodified	_KGLHTKLF_					0	0	0			REV__ENST00000295101.2_1_2:155554859-155555222:+|nuORF	REV__ENST00000295101.2_1_2:155554859-155555222:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.24932861328125	2	472.28982	942.565087	-1.6082	-0.00075953	-1.9611	-0.00092621	-3.5693	-0.0016857	472.28829548702964	21.356	0.44276	21.143	20.872	21.315	-0.2128					11	8	2	0	0	0	0.027866	1	637	637		24.203	0	1	44392	+		30935	29973	21390	21430	35443	35443					0.09150671893689832
KGLKQLHEN	9	Unmodified	_KGLKQLHEN_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;ENST00000425406.5_1_7:86817376-86824453:+|nuORF;ENST00000547146.6_1_7:86813892-86824453:+|nuORF;ENST00000447863.5_1_7:86811523-86824453:+|nuORF	nc|ENSG00000135164|Q9Y222-5|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8057250976562	2	533.803823	1065.59309	-1.0778	-0.00057535	3.8646	0.0020629	2.7867	0.0014876	533.8059632694876	44.898	1.1267	44.898	44.519	45.646	0					122	32	5	0	0	0	0.42604	1	4321	4321		64.207	0	1	45576000			30936	4867	21391	21431	35444	35444					0.06291950083118536
KGLKSLTL	8	Unmodified	_KGLKSLTL_					0	0	0			REV__ENST00000295226.1_1_2:223168979-223169048:+|nuORF	REV__ENST00000295226.1_1_2:223168979-223169048:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.265869140625	2	430.284203	858.553853	-0.55699	-0.00023967	3.0575	0.0013156	2.5005	0.0010759	430.2854979549411	48.423	0.20523	48.423	48.277	48.482	0					6	5	2	0	0	0	0.027866	1	4933	4933		113.41	1.7633	1	62068	+		30937	29978	21392	21432	35445	35445					0.11891849799553711
KGLLGLLEE	9	Unmodified	_KGLLGLLEE_					0	0	0		ENSG00000189129|ENST00000372263|PLAC9	ENSG00000189129|ENST00000372263|PLAC9	ENSG00000189129|ENST00000372263|PLAC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2904357910156	2	486.292225	970.569897	-1.2589	-0.00061219	-2.7851	-0.0013544	-4.044	-0.0019665	486.2909805729049	27.4	2.2661	27.481	27.064	29.33	0.081293					128	57	5	0	0	0	0.55828	1	1474	1474		55.504	6.0627	1	43649000			30938	9792	21393	21433	35446	35446					0.08343511245811897
KGLLIAVSVS	10	Unmodified	_KGLLIAVSVS_					0	0	0		nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENSG00000160753|ENST00000368352|RUSC1;nc|ENSG00000160753|Q9BVN2-2|RUSC1;nc|ENSG00000160753|Q9BVN2-3|RUSC1;ENST00000467820.5_1_1:155292812-155294999:+|nuORF	nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENST00000467820.5_1_1:155292812-155294999:+|nuORF	nc|ENSG00000160753|Q9BVN2-4|RUSC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.8161315917969	2	493.815867	985.617182	-0.25624	-0.00012653	0.84197	0.00041578	0.58574	0.00028925	493.81615577351283	66.825	1.3758	66.849	66.559	67.935	0.023911					71	33	3	0	0	0	1.1082	1	7863	7863		14.865	0.20078	1	1978100			30939	6837;14853	21394	21434	35447	35447					0.12379790516808953
KGLLKALK	8	Unmodified	_KGLLKALK_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.755126953125	2	435.810388	869.606223	1.0862	0.00047337	-0.86971	-0.00037903	0.21647	9.4342E-05	435.80986950028586	22.709	0.73727	22.507	22.24	22.977	-0.20199					33	15	4	0	0	0	0.027866	1	858	858		25.45	6.0902	1	433320			30940	10520	21395	21435	35448	35448					0.16620432933154916
KGLLLEDN	8	Unmodified	_KGLLLEDN_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3-2|EML5;nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000165521|Q05BV3|EML5;nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26910400390625	2	451.2531	900.491647	-0.31364	-0.00014153	0.073283	3.3069E-05	-0.24036	-0.00010846	451.2536938976694	38.62	0.31448	38.527	38.243	38.558	-0.093632					13	7	3	0	0	0	0.027866	1	3231	3231		26.693	0	1	532240			30941	7425;10559	21396	21436	35449	35449					0.037420786605594
KGLMAFLGR	9	Unmodified	_KGLMAFLGR_					0	0	0		ENST00000485832.1_1_7:128446807-128447827:+|nuORF	ENST00000485832.1_1_7:128446807-128447827:+|nuORF	ENST00000485832.1_1_7:128446807-128447827:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7743835449219	2	496.78913	991.563706	-0.21616	-0.00010739	0.2452	0.00012181	0.02904	1.4427E-05	496.789661767574	77.777	0.41283	77.793	77.618	78.031	0.015907					10	9	2	0	0	0	0.024405	1	9515	9515		35.618	3.6634	1	29907			30942	15333	21397	21437	35450	35450					0.06758714533293642
KGLMKSLEA	9	Unmodified	_KGLMKSLEA_					0	0	0			REV__ENSG00000171056|ENST00000304501|SOX7	REV__ENSG00000171056|ENST00000304501|SOX7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7769775390625	2	488.778428	975.542302	-0.24308	-0.00011881	-2.8209	-0.0013788	-3.0639	-0.0014976	488.77687860213143	61.501	0.72087	61.572	60.985	61.706	0.071125					40	18	3	0	0	0	0.31037	1	7048	7048		74.255	7.8258	1	3511600	+		30943	26538	21398	21438	35451	35451					0.05355284713925812
KGLQDFDI	8	Unmodified	_KGLQDFDI_					0	0	0		SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7667541503906	2	468.245275	934.475997	0.55975	0.0002621	2.8133	0.0013173	3.373	0.0015794	468.2464992323821	37.11	1.3152	37.143	36.539	37.854	0.032269					56	34	4	0	0	0	0.027866	1	2893	2893		30.504	14.862	1	300800			30944	37867	21399	21439	35452	35452					0.006137921435083626
KGLQDFDI	8	Unmodified	_KGLQDFDI_					0	0	0		SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.245275	934.475997	0.9306	0.00043575	3.0027	0.001406	3.9333	0.0018417	468.246444674476	37.155	1.0483	37.155	36.887	37.936	0	0.13783	-0.00030221	NaN	30.504	49	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260430			30945	37867	21399	21439							0.006137921435083626
KGLQDFDI	8	Unmodified	_KGLQDFDI_					0	0	0		SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.245275	934.475997	0.33731	0.00015794	3.4872	0.0016329	3.8245	0.0017908	468.24688572557255	37.035	0.98023	36.972	36.709	37.69	-0.063389	-0.045359	0.0001515	NaN	30.504	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227180			30946	37867	21399	21439							0.006137921435083626
KGLQDFDI	8	Unmodified	_KGLQDFDI_					0	0	0		SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.245275	934.475997	-0.6919	-0.00032398	4.1403	0.0019387	3.4484	0.0016147	468.24713518245585	37.123	0.58458	36.904	36.647	37.231	-0.2195	-0.11396	0.00076319	NaN	30.504	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134210			30947	37867	21399	21439							0.006137921435083626
KGLQDFDI	8	Unmodified	_KGLQDFDI_					0	0	0		SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	SEMA4A|p.T66I|1|0.19|ENSG00000196189|chr1:156156471-156156471|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.245275	934.475997	-0.07075	-3.3128E-05	3.6504	0.0017093	3.5797	0.0016762	468.24701655500314	37.123	0.46717	36.914	36.765	37.232	-0.2092	-0.10372	0.00030438	NaN	30.504	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123990			30948	37867	21399	21439							0.006137921435083626
KGLRWLHS	8	Unmodified	_KGLRWLHS_					0	0	0			REV__ENST00000498128.1_1_1:46108161-46120330:-|nuORF	REV__ENST00000498128.1_1_1:46108161-46120330:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7884521484375	2	498.790518	995.566484	-0.42546	-0.00021222	-4.3258	-0.0021577	-4.7513	-0.0023699	498.7883940741003	21.611	1.2857	21.521	21.158	22.444	-0.090092					64	26	4	0	0	0	0.71833	1	686	686		65.803	10.299	1	2493100	+		30949	33871	21400	21440	35453	35453					0.06852305982454254
KGLVLADSFD	10	Unmodified	_KGLVLADSFD_					0	0	0			REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF	REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7738647460938	2	532.784764	1063.55498	-0.57317	-0.00030538	-0.12121	-6.458E-05	-0.69438	-0.00036996	532.784555324672	46.681	1.0692	46.487	46.415	47.484	-0.19387					36	29	2	0	0	0	0.03519	1	4665	4665		49.442	17.912	1	178220	+		30950	32168	21401	21441	35454	35454					0.025740193777892273
KGLYHANL	8	Unmodified	_KGLYHANL_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2292785644531	2	458.255977	914.497401	-0.7912	-0.00036257	-1.7636	-0.00080819	-2.5548	-0.0011708	458.254390476099	28.962	0.56446	28.962	28.696	29.26	0					33	13	4	0	0	0	0.027866	1	1722	1722		45.952	1.8352	1	719440	+		30951	28806	21402	21442	35455	35455					0.0367322196287887
KGLYQDLED	9	Unmodified	_KGLYQDLED_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1;nc|ENSG00000153531|Q8NDY3-2|ADPRHL1;nc|ENSG00000153531|Q8NDY3|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7637329101562	2	540.764029	1079.5135	-1.3957	-0.00075474	2.0851	0.0011276	0.68942	0.00037282	540.7649982622062	49.627	1.5688	49.701	49.169	50.737	0.074196					106	44	4	0	0	0	0.6504	1	5102	5102		49.442	1.7842	1	5911500			30952	6348	21403	21443	35456	35456					-0.023071613815318415
KGLYWVAPL	9	Unmodified	_KGLYWVAPL_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2579345703125	2	523.805303	1045.59605	-0.53967	-0.00028268	-1.2718	-0.00066617	-1.8115	-0.00094885	523.8043892427842	22.26	1.4646	22.185	21.319	22.784	-0.075294					30	18	2	0	0	0	0.024386	1	813	813		42.474	11.971	1	60845			30953	2433	21404	21444	35457	35457					0.07507825207926544
KGLYWVAPL	9	Unmodified	_KGLYWVAPL_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.805303	1045.59605	-1.0632	-0.0005569	-0.42093	-0.00022048	-1.4841	-0.00077739	523.8048744426032	22.179	0.84603	22.179	21.819	22.665	0	-0.034745	-7.9287E-05	NaN	42.474	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46390			30954	2433	21404	21444							0.07507825207926544
KGMHAPNVTI	10	Unmodified	_KGMHAPNVTI_					0	0	0			REV__ENST00000512977.1_1_5:137043266-137071515:-|nuORF	REV__ENST00000512977.1_1_5:137043266-137071515:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.80517578125	2	534.286951	1066.55935	-1.0903	-0.00058256	0.3875	0.00020703	-0.70285	-0.00037552	534.2860894602704	44.888	0.28138	44.888	44.725	45.006	0					10	7	2	0	0	0	0.03519	1	4299	4299		54.776	0	1	144580	+		30955	24453	21405	21445	35458	35458					0.028732053197245477
KGMIVSYRL	9	Unmodified	_KGMIVSYRL_					0	0	0			REV__nc|ENSG00000196266|Q5JRS4|OR10J3	REV__nc|ENSG00000196266|Q5JRS4|OR10J3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.80517578125	2	533.807519	1065.60049	-1.0778	-0.00057535	-3.0608	-0.0016339	-4.1386	-0.0022092	533.8059632694876	44.898	1.1267	44.898	44.519	45.646	0					122	32	5	0	0	0	0.33245	2	4299	4299;4309		71.296	7.9894	1	45576000	+		30956	37051	21406	21446	35459;35460	35459					0.07030966359184276
KGMIVSYRL	9	Unmodified	_KGMIVSYRL_					0	0	0			REV__nc|ENSG00000196266|Q5JRS4|OR10J3	REV__nc|ENSG00000196266|Q5JRS4|OR10J3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8051147460938	2	533.807519	1065.60049	-1.1538	-0.00061591	-2.936	-0.0015673	-4.0898	-0.0021832	533.8060234938253	45.067	1.1268	44.919	44.523	45.649	-0.1488					123	32	5	0	0	0	0.4752	3	4315	4306;4315;4378		60.972	6.1956	1	51243000	+		30957	37051	21406	21446	35461;35462;35463	35462					0.07030966359184276
KGMIVSYRL	9	Unmodified	_KGMIVSYRL_					0	0	0			REV__nc|ENSG00000196266|Q5JRS4|OR10J3	REV__nc|ENSG00000196266|Q5JRS4|OR10J3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8042602539062	2	533.807519	1065.60049	-0.62298	-0.00033255	-3.5326	-0.0018857	-4.1556	-0.0022183	533.80569556097	44.942	0.99356	44.986	44.654	45.647	0.043877					116	28	5	0	0	0	0.39228	3	4334	4258;4270;4334		66.429	7.6205	1	50938000	+		30958	37051	21406	21446	35464;35465;35466	35466					0.07030966359184276
KGMRGLQGTA	10	Unmodified	_KGMRGLQGTA_					0	0	0		COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7749938964844	2	509.776751	1017.53895	-0.38364	-0.00019557	-1.8069	-0.00092109	-2.1905	-0.0011167	509.77541864252674	45.729	0.7181	45.729	45.445	46.163	0					62	20	4	0	0	0	0.54901	1	4481	4481		82.75	3.0379	1	2562300			30959	469	21407	21447	35467	35467					0.030880346599246877
KGMRGLQGTA	10	Unmodified	_KGMRGLQGTA_					0	0	0		COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7746887207031	2	509.776751	1017.53895	-0.80941	-0.00041262	-2.0588	-0.0010495	-2.8682	-0.0014622	509.7755746641004	45.84	0.68693	45.688	45.412	46.099	-0.15157					34	19	2	0	0	0	0.69662	1	4474	4474		67.494	3.2864	1	2791600			30960	469	21407	21447	35468	35468					0.030880346599246877
KGMRGLQGTA	10	Unmodified	_KGMRGLQGTA_					0	0	0		COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	COL20A1|p.E1140Q|1|0.32|ENSG00000101203|chr20:63326111-63326111|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.77557373046875	2	509.776751	1017.53895	-0.34648	-0.00017663	-1.9749	-0.0010068	-2.3214	-0.0011834	509.7754095801066	45.75	0.78903	45.793	45.478	46.267	0.043877					65	22	4	0	0	0	0.45418	2	4409	4409;4424		93.143	20.203	1	2747600			30961	469	21407	21447	35469;35470	35469					0.030880346599246877
KGNELSARG	9	Unmodified	_KGNELSARG_					0	0	0			REV__ENST00000330688.8_1_3:25469886-25470027:+|nuORF	REV__ENST00000330688.8_1_3:25469886-25470027:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2688293457031	2	466.251423	930.488293	0.052832	2.4633E-05	3.2029	0.0014934	3.2557	0.001518	466.2534059529108	41.658	1.0015	41.658	41.085	42.087	0					66	28	4	0	0	0	0.024209	1	3820	3820		39.253	0	1	1358400	+		30962	30463	21408	21448	35471	35471					0.02026828606574327
KGNSLCRPLY	10	Unmodified	_KGNSLCRPLY_					0	0	0		ENST00000360635.7_1_2:9560135-9562651:-|nuORF;ENST00000494563.5_1_2:9560135-9563162:-|nuORF	ENST00000360635.7_1_2:9560135-9562651:-|nuORF	ENST00000360635.7_1_2:9560135-9562651:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8036499023438	2	575.805508	1149.59646	-0.47416	-0.00027302	-4.0641	-0.0023401	-4.5383	-0.0026132	575.8030562095723	70.671	0.89393	70.683	70.347	71.24	0.012421					60	21	4	0	0	0	0.98754	1	8464	8464		47.657	6.2307	1	1910700			30963	12772	21409	21449	35472	35472					0.02764876865489896
KGNTKHNI	8	Unmodified	_KGNTKHNI_					0	0	0		ENSG00000169783|ENST00000355300|LINGO1;nc|ENSG00000169783|Q96FE5-2|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	ENSG00000169783|ENST00000355300|LINGO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	456.256508	910.498464	-0.090899	-4.1473E-05	0.51678	0.00023578	0.42588	0.00019431	456.2568055607442	24.619	0.62151	24.619	24.253	24.874	0					14	13	2	0	0	0	0.027866	1	1089	1089		27.882	0	1	21535			30964	7976	21410	21450	35473	35473					0.039634363317986754
KGNVVTKHSP	10	Unmodified	_KGNVVTKHSP_					0	0	0			REV__nc|ENSG00000090054|O15269-2|SPTLC1	REV__nc|ENSG00000090054|O15269-2|SPTLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8056640625	2	533.803823	1065.59309	-1.0778	-0.00057535	3.8646	0.0020629	2.7867	0.0014876	533.8059632694876	44.898	1.1267	44.898	44.519	45.646	0					122	32	5	0	0	0	0.83673	1	4345	4345		58.23	4.8785	1	45576000	+		30965	20868	21411	21451	35474	35474					0.06291950083118536
KGPGREQRE	9	Unmodified	_KGPGREQRE_					0	0	0			REV__ENST00000444537.5_1_2:165636273-165698319:-|nuORF	REV__ENST00000444537.5_1_2:165636273-165698319:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7793579101562	2	528.780879	1055.5472	-0.49081	-0.00025953	-3.2912	-0.0017403	-3.782	-0.0019998	528.7790140501899	17.144	0.35291	16.936	16.762	17.115	-0.20777					10	6	2	0	0	0	0.89441	1	150	150		32.812	3.6629	1	133080	+		30966	32595	21412	21452	35475	35475					0.0216530490090463
KGPKASPVAGI	11	Unmodified	_KGPKASPVAGI_					0	0	0			REV__ENST00000557508.5_1_14:58727715-58730477:+|nuORF	REV__ENST00000557508.5_1_14:58727715-58730477:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.810546875	2	512.811116	1023.60768	-1.9741	-0.0010124	0.99249	0.00050896	-0.98164	-0.0005034	512.8113230860174	38.213	1.148	38.24	37.884	39.032	0.027275					109	31	6	0	0	0	0.51994	1	3139	3139		75.043	6.5586	1	7030100	+		30967	35071	21413	21453	35476	35476					0.09682022231265819
KGPKPILII	9	Unmodified	_KGPKPILII_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|63|2|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|63|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79266357421875	2	489.839146	977.663738	-0.099247	-4.8615E-05	0.19323	9.4649E-05	0.093978	4.6034E-05	489.8392609188013	61.001	0.37138	61.001	60.845	61.216	0					13	9	2	0	0	0	0.024541	1	7031	7031		18.324	11.131	1	118530	+		30968	36296	21414	21454	35477	35477					0.17401275138752226
KGPKPILII	9	Unmodified	_KGPKPILII_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|63|2|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|63|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7921447753906	2	489.839146	977.663738	-0.15406	-7.5466E-05	-0.058578	-2.8694E-05	-0.21264	-0.00010416	489.838936801408	61.309	0.40093	61.082	60.86	61.261	-0.22663					15	10	2	0	0	0	0.024541	1	7032	7032		3.41	0	1	120090	+		30969	36296	21414	21454	35478	35478					0.17401275138752226
KGPLAIEHIL	10	Unmodified	_KGPLAIEHIL_					0	0	0			REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.275390625	2	545.834591	1089.65463	-0.35224	-0.00019227	-0.52189	-0.00028487	-0.87413	-0.00047713	545.8337699047713	77.371	0.50732	77.371	77.125	77.632	0					21	11	3	0	0	0	0.03519	1	9578	9578		84.916	0	1	171490	+		30970	33140	21415	21455	35479	35479					0.11338881782398857
KGPLAIEHIL	10	Unmodified	_KGPLAIEHIL_					0	0	0			REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2752075195312	2	545.834591	1089.65463	-0.45052	-0.00024591	-0.99859	-0.00054506	-1.4491	-0.00079097	545.8342047922821	77.538	0.66501	77.327	77.122	77.787	-0.21087					18	15	2	0	0	0	0.03519	1	9597	9597		82.241	0	1	256430	+		30971	33140	21415	21455	35480	35480					0.11338881782398857
KGPMPKVIV	9	Unmodified	_KGPMPKVIV_					0	0	0			REV__ENSG00000154305|ENST00000344922|MIA3	REV__ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.76702880859375	2	484.801706	967.588859	-0.76524	-0.00037099	3.7548	0.0018203	2.9896	0.0014494	484.8034214798409	34.819	0.75994	34.797	34.474	35.233	-0.021763					46	19	3	0	0	0	0.024262	1	2617	2617		38.806	0	1	2951200	+		30972	24953	21416	21456	35481	35481					0.10376769335857716
KGPNKYSEG	9	Unmodified	_KGPNKYSEG_					0	0	0			REV__nc|ENSG00000166086|Q9BX67-2|JAM3	REV__nc|ENSG00000166086|Q9BX67-2|JAM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.8120422363281	2	490.245806	978.47706	0.17492	8.5755E-05	-0.63706	-0.00031232	-0.46214	-0.00022656	490.2452992549037	25.507	0.37677	25.335	25.159	25.536	-0.17151					12	8	2	0	0	0	0.024447	1	1215	1215		32.812	4.9302	1	88232	+		30973	25966	21417	21457	35482	35482					-0.013039934875791914
KGPSPPGAKRR	11	Unmodified	_KGPSPPGAKRR_					0	0	0		nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8435668945312	2	575.843813	1149.67307	-0.26488	-0.00015253	-1.2073	-0.00069524	-1.4722	-0.00084777	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0183	1	11476	11476		32.751	2.4328	1	4946400			30974	4057	21418	21458	35483	35483					0.10422436476960684
KGPSPPGAKRR	11	Unmodified	_KGPSPPGAKRR_					0	0	0		nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8428344726562	2	575.843813	1149.67307	-1.2575	-0.00072414	-0.21498	-0.00012379	-1.4725	-0.00084794	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0075	1	11314	11314		35.152	4.8343	1	6251500			30975	4057	21418	21458	35484	35484					0.10422436476960684
KGPTKKPAR	9	Unmodified	_KGPTKKPAR_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7952880859375	2	491.811451	981.608348	-0.49409	-0.000243	-3.3328	-0.0016391	-3.8269	-0.0018821	491.8098854326692	48.657	0.21182	48.504	48.364	48.575	-0.15277					7	5	2	0	0	0	0.024427	1	4954	4954		14.137	0	1	144630	+		30976	29220	21419	21459	35485	35485					0.11680861670981812
KGPVRAEPP	9	Unmodified	_KGPVRAEPP_					0	0	0			REV__ENSG00000106246|ENST00000292478|PTCD1	REV__ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7879638671875	2	475.774534	949.534515	0.070365	3.3478E-05	-0.77632	-0.00036935	-0.70596	-0.00033588	475.7737934922477	60.349	0.93183	60.135	59.525	60.457	-0.21339					28	24	2	0	0	0	0.024397	1	6818	6818		31.53	1.0262	1	456480	+		30977	21602	21420	21460	35486	35486					0.057728935086515776
KGQDPPLM	8	Unmodified	_KGQDPPLM_					0	0	0		ENST00000422506.5_1_22:23981019-24037474:-|nuORF	ENST00000422506.5_1_22:23981019-24037474:-|nuORF	ENST00000422506.5_1_22:23981019-24037474:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.251708984375	2	443.228571	884.442588	-0.64849	-0.00028743	-2.3112	-0.0010244	-2.9597	-0.0013118	443.2280597763025	45.33	0.17007	45.231	45.084	45.254	-0.099449					5	4	2	0	0	0	0.027866	1	4288	4288		47.916	5.4411	1	79655			30978	14006	21421	21461	35487	35487					-0.004255329000329766
KGQELQLII	9	Unmodified	_KGQELQLII_					0	0	0			REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	MSMS	OPSCC_39_ClassI_Rep-2	2	521.3186645507812	2	521.318774	1040.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.257	1	64.984	64.484	65.484	-0.27282								0	0	0	0.1457	1	7682	7682		82.305	2.854	1		+		30979	28243	21422	21462	35488	35488					0.10430889028475576
KGQGAVRTL	9	Unmodified	_KGQGAVRTL_					0	0	0		ENST00000468303.5_1_1:24718525-24727878:-|nuORF	ENST00000468303.5_1_1:24718525-24727878:-|nuORF	ENST00000468303.5_1_1:24718525-24727878:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.2803955078125	2	465.279983	928.545414	-0.10815	-5.032E-05	0.19634	9.1352E-05	0.088188	4.1032E-05	465.2800347976175	24.491	0.81638	24.316	24.048	24.865	-0.17484					39	18	3	0	0	0	0.29158	1	1059	1059		76.774	16.48	1	1717300			30980	14864	21423	21463	35489	35489					0.07828295882939074
KGQIGWNYTNQ	11	Unmodified	_KGQIGWNYTNQ_					0	0	0			REV__ENST00000281830.3_1_2:223919256-223919388:+|nuORF	REV__ENST00000281830.3_1_2:223919256-223919388:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.881591796875	3	436.882559	1307.62585	-0.73495	-0.00032109	-3.4908	-0.0015251	-4.2258	-0.0018462	436.8815386837457	39.492	2.5444	39.393	39.054	41.599	-0.098755					204	70	6	0	0	0	0.75915	1	3442	3442		60.167	8.4399	1	55588000	+		30981	29886	21424	21464	35490	35490					-0.015658875846838782
KGQIIDTYVA	10	Unmodified	_KGQIIDTYVA_					0	0	0			REV__nc|ENSG00000144524|Q9H9Q2-2|COPS7B	REV__nc|ENSG00000144524|Q9H9Q2-2|COPS7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2907104492188	2	554.305864	1106.59717	-0.39604	-0.00021953	0.75792	0.00042012	0.36188	0.00020059	554.306101826036	60.537	0.64497	60.331	60.05	60.695	-0.20599					23	15	2	0	0	0	0.03519	1	6785	6785		42.396	1.618	1	241030	+		30982	24341	21425	21465	35491	35491					0.04813994786195508
KGQTEDFLL	9	Unmodified	_KGQTEDFLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.78564453125	2	525.776939	1049.53933	-0.45427	-0.00023885	0.42499	0.00022345	-0.029279	-1.5394E-05	525.7769415159324	26.957	0.72388	26.789	26.506	27.23	-0.16816					40	16	4	0	0	0	0.024381	1	1470	1470		37.159	16.677	1	676050	+		30983	21245	21426	21466	35492	35492					0.016537328607682866
KGQTEDFLL	9	Unmodified	_KGQTEDFLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.776939	1049.53933	-0.88188	-0.00046367	-0.38341	-0.00020159	-1.2653	-0.00066526	525.7767801397928	26.56	0.94947	26.56	26.124	27.073	0	-0.12254	-0.00065153	NaN	15.642	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203000	+		30984	21245	21426	21466							0.016537328607682866
KGQTEDFLL	9	Unmodified	_KGQTEDFLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.776939	1049.53933	-0.68593	-0.00036064	-0.54355	-0.00028579	-1.2295	-0.00064643	525.7766969083032	26.536	0.92717	26.513	26.164	27.091	-0.023088	-0.17005	-0.00081992	NaN	15.642	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209790	+		30985	21245	21426	21466							0.016537328607682866
KGQTEDFLL	9	Unmodified	_KGQTEDFLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.776939	1049.53933	-0.30131	-0.00015842	-1.0457	-0.00054979	-1.347	-0.00070821	525.776522096986	26.378	0.89995	26.459	26.131	27.031	0.081291	-0.2235	-0.0013479	NaN	15.642	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230840	+		30986	21245	21426	21466							0.016537328607682866
KGQVILTLN	9	Unmodified	_KGQVILTLN_					0	0	0		ENSG00000205784|ENST00000650722|ARRDC5;nc|ENSG00000205784|A6NEK1|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3073425292969	2	493.305667	984.596781	-0.12069	-5.9537E-05	3.5761	0.0017641	3.4554	0.0017046	493.3073562786403	100.93	1.3487	100.94	100.39	101.74	0.0090332					93	31	5	0	0	0	0.64897	1	12920	12920		49.536	1.6204	1	8015200			30987	10446	21427	21467	35493	35493					0.10386619856990364
KGQVNKQP	8	Unmodified	_KGQVNKQP_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7481689453125	2	449.758884	897.503215	-0.2204	-9.9127E-05	-2.2857	-0.001028	-2.5061	-0.0011271	449.75747727276627	30.907	0.69996	30.981	30.792	31.492	0.074314					20	16	2	0	0	0	0.027866	1	1985	1985		31.955	2.8053	1	103600	+		30988	20064	21428	21468	35494	35494					0.05036320474562217
KGRALKSSE	9	Unmodified	_KGRALKSSE_					0	0	0			REV__ENST00000392066.7_1_2:223789304-223791878:+|nuORF	REV__ENST00000392066.7_1_2:223789304-223791878:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2742919921875	2	488.282723	974.550893	0.088388	4.3158E-05	3.3792	0.00165	3.4676	0.0016932	488.28436199521326	52.83	0.65328	52.683	52.406	53.06	-0.14723					37	16	3	0	0	0	0.024427	1	5665	5665		42.396	13.247	1	1051100	+		30989	31595	21429	21469	35495	35495					0.06259974674753721
KGRFIGPSL	9	Unmodified	_KGRFIGPSL_					0	0	0			REV__ENST00000256646.6_1_1:120468383-120469137:-|nuORF	REV__ENST00000256646.6_1_1:120468383-120469137:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7911376953125	2	487.792727	973.5709	-0.96209	-0.0004693	-3.3876	-0.0016524	-4.3497	-0.0021217	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.85329	1	10259	10259		35.618	2.1253	1	1891000	+		30990	29556	21430	21470	35496	35496					0.08305770405377189
KGRLDPITITE	11	Unmodified	_KGRLDPITITE_					0	0	0			REV__ENSG00000100979|ENST00000372431|PLTP	REV__ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.9057922363281	3	414.906594	1241.69795	-0.045225	-1.8764E-05	-2.2645	-0.00093956	-2.3097	-0.00095832	414.9057411520974	21.247	1.3484	21.157	20.766	22.115	-0.090094					99	27	6	0	0	0	1.0281	1	631	631		30.569	7.0462	1	3818100	+		30991	21168	21431	21471	35497	35497					0.08677026769032636
KGRLKWTVHPL	11	Unmodified	_KGRLKWTVHPL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.63592529296875	3	445.606701	1333.79827	0.2474	0.00011024	-0.21449	-9.5577E-05	0.03291	1.4665E-05	445.6069843377009	40.081	0.22426	40.081	39.988	40.212	0					6	5	2	0	0	0	0.024723	1	3513	3513		25.068	0	1	31656	+		30992	20753	21432	21472	35498	35498					0.14472728613350228
KGRLPGEFS	9	Unmodified	_KGRLPGEFS_					0	0	0		nc|ENSG00000147889|P42771-3|CDKN2A	nc|ENSG00000147889|P42771-3|CDKN2A	nc|ENSG00000147889|P42771-3|CDKN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7731628417969	2	495.771991	989.529429	4.31	0.0021368	-1.1088	-0.00054969	3.2012	0.0015871	495.7713253641648	17.631	0.38977	17.381	17.179	17.569	-0.25049					10	7	2	0	0	0	0.98697	1	181	181		23.042	1.3402	1	34177			30993	18366	21433	21473	35499	35499					0.034245896460333825
KGRLPGEFS	9	Unmodified	_KGRLPGEFS_					0	0	0		nc|ENSG00000147889|P42771-3|CDKN2A	nc|ENSG00000147889|P42771-3|CDKN2A	nc|ENSG00000147889|P42771-3|CDKN2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.771991	989.529429	0.99414	0.00049287	1.9232	0.00095345	2.9173	0.0014463	495.77284809512514	17.537	0.29815	17.383	17.259	17.557	-0.15403	-0.0015926	0.0020372	NaN	23.042	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30681			30994	18366	21433	21473							0.034245896460333825
KGRLPGEFS	9	Unmodified	_KGRLPGEFS_					0	0	0		nc|ENSG00000147889|P42771-3|CDKN2A	nc|ENSG00000147889|P42771-3|CDKN2A	nc|ENSG00000147889|P42771-3|CDKN2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.771991	989.529429	-0.15885	-7.8755E-05	3.6161	0.0017928	3.4573	0.001714	495.7733527504997	17.596	0.39863	17.39	17.216	17.614	-0.20669	0.0052589	0.0037158	NaN	23.042	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20580			30995	18366	21433	21473							0.034245896460333825
KGRLQAITD	9	Unmodified	_KGRLQAITD_					0	0	0		ENSG00000099260|ENST00000263174|PALMD	ENSG00000099260|ENST00000263174|PALMD	ENSG00000099260|ENST00000263174|PALMD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2904968261719	2	501.290548	1000.56654	0.26855	0.00013462	-0.67377	-0.00033776	-0.40522	-0.00020314	501.29013148905653	98.06	1.8047	98.07	97.728	99.533	0.010239					61	41	2	0	0	0	0.85329	1	12472	12472		35.618	0	1	1873800			30996	2066	21434	21474	35500	35500					0.0662826119176998
KGRPIRAGVL	10	Unmodified	_KGRPIRAGVL_					0	0	0			REV__ENST00000502503.1_1_5:93410379-93447342:-|nuORF	REV__ENST00000502503.1_1_5:93410379-93447342:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8051147460938	2	533.845825	1065.6771	-1.21	-0.00064594	-4.3303	-0.0023117	-5.5403	-0.0029577	534.3430493860843	45.089	0.31248	44.94	44.697	45.009	-0.1488					12	8	2	0	0	0	0.03519	1	4315	4315		45.952	19.156	1	94814	+		30997	33931	21435	21475	35501	35501					0.1468852597070054
KGRRRLVG	8	Unmodified	_KGRRRLVG_					0	0	0		ENST00000554799.1_1_14:76637034-76644553:+|nuORF;nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L;nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L;ENSG00000089916|ENST00000261530|GPATCH2L	ENST00000554799.1_1_14:76637034-76644553:+|nuORF	ENST00000554799.1_1_14:76637034-76644553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.30908203125	2	471.30941	940.604266	1.5197	0.00071624	-2.1623	-0.0010191	-0.64262	-0.00030287	471.3084331857164	17.339	0.65063	17.185	17.007	17.658	-0.15403					35	12	4	0	0	0	0.95417	1	178	178		44.531	3.9584	1	2941000			30998	1919	21436	21476	35502	35502					0.13158816967927578
KGSKSIYEI	9	Unmodified	_KGSKSIYEI_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL;REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.795166015625	2	512.787307	1023.56006	-0.90595	-0.00046456	1.6264	0.00083401	0.72047	0.00036945	512.788179443238	38.228	0.97612	38.145	37.777	38.753	-0.082516					91	26	6	0	0	0	0.26966	1	3159	3159		79.713	7.8351	1	10576000	+		30999	27172;36978	21437	21477	35503	35503					0.04922323240418791
KGSPRALH	8	Unmodified	_KGSPRALH_					0	0	0		ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2568664550781	2	433.253769	864.492984	0.082102	3.5571E-05	1.561	0.00067629	1.6431	0.00071187	433.25533421616046	102.79	2.2075	102.8	102.41	104.62	0.0054245					176	55	6	0	0	0	0.88442	2	13255	13172;13255		52.299	5.5327	1	219000000			31000	15851	21438	21478	35504;35505	35505					0.05531757539984028
KGSPRALH	8	Unmodified	_KGSPRALH_					0	0	0		ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.2554626464844	2	433.253769	864.492984	0.5502	0.00023838	2.408	0.0010433	2.9582	0.0012816	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	0.95417	2	13120	13096;13120		44.531	9.3304	1	237570000			31001	15851	21438	21478	35506;35507	35507					0.05531757539984028
KGSPRALH	8	Unmodified	_KGSPRALH_					0	0	0		ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.25543212890625	2	433.253769	864.492984	0.068768	2.9794E-05	2.9354	0.0012718	3.0042	0.0013016	433.25539260258705	102.94	2.6221	102.81	102.45	105.08	-0.12783					130	72	2	0	0	0	0.88442	4	12833	12833;12845;12898;12932		52.299	15.271	1	236480000			31002	15851	21438	21478	35508;35509;35510;35511	35508					0.05531757539984028
KGSPRALH	8	Unmodified	_KGSPRALH_					0	0	0		ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2552490234375	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.03	1	102.86	102.36	103.36	-0.17034								0	0	0	0.6544	1	12796	12796		44.531	2.0566	1				31003	15851	21438	21478	35512	35512					0.05531757539984028
KGSPRALH	8	Unmodified	_KGSPRALH_					0	0	0		ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2554016113281	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.11	1	102.94	102.44	103.44	-0.17034								0	0	0	0.57512	1	12808	12808		50.025	5.4935	1				31004	15851	21438	21478	35513	35513					0.05531757539984028
KGSPRALH	8	Unmodified	_KGSPRALH_					0	0	0		ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	ENST00000512101.5_1_11:67058263-67058509:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2551574707031	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.52	1	103.35	102.85	103.85	-0.17034								0	0	0	0.54229	1	12862	12862		52.299	4.3836	1				31005	15851	21438	21478	35514	35514					0.05531757539984028
KGSVPLGLA	9	Unmodified	_KGSVPLGLA_					0	0	0		ENSG00000147457|ENST00000397677|CHMP7;nc|ENSG00000147457|Q8WUX9-2|CHMP7;ENST00000519529.1_1_8:23104208-23115846:+|nuORF	ENSG00000147457|ENST00000397677|CHMP7	ENSG00000147457|ENST00000397677|CHMP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.7439880371094	2	421.260728	840.506903	-0.80805	-0.0003404	1.7859	0.00075234	0.97789	0.00041194	421.2613072028141	26.963	0.73426	27.044	26.799	27.534	0.081293					41	19	4	0	0	0	0.024021	1	1428	1428		40.778	11.629	1	698190			31006	5968	21439	21479	35515	35515					0.08026990248413313
KGSVPLGLA	9	Unmodified	_KGSVPLGLA_					0	0	0		ENSG00000147457|ENST00000397677|CHMP7;nc|ENSG00000147457|Q8WUX9-2|CHMP7;ENST00000519529.1_1_8:23104208-23115846:+|nuORF	ENSG00000147457|ENST00000397677|CHMP7	ENSG00000147457|ENST00000397677|CHMP7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	421.260728	840.506903	-0.33547	-0.00014132	0.97286	0.00040983	0.63739	0.00026851	421.2609672760407	27.175	0.56261	27.175	26.908	27.471	0	0.1011	1.2185E-05	NaN	40.778	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	564230			31007	5968	21439	21479							0.08026990248413313
KGSVPLGLA	9	Unmodified	_KGSVPLGLA_					0	0	0		ENSG00000147457|ENST00000397677|CHMP7;nc|ENSG00000147457|Q8WUX9-2|CHMP7;ENST00000519529.1_1_8:23104208-23115846:+|nuORF	ENSG00000147457|ENST00000397677|CHMP7	ENSG00000147457|ENST00000397677|CHMP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	421.260728	840.506903	-0.30108	-0.00012683	1.5065	0.00063464	1.2055	0.00050781	421.2606693699283	27.25	0.5489	27.008	26.786	27.335	-0.24217	-0.066699	0.00046182	NaN	40.778	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380250			31008	5968	21439	21479							0.08026990248413313
KGSVPLGLA	9	Unmodified	_KGSVPLGLA_					0	0	0		ENSG00000147457|ENST00000397677|CHMP7;nc|ENSG00000147457|Q8WUX9-2|CHMP7;ENST00000519529.1_1_8:23104208-23115846:+|nuORF	ENSG00000147457|ENST00000397677|CHMP7	ENSG00000147457|ENST00000397677|CHMP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	421.260728	840.506903	-0.31705	-0.00013356	0.37759	0.00015906	0.060544	2.5505E-05	421.2607767999869	27.107	0.33308	26.939	26.68	27.013	-0.16816	-0.13507	-0.00048934	NaN	40.778	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382640			31009	5968	21439	21479							0.08026990248413313
KGSVPLGLA	9	Unmodified	_KGSVPLGLA_					0	0	0		ENSG00000147457|ENST00000397677|CHMP7;nc|ENSG00000147457|Q8WUX9-2|CHMP7;ENST00000519529.1_1_8:23104208-23115846:+|nuORF	ENSG00000147457|ENST00000397677|CHMP7	ENSG00000147457|ENST00000397677|CHMP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	421.260728	840.506903	0.0079589	3.3528E-06	-1.0071	-0.00042424	-0.99912	-0.00042089	421.26014187944776	27.352	0.29522	27.195	26.93	27.225	-0.15664	0.12083	-0.001656	NaN	40.778	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687290			31010	5968	21439	21479							0.08026990248413313
KGSVRGLS	8	Unmodified	_KGSVRGLS_					0	0	0			REV__ENST00000582077.5_1_18:66382472-66382625:+|nuORF	REV__ENST00000582077.5_1_18:66382472-66382625:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.208740234375	2	402.240327	802.466101	1.5432	0.00062075	0.65897	0.00026506	2.2022	0.00088581	402.2404697088891	19.622	0.95692	19.622	19.366	20.323	0					35	19	3	0	0	0	0.027866	1	477	477		6.7355	3.0512	1	186770	+		31011	35538	21440	21480	35516	35516					0.05696648928801551
KGSVRGLS	8	Unmodified	_KGSVRGLS_					0	0	0			REV__ENST00000582077.5_1_18:66382472-66382625:+|nuORF	REV__ENST00000582077.5_1_18:66382472-66382625:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	402.240327	802.466101	0.30529	0.0001228	1.8637	0.00074967	2.169	0.00087247	402.24094879580724	19.829	0.91515	19.71	19.495	20.41	-0.11872	-0.01759	0.0013606	NaN	6.7355	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152740	+		31012	35538	21440	21480							0.05696648928801551
KGSVRGLS	8	Unmodified	_KGSVRGLS_					0	0	0			REV__ENST00000582077.5_1_18:66382472-66382625:+|nuORF	REV__ENST00000582077.5_1_18:66382472-66382625:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	402.240327	802.466101	4.3961	0.0017683	-2.2037	-0.00088642	2.1924	0.00088189	402.2393036807068	19.785	1.2679	19.851	19.587	20.855	0.066195	0.12328	-0.0019115	NaN	6.7355	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203040	+		31013	35538	21440	21480							0.05696648928801551
KGTCAPPF	8	Unmodified	_KGTCAPPF_					0	0	0			REV__ENST00000498154.5_1_3:71630880-71630949:-|nuORF	REV__ENST00000498154.5_1_3:71630880-71630949:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	410.7432556152344	2	410.704731	819.39491	-0.95606	-0.00039266	3.8252	0.001571	2.8691	0.0011784	410.7068323570615	38.32	0.34805	38.348	38.264	38.612	0.027275					12	9	2	0	0	0	0.027866	1	3144	3144		28.254	1.4582	1	45519	+		31014	33873	21441	21481	35517	35517					-0.022011871002291628
KGTCAPPF	8	Unmodified	_KGTCAPPF_					0	0	0			REV__ENST00000498154.5_1_3:71630880-71630949:-|nuORF	REV__ENST00000498154.5_1_3:71630880-71630949:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	410.704731	819.39491	-0.52308	-0.00021483	-2.9296	-0.0012032	-3.4527	-0.001418	410.7032323488243	38.497	0.46811	38.275	37.99	38.458	-0.22149	-0.018116	-0.00032191	NaN	20.482	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130950	+		31015	33873	21441	21481							-0.022011871002291628
KGTCAPPF	8	Unmodified	_KGTCAPPF_					0	0	0			REV__ENST00000498154.5_1_3:71630880-71630949:-|nuORF	REV__ENST00000498154.5_1_3:71630880-71630949:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	410.704731	819.39491	-0.26164	-0.00010746	-4.0287	-0.0016546	-4.2904	-0.0017621	410.7030334892108	38.475	0.58841	38.257	38.019	38.607	-0.21849	-0.036309	-0.0012248	NaN	20.482	17	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82595	+		31016	33873	21441	21481							-0.022011871002291628
KGTGMRPP	8	Unmodified	_KGTGMRPP_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.2791442871094	2	422.228905	842.443257	0.11307	4.774E-05	-0.31724	-0.00013395	-0.20417	-8.6206E-05	422.2287774746953	29.476	0.87866	29.326	28.956	29.835	-0.14952					22	20	2	0	0	0	0.027866	1	1765	1765		47.916	28.556	1	121620			31017	1686	21442	21482	35518	35518					0.015733065396716484
KGTGPLVVYSL	11	Unmodified	_KGTGPLVVYSL_					0	0	0			REV__ENST00000515678.5_1_4:146042303-146044753:+|nuORF	REV__ENST00000515678.5_1_4:146042303-146044753:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3299560546875	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0292	1	11307	11307		30.318	3.2704	1	4298500	+		31018	34205	21443	21483	35519	35519					0.0881915819995811
KGTIIRGPLED	11	Unmodified	_KGTIIRGPLED_					0	0	0			REV__nc|ENSG00000010932|Q01740-2|FMO1	REV__nc|ENSG00000010932|Q01740-2|FMO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.23052978515625	3	400.231189	1197.67174	0.83763	0.00033525	-3.5024	-0.0014018	-2.6648	-0.0010665	400.22992138935825	22.077	1.5417	22.077	21.537	23.079	0					111	32	5	0	0	0	0.9703	1	756	756		43.419	1.0805	1	7007000	+		31019	19913	21444	21484	35520	35520					0.08080757597554111
KGTIIRGPLED	11	Unmodified	_KGTIIRGPLED_					0	0	0			REV__nc|ENSG00000010932|Q01740-2|FMO1	REV__nc|ENSG00000010932|Q01740-2|FMO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.2303771972656	3	400.231189	1197.67174	1.79	0.00071642	-4.2644	-0.0017068	-2.4744	-0.00099034	400.2295883128697	21.979	1.5639	22.051	21.546	23.11	0.071487					115	32	6	0	0	0	0.91387	1	713	713		50.791	8.4532	1	6027300	+		31020	19913	21444	21484	35521	35521					0.08080757597554111
KGTLVESH	8	Unmodified	_KGTLVESH_					0	0	0			REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	REV__nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	435.737617	869.460681	-0.46013	-0.0002005	0.77488	0.00033764	0.31474	0.00013715	435.73760956079127	39.483	0.21557	39.507	39.455	39.671	0.023727					7	5	2	0	0	0	0.027866	1	3331	3331		12.207	0	1	63165	+		31021	28115	21445	21485	35522	35522					0.020729253463287023
KGTPKPTI	8	Unmodified	_KGTPKPTI_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.7439270019531	2	421.260728	840.506903	-0.38532	-0.00016232	1.1214	0.0004724	0.73607	0.00031008	421.26103124801745	27.097	0.93053	27.084	26.869	27.799	-0.012983					44	24	3	0	0	0	0.027866	1	1516	1516		45.952	0	1	554950			31022	5635	21446	21486	35523	35523					0.08026990248424681
KGTRWAAMR	9	Unmodified	_KGTRWAAMR_					0	0	0			REV__ENST00000216484.6_1_14:78082831-78082945:-|nuORF	REV__ENST00000216484.6_1_14:78082831-78082945:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.8131103515625	2	538.792735	1075.57092	-0.6284	-0.00033858	3.2641	0.0017587	2.6357	0.0014201	538.7943916087429	71.086	0.8102	71.096	70.769	71.579	0.010735					35	20	2	0	0	0	0.024466	1	8562	8562		31.53	0	1	592780	+		31023	29322	21447	21487	35524	35524					0.03615447133711314
KGTSKRPQT	9	Unmodified	_KGTSKRPQT_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76287841796875	2	501.788173	1001.56179	-0.73569	-0.00036916	-1.1761	-0.00059017	-1.9118	-0.00095933	501.78767790397274	32.98	0.59712	32.987	32.483	33.08	0.0066261					21	15	2	0	0	0	0.024374	1	2320	2320		19.104	0	1	300170	+		31024	28212	21448	21488	35525	35525					0.06107377049045226
KGVGPAGLL	9	Unmodified	_KGVGPAGLL_					0	0	0			REV__ENSG00000166592|ENST00000299759|RRAD	REV__ENSG00000166592|ENST00000299759|RRAD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.15838623046875	2	406.255446	810.496338	-0.6138	-0.00024936	4.333	0.0017603	3.7192	0.001511	406.2571176958159	34.636	1.0981	34.461	34.252	35.35	-0.17557					49	27	3	0	0	0	0.024466	1	2587	2587		18.324	11.131	1	221190	+		31025	26038	21449	21489	35526	35526					0.08351007594001203
KGVGPAGLL	9	Unmodified	_KGVGPAGLL_					0	0	0			REV__ENSG00000166592|ENST00000299759|RRAD	REV__ENSG00000166592|ENST00000299759|RRAD	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	406.255446	810.496338	0.56059	0.00022774	3.1645	0.0012856	3.725	0.0015133	406.2566280681906	34.865	1.0554	34.865	34.552	35.608	0	0.26432	-0.00021397	NaN	18.324	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197700	+		31026	26038	21449	21489							0.08351007594001203
KGVGPAGLL	9	Unmodified	_KGVGPAGLL_					0	0	0			REV__ENSG00000166592|ENST00000299759|RRAD	REV__ENSG00000166592|ENST00000299759|RRAD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	406.255446	810.496338	0.025722	1.045E-05	3.8813	0.0015768	3.9071	0.0015873	406.25685762904965	34.549	1.3898	34.544	34.336	35.726	-0.0045624	-0.056437	0.00036851	NaN	18.324	55	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180750	+		31027	26038	21449	21489							0.08351007594001203
KGVGPAGLL	9	Unmodified	_KGVGPAGLL_					0	0	0			REV__ENSG00000166592|ENST00000299759|RRAD	REV__ENSG00000166592|ENST00000299759|RRAD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	406.255446	810.496338	1.0258	0.00041674	2.7034	0.0010983	3.7292	0.001515	406.2563998475881	34.688	1.1048	34.739	34.518	35.623	0.050255	0.13815	-0.00058856	NaN	18.324	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201170	+		31028	26038	21449	21489							0.08351007594001203
KGVIHIRVVVK	11	Unmodified	_KGVIHIRVVVK_					0	0	0		nc|ENSG00000181991|P82912-3|MRPS11;nc|ENSG00000181991|P82912-2|MRPS11;ENSG00000181991|ENST00000325844|MRPS11	nc|ENSG00000181991|P82912-3|MRPS11	nc|ENSG00000181991|P82912-3|MRPS11	MSMS	OPSCC_40_ClassI_Rep-2	5	624.4140014648438	2	624.419157	1246.82376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.68	1	107.54	107.04	108.04	-0.13649								0	0	0	1.7118	1	13354	13354		5.5578	2.3986	1				31029	9088	21450	21490	35527	35527					0.21022203135771633
KGVKKTYL	8	Unmodified	_KGVKKTYL_					0	0	0			REV__ENST00000503574.1_1_4:109543115-109543474:+|nuORF	REV__ENST00000503574.1_1_4:109543115-109543474:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.745849609375	2	468.797478	935.580402	1.178	0.00055225	-3.9767	-0.0018643	-2.7987	-0.001312	468.7955521790802	19.976	0.29012	19.776	19.653	19.943	-0.2001					7	5	2	0	0	0	0.027866	1	468	468		13.775	9.0936	1	47001	+		31030	21796	21451	21491	35528	35528					0.11003538690886217
KGVLWGPDA	9	Unmodified	_KGVLWGPDA_					0	0	0			REV__ENST00000373451.8_1_6:37401002-37401065:+|nuORF	REV__ENST00000373451.8_1_6:37401002-37401065:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.29241943359375	2	471.75581	941.497067	0.085156	4.0173E-05	0.64936	0.00030634	0.73451	0.00034651	471.75591125811707	53.116	0.48584	52.969	52.682	53.168	-0.14723					16	12	2	0	0	0	0.024205	1	5663	5663		63.306	19.189	1	94413	+		31031	31256	21452	21492	35529	35529					0.023978022430242163
KGVPGLLIF	9	Unmodified	_KGVPGLLIF_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.24932861328125	2	472.302396	942.590239	-1.5387	-0.00072673	-2.6299	-0.0012421	-4.1686	-0.0019689	472.30088698932246	21.454	0.72948	21.241	21.02	21.749	-0.2128					19	14	2	0	0	0	0.024466	1	637	637		25.45	0	1	114540	+		31032	20160	21453	21493	35530	35530					0.1166472669626728
KGVRVVTASA	10	Unmodified	_KGVRVVTASA_					0	0	0			REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.30078125	2	494.300916	986.587279	0.003029	1.4972E-06	-0.62374	-0.00030831	-0.62071	-0.00030682	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	1.0719	2	12364	12219;12364		36.447	4.8369	1	42897000	+		31033	25575	21454	21494	35531;35532	35532					0.09344851571461277
KGVRVVTASA	10	Unmodified	_KGVRVVTASA_					0	0	0			REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.3007507324219	2	494.300916	986.587279	0.83498	0.00041273	-1.1174	-0.00055231	-0.28239	-0.00013958	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	1.0616	1	11901	11901		37.812	3.639	1	37582000	+		31034	25575	21454	21494	35533	35533					0.09344851571461277
KGVTGTKLKF	10	Unmodified	_KGVTGTKLKF_					0	0	0			REV__ENSG00000163798|ENST00000326019|SLC4A1AP	REV__ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8329467773438	2	539.834591	1077.65463	0.17235	9.3039E-05	-3.1548	-0.0017031	-2.9825	-0.0016101	539.8327586214007	19.021	0.54469	18.86	18.639	19.183	-0.16079					23	10	3	0	0	0	1.0508	1	386	386		39.253	8.7492	1	424610	+		31035	25634	21455	21495	35534	35534					0.11890881782414908
KGVVADRRY	9	Unmodified	_KGVVADRRY_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.3041381835938	2	532.30399	1062.59343	0.14144	7.5292E-05	0.18366	9.7765E-05	0.32511	0.00017306	532.3036339279557	19.369	0.88638	19.208	18.984	19.871	-0.16079					40	17	3	0	0	0	0.70186	1	415	415		45.952	1.8352	1	488040			31036	8685	21456	21496	35535	35535					0.06463369802986563
KGVVLSDYAA	10	Unmodified	_KGVVLSDYAA_					0	0	0			REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.77947998046875	2	511.779482	1021.54441	-0.74242	-0.00037996	-0.6042	-0.00030922	-1.3466	-0.00068917	511.77939508185494	29.619	1.1097	29.374	29.011	30.121	-0.24524					93	25	6	0	0	0	1.089	1	1861	1861		34.173	2.2177	1	7571100	+		31037	22975	21457	21497	35536	35536					0.03450036723370431
KGWDGYDVQW	10	Unmodified	_KGWDGYDVQW_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.2828369140625	2	627.28292	1252.55129	-1.0406	-0.00065275	0.72352	0.00045385	-0.31707	-0.00019889	627.2832544566149	68.908	1.1146	68.646	68.301	69.415	-0.26165					80	26	4	0	0	0	0.1587	3	7967	7967;7977;7990		126.24	32.645	1	3857800			31038	4737	21458	21498	35537;35538;35539	35537					-0.06488650396045159
KGWDGYDVQW	10	Unmodified	_KGWDGYDVQW_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	627.282470703125	2	627.28292	1252.55129	-0.46635	-0.00029253	0.034762	2.1806E-05	-0.43159	-0.00027073	627.2828717499843	68.862	1.2672	68.619	68.307	69.574	-0.24277					89	30	4	0	0	0	0.10407	4	7990	7967;7978;7990;8002		134.77	57.448	1	3547000			31039	4737	21458	21498	35540;35541;35542;35543	35542					-0.06488650396045159
KGWDGYDVQW	10	Unmodified	_KGWDGYDVQW_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	627.2822875976562	2	627.28292	1252.55129	-0.050908	-3.1934E-05	-0.27797	-0.00017436	-0.32888	-0.0002063	627.2826211894991	68.892	1.1085	68.662	68.357	69.466	-0.23047					77	26	4	0	0	0	0.1169	4	7968	7957;7968;7980;7993		131.62	30.156	1	3353300			31040	4737	21458	21498	35544;35545;35546;35547	35545					-0.06488650396045159
KGWKKTMLA	9	Unmodified	_KGWKKTMLA_					0	0	0		ENST00000444508.5_1_2:217277387-217279388:+|nuORF	ENST00000444508.5_1_2:217277387-217279388:+|nuORF	ENST00000444508.5_1_2:217277387-217279388:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8084106445312	2	531.810062	1061.60557	-0.72976	-0.0003881	-2.8384	-0.0015095	-3.5682	-0.0018976	531.80857254123	47.872	1.5636	47.719	47.3	48.864	-0.15301					173	45	5	0	0	0	0.37611	1	4876	4876		67.494	6.5217	1	57542000			31041	14423	21459	21499	35548	35548					0.07723270221799794
KGWREGSEI	9	Unmodified	_KGWREGSEI_					0	0	0			REV__SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|40|3|sense	REV__SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|40|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2677001953125	2	531.272355	1060.53016	-0.79996	-0.000425	3.587	0.0019057	2.787	0.0014807	531.2737624027036	23.403	0.3689	23.223	23.067	23.436	-0.17989					15	8	2	0	0	0	0.024457	1	910	910		37.159	9.2769	1	181040	+		31042	37640	21460	21500	35549	35549					0.0023138429510254355
KGYIGVVK	8	Unmodified	_KGYIGVVK_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	431.5511779785156	2	432.271096	862.527639	-0.3773	-0.0001631	-0.3822	-0.00016521	-0.7595	-0.00032831	432.270431211892	36.437	0.34939	36.437	36.298	36.648	0					14	9	2	0	0	0	0.027866	1	2903	2903		31.955	6.5047	1	44718			31043	9842	21461	21501	35550	35550					0.09087580628090564
KGYIGVVK	8	Unmodified	_KGYIGVVK_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	431.5512390136719	2	432.271096	862.527639	-0.86345	-0.00037325	0.80318	0.00034719	-0.060269	-2.6053E-05	432.2712014099946	36.247	0.24821	36.204	36.067	36.315	-0.042454					9	6	2	0	0	0	0.027866	1	2851	2851		31.955	10.253	1	74139			31044	9842	21461	21501	35551	35551					0.09087580628090564
KGYLAAEHLA	10	Unmodified	_KGYLAAEHLA_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.746337890625	2	536.792924	1071.57129	-1.1447	-0.00061448	-3.3467	-0.0017965	-4.4915	-0.002411	536.7909879987478	30.224	0.71502	30.046	29.782	30.497	-0.17817					41	16	3	0	0	0	0.03519	1	1897	1897		35.618	5.3006	1	1208000	+		31045	27103	21462	21502	35552	35552					0.03837145334568959
KGYLAAEHLA	10	Unmodified	_KGYLAAEHLA_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.792924	1071.57129	-0.68653	-0.00036852	-3.2042	-0.00172	-3.8908	-0.0020885	536.7906785625819	30.346	0.80416	30.102	29.82	30.624	-0.24415	0.025405	0.00012685	NaN	32.812	68	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1440800	+		31046	27103	21462	21502							0.03837145334568959
KGYRTVVALDK	11	Unmodified	_KGYRTVVALDK_					0	0	0		ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	625.3680419921875	2	625.366787	1248.71902	0.65152	0.00040744	-1.3666	-0.00085465	-0.71512	-0.00044721	625.3656791516368	100.02	0.72812	99.885	99.595	100.32	-0.13364					60	21	3	0	0	0	0.98904	1	12433	12433		39.253	1.4413	1	5225100			31047	10525	21463	21503	35553	35553					0.10461036868559859
KGYVKGLKIKH	11	Unmodified	_KGYVKGLKIKH_					0	0	0			REV__nc|ENSG00000105855|P26012-2|ITGB8	REV__nc|ENSG00000105855|P26012-2|ITGB8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.7269287109375	3	424.271319	1269.79213	-0.42833	-0.00018173	-2.7976	-0.0011869	-3.2259	-0.0013687	424.26994205950706	34.067	0.59451	34.117	33.884	34.479	0.050255					28	14	3	0	0	0	0.024735	1	2471	2471		27.644	5.0823	1	111410	+		31048	21570	21464	21504	35554	35554					0.1680221038182026
KHAGHTLL	8	Unmodified	_KHAGHTLL_					0	0	0		ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.2636413574219	2	438.756144	875.497735	-0.30654	-0.0001345	0.63668	0.00027935	0.33013	0.00014485	438.75639214506145	41.253	0.74469	41.026	40.767	41.512	-0.2278					31	18	3	0	0	0	0.027866	1	3594	3594		24.203	0	1	721620			31049	1765	21465	21505	35555	35555					0.05500641682760943
KHALLSLTL	9	Unmodified	_KHALLSLTL_					0	0	0		ADGRD1|p.S256L|1|0.22|ENSG00000111452|chr12:130991035-130991035|C/T|missense_variant	ADGRD1|p.S256L|1|0.22|ENSG00000111452|chr12:130991035-130991035|C/T|missense_variant	ADGRD1|p.S256L|1|0.22|ENSG00000111452|chr12:130991035-130991035|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2983703613281	2	498.316035	994.617516	0.095453	4.7566E-05	3.2655	0.0016272	3.3609	0.0016748	498.3156604217071	61.586	0.42155	61.586	61.374	61.796	0					15	10	2	0	0	0	0.022832	1	7166	7166		93.195	26.766	1	158470			31050	35	21466	21506	35556	35556					0.11999210236660929
KHANIVTLH	9	Unmodified	_KHANIVTLH_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000476153.6_1_1:205492708-205496295:+|nuORF;ENST00000428400.5_1_X:47082893-47085639:+|nuORF;ENST00000522234.5_1_X:47078210-47085639:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	nc|ENSG00000059758|Q00537-2|CDK17;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;ENSG00000102225|ENST00000357227|CDK16	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.8011474609375	2	516.801083	1031.58761	-0.77404	-0.00040003	0.54798	0.0002832	-0.22606	-0.00011683	516.8012048911206	36.829	1.1424	36.867	36.579	37.721	0.038044					71	29	4	0	0	0	0.83071	1	2905	2905		37.159	3.6435	1	2738200			31051	1225;15735;2393	21467	21507	35557	35557					0.07308271291344681
KHAPPGLR	8	Unmodified	_KHAPPGLR_					0	0	0			REV__ENSG00000204424|ENST00000375832|LY6G6F	REV__ENSG00000204424|ENST00000375832|LY6G6F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.26361083984375	2	438.264136	874.51372	-0.26291	-0.00011522	-0.84996	-0.00037251	-1.1129	-0.00048773	438.2635997660627	40.938	1.3336	40.71	40.366	41.699	-0.2278					73	34	3	0	0	0	1.0239	1	3581	3581		33.516	1.5607	1	1881500	+		31052	28603	21468	21508	35558	35558					0.07144347919654592
KHAPPGLR	8	Unmodified	_KHAPPGLR_					0	0	0			REV__ENSG00000204424|ENST00000375832|LY6G6F	REV__ENSG00000204424|ENST00000375832|LY6G6F	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.2636413574219	2	438.264136	874.51372	-0.442	-0.00019371	-0.83211	-0.00036468	-1.2741	-0.00055839	438.26364621628903	41.031	1.8467	40.801	40.485	42.331	-0.23029					96	49	4	0	0	0	0.99042	1	3570	3570		38.806	5.2906	1	1620600	+		31053	28603	21468	21508	35559	35559					0.07144347919654592
KHAPPGLR	8	Unmodified	_KHAPPGLR_					0	0	0			REV__ENSG00000204424|ENST00000375832|LY6G6F	REV__ENSG00000204424|ENST00000375832|LY6G6F	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	438.264136	874.51372	-0.59613	-0.00026126	-0.38446	-0.00016849	-0.98059	-0.00042976	438.2637601024111	40.82	1.1707	40.684	40.381	41.552	-0.13554	-0.047437	0.00031937	NaN	38.806	61	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1804200	+		31054	28603	21468	21508							0.07144347919654592
KHAPPGLR	8	Unmodified	_KHAPPGLR_					0	0	0			REV__ENSG00000204424|ENST00000375832|LY6G6F	REV__ENSG00000204424|ENST00000375832|LY6G6F	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	438.264136	874.51372	-0.26291	-0.00011522	-0.84996	-0.00037251	-1.1129	-0.00048773	438.2635997660627	40.938	1.3336	40.71	40.366	41.699	-0.2278	-0.021709	-8.8659E-05	NaN	38.806	73	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1881500	+		31055	28603	21468	21508							0.07144347919654592
KHAPSLSTF	9	Unmodified	_KHAPSLSTF_					0	0	0			REV__ENST00000496060.1_1_2:95821258-95821402:-|nuORF	REV__ENST00000496060.1_1_2:95821258-95821402:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7396545410156	2	494.266542	986.51853	-0.28454	-0.00014064	-0.63325	-0.00031299	-0.91778	-0.00045363	494.266213471843	53.681	0.53873	53.483	53.201	53.74	-0.19739					24	15	2	0	0	0	0.024209	1	5608	5608		76.774	27.333	1	278560	+		31056	33814	21469	21509	35560	35560					0.02473187271743882
KHARGRLVLY	10	Unmodified	_KHARGRLVLY_					0	0	0		RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	607.848388671875	2	606.869831	1211.72511	-1.2343	-0.00074905	0.2463	0.00014947	-0.98799	-0.00059958	606.8697701874991	42.289	0.41844	42.315	42.186	42.605	0.026012					18	11	2	0	0	0	0.03519	1	3800	3800		16.473	0	1	88477			31057	6990	21470	21510	35561	35561					0.12771599890766083
KHCAIHVF	8	Unmodified	_KHCAIHVF_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7525329589844	2	477.752547	953.490542	-0.0015752	-7.5255E-07	3.267	0.0015608	3.2654	0.0015601	477.7536851183298	33.764	0.5386	33.76	33.449	33.988	-0.0045624					18	13	2	0	0	0	0.027866	1	2414	2414		39.021	3.4032	1	186970			31058	4271	21471	21511	35562	35562					0.011935858106767228
KHDDEYLNV	9	Unmodified	_KHDDEYLNV_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.7689819335938	2	566.767103	1131.51965	-1.0085	-0.00057157	4.4649	0.0025306	3.4564	0.001959	566.7695242278413	84.06	0.68655	84.06	83.735	84.422	0					45	15	4	0	0	0	0.33245	1	10524	10524		71.296	7.7619	1	870450	+		31059	27506	21472	21512	35563	35563					-0.0408464315000856
KHDLYVLY	8	Unmodified	_KHDLYVLY_					0	0	0		ENST00000357430.7_1_2:223806358-223806715:+|nuORF	ENST00000357430.7_1_2:223806358-223806715:+|nuORF	ENST00000357430.7_1_2:223806358-223806715:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7826538085938	2	525.784567	1049.55458	-0.067203	-3.5334E-05	-4.2166	-0.002217	-4.2838	-0.0022524	525.7823705063088	49.99	1.1902	49.71	49.359	50.549	-0.27977					84	31	6	0	0	0	0.94517	1	5055	5055		45.952	1.5748	1	15789000			31060	12693	21473	21513	35564	35564					0.03178644448621526
KHDTHINI	8	Unmodified	_KHDTHINI_					0	0	0		nc|ENSG00000082512|O00463-2|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-3|TRAF5	nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-2|TRAF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2711181640625	2	489.261791	976.509028	-0.077849	-3.8089E-05	0.87441	0.00042781	0.79656	0.00038973	489.26225218978084	23.95	0.60707	23.77	23.395	24.002	-0.17989					27	13	3	0	0	0	0.027866	1	1008	1008		11.511	0	1	128550			31061	1735	21474	21514	35565	35565					0.019834189862194762
KHEHTETK	8	Unmodified	_KHEHTETK_					0	0	0			REV__ENST00000504083.1_1_5:102530578-102537332:+|nuORF	REV__ENST00000504083.1_1_5:102530578-102537332:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2455139160156	2	505.256705	1008.49886	-0.33515	-0.00016934	4.4146	0.0022305	4.0794	0.0020612	505.2583430246049	33.391	0.63475	33.191	32.73	33.365	-0.20019					31	15	3	0	0	0	0.027866	1	2322	2322		17.365	0	1	86187	+		31062	24426	21475	21515	35566	35566					-0.00505188738986817
KHFFYLLV	8	Unmodified	_KHFFYLLV_					0	0	0			REV__ENST00000560489.2_1_15:49657539-49658184:-|nuORF	REV__ENST00000560489.2_1_15:49657539-49658184:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2713012695312	2	533.807845	1065.60114	0.42418	0.00022643	-0.33522	-0.00017895	0.088955	4.7485E-05	533.8077029054151	59.251	0.81117	59.251	58.787	59.598	0					44	21	3	0	0	0	0.027866	1	6802	6802		39.021	8.5179	1	1678400	+		31063	35148	21476	21516	35567	35567					0.07096129070555435
KHFKSTSN	8	Unmodified	_KHFKSTSN_					0	0	0		ENSG00000116191|ENST00000367635|RALGPS2;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENST00000478871.1_1_1:178863027-178885491:+|nuORF	ENSG00000116191|ENST00000367635|RALGPS2	ENSG00000116191|ENST00000367635|RALGPS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.76385498046875	2	474.748516	947.482479	-0.17632	-8.3707E-05	3.7694	0.0017895	3.5931	0.0017058	474.7501434909689	35.32	2.642	35.364	34.167	36.809	0.04406					125	70	3	0	0	0	0.027866	1	2586	2586		51.335	0	1	587690			31064	3530	21477	21517	35568	35568					0.0066373009490234836
KHFNVSKN	8	Unmodified	_KHFNVSKN_					0	0	0		CON__Q2YDI2	CON__Q2YDI2	CON__Q2YDI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.3037414550781	2	487.264333	972.514114	0.12538	6.1094E-05	3.1525	0.0015361	3.2779	0.0015972	487.2654416143795	47.223	0.27258	47.029	46.959	47.232	-0.19387					12	6	2	0	0	0	0.027866	1	4630	4630		30.504	8.5438	1	82955		+	31065	549	21478	21518	35569	35569					0.02675722848857731
KHFPQGSTLII	11	Unmodified	_KHFPQGSTLII_					0	0	0			REV__nc|ENSG00000187609|Q8N9H8-3|EXD3	REV__nc|ENSG00000187609|Q8N9H8-3|EXD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	620.832275390625	2	620.856055	1239.69756	-0.66966	-0.00041576	3.4735	0.0021565	2.8038	0.0017408	620.8582969591278	61.688	0.19093	61.688	61.605	61.796	0					6	4	2	0	0	0	0.024774	1	7139	7139		51.193	29.507	1	54558	+		31066	27948	21479	21519	35570	35570					0.08729651839871622
KHGLLGPS	8	Unmodified	_KHGLLGPS_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.1554260253906	2	404.73742	807.460287	0.33292	0.00013474	0.075915	3.0726E-05	0.40883	0.00016547	404.7372564625677	32.879	0.45281	32.648	32.423	32.876	-0.23107					14	10	2	0	0	0	0.027866	1	2300	2300		19.36	0	1	98799			31067	838	21480	21520	35571	35571					0.04885550417145623
KHGLLGPS	8	Unmodified	_KHGLLGPS_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.15509033203125	2	404.73742	807.460287	0.9661	0.00039102	-0.32392	-0.0001311	0.64218	0.00025991	404.7369846413638	32.884	0.4061	32.692	32.457	32.863	-0.19261					18	9	3	0	0	0	0.027866	1	2315	2315		17.365	1.7287	1	114820			31068	838	21480	21520	35572	35572					0.04885550417145623
KHGSEFDL	8	Unmodified	_KHGSEFDL_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2723388671875	2	466.727249	931.439946	1.0892	0.00050837	-1.5148	-0.00070699	-0.42556	-0.00019862	466.7263915436947	36.278	0.38227	36.08	35.91	36.292	-0.19829					15	9	2	0	0	0	0.027866	1	2808	2808		7.6903	0	1	383050	+		31069	23315	21481	21521	35573	35573					-0.028516650333358484
KHHLALSV	8	Unmodified	_KHHLALSV_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000511622.5_1_5:118533586-118573027:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.771484375	2	452.771794	903.529036	0.028546	1.2925E-05	-1.5933	-0.0007214	-1.5647	-0.00070847	452.770946877923	73.761	0.58267	73.571	73.237	73.82	-0.19026					33	15	3	0	0	0	0.71833	1	8699	8699		65.803	2.4969	1	3412400			31070	8315	21482	21522	35574	35574					0.07341214716848299
KHHSLVSI	8	Unmodified	_KHHSLVSI_					0	0	0			REV__ENST00000429248.1_1_7:56707156-56718384:-|nuORF	REV__ENST00000429248.1_1_7:56707156-56718384:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.75909423828125	2	460.769252	919.52395	0.86013	0.00039632	-0.95659	-0.00044077	-0.096463	-4.4447E-05	460.7687246112685	36.867	0.39465	36.867	36.648	37.042	0					16	9	2	0	0	0	0.027866	1	2951	2951		44.531	16.277	1	126180	+		31071	32330	21483	21523	35575	35575					0.06096910854239468
KHIEELQQA	9	Unmodified	_KHIEELQQA_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2957763671875	2	548.293288	1094.57202	1.3792	0.00075621	2.0651	0.0011323	3.4443	0.0018885	548.2945708902448	19.755	1.8583	19.821	19.538	21.396	0.066195					101	37	5	0	0	0	0.96322	1	493	493		27.882	1.1893	1	5896600			31072	10237	21484	21524	35576	35576					0.028519399836113735
KHIKSHSL	8	Unmodified	_KHIKSHSL_					0	0	0			REV__nc|ENSG00000214022|Q9BWE0|REPIN1	REV__nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.79754638671875	2	475.282526	948.550499	-0.62541	-0.00029725	1.9866	0.00094418	1.3612	0.00064693	475.2826146570827	32.986	0.35748	32.821	32.72	33.077	-0.16565					11	8	2	0	0	0	0.027866	1	2329	2329		31.955	9.995	1	75314	+		31073	28765	21485	21525	35577	35577					0.07416599745567964
KHIKSHSL	8	Unmodified	_KHIKSHSL_					0	0	0			REV__nc|ENSG00000214022|Q9BWE0|REPIN1	REV__nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.282526	948.550499	0.27748	0.00013188	-1.2859	-0.00061118	-1.0085	-0.0004793	475.28155048224176	33.183	0.41464	33.183	32.941	33.356	0	0.2098	-0.0018158	NaN	31.955	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41395	+		31074	28765	21485	21525							0.07416599745567964
KHIKSHSL	8	Unmodified	_KHIKSHSL_					0	0	0			REV__nc|ENSG00000214022|Q9BWE0|REPIN1	REV__nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.282526	948.550499	0.018364	8.7282E-06	2.5328	0.0012038	2.5512	0.0012125	475.28267657503113	33.115	0.32555	32.915	32.73	33.056	-0.20019	-0.057629	0.0018142	NaN	31.955	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43851	+		31075	28765	21485	21525							0.07416599745567964
KHILGLLSVS	10	Unmodified	_KHILGLLSVS_					0	0	0			REV__ENSG00000204010|ENST00000371809|IFIT1B	REV__ENSG00000204010|ENST00000371809|IFIT1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3181762695312	2	533.834591	1065.65463	-0.33778	-0.00018032	0.08734	4.6625E-05	-0.25044	-0.00013369	533.8345959787601	33.696	0.60455	33.465	33.232	33.837	-0.23107					35	14	3	0	0	0	0.03519	1	2425	2425		66.429	15.094	1	854500	+		31076	28559	21486	21526	35578	35578					0.12442881782430959
KHKKKGTV	8	Unmodified	_KHKKKGTV_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2500305175781	2	463.300719	924.586885	-0.52736	-0.00024433	0.68994	0.00031965	0.16257	7.532E-05	463.300924907669	48.357	1.0057	48.204	47.858	48.864	-0.15301					66	28	4	0	0	0	0.027866	1	4843	4843		53.351	29.149	1	3104700			31077	4483	21487	21527	35579	35579					0.12157476642278198
KHKMARLL	8	Unmodified	_KHKMARLL_					0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7712707519531	2	498.810396	995.60624	-0.38126	-0.00019017	3.4885	0.0017401	3.1073	0.0015499	498.8125411417837	31.304	0.22688	31.119	30.945	31.172	-0.18503					6	5	2	0	0	0	0.027866	1	2067	2067		26.796	20.483	1	102430			31078	8551	21488	21528	35580	35580					0.1082610966153652
KHKPLELLLC	10	Unmodified	_KHKPLELLLC_					0	0	0		ENSG00000250510|ENST00000311268|GPR162;ENST00000535220.1_1_12:6933100-6934099:+|nuORF	ENSG00000250510|ENST00000311268|GPR162	ENSG00000250510|ENST00000311268|GPR162	MSMS	OPSCC_39_ClassI_Rep-1	1	597.3536376953125	2	597.357376	1192.7002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.7	1	103.7	103.2	104.2	0								0	0	0	0.76094	1	13305	13305		24.203	4.206	1				31079	10849	21489	21529	35581	35581					0.11155783973163125
KHKRAAKT	8	Unmodified	_KHKRAAKT_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.7688903808594	2	470.295968	938.577383	-0.29782	-0.00014006	-1.7229	-0.00081027	-2.0207	-0.00095034	470.29610063751414	35.553	0.43367	35.338	35.137	35.571	-0.21555					21	10	3	0	0	0	0.027866	1	2726	2726		12.959	0	1	107580			31080	9098	21490	21530	35582	35582					0.10563708356744428
KHKRRRRKQR	10	Unmodified	_KHKRRRRKQR_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.6472473144531	3	483.646776	1447.9185	0.025197	1.2187E-05	-0.56206	-0.00027184	-0.53686	-0.00025965	483.64642593124324	46.982	1.4851	46.713	46.526	48.011	-0.26939					176	40	5	0	0	0	1.0924	1	4542	4542		7.0187	0.69781	1	8321800			31081	18158	21491	21531	35583	35583					0.21245574450313143
KHKRRRRKQR	10	Unmodified	_KHKRRRRKQR_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.64630126953125	3	483.646776	1447.9185	-0.11273	-5.4519E-05	-0.45105	-0.00021815	-0.56377	-0.00027267	483.64647688807395	46.72	1.5498	46.526	46.345	47.895	-0.19387					182	42	5	0	0	0	1.109	1	4523	4523		15.333	5.2292	1	10437000			31082	18158	21491	21531	35584	35584					0.21245574450313143
KHLEKLLKMA	10	Unmodified	_KHLEKLLKMA_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.8718872070312	2	605.870651	1209.72675	-0.60046	-0.0003638	2.8494	0.0017264	2.2489	0.0013626	605.8721410970385	98.62	1.0824	98.616	98.307	99.389	-0.0038834					72	24	4	0	0	0	1.1197	1	12571	12571		20.947	0.10978	1	1075200	+		31083	29042	21492	21532	35585	35585					0.13027472864496303
KHLGRVNF	8	Unmodified	_KHLGRVNF_					0	0	0		CBR4|p.L104Gfs*11|1|0.05|ENSG00000145439|chr4:169006846-169006847|-/CT|frameshift_variant;nc|ENSG00000145439|Q8N4T8-2|CBR4;ENSG00000145439|ENST00000306193|CBR4	CBR4|p.L104Gfs*11|1|0.05|ENSG00000145439|chr4:169006846-169006847|-/CT|frameshift_variant	CBR4|p.L104Gfs*11|1|0.05|ENSG00000145439|chr4:169006846-169006847|-/CT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.772216796875	2	485.782693	969.550834	0.70147	0.00034076	0.022129	1.075E-05	0.7236	0.00035151	485.78250525802196	18.626	0.69246	18.47	18.148	18.84	-0.15637					16	13	2	0	0	0	0.027866	1	308	308		44.531	17.735	1	30639			31084	222	21493	21533	35586	35586					0.06484019465415258
KHLGRVNF	8	Unmodified	_KHLGRVNF_					0	0	0		CBR4|p.L104Gfs*11|1|0.05|ENSG00000145439|chr4:169006846-169006847|-/CT|frameshift_variant;nc|ENSG00000145439|Q8N4T8-2|CBR4;ENSG00000145439|ENST00000306193|CBR4	CBR4|p.L104Gfs*11|1|0.05|ENSG00000145439|chr4:169006846-169006847|-/CT|frameshift_variant	CBR4|p.L104Gfs*11|1|0.05|ENSG00000145439|chr4:169006846-169006847|-/CT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.782693	969.550834	2.844	0.0013816	-2.574	-0.0012504	0.26999	0.00013116	485.78147843625	18.726	0.49575	18.483	18.324	18.82	-0.24256	0.003776	-0.0012854	NaN	26.796	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19314			31085	222	21493	21533							0.06484019465415258
KHLKLRLINGL	11	Unmodified	_KHLKLRLINGL_					0	0	0			REV__ENST00000600765.1_1_19:51897835-51906631:+|nuORF	REV__ENST00000600765.1_1_19:51897835-51906631:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.89080810546875	3	435.622351	1303.84522	-0.085264	-3.7143E-05	2.2573	0.00098335	2.1721	0.00094621	435.6234231549414	65.257	0.56393	65.006	64.665	65.229	-0.25112					21	13	2	0	0	0	0.024782	1	7428	7428		14.086	4.8742	1	124200	+		31086	35848	21494	21534	35587	35587					0.20545588164509354
KHLKRYASV	9	Unmodified	_KHLKRYASV_					0	0	0		nc|ENSG00000188452|Q49MI3-3|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3298950195312	2	551.330008	1100.64546	2.5299	0.0013948	-2.6085	-0.0014381	-0.078559	-4.3312E-05	551.328419063258	18.725	0.59503	18.483	18.274	18.869	-0.24256					30	11	3	0	0	0	0.96322	1	328	328		27.882	2.4321	1	330930			31087	9720	21495	21535	35588	35588					0.09916533216733114
KHLLFAGEA	9	Unmodified	_KHLLFAGEA_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2784729003906	2	493.276909	984.539266	-0.50596	-0.00024958	3.7492	0.0018494	3.2433	0.0015998	493.27865839372055	20.663	1.3767	20.44	20.216	21.593	-0.22344					51	27	2	0	0	0	0.72875	1	543	543		44.117	3.3386	1	584800	+		31088	23084	21496	21536	35589	35589					0.04637777651419128
KHLLFTFW	8	Unmodified	_KHLLFTFW_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3170166015625	2	546.30547	1090.59639	-1.6543	-0.00090376	2.7469	0.0015006	1.0926	0.00059687	546.3073658255481	91.643	0.25963	91.494	91.396	91.655	-0.1487					6	5	2	0	0	0	0.027866	1	11242	11242		24.203	0	1	50562	+		31089	23162	21497	21537	35590	35590					0.0547124492779858
KHLPPGAR	8	Unmodified	_KHLPPGAR_					0	0	0			REV__nc|ENSG00000185252|Q16587-4|ZNF74	REV__nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.2636413574219	2	438.264136	874.51372	-0.59613	-0.00026126	-0.38446	-0.00016849	-0.98059	-0.00042976	438.2637601024111	40.82	1.1707	40.684	40.381	41.552	-0.13554					61	30	3	0	0	0	1.0574	1	3578	3578		24.203	2.2429	1	1804200	+		31090	33313	21498	21538	35591	35591					0.07144347919654592
KHLPPGAR	8	Unmodified	_KHLPPGAR_					0	0	0			REV__nc|ENSG00000185252|Q16587-4|ZNF74	REV__nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.2632751464844	2	438.264136	874.51372	-0.442	-0.00019371	-0.83211	-0.00036468	-1.2741	-0.00055839	438.26364621628903	41.031	1.8467	40.801	40.485	42.331	-0.23029					96	49	4	0	0	0	1.0574	1	3582	3582		23.042	1.3402	1	1620600	+		31091	33313	21498	21538	35592	35592					0.07144347919654592
KHLTFISPK	9	Unmodified	_KHLTFISPK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.328125	2	535.821484	1069.62842	-0.92982	-0.00049822	-3.0027	-0.0016089	-3.9325	-0.0021071	535.8197240878573	43.29	0.97321	43.151	42.846	43.82	-0.13929					44	26	3	0	0	0	0.024374	1	4132	4132		40.778	3.6191	1	355280	+		31092	28029	21499	21539	35593	35593					0.09638612610933706
KHLTFISPK	9	Unmodified	_KHLTFISPK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.821484	1069.62842	-0.28425	-0.00015231	-3.2386	-0.0017353	-3.5228	-0.0018876	535.8193528785081	43.14	0.90803	43.171	42.939	43.847	0.030823	0.097622	0.00059667	NaN	19.104	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281110	+		31093	28029	21499	21539							0.09638612610933706
KHLTFISPK	9	Unmodified	_KHLTFISPK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.821484	1069.62842	-0.34273	-0.00018364	-5.3294	-0.0028556	-5.6721	-0.0030392	536.3204092390419	43.01	0.37762	42.897	42.693	43.071	-0.11253	-0.1758	-0.0016439	NaN	19.104	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290740	+		31094	28029	21499	21539							0.09638612610933706
KHLTGTLI	8	Unmodified	_KHLTGTLI_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7145080566406	2	441.774003	881.533452	-0.081304	-3.5918E-05	1.1794	0.00052101	1.0981	0.00048509	441.7741418843452	31.076	0.49035	31.145	30.955	31.445	0.068962					17	11	2	0	0	0	0.027866	1	1986	1986		24.203	11.996	1	230930			31095	4386	21500	21540	35594	35594					0.08794679139771233
KHMPPLKPK	9	Unmodified	_KHMPPLKPK_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3267822265625	2	538.325879	1074.63721	-0.12202	-6.5684E-05	2.1504	0.0011576	2.0284	0.0010919	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	0.72875	1	12746	12746		44.117	10.195	1	22543000			31096	4074	21501	21541	35595	35595					0.10287262975771228
KHMPPLKPK	9	Unmodified	_KHMPPLKPK_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3272705078125	2	538.325879	1074.63721	-0.46158	-0.00024848	2.7303	0.0014698	2.2687	0.0012213	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.85329	1	12779	12779		35.618	2.8059	1	22988000			31097	4074	21501	21541	35596	35596					0.10287262975771228
KHMPPLKPK	9	Unmodified	_KHMPPLKPK_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3263549804688	2	538.325879	1074.63721	-0.33931	-0.00018266	2.5339	0.001364	2.1946	0.0011814	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	0.75397	1	12778	12778		42.396	15.703	1	22353000			31098	4074	21501	21541	35597	35597					0.10287262975771228
KHMPPLKPK	9	Unmodified	_KHMPPLKPK_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3279418945312	2	538.325879	1074.63721	0.47679	0.00025667	1.7267	0.00092954	2.2035	0.0011862	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	0.85329	2	12430	12430;12468		35.618	7.736	1	21461000			31099	4074	21501	21541	35598;35599	35598					0.10287262975771228
KHNKRAPARHA	11	Unmodified	_KHNKRAPARHA_					0	0	0			REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.2509765625	3	429.2498	1284.72757	-0.33811	-0.00014513	2.3868	0.0010245	2.0487	0.00087939	429.2508617214527	56.229	1.3293	56.229	55.858	57.187	0					120	37	5	0	0	0	1.0371	1	6261	6261		28.577	1.827	1	11006000	+		31100	37220	21502	21542	35600	35600					0.0965944834840684
KHNKRAPARHA	11	Unmodified	_KHNKRAPARHA_					0	0	0			REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	429.2498	1284.72757	-0.33811	-0.00014513	2.3868	0.0010245	2.0487	0.00087939	429.2508617214527	56.229	1.3293	56.229	55.858	57.187	0	0.055759	-8.1204E-06	NaN	28.577	120	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11006000	+		31101	37220	21502	21542							0.0965944834840684
KHNKRAPARHA	11	Unmodified	_KHNKRAPARHA_					0	0	0			REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	429.2498	1284.72757	-0.42776	-0.00018362	2.4215	0.0010394	1.9937	0.00085581	429.2508601338086	56.365	1.6601	56.205	55.738	57.398	-0.15994	0.031315	3.658E-05	NaN	28.577	131	45	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9518600	+		31102	37220	21502	21542							0.0965944834840684
KHNKRAPARHA	11	Unmodified	_KHNKRAPARHA_					0	0	0			REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	REV__nc|ENSG00000286175|A0A494C0N9|FAM246B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	429.2498	1284.72757	-0.38306	-0.00016443	2.3539	0.0010104	1.9708	0.00084597	429.2508460502423	55.989	1.3465	56.086	55.634	56.981	0.097893	-0.087074	-5.051E-05	NaN	28.577	115	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10929000	+		31103	37220	21502	21542							0.0965944834840684
KHNLHSWVLYF	11	Unmodified	_KHNLHSWVLYF_					0	0	0		GSAP|p.H664Y|1|0.38|ENSG00000186088|chr7:77321337-77321337|G/A|missense_variant	GSAP|p.H664Y|1|0.38|ENSG00000186088|chr7:77321337-77321337|G/A|missense_variant	GSAP|p.H664Y|1|0.38|ENSG00000186088|chr7:77321337-77321337|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.283203125	3	481.922578	1442.7459	1.206	0.0005812	-3.5138	-0.0016934	-2.3078	-0.0011122	482.25564474830713	51.593	0.75885	51.409	51.019	51.778	-0.18404					35	19	3	0	0	0	0.02477	1	5340	5340		12.433	0	1	225520			31104	17700	21503	21543	35601	35601					0.04224145479724939
KHPSVKDDS	9	Unmodified	_KHPSVKDDS_					0	0	0		ENSG00000119509|ENST00000262457|INVS;nc|ENSG00000119509|Q9Y283-2|INVS	ENSG00000119509|ENST00000262457|INVS	ENSG00000119509|ENST00000262457|INVS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7771301269531	2	506.756538	1011.49852	0.67203	0.00034055	-1.8158	-0.00092016	-1.1438	-0.00057961	507.25617740859707	51.136	0.228	50.955	50.834	51.062	-0.18071					8	5	2	0	0	0	0.024418	1	5241	5241		45.972	15.469	1	51965			31105	3741	21504	21544	35602	35602					-0.006766084588548438
KHPVRVIK	8	Unmodified	_KHPVRVIK_					0	0	0			REV__nc|ENSG00000157426|Q4L235-4|AASDH	REV__nc|ENSG00000157426|Q4L235-4|AASDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.791259765625	2	488.824361	975.634169	0.057235	2.7978E-05	0.22465	0.00010981	0.28188	0.00013779	488.8244153614933	22.438	0.27211	22.249	22.102	22.374	-0.18894					7	5	2	0	0	0	0.027866	1	793	793		25.45	12.491	1	22473	+		31106	36813	21505	21545	35603	35603					0.14537755913272576
KHQPDHPDL	9	Unmodified	_KHQPDHPDL_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB;NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2980346679688	2	543.76998	1085.52541	-0.14235	-7.7407E-05	3.5762	0.0019446	3.4338	0.0018672	543.7711903147427	23.781	0.91066	23.579	23.279	24.19	-0.20193					33	20	3	0	0	0	0.024427	1	1032	1032		42.396	9.5837	1	70961			31107	8023	21506	21546	35604	35604					-0.013934998476770488
KHQQDWLV	8	Unmodified	_KHQQDWLV_					0	0	0			REV__ENST00000528996.1_1_11:57374185-57382051:+|nuORF	REV__ENST00000528996.1_1_11:57374185-57382051:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.3009643554688	2	527.277441	1052.54033	0.079425	4.1879E-05	2.6906	0.0014187	2.77	0.0014606	527.2790518344916	23.091	0.9773	22.889	22.546	23.523	-0.20193					34	21	2	0	0	0	0.027866	1	890	890		42.396	0	1	128590	+		31108	24656	21507	21547	35605	35605					0.016159920203108413
KHQQLIEDL	9	Unmodified	_KHQQLIEDL_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3089599609375	2	562.308938	1122.60332	0.16549	9.3058E-05	-0.31553	-0.00017743	-0.15004	-8.4368E-05	562.308912493928	69.403	1.1227	69.11	68.713	69.836	-0.29291					91	28	4	0	0	0	0.35646	1	8310	8310		68.787	0	1	6519400	+		31109	28189	21508	21548	35606	35606					0.04692513017721467
KHQQLVLA	8	Unmodified	_KHQQLVLA_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7903137207031	2	468.784902	935.55525	-0.13971	-6.5492E-05	2.5815	0.0012102	2.4418	0.0011447	468.78602247961044	27.425	0.29533	27.412	27.205	27.5	-0.012983					12	7	2	0	0	0	0.027866	1	1484	1484		20.482	1.1219	1	261020			31110	6997	21509	21549	35607	35607					0.08489483888320137
KHRLTAKS	8	Unmodified	_KHRLTAKS_					0	0	0			REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.7878112792969	2	470.787976	939.561398	-0.40234	-0.00018942	-0.52319	-0.00024631	-0.92554	-0.00043573	470.78778156790446	23.768	0.82284	23.707	23.428	24.251	-0.06086					59	18	5	0	0	0	0.97794	1	961	961		40.778	0	1	12702000	+		31111	35417	21510	21550	35608	35608					0.0892000211983941
KHRPEGPK	8	Unmodified	_KHRPEGPK_					0	0	0		ENSG00000180720|ENST00000682254|CHRM4	ENSG00000180720|ENST00000682254|CHRM4	ENSG00000180720|ENST00000682254|CHRM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.773681640625	2	474.772326	947.530098	0.66163	0.00031412	2.0346	0.00096597	2.6962	0.0012801	474.77321307172184	99.111	1.2212	99.122	98.522	99.743	0.010239					65	27	3	0	0	0	1.0106	1	12678	12678		35.618	2.8059	1	2003000			31112	8992	21511	21551	35609	35609					0.05423429085760745
KHRRKAPGA	9	Unmodified	_KHRRKAPGA_					0	0	0		ENST00000584522.1_1_17:27893363-27893582:+|nuORF	ENST00000584522.1_1_17:27893363-27893582:+|nuORF	ENST00000584522.1_1_17:27893363-27893582:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.789794921875	2	510.812316	1019.61008	-0.17639	-9.0103E-05	1.5581	0.00079591	1.3817	0.00070581	510.81284270578016	41.475	0.49164	41.339	41.06	41.552	-0.13554					27	12	3	0	0	0	0.024412	1	3648	3648		24.203	0	1	407270			31113	17207	21512	21552	35610	35610					0.10105915479596206
KHSFLTAP	8	Unmodified	_KHSFLTAP_					0	0	0			REV__nc|ENSG00000081665|Q5JVG8-2|ZNF506	REV__nc|ENSG00000081665|Q5JVG8-2|ZNF506	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2743835449219	2	450.750527	899.486502	-0.17574	-7.9215E-05	1.7581	0.00079247	1.5824	0.00071325	450.7507158506583	92.334	0.23592	92.326	92.198	92.434	-0.0082932					9	5	2	0	0	0	0.027866	1	11685	11685		40.573	0	1	55297	+		31114	20682	21513	21553	35611	35611					0.0327381958860542
KHSKKGPR	8	Unmodified	_KHSKKGPR_					0	0	0		ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2651062011719	2	469.288143	936.561733	-0.25243	-0.00011846	3.3813	0.0015868	3.1289	0.0014683	469.28961268097265	33.597	0.50793	33.397	33.209	33.717	-0.20019					20	12	2	0	0	0	0.027866	1	2389	2389		23.042	0	1	226960			31115	5418	21514	21554	35612	35612					0.09091421839707436
KHSKKGPR	8	Unmodified	_KHSKKGPR_					0	0	0		ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.288143	936.561733	0.015822	7.425E-06	3.228	0.0015149	3.2438	0.0015223	469.2893963313634	33.65	0.44114	33.419	33.232	33.673	-0.23107	0.0065947	-0.00045376	NaN	29.15	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236010			31116	5418	21514	21554							0.09091421839707436
KHSKKGTHIK	10	Unmodified	_KHSKKGTHIK_					0	0	0			REV__ENSG00000165512|ENST00000298299|ZNF22	REV__ENSG00000165512|ENST00000298299|ZNF22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3521728515625	2	582.354014	1162.69348	0.23222	0.00013523	-1.1864	-0.0006909	-0.95417	-0.00055567	582.3532009393155	102.38	1.4655	102.25	101.9	103.36	-0.12931					112	34	7	0	0	0	1.1246	1	12683	12683		23.523	0.94304	1	8525700	+		31117	25897	21515	21555	35613	35613					0.11863607136797327
KHSRLTEKLLE	11	Unmodified	_KHSRLTEKLLE_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2674560546875	3	451.933143	1352.7776	0.95574	0.00043193	-1.8211	-0.00082301	-0.86535	-0.00039108	451.93215521600763	97.035	2.3592	96.912	95.552	97.912	-0.12368					183	54	5	0	0	0	1.0855	1	12119	12119		15.337	1.2515	1	477030			31118	10619	21516	21556	35614	35614					0.11532093443042868
KHSSEVDIN	9	Unmodified	_KHSSEVDIN_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7915649414062	2	514.753995	1027.49344	-0.9679	-0.00049823	3.9101	0.0020128	2.9422	0.0015145	514.7557774894611	25.535	0.78379	25.535	25.173	25.957	0					28	18	2	0	0	0	0.024511	1	1232	1232		32.812	17.171	1	99905			31119	4666	21517	21557	35615	35615					-0.01920912321452306
KHTEELDSHL	10	Unmodified	_KHTEELDSHL_					0	0	0		ZNF462-RAD23B|1|fusion;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462;ENST00000482115.1_1_9:109734425-109757827:+|nuORF	ZNF462-RAD23B|1|fusion	ZNF462-RAD23B|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.8612060546875	3	403.535048	1207.58332	1.9837	0.00080051	0.96478	0.00038932	2.9485	0.0011898	403.5360219972313	23.635	0.21815	23.711	23.604	23.822	0.076241					6	4	2	0	0	0	0.03519	1	914	914		36.447	22.939	1	47365			31120	38192	21518	21558	35616	35616					-0.012172827129006691
KHTPAYLK	8	Unmodified	_KHTPAYLK_					0	0	0			REV__GOLIM4|p.P574Qfs*24|1|0.52|ENSG00000173905|chr3:168024998-168024998|G/-|frameshift_variant	REV__GOLIM4|p.P574Qfs*24|1|0.52|ENSG00000173905|chr3:168024998-168024998|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.28125	2	479.279452	956.544351	-0.050895	-2.4393E-05	-3.2747	-0.0015695	-3.3256	-0.0015939	479.2776228774827	96.341	2.321	96.184	95.4	97.721	-0.15646					118	52	5	0	0	0	1.0239	1	11863	11863		33.516	3.0119	1	1642300	+		31121	26819	21519	21559	35617	35617					0.06434081514032641
KHTRLFEGLL	10	Unmodified	_KHTRLFEGLL_					0	0	0			REV__ENSG00000096088|ENST00000373025|PGC	REV__ENSG00000096088|ENST00000373025|PGC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.23919677734375	3	405.239907	1212.69789	0.13612	5.516E-05	-3.3125	-0.0013424	-3.1764	-0.0012872	405.23864125404083	27.134	1.1706	27.121	26.786	27.957	-0.012983					102	30	5	0	0	0	0.93809	1	1472	1472		51.528	0.33506	1	15084000	+		31122	20982	21520	21560	35618	35618					0.10005071559703538
KHVDERILP	9	Unmodified	_KHVDERILP_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.78564453125	2	553.819473	1105.62439	-0.43347	-0.00024006	-4.0516	-0.0022439	-4.4851	-0.0024839	553.8158256708814	43.058	0.7259	42.918	42.558	43.284	-0.13929					34	19	3	0	0	0	0.024436	1	4043	4043		47.916	18.766	1	795640	+		31123	22530	21521	21561	35619	35619					0.07580523117235316
KHVDERILP	9	Unmodified	_KHVDERILP_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7852783203125	2	553.819473	1105.62439	0.28304	0.00015676	-2.7307	-0.0015123	-2.4476	-0.0013556	553.8177196752457	42.949	0.43784	42.98	42.902	43.34	0.030827					18	11	2	0	0	0	0.024354	1	3990	3990		47.916	3.7988	1	992600	+		31124	22530	21521	21561	35620	35620					0.07580523117235316
KHVDERILP	9	Unmodified	_KHVDERILP_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.819473	1105.62439	-0.17227	-9.5408E-05	-10.137	-0.0056142	-10.31	-0.0057097	553.8136674555496	42.959	0.35357	42.847	42.538	42.891	-0.11253	-0.036136	-0.003787	NaN	63.306	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125370	+		31125	22530	21521	21561							0.07580523117235316
KHVDERILP	9	Unmodified	_KHVDERILP_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.819473	1105.62439	-0.30608	-0.00016951	-9.0741	-0.0050254	-9.3801	-0.0051949	554.3162388687118	43.075	0.3562	42.838	42.561	42.917	-0.23736	-0.045291	-0.0026093	NaN	63.306	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101060	+		31126	22530	21521	21561							0.07580523117235316
KHVDERILP	9	Unmodified	_KHVDERILP_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.819473	1105.62439	-0.76163	-0.00042181	-9.1605	-0.0050733	-9.9222	-0.0054951	554.3160523689287	43.097	0.4253	42.871	42.636	43.061	-0.22597	-0.011866	-0.002705	NaN	63.306	11	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142830	+		31127	22530	21521	21561							0.07580523117235316
KHVDPLHK	8	Unmodified	_KHVDPLHK_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.57061767578125	2	487.282526	972.550499	0.1577	7.6844E-05	3.5845	0.0017467	3.7422	0.0018235	487.2837718548217	18.292	0.34699	18.089	17.965	18.312	-0.20371					9	6	2	0	0	0	0.027866	1	283	283		12.207	0	1	19370	+		31128	26510	21522	21562	35621	35621					0.063125997455586
KHVELGLIRNL	11	Unmodified	_KHVELGLIRNL_					0	0	0			REV__ENST00000587673.5_1_19:1109414-1111598:-|nuORF	REV__ENST00000587673.5_1_19:1109414-1111598:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.5303649902344	3	431.266345	1290.7772	0.061802	2.6653E-05	1.7821	0.00076857	1.8439	0.00079522	431.2676876091378	24.014	0.90079	23.834	23.477	24.378	-0.17989					37	20	4	0	0	0	0.02477	1	957	957		8.4073	0	1	72908	+		31129	20295	21523	21563	35622	35622					0.1434471851384842
KHVIVQRIL	9	Unmodified	_KHVIVQRIL_					0	0	0		ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENST00000392253.2_1_2:202276919-202277543:-|nuORF	ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3042602539062	2	553.36385	1104.71315	-0.3988	-0.00022068	-1.8105	-0.0010019	-2.2093	-0.0012225	553.3626246338829	22.472	0.37495	22.472	22.245	22.619	0					10	7	2	0	0	0	0.024535	1	764	764		18.324	0	1	20884			31130	13410	21524	21564	35623	35623					0.1649798314756481
KHVKALTN	8	Unmodified	_KHVKALTN_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40;ENST00000460806.1_1_3:5021979-5023208:+|nuORF	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.766845703125	2	455.777077	909.5396	0.022015	1.0034E-05	0.69441	0.0003165	0.71643	0.00032653	455.7770377515623	23.629	1.0449	23.705	23.272	24.317	0.076241					61	23	4	0	0	0	0.027866	1	862	862		27.882	3.6795	1	255840			31131	4754	21525	21565	35624	35624					0.08121197371258404
KHVKGLLN	8	Unmodified	_KHVKGLLN_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7352294921875	2	454.787444	907.560336	-0.28994	-0.00013186	-1.4927	-0.00067885	-1.7826	-0.00081071	454.7867028193499	32.258	0.2591	32.101	31.904	32.163	-0.15772					7	5	2	0	0	0	0.027866	1	2187	2187		18.324	0	1	29698			31132	5919	21526	21566	35625	35625					0.10285787750945019
KHVKMHQR	8	Oxidation (M)	_KHVKM(Oxidation (M))HQR_		KHVKM(1)HQR		KHVKM(42)HQR	0	0	1			REV__ENSG00000165512|ENST00000298299|ZNF22	REV__ENSG00000165512|ENST00000298299|ZNF22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2980346679688	2	540.298185	1078.58182	-1.496	-0.00080829	1.2193	0.00065877	-0.27673	-0.00014952	540.2987705790721	21.734	1.4296	21.806	21.546	22.975	0.071487					69	29	4	0	0	0	0.96719	1	658	658		42.474	10.52	1	1298200	+		31133	25897	21527	21567	35626	35626		766			0.04566849508000814
KHVLGAIF	8	Unmodified	_KHVLGAIF_					0	0	0		ENSG00000171004|ENST00000370833|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.2318115234375	2	442.771263	883.527973	-0.21976	-9.7304E-05	0.099699	4.4144E-05	-0.12006	-5.316E-05	442.77117597533646	46.938	0.51605	46.841	46.645	47.161	-0.096649					21	13	2	0	0	0	0.027866	1	4595	4595		35.201	14.719	1	296840			31134	8102	21528	21568	35627	35627					0.08155000347949226
KHVLGAIF	8	Unmodified	_KHVLGAIF_					0	0	0		ENSG00000171004|ENST00000370833|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.231689453125	2	442.771263	883.527973	0.096219	4.2603E-05	-0.035023	-1.5507E-05	0.061197	2.7096E-05	442.77107045894644	47.264	0.54467	46.995	46.73	47.274	-0.26939					29	14	3	0	0	0	0.027866	1	4618	4618		35.201	14.719	1	256170			31135	8102	21528	21568	35628	35628					0.08155000347949226
KHVTRLFKL	9	Unmodified	_KHVTRLFKL_					0	0	0			REV__ENST00000163416.6_1_14:93305818-93305962:+|nuORF	REV__ENST00000163416.6_1_14:93305818-93305962:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.310302734375	2	571.36385	1140.71315	0.54437	0.00031103	-2.5453	-0.0014543	-2.001	-0.0011433	571.8637830470318	74.596	0.2455	74.413	74.309	74.555	-0.18279					7	5	2	0	0	0	0.024527	1	8798	8798		31.53	11.533	1	57730	+		31136	29274	21529	21569	35629	35629					0.14841983147562132
KHWLLSFS	8	Unmodified	_KHWLLSFS_					0	0	0		ENST00000515803.5_1_5:16711340-16738347:-|nuORF	ENST00000515803.5_1_5:16711340-16738347:-|nuORF	ENST00000515803.5_1_5:16711340-16738347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3050842285156	2	509.279452	1016.54435	0.36678	0.00018679	-0.51971	-0.00026468	-0.15293	-7.7886E-05	509.7793400820612	22.264	0.51253	22.075	21.723	22.236	-0.18894					16	10	2	0	0	0	0.027866	1	770	770		42.474	3.6683	1	75644			31137	15910	21530	21570	35630	35630					0.036740815140547056
KHYIVAGVAL	10	Unmodified	_KHYIVAGVAL_					0	0	0			REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF	REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.767822265625	2	535.821484	1069.62842	-0.3201	-0.00017152	-3.6522	-0.0019569	-3.9723	-0.0021284	535.8193648083079	37.019	0.79813	36.956	36.47	37.268	-0.063389					51	20	3	0	0	0	0.03519	1	3017	3017		38.806	3.1879	1	693420	+		31138	23278	21531	21571	35631	35631					0.09638612610933706
KHYWYTSWPD	10	Unmodified	_KHYWYTSWPD_					0	0	0		nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;ENST00000549107.5_1_12:71032966-71078579:-|nuORF;ENST00000551219.5_1_12:71033442-71056379:-|nuORF;ENST00000547752.5_1_12:71032966-71054913:-|nuORF;ENST00000537619.6_1_12:71032966-71058115:-|nuORF	nc|ENSG00000153233|Q15256-5|PTPRR	nc|ENSG00000153233|Q15256-5|PTPRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.7510681152344	3	461.543655	1381.60914	-0.21072	-9.7257E-05	3.6801	0.0016985	3.4694	0.0016013	461.54522610356213	34.2	0.47729	34.2	33.894	34.371	0					29	11	3	0	0	0	0.03519	1	2540	2540		15.333	0	1	540730			31139	6332	21532	21572	35632	35632					-0.0664038847064603
KHYWYTSWPD	10	Unmodified	_KHYWYTSWPD_					0	0	0		nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;ENST00000549107.5_1_12:71032966-71078579:-|nuORF;ENST00000551219.5_1_12:71033442-71056379:-|nuORF;ENST00000547752.5_1_12:71032966-71054913:-|nuORF;ENST00000537619.6_1_12:71032966-71058115:-|nuORF	nc|ENSG00000153233|Q15256-5|PTPRR	nc|ENSG00000153233|Q15256-5|PTPRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7508239746094	3	461.543655	1381.60914	-0.026261	-1.212E-05	3.3458	0.0015442	3.3195	0.0015321	461.5457498954665	33.994	0.81466	33.989	33.599	34.414	-0.0045624					52	20	4	0	0	0	0.03519	1	2509	2509		20.03	0	1	561560			31140	6332	21532	21572	35633	35633					-0.0664038847064603
KHYWYTSWPD	10	Unmodified	_KHYWYTSWPD_					0	0	0		nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;ENST00000549107.5_1_12:71032966-71078579:-|nuORF;ENST00000551219.5_1_12:71033442-71056379:-|nuORF;ENST00000547752.5_1_12:71032966-71054913:-|nuORF;ENST00000537619.6_1_12:71032966-71058115:-|nuORF	nc|ENSG00000153233|Q15256-5|PTPRR	nc|ENSG00000153233|Q15256-5|PTPRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.75103759765625	3	461.543655	1381.60914	-0.0051969	-2.3986E-06	3.1654	0.001461	3.1602	0.0014586	461.5457276174875	34.018	0.91222	34.068	33.687	34.599	0.050255					49	22	3	0	0	0	0.03519	1	2458	2458		26.063	14.131	1	506750			31141	6332	21532	21572	35634	35634					-0.0664038847064603
KIAAAHVEL	9	Unmodified	_KIAAAHVEL_					0	0	0			REV__ENSG00000142224|ENST00000659997|IL19	REV__ENSG00000142224|ENST00000659997|IL19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2667541503906	2	476.284734	950.554916	0.86273	0.0004109	-0.82648	-0.00039364	0.036251	1.7266E-05	476.28428506876855	54.617	0.4106	54.411	54.237	54.648	-0.20613					15	10	2	0	0	0	0.024436	1	5815	5815		38.806	0	1	98998	+		31142	19319	21533	21573	35635	35635					0.07766064168458797
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	ENSG00000087586|ENST00000395915|AURKA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.76873779296875	2	511.768917	1021.52328	-0.51602	-0.00026408	0.34243	0.00017525	-0.17359	-8.8837E-05	511.76883186138593	68.784	1.6599	68.784	68.295	69.954	0					111	42	5	0	0	0	0.013065	3	8266	8248;8266;8293		171.53	89.291	1	13566000			31143	1854;8858	21534	21574	35636;35637;35638	35637					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	ENSG00000087586|ENST00000395915|AURKA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.7684631347656	2	511.768917	1021.52328	0.24499	0.00012538	-0.5251	-0.00026873	-0.28011	-0.00014335	511.76844425861395	69.123	1.4804	68.83	68.48	69.961	-0.29267					114	37	6	0	0	0	0.014454	4	8273	8256;8273;8285;8305		185.55	94.949	1	12236000			31144	1854;8858	21534	21574	35639;35640;35641;35642	35640					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	ENSG00000087586|ENST00000395915|AURKA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.7685852050781	2	511.768917	1021.52328	-0.37119	-0.00018996	0.31342	0.0001604	-0.057774	-2.9567E-05	511.7687901040828	68.836	1.4633	68.852	68.532	69.995	0.015121					98	37	4	0	0	0	0.015752	3	8220	8179;8189;8220		200.16	104.34	1	11165000			31145	1854;8858	21534	21574	35643;35644;35645	35645					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	ENSG00000087586|ENST00000395915|AURKA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.76861572265625	2	511.768917	1021.52328	-0.83656	-0.00042812	0.39734	0.00020335	-0.43922	-0.00022478	511.7690551496712	69.113	1.0331	68.851	68.466	69.499	-0.26165					68	23	4	0	0	0	0.015752	2	8000	7992;8000		158.07	61.884	1	3666500			31146	1854;8858	21534	21574	35646;35647	35647					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	ENSG00000087586|ENST00000395915|AURKA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.76861572265625	2	511.768917	1021.52328	0.14574	7.4585E-05	-0.67174	-0.00034377	-0.526	-0.00026919	511.7684741342367	69.068	1.3946	68.825	68.43	69.825	-0.24277					78	33	4	0	0	0	0.014454	3	7997	7993;7997;8007		185.55	89.735	1	3739300			31147	1854;8858	21534	21574	35648;35649;35650	35649					0.013380714145228012
KIADFGWSV	9	Unmodified	_KIADFGWSV_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	ENSG00000087586|ENST00000395915|AURKA;nc|ENSG00000178999|Q96GD4-4|AURKB	ENSG00000087586|ENST00000395915|AURKA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7685852050781	2	511.768917	1021.52328	-0.14727	-7.5369E-05	-0.39065	-0.00019992	-0.53792	-0.00027529	511.76861459626303	69.035	1.4411	68.804	68.48	69.921	-0.23048					73	34	4	0	0	0	0.015752	2	7990	7982;7990		158.07	72.914	1	3495800			31148	1854;8858	21534	21574	35651;35652	35652					0.013380714145228012
KIADYLLQ	8	Unmodified	_KIADYLLQ_					0	0	0			REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2772521972656	2	482.279118	962.543683	-0.3553	-0.00017135	-3.9959	-0.0019272	-4.3512	-0.0020985	482.2771442889716	24.675	0.78823	24.675	24.385	25.173	0					44	17	4	0	0	0	0.47727	1	1095	1095		87.696	4.946	1	1684900	+		31149	23678	21535	21575	35653	35653					0.06091242074330694
KIAKAKKH	8	Unmodified	_KIAKAKKH_					0	0	0			REV__ENSG00000168329|ENST00000399220|CX3CR1	REV__ENSG00000168329|ENST00000399220|CX3CR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7846984863281	2	462.311087	922.60762	-0.87518	-0.00040461	3.2597	0.001507	2.3845	0.0011024	462.3115450200344	43.643	0.20827	43.424	43.282	43.49	-0.21939					8	5	2	0	0	0	0.027866	1	4000	4000		24.203	11.996	1	45341	+		31150	26248	21536	21576	35654	35654					0.14322067021942075
KIAKKNAAE	9	Unmodified	_KIAKKNAAE_					0	0	0		nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;nc|ENSG00000040341|Q9NUL3-4|STAU2;nc|ENSG00000040341|Q9NUL3-6|STAU2;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;ENSG00000040341|ENST00000524300|STAU2	nc|ENSG00000040341|Q9NUL3-3|STAU2	nc|ENSG00000040341|Q9NUL3-3|STAU2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7909851074219	2	486.795466	971.57638	-0.66583	-0.00032412	-3.0532	-0.0014863	-3.719	-0.0018104	486.7938925855808	83.352	0.85605	83.352	82.793	83.649	0					31	19	2	0	0	0	0.024261	1	10443	10443		37.812	0	1	377730			31151	18043	21537	21577	35655	35655					0.08945449197176458
KIAKSRIAEHR	11	Unmodified	_KIAKSRIAEHR_					0	0	0		ENST00000448276.6_1_17:61919994-61920252:-|nuORF	ENST00000448276.6_1_17:61919994-61920252:-|nuORF	ENST00000448276.6_1_17:61919994-61920252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.9339599609375	3	436.933477	1307.7786	0.042733	1.8672E-05	1.2816	0.00055999	1.3244	0.00057866	436.9338403733163	20.466	3.1397	20.298	20.002	23.141	-0.16774					157	65	4	0	0	0	1.0408	1	557	557		27.644	0	1	862240			31152	14480	21538	21578	35656	35656					0.13702352602581414
KIALEKNF	8	Unmodified	_KIALEKNF_					0	0	0		ENST00000491553.1_1_4:38016582-38022367:+|nuORF;nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1	ENST00000491553.1_1_4:38016582-38022367:+|nuORF	ENST00000491553.1_1_4:38016582-38022367:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7613525390625	2	481.78711	961.559667	0.46009	0.00022167	-2.7242	-0.0013125	-2.2641	-0.0010908	481.78597102292053	41.776	0.1782	41.776	41.615	41.793	0					5	4	2	0	0	0	0.027866	1	3769	3769		29.15	10.825	1	75288			31153	1321	21539	21579	35657	35657					0.07734948311235712
KIALHKSRL	9	Unmodified	_KIALHKSRL_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2470703125	2	533.3482	1064.68185	-1.1585	-0.00061786	1.0198	0.00054389	-0.13868	-7.3964E-05	533.3485590655209	34.537	0.65387	34.588	34.329	34.983	0.050255					27	16	3	0	0	0	0.024374	1	2507	2507		58.782	31.986	1	133310	+		31154	21125	21540	21580	35658	35658					0.15209410113470767
KIALRLQQ	8	Unmodified	_KIALRLQQ_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2716979980469	2	485.313826	968.613099	-0.73244	-0.00035546	0.57227	0.00027773	-0.16017	-7.7732E-05	485.31374165794426	32.74	0.52384	32.74	32.494	33.018	0					24	13	3	0	0	0	0.027866	1	2313	2313		40.573	10.069	1	129460	+		31155	20709	21541	21581	35659	35659					0.12753745813745354
KIANAKPNKT	10	Unmodified	_KIANAKPNKT_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|63|3|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|63|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.306396484375	2	542.827298	1083.64004	-0.9932	-0.00053913	0.3682	0.00019987	-0.625	-0.00033927	542.8274182035708	36.46	0.54222	36.46	36.263	36.805	0					25	14	3	0	0	0	0.03519	1	2912	2912		45.972	18.09	1	236300	+		31156	36282	21542	21582	35660	35660					0.10156809634258934
KIANAKPNKT	10	Unmodified	_KIANAKPNKT_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|63|3|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|63|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3064575195312	2	542.827298	1083.64004	-1.2222	-0.00066342	1.0146	0.00055073	-0.2076	-0.00011269	542.8277101289337	36.423	0.5283	36.461	36.234	36.762	0.038044					28	14	3	0	0	0	0.03519	1	2846	2846		31.53	3.6476	1	283310	+		31157	36282	21542	21582	35661	35661					0.10156809634258934
KIANKNSLV	9	Unmodified	_KIANKNSLV_					0	0	0		MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.78533935546875	2	493.803291	985.59203	-0.019631	-9.6939E-06	-2.895	-0.0014295	-2.9146	-0.0014392	493.80290274918843	57.183	0.47284	56.959	56.7	57.173	-0.2248					21	12	3	0	0	0	0.022587	1	6184	6184		84.916	0	1	114470			31158	17966	21543	21583	35662	35662					0.09865735714242874
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2898864746094	2	491.290017	980.565481	-0.57676	-0.00028336	-0.15815	-7.7699E-05	-0.73491	-0.00036106	491.2898870922152	44.742	1.4595	44.742	44.12	45.58	0					74	42	3	0	0	0	0.053401	1	4305	4305		127.46	6.8407	1	6480900			31159	2483	21544	21584	35663	35663					0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.29022216796875	2	491.290017	980.565481	-0.94428	-0.00046391	0.26844	0.00013188	-0.67584	-0.00033203	491.29010854393937	44.916	1.2926	44.768	44.222	45.515	-0.1488					64	37	3	0	0	0	0.03201	2	4294	4294;4317		139.97	14.156	1	6835500			31160	2483	21544	21584	35664;35665	35664					0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.29010009765625	2	491.290017	980.565481	-0.41902	-0.00020586	-0.22992	-0.00011296	-0.64894	-0.00031882	491.28983347070357	44.772	1.5008	44.809	44.072	45.573	0.0369					77	43	4	0	0	0	0.053401	2	4248	4248;4260		127.46	19.141	1	6291400			31161	2483	21544	21584	35666;35667	35666					0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.290017	980.565481	-1.3686	-0.00067237	-0.09353	-4.595E-05	-1.4621	-0.00071832	491.2902336741258	44.89	0.41759	44.791	44.594	45.012	-0.099449	0.016888	-3.819E-05	NaN	139.97	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230320			31162	2483	21544	21584							0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.290017	980.565481	-0.36793	-0.00018076	-0.61527	-0.00030228	-0.9832	-0.00048304	491.2898119305689	45.004	0.51135	44.752	44.508	45.019	-0.25252	-0.022124	-0.00055084	NaN	139.97	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235330			31163	2483	21544	21584							0.07442046822893644
KIAPNTPQL	9	Unmodified	_KIAPNTPQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.290017	980.565481	-0.40627	-0.0001996	-0.39899	-0.00019602	-0.80526	-0.00039562	491.2898832701444	44.994	0.39543	44.783	44.554	44.95	-0.21109	0.009069	-0.00033833	NaN	139.97	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265540			31164	2483	21544	21584							0.07442046822893644
KIAQDIER	8	Unmodified	_KIAQDIER_					0	0	0		AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.790771484375	2	486.777274	971.539994	-0.99282	-0.00048328	-2.6226	-0.0012766	-3.6154	-0.0017599	486.77576050987653	37.591	0.19778	37.371	37.231	37.429	-0.2195					6	4	2	0	0	0	0.027866	1	3030	3030		34.173	0	1	47739			31165	46	21545	21585	35668	35668					0.053085723004642205
KIAQFQLDL	9	Unmodified	_KIAQFQLDL_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.2965698242188	2	538.310949	1074.60735	-1.1242	-0.00060515	-3.305	-0.0017791	-4.4292	-0.0023843	538.3091010441071	60.806	0.83333	60.593	60.04	60.873	-0.2134					25	21	2	0	0	0	0.02435	1	6978	6978		42.396	5.237	1	302250	+		31166	28172	21546	21586	35669	35669					0.07302602511435907
KIASETTLL	9	Unmodified	_KIASETTLL_					0	0	0			REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2825622558594	2	488.289682	974.564812	0.50891	0.00024849	3.3359	0.0016289	3.8448	0.0018774	488.2912999483636	55.745	0.81728	55.745	55.39	56.207	0					34	22	2	0	0	0	0.022756	1	6128	6128		68.787	15.435	1	733090	+		31167	33437	21547	21587	35670	35670					0.0765120738318501
KIASKNFHT	9	Unmodified	_KIASKNFHT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2881469726562	2	523.293091	1044.57163	-1.4758	-0.00077226	1.1422	0.0005977	-0.33357	-0.00017456	523.293624863541	29.12	0.82085	28.875	28.322	29.142	-0.24524					32	18	2	0	0	0	0.02435	1	1681	1681		34.173	0	1	564630			31168	6479	21548	21588	35671	35671					0.05112565054423612
KIASRMIE	8	Unmodified	_KIASRMIE_					0	0	0		ENSG00000141446|ENST00000269214|ESCO1	ENSG00000141446|ENST00000269214|ESCO1	ENSG00000141446|ENST00000269214|ESCO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2362976074219	2	474.27077	946.526987	-0.30756	-0.00014587	0.22048	0.00010457	-0.087078	-4.1299E-05	474.27073848291434	29.402	0.59803	29.48	29.165	29.763	0.078344					21	14	2	0	0	0	0.027866	1	1739	1739		68.787	24.67	1	117170			31169	5491	21549	21589	35672	35672					0.051584179167321054
KIAVVTADGKL	11	Unmodified	_KIAVVTADGKL_					0	0	0		nc|ENSG00000148187|Q96E11-7|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;nc|ENSG00000148187|Q96E11-5|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-3|MRRF;ENSG00000148187|ENST00000344641|MRRF;ENST00000435941.1_1_X:122250823-122251621:-|nuORF;nc|ENSG00000148187|Q96E11-8|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2103881835938	2	557.845156	1113.67576	-0.26256	-0.00014647	0.10881	6.0699E-05	-0.15375	-8.5767E-05	557.8450939232209	34.562	0.6491	34.355	34.082	34.731	-0.20696					32	15	3	0	0	0	0.024736	1	2609	2609		29.17	13.528	1	366510			31170	18368	21550	21590	35673	35673					0.12346847091271229
KIAVVTADGKL	11	Unmodified	_KIAVVTADGKL_					0	0	0		nc|ENSG00000148187|Q96E11-7|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;nc|ENSG00000148187|Q96E11-5|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-3|MRRF;ENSG00000148187|ENST00000344641|MRRF;ENST00000435941.1_1_X:122250823-122251621:-|nuORF;nc|ENSG00000148187|Q96E11-8|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.845156	1113.67576	-0.11254	-6.278E-05	-0.037583	-2.0966E-05	-0.15012	-8.3746E-05	557.8450116525306	34.677	0.60534	34.453	34.179	34.785	-0.22412	0.048509	-0.00029453	NaN	29.17	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357360			31171	18368	21550	21590							0.12346847091271229
KIAYWEVF	8	Unmodified	_KIAYWEVF_					0	0	0		nc|ENSG00000166596|Q8N1V2-3|CFAP52;ENSG00000166596|ENST00000352665|CFAP52;nc|ENSG00000166596|Q8N1V2-2|CFAP52;ENST00000576630.5_1_17:9487588-9546512:+|nuORF	nc|ENSG00000166596|Q8N1V2-3|CFAP52	nc|ENSG00000166596|Q8N1V2-3|CFAP52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2532348632812	2	528.28166	1054.54877	-0.4559	-0.00024085	2.2675	0.0011979	1.8116	0.00095704	528.2819930281249	36.429	0.45564	36.224	35.987	36.443	-0.20518					14	11	2	0	0	0	0.027866	1	2815	2815		20.482	0	1	113500			31172	7588	21551	21591	35674	35674					0.023675459369314922
KICEAVSL	8	Carbamidomethyl (C)	_KIC(Carbamidomethyl (C))EAVSL_	KIC(1)EAVSL		KIC(130)EAVSL		0	1	0		ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.24786376953125	2	460.249503	918.484453	0.876	0.00040318	-4.3742	-0.0020132	-3.4982	-0.00161	460.24739003544744	71.004	1.4212	71.004	70.483	71.904	0					87	35	4	0	0	0	0.26064	1	8609	8609		128.86	8.2401	1	6287900			31173	8116	21552	21592	35675	35675	96				0.021950227885099594
KICFMTMIVS	10	Unmodified	_KICFMTMIVS_					0	0	0		ENST00000524544.1_1_11:80364480-80364744:-|nuORF	ENST00000524544.1_1_11:80364480-80364744:-|nuORF	ENST00000524544.1_1_11:80364480-80364744:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.7615966796875	2	586.797449	1171.58034	0.03166	1.8578E-05	-2.766	-0.0016231	-2.7344	-0.0016045	586.7957943605263	76.977	0.6777	76.709	76.17	76.848	-0.26806					17	8	3	0	0	0	0.03519	1	9118	9118		34.173	3.6689	1	129750			31174	16064	21553	21593	35676	35676					0.0014171131269904436
KICGLITAF	9	Unmodified	_KICGLITAF_					0	0	0		OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2192687988281	2	483.278063	964.541574	0.15404	7.4442E-05	4.1953	0.0020275	4.3494	0.0021019	483.27965329365793	32.584	0.40873	32.347	32.13	32.539	-0.23666					14	9	2	0	0	0	0.024412	1	2228	2228		24.203	0	1	122780			31175	18912	21554	21594	35677	35677					0.05788490064855978
KICGLITAF	9	Unmodified	_KICGLITAF_					0	0	0		OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.278063	964.541574	0.3513	0.00016978	4.4541	0.0021526	4.8054	0.0023223	483.2797947769326	32.592	0.36723	32.399	32.249	32.616	-0.19261	0.022953	0.0001382	NaN	17.365	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95607			31176	18912	21554	21594							0.05788490064855978
KICGLITAF	9	Unmodified	_KICGLITAF_					0	0	0		OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	OR2M3|p.M144I|1|0.23|ENSG00000228198|chr1:248203499-248203499|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.278063	964.541574	-0.019728	-9.534E-06	4.2325	0.0020455	4.2128	0.0020359	483.27944246164776	32.54	0.44216	32.382	32.245	32.687	-0.15772	0.006054	-7.5987E-05	NaN	17.365	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134090			31177	18912	21554	21594							0.05788490064855978
KICTSRTWL	9	Unmodified	_KICTSRTWL_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3004150390625	2	554.302601	1106.59065	-0.52293	-0.00028986	-2.4101	-0.0013359	-2.933	-0.0016258	554.3010446323304	77.087	1.1642	76.925	76.7	77.864	-0.16196					52	27	3	0	0	0	0.53979	1	9189	9189		56.721	9.0637	1	1228800	+		31178	24620	21555	21595	35678	35678					0.041617783538185904
KIDADKDGFVT	11	Unmodified	_KIDADKDGFVT_					0	0	0		nc|ENSG00000128595|O43852-7|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-2|CALU;nc|ENSG00000128595|O43852-4|CALU	nc|ENSG00000128595|O43852-7|CALU	nc|ENSG00000128595|O43852-7|CALU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5110778808594	3	403.543432	1207.60847	1.0554	0.00042591	0.55049	0.00022215	1.6059	0.00064806	403.5435509399183	32.13	1.0414	31.938	31.164	32.205	-0.19261					54	24	4	0	0	0	0.024777	1	2170	2170		48.188	5.8499	1	219240			31179	18256	21556	21596	35679	35679					0.012967720896540413
KIDDNIKKAMA	11	Unmodified	_KIDDNIKKAMA_					0	0	0			REV__ENSG00000181433|ENST00000370709|SAGE1	REV__ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2315673828125	3	416.232312	1245.67511	-0.81461	-0.00033907	-0.97352	-0.00040521	-1.7881	-0.00074428	416.2319342734464	21.111	2.258	20.898	20.525	22.783	-0.2128					156	46	7	0	0	0	0.99689	1	603	603		37.508	1.1905	1	3140900	+		31180	27405	21557	21597	35680	35680					0.06209684379928149
KIDENQLMY	9	Unmodified	_KIDENQLMY_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2800903320312	2	577.281531	1152.54851	0.56707	0.00032736	-1.1966	-0.00069078	-0.62954	-0.00036342	577.2807066820302	50.953	0.72381	50.841	50.525	51.249	-0.11163					43	18	3	0	0	0	0.247	1	5210	5210		82.75	32.726	1	2209800			31181	3244	21558	21598	35681	35681					-0.021662418452024212
KIDENQLMY	9	Unmodified	_KIDENQLMY_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.2821044921875	2	577.281531	1152.54851	-0.35361	-0.00020413	-0.12259	-7.0766E-05	-0.47619	-0.0002749	577.2813035402088	51.214	0.8036	50.938	50.627	51.431	-0.27643					53	20	4	0	0	0	0.2101	2	5233	5233;5244		87.696	27.293	1	2023000			31182	3244	21558	21598	35682;35683	35682					-0.021662418452024212
KIDENQLMY	9	Unmodified	_KIDENQLMY_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2817993164062	2	577.281531	1152.54851	0.3994	0.00023057	-0.86861	-0.00050143	-0.46921	-0.00027087	577.2808177638217	51.035	0.76787	50.854	50.572	51.34	-0.18071					50	19	4	0	0	0	0.10464	1	5215	5215		109.48	51.232	1	2197500			31183	3244	21558	21598	35684	35684					-0.021662418452024212
KIDGRRVL	8	Unmodified	_KIDGRRVL_					0	0	0		ENST00000595231.5_1_19:49605423-49611697:+|nuORF;ENST00000601065.5_1_19:49605423-49611697:+|nuORF;ENST00000401730.5_1_19:49606720-49611697:+|nuORF;nc|ENSG00000104852|P08621-4|SNRNP70;ENST00000544278.2_1_19:49607703-49611697:+|nuORF;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70	ENST00000595231.5_1_19:49605423-49611697:+|nuORF	ENST00000595231.5_1_19:49605423-49611697:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.80035400390625	2	478.803626	955.592698	0.030114	1.4419E-05	-0.51009	-0.00024423	-0.47997	-0.00022981	478.8033592552254	22.225	0.43348	22.023	21.76	22.194	-0.20199					13	8	2	0	0	0	0.027866	1	732	732		53.351	0	1	64693			31184	2606	21559	21599	35685	35685					0.11312575153931448
KIDGVEQL	8	Unmodified	_KIDGVEQL_					0	0	0		nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF	nc|ENSG00000073969|P46459-2|NSF	nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2770690917969	2	451.2531	900.491647	-0.020532	-9.2652E-06	0.52799	0.00023826	0.50746	0.00022899	451.2532058388276	67.026	0.91145	67.05	66.601	67.513	0.023911					44	21	3	0	0	0	0.027866	1	7910	7910		68.787	4.5796	1	1015600			31185	1521	21560	21600	35686	35686					0.03742078660570769
KIDKPEMPRL	10	Unmodified	_KIDKPEMPRL_					0	0	0			REV__ENSG00000152465|ENST00000378165|NMT2	REV__ENSG00000152465|ENST00000378165|NMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.5704650878906	3	409.569036	1225.68528	0.049554	2.0296E-05	2.9061	0.0011903	2.9557	0.0012106	409.5702718980634	32.249	0.95272	32.261	31.902	32.855	0.011799					84	24	5	0	0	0	1.0236	1	2198	2198		42.864	0	1	5516500	+		31186	24844	21561	21601	35687	35687					0.08146292105175235
KIDLLDNQP	9	Unmodified	_KIDLLDNQP_					0	0	0			REV__nc|ENSG00000156096|P06133-3|UGT2B4	REV__nc|ENSG00000156096|P06133-3|UGT2B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2763671875	2	528.290214	1054.56587	-0.56609	-0.00029906	2.3198	0.0012255	1.7537	0.00092646	528.7936184575955	48.781	0.45708	48.848	48.486	48.943	0.066799					15	12	2	0	0	0	0.02438	1	4945	4945		46.457	7.6506	1	86956	+		31187	36806	21562	21602	35688	35688					0.040774217520947786
KIDLLDNQP	9	Unmodified	_KIDLLDNQP_					0	0	0			REV__nc|ENSG00000156096|P06133-3|UGT2B4	REV__nc|ENSG00000156096|P06133-3|UGT2B4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.290214	1054.56587	-1.021	-0.00053939	1.7122	0.00090453	0.69117	0.00036514	528.2910322414434	48.928	0.71553	48.828	48.471	49.186	-0.1008	0.021504	-0.00014462	NaN	46.457	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523730	+		31188	36806	21562	21602							0.040774217520947786
KIDLLDNQP	9	Unmodified	_KIDLLDNQP_					0	0	0			REV__nc|ENSG00000156096|P06133-3|UGT2B4	REV__nc|ENSG00000156096|P06133-3|UGT2B4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.290214	1054.56587	-0.59655	-0.00031515	1.5062	0.00079573	0.90969	0.00048058	528.2907354545234	49.183	0.58656	48.903	48.575	49.161	-0.27977	0.097431	-0.00036221	NaN	46.457	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512950	+		31189	36806	21562	21602							0.040774217520947786
KIDLLVEKLF	10	Unmodified	_KIDLLVEKLF_					0	0	0			REV__ENSG00000124507|ENST00000244458|PACSIN1	REV__ENSG00000124507|ENST00000244458|PACSIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.5873718261719	3	406.588313	1216.74311	-0.18538	-7.5374E-05	-2.4749	-0.0010063	-2.6603	-0.0010816	406.5876067950022	25.442	1.4271	25.215	24.887	26.314	-0.22683					124	36	6	0	0	0	1.0275	1	1261	1261		42.338	0	1	39997000	+		31190	22768	21563	21603	35689	35689					0.14340877302220179
KIDLLVEKLF	10	Unmodified	_KIDLLVEKLF_					0	0	0			REV__ENSG00000124507|ENST00000244458|PACSIN1	REV__ENSG00000124507|ENST00000244458|PACSIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.5874938964844	3	406.588313	1216.74311	0.3256	0.00013238	-3.0295	-0.0012318	-2.7039	-0.0010994	406.5873231361823	25.27	2.8978	25.098	24.732	27.63	-0.17151					174	72	6	0	0	0	1.0275	2	1217	1204;1217		42.338	13.168	1	31222000	+		31191	22768	21563	21603	35690;35691	35691					0.14340877302220179
KIDSYDVII	9	Unmodified	_KIDSYDVII_					0	0	0		ENSG00000064225|ENST00000483910|ST3GAL6	ENSG00000064225|ENST00000483910|ST3GAL6	ENSG00000064225|ENST00000483910|ST3GAL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7888793945312	2	533.294965	1064.57538	-0.66846	-0.00035649	0.32115	0.00017127	-0.34731	-0.00018522	533.2952587675912	78.146	1.3995	78.146	77.51	78.91	0					48	33	2	0	0	0	0.024021	1	9660	9660		49.442	0	1	1081500			31192	1270	21564	21604	35692	35692					0.04567190037619184
KIEEADCKN	9	Unmodified	_KIEEADCKN_					0	0	0		ENSG00000039537|ENST00000337836|C6	ENSG00000039537|ENST00000337836|C6	ENSG00000039537|ENST00000337836|C6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2881469726562	2	525.250231	1048.48591	-1.5618	-0.00082034	-2.5835	-0.001357	-4.1453	-0.0021773	525.2481926944916	28.653	0.33665	28.408	28.241	28.578	-0.24524					10	7	2	0	0	0	0.024405	1	1681	1681		35.618	3.6634	1	36409			31193	1062	21565	21605	35693	35693					-0.0363938791340388
KIEEHLARVE	10	Unmodified	_KIEEHLARVE_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	408.88507080078125	3	408.562938	1222.66699	0.53261	0.00021761	0.7769	0.00031741	1.3095	0.00053502	408.5633131619703	23.417	0.43031	23.215	22.967	23.398	-0.20193					13	9	2	0	0	0	0.03519	1	900	900		13.508	0	1	82427			31194	809	21566	21606	35694	35694					0.06455873454797256
KIEELSHQI	9	Unmodified	_KIEELSHQI_					0	0	0			REV__ENSG00000165349|ENST00000374299|SLC7A3	REV__ENSG00000165349|ENST00000374299|SLC7A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.8639526367188	2	548.803488	1095.59242	1.387	0.00076121	-2.1691	-0.0011904	-0.78206	-0.0004292	548.802185435906	36.485	0.43946	36.286	36.016	36.456	-0.19829					17	10	2	0	0	0	0.020937	1	2869	2869		98.629	2.4389	1	195300	+		31195	25876	21567	21607	35695	35695					0.048451106434413305
KIEGEVKSV	9	Unmodified	_KIEGEVKSV_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.78338623046875	2	494.787307	987.560061	0.38939	0.00019266	-2.3259	-0.0011508	-1.9365	-0.00095817	494.78527947553744	32.667	0.95605	32.475	32.029	32.985	-0.19261					52	22	4	0	0	0	0.30449	1	2290	2290		75.043	7.5496	1	2605500	+		31196	29012	21568	21608	35696	35696					0.06578323240432837
KIEGHLAVQP	10	Unmodified	_KIEGHLAVQP_					0	0	0		nc|ENSG00000170632|Q8N2F6-6|ARMC10;nc|ENSG00000170632|Q8N2F6-4|ARMC10;nc|ENSG00000170632|Q8N2F6-5|ARMC10;nc|ENSG00000170632|Q8N2F6-3|ARMC10;nc|ENSG00000170632|Q8N2F6-2|ARMC10;ARMC10|p.F310Sfs*12|1|0.3|ENSG00000170632|chr7:103098446-103098446|T/-|frameshift_variant;ENSG00000170632|ENST00000323716|ARMC10;ENST00000313754.4_1_3:94225612-94226386:-|nuORF	nc|ENSG00000170632|Q8N2F6-6|ARMC10	nc|ENSG00000170632|Q8N2F6-6|ARMC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7761840820312	2	546.314023	1090.61349	-0.86106	-0.00047041	0.64046	0.00034989	-0.22061	-0.00012052	546.314232469784	52.058	0.83762	51.91	51.609	52.447	-0.14735					32	22	2	0	0	0	0.03519	1	5617	5617		41.427	0	1	1568800			31197	131	21569	21609	35697	35697					0.07181120742939129
KIEIEIKIN	9	Unmodified	_KIEIEIKIN_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF;ENST00000401893.7_1_1:33116898-33134028:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2885131835938	2	550.339707	1098.66486	-1.0793	-0.00059397	-0.07147	-3.9333E-05	-1.1507	-0.0006333	550.3395069425573	48.158	0.83854	48.005	47.702	48.54	-0.15301					63	24	4	0	0	0	0.024466	1	4882	4882		39.253	0	1	3103400			31198	6950	21570	21610	35698	35698					0.1194744471699778
KIEIPYETV	9	Unmodified	_KIEIPYETV_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.8399658203125	2	546.30279	1090.59103	-0.38204	-0.00020871	4.2994	0.0023488	3.9174	0.0021401	546.8066441683194	99.791	0.27518	99.62	99.451	99.726	-0.17088					13	7	3	0	0	0	0.02435	1	12362	12362		42.396	3.1433	1	44747	+		31199	25494	21571	21611	35699	35699					0.049354765546468116
KIEIWKLP	8	Unmodified	_KIEIWKLP_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.80224609375	2	513.820953	1025.62735	0.13238	6.8019E-05	-2.71	-0.0013924	-2.5776	-0.0013244	513.8194078673971	68.744	1.0671	68.452	68.171	69.238	-0.29267					38	27	2	0	0	0	0.027866	1	8295	8295		42.396	9.5837	1	384620			31200	18321	21572	21612	35700	35700					0.11556398242032628
KIEKGDVIYI	10	Unmodified	_KIEKGDVIYI_					0	0	0		CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1;nc|ENSG00000134376|P82279-4|CRB1	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3436889648438	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.1265	1	11628	11628		24.519	0.31644	1	12648000			31201	584	21573	21613	35701	35701					0.09415427371436635
KIEKLKAE	8	Unmodified	_KIEKLKAE_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7312927246094	2	479.800217	957.585882	-0.4099	-0.00019667	-0.27029	-0.00012968	-0.68019	-0.00032635	479.79985562532954	30.778	0.70817	30.853	30.586	31.294	0.074314					34	16	3	0	0	0	0.027866	1	1993	1993		60.972	0	1	492720	+		31202	23685	21574	21614	35702	35702					0.10539217482687491
KIEKQTRHRVF	11	Unmodified	_KIEKQTRHRVF_					0	0	0			REV__nc|ENSG00000226085|P0C7P4|UQCRFS1P1	REV__nc|ENSG00000226085|P0C7P4|UQCRFS1P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2832336425781	3	481.284398	1440.83137	0.24413	0.0001175	-2.2331	-0.0010748	-1.989	-0.00095726	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0855	1	12981	12981		15.337	1.2515	1	1053600	+		31203	37140	21575	21615	35703	35703					0.12858310665387762
KIEKVEKNT	9	Unmodified	_KIEKVEKNT_					0	0	0		nc|ENSG00000166130|Q70UQ0-2|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP	nc|ENSG00000166130|Q70UQ0-2|IKBIP	nc|ENSG00000166130|Q70UQ0-2|IKBIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8314819335938	2	544.819138	1087.62372	-0.076033	-4.1424E-05	4.1862	0.0022807	4.1101	0.0022393	544.8211747185954	71.483	0.85305	71.221	70.908	71.761	-0.26199					48	20	4	0	0	0	0.024541	1	8370	8370		30.318	0	1	562060			31204	18472	21576	21616	35704	35704					0.08341683677531364
KIELCNQML	9	Unmodified	_KIELCNQML_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.810546875	2	546.28302	1090.55149	-0.19423	-0.0001061	-3.9152	-0.0021388	-4.1094	-0.0022449	546.7818846108557	70.29	0.36259	70.076	69.772	70.135	-0.21425					11	8	2	0	0	0	0.024484	1	8146	8146		37.812	8.662	1	108590	+		31205	27316	21577	21617	35705	35705					0.009833100079276846
KIELHGKPI	9	Unmodified	_KIELHGKPI_					0	0	0		ENST00000468005.1_1_7:23455823-23509786:-|nuORF;chr7:23468542-23469936|450|41.05|0.18|7.84|-|2|IGF2BP3,IGF2BP3|1;ENST00000476938.5_1_7:23401151-23509630:-|nuORF;ENSG00000136231|ENST00000258729|IGF2BP3	ENST00000468005.1_1_7:23455823-23509786:-|nuORF	ENST00000468005.1_1_7:23455823-23509786:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.819091796875	2	517.821484	1033.62842	-0.13475	-6.9778E-05	-4.1199	-0.0021334	-4.2546	-0.0022031	517.8191984377918	91.962	1.0921	91.84	91.372	92.464	-0.12242					80	25	5	0	0	0	0.80003	1	11292	11292		39.253	12.457	1	1129300			31206	14860	21578	21618	35706	35706					0.1129461261095912
KIELKWSF	8	Unmodified	_KIELKWSF_					0	0	0			REV__ENST00000534699.5_1_1:115279403-115279445:-|nuORF	REV__ENST00000534699.5_1_1:115279403-115279445:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7689208984375	2	525.80276	1049.59097	-0.28055	-0.00014751	-2.9804	-0.0015671	-3.2609	-0.0017146	525.8011815330349	34.336	0.45179	34.129	33.75	34.201	-0.20696					17	11	2	0	0	0	0.027866	1	2460	2460		38.806	0	1	125950	+		31207	34649	21579	21619	35707	35707					0.06815521345333764
KIELPFNIRH	10	Unmodified	_KIELPFNIRH_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5926208496094	3	422.915423	1265.72444	-0.78044	-0.00033006	3.1144	0.0013171	2.334	0.00098708	422.91744306922635	50.259	0.20092	50.259	50.21	50.411	0					8	5	2	0	0	0	0.03519	1	5258	5258		20.03	2.1973	1	79722	+		31208	36711	21580	21620	35708	35708					0.10220760451034039
KIELSKVAM	9	Unmodified	_KIELSKVAM_					0	0	0			REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF	REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8036193847656	2	509.801903	1017.58925	0.28678	0.0001462	3.2196	0.0016413	3.5063	0.0017875	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.77768	2	10466	10466;10478		40.778	8.7492	1	3746700	+		31209	32261	21581	21621	35709;35710	35709					0.08116144265068215
KIELSKVAM	9	Unmodified	_KIELSKVAM_					0	0	0			REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF	REV__ENST00000425839.1_1_6:30437447-30438005:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8039245605469	2	509.801903	1017.58925	0.56391	0.00028748	2.8432	0.0014495	3.4071	0.0017369	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.6504	4	10554	10312;10432;10444;10554		49.442	8.7492	1	3699900	+		31210	32261	21581	21621	35711;35712;35713;35714	35714					0.08116144265068215
KIEMSSCDLW	10	Unmodified	_KIEMSSCDLW_					0	0	0			REV__ENSG00000196284|ENST00000371459|SUPT3H	REV__ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.92291259765625	3	404.519353	1210.53623	-0.92049	-0.00037236	0.58779	0.00023777	-0.3327	-0.00013458	404.51932027082387	26.623	0.83425	26.46	26.133	26.967	-0.16331					42	20	3	0	0	0	0.03519	1	1413	1413		53.597	0	1	570230	+		31211	28158	21582	21622	35715	35715					-0.060616015799041634
KIENLEKLI	9	Unmodified	_KIENLEKLI_					0	0	0		nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2891845703125	2	550.339707	1098.66486	-0.71054	-0.00039104	-0.41838	-0.00023025	-1.1289	-0.00062129	550.3393443544504	47.968	1.0048	47.968	47.685	48.69	0					71	29	4	0	0	0	0.023842	1	4889	4889		67.494	19.836	1	2998500			31212	4562	21583	21623	35716	35716					0.1194744471699778
KIEQAIYKL	9	Unmodified	_KIEQAIYKL_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.3322143554688	2	553.334424	1104.6543	-0.076569	-4.2368E-05	-3.3934	-0.0018777	-3.4699	-0.00192	553.3323919260035	95.322	1.2671	95.325	94.957	96.224	0.0033798					89	29	4	0	0	0	0.93097	1	12130	12130		30.318	2.4355	1	4391700			31213	8297	21584	21624	35717	35717					0.10615462062560255
KIERFKKAVE	10	Unmodified	_KIERFKKAVE_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.3750610351562	2	624.377155	1246.73976	0.23281	0.00014536	4.2227	0.0026366	4.4555	0.0027819	624.3801704521211	106.08	0.15479	105.95	105.83	105.99	-0.1238					8	5	2	0	0	0	1.0122	1	13205	13205		44.377	1.5129	1	50671			31214	9305	21585	21625	35718	35718					0.12625627248235105
KIERLVEV	8	Unmodified	_KIERLVEV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2786560058594	2	493.305667	984.596781	0.2749	0.00013561	1.5528	0.00076601	1.8277	0.00090162	493.30620016656025	89.778	0.26056	89.64	89.489	89.749	-0.13761					7	5	2	0	0	0	0.027866	1	10942	10942		24.203	1.1603	1	23676			31215	18521	21586	21626	35719	35719					0.10386619856990364
KIEVLHREKAS	11	Unmodified	_KIEVLHREKAS_					0	0	0			REV__RNF217-TPD52L1|3|fusion	REV__RNF217-TPD52L1|3|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.2569885253906	3	437.257738	1308.75138	0.14146	6.1854E-05	-0.92656	-0.00040514	-0.7851	-0.00034329	437.25730148495717	97.255	3.51	97.255	96.194	99.704	0					235	80	4	0	0	0	1.0501	1	12466	12466		25.068	3.2874	1	1246800	+		31216	37446	21587	21627	35720	35720					0.10935824271541605
KIEVLHREKAS	11	Unmodified	_KIEVLHREKAS_					0	0	0			REV__RNF217-TPD52L1|3|fusion	REV__RNF217-TPD52L1|3|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2564392089844	3	437.257738	1308.75138	0.70758	0.0003094	-1.6013	-0.00070019	-0.89375	-0.0003908	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.03	1	12207	12207		30.139	5.8632	1	1350500	+		31217	37446	21587	21627	35721	35721					0.10935824271541605
KIEVLHREKAS	11	Unmodified	_KIEVLHREKAS_					0	0	0			REV__RNF217-TPD52L1|3|fusion	REV__RNF217-TPD52L1|3|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2568664550781	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	1.053	1	12078	12078		24.276	0.89802	1	1104700	+		31218	37446	21587	21627	35722	35722					0.10935824271541605
KIFAEGLNPE	10	Unmodified	_KIFAEGLNPE_					0	0	0		ENST00000406003.2_1_12:10264431-10264902:+|nuORF	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.2875366210938	2	559.298039	1116.58152	0.11039	6.1742E-05	-0.67863	-0.00037956	-0.56824	-0.00031782	559.2974268831888	51.176	0.49321	50.9	50.702	51.195	-0.27643					26	12	3	0	0	0	0.03519	1	5243	5243		41.427	0	1	546020			31219	13725	21588	21628	35723	35723					0.027897082691197284
KIFCARQNCS	10	Unmodified	_KIFCARQNCS_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2820434570312	2	585.281343	1168.54813	0.31206	0.00018265	2.7321	0.0015991	3.0442	0.0017817	585.2828750619565	50.865	1.2401	50.753	50.563	51.803	-0.11163					98	32	4	0	0	0	0.40067	2	5256	5231;5256		98.629	8.2596	1	8097000			31220	2832	21589	21629	35724;35725	35725					-0.029399400460533798
KIFCARQNCS	10	Unmodified	_KIFCARQNCS_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.2825317382812	2	585.281343	1168.54813	-0.67361	-0.00039425	3.7697	0.0022063	3.0961	0.0018121	585.2835500400347	51.122	1.4935	50.846	50.48	51.974	-0.27643					69	39	4	0	0	0	0.28861	2	5291	5281;5291		110.12	14.305	1	7690500			31221	2832	21589	21629	35726;35727	35727					-0.029399400460533798
KIFCARQNCS	10	Unmodified	_KIFCARQNCS_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2828369140625	2	585.281343	1168.54813	0.16961	9.9272E-05	2.8545	0.0016707	3.0241	0.00177	585.2829859978439	50.959	1.2461	50.778	50.572	51.818	-0.18071					89	32	4	0	0	0	0.11225	1	5243	5243		132.76	28.701	1	9209500			31222	2832	21589	21629	35728	35728					-0.029399400460533798
KIFDEILVNA	10	Unmodified	_KIFDEILVNA_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.3289184570312	2	581.329339	1160.64412	-0.39247	-0.00022815	-0.1769	-0.00010283	-0.56936	-0.00033099	581.3291799308944	70.89	1.3348	70.89	70.569	71.904	0					112	33	5	0	0	0	0.047364	5	8576	8555;8565;8576;8588;8601		148.69	56.085	1	18472000			31223	18271;1599	21590	21630	35729;35730;35731;35732;35733	35731					0.07022854337333229
KIFDEILVNA	10	Unmodified	_KIFDEILVNA_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.3295288085938	2	581.329339	1160.64412	0.18245	0.00010606	-0.69948	-0.00040663	-0.51703	-0.00030056	581.3288739671503	71.248	2.4397	70.959	70.633	73.073	-0.28858					162	61	5	0	0	0	0.069016	5	8587	8565;8576;8587;8600;8612		143.37	48.939	1	18266000			31224	18271;1599	21590	21630	35734;35735;35736;35737;35738	35736					0.07022854337333229
KIFDEILVNA	10	Unmodified	_KIFDEILVNA_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.3294677734375	2	581.329339	1160.64412	0.15067	8.7591E-05	-0.65018	-0.00037797	-0.49951	-0.00029038	581.3289466577504	71.015	2.2648	71.026	70.68	72.945	0.010735					146	57	5	0	0	0	0.031471	6	8523	8487;8498;8510;8523;8535;8550		154.01	65.748	1	19346000			31225	18271;1599	21590	21630	35739;35740;35741;35742;35743;35744	35742					0.07022854337333229
KIFDEILVNA	10	Unmodified	_KIFDEILVNA_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.3291625976562	2	581.329339	1160.64412	0.061708	3.5873E-05	-0.45129	-0.00026235	-0.38958	-0.00022648	581.3289559377291	71.267	1.1709	70.995	70.702	71.873	-0.27203					80	27	5	0	0	0	0.11975	4	8312	8300;8312;8325;8340		131.12	51.403	1	4536900			31226	18271;1599	21590	21630	35745;35746;35747;35748	35746					0.07022854337333229
KIFDEILVNA	10	Unmodified	_KIFDEILVNA_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.3294067382812	2	581.329339	1160.64412	-0.75016	-0.00043609	0.52282	0.00030393	-0.22734	-0.00013216	581.3295514461875	71.186	1.2402	70.928	70.607	71.848	-0.25712					88	29	5	0	0	0	0.11975	5	8315	8295;8304;8315;8327;8340		131.12	43.362	1	5660600			31227	18271;1599	21590	21630	35749;35750;35751;35752;35753	35751					0.07022854337333229
KIFDEILVNA	10	Unmodified	_KIFDEILVNA_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.3292846679688	2	581.329339	1160.64412	0.12162	7.0703E-05	-0.41703	-0.00024243	-0.2954	-0.00017173	581.3289763031394	71.084	1.5407	70.87	70.563	72.104	-0.21425					93	36	4	0	0	0	0.13984	4	8279	8269;8279;8289;8302		128.6	58.975	1	5065900			31228	18271;1599	21590	21630	35754;35755;35756;35757	35755					0.07022854337333229
KIFFFKKFL	9	Unmodified	_KIFFFKKFL_					0	0	0		ENST00000483628.1_1:206580106-206580199:+|nuORF	ENST00000483628.1_1:206580106-206580199:+|nuORF	ENST00000483628.1_1:206580106-206580199:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.5873718261719	3	406.586356	1216.73724	0.41999	0.00017076	1.8186	0.00073943	2.2386	0.0009102	406.5873798753871	25.209	2.1595	25.038	24.647	26.806	-0.17078					142	54	6	0	0	0	0.80003	1	1185	1185		39.253	0	1	30937000			31229	15287	21591	21631	35758	35758					0.1375382358121442
KIFGDKGVVL	10	Unmodified	_KIFGDKGVVL_					0	0	0			REV__ENSG00000139344|ENST00000266736|AMDHD1	REV__ENSG00000139344|ENST00000266736|AMDHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3231201171875	2	538.329142	1074.64373	-0.6263	-0.00033715	-2.8899	-0.0015557	-3.5162	-0.0018929	538.3275828035606	100.97	1.1924	100.8	100.66	101.85	-0.17178					47	28	2	0	0	0	1.1088	1	12526	12526		31.53	4.8369	1	144770	+		31230	23936	21592	21632	35759	35759					0.10939479408125408
KIFKGVLV	8	Unmodified	_KIFKGVLV_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.7662048339844	2	452.304939	902.595324	0.46598	0.00021077	-0.53498	-0.00024197	-0.068999	-3.1209E-05	452.304539943971	46.605	0.73209	46.605	46.308	47.04	0					50	19	4	0	0	0	0.027866	1	4607	4607		57.811	7.7867	1	1690000			31231	10602	21593	21633	35760	35760					0.14013030558885475
KIFKGVLV	8	Unmodified	_KIFKGVLV_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.304939	902.595324	-0.28099	-0.00012709	0.29012	0.00013122	0.0091363	4.1324E-06	452.3048900804694	46.754	0.77676	46.601	46.276	47.052	-0.15301	-0.027788	0.00031022	NaN	57.811	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1797700			31232	10602	21593	21633							0.14013030558885475
KIFKGVLV	8	Unmodified	_KIFKGVLV_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	452.304939	902.595324	0.01933	8.7431E-06	0.0011429	5.1694E-07	0.020473	9.2601E-06	452.30477599009345	46.628	0.71974	46.68	46.342	47.061	0.051399	0.051063	4.8805E-05	NaN	57.811	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1687500			31233	10602	21593	21633							0.14013030558885475
KIFLPVLLA	9	Unmodified	_KIFLPVLLA_					0	0	0		ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.30816650390625	2	507.341521	1012.66849	-1.0372	-0.00052623	2.3122	0.0011731	1.275	0.00064684	507.3423420979668	43.586	0.38505	43.367	43.14	43.525	-0.21939					16	10	2	0	0	0	0.024517	1	3965	3965		26.796	1.3459	1	370830			31234	6849	21594	21634	35761	35761					0.16266159281508408
KIFPVMGHD	9	Unmodified	_KIFPVMGHD_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4;REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.747802734375	2	522.27077	1042.52699	0.62979	0.00032892	-2.5922	-0.0013538	-1.9624	-0.0010249	522.7716742203236	74.6	0.45869	74.418	74.18	74.639	-0.18279					12	10	2	0	0	0	0.024506	1	8781	8781		23.042	0	1	38750	+		31235	23009;36647	21595	21635	35762	35762					0.007424179167401235
KIFQEMLYI	9	Oxidation (M)	_KIFQEM(Oxidation (M))LYI_		KIFQEM(1)LYI		KIFQEM(150)LYI	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.8199462890625	2	600.820292	1199.62603	-1.7111	-0.0010281	1.7415	0.0010463	0.030347	1.8233E-05	600.8211270267275	66.976	0.97604	66.976	66.63	67.606	0					61	23	4	0	0	0	0.016758	1	7986	7986		153.04	34.293	1	2826500			31236	3431	21596	21636	35763	35763		132			0.03420396090973554
KIFQEMLYI	9	Oxidation (M)	_KIFQEM(Oxidation (M))LYI_					0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	600.820292	1199.62603	-0.78555	-0.00047198	0.60048	0.00036078	-0.18507	-0.00011119	600.8204736694504	67.378	1.1128	67.089	66.749	67.861	-0.28834	0.023056	-0.00063951	NaN	153.04	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3038000			31237	3431	21596	21636				132			0.03420396090973554
KIFQEMLYI	9	Oxidation (M)	_KIFQEM(Oxidation (M))LYI_					0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	600.820292	1199.62603	-1.1959	-0.0007185	1.1408	0.00068539	-0.05511	-3.3111E-05	600.8208195318037	67.11	0.9364	67.134	66.812	67.748	0.023911	0.067541	9.7E-06	NaN	153.04	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2779500			31238	3431	21596	21636				132			0.03420396090973554
KIFSLGPE	8	Unmodified	_KIFSLGPE_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.2279052734375	2	445.752736	889.490919	-0.26608	-0.00011861	-3.7128	-0.001655	-3.9789	-0.0017736	445.75091472644027	25.926	0.79494	25.755	25.581	26.376	-0.17078					41	22	4	0	0	0	0.027866	1	1343	1343		27.882	0	1	650270			31239	4772	21597	21637	35764	35764					0.04175284011523672
KIFSSLLQP	9	Unmodified	_KIFSSLLQP_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2952880859375	2	516.808042	1031.60153	0.20258	0.0001047	1.7519	0.00090538	1.9544	0.0010101	516.8086939241794	37.165	0.54791	36.956	36.806	37.354	-0.2092					19	13	2	0	0	0	0.024511	1	2941	2941		19.104	4.2386	1	171980	+		31240	25256	21598	21638	35765	35765					0.08699503999764602
KIFTLSRAT	9	Unmodified	_KIFTLSRAT_					0	0	0		ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7918090820312	2	518.811116	1035.60768	-0.91355	-0.00047396	0.65431	0.00033947	-0.25923	-0.00013449	518.8112665950609	54.444	1.0401	54.444	54.043	55.083	0					70	29	4	0	0	0	0.024506	1	5885	5885		10.866	0	1	1271600			31241	9174	21599	21639	35766	35766					0.09130022231261137
KIFTLSRAT	9	Unmodified	_KIFTLSRAT_					0	0	0		ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.811116	1035.60768	-0.14536	-7.5416E-05	0.097339	5.0501E-05	-0.048024	-2.4916E-05	518.8109566979186	54.55	0.98091	54.4	53.984	54.965	-0.15036	-0.025831	-2.0819E-05	NaN	14.865	60	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1608500			31242	9174	21599	21639							0.09130022231261137
KIFTLSRAT	9	Unmodified	_KIFTLSRAT_					0	0	0		ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.811116	1035.60768	0.28579	0.00014827	-0.55971	-0.00029038	-0.27392	-0.00014211	518.8106793640698	54.335	0.94007	54.433	53.94	54.881	0.098011	0.0070579	-0.00070258	NaN	14.865	62	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728600			31243	9174	21599	21639							0.09130022231261137
KIFVPGQL	8	Unmodified	_KIFVPGQL_					0	0	0			REV__ENSG00000113805|ENST00000263665|CNTN3	REV__ENSG00000113805|ENST00000263665|CNTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2770690917969	2	451.278921	900.543289	-0.0023362	-1.0543E-06	0.099704	4.4994E-05	0.097368	4.394E-05	451.27880365922806	66.999	0.90451	67.022	66.769	67.674	0.023903					47	21	3	0	0	0	0.75307	1	7910	7910		62.978	0	1	2201700	+		31244	22091	21600	21640	35767	35767					0.08903867145136246
KIFVPLPA	8	Unmodified	_KIFVPLPA_					0	0	0			REV__ENSG00000180785|ENST00000396952|OR51E1	REV__ENSG00000180785|ENST00000396952|OR51E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.77215576171875	2	442.783839	883.553125	0.001046	4.6313E-07	-4.0838	-0.0018082	-4.0828	-0.0018078	442.7817685170442	52.104	0.44448	52.104	51.906	52.351	0					21	11	3	0	0	0	0.027866	1	5579	5579		26.796	8.4717	1	292960	+		31245	27364	21601	21641	35768	35768					0.10669055150503937
KIFVPLPA	8	Unmodified	_KIFVPLPA_					0	0	0			REV__ENSG00000180785|ENST00000396952|OR51E1	REV__ENSG00000180785|ENST00000396952|OR51E1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.783839	883.553125	0.16094	7.126E-05	-4.2924	-0.0019006	-4.1315	-0.0018293	442.78167614278055	52.193	0.51934	52.045	51.846	52.366	-0.14735	-0.011409	-0.00031866	NaN	19.36	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395050	+		31246	27364	21601	21641							0.10669055150503937
KIFVPLPA	8	Unmodified	_KIFVPLPA_					0	0	0			REV__ENSG00000180785|ENST00000396952|OR51E1	REV__ENSG00000180785|ENST00000396952|OR51E1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	442.783839	883.553125	-0.60698	-0.00026876	-3.82	-0.0016915	-4.427	-0.0019602	442.78212896865347	51.929	0.4576	52.021	51.823	52.28	0.091938	-0.035778	9.9651E-05	NaN	19.36	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290870	+		31247	27364	21601	21641							0.10669055150503937
KIFYIKQEPF	10	Unmodified	_KIFYIKQEPF_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.2471618652344	3	438.24818	1311.72271	-0.31996	-0.00014022	-2.5588	-0.0011214	-2.8788	-0.0012616	438.24721304343535	26.589	0.9957	26.67	26.249	27.245	0.081291					92	24	6	0	0	0	1.0896	1	1351	1351		34.087	10.709	1	7103500			31248	10512	21602	21642	35769	35769					0.0793170664239824
KIFYKVLS	8	Unmodified	_KIFYKVLS_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3072509765625	2	499.307678	996.600803	0.65482	0.00032696	-0.64335	-0.00032123	0.011471	5.7275E-06	499.3072189258978	96.764	0.62014	96.627	96.304	96.924	-0.1367					20	13	2	0	0	0	0.027866	1	11943	11943		30.504	7.4612	1	50479	+		31249	24671	21603	21643	35770	35770					0.10236709350692763
KIGAEGLKEI	10	Unmodified	_KIGAEGLKEI_					0	0	0			REV__ENSG00000214435|ENST00000369880|AS3MT	REV__ENSG00000214435|ENST00000369880|AS3MT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.316162109375	2	529.316232	1056.61791	-0.52231	-0.00027647	0.14487	7.6681E-05	-0.37744	-0.00019979	529.316281188261	36.335	0.87106	36.13	35.852	36.723	-0.20518					61	22	5	0	0	0	0.98527	1	2856	2856		47.96	0.30219	1	7387300	+		31250	28779	21604	21644	35771	35771					0.09186585165844008
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7815856933594	2	491.782025	981.549496	-0.49867	-0.00024524	-0.13351	-6.566E-05	-0.63219	-0.0003109	491.7817629395003	32.871	1.0204	32.871	32.569	33.59	0					75	27	4	0	0	0	0.015512	2	2317	2317;2331		159.28	44.381	1	2510100			31251	8788	21605	21645	35772;35773	35772					0.05798340585988626
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.78155517578125	2	491.782025	981.549496	-0.63273	-0.00031117	0.15034	7.3935E-05	-0.48239	-0.00023723	491.78190561950555	32.783	0.84363	32.79	32.445	33.288	0.0066223					71	22	4	0	0	0	0.023452	2	2294	2283;2294		146.79	56.185	1	2623500			31252	8788	21605	21645	35774;35775	35775					0.05798340585988626
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7813415527344	2	491.782025	981.549496	-0.042516	-2.0909E-05	-0.5238	-0.00025759	-0.56631	-0.0002785	491.78161731632235	32.632	1.1905	32.695	32.315	33.506	0.062885					80	31	4	0	0	0	0.042502	2	2232	2232;2251		131.62	35.801	1	2369800			31253	8788	21605	21645	35776;35777	35776					0.05798340585988626
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.782025	981.549496	-0.6448	-0.0003171	0.49234	0.00024212	-0.15246	-7.4977E-05	491.78207352583274	32.978	0.88957	32.747	32.383	33.273	-0.23107	-0.037313	0.00060831	NaN	159.28	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338290			31254	8788	21605	21645							0.05798340585988626
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.782025	981.549496	0.11423	5.6177E-05	-0.12378	-6.0871E-05	-0.0095448	-4.6939E-06	491.78173778884207	32.987	1.0693	32.786	32.41	33.479	-0.20019	0.0022529	2.3245E-06	NaN	159.28	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301470			31255	8788	21605	21645							0.05798340585988626
KIGDEPPKV	9	Unmodified	_KIGDEPPKV_					0	0	0		nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1	nc|ENSG00000178053|P58340|MLF1	nc|ENSG00000178053|P58340|MLF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.782025	981.549496	-0.41347	-0.00020334	0.51756	0.00025453	0.10409	5.1191E-05	491.7819901100523	32.982	1.3168	32.816	32.315	33.632	-0.16565	0.032146	0.00063312	NaN	159.28	67	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241510			31256	8788	21605	21645							0.05798340585988626
KIGDKNKVT	9	Unmodified	_KIGDKNKVT_					0	0	0		ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	ENSG00000188039|ENST00000524140|NWD1	ENSG00000188039|ENST00000524140|NWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78851318359375	2	501.800749	1001.58694	-0.47726	-0.00023949	-0.40163	-0.00020154	-0.87889	-0.00044103	501.8003684987861	32.491	0.45396	32.491	32.262	32.715	0					27	11	3	0	0	0	0.024381	1	2222	2222		45.952	27.69	1	1024600			31257	9687	21606	21646	35778	35778					0.08621431851599937
KIGKEQELF	9	Unmodified	_KIGKEQELF_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8345336914062	2	546.308406	1090.60226	-0.71197	-0.00038896	-3.9516	-0.0021588	-4.6635	-0.0025477	546.8059388307416	48.759	0.18154	48.577	48.521	48.702	-0.18206					6	4	2	0	0	0	0.024447	1	4852	4852		49.442	27.482	1	98033			31258	9435	21607	21647	35779	35779					0.060582986487816015
KIGLIPLQP	9	Unmodified	_KIGLIPLQP_					0	0	0			REV__ENST00000465076.5_1_10:75531037-75531319:+|nuORF	REV__ENST00000465076.5_1_10:75531037-75531319:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27691650390625	2	489.820953	977.627353	-0.41132	-0.00020147	0.24941	0.00012217	-0.16191	-7.9305E-05	489.82103653953277	64.656	0.81744	64.656	64.203	65.02	0					51	21	3	0	0	0	0.02435	1	7616	7616		51.335	1.8939	1	762380	+		31259	32994	21608	21648	35780	35780					0.1376439824202862
KIGLKQLEG	9	Unmodified	_KIGLKQLEG_					0	0	0			REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1	REV__nc|ENSG00000165555|Q6NXP6-2|NOXRED1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.28955078125	2	493.305667	984.596781	-0.28425	-0.00014022	0.39546	0.00019508	0.11121	5.486E-05	493.30577140612866	61.537	0.77925	61.279	60.888	61.667	-0.25725					37	18	3	0	0	0	0.024466	1	6896	6896		31.53	0	1	1108200	+		31260	25901	21609	21649	35781	35781					0.10386619857001733
KIGSIIFQV	9	Unmodified	_KIGSIIFQV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.8103942871094	2	502.810585	1003.60662	-0.18152	-9.1272E-05	-0.42399	-0.00021319	-0.60551	-0.00030446	502.810285499946	69.255	1.0946	69.255	68.898	69.993	0					80	26	5	0	0	0	0.18994	1	8356	8356		90.601	13.283	1	16132000			31261	18521	21610	21650	35782	35782					0.10495807862389483
KIGSIIFQV	9	Unmodified	_KIGSIIFQV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.8101806640625	2	502.810585	1003.60662	0.42488	0.00021363	-1.004	-0.00050481	-0.5791	-0.00029118	502.80998032632203	69.55	1.0676	69.257	68.97	70.038	-0.29291					73	26	4	0	0	0	0.18994	1	8334	8334		90.601	2.9044	1	13895000			31262	18521	21610	21650	35783	35783					0.10495807862389483
KIGSIIFQV	9	Unmodified	_KIGSIIFQV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.8106689453125	2	502.810585	1003.60662	-0.37464	-0.00018837	-0.30786	-0.0001548	-0.6825	-0.00034317	502.8103406634774	69.304	1.0992	69.319	68.974	70.073	0.015129					83	26	5	0	0	0	0.1158	2	8250	8250;8286		107.01	5.4068	1	13256000			31263	18521	21610	21650	35784;35785	35784					0.10495807862389483
KIGSKTPL	8	Unmodified	_KIGSKTPL_					0	0	0		ABHD3|p.P261Lfs*5|1|0.28|ENSG00000158201|chr18:21659223-21659230|GTTCAGTG/-|frameshift_variant;ENSG00000158201|ENST00000289119|ABHD3	ABHD3|p.P261Lfs*5|1|0.28|ENSG00000158201|chr18:21659223-21659230|GTTCAGTG/-|frameshift_variant	ABHD3|p.P261Lfs*5|1|0.28|ENSG00000158201|chr18:21659223-21659230|GTTCAGTG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.5815734863281	2	422.268553	842.522553	0.072798	3.074E-05	4.2857	0.0018097	4.3585	0.0018405	422.2700566395202	96.645	0.17561	96.488	96.379	96.555	-0.15646					5	3	2	0	0	0	0.027866	1	11925	11925		15.642	0	1	26127			31264	10	21611	21651	35786	35786					0.0949927676548441
KIGYDLALQS	10	Unmodified	_KIGYDLALQS_					0	0	0			REV__ENST00000592971.1_1_19:16238799-16243111:+|nuORF	REV__ENST00000592971.1_1_19:16238799-16243111:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3060302734375	2	554.305864	1106.59717	-0.85983	-0.00047661	0.70101	0.00038857	-0.15882	-8.8034E-05	554.3061921138727	43.628	0.87193	43.628	43.15	44.022	0					77	23	4	0	0	0	0.52765	1	4121	4121		85.161	2.4103	1	3316800	+		31265	35757	21612	21652	35787	35787					0.048139947861727705
KIGYDLALQS	10	Unmodified	_KIGYDLALQS_					0	0	0			REV__ENST00000592971.1_1_19:16238799-16243111:+|nuORF	REV__ENST00000592971.1_1_19:16238799-16243111:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3055419921875	2	554.305864	1106.59717	-0.085714	-4.7512E-05	-0.086004	-4.7672E-05	-0.17172	-9.5184E-05	554.305693044405	43.741	0.98611	43.772	43.116	44.102	0.030827					80	26	5	0	0	0	0.42812	1	4052	4052		95.815	0	1	3440700	+		31266	35757	21612	21652	35788	35788					0.048139947861727705
KIHAGDEVI	9	Unmodified	_KIHAGDEVI_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;ENSG00000153721|ENST00000607772|CNKSR3;ENST00000433165.6_1_6:154727490-154754936:-|nuORF;nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2;CNKSR2|p.E968Kfs*2|1|0.27|ENSG00000149970|chrX:21652315-21652315|G/-|frameshift_variant;nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.27215576171875	2	491.271824	980.529095	-0.85296	-0.00041903	0.74218	0.00036461	-0.11078	-5.4423E-05	491.27204604851664	31.114	0.90464	30.873	30.541	31.446	-0.24109					53	22	4	0	0	0	0.59099	1	2060	2060		53.351	0	1	1654100			31267	18817	21613	21653	35789	35789					0.03805169926192775
KIHAGDEVI	9	Unmodified	_KIHAGDEVI_					0	0	0		nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;ENSG00000153721|ENST00000607772|CNKSR3;ENST00000433165.6_1_6:154727490-154754936:-|nuORF;nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2;CNKSR2|p.E968Kfs*2|1|0.27|ENSG00000149970|chrX:21652315-21652315|G/-|frameshift_variant;nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2	nc|ENSG00000288520|G9CGD6-3|CNK3	nc|ENSG00000288520|G9CGD6-3|CNK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.2725830078125	2	491.271824	980.529095	-0.046588	-2.2887E-05	-0.27601	-0.0001356	-0.3226	-0.00015848	491.27154530799555	31.061	0.93739	30.908	30.597	31.534	-0.15231					54	23	4	0	0	0	0.53979	1	2028	2028		56.721	5.5284	1	1739400			31268	18817	21613	21653	35790	35790					0.03805169926192775
KIHANFVIPT	10	Unmodified	_KIHANFVIPT_					0	0	0			REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.2725219726562	2	570.332216	1138.64988	-0.043452	-2.4782E-05	-0.28384	-0.00016188	-0.32729	-0.00018666	570.3322644063303	49.413	0.42037	49.312	49.147	49.567	-0.1008					17	10	2	0	0	0	0.03519	1	4988	4988		40.778	1.5253	1	173740	+		31269	24736	21614	21654	35791	35791					0.08609997639655376
KIHFTPLSI	9	Unmodified	_KIHFTPLSI_					0	0	0			REV__ENST00000437398.5_1_22:24807589-24807655:+|nuORF	REV__ENST00000437398.5_1_22:24807589-24807655:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7996215820312	2	528.316035	1054.61752	-0.69332	-0.00036629	-0.32261	-0.00017044	-1.0159	-0.00053673	528.8174339223543	83.766	0.43309	83.792	83.512	83.945	0.026558					16	9	2	0	0	0	0.024447	1	10380	10380		19.104	6.8967	1	94201	+		31270	32478	21615	21655	35792	35792					0.09239210236660256
KIHKFLAS	8	Unmodified	_KIHKFLAS_					0	0	0			REV__ENST00000237654.8_1_4:77969082-77969268:-|nuORF	REV__ENST00000237654.8_1_4:77969082-77969268:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2877502441406	2	472.28982	942.565087	-0.32971	-0.00015572	-4.4572	-0.0021051	-4.7869	-0.0022608	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	1.0574	1	11734	11734		24.203	0	1	42351000	+		31271	29436	21616	21656	35793	35793					0.09150671893689832
KIHKHATIE	9	Unmodified	_KIHKHATIE_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.296630859375	2	538.81419	1075.61383	-0.97143	-0.00052342	1.6612	0.00089508	0.68977	0.00037166	538.8129395402623	60.409	0.30967	60.195	60	60.31	-0.2134					9	7	2	0	0	0	0.024487	1	6928	6928		31.955	8.9124	1	51737	+		31272	28343	21617	21657	35794	35794					0.07904540462777732
KIHKVSQKV	9	Unmodified	_KIHKVSQKV_					0	0	0		ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENST00000413631.1_1_13:111590511-111591024:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.800048828125	2	533.840208	1065.66586	-0.20396	-0.00010888	-0.97166	-0.00051871	-1.1756	-0.00062759	533.8397138858295	57.256	0.57523	57.092	56.78	57.355	-0.16431					25	15	2	0	0	0	0.024477	1	6429	6429		35.618	5.1146	1	165680			31273	13846	21618	21658	35795	35795					0.13565703876543012
KIHLGRKF	8	Unmodified	_KIHLGRKF_					0	0	0			REV__ENST00000324545.8_2_X:41093181-41093415:+|nuORF	REV__ENST00000324545.8_2_X:41093181-41093415:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7404479980469	2	499.816536	997.618519	-0.30534	-0.00015261	-1.5123	-0.00075587	-1.8176	-0.00090848	499.81564243616515	41.362	0.38789	41.134	40.888	41.275	-0.2278					22	9	3	0	0	0	0.027866	1	3601	3601		19.36	4.4951	1	265320	+		31274	30375	21619	21659	35796	35796					0.11961469396226221
KIHLLNLIS	9	Unmodified	_KIHLLNLIS_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.221435546875	2	525.837134	1049.65972	-0.76416	-0.00040182	0.11011	5.7899E-05	-0.65405	-0.00034393	525.8369205802671	28.229	0.24539	28.06	27.926	28.171	-0.16897					10	5	2	0	0	0	0.024523	1	1621	1621		21.96	1.9631	1	51751	+		31275	26520	21620	21660	35797	35797					0.13687185645017053
KIHLLNLIS	9	Unmodified	_KIHLLNLIS_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.837134	1049.65972	-0.43803	-0.00023033	0.12458	6.5508E-05	-0.31345	-0.00016483	525.8371126931934	28.431	0.32046	28.279	28.04	28.36	-0.15195	0.10553	-1.337E-06	NaN	21.96	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61661	+		31276	26520	21620	21660							0.13687185645017053
KIIDAASTL	9	Unmodified	_KIIDAASTL_					0	0	0			REV__ENST00000232854.8_1_3:50606980-50608690:+|nuORF	REV__ENST00000232854.8_1_3:50606980-50608690:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2763977050781	2	466.276575	930.538597	-0.10707	-4.9923E-05	-0.012348	-5.7575E-06	-0.11942	-5.5681E-05	466.27641825006435	47.531	1.0314	47.434	47.046	48.077	-0.096649					60	27	3	0	0	0	0.27161	2	4657	4657;4670		79.451	13.648	1	4863200	+		31277	29413	21621	21661	35798;35799	35798					0.07054938211717854
KIIDAASTL	9	Unmodified	_KIIDAASTL_					0	0	0			REV__ENST00000232854.8_1_3:50606980-50608690:+|nuORF	REV__ENST00000232854.8_1_3:50606980-50608690:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2765197753906	2	466.276575	930.538597	-0.038389	-1.79E-05	-0.20653	-9.6302E-05	-0.24492	-0.0001142	466.2763373181569	47.626	0.85233	47.439	47.199	48.052	-0.18684					56	22	4	0	0	0	0.33245	1	4668	4668		71.296	5.4925	1	4451700	+		31278	29413	21621	21661	35800	35800					0.07054938211717854
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3098754882812	2	542.307875	1082.6012	0.26052	0.00014128	1.1661	0.00063239	1.4266	0.00077367	542.3086509462058	70.672	1.326	70.672	70.316	71.642	0					75	32	5	0	0	0	0.16638	3	8540	8529;8540;8553		95.815	39.886	1	10259000			31279	731;10161	21622	21662	35801;35802;35803	35802					0.06320084279923321
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3092651367188	2	542.307875	1082.6012	0.33227	0.00018019	2.0069	0.0010883	2.3391	0.0012685	542.3097617764557	71.022	1.5413	70.729	70.292	71.834	-0.29291					87	38	5	0	0	0	0.12914	3	8564	8540;8551;8564		104.06	49.28	1	9692600			31280	731;10161	21622	21662	35804;35805;35806	35806					0.06320084279923321
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.3094482421875	2	542.307875	1082.6012	-0.7424	-0.00040261	0.79821	0.00043288	0.055813	3.0268E-05	542.308178414964	70.779	1.3438	70.79	70.422	71.766	0.010735					89	33	5	0	0	0	0.025498	3	8474	8463;8474;8486		145.16	86.374	1	8773700			31281	731;10161	21622	21662	35807;35808;35809	35808					0.06320084279923321
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.3095703125	2	542.307875	1082.6012	-0.27561	-0.00014946	3.9373	0.0021352	3.6617	0.0019858	542.3103925748718	70.958	0.77809	70.701	70.468	71.246	-0.25712					29	18	3	0	0	0	0.1158	1	8274	8274		107.01	42.8	1	4240100			31282	731;10161	21622	21662	35810	35810					0.06320084279923321
KIIDFIYTA	9	Unmodified	_KIIDFIYTA_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.3095092773438	2	542.307875	1082.6012	-0.20541	-0.00011139	2.0918	0.0011344	1.8864	0.001023	542.3090998846038	70.845	1.1337	70.63	70.435	71.568	-0.21424					63	27	4	0	0	0	0.91321	1	8247	8247		31.53	3.6476	1	4104200			31283	731;10161	21622	21662	35811	35811					0.06320084279923321
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.33154296875	2	543.331882	1084.64921	-1.2774	-0.00069405	0.048994	2.662E-05	-1.2284	-0.00066743	543.3318419916137	44.678	0.89581	44.678	44.382	45.278	0					73	25	4	0	0	0	0.016953	3	4286	4277;4286;4300		152.06	28.853	1	6005500			31284	1102	21623	21663	35812;35813;35814	35813					0.11027158199931364
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3318481445312	2	543.331882	1084.64921	-1.587	-0.00086229	0.41551	0.00022576	-1.1715	-0.00063653	543.3320452222493	44.874	0.82449	44.725	44.422	45.247	-0.1488					67	23	4	0	0	0	0.014478	4	4300	4287;4300;4313;4324		164.46	41.247	1	5735800			31285	1102	21623	21663	35815;35816;35817;35818	35816					0.11027158199931364
KIIDIQEKV	9	Unmodified	_KIIDIQEKV_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3310546875	2	543.331882	1084.64921	-0.97873	-0.00053177	-0.20895	-0.00011353	-1.1877	-0.0006453	543.3316888809263	44.705	0.66187	44.742	44.476	45.138	0.036903					56	18	4	0	0	0	0.015512	3	4224	4224;4237;4250		159.28	41.465	1	5734600			31286	1102	21623	21663	35819;35820;35821	35819					0.11027158199931364
KIIEDAHNRGR	11	Unmodified	_KIIEDAHNRGR_					0	0	0		ETNPPL|p.S203R|1|0.28|ENSG00000164089|chr4:108752904-108752904|A/T|missense_variant	ETNPPL|p.S203R|1|0.28|ENSG00000164089|chr4:108752904-108752904|A/T|missense_variant	ETNPPL|p.S203R|1|0.28|ENSG00000164089|chr4:108752904-108752904|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.8811340332031	3	436.90922	1307.70583	-0.47025	-0.00020546	2.6156	0.0011428	2.1453	0.00093732	437.2432385785578	39.807	0.38073	39.83	39.562	39.942	0.023727					20	10	3	0	0	0	0.013471	1	3354	3354		91.469	8.6386	1	132720			31287	17623	21624	21664	35822	35822					0.064285988091342
KIIEYSVYL	9	Unmodified	_KIIEYSVYL_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.317626953125	2	564.320983	1126.62741	-0.75202	-0.00042438	0.71782	0.00040508	-0.034204	-1.9302E-05	564.3212362973054	66.89	1.0183	66.89	66.588	67.606	0					69	24	4	0	0	0	0.30449	1	7962	7962		75.043	11.737	1	3170900			31288	8288	21625	21665	35823	35823					0.06916353451356372
KIIEYSVYL	9	Unmodified	_KIIEYSVYL_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3178100585938	2	564.320983	1126.62741	-0.57149	-0.0003225	0.28259	0.00015947	-0.2889	-0.00016303	564.3209941593043	67.261	1.0446	66.972	66.548	67.593	-0.28834					70	25	5	0	0	0	0.16638	1	7981	7981		95.815	24.519	1	2900400			31289	8288	21625	21665	35824	35824					0.06916353451356372
KIIEYSVYL	9	Unmodified	_KIIEYSVYL_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.31298828125	2	564.320983	1126.62741	-0.66144	-0.00037327	0.50641	0.00028578	-0.15504	-8.7491E-05	564.3211446632655	67.028	1.2956	67.051	66.601	67.897	0.023911					76	31	4	0	0	0	0.30449	1	7898	7898		75.043	1.0686	1	2735300			31290	8288	21625	21665	35825	35825					0.06916353451356372
KIIFKMKF	8	Unmodified	_KIIFKMKF_					0	0	0		ENST00000425128.6_1_3:27414695-27414764:-|nuORF	ENST00000425128.6_1_3:27414695-27414764:-|nuORF	ENST00000425128.6_1_3:27414695-27414764:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.271484375	2	527.827724	1053.64089	-0.35169	-0.00018563	-1.3447	-0.00070977	-1.6964	-0.0008954	528.3273775590864	46.722	1.245	46.528	46.309	47.554	-0.19387					49	34	2	0	0	0	0.027866	1	4607	4607		8.2313	0	1	602140			31291	14059	21626	21666	35826	35826					0.11621932749631014
KIIFLQTRP	9	Unmodified	_KIIFLQTRP_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.2649536132812	2	558.350409	1114.68626	0.89724	0.00050097	-1.4295	-0.00079816	-0.53226	-0.00029719	558.3496650992645	83.083	0.47043	82.992	82.744	83.215	-0.090454					14	10	2	0	0	0	0.024374	1	10348	10348		40.778	3.6191	1	59961			31292	10590	21627	21667	35827	35827					0.1335087453635424
KIIFLQTRP	9	Unmodified	_KIIFLQTRP_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.350409	1114.68626	0.4803	0.00026818	-0.77464	-0.00043252	-0.29434	-0.00016434	558.3497226501651	82.884	0.21663	82.663	82.522	82.738	-0.22015	-0.17225	-0.00038609	NaN	40.778	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73592			31293	10590	21627	21667							0.1335087453635424
KIIFLQTRP	9	Unmodified	_KIIFLQTRP_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.350409	1114.68626	0.25696	0.00014347	-0.41703	-0.00023285	-0.16007	-8.9374E-05	558.3500370054053	82.794	0.4744	82.614	82.462	82.936	-0.18079	-0.22214	1.325E-05	NaN	40.778	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67222			31294	10590	21627	21667							0.1335087453635424
KIIFLQTRP	9	Unmodified	_KIIFLQTRP_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.350409	1114.68626	-0.57701	-0.00032217	0.13816	7.714E-05	-0.43885	-0.00024503	558.3504409486775	82.83	0.30096	82.69	82.522	82.823	-0.14014	-0.14591	0.00063323	NaN	40.778	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54729			31295	10590	21627	21667							0.1335087453635424
KIIGIMEEV	9	Unmodified	_KIIGIMEEV_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2921752929688	2	516.293911	1030.57327	-0.91875	-0.00047435	1.4483	0.00074774	0.52952	0.00027339	516.2945880478419	62.833	0.79259	62.833	62.729	63.522	0					37	20	2	0	0	0	0.32811	1	7327	7327		71.877	3.0906	1	4460200			31296	3516	21628	21668	35828	35828					0.05920438028147146
KIIGIMEEV	9	Unmodified	_KIIGIMEEV_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.29248046875	2	516.293911	1030.57327	-0.47299	-0.0002442	0.845	0.00043627	0.37201	0.00019207	516.294343817183	63.052	0.79774	62.812	62.695	63.492	-0.23926					40	20	2	0	0	0	0.17822	1	7333	7333		93.195	18.94	1	3754700			31297	3516	21628	21668	35829	35829					0.05920438028147146
KIIGVSGH	8	Unmodified	_KIIGVSGH_					0	0	0			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	2	405.745245	809.475937	-0.61608	-0.00024997	0.97485	0.00039554	0.35877	0.00014557	405.7453119724315	27.05	0.43192	26.893	26.629	27.061	-0.15664					12	9	2	0	0	0	0.027866	1	1401	1401		40.573	10.069	1	47269	+		31298	26721	21629	21669	35830	35830					0.06357836934182615
KIIHKNLN	8	Unmodified	_KIIHKNLN_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1;MCTP1-TNC|1|fusion;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;MCTP1-TNC|2|fusion	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.74310302734375	2	490.306001	978.597449	-0.21097	-0.00010344	-0.42133	-0.00020658	-0.6323	-0.00031002	490.30570344250077	31.644	0.34586	31.492	31.269	31.615	-0.15231					11	8	2	0	0	0	0.027866	1	2110	2110		30.504	2.6214	1	71840			31299	8562	21630	21670	35831	35831					0.10729459296692312
KIIHLYHH	8	Unmodified	_KIIHLYHH_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8193359375	2	530.806168	1059.59778	0.35125	0.00018645	-4.0653	-0.0021579	-3.714	-0.0019714	531.3057185343326	20.155	0.28821	19.931	19.779	20.067	-0.22344					9	5	2	0	0	0	0.027866	1	475	475		23.037	0	1	17132			31300	10426	21631	21671	35832	35832					0.07036879016550301
KIIHPHNLLK	10	Unmodified	_KIIHPHNLLK_					0	0	0			REV__ENSG00000142178|ENST00000270162|SIK1	REV__ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9228820800781	3	404.92403	1211.75026	-0.99259	-0.00040192	-2.7069	-0.0010961	-3.6995	-0.001498	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.118	1	1439	1439		20.03	0.7678	1	42819000	+		31301	24138	21632	21672	35833	35833					0.15285654693320794
KIIITGLSGV	10	Unmodified	_KIIITGLSGV_					0	0	0			REV__ENSG00000104643|ENST00000221086|MTMR9	REV__ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2780456542969	2	500.823692	999.632832	0.27017	0.00013531	-1.5162	-0.00075934	-1.246	-0.00062403	500.8226396399417	61.197	0.72223	61.197	60.807	61.529	0					47	18	4	0	0	0	0.03519	1	7018	7018		37.812	14.769	1	1806000	+		31302	21454	21633	21673	35834	35834					0.13300077033864
KIIKEFNL	8	Unmodified	_KIIKEFNL_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.81060791015625	2	502.810585	1003.60662	-0.18152	-9.1272E-05	-0.42399	-0.00021319	-0.60551	-0.00030446	502.810285499946	69.255	1.0946	69.255	68.898	69.993	0					80	26	5	0	0	0	0.56592	1	8321	8321		79.451	2.6769	1	16132000	+		31303	27972	21634	21674	35835	35835					0.10495807862366746
KIIKQVNMHSL	11	Unmodified	_KIIKQVNMHSL_					0	0	0		ENST00000476742.1_1_3:132424565-132434018:-|nuORF	ENST00000476742.1_1_3:132424565-132434018:-|nuORF	ENST00000476742.1_1_3:132424565-132434018:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2461853027344	3	437.591952	1309.75403	-0.31646	-0.00013848	3.5168	0.0015389	3.2004	0.0014005	437.59336163592656	28.36	0.93017	28.356	28.117	29.047	-0.0042019					48	21	4	0	0	0	0.024723	1	1629	1629		12.433	0	1	609010			31304	15096	21635	21675	35836	35836					0.11153956404859855
KIIKSEFQKAS	11	Unmodified	_KIIKSEFQKAS_					0	0	0			REV__ENST00000546624.2_1_12:88177101-88177509:-|nuORF	REV__ENST00000546624.2_1_12:88177101-88177509:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.3028259277344	3	426.918722	1277.73434	0.39116	0.00016699	1.7828	0.00076112	2.174	0.00092812	426.91975813859733	68.872	0.86037	68.642	68.357	69.217	-0.23047					44	20	3	0	0	0	0.024746	1	8041	8041		11.455	0	1	213950	+		31305	23379	21636	21676	35837	35837					0.10657903665764934
KIIKVGKP	8	Unmodified	_KIIKVGKP_					0	0	0			REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.7880859375	2	441.810388	881.606223	-0.46279	-0.00020446	-4.4414	-0.0019623	-4.9042	-0.0021667	441.80863179593945	41.214	0.23309	40.984	40.886	41.119	-0.23029					7	5	2	0	0	0	0.027866	1	3597	3597		19.36	1.0356	1	43004	+		31306	26963	21637	21677	35838	35838					0.1606843293318434
KIILHGAELV	10	Unmodified	_KIILHGAELV_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8099975585938	2	546.842416	1091.67028	-0.58351	-0.00031909	-2.2807	-0.0012472	-2.8642	-0.0015663	546.841309932009	54.4	0.3571	54.25	54.084	54.442	-0.15036					13	9	2	0	0	0	0.03519	1	5915	5915		9.1829	0	1	168550			31307	5346	21638	21678	35839	35839					0.1281116829943585
KIILHKEY	8	Unmodified	_KIILHKEY_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7645263671875	2	522.316035	1042.61752	-0.75508	-0.00039439	-3.5339	-0.0018458	-4.289	-0.0022402	522.3140684886071	30.147	0.49202	30.156	29.922	30.414	0.0086708					27	11	3	0	0	0	0.027866	1	1928	1928		40.573	18.613	1	228910	+		31308	20535	21639	21679	35840	35840					0.09791210236653569
KIIMPPSALD	10	Unmodified	_KIIMPPSALD_					0	0	0		ENST00000489406.1_1_22:19455337-19466647:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000489406.1_1_22:19455337-19466647:-|nuORF	ENST00000489406.1_1_22:19455337-19466647:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2575073242188	2	542.807185	1083.59982	-0.35316	-0.0001917	-2.9828	-0.0016191	-3.336	-0.0018108	542.8053804926468	46.911	0.87112	46.814	46.368	47.239	-0.096649					60	23	4	0	0	0	0.03519	1	4621	4621		27.882	0	1	1986300			31309	1412	21640	21680	35841	35841					0.06136126919477647
KIIMVLFPLK	10	Unmodified	_KIIMVLFPLK_					0	0	0			REV__ENST00000567092.1_1_16:58149929-58163019:-|nuORF	REV__ENST00000567092.1_1_16:58149929-58163019:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5595703125	3	401.262884	1200.76682	0.78411	0.00031463	-2.8709	-0.001152	-2.0868	-0.00083734	401.2611081152126	35.618	0.19876	35.405	35.274	35.472	-0.21246					6	4	2	0	0	0	0.03519	1	2709	2709		14.694	0	1	19202	+		31310	20435	21641	21681	35842	35842					0.1744701953502954
KIINNNLGID	10	Unmodified	_KIINNNLGID_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2738647460938	2	557.316763	1112.61897	-0.40996	-0.00022848	2.8796	0.0016048	2.4696	0.0013764	557.318070745298	96.528	0.42001	96.371	96.091	96.511	-0.15646					12	9	2	0	0	0	0.03519	1	11911	11911		49.442	15.269	1	55067			31311	10221	21642	21682	35843	35843					0.06716799534751772
KIIQREKD	8	Unmodified	_KIIQREKD_					0	0	0			REV__ENSG00000182473|ENST00000589210|EXOC7	REV__ENSG00000182473|ENST00000589210|EXOC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2823486328125	2	515.306198	1028.59784	-0.69835	-0.00035986	2.5646	0.0013215	1.8662	0.00096167	515.3077970612408	65.52	0.27176	65.247	65.09	65.362	-0.27282					16	7	3	0	0	0	0.027866	1	7715	7715		31.955	6.5047	1	645360	+		31312	27478	21643	21683	35844	35844					0.08468834225891442
KIIQVASLST	10	Unmodified	_KIIQVASLST_					0	0	0			REV__ELP3-MYO5C|1|fusion;REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3192138671875	2	530.324057	1058.63356	-0.29319	-0.00015548	3.9428	0.002091	3.6496	0.0019355	530.3260041404903	93.447	0.52515	93.325	93.015	93.54	-0.12215					23	11	3	0	0	0	0.03519	1	11532	11532		26.693	13.734	1	149420	+		31313	23011;19748	21644	21684	35845	35845					0.10658871682880999
KIIRMVTAC	9	Carbamidomethyl (C)	_KIIRMVTAC(Carbamidomethyl (C))_	KIIRMVTAC(1)		KIIRMVTAC(66)		0	1	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7896118164062	2	546.306829	1090.59911	-0.74754	-0.00040839	-0.75886	-0.00041457	-1.5064	-0.00082296	546.3078221033015	31.355	2.1913	31.203	30.137	32.329	-0.15231					80	53	3	0	0	0	0.023007	1	1995	1995		66.429	20.457	1	365250	+		31314	28866	21645	21685	35846	35846	377				0.057430089987747124
KIISEHLAVI	10	Unmodified	_KIISEHLAVI_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.8458251953125	2	561.847699	1121.68084	-0.10164	-5.7109E-05	-3.3286	-0.0018702	-3.4303	-0.0019273	561.8456674057395	95.47	0.99585	95.334	94.982	95.978	-0.13689					72	22	5	0	0	0	1.1307	1	11758	11758		26.693	2.1737	1	1624700			31315	9743	21646	21686	35847	35847					0.12487150953893433
KIKALEVL	8	Unmodified	_KIKALEVL_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.2891845703125	2	457.307678	912.600803	0.17182	7.8576E-05	-3.4018	-0.0015557	-3.23	-0.0014771	457.30744131200584	93.689	0.3445	93.567	93.453	93.798	-0.12215					11	7	2	0	0	0	0.027866	1	11541	11541		31.955	1.4512	1	62192			31316	4575;18273	21647	21687	35848	35848					0.14100709350691432
KIKALLERTGY	11	Unmodified	_KIKALLERTGY_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	646.3651123046875	2	646.390262	1290.76597	-2.1346	-0.0013798	-2.5805	-0.001668	-4.7151	-0.0030478	646.390400775145	46.313	0.21634	46.217	46.152	46.368	-0.096653					6	5	2	0	0	0	0.024749	1	4468	4468		16.007	0	1	77155			31317	4164;4877	21648	21688	35849	35849					0.13221896419690893
KIKASRSEP	9	Unmodified	_KIKASRSEP_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1;PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	508.298373	1014.58219	-0.25556	-0.0001299	0.15895	8.0794E-05	-0.096613	-4.9108E-05	508.2984878468922	46.7	0.57919	46.752	46.408	46.987	0.051399					34	15	3	0	0	0	0.024427	1	4596	4596		34.173	0	1	1174000			31318	18093	21649	21689	35850	35850					0.07548547708847764
KIKAVINVN	9	Unmodified	_KIKAVINVN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.21820068359375	2	499.821484	997.628415	-0.050786	-2.5384E-05	-0.04887	-2.4426E-05	-0.099656	-4.981E-05	499.82129636484615	32.474	0.29643	32.237	32.042	32.339	-0.23666					11	6	2	0	0	0	0.024457	1	2220	2220		29.15	18.284	1	73954	+		31319	25017	21650	21690	35851	35851					0.1295061261093906
KIKEIAVTV	9	Unmodified	_KIKEIAVTV_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.82379150390625	2	500.823692	999.632832	0.33156	0.00016606	-1.283	-0.00064253	-0.95139	-0.00047648	500.8229665428807	42.039	1.2797	42.039	41.722	43.002	0					105	36	4	0	0	0	0.1158	3	3836	3826;3836;3848		107.01	27.295	1	14286000			31320	4914	21651	21691	35852;35853;35854	35853					0.13300077033829893
KIKEIAVTV	9	Unmodified	_KIKEIAVTV_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8238220214844	2	500.823692	999.632832	-0.24033	-0.00012036	-0.60042	-0.0003007	-0.84075	-0.00042107	500.8233011622414	42.241	1.6476	42.109	41.753	43.4	-0.1322					118	46	5	0	0	0	0.053401	4	3853	3833;3841;3853;3866		127.46	28.981	1	12403000			31321	4914	21651	21691	35855;35856;35857;35858	35857					0.13300077033829893
KIKEIAVTV	9	Unmodified	_KIKEIAVTV_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;ENST00000461290.5_1_2:73461506-73471178:+|nuORF	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.8238830566406	2	500.823692	999.632832	-0.025585	-1.2813E-05	-0.80189	-0.0004016	-0.82747	-0.00041442	500.82321550538404	42.143	1.5505	42.169	41.857	43.408	0.026012					112	43	5	0	0	0	0.1158	3	3796	3788;3796;3808		107.01	35.13	1	13241000			31322	4914	21651	21691	35859;35860;35861	35860					0.13300077033829893
KIKERFEQM	9	Unmodified	_KIKERFEQM_					0	0	0			REV__TRIM13|p.I262M|1|0.22|ENSG00000204977|chr13:50012726-50012726|C/G|missense_variant	REV__TRIM13|p.I262M|1|0.22|ENSG00000204977|chr13:50012726-50012726|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5537414550781	3	403.553386	1207.63833	-0.19596	-7.9082E-05	0.55006	0.00022198	0.35409	0.00014289	403.55349037078935	29.579	1.3084	29.334	29.055	30.363	-0.24524					77	30	4	0	0	0	0.74711	1	1808	1808		42.864	0.52619	1	3168200	+		31323	28651	21652	21692	35862	35862					0.04281432554012099
KIKEYKLVS	9	Unmodified	_KIKEYKLVS_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3450317382812	2	554.342249	1106.66995	0.59817	0.00033159	3.2458	0.0017993	3.844	0.0021309	554.3439177557184	77.11	1.1588	76.858	76.571	77.729	-0.25163					63	28	4	0	0	0	0.26966	1	9196	9196		79.713	2.395	1	1912900	+		31324	22745	21653	21693	35863	35863					0.12087748579597246
KIKFIPSM	8	Unmodified	_KIKFIPSM_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.256103515625	2	482.288431	962.562309	0.075045	3.6193E-05	4.0097	0.0019338	4.0848	0.00197	482.29018960449196	39.212	0.45593	39.212	38.935	39.391	0					20	12	2	0	0	0	0.027866	1	3346	3346		17.365	3.5896	1	229570			31325	5969	21654	21694	35864	35864					0.07953080444531224
KIKFLQEAKI	10	Unmodified	_KIKFLQEAKI_					0	0	0		nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER;FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant;ENSG00000151422|ENST00000281092|FER	nc|ENSG00000151422|P16591-3|FER	nc|ENSG00000151422|P16591-3|FER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.7348327636719	3	406.592058	1216.75434	0.30323	0.00012329	-2.6574	-0.0010805	-2.3542	-0.0009572	406.5909849695724	22.573	0.46095	22.371	22.146	22.607	-0.20199					19	9	3	0	0	0	0.03519	1	767	767		16.717	0.71061	1	38640			31326	6200	21655	21695	35865	35865					0.15463699396354968
KIKGCFIT	8	Unmodified	_KIKGCFIT_					0	0	0			REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	REV__nc|ENSG00000131831|Q9Y5P3-2|RAI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.73980712890625	2	455.264956	908.515359	0.16615	7.5642E-05	4.2343	0.0019277	4.4004	0.0020034	455.26589563852815	75.128	0.20205	74.883	74.716	74.918	-0.24455					5	4	2	0	0	0	0.027866	1	9162	9162		7.6903	0	1	24921	+		31327	23236	21656	21696	35866	35866					0.05744220893382135
KIKHLRAS	8	Unmodified	_KIKHLRAS_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.7586975097656	2	476.806168	951.597784	0.82382	0.0003928	2.9578	0.0014103	3.7817	0.0018031	476.8070777878041	101.06	0.48997	100.93	100.73	101.22	-0.13156					14	10	2	0	0	0	0.027866	1	12523	12523		21.96	0	1	99610	+		31328	25138	21657	21697	35867	35867					0.12004879016558334
KIKINHLF	8	Unmodified	_KIKINHLF_					0	0	0			REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3311462402344	2	506.818744	1011.62294	-0.86544	-0.00043862	-3.7329	-0.0018919	-4.5984	-0.0023305	506.8167306834925	37.894	0.79764	37.926	37.264	38.062	0.032269					31	21	3	0	0	0	0.027866	1	3013	3013		20.482	6.7065	1	274000	+		31329	27348	21658	21698	35868	35868					0.1175893381912374
KIKKCMKLV	9	Unmodified	_KIKKCMKLV_					0	0	0		ENST00000471257.5_1_1:235377084-235377189:-|nuORF	ENST00000471257.5_1_1:235377084-235377189:-|nuORF	ENST00000471257.5_1_1:235377084-235377189:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.7755126953125	2	545.84559	1089.67663	-1.4219	-0.00077612	4.1014	0.0022387	2.6795	0.0014626	545.8477363699633	52.007	0.66814	52.099	51.857	52.526	0.091938					32	16	3	0	0	0	0.024457	1	5521	5521		29.15	0	1	426190			31330	14954	21659	21699	35869	35869					0.13537646934969416
KIKKGMTKL	9	Unmodified	_KIKKGMTKL_					0	0	0			REV__ENST00000475168.1_1_1:231696972-231699214:+|nuORF	REV__ENST00000475168.1_1_1:231696972-231699214:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3004150390625	2	523.841362	1045.66817	-0.7064	-0.00037004	-3.9091	-0.0020477	-4.6155	-0.0024178	523.8387605686033	52.019	0.3642	52.019	51.871	52.236	0					14	9	2	0	0	0	0.024344	1	5570	5570		54.776	0	1	82241	+		31331	33286	21660	21700	35870	35870					0.14716416290002599
KIKKGQLEV	9	Unmodified	_KIKKGQLEV_					0	0	0			REV__ENSG00000084733|ENST00000264710|RAB10	REV__ENSG00000084733|ENST00000264710|RAB10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8162231445312	2	521.834591	1041.65463	-1.4808	-0.00077274	4.2278	0.0022062	2.747	0.0014335	521.8371151537904	64.895	0.34129	64.633	64.494	64.835	-0.2626					11	8	2	0	0	0	0.024262	1	7644	7644		47.916	1.9636	1	64130	+		31332	20740	21661	21701	35871	35871					0.13546881782417586
KIKKLEAE	8	Unmodified	_KIKKLEAE_					0	0	0		DIAPH2|p.E527K|1|0.25|ENSG00000147202|chrX:96949004-96949004|G/A|missense_variant	DIAPH2|p.E527K|1|0.25|ENSG00000147202|chrX:96949004-96949004|G/A|missense_variant	DIAPH2|p.E527K|1|0.25|ENSG00000147202|chrX:96949004-96949004|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2324523925781	2	479.800217	957.585882	0.040286	1.9329E-05	-1.0115	-0.00048531	-0.9712	-0.00046598	479.79958550143766	30.979	0.24749	30.826	30.639	30.887	-0.15231					14	5	3	0	0	0	0.027866	1	1990	1990		27.882	0	1	514960			31333	639	21662	21702	35872	35872					0.10539217482687491
KIKKSVSHE	9	Unmodified	_KIKKSVSHE_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2574462890625	2	528.314023	1054.61349	-0.20964	-0.00011075	0.13774	7.277E-05	-0.071896	-3.7984E-05	528.3136751316463	44.707	0.79588	44.743	44.476	45.272	0.0369					51	22	3	0	0	0	0.024427	1	4213	4213		42.396	0	1	2808300			31334	6446	21663	21703	35873	35873					0.08837120742964544
KIKLCNSL	8	Unmodified	_KIKLCNSL_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.7693176269531	2	459.775688	917.536823	0.3833	0.00017623	3.6036	0.0016569	3.9869	0.0018331	459.77844998976104	40.321	0.2108	40.321	40.137	40.347	0					7	5	2	0	0	0	0.027866	1	3507	3507		23.042	3.6825	1	67527			31335	6202	21664	21704	35874	35874					0.07475605922115847
KIKLDVPRK	9	Unmodified	_KIKLDVPRK_					0	0	0			REV__ENSG00000164691|ENST00000367066|TAGAP	REV__ENSG00000164691|ENST00000367066|TAGAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.8639526367188	2	548.863683	1095.71281	1.3921	0.00076406	-1.5499	-0.00085067	-0.1578	-8.661E-05	548.862707602387	36.575	1.1915	36.376	35.742	36.934	-0.19829					78	30	4	0	0	0	0.17822	1	2869	2869		93.195	10.955	1	1684300	+		31336	25792	21665	21705	35875	35875					0.16878563427690096
KIKLKSSEL	9	Unmodified	_KIKLKSSEL_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.33447265625	2	523.334424	1044.6543	-0.33003	-0.00017271	0.099376	5.2007E-05	-0.23065	-0.00012071	523.334341165863	27.054	0.97871	26.886	26.55	27.528	-0.16816					59	22	4	0	0	0	0.016758	1	1458	1458		153.04	27.222	1	1483900			31337	4169	21666	21706	35876	35876					0.1337546206254956
KIKLKSSEL	9	Unmodified	_KIKLKSSEL_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.334228515625	2	523.334424	1044.6543	-0.227	-0.0001188	-0.018783	-9.83E-06	-0.24578	-0.00012863	523.3343178483234	27.239	0.84694	27.083	26.758	27.605	-0.15664					54	19	4	0	0	0	0.23085	1	1453	1453		84.916	0	1	1607700			31338	4169	21666	21706	35877	35877					0.1337546206254956
KIKLLPDEEVV	11	Unmodified	_KIKLLPDEEVV_					0	0	0		nc|ENSG00000142606|Q495T6-2|MMEL1;ENSG00000142606|ENST00000378412|MMEL1;nc|ENSG00000142606|Q495T6-3|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8821411132812	2	641.884478	1281.7544	-2.5036	-0.001607	-0.82685	-0.00053074	-3.3304	-0.0021377	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.0017	1	11632	11632		36.447	7.2767	1	1400600			31339	5573	21667	21707	35878	35878					0.12479654605658652
KIKPKVVS	8	Unmodified	_KIKPKVVS_					0	0	0		nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2873229980469	2	449.807845	897.601138	-0.89333	-0.00040183	1.0906	0.00049057	0.19729	8.8743E-05	449.80823509866224	37.298	0.50444	37.079	36.807	37.311	-0.2195					21	12	3	0	0	0	0.027866	1	2957	2957		24.203	16.512	1	117320			31340	18588	21668	21708	35879	35879					0.1482412907056414
KIKPSGYEL	9	Unmodified	_KIKPSGYEL_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.796875	2	517.797675	1033.5808	-0.070643	-3.6579E-05	0.57629	0.0002984	0.50564	0.00026182	517.7980634425576	58.176	0.87744	58.176	57.91	58.787	0					68	23	4	0	0	0	0.047345	2	6581	6581;6592		129.68	19.831	1	5279900	+		31341	36956	21669	21709	35880;35881	35880					0.06534913620089355
KIKPSGYEL	9	Unmodified	_KIKPSGYEL_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.7972412109375	2	517.797675	1033.5808	-0.61168	-0.00031672	1.2529	0.00064877	0.64126	0.00033204	517.7983064430339	58.411	0.90948	58.224	57.919	58.829	-0.18705					57	24	4	0	0	0	0.12602	2	6572	6572;6602		104.75	5.3716	1	5574000	+		31342	36956	21669	21709	35882;35883	35882					0.06534913620089355
KIKQSTRN	8	Unmodified	_KIKQSTRN_					0	0	0		ENST00000540226.1_1_12:215852-215996:-|nuORF	ENST00000540226.1_1_12:215852-215996:-|nuORF	ENST00000540226.1_1_12:215852-215996:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7909240722656	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	1.0574	1	10359	10359		25.45	25.45	1	2003200			31343	16417	21670	21710	35884	35884					0.0790368091164737
KIKSFEVVF	9	Unmodified	_KIKSFEVVF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.K141Tfs*4|1|0.32|ENSG00000265972|chr1:145995192-145995195|TTTC/-|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.8218994140625	2	548.823692	1095.63283	-0.56487	-0.00031001	0.11614	6.3742E-05	-0.44872	-0.00024627	548.8236517504754	57.038	1.0888	56.871	56.597	57.686	-0.1672					79	28	4	0	0	0	0.32064	3	6204	6193;6204;6218		72.879	19.943	1	5139700			31344	10971	21671	21711	35885;35886;35887	35886					0.0888407703384928
KIKSFEVVF	9	Unmodified	_KIKSFEVVF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.K141Tfs*4|1|0.32|ENSG00000265972|chr1:145995192-145995195|TTTC/-|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.8209228515625	2	548.823692	1095.63283	0.17424	9.5628E-05	-0.65567	-0.00035985	-0.48143	-0.00026422	548.8232247771191	57.071	1.1047	56.869	56.557	57.662	-0.20208					79	29	4	0	0	0	0.247	3	6199	6199;6210;6221		82.75	29.814	1	6133900			31345	10971	21671	21711	35888;35889;35890	35888					0.0888407703384928
KIKSFEVVF	9	Unmodified	_KIKSFEVVF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.K141Tfs*4|1|0.32|ENSG00000265972|chr1:145995192-145995195|TTTC/-|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.8224487304688	2	548.823692	1095.63283	-0.25317	-0.00013895	-0.22793	-0.00012509	-0.4811	-0.00026404	548.823461295308	57.122	1.0902	56.897	56.582	57.672	-0.22479					82	28	4	0	0	0	0.43628	1	6203	6203		63.534	4.7519	1	5297500			31346	10971	21671	21711	35891	35891					0.0888407703384928
KIKTPKPPKMD	11	Unmodified	_KIKTPKPPKMD_					0	0	0			REV__CTCF|p.N248D|1|0.25|ENSG00000102974|chr16:67611574-67611574|A/G|missense_variant	REV__CTCF|p.N248D|1|0.25|ENSG00000102974|chr16:67611574-67611574|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8826904296875	2	641.881216	1281.74788	-1.4215	-0.00091243	3.3631	0.0021587	1.9417	0.0012463	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.013	2	11889	11889;11985		33.922	6.8639	1	3558500	+		31347	19624	21672	21712	35892;35893	35892					0.1182743817332721
KIKVGPKV	8	Unmodified	_KIKVGPKV_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7475891113281	2	434.802563	867.590573	-0.2439	-0.00010605	-2.1384	-0.00092979	-2.3823	-0.0010358	434.80184714873434	65.222	0.40307	65.222	65.091	65.494	0					15	11	3	0	0	0	0.027866	1	7710	7710		50.025	9.4519	1	215070			31348	4231	21673	21713	35894	35894					0.15148146416129293
KIKVGPKV	8	Unmodified	_KIKVGPKV_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.74798583984375	2	434.802563	867.590573	0.10979	4.7735E-05	-3.3946	-0.001476	-3.2848	-0.0014283	434.80116654868254	65.131	0.34172	65.169	65.081	65.422	0.037384					12	9	2	0	0	0	0.027866	1	7638	7638		31.955	14.59	1	187210			31349	4231	21673	21713	35895	35895					0.15148146416129293
KIKVGPKV	8	Unmodified	_KIKVGPKV_					0	0	0		nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740-4|MASP1;nc|ENSG00000127241|P48740|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-3|MASP1	nc|ENSG00000127241|P48740-3|MASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7480163574219	2	434.802563	867.590573	0.31525	0.00013707	-0.021187	-9.2123E-06	0.29406	0.00012786	434.8023370700276	65.767	0.53059	65.797	65.552	66.082	0.030098					25	13	3	0	0	0	0.027866	1	7710	7710		30.504	5.0535	1	259970			31350	4231	21673	21713	35896	35896					0.15148146416129293
KIKVPTSL	8	Unmodified	_KIKVPTSL_					0	0	0		ENST00000594708.1_1_9:72809421-72833242:-|nuORF	ENST00000594708.1_1_9:72809421-72833242:-|nuORF	ENST00000594708.1_1_9:72809421-72833242:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.29180908203125	2	443.292028	884.569503	-0.12413	-5.5025E-05	0.21496	9.529E-05	0.090831	4.0265E-05	443.2919671893481	28.171	1.1726	28.019	27.482	28.655	-0.15195					60	28	3	0	0	0	0.96769	1	1613	1613		42.396	0	1	1410800			31351	17409	21674	21714	35897	35897					0.12260136316615444
KIKVPVDW	8	Unmodified	_KIKVPVDW_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.79901123046875	2	492.797478	983.580402	0.39198	0.00019317	-1.1104	-0.0005472	-0.71841	-0.00035403	492.7968365472655	52.803	0.8635	52.544	52.249	53.112	-0.25838					45	21	3	0	0	0	0.56592	1	5509	5509		79.451	26.514	1	841450			31352	4991	21675	21715	35898	35898					0.08795538690890226
KIKVPVDW	8	Unmodified	_KIKVPVDW_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.7980651855469	2	492.797478	983.580402	0.018837	9.2829E-06	-0.41015	-0.00020212	-0.39132	-0.00019284	492.7971923181834	52.693	1.1019	52.504	52.106	53.208	-0.18981					39	27	2	0	0	0	0.77775	1	5472	5472		60.972	9.6365	1	820120			31353	4991	21675	21715	35899	35899					0.08795538690890226
KIKVVQCL	8	Unmodified	_KIKVVQCL_					0	0	0			REV__ENSG00000118900|ENST00000262376|UBN1	REV__ENSG00000118900|ENST00000262376|UBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.8082580566406	2	465.793881	929.573209	0.36769	0.00017127	1.7003	0.00079198	2.068	0.00096324	465.7941130274497	21.315	0.19506	21.138	20.967	21.162	-0.17721					5	3	2	0	0	0	0.027866	1	642	642		20.482	1.1219	1	11420	+		31354	22429	21676	21716	35900	35900					0.10560482818812034
KIKYPENFF	9	Unmodified	_KIKYPENFF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.3185424804688	2	593.318774	1184.623	-1.4356	-0.00085175	1.255	0.00074461	-0.18056	-0.00010713	593.3194072932781	55.537	1.6404	55.381	55.046	56.687	-0.15656					114	43	5	0	0	0	0.020687	2	5962	5962;5987		148.99	33.528	1	8645600			31355	10514;9536;8287	21677	21717	35901;35902	35901					0.038068890284421286
KIKYPENFF	9	Unmodified	_KIKYPENFF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.3189086914062	2	593.318774	1184.623	-0.83666	-0.00049641	0.51836	0.00030755	-0.3183	-0.00018886	593.3190130198508	55.571	1.3394	55.355	55.012	56.351	-0.21607					109	36	5	0	0	0	0.015752	4	5979	5958;5968;5979;5993		158.07	64.879	1	9502100			31356	10514;9536;8287	21677	21717	35903;35904;35905;35906	35905					0.038068890284421286
KIKYPENFF	9	Unmodified	_KIKYPENFF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.318115234375	2	593.318774	1184.623	-1.168	-0.000693	0.88303	0.00052392	-0.28497	-0.00016908	593.3192258607958	55.547	1.6272	55.332	55.003	56.631	-0.21551					121	43	5	0	0	0	0.014918	5	5941	5941;5952;5961;5973;5987		162.25	69.057	1	8882400			31357	10514;9536;8287	21677	21717	35907;35908;35909;35910;35911	35907					0.038068890284421286
KILATSKDSK	10	Unmodified	_KILATSKDSK_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2952270507812	2	545.826963	1089.63937	-0.94198	-0.00051416	-1.4606	-0.00079725	-2.4026	-0.0013114	545.8261868980326	57.498	0.81814	57.264	56.805	57.624	-0.23363					45	21	3	0	0	0	0.03519	1	6306	6306		36.447	15.5	1	298910			31358	9025	21678	21718	35912	35912					0.09813970194568356
KILDLETQL	9	Unmodified	_KILDLETQL_					0	0	0		ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.8164672851562	2	536.816064	1071.61758	0.064231	3.448E-05	-1.3193	-0.00070822	-1.2551	-0.00067374	536.8153897912342	65.585	0.8187	65.585	65.326	66.145	0					67	21	4	0	0	0	0.013442	4	7793	7773;7781;7793;7806		218.73	37.861	1	13535000			31359	5047	21679	21719	35913;35914;35915;35916	35915					0.08463165446005405
KILDLETQL	9	Unmodified	_KILDLETQL_					0	0	0		ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.8165283203125	2	536.816064	1071.61758	-0.50522	-0.00027121	-1.171	-0.0006286	-1.6762	-0.00089981	536.8154391328045	66.051	0.92933	65.778	65.33	66.26	-0.27282					78	24	5	0	0	0	0.013442	4	7817	7794;7806;7811;7817		218.73	37.861	1	13911000			31360	5047	21679	21719	35917;35918;35919;35920	35920					0.08463165446005405
KILDLETQL	9	Unmodified	_KILDLETQL_					0	0	0		ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	ENST00000488909.1_1_9:131260677-131262531:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.8161010742188	2	536.816064	1071.61758	-0.67938	-0.0003647	-0.85028	-0.00045645	-1.5297	-0.00082115	536.8155074693825	65.696	0.74361	65.733	65.422	66.166	0.037376					58	19	4	0	0	0	0.015077	5	7695	7695;7704;7715;7721;7727		204.42	37.196	1	12811000			31361	5047	21679	21719	35921;35922;35923;35924;35925	35921					0.08463165446005405
KILDVLEEI	9	Unmodified	_KILDVLEEI_					0	0	0		ENST00000492549.5_1_7:123190514-123197849:-|nuORF;ENST00000567995.1_1_16:47632668-47632902:-|nuORF;nc|ENSG00000128609|Q16718-2|NDUFA5;ENSG00000128609|ENST00000355749|NDUFA5	ENST00000492549.5_1_7:123190514-123197849:-|nuORF	ENST00000492549.5_1_7:123190514-123197849:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3182983398438	2	536.31844	1070.62233	-0.8746	-0.00046906	0.14762	7.9171E-05	-0.72698	-0.00038989	536.318407821238	80.271	1.7585	80.271	79.953	81.711	0					86	42	4	0	0	0	0.025498	2	9964	9964;9977		145.16	46.526	1	1320400			31362	4304	21680	21720	35926;35927	35926					0.08984049588775633
KILDVLEEI	9	Unmodified	_KILDVLEEI_					0	0	0		ENST00000492549.5_1_7:123190514-123197849:-|nuORF;ENST00000567995.1_1_16:47632668-47632902:-|nuORF;nc|ENSG00000128609|Q16718-2|NDUFA5;ENSG00000128609|ENST00000355749|NDUFA5	ENST00000492549.5_1_7:123190514-123197849:-|nuORF	ENST00000492549.5_1_7:123190514-123197849:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3185424804688	2	536.31844	1070.62233	-1.4142	-0.00075846	0.65115	0.00034923	-0.76304	-0.00040923	536.3186777851122	80.456	1.5554	80.304	80.008	81.563	-0.15168					95	37	6	0	0	0	0.062622	2	9967	9955;9967		124.08	46.763	1	1050600			31363	4304	21680	21720	35928;35929	35929					0.08984049588775633
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;nc|ENSG00000134352|P40189-3|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3099365234375	2	547.310615	1092.60668	-0.2341	-0.00012813	-0.72635	-0.00039754	-0.96045	-0.00052566	547.3100524475716	67.663	1.0066	67.663	67.326	68.332	0					74	25	5	0	0	0	0.015752	3	8094	8070;8081;8094		158.07	51.067	1	6778600			31364	4788	21681	21721	35930;35931;35932	35932					0.0640776307170654
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;nc|ENSG00000134352|P40189-3|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3101196289062	2	547.310615	1092.60668	-0.42186	-0.00023089	-0.26808	-0.00014672	-0.68994	-0.00037761	547.3103147564788	68.056	0.9412	67.767	67.429	68.371	-0.28834					69	23	4	0	0	0	0.041068	3	8108	8093;8108;8120		132.76	45.004	1	6755200			31365	4788	21681	21721	35933;35934;35935	35934					0.0640776307170654
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;nc|ENSG00000134352|P40189-3|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3106689453125	2	547.310615	1092.60668	-0.4009	-0.00021942	-0.43569	-0.00023846	-0.83659	-0.00045788	547.3101770457672	67.806	0.85114	67.825	67.425	68.276	0.018921					63	21	5	0	0	0	0.041068	4	8030	8006;8016;8030;8042		132.76	48.991	1	5705600			31366	4788	21681	21721	35936;35937;35938;35939	35938					0.0640776307170654
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;nc|ENSG00000134352|P40189-3|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3106689453125	2	547.310615	1092.60668	0.6498	0.00035564	-0.81908	-0.00044829	-0.16928	-9.2649E-05	547.3100403776555	68.055	0.97566	67.8	67.455	68.431	-0.25516					75	23	5	0	0	0	0.041068	4	7851	7829;7839;7851;7865		132.76	41.981	1	4266400			31367	4788	21681	21721	35940;35941;35942;35943	35942					0.0640776307170654
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;nc|ENSG00000134352|P40189-3|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.310546875	2	547.310615	1092.60668	0.14565	7.9715E-05	-0.2557	-0.00013995	-0.11006	-6.0234E-05	547.3103399492783	68.01	0.88633	67.776	67.513	68.399	-0.23376					74	21	5	0	0	0	0.013065	4	7846	7837;7846;7858;7879		171.53	83.778	1	4215100			31368	4788	21681	21721	35944;35945;35946;35947	35945					0.0640776307170654
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant;nc|ENSG00000134352|P40189-3|IL6ST;ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3108520507812	2	547.310615	1092.60668	-0.1743	-9.5396E-05	-0.062624	-3.4275E-05	-0.23692	-0.00012967	547.3104844931121	67.965	0.96815	67.727	67.422	68.39	-0.23814					76	23	5	0	0	0	0.013065	4	7841	7817;7828;7841;7855		171.53	80.755	1	5537000			31369	4788	21681	21721	35948;35949;35950;35951	35950					0.0640776307170654
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2919616699219	2	486.292225	970.569897	0.86071	0.00041855	-1.6345	-0.00079486	-0.77382	-0.0003763	486.29141327896167	59.829	1.5878	59.829	59.257	60.845	0					113	42	5	0	0	0	0.091713	3	6859	6847;6859;6871		113.41	31.107	1	28486000			31370	1867	21682	21722	35952;35953;35954	35953					0.08343511245811897
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2919006347656	2	486.292225	970.569897	-0.35508	-0.00017267	-0.38657	-0.00018798	-0.74165	-0.00036066	486.2919999455696	60.048	1.7195	59.848	59.281	61	-0.20016					130	45	6	0	0	0	0.16638	4	6851	6851;6863;6874;6887		95.815	31.608	1	23652000			31371	1867	21682	21722	35955;35956;35957;35958	35955					0.08343511245811897
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2922668457031	2	486.292225	970.569897	-1.0516	-0.0005114	0.37147	0.00018064	-0.68016	-0.00033075	486.29234932981416	59.764	1.794	59.85	59.206	61	0.085682					123	47	5	0	0	0	0.14024	3	6776	6753;6765;6776		101.6	37.393	1	19443000			31372	1867	21682	21722	35959;35960;35961	35961					0.08343511245811897
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.29217529296875	2	486.292225	970.569897	0.5053	0.00024572	-1.1841	-0.0005758	-0.67877	-0.00033008	486.2916149437439	60.126	1.885	59.929	59.214	61.099	-0.19742					133	47	5	0	0	0	0.082191	4	6650	6650;6660;6672;6683		116.9	45.608	1	21586000			31373	1867	21682	21722	35962;35963;35964;35965	35962					0.08343511245811897
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.2915344238281	2	486.292225	970.569897	-0.032164	-1.5641E-05	-0.64148	-0.00031195	-0.67365	-0.00032759	486.29188217519743	60.043	1.6756	59.867	59.321	60.997	-0.1761					133	42	5	0	0	0	0.17822	3	6649	6649;6659;6671		93.195	20.742	1	22728000			31374	1867	21682	21722	35966;35967;35968	35966					0.08343511245811897
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.2919921875	2	486.292225	970.569897	-0.074013	-3.5992E-05	-0.64668	-0.00031447	-0.72069	-0.00035047	486.2918595391534	60.172	1.8467	59.923	59.09	60.936	-0.24842					149	46	5	0	0	0	0.082191	4	6678	6645;6654;6666;6678		116.9	24.011	1	18768000			31375	1867	21682	21722	35969;35970;35971;35972	35972					0.08343511245811897
KILEPDPV	8	Unmodified	_KILEPDPV_					0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.8883361816406	2	455.765843	909.517133	-0.56184	-0.00025607	-4.4309	-0.0020194	-4.9927	-0.0022755	455.7635332091771	37.751	0.13543	37.751	37.667	37.803	0					5	3	2	0	0	0	0.027866	1	3095	3095		47.916	17.412	1	65394	+		31376	20510	21683	21723	35973	35973					0.05875553182988824
KILEVLRELPV	11	Unmodified	_KILEVLRELPV_					0	0	0		nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30;ENST00000461003.5_1_1:161022982-161039420:-|nuORF;nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-4|ARHGAP30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.88140869140625	3	436.946501	1307.81767	0.47999	0.00020973	1.8957	0.00082832	2.3757	0.0010381	436.9473428893249	39.441	0.33754	39.441	39.323	39.661	0					13	9	2	0	0	0	0.02473	1	3385	3385		89.029	20.183	1	47376			31377	9556	21684	21724	35974	35974					0.1760764011360152
KILFAVLL	8	Unmodified	_KILFAVLL_					0	0	0			REV__ENST00000459971.1_1_22:17565981-17578023:+|nuORF	REV__ENST00000459971.1_1_22:17565981-17578023:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.7872314453125	2	458.815139	915.615725	-0.19624	-9.0039E-05	4.1104	0.0018859	3.9141	0.0017959	458.8168422083938	92.464	0.24214	92.342	92.221	92.464	-0.12241					8	5	2	0	0	0	0.027866	1	11361	11361		19.36	0	1	32261	+		31378	32837	21685	21725	35975	35975					0.1545420121871075
KILFGALVV	9	Unmodified	_KILFGALVV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7660217285156	2	480.318046	958.621539	-0.28559	-0.00013718	0.2267	0.00010889	-0.058896	-2.8289E-05	480.3179531108968	78.376	1.3592	78.392	78.155	79.514	0.015907					53	32	3	0	0	0	0.024487	1	9734	9734		31.955	5.1588	1	527350			31379	1177	21686	21726	35976	35976					0.14057299730382056
KILFGALVV	9	Unmodified	_KILFGALVV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.318046	958.621539	0.23599	0.00011335	0.016349	7.8528E-06	0.25234	0.0001212	480.3178311333983	78.303	1.0779	78.303	78.082	79.16	0	0.091359	0.00018098	NaN	31.955	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454840			31380	1177	21686	21726							0.14057299730382056
KILFGALVV	9	Unmodified	_KILFGALVV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.318046	958.621539	0.28251	0.0001357	-0.33807	-0.00016238	-0.055557	-2.6685E-05	480.3176678350747	78.319	0.72961	78.087	77.834	78.563	-0.23141	-0.12485	-0.00015949	NaN	31.955	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324980			31381	1177	21686	21726							0.14057299730382056
KILFGALVV	9	Unmodified	_KILFGALVV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.318046	958.621539	0.23194	0.0001114	-0.30116	-0.00014465	-0.069226	-3.325E-05	480.3175987964499	78.225	0.64343	78.069	77.827	78.47	-0.15591	-0.14288	-0.00012403	NaN	31.955	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274950			31382	1177	21686	21726							0.14057299730382056
KILFQLHSII	10	Unmodified	_KILFQLHSII_					0	0	0			REV__ENSG00000144362|ENST00000359744|PHOSPHO2;REV__PHOSPHO2|p.D230H|1|0.14|ENSG00000144362|chr2:169701659-169701659|G/C|missense_variant	REV__ENSG00000144362|ENST00000359744|PHOSPHO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.5682373046875	3	404.588536	1210.74378	0.36302	0.00014687	1.3618	0.00055096	1.7248	0.00069783	404.58896267807575	42.037	1.2888	41.905	41.603	42.892	-0.13219					96	36	3	0	0	0	0.03519	1	3863	3863		20.837	0	1	1001400	+		31383	24329;37371	21687	21727	35977	35977					0.14683716741956232
KILGNRVAE	9	Unmodified	_KILGNRVAE_					0	0	0		nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149	nc|ENSG00000181982|Q6ZUS6-6|CCDC149	nc|ENSG00000181982|Q6ZUS6-6|CCDC149	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7744445800781	2	500.300916	998.587279	-0.42272	-0.00021149	0.59147	0.00029592	0.16875	8.4428E-05	500.29984794871416	29.916	0.59645	29.672	29.482	30.079	-0.24415					37	13	5	0	0	0	0.024261	1	1898	1898		45.972	0	1	519050			31384	9087	21688	21728	35978	35978					0.08792851571467963
KILGVHCL	8	Unmodified	_KILGVHCL_					0	0	0		ENSG00000129696|ENST00000431156|TTI2;TTI2|p.A295Cfs*46|1|0.4|ENSG00000129696|chr8:33507273-33507274|-/A|frameshift_variant	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.7876892089844	2	441.765123	881.515694	-0.47606	-0.00021031	-1.4119	-0.00062371	-1.8879	-0.00083402	441.7648791129134	41.214	0.15517	40.984	40.886	41.041	-0.23029					5	3	2	0	0	0	0.027866	1	3609	3609		29.842	25.525	1	46087			31385	4367	21689	21729	35979	35979					0.07019640613236788
KILHSRQS	8	Unmodified	_KILHSRQS_					0	0	0			REV__ENSG00000197863|ENST00000356725|ZNF790	REV__ENSG00000197863|ENST00000356725|ZNF790	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7745361328125	2	484.785433	967.556313	-0.5694	-0.00027603	1.047	0.00050758	0.47762	0.00023154	484.78554578320643	26.19	1.0843	26.167	25.609	26.694	-0.023088					50	25	3	0	0	0	0.027866	1	1227	1227		29.15	7.1897	1	866390	+		31386	28354	21690	21730	35980	35980					0.07123698257237265
KILHTTYPKL	10	Unmodified	_KILHTTYPKL_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.23907470703125	3	405.248291	1212.72304	0.78141	0.00031666	4.413	0.0017884	5.1944	0.002105	405.2506781664401	27.166	0.36839	27.166	26.993	27.361	0					20	9	3	0	0	0	0.03519	1	1488	1488		41.427	2.7125	1	173790	+		31387	36427	21691	21731	35981	35981					0.12519126362280986
KILHYLPY	8	Unmodified	_KILHYLPY_					0	0	0			REV__ENSG00000123607|ENST00000243344|TTC21B	REV__ENSG00000123607|ENST00000243344|TTC21B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2581176757812	2	523.805303	1045.59605	-0.46406	-0.00024308	-0.21107	-0.00011056	-0.67513	-0.00035364	523.8049715366622	21.54	1.4435	21.611	21.254	22.697	0.071487					22	12	3	0	0	0	0.027866	1	726	726		28.254	1.4582	1	85879	+		31388	22711	21692	21732	35982	35982					0.07507825207949281
KILHYLPY	8	Unmodified	_KILHYLPY_					0	0	0			REV__ENSG00000123607|ENST00000243344|TTC21B	REV__ENSG00000123607|ENST00000243344|TTC21B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2581176757812	2	523.805303	1045.59605	-1.1118	-0.00058238	-0.24307	-0.00012732	-1.3549	-0.00070971	523.8050676526293	22.204	0.86367	22.277	21.882	22.745	0.073956					28	17	2	0	0	0	0.027866	1	726	726		28.254	1.4582	1	66128	+		31389	22711	21692	21732	35983	35983					0.07507825207949281
KILIFVCLM	9	Unmodified	_KILIFVCLM_					0	0	0		ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7485961914062	2	540.321417	1078.62828	-1.4703	-0.00079444	-2.1744	-0.0011749	-3.6447	-0.0019693	540.3203441783245	39.472	0.4534	39.373	39.163	39.616	-0.098751					16	12	2	0	0	0	0.024541	1	3353	3353		25.45	13.939	1	117610			31390	4306	21693	21733	35984	35984					0.09211153295063923
KILIFVCLM	9	Unmodified	_KILIFVCLM_					0	0	0		ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.321417	1078.62828	-0.30488	-0.00016473	-3.3046	-0.0017855	-3.6094	-0.0019503	540.3195501278163	39.462	0.37244	39.462	39.288	39.661	0	-0.077896	-0.00098053	NaN	31.955	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124850			31391	4306	21693	21733							0.09211153295063923
KILIFVCLM	9	Unmodified	_KILIFVCLM_					0	0	0		ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.321417	1078.62828	-1.5025	-0.00081186	-1.7752	-0.00095916	-3.2777	-0.001771	540.3203948321299	39.762	0.45228	39.785	39.526	39.978	0.023727	0.24523	0.0006722	NaN	31.955	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108750			31392	4306	21693	21733							0.09211153295063923
KILIQLDEL	9	Unmodified	_KILIQLDEL_					0	0	0			REV__ENSG00000100412|ENST00000216254|ACO2	REV__ENSG00000100412|ENST00000216254|ACO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.8341674804688	2	542.834257	1083.65396	-0.2526	-0.00013712	0.91084	0.00049444	0.65825	0.00035732	542.8345807951765	71.116	1.0001	70.859	70.564	71.564	-0.25712					55	23	4	0	0	0	0.48817	1	8310	8310		60.118	3.6845	1	1987100	+		31393	21112	21694	21734	35985	35985					0.11548042342701592
KILITYINA	9	Unmodified	_KILITYINA_					0	0	0		nc|ENSG00000164125|Q6UWH4-2|GASK1B;ENSG00000164125|ENST00000585682|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.251953125	2	524.823692	1047.63283	-0.56198	-0.00029494	0.49835	0.00026154	-0.063637	-3.3398E-05	524.8237350872288	53.475	0.50772	53.348	53.066	53.574	-0.12705					26	13	3	0	0	0	0.024257	1	5618	5618		67.494	28.688	1	687040			31394	7221	21695	21735	35986	35986					0.11092077033845271
KILITYINA	9	Unmodified	_KILITYINA_					0	0	0		nc|ENSG00000164125|Q6UWH4-2|GASK1B;ENSG00000164125|ENST00000585682|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2518310546875	2	524.823692	1047.63283	-0.1443	-7.5733E-05	-0.18254	-9.5802E-05	-0.32684	-0.00017154	524.8234562284489	53.687	0.55375	53.442	53.163	53.717	-0.2453					26	15	2	0	0	0	0.024283	1	5641	5641		65.465	31.293	1	747010			31395	7221	21695	21735	35987	35987					0.11092077033845271
KILITYINA	9	Unmodified	_KILITYINA_					0	0	0		nc|ENSG00000164125|Q6UWH4-2|GASK1B;ENSG00000164125|ENST00000585682|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.823692	1047.63283	-0.68654	-0.00036031	0.3382	0.0001775	-0.34834	-0.00018282	524.8236807281893	53.499	0.74287	53.499	53.267	54.01	0	0.065888	0.00022758	NaN	67.494	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	648290			31396	7221	21695	21735							0.11092077033845271
KILITYINA	9	Unmodified	_KILITYINA_					0	0	0		nc|ENSG00000164125|Q6UWH4-2|GASK1B;ENSG00000164125|ENST00000585682|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.823692	1047.63283	-0.84944	-0.00044581	0.54076	0.00028381	-0.30868	-0.000162	524.8237791074844	53.622	0.54546	53.474	53.239	53.784	-0.14723	0.041048	0.0004402	NaN	67.494	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	697830			31397	7221	21695	21735							0.11092077033845271
KILITYINA	9	Unmodified	_KILITYINA_					0	0	0		nc|ENSG00000164125|Q6UWH4-2|GASK1B;ENSG00000164125|ENST00000585682|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.823692	1047.63283	-0.56334	-0.00029565	0.039045	2.0492E-05	-0.52429	-0.00027516	524.823559302461	53.37	0.78197	53.466	53.092	53.874	0.095669	0.032315	-8.6426E-05	NaN	67.494	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733840			31398	7221	21695	21735							0.11092077033845271
KILKAVVH	8	Unmodified	_KILKAVVH_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.25537109375	2	454.308013	906.601472	0.31243	0.00014194	-0.0736	-3.3437E-05	0.23883	0.0001085	454.30779688544334	45.766	0.30569	45.766	45.613	45.919	0					14	8	2	0	0	0	0.027866	1	4451	4451		25.45	0	1	204490	+		31399	21675	21696	21736	35988	35988					0.14443548790416116
KILKAVVH	8	Unmodified	_KILKAVVH_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	454.308013	906.601472	0.0092604	4.2071E-06	-0.03866	-1.7564E-05	-0.0294	-1.3357E-05	454.3078972714761	45.763	0.24385	45.806	45.681	45.925	0.043877	0.020016	1.4207E-05	NaN	12.207	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150970	+		31400	21675	21696	21736							0.14443548790416116
KILKEKGYAT	10	Unmodified	_KILKEKGYAT_					0	0	0		ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8438720703125	2	575.845156	1149.67576	0.36839	0.00021213	-3.6636	-0.0021097	-3.2953	-0.0018976	575.8429202479575	102.65	0.55697	102.52	102.23	102.79	-0.12931					33	12	4	0	0	0	1.1333	1	12762	12762		28.081	1.3886	1	490120			31401	6593	21697	21737	35989	35989					0.10690847091291289
KILKISYKRSN	11	Unmodified	_KILKISYKRSN_					0	0	0		ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000079819|O43491-3|EPB41L2	ENSG00000088367|ENST00000338074|EPB41L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.74359130859375	3	450.613633	1348.81907	-0.20959	-9.4445E-05	2.2328	0.0010062	2.0233	0.00091171	450.6146390567271	27.098	0.47974	27.085	26.911	27.391	-0.012983					33	12	4	0	0	0	0.024823	1	1469	1469		11.455	0	1	321540			31402	1869;1676	21698	21738	35990	35990					0.15861274202370623
KILKMTLEL	9	Unmodified	_KILKMTLEL_					0	0	0		ENST00000457761.6_1_2:172803236-172821866:+|nuORF;ENST00000494601.5_1_2:172803236-172809427:+|nuORF	ENST00000457761.6_1_2:172803236-172821866:+|nuORF	ENST00000457761.6_1_2:172803236-172821866:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.839111328125	2	544.841028	1087.6675	-0.52911	-0.00028828	-3.2589	-0.0017756	-3.788	-0.0020639	544.8390947341879	73.138	0.94149	72.867	72.596	73.538	-0.27126					71	23	5	0	0	0	0.19099	1	8895	8895		90.37	7.6193	1	2697400			31403	14615	21699	21739	35991	35991					0.12717576850309342
KILLEAKP	8	Unmodified	_KILLEAKP_					0	0	0			REV__ENSG00000146950|ENST00000380913|SHROOM2	REV__ENSG00000146950|ENST00000380913|SHROOM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.7823486328125	2	456.299853	910.585153	0.2359	0.00010764	1.7774	0.00081103	2.0133	0.00091868	456.3005503644791	49.388	0.71559	49.206	49	49.716	-0.18206					32	18	2	0	0	0	0.027866	1	4943	4943		45.952	10.334	1	136240	+		31404	24523	21700	21740	35992	35992					0.1262842283365444
KILLNILTL	9	Unmodified	_KILLNILTL_					0	0	0		ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.857666015625	2	520.857535	1039.70052	-1.0573	-0.00055069	0.57019	0.00029699	-0.48708	-0.0002537	520.8576613592626	75.878	1.1328	75.878	75.586	76.719	0					84	28	4	0	0	0	0.34489	1	9348	9348		69.628	0.78148	1	3333000			31405	8421	21701	21741	35993	35993					0.1822552696467028
KILLNILTL	9	Unmodified	_KILLNILTL_					0	0	0		ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.8572998046875	2	520.857535	1039.70052	0.073614	3.8343E-05	-0.61476	-0.0003202	-0.54115	-0.00028186	520.8570645982169	75.927	1.0941	75.939	75.681	76.775	0.011642					86	27	4	0	0	0	0.28753	1	9260	9260		77.318	9.8239	1	3163200			31406	8421	21701	21741	35994	35994					0.1822552696467028
KILMYTESM	9	Unmodified	_KILMYTESM_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.2511596679688	2	558.277403	1114.54025	-0.3468	-0.00019361	2.4283	0.0013557	2.0816	0.0011621	558.277999352128	43.03	0.616	42.89	42.521	43.137	-0.13929					48	16	5	0	0	0	0.024523	1	4004	4004		21.96	0	1	353710	+		31407	21027	21702	21742	35995	35995					-0.012435120861937321
KILPAAAR	8	Unmodified	_KILPAAAR_					0	0	0		ENST00000367434.4_1_1:193155339-193155666:-|nuORF	ENST00000367434.4_1_1:193155339-193155666:-|nuORF	ENST00000367434.4_1_1:193155339-193155666:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	420.276712	838.538872	2.0728	0.00087116	-1.2225	-0.00051379	0.85033	0.00035737	420.2759429287274	23.467	0.5809	23.276	23.079	23.66	-0.19117					20	13	2	0	0	0	0.027866	1	951	951		17.365	7.8944	1	57634			31408	12857	21703	21743	35996	35996					0.1131440272221198
KILPFSPEF	9	Unmodified	_KILPFSPEF_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.3023071289062	2	539.302593	1076.59063	-0.52362	-0.00028239	0.33888	0.00018276	-0.18474	-9.9633E-05	539.3025777486528	75.55	0.76124	75.277	74.976	75.737	-0.27266					51	18	4	0	0	0	0.19099	1	8925	8925		90.37	10.919	1	1285200			31409	1224	21704	21744	35997	35997					0.0554010162547911
KILPFSPEF	9	Unmodified	_KILPFSPEF_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.3020629882812	2	539.302593	1076.59063	-0.60502	-0.00032629	0.41276	0.0002226	-0.19225	-0.00010368	539.3026000372066	75.518	0.69012	75.259	74.906	75.596	-0.25866					42	16	3	0	0	0	0.03201	2	8936	8936;8949		139.97	33.555	1	1389100			31410	1224	21704	21744	35998;35999	35998					0.0554010162547911
KILPFSPEF	9	Unmodified	_KILPFSPEF_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.30224609375	2	539.302593	1076.59063	-0.66141	-0.0003567	0.41666	0.0002247	-0.24476	-0.000132	539.3026186982411	75.391	0.6886	75.215	74.858	75.547	-0.17548					48	16	4	0	0	0	0.12602	1	8898	8898		104.75	30.772	1	1431800			31411	1224	21704	21744	36000	36000					0.0554010162547911
KILPIMFP	8	Unmodified	_KILPIMFP_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2324523925781	2	479.793349	957.572146	0.094968	4.5565E-05	-0.71938	-0.00034515	-0.62441	-0.00029959	479.7929534706556	30.554	0.62782	30.404	30.14	30.768	-0.14952					40	14	4	0	0	0	0.027866	1	1990	1990		44.531	7.372	1	1305400			31412	1635	21705	21745	36001	36001					0.09166268449905601
KILPLTGIPVL	11	Unmodified	_KILPLTGIPVL_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.3535766601562	2	582.391742	1162.76893	-1.47	-0.00085614	-1.772	-0.001032	-3.242	-0.0018881	582.3906796250543	102.21	0.13232	102.21	102.13	102.26	0					4	2	2	0	0	0	0.024808	1	13098	13098		12.812	0	1	16164			31413	9957	21706	21746	36002	36002					0.19405771544484196
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.3104553222656	2	492.310418	982.606283	-0.30935	-0.0001523	-0.061802	-3.0426E-05	-0.37115	-0.00018272	492.31038541560036	61.739	0.80746	61.739	61.414	62.222	0					77	21	5	0	0	0	0.15366	4	7177	7153;7165;7177;7190		98.629	34.422	1	30433000			31414	5672	21707	21747	36003;36004;36005;36006	36005					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.3108825683594	2	492.310418	982.606283	-0.1398	-6.8823E-05	-0.30889	-0.00015207	-0.44869	-0.00022089	492.3102533247591	62.013	0.72474	61.786	61.495	62.219	-0.22663					62	19	4	0	0	0	0.10174	5	7156	7156;7168;7180;7193;7207		110.12	35.865	1	30108000			31415	5672	21707	21747	36007;36008;36009;36010;36011	36007					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.310791015625	2	492.310418	982.606283	-0.59583	-0.00029333	0.105	5.1693E-05	-0.49083	-0.00024164	492.31045994889104	61.696	0.73471	61.767	61.434	62.168	0.071129					71	19	5	0	0	0	0.15366	5	7070	7059;7070;7082;7094;7108		98.629	34.422	1	29078000			31416	5672	21707	21747	36012;36013;36014;36015;36016	36013					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.3105773925781	2	492.310418	982.606283	-0.57068	-0.00028095	0.52126	0.00025662	-0.049419	-2.433E-05	492.310576829834	61.96	0.86977	61.746	61.375	62.244	-0.21375					62	21	5	0	0	0	0.15366	3	6937	6927;6937;6948		98.629	36.522	1	6854900			31417	5672	21707	21747	36017;36018;36019	36018					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.3108215332031	2	492.310418	982.606283	-0.75733	-0.00037284	0.62395	0.00030718	-0.13338	-6.5664E-05	492.3106104748416	61.872	0.97343	61.694	61.37	62.343	-0.17781					60	24	5	0	0	0	0.22902	4	6936	6924;6936;6947;6959		85.161	27.464	1	7369600			31418	5672	21707	21747	36020;36021;36022;36023	36021					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.3109130859375	2	492.310418	982.606283	0.031124	1.5323E-05	-0.25805	-0.00012704	-0.22692	-0.00011172	492.310175041045	62.02	0.78777	61.763	61.464	62.251	-0.25725					55	19	5	0	0	0	0.28753	2	6967	6931;6967		77.318	3.0625	1	8243000			31419	5672	21707	21747	36024;36025	36025					0.11428388142519452
KILPVLPQLII	11	Unmodified	_KILPVLPQLII_					0	0	0		ENST00000541974.5_1_6:163418555-163736016:+|nuORF;ENST00000545186.1_1_6:163483196-163516415:+|nuORF;ENSG00000112530|ENST00000366888|PACRG;PACRG|p.F280Yfs*19|1|0.08|ENSG00000112530|chr6:163314934-163314935|-/ACACAGTC|frameshift_variant;nc|ENSG00000112530|Q96M98|PACRG	ENST00000541974.5_1_6:163418555-163736016:+|nuORF	ENST00000541974.5_1_6:163418555-163736016:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.240234375	3	416.288087	1245.84243	0.1636	6.8104E-05	-1.0463	-0.00043554	-0.88265	-0.00036744	416.62152126526007	41.869	0.21701	41.639	41.544	41.761	-0.23029					8	5	2	0	0	0	0.024779	1	3707	3707		11.932	0	1	39353			31420	16446	21708	21748	36026	36026					0.22934319987007257
KILQLLHPH	9	Unmodified	_KILQLLHPH_					0	0	0		ENST00000485802.1_1_22:20094124-20096613:+|nuORF;ENST00000498171.5_1_22:20077477-20097628:+|nuORF;nc|ENSG00000128191|Q8WYQ5-3|DGCR8;ENSG00000128191|ENST00000351989|DGCR8	ENST00000485802.1_1_22:20094124-20096613:+|nuORF	ENST00000485802.1_1_22:20094124-20096613:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.312255859375	2	549.842751	1097.67095	2.0177	0.0011094	4.3179	0.0023742	6.3356	0.0034836	549.8450653213839	19.48	0.53491	19.546	19.34	19.875	0.066195					14	10	2	0	0	0	0.024541	1	376	376		12.959	0	1	44770			31421	4278	21709	21749	36027	36027					0.1260200773917859
KILQRYSCKL	10	Carbamidomethyl (C)	_KILQRYSC(Carbamidomethyl (C))KL_	KILQRYSC(1)KL		KILQRYSC(63)KL		0	1	0			REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.8814697265625	3	436.920069	1307.73838	0.53279	0.00023279	0.0090539	3.9558E-06	0.54185	0.00023674	436.9202905181609	39.511	0.16748	39.511	39.459	39.627	0					6	4	2	0	0	0	0.03519	1	3409	3409		63.426	18.404	1	76429	+		31422	24769	21710	21750	36028	36028	325				0.09681669887800126
KILQSVGHVRA	11	Unmodified	_KILQSVGHVRA_					0	0	0			REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1	REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3636474609375	2	604.367121	1206.71969	-0.63259	-0.00038232	0.014142	8.5468E-06	-0.61845	-0.00037377	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	1.0327	1	12967	12967		9.1829	2.8703	1	4804600	+		31423	28683	21711	21751	36029	36029					0.12459876308275852
KILREKKILEF	11	Unmodified	_KILREKKILEF_					0	0	0		ENST00000399417.3_1_X:106595227-106595875:-|nuORF	ENST00000399417.3_1_X:106595227-106595875:-|nuORF	ENST00000399417.3_1_X:106595227-106595875:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.9713134765625	3	472.969417	1415.88642	-0.21442	-0.00010141	3.519	0.0016644	3.3046	0.001563	472.9710650802329	49.088	1.4052	48.987	48.726	50.131	-0.1008					127	36	6	0	0	0	1.096	1	4912	4912		12.433	2.7867	1	6827200			31424	13645	21712	21752	36030	36030					0.19511304413299513
KILRIKLEKPP	11	Unmodified	_KILRIKLEKPP_					0	0	0			REV__ENSG00000132510|ENST00000448097|KDM6B	REV__ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.7264099121094	3	445.634257	1333.88094	0.077897	3.4714E-05	3.9454	0.0017582	4.0233	0.0017929	445.6358816855753	39.127	1.1194	38.901	38.736	39.856	-0.2257					123	29	5	0	0	0	0.024876	1	3269	3269		5.6988	2.4875	1	3217800	+		31425	23288	21713	21753	36031	36031					0.22735625621498912
KILRLIEP	8	Unmodified	_KILRLIEP_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.28759765625	2	491.326402	980.638252	0.10907	5.3588E-05	1.491	0.00073258	1.6001	0.00078617	491.3272617205836	76.118	0.50822	76.13	75.938	76.446	0.011642					20	12	2	0	0	0	0.027866	1	9271	9271		40.573	7.7602	1	69951	+		31426	27701	21714	21754	36032	36032					0.14715800616329489
KILRSIDMYSW	11	Unmodified	_KILRSIDMYSW_					0	0	0			REV__ENST00000547075.1_1_12:62649038-62652582:-|nuORF	REV__ENST00000547075.1_1_12:62649038-62652582:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.2664489746094	3	471.251595	1410.73296	-0.37787	-0.00017807	2.5027	0.0011794	2.1249	0.0010013	471.587038081929	29.93	0.63943	29.78	29.459	30.099	-0.14952					25	14	3	0	0	0	0.024747	1	1855	1855		39.873	17.312	1	81533	+		31427	34859	21715	21755	36033	36033					0.04401946305347337
KILRSKMG	8	Unmodified	_KILRSKMG_					0	0	0		POTEC|p.M56I|1|0.23|ENSG00000183206|chr18:14542979-14542979|C/T|missense_variant	POTEC|p.M56I|1|0.23|ENSG00000183206|chr18:14542979-14542979|C/T|missense_variant	POTEC|p.M56I|1|0.23|ENSG00000183206|chr18:14542979-14542979|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.8082580566406	2	466.78913	931.563706	0.38546	0.00017993	-0.96811	-0.00045191	-0.58265	-0.00027198	466.7886276188083	21.301	0.38489	21.124	20.918	21.303	-0.17721					12	7	2	0	0	0	0.027866	1	642	642		31.955	18.18	1	27516			31428	18979	21716	21756	36034	36034					0.09518714533305683
KILSELFTV	9	Unmodified	_KILSELFTV_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3153686523438	2	525.3157	1048.61685	-0.30167	-0.00015847	0.11241	5.9049E-05	-0.18927	-9.9425E-05	525.3157326902453	73.807	1.8772	73.53	72.884	74.761	-0.2769					135	49	5	0	0	0	0.016584	6	8678	8667;8678;8696;8708;8717;8745		215.39	94.769	1	17314000			31429	1981	21717	21757	36035;36036;36037;36038;36039;36040	36036					0.09448370796940253
KILSELFTV	9	Unmodified	_KILSELFTV_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3150024414062	2	525.3157	1048.61685	-0.26441	-0.0001389	0.02917	1.5324E-05	-0.23524	-0.00012358	525.3156911097078	73.806	2.4185	73.541	72.894	75.313	-0.26479					142	60	5	0	0	0	0.013065	5	8687	8676;8687;8699;8712;8724		171.53	86.616	1	17599000			31430	1981	21717	21757	36041;36042;36043;36044;36045	36042					0.09448370796940253
KILSELFTV	9	Unmodified	_KILSELFTV_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3153686523438	2	525.3157	1048.61685	-0.079924	-4.1985E-05	-0.41989	-0.00022058	-0.49982	-0.00026256	525.315494389263	73.566	1.3702	73.376	72.803	74.173	-0.19026					101	35	6	0	0	0	0.014454	6	8655	8633;8643;8655;8667;8680;8692		200.16	103.97	1	15537000			31431	1981	21717	21757	36046;36047;36048;36049;36050;36051	36048					0.09448370796940253
KILTLLKH	8	Unmodified	_KILTLLKH_					0	0	0			REV__nc|ENSG00000116062|P52701-4|MSH6	REV__nc|ENSG00000116062|P52701-4|MSH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.30767822265625	2	483.328945	964.643337	-0.56203	-0.00027165	0.5032	0.00024321	-0.058832	-2.8435E-05	483.3290347980309	81.613	0.84512	81.482	81.055	81.9	-0.13075					36	20	3	0	0	0	0.027866	1	10134	10134		13.775	2.9098	1	419310	+		31432	22255	21718	21758	36052	36052					0.1596010447892695
KILVSETKV	9	Unmodified	_KILVSETKV_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.26959228515625	2	508.82115	1015.62775	-0.6123	-0.00031155	0.14842	7.552E-05	-0.46388	-0.00023603	508.8212784197306	45.049	0.3138	44.796	44.63	44.944	-0.25252					11	7	2	0	0	0	0.024447	1	4217	4217		32.812	17.171	1	67819	+		31433	22840	21719	21759	36053	36053					0.120557731712438
KILVSETKV	9	Unmodified	_KILVSETKV_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.82115	1015.62775	-0.88896	-0.00045232	-0.62399	-0.0003175	-1.5129	-0.00076982	508.82060244028827	44.81	0.34966	44.81	44.657	45.006	0	0.024807	8.3418E-05	NaN	24.519	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219930	+		31434	22840	21719	21759							0.120557731712438
KILVSETKV	9	Unmodified	_KILVSETKV_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.82115	1015.62775	-0.99444	-0.00050599	-0.88643	-0.00045103	-1.8809	-0.00095702	508.8204130643642	44.962	0.346	44.814	44.628	44.974	-0.1488	0.027965	-0.00018365	NaN	24.519	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225930	+		31435	22840	21719	21759							0.120557731712438
KILYCEVP	8	Unmodified	_KILYCEVP_					0	0	0		ENSG00000154080|ENST00000618847|CHST9	ENSG00000154080|ENST00000618847|CHST9	ENSG00000154080|ENST00000618847|CHST9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7481689453125	2	482.762246	963.50994	0.2253	0.00010877	-0.42125	-0.00020336	-0.19594	-9.4594E-05	482.7619363644225	68.263	1.2996	68.263	67.49	68.789	0					57	33	2	0	0	0	0.027866	1	8233	8233		11.511	0	1	192740			31436	6378	21720	21760	36054	36054					0.026724973109139682
KILYHIIKGD	10	Unmodified	_KILYHIIKGD_					0	0	0		ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.5755920410156	3	400.576408	1198.70739	1.7928	0.00071814	-3.867	-0.001549	-2.0742	-0.00083088	400.57484817452035	17.887	1.1879	17.733	17.458	18.645	-0.15403					49	23	4	0	0	0	1.0997	1	251	251		32.751	3.5805	1	686390			31437	1651	21721	21761	36055	36055					0.1159883984521457
KIMDYSLLL	9	Oxidation (M)	_KIM(Oxidation (M))DYSLLL_		KIM(1)DYSLLL		KIM(88)DYSLLL	0	0	1		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MSMS	OPSCC_39_ClassI_Rep-1	1	556.3067016601562	2	556.307018	1110.59948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.383	1	69.383	68.883	69.883	0								0	0	0	0.12136	1	8358	8358		87.696	21.267	1				31438	9515	21722	21762	36056	36056		393			0.048607071996229934
KIMDYSLLL	9	Oxidation (M)	_KIM(Oxidation (M))DYSLLL_		KIM(1)DYSLLL		KIM(90)DYSLLL	0	0	1		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MSMS	OPSCC_39_ClassI_Rep-2	2	556.3068237304688	2	556.307018	1110.59948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.679	1	69.387	68.887	69.887	-0.29291								0	0	0	0.1093	1	8365	8365		90.37	18.492	1				31439	9515	21722	21762	36057	36057		393			0.048607071996229934
KIMDYSLLL	9	Oxidation (M)	_KIM(Oxidation (M))DYSLLL_		KIM(1)DYSLLL		KIM(130)DYSLLL	0	0	1		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C;nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.3073120117188	2	556.307018	1110.59948	-0.25685	-0.00014289	-0.1039	-5.7798E-05	-0.36074	-0.00020068	556.3068715879532	69.456	0.942	69.471	69.053	69.995	0.015121					43	23	2	0	0	0	0.057894	1	8289	8289		125.81	40.898	1	2218100			31440	9515	21722	21762	36058	36058		393			0.048607071996229934
KIMEQSPDM	9	Oxidation (M)	_KIMEQSPDM(Oxidation (M))_		KIMEQSPDM(1)		KIM(-160)EQSPDM(160)	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.750244140625	2	547.746467	1093.47838	-1.6765	-0.00091827	1.6609	0.00090973	-0.015596	-8.5426E-06	547.7472149287152	30.154	0.98437	30.154	29.773	30.758	0					57	23	4	0	0	0	0.013924	2	1921	1910;1921		209.84	96.428	2	1349700			31441	8675;4073	21723	21763	36059;36060	36060		161			-0.0646186350534208
KIMEQSPDM	9	Oxidation (M)	_KIMEQSPDM(Oxidation (M))_		KIMEQSPDM(1)		KIM(-210)EQSPDM(210)	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.7489624023438	2	547.746467	1093.47838	-1.1312	-0.00061961	0.27543	0.00015086	-0.85577	-0.00046875	547.746898497674	30.093	0.90763	30.102	29.757	30.665	0.0086708					61	21	5	0	0	0	0.013468	2	1888	1888;1900		225.24	99.423	2	1720700			31442	8675;4073	21723	21763	36061;36062	36061		161			-0.0646186350534208
KIMEQSPDM	9	Oxidation (M)	_KIMEQSPDM(Oxidation (M))_		KIMEQSPDM(1)		KIM(-190)EQSPDM(190)	0	0	1		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.7506713867188	2	547.746467	1093.47838	-1.6478	-0.00090259	1.4393	0.00078835	-0.20855	-0.00011423	547.7471747138726	29.741	0.7725	29.819	29.527	30.3	0.078346					45	18	3	0	0	0	0.015713	1	1808	1808		195.06	81.652	2	1153300			31443	8675;4073	21723	21763	36063	36063		161			-0.0646186350534208
KIMEQSPDM	9	Unmodified	_KIMEQSPDM_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7485961914062	2	539.74901	1077.48347	-1.3501	-0.00072871	1.7812	0.00096139	0.4311	0.00023268	539.7496833929687	39.325	1.1466	39.226	38.807	39.953	-0.098755					57	22	4	0	0	0	0.016566	1	3353	3353		218.73	105.32	1	2858600			31444	8675;4073	21723	21764	36064	36064					-0.05217559642710512
KIMEQSPDM	9	Unmodified	_KIMEQSPDM_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.74901	1077.48347	-0.48357	-0.00026101	0.91913	0.0004961	0.43556	0.0002351	539.7492858963673	39.271	1.1913	39.271	38.833	40.024	0	-0.054971	-0.00030339	NaN	218.73	64	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2694700			31445	8675;4073	21723	21764							-0.05217559642710512
KIMEQSPDM	9	Unmodified	_KIMEQSPDM_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.74901	1077.48347	-1.5188	-0.00081977	0.71114	0.00038383	-0.80767	-0.00043594	539.7498288939491	39.502	2.1372	39.526	38.458	40.596	0.023727	0.19932	-0.00052793	NaN	218.73	162	58	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2441100			31446	8675;4073	21723	21764							-0.05217559642710512
KIMEQSPDM	9	Unmodified	_KIMEQSPDM_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.74901	1077.48347	-0.80188	-0.00043281	1.2171	0.00065694	0.41525	0.00022413	539.7492830609999	39.42	0.18728	39.255	39.116	39.304	-0.16458	-0.071063	1.8294E-05	NaN	218.73	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70863			31447	8675;4073	21723	21764							-0.05217559642710512
KIMEQSPDM	9	Unmodified	_KIMEQSPDM_					0	0	0		ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.74901	1077.48347	-0.74303	-0.00040105	0.35686	0.00019261	-0.38618	-0.00020844	539.749301987154	39.577	0.31301	39.354	39.149	39.462	-0.22311	0.02724	-0.00091037	NaN	218.73	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55665			31448	8675;4073	21723	21764							-0.05217559642710512
KIMKGKIKS	9	Unmodified	_KIMKGKIKS_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.81494140625	2	516.833537	1031.65252	-1.1026	-0.00056985	3.7528	0.0019396	2.6502	0.0013697	516.8354143300345	65.318	0.22137	65.045	64.94	65.161	-0.27283					7	5	2	0	0	0	0.024495	1	7676	7676		19.997	0	1	67444			31449	7177	21724	21765	36065	36065					0.1379612977295892
KIMNVKGKVIL	11	Unmodified	_KIMNVKGKVIL_					0	0	0		ENST00000495328.5_2_9:124218117-124241469:-|nuORF;ENST00000481534.5_2_9:124214542-124241469:-|nuORF;ENST00000481799.5_2_9:124218117-124262303:-|nuORF	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.9027099609375	2	621.901951	1241.78935	-0.47748	-0.00029695	-1.3021	-0.00080976	-1.7796	-0.0011067	621.9008995623008	105.33	0.39741	105.32	105.12	105.52	-0.0015945					28	11	3	0	0	0	1.0685	1	13468	13468		19.997	0.89325	1	1660400			31450	15232	21725	21766	36066	36066					0.1781261893268038
KIMVDRINL	9	Unmodified	_KIMVDRINL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3024291992188	2	551.326076	1100.6376	-0.34801	-0.00019187	-3.2068	-0.001768	-3.5548	-0.0019599	551.3244664735075	70.274	0.45816	70.007	69.662	70.121	-0.26725					18	10	3	0	0	0	0.024263	1	8184	8184		26.693	0	1	184500			31451	18548	21726	21767	36067	36067					0.09130637904945615
KINCSGKIV	9	Unmodified	_KINCSGKIV_					0	0	0		nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;ENST00000343844.8_1_11:49204701-49214353:-|nuORF;ENST00000526226.1_1_11:49207215-49208312:-|nuORF;nc|ENSG00000086205|Q04609-4|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7555236816406	2	481.278595	960.542637	2.218	0.0010675	-3.569	-0.0017177	-1.351	-0.0006502	481.27662023400035	24.194	0.79122	24.013	23.626	24.418	-0.18089					25	17	3	0	0	0	0.024319	1	1015	1015		56.721	5.3856	1	56817			31452	1813	21727	21768	36068	36068					0.06078704433764415
KINCSGKIV	9	Unmodified	_KINCSGKIV_					0	0	0		nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;ENST00000343844.8_1_11:49204701-49214353:-|nuORF;ENST00000526226.1_1_11:49207215-49208312:-|nuORF;nc|ENSG00000086205|Q04609-4|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.278595	960.542637	0.35209	0.00016945	-1.2146	-0.00058456	-0.8625	-0.00041511	481.2775202942975	24.352	0.55229	24.136	23.954	24.506	-0.2151	0.098381	0.00070763	NaN	56.721	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60346			31453	1813	21727	21768							0.06078704433764415
KINCSGKIV	9	Unmodified	_KINCSGKIV_					0	0	0		nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;ENST00000343844.8_1_11:49204701-49214353:-|nuORF;ENST00000526226.1_1_11:49207215-49208312:-|nuORF;nc|ENSG00000086205|Q04609-4|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.278595	960.542637	-0.23779	-0.00011444	-0.45254	-0.0002178	-0.69033	-0.00033224	481.27857125534405	24.139	0.3037	23.965	23.786	24.089	-0.17484	-0.073454	0.0014411	NaN	56.721	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63368			31454	1813	21727	21768							0.06078704433764415
KINDGKGVVAV	11	Unmodified	_KINDGKGVVAV_					0	0	0			REV__ENSG00000115155|ENST00000272371|OTOF	REV__ENSG00000115155|ENST00000272371|OTOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.7747802734375	2	550.327131	1098.63971	-0.7153	-0.00039365	-0.094947	-5.2252E-05	-0.81024	-0.0004459	550.3270093851611	44.048	0.55688	44.085	43.853	44.41	0.036903					26	15	3	0	0	0	0.024759	1	4088	4088		47.96	5.0953	1	398100	+		31455	22169	21728	21769	36069	36069					0.09433389914443069
KINEKKKLV	9	Unmodified	_KINEKKKLV_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;SNX30-CNTLN|1|fusion	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.33154296875	2	550.363516	1098.71248	2.1746	0.0011968	-2.4184	-0.001331	-0.24377	-0.00013416	550.3619896735071	18.986	0.39544	18.752	18.533	18.928	-0.23345					17	7	3	0	0	0	0.024539	1	343	343		27.882	7.8855	1	90883			31456	1092	21729	21770	36070	36070					0.16707143707844807
KINEVTRKLH	10	Unmodified	_KINEVTRKLH_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.3699951171875	2	619.372404	1236.73025	-0.36932	-0.00022875	-1.9375	-0.0012	-2.3068	-0.0014288	619.3711950685711	100.23	0.72057	100.22	99.857	100.58	-0.0050812					48	19	3	0	0	0	1.1329	1	12748	12748		27.882	2.3082	1	919110	+		31457	28263	21730	21771	36071	36071					0.12135858962687962
KINFTLLL	8	Unmodified	_KINFTLLL_					0	0	0		ENST00000477859.1_1_7:20420175-20420469:+|nuORF	ENST00000477859.1_1_7:20420175-20420469:+|nuORF	ENST00000477859.1_1_7:20420175-20420469:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2668151855469	2	481.307678	960.600803	-0.35744	-0.00017204	0.039045	1.8793E-05	-0.3184	-0.00015325	481.3076237024133	45.522	0.60878	45.314	45.092	45.701	-0.20815					33	17	3	0	0	0	0.027866	1	4355	4355		18.324	16.997	1	517990			31458	15119	21731	21772	36072	36072					0.11892709350718178
KINIVAGP	8	Unmodified	_KINIVAGP_					0	0	0			REV__ENSG00000204291|ENST00000375001|COL15A1	REV__ENSG00000204291|ENST00000375001|COL15A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.876953125	2	406.255446	810.496338	0.24301	9.8723E-05	3.2833	0.0013339	3.5263	0.0014326	406.2566985334752	49.198	1.1727	49.097	48.765	49.938	-0.1008					55	30	2	0	0	0	0.027866	1	5023	5023		14.664	0.88877	1	226480	+		31459	28586	21732	21773	36073	36073					0.08351007593989834
KINKVLVR	8	Unmodified	_KINKVLVR_					0	0	0		ENSG00000169231|ENST00000368378|THBS3;ENST00000486260.5_1_1:155170782-155176189:-|nuORF	ENSG00000169231|ENST00000368378|THBS3;ENST00000486260.5_1_1:155170782-155176189:-|nuORF	ENSG00000169231|ENST00000368378|THBS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.31365966796875	2	485.332019	968.649485	-1.0553	-0.00051215	-1.5569	-0.00075562	-2.6122	-0.0012678	485.33132196563884	40.419	0.1488	40.442	40.311	40.46	0.023006					5	3	2	0	0	0	0.027866	1	3484	3484		19.36	0	1	157340			31460	7916;15343	21733	21774	36074	36074					0.1639062271046896
KINLGGLHF	9	Unmodified	_KINLGGLHF_					0	0	0			REV__ENST00000379619.5_1_2:28635789-28635870:+|nuORF	REV__ENST00000379619.5_1_2:28635789-28635870:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.791015625	2	499.792727	997.5709	-0.65376	-0.00032674	-3.8968	-0.0019476	-4.5506	-0.0022743	499.790769152799	29.705	1.0216	29.459	29.099	30.121	-0.24524					33	23	2	0	0	0	0.75282	1	1859	1859		42.474	1.9018	1	4505500	+		31461	31440	21734	21775	36075	36075					0.07201770405379193
KINLHAKGE	9	Unmodified	_KINLHAKGE_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8161926269531	2	505.293091	1008.57163	-0.5861	-0.00029615	4.1165	0.0020801	3.5304	0.0017839	505.29492409491166	68.63	0.8546	68.369	68.063	68.917	-0.26166					45	20	3	0	0	0	0.022587	1	7918	7918		74.255	0	1	359180	+		31462	20735	21735	21776	36076	36076					0.06768565054414921
KINLNVPAT	9	Unmodified	_KINLNVPAT_					0	0	0			REV__nc|ENSG00000145216|Q6UN15-4|FIP1L1	REV__nc|ENSG00000145216|Q6UN15-4|FIP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2884521484375	2	485.290017	968.565481	0.2133	0.00010351	-3.8434	-0.0018651	-3.6301	-0.0017616	485.28829372610755	18.064	2.2094	17.932	17.464	19.674	-0.13147					99	44	5	0	0	0	0.83071	1	229	229		37.159	0.71236	1	6599700	+		31463	24387	21736	21777	36077	36077					0.07994046822898326
KINNEMAL	8	Unmodified	_KINNEMAL_					0	0	0			REV__DBT|p.T392Kfs*21|1|0.17|ENSG00000137992|chr1:100206479-100206479|G/-|frameshift_variant	REV__DBT|p.T392Kfs*21|1|0.17|ENSG00000137992|chr1:100206479-100206479|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7378234863281	2	466.747127	931.479702	0.5534	0.0002583	-2.3056	-0.0010761	-1.7522	-0.00081782	466.74614494238534	45.383	0.85722	45.427	44.824	45.681	0.043877					32	24	2	0	0	0	0.027866	1	4277	4277		71.378	11.084	1	275140	+		31464	19650	21737	21778	36078	36078					0.011221386457236804
KINPIFEQL	9	Unmodified	_KINPIFEQL_					0	0	0			REV__ENSG00000125482|ENST00000334270|TTF1	REV__ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8447265625	2	551.318774	1100.623	0.10338	5.6996E-05	-0.34038	-0.00018766	-0.23699	-0.00013066	551.3185445539299	82.364	0.77783	82.183	81.814	82.592	-0.18079					25	17	2	0	0	0	0.024495	1	9979	9979		19.997	0	1	104760	+		31465	22822	21738	21779	36079	36079					0.07670889028463534
KINQAAQKI	9	Unmodified	_KINQAAQKI_					0	0	0			REV__ENST00000402650.1_1_6:71874941-71875379:+|nuORF	REV__ENST00000402650.1_1_6:71874941-71875379:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.30511474609375	2	507.308741	1012.60293	-0.056414	-2.8619E-05	0.079719	4.0442E-05	0.023305	1.1823E-05	507.30878030686455	41.275	1.0099	41.275	40.944	41.954	0					67	28	4	0	0	0	0.55828	2	3698	3698;3713		55.504	4.1688	1	7080500	+		31466	31873	21739	21780	36080;36081	36080					0.09713138088500273
KINQAKPEC	9	Unmodified	_KINQAKPEC_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7091674804688	2	515.771134	1029.52771	-0.53434	-0.0002756	-3.4714	-0.0017904	-4.0057	-0.002066	515.7690865131513	30.277	0.46373	30.033	29.82	30.284	-0.24415					23	10	3	0	0	0	0.024447	1	1938	1938		13.454	0	1	259620			31467	18187	21740	21781	36082	36082					0.014132125657624783
KINQEFGEKE	10	Unmodified	_KINQEFGEKE_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3103637695312	2	611.309135	1220.60372	0.17589	0.00010753	2.3063	0.0014098	2.4821	0.0015174	611.3104346069422	47.368	2.2607	47.215	46.208	48.469	-0.153					132	64	4	0	0	0	0.61732	1	4733	4733		75.043	7.5496	1	3817400			31468	18387	21741	21782	36083	36083					0.0022388794689049973
KINQNYNEP	9	Unmodified	_KINQNYNEP_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.813720703125	2	560.275095	1118.53564	0.14922	8.3606E-05	-3.4176	-0.0019148	-3.2684	-0.0018312	560.2730614452057	76.556	0.53269	76.567	76.325	76.857	0.011642					26	12	3	0	0	0	0.024294	1	9351	9351		55.504	0	1	394740	+		31469	20191;37668	21742	21783	36084	36084					-0.018889369131102285
KINREQRRL	9	Unmodified	_KINREQRRL_					0	0	0			REV__OFD1|p.Q333R|1|0.31|ENSG00000046651|chrX:13751311-13751311|A/G|missense_variant	REV__OFD1|p.Q333R|1|0.31|ENSG00000046651|chrX:13751311-13751311|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9142761230469	3	404.914305	1211.72109	1.7046	0.0006902	-1.5188	-0.000615	0.18571	7.5196E-05	404.91363130220236	20.359	0.68109	20.163	19.901	20.582	-0.19577					39	13	4	0	0	0	0.94779	1	535	535		29.17	0.59333	1	306700	+		31470	37302	21743	21784	36085	36085					0.12369510397024897
KINRTQAE	8	Unmodified	_KINRTQAE_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2;ENST00000426902.5_1_19:18273817-18280101:+|nuORF	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7314147949219	2	480.267073	958.519593	-0.096942	-4.6558E-05	-0.31743	-0.00015245	-0.41437	-0.00019901	480.2670594003766	31.554	0.93634	31.566	31.127	32.063	0.011797					50	22	4	0	0	0	0.027866	1	2102	2102		26.693	5.746	1	2751300			31471	2702	21744	21785	36086	36086					0.03867401640661683
KINRYAKDD	9	Unmodified	_KINRYAKDD_					0	0	0			REV__ENST00000520757.1_1_8:96047742-96087920:+|nuORF	REV__ENST00000520757.1_1_8:96047742-96087920:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.279296875	2	561.798737	1121.58292	-0.52785	-0.00029654	-3.3732	-0.0018951	-3.9011	-0.0021916	561.7966358121652	85.63	0.57898	85.573	85.27	85.849	-0.057617					26	13	3	0	0	0	0.024495	1	10668	10668		34.173	5.0025	1	217220	+		31472	25057	21745	21786	36087	36087					0.0269934235789151
KINTESSLW	9	Unmodified	_KINTESSLW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.28173828125	2	539.282389	1076.55022	-0.90192	-0.00048639	0.85393	0.00046051	-0.047989	-2.588E-05	539.2823015284349	52.146	0.72207	52.028	51.758	52.48	-0.11875					59	18	4	0	0	0	0.48817	1	5414	5414		60.118	8.9256	1	2767500			31473	935	21746	21787	36088	36088					0.01501135235048423
KINTESSLW	9	Unmodified	_KINTESSLW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2826538085938	2	539.282389	1076.55022	-1.4631	-0.00078902	1.6275	0.00087768	0.16442	8.867E-05	539.2826563414301	52.395	0.60978	52.126	51.944	52.553	-0.26903					53	15	4	0	0	0	0.26966	1	5430	5430		79.713	7.8351	1	2911700			31474	935	21746	21787	36089	36089					0.01501135235048423
KINTESSLW	9	Unmodified	_KINTESSLW_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2822875976562	2	539.282389	1076.55022	-0.93173	-0.00050246	0.74435	0.00040141	-0.18738	-0.00010105	539.2823246798955	52.22	0.66032	52.036	51.815	52.475	-0.18404					57	16	4	0	0	0	0.31037	1	5411	5411		74.255	13.961	1	2433600			31475	935	21746	21787	36090	36090					0.01501135235048423
KIPGIFEL	8	Unmodified	_KIPGIFEL_					0	0	0		ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	MSMS	OPSCC_40_ClassI_Rep-2	5	458.77911376953125	2	458.778754	915.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.178	1	70.921	70.421	71.421	-0.25713								0	0	0	0.57512	1	8312	8312		50.025	3.2581	1				31476	963	21747	21788	36091	36091					0.08180447425286275
KIPIAPSPL	9	Unmodified	_KIPIAPSPL_					0	0	0		ENST00000600228.5_1_19:52633831-52643082:-|nuORF	ENST00000600228.5_1_19:52633831-52643082:-|nuORF	ENST00000600228.5_1_19:52633831-52643082:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.2892761230469	2	468.299853	934.585153	-0.4748	-0.00022235	1.7149	0.0008031	1.2401	0.00058075	468.30080350356576	48.687	0.39983	48.505	48.303	48.702	-0.18206					18	10	3	0	0	0	0.024263	1	4866	4866		71.296	34.137	1	308260			31477	17498	21748	21789	36092	36092					0.11524422833656445
KIPIREFMN	9	Unmodified	_KIPIREFMN_					0	0	0		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;ENSG00000172572|ENST00000359062|PDE3A	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	573.3601684570312	2	574.318251	1146.62195	-0.40236	-0.00023108	2.9039	0.0016678	2.5016	0.0014367	574.3187448182223	52.598	0.42774	52.69	52.321	52.749	0.091938					13	10	2	0	0	0	0.024292	1	5539	5539		49.442	13.823	1	67271			31478	8291	21749	21790	36093	36093					0.05450351387912633
KIPKKINTG	9	Unmodified	_KIPKKINTG_					0	0	0			REV__nc|ENSG00000114978|Q9H8S9-2|MOB1A	REV__nc|ENSG00000114978|Q9H8S9-2|MOB1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.90167236328125	2	499.821484	997.628415	0.034261	1.7125E-05	-1.0092	-0.00050443	-0.97497	-0.00048731	499.82132490953643	43.725	0.43429	43.756	43.558	43.992	0.030827					16	11	2	0	0	0	0.024405	1	4060	4060		27.882	0	1	128880	+		31479	22156	21750	21791	36094	36094					0.1295061261093906
KIPKVTKT	8	Unmodified	_KIPKVTKT_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.755859375	2	457.805303	913.596052	-0.30733	-0.0001407	-1.1312	-0.00051788	-1.4386	-0.00065858	457.80580897970094	20.844	0.32598	20.739	20.522	20.848	-0.10477					9	6	2	0	0	0	0.027866	1	577	577		35.618	21.843	1	14227			31480	2544	21751	21792	36095	36095					0.1357982520794394
KIPMEYVL	8	Unmodified	_KIPMEYVL_					0	0	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7793273925781	2	496.777896	991.54124	0.61493	0.00030549	3.9354	0.001955	4.5503	0.0022605	496.7791550724687	51.266	0.61187	51.266	50.956	51.568	0					28	16	3	0	0	0	0.71833	1	5434	5434		65.803	3.6958	1	5475700	+		31481	28098	21752	21793	36096	36096					0.04513070345001324
KIPNFVKL	8	Unmodified	_KIPNFVKL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000031900	REV__CON__ENSEMBL:ENSBTAP00000031900	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2906494140625	2	479.807845	957.601138	0.69506	0.0003335	-2.2019	-0.0010565	-1.5069	-0.00072301	479.8067977696534	47.181	0.22119	47.028	46.94	47.161	-0.15301					7	5	2	0	0	0	0.027866	1	4696	4696		33.516	0	1	88039	+	+	31482	19528	21753	21794	36097	36097					0.12064129070552099
KIPQKGILIG	10	Unmodified	_KIPQKGILIG_					0	0	0		nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1	nc|ENSG00000021826|P31327-2|CPS1	nc|ENSG00000021826|P31327-2|CPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7715454101562	2	533.852784	1065.69102	-0.50082	-0.00026737	-0.33334	-0.00017795	-0.83416	-0.00044532	533.85264722228	55.338	0.51635	55.131	54.865	55.382	-0.20708					20	14	2	0	0	0	0.03519	1	5881	5881		10.265	0	1	183730			31483	962	21754	21795	36098	36098					0.1607975867912046
KIPRKEAK	8	Unmodified	_KIPRKEAK_					0	0	0			REV__ENST00000320560.12_1_12:45725150-45740856:+|nuORF	REV__ENST00000320560.12_1_12:45725150-45740856:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2815856933594	2	485.313826	968.613099	-0.43425	-0.00021075	0.11629	5.6436E-05	-0.31796	-0.00015431	485.3134606348692	36.585	0.54134	36.542	36.383	36.925	-0.042458					16	13	2	0	0	0	0.027866	1	2879	2879		26.693	0	1	294550	+		31484	30334	21755	21796	36099	36099					0.12753745813745354
KIPTKPAM	8	Unmodified	_KIPTKPAM_					0	0	0			REV__ENSG00000165891|ENST00000322886|E2F7;REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.2666931152344	2	443.264956	884.515359	0.62206	0.00027574	3.8148	0.001691	4.4369	0.0019667	443.26654390952115	85.887	1.0799	85.737	85.451	86.531	-0.14967					73	24	4	0	0	0	1.0574	1	10425	10425		24.203	2.2429	1	1048700	+		31485	25941;34936	21756	21797	36100	36100					0.06848220893391499
KIPTKVKK	8	Unmodified	_KIPTKVKK_					0	0	0			REV__ENSG00000157653|ENST00000374165|C9orf43	REV__ENSG00000157653|ENST00000374165|C9orf43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.78289794921875	2	471.328945	940.643337	0.85141	0.00040129	-0.56115	-0.00026449	0.29026	0.00013681	471.32848575390483	18.723	0.74137	18.566	18.099	18.84	-0.15637					25	14	4	0	0	0	0.027866	1	288	288		12.959	4.7279	1	224030	+		31486	25143	21757	21798	36101	36101					0.17064104478936315
KIPTLIMQHL	10	Unmodified	_KIPTLIMQHL_					0	0	0			REV__nc|ENSG00000020577|Q9UPU9-3|SAMD4A	REV__nc|ENSG00000020577|Q9UPU9-3|SAMD4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.3596801757812	2	597.357376	1192.7002	-0.33408	-0.00019956	2.5509	0.0015238	2.2168	0.0013242	597.3587791150173	98.823	1.5113	98.654	98.154	99.666	-0.16862					108	35	4	0	0	0	1.1265	1	12231	12231		24.519	1.4767	1	2695800	+		31487	19993	21758	21799	36102	36102					0.11155783973185862
KIPVFIRISLG	11	Unmodified	_KIPVFIRISLG_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.901611328125	2	621.900266	1241.78598	0.5184	0.00032239	0.52355	0.0003256	1.042	0.00064799	621.9003389778508	105.39	0.39869	105.23	105.09	105.48	-0.16484					24	10	3	0	0	0	1.0718	1	13135	13135		19.104	0.84144	1	1135300	+		31488	25017	21759	21800	36103	36103					0.1747569215031035
KIQAGQGQP	9	Unmodified	_KIQAGQGQP_					0	0	0			REV__ENSG00000204296|ENST00000533191|TSBP1	REV__ENSG00000204296|ENST00000533191|TSBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7721862792969	2	463.756341	925.498129	-0.42676	-0.00019791	2.8787	0.001335	2.4519	0.0011371	463.7577689988867	23.195	0.32684	23.134	22.981	23.308	-0.06086					10	7	2	0	0	0	0.024323	1	867	867		35.618	3.6634	1	53574	+		31489	28587	21760	21801	36104	36104					0.03240016611948704
KIQALDRGT	9	Unmodified	_KIQALDRGT_					0	0	0		ENST00000527141.5_1_11:66331945-66334941:-|nuORF;ENSG00000174080|ENST00000310325|CTSF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2905578613281	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.77768	1	10434	10434		40.778	1.5253	1	10074000			31490	8439	21761	21802	36105	36105					0.06628261191792717
KIQAQLTKF	9	Unmodified	_KIQAQLTKF_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7927856445312	2	538.826766	1075.63898	-0.82089	-0.00044232	3.7521	0.0020218	2.9313	0.0015794	538.8292293301894	78.349	0.42653	78.193	77.957	78.383	-0.15591					22	9	4	0	0	0	0.024447	1	9330	9330		40.778	6.6056	1	186280	+		31491	28692	21762	21803	36106	36106					0.1041859526535518
KIQEIDLAGA	10	Unmodified	_KIQEIDLAGA_					0	0	0			REV__ENST00000562687.6_3_16:32769598-32772029:+|nuORF	REV__ENST00000562687.6_3_16:32769598-32772029:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2970581054688	2	529.298039	1056.58152	-0.86191	-0.00045621	0.393	0.00020802	-0.46891	-0.00024819	529.2981090557425	56.157	1.1454	56.157	55.892	57.038	0					63	32	4	0	0	0	0.55353	1	6244	6244		82.241	7.9855	1	5070600	+		31492	35202	21763	21804	36107	36107					0.055497082691545074
KIQEIDLAGA	10	Unmodified	_KIQEIDLAGA_					0	0	0			REV__ENST00000562687.6_3_16:32769598-32772029:+|nuORF	REV__ENST00000562687.6_3_16:32769598-32772029:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.297119140625	2	529.298039	1056.58152	-0.72722	-0.00038492	0.39863	0.00021099	-0.32859	-0.00017392	529.2980755724693	56.244	0.72909	56.088	55.666	56.395	-0.15601					52	19	4	0	0	0	0.40067	2	6239	6227;6239		98.629	10.452	1	4077800	+		31493	35202	21763	21804	36108;36109	36109					0.055497082691545074
KIQELEGQL	9	Unmodified	_KIQELEGQL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;ENST00000464322.5_1_1:214787097-214788372:+|nuORF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2979736328125	2	529.298039	1056.58152	-0.45651	-0.00024163	0.60376	0.00031957	0.14725	7.7938E-05	529.2982819434776	50.856	0.94384	50.707	50.46	51.404	-0.14916					67	26	4	0	0	0	0.016542	1	5339	5339		154.12	12.598	1	4816200			31494	3658	21764	21805	36110	36110					0.055497082691545074
KIQELEGQL	9	Unmodified	_KIQELEGQL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant;ENST00000464322.5_1_1:214787097-214788372:+|nuORF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.298039	1056.58152	-0.85178	-0.00045085	1.0177	0.00053869	0.16596	8.7843E-05	529.2984418785701	50.624	1.2245	50.624	50.376	51.6	0	-0.010944	0.00036681	NaN	154.12	68	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4632300			31495	3658	21764	21805							0.055497082691545074
KIQGLKRP	8	Unmodified	_KIQGLKRP_					0	0	0			REV__ENSG00000071909|ENST00000408978|MYO3B	REV__ENSG00000071909|ENST00000408978|MYO3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.29595947265625	2	470.308544	938.602535	2.5153	0.001183	-2.4204	-0.0011383	0.094929	4.4646E-05	470.3065572327204	18.585	0.24321	18.585	18.431	18.674	0					6	4	2	0	0	0	0.027866	1	317	317		13.775	0.81615	1	17717	+		31496	20456	21765	21806	36111	36111					0.13077763159310507
KIQNLLPDDS	10	Unmodified	_KIQNLLPDDS_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.7279052734375	2	571.806228	1141.5979	0.32025	0.00018312	3.3101	0.0018927	3.6303	0.0020759	571.8076761363701	51.712	0.43769	51.593	51.431	51.869	-0.11875					20	11	2	0	0	0	0.03519	1	5323	5323		23.523	0	1	183080			31497	10798	21766	21807	36112	36112					0.03276789435244609
KIQNPKEKP	9	Unmodified	_KIQNPKEKP_					0	0	0		ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3215942382812	2	541.321848	1080.62914	-0.13686	-7.4083E-05	-0.92614	-0.00050134	-1.063	-0.00057542	541.3213201709734	60.049	2.0846	60.049	59.482	61.566	0					150	55	4	0	0	0	0.55828	1	6901	6901		55.504	4.3115	1	27771000			31498	4608	21767	21808	36113	36113					0.09205407259969434
KIQQPKSN	8	Unmodified	_KIQQPKSN_					0	0	0			REV__ENSG00000100226|ENST00000216044|GTPBP1	REV__ENSG00000100226|ENST00000216044|GTPBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7486267089844	2	471.771991	941.529429	-0.15457	-7.292E-05	3.9146	0.0018468	3.76	0.0017739	471.77198469758537	45.623	1.0284	45.471	45.145	46.174	-0.15156					81	29	5	0	0	0	0.027866	1	4408	4408		35.618	15.136	1	2379100	+		31499	21070	21768	21809	36114	36114					0.05632589646040742
KIQRRCHYI	9	Unmodified	_KIQRRCHYI_					0	0	0			REV__ENSG00000082515|ENST00000523037|MRPL22	REV__ENSG00000082515|ENST00000523037|MRPL22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58746337890625	3	406.229237	1215.66588	0.47194	0.00019172	1.6311	0.00066261	2.1031	0.00085433	406.22952121301336	25.103	0.81182	24.933	24.602	25.413	-0.17078					34	18	2	0	0	0	0.023239	1	1210	1210		74.255	58.248	1	1117000	+		31500	20697	21769	21810	36115	36115					0.0666738060492662
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8565673828125	2	597.858264	1193.70197	-1.6739	-0.0010008	-1.798	-0.001075	-3.4719	-0.0020757	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	0.99553	1	11798	11798		37.812	4.9991	1	4454900			31501	8951	21770	21811	36116	36116					0.11287116262747077
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8563842773438	2	597.858264	1193.70197	-1.0361	-0.00061944	-2.4468	-0.0014628	-3.4829	-0.0020823	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	0.96599	3	11777	11691;11715;11777		44.377	4.8125	1	4942300			31502	8951	21770	21811	36117;36118;36119	36119					0.11287116262747077
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8564453125	2	597.858264	1193.70197	-0.69485	-0.00041542	-2.7318	-0.0016332	-3.4267	-0.0020487	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.99553	1	11713	11713		37.812	3.639	1	4386000			31503	8951	21770	21811	36120	36120					0.11287116262747077
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8565673828125	2	597.858264	1193.70197	-1.8915	-0.0011309	-1.6048	-0.00095944	-3.4963	-0.0020903	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	0.99553	3	11379	11379;11450;11474		37.812	4.9169	1	5655800			31504	8951	21770	21811	36121;36122;36123	36121					0.11287116262747077
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8558349609375	2	597.858264	1193.70197	-0.56214	-0.00033608	-3.0322	-0.0018128	-3.5944	-0.0021489	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	1.0238	1	11362	11362		31.53	2.3598	1	5880700			31505	8951	21770	21811	36124	36124					0.11287116262747077
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8564453125	2	597.858264	1193.70197	-0.21005	-0.00012558	-3.4027	-0.0020343	-3.6127	-0.0021599	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	0.9728	3	11418	11394;11418;11430		42.864	9.9293	1	5598500			31506	8951	21770	21811	36125;36126;36127	36126					0.11287116262747077
KIQTIILKDIT	11	Unmodified	_KIQTIILKDIT_					0	0	0		ENST00000352159.8_1_10:90773121-90774204:+|nuORF;nc|ENSG00000026103|P25445-6|FAS;ENSG00000026103|ENST00000652046|FAS	ENST00000352159.8_1_10:90773121-90774204:+|nuORF	ENST00000352159.8_1_10:90773121-90774204:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	643.4043579101562	2	643.408121	1284.80169	-0.39061	-0.00025132	-2.1715	-0.0013971	-2.5621	-0.0016485	643.4067111550588	104.34	0.57573	104.21	104.02	104.6	-0.12927					54	17	4	0	0	0	1.0392	1	13023	13023		28.081	1.3886	1	2017700			31507	993	21771	21812	36128	36128					0.17067933876705865
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7901306152344	3	483.646391	1447.91734	-0.10584	-5.1187E-05	0.2153	0.00010413	0.10946	5.2942E-05	483.64639228958447	46.97	1.5774	46.97	46.733	48.311	0					192	45	5	0	0	0	0.02489	1	4799	4799		5.6988	4.6284	1	8088100			31508	12858	21772	21813	36129	36129					0.2113017924655196
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7903137207031	3	483.646391	1447.91734	0.11192	5.413E-05	0.021784	1.0536E-05	0.13371	6.4666E-05	483.6463164496376	47.188	1.41	47.035	46.817	48.227	-0.15301					166	40	5	0	0	0	0.024856	1	4811	4811		5.6988	0	1	5731000			31509	12858	21772	21813	36130	36130					0.2113017924655196
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.25372314453125	3	483.646391	1447.91734	0.28728	0.00013894	-0.14614	-7.0682E-05	0.14114	6.826E-05	483.6462418428208	52.591	0.77839	52.444	52.095	52.873	-0.14724					37	19	3	0	0	0	0.024809	1	5587	5587		17.167	8.3674	1	145650			31510	12858	21772	21813	36131	36131					0.2113017924655196
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.6465759277344	3	483.646391	1447.91734	0.025197	1.2187E-05	0.23362	0.00011299	0.25882	0.00012518	483.64642593124324	46.982	1.4851	46.713	46.526	48.011	-0.26939					176	40	5	0	0	0	1.1107	1	4577	4577		8.4073	1.7476	1	8321800			31511	12858	21772	21813	36132	36132					0.2113017924655196
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	483.646391	1447.91734	0.13595	6.5751E-05	1.2683	0.00061339	1.4042	0.00067914	483.9816704497442	52.622	0.44439	52.432	52.227	52.672	-0.18982	0.01795	0.0007742	NaN	17.167	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97667			31512	12858	21772	21813							0.2113017924655196
KIRDLLDV	8	Unmodified	_KIRDLLDV_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2544860839844	2	486.297842	970.581131	-0.10775	-5.24E-05	-0.354	-0.00017215	-0.46175	-0.00022455	486.2974711275081	64.385	0.89404	64.431	64.081	64.975	0.045502					36	23	2	0	0	0	0.027866	1	7532	7532		37.159	8.0096	1	1262200			31513	8075	21773	21814	36133	36133					0.09466333339946686
KIRELENSLH	10	Unmodified	_KIRELENSLH_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2275085449219	3	413.566571	1237.67788	-0.1933	-7.9943E-05	1.4952	0.00061837	1.3019	0.00053843	413.5670772170046	36.712	0.7223	36.496	36.165	36.888	-0.21661					50	17	4	0	0	0	0.03519	1	2944	2944		40.058	11.481	1	496680			31514	5284	21774	21815	36134	36134					0.06855275829070706
KIREQYGCL	9	Unmodified	_KIREQYGCL_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.772705078125	2	555.292233	1108.56991	-1.0336	-0.00057393	1.5798	0.00087726	0.54625	0.00030333	555.2931021185609	37.563	0.34785	37.343	37.231	37.579	-0.2195					10	8	2	0	0	0	0.024539	1	3009	3009		27.882	11.409	1	109430	+		31515	27726	21775	21816	36135	36135					0.019971879741660814
KIRFMINV	8	Unmodified	_KIRFMINV_					0	0	0		ENST00000497715.1_1_2:225338964-225343150:-|nuORF	ENST00000497715.1_1_2:225338964-225343150:-|nuORF	ENST00000497715.1_1_2:225338964-225343150:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7692565917969	2	510.80478	1019.59501	0.55397	0.00028297	-1.7927	-0.00091571	-1.2387	-0.00063274	510.80482761940954	85.717	1.7785	85.717	85.289	87.067	0					50	41	2	0	0	0	0.027866	1	10833	10833		47.916	0	1	652750			31516	15601	21776	21817	36136	36136					0.08599287567392366
KIRFQYEEGT	10	Unmodified	_KIRFQYEEGT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5180358886719	3	424.21906	1269.63535	-0.20117	-8.5341E-05	-0.12145	-5.1521E-05	-0.32262	-0.00013686	424.21888399726646	30.952	0.54465	30.711	30.41	30.954	-0.24109					23	12	3	0	0	0	0.03519	1	2011	2011		37.508	0	1	81792	+		31517	25017	21777	21818	36137	36137					0.011318807008365184
KIRGSGHK	8	Unmodified	_KIRGSGHK_					0	0	0			REV__ENST00000472220.1_1_2:105708813-105716216:+|nuORF	REV__ENST00000472220.1_1_2:105708813-105716216:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7879333496094	2	441.767043	881.519533	0.28444	0.00012566	-3.9256	-0.0017342	-3.6411	-0.0016085	441.7637922676105	41.459	1.119	41.459	40.835	41.954	0					52	31	4	0	0	0	0.027866	1	3650	3650		25.45	6.0902	1	534150	+		31518	23607	21778	21819	36138	36138					0.07403446431317207
KIRGSGHK	8	Unmodified	_KIRGSGHK_					0	0	0			REV__ENST00000472220.1_1_2:105708813-105716216:+|nuORF	REV__ENST00000472220.1_1_2:105708813-105716216:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.767043	881.519533	-0.028262	-1.2485E-05	-8.7519	-0.0038663	-8.7802	-0.0038788	441.7638238424257	41.662	0.64151	41.53	41.215	41.857	-0.1322	-0.026173	-0.0025659	NaN	25.45	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469200	+		31519	23607	21778	21819							0.07403446431317207
KIRLFTSDL	9	Unmodified	_KIRLFTSDL_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2803955078125	2	546.824224	1091.63389	0.22853	0.00012496	-0.88127	-0.0004819	-0.65275	-0.00035694	546.8238991176489	58.885	0.31277	58.644	58.502	58.814	-0.24165					12	7	2	0	0	0	0.024539	1	6498	6498		14.865	3.7681	1	163190			31520	1545	21779	21820	36139	36139					0.09174291402769086
KIRMCENEK	9	Unmodified	_KIRMCENEK_					0	0	0			REV__ENSG00000078295|ENST00000338316|ADCY2	REV__ENSG00000078295|ENST00000338316|ADCY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.7821655273438	2	575.789001	1149.56345	-1.3768	-0.00079274	2.1772	0.0012536	0.8004	0.00046086	576.2919068260803	65.671	0.45633	65.457	65.255	65.712	-0.21327					19	10	2	0	0	0	0.024427	1	7507	7507		26.693	0	1	203000	+		31521	20609	21780	21821	36140	36140					-0.005350732488750509
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.3443603515625	2	561.345126	1120.6757	-0.8688	-0.0004877	0.56056	0.00031467	-0.30824	-0.00017303	561.3452955077396	60.66	0.79919	60.406	60.132	60.931	-0.25373					53	19	4	0	0	0	0.43973	1	6745	6745		63.306	22.734	1	1266000			31522	3425	21781	21822	36141	36141					0.12018891881939453
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.345126	1120.6757	-0.98987	-0.00055566	0.31621	0.00017751	-0.67365	-0.00037815	561.345016526524	60.46	0.43591	60.46	60.294	60.73	0	0.0093578	-0.00027579	NaN	63.306	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253840			31523	3425	21781	21822							0.12018891881939453
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	561.345126	1120.6757	-0.91162	-0.00051173	0.26614	0.0001494	-0.64547	-0.00036233	561.3451672294545	60.788	0.52648	60.575	60.347	60.873	-0.2134	0.12368	-0.00033201	NaN	63.306	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226220			31524	3425	21781	21822							0.12018891881939453
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	561.345126	1120.6757	-1.9092	-0.0010717	1.2776	0.0007172	-0.63153	-0.00035451	561.3456720193917	60.443	0.48646	60.522	60.392	60.879	0.078888	0.070754	0.00080359	NaN	63.306	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184290			31525	3425	21781	21822							0.12018891881939453
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	561.345126	1120.6757	-0.39471	-0.00022157	0.34244	0.00019223	-0.05227	-2.9342E-05	561.3451353792289	60.635	0.75615	60.429	60.172	60.928	-0.20599	-0.021567	-0.00024635	NaN	63.306	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1243800			31526	3425	21781	21822							0.12018891881939453
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.345126	1120.6757	-0.8431	-0.00047327	0.76084	0.00042709	-0.08226	-4.6176E-05	561.3453896824734	60.49	0.7962	60.314	60.037	60.833	-0.1761	-0.13721	0.00022338	NaN	63.306	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1309000			31527	3425	21781	21822							0.12018891881939453
KIRRRWFLP	9	Unmodified	_KIRRRWFLP_					0	0	0		ENST00000560857.1_1_15:60318033-60328380:+|nuORF	ENST00000560857.1_1_15:60318033-60328380:+|nuORF	ENST00000560857.1_1_15:60318033-60328380:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.7348327636719	3	424.59977	1270.77748	-0.017731	-7.5285E-06	-0.83646	-0.00035516	-0.85419	-0.00036269	424.5993423432119	36.798	0.8	36.836	36.545	37.345	0.038044					55	20	4	0	0	0	0.024541	1	2975	2975		9.1829	0	1	422320			31528	16809	21782	21823	36142	36142					0.1529218302434856
KIRRTAAK	8	Unmodified	_KIRRTAAK_					0	0	0			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.3109436035156	2	472.311618	942.608683	0.15488	7.3154E-05	-4.2578	-0.002011	-4.103	-0.0019379	472.30959735486283	34.507	0.4146	34.507	34.371	34.785	0					16	10	2	0	0	0	0.027866	1	2577	2577		23.042	5.6775	1	392580	+		31529	26987	21783	21824	36143	36143					0.13508281390841148
KIRSNQQL	8	Unmodified	_KIRSNQQL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.79022216796875	2	493.790715	985.566878	0.062425	3.0825E-05	-0.53318	-0.00026328	-0.47076	-0.00023246	493.7904851807459	24.162	1.0359	24.24	23.649	24.685	0.078344					88	22	6	0	0	0	0.6536	1	979	979		71.296	4.8664	1	1349400			31530	9286	21784	21825	36144	36144					0.07351680911654057
KIRVREDK	8	Unmodified	_KIRVREDK_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7903442382812	2	522.31964	1042.62473	0.2309	0.0001206	1.8694	0.00097645	2.1003	0.001097	522.3202733776255	70.668	0.86086	70.668	70.44	71.301	0					34	20	4	0	0	0	0.027866	1	8518	8518		44.117	12.162	1	583700	+		31531	26603	21785	21826	36145	36145					0.1051194283706991
KIRWKNID	8	Unmodified	_KIRWKNID_					0	0	0			REV__nc|ENSG00000135318|P21589-2|NT5E	REV__nc|ENSG00000135318|P21589-2|NT5E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2827758789062	2	536.816733	1071.61891	-0.45353	-0.00024346	-1.1397	-0.00061181	-1.5932	-0.00085527	536.8161947093561	66.012	0.60782	65.77	65.5	66.108	-0.24145					36	14	4	0	0	0	0.027866	1	7571	7571		63.306	0	1	671440	+		31532	23529	21786	21827	36146	36146					0.08596844325415987
KIRYKMAN	8	Unmodified	_KIRYKMAN_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|44|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|44|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|44|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2353515625	2	512.292037	1022.56952	-0.482	-0.00024692	-2.4568	-0.0012586	-2.9388	-0.0015055	512.7926315655099	57.11	0.8101	56.942	56.558	57.369	-0.1672					67	21	4	0	0	0	0.027866	1	6276	6276		52.299	13.046	1	931570			31533	17890	21787	21828	36147	36147					0.05913813044946892
KISDARQSC	9	Unmodified	_KISDARQSC_					0	0	0			REV__ENSG00000009709|ENST00000420770|PAX7	REV__ENSG00000009709|ENST00000420770|PAX7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.26165771484375	2	504.250566	1006.48658	0.20829	0.00010503	-3.7182	-0.0018749	-3.51	-0.0017699	504.24986365273423	71.387	0.69519	71.112	70.699	71.394	-0.2751					27	15	3	0	0	0	0.018983	1	8272	8272		116.9	18.274	1	140200	+		31534	19894	21788	21829	36148	36148					-0.01640548473699255
KISDARQSC	9	Unmodified	_KISDARQSC_					0	0	0			REV__ENSG00000009709|ENST00000420770|PAX7	REV__ENSG00000009709|ENST00000420770|PAX7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2624206542969	2	504.250566	1006.48658	-0.050863	-2.5648E-05	-2.6339	-0.0013281	-2.6848	-0.0013538	504.24948935469524	71.389	0.91704	71.127	70.602	71.52	-0.26199					36	21	2	0	0	0	0.021513	1	8287	8287		104.75	0	1	134280	+		31535	19894	21788	21829	36149	36149					-0.01640548473699255
KISDLCVALS	10	Unmodified	_KISDLCVALS_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3092651367188	2	524.788992	1047.56343	0.14146	7.4238E-05	-3.4517	-0.0018114	-3.3103	-0.0017372	524.7871647597912	74.516	0.63257	74.257	73.986	74.619	-0.25887					26	14	2	0	0	0	0.03519	1	9049	9049		44.377	11.565	1	500590			31536	2394	21789	21830	36150	36150					0.041552500227680866
KISEVVELL	9	Unmodified	_KISEVVELL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.31298828125	2	515.313158	1028.61176	-0.2248	-0.00011584	-0.49202	-0.00025354	-0.71682	-0.00036938	515.3128662198355	68.197	1.2925	68.197	67.606	68.898	0					93	33	4	0	0	0	0.025498	1	8154	8154		145.16	54.786	1	25876000			31537	3516	21790	21831	36151	36151					0.098600669343341
KISEVVELL	9	Unmodified	_KISEVVELL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3128662109375	2	515.313158	1028.61176	0.10623	5.4741E-05	-0.67788	-0.00034932	-0.57165	-0.00029458	515.3127351387494	68.562	1.1914	68.27	67.705	68.897	-0.29267					84	30	4	0	0	0	0.013065	3	8189	8172;8189;8207		171.53	54.786	1	23026000			31538	3516	21790	21831	36152;36153;36154	36153					0.098600669343341
KISEVVELL	9	Unmodified	_KISEVVELL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.312744140625	2	515.313158	1028.61176	-0.12465	-6.4235E-05	-0.49881	-0.00025704	-0.62346	-0.00032128	515.3128506642441	68.298	0.90396	68.317	67.93	68.833	0.018913					77	23	4	0	0	0	0.015752	4	8111	8088;8099;8111;8123		200.16	83.253	1	23008000			31539	3516	21790	21831	36155;36156;36157;36158	36157					0.098600669343341
KISEVVELL	9	Unmodified	_KISEVVELL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.313158	1028.61176	-0.56694	-0.00029215	-3.7347	-0.0019245	-4.3016	-0.0022167	515.3131622411858	68.552	0.60507	68.29	68.021	68.626	-0.26166	0.032324	-0.0032353	NaN	171.53	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555340			31540	3516	21790	21831							0.098600669343341
KISEVVELL	9	Unmodified	_KISEVVELL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.313158	1028.61176	0.42284	0.0002179	-4.5124	-0.0023253	-4.0896	-0.0021074	515.3126224504942	68.484	0.47723	68.241	67.992	68.47	-0.24277	-0.016871	-0.0040369	NaN	171.53	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	746420			31541	3516	21790	21831							0.098600669343341
KISEVVELL	9	Unmodified	_KISEVVELL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.313158	1028.61176	0.48942	0.00025221	-4.65	-0.0023962	-4.1606	-0.002144	515.3124746929636	68.463	0.68382	68.232	67.875	68.559	-0.23048	-0.025423	-0.0041787	NaN	171.53	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575530			31542	3516	21790	21831							0.098600669343341
KISFYIPPP	9	Unmodified	_KISFYIPPP_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2942504882812	2	531.305136	1060.59572	0.12946	6.8781E-05	-3.6305	-0.0019289	-3.5011	-0.0018601	531.3030171542689	77.791	0.4116	77.58	77.418	77.83	-0.21087					16	9	2	0	0	0	0.024381	1	9607	9607		37.159	0	1	166600			31543	4385	21791	21832	36159	36159					0.06784405488065204
KISHVVSFSSQ	11	Unmodified	_KISHVVSFSSQ_					0	0	0		ENSG00000254469|ENST00000679412|XNDC1N;nc|ENSG00000289716|Q6ZNB5-2|XNDC1N	ENSG00000254469|ENST00000679412|XNDC1N	ENSG00000254469|ENST00000679412|XNDC1N	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.8790283203125	3	406.887422	1217.64044	3.5462	0.0014429	0.7274	0.00029597	4.2736	0.0017389	406.8873441054786	19.827	0.23489	19.893	19.783	20.018	0.066195					6	4	2	0	0	0	0.024758	1	431	431		48.188	16.554	1	16199			31544	10878	21792	21833	36160	36160					0.04032184563470764
KISILTTYN	9	Unmodified	_KISILTTYN_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8020629882812	2	526.802957	1051.59136	-0.9052	-0.00047686	0.54067	0.00028482	-0.36453	-0.00019204	526.8031501488817	76.288	0.8439	76.288	75.956	76.799	0					54	20	3	0	0	0	0.70156	1	9434	9434		45.972	3.5761	1	3157600			31545	961	21793	21834	36161	36161					0.06762896274494778
KISILTTYN	9	Unmodified	_KISILTTYN_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8021850585938	2	526.802957	1051.59136	0.42741	0.00022516	-0.77063	-0.00040597	-0.34322	-0.00018081	526.802395744007	76.326	0.84262	76.338	76.015	76.857	0.011642					60	20	4	0	0	0	0.34489	1	9369	9369		69.628	10.846	1	2897200			31546	961	21793	21834	36162	36162					0.06762896274494778
KISLTQVLD	9	Unmodified	_KISLTQVLD_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.80584716796875	2	508.802957	1015.59136	-0.84859	-0.00043176	0.98415	0.00050074	0.13556	6.8974E-05	508.8034184600352	34.54	0.68944	34.59	34.367	35.056	0.050255					29	17	3	0	0	0	0.024021	1	2521	2521		68.787	6.6794	1	140890			31547	1818;17643	21794	21835	36163	36163					0.08418896274520193
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8347778320312	2	545.834591	1089.65463	-1.0799	-0.00058944	0.10293	5.6183E-05	-0.97695	-0.00053325	545.8347338421073	48.624	2.0602	48.523	48.147	50.207	-0.1008					182	54	7	0	0	0	0.03201	5	4814	4814;4822;4847;4872;4886		139.97	16.389	1	27031000			31548	1757	21795	21836	36164;36165;36166;36167;36168	36164					0.11338881782421595
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.8341064453125	2	545.834591	1089.65463	-0.74826	-0.00040843	-0.22925	-0.00012513	-0.97751	-0.00053356	545.8345524002586	48.946	2.0814	48.666	48.359	50.44	-0.27977					179	55	7	0	0	0	0.015752	6	4863	4854;4863;4876;4889;4901;4915		158.07	23.264	1	31182000			31549	1757	21795	21836	36169;36170;36171;36172;36173;36174	36170					0.11338881782421595
KISNIIKQF	9	Unmodified	_KISNIIKQF_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.8346557617188	2	545.834591	1089.65463	-0.69991	-0.00038204	-0.3236	-0.00017663	-1.0235	-0.00055867	545.834501218622	48.759	2.4102	48.577	48.198	50.608	-0.18206					182	64	7	0	0	0	0.016758	5	4839	4828;4839;4852;4864;4876		153.04	30.86	1	25631000			31550	1757	21795	21836	36175;36176;36177;36178;36179	36176					0.11338881782421595
KISNTAISI	9	Unmodified	_KISNTAISI_					0	0	0		ENSG00000159131|ENST00000381815|GART;nc|ENSG00000159131|P22102-2|GART;ENST00000476524.1_1_21:34903719-34911621:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7822570800781	2	473.782025	945.549496	0.36695	0.00017385	-0.51322	-0.00024316	-0.14628	-6.9303E-05	473.7816451958831	47.691	0.5406	47.691	47.43	47.971	0					48	16	4	0	0	0	0.053401	1	4805	4805		127.46	20.454	1	3549100			31551	6720	21796	21837	36180	36180					0.07454340585979935
KISNTAISI	9	Unmodified	_KISNTAISI_					0	0	0		ENSG00000159131|ENST00000381815|GART;nc|ENSG00000159131|P22102-2|GART;ENST00000476524.1_1_21:34903719-34911621:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.78240966796875	2	473.782025	945.549496	0.17648	8.3614E-05	-0.31854	-0.00015092	-0.14206	-6.7306E-05	473.7817458317726	47.871	0.5151	47.718	47.441	47.957	-0.15301					49	15	4	0	0	0	0.015752	1	4810	4810		158.07	39.332	1	3773300			31552	6720	21796	21837	36181	36181					0.07454340585979935
KISNTAISI	9	Unmodified	_KISNTAISI_					0	0	0		ENSG00000159131|ENST00000381815|GART;nc|ENSG00000159131|P22102-2|GART;ENST00000476524.1_1_21:34903719-34911621:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.78192138671875	2	473.782025	945.549496	-0.47132	-0.00022331	0.26956	0.00012771	-0.20177	-9.5593E-05	473.782005030055	47.602	0.47173	47.661	47.423	47.895	0.059093					45	14	4	0	0	0	0.025498	1	4730	4730		145.16	29.662	1	3891400			31553	6720	21796	21837	36182	36182					0.07454340585979935
KISPFFLA	8	Unmodified	_KISPFFLA_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7735595703125	2	461.773471	921.53239	-0.19799	-9.1426E-05	0.2593	0.00011974	0.061307	2.831E-05	461.7734638822048	102.02	0.88459	102.02	101.68	102.57	0					36	19	3	0	0	0	0.96769	1	13074	13074		42.396	8.8806	1	1147700			31554	11958	21797	21838	36183	36183					0.06848464770837381
KISPFFLA	8	Unmodified	_KISPFFLA_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.7735900878906	2	461.773471	921.53239	0.44825	0.00020699	-0.78651	-0.00036319	-0.33826	-0.0001562	461.7731441179029	101.84	0.77296	101.71	101.45	102.23	-0.13156					46	18	4	0	0	0	1.0574	1	12662	12662		27.882	2.3082	1	575760			31555	11958	21797	21838	36184	36184					0.06848464770837381
KISPLLPSL	9	Unmodified	_KISPLLPSL_					0	0	0			REV__nc|ENSG00000137337|Q14676-3|MDC1	REV__nc|ENSG00000137337|Q14676-3|MDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.3128662109375	2	484.312961	966.611368	0.32462	0.00015722	-0.57586	-0.0002789	-0.25124	-0.00012168	484.31246372669887	99.613	0.77578	99.613	99.135	99.91	0					44	17	3	0	0	0	0.1158	2	12729	12707;12729		107.01	2.261	1	1008200	+		31556	23748	21798	21839	36185;36186	36186					0.12672692005139652
KISPLLPSL	9	Unmodified	_KISPLLPSL_					0	0	0			REV__nc|ENSG00000137337|Q14676-3|MDC1	REV__nc|ENSG00000137337|Q14676-3|MDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.3128967285156	2	484.312961	966.611368	0.020142	9.7552E-06	-0.69318	-0.00033571	-0.67303	-0.00032596	484.31221817997033	99.631	2.0202	99.626	99.21	101.23	-0.0050888					75	50	3	0	0	0	0.077175	1	12664	12664		118.74	1.8395	1	1132000	+		31557	23748	21798	21839	36187	36187					0.12672692005139652
KISQGWRV	8	Unmodified	_KISQGWRV_					0	0	0			REV__DNAH11|p.I3391V|1|0.55|ENSG00000105877|chr7:21807888-21807888|A/G|missense_variant	REV__DNAH11|p.I3391V|1|0.55|ENSG00000105877|chr7:21807888-21807888|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2499694824219	2	487.282526	972.550499	-0.53684	-0.00026159	1.2883	0.00062775	0.75143	0.00036616	487.2827434095588	26.285	0.70517	26.262	25.864	26.569	-0.023088					25	16	2	0	0	0	0.027866	1	1286	1286		38.806	0.99462	1	184310	+		31558	19685	21799	21840	36188	36188					0.06312599745569969
KISSPSGVSNN	11	Unmodified	_KISSPSGVSNN_					0	0	0			REV__ENSG00000204815|ENST00000377540|ODAD4	REV__ENSG00000204815|ENST00000377540|ODAD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2989501953125	2	545.280377	1088.5462	-1.01	-0.00055073	3.8429	0.0020955	2.8329	0.0015447	545.2818518143783	53.614	0.23685	53.478	53.393	53.63	-0.13617					11	6	2	0	0	0	0.024787	1	5653	5653		41.427	0	1	291180	+		31559	28636	21800	21841	36189	36189					0.0054704574135939765
KISTLVMTN	9	Unmodified	_KISTLVMTN_					0	0	0			REV__nc|ENSG00000163482|Q9NRP7-2|STK36	REV__nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.78717041015625	2	503.78371	1005.55287	0.92018	0.00046357	-3.5617	-0.0017943	-2.6415	-0.0013307	503.78179354657516	87.6	0.8495	87.618	87.303	88.153	0.018585					52	20	4	0	0	0	0.024511	1	10922	10922		25.574	3.6142	1	1394200	+		31560	25572	21801	21842	36190	36190					0.0503126736834929
KITGRIAIRAL	11	Unmodified	_KITGRIAIRAL_					0	0	0			REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.5682373046875	3	404.603068	1210.78738	0.4287	0.00017345	0.38736	0.00015673	0.81606	0.00033018	404.603309664621	42.401	0.30444	42.269	42.082	42.386	-0.13219					11	8	2	0	0	0	0.024734	1	3863	3863		27.644	0.59661	1	63916	+		31561	28552	21802	21843	36191	36191					0.19041326239062073
KITKLLRI	8	Unmodified	_KITKLLRI_					0	0	0			REV__nc|ENSG00000100151|Q9NRD5-2|PICK1	REV__nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.77642822265625	2	492.850045	983.685536	0.459	0.00022622	-0.55657	-0.00027431	-0.097577	-4.8091E-05	492.8496454868002	32.367	0.92263	32.174	31.856	32.779	-0.19261					45	21	3	0	0	0	0.027866	1	2249	2249		38.806	0	1	536380	+		31562	21056	21803	21844	36192	36192					0.1930407988730849
KITPLKTCF	9	Unmodified	_KITPLKTCF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7698974609375	2	525.804445	1049.59434	-0.24628	-0.0001295	1.0756	0.00056558	0.82936	0.00043608	525.8059362006767	34.137	0.19438	33.913	33.803	33.997	-0.22412					7	4	2	0	0	0	0.024418	1	2482	2482		45.972	3.5761	1	28736			31563	7127	21804	21845	36193	36193					0.07152448127681055
KITPTPFGE	9	Unmodified	_KITPTPFGE_					0	0	0			REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	REV__L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2507629394531	2	495.26875	988.522947	0.18908	9.3646E-05	-2.7445	-0.0013593	-2.5554	-0.0012656	495.2677202720548	68.688	0.24356	68.457	68.316	68.559	-0.23048					7	5	2	0	0	0	0.023817	1	7944	7944		51.335	9.9088	1	42905	+		31564	28514	21805	21846	36194	36194					0.02822651694657452
KITSVLYNA	9	Unmodified	_KITSVLYNA_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7713623046875	2	504.78985	1007.56515	-0.41064	-0.00020729	0.19664	9.9259E-05	-0.214	-0.00010803	504.78971856231715	49.118	0.38997	48.965	48.864	49.254	-0.15277					18	10	2	0	0	0	0.024438	1	5036	5036		22.58	0	1	264550			31565	2496	21806	21847	36195	36195					0.06166627103027622
KITTVIQHV	9	Unmodified	_KITTVIQHV_					0	0	0		ENST00000510742.1_1_5:68503946-68505623:+|nuORF;ENSG00000153044|ENST00000283006|CENPH	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8189697265625	2	519.818941	1037.62333	-1.2068	-0.00062729	0.81927	0.00042587	-0.38748	-0.00020142	519.8193591969554	38.533	1.729	38.533	38.222	39.951	0					98	47	4	0	0	0	0.016542	3	3242	3230;3242;3254		154.12	79.863	1	8850000			31566	6313	21807	21848	36196;36197;36198	36197					0.10602308748298128
KITTVIQHV	9	Unmodified	_KITTVIQHV_					0	0	0		ENST00000510742.1_1_5:68503946-68505623:+|nuORF;ENSG00000153044|ENST00000283006|CENPH	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8189697265625	2	519.818941	1037.62333	-0.68177	-0.0003544	0.16878	8.7734E-05	-0.51299	-0.00026666	519.8190537853776	38.583	2.1899	38.501	38.083	40.273	-0.082516					126	59	4	0	0	0	0.030064	4	3235	3213;3223;3235;3248		141.52	69.643	1	7344500			31567	6313	21807	21848	36199;36200;36201;36202	36201					0.10602308748298128
KITTVIQHV	9	Unmodified	_KITTVIQHV_					0	0	0		ENST00000510742.1_1_5:68503946-68505623:+|nuORF;ENSG00000153044|ENST00000283006|CENPH	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.819091796875	2	519.818941	1037.62333	-1.5476	-0.0008045	0.95231	0.00049503	-0.59534	-0.00030947	519.8194833011721	38.8	1.4824	38.827	38.429	39.912	0.027275					101	40	4	0	0	0	0.030064	5	3221	3200;3209;3221;3233;3246		141.52	69.578	1	7255700			31568	6313	21807	21848	36203;36204;36205;36206;36207	36205					0.10602308748298128
KITTVIQHV	9	Unmodified	_KITTVIQHV_					0	0	0		ENST00000510742.1_1_5:68503946-68505623:+|nuORF;ENSG00000153044|ENST00000283006|CENPH	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.818941	1037.62333	-1.2815	-0.00066616	0.44574	0.0002317	-0.83579	-0.00043446	519.8191108170264	38.558	0.26331	38.379	38.237	38.5	-0.17929	-0.15001	-9.5891E-05	NaN	154.12	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99461			31569	6313	21807	21848							0.10602308748298128
KITTVIQHV	9	Unmodified	_KITTVIQHV_					0	0	0		ENST00000510742.1_1_5:68503946-68505623:+|nuORF;ENSG00000153044|ENST00000283006|CENPH	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.818941	1037.62333	-0.045475	-2.3639E-05	-0.2228	-0.00011582	-0.26828	-0.00013946	519.8187233428016	38.624	0.23779	38.403	38.25	38.488	-0.22153	-0.12583	-0.00079093	NaN	154.12	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62536			31570	6313	21807	21848							0.10602308748298128
KITVLPAPP	9	Unmodified	_KITVLPAPP_					0	0	0		ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.2889099121094	2	468.299853	934.585153	-0.69363	-0.00032483	0.85205	0.00039901	0.15842	7.4186E-05	468.30010597565155	48.676	0.39907	48.575	48.219	48.618	-0.1008					17	10	2	0	0	0	0.024436	1	4849	4849		38.806	1.647	1	256010			31571	7787	21808	21849	36208	36208					0.11524422833645076
KITVTPSSK	9	Unmodified	_KITVTPSSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.7680358886719	2	480.78985	959.565146	-0.39704	-0.00019089	0.099305	4.7745E-05	-0.29774	-0.00014315	480.78975434287264	44.107	0.49623	44.003	43.853	44.349	-0.10468					18	13	2	0	0	0	0.024409	1	4128	4128		33.922	8.3476	1	295630			31572	2483	21809	21850	36209	36209					0.08374627103057719
KITYGDVM	8	Unmodified	_KITYGDVM_					0	0	0		ENST00000415277.2_1_7:75104002-75113489:-|nuORF;ENST00000398379.2_1_7:75104068-75113489:-|nuORF;ENST00000395270.5_1_7:72350354-72361506:+|nuORF	ENST00000415277.2_1_7:75104002-75113489:-|nuORF	ENST00000415277.2_1_7:75104002-75113489:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2477722167969	2	463.736228	925.457904	1.0869	0.00050405	3.0602	0.0014191	4.1471	0.0019232	463.73847557795517	33.328	0.39735	33.384	33.141	33.538	0.056568					13	10	2	0	0	0	0.027866	1	2318	2318		18.324	4.5491	1	39940			31573	13511	21810	21851	36210	36210					-0.007806661028325834
KIVDFSYSV	9	Unmodified	_KIVDFSYSV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000453867.6_3_15:40509736-40545453:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.2817993164062	2	529.281857	1056.54916	-0.35395	-0.00018734	-1.2837	-0.00067943	-1.6376	-0.00086676	529.2818194544243	62.132	0.98989	61.918	61.293	62.283	-0.21375					56	24	3	0	0	0	0.086035	1	6975	6975		115.49	38.176	1	1744000			31574	6563	21811	21852	36211	36211					0.023149208661379816
KIVDFSYSV	9	Unmodified	_KIVDFSYSV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000453867.6_3_15:40509736-40545453:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.281494140625	2	529.281857	1056.54916	-1.2014	-0.00063586	-0.89351	-0.00047292	-2.0949	-0.0011088	529.2820138995431	62.051	1.2628	61.873	61.12	62.383	-0.17781					77	31	3	0	0	0	0.03666	1	6980	6980		136.27	58.951	1	1912600			31575	6563	21811	21852	36212	36212					0.023149208661379816
KIVDFSYSV	9	Unmodified	_KIVDFSYSV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000453867.6_3_15:40509736-40545453:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2825317382812	2	529.281857	1056.54916	-0.20134	-0.00010657	-1.6565	-0.00087674	-1.8578	-0.0009833	529.2815801895363	62.209	1.0277	61.952	61.301	62.328	-0.25725					65	25	3	0	0	0	0.247	1	6987	6987		82.75	18.543	1	1580700			31576	6563	21811	21852	36213	36213					0.023149208661379816
KIVDQNSMD	9	Unmodified	_KIVDQNSMD_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7;REV__nc|ENSG00000116106|P54764-2|EPHA4	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3093872070312	2	525.250231	1048.48591	0.71173	0.00037383	4.2214	0.0022173	4.9331	0.0025911	525.2500672831352	71.419	0.80544	71.213	70.615	71.42	-0.20613					28	18	3	0	0	0	0.024405	1	8337	8337		27.882	12.24	1	230630	+		31577	23531;22256	21812	21853	36214	36214					-0.0363938791340388
KIVERGLLP	9	Unmodified	_KIVERGLLP_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3085327148438	2	512.829309	1023.64407	0.36941	0.00018944	-1.0375	-0.00053205	-0.66807	-0.00034261	512.8287039459312	54.263	0.73037	54.361	54.077	54.807	0.098015					49	20	3	0	0	0	0.023837	1	5869	5869		64.207	14.766	1	987260	+		31578	19690	21813	21854	36215	36215					0.13318899127989425
KIVFVISEV	9	Unmodified	_KIVFVISEV_					0	0	0			REV__ENST00000366553.2_2_1:241797840-241798005:-|nuORF	REV__ENST00000366553.2_2_1:241797840-241798005:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2994384765625	2	517.318243	1032.62193	-0.15929	-8.2401E-05	2.2673	0.0011729	2.108	0.0010905	517.3191978538748	68.064	1.6485	68.083	67.743	69.392	0.018913					110	43	4	0	0	0	0.023635	1	8035	8035		87.754	16.459	1	12270000	+		31579	30975	21814	21855	36216	36216					0.10692674659571821
KIVGVTTE	8	Unmodified	_KIVGVTTE_					0	0	0		nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-3|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;ENST00000508343.1_1_5:14498325-14498811:+|nuORF	nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5181884765625	2	423.750193	845.485833	-0.22428	-9.5039E-05	2.0595	0.00087271	1.8352	0.00077767	423.7507072761865	30.957	0.42165	30.716	30.453	30.875	-0.24109					16	9	3	0	0	0	0.027866	1	2023	2023		47.916	17.412	1	138780			31580	1053	21815	21856	36217	36217					0.05690980148892777
KIVIEPAL	8	Unmodified	_KIVIEPAL_					0	0	0			REV__ENSG00000053900|ENST00000315368|ANAPC4	REV__ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7679138183594	2	441.786579	881.558604	0.37525	0.00016578	-0.40278	-0.00017794	-0.027527	-1.2161E-05	441.78640570186167	102.78	0.11628	102.78	102.68	102.79	-0.0046005					4	2	2	0	0	0	0.027866	1	13090	13090		26.796	7.4361	1	166850	+		31581	20183	21816	21857	36218	36218					0.11308733942303206
KIVIIGNP	8	Unmodified	_KIVIIGNP_					0	0	0			REV__ENSG00000148335|ENST00000372483|NTMT1	REV__ENSG00000148335|ENST00000372483|NTMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.3027038574219	2	427.278921	852.543289	0.092242	3.9413E-05	0.29101	0.00012434	0.38325	0.00016375	427.2790164280131	66.561	0.38251	66.312	66.021	66.404	-0.24839					13	9	2	0	0	0	0.027866	1	7643	7643		16.473	0	1	106140	+		31582	24607	21817	21858	36219	36219					0.11111867145132237
KIVKGAHL	8	Unmodified	_KIVKGAHL_					0	0	0			REV__chr2:113058743-113059412|455|21.6|0.57|5.24|+|ENST00000346807|IL36RN,IL36RN	REV__chr2:113058743-113059412|455|21.6|0.57|5.24|+|ENST00000346807|IL36RN,IL36RN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2551574707031	2	433.284537	864.554522	0.67618	0.00029298	-0.1677	-7.2662E-05	0.50848	0.00022032	433.284686227325	103.06	0.3203	102.89	102.8	103.12	-0.17034					12	7	2	0	0	0	0.027866	1	12820	12820		37.028	8.7742	1	1932300	+		31583	19400	21818	21859	36220	36220					0.11682689239262345
KIVKHAMAH	9	Unmodified	_KIVKHAMAH_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.788818359375	2	517.800029	1033.5855	-0.96038	-0.00049729	-1.4759	-0.0007642	-2.4362	-0.0012615	517.7991779063484	53.402	0.71315	53.498	53.161	53.874	0.095669					32	19	2	0	0	0	0.024466	1	5699	5699		33.516	6.8227	1	97634	+		31584	26857	21819	21860	36221	36221					0.07005519281847228
KIVKKVAD	8	Unmodified	_KIVKKVAD_					0	0	0			REV__ENST00000466999.1_1_20:2640164-2640466:-|nuORF	REV__ENST00000466999.1_1_20:2640164-2640466:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2686462402344	2	450.797478	899.580402	-1.0308	-0.0004647	-1.5872	-0.00071551	-2.6181	-0.0011802	450.7967809611568	38.079	0.29689	38.079	37.902	38.199	0					15	8	2	0	0	0	0.027866	1	3173	3173		17.365	0	1	196600	+		31585	21227	21820	21861	36222	36222					0.12659538690888894
KIVLIMAGT	9	Unmodified	_KIVLIMAGT_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.3108825683594	2	473.293714	944.572874	0.12969	6.138E-05	-4.0139	-0.0018998	-3.8843	-0.0018384	473.29162925912516	43.103	0.47236	42.99	42.815	43.288	-0.11253					16	12	2	0	0	0	0.024405	1	3937	3937		35.618	11.416	1	126860			31586	9482;18594	21821	21862	36223	36223					0.09837063098962062
KIVLIMAGT	9	Unmodified	_KIVLIMAGT_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.293714	944.572874	-0.21219	-0.00010043	-8.4795	-0.0040133	-8.6917	-0.0041137	473.28968674815894	42.896	0.19831	42.658	42.561	42.759	-0.23736	-0.16602	-0.0016423	NaN	35.618	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88668			31587	9482;18594	21821	21862							0.09837063098962062
KIVNPPKDLKK	11	Unmodified	_KIVNPPKDLKK_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2644958496094	3	427.274729	1278.80236	0.49956	0.00021345	2.8846	0.0012325	3.3842	0.001446	427.27650786327837	53.825	0.68731	53.92	53.736	54.424	0.095669					44	19	3	0	0	0	0.024779	1	5855	5855		16.53	1.1967	1	883890			31588	5433	21822	21863	36224	36224					0.17410773316396444
KIVNYYSKT	9	Unmodified	_KIVNYYSKT_					0	0	0		BICD2-IPPK|1|fusion;ENSG00000127080|ENST00000287996|IPPK;ENST00000486841.1_1_9:95378116-95381853:-|nuORF	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.27001953125	2	558.308406	1114.60226	-0.69878	-0.00039013	1.1098	0.00061959	0.41099	0.00022946	558.3087970264577	62.932	0.24842	62.932	62.769	63.018	0					7	5	2	0	0	0	0.024447	1	7320	7320		32.812	13.709	1	105270			31589	185	21823	21864	36225	36225					0.04954298648794975
KIVPGLIGLHA	11	Unmodified	_KIVPGLIGLHA_					0	0	0			REV__ENSG00000181333|ENST00000315765|HEPHL1	REV__ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3113403320312	2	559.358234	1116.70191	0.61126	0.00034191	-1.8922	-0.0010584	-1.2809	-0.0007165	559.3574297856964	51.512	0.32891	51.397	51.285	51.614	-0.11494					9	8	2	0	0	0	0.024783	1	5334	5334		42.396	14.514	1	123850	+		31590	27397	21824	21865	36226	36226					0.1482316105341397
KIVSTLLFI	9	Unmodified	_KIVSTLLFI_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.319580078125	2	517.336436	1032.65832	-0.16654	-8.6157E-05	-2.0808	-0.0010765	-2.2474	-0.0011626	517.3354057328404	68.042	0.22488	68.061	67.855	68.08	0.018913					8	5	2	0	0	0	0.0242	1	8063	8063		60.118	0	1	240960			31591	10865	21825	21866	36227	36227					0.1432955155628406
KIVVKAGCH	9	Unmodified	_KIVVKAGCH_					0	0	0		ENST00000249442.10_1_2:177202345-177202405:+|nuORF	ENST00000249442.10_1_2:177202345-177202405:+|nuORF	ENST00000249442.10_1_2:177202345-177202405:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7972717285156	2	477.781305	953.548056	0.42105	0.00020117	-0.6377	-0.00030468	-0.21665	-0.00010351	477.7807151623278	96.637	0.2205	96.637	96.527	96.748	0					6	4	2	0	0	0	0.024541	1	12314	12314		24.203	6.8378	1	19126			31592	11342	21826	21867	36228	36228					0.06942428016247959
KIWEIQIMRKI	11	Unmodified	_KIWEIQIMRKI_					0	0	0			REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	REV__nc|ENSG00000164509|Q8NI17-7|IL31RA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.62579345703125	3	486.626885	1456.85883	0.69857	0.00033994	0.28987	0.00014106	0.98844	0.000481	486.62696520319025	105.39	0.34991	105.23	104.98	105.33	-0.16484					21	11	2	0	0	0	1.0712	1	13110	13110		19.263	4.569	1	188670	+		31593	25765	21827	21868	36229	36229					0.14867077881399382
KIWHNEHYLH	10	Unmodified	_KIWHNEHYLH_					0	0	0			REV__ENST00000527754.1_1_11:129698120-129727360:+|nuORF	REV__ENST00000527754.1_1_11:129698120-129727360:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.2769775390625	3	459.566794	1375.67855	0.10905	5.0117E-05	-2.7687	-0.0012724	-2.6597	-0.0012223	459.5646489112237	20.415	0.14883	20.191	20.117	20.266	-0.22344					4	2	2	0	0	0	0.03519	1	522	522		11.097	0	1	7242.2	+		31594	24789	21828	21869	36230	36230					0.005741152688187867
KIWLTVLI	8	Unmodified	_KIWLTVLI_					0	0	0		ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3084411621094	2	493.325871	984.637189	-0.050849	-2.5085E-05	-4.338	-0.00214	-4.3888	-0.0021651	493.323535695998	68.637	0.53072	68.637	68.407	68.938	0					29	13	3	0	0	0	0.027866	1	8225	8225		38.806	5.9937	1	295160			31595	9181	21829	21870	36231	36231					0.14425586247421052
KIWLTVLI	8	Unmodified	_KIWLTVLI_					0	0	0		ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3085021972656	2	493.325871	984.637189	-0.023671	-1.1677E-05	-4.3063	-0.0021244	-4.3299	-0.0021361	493.3235517580135	68.727	0.52133	68.742	68.532	69.053	0.015129					21	13	2	0	0	0	0.027866	1	8150	8150		30.504	6.3009	1	348950			31596	9181	21829	21870	36232	36232					0.14425586247421052
KIWRTPNG	8	Unmodified	_KIWRTPNG_					0	0	0		nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB;IQUB|p.I493Sfs*15|1|0.2|ENSG00000164675|chr7:123469318-123469318|T/-|frameshift_variant	nc|ENSG00000164675|Q8NA54-2|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2886962890625	2	486.274701	970.534849	-0.26269	-0.00012774	-0.86317	-0.00041974	-1.1259	-0.00054748	486.27436119096507	65.217	0.44343	64.966	64.705	65.148	-0.25112					13	10	2	0	0	0	0.027866	1	7435	7435		18.324	0	1	77651			31597	7306	21830	21871	36233	36233					0.048403132284988715
KIYAIPIEI	9	Unmodified	_KIYAIPIEI_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.32666015625	2	530.326068	1058.63758	0.69955	0.00037099	-1.1942	-0.00063332	-0.49465	-0.00026233	530.325370919636	74.511	1.0211	74.511	74.172	75.194	0					54	24	3	0	0	0	0.29158	1	9121	9121		76.774	7.9873	1	1299900			31598	6538	21831	21872	36234	36234					0.11060961176622186
KIYAIPIEI	9	Unmodified	_KIYAIPIEI_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.3270874023438	2	530.326068	1058.63758	-0.058288	-3.0912E-05	0.19546	0.00010366	0.13717	7.2746E-05	530.3258455966663	74.736	0.97595	74.477	74.201	75.177	-0.25887					62	23	4	0	0	0	0.27161	1	9121	9121		79.451	2.6769	1	1442300			31599	6538	21831	21872	36235	36235					0.11060961176622186
KIYAIPIEI	9	Unmodified	_KIYAIPIEI_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.326068	1058.63758	-0.13029	-6.9094E-05	-8.1216	-0.0043071	-8.2519	-0.0043762	530.3204220196764	74.427	0.13269	74.163	74.098	74.231	-0.26326	-0.22051	-0.0059658	NaN	79.451	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44687			31600	6538	21831	21872							0.11060961176622186
KIYAVYIF	8	Unmodified	_KIYAVYIF_					0	0	0			REV__nc|ENSG00000197586|O75354-2|ENTPD6	REV__nc|ENSG00000197586|O75354-2|ENTPD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2358093261719	2	508.794404	1015.57425	-0.38512	-0.00019595	3.0241	0.0015386	2.639	0.0013427	508.79584612372804	31.636	0.76218	31.648	31.382	32.144	0.011799					49	18	4	0	0	0	0.027866	1	2075	2075		46.766	19.97	1	1020000	+		31601	28323	21832	21873	36236	36236					0.06709020459379644
KIYEAQPEI	9	Unmodified	_KIYEAQPEI_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.7920532226562	2	545.792589	1089.57063	-0.68658	-0.00037473	-0.22426	-0.0001224	-0.91084	-0.00049713	545.7923499581326	47.18	0.79329	47.18	46.892	47.685	0					52	22	3	0	0	0	0.034407	2	4714	4714;4726		138.06	19.319	1	3923000			31602	5547	21833	21874	36237;36238	36237					0.029423058948623293
KIYEAQPEI	9	Unmodified	_KIYEAQPEI_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.7926025390625	2	545.792589	1089.57063	-0.21682	-0.00011834	-0.67075	-0.00036609	-0.88757	-0.00048443	545.7920913081055	47.343	0.82441	47.19	46.94	47.764	-0.15301					56	23	3	0	0	0	0.034407	3	4715	4715;4725;4739		138.06	36.462	1	3964600			31603	5547	21833	21874	36239;36240;36241	36239					0.029423058948623293
KIYEAQPEI	9	Unmodified	_KIYEAQPEI_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.7920532226562	2	545.792589	1089.57063	-1.4006	-0.00076444	0.23914	0.00013052	-1.1615	-0.00063392	545.7927022512002	47.134	0.90457	47.193	46.803	47.708	0.059097					56	25	3	0	0	0	0.056725	2	4646	4646;4663		126.24	30.499	1	4320800			31604	5547	21833	21874	36242;36243	36242					0.029423058948623293
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7848510742188	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.445	1	45.445	44.945	45.945	0								0	0	0	0.023134	1	4419	4419		126.24	24.642	1				31605	3922	21834	21875	36244	36244					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7846069335938	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.503	1	45.503	45.003	46.003	0								0	0	0	0.036569	1	4429	4429		114.89	24.525	1				31606	3922	21834	21875	36245	36245					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7843627929688	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.571	1	45.571	45.071	46.071	0								0	0	0	0.015206	1	4441	4441		138.06	12.248	1				31607	3922	21834	21875	36246	36246					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7843017578125	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.637	1	45.637	45.137	46.137	0								0	0	0	0.21417	1	4453	4453		74.165	9.9577	1				31608	3922	21834	21875	36247	36247					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7854614257812	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.704	1	45.704	45.204	46.204	0								0	0	0	0.015206	1	4465	4465		138.06	36.462	1				31609	3922	21834	21875	36248	36248					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7864379882812	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.774	1	45.774	45.274	46.274	0								0	0	0	0.061376	1	4477	4477		104.01	21.773	1				31610	3922	21834	21875	36249	36249					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7826538085938	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.84	1	45.84	45.34	46.34	0								0	0	0	0.094727	1	4489	4489		93.598	8.6821	1				31611	3922	21834	21875	36250	36250					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7860107421875	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.975	1	45.975	45.475	46.475	0								0	0	0	0.036569	1	4513	4513		114.89	13.294	1				31612	3922	21834	21875	36251	36251					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7855834960938	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.045	1	46.045	45.545	46.545	0								0	0	0	0.023134	1	4525	4525		126.24	24.642	1				31613	3922	21834	21875	36252	36252					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.784912109375	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.115	1	46.115	45.615	46.615	0								0	0	0	0.094727	1	4537	4537		93.598	2.9967	1				31614	3922	21834	21875	36253	36253					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7854614257812	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.189	1	46.189	45.689	46.689	0								0	0	0	0.015206	1	4549	4549		138.06	20.251	1				31615	3922	21834	21875	36254	36254					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7849731445312	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.739	1	46.739	46.239	47.239	0								0	0	0	0.061376	1	4642	4642		104.01	7.98	1				31616	3922	21834	21875	36255	36255					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MSMS	OPSCC_39_ClassI_Rep-1	1	532.7848510742188	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.852	1	46.852	46.352	47.352	0								0	0	0	0.1192	1	4659	4659		88.177	17.361	1				31617	3922	21834	21875	36256	36256					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7842407226562	2	532.784764	1063.55498	-1.0541	-0.00056163	0.12255	6.5291E-05	-0.9316	-0.00049634	532.7855429724899	45.748	3.1551	45.596	45.244	48.399	-0.15157					218	90	6	0	0	0	0.056725	12	4429	4419;4429;4441;4453;4465;4477;4496;4508;4520;4532;4543;4643		126.24	26.636	1	381720000			31618	3922	21834	21875	36257;36258;36259;36260;36261;36262;36263;36264;36265;36266;36267;36268	36258					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.791748046875	2	532.784764	1063.55498	-0.1673	-8.9137E-05	1.7253	0.00091922	1.558	0.00083008	532.7862947806292	45.747	1.3871	45.65	45.051	46.438	-0.096649					108	38	5	0	0	0	0.10464	1	4344	4344		109.48	8.0185	1	33705000			31619	3922	21834	21875	36269	36269					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.7864990234375	2	532.784764	1063.55498	-0.65314	-0.00034798	2.1392	0.0011397	1.4861	0.00079175	532.7864694159816	45.949	1.2196	45.688	45.35	46.569	-0.26118					107	32	5	0	0	0	0.12933	2	4362	4362;4371		104.01	16.28	1	31609000			31620	3922	21834	21875	36270;36271	36270					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7857055664062	2	532.784764	1063.55498	-1.0654	-0.00056761	2.3356	0.0012443	1.2702	0.00067673	532.786550402359	45.818	1.0487	45.615	45.358	46.406	-0.20226					100	28	5	0	0	0	0.12933	1	4350	4350		104.01	7.98	1	29683000			31621	3922	21834	21875	36272	36272					0.025740193778119647
KIYFASQQKVE	11	Unmodified	_KIYFASQQKVE_					0	0	0		ENST00000230449.8_1_6:486202-486451:-|nuORF	ENST00000230449.8_1_6:486202-486451:-|nuORF	ENST00000230449.8_1_6:486202-486451:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	446.7493896484375	3	447.578477	1339.7136	-0.30097	-0.00013471	4.0709	0.0018221	3.77	0.0016874	447.58064311320436	31.03	0.20389	30.789	30.711	30.915	-0.24109					6	4	2	0	0	0	0.02477	1	2033	2033		12.433	0	1	29382			31622	11233	21835	21876	36273	36273					0.05733313286100383
KIYGPVFTL	9	Unmodified	_KIYGPVFTL_					0	0	0		ENSG00000165841|ENST00000371321|CYP2C19	ENSG00000165841|ENST00000371321|CYP2C19	ENSG00000165841|ENST00000371321|CYP2C19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2607421875	2	519.305136	1036.59572	0.082951	4.3077E-05	-4.0274	-0.0020914	-3.9444	-0.0020484	519.3027482697685	39.64	0.4226	39.41	39.2	39.623	-0.23021					15	10	2	0	0	0	0.024539	1	3378	3378		27.882	4.8398	1	108090			31623	7476	21836	21877	36274	36274					0.07888405488097305
KIYGPVFTL	9	Unmodified	_KIYGPVFTL_					0	0	0		ENSG00000165841|ENST00000371321|CYP2C19	ENSG00000165841|ENST00000371321|CYP2C19	ENSG00000165841|ENST00000371321|CYP2C19	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.305136	1036.59572	-0.56793	-0.00029493	-2.3781	-0.001235	-2.9461	-0.0015299	519.303301742835	39.525	0.56686	39.361	38.971	39.538	-0.16458	-0.04841	0.0013555	NaN	32.812	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192900			31624	7476	21836	21877							0.07888405488097305
KIYGPVFTL	9	Unmodified	_KIYGPVFTL_					0	0	0		ENSG00000165841|ENST00000371321|CYP2C19	ENSG00000165841|ENST00000371321|CYP2C19	ENSG00000165841|ENST00000371321|CYP2C19	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.305136	1036.59572	-0.1883	-9.7785E-05	-3.9812	-0.0020675	-4.1695	-0.0021652	519.30285006224	39.679	0.28064	39.456	39.302	39.583	-0.22311	0.04735	-0.00030952	NaN	32.812	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115520			31625	7476	21836	21877							0.07888405488097305
KIYPGHGRRY	10	Unmodified	_KIYPGHGRRY_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.2316589355469	3	416.231634	1245.67307	0.055213	2.2981E-05	-0.243	-0.00010114	-0.18779	-7.8163E-05	416.2315842412846	20.954	2.1418	20.777	20.336	22.478	-0.17721					111	44	6	0	0	0	0.98527	2	599	587;599		47.96	9.2454	1	3025500			31626	3360;14945	21837	21878	36275;36276	36276					0.06006436476991439
KIYPGHGRRY	10	Unmodified	_KIYPGHGRRY_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2314758300781	3	416.231634	1245.67307	-0.81461	-0.00033907	0.65491	0.00027259	-0.15971	-6.6475E-05	416.2319342734464	21.111	2.258	20.898	20.525	22.783	-0.2128					156	46	7	0	0	0	1.0447	1	591	591		40.058	2.55	1	3140900			31627	3360;14945	21837	21878	36277	36277					0.06006436476991439
KIYVVGGYSW	10	Unmodified	_KIYVVGGYSW_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.31103515625	2	586.310949	1170.60735	0.29413	0.00017245	-0.26337	-0.00015442	0.030756	1.8033E-05	586.3107442078465	67.566	0.62762	67.311	67.033	67.661	-0.25516					33	14	3	0	0	0	0.17599	1	7781	7781		124.08	25.498	1	916390			31628	731;10161	21838	21879	36278	36278					0.028866025114439253
KIYVVGGYSW	10	Unmodified	_KIYVVGGYSW_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.3115234375	2	586.310949	1170.60735	-0.87507	-0.00051306	0.77413	0.00045388	-0.10094	-5.918E-05	586.3113673411739	67.58	0.74577	67.346	66.97	67.716	-0.23376					38	17	3	0	0	0	0.14896	2	7783	7783;7793		127.46	61.032	1	797890			31629	731;10161	21838	21879	36279;36280	36279					0.028866025114439253
KIYVVGGYSW	10	Unmodified	_KIYVVGGYSW_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.3108520507812	2	586.310949	1170.60735	-0.81873	-0.00048003	0.62141	0.00036434	-0.19732	-0.00011569	586.3112633818308	67.574	0.91098	67.335	66.998	67.909	-0.23814					42	21	3	0	0	0	0.34774	1	7781	7781		104.06	54.521	1	824410			31630	731;10161	21838	21879	36281	36281					0.028866025114439253
KKADGKPN	8	Unmodified	_KKADGKPN_					0	0	0			REV__ENSG00000196639|ENST00000431010|HRH1	REV__ENSG00000196639|ENST00000431010|HRH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.78485107421875	2	429.245609	856.476666	0.10941	4.6963E-05	0.65269	0.00028016	0.76209	0.00032712	429.24583279292005	25.694	0.63218	25.523	25.205	25.837	-0.17078					31	15	3	0	0	0	0.027866	1	1257	1257		53.351	15.54	1	662640	+		31631	28208	21839	21880	36282	36282					0.04268631583227034
KKAFSVRAH	9	Unmodified	_KKAFSVRAH_					0	0	0		ENST00000440790.6_1_6:28134336-28135143:+|nuORF	ENST00000440790.6_1_6:28134336-28135143:+|nuORF	ENST00000440790.6_1_6:28134336-28135143:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2784423828125	2	522.309075	1042.6036	-1.1161	-0.00058296	-0.6588	-0.0003441	-1.7749	-0.00092706	522.3081358476392	39.046	0.43339	39.07	38.844	39.277	0.023727					23	11	3	0	0	0	0.024397	1	3263	3263		47.657	5.1829	1	359600			31632	14350	21840	21881	36283	36283					0.08399977528233649
KKAFWGTEKF	10	Unmodified	_KKAFWGTEKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.5595397949219	3	414.560758	1240.66044	-0.78615	-0.00032591	-2.7865	-0.0011552	-3.5727	-0.0014811	414.5595911842021	26.653	1.2873	26.417	26.098	27.385	-0.23603					82	31	4	0	0	0	0.99657	1	1422	1422		46.457	1.8173	1	5855800			31633	10426	21841	21882	36284	36284					0.0497398029406213
KKAFWGTEKF	10	Unmodified	_KKAFWGTEKF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.5598449707031	3	414.560758	1240.66044	-0.37487	-0.00015541	-3.0323	-0.0012571	-3.4072	-0.0014125	414.5594908845124	26.455	1.4893	26.286	25.87	27.359	-0.16816					94	37	4	0	0	0	0.98527	1	1397	1397		47.96	10.451	1	5548900			31634	10426	21841	21882	36285	36285					0.0497398029406213
KKAIRRATV	9	Unmodified	_KKAIRRATV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;ENST00000496458.1_1_2:198262707-198263303:-|nuORF	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3053588867188	2	521.845825	1041.6771	0.30652	0.00015996	-2.1448	-0.0011192	-1.8383	-0.00095928	521.8451696574301	47.224	0.46349	47.071	46.978	47.441	-0.15301					14	12	2	0	0	0	0.024457	1	4747	4747		37.159	19.794	1	218690			31635	3459	21842	21883	36286	36286					0.15792525970664428
KKALMEKL	8	Unmodified	_KKALMEKL_					0	0	0			REV__nc|ENSG00000137948|Q58F21-5|BRDT	REV__nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.80096435546875	2	480.799163	959.583773	-0.09375	-4.5075E-05	3.1194	0.0014998	3.0257	0.0014547	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	1.0239	1	11925	11925		33.516	1.5607	1	24672000	+		31636	23800	21843	21884	36287	36287					0.10236465473246881
KKALMEKL	8	Unmodified	_KKALMEKL_					0	0	0			REV__nc|ENSG00000137948|Q58F21-5|BRDT	REV__nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.8006286621094	2	480.799163	959.583773	-0.63881	-0.00030714	3.6818	0.0017702	3.043	0.0014631	480.80082202255966	94.22	2.2256	94.226	93.689	95.914	0.0059814					161	52	5	0	0	0	1.0239	1	11908	11908		33.516	3.674	1	22094000	+		31637	23800	21843	21884	36288	36288					0.10236465473246881
KKALMEKL	8	Unmodified	_KKALMEKL_					0	0	0			REV__nc|ENSG00000137948|Q58F21-5|BRDT	REV__nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.8007507324219	2	480.799163	959.583773	0.090455	4.3491E-05	3.0156	0.0014499	3.1061	0.0014934	480.8005013291242	94.353	2.0213	94.206	93.738	95.76	-0.14771					162	46	6	0	0	0	0.95679	1	11583	11583		44.117	6.9577	1	14863000	+		31638	23800	21843	21884	36289	36289					0.10236465473246881
KKARKELL	8	Unmodified	_KKARKELL_					0	0	0		ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	ENSG00000132613|ENST00000338779|MTSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.3293762207031	2	493.329476	984.6444	3.1556	0.0015568	-3.1182	-0.0015383	0.037481	1.849E-05	493.3278214110012	18.442	0.69865	18.199	17.974	18.673	-0.24256					33	13	5	0	0	0	0.94517	1	267	267		45.952	5.3793	1	693760			31639	4627	21844	21885	36290	36290					0.15146318847837392
KKARNRIK	8	Unmodified	_KKARNRIK_					0	0	0			REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7583312988281	2	507.338167	1012.66178	-0.92332	-0.00046843	3.173	0.0016098	2.2496	0.0011413	507.3395270528251	27.644	0.20728	27.476	27.402	27.61	-0.16816					6	4	2	0	0	0	0.027866	1	1553	1553		31.955	11.958	1	23500	+		31640	30220	21845	21886	36291	36291					0.1559565917349346
KKASPIRTLKT	11	Unmodified	_KKASPIRTLKT_					0	0	0			REV__ENSG00000162734|ENST00000360472|PEA15	REV__ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.9000244140625	2	621.898254	1241.78196	0.5184	0.00032239	3.7578	0.002337	4.2762	0.0026594	621.9003389778508	105.39	0.39869	105.23	105.09	105.48	-0.16484					24	10	3	0	0	0	1.0465	1	13123	13123		26.063	4.3776	1	1135300	+		31641	25482	21846	21887	36292	36292					0.17073602656591902
KKATTTVYIN	10	Unmodified	_KKATTTVYIN_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.2764892578125	2	569.826963	1137.63937	-1.2075	-0.00068805	4.3923	0.0025028	3.1848	0.0018148	569.8293633605006	79.918	1.5186	79.94	79.645	81.164	0.021446					82	36	4	0	0	0	0.03519	1	9925	9925		41.427	15.976	1	670690			31642	6235	21847	21888	36293	36293					0.07605970194572365
KKAVCPIEVYG	11	Unmodified	_KKAVCPIEVYG_					0	0	0			REV__nc|ENSG00000138621|Q96CD2-2|PPCDC	REV__nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.8395080566406	3	402.889886	1205.64783	-1.4888	-0.00059983	1.2559	0.00050599	-0.23291	-9.3835E-05	403.22476158972626	21.566	0.78238	21.353	20.773	21.555	-0.2128					19	15	2	0	0	0	0.024749	1	649	649		22.562	4.0305	1	79887	+		31643	23868	21848	21889	36294	36294					0.053232008395525554
KKCDYWIRTFV	11	Unmodified	_KKCDYWIRTFV_					0	0	0		ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF;DNM1-LCN2|1|fusion;nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2	ENST00000470902.5_1_9:130912815-130915395:+|nuORF	ENST00000470902.5_1_9:130912815-130915395:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2917785644531	3	486.92359	1457.74894	-0.46309	-0.00022549	0.23345	0.00011367	-0.22965	-0.00011182	487.2588800257694	81.851	0.19779	81.851	81.711	81.909	0					7	4	2	0	0	0	0.024879	1	10196	10196		12.957	9.7462	1	75789			31644	661	21849	21890	36295	36295					0.038376525421881524
KKCGQLQLQ	9	Unmodified	_KKCGQLQLQ_					0	0	0			REV__ENSG00000111536|ENST00000229134|IL26	REV__ENSG00000111536|ENST00000229134|IL26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2953491210938	2	523.294776	1044.575	0.32061	0.00016777	-0.24592	-0.00012869	0.074691	3.9085E-05	523.2947323964279	35.801	1.527	35.603	35.169	36.696	-0.19829					114	40	4	0	0	0	0.43973	1	2765	2765		63.306	3.0123	1	17849000	+		31645	21922	21850	21891	36296	36296					0.05449491836770903
KKCIQLFNKP	10	Unmodified	_KKCIQLFNKP_					0	0	0			REV__ENSG00000120162|ENST00000262244|MOB3B	REV__ENSG00000120162|ENST00000262244|MOB3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.5791015625	3	406.905759	1217.69545	0.21198	8.6255E-05	3.2464	0.001321	3.4584	0.0014072	406.90703200212124	34.553	0.6966	34.548	34.225	34.922	-0.0045624					31	17	2	0	0	0	0.03519	1	2537	2537		20.03	0	1	551500	+		31646	22516	21851	21892	36297	36297					0.09530899830360795
KKCLETLAI	9	Unmodified	_KKCLETLAI_					0	0	0		nc|ENSG00000180448|Q92619-2|ARHGAP45;ENSG00000180448|ENST00000313093|ARHGAP45;ENST00000587602.5_1_19:1073185-1086002:+|nuORF	nc|ENSG00000180448|Q92619-2|ARHGAP45	nc|ENSG00000180448|Q92619-2|ARHGAP45	MSMS	OPSCC_39_ClassI_Rep-2	2	509.8032531738281	2	509.801903	1017.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.27	1	83.18	82.68	83.68	-0.090454								0	0	0	0.5792	1	10374	10374		42.396	5.3677	1				31647	8979	21852	21893	36298	36298					0.08116144265045477
KKCLETLAI	9	Unmodified	_KKCLETLAI_					0	0	0		nc|ENSG00000180448|Q92619-2|ARHGAP45;ENSG00000180448|ENST00000313093|ARHGAP45;ENST00000587602.5_1_19:1073185-1086002:+|nuORF	nc|ENSG00000180448|Q92619-2|ARHGAP45	nc|ENSG00000180448|Q92619-2|ARHGAP45	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8035583496094	2	509.801903	1017.58925	0.56391	0.00028748	2.8432	0.0014495	3.4071	0.0017369	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.85329	1	10518	10518		35.618	4.0394	1	3699900			31648	8979	21852	21893	36299	36299					0.08116144265045477
KKCTLDQAF	9	Unmodified	_KKCTLDQAF_					0	0	0		nc|ENSG00000079134|Q96FV9-2|THOC1;ENSG00000079134|ENST00000261600|THOC1;ENST00000580544.1_1_18:265281-265389:-|nuORF;ENST00000582313.5_1_18:245829-268019:-|nuORF	nc|ENSG00000079134|Q96FV9-2|THOC1	nc|ENSG00000079134|Q96FV9-2|THOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.2727661132812	2	527.273509	1052.53247	0.54691	0.00028837	-0.38753	-0.00020433	0.15938	8.4038E-05	527.2732608139892	58.526	1.6154	58.617	58.297	59.912	0.091217					77	43	2	0	0	0	0.56934	1	6570	6570		54.776	0	1	3518600			31649	1652	21853	21894	36300	36300					0.008300967085460798
KKDAKKITF	9	Unmodified	_KKDAKKITF_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7694091796875	2	539.834591	1077.65463	-0.49765	-0.00026865	-2.2429	-0.0012108	-2.7405	-0.0014794	539.8332634467912	18.899	0.44204	18.767	18.597	19.039	-0.13147					21	8	3	0	0	0	0.024541	1	362	362		16.473	0	1	148330			31650	9189	21854	21895	36301	36301					0.11890881782414908
KKDAKKITF	9	Unmodified	_KKDAKKITF_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.834591	1077.65463	1.4499	0.00078273	-4.2845	-0.0023129	-2.8345	-0.0015302	539.8321271900505	18.744	0.44279	18.744	18.529	18.972	0	-0.11737	-0.00084418	NaN	20.947	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183570			31651	9189	21854	21895							0.11890881782414908
KKDAKKITF	9	Unmodified	_KKDAKKITF_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	539.834591	1077.65463	1.1238	0.00060665	-3.9897	-0.0021538	-2.866	-0.0015472	539.8323394916868	19.137	0.59357	18.903	18.682	19.275	-0.23345	0.041703	-0.000526	NaN	20.947	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303730			31652	9189	21854	21895							0.11890881782414908
KKDCEAYALQ	10	Unmodified	_KKDCEAYALQ_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.803955078125	2	584.786981	1167.55941	-0.83418	-0.00048781	-1.6364	-0.00095694	-2.4706	-0.0014448	584.7863139019607	53.582	0.28689	53.445	53.244	53.531	-0.13617					9	7	2	0	0	0	0.03519	1	5638	5638		34.173	5.023	1	3292200			31653	1058	21855	21896	36302	36302					-0.017668394709517088
KKDDKKKDV	9	Unmodified	_KKDDKKKDV_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.3246459960938	2	552.324588	1102.63462	-0.077194	-4.2636E-05	-0.17849	-9.8583E-05	-0.25568	-0.00014122	552.3244866283704	20.034	0.62701	19.867	19.669	20.296	-0.16774					40	12	5	0	0	0	0.19099	1	504	504		90.37	5.209	1	1312500			31654	9189	21856	21897	36303	36303					0.08741086051782077
KKDDKKKDV	9	Unmodified	_KKDDKKKDV_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.3243408203125	2	552.324588	1102.63462	0.33559	0.00018536	-0.65591	-0.00036228	-0.32032	-0.00017692	552.3241848391576	20.126	0.73473	19.903	19.68	20.415	-0.22344					42	14	4	0	0	0	0.26966	1	478	478		79.713	5.4575	1	1181800			31655	9189	21856	21897	36304	36304					0.08741086051782077
KKDEGSGT	8	Unmodified	_KKDEGSGT_					0	0	0		ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	ENSG00000165120|ENST00000297819|SSMEM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.56304931640625	2	411.203607	820.392661	0.081697	3.3594E-05	2.3889	0.00098234	2.4706	0.0010159	411.205921343989	32.515	0.12558	32.278	32.173	32.299	-0.23666					4	2	2	0	0	0	0.027866	1	2232	2232		3.6843	0	1	45388			31656	7367	21857	21898	36305	36305					-0.02471944304329554
KKDIKSITSN	10	Unmodified	_KKDIKSITSN_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.32958984375	2	567.32987	1132.64519	-1.2298	-0.00069771	0.82385	0.00046739	-0.40596	-0.00023031	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.1266	1	11185	11185		29.17	0	1	17705000			31657	18628	21858	21899	36306	36306					0.08417068706239661
KKDIRDYN	8	Unmodified	_KKDIRDYN_					0	0	0		ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD	ENSG00000117899|ENST00000261758|MESD	ENSG00000117899|ENST00000261758|MESD	MSMS	OPSCC_40_ClassI_Rep-1	4	526.2808227539062	2	526.28018	1050.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.95	1	111.82	111.32	112.32	-0.12724								0	0	0	1.2188	1	13673	13673		10.265	0.080485	1				31658	3663	21859	21900	36307	36307					0.022556708121328484
KKDKHSKKAKK	11	Unmodified	_KKDKHSKKAKK_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.61822509765625	3	442.617377	1324.8303	-0.25807	-0.00011423	0.4164	0.00018431	0.15833	7.0081E-05	442.6174356611323	17.022	0.59535	16.814	16.569	17.165	-0.20777					27	11	4	0	0	0	1.0621	1	123	123		21.78	0.74819	1	225640			31659	6270	21860	21901	36308	36308					0.1808809629649204
KKDKKEQLSK	10	Unmodified	_KKDKKEQLSK_					0	0	0		nc|ENSG00000182552|Q6NW29-2|RWDD4;ENST00000426392.1_1_7:39894095-39894470:-|nuORF;ENSG00000182552|ENST00000326397|RWDD4	nc|ENSG00000182552|Q6NW29-2|RWDD4	nc|ENSG00000182552|Q6NW29-2|RWDD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.7139587402344	3	411.250472	1230.72959	-0.17948	-7.3811E-05	1.0678	0.00043914	0.88834	0.00036533	411.25077037907874	27.822	0.55771	27.67	27.482	28.04	-0.15195					20	13	2	0	0	0	0.03519	1	1566	1566		11.932	4.1279	1	178100			31660	9144	21861	21902	36309	36309					0.12345019522990697
KKDKKKNA	8	Unmodified	_KKDKKKNA_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.3033142089844	2	480.303458	958.592364	3.8992	0.0018728	-3.9672	-0.0019055	-0.067997	-3.2659E-05	480.3014075401704	18.475	0.58937	18.539	18.353	18.942	0.063307					20	11	2	0	0	0	1.0574	1	271	271		17.365	2.7009	1	171730	+		31661	25909	21862	21903	36310	36310					0.1114115543407479
KKDLDEFI	8	Unmodified	_KKDLDEFI_					0	0	0			REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.274169921875	2	504.274032	1006.53351	-0.44577	-0.00022479	0.56079	0.00028279	0.11502	5.8004E-05	504.27418882743484	27.092	1.1921	26.85	26.529	27.721	-0.24217					98	27	5	0	0	0	0.68535	1	1468	1468		68.485	2.0554	1	7066200	+		31662	23671	21863	21904	36311	36311					0.030506343490856125
KKDRRLCCVYR	11	Carbamidomethyl (C)	_KKDRRLCC(Carbamidomethyl (C))VYR_	KKDRRLC(0.084)C(0.916)VYR		KKDRRLC(-10)C(10)VYR		0	1	0			REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	REV__ENST00000378161.5_1_1:5926431-5928130:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.6050720214844	3	499.602745	1495.78641	-0.88856	-0.00044393	4.3231	0.0021598	3.4345	0.0017159	499.6048718582065	56.239	0.81125	56.024	55.78	56.591	-0.21551					49	20	3	0	0	0	0.9703	1	6083	6083		43.419	16.669	2	3672300	+		31663	31394	21864	21905	36312	36312	414				0.058344205361891
KKDSTAAS	8	Unmodified	_KKDSTAAS_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.23284912109375	2	404.213975	806.413397	1.0873	0.00043949	-0.31394	-0.0001269	0.77333	0.00031259	404.21281260175255	84.358	0.50224	84.358	84.084	84.587	0					17	11	2	0	0	0	0.027866	1	10574	10574		15.642	0	1	84178			31664	3824	21865	21906	36313	36313					0.002446460753390056
KKDYALSKSV	10	Unmodified	_KKDYALSKSV_					0	0	0			REV__nc|ENSG00000144118|P11234-3|RALB	REV__nc|ENSG00000144118|P11234-3|RALB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.2772827148438	2	569.826963	1137.63937	-1.057	-0.00060232	4.2728	0.0024348	3.2158	0.0018325	569.8292875266964	79.959	1.5684	79.959	79.489	81.057	0					82	37	4	0	0	0	0.03519	1	9960	9960		51.193	10.415	1	699940	+		31665	36743	21866	21907	36314	36314					0.0760597019452689
KKEAKKYE	8	Unmodified	_KKEAKKYE_					0	0	0			REV__ENSG00000106066|ENST00000265394|CPVL	REV__ENSG00000106066|ENST00000265394|CPVL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2855224609375	2	512.295299	1022.57605	-0.18392	-9.4219E-05	4.4434	0.0022763	4.2595	0.0021821	512.297545124913	61.976	0.63766	61.762	61.375	62.012	-0.21375					28	15	3	0	0	0	0.027866	1	6967	6967		20.947	0	1	197540	+		31666	21592	21867	21908	36315	36315					0.06566029477323809
KKEAPNCDMC	10	Unmodified	_KKEAPNCDMC_					0	0	0			REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7354736328125	2	569.738119	1137.46169	-0.048745	-2.7772E-05	-3.9608	-0.0022566	-4.0096	-0.0022844	569.7357885126426	40.196	1.1095	39.971	39.223	40.332	-0.225					53	28	3	0	0	0	0.91678	1	3454	3454		52.937	5.0211	1	4096900	+		31667	26867	21868	21909	36316	36316					-0.10154687662929973
KKEAPNCDMC	10	Unmodified	_KKEAPNCDMC_					0	0	0			REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	REV__nc|ENSG00000174473|Q49A17-2|GALNTL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7357788085938	2	569.738119	1137.46169	-0.65141	-0.00037113	-3.4798	-0.0019826	-4.1312	-0.0023537	569.7360559693147	40.172	1.179	39.942	39.164	40.343	-0.23021					59	30	3	0	0	0	1.0508	1	3436	3436		39.253	2.0937	1	3066400	+		31668	26867	21868	21909	36317	36317					-0.10154687662929973
KKEEIKEVP	9	Unmodified	_KKEEIKEVP_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.311767578125	2	550.321514	1098.62847	-0.060579	-3.3338E-05	1.5004	0.0008257	1.4398	0.00079236	550.322063071224	32.125	0.56192	31.888	31.654	32.216	-0.23667					26	12	3	0	0	0	0.024466	1	2201	2201		31.53	0	1	293010			31669	1175;38049	21869	21910	36318	36318					0.08310567820262804
KKEFKKGAE	9	Unmodified	_KKEFKKGAE_					0	0	0			REV__ENST00000473527.5_1_7:100883089-100895220:-|nuORF	REV__ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.8082275390625	2	532.808574	1063.60259	-0.79566	-0.00042393	0.62978	0.00033555	-0.16588	-8.8382E-05	532.8087685857755	20.763	0.49641	20.539	20.365	20.861	-0.22344					24	9	3	0	0	0	0.53979	1	570	570		56.721	1.9447	1	290550	+		31670	33239	21870	21911	36319	36319					0.07333718368658992
KKEHIIVI	8	Unmodified	_KKEHIIVI_					0	0	0			REV__ENST00000472260.1_1_2:169713171-169721477:+|nuORF	REV__ENST00000472260.1_1_2:169713171-169721477:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.8026428222656	2	490.318577	978.622602	-0.07337	-3.5975E-05	-0.33229	-0.00016293	-0.40566	-0.0001989	490.3182225872423	25.223	0.46604	25.052	24.781	25.247	-0.17078					25	10	3	0	0	0	0.027866	1	1156	1156		30.504	1.3541	1	384730	+		31671	25529	21871	21912	36320	36320					0.13243514099281128
KKEIQKKMDKK	11	Unmodified	_KKEIQKKMDKK_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.618896484375	3	468.618278	1402.83301	-0.062636	-2.9352E-05	-1.5169	-0.00071084	-1.5795	-0.00074019	468.6176427321409	16.729	0.34482	16.521	16.367	16.712	-0.20777					18	8	3	0	0	0	1.1092	1	92	92		8.7993	0.39205	1	26880			31672	1295	21872	21913	36321	36321					0.1477018363912066
KKEKDSLPV	9	Unmodified	_KKEKDSLPV_					0	0	0			REV__nc|ENSG00000182287|P56377|AP1S2	REV__nc|ENSG00000182287|P56377|AP1S2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2803955078125	2	522.308406	1042.60226	-0.65835	-0.00034386	0.067556	3.5285E-05	-0.59079	-0.00030857	522.3077973275484	38.823	0.39966	38.725	38.514	38.914	-0.098751					22	10	3	0	0	0	0.024397	1	3239	3239		47.657	1.6851	1	302130	+		31673	27466	21873	21914	36322	36322					0.0826629864880033
KKEKINIR	8	Unmodified	_KKEKINIR_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.832275390625	2	514.832383	1027.65021	0.89948	0.00046308	-0.94476	-0.00048639	-0.045284	-2.3314E-05	514.83173416295	18.016	0.8416	17.859	17.405	18.247	-0.15637					35	16	4	0	0	0	0.87148	1	257	257		53.351	0	1	328940			31674	7172	21874	21915	36323	36323					0.1374941735948596
KKEKLMKLA	9	Unmodified	_KKEKLMKLA_					0	0	0		nc|ENSG00000125571|Q9NZH6-5|IL37;nc|ENSG00000125571|Q9NZH6-3|IL37;nc|ENSG00000125571|Q9NZH6-2|IL37;nc|ENSG00000125571|Q9NZH6-4|IL37;ENSG00000125571|ENST00000263326|IL37	nc|ENSG00000125571|Q9NZH6-5|IL37	nc|ENSG00000125571|Q9NZH6-5|IL37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8037719726562	2	544.846645	1087.67874	-1.2753	-0.00069482	0.7661	0.00041741	-0.50915	-0.00027741	544.8470462398426	21.872	0.43454	21.666	21.417	21.851	-0.20594					14	8	2	0	0	0	0.024541	1	696	696		10.265	0	1	51832			31675	4119	21875	21916	36324	36324					0.13840398944444132
KKEKVKAGP	9	Unmodified	_KKEKVKAGP_					0	0	0		nc|ENSG00000043143|Q9NQC1-3|JADE2;ENSG00000043143|ENST00000681547|JADE2	nc|ENSG00000043143|Q9NQC1-3|JADE2	nc|ENSG00000043143|Q9NQC1-3|JADE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.8013916015625	2	492.813659	983.612765	-1.1398	-0.0005617	2.4339	0.0011994	1.2941	0.00063774	492.8147282827388	36.02	0.17067	35.978	35.931	36.101	-0.042454					8	4	3	0	0	0	0.024412	1	2827	2827		17.365	0.89182	1	159910			31676	1086	21876	21917	36325	36325					0.12030326093895383
KKELELPVP	9	Unmodified	_KKELELPVP_					0	0	0			REV__ENSG00000204616|ENST00000376734|TRIM31	REV__ENSG00000204616|ENST00000376734|TRIM31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.3050537109375	2	526.82115	1051.62775	1.0021	0.00052791	-1.3371	-0.00070441	-0.33504	-0.0001765	526.8203704092292	98.52	0.63805	98.395	98.111	98.749	-0.12413					26	14	3	0	0	0	0.024541	1	12174	12174		24.203	0	1	158400	+		31677	28625	21877	21918	36326	36326					0.10399773171229754
KKELKKKAK	9	Unmodified	_KKELKKKAK_					0	0	0			REV__ENSG00000182329|ENST00000498697|KIAA2012	REV__ENSG00000182329|ENST00000498697|KIAA2012	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.8131713867188	2	550.879333	1099.74411	-1.4412	-0.00079392	-3.7522	-0.002067	-5.1934	-0.002861	550.8783322203969	38.088	0.26728	38.006	37.848	38.116	-0.082512					12	7	2	0	0	0	0.024541	1	3139	3139		10.866	1.1599	1	94986	+		31678	27470	21878	21919	36327	36327					0.19823136461786817
KKEMVMQY	8	Unmodified	_KKEMVMQY_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3255615234375	2	528.764463	1055.51437	-0.95657	-0.0005058	0.34091	0.00018026	-0.61566	-0.00032554	528.7646006653674	28.352	0.28759	28.183	27.966	28.254	-0.16897					10	6	2	0	0	0	0.027866	1	1633	1633		19.36	3.7182	1	43727			31679	5364	21879	21920	36328	36328					-0.01116361537810917
KKEPAAPPKV	10	Unmodified	_KKEPAAPPKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.8087158203125	2	532.826766	1063.63898	-0.67751	-0.00036099	-2.129	-0.0011344	-2.8065	-0.0014954	532.8261903801233	46.021	0.44917	45.76	45.557	46.006	-0.26118					25	11	3	0	0	0	0.03519	1	4431	4431		82.241	28.889	1	864340			31680	6479	21880	21921	36329	36329					0.1097059526537123
KKEPRYWL	8	Unmodified	_KKEPRYWL_					0	0	0		nc|ENSG00000196932|Q6ZUK4-2|TMEM26;ENSG00000196932|ENST00000399298|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26;ENSG00000196932|ENST00000399298|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3165283203125	2	560.319109	1118.62366	-0.16113	-9.0283E-05	-3.9947	-0.0022383	-4.1559	-0.0023286	560.3168165599787	47.539	0.89421	47.352	46.93	47.825	-0.18684					64	23	4	0	0	0	0.93274	1	4637	4637		47.916	3.7988	1	5464100			31681	18632;9936	21881	21922	36330	36330					0.06909728468190224
KKEQKLST	8	Unmodified	_KKEQKLST_					0	0	0		ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.3031921386719	2	481.287474	960.560395	0.2044	9.8375E-05	-1.3491	-0.00064929	-1.1447	-0.00055092	481.2866224222848	18.753	0.48959	18.621	18.401	18.891	-0.13147					17	9	3	0	0	0	0.027866	1	298	298		24.203	0	1	103490			31682	6104	21882	21923	36331	36331					0.07853742960276122
KKERHNTILI	10	Unmodified	_KKERHNTILI_					0	0	0			REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	626.3795776367188	2	626.380229	1250.7459	0.14483	9.0718E-05	-1.1743	-0.00073555	-1.0295	-0.00064483	626.3793744637064	104.44	1.1159	104.31	103.92	105.03	-0.12561					95	32	5	0	0	0	1.0814	1	12979	12979		23.523	0	1	2513500	+		31683	31322	21883	21924	36332	36332					0.13056145479754377
KKERIVKA	8	Unmodified	_KKERIVKA_					0	0	0			REV__ENST00000485075.1_1_15:78562865-78566840:+|nuORF	REV__ENST00000485075.1_1_15:78562865-78566840:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.29217529296875	2	486.321651	970.62875	0.19013	9.2466E-05	0.16	7.7813E-05	0.35014	0.00017028	486.3201598500765	81.89	0.51009	81.697	81.505	82.015	-0.19334					16	11	2	0	0	0	0.027866	1	9904	9904		49.442	7.0454	1	129280	+		31684	24014	21884	21925	36333	36333					0.14226032330793714
KKERLIKRGN	10	Unmodified	_KKERLIKRGN_					0	0	0			REV__ENST00000399417.3_1_X:106595227-106595875:-|nuORF	REV__ENST00000399417.3_1_X:106595227-106595875:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.3936157226562	2	621.39367	1240.77279	-0.41964	-0.00026076	-0.53915	-0.00033503	-0.95879	-0.00059579	621.3932598253778	103.38	0.6693	103.38	103.14	103.81	-0.0046005					42	15	4	0	0	0	1.1329	1	13202	13202		27.882	4.3595	1	723940	+		31685	31829	21885	21926	36334	36334					0.1620325409094221
KKERQYHS	8	Unmodified	_KKERQYHS_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7932739257812	2	538.285797	1074.55704	-0.43435	-0.0002338	3.5319	0.0019011	3.0975	0.0016673	538.2876213205053	24.992	0.54272	25.07	24.914	25.457	0.078344					21	12	3	0	0	0	0.027866	1	1074	1074		35.618	0	1	184280	+		31686	21246	21886	21927	36335	36335					0.022744929062810115
KKEVKSKAAS	10	Unmodified	_KKEVKSKAAS_					0	0	0			REV__ENST00000414863.2_1_X:97506861-97507095:+|nuORF	REV__ENST00000414863.2_1_X:97506861-97507095:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3262939453125	2	538.327131	1074.63971	0.30756	0.00016557	-0.34471	-0.00018557	-0.037144	-1.9996E-05	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	1.118	1	12447	12447		30.318	1.1682	1	21168000	+		31687	20834	21887	21928	36336	36336					0.10537389914406958
KKEWLRSP	8	Unmodified	_KKEWLRSP_					0	0	0		ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	ENSG00000007080|ENST00000445755|CCDC124	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2803955078125	2	522.303458	1042.59236	-1.6971	-0.00088643	-2.5888	-0.0013522	-4.286	-0.0022386	522.3020499829631	38.486	0.58792	38.513	38.298	38.886	0.027275					36	15	3	0	0	0	0.027866	1	3226	3226		42.396	5.237	1	1532500			31688	807	21888	21929	36337	36337					0.07277155434076121
KKFCKTYIED	10	Unmodified	_KKFCKTYIED_					0	0	0		ENST00000561131.2_1_15:71341123-71341948:+|nuORF;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49	ENST00000561131.2_1_15:71341123-71341948:+|nuORF	ENST00000561131.2_1_15:71341123-71341948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.25628662109375	3	425.553163	1273.63766	-1.1047	-0.00047009	2.6211	0.0011154	1.5164	0.00064531	425.55419925519766	35.473	0.34159	35.473	35.306	35.647	0					12	8	2	0	0	0	0.03519	1	2744	2744		27.047	0	1	77190			31689	5162	21889	21930	36338	36338					0.011785931142640038
KKFGVVLINPK	11	Unmodified	_KKFGVVLINPK_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.899658203125	2	621.900266	1241.78598	-0.5035	-0.00031313	2.0217	0.0012573	1.5182	0.00094415	621.9012393385995	106.03	0.34787	106.03	105.83	106.18	0.00014496					28	12	3	0	0	0	1.0718	1	13527	13527		19.104	0.84144	1	559380	+		31690	20440	21890	21931	36339	36339					0.1747569215031035
KKFKPVIR	8	Unmodified	_KKFKPVIR_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-5|DGKH	REV__nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	2	508.342387	1014.67022	-0.59125	-0.00030056	1.4416	0.00073281	0.85031	0.00043225	508.34336743668547	26.182	0.28221	26.182	26.001	26.283	0					12	6	3	0	0	0	0.027866	1	1295	1295		33.516	15.191	1	149760	+		31691	21325	21891	21932	36340	36340					0.16347213090136847
KKFKRRADY	9	Unmodified	_KKFKRRADY_					0	0	0			REV__ENSG00000071909|ENST00000408978|MYO3B	REV__ENSG00000071909|ENST00000408978|MYO3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	606.3145141601562	2	606.354014	1210.69348	-0.16761	-0.00010163	2.4202	0.0014675	2.2525	0.0013658	606.3555712103182	78.561	0.30233	78.405	78.212	78.514	-0.15591					10	6	2	0	0	0	0.024528	1	9358	9358		26.693	0	1	36259	+		31692	20456	21892	21933	36341	36341					0.09655607136801336
KKFQDVKE	8	Unmodified	_KKFQDVKE_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.80291748046875	2	511.287474	1020.5604	0.32477	0.00016605	-4.3703	-0.0022345	-4.0455	-0.0020684	511.28480412018337	18.982	0.49377	18.778	18.51	19.004	-0.20371					11	6	2	0	0	0	0.027866	1	341	341		44.117	12.162	1	44786	+		31693	25067	21893	21934	36342	36342					0.05093742960286818
KKFRKMFYV	9	Unmodified	_KKFRKMFYV_					0	0	0		ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2314758300781	3	416.242483	1245.70562	-0.63201	-0.00026307	3.2793	0.001365	2.6473	0.0011019	416.24349999173484	20.992	0.19857	20.78	20.673	20.872	-0.2128					5	3	2	0	0	0	0.024541	1	591	591		14.137	0	1	12017			31694	4928	21894	21935	36343	36343					0.09259507555634627
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	631.84326171875	1	631.3522	630.344923	-0.54546	-0.00034438	3.3808	0.0021345	2.8354	0.0017901	631.3543303056593	78.394	0.786	78.41	77.863	78.649	0.015907					27	18	2	0	0	0	0.027866	1	9554	9554		0	0	1	167960			31695	10226	21895	21936	36344	36344					0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		1	631.3522	630.344923	1.1495	0.00072577	1.3145	0.00082989	2.464	0.0015557	631.3530339605267	78.528	0.69972	78.336	77.891	78.591	-0.1921	-0.14617	-0.00078776	NaN	0	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155330			31696	10226	21895	21936							0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		1	631.3522	630.344923	-0.59569	-0.00037609	3.0777	0.0019431	2.482	0.001567	631.354055108506	78.758	0.81842	78.503	77.869	78.687	-0.25471	0.020985	0.00032546	NaN	0	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285060			31697	10226	21895	21936							0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		1	631.3522	630.344923	-0.28892	-0.00018241	2.9591	0.0018682	2.6701	0.0016858	631.3540066968683	78.892	1.146	78.661	77.877	79.023	-0.23141	0.17853	0.00025055	NaN	0	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280490			31698	10226	21895	21936							0.014964462861485117
KKGAGGGG	8	Unmodified	_KKGAGGGG_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		1	631.3522	630.344923	-0.11412	-7.2053E-05	2.4294	0.0015338	2.3152	0.0014617	631.3537445568047	78.657	1.027	78.502	77.87	78.897	-0.15591	0.019303	-8.3879E-05	NaN	0	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320710			31699	10226	21895	21936							0.014964462861485117
KKGAKEKTP	9	Unmodified	_KKGAKEKTP_					0	0	0		ENSG00000169288|ENST00000315567|MRPL1	ENSG00000169288|ENST00000315567|MRPL1	ENSG00000169288|ENST00000315567|MRPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7720031738281	2	493.803291	985.59203	-0.48229	-0.00023816	-0.47992	-0.00023699	-0.96222	-0.00047515	493.80292391900633	33.585	0.72284	33.592	33.117	33.84	0.0066261					45	19	3	0	0	0	0.024447	1	2350	2350		25.574	0	1	775650			31700	7923	21896	21937	36345	36345					0.09865735714231505
KKGGGGGG	8	Unmodified	_KKGGGGGG_					0	0	0			REV__ENSG00000185960|ENST00000686671|SHOX	REV__ENSG00000185960|ENST00000686671|SHOX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	618.3054809570312	1	617.33655	616.329273	-0.19252	-0.00011885	2.8861	0.0017817	2.6936	0.0016628	617.3383718221245	83.476	0.45855	83.306	83.033	83.492	-0.16915					13	10	2	0	0	0	0.027866	1	10093	10093		8.8223	0	1	90186	+		31701	27816	21897	21938	36346	36346					0.005761597691048337
KKGGIPFLAE	10	Unmodified	_KKGGIPFLAE_					0	0	0			REV__ENSG00000178965|ENST00000326665|ERICH3	REV__ENSG00000178965|ENST00000326665|ERICH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2973022460938	2	530.313492	1058.61243	-0.62135	-0.00032951	0.18644	9.8873E-05	-0.43491	-0.00023064	530.3136086686352	65.476	1.0501	65.476	65.055	66.105	0					39	28	2	0	0	0	0.03519	1	7787	7787		26.693	0	1	1510300	+		31702	27218	21898	21939	36347	36347					0.08546906374044738
KKGHKNNV	8	Unmodified	_KKGHKNNV_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.77239990234375	2	462.772326	923.530098	0.34838	0.00016122	-0.29775	-0.00013779	0.050628	2.3429E-05	462.772063260141	18.16	0.68869	18.028	17.811	18.499	-0.13147					28	13	3	0	0	0	0.93274	1	237	237		47.916	0.25827	1	459380			31703	8984	21899	21940	36348	36348					0.06527429085747372
KKGKKLTKK	9	Unmodified	_KKGKKLTKK_					0	0	0		ENST00000373358.7_2_X:75397480-75397852:+|nuORF	ENST00000373358.7_2_X:75397480-75397852:+|nuORF	ENST00000373358.7_2_X:75397480-75397852:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.80810546875	2	529.874051	1057.73355	-0.35532	-0.00018828	-4.3523	-0.0023062	-4.7077	-0.0024945	529.8722307088717	73.412	0.29496	73.422	73.145	73.44	0.0096512					15	7	3	0	0	0	0.024541	1	8864	8864		10.866	6.8803	1	183710			31704	13074	21900	21941	36349	36349					0.20699153807345283
KKGKLKPVI	9	Unmodified	_KKGKLKPVI_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.32373046875	2	505.85787	1009.70119	0.40646	0.00020561	4.4047	0.0022281	4.8111	0.0024337	505.85813624257037	79.147	0.33264	78.892	78.687	79.02	-0.25471					11	7	2	0	0	0	0.024541	1	9457	9457		31.955	19.748	1	63600			31705	6481	21901	21942	36350	36350					0.19672366404370223
KKGKLLLTM	9	Unmodified	_KKGKLLLTM_					0	0	0			REV__ENST00000311275.11_1_20:45838578-45838890:-|nuORF	REV__ENST00000311275.11_1_20:45838578-45838890:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2706909179688	2	516.335913	1030.65727	-0.02343	-1.2098E-05	-0.063262	-3.2664E-05	-0.086692	-4.4762E-05	516.3358629397624	51.112	0.5793	51.112	50.956	51.535	0					25	15	2	0	0	0	0.024354	1	5396	5396		38.806	0	1	180070	+		31706	30204	21902	21943	36351	36351					0.1431701391570641
KKGKQRRR	8	Unmodified	_KKGKQRRR_					0	0	0			REV__ENST00000381813.4_1_2:10197463-10197871:-|nuORF	REV__ENST00000381813.4_1_2:10197463-10197871:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.8483276367188	2	528.84669	1055.67883	2.8229	0.0014929	-0.45529	-0.00024078	2.3676	0.0012521	528.8463987288379	17.584	0.24768	17.584	17.449	17.697	0					7	4	2	0	0	0	1.0574	1	187	187		25.45	2.4077	1	39372	+		31707	31527	21903	21944	36352	36352					0.15321579779310923
KKGLSIVG	8	Unmodified	_KKGLSIVG_					0	0	0			REV__ENST00000477335.5_1_X:77320697-77352173:+|nuORF	REV__ENST00000477335.5_1_X:77320697-77352173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.5721740722656	2	401.263271	800.511988	-1.0325	-0.00041428	1.5797	0.00063389	0.54728	0.0002196	401.26386921046856	33.103	0.47544	32.937	32.72	33.195	-0.16565					14	11	2	0	0	0	0.027866	1	2339	2339		31.955	2.8053	1	69465	+		31708	33330	21904	21945	36353	36353					0.10375294111042876
KKGQQIYV	8	Unmodified	_KKGQQIYV_					0	0	0		ENSG00000125879|ENST00000246081|OTOR	ENSG00000125879|ENST00000246081|OTOR	ENSG00000125879|ENST00000246081|OTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2641296386719	2	482.284734	962.554916	-1.0472	-0.00050505	-3.714	-0.0017912	-4.7612	-0.0022962	482.2826287227036	37.702	0.2069	37.619	37.57	37.777	-0.082516					7	5	2	0	0	0	0.027866	1	3104	3104		47.916	0	1	180250			31709	4160	21905	21946	36354	36354					0.07214064168454115
KKGTHKTN	8	Unmodified	_KKGTHKTN_					0	0	0			REV__nc|ENSG00000196268|Q6ZR52|ZNF493	REV__nc|ENSG00000196268|Q6ZR52|ZNF493	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.26446533203125	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.97794	1	10143	10143		40.778	3.6191	1	3048400	+		31710	28156	21906	21947	36355	36355					0.05435722848858404
KKGTHKTN	8	Unmodified	_KKGTHKTN_					0	0	0			REV__nc|ENSG00000196268|Q6ZR52|ZNF493	REV__nc|ENSG00000196268|Q6ZR52|ZNF493	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2642822265625	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.87148	1	10068	10068		53.351	7.3995	1	2920900	+		31711	28156	21906	21947	36356	36356					0.05435722848858404
KKGVPVKVT	9	Unmodified	_KKGVPVKVT_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3058166503906	2	478.318577	954.622602	-0.28104	-0.00013443	-0.74373	-0.00035574	-1.0248	-0.00049016	478.3179904446159	23.377	0.21171	23.453	23.392	23.604	0.076241					5	4	2	0	0	0	0.02435	1	874	874		42.396	0	1	39507			31712	4443	21907	21948	36357	36357					0.14347514099279124
KKHNLGIN	8	Unmodified	_KKHNLGIN_					0	0	0		ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	461.7951354980469	2	462.274701	922.534849	0.78043	0.00036077	-0.30119	-0.00013923	0.47924	0.00022154	462.27439683118524	18.534	0.59411	18.377	18.148	18.742	-0.15637					25	11	4	0	0	0	0.027866	1	304	304		26.796	5.8492	1	67682			31713	10310	21908	21949	36358	36358					0.070483132285176
KKHQSLLSF	9	Unmodified	_KKHQSLLSF_					0	0	0			REV__ENSG00000131127|ENST00000240499|ZNF141	REV__ENSG00000131127|ENST00000240499|ZNF141	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.314453125	2	544.316566	1086.61858	-0.62675	-0.00034115	-3.3257	-0.0018102	-3.9524	-0.0021514	544.3146867306606	42.33	0.84772	42.099	41.837	42.684	-0.23186					55	22	4	0	0	0	0.67687	1	3787	3787		47.657	1.7054	1	2930500	+		31714	23191	21909	21950	36359	36359					0.07873424605554646
KKHQSLLSF	9	Unmodified	_KKHQSLLSF_					0	0	0			REV__ENSG00000131127|ENST00000240499|ZNF141	REV__ENSG00000131127|ENST00000240499|ZNF141	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.314697265625	2	544.316566	1086.61858	-0.85438	-0.00046505	-3.4013	-0.0018514	-4.2556	-0.0023164	544.3146427028958	42.385	0.87344	42.155	41.797	42.67	-0.23029					65	23	4	0	0	0	0.75397	1	3803	3803		42.396	3.1433	1	2825900	+		31715	23191	21909	21950	36360	36360					0.07873424605554646
KKHWLARKTRH	11	Unmodified	_KKHWLARKTRH_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.78411865234375	3	487.628499	1459.86367	0.38825	0.00018932	-0.25229	-0.00012302	0.13596	6.6299E-05	487.6272099785623	101.33	1.0479	101.21	100.81	101.86	-0.12576					33	24	3	0	0	0	0.024851	1	12614	12614		9.6461	0	1	58498			31716	9378	21910	21951	36361	36361					0.15213142859033724
KKIAHNKEQAV	11	Unmodified	_KKIAHNKEQAV_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.368408203125	2	633.369861	1264.72517	1.1238	0.00071176	-2.2404	-0.001419	-1.1166	-0.00070723	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	0.87847	1	12066	12066		52.937	4.9772	1	8250400	+		31717	23899	21911	21952	36362	36362					0.1033955510006308
KKIAHNKEQAV	11	Unmodified	_KKIAHNKEQAV_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3714599609375	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	0.98904	1	11947	11947		39.253	1.4413	1	3181800	+		31718	23899	21911	21952	36363	36363					0.1033955510006308
KKIAHNKEQAV	11	Unmodified	_KKIAHNKEQAV_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3716430664062	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.9728	1	12003	12003		42.864	8.6917	1	9245900	+		31719	23899	21911	21952	36364	36364					0.1033955510006308
KKIAHSVF	8	Unmodified	_KKIAHSVF_					0	0	0		ENSG00000130304|ENST00000252595|SLC27A1;nc|ENSG00000130304|Q6PCB7-2|SLC27A1;ENST00000594962.5_1_19:17608063-17615347:+|nuORF	ENSG00000130304|ENST00000252595|SLC27A1	ENSG00000130304|ENST00000252595|SLC27A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.280029296875	2	465.281995	928.549437	0.28089	0.00013069	-4.4044	-0.0020493	-4.1235	-0.0019186	465.27981139819894	88.02	1.2618	87.888	87.477	88.739	-0.13254					76	30	4	0	0	0	1.0239	1	10727	10727		33.516	9.0116	1	1552700			31720	4409	21912	21953	36365	36365					0.08230385376668892
KKIARLYL	8	Unmodified	_KKIARLYL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.81365966796875	2	502.834394	1003.65424	0.41076	0.00020655	-0.58031	-0.0002918	-0.16955	-8.5254E-05	503.33408357962264	96.216	0.12331	96.08	95.978	96.101	-0.1367					4	2	2	0	0	0	0.027866	1	11875	11875		13.775	0	1	55304			31721	18451	21913	21954	36366	36366					0.15255506853213774
KKIDGLLI	8	Unmodified	_KKIDGLLI_					0	0	0		ENST00000498505.5_1_3:139068252-139075853:+|nuORF;ENSG00000175110|ENST00000680020|MRPS22	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.2474670410156	2	450.299853	898.585153	-0.044069	-1.9844E-05	0.52941	0.00023839	0.48534	0.00021855	450.3000470467372	39.514	0.53914	39.349	39.153	39.692	-0.16459					23	13	2	0	0	0	0.027866	1	3374	3374		40.573	0	1	231880			31722	8530	21914	21955	36367	36367					0.1318042283368186
KKIFSALSKCI	11	Unmodified	_KKIFSALSKCI_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8731689453125	2	619.370484	1236.72641	-0.36932	-0.00022875	1.1623	0.0007199	0.79299	0.00049115	619.3711950685711	100.23	0.72057	100.22	99.857	100.58	-0.0050812					48	19	3	0	0	0	1.0748	1	12718	12718		18.262	3.3972	1	919110	+		31723	24671	21915	21956	36368	36368					0.1175205314464165
KKIISLWSK	9	Unmodified	_KKIISLWSK_					0	0	0		nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B	nc|ENSG00000155324|Q96HH9-4|GRAMD2B	nc|ENSG00000155324|Q96HH9-4|GRAMD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.823974609375	2	551.852784	1101.69102	-0.25577	-0.00014115	-0.61592	-0.0003399	-0.8717	-0.00048105	551.8522729832304	61.182	0.36977	61.253	60.985	61.355	0.071125					13	9	2	0	0	0	0.024397	1	6978	6978		39.253	0	1	106280			31724	6468	21916	21957	36369	36369					0.14423758679117782
KKIKDALTE	9	Unmodified	_KKIKDALTE_					0	0	0		ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG;ENST00000466466.1_1_3:186024671-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2883911132812	2	523.316232	1044.61791	-0.37517	-0.00019633	-0.12783	-6.6898E-05	-0.50301	-0.00026323	523.3161384434796	28.288	0.56169	28.136	27.922	28.484	-0.15195					28	13	3	0	0	0	0.024447	1	1636	1636		40.778	9.2484	1	375650			31725	1219	21917	21958	36370	36370					0.09738585165860059
KKIKETLNL	9	Unmodified	_KKIKETLNL_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8475341796875	2	543.847699	1085.68084	0.19257	0.00010473	-0.54721	-0.0002976	-0.35464	-0.00019287	543.8473255092279	21.049	0.68781	20.853	20.582	21.27	-0.19577					39	13	4	0	0	0	0.28753	1	609	609		77.318	15.21	1	704270	+		31726	22472	21918	21959	36371	36371					0.14143150953873374
KKIKGSVL	8	Unmodified	_KKIKGSVL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.7747497558594	2	436.80002	871.585488	0.5273	0.00023032	-1.9673	-0.00085932	-1.44	-0.000629	436.7990219291	90.005	0.23637	90.019	89.924	90.161	0.013443					7	5	2	0	0	0	0.027866	1	11290	11290		25.45	8.0852	1	83289	+		31727	20082	21919	21960	36372	36372					0.14455842553513776
KKIKLEAM	8	Unmodified	_KKIKLEAM_					0	0	0		nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.80108642578125	2	480.799163	959.583773	0.37808	0.00018178	2.6419	0.0012702	3.02	0.001452	480.80031956512425	94.257	2.0083	94.257	93.77	95.778	0					166	47	6	0	0	0	1.0338	2	12028	12028;12065		31.955	5.1588	1	23477000			31728	11051	21920	21961	36373;36374	36373					0.10236465473235512
KKIKLEAM	8	Unmodified	_KKIKLEAM_					0	0	0		nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.8014221191406	2	480.799163	959.583773	-0.09375	-4.5075E-05	3.1194	0.0014998	3.0257	0.0014547	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	1.0338	1	12012	12012		31.955	0	1	24672000			31729	11051	21920	21961	36375	36375					0.10236465473235512
KKIKLEAM	8	Unmodified	_KKIKLEAM_					0	0	0		nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.8016052246094	2	480.799163	959.583773	-0.2816	-0.00013539	3.3072	0.0015901	3.0256	0.0014547	480.8006558847944	94.33	2.1067	94.192	93.703	95.809	-0.13779					175	48	6	0	0	0	0.99042	1	11699	11699		38.806	1.7777	1	20329000			31730	11051	21920	21961	36376	36376					0.10236465473235512
KKIKLEAM	8	Unmodified	_KKIKLEAM_					0	0	0		nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	nc|ENSG00000276644|Q9UI36-3|DACH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.8013610839844	2	480.799163	959.583773	0.090455	4.3491E-05	3.0156	0.0014499	3.1061	0.0014934	480.8005013291242	94.353	2.0213	94.206	93.738	95.76	-0.14771					162	46	6	0	0	0	1.0338	3	11690	11676;11690;11702		31.955	5.1588	1	14863000			31731	11051	21920	21961	36377;36378;36379	36378					0.10236465473235512
KKILGYINTG	10	Unmodified	_KKILGYINTG_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8307495117188	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.1286	1	10807	10807		25.574	2.5316	1	5986700			31732	3101	21921	21962	36380	36380					0.10094577919812764
KKINFHKITL	10	Unmodified	_KKINFHKITL_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.38916015625	2	621.390065	1240.76558	0.47212	0.00029337	4.2059	0.0026135	4.678	0.0029069	621.3926288383752	103.41	0.93773	103.28	103.02	103.96	-0.12723					48	21	4	0	0	0	1.0271	1	12840	12840		42.396	9.5837	1	622120			31733	3375	21922	21963	36381	36381					0.15482521490503132
KKINNITKMK	10	Unmodified	_KKINNITKMK_					0	0	0			REV__ENST00000498451.2_1_2:71361757-71361814:+|nuORF	REV__ENST00000498451.2_1_2:71361757-71361814:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.5849914550781	3	406.584797	1216.73256	0.36669	0.00014909	-2.3606	-0.00095978	-1.9939	-0.00081069	406.5837615324145	110.7	0.44067	110.58	110.51	110.95	-0.12525					30	15	2	0	0	0	1.1295	1	13625	13625		26.063	0	1	830120	+		31734	33880	21923	21964	36382	36382					0.13286571376124812
KKIQEWIPS	9	Unmodified	_KKIQEWIPS_					0	0	0		NDUFA12|p.P140S|1|0.11|ENSG00000184752|chr12:94971460-94971460|G/A|missense_variant	NDUFA12|p.P140S|1|0.11|ENSG00000184752|chr12:94971460-94971460|G/A|missense_variant	NDUFA12|p.P140S|1|0.11|ENSG00000184752|chr12:94971460-94971460|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8326416015625	2	564.824224	1127.63389	-0.23031	-0.00013009	-2.0638	-0.0011657	-2.2942	-0.0012958	564.8228291758616	54.348	0.18253	54.201	54.123	54.305	-0.14724					6	4	2	0	0	0	0.024323	1	5897	5897		44.117	1.7207	1	78089			31735	18867	21924	21965	36383	36383					0.07518291402743671
KKIQIELDKY	10	Unmodified	_KKIQIELDKY_					0	0	0			REV__ARFGAP3|p.M286I|1|0.18|ENSG00000242247|chr22:42817812-42817812|C/T|missense_variant	REV__ARFGAP3|p.M286I|1|0.18|ENSG00000242247|chr22:42817812-42817812|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.58624267578125	3	426.586972	1276.73909	1.0875	0.0004639	-3.3015	-0.0014084	-2.214	-0.00094448	426.5856060133131	18.428	0.93855	18.272	18.05	18.989	-0.15637					53	18	5	0	0	0	1.0728	1	311	311		36.318	1.1394	1	1333200	+		31736	19158	21925	21966	36384	36384					0.11178787808512425
KKIRRKREFR	10	Unmodified	_KKIRRKREFR_					0	0	0		ENST00000465873.5_1_9:138834060-138837107:-|nuORF;ENST00000471163.1_1_9:138834060-138839712:-|nuORF;ENSG00000130560|ENST00000371756|UBAC1	ENST00000465873.5_1_9:138834060-138837107:-|nuORF	ENST00000465873.5_1_9:138834060-138837107:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.284423828125	3	472.972266	1415.89497	0.35319	0.00016705	-2.856	-0.0013508	-2.5028	-0.0011838	473.3050629759634	50.324	2.0921	50.173	49.854	51.946	-0.1512					185	60	4	0	0	0	0.03519	1	5321	5321		17.468	2.7743	1	1414500			31737	4430	21926	21967	36385	36385					0.20365715893126435
KKISAKLEPIA	11	Unmodified	_KKISAKLEPIA_					0	0	0			REV__nc|ENSG00000146701|P40926-2|MDH2	REV__nc|ENSG00000146701|P40926-2|MDH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.379150390625	2	599.381906	1196.74926	-0.43786	-0.00026245	-2.7572	-0.0016526	-3.1951	-0.0019151	599.3801501968157	102.33	0.59103	102.21	102	102.59	-0.12666					41	13	5	0	0	0	0.99553	1	12722	12722		37.812	8.6415	1	662760	+		31738	24506	21927	21968	36386	36386					0.15875395533748815
KKISLPMSA	9	Unmodified	_KKISLPMSA_					0	0	0		ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7906799316406	2	487.788795	973.563038	0.37956	0.00018514	3.3532	0.0016356	3.7327	0.0018208	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.87448	1	10015	10015		34.173	8.7224	1	2659000			31739	6652	21928	21969	36387	36387					0.0751987509358969
KKISTLIS	8	Unmodified	_KKISTLIS_					0	0	0			REV__ENSG00000162994|ENST00000401408|CLHC1	REV__ENSG00000162994|ENST00000401408|CLHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.2885437011719	2	445.289485	888.564418	0.32759	0.00014587	-3.2991	-0.0014691	-2.9715	-0.0013232	445.2878785113918	90.033	1.2809	90.017	89.667	90.948	-0.016716					104	30	5	0	0	0	1.0574	1	11344	11344		12.959	0	1	2920200	+		31740	25517	21929	21970	36388	36388					0.11567832453999927
KKITPKLPDP	10	Unmodified	_KKITPKLPDP_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8533935546875	2	568.855524	1135.69649	-0.25628	-0.00014578	-3.6319	-0.0020661	-3.8882	-0.0022118	568.8533241327464	101.1	1.4966	101.11	100.79	102.28	0.0090332					103	34	5	0	0	0	1.0992	1	12897	12897		32.812	1.2826	1	8744300	+		31741	36829	21930	21971	36389	36389					0.1340743747093711
KKIVKVIDPN	10	Unmodified	_KKIVKVIDPN_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.3663940429688	2	577.368798	1152.72304	-0.17168	-9.9121E-05	-3.7011	-0.0021369	-3.8728	-0.002236	577.3665334259606	101.3	0.81555	101.13	100.88	101.69	-0.17178					47	17	4	0	0	0	1.089	1	12563	12563		34.173	1.3601	1	911130	+		31742	26857	21931	21972	36390	36390					0.1527912636227029
KKKAAKKK	8	Unmodified	_KKKAAKKK_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2;REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.28680419921875	2	465.334562	928.65457	-0.25405	-0.00011822	0.19628	9.1336E-05	-0.057769	-2.6882E-05	465.33506308769614	75.559	0.40493	75.3	75.033	75.438	-0.25866					13	9	2	0	0	0	0.027866	1	8921	8921		3.6843	0	1	263760			31743	1019;20050	21932	21973	36391	36391					0.18738926573075787
KKKAELYIN	9	Unmodified	_KKKAELYIN_					0	0	0			REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF	REV__ENST00000464839.5_1_1:89591553-89613456:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8300170898438	2	553.832049	1105.64954	-0.047374	-2.6237E-05	-3.6408	-0.0020164	-3.6882	-0.0020426	553.829864190126	87.126	2.4196	87.09	85.747	88.167	-0.035355					169	57	4	0	0	0	0.89441	1	10891	10891		32.812	2.3088	1	1369000	+		31744	32991	21933	21974	36392	36392					0.10094577919812764
KKKALSDAPE	10	Unmodified	_KKKALSDAPE_					0	0	0			REV__nc|ENSG00000187783|A0PK05-2|TMEM72	REV__nc|ENSG00000187783|A0PK05-2|TMEM72	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.7665405273438	2	543.811313	1085.60807	-0.23099	-0.00012562	0.11216	6.0992E-05	-0.11883	-6.4624E-05	543.8110159025892	46.056	0.79769	45.96	45.741	46.539	-0.096649					40	21	3	0	0	0	0.03519	1	4501	4501		32.812	8.6097	1	668190	+		31745	27974	21934	21975	36393	36393					0.06869397160448898
KKKCCCKKCI	10	Unmodified	_KKKCCCKKCI_					0	0	0			REV__ENSG00000143858|ENST00000367268|SYT2	REV__ENSG00000143858|ENST00000367268|SYT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	593.8088989257812	2	592.810367	1183.60618	-0.049154	-2.9139E-05	0.1853	0.00010985	0.13614	8.0708E-05	592.8102892576103	21.334	0.3376	21.405	21.254	21.591	0.071487					10	6	2	0	0	0	0.03519	1	607	607		19.997	0	1	22756	+		31746	24292	21935	21976	36394	36394					0.021722822833453392
KKKCFTLL	8	Carbamidomethyl (C)	_KKKC(Carbamidomethyl (C))FTLL_	KKKC(1)FTLL		KKKC(77)FTLL		0	1	0		nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4;ENST00000554446.5_1_14:23416818-23424363:-|nuORF;ENST00000554349.5_1_14:23417204-23426210:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;ENST00000554373.5_1_14:23417204-23426142:-|nuORF	nc|ENSG00000092036|Q9H6D7-3|HAUS4	nc|ENSG00000092036|Q9H6D7-3|HAUS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.3145751953125	2	519.312438	1036.61032	0.36865	0.00019144	-0.22204	-0.00011531	0.1466	7.6132E-05	519.3121530394578	70.788	0.9466	70.788	70.316	71.263	0					51	22	5	0	0	0	0.59392	1	8550	8550		76.847	11.043	1	1375400			31747	1974	21936	21977	36395	36395	25				0.09348154364579386
KKKDRFYRSIL	11	Unmodified	_KKKDRFYRSIL_					0	0	0		ENST00000533568.5_1_11:77069900-77103583:-|nuORF;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENST00000533568.5_1_11:77069900-77103583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.26129150390625	3	485.292782	1452.85652	-0.092042	-4.4667E-05	-2.3863	-0.001158	-2.4783	-0.0012027	485.2910317815865	46.256	0.42487	46.256	46.09	46.515	0					25	11	4	0	0	0	0.024856	1	4580	4580		18.531	12.21	1	574450			31748	6077	21937	21978	36396	36396					0.14820365467994634
KKKDRYKP	8	Unmodified	_KKKDRYKP_					0	0	0			REV__nc|ENSG00000100884|O95741-2|CPNE6	REV__nc|ENSG00000100884|O95741-2|CPNE6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.2738037109375	2	531.824558	1061.63456	-0.74736	-0.00039746	-0.36393	-0.00019355	-1.1113	-0.00059101	531.8243980619651	49.839	0.43256	49.839	49.62	50.052	0					20	11	2	0	0	0	0.027866	1	5194	5194		35.618	18.253	1	209010	+		31749	36524	21938	21979	36397	36397					0.10621130842446291
KKKFFIYMIYY	11	Unmodified	_KKKFFIYMIYY_					0	0	0			REV__ENST00000373670.5_1_9:125611733-125611871:-|nuORF	REV__ENST00000373670.5_1_9:125611733-125611871:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.76220703125	3	515.284236	1542.83088	-0.18608	-9.5883E-05	-4.3153	-0.0022236	-4.5013	-0.0023195	515.281625607459	42.384	0.41726	42.261	42.037	42.454	-0.12299					18	10	3	0	0	0	0.024865	1	3799	3799		6.6596	0	1	100670	+		31750	31268	21939	21980	36398	36398					0.08117754901377339
KKKFFIYMIYY	11	Unmodified	_KKKFFIYMIYY_					0	0	0			REV__ENST00000373670.5_1_9:125611733-125611871:-|nuORF	REV__ENST00000373670.5_1_9:125611733-125611871:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7622680664062	3	515.284236	1542.83088	-0.35594	-0.00018341	-4.2535	-0.0021918	-4.6095	-0.0023752	515.2819645288276	42.579	0.34009	42.348	42.117	42.457	-0.23186					13	8	2	0	0	0	0.024869	1	3816	3816		6.3209	0	1	111010	+		31751	31268	21939	21980	36399	36399					0.08117754901377339
KKKFVLFKN	9	Unmodified	_KKKFVLFKN_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8011474609375	2	576.368601	1150.72265	-0.47765	-0.0002753	2.0391	0.0011753	1.5615	0.00089997	576.3696825546688	53.461	0.49927	53.264	53.089	53.588	-0.19739					20	13	2	0	0	0	0.024523	1	5611	5611		21.96	4.5949	1	93383	+		31752	24589	21940	21981	36400	36400					0.15331751433109275
KKKFVLFKN	9	Unmodified	_KKKFVLFKN_					0	0	0			REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	REV__nc|ENSG00000147912|Q9UK96-2|FBXO10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.368601	1150.72265	-0.5006	-0.00028853	3.119	0.0017977	2.6184	0.0015092	576.370224750943	53.809	0.16705	53.564	53.458	53.625	-0.2453	0.14993	0.00064835	NaN	27.882	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95295	+		31753	24589	21940	21981							0.15331751433109275
KKKGCPLVR	9	Unmodified	_KKKGCPLVR_					0	0	0			REV__ENST00000418154.1_1_1:64254543-64254969:-|nuORF	REV__ENST00000418154.1_1_1:64254543-64254969:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.822021484375	2	514.823504	1027.63245	-0.59286	-0.00030522	-3.2881	-0.0016928	-3.881	-0.001998	514.8216817149673	56.719	1.3064	56.554	56.313	57.619	-0.16431					79	35	4	0	0	0	0.59099	1	6323	6323		53.351	2.016	1	4355000	+		31754	32110	21941	21982	36401	36401					0.11974378833019728
KKKGKEKAE	9	Unmodified	_KKKGKEKAE_					0	0	0		ENST00000539576.5_1_12:123465834-123466670:+|nuORF;ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-5|ARL6IP4;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-9|ARL6IP4;nc|ENSG00000182196|Q66PJ3-7|ARL6IP4;ENSG00000182196|ENST00000315580|ARL6IP4;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;nc|ENSG00000182196|Q66PJ3-3|ARL6IP4;nc|ENSG00000182196|Q66PJ3-2|ARL6IP4;nc|ENSG00000182196|Q66PJ3-1|ARL6IP4	ENST00000539576.5_1_12:123465834-123466670:+|nuORF	ENST00000539576.5_1_12:123465834-123466670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2799072265625	2	523.321848	1044.62914	-1.3056	-0.00068323	-0.67024	-0.00035075	-1.9758	-0.001034	523.3214514242792	38.746	0.39957	38.746	38.433	38.833	0					14	9	2	0	0	0	0.024436	1	3260	3260		38.806	0	1	111180			31755	16403	21942	21983	36402	36402					0.10861407259972111
KKKGKKSSSA	10	Unmodified	_KKKGKKSSSA_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.8270263671875	2	524.827298	1047.64004	-0.67595	-0.00035475	-0.00066869	-3.5095E-07	-0.67661	-0.00035511	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	1.1329	1	12549	12549		27.882	3.6795	1	14120000			31756	4975	21943	21984	36403	36403					0.11812809634284349
KKKGRKIP	8	Unmodified	_KKKGRKIP_					0	0	0		ENST00000481482.5_1_7:138818528-138853308:+|nuORF;nc|ENSG00000105948|A0AVF1-2|IFT56;nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.8337097167969	2	477.832186	953.649819	0.39262	0.00018761	2.883	0.0013776	3.2756	0.0015652	477.8334281447745	105.79	1.1708	105.79	105.37	106.54	-0.0013199					118	39	4	0	0	0	1.0574	1	13539	13539		13.775	0.81615	1	1956600			31757	15230	21944	21985	36404	36404					0.17114042430318932
KKKHALLLA	9	Unmodified	_KKKHALLLA_					0	0	0			REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	REV__nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7641906738281	2	511.347669	1020.68079	-1.1809	-0.00060386	0.57986	0.00029651	-0.60105	-0.00030734	511.34786935241567	26.058	0.34866	25.895	25.631	25.98	-0.16331					16	9	2	0	0	0	0.024541	1	1229	1229		12.959	0	1	178680	+		31758	21926	21945	21986	36405	36405					0.17127195744546952
KKKHKGGS	8	Unmodified	_KKKHKGGS_					0	0	0		nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5	nc|ENSG00000168395|Q8WYH8-2|ING5	nc|ENSG00000168395|Q8WYH8-2|ING5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77978515625	2	435.269419	868.524284	0.27273	0.00011871	-0.76391	-0.0003325	-0.49118	-0.00021379	435.26888937507334	38.689	0.42347	38.463	38.246	38.669	-0.2257					18	10	2	0	0	0	0.027866	1	3196	3196		38.806	14.603	1	96530			31759	7819	21946	21987	36406	36406					0.08476330574103486
KKKHRRRPSK	10	Unmodified	_KKKHRRRPSK_					0	0	0		ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	3	440.953094	1319.83745	-0.47288	-0.00020852	-0.781	-0.00034439	-1.2539	-0.0005529	441.2870623120578	43.375	0.41482	43.138	42.759	43.174	-0.23737					13	10	2	0	0	0	0.03519	1	3903	3903		10.587	0	1	108580			31760	9580	21947	21988	36407	36407					0.19032873687592655
KKKHVGGI	8	Unmodified	_KKKHVGGI_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.75146484375	2	433.782162	865.549771	-0.028778	-1.2483E-05	1.109	0.00048106	1.0802	0.00046857	433.7820668814989	19.638	0.43725	19.52	19.249	19.686	-0.11872					17	8	3	0	0	0	0.027866	1	424	424		26.796	2.5934	1	34423			31761	18456	21948	21989	36408	36408					0.11161805096514854
KKKHVGGI	8	Unmodified	_KKKHVGGI_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	433.782162	865.549771	2.7159	0.0011781	-1.4433	-0.00062608	1.2726	0.00055201	433.7809598627233	19.6	0.5384	19.667	19.291	19.829	0.066195	0.073454	-0.00072147	NaN	33.516	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31382			31762	18456	21948	21989							0.11161805096514854
KKKIDKSSH	9	Unmodified	_KKKIDKSSH_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2843017578125	2	535.819473	1069.62439	-1.4468	-0.00077521	1.5364	0.00082325	0.089653	4.8038E-05	535.819602758053	37.691	0.48833	37.609	37.36	37.848	-0.082516					30	13	4	0	0	0	0.024466	1	3113	3113		39.253	15.05	1	406410	+		31763	20075	21949	21990	36409	36409					0.09236523117260731
KKKIDKSSH	9	Unmodified	_KKKIDKSSH_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.819473	1069.62439	-1.4749	-0.0007903	0.56438	0.00030241	-0.91056	-0.0004879	535.8196116458116	37.864	0.56908	37.896	37.563	38.132	0.032272	0.13498	-0.00040911	NaN	45.972	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325000	+		31764	20075	21949	21990							0.09236523117260731
KKKIHKLL	8	Unmodified	_KKKIHKLL_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1;REV__ENSG00000122728|ENST00000242310|TAF1L	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.3270263671875	2	504.358037	1006.70152	0.24132	0.00012171	3.4776	0.0017539	3.7189	0.0018757	504.35964006894443	17.918	0.19714	17.775	17.651	17.849	-0.14278					5	3	2	0	0	0	0.027866	1	223	223		42.474	23.114	1	9115.8	+		31765	36762;22661	21950	21991	36410	36410					0.1984378612422688
KKKISHYYE	9	Unmodified	_KKKISHYYE_					0	0	0		ENSG00000187658|ENST00000409999|C5orf52	ENSG00000187658|ENST00000409999|C5orf52	ENSG00000187658|ENST00000409999|C5orf52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.2598266601562	2	598.327131	1194.63971	-0.75196	-0.00044992	-0.32662	-0.00019543	-1.0786	-0.00064535	598.3277570010795	64.882	0.35274	64.627	64.426	64.778	-0.25562					15	8	3	0	0	0	0.024292	1	7379	7379		40.778	0	1	139920			31766	9646	21951	21992	36411	36411					0.050173899144283496
KKKKAGIVL	9	Unmodified	_KKKKAGIVL_					0	0	0			REV__ENST00000510078.5_1_3:129112488-129115182:-|nuORF	REV__ENST00000510078.5_1_3:129112488-129115182:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7765197753906	2	492.850045	983.685536	-0.20609	-0.00010157	-0.0065234	-3.215E-06	-0.21261	-0.00010479	492.8498730437059	32.396	0.78022	32.238	31.948	32.728	-0.15772					39	18	3	0	0	0	0.024541	1	2233	2233		25.45	6.0902	1	641900	+		31767	34097	21952	21993	36412	36412					0.1930407988730849
KKKKAGIVL	9	Unmodified	_KKKKAGIVL_					0	0	0			REV__ENST00000510078.5_1_3:129112488-129115182:-|nuORF	REV__ENST00000510078.5_1_3:129112488-129115182:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.850045	983.685536	-0.42216	-0.00020806	0.27843	0.00013722	-0.14373	-7.0839E-05	492.85005148013767	32.392	0.87907	32.156	31.867	32.746	-0.23667	-0.033546	0.00037442	NaN	25.45	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	582360	+		31768	34097	21952	21993							0.1930407988730849
KKKKAKGR	8	Unmodified	_KKKKAKGR_					0	0	0			REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF	REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2953796386719	2	472.329811	942.645068	-0.059484	-2.8096E-05	-4.0452	-0.0019107	-4.1047	-0.0019388	472.32661975530357	34.346	0.19627	34.139	34.005	34.201	-0.20696					6	4	2	0	0	0	0.027866	1	2502	2502		8.8223	0.59103	1	44720	+		31769	30351	21953	21994	36413	36413					0.17145158287553386
KKKKEKHRE	9	Unmodified	_KKKKEKHRE_					0	0	0			REV__ENSG00000028310|ENST00000467963|BRD9	REV__ENSG00000028310|ENST00000467963|BRD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8720092773438	2	605.872571	1209.73059	-0.92863	-0.00056263	-0.019761	-1.1972E-05	-0.94839	-0.0005746	605.8723603924029	98.583	1.08	98.583	98.233	99.313	0					66	24	4	0	0	0	0.97973	1	12648	12648		24.519	1.4767	1	1252900	+		31770	20035	21954	21995	36414	36414					0.13411278682565353
KKKKGSKAL	9	Unmodified	_KKKKGSKAL_					0	0	0		ENST00000481407.5_1_7:92207439-92210911:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	ENST00000481407.5_1_7:92207439-92210911:-|nuORF	ENST00000481407.5_1_7:92207439-92210911:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28924560546875	2	494.337301	986.66005	0.38225	0.00018896	-1.7237	-0.00085208	-1.3414	-0.00066312	494.33712956217875	61.623	0.19679	61.396	61.298	61.495	-0.22663					8	4	3	0	0	0	0.024381	1	7096	7096		45.952	0	1	186880			31771	10722	21955	21996	36415	36415					0.1661860536489712
KKKKHRDRKSS	11	Unmodified	_KKKKHRDRKSS_					0	0	0		nc|ENSG00000121766|Q9NP64-2|ZCCHC17;nc|ENSG00000121766|Q9NP64-3|ZCCHC17;ENSG00000121766|ENST00000344147|ZCCHC17	nc|ENSG00000121766|Q9NP64-2|ZCCHC17	nc|ENSG00000121766|Q9NP64-2|ZCCHC17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.62127685546875	3	466.619781	1396.83751	0.15231	7.1069E-05	3.4899	0.0016284	3.6422	0.0016995	466.62143840072247	46.584	0.71166	46.487	46.259	46.971	-0.096649					84	19	6	0	0	0	1.0811	1	4504	4504		16.53	2.2866	1	42650000			31772	3888	21956	21997	36416	36416					0.15496828896925763
KKKKIEESS	9	Unmodified	_KKKKIEESS_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7991333007812	2	538.819138	1075.62372	0.40845	0.00022008	3.6112	0.0019458	4.0196	0.0021658	538.8210610111018	70.922	0.77811	70.629	70.411	71.189	-0.29291					31	18	3	0	0	0	0.024523	1	8539	8539		15.642	7.9515	1	647690	+		31773	19939	21957	21998	36417	36417					0.08893683677524677
KKKKKDSV	8	Unmodified	_KKKKKDSV_					0	0	0		ENSG00000181585|ENST00000643606|TMIE	REV__ENSG00000125482|ENST00000334270|TTF1	REV__ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.95489501953125	2	480.813659	959.612765	0.94888	0.00045623	-0.8909	-0.00042835	0.057984	2.788E-05	480.81306535488164	19.94	0.832	19.717	19.483	20.315	-0.22344					35	16	4	0	0	0	0.027866	1	448	448		25.45	3.7478	1	236800	+		31774	22822	21958	21999	36418	36418					0.13134326093904747
KKKKKKKC	8	Unmodified	_KKKKKKKC_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|58|3|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|58|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7637939453125	2	509.849522	1017.68449	-0.59701	-0.00030439	3.1631	0.0016127	2.5661	0.0013083	509.85182199675756	49.111	0.18852	49.011	48.88	49.068	-0.1008					6	4	2	0	0	0	0.027866	1	4918	4918		4.3163	2.8514	1	76955	+		31775	31635	21959	22000	36419	36419					0.1763554224676227
KKKKKKKKVL	10	Unmodified	_KKKKKKKKVL_					0	0	0			REV__ENSG00000103550|ENST00000219837|KNOP1	REV__ENSG00000103550|ENST00000219837|KNOP1	MSMS	OPSCC_39_ClassI_Rep-3	3	419.3146667480469	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.34	1	111.35	110.85	111.85	0.0069427								0	0	0	0.77833	1	13974	13974		0.48304	0	1		+		31776	21398	21960	22001	36420	36420					0.3054822610067731
KKKKKKKVIVL	11	Unmodified	_KKKKKKKVIVL_					0	0	0			REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF	REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	447.3326416015625	3	447.33403	1338.98026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.6	1	108.46	107.96	108.96	-0.13649								0	0	0	1.823	1	13415	13415		0.3405	0.028245	1		+		31777	31634	21961	22002	36421	36421					0.3243306830624988
KKKKKKLH	8	Unmodified	_KKKKKKLH_					0	0	0			REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56	REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.3515625	2	519.368936	1036.72332	0.461	0.00023943	-1.964	-0.00102	-1.503	-0.0007806	519.3676797310055	81.263	0.1657	81.069	80.924	81.09	-0.19334					5	3	2	0	0	0	0.027866	1	9766	9766		1.4648	1.4648	1	50034	+		31778	36916	21962	22003	36422	36422					0.2064259087278515
KKKKKKSF	8	Unmodified	_KKKKKKSF_					0	0	0		ENST00000344423.9_1_8:28205640-28205820:-|nuORF	REV__nc|ENSG00000145860|Q96MT1-4|RNF145	REV__nc|ENSG00000145860|Q96MT1-4|RNF145	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7645568847656	2	511.347669	1020.68079	-0.35508	-0.00018157	0.15804	8.0815E-05	-0.19704	-0.00010075	511.34776339947985	25.834	0.39343	25.663	25.413	25.807	-0.17078					14	9	2	0	0	0	0.027866	1	1242	1242		26.796	7.4361	1	86875	+		31779	36754	21963	22004	36423	36423					0.1712719574455832
KKKKKKVKKI	10	Unmodified	_KKKKKKVKKI_					0	0	0			REV__ENSG00000187257|ENST00000334955|RSBN1L	REV__ENSG00000187257|ENST00000334955|RSBN1L	MSMS	OPSCC_39_ClassI_Rep-3	3	419.3152160644531	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.42	1	111.42	110.92	111.92	0.0069427								0	0	0	0.77833	1	13978	13978		0.5277	0	1		+		31780	27926	21964	22005	36424	36424					0.3054822610070005
KKKKKLLLF	9	Unmodified	_KKKKKLLLF_					0	0	0			REV__ENST00000485024.1_1_3:184529997-184533630:+|nuORF	REV__ENST00000485024.1_1_3:184529997-184533630:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2786865234375	2	573.410269	1144.80599	-0.29877	-0.00017132	2.5889	0.0014845	2.2901	0.0013132	573.4114920454838	77.673	0.21304	77.511	77.398	77.611	-0.16196					6	4	2	0	0	0	0.024541	1	9252	9252		1.3276	0	1	37650	+		31781	33551	21965	22006	36425	36425					0.23937487880948538
KKKKKLVFF	9	Unmodified	_KKKKKLVFF_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.3773803710938	2	583.394619	1164.77469	-0.99299	-0.0005793	1.5426	0.00089995	0.54962	0.00032064	583.8956798068537	46.4	0.23212	46.139	45.968	46.2	-0.26118					8	5	2	0	0	0	0.024541	1	4428	4428		1.2052	0	1	58267	+		31782	34166	21966	22007	36426	36426					0.19888914846842454
KKKKKSHS	8	Unmodified	_KKKKKSHS_					0	0	0		ENST00000263464.7_1_11:102193503-102193566:+|nuORF	ENST00000263464.7_1_11:102193503-102193566:+|nuORF	ENST00000263464.7_1_11:102193503-102193566:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.8124694824219	2	485.811451	969.608348	0.40498	0.00019674	2.0691	0.0010052	2.474	0.0012019	485.8123485160711	89.125	2.098	88.987	88.607	90.705	-0.13762					128	49	4	0	0	0	1.0574	1	10918	10918		25.45	1.2474	1	3117100			31783	11536	21967	22008	36427	36427					0.12232861670997863
KKKKKVKG	8	Unmodified	_KKKKKVKG_					0	0	0			REV__ENSG00000103550|ENST00000219837|KNOP1	REV__ENSG00000103550|ENST00000219837|KNOP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2877502441406	2	472.342387	942.67022	0.47975	0.00022661	4.3224	0.0020416	4.8021	0.0022682	472.3443861550559	94.362	0.36497	94.24	94.058	94.423	-0.12215					14	8	2	0	0	0	0.027866	1	11661	11661		1.3276	0	1	130530	+		31784	21398	21968	22009	36428	36428					0.19659213090130834
KKKKVCSI	8	Unmodified	_KKKKVCSI_					0	0	0			REV__ENST00000491834.5_1_3:3192120-3192273:-|nuORF	REV__ENST00000491834.5_1_3:3192120-3192273:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.3008117675781	2	467.29933	932.584108	-0.63404	-0.00029629	3.3242	0.0015534	2.6901	0.0012571	467.30078445946174	92.148	1.2787	92.148	91.772	93.051	0					66	30	3	0	0	0	1.0574	1	11670	11670		19.36	6.4008	1	1791000	+		31785	33732	21969	22010	36429	36429					0.11511885193101534
KKKKVCSI	8	Unmodified	_KKKKVCSI_					0	0	0			REV__ENST00000491834.5_1_3:3192120-3192273:-|nuORF	REV__ENST00000491834.5_1_3:3192120-3192273:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.3004455566406	2	467.29933	932.584108	0.99819	0.00046645	1.83	0.00085517	2.8282	0.0013216	467.3000383657387	92.166	1.0564	92.175	91.832	92.888	0.0094147					68	25	4	0	0	0	1.0574	1	11599	11599		13.775	0.81615	1	1808300	+		31786	33732	21969	22010	36430	36430					0.11511885193101534
KKKKVKKS	8	Unmodified	_KKKKVKKS_					0	0	0		ENST00000337872.8_1_4:4304620-4317556:+|nuORF	ENST00000337872.8_1_4:4304620-4317556:+|nuORF	ENST00000337872.8_1_4:4304620-4317556:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.3000793457031	2	487.347669	972.680785	0.077847	3.7939E-05	3.9828	0.001941	4.0607	0.0019789	487.34928380824374	58.142	0.24696	58.142	57.946	58.193	0					8	6	2	0	0	0	0.027866	1	6559	6559		12.959	5.2689	1	115850			31787	12430	21970	22011	36431	36431					0.1933519574456568
KKKKVLVW	8	Unmodified	_KKKKVLVW_					0	0	0		ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8028564453125	2	514.852587	1027.69062	-0.37383	-0.00019247	0.58635	0.00030188	0.21252	0.00010942	514.8535114138515	59.558	0.22663	59.644	59.501	59.728	0.085682					9	5	2	0	0	0	0.027866	1	6729	6729		0	0	1	93755			31788	9406	21971	22012	36432	36432					0.17788383749962122
KKKKVLVW	8	Unmodified	_KKKKVLVW_					0	0	0		ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8394165039062	2	514.852587	1027.69062	-0.71108	-0.0003661	1.6086	0.00082821	0.89757	0.00046211	514.8534589010886	57.327	0.22044	57.16	57.071	57.291	-0.1672					6	5	2	0	0	0	0.027866	1	6251	6251		4.6817	4.6817	1	113540			31789	9406	21971	22012	36433	36433					0.17788383749962122
KKKLEDGSLS	10	Unmodified	_KKKLEDGSLS_					0	0	0		nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;ENSG00000163798|ENST00000326019|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.8008422851562	2	552.816596	1103.61864	0.93484	0.00051679	-0.16665	-9.2129E-05	0.76819	0.00042467	552.8164811797965	19.877	0.39575	19.677	19.355	19.751	-0.2001					17	7	3	0	0	0	0.03519	1	431	431		35.618	0	1	34773			31790	18452	21972	22013	36434	36434					0.07097379814922533
KKKLEEIVQP	10	Unmodified	_KKKLEEIVQP_					0	0	0		HSPA5|p.E622K|1|0.4|ENSG00000044574|chr9:125236693-125236693|C/T|missense_variant	HSPA5|p.E622K|1|0.4|ENSG00000044574|chr9:125236693-125236693|C/T|missense_variant	HSPA5|p.E622K|1|0.4|ENSG00000044574|chr9:125236693-125236693|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.3701782226562	2	606.371538	1210.72852	-0.71977	-0.00043645	-2.5924	-0.001572	-3.3122	-0.0020084	606.3698624712221	92.607	2.6722	92.599	91.708	94.381	-0.0082855					144	64	4	0	0	0	1.1265	1	11719	11719		24.519	3.5723	1	575490			31791	17751	21973	22014	36435	36435					0.13158805154080255
KKKLFALKASL	11	Unmodified	_KKKLFALKASL_					0	0	0			REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF	REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	623.9158935546875	2	623.915916	1245.81728	0.44867	0.00027993	-0.65474	-0.0004085	-0.20607	-0.00012857	623.9155615335451	107.46	0.17195	107.46	107.39	107.56	-0.003479					8	6	2	0	0	0	1.1096	1	13755	13755		8.6937	1.0034	1	2270500	+		31792	31330	21974	22015	36436	36436					0.2042026518442981
KKKLFALKASL	11	Unmodified	_KKKLFALKASL_					0	0	0			REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF	REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	623.9158935546875	2	623.915916	1245.81728	-2.2044	-0.0013754	1.9867	0.0012396	-0.21766	-0.0001358	623.917118372418	107.48	0.081902	107.34	107.31	107.39	-0.1346					5	3	2	0	0	0	1.1059	1	13343	13343		9.7057	1.4706	1	1812200	+		31793	31330	21974	22015	36437	36437					0.2042026518442981
KKKLLIHN	8	Unmodified	_KKKLLIHN_					0	0	0		HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant	HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant	HCAR3|p.Q170H|1|0.14|ENSG00000255398|chr12:122716228-122716228|C/G|missense_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	497.32855224609375	2	497.332019	992.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.65	1	105.65	105.15	106.15	0								0	0	0	1.1164	1	13566	13566		13.775	0.81615	1				31794	17705	21975	22016	36438	36438					0.15286622710470965
KKKLLSTKP	9	Unmodified	_KKKLLSTKP_					0	0	0			REV__ENST00000471830.1_1_20:3888626-3888701:+|nuORF	REV__ENST00000471830.1_1_20:3888626-3888701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.306396484375	2	521.852784	1041.69102	-0.7807	-0.00040741	0.4016	0.00020958	-0.37909	-0.00019783	521.8528775499408	53.177	0.39745	53.177	52.974	53.372	0					15	10	2	0	0	0	0.024495	1	5725	5725		34.173	0	1	180900	+		31795	33185	21976	22017	36439	36439					0.17183758679129824
KKKNIMRPHK	10	Unmodified	_KKKNIMRPHK_					0	0	0			REV__SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|32|2|sense	REV__SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|32|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2642517089844	3	427.26417	1278.77068	0.50024	0.00021373	0.084082	3.5925E-05	0.58432	0.00024966	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.118	1	5759	5759		20.03	0.7678	1	61030000	+		31796	37591	21977	22018	36440	36440					0.14244502081464816
KKKNVTEFI	9	Unmodified	_KKKNVTEFI_					0	0	0		ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.830078125	2	553.832049	1105.64954	-0.41945	-0.00023231	-3.2453	-0.0017974	-3.6648	-0.0020297	553.8300910738014	101.35	0.94011	101.36	101.13	102.07	0.0090332					52	21	4	0	0	0	0.89441	1	12950	12950		32.812	2.3088	1	801420			31797	10626	21978	22019	36441	36441					0.10094577919812764
KKKPEESAPL	10	Unmodified	_KKKPEESAPL_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24;KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	nc|ENSG00000186638|Q5T7B8-4|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.8118896484375	2	563.826963	1125.63937	1.0964	0.00061819	0.070491	3.9745E-05	1.1669	0.00065794	563.8267866387497	17.752	0.39938	17.598	17.408	17.807	-0.15403					11	7	2	0	0	0	0.03519	1	229	229		19.997	10.291	1	19845			31798	9567	21979	22020	36442	36442					0.08157970194565678
KKKPEESAPL	10	Unmodified	_KKKPEESAPL_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24;KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	nc|ENSG00000186638|Q5T7B8-4|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.826963	1125.63937	-0.15452	-8.7124E-05	-4.486	-0.0025293	-4.6405	-0.0026164	563.8243176658837	17.497	0.19861	17.29	17.166	17.364	-0.20669	-0.17442	-0.00082622	NaN	14.137	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10443			31799	9567	21979	22020							0.08157970194565678
KKKPVVTI	8	Unmodified	_KKKPVVTI_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.767333984375	2	456.81567	911.616788	0.013864	6.3333E-06	-2.7334	-0.0012486	-2.7195	-0.0012423	456.8142842716226	23.157	0.38072	23.157	22.94	23.321	0					18	8	3	0	0	0	0.027866	1	854	854		20.482	5.8177	1	33638			31800	7160	21980	22021	36443	36443					0.15744415587607818
KKKQNGEP	8	Unmodified	_KKKQNGEP_					0	0	0			REV__ENST00000595407.1_1_19:41939391-41944316:-|nuORF	REV__ENST00000595407.1_1_19:41939391-41944316:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.255859375	2	464.764166	927.513779	0.20913	9.7197E-05	-0.79078	-0.00036753	-0.58165	-0.00027033	464.7637763349094	36.774	0.49723	36.774	36.508	37.005	0					17	12	2	0	0	0	0.027866	1	2972	2972		30.504	11.144	1	192370	+		31801	21514	21981	22022	36444	36444					0.04712303128997064
KKKQNGEP	8	Unmodified	_KKKQNGEP_					0	0	0			REV__ENST00000595407.1_1_19:41939391-41944316:-|nuORF	REV__ENST00000595407.1_1_19:41939391-41944316:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2555847167969	2	464.764166	927.513779	-0.27421	-0.00012744	-0.18192	-8.4551E-05	-0.45613	-0.00021199	464.76393502678445	36.562	0.57168	36.52	36.315	36.887	-0.042454					25	14	2	0	0	0	0.027866	1	2932	2932		45.952	0	1	181670	+		31802	21514	21981	22022	36445	36445					0.04712303128997064
KKKQVAVAE	9	Unmodified	_KKKQVAVAE_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.8052978515625	2	500.811116	999.60768	0.027771	1.3908E-05	-0.062812	-3.1457E-05	-0.035041	-1.7549E-05	500.81096795633755	42.383	1.1452	42.409	42.152	43.298	0.026012					94	31	4	0	0	0	0.43973	1	3830	3830		63.306	1.1989	1	6412100			31803	2979	21982	22023	36446	36446					0.10786022231275183
KKKSEVTSR	9	Unmodified	_KKKSEVTSR_					0	0	0		ENST00000296785.7_1_5:72858805-72861416:-|nuORF	ENST00000296785.7_1_5:72858805-72861416:-|nuORF	ENST00000296785.7_1_5:72858805-72861416:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7894287109375	2	531.81693	1061.61931	1.3052	0.00069414	-3.9707	-0.0021117	-2.6655	-0.0014176	531.8122395125024	63.922	0.64318	63.967	63.619	64.262	0.045502					39	14	4	0	0	0	0.024466	1	7445	7445		31.53	12.426	1	1385100			31804	11853	21983	22024	36447	36447					0.0909621925461579
KKKSKRSK	8	Unmodified	_KKKSKRSK_					0	0	0		ENST00000237654.8_1_4:77969082-77969268:-|nuORF	ENST00000237654.8_1_4:77969082-77969268:-|nuORF	ENST00000237654.8_1_4:77969082-77969268:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3353576660156	2	495.33255	988.650548	0.11789	5.8394E-05	-2.4093	-0.0011934	-2.2914	-0.001135	495.3313364096793	106.14	0.39825	106.15	105.88	106.27	0.00015259					19	14	2	0	0	0	0.027866	1	13550	13550		1.0954	0	1	180470			31805	11262	21984	22025	36448	36448					0.15576837079379402
KKKSPYKE	8	Unmodified	_KKKSPYKE_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2973937988281	2	504.297842	1006.58113	-0.1409	-7.1056E-05	-0.60049	-0.00030283	-0.74139	-0.00037388	504.29746517008283	21.629	1.2364	21.438	21.128	22.364	-0.19072					59	25	5	0	0	0	0.97794	1	693	693		40.778	1.972	1	1707700			31806	6487	21985	22026	36449	36449					0.07810333339944009
KKKTKAVPR	9	Unmodified	_KKKTKAVPR_					0	0	0			REV__ENST00000488602.1_1_22:39925499-39925935:-|nuORF	REV__ENST00000488602.1_1_22:39925499-39925935:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3255615234375	2	528.356025	1054.6975	-0.96358	-0.00050911	0.070874	3.7446E-05	-0.89271	-0.00047167	528.3560784162886	28.208	0.40721	28.039	27.847	28.254	-0.16897					13	9	2	0	0	0	0.024541	1	1633	1633		10.265	2.575	1	66992	+		31807	27910	21986	22027	36450	36450					0.17233696630501072
KKKTKAVPR	9	Unmodified	_KKKTKAVPR_					0	0	0			REV__ENST00000488602.1_1_22:39925499-39925935:-|nuORF	REV__ENST00000488602.1_1_22:39925499-39925935:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.356025	1054.6975	-1.1496	-0.00060739	0.3804	0.00020099	-0.76918	-0.0004064	528.3561203455943	28.412	0.28057	28.167	28.001	28.281	-0.24524	0.046294	0.00023788	NaN	10.265	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54431	+		31808	27910	21986	22027							0.17233696630501072
KKKTKAVPR	9	Unmodified	_KKKTKAVPR_					0	0	0			REV__ENST00000488602.1_1_22:39925499-39925935:-|nuORF	REV__ENST00000488602.1_1_22:39925499-39925935:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.356025	1054.6975	-0.45351	-0.00023961	-0.020384	-1.077E-05	-0.47389	-0.00025038	528.3558784201228	28.308	0.32046	28.156	28.04	28.36	-0.15195	0.035581	-0.00018563	NaN	10.265	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63259	+		31809	27910	21986	22027							0.17233696630501072
KKLAMSKK	8	Unmodified	_KKLAMSKK_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.2998962402344	2	467.29933	932.584108	-0.17023	-7.9548E-05	2.8018	0.0013093	2.6316	0.0012297	467.3005379277505	92.262	1.0623	92.253	91.795	92.858	-0.0082932					73	25	4	0	0	0	1.0574	1	11656	11656		8.8223	0	1	2527500			31810	16159	21987	22028	36451	36451					0.11511885193112903
KKLAQIPP	8	Unmodified	_KKLAQIPP_					0	0	0		nc|ENSG00000072415|Q8N3R9-2|PALS1;MPP5-COX16|1|fusion;ENSG00000072415|ENST00000261681|PALS1;MPP5-COX16|2|fusion	nc|ENSG00000072415|Q8N3R9-2|PALS1	nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2352294921875	2	447.792195	893.569838	-0.41488	-0.00018578	0.66967	0.00029987	0.25479	0.00011409	447.7923734735868	37.685	0.57769	37.718	37.45	38.028	0.032269					33	15	3	0	0	0	0.027866	1	3032	3032		74.517	11.538	1	446700			31811	1480	21988	22029	36452	36452					0.1187955603646742
KKLARRGGTY	10	Unmodified	_KKLARRGGTY_					0	0	0		AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|2|1|sense	AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|2|1|sense	AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|2|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.345703125	2	575.346189	1148.67783	0.86329	0.00049669	-2.0418	-0.0011747	-1.1785	-0.00067804	575.3449012149558	97.098	1.2775	96.961	96.613	97.89	-0.13671					99	28	5	0	0	0	1.0616	1	11989	11989		37.812	2.6595	1	3730600			31812	75	21989	22030	36453	36453					0.10943320619753649
KKLARRGGTY	10	Unmodified	_KKLARRGGTY_					0	0	0		AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|2|1|sense	AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|2|1|sense	AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|2|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.345703125	2	575.346189	1148.67783	-0.38187	-0.0002197	-0.74323	-0.00042762	-1.1251	-0.00064732	575.3456405295979	97.221	1.199	97.06	96.639	97.838	-0.16106					88	26	5	0	0	0	1.1329	1	11994	11994		27.882	1.1893	1	4066100			31813	75	21989	22030	36454	36454					0.10943320619753649
KKLATSRKHSL	11	Unmodified	_KKLATSRKHSL_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.893310546875	2	634.893503	1267.77245	-0.77889	-0.00049451	-1.0276	-0.0006524	-1.8065	-0.0011469	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	0.98542	1	13007	13007		40.058	5.8856	1	1853200			31814	1807	21990	22031	36455	36455					0.14927834371087556
KKLATSRKHSL	11	Unmodified	_KKLATSRKHSL_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.8929443359375	2	634.893503	1267.77245	0.12287	7.8009E-05	-2.1001	-0.0013333	-1.9772	-0.0012553	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.013	1	12987	12987		33.922	2.3918	1	1729500			31815	1807	21990	22031	36456	36456					0.14927834371087556
KKLAVNVYN	9	Unmodified	_KKLAVNVYN_					0	0	0			REV__OR8J3|p.D296Y|1|0.32|ENSG00000167822|chr11:56136833-56136833|C/A|missense_variant	REV__OR8J3|p.D296Y|1|0.32|ENSG00000167822|chr11:56136833-56136833|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.8269653320312	2	524.811116	1047.60768	0.1416	7.4313E-05	2.9343	0.0015399	3.0759	0.0016143	524.81270330233	97.991	0.12417	98.001	97.938	98.062	0.010231					4	2	2	0	0	0	0.024381	1	12478	12478		45.952	5.1738	1	66047	+		31816	37333	21991	22032	36457	36457					0.08578022231290561
KKLCAKSA	8	Unmodified	_KKLCAKSA_					0	0	0			REV__nc|ENSG00000166946|O95273-3|CCNDBP1	REV__nc|ENSG00000166946|O95273-3|CCNDBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.91070556640625	2	424.754756	847.494958	-0.62151	-0.00026399	1.4022	0.00059558	0.78067	0.00033159	424.75538136458187	38.545	0.92156	38.462	38.149	39.071	-0.082516					51	24	4	0	0	0	0.027866	1	3284	3284		10.866	0	1	832550	+		31817	26088	21992	22033	36458	36458					0.06511050233586957
KKLCILQTE	9	Unmodified	_KKLCILQTE_					0	0	0			REV__CEP85L|p.Q569L|1|0.28|ENSG00000111860|chr6:118481818-118481818|T/A|missense_variant	REV__CEP85L|p.Q569L|1|0.28|ENSG00000111860|chr6:118481818-118481818|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2962646484375	2	538.312635	1074.61072	-0.20188	-0.00010868	-0.020495	-1.1033E-05	-0.22238	-0.00011971	538.3118350409611	65.606	0.50688	65.606	65.292	65.799	0					23	13	3	0	0	0	0.024397	1	7761	7761		39.253	8.7492	1	428850	+		31818	19294	21993	22034	36459	36459					0.07639529293760461
KKLDIGQYL	9	Unmodified	_KKLDIGQYL_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.7928466796875	2	539.318774	1076.623	0.37601	0.00020279	-1.3037	-0.0007031	-0.92767	-0.00050031	539.3188901989323	77.939	0.54851	77.697	77.49	78.038	-0.24232					21	12	3	0	0	0	0.024523	1	9333	9333		29.15	3.6994	1	105670			31819	1762	21994	22035	36460	36460					0.08774889028472899
KKLDPPKTY	9	Unmodified	_KKLDPPKTY_					0	0	0		ENST00000415664.2_21:10987833-11013471:-|nuORF	ENST00000415664.2_21:10987833-11013471:-|nuORF	ENST00000415664.2_21:10987833-11013471:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3167114257812	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.89441	1	11063	11063		32.812	7.2384	1	12792000			31820	13882	21995	22036	36461	36461					0.08222889028479585
KKLDTHCPV	9	Unmodified	_KKLDTHCPV_					0	0	0		ENST00000537388.1_1_6:13978072-13978138:+|nuORF	ENST00000537388.1_1_6:13978072-13978138:+|nuORF	ENST00000537388.1_1_6:13978072-13978138:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7667846679688	2	520.781502	1039.54845	-0.80615	-0.00041983	2.5177	0.0013112	1.7116	0.00089136	520.7827791033951	47.514	0.38092	47.514	47.43	47.811	0					18	11	2	0	0	0	0.023817	1	4809	4809		60.972	0	1	358910			31821	16373	21996	22037	36462	36462					0.030258029454444113
KKLEIKMSQT	10	Unmodified	_KKLEIKMSQT_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5423278808594	3	402.568924	1204.68494	1.9587	0.00078853	2.7851	0.0011212	4.7439	0.0019097	402.5699842763258	19.96	0.83271	19.76	19.156	19.988	-0.2001					39	16	4	0	0	0	0.03519	1	499	499		3.4087	0	1	265460	+		31822	22402	21997	22038	36463	36463					0.09078872385316572
KKLEQLLPPA	10	Unmodified	_KKLEQLLPPA_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8534545898438	2	568.855524	1135.69649	-0.25628	-0.00014578	-3.6319	-0.0020661	-3.8882	-0.0022118	568.8533241327464	101.1	1.4966	101.11	100.79	102.28	0.0090332					103	34	5	0	0	0	1.0781	1	12907	12907		35.618	1.4457	1	8744300	+		31823	26394	21998	22039	36464	36464					0.1340743747095985
KKLESELF	8	Unmodified	_KKLESELF_					0	0	0			REV__nc|ENSG00000293518|Q5YKI7-2|GGNBP1	REV__nc|ENSG00000293518|Q5YKI7-2|GGNBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2843017578125	2	497.2844	992.554247	-0.14232	-7.0772E-05	-0.4258	-0.00021174	-0.56811	-0.00028251	497.2840663211	63.124	0.94672	62.903	62.609	63.556	-0.22097					56	23	3	0	0	0	0.74904	1	7119	7119		63.306	5.495	1	958660	+		31824	37245	21999	22040	36465	36465					0.05767224728765541
KKLFDVKATG	10	Unmodified	_KKLFDVKATG_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.83056640625	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0719	1	11328	11328		36.447	13.404	1	4967900	+		31825	23388	22000	22041	36466	36466					0.10094577919790026
KKLFKKKY	8	Unmodified	_KKLFKKKY_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.28125	2	541.85787	1081.70119	-0.65018	-0.0003523	-3.0147	-0.0016336	-3.6649	-0.0019859	541.8561347145973	52.078	0.33101	51.893	51.741	52.073	-0.18404					13	8	2	0	0	0	0.027866	1	5406	5406		1.3276	0	1	140770			31826	9892	22001	22042	36467	36467					0.16360366404364868
KKLFSRHDP	9	Unmodified	_KKLFSRHDP_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8324584960938	2	564.31964	1126.62473	-0.15725	-8.8738E-05	0.11151	6.2926E-05	-0.04574	-2.5812E-05	564.8221022918779	54.063	0.18162	54.161	54.006	54.188	0.098015					7	4	2	0	0	0	0.024457	1	5815	5815		21.96	0	1	68300			31827	18861	22002	22043	36468	36468					0.06647942837071241
KKLGEFYDNN	10	Unmodified	_KKLGEFYDNN_					0	0	0			REV__PGM2|p.D232G|1|0.28|ENSG00000169299|chr4:37840235-37840235|A/G|missense_variant	REV__PGM2|p.D232G|1|0.28|ENSG00000169299|chr4:37840235-37840235|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.51971435546875	3	409.87166	1226.59315	0.41352	0.00016949	3.2417	0.0013287	3.6552	0.0014982	409.87264115612726	24.426	1.1191	24.426	24.166	25.285	0					59	25	3	0	0	0	0.03519	1	1107	1107		34.087	13.054	1	187530	+		31828	37369	22003	22044	36469	36469					-0.011080947075015501
KKLGFYSVT	9	Unmodified	_KKLGFYSVT_					0	0	0		ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.305419921875	2	521.800217	1041.58588	-1.0093	-0.00052666	-2.9122	-0.0015196	-3.9215	-0.0020462	521.7987501557463	47.551	0.7892	47.61	47.282	48.072	0.059097					68	23	5	0	0	0	0.024405	1	4666	4666		44.117	9.9443	1	12741000			31829	6932	22004	22045	36470	36470					0.0667521748271156
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(41)H		0	1	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	575.841894	1149.66923	-0.26489	-0.00015253	2.1267	0.0012247	1.8619	0.0010721	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0408	2	11500	11500;11524		40.573	12.69	1	4946400			31830	936	22005	22046	36471;36472	36471	14				0.10038630658891634
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(41)H		0	1	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8430786132812	2	575.841894	1149.66923	-0.10957	-6.3095E-05	1.9835	0.0011422	1.8739	0.0010791	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0408	2	11430	11430;11549		40.573	14.999	1	4935500			31831	936	22005	22046	36473;36474	36473	14				0.10038630658891634
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(41)H		0	1	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8428955078125	2	575.841894	1149.66923	-0.59889	-0.00034487	2.4619	0.0014177	1.8631	0.0010728	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	1.0408	1	10894	10894		40.573	6.4001	1	2151700			31832	936	22005	22046	36475	36475	14				0.10038630658891634
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(41)H		0	1	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8431396484375	2	575.841894	1149.66923	-1.2575	-0.00072414	3.1191	0.0017961	1.8616	0.001072	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0408	3	11095	11095;11119;11239		40.573	10.069	1	6251500			31833	936	22005	22046	36476;36477;36478	36476	14				0.10038630658891634
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(41)H		0	1	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8433227539062	2	575.841894	1149.66923	-0.77613	-0.00044693	2.6848	0.001546	1.9087	0.0010991	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0408	3	11109	11109;11121;11290		40.573	12.69	1	6382400			31834	936	22005	22046	36479;36480;36481	36479	14				0.10038630658891634
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(50)H		0	1	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8424072265625	2	575.841894	1149.66923	-0.05705	-3.2852E-05	1.8812	0.0010833	1.8242	0.0010504	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.96083	1	10822	10822		50.025	9.9664	1	1877500			31835	936	22005	22046	36482	36482	14				0.10038630658891634
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(41)H		0	1	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8433837890625	2	575.841894	1149.66923	0.019504	1.1231E-05	1.8334	0.0010558	1.8529	0.001067	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0408	3	11118	11118;11300;11326		40.573	11.403	1	5880000			31836	936	22005	22046	36483;36484;36485	36483	14				0.10038630658891634
KKLHGLRLK	9	Unmodified	_KKLHGLRLK_					0	0	0			REV__nc|ENSG00000198586|Q9UKI8-4|TLK1;REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF;REV__nc|ENSG00000146872|Q86UE8|TLK2;REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8402709960938	2	546.871843	1091.72913	-0.53483	-0.00029249	4.1912	0.002292	3.6564	0.0019996	546.8741915274643	99.545	0.12786	99.555	99.49	99.617	0.010231					4	2	2	0	0	0	0.024541	1	12694	12694		18.324	6.8134	1	28214	+		31837	36760;34550;28436;32029	22006	22047	36486	36486					0.18693689384440404
KKLKEVVDK	9	Unmodified	_KKLKEVVDK_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8473510742188	2	543.847699	1085.68084	0.19257	0.00010473	-0.54721	-0.0002976	-0.35464	-0.00019287	543.8473255092279	21.049	0.68781	20.853	20.582	21.27	-0.19577					39	13	4	0	0	0	0.39228	1	622	622		66.429	4.3219	1	704270			31838	9685	22007	22048	36487	36487					0.14143150953873374
KKLKFNLV	8	Unmodified	_KKLKFNLV_					0	0	0			REV__ENSG00000214046|ENST00000487416|SMIM7	REV__ENSG00000214046|ENST00000487416|SMIM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.27587890625	2	495.328945	988.643337	0.31651	0.00015677	-0.57994	-0.00028726	-0.26343	-0.00013048	495.328611037217	32.187	0.47926	31.994	31.814	32.293	-0.19261					14	10	2	0	0	0	0.027866	1	2177	2177		25.45	1.2474	1	76925	+		31839	28768	22008	22049	36488	36488					0.14856104478928955
KKLKKGKS	8	Unmodified	_KKLKKGKS_					0	0	0			REV__ENST00000480400.1_1_2:175446032-175450310:-|nuORF	REV__ENST00000480400.1_1_2:175446032-175450310:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7873840332031	2	458.818744	915.622936	-0.24933	-0.0001144	2.1126	0.00096931	1.8633	0.00085491	458.8199727486371	92.262	0.23592	92.253	92.198	92.434	-0.0082932					8	5	2	0	0	0	0.027866	1	11674	11674		18.324	7.4589	1	90766	+		31840	22241	22009	22050	36489	36489					0.1617493381913846
KKLKKLLH	8	Unmodified	_KKLKKLLH_					0	0	0		ENSG00000166153|ENST00000550587|DEPDC4;ENST00000549100.5_1_12:100631797-100646034:-|nuORF	ENSG00000166153|ENST00000550587|DEPDC4	ENSG00000166153|ENST00000550587|DEPDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2965087890625	2	504.358037	1006.70152	3.5403	0.0017856	0.79856	0.00040276	4.3388	0.0021883	504.35645525541634	18.806	0.29399	18.869	18.698	18.992	0.063307					7	5	2	0	0	0	0.027866	1	287	287		14.664	0	1	12239			31841	7511	22010	22051	36490	36490					0.1984378612422688
KKLKKQKL	8	Unmodified	_KKLKKQKL_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000461464.1_1_4:57576495-57576777:+|nuORF;ENST00000447415.1_1_1:87250865-87251147:+|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.30780029296875	2	507.363319	1012.71209	-0.26098	-0.00013241	0.11383	5.7755E-05	-0.14714	-7.4655E-05	507.36400050818753	43.417	0.39113	43.305	43.145	43.536	-0.11253					19	10	3	0	0	0	0.027866	1	3976	3976		31.955	0	1	206790			31842	1041	22011	22052	36491	36491					0.20623768778636986
KKLKKQKL	8	Unmodified	_KKLKKQKL_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000461464.1_1_4:57576495-57576777:+|nuORF;ENST00000447415.1_1_1:87250865-87251147:+|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.363319	1012.71209	-0.77145	-0.0003914	4.8733	0.0024725	4.1018	0.0020811	507.36644422536216	43.538	0.3187	43.301	43.136	43.455	-0.23736	-0.012263	-0.00016311	NaN	31.955	11	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288130			31843	1041	22011	22052							0.20623768778636986
KKLKKQLV	8	Unmodified	_KKLKKQLV_					0	0	0		nc|ENSG00000183087|Q14393-5|GAS6;nc|ENSG00000183087|Q14393-4|GAS6;ENST00000480426.5_1_13:114523839-114535869:-|nuORF;ENST00000610073.1_1_13:114523839-114538639:-|nuORF;nc|ENSG00000183087|Q14393-3|GAS6;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	nc|ENSG00000183087|Q14393-5|GAS6	nc|ENSG00000183087|Q14393-5|GAS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2422790527344	2	492.850045	983.685536	-0.10875	-5.3597E-05	0.43631	0.00021503	0.32756	0.00016144	492.85008370058904	17.645	0.24895	17.439	17.265	17.514	-0.20669					10	4	3	0	0	0	0.027866	1	179	179		4.3163	0	1	52375			31844	9197	22012	22053	36492	36492					0.19304079887319858
KKLKKSAGT	9	Unmodified	_KKLKKSAGT_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1	REV__ENSG00000124610|ENST00000244573|H1-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.8001403808594	2	480.813659	959.612765	0.38678	0.00018597	-1.1374	-0.00054688	-0.75063	-0.00036091	480.8130365149154	94.278	0.4766	94.278	93.967	94.444	0					20	11	3	0	0	0	0.024523	1	11957	11957		29.15	13.508	1	138010	+		31845	22779	22013	22054	36493	36493					0.13134326093893378
KKLKKSAGT	9	Unmodified	_KKLKKSAGT_					0	0	0			REV__ENSG00000124610|ENST00000244573|H1-1	REV__ENSG00000124610|ENST00000244573|H1-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.80072021484375	2	480.813659	959.612765	0.094951	4.5654E-05	3.544	0.001704	3.6389	0.0017496	480.8141946788062	94.413	0.41043	94.265	94.043	94.454	-0.14771					15	9	3	0	0	0	0.024477	1	11628	11628		20.947	1.587	1	120630	+		31846	22779	22013	22054	36494	36494					0.13134326093893378
KKLKNKIL	8	Unmodified	_KKLKNKIL_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2421569824219	2	492.850045	983.685536	0.81316	0.00040077	-1.1907	-0.00058685	-0.37756	-0.00018608	492.8494414014785	17.637	0.29882	17.483	17.308	17.607	-0.15403					11	5	3	0	0	0	0.027866	1	199	199		20.482	1.1219	1	40149			31847	9641	22014	22055	36495	36495					0.1930407988730849
KKLKTSISK	9	Unmodified	_KKLKTSISK_					0	0	0		ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	ENSG00000182010|ENST00000373789|RTKN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.825927734375	2	516.842416	1031.67028	-0.73147	-0.00037806	-3.7414	-0.0019337	-4.4728	-0.0023117	516.8397644491273	56.753	0.36679	56.85	56.686	57.053	0.097893					8	5	2	0	0	0	0.024457	1	6241	6241		29.15	1.2673	1	158560			31848	9090	22015	22056	36496	36496					0.15571168299470628
KKLKYFMGN	9	Unmodified	_KKLKYFMGN_					0	0	0		ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8324584960938	2	564.815344	1127.61614	0.15255	8.6164E-05	1.6937	0.00095663	1.8463	0.0010428	564.8161910532224	54.28	0.65705	54.378	54.15	54.807	0.098015					45	18	3	0	0	0	0.024535	1	5815	5815		25.45	0	1	2723200			31849	14790	22016	22057	36497	36497					0.05743252876254701
KKLKYFMGN	9	Unmodified	_KKLKYFMGN_					0	0	0		ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.815344	1127.61614	-1.0013	-0.00056552	2.7539	0.0015555	1.7527	0.00098993	564.8167762545971	54.568	1.0333	54.568	54.285	55.319	0	0.087179	0.00076955	NaN	40.573	69	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2273200			31850	14790	22016	22057							0.05743252876254701
KKLKYFMGN	9	Unmodified	_KKLKYFMGN_					0	0	0		ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.815344	1127.61614	-0.35042	-0.00019792	2.1952	0.0012399	1.8448	0.001042	564.8165059273512	54.609	0.55346	54.463	54.208	54.761	-0.14609	-0.018699	0.00013838	NaN	40.573	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1109200			31851	14790	22016	22057							0.05743252876254701
KKLKYFMGN	9	Unmodified	_KKLKYFMGN_					0	0	0		ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.815344	1127.61614	-0.0044171	-2.4949E-06	1.8169	0.0010262	1.8125	0.0010237	564.8162176467981	54.739	0.64552	54.508	54.246	54.891	-0.23087	0.027116	-0.00028891	NaN	40.573	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130100			31852	14790	22016	22057							0.05743252876254701
KKLKYFMGN	9	Unmodified	_KKLKYFMGN_					0	0	0		ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	ENST00000465687.1_1_3:88366835-88367276:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.815344	1127.61614	0.77465	0.00043754	1.1861	0.00066995	1.9608	0.0011075	564.8159161658841	54.695	0.70324	54.489	54.237	54.941	-0.20613	0.0080377	-0.0010015	NaN	40.573	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023000			31853	14790	22016	22057							0.05743252876254701
KKLLDSWF	8	Unmodified	_KKLLDSWF_					0	0	0		ENSG00000171135|ENST00000647897|JAGN1	ENSG00000171135|ENST00000647897|JAGN1	ENSG00000171135|ENST00000647897|JAGN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.79296875	2	518.794935	1035.57532	-0.21827	-0.00011324	-3.3117	-0.0017181	-3.5299	-0.0018313	518.7927964768246	55.581	0.93517	55.425	55.059	55.995	-0.15601					32	13	4	0	0	0	0.46709	1	6119	6119		88.643	5.3557	1	2079000			31854	8117	22017	22058	36498	36498					0.058952348282673483
KKLLKAGI	8	Unmodified	_KKLLKAGI_					0	0	0			REV__ENST00000358716.8_1_14:35270323-35272139:-|nuORF	REV__ENST00000358716.8_1_14:35270323-35272139:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.7553405761719	2	435.810388	869.606223	0.33931	0.00014787	0.15109	6.5848E-05	0.4904	0.00021372	435.8102799066741	22.586	0.50887	22.397	22.191	22.7	-0.18894					22	10	3	0	0	0	0.027866	1	851	851		8.8223	0	1	286870	+		31855	30860	22018	22059	36499	36499					0.16620432933166285
KKLLLFCL	8	Unmodified	_KKLLLFCL_					0	0	0		ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.3137512207031	2	489.314449	976.614345	0.036112	1.767E-05	-1.1945	-0.00058451	-1.1584	-0.00056684	489.3137714988226	94.248	0.94348	94.248	93.888	94.831	0					66	22	4	0	0	0	1.0574	1	12000	12000		9.4706	0.64823	1	1893000			31856	14307	22019	22060	36500	36500					0.1251024385829851
KKLLLFCL	8	Unmodified	_KKLLLFCL_					0	0	0		ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.3135681152344	2	489.314449	976.614345	0.10783	5.2763E-05	-1.242	-0.00060773	-1.1342	-0.00055497	489.3136970750936	94.352	1.0606	94.204	93.869	94.929	-0.14771					55	24	3	0	0	0	1.0574	1	11625	11625		9.4706	0.64823	1	908630			31857	14307	22019	22060	36501	36501					0.1251024385829851
KKLLPEMV	8	Oxidation (M)	_KKLLPEM(Oxidation (M))V_		KKLLPEM(1)V		KKLLPEM(71)V	0	0	1		nc|ENSG00000186866|Q9Y2G5-2|POFUT2;nc|ENSG00000186866|Q9Y2G5-1|POFUT2;ENSG00000186866|ENST00000349485|POFUT2	nc|ENSG00000186866|Q9Y2G5-2|POFUT2	nc|ENSG00000186866|Q9Y2G5-2|POFUT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2898864746094	2	487.291171	972.567789	-0.48048	-0.00023413	-3.5163	-0.0017135	-3.9968	-0.0019476	487.28957749521226	93.236	1.4603	93.232	92.647	94.107	-0.0042038					71	34	4	0	0	0	0.65272	1	11807	11807		71.378	13.567	1	1265900			31858	9582	22020	22061	36502	36502		394			0.08040759236359918
KKLLPMSVI	9	Unmodified	_KKLLPMSVI_					0	0	0			REV__ENST00000518389.1_3_8:33346078-33346272:+|nuORF	REV__ENST00000518389.1_3_8:33346078-33346272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.8326416015625	2	514.830463	1027.64637	3.6543	0.0018814	0.052609	2.7085E-05	3.707	0.0019085	514.8304003504121	18.093	0.54772	17.85	17.627	18.175	-0.24256					17	10	2	0	0	0	0.85329	1	244	244		35.618	1.4457	1	229670	+		31859	34232	22021	22062	36503	36503					0.13365611541439648
KKLLSLEEP	9	Unmodified	_KKLLSLEEP_					0	0	0			REV__ENSG00000073712|ENST00000341590|FERMT2	REV__ENSG00000073712|ENST00000341590|FERMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3232421875	2	528.818607	1055.62266	-0.23621	-0.00012491	2.0599	0.0010893	1.8237	0.0009644	528.8191246765933	70.082	1.421	70.095	69.349	70.77	0.012421					99	36	4	0	0	0	0.6504	1	8435	8435		49.442	7.0454	1	12808000	+		31860	20507	22022	22063	36504	36504					0.09707469308614236
KKLLVSTG	8	Unmodified	_KKLLVSTG_					0	0	0			REV__ENSG00000101003|ENST00000262460|GINS1	REV__ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2748107910156	2	423.276378	844.538203	0.046932	1.9865E-05	-3.3619	-0.001423	-3.315	-0.0014032	423.2748331715636	87.722	1.1912	87.722	87.406	88.597	0					78	28	4	0	0	0	1.0574	1	11056	11056		26.796	3.7536	1	3178300	+		31861	21175	22023	22064	36505	36505					0.1097156328253277
KKLLVSTG	8	Unmodified	_KKLLVSTG_					0	0	0			REV__ENSG00000101003|ENST00000262460|GINS1	REV__ENSG00000101003|ENST00000262460|GINS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.2752685546875	2	423.276378	844.538203	0.365	0.0001545	-3.6358	-0.0015389	-3.2708	-0.0013844	423.27473569730836	87.824	1.1914	87.789	87.405	88.596	-0.035355					72	28	4	0	0	0	1.0574	1	11031	11031		20.482	1.1219	1	3163800	+		31862	21175	22023	22064	36506	36506					0.1097156328253277
KKLNDSDHQ	9	Unmodified	_KKLNDSDHQ_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.337158203125	2	542.772719	1083.53089	-1.0394	-0.00056418	4.491	0.0024376	3.4515	0.0018734	542.7750073648889	48.843	0.60766	48.69	48.398	49.006	-0.15276					27	16	3	0	0	0	0.024261	1	4955	4955		64.207	0	1	204590			31863	7621	22024	22065	36507	36507					-0.007538210558550418
KKLNNLVVLK	10	Unmodified	_KKLNNLVVLK_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.803466796875	2	584.892441	1167.77033	-0.81	-0.00047376	1.9098	0.001117	1.0998	0.00064326	584.8940106379707	53.615	0.35025	53.418	53.238	53.588	-0.19739					20	9	3	0	0	0	0.03519	1	5601	5601		37.159	9.2769	1	429030	+		31864	28272	22025	22066	36508	36508					0.19315405633255978
KKLNQQAE	8	Unmodified	_KKLNQQAE_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2977600097656	2	479.769448	957.524344	0.54482	0.00026139	1.3782	0.00066123	1.923	0.00092262	479.76970051463616	19.246	0.24779	19.046	18.908	19.156	-0.2001					7	4	2	0	0	0	0.027866	1	399	399		50.025	0	1	16790			31865	5759	22026	22067	36509	36509					0.043882857834205424
KKLNSVACSKM	11	Unmodified	_KKLNSVACSKM_					0	0	0			REV__ENSG00000136010|ENST00000258494|ALDH1L2	REV__ENSG00000136010|ENST00000258494|ALDH1L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.5534973144531	3	403.554509	1207.6417	-0.43833	-0.00017689	-1.9233	-0.00077614	-2.3616	-0.00095303	403.55359958868013	29.424	1.3888	29.275	28.912	30.301	-0.14952					105	32	6	0	0	0	0.98625	1	1786	1786		39.873	1.1195	1	3316200	+		31866	23611	22027	22068	36510	36510					0.046183593363366526
KKLQRRPPN	9	Unmodified	_KKLQRRPPN_					0	0	0			REV__nc|ENSG00000101109|Q13043-2|STK4	REV__nc|ENSG00000101109|Q13043-2|STK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.853515625	2	568.854181	1135.69381	-0.46285	-0.00026329	-1.0673	-0.00060712	-1.5301	-0.00087041	568.8534480412821	101.18	1.7422	101.17	100.85	102.59	-0.0054398					103	39	5	0	0	0	0.80658	1	12881	12881		38.806	0.99462	1	8581000	+		31867	21184	22028	22069	36511	36511					0.1313902685665198
KKLRKGTP	8	Unmodified	_KKLRKGTP_					0	0	0			REV__nc|ENSG00000100473|O43405-2|COCH	REV__nc|ENSG00000100473|O43405-2|COCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2642822265625	2	464.308544	926.602535	0.68978	0.00032027	-2.0042	-0.00093057	-1.3144	-0.0006103	464.3075175016195	58.26	0.11158	58.351	58.26	58.371	0.091217					4	2	2	0	0	0	0.027866	1	6512	6512		29.15	4.9468	1	73241	+		31868	21122	22029	22070	36512	36512					0.13629763159326558
KKLRNLTN	8	Unmodified	_KKLRNLTN_					0	0	0		ENSG00000101292|ENST00000678254|PROKR2;ENSG00000169618|ENST00000303786|PROKR1	ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2786560058594	2	493.808908	985.603263	1.1182	0.0005522	-1.6982	-0.00083858	-0.57993	-0.00028638	493.8077105803095	20.021	0.38506	19.821	19.603	19.988	-0.2001					13	7	3	0	0	0	0.027866	1	505	505		35.618	1.4457	1	27705			31869	2304	22030	22071	36513	36513					0.10988557808366295
KKLRSKPEHYR	11	Unmodified	_KKLRSKPEHYR_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2829284667969	3	481.284398	1440.83137	0.24413	0.0001175	-2.2331	-0.0010748	-1.989	-0.00095726	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0371	1	13004	13004		28.577	5.1988	1	1053600			31870	8031	22031	22072	36514	36514					0.12858310665387762
KKLRSKPEHYR	11	Unmodified	_KKLRSKPEHYR_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.282958984375	3	481.284398	1440.83137	-0.010732	-5.1652E-06	-1.8207	-0.00087627	-1.8314	-0.00088144	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.0022	1	12915	12915		36.318	3.5671	1	1064100			31871	8031	22031	22072	36515	36515					0.12858310665387762
KKLSFEEV	8	Unmodified	_KKLSFEEV_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.79803466796875	2	490.276575	978.538597	0.95838	0.00046987	-3.4875	-0.0017099	-2.5292	-0.00124	490.27481660837213	19.613	0.54536	19.412	19.206	19.751	-0.2001					17	10	2	0	0	0	0.027866	1	454	454		38.806	1.647	1	38867			31872	2546	22032	22073	36516	36516					0.04846938211710494
KKLSHKKSD	9	Unmodified	_KKLSHKKSD_					0	0	0			REV__ENSG00000185955|ENST00000332375|SPACDR	REV__ENSG00000185955|ENST00000332375|SPACDR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.8145141601562	2	535.819473	1069.62439	0.16325	8.7474E-05	-3.1117	-0.0016673	-2.9484	-0.0015798	535.8177195705961	97.973	0.54247	97.97	97.724	98.267	-0.0020752					28	12	3	0	0	0	0.96906	1	12432	12432		26.693	1.1189	1	110490	+		31873	27814	22033	22074	36517	36517					0.09236523117237994
KKLSHKKSD	9	Unmodified	_KKLSHKKSD_					0	0	0			REV__ENSG00000185955|ENST00000332375|SPACDR	REV__ENSG00000185955|ENST00000332375|SPACDR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	535.819473	1069.62439	-0.45371	-0.00024311	-1.9426	-0.0010409	-2.3963	-0.001284	535.8181289021057	97.867	0.68063	97.867	97.594	98.275	0	-0.047391	0.0010071	NaN	26.693	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103830	+		31874	27814	22033	22074							0.09236523117237994
KKLSHKKSD	9	Unmodified	_KKLSHKKSD_					0	0	0			REV__ENSG00000185955|ENST00000332375|SPACDR	REV__ENSG00000185955|ENST00000332375|SPACDR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.819473	1069.62439	-0.058207	-3.1188E-05	-2.8656	-0.0015354	-2.9238	-0.0015666	535.8177158528374	97.915	0.59472	97.926	97.596	98.19	0.010231	0.010697	1.7913E-05	NaN	26.693	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137740	+		31875	27814	22033	22074							0.09236523117237994
KKLSHKKSD	9	Unmodified	_KKLSHKKSD_					0	0	0			REV__ENSG00000185955|ENST00000332375|SPACDR	REV__ENSG00000185955|ENST00000332375|SPACDR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	535.819473	1069.62439	0.16325	8.7474E-05	-3.1117	-0.0016673	-2.9484	-0.0015798	535.8177195705961	97.973	0.54247	97.97	97.724	98.267	-0.0020752	0.055602	-0.00024581	NaN	26.693	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110490	+		31876	27814	22033	22074							0.09236523117237994
KKLSHKKSD	9	Unmodified	_KKLSHKKSD_					0	0	0			REV__ENSG00000185955|ENST00000332375|SPACDR	REV__ENSG00000185955|ENST00000332375|SPACDR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.819473	1069.62439	0.51792	0.00027751	-4.0378	-0.0021635	-3.5199	-0.001886	535.8174041170497	98.032	0.49856	97.896	97.605	98.104	-0.13626	-0.018908	-0.0012383	NaN	26.693	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150400	+		31877	27814	22033	22074							0.09236523117237994
KKLSRTQAS	9	Unmodified	_KKLSRTQAS_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80328369140625	2	509.803823	1017.59309	0.28678	0.0001462	-0.54644	-0.00027858	-0.25966	-0.00013238	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.93097	1	10490	10490		30.318	1.1682	1	3746700			31878	1292	22034	22075	36518	36518					0.08499950083137264
KKLSRTQAS	9	Unmodified	_KKLSRTQAS_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.80364990234375	2	509.803823	1017.59309	0.56391	0.00028748	-0.9228	-0.00047045	-0.35889	-0.00018296	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.85329	1	10542	10542		35.618	5.3006	1	3699900			31879	1292	22034	22075	36519	36519					0.08499950083137264
KKLSVVLL	8	Unmodified	_KKLSVVLL_					0	0	0			REV__ENSG00000162777|ENST00000357640|DENND2D	REV__ENSG00000162777|ENST00000357640|DENND2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.28662109375	2	450.318046	898.621539	0.28771	0.00012956	-0.19495	-8.7789E-05	0.092763	4.1773E-05	450.31783452002895	52.649	0.41095	52.74	52.565	52.976	0.091938					15	10	2	0	0	0	0.027866	1	5552	5552		24.203	12.692	1	91633	+		31880	25492	22035	22076	36520	36520					0.1681729973038273
KKLSVVLL	8	Unmodified	_KKLSVVLL_					0	0	0			REV__ENSG00000162777|ENST00000357640|DENND2D	REV__ENSG00000162777|ENST00000357640|DENND2D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.318046	898.621539	-0.11232	-5.0578E-05	-0.33394	-0.00015038	-0.44626	-0.00020096	450.31787136821663	52.8	0.30162	52.8	52.673	52.974	0	0.018325	-0.00011537	NaN	24.203	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82190	+		31881	25492	22035	22076							0.1681729973038273
KKLSVVLL	8	Unmodified	_KKLSVVLL_					0	0	0			REV__ENSG00000162777|ENST00000357640|DENND2D	REV__ENSG00000162777|ENST00000357640|DENND2D	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.318046	898.621539	0.11552	5.2019E-05	0.046236	2.0821E-05	0.16175	7.284E-05	450.3181014192747	52.951	0.34146	52.804	52.607	52.948	-0.14723	0.022412	0.00022703	NaN	24.203	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63178	+		31882	25492	22035	22076							0.1681729973038273
KKLTPTLFD	9	Unmodified	_KKLTPTLFD_					0	0	0			REV__ENST00000418664.2_2_6:7584723-7584783:+|nuORF	REV__ENST00000418664.2_2_6:7584723-7584783:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8185424804688	2	531.813325	1061.6121	0.68447	0.00036401	2.341	0.001245	3.0255	0.001609	532.3146589196082	98.579	0.8822	98.455	97.988	98.87	-0.12413					26	20	2	0	0	0	0.96322	1	12218	12218		27.882	3.3631	1	80421	+		31883	32123	22036	22077	36521	36521					0.08375486654199449
KKLTRYLN	8	Unmodified	_KKLTRYLN_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;ENST00000490115.5_1_3:48586091-48594264:-|nuORF;PFKFB4|p.F191Efs*4|1|0.31|ENSG00000114268|chr3:48538556-48538560|TGAAG/-|frameshift_variant;ENST00000496767.5_1_3:48586091-48599213:-|nuORF;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000123836|O60825-2|PFKFB2;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7836303710938	2	518.319109	1034.62366	-0.77796	-0.00040323	-0.15322	-7.9415E-05	-0.93118	-0.00048265	518.3188631978785	33.718	1.4544	33.718	33.174	34.629	0					50	38	2	0	0	0	0.027866	1	2535	2535		27.882	7.8855	1	138290			31884	3351;4000;8050	22037	22078	36522	36522					0.10773728468188892
KKLWSLPY	8	Unmodified	_KKLWSLPY_					0	0	0		ENST00000422843.7_1_5:156638304-156665140:+|nuORF;ENST00000519759.1_1_5:156649807-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000422843.7_1_5:156638304-156665140:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.32275390625	2	517.805303	1033.59605	-0.21552	-0.0001116	0.45304	0.00023459	0.23752	0.00012299	517.805241264537	73.367	0.5509	73.177	72.927	73.478	-0.19026					23	13	2	0	0	0	0.027866	1	8580	8580		20.482	6.7065	1	183770			31885	14014	22038	22079	36523	36523					0.08059825207942595
KKLYIVAY	8	Unmodified	_KKLYIVAY_					0	0	0			REV__ENSG00000079335|ENST00000336454|CDC14A	REV__ENSG00000079335|ENST00000336454|CDC14A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.23529052734375	2	499.307678	996.600803	0.16522	8.2496E-05	-4.009	-0.0020017	-3.8437	-0.0019192	499.3055483837951	57.406	0.46888	57.204	56.926	57.395	-0.20208					19	12	2	0	0	0	0.027866	1	6222	6222		46.766	27.406	1	193990	+		31886	20634	22039	22080	36524	36524					0.10236709350704132
KKMEKVGL	8	Unmodified	_KKMEKVGL_					0	0	0			REV__nc|ENSG00000086065|Q9NZZ3-2|CHMP5	REV__nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.7816162109375	2	466.783513	931.552473	-0.57128	-0.00026666	-3.4967	-0.0016322	-4.068	-0.0018989	466.78183335450836	29.555	1.1042	29.382	29.025	30.13	-0.17258					67	25	4	0	0	0	0.2917	1	1799	1799		115.46	0.87315	1	5121500	+		31887	20766	22040	22081	36525	36525					0.08395892439170893
KKMIQSPV	8	Unmodified	_KKMIQSPV_					0	0	0			REV__ENST00000302763.11_1_5:138240038-138240083:+|nuORF	REV__ENST00000302763.11_1_5:138240038-138240083:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7776184082031	2	465.775688	929.536823	0.37671	0.00017546	3.7484	0.0017459	4.1251	0.0019214	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.043	1	9777	9777		30.504	3.8107	1	1283800	+		31888	30083	22041	22082	36526	36526					0.06923605922122533
KKMKIEAL	8	Unmodified	_KKMKIEAL_					0	0	0			REV__CRYZL1|p.M53I|1|0.2|ENSG00000205758|chr21:33622054-33622054|C/T|missense_variant	REV__CRYZL1|p.M53I|1|0.2|ENSG00000205758|chr21:33622054-33622054|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.80096435546875	2	480.799163	959.583773	0.37808	0.00018178	2.6419	0.0012702	3.02	0.001452	480.80031956512425	94.257	2.0083	94.257	93.77	95.778	0					166	47	6	0	0	0	1.043	1	12053	12053		30.504	0	1	23477000	+		31889	19617	22042	22083	36527	36527					0.10236465473246881
KKMKIEAL	8	Unmodified	_KKMKIEAL_					0	0	0			REV__CRYZL1|p.M53I|1|0.2|ENSG00000205758|chr21:33622054-33622054|C/T|missense_variant	REV__CRYZL1|p.M53I|1|0.2|ENSG00000205758|chr21:33622054-33622054|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.80133056640625	2	480.799163	959.583773	-0.09375	-4.5075E-05	3.1194	0.0014998	3.0257	0.0014547	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	1.0133	1	12024	12024		35.201	0	1	24672000	+		31890	19617	22042	22083	36528	36528					0.10236465473246881
KKMKMRRRRKI	11	Unmodified	_KKMKMRRRRKI_					0	0	0		ENST00000559471.5_1_15:49284721-49284799:-|nuORF	ENST00000559471.5_1_15:49284721-49284799:-|nuORF	ENST00000559471.5_1_15:49284721-49284799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.78948974609375	3	510.993908	1529.95989	0.2967	0.00015161	0.57165	0.00029211	0.86836	0.00044372	511.3290058855053	85.707	0.3765	85.512	85.301	85.678	-0.19508					10	8	2	0	0	0	0.024901	1	10393	10393		1.523	0.10423	1	54008			31891	16781	22043	22084	36529	36529					0.2161125110312696
KKMKPPKIPF	10	Unmodified	_KKMKPPKIPF_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.3765869140625	2	607.378112	1212.74167	0.78357	0.00047592	-2.1422	-0.0013012	-1.3587	-0.00082523	607.3766907188141	97.758	0.66309	97.634	97.285	97.948	-0.12368					27	15	2	0	0	0	1.1329	1	12093	12093		27.882	1.1893	1	325640			31892	4997	22044	22085	36530	36530					0.14380964732481516
KKMKSKKK	8	Unmodified	_KKMKSKKK_					0	0	0		ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7972717285156	2	503.333704	1004.65286	1.0033	0.00050498	4.053	0.00204	5.0563	0.002545	503.3353267157944	19.632	0.24752	19.399	19.226	19.473	-0.23345					6	4	2	0	0	0	0.027866	1	418	418		8.2313	0	1	21268			31893	2517	22045	22086	36531	36531					0.15071549492824943
KKMNKAPKP	9	Unmodified	_KKMNKAPKP_					0	0	0			REV__ENST00000419303.5_1_22:22348995-22398182:-|nuORF	REV__ENST00000419303.5_1_22:22348995-22398182:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2998046875	2	521.315512	1040.61647	-0.80452	-0.00041941	1.2759	0.00066517	0.47143	0.00024576	521.8159118398149	68.833	0.64557	68.833	68.52	69.166	0					37	16	3	0	0	0	0.024506	1	8305	8305		16.473	0	1	363070	+		31894	32138	22046	22087	36532	36532					0.09778672596098659
KKNGSFKRKG	10	Unmodified	_KKNGSFKRKG_					0	0	0		ENSG00000163632|ENST00000295896|C3orf49	ENSG00000163632|ENST00000295896|C3orf49	ENSG00000163632|ENST00000295896|C3orf49	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.3455810546875	2	575.346189	1148.67783	0.72586	0.00041762	-1.7906	-0.0010302	-1.0648	-0.00061261	575.345019698839	97.117	1.277	96.993	96.572	97.849	-0.12368					101	28	5	0	0	0	1.1333	1	11993	11993		28.081	0	1	3498400			31895	7119	22047	22088	36533	36533					0.10943320619730912
KKNKIQAEP	9	Unmodified	_KKNKIQAEP_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.311279296875	2	528.314023	1054.61349	-1.1946	-0.00063114	1.0035	0.00053014	-0.19117	-0.000101	528.3144935059071	60.885	0.39676	60.709	60.559	60.955	-0.1761					15	9	2	0	0	0	0.024541	1	6781	6781		23.042	0	1	111920			31896	8797	22048	22089	36534	36534					0.08837120742941806
KKNNKKAS	8	Unmodified	_KKNNKKAS_					0	0	0			REV__EIF4B|p.K8N|1|0.26|ENSG00000063046|chr12:53016483-53016483|G/C|missense_variant	REV__EIF4B|p.K8N|1|0.26|ENSG00000063046|chr12:53016483-53016483|G/C|missense_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	459.2782897949219	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.11	1	91.987	91.487	92.487	-0.12242								0	0	0	0.83467	1	11316	11316		31.955	0	1		+		31897	19739	22049	22090	36535	36535					0.08380295882943756
KKNNLRDWLRV	11	Unmodified	_KKNNLRDWLRV_					0	0	0		ENSG00000116251|ENST00000234875|RPL22;ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000116251|ENST00000234875|RPL22	ENSG00000116251|ENST00000234875|RPL22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.28326416015625	3	481.284398	1440.83137	0.3888	0.00018713	-2.2325	-0.0010745	-1.8437	-0.00088733	481.28322550437986	101.41	2.0202	101.23	100.66	102.68	-0.17178					149	48	5	0	0	0	1.0592	1	12551	12551		22.562	2.2466	1	742900			31898	3538	22050	22091	36536	36536					0.12858310665387762
KKNNTEKAI	9	Unmodified	_KKNNTEKAI_					0	0	0			REV__nc|ENSG00000089685|O15392|BIRC5	REV__nc|ENSG00000089685|O15392|BIRC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.80003	1	10692	10692		39.253	0.44669	1	14210000	+		31899	20859	22051	22092	36537	36537					0.07224530363282611
KKNPVLGICL	10	Unmodified	_KKNPVLGICL_					0	0	0			REV__nc|ENSG00000003400|Q92851-6|CASP10	REV__nc|ENSG00000003400|Q92851-6|CASP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8314208984375	2	542.830995	1083.64744	-0.055728	-3.0251E-05	4.3657	0.0023699	4.31	0.0023396	542.8330400157195	71.524	0.26476	71.524	71.377	71.642	0					9	6	2	0	0	0	0.03519	1	8661	8661		35.618	0	1	60782	+		31900	19771	22052	22093	36538	36538					0.10895825910324675
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3291015625	2	567.330539	1132.64652	-1.643	-0.00093215	0.013669	7.7548E-06	-1.6294	-0.00092439	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.87448	1	11712	11712		34.173	0.25091	1	14057000	+		31901	26716	22053	22094	36539	36539					0.08550747585650242
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3287353515625	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	0.56934	1	11658	11658		54.776	3.5836	1	13648000	+		31902	26716	22053	22094	36540	36540					0.08550747585650242
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3292236328125	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.98697	1	11124	11124		23.042	1.0826	1	18337000	+		31903	26716	22053	22094	36541	36541					0.08550747585650242
KKNQVSILNK	10	Unmodified	_KKNQVSILNK_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;ENST00000574518.1_1_17:7674005-7689702:+|nuORF;DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.3609619140625	2	586.361505	1170.70846	3.2598	0.0019114	-3.186	-0.0018682	0.073776	4.3259E-05	586.3593940465256	17.995	0.39635	17.752	17.528	17.924	-0.24256					18	7	4	0	0	0	1.0002	1	221	221		45.972	0	1	143950			31904	9292	22054	22095	36542	36542					0.1299305421414374
KKNRLSAN	8	Unmodified	_KKNRLSAN_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B;ENST00000577800.1_1_18:66513601-66564710:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7773132324219	2	465.777608	929.540663	-0.18378	-8.5601E-05	-0.68614	-0.00031959	-0.86992	-0.00040519	465.7770589296706	81.53	4.4485	81.399	79.15	83.599	-0.13075					270	106	3	0	0	0	0.85395	1	10129	10129		54.776	12.38	1	1253000			31905	6147	22055	22096	36543	36543					0.07307411740168845
KKNRLSAN	8	Unmodified	_KKNRLSAN_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B;ENST00000577800.1_1_18:66513601-66564710:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77734375	2	465.777608	929.540663	-0.52618	-0.00024508	0.34984	0.00016295	-0.17634	-8.2136E-05	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.85395	1	9807	9807		54.776	1.4249	1	1029300			31906	6147	22055	22096	36544	36544					0.07307411740168845
KKNRVLVM	8	Unmodified	_KKNRVLVM_					0	0	0			REV__ENST00000572418.1_1_17:3807220-3819678:-|nuORF	REV__ENST00000572418.1_1_17:3807220-3819678:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7846374511719	2	494.310229	986.605906	0.30815	0.00015232	-4.0325	-0.0019933	-3.7244	-0.001841	494.30833212800763	56.704	0.65463	56.502	56.092	56.747	-0.20209					23	16	2	0	0	0	0.027866	1	6179	6179		19.36	0	1	214490	+		31907	21732	22056	22097	36545	36545					0.11206689941684544
KKNSFLES	8	Unmodified	_KKNSFLES_					0	0	0			REV__ENST00000570269.2_3_3:114047125-114047275:-|nuORF	REV__ENST00000570269.2_3_3:114047125-114047275:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7579040527344	2	476.758549	951.502546	0.30524	0.00014553	-1.5647	-0.00074597	-1.2594	-0.00060044	476.75785307514684	100.14	1.3858	100.15	99.784	101.17	0.010117					55	34	2	0	0	0	1.0516	1	12808	12808		29.15	2.4566	1	272260	+		31908	35390	22057	22098	36546	36546					0.0248548103485291
KKNSQVTF	8	Unmodified	_KKNSQVTF_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.26654052734375	2	476.266542	950.51853	0.23064	0.00010985	-0.87967	-0.00041896	-0.64903	-0.00030911	476.2661721293344	31.667	1.3792	31.426	31.073	32.452	-0.24109					107	33	5	0	0	0	0.46709	1	2116	2116		88.643	3.2834	1	26303000			31909	7234	22058	22099	36547	36547					0.04129187271769297
KKNSRKVD	8	Unmodified	_KKNSRKVD_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79083251953125	2	487.790715	973.566878	0.29152	0.0001422	-0.5178	-0.00025258	-0.22629	-0.00011038	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	1.0338	1	10428	10428		31.955	1.4512	1	2091900	+		31910	22220	22059	22100	36548	36548					0.07903680911658739
KKNVGIIGSTP	11	Unmodified	_KKNVGIIGSTP_					0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.3243408203125	2	557.334956	1112.65536	-0.83317	-0.00046435	0.053402	2.9763E-05	-0.77977	-0.00043459	557.3348208646847	38.952	0.83774	38.976	38.688	39.526	0.023727					40	22	2	0	0	0	0.02475	1	3227	3227		51.193	26.674	1	610190	+		31911	19502	22060	22101	36549	36549					0.10353676431486747
KKPCFTLKL	9	Unmodified	_KKPCFTLKL_					0	0	0			REV__ENSG00000143107|ENST00000370017|FNDC7	REV__ENSG00000143107|ENST00000370017|FNDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.275146484375	2	539.328088	1076.64162	-0.19238	-0.00010375	3.4608	0.0018665	3.2685	0.0017628	539.3303377137072	58.311	0.47484	58.311	58.056	58.531	0					16	12	2	0	0	0	0.024456	1	6616	6616		51.193	35.551	1	140500	+		31912	24200	22061	22102	36550	36550					0.10636727398673429
KKPDPKKR	8	Unmodified	_KKPDPKKR_					0	0	0			REV__nc|ENSG00000134602|Q9P289-2|STK26	REV__nc|ENSG00000134602|Q9P289-2|STK26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.285888671875	2	498.819276	995.623999	-0.20918	-0.00010434	-0.20548	-0.0001025	-0.41465	-0.00020684	498.8190732403966	17.492	0.19861	17.285	17.166	17.364	-0.20669					5	3	2	0	0	0	0.027866	1	168	168		7.6903	0	1	18718	+		31913	23466	22062	22103	36551	36551					0.1260114818803686
KKPEYDLE	8	Unmodified	_KKPEYDLE_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2632141113281	2	511.263665	1020.51278	-0.69587	-0.00035577	0.89648	0.00045834	0.20061	0.00010257	511.264057219153	80.985	3.0657	80.985	80.626	83.692	0					179	73	5	0	0	0	1.0239	1	10055	10055		33.516	3.0119	1	8427000			31914	3501	22063	22104	36552	36552					0.0033404396941705272
KKPFIKQQTF	10	Unmodified	_KKPFIKQQTF_					0	0	0		TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.2377624511719	3	422.251924	1263.73394	-0.74927	-0.00031638	1.1666	0.00049262	0.41737	0.00017624	422.2525775434514	32.855	0.3352	32.855	32.606	32.941	0					20	8	4	0	0	0	0.03519	1	2315	2315		32.751	10.171	1	103140			31915	38054	22064	22105	36553	36553					0.11262528736574495
KKPKLESK	8	Unmodified	_KKPKLESK_					0	0	0		ENST00000535919.1_1_11:95512769-95516347:-|nuORF;nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2977600097656	2	479.30821	956.601866	0.4644	0.00022259	-0.27526	-0.00013193	0.18914	9.0655E-05	479.3077743869699	19.083	0.39477	18.88	18.708	19.102	-0.20371					11	7	2	0	0	0	0.027866	1	399	399		45.952	0	1	61935			31916	1612	22065	22106	36554	36554					0.12182923719615246
KKPKLESK	8	Unmodified	_KKPKLESK_					0	0	0		ENST00000535919.1_1_11:95512769-95516347:-|nuORF;nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29766845703125	2	479.30821	956.601866	2.3535	0.0011281	-2.1636	-0.001037	0.18992	9.1029E-05	479.3069581028541	19.038	0.39492	18.805	18.632	19.027	-0.23345					10	7	2	0	0	0	0.027866	1	375	375		51.335	0	1	79461			31917	1612	22065	22106	36555	36555					0.12182923719615246
KKPKVLPLPVQ	11	Unmodified	_KKPKVLPLPVQ_					0	0	0		ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	ENST00000367265.7_1_1:202777435-202777672:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.4168090820312	2	623.915916	1245.81728	0.93975	0.00058632	-0.12137	-7.5724E-05	0.81838	0.0005106	623.9157293580129	107.7	0.30437	107.7	107.55	107.85	0					23	15	2	0	0	0	1.1078	1	13820	13820		9.1829	1.3784	1	2190900			31918	12851	22066	22107	36556	36556					0.20420265184407072
KKPLKVIFD	9	Unmodified	_KKPLKVIFD_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2748413085938	2	544.347335	1086.68012	-1.1064	-0.00060226	0.90286	0.00049147	-0.20353	-0.00011079	544.3475523511485	77.987	1.246	78.003	77.739	78.985	0.015907					49	29	3	0	0	0	0.024381	1	9538	9538		37.159	9.2769	1	202510			31919	5257	22067	22108	36557	36557					0.1402435630486707
KKPSITRN	8	Unmodified	_KKPSITRN_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.28778076171875	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	1.0574	1	12002	12002		27.882	1.0861	1	51888000	+		31920	28198	22068	22109	36558	36558					0.08748582399982752
KKPSITRN	8	Unmodified	_KKPSITRN_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.287841796875	2	472.287808	942.561064	-0.48925	-0.00023107	0.00055468	2.6197E-07	-0.4887	-0.00023081	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.0574	1	11587	11587		27.882	1.1893	1	45907000	+		31921	28198	22068	22109	36559	36559					0.08748582399982752
KKPSRPCMF	9	Unmodified	_KKPSRPCMF_					0	0	0			REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF	REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8112182617188	2	547.285897	1092.55724	-1.3634	-0.00074615	-3.0539	-0.0016713	-4.4172	-0.0024175	547.2865202856767	46.536	0.63884	46.383	46.098	46.736	-0.15301					33	17	3	0	0	0	0.024487	1	4627	4627		24.203	0	1	368620	+		31922	33248	22069	22110	36560	36560					0.014664533102632049
KKPSRPCMF	9	Unmodified	_KKPSRPCMF_					0	0	0			REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF	REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	547.285897	1092.55724	-0.1636	-8.9534E-05	3.29	0.0018006	3.1264	0.001711	547.7893363049352	46.816	0.17962	46.546	46.415	46.595	-0.26939	0.059796	0.0028	NaN	47.916	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207740	+		31923	33248	22069	22110							0.014664533102632049
KKQCDPILT	9	Unmodified	_KKQCDPILT_					0	0	0			REV__ENSG00000104320|ENST00000265433|NBN	REV__ENSG00000104320|ENST00000265433|NBN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8187255859375	2	523.289159	1044.56377	-0.27026	-0.00014142	-1.7166	-0.00089829	-1.9869	-0.0010397	523.7900974448903	54.701	1.0424	54.55	53.852	54.894	-0.15036					49	29	3	0	0	0	0.024412	1	5926	5926		17.365	0	1	272440	+		31924	21432	22070	22111	36561	36561					0.043266697426361134
KKQEAGFAL	9	Unmodified	_KKQEAGFAL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2628479003906	2	496.282192	990.549831	-0.53651	-0.00026626	0.37968	0.00018843	-0.15684	-7.7836E-05	496.2823121781795	48.957	0.3597	48.678	48.538	48.898	-0.27977					16	9	2	0	0	0	0.024405	1	4894	4894		20.947	3.582	1	205510			31925	1175	22071	22112	36562	36562					0.054177603058633395
KKQEAGFAL	9	Unmodified	_KKQEAGFAL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.282192	990.549831	-0.14759	-7.3245E-05	0.79458	0.00039434	0.647	0.00032109	496.28232162181166	48.498	0.7616	48.498	48.243	49.005	0	-0.064302	0.00012446	NaN	20.947	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247000			31926	1175	22071	22112							0.054177603058633395
KKQEAGFAL	9	Unmodified	_KKQEAGFAL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.282192	990.549831	-0.18202	-9.0332E-05	0.91078	0.000452	0.72876	0.00036167	496.2823843379574	48.337	0.53625	48.404	48.228	48.764	0.066795	-0.15861	0.00023979	NaN	20.947	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204010			31927	1175	22071	22112							0.054177603058633395
KKQEITSN	8	Unmodified	_KKQEITSN_					0	0	0		nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENSG00000006459|ENST00000397560|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	nc|ENSG00000006459|Q6ZMT4-2|KDM7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.2620849609375	2	474.261456	946.50836	-0.36574	-0.00017345	-0.7546	-0.00035788	-1.1203	-0.00053133	474.2608997440374	25.876	0.68532	25.64	25.262	25.948	-0.23603					40	16	4	0	0	0	0.93274	1	1274	1274		47.916	0	1	596170			31928	792	22072	22113	36563	36563					0.032965795465202063
KKQGEGVPDL	10	Unmodified	_KKQGEGVPDL_					0	0	0		ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000100614|P35813-3|PPM1A	ENSG00000100614|ENST00000395076|PPM1A	ENSG00000100614|ENST00000395076|PPM1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7979736328125	2	535.795663	1069.57677	-0.29516	-0.00015815	4.1968	0.0022486	3.9016	0.0020905	535.7977271491579	89.167	1.6159	89.183	88.753	90.368	0.015907					83	38	4	0	0	0	0.65479	1	11190	11190		70.816	1.1886	1	2684600			31929	2230	22073	22114	36564	36564					0.04476824126390966
KKQKKKHS	8	Unmodified	_KKQKKKHS_					0	0	0			REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.305419921875	2	506.324725	1010.6349	0.01336	6.7647E-06	0.43369	0.00021959	0.44705	0.00022635	506.3248489987013	41.296	0.73536	41.319	40.934	41.67	0.023003					30	20	2	0	0	0	0.027866	1	3678	3678		49.442	8.8689	1	177060	+		31930	24737	22074	22115	36565	36565					0.13000550562321678
KKQKKSLK	8	Unmodified	_KKQKKSLK_					0	0	0		ENST00000399580.2_1_X:83004518-83004785:-|nuORF	ENST00000399580.2_1_X:83004518-83004785:-|nuORF	ENST00000399580.2_1_X:83004518-83004785:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2894592285156	2	494.337301	986.66005	0.42555	0.00021036	-1.2679	-0.00062675	-0.84232	-0.00041639	494.33657707800944	61.433	0.46554	61.433	61.216	61.682	0					15	11	2	0	0	0	0.027866	1	7081	7081		24.203	0	1	331330			31931	13649	22075	22116	36566	36566					0.16618605364885752
KKQKVLLL	8	Unmodified	_KKQKVLLL_					0	0	0			REV__ENSG00000183837|ENST00000593810|PNMA3	REV__ENSG00000183837|ENST00000593810|PNMA3	MSMS	OPSCC_39_ClassI_Rep-1	1	485.3470153808594	2	485.344595	968.674637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.03	1	110.03	109.53	110.53	0								0	0	0	1.3817	1	13988	13988		4.6817	0	1		+		31932	27614	22076	22117	36567	36567					0.18904677513046408
KKQNAPKV	8	Unmodified	_KKQNAPKV_					0	0	0			REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	REV__nc|ENSG00000180336|A2RUB1-5|MEIOC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7509460449219	2	456.784902	911.55525	-0.70492	-0.000322	1.2215	0.00055794	0.51653	0.00023594	456.7852601153652	30.176	0.54129	30.25	29.92	30.461	0.074314					21	12	2	0	0	0	0.027866	1	1837	1837		25.45	4.9683	1	121400	+		31933	27333	22077	22118	36568	36568					0.09593483888318133
KKQNLKIL	8	Unmodified	_KKQNLKIL_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.81549072265625	2	492.831852	983.649151	-0.81916	-0.00040371	1.4062	0.00069303	0.58705	0.00028932	492.83204548612895	21.013	0.39622	20.8	20.624	21.02	-0.2128					15	7	3	0	0	0	0.027866	1	585	585		25.45	0	1	44435	+		31934	21154	22078	22119	36569	36569					0.1566720299060762
KKQQLVSATFQ	11	Unmodified	_KKQQLVSATFQ_					0	0	0			REV__ENSG00000121440|ENST00000263666|PDZRN3	REV__ENSG00000121440|ENST00000263666|PDZRN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.57928466796875	3	426.578588	1276.71394	0.33053	0.000141	0.70578	0.00030107	1.0363	0.00044207	426.5788493975335	36.177	1.6478	35.96	35.507	37.155	-0.21661					128	43	4	0	0	0	0.99129	1	2826	2826		28.384	4.152	1	5257800	+		31935	22595	22079	22120	36570	36570					0.08664733005934977
KKQRRQEQL	9	Unmodified	_KKQRRQEQL_					0	0	0			REV__nc|ENSG00000166049|Q8IV76-2|PASD1	REV__nc|ENSG00000166049|Q8IV76-2|PASD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	405.242311	1212.7051	0.55798	0.00022612	-0.3084	-0.00012498	0.24958	0.00010114	405.24343628418535	32.062	0.12747	31.826	31.74	31.867	-0.23667					4	2	2	0	0	0	0.024456	1	2177	2177		7.0187	0	1	15301	+		31936	25963	22080	22121	36571	36571					0.10725804160142616
KKQSKPVTT	9	Unmodified	_KKQSKPVTT_					0	0	0		ENST00000447985.1_1_21:30260983-30261475:-|nuORF;HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENST00000447985.1_1_21:30260983-30261475:-|nuORF;HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2828063964844	2	508.808574	1015.60259	0.06017	3.0615E-05	0.288	0.00014654	0.34817	0.00017715	509.3099460931863	20.487	0.68683	20.32	20.049	20.736	-0.16774					25	13	4	0	0	0	0.024447	1	530	530		32.812	0	1	57900			31937	5732;14477	22081	22122	36572	36572					0.09541718368666352
KKQVSSIEDKC	11	Unmodified	_KKQVSSIEDKC_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7400817871094	3	422.223705	1263.64929	-0.41416	-0.00017487	3.6046	0.0015219	3.1904	0.0013471	422.2249029262814	23.115	0.48873	23.054	22.663	23.152	-0.060862					12	10	2	0	0	0	0.024757	1	845	845		25.892	12.934	1	66166	+		31938	20254	22082	22123	36573	36573					0.028007901376668087
KKRGYKLK	8	Unmodified	_KKRGYKLK_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.8025817871094	2	510.837468	1019.66038	-0.93963	-0.00048	0.74882	0.00038253	-0.19081	-9.7475E-05	510.8377056702391	45.972	0.66499	45.82	45.544	46.209	-0.15157					57	18	4	0	0	0	0.027866	1	4449	4449		24.203	16.512	1	2492200	+		31939	26891	22083	22124	36574	36574					0.15134025084739733
KKRKISAPS	9	Unmodified	_KKRKISAPS_					0	0	0			REV__ENSG00000185247|ENST00000355220|MAGEA11	REV__ENSG00000185247|ENST00000355220|MAGEA11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3074951171875	2	507.824558	1013.63456	-0.24722	-0.00012554	-0.22979	-0.00011669	-0.47701	-0.00024224	507.8238590065941	43.374	0.39113	43.261	43.145	43.536	-0.11253					16	10	2	0	0	0	0.02435	1	3988	3988		34.173	0	1	434330	+		31940	27745	22084	22125	36575	36575					0.1282913084246502
KKRKKGGK	8	Unmodified	_KKRKKGGK_					0	0	0			REV__ENST00000542701.1_1_12:121013426-121014466:+|nuORF	REV__ENST00000542701.1_1_12:121013426-121014466:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2870178222656	2	465.321986	928.629418	-0.29119	-0.0001355	-3.3009	-0.001536	-3.5921	-0.0016715	465.32049941136427	75.528	0.39978	75.284	75.077	75.477	-0.24455					19	10	2	0	0	0	0.027866	1	9219	9219		4.3163	0	1	295510	+		31941	20004	22085	22126	36576	36576					0.16224871770521077
KKRKKKKK	8	Unmodified	_KKRKKKKK_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;RNF213|p.K345Efs*52|1|0.28|ENSG00000173821|chr17:80289753-80289754|-/G|frameshift_variant;ENST00000367142.4_1_1:205687318-205687402:-|nuORF;ENST00000216797.9_1_14:35871071-35871197:-|nuORF;ENST00000359543.7_1_16:10626568-10626661:-|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213;REV__nc|ENSG00000182196|Q66PJ3-4|ARL6IP4;REV__ENSG00000072657|ENST00000261180|TRHDE;REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3310546875	2	536.395485	1070.77642	-0.37782	-0.00020266	-0.78577	-0.00042148	-1.1636	-0.00062414	536.3953056583046	46.859	0.13591	46.589	46.526	46.662	-0.26939					5	3	2	0	0	0	0.027866	1	4528	4528		4.3163	0	1	87121			31942	8414;18525;36991;20476;29267	22086	22127	36577	36577					0.24385968655451506
KKRKTSTK	8	Unmodified	_KKRKTSTK_					0	0	0		ENSG00000170743|ENST00000318881|SYT9	ENSG00000170743|ENST00000318881|SYT9	ENSG00000170743|ENST00000318881|SYT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2712707519531	2	488.816733	975.618913	2.2488	0.0010993	1.5791	0.00077187	3.8279	0.0018711	488.8174930934578	24.258	0.30471	24.077	23.893	24.198	-0.18089					9	6	2	0	0	0	0.027866	1	989	989		18.324	0.95945	1	35285			31943	8072	22087	22128	36578	36578					0.13012844325419337
KKRKTTNF	8	Unmodified	_KKRKTTNF_					0	0	0		ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.8086853027344	2	511.808908	1021.60326	-0.53159	-0.00027207	0.32283	0.00016523	-0.20876	-0.00010685	511.80891142177006	23.596	0.77908	23.673	23.312	24.091	0.076241					38	17	3	0	0	0	1.0574	1	908	908		27.882	1.1893	1	471330			31944	12087	22088	22129	36579	36579					0.09332557808374986
KKRKTTNF	8	Unmodified	_KKRKTTNF_					0	0	0		ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.808908	1021.60326	-0.66209	-0.00033886	0.29371	0.00015032	-0.36838	-0.00018854	511.8088782730284	23.703	0.67288	23.703	23.321	23.994	0	0.02257	-8.1512E-05	NaN	27.882	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445220			31945	12087	22088	22129							0.09332557808374986
KKRKTTNF	8	Unmodified	_KKRKTTNF_					0	0	0		ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.808908	1021.60326	-0.79093	-0.00040481	0.51606	0.00026412	-0.27488	-0.00014068	511.808981484938	23.726	0.71955	23.665	23.267	23.987	-0.060862	-0.015176	0.00014608	NaN	27.882	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402700			31946	12087	22088	22129							0.09332557808374986
KKRLGLTD	8	Unmodified	_KKRLGLTD_					0	0	0			REV__ENSG00000164089|ENST00000296486|ETNPPL	REV__ENSG00000164089|ENST00000296486|ETNPPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.9007873535156	2	465.790184	929.565815	1.1251	0.00052407	-1.1642	-0.00054225	-0.03904	-1.8184E-05	465.7893674403796	20.165	0.33264	19.97	19.805	20.138	-0.19577					9	6	2	0	0	0	0.027866	1	522	522		25.45	1.9275	1	19041	+		31947	25692	22089	22130	36580	36580					0.09821466542746293
KKRLMEGQ	8	Unmodified	_KKRLMEGQ_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.282958984375	2	495.281669	988.548785	0.28046	0.00013891	2.1319	0.0010559	2.4124	0.0011948	495.28352368310965	69.115	0.8963	68.872	68.47	69.366	-0.24277					63	21	5	0	0	0	0.87148	1	8020	8020		53.351	2.016	1	2109900	+		31948	26568	22090	22131	36581	36581					0.05405222665308429
KKRNSVHVTF	10	Unmodified	_KKRNSVHVTF_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2185974121094	3	405.903406	1214.68839	0.49375	0.00020041	-0.49937	-0.0002027	-0.0056203	-2.2813E-06	405.90318326236627	46.159	0.48165	46.062	45.849	46.331	-0.096649					32	12	4	0	0	0	0.03519	1	4430	4430		38.754	4.6671	1	556880			31949	8462	22091	22132	36582	36582					0.08963303274185819
KKRNSVHVTF	10	Unmodified	_KKRNSVHVTF_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	405.903406	1214.68839	0.48928	0.0001986	-0.57409	-0.00023302	-0.084808	-3.4424E-05	405.9031469369265	46.452	0.5696	46.19	45.891	46.461	-0.26118	0.079535	-0.00044429	NaN	38.754	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382680			31950	8462	22091	22132							0.08963303274185819
KKRPRRSLSI	10	Unmodified	_KKRPRRSLSI_					0	0	0		nc|ENSG00000198690|Q9Y2M0-2|FAN1;ENSG00000198690|ENST00000362065|FAN1	nc|ENSG00000198690|Q9Y2M0-2|FAN1	nc|ENSG00000198690|Q9Y2M0-2|FAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	621.3488159179688	2	620.901663	1239.78877	-1.0211	-0.00063397	-4.0171	-0.0024942	-5.0382	-0.0031282	620.8993376912256	102.87	0.2001	102.74	102.63	102.83	-0.12783					8	4	2	0	0	0	0.03519	1	12806	12806		18.262	2.6203	1	169700			31951	10171	22092	22133	36583	36583					0.17846960327847228
KKRRAPKP	8	Unmodified	_KKRRAPKP_					0	0	0		ENST00000497856.6_1_5:112214403-112214505:-|nuORF	ENST00000497856.6_1_5:112214403-112214505:-|nuORF	ENST00000497856.6_1_5:112214403-112214505:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7695617675781	2	490.827435	979.640317	0.0002799	1.3738E-07	2.6044	0.0012783	2.6046	0.0012784	490.828531041978	42.241	0.64458	42.011	41.725	42.37	-0.2303					41	17	3	0	0	0	0.027866	1	3802	3802		8.2313	0	1	1126400			31952	15603	22093	22134	36584	36584					0.1496827414479185
KKRRIETEQST	11	Unmodified	_KKRRIETEQST_					0	0	0		ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	ENSG00000035720|ENST00000265404|STAP1	MSMS	OPSCC_39_ClassI_Rep-2	2	459.2397155761719	3	459.259918	1374.75793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.55	1	110.54	110.04	111.04	-0.011299								0	0	0	1.4803	1	13959	13959		16.53	2.4438	1				31953	1035	22094	22135	36585	36585					0.08553717432278063
KKRRISWLR	9	Unmodified	_KKRRISWLR_					0	0	0		ENST00000433977.5_1_7:48015924-48015978:-|nuORF	ENST00000433977.5_1_7:48015924-48015978:-|nuORF	ENST00000433977.5_1_7:48015924-48015978:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.9016723632812	2	621.898923	1241.78329	-0.47748	-0.00029695	3.567	0.0022183	3.0895	0.0019214	621.9008995623008	105.33	0.39741	105.32	105.12	105.52	-0.0015945					28	11	3	0	0	0	1.0402	1	13439	13439		12.207	0.69583	1	1660400			31954	14238	22095	22136	36586	36586					0.1720728153602522
KKRRSFSGV	9	Unmodified	_KKRRSFSGV_					0	0	0			REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF;REV__ENSG00000149527|ENST00000378486|PLCH2	REV__ENSG00000149527|ENST00000378486|PLCH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2874145507812	2	532.819807	1063.62506	0.27294	0.00014543	2.2927	0.0012216	2.5656	0.001367	532.8208774425217	77.136	0.40166	76.867	76.595	76.997	-0.26806					15	9	2	0	0	0	0.024405	1	9177	9177		35.618	0	1	342440	+		31955	30673;24685	22096	22137	36587	36587					0.0957936255695131
KKRSIISAQ	9	Unmodified	_KKRSIISAQ_					0	0	0			REV__ENSG00000122970|ENST00000242591|IFT81	REV__ENSG00000122970|ENST00000242591|IFT81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.818603515625	2	515.822015	1029.62948	0.26627	0.00013735	-0.56813	-0.00029306	-0.30187	-0.00015571	515.8216659272197	21.714	0.61934	21.536	21.256	21.875	-0.17721					26	12	4	0	0	0	0.024427	1	684	684		26.693	16.987	1	166640	+		31956	22673	22097	22138	36588	36588					0.11584826979856189
KKRTILWRP	9	Unmodified	_KKRTILWRP_					0	0	0			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.3794555664062	2	599.382574	1196.7506	-0.0023505	-1.4088E-06	-4.2156	-0.0025268	-4.218	-0.0025282	599.3799609845375	102.37	0.72133	102.24	101.99	102.71	-0.12931					46	16	4	0	0	0	0.80658	1	12712	12712		38.806	3.1879	1	899540	+		31957	24497	22098	22139	36589	36589					0.16009074413159396
KKRTILWRP	9	Unmodified	_KKRTILWRP_					0	0	0			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.3792724609375	2	599.382574	1196.7506	0.054084	3.2417E-05	-4.3868	-0.0026294	-4.3327	-0.002597	599.3798319820231	102.48	0.58797	102.31	102.05	102.64	-0.17178					47	13	5	0	0	0	0.87448	1	12722	12722		34.173	1.422	1	851410	+		31958	24497	22098	22139	36590	36590					0.16009074413159396
KKRTKILF	8	Unmodified	_KKRTKILF_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.3201293945312	2	517.347669	1032.68079	-0.15425	-7.9799E-05	1.635	0.00084585	1.4807	0.00076606	517.348423654826	68.08	0.23288	68.099	68.004	68.237	0.018913					7	5	2	0	0	0	0.027866	1	8053	8053		53.351	12.779	1	67500	+		31959	28459	22099	22140	36591	36591					0.16575195744530902
KKRTPLHW	8	Unmodified	_KKRTPLHW_					0	0	0		ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7921142578125	2	533.319443	1064.62433	-0.020089	-1.0714E-05	2.811	0.0014992	2.791	0.0014885	533.3207851019234	19.686	0.44306	19.525	19.282	19.725	-0.1608					13	8	2	0	0	0	0.027866	1	428	428		13.775	0	1	40517			31960	96	22100	22141	36592	36592					0.09460567907876793
KKRTPLHW	8	Unmodified	_KKRTPLHW_					0	0	0		ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.319443	1064.62433	0.52192	0.00027835	1.7585	0.00093784	2.2804	0.0012162	533.3203899120201	19.814	0.34575	19.614	19.405	19.751	-0.2001	0.042939	-0.0006804	NaN	25.45	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44135			31961	96	22100	22141							0.09460567907876793
KKRTPLHW	8	Unmodified	_KKRTPLHW_					0	0	0		ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	ANKRD30B|p.A76P|1|0.13|ENSG00000180777|chr18:14752570-14752570|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.319443	1064.62433	0.68705	0.00036641	2.1952	0.0011708	2.8823	0.0015372	533.3205177294483	19.808	0.34543	19.574	19.374	19.72	-0.23345	0.0033038	-0.00021454	NaN	25.45	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34001			31962	96	22100	22141							0.09460567907876793
KKSAKARK	8	Unmodified	_KKSAKARK_					0	0	0			REV__ENSG00000189060|ENST00000340857|H1-0	REV__ENSG00000189060|ENST00000340857|H1-0	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.7872314453125	2	458.806168	915.597784	-0.23517	-0.0001079	-1.7015	-0.00078065	-1.9366	-0.00088854	458.805463469907	92.324	0.48491	92.201	91.979	92.464	-0.12242					20	11	3	0	0	0	0.027866	1	11361	11361		19.36	1.995	1	115830	+		31963	28094	22101	22142	36593	36593					0.13660879016561012
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.8138122558594	2	502.81419	1003.61383	0.95576	0.00048057	-2.2017	-0.0011071	-1.246	-0.0006265	502.8131940383032	96.131	1.8999	96.133	95.739	97.639	0.0020676					149	43	5	0	0	0	0.87448	1	12160	12160		34.173	3.6689	1	20046000	+		31964	22508	22102	22143	36594	36594					0.11216540462805824
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.8142395019531	2	502.81419	1003.61383	0.69855	0.00035124	-1.6784	-0.00084391	-0.97983	-0.00049267	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	0.80003	1	11883	11883		39.253	7.723	1	14776000	+		31965	22508	22102	22143	36595	36595					0.11216540462805824
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.8134460449219	2	502.81419	1003.61383	-0.52334	-0.00026314	-0.69921	-0.00035157	-1.2226	-0.00061472	502.8139776910766	96.308	1.7928	96.151	95.794	97.587	-0.15646					121	40	5	0	0	0	0.87448	1	11868	11868		34.173	4.331	1	13743000	+		31966	22508	22102	22143	36596	36596					0.11216540462805824
KKSATLLPSF	10	Unmodified	_KKSATLLPSF_					0	0	0		ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF	ENSG00000129226|ENST00000250092|CD68	ENSG00000129226|ENST00000250092|CD68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2760009765625	2	546.326599	1090.63865	-0.7894	-0.00043127	-1.9591	-0.0010703	-2.7485	-0.0015016	546.8263362956283	73.188	0.35768	72.997	72.803	73.16	-0.19026					10	8	2	0	0	0	0.03519	1	8605	8605		47.657	10.498	1	170860			31967	4337	22103	22144	36597	36597					0.09695175545516577
KKSDQGSPK	9	Unmodified	_KKSDQGSPK_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7923889160156	2	487.766906	973.519259	-1.0441	-0.00050928	1.0262	0.00050055	-0.017897	-8.7295E-06	487.76697841599287	36.271	0.62498	36.271	35.849	36.474	0					27	17	3	0	0	0	0.024405	1	2856	2856		35.618	8.9254	1	370660	+		31968	20971	22104	22145	36598	36598					0.031439819208117115
KKSGSKDAIL	10	Unmodified	_KKSGSKDAIL_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MSMS	OPSCC_39_ClassI_Rep-2	2	523.8170776367188	2	523.813856	1045.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.905	1	91.897	91.397	92.397	-0.0082932								0	0	0	0.73925	1	11611	11611		35.152	0.97948	1		+		31969	29177	22105	22146	36599	36599					0.0921770102308983
KKSHIRTL	8	Unmodified	_KKSHIRTL_					0	0	0		nc|ENSG00000116783|Q59H18-3|TNNI3K;ENSG00000116783|ENST00000326637|TNNI3K;nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K	nc|ENSG00000116783|Q59H18-3|TNNI3K	nc|ENSG00000116783|Q59H18-3|TNNI3K	MSMS	OPSCC_39_ClassI_Rep-2	2	491.81317138671875	2	491.811451	981.608348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.83	1	101.83	101.33	102.33	0.0073471								0	0	0	0.70856	1	13005	13005		40.778	3.6191	1				31970	3576	22106	22147	36600	36600					0.11680861670993181
KKSIKGIR	8	Unmodified	_KKSIKGIR_					0	0	0		ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6	ENSG00000230301|ENST00000615035|OR5H6	ENSG00000230301|ENST00000615035|OR5H6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.24932861328125	2	465.316369	928.618185	1.3537	0.00062988	-1.8287	-0.00085094	-0.47507	-0.00022106	465.31557468739385	17.479	0.1981	17.325	17.209	17.408	-0.15403					6	3	2	0	0	0	0.027866	1	175	175		12.959	0.75233	1	11810			31971	10687	22107	22148	36601	36601					0.15102049676374918
KKSIKGIR	8	Unmodified	_KKSIKGIR_					0	0	0		ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6	ENSG00000230301|ENST00000615035|OR5H6	ENSG00000230301|ENST00000615035|OR5H6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.316369	928.618185	-0.13984	-6.5072E-05	0.47832	0.00022257	0.33847	0.0001575	465.3162783772993	17.497	0.19861	17.29	17.166	17.364	-0.20669	-0.017222	0.0014318	NaN	12.959	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14097			31972	10687	22107	22148							0.15102049676374918
KKSKFAEAN	9	Unmodified	_KKSKFAEAN_					0	0	0			REV__ENSG00000000005|ENST00000373031|TNMD	REV__ENSG00000000005|ENST00000373031|TNMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.83770751953125	2	511.785099	1021.55564	-0.26831	-0.00013732	0.38752	0.00019833	0.11921	6.1009E-05	511.7851947679259	46.014	0.56061	46.014	45.818	46.378	0					22	15	2	0	0	0	0.024374	1	4502	4502		40.778	3.6191	1	293750	+		31973	19751	22108	22149	36602	36602					0.045728588175165896
KKSKHSSA	8	Unmodified	_KKSKHSSA_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7749328613281	2	436.751059	871.487565	0.32445	0.0001417	-0.74229	-0.0003242	-0.41784	-0.00018249	436.7512434675498	89.996	0.31801	89.979	89.837	90.155	-0.016716					10	7	2	0	0	0	0.027866	1	11325	11325		31.955	14.59	1	321950	+		31974	21094;36411	22109	22150	36603	36603					0.04668033957523221
KKSKKGGL	8	Unmodified	_KKSKKGGL_					0	0	0			REV__ENSG00000137161|ENST00000372836|CNPY3	REV__ENSG00000137161|ENST00000372836|CNPY3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.25830078125	2	423.281995	844.549437	0.39993	0.00016928	-0.1742	-7.3737E-05	0.22573	9.5548E-05	423.2818335963567	19.566	0.29578	19.405	19.233	19.529	-0.16079					8	5	2	0	0	0	0.027866	1	420	420		4.6817	0	1	15271	+		31975	23731	22110	22151	36604	36604					0.1209438537666756
KKSKKGGL	8	Unmodified	_KKSKKGGL_					0	0	0			REV__ENSG00000137161|ENST00000372836|CNPY3	REV__ENSG00000137161|ENST00000372836|CNPY3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	423.281995	844.549437	1.5332	0.00064899	-1.213	-0.00051346	0.32019	0.00013553	423.2813590125044	19.641	0.24735	19.408	19.275	19.523	-0.23345	0.0011208	-0.00055362	NaN	8.2313	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24245	+		31976	23731	22110	22151							0.1209438537666756
KKSKKKGK	8	Unmodified	_KKSKKKGK_					0	0	0			REV__nc|ENSG00000065000|O14617-4|AP3D1	REV__nc|ENSG00000065000|O14617-4|AP3D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.263427734375	2	466.324194	930.633835	-0.83789	-0.00039073	2.2567	0.0010524	1.4188	0.00066162	466.3250020013336	37.928	0.29458	37.706	37.466	37.761	-0.22149					9	7	2	0	0	0	0.027866	1	3069	3069		7.6903	0	1	225430	+		31977	20298	22111	22152	36605	36605					0.16574336193423278
KKSKKKKK	8	Unmodified	_KKSKKKKK_					0	0	0		ENSG00000125482|ENST00000334270|TTF1;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENSG00000180801|ENST00000315366|ARSJ	ENSG00000125482|ENST00000334270|TTF1;ENST00000521713.1_1_7:6179681-6199085:+|nuORF;ENSG00000180801|ENST00000315366|ARSJ	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8004150390625	2	501.860944	1001.70733	-0.043837	-2.2E-05	3.5779	0.0017956	3.5341	0.0017736	501.8627721996582	46.408	0.098999	46.459	46.375	46.474	0.051395					4	2	2	0	0	0	0.027866	1	4516	4516		1.619	0	1	35428			31978	4109;8998;2781	22112	22153	36606	36606					0.20654884635894177
KKSKKKTSN	9	Unmodified	_KKSKKKTSN_					0	0	0			REV__ENSG00000125482|ENST00000334270|TTF1	REV__ENSG00000125482|ENST00000334270|TTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.826416015625	2	524.827298	1047.64004	0.79891	0.00041929	-1.4791	-0.00077628	-0.6802	-0.00035699	524.8264135376637	97.953	2.024	97.951	97.456	99.48	-0.0020828					149	46	5	0	0	0	0.94809	2	12503	12406;12503		29.15	7.4472	1	12702000	+		31979	22822	22113	22154	36607;36608	36608					0.11812809634284349
KKSKNNVQ	8	Unmodified	_KKSKNNVQ_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;E2F3|p.E454Rfs*12|1|0.29|ENSG00000112242|chr6:20490391-20490392|-/C|frameshift_variant;ENSG00000112242|ENST00000346618|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.764404296875	2	473.277441	944.540328	-0.59905	-0.00028351	-1.9436	-0.00091988	-2.5427	-0.0012034	473.27644831137104	28.276	0.39927	28.124	27.961	28.36	-0.15195					12	9	2	0	0	0	0.027866	1	1632	1632		40.778	5.1599	1	30809			31980	679	22114	22155	36609	36609					0.06583992020330243
KKSKNNVQW	9	Unmodified	_KKSKNNVQW_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;E2F3|p.E454Rfs*12|1|0.29|ENSG00000112242|chr6:20490391-20490392|-/C|frameshift_variant;ENSG00000112242|ENST00000346618|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8316040039062	2	566.317097	1130.61964	-0.34442	-0.00019505	0.7363	0.00041698	0.39188	0.00022193	566.3173464341056	53.445	0.54094	53.318	53.066	53.607	-0.12705					39	14	4	0	0	0	0.024477	1	5648	5648		35.618	0	1	946920			31981	679	22115	22156	36610	36610					0.05955638974478461
KKSKNNVQW	9	Unmodified	_KKSKNNVQW_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;E2F3|p.E454Rfs*12|1|0.29|ENSG00000112242|chr6:20490391-20490392|-/C|frameshift_variant;ENSG00000112242|ENST00000346618|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	566.317097	1130.61964	-0.24928	-0.00014117	0.38606	0.00021863	0.13677	7.7458E-05	566.3172570786031	53.525	0.47344	53.327	53.049	53.523	-0.19739	-0.032391	-0.00017138	NaN	71.296	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869830			31982	679	22115	22156							0.05955638974478461
KKSLFVLRG	9	Unmodified	_KKSLFVLRG_					0	0	0		ENST00000441394.1_1_13:30880936-30881176:-|nuORF	ENST00000441394.1_1_13:30880936-30881176:-|nuORF	ENST00000441394.1_1_13:30880936-30881176:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3135375976562	2	524.337301	1046.66005	-0.40506	-0.00021239	-1.3878	-0.00072767	-1.7929	-0.00094006	524.3367838964307	73.51	0.30977	73.233	73.133	73.443	-0.2769					9	7	2	0	0	0	0.024541	1	8624	8624		14.865	3.3539	1	238600			31983	14361	22116	22157	36611	36611					0.13858605364907817
KKSLGWLAVS	10	Unmodified	_KKSLGWLAVS_					0	0	0			REV__ENSG00000114767|ENST00000232888|RRP9	REV__ENSG00000114767|ENST00000232888|RRP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8002319335938	2	544.826766	1087.63898	-0.2824	-0.00015386	3.5837	0.0019525	3.3013	0.0017986	544.828609620683	50.649	0.47775	50.469	50.245	50.723	-0.18071					20	12	2	0	0	0	0.03519	1	5161	5161		34.173	8.7224	1	538750	+		31984	22141	22117	22158	36612	36612					0.09866595265361866
KKSLYFRS	8	Unmodified	_KKSLYFRS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.799560546875	2	514.798009	1027.58147	-0.054432	-2.8021E-05	2.7115	0.0013959	2.6571	0.0013679	514.799356717267	45.461	1.1885	45.208	44.826	46.015	-0.25252					91	32	5	0	0	0	0.47665	1	4278	4278		87.754	2.3948	1	17317000	+		31985	28132	22118	22159	36613	36613					0.06877753059802671
KKSLYFRS	8	Unmodified	_KKSLYFRS_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.8001098632812	2	514.798009	1027.58147	-0.45759	-0.00023557	3.3326	0.0017156	2.875	0.00148	514.7996735856224	45.41	1.2015	45.199	44.871	46.072	-0.21109					85	33	4	0	0	0	0.77775	1	4319	4319		60.972	0.67798	1	16377000	+		31986	28132	22118	22159	36614	36614					0.06877753059802671
KKSPNSAAHKI	11	Unmodified	_KKSPNSAAHKI_					0	0	0			REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	590.8663330078125	2	590.843479	1179.67241	0.64898	0.00038345	-3.7849	-0.0022363	-3.1359	-0.0018528	590.8420499103397	102.31	0.30866	102.3	102.15	102.46	-0.0054474					9	6	2	0	0	0	0.024804	1	13031	13031		65.465	7.2191	1	24401	+		31987	21511	22119	22160	36615	36615					0.08975597037260741
KKSSRIQK	8	Unmodified	_KKSSRIQK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7925109863281	2	487.808908	973.603263	-0.85794	-0.00041851	2.7044	0.0013192	1.8465	0.00090073	487.81000515834296	36.083	0.37547	36.122	35.892	36.267	0.038044					21	10	3	0	0	0	0.027866	1	2770	2770		40.573	22.248	1	302030	+		31988	25017	22120	22161	36616	36616					0.11540557808382346
KKSVKTLSD	9	Unmodified	_KKSVKTLSD_					0	0	0		nc|ENSG00000254685|O14772-2|FPGT;ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772|FPGT	nc|ENSG00000254685|O14772-2|FPGT	nc|ENSG00000254685|O14772-2|FPGT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7861022949219	2	503.300581	1004.58661	-0.566	-0.00028487	-3.7581	-0.0018914	-4.3241	-0.0021763	503.2990496015204	54.364	0.6799	54.364	54.043	54.723	0					46	19	3	0	0	0	0.024381	1	5975	5975		21.96	0	1	560490			31989	10882	22121	22162	36617	36617					0.08450012131777385
KKSVLKAIE	9	Unmodified	_KKSVLKAIE_					0	0	0		ENSG00000106367|ENST00000337619|AP1S1	ENSG00000106367|ENST00000337619|AP1S1	ENSG00000106367|ENST00000337619|AP1S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2760925292969	2	508.329142	1014.64373	-0.046989	-2.3886E-05	-0.68913	-0.00035031	-0.73612	-0.00037419	508.32866318477215	71.047	0.30157	71.058	70.937	71.239	0.010735					11	7	2	0	0	0	0.024456	1	8530	8530		51.193	14.034	1	301270			31990	2784	22122	22163	36618	36618					0.13699479408148818
KKTCTESDVSQ	11	Unmodified	_KKTCTESDVSQ_					0	0	0		ENST00000421413.6_1_6:133646543-133785920:+|nuORF;nc|ENSG00000112319|O95677-3|EYA4;nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4	ENST00000421413.6_1_6:133646543-133785920:+|nuORF	ENST00000421413.6_1_6:133646543-133785920:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.18304443359375	3	409.195815	1224.56562	-0.23716	-9.7046E-05	-2.5867	-0.0010585	-2.8239	-0.0011555	409.1947498207734	25.14	0.48255	24.914	24.665	25.148	-0.22683					16	10	2	0	0	0	0.024791	1	1168	1168		54.343	9.3211	1	51300			31991	3201	22123	22164	36619	36619					-0.03768366030067227
KKTEGYTII	9	Unmodified	_KKTEGYTII_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000462259.5_1_1:234527325-234536616:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.8021850585938	2	526.802957	1051.59136	-0.67997	-0.00035821	0.599	0.00031555	-0.08097	-4.2655E-05	526.803106718843	76.486	0.92637	76.258	75.927	76.853	-0.22843					68	22	5	0	0	0	0.35646	1	9401	9401		68.787	0.30212	1	3284800			31992	1224	22124	22165	36620	36620					0.06762896274517516
KKTGINPDN	9	Unmodified	_KKTGINPDN_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7744140625	2	493.766906	985.519259	0.77535	0.00038284	0.0052469	2.5907E-06	0.7806	0.00038543	493.7666266184871	36.784	0.49958	36.784	36.543	37.042	0					31	12	4	0	0	0	0.024261	1	2961	2961		45.972	5.1941	1	933790			31993	4977	22125	22166	36621	36621					0.025919819208070294
KKTKECHII	9	Unmodified	_KKTKECHII_					0	0	0			REV__chr1:241867055-241872035|439|12.97|0.46|4.82|+|1|EXO1,None|1	REV__chr1:241867055-241872035|439|12.97|0.46|4.82|+|1|EXO1,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.302978515625	2	550.318251	1098.62195	-0.85279	-0.0004693	-3.9223	-0.0021585	-4.7751	-0.0026278	550.3146122261505	33.642	0.45735	33.648	33.423	33.881	0.0066261					20	11	2	0	0	0	0.024344	1	2404	2404		64.207	21.811	1	130380	+		31994	19323	22126	22167	36622	36622					0.07658351387908624
KKTKECHII	9	Unmodified	_KKTKECHII_					0	0	0			REV__chr1:241867055-241872035|439|12.97|0.46|4.82|+|1|EXO1,None|1	REV__chr1:241867055-241872035|439|12.97|0.46|4.82|+|1|EXO1,None|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.318251	1098.62195	-0.3015	-0.00016592	-6.6099	-0.0036376	-6.9114	-0.0038035	550.314361235179	33.589	0.42713	33.645	33.423	33.85	0.056568	-0.037157	-0.00064838	NaN	64.207	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100690	+		31995	19323	22126	22167							0.07658351387908624
KKTKECHII	9	Unmodified	_KKTKECHII_					0	0	0			REV__chr1:241867055-241872035|439|12.97|0.46|4.82|+|1|EXO1,None|1	REV__chr1:241867055-241872035|439|12.97|0.46|4.82|+|1|EXO1,None|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.318251	1098.62195	-1.3683	-0.00075302	-4.5869	-0.0025243	-5.9553	-0.0032773	550.3150303163734	33.777	0.42885	33.601	33.391	33.82	-0.17557	-0.081229	0.0015782	NaN	64.207	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297800	+		31996	19323	22126	22167							0.07658351387908624
KKTKKKGW	8	Unmodified	_KKTKKKGW_					0	0	0		ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	ENST00000360264.7_1_7:101898640-101898772:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.3243408203125	2	502.324194	1002.63383	-0.014464	-7.2655E-06	4.2571	0.0021385	4.2427	0.0021312	502.32608737352473	106.04	0.54401	106.04	105.75	106.3	-0.0013123					49	18	4	0	0	0	1.0574	1	13573	13573		18.324	0.95945	1	455570			31997	12759	22127	22168	36623	36623					0.13262336193417923
KKTKKKKIC	9	Unmodified	_KKTKKKKIC_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8294677734375	2	552.867911	1103.72127	-0.68114	-0.00037658	1.557	0.00086084	0.8759	0.00048426	552.8695802894451	49.141	0.28518	48.988	48.756	49.041	-0.15277					12	7	2	0	0	0	0.024541	1	5011	5011		3.1592	0	1	115030			31998	15909	22128	22169	36624	36624					0.17355794072659592
KKTKLRVV	8	Unmodified	_KKTKLRVV_					0	0	0		VSTM4|p.M78K|1|0.22|ENSG00000165633|chr10:49107818-49107818|A/T|missense_variant	VSTM4|p.M78K|1|0.22|ENSG00000165633|chr10:49107818-49107818|A/T|missense_variant	VSTM4|p.M78K|1|0.22|ENSG00000165633|chr10:49107818-49107818|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2819519042969	2	486.339844	970.665135	0.29695	0.00014442	2.1892	0.0010647	2.4861	0.0012091	486.34116940659766	89.585	0.50525	89.563	89.241	89.746	-0.021645					14	11	2	0	0	0	0.027866	1	11235	11235		19.36	4.6959	1	64776			31999	38147	22129	22170	36625	36625					0.1786290922751732
KKTPPPPPPP	10	Unmodified	_KKTPPPPPPP_					0	0	0			REV__ENSG00000188316|ENST00000341276|ENO4	REV__ENSG00000188316|ENST00000341276|ENO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.3143920898438	2	528.316035	1054.61752	0.75618	0.0003995	-3.9542	-0.0020891	-3.198	-0.0016896	528.3141069659536	97.333	1.0258	97.21	96.706	97.732	-0.12368					46	22	3	0	0	0	1.0004	1	12070	12070		45.952	3.4775	1	207000	+		32000	28028	22130	22171	36626	36626					0.09239210236660256
KKTQLPAKVP	10	Unmodified	_KKTQLPAKVP_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.353271484375	2	555.355691	1108.69683	-0.12046	-6.6898E-05	-3.7617	-0.0020891	-3.8821	-0.002156	555.3534816537995	99.884	0.65701	99.713	99.316	99.974	-0.17088					48	18	4	0	0	0	1.1329	1	12358	12358		27.882	1.1893	1	851930	+		32001	26696	22131	22172	36627	36627					0.14682857190769028
KKTTAIIA	8	Unmodified	_KKTTAIIA_					0	0	0		ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;nc|ENSG00000152061|B7ZAP0|RABGAP1L;ENST00000469553.6_1_1:174927262-174959135:+|nuORF	ENSG00000152061|ENST00000681986|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2750244140625	2	423.276378	844.538203	0.89158	0.00037738	-4.0135	-0.0016988	-3.122	-0.0013214	423.274572191514	110.14	0.65965	110.14	109.81	110.47	0					38	20	3	0	0	0	1.0574	1	14001	14001		14.664	2.4572	1	449880			32002	6245	22132	22173	36628	36628					0.10971563282510033
KKTTAIIA	8	Unmodified	_KKTTAIIA_					0	0	0		ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;nc|ENSG00000152061|B7ZAP0|RABGAP1L;ENST00000469553.6_1_1:174927262-174959135:+|nuORF	ENSG00000152061|ENST00000681986|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2749938964844	2	423.276378	844.538203	-0.082883	-3.5082E-05	-3.2282	-0.0013664	-3.3111	-0.0014015	423.27490422918225	87.973	0.84181	87.795	87.405	88.247	-0.17875					58	20	4	0	0	0	1.0574	1	10685	10685		14.664	1.7049	1	1819200			32003	6245	22132	22173	36629	36629					0.10971563282510033
KKTTKAKKL	9	Unmodified	_KKTTKAKKL_					0	0	0			REV__ENST00000437414.1_1_17:58804528-58804777:-|nuORF	REV__ENST00000437414.1_1_17:58804528-58804777:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2982788085938	2	523.358234	1044.70191	-0.50767	-0.00026569	0.563	0.00029465	0.055329	2.8957E-05	523.3588953998885	52.045	0.20798	51.898	51.777	51.985	-0.14735					7	5	2	0	0	0	0.024541	1	5545	5545		17.365	0.89182	1	55244	+		32004	32479	22133	22174	36630	36630					0.18135161053419324
KKTTLSKAVF	10	Unmodified	_KKTTLSKAVF_					0	0	0		nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2;ENST00000397747.4_1_9:5557645-5569982:+|nuORF	nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.8456420898438	2	561.847699	1121.68084	0.071573	4.0213E-05	-3.5519	-0.0019956	-3.4803	-0.0019554	561.8455167309728	95.387	1.0647	95.391	95.053	96.117	0.0041199					85	24	5	0	0	0	1.1088	1	12097	12097		31.53	2.3803	1	1612900			32005	18640	22134	22175	36631	36631					0.12487150953893433
KKTTLSKAVF	10	Unmodified	_KKTTLSKAVF_					0	0	0		nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2;ENST00000397747.4_1_9:5557645-5569982:+|nuORF	nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.8458862304688	2	561.847699	1121.68084	-0.10164	-5.7109E-05	-3.3286	-0.0018702	-3.4303	-0.0019273	561.8456674057395	95.47	0.99585	95.334	94.982	95.978	-0.13689					72	22	5	0	0	0	1.1088	1	11768	11768		31.53	7.0106	1	1624700			32006	18640	22134	22175	36632	36632					0.12487150953893433
KKTVFLLVS	9	Unmodified	_KKTVFLLVS_					0	0	0			REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7994384765625	2	517.83406	1033.65357	0.47455	0.00024574	-3.706	-0.0019191	-3.2315	-0.0016734	517.8321060708922	104.57	0.3084	104.4	104.2	104.51	-0.16791					12	7	2	0	0	0	0.024541	1	13002	13002		21.96	2.5999	1	62770	+		32007	28403	22135	22176	36633	36633					0.1380866741351383
KKTWMHKG	8	Unmodified	_KKTWMHKG_					0	0	0			REV__nc|ENSG00000110172|Q9UHD1-2|CHORDC1	REV__nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2984313964844	2	508.278929	1014.54331	-0.56426	-0.0002868	4.292	0.0021815	3.7277	0.0018947	508.78439572780616	27.129	0.50498	26.961	26.638	27.142	-0.16816					23	11	3	0	0	0	0.027866	1	1423	1423		55.504	9.5523	1	56374	+		32008	21844	22136	22177	36634	36634					0.03661543873499795
KKVAKAQKQ	9	Unmodified	_KKVAKAQKQ_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8324584960938	2	514.832383	1027.65021	0.89948	0.00046308	-0.94476	-0.00048639	-0.045284	-2.3314E-05	514.83173416295	18.016	0.8416	17.859	17.405	18.247	-0.15637					35	16	4	0	0	0	0.98128	1	272	272		24.203	3.7209	1	328940	+		32009	22385	22137	22178	36635	36635					0.13749417359508698
KKVARTIGIS	10	Unmodified	_KKVARTIGIS_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000563749.1_1_16:89627907-89628201:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7976684570312	2	536.84549	1071.67643	-0.57418	-0.00030824	0.68757	0.00036912	0.1134	6.0876E-05	536.845889463046	66.204	0.19322	65.923	65.788	65.981	-0.28148					5	4	2	0	0	0	0.03519	1	7847	7847		27.882	13.017	1	112500			32010	7696	22138	22179	36636	36636					0.14345686530987223
KKVCKWYEQIS	11	Unmodified	_KKVCKWYEQIS_					0	0	0			REV__ENST00000479790.2_1_13:22067390-22069479:-|nuORF	REV__ENST00000479790.2_1_13:22067390-22069479:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2665710449219	3	471.251595	1410.73296	-0.66767	-0.00031464	3.1302	0.0014751	2.4625	0.0011605	471.25307037772274	29.906	0.55521	29.733	29.533	30.088	-0.17258					23	12	3	0	0	0	0.02473	1	1839	1839		39.873	2.2733	1	104990	+		32011	25891	22139	22180	36637	36637					0.04401946305347337
KKVEPPAPKV	10	Unmodified	_KKVEPPAPKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8402099609375	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	0.88896	1	12728	12728		54.776	7.119	1	11254000			32012	6479	22140	22181	36638	36638					0.12811168299458586
KKVGKKKI	8	Unmodified	_KKVGKKKI_					0	0	0			REV__CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant	REV__CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.81292724609375	2	464.836937	927.659321	-0.85301	-0.00039651	1.4733	0.00068482	0.62024	0.00028831	464.8372723845927	38.063	0.19647	37.845	37.792	37.988	-0.21848					7	5	2	0	0	0	0.027866	1	3106	3106		8.8223	4.1406	1	141410	+		32013	19623	22141	22182	36639	36639					0.19259810715834647
KKVGSPQPPR	10	Unmodified	_KKVGSPQPPR_					0	0	0			REV__SULT1C2|p.E95K|1|0.38|ENSG00000198203|chr2:108300843-108300843|G/A|missense_variant	REV__SULT1C2|p.E95K|1|0.38|ENSG00000198203|chr2:108300843-108300843|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8117065429688	2	547.327465	1092.64038	-1.6338	-0.00089423	0.95018	0.00052006	-0.68363	-0.00037417	547.8297893213233	46.214	0.55511	46.063	45.823	46.378	-0.15157					22	15	2	0	0	0	0.03519	1	4583	4583		32.812	3.6629	1	66739	+		32014	37589	22142	22183	36640	36640					0.0977622935411091
KKVGVILAQ	9	Unmodified	_KKVGVILAQ_					0	0	0			REV__ENSG00000122254|ENST00000261374|HS3ST2	REV__ENSG00000122254|ENST00000261374|HS3ST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.29595947265625	2	478.318577	954.622602	0.74663	0.00035713	-0.72681	-0.00034765	0.019818	9.4795E-06	478.3181510263633	69.692	0.40871	69.692	69.506	69.915	0					23	9	3	0	0	0	0.024294	1	8431	8431		45.952	15.448	1	167890	+		32015	22634	22143	22184	36641	36641					0.14347514099267755
KKVKKKSL	8	Unmodified	_KKVKKKSL_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2843322753906	2	479.84222	957.669886	0.31508	0.00015119	-0.99117	-0.0004756	-0.67609	-0.00032442	479.84224882688216	75.512	0.17526	75.522	75.363	75.539	0.010376					7	4	2	0	0	0	0.027866	1	9185	9185		20.482	11.011	1	293580	+		32016	24030	22144	22185	36642	36642					0.18935793370269494
KKVLLHAF	8	Unmodified	_KKVLLHAF_					0	0	0			REV__nc|ENSG00000135913|Q86T82-2|USP37	REV__nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7718200683594	2	478.308013	954.601472	0.07394	3.5366E-05	-4.4195	-0.0021139	-4.3456	-0.0020785	478.30589648401127	24.822	0.35602	24.822	24.563	24.919	0					9	7	2	0	0	0	0.027866	1	1101	1101		28.254	0.37203	1	24313	+		32017	23594	22145	22186	36643	36643					0.12235548790408757
KKVMSCMKN	9	Unmodified	_KKVMSCMKN_					0	0	0			REV__ENST00000449832.1_1_2:160545868-160546547:-|nuORF	REV__ENST00000449832.1_1_2:160545868-160546547:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.558349609375	2	534.771765	1067.52898	-1.2093	-0.00064671	-2.7394	-0.0014649	-3.9487	-0.0021116	534.7704344047341	35.374	0.22511	35.374	35.306	35.531	0					9	5	2	0	0	0	0.024447	1	2742	2742		32.812	0	1	52607	+		32018	32687	22146	22187	36644	36644					-0.0020861266129941214
KKVPAIAL	8	Unmodified	_KKVPAIAL_					0	0	0		ENSG00000109158|ENST00000264318|GABRA4	ENSG00000109158|ENST00000264318|GABRA4	ENSG00000109158|ENST00000264318|GABRA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.7037658691406	2	420.289288	838.564024	-0.27189	-0.00011427	0.72624	0.00030523	0.45435	0.00019096	420.28952475639164	33.762	0.57669	33.562	33.325	33.902	-0.20019					23	14	2	0	0	0	0.027866	1	2430	2430		14.664	13.199	1	195260			32019	2965	22147	22188	36645	36645					0.1382845752477806
KKVPLAPPK	9	Unmodified	_KKVPLAPPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2708740234375	2	489.328945	976.643337	-0.26013	-0.00012729	0.024752	1.2112E-05	-0.23537	-0.00011517	489.32883343369116	59.228	0.40512	59.04	58.819	59.224	-0.18795					12	9	2	0	0	0	0.024541	1	6528	6528		12.207	0	1	127890			32020	6479	22148	22189	36646	36646					0.15408104478945006
KKVPYAKP	8	Unmodified	_KKVPYAKP_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7381591796875	2	465.792195	929.569838	0.52246	0.00024336	2.8179	0.0013126	3.3404	0.0015559	465.7934551315629	45.175	0.27279	45.219	45.038	45.311	0.04388					10	7	2	0	0	0	0.027866	1	4289	4289		7.6903	0	1	97363			32021	5036	22149	22190	36647	36647					0.10223556036464743
KKVQEAKV	8	Unmodified	_KKVQEAKV_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.29248046875	2	465.292559	928.570566	0.42767	0.00019899	-0.44252	-0.0002059	-0.014849	-6.9092E-06	465.29229069226864	19.333	0.93831	19.173	18.836	19.774	-0.16079					49	18	5	0	0	0	0.93274	1	426	426		47.916	0	1	909340			32022	653	22150	22191	36648	36648					0.10342350685516521
KKVRETIPD	9	Unmodified	_KKVRETIPD_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3189697265625	2	543.319306	1084.62406	-0.72331	-0.00039299	0.18859	0.00010246	-0.53473	-0.00029053	543.3194521198021	59.51	1.4855	59.596	59.206	60.691	0.085682					94	39	4	0	0	0	0.22902	1	6707	6707		85.161	2.4103	1	8118900	+		32023	27537	22151	22192	36649	36649					0.08513103397376653
KKWKSRYLMEQ	11	Unmodified	_KKWKSRYLMEQ_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000443339.5_1_3:9475802-9506425:+|nuORF;ENST00000488236.5_1_3:9495468-9506425:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000488236.5_1_3:9495468-9506425:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.60418701171875	3	499.606261	1495.79695	0.097971	4.8947E-05	-3.8356	-0.0019163	-3.7376	-0.0018673	499.6043597433759	56.201	0.72645	55.985	55.702	56.429	-0.21607					60	18	5	0	0	0	1.0558	1	6089	6089		23.514	2.4821	1	3615600			32024	18490;15389	22152	22193	36650	36650					0.06888726462307204
KKWLQSQL	8	Unmodified	_KKWLQSQL_					0	0	0			REV__ENST00000331163.10_1_22:39640366-39640519:-|nuORF	REV__ENST00000331163.10_1_22:39640366-39640519:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.8074340820312	2	515.805834	1029.59712	4.7982	0.0024749	-1.8892	-0.00097446	2.909	0.0015005	515.8047477323729	17.517	0.33339	17.578	17.353	17.686	0.06036					15	10	2	0	0	0	1.0574	1	137	137		17.365	0.89182	1	21029	+		32025	30470	22153	22194	36651	36651					0.08350039576839663
KKWLRLTN	8	Unmodified	_KKWLRLTN_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8082885742188	2	529.827101	1057.63965	-0.1713	-9.0761E-05	-2.029	-0.001075	-2.2003	-0.0011658	529.8261775616119	71.659	0.18999	71.659	71.566	71.756	0					6	4	2	0	0	0	0.027866	1	8694	8694		45.952	15.448	1	54906	+		32026	19683	22154	22195	36652	36652					0.11313434705061809
KKWRAVISR	9	Unmodified	_KKWRAVISR_					0	0	0		ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.7692260742188	2	572.359099	1142.70365	0.71873	0.00041137	4.3745	0.0025038	5.0933	0.0029152	572.3621400704559	83.271	0.47488	83.059	82.876	83.351	-0.21159					12	10	2	0	0	0	0.024477	1	10066	10066		20.947	2.6225	1	19442			32027	3914	22155	22196	36653	36653					0.13800214862021676
KKWRDGLI	8	Unmodified	_KKWRDGLI_					0	0	0			REV__nc|ENSG00000105856|O60381-3|HBP1	REV__nc|ENSG00000105856|O60381-3|HBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2926940917969	2	508.306001	1014.59745	1.4876	0.00075618	3.5656	0.0018124	5.0532	0.0025686	508.8077700836529	74.178	0.21436	74.178	74.042	74.256	0					6	4	2	0	0	0	0.027866	1	9077	9077		38.806	13.356	1	43517	+		32028	21571	22156	22197	36654	36654					0.09073459296701003
KKYKNIVLLK	10	Unmodified	_KKYKNIVLLK_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2315673828125	3	416.279703	1245.81728	-0.84545	-0.00035194	-1.653	-0.00068812	-2.4985	-0.0010401	416.27930692766665	21.074	0.29636	20.862	20.773	21.069	-0.2128					7	5	2	0	0	0	0.03519	1	603	603		42.864	22.027	1	5910.3			32029	15514	22157	22198	36655	36655					0.20420265184407072
KKYRVSIE	8	Unmodified	_KKYRVSIE_					0	0	0		nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.80322265625	2	511.803291	1021.59203	0.27806	0.00014231	0.02918	1.4934E-05	0.30724	0.00015725	511.8029576351177	18.81	0.74131	18.606	18.312	19.053	-0.20371					42	14	5	0	0	0	1.0338	1	353	353		31.955	4.0726	1	378450			32030	5826	22158	22199	36656	36656					0.08209735714240196
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2710266113281	2	451.271293	900.528032	0.31706	0.00014308	-0.31553	-0.00014239	0.0015265	6.8885E-07	451.27109752857245	46.975	0.62913	46.975	46.659	47.289	0					44	16	4	0	0	0	0.5973	1	4685	4685		52.937	10.541	1	1831100			32031	6320	22159	22200	36657	36657					0.07378955557271638
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2706298828125	2	451.271293	900.528032	0.51563	0.00023269	-0.51209	-0.00023109	0.0035465	1.6004E-06	451.2708931308257	47.137	0.75073	46.984	46.55	47.3	-0.15301					38	19	3	0	0	0	0.45795	1	4684	4684		62.107	17.991	1	1562100			32032	6320	22159	22200	36658	36658					0.07378955557271638
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.27069091796875	2	451.271293	900.528032	-0.30225	-0.0001364	0.56288	0.00025401	0.26063	0.00011761	451.2714299893135	46.954	0.55495	47.013	46.693	47.247	0.059097					32	14	3	0	0	0	0.32811	2	4621	4610;4621		71.877	27.761	1	1797500			32033	6320	22159	22200	36659;36660	36660					0.07378955557271638
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.271293	900.528032	0.19997	9.0241E-05	-0.58902	-0.00026581	-0.38905	-0.00017557	451.27094946951604	46.938	0.84579	46.841	46.572	47.418	-0.096649	-0.087133	-0.00036474	NaN	71.877	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1144800			32034	6320	22159	22200							0.07378955557271638
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.271293	900.528032	0.14094	6.3604E-05	-0.42923	-0.0001937	-0.28829	-0.0001301	451.2709591054966	47.192	0.93903	46.923	46.628	47.567	-0.26939	-0.005719	-0.00022053	NaN	71.877	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1231000			32035	6320	22159	22200							0.07378955557271638
KLAAAISEV	9	Unmodified	_KLAAAISEV_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.271293	900.528032	-0.24754	-0.00011171	-0.15111	-6.8192E-05	-0.39865	-0.0001799	451.27112624359137	47.028	0.97462	46.834	46.545	47.519	-0.19387	-0.093963	3.0488E-05	NaN	71.877	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1027900			32036	6320	22159	22200							0.07378955557271638
KLAAGHELQP	10	Unmodified	_KLAAGHELQP_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.7459716796875	2	532.298373	1062.58219	-0.18739	-9.9749E-05	-0.56908	-0.00030292	-0.75647	-0.00040267	532.2984003749846	32.369	0.67466	32.133	31.782	32.457	-0.23666					26	15	3	0	0	0	0.03519	1	2248	2248		29.17	9.8101	1	122970			32037	6289	22160	22201	36661	36661					0.053405477088290354
KLAALGTIVGG	11	Unmodified	_KLAALGTIVGG_					0	0	0			REV__ENSG00000164484|ENST00000296978|TMEM200A	REV__ENSG00000164484|ENST00000296978|TMEM200A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7705993652344	2	500.313492	998.612431	-0.20346	-0.00010179	0.18965	9.4883E-05	-0.013808	-6.9086E-06	500.31324827240206	65.776	0.45689	65.503	65.263	65.72	-0.27282					19	12	2	0	0	0	0.024502	1	7758	7758		67.494	7.3754	1	153080	+		32038	25759	22161	22202	36662	36662					0.11306906374068149
KLAAVVNNL	9	Unmodified	_KLAAVVNNL_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2924499511719	2	471.292559	940.570566	-0.11834	-5.5771E-05	0.038407	1.8101E-05	-0.07993	-3.7671E-05	471.29258327038116	50.194	1.2249	50.194	49.805	51.03	0					106	35	4	0	0	0	0.23085	1	5206	5206		84.916	10.66	1	24213000			32039	18861	22162	22203	36663	36663					0.09790350685523208
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.79248046875	2	542.792924	1083.57129	-1.5228	-0.00082659	0.77836	0.00042249	-0.74448	-0.0004041	542.7932379614704	44.36	1.4576	44.36	43.621	45.079	0					114	41	5	0	0	0	0.020687	3	4223	4223;4234;4247		148.99	33.528	1	4463200			32040	4102;18123	22163	22204	36664;36665;36666	36664					0.032851453345756454
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.792236328125	2	542.792924	1083.57129	-1.7908	-0.00097204	1.1027	0.00059854	-0.68812	-0.00037351	542.7934244552387	44.531	1.3381	44.386	43.709	45.047	-0.1459					102	38	4	0	0	0	0.094442	2	4240	4240;4253		112.41	21.634	1	3930200			32041	4102;18123	22163	22204	36667;36668	36667					0.032851453345756454
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.7928466796875	2	542.792924	1083.57129	-1.0461	-0.00056784	0.4129	0.00022412	-0.63324	-0.00034372	542.7930621034176	44.398	1.4325	44.435	43.706	45.138	0.0369					111	40	5	0	0	0	0.03666	3	4154	4154;4188;4201		136.27	21.634	1	3928300			32042	4102;18123	22163	22204	36669;36670;36671	36669					0.032851453345756454
KLADQYPHL	9	Unmodified	_KLADQYPHL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693|SOX10	ENSG00000125398|ENST00000245479|SOX9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.792924	1083.57129	-0.99627	-0.00054077	4.0651	0.0022065	3.0688	0.0016657	542.7938407891179	44.792	0.23608	44.54	44.354	44.59	-0.25252	0.10961	0.0036029	NaN	148.99	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78918			32043	4102;18123	22163	22204							0.032851453345756454
KLADYKNKV	9	Unmodified	_KLADYKNKV_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8165283203125	2	539.816399	1077.61824	-0.3545	-0.00019136	0.73488	0.0003967	0.38038	0.00020534	539.816747087408	40.802	0.5349	40.802	40.516	41.051	0					51	14	4	0	0	0	0.19099	1	3614	3614		90.37	7.6193	1	4717200			32044	9893	22164	22205	36672	36672					0.0825400488570267
KLADYKNKV	9	Unmodified	_KLADYKNKV_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.816162109375	2	539.816399	1077.61824	-0.88303	-0.00047668	1.1536	0.00062272	0.27055	0.00014605	539.8169806934227	40.98	0.52589	41.003	40.764	41.29	0.023006					50	14	4	0	0	0	0.22902	2	3588	3588;3600		85.161	10.906	1	4840400			32045	9893	22164	22205	36673;36674	36673					0.0825400488570267
KLAEGVLDV	9	Unmodified	_KLAEGVLDV_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.27862548828125	2	472.276575	942.538597	0.36088	0.00017044	-1.0345	-0.00048855	-0.67358	-0.00031812	472.2758417221682	56.235	1.2855	56.235	55.249	56.535	0					51	35	2	0	0	0	0.18994	1	6251	6251		90.601	2.4239	1	5548200			32046	9241	22165	22206	36675	36675					0.0650293821172454
KLAEGVLDV	9	Unmodified	_KLAEGVLDV_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2783508300781	2	472.276575	942.538597	-0.053444	-2.524E-05	-0.64146	-0.00030295	-0.69491	-0.00032819	472.27601031055593	56.348	1.1	56.192	55.48	56.58	-0.15601					45	29	2	0	0	0	0.094442	2	6254	6242;6254		112.41	16.341	1	5729500			32047	9241	22165	22206	36676;36677	36677					0.0650293821172454
KLAEGVLDV	9	Unmodified	_KLAEGVLDV_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2779541015625	2	472.276575	942.538597	-0.21493	-0.00010151	-0.55669	-0.00026291	-0.77163	-0.00036442	472.2760642599516	56.12	1.4265	56.218	55.819	57.246	0.097893					73	39	3	0	0	0	0.15388	2	6157	6146;6157		98.582	19.131	1	5633100			32048	9241	22165	22206	36678;36679	36679					0.0650293821172454
KLAEGVLDV	9	Unmodified	_KLAEGVLDV_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.276575	942.538597	0.29209	0.00013795	-1.1652	-0.00055032	-0.87315	-0.00041237	472.2757591450909	56.341	1.0569	56.125	55.372	56.429	-0.21607	-0.067206	-0.00029295	NaN	112.41	53	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2029800			32049	9241	22165	22206							0.0650293821172454
KLAEKDKEL	9	Unmodified	_KLAEKDKEL_					0	0	0		ENSG00000172361|ENST00000398545|CFAP53	ENSG00000172361|ENST00000398545|CFAP53	ENSG00000172361|ENST00000398545|CFAP53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.8049926757812	2	537.313689	1072.61282	-0.90572	-0.00048665	0.55155	0.00029636	-0.35417	-0.0001903	537.3137733466601	36.828	0.69492	36.867	36.613	37.308	0.038044					31	17	3	0	0	0	0.024427	1	2964	2964		26.693	1.1189	1	345120			32050	8267	22166	22207	36680	36680					0.07942281303235177
KLAELEEAL	9	Unmodified	_KLAELEEAL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2864074707031	2	508.28714	1014.55973	-0.064905	-3.299E-05	-0.061596	-3.1308E-05	-0.1265	-6.4299E-05	508.2870741567593	58.04	1.277	58.04	57.758	59.035	0					97	34	5	0	0	0	0.013293	4	6565	6543;6553;6565;6580		190.52	33.189	1	23768000		+	32051	520	22167	22208	36681;36682;36683;36684	36683					0.05302903520566815
KLAELEEAL	9	Unmodified	_KLAELEEAL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.28265380859375	2	508.28714	1014.55973	-0.84588	-0.00042995	0.88435	0.0004495	0.038466	1.9552E-05	508.2875091966944	58.27	1.3365	58.095	57.825	59.161	-0.1749					101	36	5	0	0	0	0.086035	2	6546	6546;6584		115.49	16.865	1	16857000		+	32052	520	22167	22208	36685;36686	36685					0.05302903520566815
KLAELEEAL	9	Unmodified	_KLAELEEAL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2858581542969	2	508.28714	1014.55973	-0.53337	-0.00027111	0.53601	0.00027245	0.002637	1.3403E-06	508.287376244892	57.904	1.3834	57.995	57.721	59.105	0.091221					100	37	5	0	0	0	0.013293	5	6453	6442;6453;6464;6480;6492		205.58	29.851	1	17699000		+	32053	520	22167	22208	36687;36688;36689;36690;36691	36688					0.05302903520566815
KLAELEEAL	9	Unmodified	_KLAELEEAL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2866516113281	2	508.28714	1014.55973	-0.091541	-4.6529E-05	-0.68926	-0.00035034	-0.7808	-0.00039687	508.28685192013046	58.238	1.073	58.061	57.795	58.868	-0.17776					63	26	5	0	0	0	0.020687	2	6379	6379;6404		148.99	17.794	1	3611000		+	32054	520	22167	22208	36692;36693	36692					0.05302903520566815
KLAELEEAL	9	Unmodified	_KLAELEEAL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2862548828125	2	508.28714	1014.55973	-0.19749	-0.00010038	0.10567	5.371E-05	-0.091818	-4.667E-05	508.28712281739155	58.147	1.016	57.956	57.48	58.496	-0.19018					59	25	3	0	0	0	0.014918	1	6381	6381		162.25	18.366	1	3701300		+	32055	520	22167	22208	36694	36694					0.05302903520566815
KLAELEEAL	9	Unmodified	_KLAELEEAL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2848815917969	2	508.28714	1014.55973	0.19711	0.00010019	-0.17003	-8.6423E-05	0.027081	1.3765E-05	508.2866993171686	58.33	1.0439	58.092	57.736	58.78	-0.23796					47	25	3	0	0	0	0.013887	3	6379	6379;6390;6402		180.93	31.868	1	3611800		+	32056	520	22167	22208	36695;36696;36697	36695					0.05302903520566815
KLAEMGAQI	9	Unmodified	_KLAEMGAQI_					0	0	0			REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant;REV__ENSG00000176986|ENST00000345254|SEC24C	REV__ENSG00000176986|ENST00000345254|SEC24C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.7611389160156	2	480.762778	959.511002	0.50937	0.00024489	-4.1119	-0.0019769	-3.6025	-0.001732	480.7607110029436	74.429	1.0135	74.154	73.917	74.931	-0.27573					49	23	3	0	0	0	0.42604	1	8795	8795		64.207	0.901	1	3648600	+		32057	27072;24740	22168	22209	36698	36698					0.02962711679822405
KLAENELTL	9	Unmodified	_KLAENELTL_					0	0	0			REV__nc|ENSG00000167702|Q96AC6|KIFC2	REV__nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7901000976562	2	515.792589	1029.57063	0.19521	0.00010069	0.71071	0.00036658	0.90591	0.00046726	515.7927762435289	52.454	1.0963	52.306	51.777	52.873	-0.14723					43	28	2	0	0	0	0.30449	1	5605	5605		75.043	0	1	1859100	+		32058	26182	22169	22210	36699	36699					0.057023058948516336
KLAENELTL	9	Unmodified	_KLAENELTL_					0	0	0			REV__nc|ENSG00000167702|Q96AC6|KIFC2	REV__nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.792589	1029.57063	-0.81427	-0.00041999	1.5099	0.00077879	0.69562	0.00035879	515.7929551783117	52.32	0.54111	52.201	51.939	52.48	-0.11876	-0.093617	0.00074548	NaN	75.043	28	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302990	+		32059	26182	22169	22210							0.057023058948516336
KLAENELTL	9	Unmodified	_KLAENELTL_					0	0	0			REV__nc|ENSG00000167702|Q96AC6|KIFC2	REV__nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.792589	1029.57063	-0.59054	-0.00030459	1.036	0.00053436	0.44546	0.00022976	515.7927517801073	52.584	0.68481	52.321	51.874	52.559	-0.26377	0.026182	0.00025662	NaN	75.043	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245800	+		32060	26182	22169	22210							0.057023058948516336
KLAENELTL	9	Unmodified	_KLAENELTL_					0	0	0			REV__nc|ENSG00000167702|Q96AC6|KIFC2	REV__nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.792589	1029.57063	-0.11713	-6.0416E-05	-0.70711	-0.00036472	-0.82424	-0.00042514	515.7923759974593	52.488	0.40389	52.298	52.106	52.51	-0.18982	0.0037993	-0.0015415	NaN	75.043	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163250	+		32061	26182	22169	22210							0.057023058948516336
KLAENYLN	8	Unmodified	_KLAENYLN_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.74786376953125	2	482.758549	963.502546	0.11473	5.5385E-05	0.050032	2.4153E-05	0.16476	7.9538E-05	482.7584799229049	58.706	0.76489	58.518	58.093	58.858	-0.18795					43	18	3	0	0	0	0.027866	1	6500	6500		38.806	0	1	833820	+		32062	20416	22170	22211	36700	36700					0.019334810348595965
KLAEPLRSK	9	Unmodified	_KLAEPLRSK_					0	0	0			REV__ENST00000480117.1_1_3:160600062-160753635:+|nuORF	REV__ENST00000480117.1_1_3:160600062-160753635:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3085327148438	2	521.324391	1040.63423	-1.5232	-0.00079409	1.1923	0.00062155	-0.33097	-0.00017254	521.3248903660322	30.902	0.58078	30.902	30.508	31.089	0					27	13	3	0	0	0	0.024495	1	2043	2043		19.997	0	1	200790	+		32063	25598	22171	22212	36701	36701					0.11553711122610366
KLAERGPQD	9	Unmodified	_KLAERGPQD_					0	0	0		ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7823486328125	2	507.272355	1012.53016	-1.21	-0.00061382	-4.1961	-0.0021286	-5.4061	-0.0027424	507.77214221037667	48.463	0.57545	48.187	47.966	48.542	-0.27598					21	15	2	0	0	0	0.02435	1	4847	4847		42.396	3.59	1	329320			32064	9930	22172	22213	36702	36702					0.024393842950985345
KLAERIPLY	9	Unmodified	_KLAERIPLY_					0	0	0			REV__ENSG00000103160|ENST00000219439|HSDL1	REV__ENSG00000103160|ENST00000219439|HSDL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3059692382812	2	551.834591	1101.65463	0.54893	0.00030292	-1.0164	-0.00056088	-0.46747	-0.00025797	551.834106360989	58.764	0.47596	58.522	58.3	58.776	-0.24165					19	11	2	0	0	0	0.024523	1	6453	6453		15.642	0.77694	1	254290	+		32065	21360	22173	22214	36703	36703					0.10786881782428281
KLAERMPPD	9	Unmodified	_KLAERMPPD_					0	0	0			REV__ENST00000420686.5_1_2:85836070-85838959:-|nuORF	REV__ENST00000420686.5_1_2:85836070-85838959:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.32861328125	2	528.778959	1055.54336	-0.68837	-0.000364	0.44327	0.00023439	-0.24511	-0.00012961	528.7791642460376	77.812	0.49081	77.812	77.551	78.042	0					18	11	2	0	0	0	0.024344	1	9634	9634		45.972	27.648	1	196070	+		32066	26299	22174	22215	36704	36704					0.017814990828355803
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	OPSCC_39_ClassI_Rep-1	1	487.7792053222656	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.437	1	24.437	23.937	24.937	0								0	0	0	0.014393	1	1064	1064		146.79	53.642	1				32067	1985	22175	22216	36705	36705					0.056580367233777906
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	OPSCC_39_ClassI_Rep-1	1	487.7789001464844	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.513	1	24.513	24.013	25.013	0								0	0	0	0.014459	1	1074	1074		141.52	42.891	1				32068	1985	22175	22216	36706	36706					0.056580367233777906
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MSMS	OPSCC_39_ClassI_Rep-1	1	487.7772521972656	2	487.779482	973.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.603	1	24.603	24.103	25.103	0								0	0	0	0.52157	1	1086	1086		50.034	8.6069	1				32069	1985	22175	22216	36707	36707					0.056580367233777906
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.77862548828125	2	487.779482	973.544411	-1.211	-0.00059072	0.74217	0.00036201	-0.46887	-0.00022871	487.77984046793887	24.511	1.0487	24.464	24.177	25.225	-0.047148					46	23	4	0	0	0	0.079716	3	1052	1052;1063;1076		117.81	40.964	1	2184800			32070	1985	22175	22216	36708;36709;36710	36708					0.056580367233777906
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7793884277344	2	487.779482	973.544411	-0.13876	-6.7684E-05	-0.28206	-0.00013758	-0.42082	-0.00020527	487.7793658216259	24.4	1.2272	24.478	24.23	25.457	0.078344					52	27	4	0	0	0	0.015512	3	1012	1003;1012;1025		159.28	60.647	1	2468000			32071	1985	22175	22216	36711;36712;36713	36712					0.056580367233777906
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7791442871094	2	487.779482	973.544411	-0.47729	-0.00023281	0.012341	6.0199E-06	-0.46495	-0.00022679	487.77929824256677	24.786	0.81502	24.571	24.257	25.072	-0.2151					40	18	4	0	0	0	0.023452	2	1115	1115;1130		146.79	44.012	1	1359700			32072	1985	22175	22216	36714;36715	36714					0.056580367233777906
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7795715332031	2	487.779482	973.544411	-0.10259	-5.0043E-05	0.018373	8.9618E-06	-0.084222	-4.1082E-05	487.77937924645454	24.55	0.7281	24.376	24.048	24.777	-0.17484					37	16	4	0	0	0	0.048057	2	1074	1074;1085		129.42	37.601	1	1182600			32073	1985	22175	22216	36716;36717	36716					0.056580367233777906
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.77923583984375	2	487.779482	973.544411	2.3163	0.0011299	-2.657	-0.001296	-0.34065	-0.00016616	487.7780553572366	24.62	0.95513	24.44	24.028	24.983	-0.18089					44	21	4	0	0	0	0.10464	2	1061	1061;1075		109.48	26.728	1	1099600			32074	1985	22175	22216	36718;36719	36718					0.056580367233777906
KLAFETKET	9	Unmodified	_KLAFETKET_					0	0	0			REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.777099609375	2	533.792589	1065.57063	-0.83646	-0.0004465	0.89182	0.00047605	0.055359	2.955E-05	533.7929388306187	46.715	0.68667	46.521	46.273	46.959	-0.19387					48	19	3	0	0	0	0.024359	1	4475	4475		56.434	12.317	1	1635100	+		32075	36948	22176	22217	36720	36720					0.04046305894848956
KLAFLEKEV	9	Unmodified	_KLAFLEKEV_					0	0	0			REV__nc|ENSG00000113407|P26639-2|TARS1	REV__nc|ENSG00000113407|P26639-2|TARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.79931640625	2	538.82115	1075.62775	0.27392	0.00014759	-0.33818	-0.00018222	-0.064262	-3.4625E-05	538.8207269736585	70.569	0.63244	70.569	70.316	70.948	0					29	14	3	0	0	0	0.024515	1	8528	8528		35.152	9.578	1	583940	+		32076	22067	22177	22218	36721	36721					0.09295773171243127
KLAFLEPHC	9	Unmodified	_KLAFLEPHC_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3113403320312	2	529.278595	1056.54264	-0.2701	-0.00014296	-1.2706	-0.00067251	-1.5407	-0.00081547	529.2771609370435	56.989	0.33226	57.084	56.911	57.243	0.095306					21	8	3	0	0	0	0.024294	1	6284	6284		55.504	2.5675	1	391160			32077	3668	22178	22219	36722	36722					0.016627044337838015
KLAFTMTIGR	10	Unmodified	_KLAFTMTIGR_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2675170898438	2	569.326076	1136.6376	-0.15044	-8.565E-05	3.1539	0.0017956	3.0034	0.0017099	569.8292892969663	65.634	0.41747	65.393	65.248	65.665	-0.24145					16	9	2	0	0	0	0.03519	1	7485	7485		16.717	0	1	112480	+		32078	25846	22179	22220	36723	36723					0.07474637904988413
KLAHLRAR	8	Unmodified	_KLAHLRAR_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2793273925781	2	482.811785	963.609017	0.094297	4.5528E-05	3.2522	0.0015702	3.3465	0.0016157	482.81301641381447	67.855	0.68658	67.874	67.59	68.276	0.018913					27	17	2	0	0	0	0.027866	1	7987	7987		17.365	5.1581	1	328790			32079	1432	22180	22221	36724	36724					0.12575701110688442
KLAHPYRAAVL	11	Unmodified	_KLAHPYRAAVL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8682861328125	2	619.87204	1237.72953	0.089003	5.517E-05	-4.3444	-0.002693	-4.2554	-0.0026378	619.8691214704253	104.81	0.62352	104.69	104.38	105	-0.12561					43	18	3	0	0	0	1.0521	1	13033	13033		24.519	1.4767	1	171530			32080	8927	22181	22222	36725	36725					0.1201706431365892
KLAIGVKAL	9	Unmodified	_KLAIGVKAL_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.81567	911.616788	-0.31168	-0.00014238	-0.96909	-0.0004427	-1.2808	-0.00058508	456.8164817863235	23.198	0.41825	23.137	22.889	23.308	-0.060862					17	9	3	0	0	0	0.023355	1	865	865		65.803	13.504	1	39906	+		32081	20842	22182	22223	36726	36726					0.15744415587607818
KLAISITTE	9	Unmodified	_KLAISITTE_					0	0	0			REV__ENSG00000178075|ENST00000358160|GRAMD1C	REV__ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265869140625	2	488.289682	974.564812	-0.87482	-0.00042717	0.55785	0.00027239	-0.31697	-0.00015477	488.2899481885603	56.052	0.30347	55.895	55.748	56.052	-0.15656					11	7	2	0	0	0	0.02435	1	6040	6040		42.396	8.2236	1	193660	+		32082	27163	22183	22224	36727	36727					0.07651207383173642
KLAKKQNTT	9	Unmodified	_KLAKKQNTT_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.3134155273438	2	516.314023	1030.61349	0.22709	0.00011725	-0.71687	-0.00037013	-0.48978	-0.00025288	516.313585376337	97.954	2.7122	97.952	97.189	99.901	-0.0020828					210	62	6	0	0	0	0.91321	1	12391	12391		31.53	2.3803	1	31857000	+		32083	26146	22184	22225	36728	36728					0.09941120742928433
KLAKKQNTT	9	Unmodified	_KLAKKQNTT_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3140258789062	2	516.314023	1030.61349	0.62813	0.00032431	-1.6446	-0.00084913	-1.0165	-0.00052482	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	0.87448	1	12163	12163		34.173	3.6689	1	32395000	+		32084	26146	22184	22225	36729	36729					0.09941120742928433
KLAKVRDN	8	Unmodified	_KLAKVRDN_					0	0	0			REV__nc|ENSG00000108312|P17480-2|UBTF	REV__nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2877502441406	2	472.287808	942.561064	-0.12415	-5.8633E-05	-0.45206	-0.0002135	-0.57621	-0.00027214	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	0.94517	2	11926	11926;11999		45.952	6.6991	1	53299000	+		32085	21724	22185	22226	36730;36731	36730					0.0874858239999412
KLALFVKIYSN	11	Unmodified	_KLALFVKIYSN_					0	0	0			REV__ENSG00000152778|ENST00000371795|IFIT5	REV__ENSG00000152778|ENST00000371795|IFIT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	648.3923950195312	2	648.389731	1294.76491	1.2288	0.00079673	3.4967	0.0022672	4.7255	0.003064	648.3919129843497	105.35	0.84909	105.35	104.93	105.78	0.00096893					59	28	4	0	0	0	1.0499	1	13475	13475		25.126	0.6068	1	1056100	+		32086	24863	22186	22227	36732	36732					0.12931682050816562
KLALITSGSA	10	Unmodified	_KLALITSGSA_					0	0	0			REV__ENSG00000145861|ENST00000652664|C1QTNF2	REV__ENSG00000145861|ENST00000652664|C1QTNF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.26385498046875	2	480.78985	959.565146	-0.41517	-0.00019961	1.9684	0.00094639	1.5532	0.00074678	480.7906944280251	29.043	0.9408	29.121	28.942	29.883	0.078344					46	23	3	0	0	0	0.03519	1	1681	1681		32.812	1.2826	1	469720	+		32087	24438	22187	22228	36733	36733					0.0837462710304635
KLALTWIGV	9	Unmodified	_KLALTWIGV_					0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2081604003906	2	500.813128	999.611703	-0.89987	-0.00045067	-4.0932	-0.0020499	-4.9931	-0.0025006	500.8109122231453	42.975	0.61488	42.749	42.41	43.025	-0.22597					33	15	3	0	0	0	0.023181	1	3923	3923		51.335	3.6781	1	125150	+		32088	27140	22188	22229	36734	36734					0.11188111724982264
KLALTWIGV	9	Unmodified	_KLALTWIGV_					0	0	0			REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	REV__ENST00000532045.5_1_11:834538-836571:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.813128	999.611703	-0.35529	-0.00017793	-4.1697	-0.0020882	-4.525	-0.0022662	500.81095386064453	42.953	0.3926	42.715	42.525	42.917	-0.23737	0.19373	-5.3106E-08	NaN	51.335	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182130	+		32089	27140	22188	22229							0.11188111724982264
KLANKIEK	8	Unmodified	_KLANKIEK_					0	0	0			REV__CON__P17697	REV__CON__P17697	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.3000183105469	2	472.300384	942.586216	1.1669	0.00055111	-0.93255	-0.00044044	0.23433	0.00011067	472.29972040983233	18.133	0.39262	17.977	17.805	18.197	-0.15637					18	7	4	0	0	0	1.0574	1	276	276		25.574	0	1	237330	+	+	32090	19555	22189	22230	36735	36735					0.112626372025602
KLANVGRKV	9	Unmodified	_KLANVGRKV_					0	0	0			REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2434997558594	2	492.819276	983.623999	0.16082	7.9257E-05	-0.54599	-0.00026907	-0.38517	-0.00018982	492.81855641946134	37.46	0.36201	37.46	37.305	37.667	0					14	9	2	0	0	0	0.024405	1	3080	3080		44.117	22.157	1	185970	+		32091	34919	22190	22231	36736	36736					0.1315314818804154
KLANVGRKV	9	Unmodified	_KLANVGRKV_					0	0	0			REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2432861328125	2	492.819276	983.623999	-0.3767	-0.00018564	-0.72831	-0.00035892	-1.105	-0.00054457	492.81865207028034	37.596	0.37164	37.628	37.45	37.822	0.032269					15	9	2	0	0	0	0.024292	1	3024	3024		58.782	19.976	1	143510	+		32092	34919	22190	22231	36737	36737					0.1315314818804154
KLANVTQMII	10	Unmodified	_KLANVTQMII_					0	0	0			REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8355712890625	2	565.833734	1129.65292	0.39662	0.00022442	2.5389	0.0014366	2.9355	0.001661	565.8351814446705	21.761	0.95173	21.584	21.162	22.113	-0.17721					54	19	5	0	0	0	1.089	1	724	724		34.173	2.2177	1	1719400	+		32093	32029	22191	22232	36738	36738					0.09327504702173428
KLAPICVK	8	Unmodified	_KLAPICVK_					0	0	0			REV__nc|ENSG00000075790|Q9UHQ4-2|BCAP29	REV__nc|ENSG00000075790|Q9UHQ4-2|BCAP29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.2478942871094	2	436.275324	870.536095	-0.061724	-2.6928E-05	-2.9756	-0.0012982	-3.0373	-0.0013251	436.2738185408739	34.053	0.31201	33.829	33.721	34.033	-0.22412					9	7	2	0	0	0	0.027866	1	2488	2488		25.45	6.0902	1	113320	+		32094	36473	22192	22233	36739	36739					0.0956481127304869
KLAPPAPSTL	10	Unmodified	_KLAPPAPSTL_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.78912353515625	2	497.800217	993.585882	0.87045	0.00043331	-2.3838	-0.0011867	-1.5133	-0.00075334	497.7992002565722	70.58	0.94597	70.287	70.163	71.109	-0.29292					32	25	2	0	0	0	0.03519	1	8484	8484		42.396	6.7778	1	452390	+		32095	29221	22193	22234	36740	36740					0.0888321748270755
KLAPPLVTL	9	Unmodified	_KLAPPLVTL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.3157958984375	2	476.315503	950.616454	1.5337	0.00073053	-1.8037	-0.00085911	-0.26995	-0.00012858	476.3145209883078	65.891	0.57847	65.891	65.566	66.145	0					49	14	4	0	0	0	0.016871	4	7824	7813;7824;7836;7849		152.47	49.697	1	8258300			32096	2165	22194	22235	36741;36742;36743;36744	36742					0.13916995867759852
KLAPPLVTL	9	Unmodified	_KLAPPLVTL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.31536865234375	2	476.315503	950.616454	0.29458	0.00014031	-0.4524	-0.00021548	-0.15782	-7.5173E-05	476.3151581549341	66.244	0.57885	65.962	65.634	66.213	-0.28148					49	14	4	0	0	0	0.014988	4	7866	7830;7842;7854;7866		161.9	62.523	1	8021800			32097	2165	22194	22235	36745;36746;36747;36748	36748					0.13916995867759852
KLAPPLVTL	9	Unmodified	_KLAPPLVTL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.3157043457031	2	476.315503	950.616454	0.11266	5.366E-05	-0.30575	-0.00014563	-0.19309	-9.1971E-05	476.31524060261324	65.922	0.5361	65.952	65.661	66.197	0.030106					49	13	4	0	0	0	0.014013	4	7758	7734;7745;7758;7771		166.78	51.324	1	6892000			32098	2165	22194	22235	36749;36750;36751;36752	36751					0.13916995867759852
KLAPPPKKA	9	Unmodified	_KLAPPPKKA_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.31329345703125	2	475.313295	948.612037	2.9896	0.001421	-3.004	-0.0014279	-0.014431	-6.8591E-06	475.31171655292644	18.653	0.58961	18.653	18.431	19.021	0					22	11	3	0	0	0	0.94809	1	315	315		29.15	8.6677	1	100190			32099	6982	22195	22236	36753	36753					0.1356753144484628
KLAPPPKKA	9	Unmodified	_KLAPPPKKA_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.313232421875	2	475.313295	948.612037	0.54909	0.00026099	-0.56353	-0.00026785	-0.014436	-6.8617E-06	475.31285272566294	18.85	0.58918	18.719	18.499	19.089	-0.13147					27	11	3	0	0	0	0.62163	1	328	328		51.335	30.854	1	104000			32100	6982	22195	22236	36754	36754					0.1356753144484628
KLAPPPKKA	9	Unmodified	_KLAPPPKKA_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.3129577636719	2	475.313295	948.612037	3.7635	0.0017889	-3.9503	-0.0018776	-0.1868	-8.8788E-05	475.3113218676603	18.805	0.54084	18.868	18.649	19.189	0.063307					22	10	4	0	0	0	0.75397	1	293	293		42.396	14.514	1	99379			32101	6982	22195	22236	36755	36755					0.1356753144484628
KLAPPSSTL	9	Unmodified	_KLAPPSSTL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.G204Vfs*2|1|0.17|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.L329Efs*22|1|0.16|ENSG00000120071|chr17:46171158-46171159|AA/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.27099609375	2	457.271293	912.528032	-0.30774	-0.00014072	0.21268	9.7252E-05	-0.095059	-4.3468E-05	457.27112729604295	43.345	0.65234	43.345	42.895	43.548	0					43	17	4	0	0	0	0.1158	2	4048	4048;4060		107.01	24.189	1	4301800			32102	3792	22196	22237	36756;36757	36756					0.06826955557301062
KLAPPSSTL	9	Unmodified	_KLAPPSSTL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.G204Vfs*2|1|0.17|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.L329Efs*22|1|0.16|ENSG00000120071|chr17:46171158-46171159|AA/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MSMS	OPSCC_39_ClassI_Rep-2	2	457.2710876464844	2	457.271293	912.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.455	1	43.316	42.816	43.816	-0.13929								0	0	0	0.13281	1	4052	4052		85.161	2.8558	1				32103	3792	22196	22237	36758	36758					0.06826955557301062
KLAPPSSTL	9	Unmodified	_KLAPPSSTL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.G204Vfs*2|1|0.17|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.L329Efs*22|1|0.16|ENSG00000120071|chr17:46171158-46171159|AA/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MSMS	OPSCC_39_ClassI_Rep-2	2	457.2713623046875	2	457.271293	912.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.526	1	43.385	42.885	43.885	-0.14108								0	0	0	0.13281	1	4064	4064		85.161	20.954	1				32104	3792	22196	22237	36759	36759					0.06826955557301062
KLAPPSSTL	9	Unmodified	_KLAPPSSTL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.G204Vfs*2|1|0.17|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.L329Efs*22|1|0.16|ENSG00000120071|chr17:46171158-46171159|AA/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.27093505859375	2	457.271293	912.528032	0.56442	0.00025809	-0.71799	-0.00032832	-0.15357	-7.0223E-05	457.27066452859947	43.361	0.65458	43.391	42.974	43.629	0.030823					50	17	5	0	0	0	0.1158	3	4001	3991;4001;4016		107.01	30.161	1	4371700			32105	3792	22196	22237	36760;36761;36762	36761					0.06826955557301062
KLAPQQLDI	9	Unmodified	_KLAPQQLDI_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3034057617188	2	513.303124	1024.5917	-0.17988	-9.2335E-05	-1.4873	-0.00076343	-1.6672	-0.00085577	513.302283357162	53.624	0.63791	53.624	53.372	54.01	0					41	17	5	0	0	0	0.32811	2	5819	5807;5819		71.877	10.846	1	2377200			32106	4590	22197	22238	36763;36764	36764					0.0803831599437217
KLAPQQLDI	9	Unmodified	_KLAPQQLDI_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.3026123046875	2	513.303124	1024.5917	-0.53632	-0.00027529	-0.95403	-0.00048971	-1.4904	-0.000765	513.3025019403294	53.731	0.57135	53.584	53.383	53.954	-0.14723					46	15	5	0	0	0	0.1158	2	5813	5799;5813		107.01	30.233	1	2466400			32107	4590	22197	22238	36765;36766	36766					0.0803831599437217
KLAPQQLDI	9	Unmodified	_KLAPQQLDI_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3035888671875	2	513.303124	1024.5917	-0.95778	-0.00049163	-0.4171	-0.0002141	-1.3749	-0.00070573	513.3027583267399	53.485	0.88648	53.58	53.336	54.222	0.095669					48	24	4	0	0	0	0.077175	3	5714	5701;5714;5726		118.74	26.998	1	2202800			32108	4590	22197	22238	36767;36768;36769	36768					0.0803831599437217
KLAQGNFTW	9	Unmodified	_KLAQGNFTW_					0	0	0			REV__ENSG00000213892|ENST00000587331|CEACAM16	REV__ENSG00000213892|ENST00000587331|CEACAM16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.78125	2	532.779816	1063.54508	-0.68908	-0.00036713	3.6672	0.0019538	2.9781	0.0015867	532.781667172757	57.209	1.3623	57.041	56.323	57.686	-0.1672					90	35	3	0	0	0	0.56934	1	6253	6253		54.776	0.053964	1	6750600	+		32109	28754	22198	22239	36770	36770					0.01584876163087756
KLAQGNFTW	9	Unmodified	_KLAQGNFTW_					0	0	0			REV__ENSG00000213892|ENST00000587331|CEACAM16	REV__ENSG00000213892|ENST00000587331|CEACAM16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.7809448242188	2	532.779816	1063.54508	-0.21875	-0.00011655	3.3017	0.0017591	3.0829	0.0016425	532.781508051497	57.182	1.2183	56.98	56.52	57.738	-0.20209					84	32	3	0	0	0	0.6504	1	6258	6258		49.442	3.4693	1	7281400	+		32110	28754	22198	22239	36771	36771					0.01584876163087756
KLAQIRHIY	9	Unmodified	_KLAQIRHIY_					0	0	0		ENST00000478678.5_1_6:32154995-32157692:-|nuORF;ENSG00000204304|ENST00000375050|PBX2	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.3109130859375	2	571.345658	1140.67676	0.24588	0.00014048	1.2241	0.00069941	1.47	0.00083989	571.3466224826503	74.774	0.16658	74.499	74.352	74.519	-0.27573					5	3	2	0	0	0	0.024506	1	8803	8803		30.504	13.139	1	112020			32111	10327	22199	22240	36772	36772					0.11205106250849894
KLAQIYPQ	8	Unmodified	_KLAQIYPQ_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.767822265625	2	480.779285	959.544017	-0.44851	-0.00021563	-0.73085	-0.00035138	-1.1794	-0.00056701	480.77868165214295	44.462	0.26847	44.357	44.239	44.508	-0.10468					9	6	2	0	0	0	0.027866	1	4139	4139		29.15	0	1	91811			32112	18433;6910	22200	22241	36773	36773					0.06262661794175983
KLAQIYPQ	8	Unmodified	_KLAQIYPQ_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7687072753906	2	480.779285	959.544017	-0.7181	-0.00034525	-0.18735	-9.0073E-05	-0.90545	-0.00043532	480.779356329148	44.639	0.33352	44.428	44.221	44.554	-0.21109					13	8	2	0	0	0	0.027866	1	4144	4144		37.159	0	1	146960			32113	18433;6910	22200	22241	36774	36774					0.06262661794175983
KLAQLKQQ	8	Unmodified	_KLAQLKQQ_					0	0	0			REV__nc|ENSG00000163931|P29401-2|TKT	REV__nc|ENSG00000163931|P29401-2|TKT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3056335449219	2	478.798009	955.581465	0.23226	0.00011121	-1.3771	-0.00065933	-1.1448	-0.00054813	478.7970753565009	31.889	0.55431	31.889	31.669	32.224	0					25	13	3	0	0	0	0.027866	1	2211	2211		31.955	1.4512	1	174340	+		32114	36858	22201	22242	36775	36775					0.10189753059796658
KLAQLKQQ	8	Unmodified	_KLAQLKQQ_					0	0	0			REV__nc|ENSG00000163931|P29401-2|TKT	REV__nc|ENSG00000163931|P29401-2|TKT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.798009	955.581465	-0.059101	-2.8297E-05	-0.80946	-0.00038757	-0.86856	-0.00041587	478.7973415217137	31.771	0.43999	31.783	31.583	32.023	0.011799	0.024675	0.00016813	NaN	24.203	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183980	+		32115	36858	22201	22242							0.10189753059796658
KLAQLKQQ	8	Unmodified	_KLAQLKQQ_					0	0	0			REV__nc|ENSG00000163931|P29401-2|TKT	REV__nc|ENSG00000163931|P29401-2|TKT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.798009	955.581465	-0.28021	-0.00013417	-0.66778	-0.00031973	-0.94799	-0.0004539	478.7970656014429	31.533	0.52251	31.602	31.445	31.967	0.06896	-0.15586	0.00030381	NaN	24.203	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166970	+		32116	36858	22201	22242							0.10189753059796658
KLAQRSQL	8	Unmodified	_KLAQRSQL_					0	0	0			REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.288818359375	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	0.99042	1	11946	11946		38.806	1.647	1	51888000	+		32117	24634	22202	22243	36776	36776					0.08748582400005489
KLAQRSQL	8	Unmodified	_KLAQRSQL_					0	0	0			REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.287841796875	2	472.287808	942.561064	-0.12415	-5.8633E-05	-0.45206	-0.0002135	-0.57621	-0.00027214	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	0.95679	1	11879	11879		44.117	1.6423	1	53299000	+		32118	24634	22202	22243	36777	36777					0.08748582400005489
KLAQYFAWFTE	11	Unmodified	_KLAQYFAWFTE_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.2999267578125	3	468.571322	1402.69214	-0.56207	-0.00026337	2.5779	0.0012079	2.0158	0.00094456	468.57243209584976	39.232	0.62382	39.068	38.795	39.419	-0.16459					38	16	3	0	0	0	0.024809	1	3300	3300		17.167	0	1	1027900	+		32119	27110	22203	22244	36778	36778					0.00689928257338579
KLAQYFAWFTE	11	Unmodified	_KLAQYFAWFTE_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.29949951171875	3	468.571322	1402.69214	-0.28846	-0.00013516	2.1397	0.0010026	1.8512	0.00086744	468.5722183909281	39.352	0.59765	39.126	38.874	39.472	-0.2257					44	15	4	0	0	0	0.024809	1	3286	3286		17.167	0	1	861810	+		32120	27110	22203	22244	36779	36779					0.00689928257338579
KLARFPSP	8	Unmodified	_KLARFPSP_					0	0	0			REV__ENSG00000266524|ENST00000580279|GDF10	REV__ENSG00000266524|ENST00000580279|GDF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.26824951171875	2	458.27417	914.533787	0.099169	4.5447E-05	-0.87015	-0.00039877	-0.77099	-0.00035332	458.273653406224	48.354	0.43233	48.167	47.902	48.334	-0.18684					16	11	2	0	0	0	0.027866	1	4786	4786		25.574	0	1	230490	+		32121	29142	22204	22245	36780	36780					0.07310098859613845
KLARVQQGGE	10	Unmodified	_KLARVQQGGE_					0	0	0			REV__ENST00000556170.5_1_14:75553702-75572727:-|nuORF	REV__ENST00000556170.5_1_14:75553702-75572727:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8312377929688	2	543.306729	1084.59891	-0.58634	-0.00031856	-0.36141	-0.00019635	-0.94775	-0.00051492	543.8081096828407	71.522	0.29653	71.533	71.319	71.616	0.010735					14	7	3	0	0	0	0.03519	1	8570	8570		9.1829	0	1	71281	+		32122	35028	22205	22246	36781	36781					0.05999048594821943
KLASFALEY	9	Unmodified	_KLASFALEY_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7379760742188	2	521.2844	1040.55425	-1.3415	-0.0006993	-0.65025	-0.00033896	-1.9917	-0.0010383	521.2844202420885	61.978	0.47334	61.978	61.643	62.117	0					21	12	2	0	0	0	0.023635	1	7181	7181		66.429	31.277	1	423000	+		32123	27255	22206	22247	36782	36782					0.035592247287468126
KLASGELYI	9	Unmodified	_KLASGELYI_					0	0	0			REV__KCNT2|p.Q361E|1|0.35|ENSG00000162687|chr1:196425892-196425892|G/C|missense_variant	REV__KCNT2|p.Q361E|1|0.35|ENSG00000162687|chr1:196425892-196425892|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2867736816406	2	497.2844	992.554247	-0.16826	-8.3675E-05	0.026491	1.3174E-05	-0.14177	-7.0501E-05	497.28431439566583	35.781	0.86925	35.568	35.115	35.985	-0.21246					62	23	4	0	0	0	0.72875	1	2754	2754		44.117	1.6423	1	3366600	+		32124	36176	22207	22248	36783	36783					0.05767224728754172
KLATGRGSS	9	Unmodified	_KLATGRGSS_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.24554443359375	2	438.748516	875.482479	-0.25429	-0.00011157	-3.0105	-0.0013209	-3.2648	-0.0014324	438.7471764755497	27.755	0.56657	27.742	27.427	27.994	-0.012983					25	14	2	0	0	0	0.024523	1	1547	1547		10.265	0	1	562130	+		32125	21909	22208	22249	36784	36784					0.039757300949077035
KLATPGKKAPL	11	Unmodified	_KLATPGKKAPL_					0	0	0			REV__ENSG00000196531|ENST00000454682|NACA	REV__ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3593139648438	2	562.363516	1122.71248	-0.84941	-0.00047768	-2.7374	-0.0015394	-3.5868	-0.0020171	562.36176829605	105.62	0.38317	105.49	105.35	105.73	-0.13099					20	13	2	0	0	0	1.0429	1	13165	13165		27.047	0.3544	1	165340	+		32126	28191	22209	22250	36785	36785					0.1560314370785818
KLAWEDQRYND	11	Unmodified	_KLAWEDQRYND_					0	0	0		B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant;ENSG00000176597|ENST00000326505|B3GNT5	B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	B3GNT5|p.A248Ifs*5|1|0.07|ENSG00000176597|chr3:183270539-183270540|-/ATAG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2921447753906	3	479.896757	1436.66844	0.46484	0.00022308	-1.4795	-0.00070999	-1.0146	-0.00048691	479.8959810518682	32.167	0.6043	31.931	31.611	32.216	-0.23667					48	13	5	0	0	0	0.02477	1	2161	2161		35.178	13.398	1	720360			32127	173	22210	22251	36786	36786					-0.03242537247092514
KLCDKISN	8	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))DKISN_	KLC(1)DKISN		KLC(69)DKISN		0	1	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2836608886719	2	489.257859	976.501166	-1.0481	-0.00051281	0.86542	0.00042341	-0.18271	-8.9391E-05	489.2579675443801	55.028	0.34963	55.126	54.982	55.332	0.098015					17	9	3	0	0	0	0.027866	1	6012	6012		68.787	28.009	1	171270			32128	9560	22211	22252	36787	36787	126				0.011975236744547146
KLCEDCYSV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EDCYSV_	KLC(0.854)EDC(0.146)YSV		KLC(7.7)EDC(-7.7)YSV		0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.7383422851562	2	558.738642	1115.46273	-0.43918	-0.00024539	0.12725	7.1101E-05	-0.31192	-0.00017428	558.7385532067375	60.851	1.2132	60.851	60.582	61.796	0					74	31	4	0	0	0	0.32811	1	7036	7036		71.877	22.436	2	5997000	+		32129	21261	22212	22253	36788	36788	271;272				-0.09038150022411173
KLCEDCYSV	9	Carbamidomethyl (C)	_KLCEDC(Carbamidomethyl (C))YSV_	KLC(0.156)EDC(0.844)YSV		KLC(-7.3)EDC(7.3)YSV		0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.73876953125	2	558.738642	1115.46273	-0.57249	-0.00031987	0.25286	0.00014128	-0.31963	-0.00017859	558.7386488190336	61.141	0.98018	60.927	60.567	61.547	-0.2134					64	25	3	0	0	0	0.45795	2	7044	7026;7044		62.107	17.73	2	6547800	+		32130	21261	22212	22253	36789;36790	36790	271;272				-0.09038150022411173
KLCEDCYSV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EDCYSV_	KLC(0.777)EDC(0.223)YSV		KLC(5.4)EDC(-5.4)YSV		0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.7382202148438	2	558.738642	1115.46273	-0.75086	-0.00041953	0.3813	0.00021305	-0.36956	-0.00020649	558.7386867080197	60.793	1.0247	60.864	60.566	61.59	0.071125					70	26	4	0	0	0	0.42604	1	6917	6917		64.207	7.4862	2	5795500	+		32131	21261	22212	22253	36791	36791	271;272				-0.09038150022411173
KLCEDCYSV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EDCYSV_	KLC(0.962)EDC(0.038)YSV		KLC(14)EDC(-14)YSV		0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.7387084960938	2	558.738642	1115.46273	-0.90099	-0.00050342	0.88574	0.0004949	-0.015252	-8.5218E-06	558.7389107463131	61.155	0.69963	60.979	60.714	61.413	-0.1761					42	16	3	0	0	0	0.56934	1	6835	6835		54.776	7.119	2	1745800	+		32132	21261	22212	22253	36792	36792	271;272				-0.09038150022411173
KLCEDCYSV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EDCYSV_					0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	558.738642	1115.46273	-0.43918	-0.00024539	0.12725	7.1101E-05	-0.31192	-0.00017428	558.7385532067375	60.851	1.2132	60.851	60.582	61.796	0	-0.10009	-0.00026499	NaN	71.877	74	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5997000	+		32133	21261	22212	22253			271;272				-0.09038150022411173
KLCEDCYSV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EDCYSV_					0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	558.738642	1115.46273	-0.57249	-0.00031987	0.25286	0.00014128	-0.31963	-0.00017859	558.7386488190336	61.141	0.98018	60.927	60.567	61.547	-0.2134	-0.023313	-0.00012462	NaN	71.877	64	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6547800	+		32134	21261	22212	22253			271;272				-0.09038150022411173
KLCEDCYSV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EDCYSV_					0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	558.738642	1115.46273	-0.75086	-0.00041953	0.3813	0.00021305	-0.36956	-0.00020649	558.7386867080197	60.793	1.0247	60.864	60.566	61.59	0.071125	-0.086881	1.8905E-05	NaN	71.877	70	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5795500	+		32135	21261	22212	22253			271;272				-0.09038150022411173
KLCEDCYSV	9	Carbamidomethyl (C)	_KLC(Carbamidomethyl (C))EDCYSV_					0	1	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	558.738642	1115.46273	-0.78762	-0.00044007	0.58701	0.00032799	-0.20061	-0.00011209	558.7388371422732	61.314	0.73743	61.056	60.809	61.547	-0.25725	0.10556	0.00024878	NaN	71.877	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1905300	+		32136	21261	22212	22253			271;272				-0.09038150022411173
KLCKALKVL	9	Unmodified	_KLCKALKVL_					0	0	0			REV__nc|ENSG00000180764|A2A3N6|PIPSL	REV__nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.74658203125	2	508.338455	1014.66236	-0.2672	-0.00013583	-3.6441	-0.0018525	-3.9113	-0.0019883	508.3363554787428	29.903	0.59767	29.753	29.542	30.14	-0.14952					18	13	2	0	0	0	0.024523	1	1877	1877		21.96	7.8228	1	43318	+		32137	33425	22213	22254	36793	36793					0.1556131777833798
KLCNEPGE	8	Unmodified	_KLCNEPGE_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.63604736328125	2	445.207835	888.401117	-0.21857	-9.7309E-05	-3.2699	-0.0014558	-3.4885	-0.0015531	445.2063273806286	40.573	0.39654	40.348	40.114	40.511	-0.225					17	10	2	0	0	0	0.027866	1	3479	3479		25.574	0	1	188450	+		32138	28437	22214	22255	36794	36794					-0.04754713659360732
KLCNEYNF	8	Unmodified	_KLCNEYNF_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2715454101562	2	515.73676	1029.45897	-0.6251	-0.00032239	3.5695	0.0018409	2.9444	0.0015185	515.7386087866511	49.189	1.2723	49.089	48.219	49.491	-0.1008					48	33	2	0	0	0	0.027866	1	4916	4916		27.882	0	1	283170	+		32139	25641	22215	22256	36795	36795					-0.05458451733966285
KLCNHLCL	8	Unmodified	_KLCNHLCL_					0	0	0		RAD54B|p.P595L|1|0.08|ENSG00000197275|chr8:94391634-94391634|G/A|missense_variant	RAD54B|p.P595L|1|0.08|ENSG00000197275|chr8:94391634-94391634|G/A|missense_variant	RAD54B|p.P595L|1|0.08|ENSG00000197275|chr8:94391634-94391634|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7896423339844	2	472.24624	942.477928	-0.19986	-9.4384E-05	3.8122	0.0018003	3.6124	0.0017059	472.2479751668235	48.04	0.52491	47.887	47.702	48.227	-0.153					23	15	2	0	0	0	0.027866	1	4868	4868		35.201	0	1	486250			32140	19024	22216	22257	36796	36796					0.004388063561236777
KLCNLFHCT	9	Unmodified	_KLCNLFHCT_					0	0	0			REV__ELP3-MYO5C|1|fusion;REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.296142578125	2	539.762255	1077.50996	-0.76833	-0.00041471	3.5926	0.0019392	2.8243	0.0015245	539.7642085603852	65.673	0.38353	65.4	65.297	65.681	-0.27282					16	10	2	0	0	0	0.024323	1	7797	7797		35.618	0	1	286450	+		32141	23011;19748	22217	22258	36797	36797					-0.025698259607224827
KLCNLLIDV	9	Unmodified	_KLCNLLIDV_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2	nc|ENSG00000103723|Q13367-3|AP3B2	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.7755737304688	2	515.801903	1029.58925	-0.25091	-0.00012942	3.7609	0.0019399	3.51	0.0018104	515.8038221845808	25.002	0.42977	25.08	24.823	25.253	0.078762					17	9	2	0	0	0	0.024374	1	1072	1072		40.778	0	1	127920			32142	2525	22218	22259	36798	36798					0.07564144265052164
KLCRIVIID	9	Unmodified	_KLCRIVIID_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2586059570312	2	536.830995	1071.64744	-0.66342	-0.00035615	-2.1414	-0.0011496	-2.8048	-0.0015057	536.8291691612569	53.154	0.82932	53.154	52.789	53.618	0					35	22	3	0	0	0	0.02435	1	5792	5792		34.173	0	1	207270			32143	6159	22219	22260	36799	36799					0.11447825910317988
KLCRIVIID	9	Unmodified	_KLCRIVIID_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2974243164062	2	536.830995	1071.64744	0.40487	0.00021735	-3.2938	-0.0017682	-2.8889	-0.0015509	536.8288160875903	74.69	0.49036	74.69	74.424	74.914	0					28	11	3	0	0	0	0.024292	1	9116	9116		49.442	1.7842	1	625530			32144	6159	22219	22260	36800	36800					0.11447825910317988
KLCSIALVP	9	Unmodified	_KLCSIALVP_					0	0	0			REV__ENST00000519374.5_1_5:172461464-172461497:+|nuORF	REV__ENST00000519374.5_1_5:172461464-172461497:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2878112792969	2	472.285889	942.557224	0.20114	9.4994E-05	3.3876	0.0015999	3.5887	0.0016949	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	0.92825	1	12067	12067		30.504	0.6621	1	52660000	+		32145	34258	22220	22261	36801	36801					0.08364776581902333
KLCSSHVIS	9	Unmodified	_KLCSSHVIS_					0	0	0			REV__ENSG00000256294|ENST00000262894|ZNF225	REV__ENSG00000256294|ENST00000262894|ZNF225	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7768859863281	2	487.260402	972.506251	-0.44708	-0.00021785	-0.087663	-4.2715E-05	-0.53475	-0.00026056	487.26016394523276	41.824	0.36065	41.847	41.597	41.958	0.023006					12	9	2	0	0	0	0.023635	1	3713	3713		76.774	19.321	1	42803	+		32146	29078	22221	22262	36802	36802					0.018898275370588635
KLCTHKNWCN	10	Unmodified	_KLCTHKNWCN_					0	0	0		nc|ENSG00000145623|Q99650-2|OSMR;ENSG00000145623|ENST00000274276|OSMR	nc|ENSG00000145623|Q99650-2|OSMR	nc|ENSG00000145623|Q99650-2|OSMR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2315979003906	3	416.198837	1245.57468	0.35013	0.00014572	3.9929	0.0016618	4.343	0.0018076	416.53586347983315	21.035	0.34307	20.839	20.681	21.024	-0.19577					10	6	2	0	0	0	0.03519	1	604	604		32.751	0.71641	1	15876			32147	5822	22222	22263	36803	36803					-0.038282511547095055
KLCVHLVPH	9	Unmodified	_KLCVHLVPH_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7846069335938	2	523.302404	1044.59026	0.65322	0.00034183	1.6533	0.00086518	2.3065	0.001207	523.3031277895468	18.28	0.69014	18.124	17.805	18.495	-0.15637					31	13	4	0	0	0	0.024517	1	320	320		35.201	13.241	1	656520	+		32148	36747	22223	22264	36804	36804					0.06974403424624143
KLDADSTANY	10	Unmodified	_KLDADSTANY_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7730712890625	2	549.259111	1096.50367	0.020885	1.1471E-05	2.6291	0.001444	2.6499	0.0014555	549.2599867475323	35.755	0.96259	35.556	35.288	36.251	-0.19829					39	26	2	0	0	0	0.03519	1	2694	2694		51.193	0	1	630120	+		32149	19813	22224	22265	36805	36805					-0.04072349386888163
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2684326171875	2	489.26875	976.522947	0.74912	0.00036652	-1.314	-0.00064291	-0.56491	-0.00027639	489.2680465910452	58.951	0.84099	58.951	58.679	59.52	0					50	22	3	0	0	0	0.013065	2	6725	6707;6725		171.53	50.911	1	3646700			32150	6454	22225	22266	36806;36807	36807					0.03374651694673503
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2689208984375	2	489.26875	976.522947	1.7429	0.00085273	-2.2398	-0.0010958	-0.49689	-0.00024311	489.26755343677775	59.179	0.75417	58.992	58.721	59.476	-0.18705					48	20	3	0	0	0	0.041068	1	6709	6709		132.76	45.061	1	4101900			32151	6454	22225	22266	36808	36808					0.03374651694673503
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.26873779296875	2	489.26875	976.522947	0.11669	5.7093E-05	-0.59194	-0.00028962	-0.47525	-0.00023252	489.26836393562496	58.819	0.79628	58.905	58.63	59.426	0.085682					49	21	3	0	0	0	0.014454	2	6624	6606;6624		185.55	73.901	1	3524100			32152	6454	22225	22266	36809;36810	36810					0.03374651694673503
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.269287109375	2	489.26875	976.522947	-0.30735	-0.00015038	0.57835	0.00028297	0.27099	0.00013259	489.2688820155949	59.226	0.80495	59.038	58.779	59.584	-0.18795					56	19	5	0	0	0	0.016542	3	6539	6528;6539;6552		154.12	66.422	1	3008600			32153	6454	22225	22266	36811;36812;36813	36812					0.03374651694673503
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2710876464844	2	489.26875	976.522947	0.48715	0.00023835	-0.33205	-0.00016246	0.1551	7.5885E-05	489.2684726965194	59.156	0.91446	58.975	58.71	59.624	-0.18134					54	22	5	0	0	0	0.048057	3	6534	6522;6534;6548		129.42	41.725	1	3221500			32154	6454	22225	22266	36814;36815;36816	36815					0.03374651694673503
KLDAFVEGV	9	Unmodified	_KLDAFVEGV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2728576660156	2	489.26875	976.522947	0.74751	0.00036574	-0.72144	-0.00035298	0.026069	1.2755E-05	489.26825259675616	59.272	0.72519	59.03	58.738	59.463	-0.24165					47	17	4	0	0	0	0.030064	3	6525	6525;6535;6547		141.52	64.203	1	3017100			32155	6454	22225	22266	36817;36818;36819	36817					0.03374651694673503
KLDAQSLNLSQ	11	Unmodified	_KLDAQSLNLSQ_					0	0	0		ENSG00000154710|ENST00000284957|RABGEF1;nc|ENSG00000154710|Q9UJ41-4|RABGEF1;nc|ENSG00000154710|Q9UJ41-3|RABGEF1	ENSG00000154710|ENST00000284957|RABGEF1	ENSG00000154710|ENST00000284957|RABGEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	608.2930297851562	2	608.830234	1215.64592	-1.1216	-0.00068288	-1.7446	-0.0010621	-2.8662	-0.001745	608.8321290469823	60.442	0.36514	60.266	60.156	60.521	-0.1761					14	8	3	0	0	0	0.024723	1	6748	6748		17.468	0	1	79366			32156	6427	22226	22267	36820	36820					0.04671863355270034
KLDDIVQHI	9	Unmodified	_KLDDIVQHI_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8064575195312	2	540.806031	1079.59751	-0.83867	-0.00045356	0.8381	0.00045325	-0.00056441	-3.0524E-07	540.8061123399344	52.729	1.1466	52.729	52.085	53.232	0					78	29	4	0	0	0	0.18694	2	5649	5649;5661		91.265	34.669	1	6202200			32157	1583	22227	22268	36821;36822	36821					0.060894145060501614
KLDDIVQHI	9	Unmodified	_KLDDIVQHI_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8067626953125	2	540.806031	1079.59751	-0.45475	-0.00024593	0.57089	0.00030874	0.11614	6.281E-05	540.805997030007	52.816	1.2888	52.669	51.95	53.239	-0.14723					72	33	4	0	0	0	0.14087	2	5637	5637;5648		101.46	33.966	1	5508100			32158	1583	22227	22268	36823;36824	36823					0.060894145060501614
KLDDIVQHI	9	Unmodified	_KLDDIVQHI_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8060302734375	2	540.806031	1079.59751	-0.53984	-0.00029195	0.35663	0.00019287	-0.18321	-9.9078E-05	540.8058641429475	52.599	0.99752	52.691	52.16	53.157	0.091938					73	25	4	0	0	0	0.15193	2	5558	5558;5579		99.013	36.906	1	8001900			32159	1583	22227	22268	36825;36826	36825					0.060894145060501614
KLDDLKIPSA	10	Unmodified	_KLDDLKIPSA_					0	0	0			REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3125	2	550.321514	1098.62847	-0.43508	-0.00023944	1.6409	0.000903	1.2058	0.00066356	550.3222194965849	32.175	0.59021	32.017	31.694	32.284	-0.15772					30	13	3	0	0	0	0.03519	1	2166	2166		30.318	12.953	1	263130	+		32160	27690	22228	22269	36827	36827					0.08310567820285542
KLDDYVYYV	9	Unmodified	_KLDDYVYYV_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.2922973632812	2	589.292422	1176.57029	-0.92062	-0.00054251	0.67008	0.00039487	-0.25053	-0.00014764	589.2926263543454	66.19	0.39401	66.19	65.913	66.307	0					27	10	4	0	0	0	0.23085	1	7880	7880		84.916	15.288	1	1368200			32161	8087	22229	22270	36828	36828					-0.010931138250271033
KLDEHIAYL	9	Unmodified	_KLDEHIAYL_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.3005981445312	2	551.300581	1100.58661	-1.1975	-0.00066016	0.88487	0.00048783	-0.31259	-0.00017233	551.3006951921232	50.972	0.72575	51.059	50.785	51.511	0.087006					46	19	3	0	0	0	0.077175	1	5317	5317		118.74	55.437	1	2529900			32162	9585	22230	22271	36829	36829					0.04034012131751297
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2745971679688	2	541.274229	1080.53391	-1.2391	-0.0006707	0.94866	0.00051349	-0.29045	-0.00015721	541.2746704936981	55.413	1.104	55.197	54.857	55.961	-0.21551					69	30	3	0	0	0	0.15388	1	5940	5940		98.582	21.808	1	4329700			32163	9922	22231	22272	36830	36830					-0.0031399072172462184
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	541.274229	1080.53391	0.052036	2.8166E-05	-0.26382	-0.0001428	-0.21179	-0.00011463	541.2738718122631	55.231	0.73506	55.231	54.944	55.679	0	0.067451	-0.00096046	NaN	98.582	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1847000			32164	9922	22231	22272							-0.0031399072172462184
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	541.274229	1080.53391	-0.70715	-0.00038276	0.73077	0.00039555	0.023629	1.279E-05	541.2744129600312	55.322	0.666	55.172	54.894	55.56	-0.15036	0.0083365	0.00011624	NaN	98.582	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1843500			32165	9922	22231	22272							-0.0031399072172462184
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	541.274229	1080.53391	-1.3245	-0.00071694	1.3278	0.00071873	0.0033133	1.7934E-06	541.2747655983895	54.969	0.67657	55.067	54.807	55.484	0.098015	-0.096361	0.0007626	NaN	98.582	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1858900			32166	9922	22231	22272							-0.0031399072172462184
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.274229	1080.53391	-1.1326	-0.00061303	0.70286	0.00038044	-0.42971	-0.00023259	541.2746901841335	55.305	1.2191	55.159	54.724	55.943	-0.14609	-0.0050193	8.6018E-05	NaN	98.582	80	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4365000			32167	9922	22231	22272							-0.0031399072172462184
KLDESIYDV	9	Unmodified	_KLDESIYDV_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.274229	1080.53391	-0.42886	-0.00023213	0.1078	5.8351E-05	-0.32106	-0.00017378	541.274218167571	55.386	0.97536	55.155	54.891	55.867	-0.23087	-0.0081529	-0.00055816	NaN	98.582	53	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5208200			32168	9922	22231	22272							-0.0031399072172462184
KLDETGNSL	9	Unmodified	_KLDETGNSL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7507629394531	2	488.750921	975.48729	-0.54324	-0.00026551	0.35268	0.00017237	-0.19055	-9.3133E-05	488.75100864397854	34.898	0.82591	34.898	34.629	35.455	0					50	21	3	0	0	0	0.086035	3	2648	2637;2648;2661		115.49	21.488	1	3196200			32169	18271	22232	22273	36831;36832;36833	36832					-0.0014343055297558749
KLDETGNSL	9	Unmodified	_KLDETGNSL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.75048828125	2	488.750921	975.48729	-0.62727	-0.00030658	0.4671	0.00022829	-0.16018	-7.8286E-05	488.75104006967166	34.74	0.79836	34.718	34.435	35.233	-0.021767					47	20	3	0	0	0	0.086035	3	2591	2591;2602;2615		115.49	26.851	1	3102800			32170	18271	22232	22273	36834;36835;36836	36834					-0.0014343055297558749
KLDETGNSL	9	Unmodified	_KLDETGNSL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7508239746094	2	488.750921	975.48729	-1.0084	-0.00049285	0.89247	0.00043619	-0.11592	-5.6655E-05	488.75123527110173	34.693	0.90559	34.743	34.329	35.235	0.050255					50	23	3	0	0	0	0.071379	2	2550	2550;2562		120.87	27.798	1	3105800			32171	18271	22232	22273	36837;36838	36837					-0.0014343055297558749
KLDETNNTL	9	Unmodified	_KLDETNNTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2692260742188	2	524.269478	1046.5244	-1.3008	-0.00068198	0.31206	0.0001636	-0.98877	-0.00051838	524.2696793598391	35.183	2.1387	35.183	34.867	37.005	0					145	57	6	0	0	0	0.013946	6	2664	2664;2675;2687;2699;2712;2725		195.05	65.625	1	42528000			32172	18383	22233	22274	36839;36840;36841;36842;36843;36844	36839					0.0030024099276033667
KLDETNNTL	9	Unmodified	_KLDETNNTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2692260742188	2	524.269478	1046.5244	-1.1346	-0.00059485	0.16789	8.8018E-05	-0.96673	-0.00050683	524.2696179229571	35.018	2.2735	34.996	34.634	36.907	-0.021763					163	60	6	0	0	0	0.012006	6	2685	2625;2635;2647;2659;2672;2685		228.31	64.034	1	41212000			32173	18383	22233	22274	36845;36846;36847;36848;36849;36850	36850					0.0030024099276033667
KLDETNNTL	9	Unmodified	_KLDETNNTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.269287109375	2	524.269478	1046.5244	-0.47464	-0.00024884	-0.53291	-0.00027939	-1.0075	-0.00052823	524.2692709294586	35.023	2.1741	35.067	34.675	36.849	0.04406					168	58	6	0	0	0	0.014738	7	2602	2582;2591;2602;2614;2626;2640;2652		209.19	55.077	1	41004000			32174	18383	22233	22274	36851;36852;36853;36854;36855;36856;36857	36853					0.0030024099276033667
KLDETNNTL	9	Unmodified	_KLDETNNTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2695922851562	2	524.269478	1046.5244	-0.38278	-0.00020068	-0.5019	-0.00026313	-0.88468	-0.00046381	524.2691738782264	35.258	1.056	35.042	34.753	35.809	-0.21555					92	27	5	0	0	0	0.016249	4	2668	2656;2668;2680;2694		155.58	48.902	1	17641000			32175	18383	22233	22274	36858;36859;36860;36861	36859					0.0030024099276033667
KLDETNNTL	9	Unmodified	_KLDETNNTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2694091796875	2	524.269478	1046.5244	-0.43405	-0.00022756	-0.36965	-0.0001938	-0.8037	-0.00042136	524.2692473758682	35.271	1.2905	35.058	34.361	35.651	-0.21246					93	32	5	0	0	0	0.013719	4	2661	2649;2661;2674;2687		168.26	50.447	1	18366000			32176	18383	22233	22274	36862;36863;36864;36865	36863					0.0030024099276033667
KLDETNNTL	9	Unmodified	_KLDETNNTL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2694091796875	2	524.269478	1046.5244	-0.39653	-0.00020789	-0.51494	-0.00026997	-0.91147	-0.00047785	524.2691759731676	35.142	2.0264	34.955	34.681	36.707	-0.18675					123	53	6	0	0	0	0.013337	4	2650	2625;2637;2650;2664		176.44	43.174	1	18458000			32177	18383	22233	22274	36866;36867;36868;36869	36868					0.0030024099276033667
KLDFCSALSS	10	Carbamidomethyl (C)	_KLDFC(Carbamidomethyl (C))SALSS_	KLDFC(1)SALSS		KLDFC(51)SALSS		0	1	0		nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2757568359375	2	564.273706	1126.53286	-0.41963	-0.00023679	4.3826	0.002473	3.963	0.0022362	564.2758789382433	22.176	0.52015	21.991	21.715	22.236	-0.18539					22	10	3	0	0	0	0.94316	1	763	763		51.193	18.38	1	156410			32178	847	22234	22275	36870	36870	13				-0.025345283622755232
KLDFCSALSS	10	Carbamidomethyl (C)	_KLDFC(Carbamidomethyl (C))SALSS_					0	1	0		nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.273706	1126.53286	0.35396	0.00019973	3.3783	0.0019063	3.7322	0.002106	564.2754879526245	21.998	0.47489	21.809	21.58	22.055	-0.18894	-0.099815	-0.00082052	NaN	51.193	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101560			32179	847	22234	22275			13				-0.025345283622755232
KLDFCSALSS	10	Carbamidomethyl (C)	_KLDFC(Carbamidomethyl (C))SALSS_					0	1	0		nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.273706	1126.53286	-0.40314	-0.00022748	4.3157	0.0024352	3.9126	0.0022078	564.2759114410447	22.128	0.53054	21.926	21.663	22.194	-0.20199	0.0178	0.00023742	NaN	51.193	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162920			32180	847	22234	22275			13				-0.025345283622755232
KLDFFAKDS	9	Unmodified	_KLDFFAKDS_					0	0	0			REV__ENSG00000133812|ENST00000256190|SBF2	REV__ENSG00000133812|ENST00000256190|SBF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.3030395507812	2	535.779482	1069.54441	-0.40025	-0.00021445	0.042958	2.3016E-05	-0.35729	-0.00019143	535.7794584792232	46.388	0.9542	46.388	45.818	46.772	0					68	26	4	0	0	0	0.024427	1	4529	4529		42.396	6.7778	1	6547000	+		32181	23398	22235	22276	36871	36871					0.0124203672337444
KLDFSRPQ	8	Unmodified	_KLDFSRPQ_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7826232910156	2	495.771991	989.529429	-0.040842	-2.0248E-05	1.0449	0.00051804	1.0041	0.0004978	495.7718420341276	50.011	0.49363	49.905	49.671	50.165	-0.10558					30	12	4	0	0	0	0.027866	1	5076	5076		18.324	0	1	246370	+		32182	22318	22236	22277	36872	36872					0.03424589646044751
KLDGKFYAV	9	Unmodified	_KLDGKFYAV_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2590942382812	2	520.792392	1039.57023	-0.59012	-0.00030733	1.6017	0.00083415	1.0116	0.00052682	521.2933293767032	85.062	0.83356	85.004	84.563	85.397	-0.057617					25	19	2	0	0	0	0.024294	1	10625	10625		55.504	14.726	1	96231			32183	2551	22237	22278	36873	36873					0.05202930965651831
KLDGKFYAV	9	Unmodified	_KLDGKFYAV_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.792392	1039.57023	0.9909	0.00051605	1.1537	0.00060082	2.1446	0.0011169	520.7938796242869	85.222	2.2483	85.072	84.582	86.83	-0.14967	-0.050643	-0.00088785	NaN	37.159	75	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97255			32184	2551	22237	22278							0.05202930965651831
KLDGKFYAV	9	Unmodified	_KLDGKFYAV_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.792392	1039.57023	0.5783	0.00030118	0.98177	0.0005113	1.5601	0.00081247	521.2929849566235	85.349	2.2538	85.212	84.533	86.787	-0.13753	0.089012	-0.0010669	NaN	37.159	78	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103880			32185	2551	22237	22278							0.05202930965651831
KLDHKLTW	8	Unmodified	_KLDHKLTW_					0	0	0			REV__ENST00000512677.1_1_3:130403102-130409371:-|nuORF	REV__ENST00000512677.1_1_3:130403102-130409371:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2618408203125	2	520.798009	1039.58147	-0.86307	-0.00044948	-2.7879	-0.0014519	-3.6509	-0.0019014	520.7963768605914	22.269	0.88119	22.269	22.106	22.987	0					33	18	2	0	0	0	0.027866	1	827	827		29.15	14.285	1	114770	+		32186	28184	22238	22279	36874	36874					0.06325753059786621
KLDISFFIS	9	Unmodified	_KLDISFFIS_					0	0	0			REV__nc|ENSG00000079739|P36871-2|PGM1	REV__nc|ENSG00000079739|P36871-2|PGM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2586059570312	2	535.30005	1068.58555	-1.1395	-0.00060996	-2.7906	-0.0014938	-3.9301	-0.0021038	535.2985669855294	53.594	0.83744	53.446	52.91	53.748	-0.14724					48	22	3	0	0	0	0.024397	1	5787	5787		24.519	0	1	1093100	+		32187	36482	22239	22280	36875	36875					0.05399797762856906
KLDITNNP	8	Unmodified	_KLDITNNP_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2664794921875	2	457.750724	913.486896	-0.55693	-0.00025494	1.0898	0.00049887	0.53291	0.00024394	457.7516626949464	28.701	0.3466	28.532	28.38	28.727	-0.16897					10	7	2	0	0	0	0.027866	1	1685	1685		27.882	11.409	1	19711			32188	8032	22240	22281	36876	36876					0.026691945178072274
KLDKIMNMKE	10	Unmodified	_KLDKIMNMKE_					0	0	0		nc|ENSG00000148835|Q15542-2|TAF5;ENSG00000148835|ENST00000369839|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2315368652344	3	417.226281	1248.65701	0.060324	2.5169E-05	3.8575	0.0016095	3.9179	0.0016346	417.22780296986053	21.494	0.68188	21.303	20.98	21.662	-0.19072					31	13	4	0	0	0	0.03519	1	640	640		36.318	16.287	1	69860			32189	6053	22241	22282	36877	36877					0.04263226133571152
KLDLLSAEK	9	Unmodified	_KLDLLSAEK_					0	0	0			REV__ENST00000536573.6_1_12:1213918-1353789:+|nuORF	REV__ENST00000536573.6_1_12:1213918-1353789:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.8031921386719	2	508.802957	1015.59136	0.010802	5.496E-06	-0.59545	-0.00030297	-0.58465	-0.00029747	508.8026379305707	36.906	0.90939	36.843	36.47	37.379	-0.063389					61	23	4	0	0	0	0.057894	1	2948	2948		125.81	0	1	5448500	+		32190	20704	22242	22283	36878	36878					0.08418896274520193
KLDLLSAEK	9	Unmodified	_KLDLLSAEK_					0	0	0			REV__ENST00000536573.6_1_12:1213918-1353789:+|nuORF	REV__ENST00000536573.6_1_12:1213918-1353789:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.80291748046875	2	508.802957	1015.59136	0.2989	0.00015208	-0.75901	-0.00038619	-0.46012	-0.00023411	508.8025369565805	37.061	1.1961	36.868	36.455	37.651	-0.193					98	30	6	0	0	0	0.043667	1	2938	2938		131.03	4.7888	1	9275900	+		32191	20704	22242	22283	36879	36879					0.08418896274520193
KLDLRMKI	8	Unmodified	_KLDLRMKI_					0	0	0		nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80291748046875	2	508.817887	1015.62122	0.13351	6.7934E-05	-0.99803	-0.00050781	-0.86451	-0.00043988	508.81705353847065	36.842	0.63084	36.649	36.335	36.966	-0.193					30	15	3	0	0	0	0.027866	1	2938	2938		108.09	0	1	474510			32192	18333	22243	22284	36880	36880					0.11403556738866882
KLDLSLLEL	9	Unmodified	_KLDLSLLEL_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.790283203125	2	522.320983	1042.62741	-0.1488	-7.7722E-05	-0.19728	-0.00010305	-0.34609	-0.00018077	522.320423123897	70.779	0.81407	70.79	70.465	71.279	0.010735					34	19	3	0	0	0	0.024427	1	8457	8457		51.335	5.3835	1	773260	+		32193	22873	22244	22285	36881	36881					0.10780353451377778
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.797607421875	2	515.798206	1029.58186	-0.38616	-0.00019918	0.30256	0.00015606	-0.083594	-4.3118E-05	515.7982400165928	26.62	0.82008	26.62	26.324	27.144	0					50	19	4	0	0	0	0.056725	2	1377	1377;1388		126.24	40.381	1	1900400			32194	3614	22245	22286	36882;36883	36882					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7979736328125	2	515.798206	1029.58186	-0.51541	-0.00026585	0.63386	0.00032694	0.11845	6.1096E-05	515.7984181641405	26.64	0.94353	26.617	26.324	27.267	-0.023087					52	23	4	0	0	0	0.056725	2	1379	1366;1379		126.24	27.661	1	2097900			32195	3614	22245	22286	36884;36885	36885					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7977905273438	2	515.798206	1029.58186	-0.9309	-0.00048016	0.71035	0.0003664	-0.22055	-0.00011376	515.798524311127	26.48	0.82076	26.561	26.21	27.031	0.081293					42	18	3	0	0	0	0.042502	2	1303	1303;1315		131.62	45.754	1	2057100			32196	3614	22245	22286	36886;36887	36886					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.7981567382812	2	515.798206	1029.58186	-0.76881	-0.00039655	-2.1831	-0.001126	-2.9519	-0.0015226	515.798295798845	26.806	1.2974	26.568	26.302	27.6	-0.23809					74	30	4	0	0	0	0.087669	3	1427	1417;1427;1441		114.89	24.294	1	1768100			32197	3614	22245	22286	36888;36889;36890	36889					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.798095703125	2	515.798206	1029.58186	-0.2208	-0.00011389	-2.5175	-0.0012985	-2.7383	-0.0014124	515.7979770977596	26.564	1.111	26.396	26.119	27.23	-0.16816					82	26	5	0	0	0	0.042502	3	1393	1379;1393;1402		131.62	16.28	1	1485500			32198	3614	22245	22286	36891;36892;36893	36892					0.06825127989009161
KLDNQVSKV	9	Unmodified	_KLDNQVSKV_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.7982177734375	2	515.798206	1029.58186	-0.60688	-0.00031303	-2.3892	-0.0012323	-2.9961	-0.0015454	515.7982155305219	26.721	0.99371	26.558	26.307	27.301	-0.16331					63	23	4	0	0	0	0.042502	2	1379	1379;1391		131.62	26.77	1	1998600			32199	3614	22245	22286	36894;36895	36894					0.06825127989009161
KLDPLLKKY	9	Unmodified	_KLDPLLKKY_					0	0	0		ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.311279296875	2	559.352617	1116.69068	0.60006	0.00033565	3.8727	0.0021662	4.4728	0.0025019	559.3556319916695	51.712	0.26126	51.528	51.337	51.598	-0.18404					15	6	4	0	0	0	0.024418	1	5331	5331		37.812	4.9991	1	179080			32200	13367	22246	22287	36896	36896					0.13700338959301916
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.8030700683594	2	508.802957	1015.59136	0.98188	0.00049958	-1.5275	-0.00077721	-0.54566	-0.00027763	508.8021256754561	37.025	0.83752	37.025	36.613	37.45	0					59	21	5	0	0	0	0.056725	4	3008	2973;2981;2993;3008		126.24	30.052	1	5539000			32201	2570	22247	22288	36897;36898;36899;36900	36900					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.8028259277344	2	508.802957	1015.59136	0.010802	5.496E-06	-0.59545	-0.00030297	-0.58465	-0.00029747	508.8026379305707	36.906	0.90939	36.843	36.47	37.379	-0.063389					61	23	4	0	0	0	0.086035	2	2937	2937;2961		115.49	37.577	1	5448500			32202	2570	22247	22288	36901;36902	36901					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.802978515625	2	508.802957	1015.59136	-0.25862	-0.00013159	-0.34375	-0.0001749	-0.60237	-0.00030649	508.802747093483	37.02	1.0373	37.052	36.678	37.715	0.032269					68	26	4	0	0	0	0.034407	3	2934	2911;2923;2934		138.06	44.867	1	4894200			32203	2570	22247	22288	36903;36904;36905	36905					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8019714355469	2	508.802957	1015.59136	0.2989	0.00015208	-0.75901	-0.00038619	-0.46012	-0.00023411	508.8025369565805	37.061	1.1961	36.868	36.455	37.651	-0.193					98	30	6	0	0	0	0.034407	3	2929	2929;2950;2963		138.06	44.919	1	9275900			32204	2570	22247	22288	36906;36907;36908	36906					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.80133056640625	2	508.802957	1015.59136	-0.84376	-0.00042931	0.27988	0.00014241	-0.56388	-0.0002869	508.80307253940055	37.096	1.3575	36.876	36.405	37.763	-0.2195					101	34	6	0	0	0	0.01896	5	2929	2929;2937;2949;2961;2976		150.36	27.613	1	9175300			32205	2570	22247	22288	36909;36910;36911;36912;36913	36909					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.8028564453125	2	508.802957	1015.59136	0.38894	0.0001979	-0.89059	-0.00045314	-0.50165	-0.00025524	508.80248416070725	37.068	1.3961	36.859	36.405	37.801	-0.2092					100	35	5	0	0	0	0.03201	5	2944	2911;2919;2931;2944;2958		139.97	32.144	1	8901700			32206	2570	22247	22288	36914;36915;36916;36917;36918	36917					0.08418896274520193
KLDQCFQL	8	Carbamidomethyl (C)	_KLDQC(Carbamidomethyl (C))FQL_	KLDQC(1)FQL		KLDQC(66)FQL		0	1	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000504606.1_1_5:14291106-14297405:+|nuORF;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.263427734375	2	526.265684	1050.51682	-0.68013	-0.00035793	-3.3893	-0.0017837	-4.0694	-0.0021416	526.2637528929458	21.077	0.63372	20.987	20.72	21.354	-0.090092					33	12	4	0	0	0	0.71833	2	609	597;609		65.803	7.9919	1	504560			32207	1053;6785	22248	22289	36919;36920	36920	16				-0.00642189808513649
KLDQDLNEV	9	Unmodified	_KLDQDLNEV_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2759399414062	2	537.277303	1072.54005	-1.5118	-0.00081227	0.70459	0.00037856	-0.80724	-0.00043371	537.2775749646619	44.101	1.5095	44.101	43.8	45.31	0					103	43	5	0	0	0	0.013337	4	4167	4167;4179;4192;4204		209.19	48.983	1	16230000			32208	2876	22249	22290	36921;36922;36923;36924	36921					0.006685275098107013
KLDQDLNEV	9	Unmodified	_KLDQDLNEV_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.2775268554688	2	537.277303	1072.54005	-1.6132	-0.00086673	1.2048	0.0006473	-0.40842	-0.00021943	537.2777359578847	44.282	1.1613	44.137	43.781	44.942	-0.14471					103	33	5	0	0	0	0.013719	4	4178	4178;4190;4203;4216		195.05	33.493	1	14764000			32209	2876	22249	22290	36925;36926;36927;36928	36925					0.006685275098107013
KLDQDLNEV	9	Unmodified	_KLDQDLNEV_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2772216796875	2	537.277303	1072.54005	-1.0088	-0.00054199	0.10603	5.6966E-05	-0.90275	-0.00048502	537.2773743143371	44.155	1.319	44.192	43.888	45.207	0.0369					69	37	2	0	0	0	0.013946	4	4132	4120;4132;4145;4158		195.05	33.73	1	15505000			32210	2876	22249	22290	36929;36930;36931;36932	36930					0.006685275098107013
KLDQTRHF	8	Unmodified	_KLDQTRHF_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.7791137695312	2	522.78289	1043.55123	-0.48696	-0.00025457	-0.85672	-0.00044788	-1.3437	-0.00070245	522.782385034215	78.104	0.57574	78.12	77.863	78.438	0.015907					15	13	2	0	0	0	0.027866	1	9583	9583		27.882	8.5223	1	112750	+		32211	25924	22250	22291	36933	36933					0.031193943946163927
KLDQVEVTLG	10	Unmodified	_KLDQVEVTLG_					0	0	0			REV__nc|ENSG00000120539|Q96GX5-2|MASTL	REV__nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.741455078125	2	551.311146	1100.60774	-0.41862	-0.00023079	3.4406	0.0018968	3.022	0.001666	551.3112215338765	65.929	0.15408	65.959	65.852	66.006	0.030106					5	3	2	0	0	0	0.03519	1	7737	7737		35.152	6.0025	1	50299	+		32212	22539	22251	22292	36934	36934					0.061459774406330325
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.8223266601562	2	532.826766	1063.63898	-0.69442	-0.00037001	0.27726	0.00014773	-0.41716	-0.00022228	532.8267754691212	52.255	0.92274	52.255	51.942	52.864	0					66	23	5	0	0	0	0.043667	3	5583	5583;5594;5609		131.03	49.843	1	3477300			32213	4941	22252	22293	36935;36936;36937	36935					0.1097059526537123
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8229370117188	2	532.826766	1063.63898	-0.26258	-0.00013991	-0.041335	-2.2024E-05	-0.30391	-0.00016193	532.826590350083	52.339	0.92002	52.191	51.915	52.835	-0.14735					56	23	4	0	0	0	0.03201	2	5583	5583;5596		139.97	55.055	1	3260000			32214	4941	22252	22293	36938;36939	36938					0.1097059526537123
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.822998046875	2	532.826766	1063.63898	-0.79041	-0.00042115	0.48235	0.00025701	-0.30806	-0.00016414	532.826833082368	52.083	0.89547	52.175	51.93	52.826	0.091938					56	22	4	0	0	0	0.053401	2	5497	5497;5510		127.46	65.354	1	1683600			32215	4941	22252	22293	36940;36941	36940					0.1097059526537123
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.826766	1063.63898	-0.83911	-0.0004471	0.73457	0.0003914	-0.10454	-5.5703E-05	532.8270559404154	52.173	0.68417	52.055	51.796	52.48	-0.11875	-0.11352	0.00037652	NaN	139.97	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1073400			32216	4941	22252	22293							0.1097059526537123
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.826766	1063.63898	-1.4834	-0.0007904	1.0703	0.00057028	-0.41312	-0.00022012	532.8273102625383	52.463	0.64676	52.194	51.907	52.553	-0.26903	0.025495	0.00073427	NaN	139.97	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022200			32217	4941	22252	22293							0.1097059526537123
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.826766	1063.63898	-0.41957	-0.00022356	-0.12254	-6.5293E-05	-0.54211	-0.00028885	532.8266790426986	52.323	0.58303	52.139	51.852	52.435	-0.18405	-0.028907	-0.00053687	NaN	139.97	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100500			32218	4941	22252	22293							0.1097059526537123
KLDQYFRGLY	10	Unmodified	_KLDQYFRGLY_					0	0	0			REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	3	434.89955	1301.67682	0.057083	2.4825E-05	-2.9662	-0.00129	-2.9092	-0.0012652	435.232698821586	42.558	0.30353	42.329	42.14	42.444	-0.22857					12	7	2	0	0	0	0.03519	1	3821	3821		11.097	0	1	128370	+		32219	24381	22253	22294	36942	36942					0.03805061460207071
KLDRANAEI	9	Unmodified	_KLDRANAEI_					0	0	0		nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-2|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;ENST00000465600.1_1_10:124008150-124013568:+|nuORF	nc|ENSG00000138162|O95359-3|TACC2	nc|ENSG00000138162|O95359-3|TACC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2880859375	2	515.288005	1028.56146	-0.85235	-0.00043921	0.39852	0.00020535	-0.45383	-0.00023385	515.288242289824	40.259	1.496	40.029	39.623	41.119	-0.23021					72	39	2	0	0	0	0.45795	1	3453	3453		62.107	0	1	18571000			32220	5215	22254	22295	36943	36943					0.04831957329179204
KLDSKVNII	9	Unmodified	_KLDSKVNII_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6	nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.293701171875	2	515.318774	1028.623	-0.55233	-0.00028463	0.21863	0.00011266	-0.3337	-0.00017196	515.3186520847526	40.076	0.56956	39.963	39.603	40.172	-0.11222					29	14	3	0	0	0	0.023454	1	3491	3491		82.241	0	1	527660			32221	18243;7274	22255	22296	36944	36944					0.1098288902846889
KLDSTPLKA	9	Unmodified	_KLDSTPLKA_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7905578613281	2	486.78985	971.565146	-0.45596	-0.00022196	-0.20802	-0.00010126	-0.66398	-0.00032322	486.7895384013792	31.926	0.62965	31.926	31.71	32.34	0					34	15	3	0	0	0	0.077175	1	2181	2181		118.74	20.114	1	1480500			32222	9565	22256	22297	36945	36945					0.07822627103041668
KLDSTPLKA	9	Unmodified	_KLDSTPLKA_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7903747558594	2	486.78985	971.565146	-0.41966	-0.00020428	-0.26245	-0.00012776	-0.68211	-0.00033204	486.7895650146574	31.871	0.7524	31.883	31.624	32.376	0.011797					31	18	2	0	0	0	0.030064	1	2152	2152		141.52	42.891	1	1546800			32223	9565	22256	22297	36946	36946					0.07822627103041668
KLDSTPLKA	9	Unmodified	_KLDSTPLKA_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.79150390625	2	486.78985	971.565146	-0.77697	-0.00037822	0.22933	0.00011164	-0.54764	-0.00026659	486.7897736504228	31.678	0.64221	31.746	31.527	32.169	0.068962					37	15	4	0	0	0	0.094442	2	2078	2078;2088		112.41	24.714	1	1659800			32224	9565	22256	22297	36947;36948	36947					0.07822627103041668
KLDVEVLR	8	Unmodified	_KLDVEVLR_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|101|2|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|101|2|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|101|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2548522949219	2	486.297842	970.581131	0.19905	9.68E-05	-0.19938	-9.696E-05	-0.00032921	-1.6009E-07	486.29763574403944	64.329	0.77596	64.329	64.133	64.909	0					33	20	2	0	0	0	0.027866	1	7622	7622		27.882	0	1	1202600			32225	17724	22257	22298	36949	36949					0.09466333339946686
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7557373046875	2	472.756007	943.497461	0.62469	0.00029532	-0.70598	-0.00033376	-0.081294	-3.8432E-05	472.75569445559984	42.73	2.1159	42.73	41.615	43.731	0					119	59	5	0	0	0	0.012922	3	3967	3943;3955;3967		172.25	62.77	1	9887000			32226	9479	22258	22299	36950;36951;36952	36952					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7561950683594	2	472.756007	943.497461	0.44422	0.00021001	-0.6329	-0.00029921	-0.18867	-8.9196E-05	472.7556908442252	42.904	1.5014	42.765	42.108	43.609	-0.13929					103	41	4	0	0	0	0.030064	2	3968	3956;3968		141.52	28.109	1	10041000			32227	9479	22258	22299	36953;36954	36954					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7559509277344	2	472.756007	943.497461	0.63719	0.00030124	-0.87712	-0.00041466	-0.23993	-0.00011343	472.75558091197695	42.836	1.2514	42.862	42.12	43.371	0.026012					91	34	4	0	0	0	0.048057	3	3917	3905;3917;3929		129.42	32.431	1	9379300			32228	9479	22258	22299	36955;36956;36957	36956					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.75579833984375	2	472.756007	943.497461	0.13682	6.4682E-05	-0.19864	-9.3908E-05	-0.06182	-2.9226E-05	472.7558120655285	42.908	0.85719	42.796	42.464	43.322	-0.11253					52	22	3	0	0	0	0.094442	2	3888	3888;3912		112.41	13.793	1	5269100			32229	9479	22258	22299	36958;36959	36958					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.7560119628906	2	472.756007	943.497461	-0.18132	-8.5722E-05	0.2161	0.00010216	0.034774	1.644E-05	472.75598598879327	43.097	0.82419	42.859	42.561	43.385	-0.23736					67	21	5	0	0	0	0.023452	2	3905	3905;3915		146.79	44.012	1	5012200			32230	9479	22258	22299	36960;36961	36960					0.023451771722420744
KLDVGNAEV	9	Unmodified	_KLDVGNAEV_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.7557373046875	2	472.756007	943.497461	-0.82362	-0.00038937	0.78684	0.00037198	-0.036778	-1.7387E-05	472.75629038685236	43.119	0.96476	42.893	42.484	43.449	-0.22597					72	25	5	0	0	0	0.038547	2	3905	3905;3916		134.77	37.293	1	5103700			32231	9479	22258	22299	36962;36963	36962					0.023451771722420744
KLDVVHVKVMV	11	Oxidation (M)	_KLDVVHVKVM(Oxidation (M))V_		KLDVVHVKVM(1)V		KLDVVHVKVM(44)V	0	0	1			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8825073242188	2	641.881216	1281.74788	1.496	0.00096027	0.3574	0.00022941	1.8534	0.0011897	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	0.96599	1	12103	12103		44.377	11.565	1	2979200	+		32232	26447	22259	22300	36964	36964		782			0.1182743817332721
KLDYKIIL	8	Unmodified	_KLDYKIIL_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7557678222656	2	503.320786	1004.62702	-0.20619	-0.00010378	0.21651	0.00010897	0.010315	5.1915E-06	503.3208373092408	47.672	0.46784	47.575	47.349	47.817	-0.097553					24	12	3	0	0	0	0.027866	1	4652	4652		38.806	0	1	347640	+		32233	27902	22260	22301	36965	36965					0.12488978522196703
KLDYKIIL	8	Unmodified	_KLDYKIIL_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7554931640625	2	503.320786	1004.62702	-0.52884	-0.00026618	0.13754	6.9228E-05	-0.3913	-0.00019695	503.3207022332026	47.974	0.54552	47.698	47.421	47.966	-0.27598					30	14	3	0	0	0	0.027866	1	4679	4679		30.504	0	1	346150	+		32234	27902	22260	22301	36966	36966					0.12488978522196703
KLEAHRKKDL	10	Unmodified	_KLEAHRKKDL_					0	0	0			REV__ENSG00000165102|ENST00000379644|HGSNAT	REV__ENSG00000165102|ENST00000379644|HGSNAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.3703002929688	2	619.372404	1236.73025	0.077472	4.7984E-05	-2.4072	-0.001491	-2.3298	-0.001443	619.3708656217665	100.27	0.64758	100.1	99.921	100.57	-0.17088					49	19	3	0	0	0	1.1088	1	12455	12455		31.53	1.2121	1	1194100	+		32235	25838	22261	22302	36967	36967					0.121358589627107
KLEAWLPDV	9	Unmodified	_KLEAWLPDV_					0	0	0		ENST00000395655.8_1_7:45148869-45151416:-|nuORF	ENST00000395655.8_1_7:45148869-45151416:-|nuORF	ENST00000395655.8_1_7:45148869-45151416:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7293090820312	2	535.797675	1069.5808	-0.18345	-9.8293E-05	1.6003	0.00085746	1.4169	0.00075917	535.7985503083299	59.95	0.10902	59.774	59.704	59.813	-0.1761					4	2	2	0	0	0	0.024405	1	6653	6653		20.947	0	1	25955			32236	13526	22262	22303	36968	36968					0.04878913620086678
KLEDFMSTMDA	11	Unmodified	_KLEDFMSTMDA_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.26422119140625	3	429.858035	1286.55227	0.29962	0.00012879	1.7654	0.00075887	2.065	0.00088766	430.1935051207132	41.891	0.35886	41.768	41.565	41.924	-0.12299					12	9	2	0	0	0	0.024789	1	3714	3714		15.921	0	1	109510			32237	8423	22263	22304	36969	36969					-0.07953940133666038
KLEDLKARL	9	Unmodified	_KLEDLKARL_					0	0	0			REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.337158203125	2	543.337498	1084.66044	-1.0451	-0.00056785	0.26609	0.00014458	-0.77902	-0.00042327	543.337595664727	48.761	1.5232	48.608	48.329	49.852	-0.15276					106	41	5	0	0	0	0.1158	1	4955	4955		107.01	8.3781	1	8387100	+		32238	20088	22264	22305	36970	36970					0.12149980294066154
KLEDLKARL	9	Unmodified	_KLEDLKARL_					0	0	0			REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3375244140625	2	543.337498	1084.66044	-1.1006	-0.00059798	0.26419	0.00014354	-0.83638	-0.00045444	543.3376411108372	48.458	1.4951	48.525	48.265	49.76	0.066795					95	40	4	0	0	0	0.077175	3	4900	4876;4900;4913		118.74	8.4255	1	8938500	+		32239	20088	22264	22305	36971;36972;36973	36972					0.12149980294066154
KLEEIRSK	8	Unmodified	_KLEEIRSK_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-4|PLCH2;ENST00000473964.5_1_1:2433496-2434522:+|nuORF;nc|ENSG00000149527|O75038-5|PLCH2;nc|ENSG00000149527|O75038-2|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7664489746094	2	501.800749	1001.58694	0.9958	0.0004997	2.582	0.0012956	3.5778	0.0017953	501.8016903556537	58.9	0.25376	58.713	58.575	58.829	-0.18705					9	6	2	0	0	0	0.027866	1	6646	6646		30.504	0	1	134610			32240	12537	22265	22306	36974	36974					0.08621431851622674
KLEEPDVFV	9	Unmodified	_KLEEPDVFV_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.327392578125	2	538.28714	1074.55973	-0.45888	-0.00024701	0.37898	0.000204	-0.079902	-4.301E-05	538.2874480833104	99.669	0.29496	99.68	99.49	99.785	0.010231					9	6	2	0	0	0	0.024427	1	12717	12717		51.335	0	1	90162	+		32241	22204	22266	22307	36975	36975					0.02542903520566142
KLEETKSFF	9	Unmodified	_KLEETKSFF_					0	0	0			REV__chr17:30568318-30568815|494|17.3|0.18|6.58|-|0|KRT17P3,KRT17P3|1	REV__chr17:30568318-30568815|494|17.3|0.18|6.58|-|0|KRT17P3,KRT17P3|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2405395507812	2	564.800414	1127.58628	-0.0039937	-2.2557E-06	-0.55955	-0.00031603	-0.56354	-0.00031829	564.8001084784736	68.83	0.77944	68.6	68.357	69.137	-0.23048					36	18	4	0	0	0	0.024292	1	8029	8029		32.812	0	1	578520	+		32242	19386	22267	22308	36976	36976					0.02758592411896643
KLEETTKLT	9	Unmodified	_KLEETTKLT_					0	0	0		nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8062744140625	2	531.805697	1061.59684	-1.5902	-0.00084567	2.0732	0.0011026	0.48304	0.00025688	531.8067658237762	20.397	0.82154	20.397	20.127	20.949	0					54	16	4	0	0	0	0.35646	1	552	552		68.787	7.8149	1	929490			32243	6225	22268	22309	36977	36977					0.06850575066323472
KLEFNENLSL	10	Unmodified	_KLEFNENLSL_					0	0	0			REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	604.7872314453125	2	603.821878	1205.6292	-1.8335	-0.0011071	1.7529	0.0010585	-0.080589	-4.8661E-05	603.8227146238494	74.462	0.42625	74.472	74.18	74.607	0.0096512					18	9	3	0	0	0	0.03519	1	9033	9033		51.528	7.877	1	77418	+		32244	29034	22269	22310	36978	36978					0.03461362469329288
KLEFRSLYRGK	11	Unmodified	_KLEFRSLYRGK_					0	0	0		ENST00000489526.1_1_10:102762295-102762823:+|nuORF	ENST00000489526.1_1_10:102762295-102762823:+|nuORF	ENST00000489526.1_1_10:102762295-102762823:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.23358154296875	3	466.273499	1395.79867	0.4417	0.00020595	-0.51779	-0.00024143	-0.076093	-3.548E-05	466.27320185138944	67.213	0.91825	66.964	66.749	67.667	-0.2484					59	21	4	0	0	0	0.024834	1	7811	7811		17.833	0	1	3601200			32245	15413	22270	22311	36979	36979					0.11660103542544675
KLEKACSEI	9	Unmodified	_KLEKACSEI_					0	0	0		KIF15|p.F551C|1|0.42|ENSG00000163808|chr3:44802956-44802956|T/G|missense_variant	KIF15|p.F551C|1|0.42|ENSG00000163808|chr3:44802956-44802956|T/G|missense_variant	KIF15|p.F551C|1|0.42|ENSG00000163808|chr3:44802956-44802956|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7279968261719	2	510.773342	1019.53213	-0.036721	-1.8756E-05	-2.4469	-0.0012498	-2.4836	-0.0012686	510.77283259924207	54.472	0.52258	54.57	54.393	54.916	0.098011					18	14	2	0	0	0	0.01791	1	5938	5938		127.46	10.558	1	213160			32246	17796	22271	22312	36980	36980					0.023146769886807306
KLEKACSEI	9	Unmodified	_KLEKACSEI_					0	0	0		KIF15|p.F551C|1|0.42|ENSG00000163808|chr3:44802956-44802956|T/G|missense_variant	KIF15|p.F551C|1|0.42|ENSG00000163808|chr3:44802956-44802956|T/G|missense_variant	KIF15|p.F551C|1|0.42|ENSG00000163808|chr3:44802956-44802956|T/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.773342	1019.53213	-0.56651	-0.00028936	-7.0567	-0.0036043	-7.6232	-0.0038937	510.7683402208575	54.232	0.31843	54.232	54.109	54.428	0	-0.16922	-0.0019244	NaN	127.46	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185310			32247	17796	22271	22312							0.023146769886807306
KLEKIKANPL	10	Unmodified	_KLEKIKANPL_					0	0	0			REV__nc|ENSG00000135945|Q9UBZ9-3|REV1	REV__nc|ENSG00000135945|Q9UBZ9-3|REV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.365966796875	2	577.368798	1152.72304	-0.32694	-0.00018876	-3.4688	-0.0020028	-3.7958	-0.0021916	577.3666744516432	101.1	0.73207	101.11	100.83	101.56	0.0090332					51	16	4	0	0	0	1.118	1	12928	12928		30.318	2.2362	1	1370400	+		32248	23602	22272	22313	36981	36981					0.15279126362247553
KLEKIKANPL	10	Unmodified	_KLEKIKANPL_					0	0	0			REV__nc|ENSG00000135945|Q9UBZ9-3|REV1	REV__nc|ENSG00000135945|Q9UBZ9-3|REV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3665161132812	2	577.368798	1152.72304	0.46361	0.00026767	-4.3189	-0.0024936	-3.8553	-0.0022259	577.3661806344381	101.22	0.81992	101.09	100.81	101.63	-0.13156					47	17	5	0	0	0	1.0002	1	12558	12558		45.972	6.7194	1	985230	+		32249	23602	22272	22313	36982	36982					0.15279126362247553
KLEKIKANPL	10	Unmodified	_KLEKIKANPL_					0	0	0			REV__nc|ENSG00000135945|Q9UBZ9-3|REV1	REV__nc|ENSG00000135945|Q9UBZ9-3|REV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3662719726562	2	577.368798	1152.72304	-0.040808	-2.3561E-05	-3.8221	-0.0022067	-3.8629	-0.0022303	577.3664534876788	101.22	0.73849	101.09	100.81	101.55	-0.12576					52	16	4	0	0	0	1.0002	1	12558	12558		45.972	1.5951	1	981470	+		32250	23602	22272	22313	36983	36983					0.15279126362247553
KLEKIKYDL	9	Unmodified	_KLEKIKYDL_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.345458984375	2	575.347532	1148.68051	-1.1631	-0.00066918	-2.3888	-0.0013744	-3.5519	-0.0020436	575.3460130844637	97.061	1.8236	97.061	96.615	98.439	0					112	41	5	0	0	0	0.94809	1	12404	12404		29.15	1.2673	1	3789000	+		32251	28991	22273	22314	36984	36984					0.1121173123403878
KLEKLDSP	8	Unmodified	_KLEKLDSP_					0	0	0			REV__ENST00000525765.5_1_11:65652547-65653012:-|nuORF	REV__ENST00000525765.5_1_11:65652547-65653012:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7844543457031	2	465.26875	928.522947	-1.1792	-0.00054863	1.7972	0.00083618	0.61804	0.00028755	465.26914125472916	44.364	0.71535	44.364	43.872	44.587	0					33	20	2	0	0	0	0.027866	1	4263	4263		37.159	18.835	1	564730	+		32252	34421	22274	22315	36985	36985					0.055826516946467564
KLEKLDSP	8	Unmodified	_KLEKLDSP_					0	0	0			REV__ENST00000525765.5_1_11:65652547-65653012:-|nuORF	REV__ENST00000525765.5_1_11:65652547-65653012:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7845153808594	2	465.26875	928.522947	0.35633	0.00016579	0.60203	0.00028011	0.95836	0.00044589	465.26865066881663	44.379	0.78535	44.416	43.998	44.783	0.0369					35	22	2	0	0	0	0.027866	1	4182	4182		37.159	24.952	1	368620	+		32253	34421	22274	22315	36986	36986					0.055826516946467564
KLEKLMVK	8	Oxidation (M)	_KLEKLM(Oxidation (M))VK_		KLEKLM(1)VK		KLEKLM(120)VK	0	0	1		ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.810546875	2	502.81227	1003.60999	-0.18152	-9.1272E-05	-3.776	-0.0018986	-3.9575	-0.0019899	502.810285499946	69.255	1.0946	69.255	68.898	69.993	0					80	26	5	0	0	0	0.28835	3	8332	8332;8344;8368		116.9	23.76	1	16132000			32254	9747	22275	22316	36987;36988;36989	36987		402			0.10832734644725406
KLEKLMVK	8	Oxidation (M)	_KLEKLM(Oxidation (M))VK_		KLEKLM(1)VK		KLEKLM(100)VK	0	0	1		ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.81085205078125	2	502.81227	1003.60999	0.42488	0.00021363	-4.3559	-0.0021902	-3.9311	-0.0019766	502.80998032632203	69.55	1.0676	69.257	68.97	70.038	-0.29291					73	26	4	0	0	0	0.36844	1	8370	8370		101.6	16.685	1	13895000			32255	9747	22275	22316	36990	36990		402			0.10832734644725406
KLEKLMVK	8	Oxidation (M)	_KLEKLM(Oxidation (M))VK_		KLEKLM(1)VK		KLEKLM(120)VK	0	0	1		ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	ENSG00000188763|ENST00000344575|FZD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.8100280761719	2	502.81227	1003.60999	-0.37464	-0.00018837	-3.6598	-0.0018402	-4.0345	-0.0020286	502.8103406634774	69.304	1.0992	69.319	68.974	70.073	0.015129					83	26	5	0	0	0	0.28835	2	8261	8261;8299		116.9	23.76	1	13256000			32256	9747	22275	22316	36991;36992	36991		402			0.10832734644725406
KLEKQLESEAV	11	Unmodified	_KLEKQLESEAV_					0	0	0			REV__ENSG00000166171|ENST00000370151|DPCD	REV__ENSG00000166171|ENST00000370151|DPCD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.1817932128906	3	425.23812	1272.69253	-0.12292	-5.227E-05	0.23597	0.00010034	0.11305	4.8072E-05	425.23823646959255	34.903	1.5859	34.692	33.928	35.513	-0.21044					61	39	2	0	0	0	0.024747	1	2589	2589		39.873	3.5555	1	2850000	+		32257	25986	22276	22317	36993	36993					0.06709303186562465
KLELEKQVF	9	Unmodified	_KLELEKQVF_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.33056640625	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.93097	1	11784	11784		30.318	2.4355	1	14057000			32258	2351	22277	22318	36994	36994					0.0881915819995811
KLELEKQVF	9	Unmodified	_KLELEKQVF_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297729492188	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	0.70156	1	11187	11187		45.972	8.1607	1	4116000			32259	2351	22277	22318	36995	36995					0.0881915819995811
KLELIFDD	8	Unmodified	_KLELIFDD_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.28375244140625	2	496.768583	991.522613	-0.49118	-0.000244	2.0841	0.0010353	1.593	0.00079134	496.7692029944968	20.646	0.39685	20.423	20.216	20.613	-0.22344					11	7	3	0	0	0	0.027866	1	534	534		25.45	0	1	11606	+		32260	20911	22278	22319	36996	36996					0.026512319748121627
KLELKPPDIP	10	Unmodified	_KLELKPPDIP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.3455200195312	2	575.347532	1148.68051	0.72586	0.00041762	-4.1243	-0.0023729	-3.3984	-0.0019553	575.345019698839	97.117	1.277	96.993	96.572	97.849	-0.12368					101	28	5	0	0	0	1.1307	1	12063	12063		26.693	1.1189	1	3498400			32261	6479	22279	22320	36997	36997					0.1121173123403878
KLELLRDS	8	Unmodified	_KLELLRDS_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.307373046875	2	487.287474	972.560395	0.88198	0.00042978	-2.6962	-0.0013138	-1.8142	-0.00088404	487.28599816501315	20.486	0.49123	20.29	19.993	20.484	-0.19577					14	9	2	0	0	0	0.027866	1	562	562		35.618	11.416	1	23984	+		32262	23585	22280	22321	36998	36998					0.07301742960282809
KLELQGVK	8	Unmodified	_KLELQGVK_					0	0	0		ENST00000575528.5_2_17:673461-674588:-|nuORF;ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4	ENST00000575528.5_2_17:673461-674588:-|nuORF	ENST00000575528.5_2_17:673461-674588:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.78717041015625	2	457.78711	913.559667	-0.23924	-0.00010952	0.29551	0.00013528	0.056274	2.5761E-05	457.7871400860951	27.267	0.84694	27.11	26.758	27.605	-0.15664					44	19	4	0	0	0	0.71063	1	1464	1464		66.429	11.653	1	834260			32263	7725	22281	22322	36999	36999					0.09942948311243072
KLEMLKVTT	9	Unmodified	_KLEMLKVTT_					0	0	0			REV__ENSG00000073598|ENST00000158009|FNDC8	REV__ENSG00000073598|ENST00000158009|FNDC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.81640625	2	531.81501	1061.61547	-0.094811	-5.0422E-05	3.426	0.001822	3.3312	0.0017716	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.5973	1	10836	10836		52.937	10.541	1	4853400	+		32264	20502	22282	22323	37000	37000					0.08712413436524002
KLENETPTSRI	11	Unmodified	_KLENETPTSRI_					0	0	0			REV__ENST00000564547.1_1_16:88923507-88925305:+|nuORF	REV__ENST00000564547.1_1_16:88923507-88925305:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	644.3497314453125	2	644.348791	1286.68303	0.27072	0.00017444	1.1574	0.00074577	1.4281	0.00092021	644.3494009474977	110.4	0.73016	110.41	110.11	110.84	0.0062943					57	20	4	0	0	0	1.0344	1	13929	13929		29.17	2.4771	1	415830	+		32265	26148	22283	22324	37001	37001					0.051155349010286955
KLENVIASA	9	Unmodified	_KLENVIASA_					0	0	0			REV__BIRC6-SPAST|1|fusion;REV__BIRC6-SPAST|3|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8092041015625	2	472.7742	943.533846	0.21057	9.9551E-05	0.56216	0.00026577	0.77272	0.00036532	472.77446866038713	40.917	0.76661	40.94	40.764	41.53	0.023006					33	21	3	0	0	0	0.023837	1	3577	3577		45.972	0	1	413670	+		32266	19208;19209	22284	22325	37002	37002					0.059820540689429436
KLEPHTVSVS	10	Unmodified	_KLEPHTVSVS_					0	0	0			REV__ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	REV__ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2904052734375	2	548.803488	1095.59242	-0.31556	-0.00017318	0.26389	0.00014483	-0.051671	-2.8357E-05	548.8033869283448	45.998	0.48536	45.737	45.521	46.006	-0.26118					22	12	3	0	0	0	0.03519	1	4369	4369		35.152	0	1	293660	+		32267	25734	22285	22326	37003	37003					0.04845110643418593
KLEPKRTGT	9	Unmodified	_KLEPKRTGT_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3071899414062	2	515.306198	1028.59784	-0.086728	-4.4692E-05	-1.7121	-0.00088227	-1.7988	-0.00092696	515.3052739178606	20.387	0.39297	20.22	20.002	20.395	-0.16774					22	7	4	0	0	0	0.45795	1	552	552		62.107	10.772	1	293930			32268	8797	22286	22327	37004	37004					0.08468834225891442
KLERAEQLI	9	Unmodified	_KLERAEQLI_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2891845703125	2	550.327131	1098.63971	-0.77507	-0.00042654	0.25807	0.00014203	-0.51699	-0.00028451	550.3271269646326	48.338	0.47868	48.338	48.037	48.516	0					36	13	3	0	0	0	0.024025	1	4889	4889		62.107	17.73	1	1347100			32269	3717	22287	22328	37005	37005					0.09433389914420331
KLERCSKV	8	Unmodified	_KLERCSKV_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.230224609375	2	481.776219	961.537886	-0.59205	-0.00028524	-0.12974	-6.2507E-05	-0.7218	-0.00034774	481.77612498958007	28.773	0.63873	28.604	28.131	28.769	-0.16897					20	14	2	0	0	0	0.027866	1	1680	1680		24.203	6.8378	1	69342	+		32270	23777	22288	22329	37006	37006					0.05557820291005555
KLERPFAR	8	Unmodified	_KLERPFAR_					0	0	0			REV__nc|ENSG00000137868|Q9BX79-4|STRA6	REV__nc|ENSG00000137868|Q9BX79-4|STRA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.26904296875	2	508.803626	1015.5927	-0.49814	-0.00025345	-1.1992	-0.00061018	-1.6974	-0.00086363	508.8029264696036	45.25	0.55602	45.039	44.793	45.349	-0.21109					39	15	4	0	0	0	0.027866	1	4224	4224		23.042	0	1	1356400	+		32271	36704	22289	22330	37007	37007					0.08552575153930775
KLESLLYN	8	Unmodified	_KLESLLYN_					0	0	0			REV__nc|ENSG00000139324|Q6ZXV5|TMTC3	REV__nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.579345703125	2	490.276575	978.538597	-0.13515	-6.6261E-05	-2.571	-0.0012605	-2.7062	-0.0013268	490.27519424121476	19.453	0.54307	19.292	19.084	19.627	-0.16079					15	10	2	0	0	0	0.027866	1	407	407		26.693	1.2427	1	43854	+		32272	23934	22290	22331	37008	37008					0.04846938211710494
KLESLNTDN	9	Unmodified	_KLESLNTDN_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7625122070312	2	517.261653	1032.50875	-0.31038	-0.00016055	-2.6113	-0.0013507	-2.9217	-0.0015113	517.2596036008363	67.425	0.55869	67.137	66.911	67.47	-0.28834					25	13	3	0	0	0	0.024021	1	8049	8049		68.787	5.253	1	208920			32273	9658	22291	22332	37009	37009					-0.00620045524260604
KLESLNTDN	9	Unmodified	_KLESLNTDN_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.261653	1032.50875	-0.67178	-0.00034749	-2.6457	-0.0013685	-3.3175	-0.001716	517.2602811894562	67.071	0.4492	67.071	66.755	67.205	0	-0.083665	-0.00039095	NaN	68.787	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175830			32274	9658	22291	22332							-0.00620045524260604
KLESLNTDN	9	Unmodified	_KLESLNTDN_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.261653	1032.50875	-0.51777	-0.00026782	-2.977	-0.0015399	-3.4948	-0.0018077	517.2596213122101	67.223	0.44503	67.247	66.985	67.43	0.023903	0.092179	-0.00073368	NaN	68.787	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171320			32275	9658	22291	22332							-0.00620045524260604
KLESLNTDN	9	Unmodified	_KLESLNTDN_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.261653	1032.50875	0.3127	0.00016175	-2.744	-0.0014194	-2.4313	-0.0012576	517.2602136987566	67.397	0.66822	67.142	66.87	67.538	-0.25516	-0.012316	-0.00049263	NaN	68.787	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	803870			32276	9658	22291	22332							-0.00620045524260604
KLESLNTDN	9	Unmodified	_KLESLNTDN_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	517.261653	1032.50875	-0.14151	-7.3198E-05	-2.1773	-0.0011262	-2.3188	-0.0011994	517.2604361834135	67.388	0.58201	67.154	66.889	67.471	-0.23376	-0.00061001	9.3688E-05	NaN	68.787	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733180			32277	9658	22291	22332							-0.00620045524260604
KLESLNTDN	9	Unmodified	_KLESLNTDN_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.261653	1032.50875	-0.35083	-0.00018147	-1.759	-0.00090989	-2.1099	-0.0010914	517.2605743392403	67.415	0.5037	67.177	66.919	67.422	-0.23814	0.022258	0.00052636	NaN	68.787	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	744400			32278	9658	22291	22332							-0.00620045524260604
KLESSAAAF	9	Unmodified	_KLESSAAAF_					0	0	0		ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant;ZNF804A|p.R599Efs*46|1|0.15|ENSG00000170396|chr2:184937185-184937185|A/-|frameshift_variant;ENSG00000170396|ENST00000302277|ZNF804A	ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant	ZNF804A|p.N541Kfs*2|1|0.44|ENSG00000170396|chr2:184937012-184937013|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2311096191406	2	462.245275	922.475997	-0.71666	-0.00033127	1.9165	0.00088589	1.1998	0.00055462	462.24575978438315	35.465	0.33709	35.465	35.27	35.608	0					12	8	2	0	0	0	0.024487	1	2745	2745		40.573	7.057	1	227830			32279	8035	22292	22333	37010	37010					0.011657921435130447
KLETGAPR	8	Unmodified	_KLETGAPR_					0	0	0		nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000072958|ENST00000291439|AP1M1;ENST00000586461.1_1_19:16319820-16337387:+|nuORF	nc|ENSG00000072958|Q9BXS5-2|AP1M1	nc|ENSG00000072958|Q9BXS5-2|AP1M1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2430419921875	2	436.253434	870.492316	-0.027324	-1.192E-05	0.21453	9.3589E-05	0.1872	8.1669E-05	436.25340607287933	34.067	1.2361	34.067	33.59	34.826	0					66	31	3	0	0	0	0.027866	1	2533	2533		44.117	19.914	1	1166700			32280	1497	22293	22334	37011	37011					0.051889181002820806
KLETVVQMQ	9	Unmodified	_KLETVVQMQ_					0	0	0			REV__ENST00000418336.6_1_21:44424491-44427729:+|nuORF	REV__ENST00000418336.6_1_21:44424491-44427729:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7933349609375	2	538.294442	1074.57433	-1.0755	-0.00057894	-1.2367	-0.00066571	-2.3122	-0.0012447	538.29337189326	24.948	0.84262	24.948	24.209	25.052	0					29	18	3	0	0	0	0.024541	1	1137	1137		26.693	0	1	296790	+		32281	25294	22294	22335	37012	37012					0.040026523970709604
KLEVQRQL	8	Unmodified	_KLEVQRQL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	507.308741	1012.60293	0.0052672	2.6721E-06	-0.23408	-0.00011875	-0.22881	-0.00011608	507.30861996174235	41.458	0.9344	41.481	41.182	42.117	0.023006					62	26	4	0	0	0	0.68164	1	3691	3691		68.787	5.4806	1	6643100			32282	4256;18250	22295	22336	37013	37013					0.0971313808852301
KLFASSRIK	9	Unmodified	_KLFASSRIK_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2964477539062	2	525.326934	1048.63931	0.086975	4.569E-05	-1.3293	-0.00069832	-1.2423	-0.00065263	525.326231333336	28.555	0.41519	28.636	28.452	28.867	0.080811					15	9	2	0	0	0	0.024495	1	1640	1640		34.173	3.6689	1	69380	+		32283	37004	22296	22337	37014	37014					0.11694014985209833
KLFASSRIK	9	Unmodified	_KLFASSRIK_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.326934	1048.63931	-1.6372	-0.00086006	1.7162	0.00090158	0.079032	4.1518E-05	525.3275868611051	28.888	0.34669	28.643	28.491	28.838	-0.24524	-0.10515	0.0012084	NaN	26.693	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41048	+		32284	37004	22296	22337							0.11694014985209833
KLFASSRIK	9	Unmodified	_KLFASSRIK_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.326934	1048.63931	-0.40556	-0.00021305	0.23124	0.00012148	-0.17432	-9.1575E-05	525.3267393272279	28.743	0.42302	28.592	28.401	28.824	-0.15195	-0.15635	-0.00035182	NaN	26.693	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70117	+		32285	37004	22296	22337							0.11694014985209833
KLFCITLTL	9	Unmodified	_KLFCITLTL_					0	0	0			REV__ENST00000520356.5_2_8:135490348-135490501:-|nuORF	REV__ENST00000520356.5_2_8:135490348-135490501:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.3146362304688	2	526.314646	1050.61474	-0.48826	-0.00025698	0.19756	0.00010398	-0.29069	-0.000153	526.3146636815833	74.805	2.303	74.805	74.128	76.431	0					194	58	5	0	0	0	0.091713	1	9136	9136		113.41	5.3241	1	16285000	+		32286	34291	22297	22338	37015	37015					0.09145618787465537
KLFDAPLSI	9	Unmodified	_KLFDAPLSI_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2942199707031	2	502.294768	1002.57498	0.89761	0.00045087	-0.94381	-0.00047407	-0.046196	-2.3204E-05	502.29415199641414	73.82	1.2431	73.82	73.553	74.796	0					51	29	2	0	0	0	0.03201	2	9030	9030;9043		139.97	52.216	1	4066100			32287	9040	22298	22339	37016;37017	37016					0.07379815108413368
KLFDAPLSI	9	Unmodified	_KLFDAPLSI_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2948913574219	2	502.294768	1002.57498	0.024177	1.2144E-05	-0.10215	-5.1312E-05	-0.077977	-3.9167E-05	502.2945674224268	74.141	1.2408	73.882	73.623	74.864	-0.25887					51	29	2	0	0	0	0.03666	2	9035	9035;9048		136.27	40.804	1	3792000			32288	9040	22298	22339	37018;37019	37018					0.07379815108413368
KLFDAPLSI	9	Unmodified	_KLFDAPLSI_					0	0	0		nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF	nc|ENSG00000292372|Q9NQA3|WASH6P	nc|ENSG00000292372|Q9NQA3|WASH6P	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2945861816406	2	502.294768	1002.57498	-0.38335	-0.00019255	0.22227	0.00011164	-0.16108	-8.0909E-05	502.29473579510386	73.877	1.6121	73.887	73.598	75.21	0.0096588					61	38	2	0	0	0	0.062622	2	8959	8959;8972		124.08	24.705	1	3260700			32289	9040	22298	22339	37020;37021	37020					0.07379815108413368
KLFGETTLV	9	Unmodified	_KLFGETTLV_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2919006347656	2	504.292225	1006.5699	0.2641	0.00013318	-1.416	-0.00071406	-1.1519	-0.00058088	504.29145552496846	61.661	0.526	61.435	61.047	61.573	-0.22663					33	13	5	0	0	0	0.19099	2	7109	7109;7122		90.37	8.0648	1	5067000			32290	9339	22299	22340	37022;37023	37022					0.0668751124579785
KLFGETTLV	9	Unmodified	_KLFGETTLV_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.2924499511719	2	504.292225	1006.5699	0.33123	0.00016703	-1.4662	-0.0007394	-1.135	-0.00057236	504.2914122316803	61.382	0.52894	61.453	61.022	61.551	0.071125					22	13	2	0	0	0	0.12914	3	7022	7010;7022;7034		104.06	26.739	1	5044700			32291	9339	22299	22340	37024;37025;37026	37025					0.0668751124579785
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(190)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.314453125	2	526.314646	1050.61474	-0.48826	-0.00025698	0.19756	0.00010398	-0.29069	-0.000153	526.3146636815833	74.805	2.303	74.805	74.128	76.431	0					194	58	5	0	0	0	0.0152	5	9160	9125;9160;9172;9211;9247		191.63	62.765	1	16285000			32292	1212;1317	22300	22341	37027;37028;37029;37030;37031	37028		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(150)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.3145751953125	2	526.314646	1050.61474	-0.29529	-0.00015542	-0.091295	-4.805E-05	-0.38659	-0.00020347	526.3144987687056	75.049	2.2124	74.79	74.201	76.413	-0.25887					165	56	4	0	0	0	0.016871	10	9159	9126;9135;9147;9159;9183;9197;9222;9233;9246;9258		152.47	42.133	1	16931000			32293	1212;1317	22300	22341	37032;37033;37034;37035;37036;37037;37038;37039;37040;37041	37035		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(140)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.3143920898438	2	526.314646	1050.61474	0.0146	7.684E-06	-0.51937	-0.00027335	-0.50477	-0.00026567	526.3142946599581	74.877	2.4188	74.888	74.355	76.774	0.010376					201	61	6	0	0	0	0.033448	11	9077	9057;9065;9077;9101;9114;9127;9139;9152;9163;9176;9189		138.83	32.41	1	16297000			32294	1212;1317	22300	22341	37042;37043;37044;37045;37046;37047;37048;37049;37050;37051;37052	37044		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(140)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.3142700195312	2	526.314646	1050.61474	-0.058575	-3.0829E-05	-0.070269	-3.6984E-05	-0.12884	-6.7812E-05	526.3144376557085	74.934	2.0354	74.658	74.045	76.08	-0.27573					126	49	4	0	0	0	0.033448	3	8828	8828;8840;8852		138.83	12.402	1	5060500			32295	1212;1317	22300	22341	37053;37054;37055	37053		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(100)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.3146362304688	2	526.314646	1050.61474	-0.16839	-8.8625E-05	0.21876	0.00011514	0.050371	2.6511E-05	526.3145994873385	77.83	3.81	77.568	76.933	80.743	-0.26202					205	91	3	0	0	0	0.12602	2	9232	9232;9287		104.75	19.387	1	1463200			32296	1212;1317	22300	22341	37056;37057	37056		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(150)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.3145751953125	2	526.314646	1050.61474	0.39159	0.0002061	-0.31673	-0.0001667	0.074858	3.9399E-05	526.3143210714339	83.873	1.8748	83.662	82.79	84.665	-0.21159					92	43	4	0	0	0	0.021872	4	10135	10123;10135;10147;10159		148.04	54.847	1	2560400			32297	1212;1317	22300	22341	37058;37059;37060;37061	37059		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(150)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.3146362304688	2	526.314646	1050.61474	-0.15259	-8.031E-05	0.10954	5.7652E-05	-0.043051	-2.2659E-05	526.3145196033873	74.941	1.4267	74.677	73.966	75.393	-0.26325					94	33	4	0	0	0	0.021872	4	8851	8839;8851;8864;8876		148.04	48.668	1	4552000			32298	1212;1317	22300	22341	37062;37063;37064;37065	37063		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(120)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.3141479492188	2	526.314646	1050.61474	0.52039	0.00027389	-0.40829	-0.00021489	0.11209	5.8996E-05	526.3142599494698	77.669	2.9652	77.427	77.009	79.974	-0.24232					170	70	3	0	0	0	0.082191	1	9246	9246		116.9	19.431	1	1754800			32299	1212;1317	22300	22341	37066	37066		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(160)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.3141479492188	2	526.314646	1050.61474	0.46938	0.00024704	-0.38412	-0.00020217	0.085265	4.4876E-05	526.3142568070178	83.955	1.7802	83.786	82.948	84.728	-0.16916					82	41	4	0	0	0	0.014988	5	10138	10127;10138;10150;10162;10174		161.9	33.037	1	2259500			32300	1212;1317	22300	22341	37067;37068;37069;37070;37071	37068		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(130)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.3142700195312	2	526.314646	1050.61474	0.50259	0.00026452	-0.72999	-0.0003842	-0.2274	-0.00011968	526.3141059949706	74.728	1.8832	74.545	73.918	75.801	-0.18279					103	45	3	0	0	0	0.047345	6	8800	8782;8788;8800;8811;8823;8834		129.68	43.509	1	4060400			32301	1212;1317	22300	22341	37072;37073;37074;37075;37076;37077	37074		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(93)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.3143920898438	2	526.314646	1050.61474	-0.078232	-4.1175E-05	-0.012962	-6.8221E-06	-0.091194	-4.7997E-05	526.3144821443826	77.645	2.9105	77.483	76.986	79.897	-0.16196					164	68	3	0	0	0	0.17822	2	9280	9261;9280		93.195	8.4169	1	1330400			32302	1212;1317	22300	22341	37078;37079	37079		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(120)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.3142700195312	2	526.314646	1050.61474	0.3846	0.00020242	-0.32065	-0.00016876	0.063948	3.3657E-05	526.3143263809002	83.921	1.5268	83.783	83.341	84.868	-0.13789					79	35	4	0	0	0	0.082191	5	10135	10113;10123;10135;10148;10162		116.9	20.713	1	2368200			32303	1212;1317	22300	22341	37080;37081;37082;37083;37084	37082		37			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_					0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.314646	1050.61474	-1.3658	-0.00071884	1.6271	0.00085639	0.26135	0.00013755	526.3155507281213	83.33	0.64055	83.33	83.051	83.692	0	-0.31025	0.0019739	NaN	161.9	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120540			32304	1212;1317	22300	22341				37			0.09145618787465537
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.317138671875	2	518.317189	1034.61982	0.42058	0.00021799	-0.48174	-0.0002497	-0.061163	-3.1702E-05	518.3167919738611	83.919	1.0671	83.708	83.092	84.159	-0.21159					43	24	3	0	0	0	0.057894	3	10137	10125;10137;10149		125.81	54.518	1	1251200			32305	1212;1317	22300	22342	37085;37086;37087	37086					0.10389922650097105
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.3168334960938	2	518.317189	1034.61982	0.71515	0.00037068	-0.7546	-0.00039112	-0.039446	-2.0446E-05	518.3167252153409	83.891	2.0567	83.722	82.039	84.096	-0.16915					75	47	3	0	0	0	0.016871	2	10133	10133;10144		152.47	81.175	1	1225000			32306	1212;1317	22300	22342	37088;37089	37088					0.10389922650097105
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.318359375	2	518.317189	1034.61982	0.4129	0.00021401	-0.33568	-0.00017399	0.077219	4.0024E-05	518.3168551319277	83.877	0.72694	83.738	83.424	84.151	-0.13855					35	16	3	0	0	0	0.072054	3	10129	10118;10129;10142		120.62	49.325	1	1337400			32307	1212;1317	22300	22342	37090;37091;37092	37091					0.10389922650097105
KLFHLQKP	8	Unmodified	_KLFHLQKP_					0	0	0			REV__ENST00000567019.1_1_15:43489502-43501706:-|nuORF	REV__ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3234558105469	2	505.810919	1009.60729	-0.87962	-0.00044492	-4.0253	-0.0020361	-4.905	-0.002481	505.80892532321155	38.657	0.79156	38.657	38.356	39.148	0					40	20	3	0	0	0	0.027866	1	3328	3328		26.796	1.222	1	427890	+		32308	35311	22301	22343	37093	37093					0.10286647302086749
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7976989746094	2	480.797478	959.580402	0.083778	4.028E-05	-0.44708	-0.00021495	-0.3633	-0.00017467	480.79720505442805	68.842	1.4725	68.842	68.482	69.954	0					101	37	5	0	0	0	0.20967	5	8291	8256;8267;8279;8291;8304		87.754	19.27	1	13242000			32309	8769	22302	22344	37094;37095;37096;37097;37098	37097					0.09899538690910958
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7972717285156	2	480.797478	959.580402	0.47217	0.00022702	-0.82702	-0.00039763	-0.35485	-0.00017061	480.7970363101289	69.17	1.4042	68.877	68.556	69.96	-0.29291					94	35	4	0	0	0	0.23085	5	8268	8268;8279;8292;8304;8317		84.916	27.104	1	12469000			32310	8769	22302	22344	37099;37100;37101;37102;37103	37099					0.09899538690910958
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7974853515625	2	480.797478	959.580402	-0.20467	-9.8406E-05	-0.078149	-3.7574E-05	-0.28282	-0.00013598	480.79740364848067	68.933	1.4266	68.948	68.569	69.995	0.015121					108	36	5	0	0	0	0.11092	6	8180	8180;8190;8201;8213;8226;8241		108.09	19.445	1	11706000			32311	8769	22302	22344	37104;37105;37106;37107;37108;37109	37104					0.09899538690910958
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.797478	959.580402	-0.37882	-0.00018214	0.42337	0.00020356	0.044552	2.1421E-05	480.79750896259713	69.119	0.50372	68.858	68.666	69.169	-0.26165	0.0084092	0.00075068	NaN	108.09	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507670			32312	8769	22302	22344							0.09899538690910958
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.797478	959.580402	0.16121	7.7507E-05	-0.42267	-0.00020322	-0.26146	-0.00012571	480.79714441859915	69.035	0.53639	68.792	68.587	69.123	-0.24277	-0.057399	-6.2873E-05	NaN	108.09	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503350			32313	8769	22302	22344							0.09899538690910958
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.797478	959.580402	0.15883	7.6365E-05	-0.53372	-0.00025661	-0.37489	-0.00018025	480.79708417008374	69.009	0.53568	68.778	68.559	69.095	-0.23047	-0.070846	-0.00016966	NaN	108.09	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519250			32314	8769	22302	22344							0.09899538690910958
KLFIRLYP	8	Unmodified	_KLFIRLYP_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2865600585938	2	525.328945	1048.64334	-1.4202	-0.00074609	-2.8081	-0.0014752	-4.2283	-0.0022212	525.3273257120743	60.76	0.52319	60.76	60.473	60.996	0					24	13	3	0	0	0	0.027866	1	6971	6971		13.775	4.953	1	167140			32315	1567	22303	22345	37110	37110					0.1209610447895102
KLFITAAIV	9	Unmodified	_KLFITAAIV_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.31402587890625	2	488.315503	974.616454	0.71087	0.00034713	-3.6179	-0.0017667	-2.907	-0.0014195	488.31357801724386	25.309	0.84495	25.138	24.821	25.666	-0.17151					43	19	3	0	0	0	0.83071	1	1170	1170		37.159	6.6555	1	697750			32316	3474	22304	22346	37111	37111					0.12812995867750487
KLFITAAIV	9	Unmodified	_KLFITAAIV_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.315503	974.616454	-0.81356	-0.00039727	-2.0299	-0.00099121	-2.8434	-0.0013885	488.31434843980185	25.437	0.75513	25.211	24.931	25.686	-0.22683	0.080362	0.00082897	NaN	37.159	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563330			32317	3474	22304	22346							0.12812995867750487
KLFITAAIV	9	Unmodified	_KLFITAAIV_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.315503	974.616454	-0.11777	-5.751E-05	-2.7676	-0.0013515	-2.8853	-0.001409	488.3139849556544	25.213	0.71981	25.043	24.737	25.457	-0.17078	-0.087618	0.00010849	NaN	37.159	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532320			32318	3474	22304	22346							0.12812995867750487
KLFKDDIRYLL	11	Unmodified	_KLFKDDIRYLL_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.7714538574219	3	475.281772	1422.82349	-0.4022	-0.00019116	2.6335	0.0012516	2.2313	0.0010605	475.28182044417275	28.959	0.519	28.79	28.598	29.117	-0.16897					16	11	2	0	0	0	0.024813	1	1773	1773		14.694	0	1	77235			32319	4192	22305	22347	37112	37112					0.1289873862526747
KLFKFRNN	8	Unmodified	_KLFKFRNN_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8208618164062	2	533.811451	1065.60835	-0.74623	-0.00039835	-0.65908	-0.00035182	-1.4053	-0.00075017	533.8110296892507	68.959	1.0298	68.959	68.68	69.71	0					68	26	4	0	0	0	0.027866	1	8404	8404		35.201	7.3185	1	1555600			32320	2035	22306	22348	37113	37113					0.07816861670994513
KLFKFRNN	8	Unmodified	_KLFKFRNN_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8208618164062	2	533.811451	1065.60835	-0.32989	-0.0001761	-0.30484	-0.00016273	-0.63473	-0.00033882	534.3134184913243	69.871	0.24596	69.871	69.669	69.915	0					7	5	2	0	0	0	0.027866	1	8404	8404		35.201	7.3185	1	38548			32321	2035	22306	22348	37114	37114					0.07816861670994513
KLFKRSKQE	9	Unmodified	_KLFKRSKQE_					0	0	0			REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.348388671875	2	582.348397	1162.68224	2.1578	0.0012566	-2.3526	-0.0013701	-0.19482	-0.00011346	582.346952285642	18.718	0.84281	18.476	18.274	19.117	-0.24256					35	16	4	0	0	0	0.70156	1	317	317		45.972	3.5761	1	252040	+		32322	21106	22307	22349	37115	37115					0.107407850426398
KLFKWHARLFR	11	Unmodified	_KLFKWHARLFR_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3043212890625	3	501.301612	1500.88301	0.20796	0.00010425	1.4776	0.00074074	1.6856	0.00084499	501.6367979083456	106.13	0.52486	105.97	105.77	106.3	-0.16132					45	22	3	0	0	0	1.1077	1	13190	13190		9.2118	0.80454	1	148750	+		32323	20705	22308	22350	37116	37116					0.15260099149941198
KLFKWHARLFR	11	Unmodified	_KLFKWHARLFR_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	501.301612	1500.88301	0.62745	0.00031454	1.6714	0.00083789	2.2989	0.0011524	501.3026463058998	105.92	0.7065	105.92	105.32	106.03	0	-0.0037501	-0.00016013	NaN	9.2118	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154370	+		32324	20705	22308	22350							0.15260099149941198
KLFKWHARLFR	11	Unmodified	_KLFKWHARLFR_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	501.301612	1500.88301	-0.0044967	-2.2542E-06	1.592	0.00079809	1.5875	0.00079584	501.3024155957221	105.86	0.28265	105.86	105.7	105.99	-0.0013199	-0.068003	-0.00027951	NaN	9.2118	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115310	+		32325	20705	22308	22350							0.15260099149941198
KLFKWHARLFR	11	Unmodified	_KLFKWHARLFR_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	501.301612	1500.88301	0.1529	7.6651E-05	2.7558	0.0013815	2.9087	0.0014582	501.30345661917147	106.02	0.79625	106.02	105.41	106.21	0.00014496	0.098598	0.0014707	NaN	9.2118	37	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128450	+		32326	20705	22308	22350							0.15260099149941198
KLFKWHARLFR	11	Unmodified	_KLFKWHARLFR_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	501.301612	1500.88301	0.10653	5.3401E-05	2.0732	0.0010393	2.1797	0.0010927	501.3026310594907	105.98	0.85508	105.86	105.44	106.3	-0.1238	-0.068747	0.00044407	NaN	9.2118	44	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159380	+		32327	20705	22308	22350							0.15260099149941198
KLFKWHARLFR	11	Unmodified	_KLFKWHARLFR_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	501.301612	1500.88301	0.20796	0.00010425	1.4776	0.00074074	1.6856	0.00084499	501.6367979083456	106.13	0.52486	105.97	105.77	106.3	-0.16132	0.041902	-0.00045156	NaN	9.2118	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148750	+		32328	20705	22308	22350							0.15260099149941198
KLFKWVTK	8	Unmodified	_KLFKWVTK_					0	0	0			REV__ENSG00000176571|ENST00000518476|CNBD1	REV__ENSG00000176571|ENST00000518476|CNBD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2973022460938	2	525.328945	1048.64334	-1.792	-0.00094137	-2.2491	-0.0011815	-4.041	-0.0021229	525.3274070212548	28.996	0.41599	28.996	28.696	29.112	0					16	9	2	0	0	0	0.027866	1	1747	1747		47.657	0	1	58993	+		32329	27032	22309	22351	37117	37117					0.12096104478928282
KLFKWVTK	8	Unmodified	_KLFKWVTK_					0	0	0			REV__ENSG00000176571|ENST00000518476|CNBD1	REV__ENSG00000176571|ENST00000518476|CNBD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.296142578125	2	525.328945	1048.64334	-0.77095	-0.000405	-3.5964	-0.0018893	-4.3673	-0.0022943	525.3268328740317	28.869	0.46525	28.873	28.589	29.055	0.0031357					17	10	3	0	0	0	0.027866	1	1712	1712		37.159	6.6555	1	54580	+		32330	27032	22309	22351	37118	37118					0.12096104478928282
KLFLLLNVL	9	Unmodified	_KLFLLLNVL_					0	0	0		ENST00000507465.1_1_5:32388656-32388731:-|nuORF	ENST00000507465.1_1_5:32388656-32388731:-|nuORF	ENST00000507465.1_1_5:32388656-32388731:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7760620117188	2	536.860078	1071.7056	-1.0758	-0.00057753	0.83276	0.00044707	-0.24301	-0.00013046	536.8607132078956	79.26	0.49561	79.087	78.861	79.356	-0.17226					16	11	2	0	0	0	0.024523	1	9807	9807		21.96	5.4867	1	93714			32331	15764	22310	22352	37119	37119					0.1726183082728312
KLFLLVPE	8	Unmodified	_KLFLLVPE_					0	0	0			REV__ENST00000458537.7_1_3:170078288-170078366:+|nuORF	REV__ENST00000458537.7_1_3:170078288-170078366:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.7772216796875	2	479.802229	957.589904	-0.53026	-0.00025442	-4.2616	-0.0020447	-4.7918	-0.0022991	479.80016106242334	27.079	1.6197	26.911	26.594	28.213	-0.16816					69	38	4	0	0	0	0.027866	1	1527	1527		50.025	0	1	7179200	+		32332	32823	22311	22353	37120	37120					0.10941306976428677
KLFLQHEGLK	10	Unmodified	_KLFLQHEGLK_					0	0	0		ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	ENSG00000172123|ENST00000304905|SLFN12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.90679931640625	3	404.908157	1211.70264	0.23488	9.5104E-05	-3.7987	-0.0015381	-3.5639	-0.001443	404.9066402890256	22.752	0.88935	22.676	22.363	23.253	-0.075296					57	19	4	0	0	0	1.0728	1	832	832		36.318	2.1451	1	1793400			32333	8242	22312	22354	37121	37121					0.10525955702473766
KLFLSRRRWQR	11	Unmodified	_KLFLSRRRWQR_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2994995117188	3	515.979421	1544.91643	-0.13109	-6.7641E-05	-3.7719	-0.0019462	-3.903	-0.0020138	515.9778649092486	106.67	0.36098	106.55	106.45	106.81	-0.12381					16	12	2	0	0	0	0.024873	1	13270	13270		6.001	0	1	99691			32334	1472	22313	22355	37122	37122					0.165771009218588
KLFLSRRRWQR	11	Unmodified	_KLFLSRRRWQR_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2949829101562	3	515.979421	1544.91643	0.61959	0.00031969	-4.0168	-0.0020726	-3.3972	-0.0017529	515.9774784639842	106.9	0.4295	106.75	106.56	106.99	-0.15771					30	17	4	0	0	0	0.024873	1	13282	13282		9.6461	0.43434	1	93379			32335	1472	22313	22355	37123	37123					0.165771009218588
KLFNGDEL	8	Unmodified	_KLFNGDEL_					0	0	0			REV__NT5DC1-SEC63|1|fusion	REV__NT5DC1-SEC63|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24462890625	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	1.0009	1	12940	12940		37.159	6.6555	1	4477100	+		32336	37298	22314	22356	37124	37124					0.006137921435083626
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3238525390625	2	523.32386	1044.63317	-0.84744	-0.00044349	-0.019421	-1.0163E-05	-0.86686	-0.00045365	523.3237443108741	67.129	1.6087	67.129	66.798	68.407	0					101	40	5	0	0	0	0.17455	2	8003	8003;8015		94.006	11.766	1	10719000			32337	6961	22315	22357	37125;37126	37125					0.1126349675369056
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3235473632812	2	523.32386	1044.63317	-0.34883	-0.00018255	-0.64909	-0.00033969	-0.99792	-0.00052223	523.3234466656129	67.457	1.4987	67.169	66.872	68.371	-0.28834					98	37	5	0	0	0	0.17455	4	8034	8012;8022;8034;8046		94.006	19.481	1	11496000			32338	6961	22315	22357	37127;37128;37129;37130	37129					0.1126349675369056
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3245239257812	2	523.32386	1044.63317	-0.016974	-8.8831E-06	-0.79411	-0.00041558	-0.81108	-0.00042446	523.3233662662817	67.266	1.3389	67.29	66.942	68.281	0.023911					93	33	5	0	0	0	0.18915	2	7938	7938;7950		90.777	11.326	1	12746000			32339	6961	22315	22357	37131;37132	37131					0.1126349675369056
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.32386	1044.63317	0.32363	0.00016936	-0.91932	-0.0004811	-0.59569	-0.00031174	523.3233544937583	67.404	0.82826	67.149	66.993	67.821	-0.25516	-0.032738	-0.0004409	NaN	94.006	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425690			32340	6961	22315	22357							0.1126349675369056
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.32386	1044.63317	-0.11286	-5.9061E-05	-0.26073	-0.00013645	-0.37359	-0.00019551	523.3234465271564	67.406	0.78679	67.172	66.929	67.716	-0.23375	-0.0094682	0.00024841	NaN	94.006	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472710			32341	6961	22315	22357							0.1126349675369056
KLFQGQLVL	9	Unmodified	_KLFQGQLVL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.32386	1044.63317	-0.30602	-0.00016015	-0.078469	-4.1065E-05	-0.38449	-0.00020121	523.3235685461879	67.42	0.75124	67.182	66.878	67.629	-0.23814	-1.5096E-05	0.00043918	NaN	94.006	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486850			32342	6961	22315	22357							0.1126349675369056
KLFRFDYFVLW	11	Unmodified	_KLFRFDYFVLW_					0	0	0		ENST00000416382.6_1_10:11373873-11374074:+|nuORF	ENST00000416382.6_1_10:11373873-11374074:+|nuORF	ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.8024597167969	3	511.946612	1532.81801	0.64758	0.00033153	-1.9124	-0.00097902	-1.2648	-0.0006475	511.9458843037248	18.681	0.54487	18.525	18.197	18.742	-0.15637					24	10	4	0	0	0	0.024856	1	354	354		5.6988	0	1	65290			32343	13898	22316	22358	37133	37133					0.07291059833460167
KLFRIQGQ	8	Unmodified	_KLFRIQGQ_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.3223876953125	2	495.298176	988.581799	-0.44411	-0.00021997	-3.5681	-0.0017673	-4.0122	-0.0019872	495.29653752011	63.989	0.48073	63.761	63.585	64.066	-0.22773					21	11	2	0	0	0	0.027866	1	7283	7283		11.511	0	1	146240			32344	7462	22317	22359	37134	37134					0.08705172779650638
KLFRQNAL	8	Unmodified	_KLFRQNAL_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28558349609375	2	495.298176	988.581799	0.3769	0.00018668	-2.4631	-0.00122	-2.0862	-0.0010333	495.29713173934823	100.84	1.3723	100.84	100.49	101.86	0					65	31	3	0	0	0	0.027866	1	13029	13029		38.806	5.2906	1	2013500	+		32345	37425	22318	22360	37135	37135					0.0870517277963927
KLFRQNAL	8	Unmodified	_KLFRQNAL_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	495.298176	988.581799	-0.12243	-6.064E-05	-1.3801	-0.00068356	-1.5025	-0.0007442	495.29738787129725	100.89	0.96138	100.89	100.51	101.47	0.0090332	0.15658	0.00041499	NaN	37.159	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1521900	+		32346	37425	22318	22360							0.0870517277963927
KLFRQNAL	8	Unmodified	_KLFRQNAL_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.298176	988.581799	0.33891	0.00016786	-8.8955	-0.0044059	-8.5566	-0.0042381	495.29281265378785	100.53	0.2536	100.53	100.29	100.55	-0.0054398	-0.21147	-0.0070298	NaN	37.159	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51446	+		32347	37425	22318	22360							0.0870517277963927
KLFRQNAL	8	Unmodified	_KLFRQNAL_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	495.298176	988.581799	0.25218	0.0001249	-1.8457	-0.00091416	-1.5935	-0.00078926	495.2972951377112	100.83	1.0364	100.69	100.32	101.36	-0.13364	-0.044445	-4.6207E-05	NaN	37.159	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1114000	+		32348	37425	22318	22360							0.0870517277963927
KLFRQNAL	8	Unmodified	_KLFRQNAL_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.298176	988.581799	0.53419	0.00026458	-2.0379	-0.0010094	-1.5037	-0.0007448	495.297104922922	100.84	1.0579	100.71	100.4	101.46	-0.12576	-0.025181	-0.00023664	NaN	37.159	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836280	+		32349	37425	22318	22360							0.0870517277963927
KLFRQNAL	8	Unmodified	_KLFRQNAL_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.298176	988.581799	0.047689	2.362E-05	-1.5861	-0.00078558	-1.5384	-0.00076196	495.29737473565723	100.93	0.9176	100.76	100.41	101.33	-0.17178	0.022156	0.00021095	NaN	37.159	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505980	+		32350	37425	22318	22360							0.0870517277963927
KLFRTKVLL	9	Unmodified	_KLFRTKVLL_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.3343505859375	2	559.376426	1116.7383	0.47658	0.00026659	-2.7808	-0.0015555	-2.3042	-0.0012889	559.3743516927725	51.531	0.25306	51.413	51.357	51.61	-0.11875					8	6	2	0	0	0	0.024541	1	5314	5314		17.365	9.6747	1	118280			32351	3248	22319	22361	37136	37136					0.18460037950148944
KLFSFTPAW	9	Unmodified	_KLFSFTPAW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MSMS	OPSCC_40_ClassI_Rep-1	4	548.7951049804688	2	548.794935	1095.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.653	1	78.399	77.899	78.899	-0.25471								0	0	0	0.022316	1	9377	9377		127.46	50.688	1				32352	2507	22320	22362	37137	37137					0.031352348282553066
KLFSFTPAW	9	Unmodified	_KLFSFTPAW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MSMS	OPSCC_40_ClassI_Rep-2	5	548.7944946289062	2	548.794935	1095.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.636	1	78.404	77.904	78.904	-0.23141								0	0	0	0.073652	1	9391	9391		98.629	10.875	1				32353	2507	22320	22362	37138	37138					0.031352348282553066
KLFSFTPAW	9	Unmodified	_KLFSFTPAW_					0	0	0		nc|ENSG00000103490|Q9ULZ3-3|PYCARD;ENST00000565022.1_1_16:31212908-31213633:-|nuORF;nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	nc|ENSG00000103490|Q9ULZ3-3|PYCARD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.8637084960938	2	548.794935	1095.57532	-0.22526	-0.00012362	-3.2049	-0.0017588	-3.4302	-0.0018825	548.7934285866294	36.688	0.40232	36.471	36.326	36.729	-0.21661					18	9	3	0	0	0	0.024263	1	2885	2885		42.396	0.96952	1	165720			32354	2507	22320	22362	37139	37139					0.031352348282553066
KLFSFWKRKN	10	Unmodified	_KLFSFWKRKN_					0	0	0		nc|ENSG00000106013|Q92527-2|ANKRD7;ENSG00000106013|ENST00000265224|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9328308105469	3	451.931185	1352.77173	0.91985	0.00041571	2.3203	0.0010486	3.2401	0.0014643	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.1195	2	12334	12334;12359		25.126	3.004	1	1435400			32355	18153	22321	22363	37140;37141	37140					0.10945039722014371
KLFSFWKRKN	10	Unmodified	_KLFSFWKRKN_					0	0	0		nc|ENSG00000106013|Q92527-2|ANKRD7;ENSG00000106013|ENST00000265224|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.93292236328125	3	451.931185	1352.77173	0.95574	0.00043193	2.5109	0.0011347	3.4666	0.0015667	451.93215521600763	97.035	2.3592	96.912	95.552	97.912	-0.12368					183	54	5	0	0	0	1.1195	1	12001	12001		20.837	3.004	1	477030			32356	18153	22321	22363	37142	37142					0.10945039722014371
KLFTDFETW	9	Unmodified	_KLFTDFETW_					0	0	0		ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.7931518554688	2	593.792589	1185.57063	-0.44134	-0.00026207	0.43212	0.00025659	-0.0092193	-5.4743E-06	593.7928061842337	76.136	1.0926	75.968	75.475	76.567	-0.16853					44	26	2	0	0	0	0.1158	1	9017	9017		107.01	37.38	1	1079400			32357	11008	22322	22364	37143	37143					-0.014736941051296526
KLFTDFETW	9	Unmodified	_KLFTDFETW_					0	0	0		ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	593.792589	1185.57063	-0.70364	-0.00041782	-2.0013	-0.0011884	-2.7049	-0.0016062	593.7928868891782	76.373	0.94397	76.105	75.779	76.723	-0.26806	0.037727	-0.0028061	NaN	107.01	45	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1319700			32358	11008	22322	22364							-0.014736941051296526
KLFTDFETW	9	Unmodified	_KLFTDFETW_					0	0	0		ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	ENSG00000271447|ENST00000605424|MMP28	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	593.792589	1185.57063	-0.65924	-0.00039145	1.0813	0.00064209	0.4221	0.00025064	593.7929841463837	76.381	1.2592	76.129	75.564	76.823	-0.25162	0.061969	0.00085481	NaN	107.01	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044700			32359	11008	22322	22364							-0.014736941051296526
KLFTGIEEL	9	Unmodified	_KLFTGIEEL_					0	0	0		ENSG00000126467|ENST00000246801|TSKS;nc|ENSG00000126467|Q9UJT2-2|TSKS	ENSG00000126467|ENST00000246801|TSKS	ENSG00000126467|ENST00000246801|TSKS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7650756835938	2	525.297507	1048.58046	-0.77171	-0.00040538	-4.2492	-0.0022321	-5.0209	-0.0026375	525.2934211371836	79.212	0.79068	79.039	78.777	79.568	-0.17226					19	8	3	0	0	0	0.024319	1	9774	9774		47.657	5.2612	1	87359			32360	4202	22323	22365	37144	37144					0.05811493900228015
KLFTGIEEL	9	Unmodified	_KLFTGIEEL_					0	0	0		ENSG00000126467|ENST00000246801|TSKS;nc|ENSG00000126467|Q9UJT2-2|TSKS	ENSG00000126467|ENST00000246801|TSKS	ENSG00000126467|ENST00000246801|TSKS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.297507	1048.58046	0.25189	0.00013232	-10.889	-0.00572	-10.637	-0.0055877	525.2910681197385	79.294	0.41959	79.144	78.943	79.363	-0.15051	0.052081	-0.003259	NaN	39.253	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110290			32361	4202	22323	22365							0.05811493900228015
KLFVAIVIT	9	Unmodified	_KLFVAIVIT_					0	0	0		ENSG00000121895|ENST00000381938|TMEM156;ENST00000495029.1_1_4:39030149-39033933:-|nuORF	ENSG00000121895|ENST00000381938|TMEM156	ENSG00000121895|ENST00000381938|TMEM156	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.26416015625	2	502.331153	1002.64775	-0.20261	-0.00010178	-0.73327	-0.00036834	-0.93588	-0.00047012	502.3307686685399	75.922	0.30602	75.747	75.659	75.965	-0.17548					11	7	2	0	0	0	0.024506	1	8978	8978		16.473	0	1	76322			32362	3894	22324	22366	37145	37145					0.14653568901837843
KLFVIAQKI	9	Unmodified	_KLFVIAQKI_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.3494873046875	2	530.349877	1058.6852	-0.84955	-0.00045056	0.38641	0.00020493	-0.46314	-0.00024562	530.3499984718165	53.177	1.4928	53.177	52.864	54.357	0					93	41	4	0	0	0	0.014013	2	5728	5728;5740		166.78	65.53	1	4776000			32363	9239	22325	22367	37146;37147	37146					0.15820660167446476
KLFVIAQKI	9	Unmodified	_KLFVIAQKI_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.3500366210938	2	530.349877	1058.6852	-0.9467	-0.00050208	0.51343	0.0002723	-0.43327	-0.00022978	530.3500335943421	53.224	1.6864	53.077	52.758	54.445	-0.14723					101	46	4	0	0	0	0.013333	2	5717	5717;5729		176.41	55.542	1	4238100			32364	9239	22325	22367	37148;37149	37148					0.15820660167446476
KLFVIAQKI	9	Unmodified	_KLFVIAQKI_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.3497924804688	2	530.349877	1058.6852	-0.36963	-0.00019603	0.033808	1.793E-05	-0.33582	-0.0001781	530.3497794244872	53.014	1.1413	53.109	52.83	53.971	0.095669					77	31	4	0	0	0	0.047345	2	5636	5636;5647		129.68	52.365	1	4029600			32365	9239	22325	22367	37150;37151	37150					0.15820660167446476
KLGAALQV	8	Unmodified	_KLGAALQV_					0	0	0		ENST00000568535.1_1_15:73028121-73029372:+|nuORF;nc|ENSG00000140463|Q96RK4-3|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENSG00000140463|ENST00000268057|BBS4	ENST00000568535.1_1_15:73028121-73029372:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.25543212890625	2	400.255446	798.496338	0.09774	3.9121E-05	0.27428	0.00010978	0.37202	0.0001489	400.25537734210667	47.991	0.92357	47.838	47.51	48.433	-0.15301					52	27	3	0	0	0	0.088295	1	4835	4835		163.84	5.855	1	2692200			32366	18336;16984	22326	22368	37152	37152					0.08903007593994516
KLGAALQV	8	Unmodified	_KLGAALQV_					0	0	0		ENST00000568535.1_1_15:73028121-73029372:+|nuORF;nc|ENSG00000140463|Q96RK4-3|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENSG00000140463|ENST00000268057|BBS4	ENST00000568535.1_1_15:73028121-73029372:+|nuORF;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	400.255446	798.496338	2.0944	0.00083831	-1.759	-0.00070404	0.33545	0.00013427	400.2545926959383	47.698	0.80431	47.757	47.489	48.294	0.059097	-0.053401	-0.0008519	NaN	163.84	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2742300			32367	18336;16984	22326	22368							0.08903007593994516
KLGCLMEAV	9	Unmodified	_KLGCLMEAV_					0	0	0			REV__nc|ENSG00000179994|Q495Y7|SPDYE7P	REV__nc|ENSG00000179994|Q495Y7|SPDYE7P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.27899169921875	2	482.253731	962.492909	-0.19294	-9.3044E-05	-1.6995	-0.0008196	-1.8925	-0.00091265	482.25176665897084	81.394	1.8078	81.394	80.899	82.707	0					101	43	3	0	0	0	0.024323	1	10301	10301		53.351	21.397	1	98249	+		32368	23638	22327	22369	37153	37153					0.010162534334540396
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1	ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.3009033203125	2	487.30005	972.585547	0.10767	5.247E-05	-0.95225	-0.00046403	-0.84457	-0.00041156	487.29940920685783	58.07	1.064	58.07	57.796	58.86	0					74	28	3	0	0	0	0.062622	5	6547	6547;6559;6571;6583;6607		124.08	30.885	1	49582000			32369	18285;736	22328	22370	37154;37155;37156;37157;37158	37154					0.09815797762848888
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1	ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.3010559082031	2	487.30005	972.585547	-0.74615	-0.0003636	0.30823	0.0001502	-0.43792	-0.0002134	487.3001809839185	58.41	1.3754	58.223	57.847	59.222	-0.18705					77	37	3	0	0	0	0.03666	5	6612	6562;6574;6586;6612;6624		136.27	39.165	1	42410000			32370	18285;736	22328	22370	37159;37160;37161;37162;37163	37162					0.09815797762848888
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1	ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.3003234863281	2	487.30005	972.585547	-0.65665	-0.00031999	-0.11526	-5.6165E-05	-0.77191	-0.00037615	487.29984913653556	58.01	1.3809	58.101	57.759	59.14	0.091217					100	37	3	0	0	0	0.053401	6	6482	6458;6470;6482;6494;6506;6518		127.46	39.707	1	46580000			32371	18285;736	22328	22370	37164;37165;37166;37167;37168;37169	37166					0.09815797762848888
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1	ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.301025390625	2	487.30005	972.585547	-0.19297	-9.4036E-05	0.41408	0.00020178	0.2211	0.00010774	487.3000808715041	58.288	0.81754	58.111	57.895	58.712	-0.17776					41	19	3	0	0	0	0.062622	2	6393	6393;6405		124.08	21.816	1	1841200			32372	18285;736	22328	22370	37170;37171	37170					0.09815797762848888
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1	ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.29852294921875	2	487.30005	972.585547	0.010091	4.9172E-06	0.2598	0.0001266	0.26989	0.00013152	487.3001688400615	58.249	0.78873	58.059	57.871	58.66	-0.19018					37	19	3	0	0	0	0.17845	1	6392	6392		93.143	10.903	1	1866900			32373	18285;736	22328	22370	37172	37172					0.09815797762848888
KLGFCAQSV	9	Unmodified	_KLGFCAQSV_					0	0	0		ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	ENST00000287546.8_1_3:184769915-184770134:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2608947753906	2	476.74967	951.484787	-0.69411	-0.00033092	-1.7807	-0.00084895	-2.4748	-0.0011799	476.74944577931524	28.388	0.20053	28.142	28.081	28.281	-0.24524					7	4	2	0	0	0	0.024506	1	1666	1666		16.473	8.7829	1	48145			32374	11765	22329	22371	37173	37173					0.007104425083525712
KLGGSLAAL	9	Unmodified	_KLGGSLAAL_					0	0	0		ENST00000528882.5_1_11:57067274-57087552:-|nuORF;TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant;ENSG00000149115|ENST00000358252|TNKS1BP1	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENST00000528882.5_1_11:57067274-57087552:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.5594787597656	2	415.260728	828.506903	-0.68195	-0.00028319	1.6509	0.00068557	0.96899	0.00040239	415.2611485786506	26.939	0.17203	26.697	26.614	26.786	-0.24217					5	3	2	0	0	0	0.024443	1	1436	1436		26.796	6.3143	1	17139			32375	6064	22330	22372	37174	37174					0.08578990248417995
KLGHRHGID	9	Unmodified	_KLGHRHGID_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.27099609375	2	516.788507	1031.56246	-0.13782	-7.1222E-05	2.1888	0.0011311	2.0509	0.0010599	517.289856601755	49.067	0.18723	48.885	48.773	48.96	-0.18206					6	4	2	0	0	0	0.024405	1	4913	4913		44.117	7.67	1	44587			32376	10571	22331	22373	37175	37175					0.047942164887672334
KLGHTERK	8	Unmodified	_KLGHTERK_					0	0	0		ENST00000607652.5_1_1:150235337-150235619:+|nuORF	ENST00000607652.5_1_1:150235337-150235619:+|nuORF	ENST00000607652.5_1_1:150235337-150235619:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2716979980469	2	484.785433	967.556313	-0.62326	-0.00030215	-2.9342	-0.0014225	-3.5575	-0.0017246	484.7839445461444	32.521	0.60108	32.521	32.34	32.941	0					24	15	2	0	0	0	0.027866	1	2313	2313		38.806	5.2906	1	203900			32377	17580	22332	22374	37176	37176					0.07123698257225897
KLGIQLESPPI	11	Unmodified	_KLGIQLESPPI_					0	0	0			REV__ENST00000568857.5_3_16:84164853-84177949:-|nuORF	REV__ENST00000568857.5_3_16:84164853-84177949:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.856689453125	2	597.858264	1193.70197	-0.39778	-0.00023782	-2.4142	-0.0014433	-2.8119	-0.0016811	598.3585984414767	90.781	2.8287	90.792	88.918	91.747	0.011276					183	67	3	0	0	0	1.0075	1	11455	11455		35.152	0.97948	1	2105300	+		32378	35356	22333	22375	37177	37177					0.11287116262769814
KLGKERLEA	9	Unmodified	_KLGKERLEA_					0	0	0		ENST00000446144.2_1_15:20773467-20778061:+|nuORF;nc|ENSG00000290359|Q0D2H9|GOLGA8DP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000261739|ENST00000562295|GOLGA8S;ENSG00000183629|ENST00000525590|GOLGA8G	ENST00000446144.2_1_15:20773467-20778061:+|nuORF	ENST00000446144.2_1_15:20773467-20778061:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8095092773438	2	522.314023	1042.61349	-0.48797	-0.00025487	-0.14026	-7.326E-05	-0.62823	-0.00032813	522.3118784052439	53.873	0.88603	53.726	53.346	54.232	-0.14723					65	24	5	0	0	0	0.024374	1	5819	5819		40.778	2.9666	1	3995900			32379	6353	22334	22376	37178	37178					0.0938912074293512
KLGKKGVK	8	Unmodified	_KLGKKGVK_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.26611328125	2	429.300188	856.585822	0.17621	7.5647E-05	-0.24205	-0.00010391	-0.065837	-2.8264E-05	429.2999684103101	24.243	0.4222	24.068	23.918	24.34	-0.17484					13	9	2	0	0	0	0.027866	1	1014	1014		18.324	0	1	121390			32380	1691	22335	22377	37179	37179					0.15179262273375116
KLGKKKSNLHK	11	Unmodified	_KLGKKKSNLHK_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2644348144531	3	427.610223	1279.80884	-0.47218	-0.00020191	0.56618	0.0002421	0.094004	4.0197E-05	427.61047984502204	54.312	0.65778	54.312	53.835	54.492	0					25	18	2	0	0	0	0.024723	1	5953	5953		35.178	17.345	1	209690	+		32381	26033	22336	22378	37180	37180					0.18012711267783743
KLGLIHNQHGT	11	Unmodified	_KLGLIHNQHGT_					0	0	0			REV__ENST00000524188.5_1_2:46755175-46763012:-|nuORF	REV__ENST00000524188.5_1_2:46755175-46763012:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2032775878906	3	406.563161	1216.66765	0.89539	0.00036403	-1.178	-0.00047894	-0.28262	-0.0001149	406.56247881286095	22.944	0.46451	22.753	22.386	22.851	-0.19117					10	9	2	0	0	0	0.024723	1	823	823		12.433	0	1	126740	+		32382	34375	22337	22379	37181	37181					0.06798712894487835
KLGLKPGKL	9	Unmodified	_KLGLKPGKL_					0	0	0			REV__AHNAK2|p.D779G|1|0.35|ENSG00000185567|chr14:104953115-104953115|T/C|missense_variant	REV__AHNAK2|p.D779G|1|0.35|ENSG00000185567|chr14:104953115-104953115|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.3290710449219	2	477.328945	952.643337	0.55973	0.00026718	-0.35501	-0.00016946	0.20472	9.7718E-05	477.3286239558356	78.319	2.5845	78.319	78.042	80.626	0					138	61	4	0	0	0	0.67308	1	9706	9706		47.916	0	1	3617800	+		32383	19092	22338	22380	37182	37182					0.16512104478943002
KLGLTHISF	9	Unmodified	_KLGLTHISF_					0	0	0			REV__ENST00000366812.5_1_1:226334087-226334237:-|nuORF	REV__ENST00000366812.5_1_1:226334087-226334237:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2884216308594	2	508.300384	1014.58622	0.035274	1.793E-05	-2.066	-0.0010502	-2.0308	-0.0010322	508.29834477797897	52.873	0.32183	52.746	52.591	52.913	-0.12706					13	7	3	0	0	0	0.024495	1	5497	5497		26.693	17.871	1	148330	+		32384	30988	22339	22381	37183	37183					0.07950637202566213
KLGLTHISF	9	Unmodified	_KLGLTHISF_					0	0	0			REV__ENST00000366812.5_1_1:226334087-226334237:-|nuORF	REV__ENST00000366812.5_1_1:226334087-226334237:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.300384	1014.58622	-0.56235	-0.00028584	3.4988	0.0017784	2.9364	0.0014926	508.30213069549603	52.822	0.78906	52.822	52.513	53.302	0	0.050781	0.00045568	NaN	26.693	59	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1195100	+		32385	30988	22339	22381							0.07950637202566213
KLGLTHISF	9	Unmodified	_KLGLTHISF_					0	0	0			REV__ENST00000366812.5_1_1:226334087-226334237:-|nuORF	REV__ENST00000366812.5_1_1:226334087-226334237:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.300384	1014.58622	0.032345	1.6441E-05	2.9234	0.001486	2.9557	0.0015024	508.3018375753782	52.667	0.85794	52.759	52.404	53.262	0.091938	-0.012419	-0.00012929	NaN	26.693	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1508000	+		32386	30988	22339	22381							0.07950637202566213
KLGPALTRKV	10	Unmodified	_KLGPALTRKV_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.7986450195312	2	541.855858	1081.69716	-1.053	-0.00057059	0.7524	0.00040769	-0.30063	-0.0001629	541.8561287378985	32.59	1.0219	32.432	31.904	32.926	-0.15772					58	24	4	0	0	0	0.03519	1	2165	2165		25.574	9.1009	1	965050			32387	3160	22340	22382	37184	37184					0.1595827691062368
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7972106933594	2	462.797478	923.580402	-0.5193	-0.00024033	-0.075945	-3.5147E-05	-0.59525	-0.00027548	462.79724559428115	32.375	1.1065	32.375	31.989	33.096	0					78	28	4	0	0	0	0.14181	3	2239	2229;2239;2253		101.25	29.957	1	2114000			32388	1458	22341	22383	37185;37186;37187	37186					0.11555538690890899
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7974548339844	2	462.797478	923.580402	-0.41674	-0.00019287	-0.11426	-5.2878E-05	-0.531	-0.00024574	462.79725015338107	32.323	1.1457	32.335	31.902	33.048	0.011799					86	29	4	0	0	0	0.12914	4	2211	2201;2211;2224;2235		104.06	43.763	1	2324800			32389	1458	22341	22383	37188;37189;37190;37191	37189					0.11555538690890899
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7974853515625	2	462.797478	923.580402	0.22946	0.00010619	-0.80924	-0.00037452	-0.57979	-0.00026832	462.79692503834076	32.172	1.1628	32.235	31.839	33.002	0.062885					83	29	4	0	0	0	0.1158	3	2149	2149;2160;2172		107.01	35.712	1	2169300			32390	1458	22341	22383	37192;37193;37194	37192					0.11555538690890899
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.797478	923.580402	0.020108	9.3061E-06	2.0937	0.00096894	2.1138	0.00097825	462.7972980120882	32.383	0.63235	32.147	31.824	32.457	-0.23666	-0.1135	0.0020962	NaN	107.01	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173630			32391	1458	22341	22383							0.11555538690890899
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.797478	923.580402	0.37013	0.00017129	2.474	0.001145	2.8442	0.0013163	462.79708298409105	32.397	0.76248	32.205	31.814	32.576	-0.19261	-0.055591	0.0024483	NaN	107.01	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143070			32392	1458	22341	22383							0.11555538690890899
KLGPAPKTL	9	Unmodified	_KLGPAPKTL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.797478	923.580402	-0.29281	-0.00013551	0.10378	4.803E-05	-0.18903	-8.748E-05	462.797328797643	32.423	0.66008	32.266	31.904	32.564	-0.15772	0.0052922	0.00025435	NaN	107.01	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161840			32393	1458	22341	22383							0.11555538690890899
KLGPDYVSD	9	Unmodified	_KLGPDYVSD_					0	0	0			REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.3009338378906	2	497.248015	992.481476	-0.26929	-0.0001339	0.51602	0.00025659	0.24673	0.00012268	497.248188470617	63.797	1.0512	63.569	63.251	64.302	-0.22773					45	26	3	0	0	0	0.024523	1	7334	7334		15.642	0	1	614020	+		32394	26340	22342	22384	37195	37195					-0.015065290646703033
KLGPDYVSD	9	Unmodified	_KLGPDYVSD_					0	0	0			REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.248015	992.481476	1.6959	0.00084328	3.0956	0.0015393	4.7915	0.0023826	497.24952895831893	63.769	0.43235	63.769	63.522	63.954	0	0.10587	0.0023699	NaN	26.693	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116470	+		32395	26340	22342	22384							-0.015065290646703033
KLGPDYVSD	9	Unmodified	_KLGPDYVSD_					0	0	0			REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.248015	992.481476	0.071989	3.5796E-05	4.635	0.0023047	4.707	0.0023405	497.2502107282894	63.987	0.68641	63.735	63.336	64.023	-0.25141	0.072537	0.0039008	NaN	26.693	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111710	+		32396	26340	22342	22384							-0.015065290646703033
KLGPDYVSD	9	Unmodified	_KLGPDYVSD_					0	0	0			REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	REV__ENST00000380333.5_1_X:15706803-15711120:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	497.248015	992.481476	0.010826	5.3832E-06	-0.017956	-8.9284E-06	-0.0071296	-3.5452E-06	497.2478883872692	63.877	0.87527	63.618	63.352	64.227	-0.25824	-0.044286	-0.00072653	NaN	26.693	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687700	+		32397	26340	22342	22384							-0.015065290646703033
KLGPFQSPN	9	Unmodified	_KLGPFQSPN_					0	0	0			REV__ENST00000514442.5_1_5:149772876-149773050:+|nuORF	REV__ENST00000514442.5_1_5:149772876-149773050:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2665100097656	2	494.266542	986.51853	-1.0391	-0.00051359	0.81159	0.00040114	-0.2275	-0.00011245	494.2667439215945	48.896	0.43497	48.97	48.807	49.242	0.074196					18	11	2	0	0	0	0.024447	1	4939	4939		25.574	7.2496	1	302310	+		32398	34173	22343	22385	37196	37196					0.024731872717552505
KLGPFQSPN	9	Unmodified	_KLGPFQSPN_					0	0	0			REV__ENST00000514442.5_1_5:149772876-149773050:+|nuORF	REV__ENST00000514442.5_1_5:149772876-149773050:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.266542	986.51853	0.39593	0.00019569	-0.37064	-0.00018319	0.02529	1.25E-05	494.266245182536	49.056	0.4948	49.056	48.83	49.324	0	0.01645	-0.00055649	NaN	30.318	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378790	+		32399	34173	22343	22385							0.024731872717552505
KLGRGVLPE	9	Unmodified	_KLGRGVLPE_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2815856933594	2	484.798009	967.581465	-1.2102	-0.00058672	1.097	0.00053183	-0.11321	-5.4884E-05	484.7985047851196	36.075	0.8446	36.033	35.608	36.453	-0.042454					65	23	4	0	0	0	0.024381	1	2879	2879		10.265	3.0719	1	2609700	+		32400	20892	22344	22386	37197	37197					0.09637753059803345
KLGRKLNP	8	Unmodified	_KLGRKLNP_					0	0	0		ENSG00000150628|ENST00000280191|SPATA4	ENSG00000150628|ENST00000280191|SPATA4	ENSG00000150628|ENST00000280191|SPATA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.77191162109375	2	463.300719	924.586885	-0.45012	-0.00020854	2.0906	0.00096859	1.6405	0.00076005	463.30134339454503	23.231	0.35784	23.231	23.165	23.523	0					11	8	2	0	0	0	0.027866	1	899	899		25.45	7.1258	1	67685			32401	6145	22345	22387	37198	37198					0.12157476642278198
KLGRLIAAPFK	11	Unmodified	_KLGRLIAAPFK_					0	0	0			REV__ENST00000503078.5_1_5:176938794-176943460:-|nuORF	REV__ENST00000503078.5_1_5:176938794-176943460:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	405.2633361816406	3	405.264164	1212.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.73	1	113.6	113.1	114.1	-0.12832								0	0	0	1.7024	1	13755	13755		6.001	1.6622	1		+		32402	27557	22346	22388	37199	37199					0.17278825353105276
KLGSSWLDL	9	Unmodified	_KLGSSWLDL_					0	0	0			REV__nc|ENSG00000152359|Q8NA72-3|POC5	REV__nc|ENSG00000152359|Q8NA72-3|POC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2357177734375	2	509.782025	1017.5495	-1.0417	-0.00053105	-3.1413	-0.0016014	-4.183	-0.0021324	509.78056819383045	31.147	0.50747	31.147	30.961	31.469	0					24	11	3	0	0	0	0.024447	1	2090	2090		32.812	22.547	1	229930	+		32403	24834	22347	22389	37200	37200					0.04142340586008686
KLGSSWLDL	9	Unmodified	_KLGSSWLDL_					0	0	0			REV__nc|ENSG00000152359|Q8NA72-3|POC5	REV__nc|ENSG00000152359|Q8NA72-3|POC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.782025	1017.5495	-0.37176	-0.00018952	-4.5978	-0.0023439	-4.9695	-0.0025334	509.78018758546506	31.166	0.53205	30.925	30.541	31.073	-0.24109	-0.06343	-0.00069393	NaN	32.812	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149700	+		32404	24834	22347	22389							0.04142340586008686
KLGSSWLDL	9	Unmodified	_KLGSSWLDL_					0	0	0			REV__nc|ENSG00000152359|Q8NA72-3|POC5	REV__nc|ENSG00000152359|Q8NA72-3|POC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.782025	1017.5495	-0.61817	-0.00031513	-3.8698	-0.0019728	-4.488	-0.0022879	509.7803750987253	31.108	0.5378	30.923	30.446	30.984	-0.18503	-0.065078	4.8259E-05	NaN	32.812	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279340	+		32405	24834	22347	22389							0.04142340586008686
KLGSSWLDL	9	Unmodified	_KLGSSWLDL_					0	0	0			REV__nc|ENSG00000152359|Q8NA72-3|POC5	REV__nc|ENSG00000152359|Q8NA72-3|POC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.782025	1017.5495	-0.33052	-0.00016849	-4.3558	-0.0022205	-4.6864	-0.002389	509.7799555599404	31.116	0.44283	30.963	30.681	31.124	-0.15231	-0.025017	-0.00044727	NaN	32.812	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159130	+		32406	24834	22347	22389							0.04142340586008686
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2817077636719	2	450.28166	898.548768	0.28259	0.00012724	-1.4545	-0.00065492	-1.1719	-0.00052768	450.28116727189825	50.899	1.9279	50.899	50.544	52.472	0					181	53	6	0	0	0	0.020687	10	5395	5338;5347;5359;5371;5383;5395;5407;5421;5440;5453		148.99	56.166	1	102170000			32407	10133	22348	22390	37201;37202;37203;37204;37205;37206;37207;37208;37209;37210	37206					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2813415527344	2	450.28166	898.548768	-0.092272	-4.1549E-05	-1.288	-0.00057996	-1.3803	-0.00062151	450.2812960923184	51.066	1.7382	50.916	50.626	52.364	-0.14916					151	48	5	0	0	0	0.03666	9	5389	5343;5353;5365;5377;5389;5401;5413;5428;5447		136.27	51.353	1	100230000			32408	10133	22348	22390	37211;37212;37213;37214;37215;37216;37217;37218;37219	37215					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2816162109375	2	450.28166	898.548768	-0.58926	-0.00026533	-0.95876	-0.00043171	-1.548	-0.00069704	450.28146367748	50.821	1.8504	50.902	50.543	52.393	0.08099					164	50	5	0	0	0	0.077175	10	5346	5251;5260;5272;5284;5296;5308;5321;5334;5346;5359		118.74	49.065	1	105730000			32409	10133	22348	22390	37220;37221;37222;37223;37224;37225;37226;37227;37228;37229	37228					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.281494140625	2	450.28166	898.548768	0.84433	0.00038019	-1.0997	-0.00049517	-0.25535	-0.00011498	450.28112283941067	50.953	1.3882	50.841	50.488	51.876	-0.11163					93	36	4	0	0	0	0.053401	6	5200	5190;5200;5212;5224;5237;5252		127.46	56.166	1	18256000			32410	10133	22348	22390	37230;37231;37232;37233;37234;37235	37231					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2818908691406	2	450.28166	898.548768	0.14321	6.4487E-05	-0.44759	-0.00020154	-0.30438	-0.00013705	450.2814254811188	51.171	1.2719	50.895	50.589	51.861	-0.27643					88	33	4	0	0	0	0.020687	5	5212	5212;5223;5235;5247;5260		148.99	73.278	1	16047000			32411	10133	22348	22390	37236;37237;37238;37239;37240	37236					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.2817687988281	2	450.28166	898.548768	0.72885	0.00032819	-1.0153	-0.00045717	-0.28646	-0.00012899	450.28112666649923	51.032	1.3579	50.851	50.498	51.856	-0.18071					93	35	4	0	0	0	0.014918	6	5229	5196;5205;5217;5229;5242;5256		162.25	55.69	1	14362000			32412	10133	22348	22390	37241;37242;37243;37244;37245;37246	37244					0.09543545936946884
KLGTFDPKV	9	Unmodified	_KLGTFDPKV_					0	0	0			REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2763671875	2	502.792392	1003.57023	-0.7877	-0.00039605	-0.90339	-0.00045422	-1.6911	-0.00085027	502.79172241216526	65.092	0.47974	64.837	64.542	65.022	-0.25563					26	11	3	0	0	0	0.024025	1	7392	7392		52.937	4.9772	1	558740	+		32413	19919	22349	22391	37247	37247					0.06858930965654508
KLGTINKTT	9	Unmodified	_KLGTINKTT_					0	0	0			REV__ENSG00000134115|ENST00000446702|CNTN6	REV__ENSG00000134115|ENST00000446702|CNTN6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265625	2	488.295299	974.576045	-1.164	-0.00056839	3.9002	0.0019045	2.7362	0.0013361	488.2969301440466	55.576	0.46918	55.419	55.244	55.713	-0.15655					14	12	2	0	0	0	0.024374	1	5992	5992		58.782	43.14	1	208920	+		32414	23422	22350	22392	37248	37248					0.08774029477308432
KLGWGPLL	8	Unmodified	_KLGWGPLL_					0	0	0		ENST00000455508.1_1_21:32639260-32649101:-|nuORF	ENST00000455508.1_1_21:32639260-32649101:-|nuORF	ENST00000455508.1_1_21:32639260-32649101:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.787841796875	2	442.273638	882.532724	-0.36147	-0.00015987	-3.1268	-0.0013829	-3.4882	-0.0015427	442.2721197474953	43.121	0.50013	42.884	42.561	43.061	-0.23737					31	12	4	0	0	0	0.027866	1	3917	3917		28.254	0	1	297910			32415	14581	22351	22393	37249	37249					0.08675884490708086
KLGYPQQV	8	Unmodified	_KLGYPQQV_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7635803222656	2	466.763635	931.512717	0.0087534	4.0858E-06	0.14549	6.7908E-05	0.15424	7.1994E-05	466.76360690637006	69.688	0.64894	69.688	69.344	69.993	0					46	15	4	0	0	0	0.30538	2	8395	8395;8419		110.34	6.8718	1	3720100	+		32416	21433	22352	22394	37250;37251	37250					0.04422088760088627
KLHAKKAR	8	Unmodified	_KLHAKKAR_					0	0	0			REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	REV__nc|ENSG00000165863|Q8WW14-2|SPMIP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.29058837890625	2	476.314161	950.613768	0.35153	0.00016744	0.70291	0.00033481	1.0544	0.00050225	476.3144661988387	18.653	0.69197	18.449	18.262	18.954	-0.20371					14	13	2	0	0	0	0.027866	1	359	359		25.45	0	1	24161	+		32417	25939	22353	22395	37252	37252					0.13648585253463352
KLHDINAQL	9	Unmodified	_KLHDINAQL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2986450195312	2	526.298373	1050.58219	-1.6331	-0.00085949	0.66308	0.00034898	-0.97	-0.00051051	526.2988621855435	38.428	1.2837	38.428	37.936	39.219	0					87	35	5	0	0	0	0.030064	3	3224	3224;3236;3251		141.52	25.955	1	4147000			32418	2165	22354	22396	37253;37254;37255	37253					0.058925477088678235
KLHDINAQL	9	Unmodified	_KLHDINAQL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.29833984375	2	526.298373	1050.58219	-0.91477	-0.00048144	0.4567	0.00024036	-0.45807	-0.00024108	526.2985104307995	38.4	1.1623	38.317	38.017	39.179	-0.082516					67	31	3	0	0	0	0.013337	2	3212	3202;3212		176.44	38.382	1	3552300			32419	2165	22354	22396	37256;37257	37257					0.058925477088678235
KLHDINAQL	9	Unmodified	_KLHDINAQL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2981567382812	2	526.298373	1050.58219	-1.2417	-0.00065349	0.74659	0.00039293	-0.49507	-0.00026056	526.2986702584783	38.625	1.2736	38.652	38.365	39.638	0.027275					68	34	3	0	0	0	0.01896	3	3202	3191;3202;3214		150.36	38.254	1	3693800			32420	2165	22354	22396	37258;37259;37260	37259					0.058925477088678235
KLHDINAQL	9	Unmodified	_KLHDINAQL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.298373	1050.58219	-1.2182	-0.00064115	1.5261	0.00080316	0.30782	0.00016201	526.2990553809044	38.538	0.50904	38.359	38.136	38.645	-0.17929	-0.063203	0.00089091	NaN	176.44	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	572490			32421	2165	22354	22396							0.058925477088678235
KLHDINAQL	9	Unmodified	_KLHDINAQL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.298373	1050.58219	-0.83719	-0.00044061	0.96023	0.00050537	0.12304	6.4757E-05	526.2987458999798	38.618	0.5353	38.396	38.153	38.688	-0.22149	-0.025335	0.00029533	NaN	176.44	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580890			32422	2165	22354	22396							0.058925477088678235
KLHDINAQL	9	Unmodified	_KLHDINAQL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.298373	1050.58219	-0.16715	-8.7968E-05	0.39703	0.00020896	0.22989	0.00012099	526.2982774309352	38.596	0.55938	38.378	38.117	38.676	-0.21848	-0.043797	-0.0002975	NaN	176.44	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548650			32423	2165	22354	22396							0.058925477088678235
KLHDNLAIQ	9	Unmodified	_KLHDNLAIQ_					0	0	0			REV__nc|ENSG00000136160|P24530-2|EDNRB	REV__nc|ENSG00000136160|P24530-2|EDNRB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2985229492188	2	526.298373	1050.58219	-0.91477	-0.00048144	0.4567	0.00024036	-0.45807	-0.00024108	526.2985104307995	38.4	1.1623	38.317	38.017	39.179	-0.082516					67	31	3	0	0	0	0.2101	1	3227	3227		87.696	7.9839	1	3552300	+		32424	23633	22355	22397	37261	37261					0.05892547708845086
KLHDPVSSVD	10	Unmodified	_KLHDPVSSVD_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.826416015625	2	548.785296	1095.55604	-0.40254	-0.00022091	4.148	0.0022764	3.7454	0.0020554	548.7874823880793	94.957	1.4968	94.961	94.607	96.104	0.0033722					41	34	2	0	0	0	0.03519	1	12075	12075		24.519	3.5723	1	256900	+		32425	23025	22356	22398	37262	37262					0.012082337467290927
KLHENEEED	9	Unmodified	_KLHENEEED_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.8074951171875	2	571.75165	1141.48875	0.33276	0.00019025	4.4565	0.002548	4.7892	0.0027382	571.7542085483342	73.957	0.30013	73.957	73.784	74.084	0					10	6	2	0	0	0	0.024381	1	9036	9036		15.642	0	1	120520	+		32426	24041	22357	22399	37263	37263					-0.07633841254914842
KLHFHPSN	8	Unmodified	_KLHFHPSN_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MSMS	OPSCC_39_ClassI_Rep-3	3	490.2586669921875	2	490.259051	978.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.47	1	102.47	101.97	102.97	-0.0054474								0	0	0	0.92657	1	13051	13051		25.45	1.2474	1				32427	5806	22358	22400	37264	37264					0.013437401944202065
KLHFHPSN	8	Unmodified	_KLHFHPSN_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2610778808594	2	490.259051	978.503549	-0.1158	-5.677E-05	1.82	0.00089227	1.7042	0.0008355	490.2609967597966	102.75	2.0622	102.62	102.27	104.33	-0.12931					93	50	4	0	0	0	1.0338	1	12775	12775		31.955	1.4512	1	327450			32428	5806	22358	22400	37265	37265					0.013437401944202065
KLHGGIDI	8	Unmodified	_KLHGGIDI_					0	0	0		nc|ENSG00000157326|Q9BTZ2-2|DHRS4;ENSG00000157326|ENST00000313250|DHRS4;nc|ENSG00000157326|Q9BTZ2-7|DHRS4;ENSG00000187630|ENST00000335125|DHRS4L2;nc|ENSG00000187630|Q6PKH6-2|DHRS4L2	nc|ENSG00000157326|Q9BTZ2-2|DHRS4;ENSG00000187630|ENST00000335125|DHRS4L2	ENSG00000187630|ENST00000335125|DHRS4L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.2166748046875	2	426.750527	851.486502	-0.032261	-1.3767E-05	1.1986	0.00051149	1.1663	0.00049772	426.7509258301638	26.81	0.389	26.641	26.42	26.809	-0.16816					13	8	2	0	0	0	0.027866	1	1420	1420		24.203	13.337	1	54426			32429	6590;9644	22359	22401	37266	37266					0.054818195886127796
KLHGRRPE	8	Unmodified	_KLHGRRPE_					0	0	0			REV__ENST00000228872.8_1_12:12870178-12870277:+|nuORF	REV__ENST00000228872.8_1_12:12870178-12870277:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7508239746094	2	496.79105	991.567546	0.54996	0.00027322	-2.4	-0.0011923	-1.85	-0.00091908	496.7915944603615	39.961	0.58088	39.961	39.733	40.314	0					49	15	4	0	0	0	0.027866	1	3530	3530		31.955	13.63	1	1038800	+		32430	29394	22360	22402	37267	37267					0.07142520351362691
KLHGRRPE	8	Unmodified	_KLHGRRPE_					0	0	0			REV__ENST00000228872.8_1_12:12870178-12870277:+|nuORF	REV__ENST00000228872.8_1_12:12870178-12870277:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.75128173828125	2	496.79105	991.567546	-0.65204	-0.00032393	-1.8441	-0.00091614	-2.4962	-0.0012401	496.7923279835523	40.217	0.58191	40.24	40.013	40.595	0.023006					42	15	4	0	0	0	0.027866	1	3508	3508		31.955	8.9124	1	770000	+		32431	29394	22360	22402	37268	37268					0.07142520351362691
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.P103Rfs*5|1|0.33|ENSG00000173914|chr11:66676771-66676772|CG/-|frameshift_variant;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2954406738281	2	497.295633	992.576714	0.43449	0.00021607	-1.0931	-0.00054358	-0.65858	-0.00032751	497.2951347089136	40.962	1.4632	40.962	40.657	42.12	0					101	41	4	0	0	0	0.08613	4	3649	3638;3649;3661;3673		115.46	30.543	1	18712000			32432	8430;8425	22361	22403	37269;37270;37271;37272	37270					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.P103Rfs*5|1|0.33|ENSG00000173914|chr11:66676771-66676772|CG/-|frameshift_variant;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.295166015625	2	497.295633	992.576714	0.32171	0.00015999	-0.92316	-0.00045908	-0.60145	-0.0002991	497.2952154028167	41.157	1.8865	41.033	40.725	42.611	-0.12317					127	53	4	0	0	0	0.13494	5	3680	3644;3655;3667;3680;3694		102.77	39.584	1	17753000			32433	8430;8425	22361	22403	37273;37274;37275;37276;37277	37276					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.P103Rfs*5|1|0.33|ENSG00000173914|chr11:66676771-66676772|CG/-|frameshift_variant;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.29541015625	2	497.295633	992.576714	0.071892	3.5751E-05	-0.71782	-0.00035697	-0.64592	-0.00032122	497.2953104799945	41.177	1.5593	41.2	40.83	42.39	0.023006					105	44	4	0	0	0	0.08613	4	3636	3611;3623;3636;3648		115.46	38.566	1	16423000			32434	8430;8425	22361	22403	37278;37279;37280;37281	37280					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.P103Rfs*5|1|0.33|ENSG00000173914|chr11:66676771-66676772|CG/-|frameshift_variant;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2957458496094	2	497.295633	992.576714	-0.497	-0.00024715	0.22238	0.00011059	-0.27461	-0.00013656	497.29563730684976	41.052	1.2428	40.917	40.597	41.84	-0.13553					62	32	4	0	0	0	0.13494	2	3594	3594;3607		102.77	19.27	1	3379800			32435	8430;8425	22361	22403	37282;37283	37282					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.P103Rfs*5|1|0.33|ENSG00000173914|chr11:66676771-66676772|CG/-|frameshift_variant;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2952880859375	2	497.295633	992.576714	-0.25642	-0.00012752	0.0096898	4.8187E-06	-0.24673	-0.0001227	497.2955075825571	41.253	1.1452	41.025	40.729	41.874	-0.2278					64	29	4	0	0	0	0.096521	3	3610	3610;3623;3637		111.65	30.483	1	3256900			32436	8430;8425	22361	22403	37284;37285;37286	37284					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173914|ENST00000310046|RBM4B;RBM4B|p.P103Rfs*5|1|0.33|ENSG00000173914|chr11:66676771-66676772|CG/-|frameshift_variant;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173914|ENST00000310046|RBM4B;ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.29522705078125	2	497.295633	992.576714	-0.88325	-0.00043923	0.60833	0.00030252	-0.27491	-0.00013671	497.2957779653928	41.295	1.0638	41.065	40.733	41.797	-0.23029					60	27	4	0	0	0	0.049585	3	3624	3613;3624;3637		128.86	45.574	1	3123300			32437	8430;8425	22361	22403	37287;37288;37289	37288					0.0801286891704649
KLHHILEIL	9	Unmodified	_KLHHILEIL_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2654418945312	2	558.350409	1114.68626	-0.44288	-0.00024728	-0.46242	-0.00025819	-0.90529	-0.00050547	558.3499895289771	83.06	0.51552	83.06	82.835	83.351	0					15	11	2	0	0	0	0.024405	1	10367	10367		53.351	0	1	70854			32438	8467	22362	22404	37290	37290					0.13350874536376978
KLHHVDTD	8	Unmodified	_KLHHVDTD_					0	0	0			REV__CUX1|p.A173Cfs*22|1|0.14|ENSG00000257923|chr7:102104442-102104443|-/T|frameshift_variant	REV__CUX1|p.A173Cfs*22|1|0.14|ENSG00000257923|chr7:102104442-102104443|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.64678955078125	2	482.745973	963.477394	0.026413	1.2751E-05	1.3408	0.00064727	1.3672	0.00066002	482.7459450017574	47.097	0.35486	46.828	46.695	47.05	-0.26939					11	9	2	0	0	0	0.027866	1	4554	4554		17.365	0	1	89757	+		32439	19633	22363	22405	37291	37291					-0.005805737677064826
KLHINSLTLMI	11	Unmodified	_KLHINSLTLMI_					0	0	0			REV__ENSG00000205328|ENST00000379665|OR6C65	REV__ENSG00000205328|ENST00000379665|OR6C65	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8829956054688	2	641.881216	1281.74788	0.55581	0.00035677	1.3353	0.00085713	1.8912	0.0012139	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	1.0442	1	12346	12346		26.693	2.1737	1	3344500	+		32440	28672	22364	22406	37292	37292					0.11827438173349947
KLHINSLTLMI	11	Unmodified	_KLHINSLTLMI_					0	0	0			REV__ENSG00000205328|ENST00000379665|OR6C65	REV__ENSG00000205328|ENST00000379665|OR6C65	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8827514648438	2	641.881216	1281.74788	1.496	0.00096027	0.3574	0.00022941	1.8534	0.0011897	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	1.018	1	12114	12114		32.812	0	1	2979200	+		32441	28672	22364	22406	37293	37293					0.11827438173349947
KLHKEKTR	8	Unmodified	_KLHKEKTR_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.N868Ifs*8|1|0.33|ENSG00000167258|chr17:39501432-39501432|A/-|frameshift_variant	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3219604492188	2	520.322183	1038.62981	0.21613	0.00011246	-0.68537	-0.00035662	-0.46924	-0.00024416	520.3217464400306	17.868	0.78823	17.726	17.503	18.291	-0.14278					36	15	4	0	0	0	1.0516	1	205	205		29.15	0	1	1089300			32442	7665	22365	22407	37294	37294					0.11204246699685427
KLHKLKVL	8	Unmodified	_KLHKLKVL_					0	0	0		ENSG00000179542|ENST00000356928|SLITRK4;SLITRK4|p.N323Kfs*49|1|0.87|ENSG00000179542|chrX:143630140-143630141|-/T|frameshift_variant	ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2652282714844	2	489.844762	977.674971	-1.0697	-0.000524	1.8372	0.00089992	0.76742	0.00037592	489.8454184458667	55.957	0.1424	55.742	55.673	55.815	-0.21551					5	3	2	0	0	0	0.027866	1	6027	6027		8.2313	3.915	1	49984			32443	8902	22366	22408	37295	37295					0.18524097232898384
KLHLASAH	8	Unmodified	_KLHLASAH_					0	0	0		ENST00000355680.7_1_21:48084242-48084341:+|nuORF	ENST00000355680.7_1_21:48084242-48084341:+|nuORF	ENST00000355680.7_1_21:48084242-48084341:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.75665283203125	2	438.756144	875.497735	0.24096	0.00010572	-0.046765	-2.0519E-05	0.19419	8.5203E-05	438.75601774874855	41.154	0.84414	41.177	40.899	41.743	0.023006					54	23	3	0	0	0	0.96719	1	3631	3631		42.474	0.078325	1	2956400			32444	12652	22367	22409	37296	37296					0.05500641682749574
KLHLCMCL	8	Unmodified	_KLHLCMCL_					0	0	0		ENST00000464690.5_1_3:120129559-120169830:-|nuORF	ENST00000464690.5_1_3:120129559-120169830:-|nuORF	ENST00000464690.5_1_3:120129559-120169830:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2652893066406	2	480.745019	959.475485	-0.41918	-0.00020152	2.0501	0.00098556	1.6309	0.00078404	480.7451610620719	29.458	1.0338	29.461	28.883	29.916	0.0031357					60	25	3	0	0	0	0.027866	1	1754	1754		37.028	0	1	189720			32445	14768	22368	22410	37297	37297					-0.005873653731782724
KLHLCMCL	8	Unmodified	_KLHLCMCL_					0	0	0		ENST00000464690.5_1_3:120129559-120169830:-|nuORF	ENST00000464690.5_1_3:120129559-120169830:-|nuORF	ENST00000464690.5_1_3:120129559-120169830:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.26385498046875	2	480.745019	959.475485	-0.5913	-0.00028426	3.3403	0.0016058	2.749	0.0013216	480.74500814576413	29.297	0.82071	29.375	28.942	29.763	0.078346					65	20	4	0	0	0	0.027866	1	1681	1681		46.766	0	1	212620			32446	14768	22368	22410	37298	37298					-0.005873653731782724
KLHLFTII	8	Unmodified	_KLHLFTII_					0	0	0		SLC4A10|p.V983L|1|0.24|ENSG00000144290|chr2:161964219-161964219|G/T|missense_variant	SLC4A10|p.V983L|1|0.24|ENSG00000144290|chr2:161964219-161964219|G/T|missense_variant	SLC4A10|p.V983L|1|0.24|ENSG00000144290|chr2:161964219-161964219|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.78521728515625	2	492.81567	983.616788	0.85818	0.00042292	2.3752	0.0011705	3.2334	0.0015935	492.81701924464767	78.228	0.48883	78.036	77.891	78.38	-0.1921					17	11	2	0	0	0	0.027866	1	9675	9675		42.474	0	1	175810			32447	37893	22369	22411	37299	37299					0.12432415587613832
KLHLRPVFPK	10	Unmodified	_KLHLRPVFPK_					0	0	0			REV__ENST00000308982.11_1_3:128631530-128631665:+|nuORF	REV__ENST00000308982.11_1_3:128631530-128631665:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.25537109375	3	412.264276	1233.771	-0.77886	-0.0003211	2.9625	0.0012213	2.1836	0.00090023	412.264736648615	21.01	0.14889	20.797	20.723	20.872	-0.2128					4	2	2	0	0	0	0.03519	1	592	592		6.6596	2.0471	1	3445.8	+		32448	30155	22370	22412	37300	37300					0.16346245072963939
KLHQSLHQ	8	Unmodified	_KLHQSLHQ_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.73797607421875	2	495.777608	989.540663	0.24023	0.0001191	0.079207	3.9269E-05	0.31943	0.00015837	495.77762464531014	36.428	0.42044	36.211	35.947	36.368	-0.21661					19	10	3	0	0	0	0.027866	1	2849	2849		40.778	28.571	1	132130			32449	1339	22371	22413	37301	37301					0.045474117401681724
KLHRAAAA	8	Unmodified	_KLHRAAAA_					0	0	0		ENST00000475773.5_1_1:29520536-29527072:-|nuORF;ENST00000453185.5_1_1:29522511-29533334:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2279052734375	2	419.256311	836.49807	0.38752	0.00016247	-0.011919	-4.997E-06	0.3756	0.00015747	419.2561263558744	25.173	0.74123	25.253	25.05	25.792	0.08009					24	17	2	0	0	0	0.027866	1	1177	1177		28.254	2.8041	1	48607			32450	14543	22372	22414	37302	37302					0.07328061402586172
KLHRVGEN	8	Unmodified	_KLHRVGEN_					0	0	0			REV__ENSG00000104866|ENST00000221462|PPP1R37	REV__ENSG00000104866|ENST00000221462|PPP1R37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2972717285156	2	476.769783	951.525013	-0.92037	-0.0004388	0.78994	0.00037662	-0.13043	-6.2183E-05	476.7703361798358	40.315	0.38185	40.085	39.891	40.273	-0.23021					16	9	2	0	0	0	0.027866	1	3438	3438		12.959	1.4482	1	162370	+		32451	21474	22373	22415	37303	37303					0.047311252231338585
KLHRVLEF	8	Unmodified	_KLHRVLEF_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7427368164062	2	521.313826	1040.6131	-0.77041	-0.00040163	1.853	0.000966	1.0826	0.00056438	521.3137502579751	44.153	0.37337	43.909	43.672	44.045	-0.2444					19	9	3	0	0	0	0.027866	1	4051	4051		23.042	0	1	270960	+		32452	23649	22374	22416	37304	37304					0.09441745813751368
KLHSALVI	8	Unmodified	_KLHSALVI_					0	0	0			REV__ENSG00000167131|ENST00000417826|CCDC103	REV__ENSG00000167131|ENST00000417826|CCDC103	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.24346923828125	2	440.78437	879.554188	-0.8718	-0.00038428	1.1678	0.00051473	0.29597	0.00013046	440.7847030079336	25.558	0.37112	25.331	25.105	25.476	-0.22683					14	8	2	0	0	0	0.027866	1	1205	1205		47.916	7.343	1	143990	+		32453	26111	22375	22417	37305	37305					0.10959269519412373
KLHSALVI	8	Unmodified	_KLHSALVI_					0	0	0			REV__ENSG00000167131|ENST00000417826|CCDC103	REV__ENSG00000167131|ENST00000417826|CCDC103	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	440.78437	879.554188	-0.27492	-0.00012118	-0.25866	-0.00011401	-0.53358	-0.00023519	440.7843456264131	25.208	0.46344	25.037	24.825	25.288	-0.17078	-0.13199	-0.00099295	NaN	47.916	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121040	+		32454	26111	22375	22417							0.10959269519412373
KLHSDLLTL	9	Unmodified	_KLHSDLLTL_					0	0	0			REV__ENSG00000185821|ENST00000328314|OR6C76	REV__ENSG00000185821|ENST00000328314|OR6C76	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.26904296875	2	520.310949	1038.60735	-0.55145	-0.00028693	0.13409	6.9769E-05	-0.41736	-0.00021716	520.3109647526993	75.647	0.72735	75.402	74.997	75.724	-0.24455					43	19	3	0	0	0	0.022756	1	9193	9193		90.777	0.40684	1	1067900	+		32455	27800	22376	22418	37306	37306					0.08958602511415847
KLHSDLLTL	9	Unmodified	_KLHSDLLTL_					0	0	0			REV__ENSG00000185821|ENST00000328314|OR6C76	REV__ENSG00000185821|ENST00000328314|OR6C76	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2691040039062	2	520.310949	1038.60735	-0.020639	-1.0739E-05	-0.32327	-0.0001682	-0.34391	-0.00017894	520.3107412404497	75.401	0.6588	75.411	75.092	75.751	0.010376					42	17	3	0	0	0	0.022756	1	9133	9133		90.777	0	1	1052400	+		32456	27800	22376	22418	37307	37307					0.08958602511415847
KLHSNEEKITF	11	Unmodified	_KLHSNEEKITF_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.22393798828125	3	449.241865	1344.70376	-0.31934	-0.00014346	-1.4998	-0.00067379	-1.8192	-0.00081725	449.24108440329513	23.392	0.3355	23.468	23.312	23.647	0.076239					13	7	2	0	0	0	0.024735	1	889	889		27.644	6.8068	1	73382	+		32457	27409	22377	22419	37308	37308					0.045201252806919
KLHSRTSEG	9	Unmodified	_KLHSRTSEG_					0	0	0		ENST00000559512.5_1_14:102691916-102691958:-|nuORF	ENST00000559512.5_1_14:102691916-102691958:-|nuORF	ENST00000559512.5_1_14:102691916-102691958:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7360534667969	2	507.76998	1013.52541	-0.55502	-0.00028182	3.6945	0.0018759	3.1394	0.0015941	508.27456505736683	40.005	0.1877	39.774	39.623	39.811	-0.23021					6	4	2	0	0	0	0.018452	1	3412	3412		87.696	32.192	1	46580			32458	16782	22378	22420	37309	37309					0.019185001523283063
KLHVPHQLLQ	10	Unmodified	_KLHVPHQLLQ_					0	0	0			REV__ENST00000507642.5_1_5:40832592-40834660:-|nuORF	REV__ENST00000507642.5_1_5:40832592-40834660:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	606.83203125	2	606.864215	1211.71388	-1.6857	-0.001023	-1.2122	-0.00073562	-2.8979	-0.0017586	606.8627616491934	54.596	0.1969	54.596	54.492	54.689	0					8	5	2	0	0	0	0.03519	1	5972	5972		40.778	18.818	1	114050	+		32459	34049	22379	22421	37310	37310					0.11648777796608556
KLHWLFELL	9	Unmodified	_KLHWLFELL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.88775634765625	3	400.237615	1197.69102	0.62485	0.00025009	1.9096	0.00076428	2.5344	0.0010144	400.2380352000132	22.917	0.37093	22.726	22.526	22.897	-0.19117					15	7	3	0	0	0	0.024517	1	828	828		19.997	1.7347	1	73174			32460	1392	22380	22422	37311	37311					0.10007758679148537
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.3106079101562	2	544.310949	1086.60735	-0.90556	-0.0004929	0.29442	0.00016026	-0.61113	-0.00033265	544.3110878111708	43.022	1.3378	43.022	42.534	43.872	0					113	36	6	0	0	0	0.014988	3	3995	3995;4004;4016		161.9	41.277	1	6524600			32461	9860	22381	22423	37312;37313;37314	37312					0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.3107299804688	2	544.310949	1086.60735	-0.95786	-0.00052137	0.44615	0.00024284	-0.51171	-0.00027853	544.3111289627877	43.217	1.2216	43.078	42.631	43.853	-0.13929					106	33	5	0	0	0	0.016871	3	4005	4005;4016;4029		152.47	35.567	1	6551800			32462	9860	22381	22423	37315;37316;37317	37315					0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.3109130859375	2	544.310949	1086.60735	-0.33693	-0.00018339	-0.36563	-0.00019902	-0.70256	-0.00038241	544.3107165281687	43.137	1.1577	43.168	42.795	43.953	0.030827					104	31	6	0	0	0	0.016871	2	3955	3955;3967		152.47	56.28	1	6242300			32463	9860	22381	22423	37318;37319	37318					0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.310949	1086.60735	-0.3876	-0.00021098	-0.27308	-0.00014864	-0.66068	-0.00035962	544.3104577028364	43.091	0.39661	42.979	42.891	43.288	-0.11253	-0.088246	-0.00036594	NaN	161.9	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179660			32464	9860	22381	22423							0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.310949	1086.60735	-0.62816	-0.00034191	-0.28012	-0.00015247	-0.90828	-0.00049438	544.3106469357941	43.299	0.43764	43.062	42.879	43.317	-0.23736	-0.0049005	-0.00037359	NaN	161.9	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199340			32465	9860	22381	22423							0.06750602511442594
KLHYVVTEV	9	Unmodified	_KLHYVVTEV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.310949	1086.60735	-1.3689	-0.00074509	0.69715	0.00037947	-0.67172	-0.00036563	544.3109208869009	43.319	0.47062	43.093	42.873	43.344	-0.22597	0.02587	0.00069028	NaN	161.9	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139890			32466	9860	22381	22423							0.06750602511442594
KLIAGAPRAL	10	Unmodified	_KLIAGAPRAL_					0	0	0			REV__ENST00000380737.7_1_8:26149008-26149152:+|nuORF	REV__ENST00000380737.7_1_8:26149008-26149152:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.265380859375	2	505.329476	1008.6444	-0.57015	-0.00028812	0.09483	4.7921E-05	-0.47532	-0.0002402	505.3295253021083	63.124	0.40595	62.884	62.654	63.06	-0.23926					18	9	3	0	0	0	0.03519	1	7308	7308		14.137	8.216	1	237820	+		32467	31494	22382	22424	37320	37320					0.14042318847839397
KLIALIWPS	9	Unmodified	_KLIALIWPS_					0	0	0		nc|ENSG00000090686|Q86UV5-8|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.809814453125	2	520.828778	1039.643	-0.73467	-0.00038263	3.4963	0.0018209	2.7616	0.0014383	520.830485801324	53.611	0.63781	53.706	53.3	53.938	0.095669					23	17	2	0	0	0	0.024405	1	5734	5734		20.947	0	1	154490			32468	18108	22383	22425	37321	37321					0.12476684759076306
KLIAQNLEL	9	Unmodified	_KLIAQNLEL_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.318359375	2	521.318774	1040.623	-0.022624	-1.1794E-05	-0.68726	-0.00035828	-0.70989	-0.00037008	521.3183377873627	60.051	0.72767	60.051	59.745	60.473	0					64	19	4	0	0	0	0.2508	1	6896	6896		82.241	12.613	1	3638700			32469	5213	22384	22426	37322	37322					0.10430889028452839
KLIAQNLEL	9	Unmodified	_KLIAQNLEL_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.318115234375	2	521.318774	1040.623	-0.56172	-0.00029283	-0.17311	-9.0245E-05	-0.73483	-0.00038308	521.318620565607	60.274	0.7828	60.073	59.761	60.543	-0.20057					60	20	4	0	0	0	0.17845	2	6882	6882;6894		93.143	15.811	1	2649600			32470	5213	22384	22426	37323;37324	37323					0.10430889028452839
KLIAQNLEL	9	Unmodified	_KLIAQNLEL_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.3178100585938	2	521.318774	1040.623	-1.3063	-0.00068101	0.68047	0.00035474	-0.62585	-0.00032627	521.3190147506713	59.952	0.96226	60.031	59.685	60.647	0.078888					73	25	4	0	0	0	0.17822	2	6785	6785;6798		93.195	23.568	1	3029600			32471	5213	22384	22426	37325;37326	37325					0.10430889028452839
KLIARPKSN	9	Unmodified	_KLIARPKSN_					0	0	0			REV__nc|ENSG00000156475|Q00005-7|PPP2R2B	REV__nc|ENSG00000156475|Q00005-7|PPP2R2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8247680664062	2	513.824558	1025.63456	-1.1869	-0.00060988	0.74861	0.00038465	-0.43833	-0.00022522	513.825017437267	39.844	1.2054	39.868	39.526	40.731	0.023727					88	33	5	0	0	0	0.89441	1	3419	3419		32.812	6.0163	1	11651000	+		32472	36807	22385	22427	37327	37327					0.12277130842471706
KLIDDEDFDQK	11	Unmodified	_KLIDDEDFDQK_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.88800048828125	3	455.889268	1364.64598	-0.61693	-0.00028125	-3.1703	-0.0014453	-3.7872	-0.0017265	455.8881236245089	37.8	2.3011	37.832	37.413	39.714	0.032269					183	63	6	0	0	0	0.81748	1	3077	3077		56.632	3.0354	1	25561000	+		32473	25192	22386	22428	37328	37328					-0.02176181435379476
KLIDGQVIQL	10	Unmodified	_KLIDGQVIQL_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8447875976562	2	563.845156	1125.67576	0.35578	0.00020061	-0.88601	-0.00049957	-0.53022	-0.00029896	563.8445626876354	65.767	0.6505	65.767	65.494	66.145	0					52	16	4	0	0	0	0.18296	2	7814	7814;7825		123.21	23.933	1	2110800			32474	7570	22387	22429	37329;37330	37329					0.11794847091277916
KLIDGQVIQL	10	Unmodified	_KLIDGQVIQL_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.8450317382812	2	563.845156	1125.67576	-0.56406	-0.00031804	0.20137	0.00011354	-0.3627	-0.0002045	563.8451409848993	65.837	0.64977	65.867	65.587	66.237	0.030106					52	16	5	0	0	0	0.024725	2	7747	7735;7747		159.28	31.814	1	2299800			32475	7570	22387	22429	37331;37332	37332					0.11794847091277916
KLIDGQVIQL	10	Unmodified	_KLIDGQVIQL_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	563.845156	1125.67576	-0.23667	-0.00013345	-0.32769	-0.00018477	-0.56436	-0.00031821	563.8449194691933	66.153	0.59441	65.912	65.706	66.301	-0.24144	0.061783	1.2328E-05	NaN	159.28	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	533240			32476	7570	22387	22429							0.11794847091277916
KLIDGQVIQL	10	Unmodified	_KLIDGQVIQL_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.845156	1125.67576	-0.63285	-0.00035683	-0.098724	-5.5665E-05	-0.73158	-0.0004125	563.8450529381139	66.086	0.52666	65.872	65.629	66.156	-0.21327	0.022306	0.00027053	NaN	159.28	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492110			32477	7570	22387	22429							0.11794847091277916
KLIDGQVIQL	10	Unmodified	_KLIDGQVIQL_					0	0	0		nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	nc|ENSG00000166478|P52747-2|ZNF143	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	563.845156	1125.67576	-0.55264	-0.0003116	-0.011967	-6.7478E-06	-0.56461	-0.00031835	563.8451047468626	66.078	0.47691	65.827	65.644	66.121	-0.25112	-0.022998	0.00036836	NaN	159.28	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701870			32478	7570	22387	22429							0.11794847091277916
KLIDNINNL	9	Unmodified	_KLIDNINNL_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3447265625	2	528.806031	1055.59751	-0.92167	-0.00048738	0.60212	0.00031841	-0.31955	-0.00016898	528.8063510162544	54.162	0.82147	54.162	53.835	54.656	0					61	23	4	0	0	0	0.022411	1	5936	5936		113.41	36.094	1	5689400	+		32479	25831	22388	22430	37333	37333					0.07193414506036788
KLIDNINNL	9	Unmodified	_KLIDNINNL_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8058471679688	2	528.806031	1055.59751	0.24805	0.00013117	-0.60591	-0.00032041	-0.35786	-0.00018924	528.8056695054519	53.932	0.78638	54.03	53.739	54.525	0.098015					58	22	4	0	0	0	0.37611	1	5800	5800		67.494	16.158	1	5026600	+		32480	25831	22388	22430	37334	37334					0.07193414506036788
KLIDVTNIYW	10	Unmodified	_KLIDVTNIYW_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	632.8504028320312	2	632.850438	1263.68632	-0.43736	-0.00027678	0.15627	9.8897E-05	-0.28109	-0.00017789	632.8505319542478	79.006	1.2607	78.752	78.427	79.688	-0.25471					72	29	5	0	0	0	0.0068679	3	9428	9418;9428;9440		174.86	104.05	1	3755700			32481	4356	22389	22431	37335;37336;37337	37336					0.0650282974570473
KLIDVTNIYW	10	Unmodified	_KLIDVTNIYW_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	632.8502197265625	2	632.850438	1263.68632	-0.23704	-0.00015001	-0.030372	-1.9221E-05	-0.26741	-0.00016923	632.8504740387433	78.979	1.0487	78.748	78.433	79.481	-0.23141					81	24	5	0	0	0	0.3202	4	9448	9425;9437;9448;9463		106.88	60.423	1	3185500			32482	4356	22389	22431	37338;37339;37340;37341	37340					0.0650282974570473
KLIDVTNIYW	10	Unmodified	_KLIDVTNIYW_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	632.8508911132812	2	632.850438	1263.68632	-0.10286	-6.5093E-05	-0.2466	-0.00015606	-0.34946	-0.00022116	632.8503061698028	78.864	1.4346	78.708	78.383	79.818	-0.15591					89	33	5	0	0	0	0.047364	4	9420	9397;9408;9420;9436		148.69	68.236	1	3558700			32483	4356	22389	22431	37342;37343;37344;37345	37344					0.0650282974570473
KLIEEEYL	8	Unmodified	_KLIEEEYL_					0	0	0			REV__nc|ENSG00000130226|P42658-2|DPP6	REV__nc|ENSG00000130226|P42658-2|DPP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.357666015625	2	518.78169	1035.54883	-0.40201	-0.00020856	0.25282	0.00013116	-0.1492	-7.7401E-05	518.7816648557612	82.544	1.3401	82.404	81.87	83.21	-0.14014					49	30	2	0	0	0	0.027866	1	9898	9898		21.96	0	1	286130	+		32484	23093	22390	22432	37346	37346					0.03247501146279319
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-11|CREM;ENST00000374721.7_1_10:35500449-35500728:+|nuORF	nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-1|CREM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3160400390625	2	544.315897	1086.61724	-0.049852	-2.7135E-05	0.56986	0.00031018	0.52001	0.00028305	544.3161908190251	67.848	0.73543	67.615	67.345	68.081	-0.23376					39	17	3	0	0	0	0.30449	1	7830	7830		75.043	19.539	1	828230			32485	18117	22391	22433	37347	37347					0.07739745726144065
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-11|CREM;ENST00000374721.7_1_10:35500449-35500728:+|nuORF	nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-1|CREM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	544.315897	1086.61724	-0.43505	-0.0002368	1.3237	0.00072051	0.88865	0.0004837	544.3164638160107	67.467	1.0092	67.467	67.285	68.295	0	-0.11852	0.00075929	NaN	75.043	42	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1072800			32486	18117	22391	22433							0.07739745726144065
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-11|CREM;ENST00000374721.7_1_10:35500449-35500728:+|nuORF	nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-1|CREM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.315897	1086.61724	-0.54136	-0.00029467	1.0903	0.00059345	0.54891	0.00029878	544.3163276515554	67.86	1.0215	67.572	67.388	68.409	-0.28834	-0.014415	0.00050517	NaN	75.043	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1142600			32487	18117	22391	22433							0.07739745726144065
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-11|CREM;ENST00000374721.7_1_10:35500449-35500728:+|nuORF	nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-1|CREM	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.315897	1086.61724	-0.46221	-0.00025159	0.73792	0.00040166	0.27571	0.00015008	544.3162900196295	67.591	0.96099	67.615	67.471	68.432	0.023911	0.029339	0.00012161	NaN	75.043	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	896530			32488	18117	22391	22433							0.07739745726144065
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-11|CREM;ENST00000374721.7_1_10:35500449-35500728:+|nuORF	nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-1|CREM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.315897	1086.61724	0.56893	0.00030968	-0.12046	-6.5569E-05	0.44847	0.00024411	544.3158654453932	67.932	0.82071	67.676	67.367	68.188	-0.25516	0.09044	-0.00081286	NaN	75.043	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866860			32489	18117	22391	22433							0.07739745726144065
KLIEELETL	9	Unmodified	_KLIEELETL_					0	0	0		nc|ENSG00000095794|Q03060-1|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-11|CREM;ENST00000374721.7_1_10:35500449-35500728:+|nuORF	nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-1|CREM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.315897	1086.61724	-0.54289	-0.0002955	0.85307	0.00046434	0.31018	0.00016884	544.3164142606447	67.809	0.97446	67.57	67.334	68.308	-0.23814	-0.01556	0.00024696	NaN	75.043	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081800			32490	18117	22391	22433							0.07739745726144065
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MSMS	OPSCC_39_ClassI_Rep-1	1	584.3428955078125	2	584.342249	1166.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.608	1	52.608	52.108	53.108	0								0	0	0	0.016409	1	5645	5645		136.27	45.898	1				32491	1862	22392	22434	37348	37348					0.09327748579607942
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.3424072265625	2	584.342249	1166.66995	-0.78845	-0.00046072	1.1448	0.00066898	0.35639	0.00020825	584.3427089150681	52.746	0.95159	52.599	52.287	53.239	-0.14723					45	24	4	0	0	0	0.094442	1	5639	5639		112.41	30.17	1	999190			32492	1862	22392	22434	37349	37349					0.09327748579607942
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.3416137695312	2	584.342249	1166.66995	0.50717	0.00029636	-0.62121	-0.000363	-0.11404	-6.6636E-05	584.3416348931947	52.497	1.0868	52.589	52.28	53.367	0.091942					50	28	4	0	0	0	0.1158	2	5551	5551;5563		107.01	13.812	1	1679700			32493	1862	22392	22434	37350;37351	37350					0.09327748579607942
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	584.342249	1166.66995	-0.72602	-0.00042425	-0.46936	-0.00027427	-1.1954	-0.00069851	584.3416146217689	52.521	0.59238	52.397	52.043	52.635	-0.12339	-0.11853	-0.00063822	NaN	112.41	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200860			32494	1862	22392	22434							0.09327748579607942
KLIEKNYFL	9	Unmodified	_KLIEKNYFL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	584.342249	1166.66995	-0.66906	-0.00039096	-0.3621	-0.00021159	-1.0312	-0.00060255	584.3416953125767	52.737	0.59025	52.478	52.173	52.763	-0.25838	-0.03769	-0.00051286	NaN	112.41	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201140			32495	1862	22392	22434							0.09327748579607942
KLIEKVEVV	9	Unmodified	_KLIEKVEVV_					0	0	0			REV__ENSG00000162998|ENST00000295113|FRZB	REV__ENSG00000162998|ENST00000295113|FRZB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2972412109375	2	528.8368	1055.65905	-0.83913	-0.00044376	0.70987	0.00037541	-0.12925	-6.8353E-05	528.837255805181	56.457	0.43625	56.293	56.023	56.459	-0.16431					17	11	2	0	0	0	0.024367	1	6227	6227		44.377	10.456	1	134830	+		32496	25518	22393	22435	37352	37352					0.13344346205326474
KLIEPGLCWYS	11	Unmodified	_KLIEPGLCWYS_					0	0	0			REV__ENST00000600027.5_1_19:49999677-50000944:+|nuORF	REV__ENST00000600027.5_1_19:49999677-50000944:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.8815002441406	3	436.893408	1307.65839	-0.73812	-0.00032248	0.1545	6.7501E-05	-0.58362	-0.00025498	436.8924592320002	39.459	0.38416	39.36	39.163	39.547	-0.098755					22	10	3	0	0	0	0.024339	1	3403	3403		70.399	3.4784	1	356440	+		32497	35836	22394	22436	37353	37353					0.0168718349395931
KLIERADKLK	10	Unmodified	_KLIERADKLK_					0	0	0			REV__nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	REV__nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	405.259079	1212.75541	0.81308	0.00032951	3.6107	0.0014633	4.4238	0.0017928	405.2607770512622	27.014	0.28864	27.095	26.883	27.171	0.081291					12	7	2	0	0	0	0.03519	1	1364	1364		32.751	5.7032	1	50627	+		32498	21222	22395	22437	37354	37354					0.15753913765252037
KLIERFLSRF	10	Unmodified	_KLIERFLSRF_					0	0	0			REV__ENST00000605357.5_1_7:20368312-20368429:-|nuORF	REV__ENST00000605357.5_1_7:20368312-20368429:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8810729980469	3	436.931073	1307.77139	0.34001	0.00014856	1.4111	0.00061655	1.7511	0.00076512	436.9321293310537	39.757	0.30843	39.527	39.352	39.66	-0.23021					18	7	3	0	0	0	0.03519	1	3351	3351		61.765	20.684	1	212620	+		32499	35917	22396	22438	37355	37355					0.12981620002165073
KLIEYYKNG	9	Unmodified	_KLIEYYKNG_					0	0	0		nc|ENSG00000113552|P46926-2|GNPDA1;ENSG00000113552|ENST00000311337|GNPDA1	nc|ENSG00000113552|P46926-2|GNPDA1	nc|ENSG00000113552|P46926-2|GNPDA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2889404296875	2	564.308406	1126.60226	-0.58429	-0.00032972	0.50869	0.00028706	-0.0756	-4.2662E-05	564.3086925131844	66.651	0.52977	66.651	66.519	67.049	0					20	12	3	0	0	0	0.024397	1	7979	7979		39.253	13.679	1	451210			32500	3301	22397	22439	37356	37356					0.04402298648778924
KLIFAKIQD	9	Unmodified	_KLIFAKIQD_					0	0	0		nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3268432617188	2	538.329142	1074.64373	0.47679	0.00025667	-4.3339	-0.002333	-3.8571	-0.0020764	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	0.96906	1	12412	12412		26.693	1.1189	1	21461000			32501	9962	22398	22440	37357	37357					0.10939479408125408
KLIGAYLPQP	10	Unmodified	_KLIGAYLPQP_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2891845703125	2	550.329142	1098.64373	-0.99309	-0.00054653	-3.1621	-0.0017402	-4.1552	-0.0022867	550.3272441503713	48.534	0.48161	48.381	48.023	48.505	-0.15277					38	13	4	0	0	0	0.03519	1	4895	4895		39.253	4.1008	1	1221100			32502	641	22399	22441	37358	37358					0.09835479408138781
KLIGKMHL	8	Unmodified	_KLIGKMHL_					0	0	0			REV__ENSG00000148488|ENST00000377602|ST8SIA6	REV__ENSG00000148488|ENST00000377602|ST8SIA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2956237792969	2	470.294048	938.573543	4.0872	0.0019222	-0.60054	-0.00028243	3.4866	0.0016397	470.29387853859765	18.737	1.81	18.8	18.55	20.36	0.063307					78	36	4	0	0	0	1.0574	1	343	343		26.796	0	1	3904300	+		32503	24622	22400	22442	37359	37359					0.1017990253866401
KLIGPMLDMN	10	Unmodified	_KLIGPMLDMN_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.835205078125	2	566.29867	1130.58279	-0.38141	-0.00021599	-0.12934	-7.3246E-05	-0.51075	-0.00028924	566.2988762257327	22.161	0.23604	21.976	21.858	22.094	-0.18539					9	4	3	0	0	0	0.03519	1	751	751		41.427	3.6151	1	25544	+		32504	26475	22401	22443	37360	37360					0.022718830420444647
KLIGPNNL	8	Unmodified	_KLIGPNNL_					0	0	0		ENST00000320474.8_1_3:160803222-160803321:-|nuORF	ENST00000320474.8_1_3:160803222-160803321:-|nuORF	ENST00000320474.8_1_3:160803222-160803321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7655334472656	2	434.766178	867.517802	0.057252	2.4891E-05	0.61985	0.00026949	0.6771	0.00029438	434.76642591463957	54.813	1.1455	54.813	54.428	55.573	0					81	32	4	0	0	0	0.6248	1	6047	6047		73.975	10.668	1	7385000			32505	12193	22402	22444	37361	37361					0.07874392622716186
KLIGPNNL	8	Unmodified	_KLIGPNNL_					0	0	0		ENST00000320474.8_1_3:160803222-160803321:-|nuORF	ENST00000320474.8_1_3:160803222-160803321:-|nuORF	ENST00000320474.8_1_3:160803222-160803321:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.27410888671875	2	434.766178	867.517802	0.01496	6.504E-06	0.82847	0.00036019	0.84343	0.0003667	434.7664246439628	54.925	0.61061	54.694	54.387	54.997	-0.23087					40	16	3	0	0	0	0.027866	1	5826	5826		30.504	1.3541	1	1357400			32506	12193	22402	22444	37362	37362					0.07874392622716186
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.8036193847656	2	511.803291	1021.59203	-0.89224	-0.00045665	0.63596	0.00032549	-0.25628	-0.00013117	511.8034800349931	35.229	0.90555	35.229	34.981	35.886	0					57	23	3	0	0	0	0.053401	1	2691	2691		127.46	47.749	1	2874200			32507	1519	22403	22445	37363	37363					0.08209735714228827
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.8035583496094	2	511.803291	1021.59203	-1.0096	-0.00051673	0.78377	0.00040114	-0.22585	-0.00011559	511.8035501644242	35.053	0.95666	35.031	34.79	35.747	-0.021763					55	24	3	0	0	0	0.014034	1	2651	2651		166.68	78.982	1	3010300			32508	1519	22403	22445	37364	37364					0.08209735714228827
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.8036193847656	2	511.803291	1021.59203	-0.7128	-0.00036482	0.42654	0.0002183	-0.28626	-0.00014651	511.80336106391394	35.097	0.99369	35.141	34.904	35.898	0.04406					62	25	3	0	0	0	0.041068	2	2624	2624;2636		132.76	45.061	1	2560300			32509	1519	22403	22445	37365;37366	37365					0.08209735714228827
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.803291	1021.59203	-0.11604	-5.9389E-05	0.31092	0.00015913	0.19488	9.9739E-05	511.80336379762804	35.191	0.54317	34.975	34.753	35.296	-0.21556	-0.073857	-0.00028686	NaN	166.68	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260720			32510	1519	22403	22445							0.08209735714228827
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.803291	1021.59203	-0.55356	-0.00028332	4.3124	0.0022071	3.7589	0.0019238	511.8037226455577	35.21	0.54801	34.997	34.766	35.314	-0.21246	-0.051816	0.0038091	NaN	166.68	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287110			32511	1519	22403	22445							0.08209735714228827
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.803291	1021.59203	-0.53852	-0.00027562	0.69085	0.00035358	0.15233	7.7964E-05	511.80359124276083	35.109	0.77819	34.922	34.402	35.18	-0.18675	-0.12721	0.00010205	NaN	166.68	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255220			32512	1519	22403	22445							0.08209735714228827
KLIKDGLII	9	Unmodified	_KLIKDGLII_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF;ENST00000577741.1_1_17:37358445-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8385314941406	2	506.841885	1011.66922	-0.24058	-0.00012194	-0.050654	-2.5674E-05	-0.29123	-0.00014761	506.84171502719863	54.872	1.7113	54.872	54.428	56.139	0					99	48	4	0	0	0	0.062622	2	6033	6033;6046		124.08	17.073	1	3649200			32513	2886	22404	22446	37367;37368	37367					0.16384953930560187
KLIKDGLII	9	Unmodified	_KLIKDGLII_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF;ENST00000577741.1_1_17:37358445-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.83978271484375	2	506.841885	1011.66922	-0.26258	-0.00013309	0.079581	4.0335E-05	-0.183	-9.2754E-05	506.8417927440307	54.981	1.0526	54.83	54.507	55.56	-0.15036					84	29	4	0	0	0	0.086035	1	6029	6029		115.49	11.437	1	3416100			32514	2886	22404	22446	37369	37369					0.16384953930560187
KLIKIVGPL	9	Unmodified	_KLIKIVGPL_					0	0	0			REV__ENST00000508596.5_1_4:177058709-177061097:+|nuORF	REV__ENST00000508596.5_1_4:177058709-177061097:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2953796386719	2	490.846971	979.679388	-0.19848	-9.7425E-05	-1.2673	-0.00062203	-1.4657	-0.00071945	490.8468695675142	56.766	0.40077	56.766	56.535	56.936	0					18	11	2	0	0	0	0.024412	1	6350	6350		40.573	1.7665	1	142570	+		32515	34069	22405	22447	37370	37370					0.18873561655811955
KLIKNQLGL	9	Unmodified	_KLIKNQLGL_					0	0	0		ZNF347|p.S187T|1|0.09|ENSG00000197937|chr19:53142268-53142268|C/G|missense_variant	ZNF347|p.S187T|1|0.09|ENSG00000197937|chr19:53142268-53142268|C/G|missense_variant	ZNF347|p.S187T|1|0.09|ENSG00000197937|chr19:53142268-53142268|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.802001953125	2	513.837134	1025.65972	-1.6457	-0.00084561	0.71774	0.0003688	-0.92794	-0.00047681	513.837333796693	60.005	1.6066	60.084	59.756	61.363	0.078888					104	42	4	0	0	0	0.024292	1	6766	6766		49.442	1.7842	1	3311900			32516	38186	22406	22448	37371	37371					0.14791185645026417
KLIKRFGTF	9	Unmodified	_KLIKRFGTF_					0	0	0			REV__ENSG00000143324|ENST00000367590|XPR1	REV__ENSG00000143324|ENST00000367590|XPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2263793945312	2	555.345126	1108.6757	0.097141	5.3947E-05	-0.82941	-0.00046061	-0.73227	-0.00040666	555.8460636762532	80.428	0.20528	80.19	80.082	80.287	-0.23784					8	4	3	0	0	0	0.024506	1	9641	9641		16.473	0	1	35271	+		32517	24226	22407	22449	37372	37372					0.12570891881932766
KLIKSNPTACV	11	Unmodified	_KLIKSNPTACV_					0	0	0			REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000090889|ENST00000374403|KIF4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	587.2957153320312	2	587.336641	1172.65873	0.30333	0.00017816	-0.12846	-7.5448E-05	0.17487	0.00010271	587.3364166537042	73.918	0.17177	73.927	73.837	74.009	0.0096512					5	3	2	0	0	0	0.024762	1	8963	8963		12.812	0	1	103310	+		32518	20888	22408	22450	37373	37373					0.07930603213821996
KLILLITQV	9	Unmodified	_KLILLITQV_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.8573608398438	2	520.857535	1039.70052	-1.0573	-0.00055069	0.57019	0.00029699	-0.48708	-0.0002537	520.8576613592626	75.878	1.1328	75.878	75.586	76.719	0					84	28	4	0	0	0	0.28047	1	9337	9337		78.264	0.9462	1	3333000			32519	7149	22409	22451	37374	37374					0.18225526964647543
KLILLITQV	9	Unmodified	_KLILLITQV_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.8570556640625	2	520.857535	1039.70052	0.073614	3.8343E-05	-0.61476	-0.0003202	-0.54115	-0.00028186	520.8570645982169	75.927	1.0941	75.939	75.681	76.775	0.011642					86	27	4	0	0	0	0.28047	1	9283	9283		78.264	0.9462	1	3163200			32520	7149	22409	22451	37375	37375					0.18225526964647543
KLILLVVIV	9	Unmodified	_KLILLVVIV_					0	0	0		ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	ENSG00000168329|ENST00000399220|CX3CR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3239440917969	2	505.372821	1008.73109	0.12076	6.1028E-05	-1.1495	-0.00058091	-1.0287	-0.00051988	505.37233836102035	79.113	0.32907	78.882	78.694	79.023	-0.23141					14	7	2	0	0	0	0.024541	1	9471	9471		11.511	0	1	134460			32521	7811	22410	22452	37376	37376					0.2270730534970653
KLIMTRNC	8	Unmodified	_KLIMTRNC_					0	0	0		ENST00000459803.5_1_3:75472125-75472206:-|nuORF;ENST00000528685.1_1_11:71507309-71510690:+|nuORF;nc|ENSG00000158483|Q9NVL1-2|FAM86C1P;nc|ENSG00000158483|Q9NVL1-3|FAM86C1P;nc|ENSG00000158483|Q9NVL1|FAM86C1P	ENST00000459803.5_1_3:75472125-75472206:-|nuORF	ENST00000459803.5_1_3:75472125-75472206:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7452392578125	2	489.764797	977.515042	-0.24111	-0.00011809	1.7064	0.00083572	1.4653	0.00071763	489.7653064087806	42.79	0.21999	42.552	42.38	42.6	-0.23736					9	5	2	0	0	0	0.027866	1	3855	3855		24.203	7.7296	1	160140			32522	14637	22411	22453	37377	37377					0.025384779018850168
KLIMWALSD	9	Unmodified	_KLIMWALSD_					0	0	0		ENSG00000183067|ENST00000380588|IGSF5	ENSG00000183067|ENST00000380588|IGSF5	ENSG00000183067|ENST00000380588|IGSF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.3047485351562	2	538.794078	1075.5736	-0.14464	-7.7931E-05	-3.8766	-0.0020887	-4.0212	-0.0021666	539.2946697290995	86.268	0.48177	86.081	85.772	86.254	-0.18695					13	10	2	0	0	0	0.024457	1	10439	10439		15.642	0	1	61795			32523	9195	22412	22454	37378	37378					0.03883857747996444
KLINDTGND	9	Unmodified	_KLINDTGND_					0	0	0		ZNF75D|p.K279I|1|0.5|ENSG00000186376|chrX:135287834-135287834|T/A|missense_variant	ZNF75D|p.K279I|1|0.5|ENSG00000186376|chrX:135287834-135287834|T/A|missense_variant	ZNF75D|p.K279I|1|0.5|ENSG00000186376|chrX:135287834-135287834|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2601318359375	2	495.248546	988.482539	-0.60097	-0.00029763	-1.6256	-0.00080508	-2.2266	-0.0011027	495.2477703151274	83.053	0.51144	83.079	82.831	83.342	0.026558					19	11	2	0	0	0	0.024447	1	10310	10310		32.812	22.547	1	249920			32524	38208	22413	22455	37379	37379					-0.012163146957732351
KLINIASSGY	10	Unmodified	_KLINIASSGY_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7737426757812	2	533.300581	1064.58661	0.45966	0.00024514	-0.73144	-0.00039008	-0.27178	-0.00014494	533.300157162447	51.032	0.37676	50.851	50.685	51.062	-0.18071					16	9	2	0	0	0	0.03519	1	5209	5209		25.574	0	1	293270	+		32525	26149	22414	22456	37380	37380					0.056900121317767116
KLINRSIH	8	Unmodified	_KLINRSIH_					0	0	0			REV__ENST00000216268.5_1_22:50276984-50277221:+|nuORF	REV__ENST00000216268.5_1_22:50276984-50277221:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.803466796875	2	490.803626	979.592698	-0.69619	-0.00034169	0.21433	0.00010519	-0.48186	-0.0002365	490.8037124440314	35.574	0.96212	35.574	35.2	36.162	0					102	25	5	0	0	0	1.0239	1	2760	2760		33.516	0	1	4851900	+		32526	29312	22415	22457	37381	37381					0.10208575153933452
KLIPFEIT	8	Unmodified	_KLIPFEIT_					0	0	0			REV__nc|ENSG00000163964|Q8TBF5-2|PIGX	REV__nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.8002014160156	2	480.791861	959.569169	-0.68929	-0.00033141	-2.9288	-0.0014081	-3.6181	-0.0017395	480.7902705907537	22.439	0.50928	22.254	21.906	22.415	-0.18539					24	10	3	0	0	0	0.027866	1	767	767		24.203	0	1	76730	+		32527	36859	22416	22458	37382	37382					0.08776716596742062
KLIPGLNN	8	Unmodified	_KLIPGLNN_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.2741394042969	2	434.766178	867.517802	-0.33063	-0.00014375	1.3486	0.00058632	1.018	0.00044257	434.7667029915954	54.762	0.70394	54.616	54.353	55.057	-0.14609					53	18	5	0	0	0	0.027866	1	5830	5830		44.117	0	1	1183000			32528	2270	22417	22459	37383	37383					0.07874392622716186
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.8338928222656	2	511.83406	1021.65357	-0.38496	-0.00019703	0.05633	2.8832E-05	-0.32863	-0.0001682	511.83400772983464	72.755	1.1047	72.755	72.333	73.438	0					104	27	6	0	0	0	0.021872	4	8864	8838;8853;8864;8876		148.04	68.592	1	4575600			32529	983	22418	22460	37384;37385;37386;37387	37386					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.83416748046875	2	511.83406	1021.65357	0.14912	7.6324E-05	-0.43638	-0.00022335	-0.28726	-0.00014703	511.8337258261736	73.134	1.103	72.862	72.435	73.538	-0.27142					83	27	4	0	0	0	0.020687	4	8870	8859;8870;8881;8908		148.99	49.612	1	5141900			32530	983	22418	22460	37388;37389;37390;37391	37389					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.8341064453125	2	511.83406	1021.65357	-0.051529	-2.6374E-05	-0.30843	-0.00015787	-0.35996	-0.00018424	511.8338327367183	72.79	1.1082	72.8	72.411	73.519	0.0096512					110	27	6	0	0	0	0.013293	4	8792	8775;8792;8804;8817		176.09	79.896	1	4732800			32531	983	22418	22460	37392;37393;37394;37395	37393					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.833984375	2	511.83406	1021.65357	-0.2171	-0.00011112	0.10436	5.3413E-05	-0.11275	-5.7709E-05	511.8339658922726	72.924	0.92167	72.659	72.256	73.178	-0.26479					57	21	4	0	0	0	0.16638	3	8551	8551;8568;8580		95.815	27.028	1	1677200			32532	983	22418	22460	37396;37397;37398	37396					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.8335266113281	2	511.83406	1021.65357	-0.50409	-0.00025801	0.30202	0.00015459	-0.20207	-0.00010343	511.834052907497	72.758	0.87589	72.56	72.163	73.039	-0.19811					57	20	5	0	0	0	0.1158	4	8508	8508;8519;8531;8543		107.01	29.398	1	1479100			32533	983	22418	22460	37399;37400;37401;37402	37399					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENST00000496778.1_1_1:39317285-39318153:-|nuORF;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENST00000496778.1_1_1:39317285-39318153:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	511.83406	1021.65357	-0.21832	-0.00011174	0.17134	8.7698E-05	-0.046976	-2.4044E-05	511.83393937221024	72.986	0.72588	72.709	72.325	73.051	-0.27689	-0.01549	0.00028004	NaN	176.09	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1204300			32534	983	22418	22460							0.14360667413507144
KLIQLQFEV	9	Unmodified	_KLIQLQFEV_					0	0	0		ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2693481445312	2	559.334424	1116.6543	0.63835	0.00035705	-0.31243	-0.00017476	0.32591	0.0001823	559.3339083960825	70.462	0.471	70.462	70.316	70.787	0					14	10	2	0	0	0	0.024374	1	8511	8511		32.812	8.2932	1	348060			32535	13440	22419	22461	37403	37403					0.10063462062544204
KLIRIGGPQN	10	Unmodified	_KLIRIGGPQN_					0	0	0			REV__ENST00000573547.1_1_17:5378006-5383474:-|nuORF	REV__ENST00000573547.1_1_17:5378006-5383474:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3349609375	2	548.33529	1094.65603	-1.2642	-0.00069323	0.16338	8.9587E-05	-1.1009	-0.00060364	548.3353500196921	43.555	1.0073	43.555	43.113	44.12	0					80	27	5	0	0	0	1.0508	1	4101	4101		39.253	7.723	1	7840100	+		32536	20486	22420	22462	37404	37404					0.11248515871193376
KLIRPHLL	8	Unmodified	_KLIRPHLL_					0	0	0			REV__ENST00000529940.5_1_11:8752463-8832809:-|nuORF	REV__ENST00000529940.5_1_11:8752463-8832809:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2980041503906	2	495.334562	988.65457	-0.30771	-0.00015242	4.4166	0.0021877	4.1089	0.0020353	495.33663810038115	54.485	0.36787	54.485	54.321	54.689	0					15	10	3	0	0	0	0.027866	1	5983	5983		20.482	5.8177	1	228260	+		32537	34520	22421	22463	37405	37405					0.15978926573086483
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3425903320312	2	536.342249	1070.66995	-0.80038	-0.00042928	0.5422	0.00029081	-0.25818	-0.00013847	536.3424671143147	50.462	1.6255	50.462	50.178	51.803	0					110	46	4	0	0	0	0.01896	3	5296	5285;5296;5308		150.36	5.4316	1	6419800			32538	1685	22422	22464	37406;37407;37408	37407					0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3424072265625	2	536.342249	1070.66995	-0.55444	-0.00029737	0.4106	0.00022022	-0.14383	-7.7143E-05	536.3423915999223	50.75	1.5819	50.601	50.193	51.775	-0.14916					107	43	4	0	0	0	0.014738	2	5301	5290;5301		163.15	17.995	1	7432500			32539	1685	22422	22464	37409;37410	37410					0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3424072265625	2	536.342249	1070.66995	-0.59739	-0.0003204	0.44494	0.00023864	-0.15244	-8.1762E-05	536.3424345627334	50.339	1.4549	50.42	50.117	51.571	0.08099					104	41	4	0	0	0	0.012922	2	5196	5196;5208		172.25	18.13	1	7264000			32540	1685	22422	22464	37411;37412	37411					0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.342249	1070.66995	-0.14772	-7.9227E-05	-0.23331	-0.00012514	-0.38103	-0.00020436	536.341973021091	50.432	0.55616	50.326	50.088	50.644	-0.10558	-0.10943	-0.0006916	NaN	172.25	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636190			32541	1685	22422	22464							0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.342249	1070.66995	-0.14887	-7.9846E-05	0.04566	2.449E-05	-0.10321	-5.5356E-05	536.3421563696454	50.762	0.55391	50.485	50.224	50.778	-0.27643	0.0495	-0.00039235	NaN	172.25	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635600			32542	1685	22422	22464							0.1374374857962266
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.342249	1070.66995	-0.32152	-0.00017244	0.0091844	4.926E-06	-0.31233	-0.00016752	536.3421783836492	50.5	0.43895	50.319	50.133	50.572	-0.18071	-0.11611	-0.00043148	NaN	172.25	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642220			32543	1685	22422	22464							0.1374374857962266
KLISKIEEP	9	Unmodified	_KLISKIEEP_					0	0	0			REV__ENSG00000095464|ENST00000371447|PDE6C	REV__ENSG00000095464|ENST00000371447|PDE6C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3218383789062	2	528.818607	1055.62266	-0.23621	-0.00012491	2.0599	0.0010893	1.8237	0.0009644	528.8191246765933	70.082	1.421	70.095	69.349	70.77	0.012421					99	36	4	0	0	0	0.53979	1	8391	8391		56.721	1.9447	1	12808000	+		32544	20965	22423	22465	37413	37413					0.09707469308614236
KLISLAQNIN	10	Unmodified	_KLISLAQNIN_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2999877929688	2	557.334956	1112.65536	-0.14018	-7.8129E-05	-0.098393	-5.4838E-05	-0.23858	-0.00013297	557.3348299169668	67.952	0.78793	67.663	67.388	68.176	-0.28834					35	19	2	0	0	0	0.03519	1	8161	8161		45.972	0	1	1067600	+		32545	27671	22424	22466	37414	37414					0.1035367643146401
KLISLAQNIN	10	Unmodified	_KLISLAQNIN_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.2994384765625	2	557.334956	1112.65536	0.49266	0.00027458	-0.80038	-0.00044608	-0.30772	-0.0001715	557.3344477688809	67.742	0.69057	67.761	67.508	68.198	0.018913					32	17	2	0	0	0	0.03519	1	8067	8067		37.812	0	1	1032200	+		32546	27671	22424	22466	37415	37415					0.1035367643146401
KLISLAQNIN	10	Unmodified	_KLISLAQNIN_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.334956	1112.65536	0.25138	0.0001401	-0.63843	-0.00035582	-0.38705	-0.00021571	557.3345551854379	67.548	0.66122	67.548	67.285	67.947	0	-0.1093	-0.00014383	NaN	44.377	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1165900	+		32547	27671	22424	22466							0.1035367643146401
KLISPQSVL	9	Unmodified	_KLISPQSVL_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.80853271484375	2	492.808042	983.601532	-0.41844	-0.00020621	1.38	0.00068009	0.96159	0.00047388	492.80847590667224	67.047	0.49921	66.765	66.499	66.998	-0.28149					22	12	2	0	0	0	0.77768	1	7944	7944		40.778	1.5253	1	2130900	+		32548	35379	22425	22467	37416	37416					0.10907503999760593
KLISPQSVL	9	Unmodified	_KLISPQSVL_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.808042	983.601532	-0.0033327	-1.6424E-06	1.02	0.00050266	1.0167	0.00050102	492.80830159277446	66.735	0.57801	66.735	66.348	66.926	0	-0.025362	-0.00017076	NaN	40.778	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1552500	+		32549	35379	22425	22467							0.10907503999760593
KLISPQSVL	9	Unmodified	_KLISPQSVL_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	492.808042	983.601532	-0.41844	-0.00020621	1.38	0.00068009	0.96159	0.00047388	492.80847590667224	67.047	0.49921	66.765	66.499	66.998	-0.28149	0.005217	0.0001841	NaN	40.778	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2130900	+		32550	35379	22425	22467							0.10907503999760593
KLISPQSVL	9	Unmodified	_KLISPQSVL_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.808042	983.601532	-0.38714	-0.00019079	1.1626	0.00057294	0.77546	0.00038216	492.808338405966	66.754	0.57095	66.78	66.459	67.03	0.025734	0.020145	-3.0204E-05	NaN	40.778	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1322400	+		32551	35379	22425	22467							0.10907503999760593
KLITDSCSLK	10	Unmodified	_KLITDSCSLK_					0	0	0			REV__ENSG00000149133|ENST00000278409|OR5F1	REV__ENSG00000149133|ENST00000278409|OR5F1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.30517578125	2	554.307549	1106.60055	-0.085714	-4.7512E-05	-3.1266	-0.0017331	-3.2123	-0.0017806	554.305693044405	43.741	0.98611	43.772	43.116	44.102	0.030827					80	26	5	0	0	0	0.54106	1	4062	4062		83.647	0.89654	1	3440700	+		32552	24657	22426	22468	37417	37417					0.051509215685200616
KLITLASLL	9	Unmodified	_KLITLASLL_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.29205322265625	2	486.328611	970.642668	-0.48864	-0.00023764	3.3268	0.0016179	2.8381	0.0013803	486.33061939549884	81.851	0.19954	81.851	81.791	81.99	0					6	4	2	0	0	0	0.024541	1	10220	10220		16.473	0	1	172460			32553	724	22427	22469	37418	37418					0.15617265039236372
KLIVFIAHF	9	Unmodified	_KLIVFIAHF_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.S2127F|1|0.25|ENSG00000124486|chrX:41218542-41218542|C/T|missense_variant;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2581787109375	2	544.33677	1086.65899	-1.0909	-0.0005938	1.1273	0.00061363	0.036422	1.9826E-05	544.3372049357049	61.088	0.6533	60.911	60.635	61.289	-0.1761					35	15	3	0	0	0	0.024466	1	6799	6799		12.207	1.9416	1	639530			32554	4051;3357	22428	22470	37419	37419					0.11912390995985334
KLIVQHQT	8	Unmodified	_KLIVQHQT_					0	0	0			REV__ENST00000604297.1_1_X:46421998-46422040:-|nuORF	REV__ENST00000604297.1_1_X:46421998-46422040:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2196350097656	2	483.790184	965.565815	-0.08763	-4.2394E-05	0.38146	0.00018455	0.29383	0.00014215	483.78987707303645	32.258	0.46492	32.101	31.819	32.284	-0.15772					18	10	2	0	0	0	0.027866	1	2185	2185		23.042	3.6825	1	185290	+		32555	35906	22429	22471	37420	37420					0.08165466542754984
KLIVRILEP	9	Unmodified	_KLIVRILEP_					0	0	0			REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.7840576171875	2	540.860609	1079.70667	-0.69623	-0.00037656	0.33624	0.00018186	-0.35998	-0.0001947	540.8607992696876	67.278	0.27728	67.301	67.112	67.389	0.023911					9	6	2	0	0	0	0.022832	1	7951	7951		71.877	15.156	1	72343	+		32556	22187	22430	22472	37421	37421					0.17000045196186875
KLIWAPPPP	9	Unmodified	_KLIWAPPPP_					0	0	0			REV__ENST00000380752.9_1_13:30127969-30169614:-|nuORF	REV__ENST00000380752.9_1_13:30127969-30169614:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2838134765625	2	509.807845	1017.60114	0.058713	2.9932E-05	0.99865	0.00050912	1.0574	0.00053905	509.8078827153559	46.3	0.90274	46.203	45.887	46.789	-0.096649					54	24	3	0	0	0	0.024412	1	4474	4474		40.573	26.797	1	2496000	+		32557	31497	22431	22473	37422	37422					0.09304129070551426
KLIWAPPPP	9	Unmodified	_KLIWAPPPP_					0	0	0			REV__ENST00000380752.9_1_13:30127969-30169614:-|nuORF	REV__ENST00000380752.9_1_13:30127969-30169614:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2840270996094	2	509.807845	1017.60114	-0.30894	-0.0001575	1.1284	0.00057527	0.81947	0.00041777	509.80777025052095	46.56	1.0214	46.298	45.93	46.951	-0.26118					58	27	4	0	0	0	0.024412	1	4473	4473		24.203	0	1	2612300	+		32558	31497	22431	22473	37423	37423					0.09304129070551426
KLIWAPPPP	9	Unmodified	_KLIWAPPPP_					0	0	0			REV__ENST00000380752.9_1_13:30127969-30169614:-|nuORF	REV__ENST00000380752.9_1_13:30127969-30169614:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.807845	1017.60114	-0.25837	-0.00013172	-2.3894	-0.0012182	-2.6478	-0.0013499	509.80606570031006	45.968	0.31469	45.968	45.885	46.199	0	-0.19238	-0.0029827	NaN	17.365	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82680	+		32559	31497	22431	22473							0.09304129070551426
KLIYLPMP	8	Unmodified	_KLIYLPMP_					0	0	0			REV__ENSG00000137055|ENST00000397292|PLAA	REV__ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7920227050781	2	487.790807	973.56706	0.33726	0.00016451	-0.79423	-0.00038742	-0.45697	-0.0002229	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0239	1	10128	10128		33.516	0.022601	1	1999500	+		32560	23719	22432	22474	37424	37424					0.0792196458729677
KLKAADPTFV	10	Unmodified	_KLKAADPTFV_					0	0	0		ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3170166015625	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0393	1	11378	11378		40.778	0	1	11705000			32561	1548	22433	22475	37425	37425					0.08222889028456848
KLKAAKTI	8	Unmodified	_KLKAAKTI_					0	0	0			REV__ENSG00000029993|ENST00000325307|HMGB3	REV__ENSG00000029993|ENST00000325307|HMGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7747497558594	2	436.80002	871.585488	0.3037	0.00013266	1.974	0.00086225	2.2777	0.0009949	436.8014463320506	90.073	0.81931	90.056	89.498	90.317	-0.016716					27	19	2	0	0	0	0.027866	1	11385	11385		11.511	0	1	144970	+		32562	20041	22434	22476	37426	37426					0.14455842553513776
KLKAGDTVIP	10	Unmodified	_KLKAGDTVIP_					0	0	0		ENSG00000197894|ENST00000296412|ADH5;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENSG00000197894|ENST00000296412|ADH5	ENSG00000197894|ENST00000296412|ADH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2796020507812	2	521.318774	1040.623	0.15132	7.8888E-05	-0.10136	-5.2842E-05	0.049961	2.6046E-05	521.318272458093	60.107	0.22382	59.931	59.813	60.037	-0.1761					10	5	2	0	0	0	0.03519	1	6667	6667		13.454	0	1	79209			32563	10064	22435	22477	37427	37427					0.10430889028452839
KLKAKKAPP	9	Unmodified	_KLKAKKAPP_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.79522705078125	2	490.834394	979.654236	-0.54992	-0.00026992	-0.56133	-0.00027552	-1.1112	-0.00054544	490.83423514742475	48.522	0.17273	48.369	48.261	48.433	-0.15277					6	4	2	0	0	0	0.024535	1	4931	4931		12.207	0	1	84725	+		32564	19929	22436	22478	37428	37428					0.1635950685321177
KLKDIVATL	9	Unmodified	_KLKDIVATL_					0	0	0			REV__ENSG00000125686|ENST00000300651|MED1	REV__ENSG00000125686|ENST00000300651|MED1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.76593017578125	2	500.823692	999.632832	0.22078	0.00011057	-1.2539	-0.00062797	-1.0331	-0.00051739	500.823080062486	74.288	0.26172	74.105	74.005	74.267	-0.18279					9	5	2	0	0	0	0.024457	1	8756	8756		29.15	8.2026	1	99775	+		32565	22834	22437	22479	37429	37429					0.13300077033841262
KLKDKGKP	8	Unmodified	_KLKDKGKP_					0	0	0			REV__ENSG00000152778|ENST00000371795|IFIT5	REV__ENSG00000152778|ENST00000371795|IFIT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2662658691406	2	457.295102	912.575651	2.1539	0.00098499	-1.5475	-0.00070769	0.6064	0.0002773	457.29428070115	24.533	0.48093	24.352	24.198	24.678	-0.18089					15	10	2	0	0	0	0.027866	1	1051	1051		25.574	9.1009	1	92980	+		32566	24863	22438	22480	37430	37430					0.11586654548125352
KLKDKGKP	8	Unmodified	_KLKDKGKP_					0	0	0			REV__ENSG00000152778|ENST00000371795|IFIT5	REV__ENSG00000152778|ENST00000371795|IFIT5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.295102	912.575651	-0.13053	-5.9693E-05	-0.058657	-2.6824E-05	-0.18919	-8.6516E-05	457.29495072044995	24.688	0.38045	24.473	24.296	24.677	-0.2151	0.10588	3.3728E-05	NaN	25.574	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133070	+		32567	24863	22438	22480							0.11586654548125352
KLKDKGKP	8	Unmodified	_KLKDKGKP_					0	0	0			REV__ENSG00000152778|ENST00000371795|IFIT5	REV__ENSG00000152778|ENST00000371795|IFIT5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.295102	912.575651	-0.1929	-8.8212E-05	0.48898	0.00022361	0.29608	0.0001354	457.29497803834226	24.451	0.33618	24.276	24.089	24.425	-0.17484	-0.090915	0.00053459	NaN	25.574	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130520	+		32568	24863	22438	22480							0.11586654548125352
KLKDVLLQV	9	Unmodified	_KLKDVLLQV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3448486328125	2	528.344792	1054.67503	-1.0603	-0.0005602	0.45568	0.00024076	-0.60462	-0.00031945	528.3450138406308	54.304	1.5238	54.304	53.976	55.5	0					107	43	4	0	0	0	0.053401	2	5923	5911;5923		127.46	13.065	1	10691000			32569	2185	22439	22481	37431;37432	37432					0.14988052442208755
KLKDVLLQV	9	Unmodified	_KLKDVLLQV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3449096679688	2	528.344792	1054.67503	-0.28001	-0.00014794	-0.22044	-0.00011647	-0.50045	-0.00026441	528.3446522153711	54.399	1.3478	54.249	53.918	55.266	-0.15031					100	38	4	0	0	0	0.053401	3	5919	5907;5919;5931		127.46	11.736	1	9745900			32570	2185	22439	22481	37433;37434;37435	37434					0.14988052442208755
KLKDVLLQV	9	Unmodified	_KLKDVLLQV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3450927734375	2	528.344792	1054.67503	0.59735	0.00031561	-1.2292	-0.00064943	-0.63183	-0.00033382	528.3441043702363	54.141	1.4248	54.239	53.907	55.332	0.098015					108	40	5	0	0	0	0.043667	2	5812	5812;5837		131.03	17.073	1	9860600			32571	2185	22439	22481	37436;37437	37436					0.14988052442208755
KLKEARETC	9	Unmodified	_KLKEARETC_					0	0	0			REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7383422851562	2	539.289691	1076.56483	-0.1944	-0.00010484	3.79	0.0020439	3.5956	0.0019391	539.291634305762	36.736	0.93658	36.538	36.211	37.147	-0.19739					45	23	2	0	0	0	0.024447	1	2911	2911		32.812	3.6629	1	642440	+		32572	21671	22440	22482	37438	37438					0.02960884111530504
KLKEGMLSI	9	Unmodified	_KLKEGMLSI_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8034362792969	2	509.801903	1017.58925	0.56391	0.00028748	2.8432	0.0014495	3.4071	0.0017369	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.94809	1	10324	10324		29.15	1.2673	1	3699900			32573	198	22441	22483	37439	37439					0.08116144265068215
KLKEKEKEL	9	Unmodified	_KLKEKEKEL_					0	0	0			REV__ENST00000491428.1_1_1:218458703-218475928:+|nuORF	REV__ENST00000491428.1_1_1:218458703-218475928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.850341796875	2	572.850438	1143.68632	1.0476	0.00060011	-1.1953	-0.0006847	-0.14767	-8.4594E-05	572.8497388899385	18.085	0.69034	17.929	17.705	18.396	-0.15637					38	13	4	0	0	0	0.48817	1	250	250		60.118	0	1	1862300	+		32574	20362	22442	22484	37440	37440					0.12022829745706076
KLKEKEKEL	9	Unmodified	_KLKEKEKEL_					0	0	0			REV__ENST00000491428.1_1_1:218458703-218475928:+|nuORF	REV__ENST00000491428.1_1_1:218458703-218475928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.8501586914062	2	572.850438	1143.68632	3.5059	0.0020083	-3.6574	-0.0020951	-0.15153	-8.6804E-05	572.8482381729805	18.142	0.79698	17.899	17.677	18.474	-0.24256					37	15	4	0	0	0	0.16638	1	233	233		95.815	10.654	1	757570	+		32575	20362	22442	22484	37441	37441					0.12022829745706076
KLKEKLKP	8	Unmodified	_KLKEKLKP_					0	0	0		ENST00000415772.5_1_7:72302228-72304559:+|nuORF;ENST00000490953.5_1_7:66456072-66459281:-|nuORF;ENSG00000126524|ENST00000246868|SBDS	ENST00000415772.5_1_7:72302228-72304559:+|nuORF	ENST00000415772.5_1_7:72302228-72304559:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.79522705078125	2	492.334227	982.653902	-1.0418	-0.00051289	1.3443	0.00066185	0.30256	0.00014896	492.3345972860725	25.101	0.29694	25.066	24.904	25.201	-0.034395					10	6	2	0	0	0	0.027866	1	1139	1139		7.6903	0	1	39196			32576	4204	22443	22485	37442	37442					0.1618808713336648
KLKEKQSN	8	Unmodified	_KLKEKQSN_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79498291015625	2	487.785099	973.555644	-0.86144	-0.0004202	0.68173	0.00033254	-0.17971	-8.7658E-05	487.7853098032792	27.89	0.48908	27.972	27.759	28.249	0.081293					18	11	2	0	0	0	0.027866	1	1561	1561		20.947	0	1	345360	+		32577	22952	22444	22486	37443	37443					0.0678085881751258
KLKEPVTI	8	Unmodified	_KLKEPVTI_					0	0	0			REV__ENST00000468588.1_1_1:109779820-109780507:+|nuORF	REV__ENST00000468588.1_1_1:109779820-109780507:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.28826904296875	2	464.29731	926.580068	-0.39209	-0.00018204	0.77781	0.00036113	0.38572	0.00017909	464.2975016487382	61.652	0.66598	61.652	61.414	62.08	0					42	17	3	0	0	0	0.027866	1	7162	7162		34.173	0	1	2179900	+		32578	20045	22445	22487	37444	37444					0.1138411897103424
KLKEQPTLKPQ	11	Unmodified	_KLKEQPTLKPQ_					0	0	0			REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF	REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.27386474609375	3	437.266122	1308.77654	0.35099	0.00015347	3.955	0.0017294	4.306	0.0018829	437.2677812160986	52.343	1.3186	52.196	51.777	53.096	-0.14735					93	34	4	0	0	0	0.02473	1	5691	5691		21.032	3.8655	1	852650	+		32579	35579	22446	22488	37445	37445					0.13449879074119053
KLKEQPTLKPQ	11	Unmodified	_KLKEQPTLKPQ_					0	0	0			REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF	REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	437.266122	1308.77654	-0.26068	-0.00011399	4.5673	0.0019971	4.3066	0.0018831	437.26821369799853	51.958	1.2829	51.84	51.357	52.64	-0.11875	-0.20177	0.00061505	NaN	19.627	76	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666120	+		32580	35579	22446	22488							0.13449879074119053
KLKEQPTLKPQ	11	Unmodified	_KLKEQPTLKPQ_					0	0	0			REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF	REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	437.266122	1308.77654	-1.751	-0.00076566	5.9356	0.0025955	4.1846	0.0018298	437.26893928609326	52.216	1.1222	51.947	51.511	52.633	-0.26903	-0.094318	0.0024101	NaN	19.627	75	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736290	+		32581	35579	22446	22488							0.13449879074119053
KLKERGPTKVL	11	Unmodified	_KLKERGPTKVL_					0	0	0			REV__ENSG00000143157|ENST00000367876|POGK	REV__ENSG00000143157|ENST00000367876|POGK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.24578857421875	3	423.606478	1267.79761	-1.2425	-0.00052632	1.1811	0.00050031	-0.061398	-2.6009E-05	423.60688644209085	30.896	0.87551	30.896	30.634	31.509	0					54	20	4	0	0	0	0.024757	1	1993	1993		15.337	8.3188	1	914920	+		32582	24205	22447	22489	37446	37446					0.17441889173642267
KLKERGPTKVL	11	Unmodified	_KLKERGPTKVL_					0	0	0			REV__ENSG00000143157|ENST00000367876|POGK	REV__ENSG00000143157|ENST00000367876|POGK	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	423.606478	1267.79761	-0.47651	-0.00020185	0.31285	0.00013253	-0.16366	-6.9326E-05	423.6065259177474	30.843	0.92071	30.855	30.584	31.505	0.011799	0.042577	-0.00050998	NaN	10.998	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	852690	+		32583	24205	22447	22489							0.17441889173642267
KLKERGPTKVL	11	Unmodified	_KLKERGPTKVL_					0	0	0			REV__ENSG00000143157|ENST00000367876|POGK	REV__ENSG00000143157|ENST00000367876|POGK	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	423.606478	1267.79761	-0.23356	-9.8939E-05	0.29801	0.00012624	0.06445	2.7301E-05	423.60653139011686	30.612	0.94995	30.686	30.461	31.411	0.074314	-0.12585	-0.00052884	NaN	10.998	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578080	+		32584	24205	22447	22489							0.17441889173642267
KLKFKSGGKMA	11	Unmodified	_KLKFKSGGKMA_					0	0	0			REV__ENSG00000163798|ENST00000326019|SLC4A1AP	REV__ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8566284179688	2	597.855001	1193.69545	-1.8915	-0.0011309	3.8523	0.0023031	1.9608	0.0011723	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0238	1	11486	11486		31.53	1.2121	1	5655800	+		32585	25634	22448	22490	37447	37447					0.10634899830415634
KLKFNLFSKAI	11	Unmodified	_KLKFNLFSKAI_					0	0	0		ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000565884.5_1_16:20817227-20817407:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.7533874511719	3	436.939458	1307.79654	0.75012	0.00032776	-0.056522	-2.4697E-05	0.6936	0.00030306	436.93954604382003	49.692	1.1677	49.512	49.078	50.245	-0.18071					49	30	2	0	0	0	0.024792	1	5007	5007		9.2118	2.5522	1	129970			32586	16930	22449	22491	37448	37448					0.15495674804765258
KLKFRGRIA	9	Unmodified	_KLKFRGRIA_					0	0	0		ENST00000581582.1_1_19:40788282-40788770:-|nuORF	ENST00000581582.1_1_19:40788282-40788770:-|nuORF	ENST00000581582.1_1_19:40788282-40788770:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.7583618164062	2	544.856193	1087.69783	-0.026308	-1.4334E-05	-0.11464	-6.2461E-05	-0.14095	-7.6795E-05	544.8559774116638	25.264	0.75831	25.093	24.865	25.623	-0.17151					30	17	3	0	0	0	0.024541	1	1228	1228		24.203	3.7209	1	311390			32587	17168	22450	22492	37449	37449					0.15749116350389158
KLKFSQFLET	10	Unmodified	_KLKFSQFLET_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2586669921875	3	414.236051	1239.68632	-1.2888	-0.00053386	1.3214	0.00054736	0.032586	1.3498E-05	414.23648160864013	38.875	0.50971	38.711	38.285	38.795	-0.16459					18	13	2	0	0	0	0.03519	1	3232	3232		20.03	0.7678	1	188340			32588	2210	22451	22493	37450	37450					0.07606829745691357
KLKFTSVT	8	Unmodified	_KLKFTSVT_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;NEB|p.D3181E|1|0.07|ENSG00000183091|chr2:151627077-151627077|G/C|missense_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2820129394531	2	462.28166	922.548768	-1.0798	-0.00049918	2.1454	0.00099179	1.0656	0.00049261	462.2825238162385	75.386	0.62288	75.386	75.036	75.659	0					42	16	3	0	0	0	1.0574	1	9242	9242		13.775	0	1	1388500			32589	9199	22452	22494	37451	37451					0.08439545936960258
KLKFTSVT	8	Unmodified	_KLKFTSVT_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;NEB|p.D3181E|1|0.07|ENSG00000183091|chr2:151627077-151627077|G/C|missense_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	462.28166	922.548768	-0.32554	-0.00015049	1.1932	0.00055157	0.86761	0.00040108	462.2820901838478	75.59	0.72735	75.346	74.997	75.724	-0.24455	-0.030304	0.0001237	NaN	13.775	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1326500			32590	9199	22452	22494							0.08439545936960258
KLKGDVPSL	9	Unmodified	_KLKGDVPSL_					0	0	0		ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENST00000465558.5_1_2:219612840-219617731:+|nuORF	ENST00000465558.5_1_2:219612840-219617731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2772521972656	2	478.792392	955.570232	-0.55158	-0.00026409	0.26194	0.00012542	-0.28964	-0.00013868	478.79237001145805	84.289	0.34165	84.217	84.004	84.346	-0.072769					11	7	2	0	0	0	0.024447	1	10498	10498		13.454	0	1	69241			32591	14787	22453	22495	37452	37452					0.09066930965661868
KLKGKRDL	8	Unmodified	_KLKGKRDL_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11;nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2838439941406	2	479.313826	956.613099	0.30293	0.0001452	2.9354	0.001407	3.2384	0.0015522	479.31516740782536	75.443	0.18138	75.454	75.288	75.47	0.010376					5	4	2	0	0	0	0.027866	1	9164	9164		20.482	7.5226	1	475150			32592	948	22454	22496	37453	37453					0.13305745813738667
KLKGLRSA	8	Unmodified	_KLKGLRSA_					0	0	0		nc|ENSG00000188508|P60985-2|KRTDAP;ENSG00000188508|ENST00000338897|KRTDAP	nc|ENSG00000188508|P60985-2|KRTDAP	nc|ENSG00000188508|P60985-2|KRTDAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.493896484375	2	436.787444	871.560336	3.536	0.0015445	-3.2943	-0.0014389	0.24177	0.0001056	436.78583525376877	18.442	0.30037	18.199	18.074	18.374	-0.24256					7	5	2	0	0	0	0.027866	1	282	282		3.6843	2.4792	1	14291			32593	9725	22455	22497	37454	37454					0.11941787750936328
KLKKGLSVL	9	Unmodified	_KLKKGLSVL_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3059997558594	2	493.342052	984.669552	0.035999	1.776E-05	2.5496	0.0012578	2.5856	0.0012756	493.3431360954903	69.183	0.40659	69.183	68.938	69.344	0					16	10	2	0	0	0	0.024477	1	8292	8292		27.882	1.0861	1	173100	+		32594	23660	22456	22498	37455	37455					0.1766037365041484
KLKKGNRELQ	10	Unmodified	_KLKKGNRELQ_					0	0	0		ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENST00000459831.1_1_1:89524386-89525013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.2388000488281	3	405.250695	1212.73025	0.13606	5.5138E-05	-2.8716	-0.0011637	-2.7355	-0.0011086	405.2501473343029	27.115	0.4083	27.102	26.869	27.277	-0.012983					22	10	3	0	0	0	0.03519	1	1424	1424		32.751	0	1	148650			32595	14639	22457	22499	37456	37456					0.13239858962697326
KLKKGNVVGE	10	Unmodified	_KLKKGNVVGE_					0	0	0			REV__ENSG00000132591|ENST00000254928|ERAL1	REV__ENSG00000132591|ENST00000254928|ERAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3115844726562	2	536.329673	1070.64479	-0.43601	-0.00023385	2.2354	0.0011989	1.7993	0.00096504	536.3303458323592	34.247	0.10822	34.242	34.19	34.298	-0.0045624					4	2	2	0	0	0	0.03519	1	2534	2534		44.377	0	1	33177	+		32596	23295	22458	22500	37457	37457					0.11229693777045213
KLKKISVNI	9	Unmodified	_KLKKISVNI_					0	0	0			REV__nc|ENSG00000138684|Q9HBE4-2|IL21	REV__nc|ENSG00000138684|Q9HBE4-2|IL21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3070068359375	2	521.852784	1041.69102	-0.892	-0.00046549	0.56034	0.00029241	-0.33166	-0.00017308	521.852929386467	53.238	0.43527	53.091	52.91	53.346	-0.14724					18	11	2	0	0	0	0.024292	1	5713	5713		49.442	7.0454	1	161050	+		32597	23885	22459	22501	37458	37458					0.17183758679129824
KLKKITKT	8	Unmodified	_KLKKITKT_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29229736328125	2	480.334227	958.653902	0.59581	0.00028619	-0.033436	-1.606E-05	0.56237	0.00027013	480.33436669616924	55.944	0.21341	55.944	55.786	55.999	0					6	5	2	0	0	0	0.027866	1	6184	6184		7.6903	6.2255	1	46777			32598	1335	22460	22502	37459	37459					0.17292087133353107
KLKKKKKV	8	Unmodified	_KLKKKKKV_					0	0	0		ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3128967285156	2	500.373687	998.732821	-0.26466	-0.00013243	-2.5732	-0.0012876	-2.8378	-0.00142	500.3717903714156	76.17	0.31253	76.17	75.956	76.268	0					10	7	2	0	0	0	0.027866	1	9353	9353		8.2313	0	1	68328			32599	11731	22461	22503	37460	37460					0.23340359158316915
KLKKKKKV	8	Unmodified	_KLKKKKKV_					0	0	0		ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.373687	998.732821	-0.32816	-0.0001642	-4.9507	-0.0024772	-5.2789	-0.0026414	500.3713068532539	76.256	0.19142	75.988	75.817	76.008	-0.26806	-0.044172	0.0033273	NaN	8.2313	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115120			32600	11731	22461	22503							0.23340359158316915
KLKKKKKV	8	Unmodified	_KLKKKKKV_					0	0	0		ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.373687	998.732821	-0.094946	-4.7509E-05	-8.2114	-0.0041088	-8.3063	-0.0041563	500.36929673231515	76.311	0.23637	76.06	75.867	76.103	-0.25162	0.027644	6.4214E-05	NaN	8.2313	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26877			32601	11731	22461	22503							0.23340359158316915
KLKKKKKV	8	Unmodified	_KLKKKKKV_					0	0	0		ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.373687	998.732821	-0.26052	-0.00013036	-12.601	-0.0063051	-12.861	-0.0064354	500.36730461444523	76.079	0.23116	75.911	75.741	75.972	-0.16854	-0.12125	-0.0043284	NaN	8.2313	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83307			32602	11731	22461	22503							0.23340359158316915
KLKKKVAIFIF	11	Unmodified	_KLKKKVAIFIF_					0	0	0			REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.6361083984375	3	445.635598	1333.88496	-0.14356	-6.3977E-05	1.1719	0.00052223	1.0283	0.00045825	445.6360158251409	38.894	1.0496	38.894	38.721	39.771	0					135	29	5	0	0	0	1.1045	1	3310	3310		10.104	0.8921	1	5170400	+		32603	34483	22462	22504	37461	37461					0.23137715115194624
KLKKLKAAL	9	Unmodified	_KLKKLKAAL_					0	0	0		ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENST00000576387.1_1_16:24960717-24966004:-|nuORF;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8110656738281	2	506.865695	1011.71684	0.60575	0.00030703	-3.2823	-0.0016637	-2.6766	-0.0013567	506.86353503080926	54.443	0.19819	54.541	54.393	54.591	0.098015					7	5	2	0	0	0	0.024541	1	5867	5867		7.6903	0	1	108660			32604	120	22463	22505	37462	37462					0.21144652921384477
KLKKMKTG	8	Unmodified	_KLKKMKTG_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000486117.1_1_2:100048385-100055261:-|nuORF;ENST00000482887.1_1_2:100053173-100055204:-|nuORF;nc|ENSG00000135945|Q9UBZ9-3|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.30035400390625	2	467.29933	932.584108	-0.63404	-0.00029629	3.3242	0.0015534	2.6901	0.0012571	467.30078445946174	92.148	1.2787	92.148	91.772	93.051	0					66	30	3	0	0	0	1.0574	2	11682	11682;11706		13.775	0	1	1791000			32605	4957	22464	22506	37463;37464	37463					0.11511885193112903
KLKKMKTG	8	Unmodified	_KLKKMKTG_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000486117.1_1_2:100048385-100055261:-|nuORF;ENST00000482887.1_1_2:100053173-100055204:-|nuORF;nc|ENSG00000135945|Q9UBZ9-3|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.3005676269531	2	467.29933	932.584108	-0.17023	-7.9548E-05	2.8018	0.0013093	2.6316	0.0012297	467.3005379277505	92.262	1.0623	92.253	91.795	92.858	-0.0082932					73	25	4	0	0	0	1.0574	1	11646	11646		17.365	2.7009	1	2527500			32606	4957	22464	22506	37465	37465					0.11511885193112903
KLKKMKTG	8	Unmodified	_KLKKMKTG_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000486117.1_1_2:100048385-100055261:-|nuORF;ENST00000482887.1_1_2:100053173-100055204:-|nuORF;nc|ENSG00000135945|Q9UBZ9-3|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.3006286621094	2	467.29933	932.584108	0.99819	0.00046645	1.83	0.00085517	2.8282	0.0013216	467.3000383657387	92.166	1.0564	92.175	91.832	92.888	0.0094147					68	25	4	0	0	0	1.0574	1	11624	11624		19.36	0	1	1808300			32607	4957	22464	22506	37466	37466					0.11511885193112903
KLKKMKTG	8	Unmodified	_KLKKMKTG_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000486117.1_1_2:100048385-100055261:-|nuORF;ENST00000482887.1_1_2:100053173-100055204:-|nuORF;nc|ENSG00000135945|Q9UBZ9-3|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.3004150390625	2	467.29933	932.584108	-0.083004	-3.8788E-05	2.7159	0.0012691	2.6329	0.0012303	467.3005238057235	92.342	1.3428	92.22	91.848	93.19	-0.12242					63	31	4	0	0	0	1.043	2	11359	11359;11371		30.504	0	1	1134100			32608	4957	22464	22506	37467;37468	37467					0.11511885193112903
KLKKMTSF	8	Oxidation (M)	_KLKKM(Oxidation (M))TSF_		KLKKM(1)TSF		KLKKM(59)TSF	0	0	1		ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.7913513183594	2	499.788795	997.563038	-0.65376	-0.00032674	3.969	0.0019837	3.3153	0.0016569	499.790769152799	29.705	1.0216	29.459	29.099	30.121	-0.24524					33	23	2	0	0	0	0.80469	1	1836	1836		58.782	8.7574	1	4505500			32609	13965	22465	22507	37469	37469		499			0.06415875093591694
KLKKMTSF	8	Oxidation (M)	_KLKKM(Oxidation (M))TSF_		KLKKM(1)TSF		KLKKM(51)TSF	0	0	1		ENST00000490863.5_1_1:54651905-54653456:-|nuORF;ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	ENST00000490863.5_1_1:54651905-54653456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.7916564941406	2	499.788795	997.563038	-0.72475	-0.00036222	4.0748	0.0020365	3.3501	0.0016743	499.79077422265095	29.637	1.0568	29.464	29.113	30.17	-0.17258					46	24	4	0	0	0	0.89627	1	1815	1815		51.335	8.861	1	4109400			32610	13965	22465	22507	37470	37470		499			0.06415875093591694
KLKKREMF	8	Unmodified	_KLKKREMF_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-2|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7923583984375	2	540.323337	1078.63212	-0.55017	-0.00029727	-2.9606	-0.0015997	-3.5108	-0.001897	540.320393258374	78.423	0.214	78.169	77.998	78.212	-0.25471					6	4	2	0	0	0	0.027866	1	9337	9337		19.36	0	1	26182	+		32611	21151	22466	22508	37471	37471					0.09594959113132973
KLKKRIPEDD	10	Unmodified	_KLKKRIPEDD_					0	0	0		ENST00000570269.2_3_3:114043589-114043748:-|nuORF	ENST00000570269.2_3_3:114043589-114043748:-|nuORF	ENST00000570269.2_3_3:114043589-114043748:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8816833496094	3	414.578588	1240.71394	-1.0481	-0.00043452	0.55882	0.00023168	-0.48928	-0.00020285	414.5786069310385	29.359	0.51775	29.114	28.881	29.399	-0.24524					28	11	4	0	0	0	0.03519	1	1768	1768		47.96	0	1	158010			32612	17025	22467	22509	37472	37472					0.10320733005960392
KLKKVLSE	8	Unmodified	_KLKKVLSE_					0	0	0			REV__ENSG00000141646|ENST00000342988|SMAD4	REV__ENSG00000141646|ENST00000342988|SMAD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7646179199219	2	472.810585	943.606617	-0.4358	-0.00020605	0.16418	7.7628E-05	-0.27162	-0.00012842	472.81058306153653	28.627	0.38736	28.458	28.254	28.641	-0.16897					11	8	2	0	0	0	0.027866	1	1660	1660		16.473	0	1	23019	+		32613	24115	22468	22510	37473	37473					0.13255807862378788
KLKLHMLGGLG	11	Unmodified	_KLKLHMLGGLG_					0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.8590087890625	2	583.857544	1165.70053	0.62503	0.00036493	1.6447	0.00096029	2.2698	0.0013252	583.8583386779724	97.147	1.1257	97.011	96.613	97.738	-0.13671					80	24	4	0	0	0	1.0284	1	12007	12007		30.504	0	1	1483900	+		32614	23344	22469	22511	37474	37474					0.12431203693017778
KLKLHMLGGLG	11	Unmodified	_KLKLHMLGGLG_					0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.8590087890625	2	583.857544	1165.70053	0.21983	0.00012835	2.1645	0.0012637	2.3843	0.0013921	583.8586504901666	97.148	1.1572	97.024	96.617	97.774	-0.12368					90	25	5	0	0	0	1.0575	1	12053	12053		23.042	2.0956	1	1344500	+		32615	23344	22469	22511	37475	37475					0.12431203693017778
KLKLIQQEV	9	Unmodified	_KLKLIQQEV_					0	0	0			REV__nc|ENSG00000141027|O75376-3|NCOR1	REV__nc|ENSG00000141027|O75376-3|NCOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.2949829101562	2	549.847699	1097.68084	-0.75666	-0.00041605	0.68466	0.00037646	-0.071996	-3.9587E-05	549.8474960822534	62.482	0.41097	62.545	62.442	62.853	0.062767					14	9	2	0	0	0	0.024495	1	7185	7185		26.693	0	1	282960	+		32616	24060	22470	22512	37476	37476					0.1359115095388006
KLKLKFWAQF	10	Unmodified	_KLKLKFWAQF_					0	0	0			REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	436.93402099609375	3	436.932414	1307.77541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.542	1	20.347	19.847	20.847	-0.19577								0	0	0	0.744	1	552	552		32.751	8.4746	1		+		32617	31998	22471	22513	37477	37477					0.13383709495860785
KLKLKVLAK	9	Unmodified	_KLKLKVLAK_					0	0	0			REV__PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	REV__PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7660522460938	2	520.881345	1039.74814	-0.75916	-0.00039543	2.5423	0.0013243	1.7832	0.00092882	521.3850471247224	47.464	0.16715	47.464	47.361	47.529	0					7	4	2	0	0	0	0.024541	1	4771	4771		24.203	5.8783	1	55504	+		32618	22423	22472	22514	37478	37478					0.2298522595549457
KLKLPGKQV	9	Unmodified	_KLKLPGKQV_					0	0	0			REV__ENST00000589852.5_1_19:16296199-16296328:+|nuORF	REV__ENST00000589852.5_1_19:16296199-16296328:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.82403564453125	2	505.839677	1009.6648	-0.54828	-0.00027734	3.128	0.0015823	2.5797	0.0013049	506.3413726797041	81.582	0.68484	81.451	81.176	81.86	-0.13075					22	16	2	0	0	0	0.024523	1	10122	10122		29.15	0	1	210430	+		32619	21490	22473	22515	37479	37479					0.16035489507657985
KLKLSLFKKI	10	Unmodified	_KLKLSLFKKI_					0	0	0			REV__ENSG00000180628|ENST00000336126|PCGF5	REV__ENSG00000180628|ENST00000336126|PCGF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5873107910156	3	406.616315	1216.82712	-0.16316	-6.6345E-05	1.8191	0.00073967	1.6559	0.00067332	406.61711668540624	25.395	0.17151	25.168	25.018	25.19	-0.22683					5	3	2	0	0	0	0.03519	1	1198	1198		33.922	4.7516	1	80206	+		32620	27351	22474	22516	37480	37480					0.22737453189779444
KLKLVNGTRGR	11	Unmodified	_KLKLVNGTRGR_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.393310546875	2	621.39367	1240.77279	-0.41964	-0.00026076	-0.53915	-0.00033503	-0.95879	-0.00059579	621.3932598253778	103.38	0.6693	103.38	103.14	103.81	-0.0046005					42	15	4	0	0	0	1.0521	1	13178	13178		24.519	1.9395	1	723940	+		32621	28263;19723	22475	22517	37481	37481					0.16203254090896735
KLKLVPSWEVP	11	Unmodified	_KLKLVPSWEVP_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.24285888671875	3	432.595579	1294.76491	-0.35068	-0.0001517	-2.0366	-0.00088102	-2.3873	-0.0010327	432.59490070107756	47.202	0.75662	47.261	46.766	47.522	0.059097					38	20	3	0	0	0	0.024723	1	4597	4597		17.167	0	1	553510	+		32622	28831	22476	22518	37482	37482					0.12931682050771087
KLKLVVGK	8	Unmodified	_KLKLVVGK_					0	0	0			REV__nc|ENSG00000163374|Q9H869-6|YY1AP1	REV__nc|ENSG00000163374|Q9H869-6|YY1AP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.7349548339844	2	442.818213	883.621873	0.081413	3.6051E-05	-0.033821	-1.4976E-05	0.047592	2.1075E-05	442.81805056035034	23.274	0.40629	23.072	22.873	23.279	-0.20193					15	8	2	0	0	0	0.027866	1	919	919		11.511	7.5258	1	106040	+		32623	25559	22477	22519	37483	37483					0.17540719450221331
KLKNHSLHLK	10	Unmodified	_KLKNHSLHLK_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.5875549316406	3	406.587418	1216.74043	0.41999	0.00017076	-0.79491	-0.0003232	-0.37491	-0.00015244	406.5873798753871	25.209	2.1595	25.038	24.647	26.806	-0.17078					142	54	6	0	0	0	1.1314	1	1161	1161		27.047	0	1	30937000	+		32624	28078	22478	22520	37484	37484					0.1407246668791231
KLKNKLIL	8	Unmodified	_KLKNKLIL_					0	0	0			REV__ENSG00000113532|ENST00000231461|ST8SIA4	REV__ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3136901855469	2	485.344595	968.674637	-1.1914	-0.00057824	1.8474	0.00089664	0.65604	0.0003184	485.3451586146805	44.226	0.1372	44.081	43.994	44.131	-0.14471					5	3	2	0	0	0	0.027866	1	4177	4177		13.775	1.5685	1	187780	+		32625	22071	22479	22521	37485	37485					0.18904677513046408
KLKNMANTC	9	Unmodified	_KLKNMANTC_					0	0	0			REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7847900390625	2	511.759712	1021.50487	0.10897	5.5764E-05	1.4762	0.00075547	1.5852	0.00081123	511.7602801561962	47.758	1.0479	47.571	47.004	48.052	-0.18684					50	27	2	0	0	0	0.024506	1	4624	4624		10.866	0	1	1035000	+		32626	32450	22480	22522	37486	37486					-0.005021298233600646
KLKPSLAL	8	Unmodified	_KLKPSLAL_					0	0	0			REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.730224609375	2	435.294571	868.574589	-0.68803	-0.0002995	0.012865	5.6E-06	-0.67517	-0.0002939	435.2943288741068	38.224	0.13163	38.141	38.05	38.182	-0.082516					5	3	2	0	0	0	0.027866	1	3165	3165		23.042	0	1	52788	+		32627	33166	22481	22523	37487	37487					0.13504440179224275
KLKPTVRNYV	10	Unmodified	_KLKPTVRNYV_					0	0	0		MAPK9|p.Q253K|1|0.09|ENSG00000050748|chr5:180242687-180242687|G/T|missense_variant	MAPK9|p.Q253K|1|0.09|ENSG00000050748|chr5:180242687-180242687|G/T|missense_variant	MAPK9|p.Q253K|1|0.09|ENSG00000050748|chr5:180242687-180242687|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.58465576171875	3	406.583674	1216.72919	-0.63054	-0.00025637	1.6886	0.00068656	1.0581	0.00043019	406.5843987793381	111.26	0.086395	111.12	111.07	111.16	-0.14127					6	3	2	0	0	0	1.1078	1	13592	13592		14.694	0.60766	1	389310			32628	17949	22482	22524	37488	37488					0.1294964459377752
KLKQEEKF	8	Unmodified	_KLKQEEKF_					0	0	0			REV__ENSG00000178965|ENST00000326665|ERICH3	REV__ENSG00000178965|ENST00000326665|ERICH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.7568359375	2	525.303124	1048.5917	-0.39437	-0.00020716	-1.9336	-0.0010157	-2.3279	-0.0012229	525.8032660744213	34.79	0.31822	34.603	34.479	34.798	-0.18675					13	7	2	0	0	0	0.027866	1	2569	2569		17.365	13.38	1	145220	+		32629	27218	22483	22525	37489	37489					0.06934315994362805
KLKQNEVANV	10	Unmodified	_KLKQNEVANV_					0	0	0		PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000464717.5_1_7:154739579-154754102:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1	PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant	PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.8297729492188	2	571.830037	1141.64552	-0.57662	-0.00032973	-0.050788	-2.9042E-05	-0.62741	-0.00035877	571.8300030646996	41.806	1.1374	41.806	41.505	42.642	0					103	32	5	0	0	0	0.0059825	1	3795	3795		177.3	1.2179	1	11111000			32630	6584	22484	22526	37490	37490					0.08036488426091637
KLKQWINL	8	Unmodified	_KLKQWINL_					0	0	0		nc|ENSG00000135773|O14815-2|CAPN9;ENSG00000135773|ENST00000271971|CAPN9	nc|ENSG00000135773|O14815-2|CAPN9	nc|ENSG00000135773|O14815-2|CAPN9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2448120117188	2	521.824027	1041.6335	-0.30248	-0.00015784	-3.4589	-0.0018049	-3.7614	-0.0019628	521.8221012740777	50.849	0.76639	50.7	50.495	51.261	-0.14916					49	21	3	0	0	0	0.027866	1	5325	5325		47.916	0	1	2449000			32631	4931	22485	22527	37491	37491					0.11434916473558587
KLKRMTTEFDI	11	Unmodified	_KLKRMTTEFDI_					0	0	0			REV__ENST00000463890.5_1_3:114099754-114107884:-|nuORF	REV__ENST00000463890.5_1_3:114099754-114107884:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.26043701171875	3	461.255117	1380.74352	-0.17901	-8.257E-05	3.2292	0.0014895	3.0502	0.0014069	461.2564804966594	37.419	0.43141	37.355	37.091	37.522	-0.063389					24	11	3	0	0	0	0.024739	1	3052	3052		22.562	0	1	263130	+		32632	32949	22486	22528	37492	37492					0.06837928959771489
KLKRVIEL	8	Unmodified	_KLKRVIEL_					0	0	0			REV__ENSG00000187210|ENST00000376730|GCNT1	REV__ENSG00000187210|ENST00000376730|GCNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.82684326171875	2	499.839677	997.664801	-0.79882	-0.00039928	1.9371	0.00096821	1.1382	0.00056893	499.8402290988647	22.034	0.28736	21.832	21.663	21.951	-0.20199					7	5	2	0	0	0	0.027866	1	717	717		45.952	12.436	1	34127	+		32633	27922	22487	22529	37493	37493					0.16587489507651298
KLKRYAWKRRW	11	Unmodified	_KLKRYAWKRRW_					0	0	0		GAB1|p.P452Sfs*30|1|0.55|ENSG00000109458|chr4:143440149-143440150|-/T|frameshift_variant;ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1	GAB1|p.P452Sfs*30|1|0.55|ENSG00000109458|chr4:143440149-143440150|-/T|frameshift_variant	GAB1|p.P452Sfs*30|1|0.55|ENSG00000109458|chr4:143440149-143440150|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3192138671875	3	530.987916	1589.94192	-0.038261	-2.0316E-05	-3.4096	-0.0018105	-3.4479	-0.0018308	530.9849186522008	104.1	1.5237	104.1	103.14	104.67	-0.0032196					78	36	4	0	0	0	1.1135	1	13260	13260		3.6191	0.76726	1	134220			32634	2977	22488	22530	37494	37494					0.1705457544426281
KLKTAPLPPAS	11	Unmodified	_KLKTAPLPPAS_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.845458984375	2	561.847699	1121.68084	-0.3824	-0.00021485	-3.1574	-0.001774	-3.5398	-0.0019889	561.8457535840084	95.407	1.1046	95.407	95.05	96.155	0					83	25	5	0	0	0	0.95882	2	12148	12136;12148		45.972	5.3996	1	1909400			32635	3057	22489	22531	37495;37496	37496					0.12487150953893433
KLKTAPLPPAS	11	Unmodified	_KLKTAPLPPAS_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.8458251953125	2	561.847699	1121.68084	-0.014521	-8.1585E-06	-3.3451	-0.0018794	-3.3596	-0.0018876	561.8456417925604	95.287	1.1033	95.291	95.001	96.104	0.0033722					76	25	4	0	0	0	1.0238	1	12113	12113		31.53	5.9558	1	1820900			32636	3057	22489	22531	37497	37497					0.12487150953893433
KLKTAPLPPAS	11	Unmodified	_KLKTAPLPPAS_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.845703125	2	561.847699	1121.68084	0.071573	4.0213E-05	-3.5519	-0.0019956	-3.4803	-0.0019554	561.8455167309728	95.387	1.0647	95.391	95.053	96.117	0.0041199					85	24	5	0	0	0	1.0017	2	12061	12061;12084		36.447	2.2742	1	1612900			32637	3057	22489	22531	37498;37499	37498					0.12487150953893433
KLKTAPLPPAS	11	Unmodified	_KLKTAPLPPAS_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.845947265625	2	561.847699	1121.68084	0.62451	0.00035088	-4.1348	-0.0023231	-3.5103	-0.0019722	561.8452346011154	95.499	1.1193	95.376	95.029	96.148	-0.12251					80	25	4	0	0	0	1.018	1	11789	11789		32.812	6.1195	1	1450600			32638	3057	22489	22531	37500	37500					0.12487150953893433
KLKVSAKQL	9	Unmodified	_KLKVSAKQL_					0	0	0			REV__FCHSD2-NUMA1|1|fusion	REV__FCHSD2-NUMA1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8372497558594	2	507.837134	1013.65972	3.2708	0.001661	-3.2579	-0.0016545	0.012885	6.5433E-06	507.83530199922353	17.163	0.22272	17.163	17.028	17.25	0					9	4	3	0	0	0	1.0148	1	140	140		17.365	0.89182	1	48372	+		32639	36034	22490	22532	37501	37501					0.153431856450311
KLKVSNGPK	9	Unmodified	_KLKVSNGPK_					0	0	0			REV__nc|ENSG00000169064|A8MT70|ZBBX	REV__nc|ENSG00000169064|A8MT70|ZBBX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.272216796875	2	485.805834	969.597115	-0.12677	-6.1584E-05	1.1908	0.00057848	1.064	0.00051689	485.80555367952155	32.721	0.57304	32.484	32.216	32.789	-0.23667					16	13	2	0	0	0	0.024477	1	2287	2287		14.865	0	1	123140	+		32640	26314	22491	22533	37502	37502					0.11110039576851705
KLKVTSGL	8	Unmodified	_KLKVTSGL_					0	0	0		ENST00000586719.5_1_19:12883476-12885666:-|nuORF;ENST00000589965.5_1_19:12876298-12886263:-|nuORF;ENST00000589134.5_1_19:12885194-12886263:-|nuORF;ENST00000590839.5_1_19:12883046-12889158:-|nuORF	ENST00000586719.5_1_19:12883476-12885666:-|nuORF	ENST00000586719.5_1_19:12883476-12885666:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2755126953125	2	423.276378	844.538203	-0.082883	-3.5082E-05	-3.2282	-0.0013664	-3.3111	-0.0014015	423.27490422918225	87.973	0.84181	87.795	87.405	88.247	-0.17875					58	20	4	0	0	0	1.0574	1	10733	10733		23.042	2.0956	1	1819200			32641	17251	22492	22534	37503	37503					0.10971563282521402
KLKYQCLKDQL	11	Unmodified	_KLKYQCLKDQL_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;nc|ENSG00000100629|Q6ZU80-1|CEP128	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2585754394531	3	460.595362	1378.76426	-0.36015	-0.00016588	0.19672	9.0608E-05	-0.16343	-7.5274E-05	460.595427312563	37.631	0.52586	37.631	37.343	37.869	0					26	14	2	0	0	0	0.024757	1	3122	3122		28.577	3.4507	1	1077600			32642	2233	22493	22535	37504	37504					0.09002519339446735
KLLAGHNQL	9	Unmodified	_KLLAGHNQL_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2728576660156	2	497.295633	992.576714	-0.67336	-0.00033486	-0.20543	-0.00010216	-0.87878	-0.00043702	497.29551914861406	40.114	0.26142	40.137	40.013	40.275	0.023006					9	6	2	0	0	0	0.024405	1	3468	3468		44.117	19.598	1	218950			32643	1719	22494	22536	37505	37505					0.08012868917023752
KLLAGHNQL	9	Unmodified	_KLLAGHNQL_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.295633	992.576714	0.55054	0.00027378	-1.0669	-0.00053057	-0.51638	-0.00025679	497.29490584540525	39.861	0.29099	39.861	39.771	40.062	0	-0.13804	-0.00028038	NaN	27.882	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187350			32644	1719	22494	22536							0.08012868917023752
KLLAGTTL	8	Unmodified	_KLLAGTTL_					0	0	0			REV__ENSG00000085377|ENST00000652536|PREP	REV__ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.58258056640625	2	408.763104	815.511654	0.69544	0.00028427	1.6462	0.00067289	2.3416	0.00095717	408.7636448756402	35.274	0.59828	35.318	34.977	35.575	0.04406					25	15	2	0	0	0	0.027866	1	2612	2612		30.504	19.638	1	66796	+		32645	20747	22495	22537	37506	37506					0.09651874391192905
KLLAKIESL	9	Unmodified	_KLLAKIESL_					0	0	0			REV__nc|ENSG00000072110|P12814-2|ACTN1	REV__nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.3005065917969	2	507.831517	1013.64848	0.021877	1.111E-05	-0.71071	-0.00036092	-0.68884	-0.00034981	507.83104815033516	46.687	1.1208	46.59	46.331	47.452	-0.096649					75	30	3	0	0	0	0.024457	1	4615	4615		21.96	1.9631	1	3057700	+		32646	20461	22496	22538	37507	37507					0.1422036355088494
KLLALLAVSL	10	Unmodified	_KLLALLAVSL_					0	0	0			REV__ENSG00000059377|ENST00000448866|TBXAS1	REV__ENSG00000059377|ENST00000448866|TBXAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.809814453125	2	520.857535	1039.70052	-0.55342	-0.00028825	-0.72481	-0.00037752	-1.2782	-0.00066578	520.8569838019604	53.638	0.44798	53.734	53.556	54.004	0.095669					18	12	2	0	0	0	0.03519	1	5734	5734		19.104	3.4617	1	200640	+		32647	20239	22497	22539	37508	37508					0.1822552696467028
KLLANLLW	8	Unmodified	_KLLANLLW_					0	0	0		nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825;nc|ENSG00000185261|Q8IV33-2|KIAA0825	nc|ENSG00000185261|Q8IV33-3|KIAA0825	nc|ENSG00000185261|Q8IV33-3|KIAA0825	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.27178955078125	2	485.807845	969.601138	0.29112	0.00014143	-2.7485	-0.0013353	-2.4574	-0.0011938	485.8057304045047	32.75	0.40274	32.557	32.335	32.738	-0.19261					14	9	2	0	0	0	0.027866	1	2291	2291		40.573	13.88	1	155870			32648	9422	22498	22540	37509	37509					0.11512129070547417
KLLAQHKDV	9	Unmodified	_KLLAQHKDV_					0	0	0			REV__ENST00000596701.1_1_19:50215059-50215239:+|nuORF	REV__ENST00000596701.1_1_19:50215059-50215239:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.3159790039062	2	526.316566	1050.61858	0.39159	0.0002061	-3.9646	-0.0020866	-3.573	-0.0018805	526.3143210714339	83.873	1.8748	83.662	82.79	84.665	-0.21159					92	43	4	0	0	0	0.70156	1	10175	10175		45.972	0.020292	1	2560400	+		32649	26326	22499	22541	37510	37510					0.09529424605557324
KLLCMRVLI	9	Unmodified	_KLLCMRVLI_					0	0	0		ENST00000315183.11_2_16:24836827-24836932:+|nuORF	ENST00000315183.11_2_16:24836827-24836932:+|nuORF	ENST00000315183.11_2_16:24836827-24836932:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.32080078125	2	544.837765	1087.66098	-0.61471	-0.00033492	2.8604	0.0015584	2.2456	0.0012235	544.8391605197671	72.83	0.94888	72.84	72.57	73.519	0.0096512					67	23	4	0	0	0	0.024	1	8777	8777		65.803	0	1	2563300			32650	12131	22500	22542	37511	37511					0.12065360417932425
KLLDEAIQAV	10	Unmodified	_KLLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3222045898438	2	550.321514	1098.62847	-0.89467	-0.00049235	-0.23125	-0.00012726	-1.1259	-0.00061961	550.3214406637695	62.961	1.0113	62.961	62.69	63.701	0					62	26	5	0	0	0	0.70466	1	7341	7341		66.962	10.528	1	3751800			32651	1401	22501	22543	37512	37512					0.08310567820262804
KLLDEAIQAV	10	Unmodified	_KLLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3213500976562	2	550.321514	1098.62847	-0.64042	-0.00035244	-0.12931	-7.1162E-05	-0.76973	-0.0004236	550.3213845355472	63.267	1.0164	63.02	62.648	63.664	-0.24609					60	26	4	0	0	0	0.52143	2	7352	7352;7365		85.862	10.709	1	3308900			32652	1401	22501	22543	37513;37514	37513					0.08310567820262804
KLLDEAIQAV	10	Unmodified	_KLLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.322509765625	2	550.321514	1098.62847	0.46749	0.00025727	-1.4855	-0.00081752	-1.018	-0.00056025	550.3207980161034	62.976	0.94212	63.03	62.719	63.662	0.054104					58	24	4	0	0	0	0.64214	1	7275	7275		72.243	3.3971	1	3725600			32653	1401	22501	22543	37515	37515					0.08310567820262804
KLLDEAIQAV	10	Unmodified	_KLLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.321514	1098.62847	-0.11493	-6.3247E-05	0.24395	0.00013425	0.12903	7.1006E-05	550.3216344141157	63.274	0.35802	63.053	62.899	63.257	-0.22097	0.012838	0.00073417	NaN	85.862	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210240			32654	1401	22501	22543							0.08310567820262804
KLLDEAIQAV	10	Unmodified	_KLLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.321514	1098.62847	-0.25595	-0.00014086	-0.13486	-7.4215E-05	-0.39081	-0.00021507	550.3212628943983	63.253	0.39921	63.069	62.873	63.272	-0.18386	0.029366	0.00031724	NaN	85.862	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260770			32655	1401	22501	22543							0.08310567820262804
KLLDEAIQAV	10	Unmodified	_KLLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.321514	1098.62847	0.18777	0.00010334	-0.22359	-0.00012305	-0.035817	-1.9711E-05	550.3210443833392	63.364	0.47224	63.106	62.917	63.39	-0.25824	0.06562	0.00021958	NaN	85.862	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291330			32656	1401	22501	22543							0.08310567820262804
KLLDFGSLSNL	11	Unmodified	_KLLDFGSLSNL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	603.8405151367188	2	603.840071	1205.66559	-0.2738	-0.00016533	0.35906	0.00021681	0.085256	5.1481E-05	603.8402020181622	80.383	0.57434	80.145	79.916	80.49	-0.23784					34	13	4	0	0	0	0.045178	1	9617	9617		123.11	54.265	1	661800			32657	9163	22502	22544	37516	37516					0.07098239366064263
KLLDFGSLSNL	11	Unmodified	_KLLDFGSLSNL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3391723632812	2	603.840071	1205.66559	-0.12611	-7.6148E-05	0.021753	1.3135E-05	-0.10435	-6.3013E-05	603.8399019474653	80.379	0.62241	80.172	79.886	80.508	-0.20632					41	14	4	0	0	0	0.25602	1	9643	9643		93.442	35.196	1	626160			32658	9163	22502	22544	37517	37517					0.07098239366064263
KLLDFGSLSNL	11	Unmodified	_KLLDFGSLSNL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.8397216796875	2	603.840071	1205.66559	-0.17473	-0.00010551	0.099928	6.034E-05	-0.074798	-4.5166E-05	603.8399907353153	80.257	0.66183	80.111	79.87	80.532	-0.146					35	15	3	0	0	0	0.063826	2	9610	9610;9622		117.71	27.105	1	579400			32659	9163	22502	22544	37518;37519	37518					0.07098239366064263
KLLDFGSLSNL	11	Unmodified	_KLLDFGSLSNL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	603.840071	1205.66559	-1.6276	-0.00098282	1.4996	0.00090552	-0.12802	-7.7302E-05	603.8409663465033	80.364	1.1399	80.364	80.078	81.218	0	0.10984	0.00049369	NaN	123.11	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706750			32660	9163	22502	22544							0.07098239366064263
KLLDFGSLSNL	11	Unmodified	_KLLDFGSLSNL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	603.840071	1205.66559	-1.3715	-0.00082817	1.2266	0.00074065	-0.14494	-8.7523E-05	603.84073184093	80.52	1.1049	80.369	80.091	81.196	-0.15169	0.1144	0.00016395	NaN	123.11	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630540			32661	9163	22502	22544							0.07098239366064263
KLLDFGSLSNL	11	Unmodified	_KLLDFGSLSNL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	603.840071	1205.66559	-2.0164	-0.0012176	1.9369	0.0011696	-0.079516	-4.8015E-05	603.841150656134	80.343	0.9398	80.364	80.104	81.044	0.021439	0.11008	0.0010218	NaN	123.11	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671850			32662	9163	22502	22544							0.07098239366064263
KLLDMELEM	9	Unmodified	_KLLDMELEM_					0	0	0		ENST00000558514.1_1_15:80460394-80460694:+|nuORF;nc|ENSG00000103876|P16930-2|FAH;ENSG00000103876|ENST00000561421|FAH	ENST00000558514.1_1_15:80460394-80460694:+|nuORF	ENST00000558514.1_1_15:80460394-80460694:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.845458984375	2	561.282686	1120.55082	-0.3652	-0.00020498	-1.6804	-0.0009432	-2.0456	-0.0011482	561.2821838411598	95.635	0.17262	95.635	95.562	95.735	0					5	3	2	0	0	0	0.024397	1	12185	12185		39.253	11.371	1	54514			32663	2531	22503	22545	37520	37520					-0.0046352943177225825
KLLDRFLS	8	Unmodified	_KLLDRFLS_					0	0	0		nc|ENSG00000186960|Q86U37|LINC01551;ENST00000399387.8_1_14:29242013-29261464:+|nuORF	nc|ENSG00000186960|Q86U37|LINC01551	nc|ENSG00000186960|Q86U37|LINC01551	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2623291015625	2	496.300384	990.586216	-0.40481	-0.00020091	-0.0058812	-2.9188E-06	-0.41069	-0.00020383	496.3002701280244	49.376	1.2512	49.275	48.841	50.093	-0.1008					53	32	4	0	0	0	0.027866	1	4909	4909		26.693	0	1	1247700			32664	13643	22504	22546	37521	37521					0.0905463720255284
KLLDRPNP	8	Unmodified	_KLLDRPNP_					0	0	0			REV__ENST00000510762.1_1_4:57244622-57253600:-|nuORF	REV__ENST00000510762.1_1_4:57244622-57253600:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.25531005859375	2	476.782359	951.550165	0.17125	8.1649E-05	-0.048279	-2.3018E-05	0.12297	5.8631E-05	476.78218944412055	42.102	1.0001	41.969	41.565	42.565	-0.13219					59	28	3	0	0	0	0.027866	1	3759	3759		18.324	0	1	2789700	+		32665	34108	22505	22547	37522	37522					0.07245180025699938
KLLDRPNP	8	Unmodified	_KLLDRPNP_					0	0	0			REV__ENST00000510762.1_1_4:57244622-57253600:-|nuORF	REV__ENST00000510762.1_1_4:57244622-57253600:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.782359	951.550165	1.0539	0.00050246	-1.003	-0.0004782	0.05088	2.4259E-05	476.7817547078941	41.936	0.74069	41.936	41.615	42.355	0	-0.016456	-0.00041678	NaN	18.324	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2869000	+		32666	34108	22505	22547							0.07245180025699938
KLLEACIFKNN	11	Unmodified	_KLLEACIFKNN_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.8884582519531	3	431.572557	1291.69584	-0.1902	-8.2083E-05	1.9372	0.00083603	1.747	0.00075394	431.573529216869	22.145	0.33091	21.96	21.764	22.094	-0.18539					11	6	2	0	0	0	0.02477	1	725	725		22.562	11.107	1	27569			32667	1175;38049	22506	22548	37523	37523					0.06166274759607404
KLLEDTIVPKI	11	Unmodified	_KLLEDTIVPKI_					0	0	0		sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.8932495117188	2	634.894846	1267.77514	0.73687	0.00046784	-4.0346	-0.0025616	-3.2978	-0.0020937	634.8922740551877	104.3	1.0119	104.3	103.98	104.99	0.0031357					77	28	5	0	0	0	1.0429	1	13387	13387		27.047	4.4677	1	1973800			32668	37928	22507	22549	37524	37524					0.1519624498534995
KLLEEAKLH	9	Unmodified	_KLLEEAKLH_					0	0	0			REV__SYNE1|p.R2232K|1|0.16|ENSG00000131018|chr6:152407042-152407042|C/T|missense_variant	REV__SYNE1|p.R2232K|1|0.16|ENSG00000131018|chr6:152407042-152407042|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8052368164062	2	540.824224	1079.63389	-0.39017	-0.00021101	-2.5715	-0.0013907	-2.9617	-0.0016017	540.8228498637535	52.773	0.15116	52.626	52.569	52.72	-0.14723					5	3	2	0	0	0	0.024257	1	5660	5660		58.23	5.2932	1	44488	+		32669	37667	22508	22550	37525	37525					0.09726291402739662
KLLEEQGIFL	10	Unmodified	_KLLEEQGIFL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	595.3446044921875	2	595.344989	1188.67542	-0.91104	-0.00054238	0.76267	0.00045405	-0.14837	-8.8329E-05	595.345334568167	71.655	1.4431	71.655	71.339	72.782	0					104	36	5	0	0	0	0.013215	2	8681	8681;8717		168.26	21.473	1	5523400			32670	4246	22509	22551	37526;37527	37526					0.08863427371420585
KLLEEQGIFL	10	Unmodified	_KLLEEQGIFL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	595.344970703125	2	595.344989	1188.67542	-0.25103	-0.00014945	0.11726	6.9809E-05	-0.13377	-7.9641E-05	595.3449370752081	72.056	1.7593	71.768	71.427	73.186	-0.28858					111	44	5	0	0	0	0.069016	2	8708	8697;8708		143.37	17.131	1	5120600			32671	4246	22509	22551	37528;37529	37529					0.08863427371420585
KLLEEQGIFL	10	Unmodified	_KLLEEQGIFL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	595.3450927734375	2	595.344989	1188.67542	0.07403	4.4073E-05	-0.3181	-0.00018938	-0.24407	-0.00014531	595.344671794927	71.772	1.7117	71.782	71.433	73.145	0.0097733					99	43	4	0	0	0	0.029455	3	8643	8621;8631;8643		155.58	54.125	1	6523700			32672	4246	22509	22551	37530;37531;37532	37532					0.08863427371420585
KLLEEQGIFL	10	Unmodified	_KLLEEQGIFL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.3446044921875	2	595.344989	1188.67542	-0.314	-0.00018694	0.1835	0.00010925	-0.1305	-7.7694E-05	595.3449545410274	71.981	0.89043	71.706	71.394	72.284	-0.27509					55	21	4	0	0	0	0.055122	1	8412	8412		146.79	61.87	1	1224800			32673	4246	22509	22551	37533	37533					0.08863427371420585
KLLEEQGIFL	10	Unmodified	_KLLEEQGIFL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.3445434570312	2	595.344989	1188.67542	-0.3609	-0.00021486	0.27801	0.00016551	-0.082895	-4.9351E-05	595.3449907834084	71.896	0.81211	71.634	71.403	72.216	-0.26199					55	19	4	0	0	0	0.2497	2	8421	8421;8432		114.86	18.193	1	1166800			32674	4246	22509	22551	37534;37535	37534					0.08863427371420585
KLLEEQGIFL	10	Unmodified	_KLLEEQGIFL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.3447875976562	2	595.344989	1188.67542	-0.19802	-0.00011789	0.18911	0.00011259	-0.00891	-5.3045E-06	595.3449734608148	71.762	0.93496	71.556	71.305	72.24	-0.20613					53	22	4	0	0	0	0.49336	2	8383	8383;8395		89.029	17.151	1	1436700			32675	4246	22509	22551	37536;37537	37536					0.08863427371420585
KLLEHALKEER	11	Unmodified	_KLLEHALKEER_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.8883972167969	3	455.933143	1364.7776	-0.076628	-3.4937E-05	2.8443	0.0012968	2.7677	0.0012619	455.9341052832247	37.768	0.40025	37.589	37.443	37.844	-0.17929					16	10	2	0	0	0	0.024811	1	3065	3065		72.096	1.684	1	72296			32676	7832	22510	22552	37538	37538					0.10980093443026817
KLLELEKHI	9	Unmodified	_KLLELEKHI_					0	0	0		ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-3|HSD17B7;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.845703125	2	561.847699	1121.68084	-0.014521	-8.1585E-06	-3.3451	-0.0018794	-3.3596	-0.0018876	561.8456417925604	95.287	1.1033	95.291	95.001	96.104	0.0033722					76	25	4	0	0	0	0.75397	1	12101	12101		42.396	1.618	1	1820900			32677	4581	22511	22553	37539	37539					0.12487150953893433
KLLELRTE	8	Unmodified	_KLLELRTE_					0	0	0		ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2742004394531	2	501.303124	1000.5917	0.013049	6.5417E-06	-0.095188	-4.7718E-05	-0.082139	-4.1176E-05	501.3027135152811	34.941	0.51981	34.726	34.467	34.987	-0.21555					26	12	3	0	0	0	0.027866	1	2603	2603		74.255	0	1	405760			32678	1140	22512	22554	37540	37540					0.09142315994381534
KLLEMLQEW	9	Unmodified	_KLLEMLQEW_					0	0	0		ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.2784423828125	2	595.317917	1188.62128	-1.1106	-0.00066114	-3.3184	-0.0019755	-4.429	-0.0026367	595.3159326389721	46.212	0.87409	46.01	45.598	46.472	-0.20226					30	23	2	0	0	0	0.024541	1	4409	4409		17.468	0	1	200570			32679	7448	22513	22555	37541	37541					0.03451511948219377
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8213500976562	2	519.352086	1036.68962	-0.82709	-0.00042955	-1.2325	-0.00064009	-2.0596	-0.0010696	519.3524620825772	81.293	3.8928	81.293	80.899	84.792	0					244	92	6	0	0	0	0.023239	1	10198	10198		84.916	8.1414	1	23349000			32680	2642	22514	22556	37542	37542					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.825439453125	2	519.352086	1036.68962	-0.51366	-0.00026677	-1.6469	-0.00085531	-2.1605	-0.0011221	519.3522999355376	81.45	3.3113	81.319	80.936	84.247	-0.13075					233	78	5	0	0	0	0.022587	1	10113	10113		84.916	0	1	25502000			32681	2642	22514	22556	37543	37543					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.3517456054688	2	519.352086	1036.68962	0.003313	1.7206E-06	-0.50824	-0.00026395	-0.50492	-0.00026223	519.3518132700362	81.243	1.2098	81.014	80.695	81.905	-0.2289					98	28	5	0	0	0	0.16468	1	9751	9751		96.19	13.885	1	5636000			32682	2642	22514	22556	37544	37544					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.3512573242188	2	519.352086	1036.68962	0.46067	0.00023925	-0.97793	-0.00050789	-0.51725	-0.00026864	519.3515398627528	81.25	1.2883	81.056	80.64	81.928	-0.19333					98	30	5	0	0	0	0.11092	2	9778	9766;9778		108.09	20.333	1	5138200			32683	2642	22514	22556	37545;37546	37546					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.3511352539062	2	519.352086	1036.68962	-0.22659	-0.00011768	-0.29662	-0.00015405	-0.52321	-0.00027173	519.351907443957	81.189	1.298	81.047	80.656	81.954	-0.14249					95	30	5	0	0	0	0.11092	1	9746	9746		108.09	25.782	1	5306300			32684	2642	22514	22556	37547	37547					0.1727412459038078
KLLEPVPVSV	10	Unmodified	_KLLEPVPVSV_					0	0	0		ENSG00000196704|ENST00000359904|AMZ2;ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF	ENSG00000196704|ENST00000359904|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8095092773438	2	540.8368	1079.65905	-0.48627	-0.00026299	-0.19907	-0.00010767	-0.68534	-0.00037066	540.8365432352018	64.037	0.54066	63.785	63.59	64.13	-0.25141					31	14	3	0	0	0	0.03519	1	7484	7484		51.193	11.94	1	802390			32685	9913	22515	22557	37548	37548					0.1224034620531711
KLLEQALVI	9	Unmodified	_KLLEQALVI_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000470531.5_3_17:7807732-7814900:+|nuORF;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000116254|ENST00000262450|CHD5	ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000116254|ENST00000262450|CHD5	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	513.831517	1025.64848	-0.29351	-0.00015081	-0.024575	-1.2627E-05	-0.31808	-0.00016344	513.8314423041779	67.309	1.0921	67.333	67.071	68.163	0.023911					77	27	4	0	0	0	0.40693	1	7955	7955		65.465	0	1	5611200			32686	3129;8003;3539	22516	22558	37549	37549					0.13668363550891627
KLLESEESRM	10	Unmodified	_KLLESEESRM_					0	0	0		CON__Q6IME9;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5	CON__Q6IME9;CON__Q8VED5	CON__Q8VED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3102416992188	2	611.31082	1220.60709	-0.92162	-0.0005634	0.67553	0.00041296	-0.24609	-0.00015044	611.3110784260493	47.199	1.7713	47.199	46.199	47.971	0					111	50	4	0	0	0	0.34816	3	4709	4709;4720;4732		104.01	16.321	1	4120400		+	32687	568;560	22517	22559	37550;37551;37552	37550					0.005608147292377907
KLLESEESRM	10	Unmodified	_KLLESEESRM_					0	0	0		CON__Q6IME9;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5	CON__Q6IME9;CON__Q8VED5	CON__Q8VED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3104858398438	2	611.31082	1220.60709	-1.5982	-0.00097699	1.1625	0.00071064	-0.43571	-0.00026635	611.31142711844	47.145	1.5227	47.204	46.247	47.769	0.059097					108	43	5	0	0	0	0.54901	1	4651	4651		82.75	2.2959	1	3697800		+	32688	568;560	22517	22559	37553	37553					0.005608147292377907
KLLESEESRM	10	Oxidation (M)	_KLLESEESRM(Oxidation (M))_		KLLESEESRM(1)		KLLESEESRM(120)	0	0	1		CON__Q6IME9;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5	CON__Q6IME9;CON__Q8VED5	CON__Q8VED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.3082885742188	2	619.308277	1236.602	-0.84924	-0.00052594	0.66349	0.00041091	-0.18575	-0.00011504	619.3085766857085	48.089	2.2536	48.089	46.852	49.106	0					174	65	4	0	0	0	0.19121	1	4864	4864		122.18	6.6819	1	6876400		+	32689	568;560	22517	22560	37554	37554		14			-0.006834891333710402
KLLESEESRM	10	Oxidation (M)	_KLLESEESRM(Oxidation (M))_		KLLESEESRM(1)		KLLESEESRM(120)	0	0	1		CON__Q6IME9;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5	CON__Q6IME9;CON__Q8VED5	CON__Q8VED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.3080444335938	2	619.308277	1236.602	-0.39592	-0.0002452	0.054737	3.3899E-05	-0.34118	-0.0002113	619.3081918629942	48.227	2.7448	48.074	46.698	49.443	-0.15301					197	77	5	0	0	0	0.19121	3	4864	4853;4864;4887		122.18	9.7651	1	7564100		+	32690	568;560	22517	22560	37555;37556;37557	37556		14			-0.006834891333710402
KLLESEESRM	10	Oxidation (M)	_KLLESEESRM(Oxidation (M))_		KLLESEESRM(1)		KLLESEESRM(110)	0	0	1		CON__Q6IME9;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5	CON__Q6IME9;CON__Q8VED5	CON__Q8VED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.3076782226562	2	619.308277	1236.602	-1.2896	-0.00079867	1.1072	0.00068572	-0.18238	-0.00011295	619.3088183493469	47.885	2.4978	47.952	46.737	49.234	0.066666					183	70	4	0	0	0	0.28861	1	4813	4813		110.12	6.0631	1	6973100		+	32691	568;560	22517	22560	37558	37558		14			-0.006834891333710402
KLLESRYHQI	10	Unmodified	_KLLESRYHQI_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.26318359375	3	429.5787	1285.71427	0.28075	0.00012061	0.14297	6.1417E-05	0.42372	0.00018202	429.57779748560347	41.973	0.3546	41.742	41.544	41.899	-0.23029					20	9	3	0	0	0	0.03519	1	3696	3696		26.063	5.2262	1	104690			32692	6300	22518	22561	37559	37559					0.0828415272580969
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3264770507812	2	528.326599	1054.63865	-0.18479	-9.7631E-05	-0.25048	-0.00013234	-0.43527	-0.00022997	528.3263591515353	66.006	1.2828	66.006	65.643	66.926	0					76	36	5	0	0	0	0.24941	3	7837	7837;7847;7859		114.89	24.525	1	8288100			32693	9007	22519	22562	37560;37561;37562	37560					0.11351175545519254
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3272094726562	2	528.326599	1054.63865	-0.48904	-0.00025837	-0.087413	-4.6183E-05	-0.57645	-0.00030455	528.3264120919401	66.38	0.69286	66.098	65.788	66.481	-0.28149					62	21	5	0	0	0	0.1169	4	7860	7850;7860;7872;7885		131.62	35.801	1	7238700			32694	9007	22519	22562	37563;37564;37565;37566	37564					0.11351175545519254
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3265380859375	2	528.326599	1054.63865	-0.12806	-6.7658E-05	-0.69507	-0.00036722	-0.82313	-0.00043488	528.326114244234	66.032	1.1741	66.062	65.774	66.948	0.030098					72	32	5	0	0	0	0.39693	2	7764	7755;7764		99.013	16.772	1	12478000			32695	9007	22519	22562	37567;37568	37568					0.11351175545519254
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.326599	1054.63865	-0.39888	-0.00021074	0.63103	0.00033339	0.23215	0.00012265	528.3266174726567	66.305	0.47256	66.064	65.828	66.301	-0.24144	-0.0089833	0.00065796	NaN	131.62	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228560			32696	9007	22519	22562							0.11351175545519254
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.326599	1054.63865	-0.88524	-0.00046769	0.79626	0.00042069	-0.088976	-4.7008E-05	528.3268896094518	66.346	0.47191	66.132	65.834	66.306	-0.21327	0.059668	0.00083255	NaN	131.62	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241580			32697	9007	22519	22562							0.11351175545519254
KLLEVNGVAL	10	Unmodified	_KLLEVNGVAL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.326599	1054.63865	-0.39323	-0.00020775	0.72886	0.00038508	0.33563	0.00017732	528.326846990958	66.318	0.54272	66.073	65.772	66.315	-0.24517	0.00039862	0.00076133	NaN	131.62	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250410			32698	9007	22519	22562							0.11351175545519254
KLLEVQPQV	9	Unmodified	_KLLEVQPQV_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7695922851562	2	527.318774	1052.623	-0.76931	-0.00040567	0.55257	0.00029138	-0.21674	-0.00011429	527.3190540437955	53.46	0.8167	53.46	53.16	53.976	0					64	22	5	0	0	0	0.019184	1	5771	5771		104.01	16.317	1	7113400			32699	3455	22520	22563	37569	37569					0.09878889028482263
KLLEVQPQV	9	Unmodified	_KLLEVQPQV_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7694702148438	2	527.318774	1052.623	-1.0329	-0.00054466	0.69084	0.00036429	-0.34206	-0.00018037	527.3192007735726	53.508	0.86164	53.36	53.06	53.921	-0.14723					61	23	4	0	0	0	0.022734	1	5768	5768		104.01	35.227	1	5558800			32700	3455	22520	22563	37570	37570					0.09878889028482263
KLLEVQPQV	9	Unmodified	_KLLEVQPQV_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7699584960938	2	527.318774	1052.623	-0.43026	-0.00022689	0.037871	1.997E-05	-0.39239	-0.00020692	527.3188035250787	53.305	1.4349	53.401	53.054	54.489	0.095669					81	40	5	0	0	0	0.022029	1	5693	5693		98.582	18.869	1	5385400			32701	3455	22520	22563	37571	37571					0.09878889028482263
KLLEVQPQV	9	Unmodified	_KLLEVQPQV_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.318774	1052.623	-0.32713	-0.0001725	0.10104	5.3281E-05	-0.22608	-0.00011922	527.3189063789812	53.664	0.39603	53.419	53.163	53.559	-0.2453	0.034954	-0.00035949	NaN	104.01	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401770			32702	3455	22520	22563							0.09878889028482263
KLLEYIEEI	9	Unmodified	_KLLEYIEEI_					0	0	0		nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-2|HMMR	nc|ENSG00000072571|O75330-2|HMMR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3237915039062	2	575.323722	1148.63289	-0.20894	-0.00012021	0.65789	0.0003785	0.44895	0.00025829	575.3238356498092	73.705	0.52103	73.434	73.09	73.611	-0.27126					34	13	4	0	0	0	0.094442	1	8975	8975		112.41	2.291	1	1727300			32703	18076	22521	22564	37572	37572					0.06452032243191752
KLLFMKKN	8	Unmodified	_KLLFMKKN_					0	0	0		ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.251220703125	2	511.31498	1020.61541	0.028397	1.452E-05	0.19521	9.9812E-05	0.2236	0.00011433	511.31494932149803	47.359	0.97306	47.089	46.628	47.601	-0.26939					45	26	3	0	0	0	0.027866	1	4602	4602		42.474	0	1	425030			32704	17114	22522	22565	37573	37573					0.10592458227199586
KLLFSLYLIV	10	Unmodified	_KLLFSLYLIV_					0	0	0			REV__ENST00000588106.1_1_17:67246040-67246830:-|nuORF	REV__ENST00000588106.1_1_17:67246040-67246830:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.59283447265625	3	403.593287	1207.75803	-0.0046254	-1.8668E-06	-2.2884	-0.00092358	-2.293	-0.00092545	403.5923711949745	38.108	1.3027	37.929	37.443	38.746	-0.17929					97	31	5	0	0	0	1.1211	1	3120	3120		21.686	0	1	10622000	+		32705	35643	22523	22566	37574	37574					0.16246369170221442
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.3135375976562	2	512.313492	1022.61243	-0.6812	-0.00034899	0.28944	0.00014828	-0.39177	-0.00020071	512.3135231817291	50.429	1.2382	50.429	50.084	51.323	0					77	35	3	0	0	0	0.03849	3	5284	5270;5284;5297		134.81	24.616	1	7863800			32706	1642	22524	22567	37575;37576;37577	37576					0.10202906374036047
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.3139038085938	2	512.313492	1022.61243	-0.13734	-7.0362E-05	-0.1054	-5.3997E-05	-0.24274	-0.00012436	512.3133027867746	50.641	1.3075	50.492	50.132	51.439	-0.14916					89	37	3	0	0	0	0.021872	3	5288	5279;5288;5302		148.04	31.139	1	8578500			32707	1642	22524	22567	37578;37579;37580	37579					0.10202906374036047
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.3135986328125	2	512.313492	1022.61243	-0.20344	-0.00010423	-0.042584	-2.1816E-05	-0.24603	-0.00012604	512.3133503740762	50.28	1.2104	50.361	50.085	51.296	0.080994					96	34	3	0	0	0	0.03849	3	5180	5180;5190;5203		134.81	28.832	1	8624700			32708	1642	22524	22567	37581;37582;37583	37581					0.10202906374036047
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.313492	1022.61243	0.080036	4.1003E-05	-0.19563	-0.00010022	-0.11559	-5.9218E-05	512.3132336647592	50.392	0.55815	50.286	50.011	50.569	-0.10558	-0.083517	-0.00018295	NaN	148.04	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146400			32709	1642	22524	22567							0.10202906374036047
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.313492	1022.61243	0.085738	4.3925E-05	-0.163	-8.3507E-05	-0.077261	-3.9582E-05	512.3132341447252	50.633	1.6518	50.354	49.123	50.775	-0.27939	-0.015567	-0.00014952	NaN	148.04	59	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	917380			32710	1642	22524	22567							0.10202906374036047
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.313492	1022.61243	0.23699	0.00012141	-0.41946	-0.00021489	-0.18247	-9.3481E-05	512.3131172079759	50.476	0.742	50.295	50.055	50.797	-0.18071	-0.074556	-0.00041229	NaN	148.04	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	986800			32711	1642	22524	22567							0.10202906374036047
KLLGQQKAI	9	Unmodified	_KLLGQQKAI_					0	0	0			REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	499.821484	997.628415	1.025	0.00051231	-1.185	-0.00059226	-0.15997	-7.9958E-05	499.82075985654245	19.341	0.52485	19.341	19.119	19.644	0					25	10	4	0	0	0	0.70186	1	410	410		45.952	7.1458	1	333230	+		32712	20246	22525	22568	37584	37584					0.12950612610927692
KLLGSLDEVLL	11	Unmodified	_KLLGSLDEVLL_					0	0	0		ENST00000426186.1_3_2:87121966-87144635:+|nuORF	ENST00000426186.1_3_2:87121966-87144635:+|nuORF	ENST00000426186.1_3_2:87121966-87144635:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.9150085449219	3	400.579706	1198.71729	0.70334	0.00028175	1.309	0.00052434	2.0123	0.00080609	400.5801374909674	110.7	0.47864	110.58	110.51	110.99	-0.12525					42	17	3	0	0	0	1.0739	1	13610	13610		18.531	0.69791	1	1160800			32713	14082	22526	22569	37585	37585					0.1258798305993878
KLLGYDVHV	9	Unmodified	_KLLGYDVHV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.297119140625	2	522.297842	1042.58113	0.054054	2.8232E-05	0.060025	3.1351E-05	0.11408	5.9583E-05	522.2977324409828	52.717	0.60871	52.809	52.404	53.013	0.091938					24	15	2	0	0	0	0.021872	1	5582	5582		148.04	60.289	1	2684300			32714	15509	22527	22570	37586	37586					0.061543333399413314
KLLGYDVHV	9	Unmodified	_KLLGYDVHV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.297842	1042.58113	0.69946	0.00036533	-1.9031	-0.00099399	-1.2036	-0.00062866	522.2965212043723	53.099	0.23882	52.84	52.683	52.922	-0.25838	0.022058	-0.0021425	NaN	148.04	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280680			32715	15509	22527	22570							0.061543333399413314
KLLHFFIN	8	Unmodified	_KLLHFFIN_					0	0	0			REV__ENSG00000162851|ENST00000366514|TFB2M	REV__ENSG00000162851|ENST00000366514|TFB2M	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2742919921875	2	516.30547	1030.59639	-0.98657	-0.00050937	-3.5795	-0.0018481	-4.5661	-0.0023575	516.3032693223219	44.731	0.69682	44.731	44.417	45.114	0					38	19	2	0	0	0	0.027866	1	4358	4358		31.955	7.7521	1	1214800	+		32716	25496	22528	22571	37587	37587					0.08231244927810621
KLLHFFIN	8	Unmodified	_KLLHFFIN_					0	0	0			REV__ENSG00000162851|ENST00000366514|TFB2M	REV__ENSG00000162851|ENST00000366514|TFB2M	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2741088867188	2	516.30547	1030.59639	-0.74718	-0.00038577	-3.7956	-0.0019597	-4.5428	-0.0023454	516.3032407803304	44.821	0.69758	44.857	44.509	45.207	0.0369					35	19	2	0	0	0	0.027866	1	4301	4301		30.504	0	1	1288900	+		32717	25496	22528	22571	37588	37588					0.08231244927810621
KLLHFFIN	8	Unmodified	_KLLHFFIN_					0	0	0			REV__ENSG00000162851|ENST00000366514|TFB2M	REV__ENSG00000162851|ENST00000366514|TFB2M	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2741088867188	2	516.30547	1030.59639	-0.70666	-0.00036485	3.3858	0.0017481	2.6791	0.0013832	516.307303230666	45.252	0.20067	45.295	45.11	45.311	0.043877					7	5	2	0	0	0	0.027866	1	4301	4301		30.504	3.7075	1	150890	+		32718	25496	22528	22571	37589	37589					0.08231244927810621
KLLHLGKT	8	Unmodified	_KLLHLGKT_					0	0	0		ENSG00000181609|ENST00000322641|OR52D1	ENSG00000181609|ENST00000322641|OR52D1	ENSG00000181609|ENST00000322641|OR52D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7590637207031	2	455.297645	908.580737	1.7974	0.00081836	-2.0733	-0.00094399	-0.27592	-0.00012563	455.2965437394805	23.457	0.67389	23.266	22.942	23.616	-0.19117					24	15	2	0	0	0	0.027866	1	894	894		12.959	0.75233	1	228680			32719	9051	22529	22572	37590	37590					0.1227895841074087
KLLIDRLE	8	Unmodified	_KLLIDRLE_					0	0	0			REV__nc|ENSG00000129353|Q8IWA5-2|SLC44A2	REV__nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	500.313492	998.612431	0.54696	0.00027365	-0.39323	-0.00019674	0.15373	7.6915E-05	500.3132083917949	19.593	0.51416	19.593	19.317	19.831	0					16	10	2	0	0	0	0.027866	1	410	410		45.952	18.07	1	47622	+		32720	36651	22530	22573	37591	37591					0.11306906374045411
KLLIVGSVGI	10	Unmodified	_KLLIVGSVGI_					0	0	0		nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.9025573730469	2	499.83406	997.653567	-0.75642	-0.00037808	-0.59024	-0.00029502	-1.3467	-0.0006731	499.83361985258813	43.666	0.72152	43.666	43.367	44.089	0					57	19	4	0	0	0	0.03519	1	4123	4123		35.618	0	1	2079500			32721	18261	22531	22574	37592	37592					0.15464667413527877
KLLIVGSVGI	10	Unmodified	_KLLIVGSVGI_					0	0	0		nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.90167236328125	2	499.83406	997.653567	0.023461	1.1727E-05	-1.2682	-0.00063387	-1.2447	-0.00062215	499.83328749487185	43.752	0.61415	43.783	43.522	44.136	0.030823					42	16	4	0	0	0	0.03519	1	4060	4060		14.865	0	1	2235800			32722	18261	22531	22574	37593	37593					0.15464667413527877
KLLKKLMR	8	Unmodified	_KLLKKLMR_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2823486328125	2	515.351897	1028.68924	-0.63627	-0.0003279	2.9434	0.0015169	2.3071	0.001189	515.3534056061535	65.553	0.30544	65.28	65.09	65.396	-0.27282					14	8	2	0	0	0	0.027866	1	7715	7715		26.796	1.3459	1	461430			32723	2818	22532	22575	37594	37594					0.17604426389516448
KLLKLYNDI	9	Unmodified	_KLLKLYNDI_					0	0	0			REV__ENSG00000172179|ENST00000306482|PRL	REV__ENSG00000172179|ENST00000306482|PRL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.34033203125	2	560.342249	1118.66995	0.14489	8.1187E-05	-3.9654	-0.002222	-3.8205	-0.0021408	560.3398724189238	101.17	1.8281	101.17	100.81	102.63	-0.0054474					131	41	5	0	0	0	0.72875	1	12956	12956		44.117	3.5442	1	15569000	+		32724	26643	22533	22576	37595	37595					0.11535748579603933
KLLKLYNDI	9	Unmodified	_KLLKLYNDI_					0	0	0			REV__ENSG00000172179|ENST00000306482|PRL	REV__ENSG00000172179|ENST00000306482|PRL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3392333984375	2	560.342249	1118.66995	-0.071418	-4.0019E-05	-3.7355	-0.0020932	-3.8069	-0.0021332	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	0.92825	1	12676	12676		30.504	1.3541	1	13448000	+		32725	26643	22533	22576	37596	37596					0.11535748579603933
KLLKYDHL	8	Unmodified	_KLLKYDHL_					0	0	0			REV__ENSG00000171223|ENST00000302754|JUNB	REV__ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2818603515625	2	515.30821	1028.60187	-0.94667	-0.00048783	1.6128	0.00083111	0.66618	0.00034329	515.3088623413346	64.953	0.80472	64.99	64.517	65.321	0.037376					48	21	3	0	0	0	0.027866	1	7625	7625		40.573	17.53	1	639040	+		32726	26555	22534	22577	37597	37597					0.08870923719587154
KLLLAAHAI	9	Unmodified	_KLLLAAHAI_					0	0	0		ENST00000494591.1_1_4:144346351-144346597:+|nuORF	ENST00000494591.1_1_4:144346351-144346597:+|nuORF	ENST00000494591.1_1_4:144346351-144346597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2904968261719	2	475.313295	948.612037	2.1223	0.0010088	-2.2076	-0.0010493	-0.085258	-4.0524E-05	475.31216210158595	19.038	0.54381	18.805	18.582	19.126	-0.23345					22	10	3	0	0	0	0.024357	1	336	336		35.201	2.3883	1	74255			32727	15532	22535	22578	37598	37598					0.1356753144484628
KLLLASEGR	9	Unmodified	_KLLLASEGR_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7661437988281	2	493.803291	985.59203	-0.14126	-6.9755E-05	-0.78783	-0.00038903	-0.92909	-0.00045879	493.8028826233631	40.801	0.63701	40.576	40.331	40.968	-0.22581					28	16	2	0	0	0	0.024511	1	3583	3583		8.6937	0	1	552450			32728	1292	22536	22579	37599	37599					0.09865735714242874
KLLLHYSL	8	Unmodified	_KLLLHYSL_					0	0	0			REV__ENST00000605778.1_1_7:35738158-35738266:+|nuORF	REV__ENST00000605778.1_1_7:35738158-35738266:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7876892089844	2	493.805303	985.596052	-0.47159	-0.00023287	1.3994	0.00069102	0.92778	0.00045814	493.8056232954732	65.139	1.0665	65.139	64.654	65.721	0					63	29	3	0	0	0	0.027866	1	7641	7641		18.324	0	1	2826900	+		32729	35922	22537	22580	37600	37600					0.10267825207927217
KLLLITSTT	9	Unmodified	_KLLLITSTT_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7399597167969	2	495.3157	988.616847	-0.78413	-0.00038839	1.6217	0.00080323	0.83752	0.00041484	495.3163302319618	53.512	0.35632	53.375	53.208	53.564	-0.13617					13	9	3	0	0	0	0.024495	1	5603	5603		26.693	0	1	209630			32730	3831	22538	22581	37601	37601					0.12208370796929557
KLLLITSTT	9	Unmodified	_KLLLITSTT_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.3157	988.616847	0.36842	0.00018248	-0.049988	-2.476E-05	0.31843	0.00015772	495.31565930077517	53.625	0.28953	53.625	53.509	53.799	0	0.10485	-0.00099374	NaN	19.997	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94657			32731	3831	22538	22581							0.12208370796929557
KLLLITSTT	9	Unmodified	_KLLLITSTT_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.3157	988.616847	-0.51045	-0.00025283	0.6451	0.00031953	0.13465	6.6694E-05	495.3158879422536	53.719	0.40217	53.572	53.346	53.748	-0.14723	0.052028	-0.00030517	NaN	19.997	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122540			32732	3831	22538	22581							0.12208370796929557
KLLLITSTT	9	Unmodified	_KLLLITSTT_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.3157	988.616847	-0.60222	-0.00029829	0.40614	0.00020117	-0.19608	-9.7121E-05	495.3155790660959	53.527	0.32848	53.623	53.336	53.664	0.095669	0.10279	-0.00054189	NaN	19.997	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94455			32733	3831	22538	22581							0.12208370796929557
KLLLLPPPSA	10	Unmodified	_KLLLLPPPSA_					0	0	0		ENSG00000161542|ENST00000446526|PRPSAP1	ENSG00000161542|ENST00000446526|PRPSAP1	ENSG00000161542|ENST00000446526|PRPSAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.8267211914062	2	524.841885	1047.66922	-0.70121	-0.00036802	2.744	0.0014401	2.0427	0.0010721	524.8430439143755	97.914	0.21234	97.914	97.727	97.94	0					10	4	3	0	0	0	0.03519	1	12488	12488		42.396	10.441	1	66868			32734	6878	22539	22582	37602	37602					0.1472895393055751
KLLLPGWDL	9	Unmodified	_KLLLPGWDL_					0	0	0		ENST00000583784.1_1_17:80007881-80008457:-|nuORF;ENST00000580953.5_1_17:80007881-80009420:-|nuORF	ENST00000583784.1_1_17:80007881-80008457:-|nuORF	ENST00000583784.1_1_17:80007881-80008457:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.8155517578125	2	527.81841	1053.62227	-1.5048	-0.00079426	-4.228	-0.0022316	-5.7328	-0.0030259	527.8160561223148	62.597	0.80382	62.358	62.144	62.947	-0.23926					43	22	2	0	0	0	0.15029	1	7250	7250		99.375	0.74558	1	3869900			32735	17156	22540	22583	37603	37603					0.09760094379407747
KLLLRGAW	8	Unmodified	_KLLLRGAW_					0	0	0		ENST00000487977.1_1_1:207990694-207995609:-|nuORF	ENST00000487977.1_1_1:207990694-207995609:-|nuORF	ENST00000487977.1_1_1:207990694-207995609:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.8002014160156	2	478.805637	955.596721	-0.56378	-0.00026994	-3.6261	-0.0017362	-4.1899	-0.0020061	478.8037980260261	22.222	0.42437	22.036	21.811	22.236	-0.18539					14	8	2	0	0	0	0.027866	1	767	767		20.482	1.1219	1	63628			32736	15381	22541	22584	37604	37604					0.11714664647649897
KLLLWQILW	9	Unmodified	_KLLLWQILW_					0	0	0			REV__ENSG00000198964|ENST00000361781|SGMS1	REV__ENSG00000198964|ENST00000361781|SGMS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.92291259765625	3	404.921627	1211.74305	-0.9926	-0.00040192	3.2289	0.0013075	2.2363	0.00090554	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	0.91321	1	1427	1427		31.53	11.215	1	42819000	+		32737	28532	22542	22585	37605	37605					0.14564922092881716
KLLLWVGL	8	Unmodified	_KLLLWVGL_					0	0	0		ENSG00000085465|ENST00000369732|OVGP1	ENSG00000085465|ENST00000369732|OVGP1	ENSG00000085465|ENST00000369732|OVGP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.3127136230469	2	471.312764	940.610974	-0.57773	-0.00027229	0.62931	0.0002966	0.051586	2.4313E-05	471.312565337874	44.593	2.5432	44.349	43.556	46.099	-0.2444					147	68	3	0	0	0	0.027866	1	4239	4239		28.254	0	1	1165300			32738	1791	22543	22586	37606	37606					0.13829317075942527
KLLLYRTRKQW	11	Unmodified	_KLLLYRTRKQW_					0	0	0		ENST00000474925.2_1_9:72356652-72374854:-|nuORF;ENSG00000188647|ENST00000340434|PTAR1	ENST00000474925.2_1_9:72356652-72374854:-|nuORF	ENST00000474925.2_1_9:72356652-72374854:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.294677734375	3	502.308544	1503.9038	-0.064258	-3.2277E-05	-2.9219	-0.0014677	-2.9861	-0.0014999	502.30854186833096	102.46	0.48941	102.29	101.93	102.42	-0.17178					17	11	2	0	0	0	0.02486	1	12678	12678		5.4129	0	1	26443			32739	9735	22544	22587	37607	37607					0.17200644738954907
KLLMNLLPS	9	Unmodified	_KLLMNLLPS_					0	0	0		ENST00000411832.5_1_7:72952271-72957931:-|nuORF	ENST00000411832.5_1_7:72952271-72957931:-|nuORF	ENST00000411832.5_1_7:72952271-72957931:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.2982788085938	2	514.81227	1027.60999	-1.1639	-0.0005992	3.2866	0.001692	2.1227	0.0010928	514.8140906070755	34.623	0.65179	34.673	34.404	35.056	0.050255					48	16	5	0	0	0	0.024263	1	2596	2596		42.396	0	1	441510			32740	13809	22545	22588	37608	37608					0.0972873464472741
KLLMQFYNR	9	Unmodified	_KLLMQFYNR_					0	0	0			REV__ENST00000475229.2_1_1:1663720-1663897:-|nuORF	REV__ENST00000475229.2_1_1:1663720-1663897:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5599365234375	3	404.890109	1211.6485	0.43029	0.00017422	-0.82274	-0.00033312	-0.39245	-0.0001589	404.88958174095455	33.702	0.80253	33.502	33.286	34.088	-0.20019					44	20	3	0	0	0	0.024515	1	2406	2406		21.686	0	1	213130	+		32741	33289	22546	22589	37609	37609					0.05114040279249821
KLLMTPRA	8	Unmodified	_KLLMTPRA_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000434096.1_1_2:58688403-58689123:-|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8932189941406	2	465.28368	928.552807	-0.7553	-0.00035143	2.0517	0.00095461	1.2964	0.00060318	465.2847943084876	29.887	0.29625	29.714	29.575	29.872	-0.17258					9	6	2	0	0	0	0.027866	1	1873	1873		30.504	7.4612	1	77229			32742	3264	22547	22590	37610	37610					0.08567312159004814
KLLNCVLIGLL	11	Unmodified	_KLLNCVLIGLL_					0	0	0			REV__ENSG00000054967|ENST00000064780|RELT	REV__ENSG00000054967|ENST00000064780|RELT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.88775634765625	3	400.25791	1197.7519	0.67864	0.00027163	-2.27	-0.0009086	-1.5914	-0.00063697	400.25699412294125	22.959	0.6447	22.768	22.479	23.124	-0.19117					25	13	3	0	0	0	0.024735	1	828	828		25.126	0	1	165440	+		32743	20196	22548	22591	37611	37611					0.16093527667067065
KLLNNIETEG	10	Unmodified	_KLLNNIETEG_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.806640625	2	565.806228	1129.5979	-0.33374	-0.00018883	1.009	0.00057088	0.67523	0.00038205	565.8067909053203	32.622	0.76284	32.464	32.163	32.926	-0.15772					33	18	2	0	0	0	1.089	1	2262	2262		34.173	0.25091	1	3514600	+		32744	36945	22549	22592	37612	37612					0.038287894352379226
KLLNNLEKQL	10	Unmodified	_KLLNNLEKQL_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.90655517578125	3	404.915201	1211.72377	1.0149	0.00041097	-0.98841	-0.00040022	0.026532	1.0743E-05	404.9148412520071	22.575	0.1897	22.648	22.51	22.7	0.073954					5	3	2	0	0	0	0.03519	1	757	757		39.873	1.1591	1	10964	+		32745	20838	22550	22593	37613	37613					0.12637921011310027
KLLNTHID	8	Unmodified	_KLLNTHID_					0	0	0		ENSG00000165325|ENST00000298050|DEUP1;nc|ENSG00000165325|Q05D60-2|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2561950683594	2	477.274367	952.53418	0.081327	3.8815E-05	-0.58788	-0.00028058	-0.50656	-0.00024177	477.2736652165674	41.792	0.53439	41.66	41.387	41.921	-0.13219					24	14	2	0	0	0	0.027866	1	3735	3735		71.296	18.359	1	337880			32746	7400	22551	22594	37614	37614					0.056014737887949195
KLLPDRFTV	9	Unmodified	_KLLPDRFTV_					0	0	0			REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8292846679688	2	544.826766	1087.63898	-0.90857	-0.00049501	1.0873	0.00059239	0.17872	9.7372E-05	544.8265986906064	74.884	0.75021	74.894	74.649	75.399	0.010368					39	18	3	0	0	0	0.024541	1	9068	9068		24.203	0	1	436720	+		32747	37168	22552	22595	37615	37615					0.09866595265361866
KLLPELDL	8	Unmodified	_KLLPELDL_					0	0	0			REV__nc|ENSG00000170581|P52630-4|STAT2	REV__nc|ENSG00000170581|P52630-4|STAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2959289550781	2	470.789318	939.564084	0.39079	0.00018398	-2.7451	-0.0012924	-2.3543	-0.0011084	470.78775168341207	18.899	0.64056	18.767	18.645	19.286	-0.13147					27	12	3	0	0	0	0.027866	1	325	325		23.042	0	1	204900	+		32748	26486	22553	22596	37616	37616					0.09188412734147278
KLLPETVTI	9	Unmodified	_KLLPETVTI_					0	0	0		ENSG00000108666|ENST00000577809|C17orf75;ENST00000580485.1_1_17:30665207-30669158:-|nuORF	ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.3153991699219	2	507.3157	1012.61685	-0.91872	-0.00046608	0.66747	0.00033862	-0.25126	-0.00012747	507.3157709175955	62.961	0.50972	62.961	62.651	63.161	0					33	12	4	0	0	0	0.027092	2	7334	7334;7345		143.89	26.983	1	3295200			32749	2922	22554	22597	37617;37618	37617					0.11104370796954299
KLLPETVTI	9	Unmodified	_KLLPETVTI_					0	0	0		ENSG00000108666|ENST00000577809|C17orf75;ENST00000580485.1_1_17:30665207-30669158:-|nuORF	ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.315185546875	2	507.3157	1012.61685	-0.40236	-0.00020412	0.39063	0.00019817	-0.011732	-5.9516E-06	507.3156060015903	63.214	0.40112	62.974	62.695	63.096	-0.23926					31	9	4	0	0	0	0.027092	2	7351	7340;7351		143.89	24.767	1	2754000			32750	2922	22554	22597	37619;37620	37620					0.11104370796954299
KLLPETVTI	9	Unmodified	_KLLPETVTI_					0	0	0		ENSG00000108666|ENST00000577809|C17orf75;ENST00000580485.1_1_17:30665207-30669158:-|nuORF	ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3152160644531	2	507.3157	1012.61685	0.65452	0.00033205	-0.7679	-0.00038957	-0.11338	-5.752E-05	507.3150581670622	62.941	0.48304	62.995	62.679	63.162	0.054104					34	11	4	0	0	0	0.027092	2	7260	7251;7260		143.89	30.989	1	3258100			32751	2922	22554	22597	37621;37622	37622					0.11104370796954299
KLLPEYPGV	9	Unmodified	_KLLPEYPGV_					0	0	0		nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR;ENSG00000178700|ENST00000314636|DHFR2	nc|ENSG00000228716|P00374-2|DHFR	nc|ENSG00000228716|P00374-2|DHFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2960205078125	2	508.294768	1014.57498	0.82405	0.00041886	-0.93084	-0.00047314	-0.10679	-5.428E-05	508.29414183707615	59.825	1.1004	59.825	59.482	60.582	0					66	29	3	0	0	0	0.42604	1	6862	6862		64.207	12.68	1	4396300			32752	8831	22555	22598	37623	37623					0.06827815108420054
KLLPHVPAPL	10	Unmodified	_KLLPHVPAPL_					0	0	0			REV__ENST00000514191.5_1_14:73404686-73407184:+|nuORF	REV__ENST00000514191.5_1_14:73404686-73407184:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3377075195312	2	542.847502	1083.68045	-0.53207	-0.00028883	-0.06869	-3.7288E-05	-0.60076	-0.00032612	542.8472143296538	48.94	0.63747	48.94	48.724	49.362	0					31	17	3	0	0	0	0.03519	1	4997	4997		31.955	9.995	1	441490	+		32753	34167	22556	22599	37624	37624					0.14195776024689621
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7656555175781	2	501.323328	1000.6321	-0.20788	-0.00010422	0.34754	0.00017423	0.13965	7.0011E-05	501.32336959272726	73.805	1.0789	73.534	73.277	74.356	-0.27126					39	26	3	0	0	0	0.024436	1	9061	9061		47.916	0	1	1731500			32754	7065	22557	22600	37625	37625					0.1318128238481222
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.323486328125	2	501.323328	1000.6321	-0.065507	-3.284E-05	-0.021074	-1.0565E-05	-0.086581	-4.3405E-05	501.3231625947504	73.75	0.55024	73.473	73.174	73.724	-0.2769					39	13	4	0	0	0	0.20304	3	8663	8663;8674;8684		88.643	10.699	1	2843400			32755	7065	22557	22600	37626;37627;37628	37626					0.1318128238481222
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3233947753906	2	501.323328	1000.6321	-0.34869	-0.00017481	0.35502	0.00017798	0.0063362	3.1765E-06	501.32333177654846	73.69	0.54869	73.425	73.099	73.647	-0.26479					45	13	4	0	0	0	0.22754	2	8673	8673;8695		85.359	10.949	1	2503400			32756	7065	22557	22600	37629;37630	37629					0.1318128238481222
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3233947753906	2	501.323328	1000.6321	-0.50319	-0.00025226	0.39829	0.00019967	-0.1049	-5.2587E-05	501.32336334555686	73.508	0.59623	73.318	73.047	73.643	-0.19026					43	14	4	0	0	0	0.20304	3	8646	8635;8646;8657		88.643	19.462	1	1956300			32757	7065	22557	22600	37631;37632;37633	37632					0.1318128238481222
KLLQAVAK	8	Unmodified	_KLLQAVAK_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7560729980469	2	435.792195	869.569838	1.5142	0.00065989	-2.3022	-0.0010033	-0.788	-0.00034341	435.79084089840137	63.74	0.58154	63.74	63.373	63.954	0					21	15	3	0	0	0	0.027866	1	7457	7457		23.042	0	1	153240			32758	7453	22558	22601	37634	37634					0.12983556036465416
KLLQCLHA	8	Unmodified	_KLLQCLHA_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2588195800781	2	463.26803	924.521507	0.6502	0.00030122	3.5997	0.0016676	4.2499	0.0019689	463.2694402206933	21.234	0.82261	21.306	20.91	21.732	0.071487					38	16	3	0	0	0	0.027866	1	596	596		19.36	0	1	198640			32759	6477	22559	22602	37635	37635					0.056227391249194625
KLLQDLHEA	9	Unmodified	_KLLQDLHEA_					0	0	0		ENST00000495794.5_1_5:864585-881375:-|nuORF;nc|ENSG00000028310|Q9H8M2-3|BRD9;nc|ENSG00000028310|Q9H8M2-1|BRD9;ENST00000495265.5_1_5:864585-889814:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9;ENSG00000028310|ENST00000467963|BRD9;ENST00000497410.5_1_5:864585-865736:-|nuORF;nc|ENSG00000028310|Q9H8M2-2|BRD9	ENST00000495794.5_1_5:864585-881375:-|nuORF	ENST00000495794.5_1_5:864585-881375:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2823486328125	2	533.798206	1065.58186	-0.85863	-0.00045833	-0.88682	-0.00047338	-1.7454	-0.00093172	533.7981728265738	38.957	0.63031	38.957	38.761	39.391	0					42	17	3	0	0	0	0.024313	1	3293	3293		51.193	8.3284	1	590440			32760	1004	22560	22603	37636	37636					0.05169127988983746
KLLQNVKAN	9	Unmodified	_KLLQNVKAN_					0	0	0			REV__ENSG00000168092|ENST00000527958|PAFAH1B2	REV__ENSG00000168092|ENST00000527958|PAFAH1B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.791015625	2	514.316566	1026.61858	-0.8824	-0.00045383	0.090679	4.6638E-05	-0.79172	-0.0004072	514.3163037916181	21.758	0.47453	21.758	21.491	21.965	0					13	9	2	0	0	0	0.024405	1	701	701		27.882	1.1893	1	26618	+		32761	26231	22561	22604	37637	37637					0.10633424605566688
KLLRIEGE	8	Unmodified	_KLLRIEGE_					0	0	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8970947265625	2	479.290017	956.565481	-0.21391	-0.00010252	0.30002	0.0001438	0.086113	4.1273E-05	479.28991195875057	31.887	0.78968	31.729	31.374	32.163	-0.15772					32	18	2	0	0	0	0.027866	1	2178	2178		16.473	0	1	724090	+		32762	28098	22562	22605	37638	37638					0.08546046822903008
KLLRKILK	8	Unmodified	_KLLRKILK_					0	0	0		PRMT7|p.F443L|1|0.1|ENSG00000132600|chr16:68348347-68348347|C/G|missense_variant	PRMT7|p.F443L|1|0.1|ENSG00000132600|chr16:68348347-68348347|C/G|missense_variant	PRMT7|p.F443L|1|0.1|ENSG00000132600|chr16:68348347-68348347|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7142028808594	2	506.373687	1010.73282	-0.34845	-0.00017645	0.48335	0.00024475	0.13489	6.8307E-05	506.8772941018834	34.194	0.2187	33.987	33.824	34.043	-0.20696					12	5	3	0	0	0	0.027866	1	2481	2481		12.207	0	1	84464			32763	18996	22563	22606	37639	37639					0.22788359158312232
KLLRLIDL	8	Unmodified	_KLLRLIDL_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7959289550781	2	492.334227	982.653902	-0.15892	-7.8242E-05	-0.086488	-4.2581E-05	-0.24541	-0.00012082	492.33393463587754	48.804	0.40108	48.622	48.408	48.809	-0.18206					12	10	2	0	0	0	0.027866	1	4855	4855		26.693	4.733	1	126150			32764	4220	22564	22607	37640	37640					0.1618808713337785
KLLRQDKKTVH	11	Unmodified	_KLLRQDKKTVH_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENST00000465961.1_1_3:136067979-136076626:-|nuORF	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.8883361816406	3	455.949016	1364.82522	-0.32559	-0.00014845	1.9746	0.00090031	1.649	0.00075186	455.94995698040094	37.691	0.10229	37.691	37.632	37.735	0					4	2	2	0	0	0	0.024789	1	3095	3095		58.63	21.03	1	81897			32765	18861	22565	22608	37641	37641					0.15739792433873845
KLLRQELLKYL	11	Unmodified	_KLLRQELLKYL_					0	0	0		ENSG00000179988|ENST00000406217|PSTK;nc|ENSG00000179988|Q8IV42-2|PSTK;nc|ENSG00000179988|Q8IV42|PSTK	ENSG00000179988|ENST00000406217|PSTK	ENSG00000179988|ENST00000406217|PSTK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2472229003906	3	472.969417	1415.88642	0.19541	9.2422E-05	3.335	0.0015774	3.5305	0.0016698	472.97096876899184	50.036	1.9302	50.117	49.847	51.777	0.08099					165	55	4	0	0	0	0.024801	1	5293	5293		23.378	10.42	1	1267400			32766	8952	22566	22609	37642	37642					0.1951130441332225
KLLRRRTAAK	10	Unmodified	_KLLRRRTAAK_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.923095703125	3	404.938562	1211.79386	0.50735	0.00020544	0.96067	0.00038901	1.468	0.00059445	404.9395850003037	26.45	0.34347	26.282	26.119	26.462	-0.16816					13	8	2	0	0	0	0.03519	1	1371	1371		10.104	4.9615	1	151560	+		32767	25591	22567	22610	37643	37643					0.19643264190426635
KLLRVVAR	8	Unmodified	_KLLRVVAR_					0	0	0		ENST00000585421.5_1_17:76851311-76851587:-|nuORF	ENST00000585421.5_1_17:76851311-76851587:-|nuORF	ENST00000585421.5_1_17:76851311-76851587:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7970886230469	2	477.832186	953.649819	1.1895	0.0005684	-2.05	-0.00097957	-0.86049	-0.00041117	477.8313284686911	96.375	0.24873	96.377	96.194	96.442	0.0020752					6	5	2	0	0	0	0.027866	1	12220	12220		13.775	0	1	17337			32768	17228	22568	22611	37644	37644					0.17114042430318932
KLLSHGAV	8	Unmodified	_KLLSHGAV_					0	0	0		ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant;ANKRD30A|p.F1133Lfs*7|1|0.19|ENSG00000148513|chr10:37219109-37219109|T/-|frameshift_variant;ENSG00000148513|ENST00000361713|ANKRD30A	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.742431640625	2	412.75307	823.491587	-0.42466	-0.00017528	0.35582	0.00014687	-0.068835	-2.8412E-05	412.7530848260294	37.852	0.82032	37.852	37.379	38.199	0					53	23	3	0	0	0	0.027866	1	3057	3057		13.775	1.5685	1	1675700			32769	93	22569	22612	37645	37645					0.07278123451237661
KLLSHGAV	8	Unmodified	_KLLSHGAV_					0	0	0		ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant;ANKRD30A|p.F1133Lfs*7|1|0.19|ENSG00000148513|chr10:37219109-37219109|T/-|frameshift_variant;ENSG00000148513|ENST00000361713|ANKRD30A	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	412.75307	823.491587	-0.60908	-0.0002514	0.68403	0.00028233	0.074944	3.0933E-05	412.7531894344138	37.777	0.86296	37.695	37.286	38.149	-0.082512	-0.15597	0.00012925	NaN	20.482	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335500			32770	93	22569	22612							0.07278123451237661
KLLSHGAV	8	Unmodified	_KLLSHGAV_					0	0	0		ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant;ANKRD30A|p.F1133Lfs*7|1|0.19|ENSG00000148513|chr10:37219109-37219109|T/-|frameshift_variant;ENSG00000148513|ENST00000361713|ANKRD30A	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	412.75307	823.491587	-0.81882	-0.00033797	0.6695	0.00027634	-0.14932	-6.1633E-05	412.75315320694006	37.978	1.0524	38.006	37.52	38.572	0.027275	0.1548	0.00011726	NaN	20.482	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1358100			32771	93	22569	22612							0.07278123451237661
KLLSKMYL	8	Unmodified	_KLLSKMYL_					0	0	0			REV__ENSG00000158669|ENST00000396987|GPAT4	REV__ENSG00000158669|ENST00000396987|GPAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.8006591796875	2	498.301539	994.588524	-0.16522	-8.2327E-05	4.3918	0.0021884	4.2266	0.0021061	498.30323145723565	30.992	0.73817	31.061	30.829	31.567	0.068962					23	17	2	0	0	0	0.027866	1	2027	2027		45.952	8.7928	1	206190	+		32772	25210	22570	22613	37646	37646					0.09101349616014431
KLLSLIDL	8	Unmodified	_KLLSLIDL_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.7396545410156	2	457.799686	913.584819	-0.40756	-0.00018658	1.4859	0.00068024	1.0783	0.00049366	457.8003862882436	28.375	0.36034	28.223	28	28.36	-0.15195					14	8	2	0	0	0	0.027866	1	1601	1601		16.473	0	1	564270	+		32773	36895	22571	22614	37647	37647					0.12457003113809151
KLLSLKLSH	9	Unmodified	_KLLSLKLSH_					0	0	0		ENSG00000092850|ENST00000207457|TEKT2	ENSG00000092850|ENST00000207457|TEKT2	ENSG00000092850|ENST00000207457|TEKT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8213500976562	2	519.837134	1037.65972	-0.81164	-0.00042192	-4.0105	-0.0020848	-4.8221	-0.0025067	520.3354206296714	81.72	0.20042	81.72	81.63	81.83	0					6	4	2	0	0	0	0.024344	1	10198	10198		37.812	0	1	114420			32774	1997	22572	22615	37648	37648					0.14239185645033103
KLLSPELEF	9	Unmodified	_KLLSPELEF_					0	0	0			REV__ENST00000367549.3_1_1:182852486-182852688:+|nuORF	REV__ENST00000367549.3_1_1:182852486-182852688:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7831420898438	2	538.305332	1074.59611	-0.16693	-8.9858E-05	0.79564	0.0004283	0.62872	0.00033844	538.3055794189315	50.316	0.33594	50.211	50.011	50.347	-0.10558					14	8	2	0	0	0	0.024427	1	5089	5089		34.173	1.3601	1	147660	+		32775	31025	22573	22616	37649	37649					0.06179780417301117
KLLSPLTEP	9	Unmodified	_KLLSPLTEP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.82672119140625	2	499.30005	996.585547	-0.40555	-0.00020249	-2.8264	-0.0014112	-3.2319	-0.0016137	499.29841089454607	22.268	0.57338	22.066	21.712	22.285	-0.20199					25	11	3	0	0	0	0.024205	1	729	729		44.117	0	1	182360	+		32776	22942	22574	22617	37650	37650					0.08711797762839524
KLLSSFVKMKT	11	Unmodified	_KLLSSFVKMKT_					0	0	0			REV__ENST00000418917.6_1_3:100467403-100467589:+|nuORF	REV__ENST00000418917.6_1_3:100467403-100467589:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.3843994140625	2	641.383591	1280.75263	-1.2106	-0.00077648	2.9824	0.0019129	1.7718	0.0011364	641.3853345182382	101.41	0.9041	101.28	100.86	101.76	-0.13157					55	19	4	0	0	0	1.0429	1	12570	12570		27.047	6.1004	1	899150	+		32777	32131	22575	22618	37651	37651					0.12348322316097438
KLLSSPLPP	9	Unmodified	_KLLSSPLPP_					0	0	0		ENST00000595753.5_1_19:16663592-16663826:-|nuORF	ENST00000595753.5_1_19:16663592-16663826:-|nuORF	ENST00000595753.5_1_19:16663592-16663826:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.28680419921875	2	476.29731	950.580068	0.11414	5.4364E-05	0.090503	4.3106E-05	0.20464	9.747E-05	476.29719450746154	54.322	2.7991	54.42	52.945	55.744	0.098015					133	78	2	0	0	0	0.024389	1	5839	5839		42.864	10.052	1	254060			32778	17423	22576	22619	37652	37652					0.10280118971036245
KLLSSYLQKKS	11	Unmodified	_KLLSSYLQKKS_					0	0	0		ENSG00000168393|ENST00000305784|DTYMK;ENST00000493095.1_1_2:242621724-242626123:-|nuORF;ENST00000464603.1_1_2:242625182-242626171:-|nuORF;nc|ENSG00000168393|P23919-2|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.24285888671875	3	432.262489	1293.76564	0.06632	2.8668E-05	-4.1779	-0.001806	-4.1116	-0.0017773	432.5960388384637	46.786	0.22754	46.837	46.721	46.949	0.051395					7	5	2	0	0	0	0.02477	1	4597	4597		12.433	0	1	190110			32779	7817	22577	22620	37653	37653					0.13050476699845603
KLLSWLGSI	9	Unmodified	_KLLSWLGSI_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.8090515136719	2	508.810585	1015.60662	-1.0057	-0.00051169	-3.8653	-0.0019667	-4.8709	-0.0024784	508.8088173438448	61.321	1.3972	61.145	60.833	62.23	-0.1761					66	34	4	0	0	0	0.53979	1	6874	6874		56.721	0	1	3414500			32780	981	22578	22621	37654	37654					0.09943807862362064
KLLTEHFLS	9	Unmodified	_KLLTEHFLS_					0	0	0		ENST00000482723.1_1_17:72439553-72445018:+|nuORF	ENST00000482723.1_1_17:72439553-72445018:+|nuORF	ENST00000482723.1_1_17:72439553-72445018:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8292846679688	2	544.310949	1086.60735	-0.85471	-0.00046523	3.767	0.0020504	2.9123	0.0015852	544.3127885488472	74.983	0.67702	74.994	74.649	75.326	0.010376					38	16	3	0	0	0	0.024523	1	9068	9068		29.15	0	1	450380			32781	15267	22579	22622	37655	37655					0.06750602511419856
KLLTESYQDRI	11	Unmodified	_KLLTESYQDRI_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.8883972167969	3	455.91727	1364.72998	-0.071196	-3.246E-05	1.8499	0.0008434	1.7787	0.00081094	455.91813385731336	37.802	0.33165	37.623	37.443	37.775	-0.17929					13	8	2	0	0	0	0.024818	1	3065	3065		60.167	0	1	76907	+		32782	24307	22580	22623	37656	37656					0.062203944521797894
KLLTEVHAA	9	Unmodified	_KLLTEVHAA_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2899475097656	2	491.290017	980.565481	-0.17129	-8.4155E-05	-0.0017538	-8.6164E-07	-0.17305	-8.5017E-05	491.28981487301576	34.217	1.0872	34.217	33.894	34.981	0					88	27	6	0	0	0	0.015925	2	2537	2526;2537		157.21	69.454	1	3924800			32783	6215	22581	22624	37657;37658	37658					0.07442046822882276
KLLTEVHAA	9	Unmodified	_KLLTEVHAA_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2900085449219	2	491.290017	980.565481	-0.066566	-3.2703E-05	-0.027127	-1.3327E-05	-0.093693	-4.603E-05	491.28977362014933	34.057	1.1685	34.052	33.79	34.958	-0.0045624					84	29	5	0	0	0	0.013333	2	2492	2492;2504		176.41	83.215	1	3815800			32784	6215	22581	22624	37659;37660	37659					0.07442046822882276
KLLTEVHAA	9	Unmodified	_KLLTEVHAA_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2900390625	2	491.290017	980.565481	-0.83875	-0.00041207	0.78361	0.00038498	-0.055144	-2.7092E-05	491.29018672074477	34.101	1.03	34.151	33.844	34.874	0.050255					89	25	5	0	0	0	0.013333	2	2460	2460;2472		176.41	77.036	1	3655900			32785	6215	22581	22624	37661;37662	37661					0.07442046822882276
KLLTEVHAA	9	Unmodified	_KLLTEVHAA_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.290017	980.565481	-0.52372	-0.0002573	0.64385	0.00031632	0.12013	5.902E-05	491.29023516277266	34.151	0.69894	33.927	33.68	34.379	-0.22412	-0.10658	0.00015041	NaN	176.41	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985840			32786	6215	22581	22624							0.07442046822882276
KLLTEVHAA	9	Unmodified	_KLLTEVHAA_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.290017	980.565481	-0.13277	-6.523E-05	0.62746	0.00030826	0.49468	0.00024303	491.29015025805495	34.139	0.97966	33.932	33.627	34.607	-0.20695	-0.10163	0.0001343	NaN	176.41	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	823220			32787	6215	22581	22624							0.07442046822882276
KLLTEVHAA	9	Unmodified	_KLLTEVHAA_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.290017	980.565481	-0.86659	-0.00042575	0.8548	0.00041996	-0.011789	-5.792E-06	491.29017700323686	34.098	0.63086	33.923	33.662	34.293	-0.17557	-0.11081	0.00035769	NaN	176.41	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	941400			32788	6215	22581	22624							0.07442046822882276
KLLTIDPLS	9	Unmodified	_KLLTIDPLS_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29052734375	2	500.307875	998.601197	-0.27408	-0.00013713	0.095041	4.755E-05	-0.17904	-8.9576E-05	500.3079489642586	88.125	0.43153	87.954	87.741	88.173	-0.17054					24	10	4	0	0	0	0.024466	1	10756	10756		39.253	3.6345	1	523830	+		32789	23114	22582	22625	37663	37663					0.10184084279887884
KLLTIDPLS	9	Unmodified	_KLLTIDPLS_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2901306152344	2	500.307875	998.601197	0.1789	8.9505E-05	-0.20835	-0.00010424	-0.029452	-1.4735E-05	500.3076638742335	88.114	0.50769	87.982	87.687	88.194	-0.13135					19	12	2	0	0	0	0.024374	1	10698	10698		58.782	25.97	1	126420	+		32790	23114	22582	22625	37664	37664					0.10184084279887884
KLLTYNSGDL	10	Unmodified	_KLLTYNSGDL_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.323486328125	2	562.303321	1122.59209	-0.67935	-0.000382	3.2179	0.0018094	2.5385	0.0014274	562.3053378973283	69.615	0.24666	69.348	69.247	69.493	-0.26725					8	5	2	0	0	0	0.03519	1	8072	8072		31.53	0	1	118150	+		32791	22693	22583	22626	37665	37665					0.035696909235639396
KLLTYNSGDL	10	Unmodified	_KLLTYNSGDL_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	562.303321	1122.59209	-0.44733	-0.00025154	9.2108	0.0051793	8.7635	0.0049277	562.3096090459875	69.296	0.20868	69.073	68.894	69.103	-0.22245	-0.073094	-0.00096364	NaN	31.53	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48616	+		32792	22693	22583	22626							0.035696909235639396
KLLVLDDKRV	10	Unmodified	_KLLVLDDKRV_					0	0	0			REV__ENST00000525579.5_1_9:102691086-102716280:+|nuORF	REV__ENST00000525579.5_1_9:102691086-102716280:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	400.255446	1197.74451	1.045	0.00041828	3.464	0.0013865	4.5091	0.0018048	400.2568136482801	22.771	0.65278	22.583	22.327	22.98	-0.18894					28	13	3	0	0	0	0.03519	1	854	854		31.634	1.0654	1	208950	+		32793	23696	22584	22627	37666	37666					0.15354511390978587
KLLWFKVPT	9	Unmodified	_KLLWFKVPT_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.8317260742188	2	566.349877	1130.6852	0.034908	1.977E-05	-4.0792	-0.0023103	-4.0443	-0.0022905	566.8492955238524	54.307	0.34512	54.062	53.92	54.265	-0.2453					18	10	2	0	0	0	0.024539	1	5723	5723		35.618	15.136	1	243630	+		32794	21318	22585	22628	37667	37667					0.1250866016746386
KLLWFKVPT	9	Unmodified	_KLLWFKVPT_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	566.349877	1130.6852	-0.74045	-0.00041935	-3.5098	-0.0019878	-4.2502	-0.0024071	566.3476433997295	54.206	0.2863	54.07	53.897	54.183	-0.13617	0.012266	0.00084748	NaN	74.255	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197580	+		32795	21318	22585	22628							0.1250866016746386
KLLWFKVPT	9	Unmodified	_KLLWFKVPT_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	566.349877	1130.6852	0.17477	9.8979E-05	-4.6703	-0.002645	-4.4955	-0.002546	566.3471375444217	54.239	0.38879	54.041	53.857	54.246	-0.19739	-0.016422	-0.000467	NaN	74.255	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301940	+		32796	21318	22585	22628							0.1250866016746386
KLLWHQVF	8	Unmodified	_KLLWHQVF_					0	0	0		ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2716064453125	2	535.810919	1069.60729	-0.54746	-0.00029333	-0.11908	-6.3805E-05	-0.66654	-0.00035714	535.8103698430078	103.96	0.64043	103.96	103.74	104.38	0					18	14	2	0	0	0	0.027866	1	13367	13367		1.3276	0	1	63070			32797	2324	22586	22629	37668	37668					0.07526647302074707
KLMDHIYAV	9	Unmodified	_KLMDHIYAV_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.290283203125	2	545.291702	1088.56885	-0.67113	-0.00036596	0.91062	0.00049656	0.2395	0.0001306	545.2919859229067	50.825	0.81854	50.825	50.577	51.395	0					47	22	4	0	0	0	0.047345	2	5349	5349;5367		129.68	78.347	1	5623100			32798	7296	22587	22630	37669;37670	37669					0.028109736052329026
KLMDHIYAV	9	Unmodified	_KLMDHIYAV_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.2896118164062	2	545.291702	1088.56885	-0.87136	-0.00047514	1.0595	0.00057772	0.18812	0.00010258	545.2920744685078	51.023	0.77561	50.874	50.594	51.369	-0.14916					45	21	4	0	0	0	0.16468	2	5357	5357;5367		96.19	40.686	1	4647500			32799	7296	22587	22630	37671;37672	37671					0.028109736052329026
KLMDHIYAV	9	Unmodified	_KLMDHIYAV_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.2894897460938	2	545.291702	1088.56885	-1.2178	-0.00066404	1.4377	0.00078394	0.21989	0.0001199	545.2922996252387	50.686	0.64019	50.767	50.543	51.183	0.08099					49	17	4	0	0	0	0.03849	3	5264	5264;5275;5287		134.81	74.517	1	4027000			32800	7296	22587	22630	37673;37674;37675	37673					0.028109736052329026
KLMDLDVEQL	10	Unmodified	_KLMDLDVEQL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	602.3189697265625	2	602.318114	1202.62167	-0.48094	-0.00028968	0.42067	0.00025338	-0.060275	-3.6305E-05	602.3181900916229	70.87	0.68829	70.87	70.613	71.301	0					47	16	4	0	0	0	0.0068679	1	8560	8560		174.86	25.878	1	2370500			32801	4632;13587	22588	22631	37676	37676					0.028468868774098155
KLMDLDVEQL	10	Unmodified	_KLMDLDVEQL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	602.3184814453125	2	602.318114	1202.62167	0.42477	0.00025584	-0.41601	-0.00025057	0.0087533	5.2722E-06	602.3176133694022	71.19	0.83157	70.902	70.633	71.464	-0.28858					52	20	4	0	0	0	0.0068679	2	8573	8573;8584		174.86	32.999	1	2970600			32802	4632;13587	22588	22631	37677;37678	37677					0.028468868774098155
KLMDLDVEQL	10	Unmodified	_KLMDLDVEQL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	602.3187255859375	2	602.318114	1202.62167	-1.2889	-0.00077633	1.2646	0.00076169	-0.024303	-1.4638E-05	602.3186769429675	70.983	0.8985	70.994	70.68	71.579	0.010735					61	22	4	0	0	0	0.02042	1	8502	8502		162.64	35.174	1	2795300			32803	4632;13587	22588	22631	37679	37679					0.028468868774098155
KLMDLDVEQL	10	Unmodified	_KLMDLDVEQL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	602.318114	1202.62167	-0.16839	-0.00010142	-0.55735	-0.0003357	-0.72574	-0.00043713	602.3177438190617	71.185	0.31245	70.913	70.746	71.059	-0.27185	0.0096155	-0.0011013	NaN	174.86	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210220			32804	4632;13587	22588	22631							0.028468868774098155
KLMDLDVEQL	10	Unmodified	_KLMDLDVEQL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA;ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	602.318114	1202.62167	-0.45029	-0.00027122	0.13802	8.3131E-05	-0.31227	-0.00018809	602.3178931577227	71.165	0.50955	70.907	70.695	71.205	-0.25712	0.0040362	-0.00026367	NaN	174.86	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233880			32805	4632;13587	22588	22631							0.028468868774098155
KLMDRWKKL	9	Unmodified	_KLMDRWKKL_					0	0	0		ENSG00000152578|ENST00000282499|GRIA4;nc|ENSG00000152578|P48058-2|GRIA4	ENSG00000152578|ENST00000282499|GRIA4	ENSG00000152578|ENST00000282499|GRIA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.5870056152344	3	406.577754	1216.71143	0.43623	0.00017736	-2.22	-0.00090261	-1.7838	-0.00072525	406.5769646909144	25.098	0.26295	24.926	24.691	24.954	-0.17132					4	2	2	0	0	0	0.024319	1	1139	1139		24.519	0	1	114430			32806	6281	22589	22632	37680	37680					0.1117460606728855
KLMELLEEI	9	Unmodified	_KLMELLEEI_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.26416015625	2	559.3123	1116.61005	-0.034535	-1.9316E-05	0.8352	0.00046714	0.80066	0.00044782	559.3121979444236	79.512	1.5172	79.362	78.432	79.949	-0.15051					65	35	3	0	0	0	0.023007	1	9580	9580		76.774	30.822	1	1248500			32807	8372	22590	22633	37681	37681					0.056406898540672046
KLMELQRTL	9	Unmodified	_KLMELQRTL_					0	0	0			REV__nc|ENSG00000143514|Q13625-2|TP53BP2	REV__nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.2916259765625	2	566.331359	1130.64816	-0.017861	-1.0115E-05	-3.3467	-0.0018953	-3.3645	-0.0019054	566.3293352649364	60.047	0.72963	60.047	59.779	60.509	0					46	19	4	0	0	0	0.024397	1	6874	6874		47.657	8.8512	1	1832600	+		32808	24257	22591	22634	37682	37682					0.088066205594032
KLMGLIDSP	9	Unmodified	_KLMGLIDSP_					0	0	0			REV__nc|ENSG00000078403|P55197-1|MLLT10	REV__nc|ENSG00000078403|P55197-1|MLLT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7608642578125	2	487.272978	972.531403	0.1525	7.431E-05	2.9708	0.0014476	3.1233	0.0015219	487.27416530315213	25.541	0.67283	25.37	24.993	25.666	-0.17151					31	15	3	0	0	0	0.024495	1	1193	1193		19.997	19	1	490400	+		32809	20611	22592	22635	37683	37683					0.044038823396363114
KLMICSHEGTL	11	Unmodified	_KLMICSHEGTL_					0	0	0			REV__ENSG00000135372|ENST00000257829|NAT10	REV__ENSG00000135372|ENST00000257829|NAT10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.212646484375	3	411.210631	1230.61006	0.27582	0.00011342	3.2882	0.0013521	3.564	0.0014656	411.2119483299425	47.124	0.93721	46.855	46.561	47.498	-0.26939					75	25	4	0	0	0	0.9703	1	4596	4596		43.419	2.6404	1	7981700	+		32810	23536	22593	22636	37684	37684					0.003983665824307536
KLMKPKQSL	9	Unmodified	_KLMKPKQSL_					0	0	0			REV__ENSG00000151849|ENST00000381884|CENPJ	REV__ENSG00000151849|ENST00000381884|CENPJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7848510742188	2	536.830995	1071.64744	-1.1813	-0.00063414	-2.7306	-0.0014659	-3.9119	-0.0021	536.8292794928698	53.218	0.66302	53.071	52.72	53.383	-0.14723					22	17	2	0	0	0	0.024405	1	5674	5674		44.117	0	1	191530	+		32811	24801	22594	22637	37685	37685					0.11447825910340725
KLMKQSSVR	9	Oxidation (M)	_KLM(Oxidation (M))KQSSVR_		KLM(1)KQSSVR		KLM(79)KQSSVR	0	0	1		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000559119.1_1_15:62146658-62148655:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MSMS	OPSCC_39_ClassI_Rep-3	3	546.8115234375	2	546.813333	1091.61211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.733	1	46.784	46.284	47.284	0.051395								0	0	0	0.15858	1	4582	4582		79.451	7.5735	1				32812	4326	22595	22638	37686	37686		173			0.06997163382516192
KLMKWMIL	8	Unmodified	_KLMKWMIL_					0	0	0			REV__ENST00000602629.1_1_2:171073857-171238605:+|nuORF	REV__ENST00000602629.1_1_2:171073857-171238605:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.795654296875	2	531.813759	1061.61296	0.68447	0.00036401	1.5245	0.00081077	2.209	0.0011748	532.3146589196082	98.579	0.8822	98.455	97.988	98.87	-0.12413					26	20	2	0	0	0	0.027866	1	12240	12240		21.702	8.2483	1	80421	+		32813	35882	22596	22639	37687	37687					0.08462286497888272
KLMNIVNK	8	Unmodified	_KLMNIVNK_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2906494140625	2	480.288963	958.563372	-0.37983	-0.00018243	-3.7126	-0.0017831	-4.0925	-0.0019656	480.2866986430508	46.592	1.1299	46.439	46.135	47.265	-0.15301					54	30	3	0	0	0	0.027866	1	4696	4696		25.45	7.1258	1	1861300			32814	9246	22597	22640	37688	37688					0.08243294813428292
KLMQIQAV	8	Unmodified	_KLMQIQAV_					0	0	0		nc|ENSG00000165626|Q8N7W2-2|BEND7;ENSG00000165626|ENST00000466271|BEND7;nc|ENSG00000165626|Q8N7W2-3|BEND7	nc|ENSG00000165626|Q8N7W2-2|BEND7	nc|ENSG00000165626|Q8N7W2-2|BEND7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7781066894531	2	465.775688	929.536823	0.30012	0.00013979	3.7382	0.0017412	4.0383	0.001881	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0338	1	10021	10021		31.955	1.4512	1	1281300			32815	7439	22598	22641	37689	37689					0.06923605922111165
KLMQPKLVL	9	Unmodified	_KLMQPKLVL_					0	0	0			REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3060913085938	2	535.343738	1068.67292	-0.43469	-0.00023271	0.18411	9.8561E-05	-0.25058	-0.00013415	535.343776462972	78.75	1.909	78.558	77.723	79.632	-0.1921					62	45	2	0	0	0	0.024541	1	9666	9666		11.511	1.2458	1	126230	+		32816	36678	22599	22642	37690	37690					0.14133300432763463
KLMQQQQEV	9	Oxidation (M)	_KLM(Oxidation (M))QQQQEV_		KLM(1)QQQQEV		KLM(130)QQQQEV	0	0	1		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.292236328125	2	574.29243	1146.57031	-1.3706	-0.00078711	1.4552	0.0008357	0.084598	4.8584E-05	574.2931270490546	25.996	0.96377	25.996	25.694	26.658	0					43	22	3	0	0	0	0.043667	2	1274	1274;1285		131.03	20.912	1	869120			32817	3943	22600	22643	37691;37692	37691		155			0.002885629033244186
KLMQQQQEV	9	Oxidation (M)	_KLM(Oxidation (M))QQQQEV_		KLM(1)QQQQEV		KLM(140)QQQQEV	0	0	1		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.2923583984375	2	574.29243	1146.57031	-0.45131	-0.00025918	0.40886	0.00023481	-0.042449	-2.4378E-05	574.2925346994479	26.046	0.71145	26.023	25.693	26.405	-0.023088					47	16	4	0	0	0	0.03666	1	1267	1267		136.27	20.774	1	996250			32818	3943	22600	22643	37693	37693		155			0.002885629033244186
KLMQQQQEV	9	Oxidation (M)	_KLM(Oxidation (M))QQQQEV_		KLM(1)QQQQEV		KLM(140)QQQQEV	0	0	1		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.2924194335938	2	574.29243	1146.57031	-0.28981	-0.00016644	0.25674	0.00014744	-0.033071	-1.8992E-05	574.2924762114133	25.77	0.74831	25.85	25.54	26.288	0.080088					39	17	3	0	0	0	0.03666	1	1207	1207		136.27	37.639	1	951280			32819	3943	22600	22643	37694	37694		155			0.002885629033244186
KLMQQQQEV	9	Unmodified	_KLMQQQQEV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.2949829101562	2	566.294973	1130.57539	-1.1077	-0.0006273	0.75155	0.0004256	-0.35618	-0.0002017	566.295197275962	33.234	0.95258	33.234	32.941	33.894	0					63	25	5	0	0	0	0.015064	1	2378	2378		190.52	33.309	1	2328600			32820	3943	22600	22644	37695	37695					0.01532866765955987
KLMQQQQEV	9	Unmodified	_KLMQQQQEV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.2947998046875	2	566.294973	1130.57539	-0.92632	-0.00052457	0.48923	0.00027705	-0.43708	-0.00024752	566.2949982899922	33.09	0.6842	33.097	32.85	33.534	0.0066261					60	18	5	0	0	0	0.013293	2	2344	2333;2344		176.09	32.98	1	2640500			32821	3943	22600	22644	37696;37697	37697					0.01532866765955987
KLMQQQQEV	9	Unmodified	_KLMQQQQEV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.2945556640625	2	566.294973	1130.57539	-0.35943	-0.00020354	-0.2863	-0.00016213	-0.64573	-0.00036568	566.2946103443079	32.994	0.77826	33.05	32.721	33.5	0.056572					61	20	4	0	0	0	0.013293	1	2282	2282		176.09	32.2	1	2196800			32822	3943	22600	22644	37698	37698					0.01532866765955987
KLMQQQQEV	9	Unmodified	_KLMQQQQEV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	566.294973	1130.57539	-0.16326	-9.2456E-05	7.7324	0.0043788	7.5691	0.0042863	566.2989505781421	33.452	0.63838	33.221	32.916	33.554	-0.23107	0.08544	0.0080435	NaN	176.09	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395170			32823	3943	22600	22644							0.01532866765955987
KLMQQQQEV	9	Unmodified	_KLMQQQQEV_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	566.294973	1130.57539	-0.088484	-5.0108E-05	-0.59703	-0.00033809	-0.68551	-0.0003882	566.7961913120832	33.276	0.27749	33.076	32.855	33.133	-0.20019	-0.059859	-0.0013903	NaN	176.09	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83216			32824	3943	22600	22644							0.01532866765955987
KLMVLPAALYQ	11	Unmodified	_KLMVLPAALYQ_					0	0	0			REV__MINK1-ALOX12|1|fusion	REV__MINK1-ALOX12|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315673828125	3	416.245782	1245.71552	0.030335	1.2627E-05	-3.1366	-0.0013056	-3.1063	-0.001293	416.24471825881324	20.932	0.68017	20.755	20.286	20.967	-0.17721					17	13	2	0	0	0	0.024792	1	623	623		34.087	0.16487	1	26602	+		32825	21765	22601	22645	37699	37699					0.10248650770336099
KLNATNIEL	9	Unmodified	_KLNATNIEL_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2926025390625	2	508.292756	1014.57096	-0.31201	-0.00015859	0.19092	9.7041E-05	-0.12109	-6.155E-05	508.2927805593806	52.066	0.75118	52.066	51.803	52.554	0					55	19	4	0	0	0	0.016758	2	5582	5582;5596		153.04	18.225	1	7041800			32826	5609	22602	22646	37700;37701	37700					0.06425725614690236
KLNATNIEL	9	Unmodified	_KLNATNIEL_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2922668457031	2	508.292756	1014.57096	-0.15399	-7.8271E-05	0.02249	1.1431E-05	-0.1315	-6.6839E-05	508.29267853687554	52.186	0.73626	52.038	51.711	52.447	-0.14735					50	19	4	0	0	0	0.016542	2	5564	5564;5578		154.12	13.927	1	8216400			32827	5609	22602	22646	37702;37703	37702					0.06425725614690236
KLNATNIEL	9	Unmodified	_KLNATNIEL_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2927551269531	2	508.292756	1014.57096	-0.77796	-0.00039543	-0.41079	-0.0002088	-1.1888	-0.00060423	508.2919980678112	51.907	0.9561	51.999	51.754	52.71	0.091938					57	24	4	0	0	0	0.015752	2	5490	5466;5490		158.07	25.317	1	5545600			32828	5609	22602	22646	37704;37705	37705					0.06425725614690236
KLNATNIEL	9	Unmodified	_KLNATNIEL_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.292756	1014.57096	-0.14623	-7.433E-05	0.60081	0.00030539	0.45457	0.00023106	508.29315967226853	52.163	0.49485	51.979	51.778	52.273	-0.18404	-0.014466	0.00044944	NaN	158.07	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443700			32829	5609	22602	22646							0.06425725614690236
KLNAVPVA	8	Unmodified	_KLNAVPVA_					0	0	0			REV__ENST00000462391.5_1_10:103541605-103543114:-|nuORF	REV__ENST00000462391.5_1_10:103541605-103543114:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.8770751953125	2	406.255446	810.496338	0.63935	0.00025974	3.2128	0.0013052	3.8521	0.0015649	406.2566462648694	49.591	1.5045	49.311	48.791	50.295	-0.27977					68	39	2	0	0	0	0.027866	1	5065	5065		8.8223	0.59103	1	233800	+		32830	21691	22603	22647	37706	37706					0.08351007593989834
KLNAYKTK	8	Unmodified	_KLNAYKTK_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.2588806152344	2	483.292559	964.570566	-0.027894	-1.3481E-05	-0.37963	-0.00018347	-0.40753	-0.00019696	483.2922798380281	27.432	0.47163	27.189	26.995	27.466	-0.24217					22	10	3	0	0	0	0.027866	1	1535	1535		16.473	0	1	196800			32831	9677	22604	22648	37707	37707					0.08686350685502475
KLNEKEKH	8	Unmodified	_KLNEKEKH_					0	0	0			REV__nc|ENSG00000189348|A6NNH2|FAM90A27P	REV__nc|ENSG00000189348|A6NNH2|FAM90A27P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7880859375	2	513.290548	1024.56654	-1.1988	-0.00061533	1.9505	0.0010012	0.75167	0.00038582	513.2911393885596	27.351	0.51439	27.433	27.245	27.759	0.081291					16	13	2	0	0	0	0.027866	1	1472	1472		55.504	0	1	131090	+		32832	37045	22605	22649	37708	37708					0.055242611917947215
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.S539Rfs*4|1|0.29|ENSG00000178104|chr1:148967731-148967732|-/GA|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.7756958007812	2	563.776082	1125.53761	-0.77877	-0.00043905	0.90483	0.00051012	0.12606	7.1072E-05	563.7764061598778	54.716	0.5858	54.716	54.393	54.979	0					42	16	3	0	0	0	0.01388	2	6005	6005;6017		180.87	79.269	1	2587700			32833	8792	22606	22650	37709;37710	37709					-0.02013644219505295
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.S539Rfs*4|1|0.29|ENSG00000178104|chr1:148967731-148967732|-/GA|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.775634765625	2	563.776082	1125.53761	-0.38182	-0.00021526	0.43691	0.00024632	0.055092	3.106E-05	563.7761778787201	54.833	0.77097	54.683	54.229	55	-0.15036					44	21	3	0	0	0	0.01388	1	5993	5993		180.87	79.269	1	2526100			32834	8792	22606	22650	37711	37711					-0.02013644219505295
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.S539Rfs*4|1|0.29|ENSG00000178104|chr1:148967731-148967732|-/GA|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.776082	1125.53761	0.073502	4.1439E-05	-0.010806	-6.092E-06	0.062696	3.5347E-05	563.7758463025768	54.442	0.50896	54.54	54.26	54.769	0.098015	-0.086322	-0.00041646	NaN	180.87	46	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2886000			32835	8792	22606	22650							-0.02013644219505295
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.S539Rfs*4|1|0.29|ENSG00000178104|chr1:148967731-148967732|-/GA|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	563.776082	1125.53761	-0.40397	-0.00022775	1.008	0.00056831	0.60408	0.00034057	563.7763879917185	54.749	0.59284	54.603	54.281	54.873	-0.14609	-0.023855	0.00073236	NaN	180.87	33	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	959020			32836	8792	22606	22650							-0.02013644219505295
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.S539Rfs*4|1|0.29|ENSG00000178104|chr1:148967731-148967732|-/GA|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.776082	1125.53761	-0.037917	-2.1376E-05	0.085979	4.8473E-05	0.048062	2.7096E-05	563.7759190250068	54.83	0.79578	54.599	54.025	54.821	-0.23087	-0.027639	-0.00030733	NaN	180.87	33	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886510			32837	8792	22606	22650							-0.02013644219505295
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.S539Rfs*4|1|0.29|ENSG00000178104|chr1:148967731-148967732|-/GA|frameshift_variant;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	563.776082	1125.53761	0.70124	0.00039534	-0.52693	-0.00029707	0.17431	9.827E-05	563.7755406982988	54.824	0.74398	54.618	54.087	54.831	-0.20613	-0.0083584	-0.00099841	NaN	180.87	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987940			32838	8792	22606	22650							-0.02013644219505295
KLNENIKIL	9	Unmodified	_KLNENIKIL_					0	0	0		ENSG00000138109|ENST00000260682|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7763671875	2	542.839874	1083.66519	-0.44095	-0.00023937	-0.12079	-6.5568E-05	-0.56174	-0.00030493	542.8395838517611	68.236	1.0864	67.944	67.548	68.634	-0.29267					55	27	3	0	0	0	0.019502	1	8077	8077		99.375	0	1	932170			32839	5205	22607	22651	37712	37712					0.12670864436836382
KLNFWLIFL	9	Unmodified	_KLNFWLIFL_					0	0	0			REV__OR52N1|p.I94T|1|0.2|ENSG00000181001|chr11:5788536-5788536|A/G|missense_variant	REV__OR52N1|p.I94T|1|0.2|ENSG00000181001|chr11:5788536-5788536|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.36328125	2	597.357702	1192.70085	-0.33408	-0.00019956	2.0052	0.0011978	1.6712	0.00099828	597.3587791150173	98.823	1.5113	98.654	98.154	99.666	-0.16862					108	35	4	0	0	0	0.96855	1	12243	12243		26.796	4.8362	1	2695800	+		32840	27377	22608	22652	37713	37713					0.11220946684488808
KLNHNLVEP	9	Unmodified	_KLNHNLVEP_					0	0	0			REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2547607421875	2	532.298373	1062.58219	-0.34754	-0.00018499	-0.15824	-8.4232E-05	-0.50578	-0.00026923	532.2983130845386	52.293	0.87746	52.145	51.881	52.758	-0.14735					33	22	3	0	0	0	0.024427	1	5662	5662		26.693	0	1	2910700	+		32841	22393	22609	22653	37714	37714					0.05340547708851773
KLNIYKLY	8	Unmodified	_KLNIYKLY_					0	0	0			REV__ENSG00000183431|ENST00000373019|SF3A3	REV__ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2322387695312	2	527.81841	1053.62227	-0.07434	-3.9238E-05	0.30825	0.0001627	0.23391	0.00012346	527.8181849066473	67.724	0.50212	67.486	67.245	67.747	-0.23814					26	11	3	0	0	0	0.027866	1	7783	7783		24.203	0	1	497210	+		32842	27573	22610	22654	37715	37715					0.09760094379430484
KLNKAHTKG	9	Unmodified	_KLNKAHTKG_					0	0	0			REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	REV__nc|ENSG00000113761|Q9UL40-3|ZNF346	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.80078125	2	498.801083	995.587613	-0.34447	-0.00017182	-0.24763	-0.00012352	-0.5921	-0.00029534	498.8009173910325	31.542	0.85191	31.542	31.257	32.109	0					48	20	3	0	0	0	0.39228	1	2114	2114		66.429	0.6261	1	2541200	+		32843	22089	22611	22655	37716	37716					0.08964271291313253
KLNKLHRQ	8	Unmodified	_KLNKLHRQ_					0	0	0			REV__ENST00000440243.2_1_X:102342330-102342555:+|nuORF	REV__ENST00000440243.2_1_X:102342330-102342555:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8228149414062	2	518.82235	1035.63015	-0.84885	-0.0004404	3.9125	0.0020299	3.0637	0.0015895	518.8243902590402	80.593	1.0104	80.593	80.289	81.299	0					43	24	2	0	0	0	0.027866	1	10112	10112		50.025	4.0726	1	1071900	+		32844	32525	22612	22656	37717	37717					0.11375666419530717
KLNKNHWRLLI	11	Unmodified	_KLNKNHWRLLI_					0	0	0		ENST00000328090.9_2_10:5788145-5788349:+|nuORF	ENST00000328090.9_2_10:5788145-5788349:+|nuORF	ENST00000328090.9_2_10:5788145-5788349:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.2835693359375	3	478.961256	1433.86194	-0.045309	-2.1701E-05	2.3494	0.0011252	2.304	0.0011035	478.9625217933025	75.945	0.90308	75.672	75.345	76.248	-0.27267					37	22	2	0	0	0	0.024856	1	8944	8944		9.2118	0.41249	1	224830			32845	12301	22613	22657	37718	37718					0.16236089050448754
KLNLHDWLISM	11	Unmodified	_KLNLHDWLISM_					0	0	0			REV__ENST00000370546.5_2_10:100219485-100249948:-|nuORF	REV__ENST00000370546.5_2_10:100219485-100249948:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7510070800781	3	457.248074	1368.72239	-0.16135	-7.3778E-05	4.3813	0.0020033	4.22	0.0019296	457.2498274695427	41.869	0.52574	41.737	41.491	42.017	-0.13219					21	14	2	0	0	0	0.024759	1	3789	3789		17.833	3.7471	1	556900	+		32846	31131	22614	22658	37719	37719					0.05277963650905804
KLNLMQSSL	9	Unmodified	_KLNLMQSSL_					0	0	0		CCDC87|p.E780Q|1|0.15|ENSG00000182791|chr11:66590678-66590678|C/G|missense_variant	CCDC87|p.E780Q|1|0.15|ENSG00000182791|chr11:66590678-66590678|C/G|missense_variant	CCDC87|p.E780Q|1|0.15|ENSG00000182791|chr11:66590678-66590678|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2213134765625	2	517.289159	1032.56377	-1.2273	-0.00063485	-0.22576	-0.00011678	-1.453	-0.00075163	517.2890926162167	35.976	0.44765	35.933	35.688	36.136	-0.042454					21	12	2	0	0	0	0.023454	1	2811	2811		62.107	10.772	1	96870			32847	227	22615	22659	37720	37720					0.04878669742629427
KLNLVLLW	8	Unmodified	_KLNLVLLW_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.8090515136719	2	499.823495	997.632438	-0.85755	-0.00042862	2.4676	0.0012333	1.61	0.00080472	499.82536106245385	38.197	0.15843	37.975	37.832	37.99	-0.22149					7	4	2	0	0	0	0.027866	1	3102	3102		8.8223	0	1	117950	+		32848	21428	22616	22660	37721	37721					0.1335270210464614
KLNLVTKTK	9	Unmodified	_KLNLVTKTK_					0	0	0		ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20;nc|ENSG00000140153|Q8TBZ3-7|WDR20;ENST00000299135.6_1_14:102606435-102676214:+|nuORF;nc|ENSG00000140153|Q8TBZ3-4|WDR20;nc|ENSG00000140153|Q8TBZ3-5|WDR20;nc|ENSG00000140153|Q8TBZ3-6|WDR20	ENSG00000140153|ENST00000342702|WDR20	ENSG00000140153|ENST00000342702|WDR20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.8123168945312	2	522.842416	1043.67028	1.3198	0.00069004	-1.8481	-0.00096629	-0.52837	-0.00027625	522.8412186825311	23.019	0.32447	22.827	22.664	22.988	-0.19117					13	6	3	0	0	0	0.024456	1	859	859		28.081	0	1	46440			32849	5394	22617	22661	37722	37722					0.15019168299454577
KLNNLLLNN	9	Unmodified	_KLNNLLLNN_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|100|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|100|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|100|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3109741210938	2	528.314023	1054.61349	-0.82889	-0.00043792	0.77839	0.00041124	-0.050502	-2.6681E-05	528.3142237260392	57.346	0.60042	57.346	57.003	57.603	0					39	15	4	0	0	0	0.024374	1	6398	6398		40.778	0	1	3493000			32850	17893	22618	22662	37723	37723					0.08837120742941806
KLNPAKSL	8	Unmodified	_KLNPAKSL_					0	0	0		ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2874450683594	2	435.774003	869.533452	-0.64418	-0.00028072	1.2716	0.00055411	0.62738	0.00027339	435.77448182222696	26.09	0.60276	25.926	25.631	26.234	-0.16331					27	17	2	0	0	0	0.027866	1	1251	1251		65.803	2.8247	1	263790			32851	6748	22619	22663	37724	37724					0.09346679139753178
KLNPKKAR	8	Unmodified	_KLNPKKAR_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant;FLNA|p.G295Afs*4|1|0.66|ENSG00000196924|chrX:154366837-154366837|T/-|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7734069824219	2	477.813993	953.613434	-0.37043	-0.000177	0.072203	3.45E-05	-0.29823	-0.0001425	477.8141106270885	46.755	0.33043	46.561	46.449	46.779	-0.19387					12	9	2	0	0	0	0.027866	1	4518	4518		33.516	6.7195	1	98640			32852	9935;4979	22620	22664	37725	37725					0.13477165533595326
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;STT3A|p.L298F|1|0.36|ENSG00000134910|chr11:125608220-125608220|C/T|missense_variant;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.7978515625	2	551.798206	1101.58186	-0.44664	-0.00024645	-0.041239	-2.2756E-05	-0.48788	-0.00026921	551.7981214679127	53.08	1.0878	53.08	52.711	53.799	0					69	29	3	0	0	0	0.043667	3	5735	5711;5722;5735		131.03	62.245	1	4680700			32853	4843	22621	22665	37726;37727;37728	37728					0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;STT3A|p.L298F|1|0.36|ENSG00000134910|chr11:125608220-125608220|C/T|missense_variant;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.7978515625	2	551.798206	1101.58186	-0.91293	-0.00050375	0.48843	0.00026951	-0.4245	-0.00023424	551.7983515611245	53.187	1.1395	53.04	52.645	53.784	-0.14723					77	30	4	0	0	0	0.015752	3	5708	5698;5708;5721		158.07	89.288	1	5010000			32854	4843	22621	22665	37729;37730;37731	37730					0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;STT3A|p.L298F|1|0.36|ENSG00000134910|chr11:125608220-125608220|C/T|missense_variant;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.7982788085938	2	551.798206	1101.58186	-0.36182	-0.00019965	-0.15262	-8.4215E-05	-0.51443	-0.00028386	551.7980493276903	52.927	0.98736	53.022	52.641	53.629	0.095669					63	26	3	0	0	0	0.027092	3	5635	5611;5621;5635		143.89	63.538	1	5026200			32855	4843	22621	22665	37732;37733;37734	37734					0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;STT3A|p.L298F|1|0.36|ENSG00000134910|chr11:125608220-125608220|C/T|missense_variant;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.314453125	2	551.798206	1101.58186	0.17026	9.3949E-05	0.20529	0.00011328	0.37555	0.00020723	551.7982549267632	53.101	0.69694	52.974	52.632	53.329	-0.12705					37	17	3	0	0	0	0.024344	1	5568	5568		45.972	1.5951	1	919030			32856	4843	22621	22665	37735	37735					0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;STT3A|p.L298F|1|0.36|ENSG00000134910|chr11:125608220-125608220|C/T|missense_variant;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3157958984375	2	551.798206	1101.58186	0.22775	0.00012567	0.11157	6.1566E-05	0.33932	0.00018724	551.7983090986711	53.289	0.68508	53.03	52.723	53.408	-0.25838					37	17	3	0	0	0	0.023842	1	5587	5587		87.696	18.069	1	1093300			32857	4843	22621	22665	37736	37736					0.035131279889810685
KLNQNMDLHI	10	Unmodified	_KLNQNMDLHI_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.8862609863281	3	409.216774	1224.62849	0.42478	0.00017383	0.48808	0.00019973	0.91287	0.00037356	409.21686998192416	35.065	1.1229	35.065	34.408	35.531	0					40	29	2	0	0	0	0.03519	1	2587	2587		37.508	0	1	75590			32858	5284	22622	22666	37737	37737					0.025162445486330398
KLNQVILPP	9	Unmodified	_KLNQVILPP_					0	0	0		ENST00000222584.7_1_7:21469183-21469285:+|nuORF	ENST00000222584.7_1_7:21469183-21469285:+|nuORF	ENST00000222584.7_1_7:21469183-21469285:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2637634277344	2	511.32386	1020.63317	-0.69109	-0.00035337	1.1335	0.00057958	0.44239	0.0002262	511.3242847675731	80.574	0.72811	80.574	80.289	81.017	0					37	17	3	0	0	0	0.024506	1	10066	10066		23.042	3.6825	1	332250			32859	11189	22623	22667	37738	37738					0.12367496753699925
KLNRPSFNI	9	Unmodified	_KLNRPSFNI_					0	0	0			REV__ENST00000445069.4_1_11:72065347-72145518:-|nuORF	REV__ENST00000445069.4_1_11:72065347-72145518:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7896728515625	2	544.81419	1087.61383	-1.3175	-0.0007178	-2.4299	-0.0013239	-3.7474	-0.0020417	544.8126143178134	33.309	0.45459	33.316	33.117	33.572	0.0066261					22	12	3	0	0	0	0.024457	1	2385	2385		29.15	0	1	150600	+		32860	32604	22624	22668	37739	37739					0.07352540462784418
KLNSLKLKM	9	Oxidation (M)	_KLNSLKLKM(Oxidation (M))_		KLNSLKLKM(1)		KLNSLKLKM(120)	0	0	1		nc|ENSG00000178662|Q8WYN3-2|CSRNP3;ENSG00000178662|ENST00000651982|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8329467773438	2	545.836277	1089.658	-1.0799	-0.00058944	-2.9848	-0.0016292	-4.0647	-0.0022187	545.8347338421073	48.624	2.0602	48.523	48.147	50.207	-0.1008					182	54	7	0	0	0	0.067814	1	4835	4835		122.18	12.056	1	27031000			32861	8827	22625	22669	37740	37740		371			0.11675808564768886
KLNVLTLKKEP	11	Unmodified	_KLNVLTLKKEP_					0	0	0		ENSG00000153823|ENST00000392055|PID1;nc|ENSG00000153823|Q7Z2X4-2|PID1;nc|ENSG00000153823|Q7Z2X4|PID1;ENST00000482518.6_1_2:229715274-230109633:-|nuORF	ENSG00000153823|ENST00000392055|PID1	ENSG00000153823|ENST00000392055|PID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.3028259277344	3	428.274617	1281.80202	0.016741	7.1695E-06	-0.11207	-4.7997E-05	-0.095331	-4.0828E-05	428.2744249377234	63.115	0.48653	62.931	62.746	63.233	-0.18386					27	11	3	0	0	0	0.024812	1	7099	7099		14.243	6.0082	1	419310			32862	6361	22626	22670	37741	37741					0.17239353596528417
KLNWLFSSQ	9	Unmodified	_KLNWLFSSQ_					0	0	0			REV__ENST00000417775.5_1_1:75190483-75198727:-|nuORF	REV__ENST00000417775.5_1_1:75190483-75198727:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.3139038085938	2	561.800749	1121.58694	-1.1663	-0.00065521	-2.9706	-0.0016689	-4.1369	-0.0023241	561.7989735899378	44.589	0.49264	44.378	44.184	44.677	-0.21109					28	12	3	0	0	0	0.024527	1	4194	4194		18.262	0	1	492120	+		32863	32100	22627	22671	37742	37742					0.031014318516099593
KLPCEKRW	8	Unmodified	_KLPCEKRW_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|120|3|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|120|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.323486328125	2	530.292037	1058.56952	1.7113	0.00090747	4.1654	0.0022089	5.8767	0.0031164	530.2942003822005	36.545	0.44381	36.347	36.172	36.616	-0.19829					18	10	2	0	0	0	0.027866	1	2873	2873		56.721	0	1	203570	+		32864	36117	22628	22672	37743	37743					0.04257813044955583
KLPCFFRW	8	Unmodified	_KLPCFFRW_					0	0	0		ENST00000414118.2_1_7:102743878-102755668:-|nuORF	ENST00000414118.2_1_7:102743878-102755668:-|nuORF	ENST00000414118.2_1_7:102743878-102755668:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.8224487304688	2	548.791672	1095.56879	-0.19118	-0.00010492	2.5462	0.0013973	2.355	0.0012924	548.7931374423935	57.098	0.73834	56.873	56.582	57.321	-0.22479					37	19	3	0	0	0	0.027866	1	6192	6192		18.324	0	1	882680			32865	13856	22629	22673	37744	37744					0.02483018395923864
KLPCHLLLL	9	Unmodified	_KLPCHLLLL_					0	0	0			REV__ENST00000547216.1_1_12:57871100-57871594:-|nuORF	REV__ENST00000547216.1_1_12:57871100-57871594:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.7979736328125	2	525.33063	1048.64671	-0.69317	-0.00036414	3.222	0.0016926	2.5289	0.0013285	525.3323898486732	40.195	0.26142	40.218	40.013	40.275	0.023006					9	6	2	0	0	0	0.024535	1	3428	3428		18.324	0	1	160790	+		32866	34862	22630	22674	37745	37745					0.12433031261298311
KLPDWEAL	8	Unmodified	_KLPDWEAL_					0	0	0			REV__ENSG00000282757|ENST00000633875|DUXB	REV__ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2883605957031	2	486.263468	970.512382	0.45241	0.00021999	-1.1026	-0.00053615	-0.65018	-0.00031616	486.26233048961296	58.805	1.3109	58.805	57.946	59.257	0					64	35	3	0	0	0	0.027866	1	6638	6638		51.335	1.3109	1	1647100	+		32867	29239	22631	22675	37746	37746					0.025946690402406603
KLPEKRNK	8	Unmodified	_KLPEKRNK_					0	0	0		ENST00000495376.5_1_3:98489996-98502446:+|nuORF	ENST00000495376.5_1_3:98489996-98502446:+|nuORF	ENST00000495376.5_1_3:98489996-98502446:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2950744628906	2	506.816733	1011.61891	-1.122	-0.00056864	2.1163	0.0010726	0.99434	0.00050395	506.8170299489814	21.118	0.73371	21.118	20.609	21.342	0					28	14	4	0	0	0	0.027866	1	645	645		25.45	1.2474	1	108090			32868	15550	22632	22676	37747	37747					0.11356844325405291
KLPFLRPTE	9	Unmodified	_KLPFLRPTE_					0	0	0			REV__ENSG00000176953|ENST00000320805|NFATC2IP	REV__ENSG00000176953|ENST00000320805|NFATC2IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.8177490234375	2	550.826766	1099.63898	-1.1835	-0.00065191	1.0943	0.00060278	-0.089197	-4.9132E-05	550.8272141446226	39.664	0.52177	39.688	39.421	39.942	0.023727					24	14	2	0	0	0	0.024523	1	3361	3361		15.642	0	1	251250	+		32869	27066	22633	22677	37748	37748					0.0931459526539129
KLPGKLGMKNK	11	Unmodified	_KLPGKLGMKNK_					0	0	0			REV__ENST00000559889.5_1_15:78449787-78454580:+|nuORF	REV__ENST00000559889.5_1_15:78449787-78454580:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	405.253159	1212.73765	0.82845	0.00033573	-2.8041	-0.0011364	-1.9757	-0.00080064	405.2513020455076	26.934	0.36235	27.015	26.883	27.245	0.081293					13	9	2	0	0	0	0.024792	1	1364	1364		21.78	0	1	123460	+		32870	26012	22634	22678	37749	37749					0.13978875238763067
KLPHGNVK	8	Unmodified	_KLPHGNVK_					0	0	0			REV__ENSG00000170967|ENST00000302259|DDI1	REV__ENSG00000170967|ENST00000302259|DDI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.2700500488281	2	446.771794	891.529036	-0.13515	-6.038E-05	0.63924	0.00028559	0.50409	0.00022521	446.7717786238978	22.181	1.2187	22.106	21.793	23.011	-0.075296					48	25	4	0	0	0	0.027866	1	791	791		31.955	13.63	1	541530	+		32871	26527	22635	22679	37750	37750					0.07893214716841612
KLPHRPAP	8	Unmodified	_KLPHRPAP_					0	0	0			REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.267578125	2	458.279786	914.54502	-1.0784	-0.00049422	0.28635	0.00013123	-0.79206	-0.00036299	458.279859355861	48.383	0.35955	48.107	47.966	48.326	-0.27598					12	9	2	0	0	0	0.027866	1	4803	4803		12.207	0	1	111630	+		32872	21199	22636	22680	37751	37751					0.08432920953737266
KLPIERRKPRR	11	Unmodified	_KLPIERRKPRR_					0	0	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.301025390625	3	483.647671	1447.92118	-1.0231	-0.00049481	-1.1968	-0.00057885	-2.2199	-0.0010737	483.9814744728655	54.951	1.5766	55.049	54.525	56.102	0.098015					61	43	2	0	0	0	0.024851	1	5930	5930		15.921	7.1213	1	139960	+		32873	19854	22637	22681	37752	37752					0.21513985064598273
KLPLRFSD	8	Unmodified	_KLPLRFSD_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	488.28662109375	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.09	1	104.92	104.42	105.42	-0.16484								0	0	0	0.83467	1	13069	13069		31.955	6.5047	1				32874	1349	22638	22682	37753	37753					0.0666206416847217
KLPLRGNG	8	Unmodified	_KLPLRGNG_					0	0	0			REV__ENSG00000173621|ENST00000309602|LRFN4	REV__ENSG00000173621|ENST00000309602|LRFN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.8609313964844	2	427.763969	853.513385	-1.2145	-0.00051954	1.644	0.00070324	0.42943	0.0001837	427.76459862722595	20.829	0.58649	20.829	20.609	21.195	0					31	11	4	0	0	0	0.027866	1	608	608		12.207	4.5166	1	162250	+		32875	26791	22639	22683	37754	37754					0.08076928199807298
KLPLRGNG	8	Unmodified	_KLPLRGNG_					0	0	0			REV__ENSG00000173621|ENST00000309602|LRFN4	REV__ENSG00000173621|ENST00000309602|LRFN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	427.763969	853.513385	-0.45084	-0.00019285	0.85974	0.00036777	0.40889	0.00017491	427.76426456076445	20.974	0.57389	20.884	20.584	21.158	-0.090092	0.017678	-1.3104E-05	NaN	12.207	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190310	+		32876	26791	22639	22683							0.08076928199807298
KLPLRGNG	8	Unmodified	_KLPLRGNG_					0	0	0			REV__ENSG00000173621|ENST00000309602|LRFN4	REV__ENSG00000173621|ENST00000309602|LRFN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	427.763969	853.513385	0.91157	0.00038994	-0.30006	-0.00012836	0.6115	0.00026158	427.7637762030098	20.817	0.54108	20.886	20.612	21.153	0.068901	0.019478	-0.0010053	NaN	12.207	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165250	+		32877	26791	22639	22683							0.08076928199807298
KLPLTMAF	8	Unmodified	_KLPLTMAF_					0	0	0			REV__PRKD1|p.E91Nfs*27|1|0.14|ENSG00000184304|chr14:29725668-29725668|C/-|frameshift_variant	REV__PRKD1|p.E91Nfs*27|1|0.14|ENSG00000184304|chr14:29725668-29725668|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.75897216796875	2	460.767332	919.52011	-0.081884	-3.7729E-05	4.0134	0.0018493	3.9315	0.0018115	460.76898760328686	36.721	0.50915	36.658	36.432	36.941	-0.063385					16	12	2	0	0	0	0.027866	1	2911	2911		26.796	0	1	100450	+		32878	37406	22640	22684	37755	37755					0.057131050361590496
KLPMKWLY	8	Unmodified	_KLPMKWLY_					0	0	0		ENST00000370303.4_1_1:93580250-93580589:+|nuORF	ENST00000370303.4_1_1:93580250-93580589:+|nuORF	ENST00000370303.4_1_1:93580250-93580589:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7971801757812	2	539.809531	1077.60451	-1.2232	-0.00066027	-3.3431	-0.0018046	-4.5662	-0.0024649	540.310257197846	77.523	0.3872	77.361	77.097	77.484	-0.16196					11	8	2	0	0	0	0.027866	1	9194	9194		33.516	0	1	123920			32879	12954	22641	22685	37756	37756					0.06881055852909412
KLPMKWLY	8	Unmodified	_KLPMKWLY_					0	0	0		ENST00000370303.4_1_1:93580250-93580589:+|nuORF	ENST00000370303.4_1_1:93580250-93580589:+|nuORF	ENST00000370303.4_1_1:93580250-93580589:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7803955078125	2	539.809531	1077.60451	-1.3698	-0.00073944	-0.33712	-0.00018198	-1.7069	-0.00092142	539.8094056997127	28.314	0.40063	28.162	28	28.401	-0.15195					14	9	3	0	0	0	0.027866	1	1619	1619		26.796	0	1	110700			32880	12954	22641	22685	37757	37757					0.06881055852909412
KLPMLKVL	8	Unmodified	_KLPMLKVL_					0	0	0		ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3117370605469	2	471.314449	940.614345	-0.60055	-0.00028305	-3.0415	-0.0014335	-3.6421	-0.0017166	471.31254162937506	44.466	2.6365	44.361	43.507	46.144	-0.10468					148	71	3	0	0	0	0.027866	1	4207	4207		12.959	0	1	1049400			32881	7266	22642	22686	37758	37758					0.14166243858301186
KLPNKLSLS	9	Unmodified	_KLPNKLSLS_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.78765869140625	2	500.313492	998.612431	0.63098	0.00031569	-2.0794	-0.0010403	-1.4484	-0.00072464	500.31289319789397	72.201	0.67869	72.211	71.652	72.331	0.0097733					30	17	3	0	0	0	0.024539	1	8714	8714		20.947	6.0821	1	132700	+		32882	22245	22643	22687	37759	37759					0.11306906374034043
KLPNTKIR	8	Unmodified	_KLPNTKIR_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2715759277344	2	485.313826	968.613099	-0.49866	-0.00024201	0.098323	4.7717E-05	-0.40034	-0.00019429	485.3136816983988	32.466	0.68464	32.528	32.238	32.923	0.062885					33	17	3	0	0	0	0.027866	1	2221	2221		16.473	0	1	130000			32883	9157	22644	22688	37760	37760					0.12753745813756723
KLPPFLNPF	9	Unmodified	_KLPPFLNPF_					0	0	0			REV__ENSG00000162496|ENST00000616661|DHRS3	REV__ENSG00000162496|ENST00000616661|DHRS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3497924804688	2	536.813128	1071.6117	-0.57527	-0.00030881	1.8496	0.0009929	1.2743	0.00068408	536.81313378818	87.8	0.52212	87.663	87.459	87.981	-0.13734					19	12	2	0	0	0	0.024506	1	10672	10672		23.042	0	1	117760	+		32884	25448	22645	22689	37761	37761					0.07876111724976909
KLPRKPPPI	9	Unmodified	_KLPRKPPPI_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2265625	2	523.347669	1044.68079	-0.020461	-1.0708E-05	-0.039459	-2.0651E-05	-0.05992	-3.1359E-05	523.3475098117333	52.6	0.40308	52.411	52.188	52.591	-0.18982					16	9	2	0	0	0	0.024535	1	5452	5452		18.324	6.1176	1	175730	+		32885	25823	22646	22690	37762	37762					0.16023195744537588
KLPRKPPPI	9	Unmodified	_KLPRKPPPI_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.347669	1044.68079	-0.86603	-0.00045323	0.37995	0.00019884	-0.48608	-0.00025439	523.3477956003182	52.534	0.39994	52.534	52.311	52.711	0	0.052127	0.00056505	NaN	18.324	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114620	+		32886	25823	22646	22690							0.16023195744537588
KLPRKPPPI	9	Unmodified	_KLPRKPPPI_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.347669	1044.68079	0.18691	9.782E-05	-0.70541	-0.00036918	-0.5185	-0.00027136	523.3473309830401	52.66	0.4719	52.513	52.248	52.72	-0.14723	0.031154	-0.00057099	NaN	18.324	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82408	+		32887	25823	22646	22690							0.16023195744537588
KLPRKPPPI	9	Unmodified	_KLPRKPPPI_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.347669	1044.68079	-0.060296	-3.1556E-05	-0.75043	-0.00039273	-0.81072	-0.00042429	523.3473546784752	52.378	0.38853	52.47	52.321	52.71	0.091942	-0.012064	-0.00061811	NaN	18.324	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89443	+		32888	25823	22646	22690							0.16023195744537588
KLPRSSDL	8	Unmodified	_KLPRSSDL_					0	0	0		ENST00000597683.1_1_19:24216413-24232238:+|nuORF	ENST00000597683.1_1_19:24216413-24232238:+|nuORF	ENST00000597683.1_1_19:24216413-24232238:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2378845214844	2	458.266542	914.51853	-0.11444	-5.2444E-05	-0.049718	-2.2784E-05	-0.16416	-7.5228E-05	458.2662812910398	35.648	0.58336	35.692	35.42	36.003	0.04406					23	14	2	0	0	0	0.027866	1	2690	2690		44.117	0	1	343910			32889	17454	22647	22691	37763	37763					0.05785187271760606
KLPSLLASPQL	11	Unmodified	_KLPSLLASPQL_					0	0	0			REV__ENST00000370220.1_1_10:102759899-102760451:+|nuORF	REV__ENST00000370220.1_1_10:102759899-102760451:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.8576049804688	2	583.860806	1165.70706	0.21983	0.00012835	-3.4235	-0.0019988	-3.2037	-0.0018705	583.8586504901666	97.148	1.1572	97.024	96.617	97.774	-0.12368					90	25	5	0	0	0	1.0292	1	12096	12096		30.318	5.7985	1	1344500	+		32890	31117	22648	22692	37764	37764					0.1308342012534922
KLPSPLGNPAL	11	Unmodified	_KLPSPLGNPAL_					0	0	0		nc|ENSG00000142611|Q9HAZ2-4|PRDM16;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16	nc|ENSG00000142611|Q9HAZ2-4|PRDM16	nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8302001953125	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	1.013	1	10474	10474		33.922	1.1092	1	1711900			32891	5575	22649	22693	37765	37765					0.10094577919790026
KLPSPLGNPAL	11	Unmodified	_KLPSPLGNPAL_					0	0	0		nc|ENSG00000142611|Q9HAZ2-4|PRDM16;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16	nc|ENSG00000142611|Q9HAZ2-4|PRDM16	nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.830078125	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.013	1	10830	10830		33.922	1.1092	1	5986700			32892	5575	22649	22693	37766	37766					0.10094577919790026
KLPSRRQP	8	Unmodified	_KLPSRRQP_					0	0	0		nc|ENSG00000135063|Q15884-1|ENTREP1;nc|ENSG00000135063|Q15884|ENTREP1;ENSG00000135063|ENST00000303068|ENTREP1	nc|ENSG00000135063|Q15884-1|ENTREP1	nc|ENSG00000135063|Q15884-1|ENTREP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2716979980469	2	491.30125	980.587947	-0.39551	-0.00019431	-0.52514	-0.000258	-0.92064	-0.00045231	491.30083040590813	33.726	0.63771	33.721	33.31	33.948	-0.0045624					41	16	3	0	0	0	0.027866	1	2416	2416		40.573	16.37	1	535590			32893	4853	22650	22694	37767	37767					0.09687691011174593
KLPSSEVVKF	10	Unmodified	_KLPSSEVVKF_					0	0	0		ENSG00000145365|ENST00000361717|TIFA	ENSG00000145365|ENST00000361717|TIFA	ENSG00000145365|ENST00000361717|TIFA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3302001953125	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.0122	1	11028	11028		44.377	1.5129	1	4134200			32894	5811	22651	22695	37768	37768					0.0881915819995811
KLPVHMGL	8	Unmodified	_KLPVHMGL_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.89654541015625	2	447.765123	893.515694	-0.4029	-0.0001804	3.7206	0.001666	3.3177	0.0014856	447.76674112512694	24.694	0.66226	24.694	24.123	24.786	0					17	14	2	0	0	0	0.027866	1	1039	1039		20.482	0	1	63520			32895	6373	22652	22696	37769	37769					0.06467640613254844
KLPVKVRS	8	Unmodified	_KLPVKVRS_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2802734375	2	463.810919	925.607286	0.47918	0.00022225	-0.48305	-0.00022405	-0.0038717	-1.7957E-06	463.8105379039997	41.117	0.60714	40.994	40.653	41.26	-0.12318					36	16	3	0	0	0	0.027866	1	3615	3615		17.365	0	1	663160			32896	6183	22653	22697	37770	37770					0.14150647302085417
KLPVRHAVL	9	Unmodified	_KLPVRHAVL_					0	0	0			REV__MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant	REV__MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.81396484375	2	516.837468	1031.66038	-0.88636	-0.0004581	2.5303	0.0013077	1.6439	0.00084963	516.8383845471116	65.062	0.21391	65.099	65.007	65.221	0.037384					6	5	2	0	0	0	0.024535	1	7596	7596		18.324	6.8134	1	71639	+		32897	24095	22654	22698	37771	37771					0.14582025084723682
KLPYVTMGSGS	11	Unmodified	_KLPYVTMGSGS_					0	0	0		ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	ENSG00000136930|ENST00000259457|PSMB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2740478515625	2	570.291899	1138.56925	0.3789	0.00021608	-0.17405	-9.9261E-05	0.20484	0.00011682	570.2914513274185	56.643	0.58133	56.441	56.052	56.633	-0.20208					23	14	2	0	0	0	0.02475	1	6153	6153		42.864	24.54	1	287510			32898	5067	22655	22699	37772	37772					0.0055034853444340115
KLQAVVPLPDA	11	Unmodified	_KLQAVVPLPDA_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8435668945312	2	575.845156	1149.67576	-1.2575	-0.00072414	-2.5466	-0.0014665	-3.8042	-0.0021906	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0292	1	11143	11143		30.318	3.6248	1	6251500			32899	6128	22656	22700	37773	37773					0.10690847091291289
KLQAVVPLPDA	11	Unmodified	_KLQAVVPLPDA_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8432006835938	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.018	1	11301	11301		32.812	0.85756	1	6382400			32900	6128	22656	22700	37774	37774					0.10690847091291289
KLQAVVPLPDA	11	Unmodified	_KLQAVVPLPDA_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8424682617188	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0442	1	11338	11338		26.693	1.2427	1	5880000			32901	6128	22656	22700	37775	37775					0.10690847091291289
KLQDELKLL	9	Unmodified	_KLQDELKLL_					0	0	0		nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2896728515625	2	550.339707	1098.66486	-1.0133	-0.00055767	-0.027504	-1.5137E-05	-1.0408	-0.0005728	550.339533726998	47.842	1.003	47.901	47.647	48.65	0.059097					69	28	4	0	0	0	0.024389	1	4795	4795		51.193	0	1	3119800			32902	1161	22657	22701	37776	37776					0.1194744471699778
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.8036193847656	2	511.803291	1021.59203	-0.47306	-0.00024211	0.5961	0.00030509	0.12304	6.2974E-05	511.80336503689006	45.6	1.3677	45.6	45.079	46.447	0					96	39	4	0	0	0	0.10174	2	4397	4397;4408		110.12	16.924	1	3970600			32903	9239	22658	22702	37777;37778	37777					0.08209735714228827
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.8031005859375	2	511.803291	1021.59203	-0.64638	-0.00033082	0.73892	0.00037818	0.092536	4.736E-05	511.80348854068785	45.735	1.236	45.583	45.041	46.277	-0.15156					93	35	4	0	0	0	0.03849	2	4402	4402;4415		134.81	17.907	1	4137000			32904	9239	22658	22702	37779;37780	37779					0.08209735714228827
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.80316162109375	2	511.803291	1021.59203	-0.46059	-0.00023573	0.64071	0.00032792	0.18012	9.2186E-05	511.80340818911185	45.6	1.3957	45.644	45.038	46.433	0.04388					108	40	4	0	0	0	0.067814	1	4340	4340		122.18	17.429	1	3859900			32905	9239	22658	22702	37781	37781					0.08209735714228827
KLQDILMEL	9	Oxidation (M)	_KLQDILM(Oxidation (M))EL_		KLQDILM(1)EL		KLQDILM(110)EL	0	0	1			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8088989257812	2	559.809925	1117.6053	-0.39936	-0.00022357	-2.3301	-0.0013044	-2.7295	-0.001528	559.8084236581117	82.817	0.5589	82.817	82.622	83.18	0					41	12	4	0	0	0	0.11092	1	10348	10348		108.09	6.8349	1	1241300	+		32906	23606	22659	22703	37782	37782		701			0.051198057112969764
KLQDKKIE	8	Unmodified	_KLQDKKIE_					0	0	0			REV__FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant	REV__FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2879638671875	2	501.303124	1000.5917	0.41771	0.0002094	-0.12469	-6.2507E-05	0.29302	0.00014689	501.3028381632288	71.7	0.22425	71.411	71.313	71.537	-0.28858					8	5	2	0	0	0	0.027866	1	8645	8645		82.305	0	1	109990	+		32907	27975	22660	22704	37783	37783					0.09142315994358796
KLQDKKIE	8	Unmodified	_KLQDKKIE_					0	0	0			REV__FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant	REV__FANCM|p.L1738Sfs*11|1|0.18|ENSG00000187790|chr14:45189232-45189233|-/CAGTGGGGAATTTATAGCCACTCATGGGC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.303124	1000.5917	0.19912	9.9821E-05	0.754	0.00037798	0.95312	0.0004778	501.3049963113415	72.06	0.12297	71.784	71.706	71.829	-0.27509	0.18668	7.5218E-05	NaN	82.305	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25148	+		32908	27975	22660	22704							0.09142315994358796
KLQEANAQL	9	Unmodified	_KLQEANAQL_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7819519042969	2	507.782556	1013.55056	-1.2407	-0.00063	0.17488	8.8802E-05	-1.0658	-0.0005412	507.78250341956095	36.146	0.51929	36.146	35.886	36.406	0					40	14	4	0	0	0	0.03201	2	2840	2840;2851		139.97	29.851	1	5215900			32909	4559	22661	22705	37784;37785	37784					0.04432554954883017
KLQEANAQL	9	Unmodified	_KLQEANAQL_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.78350830078125	2	507.782556	1013.55056	-1.2318	-0.00062548	0.18576	9.4326E-05	-1.046	-0.00053115	507.7825503385332	36.008	0.69106	35.965	35.726	36.417	-0.042458					51	19	5	0	0	0	0.03201	2	2810	2800;2810		139.97	17.794	1	4712500			32910	4559	22661	22705	37786;37787	37787					0.04432554954883017
KLQEANAQL	9	Unmodified	_KLQEANAQL_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7828674316406	2	507.782556	1013.55056	-0.5313	-0.00026978	-0.56243	-0.00028559	-1.0937	-0.00055537	507.7821339826676	36.074	0.4853	36.112	35.816	36.301	0.038044					37	13	4	0	0	0	0.016758	2	2778	2768;2778		153.04	30.86	1	4527500			32911	4559	22661	22705	37788;37789	37789					0.04432554954883017
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3235473632812	2	560.324057	1118.63356	0.12358	6.9243E-05	-1.2442	-0.00069714	-1.1206	-0.0006279	560.323343322204	67.65	2.71	67.65	67.245	69.954	0					139	69	5	0	0	0	0.012922	7	8110	8074;8086;8098;8110;8123;8134;8148		199.7	37.452	1	41477000			32912	349	22662	22706	37790;37791;37792;37793;37794;37795;37796	37793					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3233642578125	2	560.324057	1118.63356	-0.10265	-5.7516E-05	-0.91648	-0.00051352	-1.0191	-0.00057104	560.3235785555767	68.094	2.6183	67.806	67.347	69.965	-0.28834					144	65	6	0	0	0	0.013442	7	8111	8099;8111;8123;8135;8147;8160;8173		214.23	51.978	1	39659000			32913	349	22662	22706	37797;37798;37799;37800;37801;37802;37803	37798					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3235473632812	2	560.324057	1118.63356	0.17126	9.5963E-05	-1.2753	-0.00071459	-1.104	-0.00061862	560.3234373721797	67.818	2.1671	67.837	67.466	69.633	0.018921					147	56	5	0	0	0	0.012922	8	8021	8009;8021;8033;8045;8057;8070;8082;8095		218.73	51.501	1	37917000			32914	349	22662	22706	37804;37805;37806;37807;37808;37809;37810;37811	37805					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3236694335938	2	560.324057	1118.63356	0.77848	0.0004362	-1.2787	-0.0007165	-0.50025	-0.0002803	560.3232096090272	68.046	1.1866	67.79	67.367	68.554	-0.25516					96	28	7	0	0	0	0.013442	4	7856	7833;7844;7856;7872		185.72	31.814	1	6095500			32915	349	22662	22706	37812;37813;37814;37815	37814					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3238525390625	2	560.324057	1118.63356	0.2564	0.00014367	-0.68933	-0.00038625	-0.43293	-0.00024258	560.3235215853144	68.017	1.0117	67.783	67.387	68.399	-0.23376					97	24	7	0	0	0	0.014475	3	7864	7839;7851;7864		185.72	31.6	1	5922000			32916	349	22662	22706	37816;37817;37818	37818					0.07898871682891695
KLQEFLQTL	9	Unmodified	_KLQEFLQTL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.32421875	2	560.324057	1118.63356	-0.037508	-2.1017E-05	-0.41425	-0.00023211	-0.45175	-0.00025313	560.3237725732897	68.01	0.88303	67.772	67.466	68.349	-0.23814					87	21	7	0	0	0	0.013442	3	7840	7829;7840;7853		177.3	35.784	1	5980600			32917	349	22662	22706	37819;37820;37821	37820					0.07898871682891695
KLQEIENAI	9	Unmodified	_KLQEIENAI_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2982788085938	2	529.298039	1056.58152	-0.45651	-0.00024163	0.60376	0.00031957	0.14725	7.7938E-05	529.2982819434776	50.856	0.94384	50.707	50.46	51.404	-0.14916					67	26	4	0	0	0	0.038547	1	5327	5327		134.77	19.871	1	4816200			32918	6204	22663	22707	37822	37822					0.0554970826913177
KLQEIENAI	9	Unmodified	_KLQEIENAI_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2977905273438	2	529.298039	1056.58152	-0.28239	-0.00014947	0.34367	0.0001819	0.061275	3.2433E-05	529.298161019505	50.494	0.98937	50.575	50.344	51.333	0.08099					74	27	5	0	0	0	0.038547	1	5228	5228		134.77	11.557	1	4669800			32919	6204	22663	22707	37823	37823					0.0554970826913177
KLQELENRL	9	Unmodified	_KLQELENRL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.829833984375	2	571.830037	1141.64552	-0.57662	-0.00032973	-0.050788	-2.9042E-05	-0.62741	-0.00035877	571.8300030646996	41.806	1.1374	41.806	41.505	42.642	0					103	32	5	0	0	0	0.01388	2	3772	3772;3782		180.87	17.719	1	11111000			32920	1175	22664	22708	37824;37825	37824					0.08036488426091637
KLQELENRL	9	Unmodified	_KLQELENRL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.829833984375	2	571.830037	1141.64552	-0.28322	-0.00016196	-0.29353	-0.00016785	-0.57675	-0.0003298	571.8298780270322	42.022	1.1812	41.89	41.528	42.709	-0.1322					105	33	5	0	0	0	0.015752	2	3800	3787;3800		158.07	8.9627	1	9964300			32921	1175	22664	22708	37826;37827	37827					0.08036488426091637
KLQELENRL	9	Unmodified	_KLQELENRL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.82958984375	2	571.830037	1141.64552	-0.67637	-0.00038677	0.21496	0.00012292	-0.46141	-0.00026385	571.8301451563084	42.013	1.1516	42.039	41.709	42.861	0.026012					94	32	5	0	0	0	0.013065	4	3773	3751;3762;3773;3787		200.16	24.07	1	9849300			32922	1175	22664	22708	37828;37829;37830;37831	37830					0.08036488426091637
KLQELENRL	9	Unmodified	_KLQELENRL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	571.830037	1141.64552	0.0008027	4.5901E-07	-0.14437	-8.2558E-05	-0.14357	-8.2099E-05	571.8298296822064	41.965	0.55085	41.842	41.565	42.116	-0.12299	-0.069847	-0.00015509	NaN	180.87	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530910			32923	1175	22664	22708							0.08036488426091637
KLQELENRL	9	Unmodified	_KLQELENRL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	571.830037	1141.64552	-0.38738	-0.00022151	0.37175	0.00021258	-0.015624	-8.9344E-06	571.8301349900844	42.168	0.46124	41.936	41.733	42.194	-0.23186	0.02456	0.00043518	NaN	180.87	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	574630			32924	1175	22664	22708							0.08036488426091637
KLQELENRL	9	Unmodified	_KLQELENRL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	571.830037	1141.64552	-0.19182	-0.00010969	-0.20426	-0.0001168	-0.39608	-0.00022649	571.8297518394237	42.188	0.49049	41.958	41.725	42.216	-0.2303	0.045885	-0.00022358	NaN	180.87	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608630			32925	1175	22664	22708							0.08036488426091637
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.8109741210938	2	567.811313	1133.60807	-0.77559	-0.00044039	0.16634	9.4447E-05	-0.60925	-0.00034594	567.8113526804318	56.121	1.0188	56.121	55.822	56.841	0					74	28	4	0	0	0	0.015032	3	6232	6232;6242;6254		190.26	77.851	1	6139900			32926	3443	22665	22709	37832;37833;37834	37832					0.04661397160452907
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.8112182617188	2	567.811313	1133.60807	-0.54902	-0.00031174	0.016428	9.328E-06	-0.5326	-0.00030241	567.8112798680178	56.239	1.1068	56.083	55.778	56.885	-0.15602					77	30	4	0	0	0	0.014454	3	6221	6221;6230;6244		200.16	83.253	1	6549100			32927	3443	22665	22709	37835;37836;37837	37835					0.04661397160452907
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.8114624023438	2	567.811313	1133.60807	-1.5442	-0.0008768	1.1026	0.00062609	-0.44153	-0.0002507	567.8117630268946	55.847	1.1639	55.945	55.523	56.686	0.097897					100	31	6	0	0	0	0.013065	3	6120	6108;6120;6134		171.53	64.522	1	6035100			32928	3443	22665	22709	37838;37839;37840	37839					0.04661397160452907
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.811279296875	2	567.811313	1133.60807	-0.46443	-0.00026371	0.57445	0.00032618	0.11002	6.2471E-05	567.8114601039409	56.187	0.59342	56.03	55.82	56.413	-0.15656					33	14	3	0	0	0	0.20652	2	6079	6079;6091		88.177	24.643	1	1904400			32929	3443	22665	22709	37841;37842	37841					0.04661397160452907
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8109130859375	2	567.811313	1133.60807	0.24751	0.00014054	-0.33761	-0.0001917	-0.090106	-5.1163E-05	567.8110587347411	56.275	0.57921	56.059	55.772	56.351	-0.21607					36	14	3	0	0	0	0.03201	2	6085	6085;6095		139.97	46.775	1	1874100			32930	3443	22665	22709	37843;37844	37843					0.04661397160452907
KLQELNYNL	9	Unmodified	_KLQELNYNL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.8111572265625	2	567.811313	1133.60807	-0.5521	-0.00031349	0.81199	0.00046106	0.25989	0.00014757	567.8116205878289	56.279	0.54416	56.063	55.851	56.395	-0.21551					31	13	3	0	0	0	0.034407	2	6079	6079;6089		138.06	55.312	1	1772900			32931	3443	22665	22709	37845;37846	37845					0.04661397160452907
KLQEQLAQL	9	Unmodified	_KLQEQLAQL_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.8134155273438	2	535.813856	1069.61316	-0.38326	-0.00020536	-0.65492	-0.00035092	-1.0382	-0.00055627	535.8136472204064	51.75	1.0821	51.75	51.431	52.513	0					64	29	4	0	0	0	0.013337	3	5507	5507;5517;5531		185.55	41.663	1	5122800			32932	9336	22666	22710	37847;37848;37849	37847					0.08113701023080466
KLQEQLAQL	9	Unmodified	_KLQEQLAQL_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.8136596679688	2	535.813856	1069.61316	-0.90326	-0.00048398	-0.18093	-9.6947E-05	-1.0842	-0.00058092	535.8139069665931	51.909	0.92948	51.762	51.477	52.406	-0.14735					58	25	4	0	0	0	0.013337	2	5505	5505;5517		176.44	27.458	1	6294100			32933	9336	22666	22710	37850;37851	37850					0.08113701023080466
KLQEQLAQL	9	Unmodified	_KLQEQLAQL_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.8135375976562	2	535.813856	1069.61316	-1.5767	-0.0008448	0.43715	0.00023423	-1.1395	-0.00061057	535.8142400021336	51.641	0.82389	51.728	51.411	52.235	0.087006					66	22	5	0	0	0	0.013337	3	5417	5417;5429;5444		176.44	38.148	1	5359000			32934	9336	22666	22710	37852;37853;37854	37852					0.08113701023080466
KLQEQLAQL	9	Unmodified	_KLQEQLAQL_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.813856	1069.61316	-2.5254	-0.0013532	2.302	0.0012335	-0.22339	-0.0001197	535.8151107487495	52.047	0.28804	51.777	51.656	51.944	-0.26903	0.023007	0.0026739	NaN	176.44	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134760			32935	9336	22666	22710							0.08113701023080466
KLQEVGQVSV	10	Unmodified	_KLQEVGQVSV_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ITGAV|p.G561Dfs*2|1|0.27|ENSG00000138448|chr2:186656358-186656358|G/-|frameshift_variant	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8110961914062	2	543.811313	1085.60807	-0.89595	-0.00048723	0.39402	0.00021427	-0.50193	-0.00027296	543.8113666536657	45.994	0.54984	46.046	45.758	46.308	0.051399					48	15	4	0	0	0	0.07314	1	4454	4454		142.36	49.218	1	2616600			32936	5244	22667	22711	37855	37855					0.06869397160471635
KLQFEREVL	9	Unmodified	_KLQFEREVL_					0	0	0		ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.8218994140625	2	581.334956	1160.65536	-0.51018	-0.00029658	0.53145	0.00030895	0.021276	1.2368E-05	581.3352049513892	64.871	0.26002	64.908	64.707	64.967	0.037384					9	6	2	0	0	0	0.024457	1	7556	7556		21.96	0	1	81060			32937	6221	22668	22712	37856	37856					0.08145676431468019
KLQGHFLDVII	11	Unmodified	_KLQGHFLDVII_					0	0	0			REV__USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	REV__USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8826293945312	2	641.87953	1281.74451	1.496	0.00096027	2.9831	0.0019148	4.4792	0.0028751	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	0.95882	3	12246	12125;12187;12246		45.972	8.9426	1	2979200	+		32938	37771	22669	22713	37857;37858;37859	37859					0.11490511390979918
KLQGHFLDVII	11	Unmodified	_KLQGHFLDVII_					0	0	0			REV__USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	REV__USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8826904296875	2	641.87953	1281.74451	0.89146	0.00057221	3.5954	0.0023078	4.4869	0.00288	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.90725	2	12150	12150;12212		51.193	9.7661	1	2810000	+		32939	37771	22669	22713	37860;37861	37860					0.11490511390979918
KLQGHFLDVII	11	Unmodified	_KLQGHFLDVII_					0	0	0			REV__USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	REV__USP6|p.R686K|1|0.29|ENSG00000129204|chr17:5145469-5145469|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.882568359375	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	0.96599	1	11866	11866		44.377	1.981	1	3421300	+		32940	37771	22669	22713	37862	37862					0.11490511390979918
KLQGYLLN	8	Unmodified	_KLQGYLLN_					0	0	0			REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2493896484375	2	474.779285	947.544017	-0.70139	-0.00033301	1.9386	0.00092039	1.2372	0.00058738	474.77995068993806	48.882	1.1348	48.954	48.593	49.728	0.07172					81	30	4	0	0	0	0.027866	1	5048	5048		18.324	0	1	1361300	+		32941	32120	22670	22714	37863	37863					0.06814661794180665
KLQKETNKL	9	Unmodified	_KLQKETNKL_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3344116210938	2	551.334956	1100.65536	1.6408	0.00090461	-1.6685	-0.00091988	-0.027698	-1.5271E-05	551.3338920497297	19.338	0.39659	19.105	18.928	19.325	-0.23345					17	7	3	0	0	0	0.31037	1	387	387		74.255	2.3776	1	246940	+		32942	19687	22671	22715	37864	37864					0.1090567643148006
KLQKETNKL	9	Unmodified	_KLQKETNKL_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.334956	1100.65536	0.31015	0.00017099	-0.37503	-0.00020677	-0.064881	-3.5771E-05	551.3345999901164	19.248	0.39709	19.088	18.885	19.282	-0.16079	-0.03104	0.00034804	NaN	74.255	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237790	+		32943	19687	22671	22715							0.1090567643148006
KLQKETNKL	9	Unmodified	_KLQKETNKL_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	551.334956	1100.65536	0.66783	0.0003682	-0.44737	-0.00024665	0.22046	0.00012155	551.3345960649123	19.363	0.44745	19.163	18.958	19.405	-0.2001	0.044631	0.00026827	NaN	74.255	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205190	+		32944	19687	22671	22715							0.1090567643148006
KLQKETNKL	9	Unmodified	_KLQKETNKL_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	551.334956	1100.65536	1.6408	0.00090461	-1.6685	-0.00091988	-0.027698	-1.5271E-05	551.3338920497297	19.338	0.39659	19.105	18.928	19.325	-0.23345	-0.013591	-0.0010782	NaN	74.255	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246940	+		32945	19687	22671	22715							0.1090567643148006
KLQKKADI	8	Unmodified	_KLQKKADI_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3289489746094	2	472.300384	942.586216	0.48926	0.00023108	-0.41778	-0.00019732	0.071482	3.3761E-05	472.29993123640185	23.16	0.74588	22.958	22.407	23.153	-0.20193					22	15	3	0	0	0	0.027866	1	832	832		38.806	8.3025	1	57523			32946	1041	22672	22716	37865	37865					0.112626372025602
KLQKKADI	8	Unmodified	_KLQKKADI_					0	0	0		nc|ENSG00000036549|Q8IYH5-3|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.300384	942.586216	-0.31206	-0.00014738	0.26044	0.000123	-0.051619	-2.438E-05	472.30037282298866	23.041	0.55271	22.856	22.554	23.107	-0.18539	-0.050922	0.00038485	NaN	30.504	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51575			32947	1041	22672	22716							0.112626372025602
KLQKPAVR	8	Unmodified	_KLQKPAVR_					0	0	0		ENST00000520776.5_1_17:45405719-45473360:+|nuORF;nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2959289550781	2	470.308544	938.602535	0.45406	0.00021355	-1.4027	-0.00065969	-0.94861	-0.00044614	470.3077945956494	18.744	0.29304	18.612	18.401	18.694	-0.13147					9	5	3	0	0	0	0.027866	1	325	325		24.203	14.732	1	18888			32948	8840	22673	22717	37866	37866					0.13077763159310507
KLQKPAVR	8	Unmodified	_KLQKPAVR_					0	0	0		ENST00000520776.5_1_17:45405719-45473360:+|nuORF;nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	470.308544	938.602535	0.66991	0.00031506	-1.406	-0.00066126	-0.73609	-0.00034619	470.30772420215527	18.987	0.34624	18.826	18.738	19.084	-0.1608	0.077846	0.00017304	NaN	24.203	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19435			32949	8840	22673	22717							0.13077763159310507
KLQKPAVR	8	Unmodified	_KLQKPAVR_					0	0	0		ENST00000520776.5_1_17:45405719-45473360:+|nuORF;nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	ENST00000520776.5_1_17:45405719-45473360:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.308544	938.602535	0.70458	0.00033137	-0.69277	-0.00032582	0.011803	5.5512E-06	470.30793236918885	19.083	0.29586	18.88	18.708	19.004	-0.20371	0.13097	0.00084392	NaN	24.203	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31139			32950	8840	22673	22717							0.13077763159310507
KLQKQAQTQTT	11	Unmodified	_KLQKQAQTQTT_					0	0	0		CIZ1|p.S350T|1|0.39|ENSG00000148337|chr9:128179159-128179159|A/T|missense_variant	CIZ1|p.S350T|1|0.39|ENSG00000148337|chr9:128179159-128179159|A/T|missense_variant	CIZ1|p.S350T|1|0.39|ENSG00000148337|chr9:128179159-128179159|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.73455810546875	3	425.573614	1273.69901	-0.8243	-0.0003508	4.2679	0.0018163	3.4436	0.0014655	425.5751255554184	37.574	0.63378	37.511	37.268	37.902	-0.063385					36	17	3	0	0	0	0.024762	1	3023	3023		16.53	0	1	342490			32951	448	22674	22718	37867	37867					0.07311241137927027
KLQLIIHA	8	Unmodified	_KLQLIIHA_					0	0	0		AVL9|p.T138I|1|0.12|ENSG00000105778|chr7:32551374-32551374|C/T|missense_variant	AVL9|p.T138I|1|0.12|ENSG00000105778|chr7:32551374-32551374|C/T|missense_variant	AVL9|p.T138I|1|0.12|ENSG00000105778|chr7:32551374-32551374|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.2889099121094	2	468.30547	934.596387	-0.7529	-0.00035259	0.27955	0.00013091	-0.47335	-0.00022167	468.3054726720485	48.845	0.4856	48.745	48.544	49.029	-0.1008					21	12	2	0	0	0	0.027866	1	4849	4849		19.36	0	1	470850			32952	170	22675	22719	37868	37868					0.12647244927791235
KLQLKALDTVL	11	Unmodified	_KLQLKALDTVL_					0	0	0		ENST00000533445.1_1_11:4076769-4103426:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	ENST00000533445.1_1_11:4076769-4103426:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3927612304688	2	621.395013	1240.77547	0.47212	0.00029337	-3.7569	-0.0023345	-3.2847	-0.0020411	621.3926288383752	103.41	0.93773	103.28	103.02	103.96	-0.12723					48	21	4	0	0	0	1.0017	1	12861	12861		36.447	2.2742	1	622120			32953	7672	22676	22720	37869	37869					0.16471664705204603
KLQNIFLGL	9	Unmodified	_KLQNIFLGL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.299560546875	2	523.32386	1044.63317	0.20609	0.00010785	-4.2167	-0.0022067	-4.0106	-0.0020988	523.3209022762293	76.552	0.49078	76.564	76.244	76.735	0.011642					19	11	2	0	0	0	0.024205	1	9366	9366		63.306	17.354	1	340650			32954	18451	22677	22721	37870	37870					0.1126349675369056
KLQPRENL	8	Unmodified	_KLQPRENL_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000476923.1_1_7:92140242-92143269:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2923278808594	2	499.293091	996.571629	-0.11526	-5.755E-05	0.14018	6.9991E-05	0.024916	1.2441E-05	499.29311566896223	47.471	1.3694	47.471	47.216	48.585	0					69	40	4	0	0	0	0.71063	1	4780	4780		66.429	0	1	5179800			32955	4271	22678	22722	37871	37871					0.07320565054419603
KLQPRENL	8	Unmodified	_KLQPRENL_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000476923.1_1_7:92140242-92143269:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.2928771972656	2	499.293091	996.571629	-0.030015	-1.4986E-05	0.0035728	1.7839E-06	-0.026442	-1.3202E-05	499.29303580504865	47.633	0.62778	47.48	47.231	47.858	-0.15301					48	18	4	0	0	0	0.93437	1	4773	4773		47.657	5.2612	1	5029800			32956	4271	22678	22722	37872	37872					0.07320565054419603
KLQPRENL	8	Unmodified	_KLQPRENL_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000476923.1_1_7:92140242-92143269:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.2922668457031	2	499.293091	996.571629	-0.78868	-0.00039378	0.92974	0.00046421	0.14106	7.0431E-05	499.29348223315935	47.412	1.3318	47.471	47.214	48.546	0.059097					67	38	4	0	0	0	0.83003	1	4698	4698		56.721	5.3856	1	5181800			32957	4271	22678	22722	37873	37873					0.07320565054419603
KLQPVPVFII	10	Unmodified	_KLQPVPVFII_					0	0	0			REV__ENST00000479123.1_1_2:3623223-3624265:+|nuORF	REV__ENST00000479123.1_1_2:3623223-3624265:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2981567382812	2	577.37081	1152.72707	-0.2255	-0.0001302	1.6764	0.00096792	1.4509	0.00083772	577.3717592418808	92.712	0.12482	92.571	92.495	92.62	-0.14131					4	2	2	0	0	0	0.03519	1	11378	11378		17.365	5.1581	1	18757	+		32958	26611	22679	22723	37874	37874					0.1568121585598874
KLQQQLATL	9	Unmodified	_KLQQQLATL_					0	0	0			REV__TOP1|p.K587_T597del|1|0.1|ENSG00000198900|chr20:41116329-41116361|AAGGTATTCCGTACATACAATGCCTCCATCACG/-|inframe_deletion	REV__TOP1|p.K587_T597del|1|0.1|ENSG00000198900|chr20:41116329-41116361|AAGGTATTCCGTACATACAATGCCTCCATCACG/-|inframe_deletion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2446899414062	2	521.816399	1041.61824	-0.22152	-0.00011559	-0.53783	-0.00028065	-0.75935	-0.00039624	521.8159059302592	50.631	0.33747	50.482	50.256	50.594	-0.14916					21	9	3	0	0	0	0.024344	1	5303	5303		30.318	5.7985	1	528180	+		32959	37719	22680	22724	37875	37875					0.09910004885705348
KLQQTEAELRK	11	Unmodified	_KLQQTEAELRK_					0	0	0		ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.20831298828125	3	448.592898	1342.75686	-0.31804	-0.00014267	0.85676	0.00038434	0.53872	0.00024166	448.59323811414015	31.855	0.28297	31.924	31.726	32.009	0.06896					11	6	2	0	0	0	0.024746	1	2108	2108		26.75	16.163	1	61911			32960	10341	22681	22725	37876	37876					0.09919503063338198
KLQSERLR	8	Unmodified	_KLQSERLR_					0	0	0			REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.8321533203125	2	515.311815	1028.60908	-0.022742	-1.1719E-05	1.3172	0.00067879	1.2945	0.00066707	515.3115757441836	18.045	0.2978	17.838	17.614	17.912	-0.20669					6	5	2	0	0	0	0.027866	1	250	250		17.365	0	1	20852	+		32961	21723	22682	22726	37877	37877					0.09591656320026232
KLQTWSSF	8	Unmodified	_KLQTWSSF_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80078125	2	498.761092	995.507631	-0.4477	-0.0002233	-3.543	-0.0017671	-3.9907	-0.0019904	498.7591616795855	31.563	1.0764	31.563	30.634	31.71	0					30	25	2	0	0	0	0.027866	1	2114	2114		73.975	13.681	1	48839			32962	10277	22683	22727	37878	37878					0.009697848974724366
KLQVLGTN	8	Unmodified	_KLQVLGTN_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2117004394531	2	436.763635	871.512717	0.19668	8.5901E-05	0.05238	2.2878E-05	0.24906	0.00010878	436.7634905809323	42.787	0.75762	42.648	42.379	43.137	-0.13929					53	20	4	0	0	0	0.027866	1	3951	3951		35.618	5.1146	1	2524700			32963	4586	22684	22728	37879	37879					0.07182088760100669
KLQVLTVA	8	Unmodified	_KLQVLTVA_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.27386474609375	2	436.284203	870.553853	-0.36373	-0.00015869	0.60679	0.00026473	0.24306	0.00010604	436.2843716194456	53.182	0.88341	53.035	52.682	53.566	-0.14723					53	23	4	0	0	0	0.027866	1	5691	5691		38.806	1.647	1	2019800	+		32964	21708	22685	22729	37880	37880					0.11339849799560398
KLQVRTNPN	9	Unmodified	_KLQVRTNPN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3193969726562	2	535.309272	1068.60399	-0.95429	-0.00051084	0.013755	7.363E-06	-0.94053	-0.00050348	535.3088529772369	33.519	0.31177	33.519	33.388	33.7	0					14	8	2	0	0	0	0.024539	1	2450	2450		27.882	1.1893	1	64022	+		32965	25017	22686	22730	37881	37881					0.07243352457408037
KLQWDEEVE	9	Unmodified	_KLQWDEEVE_					0	0	0			REV__DNAJB8|p.G213W|1|0.25|ENSG00000179407|chr3:128462609-128462609|C/A|missense_variant	REV__DNAJB8|p.G213W|1|0.25|ENSG00000179407|chr3:128462609-128462609|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.330322265625	2	588.282586	1174.55062	-1.1474	-0.00067502	0.86317	0.00050779	-0.28427	-0.00016723	588.2836076038946	41.821	0.22569	41.589	41.469	41.695	-0.23186					11	5	3	0	0	0	0.024457	1	3715	3715		37.159	0	1	125980	+		32966	19693	22687	22731	37882	37882					-0.02967489835782544
KLRAEVSAKKR	11	Unmodified	_KLRAEVSAKKR_					0	0	0			REV__ENSG00000180104|ENST00000512944|EXOC3	REV__ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	643.4058837890625	2	643.406778	1284.799	-0.39062	-0.00025132	-0.084658	-5.447E-05	-0.47527	-0.00030579	643.4067111550588	104.34	0.57573	104.21	104.02	104.6	-0.12927					54	17	4	0	0	0	1.0392	1	12991	12991		28.081	2.5074	1	2017700	+		32967	27315	22688	22732	37883	37883					0.16799523262397997
KLRALLEPK	9	Unmodified	_KLRALLEPK_					0	0	0			REV__ELL2|p.Q229K|1|0.1|ENSG00000118985|chr5:95906579-95906579|G/T|missense_variant	REV__ELL2|p.Q229K|1|0.1|ENSG00000118985|chr5:95906579-95906579|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3311157226562	2	534.350409	1066.68626	-1.6298	-0.00087087	0.2845	0.00015202	-1.3453	-0.00071885	534.3506063802827	44.522	0.43059	44.377	44.131	44.561	-0.14471					14	12	2	0	0	0	0.024288	1	4208	4208		52.937	17.318	1	87524	+		32968	19744	22689	22733	37884	37884					0.1555887453635023
KLRCARSA	8	Unmodified	_KLRCARSA_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.7264709472656	2	452.760904	903.507254	-0.031939	-1.4461E-05	-2.4563	-0.0011121	-2.4882	-0.0011266	452.7589168207136	23.225	1.2003	23.225	22.665	23.866	0					58	27	3	0	0	0	0.027866	1	969	969		23.042	2.0956	1	76969	+		32969	25757	22690	22734	37885	37885					0.05164086696618142
KLREELRE	8	Unmodified	_KLREELRE_					0	0	0		ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2959594726562	2	536.809105	1071.60366	-1.7358	-0.00093179	0.54839	0.00029438	-1.1874	-0.00063741	536.809436001196	38.127	0.58458	38.127	37.735	38.319	0					48	17	5	0	0	0	0.027866	1	3115	3115		58.782	18.209	1	1503900			32970	7806	22691	22735	37886	37886					0.07071932737562747
KLREELRE	8	Unmodified	_KLREELRE_					0	0	0		ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2957153320312	2	536.809105	1071.60366	-2.2478	-0.0012067	1.2321	0.00066139	-1.0157	-0.00054526	536.8097255558927	38.219	0.47678	38.247	37.952	38.429	0.027275					24	13	2	0	0	0	0.027866	1	3084	3084		40.778	5.1599	1	1249600			32971	7806	22691	22735	37887	37887					0.07071932737562747
KLREELRE	8	Unmodified	_KLREELRE_					0	0	0		ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.809105	1071.60366	-1.4975	-0.00080389	0.6463	0.00034694	-0.85123	-0.00045695	536.8093820178794	38.048	0.47544	37.966	37.706	38.182	-0.082516	-0.14766	-4.2559E-05	NaN	58.782	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1453900			32972	7806	22691	22735							0.07071932737562747
KLRGKTLW	8	Unmodified	_KLRGKTLW_					0	0	0			REV__ENST00000439887.6_1_16:11981587-11984988:-|nuORF	REV__ENST00000439887.6_1_16:11981587-11984988:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.292236328125	2	501.316369	1000.61818	-0.85227	-0.00042726	3.1957	0.001602	2.3434	0.0011748	501.31793891562353	57.548	0.48116	57.314	57.061	57.543	-0.23363					24	12	3	0	0	0	0.027866	1	6249	6249		82.305	11.009	1	179290	+		32973	32516	22692	22736	37888	37888					0.11790049676358194
KLRGPMKE	8	Unmodified	_KLRGPMKE_					0	0	0		ENST00000396355.5_1_16:15818353-15818767:+|nuORF	ENST00000396355.5_1_16:15818353-15818767:+|nuORF	ENST00000396355.5_1_16:15818353-15818767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.781982421875	2	479.778762	957.542971	-0.0033779	-1.6207E-06	3.7326	0.0017908	3.7292	0.0017892	479.7806073089631	21.941	1.1277	21.941	21.584	22.711	0					44	23	2	0	0	0	0.83003	1	725	725		56.721	0.28726	1	1370400			32974	13551	22693	22737	37889	37889					0.06250124153621073
KLRGRWVK	8	Unmodified	_KLRGRWVK_					0	0	0			REV__KCNQ3|p.G186V|1|0.14|ENSG00000184156|chr8:132184288-132184288|C/A|missense_variant	REV__KCNQ3|p.G186V|1|0.14|ENSG00000184156|chr8:132184288-132184288|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2642211914062	2	521.83526	1041.65597	-0.43025	-0.00022452	-2.6132	-0.0013637	-3.0434	-0.0015882	521.8337436453216	55.963	0.67391	55.963	55.715	56.388	0					21	18	2	0	0	0	0.027866	1	6195	6195		18.324	0	1	242850	+		32975	36174	22694	22738	37890	37890					0.1368056066180543
KLRHKKRAVK	10	Unmodified	_KLRHKKRAVK_					0	0	0		ENST00000380637.7_1_21:40834409-40883616:+|nuORF;ENST00000423596.5_1_21:40834466-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	632.4300537109375	2	632.427848	1262.84114	0.76893	0.00048629	2.154	0.0013622	2.9229	0.0018485	632.4288761442895	107.46	0.11405	107.46	107.39	107.51	-0.003479					7	3	3	0	0	0	1.0994	1	13754	13754		10.265	0.5596	1	3705400			32976	13315	22695	22739	37891	37891					0.22023543461432382
KLRHRRKKVEV	11	Unmodified	_KLRHRRKKVEV_					0	0	0			REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.77630615234375	3	483.647671	1447.92118	-0.1687	-8.1593E-05	-2.3572	-0.00114	-2.5259	-0.0012216	483.6464068038257	48.563	2.2348	48.563	48.277	50.512	0					206	63	5	0	0	0	0.024873	1	5147	5147		9.6461	1.2389	1	3404600	+		32977	22601	22696	22740	37892	37892					0.2151398506462101
KLRHRRKKVEV	11	Unmodified	_KLRHRRKKVEV_					0	0	0			REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2535400390625	3	483.647671	1447.92118	-0.19851	-9.6008E-05	-1.5773	-0.00076284	-1.7758	-0.00085885	483.64674378298963	52.593	0.88534	52.593	51.942	52.827	0					32	22	2	0	0	0	0.02486	1	5611	5611		12.957	6.9564	1	203940	+		32978	22601	22696	22740	37893	37893					0.2151398506462101
KLRHRRKKVEV	11	Unmodified	_KLRHRRKKVEV_					0	0	0			REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.77435302734375	3	483.647671	1447.92118	-0.33805	-0.0001635	-2.2308	-0.0010789	-2.5688	-0.0012424	483.64649333922705	48.813	2.6288	48.66	48.125	50.754	-0.15277					239	74	4	0	0	0	0.02486	1	5152	5152		12.957	7.2587	1	2755200	+		32979	22601	22696	22740	37894	37894					0.2151398506462101
KLRHRRKKVEV	11	Unmodified	_KLRHRRKKVEV_					0	0	0			REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2532653808594	3	483.647671	1447.92118	-0.77039	-0.0003726	-1.8637	-0.00090135	-2.634	-0.001274	483.64681886224355	52.096	0.99039	52.188	51.72	52.71	0.091938					51	25	3	0	0	0	0.024834	1	5531	5531		12.957	0	1	255080	+		32980	22601	22696	22740	37895	37895					0.2151398506462101
KLRHRRKKVEV	11	Unmodified	_KLRHRRKKVEV_					0	0	0			REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7784118652344	3	483.647671	1447.92118	-0.9135	-0.00044181	-1.5893	-0.00076866	-2.5028	-0.0012105	483.6467899572659	48.449	2.5391	48.515	48.191	50.73	0.066795					234	71	5	0	0	0	0.024828	1	5071	5071		5.6988	2.2901	1	2943000	+		32981	22601	22696	22740	37896	37896					0.2151398506462101
KLRHRRKKVEV	11	Unmodified	_KLRHRRKKVEV_					0	0	0			REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	REV__ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.6460876464844	3	483.647671	1447.92118	0.12019	5.8129E-05	-2.8451	-0.001376	-2.7249	-0.0013179	483.64619488951445	48.338	1.7392	48.151	47.825	49.564	-0.18684					159	46	5	0	0	0	1.1135	1	4776	4776		4.8861	0.54733	1	3289400	+		32982	22601	22696	22740	37897	37897					0.2151398506462101
KLRIRTRA	8	Unmodified	_KLRIRTRA_					0	0	0			REV__ENST00000479449.1_1_3:49084597-49094464:-|nuORF	REV__ENST00000479449.1_1_3:49084597-49094464:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3030700683594	2	507.338167	1012.66178	-0.22784	-0.00011559	2.2077	0.00112	1.9798	0.0010045	507.3388826201825	47.017	0.32854	47.017	46.852	47.181	0					15	8	2	0	0	0	0.027866	1	4667	4667		23.042	3.0457	1	109220	+		32983	33400	22697	22741	37898	37898					0.15595659173504828
KLRKLAKEG	9	Unmodified	_KLRKLAKEG_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.8399047851562	2	521.840208	1041.66586	-0.87751	-0.00045792	0.64593	0.00033707	-0.23157	-0.00012084	521.8403541908326	25.922	0.49038	25.686	25.425	25.916	-0.23603					27	11	3	0	0	0	0.96906	1	1280	1280		26.693	1.1189	1	755250	+		32984	24520	22698	22742	37899	37899					0.14669703876552376
KLRKLSAR	8	Unmodified	_KLRKLSAR_					0	0	0			REV__nc|ENSG00000164347|Q969S9-2|GFM2	REV__nc|ENSG00000164347|Q969S9-2|GFM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7784729003906	2	486.327268	970.639983	-0.12196	-5.9314E-05	2.8508	0.0013864	2.7289	0.0013271	486.3285282371189	72.673	0.62099	72.673	72.373	72.994	0					26	14	3	0	0	0	0.027866	1	8818	8818		24.203	11.244	1	190750	+		32985	25745	22699	22743	37900	37900					0.15348854424928504
KLRKPKPV	8	Unmodified	_KLRKPKPV_					0	0	0		nc|ENSG00000147526|O75410-7|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;ENST00000425494.1_1_10:37812205-37812634:+|nuORF	nc|ENSG00000147526|O75410-7|TACC1	nc|ENSG00000147526|O75410-7|TACC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.6460876464844	2	483.334562	964.65457	0.088237	4.2648E-05	-0.58024	-0.00028045	-0.492	-0.0002378	483.3341510973164	48.6	0.57605	48.418	48.091	48.667	-0.18206					25	15	2	0	0	0	0.027866	1	4776	4776		3.9852	0	1	251520			32986	18364	22700	22744	37901	37901					0.1708292657307311
KLRKQIKDA	9	Unmodified	_KLRKQIKDA_					0	0	0		nc|ENSG00000031003|Q9NYF5-3|FAM13B;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	nc|ENSG00000031003|Q9NYF5-3|FAM13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8104858398438	2	550.35094	1098.68733	-0.62861	-0.00034596	2.2015	0.0012116	1.5729	0.00086563	550.3519345853862	64.754	0.35136	64.498	64.191	64.542	-0.25563					15	8	2	0	0	0	0.024511	1	7337	7337		25.574	0.12388	1	223980			32987	1011	22701	22745	37902	37902					0.14193088905290097
KLRKRDAK	8	Unmodified	_KLRKRDAK_					0	0	0			REV__ENSG00000189337|ENST00000376030|KAZN	REV__ENSG00000189337|ENST00000376030|KAZN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.30029296875	2	507.830175	1013.6458	-0.10614	-5.39E-05	2.1273	0.0010803	2.0212	0.0010264	507.83112750359254	46.906	1.0849	46.637	46.379	47.463	-0.26939					81	29	4	0	0	0	0.027866	1	4649	4649		20.947	0	1	3211600	+		32988	28113	22702	22746	37903	37903					0.1395195293659981
KLRKRNLPAD	10	Unmodified	_KLRKRNLPAD_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8716430664062	2	605.872571	1209.73059	-0.27427	-0.00016617	-0.55664	-0.00033725	-0.83091	-0.00050343	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	1.1162	1	12289	12289		19.104	0.77911	1	990980			32989	7441	22703	22747	37904	37904					0.13411278682542616
KLRLGGLL	8	Unmodified	_KLRLGGLL_					0	0	0		ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P	ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P	ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7803955078125	2	435.300188	868.585822	-0.5978	-0.00026022	0.14848	6.4635E-05	-0.44932	-0.00019559	435.3001048274133	40.414	0.4128	40.184	39.93	40.343	-0.23021					16	10	2	0	0	0	0.027866	1	3478	3478		33.516	9.3128	1	111460			32990	11081	22704	22748	37905	37905					0.14627262273381803
KLRLLYTL	8	Unmodified	_KLRLLYTL_					0	0	0		ENSG00000147113|ENST00000398000|DIPK2B	ENSG00000147113|ENST00000398000|DIPK2B	ENSG00000147113|ENST00000398000|DIPK2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3075866699219	2	510.334227	1018.6539	0.10896	5.5607E-05	-1.3918	-0.00071028	-1.2828	-0.00065467	510.3339185869059	67.894	0.37344	67.913	67.669	68.042	0.018913					13	9	3	0	0	0	0.027866	1	8055	8055		17.365	0	1	89326			32991	5931	22705	22749	37906	37906					0.1453208713337517
KLRLVDIK	8	Unmodified	_KLRLVDIK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2730712890625	2	492.831852	983.649151	-0.17289	-8.5206E-05	0.34705	0.00017104	0.17416	8.5832E-05	492.8318733761386	22.78	0.32162	22.78	22.572	22.894	0					10	6	2	0	0	0	0.027866	1	806	806		21.96	1.013	1	50225			32992	3717;18209	22706	22750	37907	37907					0.15667202990596252
KLRLVDIK	8	Unmodified	_KLRLVDIK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.831852	983.649151	-0.30197	-0.00014882	-0.10029	-4.9428E-05	-0.40227	-0.00019825	492.8317075374383	22.805	0.32128	22.73	22.554	22.875	-0.075296	-0.041804	-0.00035421	NaN	21.96	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32363			32993	3717;18209	22706	22750							0.15667202990596252
KLRLVDIK	8	Unmodified	_KLRLVDIK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.831852	983.649151	-0.87815	-0.00043278	0.83893	0.00041345	-0.039221	-1.9329E-05	492.8321585551511	22.732	0.41702	22.805	22.607	23.024	0.073956	0.033883	0.00057155	NaN	21.96	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23925			32994	3717;18209	22706	22750							0.15667202990596252
KLRMILIALAT	11	Unmodified	_KLRMILIALAT_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.9000854492188	2	621.901951	1241.78935	0.37707	0.0002345	-2.1701	-0.0013496	-1.793	-0.0011151	621.9004326010249	105.36	0.44228	105.24	105.03	105.48	-0.12444					26	10	3	0	0	0	1.0718	1	13135	13135		19.104	4.2386	1	1613900	+		32995	27155	22707	22751	37908	37908					0.17812618932657642
KLRNDLLNII	10	Unmodified	_KLRNDLLNII_					0	0	0		ENSG00000132604|ENST00000254942|TERF2;nc|ENSG00000132604|Q15554-4|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.56793212890625	3	404.587195	1210.73976	1.8812	0.00076113	3.0688	0.0012416	4.9501	0.0020027	404.5883072464353	41.979	1.4413	42.005	41.636	43.077	0.026012					100	40	4	0	0	0	0.03519	1	3818	3818		37.508	22.815	1	843420			32996	4626	22708	22752	37909	37909					0.14281627248215045
KLRNNEIK	8	Unmodified	_KLRNNEIK_					0	0	0		ENSG00000184108|ENST00000332517|TRIML1	ENSG00000184108|ENST00000332517|TRIML1	ENSG00000184108|ENST00000332517|TRIML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.24163818359375	2	507.806365	1013.59818	1.5811	0.00080288	-0.34248	-0.00017391	1.2386	0.00062897	507.8065581591962	36.525	0.3236	36.327	36.132	36.456	-0.19829					12	7	2	0	0	0	0.027866	1	2832	2832		30.504	21.681	1	68642			32997	9306	22709	22753	37910	37910					0.09192253945741413
KLRNSNLLA	9	Unmodified	_KLRNSNLLA_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2981567382812	2	514.81419	1027.61383	-0.42211	-0.00021731	-1.0608	-0.00054609	-1.4829	-0.0007634	514.8137491066921	34.552	0.66128	34.548	34.261	34.922	-0.0045624					49	16	5	0	0	0	0.024262	1	2621	2621		57.811	8.3697	1	427460			32998	10574	22710	22754	37911	37911					0.10112540462819197
KLRPPHPPL	9	Unmodified	_KLRPPHPPL_					0	0	0			REV__ENST00000543998.1_1_12:124181644-124189091:+|nuORF	REV__ENST00000543998.1_1_12:124181644-124189091:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2734375	2	527.829643	1053.64473	-1.0511	-0.00055479	-0.44443	-0.00023458	-1.4955	-0.00078938	527.8292692997289	92.639	1.0509	92.639	92.294	93.345	0					68	24	4	0	0	0	0.024183	1	11795	11795		50.025	23.228	1	899460	+		32999	34806	22711	22755	37912	37912					0.12005738567700064
KLRQKTSDHIT	11	Unmodified	_KLRQKTSDHIT_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.27923583984375	3	442.921126	1325.74155	-0.51996	-0.0002303	-1.9535	-0.00086523	-2.4734	-0.0010955	443.2544802763007	54.801	0.30019	54.655	54.424	54.724	-0.14609					10	7	2	0	0	0	0.024779	1	5848	5848		27.644	4.266	1	51236	+		33000	23025	22712	22756	37913	37913					0.09170636266185284
KLRQLTAE	8	Unmodified	_KLRQLTAE_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7308349609375	2	479.787641	957.56073	-0.4791	-0.00022987	0.54074	0.00025944	0.061639	2.9574E-05	479.78775089619865	30.925	0.75086	30.925	30.592	31.343	0					46	17	4	0	0	0	0.027866	1	2058	2058		35.618	0	1	789680			33001	5849	22713	22757	37914	37914					0.0802516268013278
KLRQLTAE	8	Unmodified	_KLRQLTAE_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7312316894531	2	479.787641	957.56073	-0.17307	-8.3038E-05	0.099093	4.7543E-05	-0.073979	-3.5494E-05	479.7876262295663	30.888	1.0036	30.9	30.541	31.545	0.011799					48	23	3	0	0	0	0.027866	1	2084	2084		68.787	10.005	1	706610			33002	5849	22713	22757	37915	37915					0.0802516268013278
KLRQLTAE	8	Unmodified	_KLRQLTAE_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	479.787641	957.56073	-0.38998	-0.00018711	0.5717	0.00027429	0.18171	8.7184E-05	479.7877718796668	31.989	0.40315	32.054	31.762	32.165	0.064812					16	9	2	0	0	0	0.027866	1	2132	2132		40.778	11.629	1	155140			33003	5849	22713	22757	37916	37916					0.0802516268013278
KLRRNSLN	8	Unmodified	_KLRRNSLN_					0	0	0			REV__ENSG00000077454|ENST00000310300|LRCH4	REV__ENSG00000077454|ENST00000310300|LRCH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.82135009765625	2	500.804157	999.593761	-0.75088	-0.00037605	-3.1398	-0.0015724	-3.8907	-0.0019485	500.80241914959566	39.619	0.42304	39.642	39.385	39.808	0.023727					20	11	2	0	0	0	0.027866	1	3366	3366		24.203	0	1	194240	+		33004	20592	22714	22758	37917	37917					0.09394789522843894
KLRRSSSK	8	Unmodified	_KLRRSSSK_					0	0	0		nc|ENSG00000166342|Q8TDF5-2|NETO1;ENSG00000166342|ENST00000327305|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.7680358886719	2	481.298707	960.582862	-0.43576	-0.00020973	3.0555	0.0014706	2.6198	0.0012609	481.30005031875373	44.211	0.34988	44.106	43.889	44.239	-0.10468					13	9	2	0	0	0	0.027866	1	4128	4128		29.15	0.89528	1	201990			33005	7544	22715	22759	37918	37918					0.1009938714856844
KLRRSSSK	8	Unmodified	_KLRRSSSK_					0	0	0		nc|ENSG00000166342|Q8TDF5-2|NETO1;ENSG00000166342|ENST00000327305|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7696533203125	2	481.298707	960.582862	-0.80605	-0.00038795	3.6677	0.0017653	2.8617	0.0013773	481.30031707335615	44.299	0.3481	44.08	43.936	44.284	-0.21938					12	9	2	0	0	0	0.027866	1	4133	4133		38.806	5.2906	1	165600			33006	7544	22715	22759	37919	37919					0.1009938714856844
KLRRYAWKKRW	11	Unmodified	_KLRRYAWKKRW_					0	0	0		GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant;ENST00000534823.1_1_11:77991605-78128766:-|nuORF;ENSG00000033327|ENST00000361507|GAB2	GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.986572265625	3	530.987916	1589.94192	-0.36117	-0.00019178	-2.5751	-0.0013673	-2.9362	-0.0015591	530.9851788291793	103.95	1.1244	103.95	103.35	104.48	0.0031357					81	28	5	0	0	0	1.1135	2	13281	13281;13300		3.2113	0.18535	1	138660			33007	17667	22716	22760	37920;37921	37920					0.1705457544426281
KLRRYDETV	9	Unmodified	_KLRRYDETV_					0	0	0			REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	590.3057250976562	2	590.327662	1178.64077	1.4365	0.000848	0.78472	0.00046324	2.2212	0.0013112	590.3278404176991	87.475	0.38113	87.496	87.22	87.601	0.021263					14	8	2	0	0	0	0.024541	1	10944	10944		30.504	7.4612	1	74910	+		33008	32229	22717	22761	37922	37922					0.05859604283318731
KLRSAVCL	8	Unmodified	_KLRSAVCL_					0	0	0			REV__ENST00000540725.5_1_11:62623143-62623200:-|nuORF	REV__ENST00000540725.5_1_11:62623143-62623200:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2249450683594	2	445.26803	888.521507	0.062909	2.8012E-05	-2.557	-0.0011385	-2.4941	-0.0011105	445.26682479967207	30.514	0.45754	30.365	30.099	30.556	-0.14952					14	10	2	0	0	0	0.027866	1	1918	1918		19.36	0	1	37926	+		33009	34755	22718	22762	37923	37923					0.07278739124899403
KLRSEMEQH	9	Unmodified	_KLRSEMEQH_					0	0	0			REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	REV__ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.3181762695312	2	579.290222	1156.56589	-0.33012	-0.00019124	1.1197	0.00064862	0.78955	0.00045738	579.2907211790213	68.011	0.76228	67.777	67.513	68.275	-0.23376					52	18	4	0	0	0	0.024495	1	7866	7866		26.693	3.6504	1	1191700	+		33010	22100	22719	22763	37924	37924					-0.006129015195483589
KLRSGLAI	8	Unmodified	_KLRSGLAI_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3;MLH3|p.E234Wfs*6|1|0.11|ENSG00000119684|chr14:75048949-75048956|CTAAGCTC/-|frameshift_variant	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.22967529296875	2	429.281995	856.549437	0.10324	4.4317E-05	-0.35825	-0.00015379	-0.25501	-0.00010947	429.28166880973436	27.781	0.40858	27.624	27.434	27.842	-0.15664					17	9	2	0	0	0	0.027866	1	1542	1542		12.959	5.7658	1	103450			33011	3753	22720	22764	37925	37925					0.11542385376640141
KLRSIKVST	9	Unmodified	_KLRSIKVST_					0	0	0			REV__nc|ENSG00000186399|I6L899-2|GOLGA8R	REV__nc|ENSG00000186399|I6L899-2|GOLGA8R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8182373046875	2	516.332216	1030.64988	-1.183	-0.00061083	-0.97411	-0.00050297	-2.1571	-0.0011138	516.83281993663	21.576	0.19379	21.363	21.216	21.41	-0.2128					5	3	2	0	0	0	0.024541	1	661	661		23.042	3.6825	1	17940	+		33012	27167	22721	22765	37926	37926					0.13577997639663408
KLRSKQLL	8	Unmodified	_KLRSKQLL_					0	0	0			REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.328857421875	2	493.329476	984.6444	0.44669	0.00022037	-0.61217	-0.000302	-0.16548	-8.1637E-05	493.3290664040318	18.379	0.74051	18.223	18.002	18.742	-0.15637					35	14	4	0	0	0	0.33369	1	299	299		106.42	0	1	651440	+		33013	19440	22722	22766	37927	37927					0.15146318847837392
KLRSTHEVKLA	11	Unmodified	_KLRSTHEVKLA_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.92572021484375	3	427.9261	1280.75647	0.81927	0.00035059	-1.7607	-0.00075346	-0.94146	-0.00040288	427.9253066281615	101.43	0.86444	101.3	101	101.86	-0.13156					50	19	4	0	0	0	1.0718	1	12582	12582		12.433	0.50046	1	681490	+		33014	26146	22723	22767	37928	37928					0.12732128134166487
KLRSTLPE	8	Unmodified	_KLRSTLPE_					0	0	0		nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2;ENST00000553026.5_1_12:30881575-30884349:-|nuORF;ENST00000537553.5_1_12:30873726-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2	nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.28778076171875	2	472.282192	942.549831	1.1469	0.00054167	1.5557	0.00073471	2.7026	0.0012764	472.28188617374735	97.9	1.8457	97.898	97.412	99.257	-0.0020828					55	42	2	0	0	0	0.027866	1	12581	12581		11.511	0	1	203600			33015	3072	22724	22768	37929	37929					0.07625760305847962
KLRSTLPE	8	Unmodified	_KLRSTLPE_					0	0	0		nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2;ENST00000553026.5_1_12:30881575-30884349:-|nuORF;ENST00000537553.5_1_12:30873726-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2	nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.282192	942.549831	0.59125	0.00027924	2.2973	0.001085	2.8885	0.0013642	472.28270933170523	97.813	1.7206	97.813	97.28	99.001	0	-0.042732	0.00021653	NaN	6.7355	59	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182480			33016	3072	22724	22768							0.07625760305847962
KLRTLVFILY	10	Unmodified	_KLRTLVFILY_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5925598144531	3	422.604186	1264.79073	-0.008478	-3.5828E-06	2.2799	0.00096348	2.2714	0.00095989	422.60482437646465	50.058	0.1789	49.907	49.781	49.96	-0.1512					7	4	2	0	0	0	0.03519	1	5170	5170		12.207	0	1	93763	+		33017	21540	22725	22769	37930	37930					0.16892576293093953
KLRVAYGLL	9	Unmodified	_KLRVAYGLL_					0	0	0		ENST00000367097.7_1_6:158850822-158870058:+|nuORF	ENST00000367097.7_1_6:158850822-158870058:+|nuORF	ENST00000367097.7_1_6:158850822-158870058:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8141479492188	2	516.831852	1031.64915	-1.339	-0.00069203	3.1986	0.0016531	1.8596	0.0009611	516.8334313596556	65.036	0.21492	65.036	64.909	65.124	0					9	5	2	0	0	0	0.024487	1	7668	7668		24.203	4.8428	1	192130			33018	12839	22726	22770	37931	37931					0.1345920299061163
KLRVDKAP	8	Unmodified	_KLRVDKAP_					0	0	0		ENSG00000137310|ENST00000376257|TCF19	ENSG00000137310|ENST00000376257|TCF19	ENSG00000137310|ENST00000376257|TCF19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7651672363281	2	463.792727	925.5709	1.0484	0.00048624	-1.6699	-0.0007745	-0.62154	-0.00028826	463.79190993793975	33.043	1.0112	33.1	32.76	33.771	0.056572					59	26	3	0	0	0	0.027866	1	2375	2375		20.947	0	1	1053900			33019	5112	22727	22771	37932	37932					0.10513770405361811
KLRVGDIV	8	Unmodified	_KLRVGDIV_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2510070800781	2	450.287277	898.560001	-0.40837	-0.00018388	0.60688	0.00027327	0.19851	8.9387E-05	450.28733069530745	32.92	0.64511	32.92	32.642	33.287	0					37	16	3	0	0	0	0.027866	1	2363	2363		19.36	0	1	1521700			33020	1386	22728	22772	37933	37933					0.10666368031093043
KLRVLPCAH	9	Unmodified	_KLRVLPCAH_					0	0	0		PPFIA1-RNF167|1|fusion;nc|ENSG00000108523|Q9H6Y7-2|RNF167;ENSG00000108523|ENST00000262482|RNF167	PPFIA1-RNF167|1|fusion	PPFIA1-RNF167|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7930297851562	2	518.807854	1035.60115	0.18382	9.5367E-05	0.82272	0.00042683	1.0065	0.0005222	518.8104831827634	64.151	0.19586	63.958	63.881	64.077	-0.19243					7	4	2	0	0	0	0.024517	1	7277	7277		3.6843	0	1	39423			33021	18984	22729	22773	37934	37934					0.08477805798884219
KLRVRHKR	8	Unmodified	_KLRVRHKR_					0	0	0			REV__ENST00000314393.5_1_8:123965317-123965398:+|nuORF	REV__ENST00000314393.5_1_8:123965317-123965398:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.8109130859375	2	546.864883	1091.71521	-0.83534	-0.00045682	-2.2866	-0.0012505	-3.122	-0.0017073	546.8637590324612	46.58	0.24962	46.632	46.509	46.758	0.051395					8	6	2	0	0	0	0.027866	1	4558	4558		20.482	0	1	72909	+		33022	30242	22730	22774	37935	37935					0.17302456676020483
KLSALDYVLP	10	Unmodified	_KLSALDYVLP_					0	0	0			REV__ENSG00000163481|ENST00000295704|RNF25	REV__ENSG00000163481|ENST00000295704|RNF25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7576904296875	2	559.826432	1117.63831	0.099908	5.5931E-05	-0.78327	-0.0004385	-0.68336	-0.00038256	559.8259403945242	71.444	1.0197	71.169	70.568	71.587	-0.2751					35	23	2	0	0	0	0.03519	1	8382	8382		19.104	0	1	278750	+		33023	25571	22731	22775	37936	37936					0.08419755825661923
KLSARRDLI	9	Unmodified	_KLSARRDLI_					0	0	0		ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENST00000378770.1_1_4:190394307-190396341:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.76904296875	2	536.33529	1070.65603	-0.064552	-3.4622E-05	2.0876	0.0011197	2.0231	0.001085	536.33631018431	86.9	1.3214	86.9	86.085	87.406	0					79	30	3	0	0	0	0.024319	1	10937	10937		47.657	17.34	1	197700			33024	13251	22732	22776	37937	37937					0.12352515871180003
KLSCLRREW	9	Unmodified	_KLSCLRREW_					0	0	0			REV__ENST00000478253.5_1_3:58223629-58242344:+|nuORF	REV__ENST00000478253.5_1_3:58223629-58242344:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.2872924804688	2	595.826775	1189.639	-0.2108	-0.0001256	-2.5309	-0.001508	-2.7417	-0.0016336	595.8253207337774	56.616	0.47224	56.392	56.149	56.621	-0.2248					15	11	2	0	0	0	0.024523	1	6150	6150		29.15	0	1	160640	+		33025	33358	22733	22777	37938	37938					0.05176271993741466
KLSDLQTQL	9	Unmodified	_KLSDLQTQL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2977294921875	2	523.298039	1044.58152	-0.5436	-0.00028447	-1.1571	-0.0006055	-1.7007	-0.00088997	523.2976128933077	51.764	1.6523	51.764	51.212	52.864	0					140	44	5	0	0	0	0.013719	5	5533	5510;5521;5533;5545;5557		168.26	31.99	1	26642000			33026	2451	22734	22778	37939;37940;37941;37942;37943	37941					0.061017082691250835
KLSDLQTQL	9	Unmodified	_KLSDLQTQL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2977905273438	2	523.298039	1044.58152	-0.62686	-0.00032804	-1.0592	-0.00055425	-1.686	-0.00088229	523.2975835347956	52.011	1.7959	51.863	51.336	53.132	-0.14735					115	48	4	0	0	0	0.013719	5	5521	5510;5521;5533;5545;5557		168.26	43.174	1	24060000			33027	2451	22734	22778	37944;37945;37946;37947;37948	37945					0.061017082691250835
KLSDLQTQL	9	Unmodified	_KLSDLQTQL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2981567382812	2	523.298039	1044.58152	-0.98948	-0.00051779	-1.0491	-0.00054898	-2.0386	-0.0010668	523.29775160659	51.773	1.8883	51.86	51.264	53.152	0.087006					123	50	4	0	0	0	0.016249	3	5458	5434;5446;5458		199.89	58.371	1	22616000			33028	2451	22734	22778	37949;37950;37951	37951					0.061017082691250835
KLSDLQTQL	9	Unmodified	_KLSDLQTQL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2976684570312	2	523.298039	1044.58152	-1.7492	-0.00091535	-3.4602	-0.0018107	-5.2094	-0.0027261	523.2950570466779	51.874	1.3508	51.605	51.203	52.553	-0.26904					80	35	4	0	0	0	0.10464	1	5382	5382		109.48	19.109	1	7671500			33029	2451	22734	22778	37952	37952					0.061017082691250835
KLSDNAKLR	9	Unmodified	_KLSDNAKLR_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.8123168945312	2	522.811648	1043.60874	1.5623	0.00081681	-1.9153	-0.0010014	-0.35301	-0.00018456	522.8105476866859	23.18	0.53696	22.989	22.711	23.248	-0.19117					38	11	5	0	0	0	0.72494	1	859	859		44.377	3.599	1	195890	+		33030	21525	22735	22779	37953	37953					0.08868236600164892
KLSDNAKLR	9	Unmodified	_KLSDNAKLR_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.811648	1043.60874	0.020169	1.0545E-05	4.7465	0.0024815	4.7667	0.0024921	522.8165568744708	23.357	0.13449	23.155	23.061	23.195	-0.20193	0.099882	0.0046617	NaN	44.377	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24405	+		33031	21525	22735	22779							0.08868236600164892
KLSDNAKLR	9	Unmodified	_KLSDNAKLR_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.811648	1043.60874	-0.27089	-0.00014162	0.029616	1.5483E-05	-0.24127	-0.00012614	522.811432274795	23.202	0.58334	23.022	22.697	23.281	-0.17989	-0.033066	-0.00027037	NaN	44.377	38	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185060	+		33032	21525	22735	22779							0.08868236600164892
KLSDNAKLR	9	Unmodified	_KLSDNAKLR_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	522.811648	1043.60874	1.5623	0.00081681	-1.9153	-0.0010014	-0.35301	-0.00018456	522.8105476866859	23.18	0.53696	22.989	22.711	23.248	-0.19117	-0.066815	-0.0023041	NaN	44.377	38	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195890	+		33033	21525	22735	22779							0.08868236600164892
KLSDNILKL	9	Unmodified	_KLSDNILKL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.3265991210938	2	522.326599	1042.63865	0.18065	9.4358E-05	-0.58256	-0.00030428	-0.40191	-0.00020993	522.3261884998366	55.337	1.4863	55.337	55.049	56.535	0					75	41	4	0	0	0	0.048057	2	6112	6112;6124		129.42	30.792	1	3069200			33034	1175;38049	22736	22780	37954;37955	37954					0.11903175545512568
KLSDNILKL	9	Unmodified	_KLSDNILKL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3265991210938	2	522.326599	1042.63865	-0.30126	-0.00015736	-0.033077	-1.7277E-05	-0.33434	-0.00017463	522.326494531335	55.451	1.4044	55.295	55.027	56.431	-0.15601					78	38	4	0	0	0	0.031832	2	6101	6101;6112		140.11	29.992	1	3542000			33035	1175;38049	22736	22780	37956;37957	37956					0.11903175545512568
KLSDNILKL	9	Unmodified	_KLSDNILKL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.326171875	2	522.326599	1042.63865	-0.99071	-0.00051747	0.69593	0.0003635	-0.29478	-0.00015397	522.3268250963957	55.066	1.5569	55.164	54.916	56.473	0.098015					81	42	4	0	0	0	0.013442	3	6005	5993;6005;6019		177.3	55.129	1	3691200			33036	1175;38049	22736	22780	37958;37959;37960	37959					0.11903175545512568
KLSEEHQVG	9	Unmodified	_KLSEEHQVG_					0	0	0			REV__ENST00000435590.1_1_21:46097057-46097849:-|nuORF	REV__ENST00000435590.1_1_21:46097057-46097849:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7509765625	2	513.764363	1025.51417	-0.99896	-0.00051323	-2.033	-0.0010445	-3.032	-0.0015577	513.7632275498977	80.239	0.79624	80.261	79.897	80.693	0.021446					33	18	2	0	0	0	0.024354	1	9860	9860		30.504	0	1	355350	+		33037	32439	22737	22781	37961	37961					0.0024367805817746557
KLSEIDVAL	9	Unmodified	_KLSEIDVAL_					0	0	0		nc|ENSG00000115468|Q9BUP0-2|EFHD1;ENSG00000115468|ENST00000264059|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2898864746094	2	494.289682	986.564812	0.43796	0.00021648	-1.2909	-0.00063809	-0.85297	-0.00042162	494.28918296895176	61.433	1.2254	61.433	60.996	62.222	0					106	32	4	0	0	0	0.062622	5	7117	7093;7105;7117;7129;7141		124.08	33.71	1	134240000			33038	3451	22738	22782	37962;37963;37964;37965;37966	37964					0.07099207383191697
KLSEIDVAL	9	Unmodified	_KLSEIDVAL_					0	0	0		nc|ENSG00000115468|Q9BUP0-2|EFHD1;ENSG00000115468|ENST00000264059|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2893981933594	2	494.289682	986.564812	0.17358	8.5799E-05	-0.89967	-0.0004447	-0.72609	-0.0003589	494.28932143356565	61.382	1.259	61.453	61.022	62.281	0.071125					109	33	4	0	0	0	0.03201	6	7016	6983;6992;7004;7016;7028;7040		139.97	38.37	1	96299000			33039	3451	22738	22782	37967;37968;37969;37970;37971;37972	37970					0.07099207383191697
KLSEIDVAL	9	Unmodified	_KLSEIDVAL_					0	0	0		nc|ENSG00000115468|Q9BUP0-2|EFHD1;ENSG00000115468|ENST00000264059|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	nc|ENSG00000115468|Q9BUP0-2|EFHD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	494.289682	986.564812	-0.39887	-0.00019716	0.85592	0.00042307	0.45705	0.00022592	494.2899703136262	61.665	1.1195	61.452	61.125	62.244	-0.21375	0.022662	0.00091104	NaN	139.97	59	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303900			33040	3451	22738	22782							0.07099207383191697
KLSEIPLTL	9	Unmodified	_KLSEIPLTL_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.315185546875	2	507.3157	1012.61685	-0.4837	-0.00024539	-0.23374	-0.00011858	-0.71745	-0.00036397	507.3155579012584	68.859	1.6599	68.859	68.295	69.954	0					108	42	4	0	0	0	0.013293	4	8250	8250;8278;8290;8303		176.09	74.486	1	23697000			33041	866	22739	22783	37973;37974;37975;37976	37973					0.11104370796954299
KLSEIPLTL	9	Unmodified	_KLSEIPLTL_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.3157043457031	2	507.3157	1012.61685	0.24268	0.00012312	-0.87819	-0.00044552	-0.63551	-0.00032241	507.3152387394442	69.209	1.5557	68.916	68.405	69.96	-0.29292					105	39	4	0	0	0	0.014034	3	8315	8291;8303;8315		166.68	46.058	1	23631000			33042	866	22739	22783	37977;37978;37979	37979					0.11104370796954299
KLSEIPLTL	9	Unmodified	_KLSEIPLTL_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.31536865234375	2	507.3157	1012.61685	-0.16219	-8.228E-05	-0.39282	-0.00019928	-0.555	-0.00028156	507.3154706633685	68.94	1.5004	68.955	68.495	69.995	0.015129					111	38	4	0	0	0	0.01388	5	8219	8184;8195;8207;8219;8232		180.87	63.966	1	23208000			33043	866	22739	22783	37980;37981;37982;37983;37984	37983					0.11104370796954299
KLSEIPLTL	9	Unmodified	_KLSEIPLTL_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.3157	1012.61685	-0.31315	-0.00015887	0.4511	0.00022885	0.13794	6.9981E-05	507.3153545869877	69.52	0.41122	69.298	69.103	69.514	-0.22245	0.29063	0.00097804	NaN	176.09	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64553			33044	866	22739	22783							0.11104370796954299
KLSEKLQTL	9	Unmodified	_KLSEKLQTL_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.323486328125	2	530.324057	1058.63356	1.5522	0.00082316	-1.8785	-0.0009962	-0.32629	-0.00017304	530.32298219644	36.686	0.60487	36.476	36.201	36.806	-0.2092					34	14	3	0	0	0	0.37611	1	2873	2873		67.494	0	1	1486400	+		33045	29117	22740	22784	37985	37985					0.10658871682880999
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2816467285156	2	487.281857	972.549162	-0.16084	-7.8375E-05	0.17234	8.3977E-05	0.011497	5.6024E-06	487.28185685956845	57.545	0.93205	57.545	57.227	58.159	0					60	24	5	0	0	0	0.094442	5	6459	6459;6469;6481;6494;6507		112.41	35.093	1	15475000		+	33046	494;577	22741	22785	37986;37987;37988;37989;37990	37986					0.061789208661252815
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2818603515625	2	487.281857	972.549162	0.006976	3.3993E-06	0.033806	1.6473E-05	0.040782	1.9872E-05	487.28178647596076	57.804	0.9593	57.63	57.19	58.149	-0.1749					64	25	4	0	0	0	0.062622	4	6469	6458;6469;6481;6493		124.08	20.023	1	13795000		+	33047	494;577	22741	22785	37991;37992;37993;37994	37992					0.061789208661252815
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.28125	2	487.281857	972.549162	-0.87616	-0.00042694	1.1521	0.00056142	0.27599	0.00013448	487.28229791979885	57.352	0.99529	57.447	57.127	58.122	0.095306					74	26	4	0	0	0	0.020687	4	6383	6360;6371;6383;6394		148.99	38.867	1	14973000		+	33048	494;577	22741	22785	37995;37996;37997;37998	37997					0.061789208661252815
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.281857	972.549162	-0.65346	-0.00031842	0.66938	0.00032618	0.015927	7.7612E-06	487.281916080057	57.693	0.43681	57.515	57.358	57.795	-0.17776	-0.028474	9.1335E-05	NaN	148.99	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124000		+	33049	494;577	22741	22785							0.061789208661252815
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.281857	972.549162	0.10311	5.0242E-05	0.18402	8.9671E-05	0.28713	0.00013991	487.2816194677363	57.717	0.5303	57.527	57.259	57.789	-0.19017	-0.016991	-0.00038168	NaN	148.99	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1322700		+	33050	494;577	22741	22785							0.061789208661252815
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	487.281857	972.549162	-0.18934	-9.2264E-05	0.56094	0.00027333	0.37159	0.00018107	487.28169852203405	57.833	0.50585	57.599	57.274	57.78	-0.23363	0.055302	-1.4354E-05	NaN	148.99	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1367400		+	33051	494;577	22741	22785							0.061789208661252815
KLSEMSVTL	9	Unmodified	_KLSEMSVTL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;ENST00000460788.5_1_2:241656783-241663482:-|nuORF;ENST00000492812.5_1_2:241656783-241664929:-|nuORF;ENST00000465813.1_1_2:241660329-241662073:-|nuORF	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2748718261719	2	504.275718	1006.53688	-0.38019	-0.00019172	4.2609	0.0021487	3.8807	0.001957	504.27543450078576	56.666	1.6489	56.666	56.07	57.719	0					129	45	4	0	0	0	0.079716	2	6333	6333;6346		117.81	49.024	1	5037200			33052	4407	22742	22786	37999;38000	37999					0.03387561131455641
KLSEMSVTL	9	Unmodified	_KLSEMSVTL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;ENST00000460788.5_1_2:241656783-241663482:-|nuORF;ENST00000492812.5_1_2:241656783-241664929:-|nuORF;ENST00000465813.1_1_2:241660329-241662073:-|nuORF	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.27508544921875	2	504.275718	1006.53688	-0.63604	-0.00032074	0.63103	0.00031821	-0.0050074	-2.5251E-06	504.27553991139047	56.788	0.88548	56.623	56.023	56.909	-0.16431					32	24	2	0	0	0	0.03666	1	6317	6317		136.27	45.491	1	5147200			33053	4407	22742	22786	38001	38001					0.03387561131455641
KLSEMSVTL	9	Unmodified	_KLSEMSVTL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;ENST00000460788.5_1_2:241656783-241663482:-|nuORF;ENST00000492812.5_1_2:241656783-241664929:-|nuORF;ENST00000465813.1_1_2:241660329-241662073:-|nuORF	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MSMS	OPSCC_39_ClassI_Rep-3	3	504.27447509765625	2	504.275718	1006.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.425	1	56.523	56.023	57.023	0.097893								0	0	0	0.016409	1	6212	6212		136.27	51.353	1				33054	4407	22742	22786	38002	38002					0.03387561131455641
KLSEMSVTL	9	Unmodified	_KLSEMSVTL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;ENST00000460788.5_1_2:241656783-241663482:-|nuORF;ENST00000492812.5_1_2:241656783-241664929:-|nuORF;ENST00000465813.1_1_2:241660329-241662073:-|nuORF	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MSMS	OPSCC_39_ClassI_Rep-3	3	504.27508544921875	2	504.275718	1006.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.483	1	56.581	56.081	57.081	0.097893								0	0	0	0.048917	1	6222	6222		109.48	27.238	1				33055	4407	22742	22786	38003	38003					0.03387561131455641
KLSEMSVTL	9	Unmodified	_KLSEMSVTL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;ENST00000460788.5_1_2:241656783-241663482:-|nuORF;ENST00000492812.5_1_2:241656783-241664929:-|nuORF;ENST00000465813.1_1_2:241660329-241662073:-|nuORF	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MSMS	OPSCC_39_ClassI_Rep-3	3	504.27496337890625	2	504.275718	1006.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.599	1	56.697	56.197	57.197	0.097893								0	0	0	0.14369	1	6242	6242		82.75	5.9763	1				33056	4407	22742	22786	38004	38004					0.03387561131455641
KLSEQLWTP	9	Unmodified	_KLSEQLWTP_					0	0	0			REV__ENST00000368679.8_1_10:127704627-127704783:-|nuORF	REV__ENST00000368679.8_1_10:127704627-127704783:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2577514648438	2	551.300581	1100.58661	0.069988	3.8585E-05	-1.1559	-0.00063726	-1.0859	-0.00059867	551.8019309242549	20.88	0.19292	20.712	20.591	20.784	-0.16774					5	3	2	0	0	0	0.024541	1	608	608		23.042	3.6825	1	11788	+		33057	31064	22743	22787	38005	38005					0.04034012131751297
KLSESKLKI	9	Unmodified	_KLSESKLKI_					0	0	0		ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2	ENSG00000204130|ENST00000602465|RUFY2	ENSG00000204130|ENST00000602465|RUFY2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3347778320312	2	523.334424	1044.6543	-0.6093	-0.00031887	0.53412	0.00027952	-0.075174	-3.9341E-05	523.3345415348705	27.251	0.97985	27.009	26.701	27.68	-0.24217					50	22	4	0	0	0	0.16638	1	1495	1495		95.815	0	1	1606100			33058	10302	22744	22788	38006	38006					0.1337546206254956
KLSFKKDTFK	10	Unmodified	_KLSFKKDTFK_					0	0	0			REV__nc|ENSG00000224543|A8MWD9|SNRPGP15	REV__nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.880859375	3	414.579929	1240.71796	-0.64829	-0.00026877	-2.402	-0.00099581	-3.0503	-0.0012646	414.57878859242567	29.35	0.34416	29.178	28.981	29.325	-0.17258					13	7	2	0	0	0	0.03519	1	1762	1762		57.149	33.771	1	147770	+		33059	37136	22745	22789	38007	38007					0.10722822499633367
KLSFNEKKL	9	Unmodified	_KLSFNEKKL_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	0.87448	1	10565	10565		34.173	0	1	1711900	+		33060	27166	22746	22790	38008	38008					0.10094577919812764
KLSFQYLPNI	10	Unmodified	_KLSFQYLPNI_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	408.7322082519531	3	408.23253	1221.67576	-0.14231	-5.8096E-05	0.30911	0.00012619	0.1668	6.8093E-05	408.2325419924822	30.401	0.99292	30.401	30.096	31.089	0					57	23	4	0	0	0	0.03519	1	2025	2025		18.531	0	1	1017100	+		33061	19687	22747	22791	38009	38009					0.07378847091285934
KLSGGEKQR	9	Unmodified	_KLSGGEKQR_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7;ABCB7|p.A618T|1|0.14|ENSG00000131269|chrX:75062411-75062411|C/T|missense_variant;ENST00000487380.5_1_2:220074662-220075642:-|nuORF;nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6	nc|ENSG00000131269|O75027-3|ABCB7;nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000131269|O75027-3|ABCB7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7882385253906	2	501.788173	1001.56179	-0.52095	-0.00026141	-0.064713	-3.2472E-05	-0.58567	-0.00029388	501.7881799055232	32.187	0.76791	32.198	31.863	32.63	0.011799					50	19	4	0	0	0	0.67687	1	2192	2192		47.657	1.7054	1	3358600			33062	4509;3478	22748	22792	38010	38010					0.061073770490338575
KLSGKRAL	8	Unmodified	_KLSGKRAL_					0	0	0			REV__nc|ENSG00000164970|Q8IW50-3|FAM219A	REV__nc|ENSG00000164970|Q8IW50-3|FAM219A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.881591796875	2	436.787444	871.560336	-0.73979	-0.00032313	-0.38739	-0.00016921	-1.1272	-0.00049234	436.78679201189357	39.509	0.27956	39.411	39.234	39.514	-0.098755					11	7	2	0	0	0	0.027866	1	3379	3379		16.473	8.2419	1	56667	+		33063	25827	22749	22793	38011	38011					0.11941787750936328
KLSGSDYEL	9	Unmodified	_KLSGSDYEL_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.2525939941406	2	506.253297	1010.49204	-0.04119	-2.0852E-05	-0.42142	-0.00021334	-0.46261	-0.0002342	506.2530025658316	61.463	0.7965	61.463	61.144	61.941	0					50	20	3	0	0	0	0.16468	1	7106	7106		96.19	13.885	1	2981800	+		33064	23446	22750	22794	38012	38012					-0.012785464102535116
KLSGSDYEL	9	Unmodified	_KLSGSDYEL_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.253297	1010.49204	0.23072	0.0001168	-0.76074	-0.00038513	-0.53002	-0.00026833	506.252847355189	61.62	0.966	61.393	61.118	62.084	-0.22663	-0.03015	-5.2112E-05	NaN	96.19	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2990300	+		33065	23446	22750	22794							-0.012785464102535116
KLSGSDYEL	9	Unmodified	_KLSGSDYEL_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.253297	1010.49204	0.27351	0.00013847	-0.7784	-0.00039407	-0.50489	-0.0002556	506.2528217780612	61.343	0.78927	61.414	61.095	61.884	0.071125	-0.0090861	-6.9994E-05	NaN	96.19	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3385700	+		33066	23446	22750	22794							-0.012785464102535116
KLSGTSGR	8	Unmodified	_KLSGTSGR_					0	0	0			REV__ENSG00000076826|ENST00000160298|CAMSAP3	REV__ENSG00000076826|ENST00000160298|CAMSAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.8723449707031	2	403.229959	804.445365	-1.0791	-0.00043514	2.9138	0.0011749	1.8347	0.00073981	403.2327949349032	33.281	0.76117	33.115	32.679	33.44	-0.16565					40	18	3	0	0	0	0.027866	1	2314	2314		7.1934	0	1	61888	+		33067	20573	22751	22795	38013	38013					0.03532058549137673
KLSILENRGVH	11	Unmodified	_KLSILENRGVH_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5925598144531	3	422.582333	1264.72517	-0.010059	-4.2508E-06	-2.0687	-0.00087419	-2.0787	-0.00087844	422.5814391360743	50.114	0.34891	49.963	49.781	50.13	-0.1512					12	9	2	0	0	0	0.02473	1	5170	5170		39.873	17.312	1	255900			33068	4441	22752	22796	38014	38014					0.1033955510006308
KLSKDVLVQ	9	Unmodified	_KLSKDVLVQ_					0	0	0			REV__ENSG00000084774|ENST00000264705|CAD	REV__ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2924194335938	2	515.318774	1028.623	-1.2394	-0.00063869	1.6093	0.00082931	0.36992	0.00019062	515.3193557358567	40.219	0.51813	40.242	39.942	40.46	0.023003					27	13	3	0	0	0	0.024447	1	3479	3479		49.442	31.117	1	433000	+		33069	20743	22753	22797	38015	38015					0.10982889028446152
KLSKIFDE	8	Unmodified	_KLSKIFDE_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7999572753906	2	490.276575	978.538597	0.48615	0.00023835	0.15894	7.7926E-05	0.6451	0.00031628	490.2763773264321	68.542	0.67369	68.3	68.033	68.707	-0.24277					47	16	4	0	0	0	0.027866	1	7909	7909		10.866	0	1	562090	+		33070	24950	22754	22798	38016	38016					0.04846938211710494
KLSKKDTH	8	Unmodified	_KLSKKDTH_					0	0	0			REV__ENSG00000197016|ENST00000330619|ZNF470	REV__ENSG00000197016|ENST00000330619|ZNF470	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	478.779816	955.545079	-0.21734	-0.00010406	0.63151	0.00030235	0.41417	0.0001983	478.77980342502946	26.132	0.66569	26.109	25.82	26.486	-0.023088					38	15	4	0	0	0	0.027866	1	1262	1262		20.947	0	1	1044700	+		33071	28252	22755	22799	38017	38017					0.0655287616308442
KLSKRCATKV	10	Unmodified	_KLSKRCATKV_					0	0	0			REV__AKR1E2|p.E81K|1|0.2|ENSG00000165568|chr10:4833383-4833383|G/A|missense_variant	REV__AKR1E2|p.E81K|1|0.2|ENSG00000165568|chr10:4833383-4833383|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3429565429688	2	567.3448	1132.67505	0.12633	7.1674E-05	-3.1742	-0.0018008	-3.0478	-0.0017292	567.3428553756878	19.856	0.43664	19.695	19.48	19.916	-0.1608					24	8	4	0	0	0	1.1333	1	476	476		28.081	0.19925	1	322360	+		33072	19099	22756	22800	38018	38018					0.11401729170552244
KLSLAAAIIL	10	Unmodified	_KLSLAAAIIL_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8306579589844	2	506.841885	1011.66922	-0.14506	-7.3523E-05	-0.53222	-0.00026975	-0.67728	-0.00034327	506.84150392347215	46.815	0.60133	46.546	46.341	46.943	-0.26939					37	16	3	0	0	0	0.03519	1	4547	4547		19.104	0	1	1707100	+		33073	25074	22757	22801	38019	38019					0.16384953930560187
KLSLISDSD	9	Unmodified	_KLSLISDSD_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2712707519531	2	489.261122	976.507691	2.1704	0.0010619	2.1597	0.0010567	4.3301	0.0021186	489.2619398972547	24.007	0.44583	23.826	23.582	24.028	-0.18089					17	9	3	0	0	0	0.024405	1	989	989		27.882	0	1	130300	+		33074	23500	22758	22802	38020	38020					0.018497401068088948
KLSLPWAL	8	Unmodified	_KLSLPWAL_					0	0	0			REV__ENST00000598463.5_1_19:51305499-51305737:-|nuORF	REV__ENST00000598463.5_1_19:51305499-51305737:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.25689697265625	2	464.286746	926.558939	0.0022826	1.0598E-06	-4.3824	-0.0020347	-4.3801	-0.0020336	464.2847485929123	58.554	1.4098	58.367	57.812	59.222	-0.18705					104	38	4	0	0	0	0.027866	1	6737	6737		40.573	0	1	12941000	+		33075	35820	22759	22803	38021	38021					0.09272153662152505
KLSLQVLN	8	Unmodified	_KLSLQVLN_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000518333.1_1_8:124821116-124824941:+|nuORF	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.7457580566406	2	457.78711	913.559667	0.22663	0.00010375	-0.4969	-0.00022747	-0.27027	-0.00012373	457.7866843559719	26.607	0.41943	26.607	26.447	26.867	0					14	9	2	0	0	0	0.027866	1	1361	1361		37.812	1.3648	1	38171			33076	8673	22760	22804	38022	38022					0.09942948311220334
KLSLRGVE	8	Unmodified	_KLSLRGVE_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2301330566406	2	451.276909	900.539266	0.054469	2.458E-05	-0.088672	-4.0016E-05	-0.034204	-1.5435E-05	451.27685856248445	27.004	0.25122	27.004	26.783	27.034	0					8	5	2	0	0	0	0.027866	1	1415	1415		55.504	9.5523	1	41389	+		33077	23178	22761	22805	38023	38023					0.08501777651417797
KLSNQLLVL	9	Unmodified	_KLSNQLLVL_					0	0	0			REV__ENST00000262345.5_1_1:67787503-67793884:+|nuORF	REV__ENST00000262345.5_1_1:67787503-67793884:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.3291625976562	2	514.329142	1026.64373	0.68398	0.00035179	-0.19557	-0.00010059	0.48841	0.0002512	514.328912407934	70.272	0.71634	69.979	69.467	70.184	-0.29291					42	19	4	0	0	0	0.67687	1	8456	8456		47.657	0	1	2224300	+		33078	29658	22762	22806	38024	38024					0.13147479408144136
KLSPALWFA	9	Unmodified	_KLSPALWFA_					0	0	0		nc|ENSG00000180739|Q9H228-2|S1PR5;ENSG00000180739|ENST00000333430|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.7977905273438	2	516.797478	1031.5804	-0.019928	-1.0299E-05	-0.080768	-4.1741E-05	-0.1007	-5.2039E-05	516.7975206458129	74.687	1.3465	74.411	73.917	75.264	-0.27573					68	31	4	0	0	0	0.20967	1	8807	8807		87.754	31.033	1	1201900			33079	8994	22763	22807	38025	38025					0.06587538690882866
KLSPALWFA	9	Unmodified	_KLSPALWFA_					0	0	0		nc|ENSG00000180739|Q9H228-2|S1PR5;ENSG00000180739|ENST00000333430|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7972412109375	2	516.797478	1031.5804	0.21052	0.0001088	-0.49473	-0.00025568	-0.28421	-0.00014688	516.7972914687879	74.645	1.3085	74.382	73.966	75.275	-0.26326					52	30	3	0	0	0	0.67687	1	8817	8817		47.657	5.2612	1	909750			33080	8994	22763	22807	38026	38026					0.06587538690882866
KLSPGDRVGY	10	Unmodified	_KLSPGDRVGY_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2767333984375	2	546.29583	1090.57711	-1.4188	-0.00077508	1.6479	0.00090022	0.22907	0.00012514	546.2966865865186	29.116	0.52058	28.871	28.709	29.229	-0.24524					16	11	2	0	0	0	0.03519	1	1771	1771		30.504	0	1	53657			33081	882	22764	22808	38027	38027					0.03544243846226891
KLSPLLPSV	9	Unmodified	_KLSPLLPSV_					0	0	0			REV__ENST00000375036.6_2_17:74676527-74676626:-|nuORF	REV__ENST00000375036.6_2_17:74676527-74676626:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.3054504394531	2	477.305136	952.595718	0.032115	1.5329E-05	0.69838	0.00033334	0.7305	0.00034867	477.30511288591657	91.437	0.76231	91.424	91.115	91.878	-0.012383					37	17	3	0	0	0	0.91321	1	11562	11562		31.53	1.0262	1	1404700	+		33082	31316	22765	22809	38028	38028					0.11752405488084605
KLSPSYTPT	9	Unmodified	_KLSPSYTPT_					0	0	0			REV__ENSG00000121440|ENST00000263666|PDZRN3	REV__ENSG00000121440|ENST00000263666|PDZRN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.25555419921875	2	497.266207	992.517862	-0.086078	-4.2803E-05	-1.9857	-0.00098742	-2.0718	-0.0010302	497.26513967877236	71.888	1.0188	71.682	71.007	72.026	-0.20613					49	24	3	0	0	0	0.024354	1	8363	8363		30.504	0	1	765730	+		33083	22595	22766	22810	38029	38029					0.021303478320305658
KLSPYDKL	8	Unmodified	_KLSPYDKL_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2772216796875	2	482.279118	962.543683	-0.3553	-0.00017135	-3.9959	-0.0019272	-4.3512	-0.0020985	482.2771442889716	24.675	0.78823	24.675	24.385	25.173	0					44	17	4	0	0	0	0.38451	1	1106	1106		99.375	11.621	1	1684900			33084	4142	22767	22811	38030	38030					0.060912420743079565
KLSPYDKL	8	Unmodified	_KLSPYDKL_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.27728271484375	2	482.279118	962.543683	-1.1827	-0.0005704	-3.1346	-0.0015118	-4.3174	-0.0020822	482.277530311532	24.698	0.8277	24.651	24.398	25.225	-0.047148					42	18	4	0	0	0	0.47665	1	1101	1101		87.754	0.057861	1	1437500			33085	4142	22767	22811	38031	38031					0.060912420743079565
KLSQDIKES	9	Unmodified	_KLSQDIKES_					0	0	0		nc|ENSG00000169064|A8MT70-3|ZBBX;nc|ENSG00000169064|A8MT70|ZBBX;ENSG00000169064|ENST00000675490|ZBBX	nc|ENSG00000169064|A8MT70-3|ZBBX	nc|ENSG00000169064|A8MT70-3|ZBBX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3033447265625	2	524.287671	1046.56079	-0.022789	-1.1948E-05	-0.23484	-0.00012312	-0.25763	-0.00013507	524.2869585806754	21.023	0.28774	20.846	20.63	20.918	-0.17721					7	5	2	0	0	0	0.024436	1	629	629		38.806	14.603	1	12277			33086	7897	22768	22812	38032	38032					0.039371178894725745
KLSQKIKVWL	10	Unmodified	_KLSQKIKVWL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1;ENST00000560801.5_2_15:31320559-31354823:-|nuORF	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.900390625	2	621.900266	1241.78598	0.37707	0.0002345	0.53999	0.00033582	0.91706	0.00057032	621.9004326010249	105.36	0.44228	105.24	105.03	105.48	-0.12444					26	10	3	0	0	0	1.1096	1	13101	13101		15.642	0.77694	1	1613900			33087	4760	22769	22813	38033	38033					0.1747569215033309
KLSQQSKLE	9	Unmodified	_KLSQQSKLE_					0	0	0		ENSG00000183098|ENST00000377047|GPC6;GPC6|p.D73Y|1|0.27|ENSG00000183098|chr13:93545319-93545319|G/T|missense_variant	ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7716674804688	2	530.803488	1059.59242	0.084166	4.4675E-05	-0.04503	-2.3902E-05	0.039136	2.0774E-05	530.8032081763503	24.572	0.68492	24.65	24.184	24.869	0.078344					22	14	2	0	0	0	0.024025	1	1028	1028		44.377	10.205	1	109460			33088	9200	22770	22814	38034	38034					0.0650111064342127
KLSQQSKLE	9	Unmodified	_KLSQQSKLE_					0	0	0		ENSG00000183098|ENST00000377047|GPC6;GPC6|p.D73Y|1|0.27|ENSG00000183098|chr13:93545319-93545319|G/T|missense_variant	ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.803488	1059.59242	-1.1464	-0.00060851	1.0733	0.0005697	-0.073113	-3.8809E-05	530.8040026743603	24.675	0.40072	24.675	24.429	24.83	0	0.0029369	2.7866E-05	NaN	44.377	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119970			33089	9200	22770	22814							0.0650111064342127
KLSQQVVL	8	Unmodified	_KLSQQVVL_					0	0	0		ENST00000493637.6_1_X:134704384-134704540:+|nuORF	ENST00000493637.6_1_X:134704384-134704540:+|nuORF	ENST00000493637.6_1_X:134704384-134704540:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2454833984375	2	457.78711	913.559667	-0.47148	-0.00021584	0.59829	0.00027389	0.12681	5.8053E-05	457.78723482536435	27.079	0.85132	26.911	26.594	27.445	-0.16816					43	19	3	0	0	0	0.027866	1	1434	1434		27.882	4.8398	1	763590			33090	15508	22771	22815	38035	38035					0.09942948311231703
KLSRIAKLE	9	Unmodified	_KLSRIAKLE_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.31591796875	2	529.340041	1056.66553	-0.088969	-4.7095E-05	-1.0101	-0.00053468	-1.0991	-0.00058177	529.3392743532104	36.403	0.23819	36.186	36.088	36.326	-0.21661					6	5	2	0	0	0	0.024209	1	2863	2863		76.774	14.667	1	55906			33091	3841	22772	22816	38036	38036					0.13946284156691036
KLSRKRKP	8	Unmodified	_KLSRKRKP_					0	0	0			REV__nc|ENSG00000124493|Q14833-5|GRM4	REV__nc|ENSG00000124493|Q14833-5|GRM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	506.840542	1011.66653	-0.1482	-7.5114E-05	2.4016	0.0012172	2.2534	0.0011421	506.84156565250584	46.66	0.54618	46.711	46.441	46.987	0.051395					37	14	4	0	0	0	0.027866	1	4596	4596		33.516	0	1	918480	+		33092	36631	22773	22817	38037	38037					0.16116543316263687
KLSRLEAQL	9	Unmodified	_KLSRLEAQL_					0	0	0			REV__ENST00000576487.5_1_17:7011095-7018009:-|nuORF	REV__ENST00000576487.5_1_17:7011095-7018009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2783813476562	2	529.321848	1056.62914	-0.0039117	-2.0706E-06	3.0048	0.0015905	3.0009	0.0015885	529.3234805007544	69.803	0.41592	69.58	69.348	69.764	-0.22245					21	9	3	0	0	0	0.023655	1	8072	8072		69.628	14.123	1	475720	+		33093	25408	22774	22818	38038	38038					0.10309407260001535
KLSRRVPV	8	Unmodified	_KLSRRVPV_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.79736328125	2	477.813993	953.613434	0.95644	0.000457	1.9651	0.00093895	2.9215	0.0013959	477.81619975354545	96.241	0.21037	96.247	96.186	96.397	0.0065079					6	4	2	0	0	0	0.027866	1	12249	12249		12.959	0	1	42575	+		33094	20523	22775	22819	38039	38039					0.13477165533606694
KLSSLHRENFI	11	Unmodified	_KLSSLHRENFI_					0	0	0		nc|ENSG00000188266|A2RU49-3|HYKK;ENSG00000188266|ENST00000388988|HYKK	nc|ENSG00000188266|A2RU49-3|HYKK	nc|ENSG00000188266|A2RU49-3|HYKK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.27020263671875	3	448.585854	1342.73573	-1.3696	-0.00061438	-1.7868	-0.00080155	-3.1564	-0.0014159	448.58527137276747	21.426	0.39011	21.214	21.02	21.41	-0.2128					10	7	2	0	0	0	0.024816	1	633	633		16.53	0	1	19775			33095	9703	22776	22820	38040	38040					0.07807537754501936
KLSSLLNQA	9	Unmodified	_KLSSLLNQA_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2500305175781	2	487.287474	972.560395	-0.34076	-0.00016605	0.71367	0.00034776	0.37291	0.00018171	487.2874520569634	33.365	1.2463	33.133	32.67	33.916	-0.23107					101	30	5	0	0	0	0.024288	1	2404	2404		44.377	3.599	1	963750	+		33096	32494	22777	22821	38041	38041					0.0730174296027144
KLSSLMKAN	9	Unmodified	_KLSSLMKAN_					0	0	0			REV__WIF1|p.I172Kfs*51|1|0.3|ENSG00000156076|chr12:65068787-65068788|-/TAGCATTT|frameshift_variant	REV__WIF1|p.I172Kfs*51|1|0.3|ENSG00000156076|chr12:65068787-65068788|-/TAGCATTT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2623596191406	2	496.283877	990.553201	-1.1233	-0.00055747	-2.0512	-0.001018	-3.1745	-0.0015754	496.2826490029002	48.712	0.48312	48.611	48.434	48.918	-0.1008					17	12	2	0	0	0	0.024438	1	4840	4840		36.447	2.9312	1	148400	+		33097	37784	22778	22822	38042	38042					0.05754687088199262
KLSSSLLAYLI	11	Unmodified	_KLSSSLLAYLI_					0	0	0			REV__ENSG00000131910|ENST00000254227|NR0B2	REV__ENSG00000131910|ENST00000254227|NR0B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3667602539062	2	604.368464	1206.72238	0.12428	7.5109E-05	-3.0499	-0.0018433	-2.9256	-0.0017682	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.0327	1	12866	12866		14.137	0	1	4482300	+		33098	23244	22779	22823	38043	38043					0.12728286922560983
KLSTGDKLWS	10	Unmodified	_KLSTGDKLWS_					0	0	0			REV__nc|ENSG00000012124|P20273-5|CD22	REV__nc|ENSG00000012124|P20273-5|CD22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.7999267578125	2	567.811313	1133.60807	0.058466	3.3198E-05	-1.2702	-0.00072125	-1.2118	-0.00068805	567.8105018406426	71.185	0.59135	70.928	70.695	71.286	-0.25713					12	5	3	0	0	0	0.03519	1	8337	8337		82.75	8.4954	1	821110	+		33099	19941	22780	22824	38044	38044					0.04661397160452907
KLSTSPVIK	9	Unmodified	_KLSTSPVIK_					0	0	0			REV__nc|ENSG00000138769|Q92772|CDKL2	REV__nc|ENSG00000138769|Q92772|CDKL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7741394042969	2	486.808042	971.601532	-0.47671	-0.00023207	0.10451	5.0875E-05	-0.3722	-0.00018119	486.8079001674052	27.232	0.50545	26.99	26.744	27.249	-0.24217					27	11	3	0	0	0	0.024292	1	1513	1513		49.442	6.5773	1	480310	+		33100	23896	22781	22825	38045	38045					0.11459503999753906
KLSVAGQLL	9	Unmodified	_KLSVAGQLL_					0	0	0			REV__ENSG00000213918|ENST00000246949|DNASE1	REV__ENSG00000213918|ENST00000246949|DNASE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7527770996094	2	464.794935	927.575317	-0.48844	-0.00022702	0.81601	0.00037928	0.32757	0.00015225	464.79506655814475	29.628	0.48679	29.631	29.388	29.875	0.0031376					15	11	2	0	0	0	0.023817	1	1838	1838		42.396	0	1	81029	+		33101	28756	22782	22826	38046	38046					0.1086323482828675
KLSVKHKY	8	Unmodified	_KLSVKHKY_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.76324462890625	2	501.808377	1001.6022	-0.41596	-0.00020873	-4.4359	-0.002226	-4.8518	-0.0024347	501.806102768256	36.003	0.6443	36.041	35.693	36.338	0.038044					19	13	2	0	0	0	0.027866	1	2708	2708		27.882	7.8855	1	143440			33102	1051	22783	22827	38047	38047					0.10146343439464545
KLSVSPSAPL	10	Unmodified	_KLSVSPSAPL_					0	0	0			REV__nc|ENSG00000171617|O14682-2|ENC1	REV__nc|ENSG00000171617|O14682-2|ENC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7872619628906	2	499.797675	997.580796	-0.18503	-9.2479E-05	-0.40549	-0.00020266	-0.59052	-0.00029514	499.7970716708426	54.799	0.45899	54.648	54.541	55	-0.15036					18	12	2	0	0	0	0.03519	1	6040	6040		31.53	0	1	186770	+		33103	26585	22784	22828	38048	38048					0.08190913620080664
KLTANYSF	8	Unmodified	_KLTANYSF_					0	0	0		ENST00000378509.8_1_7:134001453-134001714:-|nuORF	ENST00000378509.8_1_7:134001453-134001714:-|nuORF	ENST00000378509.8_1_7:134001453-134001714:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.2691650390625	2	472.247818	942.481082	-0.038351	-1.8111E-05	-1.1944	-0.00056406	-1.2328	-0.00058217	472.24855106253267	40.339	0.5233	40.114	39.773	40.296	-0.22501					23	13	3	0	0	0	0.027866	1	3467	3467		42.396	3.59	1	113310			33104	13239	22785	22829	38049	38049					0.007540960061305668
KLTCFPALD	9	Unmodified	_KLTCFPALD_					0	0	0			REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2662048339844	2	504.265153	1006.51575	0.472	0.00023801	-0.59761	-0.00030135	-0.12561	-6.3339E-05	504.76605997010415	72.206	1.0346	71.925	71.472	72.506	-0.28124					63	26	5	0	0	0	0.02435	1	8668	8668		26.693	0	1	409240	+		33105	25064	22786	22830	38050	38050					0.01275595822573905
KLTDRGLPK	9	Unmodified	_KLTDRGLPK_					0	0	0		ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2924194335938	2	514.316566	1026.61858	-1.1439	-0.00058833	0.90028	0.00046303	-0.24363	-0.0001253	514.317007253016	40.295	0.29446	40.318	40.199	40.494	0.023006					11	7	2	0	0	0	0.024447	1	3479	3479		32.812	13.709	1	105950			33106	9751	22787	22831	38051	38051					0.10633424605566688
KLTDWQKLA	9	Unmodified	_KLTDWQKLA_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.8174438476562	2	551.816399	1101.61824	-0.25628	-0.00014142	2.9876	0.0016486	2.7313	0.0015072	551.8179577976023	52.383	0.83285	52.199	51.927	52.759	-0.18404					37	20	2	0	0	0	0.32811	1	5442	5442		71.877	0.58177	1	1727800			33107	18573	22788	22832	38052	38052					0.07150004885693306
KLTDYQVTL	9	Unmodified	_KLTDYQVTL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A;KIF13A|p.Q732Hfs*8|1|0.29|ENSG00000137177|chr6:17805583-17805584|-/CCATCTGAAAATATGTG|frameshift_variant;KIF13A|p.V733Gfs*14|1|0.29|ENSG00000137177|chr6:17805581-17805582|-/C|frameshift_variant	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MSMS	OPSCC_39_ClassI_Rep-1	1	540.8011474609375	2	540.800414	1079.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.122	1	59.122	58.622	59.622	0								0	0	0	0.12965	1	6737	6737		85.862	12.983	1				33108	5096	22789	22833	38053	38053					0.04966592411892634
KLTDYQVTL	9	Unmodified	_KLTDYQVTL_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A;KIF13A|p.Q732Hfs*8|1|0.29|ENSG00000137177|chr6:17805583-17805584|-/CCATCTGAAAATATGTG|frameshift_variant;KIF13A|p.V733Gfs*14|1|0.29|ENSG00000137177|chr6:17805581-17805582|-/C|frameshift_variant	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MSMS	OPSCC_39_ClassI_Rep-1	1	540.801025390625	2	540.800414	1079.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.196	1	59.196	58.696	59.696	0								0	0	0	0.15405	1	6749	6749		80.455	10.827	1				33109	5096	22789	22833	38054	38054					0.04966592411892634
KLTEENTTL	9	Unmodified	_KLTEENTTL_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;nc|ENSG00000242265|Q86TG7-5|PEG10;nc|ENSG00000242265|Q86TG7-2|PEG10;nc|ENSG00000242265|Q86TG7-3|PEG10	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.779541015625	2	524.779679	1047.5448	-1.8416	-0.00096645	0.54665	0.00028687	-1.295	-0.00067958	524.7801670856898	37.789	0.64781	37.789	37.486	38.134	0					52	18	4	0	0	0	0.048057	2	3104	3104;3117		129.42	44.506	1	6283200			33110	10796	22790	22834	38055;38056	38055					0.022934116525675563
KLTEENTTL	9	Unmodified	_KLTEENTTL_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;nc|ENSG00000242265|Q86TG7-5|PEG10;nc|ENSG00000242265|Q86TG7-2|PEG10;nc|ENSG00000242265|Q86TG7-3|PEG10	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.779541015625	2	524.779679	1047.5448	-1.1924	-0.00062574	1.8738	0.00098334	0.68142	0.0003576	524.7797904600642	37.683	0.90883	37.6	37.108	38.017	-0.082512					76	25	4	0	0	0	0.065	2	3075	3075;3087		123.21	40.903	1	6715700			33111	10796	22790	22834	38057;38058	38057					0.022934116525675563
KLTEENTTL	9	Unmodified	_KLTEENTTL_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;nc|ENSG00000242265|Q86TG7-5|PEG10;nc|ENSG00000242265|Q86TG7-2|PEG10;nc|ENSG00000242265|Q86TG7-3|PEG10	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7798461914062	2	524.779679	1047.5448	-0.80112	-0.00042041	-0.60526	-0.00031763	-1.4064	-0.00073804	524.7795156794576	37.838	0.71042	37.87	37.525	38.235	0.032269					56	19	4	0	0	0	0.023452	3	3049	3049;3060;3073		146.79	61.87	1	5773700			33112	10796	22790	22834	38059;38060;38061	38059					0.022934116525675563
KLTELQLRA	9	Unmodified	_KLTELQLRA_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3319702148438	2	536.329673	1070.64479	-0.8533	-0.00045765	0.36247	0.0001944	-0.49084	-0.00026325	536.3297060699254	23.316	0.57079	23.316	23.123	23.694	0					34	13	4	0	0	0	0.26966	1	903	903		79.713	12.219	1	525860			33113	6688	22791	22835	38062	38062					0.11229693777045213
KLTELQLRA	9	Unmodified	_KLTELQLRA_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.329673	1070.64479	-0.98521	-0.0005284	0.64856	0.00034784	-0.33666	-0.00018056	536.3298366851126	23.289	0.70403	23.228	22.981	23.685	-0.060862	-0.024814	0.00042023	NaN	79.713	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495070			33114	6688	22791	22835							0.11229693777045213
KLTELQLRA	9	Unmodified	_KLTELQLRA_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.329673	1070.64479	-1.0957	-0.00058767	0.58789	0.0003153	-0.50784	-0.00027237	536.3298359489264	23.188	0.62	23.264	23.07	23.69	0.076239	0.011761	0.00035515	NaN	79.713	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403810			33115	6688	22791	22835							0.11229693777045213
KLTELQLRA	9	Unmodified	_KLTELQLRA_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.329673	1070.64479	-0.0204	-1.0941E-05	-0.46187	-0.00024772	-0.48227	-0.00025866	536.3293398316689	23.477	0.46232	23.275	23.061	23.523	-0.20193	0.022043	-0.00077088	NaN	79.713	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86382			33116	6688	22791	22835							0.11229693777045213
KLTELQLRA	9	Unmodified	_KLTELQLRA_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.329673	1070.64479	-0.70868	-0.00038009	0.24321	0.00013044	-0.46547	-0.00024964	536.3297572616987	23.383	0.32816	23.203	23.067	23.395	-0.17989	-0.049916	-1.4563E-05	NaN	79.713	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121510			33117	6688	22791	22835							0.11229693777045213
KLTELQLRA	9	Unmodified	_KLTELQLRA_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.329673	1070.64479	1.1499	0.00061673	-1.7347	-0.00093035	-0.58477	-0.00031363	536.3287894573472	23.421	0.32089	23.23	23.079	23.4	-0.19117	-0.022463	-0.0021362	NaN	79.713	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83307			33118	6688	22791	22835							0.11229693777045213
KLTGGLYSH	9	Unmodified	_KLTGGLYSH_					0	0	0		ENSG00000119509|ENST00000262457|INVS	ENSG00000119509|ENST00000262457|INVS	ENSG00000119509|ENST00000262457|INVS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2302551269531	2	488.266542	974.51853	-0.10491	-5.1223E-05	2.7329	0.0013344	2.628	0.0012832	488.2672377336357	31.367	0.41109	31.215	31.045	31.456	-0.15231					14	10	2	0	0	0	0.024374	1	2069	2069		40.778	3.6191	1	88469			33119	3741	22792	22836	38063	38063					0.03025187271748564
KLTGINSKI	9	Unmodified	_KLTGINSKI_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2662048339844	2	487.305667	972.596781	1.3053	0.0006361	-1.5354	-0.00074821	-0.23005	-0.0001121	487.3048054255853	19.731	0.49404	19.498	19.275	19.769	-0.23345					28	9	4	0	0	0	0.024495	1	441	441		26.693	3.6504	1	651230	+		33120	23491	22793	22837	38064	38064					0.10938619856995047
KLTGVKATI	9	Unmodified	_KLTGVKATI_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.8031311035156	2	465.80276	929.590967	0.44089	0.00020537	-0.40427	-0.00018831	0.036618	1.7057E-05	465.8024280292143	32.361	0.68573	32.168	31.771	32.457	-0.19261					35	15	3	0	0	0	0.34489	1	2218	2218		69.628	4.1622	1	913200	+		33121	23051	22794	22838	38065	38065					0.12335521345323741
KLTGVKATI	9	Unmodified	_KLTGVKATI_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.80276	929.590967	0.063725	2.9683E-05	0.037111	1.7286E-05	0.10084	4.6969E-05	465.80262633953816	32.416	0.67732	32.179	31.74	32.417	-0.23667	-0.024293	1.1782E-05	NaN	69.628	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	878830	+		33122	23051	22794	22838							0.12335521345323741
KLTGVKATI	9	Unmodified	_KLTGVKATI_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.80276	929.590967	-0.41886	-0.00019511	0.40748	0.0001898	-0.011382	-5.3017E-06	465.802793912786	32.421	0.49265	32.263	31.991	32.484	-0.15772	0.05939	0.00035682	NaN	69.628	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981210	+		33123	23051	22794	22838							0.12335521345323741
KLTIIAHIN	9	Unmodified	_KLTIIAHIN_					0	0	0			REV__LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	REV__LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.8048706054688	2	511.821484	1021.62842	-0.62756	-0.0003212	0.097578	4.9942E-05	-0.52998	-0.00027126	511.8213430673366	62.795	1.568	62.556	62.394	63.962	-0.23926					65	41	2	0	0	0	0.024319	1	7322	7322		47.657	5.1829	1	907150	+		33124	20338	22795	22839	38066	38066					0.11846612610941065
KLTILANEL	9	Unmodified	_KLTILANEL_					0	0	0		nc|ENSG00000214198|Q6P2S7|TTC41P;nc|ENSG00000214198|Q6P2S7-2|TTC41P;ENST00000551270.1_1_12:104283206-104309165:-|nuORF;ENST00000548520.1_1_12:104283206-104286955:-|nuORF	nc|ENSG00000214198|Q6P2S7|TTC41P	nc|ENSG00000214198|Q6P2S7|TTC41P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.76788330078125	2	507.813325	1013.6121	0.8762	0.00044494	-1.2965	-0.00065837	-0.42029	-0.00021343	507.8125099709794	59.468	0.60346	59.468	59.108	59.711	0					42	15	4	0	0	0	0.02435	1	6751	6751		51.335	15.717	1	1922900			33125	18715	22796	22840	38067	38067					0.10583486654184071
KLTKNGCHS	9	Carbamidomethyl (C)	_KLTKNGC(Carbamidomethyl (C))HS_	KLTKNGC(1)HS		KLTKNGC(58)HS		0	1	0			REV__ENST00000502915.1_1_4:139482657-139483092:+|nuORF	REV__ENST00000502915.1_1_4:139482657-139483092:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.765380859375	2	522.766383	1043.51821	-1.7551	-0.0009175	-2.1336	-0.0011154	-3.8887	-0.0020329	522.7652668598829	30.337	0.90276	30.337	30.017	30.92	0					45	21	4	0	0	0	0.51687	1	1959	1959		58.23	11.773	1	1696400	+		33126	24065	22797	22841	38068	38068	314				-0.0018055571974855411
KLTKRKVR	8	Unmodified	_KLTKRKVR_					0	0	0			REV__ENST00000380121.7_1_13:33018018-33018138:-|nuORF	REV__ENST00000380121.7_1_13:33018018-33018138:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.804931640625	2	514.856193	1027.69783	-0.53563	-0.00027577	2.6309	0.0013545	2.0952	0.0010787	514.8574775654371	56.739	0.72683	56.739	56.46	57.187	0					30	20	2	0	0	0	0.027866	1	6308	6308		18.324	6.8134	1	282870	+		33127	31463	22798	22842	38069	38069					0.18509116350355725
KLTLALISL	9	Unmodified	_KLTLALISL_					0	0	0		ENST00000541960.5_1_12:10366249-10366330:+|nuORF;ENST00000539289.5_1_12:10366177-10366713:+|nuORF;ENST00000535576.5_1_12:10366177-10366556:+|nuORF	ENST00000541960.5_1_12:10366249-10366330:+|nuORF	ENST00000541960.5_1_12:10366249-10366330:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.30657958984375	2	486.328611	970.642668	-0.10665	-5.1866E-05	0.15388	7.4836E-05	0.047232	2.297E-05	486.32867422424073	72.721	0.61807	72.73	72.489	73.107	0.0096512					22	14	2	0	0	0	0.024457	1	8789	8789		29.15	0	1	156230			33128	16352	22799	22843	38070	38070					0.15617265039236372
KLTLDQEE	8	Unmodified	_KLTLDQEE_					0	0	0		nc|ENSG00000150275|Q96QU1-4|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.249755859375	2	488.253297	974.492041	-0.59172	-0.00028891	-3.3641	-0.0016426	-3.9559	-0.0019315	488.25171356817253	29.212	3.9385	29.215	26.802	30.741	0.0031376					219	98	6	0	0	0	0.95679	1	1715	1715		44.117	0	1	6146300			33129	18379	22800	22844	38071	38071					0.0037745358977190335
KLTLEKVFRGL	11	Unmodified	_KLTLEKVFRGL_					0	0	0		ENST00000507562.1_1_5:148725314-148730842:+|nuORF;ENSG00000164284|ENST00000329271|GRPEL2	ENST00000507562.1_1_5:148725314-148730842:+|nuORF	ENST00000507562.1_1_5:148725314-148730842:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.74798583984375	3	435.274729	1302.80236	0.095899	4.1743E-05	1.521	0.00066205	1.6169	0.00070379	435.2751024493593	65.226	0.20749	65.263	65.081	65.288	0.037384					7	5	2	0	0	0	0.024742	1	7638	7638		32.034	0	1	145910			33130	7249	22801	22845	38072	38072					0.16306773316409817
KLTLVHDSI	9	Unmodified	_KLTLVHDSI_					0	0	0			REV__nc|ENSG00000182901|P49802-3|RGS7	REV__nc|ENSG00000182901|P49802-3|RGS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.298828125	2	513.303124	1024.5917	-0.4153	-0.00021317	-1.7845	-0.00091601	-2.1998	-0.0011292	513.8028403701403	95.552	1.0285	95.552	94.963	95.991	0					28	23	2	0	0	0	0.024466	1	12106	12106		18.262	0	1	60360	+		33131	27518	22802	22846	38073	38073					0.0803831599437217
KLTNQFNF	8	Unmodified	_KLTNQFNF_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.26641845703125	2	506.266542	1010.51853	0.23474	0.00011884	-0.45309	-0.00022938	-0.21835	-0.00011054	506.26624466675776	53.014	0.81713	52.887	52.511	53.329	-0.12705					38	20	2	0	0	0	0.53523	1	5508	5508		82.305	12.677	1	6226900			33132	3940	22803	22847	38074	38074					0.01369187271757255
KLTNQFNF	8	Unmodified	_KLTNQFNF_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2665710449219	2	506.266542	1010.51853	0.24346	0.00012325	-0.67967	-0.00034409	-0.43621	-0.00022084	506.2661552251179	53.197	0.76383	52.939	52.644	53.408	-0.25838					34	19	2	0	0	0	0.77775	1	5537	5537		60.972	6.1956	1	6769600			33133	3940	22803	22847	38075	38075					0.01369187271757255
KLTNQFNF	8	Unmodified	_KLTNQFNF_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.26678466796875	2	506.266542	1010.51853	-0.17228	-8.7219E-05	-0.33273	-0.00016845	-0.505	-0.00025567	506.2663252119229	53.035	0.84696	52.846	52.51	53.357	-0.18982					40	21	2	0	0	0	0.71063	1	5512	5512		66.429	2.222	1	7713000			33134	3940	22803	22847	38076	38076					0.01369187271757255
KLTQLIRNGY	10	Unmodified	_KLTQLIRNGY_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.57073974609375	3	402.571545	1204.69281	1.9587	0.00078853	-3.7252	-0.0014997	-1.7665	-0.00071113	402.5699842763258	19.96	0.83271	19.76	19.156	19.988	-0.2001					39	16	4	0	0	0	1.1295	1	480	480		26.063	1.8316	1	265460	+		33135	23484	22804	22848	38077	38077					0.09864767697104071
KLTRHGTT	8	Unmodified	_KLTRHGTT_					0	0	0			REV__ENSG00000167113|ENST00000300452|COQ4	REV__ENSG00000167113|ENST00000300452|COQ4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2630310058594	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0338	1	10241	10241		31.955	4.0726	1	3048400	+		33136	26107	22805	22849	38078	38078					0.054357228488470355
KLTRRLVN	8	Unmodified	_KLTRRLVN_					0	0	0		ENST00000466133.1_1_3:159819443-159820214:+|nuORF;ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7;ENST00000406170.1_1_6:111751926-111752229:+|nuORF	ENST00000466133.1_1_3:159819443-159820214:+|nuORF	ENST00000466133.1_1_3:159819443-159820214:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7705993652344	2	500.324725	998.634898	-0.77223	-0.00038637	3.9115	0.001957	3.1393	0.0015707	500.32657227432867	65.452	0.48483	65.179	64.979	65.464	-0.27282					21	13	2	0	0	0	0.027866	1	7758	7758		55.504	11.387	1	287840			33137	7513	22806	22850	38079	38079					0.1355255056232636
KLTSVKQQL	9	Unmodified	_KLTSVKQQL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.8226928710938	2	522.824224	1043.63389	-1.7044	-0.0008911	0.85617	0.00044763	-0.84822	-0.00044347	522.8244060547426	30.569	0.70278	30.569	30.3	31.003	0					38	16	4	0	0	0	0.17845	1	1971	1971		93.143	5.3889	1	1100300			33138	3658	22807	22851	38080	38080					0.11382291402765077
KLTSVVGTILY	11	Unmodified	_KLTSVVGTILY_					0	0	0		ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;ENST00000574215.5_1_3:27203940-27332977:-|nuORF;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.3590698242188	2	597.360639	1192.70673	-1.2192	-0.0007283	-2.2468	-0.0013422	-3.466	-0.0020704	597.3590702861352	98.599	1.5555	98.599	98.19	99.746	0					99	35	4	0	0	0	1.0521	1	12569	12569		24.519	0.99649	1	2988700			33139	7087;18446	22808	22852	38081	38081					0.11808000405540042
KLTSVVGTILY	11	Unmodified	_KLTSVVGTILY_					0	0	0		ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10;ENST00000574215.5_1_3:27203940-27332977:-|nuORF;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5-4|NEK10	ENSG00000163491|ENST00000691995|NEK10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.3594360351562	2	597.360639	1192.70673	-0.034733	-2.0748E-05	-3.4904	-0.002085	-3.5251	-0.0021058	597.3583204343577	98.637	1.8036	98.633	98.096	99.899	-0.0038834					117	41	4	0	0	0	1.0651	1	12531	12531		20.947	0.95016	1	2975900			33140	7087;18446	22808	22852	38082	38082					0.11808000405540042
KLTVETAEQV	10	Unmodified	_KLTVETAEQV_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.2509765625	2	559.308603	1116.60265	-0.87005	-0.00048662	3.6503	0.0020417	2.7803	0.001555	559.3102683558054	43.476	1.2622	43.337	42.737	43.999	-0.13929					57	34	2	0	0	0	0.03519	1	4027	4027		31.53	5.9558	1	517550	+		33141	27773	22809	22853	38083	38083					0.04901673577978727
KLTVGKVSSGI	11	Unmodified	_KLTVGKVSSGI_					0	0	0		nc|ENSG00000133816|O94851-3|MICAL2	nc|ENSG00000133816|O94851-3|MICAL2	nc|ENSG00000133816|O94851-3|MICAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.805908203125	2	544.837331	1087.66011	-0.33916	-0.00018479	3.8212	0.002082	3.4821	0.0018972	544.8392695660655	73.011	0.6297	72.746	72.469	73.099	-0.26479					31	14	3	0	0	0	0.024768	1	8558	8558		45.022	3.5956	1	710820			33142	18281	22810	22854	38084	38084					0.11978560574243602
KLVAFLFG	8	Unmodified	_KLVAFLFG_					0	0	0		ENSG00000112293|ENST00000230036|GPLD1;nc|ENSG00000112293|P80108-2|GPLD1;ENST00000378243.8_1_6:24473808-24489784:-|nuORF	ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.761474609375	2	447.776014	893.537475	-0.46222	-0.00020697	2.7104	0.0012137	2.2482	0.0010067	447.7765209820607	32.872	0.41372	32.878	32.776	33.189	0.0066223					15	10	2	0	0	0	0.027866	1	2313	2313		19.36	4.6959	1	35035			33143	3194	22811	22855	38085	38085					0.08644768633473632
KLVAKRLL	8	Unmodified	_KLVAKRLL_					0	0	0			REV__ENSG00000122420|ENST00000370757|PTGFR	REV__ENSG00000122420|ENST00000370757|PTGFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7878723144531	2	470.836937	939.659321	0.33405	0.00015728	2.4571	0.0011569	2.7911	0.0013142	470.8377304261616	23.723	0.26332	23.8	23.647	23.91	0.076241					9	5	2	0	0	0	0.027866	1	928	928		8.2313	7.1359	1	22736	+		33144	22641	22812	22856	38086	38086					0.18707810715829964
KLVALLKLT	9	Unmodified	_KLVALLKLT_					0	0	0		ENSG00000125962|ENST00000473968|ARMCX5	ENSG00000125962|ENST00000473968|ARMCX5	ENSG00000125962|ENST00000473968|ARMCX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.8270568847656	2	499.852253	997.689953	-0.41759	-0.00020873	0.45102	0.00022544	0.033425	1.6707E-05	500.3544955097232	22.068	0.37994	21.877	21.662	22.042	-0.19072					10	7	2	0	0	0	0.024539	1	721	721		27.882	15.675	1	57371			33145	4165	22813	22857	38087	38087					0.1910154431020601
KLVAQADT	8	Unmodified	_KLVAQADT_					0	0	0			REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2	REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2223205566406	2	423.239993	844.465432	-0.64496	-0.00027297	1.2178	0.00051544	0.57288	0.00024247	423.24026160688936	29.739	0.48721	29.744	29.511	29.998	0.0045815					14	11	2	0	0	0	0.027866	1	1809	1809		31.955	1.4512	1	51478	+		33146	25167	22814	22858	38088	38088					0.036978094890741886
KLVAQSVKT	9	Unmodified	_KLVAQSVKT_					0	0	0			REV__ENSG00000178878|ENST00000356591|APOLD1	REV__ENSG00000178878|ENST00000356591|APOLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.249755859375	2	487.305667	972.596781	-0.2054	-0.00010009	-0.78418	-0.00038213	-0.98957	-0.00048222	487.30514798242007	25.795	0.34344	25.875	25.706	26.049	0.08009					21	7	3	0	0	0	0.024292	1	1204	1204		40.778	3.6191	1	197080	+		33147	27211	22815	22859	38089	38089					0.10938619856995047
KLVAVAEATVV	11	Unmodified	_KLVAVAEATVV_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2762451171875	2	550.339707	1098.66486	0.013896	7.6476E-06	-0.059587	-3.2793E-05	-0.045691	-2.5146E-05	550.3395681527734	51.38	0.62726	51.38	51.143	51.77	0					42	17	4	0	0	0	0.024736	1	5493	5493		36.447	7.2767	1	1149600	+		33148	20598	22816	22860	38090	38090					0.1194744471699778
KLVAVAEATVV	11	Unmodified	_KLVAVAEATVV_					0	0	0			REV__nc|ENSG00000078018|P11137-3|MAP2	REV__nc|ENSG00000078018|P11137-3|MAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2763671875	2	550.339707	1098.66486	-1.3646	-0.00075101	1.1829	0.00065102	-0.18168	-9.9986E-05	550.3402263525546	51.281	0.52892	51.368	51.116	51.644	0.087009					36	14	3	0	0	0	0.02475	1	5401	5401		42.864	14.783	1	1200700	+		33149	20598	22816	22860	38091	38091					0.1194744471699778
KLVDEGQG	8	Unmodified	_KLVDEGQG_					0	0	0			REV__nc|ENSG00000166478|P52747-2|ZNF143	REV__nc|ENSG00000166478|P52747-2|ZNF143	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5931701660156	2	423.2218	844.429047	-0.15422	-6.5271E-05	2.472	0.0010462	2.3177	0.00098091	423.2227732896241	50.776	0.57208	50.627	50.289	50.861	-0.14916					24	16	2	0	0	0	0.027866	1	5300	5300		16.473	9.2798	1	243310	+		33150	26023	22817	22861	38092	38092					0.0006093259238468818
KLVDKILIN	9	Unmodified	_KLVDKILIN_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-6|MOK	REV__nc|ENSG00000080823|Q9UQ07-6|MOK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3447265625	2	528.344792	1054.67503	-1.0603	-0.0005602	0.45568	0.00024076	-0.60462	-0.00031945	528.3450138406308	54.304	1.5238	54.304	53.976	55.5	0					107	43	4	0	0	0	0.03666	1	5936	5936		136.27	0	1	10691000	+		33151	36484	22818	22862	38093	38093					0.14988052442231492
KLVDKILIN	9	Unmodified	_KLVDKILIN_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-6|MOK	REV__nc|ENSG00000080823|Q9UQ07-6|MOK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.344792	1054.67503	-0.30126	-0.00015917	-0.19255	-0.00010173	-0.49381	-0.0002609	528.3445533279664	54.332	0.42258	54.087	53.949	54.372	-0.2453	-0.13257	4.467E-05	NaN	136.27	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149440	+		33152	36484	22818	22862							0.14988052442231492
KLVDLARVPL	10	Unmodified	_KLVDLARVPL_					0	0	0			REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.323486328125	2	562.363516	1122.71248	-0.71244	-0.00040065	-0.74935	-0.0004214	-1.4618	-0.00082206	562.3642606613225	69.534	0.20457	69.267	69.164	69.368	-0.26725					7	4	2	0	0	0	0.03519	1	8072	8072		27.882	0	1	46660	+		33153	23526	22819	22863	38094	38094					0.15603143707835443
KLVDLILEN	9	Unmodified	_KLVDLILEN_					0	0	0			REV__ENST00000531814.5_1_11:9685687-9746474:+|nuORF	REV__ENST00000531814.5_1_11:9685687-9746474:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3203125	2	528.818607	1055.62266	0.4704	0.00024876	1.084	0.00057325	1.5544	0.00082201	528.8187812301243	70.314	1.4505	70.021	69.467	70.918	-0.29291					101	39	4	0	0	0	0.67244	1	8480	8480		47.96	0.30219	1	14037000	+		33154	23394	22820	22864	38095	38095					0.09707469308614236
KLVEASPKD	9	Unmodified	_KLVEASPKD_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2642517089844	2	493.779482	985.544411	0.47206	0.00023309	-0.79482	-0.00039247	-0.32276	-0.00015937	493.77860019132675	71.991	0.63874	71.702	71.273	71.912	-0.28857					19	16	2	0	0	0	0.023635	1	8642	8642		66.429	15.094	1	246000	+		33155	20300	22821	22865	38096	38096					0.051060367233731085
KLVEASPKD	9	Unmodified	_KLVEASPKD_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.779482	985.544411	0.70489	0.00034806	-1.8771	-0.00092689	-1.1722	-0.00057883	493.7784527475437	71.659	0.52701	71.659	71.377	71.904	0	-0.024381	-0.00084913	NaN	66.429	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155720	+		33156	20300	22821	22865							0.051060367233731085
KLVEASPKD	9	Unmodified	_KLVEASPKD_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.779482	985.544411	0.27072	0.00013368	-0.50762	-0.00025065	-0.2369	-0.00011698	493.77898126692037	71.625	0.54977	71.635	71.509	72.059	0.010735	-0.048398	0.00050334	NaN	66.429	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206280	+		33157	20300	22821	22865							0.051060367233731085
KLVEASPKD	9	Unmodified	_KLVEASPKD_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.779482	985.544411	-0.20096	-9.923E-05	-0.82242	-0.00040609	-1.0234	-0.00050532	493.77900464706414	72.001	0.60207	71.726	71.511	72.113	-0.27509	0.042541	0.00019246	NaN	66.429	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172200	+		33158	20300	22821	22865							0.051060367233731085
KLVEASPKD	9	Unmodified	_KLVEASPKD_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.779482	985.544411	0.35583	0.0001757	-1.2373	-0.00061096	-0.88148	-0.00043526	493.7789687764493	72.004	0.60358	71.742	71.441	72.045	-0.26199	0.058107	-0.00021727	NaN	66.429	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202310	+		33159	20300	22821	22865							0.051060367233731085
KLVEASPKD	9	Unmodified	_KLVEASPKD_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.779482	985.544411	0.15125	7.4684E-05	-0.78447	-0.00038735	-0.63322	-0.00031267	493.7790155658935	71.844	0.40184	71.638	71.459	71.861	-0.20613	-0.046195	0.00022994	NaN	66.429	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183150	+		33160	20300	22821	22865							0.051060367233731085
KLVEFANS	8	Unmodified	_KLVEFANS_					0	0	0			REV__ENSG00000186105|ENST00000334994|LRRC70	REV__ENSG00000186105|ENST00000334994|LRRC70	MSMS	OPSCC_40_ClassI_Rep-2	5	454.2496643066406	2	454.247818	906.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.825	1	17.618	17.118	18.118	-0.20669								0	0	0	0.85517	1	221	221		30.504	1.3541	1		+		33161	27825	22822	22866	38097	38097					0.024100960061332444
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000555656.5_1_14:20915401-20917107:-|nuORF;ENST00000556124.3_1_14:20916255-20917133:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.294677734375	2	531.3157	1060.61685	-1.3556	-0.00072023	0.80571	0.00042809	-0.54984	-0.00029214	531.3158420067253	65.862	0.89433	65.649	65.338	66.232	-0.21327					57	21	4	0	0	0	0.023635	1	7534	7534		76.774	17.992	1	1698500			33162	1979	22823	22867	38098	38098					0.08896370796924202
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000555656.5_1_14:20915401-20917107:-|nuORF;ENST00000556124.3_1_14:20916255-20917133:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2926635742188	2	531.3157	1060.61685	-0.56914	-0.00030239	0.13358	7.0976E-05	-0.43556	-0.00023142	531.315411138121	65.876	0.80932	65.625	65.312	66.121	-0.25112					51	19	4	0	0	0	0.024025	1	7530	7530		52.937	3.4952	1	1788700			33163	1979	22823	22867	38099	38099					0.08896370796924202
KLVELTQKL	9	Unmodified	_KLVELTQKL_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3421630859375	2	536.342249	1070.66995	-0.55444	-0.00029737	0.4106	0.00022022	-0.14383	-7.7143E-05	536.3423915999223	50.75	1.5819	50.601	50.193	51.775	-0.14916					107	43	4	0	0	0	0.11727	1	5313	5313		106.68	7.6701	1	7432500			33164	5204	22824	22868	38100	38100					0.13743748579599924
KLVEPGGF	8	Unmodified	_KLVEPGGF_					0	0	0			REV__nc|ENSG00000116791|Q08257-3|CRYZ	REV__nc|ENSG00000116791|Q08257-3|CRYZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.7397766113281	2	423.739628	845.464704	0.16567	7.0199E-05	0.28725	0.00012172	0.45292	0.00019192	423.73960533994006	71.659	0.9956	71.659	71.377	72.373	0					62	25	4	0	0	0	0.75307	1	8700	8700		62.978	2.6845	1	1712400	+		33165	22305	22825	22869	38101	38101					0.03579014840045147
KLVERVVK	8	Unmodified	_KLVERVVK_					0	0	0			REV__nc|ENSG00000113161|P04035-2|HMGCR	REV__nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3088073730469	2	485.824027	969.633501	0.72188	0.00035071	-1.2577	-0.00061104	-0.53585	-0.00026033	485.8236389474276	20.664	0.39483	20.468	20.286	20.681	-0.19577					11	7	2	0	0	0	0.027866	1	573	573		35.618	1.4457	1	20505	+		33166	22045	22826	22870	38102	38102					0.14746916473563942
KLVFRLSV	8	Unmodified	_KLVFRLSV_					0	0	0		ENST00000455480.6_1_12:112194358-112194784:+|nuORF	ENST00000455480.6_1_12:112194358-112194784:+|nuORF	ENST00000455480.6_1_12:112194358-112194784:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7532958984375	2	481.313295	960.612037	-0.16163	-7.7794E-05	0.21496	0.00010346	0.05333	2.5668E-05	481.31326878180994	47.837	0.72034	47.684	47.371	48.091	-0.15301					28	21	2	0	0	0	0.027866	1	4870	4870		26.796	6.3143	1	504170			33167	14580	22827	22871	38103	38103					0.13015531444852968
KLVFSLRIMD	10	Unmodified	_KLVFSLRIMD_					0	0	0			REV__ENST00000464491.5_1_2:172180836-172182590:-|nuORF	REV__ENST00000464491.5_1_2:172180836-172182590:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.35595703125	2	611.354834	1220.69511	0.14542	8.89E-05	2.1046	0.0012867	2.25	0.0013756	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.0992	1	11601	11601		32.812	0.061884	1	13233000	+		33168	32975	22828	22872	38104	38104					0.09359480110515506
KLVGEFLEV	9	Unmodified	_KLVGEFLEV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2996215820312	2	517.30005	1032.58555	0.067529	3.4933E-05	-0.92739	-0.00047974	-0.85986	-0.00044481	517.2994899496231	68.17	1.627	67.881	67.388	69.015	-0.28846					82	41	4	0	0	0	0.19099	2	8109	8109;8137		90.37	13.596	1	8161200			33169	1302	22829	22873	38105;38106	38105					0.07055797762859584
KLVGTHQT	8	Unmodified	_KLVGTHQT_					0	0	0			REV__ENSG00000134489|ENST00000256906|HRH4	REV__ENSG00000134489|ENST00000256906|HRH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.78759765625	2	442.253434	882.492316	-0.66507	-0.00029413	-0.57787	-0.00025557	-1.2429	-0.00054969	442.2533585985855	43.502	0.32027	43.264	43.099	43.419	-0.23736					10	8	2	0	0	0	0.027866	1	3977	3977		19.104	0	1	84829	+		33170	23457	22830	22874	38107	38107					0.046369181002773985
KLVIIVDP	8	Unmodified	_KLVIIVDP_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.74542236328125	2	448.794404	895.574254	-0.04095	-1.8378E-05	2.6206	0.0011761	2.5796	0.0011577	448.79553384937105	47.393	0.51083	47.393	47.111	47.622	0					25	14	2	0	0	0	0.027866	1	4723	4723		18.324	14.339	1	166220			33171	10919	22831	22875	38108	38108					0.12229020459369622
KLVIKQEYMK	10	Unmodified	_KLVIKQEYMK_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2645568847656	3	427.252936	1278.73698	-0.8045	-0.00034372	1.0736	0.00045871	0.26913	0.00011499	427.5887878148565	54.466	0.20316	54.466	54.321	54.524	0					8	5	2	0	0	0	0.03519	1	5966	5966		20.837	6.7511	1	216270			33172	10177	22832	22876	38109	38109					0.10876035799037709
KLVINGNLI	9	Unmodified	_KLVINGNLI_					0	0	0		ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2735595703125	2	492.316035	982.617516	-0.25892	-0.00012747	-2.9584	-0.0014565	-3.2173	-0.0015839	492.3145428984239	23.673	0.2965	23.673	23.441	23.737	0					9	6	2	0	0	0	0.024436	1	942	942		38.806	12.01	1	47943			33173	14463	22833	22877	38110	38110					0.12551210236654242
KLVIVNGDD	9	Unmodified	_KLVIVNGDD_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8365478515625	2	486.771657	971.528761	-0.21261	-0.00010349	-0.37394	-0.00018202	-0.58655	-0.00028551	486.7712304724593	33.716	0.48205	33.485	33.273	33.755	-0.23107					18	11	2	0	0	0	0.02435	1	2455	2455		34.173	0	1	151150			33174	9030	22834	22878	38111	38111					0.04185750206318062
KLVIYLLL	8	Unmodified	_KLVIYLLL_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7926330566406	2	487.836071	973.65759	-1.0963	-0.0005348	-0.11793	-5.7529E-05	-1.2142	-0.00059233	487.83532112470175	36.155	0.30347	36.155	35.96	36.263	0					13	8	2	0	0	0	0.027866	1	2825	2825		21.702	6.0661	1	59728	+		33175	27352	22835	22879	38112	38112					0.16970756907221585
KLVKENLQP	9	Unmodified	_KLVKENLQP_					0	0	0			REV__WBP11|p.D80H|1|0.47|ENSG00000084463|chr12:14796956-14796956|C/G|missense_variant	REV__WBP11|p.D80H|1|0.47|ENSG00000084463|chr12:14796956-14796956|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7652587890625	2	534.824224	1067.63389	-1.7036	-0.00091114	0.087133	4.6601E-05	-1.6165	-0.00086454	534.8241420081864	49.065	0.47831	49.139	48.95	49.428	0.074196					21	12	2	0	0	0	0.024017	1	4963	4963		56.434	5.2411	1	358440	+		33176	20732	22836	22880	38113	38113					0.10278291402732975
KLVKEVIAV	9	Unmodified	_KLVKEVIAV_					0	0	0		ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2073974609375	2	499.83406	997.653567	-0.53377	-0.00026679	-0.47535	-0.0002376	-1.0091	-0.00050439	499.8336932681718	43.733	0.52729	43.629	43.398	43.925	-0.10468					38	13	4	0	0	0	0.024456	1	4030	4030		42.864	5.7052	1	1575600			33177	2665	22837	22881	38114	38114					0.1546466741350514
KLVKEVIAV	9	Unmodified	_KLVKEVIAV_					0	0	0		ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.207275390625	2	499.83406	997.653567	-1.0001	-0.00049987	-0.091956	-4.5963E-05	-1.092	-0.00054583	499.8339091981423	43.892	0.66698	43.648	43.378	44.045	-0.2444					45	17	4	0	0	0	0.024313	1	4047	4047		42.864	9.3487	1	1480000			33178	2665	22837	22881	38115	38115					0.1546466741350514
KLVKEVIAV	9	Unmodified	_KLVKEVIAV_					0	0	0		ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2079772949219	2	499.83406	997.653567	-1.2672	-0.00063341	0.15698	7.8462E-05	-1.1103	-0.00055495	499.8340365918456	43.871	0.65362	43.651	43.42	44.073	-0.21938					43	17	4	0	0	0	0.024257	1	4053	4053		67.494	19.836	1	1514800			33179	2665	22837	22881	38116	38116					0.1546466741350514
KLVKLHAVV	9	Unmodified	_KLVKLHAVV_					0	0	0		nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-2|HCK;nc|ENSG00000101336|P08631-4|HCK;ENSG00000101336|ENST00000375852|HCK	nc|ENSG00000101336|P08631-3|HCK	nc|ENSG00000101336|P08631-3|HCK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2715759277344	2	503.84222	1005.66989	0.29862	0.00015046	-1.9988	-0.0010071	-1.7002	-0.00085662	503.84126703493683	57.69	0.46004	57.515	57.111	57.571	-0.1749					16	11	2	0	0	0	0.024541	1	6422	6422		7.6903	4.2803	1	71042			33180	2312	22838	22882	38117	38117					0.16727793370262134
KLVKLVID	8	Unmodified	_KLVKLVID_					0	0	0			REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7869567871094	2	464.315503	926.616454	0.98894	0.00045918	-1.1762	-0.00054611	-0.18722	-8.6929E-05	464.31481073693527	71.084	0.801	70.791	70.585	71.386	-0.29291					28	19	2	0	0	0	0.027866	1	8596	8596		31.955	0	1	365430	+		33181	26573	22839	22883	38118	38118					0.1502099586773511
KLVKTGEQV	9	Unmodified	_KLVKTGEQV_					0	0	0			REV__nc|ENSG00000136108|Q8WWK9-6|CKAP2	REV__nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3148498535156	2	501.303124	1000.5917	-0.85667	-0.00042945	-0.15065	-7.5523E-05	-1.0073	-0.00050497	501.30324118695694	60.527	0.3294	60.273	60.092	60.421	-0.25373					11	7	2	0	0	0	0.024307	1	6732	6732		46.457	22.934	1	99653	+		33182	23626	22840	22884	38119	38119					0.09142315994381534
KLVLCDNAQP	10	Unmodified	_KLVLCDNAQP_					0	0	0			REV__nc|ENSG00000184060|Q9NPF8-2|ADAP2	REV__nc|ENSG00000184060|Q9NPF8-2|ADAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.31884765625	2	550.792066	1099.56958	-0.53534	-0.00029486	-2.9202	-0.0016084	-3.4555	-0.0019033	550.7905913786227	64.465	0.6705	64.209	63.795	64.465	-0.25563					27	16	3	0	0	0	0.03519	1	7289	7289		24.519	0	1	339090	+		33183	27635	22841	22885	38120	38120					0.023777682543141054
KLVLIHKLL	9	Unmodified	_KLVLIHKLL_					0	0	0		CHD7|p.D1296H|1|0.38|ENSG00000171316|chr8:60836180-60836180|G/C|missense_variant	CHD7|p.D1296H|1|0.38|ENSG00000171316|chr8:60836180-60836180|G/C|missense_variant	CHD7|p.D1296H|1|0.38|ENSG00000171316|chr8:60836180-60836180|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.86328125	2	538.881345	1075.74814	-1.3663	-0.0007363	-0.26891	-0.00014491	-1.6353	-0.00088121	538.8801190176929	80.316	0.29685	80.338	80.189	80.486	0.021439					8	6	2	0	0	0	0.024541	1	9916	9916		12.207	3.9756	1	60533			33184	264	22842	22886	38121	38121					0.2132922595551463
KLVLIHKLL	9	Unmodified	_KLVLIHKLL_					0	0	0		CHD7|p.D1296H|1|0.38|ENSG00000171316|chr8:60836180-60836180|G/C|missense_variant	CHD7|p.D1296H|1|0.38|ENSG00000171316|chr8:60836180-60836180|G/C|missense_variant	CHD7|p.D1296H|1|0.38|ENSG00000171316|chr8:60836180-60836180|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.881345	1075.74814	-1.5007	-0.00080872	4.7921	0.0025824	3.2913	0.0017736	538.8835160583088	80.508	0.1678	80.356	80.217	80.385	-0.15169	0.0091709	0.0027141	NaN	30.504	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67780			33185	264	22842	22886							0.2132922595551463
KLVLNCTVW	9	Unmodified	_KLVLNCTVW_					0	0	0		nc|ENSG00000037280|P35916-3|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant	nc|ENSG00000037280|P35916-3|FLT4	nc|ENSG00000037280|P35916-3|FLT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2907104492188	2	538.30207	1074.58959	-0.31858	-0.00017149	-3.5558	-0.0019141	-3.8744	-0.0020856	538.2998197215792	34.359	0.65543	34.135	33.844	34.499	-0.22412					32	16	3	0	0	0	0.024535	1	2575	2575		12.207	0.69583	1	257490			33186	1045	22843	22887	38122	38122					0.055275639849242
KLVLNCTVW	9	Unmodified	_KLVLNCTVW_					0	0	0		nc|ENSG00000037280|P35916-3|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant	nc|ENSG00000037280|P35916-3|FLT4	nc|ENSG00000037280|P35916-3|FLT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.30207	1074.58959	-1.5088	-0.0008122	-7.2822	-0.00392	-8.791	-0.0047322	538.2988044230096	34.245	0.38675	34.295	34.131	34.518	0.050255	0.12593	-0.0038468	NaN	23.042	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76640			33187	1045	22843	22887							0.055275639849242
KLVLNCTVW	9	Unmodified	_KLVLNCTVW_					0	0	0		nc|ENSG00000037280|P35916-3|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant	nc|ENSG00000037280|P35916-3|FLT4	nc|ENSG00000037280|P35916-3|FLT4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.30207	1074.58959	-1.656	-0.00089145	-2.8555	-0.0015371	-4.5116	-0.0024286	538.30050327873	34.254	0.51351	34.078	33.82	34.334	-0.17557	-0.091433	0.00091893	NaN	23.042	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124580			33188	1045	22843	22887							0.055275639849242
KLVLPAPQI	9	Unmodified	_KLVLPAPQI_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2765808105469	2	489.820953	977.627353	-1.3266	-0.00064982	1.2951	0.00063436	-0.031546	-1.5452E-05	489.82148963200007	64.912	0.90631	64.649	64.23	65.136	-0.2626					56	23	3	0	0	0	0.024292	1	7627	7627		49.442	7.0454	1	674010			33189	2050	22844	22888	38123	38123					0.1376439824202862
KLVMEDIFI	9	Unmodified	_KLVMEDIFI_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF;DNAH1|p.G712S|1|0.08|ENSG00000114841|chr3:52348915-52348915|G/A|missense_variant	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MSMS	OPSCC_39_ClassI_Rep-2	2	554.3073120117188	2	554.309561	1106.60457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.65	1	100.66	100.16	101.16	0.010117								0	0	0	0.1211	1	12843	12843		87.754	2.3948	1				33190	3387	22845	22889	38124	38124					0.05553011062261248
KLVRDGIHLSK	11	Unmodified	_KLVRDGIHLSK_					0	0	0		ENSG00000203727|ENST00000367474|SAMD5	ENSG00000203727|ENST00000367474|SAMD5	ENSG00000203727|ENST00000367474|SAMD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.250244140625	3	422.594461	1264.76155	-0.024008	-1.0146E-05	-4.4835	-0.0018947	-4.5075	-0.0019049	422.59251437759303	52.746	1.327	52.619	52.039	53.366	-0.12705					56	33	2	0	0	0	0.024776	1	5588	5588		14.243	0	1	153540			33191	10275	22846	22890	38125	38125					0.13976431996798055
KLVRLPLGW	9	Unmodified	_KLVRLPLGW_					0	0	0			REV__nc|ENSG00000230246|P0DKV0|SPATA31C1;REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7584228515625	2	541.347669	1080.68079	-0.87542	-0.00047391	-4.0104	-0.002171	-4.8859	-0.002645	541.3453859609644	47.675	0.58642	47.675	47.289	47.875	0					28	17	2	0	0	0	0.024541	1	4736	4736		24.203	10.066	1	529120	+		33192	36975;27795	22847	22891	38126	38126					0.1436719574453491
KLVRLPLGW	9	Unmodified	_KLVRLPLGW_					0	0	0			REV__nc|ENSG00000230246|P0DKV0|SPATA31C1;REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	541.347669	1080.68079	-0.84115	-0.00045536	-3.9757	-0.0021522	-4.8169	-0.0026076	541.3454400269503	47.837	0.48241	47.684	47.441	47.924	-0.15301	0.019972	-9.736E-05	NaN	30.504	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627650	+		33193	36975;27795	22847	22891							0.1436719574453491
KLVRNKIW	8	Unmodified	_KLVRNKIW_					0	0	0			REV__CD1E|p.S370L|1|0.09|ENSG00000158488|chr1:158356838-158356838|C/T|missense_variant	REV__CD1E|p.S370L|1|0.09|ENSG00000158488|chr1:158356838-158356838|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.8181762695312	2	528.837468	1055.66038	-0.3281	-0.00017351	-0.69334	-0.00036667	-1.0214	-0.00054018	528.8366445030708	70.401	0.15884	70.144	70.016	70.175	-0.25713					5	3	2	0	0	0	0.027866	1	8207	8207		33.516	11.556	1	145440	+		33194	19271	22848	22892	38127	38127					0.13478025084737055
KLVSPLCLA	9	Unmodified	_KLVSPLCLA_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENST00000470757.5_1_3:10106087-10114602:+|nuORF	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2878723144531	2	472.285889	942.557224	0.48131	0.00022732	3.1588	0.0014918	3.6401	0.0017192	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.85329	1	11724	11724		35.618	1.4457	1	42478000			33195	5747	22849	22893	38128	38128					0.08364776581902333
KLVSSTLKP	9	Unmodified	_KLVSSTLKP_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000032840	REV__CON__ENSEMBL:ENSBTAP00000032840	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7742919921875	2	486.808042	971.601532	-0.46072	-0.00022428	-0.4682	-0.00022793	-0.92892	-0.00045221	486.80762636854763	56.257	0.50648	56.101	55.852	56.358	-0.15601					20	13	2	0	0	0	0.024484	1	6190	6190		23.523	0	1	112170	+	+	33196	19529	22850	22894	38129	38129					0.11459503999753906
KLVTDATEN	9	Unmodified	_KLVTDATEN_					0	0	0			REV__nc|ENSG00000155959|P61758-2|VBP1	REV__nc|ENSG00000155959|P61758-2|VBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7889099121094	2	495.758746	989.50294	-0.45451	-0.00022533	3.0071	0.0014908	2.5526	0.0012655	495.7600291426419	30.59	0.87705	30.599	30.247	31.124	0.0086689					44	20	3	0	0	0	0.024374	1	1943	1943		25.574	9.9322	1	603960	+		33197	25039	22851	22895	38130	38130					0.007768559640339845
KLVTKECIKAF	11	Unmodified	_KLVTKECIKAF_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2647399902344	3	427.252936	1278.73698	-0.039406	-1.6836E-05	-1.8242	-0.00077941	-1.8636	-0.00079625	427.25227841732334	54.576	0.7002	54.426	54.12	54.82	-0.15036					23	19	2	0	0	0	0.02473	1	5954	5954		15.921	0	1	341870	+		33198	23116	22852	22896	38131	38131					0.10876035799037709
KLVTTVTEI	9	Unmodified	_KLVTTVTEI_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF;ENST00000494114.1_1_1:40536414-40537202:+|nuORF	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.30548095703125	2	502.305332	1002.59611	-0.16987	-8.5326E-05	-0.56805	-0.00028533	-0.73792	-0.00037066	502.3048638542911	52.255	0.62378	52.255	52.049	52.673	0					42	15	4	0	0	0	0.32064	1	5608	5608		72.879	14.097	1	2095900			33199	4507	22853	22897	38132	38132					0.09491780417272366
KLVTTVTEI	9	Unmodified	_KLVTTVTEI_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF;ENST00000494114.1_1_1:40536414-40537202:+|nuORF	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.30560302734375	2	502.305332	1002.59611	0.10845	5.4474E-05	-1.4582	-0.00073244	-1.3497	-0.00067796	502.30431920306506	52.357	0.77312	52.21	51.985	52.758	-0.14735					46	19	3	0	0	0	0.03666	1	5597	5597		136.27	67.783	1	1885500			33200	4507	22853	22897	38133	38133					0.09491780417272366
KLVTTVTEI	9	Unmodified	_KLVTTVTEI_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF;ENST00000494114.1_1_1:40536414-40537202:+|nuORF	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.305332	1002.59611	-0.30034	-0.00015086	-0.78008	-0.00039184	-1.0804	-0.0005427	502.3047582944385	52.212	0.66955	52.304	52.04	52.71	0.091938	0.047749	1.4558E-05	NaN	136.27	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176500			33201	4507	22853	22897							0.09491780417272366
KLVWWQLQRL	10	Unmodified	_KLVWWQLQRL_					0	0	0			REV__ENST00000285279.9_1_7:55539512-55539692:-|nuORF	REV__ENST00000285279.9_1_7:55539512-55539692:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2768859863281	3	457.274952	1368.80303	0.39399	0.00018016	2.6395	0.001207	3.0335	0.0013871	457.27588496507224	103.38	0.6664	103.25	102.98	103.65	-0.12724					40	15	3	0	0	0	1.1211	1	12850	12850		21.686	5.1559	1	588880	+		33202	29914	22854	22898	38134	38134					0.13337612756117778
KLVYPFYIS	9	Unmodified	_KLVYPFYIS_					0	0	0			REV__ENSG00000188921|ENST00000495827|HACD4	REV__ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2390747070312	2	565.318243	1128.62193	-0.24482	-0.0001384	1.9057	0.0010773	1.6609	0.00093893	565.3188755288119	49.138	0.44523	48.956	48.631	49.076	-0.18206					20	11	2	0	0	0	0.024506	1	4902	4902		10.866	0	1	266830	+		33203	28079	22855	22899	38135	38135					0.06276674659557102
KLWALLPQ	8	Unmodified	_KLWALLPQ_					0	0	0			REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2599182128906	2	484.80002	967.585488	-0.82474	-0.00039983	-3.6554	-0.0017722	-4.4802	-0.002172	484.7983214649107	36.181	1.0734	36.219	35.61	36.684	0.038044					74	29	4	0	0	0	0.027866	1	2831	2831		33.516	0	1	2420200	+		33204	20173	22856	22900	38136	38136					0.10039842553510425
KLWEAESKL	9	Unmodified	_KLWEAESKL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.3077392578125	2	552.308406	1102.60226	-1.0729	-0.00059256	0.59248	0.00032723	-0.48039	-0.00026532	552.3085899162359	44.364	1.0242	44.364	43.91	44.934	0					66	29	3	0	0	0	0.023452	1	4235	4235		146.79	25.917	1	4309000			33205	6715	22857	22901	38137	38137					0.05506298648788288
KLWEAESKL	9	Unmodified	_KLWEAESKL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.3070678710938	2	552.308406	1102.60226	-0.52895	-0.00029214	0.076559	4.2284E-05	-0.45239	-0.00024986	552.3083367320039	44.456	0.96357	44.493	44.209	45.173	0.0369					49	27	2	0	0	0	0.056725	1	4190	4190		126.24	30.427	1	3673100			33206	6715	22857	22901	38138	38138					0.05506298648788288
KLWEAESKL	9	Unmodified	_KLWEAESKL_					0	0	0		ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	ENSG00000159055|ENST00000290130|MIS18A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.308406	1102.60226	-1.5622	-0.00086283	1.1041	0.0006098	-0.45812	-0.00025302	552.3088611665712	44.587	0.88549	44.438	44.158	45.044	-0.1488	-0.0059481	0.00074241	NaN	146.79	62	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3701700			33207	6715	22857	22901							0.05506298648788288
KLWESPNVL	9	Unmodified	_KLWESPNVL_					0	0	0		nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000471809.5_1_22:37159849-37172159:-|nuORF	nc|ENSG00000100360|Q9BW83-2|IFT27	nc|ENSG00000100360|Q9BW83-2|IFT27	MSMS	OPSCC_39_ClassI_Rep-1	1	543.296630859375	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.539	1	62.539	62.039	63.039	0								0	0	0	0.047455	1	7280	7280		110.12	0	1				33208	2191	22858	22902	38139	38139					0.05278315994382865
KLWESPNVL	9	Unmodified	_KLWESPNVL_					0	0	0		nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000471809.5_1_22:37159849-37172159:-|nuORF	nc|ENSG00000100360|Q9BW83-2|IFT27	nc|ENSG00000100360|Q9BW83-2|IFT27	MSMS	OPSCC_39_ClassI_Rep-2	2	543.2979125976562	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.768	1	62.528	62.028	63.028	-0.23926								0	0	0	0.20126	1	7284	7284		75.043	3.1658	1				33209	2191	22858	22902	38140	38140					0.05278315994382865
KLWGRNVF	8	Unmodified	_KLWGRNVF_					0	0	0		ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.79669189453125	2	510.292894	1018.57123	-0.80914	-0.0004129	4.1208	0.0021028	3.3117	0.0016899	510.79444058834883	61.159	0.72704	60.905	60.66	61.387	-0.25373					49	17	4	0	0	0	0.91239	1	6825	6825		50.025	2.3672	1	947120			33210	8517	22859	22903	38141	38141					0.06269190125226487
KLWIIALN	8	Unmodified	_KLWIIALN_					0	0	0		ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7969055175781	2	485.807845	969.601138	0.90655	0.00044041	1.7609	0.00085544	2.6674	0.0012958	485.8089146537302	59.499	0.55437	59.299	59.099	59.654	-0.20016					29	14	3	0	0	0	0.027866	1	6788	6788		21.96	0	1	644810			33211	11466	22860	22904	38142	38142					0.11512129070536048
KLWKALLV	8	Unmodified	_KLWKALLV_					0	0	0		ENST00000327490.7_1_17:74266941-74267184:+|nuORF	ENST00000327490.7_1_17:74266941-74267184:+|nuORF	ENST00000327490.7_1_17:74266941-74267184:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.9278564453125	2	485.826038	969.637523	-0.67082	-0.0003259	-3.8389	-0.001865	-4.5097	-0.0021909	485.8241284872799	45.213	0.28162	45.113	44.906	45.188	-0.099445					12	7	2	0	0	0	0.027866	1	4265	4265		44.531	31.077	1	124840			33212	12295	22861	22905	38143	38143					0.15149005967259654
KLWLGEPE	8	Unmodified	_KLWLGEPE_					0	0	0		ENST00000539304.1_1_12:7344181-7354515:+|nuORF;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2544860839844	2	486.263468	970.512382	-0.54124	-0.00026319	3.9651	0.0019281	3.4239	0.0016649	486.26529960749355	65.539	1.6098	65.577	64.595	66.205	0.037384					74	43	2	0	0	0	0.027866	1	7532	7532		38.806	5.2906	1	583000			33213	5313	22862	22906	38144	38144					0.025946690402406603
KLWLGEPE	8	Unmodified	_KLWLGEPE_					0	0	0		ENST00000539304.1_1_12:7344181-7354515:+|nuORF;nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	ENST00000539304.1_1_12:7344181-7354515:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2544860839844	2	486.263468	970.512382	1.0368	0.00050415	3.1363	0.0015251	4.173	0.0020292	486.264720857642	63.892	1.4241	63.938	63.438	64.862	0.045502					72	38	3	0	0	0	0.027866	1	7532	7532		38.806	5.2906	1	1048100			33214	5313	22862	22906	38145	38145					0.025946690402406603
KLWLGTAKP	9	Unmodified	_KLWLGTAKP_					0	0	0		ENST00000470731.5_1_7:2598728-2641152:+|nuORF;nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3019714355469	2	507.310752	1012.60695	-0.43684	-0.00022161	4.4204	0.0022425	3.9836	0.0020209	507.3129944907602	56.214	0.35849	56.058	55.814	56.173	-0.15602					11	9	2	0	0	0	0.024337	1	6194	6194		49.536	8.1094	1	131550			33215	2748	22863	22907	38146	38146					0.10115227582218722
KLWMVPVT	8	Unmodified	_KLWMVPVT_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.26824951171875	2	487.280606	972.546659	-0.36114	-0.00017598	3.0851	0.0015033	2.724	0.0013273	487.28193012027947	53.893	0.66519	53.991	53.595	54.26	0.098015					33	18	3	0	0	0	0.027866	1	5723	5723		19.36	3.7238	1	276880	+		33216	22435	22864	22908	38147	38147					0.05928793927478182
KLWNVPKT	8	Unmodified	_KLWNVPKT_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.76666259765625	2	493.295102	984.575651	-0.44953	-0.00022175	2.4005	0.0011842	1.951	0.00096241	493.2964227070966	32.147	0.4618	32.21	32.003	32.465	0.062889					17	11	3	0	0	0	0.027866	1	2192	2192		6.7355	3.0512	1	79171	+		33217	22019	22865	22909	38148	38148					0.08274654548142735
KLWNVPQL	8	Unmodified	_KLWNVPQL_					0	0	0		ENSG00000179813|ENST00000313851|FAM216B	ENSG00000179813|ENST00000313851|FAM216B	ENSG00000179813|ENST00000313851|FAM216B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.2918395996094	2	499.295102	996.575651	-0.030015	-1.4986E-05	-4.0249	-0.0020096	-4.0549	-0.0020246	499.29303580504865	47.633	0.62778	47.48	47.231	47.858	-0.15301					48	18	4	0	0	0	0.68535	1	4787	4787		68.485	11.764	1	5029800			33218	8924	22866	22910	38149	38149					0.07722654548138053
KLWRKRKPPVP	11	Unmodified	_KLWRKRKPPVP_					0	0	0		nc|ENSG00000126261|Q9UBT2-2|UBA2;UBA2|p.E616Kfs*11|1|0.15|ENSG00000126261|chr19:34469144-34469147|GAGA/-|frameshift_variant;ENSG00000126261|ENST00000246548|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	nc|ENSG00000126261|Q9UBT2-2|UBA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.27679443359375	3	468.969863	1403.88776	0.29245	0.00013715	2.7441	0.0012869	3.0366	0.0014241	469.3055727654845	49.91	0.81318	49.759	49.182	49.996	-0.1512					43	21	3	0	0	0	0.024828	1	5182	5182		13.508	0.55046	1	147860			33219	4192	22867	22911	38150	38150					0.20196983292703408
KLWTAVKK	8	Unmodified	_KLWTAVKK_					0	0	0			REV__ENSG00000075826|ENST00000370345|SEC31B	REV__ENSG00000075826|ENST00000370345|SEC31B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.3006896972656	2	487.313295	972.612037	-0.7982	-0.00038897	-0.21363	-0.0001041	-1.0118	-0.00049308	487.3131332169618	58.41	0.43418	58.223	58.066	58.5	-0.18705					19	11	2	0	0	0	0.027866	1	6598	6598		29.15	7.1897	1	348560	+		33220	20557	22868	22912	38151	38151					0.12463531444836917
KLWVEKLS	8	Unmodified	_KLWVEKLS_					0	0	0		ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	ENSG00000179542|ENST00000356928|SLITRK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2801818847656	2	501.80276	1001.59097	-0.33978	-0.0001705	-3.1377	-0.0015745	-3.4775	-0.001745	501.80098929375885	34.412	0.65649	34.412	34.25	34.906	0					19	16	2	0	0	0	0.027866	1	2606	2606		16.473	1.6083	1	68809			33221	8902	22869	22913	38152	38152					0.09023521345329755
KLWVGYQYVI	10	Unmodified	_KLWVGYQYVI_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5181884765625	3	423.572775	1267.69649	-0.22626	-9.5837E-05	-3.4193	-0.0014483	-3.6456	-0.0015442	423.5712720080343	30.953	0.65145	30.712	30.497	31.149	-0.24109					32	15	3	0	0	0	0.03519	1	2023	2023		41.427	5.109	1	203430			33222	13377	22870	22914	38153	38153					0.07335437470942452
KLWVMNSQV	9	Unmodified	_KLWVMNSQV_					0	0	0		ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7665405273438	2	552.797152	1103.57975	-0.14797	-8.1795E-05	1.7374	0.00096044	1.5894	0.00087864	552.798730294275	61.568	0.41738	61.354	61.167	61.584	-0.21375					15	9	2	0	0	0	0.024427	1	6872	6872		26.693	6.6624	1	170540			33223	4300	22871	22915	38154	38154					0.0321037597952909
KLWVTVLI	8	Unmodified	_KLWVTVLI_					0	0	0			REV__ENSG00000176281|ENST00000315915|OR4K5	REV__ENSG00000176281|ENST00000315915|OR4K5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.3034973144531	2	486.318046	970.621539	0.29223	0.00014212	4.2584	0.0020709	4.5507	0.0022131	486.3209165706086	47.577	0.21817	47.391	47.239	47.457	-0.18684					11	5	3	0	0	0	0.027866	1	4666	4666		12.959	0	1	69034	+		33224	27011	22872	22916	38155	38155					0.13505299730354636
KLYAYNQV	8	Unmodified	_KLYAYNQV_					0	0	0			REV__ENSG00000176148|ENST00000334274|TCP11L1	REV__ENSG00000176148|ENST00000334274|TCP11L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2928771972656	2	499.768917	997.523281	-0.15431	-7.7117E-05	-3.3875	-0.001693	-3.5418	-0.0017701	500.2688277472237	47.459	0.49605	47.459	47.252	47.748	0					23	14	2	0	0	0	0.027866	1	4768	4768		31.955	12.595	1	405520	+		33225	26998	22873	22917	38156	38156					0.024420714145207967
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.7943725585938	2	573.795132	1145.57571	-1.1813	-0.00067783	-0.46331	-0.00026585	-1.6446	-0.00094368	574.295635284931	68.721	0.83248	68.721	68.369	69.202	0					51	21	3	0	0	0	0.016758	3	8251	8239;8251;8263		153.04	44.711	1	4246600			33226	5646	22874	22918	38157;38158;38159	38158					0.008746097574885425
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.795166015625	2	573.795132	1145.57571	0.31948	0.00018332	-1.8474	-0.00106	-1.5279	-0.00087673	574.2950384251944	69.027	1.0607	68.734	68.366	69.427	-0.29267					44	27	2	0	0	0	0.053401	3	8257	8257;8271;8283		127.46	24.563	1	4631100			33227	5646	22874	22918	38160;38161;38162	38160					0.008746097574885425
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.7952880859375	2	573.795132	1145.57571	-0.5502	-0.0003157	-0.5435	-0.00031186	-1.0937	-0.00062756	574.295803196551	68.8	1.3352	68.815	68.459	69.794	0.015121					67	34	3	0	0	0	0.03201	3	8175	8175;8186;8199		139.97	46.827	1	4198300			33228	5646	22874	22918	38163;38164;38165	38163					0.008746097574885425
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.794921875	2	573.795132	1145.57571	-0.77495	-0.00044466	0.36393	0.00020882	-0.41102	-0.00023584	573.7952877015125	69.072	0.95067	68.811	68.382	69.333	-0.26166					42	22	3	0	0	0	0.10174	2	7997	7997;8010		110.12	35.077	1	1445200			33229	5646	22874	22918	38166;38167	38166					0.008746097574885425
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	573.795132	1145.57571	0.16392	9.4058E-05	-0.55803	-0.0003202	-0.39411	-0.00022614	573.7946895235292	69.011	0.65631	68.768	68.548	69.204	-0.24277	0.0035099	-0.00019745	NaN	153.04	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1703100			33230	5646	22874	22918							0.008746097574885425
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	573.795132	1145.57571	-0.16682	-9.5721E-05	-0.31319	-0.00017971	-0.48001	-0.00027543	573.7949693729745	68.97	0.65712	68.739	68.52	69.177	-0.23048	-0.025441	8.3526E-05	NaN	153.04	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1680200			33231	5646	22874	22918							0.008746097574885425
KLYDIDVAKV	10	Unmodified	_KLYDIDVAKV_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000482216.1_1_5:120911545-120911773:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.3362426757812	2	582.337164	1162.65977	-1.1512	-0.00067039	0.38961	0.00022689	-0.7616	-0.00044351	582.337383528666	53.923	0.90297	53.923	53.655	54.558	0					69	25	5	0	0	0	1.2352E-05	2	5861	5861;5879		218.94	109.46	1	3945500			33232	10111	22875	22919	38168;38169	38168					0.08495140854347483
KLYDIDVAKV	10	Unmodified	_KLYDIDVAKV_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000482216.1_1_5:120911545-120911773:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3369140625	2	582.337164	1162.65977	-0.91033	-0.00053012	0.5048	0.00029396	-0.40553	-0.00023616	582.337306039417	54.018	0.84672	53.871	53.566	54.412	-0.14723					59	23	5	0	0	0	0.00041798	1	5849	5849		192.64	94.057	1	3360700			33233	10111	22875	22919	38170	38170					0.08495140854347483
KLYDIDVAKV	10	Unmodified	_KLYDIDVAKV_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000482216.1_1_5:120911545-120911773:-|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3363037109375	2	582.337164	1162.65977	0.0075966	4.4238E-06	-0.87099	-0.00050721	-0.86339	-0.00050279	582.3366064659089	53.698	0.83477	53.794	53.556	54.391	0.095669					59	23	5	0	0	0	0.0049715	2	5750	5750;5761		180.09	83.634	1	4418300			33234	10111	22875	22919	38171;38172	38171					0.08495140854347483
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.3029174804688	2	568.303321	1134.59209	-0.13895	-7.8968E-05	-0.40368	-0.00022941	-0.54263	-0.00030838	568.3029973247181	49.368	0.97847	49.368	49.106	50.084	0					67	26	4	0	0	0	0.013337	3	5091	5091;5102;5117		185.72	75.599	1	6587400			33235	3718	22876	22920	38173;38174;38175	38173					0.030176909235478888
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.302734375	2	568.303321	1134.59209	-0.20387	-0.00011586	-0.080068	-4.5503E-05	-0.28394	-0.00016136	568.3031831187109	49.61	0.88276	49.459	49.182	50.065	-0.1512					60	23	4	0	0	0	0.011521	3	5102	5102;5114;5127		229.33	101.87	1	6173100			33236	3718	22876	22920	38176;38177;38178	38176					0.030176909235478888
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.3035278320312	2	568.303321	1134.59209	-2.2177	-0.0012603	1.8774	0.0010669	-0.34031	-0.0001934	568.3043846782608	49.297	0.9561	49.371	49.06	50.016	0.074196					63	25	3	0	0	0	0.015032	3	5027	5005;5016;5027		199.7	94.958	1	6733100			33237	3718	22876	22920	38179;38180;38181	38181					0.030176909235478888
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	568.303321	1134.59209	-0.031576	-1.7945E-05	-0.56818	-0.0003229	-0.59975	-0.00034084	568.3027509521413	49.498	0.49292	49.397	49.147	49.64	-0.1008	-0.019751	-0.00090314	NaN	229.33	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489440			33238	3718	22876	22920							0.030176909235478888
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	568.303321	1134.59209	0.10931	6.212E-05	-0.79983	-0.00045454	-0.69052	-0.00039242	568.302741060715	49.768	0.52242	49.488	49.28	49.802	-0.27977	0.071596	-0.0011664	NaN	229.33	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536920			33239	3718	22876	22920							0.030176909235478888
KLYEEINQV	9	Unmodified	_KLYEEINQV_					0	0	0		ENSG00000119004|ENST00000356079|CYP20A1;nc|ENSG00000119004|Q6UW02-2|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	568.303321	1134.59209	0.27361	0.00015549	0.26291	0.00014941	0.53652	0.0003049	568.3026201897387	49.597	0.74732	49.416	49.191	49.939	-0.18071	5.1256E-06	4.1475E-05	NaN	229.33	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	602220			33240	3718	22876	22920							0.030176909235478888
KLYEMRMII	9	Oxidation (M)	_KLYEMRM(Oxidation (M))II_		KLYEM(0.015)RM(0.985)II		KLYEM(-18)RM(18)II	0	0	1			REV__nc|ENSG00000124532|Q9HD23-2|MRS2	REV__nc|ENSG00000124532|Q9HD23-2|MRS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.9066162109375	3	404.887489	1211.64064	0.78506	0.00031786	-0.67458	-0.00027313	0.11048	4.4732E-05	404.88730878019754	22.408	0.88119	22.408	22.106	22.987	0					45	18	4	0	0	0	0.022526	1	822	822		58.246	7.455	2	363420	+		33241	22769	22877	22921	38182	38182		680			0.04328144967462322
KLYESELTL	9	Unmodified	_KLYESELTL_					0	0	0		nc|ENSG00000196275|Q86UP8-6|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;GTF2IRD2B|p.D839N|1|0.05|ENSG00000174428|chr7:75148962-75148962|G/A|missense_variant	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3001708984375	2	548.300247	1094.58594	0.68502	0.0003756	-1.1377	-0.0006238	-0.45267	-0.0002482	548.2995739346607	59.497	1.105	59.497	58.999	60.104	0					71	29	5	0	0	0	0.015901	4	6784	6784;6793;6805;6818		157.33	76.874	1	9651700			33242	8465	22878	22922	38183;38184;38185;38186	38183					0.042431726920540314
KLYESELTL	9	Unmodified	_KLYESELTL_					0	0	0		nc|ENSG00000196275|Q86UP8-6|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;GTF2IRD2B|p.D839N|1|0.05|ENSG00000174428|chr7:75148962-75148962|G/A|missense_variant	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.30029296875	2	548.300247	1094.58594	-0.066004	-3.619E-05	1.5396	0.00084417	1.4736	0.00080798	548.3019082936212	59.644	1.2612	59.444	59.136	60.397	-0.20016					91	33	6	0	0	0	0.01452	4	6790	6780;6790;6804;6817		186.09	90.274	1	8480900			33243	8465	22878	22922	38187;38188;38189;38190	38188					0.042431726920540314
KLYESELTL	9	Unmodified	_KLYESELTL_					0	0	0		nc|ENSG00000196275|Q86UP8-6|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;GTF2IRD2B|p.D839N|1|0.05|ENSG00000174428|chr7:75148962-75148962|G/A|missense_variant	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3003540039062	2	548.300247	1094.58594	-0.38659	-0.00021197	0.040462	2.2185E-05	-0.34613	-0.00018978	548.3002203374846	59.331	0.96037	59.416	59.134	60.095	0.085686					66	25	5	0	0	0	0.013094	4	6692	6682;6692;6706;6720		171.38	88.634	1	7234700			33244	8465	22878	22922	38191;38192;38193;38194	38192					0.042431726920540314
KLYFGFVLE	9	Unmodified	_KLYFGFVLE_					0	0	0			REV__ENST00000602508.1_1_X:71997439-71997757:+|nuORF	REV__ENST00000602508.1_1_X:71997439-71997757:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2658081054688	2	558.310418	1114.60628	-0.58027	-0.00032397	0.022953	1.2815E-05	-0.55732	-0.00031116	558.3102530216728	83.754	0.94718	83.78	83.469	84.416	0.026558					26	21	2	0	0	0	0.024292	1	10412	10412		58.782	9.3404	1	55635	+		33245	35875	22879	22923	38195	38195					0.05356388142513424
KLYFNLDN	8	Unmodified	_KLYFNLDN_					0	0	0			REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3087158203125	2	513.766374	1025.5182	-0.30785	-0.00015816	-0.70231	-0.00036082	-1.0102	-0.00051899	513.7663459369473	45.938	0.7672	45.938	45.679	46.447	0					37	21	4	0	0	0	0.027866	1	4552	4552		23.042	0	1	646260	+		33246	32029	22880	22924	38196	38196					0.0064576755189591495
KLYFNLDN	8	Unmodified	_KLYFNLDN_					0	0	0			REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	REV__ENST00000414066.1_1_10:38107898-38108846:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.766374	1025.5182	-0.92102	-0.00047319	1.1698	0.00060103	0.24883	0.00012784	513.7668297613269	45.987	0.7242	45.835	45.412	46.136	-0.15157	-0.1039	0.00040618	NaN	56.721	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540340	+		33247	32029	22880	22924							0.0064576755189591495
KLYFPELHMVL	11	Unmodified	_KLYFPELHMVL_					0	0	0		ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.7781677246094	3	463.92482	1388.75263	0.11311	5.2473E-05	-0.87576	-0.00040629	-0.76265	-0.00035381	463.92460545934233	32.919	0.48792	32.725	32.534	33.022	-0.19427					19	11	2	0	0	0	0.024801	1	2298	2298		23.378	12.791	1	135730			33248	3591	22881	22925	38197	38197					0.07380322316089405
KLYGRKVI	8	Unmodified	_KLYGRKVI_					0	0	0		ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	ENSG00000112293|ENST00000230036|GPLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.249755859375	2	488.818744	975.622936	-0.16184	-7.9113E-05	-0.20908	-0.0001022	-0.37093	-0.00018132	488.8187353566876	26.014	0.3737	26.094	25.836	26.209	0.080809					10	8	2	0	0	0	0.027866	1	1204	1204		33.516	3.674	1	23787			33249	3194	22882	22926	38198	38198					0.13414933819137786
KLYKAVND	8	Unmodified	_KLYKAVND_					0	0	0			REV__TMCC1|p.E261K|1|0.18|ENSG00000172765|chr3:129671060-129671060|C/T|missense_variant	REV__TMCC1|p.E261K|1|0.18|ENSG00000172765|chr3:129671060-129671060|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.77239990234375	2	475.768917	949.523281	0.56016	0.00026651	-3.1535	-0.0015004	-2.5934	-0.0012339	475.767388853765	22.727	1.1169	22.727	21.916	23.033	0					52	23	3	0	0	0	0.027866	1	860	860		7.1934	0	1	118950	+		33250	37702	22883	22927	38199	38199					0.046500714145167876
KLYKHVVQ	8	Unmodified	_KLYKHVVQ_					0	0	0		SCAF4|p.Y601Ifs*75|1|0.3|ENSG00000156304|chr21:31690881-31690881|A/-|frameshift_variant;SCAF4|p.T676Nfs*98|1|0.25|ENSG00000156304|chr21:31688325-31688326|-/A|frameshift_variant;SCAF4|p.P668Sfs*106|1|0.25|ENSG00000156304|chr21:31688349-31688350|-/G|frameshift_variant;SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENST00000485790.1_1_21:33073145-33104086:-|nuORF	SCAF4|p.Y601Ifs*75|1|0.3|ENSG00000156304|chr21:31690881-31690881|A/-|frameshift_variant	SCAF4|p.Y601Ifs*75|1|0.3|ENSG00000156304|chr21:31690881-31690881|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8062744140625	2	507.808377	1013.6022	-0.60425	-0.00030684	-3.0616	-0.0015547	-3.6659	-0.0018616	507.80662406413126	34.517	0.92737	34.517	34.129	35.056	0					52	23	3	0	0	0	0.71833	1	2593	2593		65.803	7.0212	1	3424000			33251	6522	22884	22928	38200	38200					0.09594343439471231
KLYKKAHLYSE	11	Unmodified	_KLYKKAHLYSE_					0	0	0			REV__nc|ENSG00000142453|Q86X55-2|CARM1	REV__nc|ENSG00000142453|Q86X55-2|CARM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.26043701171875	3	460.594238	1378.76089	-0.39959	-0.00018405	2.8949	0.0013334	2.4954	0.0011493	460.59553452538637	37.436	0.74028	37.373	37.127	37.868	-0.063389					33	20	2	0	0	0	0.024727	1	3052	3052		29.551	16.043	1	901050	+		33252	24153	22885	22929	38201	38201					0.08665592557122181
KLYKVPLDTT	10	Unmodified	_KLYKVPLDTT_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3434448242188	2	589.344989	1176.67542	-0.33817	-0.0001993	-3.3398	-0.0019683	-3.6779	-0.0021676	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.1329	1	11245	11245		27.882	1.0861	1	6196800			33253	9990	22886	22930	38202	38202					0.09415427371413898
KLYLCKRE	8	Unmodified	_KLYLCKRE_					0	0	0			REV__ENST00000432983.5_2_7:33169104-33192318:+|nuORF	REV__ENST00000432983.5_2_7:33169104-33192318:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7379760742188	2	526.799694	1051.58484	-0.0057989	-3.0548E-06	2.3607	0.0012436	2.3549	0.0012406	526.800549991849	52.779	0.40104	52.589	52.43	52.831	-0.18982					14	9	2	0	0	0	0.027866	1	5517	5517		29.15	10.825	1	74163	+		33254	29454	22887	22931	38203	38203					0.06110679842140598
KLYLPQLIP	9	Unmodified	_KLYLPQLIP_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8314208984375	2	542.841885	1083.66922	0.059067	3.2064E-05	-1.8324	-0.00099473	-1.7734	-0.00096266	542.8406676622351	71.243	0.42648	71.243	71.026	71.453	0					18	10	2	0	0	0	0.024457	1	8661	8661		37.159	16.212	1	339210			33255	10202	22888	22932	38204	38204					0.13072953930554831
KLYLVAPVL	9	Unmodified	_KLYLVAPVL_					0	0	0			REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7818603515625	2	508.331153	1014.64775	-0.37918	-0.00019275	-3.5974	-0.0018287	-3.9766	-0.0020214	508.3289941814941	42.255	0.75814	42.025	41.797	42.555	-0.2303					38	20	3	0	0	0	0.024466	1	3748	3748		25.45	0	1	493570	+		33256	32000	22889	22933	38205	38205					0.1410156890183316
KLYLVKNPE	9	Unmodified	_KLYLVKNPE_					0	0	0			REV__ENSG00000089682|ENST00000685964|RBM41	REV__ENSG00000089682|ENST00000685964|RBM41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3035888671875	2	552.326599	1102.63865	-0.4611	-0.00025468	-3.8681	-0.0021364	-4.3292	-0.0023911	552.3241887096046	92.709	0.79636	92.709	92.255	93.051	0					25	18	2	0	0	0	0.024438	1	11754	11754		36.447	0	1	52680	+		33257	20858	22890	22934	38206	38206					0.09143175545523263
KLYQQILF	8	Unmodified	_KLYQQILF_					0	0	0			REV__RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	REV__RECQL|p.I572Kfs*2|1|0.17|ENSG00000004700|chr12:21471051-21471052|-/TT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.7662963867188	2	526.810585	1051.60662	-0.53543	-0.00028207	3.1289	0.0016483	2.5934	0.0013663	526.8121569209276	58.142	0.54515	58.142	57.835	58.38	0					22	14	2	0	0	0	0.027866	1	6569	6569		12.959	0	1	694500	+		33258	19782	22891	22935	38207	38207					0.08287807862370755
KLYQRDLEV	9	Unmodified	_KLYQRDLEV_					0	0	0		nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.32470703125	2	582.324588	1162.63462	-1.0153	-0.00059125	1.0711	0.00062371	0.05575	3.2464E-05	582.3250304782069	40.363	1.0902	40.363	40.099	41.189	0					89	30	4	0	0	0	0.015752	2	3549	3539;3549		158.07	47.955	1	4354300			33259	3096	22892	22936	38208;38209	38209					0.05981086051792772
KLYQRDLEV	9	Unmodified	_KLYQRDLEV_					0	0	0		nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3245849609375	2	582.324588	1162.63462	-0.25107	-0.0001462	0.39643	0.00023085	0.14536	8.4648E-05	582.3246322119535	40.473	1.25	40.36	40.055	41.305	-0.11223					98	34	4	0	0	0	0.013924	1	3551	3551		167.23	68.599	1	3941800			33260	3096	22892	22936	38210	38210					0.05981086051792772
KLYQRDLEV	9	Unmodified	_KLYQRDLEV_					0	0	0		nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3244018554688	2	582.324588	1162.63462	-0.25329	-0.0001475	0.20118	0.00011715	-0.052108	-3.0344E-05	582.3245684548933	40.572	1.3951	40.595	40.311	41.706	0.023006					104	39	4	0	0	0	0.013924	2	3530	3518;3530		167.23	68.599	1	4010400			33261	3096	22892	22936	38211;38212	38212					0.05981086051792772
KLYQTPLEL	9	Unmodified	_KLYQTPLEL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.818115234375	2	552.818607	1103.62266	-0.913	-0.00050472	0.27675	0.00015299	-0.63625	-0.00035173	552.8185727809596	62.619	0.71621	62.619	62.409	63.126	0					49	17	4	0	0	0	0.027092	3	7297	7286;7297;7311		143.89	47.696	1	3790400			33262	3057	22893	22937	38213;38214;38215	38214					0.07499469308618245
KLYQTPLEL	9	Unmodified	_KLYQTPLEL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8182983398438	2	552.818607	1103.62266	-1.3085	-0.00072335	0.68975	0.0003813	-0.61873	-0.00034204	552.8188180137198	62.866	0.63071	62.627	62.394	63.025	-0.23926					44	15	4	0	0	0	0.014918	3	7296	7286;7296;7309		162.25	57.506	1	3846500			33263	3057	22893	22937	38216;38217;38218	38217					0.07499469308618245
KLYQTPLEL	9	Unmodified	_KLYQTPLEL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8182983398438	2	552.818607	1103.62266	-0.31326	-0.00017317	-0.45506	-0.00025156	-0.76831	-0.00042474	552.8182440376617	62.594	0.80531	62.657	62.401	63.207	0.062767					53	19	4	0	0	0	0.014918	3	7219	7196;7206;7219		162.25	46.763	1	3954000			33264	3057	22893	22937	38219;38220;38221	38221					0.07499469308618245
KLYRLQLSV	9	Unmodified	_KLYRLQLSV_					0	0	0		nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.348876953125	2	560.347866	1118.68118	-0.18989	-0.0001064	3.1646	0.0017733	2.9747	0.0016669	560.3495502471608	105.99	0.56302	105.99	105.7	106.27	-0.0013123					45	19	3	0	0	0	0.67687	1	13556	13556		47.657	8.4045	1	423880			33265	18266	22894	22938	38222	38222					0.1265857067376146
KLYSSEQLLI	10	Unmodified	_KLYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.3424072265625	2	597.342446	1192.67034	-0.57495	-0.00034344	0.50209	0.00029992	-0.072861	-4.3523E-05	597.3426376808774	63.821	0.97857	63.57	63.336	64.315	-0.25141					74	26	4	0	0	0	0.40114	1	7465	7465		98.582	0	1	3688200			33266	7794	22895	22939	38223	38223					0.08171123508827804
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant;CUL3-FAM124B|2|fusion;CUL3-FAM124B|1|fusion	nc|ENSG00000036257|Q13618-2|CUL3;CUL3-FAM124B|2|fusion	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8168334960938	2	539.816399	1077.61824	-0.3545	-0.00019136	0.73488	0.0003967	0.38038	0.00020534	539.816747087408	40.802	0.5349	40.802	40.516	41.051	0					51	14	4	0	0	0	0.247	1	3627	3627		82.75	0	1	4717200			33267	1039;608	22896	22940	38224	38224					0.0825400488570267
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant;CUL3-FAM124B|2|fusion;CUL3-FAM124B|1|fusion	nc|ENSG00000036257|Q13618-2|CUL3;CUL3-FAM124B|2|fusion	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.816650390625	2	539.816399	1077.61824	0.082078	4.4307E-05	0.096711	5.2206E-05	0.17879	9.6513E-05	539.8164140287025	40.941	0.57523	40.818	40.51	41.086	-0.12317					50	15	4	0	0	0	0.11727	3	3633	3621;3633;3647		106.68	18.929	1	4508900			33268	1039;608	22896	22940	38225;38226;38227	38226					0.0825400488570267
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant;CUL3-FAM124B|2|fusion;CUL3-FAM124B|1|fusion	nc|ENSG00000036257|Q13618-2|CUL3;CUL3-FAM124B|2|fusion	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.816399	1077.61824	-0.77536	-0.00041855	0.58192	0.00031413	-0.19344	-0.00010442	539.816693941647	40.868	0.53083	40.733	40.454	40.985	-0.13554	-0.1214	-0.00019237	NaN	106.68	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497110			33269	1039;608	22896	22940							0.0825400488570267
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant;CUL3-FAM124B|2|fusion;CUL3-FAM124B|1|fusion	nc|ENSG00000036257|Q13618-2|CUL3;CUL3-FAM124B|2|fusion	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.816399	1077.61824	-0.5358	-0.00028923	0.52371	0.00028271	-0.012087	-6.5247E-06	539.8165408910529	41.09	0.50456	40.862	40.616	41.121	-0.2278	0.0079265	-0.00025522	NaN	106.68	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424100			33270	1039;608	22896	22940							0.0825400488570267
KLYTGLREV	9	Unmodified	_KLYTGLREV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant;CUL3-FAM124B|2|fusion;CUL3-FAM124B|1|fusion	nc|ENSG00000036257|Q13618-2|CUL3;CUL3-FAM124B|2|fusion	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.816399	1077.61824	-1.8143	-0.00097941	1.4558	0.00078585	-0.35857	-0.00019356	539.8170871523776	41.136	0.57615	40.906	40.659	41.235	-0.23029	0.051596	0.00075106	NaN	106.68	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460270			33271	1039;608	22896	22940							0.0825400488570267
KLYVSCMGGQL	11	Unmodified	_KLYVSCMGGQL_					0	0	0			REV__ENST00000600818.1_1_19:39966660-39967036:+|nuORF	REV__ENST00000600818.1_1_19:39966660-39967036:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.53912353515625	3	400.203477	1197.5886	0.13073	5.2317E-05	1.557	0.00062312	1.6877	0.00067543	400.203701291754	25.724	1.2487	25.497	24.708	25.957	-0.22683					82	29	5	0	0	0	0.95911	1	1265	1265		45.908	0.88592	1	3056700	+		33272	35850	22897	22941	38228	38228					-0.0022901844627085666
KLYWLVTQN	9	Unmodified	_KLYWLVTQN_					0	0	0		ENSG00000089163|ENST00000202967|SIRT4;ENST00000537892.1_1_12:120741745-120750480:+|nuORF	ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.306640625	2	582.824224	1163.63389	-1.9892	-0.0011594	1.8086	0.0010541	-0.18061	-0.00010526	582.82521727407	62.717	0.44941	62.717	62.489	62.938	0					17	10	2	0	0	0	0.023635	1	7291	7291		76.774	16.656	1	457550			33273	1898	22898	22942	38229	38229					0.05862291402763731
KLYYLGRRLWA	11	Unmodified	_KLYYLGRRLWA_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7430725097656	3	480.282106	1437.82449	-0.2424	-0.00011642	-4.3745	-0.002101	-4.6169	-0.0022174	480.279362281826	45.152	1.1355	45.196	44.756	45.892	0.043877					74	32	4	0	0	0	0.024851	1	4333	4333		14.086	4.8742	1	1157100	+		33274	28447	22899	22943	38230	38230					0.12308997784839448
KMADIEYRL	9	Oxidation (M)	_KM(Oxidation (M))ADIEYRL_		KM(1)ADIEYRL		KM(100)ADIEYRL	0	0	1		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	577.7968139648438	2	577.797349	1153.58014	-0.82511	-0.00047675	0.79168	0.00045743	-0.033427	-1.9314E-05	577.7976955563463	42.504	1.0664	42.504	42.12	43.186	0					58	29	3	0	0	0	0.14181	2	3929	3916;3929		101.25	35.787	1	3208000			33275	3116	22900	22944	38231;38232	38232		114			0.00949750908716851
KMADIEYRL	9	Oxidation (M)	_KM(Oxidation (M))ADIEYRL_		KM(1)ADIEYRL		KM(88)ADIEYRL	0	0	1		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.7966918945312	2	577.797349	1153.58014	-0.24869	-0.00014369	0.20363	0.00011766	-0.045062	-2.6037E-05	577.7973994434657	42.691	0.9318	42.552	42.278	43.21	-0.13929					67	25	4	0	0	0	0.20652	1	3935	3935		88.177	34.825	1	2984300			33276	3116	22900	22944	38233	38233		114			0.00949750908716851
KMADIEYRL	9	Oxidation (M)	_KM(Oxidation (M))ADIEYRL_		KM(1)ADIEYRL		KM(110)ADIEYRL	0	0	1		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	577.796875	2	577.797349	1153.58014	-0.16954	-9.7961E-05	0.37858	0.00021874	0.20904	0.00012078	577.7974593803698	42.635	0.86911	42.661	42.393	43.262	0.026012					55	23	3	0	0	0	0.10464	1	3878	3878		109.48	53.045	1	3494100			33277	3116	22900	22944	38234	38234		114			0.00949750908716851
KMADIEYRL	9	Oxidation (M)	_KM(Oxidation (M))ADIEYRL_					0	0	1		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.797349	1153.58014	-0.77814	-0.00044961	0.51831	0.00029948	-0.25984	-0.00015013	577.7975382145108	42.803	0.38393	42.565	42.416	42.8	-0.23736	-0.017012	4.4646E-05	NaN	109.48	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100780			33278	3116	22900	22944				114			0.00949750908716851
KMADIEYRL	9	Oxidation (M)	_KM(Oxidation (M))ADIEYRL_					0	0	1		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	577.797349	1153.58014	-0.84461	-0.00048801	0.90281	0.00052164	0.058196	3.3625E-05	577.7980051567426	42.856	0.38657	42.63	42.447	42.833	-0.22597	0.047794	0.00048897	NaN	109.48	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87596			33279	3116	22900	22944				114			0.00949750908716851
KMAECWSNHI	10	Unmodified	_KMAECWSNHI_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.8998107910156	3	406.851326	1217.53215	0.53432	0.00021739	-1.8675	-0.0007598	-1.3332	-0.00054241	406.84977609375443	23.951	0.26669	23.736	23.599	23.866	-0.2151					8	5	2	0	0	0	0.03519	1	988	988		16.53	0.6092	1	27723	+		33280	23311	22901	22945	38235	38235					-0.06791646282954389
KMAECWSNHI	10	Unmodified	_KMAECWSNHI_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	406.851326	1217.53215	0.64437	0.00026216	-3.6439	-0.0014825	-2.9995	-0.0012204	406.84979858576827	23.628	0.38103	23.628	23.441	23.822	0	-0.0066078	-0.00013129	NaN	16.53	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49300	+		33281	23311	22901	22945							-0.06791646282954389
KMAECWSNHI	10	Unmodified	_KMAECWSNHI_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	406.851326	1217.53215	-0.18402	-7.4871E-05	-3.1761	-0.0012922	-3.3602	-0.0013671	406.85007205266186	23.622	0.47169	23.561	23.428	23.899	-0.06086	-0.073854	0.00043961	NaN	16.53	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47428	+		33282	23311	22901	22945							-0.06791646282954389
KMAECWSNHI	10	Unmodified	_KMAECWSNHI_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	406.851326	1217.53215	1.2295	0.00050021	-4.1383	-0.0016837	-2.9088	-0.0011835	406.84960992239627	23.539	0.4737	23.615	23.392	23.866	0.076241	-0.020004	-0.00073472	NaN	16.53	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62059	+		33283	23311	22901	22945							-0.06791646282954389
KMAEMLVEL	9	Oxidation (M)	_KMAEM(Oxidation (M))LVEL_		KMAEM(1)LVEL		KM(-38)AEM(38)LVEL	0	0	1		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.275146484375	2	540.277403	1078.54025	-0.065381	-3.5324E-05	0.17717	9.5723E-05	0.11179	6.0399E-05	540.2772541142305	58.561	1.4982	58.561	57.872	59.37	0					92	40	3	0	0	0	0.18994	1	6616	6616		90.601	8.3603	2	2828000			33284	8855	22902	22946	38236	38236		372			0.0041248791380894545
KMAEMLVEL	9	Oxidation (M)	_KMAEM(Oxidation (M))LVEL_		KM(0.13)AEM(0.87)LVEL		KM(-8.3)AEM(8.3)LVEL	0	0	1		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2766723632812	2	540.277403	1078.54025	-0.61215	-0.00033073	0.40017	0.00021621	-0.21197	-0.00011452	540.2774714787207	61.275	1.8901	61.054	59.955	61.845	-0.22052					119	49	3	0	0	0	0.15366	1	7045	7045		98.629	10.933	2	3316300			33285	8855	22902	22946	38237	38237		372			0.0041248791380894545
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_		KM(1)AGIGIREA		KM(96)AGIGIREA	0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2924194335938	2	531.292233	1060.56991	-0.59506	-0.00031615	0.1877	9.9723E-05	-0.40736	-0.00021643	531.2922927377956	29.999	0.88373	29.755	29.4	30.284	-0.24415					52	20	4	0	0	0	0.42599	4	1883	1862;1871;1883;1895		96.034	32.454	1	6545500		+	33286	524	22903	22947	38238;38239;38240;38241	38240		13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_		KM(1)AGIGIREA		KM(91)AGIGIREA	0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2929077148438	2	531.292233	1060.56991	-0.42397	-0.00022525	0.32628	0.00017335	-0.097687	-5.19E-05	531.2921975452235	31.277	3.0275	31.036	30.038	33.065	-0.24109					182	73	4	0	0	0	0.47249	6	2070	1988;2022;2034;2057;2070;2084		91.265	19.388	1	3284700		+	33287	524	22903	22947	38242;38243;38244;38245;38246;38247	38246		13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_		KM(1)AGIGIREA		KM(120)AGIGIREA	0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2922973632812	2	531.292233	1060.56991	-1.2779	-0.00067894	0.73298	0.00038943	-0.54492	-0.00028951	531.2925803063023	29.896	0.76435	29.724	29.406	30.17	-0.17258					53	17	4	0	0	0	0.18296	4	1857	1846;1857;1870;1882		123.21	30.013	1	6588200		+	33288	524	22903	22947	38248;38249;38250;38251	38249		13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_		KM(1)AGIGIREA		KM(78)AGIGIREA	0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.29345703125	2	531.292233	1060.56991	-0.79244	-0.00042102	0.56806	0.00030181	-0.22438	-0.00011921	531.2923680423469	31.232	2.9557	31.047	30.076	33.031	-0.18503					187	71	4	0	0	0	0.58878	4	2057	2023;2035;2045;2057		78.264	13.822	1	4279400		+	33289	524	22903	22947	38252;38253;38254;38255	38255		13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_		KM(1)AGIGIREA		KM(110)AGIGIREA	0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2924194335938	2	531.292233	1060.56991	-0.24223	-0.0001287	-0.4184	-0.00022229	-0.66063	-0.00035099	531.2919576863535	29.92	0.84159	29.771	29.418	30.259	-0.14952					60	19	4	0	0	0	0.24941	4	1845	1833;1845;1857;1869		114.89	43.017	1	6962000		+	33290	524	22903	22947	38256;38257;38258;38259	38257		13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_		KM(1)AGIGIREA		KM(69)AGIGIREA	0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2939453125	2	531.292233	1060.56991	-0.42291	-0.00022469	0.18955	0.00010071	-0.23335	-0.00012398	531.2921338159555	31.304	2.7943	31.152	30.137	32.932	-0.15231					184	68	4	0	0	0	0.67616	4	2058	2010;2022;2046;2058		68.846	11.667	1	3999900		+	33291	524	22903	22947	38260;38261;38262;38263	38263		13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_					0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.292233	1060.56991	-1.207	-0.00064126	3.4144	0.0018141	2.2075	0.0011728	531.7965965560014	31.386	1.0306	31.386	30.879	31.91	0	0.14826	0.0032099	NaN	91.265	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83973		+	33292	524	22903	22947				13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_					0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.292233	1060.56991	-0.62907	-0.00033422	2.0928	0.0011119	1.4637	0.00077766	531.2922896339463	31.496	1.1794	31.508	31.041	32.221	0.011797	0.27003	0.0018055	NaN	91.265	37	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127840		+	33293	524	22903	22947				13			0.042051879741620724
KMAGIGIREA	10	Oxidation (M)	_KM(Oxidation (M))AGIGIREA_					0	0	1		CON__P19012	CON__P19012	CON__P19012	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.292233	1060.56991	-0.51822	-0.00027532	1.6457	0.00087434	1.1275	0.00059902	531.2925742927043	31.229	1.6772	31.298	30.414	32.092	0.068962	0.05998	0.0013304	NaN	91.265	56	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108900		+	33294	524	22903	22947				13			0.042051879741620724
KMAGIGIREA	10	Unmodified	_KMAGIGIREA_					0	0	0		CON__P19012	CON__P19012	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2946166992188	2	523.294776	1044.575	0.32061	0.00016777	-0.24592	-0.00012869	0.074691	3.9085E-05	523.2947323964279	35.801	1.527	35.603	35.169	36.696	-0.19829					114	40	4	0	0	0	0.37307	2	2741	2741;2753		101.46	21.747	1	17849000		+	33295	524	22903	22948	38264;38265	38264					0.05449491836770903
KMALQQEGF	9	Unmodified	_KMALQQEGF_					0	0	0		nc|ENSG00000125851|P16519-2|PCSK2;nc|ENSG00000125851|P16519-3|PCSK2;ENSG00000125851|ENST00000262545|PCSK2	nc|ENSG00000125851|P16519-2|PCSK2	nc|ENSG00000125851|P16519-2|PCSK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2985229492188	2	526.265684	1050.51682	-0.84443	-0.00044439	-1.3593	-0.00071535	-2.2037	-0.0011597	526.263888594627	38.507	0.56891	38.425	38.149	38.718	-0.082512					25	14	3	0	0	0	0.023239	1	3227	3227		96.19	29.761	1	134360			33296	4152	22904	22949	38266	38266					-0.00642189808513649
KMAYADEGDAY	11	Unmodified	_KMAYADEGDAY_					0	0	0			REV__ENST00000467451.1_1_X:153196080-153197612:-|nuORF	REV__ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.89996337890625	3	411.841261	1232.50195	-0.37151	-0.000153	3.4231	0.0014098	3.0516	0.0012568	411.84323563978506	28.557	0.75087	28.405	28.203	28.954	-0.15195					22	17	2	0	0	0	0.024723	1	1669	1669		31.068	15.735	1	68628	+		33297	21277	22905	22950	38267	38267					-0.10499726467151049
KMAYADEGDAY	11	Unmodified	_KMAYADEGDAY_					0	0	0			REV__ENST00000467451.1_1_X:153196080-153197612:-|nuORF	REV__ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	411.841261	1232.50195	-0.059859	-2.4652E-05	3.0486	0.0012555	2.9887	0.0012309	411.84260449485146	28.548	0.4152	28.548	28.362	28.778	0	0.07674	-0.0016017	NaN	25.068	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45372	+		33298	21277	22905	22950							-0.10499726467151049
KMAYADEGDAY	11	Unmodified	_KMAYADEGDAY_					0	0	0			REV__ENST00000467451.1_1_X:153196080-153197612:-|nuORF	REV__ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	411.841261	1232.50195	-0.011954	-4.9231E-06	4.3081	0.0017742	4.2961	0.0017693	411.84288813286986	28.55	0.3817	28.546	28.242	28.624	-0.0042019	0.074678	-4.5591E-05	NaN	25.068	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28391	+		33299	21277	22905	22950							-0.10499726467151049
KMCCFGYLSL	10	2 Carbamidomethyl (C),Oxidation (M)	_KM(Oxidation (M))C(Carbamidomethyl (C))C(Carbamidomethyl (C))FGYLSL_	KMC(1)C(1)FGYLSL	KM(1)CCFGYLSL	KMC(44)C(44)FGYLSL	KM(44)CCFGYLSL	0	2	1		ENST00000373275.4_1_X:79930042-79930108:-|nuORF	ENST00000373275.4_1_X:79930042-79930108:-|nuORF	ENST00000373275.4_1_X:79930042-79930108:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	647.7861328125	2	647.785069	1293.55559	0.86446	0.00055998	0.21771	0.00014103	1.0822	0.00070101	647.7852078522478	52.907	0.97212	52.648	52.326	53.298	-0.25838					64	24	5	0	0	0	1.0142	1	5525	5525		44.117	8.9386	1	3482400			33300	13072	22906	22951	38268	38268	176;177	485			-0.07944968560627785
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.N13K|1|0.21|ENSG00000167778|chr12:53077246-53077246|G/T|missense_variant	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7738037109375	2	574.773874	1147.53319	-0.25577	-0.00014701	-0.10357	-5.9532E-05	-0.35935	-0.00020654	574.7737470025816	49.181	0.57092	48.999	48.773	49.344	-0.18206					33	14	3	0	0	0	0.15388	1	4921	4921		98.582	20.318	1	1229900			33301	7737	22907	22952	38269	38269					-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.N13K|1|0.21|ENSG00000167778|chr12:53077246-53077246|G/T|missense_variant	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	574.773874	1147.53319	-0.62524	-0.00035937	0.44662	0.0002567	-0.17862	-0.00010267	574.7740081534533	49.022	0.68539	48.921	48.655	49.34	-0.1008	-0.074141	0.00042904	NaN	98.582	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1451500			33302	7737	22907	22952							-0.03467108642416861
KMDDLNLHY	9	Unmodified	_KMDDLNLHY_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF;SPRYD3|p.N13K|1|0.21|ENSG00000167778|chr12:53077246-53077246|G/T|missense_variant	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	574.773874	1147.53319	-0.30178	-0.00017345	-0.052844	-3.0373E-05	-0.35462	-0.00020383	574.7736715323074	49.345	0.72198	49.065	48.825	49.547	-0.27977	0.070096	-0.00014512	NaN	98.582	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1663700			33303	7737	22907	22952							-0.03467108642416861
KMDESKHEI	9	Unmodified	_KMDESKHEI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.7717895507812	2	558.771331	1115.52811	0.55279	0.00030888	-0.56218	-0.00031413	-0.0093947	-5.2495E-06	558.7708447857885	20.896	0.63933	20.965	20.71	21.349	0.068901					24	12	3	0	0	0	0.54416	1	558	558		56.434	9.977	1	147420			33304	5087	22908	22953	38270	38270					-0.025034125050069633
KMDEVLYSI	9	Unmodified	_KMDEVLYSI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.2796020507812	2	549.281	1096.54745	1.2408	0.00068157	-1.4603	-0.00080211	-0.21945	-0.00012054	549.2800505822635	63.877	0.50362	63.877	63.558	64.062	0					40	13	4	0	0	0	0.094442	1	7496	7496		112.41	43.624	1	2198000			33305	5523	22909	22954	38271	38271					0.0030354378586707753
KMDEVLYSI	9	Unmodified	_KMDEVLYSI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.2803344726562	2	549.281	1096.54745	-0.42462	-0.00023324	0.023316	1.2807E-05	-0.40131	-0.00022043	549.2808217131258	64.091	0.50512	63.84	63.553	64.059	-0.2514					40	13	4	0	0	0	0.025498	2	7502	7502;7514		145.16	22.98	1	2054900			33306	5523	22909	22954	38272;38273	38272					0.0030354378586707753
KMDEVLYSI	9	Unmodified	_KMDEVLYSI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.279296875	2	549.281	1096.54745	1.2475	0.00068523	-1.727	-0.00094861	-0.47949	-0.00026338	549.2799031385746	63.872	0.53422	63.918	63.583	64.117	0.045502					34	14	3	0	0	0	0.077175	1	7419	7419		118.74	30.989	1	2494000			33307	5523	22909	22954	38274	38274					0.0030354378586707753
KMDLQEKNT	9	Unmodified	_KMDLQEKNT_					0	0	0		ENST00000228438.2_2_12:10005896-10005944:-|nuORF	ENST00000228438.2_2_12:10005896-10005944:-|nuORF	ENST00000228438.2_2_12:10005896-10005944:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7940063476562	2	553.779156	1105.54376	-0.54537	-0.00030202	-3.4045	-0.0018854	-3.9499	-0.0021874	554.2787563672362	66.57	0.45498	66.324	65.931	66.386	-0.24517					17	11	2	0	0	0	0.024466	1	7584	7584		31.53	3.6476	1	264440			33308	11216	22910	22955	38275	38275					-0.004791259879766585
KMDNSRDLNL	10	Unmodified	_KMDNSRDLNL_					0	0	0		ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0	ENSG00000161849|ENST00000257951|KRT84	ENSG00000161849|ENST00000257951|KRT84	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5361022949219	3	402.536283	1204.58702	0.62353	0.00025099	-0.23362	-9.4041E-05	0.38991	0.00015695	402.5360161738049	35.154	4.3138	34.941	33.044	37.357	-0.21246					228	111	6	0	0	0	0.99657	1	2629	2629		46.457	5.0302	1	1567700		+	33309	561	22911	22956	38276	38276					-0.007089362106853514
KMDNSRDLNL	10	Unmodified	_KMDNSRDLNL_					0	0	0		ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0	ENSG00000161849|ENST00000257951|KRT84	ENSG00000161849|ENST00000257951|KRT84	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5364685058594	3	402.536283	1204.58702	-0.7007	-0.00028206	1.0605	0.00042688	0.35977	0.00014482	402.5365031423494	34.967	4.3177	34.78	32.897	37.215	-0.18675					221	111	5	0	0	0	0.93809	1	2598	2598		51.528	8.1092	1	1468600		+	33310	561	22911	22956	38277	38277					-0.007089362106853514
KMDPGHMGW	9	Unmodified	_KMDPGHMGW_					0	0	0		ENST00000379053.4_1_20:5482206-5485036:-|nuORF	ENST00000379053.4_1_20:5482206-5485036:-|nuORF	ENST00000379053.4_1_20:5482206-5485036:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7294311523438	2	529.730954	1057.44736	0.36473	0.00019321	-1.8214	-0.00096487	-1.4567	-0.00077166	529.7297285115018	50.907	0.80046	50.795	50.488	51.288	-0.11163					53	20	4	0	0	0	0.77768	1	5222	5222		40.778	7.2626	1	2703200			33311	13254	22912	22957	38278	38278					-0.07906972028899872
KMEKLQKIND	10	Unmodified	_KMEKLQKIND_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.23193359375	3	416.232312	1245.67511	-0.81461	-0.00033907	-0.97352	-0.00040521	-1.7881	-0.00074428	416.2319342734464	21.111	2.258	20.898	20.525	22.783	-0.2128					156	46	7	0	0	0	1.1123	1	653	653		31.068	1.5174	1	3140900	+		33312	20735	22913	22958	38279	38279					0.06209684379928149
KMELVARHTQ	10	Unmodified	_KMELVARHTQ_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.9062805175781	3	404.888768	1211.64448	0.22157	8.9712E-05	-3.1342	-0.001269	-2.9127	-0.0011793	404.8874762567615	22.464	1.031	22.389	21.89	22.921	-0.075294					61	21	5	0	0	0	0.03519	1	808	808		47.228	0	1	322410	+		33313	29003	22914	22959	38280	38280					0.04711950785554109
KMENGQITPD	10	Unmodified	_KMENGQITPD_					0	0	0		nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L;nc|ENSG00000165359|Q5JSJ4-4|INTS6L	nc|ENSG00000165359|Q5JSJ4|INTS6L	nc|ENSG00000165359|Q5JSJ4|INTS6L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.7689819335938	2	566.768788	1131.52302	3.6472	0.0020671	-3.377	-0.001914	0.27021	0.00015315	566.7666770646631	18.063	0.54772	17.82	17.627	18.175	-0.24256					19	10	3	0	0	0	1.0816	1	238	238		35.152	5.982	1	151370			33314	7404	22915	22960	38281	38281					-0.03747716367638532
KMFIGGLSW	9	Unmodified	_KMFIGGLSW_					0	0	0		ENSG00000135097|ENST00000257552|MSI1;ENST00000579531.5_1_17:55334408-55351634:+|nuORF;HNRNPD|p.F117Vfs*6|1|0.37|ENSG00000138668|chr4:82359581-82359582|-/C|frameshift_variant;HNRNPDL|p.E246Tfs*3|1|0.21|ENSG00000152795|chr4:82428053-82428057|CTTCA/-|frameshift_variant;nc|ENSG00000153944|Q96DH6-2|MSI2;ENSG00000153944|ENST00000284073|MSI2;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000135097|ENST00000257552|MSI1;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.7754516601562	2	519.775688	1037.53682	-0.64931	-0.00033749	0.095973	4.9885E-05	-0.55334	-0.00028761	519.775824152622	75.835	1.0696	75.562	75.306	76.376	-0.27266					63	26	4	0	0	0	0.013995	3	8972	8962;8972;8986		181.81	85.991	1	4738800			33315	4860;5263;6300	22916	22961	38282;38283;38284	38283					0.019556059221258693
KMFIGGLSW	9	Unmodified	_KMFIGGLSW_					0	0	0		ENSG00000135097|ENST00000257552|MSI1;ENST00000579531.5_1_17:55334408-55351634:+|nuORF;HNRNPD|p.F117Vfs*6|1|0.37|ENSG00000138668|chr4:82359581-82359582|-/C|frameshift_variant;HNRNPDL|p.E246Tfs*3|1|0.21|ENSG00000152795|chr4:82428053-82428057|CTTCA/-|frameshift_variant;nc|ENSG00000153944|Q96DH6-2|MSI2;ENSG00000153944|ENST00000284073|MSI2;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000135097|ENST00000257552|MSI1;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.7756958007812	2	519.775688	1037.53682	0.046074	2.3948E-05	-0.50711	-0.00026358	-0.46103	-0.00023963	519.7755157724608	75.799	1.4958	75.54	75.279	76.775	-0.25866					87	36	4	0	0	0	0.015925	3	8983	8973;8983;8996		157.21	55.41	1	4783400			33316	4860;5263;6300	22916	22961	38285;38286;38287	38286					0.019556059221258693
KMFIGGLSW	9	Unmodified	_KMFIGGLSW_					0	0	0		ENSG00000135097|ENST00000257552|MSI1;ENST00000579531.5_1_17:55334408-55351634:+|nuORF;HNRNPD|p.F117Vfs*6|1|0.37|ENSG00000138668|chr4:82359581-82359582|-/C|frameshift_variant;HNRNPDL|p.E246Tfs*3|1|0.21|ENSG00000152795|chr4:82428053-82428057|CTTCA/-|frameshift_variant;nc|ENSG00000153944|Q96DH6-2|MSI2;ENSG00000153944|ENST00000284073|MSI2;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	ENSG00000135097|ENST00000257552|MSI1;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7752685546875	2	519.775688	1037.53682	0.26366	0.00013704	-1.0349	-0.0005379	-0.7712	-0.00040085	519.7752806848038	75.624	1.6577	75.449	75.194	76.852	-0.17548					82	40	4	0	0	0	0.0152	3	8944	8933;8944;8956		191.63	95.435	1	5041900			33317	4860;5263;6300	22916	22961	38288;38289;38290	38289					0.019556059221258693
KMFSDEILL	9	Oxidation (M)	_KM(Oxidation (M))FSDEILL_		KM(1)FSDEILL		KM(93)FSDEILL	0	0	1		nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;ENSG00000178202|ENST00000323468|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2889404296875	2	556.288825	1110.5631	-0.42162	-0.00023454	0.674	0.00037494	0.25238	0.0001404	556.2891207493828	65.176	1.4239	65.176	64.8	66.224	0					114	38	5	0	0	0	0.17822	2	7689	7689;7712		93.195	10.955	1	14169000			33318	8801	22917	22962	38291;38292	38291		370			0.01223830302933493
KMFSDEILL	9	Oxidation (M)	_KM(Oxidation (M))FSDEILL_					0	0	1		nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;ENSG00000178202|ENST00000323468|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.288825	1110.5631	-0.39284	-0.00021853	0.0037305	2.0752E-06	-0.38911	-0.00021646	556.2894320129368	65.469	0.90604	65.227	64.883	65.789	-0.24145	-0.011323	-0.00085501	NaN	93.195	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107300			33319	8801	22917	22962				370			0.01223830302933493
KMFSDEILL	9	Unmodified	_KMFSDEILL_					0	0	0		nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;ENSG00000178202|ENST00000323468|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2913208007812	2	548.291368	1094.56818	0.021529	1.1804E-05	-0.21305	-0.00011681	-0.19152	-0.00010501	548.291168063182	72.455	1.0509	72.465	72.094	73.145	0.0097733					55	25	3	0	0	0	0.45795	1	8727	8727		62.107	1.9892	1	8630200			33320	8801	22917	22963	38293	38293					0.02468134165542324
KMFVGGLSW	9	Unmodified	_KMFVGGLSW_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7877807617188	2	512.767863	1023.52117	0.64238	0.00032939	-0.27629	-0.00014167	0.36609	0.00018772	512.767609673691	71.192	1.128	70.986	70.571	71.699	-0.20613					60	26	4	0	0	0	0.024292	1	8295	8295		68.787	26.391	1	1851900			33321	10001	22918	22964	38294	38294					0.010353194050708225
KMGKKKTLV	9	Unmodified	_KMGKKKTLV_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-4|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.832275390625	2	516.833537	1031.65252	-0.054355	-2.8092E-05	-3.67	-0.0018968	-3.7244	-0.0019249	516.8315335799879	53.822	1.2399	53.576	53.275	54.515	-0.2453					89	37	5	0	0	0	0.31037	1	5639	5639		74.255	8.7897	1	13185000			33322	5132	22919	22965	38295	38295					0.1379612977295892
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.76434326171875	2	468.764789	935.515025	0.58916	0.00027618	-0.78118	-0.00036619	-0.19202	-9.0013E-05	468.76444033121885	71.945	1.5778	71.945	71.604	73.182	0					103	39	4	0	0	0	0.44658	6	8724	8724;8736;8746;8759;8770;8783		90.777	16.802	1	8782600			33323	1820	22920	22966	38296;38297;38298;38299;38300;38301	38296					0.0446880117353885
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.7645568847656	2	468.764789	935.515025	0.87712	0.00041116	-1.0692	-0.0005012	-0.19209	-9.0043E-05	468.76427924775425	72.313	1.6079	72.031	71.695	73.303	-0.28124					100	40	4	0	0	0	0.2917	4	8762	8738;8751;8762;8786		115.46	17.16	1	8879100			33324	1820	22920	22966	38302;38303;38304;38305	38304					0.0446880117353885
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.76513671875	2	468.764789	935.515025	1.1508	0.00053947	-1.2335	-0.00057823	-0.082683	-3.8759E-05	468.76412143232125	72.039	1.4553	72.049	71.69	73.145	0.0097733					100	36	4	0	0	0	0.2917	5	8669	8656;8669;8680;8692;8704		115.46	16.26	1	9910600			33325	1820	22920	22966	38306;38307;38308;38309;38310	38307					0.0446880117353885
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.7640380859375	2	468.764789	935.515025	0.48701	0.0002283	-0.44388	-0.00020808	0.04313	2.0218E-05	468.76441512878176	72.154	0.9575	71.892	71.598	72.556	-0.26199					44	22	4	0	0	0	0.68164	1	8451	8451		68.787	5.4806	1	1313700			33326	1820	22920	22966	38311	38311					0.0446880117353885
KMGLIFEV	8	Unmodified	_KMGLIFEV_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.7644958496094	2	468.764789	935.515025	-0.37163	-0.00017421	1.366	0.00064032	0.99435	0.00046612	468.7648333862482	72.047	0.98396	71.841	71.42	72.404	-0.20613					61	23	4	0	0	0	0.6536	2	8418	8418;8430		71.296	5.4925	1	1189000			33327	1820	22920	22966	38312;38313	38312					0.0446880117353885
KMGLIFEV	8	Oxidation (M)	_KM(Oxidation (M))GLIFEV_		KM(1)GLIFEV		KM(120)GLIFEV	0	0	1		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7623596191406	2	476.762246	951.50994	0.18973	9.0456E-05	-0.042871	-2.0439E-05	0.14686	7.0017E-05	476.7620701585215	64.209	1.8639	63.957	63.553	65.417	-0.2514					140	50	5	0	0	0	0.2822	1	7507	7507		119.56	13.142	1	18540000			33328	1820	22920	22967	38314	38314		66			0.03224497310930019
KMGLIFEV	8	Oxidation (M)	_KM(Oxidation (M))GLIFEV_		KM(1)GLIFEV		KM(100)GLIFEV	0	0	1		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.761962890625	2	476.762246	951.50994	1.5106	0.00072018	-1.4551	-0.00069375	0.055441	2.6432E-05	476.7614084089925	63.947	1.984	63.992	63.583	65.567	0.045502					151	54	5	0	0	0	0.35998	2	7447	7422;7447		102.77	20.468	1	21920000			33329	1820	22920	22967	38315;38316	38316		66			0.03224497310930019
KMHFLLID	8	Unmodified	_KMHFLLID_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7687072753906	2	508.783513	1015.55247	0.0043209	2.1984E-06	-4.452	-0.0022651	-4.4477	-0.0022629	508.7814085831523	41.887	0.8271	41.887	41.36	42.187	0					47	23	3	0	0	0	0.027866	1	3791	3791		31.955	1.4512	1	1751600	+		33330	24137	22921	22968	38317	38317					0.04531892439172225
KMHTCLPPSL	10	Unmodified	_KMHTCLPPSL_					0	0	0			REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF	REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.7932739257812	2	563.791012	1125.56747	0.021457	1.2097E-05	0.24274	0.00013686	0.2642	0.00014895	563.79206375102	55.151	1.1327	55.151	54.689	55.822	0					156	31	7	0	0	0	0.66532	1	6095	6095		69.628	0.8408	1	7907400	+		33331	34656	22922	22969	38318	38318					0.009710162448527626
KMHYGKLKSI	10	Unmodified	_KMHYGKLKSI_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5511474609375	3	402.233876	1203.6798	1.2139	0.00048825	2.4814	0.0009981	3.6953	0.0014864	402.2347020714671	23.24	0.40472	23.048	22.804	23.209	-0.19117					18	8	3	0	0	0	0.03519	1	885	885		21.78	0.74819	1	145460	+		33332	26379	22923	22970	38319	38319					0.08610613313339854
KMHYGKLKSI	10	Unmodified	_KMHYGKLKSI_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	402.233876	1203.6798	0.86072	0.00034621	2.9434	0.0011839	3.8041	0.0015301	402.2350294995584	23.102	0.48792	23.102	22.757	23.245	0	0.060681	0.00020232	NaN	21.78	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81762	+		33333	26379	22923	22970							0.08610613313339854
KMHYGKLKSI	10	Unmodified	_KMHYGKLKSI_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	402.233876	1203.6798	0.16487	6.6317E-05	3.8251	0.0015386	3.99	0.0016049	402.235421120499	23.093	0.43714	23.032	22.753	23.19	-0.060862	-0.0096745	0.0012664	NaN	21.78	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67826	+		33334	26379	22923	22970							0.08610613313339854
KMHYGKLKSI	10	Unmodified	_KMHYGKLKSI_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	402.233876	1203.6798	1.7979	0.00072318	2.2472	0.00090391	4.0451	0.0016271	402.2348404299382	22.973	0.44745	23.047	22.745	23.193	0.073954	0.0050291	-0.00063772	NaN	21.78	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72321	+		33335	26379	22923	22970							0.08610613313339854
KMHYGKLKSI	10	Unmodified	_KMHYGKLKSI_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	402.233876	1203.6798	0.9131	0.00036728	2.2977	0.00092419	3.2108	0.0012915	402.23469552522084	23.133	0.42018	22.931	22.687	23.107	-0.20193	-0.1107	-0.00057687	NaN	21.78	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127180	+		33336	26379	22923	22970							0.08610613313339854
KMHYGKLKSI	10	Unmodified	_KMHYGKLKSI_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	402.233876	1203.6798	0.63702	0.00025623	3.2124	0.0012922	3.8495	0.0015484	402.2351763141128	23.27	0.27415	23.09	22.883	23.157	-0.17989	0.047955	0.00052701	NaN	21.78	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190980	+		33337	26379	22923	22970							0.08610613313339854
KMIKEQIE	8	Unmodified	_KMIKEQIE_					0	0	0		ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.78216552734375	2	509.78371	1017.55287	-0.29326	-0.0001495	-4.0816	-0.0020807	-4.3749	-0.0022302	509.78150420247385	43.868	0.68097	43.899	43.522	44.203	0.030827					56	18	4	0	0	0	0.38989	1	4086	4086		98.629	2.8142	1	4817600			33338	7533	22924	22971	38320	38320					0.04479267368355977
KMKAKLLKM	9	Unmodified	_KMKAKLLKM_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2577514648438	2	545.84559	1089.67663	-0.19091	-0.00010421	2.1834	0.0011918	1.9925	0.0010876	545.8466494223751	59.596	0.36546	59.348	59.13	59.495	-0.24842					16	8	3	0	0	0	0.024294	1	6591	6591		55.504	2.1528	1	75894	+		33339	26696	22925	22972	38321	38321					0.13537646934992154
KMKHLHSVS	9	Unmodified	_KMKHLHSVS_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3181762695312	2	533.794943	1065.57533	-0.36862	-0.00019677	-4.0813	-0.0021786	-4.4499	-0.0023754	533.7922747402276	33.567	0.44023	33.336	33.114	33.554	-0.23107					20	10	3	0	0	0	0.024263	1	2425	2425		71.296	21.271	1	150560	+		33340	23649	22926	22973	38322	38322					0.04516911556629566
KMKKKKKL	8	Unmodified	_KMKKKKKL_					0	0	0		ENST00000368346.7_1_1:155305486-155305633:-|nuORF	ENST00000368346.7_1_1:155305486-155305633:-|nuORF	ENST00000368346.7_1_1:155305486-155305633:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2997436523438	2	516.359722	1030.70489	-0.31591	-0.00016312	1.4913	0.00077007	1.1754	0.00060695	516.3604862018739	103.98	0.12286	103.85	103.79	103.91	-0.12927					4	2	2	0	0	0	0.027866	1	12948	12948		1.4648	0	1	20065			33341	12887	22927	22974	38323	38323					0.19076712906576176
KMKLTTELL	9	Unmodified	_KMKLTTELL_					0	0	0			REV__nc|ENSG00000198848|P23141-3|CES1;REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__nc|ENSG00000198848|P23141-3|CES1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.2958374023438	2	538.822835	1075.63112	-0.1957	-0.00010545	-4.1405	-0.002231	-4.3362	-0.0023365	538.8204680416941	87.398	0.50396	87.363	87.11	87.614	-0.035355					16	11	2	0	0	0	0.023239	1	10978	10978		84.916	5.4645	1	79864	+		33342	28498;32182	22928	22975	38324	38324					0.09632699953590418
KMKTADHFW	9	Unmodified	_KMKTADHFW_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.2689819335938	2	582.286951	1162.55935	-0.19301	-0.00011239	0.064165	3.7362E-05	-0.12885	-7.5025E-05	582.2869659314899	63.772	0.17544	63.514	63.425	63.601	-0.25824					5	4	2	0	0	0	0.02435	1	7216	7216		42.396	0	1	48687			33343	15010	22929	22976	38325	38325					-0.015427946802901715
KMKTIPLSNV	10	Unmodified	_KMKTIPLSNV_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF	ENSG00000163867|ENST00000357182|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8356323242188	2	565.833734	1129.65292	0.39662	0.00022442	2.5389	0.0014366	2.9355	0.001661	565.8351814446705	21.761	0.95173	21.584	21.162	22.113	-0.17721					54	19	5	0	0	0	1.0236	1	700	700		42.864	2.2917	1	1719400			33344	7160	22930	22977	38326	38326					0.09327504702173428
KMLDESFQW	9	Unmodified	_KMLDESFQW_					0	0	0		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.275634765625	2	592.276249	1182.53795	-0.48452	-0.00028697	0.47666	0.00028231	-0.0078604	-4.6556E-06	592.2764527620253	68.342	0.65214	68.08	67.856	68.508	-0.26105					37	15	3	0	0	0	0.056725	1	7896	7896		126.24	32.645	1	1134500			33345	4387	22931	22978	38327	38327					-0.0460222449964931
KMLDESFQW	9	Unmodified	_KMLDESFQW_					0	0	0		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.2764282226562	2	592.276249	1182.53795	-0.081476	-4.8256E-05	1.8529	0.0010974	1.7714	0.0010492	592.2760950215188	68.335	0.88269	68.104	67.637	68.52	-0.23048					62	21	5	0	0	0	0.014738	1	7898	7898		163.15	61.898	1	1174600			33346	4387	22931	22978	38328	38328					-0.0460222449964931
KMLDESFQW	9	Unmodified	_KMLDESFQW_					0	0	0		ENST00000461777.1_1_X:14891644-14911041:+|nuORF;ENSG00000130150|ENST00000380492|MOSPD2	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	ENST00000461777.1_1_X:14891644-14911041:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.276249	1182.53795	-0.33976	-0.00020123	1.8402	0.0010899	1.5004	0.00088864	592.2763823056205	68.314	0.88194	68.081	67.636	68.518	-0.23376	-0.007836	0.0014953	NaN	163.15	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1153400			33347	4387	22931	22978							-0.0460222449964931
KMLEAYNLT	9	Unmodified	_KMLEAYNLT_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7759399414062	2	541.781167	1081.54778	-0.41356	-0.00022406	1.8844	0.0010209	1.4708	0.00079686	541.7826217657637	68.448	0.62115	68.155	67.705	68.326	-0.29267					21	15	2	0	0	0	0.023842	1	8125	8125		77.318	18.536	1	84436			33348	3147	22932	22979	38329	38329					0.010269635057284177
KMLEAYNLT	9	Unmodified	_KMLEAYNLT_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	541.781167	1081.54778	-0.36824	-0.00019951	0.5756	0.00031185	0.20735	0.00011234	541.7816377340974	68.018	0.46371	68.018	67.831	68.295	0	-0.12519	-0.00053368	NaN	77.318	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89297			33349	3147	22932	22979							0.010269635057284177
KMLEAYNLT	9	Unmodified	_KMLEAYNLT_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	541.781167	1081.54778	-0.36196	-0.00019611	1.0696	0.0005795	0.70765	0.00038339	541.7816249197552	68.238	0.4241	68.257	67.967	68.391	0.018913	0.11317	1.6215E-06	NaN	77.318	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157880			33350	3147	22932	22979							0.010269635057284177
KMLEECCH	8	Unmodified	_KMLEECCH_					0	0	0			REV__ENSG00000182010|ENST00000373789|RTKN2	REV__ENSG00000182010|ENST00000373789|RTKN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2740478515625	2	496.703548	991.392543	-0.16736	-8.3127E-05	-0.26828	-0.00013325	-0.43563	-0.00021638	496.7031717540516	40.176	0.62567	40.064	39.792	40.418	-0.11222					26	16	2	0	0	0	0.027866	1	3490	3490		42.474	0	1	246850	+		33351	27443	22933	22980	38330	38330					-0.10349726891843147
KMLEEEVLN	9	Unmodified	_KMLEEEVLN_					0	0	0		ENSG00000180071|ENST00000399703|ANKRD18A;ENST00000354752.5_1_9:99922575-99942308:-|nuORF	ENSG00000180071|ENST00000399703|ANKRD18A	ENSG00000180071|ENST00000399703|ANKRD18A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.7935791015625	2	552.783907	1103.55326	1.0872	0.00060099	-0.13325	-7.3661E-05	0.95395	0.00052733	552.7836391017922	98.647	0.74226	98.523	98.329	99.071	-0.12413					33	17	3	0	0	0	0.4752	1	12239	12239		60.972	0	1	177620			33352	8958	22934	22981	38331	38331					0.005626422975637979
KMLEELMWS	9	Unmodified	_KMLEELMWS_					0	0	0			REV__ENST00000601614.6_1_19:18536721-18536829:+|nuORF	REV__ENST00000601614.6_1_19:18536721-18536829:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.8125610351562	2	583.782853	1165.55115	-0.94671	-0.00055267	2.1625	0.0012625	1.2158	0.00070978	583.7826771396107	17.497	0.19861	17.29	17.166	17.364	-0.20669					5	3	2	0	0	0	0.024541	1	187	187		29.15	2.4566	1	16081	+		33353	35861	22935	22982	38332	38332					-0.025001097119002225
KMLEELMWS	9	Unmodified	_KMLEELMWS_					0	0	0			REV__ENST00000601614.6_1_19:18536721-18536829:+|nuORF	REV__ENST00000601614.6_1_19:18536721-18536829:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	583.782853	1165.55115	-0.48905	-0.0002855	-0.040629	-2.3718E-05	-0.52968	-0.00030922	583.7828577172794	17.425	0.1843	17.283	17.183	17.368	-0.14278	-0.0037193	-0.00059525	NaN	29.15	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7489	+		33354	35861	22935	22982							-0.025001097119002225
KMLGLKVAH	9	Unmodified	_KMLGLKVAH_					0	0	0			REV__CON__Q2KIU3	REV__CON__Q2KIU3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.80364990234375	2	498.80478	995.595007	-0.032016	-1.5969E-05	-2.6154	-0.0013046	-2.6474	-0.0013206	498.80335500721344	52.799	1.1628	52.891	52.674	53.836	0.091938					99	31	4	0	0	0	0.90698	1	5640	5640		31.955	5.1588	1	12396000	+	+	33355	19576	22936	22983	38333	38333					0.09703287567378993
KMLIERPH	8	Unmodified	_KMLIERPH_					0	0	0			REV__ENST00000527245.5_1_11:124746819-124746948:+|nuORF	REV__ENST00000527245.5_1_11:124746819-124746948:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.293212890625	2	512.292037	1022.56952	0.71301	0.00036527	3.1683	0.0016231	3.8813	0.0019883	512.2934707485983	20.469	0.98444	20.538	20.267	21.251	0.068901					33	19	3	0	0	0	0.87148	1	506	506		53.351	16.192	1	267880	+		33356	34472	22937	22984	38334	38334					0.059138130449582604
KMLKMSKG	8	Unmodified	_KMLKMSKG_					0	0	0		ENSG00000205856|ENST00000382097|C22orf42	ENSG00000205856|ENST00000382097|C22orf42	ENSG00000205856|ENST00000382097|C22orf42	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7644348144531	2	461.764266	921.513979	-0.023003	-1.0622E-05	0.71195	0.00032875	0.68895	0.00031813	461.7644572945982	21.637	1.2574	21.708	21.057	22.314	0.071487					50	25	3	0	0	0	0.99042	1	637	637		38.806	0	1	681210			33357	10450	22938	22985	38335	38335					0.050082635329886216
KMLKNLKEGG	10	Unmodified	_KMLKNLKEGG_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000537634.1_1_12:6700611-6701611:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MSMS	OPSCC_39_ClassI_Rep-2	2	559.3214721679688	2	559.323534	1116.63251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.765	1	67.477	66.977	67.977	-0.28834								0	0	0	0.7491	1	8066	8066		42.396	1.618	1				33358	3129	22939	22986	38336	38336					0.07886334042336784
KMLMMAPHY	9	Unmodified	_KMLMMAPHY_					0	0	0		ENST00000512982.2_1_5:39126184-39127873:-|nuORF	ENST00000512982.2_1_5:39126184-39127873:-|nuORF	ENST00000512982.2_1_5:39126184-39127873:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7940063476562	2	561.268858	1120.52316	-0.37408	-0.00020996	1.7974	0.0010088	1.4233	0.00079885	561.2702877713866	52.331	0.35114	52.147	51.963	52.314	-0.18404					12	8	2	0	0	0	0.024386	1	5447	5447		33.516	0	1	85574			33359	15864	22940	22987	38337	38337					-0.03227711173008174
KMLNQFAPV	9	Unmodified	_KMLNQFAPV_					0	0	0			REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	REV__PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.786865234375	2	524.28642	1046.55829	2.8355	0.0014866	1.2463	0.00065344	4.0819	0.0021401	524.2869469753704	16.447	0.28735	16.447	16.261	16.548	0					16	10	2	0	0	0	0.024541	1	64	64		23.042	7.4007	1	43511	+		33360	21539	22941	22988	38338	38338					0.03686990950814106
KMLTEELTI	9	Unmodified	_KMLTEELTI_					0	0	0		ENST00000545932.5_1_12:108957952-108958021:+|nuORF	ENST00000545932.5_1_12:108957952-108958021:+|nuORF	ENST00000545932.5_1_12:108957952-108958021:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7967529296875	2	539.29665	1076.57875	-1.3016	-0.00070195	1.5867	0.00085572	0.28512	0.00015377	539.2973086792285	65.757	1.0569	65.543	65.175	66.232	-0.21327					63	25	4	0	0	0	0.6504	1	7502	7502		49.442	7.0454	1	2680900			33361	16502	22942	22989	38339	38339					0.04352116819973162
KMLTEELTI	9	Unmodified	_KMLTEELTI_					0	0	0		ENST00000545932.5_1_12:108957952-108958021:+|nuORF	ENST00000545932.5_1_12:108957952-108958021:+|nuORF	ENST00000545932.5_1_12:108957952-108958021:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.796875	2	539.29665	1076.57875	-1.3268	-0.00071556	1.7365	0.00093652	0.40972	0.00022096	539.2972620860268	65.772	1.1605	65.521	65.148	66.309	-0.25112					75	28	4	0	0	0	0.4752	1	7494	7494		60.972	11.53	1	2257000			33362	16502	22942	22989	38340	38340					0.04352116819973162
KMLVNFLGK	9	Unmodified	_KMLVNFLGK_					0	0	0		OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant;ENSG00000196341|ENST00000641015|OR8D1	OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2883911132812	2	525.312438	1048.61032	-1.0766	-0.00056554	-2.2115	-0.0011617	-3.288	-0.0017272	525.3108240800073	82.957	0.68777	82.957	82.535	83.223	0					26	15	2	0	0	0	0.024539	1	10319	10319		14.865	4.5996	1	127410			33363	9852	22943	22990	38341	38341					0.08796154364586073
KMLYRVKVN	9	Unmodified	_KMLYRVKVN_					0	0	0			REV__ENST00000487196.1_1_10:5800911-5803598:+|nuORF	REV__ENST00000487196.1_1_10:5800911-5803598:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8427124023438	2	575.841894	1149.66923	-0.77613	-0.00044693	2.6848	0.001546	1.9087	0.0010991	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	0.70186	1	11353	11353		45.952	10.8	1	6382400	+		33364	33606	22944	22991	38342	38342					0.10038630658937109
KMMDVTVTI	9	Oxidation (M)	_KMM(Oxidation (M))DVTVTI_		KM(0.015)M(0.985)DVTVTI		KM(-18)M(18)DVTVTI	0	0	1		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.2697143554688	2	527.269578	1052.5246	-1.2395	-0.00065357	1.6931	0.00089271	0.45353	0.00023913	527.2699205073327	54.549	1.3423	54.549	53.976	55.319	0					109	38	5	0	0	0	0.2508	1	5963	5963		82.241	8.2658	2	7796200			33365	2483	22945	22992	38343	38343		96			0.0004420139678131818
KMMIAEFST	9	Unmodified	_KMMIAEFST_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2581176757812	2	529.256471	1056.49839	0.15195	8.0423E-05	3.376	0.0017868	3.528	0.0018672	529.2581132411847	17.089	0.51363	16.946	16.812	17.325	-0.14278					19	12	3	0	0	0	0.83071	1	116	116		37.159	1.5408	1	48091			33366	18349	22946	22993	38344	38344					-0.02760067774693198
KMNESTRSV	9	Unmodified	_KMNESTRSV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4;chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2634887695312	2	526.263673	1050.51279	-1.7245	-0.00090753	1.4664	0.0007717	-0.25811	-0.00013583	526.2643070759718	20.875	0.63522	20.875	20.609	21.244	0					29	12	3	0	0	0	0.37611	1	602	602		67.494	6.5217	1	326670			33367	2593	22947	22994	38345	38345					-0.01044279302209361
KMNESTRSV	9	Oxidation (M)	_KM(Oxidation (M))NESTRSV_		KM(1)NESTRSV		KM(58)NESTRSV	0	0	1		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4;chr8:47970876-47971041|501|10.69|0.24|5.45|+|ENST00000648554|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2611083984375	2	534.26113	1066.50771	-0.0033235	-1.7756E-06	-0.18007	-9.6203E-05	-0.18339	-9.7978E-05	534.2609026909499	17.734	0.44184	17.591	17.407	17.849	-0.14278					19	8	3	0	0	0	0.51687	1	188	188		58.23	8.7884	1	227280			33368	2593	22947	22995	38346	38346		99			-0.02288583164818192
KMPEINAKV	9	Unmodified	_KMPEINAKV_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2919311523438	2	515.291702	1028.56885	-0.023386	-1.205E-05	-0.386	-0.0001989	-0.40938	-0.00021095	515.2913387476041	40.044	0.82095	40.044	39.627	40.448	0					53	22	3	0	0	0	0.11727	1	3495	3495		106.68	29.909	1	2073900			33369	1144	22948	22996	38347	38347					0.05570973605267682
KMPEINAKV	9	Unmodified	_KMPEINAKV_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2918701171875	2	515.291702	1028.56885	-0.32891	-0.00016949	0.092676	4.7755E-05	-0.23624	-0.00012173	515.2915611201685	40.188	0.74268	40.076	39.64	40.382	-0.11223					52	19	4	0	0	0	0.071379	1	3502	3502		120.87	30.092	1	2460500			33370	1144	22948	22996	38348	38348					0.05570973605267682
KMPEINAKV	9	Unmodified	_KMPEINAKV_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2924194335938	2	515.291702	1028.56885	-1.2112	-0.00062414	2.1921	0.0011296	0.98086	0.00050543	515.2930253946771	40.308	1.1739	40.331	39.455	40.629	0.023006					58	32	3	0	0	0	0.15388	1	3479	3479		98.582	19.131	1	2268600			33371	1144	22948	22996	38349	38349					0.05570973605267682
KMPKATGF	8	Unmodified	_KMPKATGF_					0	0	0		ENST00000321250.12_1_8:29964894-29965068:+|nuORF	ENST00000321250.12_1_8:29964894-29965068:+|nuORF	ENST00000321250.12_1_8:29964894-29965068:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2524719238281	2	440.241481	878.468409	0.32729	0.00014409	-1.0875	-0.00047877	-0.76023	-0.00033468	440.24036849882947	90.065	0.86168	90.049	89.583	90.445	-0.016716					51	20	3	0	0	0	0.027866	1	11340	11340		37.028	22.364	1	505880			33372	12204	22949	22997	38350	38350					0.02431361342269156
KMQDKKEAD	9	Unmodified	_KMQDKKEAD_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7722778320312	2	546.771331	1091.52811	-0.045758	-2.5019E-05	0.63266	0.00034592	0.5869	0.0003209	546.771476944906	81.142	0.90481	80.904	80.608	81.513	-0.23783					57	21	5	0	0	0	0.16539	2	9740	9731;9740		96.034	0.23104	1	1638400	+		33373	27144	22950	22998	38351;38352	38352					-0.013994125050203365
KMQDKKEAD	9	Unmodified	_KMQDKKEAD_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.7727661132812	2	546.771331	1091.52811	0.13692	7.4865E-05	0.20817	0.00011382	0.34509	0.00018869	546.771275974475	81.095	1.4104	80.888	80.548	81.958	-0.20632					74	33	4	0	0	0	0.17845	1	9739	9739		93.143	5.4468	1	1744800	+		33374	27144	22950	22998	38353	38353					-0.013994125050203365
KMQDKKEAD	9	Unmodified	_KMQDKKEAD_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7728881835938	2	546.771331	1091.52811	-0.63558	-0.00034752	1.3766	0.00075266	0.74097	0.00040514	546.7718597416558	81.044	0.82352	80.902	80.576	81.399	-0.14248					53	19	4	0	0	0	0.18994	1	9717	9717		90.601	0.23104	1	1520500	+		33375	27144	22950	22998	38354	38354					-0.013994125050203365
KMQTKPNAN	9	Unmodified	_KMQTKPNAN_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2669067382812	2	516.268758	1030.52296	-0.36468	-0.00018827	-3.5336	-0.0018243	-3.8983	-0.0020126	516.2669071432356	31.336	1.8481	31.348	30.334	32.182	0.011799					139	44	5	0	0	0	0.45795	1	2042	2042		62.107	1.8135	1	6582100			33376	7816	22951	22999	38355	38355					0.008923284230149875
KMQVLKGNWAD	11	Oxidation (M)	_KM(Oxidation (M))QVLKGNWAD_		KM(1)QVLKGNWAD		KM(78)QVLKGNWAD	0	0	1		ENST00000608279.1_1_2:133104147-133104555:-|nuORF	ENST00000608279.1_1_2:133104147-133104555:-|nuORF	ENST00000608279.1_1_2:133104147-133104555:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.89080810546875	3	435.892179	1304.65471	-0.079551	-3.4676E-05	-2.5641	-0.0011177	-2.6437	-0.0011524	435.8910472316007	65.217	1.2589	64.966	64.626	65.885	-0.25112					87	30	4	0	0	0	0.48167	1	7428	7428		77.533	6.7171	1	4936400			33377	17588	22952	23000	38356	38356		556			0.014565137201088874
KMRRRQKDQRK	11	Unmodified	_KMRRRQKDQRK_					0	0	0		WNT16|p.E271Q|1|0.19|ENSG00000002745|chr7:121339058-121339058|G/C|missense_variant	WNT16|p.E271Q|1|0.19|ENSG00000002745|chr7:121339058-121339058|G/C|missense_variant	WNT16|p.E271Q|1|0.19|ENSG00000002745|chr7:121339058-121339058|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.9684143066406	3	510.635437	1528.88448	0.040541	2.0702E-05	-2.5039	-0.0012786	-2.4634	-0.0012579	510.63400900848177	101.96	1.5186	101.83	100.98	102.5	-0.12666					101	36	4	0	0	0	1.0921	1	12717	12717		13.508	2.0533	1	138840			33378	38156	22953	23001	38357	38357					0.1411936517642971
KMRSVVADHWK	11	Oxidation (M)	_KM(Oxidation (M))RSVVADHWK_		KM(1)RSVVADHWK		KM(52)RSVVADHWK	0	0	1		ENST00000597173.5_1_2:145780789-145909247:+|nuORF	ENST00000597173.5_1_2:145780789-145909247:+|nuORF	ENST00000597173.5_1_2:145780789-145909247:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.2447204589844	3	458.243323	1371.70814	-0.51219	-0.00023471	3.3869	0.001552	2.8747	0.0013173	458.2440639788778	26.919	1.7049	26.677	25.587	27.292	-0.24217					79	43	4	0	0	0	0.89117	2	1435	1435;1458		52.167	11.866	1	2630900			33379	17442	22954	23002	38358;38359	38358		554			0.037153112226178564
KMTHCESHI	9	Unmodified	_KMTHCESHI_					0	0	0		ENSG00000076321|ENST00000209884|KLHL20;nc|ENSG00000076321|Q9Y2M5-2|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.243896484375	2	543.246969	1084.47938	-0.01577	-8.5669E-06	-1.0413	-0.00056566	-1.057	-0.00057423	543.2444413470183	67.132	3.6672	66.884	66.511	70.178	-0.24839					172	93	3	0	0	0	0.80003	1	7812	7812		39.253	1.4413	1	2240700			33380	1581	22955	23003	38360	38360					-0.059476043457607375
KMTMMAHQY	9	3 Oxidation (M)	_KM(Oxidation (M))TM(Oxidation (M))M(Oxidation (M))AHQY_		KM(1)TM(1)M(1)AHQY		KM(66)TM(66)M(66)AHQY	0	0	3		nc|ENSG00000169435|Q6ZTQ3|RASSF6	nc|ENSG00000169435|Q6ZTQ3|RASSF6	nc|ENSG00000169435|Q6ZTQ3|RASSF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.7445678710938	2	594.745944	1187.47734	-0.53636	-0.00031899	-3.0505	-0.0018143	-3.5868	-0.0021333	594.7441637827194	30.323	1.1304	30.173	29.879	31.009	-0.14952					67	26	4	0	0	0	0.39228	1	1913	1913		66.429	9.9955	1	2545300			33381	18501	22956	23004	38361	38361		583;584;585			-0.10890401145866235
KMVALLIEY	9	Unmodified	_KMVALLIEY_					0	0	0		nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2974853515625	2	540.312103	1078.60965	-1.31	-0.0007078	-1.5817	-0.00085463	-2.8917	-0.0015624	540.3111257185122	77.062	0.65639	76.9	76.402	77.059	-0.16196					22	15	2	0	0	0	0.024381	1	9170	9170		45.952	0	1	398640			33382	7256	22957	23005	38362	38362					0.07349314924863393
KMVEELYRTS	10	Unmodified	_KMVEELYRTS_					0	0	0			REV__ENSG00000013375|ENST00000513973|PGM3	REV__ENSG00000013375|ENST00000513973|PGM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.2510070800781	3	419.216551	1254.62782	-0.62343	-0.00026135	-1.93	-0.00080909	-2.5534	-0.0010704	419.2156767904638	25.757	1.0553	25.53	24.797	25.852	-0.22683					46	24	3	0	0	0	0.03519	1	1286	1286		14.086	0	1	241620	+		33383	19956	22958	23006	38363	38363					0.01069405108933097
KMVKKVCPCN	10	Unmodified	_KMVKKVCPCN_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.8236694335938	2	575.30069	1148.58683	-1.97	-0.0011334	-3.4336	-0.0019753	-5.4036	-0.0031087	575.2985406757246	43.929	0.75883	43.929	43.658	44.417	0					54	21	4	0	0	0	0.03519	1	4197	4197		47.657	19.775	1	3506200			33384	18053	22959	23007	38364	38364					0.01847649264118445
KMVYSEELL	9	Unmodified	_KMVYSEELL_					0	0	0			REV__ENST00000474256.1_1_22:46640991-46646169:-|nuORF	REV__ENST00000474256.1_1_22:46640991-46646169:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.2894287109375	2	556.288825	1110.5631	-0.28254	-0.00015718	2.0208	0.0011241	1.7382	0.00096696	556.2888474042767	67.657	2.7348	67.369	66.581	69.316	-0.28834					168	69	4	0	0	0	0.35646	1	8083	8083		68.787	5.253	1	3080900	+		33385	28684	22960	23008	38365	38365					0.01223830302933493
KNAEETLNI	9	Unmodified	_KNAEETLNI_					0	0	0		ENSG00000184999|ENST00000332793|SLC22A10;nc|ENSG00000184999|Q63ZE4-2|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2706909179688	2	516.272021	1030.52949	-0.44993	-0.00023229	-3.1568	-0.0016298	-3.6068	-0.0018621	516.2706563454648	51.258	1.4526	51.109	50.256	51.709	-0.14916					92	41	4	0	0	0	0.35646	1	5423	5423		68.787	0	1	7150600			33386	9393	22961	23009	38366	38366					0.015445448553691676
KNAEKLKVK	9	Unmodified	_KNAEKLKVK_					0	0	0		ENST00000507292.1_1_6:35824956-35836900:-|nuORF;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1	ENST00000507292.1_1_6:35824956-35836900:-|nuORF	ENST00000507292.1_1_6:35824956-35836900:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2888793945312	2	529.340041	1056.66553	0.28488	0.0001508	3.3349	0.0017653	3.6198	0.0019161	529.3415700856441	87.194	1.8888	87.216	85.984	87.873	0.021263					101	44	3	0	0	0	0.024374	1	10789	10789		58.782	12.83	1	199930			33387	2046	22962	23010	38367	38367					0.13946284156691036
KNAFSPRW	8	Unmodified	_KNAFSPRW_					0	0	0		ENSG00000139151|ENST00000266505|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;nc|ENSG00000139151|Q86YW0-2|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2594299316406	2	503.266876	1004.5192	0.32572	0.00016393	1.9221	0.00096732	2.2478	0.0011313	503.26814764896227	23.051	0.28004	22.85	22.64	22.92	-0.20193					9	5	2	0	0	0	0.027866	1	852	852		40.573	7.7602	1	56544			33388	5303	22963	23011	38368	38368					0.017120267114592025
KNAFSPRW	8	Unmodified	_KNAFSPRW_					0	0	0		ENSG00000139151|ENST00000266505|PLCZ1;nc|ENSG00000139151|Q86YW0-3|PLCZ1;nc|ENSG00000139151|Q86YW0-2|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.266876	1004.5192	1.0777	0.00054236	1.9337	0.00097316	3.0114	0.0015155	503.2677708709756	23.093	0.36881	22.902	22.711	23.079	-0.19117	0.026357	5.9409E-06	NaN	31.955	19	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103450			33389	5303	22963	23011							0.017120267114592025
KNAIRHNLS	9	Unmodified	_KNAIRHNLS_					0	0	0		nc|ENSG00000290184|Q9BZS1-2|FOXP3;nc|ENSG00000290184|Q9BZS1-4|FOXP3;ENSG00000049768|ENST00000376207|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	nc|ENSG00000290184|Q9BZS1-2|FOXP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.2462158203125	2	526.801614	1051.58868	-1.0106	-0.0005324	2.4223	0.0012761	1.4117	0.00074369	526.8027461115938	38.088	0.40798	37.867	37.613	38.021	-0.22149					27	11	3	0	0	0	0.024541	1	3127	3127		23.042	0	1	401820			33390	1133	22964	23012	38369	38369					0.06494485660209648
KNAKGAKT	8	Unmodified	_KNAKGAKT_					0	0	0		nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.54290771484375	2	409.248152	816.481751	0.64688	0.00026474	-0.16772	-6.8637E-05	0.47917	0.0001961	409.2480381277663	21.805	0.42964	21.628	21.445	21.875	-0.17721					14	8	2	0	0	0	0.027866	1	736	736		29.15	17.639	1	69071			33391	18601	22965	23013	38370	38370					0.06616935445845229
KNAKRKVW	8	Unmodified	_KNAKRKVW_					0	0	0		OR4P4|p.M296K|1|0.32|ENSG00000181927|chr11:55639244-55639244|T/A|missense_variant	OR4P4|p.M296K|1|0.32|ENSG00000181927|chr11:55639244-55639244|T/A|missense_variant	OR4P4|p.M296K|1|0.32|ENSG00000181927|chr11:55639244-55639244|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2666625976562	2	515.319443	1028.62433	-0.86949	-0.00044807	-2.106	-0.0010852	-2.9754	-0.0015333	515.3189912528543	31.479	0.57632	31.479	31.173	31.749	0					21	13	3	0	0	0	0.027866	1	2061	2061		12.207	0	1	62885			33392	18919	22966	23014	38371	38371					0.11116567907879471
KNALELTTP	9	Unmodified	_KNALELTTP_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7503662109375	2	493.779482	985.544411	0.005375	2.654E-06	0.56558	0.00027927	0.57096	0.00028193	493.779356257256	45.559	0.54185	45.559	45.31	45.852	0					32	15	3	0	0	0	0.023007	1	4456	4456		56.721	0	1	1016400	+		33393	22407	22967	23015	38372	38372					0.0510603672336174
KNALRGLR	8	Unmodified	_KNALRGLR_					0	0	0		ENSG00000153902|ENST00000310123|LGI4;ENST00000591840.5_1_19:35615713-35625539:-|nuORF;ENST00000473160.6_1_19:35622134-35624715:-|nuORF;nc|ENSG00000153902|Q8N135-2|LGI4	ENSG00000153902|ENST00000310123|LGI4	ENSG00000153902|ENST00000310123|LGI4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.286865234375	2	464.295968	926.577383	0.10895	5.0586E-05	2.8864	0.0013402	2.9954	0.0013907	464.29755833996666	75.228	0.50124	74.952	74.763	75.264	-0.27573					16	11	2	0	0	0	0.027866	1	8905	8905		25.45	11.675	1	69138			33394	6364	22968	23016	38373	38373					0.11115708356737741
KNALSDHDLY	10	Unmodified	_KNALSDHDLY_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.2896728515625	2	588.288202	1174.56185	-0.13377	-7.8697E-05	3.5251	0.0020738	3.3913	0.0019951	588.2902351011721	85.271	1.4355	85.134	84.789	86.224	-0.13752					88	33	5	0	0	0	0.62431	1	10328	10328		74.255	18.751	1	1667800	+		33395	27033	22969	23017	38374	38374					-0.018446677416250168
KNAMKQLW	8	Unmodified	_KNAMKQLW_					0	0	0		ENSG00000176540|ENST00000319813|OR4C5	ENSG00000176540|ENST00000319813|OR4C5	ENSG00000176540|ENST00000319813|OR4C5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3055114746094	2	509.778762	1017.54297	-0.73658	-0.00037549	2.6361	0.0013438	1.8995	0.00096833	509.779869293321	22.346	0.46248	22.161	21.952	22.415	-0.18539					14	9	2	0	0	0	0.027866	1	766	766		52.299	19.487	1	93275			33396	8646	22970	23018	38375	38375					0.034901241536317684
KNANEKNII	9	Unmodified	_KNANEKNII_					0	0	0		nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.2957763671875	2	522.29583	1042.57711	0.44202	0.00023086	-0.26222	-0.00013695	0.1798	9.391E-05	522.2956448427797	103.85	0.53911	103.68	103.44	103.98	-0.16791					42	12	5	0	0	0	0.85329	1	12904	12904		35.618	0	1	746380			33397	6195	22971	23019	38376	38376					0.057522438462456194
KNANEKNII	9	Unmodified	_KNANEKNII_					0	0	0		nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	522.29583	1042.57711	0.020762	1.0844E-05	0.36755	0.00019197	0.38831	0.00020282	522.295932007683	103.75	0.68213	103.63	103.32	104	-0.12724	-0.032089	0.00019119	NaN	35.618	48	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	854300			33398	6195	22971	23019							0.057522438462456194
KNANKPLL	8	Unmodified	_KNANKPLL_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2685241699219	2	449.279452	896.544351	0.40339	0.00018123	-0.75971	-0.00034132	-0.35632	-0.00016009	449.2790367226322	49.056	1.2204	49.056	48.585	49.805	0					79	33	3	0	0	0	0.027866	1	5059	5059		31.955	2.8053	1	5340100			33399	9168	22972	23020	38377	38377					0.09194081514044683
KNAPKRDLS	9	Unmodified	_KNAPKRDLS_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8246459960938	2	514.795998	1027.57744	-0.99256	-0.00051097	4.1172	0.0021195	3.1246	0.0016085	514.7971720499977	39.595	0.82265	39.496	38.983	39.806	-0.098755					46	22	3	0	0	0	0.024427	1	3417	3417		26.693	1.1189	1	593260			33400	10040	22973	23021	38378	38378					0.06475663566084222
KNCIKKWPIL	10	Unmodified	_KNCIKKWPIL_					0	0	0			REV__ENSG00000188211|ENST00000338965|NCR3LG1	REV__ENSG00000188211|ENST00000338965|NCR3LG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.8984680175781	3	414.917888	1241.73183	0.322	0.00013361	-0.82379	-0.0003418	-0.50178	-0.0002082	414.9172927998247	25	0.21827	25.079	24.914	25.133	0.078697					5	4	2	0	0	0	0.03519	1	1079	1079		27.047	14.841	1	26460	+		33401	28020	22974	23022	38379	38379					0.12063776727086406
KNCLECRY	8	Carbamidomethyl (C)	_KNC(Carbamidomethyl (C))LECRY_	KNC(1)LECRY		KNC(35)LEC(-35)RY		0	1	0			REV__ENST00000505484.5_1_4:121652936-121737791:-|nuORF	REV__ENST00000505484.5_1_4:121652936-121737791:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2442016601562	2	543.246969	1084.47938	-0.01577	-8.5669E-06	-1.0413	-0.00056566	-1.057	-0.00057423	543.2444413470183	67.132	3.6672	66.884	66.511	70.178	-0.24839					172	93	3	0	0	0	0.75307	1	7775	7775		62.978	11.643	2	2240700	+		33402	23891	22975	23023	38380	38380	310				-0.05947604345783475
KNCLELLKD	9	Unmodified	_KNCLELLKD_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3076782226562	2	538.294442	1074.57433	-0.33231	-0.00017888	3.6757	0.0019786	3.3434	0.0017997	538.8004224896955	68.081	0.38701	68.1	68.004	68.391	0.018913					11	9	2	0	0	0	0.023837	1	8097	8097		74.255	20.904	1	147810	+		33403	36956	22976	23024	38381	38381					0.040026523970709604
KNCQNCKYP	9	Unmodified	_KNCQNCKYP_					0	0	0			REV__ENSG00000198131|ENST00000687789|ZNF544	REV__ENSG00000198131|ENST00000687789|ZNF544	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2687377929688	2	549.246969	1096.47938	0.078405	4.3064E-05	-1.351	-0.00074206	-1.2726	-0.00069899	549.2451641856549	56.371	0.715	56.155	55.598	56.313	-0.21607					24	18	2	0	0	0	0.024457	1	6037	6037		37.159	2.9866	1	207650	+		33404	28388	22977	23025	38382	38382					-0.06499604345776788
KNCQNCKYP	9	Unmodified	_KNCQNCKYP_					0	0	0			REV__ENSG00000198131|ENST00000687789|ZNF544	REV__ENSG00000198131|ENST00000687789|ZNF544	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.246969	1096.47938	-0.55865	-0.00030684	3.0231	0.0016604	2.4645	0.0013536	549.2485474605407	56.295	0.67503	56.139	55.933	56.608	-0.15656	0.0052414	0.0004127	NaN	35.618	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173030	+		33405	28388	22977	23025							-0.06499604345776788
KNCQNCKYP	9	Unmodified	_KNCQNCKYP_					0	0	0			REV__ENSG00000198131|ENST00000687789|ZNF544	REV__ENSG00000198131|ENST00000687789|ZNF544	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.246969	1096.47938	-0.5888	-0.0003234	2.9756	0.0016343	2.3868	0.0013109	549.248694386734	56.325	0.47084	56.107	55.921	56.392	-0.21827	-0.02688	0.00036046	NaN	35.618	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197510	+		33406	28388	22977	23025							-0.06499604345776788
KNDDKNILT	9	Unmodified	_KNDDKNILT_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7858276367188	2	530.785296	1059.55604	-0.68752	-0.00036493	0.56333	0.00029901	-0.1242	-6.5921E-05	530.7853996784322	53.253	0.87894	53.349	53.092	53.971	0.095669					76	24	4	0	0	0	0.26966	1	5672	5672		79.713	0	1	4615300			33407	6400	22978	23026	38383	38383					0.02864233746709033
KNDKCLKT	8	Unmodified	_KNDKCLKT_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.2493591308594	2	475.260402	948.506251	0.5921	0.0002814	-2.0503	-0.00097441	-1.4582	-0.000693	475.2593319832898	48.406	2.2723	48.406	47.843	50.116	0					107	64	2	0	0	0	0.027866	1	5097	5097		35.618	7.736	1	931380	+		33408	28787	22979	23027	38384	38384					0.02993827537056859
KNDKCLKT	8	Unmodified	_KNDKCLKT_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.260402	948.506251	0.022302	1.0599E-05	-1.8726	-0.00088996	-1.8503	-0.00087936	475.2593569732711	48.613	1.5078	48.46	47.859	49.366	-0.15276	0.033703	-0.00010764	NaN	35.618	99	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728160	+		33409	28787	22979	23027							0.02993827537056859
KNDKCLKT	8	Unmodified	_KNDKCLKT_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.260402	948.506251	-0.33317	-0.00015834	-1.7855	-0.00084858	-2.1187	-0.0010069	475.25992322764466	48.453	2.1562	48.355	47.451	49.607	-0.097553	-0.071264	-2.4877E-05	NaN	35.618	108	57	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420760	+		33410	28787	22979	23027							0.02993827537056859
KNDKCLKT	8	Unmodified	_KNDKCLKT_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.260402	948.506251	-0.16961	-8.0608E-05	-1.3027	-0.00061913	-1.4723	-0.00069973	475.25960158383936	48.653	1.5889	48.471	47.601	49.19	-0.18206	0.044239	0.00043403	NaN	35.618	70	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413890	+		33411	28787	22979	23027							0.02993827537056859
KNDLPTSL	8	Unmodified	_KNDLPTSL_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.2687072753906	2	444.245275	886.475997	-0.25018	-0.00011114	0.77075	0.0003424	0.52058	0.00023126	444.24556488586217	28.754	0.46331	28.602	28.361	28.824	-0.15134					16	10	2	0	0	0	0.027866	1	1690	1690		73.975	0	1	220640	+		33412	19076	22980	23028	38385	38385					0.028217921435157223
KNDYIISV	8	Unmodified	_KNDYIISV_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2607421875	2	476.260925	950.507297	0.5524	0.00026308	-1.1138	-0.00053045	-0.56139	-0.00026737	476.2600828484481	42.95	0.50787	42.98	42.759	43.267	0.030823					29	13	3	0	0	0	0.027866	1	3974	3974		12.207	5.0135	1	1554100			33413	3308	22981	23029	38386	38386					0.03006365177623138
KNEALIRR	8	Unmodified	_KNEALIRR_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|522|52.63|0.0|22.33|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	500.306532	998.598512	0.70918	0.00035481	1.1223	0.0005615	1.8315	0.0009163	500.30733771935735	86.257	0.81935	86.257	85.956	86.775	0					38	18	3	0	0	0	0.027866	1	10901	10901		47.657	12.039	1	139440			33414	361	22982	23030	38387	38387					0.09915673665602753
KNEARDYVT	9	Unmodified	_KNEARDYVT_					0	0	0			REV__nc|ENSG00000101955|P78539-3|SRPX	REV__nc|ENSG00000101955|P78539-3|SRPX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2891235351562	2	548.275095	1094.53564	-0.68014	-0.0003729	1.7495	0.00095922	1.0694	0.00058631	548.2755955736333	57.222	0.46871	57.054	56.823	57.291	-0.1672					20	12	2	0	0	0	0.024523	1	6236	6236		10.265	3.0719	1	315570	+		33415	21268	22983	23031	38388	38388					-0.007849369131008643
KNECHPERTD	10	Unmodified	_KNECHPERTD_					0	0	0		ENSG00000126231|ENST00000375547|PROZ;nc|ENSG00000126231|P22891-2|PROZ	ENSG00000126231|ENST00000375547|PROZ	ENSG00000126231|ENST00000375547|PROZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5193176269531	3	410.184021	1227.53023	1.1001	0.00045126	-1.3013	-0.00053378	-0.20118	-8.2521E-05	410.18307735872634	24.675	0.41177	24.754	24.547	24.959	0.078344					14	8	2	0	0	0	0.03519	1	1051	1051		19.263	0	1	41466			33416	4186	22984	23032	38389	38389					-0.07442983767214173
KNEEGESQE	9	Unmodified	_KNEEGESQE_					0	0	0			REV__ENST00000222214.9_1_19:13010735-13010780:+|nuORF	REV__ENST00000222214.9_1_19:13010735-13010780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2211303710938	2	525.222725	1048.4309	-0.31655	-0.00016626	-2.8045	-0.001473	-3.1211	-0.0016393	525.2211660620886	28.059	0.71141	27.907	27.689	28.401	-0.15195					47	17	4	0	0	0	0.48817	1	1584	1584		60.118	2.307	1	1167600	+		33417	29352	22985	23033	38390	38390					-0.09138103180316648
KNEFKILLS	9	Unmodified	_KNEFKILLS_					0	0	0			REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3240966796875	2	546.326599	1090.63865	-0.047419	-2.5906E-05	0.22769	0.00012439	0.18027	9.8488E-05	546.326703437478	74.145	1.3739	73.881	73.526	74.9	-0.26479					60	34	2	0	0	0	0.024397	1	8881	8881		31.53	1.2121	1	1175000	+		33418	33234	22986	23034	38391	38391					0.09695175545539314
KNEFKILLS	9	Unmodified	_KNEFKILLS_					0	0	0			REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.326599	1090.63865	0.81203	0.00044363	-0.99869	-0.00054561	-0.18666	-0.00010198	546.3260343101899	73.878	0.80993	73.878	73.741	74.551	0	-0.047093	-0.0010856	NaN	31.53	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329860	+		33419	33234	22986	23034							0.09695175545539314
KNEFKILLS	9	Unmodified	_KNEFKILLS_					0	0	0			REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.326599	1090.63865	-0.35909	-0.00019618	-0.058943	-3.2202E-05	-0.41803	-0.00022838	546.326478770072	74.209	0.71796	73.95	73.817	74.535	-0.25887	0.024556	-5.8778E-05	NaN	31.53	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450290	+		33420	33234	22986	23034							0.09695175545539314
KNEFKILLS	9	Unmodified	_KNEFKILLS_					0	0	0			REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.326599	1090.63865	-1.2683	-0.00069293	1.1117	0.00060732	-0.15669	-8.5603E-05	546.3271839275818	73.928	0.9367	73.938	73.753	74.69	0.0096512	0.012804	0.0012203	NaN	31.53	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414190	+		33421	33234	22986	23034							0.09695175545539314
KNEFKILLS	9	Unmodified	_KNEFKILLS_					0	0	0			REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.326599	1090.63865	-0.1815	-9.9158E-05	0.21041	0.00011495	0.028913	1.5796E-05	546.3266604063732	74.255	1.0055	73.979	73.799	74.804	-0.27573	0.054173	0.00023553	NaN	31.53	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558560	+		33422	33234	22986	23034							0.09695175545539314
KNEIRKLE	8	Unmodified	_KNEIRKLE_					0	0	0		ENSG00000127337|ENST00000247843|YEATS4	ENSG00000127337|ENST00000247843|YEATS4	ENSG00000127337|ENST00000247843|YEATS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2696533203125	2	515.306198	1028.59784	-0.28292	-0.00014579	-0.28537	-0.00014705	-0.56829	-0.00029284	515.3061279587199	50.982	0.56525	50.832	50.626	51.191	-0.14916					31	15	3	0	0	0	0.027866	1	5383	5383		47.916	0	1	769650			33423	4236	22987	23035	38392	38392					0.08468834225891442
KNEKKSLN	8	Unmodified	_KNEKKSLN_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.29205322265625	2	480.777274	959.539994	-0.25684	-0.00012348	0.26052	0.00012525	0.0036825	1.7705E-06	480.77765491059336	31.596	0.44019	31.411	31.208	31.649	-0.18503					16	10	2	0	0	0	0.027866	1	2134	2134		87.754	0	1	140980			33424	1407	22988	23036	38393	38393					0.05860572300480271
KNEKKSLN	8	Unmodified	_KNEKKSLN_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29205322265625	2	480.777274	959.539994	-0.1935	-9.303E-05	-1.7622	-0.0008472	-1.9557	-0.00094023	480.7778959030365	31.612	0.65394	31.459	31.045	31.699	-0.15231					20	16	2	0	0	0	0.027866	1	2116	2116		76.774	0	1	131000			33425	1407	22988	23036	38394	38394					0.05860572300480271
KNEKLKQTT	9	Unmodified	_KNEKLKQTT_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3167724609375	2	545.316763	1088.61897	-0.46982	-0.0002562	0.22064	0.00012032	-0.24919	-0.00013589	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.91321	1	11376	11376		31.53	3.6476	1	12792000			33426	1852	22989	23037	38395	38395					0.07820799534761136
KNEKNVNGSTL	11	Unmodified	_KNEKNVNGSTL_					0	0	0			REV__ENSG00000115548|ENST00000312912|KDM3A	REV__ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.2691040039062	2	602.320034	1202.62551	0.47445	0.00028577	-4.1693	-0.0025113	-3.6949	-0.0022255	602.317331229802	71.049	0.47977	70.834	70.563	71.043	-0.21425					17	10	2	0	0	0	0.024753	1	8263	8263		38.754	0	1	250940	+		33427	22212	22990	23038	38396	38396					0.03230692695478865
KNEKQLQEL	9	Unmodified	_KNEKQLQEL_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.3160400390625	2	565.31422	1128.61389	-0.63743	-0.00036035	-0.91162	-0.00051535	-1.5491	-0.0008757	565.3141364700733	36.544	1.6732	36.544	36.129	37.803	0					141	45	6	0	0	0	0.42604	1	2959	2959		64.207	4.089	1	29221000	+		33428	23762	22991	23039	38397	38397					0.054724956721202034
KNELAALIPLV	11	Unmodified	_KNELAALIPLV_					0	0	0		PIK3R3-ZSWIM5|1|fusion;ENSG00000162415|ENST00000359600|ZSWIM5;ZSWIM5|p.R1079Lfs*7|1|0.07|ENSG00000162415|chr1:45018776-45018777|-/AAACA|frameshift_variant	PIK3R3-ZSWIM5|1|fusion	PIK3R3-ZSWIM5|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.8667602539062	2	590.868631	1179.72271	-0.98145	-0.00057991	-2.8312	-0.0016728	-3.8126	-0.0022528	590.8671327626686	102.25	1.0723	102.25	101.94	103.01	0.0073471					79	25	6	0	0	0	0.99553	2	13059	13038;13059		37.812	0	1	5209500			33429	6941	22992	23040	38398;38399	38399					0.14003706642415636
KNESRELR	8	Unmodified	_KNESRELR_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B;REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3116455078125	2	516.283254	1030.55196	-0.13549	-6.9953E-05	3.8696	0.0019978	3.7341	0.0019278	516.2850111547815	20.29	0.82342	20.123	19.767	20.591	-0.16774					27	16	3	0	0	0	0.027866	1	508	508		47.916	21.223	1	219430	+		33430	28893;30761	22993	23041	38400	38400					0.03790189043661485
KNESRELR	8	Unmodified	_KNESRELR_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B;REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.283254	1030.55196	-0.21698	-0.00011202	7.8932	0.0040751	7.6762	0.0039631	516.2874903242678	19.783	0.38438	19.783	19.644	20.028	0	-0.2455	0.0031602	NaN	47.916	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20822	+		33431	28893;30761	22993	23041							0.03790189043661485
KNETAHKEKE	10	Unmodified	_KNETAHKEKE_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6;REV__ENSG00000006788|ENST00000252172|MYH13;REV__ENSG00000109063|ENST00000583535|MYH3;REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000109061|ENST00000226207|MYH1	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.57196044921875	3	405.210565	1212.60986	0.6466	0.00026201	0.73748	0.00029883	1.3841	0.00056084	405.21097209874563	20.763	0.72836	20.596	20.395	21.123	-0.16774					21	14	2	0	0	0	0.03519	1	595	595		30.569	0	1	13939	+		33432	19848;28330;21776;22814;23337;21775	22994	23042	38401	38401					0.012064061784030855
KNETDEDGW	9	Unmodified	_KNETDEDGW_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.8186645507812	2	547.225268	1092.43598	-0.4581	-0.00025069	4.1969	0.0022966	3.7388	0.002046	547.2273251736327	64.631	0.31539	64.428	64.224	64.539	-0.20254					10	7	2	0	0	0	0.024477	1	7349	7349		27.882	0	1	76459			33433	2844	22995	23043	38402	38402					-0.10653799317719859
KNFHILPCEDD	11	Unmodified	_KNFHILPCEDD_					0	0	0		GRB10|p.Q543H|1|0.36|ENSG00000106070|chr7:50595446-50595446|C/A|missense_variant	GRB10|p.Q543H|1|0.36|ENSG00000106070|chr7:50595446-50595446|C/A|missense_variant	GRB10|p.Q543H|1|0.36|ENSG00000106070|chr7:50595446-50595446|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2669677734375	3	444.208055	1329.60234	-1.2368	-0.00054941	3.7624	0.0016713	2.5255	0.0011219	444.2096878324009	29.777	0.5301	29.777	29.487	30.017	0					16	12	2	0	0	0	0.024779	1	1843	1843		16.53	0	1	93485			33434	17692	22996	23044	38403	38403					-0.049280694134949954
KNFHVLLS	8	Unmodified	_KNFHVLLS_					0	0	0			REV__nc|ENSG00000173947|Q8TCI5-2|CIMAP3	REV__nc|ENSG00000173947|Q8TCI5-2|CIMAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2755126953125	2	479.279452	956.544351	-0.40078	-0.00019209	-3.4674	-0.0016619	-3.8682	-0.001854	479.2757302868624	43.891	0.57786	43.891	43.511	44.089	0					22	15	2	0	0	0	0.027866	1	4150	4150		24.203	0	1	214660	+		33435	33541	22997	23045	38404	38404					0.0643408151404401
KNFLDVDEL	9	Unmodified	_KNFLDVDEL_					0	0	0			REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3240966796875	2	546.782222	1091.54989	-0.024393	-1.3338E-05	-0.57072	-0.00031206	-0.59511	-0.0003254	546.7827667733482	74.567	0.93476	74.304	73.966	74.901	-0.26326					38	21	3	0	0	0	0.024381	1	8881	8881		37.159	0	1	167560	+		33436	23241	22998	23046	38405	38405					0.007777155151870829
KNFLRYID	8	Unmodified	_KNFLRYID_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7994995117188	2	534.795466	1067.57638	-0.59689	-0.00031921	-0.51435	-0.00027507	-1.1112	-0.00059428	535.2972092120546	57.475	0.33951	57.475	57.227	57.567	0					11	8	2	0	0	0	0.027866	1	6448	6448		17.365	0	1	216820			33437	9198	22999	23047	38406	38406					0.045294491971844764
KNFLTTVAIL	10	Unmodified	_KNFLTTVAIL_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3402709960938	2	560.342249	1118.66995	-0.071418	-4.0019E-05	-3.7355	-0.0020932	-3.8069	-0.0021332	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	1.1197	1	12614	12614		20.947	0	1	13448000			33438	9834	23000	23048	38407	38407					0.11535748579603933
KNFPLKTKD	9	Unmodified	_KNFPLKTKD_					0	0	0		ENST00000509232.5_1_4:164057286-164087879:-|nuORF;nc|ENSG00000145414|Q96HR8-2|NAF1;ENSG00000145414|ENST00000274054|NAF1;ENST00000502973.1_1_4:164079476-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7808227539062	2	545.816399	1089.61824	-1.0529	-0.00057467	1.0536	0.00057506	0.00072125	3.9367E-07	545.8167063854465	76.109	0.57507	75.88	75.704	76.279	-0.22843					22	14	2	0	0	0	0.024495	1	9359	9359		26.693	0	1	228320			33439	15801	23001	23049	38408	38408					0.07702004885732094
KNFQIFDME	9	Unmodified	_KNFQIFDME_					0	0	0		NLRP9|p.L635F|1|0.36|ENSG00000185792|chr19:55729920-55729920|T/G|missense_variant	NLRP9|p.L635F|1|0.36|ENSG00000185792|chr19:55729920-55729920|T/G|missense_variant	NLRP9|p.L635F|1|0.36|ENSG00000185792|chr19:55729920-55729920|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.8421630859375	2	586.276249	1170.53795	-0.24711	-0.00014487	-2.5205	-0.0014777	-2.7676	-0.0016226	586.2747578876252	53.284	0.56341	53.157	52.874	53.437	-0.12705					45	14	4	0	0	0	0.024405	1	5556	5556		27.882	11.409	1	1967700			33440	18877	23002	23050	38409	38409					-0.040502244996559966
KNFQIFDME	9	Unmodified	_KNFQIFDME_					0	0	0		NLRP9|p.L635F|1|0.36|ENSG00000185792|chr19:55729920-55729920|T/G|missense_variant	NLRP9|p.L635F|1|0.36|ENSG00000185792|chr19:55729920-55729920|T/G|missense_variant	NLRP9|p.L635F|1|0.36|ENSG00000185792|chr19:55729920-55729920|T/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	586.276249	1170.53795	0.82487	0.0004836	0.3621	0.00021229	1.187	0.00069589	586.2762040339929	52.725	0.4164	52.817	52.486	52.902	0.091942	-0.25072	0.0030119	NaN	27.882	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243510			33441	18877	23002	23050							-0.040502244996559966
KNFRRESV	8	Unmodified	_KNFRRESV_					0	0	0		ENST00000555284.1_1_14:81736911-81745120:-|nuORF;nc|ENSG00000140022|Q8WXE9|STON2;nc|ENSG00000140022|Q8WXE9-3|STON2;ENSG00000140022|ENST00000614646|STON2	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7573852539062	2	518.28834	1034.56213	0.37718	0.00019549	-2.8954	-0.0015007	-2.5182	-0.0013052	518.2873630618192	59.469	1.1434	59.22	58.693	59.836	-0.24842					36	28	2	0	0	0	0.027866	1	6632	6632		29.15	4.9468	1	416330			33442	5387	23003	23051	38410	38410					0.04622796768899207
KNFSSLHTT	9	Unmodified	_KNFSSLHTT_					0	0	0		ENST00000461829.1_1_10:91359007-91371632:-|nuORF;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1	ENST00000461829.1_1_10:91359007-91371632:-|nuORF	ENST00000461829.1_1_10:91359007-91371632:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3164672851562	2	517.766906	1033.51926	-0.16858	-8.7285E-05	4.0472	0.0020955	3.8787	0.0020082	517.7682599282201	21.999	0.38452	21.808	21.516	21.9	-0.19072					9	7	2	0	0	0	0.024397	1	717	717		39.253	13.803	1	14439			33443	6298	23004	23052	38411	38411					0.0038398192079966975
KNFSWIFT	8	Unmodified	_KNFSWIFT_					0	0	0		ENST00000518047.5_1_5:140905691-140905913:-|nuORF	ENST00000518047.5_1_5:140905691-140905913:-|nuORF	ENST00000518047.5_1_5:140905691-140905913:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7718505859375	2	521.77146	1041.52837	-0.3763	-0.00019634	3.5124	0.0018327	3.1361	0.0016363	521.7737222298979	72.514	0.42041	72.315	71.992	72.412	-0.19811					12	9	2	0	0	0	0.027866	1	8499	8499		30.504	0	1	61560			33444	15923	23005	23053	38412	38412					0.009263752771403233
KNFVVVMVTKT	11	Unmodified	_KNFVVVMVTKT_					0	0	0		ENST00000588329.5_1_19:13056723-13059660:+|nuORF;nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A	ENST00000588329.5_1_19:13056723-13059660:+|nuORF	ENST00000588329.5_1_19:13056723-13059660:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3701171875	2	633.367941	1264.72133	1.1238	0.00071176	0.79089	0.00050092	1.9147	0.0012127	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0238	1	12383	12383		31.53	0	1	8250400			33445	8884	23006	23054	38413	38413					0.09955749282016768
KNFVWVEGS	9	Unmodified	_KNFVWVEGS_					0	0	0			REV__RPTOR|p.N161S|1|0.24|ENSG00000141564|chr17:80707974-80707974|A/G|missense_variant	REV__RPTOR|p.N161S|1|0.24|ENSG00000141564|chr17:80707974-80707974|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7972412109375	2	533.271824	1064.5291	-1.0493	-0.00055957	1.0922	0.00058242	0.042847	2.2849E-05	533.2722220770062	55.455	1.2377	55.308	54.947	56.185	-0.14702					75	33	3	0	0	0	0.024405	1	5929	5929		44.117	2.6902	1	3406600	+		33446	37451	23007	23055	38414	38414					-0.0005883007379452465
KNFYFTGQSV	10	Unmodified	_KNFYFTGQSV_					0	0	0		ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	ENSG00000172954|ENST00000379509|LCLAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.7957763671875	2	595.795663	1189.57677	-1.5521	-0.00092471	1.9417	0.0011569	0.38967	0.00023216	595.7967172280273	60.898	0.80122	60.722	60.403	61.205	-0.1761					62	19	4	0	0	0	0.99657	1	6811	6811		46.457	2.34	1	4448700			33447	8326	23008	23056	38415	38415					-0.010431758736331176
KNFYIRKP	8	Unmodified	_KNFYIRKP_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7968139648438	2	533.313826	1064.6131	-0.51818	-0.00027635	-3.3278	-0.0017748	-3.846	-0.0020511	533.3128519105031	55.353	0.81483	55.203	54.782	55.597	-0.15036					34	22	2	0	0	0	0.027866	1	6092	6092		57.811	15.415	1	950570	+		33448	28369	23009	23057	38416	38416					0.08337745813742004
KNFYIRKP	8	Unmodified	_KNFYIRKP_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7980346679688	2	533.313826	1064.6131	-1.0786	-0.00057521	-1.6209	-0.00086443	-2.6994	-0.0014396	533.3133615926856	54.986	0.52468	55.084	54.807	55.332	0.098015					26	14	3	0	0	0	0.027866	1	5976	5976		30.504	0	1	775460	+		33449	28369	23009	23057	38417	38417					0.08337745813742004
KNGAAADII	9	Unmodified	_KNGAAADII_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.G114Efs*9|1|0.22|ENSG00000163359|chr2:237394955-237394955|C/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7554016113281	2	436.745442	871.476331	1.404	0.00061318	-1.0385	-0.00045357	0.36546	0.00015961	436.74485285450896	22.786	0.73756	22.584	22.375	23.113	-0.20199					26	15	2	0	0	0	0.023454	1	833	833		62.107	0	1	82226			33450	7065	23010	23058	38418	38418					0.03545211863365694
KNGAYRINN	9	Unmodified	_KNGAYRINN_					0	0	0			REV__ENSG00000197928|ENST00000598513|ZNF677	REV__ENSG00000197928|ENST00000598513|ZNF677	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2972412109375	2	525.277972	1048.54139	-0.0073098	-3.8397E-06	3.2816	0.0017238	3.2743	0.0017199	525.27947252722	85.99	1.063	85.99	85.584	86.647	0					48	23	3	0	0	0	0.024381	1	10754	10754		29.15	2.4566	1	1432500	+		33451	28364	23011	23059	38419	38419					0.01906206389230647
KNGAYRINN	9	Unmodified	_KNGAYRINN_					0	0	0			REV__ENSG00000197928|ENST00000598513|ZNF677	REV__ENSG00000197928|ENST00000598513|ZNF677	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2972412109375	2	525.277972	1048.54139	-0.35264	-0.00018523	3.4933	0.0018349	3.1406	0.0016497	525.2795701182708	85.97	0.9782	85.925	85.575	86.554	-0.045105					48	22	3	0	0	0	0.024381	1	10713	10713		45.952	11.779	1	1500100	+		33452	28364	23011	23059	38420	38420					0.01906206389230647
KNGDTLYTCAL	11	Unmodified	_KNGDTLYTCAL_					0	0	0		ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	600.295654296875	2	599.792263	1197.56997	-0.78599	-0.00047143	1.8427	0.0011052	1.0567	0.00063379	599.7931881725394	103.38	0.79124	103.37	103.06	103.85	-0.0046005					40	18	3	0	0	0	0.97926	1	13214	13214		41.427	2.1738	1	393330			33453	10284	23012	23060	38421	38421					-0.020908568164941244
KNGEFEVIY	9	Unmodified	_KNGEFEVIY_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	MSMS	OPSCC_40_ClassI_Rep-1	4	549.7787475585938	2	549.776939	1097.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.16	1	102.03	101.53	102.53	-0.12931								0	0	0	0.52604	1	12681	12681		49.442	5.3247	1		+		33454	23423	23013	23061	38422	38422					-0.005542671392504417
KNGGFDSTEA	10	Unmodified	_KNGGFDSTEA_					0	0	0			REV__ENST00000368787.3_1_1:152552054-152552168:-|nuORF	REV__ENST00000368787.3_1_1:152552054-152552168:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8145751953125	2	513.230353	1024.44615	-0.8056	-0.00041346	1.0741	0.00055126	0.2685	0.0001378	513.2307181927875	60.409	0.93232	60.409	59.988	60.921	0					34	24	2	0	0	0	0.03519	1	6879	6879		34.173	0	1	173890	+		33455	31069	23014	23062	38423	38423					-0.06509191592465413
KNGGKPLAL	9	Unmodified	_KNGGKPLAL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26324462890625	2	449.279452	896.544351	-1.507	-0.00067707	1.7312	0.00077781	0.22421	0.00010073	449.28011894516976	60.569	0.89246	60.648	60.318	61.21	0.078888					49	23	3	0	0	0	0.024323	1	6934	6934		35.618	5.7767	1	1372400	+		33456	27006	23015	23063	38424	38424					0.09194081514021946
KNGHEIKV	8	Unmodified	_KNGHEIKV_					0	0	0		ENSG00000169288|ENST00000315567|MRPL1	ENSG00000169288|ENST00000315567|MRPL1	ENSG00000169288|ENST00000315567|MRPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7506408691406	2	462.766709	923.518865	-0.031371	-1.4518E-05	4.4766	0.0020716	4.4453	0.0020571	462.76855610666087	42.459	1.5756	42.327	41.825	43.4	-0.13219					71	44	2	0	0	0	0.027866	1	3895	3895		30.504	11.144	1	286380			33457	7923	23016	23064	38425	38425					0.054046069916125816
KNGILIKQV	9	Unmodified	_KNGILIKQV_					0	0	0			REV__ENST00000267512.9_1_14:65415074-65417765:-|nuORF	REV__ENST00000267512.9_1_14:65415074-65417765:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8267517089844	2	506.829309	1011.64407	-0.08562	-4.3395E-05	-0.01405	-7.1211E-06	-0.09967	-5.0516E-05	506.82915667050565	67.779	0.82965	67.49	67.187	68.017	-0.28834					50	20	4	0	0	0	0.4752	1	8084	8084		60.972	0.85368	1	1928800	+		33458	29771	23017	23065	38426	38426					0.1387089912798274
KNGILLQV	8	Unmodified	_KNGILLQV_					0	0	0			REV__ENST00000561790.1_1_16:46660318-46660894:-|nuORF	REV__ENST00000561790.1_1_16:46660318-46660894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.26641845703125	2	442.781828	883.549102	-0.68018	-0.00030117	1.2583	0.00055713	0.57808	0.00025596	442.7819864705925	60.738	0.48228	60.738	60.401	60.884	0					17	12	2	0	0	0	0.027866	1	6999	6999		23.042	5.6775	1	87066	+		33459	26710	23018	23066	38427	38427					0.10266965656796856
KNGKELVPD	9	Unmodified	_KNGKELVPD_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2879638671875	2	500.277106	998.53966	0.5014	0.00025084	-1.4598	-0.00073033	-0.95844	-0.00047949	500.27626486384605	49.221	0.83927	49.221	49.039	49.878	0					45	22	3	0	0	0	0.024021	1	5057	5057		40.778	0	1	446420			33460	4810	23019	23067	38428	38428					0.04033152580598198
KNGKKACLNP	10	Unmodified	_KNGKKACLNP_					0	0	0		ENST00000511669.1_1_4:74903808-74904099:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENSG00000163734|ENST00000296026|CXCL3	ENST00000511669.1_1_4:74903808-74904099:-|nuORF	ENST00000511669.1_1_4:74903808-74904099:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7807006835938	2	536.800226	1071.5859	-1.3757	-0.00073848	2.365	0.0012695	0.98926	0.00053104	537.3021946844077	35.87	0.49317	35.87	35.57	36.063	0					16	8	3	0	0	0	0.03519	1	2761	2761		26.693	4.1133	1	186020			33461	7137	23020	23068	38429	38429					0.052968942110283024
KNGKLRVL	8	Unmodified	_KNGKLRVL_					0	0	0			REV__ENSG00000173376|ENST00000379692|NDNF	REV__ENSG00000173376|ENST00000379692|NDNF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.90081787109375	2	464.308544	926.602535	0.08388	3.8946E-05	0.22186	0.00010301	0.30574	0.00014196	464.3083399182248	20.372	0.24673	20.204	20.049	20.296	-0.16774					7	4	2	0	0	0	0.027866	1	523	523		20.482	0	1	13180	+		33462	26769	23021	23069	38430	38430					0.13629763159326558
KNGKVTKSY	9	Unmodified	_KNGKVTKSY_					0	0	0		ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7691040039062	2	512.792924	1023.57129	0.061527	3.1551E-05	-1.4471	-0.00074205	-1.3855	-0.0007105	512.7919972791876	33.076	0.40678	33.133	32.838	33.245	0.056572					15	10	2	0	0	0	0.024427	1	2306	2306		51.335	3.4199	1	80005			33463	2726	23022	23070	38431	38431					0.0604514533456495
KNGKVTKSY	9	Unmodified	_KNGKVTKSY_					0	0	0		ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.792924	1023.57129	-0.78387	-0.00040196	-1.507	-0.00077278	-2.2909	-0.0011747	512.7916064044178	33.201	0.3677	33.208	32.888	33.255	0.0066261	-0.018629	-0.00024756	NaN	76.774	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84847			33464	2726	23022	23070							0.0604514533456495
KNGLNVNISL	10	Unmodified	_KNGLNVNISL_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3115234375	2	536.31148	1070.60841	-0.33612	-0.00018026	0.72478	0.00038871	0.38866	0.00020844	536.3118872543531	59.151	1.0621	59.237	58.666	59.728	0.085682					75	25	4	0	0	0	0.62431	1	6674	6674		74.255	2.3776	1	10184000	+		33465	19108	23023	23071	38432	38432					0.07592816880332975
KNGMIIPSM	9	Unmodified	_KNGMIIPSM_					0	0	0		nc|ENSG00000133110|Q15063-8|POSTN;ENSG00000133110|ENST00000379747|POSTN;nc|ENSG00000133110|Q15063-7|POSTN;nc|ENSG00000133110|Q15063-6|POSTN;nc|ENSG00000133110|Q15063-4|POSTN;nc|ENSG00000133110|Q15063-10|POSTN;nc|ENSG00000133110|Q15063-2|POSTN;CON__Q2KJC7;nc|ENSG00000133110|Q15063-3|POSTN;nc|ENSG00000133110|Q15063-9|POSTN;nc|ENSG00000133110|Q15063-5|POSTN	nc|ENSG00000133110|Q15063-8|POSTN	nc|ENSG00000133110|Q15063-8|POSTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7378234863281	2	495.759181	989.503808	-0.47253	-0.00023426	-0.52104	-0.00025831	-0.99357	-0.00049257	495.75915814775584	36.463	0.27205	36.258	36.091	36.363	-0.20518					11	6	2	0	0	0	0.024457	1	2860	2860		21.96	0	1	98048		+	33466	4684	23024	23072	38433	38433					0.008636558077569134
KNGRQWKF	8	Unmodified	_KNGRQWKF_					0	0	0			REV__ENST00000541901.5_1_6:161519319-161529903:+|nuORF	REV__ENST00000541901.5_1_6:161519319-161529903:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.32080078125	2	532.293425	1062.5723	-0.44347	-0.00023606	3.5723	0.0019015	3.1288	0.0016655	532.2949177334607	95.246	0.56426	95.094	94.753	95.317	-0.15186					15	12	2	0	0	0	0.027866	1	11692	11692		35.201	13.241	1	47911	+		33467	20752	23025	23073	38434	38434					0.04351404494127564
KNGRVPFL	8	Unmodified	_KNGRVPFL_					0	0	0			REV__ENSG00000176896|ENST00000696128|TCEANC	REV__ENSG00000176896|ENST00000696128|TCEANC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7776794433594	2	465.779619	929.544686	0.41075	0.00019132	-4.2748	-0.0019911	-3.8641	-0.0017998	465.7776262825221	94.302	0.80025	94.18	93.798	94.598	-0.12215					43	18	3	0	0	0	1.0472	1	11629	11629		29.842	1.5873	1	599230	+		33468	27056	23026	23074	38435	38435					0.07709501233898663
KNGSLNLHTL	10	Unmodified	_KNGSLNLHTL_					0	0	0			REV__ENST00000473205.1_1_9:100746884-100764563:+|nuORF	REV__ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.75830078125	2	548.809105	1095.60366	-0.21333	-0.00011708	3.3104	0.0018168	3.0971	0.0016997	548.8109482653476	68.106	0.53291	68.125	67.93	68.462	0.018921					30	13	3	0	0	0	0.03519	1	8064	8064		45.972	3.108	1	492630	+		33469	23711	23027	23075	38436	38436					0.05967932737553383
KNGTHIRR	8	Unmodified	_KNGTHIRR_					0	0	0			REV__ENSG00000143067|ENST00000421812|ZNF697	REV__ENSG00000143067|ENST00000421812|ZNF697	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.28521728515625	2	491.288674	980.562795	0.26745	0.00013139	-0.31887	-0.00015666	-0.051425	-2.5265E-05	491.289460155108	58.632	0.91125	58.724	58.371	59.283	0.091217					38	24	2	0	0	0	0.027866	1	6539	6539		32.812	3.6629	1	576940	+		33470	24195	23028	23076	38437	38437					0.07173636208608514
KNHGLLPQP	9	Unmodified	_KNHGLLPQP_					0	0	0		nc|ENSG00000167889|Q3V5L5-2|MGAT5B;nc|ENSG00000167889|Q3V5L5-5|MGAT5B;ENSG00000167889|ENST00000569840|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2476501464844	2	502.287808	1002.56106	-0.81011	-0.00040691	-1.8452	-0.00092683	-2.6553	-0.0013337	502.28693880601315	60.799	0.71061	60.871	60.384	61.095	0.071129					24	18	2	0	0	0	0.024381	1	6953	6953		45.952	16.802	1	476730			33471	18483	23029	23077	38438	38438					0.059885823999820786
KNHIHAIAQT	10	Unmodified	_KNHIHAIAQT_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.2858276367188	2	566.814722	1131.61489	-1.1881	-0.00067342	1.5705	0.00089017	0.38239	0.00021675	566.8161537779204	62.842	0.48645	62.602	62.419	62.905	-0.23926					18	11	3	0	0	0	0.03519	1	7328	7328		19.997	0	1	211720	+		33472	22799	23030	23078	38439	38439					0.05434754831662758
KNHNVTTII	9	Unmodified	_KNHNVTTII_					0	0	0		ENSG00000218305|ENST00000650262|CDC14C;nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-5|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B	ENSG00000218305|ENST00000650262|CDC14C	ENSG00000218305|ENST00000650262|CDC14C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2897338867188	2	520.298373	1038.58219	-0.68689	-0.00035739	4.2805	0.0022271	3.5936	0.0018697	520.3004856194592	63.021	0.37064	62.782	62.654	63.025	-0.23926					14	8	2	0	0	0	0.023635	1	7321	7321		76.774	23.423	1	191140			33473	1709	23031	23079	38440	38440					0.06444547708861137
KNHRNILVTI	10	Unmodified	_KNHRNILVTI_					0	0	0		ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	ENST00000360663.9_2_10:75230495-75230888:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.365478515625	2	604.367121	1206.71969	0.12428	7.5109E-05	-0.8283	-0.0005006	-0.70403	-0.00042549	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.1081	1	12922	12922		26.693	13.239	1	4482300			33474	12774	23032	23080	38441	38441					0.12459876308275852
KNHSLDLYE	9	Unmodified	_KNHSLDLYE_					0	0	0			REV__ENSG00000174125|ENST00000308979|TLR1	REV__ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3114013671875	2	559.77747	1117.54039	0.19136	0.00010712	3.9029	0.0021847	4.0942	0.0022919	559.7792838767492	51.34	1.0959	51.34	50.775	51.871	0					38	30	2	0	0	0	0.024319	1	5497	5497		47.657	10.498	1	1882500	+		33475	26834	23033	23081	38442	38442					-0.013680527703400003
KNHTSEHFPF	10	Unmodified	_KNHTSEHFPF_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2403259277344	3	415.2	1242.57817	-0.9301	-0.00038618	-0.94394	-0.00039192	-1.874	-0.0007781	415.19984254373486	30.076	0.33353	30.15	29.962	30.296	0.074314					12	7	2	0	0	0	0.03519	1	1828	1828		16.007	5.9029	1	110130			33476	10376	23034	23082	38443	38443					-0.033415417848800644
KNHVECSVPE	10	Unmodified	_KNHVECSVPE_					0	0	0			REV__nc|ENSG00000183853|Q96J84-3|KIRREL1	REV__nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.791015625	2	571.268955	1140.52336	-0.072254	-4.1276E-05	-2.2844	-0.001305	-2.3566	-0.0013463	571.2675561606776	78.017	0.76179	77.755	77.485	78.247	-0.26202					31	17	3	0	0	0	0.03519	1	9317	9317		5.9211	0	1	377660	+		33477	27617	23035	23083	38444	38444					-0.04128296647786556
KNHYVVPTF	9	Unmodified	_KNHYVVPTF_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.2528686523438	2	552.795466	1103.57638	-0.16144	-8.9245E-05	0.53472	0.00029559	0.37327	0.00020634	552.795299749334	45.968	0.20177	45.968	45.784	45.986	0					6	5	2	0	0	0	0.024436	1	4507	4507		23.042	3.6825	1	120710	+		33478	23084	23036	23084	38445	38445					0.028734491971590614
KNIALWTPL	9	Unmodified	_KNIALWTPL_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2887573242188	2	528.316035	1054.61752	0.12542	6.6262E-05	-4.2026	-0.0022203	-4.0771	-0.002154	528.3136368031678	57.568	0.61162	57.394	57.034	57.646	-0.1749					38	15	3	0	0	0	0.02435	1	6467	6467		19.997	0	1	2997500	+		33479	21931	23037	23085	38446	38446					0.09239210236660256
KNIATGDATL	10	Unmodified	_KNIATGDATL_					0	0	0			REV__ENSG00000140505|ENST00000343932|CYP1A2	REV__ENSG00000140505|ENST00000343932|CYP1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2742004394531	2	502.274564	1002.53457	0.01168	5.8665E-06	-0.043383	-2.179E-05	-0.031703	-1.5924E-05	502.27442072047097	34.853	0.68011	34.637	34.307	34.987	-0.21555					39	16	3	0	0	0	0.21865	1	2603	2603		118.74	8.6232	1	1909300	+		33480	24023	23038	23086	38447	38447					0.033408487179940494
KNIDRFIPI	9	Unmodified	_KNIDRFIPI_					0	0	0		ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.3319091796875	2	558.332216	1114.64988	0.18374	0.00010259	-0.49514	-0.00027645	-0.3114	-0.00017386	558.3318444181673	59.429	0.95211	59.18	58.847	59.8	-0.24841					65	23	4	0	0	0	0.29158	1	6541	6541		76.774	2.5191	1	5001100			33481	7715	23039	23087	38448	38448					0.0971399763966474
KNIELGYFKE	10	Unmodified	_KNIELGYFKE_					0	0	0			REV__ENSG00000262406|ENST00000571244|MMP12	REV__ENSG00000262406|ENST00000571244|MMP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.25872802734375	3	414.223923	1239.64994	-0.80114	-0.00033185	2.3351	0.00096727	1.534	0.00063542	414.2235362421159	38.689	0.63721	38.468	38.085	38.722	-0.22149					46	16	4	0	0	0	0.03519	1	3214	3214		30.569	10.254	1	180480	+		33482	29122	23040	23088	38449	38449					0.03969952848979119
KNIFIGAEP	9	Unmodified	_KNIFIGAEP_					0	0	0			REV__ENSG00000178404|ENST00000322630|CEP295NL	REV__ENSG00000178404|ENST00000322630|CEP295NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2270812988281	2	494.776742	987.538931	-0.94706	-0.00046858	-3.3268	-0.001646	-4.2739	-0.0021146	494.7749701097505	38.073	0.77799	37.99	37.636	38.414	-0.082512					53	21	4	0	0	0	0.024374	1	3189	3189		25.574	0	1	710970	+		33483	27185	23041	23089	38450	38450					0.044663579315511015
KNIIELVH	8	Unmodified	_KNIIELVH_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2868347167969	2	483.292559	964.570566	-0.291	-0.00014064	0.85372	0.0004126	0.56272	0.00027196	483.29229510904224	20.701	0.49621	20.477	20.266	20.762	-0.22344					13	9	2	0	0	0	0.027866	1	529	529		25.45	13.243	1	21064			33484	7356	23042	23090	38451	38451					0.08686350685502475
KNIIELVH	8	Unmodified	_KNIIELVH_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.292559	964.570566	0.9583	0.00046314	-3.7076	-0.0017919	-2.7493	-0.0013287	483.2904162842955	20.31	0.38217	20.115	19.805	20.187	-0.19577	-0.18121	-0.0019807	NaN	25.45	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24153			33485	7356	23042	23090							0.08686350685502475
KNIIHSAAP	9	Unmodified	_KNIIHSAAP_					0	0	0		nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2607421875	2	475.774534	949.534515	0.49981	0.0002378	-1.4404	-0.00068529	-0.94055	-0.00044749	475.7736288865503	43.437	0.76107	43.467	42.939	43.7	0.030827					36	20	2	0	0	0	0.024263	1	3974	3974		51.335	13.524	1	724600			33486	2437	23043	23091	38452	38452					0.057728935086515776
KNIIYTIL	8	Unmodified	_KNIIYTIL_					0	0	0			REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.30023193359375	2	489.305136	976.595718	-0.51838	-0.00025364	-0.26869	-0.00013147	-0.78706	-0.00038511	489.30478572276365	63.108	0.6302	63.108	62.854	63.485	0					26	16	2	0	0	0	0.027866	1	7328	7328		17.365	0	1	829830	+		33487	34464	23044	23092	38453	38453					0.10648405488097978
KNIKELTSP	9	Unmodified	_KNIKELTSP_					0	0	0			REV__ENSG00000269791|ENST00000595235|SSX4B	REV__ENSG00000269791|ENST00000595235|SSX4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2982177734375	2	515.300581	1028.58661	-1.1243	-0.00057934	-0.91274	-0.00047033	-2.037	-0.0010497	515.300031937481	62.489	0.5605	62.249	61.932	62.492	-0.23926					30	17	2	0	0	0	0.53979	1	7255	7255		56.721	7.2795	1	5590100	+		33488	29151	23045	23093	38454	38454					0.07346012131756652
KNIKELTSP	9	Unmodified	_KNIKELTSP_					0	0	0			REV__ENSG00000269791|ENST00000595235|SSX4B	REV__ENSG00000269791|ENST00000595235|SSX4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2993774414062	2	515.300581	1028.58661	-1.604	-0.00082652	-0.56436	-0.00029081	-2.1683	-0.0011173	515.3001094362164	62.224	0.61223	62.287	61.912	62.524	0.062767					28	16	2	0	0	0	0.34489	1	7151	7151		69.628	7.5202	1	5638500	+		33489	29151	23045	23093	38455	38455					0.07346012131756652
KNILLLVNL	9	Unmodified	_KNILLLVNL_					0	0	0			REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.779541015625	2	520.347335	1038.68012	-0.12542	-6.5264E-05	-0.074529	-3.8781E-05	-0.19995	-0.00010405	520.3471778061678	86.506	0.34928	86.319	86.167	86.516	-0.18696					10	7	2	0	0	0	0.024541	1	10481	10481		17.365	11.052	1	53131	+		33490	32317	23046	23094	38456	38456					0.1623235630486306
KNILYTHSL	9	Unmodified	_KNILYTHSL_					0	0	0			REV__nc|ENSG00000231004|P0C854|CECR9	REV__nc|ENSG00000231004|P0C854|CECR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	544.808574	1087.60259	0.52718	0.00028721	-0.81463	-0.00044382	-0.28746	-0.00015661	544.8080417338763	85.751	0.7245	85.601	85.327	86.052	-0.14967					19	16	2	0	0	0	0.024506	1	10463	10463		23.042	1.0826	1	344590	+		33491	37147	23047	23095	38457	38457					0.062297183686723656
KNINLIIIL	9	Unmodified	_KNINLIIIL_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3558349609375	2	527.35516	1052.69577	0.27352	0.00014424	-0.60748	-0.00032036	-0.33396	-0.00017612	527.3547373713369	50.201	1.2292	50.282	49.954	51.183	0.080994					88	35	4	0	0	0	0.22754	1	5184	5184		85.359	5.6469	1	6828400			33492	5133	23048	23096	38458	38458					0.17152642821906738
KNINPLYVE	9	Unmodified	_KNINPLYVE_					0	0	0			REV__ENSG00000072422|ENST00000337910|RHOBTB1	REV__ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.3054809570312	2	545.300581	1088.58661	-0.42311	-0.00023072	2.257	0.0012308	1.8339	0.001	545.3009684905195	60.191	0.63116	60.191	59.914	60.546	0					27	16	3	0	0	0	0.024436	1	6921	6921		10.866	4.13	1	1021000	+		33493	20472	23049	23097	38459	38459					0.045860121317673475
KNIPHWIL	8	Unmodified	_KNIPHWIL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7685852050781	2	510.803094	1019.59164	0.49432	0.0002525	1.3881	0.00070906	1.8824	0.00096156	511.30472506622004	69.698	0.9902	69.405	68.97	69.96	-0.29291					52	24	3	0	0	0	0.027866	1	8305	8305		35.201	10.998	1	244660	+		33494	21977	23050	23098	38460	38460					0.08262360785033707
KNIPHWIL	8	Unmodified	_KNIPHWIL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.803094	1019.59164	-0.36376	-0.00018581	4.0649	0.0020763	3.7011	0.0018905	511.3053083697419	69.203	0.73508	69.203	69.056	69.791	0	-0.12929	0.00053037	NaN	35.201	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182710	+		33495	21977	23050	23098							0.08262360785033707
KNIPHWIL	8	Unmodified	_KNIPHWIL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.803094	1019.59164	-0.62695	-0.00032025	5.2054	0.0026589	4.5785	0.0023387	510.80751939896095	69.375	0.75055	69.39	69.245	69.995	0.015121	0.05724	0.0016955	NaN	35.201	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172410	+		33496	21977	23050	23098							0.08262360785033707
KNITAIIDL	9	Unmodified	_KNITAIIDL_					0	0	0			REV__ENSG00000049860|ENST00000261416|HEXB	REV__ENSG00000049860|ENST00000261416|HEXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7720031738281	2	500.8055	999.596446	-0.87064	-0.00043602	0.70745	0.0003543	-0.16319	-8.1724E-05	500.8056844813327	55.721	0.9613	55.565	55.011	55.972	-0.15655					57	26	3	0	0	0	0.024427	1	5965	5965		26.693	0	1	1240000	+		33497	20151	23051	23099	38461	38461					0.09663200137140393
KNITAIIDL	9	Unmodified	_KNITAIIDL_					0	0	0			REV__ENSG00000049860|ENST00000261416|HEXB	REV__ENSG00000049860|ENST00000261416|HEXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7724304199219	2	500.8055	999.596446	-1.3799	-0.00069107	0.74151	0.00037135	-0.63841	-0.00031972	500.80576825464124	55.81	0.82529	55.595	55.136	55.961	-0.21551					55	22	3	0	0	0	0.024381	1	5958	5958		29.15	3.6994	1	1069200	+		33498	20151	23051	23099	38462	38462					0.09663200137140393
KNITPRKK	8	Unmodified	_KNITPRKK_					0	0	0		ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.77215576171875	2	492.819276	983.623999	-0.43437	-0.00021406	-1.8798	-0.00092639	-2.3141	-0.0011405	492.8179389833143	20.977	0.2899	20.887	20.72	21.01	-0.090092					9	5	2	0	0	0	0.027866	1	593	593		37.159	15.199	1	27778			33499	2379	23052	23100	38463	38463					0.13153148188030173
KNIVPIALN	9	Unmodified	_KNIVPIALN_					0	0	0			REV__nc|ENSG00000138698|P52306-2|RAP1GDS1	REV__nc|ENSG00000138698|P52306-2|RAP1GDS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2953796386719	2	491.30821	980.601866	-0.17607	-8.6503E-05	-1.0835	-0.00053235	-1.2596	-0.00061886	491.30731137889245	56.793	0.30584	56.793	56.535	56.841	0					9	8	2	0	0	0	0.024381	1	6350	6350		45.952	16.802	1	200490	+		33500	23889	23053	23101	38464	38464					0.11078923719583145
KNKAAKRVK	9	Unmodified	_KNKAAKRVK_					0	0	0			REV__CAMKV|p.E70K|1|0.62|ENSG00000164076|chr3:49862064-49862064|C/T|missense_variant	REV__CAMKV|p.E70K|1|0.62|ENSG00000164076|chr3:49862064-49862064|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7877197265625	2	521.845825	1041.6771	-0.31818	-0.00016604	3.1161	0.0016261	2.7979	0.0014601	521.8471961912343	52.765	0.36034	52.638	52.432	52.792	-0.12706					10	8	2	0	0	0	0.024523	1	5472	5472		15.642	4.7763	1	186840	+		33501	19240	23054	23102	38465	38465					0.15792525970687166
KNKAYYNL	8	Unmodified	_KNKAYYNL_					0	0	0			REV__ENST00000455833.6_2_1:19234238-19234364:-|nuORF	REV__ENST00000455833.6_2_1:19234238-19234364:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2716979980469	2	507.274367	1012.53418	-0.9483	-0.00048105	-3.8432	-0.0019496	-4.7915	-0.0024306	507.2725204061933	31.251	1.1894	31.251	30.92	32.109	0					70	28	4	0	0	0	0.68535	1	2084	2084		68.485	0.99103	1	2917500	+		33502	32786	23055	23103	38466	38466					0.028414737887942465
KNKDAPKLI	9	Unmodified	_KNKDAPKLI_					0	0	0			REV__nc|ENSG00000172531|P62136-3|PPP1CA	REV__nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8178100585938	2	513.818941	1025.62333	0.14436	7.4175E-05	-1.1009	-0.00056565	-0.95651	-0.00049147	513.8184161292633	72.223	1.7207	72.223	71.795	73.516	0					110	42	4	0	0	0	0.30449	1	8817	8817		75.043	0.78827	1	21011000	+		33503	26682	23056	23104	38467	38467					0.11154308748336916
KNKDAPKLI	9	Unmodified	_KNKDAPKLI_					0	0	0			REV__nc|ENSG00000172531|P62136-3|PPP1CA	REV__nc|ENSG00000172531|P62136-3|PPP1CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8182373046875	2	513.818941	1025.62333	0.26414	0.00013572	-1.3073	-0.0006717	-1.0431	-0.00053598	513.818270164662	72.272	1.5656	72.282	71.953	73.519	0.0097733					103	39	4	0	0	0	0.2508	3	8732	8720;8732;8744		82.241	8.756	1	21406000	+		33504	26682	23056	23104	38468;38469;38470	38469					0.11154308748336916
KNKEVLPK	8	Unmodified	_KNKEVLPK_					0	0	0			REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.29095458984375	2	478.300384	954.586216	0.84109	0.00040229	-1.2041	-0.00057593	-0.36303	-0.00017364	478.29986409420513	67.638	0.9758	67.638	67.126	68.102	0					86	24	5	0	0	0	0.027866	1	8113	8113		37.159	0	1	5388300	+		33505	24872	23057	23105	38471	38471					0.10710637202566886
KNKEVLPK	8	Unmodified	_KNKEVLPK_					0	0	0			REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.30120849609375	2	478.300384	954.586216	0.41182	0.00019697	-0.67689	-0.00032376	-0.26507	-0.00012678	478.300124402668	67.974	1.491	67.686	67.148	68.639	-0.28834					101	37	5	0	0	0	0.74904	1	8085	8085		63.306	0	1	5022000	+		33506	24872	23057	23105	38472	38472					0.10710637202566886
KNKEVLPK	8	Unmodified	_KNKEVLPK_					0	0	0			REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.300384	954.586216	1.2803	0.00061236	-0.97284	-0.00046531	0.30745	0.00014705	478.2997805037228	67.936	0.53348	67.68	67.412	67.945	-0.25516	-0.004735	-0.00025756	NaN	45.952	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272460	+		33507	24872	23057	23105							0.10710637202566886
KNKEVLPK	8	Unmodified	_KNKEVLPK_					0	0	0			REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.300384	954.586216	0.11312	5.4107E-05	0.087167	4.1692E-05	0.20029	9.5799E-05	478.3003317890748	67.89	0.69661	67.657	67.345	68.042	-0.23376	-0.028451	0.00075645	NaN	45.952	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229730	+		33508	24872	23057	23105							0.10710637202566886
KNKEVLPK	8	Unmodified	_KNKEVLPK_					0	0	0			REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	REV__nc|ENSG00000152969|Q96N16-6|JAKMIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.300384	954.586216	0.1787	8.5473E-05	-0.16263	-7.7786E-05	0.016071	7.6867E-06	478.3001937199745	67.908	0.61408	67.67	67.378	67.992	-0.23814	-0.015168	0.00051749	NaN	45.952	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278100	+		33509	24872	23057	23105							0.10710637202566886
KNKFANFAVK	10	Unmodified	_KNKFANFAVK_					0	0	0			REV__ENSG00000154646|ENST00000284885|TMPRSS15	REV__ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.8409423828125	2	583.837665	1165.66078	3.0434	0.0017769	4.4098	0.0025746	7.4532	0.0043515	583.8400631978187	18.142	0.39709	17.899	17.677	18.074	-0.24256					11	7	2	0	0	0	1.0393	1	247	247		40.778	2.9666	1	55983	+		33510	24969	23058	23106	38473	38473					0.08457400013935512
KNKFSLIEL	9	Unmodified	_KNKFSLIEL_					0	0	0			REV__ENST00000533705.5_1_9:86281293-86281326:-|nuORF	REV__ENST00000533705.5_1_9:86281293-86281326:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2867431640625	2	546.326599	1090.63865	0.36084	0.00019714	-0.26732	-0.00014604	0.093524	5.1095E-05	546.3265490356463	83.928	0.93418	83.717	83.393	84.327	-0.21159					29	21	2	0	0	0	0.018983	1	10191	10191		129.68	12.779	1	96465	+		33511	34616	23059	23107	38474	38474					0.09695175545516577
KNKFVALLV	9	Unmodified	_KNKFVALLV_					0	0	0			REV__MC2R|p.H238Mfs*4|1|0.26|ENSG00000185231|chr18:13884808-13884808|A/-|frameshift_variant	REV__MC2R|p.H238Mfs*4|1|0.26|ENSG00000185231|chr18:13884808-13884808|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.3141479492188	2	516.334227	1030.6539	0.62851	0.00032452	-0.99345	-0.00051295	-0.36494	-0.00018843	516.3325853312274	98.079	0.40782	97.943	97.739	98.147	-0.13625					16	10	2	0	0	0	0.024466	1	12131	12131		25.45	0	1	151730	+		33512	27743	23060	23108	38475	38475					0.1398008713335912
KNKGIKASR	9	Unmodified	_KNKGIKASR_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2869567871094	2	501.314358	1000.61416	-0.65108	-0.0003264	2.6413	0.0013241	1.9902	0.00099774	501.31562115805883	62.875	0.36092	62.875	62.729	63.09	0					12	8	2	0	0	0	0.0242	1	7319	7319		69.628	17.328	1	152510	+		33513	25609	23061	23109	38476	38476					0.11387960182651113
KNKGQLTKS	9	Unmodified	_KNKGQLTKS_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000492940.1_1_7:35930257-35938044:+|nuORF;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000513820.1_1_5:118462594-118462864:-|nuORF;ENST00000420492.2_1_9:101369884-101370217:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7542419433594	2	502.298373	1002.58219	0.25335	0.00012726	0.55006	0.0002763	0.80342	0.00040355	502.29840769642146	25.95	0.25457	26.03	25.835	26.09	0.08009					9	5	2	0	0	0	0.024506	1	1223	1223		10.866	0	1	99403			33514	3929	23062	23110	38477	38477					0.08100547708841077
KNKGRGFY	8	Unmodified	_KNKGRGFY_					0	0	0			REV__ENSG00000110090|ENST00000265641|CPT1A	REV__ENSG00000110090|ENST00000265641|CPT1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.78204345703125	2	485.266876	968.519199	-0.14975	-7.2671E-05	-3.9252	-0.0019048	-4.0749	-0.0019774	485.2647929801141	24.253	0.42331	24.078	23.829	24.252	-0.17484					14	9	2	0	0	0	0.027866	1	1050	1050		19.36	12.167	1	67803	+		33515	21839	23063	23111	38478	38478					0.0336802671146188
KNKGWALL	8	Unmodified	_KNKGWALL_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2583312988281	2	465.281995	928.549437	2.2609	0.0010519	-2.7247	-0.0012677	-0.46381	-0.0002158	465.28071110144793	63.947	0.61044	63.993	63.724	64.335	0.045502					22	16	2	0	0	0	0.027866	1	7383	7383		21.702	0	1	277570			33516	2315	23064	23112	38479	38479					0.08230385376646154
KNKHFKAQLV	10	Unmodified	_KNKHFKAQLV_					0	0	0		NCK2|p.V335A|1|0.13|ENSG00000071051|chr2:105893037-105893037|T/C|missense_variant	NCK2|p.V335A|1|0.13|ENSG00000071051|chr2:105893037-105893037|T/C|missense_variant	NCK2|p.V335A|1|0.13|ENSG00000071051|chr2:105893037-105893037|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2012634277344	3	404.911902	1211.71388	1.7046	0.0006902	4.4171	0.0017885	6.1217	0.0024787	404.91363130220236	20.359	0.68109	20.163	19.901	20.582	-0.19577					39	13	4	0	0	0	0.03519	1	575	575		3.8434	0	1	306700			33517	18862	23065	23113	38480	38480					0.11648777796585819
KNKILFVHRA	10	Unmodified	_KNKILFVHRA_					0	0	0			REV__ENST00000322940.10_1_9:111702093-111702270:+|nuORF	REV__ENST00000322940.10_1_9:111702093-111702270:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2471618652344	3	409.25578	1224.74551	0.62336	0.00025511	3.4824	0.0014252	4.1057	0.0016803	409.25791360338843	37.632	0.19063	37.664	37.525	37.715	0.032272					7	4	3	0	0	0	0.03519	1	3028	3028		14.086	0	1	62822	+		33518	30366	23066	23114	38481	38481					0.14212770550557252
KNKIRSLKE	9	Unmodified	_KNKIRSLKE_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.265869140625	2	558.348397	1114.68224	-1.0519	-0.00058732	4.2071	0.002349	3.1552	0.0017617	558.3506179894027	83.715	0.73453	83.625	83.469	84.203	-0.090454					29	16	2	0	0	0	0.024397	1	10459	10459		56.721	8.8055	1	47274	+		33519	27972	23067	23115	38482	38482					0.12948785042658528
KNKIVIPK	8	Unmodified	_KNKIVIPK_					0	0	0		nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.3027648925781	2	470.32112	938.627687	0.75757	0.0003563	-0.83472	-0.00039259	-0.077152	-3.6286E-05	470.32060468903114	71.832	0.29926	71.544	71.351	71.651	-0.28858					11	7	2	0	0	0	0.027866	1	8657	8657		12.959	0	1	140360			33520	4829	23068	23116	38483	38483					0.15591817961887955
KNKKHDKRI	9	Unmodified	_KNKKHDKRI_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.8583984375	2	583.859464	1165.70437	-1.4128	-0.00082485	0.41791	0.000244	-0.99484	-0.00058085	583.8595208920531	97.016	1.112	97.016	96.615	97.727	0					84	24	5	0	0	0	0.77768	1	12387	12387		40.778	0	1	1406200	+		33521	23960	23069	23117	38484	38484					0.1281500951106409
KNKKLFSPT	9	Unmodified	_KNKKLFSPT_					0	0	0			REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7973022460938	2	531.818941	1061.62333	0.10867	5.7791E-05	-3.7644	-0.002002	-3.6558	-0.0019442	531.8168793985271	90.274	1.0293	90.136	89.835	90.864	-0.13824					42	24	2	0	0	0	0.024477	1	11119	11119		27.882	0	1	645360	+		33522	24631	23070	23118	38485	38485					0.09498308748334239
KNKKNKDK	8	Unmodified	_KNKKNKDK_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1;nc|ENSG00000179915|Q9ULB1-4|NRXN1;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	501.806365	1001.59818	0.16583	8.3214E-05	3.5997	0.0018064	3.7656	0.0018896	501.80801832823744	24.055	0.73872	23.84	23.305	24.044	-0.21511					32	16	3	0	0	0	0.027866	1	1034	1034		55.504	22.692	1	184410			33523	8937	23071	23119	38486	38486					0.09744253945746095
KNKKPITFS	9	Unmodified	_KNKKPITFS_					0	0	0			REV__ENST00000406807.2_1_6:149812705-149813218:-|nuORF;REV__ENSG00000133773|ENST00000256151|CCDC59	REV__ENST00000406807.2_1_6:149812705-149813218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.79736328125	2	531.818941	1061.62333	-0.28732	-0.0001528	-3.1526	-0.0016766	-3.4399	-0.0018294	531.8171474804285	90.15	1.1527	90.133	89.795	90.948	-0.016716					50	27	3	0	0	0	0.024511	1	11446	11446		40.778	10.46	1	477020	+		33524	31928;23393	23072	23120	38487	38487					0.09498308748311501
KNKKPKSSA	9	Unmodified	_KNKKPKSSA_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.3008728027344	2	494.300916	986.587279	0.57173	0.00028261	-1.1227	-0.00055496	-0.55099	-0.00027236	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	0.91321	1	12207	12207		31.53	2.3803	1	37513000			33525	2577	23073	23121	38488	38488					0.09344851571472645
KNKKPKSSA	9	Unmodified	_KNKKPKSSA_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3009033203125	2	494.300916	986.587279	0.096981	4.7938E-05	-0.41903	-0.00020712	-0.32204	-0.00015919	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.91321	1	11997	11997		31.53	2.3803	1	34796000			33526	2577	23073	23121	38489	38489					0.09344851571472645
KNKKVLFN	8	Unmodified	_KNKKVLFN_					0	0	0		ENST00000476570.2_1_13:44430578-44443512:-|nuORF;nc|ENSG00000151773|Q5T0U0-2|CCDC122;ENSG00000151773|ENST00000444614|CCDC122	ENST00000476570.2_1_13:44430578-44443512:-|nuORF	ENST00000476570.2_1_13:44430578-44443512:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.8053283691406	2	495.808377	989.6022	-0.22031	-0.00010923	-3.8416	-0.0019047	-4.0619	-0.0020139	495.80636838214787	89.904	1.4064	89.904	89.523	90.929	0					89	33	5	0	0	0	1.0574	1	11352	11352		26.796	1.3459	1	1146200			33527	15088	23074	23122	38490	38490					0.10698343439469227
KNKKWFESE	9	Unmodified	_KNKKWFESE_					0	0	0			REV__ENSG00000180628|ENST00000336126|PCGF5	REV__ENSG00000180628|ENST00000336126|PCGF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	599.2852172851562	2	598.308938	1194.60332	-0.61013	-0.00036505	3.3989	0.0020336	2.7888	0.0016686	598.3108166729303	41.376	0.60723	41.24	41.022	41.629	-0.13553					32	15	3	0	0	0	0.024539	1	3660	3660		14.865	0	1	254820	+		33528	27351	23075	23123	38491	38491					0.013805130177161118
KNKLFHWM	8	Unmodified	_KNKLFHWM_					0	0	0			REV__ENST00000280969.9_1_5:162945379-162945454:+|nuORF	REV__ENST00000280969.9_1_5:162945379-162945454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.2714233398438	2	552.294579	1102.57461	-0.27818	-0.00015364	-4.4239	-0.0024433	-4.7021	-0.002597	552.2919634813479	77.461	0.66901	77.25	76.995	77.664	-0.21087					32	15	3	0	0	0	0.027866	1	9577	9577		26.796	0	1	651570	+		33529	29881	23076	23124	38492	38492					0.02742116907552372
KNKLIVARFE	10	Unmodified	_KNKLIVARFE_					0	0	0			REV__ENST00000556516.1_1_14:71517389-71527455:+|nuORF	REV__ENST00000556516.1_1_14:71517389-71527455:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.58453369140625	3	406.583674	1216.72919	0.66258	0.00026939	-0.23522	-9.5638E-05	0.42735	0.00017375	406.9180894739433	110.55	0.22615	110.54	110.38	110.6	-0.011299					11	7	2	0	0	0	1.1151	1	13954	13954		18.531	0.69791	1	468100	+		33530	35038	23077	23125	38493	38493					0.1294964459377752
KNKLIVARFE	10	Unmodified	_KNKLIVARFE_					0	0	0			REV__ENST00000556516.1_1_14:71517389-71527455:+|nuORF	REV__ENST00000556516.1_1_14:71517389-71527455:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	406.583674	1216.72919	0.66258	0.00026939	-0.23522	-9.5638E-05	0.42735	0.00017375	406.9180894739433	110.55	0.22615	110.54	110.38	110.6	-0.011299	-0.018068	-0.00070154	NaN	18.531	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468100	+		33531	35038	23077	23125							0.1294964459377752
KNKLLRSPQ	9	Unmodified	_KNKLLRSPQ_					0	0	0			REV__ENSG00000163867|ENST00000357182|ZMYM6;REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	REV__ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3311767578125	2	542.33529	1082.65603	-1.2165	-0.00065975	-0.02414	-1.3092E-05	-1.2406	-0.00067284	542.3351596408047	45.281	0.38122	45.132	44.866	45.247	-0.1488					26	10	4	0	0	0	0.024397	1	4324	4324		24.519	0	1	1200000	+		33532	25647;33762	23078	23126	38494	38494					0.1180051587118669
KNKLMGKP	8	Unmodified	_KNKLMGKP_					0	0	0			REV__nc|ENSG00000103222|P33527-6|ABCC1	REV__nc|ENSG00000103222|P33527-6|ABCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.267578125	2	458.275855	914.537157	-1.2172	-0.00055783	-2.6313	-0.0012059	-3.8485	-0.0017637	458.274274357456	48.575	0.21153	48.299	48.151	48.362	-0.27598					7	5	2	0	0	0	0.027866	1	4803	4803		10.265	0	1	223710	+		33533	21366	23079	23127	38495	38495					0.07647025641961136
KNKNDLFEY	9	Unmodified	_KNKNDLFEY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8031005859375	2	585.793121	1169.57169	-0.79235	-0.00046416	0.71381	0.00041814	-0.078546	-4.6012E-05	585.7933453880787	54.673	0.21348	54.442	54.246	54.459	-0.23087					10	5	2	0	0	0	0.024523	1	5802	5802		15.642	0	1	199070			33534	2101	23080	23128	38496	38496					-0.00631479736239271
KNKNDLFEY	9	Unmodified	_KNKNDLFEY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	585.793121	1169.57169	-1.8559	-0.0010872	1.5404	0.00090238	-0.31543	-0.00018478	585.7938938040016	54.466	0.40714	54.466	54.249	54.656	0	0.059429	0.0019504	NaN	42.396	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145550			33535	2101	23080	23128							-0.00631479736239271
KNKNDLFEY	9	Unmodified	_KNKNDLFEY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	585.793121	1169.57169	-1.1161	-0.00065382	0.9197	0.00053875	-0.19644	-0.00011507	585.7939871514773	54.556	0.37883	54.405	54.229	54.608	-0.15036	-0.0010288	0.0012232	NaN	42.396	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162800			33536	2101	23080	23128							-0.00631479736239271
KNKNDLFEY	9	Unmodified	_KNKNDLFEY_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	585.793121	1169.57169	1.2634	0.0007401	-1.8319	-0.0010731	-0.56844	-0.00033299	585.7921003069921	54.214	0.31232	54.312	54.114	54.426	0.098015	-0.094108	-0.0020005	NaN	42.396	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180890			33537	2101	23080	23128							-0.00631479736239271
KNKNKVTEA	9	Unmodified	_KNKNKVTEA_					0	0	0		ENST00000556516.1_1_14:71517389-71527455:+|nuORF	ENST00000556516.1_1_14:71517389-71527455:+|nuORF	ENST00000556516.1_1_14:71517389-71527455:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.3139038085938	2	516.29583	1030.57711	0.18093	9.3412E-05	3.2898	0.0016985	3.4707	0.0017919	516.2977127312952	98.163	0.16929	98.161	98.097	98.267	-0.0020752					6	3	2	0	0	0	0.024344	1	12459	12459		45.972	6.7194	1	63000			33538	16712	23081	23129	38497	38497					0.06304243846238933
KNKNMFTLLI	10	Unmodified	_KNKNMFTLLI_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3551025390625	2	611.354834	1220.69511	-1.8282	-0.0011177	3.7698	0.0023047	1.9416	0.001187	611.3569960574569	91.44	0.76177	91.44	91.011	91.772	0					33	17	2	0	0	0	1.0816	1	11615	11615		35.152	3.5178	1	1547500	+		33539	27983	23082	23130	38498	38498					0.0935948011056098
KNKNMFTLLI	10	Unmodified	_KNKNMFTLLI_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3563232421875	2	611.354834	1220.69511	-0.81332	-0.00049722	2.9276	0.0017898	2.1143	0.0012926	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.118	1	11961	11961		30.318	5.7985	1	11166000	+		33540	27983	23082	23130	38499	38499					0.0935948011056098
KNKNMFTLLI	10	Unmodified	_KNKNMFTLLI_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.35595703125	2	611.354834	1220.69511	-0.32068	-0.00019605	2.5162	0.0015383	2.1955	0.0013422	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.0002	1	11950	11950		45.972	9.5255	1	11218000	+		33541	27983	23082	23130	38500	38500					0.0935948011056098
KNKNMFTLLI	10	Unmodified	_KNKNMFTLLI_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.352294921875	2	611.354834	1220.69511	-0.79598	-0.00048662	2.8399	0.0017362	2.0439	0.0012496	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.0616	1	11680	11680		37.812	2.6595	1	4189200	+		33542	27983	23082	23130	38501	38501					0.0935948011056098
KNKNMFTLLI	10	Unmodified	_KNKNMFTLLI_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3565673828125	2	611.354834	1220.69511	-1.352	-0.00082658	3.5207	0.0021524	2.1687	0.0013258	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.118	1	11933	11933		30.318	2.4355	1	11699000	+		33543	27983	23082	23130	38502	38502					0.0935948011056098
KNKNMFTLLI	10	Unmodified	_KNKNMFTLLI_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3562622070312	2	611.354834	1220.69511	-1.8097	-0.0011063	3.9907	0.0024397	2.181	0.0013334	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.0002	1	11624	11624		45.972	0.020292	1	13060000	+		33544	27983	23082	23130	38503	38503					0.0935948011056098
KNKNMFTLLI	10	Unmodified	_KNKNMFTLLI_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3567504882812	2	611.354834	1220.69511	-0.45812	-0.00028007	2.6555	0.0016234	2.1974	0.0013434	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.0002	3	11682	11635;11647;11682		45.972	13.16	1	13365000	+		33545	27983	23082	23130	38504;38505;38506	38506					0.0935948011056098
KNKNTESDVM	10	Unmodified	_KNKNTESDVM_					0	0	0			REV__ENST00000371997.3_1_20:46211944-46212001:+|nuORF	REV__ENST00000371997.3_1_20:46211944-46212001:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.2813720703125	2	583.27952	1164.54449	-0.33857	-0.00019748	-4.2723	-0.0024919	-4.6109	-0.0026894	583.7791093130263	49.421	0.22937	49.32	49.186	49.416	-0.1008					7	5	2	0	0	0	0.03519	1	4964	4964		24.519	0	1	148740	+		33546	31186	23083	23131	38507	38507					-0.031203313389369214
KNKQQQLQV	9	Unmodified	_KNKQQQLQV_					0	0	0			REV__nc|ENSG00000162520|Q9H7C4-2|SYNC	REV__nc|ENSG00000162520|Q9H7C4-2|SYNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.7958984375	2	557.32238	1112.63021	-0.64313	-0.00035843	0.59936	0.00033404	-0.043775	-2.4397E-05	557.3224655009977	39.277	0.42658	39.301	39.099	39.526	0.023727					20	11	2	0	0	0	0.024457	1	3337	3337		29.15	0	1	195140	+		33547	25451	23084	23132	38508	38508					0.07839621628886562
KNKQQQLQV	9	Unmodified	_KNKQQQLQV_					0	0	0			REV__nc|ENSG00000162520|Q9H7C4-2|SYNC	REV__nc|ENSG00000162520|Q9H7C4-2|SYNC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.32238	1112.63021	-0.18641	-0.00010389	-0.40276	-0.00022447	-0.58917	-0.00032836	557.3219791747215	39.059	0.35223	39.059	38.902	39.254	0	-0.044842	-0.00064605	NaN	44.117	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278650	+		33548	25451	23084	23132							0.07839621628886562
KNKQREEGD	9	Unmodified	_KNKQREEGD_					0	0	0			REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3143920898438	2	552.275626	1102.5367	0.073388	4.0531E-05	-1.7911	-0.00098918	-1.7177	-0.00094865	552.273488104894	72.731	0.89362	72.466	72.042	72.936	-0.26479					35	20	3	0	0	0	0.024477	1	8547	8547		27.882	1.1893	1	236460	+		33549	24010	23085	23133	38509	38509					-0.010467225441971095
KNKQREEGD	9	Unmodified	_KNKQREEGD_					0	0	0			REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.275626	1102.5367	0.28345	0.00015654	-3.4608	-0.0019113	-3.1774	-0.0017548	552.2735801330051	72.294	0.43888	72.294	72.054	72.493	0	-0.039923	-0.00027976	NaN	27.882	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299510	+		33550	24010	23085	23133							-0.010467225441971095
KNKQREEGD	9	Unmodified	_KNKQREEGD_					0	0	0			REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.275626	1102.5367	0.36408	0.00020107	-3.3886	-0.0018714	-3.0245	-0.0016704	552.2735131059757	72.617	0.69045	72.336	72.1	72.791	-0.28124	0.0018615	-0.00019997	NaN	27.882	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315870	+		33551	24010	23085	23133							-0.010467225441971095
KNKQREEGD	9	Unmodified	_KNKQREEGD_					0	0	0			REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	552.275626	1102.5367	0.45733	0.00025257	-3.5367	-0.0019533	-3.0794	-0.0017007	552.2736052962643	72.285	0.59914	72.294	72.094	72.693	0.0097733	-0.039758	-0.0003636	NaN	27.882	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282030	+		33552	24010	23085	23133							-0.010467225441971095
KNKRGGRW	8	Unmodified	_KNKRGGRW_					0	0	0		ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENST00000507665.5_1_4:99808220-99850263:-|nuORF	ENST00000507665.5_1_4:99808220-99850263:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2915954589844	2	501.291217	1000.56788	0.66235	0.00033203	-2.1656	-0.0010856	-1.5033	-0.00075358	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	1.0239	1	10154	10154		33.516	5.6333	1	3151900			33553	6190	23086	23134	38510	38510					0.06761940071237404
KNKRGRKG	8	Unmodified	_KNKRGRKG_					0	0	0		nc|ENSG00000135148|O14545-2|TRAFD1	nc|ENSG00000135148|O14545-2|TRAFD1	nc|ENSG00000135148|O14545-2|TRAFD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.27978515625	2	472.299042	942.583531	-0.60134	-0.00028401	3.5356	0.0016698	2.9342	0.0013858	472.30058993589876	55.369	0.84548	55.223	54.948	55.794	-0.14609					52	23	3	0	0	0	0.027866	1	5894	5894		33.516	14.156	1	1440400			33554	18292	23087	23135	38511	38511					0.10994226588286438
KNKRLSGF	8	Unmodified	_KNKRLSGF_					0	0	0			REV__ICE1|p.K730Ifs*29|1|0.13|ENSG00000164151|chr5:5461522-5461523|-/TATCTGTATCATTACC|frameshift_variant	REV__ICE1|p.K730Ifs*29|1|0.13|ENSG00000164151|chr5:5461522-5461523|-/TATCTGTATCATTACC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2609558105469	2	475.282526	948.550499	-0.9476	-0.00045038	-0.25313	-0.00012031	-1.2007	-0.00057069	475.2829633889419	29.142	0.43377	28.897	28.621	29.055	-0.24524					15	9	2	0	0	0	0.027866	1	1730	1730		14.664	0	1	72403	+		33555	25707	23088	23136	38512	38512					0.07416599745567964
KNKRTKRV	8	Unmodified	_KNKRTKRV_					0	0	0			REV__ENSG00000123562|ENST00000441076|MORF4L2	REV__ENSG00000123562|ENST00000441076|MORF4L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3128662109375	2	515.335624	1028.6567	0.10453	5.3866E-05	-2.6449	-0.001363	-2.5404	-0.0013091	515.3337554419294	68.564	0.23466	68.272	68.092	68.326	-0.29267					10	5	3	0	0	0	0.027866	1	8189	8189		31.955	5.1588	1	115750	+		33556	22705	23089	23137	38513	38513					0.14351355310895997
KNKRVRVV	8	Unmodified	_KNKRVRVV_					0	0	0		SMCO1|p.A194Qfs*15|1|0.35|ENSG00000214097|chr3:196507956-196507956|C/-|frameshift_variant;ENSG00000214097|ENST00000397537|SMCO1	SMCO1|p.A194Qfs*15|1|0.35|ENSG00000214097|chr3:196507956-196507956|C/-|frameshift_variant	SMCO1|p.A194Qfs*15|1|0.35|ENSG00000214097|chr3:196507956-196507956|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7786865234375	2	499.832717	997.650882	0.29333	0.00014662	1.6868	0.0008431	1.9801	0.00098972	499.8334559431868	69.223	0.37599	68.93	68.753	69.129	-0.29292					16	9	3	0	0	0	0.027866	1	8300	8300		25.45	13.939	1	90648			33557	10542	23090	23138	38514	38514					0.15196256799231378
KNKSAEVNI	9	Unmodified	_KNKSAEVNI_					0	0	0			REV__ENSG00000173914|ENST00000310046|RBM4B	REV__ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7843933105469	2	501.782556	1001.55056	-0.55112	-0.00027654	2.8691	0.0014397	2.318	0.0011631	501.7837757406666	72.139	1.5315	71.941	71.428	72.96	-0.19811					61	36	3	0	0	0	0.34489	1	8429	8429		69.628	1.1429	1	3791800	+		33558	26820	23091	23139	38515	38515					0.04984554954910436
KNKSRCYR	8	Unmodified	_KNKSRCYR_					0	0	0			REV__nc|ENSG00000169851|O60245|PCDH7	REV__nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.74853515625	2	527.782367	1053.55018	0.4913	0.0002593	-0.94721	-0.00049992	-0.45591	-0.00024062	527.7816871918213	84.577	0.75175	84.418	84.106	84.858	-0.15868					36	16	3	0	0	0	0.027866	1	10278	10278		30.318	0	1	647420	+		33559	26402	23092	23140	38516	38516					0.025548567540454314
KNKSVIFRVIC	11	Unmodified	_KNKSVIFRVIC_					0	0	0			REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.8815002441406	3	436.260314	1305.75911	-0.71822	-0.00031333	4.0995	0.0017884	3.3812	0.0014751	436.26224177192347	39.475	1.297	39.376	38.772	40.069	-0.098755					109	35	5	0	0	0	0.02478	1	3391	3391		32.034	14.201	1	5593200	+		33560	26548	23093	23141	38517	38517					0.11846260267475373
KNKSVKVI	8	Unmodified	_KNKSVKVI_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2197570800781	2	458.302927	914.591301	-1.251	-0.00057334	1.2811	0.00058714	0.030115	1.3802E-05	458.3032724349955	40.636	0.65112	40.405	40.12	40.771	-0.23029					39	17	3	0	0	0	0.027866	1	3514	3514		37.159	10.466	1	938670	+		33561	23231	23094	23142	38518	38518					0.1305894106518508
KNKSVKVI	8	Unmodified	_KNKSVKVI_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.302927	914.591301	0.53308	0.00024431	-0.81375	-0.00037295	-0.28068	-0.00012864	458.3023084088488	40.019	0.50659	40.019	39.808	40.314	0	-0.22874	-0.001013	NaN	37.159	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	945730	+		33562	23231	23094	23142							0.1305894106518508
KNKSVKVI	8	Unmodified	_KNKSVKVI_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	458.302927	914.591301	-0.16566	-7.5921E-05	-0.41286	-0.00018921	-0.57851	-0.00026513	458.30243813162605	40.169	0.66424	40.057	39.754	40.418	-0.11222	-0.19049	-0.0006455	NaN	37.159	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	942220	+		33563	23231	23094	23142							0.1305894106518508
KNKSVKVI	8	Unmodified	_KNKSVKVI_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	458.302927	914.591301	-0.39578	-0.00018139	0.7242	0.0003319	0.32841	0.00015051	458.30308026095577	40.317	0.50304	40.34	40.126	40.629	0.023006	0.092671	0.00039673	NaN	37.159	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	921760	+		33564	23231	23094	23142							0.1305894106518508
KNKTISQLN	9	Unmodified	_KNKTISQLN_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3034057617188	2	523.303655	1044.59276	0.13302	6.9608E-05	-1.6088	-0.00084187	-1.4758	-0.00077227	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.82115	2	10834	10834;11110		37.812	4.9991	1	10615000			33565	1596	23095	23143	38519;38520	38519					0.07224530363305348
KNKVAAMGFDA	11	Unmodified	_KNKVAAMGFDA_					0	0	0			REV__PCCB|p.D98V|1|0.17|ENSG00000114054|chr3:136255965-136255965|A/T|missense_variant	REV__PCCB|p.D98V|1|0.17|ENSG00000114054|chr3:136255965-136255965|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.7738647460938	2	576.297516	1150.58048	-0.078226	-4.5081E-05	-2.7081	-0.0015607	-2.7863	-0.0016057	576.2957112820374	56.673	0.57782	56.471	56.132	56.71	-0.20208					41	14	4	0	0	0	0.024745	1	6136	6136		33.922	0	1	798200	+		33566	37352	23096	23144	38521	38521					0.011211706285848777
KNKVKAVKP	9	Unmodified	_KNKVKAVKP_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2718200683594	2	506.337301	1010.66005	-0.36721	-0.00018593	0.17498	8.86E-05	-0.19223	-9.7331E-05	506.3372357215226	31.425	0.57963	31.437	31.084	31.663	0.011797					27	13	3	0	0	0	0.02435	1	2056	2056		42.396	16.822	1	108660	+		33567	21220	23097	23145	38522	38522					0.15514605364887757
KNKVKAVKP	9	Unmodified	_KNKVKAVKP_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27105712890625	2	506.337301	1010.66005	-0.25199	-0.00012759	-0.029547	-1.4961E-05	-0.28153	-0.00014255	506.33718735221123	31.185	0.69704	31.254	30.87	31.567	0.06896					26	16	2	0	0	0	0.024523	1	1962	1962		29.15	7.1897	1	102330	+		33568	21220	23097	23145	38523	38523					0.15514605364887757
KNKVVTTP	8	Unmodified	_KNKVVTTP_					0	0	0		nc|ENSG00000160221|P0DPI2-2|GATD3;ENSG00000160221|ENST00000291577|GATD3	nc|ENSG00000160221|P0DPI2-2|GATD3	nc|ENSG00000160221|P0DPI2-2|GATD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.74072265625	2	443.77146	885.528367	-0.27479	-0.00012195	-1.4388	-0.00063852	-1.7136	-0.00076047	443.7694314179557	22.408	0.23412	22.408	22.245	22.479	0					5	4	2	0	0	0	0.027866	1	785	785		29.15	14.285	1	7340.8			33569	6795	23098	23146	38524	38524					0.08102375277132978
KNLAANRH	8	Unmodified	_KNLAANRH_					0	0	0		nc|ENSG00000143469|Q8NB59-2|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2818298339844	2	462.262125	922.509697	0.79828	0.00036901	-0.21824	-0.00010088	0.58004	0.00026813	462.2621379570843	76.538	0.12275	76.55	76.488	76.611	0.011635					4	2	2	0	0	0	0.027866	1	9356	9356		33.516	0	1	41303			33570	18347	23099	23147	38525	38525					0.04534258425940152
KNLARQNPY	9	Unmodified	_KNLARQNPY_					0	0	0		ENST00000392250.6_1_19:32975010-32975169:+|nuORF	ENST00000392250.6_1_19:32975010-32975169:+|nuORF	ENST00000392250.6_1_19:32975010-32975169:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8241577148438	2	552.301447	1102.58834	-0.072228	-3.9892E-05	-0.46417	-0.00025636	-0.5364	-0.00029625	552.3019544616476	75.247	0.73874	75.257	75.012	75.751	0.010376					28	19	3	0	0	0	0.024427	1	9204	9204		42.396	13.247	1	147540			33571	13409	23100	23148	38526	38526					0.04115065940391105
KNLDHVNKI	9	Unmodified	_KNLDHVNKI_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L;ENSG00000152217|ENST00000649279|SETBP1	nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000152217|ENST00000649279|SETBP1	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7879028320312	2	540.811648	1079.60874	-0.38225	-0.00020672	-0.57996	-0.00031365	-0.96221	-0.00052038	540.8112179156832	46.725	0.59329	46.725	46.447	47.04	0					38	15	4	0	0	0	0.021219	1	4640	4640		112.41	32.96	1	1401900			33572	3553;6256	23101	23149	38527	38527					0.07212236600184951
KNLEENEED	9	Unmodified	_KNLEENEED_					0	0	0			REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2660522460938	2	560.243657	1118.47276	0.51876	0.00029063	1.0486	0.00058744	1.5673	0.00087808	560.2440968167393	83.6	0.62833	83.431	83.162	83.79	-0.16915					23	14	2	0	0	0	0.02435	1	10092	10092		60.972	15.02	1	258500	+		33573	33798	23102	23150	38528	38528					-0.08173547491787758
KNLFEGRGY	9	Unmodified	_KNLFEGRGY_					0	0	0		PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.2804565429688	2	542.282723	1082.55089	-0.85072	-0.00046133	0.5736	0.00031106	-0.27711	-0.00015027	542.2829616630574	52.112	1.0755	51.994	51.646	52.721	-0.11875					70	27	4	0	0	0	0.6504	1	5382	5382		49.442	1.482	1	5246800			33574	10118	23103	23151	38529	38529					0.012919746747684258
KNLFKRNNSND	11	Unmodified	_KNLFKRNNSND_					0	0	0			REV__nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000163635|O15265-3|ATXN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7431640625	3	450.568863	1348.68476	-0.60008	-0.00027038	0.56872	0.00025625	-0.031359	-1.413E-05	450.56914447656976	26.551	0.48776	26.632	26.543	27.031	0.081293					17	11	2	0	0	0	0.024801	1	1357	1357		2.8518	0	1	27220	+		33575	25607	23104	23152	38530	38530					0.024365887096791994
KNLFKRNNSND	11	Unmodified	_KNLFKRNNSND_					0	0	0			REV__nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000163635|O15265-3|ATXN7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	450.568863	1348.68476	-0.23155	-0.00010433	-0.40951	-0.00018451	-0.64107	-0.00028884	450.568800271962	26.713	0.41435	26.69	26.569	26.984	-0.023088	0.028718	-0.0009036	NaN	2.8518	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29993	+		33576	25607	23104	23152							0.024365887096791994
KNLFLIKV	8	Unmodified	_KNLFLIKV_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.31402587890625	2	487.823495	973.632438	0.099694	4.8633E-05	2.7938	0.0013629	2.8935	0.0014115	487.82484307171376	25.531	0.3354	25.36	25.2	25.536	-0.17151					14	7	2	0	0	0	0.027866	1	1170	1170		7.6903	0	1	66465			33577	3822	23105	23153	38531	38531					0.14456702104644137
KNLGFGMGI	9	Unmodified	_KNLGFGMGI_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.7323913574219	2	468.752213	935.489873	-0.54811	-0.00025693	-4.1019	-0.0019228	-4.65	-0.0021797	468.7501907650517	27.564	1.4515	27.407	26.544	27.995	-0.15664					60	34	2	0	0	0	0.024412	1	1537	1537		31.955	0	1	116460			33578	1985	23106	23154	38532	38532					0.019547463709727708
KNLGRRWQ	8	Unmodified	_KNLGRRWQ_					0	0	0		ENST00000539643.1_1_17:79219996-79220904:-|nuORF	ENST00000539643.1_1_17:79219996-79220904:-|nuORF	ENST00000539643.1_1_17:79219996-79220904:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3267211914062	2	529.304324	1056.5941	0.0097197	5.1447E-06	2.5309	0.0013396	2.5406	0.0013448	529.3054608579528	65.729	0.68961	65.729	65.494	66.184	0					24	17	2	0	0	0	0.027866	1	7847	7847		42.474	19.432	1	514330			33579	16406	23107	23155	38533	38533					0.06806209242677141
KNLGTIAKSGT	11	Unmodified	_KNLGTIAKSGT_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.316763	1088.61897	-0.30292	-0.00016519	0.10816	5.8979E-05	-0.19476	-0.00010621	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.0429	2	10848	10848;10920		27.047	1.4733	1	17068000			33580	7589	23108	23156	38534;38535	38534					0.07820799534783873
KNLHYQTYPTQ	11	Unmodified	_KNLHYQTYPTQ_					0	0	0			REV__nc|ENSG00000180881|Q9BXY5|CAPS2	REV__nc|ENSG00000180881|Q9BXY5|CAPS2	MSMS	OPSCC_40_ClassI_Rep-2	5	464.9007263183594	3	464.901731	1391.68336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.373	1	20.177	19.677	20.677	-0.19577								0	0	0	1.1213	1	531	531		35.178	13.398	1		+		33581	36987	23109	23157	38536	38536					0.0031895462088868953
KNLIEFCIDI	10	Unmodified	_KNLIEFCIDI_					0	0	0			REV__TGM7|p.G244Afs*31|1|0.35|ENSG00000159495|chr15:43287414-43287414|C/-|frameshift_variant	REV__TGM7|p.G244Afs*31|1|0.35|ENSG00000159495|chr15:43287414-43287414|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.22198486328125	3	403.217892	1206.63185	0.31921	0.00012871	-2.0339	-0.00082012	-1.7147	-0.00069141	403.55032434380195	24.789	0.38045	24.574	24.296	24.677	-0.2151					10	8	2	0	0	0	0.03519	1	1106	1106		33.922	1.1711	1	149530	+		33582	25261	23110	23158	38537	38537					0.036794946026248
KNLKFHPLSLI	11	Unmodified	_KNLKFHPLSLI_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.88116455078125	3	437.271207	1308.79179	0.53459	0.00023376	4.0554	0.0017733	4.59	0.0020071	437.2728341088464	39.62	0.59325	39.62	39.357	39.951	0					50	16	4	0	0	0	0.02473	1	3447	3447		70.399	0	1	914610	+		33583	26976	23111	23159	38538	38538					0.1497479066199503
KNLKILIPWLL	11	Unmodified	_KNLKILIPWLL_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7611083984375	3	450.967236	1349.87988	-0.73538	-0.00033163	1.6075	0.00072492	0.87211	0.00039329	451.30224819317766	39.286	0.14342	39.31	39.242	39.385	0.023727					5	3	2	0	0	0	0.024828	1	3313	3313		3.026	0.33792	1	85729			33584	10139	23112	23160	38539	38539					0.2189341125260853
KNLKKGNI	8	Unmodified	_KNLKKGNI_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2589111328125	2	457.792727	913.5709	-0.53004	-0.00024265	1.0305	0.00047175	0.50044	0.0002291	457.79314614443166	28.439	0.33882	28.439	28.232	28.571	0					11	7	2	0	0	0	0.027866	1	1641	1641		53.351	10.955	1	55239			33585	1388	23113	23161	38540	38540					0.11065770405377862
KNLKKGNI	8	Unmodified	_KNLKKGNI_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.792727	913.5709	-0.35458	-0.00016232	0.033522	1.5346E-05	-0.32106	-0.00014698	457.79266098717693	28.367	0.3826	28.362	28.199	28.582	-0.0042019	-0.038326	-0.00047783	NaN	53.351	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71488			33586	1388	23113	23161							0.11065770405377862
KNLKKILW	8	Unmodified	_KNLKKILW_					0	0	0		ENST00000337859.10_1_2:187366125-187367264:+|nuORF	ENST00000337859.10_1_2:187366125-187367264:+|nuORF	ENST00000337859.10_1_2:187366125-187367264:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3238525390625	2	521.84222	1041.66989	-0.42548	-0.00022203	0.44915	0.00023439	0.023673	1.2354E-05	521.8422559632401	57.978	0.88549	57.978	57.758	58.643	0					50	23	3	0	0	0	0.027866	1	6641	6641		25.45	6.0902	1	1860400			33587	12429	23114	23162	38541	38541					0.15071793370270825
KNLKKQLL	8	Unmodified	_KNLKKQLL_					0	0	0		ENST00000342992.10_3_2:179428813-179429086:-|nuORF	ENST00000342992.10_3_2:179428813-179429086:-|nuORF	ENST00000342992.10_3_2:179428813-179429086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7808532714844	2	492.831852	983.649151	-0.5186	-0.00025558	1.1631	0.0005732	0.64447	0.00031761	492.8323281959909	78.048	0.24903	78.064	77.905	78.155	0.015907					7	5	2	0	0	0	0.027866	1	9580	9580		26.796	5.0938	1	42729			33588	12516	23115	23163	38542	38542					0.1566720299060762
KNLKSYDILD	10	Unmodified	_KNLKSYDILD_					0	0	0			REV__ENSG00000077522|ENST00000366578|ACTN2	REV__ENSG00000077522|ENST00000366578|ACTN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5548095703125	3	403.555561	1207.64485	0.29632	0.00011958	-2.2899	-0.00092408	-1.9935	-0.0008045	403.55460393591636	22.443	1.2102	22.258	21.667	22.877	-0.18539					58	25	4	0	0	0	0.88978	1	789	789		54.722	3.5297	1	1487400	+		33589	20594	23116	23164	38543	38543					0.04933648986366279
KNLLDTPVKTQ	11	Unmodified	_KNLLDTPVKTQ_					0	0	0		ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	419.5777587890625	3	419.578477	1255.7136	-0.59026	-0.00024766	-1.7442	-0.00073182	-2.3344	-0.00097948	419.5777836118063	21.369	1.2001	21.369	20.998	22.198	0					71	24	5	0	0	0	1.0013	1	656	656		36.528	7.3578	1	853400			33590	7859	23117	23165	38544	38544					0.09597313286076314
KNLLKATG	8	Unmodified	_KNLLKATG_					0	0	0			REV__LZTFL1|p.E148K|1|0.09|ENSG00000163818|chr3:45833064-45833064|C/T|missense_variant	REV__LZTFL1|p.E148K|1|0.09|ENSG00000163818|chr3:45833064-45833064|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5547180175781	2	422.766178	843.517802	2.1193	0.00089598	-2.0071	-0.00084852	0.11224	4.7452E-05	422.76539473906365	23.612	0.71888	23.421	23.209	23.928	-0.19117					22	16	3	0	0	0	0.027866	1	981	981		24.203	16.512	1	220240	+		33591	36344	23118	23166	38545	38545					0.08978392622702813
KNLLKATG	8	Unmodified	_KNLLKATG_					0	0	0			REV__LZTFL1|p.E148K|1|0.09|ENSG00000163818|chr3:45833064-45833064|C/T|missense_variant	REV__LZTFL1|p.E148K|1|0.09|ENSG00000163818|chr3:45833064-45833064|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.766178	843.517802	-0.12362	-5.2262E-05	0.48008	0.00020296	0.35647	0.0001507	422.7664265403119	23.594	0.49289	23.414	23.201	23.694	-0.17989	-0.034663	0.00051912	NaN	24.203	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188940	+		33592	36344	23118	23166							0.08978392622702813
KNLLKQTGE	9	Unmodified	_KNLLKQTGE_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.8179931640625	2	515.798206	1029.58186	0.014712	7.5882E-06	-2.2298	-0.0011501	-2.2151	-0.0011425	516.297210690714	67.809	0.45297	67.57	67.334	67.787	-0.23814					16	10	2	0	0	0	0.024541	1	7776	7776		16.473	0	1	119430	+		33593	22566	23119	23167	38546	38546					0.06825127989009161
KNLLKQTGE	9	Unmodified	_KNLLKQTGE_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.798206	1029.58186	0.17129	8.8353E-05	-2.4458	-0.0012615	-2.2745	-0.0011732	516.2969500126304	67.789	0.36732	67.555	67.429	67.797	-0.23376	-0.0078448	-0.00010764	NaN	10.866	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103940	+		33594	22566	23119	23167							0.06825127989009161
KNLLLLGKT	9	Unmodified	_KNLLLLGKT_					0	0	0		ENST00000517404.1_1_8:87486539-87487267:-|nuORF;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1	ENST00000517404.1_1_8:87486539-87487267:-|nuORF	ENST00000517404.1_1_8:87486539-87487267:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2879638671875	2	500.331685	998.648816	-0.33381	-0.00016701	-0.25767	-0.00012892	-0.59148	-0.00029593	500.33141690270173	24.102	0.25862	24.102	23.951	24.209	0					9	5	2	0	0	0	0.024457	1	1003	1003		21.96	3.6355	1	41505			33595	8654	23120	23168	38547	38547					0.1494378327075765
KNLLLTLTV	9	Unmodified	_KNLLLTLTV_					0	0	0		nc|ENSG00000110436|P43004-3|SLC1A2;nc|ENSG00000110436|P43004-2|SLC1A2;ENSG00000110436|ENST00000278379|SLC1A2	nc|ENSG00000110436|P43004-3|SLC1A2	nc|ENSG00000110436|P43004-3|SLC1A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.82708740234375	2	507.831517	1013.64848	-1.1496	-0.00058381	0.76515	0.00038857	-0.38447	-0.00019524	507.83185878367493	41.059	0.75884	40.829	40.554	41.313	-0.23029					31	19	2	0	0	0	0.024477	1	3544	3544		14.865	0	1	1025800			33596	3044	23121	23169	38548	38548					0.1422036355089631
KNLLNAFAI	9	Unmodified	_KNLLNAFAI_					0	0	0			REV__ENSG00000108239|ENST00000225235|TBC1D12	REV__ENSG00000108239|ENST00000225235|TBC1D12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2675476074219	2	502.300384	1002.58622	0.75938	0.00038144	-0.93991	-0.00047212	-0.18052	-9.0677E-05	502.29953079367476	71.343	0.68764	71.054	70.546	71.234	-0.28858					24	16	2	0	0	0	0.024381	1	8571	8571		29.15	11.785	1	607870	+		33597	21718	23122	23170	38549	38549					0.08502637202559526
KNLLSDKKL	9	Unmodified	_KNLLSDKKL_					0	0	0		ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7637329101562	2	529.832049	1057.64954	0.2889	0.00015307	3.1949	0.0016928	3.4838	0.0018458	529.8336925472261	82.069	0.60025	81.84	81.564	82.165	-0.2289					30	13	3	0	0	0	0.024418	1	9850	9850		37.812	3.639	1	369060			33598	9009	23123	23171	38550	38550					0.12302577919808755
KNLNKLQP	8	Unmodified	_KNLNKLQP_					0	0	0			REV__ENST00000488487.2_1_6:3127447-3138314:+|nuORF	REV__ENST00000488487.2_1_6:3127447-3138314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26666259765625	2	477.790184	953.565815	-0.3466	-0.0001656	1.9559	0.00093453	1.6093	0.00076893	477.79030476724	48.54	0.74714	48.607	48.378	49.125	0.066795					23	20	2	0	0	0	0.027866	1	4976	4976		29.15	0	1	97847	+		33599	23745	23124	23172	38551	38551					0.08717466542748298
KNLPEDKL	8	Unmodified	_KNLPEDKL_					0	0	0		nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2	nc|ENSG00000138669|Q13237-2|PRKG2	nc|ENSG00000138669|Q13237-2|PRKG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7745056152344	2	478.7742	955.533846	-0.38003	-0.00018195	0.34812	0.00016667	-0.031903	-1.5274E-05	478.7743026870801	31.337	1.6412	31.152	30.702	32.343	-0.18503					91	39	4	0	0	0	0.5947	1	2049	2049		76.774	2.5191	1	9351300			33600	5264	23125	23173	38552	38552					0.054300540689382615
KNLPPSLSL	9	Unmodified	_KNLPPSLSL_					0	0	0			REV__nc|ENSG00000128581|Q9H7X7-3|IFT22	REV__nc|ENSG00000128581|Q9H7X7-3|IFT22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.2557678222656	2	484.792392	967.570232	-0.056438	-2.7361E-05	-2.3952	-0.0011612	-2.4516	-0.0011885	484.7879775259396	45.751	1.641	45.654	44.32	45.961	-0.096649					69	44	3	0	0	0	0.02435	1	4412	4412		51.335	22.186	1	296670	+		33601	22993	23126	23174	38553	38553					0.08514930965668555
KNLQEPGKLRL	11	Unmodified	_KNLQEPGKLRL_					0	0	0			REV__nc|ENSG00000100433|P57789|KCNK10	REV__nc|ENSG00000100433|P57789|KCNK10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	648.391845703125	2	648.393336	1294.77212	-0.46644	-0.00030244	-0.36851	-0.00023894	-0.83495	-0.00054138	648.3929857733464	105.5	0.73857	105.37	104.95	105.69	-0.13099					49	24	4	0	0	0	0.93459	1	13163	13163		49.536	14.384	1	1002700	+		33602	21119	23127	23175	38554	38554					0.13652414651210165
KNLQPHPQP	9	Unmodified	_KNLQPHPQP_					0	0	0			REV__ENSG00000157152|ENST00000621198|SYN2	REV__ENSG00000157152|ENST00000621198|SYN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7637329101562	2	529.790715	1057.56688	0.25576	0.0001355	-2.9577	-0.001567	-2.7019	-0.0014315	529.7895070442094	81.884	0.42647	81.655	81.564	81.991	-0.2289					12	9	2	0	0	0	0.024381	1	9850	9850		37.159	5.6293	1	48391	+		33603	25116	23128	23176	38555	38555					0.04039680911660071
KNLQPHPQP	9	Unmodified	_KNLQPHPQP_					0	0	0			REV__ENSG00000157152|ENST00000621198|SYN2	REV__ENSG00000157152|ENST00000621198|SYN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.790715	1057.56688	-0.64431	-0.00034135	-8.6018	-0.0045572	-9.2461	-0.0048985	529.7855913708878	81.603	0.20522	81.627	81.493	81.698	0.023903	-0.13692	-0.0051759	NaN	21.96	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28021	+		33604	25116	23128	23176							0.04039680911660071
KNLRSHGITII	11	Unmodified	_KNLRSHGITII_					0	0	0			REV__ENST00000470910.5_1_3:39142410-39149053:-|nuORF	REV__ENST00000470910.5_1_3:39142410-39149053:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	626.38037109375	2	626.380229	1250.7459	0.42062	0.00026347	-1.3282	-0.00083195	-0.90756	-0.00056848	626.3792952337366	104.3	0.95153	104.3	103.98	104.93	0.0031357					73	26	4	0	0	0	1.0371	1	13382	13382		19.104	0	1	2383900	+		33605	22140	23129	23177	38556	38556					0.13056145479754377
KNLSSSWTF	9	Unmodified	_KNLSSSWTF_					0	0	0			REV__ENST00000380882.5_4:85656-87337:+|nuORF	REV__ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3165283203125	2	535.269281	1068.52401	-1.0821	-0.0005792	1.7	0.00090996	0.61793	0.00033076	535.2706984068957	44.289	0.64637	44.184	43.741	44.387	-0.10468					26	17	2	0	0	0	0.024319	1	4086	4086		47.657	0	1	229110	+		33606	29170	23130	23178	38557	38557					-0.00751133936455517
KNLSVWKEE	9	Unmodified	_KNLSVWKEE_					0	0	0		ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	ENSG00000213160|ENST00000392647|KLHL23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.7808227539062	2	566.803488	1131.59242	0.33795	0.00019155	1.6464	0.00093318	1.9843	0.0011247	566.804285075981	57.028	0.50696	56.826	56.557	57.064	-0.20209					14	13	2	0	0	0	0.024447	1	6234	6234		40.778	7.9657	1	95488			33607	10492	23131	23179	38558	38558					0.031891106434159155
KNLTFIIIL	9	Unmodified	_KNLTFIIIL_					0	0	0		ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7968139648438	2	537.84971	1073.68487	0.35397	0.00019038	-1.9549	-0.0010515	-1.6009	-0.00086107	537.848426640336	78.146	0.24979	77.954	77.806	78.056	-0.1921					9	5	2	0	0	0	0.024323	1	9623	9623		35.618	0	1	111450			33608	5626	23132	23180	38559	38559					0.1509724044763061
KNLTFRRRQT	10	Unmodified	_KNLTFRRRQT_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.2437744140625	3	440.593343	1318.7582	1.2226	0.00053867	1.6944	0.00074653	2.917	0.0012852	440.59400995536123	25.186	0.46486	25.014	24.777	25.241	-0.17151					20	10	2	0	0	0	0.03519	1	1109	1109		14.694	1.1857	1	151470			33609	7358	23133	23181	38560	38560					0.1115718194278088
KNLVFSDGY	9	Unmodified	_KNLVFSDGY_					0	0	0		nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3238525390625	2	521.763832	1041.51311	-0.15146	-7.9027E-05	-1.1444	-0.00059709	-1.2958	-0.00067612	521.7638149312609	58.412	1.3135	58.412	57.982	59.295	0					68	35	3	0	0	0	0.024506	1	6641	6641		30.504	13.799	1	477210			33610	3652	23134	23182	38561	38561					-0.00598536310712916
KNLVFSDGY	9	Unmodified	_KNLVFSDGY_					0	0	0		nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3240356445312	2	521.763832	1041.51311	-0.02034	-1.0613E-05	-1.4191	-0.00074043	-1.4394	-0.00075105	521.7638526004228	58.234	1.3033	58.326	57.979	59.283	0.091217					70	35	3	0	0	0	0.024535	1	6545	6545		25.45	1.2474	1	345860			33611	3652	23134	23182	38562	38562					-0.00598536310712916
KNLVFSSSA	9	Unmodified	_KNLVFSSSA_					0	0	0		nc|ENSG00000117308|Q14376-2|GALE;ENSG00000117308|ENST00000617979|GALE;ENST00000459934.5_1_1:24122658-24127224:-|nuORF	nc|ENSG00000117308|Q14376-2|GALE	nc|ENSG00000117308|Q14376-2|GALE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.80743408203125	2	476.758549	951.502546	0.29433	0.00014032	-2.3969	-0.0011428	-2.1026	-0.0010024	476.75802809469684	102.63	0.47978	102.46	102.24	102.72	-0.1712					18	10	2	0	0	0	0.024262	1	12750	12750		38.806	0	1	39968			33612	3620	23135	23183	38563	38563					0.0248548103485291
KNLWVKID	8	Unmodified	_KNLWVKID_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.801025390625	2	508.300384	1014.58622	-0.034944	-1.7762E-05	3.1468	0.0015995	3.1118	0.0015818	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.42912	1	6101	6101		93.195	24.409	1	8817200			33613	6502	23136	23184	38564	38564					0.07950637202554844
KNLWVKID	8	Unmodified	_KNLWVKID_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.8017272949219	2	508.300384	1014.58622	-0.35052	-0.00017817	3.5065	0.0017824	3.156	0.0016042	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.53523	1	6086	6086		82.305	6.1353	1	8370900			33614	6502	23136	23184	38565	38565					0.07950637202554844
KNLYIGFA	8	Unmodified	_KNLYIGFA_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2304992675781	2	463.260728	924.506903	-0.14384	-6.6636E-05	-3.9076	-0.0018103	-4.0515	-0.0018769	463.25861212349093	36.668	0.76735	36.606	36.398	37.165	-0.061935					39	19	3	0	0	0	0.027866	1	2984	2984		21.702	0.7554	1	543430	+		33615	23785	23137	23185	38566	38566					0.04162990248426013
KNMARYRD	8	Unmodified	_KNMARYRD_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2781372070312	2	527.26655	1052.51855	0.31345	0.00016527	2.6691	0.0014073	2.9825	0.0015726	527.2678389611428	84.448	0.63506	84.245	84.081	84.716	-0.20329					24	14	2	0	0	0	0.027866	1	10241	10241		31.955	6.5047	1	106910			33616	11057	23138	23186	38567	38567					-0.005611359998965781
KNMEKKIDK	9	Unmodified	_KNMEKKIDK_					0	0	0		ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.8117065429688	2	567.320991	1132.62743	0.45909	0.00026045	2.6357	0.0014953	3.0948	0.0017557	567.3222274553847	71.523	0.6149	71.235	70.96	71.575	-0.28857					21	14	2	0	0	0	0.024484	1	8621	8621		23.523	0	1	331260			33617	14060	23139	23187	38568	38568					0.06642030179705216
KNMKFWQY	8	Unmodified	_KNMKFWQY_					0	0	0			REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.3013916015625	2	572.784044	1143.55354	-0.31022	-0.00017769	-2.3389	-0.0013397	-2.6491	-0.0015174	572.7850482302133	67.304	1.4538	67.08	66.714	68.168	-0.22374					96	35	5	0	0	0	0.027866	1	7855	7855		25.45	0.93098	1	665260	+		33618	36940	23140	23188	38569	38569					-0.012498931919253664
KNMKHTLP	8	Unmodified	_KNMKHTLP_					0	0	0			REV__nc|ENSG815|Q902F8|ERVK-8_env;REV__nc|ENSG840|P61565|ERVK-21_env	REV__nc|ENSG840|P61565|ERVK-21_env	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2872619628906	2	484.770937	967.527321	-0.47699	-0.00023123	-2.7975	-0.0013561	-3.2744	-0.0015874	484.76917617579664	23.205	0.60272	23.205	22.757	23.36	0					16	13	2	0	0	0	0.027866	1	878	878		33.516	9.3128	1	33922	+		33619	37248;37251	23141	23189	38570	38570					0.04225837636590768
KNMQAQSL	8	Unmodified	_KNMQAQSL_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.24908447265625	2	460.236927	918.459301	-0.093302	-4.2941E-05	0.20242	9.316E-05	0.10911	5.0219E-05	460.23684869963733	43.282	0.53596	43.17	42.854	43.39	-0.11253					30	14	3	0	0	0	0.027866	1	3908	3908		90.777	19.481	1	784730	+		33620	27219	23142	23190	38571	38571					-0.0031903201407885717
KNMQAQSL	8	Unmodified	_KNMQAQSL_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	460.236927	918.459301	-0.57423	-0.00026428	0.41087	0.0001891	-0.16336	-7.5186E-05	460.23699205306855	43.394	0.57314	43.156	42.917	43.49	-0.23736	-0.0021731	5.7438E-05	NaN	90.777	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758670	+		33621	27219	23142	23190							-0.0031903201407885717
KNMQAQSL	8	Unmodified	_KNMQAQSL_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	460.236927	918.459301	-0.7112	-0.00032732	0.38044	0.00017509	-0.33076	-0.00015223	460.2370002320673	43.375	0.6106	43.149	42.873	43.484	-0.22597	-0.009253	2.9427E-05	NaN	90.777	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	766930	+		33622	27219	23142	23190							-0.0031903201407885717
KNNCMTTNQT	10	Carbamidomethyl (C)	_KNNC(Carbamidomethyl (C))MTTNQT_	KNNC(1)MTTNQT		KNNC(53)MTTNQT		0	1	0		ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.5112609863281	3	404.509628	1210.50706	0.99008	0.0004005	2.1457	0.00086794	3.1357	0.0012684	404.5106603150283	32.072	1.5129	31.88	31.472	32.985	-0.19261					101	35	5	0	0	0	0.91448	1	2205	2205		53.089	6.6322	1	5650200			33623	10288	23143	23191	38572	38572	144				-0.08977745876222798
KNNDMGGVAY	10	Unmodified	_KNNDMGGVAY_					0	0	0			REV__ENSG00000150361|ENST00000377844|KLHL1	REV__ENSG00000150361|ENST00000377844|KLHL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.75244140625	2	534.742573	1067.47059	-0.54792	-0.000293	1.9307	0.0010324	1.3828	0.00073945	534.743306931403	40.232	0.18609	40.007	39.928	40.114	-0.225					8	4	2	0	0	0	0.03519	1	3457	3457		54.776	0	1	121680	+		33624	24715	23144	23192	38573	38573					-0.06044254710604946
KNNELQDI	8	Unmodified	_KNNELQDI_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.23046875	2	487.251089	972.487624	-0.80075	-0.00039016	0.69794	0.00034007	-0.10281	-5.0092E-05	487.25136435593953	31.322	0.66606	31.322	31.003	31.669	0					26	15	2	0	0	0	0.027866	1	2120	2120		19.997	0	1	918510	+		33625	23480	23145	23193	38574	38574					0.0002798916684696451
KNNFAKVK	8	Unmodified	_KNNFAKVK_					0	0	0			REV__nc|ENSG00000018236|Q12860-2|CNTN1	REV__nc|ENSG00000018236|Q12860-2|CNTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.24481201171875	2	474.784902	947.55525	0.84196	0.00039975	-1.4064	-0.00066771	-0.5644	-0.00026797	474.78420293976876	46.076	0.83566	46.076	45.679	46.515	0					40	23	3	0	0	0	0.027866	1	4462	4462		38.806	17.859	1	331360	+		33626	19978	23146	23194	38575	38575					0.07937483888326824
KNNIQLKWRND	11	Unmodified	_KNNIQLKWRND_					0	0	0		ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.802734375	3	476.928392	1427.76335	-1.2437	-0.00059316	0.25695	0.00012255	-0.98677	-0.00047062	476.9285043699043	33.718	0.23283	33.543	33.469	33.701	-0.17557					8	5	2	0	0	0	0.024809	1	2400	2400		22.562	5.3948	1	42133			33627	4792	23147	23195	38576	38576					0.06657441014749566
KNNIRIADF	9	Unmodified	_KNNIRIADF_					0	0	0		ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1;ENST00000531078.1_1_11:1463684-1466535:+|nuORF;nc|ENSG00000160469|Q8TDC3-3|BRSK1;nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;BRSK1|p.G176C|1|0.41|ENSG00000160469|chr19:55294084-55294084|G/T|missense_variant	ENSG00000160469|ENST00000309383|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8059692382812	2	545.803823	1089.59309	-0.40919	-0.00022334	4.0091	0.0021882	3.5999	0.0019648	545.8059104926652	72.971	1.6573	72.694	71.947	73.605	-0.2769					87	39	3	0	0	0	0.39228	1	8552	8552		66.429	5.4573	1	2256600			33628	6818	23148	23196	38577	38577					0.05187950083131909
KNNKAKLY	8	Unmodified	_KNNKAKLY_					0	0	0		ENSG00000164744|ENST00000297325|SUN3;nc|ENSG00000164744|Q8TAQ9-2|SUN3;nc|ENSG00000164744|Q8TAQ9-3|SUN3	ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.791259765625	2	489.790184	977.565815	-0.030587	-1.4981E-05	0.20838	0.00010206	0.17779	8.708E-05	489.7901537153431	22.4	0.74246	22.211	21.863	22.606	-0.18894					35	15	3	0	0	0	0.65272	1	793	793		71.378	0.082209	1	683540			33629	7316	23149	23197	38578	38578					0.07613466542738934
KNNKAKLY	8	Unmodified	_KNNKAKLY_					0	0	0		ENSG00000164744|ENST00000297325|SUN3;nc|ENSG00000164744|Q8TAQ9-2|SUN3;nc|ENSG00000164744|Q8TAQ9-3|SUN3	ENSG00000164744|ENST00000297325|SUN3	ENSG00000164744|ENST00000297325|SUN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.7911682128906	2	489.790184	977.565815	-0.49132	-0.00024064	0.58623	0.00028713	0.09491	4.6486E-05	489.79032347851313	22.52	0.69235	22.334	22	22.692	-0.18539					36	14	4	0	0	0	0.91239	1	793	793		50.025	0.58299	1	578390			33630	7316	23149	23197	38579	38579					0.07613466542738934
KNNKLFLT	8	Unmodified	_KNNKLFLT_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;ENST00000485627.1_1_20:44520959-44522735:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2923889160156	2	489.292559	976.570566	0.3723	0.00018216	0.4365	0.00021358	0.80881	0.00039574	489.29267255679713	66.165	0.55888	66.165	65.875	66.434	0					44	17	4	0	0	0	0.43637	1	7871	7871		92.191	12.74	1	7480900			33631	1276	23150	23198	38580	38580					0.08134350685497793
KNNKLSLTLHK	11	Unmodified	_KNNKLSLTLHK_					0	0	0		ENSG00000205592|ENST00000454784|MUC19;nc|ENSG00000205592|Q7Z5P9-2|MUC19	ENSG00000205592|ENST00000454784|MUC19	ENSG00000205592|ENST00000454784|MUC19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.5977783203125	3	432.597983	1294.77212	-0.63305	-0.00027386	-0.074467	-3.2214E-05	-0.70752	-0.00030607	432.5978350493493	105.5	0.80409	105.37	104.9	105.71	-0.13099					65	27	4	0	0	0	1.0429	1	13155	13155		24.276	0	1	1683800			33632	10435	23151	23199	38581	38581					0.13652414651210165
KNNKTPTI	8	Unmodified	_KNNKTPTI_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H;REV__ENST00000600818.1_1_19:39966660-39967036:+|nuORF	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.263916015625	2	458.266542	914.51853	0.51245	0.00023484	-1.2307	-0.000564	-0.71827	-0.00032916	458.2656182543297	41.83	0.62633	41.83	41.36	41.987	0					28	17	2	0	0	0	0.027866	1	3815	3815		26.693	6.6961	1	225530	+		33633	28151;35850	23152	23200	38582	38582					0.05785187271760606
KNNKVPSR	8	Unmodified	_KNNKVPSR_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4;ENST00000494187.1_1_7:30821643-30825836:+|nuORF	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2513732910156	2	471.777608	941.540663	-0.22932	-0.00010819	-3.8971	-0.0018386	-4.1264	-0.0019468	471.7757575815238	27.396	1.5774	27.153	26.061	27.638	-0.24217					63	38	2	0	0	0	0.027866	1	1562	1562		51.335	2.1247	1	109870			33634	2763	23153	23201	38583	38583					0.06755411740186901
KNNPPLKSR	9	Unmodified	_KNNPPLKSR_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11;OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3117065429688	2	527.311815	1052.60908	1.2084	0.00063722	-1.4211	-0.00074937	-0.21268	-0.00011215	527.3109520512323	20.47	0.83702	20.539	20.217	21.054	0.068901					41	16	4	0	0	0	0.91321	1	492	492		31.53	1.0262	1	682740			33635	5783	23154	23202	38584	38584					0.08487656320039605
KNNVPTDL	8	Unmodified	_KNNVPTDL_					0	0	0		chr5:136060845-136061500|208|38.83|0.82|5.57|+|0|None,TGFBI|2	chr5:136060845-136061500|208|38.83|0.82|5.57|+|0|None,TGFBI|2	chr5:136060845-136061500|208|38.83|0.82|5.57|+|0|None,TGFBI|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2818908691406	2	450.742899	899.471246	-0.59783	-0.00026947	-0.25933	-0.00011689	-0.85716	-0.00038636	450.7438679156079	50.844	0.40273	50.928	50.748	51.151	0.084709					13	10	2	0	0	0	0.027866	1	5321	5321		31.955	0	1	63538			33636	399	23155	23203	38585	38585					0.017489080007635494
KNNWMAALISL	11	Unmodified	_KNNWMAALISL_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2;ENSG00000115904|ENST00000402219|SOS1	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7396545410156	3	420.897152	1259.66963	-0.34107	-0.00014356	2.0025	0.00084283	1.6614	0.00069927	421.23287360837816	23.011	0.18528	23.011	22.894	23.079	0					5	3	2	0	0	0	0.024762	1	861	861		8.0344	0.35495	1	4815.1			33637	2208	23156	23204	38586	38586					0.05018005588112828
KNNWTSAVT	9	Unmodified	_KNNWTSAVT_					0	0	0			REV__ENST00000506184.6_1_5:56471945-56472026:+|nuORF	REV__ENST00000506184.6_1_5:56471945-56472026:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7826232910156	2	510.759081	1019.50361	0.054928	2.8055E-05	4.3855	0.00224	4.4405	0.002268	510.76087331583375	88.808	0.5473	88.67	88.44	88.987	-0.13744					21	12	2	0	0	0	0.024495	1	10838	10838		34.173	3.6689	1	248020	+		33638	34021	23157	23205	38587	38587					-0.00536304596255377
KNPEAPMI	8	Unmodified	_KNPEAPMI_					0	0	0		CFAP69|p.Q321K|1|0.1|ENSG00000105792|chr7:90274087-90274087|C/A|missense_variant	CFAP69|p.Q321K|1|0.1|ENSG00000105792|chr7:90274087-90274087|C/A|missense_variant	CFAP69|p.Q321K|1|0.1|ENSG00000105792|chr7:90274087-90274087|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.239990234375	2	450.236396	898.458238	-0.1957	-8.8112E-05	3.5306	0.0015896	3.3349	0.0015015	450.2379955320939	23.887	1.6075	23.887	23.566	25.173	0					84	36	4	0	0	0	0.6536	1	1029	1029		71.296	1.6681	1	8290200			33639	260	23158	23206	38588	38588					0.004947536170220701
KNPEQVSSSW	10	Unmodified	_KNPEQVSSSW_					0	0	0		ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENST00000447721.6_1_12:57881873-57905922:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.2818603515625	2	581.280377	1160.5462	-0.65918	-0.00038317	0.22016	0.00012797	-0.43903	-0.0002552	581.2805236197219	52.116	0.75795	51.997	51.682	52.44	-0.11875					51	19	4	0	0	0	0.50517	1	5406	5406		87.696	0	1	2454900			33640	14472	23159	23207	38589	38589					-0.027649542586686948
KNPGVWLN	8	Unmodified	_KNPGVWLN_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2794189453125	2	464.255977	926.497401	0.12823	5.9532E-05	0.41694	0.00019357	0.54517	0.0002531	464.25584956018326	52.043	0.55507	52.135	51.93	52.486	0.091938					21	13	2	0	0	0	0.027866	1	5462	5462		17.365	5.1581	1	133940			33641	1457	23160	23208	38590	38590					0.03121221962896925
KNPLFVRI	8	Unmodified	_KNPLFVRI_					0	0	0			REV__nc|ENSG00000132155|P04049-2|RAF1	REV__nc|ENSG00000132155|P04049-2|RAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2786560058594	2	493.810919	985.607286	0.19743	9.7492E-05	-1.8424	-0.00090978	-1.6449	-0.00081229	493.81014261451685	89.176	0.75533	89.038	88.777	89.532	-0.13761					30	17	2	0	0	0	0.027866	1	10942	10942		12.207	0	1	76052	+		33642	23256	23161	23209	38591	38591					0.11390647302073376
KNPLLDLTA	9	Unmodified	_KNPLLDLTA_					0	0	0		ENST00000607664.1_1_11:18363085-18363274:+|nuORF;nc|ENSG00000110768|P32780-2|GTF2H1;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1	ENST00000607664.1_1_11:18363085-18363274:+|nuORF	ENST00000607664.1_1_11:18363085-18363274:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.269287109375	2	492.78985	983.565146	-1.0353	-0.0005102	-1.4415	-0.00071036	-2.4768	-0.0012206	492.78925763303226	25.817	0.33689	25.588	25.432	25.769	-0.22877					12	7	2	0	0	0	0.024477	1	1250	1250		35.618	15.622	1	48591			33643	3062	23162	23210	38592	38592					0.07270627103036986
KNPTQKNI	8	Unmodified	_KNPTQKNI_					0	0	0			REV__nc|ENSG00000285130|Q16595-2|FXN	REV__nc|ENSG00000285130|Q16595-2|FXN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7529602050781	2	471.771991	941.529429	0.026685	1.2589E-05	-0.46008	-0.00021705	-0.4334	-0.00020446	471.7717095935045	35.662	0.9868	35.706	35.05	36.037	0.04406					44	25	2	0	0	0	0.027866	1	2726	2726		10.866	0	1	266940	+		33644	25834	23163	23211	38593	38593					0.056325896460293734
KNPTRHGISLW	11	Unmodified	_KNPTRHGISLW_					0	0	0		ENST00000330292.4_17:80207349-80207784:+|nuORF	ENST00000330292.4_17:80207349-80207784:+|nuORF	ENST00000330292.4_17:80207349-80207784:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.5266418457031	3	436.910561	1307.70985	0.34658	0.00015143	-0.10636	-4.647E-05	0.24023	0.00010496	436.9103340709663	53.255	0.34671	52.997	52.803	53.15	-0.25838					14	8	2	0	0	0	0.024759	1	5550	5550		29.551	9.5203	1	71539			33645	12327	23164	23212	38594	38594					0.06830688302898125
KNPTRHGISLW	11	Unmodified	_KNPTRHGISLW_					0	0	0		ENST00000330292.4_17:80207349-80207784:+|nuORF	ENST00000330292.4_17:80207349-80207784:+|nuORF	ENST00000330292.4_17:80207349-80207784:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	436.910561	1307.70985	0.19831	8.6644E-05	-0.20371	-8.9001E-05	-0.0053963	-2.3577E-06	436.90968157418814	53.073	0.31374	52.946	52.713	53.027	-0.12705	-0.025209	-9.0199E-05	NaN	23.378	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80766			33646	12327	23164	23212							0.06830688302898125
KNPVEKEPL	9	Unmodified	_KNPVEKEPL_					0	0	0			REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.3009643554688	2	527.300581	1052.58661	0.095016	5.0102E-05	-0.60207	-0.00031747	-0.50705	-0.00026737	527.3001977199482	22.963	0.65362	22.761	22.499	23.153	-0.20193					44	13	4	0	0	0	0.80003	1	890	890		39.253	1.4413	1	626520	+		33647	37745	23165	23213	38595	38595					0.062420121317472876
KNPVLLKIL	9	Unmodified	_KNPVLLKIL_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3052978515625	2	519.357702	1036.70085	-0.3199	-0.00016614	0.35407	0.00018389	0.034166	1.7744E-05	519.3578636571256	93.673	0.62657	93.673	93.261	93.888	0					26	14	2	0	0	0	0.02435	1	11884	11884		51.335	23.081	1	100470			33648	3602;37837	23166	23214	38596	38596					0.1839694668451557
KNPVLLKIL	9	Unmodified	_KNPVLLKIL_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3051147460938	2	519.357702	1036.70085	-0.56156	-0.00029165	0.62748	0.00032589	0.065921	3.4237E-05	519.3578937614699	93.606	0.66199	93.602	93.326	93.988	-0.0042038					26	15	2	0	0	0	0.023181	1	11879	11879		42.396	14.514	1	134270			33649	3602;37837	23166	23214	38597	38597					0.1839694668451557
KNPVLLKIL	9	Unmodified	_KNPVLLKIL_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3049926757812	2	519.357702	1036.70085	-0.7728	-0.00040136	0.84966	0.00044128	0.076862	3.9919E-05	519.3580651623608	93.653	0.66489	93.659	93.265	93.93	0.0059814					26	15	2	0	0	0	0.024021	1	11824	11824		49.442	10.189	1	91927			33650	3602;37837	23166	23214	38598	38598					0.1839694668451557
KNQDRKLW	8	Unmodified	_KNQDRKLW_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.8216552734375	2	544.30399	1086.59343	0.40084	0.00021818	0.72985	0.00039726	1.1307	0.00061544	544.3041735617154	98.907	0.3882	98.77	98.546	98.935	-0.13625					12	8	2	0	0	0	0.027866	1	12237	12237		38.806	20.544	1	57859			33651	3560	23167	23215	38599	38599					0.053593698029771986
KNQFPIDI	8	Unmodified	_KNQFPIDI_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7905578613281	2	487.768917	973.523281	0.72743	0.00035482	-0.72121	-0.00035179	0.006216	3.032E-06	487.768566819202	84.271	0.56308	84.113	83.801	84.364	-0.15868					20	12	2	0	0	0	0.027866	1	10167	10167		29.15	6.1071	1	45218	+		33652	23125	23168	23216	38600	38600					0.03546071414530161
KNQGGFAIVT	10	Unmodified	_KNQGGFAIVT_					0	0	0			REV__nc|ENSG00000005471|P21439-3|ABCB4	REV__nc|ENSG00000005471|P21439-3|ABCB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2511596679688	2	517.785099	1033.55564	-0.12912	-6.6856E-05	1.1973	0.00061994	1.0682	0.00055309	517.7853564213183	46.642	0.45644	46.546	46.368	46.825	-0.096653					24	12	3	0	0	0	0.03519	1	4518	4518		34.173	6.2903	1	515390	+		33653	19807	23169	23217	38601	38601					0.04020858817534645
KNQGKVLI	8	Unmodified	_KNQGKVLI_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.24786376953125	2	450.287277	898.560001	-0.60289	-0.00027147	-0.26868	-0.00012098	-0.87156	-0.00039245	450.28714577505923	40.128	0.65281	39.898	39.467	40.12	-0.23021					21	16	2	0	0	0	0.027866	1	3384	3384		50.025	0	1	180080			33654	1051	23170	23218	38602	38602					0.10666368031081674
KNQGYAFGSN	10	Unmodified	_KNQGYAFGSN_					0	0	0			REV__ENSG00000110713|ENST00000324932|NUP98	REV__ENSG00000110713|ENST00000324932|NUP98	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7965698242188	2	543.254163	1084.49377	-0.13063	-7.0964E-05	-3.6427	-0.0019789	-3.7733	-0.0020499	543.2507612048905	71.63	1.3604	71.355	70.967	72.327	-0.2751					67	32	3	0	0	0	0.03519	1	8453	8453		51.193	7.5666	1	583020	+		33655	21869	23171	23219	38603	38603					-0.04509492601596321
KNQGYYDY	8	Unmodified	_KNQGYYDY_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7697143554688	2	525.729989	1049.44543	-1.2332	-0.00064831	-3.0353	-0.0015958	-4.2685	-0.0022441	525.7282538406181	33.831	0.46732	33.656	33.391	33.859	-0.17557					18	11	2	0	0	0	0.027866	1	2452	2452		29.15	16.943	1	159360			33656	2737	23172	23220	38604	38604					-0.07731986241515187
KNQHKSSRQT	10	Unmodified	_KNQHKSSRQT_					0	0	0			REV__ZNF227|p.F171Sfs*16|1|0.08|ENSG00000131115|chr19:44234941-44234942|-/CTTA|frameshift_variant	REV__ZNF227|p.F171Sfs*16|1|0.08|ENSG00000131115|chr19:44234941-44234942|-/CTTA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	608.311767578125	2	607.323442	1212.63233	-0.32582	-0.00019788	-2.1094	-0.0012811	-2.4353	-0.001479	607.3218110219595	67.672	0.49886	67.438	67.217	67.716	-0.23376					17	11	2	0	0	0	0.03519	1	7806	7806		9.1829	0	1	89184	+		33657	23189	23173	23221	38605	38605					0.03452050366695403
KNQHKVIQCL	10	Unmodified	_KNQHKVIQCL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5924987792969	3	404.229014	1209.66521	-0.91004	-0.00036787	-1.2418	-0.00050195	-2.1518	-0.00086982	404.2287803098844	38.205	0.60914	37.986	37.644	38.253	-0.21848					20	17	2	0	0	0	0.03519	1	3121	3121		28.081	7.2443	1	134760			33658	5364	23174	23222	38606	38606					0.06876541165206618
KNQHTKIHK	9	Unmodified	_KNQHTKIHK_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3294677734375	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.87448	1	11232	11232		34.173	3.8548	1	18337000	+		33659	26716	23175	23223	38607	38607					0.08550747585650242
KNQINFWR	8	Unmodified	_KNQINFWR_					0	0	0		ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.2821044921875	2	553.298707	1104.58286	0.32067	0.00017742	1.613	0.00089247	1.9337	0.0010699	553.2993007429225	94.324	2.226	94.201	92.587	94.813	-0.12215					76	51	4	0	0	0	0.027866	1	11524	11524		19.36	10.177	1	600760			33660	7905	23176	23224	38608	38608					0.03475387148569098
KNQKFLHAI	9	Unmodified	_KNQKFLHAI_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.7740478515625	2	549.824558	1097.63456	0.51672	0.00028411	2.8478	0.0015658	3.3645	0.0018499	549.8261901379012	55.409	0.32004	55.409	55.216	55.536	0					12	8	2	0	0	0	0.024436	1	6109	6109		38.806	7.2763	1	170230	+		33661	20903	23177	23225	38609	38609					0.08965130842443614
KNQKFLHAI	9	Unmodified	_KNQKFLHAI_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.7743530273438	2	549.824558	1097.63456	-0.58472	-0.0003215	3.1071	0.0017084	2.5224	0.0013869	549.8261841695424	55.479	0.39434	55.323	55.16	55.554	-0.15602					14	10	2	0	0	0	0.024412	1	6095	6095		31.955	8.9124	1	138140	+		33662	20903	23177	23225	38610	38610					0.08965130842443614
KNQKVLLI	8	Unmodified	_KNQKVLLI_					0	0	0			REV__ENST00000431189.1_1_7:130652197-130668861:-|nuORF	REV__ENST00000431189.1_1_7:130652197-130668861:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.277099609375	2	478.318577	954.622602	0.099408	4.7549E-05	-0.74903	-0.00035828	-0.64962	-0.00031073	478.31799440226865	75.327	0.31274	75.082	74.878	75.191	-0.24455					11	7	2	0	0	0	0.027866	1	9179	9179		44.531	0	1	68306	+		33663	32218	23178	23226	38611	38611					0.14347514099279124
KNQLKLVI	8	Unmodified	_KNQLKLVI_					0	0	0		ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A;nc|ENSG00000154898|Q8IYA2|CCDC144CP;ENST00000445752.5_1_17:18506915-18528649:-|nuORF;nc|ENSG00000291090|Q3MJ40-2|CCDC144BP;nc|ENSG00000291090|Q3MJ40|CCDC144BP	ENSG00000170160|ENST00000399273|CCDC144A	ENSG00000170160|ENST00000399273|CCDC144A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2771301269531	2	478.318577	954.622602	0.24521	0.00011729	-1.1675	-0.00055845	-0.92232	-0.00044116	478.3179801764081	75.016	0.39619	75.016	74.835	75.232	0					13	9	2	0	0	0	0.027866	1	9205	9205		42.474	0	1	64339			33664	8011	23179	23227	38612	38612					0.14347514099256387
KNQLNPIGSL	10	Unmodified	_KNQLNPIGSL_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2630004882812	2	542.31148	1082.60841	-0.18388	-9.9718E-05	-1.2865	-0.00069771	-1.4704	-0.00079742	542.3089589051071	74.758	0.20613	74.495	74.404	74.61	-0.26326					5	4	2	0	0	0	0.03519	1	8816	8816		17.468	0	1	30657			33665	8965	23180	23228	38613	38613					0.07040816880339662
KNQNIQKP	8	Unmodified	_KNQNIQKP_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.256103515625	2	485.277441	968.540328	-0.82233	-0.00039906	2.9422	0.0014278	2.1199	0.0010287	485.27839303252773	53.378	0.91431	53.231	52.797	53.711	-0.14723					41	24	2	0	0	0	0.027866	1	5728	5728		25.45	5.4534	1	529240			33666	4158	23181	23229	38614	38614					0.05479992020332247
KNQNIQKPE	9	Unmodified	_KNQNIQKPE_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.7740478515625	2	549.798737	1097.58292	-0.94765	-0.00052101	4.4197	0.0024299	3.4721	0.0019089	549.8010309449053	54.92	0.82764	55.018	54.733	55.561	0.098015					44	22	4	0	0	0	0.024319	1	5935	5935		47.657	6.8792	1	1992000			33667	4158	23182	23230	38615	38615					0.03803342357900874
KNQNLPDN	8	Unmodified	_KNQNLPDN_					0	0	0			REV__ENSG00000134046|ENST00000256429|MBD2	REV__ENSG00000134046|ENST00000256429|MBD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7906494140625	2	471.735606	941.456658	-0.1558	-7.3497E-05	0.58726	0.00027703	0.43146	0.00020354	471.73624368376494	25.701	0.6379	25.701	25.363	26.001	0					33	14	3	0	0	0	0.027866	1	1233	1233		10.866	0	1	174000	+		33668	23414	23183	23231	38616	38616					-0.016411641473837335
KNQPRPAQV	9	Unmodified	_KNQPRPAQV_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7578735351562	2	519.296165	1036.57778	0.70324	0.00036519	1.8527	0.00096208	2.5559	0.0013273	519.2968897988192	59.33	0.71777	59.148	58.831	59.549	-0.18134					35	17	3	0	0	0	0.024506	1	6611	6611		23.042	5.6775	1	624620	+		33669	25931	23184	23232	38617	38617					0.06095083285936198
KNQPRPAQV	9	Unmodified	_KNQPRPAQV_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.296165	1036.57778	0.48872	0.00025379	1.4845	0.00077089	1.9732	0.0010247	519.2966829213905	59.134	0.98617	59.134	58.86	59.846	0	-0.025976	-9.0502E-05	NaN	15.642	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	833290	+		33670	25931	23184	23232							0.06095083285936198
KNQPRPAQV	9	Unmodified	_KNQPRPAQV_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.296165	1036.57778	1.1496	0.00059697	0.8155	0.00042349	1.9651	0.0010205	519.2964273393779	59.336	0.83826	59.136	58.923	59.761	-0.20016	-0.024486	-0.00078531	NaN	15.642	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	872340	+		33671	25931	23184	23232							0.06095083285936198
KNQPRPAQV	9	Unmodified	_KNQPRPAQV_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.296165	1036.57778	-0.014285	-7.4179E-06	1.8687	0.00097041	1.8544	0.00096299	519.2969127731551	59.043	0.76551	59.129	58.813	59.579	0.085682	-0.030986	0.00030854	NaN	15.642	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902880	+		33672	25931	23184	23232							0.06095083285936198
KNQSAVLLL	9	Unmodified	_KNQSAVLLL_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2642517089844	2	493.305667	984.596781	0.60611	0.000299	-0.21023	-0.00010371	0.39587	0.00019529	493.30563167433587	71.58	0.46297	71.292	71.074	71.537	-0.28858					20	11	2	0	0	0	0.022484	1	8642	8642		82.305	8.3303	1	196930	+		33673	20681	23185	23233	38618	38618					0.10386619857001733
KNQSIKFL	8	Unmodified	_KNQSIKFL_					0	0	0			REV__VWA3B|p.I1149F|1|0.47|ENSG00000168658|chr2:98303726-98303726|A/T|missense_variant	REV__VWA3B|p.I1149F|1|0.47|ENSG00000168658|chr2:98303726-98303726|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.29296875	2	489.292559	976.570566	-0.90341	-0.00044203	0.89043	0.00043568	-0.012979	-6.3507E-06	489.29290066056853	37.329	1.1191	37.11	36.607	37.726	-0.2195					72	28	4	0	0	0	0.97924	1	2988	2988		40.573	0	1	1604300	+		33674	37781	23186	23234	38619	38619					0.0813435068552053
KNQTARFLP	9	Unmodified	_KNQTARFLP_					0	0	0		ENST00000245448.10_1_14:50779564-50779717:+|nuORF	ENST00000245448.10_1_14:50779564-50779717:+|nuORF	ENST00000245448.10_1_14:50779564-50779717:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7804565429688	2	537.806365	1073.59818	-1.0861	-0.00058409	0.43305	0.00023289	-0.65302	-0.0003512	538.3078812931684	35.379	0.19212	35.423	35.267	35.459	0.04406					6	4	2	0	0	0	0.024506	1	2657	2657		30.504	0	1	96409			33675	11312	23187	23235	38620	38620					0.0643225394574074
KNQTSKLGVA	10	Unmodified	_KNQTSKLGVA_					0	0	0			REV__ENSG00000147316|ENST00000344683|MCPH1	REV__ENSG00000147316|ENST00000344683|MCPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3037109375	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	1.0816	1	10314	10314		35.152	6.0025	1	3714800	+		33676	24547	23188	23236	38621	38621					0.07224530363305348
KNQTTSVAKI	10	Unmodified	_KNQTTSVAKI_					0	0	0		nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54;ENST00000504173.1_1_4:77045750-77069514:-|nuORF;ENST00000508465.5_1_4:77038865-77051838:-|nuORF;ENST00000508604.5_1_4:77039101-77051958:-|nuORF	nc|ENSG00000138750|Q7Z3B4-3|NUP54	nc|ENSG00000138750|Q7Z3B4-3|NUP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.316650390625	2	545.316763	1088.61897	-0.35128	-0.00019156	0.14645	7.9859E-05	-0.20484	-0.0001117	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.0616	1	10551	10551		37.812	7.4938	1	4936700			33677	5276	23189	23237	38622	38622					0.07820799534761136
KNQVEILVS	9	Unmodified	_KNQVEILVS_					0	0	0			REV__ENST00000487282.5_1_2:36780308-36806125:-|nuORF	REV__ENST00000487282.5_1_2:36780308-36806125:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3012084960938	2	515.300581	1028.58661	-0.78093	-0.00040242	-0.74083	-0.00038175	-1.5218	-0.00078417	515.3001078838886	62.425	0.55283	62.247	61.883	62.435	-0.17781					26	14	2	0	0	0	0.50848	1	7044	7044		58.782	4.0056	1	7810900	+		33678	26537	23190	23238	38623	38623					0.07346012131756652
KNQVLFLLD	9	Unmodified	_KNQVLFLLD_					0	0	0		ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167724609375	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.75397	1	11210	11210		42.396	5.237	1	11705000			33679	10839	23191	23239	38624	38624					0.08222889028479585
KNQVLFLLD	9	Unmodified	_KNQVLFLLD_					0	0	0		ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7901000976562	2	545.318774	1088.623	-0.59162	-0.00032262	1.6694	0.00091037	1.0778	0.00058774	545.3196815351206	59.384	0.52194	59.469	59.241	59.763	0.085686					29	13	3	0	0	0	0.024323	1	6666	6666		35.618	0	1	304550			33680	10839	23191	23239	38625	38625					0.08222889028479585
KNRAKRKP	8	Unmodified	_KNRAKRKP_					0	0	0		ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	ENSG00000089902|ENST00000262241|RCOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3131103515625	2	499.322517	996.630481	0.28816	0.00014388	2.1704	0.0010837	2.4585	0.0012276	499.3234195152344	76.899	0.424	76.631	76.424	76.848	-0.26806					12	9	2	0	0	0	0.027866	1	9137	9137		7.1934	0	1	71183			33681	1918	23192	23240	38626	38626					0.1320308613941279
KNRFDIIA	8	Unmodified	_KNRFDIIA_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.78271484375	2	488.782359	975.550165	0.16432	8.0315E-05	-0.88068	-0.00043046	-0.71637	-0.00035015	488.7818646070015	40.311	1.7687	40.311	39.627	41.396	0					137	49	4	0	0	0	0.91239	1	3536	3536		50.025	2.1089	1	10770000	+		33682	28304	23193	23241	38627	38627					0.06141180025701942
KNRGWFAPAP	10	Unmodified	_KNRGWFAPAP_					0	0	0			REV__ENST00000397661.6_1_19:13205763-13205919:+|nuORF	REV__ENST00000397661.6_1_19:13205763-13205919:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2792358398438	2	572.306532	1142.59851	-0.13521	-7.7384E-05	2.0166	0.0011541	1.8813	0.0010767	572.3071796327379	78.22	0.9781	77.964	77.447	78.425	-0.25657					40	22	3	0	0	0	0.03519	1	9313	9313		47.916	15.103	1	176270	+		33683	31779	23194	23242	38628	38628					0.03291673665603412
KNRHMATT	8	Unmodified	_KNRHMATT_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.75250244140625	2	479.747993	957.481433	-0.015943	-7.6485E-06	0.4937	0.00023685	0.47775	0.0002292	479.7474967722885	33.504	0.68018	33.504	33.213	33.894	0					35	18	2	0	0	0	0.027866	1	2447	2447		24.203	11.244	1	193040			33684	1169	23195	23243	38629	38629					0.0009919245433138713
KNRKAIENQI	10	Unmodified	_KNRKAIENQI_					0	0	0		TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.23883056640625	3	405.238566	1212.69387	0.78009	0.00031612	-0.60426	-0.00024487	0.17583	7.1252E-05	405.2384038753428	27.184	1.0993	27.184	26.825	27.924	0					93	28	5	0	0	0	0.72729	2	1463	1463;1476		65.465	15.929	1	16163000			33685	5884	23196	23244	38630;38631	38630					0.09602982065985088
KNRKELVE	8	Unmodified	_KNRKELVE_					0	0	0			REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2277526855469	2	508.298373	1014.58219	-0.40018	-0.00020341	-0.13231	-6.7251E-05	-0.53249	-0.00027066	508.2981634870213	30.632	0.5442	30.388	30.163	30.708	-0.24415					29	12	3	0	0	0	0.027866	1	1972	1972		45.952	0	1	794170	+		33686	24631	23197	23245	38632	38632					0.07548547708859132
KNRKELVE	8	Unmodified	_KNRKELVE_					0	0	0			REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2981872558594	2	508.298373	1014.58219	-0.25467	-0.00012945	-0.13036	-6.6264E-05	-0.38504	-0.00019571	508.2981549014141	30.624	0.50737	30.475	30.219	30.727	-0.14952					30	11	3	0	0	0	0.87148	1	1956	1956		53.351	0	1	732430	+		33687	24631	23197	23245	38633	38633					0.07548547708859132
KNRLVLQTT	9	Unmodified	_KNRLVLQTT_					0	0	0			REV__ENSG00000129667|ENST00000675367|RHBDF2	REV__ENSG00000129667|ENST00000675367|RHBDF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.311279296875	2	536.827298	1071.64004	0.24809	0.00013318	-1.7465	-0.00093757	-1.4984	-0.00080439	536.8269783250931	97.333	1.0214	97.333	96.793	97.815	-3.8147E-05					43	22	3	0	0	0	0.024539	1	12295	12295		14.865	6.6336	1	67463	+		33688	23057	23198	23246	38634	38634					0.10708809634274985
KNRNYEDSV	9	Unmodified	_KNRNYEDSV_					0	0	0		PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3;ENSG00000198300|ENST00000326441|PEG3	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	PEG3|p.K1326Yfs*55|1|0.08|ENSG00000198300|chr19:56814458-56814467|AGCTCCTTTG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.3240356445312	2	562.770177	1123.5258	-0.048057	-2.7045E-05	-0.52872	-0.00029755	-0.57678	-0.00032459	562.7696317157354	63.001	0.56544	62.78	62.576	63.141	-0.22097					31	13	3	0	0	0	0.024427	1	7079	7079		26.693	9.3279	1	1172100			33689	10118	23199	23247	38635	38635					-0.031021249184959743
KNRNYNKL	8	Unmodified	_KNRNYNKL_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|23|1|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|103|2|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|23|1|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|23|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2781372070312	2	525.296165	1048.57778	0.27923	0.00014668	2.0971	0.0011016	2.3764	0.0012483	525.297064778482	84.663	1.067	84.46	83.692	84.759	-0.20329					41	24	3	0	0	0	0.027866	1	10241	10241		33.516	0	1	450810			33690	17842	23200	23248	38636	38636					0.05543083285942885
KNRPSGVL	8	Unmodified	_KNRPSGVL_					0	0	0			REV__L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|8|2|sense	REV__L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|8|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.76123046875	2	435.761426	869.5083	-0.29829	-0.00012998	0.53415	0.00023276	0.23587	0.00010278	435.7615240470349	34.09	0.756	34.141	33.884	34.64	0.050255					43	18	3	0	0	0	0.68535	1	2467	2467		68.485	5.5063	1	1423800	+		33691	36212	23201	23249	38637	38637					0.06832624337198467
KNRPSVPPPP	10	Unmodified	_KNRPSVPPPP_					0	0	0		ARHGAP17|p.R804K|1|0.04|ENSG00000140750|chr16:24930888-24930888|C/T|missense_variant	ARHGAP17|p.R804K|1|0.04|ENSG00000140750|chr16:24930888-24930888|C/T|missense_variant	ARHGAP17|p.R804K|1|0.04|ENSG00000140750|chr16:24930888-24930888|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.8126220703125	2	544.81419	1087.61383	-0.74239	-0.00040446	-0.49619	-0.00027033	-1.2386	-0.00067479	544.8136520689363	54.007	0.6661	53.86	53.566	54.232	-0.14723					33	18	2	0	0	0	0.03519	1	5835	5835		47.96	15.147	1	225670			33692	119	23202	23250	38638	38638					0.07352540462784418
KNRQKSKK	8	Unmodified	_KNRQKSKK_					0	0	0			REV__ENST00000309660.9_2_18:12793524-12793584:-|nuORF	REV__ENST00000309660.9_2_18:12793524-12793584:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.76885986328125	2	508.819807	1015.62506	-0.077828	-3.96E-05	2.3461	0.0011937	2.2683	0.0011541	508.8207846973255	42.271	0.79525	42.148	41.888	42.683	-0.12299					32	20	3	0	0	0	0.027866	1	3787	3787		34.173	8.7224	1	455990	+		33693	30165	23203	23251	38639	38639					0.117873625569473
KNRRAKLA	8	Unmodified	_KNRRAKLA_					0	0	0		nc|ENSG00000178928|Q8N7U7-2|TPRX1;nc|ENSG00000178928|Q8N7U7|TPRX1;ENSG00000178928|ENST00000698655|TPRX1;nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000178928|Q8N7U7-2|TPRX1;nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.2777099609375	2	478.809242	955.603932	0.46369	0.00022202	2.5161	0.0012047	2.9798	0.0014268	478.8103704055164	80.824	0.52024	80.586	80.409	80.93	-0.23784					21	12	2	0	0	0	0.027866	1	9707	9707		42.474	5.446	1	154470			33694	18779;8845	23204	23252	38640	38640					0.12435397248066238
KNRVLQII	8	Unmodified	_KNRVLQII_					0	0	0		nc|ENSG00000132670|P18433-6|PTPRA;ENSG00000132670|ENST00000399903|PTPRA	nc|ENSG00000132670|P18433-6|PTPRA	nc|ENSG00000132670|P18433-6|PTPRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2873840332031	2	492.321651	982.62875	-1.2042	-0.00059288	0.96978	0.00047744	-0.23446	-0.00011543	492.32199971433135	22.264	0.62211	22.338	22.078	22.7	0.073954					26	12	3	0	0	0	0.027866	1	694	694		33.516	26.78	1	128150			33695	4636	23205	23253	38641	38641					0.136740323308004
KNRYRNVL	8	Unmodified	_KNRYRNVL_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7899169921875	2	531.811982	1061.60941	-0.43404	-0.00023083	2.4554	0.0013058	2.0213	0.001075	531.8132691541238	64.192	0.65627	63.941	63.659	64.315	-0.25141					30	17	2	0	0	0	0.027866	1	7506	7506		42.474	22.478	1	1001500			33696	1681	23206	23254	38642	38642					0.08107076039891581
KNRYWKVG	8	Unmodified	_KNRYWKVG_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.8270874023438	2	525.795801	1049.57705	-0.68295	-0.00035909	2.3251	0.0012225	1.6421	0.00086341	526.2988805872079	98.138	0.25197	98.138	97.981	98.233	0					8	5	2	0	0	0	0.027866	1	12536	12536		26.796	0	1	40922	+		33697	36804	23207	23255	38643	38643					0.05424288636891106
KNSALQTLKP	10	Unmodified	_KNSALQTLKP_					0	0	0		nc|ENSG00000141255|Q8NHS9-3|SPATA22;nc|ENSG00000141255|Q8NHS9-2|SPATA22;ENSG00000141255|ENST00000572969|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.32666015625	2	550.327131	1098.63971	0.081598	4.4906E-05	0.30983	0.00017051	0.39143	0.00021541	550.3276499365805	98.961	0.92738	98.957	98.596	99.523	-0.0038834					49	20	3	0	0	0	1.0122	1	12630	12630		44.377	0	1	255790			33698	5478	23208	23256	38644	38644					0.09433389914443069
KNSAMRTEP	9	Unmodified	_KNSAMRTEP_					0	0	0		ENST00000479645.1_1_22:46711975-46724816:+|nuORF;ENSG00000075218|ENST00000454366|GTSE1	ENST00000479645.1_1_22:46711975-46724816:+|nuORF	ENST00000479645.1_1_22:46711975-46724816:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2896728515625	2	517.258391	1032.50223	-0.74273	-0.00038418	0.50881	0.00026319	-0.23392	-0.000121	517.2584414259891	33.524	1.1932	33.524	33.251	34.444	0					49	31	2	0	0	0	0.02435	1	2510	2510		34.173	18.531	1	154290			33699	1546	23209	23257	38645	38645					-0.012722619566602589
KNSAVLPQ	8	Unmodified	_KNSAVLPQ_					0	0	0			REV__ENSG00000164404|ENST00000687138|GDF9	REV__ENSG00000164404|ENST00000687138|GDF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.870849609375	2	428.747985	855.481417	1.5388	0.00065976	1.9365	0.00083028	3.4753	0.00149	428.7489348730888	36.233	0.5733	36.034	35.843	36.416	-0.19829					17	14	2	0	0	0	0.027866	1	2859	2859		27.882	0	1	89852	+		33700	25751	23210	23258	38646	38646					0.047895157259858934
KNSEKLNLN	9	Unmodified	_KNSEKLNLN_					0	0	0			REV__ENSG00000176407|ENST00000409785|KCMF1	REV__ENSG00000176407|ENST00000409785|KCMF1	MSMS	OPSCC_40_ClassI_Rep-2	5	530.2850952148438	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.247	1	97.123	96.623	97.623	-0.12368								0	0	0	0.6291	1	12037	12037		35.618	1.4457	1		+		33701	27019	23211	23259	38647	38647					0.04507939983614051
KNSFKMLSEK	10	Unmodified	_KNSFKMLSEK_					0	0	0		INPP4B|p.L447F|1|0.32|ENSG00000109452|chr4:142173650-142173650|T/G|missense_variant	INPP4B|p.L447F|1|0.32|ENSG00000109452|chr4:142173650-142173650|T/G|missense_variant	INPP4B|p.L447F|1|0.32|ENSG00000109452|chr4:142173650-142173650|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.923095703125	3	404.553274	1210.63799	0.53624	0.00021694	-4.2816	-0.0017322	-3.7454	-0.0015152	404.55164215721953	26.534	0.31725	26.366	26.188	26.506	-0.16816					11	7	2	0	0	0	0.03519	1	1371	1371		29.551	3.4874	1	61566			33702	17769	23212	23260	38648	38648					0.041100128341668096
KNSFLNESI	9	Unmodified	_KNSFLNESI_					0	0	0			REV__MTHFD1L-RNF216|1|fusion;REV__ENSG00000120254|ENST00000367321|MTHFD1L	REV__MTHFD1L-RNF216|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2621459960938	2	526.274564	1050.53457	-0.41351	-0.00021762	2.3917	0.0012587	1.9782	0.0010411	526.2744253276387	55.824	0.60039	55.824	55.573	56.174	0					24	16	2	0	0	0	0.022832	1	6197	6197		71.877	29.481	1	192410	+		33703	36397;22519	23213	23261	38649	38649					0.011328487180207958
KNSGGKERES	10	Unmodified	_KNSGGKERES_					0	0	0		ENST00000265085.9_1_5:173315567-173315726:+|nuORF	ENST00000265085.9_1_5:173315567-173315726:+|nuORF	ENST00000265085.9_1_5:173315567-173315726:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8036499023438	2	546.275626	1090.5367	-0.55556	-0.00030349	3.8833	0.0021214	3.3278	0.0018179	546.2777320683703	22.133	0.37907	21.948	21.715	22.094	-0.18539					13	7	2	0	0	0	0.03519	1	727	727		20.837	9.9716	1	35105			33704	11585	23214	23262	38650	38650					-0.004947225441810588
KNSGVDEAFF	10	Unmodified	_KNSGVDEAFF_					0	0	0			REV__nc|ENSG00000142192|P05067-10|APP	REV__nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.8086547851562	2	557.264196	1112.51384	-0.069722	-3.8854E-05	-0.73287	-0.0004084	-0.80259	-0.00044725	557.262465579693	52.185	0.45951	52.185	52.012	52.472	0					20	11	3	0	0	0	0.03519	1	5571	5571		45.972	0	1	238280	+		33705	24142	23215	23263	38651	38651					-0.03791741661666492
KNSGVDEAFF	10	Unmodified	_KNSGVDEAFF_					0	0	0			REV__nc|ENSG00000142192|P05067-10|APP	REV__nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8084106445312	2	557.264196	1112.51384	-0.11964	-6.667E-05	-2.4468	-0.0013635	-2.5664	-0.0014302	557.2624627573255	52.326	0.38542	52.179	52.021	52.406	-0.14735					14	9	2	0	0	0	0.03519	1	5565	5565		27.882	0	1	185290	+		33706	24142	23215	23263	38652	38652					-0.03791741661666492
KNSKKVQPN	9	Unmodified	_KNSKKVQPN_					0	0	0		ENSG00000176749|ENST00000313401|CDK5R1	ENSG00000176749|ENST00000313401|CDK5R1	ENSG00000176749|ENST00000313401|CDK5R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7839965820312	2	521.803823	1041.59309	-0.010014	-5.2255E-06	1.9517	0.0010184	1.9417	0.0010132	521.8044441337545	68.147	0.38551	67.859	67.593	67.978	-0.28834					15	9	2	0	0	0	0.024261	1	8138	8138		54.776	7.119	1	70238			33707	8667	23216	23264	38653	38653					0.07395950083150638
KNSLIQRR	8	Unmodified	_KNSLIQRR_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.788330078125	2	507.811982	1013.60941	-0.52306	-0.00026562	-2.827	-0.0014356	-3.3501	-0.0017012	507.8101351665152	20.406	0.58853	20.301	19.981	20.569	-0.10477					17	11	2	0	0	0	0.027866	1	499	499		55.504	5.4797	1	91594	+		33708	20928	23217	23265	38654	38654					0.1031507603989894
KNSLIQRR	8	Unmodified	_KNSLIQRR_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.811982	1013.60941	1.3599	0.00069055	-6.2985	-0.0031985	-4.9387	-0.0025079	507.80929162473865	20.227	0.54219	20.296	20.021	20.563	0.068901	-0.071349	0.0037681	NaN	55.504	21	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67104	+		33709	20928	23217	23265							0.1031507603989894
KNSPPTLEG	9	Unmodified	_KNSPPTLEG_					0	0	0		nc|ENSG00000115694|O00506-2|STK25;STK25|p.K288*|1|0.2|ENSG00000115694|chr2:241498694-241498695|-/A|frameshift_variant;nc|ENSG00000115694|O00506-3|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000495143.5_1_2:242438052-242438731:-|nuORF;ENST00000487962.5_1_2:242435079-242438851:-|nuORF;ENST00000478403.5_1_2:242436769-242438604:-|nuORF	nc|ENSG00000115694|O00506-2|STK25;ENST00000478403.5_1_2:242436769-242438604:-|nuORF	nc|ENSG00000115694|O00506-2|STK25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7356262207031	2	471.748182	941.481811	-0.38565	-0.00018193	0.93359	0.00044042	0.54794	0.00025849	471.7486057377078	37.839	0.64249	37.871	37.525	38.167	0.032269					29	17	2	0	0	0	0.024447	1	3050	3050		25.574	6.4705	1	540510			33710	18191;15147	23218	23266	38655	38655					0.00872890655205083
KNSPPTLEG	9	Unmodified	_KNSPPTLEG_					0	0	0		nc|ENSG00000115694|O00506-2|STK25;STK25|p.K288*|1|0.2|ENSG00000115694|chr2:241498694-241498695|-/A|frameshift_variant;nc|ENSG00000115694|O00506-3|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000495143.5_1_2:242438052-242438731:-|nuORF;ENST00000487962.5_1_2:242435079-242438851:-|nuORF;ENST00000478403.5_1_2:242436769-242438604:-|nuORF	nc|ENSG00000115694|O00506-2|STK25;ENST00000478403.5_1_2:242436769-242438604:-|nuORF	nc|ENSG00000115694|O00506-2|STK25	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.748182	941.481811	-0.79341	-0.00037429	3.9457	0.0018614	3.1522	0.0014871	471.7519185781859	38.067	0.19666	38.067	37.969	38.166	0	0.097723	0.00059655	NaN	13.454	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54115			33711	18191;15147	23218	23266							0.00872890655205083
KNSSKTVLN	9	Unmodified	_KNSSKTVLN_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2663269042969	2	495.782556	989.550559	-0.17541	-8.6964E-05	3.3745	0.001673	3.1991	0.001586	495.78412138013175	49.369	0.54361	49.217	48.9	49.443	-0.15276					27	14	3	0	0	0	0.024319	1	5051	5051		47.657	5.2612	1	598230			33712	4475	23219	23267	38656	38656					0.05536554954892381
KNSSVGPLY	9	Unmodified	_KNSSVGPLY_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.F13051L|1|0.08|ENSG00000181143|chr19:8898644-8898644|G/C|missense_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.7584533691406	2	482.758549	963.502546	0.096882	4.6771E-05	-0.027475	-1.3264E-05	0.069407	3.3507E-05	482.75837451346143	49.416	0.90714	49.315	48.918	49.825	-0.1008					54	23	4	0	0	0	0.56934	1	4952	4952		54.776	8.0099	1	2199300			33713	9025	23220	23268	38657	38657					0.019334810348595965
KNSVHGNSL	9	Unmodified	_KNSVHGNSL_					0	0	0			REV__ENST00000477298.1_1_7:6639605-6641772:+|nuORF	REV__ENST00000477298.1_1_7:6639605-6641772:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.7591552734375	2	478.251423	954.488293	-0.77426	-0.00037029	-2.7707	-0.0013251	-3.545	-0.0016954	478.2497841218683	38.56	0.38636	38.338	38.153	38.539	-0.22149					13	9	3	0	0	0	0.023635	1	3181	3181		76.774	0	1	65241	+		33714	24501	23221	23269	38658	38658					0.009228286065763314
KNSVTVSI	8	Unmodified	_KNSVTVSI_					0	0	0			REV__nc|nan|Q8N9M1-3|C19orf47	REV__nc|nan|Q8N9M1-3|C19orf47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.8901672363281	2	424.247818	846.481082	-1.1683	-0.00049563	3.5808	0.0015192	2.4126	0.0010235	424.249187087806	20.289	1.0192	20.289	19.929	20.949	0					22	20	2	0	0	0	0.027866	1	516	516		24.203	1.1603	1	7824.4	+		33715	25317	23222	23270	38659	38659					0.051700960061339174
KNTIDYLL	8	Unmodified	_KNTIDYLL_					0	0	0			REV__nc|ENSG00000172794|Q96AX2-2|RAB37	REV__nc|ENSG00000172794|Q96AX2-2|RAB37	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.27691650390625	2	490.276575	978.538597	0.26161	0.00012826	-0.098152	-4.8122E-05	0.16346	8.0139E-05	490.2763582706394	76.587	0.88044	76.335	76.023	76.903	-0.25162					44	20	3	0	0	0	0.6248	1	9110	9110		73.975	8.1716	1	762230	+		33716	36944	23223	23271	38660	38660					0.04846938211710494
KNTISGMLL	9	Unmodified	_KNTISGMLL_					0	0	0		ENST00000230381.6_1_6:42664819-42665101:-|nuORF	ENST00000230381.6_1_6:42664819-42665101:-|nuORF	ENST00000230381.6_1_6:42664819-42665101:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7678527832031	2	488.778428	975.542302	1.2214	0.00059698	0.94614	0.00046245	2.1675	0.0010594	488.7796897176708	22.899	0.14022	22.708	22.617	22.758	-0.19117					4	2	2	0	0	0	0.024511	1	821	821		25.574	4.6271	1	8857.6			33717	11232	23224	23272	38661	38661					0.05355284713925812
KNTKLEAIP	9	Unmodified	_KNTKLEAIP_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29254150390625	2	507.303124	1012.5917	0.26238	0.00013311	3.0864	0.0015657	3.3488	0.0016988	507.30437976564195	74.471	0.67487	74.213	73.902	74.577	-0.25887					22	15	2	0	0	0	0.024374	1	9075	9075		49.442	3.4896	1	150120			33718	1421	23225	23273	38662	38662					0.08590315994376851
KNTKLEAIP	9	Unmodified	_KNTKLEAIP_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.29266357421875	2	507.303124	1012.5917	-0.55317	-0.00028062	3.1469	0.0015965	2.5938	0.0013158	507.3045908354382	74.083	0.72899	74.093	73.793	74.522	0.0096512					29	16	2	0	0	0	0.024344	1	9005	9005		64.207	28.589	1	119330			33719	1421	23225	23273	38663	38663					0.08590315994376851
KNTKLEAIP	9	Unmodified	_KNTKLEAIP_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.303124	1012.5917	0.091189	4.626E-05	4.6379	0.0023528	4.729	0.0023991	507.3053229570438	74.429	0.1758	74.154	74.089	74.265	-0.27573	-0.020626	0.00093542	NaN	52.937	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53714			33720	1421	23225	23273							0.08590315994376851
KNTKLEAIP	9	Unmodified	_KNTKLEAIP_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.303124	1012.5917	0.14893	7.555E-05	4.2838	0.0021732	4.4327	0.0022487	507.305194180369	74.44	0.17625	74.177	74.098	74.274	-0.26326	0.0025684	0.00057616	NaN	52.937	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52815			33721	1421	23225	23273							0.08590315994376851
KNTLQPTALL	10	Unmodified	_KNTLQPTALL_					0	0	0			REV__ENSG00000113615|ENST00000398844|SEC24A	REV__ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.8319091796875	2	549.829506	1097.64446	-0.0046437	-2.5532E-06	3.595	0.0019767	3.5904	0.0019741	549.8314186511744	105.14	1.5776	105.02	104.74	106.32	-0.12444					108	51	4	0	0	0	1.0344	1	13117	13117		41.427	0.64845	1	3935400	+		33722	22078	23226	23274	38664	38664					0.0995427405719056
KNTLSKAIYL	10	Unmodified	_KNTLSKAIYL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant;ENST00000556591.1_1_12:96948025-96958672:+|nuORF	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8433837890625	2	575.845156	1149.67576	-0.10957	-6.3095E-05	-3.6823	-0.0021204	-3.7919	-0.0021835	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0992	1	11371	11371		32.812	3.6424	1	4935500			33723	9730	23227	23275	38665	38665					0.10690847091291289
KNTNQDIYREM	11	Unmodified	_KNTNQDIYREM_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2665710449219	3	471.225997	1410.65616	-0.67335	-0.0003173	-1.961	-0.00092406	-2.6343	-0.0012414	471.22479643364676	30.094	0.55521	29.915	29.527	30.083	-0.17818					16	12	2	0	0	0	0.02473	1	1839	1839		39.873	3.5555	1	45403			33724	4483	23228	23276	38666	38666					-0.032738969817955876
KNTNVVDEL	9	Unmodified	_KNTNVVDEL_					0	0	0		ENST00000560964.1_1_15:83486673-83495202:+|nuORF;ENSG00000156232|ENST00000286760|WHAMM	ENST00000560964.1_1_15:83486673-83495202:+|nuORF	ENST00000560964.1_1_15:83486673-83495202:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2720336914062	2	516.272021	1030.52949	0.012635	6.5232E-06	-0.54438	-0.00028105	-0.53175	-0.00027453	516.2717531147899	39.565	0.69602	39.565	39.183	39.879	0					49	19	3	0	0	0	0.18994	1	3399	3399		90.601	4.739	1	14668000			33725	6517	23229	23277	38667	38667					0.015445448553691676
KNTQDVPI	8	Unmodified	_KNTQDVPI_					0	0	0			REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	457.750724	913.486896	-0.29751	-0.00013619	2.0158	0.00092272	1.7183	0.00078653	457.75138860391854	26.752	0.53793	26.729	26.405	26.943	-0.023088					18	12	2	0	0	0	0.027866	1	1367	1367		33.516	0	1	68490	+		33726	23874	23230	23278	38668	38668					0.026691945178072274
KNTRRLKT	8	Unmodified	_KNTRRLKT_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2921447753906	2	508.819807	1015.62506	-0.19473	-9.9084E-05	3.0238	0.0015386	2.8291	0.0014395	508.8213561874259	50.08	0.56682	50.161	49.81	50.377	0.08099					23	16	2	0	0	0	0.027866	1	5189	5189		23.042	8.1776	1	353030	+		33727	22133	23231	23279	38669	38669					0.11787362556935932
KNTYLVLV	8	Unmodified	_KNTYLVLV_					0	0	0		ENST00000274242.9_2_5:40832528-40832603:-|nuORF	ENST00000274242.9_2_5:40832528-40832603:-|nuORF	ENST00000274242.9_2_5:40832528-40832603:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.289794921875	2	475.289485	948.564418	2.0211	0.00096059	-1.481	-0.00070389	0.54008	0.00025669	475.2886468791314	59.049	1.3031	58.862	58.173	59.476	-0.18705					88	35	4	0	0	0	0.87148	1	6678	6678		53.351	2.1588	1	10702000			33728	11680	23232	23280	38670	38670					0.08807832453987885
KNVAKPSVM	9	Unmodified	_KNVAKPSVM_					0	0	0		nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.27801513671875	2	487.278595	972.542637	-0.13695	-6.6732E-05	-2.0305	-0.0009894	-2.1674	-0.0010561	487.27746688226586	40.54	0.92827	40.315	40.041	40.969	-0.225					60	24	3	0	0	0	0.53979	1	3505	3505		56.721	3.3696	1	3002000			33729	18621	23233	23281	38671	38671					0.0552670443378247
KNVARLPK	8	Unmodified	_KNVARLPK_					0	0	0		ENSG00000101134|ENST00000262593|DOK5	ENSG00000101134|ENST00000262593|DOK5	ENSG00000101134|ENST00000262593|DOK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.26690673828125	2	463.300719	924.586885	-0.39724	-0.00018404	0.10555	4.8903E-05	-0.29169	-0.00013514	463.3008184872146	43.064	0.87163	43.064	42.461	43.332	0					43	23	3	0	0	0	0.027866	1	3952	3952		18.324	0	1	593040			33730	2284	23234	23282	38672	38672					0.12157476642278198
KNVESKVKN	9	Unmodified	_KNVESKVKN_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303466796875	2	523.303655	1044.59276	-0.30343	-0.00015878	-0.91784	-0.00048031	-1.2213	-0.00063909	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.6238	1	11067	11067		51.193	3.5354	1	11993000	+		33731	21260	23235	23283	38673	38673					0.07224530363305348
KNVISNFSDK	10	Unmodified	_KNVISNFSDK_					0	0	0			REV__ENST00000370765.10_1_6:56483328-56483529:-|nuORF	REV__ENST00000370765.10_1_6:56483328-56483529:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.29833984375	2	576.306395	1150.59824	-0.4135	-0.0002383	4.0681	0.0023445	3.6546	0.0021061	576.3087838508874	92.647	0.49618	92.525	92.301	92.797	-0.12242					19	11	2	0	0	0	0.03519	1	11385	11385		23.523	0	1	106160	+		33732	31138	23236	23284	38674	38674					0.02896209155096585
KNVITIPLE	9	Unmodified	_KNVITIPLE_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.8150634765625	2	513.813325	1025.6121	-0.52251	-0.00026847	4.4245	0.0022734	3.902	0.0020049	513.8154753786599	44.992	0.86298	44.739	44.429	45.292	-0.25252					54	22	4	0	0	0	0.70156	1	4213	4213		45.972	1.5951	1	3021400	+		33733	25874	23237	23285	38675	38675					0.10031486654202126
KNVKKHAYV	9	Unmodified	_KNVKKHAYV_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.244140625	2	543.824558	1085.63456	-0.32141	-0.00017479	-1.4647	-0.00079655	-1.7861	-0.00097134	543.8233742744769	64.466	0.35589	64.263	64.105	64.461	-0.20254					13	8	2	0	0	0	0.024436	1	7322	7322		38.806	5.9937	1	88639	+		33734	27363	23238	23286	38676	38676					0.09517130842459665
KNVKRLNF	8	Unmodified	_KNVKRLNF_					0	0	0			REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	REV__nc|ENSG00000156256|Q9Y5T5-4|USP16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7548522949219	2	509.811451	1017.60835	-0.30503	-0.00015551	-0.0083625	-4.2633E-06	-0.31339	-0.00015977	509.8106787942517	37.329	0.46538	37.266	37.091	37.556	-0.063389					16	12	2	0	0	0	0.027866	1	3047	3047		13.775	0	1	187190	+		33735	25064	23239	23287	38677	38677					0.10024861670990504
KNVLELSIY	9	Unmodified	_KNVLELSIY_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8212280273438	2	539.810782	1077.60701	-1.7809	-0.00096136	1.1487	0.0006201	-0.6322	-0.00034127	539.8111667965039	65.118	0.86118	64.855	64.613	65.474	-0.2626					50	23	3	0	0	0	0.024535	1	7625	7625		7.1934	0	1	1126600			33736	6738	23240	23288	38678	38678					0.07131182791590618
KNVLIAVII	9	Unmodified	_KNVLIAVII_					0	0	0		NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant	NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant	NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7806701660156	2	491.836603	981.658653	-0.029205	-1.4364E-05	-0.034394	-1.6916E-05	-0.063599	-3.128E-05	491.8364848103919	78.307	0.82382	78.307	78.001	78.825	0					43	19	3	0	0	0	0.024354	1	9650	9650		38.806	0	1	1009700			33737	18020	23241	23289	38679	38679					0.1670897127612534
KNVLIAVII	9	Unmodified	_KNVLIAVII_					0	0	0		NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant	NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant	NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7808532714844	2	491.836603	981.658653	-0.43928	-0.00021606	0.22622	0.00011126	-0.21306	-0.00010479	491.8365630644696	78.369	0.70075	78.385	78.073	78.774	0.015907					41	16	3	0	0	0	0.024205	1	9580	9580		53.351	24.202	1	987510			33738	18020	23241	23289	38680	38680					0.1670897127612534
KNVLLHQA	8	Unmodified	_KNVLLHQA_					0	0	0		ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7590026855469	2	461.777077	921.5396	-0.047715	-2.2034E-05	2.0044	0.00092558	1.9567	0.00090355	461.7780591027139	30.655	0.37313	30.729	30.461	30.834	0.074314					12	8	2	0	0	0	0.027866	1	1902	1902		12.207	8.5225	1	197000			33739	1015	23242	23290	38681	38681					0.0756919737127646
KNVLRLLL	8	Unmodified	_KNVLRLLL_					0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7980651855469	2	484.834394	967.654236	0.13898	6.7382E-05	-2.8923	-0.0014023	-2.7533	-0.0013349	484.8332648884265	58.647	0.36384	58.738	58.598	58.962	0.091217					21	9	3	0	0	0	0.027866	1	6602	6602		42.474	0	1	514180			33740	7585	23243	23291	38682	38682					0.1691150685322782
KNVLSLDVI	9	Unmodified	_KNVLSLDVI_					0	0	0			REV__chr2:142908028-142918609|138|13.59|0.19|6.15|+|2|None,KYNU|1	REV__chr2:142908028-142918609|138|13.59|0.19|6.15|+|2|None,KYNU|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.77880859375	2	500.8055	999.596446	0.37416	0.00018738	-0.35348	-0.00017702	0.020684	1.0359E-05	500.8054404906985	71.717	0.29789	71.727	71.544	71.842	0.010292					11	7	2	0	0	0	0.024261	1	8640	8640		54.776	3.4409	1	87709	+		33741	19408	23244	23292	38683	38683					0.09663200137117656
KNVNLKKDS	9	Unmodified	_KNVNLKKDS_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000485737.1_1_3:47721925-47742822:-|nuORF	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3036499023438	2	523.303655	1044.59276	-0.30343	-0.00015878	-0.91784	-0.00048031	-1.2213	-0.00063909	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.75397	1	11219	11219		42.396	1.618	1	11993000			33742	8376	23245	23293	38684	38684					0.07224530363282611
KNVNLVVMST	10	Unmodified	_KNVNLVVMST_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7828979492188	2	552.807716	1103.60088	0.41696	0.0002305	0.14563	8.0503E-05	0.56258	0.000311	552.8075949826323	82.41	0.65126	82.19	81.871	82.522	-0.22015					35	14	3	0	0	0	0.03519	1	9962	9962		64.207	18.235	1	661360	+		33743	28289	23246	23294	38685	38685					0.05322341288410826
KNVPKALTVEI	11	Unmodified	_KNVPKALTVEI_					0	0	0			REV__nc|ENSG00000151962|Q8TBY0-2|RBM46	REV__nc|ENSG00000151962|Q8TBY0-2|RBM46	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.369384765625	2	606.371538	1210.72852	-2.2008	-0.0013345	-1.0933	-0.00066292	-3.2941	-0.0019974	606.3707256009532	92.689	2.8402	92.546	91.661	94.501	-0.14356					195	66	4	0	0	0	1.0075	1	11387	11387		35.152	2.3396	1	701690	+		33744	24808	23247	23295	38686	38686					0.13158805154080255
KNVPLLEK	8	Unmodified	_KNVPLLEK_					0	0	0		nc|ENSG00000188266|A2RU49-3|HYKK;ENSG00000188266|ENST00000388988|HYKK	nc|ENSG00000188266|A2RU49-3|HYKK	nc|ENSG00000188266|A2RU49-3|HYKK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7718505859375	2	470.794935	939.575317	0.23014	0.00010835	-0.48301	-0.0002274	-0.25286	-0.00011905	470.79448501338123	46.916	0.38999	46.763	46.55	46.94	-0.15301					12	9	2	0	0	0	0.027866	1	4622	4622		17.365	0	1	152040			33745	9703	23248	23296	38687	38687					0.10311234828293436
KNVQRLVK	8	Unmodified	_KNVQRLVK_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.77252197265625	2	492.819276	983.623999	-0.8298	-0.00040894	-1.5983	-0.00078767	-2.4281	-0.0011966	492.81836512228136	20.84	0.38946	20.84	20.609	20.998	0					12	7	2	0	0	0	0.027866	1	588	588		37.159	5.2042	1	19264			33746	9130	23249	23297	38688	38688					0.13153148188030173
KNVRPAEV	8	Unmodified	_KNVRPAEV_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.88812255859375	2	456.766709	911.518865	-0.97386	-0.00044483	-2.3505	-0.0010736	-3.3244	-0.0015185	456.7653032864412	37.862	0.48068	37.78	37.503	37.984	-0.082516					19	13	2	0	0	0	0.027866	1	3080	3080		31.955	0	1	159160			33747	4580	23250	23298	38689	38689					0.05956606991605895
KNVRQRQNDF	10	Unmodified	_KNVRQRQNDF_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7592468261719	3	435.565453	1303.67453	0.15679	6.8294E-05	2.8643	0.0012476	3.0211	0.0013159	435.5666129671372	21.382	0.29185	21.454	21.254	21.546	0.071487					7	5	2	0	0	0	0.03519	1	623	623		33.922	3.3528	1	9612			33748	3231	23251	23299	38690	38690					0.03484025775082955
KNVRRNTEE	9	Unmodified	_KNVRRNTEE_					0	0	0			REV__ENSG00000095015|ENST00000399503|MAP3K1	REV__ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.245849609375	2	573.304718	1144.59488	-0.047646	-2.7316E-05	2.9576	0.0016956	2.91	0.0016683	573.3061626440085	73.738	0.3161	73.461	73.288	73.605	-0.2769					13	7	2	0	0	0	0.024021	1	8670	8670		58.782	28.213	1	193660	+		33749	20955	23252	23300	38691	38691					0.02836959101091452
KNVTFHGVLLD	11	Unmodified	_KNVTFHGVLLD_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.89837646484375	3	414.89955	1241.67682	-0.59711	-0.00024774	-2.3271	-0.00096552	-2.9242	-0.0012133	414.89867835631566	25.215	1.3769	25.181	24.815	26.192	-0.034395					96	32	6	0	0	0	0.86757	1	1138	1138		53.597	2.0691	1	11333000			33750	7968	23253	23301	38692	38692					0.06565061460173638
KNVVDVKIL	9	Unmodified	_KNVVDVKIL_					0	0	0			REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.278076171875	2	514.329142	1026.64373	0.60793	0.00031268	-3.9196	-0.002016	-3.3116	-0.0017033	514.3275002044124	40.936	0.42836	40.813	40.441	40.87	-0.12317					20	11	3	0	0	0	0.024477	1	3569	3569		20.947	6.8098	1	1264800	+		33751	28322	23254	23302	38693	38693					0.13147479408144136
KNVVDVKIL	9	Unmodified	_KNVVDVKIL_					0	0	0			REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.329142	1026.64373	-0.91637	-0.00047131	-0.022443	-1.1543E-05	-0.93881	-0.00048286	514.3291995584525	41.136	0.30803	40.906	40.733	41.041	-0.23029	0.1176	0.00092451	NaN	9.7057	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162760	+		33752	28322	23254	23302							0.13147479408144136
KNVVSHRA	8	Unmodified	_KNVVSHRA_					0	0	0		ENSG00000164082|ENST00000395052|GRM2;ENST00000296479.9_1_3:51747995-51752125:+|nuORF	ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7532043457031	2	455.764501	909.514448	0.12497	5.6956E-05	-0.013142	-5.9896E-06	0.11183	5.0966E-05	455.76434187430186	22.767	0.92805	22.767	22.432	23.36	0					32	20	2	0	0	0	0.027866	1	817	817		14.865	0	1	566610			33753	7207	23255	23303	38694	38694					0.056071425687036935
KNVYAIIMLTK	11	Unmodified	_KNVYAIIMLTK_					0	0	0		ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-3|PTPRJ	ENSG00000149177|ENST00000418331|PTPRJ	ENSG00000149177|ENST00000418331|PTPRJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.3051452636719	3	431.92482	1292.75263	0.80778	0.0003489	-2.1205	-0.0009159	-1.3127	-0.000567	432.2583758331859	74.675	1.7214	74.492	74.005	75.727	-0.18278					74	41	3	0	0	0	0.024726	1	8861	8861		25.892	8.725	1	319480			33754	6068	23256	23304	38695	38695					0.11796322316081387
KNWLKKFASK	10	Unmodified	_KNWLKKFASK_					0	0	0		ENST00000591612.1_1_18:77794495-77794654:+|nuORF;ENSG00000267127|ENST00000569722|unknown;ENST00000586847.1_1_18:77794393-77797276:+|nuORF;nc|ENSG00000101546|Q8N0V3-2|RBFA;ENSG00000101546|ENST00000306735|RBFA	ENST00000591612.1_1_18:77794495-77794654:+|nuORF	ENST00000591612.1_1_18:77794495-77794654:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.71197509765625	3	417.252036	1248.73428	-0.19557	-8.1601E-05	-3.7144	-0.0015498	-3.9099	-0.0016314	417.2504676139542	25.3	0.83477	25.13	24.825	25.659	-0.17078					26	19	2	0	0	0	0.03519	1	1243	1243		12.957	2.3707	1	78950			33755	2335	23257	23305	38696	38696					0.1198594845639036
KNWRKAPL	8	Unmodified	_KNWRKAPL_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27191162109375	2	506.806168	1011.59778	-0.4376	-0.00022178	-1.5465	-0.00078376	-1.9841	-0.0010055	506.8053488619896	35.428	1.1741	35.472	34.794	35.968	0.04406					77	30	4	0	0	0	0.027866	1	2732	2732		33.516	16.798	1	965410			33756	1538	23258	23306	38697	38697					0.09244879016557661
KNWRRNLMMHF	11	Unmodified	_KNWRRNLMMHF_					0	0	0		ENST00000489797.1_1_13:73356473-73366636:+|nuORF	ENST00000489797.1_1_13:73356473-73366636:+|nuORF	ENST00000489797.1_1_13:73356473-73366636:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.79718017578125	3	511.595702	1531.76528	-1.0167	-0.00052012	-1.8315	-0.00093697	-2.8481	-0.0014571	511.5953512703157	61.105	0.28886	60.929	60.833	61.122	-0.1761					8	6	2	0	0	0	0.024801	1	6818	6818		23.378	9.2919	1	49536			33757	15419	23259	23307	38698	38698					0.02066455227327424
KNYFKRFFNFA	11	Unmodified	_KNYFKRFFNFA_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7964172363281	3	494.594461	1480.76155	0.071675	3.545E-05	2.3592	0.0011668	2.4309	0.0012023	494.5955019646356	62.708	0.50043	62.771	62.524	63.024	0.062767					17	11	3	0	0	0	0.024801	1	7194	7194		17.833	0	1	197660	+		33758	28147;28441;28494	23260	23308	38699	38699					0.040404319968047275
KNYFKRFFNFA	11	Unmodified	_KNYFKRFFNFA_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	494.594461	1480.76155	-0.53525	-0.00026473	2.9458	0.001457	2.4106	0.0011923	494.59611096356747	62.774	0.44874	62.774	62.531	62.98	0	0.050986	8.2767E-07	NaN	17.833	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186380	+		33759	28147;28441;28494	23260	23308							0.040404319968047275
KNYFKRFFNFA	11	Unmodified	_KNYFKRFFNFA_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198626|ENST00000366574|RYR2	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	494.594461	1480.76155	-0.85734	-0.00042404	3.365	0.0016643	2.5077	0.0012403	494.93047489943564	62.863	0.45507	62.624	62.492	62.947	-0.23926	-0.098859	0.00062285	NaN	17.833	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240110	+		33760	28147;28441;28494	23260	23308							0.040404319968047275
KNYGMTRMDP	10	Unmodified	_KNYGMTRMDP_					0	0	0		ENSG00000078902|ENST00000317204|TOLLIP	ENSG00000078902|ENST00000317204|TOLLIP	ENSG00000078902|ENST00000317204|TOLLIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	607.7569580078125	2	606.778633	1211.54271	-1.2573	-0.0007629	-2.5397	-0.001541	-3.797	-0.0023039	606.7773918922874	52.585	0.8442	52.458	51.787	52.632	-0.12705					30	21	2	0	0	0	0.03519	1	5365	5365		47.657	0	1	106000			33761	1649	23261	23309	38700	38700					-0.054596636285396016
KNYGNNFLN	9	Unmodified	_KNYGNNFLN_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845;ZNF845|p.S189C|1|0.22|ENSG00000213799|chr19:53351241-53351241|C/G|missense_variant	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.3137817382812	2	542.26453	1082.51451	-1.0884	-0.0005902	-2.0753	-0.0011254	-3.1637	-0.0017156	542.2629857574766	69.304	0.37768	69.319	68.974	69.352	0.015121					14	9	2	0	0	0	0.024457	1	8251	8251		15.642	0	1	101050			33762	10523	23262	23310	38701	38701					-0.02344902221943812
KNYLVNLIN	9	Unmodified	_KNYLVNLIN_					0	0	0		ENST00000276682.8_1_8:117777777-117777918:-|nuORF	ENST00000276682.8_1_8:117777777-117777918:-|nuORF	ENST00000276682.8_1_8:117777777-117777918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.78173828125	2	545.816399	1089.61824	-0.387	-0.00021123	3.8739	0.0021145	3.487	0.0019032	545.8184071767366	75.231	0.6628	74.973	74.695	75.358	-0.25866					27	15	2	0	0	0	0.024523	1	8924	8924		29.15	2.4566	1	978090			33763	11695	23263	23311	38702	38702					0.07702004885732094
KNYNQQKDI	9	Unmodified	_KNYNQQKDI_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.7954711914062	2	575.796195	1149.57784	-0.15607	-8.9867E-05	0.17306	9.965E-05	0.01699	9.7829E-06	575.7960756900483	63.549	1.3163	63.549	63.301	64.617	0					79	35	4	0	0	0	0.29158	2	7436	7436;7448		76.774	27.238	1	3599200			33764	5759	23264	23312	38703;38704	38703					0.009030384952893655
KNYNQQKDI	9	Unmodified	_KNYNQQKDI_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	575.796195	1149.57784	-0.11348	-6.534E-05	-1.9201	-0.0011056	-2.0336	-0.0011709	575.7955577787864	63.872	0.69951	63.644	63.328	64.027	-0.22773	0.014276	-0.0014342	NaN	76.774	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543360			33765	5759	23264	23312							0.009030384952893655
KNYNQQKDI	9	Unmodified	_KNYNQQKDI_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	575.796195	1149.57784	-0.3314	-0.00019082	-0.62431	-0.00035947	-0.95571	-0.00055029	575.7957997383662	63.865	0.62073	63.672	63.38	64	-0.19243	0.041999	5.8048E-05	NaN	76.774	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581400			33766	5759	23264	23312							0.009030384952893655
KNYNQQKDI	9	Unmodified	_KNYNQQKDI_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	575.796195	1149.57784	-0.13105	-7.5459E-05	0.68806	0.00039618	0.55701	0.00032073	575.7958679823932	63.946	0.64786	63.688	63.425	64.073	-0.25824	0.057338	0.0015694	NaN	76.774	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	593670			33767	5759	23264	23312							0.009030384952893655
KNYRGFYN	8	Unmodified	_KNYRGFYN_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF;ENST00000463041.1_1_1:44071278-44072513:+|nuORF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3392944335938	2	531.261791	1060.50903	-0.10253	-5.447E-05	-2.6037	-0.0013833	-2.7062	-0.0014377	531.260082312796	59.073	0.48453	58.892	58.71	59.194	-0.18134					20	11	2	0	0	0	0.027866	1	6504	6504		37.159	5.2042	1	215160			33768	5598	23265	23313	38705	38705					-0.01880581013756455
KNYSNSAISVE	11	Unmodified	_KNYSNSAISVE_					0	0	0		ENST00000409003.4_2_8:119209465-119209606:-|nuORF	ENST00000409003.4_2_8:119209465-119209606:-|nuORF	ENST00000409003.4_2_8:119209465-119209606:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	607.2901611328125	2	606.298767	1210.58298	-0.37473	-0.0002272	-1.6011	-0.00097076	-1.9759	-0.001198	606.7987824359147	72.806	0.46773	72.542	72.3	72.767	-0.26479					14	10	2	0	0	0	0.024745	1	8574	8574		20.837	0	1	237760			33769	13761	23266	23314	38706	38706					-0.013887024327686959
KNYSRNNI	8	Unmodified	_KNYSRNNI_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.2806091308594	2	504.764697	1007.51484	0.28535	0.00014404	-1.6975	-0.00085683	-1.4121	-0.0007128	504.7634286213937	24.544	0.2756	24.623	24.455	24.731	0.078346					7	5	2	0	0	0	0.027866	1	1037	1037		24.203	0	1	38985			33770	7399	23267	23315	38707	38707					0.01138517497884095
KNYYFVSHDQ	10	Unmodified	_KNYYFVSHDQ_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-5|CASK	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.780029296875	3	434.20341	1299.5884	0.32646	0.00014175	-3.2714	-0.0014205	-2.945	-0.0012787	434.2019257464995	38.96	0.87268	38.734	38.483	39.356	-0.2257					47	23	3	0	0	0	0.03519	1	3317	3317		23.378	13.732	1	582840			33771	5926	23268	23316	38708	38708					-0.04940978850299871
KPAAHFLP	8	Unmodified	_KPAAHFLP_					0	0	0		nc|ENSG00000129682|Q92913-2|FGF13;nc|ENSG00000129682|Q92913-4|FGF13;nc|ENSG00000129682|Q92913-5|FGF13;ENSG00000129682|ENST00000315930|FGF13;ENSG00000102466|ENST00000376143|FGF14;nc|ENSG00000102466|Q92915-2|FGF14;nc|ENSG00000129682|Q92913-3|FGF13	nc|ENSG00000129682|Q92913-2|FGF13	nc|ENSG00000129682|Q92913-2|FGF13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.24517822265625	2	440.755613	879.496673	-0.32731	-0.00014426	-4.1838	-0.001844	-4.5111	-0.0019883	440.7537136998762	32.495	0.52267	32.507	32.221	32.743	0.011799					23	13	2	0	0	0	0.027866	1	2243	2243		44.531	16.649	1	285690			33772	2410	23269	23317	38709	38709					0.052104273138297685
KPAEKRPDE	9	Unmodified	_KPAEKRPDE_					0	0	0		ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	ENSG00000068024|ENST00000543185|HDAC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7733764648438	2	535.285463	1068.55637	-0.62118	-0.00033251	-1.7917	-0.00095905	-2.4129	-0.0012916	535.2832350574982	41.792	0.17899	41.561	41.472	41.651	-0.23029					6	4	2	0	0	0	0.024374	1	3690	3690		58.782	5.8453	1	58754			33773	1374	23270	23318	38710	38710					0.024836534665837462
KPAERQSH	8	Unmodified	_KPAERQSH_					0	0	0			REV__LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	REV__LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.77691650390625	2	476.75159	951.488627	0.24096	0.00011488	2.2075	0.0010524	2.4485	0.0011673	476.75282368559596	68.751	0.22067	68.767	68.644	68.865	0.015129					6	5	2	0	0	0	0.027866	1	8162	8162		25.45	1.2474	1	32952	+		33774	36305	23271	23319	38711	38711					0.010942483264216207
KPAESLPVI	9	Unmodified	_KPAESLPVI_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2871398925781	2	477.286943	952.559333	0.2724	0.00013001	-0.14923	-7.1226E-05	0.12317	5.8787E-05	477.28670487578586	54.408	0.96783	54.408	53.976	54.944	0					69	27	3	0	0	0	0.26966	1	5949	5949		79.713	0	1	4424800			33775	7033	23272	23320	38712	38712					0.08115528591372367
KPAESLPVI	9	Unmodified	_KPAESLPVI_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.2872314453125	2	477.286943	952.559333	0.35246	0.00016822	-0.076708	-3.6612E-05	0.27575	0.00013161	477.28673916222783	54.497	1.1796	54.346	53.886	55.065	-0.15036					78	33	3	0	0	0	0.1158	1	5937	5937		107.01	24.767	1	4284300			33776	7033	23272	23320	38713	38713					0.08115528591372367
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.7927856445312	2	563.792589	1125.57063	0.021457	1.2097E-05	-2.5547	-0.0014403	-2.5332	-0.0014282	563.79206375102	55.151	1.1327	55.151	54.689	55.822	0					156	31	7	0	0	0	0.58878	3	6088	6065;6076;6088		78.264	12.186	1	7907400			33777	8257	23273	23321	38714;38715;38716	38716					0.012863058948596517
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.79345703125	2	563.792589	1125.57063	-0.41316	-0.00023293	-1.9964	-0.0011255	-2.4095	-0.0013585	563.792359901884	55.224	1.1357	55.074	54.574	55.71	-0.15036					159	31	7	0	0	0	0.67616	1	6052	6052		68.846	14.07	1	8680700			33778	8257	23273	23321	38717	38717					0.012863058948596517
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.7930297851562	2	563.792589	1125.57063	-0.88763	-0.00050044	-1.5742	-0.00088754	-2.4619	-0.001388	563.7925776554201	54.852	1.1188	54.95	54.626	55.744	0.098015					156	30	7	0	0	0	0.50091	2	5954	5939;5954		88.177	21.748	1	8066100			33779	8257	23273	23321	38718;38719	38719					0.012863058948596517
KPAGPPGIL	9	Unmodified	_KPAGPPGIL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.2632751464844	2	425.263271	848.511988	-0.34363	-0.00014613	0.20311	8.6375E-05	-0.14052	-5.9757E-05	425.26327864068566	46.194	1.5775	46.194	45.748	47.326	0					103	43	4	0	0	0	0.062871	5	4534	4534;4543;4555;4569;4582		123.99	18.72	1	9966100			33780	2185	23274	23322	38720;38721;38722;38723;38724	38720					0.08167294111046886
KPAGPPGIL	9	Unmodified	_KPAGPPGIL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.26300048828125	2	425.263271	848.511988	-1.1304	-0.00048072	1.0383	0.00044156	-0.092084	-3.916E-05	425.26364050785514	46.306	1.479	46.155	45.611	47.09	-0.15156					105	40	4	0	0	0	0.033883	5	4527	4527;4537;4549;4562;4575		138.48	19.258	1	10297000			33781	2185	23274	23322	38725;38726;38727;38728;38729	38725					0.08167294111046886
KPAGPPGIL	9	Unmodified	_KPAGPPGIL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.263427734375	2	425.263271	848.511988	0.13652	5.8056E-05	-0.28717	-0.00012212	-0.15065	-6.4065E-05	425.26310196002817	46.169	1.375	46.221	45.724	47.099	0.051395					105	38	4	0	0	0	0.062871	5	4474	4465;4474;4486;4498;4511		123.99	18.72	1	12420000			33782	2185	23274	23322	38730;38731;38732;38733;38734	38731					0.08167294111046886
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.323974609375	2	517.32386	1032.63317	1.1431	0.00059133	-1.9138	-0.00099007	-0.77076	-0.00039873	517.3228706277799	63.83	1.3894	63.83	63.336	64.725	0					112	37	6	0	0	0	0.25842	3	7465	7465;7487;7499		93.195	55.384	1	54186000			33783	2185	23275	23323	38735;38736;38737	38735					0.11815496753706611
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.3238525390625	2	517.32386	1032.63317	-0.06651	-3.4407E-05	-0.84121	-0.00043518	-0.90772	-0.00046958	517.3234234299126	64.073	1.3977	63.822	63.372	64.769	-0.25141					111	37	6	0	0	0	0.1766	5	7471	7461;7471;7481;7493;7505		101.6	47.974	1	50875000			33784	2185	23275	23323	38738;38739;38740;38741;38742	38739					0.11815496753706611
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.323974609375	2	517.32386	1032.63317	1.2303	0.00063644	-2.182	-0.0011288	-0.95178	-0.00049238	517.3227632138137	63.803	1.4608	63.848	63.402	64.862	0.045502					107	39	5	0	0	0	0.25842	5	7379	7370;7379;7391;7403;7415		93.195	41.86	1	49047000			33785	2185	23275	23323	38743;38744;38745;38746;38747	38744					0.11815496753706611
KPAKDRKL	8	Unmodified	_KPAKDRKL_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3055725097656	2	478.306001	954.597449	-0.26156	-0.0001251	0.034725	1.6609E-05	-0.22683	-0.0001085	478.30596844199795	23.405	1.2581	23.481	23.195	24.453	0.076239					79	28	4	0	0	0	0.77775	1	911	911		60.972	4.2509	1	2754900	+		33786	27428	23276	23324	38748	38748					0.11833459296701676
KPAKKNKSQ	9	Unmodified	_KPAKKNKSQ_					0	0	0		nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1	nc|ENSG00000205571|Q16637-4|SMN1	nc|ENSG00000205571|Q16637-4|SMN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7977905273438	2	514.81419	1027.61383	-0.72366	-0.00037255	0.32806	0.00016889	-0.39559	-0.00020366	514.8142609795633	26.383	0.37941	26.465	26.249	26.629	0.081293					14	8	2	0	0	0	0.024427	1	1303	1303		34.173	14.813	1	108770			33787	8239	23277	23325	38749	38749					0.1011254046279646
KPAKTQKTSL	10	Unmodified	_KPAKTQKTSL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.3353881835938	2	551.334956	1100.65536	0.026852	1.4804E-05	-0.26507	-0.00014614	-0.23822	-0.00013134	551.3347432243113	17.633	0.37581	17.49	17.276	17.651	-0.14278					11	7	2	0	0	0	1.0447	1	184	184		40.058	8.5284	1	32106			33788	5624	23278	23326	38750	38750					0.1090567643148006
KPALFNVL	8	Unmodified	_KPALFNVL_					0	0	0		PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant;nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1	PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant	PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2775573730469	2	451.278921	900.543289	-0.08849	-3.9934E-05	0.22997	0.00010378	0.14148	6.3848E-05	451.2788689096227	66.932	0.89603	66.932	66.672	67.568	0					53	21	4	0	0	0	0.43637	1	7980	7980		92.191	17.674	1	2660600			33789	9459	23279	23327	38751	38751					0.08903867145113509
KPALFNVL	8	Unmodified	_KPALFNVL_					0	0	0		PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant;nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1	PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant	PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2773132324219	2	451.278921	900.543289	-0.093133	-4.2029E-05	0.11578	5.225E-05	0.022649	1.0221E-05	451.2788316672266	67.26	0.88708	66.971	66.665	67.552	-0.28834					61	21	4	0	0	0	0.65272	1	7995	7995		71.378	8.3995	1	2559700			33790	9459	23279	23327	38752	38752					0.08903867145113509
KPALFNVL	8	Unmodified	_KPALFNVL_					0	0	0		PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant;nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1	PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant	PBX1|p.F252Sfs*18|1|0.18|ENSG00000185630|chr1:164807593-164807593|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2777099609375	2	451.278921	900.543289	-0.0023362	-1.0543E-06	0.099704	4.4994E-05	0.097368	4.394E-05	451.27880365922806	66.999	0.90451	67.022	66.769	67.674	0.023903					47	21	3	0	0	0	0.78609	1	7923	7923		60.294	0	1	2201700			33791	9459	23279	23327	38753	38753					0.08903867145113509
KPAPAKPVA	9	Unmodified	_KPAPAKPVA_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.26153564453125	2	439.776545	877.538538	-0.068008	-2.9908E-05	0.34578	0.00015207	0.27777	0.00012216	439.7766412840182	19.799	1.0619	19.681	19.397	20.459	-0.11872					47	21	3	0	0	0	0.024427	1	465	465		51.335	29.633	1	157740			33792	7065	23280	23328	38754	38754					0.09486983002364013
KPAPKVSAA	9	Unmodified	_KPAPKVSAA_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3;TMEM181-HP1BP3|1|fusion	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7666931152344	2	434.766178	867.517802	0.025078	1.0903E-05	0.15204	6.61E-05	0.17711	7.7003E-05	434.76609756742886	19.442	0.81622	19.323	19.101	19.918	-0.11872					38	16	3	0	0	0	0.48817	2	394	394;403		60.118	5.3348	1	313890			33793	4247	23281	23329	38755;38756	38755					0.07874392622704818
KPAPRLSSP	9	Unmodified	_KPAPRLSSP_					0	0	0		nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7774353027344	2	476.782359	951.550165	-0.81135	-0.00038684	1.6114	0.00076828	0.80003	0.00038144	476.7829514344719	27.109	1.2273	27.19	26.456	27.684	0.081293					51	31	2	0	0	0	0.023239	1	1432	1432		74.255	22.92	1	1286800			33794	18780	23282	23330	38757	38757					0.07245180025711306
KPARAPPA	8	Unmodified	_KPARAPPA_					0	0	0			REV__ENSG00000008516|ENST00000336577|MMP25	REV__ENSG00000008516|ENST00000336577|MMP25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.2350769042969	2	404.245412	806.476272	-0.13161	-5.3204E-05	0.50982	0.00020609	0.3782	0.00015289	404.2454389611313	33.101	1.1366	33.107	32.589	33.726	0.0066261					74	30	4	0	0	0	0.027866	1	2285	2285		25.45	1.2474	1	1113800	+		33795	19883	23283	23331	38758	38758					0.06529256654027904
KPARAPPA	8	Unmodified	_KPARAPPA_					0	0	0			REV__ENSG00000008516|ENST00000336577|MMP25	REV__ENSG00000008516|ENST00000336577|MMP25	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	404.245412	806.476272	0.5591	0.00022601	-0.21095	-8.5275E-05	0.34815	0.00014074	404.24517859697715	33.276	1.1737	33.276	32.642	33.816	0	0.1133	0.00037331	NaN	25.45	74	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1186200	+		33796	19883	23283	23331							0.06529256654027904
KPARAPPA	8	Unmodified	_KPARAPPA_					0	0	0			REV__ENSG00000008516|ENST00000336577|MMP25	REV__ENSG00000008516|ENST00000336577|MMP25	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.245412	806.476272	2.4	0.00097021	-2.1946	-0.00088714	0.20548	8.3066E-05	404.24436713034714	33.047	1.2756	33.104	32.496	33.771	0.056572	-0.05826	-0.0012304	NaN	25.45	76	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1267200	+		33797	19883	23283	23331							0.06529256654027904
KPARPVGI	8	Unmodified	_KPARPVGI_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.25311279296875	2	419.268887	836.523222	-0.34656	-0.0001453	0.37687	0.00015801	0.030308	1.2707E-05	419.2691000116547	45.548	0.3665	45.396	45.178	45.544	-0.15156					13	10	2	0	0	0	0.027866	1	4389	4389		33.516	19.74	1	73516			33798	9951	23284	23332	38759	38759					0.09842116205186358
KPARPVGI	8	Unmodified	_KPARPVGI_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2529602050781	2	419.268887	836.523222	-0.023427	-9.8224E-06	0.49344	0.00020688	0.47001	0.00019706	419.26903819699123	45.444	0.23537	45.488	45.311	45.546	0.04388					10	6	2	0	0	0	0.027866	1	4339	4339		33.516	0	1	80978			33799	9951	23284	23332	38760	38760					0.09842116205186358
KPARPVGI	8	Unmodified	_KPARPVGI_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	419.268887	836.523222	-0.025822	-1.0826E-05	0.30817	0.00012921	0.28235	0.00011838	419.26891702531634	45.592	0.72887	45.34	45.019	45.748	-0.25252	-0.031123	-9.5959E-05	NaN	33.516	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254350			33800	9951	23284	23332							0.09842116205186358
KPASKIPAF	9	Unmodified	_KPASKIPAF_					0	0	0		ENSG00000138430|ENST00000284719|OLA1;nc|ENSG00000138430|Q9NTK5-3|OLA1	ENSG00000138430|ENST00000284719|OLA1	ENSG00000138430|ENST00000284719|OLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.75042724609375	2	479.789653	957.564752	-0.40161	-0.00019269	-3.7612	-0.0018046	-4.1629	-0.0019973	479.7880955526505	32.775	0.14919	32.781	32.701	32.85	0.0066261					5	3	2	0	0	0	0.024418	1	2290	2290		37.812	1.3648	1	41413			33801	5242	23285	23333	38761	38761					0.0842725217385123
KPATKTAEL	9	Unmodified	_KPATKTAEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.78192138671875	2	479.782025	957.549496	-0.1546	-7.4176E-05	-0.52179	-0.00025034	-0.67639	-0.00032452	479.78166100222	22.019	1.0934	21.944	21.27	22.363	-0.075296					46	22	3	0	0	0	0.26966	2	717	717;730		79.713	12.114	1	1253700			33802	6721	23286	23334	38762;38763	38762					0.06902340585986622
KPATKTAEL	9	Unmodified	_KPATKTAEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7820129394531	2	479.782025	957.549496	-0.98196	-0.00047113	-2.1118	-0.0010132	-3.0937	-0.0014843	479.78103967865775	21.864	1.1517	21.935	21.546	22.697	0.071487					43	23	2	0	0	0	0.086035	3	665	665;677;689		115.49	44.116	1	1155000			33803	6721	23286	23334	38764;38765;38766	38764					0.06902340585986622
KPATQPVK	8	Unmodified	_KPATQPVK_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.76617431640625	2	434.766178	867.517802	1.2194	0.00053013	-1.0424	-0.00045319	0.17697	7.6943E-05	434.765577568755	19.241	0.76306	19.241	18.972	19.735	0					41	15	4	0	0	0	0.83003	2	380	380;389		56.721	9.9546	1	315260			33804	10259	23287	23335	38767;38768	38767					0.07874392622704818
KPATVLSSQ	9	Unmodified	_KPATVLSSQ_					0	0	0			REV__ENST00000573379.1_1_16:11034614-11034698:+|nuORF	REV__ENST00000573379.1_1_16:11034614-11034698:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.237060546875	2	465.766374	929.518196	-1.1469	-0.00053417	1.766	0.00082255	0.61915	0.00028838	465.7666197985721	28.605	0.45707	28.605	28.362	28.82	0					16	10	2	0	0	0	0.024319	1	1665	1665		39.253	0	1	146280	+		33805	35432	23288	23336	38769	38769					0.05061767551910634
KPAVILILVL	10	Unmodified	_KPAVILILVL_					0	0	0			REV__ENSG00000163293|ENST00000295461|NIPAL1	REV__ENSG00000163293|ENST00000295461|NIPAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.818115234375	2	539.883553	1077.75255	-0.20763	-0.0001121	2.6428	0.0014268	2.4352	0.0013147	539.8853648179839	74.664	0.29332	74.388	74.265	74.558	-0.27573					10	6	3	0	0	0	0.03519	1	8821	8821		18.324	0	1	130180	+		33806	25552	23289	23337	38770	38770					0.21678690378416832
KPAWCNSID	9	Unmodified	_KPAWCNSID_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2850341796875	2	517.242209	1032.46987	0.035047	1.8128E-05	1.5329	0.0007929	1.568	0.00081102	517.2437046930607	53.059	0.39724	52.932	52.591	52.988	-0.12705					13	9	2	0	0	0	0.024523	1	5502	5502		21.96	0	1	89774	+		33807	25638	23290	23338	38771	38771					-0.04507049359654047
KPAWFRQS	8	Unmodified	_KPAWFRQS_					0	0	0		nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16	nc|ENSG00000172349|Q14005-4|IL16	nc|ENSG00000172349|Q14005-4|IL16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2637634277344	2	510.274701	1018.53485	0.13147	6.7084E-05	2.3233	0.0011855	2.4548	0.0012526	510.27530676527505	80.979	0.8156	80.773	80.343	81.158	-0.20633					41	19	3	0	0	0	0.027866	1	9732	9732		15.642	9.3292	1	177900			33808	8264	23291	23339	38772	38772					0.026323132285142492
KPCARVIV	8	Unmodified	_KPCARVIV_					0	0	0			REV__nc|ENSG00000127452|Q9NXK8-2|FBXL12	REV__nc|ENSG00000127452|Q9NXK8-2|FBXL12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.2518310546875	2	443.270573	884.526593	-0.75863	-0.00033628	-0.16475	-7.3027E-05	-0.92338	-0.00040931	443.27093580656424	45.242	0.21054	45.143	44.977	45.188	-0.099449					7	5	2	0	0	0	0.027866	1	4276	4276		13.775	0	1	70512	+		33809	22931	23292	23340	38773	38773					0.07971042987537658
KPCWWYGSY	9	Unmodified	_KPCWWYGSY_					0	0	0			REV__nc|ENSG00000074603|Q6V1X1-6|DPP8	REV__nc|ENSG00000074603|Q6V1X1-6|DPP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.8003540039062	2	595.260402	1188.50625	0.13824	8.2289E-05	-4.2812	-0.0025484	-4.1429	-0.0024661	595.2580321834225	79.673	0.5844	79.426	79.112	79.696	-0.2465					21	13	2	0	0	0	0.024323	1	9509	9509		44.117	0	1	286010	+		33810	20527	23293	23341	38774	38774					-0.08046172462945833
KPDERKPK	8	Unmodified	_KPDERKPK_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7731018066406	2	499.293091	996.571629	-0.37509	-0.00018728	-0.20701	-0.00010336	-0.5821	-0.00029064	499.2930824894361	24.633	0.62356	24.633	24.385	25.009	0					38	13	4	0	0	0	0.027866	1	1100	1100		56.721	12.604	1	414330	+		33811	27845	23294	23342	38775	38775					0.07320565054419603
KPDKQAQPN	9	Unmodified	_KPDKQAQPN_					0	0	0			REV__nc|ENSG00000078304|Q13362-3|PPP2R5C	REV__nc|ENSG00000078304|Q13362-3|PPP2R5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2911987304688	2	513.272355	1024.53016	-0.58152	-0.00029848	-0.069137	-3.5486E-05	-0.65066	-0.00033396	513.2721469117089	28.689	0.66421	28.684	28.458	29.122	-0.0042019					22	15	2	0	0	0	0.024447	1	1655	1655		40.778	10.275	1	584940	+		33812	36478	23295	23343	38776	38776					0.01887384295105221
KPDKQAQPN	9	Unmodified	_KPDKQAQPN_					0	0	0			REV__nc|ENSG00000078304|Q13362-3|PPP2R5C	REV__nc|ENSG00000078304|Q13362-3|PPP2R5C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.272355	1024.53016	-1.2456	-0.00063934	0.65234	0.00033483	-0.59327	-0.00030451	513.2724590360053	28.715	0.61887	28.715	28.53	29.149	0	0.09511	0.00053675	NaN	39.253	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613550	+		33813	36478	23295	23343							0.01887384295105221
KPDKQAQPN	9	Unmodified	_KPDKQAQPN_					0	0	0			REV__nc|ENSG00000078304|Q13362-3|PPP2R5C	REV__nc|ENSG00000078304|Q13362-3|PPP2R5C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.272355	1024.53016	-0.46931	-0.00024088	-0.2935	-0.00015064	-0.7628	-0.00039153	513.2719868107404	28.38	0.53596	28.461	28.248	28.784	0.080811	-0.15928	-0.0004342	NaN	39.253	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621830	+		33814	36478	23295	23343							0.01887384295105221
KPDLVLFLQ	9	Unmodified	_KPDLVLFLQ_					0	0	0		ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.30029296875	2	536.823692	1071.63283	0.074558	4.0024E-05	-4.3657	-0.0023436	-4.2912	-0.0023036	536.8212503582837	21.553	0.57509	21.376	21.065	21.64	-0.17721					24	11	4	0	0	0	0.024511	1	704	704		32.812	13.452	1	250300			33815	7817	23296	23344	38777	38777					0.09988077033835907
KPDLVLFLQ	9	Unmodified	_KPDLVLFLQ_					0	0	0		ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.823692	1071.63283	-1.175	-0.00063076	-8.8404	-0.0047457	-10.015	-0.0053765	536.8188124258602	21.548	0.52709	21.548	21.244	21.771	0	0.067133	-0.0027447	NaN	32.812	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149790			33816	7817	23296	23344							0.09988077033835907
KPDLVLFLQ	9	Unmodified	_KPDLVLFLQ_					0	0	0		ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.823692	1071.63283	-0.8569	-0.00046001	-9.2734	-0.0049782	-10.13	-0.0054382	536.8185827718065	21.581	0.52278	21.491	21.255	21.778	-0.090094	0.010187	-0.0032096	NaN	32.812	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146250			33817	7817	23296	23344							0.09988077033835907
KPDLVLFLQ	9	Unmodified	_KPDLVLFLQ_					0	0	0		ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.823692	1071.63283	-0.98952	-0.0005312	-9.0108	-0.0048372	-10	-0.0053684	536.8187176099406	21.468	0.52723	21.539	21.303	21.83	0.071487	0.058027	-0.0029276	NaN	32.812	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118290			33818	7817	23296	23344							0.09988077033835907
KPDLVLFLQ	9	Unmodified	_KPDLVLFLQ_					0	0	0		ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	ENSG00000168393|ENST00000305784|DTYMK	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	536.823692	1071.63283	-1.6761	-0.00089976	-2.6709	-0.0014338	-4.347	-0.0023336	536.8221382583547	21.664	0.62833	21.451	21.216	21.845	-0.2128	-0.030265	0.0038791	NaN	32.812	25	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262880			33819	7817	23296	23344							0.09988077033835907
KPDRALPI	8	Unmodified	_KPDRALPI_					0	0	0		nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-2|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-4|ARHGAP36;ENSG00000147256|ENST00000276211|ARHGAP36	nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.27923583984375	2	455.279452	908.544351	2.1194	0.00096494	-2.1662	-0.00098621	-0.046719	-2.127E-05	455.27831379616254	24.473	0.73893	24.292	24.028	24.767	-0.18089					34	16	3	0	0	0	0.77775	1	1057	1057		60.972	7.6205	1	948260			33820	5953	23297	23345	38778	38778					0.08642081514040001
KPDSAFAMLL	10	Unmodified	_KPDSAFAMLL_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.9130859375	2	546.791535	1091.56852	-0.6291	-0.00034399	3.8947	0.0021296	3.2655	0.0017856	546.7934430952926	27.204	0.29163	27.035	26.851	27.142	-0.16816					10	6	2	0	0	0	0.03519	1	1488	1488		15.642	0	1	81949			33821	5443	23298	23346	38779	38779					0.026395538854103506
KPEDGRDI	8	Unmodified	_KPEDGRDI_					0	0	0		ENST00000462262.1_1_21:30969037-31002873:+|nuORF	ENST00000462262.1_1_21:30969037-31002873:+|nuORF	ENST00000462262.1_1_21:30969037-31002873:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.237981	928.461409	-0.30273	-0.00014084	2.0388	0.00094854	1.7361	0.00080769	465.2388435214024	75.528	0.36133	75.284	75.116	75.477	-0.24455					18	9	2	0	0	0	0.027866	1	9209	9209		21.96	0	1	581080			33822	14702	23299	23347	38780	38780					-0.005682800046201919
KPEEKSSAND	10	Unmodified	_KPEEKSSAND_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7978515625	2	552.762017	1103.50948	-1.1455	-0.00063321	1.4392	0.00079552	0.29363	0.00016231	552.7637107694578	53.313	0.47178	53.165	52.948	53.42	-0.14723					13	12	2	0	0	0	0.03519	1	5708	5708		28.081	5.039	1	102330	+		33823	19737	23300	23348	38781	38781					-0.0381325087521418
KPEEQRKTL	9	Unmodified	_KPEEQRKTL_					0	0	0		ENSG00000134697|ENST00000373062|GNL2;ENST00000479255.1_1_1:38032458-38033975:-|nuORF	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.8216552734375	2	564.822212	1127.62987	2.6322	0.0014867	-2.7371	-0.001546	-0.10497	-5.9288E-05	564.8205330124615	18.112	0.53902	18.112	17.892	18.431	0					26	10	4	0	0	0	0.12602	2	249	249;259		104.75	25.034	1	282960			33824	4819	23301	23349	38782;38783	38782					0.07116201909047959
KPEEQRKTL	9	Unmodified	_KPEEQRKTL_					0	0	0		ENSG00000134697|ENST00000373062|GNL2;ENST00000479255.1_1_1:38032458-38033975:-|nuORF	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8224487304688	2	564.822212	1127.62987	-0.037935	-2.1427E-05	0.012555	7.0915E-06	-0.02538	-1.4335E-05	564.8220873901749	18.31	0.6403	18.179	17.908	18.549	-0.13147					25	12	3	0	0	0	0.1158	1	262	262		107.01	16.638	1	234830			33825	4819	23301	23349	38784	38784					0.07116201909047959
KPEEQRQAL	9	Unmodified	_KPEEQRQAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.7984619140625	2	549.798737	1097.58292	-0.83148	-0.00045715	0.51276	0.00028192	-0.31872	-0.00017523	549.7990097716544	21.943	1.2651	21.943	21.537	22.803	0					92	26	6	0	0	0	0.033448	3	719	708;719;732		138.83	37.225	1	3033200			33826	18548	23302	23350	38785;38786;38787	38786					0.03803342357900874
KPEEQRQAL	9	Unmodified	_KPEEQRQAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7987670898438	2	549.798737	1097.58292	-0.82568	-0.00045396	0.49447	0.00027186	-0.33121	-0.0001821	549.7990018273978	21.991	1.457	21.916	21.418	22.875	-0.075296					105	30	5	0	0	0	0.014034	2	706	706;728		166.68	23.572	1	3066200			33827	18548	23302	23350	38788;38789	38788					0.03803342357900874
KPEGYKPD	8	Unmodified	_KPEGYKPD_					0	0	0			REV__ENSG00000185105|ENST00000409745|MYADML2	REV__ENSG00000185105|ENST00000409745|MYADML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.6066589355469	2	467.23745	932.460347	-0.077133	-3.6039E-05	-0.91582	-0.0004279	-0.99295	-0.00046394	467.2368845847322	101	0.87305	100.82	100.6	101.47	-0.17178					27	21	2	0	0	0	0.027866	1	12514	12514		51.335	8.9393	1	96868	+		33828	27736	23303	23351	38790	38790					-0.008584943735286288
KPEHGVRSV	9	Unmodified	_KPEHGVRSV_					0	0	0			REV__ENSG00000049239|ENST00000377403|H6PD	REV__ENSG00000049239|ENST00000377403|H6PD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7142028808594	2	504.78289	1007.55123	-0.57015	-0.0002878	2.2543	0.0011379	1.6841	0.00085012	504.7840264796044	28.844	0.51709	28.675	28.424	28.941	-0.16897					17	11	2	0	0	0	0.024457	1	1750	1750		29.15	14.285	1	125040	+		33829	20144	23304	23352	38791	38791					0.0477539439461907
KPEHRPKL	8	Unmodified	_KPEHRPKL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7799377441406	2	502.803626	1003.5927	0.12733	6.4021E-05	-1.4289	-0.00071848	-1.3016	-0.00065446	502.80273108609293	24.128	0.40642	24.207	23.958	24.364	0.078344					14	8	2	0	0	0	0.027866	1	959	959		31.955	7.7521	1	21462	+		33830	25256	23305	23353	38792	38792					0.09104575153935457
KPELPSGKKN	10	Unmodified	_KPELPSGKKN_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3185424804688	2	549.319306	1096.62406	-0.16306	-8.9571E-05	-2.4286	-0.0013341	-2.5917	-0.0014237	549.3178505980146	99.7	0.66833	99.695	99.343	100.01	-0.0050812					40	15	4	0	0	0	1.0719	1	12685	12685		36.447	6.129	1	375560			33831	3925	23306	23354	38793	38793					0.0796110339738334
KPEMKVNFLK	10	Unmodified	_KPEMKVNFLK_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.5630798339844	3	411.905648	1232.69511	0.060805	2.5046E-05	3.2439	0.0013362	3.3047	0.0013612	411.90669783538016	33.141	0.44309	32.941	32.69	33.133	-0.20019					24	10	3	0	0	0	0.03519	1	2316	2316		25.126	3.4402	1	191180			33832	10214	23307	23355	38794	38794					0.0880748011054493
KPEQRPSL	8	Unmodified	_KPEQRPSL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;ENST00000580540.1_1_17:17720525-17721213:-|nuORF;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7721862792969	2	477.771991	953.529429	0.36799	0.00017582	-0.64723	-0.00030923	-0.27924	-0.00013341	477.7716033006857	24.588	0.68535	24.667	24.319	25.005	0.078344					44	14	4	0	0	0	0.56592	1	1034	1034		79.451	5.196	1	571630			33833	1476;13528	23308	23356	38795	38795					0.05080589646047429
KPEQRPSL	8	Unmodified	_KPEQRPSL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;ENST00000580540.1_1_17:17720525-17721213:-|nuORF;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	477.771991	953.529429	-0.87232	-0.00041677	0.92353	0.00044124	0.051207	2.4465E-05	477.7723004519703	24.75	0.7596	24.703	24.264	25.024	-0.047148	0.012451	0.00088609	NaN	79.451	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573460			33834	1476;13528	23308	23356							0.05080589646047429
KPERACECP	9	Unmodified	_KPERACECP_					0	0	0		nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2	nc|ENSG00000137841|Q00722-3|PLCB2	nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.76318359375	2	516.733694	1031.45284	-0.35217	-0.00018198	-0.11184	-5.7792E-05	-0.46401	-0.00023977	516.7336924779005	37.524	0.66925	37.524	37.233	37.902	0					38	18	4	0	0	0	0.024541	1	3111	3111		10.265	0	1	783950			33835	5166	23309	23357	38796	38796					-0.06163293237113976
KPERSFEIL	9	Unmodified	_KPERSFEIL_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8158569335938	2	559.813856	1117.61316	0.27362	0.00015318	2.6498	0.0014834	2.9234	0.0016366	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.4752	1	9815	9815		60.972	4.2509	1	35108000			33836	3681	23310	23358	38797	38797					0.05905701023107213
KPESFSKQ	8	Unmodified	_KPESFSKQ_					0	0	0		ENSG00000164600|ENST00000297142|NEUROD6	ENSG00000164600|ENST00000297142|NEUROD6	ENSG00000164600|ENST00000297142|NEUROD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7513732910156	2	475.750724	949.486896	0.90553	0.00043081	0.57267	0.00027245	1.4782	0.00070325	475.7507503419458	20.388	0.78266	20.192	19.947	20.73	-0.19577					37	15	4	0	0	0	0.845	1	538	538		55.504	4.1688	1	308890			33837	7297	23311	23359	38798	38798					0.010131945178159185
KPESFSKQ	8	Unmodified	_KPESFSKQ_					0	0	0		ENSG00000164600|ENST00000297142|NEUROD6	ENSG00000164600|ENST00000297142|NEUROD6	ENSG00000164600|ENST00000297142|NEUROD6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.750724	949.486896	0.31055	0.00014775	1.5363	0.00073091	1.8469	0.00087865	475.7510874283901	20.295	0.73015	20.128	19.909	20.639	-0.16774	-0.032326	0.00059233	NaN	55.504	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276670			33838	7297	23311	23359							0.010131945178159185
KPESRRLK	8	Unmodified	_KPESRRLK_					0	0	0		ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7664489746094	2	507.314358	1012.61416	-0.5185	-0.00026304	1.8978	0.00096278	1.3793	0.00069974	507.81657283814036	36.213	0.10138	36.251	36.166	36.267	0.038044					4	2	2	0	0	0	0.027866	1	2790	2790		74.255	20.904	1	49087			33839	8691	23312	23360	38799	38799					0.108359601826578
KPEVNQKL	8	Unmodified	_KPEVNQKL_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7926330566406	2	478.282192	954.549831	-0.48015	-0.00022965	-0.61923	-0.00029617	-1.0994	-0.00052582	478.2815837040114	48.615	0.74183	48.514	48.288	49.029	-0.1008					29	19	3	0	0	0	0.027866	1	4913	4913		49.442	27.482	1	330090			33840	5213	23313	23361	38800	38800					0.07073760305854648
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3114624023438	2	575.311146	1148.60774	-1.6427	-0.00094508	1.3076	0.00075227	-0.33514	-0.00019281	575.3116934209417	60.749	1.0037	60.749	60.33	61.334	0					75	26	4	0	0	0	0.1587	2	7000	7000;7011		126.24	16.123	1	3691700			33841	3635	23314	23362	38801;38802	38801					0.039379774406370416
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	575.311146	1148.60774	-0.43903	-0.00025258	0.087297	5.0223E-05	-0.35173	-0.00020235	575.311027768969	61.021	1.038	60.807	60.273	61.311	-0.21339	0.047809	-0.00088568	NaN	126.24	78	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3824400			33842	3635	23314	23362							0.039379774406370416
KPFLKLANQ	9	Unmodified	_KPFLKLANQ_					0	0	0			REV__nc|ENSG00000203705|Q17R31-4|TATDN3	REV__nc|ENSG00000203705|Q17R31-4|TATDN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8079223632812	2	529.821484	1057.62842	-0.60122	-0.00031854	1.7974	0.00095231	1.1962	0.00063377	529.822909761592	73.686	0.18554	73.415	73.313	73.499	-0.27126					9	4	3	0	0	0	0.024541	1	8953	8953		11.511	0	1	523490	+		33843	28538	23315	23363	38803	38803					0.10190612610927019
KPFLNIIKP	9	Unmodified	_KPFLNIIKP_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3117065429688	2	535.342052	1068.66955	0.47539	0.0002545	-0.6475	-0.00034663	-0.1721	-9.2133E-05	535.3416166209593	59.239	0.48573	59.239	59.035	59.52	0					30	12	3	0	0	0	0.023635	1	6753	6753		47.657	12.505	1	557880			33844	2823	23316	23364	38804	38804					0.13796373650416172
KPFLNIIKP	9	Unmodified	_KPFLNIIKP_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3118896484375	2	535.342052	1068.66955	0.51241	0.00027432	-0.18901	-0.00010119	0.3234	0.00017313	535.3418070987304	59.494	1.0294	59.293	59.063	60.093	-0.20016					41	27	3	0	0	0	0.023817	1	6751	6751		51.335	1.8939	1	579100			33845	2823	23316	23364	38805	38805					0.13796373650416172
KPFLNIIKP	9	Unmodified	_KPFLNIIKP_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3121948242188	2	535.342052	1068.66955	-0.25677	-0.00013746	0.53624	0.00028707	0.27947	0.00014961	535.3420550866497	59.143	0.54874	59.229	58.991	59.54	0.085682					33	14	3	0	0	0	0.024021	1	6687	6687		58.782	0	1	347180			33846	2823	23316	23364	38806	38806					0.13796373650416172
KPFLNIIKP	9	Unmodified	_KPFLNIIKP_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.342052	1068.66955	0.31177	0.0001669	-0.38514	-0.00020618	-0.073374	-3.928E-05	535.3416662970578	59.437	0.5654	59.24	59.009	59.575	-0.19742	0.0089847	-0.00019573	NaN	47.657	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575500			33847	2823	23316	23364							0.13796373650416172
KPFLNIIKP	9	Unmodified	_KPFLNIIKP_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.342052	1068.66955	0.099298	5.3158E-05	-0.16796	-8.9917E-05	-0.068664	-3.6759E-05	535.3417939603794	59.335	0.59964	59.154	58.911	59.511	-0.18133	-0.077392	3.6795E-05	NaN	47.657	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526080			33848	2823	23316	23364							0.13796373650416172
KPFLNIIKP	9	Unmodified	_KPFLNIIKP_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.342052	1068.66955	-0.146	-7.8159E-05	-0.065368	-3.4994E-05	-0.21137	-0.00011315	535.3419097472572	59.48	0.4856	59.231	59.01	59.495	-0.24842	0.00044184	0.00014664	NaN	47.657	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	639280			33849	2823	23316	23364							0.13796373650416172
KPFLQELHS	9	Unmodified	_KPFLQELHS_					0	0	0			REV__ENST00000366510.3_1_1:246929416-246930543:+|nuORF	REV__ENST00000366510.3_1_1:246929416-246930543:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7985229492188	2	549.800749	1097.58694	-0.82567	-0.00045396	-3.1639	-0.0017395	-3.9896	-0.0021935	549.7990018273978	21.991	1.457	21.916	21.418	22.875	-0.075296					105	30	5	0	0	0	0.016758	1	715	715		153.04	18.225	1	3066200	+		33850	30974	23317	23365	38807	38807					0.04205431851596586
KPFQEAQS	8	Unmodified	_KPFQEAQS_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.2625732421875	2	467.735074	933.455596	0.10206	4.7739E-05	3.5782	0.0016736	3.6802	0.0017214	467.7366507043114	50.832	0.29998	50.683	50.561	50.861	-0.14916					12	8	2	0	0	0	0.027866	1	5330	5330		12.207	1.3413	1	140510			33851	8217	23318	23366	38808	38808					-0.013793785162874883
KPFQPELPK	9	Unmodified	_KPFQPELPK_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.2928466796875	2	542.313492	1082.61243	-1.5313	-0.00083042	-2.9322	-0.0015902	-4.4635	-0.0024206	542.3111175275102	39.699	0.24636	39.723	39.562	39.808	0.023727					11	6	2	0	0	0	0.024344	1	3377	3377		45.972	3.5761	1	146050			33852	6183	23319	23367	38809	38809					0.07442906374035374
KPGATPPH	8	Unmodified	_KPGATPPH_					0	0	0			REV__ENSG00000132874|ENST00000255226|SLC14A2	REV__ENSG00000132874|ENST00000255226|SLC14A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.23748779296875	2	402.72177	803.428987	0.58593	0.00023597	3.5758	0.00144	4.1617	0.001676	402.72327137041134	31.623	3.3455	31.623	29.26	32.606	0					127	82	3	0	0	0	0.027866	1	1848	1848		44.117	24.757	1	368790	+		33853	23327	23320	23368	38810	38810					0.019409773830375343
KPGATPPH	8	Unmodified	_KPGATPPH_					0	0	0			REV__ENSG00000132874|ENST00000255226|SLC14A2	REV__ENSG00000132874|ENST00000255226|SLC14A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	402.72177	803.428987	0.41825	0.00016844	2.6208	0.0010555	3.0391	0.0012239	402.7226775106896	31.5	0.2958	31.259	31.073	31.369	-0.24109	-0.16487	-0.00068963	NaN	44.117	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36638	+		33854	23327	23320	23368							0.019409773830375343
KPGGLSLRA	9	Unmodified	_KPGGLSLRA_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7557373046875	2	449.777077	897.5396	0.073627	3.3116E-05	-0.18667	-8.3958E-05	-0.11304	-5.0842E-05	449.77686396365743	19.969	0.57584	19.969	19.6	20.176	0					20	11	2	0	0	0	0.024447	1	487	487		8.6937	0	1	70434			33855	7903	23321	23369	38811	38811					0.08673197371274455
KPGIWREISVC	11	Unmodified	_KPGIWREISVC_					0	0	0		ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	ENSG00000197329|ENST00000358912|PELI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	644.3500366210938	2	644.34754	1286.68053	2.0421	0.0013158	1.3564	0.00087399	3.3985	0.0021898	644.3482775431247	110.37	0.78791	110.37	110.02	110.81	0					74	23	5	0	0	0	1.0592	1	14046	14046		22.58	4.3176	1	637790			33856	9983	23322	23370	38812	38812					0.04865407962392965
KPGKILPITV	10	Unmodified	_KPGKILPITV_					0	0	0			REV__ENSG00000081026|ENST00000307546|MAGI3	REV__ENSG00000081026|ENST00000307546|MAGI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7140502929688	2	533.35516	1064.69577	-0.043949	-2.344E-05	-0.23092	-0.00012316	-0.27487	-0.00014661	533.3549173906704	86.195	0.43655	86.058	85.832	86.268	-0.13734					12	9	2	0	0	0	0.03519	1	10436	10436		14.865	1.4108	1	35802	+		33857	20671	23323	23371	38813	38813					0.1660064282186795
KPGLILVATP	10	Unmodified	_KPGLILVATP_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8158264160156	2	504.826235	1007.63792	0.73114	0.0003691	-1.1226	-0.0005667	-0.39143	-0.0001976	504.8255660358195	68.126	0.52821	67.871	67.62	68.148	-0.25517					18	12	2	0	0	0	0.03519	1	7880	7880		19.997	6.5427	1	136390	+		33858	22872	23324	23372	38814	38814					0.13440380896463466
KPGMEGDQGP	10	Unmodified	_KPGMEGDQGP_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.225341796875	2	508.229299	1014.44404	0.3812	0.00019374	-1.9221	-0.00097686	-1.5409	-0.00078312	508.22743412680103	106.09	3.2101	105.93	104.09	107.3	-0.16132					198	123	3	0	0	0	0.91678	1	13254	13254		52.937	8.8199	1	202260	+		33859	20165	23325	23373	38815	38815					-0.06259943601924078
KPGPPVLSS	9	Unmodified	_KPGPPVLSS_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2573547363281	2	441.258185	880.501818	0.50532	0.00022298	-3.2634	-0.00144	-2.758	-0.001217	441.2566011431722	18.076	0.34337	17.944	17.762	18.105	-0.13147					15	6	3	0	0	0	0.94809	1	232	232		29.15	3.6994	1	80433			33860	3304	23326	23374	38816	38816					0.056786863857951175
KPGPVGPEL	9	Unmodified	_KPGPVGPEL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.2583923339844	2	447.258185	892.501818	0.33268	0.00014879	-0.15961	-7.1385E-05	0.17308	7.741E-05	447.25799247253207	42.392	1.6082	42.392	41.542	43.15	0					101	45	3	0	0	0	0.17822	2	3904	3904;3917		93.195	29.889	1	2485000			33861	6241	23327	23375	38817;38818	38817					0.05126686385801804
KPGPVGPEL	9	Unmodified	_KPGPVGPEL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.2583923339844	2	447.258185	892.501818	0.14669	6.5608E-05	0.60404	0.00027016	0.75073	0.00033577	447.2581201492551	42.514	1.5786	42.382	41.565	43.144	-0.1322					111	44	5	0	0	0	0.27161	1	3922	3922		79.451	18.479	1	2404300			33862	6241	23327	23375	38819	38819					0.05126686385801804
KPGPVGPEL	9	Unmodified	_KPGPVGPEL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.25860595703125	2	447.258185	892.501818	0.03444	1.5404E-05	0.28151	0.00012591	0.31595	0.00014131	447.25817951167625	42.464	1.6621	42.49	41.673	43.335	0.026012					112	46	4	0	0	0	0.082191	1	3865	3865		116.9	26.127	1	2406700			33863	6241	23327	23375	38820	38820					0.05126686385801804
KPGPVPVPGPT	11	Unmodified	_KPGPVPVPGPT_					0	0	0			REV__ENST00000510863.1_1_4:77028861-77033669:+|nuORF	REV__ENST00000510863.1_1_4:77028861-77033669:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3034057617188	2	523.305667	1044.59678	-0.97748	-0.00051152	-2.8341	-0.0014831	-3.8115	-0.0019946	523.3040834261025	89.7	0.55897	89.537	89.215	89.774	-0.1626					23	12	2	0	0	0	1.0017	1	10947	10947		36.447	2.9312	1	949050	+		33864	25060	23328	23376	38821	38821					0.0762661985700106
KPGQERDRSK	10	Unmodified	_KPGQERDRSK_					0	0	0			REV__ENST00000529924.6_2_11:117857829-117857973:+|nuORF	REV__ENST00000529924.6_2_11:117857829-117857973:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.5721740722656	3	400.886304	1199.63708	-1.3478	-0.0005403	-3.7529	-0.0015045	-5.1007	-0.0020448	400.8848293880444	33.466	0.67424	33.3	32.958	33.632	-0.16565					21	16	2	0	0	0	0.03519	1	2339	2339		27.644	0	1	136370	+		33865	34519	23329	23377	38822	38822					0.04524934509436207
KPGQSIRE	8	Unmodified	_KPGQSIRE_					0	0	0			REV__ENSG00000101751|ENST00000579534|POLI	REV__ENSG00000101751|ENST00000579534|POLI	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.75604248046875	2	457.756341	913.498129	-0.73216	-0.00033515	-1.1413	-0.00052245	-1.8735	-0.0008576	457.75630284194165	20.632	2.1306	20.632	19.689	21.819	0					121	43	5	0	0	0	0.78825	1	575	575		60.118	5.3419	1	8141900	+		33866	21254	23330	23378	38823	38823					0.03792016611953386
KPGQSIRE	8	Unmodified	_KPGQSIRE_					0	0	0			REV__ENSG00000101751|ENST00000579534|POLI	REV__ENSG00000101751|ENST00000579534|POLI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7557373046875	2	457.756341	913.498129	-0.30544	-0.00013982	-1.6436	-0.00075237	-1.949	-0.00089218	457.75606310955686	20.787	2.3559	20.682	19.932	22.287	-0.10477					122	48	5	0	0	0	0.80469	1	566	566		58.782	0.97068	1	10305000	+		33867	21254	23330	23378	38824	38824					0.03792016611953386
KPGRKDTI	8	Unmodified	_KPGRKDTI_					0	0	0		ENSG00000188316|ENST00000341276|ENO4	ENSG00000188316|ENST00000341276|ENO4	ENSG00000188316|ENST00000341276|ENO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.755859375	2	457.774534	913.534515	-0.28835	-0.000132	-0.66711	-0.00030538	-0.95545	-0.00043738	457.7741104794373	21.127	0.67838	21.037	20.675	21.354	-0.090092					26	13	4	0	0	0	0.027866	1	577	577		44.117	0	1	154400			33868	9708	23331	23379	38825	38825					0.07428893508654255
KPGRKGISL	9	Unmodified	_KPGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.3056640625	2	478.306001	954.597449	0.22711	0.00010863	-0.70825	-0.00033876	-0.48114	-0.00023013	478.30560724982615	23.502	0.96065	23.502	23.206	24.166	0					63	22	4	0	0	0	0.26966	3	921	921;944;955		79.713	24.208	1	3595300			33869	3289	23332	23380	38826;38827;38828	38826					0.11833459296701676
KPGRKGISL	9	Unmodified	_KPGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.3060302734375	2	478.306001	954.597449	-0.33574	-0.00016059	-0.1687	-8.0689E-05	-0.50444	-0.00024128	478.3058832415604	23.468	1.228	23.408	23.111	24.339	-0.06086					77	28	4	0	0	0	0.23085	4	904	904;915;926;939		84.916	19.112	1	2936200			33870	3289	23332	23380	38829;38830;38831;38832	38829					0.11833459296701676
KPGRPFKICP	10	Unmodified	_KPGRPFKICP_					0	0	0			REV__ENSG00000179841|ENST00000394718|AKAP5	REV__ENSG00000179841|ENST00000394718|AKAP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.7687377929688	2	571.828786	1141.64302	0.72982	0.00041733	-1.6858	-0.00096399	-0.95599	-0.00054666	571.8278773379952	83.309	0.12915	83.097	83.006	83.135	-0.21159					4	2	2	0	0	0	0.03519	1	10029	10029		27.882	4.3595	1	24386	+		33871	27295	23333	23381	38833	38833					0.07786361487433169
KPGSLTQAL	9	Unmodified	_KPGSLTQAL_					0	0	0		ENST00000470731.5_1_7:2598728-2641152:+|nuORF;nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7558898925781	2	457.768917	913.523281	-0.57583	-0.0002636	-0.60282	-0.00027595	-1.1786	-0.00053955	457.7686286581709	20.407	1.6438	20.407	19.6	21.244	0					64	33	4	0	0	0	0.023417	1	563	563		58.782	0	1	301110			33872	2748	23334	23382	38834	38834					0.06306071414508096
KPGTQGHTKN	10	Unmodified	_KPGTQGHTKN_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.28369140625	2	534.283254	1066.55196	-0.42516	-0.00022716	2.2108	0.0011812	1.7856	0.00095404	534.2843604425483	107.7	0.27035	107.71	107.63	107.9	0.0033951					25	13	2	0	0	0	1.0447	1	13727	13727		40.058	2.8991	1	3895000			33873	4811	23335	23383	38835	38835					0.021341890436588073
KPGVPQEP	8	Unmodified	_KPGVPQEP_					0	0	0		ENSG00000125826|ENST00000356286|RBCK1;nc|ENSG00000125826|Q9BYM8-4|RBCK1;ENST00000382181.2_2_20:389382-402830:+|nuORF;nc|ENSG00000125826|Q9BYM8-3|RBCK1	ENSG00000125826|ENST00000356286|RBCK1	ENSG00000125826|ENST00000356286|RBCK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.26300048828125	2	426.23471	850.454868	-1.0085	-0.00042987	2.1218	0.00090439	1.1133	0.00047452	426.2355918450651	38.04	0.41125	37.957	37.883	38.294	-0.082512					17	11	2	0	0	0	0.027866	1	3141	3141		17.365	0	1	140200			33874	4144	23336	23384	38836	38836					0.023658268346594014
KPHFMALHC	9	Unmodified	_KPHFMALHC_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.2853393554688	2	542.264964	1082.51538	-0.8199	-0.0004446	2.6041	0.0014121	1.7842	0.00096752	542.2662602389324	22.308	0.46385	22.122	21.906	22.369	-0.18539					20	9	3	0	0	0	0.024517	1	798	798		19.36	0	1	145980			33875	1382	23337	23385	38837	38837					-0.02258102378254989
KPHFMALHC	9	Unmodified	_KPHFMALHC_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.264964	1082.51538	0.033295	1.8055E-05	2.2368	0.0012129	2.2701	0.001231	542.2660990409173	22.124	0.42545	21.935	21.676	22.102	-0.18894	-0.093934	-0.00012668	NaN	12.959	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127730			33876	1382	23337	23385							-0.02258102378254989
KPHHFLLG	8	Unmodified	_KPHHFLLG_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.7561950683594	2	474.774337	947.534121	1.3879	0.00065893	3.8512	0.0018284	5.239	0.0024874	474.77619178664656	23.213	0.36602	23.021	22.758	23.124	-0.19117					14	7	3	0	0	0	0.027866	1	852	852		21.702	0	1	76066			33877	9889	23338	23386	38838	38838					0.058255185794678255
KPHLEGAAF	9	Unmodified	_KPHLEGAAF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.26123046875	2	485.261259	968.507966	-0.89577	-0.00043468	0.95202	0.00046198	0.056251	2.7296E-05	485.26173125937294	36.319	0.93266	36.319	35.994	36.927	0					80	25	4	0	0	0	0.16468	2	2886	2886;2900		96.19	30.387	1	11776000			33878	5147	23339	23387	38839;38840	38839					0.022452046173157214
KPHLEGAAF	9	Unmodified	_KPHLEGAAF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2613220214844	2	485.261259	968.507966	-1.0951	-0.0005314	1.1411	0.00055374	0.046022	2.2332E-05	485.2618280084461	36.164	0.90027	36.121	35.83	36.73	-0.042454					76	24	4	0	0	0	0.19099	1	2846	2846		90.37	29.398	1	12892000			33879	5147	23339	23387	38841	38841					0.022452046173157214
KPHLEGAAF	9	Unmodified	_KPHLEGAAF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2616271972656	2	485.261259	968.507966	-0.86304	-0.0004188	1.0418	0.00050554	0.17875	8.674E-05	485.26176877566513	36.282	0.92704	36.32	35.997	36.924	0.03804					83	25	4	0	0	0	0.14024	3	2802	2802;2818;2831		101.6	30.305	1	11812000			33880	5147	23339	23387	38842;38843;38844	38842					0.022452046173157214
KPHLLAKP	8	Unmodified	_KPHLLAKP_					0	0	0			REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2482604980469	2	452.292362	902.570172	-0.55966	-0.00025313	1.2276	0.00055524	0.66795	0.00030211	452.2924927656182	25.543	0.45751	25.509	25.351	25.809	-0.034397					13	10	2	0	0	0	0.027866	1	1205	1205		13.775	0	1	36847	+		33881	30302	23340	23388	38845	38845					0.11498975756319396
KPIAHHLL	8	Unmodified	_KPIAHHLL_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000484201.5_1_1:114440516-114447658:-|nuORF	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2685852050781	2	464.789987	927.565421	-0.79253	-0.00036836	1.544	0.00071764	0.75148	0.00034928	464.7906288300871	38.175	0.71442	38.093	37.777	38.492	-0.082512					31	19	2	0	0	0	0.027866	1	3214	3214		8.8223	0	1	165670			33882	4774	23341	23389	38846	38846					0.09874091613551172
KPIDRGISN	9	Unmodified	_KPIDRGISN_					0	0	0			REV__ENSG00000169288|ENST00000315567|MRPL1	REV__ENSG00000169288|ENST00000315567|MRPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2822265625	2	500.282723	998.550893	0.38192	0.00019107	0.43332	0.00021678	0.81524	0.00040785	500.283099602802	102.6	1.571	102.47	101.18	102.75	-0.12931					58	36	4	0	0	0	0.99726	1	12727	12727		20.947	0.95016	1	697070	+		33883	26347	23342	23390	38847	38847					0.05155974674767094
KPIEMNRDA	9	Unmodified	_KPIEMNRDA_					0	0	0			REV__nc|ENSG00000163565|Q16666-8|IFI16	REV__nc|ENSG00000163565|Q16666-8|IFI16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7371215820312	2	537.274041	1072.53353	1.0529	0.00056569	-4.1534	-0.0022315	-3.1005	-0.0016658	537.2716140851041	17.388	0.25081	17.234	17.057	17.308	-0.15403					7	4	2	0	0	0	0.024541	1	181	181		11.511	4.7755	1	42738	+		33884	25595	23343	23391	38848	38848					0.00016311077433783794
KPIEMNRDA	9	Unmodified	_KPIEMNRDA_					0	0	0			REV__nc|ENSG00000163565|Q16666-8|IFI16	REV__nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.274041	1072.53353	3.0242	0.0016248	-4.7155	-0.0025335	-1.6913	-0.00090868	537.2710950677823	17.226	0.2472	17.226	17.102	17.349	0	0.032249	-0.0016382	NaN	11.511	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23451	+		33885	25595	23343	23391							0.00016311077433783794
KPIEMNRDA	9	Unmodified	_KPIEMNRDA_					0	0	0			REV__nc|ENSG00000163565|Q16666-8|IFI16	REV__nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.274041	1072.53353	-0.014498	-7.7896E-06	-2.3922	-0.0012853	-2.4067	-0.0012931	537.2725392694489	17.315	0.19161	17.172	17.084	17.276	-0.14278	-0.020865	0.00085829	NaN	11.511	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14241	+		33886	25595	23343	23391							0.00016311077433783794
KPIEQLLGF	9	Unmodified	_KPIEQLLGF_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.8079223632812	2	522.808042	1043.60153	-0.16969	-8.8715E-05	-0.032431	-1.6955E-05	-0.20212	-0.00010567	522.8074784054922	72.227	0.59268	72.227	71.94	72.533	0					49	14	5	0	0	0	0.34489	1	8782	8782		69.628	11.816	1	1838800			33887	7537	23344	23392	38849	38849					0.08147503999771288
KPIEQLLGF	9	Unmodified	_KPIEQLLGF_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.8080444335938	2	522.808042	1043.60153	0.52538	0.00027467	-1.3777	-0.00072029	-0.85235	-0.00044562	522.8066348973312	72.567	1.0067	72.286	71.62	72.627	-0.28124					67	25	5	0	0	0	0.34489	1	8801	8801		69.628	16.276	1	1920400			33888	7537	23344	23392	38850	38850					0.08147503999771288
KPIEQLLGF	9	Unmodified	_KPIEQLLGF_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3251953125	2	522.808042	1043.60153	0.58025	0.00030336	-1.412	-0.0007382	-0.83174	-0.00043484	522.8065815654322	72.298	0.84602	72.308	71.765	72.611	0.0097733					56	21	5	0	0	0	0.023473	1	8700	8700		65.465	12.529	1	1978200			33889	7537	23344	23392	38851	38851					0.08147503999771288
KPIHFLVE	8	Unmodified	_KPIHFLVE_					0	0	0		ENST00000381163.7_1_X:2799867-2799996:+|nuORF	ENST00000381163.7_1_X:2799867-2799996:+|nuORF	ENST00000381163.7_1_X:2799867-2799996:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.78204345703125	2	491.789653	981.564752	0.4639	0.00022814	1.5059	0.00074057	1.9698	0.00096871	491.79031934506787	78.54	0.61955	78.348	78.096	78.716	-0.1921					23	14	2	0	0	0	0.027866	1	9663	9663		31.955	3.7006	1	183970			33890	13332	23345	23393	38852	38852					0.07323252173853234
KPIIPKAEP	9	Unmodified	_KPIIPKAEP_					0	0	0		ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.28167724609375	2	496.810585	991.606617	0.14751	7.3283E-05	-0.081104	-4.0293E-05	0.066403	3.299E-05	496.81040817180684	82.176	0.51436	81.995	81.773	82.287	-0.18079					18	11	2	0	0	0	0.024405	1	9876	9876		35.618	0	1	174010			33891	6107	23346	23394	38853	38853					0.1104780786236006
KPIIPKAEP	9	Unmodified	_KPIIPKAEP_					0	0	0		ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.810585	991.606617	-0.95709	-0.00047549	0.92602	0.00046005	-0.031075	-1.5439E-05	496.81088104272544	82.117	0.60557	81.977	81.785	82.39	-0.14014	0.0033309	0.00054527	NaN	35.618	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139450			33892	6107	23346	23394							0.1104780786236006
KPIKDEFGT	9	Unmodified	_KPIKDEFGT_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2927856445312	2	517.779482	1033.54441	-0.41907	-0.00021699	3.8246	0.0019803	3.4055	0.0017633	517.7812307464801	31.71	0.35794	31.722	31.545	31.902	0.011797					21	8	4	0	0	0	0.024374	1	2144	2144		32.812	0	1	411390	+		33893	21700	23347	23395	38854	38854					0.028980367233771176
KPIKEEKRRKK	11	Unmodified	_KPIKEEKRRKK_					0	0	0		nc|nan|A0A1B0GVB3-2|C7orf78;ENSG00000226690|ENST00000636804|unknown	nc|nan|A0A1B0GVB3-2|C7orf78	nc|nan|A0A1B0GVB3-2|C7orf78	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2822570800781	3	480.643815	1438.90962	0.39436	0.00018955	1.3695	0.00065824	1.7639	0.00084779	480.644462974829	46.173	0.4603	46.173	45.986	46.447	0					25	12	3	0	0	0	0.02477	1	4565	4565		28.577	6.7963	1	197550			33894	10665	23348	23396	38855	38855					0.20771743250611507
KPIKNRSI	8	Unmodified	_KPIKNRSI_					0	0	0		RAI2|p.K504Q|1|0.26|ENSG00000131831|chrX:17800501-17800501|T/G|missense_variant;nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2	RAI2|p.K504Q|1|0.26|ENSG00000131831|chrX:17800501-17800501|T/G|missense_variant	RAI2|p.K504Q|1|0.26|ENSG00000131831|chrX:17800501-17800501|T/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3059997558594	2	478.306001	954.597449	-0.26156	-0.0001251	0.034725	1.6609E-05	-0.22683	-0.0001085	478.30596844199795	23.405	1.2581	23.481	23.195	24.453	0.076239					79	28	4	0	0	0	0.6536	1	863	863		71.296	4.8664	1	2754900			33895	4553	23349	23397	38856	38856					0.11833459296701676
KPIKPVKDLLK	11	Unmodified	_KPIKPVKDLLK_					0	0	0		nc|ENSG00000204410|O43196-4|MSH5;ENSG00000204410|ENST00000375750|MSH5;nc|ENSG00000204410|O43196-2|MSH5;nc|ENSG00000204410|O43196-3|MSH5	nc|ENSG00000204410|O43196-4|MSH5	nc|ENSG00000204410|O43196-4|MSH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2349853515625	3	426.955108	1277.84349	-0.98658	-0.00042123	2.7958	0.0011937	1.8093	0.00077247	426.957152209824	28.057	0.1501	28.057	27.963	28.113	0					5	3	2	0	0	0	0.024896	1	1589	1589		3.4087	0	1	67806			33896	10344	23350	23398	38857	38857					0.2156853435587891
KPINRKVT	8	Unmodified	_KPINRKVT_					0	0	0			REV__ENSG00000075131|ENST00000261881|TIPIN	REV__ENSG00000075131|ENST00000261881|TIPIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.3056945800781	2	478.306001	954.597449	0.22711	0.00010863	-0.70825	-0.00033876	-0.48114	-0.00023013	478.30560724982615	23.502	0.96065	23.502	23.206	24.166	0					63	22	4	0	0	0	0.42327	1	932	932		94.006	11.701	1	3595300	+		33897	20539	23351	23399	38858	38858					0.11833459296701676
KPINRKVT	8	Unmodified	_KPINRKVT_					0	0	0			REV__ENSG00000075131|ENST00000261881|TIPIN	REV__ENSG00000075131|ENST00000261881|TIPIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3059997558594	2	478.306001	954.597449	-0.26156	-0.0001251	0.034725	1.6609E-05	-0.22683	-0.0001085	478.30596844199795	23.405	1.2581	23.481	23.195	24.453	0.076239					79	28	4	0	0	0	0.53523	3	899	874;886;899		82.305	8.3303	1	2754900	+		33898	20539	23351	23399	38859;38860;38861	38861					0.11833459296701676
KPISNHDI	8	Unmodified	_KPISNHDI_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	461.7428283691406	2	462.250892	922.48723	0.66896	0.00030923	4.2577	0.0019681	4.9266	0.0022773	462.2526932096352	50.973	0.491	50.861	50.638	51.129	-0.11163					24	12	3	0	0	0	0.027866	1	5232	5232		30.318	7.2752	1	456320	+		33899	25067	23352	23400	38862	38862					0.022886142376592034
KPITKRAT	8	Unmodified	_KPITKRAT_					0	0	0			REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	REV__nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7558898925781	2	457.792727	913.5709	-0.75908	-0.0003475	3.9681	0.0018166	3.209	0.0014691	457.79416148728785	20.6	0.43023	20.6	20.42	20.85	0					12	8	2	0	0	0	0.027866	1	563	563		45.952	3.4775	1	11405	+		33900	28072	23353	23401	38863	38863					0.11065770405377862
KPIVKSTL	8	Unmodified	_KPIVKSTL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.2923583984375	2	443.292028	884.569503	-0.81142	-0.0003597	1.0275	0.00045549	0.2161	9.5798E-05	443.2922921251535	28.132	1.2018	27.887	27.376	28.578	-0.24524					66	28	4	0	0	0	0.73796	3	1633	1610;1620;1633		64.207	6.8607	1	1203700			33901	896	23354	23402	38864;38865;38866	38866					0.12260136316615444
KPIVKSTL	8	Unmodified	_KPIVKSTL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.29205322265625	2	443.292028	884.569503	-0.83894	-0.0003719	1.005	0.0004455	0.16605	7.3608E-05	443.29228853653325	27.955	1.0219	27.787	27.359	28.381	-0.16816					59	24	3	0	0	0	0.78825	3	1588	1578;1588;1602		60.118	12.461	1	1243300			33902	896	23354	23402	38867;38868;38869	38868					0.12260136316615444
KPIVKSTL	8	Unmodified	_KPIVKSTL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.291748046875	2	443.292028	884.569503	-0.12413	-5.5025E-05	0.21496	9.529E-05	0.090831	4.0265E-05	443.2919671893481	28.171	1.1726	28.019	27.482	28.655	-0.15195					60	28	3	0	0	0	0.44658	2	1600	1589;1600		90.777	19.481	1	1410800			33903	896	23354	23402	38870;38871	38871					0.12260136316615444
KPIVKSTL	8	Unmodified	_KPIVKSTL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.292028	884.569503	-0.67347	-0.00029854	1.0189	0.00045166	0.34541	0.00015312	443.2923021790073	28.101	0.76526	28.101	27.765	28.53	0	0.12228	0.00031272	NaN	90.777	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405850			33904	896	23354	23402							0.12260136316615444
KPIVKSTL	8	Unmodified	_KPIVKSTL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.292028	884.569503	-0.25839	-0.00011454	0.48405	0.00021458	0.22567	0.00010004	443.2921088029431	28.103	0.69044	28.098	27.808	28.499	-0.0042019	0.11931	-0.00016144	NaN	90.777	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505220			33905	896	23354	23402							0.12260136316615444
KPIVKSTL	8	Unmodified	_KPIVKSTL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant;ENST00000495714.1_1_7:36447357-36456706:+|nuORF	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.292028	884.569503	-0.35583	-0.00015774	0.45754	0.00020283	0.10171	4.5089E-05	443.29211893414777	27.902	0.60771	27.983	27.722	28.329	0.081293	0.0040017	-0.00018494	NaN	90.777	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530420			33906	896	23354	23402							0.12260136316615444
KPIYVQENN	9	Unmodified	_KPIYVQENN_					0	0	0			REV__USP29|p.H681Qfs*23|1|0.07|ENSG00000131864|chr19:57130717-57130718|-/ACGGG|frameshift_variant	REV__USP29|p.H681Qfs*23|1|0.07|ENSG00000131864|chr19:57130717-57130718|-/ACGGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.7559814453125	2	552.787838	1103.56112	-0.59766	-0.00033038	2.8001	0.0015479	2.2025	0.0012175	552.7879437187842	22.596	0.69077	22.41	22.047	22.738	-0.18539					27	14	3	0	0	0	0.024313	1	815	815		51.193	1.6567	1	122390	+		33907	23240	23355	23403	38872	38872					0.013485376093512969
KPKAPGVGGAF	11	Unmodified	_KPKAPGVGGAF_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7976684570312	2	514.798009	1027.58147	-0.94961	-0.00048886	1.9219	0.00098941	0.97233	0.00050055	514.7990730647731	35.439	1.2577	35.439	34.629	35.886	0					100	31	5	0	0	0	0.14598	3	2738	2727;2738;2751		104.75	45.28	1	3326900			33908	1128	23356	23404	38873;38874;38875	38874					0.06877753059802671
KPKAPGVGGAF	11	Unmodified	_KPKAPGVGGAF_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7962646484375	2	514.798009	1027.58147	-1.0044	-0.00051706	2.0522	0.0010565	1.0478	0.00053939	514.7991472514753	35.28	1.2336	35.258	34.435	35.669	-0.021763					95	31	4	0	0	0	0.25842	3	2711	2687;2698;2711		93.195	50.331	1	3164400			33909	1128	23356	23404	38876;38877;38878	38878					0.06877753059802671
KPKAPGVGGAF	11	Unmodified	_KPKAPGVGGAF_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7977294921875	2	514.798009	1027.58147	-0.89582	-0.00046117	1.8443	0.00094945	0.94849	0.00048828	514.7990860731275	35.357	1.1067	35.401	34.675	35.782	0.04406					86	28	4	0	0	0	0.14598	3	2670	2659;2670;2683		104.75	44.453	1	3162500			33910	1128	23356	23404	38879;38880;38881	38880					0.06877753059802671
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7899475097656	2	467.789653	933.564752	-0.32424	-0.00015168	0.652	0.000305	0.32776	0.00015332	467.7899019197757	27.146	2.4539	27.146	26.658	29.112	0					135	61	4	0	0	0	0.027092	7	1448	1448;1461;1471;1484;1497;1509;1521		143.89	75.1	1	4079500			33911	1809	23357	23405	38882;38883;38884;38885;38886;38887;38888	38882					0.09531252173849225
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.78985595703125	2	467.789653	933.564752	-0.19065	-8.9182E-05	0.49558	0.00023183	0.30494	0.00014265	467.789796035553	27.063	2.4553	27.05	26.621	29.076	-0.012983					152	61	4	0	0	0	0.016758	8	1498	1426;1439;1448;1461;1473;1484;1498;1509		153.04	78.781	1	3922900			33912	1809	23357	23405	38889;38890;38891;38892;38893;38894;38895;38896	38895					0.09531252173849225
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.7900085449219	2	467.789653	933.564752	-0.26209	-0.0001226	0.52767	0.00024684	0.26557	0.00012423	467.7898436791444	26.933	2.0282	27.015	26.629	28.657	0.081291					130	51	4	0	0	0	0.016758	7	1380	1362;1380;1392;1405;1417;1429;1441		153.04	74.732	1	4197100			33913	1809	23357	23405	38897;38898;38899;38900;38901;38902;38903	38898					0.09531252173849225
KPKATAKAAL	10	Unmodified	_KPKATAKAAL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.82135009765625	2	499.821484	997.628415	1.025	0.00051231	-1.185	-0.00059226	-0.15997	-7.9958E-05	499.82075985654245	19.341	0.52485	19.341	19.119	19.644	0					25	10	4	0	0	0	0.67616	1	397	397		68.846	10.064	1	333230			33914	7521	23358	23406	38904	38904					0.12950612610927692
KPKATAKAAL	10	Unmodified	_KPKATAKAAL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.8214416503906	2	499.821484	997.628415	-0.19812	-9.9024E-05	0.17794	8.8938E-05	-0.020179	-1.0086E-05	499.8214338809389	19.491	0.62602	19.372	19.151	19.777	-0.11872					27	12	4	0	0	0	0.59716	2	405	405;416		77.318	20.931	1	340870			33915	7521	23358	23406	38905;38906	38905					0.12950612610927692
KPKATAKAAL	10	Unmodified	_KPKATAKAAL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.8211669921875	2	499.821484	997.628415	2.6356	0.0013173	-2.6476	-0.0013233	-0.012009	-6.0025E-06	499.82003725480524	19.447	0.63056	19.514	19.291	19.921	0.066195					28	12	4	0	0	0	0.52143	2	371	371;382		85.862	28.871	1	364480			33916	7521	23358	23406	38907;38908	38907					0.12950612610927692
KPKDKERAE	9	Unmodified	_KPKDKERAE_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.788818359375	2	550.806562	1099.59857	-0.48296	-0.00026602	3.5215	0.0019397	3.0386	0.0016737	550.8084089704294	40.985	0.5762	40.85	40.561	41.137	-0.13553					21	14	2	0	0	0	0.024539	1	3632	3632		20.947	8.7403	1	183030	+		33917	25190	23359	23407	38909	38909					0.052756288749378655
KPKDKERAE	9	Unmodified	_KPKDKERAE_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.806562	1099.59857	-0.28412	-0.00015649	3.3669	0.0018545	3.0828	0.001698	550.8083387268734	41.198	0.42983	40.971	40.767	41.197	-0.2278	0.034198	-0.0002341	NaN	20.947	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236240	+		33918	25190	23359	23407							0.052756288749378655
KPKDKERAE	9	Unmodified	_KPKDKERAE_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.806562	1099.59857	-0.76828	-0.00042317	6.1489	0.0033869	5.3806	0.0029637	550.8108386296932	41.219	0.84723	40.989	40.733	41.58	-0.2303	0.05268	0.0028305	NaN	20.947	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180190	+		33919	25190	23359	23407							0.052756288749378655
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.76666259765625	2	508.766571	1015.51859	-0.58322	-0.00029672	0.56099	0.00028541	-0.02223	-1.131E-05	508.7670030526547	22.684	1.752	22.684	21.771	23.523	0					104	38	4	0	0	0	0.016758	3	828	815;828;865		153.04	48.289	1	5505800			33920	5087	23360	23408	38910;38911;38912	38911					0.011451424810957178
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7665100097656	2	508.766571	1015.51859	-0.41181	-0.00020952	0.40463	0.00020586	-0.0071828	-3.6543E-06	508.76690434109787	22.747	1.5882	22.672	22.082	23.67	-0.075296					98	35	4	0	0	0	0.027092	5	811	800;811;823;835;862		143.89	46.775	1	6121000			33921	5087	23360	23408	38913;38914;38915;38916;38917	38914					0.011451424810957178
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7666320800781	2	508.766571	1015.51859	-0.98741	-0.00050236	0.74538	0.00037923	-0.24203	-0.00012313	508.7671287500867	22.556	1.5159	22.63	22.172	23.688	0.073954					80	33	3	0	0	0	0.062622	4	766	742;754;766;778		124.08	30.579	1	5476900			33922	5087	23360	23408	38918;38919;38920;38921	38920					0.011451424810957178
KPKEGREYCQK	11	Unmodified	_KPKEGREYCQK_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.88763427734375	3	455.902966	1364.68707	-0.98737	-0.00045014	0.63209	0.00028817	-0.35528	-0.00016197	455.90401391040143	37.803	0.54188	37.584	37.384	37.926	-0.21849					34	14	4	0	0	0	0.024791	1	3076	3076		33.542	0	1	150560	+		33923	28263;19723	23361	23409	38922	38922					0.019313011231133714
KPKELVKR	8	Unmodified	_KPKELVKR_					0	0	0		ENSG00000277758|ENST00000615923|SYT15B;ENSG00000204176|ENST00000374321|SYT15;nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15	ENSG00000277758|ENST00000615923|SYT15B	ENSG00000277758|ENST00000615923|SYT15B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7691650390625	2	499.329476	996.6444	0.77205	0.00038551	0.12991	6.4869E-05	0.90197	0.00045038	499.32956056330886	19.552	0.2995	19.352	19.206	19.505	-0.2001					8	5	2	0	0	0	0.027866	1	443	443		20.947	2.6225	1	13079			33924	10309	23362	23410	38923	38923					0.14594318847855448
KPKEVVSLPP	10	Unmodified	_KPKEVVSLPP_					0	0	0			REV__STAU2|p.P279S|1|0.09|ENSG00000040341|chr8:73613800-73613800|G/A|missense_variant	REV__STAU2|p.P279S|1|0.09|ENSG00000040341|chr8:73613800-73613800|G/A|missense_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	547.33154296875	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.36	1	101.23	100.73	101.73	-0.13156								0	0	0	0.73832	1	12576	12576		35.618	4.0885	1		+		33925	37585	23363	23411	38924	38924					0.11167462062576305
KPKFVAII	8	Unmodified	_KPKFVAII_					0	0	0			REV__ENSG00000155252|ENST00000370631|PI4K2A	REV__ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.7640380859375	2	458.304939	914.595324	1.5236	0.00069829	2.5612	0.0011738	4.0849	0.0018721	458.3060745534087	23.194	0.63737	23.003	22.572	23.209	-0.19117					22	13	3	0	0	0	0.027866	1	893	893		21.702	7.927	1	364790	+		33926	24998	23364	23412	38925	38925					0.1346103055890353
KPKGGFSS	8	Unmodified	_KPKGGFSS_					0	0	0		nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000491490.5_1_2:227771589-227860235:+|nuORF	nc|ENSG00000144468|Q8TEB9-2|RHBDD1	nc|ENSG00000144468|Q8TEB9-2|RHBDD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.55999755859375	2	404.221603	806.428653	0.35252	0.0001425	-4.2837	-0.0017316	-3.9312	-0.0015891	404.2175286901104	33.459	0.31968	33.228	33.036	33.356	-0.23107					10	7	2	0	0	0	0.027866	1	2405	2405		18.324	4.5491	1	33147			33927	15460	23365	23413	38926	38926					0.01769557663192245
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.3006896972656	2	478.300384	954.586216	0.04144	1.9821E-05	-0.5208	-0.0002491	-0.47936	-0.00022928	478.29998573202954	31.446	1.1082	31.446	30.961	32.07	0					49	26	4	0	0	0	0.34489	1	2097	2097		69.628	18.292	1	1988900			33928	3766	23366	23414	38927	38927					0.10710637202555517
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.30078125	2	478.300384	954.586216	0.039986	1.9126E-05	-0.47891	-0.00022906	-0.43893	-0.00020994	478.29998583257964	31.398	0.81377	31.41	31.17	31.984	0.011799					38	19	3	0	0	0	0.6238	1	2074	2074		51.193	1.7511	1	1888700			33929	3766	23366	23414	38928	38928					0.10710637202555517
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.300384	954.586216	-0.1871	-8.9491E-05	-0.11471	-5.4864E-05	-0.30181	-0.00014436	478.3001412812977	31.212	0.93095	31.281	30.955	31.886	0.068962	-0.098007	0.00021126	NaN	69.628	50	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1790800			33930	3766	23366	23414							0.10710637202555517
KPKIRERRLQR	11	Unmodified	_KPKIRERRLQR_					0	0	0		ENSG00000220008|ENST00000698372|LINGO3	ENSG00000220008|ENST00000698372|LINGO3	ENSG00000220008|ENST00000698372|LINGO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7508544921875	3	493.982942	1478.927	-0.22474	-0.00011102	1.0947	0.00054077	0.86998	0.00042976	493.9837294433138	45.207	0.16397	45.251	45.18	45.344	0.04388					5	4	2	0	0	0	0.024898	1	4330	4330		6.001	2.7897	1	58577			33931	10606	23367	23415	38929	38929					0.20669083576308367
KPKITQSL	8	Unmodified	_KPKITQSL_					0	0	0		nc|ENSG00000066294|Q9UIB8-7|CD84;nc|ENSG00000066294|Q9UIB8-6|CD84;ENST00000368047.3_1_1:160523601-160549236:-|nuORF;nc|ENSG00000066294|Q9UIB8-5|CD84;nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF;ENSG00000066294|ENST00000368054|CD84;nc|ENSG00000066294|Q9UIB8-2|CD84;nc|ENSG00000066294|Q9UIB8|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.7870788574219	2	457.78711	913.559667	0.39052	0.00017877	-0.37442	-0.0001714	0.016101	7.3709E-06	457.78681208654314	21.013	0.58918	20.818	20.533	21.123	-0.19577					24	11	3	0	0	0	0.73796	1	613	613		64.207	7.4862	1	248850			33932	1336	23368	23416	38930	38930					0.09942948311231703
KPKITQSL	8	Unmodified	_KPKITQSL_					0	0	0		nc|ENSG00000066294|Q9UIB8-7|CD84;nc|ENSG00000066294|Q9UIB8-6|CD84;ENST00000368047.3_1_1:160523601-160549236:-|nuORF;nc|ENSG00000066294|Q9UIB8-5|CD84;nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF;ENSG00000066294|ENST00000368054|CD84;nc|ENSG00000066294|Q9UIB8-2|CD84;nc|ENSG00000066294|Q9UIB8|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.78711	913.559667	1.1353	0.00051973	-0.91825	-0.00042036	0.21705	9.9364E-05	457.7864315729765	20.666	0.29512	20.734	20.563	20.858	0.068901	-0.052997	-0.00089991	NaN	64.207	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7249.2			33933	1336	23368	23416							0.09942948311231703
KPKITQSL	8	Unmodified	_KPKITQSL_					0	0	0		nc|ENSG00000066294|Q9UIB8-7|CD84;nc|ENSG00000066294|Q9UIB8-6|CD84;ENST00000368047.3_1_1:160523601-160549236:-|nuORF;nc|ENSG00000066294|Q9UIB8-5|CD84;nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF;ENSG00000066294|ENST00000368054|CD84;nc|ENSG00000066294|Q9UIB8-2|CD84;nc|ENSG00000066294|Q9UIB8|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.78711	913.559667	0.27138	0.00012423	-0.36683	-0.00016793	-0.095452	-4.3697E-05	457.78680153269784	20.928	0.6301	20.751	20.435	21.065	-0.17721	-0.036913	-0.00039504	NaN	64.207	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268460			33934	1336	23368	23416							0.09942948311231703
KPKITQSL	8	Unmodified	_KPKITQSL_					0	0	0		nc|ENSG00000066294|Q9UIB8-7|CD84;nc|ENSG00000066294|Q9UIB8-6|CD84;ENST00000368047.3_1_1:160523601-160549236:-|nuORF;nc|ENSG00000066294|Q9UIB8-5|CD84;nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF;ENSG00000066294|ENST00000368054|CD84;nc|ENSG00000066294|Q9UIB8-2|CD84;nc|ENSG00000066294|Q9UIB8|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	nc|ENSG00000066294|Q9UIB8-7|CD84	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.78711	913.559667	-0.90793	-0.00041564	0.99577	0.00045585	0.087841	4.0212E-05	457.78743148673084	21.06	0.64185	20.847	20.624	21.266	-0.2128	0.059827	0.00085253	NaN	64.207	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269810			33935	1336	23368	23416							0.09942948311231703
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.80535888671875	2	509.805834	1017.59712	-0.64851	-0.00033061	0.20547	0.00010475	-0.44304	-0.00022587	509.8057750446398	23.585	0.88841	23.585	23.321	24.209	0					52	20	4	0	0	0	0.6365	1	945	945		72.879	3.2516	1	920900			33936	14826	23369	23417	38931	38931					0.08902039576855714
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.80517578125	2	509.805834	1017.59712	-0.77219	-0.00039367	0.24958	0.00012724	-0.52261	-0.00026643	509.80579087911303	23.595	0.98333	23.534	23.267	24.251	-0.060862					58	22	4	0	0	0	0.52765	2	934	934;947		85.161	20.643	1	766900			33937	14826	23369	23417	38932;38933	38932					0.08902039576855714
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.80517578125	2	509.805834	1017.59712	-0.4473	-0.00022804	0.1102	5.6183E-05	-0.3371	-0.00017185	509.8057134020076	23.503	1.0449	23.58	23.272	24.317	0.076241					59	23	4	0	0	0	0.66532	1	890	890		69.628	16.691	1	763050			33938	14826	23369	23417	38934	38934					0.08902039576855714
KPKKSIPPP	9	Unmodified	_KPKKSIPPP_					0	0	0			REV__ENSG00000135540|ENST00000343505|NHSL1	REV__ENSG00000135540|ENST00000343505|NHSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.3072204589844	2	496.318577	990.622602	-0.60486	-0.0003002	0.43848	0.00021763	-0.16638	-8.2576E-05	496.31876578230845	22.016	0.57975	21.814	21.566	22.146	-0.20199					33	11	4	0	0	0	0.024374	1	724	724		49.442	13.823	1	242440	+		33939	23556	23370	23418	38935	38935					0.12691514099276446
KPKKTSTPKK	10	Unmodified	_KPKKTSTPKK_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.8640747070312	2	571.866423	1141.71829	0.41833	0.00023923	-0.41924	-0.00023975	-0.0009025	-5.1611E-07	571.866104450524	17.621	0.22699	17.478	17.325	17.552	-0.14278					7	4	2	0	0	0	1.1329	1	178	178		27.882	2.3082	1	44952	+		33940	22292	23371	23419	38936	38936					0.15310242219493375
KPKLGFPK	8	Unmodified	_KPKLGFPK_					0	0	0		ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.75341796875	2	457.794738	913.574923	-0.31002	-0.00014193	3.7989	0.0017391	3.4889	0.0015972	457.796351484019	20.744	0.37496	20.64	20.473	20.848	-0.10477					10	7	2	0	0	0	0.027866	1	554	554		25.45	0	1	18015			33941	18260;4331	23372	23420	38937	38937					0.11467859899084942
KPKLKKMW	8	Unmodified	_KPKLKKMW_					0	0	0			REV__ENST00000416645.6_1_5:36608538-36612883:+|nuORF	REV__ENST00000416645.6_1_5:36608538-36612883:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2506103515625	2	529.830798	1057.64704	0.65771	0.00034848	0.13536	7.1719E-05	0.79308	0.0004202	529.8313243511259	51.419	0.26543	51.308	51.209	51.475	-0.11163					11	6	2	0	0	0	0.027866	1	5275	5275		24.203	21.044	1	131460	+		33942	32084	23373	23421	38938	38938					0.1205245098112755
KPKLRLRNTS	10	Unmodified	_KPKLRLRNTS_					0	0	0		ENST00000445020.1_1_6:73696704-73697142:+|nuORF	ENST00000445020.1_1_6:73696704-73697142:+|nuORF	ENST00000445020.1_1_6:73696704-73697142:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9229431152344	3	404.922689	1211.74624	0.50474	0.00020438	-0.80421	-0.00032564	-0.29947	-0.00012126	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.1228	1	1347	1347		22.562	2.2466	1	35253000			33943	14432	23374	23422	38939	38939					0.14883565199579607
KPKLVQNST	9	Unmodified	_KPKLVQNST_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.788330078125	2	507.800749	1013.58694	-0.39083	-0.00019847	4.4024	0.0022355	4.0115	0.0020371	507.8028076726257	20.012	0.23532	19.907	19.745	19.981	-0.10477					6	4	2	0	0	0	0.023239	1	475	475		84.916	8.0689	1	10422			33944	8771	23375	23423	38940	38940					0.08069431851606623
KPKPKPNQNL	10	Unmodified	_KPKPKPNQNL_					0	0	0		ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3467407226562	2	582.348397	1162.68224	4.0239	0.0023433	-4.4824	-0.0026103	-0.45848	-0.00026699	582.3458053873856	18.548	0.6388	18.611	18.402	19.041	0.063307					28	12	3	0	0	0	1.0271	1	284	284		42.396	4.5846	1	75730			33945	8229;18517	23376	23424	38941	38941					0.10740785042662537
KPKPNNIFG	9	Unmodified	_KPKPNNIFG_					0	0	0			REV__ENSG00000136827|ENST00000351698|TOR1A	REV__ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.788330078125	2	507.790184	1013.56581	-0.41455	-0.0002105	-3.8006	-0.0019299	-4.2151	-0.0021404	507.7882805000786	20.046	1.148	19.941	19.557	20.705	-0.10477					61	23	4	0	0	0	0.15889	1	499	499		97.473	25.595	1	2020100	+		33946	23686	23377	23425	38942	38942					0.05957466542747625
KPKQNKPPE	9	Unmodified	_KPKQNKPPE_					0	0	0			REV__nc|ENSG00000166197|Q14978-3|NOLC1	REV__nc|ENSG00000166197|Q14978-3|NOLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2745361328125	2	533.306198	1064.59784	0.4333	0.00023108	3.4659	0.0018484	3.8992	0.0020795	533.3079866591358	79.498	2.1566	79.251	77.751	79.907	-0.2465					19	14	2	0	0	0	0.024381	1	9365	9365		29.15	7.4472	1	181880	+		33947	36883	23378	23426	38943	38943					0.06812834225888764
KPKRKFLP	8	Unmodified	_KPKRKFLP_					0	0	0			REV__ENST00000461878.5_1_7:116502665-116528309:+|nuORF	REV__ENST00000461878.5_1_7:116502665-116528309:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.81085205078125	2	507.334562	1012.65457	-0.082697	-4.1955E-05	-4.0427	-0.002051	-4.1253	-0.0020929	507.3323949999448	18.193	0.3962	17.99	17.816	18.212	-0.20371					12	7	2	0	0	0	0.027866	1	249	249		7.6903	0	1	61654	+		33948	32888	23379	23427	38944	38944					0.14874926573088487
KPKRKSKYE	9	Unmodified	_KPKRKSKYE_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3486938476562	2	582.348397	1162.68224	4.0239	0.0023433	-4.4824	-0.0026103	-0.45848	-0.00026699	582.3458053873856	18.548	0.6388	18.611	18.402	19.041	0.063307					28	12	3	0	0	0	0.93097	1	272	272		30.318	1.1682	1	75730	+		33949	28521	23380	23428	38945	38945					0.10740785042685275
KPKRRRAAD	9	Unmodified	_KPKRRRAAD_					0	0	0		nc|ENSG00000169246|Q92617-2|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3;nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000254206|ENST00000698511|NPIPB11;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000169246|ENST00000542817|NPIPB3	nc|ENSG00000169246|Q92617-2|NPIPB3	nc|ENSG00000169246|Q92617-2|NPIPB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2963256835938	2	549.336156	1096.65776	-0.89154	-0.00048976	0.51331	0.00028198	-0.37823	-0.00020778	549.3366388513831	21.469	0.48202	21.378	21.109	21.591	-0.090092					19	9	3	0	0	0	0.024541	1	649	649		31.955	3.7006	1	70931			33950	7912	23381	23429	38946	38946					0.1132956967978771
KPKSPTKQV	9	Unmodified	_KPKSPTKQV_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8104553222656	2	506.811116	1011.60768	0.25101	0.00012721	-0.55292	-0.00028023	-0.30192	-0.00015301	506.81072754146834	17.868	0.7751	17.726	17.368	18.143	-0.14278					25	15	2	0	0	0	0.99726	1	221	221		20.947	0.95016	1	290360	+		33951	27855	23382	23430	38947	38947					0.10234022231293238
KPKSPTKQV	9	Unmodified	_KPKSPTKQV_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.8108215332031	2	506.811116	1011.60768	1.0398	0.00052699	-1.1683	-0.00059211	-0.12849	-6.5121E-05	506.8104212621721	17.984	0.59398	17.827	17.505	18.099	-0.15627					26	9	4	0	0	0	0.89441	2	245	245;256		32.812	6.1195	1	565420	+		33952	27855	23382	23430	38948;38949	38948					0.10234022231293238
KPKSQQTSF	9	Unmodified	_KPKSQQTSF_					0	0	0		ENSG00000086102|ENST00000379540|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;nc|ENSG00000086102|Q12986-3|NFX1	ENSG00000086102|ENST00000379540|NFX1	ENSG00000086102|ENST00000379540|NFX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7830810546875	2	525.782556	1049.55056	-0.86325	-0.00045388	0.52073	0.00027379	-0.34252	-0.00018009	525.7827242771776	19.905	0.6789	19.905	19.644	20.323	0					43	13	4	0	0	0	0.12914	2	465	465;473		104.06	19.39	1	578870			33953	1810	23383	23431	38950;38951	38950					0.027765549549030766
KPKSQQTSF	9	Unmodified	_KPKSQQTSF_					0	0	0		ENSG00000086102|ENST00000379540|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;nc|ENSG00000086102|Q12986-3|NFX1	ENSG00000086102|ENST00000379540|NFX1	ENSG00000086102|ENST00000379540|NFX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.78271484375	2	525.782556	1049.55056	-0.57702	-0.00030339	0.27601	0.00014512	-0.30101	-0.00015827	525.7825624890784	20.11	0.67473	20.005	19.7	20.375	-0.10477					27	13	3	0	0	0	0.28753	1	489	489		77.318	8.5308	1	283910			33954	1810	23383	23431	38952	38952					0.027765549549030766
KPKSRTKGL	9	Unmodified	_KPKSRTKGL_					0	0	0			REV__ARHGAP5|p.D247G|1|0.37|ENSG00000100852|chr14:32091409-32091409|A/G|missense_variant	REV__ARHGAP5|p.D247G|1|0.37|ENSG00000100852|chr14:32091409-32091409|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.788330078125	2	507.824558	1013.63456	-0.40151	-0.0002039	-0.48842	-0.00024803	-0.88993	-0.00045193	507.8239280432091	20.061	0.23532	19.956	19.745	19.981	-0.10477					6	4	2	0	0	0	0.023181	1	475	475		71.296	0	1	17560	+		33955	19165	23384	23432	38953	38953					0.12829130842476388
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__ENSG00000169607|ENST00000302450|CKAP2L	REV__ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.91802978515625	3	406.583674	1216.72919	1.6044	0.00065232	-0.67751	-0.00027546	0.92689	0.00037686	406.58343148678966	114.65	0.091301	114.66	114.59	114.68	0.0087204					6	3	2	0	0	0	1.118	1	14122	14122		20.03	3.3131	1	192090	+		33956	26384	23385	23433	38954	38954					0.1294964459377752
KPKSSKIHF	9	Unmodified	_KPKSSKIHF_					0	0	0		WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.34228515625	2	536.319109	1070.62366	-1.6138	-0.00086549	1.0235	0.00054893	-0.59025	-0.00031656	536.3190147011501	26.934	0.25373	27.015	26.883	27.136	0.081293					12	6	3	0	0	0	0.024539	1	1358	1358		27.882	4.8398	1	249990			33957	38154	23386	23434	38955	38955					0.09117728468186215
KPKSYSSSL	9	Unmodified	_KPKSYSSSL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7711181640625	2	498.771657	995.528761	-0.078891	-3.9349E-05	-0.045334	-2.2611E-05	-0.12422	-6.196E-05	498.7713436363612	23.688	1.1612	23.764	23.476	24.637	0.076241					51	25	3	0	0	0	0.17845	1	913	913		93.143	23.516	1	560360			33958	2903	23387	23435	38956	38956					0.030817502063428037
KPKSYSSSL	9	Unmodified	_KPKSYSSSL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.771657	995.528761	-0.23556	-0.00011749	-0.19941	-9.9461E-05	-0.43497	-0.00021695	498.7713550512922	23.84	0.77405	23.84	23.523	24.297	0	0.042027	-0.00011534	NaN	93.143	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576490			33959	2903	23387	23435							0.030817502063428037
KPKSYSSSL	9	Unmodified	_KPKSYSSSL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.771657	995.528761	-0.82618	-0.00041208	1.1472	0.00057217	0.32098	0.0001601	498.7716459280511	23.841	1.0655	23.79	23.239	24.305	-0.05085	-0.0082434	0.0012279	NaN	93.143	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557010			33960	2903	23387	23435							0.030817502063428037
KPKTPSLTVF	10	Unmodified	_KPKTPSLTVF_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.3341064453125	2	559.334424	1116.6543	-0.15551	-8.6982E-05	-0.81903	-0.00045811	-0.97454	-0.00054509	559.3338620287233	48.884	1.0258	48.884	48.482	49.508	0					77	28	4	0	0	0	0.17599	3	5018	5007;5018;5032		124.08	39.165	1	4840800			33961	9030	23388	23436	38957;38958;38959	38958					0.10063462062566941
KPKTPSLTVF	10	Unmodified	_KPKTPSLTVF_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.3345336914062	2	559.334424	1116.6543	-0.58356	-0.0003264	-0.27235	-0.00015234	-0.85591	-0.00047874	559.3341827563602	49.073	1.1275	48.92	48.505	49.632	-0.15276					83	30	4	0	0	0	0.29487	3	5038	5015;5026;5038		109.48	45.271	1	4386200			33962	9030	23388	23436	38960;38961;38962	38962					0.10063462062566941
KPKTPSLTVF	10	Unmodified	_KPKTPSLTVF_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.33447265625	2	559.334424	1116.6543	-0.77326	-0.00043251	-0.051543	-2.883E-05	-0.8248	-0.00046134	559.3342758242352	48.755	0.96847	48.822	48.452	49.421	0.066799					80	26	4	0	0	0	0.11225	3	4925	4925;4937;4952		132.76	50.517	1	4541400			33963	9030	23388	23436	38963;38964;38965	38963					0.10063462062566941
KPKTRAAP	8	Unmodified	_KPKTRAAP_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2874450683594	2	434.771794	867.529036	-0.68303	-0.00029696	2.0789	0.00090384	1.3959	0.00060688	434.7720459606379	26.081	0.65479	25.918	25.544	26.199	-0.16331					28	18	2	0	0	0	0.027866	1	1290	1290		40.573	7.057	1	331770	+		33964	19966	23389	23437	38966	38966					0.08997214716828239
KPKTTNIEL	9	Unmodified	_KPKTTNIEL_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3088989257812	2	522.308406	1042.60226	-0.67296	-0.00035149	-1.9133	-0.00099935	-2.5863	-0.0013508	522.3071687495956	32.324	0.86607	32.336	32.144	33.01	0.011799					55	22	4	0	0	0	0.22902	1	2218	2218		85.161	0.2453	1	2360400			33965	3616	23390	23438	38967	38967					0.0826629864880033
KPKTTNIEL	9	Unmodified	_KPKTTNIEL_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.308349609375	2	522.308406	1042.60226	-0.4702	-0.00024559	-1.9137	-0.00099956	-2.3839	-0.0012451	522.3069846575812	32.151	1.3557	32.214	31.72	33.076	0.062889					67	34	4	0	0	0	0.10174	2	2166	2155;2166		110.12	10.875	1	2355600			33966	3616	23390	23438	38968;38969	38969					0.0826629864880033
KPKVASMEEMA	11	Unmodified	_KPKVASMEEMA_					0	0	0		nc|ENSG00000147099|Q9BY41-5|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF	nc|ENSG00000147099|Q9BY41-5|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.7348937988281	3	407.538636	1219.59408	-0.0092169	-3.7562E-06	0.24985	0.00010182	0.24063	9.8068E-05	407.87242201294265	22.303	0.33476	22.101	21.951	22.285	-0.20199					10	6	2	0	0	0	0.024747	1	753	753		21.78	0	1	14047			33967	5930	23391	23439	38970	38970					-0.006933396544809511
KPKVRFTV	8	Unmodified	_KPKVRFTV_					0	0	0		ENSG00000175018|ENST00000368821|TEX36	ENSG00000175018|ENST00000368821|TEX36	ENSG00000175018|ENST00000368821|TEX36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.24603271484375	2	487.810919	973.607286	-0.12641	-6.1663E-05	3.0078	0.0014672	2.8814	0.0014056	487.8121637262782	23.903	0.21684	23.723	23.607	23.824	-0.17989					6	4	2	0	0	0	0.027866	1	973	973		16.473	3.514	1	15921			33968	8522	23392	23440	38971	38971					0.11942647302078058
KPKWKSDYPM	10	Unmodified	_KPKWKSDYPM_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.26666259765625	3	427.221636	1278.64308	0.61471	0.00026262	-3.2188	-0.0013751	-2.6041	-0.0011125	427.22016211572355	42.911	0.69137	42.94	42.683	43.374	0.028851					43	18	3	0	0	0	0.03519	1	3895	3895		10.587	0.94066	1	941810			33969	7799	23393	23441	38972	38972					0.014903166967769721
KPKYKKAL	8	Unmodified	_KPKYKKAL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.3209228515625	2	488.32112	974.627687	4.0773	0.001991	-4.0232	-0.0019646	0.054101	2.6419E-05	488.31898825384366	17.958	0.44589	17.715	17.478	17.924	-0.24256					13	8	2	0	0	0	1.0338	1	222	222		31.955	12.595	1	58573			33970	4563	23394	23442	38973	38973					0.13935817961885277
KPKYKKAL	8	Unmodified	_KPKYKKAL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.32112	974.627687	-0.02253	-1.1002E-05	0.032512	1.5876E-05	0.0099821	4.8745E-06	488.320988609417	17.964	0.39791	17.758	17.564	17.962	-0.20669	0.021198	0.00099301	NaN	31.955	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57599			33971	4563	23394	23442							0.13935817961885277
KPLALVEEIR	10	Unmodified	_KPLALVEEIR_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.3566284179688	2	584.358431	1166.70231	-1.5035	-0.00087856	-2.2448	-0.0013117	-3.7482	-0.0021903	584.3569906340243	90.918	2.9096	90.763	89.904	92.814	-0.1552					184	69	3	0	0	0	1.1333	1	11249	11249		28.081	4.5588	1	681520			33972	4934	23395	23443	38974	38974					0.12562535982578993
KPLAPYLA	8	Unmodified	_KPLAPYLA_					0	0	0			REV__nc|ENSG00000178795|Q6W3E5|GDPD4	REV__nc|ENSG00000178795|Q6W3E5|GDPD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.8841857910156	2	436.765646	871.516739	0.098201	4.2891E-05	-3.4231	-0.0014951	-3.3249	-0.0014522	436.76410359076766	18.243	0.34694	18.039	17.866	18.212	-0.20371					10	6	2	0	0	0	0.027866	1	277	277		14.664	6.4328	1	20357	+		33973	36980	23396	23444	38975	38975					0.07584178253796381
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2872009277344	2	493.287474	984.560395	-1.0574	-0.0005216	0.52575	0.00025934	-0.53164	-0.00026225	493.2875840557674	29.871	1.3522	29.871	29.032	30.384	0					75	33	3	0	0	0	0.012922	3	1866	1857;1866;1878		199.7	62.77	1	2534500			33974	3541	23397	23445	38976;38977;38978	38977					0.06749742960278127
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2872009277344	2	493.287474	984.560395	-0.56479	-0.0002786	-0.056373	-2.7808E-05	-0.62116	-0.00030641	493.28733373900593	29.822	0.97937	29.831	29.394	30.373	0.0086708					55	23	3	0	0	0	0.013442	4	1856	1835;1844;1856;1869		185.72	62.51	1	2547400			33975	3541	23397	23445	38979;38980;38981;38982	38981					0.06749742960278127
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2872619628906	2	493.287474	984.560395	-0.87097	-0.00042964	0.33279	0.00016416	-0.53818	-0.00026548	493.2875099628279	29.549	0.93203	29.627	29.242	30.174	0.078344					61	22	5	0	0	0	0.013442	3	1777	1765;1777;1793		195.57	75.267	1	2670600			33976	3541	23397	23445	38983;38984;38985	38984					0.06749742960278127
KPLGRYTF	8	Unmodified	_KPLGRYTF_					0	0	0			REV__nc|ENSG00000164220|O00254-2|F2RL2	REV__nc|ENSG00000164220|O00254-2|F2RL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2953796386719	2	491.279452	980.544351	-0.53427	-0.00026247	1.7251	0.0008475	1.1908	0.00058503	491.28019668369745	56.788	0.28558	56.623	56.459	56.745	-0.16431					11	7	2	0	0	0	0.027866	1	6338	6338		38.806	8.3025	1	341940	+		33977	25719	23398	23446	38986	38986					0.05330081514034646
KPLGYGPAL	9	Unmodified	_KPLGYGPAL_					0	0	0			REV__TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	REV__TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2379150390625	2	458.268553	914.522553	-0.94274	-0.00043203	-3.7376	-0.0017128	-4.6803	-0.0021449	458.2666888416415	35.622	0.57619	35.601	35.308	35.884	-0.021767					22	14	2	0	0	0	0.024293	1	2723	2723		42.474	24.15	1	479750	+		33978	37679	23399	23447	38987	38987					0.06187276765456318
KPLGYGPAL	9	Unmodified	_KPLGYGPAL_					0	0	0			REV__TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	REV__TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.268553	914.522553	-0.5863	-0.00026868	-3.672	-0.0016828	-4.2583	-0.0019515	458.26672529571624	35.895	1.0963	35.69	35.346	36.443	-0.20518	0.012455	0.0003574	NaN	42.474	47	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3493700	+		33979	37679	23399	23447							0.06187276765456318
KPLGYGPAL	9	Unmodified	_KPLGYGPAL_					0	0	0			REV__TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	REV__TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.268553	914.522553	0.23405	0.00010726	-4.3775	-0.0020061	-4.1435	-0.0018988	458.26642452150776	35.809	1.0852	35.61	35.248	36.334	-0.19829	-0.067006	-0.0002892	NaN	42.474	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3430800	+		33980	37679	23399	23447							0.06187276765456318
KPLHYMTIMSR	11	Unmodified	_KPLHYMTIMSR_					0	0	0		OR4D9|p.N172Mfs*27|1|0.27|ENSG00000172742|chr11:59515423-59515423|C/-|frameshift_variant;ENSG00000172742|ENST00000641962|OR4D9	OR4D9|p.N172Mfs*27|1|0.27|ENSG00000172742|chr11:59515423-59515423|C/-|frameshift_variant	OR4D9|p.N172Mfs*27|1|0.27|ENSG00000172742|chr11:59515423-59515423|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.92156982421875	3	459.577425	1375.71045	2.0202	0.00092844	-3.1595	-0.0014521	-1.1393	-0.00052361	459.57590300702407	24.73	0.61291	24.549	24.285	24.898	-0.18089					26	13	3	0	0	0	0.024759	1	1081	1081		23.378	1.5975	1	98846			33981	8300	23400	23448	38988	38988					0.03762023636068079
KPLIRILIL	9	Unmodified	_KPLIRILIL_					0	0	0		ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.81591796875	2	539.88917	1077.76379	-0.69268	-0.00037397	-2.2501	-0.0012148	-2.9428	-0.0015888	540.388481473119	45.439	0.20337	45.339	45.221	45.424	-0.099445					8	5	2	0	0	0	0.024541	1	4294	4294		11.511	3.2797	1	154340			33982	11738	23401	23449	38989	38989					0.2280151247257436
KPLIRILIL	9	Unmodified	_KPLIRILIL_					0	0	0		ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	ENST00000283632.4_1_2:86968118-86979052:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.81591796875	2	539.88917	1077.76379	-0.41059	-0.00022168	0.96844	0.00052285	0.55784	0.00030117	539.8903719625288	45.678	0.17107	45.425	45.359	45.53	-0.25252					5	4	2	0	0	0	0.024541	1	4347	4347		17.365	4.4058	1	37922			33983	11738	23401	23449	38990	38990					0.2280151247257436
KPLKPRVTI	9	Unmodified	_KPLKPRVTI_					0	0	0		ENST00000521873.1_1_8:79578383-79590923:+|nuORF	ENST00000521873.1_1_8:79578383-79590923:+|nuORF	ENST00000521873.1_1_8:79578383-79590923:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2984008789062	2	526.352951	1050.69135	0.017413	9.1652E-06	-0.73433	-0.00038652	-0.71692	-0.00037735	526.3522270981838	54.758	0.38961	54.856	54.66	55.05	0.098015					17	10	2	0	0	0	0.024541	1	5964	5964		11.511	0	1	149990			33984	16015	23402	23450	38991	38991					0.168031783989818
KPLKTDRE	8	Unmodified	_KPLKTDRE_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7850646972656	2	493.785099	985.555644	-0.7538	-0.00037221	-1.54	-0.00076044	-2.2938	-0.0011327	493.7852536932994	25.542	1.696	25.507	24.904	26.6	-0.034397					114	40	5	0	0	0	0.42912	1	1221	1221		93.195	15.878	1	4753200	+		33985	25795	23403	23451	38992	38992					0.062288588175078985
KPLLWVLL	8	Unmodified	_KPLLWVLL_					0	0	0		ENST00000465984.5_1_2:219247091-219251606:+|nuORF	ENST00000465984.5_1_2:219247091-219251606:+|nuORF	ENST00000465984.5_1_2:219247091-219251606:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.3135986328125	2	491.328414	980.642274	-0.34654	-0.00017026	-0.84221	-0.0004138	-1.1888	-0.00058407	491.32735932643	28.917	0.21545	28.748	28.554	28.769	-0.16897					6	4	2	0	0	0	0.027866	1	1725	1725		65.897	0	1	64414			33986	14801	23404	23452	38993	38993					0.1511789011003657
KPLLYPAR	8	Unmodified	_KPLLYPAR_					0	0	0			REV__ENST00000560419.1_1_14:75893609-75893885:-|nuORF	REV__ENST00000560419.1_1_14:75893609-75893885:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.32293701171875	2	479.297645	956.580737	-0.22061	-0.00010574	-3.7912	-0.0018171	-4.0118	-0.0019229	479.2956707913062	24.231	0.89883	24.056	23.612	24.511	-0.17484					50	20	4	0	0	0	0.027866	1	1075	1075		40.573	0	1	1948500	+		33987	35146	23405	23453	38994	38994					0.10070958410744879
KPLMPFASI	9	Unmodified	_KPLMPFASI_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-2|NCOA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2477111816406	2	502.285889	1002.55722	0.16971	8.5241E-05	2.3839	0.0011974	2.5536	0.0012826	502.2871898587502	61.395	0.61565	61.395	61.216	61.832	0					28	15	2	0	0	0	0.024292	1	7084	7084		49.442	0	1	514790	+		33988	22736	23406	23454	38995	38995					0.05604776581913029
KPLNPPIKK	9	Unmodified	_KPLNPPIKK_					0	0	0		nc|nan|Q8N5S3-2|C2orf73;ENSG00000177994|ENST00000398634|C2orf73	nc|nan|Q8N5S3-2|C2orf73	nc|nan|Q8N5S3-2|C2orf73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2929077148438	2	517.839677	1033.6648	-0.67579	-0.00034995	0.030898	1.6E-05	-0.64489	-0.00033395	517.8395728383466	31.995	0.39688	31.995	31.789	32.186	0					13	9	2	0	0	0	0.024477	1	2189	2189		35.618	19.145	1	43478			33989	8783	23407	23455	38996	38996					0.1493148950764862
KPLNPPIKK	9	Unmodified	_KPLNPPIKK_					0	0	0		nc|nan|Q8N5S3-2|C2orf73;ENSG00000177994|ENST00000398634|C2orf73	nc|nan|Q8N5S3-2|C2orf73	nc|nan|Q8N5S3-2|C2orf73	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.839677	1033.6648	-0.12354	-6.3974E-05	0.030585	1.5838E-05	-0.092956	-4.8136E-05	517.8394660733521	31.918	0.54299	31.681	31.411	31.954	-0.23667	-0.13327	2.8067E-05	NaN	35.618	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296890			33990	8783	23407	23455							0.1493148950764862
KPLNPPIKK	9	Unmodified	_KPLNPPIKK_					0	0	0		nc|nan|Q8N5S3-2|C2orf73;ENSG00000177994|ENST00000398634|C2orf73	nc|nan|Q8N5S3-2|C2orf73	nc|nan|Q8N5S3-2|C2orf73	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	517.839677	1033.6648	0.20229	0.00010475	-0.3964	-0.00020527	-0.19411	-0.00010052	517.839309840106	31.944	0.67214	31.759	31.321	31.993	-0.18554	-0.055288	-0.00041415	NaN	35.618	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333020			33991	8783	23407	23455							0.1493148950764862
KPLNPPIKK	9	Unmodified	_KPLNPPIKK_					0	0	0		nc|nan|Q8N5S3-2|C2orf73;ENSG00000177994|ENST00000398634|C2orf73	nc|nan|Q8N5S3-2|C2orf73	nc|nan|Q8N5S3-2|C2orf73	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.839677	1033.6648	-0.3068	-0.00015887	0.39813	0.00020617	0.091327	4.7292E-05	517.8396661973112	31.979	0.53987	31.821	31.451	31.991	-0.15772	0.0073518	0.00040872	NaN	35.618	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252550			33992	8783	23407	23455							0.1493148950764862
KPLNPSYSD	9	Unmodified	_KPLNPSYSD_					0	0	0			REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7903137207031	2	510.753464	1019.49238	-0.50372	-0.00025728	1.7374	0.00088737	1.2336	0.00063009	510.75375799912615	42.912	1.2395	42.675	42.112	43.351	-0.23736					60	32	3	0	0	0	0.024495	1	3949	3949		34.173	13.691	1	339470	+		33993	23427	23408	23456	38997	38997					-0.01659126690390167
KPLPHRLF	8	Unmodified	_KPLPHRLF_					0	0	0			REV__ENSG00000198576|ENST00000356613|ARC	REV__ENSG00000198576|ENST00000356613|ARC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.29779052734375	2	504.311087	1006.60762	-0.36257	-0.00018285	1.2267	0.00061863	0.86411	0.00043578	504.31160881022913	36.767	0.23737	36.55	36.491	36.729	-0.21661					7	5	2	0	0	0	0.027866	1	2920	2920		20.482	0	1	101930	+		33994	28434	23409	23457	38998	38998					0.10458067021932038
KPLPHRLF	8	Unmodified	_KPLPHRLF_					0	0	0			REV__ENSG00000198576|ENST00000356613|ARC	REV__ENSG00000198576|ENST00000356613|ARC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2981262207031	2	504.311087	1006.60762	1.1828	0.00059647	4.1305	0.0020831	5.3132	0.0026795	504.31357205567093	36.7	0.2799	36.491	36.405	36.685	-0.2092					10	6	2	0	0	0	0.027866	1	2868	2868		20.482	0	1	27557	+		33995	28434	23409	23457	38999	38999					0.10458067021932038
KPLPQALSK	9	Unmodified	_KPLPQALSK_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.29754638671875	2	491.30821	980.601866	0.034202	1.6804E-05	-1.8757	-0.00092153	-1.8415	-0.00090473	491.3074403655899	47.716	0.22424	47.44	47.268	47.492	-0.27598					8	5	2	0	0	0	0.024257	1	4644	4644		27.047	0	1	90164			33996	8200	23410	23458	39000	39000					0.11078923719605882
KPLQHQTTCTK	11	Unmodified	_KPLQHQTTCTK_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.87042236328125	3	428.895812	1283.66561	0.078202	3.3541E-05	-2.8205	-0.0012097	-2.7423	-0.0011761	428.89435618702316	36.845	0.28183	36.629	36.368	36.65	-0.21661					9	6	2	0	0	0	0.024742	1	2895	2895		32.034	14.201	1	37488	+		33997	23785	23411	23459	39001	39001					0.03511916094385015
KPLQWLLP	8	Unmodified	_KPLQWLLP_					0	0	0		MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77191162109375	2	497.807845	993.601138	1.8203	0.00090614	2.6322	0.0013104	4.4525	0.0022165	497.8094927852557	24.355	0.73893	24.174	24.028	24.767	-0.18089					25	16	2	0	0	0	0.027866	1	1047	1047		13.775	4.953	1	86200			33998	17944	23412	23460	39002	39002					0.10408129070549421
KPLRLPRPQ	9	Unmodified	_KPLRLPRPQ_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8109741210938	2	552.85365	1103.69275	-1.1347	-0.0006273	-3.9584	-0.0021884	-5.093	-0.0028157	552.8514231234723	51.335	0.17123	51.422	51.339	51.511	0.087006					7	4	2	0	0	0	0.024487	1	5369	5369		24.203	1.1603	1	62234	+		33999	28831	23413	23461	39003	39003					0.14504812487734853
KPLRPGPGA	9	Unmodified	_KPLRPGPGA_					0	0	0			REV__ENSG00000162777|ENST00000357640|DENND2D	REV__ENSG00000162777|ENST00000357640|DENND2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2701721191406	2	446.771794	891.529036	-0.37213	-0.00016626	0.86064	0.00038451	0.48851	0.00021825	446.77186167269934	22.113	1.1677	22.113	21.819	22.987	0					47	24	4	0	0	0	0.024354	1	787	787		10.866	0	1	544190	+		34000	25492	23414	23462	39004	39004					0.07893214716841612
KPLTKVAW	8	Unmodified	_KPLTKVAW_					0	0	0		ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS	ENSG00000164654|ENST00000340080|MIOS	ENSG00000164654|ENST00000340080|MIOS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3038635253906	2	471.792195	941.569838	0.056152	2.6492E-05	-4.258	-0.0020089	-4.2019	-0.0019824	471.790034279899	17.995	0.24841	17.789	17.614	17.863	-0.20669					8	4	2	0	0	0	0.027866	1	243	243		33.516	0	1	18933			34001	7303	23415	23463	39005	39005					0.0967155603646006
KPLTLGRIL	9	Unmodified	_KPLTLGRIL_					0	0	0		ENST00000531347.1_1_11:69918611-69918761:-|nuORF	ENST00000531347.1_1_11:69918611-69918761:-|nuORF	ENST00000531347.1_1_11:69918611-69918761:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8158264160156	2	505.839677	1009.6648	0.37425	0.00018931	1.4843	0.0007508	1.8585	0.00094011	505.84052726140135	68.276	0.12395	68.02	67.945	68.069	-0.25516					4	2	2	0	0	0	0.024541	1	7880	7880		23.042	3.6825	1	41043			34002	16256	23416	23464	39006	39006					0.16035489507669354
KPLVHKRTI	9	Unmodified	_KPLVHKRTI_					0	0	0			REV__nc|nan|Q6P387-2|C16orf46	REV__nc|nan|Q6P387-2|C16orf46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3274536132812	2	546.356025	1090.6975	-1.1272	-0.00061588	1.1359	0.00062061	0.0086658	4.7346E-06	546.3565460612908	57.342	0.62451	57.437	56.878	57.503	0.095306					35	16	3	0	0	0	0.024381	1	6361	6361		29.15	10.046	1	551820	+		34003	26020	23417	23465	39007	39007					0.15577696630498394
KPLVIGRLPDP	11	Unmodified	_KPLVIGRLPDP_					0	0	0		nc|ENSG00000179886|Q53EQ6-2|TIGD5;ENSG00000179886|ENST00000504548|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	nc|ENSG00000179886|Q53EQ6-2|TIGD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	602.87451171875	2	602.874248	1203.73394	0.47617	0.00028707	-0.631	-0.00038041	-0.15483	-9.3344E-05	602.8737456382777	63.777	0.71535	63.823	63.546	64.262	0.045502					54	19	4	0	0	0	0.90172	1	7407	7407		51.528	0.33506	1	2743200			34004	8934	23418	23466	39008	39008					0.140225287365638
KPLVPLKTP	9	Unmodified	_KPLVPLKTP_					0	0	0		ENST00000471771.5_1_13:28014269-28014434:-|nuORF	ENST00000471771.5_1_13:28014269-28014434:-|nuORF	ENST00000471771.5_1_13:28014269-28014434:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2721252441406	2	496.828778	991.643003	0.33494	0.00016641	-0.20298	-0.00010084	0.13196	6.5564E-05	496.82848422626324	90.324	1.4438	90.337	89.467	90.911	0.013443					75	34	3	0	0	0	0.024381	1	11238	11238		45.952	7.1458	1	289560			34005	14965	23419	23467	39009	39009					0.14684684759083666
KPLVPLKTP	9	Unmodified	_KPLVPLKTP_					0	0	0		ENST00000471771.5_1_13:28014269-28014434:-|nuORF	ENST00000471771.5_1_13:28014269-28014434:-|nuORF	ENST00000471771.5_1_13:28014269-28014434:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.828778	991.643003	-0.59246	-0.00029435	0.78766	0.00039133	0.1952	9.6982E-05	496.8290016594646	90.232	1.1565	90.232	89.689	90.845	0	-0.082886	0.00048025	NaN	45.952	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429740			34006	14965	23419	23467							0.14684684759083666
KPMIVTSDR	9	Unmodified	_KPMIVTSDR_					0	0	0		ENSG00000147799|ENST00000377307|ARHGAP39;nc|ENSG00000147799|Q9C0H5|ARHGAP39;ENST00000528810.1_1_8:145769259-145771014:-|nuORF	ENSG00000147799|ENST00000377307|ARHGAP39	ENSG00000147799|ENST00000377307|ARHGAP39	MSMS	OPSCC_39_ClassI_Rep-1	1	523.786865234375	2	523.786784	1045.55902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.44	1	16.44	15.94	16.94	0								0	0	0	0.55222	1	64	64		45.972	1.8554	1				34007	5993	23420	23468	39010	39010					0.03805785599865885
KPMKEPLEKL	10	Unmodified	_KPMKEPLEKL_					0	0	0			REV__ENSG00000011465|ENST00000052754|DCN	REV__ENSG00000011465|ENST00000052754|DCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.9066162109375	3	404.905537	1211.69478	1.0447	0.00042302	1.8159	0.00073526	2.8606	0.0011583	404.906264810894	22.603	1.1513	22.677	22.365	23.516	0.073954					66	25	4	0	0	0	1.0177	1	781	781		43.651	2.2242	1	1438400	+		34008	19931	23421	23469	39011	39011					0.09740060390686267
KPMKNKPGP	9	Unmodified	_KPMKNKPGP_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7692565917969	2	498.786587	995.558621	0.90592	0.00045186	3.1786	0.0015854	4.0845	0.0020373	498.7879384332087	19.776	0.3463	19.576	19.355	19.701	-0.2001					13	6	3	0	0	0	0.024506	1	455	455		10.866	0	1	46107			34009	7521	23422	23470	39012	39012					0.06066410670678124
KPMLVTPLLL	10	Unmodified	_KPMLVTPLLL_					0	0	0			REV__ENST00000378566.5_1_9:35106854-35108271:-|nuORF	REV__ENST00000378566.5_1_9:35106854-35108271:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.8577270507812	2	562.859221	1123.70389	0.56463	0.00031781	-0.38054	-0.00021419	0.18408	0.00010361	562.8587063721718	106.65	0.37324	106.65	106.46	106.84	0					17	12	2	0	0	0	0.50466	1	13702	13702		87.754	11.585	1	110150	+		34010	31407	23423	23471	39013	39013					0.14698453747018903
KPNALEAKQKL	11	Unmodified	_KPNALEAKQKL_					0	0	0			REV__nc|ENSG00000073737|Q9BPW9-2|DHRS9	REV__nc|ENSG00000073737|Q9BPW9-2|DHRS9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2406005859375	3	413.918834	1238.73467	-0.17488	-7.2385E-05	0.37769	0.00015633	0.20281	8.3949E-05	413.91905180385214	33.861	0.52675	33.918	33.693	34.22	0.056572					22	12	3	0	0	0	0.024727	1	2453	2453		34.087	18.166	1	143460	+		34011	20509	23424	23472	39014	39014					0.12485323385612901
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.801025390625	2	498.801083	995.587613	-0.34447	-0.00017182	-0.24763	-0.00012352	-0.5921	-0.00029534	498.8009173910325	31.542	0.85191	31.542	31.257	32.109	0					48	20	3	0	0	0	0.15889	2	2103	2103;2127		97.473	17.254	1	2541200			34012	4566	23425	23473	39015;39016	39015					0.08964271291313253
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8007507324219	2	498.801083	995.587613	-0.29691	-0.0001481	-0.30939	-0.00015433	-0.6063	-0.00030243	498.80088189180435	31.436	0.97374	31.448	31.17	32.144	0.011799					55	23	3	0	0	0	0.17455	3	2091	2080;2091;2105		94.006	30.7	1	2786100			34013	4566	23425	23473	39017;39018;39019	39018					0.08964271291313253
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.8008728027344	2	498.801083	995.587613	-0.18121	-9.039E-05	-0.45234	-0.00022563	-0.63355	-0.00031602	498.8007800638663	31.236	1.0546	31.305	30.955	32.009	0.068962					51	25	3	0	0	0	0.22754	4	2016	2006;2016;2027;2042		85.359	22.381	1	2545600			34014	4566	23425	23473	39020;39021;39022;39023	39021					0.08964271291313253
KPNATQEEL	9	Unmodified	_KPNATQEEL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2638549804688	2	515.264196	1028.51384	-1.5661	-0.00080696	0.69784	0.00035957	-0.86826	-0.00044738	515.2645182835677	29.548	0.55022	29.548	29.223	29.773	0					47	13	4	0	0	0	0.067814	4	1809	1809;1818;1831;1844		122.18	15.168	1	4002000			34015	1808	23426	23474	39024;39025;39026;39027	39024					0.0007225833833217621
KPNATQEEL	9	Unmodified	_KPNATQEEL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.263916015625	2	515.264196	1028.51384	-0.62627	-0.00032269	-0.19783	-0.00010193	-0.82409	-0.00042463	515.2640588189395	29.523	0.5452	29.526	29.166	29.712	0.0031357					36	13	3	0	0	0	0.043667	4	1790	1790;1802;1816;1828		131.03	21.816	1	4088800			34016	1808	23426	23474	39028;39029;39030;39031	39028					0.0007225833833217621
KPNATQEEL	9	Unmodified	_KPNATQEEL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.263916015625	2	515.264196	1028.51384	-0.85565	-0.00044088	0.18966	9.7727E-05	-0.66598	-0.00034316	515.2642304533275	29.184	0.6241	29.263	28.865	29.489	0.078344					49	15	4	0	0	0	0.03666	3	1715	1706;1715;1738		136.27	38.795	1	4013100			34017	1808	23426	23474	39032;39033;39034	39033					0.0007225833833217621
KPNGPVLP	8	Unmodified	_KPNGPVLP_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.2306213378906	2	411.247621	820.480688	0.083758	3.4445E-05	-3.6766	-0.001512	-3.5929	-0.0014776	411.24648929960705	27.337	0.51112	27.324	27.134	27.645	-0.012981					19	13	2	0	0	0	0.027866	1	1507	1507		12.959	0	1	76361			34018	3943	23427	23475	39035	39035					0.06326721076936792
KPNKKARVL	9	Unmodified	_KPNKKARVL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.7903442382812	2	527.3482	1052.68185	-0.42888	-0.00022617	3.6439	0.0019216	3.215	0.0016954	527.3499901935314	59.965	0.70789	59.765	59.463	60.17	-0.20016					30	18	2	0	0	0	0.024436	1	6895	6895		30.504	6.3009	1	223280			34019	18734;10657	23428	23476	39036	39036					0.1576141011346408
KPNKKARVL	9	Unmodified	_KPNKKARVL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;ERCC6|p.V388Wfs*17|1|0.12|ENSG00000225830|chr10:49524268-49524268|C/-|frameshift_variant;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	527.3482	1052.68185	-0.13435	-7.0849E-05	3.16	0.0016664	3.0256	0.0015956	527.349668337354	59.614	0.6297	59.7	59.426	60.056	0.085682	-0.03702	-7.538E-05	NaN	30.504	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220570			34020	18734;10657	23428	23476							0.1576141011346408
KPNKRAKVI	9	Unmodified	_KPNKRAKVI_					0	0	0			REV__ENSG00000180488|ENST00000370791|MIGA1	REV__ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.7904663085938	2	527.3482	1052.68185	0.46202	0.00024364	2.8086	0.0014811	3.2707	0.0017248	527.3495294706439	59.745	0.69862	59.745	59.444	60.143	0					35	18	3	0	0	0	0.024506	1	6898	6898		30.504	0	1	260620	+		34021	27346	23429	23477	39037	39037					0.1576141011346408
KPNLTAEEY	9	Unmodified	_KPNLTAEEY_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2927856445312	2	532.766571	1063.51859	1.476	0.00078635	0.90111	0.00048008	2.3771	0.0012664	532.7668951158433	24.882	1.0053	24.71	23.902	24.907	-0.17151					31	22	2	0	0	0	0.024397	1	1080	1080		47.657	15.702	1	70661	+		34022	27091	23430	23478	39038	39038					-0.010628575189002731
KPNVLLQAR	9	Unmodified	_KPNVLLQAR_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3079223632812	2	519.824558	1037.63456	-0.13812	-7.1799E-05	0.28516	0.00014823	0.14704	7.6432E-05	519.8245928029719	49.677	0.87813	49.526	49.22	50.098	-0.1512					36	23	2	0	0	0	0.024436	1	5086	5086		30.504	1.3541	1	163300	+		34023	22242	23431	23479	39039	39039					0.11725130842478393
KPPEKGVVF	9	Unmodified	_KPPEKGVVF_					0	0	0			REV__nc|ENSG00000198586|Q9UKI8-4|TLK1;REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF;REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7945556640625	2	500.794935	999.575317	-0.071704	-3.5909E-05	1.1475	0.00057464	1.0757	0.00053873	500.79539648008245	66.623	1.22	66.623	66.348	67.568	0					71	32	3	0	0	0	1.0101	1	7915	7915		18.324	0	1	4883400	+		34024	36760;34550;28436	23432	23480	39040	39040					0.07551234828292763
KPPEPRPKLPK	11	Unmodified	_KPPEPRPKLPK_					0	0	0			REV__ENSG00000104427|ENST00000263849|ZC2HC1A	REV__ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.1863098144531	3	429.602957	1285.78704	0.089164	3.8305E-05	-3.6374	-0.0015626	-3.5482	-0.0015243	429.6014225032166	24.814	0.48029	24.599	24.463	24.943	-0.2151					16	10	2	0	0	0	0.024801	1	1160	1160		8.7993	0	1	145810	+		34025	21447	23433	23481	39041	39041					0.15557906519211429
KPPGLKATS	9	Unmodified	_KPPGLKATS_					0	0	0		ENSG00000135976|ENST00000420699|ANKRD36	ENSG00000135976|ENST00000420699|ANKRD36	ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.7720031738281	2	449.77146	897.528367	1.0266	0.00046174	-0.89546	-0.00040275	0.13115	5.8989E-05	449.77086870608395	19.976	1.2202	19.776	19.505	20.725	-0.2001					43	24	2	0	0	0	0.77768	1	481	481		40.778	5.1599	1	300300			34026	4965	23434	23482	39042	39042					0.07550375277128296
KPPGLKATS	9	Unmodified	_KPPGLKATS_					0	0	0		ENSG00000135976|ENST00000420699|ANKRD36	ENSG00000135976|ENST00000420699|ANKRD36	ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	449.77146	897.528367	0.26621	0.00011974	-0.14751	-6.6345E-05	0.11871	5.3391E-05	449.77126531580916	19.925	1.2644	19.762	19.428	20.693	-0.16286	-0.0067476	0.00024042	NaN	40.778	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347890			34027	4965	23434	23482							0.07550375277128296
KPPGSLAR	8	Unmodified	_KPPGSLAR_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.7132873535156	2	413.250695	824.486836	-0.15253	-6.3033E-05	0.12086	4.9944E-05	-0.031675	-1.309E-05	413.25074515608935	73.589	0.71923	73.312	72.926	73.645	-0.2769					21	17	2	0	0	0	0.027866	1	8616	8616		17.365	0	1	465180			34028	2992	23435	23483	39043	39043					0.06757239308467433
KPPGSLAR	8	Unmodified	_KPPGSLAR_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	413.250695	824.486836	-0.10929	-4.5163E-05	0.37744	0.00015598	0.26816	0.00011082	413.2508241822187	73.38	0.63429	73.189	72.927	73.561	-0.19026	-0.074371	-5.2017E-05	NaN	11.511	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464580			34029	2992	23435	23483							0.06757239308467433
KPPKKMGT	8	Unmodified	_KPPKKMGT_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.7646789550781	2	443.762581	885.510608	-0.14884	-6.6048E-05	4.3377	0.0019249	4.1888	0.0018588	443.7644792525182	92.057	0.9771	92.048	91.708	92.686	-0.0082932					52	23	4	0	0	0	1.0338	1	11641	11641		31.955	2.8053	1	1086800			34030	3160	23436	23484	39044	39044					0.0632733675063264
KPPKKMGT	8	Unmodified	_KPPKKMGT_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.762581	885.510608	0.46371	0.00020578	3.5843	0.0015906	4.048	0.0017964	443.7642144116737	92.042	1.1449	92.052	91.658	92.803	0.0094147	0.011514	-0.0008618	NaN	31.955	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1013000			34031	3160	23436	23484							0.0632733675063264
KPPKKMGT	8	Unmodified	_KPPKKMGT_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.762581	885.510608	-1.7072	-0.00075757	5.7077	0.0025328	4.0005	0.0017753	443.7652056799697	92.199	1.2086	92.055	91.661	92.869	-0.14356	0.015108	0.0010227	NaN	31.955	54	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	837030			34032	3160	23436	23484							0.0632733675063264
KPPKKMGT	8	Unmodified	_KPPKKMGT_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.762581	885.510608	-0.27243	-0.0001209	3.9991	0.0017746	3.7267	0.0016538	443.76455588962835	92.162	0.86963	92.04	91.717	92.587	-0.12241	-0.00032261	-0.00049369	NaN	31.955	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647650			34033	3160	23436	23484							0.0632733675063264
KPPKKMGT	8	Unmodified	_KPPKKMGT_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.762581	885.510608	0.39291	0.00017436	3.6348	0.001613	4.0277	0.0017873	443.7642819829715	92.183	0.91666	92.042	91.704	92.62	-0.14131	0.001956	-0.00081703	NaN	31.955	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542940			34034	3160	23436	23484							0.0632733675063264
KPPLFFER	8	Unmodified	_KPPLFFER_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2929077148438	2	517.295102	1032.57565	-0.6982	-0.00036118	-3.9171	-0.0020263	-4.6153	-0.0023875	517.2930434943544	32.13	0.70465	32.13	31.789	32.494	0					54	17	4	0	0	0	0.56592	1	2189	2189		79.451	9.8234	1	7851200	+		34035	23824	23437	23485	39045	39045					0.06066654548112638
KPPLFFER	8	Unmodified	_KPPLFFER_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2927856445312	2	517.295102	1032.57565	-0.47649	-0.00024648	-4.1333	-0.0021382	-4.6098	-0.0023846	517.2929264877076	31.953	0.8681	31.965	31.545	32.413	0.011797					54	18	4	0	0	0	0.68164	1	2144	2144		68.787	12.066	1	7690300	+		34036	23824	23437	23485	39046	39046					0.06066654548112638
KPPLISNCGFD	11	Unmodified	_KPPLISNCGFD_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.7958984375	2	595.797349	1189.58014	-0.66078	-0.00039369	-1.6297	-0.00097097	-2.2905	-0.0013647	595.7962758614691	61.063	1.0491	60.857	60.543	61.592	-0.20599					65	25	4	0	0	0	0.96309	1	6817	6817		45.022	7.8631	1	4030500	+		34037	20414	23438	23486	39047	39047					-0.007062490912858266
KPPPKRKS	8	Unmodified	_KPPPKRKS_					0	0	0			REV__ENSG00000130165|ENST00000252445|ELOF1	REV__ENSG00000130165|ENST00000252445|ELOF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7690734863281	2	469.300719	936.586885	0.82122	0.0003854	-0.65509	-0.00030743	0.16613	7.7966E-05	469.30032034853264	25.34	0.66799	25.42	25.254	25.922	0.08009					26	15	2	0	0	0	0.027866	1	1117	1117		17.365	2.7009	1	139860	+		34038	23086	23439	23487	39048	39048					0.11605476642273516
KPPPSPDIT	9	Unmodified	_KPPPSPDIT_					0	0	0		ENSG00000121289|ENST00000305768|CEP89;nc|ENSG00000121289|Q96ST8-3|CEP89	ENSG00000121289|ENST00000305768|CEP89	ENSG00000121289|ENST00000305768|CEP89	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.25616455078125	2	476.260925	950.507297	-0.085732	-4.0831E-05	0.36048	0.00017168	0.27474	0.00013085	476.26080021902294	41.935	0.51174	41.705	41.354	41.865	-0.23029					22	13	2	0	0	0	0.024457	1	3691	3691		15.642	4.1308	1	236370			34039	3860	23440	23488	39049	39049					0.030063651776117695
KPPQPPSN	8	Unmodified	_KPPQPPSN_					0	0	0			REV__ENST00000521272.5_1_8:102214575-102216903:-|nuORF	REV__ENST00000521272.5_1_8:102214575-102216903:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.7317810058594	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	1.0239	1	12319	12319		33.516	3.0119	1	1517800	+		34040	34313	23441	23489	39050	39050					0.012929426918958598
KPPRAGGE	8	Unmodified	_KPPRAGGE_					0	0	0		ENST00000333602.10_1_3:195635470-195635845:-|nuORF	ENST00000333602.10_1_3:195635470-195635845:-|nuORF	ENST00000333602.10_1_3:195635470-195635845:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	2	406.224677	810.434801	-0.36485	-0.00014821	0.95943	0.00038975	0.59458	0.00024153	406.22512154090447	27.717	1.1807	27.56	27.018	28.198	-0.15664					54	28	3	0	0	0	0.027866	1	1470	1470		24.203	18.282	1	563910			34041	12368	23442	23490	39051	39051					0.022000758947115173
KPPRPRII	8	Unmodified	_KPPRPRII_					0	0	0			REV__nc|ENSG00000198431|Q16881-2|TXNRD1	REV__nc|ENSG00000198431|Q16881-2|TXNRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.7908630371094	2	488.824361	975.634169	-0.50563	-0.00024717	1.2774	0.00062443	0.77178	0.00037726	488.8248039833672	22.578	0.27158	22.392	22.236	22.507	-0.18539					7	5	2	0	0	0	0.027866	1	803	803		26.796	0	1	29440	+		34042	34443	23443	23491	39052	39052					0.14537755913283945
KPPRRRRRRER	11	Unmodified	_KPPRRRRRRER_					0	0	0		ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3058471679688	3	521.661085	1561.96143	0.37842	0.00019741	-0.54229	-0.00028289	-0.16387	-8.5484E-05	521.9939366120034	47.285	0.17831	47.132	47.052	47.231	-0.15301					5	4	2	0	0	0	0.024898	1	4723	4723		3.026	0	1	77248			34043	11386	23444	23492	39053	39053					0.20292344507765847
KPPSQQQKNT	10	Unmodified	_KPPSQQQKNT_					0	0	0			REV__ENSG00000198265|ENST00000358691|HELZ	REV__ENSG00000198265|ENST00000358691|HELZ	MSMS	OPSCC_40_ClassI_Rep-3	6	578.310791015625	2	578.309469	1154.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.16	1	111.02	110.52	111.52	-0.1469								0	0	0	0.76031	1	13571	13571		24.519	0	1		+		34044	28406	23445	23493	39054	39054					0.033267273866158575
KPPTAQPDFP	10	Unmodified	_KPPTAQPDFP_					0	0	0		ENST00000589874.2_1_19:1432091-1433000:+|nuORF;nc|ENSG00000071626|Q96EP5-2|DAZAP1;ENSG00000071626|ENST00000233078|DAZAP1	ENST00000589874.2_1_19:1432091-1433000:+|nuORF	ENST00000589874.2_1_19:1432091-1433000:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2800903320312	2	549.284931	1096.55531	-0.17812	-9.7838E-05	2.1959	0.0012062	2.0177	0.0011083	549.2861373689913	53.131	0.52945	52.941	52.754	53.283	-0.18982					22	13	2	0	0	0	0.03519	1	5538	5538		37.812	4.9991	1	340250			34045	17317	23446	23494	39055	39055					0.010894390976545765
KPPVSKILS	9	Unmodified	_KPPVSKILS_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.24945068359375	2	484.810585	967.606617	-1.214	-0.00058855	0.98814	0.00047906	-0.22583	-0.00010949	484.81108214964706	79.803	0.29587	79.631	79.484	79.78	-0.17226					9	6	2	0	0	0	0.024405	1	9877	9877		35.618	12.576	1	48509			34046	6747	23447	23495	39056	39056					0.12151807862392161
KPPVTAGSR	9	Unmodified	_KPPVTAGSR_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2354431152344	2	456.766709	911.518865	-0.16916	-7.7269E-05	1.0332	0.00047194	0.86405	0.00039467	456.7671681109249	22.189	0.91733	21.987	21.276	22.194	-0.20199					24	18	2	0	0	0	0.02435	1	755	755		34.173	5.023	1	105910	+		34047	22540	23448	23496	39057	39057					0.05956606991617264
KPPVTAGSR	9	Unmodified	_KPPVTAGSR_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.766709	911.518865	0.50138	0.00022901	-0.28957	-0.00013227	0.21181	9.6746E-05	456.76656796101327	22.079	0.37884	21.891	21.628	22.007	-0.18894	-0.24656	-0.00059971	NaN	34.173	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67626	+		34048	22540	23448	23496							0.05956606991617264
KPPVYAKKKIA	11	Unmodified	_KPPVYAKKKIA_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.901123046875	2	621.900266	1241.78598	0.37707	0.0002345	0.53999	0.00033582	0.91706	0.00057032	621.9004326010249	105.36	0.44228	105.24	105.03	105.48	-0.12444					26	10	3	0	0	0	1.0923	1	13121	13121		13.454	0	1	1613900	+		34049	21946	23449	23497	39058	39058					0.1747569215033309
KPPYPPYIAQA	11	Unmodified	_KPPYPPYIAQA_					0	0	0			REV__nc|ENSG00000111271|Q6JQN1-5|ACAD10	REV__nc|ENSG00000111271|Q6JQN1-5|ACAD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2315673828125	3	415.560646	1243.66011	-0.81287	-0.0003378	1.7023	0.00070741	0.88944	0.00036962	415.561365802246	21.179	0.44524	20.966	20.624	21.069	-0.2128					13	8	2	0	0	0	0.024751	1	603	603		27.644	13.401	1	18861	+		34050	36565	23450	23498	39059	39059					0.04802560574239578
KPQAAKRDAWP	11	Unmodified	_KPQAAKRDAWP_					0	0	0			REV__nc|ENSG00000175866|Q9UQB8-3|BAIAP2	REV__nc|ENSG00000175866|Q9UQB8-3|BAIAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5472717285156	3	423.235045	1266.6833	-0.53963	-0.00022839	0.61086	0.00025854	0.071229	3.0147E-05	423.2353279421885	29.692	1.0205	29.519	29.025	30.046	-0.17258					56	23	4	0	0	0	0.024792	1	1783	1783		18.531	2.5243	1	436120	+		34051	26978	23451	23499	39060	39060					0.060629994115288355
KPQAEPPPP	9	Unmodified	_KPQAEPPPP_					0	0	0		nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B	nc|ENSG00000116514|Q6ZMZ0-2|RNF19B	nc|ENSG00000116514|Q6ZMZ0-2|RNF19B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.277099609375	2	480.761092	959.507631	-0.39804	-0.00019136	0.042853	2.0602E-05	-0.35519	-0.00017076	480.76073056864516	48.544	0.61814	48.446	48.15	48.768	-0.097553					26	16	2	0	0	0	0.024412	1	4818	4818		31.955	0	1	390550			34052	3551	23452	23500	39061	39061					0.026257848974637454
KPQAEPPPP	9	Unmodified	_KPQAEPPPP_					0	0	0		nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B	nc|ENSG00000116514|Q6ZMZ0-2|RNF19B	nc|ENSG00000116514|Q6ZMZ0-2|RNF19B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2769470214844	2	480.761092	959.507631	-0.0027073	-1.3016E-06	-0.43371	-0.00020851	-0.43641	-0.00020981	480.76078900165066	48.661	0.64914	48.479	48.234	48.883	-0.18206					25	17	2	0	0	0	0.024487	1	4830	4830		24.203	4.8428	1	277890			34053	3551	23452	23500	39062	39062					0.026257848974637454
KPQAKDAPSYS	11	Unmodified	_KPQAKDAPSYS_					0	0	0		ENST00000525484.5_1_11:8988185-8989463:+|nuORF	ENST00000525484.5_1_11:8988185-8989463:+|nuORF	ENST00000525484.5_1_11:8988185-8989463:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.3218994140625	2	596.303852	1190.59315	-0.46255	-0.00027582	-2.1321	-0.0012714	-2.5946	-0.0015472	596.8053551376166	50.575	0.18617	50.295	50.145	50.332	-0.27977					5	4	2	0	0	0	0.024778	1	5116	5116		52.937	6.9645	1	80074			34054	16096	23453	23501	39063	39063					0.0054790529247839
KPQFIHLES	9	Unmodified	_KPQFIHLES_					0	0	0			REV__ZNF525|p.F448Pfs*6|1|0.08|ENSG00000203326|chr19:53381920-53381936|CTTCAGTCAGGAGTTAT/-|frameshift_variant	REV__ZNF525|p.F448Pfs*6|1|0.08|ENSG00000203326|chr19:53381920-53381936|CTTCAGTCAGGAGTTAT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7988891601562	2	549.800749	1097.58694	-0.82567	-0.00045396	-3.1639	-0.0017395	-3.9896	-0.0021935	549.7990018273978	21.991	1.457	21.916	21.418	22.875	-0.075296					105	30	5	0	0	0	0.082191	1	741	741		116.9	3.492	1	3066200	+		34055	28534	23454	23502	39064	39064					0.04205431851596586
KPQGQRTSL	9	Unmodified	_KPQGQRTSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7882080078125	2	507.788173	1013.56179	-0.19823	-0.00010066	-0.15796	-8.021E-05	-0.35619	-0.00018087	507.7881070149731	19.806	1.245	19.806	19.556	20.801	0					66	25	5	0	0	0	0.091713	4	467	447;455;467;480		113.41	41.333	1	2804100			34056	7142	23455	23503	39065;39066;39067;39068	39067					0.05555377049051913
KPQGQRTSL	9	Unmodified	_KPQGQRTSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7882080078125	2	507.788173	1013.56179	-0.41455	-0.0002105	0.16044	8.1469E-05	-0.25411	-0.00012903	507.7882805000786	20.046	1.148	19.941	19.557	20.705	-0.10477					61	23	4	0	0	0	0.17822	2	487	466;487		93.195	13.744	1	2020100			34057	7142	23455	23503	39069;39070	39070					0.05555377049051913
KPQGRPPQP	9	Unmodified	_KPQGRPPQP_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7801208496094	2	502.785433	1003.55631	-0.49292	-0.00024783	-1.5495	-0.00077907	-2.0424	-0.0010269	502.784681866693	24.363	0.48469	24.363	24.123	24.608	0					18	10	2	0	0	0	0.024263	1	1035	1035		26.693	1.2427	1	195370	+		34058	22505	23456	23504	39071	39071					0.05467698257223219
KPQGRPPQP	9	Unmodified	_KPQGRPPQP_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7427062988281	2	502.785433	1003.55631	-1.2104	-0.00060859	-0.23786	-0.00011959	-1.4483	-0.00072818	502.78515315099395	25.019	0.5751	24.985	24.546	25.121	-0.034395					23	12	2	0	0	0	0.024436	1	1071	1071		23.042	4.7181	1	234800	+		34059	22505	23456	23504	39072	39072					0.05467698257223219
KPQGRPPQP	9	Unmodified	_KPQGRPPQP_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2649230957031	2	502.785433	1003.55631	0.23132	0.0001163	-2.5324	-0.0012733	-2.3011	-0.001157	502.78428233211963	24.23	0.49924	24.308	24.048	24.547	0.078344					16	9	2	0	0	0	0.023817	1	1013	1013		60.972	10.947	1	189140	+		34060	22505	23456	23504	39073	39073					0.05467698257223219
KPQGRPPQP	9	Unmodified	_KPQGRPPQP_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.785433	1003.55631	0.29404	0.00014784	-1.8038	-0.00090693	-1.5098	-0.00075909	502.7843890132451	24.904	0.6251	24.982	24.547	25.173	0.078344	0.0126	-0.00097134	NaN	29.15	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241930	+		34061	22505	23456	23504							0.05467698257223219
KPQGRPPQP	9	Unmodified	_KPQGRPPQP_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.785433	1003.55631	-0.22678	-0.00011402	2.5439	0.001279	2.3171	0.001165	502.7845904388552	24.763	0.55121	24.548	24.257	24.809	-0.2151	0.19377	0.0040846	NaN	51.335	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96678	+		34062	22505	23456	23504							0.05467698257223219
KPQGRPPQP	9	Unmodified	_KPQGRPPQP_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.785433	1003.55631	-0.23128	-0.00011628	-1.3442	-0.00067585	-1.5755	-0.00079214	502.7846645761631	24.441	0.33618	24.266	24.089	24.425	-0.17484	-0.087972	0.00017481	NaN	51.335	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82971	+		34063	22505	23456	23504							0.05467698257223219
KPQGRPPQP	9	Unmodified	_KPQGRPPQP_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.785433	1003.55631	1.8041	0.00090709	-3.2023	-0.0016101	-1.3982	-0.000703	502.7837609731836	24.475	0.47522	24.294	24.072	24.547	-0.18089	-0.06048	-0.0016937	NaN	51.335	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69957	+		34064	22505	23456	23504							0.05467698257223219
KPQGTNPVM	9	Unmodified	_KPQGTNPVM_					0	0	0			REV__ZSWIM3|p.E611K|1|0.19|ENSG00000132801|chr20:45878389-45878389|G/A|missense_variant	REV__ZSWIM3|p.E611K|1|0.19|ENSG00000132801|chr20:45878389-45878389|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.24603271484375	2	486.252577	970.490601	2.0209	0.00098266	-2.0206	-0.00098254	0.0002366	1.1505E-07	486.25146362170534	23.492	1.1189	23.301	22.942	24.061	-0.19117					45	25	2	0	0	0	0.024506	1	954	954		38.806	10.924	1	216490	+		34065	37829	23457	23505	39074	39074					0.004175410200218721
KPQIVWLPLLV	11	Unmodified	_KPQIVWLPLLV_					0	0	0			REV__ENST00000527124.1_1_10:5756116-5756182:+|nuORF	REV__ENST00000527124.1_1_10:5756116-5756182:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.8841857910156	3	435.947953	1304.82203	0.086829	3.7853E-05	1.3654	0.00059524	1.4522	0.0006331	435.9494943806033	18.137	0.84219	17.93	17.714	18.556	-0.20669					25	16	3	0	0	0	0.024792	1	277	277		24.232	9.5381	1	43946	+		34066	34467	23458	23506	39075	39075					0.18181149327165258
KPQIVWLPLLV	11	Unmodified	_KPQIVWLPLLV_					0	0	0			REV__ENST00000527124.1_1_10:5756116-5756182:+|nuORF	REV__ENST00000527124.1_1_10:5756116-5756182:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	435.947953	1304.82203	0.99377	0.00043323	2.3588	0.0010283	3.3526	0.0014616	435.9490795003169	18.07	0.39375	17.914	17.705	18.099	-0.15637	-0.026623	0.00077685	NaN	18.531	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64212	+		34067	34467	23458	23506							0.18181149327165258
KPQIVWLPLLV	11	Unmodified	_KPQIVWLPLLV_					0	0	0			REV__ENST00000527124.1_1_10:5756116-5756182:+|nuORF	REV__ENST00000527124.1_1_10:5756116-5756182:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	435.947953	1304.82203	3.9264	0.0017117	-1.1541	-0.00050312	2.7724	0.0012086	435.94780643216075	18.22	0.49791	17.978	17.726	18.224	-0.24256	0.03715	-0.0038175	NaN	18.531	20	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36169	+		34068	34467	23458	23506							0.18181149327165258
KPQKAVLL	8	Unmodified	_KPQKAVLL_					0	0	0		nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;ENSG00000164398|ENST00000651883|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2587890625	2	448.80002	895.585488	0.16696	7.493E-05	3.401	0.0015264	3.568	0.0016013	448.8004695844938	89.138	0.20618	89.001	88.862	89.068	-0.13761					6	4	2	0	0	0	0.027866	1	10857	10857		8.2313	3.915	1	26916			34069	7272	23459	23507	39076	39076					0.1335184255351578
KPQKILDL	8	Unmodified	_KPQKILDL_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.80267333984375	2	477.80276	953.590967	-0.4263	-0.00020369	0.87342	0.00041732	0.44713	0.00021364	477.8027477890576	33.586	0.69859	33.386	33.133	33.831	-0.20019					51	17	5	0	0	0	0.83003	1	2397	2397		56.721	3.3696	1	2417400	+		34070	20719	23460	23508	39077	39077					0.11231521345325746
KPQKKGIT	8	Unmodified	_KPQKKGIT_					0	0	0			REV__nc|ENSG00000155966|P51816-7|AFF2	REV__nc|ENSG00000155966|P51816-7|AFF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2066650390625	2	450.287277	898.560001	-0.54726	-0.00024642	-0.54162	-0.00024388	-1.0889	-0.00049031	450.2866236896496	22.578	0.54834	22.392	22.189	22.738	-0.18539					17	11	2	0	0	0	0.027866	1	843	843		26.693	0	1	28420	+		34071	25041	23461	23509	39078	39078					0.10666368031081674
KPQKSGHG	8	Unmodified	_KPQKSGHG_					0	0	0		ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5218200683594	2	419.730126	837.4457	-0.48755	-0.00020464	0.45767	0.0001921	-0.02988	-1.2542E-05	419.73037563465016	25.171	0.60806	24.944	24.623	25.231	-0.22683					15	13	2	0	0	0	0.027866	1	1142	1142		6.7355	0	1	56027			34072	10956	23462	23510	39079	39079					0.020474782690030224
KPQMHMMM	8	Oxidation (M)	_KPQMHM(Oxidation (M))MM_		KPQM(0.001)HM(0.796)M(0.101)M(0.101)		KPQM(-29)HM(9)M(-9)M(-9)	0	0	1			REV__ENSG00000197746|ENST00000394936|PSAP	REV__ENSG00000197746|ENST00000394936|PSAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2210693359375	2	525.223593	1048.43263	-0.31655	-0.00016626	-4.4579	-0.0023414	-4.7744	-0.0025076	525.2211660620886	28.059	0.71141	27.907	27.689	28.401	-0.15195					47	17	4	0	0	0	0.96719	1	1596	1596		42.474	14.592	4	1167600	+		34073	28342	23463	23511	39080	39080		837			-0.08964503492916265
KPQPPAPPSL	10	Unmodified	_KPQPPAPPSL_					0	0	0		ENST00000301011.9_2_16:88697860-88698088:+|nuORF	ENST00000301011.9_2_16:88697860-88698088:+|nuORF	ENST00000301011.9_2_16:88697860-88698088:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2927856445312	2	516.297842	1030.58113	-0.79858	-0.00041231	-1.5832	-0.00081742	-2.3818	-0.0012297	516.8005093069065	32.336	0.6452	32.399	32.045	32.69	0.062885					39	16	3	0	0	0	0.03519	1	2130	2130		27.882	2.3082	1	712160			34074	11916	23464	23512	39081	39081					0.06706333339934645
KPQPPGLLQ	9	Unmodified	_KPQPPGLLQ_					0	0	0		ENST00000244533.7_2_6:43402405-43403837:+|nuORF	ENST00000244533.7_2_6:43402405-43403837:+|nuORF	ENST00000244533.7_2_6:43402405-43403837:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.2928466796875	2	489.292559	976.570566	-0.21002	-0.00010276	0.36266	0.00017745	0.15264	7.4686E-05	489.2925417665161	37.327	0.83635	37.134	36.851	37.687	-0.193					54	21	3	0	0	0	0.67687	1	2996	2996		47.657	8.8512	1	1774700			34075	11302	23465	23513	39082	39082					0.0813435068552053
KPQPRIVK	8	Unmodified	_KPQPRIVK_					0	0	0			REV__ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	REV__ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2571105957031	2	483.316369	964.618185	0.043684	2.1113E-05	-0.30088	-0.00014542	-0.25719	-0.00012431	483.3160705535269	36.63	0.74404	36.63	36.298	37.042	0					29	19	2	0	0	0	0.027866	1	2976	2976		19.36	7.849	1	225590	+		34076	19147	23466	23514	39083	39083					0.13446049676360872
KPQQDEICDAF	11	Unmodified	_KPQQDEICDAF_					0	0	0		nc|ENSG00000205089|Q6ZMN8-3|CCNI2	nc|ENSG00000205089|Q6ZMN8-3|CCNI2	nc|ENSG00000205089|Q6ZMN8-3|CCNI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.88604736328125	3	431.864177	1292.5707	-0.5477	-0.00023653	-4.3897	-0.0018958	-4.9374	-0.0021323	432.1966425377215	21.724	0.37892	21.724	21.537	21.916	0					11	7	2	0	0	0	0.024782	1	720	720		14.086	0	1	11278			34077	18669	23467	23515	39084	39084					-0.06388062167457065
KPQQRDKL	8	Unmodified	_KPQQRDKL_					0	0	0			REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF;REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7664489746094	2	506.79854	1011.58253	-0.494	-0.00025036	-1.0941	-0.00055448	-1.5881	-0.00080484	507.2996805954484	36.165	0.83484	36.203	35.927	36.762	0.03804					41	23	3	0	0	0	0.027866	1	2790	2790		24.203	0	1	213910	+		34078	33532;22206	23468	23516	39085	39085					0.0771996742871579
KPQRPKNSL	9	Unmodified	_KPQRPKNSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.3191528320312	2	534.31964	1066.62473	0.61288	0.00032747	-0.94869	-0.0005069	-0.33581	-0.00017943	534.3190764759476	19.243	0.68908	19.243	18.774	19.463	0					30	13	4	0	0	0	0.56934	1	379	379		54.776	1.8396	1	152810			34079	4534	23469	23517	39086	39086					0.09407942837083283
KPQRPKNSL	9	Unmodified	_KPQRPKNSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.3187255859375	2	534.31964	1066.62473	-0.52914	-0.00028273	0.33121	0.00017697	-0.19794	-0.00010576	534.3197092660301	19.442	0.63838	19.323	18.953	19.591	-0.11872					25	12	3	0	0	0	0.50848	1	400	400		58.782	5.4305	1	140700			34080	4534	23469	23517	39087	39087					0.09407942837083283
KPQRVTEP	8	Unmodified	_KPQRVTEP_					0	0	0		ENST00000554170.1_1_14:104177568-104180465:-|nuORF;ENST00000553332.5_1_14:104177568-104181820:-|nuORF;ENST00000553264.5_1_14:104177568-104178091:-|nuORF	ENST00000554170.1_1_14:104177568-104180465:-|nuORF	ENST00000554170.1_1_14:104177568-104180465:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7718200683594	2	477.771991	953.529429	0.15539	7.424E-05	-0.11317	-5.4071E-05	0.042215	2.0169E-05	477.7718102316529	24.702	0.66748	24.702	24.341	25.009	0					42	14	4	0	0	0	0.95679	1	1101	1101		44.117	1.6423	1	587830			34081	16634	23470	23518	39088	39088					0.0508058964603606
KPQSIFKKAM	10	Unmodified	_KPQSIFKKAM_					0	0	0		ENST00000509377.1_3_4:77172961-77230323:+|nuORF	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3433227539062	2	589.341726	1176.6689	-1.6043	-0.00094547	3.4637	0.0020413	1.8594	0.0010958	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0271	1	11744	11744		42.396	12.078	1	12648000			34082	15803	23471	23519	39089	39089					0.08763210939059718
KPQSIFKKAM	10	Unmodified	_KPQSIFKKAM_					0	0	0		ENST00000509377.1_3_4:77172961-77230323:+|nuORF	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3434448242188	2	589.341726	1176.6689	0.92698	0.00054631	0.37938	0.00022358	1.3064	0.00076989	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0236	1	11471	11471		42.864	0.46813	1	4746700			34083	15803	23471	23519	39090	39090					0.08763210939059718
KPQSIFKKAM	10	Unmodified	_KPQSIFKKAM_					0	0	0		ENST00000509377.1_3_4:77172961-77230323:+|nuORF	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	ENST00000509377.1_3_4:77172961-77230323:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3432006835938	2	589.341726	1176.6689	-0.17644	-0.00010399	2.489	0.0014669	2.3126	0.0013629	589.343094607947	95.492	2.0638	95.369	94.554	96.618	-0.12251					103	47	4	0	0	0	1.1088	1	11806	11806		31.53	5.9558	1	959980			34084	15803	23471	23519	39091	39091					0.08763210939059718
KPQSKELTL	9	Unmodified	_KPQSKELTL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.30810546875	2	522.308406	1042.60226	-1.4125	-0.00073776	0.70283	0.0003671	-0.70966	-0.00037066	522.3086509398721	31.097	1.0349	31.097	30.675	31.71	0					64	24	4	0	0	0	0.013065	3	2053	2043;2053;2067		171.53	66.959	1	2248600			34085	2327	23472	23520	39092;39093;39094	39093					0.08266298648823067
KPQSKELTL	9	Unmodified	_KPQSKELTL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3084106445312	2	522.308406	1042.60226	-0.52522	-0.00027433	-0.13692	-7.1515E-05	-0.66214	-0.00034584	522.308191195218	31.012	0.91778	31.024	30.627	31.545	0.011797					64	21	4	0	0	0	0.01388	2	2031	2018;2031		180.87	76.123	1	2242300			34086	2327	23472	23520	39095;39096	39096					0.08266298648823067
KPQSKELTL	9	Unmodified	_KPQSKELTL_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.30859375	2	522.308406	1042.60226	-0.53689	-0.00028042	-0.20153	-0.00010526	-0.73842	-0.00038569	522.3082130298409	30.754	0.94812	30.828	30.502	31.45	0.074316					57	22	4	0	0	0	0.013293	3	1944	1944;1955;1970		176.09	62.675	1	2070000			34087	2327	23472	23520	39097;39098;39099	39097					0.08266298648823067
KPQSRKRHS	9	Unmodified	_KPQSRKRHS_					0	0	0			REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	REV__ENST00000589104.5_1_19:5070919-5151519:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.280029296875	2	562.325788	1122.63702	-1.1324	-0.00063676	1.7964	0.0010102	0.66405	0.00037341	562.8284524204801	38.976	0.49339	38.811	38.659	39.153	-0.16458					15	13	2	0	0	0	0.024541	1	3308	3308		9.1829	1.3784	1	134110	+		34088	22944	23473	23521	39100	39100					0.08060979300148574
KPQTKLLIL	9	Unmodified	_KPQTKLLIL_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.355224609375	2	527.35516	1052.69577	-1.2488	-0.00065854	0.96905	0.00051103	-0.27971	-0.0001475	527.3555657462357	50.33	1.1194	50.33	49.986	51.105	0					89	32	5	0	0	0	0.03849	3	5265	5255;5265;5279		134.81	42.546	1	6732700			34089	18628;1455	23474	23522	39101;39102;39103	39102					0.17152642821906738
KPQTKLLIL	9	Unmodified	_KPQTKLLIL_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3549194335938	2	527.35516	1052.69577	-0.3151	-0.00016617	0.10129	5.3417E-05	-0.21381	-0.00011275	527.3550896040822	50.499	1.1582	50.35	50.033	51.191	-0.14916					99	33	5	0	0	0	0.10174	3	5261	5261;5271;5291		110.12	24.76	1	6516600			34090	18628;1455	23474	23522	39104;39105;39106	39104					0.17152642821906738
KPQTKLLIL	9	Unmodified	_KPQTKLLIL_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3552856445312	2	527.35516	1052.69577	0.27352	0.00014424	-0.60748	-0.00032036	-0.33396	-0.00017612	527.3547373713369	50.201	1.2292	50.282	49.954	51.183	0.080994					88	35	4	0	0	0	0.077175	2	5162	5162;5172		118.74	38.156	1	6828400			34091	18628;1455	23474	23522	39107;39108	39107					0.17152642821906738
KPRAGAANSQL	11	Unmodified	_KPRAGAANSQL_					0	0	0		ENSG00000157895|ENST00000288757|C12orf43;ENST00000508193.2_1_12:121444088-121454277:-|nuORF	ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	MSMS	OPSCC_39_ClassI_Rep-1	1	556.811767578125	2	556.812179	1111.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.452	1	21.452	20.952	21.952	0								0	0	0	0.77556	1	662	662		67.494	6.5217	1				34092	6629	23475	23523	39109	39109					0.05846450969079342
KPRAGAANSQL	11	Unmodified	_KPRAGAANSQL_					0	0	0		ENSG00000157895|ENST00000288757|C12orf43;ENST00000508193.2_1_12:121444088-121454277:-|nuORF	ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.81201171875	2	556.812179	1111.60981	-0.18519	-0.00010312	4.3844	0.0024413	4.1992	0.0023381	557.3167727157486	21.499	1.1117	21.57	21.106	22.218	0.071487					71	22	5	0	0	0	0.82076	1	614	614		56.434	6.9922	1	552860			34093	6629	23475	23523	39110	39110					0.05846450969079342
KPRCLRLGK	9	Unmodified	_KPRCLRLGK_					0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3059692382812	2	535.834403	1069.65425	-0.81181	-0.000435	-3.0892	-0.0016553	-3.901	-0.0020903	535.8325238221246	78.526	0.70802	78.542	78.235	78.943	0.015907					49	16	4	0	0	0	0.024541	1	9608	9608		23.042	0	1	1015400	+		34094	25423	23476	23524	39111	39111					0.12221183581573314
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.3139038085938	2	565.31422	1128.61389	-0.63743	-0.00036035	-0.91162	-0.00051535	-1.5491	-0.0008757	565.3141364700733	36.544	1.6732	36.544	36.129	37.803	0					141	45	6	0	0	0	0.10407	6	2888	2888;2897;2909;2921;2933;2945		134.77	44.396	1	29221000			34095	3431	23477	23525	39112;39113;39114;39115;39116;39117	39112					0.05472495672142941
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.313720703125	2	565.31422	1128.61389	-0.95477	-0.00053974	-0.61013	-0.00034491	-1.5649	-0.00088466	565.3143763865894	36.396	1.6804	36.354	35.963	37.643	-0.042454					152	45	6	0	0	0	0.029455	6	2849	2849;2857;2869;2881;2893;2906		155.58	45.465	1	28533000			34096	3431	23477	23525	39118;39119;39120;39121;39122;39123	39118					0.05472495672142941
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.31396484375	2	565.31422	1128.61389	-1.1254	-0.00063619	-0.29925	-0.00016917	-1.4246	-0.00080536	565.3144999161401	36.512	1.7642	36.55	36.199	37.963	0.038044					126	47	4	0	0	0	0.10407	7	2848	2826;2836;2848;2860;2872;2886;2898		134.77	33.165	1	26421000			34097	3431	23477	23525	39124;39125;39126;39127;39128;39129;39130	39126					0.05472495672142941
KPREGEETL	9	Unmodified	_KPREGEETL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.777099609375	2	529.77747	1057.54039	-0.73639	-0.00039013	0.36181	0.00019168	-0.37459	-0.00019845	529.7774758358436	22.954	0.69032	23.028	22.7	23.39	0.073954					47	15	4	0	0	0	0.28753	1	811	811		77.318	19.506	1	567960			34098	3500	23478	23526	39131	39131					0.013919472296720414
KPREGEETL	9	Unmodified	_KPREGEETL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.77747	1057.54039	-1.0173	-0.00053896	0.040811	2.1621E-05	-0.97653	-0.00051734	529.7772249521335	23.093	0.7205	23.093	22.803	23.523	0	0.097347	-0.00022334	NaN	77.318	52	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686110			34099	3500	23478	23526							0.013919472296720414
KPREGEETL	9	Unmodified	_KPREGEETL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.77747	1057.54039	-0.74833	-0.00039645	-0.26785	-0.0001419	-1.0162	-0.00053835	529.7770529905182	23.099	0.58796	23.038	22.798	23.386	-0.06086	0.041553	-0.00055039	NaN	77.318	48	13	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704020			34100	3500	23478	23526							0.013919472296720414
KPREGEETL	9	Unmodified	_KPREGEETL_					0	0	0		nc|ENSG00000115919|Q16719-2|KYNU;ENSG00000115919|ENST00000264170|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.77747	1057.54039	-0.8296	-0.0004395	1.2063	0.00063907	0.37671	0.00019957	529.7781695809581	23.011	0.36911	22.825	22.6	22.969	-0.18539	-0.17067	0.0010116	NaN	77.318	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63654			34101	3500	23478	23526							0.013919472296720414
KPRHPAHPM	9	Unmodified	_KPRHPAHPM_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7874755859375	2	535.787453	1069.56035	3.0296	0.0016232	-2.9958	-0.0016051	0.033843	1.8133E-05	535.7856113279653	17.328	0.4956	17.328	17.102	17.598	0					18	9	3	0	0	0	0.52323	1	156	156		57.811	13.694	1	129600			34102	18548	23479	23527	39132	39132					0.028354644792671024
KPRITIIP	8	Unmodified	_KPRITIIP_					0	0	0		nc|ENSG00000118407|Q7Z7B0-3|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;ENSG00000118407|ENST00000237172|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	nc|ENSG00000118407|Q7Z7B0-3|FILIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.76470947265625	2	469.313295	936.612037	0.53198	0.00024967	-0.50128	-0.00023526	0.030705	1.441E-05	469.3128951046709	72.414	0.52753	72.414	72.17	72.698	0					28	12	3	0	0	0	0.027866	1	8783	8783		29.15	0	1	322470			34103	3680	23480	23528	39133	39133					0.14119531444839595
KPRIVGGT	8	Unmodified	_KPRIVGGT_					0	0	0		nc|ENSG00000088926|P03951-2|F11;ENSG00000088926|ENST00000403665|F11	nc|ENSG00000088926|P03951-2|F11	nc|ENSG00000088926|P03951-2|F11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2145080566406	2	414.25852	826.502486	0.26292	0.00010892	-0.128	-5.3024E-05	0.13492	5.5892E-05	414.2582908849516	24.305	1.0016	24.384	23.912	24.914	0.078344					46	21	3	0	0	0	0.027866	1	1007	1007		27.882	0	1	126880			34104	1885	23481	23529	39134	39134					0.08229525825527162
KPRKADRQAR	10	Unmodified	_KPRKADRQAR_					0	0	0			REV__ENSG00000102738|ENST00000323563|MRPS31	REV__ENSG00000102738|ENST00000323563|MRPS31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.8852233886719	3	409.246055	1224.71634	1.8437	0.00075454	1.6396	0.00067102	3.4834	0.0014256	409.24666116649263	23.532	0.85609	23.341	23.248	24.104	-0.19117					32	19	2	0	0	0	0.03519	1	997	997		13.508	0.55046	1	61694	+		34105	21322	23482	23530	39135	39135					0.11296626254261355
KPRKADRQAR	10	Unmodified	_KPRKADRQAR_					0	0	0			REV__ENSG00000102738|ENST00000323563|MRPS31	REV__ENSG00000102738|ENST00000323563|MRPS31	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	409.246055	1224.71634	0.45095	0.00018455	3.1485	0.0012885	3.5994	0.0014731	409.2471904110476	23.651	0.77161	23.449	23.195	23.967	-0.20193	0.054042	0.0010145	NaN	17.833	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52393	+		34106	21322	23482	23530							0.11296626254261355
KPRKFLAF	8	Unmodified	_KPRKFLAF_					0	0	0			REV__ENST00000466177.6_1_2:64327629-64335477:-|nuORF	REV__ENST00000466177.6_1_2:64327629-64335477:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7635192871094	2	503.813462	1005.61237	-0.46805	-0.00023581	-2.4045	-0.0012114	-2.8726	-0.0014472	503.8143536812079	34.957	0.20427	34.745	34.642	34.847	-0.21246					6	4	2	0	0	0	0.027866	1	2619	2619		28.254	15.295	1	48400	+		34107	28291	23483	23531	39136	39136					0.10978951164690898
KPRKGKVF	8	Unmodified	_KPRKGKVF_					0	0	0		nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	nc|ENSG00000135047|P07711-3|CTSL	nc|ENSG00000135047|P07711-3|CTSL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.77117919921875	2	480.311087	958.60762	0.54463	0.00026159	-2.0497	-0.00098447	-1.505	-0.00072288	480.31000096941983	74.621	0.62593	74.362	74.158	74.784	-0.25887					25	14	2	0	0	0	0.027866	1	9137	9137		33.516	11.813	1	255870			34108	4850	23484	23532	39137	39137					0.12666067021950767
KPRKGKVF	8	Unmodified	_KPRKGKVF_					0	0	0		nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	nc|ENSG00000135047|P07711-3|CTSL	nc|ENSG00000135047|P07711-3|CTSL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.771240234375	2	480.311087	958.60762	-0.56263	-0.00027024	-0.7243	-0.00034789	-1.2869	-0.00061813	480.3106322092201	74.45	1.0297	74.46	74.18	75.21	0.0096512					35	24	2	0	0	0	0.027866	1	9071	9071		42.474	28.699	1	240430			34109	4850	23484	23532	39138	39138					0.12666067021950767
KPRLALQEP	9	Unmodified	_KPRLALQEP_					0	0	0			REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.7903442382812	2	526.316566	1050.61858	-0.23588	-0.00012415	0.040242	2.118E-05	-0.19564	-0.00010297	526.3164934542561	60.327	0.51828	60.129	59.911	60.429	-0.19742					24	12	3	0	0	0	0.024438	1	6717	6717		29.17	0	1	285750	+		34110	27607	23485	23533	39139	39139					0.09529424605557324
KPRLALQEP	9	Unmodified	_KPRLALQEP_					0	0	0			REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.316566	1050.61858	-0.54417	-0.00028641	-0.43687	-0.00022993	-0.98104	-0.00051634	526.3163931104856	60.237	0.47716	60.061	59.885	60.362	-0.1761	-0.054973	-0.00020659	NaN	42.864	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261760	+		34111	27607	23485	23533							0.09529424605557324
KPRLALQEP	9	Unmodified	_KPRLALQEP_					0	0	0			REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.316566	1050.61858	-0.414	-0.0002179	-0.40067	-0.00021088	-0.81467	-0.00042877	526.3162994538962	60.411	0.43259	60.157	59.904	60.336	-0.25374	0.041269	-0.00016849	NaN	42.864	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258200	+		34112	27607	23485	23533							0.09529424605557324
KPRLSFSTK	9	Unmodified	_KPRLSFSTK_					0	0	0		nc|ENSG00000082482|O95069-2|KCNK2;nc|ENSG00000082482|O95069-3|KCNK2;ENSG00000082482|ENST00000444842|KCNK2;nc|ENSG00000082482|O95069-4|KCNK2	nc|ENSG00000082482|O95069-2|KCNK2	nc|ENSG00000082482|O95069-2|KCNK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7902221679688	2	532.316566	1062.61858	-0.1426	-7.5908E-05	-0.082117	-4.3712E-05	-0.22472	-0.00011962	532.31621538479	24.143	0.40028	23.927	23.733	24.134	-0.21511					21	8	3	0	0	0	0.024539	1	1052	1052		20.947	0	1	130860			34113	1734	23486	23534	39140	39140					0.0897742460556401
KPRLTTKRPN	10	Unmodified	_KPRLTTKRPN_					0	0	0		ENST00000413663.1_1_3:43526466-43526670:-|nuORF	ENST00000413663.1_1_3:43526466-43526670:-|nuORF	ENST00000413663.1_1_3:43526466-43526670:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.8701782226562	2	605.872571	1209.73059	-0.60046	-0.0003638	-0.31946	-0.00019355	-0.91992	-0.00055735	605.8721410970385	98.62	1.0824	98.616	98.307	99.389	-0.0038834					72	24	4	0	0	0	1.1246	1	12583	12583		23.523	6.0547	1	1075200			34114	13847	23487	23535	39141	39141					0.13411278682542616
KPRNKSYGI	9	Unmodified	_KPRNKSYGI_					0	0	0		ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.80615234375	2	531.806365	1061.59818	-1.5902	-0.00084567	0.8158	0.00043385	-0.77437	-0.00041182	531.8067658237762	20.397	0.82154	20.397	20.127	20.949	0					54	16	4	0	0	0	0.14024	2	531	531;539		101.6	30.305	1	929490			34115	15947	23488	23536	39142;39143	39142					0.06984253945756791
KPRNKSYGI	9	Unmodified	_KPRNKSYGI_					0	0	0		ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8060302734375	2	531.806365	1061.59818	-0.81883	-0.00043546	0.080829	4.2985E-05	-0.738	-0.00039248	531.8063394361633	20.602	0.76789	20.497	20.227	20.995	-0.10477					47	15	4	0	0	0	0.10174	2	556	543;556		110.12	43.691	1	893380			34116	15947	23488	23536	39144;39145	39145					0.06984253945756791
KPRNKSYGI	9	Unmodified	_KPRNKSYGI_					0	0	0		ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8065185546875	2	531.806365	1061.59818	0.77708	0.00041325	-1.1167	-0.00059388	-0.33965	-0.00018063	531.8056769437933	20.485	1.8067	20.554	20.021	21.827	0.068901					52	17	4	0	0	0	0.027092	2	502	502;514		143.89	56.132	1	763580			34117	15947	23488	23536	39146;39147	39146					0.06984253945756791
KPRPDVTNEL	10	Unmodified	_KPRPDVTNEL_					0	0	0		ENST00000435616.5_1_2:174224078-174228757:+|nuORF;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	ENST00000435616.5_1_2:174224078-174228757:+|nuORF	ENST00000435616.5_1_2:174224078-174228757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.8198852539062	2	584.81967	1167.62479	-1.7004	-0.00099442	1.4619	0.00085495	-0.23849	-0.00013947	584.820464216635	34.674	1.163	34.674	34.292	35.455	0					98	30	5	0	0	0	0.1587	5	2594	2594;2604;2615;2627;2642		126.24	37.555	1	3938800			34118	5728	23489	23537	39148;39149;39150;39151;39152	39148					0.04767898046429764
KPRPDVTNEL	10	Unmodified	_KPRPDVTNEL_					0	0	0		ENST00000435616.5_1_2:174224078-174228757:+|nuORF;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	ENST00000435616.5_1_2:174224078-174228757:+|nuORF	ENST00000435616.5_1_2:174224078-174228757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.8198852539062	2	584.81967	1167.62479	-1.3977	-0.0008174	1.0639	0.00062219	-0.3338	-0.00019521	584.8202233253876	34.522	1.2933	34.517	34.071	35.364	-0.0045624					102	33	5	0	0	0	0.1587	5	2549	2549;2560;2572;2582;2597		126.24	35.642	1	3829200			34119	5728	23489	23537	39153;39154;39155;39156;39157	39153					0.04767898046429764
KPRPDVTNEL	10	Unmodified	_KPRPDVTNEL_					0	0	0		ENST00000435616.5_1_2:174224078-174228757:+|nuORF;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7	ENST00000435616.5_1_2:174224078-174228757:+|nuORF	ENST00000435616.5_1_2:174224078-174228757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.81982421875	2	584.81967	1167.62479	-0.2419	-0.00014147	0.086161	5.0389E-05	-0.15574	-9.108E-05	584.8196870628731	34.556	1.1741	34.606	34.213	35.388	0.050255					89	30	4	0	0	0	0.29525	5	2525	2516;2525;2537;2551;2564		109.44	35.464	1	3809600			34120	5728	23489	23537	39158;39159;39160;39161;39162	39159					0.04767898046429764
KPRPIIPML	9	Unmodified	_KPRPIIPML_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;KDM4B|p.E519K|1|0.26|ENSG00000127663|chr19:5131315-5131315|G/A|missense_variant	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7902221679688	2	532.83608	1063.65761	-0.76879	-0.00040964	0.52905	0.0002819	-0.23974	-0.00012774	532.8361522244377	56.222	0.7856	56.222	55.822	56.608	0					46	21	3	0	0	0	0.024354	1	6269	6269		47.916	0	1	585410			34121	4258	23490	23538	39163	39163					0.1283243363557176
KPRPIIPML	9	Oxidation (M)	_KPRPIIPM(Oxidation (M))L_		KPRPIIPM(1)L		KPRPIIPM(44)L	0	0	1		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;KDM4B|p.E519K|1|0.26|ENSG00000127663|chr19:5131315-5131315|G/A|missense_variant	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7640991210938	2	540.833537	1079.65252	-0.58915	-0.00031863	0.41656	0.00022529	-0.17258	-9.3338E-05	540.8336006137777	49.823	1.4623	49.823	49.212	50.675	0					83	41	3	0	0	0	0.024323	1	5171	5171		44.117	6.9577	1	1146300			34122	4258	23490	23539	39164	39164		166			0.11588129772940192
KPRPKSEGF	9	Unmodified	_KPRPKSEGF_					0	0	0		nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2913818359375	2	523.293091	1044.57163	0.74161	0.00038808	0.1652	8.645E-05	0.90682	0.00047453	523.2924918387235	19.048	1.1302	19.048	18.284	19.414	0					42	22	4	0	0	0	0.70156	1	367	367		45.972	5.1941	1	212380			34123	18266	23491	23540	39165	39165					0.05112565054423612
KPRPKSEGF	9	Unmodified	_KPRPKSEGF_					0	0	0		nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2918701171875	2	523.293091	1044.57163	2.783	0.0014563	-2.8388	-0.0014855	-0.055793	-2.9196E-05	523.2915268655483	19.243	0.54343	19.309	19.093	19.637	0.066195					32	10	4	0	0	0	0.72494	1	354	354		44.377	4.319	1	176480			34124	18266	23491	23540	39166	39166					0.05112565054423612
KPRPPPPPP	9	Unmodified	_KPRPPPPPP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000155657|ENST00000589042|TTN;ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7952575683594	2	491.795269	981.575986	-0.45249	-0.00022253	0.37295	0.00018342	-0.07953	-3.9113E-05	491.7953199787536	24.739	3.2875	24.739	23.822	27.109	0					175	77	4	0	0	0	0.10076	4	1110	1083;1097;1110;1130		110.34	41.853	1	1407400			34125	6479;10859	23492	23541	39167;39168;39169;39170	39169					0.08446074267988024
KPRPPPPPP	9	Unmodified	_KPRPPPPPP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000155657|ENST00000589042|TTN;ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7953796386719	2	491.795269	981.575986	-1.031	-0.00050703	0.96105	0.00047264	-0.069935	-3.4394E-05	491.7955952521363	24.824	3.4109	24.777	23.869	27.28	-0.047146					173	81	4	0	0	0	0.14199	5	1112	1079;1100;1112;1124;1139		101.21	40.918	1	1242000			34126	6479;10859	23492	23541	39171;39172;39173;39174;39175	39173					0.08446074267988024
KPRPPPPPP	9	Unmodified	_KPRPPPPPP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000155657|ENST00000589042|TTN;ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.79510498046875	2	491.795269	981.575986	0.066748	3.2826E-05	-0.18447	-9.0719E-05	-0.11772	-5.7893E-05	491.7950668683593	24.773	2.8187	24.852	24.138	26.957	0.078344					158	65	4	0	0	0	0.15889	6	1056	1032;1043;1056;1069;1080;1093		97.473	28.988	1	1246300			34127	6479;10859	23492	23541	39176;39177;39178;39179;39180;39181	39178					0.08446074267988024
KPRPPPSQL	9	Unmodified	_KPRPPPSQL_					0	0	0		nc|ENSG00000168061|A6NKF1-2|SAC3D1;ENST00000530213.5_1_11:64808530-64811777:+|nuORF;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.303466796875	2	510.303458	1018.59236	-0.38347	-0.00019569	0.8081	0.00041238	0.42463	0.00021669	510.3034017483901	26.616	1.1596	26.616	26.163	27.323	0					85	28	4	0	0	0	0.030064	2	1389	1389;1401		141.52	62.069	1	1161600			34128	7779	23493	23542	39182;39183	39182					0.08381155434085485
KPRPPPSQL	9	Unmodified	_KPRPPPSQL_					0	0	0		nc|ENSG00000168061|A6NKF1-2|SAC3D1;ENST00000530213.5_1_11:64808530-64811777:+|nuORF;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.3034973144531	2	510.303458	1018.59236	-0.52186	-0.00026631	0.29033	0.00014816	-0.23153	-0.00011815	510.3034876640766	26.671	1.0279	26.648	26.203	27.231	-0.023088					61	25	3	0	0	0	0.034407	2	1383	1372;1383		138.06	55.757	1	1296200			34129	7779	23493	23542	39184;39185	39185					0.08381155434085485
KPRPPPSQL	9	Unmodified	_KPRPPPSQL_					0	0	0		nc|ENSG00000168061|A6NKF1-2|SAC3D1;ENST00000530213.5_1_11:64808530-64811777:+|nuORF;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.3036193847656	2	510.303458	1018.59236	-0.68482	-0.00034947	0.40134	0.00020481	-0.28348	-0.00014466	510.3035359234907	26.484	1.0057	26.565	26.131	27.136	0.081293					61	24	3	0	0	0	0.030064	2	1316	1316;1328		141.52	56.36	1	1271400			34130	7779	23493	23542	39186;39187	39186					0.08381155434085485
KPRPSSLGHA	10	Unmodified	_KPRPSSLGHA_					0	0	0		ENST00000575214.1_1_16:3073840-3074149:-|nuORF	ENST00000575214.1_1_16:3073840-3074149:-|nuORF	ENST00000575214.1_1_16:3073840-3074149:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2766723632812	2	525.296165	1048.57778	-0.75156	-0.00039479	0.312	0.00016389	-0.43956	-0.0002309	525.295963564477	94.8	0.47551	94.8	94.444	94.919	0					15	10	2	0	0	0	0.03519	1	12045	12045		68.787	5.4806	1	37020			34131	17096	23494	23543	39188	39188					0.05543083285942885
KPRPTSIRKE	10	Unmodified	_KPRPTSIRKE_					0	0	0			REV__nc|ENSG815|Q902F8|ERVK-8_env	REV__nc|ENSG815|Q902F8|ERVK-8_env	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9227294921875	3	404.578811	1210.7146	0.53867	0.00021794	-1.5375	-0.00062202	-0.99878	-0.00040409	404.9123262647614	26.249	0.59977	26.081	25.662	26.262	-0.16816					19	17	2	0	0	0	0.03519	1	1302	1302		17.833	0	1	312100	+		34132	37248	23495	23544	39189	39189					0.11767572445683072
KPRQKALP	8	Unmodified	_KPRQKALP_					0	0	0		ENSG00000125864|ENST00000377873|BFSP1;nc|ENSG00000125864|Q12934-3|BFSP1;nc|ENSG00000125864|Q12934-2|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.76654052734375	2	469.300719	936.586885	1.3015	0.00061078	-1.2184	-0.00057181	0.083037	3.8969E-05	469.3000688702607	36.997	0.51035	36.997	36.685	37.195	0					24	12	3	0	0	0	0.027866	1	2949	2949		26.796	0	1	245350			34133	4155	23496	23545	39190	39190					0.11605476642262147
KPRRLLWER	9	Unmodified	_KPRRLLWER_					0	0	0		ENST00000328827.8_1_12:80084054-80084702:-|nuORF	ENST00000328827.8_1_12:80084054-80084702:-|nuORF	ENST00000328827.8_1_12:80084054-80084702:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	418.5906982421875	3	418.591163	1252.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.9	1	110.77	110.27	111.27	-0.12624								0	0	0	0.7445	1	13615	13615		7.8045	2.1057	1				34134	12306	23497	23546	39191	39191					0.13539288782089898
KPRSAAGL	8	Unmodified	_KPRSAAGL_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;KIAA1217|p.Q1203Pfs*11|1|0.39|ENSG00000120549|chr10:24542761-24542762|-/T|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;KIAA1217|p.K555Qfs*29|1|0.81|ENSG00000120549|chr10:24474040-24474041|-/C|frameshift_variant	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.2433166503906	2	400.24287	798.471186	0.32548	0.00013027	0.46356	0.00018554	0.78904	0.00031581	400.24293610405203	19.918	0.71842	19.813	19.509	20.227	-0.10477					28	14	3	0	0	0	0.44658	1	467	467		90.777	19.399	1	318750			34135	3824	23498	23547	39192	39192					0.06388952791428437
KPRSASRP	8	Unmodified	_KPRSASRP_					0	0	0		ENSG00000161682|ENST00000293443|FAM171A2	ENSG00000161682|ENST00000293443|FAM171A2	ENSG00000161682|ENST00000293443|FAM171A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7557373046875	2	449.764501	897.514448	-0.79857	-0.00035917	0.54814	0.00024653	-0.25044	-0.00011264	449.76457583605253	20.691	1.1183	20.691	19.929	21.048	0					36	22	2	0	0	0	0.027866	1	487	487		10.866	0	1	90070			34136	6890	23499	23548	39193	39193					0.061591425687083756
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.29296875	2	517.293091	1032.57163	-0.69821	-0.00036118	-0.028819	-1.4908E-05	-0.72703	-0.00037609	517.2930434943544	32.13	0.70465	32.13	31.789	32.494	0					54	17	4	0	0	0	0.041068	2	2201	2201;2215		132.76	57.562	1	7851200			34137	4654	23500	23549	39194;39195	39194					0.05664565054416926
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2926635742188	2	517.293091	1032.57163	-0.47649	-0.00024648	-0.24508	-0.00012678	-0.72157	-0.00037326	517.2929264877076	31.953	0.8681	31.965	31.545	32.413	0.011797					54	18	4	0	0	0	0.17845	4	2155	2155;2167;2180;2194		93.143	29.837	1	7690300			34138	4654	23500	23549	39196;39197;39198;39199	39196					0.05664565054416926
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.292724609375	2	517.293091	1032.57163	-0.83807	-0.00043353	0.87961	0.00045502	0.041542	2.1489E-05	517.2931035352328	31.756	1.1008	31.825	31.445	32.546	0.068962					76	26	5	0	0	0	0.10464	4	2104	2083;2092;2104;2117		109.48	40.692	1	7825500			34139	4654	23500	23549	39200;39201;39202;39203	39202					0.05664565054416926
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENST00000524899.1_1_11:67052494-67052918:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000173020|ENST00000308595|GRK2	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.8099365234375	2	512.811116	1023.60768	-1.4933	-0.00076577	0.28679	0.00014707	-1.2065	-0.0006187	512.8109733916239	38.115	0.99481	38.115	37.803	38.797	0					99	27	6	0	0	0	0.16638	1	3165	3165		95.815	19.041	1	8385100			34140	8334	23501	23550	39204	39204					0.09682022231288556
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENST00000524899.1_1_11:67052494-67052918:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000173020|ENST00000308595|GRK2	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8104248046875	2	512.811116	1023.60768	-1.0711	-0.00054927	-0.10522	-5.3957E-05	-1.1763	-0.00060322	512.810734928744	38.043	1.117	37.96	37.636	38.753	-0.082512					111	30	6	0	0	0	0.2101	1	3130	3130		87.696	30.975	1	7839900			34141	8334	23501	23550	39205	39205					0.09682022231288556
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENST00000524899.1_1_11:67052494-67052918:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000173020|ENST00000308595|GRK2	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.8099975585938	2	512.811116	1023.60768	-1.9741	-0.0010124	0.99249	0.00050896	-0.98164	-0.0005034	512.8113230860174	38.213	1.148	38.24	37.884	39.032	0.027275					109	31	6	0	0	0	0.14181	2	3114	3114;3125		101.25	40.281	1	7030100			34142	8334	23501	23550	39206;39207	39206					0.09682022231288556
KPRSQIKNEI	10	Unmodified	_KPRSQIKNEI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.90673828125	3	404.906816	1211.69862	1.0447	0.00042302	-1.3452	-0.00054468	-0.30047	-0.00012166	404.906264810894	22.603	1.1513	22.677	22.365	23.516	0.073954					66	25	4	0	0	0	1.0074	1	767	767		45.022	1.3714	1	1438400			34143	4245	23502	23551	39208	39208					0.10123866208732579
KPRVARKH	8	Unmodified	_KPRVARKH_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.30609130859375	2	496.317235	990.619916	0.18866	9.3636E-05	2.4834	0.0012326	2.6721	0.0013262	496.3183687516163	21.892	0.62077	21.714	21.445	22.065	-0.17798					25	12	3	0	0	0	0.027866	1	749	749		13.775	0	1	279910	+		34144	28289	23503	23552	39209	39209					0.12423103484979947
KPRWAKIS	8	Unmodified	_KPRWAKIS_					0	0	0			REV__ENSG00000137411|ENST00000676266|VARS2	REV__ENSG00000137411|ENST00000676266|VARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.28240966796875	2	493.300719	984.586885	0.46265	0.00022823	3.4663	0.0017099	3.929	0.0019382	493.3047044676144	39.998	0.25743	39.998	39.879	40.137	0					12	6	3	0	0	0	0.027866	1	3467	3467		10.866	0	1	46604	+		34145	23751	23504	23553	39210	39210					0.09397476642266156
KPSAAKLH	8	Unmodified	_KPSAAKLH_					0	0	0		ENST00000396161.9_2_19:58131980-58132310:+|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2386779785156	2	426.25852	850.502486	0.20194	8.6079E-05	0.2663	0.00011351	0.46824	0.00019959	426.2584833650724	58.216	0.38657	58.039	57.932	58.318	-0.17775					12	8	2	0	0	0	0.027866	1	6373	6373		13.775	0	1	445800			34146	13545	23505	23554	39211	39211					0.07125525825506429
KPSAPSISGVG	11	Unmodified	_KPSAPSISGVG_					0	0	0			REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.29241943359375	2	500.277106	998.53966	-0.056825	-2.8428E-05	-1.2606	-0.00063063	-1.3174	-0.00065906	500.2760575758776	47.348	0.49419	47.348	47.003	47.497	0					32	13	3	0	0	0	0.024756	1	4757	4757		29.17	0.020503	1	600350	+		34147	19191	23506	23555	39212	39212					0.040331525806209356
KPSDKCQFD	9	Unmodified	_KPSDKCQFD_					0	0	0			REV__ENSG00000107779|ENST00000372037|BMPR1A	REV__ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.246337890625	2	534.244949	1066.47534	-0.64236	-0.00034318	3.5397	0.0018911	2.8974	0.0015479	534.2467369123614	34.441	1.4941	34.437	34.152	35.646	-0.0045624					91	38	5	0	0	0	0.48817	1	2571	2571		60.118	4.6141	1	6365600	+		34148	21685	23507	23556	39213	39213					-0.05523370567834718
KPSDKCQFD	9	Unmodified	_KPSDKCQFD_					0	0	0			REV__ENSG00000107779|ENST00000372037|BMPR1A	REV__ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2467651367188	2	534.244949	1066.47534	-1.2863	-0.00068718	4.4455	0.002375	3.1593	0.0016878	534.2472394993654	34.41	1.4497	34.46	34.173	35.623	0.050255					94	37	5	0	0	0	0.48817	1	2530	2530		60.118	1.8883	1	6557600	+		34149	21685	23507	23556	39214	39214					-0.05523370567834718
KPSDQSGGAP	10	Unmodified	_KPSDQSGGAP_					0	0	0			REV__ENST00000519651.5_2_8:143352450-143353011:-|nuORF	REV__ENST00000519651.5_2_8:143352450-143353011:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7845458984375	2	472.227613	942.440674	-0.90346	-0.00042664	0.8302	0.00039204	-0.073261	-3.4596E-05	472.2280968865647	25.764	0.42507	25.592	25.365	25.79	-0.17151					11	9	2	0	0	0	0.03519	1	1237	1237		18.262	0	1	71843	+		34150	34264	23508	23557	39215	39215					-0.03284870384277383
KPSEEEQKEL	10	Unmodified	_KPSEEEQKEL_					0	0	0		ENST00000606893.5_1_6:110501354-110532119:+|nuORF;ENSG00000168438|ENST00000307731|CDC40	ENST00000606893.5_1_6:110501354-110532119:+|nuORF	ENST00000606893.5_1_6:110501354-110532119:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.7348937988281	3	406.206709	1215.5983	0.0051105	2.0759E-06	-1.1295	-0.0004588	-1.1244	-0.00045672	406.2062165628494	22.404	0.2863	22.202	21.999	22.285	-0.20199					9	5	2	0	0	0	0.03519	1	753	753		45.022	8.7046	1	34198			34151	7824	23509	23558	39216	39216					-0.0008783563555425644
KPSELTTHS	9	Unmodified	_KPSELTTHS_					0	0	0		ENST00000231368.9_1_5:96271240-96271516:+|nuORF;ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000231368.9_1_5:96271240-96271516:+|nuORF	ENST00000231368.9_1_5:96271240-96271516:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8214416503906	2	500.258914	998.503274	-0.16287	-8.1478E-05	-0.57912	-0.00028971	-0.74199	-0.00037119	500.25839177520527	39.079	0.8628	39.079	38.597	39.459	0					47	23	3	0	0	0	0.024405	1	3381	3381		35.618	3.6634	1	873990			34152	11238	23510	23559	39217	39217					0.003962756838859605
KPSGRLQE	8	Unmodified	_KPSGRLQE_					0	0	0			REV__nc|ENSG00000119715|O95718-1|ESRRB	REV__nc|ENSG00000119715|O95718-1|ESRRB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.25439453125	2	457.756341	913.498129	-0.30544	-0.00013982	-1.6436	-0.00075237	-1.949	-0.00089218	457.75606310955686	20.787	2.3559	20.682	19.932	22.287	-0.10477					122	48	5	0	0	0	0.95679	1	621	621		44.117	0	1	10305000	+		34153	36607	23511	23560	39218	39218					0.03792016611942017
KPSHWERA	8	Unmodified	_KPSHWERA_					0	0	0		ENST00000460095.1_1_2:201342446-201342566:+|nuORF	ENST00000460095.1_1_2:201342446-201342566:+|nuORF	ENST00000460095.1_1_2:201342446-201342566:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7566833496094	2	505.761958	1009.50936	-1.3609	-0.00068828	-0.025114	-1.2702E-05	-1.386	-0.00070098	505.76183906041877	38.709	0.41327	38.737	38.397	38.81	0.027275					20	10	3	0	0	0	0.027866	1	3164	3164		21.96	10.449	1	380950			34154	14648	23512	23561	39219	39219					0.004988387060848254
KPSIKTVTL	9	Unmodified	_KPSIKTVTL_					0	0	0		ENST00000473654.5_1_3:120461407-120461539:-|nuORF	ENST00000473654.5_1_3:120461407-120461539:-|nuORF	ENST00000473654.5_1_3:120461407-120461539:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7850646972656	2	493.815867	985.617182	-0.61802	-0.00030519	-1.5644	-0.00077254	-2.1824	-0.0010777	493.81500976824265	25.763	0.21346	25.729	25.639	25.853	-0.034395					6	4	2	0	0	0	0.023454	1	1232	1232		71.877	0	1	29298			34155	15013	23513	23562	39220	39220					0.12379790516808953
KPSIQYSKLP	10	Unmodified	_KPSIQYSKLP_					0	0	0			REV__ENST00000421587.6_2_X:41469209-41485910:-|nuORF	REV__ENST00000421587.6_2_X:41469209-41485910:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.2767333984375	2	580.837331	1159.66011	0.012642	7.3427E-06	-0.77697	-0.00045129	-0.76433	-0.00044395	580.8372257529395	86.55	0.39321	86.363	86.123	86.516	-0.18696					14	8	2	0	0	0	0.03519	1	10505	10505		28.081	0	1	85270	+		34156	32181	23514	23563	39221	39221					0.0866656057421551
KPSLEREK	8	Unmodified	_KPSLEREK_					0	0	0			REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.78509521484375	2	493.785099	985.555644	-0.46645	-0.00023033	-0.016721	-8.2564E-06	-0.48318	-0.00023858	493.7850926683667	25.55	1.914	25.55	24.786	26.7	0					99	45	4	0	0	0	0.47727	1	1229	1229		87.696	4.946	1	4943600	+		34157	33668	23515	23564	39222	39222					0.06228858817519267
KPSLEREK	8	Unmodified	_KPSLEREK_					0	0	0			REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7854309082031	2	493.785099	985.555644	-0.7538	-0.00037221	-1.54	-0.00076044	-2.2938	-0.0011327	493.7852536932994	25.542	1.696	25.507	24.904	26.6	-0.034397					114	40	5	0	0	0	0.56592	2	1197	1197;1244		79.451	7.5735	1	4753200	+		34158	33668	23515	23564	39223;39224	39223					0.06228858817519267
KPSLIPQEV	9	Unmodified	_KPSLIPQEV_					0	0	0		ENSG00000124788|ENST00000436367|ATXN1	ENSG00000124788|ENST00000436367|ATXN1	ENSG00000124788|ENST00000436367|ATXN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7923583984375	2	505.797675	1009.5808	-0.52884	-0.00026748	1.2732	0.000644	0.7444	0.00037651	505.7979550977783	76.307	0.88708	76.079	75.598	76.485	-0.22843					31	22	2	0	0	0	0.024456	1	9313	9313		35.152	6.0025	1	661030			34159	4078	23516	23565	39225	39225					0.0763891362009872
KPSLITKLS	9	Unmodified	_KPSLITKLS_					0	0	0			REV__ENST00000473577.1_1_13:30091265-30093642:-|nuORF	REV__ENST00000473577.1_1_13:30091265-30093642:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7849426269531	2	493.815867	985.617182	-0.41287	-0.00020388	0.39658	0.00019584	-0.016291	-8.0449E-06	493.81585836407305	25.724	0.25378	25.724	25.569	25.823	0					8	5	2	0	0	0	0.023635	1	1242	1242		66.429	32.257	1	34667	+		34160	23944	23517	23566	39226	39226					0.12379790516808953
KPSLLLSPL	9	Unmodified	_KPSLLLSPL_					0	0	0			REV__ENSG00000240771|ENST00000286494|ARHGEF25	REV__ENSG00000240771|ENST00000286494|ARHGEF25	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.3123779296875	2	484.312961	966.611368	-0.021439	-1.0383E-05	-0.05842	-2.8294E-05	-0.079859	-3.8677E-05	484.31268608515995	99.524	0.92699	99.534	99.046	99.973	0.010239					54	21	4	0	0	0	0.12602	1	12671	12671		104.75	5.3716	1	882620	+		34161	28963	23518	23567	39227	39227					0.12672692005139652
KPSLRGLSE	9	Unmodified	_KPSLRGLSE_					0	0	0			REV__nc|ENSG00000102362|Q96C24-2|SYTL4	REV__nc|ENSG00000102362|Q96C24-2|SYTL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7849426269531	2	493.785099	985.555644	-0.46645	-0.00023033	-0.016721	-8.2564E-06	-0.48318	-0.00023858	493.7850926683667	25.55	1.914	25.55	24.786	26.7	0					99	45	4	0	0	0	0.19099	1	1242	1242		90.37	2.6155	1	4943600	+		34162	21304	23519	23568	39228	39228					0.06228858817519267
KPSLRGLSE	9	Unmodified	_KPSLRGLSE_					0	0	0			REV__nc|ENSG00000102362|Q96C24-2|SYTL4	REV__nc|ENSG00000102362|Q96C24-2|SYTL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7850646972656	2	493.785099	985.555644	-0.7538	-0.00037221	-1.54	-0.00076044	-2.2938	-0.0011327	493.7852536932994	25.542	1.696	25.507	24.904	26.6	-0.034397					114	40	5	0	0	0	0.28753	1	1232	1232		77.318	3.0625	1	4753200	+		34163	21304	23519	23568	39229	39229					0.06228858817519267
KPSLWDKI	8	Unmodified	_KPSLWDKI_					0	0	0			REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.78582763671875	2	493.78711	985.559667	-0.46645	-0.00023033	-4.0901	-0.0020196	-4.5565	-0.00225	493.7850926683667	25.55	1.914	25.55	24.786	26.7	0					99	45	4	0	0	0	0.38989	2	1196	1196;1217		98.629	10.933	1	4943600	+		34164	26086	23520	23569	39230;39231	39230					0.06630948311226348
KPSNMNAFMEN	11	Unmodified	_KPSNMNAFMEN_					0	0	0		ENSG00000165028|ENST00000374762|NIPSNAP3B	ENSG00000165028|ENST00000374762|NIPSNAP3B	ENSG00000165028|ENST00000374762|NIPSNAP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.1902770996094	3	428.190007	1281.54819	-0.1661	-7.1122E-05	0.34081	0.00014593	0.17471	7.481E-05	428.19007168402067	25.267	0.89406	25.04	24.665	25.559	-0.22683					57	20	4	0	0	0	1.053	1	1170	1170		24.276	1.7143	1	1919500			34165	7357	23521	23570	39232	39232					-0.08131984836700212
KPSNSKSETTL	11	Unmodified	_KPSNSKSETTL_					0	0	0		ENSG00000138180|ENST00000371485|CEP55;nc|ENSG00000138180|Q53EZ4-2|CEP55	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	596.3145751953125	2	596.314417	1190.61428	-1.7539	-0.0010459	1.6784	0.0010008	-0.075544	-4.5048E-05	596.315311327134	20.003	0.82672	20.003	19.782	20.609	0					44	16	5	0	0	0	0.17212	2	483	483;492		102.06	41.943	1	442830			34166	5216	23522	23571	39233;39234	39233					0.026598706013373885
KPSNSKSETTL	11	Unmodified	_KPSNSKSETTL_					0	0	0		ENSG00000138180|ENST00000371485|CEP55;nc|ENSG00000138180|Q53EZ4-2|CEP55	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	596.314208984375	2	596.314417	1190.61428	-1.0906	-0.00065036	0.90761	0.00054122	-0.18303	-0.00010914	596.3148775196668	20.258	0.73222	20.153	19.884	20.616	-0.10477					35	14	4	0	0	0	0.15312	2	501	501;513		104.01	32.136	1	441050			34167	5216	23522	23571	39235;39236	39235					0.026598706013373885
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7947692871094	2	494.794935	987.575317	0.02924	1.4468E-05	-0.53815	-0.00026628	-0.50891	-0.00025181	494.79460290128986	36.479	1.3844	36.479	35.994	37.379	0					97	37	4	0	0	0	0.062622	1	2895	2895		124.08	47.306	1	3797600			34168	5989	23523	23572	39237	39237					0.08103234828286077
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7947692871094	2	494.794935	987.575317	-0.72127	-0.00035688	0.38957	0.00019276	-0.3317	-0.00016412	494.7949801338849	36.347	1.1486	36.305	35.963	37.112	-0.042458					87	30	4	0	0	0	0.077175	2	2855	2855;2867		118.74	39.03	1	3781600			34169	5989	23523	23572	39238;39239	39238					0.08103234828286077
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.794935	987.575317	-0.45576	-0.00022551	0.1052	5.2053E-05	-0.35056	-0.00017345	494.7948825529123	36.424	1.0664	36.462	36.166	37.232	0.038044	0.046653	4.6573E-05	NaN	124.08	80	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3534200			34170	5989	23523	23572							0.08103234828286077
KPSQSPVP	8	Unmodified	_KPSQSPVP_					0	0	0			REV__ENSG00000163596|ENST00000358299|ICA1L	REV__ENSG00000163596|ENST00000358299|ICA1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.53009033203125	2	420.23471	838.454868	2.0268	0.00085174	-2.9944	-0.0012583	-0.96758	-0.00040661	420.2334974056717	23.488	0.41214	23.297	22.988	23.4	-0.19117					14	9	2	0	0	0	0.027866	1	868	868		45.972	5.1941	1	124490	+		34171	25599	23524	23573	39240	39240					0.02917826834675452
KPSSLKREF	9	Unmodified	_KPSSLKREF_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.31396484375	2	546.314023	1090.61349	-1.6034	-0.00087597	1.5954	0.00087159	-0.0080168	-4.3797E-06	546.3146040278516	44.24	0.77699	44.24	43.948	44.725	0					47	22	3	0	0	0	0.20967	1	4211	4211		87.754	0.057861	1	3255300	+		34172	22497	23525	23574	39241	39241					0.07181120742961866
KPSSLKREF	9	Unmodified	_KPSSLKREF_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.3131713867188	2	546.314023	1090.61349	-1.0975	-0.00059955	1.1004	0.00060118	0.0029861	1.6313E-06	546.314342493069	44.301	0.67525	44.338	44.108	44.783	0.036903					44	19	3	0	0	0	0.16468	1	4160	4160		96.19	18.873	1	3646000	+		34173	22497	23525	23574	39242	39242					0.07181120742961866
KPSSLKREF	9	Unmodified	_KPSSLKREF_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	546.314023	1090.61349	-1.6034	-0.00087597	1.5954	0.00087159	-0.0080168	-4.3797E-06	546.3146040278516	44.24	0.77699	44.24	43.948	44.725	0	-0.047813	0.00014226	NaN	96.19	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3255300	+		34174	22497	23525	23574							0.07181120742961866
KPSSLKREF	9	Unmodified	_KPSSLKREF_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	546.314023	1090.61349	-1.822	-0.0009954	1.6861	0.00092113	-0.13595	-7.4269E-05	546.3146551241101	44.43	0.77335	44.285	43.994	44.767	-0.14471	-0.002614	0.00024133	NaN	96.19	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3731500	+		34175	22497	23525	23574							0.07181120742961866
KPSSLKREF	9	Unmodified	_KPSSLKREF_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	546.314023	1090.61349	-1.0975	-0.00059955	1.1004	0.00060118	0.0029861	1.6313E-06	546.314342493069	44.301	0.67525	44.338	44.108	44.783	0.036903	0.050427	-0.00039855	NaN	96.19	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3646000	+		34176	22497	23525	23574							0.07181120742961866
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.78533935546875	2	493.785099	985.555644	-0.46645	-0.00023033	-0.016721	-8.2564E-06	-0.48318	-0.00023858	493.7850926683667	25.55	1.914	25.55	24.786	26.7	0					99	45	4	0	0	0	0.2508	1	1206	1206		82.241	5.4664	1	4943600			34177	1110	23526	23575	39243	39243					0.062288588175078985
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.78515625	2	493.785099	985.555644	-0.7538	-0.00037221	-1.54	-0.00076044	-2.2938	-0.0011327	493.7852536932994	25.542	1.696	25.507	24.904	26.6	-0.034397					114	40	5	0	0	0	0.2508	1	1209	1209		82.241	5.4664	1	4753200			34178	1110	23526	23575	39244	39244					0.062288588175078985
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.78521728515625	2	493.785099	985.555644	0.17314	8.5494E-05	-0.62349	-0.00030787	-0.45035	-0.00022237	493.7848070360183	25.44	1.9408	25.52	24.687	26.628	0.08009					103	45	4	0	0	0	0.082191	5	1146	1135;1146;1158;1170;1183		116.9	34.663	1	5091800			34179	1110	23526	23575	39245;39246;39247;39248;39249	39246					0.062288588175078985
KPSTIIGRD	9	Unmodified	_KPSTIIGRD_					0	0	0			REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7857360839844	2	493.785099	985.555644	-0.7538	-0.00037221	-1.54	-0.00076044	-2.2938	-0.0011327	493.7852536932994	25.542	1.696	25.507	24.904	26.6	-0.034397					114	40	5	0	0	0	0.23085	1	1187	1187		84.916	2.675	1	4753200	+		34180	19632	23527	23576	39250	39250					0.06228858817530636
KPSVQWDM	8	Oxidation (M)	_KPSVQWDM(Oxidation (M))_		KPSVQWDM(1)		KPSVQWDM(46)	0	0	1			REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7408447265625	2	503.73676	1005.45897	-0.57018	-0.00028722	4.1411	0.002086	3.5709	0.0017988	503.7389155086102	24.453	1.0069	24.453	24.166	25.173	0					56	22	4	0	0	0	0.94517	1	1087	1087		45.952	6.6991	1	2953000	+		34181	32830	23528	23577	39251	39251		900			-0.04354451733922815
KPTFRSYLLP	10	Unmodified	_KPTFRSYLLP_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;nc|ENSG00000166912|Q9NXD2-3|MTMR10	ENSG00000166912|ENST00000435680|MTMR10	ENSG00000166912|ENST00000435680|MTMR10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.5387878417969	3	407.904524	1220.69174	-0.16354	-6.671E-05	1.9874	0.00081067	1.8239	0.00074396	408.240768017643	30.698	0.58957	30.548	30.219	30.809	-0.14952					23	13	2	0	0	0	0.03519	1	1969	1969		30.569	4.5055	1	181380			34182	7626	23529	23578	39252	39252					0.09022553328168215
KPTHKPIA	8	Unmodified	_KPTHKPIA_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.2323913574219	2	446.27417	890.533787	-1.4176	-0.00063265	-2.3688	-0.0010571	-3.7864	-0.0016898	446.27408177995306	37.904	0.16641	37.904	37.769	37.936	0					6	4	2	0	0	0	0.027866	1	3116	3116		17.365	5.8539	1	57783			34183	6328	23530	23579	39253	39253					0.08414098859589103
KPTIAPKPQL	10	Unmodified	_KPTIAPKPQL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8406982421875	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	1.0508	2	12764	12706;12764		39.253	3.6345	1	11254000	+		34184	32235	23531	23580	39254;39255	39255					0.12811168299458586
KPTIAPKPQL	10	Unmodified	_KPTIAPKPQL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8405151367188	2	546.842416	1091.67028	-0.54263	-0.00029673	-3.6256	-0.0019826	-4.1682	-0.0022794	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	1.0122	2	12706	12706;12744		44.377	0.65241	1	11370000	+		34185	32235	23531	23580	39256;39257	39256					0.12811168299458586
KPTIAPKPQL	10	Unmodified	_KPTIAPKPQL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8402709960938	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	0.94316	4	12640	12640;12663;12687;12712		51.193	11.94	1	10488000	+		34186	32235	23531	23580	39258;39259;39260;39261	39258					0.12811168299458586
KPTIAPKPQL	10	Unmodified	_KPTIAPKPQL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.8399658203125	2	546.842416	1091.67028	-0.3389	-0.00018533	-3.9718	-0.002172	-4.3107	-0.0023573	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	0.88896	5	12362	12343;12362;12379;12389;12400		54.776	13.874	1	9530200	+		34187	32235	23531	23580	39262;39263;39264;39265;39266	39263					0.12811168299458586
KPTLYPLW	8	Unmodified	_KPTLYPLW_					0	0	0			REV__ENST00000570395.1_1_16:53844054-53848662:+|nuORF	REV__ENST00000570395.1_1_16:53844054-53848662:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7749328613281	2	509.292028	1016.5695	-0.87314	-0.00044468	-3.6394	-0.0018535	-4.5125	-0.0022982	509.2909572082885	44.413	0.32728	44.309	44.099	44.426	-0.10468					12	8	2	0	0	0	0.027866	1	4145	4145		16.473	6.2079	1	90076	+		34188	24039	23532	23581	39267	39267					0.061881363165980474
KPTNIDTID	9	Unmodified	_KPTNIDTID_					0	0	0			REV__ENST00000491597.5_1_3:154801953-154802933:+|nuORF	REV__ENST00000491597.5_1_3:154801953-154802933:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7687683105469	2	508.766571	1015.51859	-0.41181	-0.00020952	0.40463	0.00020586	-0.0071828	-3.6543E-06	508.76690434109787	22.747	1.5882	22.672	22.082	23.67	-0.075296					98	35	4	0	0	0	0.37611	1	847	847		67.494	7.3754	1	6121000	+		34189	28195	23533	23582	39268	39268					0.011451424810957178
KPTPEKTQSR	10	Unmodified	_KPTPEKTQSR_					0	0	0			REV__nc|ENSG00000130816|P26358|DNMT1	REV__nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.8421630859375	2	586.325119	1170.63569	-0.050489	-2.9603E-05	-2.1117	-0.0012382	-2.1622	-0.0012678	586.8248294839518	53.174	0.50013	53.047	52.753	53.253	-0.12705					28	12	3	0	0	0	0.03519	1	5556	5556		30.318	12.056	1	253330	+		34190	23159	23534	23583	39269	39269					0.057193004207192644
KPTRAVNKIH	10	Unmodified	_KPTRAVNKIH_					0	0	0		ENSG00000105559|ENST00000263265|PLEKHA4;nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	ENSG00000105559|ENST00000263265|PLEKHA4	ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.3533935546875	2	582.354014	1162.69348	-0.28496	-0.00016595	-0.80509	-0.00046885	-1.0901	-0.0006348	582.3534070628981	102.44	0.86188	102.26	101.97	102.84	-0.17178					81	20	6	0	0	0	1.1088	1	12732	12732		31.53	3.6476	1	8672600			34191	2692	23535	23584	39270	39270					0.1186360713677459
KPTSLGGDI	9	Unmodified	_KPTSLGGDI_					0	0	0			REV__ENST00000590622.5_1_19:36811080-36811248:-|nuORF	REV__ENST00000590622.5_1_19:36811080-36811248:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	444.2457275390625	2	444.245275	886.475997	-0.38856	-0.00017261	0.092758	4.1207E-05	-0.2958	-0.00013141	444.24570454476	102.79	1.6394	102.79	102.21	103.85	0					89	39	5	0	0	0	0.82115	1	13166	13166		37.812	6.2817	1	7543800	+		34192	35705	23536	23585	39271	39271					0.028217921435384596
KPTSLGGDI	9	Unmodified	_KPTSLGGDI_					0	0	0			REV__ENST00000590622.5_1_19:36811080-36811248:-|nuORF	REV__ENST00000590622.5_1_19:36811080-36811248:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.244873046875	2	444.245275	886.475997	0.49711	0.00022084	-0.2112	-9.3827E-05	0.2859	0.00012701	444.2453203047101	103.02	1.0446	102.85	102.55	103.59	-0.17034					50	25	5	0	0	0	0.82115	1	12773	12773		37.812	2.6595	1	10788000	+		34193	35705	23536	23585	39272	39272					0.028217921435384596
KPTSRTQV	8	Unmodified	_KPTSRTQV_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7641296386719	2	458.764166	915.513779	-0.074589	-3.4219E-05	0.59511	0.00027302	0.52052	0.0002388	458.76427484780197	19.683	0.66832	19.564	19.348	20.016	-0.11872					26	13	3	0	0	0	0.74904	1	428	428		63.306	3.188	1	260380			34194	2571	23537	23586	39273	39273					0.05264303129001746
KPTVNLVASS	10	Unmodified	_KPTVNLVASS_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3;REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.7436828613281	2	508.292756	1014.57096	-0.94437	-0.00048002	-0.073615	-3.7418E-05	-1.018	-0.00051744	508.292895830085	29.884	0.38335	29.712	29.575	29.959	-0.17258					9	8	2	0	0	0	0.03519	1	1890	1890		25.574	0	1	49091	+		34195	21513;34294	23538	23587	39274	39274					0.06425725614712974
KPTWTDKRQLI	11	Unmodified	_KPTWTDKRQLI_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7972106933594	3	462.601504	1384.78268	-0.47745	-0.00022087	-4.0489	-0.001873	-4.5264	-0.0020939	462.59954279250724	32.438	0.19514	32.438	32.262	32.457	0					7	4	2	0	0	0	0.02477	1	2239	2239		22.562	8.4756	1	48865	+		34196	37192	23539	23588	39275	39275					0.10568397305655708
KPVDVASDN	9	Unmodified	_KPVDVASDN_					0	0	0		ENSG00000095209|ENST00000374692|TMEM38B	ENSG00000095209|ENST00000374692|TMEM38B	ENSG00000095209|ENST00000374692|TMEM38B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7845458984375	2	472.737814	943.461075	-0.40236	-0.00019021	1.7577	0.00083092	1.3553	0.00064071	472.7384408610542	25.586	0.5901	25.414	25.118	25.708	-0.17151					28	13	3	0	0	0	0.024397	1	1237	1237		24.519	0	1	424780			34197	2018	23540	23589	39276	39276					-0.01291699724481532
KPVFCVFTQ	9	Unmodified	_KPVFCVFTQ_					0	0	0			REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF	REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7913818359375	2	534.78097	1067.54739	1.5836	0.00084688	-3.7367	-0.0019983	-2.1531	-0.0011514	534.778727738738	19.741	0.52813	19.807	19.637	20.165	0.066195					13	10	2	0	0	0	0.024427	1	426	426		26.693	0	1	23972	+		34198	34544	23541	23590	39277	39277					0.01631588576537979
KPVGEKELAM	10	Unmodified	_KPVGEKELAM_					0	0	0			REV__ME3|p.F587Hfs*12|1|0.26|ENSG00000151376|chr11:86441333-86441336|AAAG/-|frameshift_variant	REV__ME3|p.F587Hfs*12|1|0.26|ENSG00000151376|chr11:86441333-86441336|AAAG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.2999877929688	2	551.302267	1100.58998	-0.42898	-0.0002365	-4.1137	-0.0022679	-4.5427	-0.0025044	551.299965520362	26.455	2.1006	26.455	25.009	27.109	0					138	50	5	0	0	0	0.64538	2	1356	1344;1356		71.877	13.096	1	3830900	+		34199	24767	23542	23591	39278;39279	39279					0.04370938914121325
KPVGEKELAM	10	Unmodified	_KPVGEKELAM_					0	0	0			REV__ME3|p.F587Hfs*12|1|0.26|ENSG00000151376|chr11:86441333-86441336|AAAG/-|frameshift_variant	REV__ME3|p.F587Hfs*12|1|0.26|ENSG00000151376|chr11:86441333-86441336|AAAG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.2996826171875	2	551.302267	1100.58998	-0.46688	-0.00025739	-4.2443	-0.0023399	-4.7112	-0.0025973	551.2998848003388	26.271	1.9365	26.352	25.094	27.031	0.081293					130	46	5	0	0	0	0.77808	2	1260	1260;1271		62.107	8.756	1	3998600	+		34200	24767	23542	23591	39280;39281	39280					0.04370938914121325
KPVIQKKP	8	Unmodified	_KPVIQKKP_					0	0	0			REV__ENST00000519513.5_1_8:22488073-22526624:-|nuORF	REV__ENST00000519513.5_1_8:22488073-22526624:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.2845153808594	2	469.313295	936.612037	0.047418	2.2254E-05	0.04371	2.0514E-05	0.091128	4.2767E-05	469.3131578828989	50.634	1.2608	50.634	50.307	51.568	0					84	35	3	0	0	0	0.027866	1	5379	5379		47.916	22.465	1	3273500	+		34201	24555	23543	23592	39282	39282					0.14119531444839595
KPVIQKKP	8	Unmodified	_KPVIQKKP_					0	0	0			REV__ENST00000519513.5_1_8:22488073-22526624:-|nuORF	REV__ENST00000519513.5_1_8:22488073-22526624:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2843933105469	2	469.313295	936.612037	0.28026	0.00013153	-0.19133	-8.9795E-05	0.088925	4.1734E-05	469.3130308259685	50.578	1.1617	50.659	50.243	51.405	0.08099					90	32	4	0	0	0	0.027866	1	5300	5300		23.042	0	1	3489500	+		34202	24555	23543	23592	39283	39283					0.14119531444839595
KPVKAGLQLF	10	Unmodified	_KPVKAGLQLF_					0	0	0			REV__ENSG00000197912|ENST00000645818|SPG7	REV__ENSG00000197912|ENST00000645818|SPG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7980346679688	2	550.844959	1099.67537	-0.59173	-0.00032595	2.1908	0.0012068	1.5991	0.00088085	551.3477877735824	55.991	0.43629	55.835	55.666	56.102	-0.15601					24	11	3	0	0	0	0.03519	1	6166	6166		25.574	3.6142	1	117810	+		34203	28363	23544	23593	39284	39284					0.1295147216208079
KPVKEKDID	9	Unmodified	_KPVKEKDID_					0	0	0		ENST00000493787.5_1_10:75056784-75072389:-|nuORF;nc|ENSG00000156042|Q5T0N1-2|CFAP70;nc|ENSG00000156042|Q5T0N1|CFAP70;ENSG00000156042|ENST00000355577|CFAP70	ENST00000493787.5_1_10:75056784-75072389:-|nuORF	ENST00000493787.5_1_10:75056784-75072389:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3009033203125	2	536.305864	1070.59717	-0.71646	-0.00038424	0.32874	0.00017631	-0.38772	-0.00020794	536.3057224416841	57.072	0.40317	56.908	56.571	56.974	-0.16431					19	11	2	0	0	0	0.024466	1	6309	6309		31.53	16.665	1	217390			34204	6509	23545	23594	39285	39285					0.06469994786198185
KPVKKNVL	8	Unmodified	_KPVKKNVL_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.3132629394531	2	463.313295	924.612037	0.48165	0.00022316	-0.34725	-0.00016089	0.1344	6.2271E-05	463.31299358668355	19.17	0.64294	19.009	18.787	19.43	-0.16079					32	12	4	0	0	0	0.37125	1	391	391		101.21	29.916	1	686650			34205	1474	23546	23595	39286	39286					0.14671531444844277
KPVKKNVL	8	Unmodified	_KPVKKNVL_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.31317138671875	2	463.313295	924.612037	0.64931	0.00030083	-0.48733	-0.00022578	0.16198	7.505E-05	463.3128968949162	19.231	0.98985	19.031	18.811	19.801	-0.2001					40	19	4	0	0	0	0.93274	1	401	401		47.916	0	1	572740			34206	1474	23546	23595	39287	39287					0.14671531444844277
KPVKKNVL	8	Unmodified	_KPVKKNVL_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.31329345703125	2	463.313295	924.612037	1.8608	0.00086213	-1.8448	-0.00085474	0.015947	7.3885E-06	463.3123032134384	19.19	1.0383	18.956	18.731	19.769	-0.23345					43	20	4	0	0	0	0.56067	2	364	364;390		79.939	0	1	586950			34207	1474	23546	23595	39288;39289	39288					0.14671531444844277
KPVKKNVL	8	Unmodified	_KPVKKNVL_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.313295	924.612037	0.07213	3.3419E-05	-0.1381	-6.3982E-05	-0.065967	-3.0563E-05	463.31296238123196	19.047	0.34531	18.928	18.707	19.052	-0.11872	-0.063364	0.0014871	NaN	101.21	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33153			34208	1474	23546	23595							0.14671531444844277
KPVKKNVL	8	Unmodified	_KPVKKNVL_					0	0	0		ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ENSG00000072210|ENST00000176643|ALDH3A2	ENSG00000072210|ENST00000176643|ALDH3A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	463.313295	924.612037	3.8278	0.0017735	-4.0184	-0.0018618	-0.19061	-8.8314E-05	463.31142538869125	18.97	0.3941	19.033	18.845	19.239	0.063307	0.041271	-0.0021085	NaN	101.21	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28339			34209	1474	23546	23595							0.14671531444844277
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7904052734375	2	513.790184	1025.56581	-0.62358	-0.00032039	0.4406	0.00022638	-0.18298	-9.4012E-05	513.7903861419665	20.011	0.91777	20.011	19.644	20.562	0					55	18	5	0	0	0	0.021872	4	497	475;485;497;512		148.04	68.592	1	1036100			34210	3636	23547	23596	39290;39291;39292;39293	39292					0.05405466542742943
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7901611328125	2	513.790184	1025.56581	-0.44622	-0.00022927	0.45414	0.00023333	0.007917	4.0677E-06	513.7904138257223	20.313	1.194	20.208	19.654	20.848	-0.10477					51	24	3	0	0	0	0.013293	3	505	496;505;517		176.09	99.313	1	1106000			34211	3636	23547	23596	39294;39295;39296	39295					0.05405466542742943
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.790283203125	2	513.790184	1025.56581	1.1274	0.00057925	-1.0238	-0.000526	0.10365	5.3253E-05	513.7895749325924	20.158	1.3211	20.226	19.832	21.153	0.068901					63	26	4	0	0	0	0.03849	4	466	446;455;466;478		134.81	60.556	1	989450			34212	3636	23547	23596	39297;39298;39299;39300	39299					0.05405466542742943
KPVLEDVK	8	Unmodified	_KPVLEDVK_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF;ENST00000472398.5_1_21:38529111-38558109:+|nuORF;nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENSG00000182670|ENST00000418766|TTC3	ENST00000399586.2_1_X:74960734-74966719:-|nuORF;nc|ENSG00000182670|P53804-3|TTC3	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7947082519531	2	464.279118	926.543683	-0.24561	-0.00011403	-0.70487	-0.00032726	-0.95048	-0.00044129	464.27945386990666	34.032	0.34394	33.825	33.587	33.931	-0.20695					11	8	2	0	0	0	0.027866	1	2458	2458		16.473	0	1	46318			34213	13650;9153	23548	23597	39301	39301					0.07747242074333371
KPVLGKTVFV	10	Unmodified	_KPVLGKTVFV_					0	0	0			REV__ENST00000475908.5_1_5:56205193-56212726:+|nuORF	REV__ENST00000475908.5_1_5:56205193-56212726:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.27490234375	2	544.347335	1086.68012	-0.6776	-0.00036885	0.55987	0.00030476	-0.11773	-6.4088E-05	544.3472633816223	77.98	1.2804	77.98	77.712	78.993	0					45	30	2	0	0	0	0.03519	1	9614	9614		35.618	18.15	1	200890	+		34214	25011	23549	23598	39302	39302					0.14024356304844332
KPVLSLSPP	9	Unmodified	_KPVLSLSPP_					0	0	0			REV__ENST00000546155.5_1_19:41116125-41119449:+|nuORF	REV__ENST00000546155.5_1_19:41116125-41119449:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2843933105469	2	469.289485	936.564418	-0.25862	-0.00012137	0.14305	6.7132E-05	-0.11557	-5.4233E-05	469.28940370110274	51.231	1.8337	51.318	50.483	52.316	0.087006					83	50	2	0	0	0	0.023655	1	5300	5300		35.152	9.578	1	161860	+		34215	34835	23550	23599	39303	39303					0.09359832453992567
KPVLVLLPVL	10	Unmodified	_KPVLVLLPVL_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8344116210938	2	545.883553	1089.75255	-0.73821	-0.00040298	-2.0216	-0.0011035	-2.7598	-0.0015065	545.8822366202487	49.018	0.14411	48.738	48.647	48.791	-0.27977					5	3	2	0	0	0	0.03519	1	4876	4876		6.7355	0	1	61138			34216	18558	23551	23600	39304	39304					0.2112669037840078
KPVLVNQK	8	Unmodified	_KPVLVNQK_					0	0	0			REV__ENSG00000163632|ENST00000295896|C3orf49	REV__ENSG00000163632|ENST00000295896|C3orf49	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.28448486328125	2	463.295102	924.575651	-0.16634	-7.7065E-05	-0.15423	-7.1454E-05	-0.32057	-0.00014852	463.2946009820958	24.823	0.30729	24.649	24.425	24.733	-0.17484					8	6	2	0	0	0	0.027866	1	1090	1090		57.811	27.308	1	15146	+		34217	25605	23552	23601	39305	39305					0.11034654548132039
KPVLVNQK	8	Unmodified	_KPVLVNQK_					0	0	0			REV__ENSG00000163632|ENST00000295896|C3orf49	REV__ENSG00000163632|ENST00000295896|C3orf49	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.295102	924.575651	-0.63597	-0.00029464	2.1161	0.00098037	1.4801	0.00068572	463.29527364586346	24.808	0.13261	24.808	24.697	24.83	0	0.079729	0.0015897	NaN	29.15	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21767	+		34218	25605	23552	23601							0.11034654548132039
KPVLVTTSV	9	Unmodified	_KPVLVTTSV_					0	0	0		ENSG00000101115|ENST00000217086|SALL4	ENSG00000101115|ENST00000217086|SALL4	ENSG00000101115|ENST00000217086|SALL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.810791015625	2	472.294768	942.574983	0.5628	0.00026581	-2.1303	-0.0010061	-1.5675	-0.00074034	472.2935823557672	21.598	0.33237	21.421	21.162	21.494	-0.17721					9	6	2	0	0	0	0.024541	1	698	698		7.1934	0	1	9862			34219	2282	23553	23602	39306	39306					0.1013981510842541
KPVLYRTR	8	Unmodified	_KPVLYRTR_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.818603515625	2	516.819276	1031.624	0.064573	3.3372E-05	-0.38844	-0.00020075	-0.32387	-0.00016738	516.8188164349012	21.634	0.7306	21.444	20.931	21.662	-0.19072					21	9	3	0	0	0	0.91956	1	689	689		49.442	8.8689	1	380170			34220	6777	23554	23603	39307	39307					0.10945148188034182
KPVPKPRTV	9	Unmodified	_KPVPKPRTV_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.32733154296875	2	511.329476	1020.6444	-0.5065	-0.00025899	-4.1239	-0.0021087	-4.6304	-0.0023676	511.32724468367337	96.12	1.2357	96.12	95.778	97.014	0					68	28	4	0	0	0	0.85329	1	12275	12275		35.618	5.1146	1	1589000			34221	3805	23555	23604	39308	39308					0.13490318847857452
KPVQEEGDP	9	Unmodified	_KPVQEEGDP_					0	0	0		ENSG00000178602|ENST00000319460|OTOS	ENSG00000178602|ENST00000319460|OTOS	ENSG00000178602|ENST00000319460|OTOS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7720947265625	2	499.743096	997.47164	0.0095581	4.7766E-06	0.035258	1.762E-05	0.044816	2.2396E-05	499.7429918970012	31.941	0.42721	31.756	31.48	31.907	-0.18503					13	9	2	0	0	0	0.024523	1	2131	2131		10.265	2.575	1	64662			34222	8824	23556	23605	39309	39309					-0.027197170700446804
KPVQEEGDP	9	Unmodified	_KPVQEEGDP_					0	0	0		ENSG00000178602|ENST00000319460|OTOS	ENSG00000178602|ENST00000319460|OTOS	ENSG00000178602|ENST00000319460|OTOS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.743096	997.47164	0.044371	2.2174E-05	-0.03746	-1.872E-05	0.0069109	3.4537E-06	499.7428799299615	31.949	0.50867	31.712	31.489	31.998	-0.23666	-0.022231	-4.0414E-05	NaN	10.265	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104110			34223	8824	23556	23605							-0.027197170700446804
KPVRRGVA	8	Unmodified	_KPVRRGVA_					0	0	0		SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|27|1|anti-sense	SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|27|1|anti-sense	SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|27|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7679748535156	2	441.785236	881.555919	0.14499	6.4055E-05	-3.6288	-0.0016031	-3.4838	-0.0015391	441.78317635892427	102.79	0.38544	102.79	102.54	102.93	0.0054169					12	9	2	0	0	0	0.027866	1	13154	13154		13.775	0	1	248900			34224	38014	23557	23606	39310	39310					0.11040323328040813
KPVSMNSET	9	Unmodified	_KPVSMNSET_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.78118896484375	2	496.739499	991.464446	-0.30165	-0.00014984	-0.40749	-0.00020242	-0.70914	-0.00035226	496.7391465017198	27.989	0.69312	28.07	27.759	28.452	0.081165					26	16	2	0	0	0	0.024374	1	1535	1535		32.812	8.6097	1	62950	+		34225	23860	23558	23607	39311	39311					-0.03162772942118863
KPVTIINQP	9	Unmodified	_KPVTIINQP_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2660217285156	2	505.305667	1008.59678	0.92865	0.00046925	-0.66396	-0.0003355	0.2647	0.00013375	505.3053964119559	62.998	0.50079	63.052	62.801	63.302	0.054104					31	12	4	0	0	0	0.024541	1	7237	7237		17.468	0	1	308270			34226	7065	23559	23608	39312	39312					0.09282619856981
KPVTRRPV	8	Unmodified	_KPVTRRPV_					0	0	0			REV__nc|ENSG00000173575|O14647-2|CHD2	REV__nc|ENSG00000173575|O14647-2|CHD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7723693847656	2	476.806168	951.597784	-0.68244	-0.00032539	0.6782	0.00032337	-0.0042334	-2.0185E-06	476.80641224070155	35.6	0.56486	35.579	35.386	35.951	-0.021767					26	14	3	0	0	0	0.027866	1	2762	2762		26.796	7.4361	1	367450	+		34227	26786	23560	23609	39313	39313					0.12004879016558334
KPVVKNIK	8	Unmodified	_KPVVKNIK_					0	0	0		ENSG00000169607|ENST00000302450|CKAP2L;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.K293N|1|0.3|ENSG00000169607|chr2:112756492-112756492|C/G|missense_variant	ENSG00000169607|ENST00000302450|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.3133850097656	2	463.313295	924.612037	0.48165	0.00022316	-0.34725	-0.00016089	0.1344	6.2271E-05	463.31299358668355	19.17	0.64294	19.009	18.787	19.43	-0.16079					32	12	4	0	0	0	0.56067	1	402	402		79.939	19.645	1	686650			34228	7956	23561	23610	39314	39314					0.14671531444855646
KPVVKNIK	8	Unmodified	_KPVVKNIK_					0	0	0		ENSG00000169607|ENST00000302450|CKAP2L;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.K293N|1|0.3|ENSG00000169607|chr2:112756492-112756492|C/G|missense_variant	ENSG00000169607|ENST00000302450|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.3133850097656	2	463.313295	924.612037	0.64931	0.00030083	-0.48733	-0.00022578	0.16198	7.505E-05	463.3128968949162	19.231	0.98985	19.031	18.811	19.801	-0.2001					40	19	4	0	0	0	0.71833	1	389	389		65.803	4.8312	1	572740			34229	7956	23561	23610	39315	39315					0.14671531444855646
KPVVKNIK	8	Unmodified	_KPVVKNIK_					0	0	0		ENSG00000169607|ENST00000302450|CKAP2L;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;CKAP2L|p.K293N|1|0.3|ENSG00000169607|chr2:112756492-112756492|C/G|missense_variant	ENSG00000169607|ENST00000302450|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.313232421875	2	463.313295	924.612037	1.8608	0.00086213	-1.8448	-0.00085474	0.015947	7.3885E-06	463.3123032134384	19.19	1.0383	18.956	18.731	19.769	-0.23345					43	20	4	0	0	0	0.78609	1	376	376		60.294	2.4827	1	586950			34230	7956	23561	23610	39316	39316					0.14671531444855646
KPVWEEEL	8	Unmodified	_KPVWEEEL_					0	0	0		ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.263671875	2	515.266207	1028.51786	-0.85564	-0.00044088	-3.7139	-0.0019136	-4.5695	-0.0023545	515.2642304533275	29.184	0.6241	29.263	28.865	29.489	0.078344					49	15	4	0	0	0	0.39824	1	1726	1726		97.473	1.6575	1	4013100			34231	7464	23562	23611	39317	39317					0.004743478320506256
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7843322753906	2	501.784567	1001.55458	-0.030837	-1.5474E-05	-0.42262	-0.00021206	-0.45345	-0.00022754	501.7842175855521	42.77	1.016	42.77	42.424	43.44	0					71	27	4	0	0	0	0.12602	2	3947	3947;3957		104.75	33.451	1	5580600			34232	4734	23563	23612	39318;39319	39318					0.053866444486288856
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7848815917969	2	501.784567	1001.55458	-0.11611	-5.8262E-05	-0.34303	-0.00017213	-0.45914	-0.00023039	501.7842736353945	42.966	1.0882	42.827	42.521	43.609	-0.13929					67	29	4	0	0	0	0.12602	2	3970	3958;3970		104.75	25.296	1	5802600			34233	4734	23563	23612	39320;39321	39321					0.053866444486288856
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.78515625	2	501.784567	1001.55458	0.3504	0.00017582	-0.86207	-0.00043257	-0.51167	-0.00025675	501.7840405183751	42.878	1.0221	42.904	42.566	43.588	0.026012					58	27	4	0	0	0	0.2101	2	3923	3913;3923		87.696	13.454	1	5480400			34234	4734	23563	23612	39322;39323	39323					0.053866444486288856
KPWSAAPR	8	Unmodified	_KPWSAAPR_					0	0	0			REV__ENST00000415244.1_1_3:196729825-196730720:+|nuORF	REV__ENST00000415244.1_1_3:196729825-196730720:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7530212402344	2	456.756144	911.497735	-0.62705	-0.00028641	-3.5263	-0.0016107	-4.1534	-0.0018971	456.7544793654189	22.588	0.7888	22.662	22.365	23.154	0.073954					45	16	4	0	0	0	0.91956	1	769	769		49.442	7.0454	1	832010	+		34235	32048	23564	23613	39324	39324					0.038446416827468965
KPYECTMY	8	Carbamidomethyl (C)	_KPYEC(Carbamidomethyl (C))TMY_	KPYEC(1)TMY		KPYEC(68)TMY		0	1	0		ZNF630|p.K323M|1|0.79|ENSG00000221994|chrX:48059474-48059474|T/A|missense_variant	ZNF630|p.K323M|1|0.79|ENSG00000221994|chrX:48059474-48059474|T/A|missense_variant	ZNF630|p.K323M|1|0.79|ENSG00000221994|chrX:48059474-48059474|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.31396484375	2	546.230453	1090.44635	-1.1053	-0.00060374	-3.5107	-0.0019176	-4.616	-0.0025214	546.228452162399	45.049	1.398	45.049	44.215	45.613	0					73	40	2	0	0	0	0.027866	1	4211	4211		68.485	19.043	1	342370			34236	38203	23565	23614	39325	39325	495				-0.0952523118849058
KPYECTMY	8	Carbamidomethyl (C)	_KPYEC(Carbamidomethyl (C))TMY_	KPYEC(1)TMY		KPYEC(71)TMY		0	1	0		ZNF630|p.K323M|1|0.79|ENSG00000221994|chrX:48059474-48059474|T/A|missense_variant	ZNF630|p.K323M|1|0.79|ENSG00000221994|chrX:48059474-48059474|T/A|missense_variant	ZNF630|p.K323M|1|0.79|ENSG00000221994|chrX:48059474-48059474|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.3134765625	2	546.230453	1090.44635	-1.3583	-0.00074194	-2.9567	-0.001615	-4.315	-0.002357	546.2287082782975	45.108	1.3247	44.959	44.222	45.547	-0.1488					68	38	2	0	0	0	0.027866	1	4223	4223		71.378	21.936	1	400010			34237	38203	23565	23614	39326	39326	495				-0.0952523118849058
KPYEDQNY	8	Unmodified	_KPYEDQNY_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2844848632812	2	528.735271	1055.45599	-0.51026	-0.00026979	-2.7613	-0.00146	-3.2715	-0.0017298	529.234835401344	35.482	1.0298	35.266	34.712	35.741	-0.21555					53	26	3	0	0	0	0.027866	1	2756	2756		35.618	0	1	547590			34238	6075	23566	23615	39327	39327					-0.06952003587093714
KPYEDQNY	8	Unmodified	_KPYEDQNY_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.28955078125	2	528.735271	1055.45599	-0.74657	-0.00039474	-2.4836	-0.0013132	-3.2302	-0.0017079	529.2349104220053	35.44	0.93317	35.228	34.685	35.618	-0.21246					53	23	3	0	0	0	0.027866	1	2719	2719		34.173	3.8548	1	544930			34239	6075	23566	23615	39328	39328					-0.06952003587093714
KPYGACGNSKP	11	Unmodified	_KPYGACGNSKP_					0	0	0			REV__DUOX2|p.G1352S|1|0.23|ENSG00000140279|chr15:45095854-45095854|C/T|missense_variant	REV__DUOX2|p.G1352S|1|0.23|ENSG00000140279|chr15:45095854-45095854|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3108520507812	2	561.274041	1120.53353	-1.1639	-0.00065325	0.95366	0.00053527	-0.21022	-0.00011799	561.2743711318874	51.208	0.68066	51.295	50.964	51.644	0.087006					45	18	3	0	0	0	0.024786	1	5380	5380		55.084	27.002	1	1120100	+		34240	19717	23567	23616	39329	39329					-0.021916889225394698
KPYKPKKIIK	10	Unmodified	_KPYKPKKIIK_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.8985290527344	3	414.948064	1241.82236	0.32062	0.00013304	-0.94308	-0.00039133	-0.62247	-0.00025829	414.94783906908054	25.114	0.25371	25.195	24.961	25.215	0.08009					7	5	2	0	0	0	0.03519	1	1090	1090		28.081	1.0342	1	12590			34241	774	23568	23617	39330	39330					0.2111256904702259
KPYLALKGSV	10	Unmodified	_KPYLALKGSV_					0	0	0		ENSG00000183395|ENST00000329406|PMCH	ENSG00000183395|ENST00000329406|PMCH	ENSG00000183395|ENST00000329406|PMCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.800537109375	2	538.329142	1074.64373	0.18374	9.8912E-05	-3.4833	-0.0018752	-3.2996	-0.0017763	538.3274057941413	101.12	0.9513	100.99	100.68	101.63	-0.13156					46	21	3	0	0	0	0.03519	1	12542	12542		24.519	12.312	1	133690			34242	9224	23569	23618	39331	39331					0.1093947940810267
KPYLKSKN	8	Unmodified	_KPYLKSKN_					0	0	0		ENSG00000169607|ENST00000302450|CKAP2L;ENST00000481732.5_1_2:113514720-113522175:-|nuORF	ENSG00000169607|ENST00000302450|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2923278808594	2	489.292559	976.570566	-0.297	-0.00014532	-0.53111	-0.00025987	-0.8281	-0.00040519	489.29214313734826	37.277	0.9573	37.31	37.035	37.992	0.032269					55	25	3	0	0	0	0.94517	1	2983	2983		45.952	3.5558	1	3361600			34243	7956	23570	23619	39332	39332					0.08134350685509162
KPYNIISHLK	10	Unmodified	_KPYNIISHLK_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.90655517578125	3	404.908157	1211.70264	0.77879	0.00031534	-4.3561	-0.0017638	-3.5774	-0.0014485	404.90639899175994	22.71	0.97486	22.71	22.385	23.36	0					63	21	4	0	0	0	0.70466	1	812	812		66.962	5.2706	1	1523400	+		34244	25729	23571	23620	39333	39333					0.10525955702473766
KPYQKVGL	8	Unmodified	_KPYQKVGL_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.78173828125	2	466.781828	931.549102	-0.57219	-0.00026709	0.12941	6.0408E-05	-0.44278	-0.00020668	466.78186118894024	29.64	1.0634	29.395	29.099	30.162	-0.24524					71	24	5	0	0	0	0.26074	5	1823	1814;1823;1835;1847;1868		128.82	22.395	1	5298900			34245	7035;37905	23572	23621	39334;39335;39336;39337;39338	39335					0.08058965656812234
KPYQKVGL	8	Unmodified	_KPYQKVGL_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.781494140625	2	466.781828	931.549102	-0.57128	-0.00026666	0.11395	5.3191E-05	-0.45733	-0.00021347	466.78183335450836	29.555	1.1042	29.382	29.025	30.13	-0.17258					67	25	4	0	0	0	0.30538	3	1810	1810;1821;1842		110.34	21.694	1	5121500			34246	7035;37905	23572	23621	39339;39340;39341	39339					0.08058965656812234
KPYQKVGL	8	Unmodified	_KPYQKVGL_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.78173828125	2	466.781828	931.549102	-0.33663	-0.00015713	-0.1284	-5.9934E-05	-0.46502	-0.00021706	466.7817203153351	29.585	1.0928	29.435	29.087	30.18	-0.14952					69	25	4	0	0	0	0.26074	3	1822	1788;1798;1822		128.82	36.625	1	5271800			34247	7035;37905	23572	23621	39342;39343;39344	39344					0.08058965656812234
KPYSAKVVEI	10	Unmodified	_KPYSAKVVEI_					0	0	0			REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF	REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3297729492188	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0344	1	11333	11333		41.427	3.6151	1	4298500			34248	34653	23573	23622	39345	39345					0.0881915819995811
KQAAPSVFTC	10	Unmodified	_KQAAPSVFTC_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3214721679688	2	526.265684	1050.51682	-0.12613	-6.6375E-05	-3.5612	-0.0018741	-3.6873	-0.0019405	526.2635550367597	19.973	1.2678	19.805	19.127	20.395	-0.16774					43	25	3	0	0	0	0.03519	1	452	452		32.812	0	1	71349	+		34249	23950	23574	23623	39346	39346					-0.00642189808513649
KQALKEKL	8	Unmodified	_KQALKEKL_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.3080139160156	2	479.30821	956.601866	-0.39727	-0.00019041	0.58791	0.00028179	0.19064	9.1375E-05	479.3082137958977	20.816	0.9414	20.593	20.117	21.058	-0.22344					42	18	4	0	0	0	0.44658	1	574	574		90.777	0	1	450550	+		34250	22745	23575	23624	39347	39347					0.12182923719592509
KQAQIPLAA	9	Unmodified	_KQAQIPLAA_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.28448486328125	2	470.284734	938.554916	-0.42956	-0.00020202	0.68333	0.00032136	0.25376	0.00011934	470.2848891706306	43.41	0.65647	43.41	43.038	43.695	0					50	17	4	0	0	0	0.074956	2	4064	4064;4078		119.56	49.365	1	3814400			34251	6161;15814	23576	23625	39348;39349	39348					0.08318064168463479
KQAQIPLAA	9	Unmodified	_KQAQIPLAA_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2850341796875	2	470.284734	938.554916	-0.33489	-0.00015749	0.62042	0.00029177	0.28553	0.00013428	470.28488014948084	43.525	0.72412	43.384	43.025	43.749	-0.14081					54	19	4	0	0	0	0.11848	2	4071	4060;4071		106.42	35.12	1	3715100			34252	6161;15814	23576	23625	39350;39351	39351					0.08318064168463479
KQAQIPLAA	9	Unmodified	_KQAQIPLAA_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.284912109375	2	470.284734	938.554916	0.75716	0.00035608	-0.59825	-0.00028135	0.15891	7.4732E-05	470.28431935557404	43.429	0.65858	43.46	43.153	43.812	0.030823					51	17	4	0	0	0	0.26797	2	4015	4003;4015		79.939	30.895	1	3418100			34253	6161;15814	23576	23625	39352;39353	39353					0.08318064168463479
KQCCFLTVV	9	Unmodified	_KQCCFLTVV_					0	0	0			REV__ENSG00000180772|ENST00000371906|AGTR2	REV__ENSG00000180772|ENST00000371906|AGTR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7667846679688	2	520.767006	1039.51946	-0.78335	-0.00040794	-0.77407	-0.00040311	-1.5574	-0.00081105	520.7665767227601	47.481	3.8194	47.481	46.659	50.479	0					218	109	5	0	0	0	0.16468	1	4809	4809		96.19	22.216	1	74814000	+		34254	27361	23577	23626	39354	39354					0.001279423247979139
KQCKDLLVL	9	Unmodified	_KQCKDLLVL_					0	0	0		ENSG00000152689|ENST00000403687|RASGRP3;nc|ENSG00000152689|Q8IV61-2|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2669677734375	2	530.315177	1058.6158	0.31795	0.00016861	2.6591	0.0014102	2.9771	0.0015788	530.3163409173405	20.578	0.54259	20.382	20.187	20.73	-0.19577					24	10	3	0	0	0	0.024495	1	556	556		42.396	6.7778	1	149600			34255	6295	23578	23627	39355	39355					0.08883833156392029
KQCPVGSGAH	10	Unmodified	_KQCPVGSGAH_					0	0	0		ENST00000460627.5_1_3:184104458-184107207:+|nuORF;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	ENST00000460627.5_1_3:184104458-184107207:+|nuORF	ENST00000460627.5_1_3:184104458-184107207:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.81329345703125	2	492.240001	982.465449	-0.84858	-0.00041771	-4.1283	-0.0020321	-4.9768	-0.0024498	492.2377426776504	30.401	0.67421	30.157	29.82	30.494	-0.24415					20	15	2	0	0	0	0.03519	1	1892	1892		49.442	8.8689	1	168640			34256	1935	23579	23628	39356	39356					-0.02648513782548889
KQDETQTKI	9	Unmodified	_KQDETQTKI_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.790283203125	2	545.790578	1089.5666	-1.5326	-0.00083648	1.122	0.00061235	-0.41066	-0.00022413	545.791153973944	20.973	0.78547	20.973	20.656	21.441	0					49	15	5	0	0	0	0.015077	3	600	590;600;613		190.62	36.742	1	1228500			34257	1090	23580	23629	39357;39358;39359	39358					0.0254021640114388
KQDETQTKI	9	Unmodified	_KQDETQTKI_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	545.790578	1089.5666	-1.0585	-0.0005777	0.89779	0.00049001	-0.16068	-8.7696E-05	545.7909166856776	21.125	0.58737	21.035	20.766	21.354	-0.090092	0.030687	-0.00016785	NaN	190.62	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306200			34258	1090	23580	23629							0.0254021640114388
KQDKADLIR	9	Unmodified	_KQDKADLIR_					0	0	0		nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32575832-32580264:-|nuORF	nc|ENSG00000120616|Q9H2F5-3|EPC1	nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7301635742188	2	543.81693	1085.61931	0.13908	7.5632E-05	3.1682	0.0017229	3.3073	0.0017986	543.8184089061962	51.73	0.63158	51.546	51.258	51.889	-0.18404					34	16	3	0	0	0	0.024427	1	5347	5347		34.173	1.3601	1	523000			34259	3825	23581	23630	39360	39360					0.07992219254606425
KQDSAERRSG	10	Unmodified	_KQDSAERRSG_					0	0	0			REV__ENSG00000182013|ENST00000313683|PNMA8A	REV__ENSG00000182013|ENST00000313683|PNMA8A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.2886962890625	2	567.286525	1132.5585	0.57195	0.00032446	2.2038	0.0012502	2.7757	0.0015746	567.2875278688099	108.39	0.34079	108.39	108.18	108.52	0					35	16	3	0	0	0	1.0236	1	13880	13880		42.864	3.6114	1	3754100	+		34260	27444	23582	23631	39361	39361					-0.002479177956274725
KQEEEQVRAE	10	Unmodified	_KQEEEQVRAE_					0	0	0			REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.7220153808594	3	415.873841	1244.59969	0.23714	9.862E-05	-1.2515	-0.00052047	-1.0144	-0.00042185	416.208063138366	42.5	0.16988	42.368	42.285	42.455	-0.13219					6	4	2	0	0	0	0.03519	1	3889	3889		23.378	8.6842	1	147420	+		34261	26253	23583	23632	39362	39362					-0.01282201546791839
KQELEVTL	8	Unmodified	_KQELEVTL_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.273681640625	2	480.274032	958.533512	-0.22894	-0.00010995	0.094948	4.5601E-05	-0.13399	-6.4354E-05	480.274096512382	75.961	1.3364	75.702	75.398	76.734	-0.25865					88	32	4	0	0	0	0.26064	1	9009	9009		128.86	8.2401	1	3558300	+		34262	19290	23584	23633	39363	39363					0.05258634349092972
KQELGMAMR	9	Unmodified	_KQELGMAMR_					0	0	0		nc|ENSG00000183166|Q9BXU9-1|CALN1;ENSG00000183166|ENST00000395275|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.297119140625	2	532.272986	1062.53142	-0.94875	-0.00050499	-4.0046	-0.0021315	-4.9533	-0.0026365	532.2707743875482	43.24	0.55643	43.014	42.753	43.31	-0.22597					19	14	2	0	0	0	0.024397	1	3936	3936		31.53	12.426	1	167010			34263	9204	23585	23634	39364	39364					0.0026555906797511852
KQEMLRKE	8	Unmodified	_KQEMLRKE_					0	0	0			REV__nc|ENSG00000186575|P35240-5|NF2	REV__nc|ENSG00000186575|P35240-5|NF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2925415039062	2	531.292233	1060.56991	-0.79244	-0.00042102	0.56806	0.00030181	-0.22438	-0.00011921	531.2923680423469	31.232	2.9557	31.047	30.076	33.031	-0.18503					187	71	4	0	0	0	0.77775	1	2005	2005		60.972	0	1	4279400	+		34264	27868	23586	23635	39365	39365					0.0420518797418481
KQEPTEVSE	9	Unmodified	_KQEPTEVSE_					0	0	0			REV__nc|ENSG00000133475|P36268-2|GGT2P	REV__nc|ENSG00000133475|P36268-2|GGT2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.279052734375	2	523.753661	1045.49277	-0.97749	-0.00051196	2.9152	0.0015269	1.9377	0.0010149	523.7549584165909	39.057	0.35794	39.081	38.919	39.277	0.023727					13	9	2	0	0	0	0.024523	1	3251	3251		21.96	17.644	1	133330	+		34265	36672	23587	23636	39366	39366					-0.028157517611589356
KQERLVTV	8	Unmodified	_KQERLVTV_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.795166015625	2	486.795466	971.57638	0.45211	0.00022008	-0.66412	-0.00032329	-0.21202	-0.00010321	486.79500285340094	18.819	0.69191	18.615	18.361	19.053	-0.20371					37	13	4	0	0	0	1.0338	1	352	352		31.955	0	1	471590			34266	1552	23588	23637	39367	39367					0.08945449197199196
KQERYDEHWIY	11	Unmodified	_KQERYDEHWIY_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2799072265625	3	522.91604	1565.72629	-1.1778	-0.00061588	4.4109	0.0023065	3.2331	0.0016906	522.91799386985	38.742	0.45051	38.742	38.555	39.006	0					18	11	2	0	0	0	0.02486	1	3260	3260		12.957	3.3113	1	647520	+		34267	22530	23589	23638	39368	39368					-0.03394275321670648
KQERYDEHWIY	11	Unmodified	_KQERYDEHWIY_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2791748046875	3	522.91604	1565.72629	-0.62203	-0.00032527	4.2551	0.0022251	3.6331	0.0018998	522.9177221952772	38.76	0.44354	38.661	38.437	38.88	-0.098755					28	11	4	0	0	0	0.024876	1	3260	3260		13.508	10.099	1	640290	+		34268	22530	23589	23638	39369	39369					-0.03394275321670648
KQERYDEHWIY	11	Unmodified	_KQERYDEHWIY_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2803955078125	3	522.91604	1565.72629	-1.1339	-0.00059293	4.0948	0.0021412	2.9609	0.0015483	522.9178144182017	38.98	0.36371	39.003	38.807	39.17	0.023727					29	9	4	0	0	0	0.024876	1	3226	3226		5.6988	0	1	660170	+		34269	22530	23589	23638	39370	39370					-0.03394275321670648
KQEVLPLTLEL	11	Unmodified	_KQEVLPLTLEL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	642.3825073242188	2	641.884478	1281.7544	0.34308	0.00022022	-3.5873	-0.0023026	-3.2442	-0.0020824	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.0017	1	11730	11730		36.447	6.129	1	1209200			34270	1544;18081	23590	23639	39371	39371					0.12479654605704127
KQFEGTVEI	9	Unmodified	_KQFEGTVEI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7763671875	2	525.776939	1049.53933	-0.26993	-0.00014192	-0.65345	-0.00034357	-0.92338	-0.00048549	525.7764725745118	49.396	1.1377	49.396	49.072	50.21	0					72	31	5	0	0	0	0.014034	4	5101	5090;5101;5115;5128		166.68	46.058	1	8352800			34271	5346	23591	23640	39372;39373;39374;39375	39373					0.01653732860791024
KQFEGTVEI	9	Unmodified	_KQFEGTVEI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.7769165039062	2	525.776939	1049.53933	-0.28777	-0.0001513	-0.13021	-6.8462E-05	-0.41798	-0.00021977	525.7766064627996	49.649	0.9174	49.497	49.148	50.065	-0.1512					70	24	4	0	0	0	0.013293	4	5119	5098;5107;5119;5132		195.81	71.22	1	8921500			34272	5346	23591	23640	39376;39377;39378;39379	39378					0.01653732860791024
KQFEGTVEI	9	Unmodified	_KQFEGTVEI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7772216796875	2	525.776939	1049.53933	-1.3332	-0.00070097	0.72645	0.00038195	-0.60676	-0.00031902	525.7772105951606	49.299	0.91962	49.373	49.096	50.016	0.074196					65	24	5	0	0	0	0.015901	4	5026	5004;5014;5026;5038		157.33	42.675	1	8810200			34273	5346	23591	23640	39380;39381;39382;39383	39382					0.01653732860791024
KQFFEEVGI	9	Unmodified	_KQFFEEVGI_					0	0	0		nc|ENSG00000131470|Q9P2W1-3|PSMC3IP;nc|ENSG00000131470|Q9P2W1-2|PSMC3IP;ENSG00000131470|ENST00000393795|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	MSMS	OPSCC_39_ClassI_Rep-1	1	548.7870483398438	2	548.787307	1095.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.118	1	66.118	65.618	66.618	0								0	0	0	0.1574	1	7863	7863		79.713	35.335	1				34274	4529	23592	23641	39384	39384					0.01610323240447542
KQFFEEVGI	9	Unmodified	_KQFFEEVGI_					0	0	0		nc|ENSG00000131470|Q9P2W1-3|PSMC3IP;nc|ENSG00000131470|Q9P2W1-2|PSMC3IP;ENSG00000131470|ENST00000393795|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.7872924804688	2	548.787307	1095.56006	-0.71393	-0.0003918	-1.4039	-0.00077042	-2.1178	-0.0011622	548.7861543097482	66.462	0.71146	66.18	65.634	66.345	-0.28149					32	19	3	0	0	0	0.32811	1	7879	7879		71.877	22.341	1	2097100			34275	4529	23592	23641	39385	39385					0.01610323240447542
KQFFEEVGI	9	Unmodified	_KQFFEEVGI_					0	0	0		nc|ENSG00000131470|Q9P2W1-3|PSMC3IP;nc|ENSG00000131470|Q9P2W1-2|PSMC3IP;ENSG00000131470|ENST00000393795|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	nc|ENSG00000131470|Q9P2W1-3|PSMC3IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.7863159179688	2	548.787307	1095.56006	-0.73011	-0.00040068	-1.6495	-0.0009052	-2.3796	-0.0013059	548.7859556963432	66.206	0.72636	66.236	65.661	66.388	0.030098					34	20	3	0	0	0	0.32811	1	7789	7789		71.877	18.941	1	2052800			34276	4529	23592	23641	39386	39386					0.01610323240447542
KQFGNILIL	9	Unmodified	_KQFGNILIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3233032226562	2	523.32386	1044.63317	-0.16436	-8.6012E-05	-0.40606	-0.0002125	-0.57042	-0.00029851	523.3236606525719	71.83	1.3883	71.83	71.185	72.573	0					117	35	5	0	0	0	0.074956	2	8715	8715;8726		119.56	39.618	1	15698000			34277	2388	23593	23642	39387;39388	39387					0.11263496753713298
KQFGNILIL	9	Unmodified	_KQFGNILIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3235473632812	2	523.32386	1044.63317	0.35475	0.00018565	-0.89058	-0.00046606	-0.53583	-0.00028041	523.3234051835421	72.145	1.7182	71.864	71.281	72.999	-0.28133					127	43	5	0	0	0	0.17455	5	8725	8725;8737;8750;8763;8775		94.006	27.577	1	15725000			34278	2388	23593	23642	39389;39390;39391;39392;39393	39389					0.11263496753713298
KQFGNILIL	9	Unmodified	_KQFGNILIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3241577148438	2	523.32386	1044.63317	0.39218	0.00020524	-1.0253	-0.00053655	-0.63309	-0.00033131	523.3233407921191	71.887	1.2929	71.897	71.318	72.611	0.0097733					110	33	5	0	0	0	0.15889	3	8649	8649;8661;8686		97.473	20.626	1	15419000			34279	2388	23593	23642	39394;39395;39396	39394					0.11263496753713298
KQGAFITLV	9	Unmodified	_KQGAFITLV_					0	0	0		ENST00000585456.1_1_18:61026935-61034351:-|nuORF;ENST00000589530.5_1_18:61022616-61034411:-|nuORF;KDSR|p.M202Ifs*7|1|0.2|ENSG00000119537|chr18:63350891-63350892|-/A|frameshift_variant;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000585456.1_1_18:61026935-61034351:-|nuORF	ENST00000585456.1_1_18:61026935-61034351:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7943115234375	2	488.794935	975.575317	-0.80055	-0.00039131	0.22333	0.00010916	-0.57722	-0.00028214	488.79470711903986	62.709	0.69938	62.709	62.531	63.23	0					31	17	3	0	0	0	0.50848	1	7315	7315		58.782	0	1	4898600			34280	3745	23594	23643	39397	39397					0.0865523482827939
KQGDPIMTV	9	Unmodified	_KQGDPIMTV_					0	0	0		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.76025390625	2	494.760235	987.505917	0.27069	0.00013392	-0.84278	-0.00041698	-0.5721	-0.00028305	494.7596910375247	46.086	0.62882	46.086	45.818	46.447	0					45	17	3	0	0	0	0.091713	1	4535	4535		113.41	36.094	1	3106600			34281	7861	23595	23644	39398	39398					0.011664078172202608
KQGDPIMTV	9	Unmodified	_KQGDPIMTV_					0	0	0		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7599182128906	2	494.760235	987.505917	-0.97217	-0.00048099	0.62334	0.0003084	-0.34883	-0.00017259	494.760331428926	46.19	0.62174	46.039	45.756	46.378	-0.15156					53	17	4	0	0	0	0.2101	1	4535	4535		87.696	7.9839	1	2838300			34282	7861	23595	23644	39399	39399					0.011664078172202608
KQGDPIMTV	9	Unmodified	_KQGDPIMTV_					0	0	0		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.760235	987.505917	-0.14182	-7.0167E-05	-0.34338	-0.00016989	-0.4852	-0.00024006	494.75996144450653	46.028	0.60915	46.08	45.899	46.509	0.051395	-0.13243	9.141E-05	NaN	113.41	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3330700			34283	7861	23595	23644							0.011664078172202608
KQGDPIMTV	9	Unmodified	_KQGDPIMTV_					0	0	0		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.760235	987.505917	-0.015952	-7.8923E-06	-4.7696	-0.0023598	-4.7855	-0.0023677	494.757765167475	46.735	0.36101	46.466	46.267	46.628	-0.26939	0.25374	-0.0042884	NaN	113.41	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184580			34284	7861	23595	23644							0.011664078172202608
KQGDPIMTV	9	Unmodified	_KQGDPIMTV_					0	0	0		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.760235	987.505917	-0.59623	-0.00029499	-4.901	-0.0024248	-5.4973	-0.0027198	494.7580467435446	46.585	0.41672	46.391	46.128	46.545	-0.19387	0.17875	-0.0044185	NaN	113.41	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241120			34285	7861	23595	23644							0.011664078172202608
KQGDPIMTV	9	Oxidation (M)	_KQGDPIM(Oxidation (M))TV_		KQGDPIM(1)TV		KQGDPIM(140)TV	0	0	1		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7581481933594	2	502.757692	1003.50083	0.081102	4.0775E-05	-2.3712	-0.0011922	-2.2901	-0.0011514	502.75604077945206	37.013	1.0971	36.95	36.628	37.725	-0.063385					62	29	4	0	0	0	0.033448	1	2981	2981		138.83	59.113	1	2396700			34286	7861	23595	23645	39400	39400		323			-0.0007789604539993888
KQGDPIMTV	9	Oxidation (M)	_KQGDPIM(Oxidation (M))TV_					0	0	1		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	502.757692	1003.50083	1.2495	0.0006282	-2.025	-0.0010181	-0.77545	-0.00038986	502.7564312011924	37.141	0.64504	37.141	36.805	37.45	0	0.07955	-0.00059319	NaN	138.83	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2442200			34287	7861	23595	23645				323			-0.0007789604539993888
KQGEVIVSI	9	Unmodified	_KQGEVIVSI_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7898864746094	2	486.78985	971.565146	-1.4062	-0.00068454	0.96123	0.00046792	-0.445	-0.00021662	486.79019026439306	51.715	0.90561	51.802	51.411	52.316	0.087006					56	24	3	0	0	0	0.26966	1	5430	5430		79.713	18.741	1	3779700			34288	4651	23596	23646	39401	39401					0.07822627103041668
KQGHVRSL	8	Unmodified	_KQGHVRSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;AMOTL1|p.Y334Lfs*3|1|0.26|ENSG00000166025|chr11:94800184-94800185|-/T|frameshift_variant;ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000126016|ENST00000371959|AMOT;ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.77252197265625	2	462.772326	923.530098	3.2521	0.001505	-3.2078	-0.0014845	0.044268	2.0486E-05	462.7707130102802	17.967	0.83086	17.967	17.795	18.626	0					33	16	5	0	0	0	0.73796	1	230	230		64.207	25.401	1	533790			34289	4177;7496	23597	23647	39402	39402					0.0652742908575874
KQGHVRSL	8	Unmodified	_KQGHVRSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;AMOTL1|p.Y334Lfs*3|1|0.26|ENSG00000166025|chr11:94800184-94800185|-/T|frameshift_variant;ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000126016|ENST00000371959|AMOT;ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7724304199219	2	462.772326	923.530098	0.34838	0.00016122	-0.29775	-0.00013779	0.050628	2.3429E-05	462.772063260141	18.16	0.68869	18.028	17.811	18.499	-0.13147					28	13	3	0	0	0	0.83003	1	248	248		56.721	12.604	1	459380			34290	4177;7496	23597	23647	39403	39403					0.0652742908575874
KQGHVRSL	8	Unmodified	_KQGHVRSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;AMOTL1|p.Y334Lfs*3|1|0.26|ENSG00000166025|chr11:94800184-94800185|-/T|frameshift_variant;ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000126016|ENST00000371959|AMOT;ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000126016|ENST00000371959|AMOT	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	462.772326	923.530098	0.082883	3.8356E-05	1.9387	0.00089718	2.0216	0.00093554	462.77286488183927	18.292	0.29755	18.089	17.915	18.212	-0.20371	0.036957	0.0029943	NaN	64.207	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118550			34291	4177;7496	23597	23647							0.0652742908575874
KQGPTGIHV	9	Unmodified	_KQGPTGIHV_					0	0	0		nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;ENSG00000135457|ENST00000257915|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.7661437988281	2	468.766709	935.518865	-0.83876	-0.00039318	0.0095096	4.4578E-06	-0.82925	-0.00038872	468.7665785449457	28.742	0.74933	28.742	28.362	29.112	0					46	17	4	0	0	0	0.16468	3	1698	1689;1698;1712		96.19	22.216	1	1803400			34292	4899	23598	23648	39404;39405;39406	39405					0.04852606991619268
KQGPTGIHV	9	Unmodified	_KQGPTGIHV_					0	0	0		nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;ENSG00000135457|ENST00000257915|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.76617431640625	2	468.766709	935.518865	-0.25341	-0.00011879	-0.60398	-0.00028312	-0.85739	-0.00040191	468.7662850227706	28.662	0.74829	28.658	28.374	29.122	-0.0042019					50	17	4	0	0	0	0.15366	3	1696	1671;1682;1696		98.629	35.323	1	1748900			34293	4899	23598	23648	39407;39408;39409	39409					0.04852606991619268
KQGPTGIHV	9	Unmodified	_KQGPTGIHV_					0	0	0		nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;ENSG00000135457|ENST00000257915|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.76629638671875	2	468.766709	935.518865	0.52832	0.00024766	-1.2907	-0.00060505	-0.7624	-0.00035739	468.7659358555304	28.426	1.0353	28.506	27.871	28.907	0.080811					52	24	4	0	0	0	0.12602	3	1607	1597;1607;1621		104.75	36.289	1	1984100			34294	4899	23598	23648	39410;39411;39412	39411					0.04852606991619268
KQGYVIYRI	9	Unmodified	_KQGYVIYRI_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.33203125	2	570.332216	1138.64988	-1.0375	-0.00059174	0.36609	0.00020879	-0.67146	-0.00038295	570.3323317190719	46.879	0.69715	46.938	46.657	47.354	0.059097					53	18	4	0	0	0	0.15029	1	4595	4595		99.375	25.12	1	4512700			34295	8493	23599	23649	39413	39413					0.08609997639655376
KQHDQVSKI	9	Unmodified	_KQHDQVSKI_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;RAI14|p.E674Dfs*10|1|0.25|ENSG00000039560|chr5:34823860-34823891|CTGAATATATCCATAAAGCAGAGCATGAGAAA/-|frameshift_variant	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.801025390625	2	541.80128	1081.58801	1.3356	0.00072361	-2.3984	-0.0012995	-1.0628	-0.00057585	541.7997447674439	18.779	0.7873	18.779	18.48	19.268	0					40	15	5	0	0	0	0.09527	2	341	329;341		112.11	26.946	1	1083600			34296	1063	23600	23650	39414;39415	39415					0.050476462205324424
KQHDQVSKI	9	Unmodified	_KQHDQVSKI_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;RAI14|p.E674Dfs*10|1|0.25|ENSG00000039560|chr5:34823860-34823891|CTGAATATATCCATAAAGCAGAGCATGAGAAA/-|frameshift_variant	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.8010864257812	2	541.80128	1081.58801	-0.56078	-0.00030383	-0.42178	-0.00022852	-0.98256	-0.00053235	541.8008307804212	18.932	0.78638	18.81	18.558	19.344	-0.12265					37	15	4	0	0	0	0.065	2	349	337;349		123.21	23.93	1	1111000			34297	1063	23600	23650	39416;39417	39417					0.050476462205324424
KQHETLTW	8	Unmodified	_KQHETLTW_					0	0	0			REV__ENSG00000198185|ENST00000692313|ZNF334	REV__ENSG00000198185|ENST00000692313|ZNF334	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7687377929688	2	521.769448	1041.52434	-0.055749	-2.9088E-05	-1.8899	-0.0009861	-1.9457	-0.0010152	521.7682300277141	52.433	0.55337	52.244	51.958	52.511	-0.18927					33	13	3	0	0	0	0.85409	1	5455	5455		54.765	1.4132	1	1842200	+		34298	28397	23601	23651	39418	39418					0.005242857834218739
KQHGALKGG	9	Unmodified	_KQHGALKGG_					0	0	0			REV__ENSG00000183888|ENST00000329454|SRARP	REV__ENSG00000183888|ENST00000329454|SRARP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2584228515625	2	448.259051	894.503549	-0.48408	-0.00021699	0.70156	0.00031448	0.21748	9.7486E-05	448.2593374436029	86.333	0.81569	86.357	86.072	86.888	0.023666					37	18	3	0	0	0	0.98128	1	10778	10778		24.203	0	1	464750	+		34299	27622	23602	23652	39419	39419					0.052077401944416124
KQHGVNVSV	9	Unmodified	_KQHGVNVSV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.26947021484375	2	484.269616	966.524678	-0.3897	-0.00018872	0.090951	4.4045E-05	-0.29874	-0.00014467	484.2694818444028	27.237	0.85153	27.237	26.993	27.844	0					59	22	4	0	0	0	0.14024	2	1467	1467;1485		101.6	35.171	1	2909200			34300	5667	23603	23653	39420;39421	39420					0.04007705503283887
KQHGVNVSV	9	Unmodified	_KQHGVNVSV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2701110839844	2	484.269616	966.524678	-0.47839	-0.00023167	0.11631	5.6324E-05	-0.36208	-0.00017534	484.2694969382859	27.201	1.0091	27.188	26.911	27.92	-0.012983					45	26	3	0	0	0	0.35646	1	1463	1463		68.787	4.5796	1	2732400			34301	5667	23603	23653	39422	39422					0.04007705503283887
KQHGVNVSV	9	Unmodified	_KQHGVNVSV_					0	0	0		nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2696228027344	2	484.269616	966.524678	-1.3468	-0.00065219	1.1289	0.00054667	-0.21789	-0.00010552	484.2699616756246	27.039	0.98903	27.12	26.883	27.872	0.081293					41	26	3	0	0	0	0.12602	2	1386	1386;1398		104.75	24.807	1	2843300			34302	5667	23603	23653	39423;39424	39423					0.04007705503283887
KQHKREKEI	9	Unmodified	_KQHKREKEI_					0	0	0			REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	599.3109741210938	2	598.348929	1194.6833	-1.655	-0.00099024	1.0898	0.00065208	-0.56516	-0.00033816	598.349980678194	82.319	1.2057	82.319	81.63	82.835	0					34	28	2	0	0	0	0.024263	1	10336	10336		42.396	0	1	82505	+		34303	37036	23604	23654	39425	39425					0.09374999411556928
KQIAFKLL	8	Unmodified	_KQIAFKLL_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.8006286621094	2	480.81567	959.616788	-0.6552	-0.00031503	1.9413	0.00093341	1.2861	0.00061838	480.81600759548115	94.295	0.43922	94.301	94.051	94.49	0.0059891					16	10	3	0	0	0	0.027866	1	11908	11908		26.796	8.4717	1	178460	+		34304	21178	23605	23655	39426	39426					0.13536415587611828
KQICKEFQDL	10	Unmodified	_KQICKEFQDL_					0	0	0		ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.8743896484375	3	417.884913	1250.63291	-0.84415	-0.00035276	0.36947	0.0001544	-0.47468	-0.00019836	417.88520665314354	37.219	0.38557	37	36.767	37.152	-0.2195					12	9	2	0	0	0	0.03519	1	2973	2973		30.569	6.0497	1	106510			34305	837	23606	23656	39427	39427					0.017617089715486145
KQICPEVEN	9	Unmodified	_KQICPEVEN_					0	0	0		ENST00000506052.1_1_17:48539604-48540054:+|nuORF;ACSF2|p.K271Qfs*25|1|0.12|ENSG00000167107|chr17:50463169-50463170|-/C|frameshift_variant;nc|ENSG00000167107|Q96CM8-4|ACSF2;ACSF2|p.K510Yfs*7|1|0.24|ENSG00000167107|chr17:50473717-50473721|AAGGA/-|frameshift_variant;nc|ENSG00000167107|Q96CM8-3|ACSF2;ENSG00000167107|ENST00000300441|ACSF2;nc|ENSG00000167107|Q96CM8-2|ACSF2	ENST00000506052.1_1_17:48539604-48540054:+|nuORF	ENST00000506052.1_1_17:48539604-48540054:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2821655273438	2	530.260599	1058.50665	-0.81806	-0.00043378	-2.6542	-0.0014074	-3.4723	-0.0018412	530.2590704670488	48.658	1.0843	48.505	47.957	49.041	-0.15277					82	30	4	0	0	0	0.02435	1	4928	4928		42.396	8.8806	1	987730			34306	17	23607	23657	39428	39428					-0.020267975337446842
KQIEINTI	8	Unmodified	_KQIEINTI_					0	0	0		ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7792663574219	2	479.782025	957.549496	0.54861	0.00026321	-0.41501	-0.00019912	0.1336	6.4097E-05	479.78183020559493	46.898	0.48905	46.898	46.587	47.076	0					28	12	3	0	0	0	0.27613	1	4670	4670		122.18	1.555	1	3110900			34307	2267	23608	23658	39429	39429					0.06902340586009359
KQIEINTI	8	Unmodified	_KQIEINTI_					0	0	0		ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	MSMS	OPSCC_39_ClassI_Rep-2	2	479.7785949707031	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.046	1	46.893	46.393	47.393	-0.15301								0	0	0	0.062647	1	4670	4670		152.47	18.658	1				34308	2267	23608	23658	39430	39430					0.06902340586009359
KQIEINTI	8	Unmodified	_KQIEINTI_					0	0	0		ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7790832519531	2	479.782025	957.549496	-0.34739	-0.00016667	0.5241	0.00025145	0.17671	8.478E-05	479.78219276190885	46.843	0.52068	46.894	46.616	47.136	0.051899					31	13	3	0	0	0	0.17959	1	4601	4601		143.89	30.475	1	2948000			34309	2267	23608	23658	39431	39431					0.06902340586009359
KQIEQQKKI	9	Unmodified	_KQIEQQKKI_					0	0	0		ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1;ENST00000545001.2_1_12:64732273-64732573:-|nuORF;ENST00000484653.5_1_22:18083848-18102283:-|nuORF;ENST00000478963.5_1_22:18095568-18111476:-|nuORF;nc|ENSG00000131100|P36543-3|ATP6V1E1;ENSG00000250565|ENST00000522587|ATP6V1E2	ENST00000481365.5_1_22:18080958-18102283:-|nuORF;ENSG00000250565|ENST00000522587|ATP6V1E2	ENST00000481365.5_1_22:18080958-18102283:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.8480834960938	2	571.84823	1141.68191	1.4109	0.00080681	-1.826	-0.0010442	-0.41511	-0.00023738	571.8470615765085	18.598	0.54016	18.598	18.382	18.922	0					28	10	4	0	0	0	0.062622	1	312	312		124.08	13.96	1	253360			34310	4496;10850	23609	23659	39432	39432					0.11673365322803875
KQIEQQKKI	9	Unmodified	_KQIEQQKKI_					0	0	0		ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1;ENST00000545001.2_1_12:64732273-64732573:-|nuORF;ENST00000484653.5_1_22:18083848-18102283:-|nuORF;ENST00000478963.5_1_22:18095568-18111476:-|nuORF;nc|ENSG00000131100|P36543-3|ATP6V1E1;ENSG00000250565|ENST00000522587|ATP6V1E2	ENST00000481365.5_1_22:18080958-18102283:-|nuORF;ENSG00000250565|ENST00000522587|ATP6V1E2	ENST00000481365.5_1_22:18080958-18102283:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.8479614257812	2	571.84823	1141.68191	0.04953	2.8324E-05	-0.31576	-0.00018056	-0.26622	-0.00015224	571.8479530623868	18.801	0.48984	18.669	18.45	18.94	-0.13147					25	9	4	0	0	0	0.077175	2	334	320;334		118.74	17.142	1	258050			34311	4496;10850	23609	23659	39433;39434	39434					0.11673365322803875
KQIEQQKKI	9	Unmodified	_KQIEQQKKI_					0	0	0		ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1;ENST00000545001.2_1_12:64732273-64732573:-|nuORF;ENST00000484653.5_1_22:18083848-18102283:-|nuORF;ENST00000478963.5_1_22:18095568-18111476:-|nuORF;nc|ENSG00000131100|P36543-3|ATP6V1E1;ENSG00000250565|ENST00000522587|ATP6V1E2	ENST00000481365.5_1_22:18080958-18102283:-|nuORF;ENSG00000250565|ENST00000522587|ATP6V1E2	ENST00000481365.5_1_22:18080958-18102283:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	571.84823	1141.68191	2.9364	0.0016792	-3.0141	-0.0017236	-0.077634	-4.4395E-05	571.8462896610519	18.741	0.24459	18.804	18.698	18.942	0.063307	0.11345	-0.0020185	NaN	124.08	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34740			34312	4496;10850	23609	23659							0.11673365322803875
KQIETKEL	8	Unmodified	_KQIETKEL_					0	0	0		nc|ENSG00000172554|Q9NY99-2|SNTG2;ENSG00000172554|ENST00000308624|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	MSMS	OPSCC_40_ClassI_Rep-3	6	494.7852783203125	2	494.787307	987.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.635	1	32.477	31.977	32.977	-0.15772								0	0	0	0.3668	1	2248	2248		71.296	2.5089	1				34313	8290	23610	23660	39435	39435					0.06578323240421469
KQIGAATYI	9	Unmodified	_KQIGAATYI_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7773132324219	2	482.776742	963.538931	-0.55076	-0.00026589	0.3071	0.00014826	-0.24366	-0.00011763	482.7767126382489	44.751	0.66199	44.751	44.417	45.079	0					58	18	4	0	0	0	0.16468	2	4312	4301;4312		96.19	19.344	1	3306000			34314	3504	23611	23661	39436;39437	39437					0.05570357931537728
KQIGAATYI	9	Unmodified	_KQIGAATYI_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7770690917969	2	482.776742	963.538931	-0.90595	-0.00043737	0.80056	0.00038649	-0.10539	-5.0881E-05	482.77693483770196	44.924	0.62477	44.775	44.455	45.079	-0.1488					54	17	4	0	0	0	0.39228	1	4319	4319		66.429	3.123	1	3290900			34315	3504	23611	23661	39438	39438					0.05570357931537728
KQIGAATYI	9	Unmodified	_KQIGAATYI_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7770690917969	2	482.776742	963.538931	-0.43851	-0.0002117	0.3562	0.00017197	-0.082303	-3.9734E-05	482.7767322549129	44.768	0.59592	44.805	44.542	45.138	0.0369					53	16	4	0	0	0	0.18915	2	4244	4244;4256		90.777	16.802	1	3709300			34316	3504	23611	23661	39439;39440	39439					0.05570357931537728
KQIKAKGL	8	Unmodified	_KQIKAKGL_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.2873229980469	2	443.297645	884.580737	-0.20393	-9.04E-05	-3.512	-0.0015569	-3.7159	-0.0016473	443.2953177255918	34.71	1.1818	34.523	34.078	35.26	-0.18675					36	29	3	0	0	0	0.027866	1	2641	2641		25.45	6.0902	1	128440			34317	4656	23612	23662	39441	39441					0.13382958410738865
KQIKAKGL	8	Unmodified	_KQIKAKGL_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.297645	884.580737	-0.17561	-7.7848E-05	-0.067628	-2.9979E-05	-0.24324	-0.00010783	443.2974615169705	34.702	0.40519	34.478	34.339	34.744	-0.22412	-0.05514	0.00012387	NaN	31.955	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126650			34318	4656	23612	23662							0.13382958410738865
KQIKAKGL	8	Unmodified	_KQIKAKGL_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.297645	884.580737	-0.37353	-0.00016559	0.091656	4.0631E-05	-0.28188	-0.00012495	443.2975854274182	34.805	0.44569	34.598	34.326	34.771	-0.20695	0.065251	0.00026509	NaN	31.955	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105880			34319	4656	23612	23662							0.13382958410738865
KQIKGAEIY	9	Unmodified	_KQIKGAEIY_					0	0	0			REV__ENSG00000106066|ENST00000265394|CPVL	REV__ENSG00000106066|ENST00000265394|CPVL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.7568359375	2	525.303124	1048.5917	-0.24522	-0.00012881	-2.0413	-0.0010723	-2.2865	-0.0012011	525.302088667771	34.865	0.3259	34.649	34.467	34.793	-0.21555					13	7	2	0	0	0	0.024541	1	2611	2611		27.882	7.8855	1	191170	+		34320	21592	23613	23663	39442	39442					0.06934315994362805
KQILDIRTYQ	10	Unmodified	_KQILDIRTYQ_					0	0	0			REV__ENSG00000170677|ENST00000397942|SOCS6	REV__ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.5790100097656	3	426.578588	1276.71394	0.33053	0.000141	0.70578	0.00030107	1.0363	0.00044207	426.5788493975335	36.177	1.6478	35.96	35.507	37.155	-0.21661					128	43	4	0	0	0	1.0002	1	2789	2789		42.338	17.27	1	5257800	+		34321	26493	23614	23664	39443	39443					0.08664733005957714
KQILLAKS	8	Unmodified	_KQILLAKS_					0	0	0			REV__ENST00000489421.1_1_1:41507155-41512268:-|nuORF	REV__ENST00000489421.1_1_1:41507155-41512268:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.80328369140625	2	450.797478	899.580402	1.2552	0.00056585	-0.96026	-0.00043288	0.29496	0.00013297	450.7969453614789	18.036	0.29447	17.879	17.805	18.099	-0.15637					9	5	2	0	0	0	0.027866	1	246	246		7.6903	0	1	129850	+		34322	33667	23615	23665	39444	39444					0.12659538690888894
KQILLAKS	8	Unmodified	_KQILLAKS_					0	0	0			REV__ENST00000489421.1_1_1:41507155-41512268:-|nuORF	REV__ENST00000489421.1_1_1:41507155-41512268:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	450.797478	899.580402	-0.012972	-5.8477E-06	0.65398	0.00029481	0.64101	0.00028897	450.7976876042959	18.045	0.29702	17.838	17.764	18.061	-0.20669	-0.020587	0.0011849	NaN	6.7355	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112410	+		34323	33667	23615	23665							0.12659538690888894
KQIQTLIQGTQ	11	Unmodified	_KQIQTLIQGTQ_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;chr22:45345569-45353978|138|19.05|0.54|5.15|-|ENST00000404354|SMC1B,SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.7037658691406	3	419.910227	1256.70885	-0.33856	-0.00014217	-2.7049	-0.0011358	-3.0434	-0.001278	420.24440311913634	33.562	0.15691	33.362	33.247	33.404	-0.20019					5	3	2	0	0	0	0.024746	1	2405	2405		26.75	4.9693	1	44446			34324	386	23616	23666	39445	39445					0.09076429143328824
KQIQTLIQGTQ	11	Unmodified	_KQIQTLIQGTQ_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;chr22:45345569-45353978|138|19.05|0.54|5.15|-|ENST00000404354|SMC1B,SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	419.910227	1256.70885	-0.62881	-0.00026405	4.7725	0.002004	4.1437	0.00174	419.9120108085962	33.399	0.24347	33.233	33.077	33.321	-0.16565	-0.064411	0.0088103	NaN	26.75	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71531			34325	386	23616	23666							0.09076429143328824
KQIRKQKP	8	Unmodified	_KQIRKQKP_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;OGDH|p.N950Qfs*3|1|0.26|ENSG00000105953|chr7:44707628-44707629|-/C|frameshift_variant	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.323486328125	2	513.33255	1024.65055	-0.93917	-0.0004821	3.928	0.0020164	2.9889	0.0015343	513.3342369907003	74.392	0.59359	74.401	74.138	74.731	0.0096588					27	13	3	0	0	0	0.027866	1	8991	8991		38.806	16.846	1	140590			34326	2737	23617	23667	39446	39446					0.13920837079353987
KQISHVVD	8	Unmodified	_KQISHVVD_					0	0	0			REV__nc|ENSG00000127084|Q5JSP0-2|FGD3	REV__nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2689208984375	2	463.258717	924.50288	0.44552	0.00020639	1.5431	0.00071485	1.9886	0.00092124	463.2583327136666	46.054	1.5857	46.105	45.287	46.873	0.051395					97	45	3	0	0	0	0.027866	1	4417	4417		29.15	8.2026	1	365840	+		34327	22917	23618	23668	39447	39447					0.037609007547075635
KQISIYLRLL	10	Unmodified	_KQISIYLRLL_					0	0	0		L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|5|1|sense	L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|5|1|sense	L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|5|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.5729675292969	3	416.267574	1245.78089	0.13963	5.8124E-05	-3.3831	-0.0014083	-3.2435	-0.0013501	416.2669849313721	42.008	0.46498	41.778	41.434	41.899	-0.23029					17	12	3	0	0	0	0.03519	1	3699	3699		25.126	0	1	107250			34328	17821	23619	23669	39448	39448					0.16783388287672096
KQISQAYEV	9	Unmodified	_KQISQAYEV_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2823486328125	2	533.282389	1064.55022	-1.0092	-0.0005382	-0.001458	-7.7752E-07	-1.0107	-0.00053898	533.2821919311193	38.883	0.62275	38.883	38.597	39.219	0					44	16	3	0	0	0	0.28047	1	3293	3293		78.264	0	1	2953700			34329	1808	23620	23670	39449	39449					0.02053135235018999
KQISQAYEV	9	Unmodified	_KQISQAYEV_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.2817993164062	2	533.282389	1064.55022	-1.398	-0.00074554	0.13111	6.9919E-05	-1.2669	-0.00067562	533.2822506286053	38.991	0.65757	39.015	38.727	39.385	0.023727					46	17	4	0	0	0	0.28047	1	3260	3260		78.264	18.333	1	3158100			34330	1808	23620	23670	39450	39450					0.02053135235018999
KQIVLTGI	8	Unmodified	_KQIVLTGI_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.284423828125	2	436.284203	870.553853	0.25478	0.00011115	-0.13918	-6.0721E-05	0.1156	5.0433E-05	436.28405021173364	52.917	0.84249	53.013	52.714	53.556	0.095669					56	22	4	0	0	0	0.12879	1	5630	5630		152.63	33.077	1	1988600			34331	1401	23621	23671	39451	39451					0.11339849799560398
KQKELDSKV	9	Unmodified	_KQKELDSKV_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.8123168945312	2	537.811313	1073.60807	-0.58226	-0.00031314	0.18769	0.00010094	-0.39457	-0.0002122	537.8113140892102	19.342	0.63838	19.223	18.953	19.591	-0.11872					35	12	5	0	0	0	0.6238	1	407	407		51.193	3.5354	1	329730			34332	3443	23622	23672	39452	39452					0.07421397160487686
KQKIKHVV	8	Unmodified	_KQKIKHVV_					0	0	0		nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-2|HMMR	nc|ENSG00000072571|O75330-2|HMMR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.324951171875	2	490.324194	978.633835	4.2588	0.0020882	-4.1953	-0.0020571	0.063464	3.1118E-05	490.3218754477692	17.844	0.3965	17.594	17.371	17.768	-0.25049					14	7	3	0	0	0	1.0239	1	207	207		33.516	1.5607	1	87430			34333	18076	23623	23673	39453	39453					0.14366336193415918
KQKILWILLSP	11	Unmodified	_KQKILWILLSP_					0	0	0		ENST00000286448.11_1_X:155149515-155169413:+|nuORF	ENST00000286448.11_1_X:155149515-155169413:+|nuORF	ENST00000286448.11_1_X:155149515-155169413:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2637634277344	3	446.955108	1337.84349	0.08832	3.9475E-05	4.2068	0.0018803	4.2951	0.0019197	446.9570362510216	46.122	0.38918	46.122	45.919	46.308	0					13	10	2	0	0	0	0.024801	1	4520	4520		23.378	5.5448	1	207620			34334	11758	23624	23674	39454	39454					0.18808534355912343
KQKKERKQELK	11	Unmodified	_KQKKERKQELK_					0	0	0		ENST00000557763.5_1_15:91524929-91537713:-|nuORF;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;ENST00000560605.1_1_15:91524929-91537723:-|nuORF;chr15:90981981-90984693|492|13.0|0.7|4.22|-|ENST00000557905|PRC1,PRC1;ENST00000417173.6_1_15:91524704-91537723:-|nuORF;nc|ENSG00000198901|O43663-3|PRC1	ENST00000557763.5_1_15:91524929-91537713:-|nuORF	ENST00000557763.5_1_15:91524929-91537713:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.7562255859375	3	481.631575	1441.8729	0.17873	8.6084E-05	-1.642	-0.00079083	-1.4632	-0.00070474	481.6298042869107	52.659	0.16002	52.532	52.472	52.632	-0.12705					5	3	2	0	0	0	0.02484	1	5479	5479		12.433	0	1	48411			34335	10242	23625	23675	39455	39455					0.1696344663405398
KQKNLILLH	9	Unmodified	_KQKNLILLH_					0	0	0		ENST00000267163.4_1_13:48881423-48881471:+|nuORF	ENST00000267163.4_1_13:48881423-48881471:+|nuORF	ENST00000267163.4_1_13:48881423-48881471:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8310546875	2	553.855858	1105.69716	-0.82138	-0.00045493	-0.10632	-5.8888E-05	-0.92771	-0.00051382	553.8559320390711	48.442	0.10503	48.344	48.257	48.362	-0.097553					4	2	2	0	0	0	0.024535	1	4798	4798		12.207	0	1	89663			34336	11614	23626	23676	39456	39456					0.1485427691068253
KQKNVSEEL	9	Unmodified	_KQKNVSEEL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	OPSCC_39_ClassI_Rep-1	1	537.7933349609375	2	537.793121	1073.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.98	1	24.98	24.48	25.48	0								0	0	0	0.31227	1	1137	1137		67.494	3.9598	1				34337	9787	23627	23677	39457	39457					0.03784520263752711
KQKNVSEEL	9	Unmodified	_KQKNVSEEL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.79443359375	2	537.793121	1073.57169	-0.42158	-0.00022672	-0.084704	-4.5553E-05	-0.50629	-0.00027228	537.7931323051521	24.817	0.61354	24.895	24.639	25.253	0.078344					29	13	5	0	0	0	0.247	1	1064	1064		82.75	13.123	1	704790			34338	9787	23627	23677	39458	39458					0.03784520263752711
KQKRRRRKHR	10	Unmodified	_KQKRRRRKHR_					0	0	0			REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.75836181640625	3	483.646776	1447.9185	0.12019	5.8129E-05	-0.99437	-0.00048092	-0.87418	-0.00042279	483.64619488951445	48.338	1.7392	48.151	47.825	49.564	-0.18684					159	46	5	0	0	0	0.03519	1	4969	4969		7.0187	2.9358	1	3289400	+		34339	25377	23628	23678	39459	39459					0.21245574450313143
KQLDDLKVEL	10	Unmodified	_KQLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.8451538085938	2	600.845353	1199.67615	-1.3992	-0.00084071	1.4085	0.00084632	0.0093355	5.6092E-06	600.8460650480768	54.911	0.80365	54.911	54.623	55.427	0					64	22	4	0	0	0	0.022628	1	6029	6029		174.86	76.283	1	2625600			34340	5073	23629	23679	39460	39460					0.08430222020501787
KQLDDLKVEL	10	Unmodified	_KQLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.8998107910156	3	400.899328	1199.67615	0.42642	0.00017095	0.57284	0.00022965	0.99926	0.0004006	400.89926246653636	54.998	0.86873	54.848	54.541	55.409	-0.15036					67	24	4	0	0	0	0.53069	1	6028	6028		84.817	3.901	1	3854500			34341	5073	23629	23679	39461	39461					0.08430222020501787
KQLDDLKVEL	10	Unmodified	_KQLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.8993835449219	3	400.899328	1199.67615	2.711	0.0010868	-1.7859	-0.00071597	0.92511	0.00037088	400.8982737116245	54.63	0.91246	54.728	54.458	55.371	0.098015					71	25	5	0	0	0	0.29144	1	5912	5912		109.83	6.875	1	3858000			34342	5073	23629	23679	39462	39462					0.08430222020501787
KQLDDLKVEL	10	Unmodified	_KQLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	600.8451538085938	2	600.845353	1199.67615	-1.0952	-0.00065802	1.0051	0.00060393	-0.090021	-5.4089E-05	600.8458427036514	54.652	0.84074	54.75	54.491	55.332	0.098015					63	23	4	0	0	0	0.075074	1	5923	5923		142.36	23.618	1	2844900			34343	5073	23629	23679	39463	39463					0.08430222020501787
KQLDDLKVEL	10	Unmodified	_KQLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	600.845353	1199.67615	-0.69779	-0.00041926	0.878	0.00052754	0.18021	0.00010828	600.8457551732802	54.991	0.65831	54.841	54.574	55.232	-0.15036	0.038748	2.8228E-05	NaN	174.86	57	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2430800			34344	5073	23629	23679							0.08430222020501787
KQLFWGFRAI	10	Unmodified	_KQLFWGFRAI_					0	0	0		ENST00000396663.2_1_7:12729148-12729286:+|nuORF	ENST00000396663.2_1_7:12729148-12729286:+|nuORF	ENST00000396663.2_1_7:12729148-12729286:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.84637451171875	3	422.576631	1264.70806	-0.075078	-3.1726E-05	-3.2231	-0.001362	-3.2982	-0.0013937	422.57524321255244	33.208	1.1673	32.976	32.67	33.837	-0.23107					81	28	5	0	0	0	0.03519	1	2329	2329		17.468	5.0352	1	1988100			34345	13561	23630	23680	39464	39464					0.08629679284945269
KQLHRVKGLE	10	Unmodified	_KQLHRVKGLE_					0	0	0			REV__ENSG00000184305|ENST00000509176|CCSER1	REV__ENSG00000184305|ENST00000509176|CCSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3651123046875	2	604.367121	1206.71969	-1.4686	-0.00088758	0.85378	0.00051599	-0.61484	-0.00037159	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.1081	1	13310	13310		19.997	0	1	4767200	+		34346	27655	23631	23681	39465	39465					0.12459876308275852
KQLHVKKV	8	Unmodified	_KQLHVKKV_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.3262634277344	2	490.324194	978.633835	-0.043119	-2.1142E-05	0.043092	2.1129E-05	-2.7591E-05	-1.3529E-08	490.32401403408716	17.848	0.34911	17.642	17.464	17.813	-0.20669					14	6	3	0	0	0	0.97924	1	228	228		40.573	0	1	105240	+		34347	23549	23632	23682	39466	39466					0.14366336193427287
KQLIAATI	8	Unmodified	_KQLIAATI_					0	0	0		nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.2763977050781	2	429.276378	856.538203	0.16693	7.166E-05	0.11145	4.7842E-05	0.27838	0.0001195	429.2763092470346	49.563	0.69937	49.563	49.287	49.986	0					49	18	4	0	0	0	0.05141	2	5122	5122;5134		180.49	79.283	1	3248400			34348	1263	23633	23683	39467;39468	39467					0.1041956328251672
KQLIAATI	8	Unmodified	_KQLIAATI_					0	0	0		nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.2769775390625	2	429.276378	856.538203	0.046993	2.0173E-05	0.34541	0.00014828	0.3924	0.00016845	429.27641255694516	49.75	0.70388	49.598	49.256	49.96	-0.1512					53	18	4	0	0	0	0.12427	3	5129	5129;5137;5153		153.88	68.525	1	3152800			34349	1263	23633	23683	39469;39470;39471	39469					0.1041956328251672
KQLIAATI	8	Unmodified	_KQLIAATI_					0	0	0		nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	429.2763977050781	2	429.276378	856.538203	-0.85897	-0.00036873	0.97501	0.00041855	0.11604	4.9814E-05	429.27665020087	49.494	0.89936	49.568	49.242	50.141	0.074192					59	24	4	0	0	0	0.05141	3	5042	5042;5051;5066		180.49	79.283	1	2980100			34350	1263	23633	23683	39472;39473;39474	39472					0.1041956328251672
KQLIAATI	8	Unmodified	_KQLIAATI_					0	0	0		nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	429.276378	856.538203	0.32725	0.00014048	0.43085	0.00018496	0.75811	0.00032544	429.27709103574443	49.86	0.33415	49.58	49.359	49.693	-0.27977	0.0025431	6.1472E-05	NaN	180.49	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127640			34351	1263	23633	23683							0.1041956328251672
KQLIAKQVLQ	10	Unmodified	_KQLIAKQVLQ_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.803955078125	2	584.874248	1167.73394	-0.84936	-0.00049677	-1.1502	-0.00067272	-1.9996	-0.0011695	584.8745681243367	53.547	0.38574	53.411	53.244	53.63	-0.13617					20	10	3	0	0	0	0.03519	1	5638	5638		35.618	5.1146	1	719450	+		34352	22298	23634	23684	39475	39475					0.15678528736566477
KQLIQQGDY	9	Unmodified	_KQLIQQGDY_					0	0	0		ENSG00000083535|ENST00000326291|PIBF1;ENST00000492803.1_1_13:73372062-73409389:+|nuORF;PIBF1|p.Q459Sfs*3|1|0.4|ENSG00000083535|chr13:72893834-72893835|-/T|frameshift_variant;PIBF1|p.L495Ifs*10|1|0.2|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant	ENSG00000083535|ENST00000326291|PIBF1	ENSG00000083535|ENST00000326291|PIBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3200073242188	2	546.787838	1091.56112	0.14765	8.0735E-05	2.8173	0.0015405	2.965	0.0016212	546.7894611045305	18.524	0.79121	18.32	18.163	18.954	-0.20371					19	15	2	0	0	0	0.024418	1	377	377		54.776	15.523	1	29755			34353	1754	23635	23685	39476	39476					0.019005376093446102
KQLIQQGDY	9	Unmodified	_KQLIQQGDY_					0	0	0		ENSG00000083535|ENST00000326291|PIBF1;ENST00000492803.1_1_13:73372062-73409389:+|nuORF;PIBF1|p.Q459Sfs*3|1|0.4|ENSG00000083535|chr13:72893834-72893835|-/T|frameshift_variant;PIBF1|p.L495Ifs*10|1|0.2|ENSG00000083535|chr13:72893937-72893938|-/A|frameshift_variant	ENSG00000083535|ENST00000326291|PIBF1	ENSG00000083535|ENST00000326291|PIBF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.787838	1091.56112	0.56039	0.00030642	2.2453	0.0012277	2.8057	0.0015341	546.7886267845664	18.464	0.54403	18.308	18.099	18.643	-0.15637	0.015181	0.00097636	NaN	54.776	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29303			34354	1754	23635	23685							0.019005376093446102
KQLKEKQKI	9	Unmodified	_KQLKEKQKI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.8652954101562	2	571.866423	1141.71829	2.7023	0.0015454	-3.025	-0.0017299	-0.32267	-0.00018452	571.8646883934581	17.442	0.24832	17.442	17.3	17.548	0					8	4	2	0	0	0	0.37611	1	171	171		67.494	16.301	1	40386			34355	18383	23636	23686	39477	39477					0.15310242219493375
KQLKEKQKI	9	Unmodified	_KQLKEKQKI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	571.866423	1141.71829	0.41833	0.00023923	-0.41924	-0.00023975	-0.0009025	-5.1611E-07	571.866104450524	17.621	0.22699	17.478	17.325	17.552	-0.14278	0.01812	0.0012361	NaN	67.494	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44952			34356	18383	23636	23686							0.15310242219493375
KQLKGKKAL	9	Unmodified	_KQLKGKKAL_					0	0	0			REV__nc|ENSG00000160710|P55265-3|ADAR	REV__nc|ENSG00000160710|P55265-3|ADAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.30780029296875	2	507.345126	1012.6757	-0.22774	-0.00011554	-2.0206	-0.0010251	-2.2483	-0.0011407	507.3442466448296	43.421	0.42985	43.309	43.145	43.575	-0.11253					17	11	3	0	0	0	0.024294	1	3976	3976		45.952	0	1	837210	+		34357	25338	23637	23687	39478	39478					0.16986891881936117
KQLKRVRIK	9	Unmodified	_KQLKRVRIK_					0	0	0			REV__ENSG00000121851|ENST00000369314|POLR3GL	REV__ENSG00000121851|ENST00000369314|POLR3GL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8032836914062	2	584.903674	1167.7928	-0.93423	-0.00054644	0.1367	7.9959E-05	-0.79753	-0.00046648	584.9045636615746	53.764	0.30857	53.519	53.348	53.657	-0.2453					21	8	4	0	0	0	0.024412	1	5667	5667		40.573	16.37	1	503440	+		34358	22611	23638	23688	39479	39479					0.21561049821525557
KQLKSPLKT	9	Unmodified	_KQLKSPLKT_					0	0	0			REV__ENSG00000162989|ENST00000295101|KCNJ3	REV__ENSG00000162989|ENST00000295101|KCNJ3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3070068359375	2	521.834591	1041.65463	-0.49237	-0.00025693	0.50875	0.00026548	0.016386	8.5508E-06	521.834622096769	53.062	0.45018	52.915	52.682	53.132	-0.14723					18	11	2	0	0	0	0.024319	1	5713	5713		47.657	0	1	191270	+		34359	25516	23639	23689	39480	39480					0.13546881782417586
KQLKSTMLL	9	Unmodified	_KQLKSTMLL_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.792724609375	2	531.323002	1060.63145	-0.51777	-0.0002751	-0.33988	-0.00018058	-0.85765	-0.00045569	531.3226161682259	24.869	0.43573	24.643	24.451	24.887	-0.22632					17	9	2	0	0	0	0.024495	1	1127	1127		42.396	3.1433	1	76146			34360	5239	23640	23690	39481	39481					0.1035611967342902
KQLKSTMLL	9	Unmodified	_KQLKSTMLL_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7927856445312	2	531.323002	1060.63145	-0.63588	-0.00033786	-0.31856	-0.00016926	-0.95444	-0.00050712	531.3227014598363	24.647	0.43655	24.473	24.296	24.733	-0.17484					17	9	2	0	0	0	0.024397	1	1092	1092		56.721	10.749	1	115490			34361	5239	23640	23690	39482	39482					0.1035611967342902
KQLKSTMLL	9	Unmodified	_KQLKSTMLL_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7926025390625	2	531.323002	1060.63145	1.7102	0.00090866	-2.6905	-0.0014295	-0.98032	-0.00052087	531.3213738158098	24.823	0.48192	24.648	24.336	24.818	-0.17449					16	10	2	0	0	0	0.024523	1	1073	1073		29.15	12.676	1	126960			34362	5239	23640	23690	39483	39483					0.1035611967342902
KQLPSSKNI	9	Unmodified	_KQLPSSKNI_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.26904296875	2	507.800749	1013.58694	-0.53933	-0.00027387	0.62492	0.00031734	0.085588	4.3462E-05	507.7999925870388	45.217	0.51605	45.006	44.637	45.153	-0.21109					17	13	2	0	0	0	0.024466	1	4224	4224		39.253	27.742	1	167410	+		34363	27385	23641	23691	39484	39484					0.08069431851606623
KQLQLTTV	8	Unmodified	_KQLQLTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.78411865234375	2	465.784567	929.554582	-1.1178	-0.00052067	0.31666	0.00014749	-0.80117	-0.00037317	465.78471077774174	44.433	1.2244	44.433	44.022	45.246	0					93	35	5	0	0	0	0.050517	4	4239	4228;4239;4250;4263		181.81	34.112	1	11477000			34364	9957	23642	23692	39485;39486;39487;39488	39486					0.08698644448588766
KQLQLTTV	8	Unmodified	_KQLQLTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.78497314453125	2	465.784567	929.554582	-1.0686	-0.00049773	0.42648	0.00019865	-0.64211	-0.00029908	465.7847421624004	44.584	1.2179	44.435	44.061	45.279	-0.1488					87	35	4	0	0	0	0.12938	5	4229	4229;4239;4251;4262;4276		152.47	35.019	1	10262000			34365	9957	23642	23692	39489;39490;39491;39492;39493	39489					0.08698644448588766
KQLQLTTV	8	Unmodified	_KQLQLTTV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.7845153808594	2	465.784567	929.554582	0.40336	0.00018788	-0.94832	-0.00044171	-0.54496	-0.00025383	465.7840932884199	44.453	1.1614	44.49	44.142	45.304	0.036903					82	33	4	0	0	0	0.04655	4	4194	4170;4182;4194;4207		187.63	49.391	1	9821400			34366	9957	23642	23692	39494;39495;39496;39497	39496					0.08698644448588766
KQLQLYEI	8	Unmodified	_KQLQLYEI_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;PTPN12|p.A306V|1|0.4|ENSG00000127947|chr7:77611024-77611024|C/T|missense_variant	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.795166015625	2	517.797675	1033.5808	-0.070643	-3.6579E-05	0.57629	0.0002984	0.50564	0.00026182	517.7980634425576	58.176	0.87744	58.176	57.91	58.787	0					68	23	4	0	0	0	0.74904	1	6604	6604		63.306	7.8021	1	5279900			34367	4268	23643	23693	39498	39498					0.06534913620089355
KQLQLYEI	8	Unmodified	_KQLQLYEI_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;PTPN12|p.A306V|1|0.4|ENSG00000127947|chr7:77611024-77611024|C/T|missense_variant	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7969360351562	2	517.797675	1033.5808	-0.63258	-0.00032755	1.0962	0.00056762	0.46364	0.00024007	517.7983785408373	58.033	0.98385	58.124	57.835	58.819	0.091217					68	26	4	0	0	0	0.35998	2	6486	6462;6486		102.77	9.5779	1	5101600			34368	4268	23643	23693	39499;39500	39500					0.06534913620089355
KQLSHIKKIL	10	Unmodified	_KQLSHIKKIL_					0	0	0		ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5535888671875	3	403.267686	1206.78123	0.2911	0.00011739	1.4393	0.00058043	1.7304	0.00069782	403.60264503876505	29.518	0.12167	29.345	29.284	29.406	-0.17258					4	2	2	0	0	0	0.03519	1	1812	1812		18.531	0	1	11090			34369	14271	23644	23694	39501	39501					0.18610808007565538
KQLSSMLVL	9	Unmodified	_KQLSSMLVL_					0	0	0		ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8034973144531	2	509.801903	1017.58925	-0.39701	-0.0002024	3.951	0.0020142	3.554	0.0018118	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	0.89441	1	10666	10666		32.812	0.85756	1	3182000			34370	5606	23645	23695	39502	39502					0.08116144265068215
KQLTLNPPE	9	Unmodified	_KQLTLNPPE_					0	0	0		ENST00000462569.5_1_21:46197196-46221663:-|nuORF;ENST00000477954.5_1_21:46194646-46221663:-|nuORF;ENSG00000184787|ENST00000345496|UBE2G2	ENST00000462569.5_1_21:46197196-46221663:-|nuORF	ENST00000462569.5_1_21:46197196-46221663:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.833984375	2	520.292756	1038.57096	-1.516	-0.00078878	-0.57951	-0.00030152	-2.0955	-0.0010903	520.2922579672975	20.742	0.43302	20.742	20.516	20.949	0					13	8	2	0	0	0	0.024397	1	584	584		56.721	16.663	1	70559			34371	9367	23646	23696	39503	39503					0.053217256147036096
KQLVAEQV	8	Unmodified	_KQLVAEQV_					0	0	0		ENST00000468414.1_1_3:127336783-127340613:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.7684326171875	2	457.768917	913.523281	1.1802	0.00054024	-0.77067	-0.00035279	0.40948	0.00018745	457.76842360997546	36.871	0.83752	36.871	36.613	37.45	0					40	21	3	0	0	0	0.4075	1	2967	2967		96.19	0	1	2138900			34372	1501	23647	23697	39504	39504					0.06306071414519465
KQLVAEQV	8	Unmodified	_KQLVAEQV_					0	0	0		ENST00000468414.1_1_3:127336783-127340613:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.768917	913.523281	0.035971	1.6467E-05	0.24694	0.00011304	0.28291	0.00012951	457.76892961048475	36.826	0.87719	36.864	36.579	37.456	0.038044	-0.060985	0.00024469	NaN	96.19	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2049400			34373	1501	23647	23697							0.06306071414519465
KQLVAEQV	8	Unmodified	_KQLVAEQV_					0	0	0		ENST00000468414.1_1_3:127336783-127340613:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.768917	913.523281	0.28679	0.00013128	-0.31763	-0.0001454	-0.03084	-1.4118E-05	457.76881350227285	37.336	0.65607	37.143	36.774	37.43	-0.193	0.21837	-0.0002722	NaN	96.19	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153330			34374	1501	23647	23697							0.06306071414519465
KQLVAEQV	8	Unmodified	_KQLVAEQV_					0	0	0		ENST00000468414.1_1_3:127336783-127340613:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	ENST00000468414.1_1_3:127336783-127340613:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.768917	913.523281	-0.093629	-4.286E-05	0.75967	0.00034775	0.66604	0.00030489	457.76940377164476	37.303	0.58924	37.094	36.844	37.434	-0.2092	0.16877	0.00071411	NaN	96.19	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82622			34375	1501	23647	23697							0.06306071414519465
KQLWLQLK	8	Unmodified	_KQLWLQLK_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A;nc|ENSG00000130038|Q9BSW2-1|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7633666992188	2	528.831852	1055.64915	-0.65263	-0.00034513	2.1467	0.0011353	1.4941	0.00079013	529.3365202520478	83.119	0.34167	83.146	82.874	83.215	0.02655					10	7	2	0	0	0	0.027866	1	10309	10309		38.806	0	1	76100			34376	4381	23648	23698	39505	39505					0.12355202990602265
KQMREGGL	8	Unmodified	_KQMREGGL_					0	0	0		ENST00000448704.5_1_7:43687258-43687378:-|nuORF	ENST00000448704.5_1_7:43687258-43687378:-|nuORF	ENST00000448704.5_1_7:43687258-43687378:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.25665283203125	2	459.744919	917.475285	-0.98084	-0.00045093	-0.93267	-0.00042879	-1.9135	-0.00087972	459.7437774990965	29.169	0.3763	29.169	29.032	29.408	0					14	9	2	0	0	0	0.027866	1	1794	1794		18.324	1.8513	1	135740			34377	14484	23649	23699	39506	39506					0.013246742228375297
KQMVPSSITMS	11	Unmodified	_KQMVPSSITMS_					0	0	0		TOX4|p.L375V|1|0.06|ENSG00000092203|chr14:21492739-21492739|T/G|missense_variant	TOX4|p.L375V|1|0.06|ENSG00000092203|chr14:21492739-21492739|T/G|missense_variant	TOX4|p.L375V|1|0.06|ENSG00000092203|chr14:21492739-21492739|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5112609863281	3	403.538636	1207.59408	1.3005	0.00052479	2.5766	0.0010397	3.8771	0.0015645	403.53970045841123	32.526	0.75011	32.333	32.029	32.779	-0.19262					40	17	3	0	0	0	0.024734	1	2205	2205		41.08	11.529	1	309710			34378	38100	23650	23700	39507	39507					-0.0014133965448763774
KQNDIINQL	9	Unmodified	_KQNDIINQL_					0	0	0			REV__ENSG00000080986|ENST00000261597|NDC80	REV__ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.337158203125	2	543.301113	1084.58767	-1.2337	-0.00067028	1.0396	0.00056481	-0.19413	-0.00010547	543.3017035926289	48.222	0.776	48.069	47.764	48.54	-0.15301					55	22	3	0	0	0	0.023061	1	4955	4955		90.37	0	1	1153400	+		34379	20669	23651	23701	39508	39508					0.04876226500641678
KQNRSILQWIR	11	Unmodified	_KQNRSILQWIR_					0	0	0		ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28326416015625	3	481.284398	1440.83137	1.0554	0.00050794	-2.9949	-0.0014414	-1.9395	-0.00093345	481.2829139480189	99.849	1.4264	99.714	98.502	99.929	-0.13526					95	35	3	0	0	0	1.0621	1	12378	12378		21.78	7.6944	1	417150			34380	14554	23652	23702	39509	39509					0.128583106654105
KQNRSILQWIR	11	Unmodified	_KQNRSILQWIR_					0	0	0		ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	481.284398	1440.83137	0.21042	0.00010127	-2.0908	-0.0010063	-1.8804	-0.00090501	481.28336681145055	99.643	1.4715	99.653	98.439	99.91	0.010231	-0.040197	0.00048843	NaN	21.78	90	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470800			34381	14554	23652	23702							0.128583106654105
KQNRSILQWIR	11	Unmodified	_KQNRSILQWIR_					0	0	0		ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	481.284398	1440.83137	0.27491	0.00013231	-2.0818	-0.001002	-1.8069	-0.00086964	481.2833824979054	99.72	1.6229	99.715	98.389	100.01	-0.0050812	0.02156	0.00050143	NaN	21.78	103	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412890			34382	14554	23652	23702							0.128583106654105
KQNRSILQWIR	11	Unmodified	_KQNRSILQWIR_					0	0	0		ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	481.284398	1440.83137	0.76107	0.00036629	-2.6108	-0.0012565	-1.8497	-0.00089024	481.28308109732075	99.868	1.6804	99.743	98.24	99.92	-0.12504	0.049624	-0.0002623	NaN	21.78	91	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416510			34383	14554	23652	23702							0.128583106654105
KQNRSILQWIR	11	Unmodified	_KQNRSILQWIR_					0	0	0		ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	ENST00000453780.1_1_1:26215480-26215597:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	481.284398	1440.83137	0.24064	0.00011582	-2.0699	-0.00099623	-1.8293	-0.00088041	481.2833986483841	99.812	1.6227	99.641	98.238	99.861	-0.17088	-0.051777	0.00051861	NaN	21.78	76	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354580			34384	14554	23652	23702							0.128583106654105
KQPDVILEA	9	Unmodified	_KQPDVILEA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7886047363281	2	506.787307	1011.56006	-0.072849	-3.6919E-05	-0.91638	-0.00046441	-0.98923	-0.00050133	506.7866795278597	49.037	0.85478	49.037	48.69	49.544	0					62	23	3	0	0	0	0.45795	1	5037	5037		62.107	1.1355	1	3169300			34385	6301	23653	23703	39510	39510					0.05474323240423473
KQPENVKGAL	10	Unmodified	_KQPENVKGAL_					0	0	0			REV__ENSG00000076826|ENST00000160298|CAMSAP3	REV__ENSG00000076826|ENST00000160298|CAMSAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.3099365234375	2	542.31148	1082.60841	-0.27561	-0.00014946	-2.7108	-0.0014701	-2.9864	-0.0016195	542.3103925748718	70.958	0.77809	70.701	70.468	71.246	-0.25712					29	18	3	0	0	0	0.80817	1	8285	8285		60.118	3.3972	1	4240100	+		34386	20573	23654	23704	39511	39511					0.07040816880339662
KQQKLDIGA	9	Unmodified	_KQQKLDIGA_					0	0	0			REV__ENST00000547135.5_1_12:49230675-49230801:-|nuORF	REV__ENST00000547135.5_1_12:49230675-49230801:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.79302978515625	2	500.792924	999.571294	-2.1727	-0.0010881	1.3672	0.00068466	-0.80553	-0.00040341	500.7936378130004	52.12	0.76794	51.851	51.548	52.316	-0.26903					50	20	3	0	0	0	0.31037	1	5392	5392		74.255	2.3776	1	11260000	+		34387	26847	23655	23705	39512	39512					0.07149145334562945
KQQQQQNQP	9	Unmodified	_KQQQQQNQP_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8448486328125	2	563.783619	1125.55268	-0.86572	-0.00048808	4.186	0.00236	3.3203	0.0018719	563.7857014481007	65.025	1.1548	65.062	64.743	65.898	0.037384					68	31	4	0	0	0	0.024487	1	7735	7735		31.955	17.818	1	4020400	+		34388	26290	23656	23706	39513	39513					-0.005070163073014555
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.3037719726562	2	581.304187	1160.59382	-2.2892	-0.0013307	1.9464	0.0011314	-0.34283	-0.00019929	581.3052936790625	30.527	1.1957	30.527	29.977	31.173	0					71	28	5	0	0	0	0.034181	3	1963	1953;1963;1975		138.24	50.488	1	2644400			34389	18498	23657	23707	39514;39515;39516	39515					0.01994744732178333
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.3040161132812	2	581.304187	1160.59382	-1.1709	-0.00068066	0.86089	0.00050044	-0.31003	-0.00018022	581.3046101548836	30.438	1.0726	30.447	29.88	30.953	0.0086708					74	25	5	0	0	0	0.01471	3	1940	1930;1940;1953		187.63	61.053	1	2517300			34390	18498	23657	23707	39517;39518;39519	39518					0.01994744732178333
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.3046264648438	2	581.304187	1160.59382	-0.94113	-0.00054709	0.63971	0.00037187	-0.30142	-0.00017522	581.3045705575585	29.994	1.0658	30.072	29.646	30.712	0.078232					65	25	4	0	0	0	0.015925	3	1834	1834;1847;1861		157.21	50.525	1	2295500			34391	18498	23657	23707	39520;39521;39522	39520					0.01994744732178333
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	581.304187	1160.59382	-0.5165	-0.00030024	-2.3541	-0.0013684	-2.8706	-0.0016687	581.3026853020651	30.138	0.55124	29.894	29.612	30.163	-0.24415	-0.043282	-0.0021304	NaN	157.21	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286060			34392	18498	23657	23707							0.01994744732178333
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.304187	1160.59382	-1.5888	-0.00092356	-1.2494	-0.0007263	-2.8382	-0.0016499	581.303294983236	30.021	0.59095	29.843	29.612	30.203	-0.17818	-0.094147	-0.00084616	NaN	157.21	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384270			34393	18498	23657	23707							0.01994744732178333
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.304187	1160.59382	-0.62711	-0.00036454	-2.1598	-0.0012555	-2.7869	-0.00162	581.3028359780247	30.088	0.47245	29.939	29.668	30.14	-0.14952	0.0019213	-0.0019045	NaN	157.21	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357740			34394	18498	23657	23707							0.01994744732178333
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000503853.1_1_5:176733373-176733568:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.304187	1160.59382	-0.62209	-0.00036162	-2.474	-0.0014381	-3.0961	-0.0017998	581.3033511008151	30.416	0.245	30.267	30.056	30.301	-0.14952	-0.1472	-0.0044431	NaN	187.63	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38259			34395	18498	23657	23707							0.01994744732178333
KQRELEKE	8	Unmodified	_KQRELEKE_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.2904052734375	2	530.293288	1058.57202	-0.92658	-0.00049136	0.37889	0.00020092	-0.54769	-0.00029043	530.2933451450294	50.908	0.43879	50.995	50.75	51.189	0.087009					18	11	2	0	0	0	0.027866	1	5312	5312		40.778	0	1	396400	+		34396	22351	23658	23708	39523	39523					0.045079399836367884
KQRITWVF	8	Unmodified	_KQRITWVF_					0	0	0			REV__ENST00000439058.5_1_7:20259242-20259338:+|nuORF	REV__ENST00000439058.5_1_7:20259242-20259338:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7991333007812	2	539.313826	1076.6131	0.42307	0.00022817	-3.2648	-0.0017607	-2.8417	-0.0015326	539.311542232913	71.111	0.49458	70.818	70.499	70.993	-0.29291					15	11	2	0	0	0	0.027866	1	8539	8539		13.775	0	1	254120	+		34397	32499	23659	23709	39524	39524					0.0778574581374869
KQRKKKGIKE	10	Unmodified	_KQRKKKGIKE_					0	0	0			REV__nc|ENSG00000107562|P48061-3|CXCL12	REV__nc|ENSG00000107562|P48061-3|CXCL12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.9013061523438	2	621.903871	1241.79319	-1.8282	-0.001137	-2.9575	-0.0018393	-4.7857	-0.0029763	621.901779649968	105.46	0.42779	105.33	105.07	105.5	-0.13099					28	11	3	0	0	0	1.1082	1	13146	13146		14.865	0	1	1094000	+		34398	36551	23660	23710	39525	39525					0.18196424750726692
KQRKVTMMV	9	Unmodified	_KQRKVTMMV_					0	0	0			REV__PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	REV__PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.7952270507812	2	560.820104	1119.62565	0.52975	0.00029709	3.3451	0.001876	3.8748	0.0021731	560.8218286328726	71.086	0.58418	71.086	70.868	71.453	0					27	14	3	0	0	0	0.024506	1	8639	8639		38.806	13.232	1	535820	+		34399	20678	23661	23711	39526	39526					0.07062697890137315
KQRLIPVT	8	Unmodified	_KQRLIPVT_					0	0	0		ENSG00000108830|ENST00000587250|RND2	ENSG00000108830|ENST00000587250|RND2	ENSG00000108830|ENST00000587250|RND2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7971496582031	2	477.808377	953.6022	1.2069	0.00057667	3.4675	0.0016568	4.6745	0.0022335	477.8101210519688	96.364	0.4774	96.366	96.274	96.751	0.0020676					17	10	2	0	0	0	0.027866	1	12232	12232		42.474	0	1	59930			34400	2938	23662	23712	39527	39527					0.12354343439471904
KQRNKADKGV	10	Unmodified	_KQRNKADKGV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.8174438476562	2	572.333279	1142.652	1.5117	0.0008652	-1.872	-0.0010714	-0.3603	-0.00020621	572.3321137629374	19.771	0.47893	19.837	19.637	20.116	0.066195					22	9	3	0	0	0	0.03519	1	402	402		51.193	13.381	1	90939			34401	1536	23663	23713	39528	39528					0.08638426377456199
KQRRRHWAFL	10	Unmodified	_KQRRRHWAFL_					0	0	0			REV__ENSG00000157890|ENST00000395614|MEGF11	REV__ENSG00000157890|ENST00000395614|MEGF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.6082763671875	3	466.605695	1396.79525	1.035	0.00048292	4.0344	0.0018825	5.0694	0.0023654	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.1246	1	12832	12832		23.523	8.829	1	655350	+		34402	25157	23664	23714	39529	39529					0.11272898279230503
KQRRTFEQRVE	11	Unmodified	_KQRRTFEQRVE_					0	0	0		ENST00000564638.1_1_16:87426033-87432506:+|nuORF;ENSG00000258102|ENST00000556529|MAP1LC3B2;ENSG00000140941|ENST00000268607|MAP1LC3B	ENST00000564638.1_1_16:87426033-87432506:+|nuORF	ENST00000564638.1_1_16:87426033-87432506:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.6992492675781	3	492.939179	1475.79571	-1.788	-0.00088138	-3.4341	-0.0016928	-5.2221	-0.0025742	492.93759060617276	28.689	0.47132	28.444	28.281	28.753	-0.24524					16	10	2	0	0	0	0.02483	1	1727	1727		10.998	0	1	58320			34403	5452	23665	23715	39530	39530					0.07684228417747363
KQSAQVSDVI	10	Unmodified	_KQSAQVSDVI_					0	0	0			REV__ENSG00000170681|ENST00000307584|CAVIN4	REV__ENSG00000170681|ENST00000307584|CAVIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7932739257812	2	537.793121	1073.57169	-0.42158	-0.00022672	-0.084704	-4.5553E-05	-0.50629	-0.00027228	537.7931323051521	24.817	0.61354	24.895	24.639	25.253	0.078344					29	13	5	0	0	0	0.69662	1	1074	1074		67.494	1.0644	1	704790	+		34404	26494	23666	23716	39531	39531					0.03784520263752711
KQSASRGKL	9	Unmodified	_KQSASRGKL_					0	0	0			REV__ENST00000435761.5_1_3:184018386-184019655:+|nuORF	REV__ENST00000435761.5_1_3:184018386-184019655:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7908630371094	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.4752	1	10478	10478		60.972	10.947	1	2003200	+		34405	32446	23667	23717	39532	39532					0.07903680911670108
KQSPPIVKI	9	Unmodified	_KQSPPIVKI_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.3233642578125	2	505.32386	1008.63317	-0.50478	-0.00025508	-0.68185	-0.00034456	-1.1866	-0.00059963	505.323416854462	38.998	1.0389	38.998	38.555	39.594	0					77	28	4	0	0	0	0.020687	3	3314	3303;3314;3328		148.99	61.29	1	6701200			34406	3369	23668	23718	39533;39534;39535	39534					0.12919496753715976
KQSPPIVKI	9	Unmodified	_KQSPPIVKI_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3236083984375	2	505.32386	1008.63317	-0.71102	-0.00035929	-0.49404	-0.00024965	-1.2051	-0.00060895	505.32355534166726	39.016	1.2532	38.917	38.475	39.728	-0.098755					90	34	4	0	0	0	0.030064	4	3308	3286;3297;3308;3321		141.52	50.92	1	6476200			34407	3369	23668	23718	39536;39537;39538;39539	39538					0.12919496753715976
KQSPPIVKI	9	Unmodified	_KQSPPIVKI_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.322998046875	2	505.32386	1008.63317	-0.86551	-0.00043736	-0.1245	-6.2915E-05	-0.99001	-0.00050028	505.32371075073075	39.179	1.171	39.203	38.807	39.978	0.023727					80	32	4	0	0	0	0.014918	4	3272	3272;3281;3293;3307		162.25	51.107	1	6293800			34408	3369	23668	23718	39540;39541;39542;39543	39540					0.12919496753715976
KQSRITPIQKP	11	Unmodified	_KQSRITPIQKP_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.5965270996094	3	432.597983	1294.77212	0.5329	0.00023053	-1.1691	-0.00050573	-0.63616	-0.0002752	432.59730734053363	105.36	0.92603	105.36	104.92	105.85	0					63	26	4	0	0	0	1.0557	1	13519	13519		26.75	8.2187	1	1981300			34409	4257;37903	23669	23719	39544	39544					0.13652414651210165
KQSTSFLV	8	Unmodified	_KQSTSFLV_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000107438|ENST00000329399|PDLIM1	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.25555419921875	2	455.255643	908.496732	0.23433	0.00010668	0.56803	0.0002586	0.80236	0.00036528	455.2554655464866	45.552	0.84056	45.552	45.181	46.021	0					77	24	5	0	0	0	0.71833	1	4425	4425		65.803	12.452	1	5071800			34410	38149	23670	23720	39545	39545					0.038823825231816045
KQSTSFLV	8	Unmodified	_KQSTSFLV_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000107438|ENST00000329399|PDLIM1	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.2557678222656	2	455.255643	908.496732	-0.39246	-0.00017867	1.2151	0.00055318	0.82264	0.00037451	455.25574281458364	45.644	0.87753	45.492	45.112	45.989	-0.15157					76	25	4	0	0	0	0.81662	1	4420	4420		57.811	13.28	1	5011300			34411	38149	23670	23720	39546	39546					0.038823825231816045
KQSTSFLV	8	Unmodified	_KQSTSFLV_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000107438|ENST00000329399|PDLIM1	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.2561340332031	2	455.255643	908.496732	0.033426	1.5217E-05	0.81527	0.00037116	0.84869	0.00038637	455.2555907508415	45.532	0.9499	45.576	45.074	46.024	0.043877					81	27	4	0	0	0	0.71833	2	4358	4358;4381		65.803	7.9919	1	5196900			34412	38149	23670	23720	39547;39548	39547					0.038823825231816045
KQSVPTKGQL	10	Unmodified	_KQSVPTKGQL_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-3|LY9	REV__nc|ENSG00000122224|Q9HBG7-3|LY9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3193969726562	2	543.319306	1084.62406	-0.72331	-0.00039299	0.18859	0.00010246	-0.53473	-0.00029053	543.3194521198021	59.51	1.4855	59.596	59.206	60.691	0.085682					94	39	4	0	0	0	1.0236	1	6744	6744		42.864	5.0528	1	8118900	+		34413	22633	23671	23721	39549	39549					0.08513103397399391
KQTDVLQQL	9	Unmodified	_KQTDVLQQL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.8035888671875	2	536.803488	1071.59242	-0.15363	-8.2471E-05	-0.24543	-0.00013175	-0.39906	-0.00021422	536.8032677967113	51.304	0.70572	51.304	51.03	51.736	0					54	19	5	0	0	0	0.03666	2	5447	5433;5447		136.27	15.4	1	3909100			34414	9952;677	23672	23722	39550;39551	39551					0.059491106434506946
KQTDVLQQL	9	Unmodified	_KQTDVLQQL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.803466796875	2	536.803488	1071.59242	-1.0211	-0.00054815	0.33592	0.00018033	-0.68521	-0.00036782	536.8035845495524	51.486	0.59167	51.339	51.084	51.676	-0.14735					44	16	4	0	0	0	0.020687	1	5446	5446		148.99	3.8311	1	2819100			34415	9952;677	23672	23722	39552	39552					0.059491106434506946
KQTDVLQQL	9	Unmodified	_KQTDVLQQL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.8031005859375	2	536.803488	1071.59242	-1.5991	-0.00085841	1.1149	0.00059851	-0.48416	-0.0002599	536.803996932299	51.162	0.57149	51.249	51.039	51.61	0.087006					43	15	4	0	0	0	0.023452	1	5341	5341		146.79	14.028	1	2862100			34416	9952;677	23672	23722	39553	39553					0.059491106434506946
KQTETKEF	8	Unmodified	_KQTETKEF_					0	0	0			REV__ENST00000558573.1_1_15:44968716-45003494:-|nuORF	REV__ENST00000558573.1_1_15:44968716-45003494:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7605895996094	2	505.761289	1009.50803	0.68316	0.00034551	-2.412	-0.0012199	-1.7289	-0.0008744	505.7600834624134	106.73	0.59353	106.73	106.39	106.98	0					46	19	3	0	0	0	1.0009	1	13716	13716		37.159	5.2042	1	386600	+		34417	35097	23673	23723	39554	39554					0.0036515982667424396
KQTHVKQAI	9	Unmodified	_KQTHVKQAI_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8140869140625	2	526.81419	1051.61383	1.9017	0.0010018	-2.4325	-0.0012815	-0.53083	-0.00027965	526.812894389391	18.358	0.39254	18.358	18.136	18.529	0					18	7	4	0	0	0	0.094442	1	277	277		112.41	38.156	1	237850			34418	9842	23674	23724	39555	39555					0.09008540462787096
KQTHVKQAI	9	Unmodified	_KQTHVKQAI_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.814208984375	2	526.81419	1051.61383	-0.10408	-5.4833E-05	-0.49217	-0.00025928	-0.59625	-0.00031411	526.8139551858773	18.514	0.49112	18.382	18.154	18.645	-0.13147					20	9	3	0	0	0	0.10174	2	295	286;295		110.12	40.492	1	218420			34419	9842	23674	23724	39556;39557	39557					0.09008540462787096
KQTHVKQAI	9	Unmodified	_KQTHVKQAI_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8139038085938	2	526.81419	1051.61383	4.0493	0.0021332	-4.2812	-0.0022554	-0.23195	-0.0001222	526.8118325821237	18.541	0.5866	18.605	18.307	18.893	0.063307					25	11	4	0	0	0	0.2508	2	270	258;270		82.241	25.519	1	123500			34420	9842	23674	23724	39558;39559	39559					0.09008540462787096
KQTKAPKEP	9	Unmodified	_KQTKAPKEP_					0	0	0			REV__nc|ENSG00000143248|O15539-3|RGS5	REV__nc|ENSG00000143248|O15539-3|RGS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8178100585938	2	513.800749	1025.58694	-0.14327	-7.3611E-05	0.98548	0.00050634	0.84222	0.00043273	513.8010571026605	72.593	0.45358	72.593	72.414	72.867	0					14	10	2	0	0	0	0.024017	1	8817	8817		75.043	7.5496	1	179880	+		34421	24216	23675	23725	39560	39560					0.07517431851601941
KQTKSFTV	8	Unmodified	_KQTKSFTV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.7689514160156	2	469.768917	937.523281	-0.43085	-0.0002024	0.42884	0.00020146	-0.0020044	-9.4161E-07	469.76906570334876	25.191	1.2497	25.191	24.874	26.124	0					52	29	2	0	0	0	0.42912	2	1184	1166;1184		93.195	19.221	1	4557900			34422	3480	23676	23726	39561;39562	39562					0.0520207141452147
KQTKSFTV	8	Unmodified	_KQTKSFTV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.7688903808594	2	469.768917	937.523281	-0.64421	-0.00030263	0.24792	0.00011647	-0.39628	-0.00018616	469.7692002267868	25.208	1.4809	25.174	24.591	26.072	-0.034395					96	34	5	0	0	0	0.34573	2	1160	1160;1174		104.75	19.387	1	4624700			34423	3480	23676	23726	39563;39564	39563					0.0520207141452147
KQTKSFTV	8	Unmodified	_KQTKSFTV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.7689514160156	2	469.768917	937.523281	0.80644	0.00037884	-0.8621	-0.00040499	-0.055661	-2.6148E-05	469.7684803108888	25.074	1.1378	25.154	24.871	26.008	0.08009					51	26	2	0	0	0	0.53593	2	1092	1092;1103		82.241	7.9855	1	4607700			34424	3480	23676	23726	39565;39566	39565					0.0520207141452147
KQTPKVLVV	9	Unmodified	_KQTPKVLVV_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.331298828125	2	506.331685	1010.64882	-0.70603	-0.00035748	-0.30105	-0.00015243	-1.0071	-0.00050992	506.3314802889581	37.612	0.76805	37.612	37.269	38.037	0					71	21	5	0	0	0	0.020687	3	3067	3067;3078;3090		148.99	84.78	1	9057300			34425	6133	23677	23727	39567;39568;39569	39567					0.14391783270752967
KQTPKVLVV	9	Unmodified	_KQTPKVLVV_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3310546875	2	506.331685	1010.64882	-0.75066	-0.00038008	-0.17284	-8.7514E-05	-0.9235	-0.0004676	506.3315675297456	37.532	0.77357	37.468	37.163	37.937	-0.063385					68	21	5	0	0	0	0.020687	4	3040	3040;3049;3061;3077		148.99	90.205	1	8192800			34426	6133	23677	23727	39570;39571;39572;39573	39570					0.14391783270752967
KQTPKVLVV	9	Unmodified	_KQTPKVLVV_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.3312072753906	2	506.331685	1010.64882	-0.46447	-0.00023518	-0.46762	-0.00023677	-0.9321	-0.00047195	506.331399104455	37.651	0.82784	37.683	37.339	38.167	0.032269					74	22	5	0	0	0	0.014918	4	3023	3013;3023;3034;3047		162.25	98.045	1	7710600			34427	6133	23677	23727	39574;39575;39576;39577	39575					0.14391783270752967
KQTPKVLVV	9	Unmodified	_KQTPKVLVV_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.31549072265625	2	506.331685	1010.64882	0.011895	6.0226E-06	3.5393	0.001792	3.5511	0.0017981	506.33178656712926	68.775	0.4497	68.79	68.644	69.094	0.015121					24	11	3	0	0	0	0.024541	1	8207	8207		21.96	1.013	1	266860			34428	6133	23677	23727	39578	39578					0.14391783270752967
KQTRKGTASDA	11	Unmodified	_KQTRKGTASDA_					0	0	0		nc|ENSG00000079841|Q86UR5-10|RIMS1;nc|ENSG00000079841|Q86UR5-9|RIMS1;nc|ENSG00000079841|Q86UR5-12|RIMS1;ENSG00000079841|ENST00000521978|RIMS1	nc|ENSG00000079841|Q86UR5-10|RIMS1	nc|ENSG00000079841|Q86UR5-10|RIMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.280517578125	2	581.812376	1161.6102	-0.27571	-0.00016041	3.6268	0.0021101	3.351	0.0019497	581.8143699126215	52.071	0.43666	51.887	51.598	52.035	-0.18404					16	11	2	0	0	0	0.024727	1	5401	5401		24.519	0	1	269270			34429	1677	23678	23728	39579	39579					0.03585825898312578
KQVARLLEA	9	Unmodified	_KQVARLLEA_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2881469726562	2	514.316566	1026.61858	-0.15698	-8.0738E-05	-0.1724	-8.8669E-05	-0.32938	-0.00016941	514.3162104117546	40.273	0.25917	40.048	39.891	40.15	-0.225					11	6	2	0	0	0	0.024205	1	3459	3459		44.117	6.9577	1	158080			34430	7670	23679	23729	39580	39580					0.10633424605566688
KQVEKLFEL	9	Unmodified	_KQVEKLFEL_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.330078125	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	0.64897	1	11467	11467		49.536	6.6718	1	19210000	+		34431	26217	23680	23730	39581	39581					0.0881915819995811
KQVEPTFNN	9	Unmodified	_KQVEPTFNN_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7635498046875	2	538.772188	1075.52982	-1.4492	-0.00078077	3.9301	0.0021174	2.4809	0.0013366	538.7741610028819	30.863	1.3259	30.863	30.384	31.71	0					51	31	3	0	0	0	0.024319	1	2136	2136		56.721	0	1	176450	+		34432	27801	23681	23731	39582	39582					-0.004920354247587966
KQVHACPLKIS	11	Unmodified	_KQVHACPLKIS_					0	0	0		ENST00000505916.5_1_4:186316867-186317047:-|nuORF	ENST00000505916.5_1_4:186316867-186317047:-|nuORF	ENST00000505916.5_1_4:186316867-186317047:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5702819824219	3	408.569147	1222.68561	0.84499	0.00034524	2.7834	0.0011372	3.6284	0.0014824	408.57004769770396	31.662	0.60513	31.731	31.486	32.092	0.068962					22	14	2	0	0	0	0.024746	1	2126	2126		26.75	13.242	1	134080			34433	15734	23682	23732	39583	39583					0.08317711824997787
KQVHACPLKIS	11	Unmodified	_KQVHACPLKIS_					0	0	0		ENST00000505916.5_1_4:186316867-186317047:-|nuORF	ENST00000505916.5_1_4:186316867-186317047:-|nuORF	ENST00000505916.5_1_4:186316867-186317047:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	408.569147	1222.68561	0.66019	0.00026973	2.8522	0.0011653	3.5124	0.0014351	408.570281783638	31.979	0.5121	31.979	31.749	32.262	0	0.13446	7.33E-05	NaN	26.75	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176330			34434	15734	23682	23732							0.08317711824997787
KQVHPDTGI	9	Unmodified	_KQVHPDTGI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000146047|ENST00000274764|H2BC1	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7694091796875	2	497.769448	993.524344	-0.43443	-0.00021624	0.044707	2.2254E-05	-0.38972	-0.00019399	497.76945550111066	25.176	1.4132	25.176	24.83	26.243	0					90	33	4	0	0	0	0.043667	5	1182	1147;1157;1169;1182;1197		131.03	46.814	1	9266400			34435	4066	23683	23733	39584;39585;39586;39587;39588	39587					0.027322857834292336
KQVHPDTGI	9	Unmodified	_KQVHPDTGI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000146047|ENST00000274764|H2BC1	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7694396972656	2	497.769448	993.524344	-0.97359	-0.00048463	0.6131	0.00030518	-0.36049	-0.00017944	497.7697469108518	25.231	1.2926	25.197	24.86	26.152	-0.034397					86	30	4	0	0	0	0.1158	4	1143	1143;1154;1167;1179		107.01	38.523	1	9065500			34436	4066	23683	23733	39589;39590;39591;39592	39589					0.027322857834292336
KQVHPDTGI	9	Unmodified	_KQVHPDTGI_					0	0	0		nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000233822|ENST00000612898|H2BC15;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000146047|ENST00000274764|H2BC1	nc|ENSG00000203814|Q5QNW6-2|H2BC18	nc|ENSG00000203814|Q5QNW6-2|H2BC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7693176269531	2	497.769448	993.524344	0.3334	0.00016596	-0.79398	-0.00039522	-0.46058	-0.00022926	497.76905215431776	25.11	1.3907	25.19	24.779	26.169	0.08009					84	32	4	0	0	0	0.1158	5	1086	1086;1096;1108;1121;1136		107.01	45.278	1	9241000			34437	4066	23683	23733	39593;39594;39595;39596;39597	39593					0.027322857834292336
KQVISTGI	8	Unmodified	_KQVISTGI_					0	0	0		ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	ENSG00000198315|ENST00000330236|ZKSCAN8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.719970703125	2	423.258185	844.501818	-1.0071	-0.00042624	1.6485	0.00069776	0.64149	0.00027152	423.25878260441453	39.882	0.6331	39.77	39.5	40.134	-0.11223					33	16	3	0	0	0	0.027866	1	3443	3443		108.09	36.21	1	571400			34438	10120	23684	23734	39598	39598					0.07334686385797795
KQVKAGHQV	9	Unmodified	_KQVKAGHQV_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.30743408203125	2	497.793258	993.571963	-1.0917	-0.00054342	0.79916	0.00039782	-0.29249	-0.0001456	497.7934727095536	21.743	0.38685	21.531	21.363	21.749	-0.2128					13	7	2	0	0	0	0.024506	1	703	703		30.504	5.0535	1	79676			34439	3189	23685	23735	39599	39599					0.0749198477428763
KQVLCDHMV	9	Unmodified	_KQVLCDHMV_					0	0	0		RNF213|p.E2500Q|1|0.28|ENSG00000173821|chr17:80345833-80345833|G/C|missense_variant	RNF213|p.E2500Q|1|0.28|ENSG00000173821|chr17:80345833-80345833|G/C|missense_variant	RNF213|p.E2500Q|1|0.28|ENSG00000173821|chr17:80345833-80345833|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.78466796875	2	536.767537	1071.52052	-0.37375	-0.00020062	-2.4951	-0.0013393	-2.8688	-0.0015399	536.7661304128995	55.887	0.62154	55.671	55.336	55.958	-0.21607					36	16	3	0	0	0	0.024381	1	6048	6048		37.159	19.794	1	1199600			34440	37839	23686	23736	39600	39600					-0.012378433062849581
KQVLNEGYD	9	Unmodified	_KQVLNEGYD_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.26708984375	2	533.264196	1064.51384	0.01996	1.0644E-05	-0.54238	-0.00028923	-0.52242	-0.00027859	533.765474606523	71.32	0.89027	71.32	70.828	71.718	0					31	22	2	0	0	0	0.024323	1	8676	8676		44.117	14.967	1	122350	+		34441	23549	23687	23737	39601	39601					-0.01583741661647764
KQVLNEGYD	9	Unmodified	_KQVLNEGYD_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.264196	1064.51384	-0.41672	-0.00022222	1.7895	0.00095427	1.3728	0.00073205	533.2651807249109	71.317	0.45804	71.055	70.824	71.282	-0.26199	-0.13148	0.0012684	NaN	32.812	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252700	+		34442	23549	23687	23737							-0.01583741661647764
KQVLNEGYD	9	Unmodified	_KQVLNEGYD_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.264196	1064.51384	0.35572	0.00018969	0.94608	0.00050451	1.3018	0.0006942	533.7655516425078	71.212	0.86773	71.006	70.79	71.658	-0.20613	-0.17982	0.00036888	NaN	32.812	24	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240680	+		34443	23549	23687	23737							-0.01583741661647764
KQVLRDLHRD	10	Unmodified	_KQVLRDLHRD_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|30|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|30|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|30|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.2660217285156	3	427.245832	1278.71567	0.063938	2.7317E-05	4.1399	0.0017688	4.2039	0.0017961	427.24781098180017	43.391	0.46533	43.278	43.071	43.536	-0.11253					31	12	3	0	0	0	0.03519	1	3986	3986		42.338	13.761	1	410780			34444	17880	23688	23738	39602	39602					0.0874578681452931
KQVNRVNDL	9	Unmodified	_KQVNRVNDL_					0	0	0			REV__ENSG00000196475|ENST00000358842|GK2	REV__ENSG00000196475|ENST00000358842|GK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.84814453125	2	543.306729	1084.59891	-0.15006	-8.1531E-05	4.361	0.0023694	4.211	0.0022878	543.309184517752	20.88	0.58101	20.712	20.444	21.025	-0.16774					18	11	2	0	0	0	0.02435	1	601	601		34.173	0	1	126470	+		34445	28186	23689	23739	39603	39603					0.059990485947992056
KQVQQPSV	8	Unmodified	_KQVQQPSV_					0	0	0		ENST00000416077.1_1_6:51274881-51275238:-|nuORF;nc|ENSG00000146457|Q15007-2|WTAP;ENSG00000146457|ENST00000621533|WTAP	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2587890625	2	457.258717	912.50288	-0.34406	-0.00015732	0.4315	0.00019731	0.087442	3.9984E-05	457.2588638222285	28.065	2.0457	28.065	27.215	29.26	0					140	51	6	0	0	0	0.05872	4	1590	1590;1602;1614;1627		172.03	37.22	1	9056300			34446	5887	23690	23740	39604;39605;39606;39607	39604					0.04312900754723614
KQVQQPSV	8	Unmodified	_KQVQQPSV_					0	0	0		ENST00000416077.1_1_6:51274881-51275238:-|nuORF;nc|ENSG00000146457|Q15007-2|WTAP;ENSG00000146457|ENST00000621533|WTAP	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2585144042969	2	457.258717	912.50288	-0.31537	-0.00014421	0.31924	0.00014598	0.0038746	1.7717E-06	457.25882290980485	28.026	2.128	28.021	27.178	29.306	-0.0042019					147	53	6	0	0	0	0.07768	4	1575	1575;1586;1598;1610		166.78	35.751	1	9381500			34447	5887	23690	23740	39608;39609;39610;39611	39608					0.04312900754723614
KQVQQPSV	8	Unmodified	_KQVQQPSV_					0	0	0		ENST00000416077.1_1_6:51274881-51275238:-|nuORF;nc|ENSG00000146457|Q15007-2|WTAP;ENSG00000146457|ENST00000621533|WTAP	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	ENST00000416077.1_1_6:51274881-51275238:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2586669921875	2	457.258717	912.50288	-0.37776	-0.00017274	0.32385	0.00014808	-0.053913	-2.4652E-05	457.25889559688653	27.695	1.8371	27.776	27.031	28.868	0.081293					112	46	4	0	0	0	0.18427	3	1511	1498;1511;1524		143.11	20.931	1	8532400			34448	5887	23690	23740	39612;39613;39614	39613					0.04312900754723614
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7873229980469	2	494.787307	987.560061	-0.10293	-5.093E-05	0.50415	0.00024945	0.40122	0.00019852	494.7871986815067	55.337	1.0713	55.187	54.929	56	-0.15036					49	29	4	0	0	0	0.51687	1	6098	6098		58.23	13.853	1	6304300			34449	2921	23691	23741	39615	39615					0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.787307	987.560061	0.97238	0.00048112	-0.57895	-0.00028646	0.39342	0.00019466	494.7866363821794	55.283	1.1261	55.283	54.944	56.07	0	0.074319	-0.0011793	NaN	58.23	55	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5688400			34450	2921	23691	23741							0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.787307	987.560061	-0.80192	-0.00039678	1.3394	0.00066272	0.53748	0.00026594	494.78753171909773	55.065	1.0847	55.164	54.881	55.965	0.098015	-0.044733	0.00071907	NaN	58.23	50	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6929800			34451	2921	23691	23741							0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.787307	987.560061	-1.0651	-0.00052699	2.094	0.0010361	1.0289	0.00050908	494.7878911595757	55.346	0.77733	55.2	54.911	55.688	-0.14609	-0.0085573	0.0014658	NaN	58.23	37	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1388700			34452	2921	23691	23741							0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.787307	987.560061	-0.12427	-6.1486E-05	0.80953	0.00040055	0.68527	0.00033906	494.787302720546	55.463	0.54984	55.233	54.997	55.547	-0.23087	0.02428	0.00019472	NaN	58.23	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1477800			34453	2921	23691	23741							0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.787307	987.560061	-0.43202	-0.00021376	1.1774	0.00058256	0.74538	0.0003688	494.78749015515234	55.4	0.92596	55.184	54.676	55.602	-0.21551	-0.023879	0.00055875	NaN	58.23	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1171600			34454	2921	23691	23741							0.06578323240432837
KQVTPVVAL	9	Unmodified	_KQVTPVVAL_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.802978515625	2	477.80276	953.590967	0.48703	0.0002327	-0.18327	-8.7566E-05	0.30376	0.00014514	477.8024405780935	52.412	0.77893	52.412	52.085	52.864	0					53	19	4	0	0	0	0.4752	2	5615	5615;5626		60.972	8.8055	1	2215300			34455	3403	23692	23742	39616;39617	39616					0.11231521345325746
KQVTPVVAL	9	Unmodified	_KQVTPVVAL_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.8029479980469	2	477.80276	953.590967	0.65893	0.00031484	-0.41855	-0.00019998	0.24039	0.00011486	477.8023414310917	52.491	0.73483	52.344	51.985	52.72	-0.14723					48	18	4	0	0	0	0.91321	1	5603	5603		31.53	1.0262	1	1850800			34456	3403	23692	23742	39618	39618					0.11231521345325746
KQVTPVVAL	9	Unmodified	_KQVTPVVAL_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8031005859375	2	477.80276	953.590967	-0.06748	-3.2242E-05	0.15013	7.1733E-05	0.08265	3.949E-05	477.8026391352436	52.339	0.74773	52.431	52.04	52.788	0.091938					52	18	4	0	0	0	0.75397	1	5525	5525		42.396	3.59	1	1812000			34457	3403	23692	23742	39619	39619					0.11231521345325746
KQWTRIRNLLL	11	Unmodified	_KQWTRIRNLLL_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3	REV__ENSG00000053747|ENST00000313654|LAMA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2695007324219	3	480.964777	1439.8725	1.5675	0.0007539	-2.0921	-0.0010062	-0.52466	-0.00025234	480.96327482345845	19.562	0.24793	19.328	19.176	19.424	-0.23345					5	4	2	0	0	0	0.024865	1	402	402		10.587	6.9677	1	9420.6	+		34458	20182	23693	23743	39620	39620					0.17016071704892965
KQWTRIRNLLL	11	Unmodified	_KQWTRIRNLLL_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3	REV__ENSG00000053747|ENST00000313654|LAMA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	480.964777	1439.8725	0.72638	0.00034936	-2.0567	-0.00098919	-1.3303	-0.00063983	480.9638862853071	19.582	0.24976	19.382	19.255	19.505	-0.2001	0.026907	1.59E-05	NaN	10.587	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12983	+		34459	20182	23693	23743							0.17016071704892965
KQYLSNLEL	9	Unmodified	_KQYLSNLEL_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8138427734375	2	554.305864	1106.59717	0.13377	7.4151E-05	1.1251	0.00062367	1.2589	0.00069782	554.3064579255038	58.614	0.60447	58.433	58.347	58.952	-0.18134					24	14	2	0	0	0	0.024319	1	6451	6451		47.657	0	1	1635800			34460	2994	23694	23744	39621	39621					0.048139947861727705
KQYMQLAIR	9	Unmodified	_KQYMQLAIR_					0	0	0		ENSG00000137393|ENST00000259939|RNF144B	ENSG00000137393|ENST00000259939|RNF144B	ENSG00000137393|ENST00000259939|RNF144B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8232421875	2	575.823701	1149.63285	-1.1962	-0.00068883	0.71493	0.00041167	-0.48132	-0.00027715	575.8240145752235	44.388	0.67838	44.243	43.883	44.561	-0.14471					68	19	4	0	0	0	0.55828	1	4222	4222		55.504	2.1528	1	5484300			34461	5116	23695	23745	39622	39622					0.06401753762179396
KQYVMLCV	8	Carbamidomethyl (C)	_KQYVMLC(Carbamidomethyl (C))V_	KQYVMLC(1)V		KQYVMLC(45)V		0	1	0			REV__ENSG00000112218|ENST00000229955|GPR63	REV__ENSG00000112218|ENST00000229955|GPR63	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7677001953125	2	520.767006	1039.51946	-0.22166	-0.00011544	-1.3179	-0.00068633	-1.5396	-0.00080176	520.7662782590676	47.647	4.0898	47.494	46.698	50.788	-0.153					259	116	4	0	0	0	0.95417	1	4828	4828		44.531	8.0843	1	67190000	+		34462	21979	23696	23746	39623	39623	285				0.001279423247979139
KQYVSLDMVVT	11	Unmodified	_KQYVSLDMVVT_					0	0	0		ENST00000578036.5_1_17:62801160-62825332:-|nuORF;ENST00000584585.1_1_17:62817020-62825332:-|nuORF;ENST00000580919.5_1_17:62811233-62825332:-|nuORF;ENST00000397718.8_1_17:62816508-62825332:-|nuORF	ENST00000578036.5_1_17:62801160-62825332:-|nuORF	ENST00000578036.5_1_17:62801160-62825332:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	642.343017578125	2	641.839213	1281.66387	-1.7534	-0.0011254	3.8881	0.0024955	2.1347	0.0013701	641.8418572607031	110.18	0.37907	110.06	109.87	110.25	-0.12524					38	15	4	0	0	0	1.0392	1	13547	13547		28.081	0.19925	1	180670			34463	13600	23697	23747	39624	39624					0.03430862285767944
KRAAELQK	8	Unmodified	_KRAAELQK_					0	0	0			REV__ENSG00000123610|ENST00000243347|TNFAIP6	REV__ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3000183105469	2	472.287808	942.561064	1.1089	0.00052373	-1.7035	-0.00080452	-0.59453	-0.00028079	472.28690979110587	18.231	0.29374	18.075	17.953	18.247	-0.15637					7	5	2	0	0	0	0.027866	1	276	276		29.15	23.228	1	22614	+		34464	22713	23698	23748	39625	39625					0.0874858239999412
KRACDTATCV	10	Unmodified	_KRACDTATCV_					0	0	0		nc|ENSG00000110680|P06881|CALCA	nc|ENSG00000110680|P06881|CALCA	nc|ENSG00000110680|P06881|CALCA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2527465820312	2	534.252251	1066.48995	-0.31876	-0.0001703	2.3725	0.0012675	2.0537	0.0010972	534.2536031125229	106.45	0.78381	106.45	105.92	106.7	-0.0013123					37	25	3	0	0	0	0.98754	1	13646	13646		47.657	5.1829	1	301900			34465	18168	23699	23749	39626	39626					-0.04063621691352637
KRAGVWKGKLH	11	Unmodified	_KRAGVWKGKLH_					0	0	0		ENST00000324822.15_1_17:7293318-7293747:-|nuORF	ENST00000324822.15_1_17:7293318-7293747:-|nuORF	ENST00000324822.15_1_17:7293318-7293747:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.2649841308594	3	427.263046	1278.76731	0.1987	8.4896E-05	2.9856	0.0012756	3.1843	0.0013605	427.26444300600974	54.063	2.6284	53.818	53.421	56.049	-0.2453					263	76	6	0	0	0	1.0764	1	5705	5705		17.833	1.3033	1	50149000			34466	12260	23700	23750	39627	39627					0.13907575299117525
KRAPQPGVE	9	Unmodified	_KRAPQPGVE_					0	0	0			REV__ENSG00000184863|ENST00000401878|RBM33	REV__ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2946472167969	2	491.277441	980.540328	-0.51863	-0.00025479	3.5886	0.001763	3.0699	0.0015082	491.2799047725012	56.558	0.31308	56.656	56.473	56.786	0.097893					11	8	2	0	0	0	0.024405	1	6232	6232		35.618	0	1	174650	+		34467	27706	23701	23751	39628	39628					0.04927992020327565
KRCMKIKT	8	Unmodified	_KRCMKIKT_					0	0	0			REV__nc|ENSG00000140600|Q99963-4|SH3GL3	REV__nc|ENSG00000140600|Q99963-4|SH3GL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2485656738281	2	504.296265	1006.57798	0.374	0.00018861	1.8562	0.00093607	2.2302	0.0011247	504.2971125789894	21.509	1.138	21.332	21.065	22.203	-0.17721					59	23	5	0	0	0	0.027866	1	739	739		35.618	4.0885	1	2221300	+		34468	36717	23702	23752	39629	39629					0.07495043689948488
KRDKVSSIQPF	11	Unmodified	_KRDKVSSIQPF_					0	0	0			REV__nc|ENSG00000100321|O43759-2|SYNGR1	REV__nc|ENSG00000100321|O43759-2|SYNGR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77789306640625	3	435.582221	1303.72483	-0.66498	-0.00028966	0.26283	0.00011449	-0.40215	-0.00017517	435.5822805719257	43.853	0.50819	43.853	43.548	44.056	0					24	13	2	0	0	0	0.024746	1	4161	4161		21.032	7.5243	1	352520	+		34469	21087	23703	23753	39630	39630					0.08512135380215113
KRDKVSSIQPF	11	Unmodified	_KRDKVSSIQPF_					0	0	0			REV__nc|ENSG00000100321|O43759-2|SYNGR1	REV__nc|ENSG00000100321|O43759-2|SYNGR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	435.582221	1303.72483	-0.81961	-0.00035701	-0.29709	-0.00012941	-1.1167	-0.00048641	435.58232408833146	44.026	0.42707	43.882	43.604	44.031	-0.14471	-0.010252	-0.00038267	NaN	21.032	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303410	+		34470	21087	23703	23753							0.08512135380215113
KRDKVSSIQPF	11	Unmodified	_KRDKVSSIQPF_					0	0	0			REV__nc|ENSG00000100321|O43759-2|SYNGR1	REV__nc|ENSG00000100321|O43759-2|SYNGR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	435.582221	1303.72483	0.16333	7.1145E-05	-1.3879	-0.00060454	-1.2245	-0.00053339	435.5820427752027	43.905	0.43302	43.941	43.743	44.176	0.036903	0.049531	-0.0018081	NaN	21.032	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233270	+		34471	21087	23703	23753							0.08512135380215113
KRDNTLGK	8	Unmodified	_KRDNTLGK_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.29864501953125	2	466.269616	930.524678	1.035	0.0004826	-1.9722	-0.00091959	-0.93719	-0.00043698	466.2685917898748	18.182	0.29381	18.026	17.854	18.148	-0.15637					9	5	2	0	0	0	0.027866	1	270	270		17.365	4.4058	1	77953	+		34472	36468	23704	23754	39631	39631					0.056637055032865646
KREHTKKVKE	10	Unmodified	_KREHTKKVKE_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8826904296875	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.1088	1	11902	11902		31.53	1.2121	1	3558500			34473	3389	23705	23755	39632	39632					0.12211243991396259
KRELACRG	8	Unmodified	_KRELACRG_					0	0	0			REV__ENST00000403018.2_2_7:69364353-69755408:+|nuORF	REV__ENST00000403018.2_2_7:69364353-69755408:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7153015136719	2	466.758361	931.502169	-0.41477	-0.0001936	-4.2504	-0.0019839	-4.6652	-0.0021775	466.75627939264984	26.19	0.57254	26.19	26.001	26.573	0					21	13	2	0	0	0	0.027866	1	1305	1305		44.117	12.162	1	97032	+		34474	31884	23706	23756	39633	39633					0.033677828340159977
KRENPLLP	8	Unmodified	_KRENPLLP_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10825358-10825926:-|nuORF	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.76702880859375	2	483.790184	965.565815	-0.33255	-0.00016089	-0.113	-5.4669E-05	-0.44556	-0.00021556	483.78993369463694	33.728	1.3954	33.723	33.449	34.845	-0.0045624					66	35	3	0	0	0	0.027866	1	2617	2617		55.504	4.1688	1	1462800			34475	695	23707	23757	39634	39634					0.08165466542754984
KRETLATLTT	10	Unmodified	_KRETLATLTT_					0	0	0		ENST00000508814.5_1_5:81474325-81572030:+|nuORF	ENST00000508814.5_1_5:81474325-81572030:+|nuORF	ENST00000508814.5_1_5:81474325-81572030:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.32958984375	2	567.32987	1132.64519	-0.57331	-0.00032526	0.55912	0.0003172	-0.014198	-8.0549E-06	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.1265	1	10832	10832		24.519	2.5593	1	5699600			34476	15792	23708	23758	39635	39635					0.08417068706239661
KRFAFIGG	8	Unmodified	_KRFAFIGG_					0	0	0			REV__ENST00000557435.1_1_14:70235056-70235245:+|nuORF	REV__ENST00000557435.1_1_14:70235056-70235245:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2587890625	2	448.261062	894.507572	-0.45695	-0.00020483	-4.249	-0.0019047	-4.706	-0.0021095	448.25902243845417	89.198	2.2068	89.035	88.471	90.677	-0.1626					108	52	4	0	0	0	1.0572	1	10879	10879		28.254	1.4582	1	9232100	+		34477	35069	23709	23759	39636	39636					0.05609829688148693
KRFAMAHGLW	10	Unmodified	_KRFAMAHGLW_					0	0	0			REV__ENSG00000180432|ENST00000316161|CYP8B1	REV__ENSG00000180432|ENST00000316161|CYP8B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2188720703125	3	406.218449	1215.63352	0.48052	0.0001952	-1.5022	-0.00061021	-1.0217	-0.00041501	406.21772505359985	46.107	0.66222	46.01	45.741	46.403	-0.096649					54	17	5	0	0	0	1.1266	1	4448	4448		29.17	1.5261	1	2443400	+		34478	27341	23710	23760	39637	39637					0.034325932019100946
KRFAPPKPK	9	Unmodified	_KRFAPPKPK_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2705688476562	2	534.837468	1067.66038	-0.33788	-0.00018071	-0.95951	-0.00051318	-1.2974	-0.00069389	534.8366503162862	52.712	0.70574	52.804	52.486	53.191	0.091938					45	18	3	0	0	0	0.024523	1	5546	5546		29.15	7.1897	1	1339900			34479	5014	23711	23761	39638	39638					0.12926025084743742
KRFEIIKE	8	Unmodified	_KRFEIIKE_					0	0	0		nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94234505-94239065:-|nuORF	nc|ENSG00000119912|P14735-2|IDE;ENST00000478361.6_1_10:94234505-94239065:-|nuORF	nc|ENSG00000119912|P14735-2|IDE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8172607421875	2	531.818941	1061.62333	-1.075	-0.00057169	-2.2563	-0.0011999	-3.3312	-0.0017716	531.8176500176528	90.231	1.1068	90.105	89.805	90.912	-0.12512					62	26	3	0	0	0	1.0574	1	11047	11047		27.882	0	1	575550			34480	3773;15144	23712	23762	39639	39639					0.09498308748334239
KRFPVGPPK	9	Unmodified	_KRFPVGPPK_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7691040039062	2	513.316369	1024.61818	-0.20853	-0.00010704	-4.0506	-0.0020793	-4.2592	-0.0021863	513.3141771074158	32.713	0.75355	32.775	32.428	33.182	0.062885					23	19	2	0	0	0	0.024323	1	2306	2306		63.306	8.53	1	101800			34481	8223	23713	23763	39640	39640					0.10686049676360199
KRFPVGPPK	9	Unmodified	_KRFPVGPPK_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.316369	1024.61818	-0.91618	-0.00047029	-3.2846	-0.001686	-4.2008	-0.0021563	513.3145346427566	32.985	0.34464	32.985	32.79	33.135	0	0.11204	0.00038892	NaN	63.306	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83116			34482	8223	23713	23763							0.10686049676360199
KRFPVGPPK	9	Unmodified	_KRFPVGPPK_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.316369	1024.61818	-0.69168	-0.00035505	-2.4617	-0.0012636	-3.1534	-0.0016187	513.3150608988794	32.851	0.49205	32.858	32.625	33.117	0.0066261	-0.014966	0.0012338	NaN	63.306	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105220			34483	8223	23713	23763							0.10686049676360199
KRFSAVKFKGR	11	Unmodified	_KRFSAVKFKGR_					0	0	0			REV__ENST00000542939.1_1_12:118576827-118582605:+|nuORF	REV__ENST00000542939.1_1_12:118576827-118582605:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.93865966796875	3	441.938451	1322.79352	-0.26583	-0.00011748	-1.4681	-0.00064881	-1.7339	-0.00076629	441.9376963025453	17.05	1.051	16.843	16.662	17.713	-0.20777					40	20	4	0	0	0	1.0788	1	136	136		17.167	3.0807	1	89201	+		34484	20848	23714	23764	39641	39641					0.14503844470573313
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.3207397460938	2	532.322183	1062.62981	-0.59727	-0.00031794	0.187	9.9542E-05	-0.41027	-0.0002184	532.3220949786048	30.27	0.66952	30.026	29.737	30.407	-0.24415					38	15	4	0	0	0	0.82115	1	1914	1914		37.812	0	1	829950			34485	10190	23715	23765	39642	39642					0.10100246699721538
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.322183	1062.62981	-1.7223	-0.00091684	1.1901	0.00063352	-0.53225	-0.00028333	532.322625257145	30.363	0.66135	30.363	30.096	30.758	0	0.22322	0.00067511	NaN	37.812	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693340			34486	10190	23715	23765							0.10100246699721538
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.322183	1062.62981	-0.8963	-0.00047712	0.54226	0.00028865	-0.35404	-0.00018847	532.322311417641	30.342	0.78636	30.351	30.082	30.868	0.0086708	0.21092	-1.4611E-05	NaN	37.812	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596590			34487	10190	23715	23765							0.10100246699721538
KRFSGTVRL	9	Unmodified	_KRFSGTVRL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.322183	1062.62981	-1.3172	-0.00070119	0.93715	0.00049886	-0.38009	-0.00020233	532.3224934202927	30.019	0.8709	30.095	29.88	30.751	0.075695	-0.044922	0.00040581	NaN	37.812	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494590			34488	10190	23715	23765							0.10100246699721538
KRFSIMEIK	9	Unmodified	_KRFSIMEIK_					0	0	0		ENST00000304895.8_1_7:65425676-65425877:-|nuORF	ENST00000304895.8_1_7:65425676-65425877:-|nuORF	ENST00000304895.8_1_7:65425676-65425877:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.3358154296875	2	576.333901	1150.65325	-0.17055	-9.8293E-05	3.5111	0.0020236	3.3406	0.0019253	576.3358277223913	18.424	0.44607	18.221	18.014	18.46	-0.20371					23	8	4	0	0	0	0.29158	1	298	298		76.774	27.333	1	301860			34489	11982	23716	23766	39643	39643					0.08394924422009353
KRFVKKRFVIF	11	Unmodified	_KRFVKKRFVIF_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MSMS	OPSCC_39_ClassI_Rep-2	2	489.9801025390625	3	489.98188	1466.92381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.66	1	111.65	111.15	112.15	-0.012985								0	0	0	1.7531	1	14017	14017		3.6191	0.21035	1		+		34490	25874	23717	23767	39644	39644					0.20902440469581052
KRFWRSWRRVY	11	Unmodified	_KRFWRSWRRVY_					0	0	0		ENST00000496222.1_1_3:160156960-160167504:-|nuORF;ENST00000483754.1_1_3:160156960-160167537:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.56304931640625	4	410.732472	1638.90078	-0.052106	-2.1401E-05	0.98293	0.00040372	0.93083	0.00038232	410.73285955635527	32.995	0.37143	32.764	32.544	32.916	-0.23107					14	8	2	0	0	0	0.024902	1	2304	2304		3.4087	3.0965	1	66521			34491	15290	23718	23768	39645	39645					0.1068881440480709
KRFWRSWRRVY	11	Unmodified	_KRFWRSWRRVY_					0	0	0		ENST00000496222.1_1_3:160156960-160167504:-|nuORF;ENST00000483754.1_1_3:160156960-160167537:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5633544921875	4	410.732472	1638.90078	-0.39582	-0.00016257	1.5195	0.0006241	1.1237	0.00046153	410.98357178714383	32.927	0.32207	32.761	32.556	32.879	-0.16565					12	7	2	0	0	0	0.024865	1	2266	2266		8.4073	5.3813	1	60617			34492	15290	23718	23768	39646	39646					0.1068881440480709
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8270263671875	2	538.826766	1075.63898	-0.88863	-0.00047882	0.49536	0.00026691	-0.39327	-0.0002119	538.8269211663855	55.038	1.1932	54.892	54.495	55.688	-0.14609					85	32	4	0	0	0	0.6238	2	5873	5862;5873		51.193	11.94	1	6456400			34493	757	23719	23769	39647;39648	39648					0.1041859526535518
KRGFRKPQREL	11	Unmodified	_KRGFRKPQREL_					0	0	0			REV__ENSG00000233608|ENST00000612363|TWIST2	REV__ENSG00000233608|ENST00000612363|TWIST2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2830505371094	3	472.28451	1413.8317	0.33486	0.00015815	-2.3061	-0.0010891	-1.9712	-0.00093097	472.2835584696348	100.36	0.67219	100.37	99.942	100.61	0.010117					35	17	3	0	0	0	1.0788	1	12806	12806		17.167	3.0807	1	292950	+		34494	28909	23720	23770	39649	39649					0.14133730385242416
KRGGVHTLL	9	Unmodified	_KRGGVHTLL_					0	0	0		nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.8056640625	2	490.803626	979.592698	-0.21035	-0.00010324	4.0114	0.0019688	3.8011	0.0018656	490.80581023863124	96.38	1.7799	96.38	95.991	97.771	0					101	40	5	0	0	0	0.50848	1	12335	12335		58.782	3.2778	1	5427400			34495	10824	23721	23771	39650	39650					0.1020857515395619
KRGKRGKKI	9	Unmodified	_KRGKRGKKI_					0	0	0		SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|30|2|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|30|2|sense	SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|30|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.8670654296875	2	535.867092	1069.71963	1.0163	0.00054462	-1.0511	-0.00056325	-0.03476	-1.8627E-05	535.8663742897232	17.491	0.3484	17.337	17.159	17.507	-0.15403					17	6	4	0	0	0	1.0101	1	191	191		18.324	1.8513	1	162750			34496	38015	23722	23772	39651	39651					0.1875592109893205
KRGLVACEL	9	Unmodified	_KRGLVACEL_					0	0	0			REV__ENST00000216484.6_1_14:78036824-78043187:-|nuORF	REV__ENST00000216484.6_1_14:78036824-78043187:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7850036621094	2	494.784044	987.553536	0.38939	0.00019266	4.268	0.0021117	4.6574	0.0023044	494.78527947553744	32.667	0.95605	32.475	32.029	32.985	-0.19261					52	22	4	0	0	0	0.27161	1	2279	2279		79.451	5.196	1	2605500	+		34497	29321	23723	23773	39652	39652					0.05926106808044551
KRGPKPKPL	9	Unmodified	_KRGPKPKPL_					0	0	0		nc|ENSG00000141582|O00257-3|CBX4;ENSG00000141582|ENST00000269397|CBX4	nc|ENSG00000141582|O00257-3|CBX4	nc|ENSG00000141582|O00257-3|CBX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.8033752441406	2	510.837468	1019.66038	-0.30402	-0.00015531	0.11834	6.045E-05	-0.18569	-9.4855E-05	510.8373694494273	45.91	0.65968	45.91	45.613	46.273	0					53	18	4	0	0	0	0.024541	1	4468	4468		24.203	15.971	1	2809200			34498	5510	23724	23774	39653	39653					0.15134025084728364
KRGRWPGPKAL	11	Unmodified	_KRGRWPGPKAL_					0	0	0		ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.592529296875	3	422.591163	1264.75166	-0.52618	-0.00022236	4.1627	0.0017591	3.6365	0.0015367	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	1.0532	1	5210	5210		24.232	1.6702	1	14959000			34499	13977	23725	23775	39654	39654					0.12987288782096584
KRGRWPGPKAL	11	Unmodified	_KRGRWPGPKAL_					0	0	0		ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5932922363281	3	422.591163	1264.75166	-0.089071	-3.7641E-05	3.7303	0.0015764	3.6412	0.0015387	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0327	2	5289	5181;5289		29.551	4.4248	1	15587000			34500	13977	23725	23775	39655;39656	39656					0.12987288782096584
KRGRWPGPKAL	11	Unmodified	_KRGRWPGPKAL_					0	0	0		ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.5928039550781	3	422.591163	1264.75166	0.31209	0.00013189	3.6096	0.0015254	3.9217	0.0016573	422.59259397297745	49.759	3.148	49.654	48.913	52.061	-0.10558					256	83	5	0	0	0	1.0371	1	5062	5062		28.577	0.93281	1	11811000			34501	13977	23725	23775	39657	39657					0.12987288782096584
KRGRWPGPKAL	11	Unmodified	_KRGRWPGPKAL_					0	0	0		ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	ENST00000420610.1_1_Y:14088999-14090148:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.5929260253906	3	422.591163	1264.75166	0.1726	7.2939E-05	3.8124	0.0016111	3.985	0.001684	422.5926910721887	50.01	3.5693	49.73	48.973	52.543	-0.27977					269	94	5	0	0	0	1.0074	1	5115	5115		35.178	3.544	1	10812000			34502	13977	23725	23775	39658	39658					0.12987288782096584
KRHGLHDRVE	10	Unmodified	_KRHGLHDRVE_					0	0	0			REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2315979003906	3	416.230294	1245.66905	0.30325	0.00012622	2.7347	0.0011383	3.038	0.0012645	416.23147739627103	21.058	1.9295	20.863	20.385	22.315	-0.19577					110	39	6	0	0	0	1.0074	1	604	604		45.022	6.2686	1	2798600	+		34503	28597	23726	23776	39659	39659					0.056043469832502524
KRHKQVRTV	9	Unmodified	_KRHKQVRTV_					0	0	0			REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.7882080078125	2	576.359631	1150.70471	-1.3101	-0.00075507	3.6236	0.0020885	2.3136	0.0013334	576.3600216554257	68.833	0.2972	68.833	68.68	68.977	0					15	7	3	0	0	0	0.024427	1	8275	8275		51.335	21.018	1	90157	+		34504	32578	23727	23777	39660	39660					0.1353842923092543
KRHLARTLLT	10	Unmodified	_KRHLARTLLT_					0	0	0		nc|ENSG00000125787|O43555-2|GNRH2;ENSG00000125787|ENST00000359100|GNRH2;nc|ENSG00000125787|O43555|GNRH2	nc|ENSG00000125787|O43555-2|GNRH2	nc|ENSG00000125787|O43555-2|GNRH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.59259033203125	3	403.591051	1207.75132	0.067704	2.7325E-05	3.1103	0.0012553	3.178	0.0012826	403.59230002804907	38.13	1.7655	37.908	37.309	39.074	-0.22149					113	41	4	0	0	0	1.1295	1	3100	3100		26.063	6.0329	1	8888900			34505	4140	23728	23778	39661	39661					0.15575869062217862
KRHNYVRKV	9	Unmodified	_KRHNYVRKV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.5757141113281	3	400.575513	1198.70471	1.7928	0.00071814	-1.6324	-0.00065391	0.16035	6.4231E-05	400.57484817452035	17.887	1.1879	17.733	17.458	18.645	-0.15403					49	23	4	0	0	0	0.74711	1	238	238		42.864	4.1107	1	686390			34506	3833	23729	23779	39662	39662					0.1133042923092944
KRHNYVRKV	9	Unmodified	_KRHNYVRKV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.5755615234375	3	400.575513	1198.70471	1.0915	0.00043721	-0.94766	-0.00037961	0.14379	5.76E-05	400.5751060913079	17.913	1.2405	17.706	17.464	18.705	-0.20669					50	24	3	0	0	0	0.54416	1	225	225		56.434	20.116	1	579950			34507	3833	23729	23779	39663	39663					0.1133042923092944
KRHNYVRKV	9	Unmodified	_KRHNYVRKV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.5756530761719	3	400.575513	1198.70471	3.4318	0.0013747	-3.1337	-0.0012553	0.29817	0.00011944	400.57419817092705	17.949	1.391	17.706	17.478	18.869	-0.24256					53	27	4	0	0	0	0.87816	1	219	219		33.922	4.3709	1	483170			34508	3833	23729	23779	39664	39664					0.1133042923092944
KRHPQPEF	8	Unmodified	_KRHPQPEF_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7767944335938	2	519.777608	1037.54066	-1.0729	-0.00055766	0.53074	0.00027586	-0.54215	-0.0002818	519.7776072411589	29.52	0.93202	29.598	29.284	30.216	0.078344					49	22	4	0	0	0	0.56592	2	1782	1771;1782		79.451	4.9344	1	1098100			34509	4695	23730	23780	39665;39666	39666					0.023394117401721815
KRIKNVDP	8	Unmodified	_KRIKNVDP_					0	0	0			REV__ENSG00000155026|ENST00000404406|RSPH10B	REV__ENSG00000155026|ENST00000404406|RSPH10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.80535888671875	2	485.295633	968.576714	-0.43981	-0.00021344	0.6649	0.00032267	0.22509	0.00010923	485.29533567515705	34.569	0.39338	34.565	34.336	34.73	-0.0045624					16	9	3	0	0	0	0.027866	1	2548	2548		35.618	20.753	1	635860	+		34510	24988	23731	23781	39667	39667					0.09116868917033116
KRIKVCEL	8	Unmodified	_KRIKVCEL_					0	0	0		nc|ENSG00000133488|Q9UDX3-2|SEC14L4;ENST00000320982.3_1_22:30886116-30899718:-|nuORF;ENSG00000133488|ENST00000255858|SEC14L4;ENST00000321205.9_1_22:30886096-30899699:-|nuORF	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.784423828125	2	494.802237	987.589921	-0.63038	-0.00031192	-2.9339	-0.0014517	-3.5643	-0.0017636	494.80051785372626	33.023	1.0446	32.857	32.276	33.321	-0.16565					50	25	3	0	0	0	0.845	1	2273	2273		55.504	4.1688	1	422620			34511	4713	23732	23782	39668	39668					0.09562983704768158
KRINHGSL	8	Unmodified	_KRINHGSL_					0	0	0		ENSG00000243284|ENST00000368100|VSIG8	ENSG00000243284|ENST00000368100|VSIG8	ENSG00000243284|ENST00000368100|VSIG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.77239990234375	2	462.772326	923.530098	0.93204	0.00043132	0.96236	0.00044535	1.8944	0.00087668	462.7727026039877	18.279	0.44219	18.123	17.904	18.346	-0.15637					19	8	4	0	0	0	1.0133	1	278	278		35.201	1.6851	1	351600			34512	10807	23733	23783	39669	39669					0.0652742908575874
KRITELVW	8	Unmodified	_KRITELVW_					0	0	0			REV__SCRN1|p.G172R|1|0.1|ENSG00000136193|chr7:29944007-29944007|C/G|missense_variant	REV__SCRN1|p.G172R|1|0.1|ENSG00000136193|chr7:29944007-29944007|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7617797851562	2	522.813659	1043.61277	0.27264	0.00014254	0.38766	0.00020267	0.6603	0.00034521	523.3157416791158	59.626	0.43747	59.377	59.211	59.648	-0.24842					18	10	2	0	0	0	0.027866	1	6595	6595		44.531	3.7529	1	251100	+		34513	37467	23734	23784	39670	39670					0.09270326093906078
KRIVELSGS	9	Unmodified	_KRIVELSGS_					0	0	0			REV__ENSG00000123358|ENST00000394825|NR4A1	REV__ENSG00000123358|ENST00000394825|NR4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7929992675781	2	494.792924	987.571294	0.62349	0.0003085	-0.51955	-0.00025707	0.10394	5.143E-05	494.79250735742147	19.134	0.54401	18.93	18.708	19.252	-0.20363					31	10	5	0	0	0	0.87448	1	385	385		34.173	3.6689	1	268160	+		34514	22690	23735	23785	39671	39671					0.07701145334578996
KRIVELSGS	9	Unmodified	_KRIVELSGS_					0	0	0			REV__ENSG00000123358|ENST00000394825|NR4A1	REV__ENSG00000123358|ENST00000394825|NR4A1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	494.792924	987.571294	0.62349	0.0003085	-0.51955	-0.00025707	0.10394	5.143E-05	494.79250735742147	19.134	0.54401	18.93	18.708	19.252	-0.20363	0.0094956	-0.00019748	NaN	34.173	31	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268160	+		34515	22690	23735	23785							0.07701145334578996
KRKGGVLI	8	Unmodified	_KRKGGVLI_					0	0	0			REV__JPH3|p.L354Cfs*117|1|0.25|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant	REV__JPH3|p.L354Cfs*117|1|0.25|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.7976989746094	2	435.797812	869.581071	-0.13601	-5.9274E-05	0.35546	0.00015491	0.21945	9.5635E-05	435.7978493609406	22.003	0.91733	21.801	21.276	22.194	-0.20199					44	18	3	0	0	0	1.0574	1	721	721		14.664	0.88877	1	262880	+		34516	24934	23736	23786	39672	39672					0.14106378130622943
KRKHTPFSD	9	Unmodified	_KRKHTPFSD_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.30517578125	2	558.301447	1114.58834	5.1699	0.0028864	-2.0898	-0.0011667	3.0801	0.0017196	558.3001720055087	17.013	0.31833	16.763	16.61	16.928	-0.25049					17	7	3	0	0	0	0.98697	1	104	104		23.042	2.0956	1	71620	+		34517	25824	23737	23787	39673	39673					0.03563065940375054
KRKKARAL	8	Unmodified	_KRKKARAL_					0	0	0			REV__nc|ENSG00000111554|Q8TC05-4|MDM1	REV__nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7767028808594	2	485.83526	969.655967	-1.1052	-0.00053697	0.42064	0.00020436	-0.6846	-0.0003326	485.8353651507059	29.471	0.23655	29.55	29.41	29.646	0.078344					10	5	2	0	0	0	0.027866	1	1745	1745		20.482	2.1574	1	49914	+		34518	21924	23738	23788	39674	39674					0.1699256066184489
KRKKVKLA	8	Unmodified	_KRKKVKLA_					0	0	0		ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A	ENST00000478196.6_1_2:55459960-55462152:+|nuORF	ENST00000478196.6_1_2:55459960-55462152:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7770690917969	2	485.847836	969.681119	-1.4689	-0.00071367	0.79331	0.00038543	-0.67561	-0.00032824	485.8478729276131	29.779	0.24317	29.779	29.611	29.855	0					8	5	2	0	0	0	0.027866	1	1835	1835		20.482	2.1574	1	27232			34519	5702	23739	23789	39675	39675					0.1950661546441097
KRKLKAIVA	9	Unmodified	_KRKLKAIVA_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8421020507812	2	513.860944	1025.70733	0.15809	8.1235E-05	-3.4403	-0.0017678	-3.2822	-0.0016866	513.8597890449685	23.539	0.20083	23.338	23.237	23.438	-0.20193					5	4	2	0	0	0	0.024487	1	959	959		40.573	3.5441	1	29310			34520	18160	23740	23790	39676	39676					0.19550884635896182
KRKLKELEQ	9	Unmodified	_KRKLKELEQ_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.3614501953125	2	586.361505	1170.70846	3.2598	0.0019114	-3.186	-0.0018682	0.073776	4.3259E-05	586.3593940465256	17.995	0.39635	17.752	17.528	17.924	-0.24256					18	7	4	0	0	0	0.87448	1	235	235		34.173	1.3601	1	143950	+		34521	25309	23741	23791	39677	39677					0.12993054214166477
KRKPYHKKRKY	11	Unmodified	_KRKPYHKKRKY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.31707763671875	3	511.315921	1530.92593	1.5336	0.00078416	-2.1861	-0.0011178	-0.65251	-0.00033364	511.31477414209905	16.62	0.23584	16.467	16.373	16.609	-0.15376					7	5	2	0	0	0	1.1135	1	88	88		3.2113	0.18535	1	26869			34522	5596	23742	23792	39678	39678					0.18170869207369833
KRKQEEEAE	9	Unmodified	_KRKQEEEAE_					0	0	0			REV__ENSG00000011275|ENST00000389902|RNF216;REV__MTHFD1L-RNF216|1|fusion	REV__MTHFD1L-RNF216|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.7911987304688	2	573.791109	1145.56767	-1.7849	-0.0010242	1.464	0.00084005	-0.3209	-0.00018413	573.7919479721929	21.122	1.0186	21.122	20.753	21.771	0					57	20	5	0	0	0	0.03849	1	618	618		134.81	12.635	1	1302600	+		34523	36397;19924	23743	23793	39679	39679					0.0007043077002890641
KRKQERAV	8	Unmodified	_KRKQERAV_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000599420.5_1_19:17312953-17313848:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3266296386719	2	507.811982	1013.60941	0.86346	0.00043847	-0.81558	-0.00041416	0.047877	2.4312E-05	507.81142275179144	19.881	0.39182	19.681	19.505	19.897	-0.2001					16	7	3	0	0	0	0.027866	1	487	487		47.916	1.9636	1	170030			34524	2071	23744	23794	39680	39680					0.1031507603989894
KRKQKSPQ	8	Unmodified	_KRKQKSPQ_					0	0	0			REV__ENST00000581832.1_1_17:61911770-61912211:-|nuORF	REV__ENST00000581832.1_1_17:61911770-61912211:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2864990234375	2	500.306532	998.598512	-0.37314	-0.00018668	4.0174	0.0020099	3.6443	0.0018233	500.8109220770627	45.091	0.55284	45.091	44.725	45.278	0					22	15	2	0	0	0	0.027866	1	4348	4348		56.721	35.774	1	378560	+		34525	35536	23745	23795	39681	39681					0.09915673665614122
KRKREEEEHRL	11	Unmodified	_KRKREEEEHRL_					0	0	0			REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.78814697265625	3	503.946334	1508.81717	0.99806	0.00050297	-0.39791	-0.00020053	0.60015	0.00030244	503.9461939687706	19.612	0.39608	19.379	19.176	19.572	-0.23345					13	7	2	0	0	0	0.024869	1	429	429		11.932	5.6115	1	41555	+		34526	28568	23746	23796	39682	39682					0.08311613446448973
KRKRKHGSL	9	Unmodified	_KRKRKHGSL_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.3534545898438	2	555.354348	1108.69414	0.80031	0.00044446	-2.1062	-0.0011697	-1.3059	-0.00072525	555.3530192204877	99.747	0.68683	99.622	99.234	99.921	-0.12458					49	18	4	0	0	0	0.94809	1	12385	12385		29.15	3.6994	1	835110			34527	4770	23747	23797	39683	39683					0.14414446576506634
KRKRSQPQ	8	Unmodified	_KRKRSQPQ_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3071899414062	2	514.309606	1026.60466	0.0054179	2.7865E-06	0.2844	0.00014627	0.28981	0.00014905	514.3098610723757	20.628	0.295	20.46	20.296	20.591	-0.16774					7	5	2	0	0	0	0.027866	1	552	552		30.504	12.179	1	34268			34528	2280	23748	23798	39684	39684					0.0924219189712403
KRKSKTDTT	9	Unmodified	_KRKSKTDTT_					0	0	0			REV__ENSG00000153130|ENST00000608372|SCOC	REV__ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.8068237304688	2	532.806562	1063.59857	-0.6814	-0.00036305	3.4821	0.0018553	2.8007	0.0014922	532.8082787405509	66.918	1.2038	66.673	66.496	67.7	-0.24517					58	32	3	0	0	0	0.75397	1	7672	7672		42.396	1.618	1	3655300	+		34529	24887	23749	23799	39685	39685					0.06931628874940543
KRKVEPPT	8	Unmodified	_KRKVEPPT_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7721862792969	2	477.790184	953.565815	0.36622	0.00017498	0.1186	5.6666E-05	0.48482	0.00023164	477.78991795074126	24.735	0.9382	24.813	24.275	25.213	0.078344					30	20	2	0	0	0	0.027866	1	1034	1034		19.36	0	1	128600			34530	4672	23750	23800	39686	39686					0.08717466542748298
KRKVINTP	8	Unmodified	_KRKVINTP_					0	0	0		ENST00000517951.5_1_5:156822576-156936463:-|nuORF;ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	ENST00000517951.5_1_5:156822576-156936463:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7721862792969	2	478.306001	954.597449	0.33163	0.00015862	-0.1487	-7.1125E-05	0.18293	8.7497E-05	478.30552902759075	24.813	0.59348	24.892	24.455	25.049	0.078344					17	12	2	0	0	0	0.027866	1	1034	1034		30.504	0	1	29315			34531	15921	23751	23801	39687	39687					0.11833459296701676
KRKWMTSL	8	Unmodified	_KRKWMTSL_					0	0	0		ENST00000523764.1_1_13:52602867-52602936:+|nuORF	ENST00000523764.1_1_13:52602867-52602936:+|nuORF	ENST00000523764.1_1_13:52602867-52602936:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.3031005859375	2	525.299862	1048.58517	1.7559	0.00092236	3.8789	0.0020376	5.6348	0.00296	525.3017732505265	63.719	1.1068	63.773	63.126	64.233	0.054104					100	30	4	0	0	0	0.42327	2	7376	7376;7388		94.006	16.689	1	6044900			34532	16050	23752	23802	39688;39689	39688					0.06282099562031362
KRKYEFFRRKL	11	Unmodified	_KRKYEFFRRKL_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3173217773438	3	524.31581	1569.9256	-0.16356	-8.5757E-05	3.6985	0.0019392	3.535	0.0018534	524.317660982787	17.148	0.30144	16.94	16.712	17.013	-0.20769					13	5	4	0	0	0	1.0921	1	144	144		13.508	6.8483	1	50027			34533	18072	23753	23803	39690	39690					0.16343449487521866
KRKYEFFRRKL	11	Unmodified	_KRKYEFFRRKL_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF;ENSG00000069869|ENST00000435532|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	524.31581	1569.9256	1.201	0.00062973	2.4217	0.0012697	3.6227	0.0018995	524.317041108015	17.186	0.30292	17.032	16.907	17.209	-0.15403	0.045647	-0.0011425	NaN	13.508	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90965			34534	18072	23753	23803							0.16343449487521866
KRKYFMEP	8	Unmodified	_KRKYFMEP_					0	0	0		chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.7927856445312	2	549.791869	1097.56919	3.2348	0.0017784	-1.582	-0.00086975	1.6528	0.0009087	549.7909538997509	18.292	0.39958	18.049	17.875	18.274	-0.24256					14	7	3	0	0	0	1.0574	1	258	258		26.796	1.3459	1	64589			34535	390	23754	23804	39691	39691					0.02430393325107616
KRKYFMEP	8	Unmodified	_KRKYFMEP_					0	0	0		chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.791869	1097.56919	0.77779	0.00042762	1.303	0.00071638	2.0808	0.001144	549.7923303000393	18.234	0.29338	18.078	17.904	18.197	-0.15637	0.022582	0.0009028	NaN	26.796	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57820			34536	390	23754	23804							0.02430393325107616
KRKYFMEP	8	Unmodified	_KRKYFMEP_					0	0	0		chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.791869	1097.56919	0.011051	6.0755E-06	1.3218	0.00072673	1.3329	0.00073281	549.7925507579899	18.243	0.34694	18.039	17.866	18.212	-0.20371	-0.016386	0.0009235	NaN	26.796	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47542			34537	390	23754	23804							0.02430393325107616
KRLAAAVPA	9	Unmodified	_KRLAAAVPA_					0	0	0			REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7509460449219	2	448.787444	895.560336	0.040608	1.8224E-05	0.24518	0.00011003	0.28578	0.00012826	448.7874140974269	28.545	0.61777	28.626	28.289	28.907	0.080811					43	14	4	0	0	0	0.024354	1	1578	1578		47.916	9.1095	1	876950	+		34538	32269	23755	23805	39692	39692					0.10837787750938332
KRLAAAVPA	9	Unmodified	_KRLAAAVPA_					0	0	0			REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.787444	895.560336	-0.831	-0.00037294	1.0697	0.00048007	0.2387	0.00010713	448.7877805618685	28.745	0.5832	28.745	28.49	29.073	0	0.045414	0.000363	NaN	47.916	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970560	+		34539	32269	23755	23805							0.10837787750938332
KRLAAAVPA	9	Unmodified	_KRLAAAVPA_					0	0	0			REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	448.787444	895.560336	-0.32174	-0.00014439	0.49942	0.00022413	0.17768	7.9742E-05	448.78751626939567	28.732	0.66421	28.728	28.458	29.122	-0.0042019	0.028158	-0.00014887	NaN	47.916	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963450	+		34540	32269	23755	23805							0.10837787750938332
KRLAEKYR	8	Unmodified	_KRLAEKYR_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENSG00000100296|ENST00000490103|THOC5;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.3209838867188	2	532.322183	1062.62981	-0.33551	-0.0001786	-0.2051	-0.00010918	-0.54061	-0.00028778	532.3219299379064	30.183	0.76423	30.034	29.792	30.556	-0.14952					41	17	4	0	0	0	0.95679	1	1883	1883		44.117	1.7207	1	1122900			34541	2170;12711	23756	23806	39693	39693					0.101002466996988
KRLAIKLPD	9	Unmodified	_KRLAIKLPD_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.7743530273438	2	527.342584	1052.67061	-0.28456	-0.00015006	0.43044	0.00022699	0.14587	7.6925E-05	527.3427537180913	61.736	0.44095	61.522	61.334	61.774	-0.21375					15	10	2	0	0	0	0.024427	1	6944	6944		51.335	25.885	1	292310			34542	1350	23757	23807	39694	39694					0.1463858801932929
KRLAIKLPD	9	Unmodified	_KRLAIKLPD_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.342584	1052.67061	-1.0378	-0.00054726	1.0271	0.00054166	-0.010631	-5.6064E-06	527.3429528283106	61.68	0.44672	61.502	61.245	61.691	-0.17781	-0.014641	0.00048409	NaN	51.335	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221620			34543	1350	23757	23807							0.1463858801932929
KRLAIKLPD	9	Unmodified	_KRLAIKLPD_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.342584	1052.67061	-0.10571	-5.5747E-05	-0.15419	-8.1311E-05	-0.2599	-0.00013706	527.342228055705	61.783	0.36088	61.526	61.383	61.744	-0.25725	0.0091597	-0.00076185	NaN	51.335	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287510			34544	1350	23757	23807							0.1463858801932929
KRLETFLSL	9	Unmodified	_KRLETFLSL_					0	0	0		ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	ENSG00000151689|ENST00000392329|INPP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8057861328125	2	553.832049	1105.64954	0.38579	0.00021366	-0.86509	-0.00047911	-0.4793	-0.00026545	553.8316499606262	68.427	0.52062	68.184	67.909	68.43	-0.24277					19	12	2	0	0	0	0.019995	1	7873	7873		113.41	14.782	1	162610			34545	6219	23758	23808	39695	39695					0.10094577919812764
KRLETHYRILF	11	Unmodified	_KRLETHYRILF_					0	0	0		ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.7957458496094	3	492.620899	1474.84087	-0.96888	-0.00047729	0.054854	2.7022E-05	-0.91403	-0.00045027	492.62092742567654	55.002	0.54808	54.856	54.608	55.156	-0.14609					18	14	2	0	0	0	0.024879	1	5870	5870		12.957	7.5446	1	154400			34546	8813	23759	23809	39696	39696					0.12244078950925541
KRLGALDLN	9	Unmodified	_KRLGALDLN_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.30206298828125	2	500.300916	998.587279	-0.45741	-0.00022884	-0.39514	-0.00019769	-0.85255	-0.00042653	500.3005740004996	32.661	0.64093	32.661	32.3	32.941	0					48	16	4	0	0	0	0.35646	1	2305	2305		68.787	8.6686	1	7413600	+		34547	20113	23760	23810	39697	39697					0.08792851571467963
KRLGALDLN	9	Unmodified	_KRLGALDLN_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3009033203125	2	500.300916	998.587279	-0.59248	-0.00029642	-0.36178	-0.000181	-0.95426	-0.00047742	500.30058323314984	32.528	0.55827	32.54	32.26	32.818	0.011799					38	14	3	0	0	0	0.56934	1	2258	2258		54.776	1.8396	1	7515500	+		34548	20113	23760	23810	39698	39698					0.08792851571467963
KRLGALDLN	9	Unmodified	_KRLGALDLN_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3008117675781	2	500.300916	998.587279	-0.15362	-7.6857E-05	-1.7973	-0.00089921	-1.951	-0.00097607	500.30038800266993	32.337	0.64147	32.4	32.125	32.766	0.062885					77	16	7	0	0	0	0.35646	2	2196	2196;2210		68.787	7.8149	1	6558300	+		34549	20113	23760	23810	39699;39700	39699					0.08792851571467963
KRLGSLGLQEV	11	Unmodified	_KRLGSLGLQEV_					0	0	0		ENST00000533499.1_1_11:62560034-62562480:-|nuORF	ENST00000533499.1_1_11:62560034-62562480:-|nuORF	ENST00000533499.1_1_11:62560034-62562480:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.5755920410156	3	400.575067	1198.70337	1.7928	0.00071814	-0.51952	-0.00020811	1.2733	0.00051003	400.57484817452035	17.887	1.1879	17.733	17.458	18.645	-0.15403					49	23	4	0	0	0	1.0123	1	227	227		34.087	0.16487	1	686390			34550	16317	23761	23811	39701	39701					0.11196750351518858
KRLIAPPT	8	Unmodified	_KRLIAPPT_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2899475097656	2	448.28982	894.565087	-0.15755	-7.0627E-05	0.30883	0.00013844	0.15128	6.7818E-05	448.28978826424395	53.079	0.81418	52.932	52.569	53.383	-0.14723					55	21	4	0	0	0	0.87148	1	5699	5699		53.351	1.0523	1	2533500	+		34551	27786	23762	23812	39702	39702					0.1135867189370856
KRLKCVKSK	9	Unmodified	_KRLKCVKSK_					0	0	0			REV__nc|ENSG00000119231|Q96HI0-2|SENP5	REV__nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.282958984375	2	545.349886	1088.68522	0.10652	5.8091E-05	-1.0874	-0.00059302	-0.98089	-0.00053493	545.8500684338949	50.921	0.37471	50.741	50.61	50.984	-0.18071					18	9	4	0	0	0	0.024541	1	5223	5223		19.997	0	1	497270	+		34552	22444	23763	23813	39703	39703					0.14442336895808694
KRLKEYRVF	9	Unmodified	_KRLKEYRVF_					0	0	0		ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8695068359375	2	619.87204	1237.72953	0.0094928	5.8843E-06	-4.2055	-0.0026069	-4.196	-0.002601	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	0.92825	1	11988	11988		30.504	2.6214	1	4373200			34553	14046	23764	23814	39704	39704					0.12017064313636183
KRLKEYRVF	9	Unmodified	_KRLKEYRVF_					0	0	0		ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.87204	1237.72953	-1.6623	-0.0010304	-2.7538	-0.001707	-4.4161	-0.0027374	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	0.80658	1	11446	11446		38.806	4.6336	1	1925500			34554	14046	23764	23814	39705	39705					0.12017064313636183
KRLPVPKPKRL	11	Unmodified	_KRLPVPKPKRL_					0	0	0			REV__ENST00000522955.5_1_8:38663104-38684943:+|nuORF	REV__ENST00000522955.5_1_8:38663104-38684943:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.2533874511719	3	444.638113	1330.89251	-0.024254	-1.0784E-05	2.5011	0.0011121	2.4769	0.0011013	444.97464148884876	28.919	0.34628	29	28.784	29.13	0.080811					11	8	2	0	0	0	0.02489	1	1666	1666		9.2118	3.2108	1	114410	+		34555	24561	23765	23815	39706	39706					0.2402986743547899
KRLSLKSIH	9	Unmodified	_KRLSLKSIH_					0	0	0		ENST00000512756.5_1_1:103343642-103343708:-|nuORF	ENST00000512756.5_1_1:103343642-103343708:-|nuORF	ENST00000512756.5_1_1:103343642-103343708:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8056030273438	2	541.345658	1080.67676	-0.80009	-0.00043313	0.19187	0.00010387	-0.60823	-0.00032926	541.3456480877085	52.937	1.0817	53.033	52.325	53.407	0.095669					48	28	3	0	0	0	0.024466	1	5568	5568		39.253	14.734	1	1000000			34556	15860	23766	23816	39707	39707					0.139651062508392
KRLSLLRSP	9	Unmodified	_KRLSLLRSP_					0	0	0		ENST00000472888.1_1_13:37399651-37402473:+|nuORF;ENSG00000133111|ENST00000255476|RFXAP	ENST00000472888.1_1_13:37399651-37402473:+|nuORF	ENST00000472888.1_1_13:37399651-37402473:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.3438720703125	2	535.345658	1068.67676	-0.7049	-0.00037737	-2.9376	-0.0015726	-3.6425	-0.00195	535.343906018597	76.256	0.72273	76.256	75.956	76.678	0					40	17	4	0	0	0	0.70156	1	9391	9391		45.972	1.5951	1	1761400			34557	4685	23767	23817	39708	39708					0.1451710625085525
KRLYRAPI	8	Unmodified	_KRLYRAPI_					0	0	0		nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7687072753906	2	508.821818	1015.62908	-0.057865	-2.9443E-05	-1.7212	-0.00087577	-1.779	-0.00090522	508.820764498044	41.433	0.60056	41.433	41.225	41.825	0					35	16	3	0	0	0	0.027866	1	3791	3791		20.482	1.1219	1	677000			34558	3743	23768	23818	39709	39709					0.12189452050654381
KRLYRAPI	8	Unmodified	_KRLYRAPI_					0	0	0		nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.821818	1015.62908	-0.10604	-5.3954E-05	-1.8744	-0.00095376	-1.9805	-0.0010077	508.8206394914196	41.595	0.52962	41.618	41.429	41.958	0.023003	0.11371	3.0715E-05	NaN	20.482	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	682840			34559	3743	23768	23818							0.12189452050654381
KRLYRAPI	8	Unmodified	_KRLYRAPI_					0	0	0		nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.821818	1015.62908	-0.49508	-0.00025191	-2.1179	-0.0010776	-2.613	-0.0013295	508.82022147440944	41.732	0.30731	41.504	41.355	41.662	-0.2278	-8.0969E-05	-0.00021704	NaN	20.482	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76619			34560	3743	23768	23818							0.12189452050654381
KRLYRAPI	8	Unmodified	_KRLYRAPI_					0	0	0		nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	nc|ENSG00000119523|Q9H553-2|ALG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.821818	1015.62908	-0.33527	-0.00017059	-3.4705	-0.0017659	-3.8057	-0.0019364	508.8199483626217	41.733	0.29703	41.502	41.354	41.651	-0.23029	-0.0021398	-0.0015935	NaN	20.482	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83769			34561	3743	23768	23818							0.12189452050654381
KRMNNMVGMF	10	Oxidation (M)	_KRMNNMVGM(Oxidation (M))F_		KRMNNM(0.009)VGM(0.99)F		KRM(-35)NNM(-20)VGM(20)F	0	0	1			REV__ENSG00000122550|ENST00000339077|KLHL7	REV__ENSG00000122550|ENST00000339077|KLHL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.1952819824219	3	415.196328	1242.56715	-0.21286	-8.838E-05	-1.9921	-0.00082712	-2.205	-0.0009155	415.19541319844507	42.026	1.2372	41.903	41.527	42.765	-0.12299					68	32	3	0	0	0	1.0236	1	3752	3752		42.864	10.114	3	3109600	+		34562	22652	23769	23819	39710	39710		671			-0.04442726746651715
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.30126953125	2	558.301447	1114.58834	-0.40887	-0.00022828	-1.089	-0.000608	-1.4979	-0.00083628	558.3011740389971	29.412	0.62812	29.263	28.956	29.584	-0.14952					46	14	4	0	0	0	0.70156	1	1770	1770		45.972	0.020292	1	1065300			34563	4199	23770	23820	39711	39711					0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.301447	1114.58834	-1.3127	-0.00073291	0.94159	0.00052569	-0.37116	-0.00020722	558.3018143212649	29.569	0.35945	29.569	29.333	29.692	0	0.18127	0.00094717	NaN	45.972	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181900			34564	4199	23770	23820							0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.301447	1114.58834	-0.82402	-0.00046005	0.71487	0.00039911	-0.10916	-6.0942E-05	558.301776850663	29.499	0.3951	29.503	29.276	29.672	0.0031357	0.11475	0.00069401	NaN	45.972	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162450			34565	4199	23770	23820							0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.301447	1114.58834	-0.38776	-0.00021649	-0.23863	-0.00013323	-0.6264	-0.00034972	558.3010260223122	29.361	0.3993	29.439	29.128	29.527	0.078344	0.051196	-0.00037067	NaN	45.972	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148920			34566	4199	23770	23820							0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.301447	1114.58834	-0.88912	-0.00049639	0.31295	0.00017472	-0.57616	-0.00032167	558.3015333910504	29.536	0.72524	29.291	29.011	29.736	-0.24524	-0.097204	0.00024523	NaN	45.972	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828020			34567	4199	23770	23820							0.03563065940352317
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.301447	1114.58834	-0.59837	-0.00033407	-0.22067	-0.0001232	-0.81903	-0.00045727	558.3012538403646	29.436	0.68098	29.263	28.937	29.618	-0.17258	-0.12478	-0.00035061	NaN	45.972	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	809750			34568	4199	23770	23820							0.03563065940352317
KRNQIPGG	8	Unmodified	_KRNQIPGG_					0	0	0			REV__ENSG00000110328|ENST00000227756|GALNT18	REV__ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.25140380859375	2	435.251226	868.487899	-0.42314	-0.00018417	0.40683	0.00017707	-0.016314	-7.1006E-06	435.2513153868404	92.011	2.0391	92.011	90.97	93.009	0					95	48	3	0	0	0	1.0574	1	11668	11668		20.482	0	1	2036300	+		34569	21852	23771	23821	39712	39712					0.04839453677391248
KRNQIPGG	8	Unmodified	_KRNQIPGG_					0	0	0			REV__ENSG00000110328|ENST00000227756|GALNT18	REV__ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2516784667969	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	1.0574	1	9949	9949		25.45	1.2474	1	1610700	+		34570	21852	23771	23821	39713	39713					0.04839453677391248
KRNQIPGG	8	Unmodified	_KRNQIPGG_					0	0	0			REV__ENSG00000110328|ENST00000227756|GALNT18	REV__ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2513427734375	2	435.251226	868.487899	-0.12255	-5.3339E-05	-0.018907	-8.2295E-06	-0.14146	-6.1569E-05	435.25111460879765	92.192	2.6749	92.07	91.036	93.711	-0.12242					106	62	3	0	0	0	1.0239	1	11347	11347		33.516	1.5607	1	1311600	+		34571	21852	23771	23821	39714	39714					0.04839453677391248
KRPFWFGA	8	Unmodified	_KRPFWFGA_					0	0	0			REV__ENST00000394411.8_1_5:146257648-146258181:-|nuORF	REV__ENST00000394411.8_1_5:146257648-146258181:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.3033447265625	2	504.774337	1007.53412	0.024416	1.2324E-05	0.94418	0.0004766	0.96859	0.00048892	504.77643613173683	24.319	1.2097	24.104	23.425	24.635	-0.2151					22	8	4	0	0	0	0.027866	1	980	980		26.796	0	1	107710	+		34572	31668	23772	23822	39715	39715					0.030655185794671524
KRPGGATK	8	Unmodified	_KRPGGATK_					0	0	0			REV__ENST00000440293.5_1_12:48191201-48213572:-|nuORF	REV__ENST00000440293.5_1_12:48191201-48213572:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.5384216308594	2	407.748319	813.482085	0.032889	1.3411E-05	0.3894	0.00015878	0.42229	0.00017219	407.74837976760165	31.013	0.45104	30.828	30.533	30.984	-0.18503					15	10	2	0	0	0	0.027866	1	1981	1981		11.511	0	1	83240	+		34573	32526	23773	23823	39716	39716					0.06788355165701887
KRPKTAEEIK	10	Unmodified	_KRPKTAEEIK_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.57525634765625	3	400.575067	1198.70337	3.4318	0.0013747	-2.0208	-0.00080947	1.4111	0.00056524	400.57419817092705	17.949	1.391	17.706	17.478	18.869	-0.24256					53	27	4	0	0	0	1.118	1	208	208		20.03	0	1	483170			34574	5446	23774	23824	39717	39717					0.11196750351496121
KRPLGPRGRVC	11	Unmodified	_KRPLGPRGRVC_					0	0	0			REV__ENST00000573456.5_1_15:74488585-74490170:-|nuORF	REV__ENST00000573456.5_1_15:74488585-74490170:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8704833984375	2	619.866766	1237.71898	0.45812	0.00028397	3.6142	0.0022403	4.0723	0.0025243	619.8688770335856	104.94	0.57281	104.78	104.47	105.04	-0.16485					46	20	3	0	0	0	1.0399	1	13038	13038		27.882	12.24	1	167060	+		34575	35434	23775	23825	39718	39718					0.10962758387586291
KRPRGRRKKV	10	Unmodified	_KRPRGRRKKV_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2643127441406	3	427.621456	1279.84254	-0.045124	-1.9296E-05	1.6937	0.00072427	1.6486	0.00070497	427.62292231001487	54.543	0.10293	54.393	54.339	54.442	-0.15036					4	2	2	0	0	0	0.03519	1	5941	5941		10.104	0	1	52237	+		34576	24823	23776	23826	39719	39719					0.2138117755021085
KRPRRRRRRRE	11	Unmodified	_KRPRRRRRRRE_					0	0	0		ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2250671386719	4	406.25972	1621.00977	1.1336	0.00046055	-0.43485	-0.00017666	0.69879	0.00028389	406.2601519061115	26.551	0.1285	26.632	26.543	26.671	0.081291					4	2	2	0	0	0	0.024899	1	1314	1314		5.4129	5.4129	1	12294			34577	12865	23777	23827	39720	39720					0.2241083814767535
KRPRTRRSR	9	Unmodified	_KRPRTRRSR_					0	0	0		ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.92303466796875	3	404.921794	1211.74355	-0.22601	-9.1516E-05	2.0927	0.0008474	1.8667	0.00075588	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	1.018	1	1466	1466		16.717	0	1	42722000			34578	14691	23778	23828	39721	39721					0.14615154585294476
KRPSWSWW	8	Unmodified	_KRPSWSWW_					0	0	0		ENST00000216181.9_1_22:36745085-36745166:-|nuORF	ENST00000216181.9_1_22:36745085-36745166:-|nuORF	ENST00000216181.9_1_22:36745085-36745166:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.2664184570312	2	566.787976	1131.5614	0.15652	8.8713E-05	-2.0207	-0.0011453	-1.8642	-0.0010566	566.7865785148725	69.81	0.41334	69.559	69.236	69.649	-0.25063					15	9	2	0	0	0	0.027866	1	8099	8099		55.504	19.057	1	118740			34579	11156	23779	23829	39722	39722					0.0008800211983270856
KRPWTAET	8	Unmodified	_KRPWTAET_					0	0	0			REV__ENST00000174618.4_1_17:2289655-2289982:-|nuORF	REV__ENST00000174618.4_1_17:2289655-2289982:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.29547119140625	2	494.764166	987.513779	-0.43702	-0.00021622	-0.6952	-0.00034396	-1.1322	-0.00056018	494.76428608201684	35.364	0.27052	35.151	34.963	35.233	-0.21246					9	6	2	0	0	0	0.027866	1	2676	2676		34.173	11.13	1	61476	+		34580	29284	23780	23830	39723	39723					0.019523031289850223
KRQGGLGSL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KRQGGLGSL_					1	0	0			REV__ENST00000262593.9_1_20:53092299-53092329:+|nuORF	REV__ENST00000262593.9_1_20:53092299-53092329:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.27825927734375	2	479.277441	956.540328	-0.71663	-0.00034346	3.8434	0.0018421	3.1268	0.0014986	479.2799764755381	80.941	2.5403	80.965	79.605	82.145	0.023911					119	61	4	0	0	0	0.53979	1	10033	10033		56.721	8.7615	1	1543800	+		34581	29666	23781	23831	39724	39724					0.060319920203255606
KRQKPPGPESD	11	Unmodified	_KRQKPPGPESD_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	620.3355102539062	2	619.828026	1237.6415	0.61918	0.00038379	-1.0316	-0.0006394	-0.41239	-0.00025561	619.8273594302913	109.85	0.35159	109.7	109.55	109.91	-0.14888					35	16	3	0	0	0	1.0238	1	13480	13480		31.53	5.4664	1	598420	+		34582	24975	23782	23832	39725	39725					0.03218398932381206
KRQKPPGPESD	11	Unmodified	_KRQKPPGPESD_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	619.828026	1237.6415	0.73428	0.00045513	-1.0936	-0.00067784	-0.35932	-0.00022271	619.8272872438315	109.67	0.52837	109.67	109.33	109.85	0	-0.026124	-0.001039	NaN	31.53	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1195400	+		34583	24975	23782	23832							0.03218398932381206
KRQKPPGPESD	11	Unmodified	_KRQKPPGPESD_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	619.828026	1237.6415	0.29933	0.00018553	-0.46409	-0.00028766	-0.16476	-0.00010213	619.8276942582237	109.67	0.29385	109.66	109.49	109.79	-0.0094986	-0.034065	-0.0002586	NaN	31.53	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1371900	+		34584	24975	23782	23832							0.03218398932381206
KRQKPPGPESD	11	Unmodified	_KRQKPPGPESD_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	619.828026	1237.6415	-0.63785	-0.00039535	0.21279	0.00013189	-0.42505	-0.00026346	619.8280223695722	109.72	0.29749	109.72	109.57	109.87	0.0059204	0.025507	0.0005805	NaN	31.53	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376200	+		34585	24975	23782	23832							0.03218398932381206
KRQKPPGPESD	11	Unmodified	_KRQKPPGPESD_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	619.828026	1237.6415	-0.12136	-7.522E-05	-0.28044	-0.00017383	-0.4018	-0.00024905	619.8278399893992	109.85	0.34204	109.72	109.55	109.89	-0.12525	0.023585	-3.094E-05	NaN	31.53	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	853390	+		34586	24975	23782	23832							0.03218398932381206
KRQKPPGPESD	11	Unmodified	_KRQKPPGPESD_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	619.828026	1237.6415	-2.1211	-0.0013147	1.6984	0.0010527	-0.42272	-0.00026202	619.8289400510056	109.84	0.30736	109.7	109.59	109.89	-0.13983	0.0071944	0.0024221	NaN	31.53	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589430	+		34587	24975	23782	23832							0.03218398932381206
KRQKPPGPESD	11	Unmodified	_KRQKPPGPESD_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	619.828026	1237.6415	0.61918	0.00038379	-1.0316	-0.0006394	-0.41239	-0.00025561	619.8273594302913	109.85	0.35159	109.7	109.55	109.91	-0.14888	0.0039026	-0.00096208	NaN	31.53	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598420	+		34588	24975	23782	23832							0.03218398932381206
KRQMERIL	8	Unmodified	_KRQMERIL_					0	0	0		nc|ENSG00000105058|Q9Y421-3|FAM32A;ENSG00000105058|ENST00000263384|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	nc|ENSG00000105058|Q9Y421-3|FAM32A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2786865234375	2	537.316043	1072.61753	0.8098	0.00043512	-0.79946	-0.00042956	0.010347	5.5597E-06	537.3155948243647	24.865	0.47793	24.693	24.556	25.034	-0.17151					15	10	2	0	0	0	0.027866	1	1089	1089		64.207	5.4253	1	62376			34589	2630	23783	23833	39726	39726					0.08412886965015787
KRQTWITF	8	Unmodified	_KRQTWITF_					0	0	0		ENST00000498666.5_1_21:46306285-46312915:-|nuORF	ENST00000498666.5_1_21:46306285-46312915:-|nuORF	ENST00000498666.5_1_21:46306285-46312915:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8330078125	2	540.303458	1078.59236	0.81573	0.00044074	1.6659	0.00090011	2.4817	0.0013409	540.8035225035633	19.304	0.39655	19.071	18.829	19.226	-0.23345					10	7	2	0	0	0	0.027866	1	366	366		25.45	0	1	18599			34590	15627	23784	23834	39727	39727					0.05621155434073444
KRQVQQHK	8	Unmodified	_KRQVQQHK_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.307861328125	2	526.309606	1050.60466	2.7488	0.0014467	-3.82	-0.0020105	-1.0713	-0.00056383	526.3074637935289	17.77	0.39187	17.77	17.598	17.99	0					16	7	3	0	0	0	1.0338	1	206	206		31.955	2.8053	1	121330			34591	10259	23785	23835	39728	39728					0.08138191897114666
KRRAMADPE	9	Unmodified	_KRRAMADPE_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.27880859375	2	537.279657	1072.54476	-0.51764	-0.00027812	-1.3633	-0.00073245	-1.8809	-0.0010106	537.2787287221751	24.668	0.56864	24.493	24.252	24.821	-0.17484					29	12	4	0	0	0	0.50848	1	1099	1099		58.782	5.4305	1	771000			34592	7825	23786	23836	39729	39729					0.011391331715913111
KRRGVLLL	8	Unmodified	_KRRGVLLL_					0	0	0			REV__ENST00000265986.10_1_10:94267887-94268517:-|nuORF	REV__ENST00000265986.10_1_10:94267887-94268517:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.8335876464844	2	477.832186	953.649819	1.2397	0.00059239	1.9874	0.00094965	3.2271	0.001542	477.83300080283107	105.72	1.0572	105.72	105.41	106.46	0					78	37	4	0	0	0	1.0574	1	13563	13563		26.796	1.3459	1	749940	+		34593	29754	23787	23837	39730	39730					0.1711404243034167
KRRGVLLL	8	Unmodified	_KRRGVLLL_					0	0	0			REV__ENST00000265986.10_1_10:94267887-94268517:-|nuORF	REV__ENST00000265986.10_1_10:94267887-94268517:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.8342590332031	2	477.832186	953.649819	0.5983	0.00028588	2.3175	0.0011074	2.9158	0.0013933	477.83322218707116	105.71	0.61673	105.54	105.3	105.91	-0.16132					63	22	4	0	0	0	1.0574	2	13151	13151;13162		19.36	1.0356	1	743490	+		34594	29754	23787	23837	39731;39732	39731					0.1711404243034167
KRRIWSFV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KRRIWSFV_					1	0	0		ENST00000393674.6_1_4:175205011-175205404:-|nuORF	ENST00000393674.6_1_4:175205011-175205404:-|nuORF	ENST00000393674.6_1_4:175205011-175205404:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3305053710938	2	567.33255	1132.65055	-1.2298	-0.00069771	-3.9001	-0.0022127	-5.1299	-0.0029104	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	0.94517	1	11405	11405		45.952	10.334	1	17705000			34595	13460	23788	23838	39733	39733					0.08952837079391429
KRRKDRRDRML	11	Unmodified	_KRRKDRRDRML_					0	0	0		ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.9684753417969	3	510.635437	1528.88448	0.22157	0.00011314	-0.9098	-0.00046457	-0.68823	-0.00035143	510.6341188166971	103.2	1.4715	103.03	102.46	103.93	-0.17034					118	35	5	0	0	0	1.1107	2	12834	12816;12834		8.4073	2.0864	1	318810			34596	10191	23789	23839	39734;39735	39735					0.1411936517642971
KRRKSKKG	8	Unmodified	_KRRKSKKG_					0	0	0			REV__ENST00000379251.7_1_X:23801394-23801481:+|nuORF	REV__ENST00000379251.7_1_X:23801394-23801481:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.3007507324219	2	494.330342	986.646131	0.84332	0.00041688	3.3135	0.001638	4.1568	0.0020548	494.33153092727173	96.262	0.32938	96.139	96.066	96.396	-0.12305					9	7	2	0	0	0	0.027866	1	11901	11901		23.042	1.0826	1	125730	+		34597	31428	23790	23840	39736	39736					0.15227372656465832
KRRLARLRW	9	Unmodified	_KRRLARLRW_					0	0	0			REV__nc|ENSG00000132004|Q5XUX1-2|FBXW9	REV__nc|ENSG00000132004|Q5XUX1-2|FBXW9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.900390625	3	418.938785	1253.79453	2.8381	0.001189	4.1551	0.0017408	6.9933	0.0029297	418.94086442205236	18.816	0.39684	18.574	18.374	18.771	-0.24256					12	7	3	0	0	0	0.024541	1	330	330		19.104	2.3861	1	41153	+		34598	36660	23791	23841	39737	39737					0.17778103630166697
KRRLARLRW	9	Unmodified	_KRRLARLRW_					0	0	0			REV__nc|ENSG00000132004|Q5XUX1-2|FBXW9	REV__nc|ENSG00000132004|Q5XUX1-2|FBXW9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	418.938785	1253.79453	0.63444	0.00026579	5.2344	0.0021929	5.8689	0.0024587	418.9417814006496	18.742	0.39606	18.586	18.396	18.792	-0.15637	-0.0060867	-0.0001293	NaN	19.104	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44883	+		34599	36660	23791	23841							0.17778103630166697
KRRLLERRGFL	11	Unmodified	_KRRLLERRGFL_					0	0	0		ENSG00000143319|ENST00000368219|ISG20L2	ENSG00000143319|ENST00000368219|ISG20L2	ENSG00000143319|ENST00000368219|ISG20L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2968444824219	3	481.972155	1442.89463	0.42019	0.00020252	-0.70348	-0.00033906	-0.28329	-0.00013654	482.30713914774464	46.208	0.11318	46.112	46.039	46.152	-0.096649					4	2	2	0	0	0	0.024801	1	4433	4433		23.378	9.87	1	81951			34600	5631	23792	23842	39738	39738					0.1909029617329452
KRRMKQLY	8	Unmodified	_KRRMKQLY_					0	0	0			REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7939453125	2	561.83186	1121.64917	-0.47985	-0.0002696	-4.2072	-0.0023637	-4.6871	-0.0026333	561.8294236561734	52.613	0.46387	52.355	52.1	52.564	-0.25839					20	11	2	0	0	0	0.027866	1	5454	5454		62.978	13.537	1	239370	+		34601	20496	23793	23843	39739	39739					0.09320879718984543
KRRQRYRRQNR	11	Unmodified	_KRRQRYRRQNR_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9231262207031	4	404.991178	1615.9356	-1.0965	-0.00044409	-1.8039	-0.00073057	-2.9005	-0.0011747	405.24162938438866	26.358	0.16513	26.195	26.069	26.234	-0.16331					6	4	2	0	0	0	0.024856	1	1319	1319		5.6988	0	1	74982	+		34602	24032	23794	23844	39740	39740					0.15227450265479092
KRRREIDHR	9	Unmodified	_KRRREIDHR_					0	0	0			REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.369140625	2	633.368518	1264.72248	0.38898	0.00024637	0.52856	0.00033478	0.91755	0.00058115	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	0.91321	1	11928	11928		31.53	0	1	3178500	+		34603	26798	23795	23845	39741	39741					0.1007114448577795
KRRRQKMQKDR	11	Unmodified	_KRRRQKMQKDR_					0	0	0		SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.9691162109375	3	510.635437	1528.88448	0.41252	0.00021065	-2.8262	-0.0014432	-2.4137	-0.0012325	510.6338732089937	101.96	1.4935	101.83	101	102.49	-0.12931					100	34	4	0	0	0	1.0875	1	12656	12656		14.779	8.4579	1	164910			34604	37903	23796	23846	39742	39742					0.14119365176406973
KRRRQKMQKDR	11	Unmodified	_KRRRQKMQKDR_					0	0	0		SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.6334228515625	3	510.635437	1528.88448	0.040541	2.0702E-05	-2.5039	-0.0012786	-2.4634	-0.0012579	510.63400900848177	101.96	1.5186	101.83	100.98	102.5	-0.12666					101	36	4	0	0	0	1.0978	1	12664	12664		11.932	1.8285	1	138840			34605	37903	23796	23846	39743	39743					0.14119365176406973
KRRRRRRCIMA	11	Unmodified	_KRRRRRRCIMA_					0	0	0			REV__nc|ENSG00000254402|Q50LG9|LRRC24	REV__nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.30584716796875	3	501.301623	1500.88304	0.10653	5.3401E-05	2.0509	0.0010281	2.1574	0.0010815	501.3026310594907	105.98	0.85508	105.86	105.44	106.3	-0.1238					44	30	2	0	0	0	1.1135	1	13195	13195		6.3209	0	1	159380	+		34606	37171	23797	23847	39744	39744					0.15263452606700412
KRRRRRRRNSR	11	Unmodified	_KRRRRRRRNSR_					0	0	0			REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.78466796875	3	533.003734	1595.98937	-0.98496	-0.00052498	0.6455	0.00034406	-0.33945	-0.00018093	533.339045538023	45.693	0.34055	45.541	45.379	45.719	-0.15156					15	9	3	0	0	0	0.024888	1	4419	4419		6.001	5.6605	1	278300	+		34607	37487	23798	23848	39745	39745					0.21521667487877494
KRRRRSARRES	11	Unmodified	_KRRRRSARRES_					0	0	0			REV__nc|ENSG00000150510|Q86V42-3|FAM124A	REV__nc|ENSG00000150510|Q86V42-3|FAM124A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.96240234375	3	486.625929	1456.85596	0.17242	8.3903E-05	2.4064	0.001171	2.5788	0.0012549	486.96155003209356	105.06	0.38761	105.06	104.89	105.28	0					23	12	2	0	0	0	1.096	1	13488	13488		12.433	1.8709	1	255630	+		34608	36779	23799	23849	39746	39746					0.1458038359148759
KRRRWLPSPN	10	Unmodified	_KRRRWLPSPN_					0	0	0		ENST00000483551.6_1_15:69082366-69082516:-|nuORF	ENST00000483551.6_1_15:69082366-69082516:-|nuORF	ENST00000483551.6_1_15:69082366-69082516:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2569274902344	3	437.258184	1308.75272	0.65097	0.00028464	-2.4836	-0.001086	-1.8326	-0.00080134	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	1.1195	1	12449	12449		20.837	2.3061	1	1147200			34609	15286	23800	23850	39747	39747					0.11069503150974924
KRRRWLPSPN	10	Unmodified	_KRRRWLPSPN_					0	0	0		ENST00000483551.6_1_15:69082366-69082516:-|nuORF	ENST00000483551.6_1_15:69082366-69082516:-|nuORF	ENST00000483551.6_1_15:69082366-69082516:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.25665283203125	3	437.258184	1308.75272	0.70758	0.0003094	-2.6209	-0.001146	-1.9133	-0.0008366	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.1161	1	12183	12183		30.569	2.9249	1	1350500			34610	15286	23800	23850	39748	39748					0.11069503150974924
KRRTVLTP	8	Unmodified	_KRRTVLTP_					0	0	0			REV__ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant	REV__ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.26129150390625	2	485.811451	969.608348	-1.9579	-0.00095118	1.1404	0.00055401	-0.81754	-0.00039717	485.812090427124	38.206	0.72254	38.234	37.849	38.572	0.027279					34	20	2	0	0	0	0.027866	1	3150	3150		42.396	3.59	1	278090	+		34611	19079	23801	23851	39749	39749					0.12232861670975126
KRRVRAAA	8	Unmodified	_KRRVRAAA_					0	0	0			REV__ENST00000471903.2_1:120837853-120854583:+|nuORF	REV__ENST00000471903.2_1:120837853-120854583:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2669982910156	2	464.301585	926.588616	0.101	4.6894E-05	0.96406	0.00044762	1.0651	0.00049451	464.3018952040895	42.858	0.216	42.718	42.521	42.737	-0.13929					7	5	2	0	0	0	0.027866	1	3957	3957		50.025	30.028	1	52663	+		34612	33187	23802	23852	39750	39750					0.122385304508839
KRRWRRGY	8	Unmodified	_KRRWRRGY_					0	0	0			REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.343017578125	2	589.344315	1176.67408	-1.3212	-0.00077864	-1.065	-0.00062763	-2.3862	-0.0014063	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0239	2	11188	11188;11200		33.516	3.1979	1	5175100	+		34613	29026	23803	23853	39751;39752	39751					0.09280695636562086
KRRYRDLL	8	Unmodified	_KRRYRDLL_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB;SOWAHB|p.E83Q|1|0.21|ENSG00000186212|chr4:76897603-76897603|C/G|missense_variant	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3380126953125	2	560.340907	1118.66726	0.38121	0.00021361	-1.7774	-0.00099595	-1.3962	-0.00078234	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	1.0009	1	12712	12712		37.159	4.3467	1	13153000			34614	9530	23804	23854	39753	39753					0.11267337965318802
KRSARPEL	8	Unmodified	_KRSARPEL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.78533935546875	2	478.785433	955.556313	0.41235	0.00019743	-0.4463	-0.00021368	-0.033952	-1.6256E-05	478.78517028501756	91.36	2.0991	91.221	90.863	92.962	-0.13941					79	49	4	0	0	0	0.99042	1	11218	11218		38.806	3.1879	1	2115600			34615	1428	23805	23855	39754	39754					0.07675698257230579
KRSDFLGFSGY	11	Unmodified	_KRSDFLGFSGY_					0	0	0		ENST00000342584.3_1_5:471735-471993:-|nuORF	ENST00000342584.3_1_5:471735-471993:-|nuORF	ENST00000342584.3_1_5:471735-471993:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.5792541503906	3	426.215539	1275.62479	0.25038	0.00010672	-3.3294	-0.001419	-3.079	-0.0013123	426.21389978011393	35.961	0.40097	35.744	35.614	36.015	-0.21661					20	11	2	0	0	0	0.02473	1	2777	2777		39.873	13.81	1	244620			34616	12510	23806	23856	39755	39755					-0.002001019535555315
KRSDFLGFSGY	11	Unmodified	_KRSDFLGFSGY_					0	0	0		ENST00000342584.3_1_5:471735-471993:-|nuORF	ENST00000342584.3_1_5:471735-471993:-|nuORF	ENST00000342584.3_1_5:471735-471993:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	426.215539	1275.62479	-1.1561	-0.00049277	-1.7485	-0.00074523	-2.9046	-0.001238	426.2147151956246	35.786	0.61985	35.744	35.447	36.067	-0.042458	-0.064374	0.00064755	NaN	39.873	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735310			34617	12510	23806	23856							-0.002001019535555315
KRSDQKVQM	9	Unmodified	_KRSDQKVQM_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2987060546875	2	560.30059	1118.58663	-0.94645	-0.0005303	-2.342	-0.0013122	-3.2884	-0.0018425	560.2991492849267	28.487	2.1205	28.487	26.741	28.862	0					121	53	4	0	0	0	0.64897	1	1652	1652		49.536	3.5841	1	1341400			34618	8810	23807	23857	39756	39756					0.03207688860129565
KRSDQKVQM	9	Unmodified	_KRSDQKVQM_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	560.30059	1118.58663	-0.52158	-0.00029224	-2.8384	-0.0015904	-3.36	-0.0018826	560.2988348363675	28.106	1.5819	28.187	27.245	28.826	0.080811	-0.17428	-0.00029781	NaN	49.536	101	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1354700			34619	8810	23807	23857							0.03207688860129565
KRSGQVLEV	9	Unmodified	_KRSGQVLEV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2273254394531	2	508.298373	1014.58219	-0.79293	-0.00040305	0.063903	3.2482E-05	-0.72903	-0.00037057	508.29827307223917	30.523	0.58441	30.344	30.083	30.667	-0.17818					36	13	4	0	0	0	0.024017	1	1962	1962		75.043	30.927	1	784590			34620	5962	23808	23858	39757	39757					0.07548547708859132
KRSGQVLEV	9	Unmodified	_KRSGQVLEV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.298373	1014.58219	-1.3342	-0.0006782	0.97547	0.00049583	-0.35878	-0.00018237	508.2987049552449	30.678	0.82208	30.678	30.057	30.879	0	0.17061	0.00084584	NaN	75.043	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362950			34621	5962	23808	23858							0.07548547708859132
KRSGQVLEV	9	Unmodified	_KRSGQVLEV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.298373	1014.58219	-0.56244	-0.00028589	0.54314	0.00027608	-0.019295	-9.8075E-06	508.2982905319778	30.676	0.78825	30.685	30.123	30.911	0.0086708	0.17736	0.00040633	NaN	75.043	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387350			34622	5962	23808	23858							0.07548547708859132
KRSGQVLEV	9	Unmodified	_KRSGQVLEV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.298373	1014.58219	-0.87727	-0.00044592	0.33356	0.00016955	-0.54371	-0.00027637	508.29828917362573	30.401	0.6217	30.475	30.045	30.667	0.074314	-0.032558	0.00019327	NaN	75.043	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337730			34623	5962	23808	23858							0.07548547708859132
KRSIKERL	8	Unmodified	_KRSIKERL_					0	0	0		ENSG00000185774|ENST00000382152|KCNIP4;KCNIP4|p.M38I|1|0.27|ENSG00000185774|chr4:20882657-20882657|C/G|missense_variant	ENSG00000185774|ENST00000382152|KCNIP4	ENSG00000185774|ENST00000382152|KCNIP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3114013671875	2	515.330008	1028.64546	0.76508	0.00039427	-0.91064	-0.00046928	-0.14556	-7.501E-05	515.3298899364431	19.978	0.29614	19.754	19.582	19.878	-0.22344					7	5	2	0	0	0	0.027866	1	471	471		45.972	0	1	8367.3			34624	9473	23809	23859	39758	39758					0.1322853321673847
KRSKTKSH	8	Unmodified	_KRSKTKSH_					0	0	0			REV__ENSG00000182004|ENST00000414487|SNRPE	REV__ENSG00000182004|ENST00000414487|SNRPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2908935546875	2	486.290882	970.567212	-0.99169	-0.00048225	0.98434	0.00047868	-0.0073464	-3.5725E-06	486.29130015665504	25.29	0.81767	25.256	24.948	25.765	-0.034395					55	19	4	0	0	0	0.6536	1	1184	1184		71.296	2.5089	1	4519300	+		34625	27442	23810	23860	39759	39759					0.08075100631515397
KRSKTKSH	8	Unmodified	_KRSKTKSH_					0	0	0			REV__ENSG00000182004|ENST00000414487|SNRPE	REV__ENSG00000182004|ENST00000414487|SNRPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.290771484375	2	486.290882	970.567212	-0.20209	-9.8273E-05	-0.1548	-7.5277E-05	-0.35689	-0.00017355	486.2908179982032	25.155	0.74506	25.235	24.961	25.706	0.08009					32	17	2	0	0	0	0.80469	1	1127	1127		58.782	0	1	4891200	+		34626	27442	23810	23860	39760	39760					0.08075100631515397
KRSLPHGG	8	Unmodified	_KRSLPHGG_					0	0	0			REV__ENST00000396987.7_1_8:41478885-41479125:+|nuORF	REV__ENST00000396987.7_1_8:41478885-41479125:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.248046875	2	426.245944	850.477334	0.84051	0.00035826	-0.076989	-3.2816E-05	0.76352	0.00032545	426.2457364112024	84.25	1.1492	84.047	83.567	84.716	-0.20329					69	26	5	0	0	0	1.0574	1	10168	10168		25.45	8.0852	1	832130	+		34627	31758	23811	23861	39761	39761					0.046114710229517186
KRSLPHSA	8	Unmodified	_KRSLPHSA_					0	0	0			REV__ENSG00000088756|ENST00000383472|ARHGAP28	REV__ENSG00000088756|ENST00000383472|ARHGAP28	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2589111328125	2	448.259051	894.503549	0.20031	8.9789E-05	-0.47015	-0.00021075	-0.26985	-0.00012096	448.25872211244354	89.189	1.6752	89.051	88.482	90.157	-0.13761					97	39	4	0	0	0	1.0338	1	10878	10878		31.955	6.5047	1	8594700	+		34628	20818	23812	23862	39762	39762					0.05207740194418875
KRSRDARRLKE	11	Unmodified	_KRSRDARRLKE_					0	0	0		ENSG00000108924|ENST00000226067|HLF;nc|ENSG00000108924|Q16534-2|HLF;ENST00000570962.1_1_17:53345105-53398237:+|nuORF;nc|ENSG00000167074|Q10587-2|TEF;ENSG00000167074|ENST00000266304|TEF;ENSG00000105516|ENST00000222122|DBP;ENST00000594723.1_1_19:49134096-49134354:-|nuORF	ENSG00000108924|ENST00000226067|HLF;ENSG00000105516|ENST00000222122|DBP;ENST00000594723.1_1_19:49134096-49134354:-|nuORF	ENSG00000108924|ENST00000226067|HLF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.283935546875	3	472.283169	1413.82768	0.72989	0.00034471	0.43929	0.00020747	1.1692	0.00055219	472.2834001172857	100.54	0.46875	100.41	100.14	100.61	-0.12503					27	13	3	0	0	0	1.0739	1	12466	12466		18.531	0	1	176500			34629	2946;2687;17411	23813	23863	39763	39763					0.13731640891523966
KRSRSGYKKSS	11	Unmodified	_KRSRSGYKKSS_					0	0	0		ENSG00000160588|ENST00000278949|MPZL3;nc|ENSG00000160588|Q6UWV2-2|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	642.3631591796875	2	642.362567	1282.71058	-1.7888	-0.001149	1.5832	0.001017	-0.20554	-0.00013203	642.363276727703	110.73	0.52884	110.61	110.51	111.04	-0.12525					31	17	2	0	0	0	0.79111	2	13608	13598;13608		58.23	17.471	1	6429600			34630	6824	23814	23864	39764;39765	39765					0.08053482951959268
KRSRSGYKKSS	11	Unmodified	_KRSRSGYKKSS_					0	0	0		ENSG00000160588|ENST00000278949|MPZL3;nc|ENSG00000160588|Q6UWV2-2|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	ENSG00000160588|ENST00000278949|MPZL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	642.362567	1282.71058	1.2082	0.00077608	-2.3379	-0.0015018	-1.1297	-0.00072571	642.3621844059868	110.55	0.80205	110.54	110.28	111.08	-0.011299	-0.032365	-0.0038336	NaN	58.23	57	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11547000			34631	6824	23814	23864							0.08053482951959268
KRSSSPVLR	9	Unmodified	_KRSSSPVLR_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.309326171875	2	515.311815	1028.60908	0.44954	0.00023165	-1.3948	-0.00071877	-0.94528	-0.00048712	515.3111810356185	20.157	1.0323	19.934	19.68	20.712	-0.22344					57	20	5	0	0	0	0.82115	1	523	523		37.812	5.8567	1	7077600	+		34632	22918	23815	23865	39766	39766					0.09591656320048969
KRSTELLEPNL	11	Unmodified	_KRSTELLEPNL_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.9127502441406	3	433.913748	1298.71942	-0.69342	-0.00030088	-0.88934	-0.0003859	-1.5828	-0.00068678	433.9131221716381	21.025	1.0195	21.025	20.704	21.723	0					79	20	5	0	0	0	1.0341	1	619	619		29.245	0.66827	1	1030200	+		34633	22635	23816	23866	39767	39767					0.08200411797770357
KRSVHKKELN	10	Unmodified	_KRSVHKKELN_					0	0	0		DLEC1|p.Q244H|1|0.28|ENSG00000008226|chr3:38062227-38062227|G/C|missense_variant	DLEC1|p.Q244H|1|0.28|ENSG00000008226|chr3:38062227-38062227|G/C|missense_variant	DLEC1|p.Q244H|1|0.28|ENSG00000008226|chr3:38062227-38062227|G/C|missense_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	619.86962890625	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.772	1	91.633	91.133	92.133	-0.13942								0	0	0	0.74119	1	11248	11248		34.173	1.3601	1				34634	642	23817	23867	39768	39768					0.11614974819940471
KRTATWKI	8	Unmodified	_KRTATWKI_					0	0	0		ENST00000532108.1_1_11:4623360-4626734:-|nuORF;ENSG00000167333|ENST00000300747|TRIM68	ENST00000532108.1_1_11:4623360-4626734:-|nuORF	ENST00000532108.1_1_11:4623360-4626734:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7972717285156	2	502.306001	1002.59745	1.14	0.00057263	-1.496	-0.00075146	-0.356	-0.00017882	502.305124242273	19.531	0.34694	19.297	19.126	19.473	-0.23345					13	6	4	0	0	0	0.027866	1	418	418		30.504	4.9296	1	163040			34635	7675	23818	23868	39769	39769					0.09625459296705685
KRTICLVVVC	10	Unmodified	_KRTICLVVVC_					0	0	0			REV__ENSG00000144339|ENST00000272771|TMEFF2	REV__ENSG00000144339|ENST00000272771|TMEFF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3305053710938	2	567.330304	1132.64606	-1.2298	-0.00069771	0.05851	3.3195E-05	-1.1713	-0.00066451	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.0781	1	11429	11429		35.618	4.0885	1	17705000	+		34636	24326	23819	23869	39770	39770					0.08503868549951221
KRTICLVVVC	10	Unmodified	_KRTICLVVVC_					0	0	0			REV__ENSG00000144339|ENST00000272771|TMEFF2	REV__ENSG00000144339|ENST00000272771|TMEFF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.329833984375	2	567.330304	1132.64606	0.14889	8.447E-05	-1.0486	-0.0005949	-0.8997	-0.00051043	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.1329	1	10862	10862		27.882	4.8398	1	5699400	+		34637	24326	23819	23869	39771	39771					0.08503868549951221
KRTKDEIV	8	Unmodified	_KRTKDEIV_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7936706542969	2	494.792924	987.571294	0.20023	9.9072E-05	0.42068	0.00020815	0.62091	0.00030722	494.7930320456022	19.072	0.59388	18.911	18.54	19.134	-0.16079					32	11	6	0	0	0	1.0106	1	380	380		35.618	2.1027	1	458880			34638	1991	23820	23870	39772	39772					0.07701145334556259
KRTQQPSL	8	Unmodified	_KRTQQPSL_					0	0	0			REV__ENST00000238831.8_1_2:32503207-32515566:+|nuORF	REV__ENST00000238831.8_1_2:32503207-32515566:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.27801513671875	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.87148	1	10222	10222		53.351	3.9099	1	4947400	+		34639	29442	23821	23871	39773	39773					0.06031992020314192
KRTVRMPHQL	10	Unmodified	_KRTVRMPHQL_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-2|ALDH1L1;nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.5818786621094	3	422.580158	1264.71864	0.051062	2.1578E-05	4.1793	0.0017661	4.2304	0.0017877	422.58183891194597	96.092	3.0594	95.935	94.749	97.808	-0.15646					209	69	4	0	0	0	1.1088	1	11866	11866		36.318	12.086	1	593240			34640	5782	23822	23872	39774	39774					0.09687338667731638
KRTWPLEV	8	Unmodified	_KRTWPLEV_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8154296875	2	514.798009	1027.58147	-0.67588	-0.00034794	-4.0348	-0.0020771	-4.7107	-0.0024251	515.2979126834485	44.797	0.34618	44.834	44.612	44.959	0.0369					14	9	2	0	0	0	0.027866	1	4231	4231		31.955	1.6371	1	166610			34641	2154	23823	23873	39775	39775					0.06877753059802671
KRVGLMVRERI	11	Unmodified	_KRVGLMVRERI_					0	0	0			REV__ENST00000236192.11_1_1:171673255-171673306:-|nuORF	REV__ENST00000236192.11_1_1:171673255-171673306:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.2830810546875	3	452.946729	1355.81836	0.24421	0.00011061	3.6188	0.0016391	3.8631	0.0017498	452.94824343813883	106.29	0.5282	106.16	105.9	106.43	-0.1238					65	22	4	0	0	0	1.0674	1	13220	13220		20.315	4.3944	1	927680	+		34642	29432	23824	23874	39776	39776					0.1546815628166769
KRVLVSVI	8	Unmodified	_KRVLVSVI_					0	0	0		nc|ENSG00000165244|Q7RTV3-2|ZNF367;ENSG00000165244|ENST00000375256|ZNF367	nc|ENSG00000165244|Q7RTV3-2|ZNF367	nc|ENSG00000165244|Q7RTV3-2|ZNF367	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.31298828125	2	457.313295	912.612037	-0.59237	-0.0002709	-0.099151	-4.5343E-05	-0.69152	-0.00031624	457.3131968046075	44.332	2.3209	44.332	44.022	46.343	0					141	67	5	0	0	0	0.78609	1	4244	4244		60.294	6.9425	1	17509000			34643	7385	23825	23875	39777	39777					0.15223531444860328
KRVNTKRSSR	10	Unmodified	_KRVNTKRSSR_					0	0	0		ENST00000539420.1_1_11:113286028-113288807:-|nuORF;ENST00000540600.5_1_11:113285027-113346393:-|nuORF;nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2	ENST00000539420.1_1_11:113286028-113288807:-|nuORF	ENST00000539420.1_1_11:113286028-113288807:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.8876037597656	3	411.249577	1230.7269	-0.6153	-0.00025304	2.9573	0.0012162	2.342	0.00096316	411.25045927600564	27.839	0.99444	27.671	27.013	28.008	-0.16816					42	23	3	0	0	0	0.03519	1	1537	1537		23.378	5.5448	1	163950			34644	6080	23826	23876	39778	39778					0.12076608908705566
KRVQRSKAKH	10	Unmodified	_KRVQRSKAKH_					0	0	0			REV__ENST00000415623.1_1_10:70184604-70184751:+|nuORF	REV__ENST00000415623.1_1_10:70184604-70184751:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.26910400390625	3	413.258184	1236.75272	-1.1386	-0.00047054	-3.865	-0.0015972	-5.0036	-0.0020678	413.25683034891074	28.561	0.98586	28.316	27.635	28.621	-0.24524					38	23	3	0	0	0	0.03519	1	1655	1655		47.96	18.409	1	236840	+		34645	32060	23827	23877	39779	39779					0.1438150315098028
KRWLGRWRRKR	11	Unmodified	_KRWLGRWRRKR_					0	0	0		ENSG00000283093|ENST00000634648|CENPVL2;ENSG00000223591|ENST00000602548|CENPVL1	ENSG00000283093|ENST00000634648|CENPVL2	ENSG00000283093|ENST00000634648|CENPVL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8052978515625	3	533.330676	1596.9702	-0.57552	-0.00030694	-4.2922	-0.0022891	-4.8677	-0.0025961	533.6619806728862	44.977	0.10797	45.02	44.966	45.074	0.043877					4	2	2	0	0	0	0.024898	1	4282	4282		1.2319	0	1	71218			34646	10642	23828	23878	39780	39780					0.19559318144206372
KRWSQGPK	8	Unmodified	_KRWSQGPK_					0	0	0		ENST00000487290.5_1_3:121366185-121366260:-|nuORF	ENST00000487290.5_1_3:121366185-121366260:-|nuORF	ENST00000487290.5_1_3:121366185-121366260:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2955322265625	2	493.780151	985.545748	-0.3736	-0.00018448	0.41786	0.00020633	0.044259	2.1854E-05	493.78021864081995	35.478	0.51149	35.265	35	35.511	-0.21246					18	12	2	0	0	0	0.027866	1	2695	2695		37.159	5.6293	1	133200			34647	15363	23829	23879	39781	39781					0.05239715602806427
KRYKEAQKI	9	Unmodified	_KRYKEAQKI_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3480834960938	2	582.348397	1162.68224	0.56465	0.00032882	-0.65601	-0.00038203	-0.091366	-5.3207E-05	582.3479028751376	18.625	0.74184	18.469	18.247	18.989	-0.15637					30	14	4	0	0	0	0.56934	1	326	326		54.776	10.399	1	333350			34648	2889	23830	23880	39782	39782					0.10740785042662537
KRYKEAQKI	9	Unmodified	_KRYKEAQKI_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.3482666015625	2	582.348397	1162.68224	2.1578	0.0012566	-2.3526	-0.0013701	-0.19482	-0.00011346	582.346952285642	18.718	0.84281	18.476	18.274	19.117	-0.24256					35	16	4	0	0	0	0.42604	1	307	307		64.207	7.4862	1	252040			34649	2889	23830	23880	39783	39783					0.10740785042662537
KRYKEAQKI	9	Unmodified	_KRYKEAQKI_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	582.348397	1162.68224	1.4137	0.00082325	-1.9249	-0.0011209	-0.51119	-0.00029769	582.3472147738987	18.288	0.78579	18.288	18.087	18.873	0	-0.17693	-0.0010863	NaN	64.207	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107690			34650	2889	23830	23880							0.10740785042662537
KRYKEAQKI	9	Unmodified	_KRYKEAQKI_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	582.348397	1162.68224	-0.43752	-0.00025479	0.45994	0.00026785	0.022424	1.3058E-05	582.3485311566254	18.687	0.59348	18.484	18.262	18.856	-0.20371	0.019313	0.0016913	NaN	64.207	26	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322730			34651	2889	23830	23880							0.10740785042662537
KSAAGRKKAFN	11	Unmodified	_KSAAGRKKAFN_					0	0	0		nc|ENSG00000168126|Q8NHA6|OR2W6P	nc|ENSG00000168126|Q8NHA6|OR2W6P	nc|ENSG00000168126|Q8NHA6|OR2W6P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3434448242188	2	589.343646	1176.67274	-0.46523	-0.00027418	-0.41075	-0.00024208	-0.87599	-0.00051626	589.3432591363344	95.498	0.94806	95.361	95.112	96.06	-0.13689					59	21	4	0	0	0	1.0183	1	11764	11764		32.751	8.2313	1	845610			34652	18489	23831	23881	39784	39784					0.09147016757128767
KSAAGRKKAFN	11	Unmodified	_KSAAGRKKAFN_					0	0	0		nc|ENSG00000168126|Q8NHA6|OR2W6P	nc|ENSG00000168126|Q8NHA6|OR2W6P	nc|ENSG00000168126|Q8NHA6|OR2W6P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.342529296875	2	589.343646	1176.67274	-0.89938	-0.00053004	-0.0073699	-4.3434E-06	-0.90675	-0.00053439	589.3435287738987	95.622	0.99408	95.471	95.142	96.136	-0.15186					57	22	3	0	0	0	1.0429	1	11787	11787		27.047	2.5281	1	942320			34653	18489	23831	23881	39785	39785					0.09147016757128767
KSAAKESLY	9	Unmodified	_KSAAKESLY_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7716369628906	2	498.771657	995.528761	-0.27952	-0.00013942	-0.086323	-4.3056E-05	-0.36585	-0.00018247	498.7713832829951	24.611	0.63182	24.396	24.177	24.809	-0.2151					40	14	4	0	0	0	0.12914	2	1104	1093;1104		104.06	27.283	1	1545600			34654	10245	23832	23882	39786;39787	39787					0.03081750206331435
KSAAKESLY	9	Unmodified	_KSAAKESLY_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.77215576171875	2	498.771657	995.528761	-0.17735	-8.8459E-05	-0.078107	-3.8958E-05	-0.25546	-0.00012742	498.77140262009397	24.45	0.63478	24.275	23.963	24.598	-0.17484					38	14	4	0	0	0	0.14087	2	1060	1060;1072		101.46	7.7223	1	1481500			34655	10245	23832	23882	39788;39789	39788					0.03081750206331435
KSAAKESLY	9	Unmodified	_KSAAKESLY_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	498.771657	995.528761	1.8025	0.00089903	-2.0808	-0.0010379	-0.27834	-0.00013883	498.77031789802	24.484	0.74038	24.304	23.938	24.678	-0.18089	-0.021087	-0.0014673	NaN	104.06	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385900			34656	10245	23832	23882							0.03081750206331435
KSAAKRKG	8	Unmodified	_KSAAKRKG_					0	0	0			REV__nc|ENSG00000111247|Q96B01-3|RAD51AP1	REV__nc|ENSG00000111247|Q96B01-3|RAD51AP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2583312988281	2	423.269419	844.524284	-0.34112	-0.00014438	0.36355	0.00015388	0.022428	9.4933E-06	423.27031635844696	42.037	0.19625	41.905	41.789	41.985	-0.13219					7	5	2	0	0	0	0.027866	1	3811	3811		6.3127	4.8478	1	101090	+		34657	21901	23833	23883	39790	39790					0.09580330574090112
KSADRWRS	8	Unmodified	_KSADRWRS_					0	0	0		ENSG00000141068|ENST00000644974|KSR1	ENSG00000141068|ENST00000644974|KSR1	ENSG00000141068|ENST00000644974|KSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.29364013671875	2	503.264865	1004.51518	-0.59645	-0.00030017	-0.23816	-0.00011986	-0.8346	-0.00042003	503.26481908598134	53.469	0.25647	53.564	53.444	53.7	0.095669					12	6	2	0	0	0	0.027866	1	5731	5731		29.17	10.067	1	158550			34658	5468	23834	23884	39791	39791					0.013099372177521218
KSAEINTESD	10	Unmodified	_KSAEINTESD_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7821044921875	2	547.254025	1092.4935	-0.66274	-0.00036269	-2.7986	-0.0015315	-3.4613	-0.0018942	547.7543688008523	76.076	0.46155	75.803	75.542	76.004	-0.27266					16	11	2	0	0	0	0.03519	1	8973	8973		18.262	0	1	102360	+		34659	27410	23835	23885	39792	39792					-0.04904957112125885
KSAERLFLL	9	Unmodified	_KSAERLFLL_					0	0	0		ENSG00000138050|ENST00000505747|THUMPD2;nc|ENSG00000138050|Q9BTF0-2|THUMPD2	ENSG00000138050|ENST00000505747|THUMPD2	ENSG00000138050|ENST00000505747|THUMPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8267822265625	2	538.826766	1075.63898	-0.4532	-0.0002442	-0.069249	-3.7313E-05	-0.52245	-0.00028151	538.826664240235	55.111	1.017	54.881	54.601	55.618	-0.23087					71	28	3	0	0	0	0.70156	1	5880	5880		45.972	3.108	1	7408700			34660	5196	23836	23886	39793	39793					0.1041859526535518
KSAFFKRV	8	Unmodified	_KSAFFKRV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.79583740234375	2	491.795269	981.575986	-0.15145	-7.4485E-05	1.313	0.00064572	1.1615	0.00057124	491.7958080246407	47.771	1.5597	47.495	46.483	48.043	-0.27598					128	42	5	0	0	0	1.0574	1	4741	4741		23.042	1.3402	1	5590000			34661	18480	23837	23887	39794	39794					0.08446074267999393
KSAFFKRV	8	Unmodified	_KSAFFKRV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.79583740234375	2	491.795269	981.575986	0.18124	8.9134E-05	0.94681	0.00046563	1.128	0.00055477	491.7954877774719	47.616	1.6243	47.429	46.316	47.94	-0.18684					123	44	5	0	0	0	1.043	1	4711	4711		30.504	2.2494	1	5640400			34662	18480	23837	23887	39795	39795					0.08446074267999393
KSAGKRLL	8	Unmodified	_KSAGKRLL_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7747802734375	2	436.787444	871.560336	-0.30938	-0.00013513	-1.9036	-0.00083149	-2.213	-0.00096662	436.7875226046827	89.94	0.20153	89.94	89.774	89.975	0					6	4	2	0	0	0	0.027866	1	11339	11339		26.693	5.746	1	135590			34663	10040	23838	23888	39796	39796					0.11941787750936328
KSAGKRLL	8	Unmodified	_KSAGKRLL_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7747497558594	2	436.787444	871.560336	0.29737	0.00012989	2.0668	0.00090276	2.3642	0.0010326	436.7879482834376	90.077	0.5659	90.06	89.751	90.317	-0.016708					27	13	3	0	0	0	0.027866	1	11385	11385		21.96	14.767	1	344120			34664	10040	23838	23888	39797	39797					0.11941787750936328
KSAGKRLL	8	Unmodified	_KSAGKRLL_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7750244140625	2	436.787444	871.560336	-0.54907	-0.00023983	0.97648	0.00042651	0.42741	0.00018669	436.78728362753805	90.195	0.65427	90.07	89.762	90.416	-0.12512					31	15	3	0	0	0	0.027866	1	11004	11004		34.173	8.7224	1	245900			34665	10040	23838	23888	39798	39798					0.11941787750936328
KSAHTPVIISV	11	Unmodified	_KSAHTPVIISV_					0	0	0		ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.3172607421875	2	576.342781	1150.67101	0.17641	0.00010167	2.901	0.001672	3.0774	0.0017736	576.3443894652268	71.215	1.1748	70.943	70.658	71.833	-0.27185					41	27	2	0	0	0	0.024736	1	8411	8411		22.58	2.0978	1	217240			34666	9186	23839	23889	39799	39799					0.10169962948521061
KSAHTPVIISV	11	Unmodified	_KSAHTPVIISV_					0	0	0		ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.342781	1150.67101	-0.32841	-0.00018928	3.7441	0.0021579	3.4157	0.0019686	576.3448283177843	71.156	1.0392	70.899	70.564	71.603	-0.25713	0.037423	0.00062409	NaN	22.58	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243720			34667	9186	23839	23889							0.10169962948521061
KSAHTPVIISV	11	Unmodified	_KSAHTPVIISV_					0	0	0		ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	576.342781	1150.67101	0.37563	0.00021649	2.8912	0.0016663	3.2669	0.0018828	576.3443070304096	70.956	0.88786	70.741	70.563	71.451	-0.21424	-0.1197	-0.00035898	NaN	22.58	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244490			34668	9186	23839	23889							0.10169962948521061
KSAILFIRA	9	Unmodified	_KSAILFIRA_					0	0	0			REV__ENST00000469159.1_1_1:160326803-160328058:+|nuORF	REV__ENST00000469159.1_1_1:160326803-160328058:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.63433837890625	2	509.824027	1017.6335	-0.57646	-0.00029389	-3.7016	-0.0018872	-4.2781	-0.0021811	509.8221495085969	103.24	0.59841	103.24	102.96	103.56	0					33	13	4	0	0	0	0.02435	1	13222	13222		14.137	5.4434	1	208890	+		34669	25483	23840	23890	39800	39800					0.12538916473545214
KSAILFIRA	9	Unmodified	_KSAILFIRA_					0	0	0			REV__ENST00000469159.1_1_1:160326803-160328058:+|nuORF	REV__ENST00000469159.1_1_1:160326803-160328058:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.824027	1017.6335	-0.12454	-6.3495E-05	-4.3295	-0.0022073	-4.454	-0.0022708	509.8219334535914	103.14	0.42786	103.15	103.01	103.44	0.0054245	-0.064248	-0.00015439	NaN	19.997	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148390	+		34670	25483	23840	23890							0.12538916473545214
KSAKKQLAGT	10	Unmodified	_KSAKKQLAGT_					0	0	0			REV__ENSG00000170613|ENST00000302938|GARIN3	REV__ENSG00000170613|ENST00000302938|GARIN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.31396484375	2	516.314023	1030.61349	0.62813	0.00032431	-1.6446	-0.00084913	-1.0165	-0.00052482	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	1.1246	1	12267	12267		23.523	0	1	32395000	+		34671	26491	23841	23891	39801	39801					0.09941120742928433
KSAKKQLAGT	10	Unmodified	_KSAKKQLAGT_					0	0	0			REV__ENSG00000170613|ENST00000302938|GARIN3	REV__ENSG00000170613|ENST00000302938|GARIN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.31396484375	2	516.314023	1030.61349	1.2467	0.00064367	-2.2809	-0.0011777	-1.0343	-0.00053401	516.3127200758097	98.004	2.6622	97.879	97.018	99.68	-0.12414					214	65	6	0	0	0	1.0719	1	12111	12111		36.447	3.6343	1	30440000	+		34672	26491	23841	23891	39802	39802					0.09941120742928433
KSAKKQLAGT	10	Unmodified	_KSAKKQLAGT_					0	0	0			REV__ENSG00000170613|ENST00000302938|GARIN3	REV__ENSG00000170613|ENST00000302938|GARIN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3138427734375	2	516.314023	1030.61349	-0.060536	-3.1256E-05	-1.0547	-0.00054456	-1.1152	-0.00057582	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	1.0074	1	12203	12203		45.022	4.4496	1	29455000	+		34673	26491	23841	23891	39803	39803					0.09941120742928433
KSAKSVTS	8	Unmodified	_KSAKSVTS_					0	0	0		ENSG00000183831|ENST00000333279|ANKRD45;nc|ENSG00000285777|Q5TZF3-1|ANKRD45	ENSG00000183831|ENST00000333279|ANKRD45	ENSG00000183831|ENST00000333279|ANKRD45	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2326354980469	2	404.232168	806.449782	0.88841	0.00035912	-1.1234	-0.00045413	-0.23502	-9.5003E-05	404.23126867146937	81.701	1.1843	81.472	80.98	82.165	-0.2289					64	27	3	0	0	0	1.0574	1	9831	9831		21.96	0.25755	1	1092000			34674	9282	23842	23892	39804	39804					0.03881522972062612
KSAKVIFALD	10	Unmodified	_KSAKVIFALD_					0	0	0		nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5;nc|ENSG00000176927|A4FU69-5|EFCAB5;nc|ENSG00000176927|A4FU69-2|EFCAB5;nc|ENSG00000176927|A4FU69-4|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7813110351562	2	546.326599	1090.63865	-0.41875	-0.00022877	-4.0718	-0.0022246	-4.4906	-0.0024533	546.3258976490538	75.533	0.27759	75.274	75.2	75.477	-0.25865					9	6	2	0	0	0	0.03519	1	8946	8946		19.997	4.355	1	50095			34675	8688	23843	23893	39805	39805					0.09695175545516577
KSAQPADGW	9	Unmodified	_KSAQPADGW_					0	0	0		nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1	nc|ENSG00000131979|P30793-3|GCH1	nc|ENSG00000131979|P30793-3|GCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7894592285156	2	480.232699	958.450845	0.31756	0.0001525	0.46325	0.00022247	0.78081	0.00037497	480.23255248821994	33.752	0.91255	33.526	33.118	34.031	-0.22654					40	22	3	0	0	0	0.024367	1	2438	2438		44.377	19.858	1	448050			34676	4565	23844	23894	39806	39806					-0.03004262659055712
KSARFISL	8	Unmodified	_KSARFISL_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.2799072265625	2	461.279452	920.544351	0.22538	0.00010396	-0.37639	-0.00017362	-0.15101	-6.9659E-05	461.27917608156173	42.587	0.5341	42.587	42.289	42.823	0					38	14	3	0	0	0	0.97794	1	3922	3922		40.778	0	1	6756400	+		34677	23772	23845	23895	39807	39807					0.08090081514046688
KSAVIPPL	8	Unmodified	_KSAVIPPL_					0	0	0			REV__ENSG00000215817|ENST00000651890|ZC3H11B	REV__ENSG00000215817|ENST00000651890|ZC3H11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.20892333984375	2	412.765646	823.516739	-0.17867	-7.375E-05	4.1649	0.0017191	3.9862	0.0016454	412.7671674532593	41.55	1.1793	41.415	40.488	41.668	-0.13553					47	30	3	0	0	0	0.027866	1	3583	3583		26.796	0	1	143850	+		34678	28813	23846	23896	39808	39808					0.09792178253815109
KSAVLELFAI	10	Unmodified	_KSAVLELFAI_					0	0	0		ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7821044921875	2	545.828975	1089.6434	-0.69012	-0.00037669	-0.59645	-0.00032556	-1.2866	-0.00070225	545.8287572429969	75.828	0.70153	75.555	75.423	76.125	-0.27266					27	17	3	0	0	0	0.03519	1	8973	8973		25.574	8.106	1	137790			34679	15907	23847	23897	39809	39809					0.10216059688286805
KSAVRHQLVLD	11	Unmodified	_KSAVRHQLVLD_					0	0	0		nc|ENSG00000221949|Q8N7H1|LINC01465	nc|ENSG00000221949|Q8N7H1|LINC01465	nc|ENSG00000221949|Q8N7H1|LINC01465	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.58209228515625	3	422.582333	1264.72517	-0.39406	-0.00016652	-0.47915	-0.00020248	-0.8732	-0.000369	422.5820497034196	95.914	2.933	95.914	95.007	97.94	0					172	67	3	0	0	0	1.0499	1	12239	12239		22.781	7.4483	1	719610			34680	18729	23848	23898	39810	39810					0.1033955510006308
KSCAKWKL	8	Unmodified	_KSCAKWKL_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.27716064453125	2	482.275855	962.537157	-0.3553	-0.00017135	2.769	0.0013354	2.4137	0.0011641	482.2771442889716	24.675	0.78823	24.675	24.385	25.173	0					44	17	4	0	0	0	0.68164	1	1119	1119		68.787	5.4806	1	1684900	+		34681	28824	23849	23899	39811	39811					0.05439025641965145
KSCEHVVCP	9	Unmodified	_KSCEHVVCP_					0	0	0		nc|ENSG00000070404|O95633-2|FSTL3;ENSG00000070404|ENST00000166139|FSTL3	nc|ENSG00000070404|O95633-2|FSTL3	nc|ENSG00000070404|O95633-2|FSTL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2312316894531	2	501.230787	1000.44702	-0.78391	-0.00039292	-0.13808	-6.9211E-05	-0.922	-0.00046213	501.23097603286163	38.473	1.4963	38.39	37.503	38.999	-0.082516					123	41	5	0	0	0	0.75397	1	3211	3211		42.396	0.96952	1	3964400			34682	1425	23850	23900	39812	39812					-0.05318391748767226
KSCETTVTSW	10	Unmodified	_KSCETTVTSW_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.2347412109375	2	571.263339	1140.51212	-0.19616	-0.00011206	-3.25	-0.0018566	-3.4461	-0.0019686	571.2613743581896	69.365	0.53802	69.143	68.852	69.39	-0.22245					31	12	3	0	0	0	0.03519	1	8064	8064		47.657	1.6851	1	367750	+		34683	25017	23851	23901	39813	39813					-0.052511187419213456
KSCKGFQTY	9	Unmodified	_KSCKGFQTY_					0	0	0		nc|ENSG00000119977|Q6NUS6-2|TCTN3	nc|ENSG00000119977|Q6NUS6-2|TCTN3	nc|ENSG00000119977|Q6NUS6-2|TCTN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2381591796875	2	531.257859	1060.50117	-0.20937	-0.00011123	-0.60312	-0.00032041	-0.81249	-0.00043164	531.7585222802854	39.501	1.4263	39.275	38.736	40.163	-0.2257					46	37	2	0	0	0	0.024427	1	3455	3455		34.173	8.7224	1	155820			34684	18215	23852	23902	39814	39814					-0.02666476325543954
KSCKLASLLT	10	Unmodified	_KSCKLASLLT_					0	0	0			REV__ENST00000360057.7_1_7:144320275-144380050:-|nuORF	REV__ENST00000360057.7_1_7:144320275-144380050:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.23828125	2	532.312635	1062.61072	-0.60345	-0.00032122	-3.3777	-0.001798	-3.9812	-0.0021192	532.3107831825903	40.076	0.64048	39.926	39.513	40.153	-0.1497					26	16	3	0	0	0	0.03519	1	3440	3440		41.427	11.109	1	246140	+		34685	30895	23853	23903	39815	39815					0.08191529293776512
KSCNQGDYGPA	11	Unmodified	_KSCNQGDYGPA_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2500610351562	2	570.242938	1138.47132	0.76402	0.00043567	0.61248	0.00034926	1.3765	0.00078494	570.242496348956	59.661	0.30827	59.484	59.321	59.629	-0.1761					11	7	2	0	0	0	0.024768	1	6619	6619		37.508	8.3381	1	96768	+		34686	28588	23854	23904	39816	39816					-0.09237460061535785
KSCPRPASV	9	Unmodified	_KSCPRPASV_					0	0	0		CON__Q14532;ENSG00000108759|ENST00000225899|KRT32	CON__Q14532	CON__Q14532	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.27099609375	2	472.752744	943.490935	-0.9705	-0.0004588	0.14812	7.0022E-05	-0.82238	-0.00038878	472.75131043449437	48.56	0.68114	48.284	48.004	48.685	-0.27598					45	18	4	0	0	0	0.024405	1	4785	4785		35.618	0	1	1091200		+	34687	538	23855	23905	39817	39817					0.016929607398765256
KSCQLSLQKM	10	Unmodified	_KSCQLSLQKM_					0	0	0			REV__ENSG00000131370|ENST00000383791|SH3BP5	REV__ENSG00000131370|ENST00000383791|SH3BP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2857055664062	2	583.307026	1164.5995	-0.92701	-0.00054073	1.5731	0.0009176	0.64609	0.00037687	583.3054047143503	55.415	0.43268	55.184	54.855	55.288	-0.23087					26	12	3	0	0	0	0.03519	1	5943	5943		104.06	31.814	1	160050	+		34688	23201	23856	23906	39818	39818					0.023783839279758467
KSCQSFISW	9	Unmodified	_KSCQSFISW_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1;ENSG00000157557|ENST00000360938|ETS2	nc|ENSG00000134954|P14921-2|ETS1;ENSG00000157557|ENST00000360938|ETS2	nc|ENSG00000134954|P14921-2|ETS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.271240234375	2	543.257859	1084.50117	-1.1626	-0.00063161	-0.9102	-0.00049447	-2.0728	-0.0011261	543.258967893403	55.492	0.5281	55.277	55.037	55.565	-0.21551					26	13	3	0	0	0	0.018983	1	5904	5904		116.9	14.13	1	402810			34689	4845;6606	23857	23907	39819	39819					-0.03770476325553318
KSCRDYYI	8	Unmodified	_KSCRDYYI_					0	0	0		TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2689819335938	2	524.250034	1046.48552	-1.1057	-0.00057968	0.56675	0.00029712	-0.53897	-0.00028256	524.2503919705287	35.017	0.33139	34.995	34.828	35.159	-0.021763					17	8	3	0	0	0	0.027866	1	2672	2672		33.516	6.8227	1	795410			34690	2559	23858	23908	39820	39820					-0.03586762842610369
KSCRPCTNPE	10	Unmodified	_KSCRPCTNPE_					0	0	0			REV__ENST00000551738.1_1_14:105945069-105945470:+|nuORF	REV__ENST00000551738.1_1_14:105945069-105945470:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8294067382812	2	567.755158	1133.49576	-1.1803	-0.00067011	1.8279	0.0010378	0.64757	0.00036766	567.755953537466	65.265	0.78125	65.063	64.859	65.64	-0.20254					26	18	2	0	0	0	0.03519	1	7453	7453		35.152	2.3396	1	103760	+		34691	27510	23859	23909	39821	39821					-0.06564523179667958
KSCSSVYDL	9	Unmodified	_KSCSSVYDL_					0	0	0			REV__ENST00000309334.5_2_10:63819008-63819050:+|nuORF	REV__ENST00000309334.5_2_10:63819008-63819050:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7999267578125	2	501.23405	1000.45355	-0.88592	-0.00044405	-2.8422	-0.0014246	-3.7281	-0.0018687	501.2323945427326	44.988	0.68486	44.777	44.436	45.121	-0.21109					42	17	3	0	0	0	0.024477	1	4187	4187		20.947	0	1	1179500	+		34692	30160	23860	23910	39822	39822					-0.04666175316413046
KSDDEDEEEE	10	Unmodified	_KSDDEDEEEE_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.7984619140625	2	612.722952	1223.43135	-0.80669	-0.00049428	2.4246	0.0014856	1.6179	0.00099131	612.7243015275706	59.433	0.52952	59.236	58.969	59.499	-0.19742					25	12	3	0	0	0	0.03519	1	6553	6553		19.997	0	1	348650	+		34693	26868	23861	23911	39823	39823					-0.17142773041814507
KSDEKSIKL	9	Unmodified	_KSDEKSIKL_					0	0	0			REV__ENSG00000109536|ENST00000226798|FRG1	REV__ENSG00000109536|ENST00000226798|FRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.27099609375	2	524.305864	1046.59717	-1.7401	-0.00091235	1.7637	0.00092471	0.023582	1.2364E-05	524.3066300864106	30.777	1.3626	30.777	29.895	31.257	0					75	32	4	0	0	0	0.024381	1	1880	1880		21.96	0	1	1236300	+		34694	21799	23862	23912	39824	39824					0.07573994786184812
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.234619140625	2	487.234907	972.455261	-0.67164	-0.00032725	0.13964	6.8036E-05	-0.532	-0.00025921	487.23487567445545	48.105	0.87865	48.007	47.743	48.621	-0.097553					65	23	4	0	0	0	0.12602	3	4765	4738;4750;4765		104.75	27.334	1	7156900			34695	2647	23863	23913	39825;39826;39827	39827					-0.03206798236146824
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.23492431640625	2	487.234907	972.455261	-0.96994	-0.00047259	0.48183	0.00023476	-0.48811	-0.00023782	487.23503672509014	48.408	0.8343	48.132	47.851	48.685	-0.27598					74	22	5	0	0	0	0.15366	4	4780	4768;4780;4793;4805		98.629	30.012	1	6903600			34696	2647	23863	23913	39828;39829;39830;39831	39829					-0.03206798236146824
KSDGSFIGY	9	Unmodified	_KSDGSFIGY_					0	0	0		nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000537834.5_1_19:40745726-40771198:-|nuORF	nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2340087890625	2	487.234907	972.455261	0.33764	0.00016451	-0.83953	-0.00040905	-0.50189	-0.00024454	487.23437712111917	48.223	0.94812	48.036	47.749	48.698	-0.18684					66	25	4	0	0	0	0.15366	3	4767	4755;4767;4782		98.629	27.392	1	6231800			34697	2647	23863	23913	39832;39833;39834	39833					-0.03206798236146824
KSDKFVSV	8	Unmodified	_KSDKFVSV_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.7810974121094	2	455.255643	908.496732	-0.72796	-0.00033141	1.2677	0.00057713	0.53974	0.00024572	455.2560333961519	44.803	0.31528	44.704	44.513	44.828	-0.099449					10	7	2	0	0	0	0.027866	1	4213	4213		19.104	0	1	60047	+		34698	20514	23864	23914	39835	39835					0.03882382523192973
KSDKKASKEL	10	Unmodified	_KSDKKASKEL_					0	0	0			REV__ENSG00000182621|ENST00000338037|PLCB1	REV__ENSG00000182621|ENST00000338037|PLCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3294067382812	2	567.32987	1132.64519	-1.2298	-0.00069771	0.82385	0.00046739	-0.40596	-0.00023031	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.1081	1	11357	11357		31.634	0.10446	1	17705000	+		34699	27498	23865	23915	39836	39836					0.08417068706239661
KSDKMASLL	9	Unmodified	_KSDKMASLL_					0	0	0			REV__ENST00000531568.1_2_11:26495614-26495653:+|nuORF	REV__ENST00000531568.1_2_11:26495614-26495653:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.23876953125	2	496.775885	991.537217	-0.43128	-0.00021425	-2.9973	-0.001489	-3.4285	-0.0017032	496.7742804466353	31.095	0.52867	30.91	30.533	31.062	-0.18503					18	12	2	0	0	0	0.024389	1	2050	2050		28.081	4.5588	1	125630	+		34700	34560	23866	23916	39837	39837					0.04110980851305612
KSDKWLFW	8	Unmodified	_KSDKWLFW_					0	0	0			REV__ENST00000561042.5_1_15:100340094-100347099:-|nuORF	REV__ENST00000561042.5_1_15:100340094-100347099:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.3262939453125	2	555.292559	1108.57057	-0.10913	-6.0599E-05	-2.2829	-0.0012677	-2.392	-0.0013283	555.2907528496323	54.914	0.43287	54.683	54.494	54.927	-0.23087					20	11	3	0	0	0	0.027866	1	5839	5839		29.15	1.2673	1	166200	+		34701	35165	23867	23917	39838	39838					0.02062350685491765
KSDKWLFW	8	Unmodified	_KSDKWLFW_					0	0	0			REV__ENST00000561042.5_1_15:100340094-100347099:-|nuORF	REV__ENST00000561042.5_1_15:100340094-100347099:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.3265991210938	2	555.292559	1108.57057	0.51027	0.00028335	-3.4679	-0.0019257	-2.9576	-0.0016423	555.7919873519339	54.907	0.43584	54.701	54.395	54.831	-0.20613					20	10	4	0	0	0	0.027866	1	5826	5826		24.203	0	1	348780	+		34702	35165	23867	23917	39839	39839					0.02062350685491765
KSDLLILDF	9	Unmodified	_KSDLLILDF_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3394165039062	2	532.305332	1062.59611	0.43414	0.0002311	0.27541	0.0001466	0.70955	0.0003777	532.3047946224343	58.807	0.88021	58.566	58.216	59.096	-0.24165					30	21	3	0	0	0	0.024397	1	6511	6511		31.53	3.6476	1	1079200			34703	4326	23868	23918	39840	39840					0.06731780417271693
KSDPFLVFY	9	Unmodified	_KSDPFLVFY_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8;ENST00000551855.1_1_12:39120300-39161507:-|nuORF;nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9;ENSG00000124772|ENST00000244751|CPNE5	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.29248046875	2	558.292225	1114.5699	-0.20003	-0.00011167	-0.22641	-0.0001264	-0.42643	-0.00023807	558.2917215195405	76.265	1.1796	76.097	75.514	76.693	-0.16854					58	28	3	0	0	0	0.64897	1	9036	9036		49.536	7.1399	1	1502200			34704	5298	23869	23919	39841	39841					0.017195112458011863
KSDRSWKK	8	Unmodified	_KSDRSWKK_					0	0	0			REV__nc|ENSG00000100271|O95922-4|TTLL1	REV__nc|ENSG00000100271|O95922-4|TTLL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.3013305664062	2	517.790715	1033.56688	-0.040626	-2.1036E-05	-0.51551	-0.00026693	-0.55614	-0.00028796	517.7901804967739	30.336	0.7213	30.186	29.835	30.556	-0.14952					31	16	3	0	0	0	0.027866	1	1873	1873		27.882	4.8455	1	546480	+		34705	21077	23870	23920	39842	39842					0.051436809116466975
KSDRYTVQL	9	Unmodified	_KSDRYTVQL_					0	0	0			REV__ENSG00000153292|ENST00000371253|ADGRF1	REV__ENSG00000153292|ENST00000371253|ADGRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.7728881835938	2	555.301113	1108.58767	-0.61201	-0.00033985	0.90257	0.0005012	0.29056	0.00016135	555.3015121116684	37.376	0.35654	37.167	37.037	37.393	-0.2092					14	8	2	0	0	0	0.024495	1	2992	2992		19.997	0	1	146320	+		34706	24898	23871	23921	39843	39843					0.037722265006550515
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		ENST00000467114.2_1_2:153535806-153549567:-|nuORF;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	ENST00000467114.2_1_2:153535806-153549567:-|nuORF	ENST00000467114.2_1_2:153535806-153549567:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.2849731445312	2	604.285128	1206.5557	-0.94487	-0.00057097	0.22773	0.00013761	-0.71714	-0.00043336	604.285241483412	30.507	1.1268	30.263	29.905	31.031	-0.24415					100	26	5	0	0	0	0.0074023	5	1967	1934;1943;1955;1967;1979		173.39	84.652	1	9194600			34707	9884	23872	23922	39844;39845;39846;39847;39848	39847					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		ENST00000467114.2_1_2:153535806-153549567:-|nuORF;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	ENST00000467114.2_1_2:153535806-153549567:-|nuORF	ENST00000467114.2_1_2:153535806-153549567:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.2853393554688	2	604.285128	1206.5557	-1.1083	-0.00066973	0.41077	0.00024822	-0.69754	-0.00042151	604.2853530222594	30.362	1.2063	30.184	29.824	31.03	-0.17818					104	28	5	0	0	0	0.029455	5	1930	1909;1918;1930;1942;1956		155.58	70.669	1	7875500			34708	9884	23872	23922	39849;39850;39851;39852;39853	39851					-0.039311859731242293
KSDSGKPYYY	10	Unmodified	_KSDSGKPYYY_					0	0	0		ENST00000467114.2_1_2:153535806-153549567:-|nuORF;nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	ENST00000467114.2_1_2:153535806-153549567:-|nuORF	ENST00000467114.2_1_2:153535806-153549567:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.2852783203125	2	604.285128	1206.5557	-0.31268	-0.00018895	-0.44186	-0.00026701	-0.75454	-0.00045596	604.2848170595723	30.349	1.2922	30.199	29.835	31.127	-0.14952					116	30	5	0	0	0	0.00010576	5	1923	1890;1900;1912;1923;1936		204.79	106.16	1	7896600			34709	9884	23872	23922	39854;39855;39856;39857;39858	39857					-0.039311859731242293
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.782958984375	2	561.782556	1121.55056	-0.10931	-6.141E-05	-0.20647	-0.00011599	-0.31578	-0.0001774	561.7824421438413	46.932	2.1539	46.836	45.923	48.077	-0.096653					178	58	5	0	0	0	0.015752	6	4570	4536;4547;4558;4570;4583;4596		158.07	64.879	1	24691000			34710	1458	23873	23923	39859;39860;39861;39862;39863;39864	39862					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.7830200195312	2	561.782556	1121.55056	0.12857	7.2226E-05	-0.34278	-0.00019257	-0.21422	-0.00012034	561.782379167508	47.226	2.227	46.957	46.036	48.263	-0.26939					168	60	5	0	0	0	0.034407	6	4561	4561;4570;4581;4593;4605;4617		138.06	55.44	1	25599000			34711	1458	23873	23923	39865;39866;39867;39868;39869;39870	39865					-0.005354450451022785
KSDVHLNFY	9	Unmodified	_KSDVHLNFY_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.7825927734375	2	561.782556	1121.55056	-0.49648	-0.00027891	0.22227	0.00012487	-0.27421	-0.00015405	561.7826928146108	47.026	2.3886	46.832	45.938	48.327	-0.19387					184	65	5	0	0	0	0.015752	7	4593	4545;4557;4569;4581;4593;4609;4621		158.07	64.879	1	24966000			34712	1458	23873	23923	39871;39872;39873;39874;39875;39876;39877	39875					-0.005354450451022785
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.2772827148438	2	573.277303	1144.54005	-0.59942	-0.00034363	0.46825	0.00026844	-0.13116	-7.5193E-05	573.2775358250469	26.131	1.1153	25.895	25.677	26.792	-0.23603					57	29	4	0	0	0	0.013442	2	1313	1302;1313		204.42	83.803	1	6799600			34713	1819	23874	23924	39878;39879	39879					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.2777099609375	2	573.277303	1144.54005	-0.29767	-0.00017065	0.26442	0.00015158	-0.033256	-1.9065E-05	573.2773702222995	25.926	1.0038	25.755	25.499	26.503	-0.17078					71	27	4	0	0	0	0.0158	2	1275	1265;1275		209.21	96.198	1	5559000			34714	1819	23874	23924	39880;39881	39881					-0.026434724901946538
KSDVNKEYY	9	Unmodified	_KSDVNKEYY_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.2769165039062	2	573.277303	1144.54005	-1.2016	-0.00068884	0.55756	0.00031963	-0.64402	-0.0003692	573.2775565211551	25.943	1.0787	25.779	25.5	26.579	-0.16331					61	29	4	0	0	0	0.014067	2	1252	1240;1252		190.62	94.432	1	5659900			34715	1819	23874	23924	39882;39883	39883					-0.026434724901946538
KSEAPETPM	9	Unmodified	_KSEAPETPM_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.7766418457031	2	495.23405	988.453547	-0.43396	-0.00021491	0.10177	5.0401E-05	-0.33218	-0.00016451	495.2340714033516	28.121	0.59383	27.969	27.689	28.283	-0.15195					23	14	2	0	0	0	0.024262	1	1557	1557		68.485	0	1	184250			34716	1153	23875	23925	39884	39884					-0.04114175316396995
KSEAVAQLW	9	Unmodified	_KSEAVAQLW_					0	0	0		nc|ENSG00000135373|Q9NZC4-3|EHF;nc|ENSG00000135373|Q9NZC4-2|EHF;ENSG00000135373|ENST00000257831|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2800903320312	2	516.279649	1030.54475	-0.083978	-4.3356E-05	-0.30745	-0.00015873	-0.39143	-0.00020209	516.2795014912862	55.374	2.0056	55.143	54.638	56.643	-0.23087					101	54	4	0	0	0	0.03666	4	5910	5910;5921;5955;5967		136.27	20.114	1	28861000			34717	18297	23876	23926	39885;39886;39887;39888	39885					0.030694564432451443
KSEEALSTLL	10	Unmodified	_KSEEALSTLL_					0	0	0			REV__ENSG00000106571|ENST00000395925|GLI3	REV__ENSG00000106571|ENST00000395925|GLI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2454833984375	2	545.803154	1089.59175	-0.34945	-0.00019073	1.5333	0.00083686	1.1838	0.00064613	545.8038902276779	40.07	0.64118	39.845	39.581	40.222	-0.225					37	16	3	0	0	0	0.03519	1	3486	3486		39.253	6.4404	1	1102200	+		34718	21628	23877	23927	39889	39889					0.05054271203721328
KSEHLWNL	8	Unmodified	_KSEHLWNL_					0	0	0			REV__ENSG00000053254|ENST00000557258|FOXN3	REV__ENSG00000053254|ENST00000557258|FOXN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3031005859375	2	513.771991	1025.52943	0.16887	8.6763E-05	0.086285	4.4331E-05	0.25516	0.00013109	513.7720683302616	37.245	0.33888	37.052	36.851	37.19	-0.193					12	8	2	0	0	0	0.027866	1	2995	2995		24.519	0	1	111040	+		34719	20178	23878	23928	39890	39890					0.01768589646030705
KSEHSSIGLLL	11	Unmodified	_KSEHSSIGLLL_					0	0	0			REV__ENST00000550735.6_1_12:112336740-112336830:+|nuORF	REV__ENST00000550735.6_1_12:112336740-112336830:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.3060302734375	2	592.337695	1182.66084	-1.0829	-0.00064145	3.6203	0.0021445	2.5374	0.001503	592.3396912139897	63.04	0.48584	62.856	62.671	63.157	-0.18386					26	11	3	0	0	0	0.024756	1	7133	7133		29.17	1.0886	1	523570	+		34720	34916	23879	23929	39891	39891					0.07681355223280661
KSEKIPKES	9	Unmodified	_KSEKIPKES_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.830078125	2	523.298039	1044.58152	0.029306	1.5336E-05	-1.4937	-0.00078166	-1.4644	-0.00076633	523.2969689722714	21.664	0.38655	21.473	21.275	21.662	-0.19072					11	7	2	0	0	0	0.024477	1	673	673		20.947	9.4359	1	29973			34721	3684	23880	23930	39892	39892					0.06101708269147821
KSEKIPKES	9	Unmodified	_KSEKIPKES_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.298039	1044.58152	0.11165	5.8427E-05	-1.8738	-0.00098055	-1.7621	-0.00092212	523.2963059689614	21.508	0.47831	21.331	21.162	21.64	-0.17721	-0.065139	-0.0012327	NaN	20.947	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35998			34722	3684	23880	23930							0.06101708269147821
KSEKIPKES	9	Unmodified	_KSEKIPKES_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.298039	1044.58152	-1.0754	-0.00056276	0.79501	0.00041603	-0.28041	-0.00014674	523.2983967886202	21.597	0.43609	21.384	21.216	21.652	-0.2128	-0.011872	0.0015605	NaN	20.947	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52960			34723	3684	23880	23930							0.06101708269147821
KSEKNRIW	8	Unmodified	_KSEKNRIW_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3052368164062	2	530.79854	1059.58253	-0.78635	-0.00041739	-0.52631	-0.00027937	-1.3127	-0.00069676	530.7985757079856	48.264	0.39669	48.166	47.929	48.326	-0.097553					16	10	2	0	0	0	0.027866	1	4742	4742		25.45	0	1	425250	+		34724	22204	23881	23931	39893	39893					0.055119674287197995
KSENKMKNL	9	Unmodified	_KSENKMKNL_					0	0	0		ENST00000443070.5_1_2:74002080-74005468:-|nuORF	ENST00000443070.5_1_2:74002080-74005468:-|nuORF	ENST00000443070.5_1_2:74002080-74005468:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.78173828125	2	546.297516	1090.58048	-0.4394	-0.00024004	2.512	0.0013723	2.0726	0.0011322	546.8011682004923	75.531	0.32286	75.272	75.075	75.398	-0.25866					11	7	2	0	0	0	0.024495	1	8924	8924		34.173	6.2903	1	106200			34725	14394	23882	23932	39894	39894					0.038811706285969194
KSEQDHIMY	9	Unmodified	_KSEQDHIMY_					0	0	0			REV__ENSG00000104549|ENST00000265896|SQLE	REV__ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8027954101562	2	575.763506	1149.51246	-0.49297	-0.00028383	-1.5627	-0.00089972	-2.0556	-0.0011836	575.7626253031257	53.52	0.39301	53.384	53.171	53.564	-0.13617					20	10	3	0	0	0	0.024495	1	5598	5598		34.173	0	1	251290	+		34726	21451	23883	23933	39895	39895					-0.0563169902206937
KSEQDHIMY	9	Unmodified	_KSEQDHIMY_					0	0	0			REV__ENSG00000104549|ENST00000265896|SQLE	REV__ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8031616210938	2	575.763506	1149.51246	-0.43824	-0.00025232	-1.8992	-0.0010935	-2.3375	-0.0013458	575.7624035079934	53.696	0.41145	53.45	53.275	53.687	-0.2453					18	11	2	0	0	0	0.024466	1	5617	5617		31.53	15.057	1	283890	+		34727	21451	23883	23933	39896	39896					-0.0563169902206937
KSETDSPGDP	10	Unmodified	_KSETDSPGDP_					0	0	0			REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2793579101562	2	516.727643	1031.44073	-0.16651	-8.6041E-05	-0.9123	-0.00047141	-1.0788	-0.00055745	516.7275150880487	55.377	0.19736	55.162	55.004	55.201	-0.21551					8	5	2	0	0	0	0.03519	1	5914	5914		58.23	0	1	92503	+		34728	22040	23884	23934	39897	39897					-0.07372915174937589
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MSMS	OPSCC_40_ClassI_Rep-1	4	535.7798461914062	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.452	1	63.224	62.724	63.724	-0.22773								0	0	0	0.26342	1	7169	7169		70.816	4.3869	1				34729	10499	23885	23935	39898	39898					0.0124203672337444
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MSMS	OPSCC_40_ClassI_Rep-1	4	535.7793579101562	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.588	1	63.361	62.861	63.861	-0.22773								0	0	0	0.15405	1	7190	7190		80.455	9.1589	1				34730	10499	23885	23935	39899	39899					0.0124203672337444
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MSMS	OPSCC_40_ClassI_Rep-2	5	535.7799682617188	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.384	1	63.2	62.7	63.7	-0.18386								0	0	0	0.52533	1	7165	7165		49.536	5.4192	1				34731	10499	23885	23935	39900	39900					0.0124203672337444
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MSMS	OPSCC_40_ClassI_Rep-2	5	535.7798461914062	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.462	1	63.27	62.77	63.77	-0.19243								0	0	0	0.10825	1	7177	7177		90.601	19.305	1				34732	10499	23885	23935	39901	39901					0.0124203672337444
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MSMS	OPSCC_40_ClassI_Rep-2	5	535.7793579101562	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.529	1	63.337	62.837	63.837	-0.19243								0	0	0	0.31227	1	7187	7187		67.494	1.5962	1				34733	10499	23885	23935	39902	39902					0.0124203672337444
KSFADINLY	9	Unmodified	_KSFADINLY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7794189453125	2	535.779482	1069.54441	-0.15067	-8.0725E-05	-0.082716	-4.4317E-05	-0.23338	-0.00012504	535.7793588840555	63.625	1.2809	63.367	62.792	64.073	-0.25824					80	32	4	0	0	0	0.16539	2	7191	7179;7191		96.034	21.779	1	7271200			34734	10499	23885	23935	39903;39904	39904					0.0124203672337444
KSFAIGLSV	9	Unmodified	_KSFAIGLSV_					0	0	0			REV__ENSG00000175787|ENST00000395395|ZNF169	REV__ENSG00000175787|ENST00000395395|ZNF169	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.7330627441406	2	461.273835	920.533118	-0.21918	-0.0001011	-0.19581	-9.0323E-05	-0.415	-0.00019143	461.27377091076687	24.718	0.48039	24.544	24.296	24.777	-0.17484					13	10	2	0	0	0	0.024447	1	1069	1069		19.104	0	1	33395	+		34735	26972	23886	23936	39905	39905					0.06967259419911898
KSFAIGVQF	9	Unmodified	_KSFAIGVQF_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.779296875	2	498.779285	995.544017	-0.42634	-0.00021265	0.24906	0.00012423	-0.17728	-8.8424E-05	498.7793897510982	65.388	0.90604	65.147	64.883	65.789	-0.24145					39	21	3	0	0	0	0.22379	1	7469	7469		85.862	23.754	1	1406700			34736	8488	23887	23937	39906	39906					0.04606661794196043
KSFAIGVQF	9	Unmodified	_KSFAIGVQF_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7792053222656	2	498.779285	995.544017	-1.4049	-0.00070074	1.2183	0.00060766	-0.1866	-9.3073E-05	498.77987109780344	65.367	0.82255	65.164	64.859	65.681	-0.20254					39	19	4	0	0	0	0.03666	1	7465	7465		136.27	54.028	1	1362200			34737	8488	23887	23937	39907	39907					0.04606661794196043
KSFAIGVQF	9	Unmodified	_KSFAIGVQF_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.77935791015625	2	498.779285	995.544017	-0.75991	-0.00037903	0.80408	0.00040106	0.044165	2.2028E-05	498.7795791978257	65.419	0.98232	65.168	64.823	65.806	-0.25112					40	23	3	0	0	0	0.053401	2	7453	7453;7463		127.46	52.945	1	1315100			34738	8488	23887	23937	39908;39909	39908					0.04606661794196043
KSFAKARNI	9	Unmodified	_KSFAKARNI_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2738647460938	2	517.808908	1033.60326	-0.63196	-0.00032724	-3.172	-0.0016425	-3.8039	-0.0019697	517.8070421268642	45.6	0.94374	45.644	45.18	46.123	0.043877					48	27	2	0	0	0	0.024344	1	4386	4386		23.523	0	1	653220			34739	1870;18103	23888	23938	39910	39910					0.08780557808381673
KSFDFHFGF	9	Unmodified	_KSFDFHFGF_					0	0	0		nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000109103|ENST00000335765|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.266357421875	2	566.266542	1130.51853	-0.49638	-0.00028108	0.8839	0.00050052	0.38752	0.00021944	566.2668628959	69.74	0.8745	69.472	69.206	70.08	-0.26725					62	20	4	0	0	0	0.014013	3	8097	8086;8097;8109		166.78	92.618	1	2885200			34740	2962	23889	23939	39911;39912;39913	39912					-0.04150812728244091
KSFDFHFGF	9	Unmodified	_KSFDFHFGF_					0	0	0		nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000109103|ENST00000335765|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.2667846679688	2	566.266542	1130.51853	0.15756	8.9223E-05	0.16927	9.5851E-05	0.32683	0.00018507	566.2664506994205	69.67	0.94716	69.419	69.156	70.103	-0.25063					64	22	4	0	0	0	0.013995	3	8089	8089;8099;8112		181.81	107.64	1	2837100			34741	2962	23889	23939	39914;39915;39916	39914					-0.04150812728244091
KSFDFHFGF	9	Unmodified	_KSFDFHFGF_					0	0	0		nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000109103|ENST00000335765|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.2666625976562	2	566.266542	1130.51853	-0.11282	-6.3884E-05	0.46948	0.00026585	0.35667	0.00020197	566.2666184378879	69.645	1.0209	69.422	69.145	70.165	-0.22246					71	24	4	0	0	0	0.013094	2	8086	8074;8086		171.38	100.99	1	2617100			34742	2962	23889	23939	39917;39918	39918					-0.04150812728244091
KSFDSPSSF	9	Unmodified	_KSFDSPSSF_					0	0	0		nc|ENSG00000197044|Q8N8Z8-2|ZNF441;ENSG00000197044|ENST00000357901|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.231689453125	2	501.232364	1000.45018	-0.55457	-0.00027797	0.30304	0.00015189	-0.25154	-0.00012608	501.2322534781103	44.988	0.6614	44.736	44.429	45.091	-0.25252					41	16	3	0	0	0	0.19099	1	4237	4237		90.37	5.0103	1	1197200			34743	9947	23890	23940	39919	39919					-0.05003102098748968
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC|p.L715V|1|0.23|ENSG00000141367|chr17:59668791-59668791|C/G|missense_variant	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.283935546875	2	569.2844	1136.55425	0.34398	0.00019582	-0.97758	-0.00055652	-0.6336	-0.0003607	569.2839725194614	81.437	1.2694	81.208	80.939	82.208	-0.2289					129	29	6	0	0	0	0.10174	4	9763	9753;9763;9775;9799		110.12	10.922	1	48791000			34744	456	23891	23941	39920;39921;39922;39923	39921					-0.008567752712451693
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC|p.L715V|1|0.23|ENSG00000141367|chr17:59668791-59668791|C/G|missense_variant	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2836303710938	2	569.2844	1136.55425	0.34672	0.00019738	-1.1584	-0.00065946	-0.81168	-0.00046208	569.2838656173684	81.384	1.3057	81.191	80.882	82.188	-0.19333					131	30	6	0	0	0	0.03849	6	9795	9759;9771;9795;9807;9819;9844		134.81	24.374	1	46313000			34745	456	23891	23941	39924;39925;39926;39927;39928;39929	39926					-0.008567752712451693
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC|p.L715V|1|0.23|ENSG00000141367|chr17:59668791-59668791|C/G|missense_variant	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2835083007812	2	569.2844	1136.55425	-0.40444	-0.00023024	-0.38013	-0.0002164	-0.78457	-0.00044665	569.2842976893792	81.356	1.3137	81.213	80.9	82.214	-0.14249					127	30	6	0	0	0	0.021872	6	9744	9735;9744;9756;9780;9804;9817		148.04	27.175	1	45490000			34746	456	23891	23941	39930;39931;39932;39933;39934;39935	39931					-0.008567752712451693
KSFEGLSKP	9	Unmodified	_KSFEGLSKP_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.23541259765625	2	496.7742	991.533846	-0.56299	-0.00027968	-0.67938	-0.0003375	-1.2424	-0.00061718	496.7735417498852	31.136	0.488	30.895	30.585	31.073	-0.24109					14	11	2	0	0	0	0.024484	1	2027	2027		30.318	0	1	111950			34747	10177	23892	23942	39936	39936					0.03774054068958321
KSFEKAKESW	10	Unmodified	_KSFEKAKESW_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF;ENSG00000096060|ENST00000357266|FKBP5	ENSG00000004478|ENST00000001008|FKBP4;ENSG00000096060|ENST00000357266|FKBP5	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.8838195800781	3	413.883789	1238.62954	-0.42583	-0.00017624	0.22895	9.4757E-05	-0.19689	-8.1488E-05	413.8838322753046	27.944	1.333	27.699	27.376	28.709	-0.24524					67	31	4	0	0	0	0.41983	4	1572	1572;1583;1595;1608		96.665	24.422	1	3811400			34748	740;2045	23893	23943	39937;39938;39939;39940	39937					0.019767821891718995
KSFEKAKESW	10	Unmodified	_KSFEKAKESW_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF;ENSG00000096060|ENST00000357266|FKBP5	ENSG00000004478|ENST00000001008|FKBP4;ENSG00000096060|ENST00000357266|FKBP5	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.8840026855469	3	413.883789	1238.62954	-0.89102	-0.00036878	0.73279	0.00030329	-0.15823	-6.5487E-05	413.8840432418515	27.798	1.3688	27.63	27.273	28.642	-0.16816					70	32	4	0	0	0	0.39693	4	1554	1554;1563;1575;1590		99.013	20.749	1	4539400			34749	740;2045	23893	23943	39941;39942;39943;39944	39941					0.019767821891718995
KSFEKAKESW	10	Unmodified	_KSFEKAKESW_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF;ENSG00000096060|ENST00000357266|FKBP5	ENSG00000004478|ENST00000001008|FKBP4;ENSG00000096060|ENST00000357266|FKBP5	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.8839111328125	3	413.883789	1238.62954	-0.058618	-2.4261E-05	-0.039081	-1.6175E-05	-0.097699	-4.0436E-05	413.88371879494724	27.839	1.2577	27.687	27.312	28.57	-0.15195					81	30	4	0	0	0	0.22838	4	1540	1529;1540;1552;1565		117.53	43.361	1	4063400			34750	740;2045	23893	23943	39945;39946;39947;39948	39946					0.019767821891718995
KSFENIQNW	9	Unmodified	_KSFENIQNW_					0	0	0		ENSG00000143545|ENST00000368575|RAB13;ENST00000462680.5_1_1:153955646-153957199:-|nuORF	ENSG00000143545|ENST00000368575|RAB13	ENSG00000143545|ENST00000368575|RAB13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.2853393554688	2	583.285463	1164.55637	-0.95636	-0.00055783	0.42683	0.00024897	-0.52953	-0.00030887	583.2857228340147	55.319	1.8583	55.173	54.8	56.658	-0.14609					109	49	4	0	0	0	0.015512	7	5945	5900;5909;5921;5933;5945;5957;5970		199.7	75.624	1	35057000			34751	5661	23894	23944	39949;39950;39951;39952;39953;39954;39955	39953					-0.01932346533430973
KSFENIQNW	9	Unmodified	_KSFENIQNW_					0	0	0		ENSG00000143545|ENST00000368575|RAB13;ENST00000462680.5_1_1:153955646-153957199:-|nuORF	ENSG00000143545|ENST00000368575|RAB13	ENSG00000143545|ENST00000368575|RAB13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.2857666015625	2	583.285463	1164.55637	-0.75023	-0.0004376	0.21616	0.00012608	-0.53406	-0.00031151	583.2856405806856	55.315	2.0349	55.109	54.722	56.756	-0.20613					114	54	4	0	0	0	0.012922	7	5890	5890;5901;5913;5925;5937;5951;5964		172.25	59.838	1	37885000			34752	5661	23894	23944	39956;39957;39958;39959;39960;39961;39962	39956					-0.01932346533430973
KSFENISKW	9	Unmodified	_KSFENISKW_					0	0	0		ENSG00000084733|ENST00000264710|RAB10;ENST00000462003.5_1_2:26332694-26350111:+|nuORF	ENSG00000084733|ENST00000264710|RAB10	ENSG00000084733|ENST00000264710|RAB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7978515625	2	569.798206	1137.58186	-0.78707	-0.00044847	0.28775	0.00016396	-0.49932	-0.00028451	569.7982696781697	44.786	1.1455	44.686	44.244	45.39	-0.099449					88	30	4	0	0	0	0.015898	4	4193	4181;4193;4204;4217		157.34	58.763	1	9183300			34753	1778	23895	23945	39963;39964;39965;39966	39964					0.018571279890011283
KSFENISKW	9	Unmodified	_KSFENISKW_					0	0	0		ENSG00000084733|ENST00000264710|RAB10;ENST00000462003.5_1_2:26332694-26350111:+|nuORF	ENSG00000084733|ENST00000264710|RAB10	ENSG00000084733|ENST00000264710|RAB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7975463867188	2	569.798206	1137.58186	-0.34575	-0.00019701	-0.10956	-6.2429E-05	-0.45531	-0.00025944	569.7980059648203	45	1.2115	44.748	44.248	45.459	-0.25252					92	32	4	0	0	0	0.031832	4	4221	4199;4210;4221;4233		140.11	51.935	1	9017000			34754	1778	23895	23945	39967;39968;39969;39970	39969					0.018571279890011283
KSFENISKW	9	Unmodified	_KSFENISKW_					0	0	0		ENSG00000084733|ENST00000264710|RAB10;ENST00000462003.5_1_2:26332694-26350111:+|nuORF	ENSG00000084733|ENST00000264710|RAB10	ENSG00000084733|ENST00000264710|RAB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7974853515625	2	569.798206	1137.58186	-0.49686	-0.00028311	-0.10433	-5.9445E-05	-0.60119	-0.00034256	569.7979654663877	45.023	1.1563	44.812	44.327	45.484	-0.21109					91	31	4	0	0	0	0.031832	3	4215	4204;4215;4227		140.11	54.25	1	8701900			34755	1778	23895	23945	39971;39972;39973	39972					0.018571279890011283
KSFGRDSDEG	10	Unmodified	_KSFGRDSDEG_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.27685546875	2	549.246535	1096.47852	-0.3384	-0.00018586	3.7047	0.0020348	3.3663	0.0018489	549.248290321796	62.083	0.39121	61.869	61.7	62.091	-0.21375					13	9	2	0	0	0	0.03519	1	6956	6956		42.864	11.334	1	157640			34756	3681	23896	23946	39974	39974					-0.06586404189465611
KSFGSAQEF	9	Unmodified	_KSFGSAQEF_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.739990234375	2	500.740357	999.46616	-0.50648	-0.00025362	-0.38813	-0.00019435	-0.89461	-0.00044797	500.7401541967932	40.608	0.78131	40.458	40.189	40.971	-0.1497					69	20	4	0	0	0	0.013924	6	3526	3514;3526;3538;3551;3563;3576		190.62	55.812	1	23575000			34757	9337	23897	23947	39975;39976;39977;39978;39979;39980	39976					-0.03359395861855319
KSFGSAQEF	9	Unmodified	_KSFGSAQEF_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.73980712890625	2	500.740357	999.46616	-0.26135	-0.00013087	-0.71791	-0.00035949	-0.97927	-0.00049036	500.73998175749404	40.792	0.82587	40.567	40.259	41.085	-0.22505					87	21	6	0	0	0	0.0085188	6	3550	3527;3537;3550;3562;3574;3587		253.05	91.149	1	21949000			34758	9337	23897	23947	39981;39982;39983;39984;39985;39986	39983					-0.03359395861855319
KSFGSAQEF	9	Unmodified	_KSFGSAQEF_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7397766113281	2	500.740357	999.46616	-1.5419	-0.0007721	0.60843	0.00030467	-0.93348	-0.00046743	500.7406361377544	40.839	0.88832	40.608	40.308	41.196	-0.2303					91	23	6	0	0	0	0.014478	6	3529	3529;3538;3549;3562;3574;3586		195.57	60.762	1	20593000			34759	9337	23897	23947	39987;39988;39989;39990;39991;39992	39987					-0.03359395861855319
KSFGSAQEFAW	11	Unmodified	_KSFGSAQEFAW_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	629.2987060546875	2	629.29857	1256.58259	-0.57574	-0.00036231	-0.30965	-0.00019486	-0.88539	-0.00055717	629.2982413559491	62.453	0.49496	62.232	61.925	62.42	-0.22097					34	12	4	0	0	0	0.014927	2	7023	7023;7040		133.75	55.489	1	3855200			34760	9337	23898	23948	39993;39994	39993					-0.03544077361948439
KSFGSAQEFAW	11	Unmodified	_KSFGSAQEFAW_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	629.2990112304688	2	629.29857	1256.58259	-1.4971	-0.00094215	1.3909	0.00087527	-0.10627	-6.6873E-05	629.2993878984424	62.322	0.53972	62.144	61.843	62.383	-0.17781					48	13	5	0	0	0	0.089582	1	7015	7015		110.54	41.754	1	3706100			34761	9337	23898	23948	39995	39995					-0.03544077361948439
KSFGSAQEFAW	11	Unmodified	_KSFGSAQEFAW_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	629.2984008789062	2	629.29857	1256.58259	-0.55347	-0.0003483	0.1498	9.4267E-05	-0.40367	-0.00025403	629.2986019613977	62.513	0.53696	62.255	61.936	62.473	-0.25824					36	13	4	0	0	0	0.027116	1	7026	7026		128.35	50.084	1	3818700			34762	9337	23898	23948	39996	39996					-0.03544077361948439
KSFIRLSY	8	Unmodified	_KSFIRLSY_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2691955566406	2	507.292559	1012.57057	-0.86531	-0.00043897	-1.1938	-0.00060561	-2.0591	-0.0010446	507.29153742458146	44.759	0.64404	44.507	44.142	44.786	-0.25252					25	16	3	0	0	0	0.027866	1	4206	4206		37.159	14.117	1	141990			34763	2448	23899	23949	39997	39997					0.06478350685506484
KSFIRLSY	8	Unmodified	_KSFIRLSY_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.292559	1012.57057	-1.1135	-0.00056487	-2.2055	-0.0011188	-3.319	-0.0016837	507.29149248907015	44.57	0.66256	44.359	44.014	44.677	-0.21109	-0.074037	-0.00061189	NaN	37.159	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116130			34764	2448	23899	23949							0.06478350685506484
KSFKLCVTK	9	Unmodified	_KSFKLCVTK_					0	0	0		ENSG00000092931|ENST00000685175|MFSD11;nc|ENSG00000092931|O43934-2|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	ENSG00000092931|ENST00000685175|MFSD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.3137817382812	2	527.309895	1052.60524	0.36426	0.00019208	-1.7199	-0.00090694	-1.3557	-0.00071486	527.3079311842397	83.942	0.43208	83.804	83.588	84.02	-0.13789					15	9	3	0	0	0	0.024495	1	10123	10123		19.997	0	1	51588			34765	2000	23900	23950	39998	39998					0.0810385050192508
KSFKLHFP	8	Unmodified	_KSFKLHFP_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2940673828125	2	502.28982	1002.56509	0.36373	0.0001827	-0.38533	-0.00019355	-0.021602	-1.0851E-05	502.7922556149646	78.275	0.72136	78.044	77.668	78.389	-0.23141					40	16	5	0	0	0	0.027866	1	9310	9310		47.916	15.961	1	148250			34766	6019	23901	23951	39999	39999					0.0639067189368916
KSFKRSSTL	9	Unmodified	_KSFKRSSTL_					0	0	0		ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	ENSG00000162676|ENST00000294702|GFI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.3052368164062	2	527.306198	1052.59784	-0.075703	-3.9919E-05	-2.5728	-0.0013566	-2.6485	-0.0013965	527.3048777539068	98.108	1.4566	97.942	97.397	98.853	-0.16521					71	34	3	0	0	0	0.97455	1	12140	12140		25.574	0.12388	1	571960			34767	6975	23902	23952	40000	40000					0.07364834225904815
KSFLHELY	8	Unmodified	_KSFLHELY_					0	0	0		sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2357177734375	2	518.776742	1035.53893	-0.79692	-0.00041342	1.0944	0.00056775	0.29749	0.00015433	518.777279991944	26.902	0.2944	26.66	26.45	26.744	-0.24217					9	6	2	0	0	0	0.027866	1	1418	1418		24.203	1.1603	1	35445			34768	37928	23903	23953	40001	40001					0.022583579315551106
KSFLHELY	8	Unmodified	_KSFLHELY_					0	0	0		sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	sp|P03207|BRRF1_EBVB9TranscriptionalactivatorBRRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF1PE=3SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.776742	1035.53893	-0.52441	-0.00027205	-0.83955	-0.00043554	-1.364	-0.00070759	518.7762938848631	26.846	0.25513	26.69	26.503	26.758	-0.15664	0.072652	-0.00022679	NaN	29.15	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25577			34769	37928	23903	23953							0.022583579315551106
KSFNVVDVV	9	Unmodified	_KSFNVVDVV_					0	0	0			REV__ENSG00000122176|ENST00000354955|FMOD	REV__ENSG00000122176|ENST00000354955|FMOD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.78173828125	2	503.782025	1005.5495	-0.40357	-0.00020331	-0.077031	-3.8807E-05	-0.4806	-0.00024212	503.7819410742713	47.526	1.3359	47.526	47.146	48.482	0					135	39	5	0	0	0	0.31037	1	4754	4754		74.255	1.3758	1	16725000	+		34770	22629	23904	23954	40002	40002					0.046943405859906306
KSFPGGKEY	9	Unmodified	_KSFPGGKEY_					0	0	0		nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2	nc|ENSG00000072958|Q9BXS5-2|AP1M1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7585754394531	2	506.758549	1011.50255	-0.46066	-0.00023344	0.015668	7.9397E-06	-0.44499	-0.0002255	506.7584187708438	27.86	1.7207	27.615	27.203	28.924	-0.24524					128	40	4	0	0	0	0.015752	5	1566	1549;1566;1579;1604;1615		158.07	50.308	1	2417700			34771	1497;4345	23905	23955	40003;40004;40005;40006;40007	40004					-0.002745189651477631
KSFPGGKEY	9	Unmodified	_KSFPGGKEY_					0	0	0		nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2	nc|ENSG00000072958|Q9BXS5-2|AP1M1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.7582702636719	2	506.758549	1011.50255	-0.88892	-0.00045047	0.53084	0.00026901	-0.35808	-0.00018146	506.75868152195847	27.681	1.6698	27.513	27.142	28.812	-0.16816					130	39	4	0	0	0	0.025498	6	1565	1528;1541;1553;1565;1576;1589		145.16	45.004	1	2535500			34772	1497;4345	23905	23955	40008;40009;40010;40011;40012;40013	40011					-0.002745189651477631
KSFPGGKEY	9	Unmodified	_KSFPGGKEY_					0	0	0		nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2	nc|ENSG00000072958|Q9BXS5-2|AP1M1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7586975097656	2	506.758549	1011.50255	-0.47479	-0.0002406	0.011236	5.6939E-06	-0.46355	-0.00023491	506.7584394372827	27.799	1.4271	27.644	27.268	28.695	-0.15461					107	34	4	0	0	0	0.015752	6	1573	1536;1547;1560;1573;1585;1597		158.07	41.388	1	2838700			34773	1497;4345	23905	23955	40014;40015;40016;40017;40018;40019	40017					-0.002745189651477631
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.81103515625	2	550.810585	1099.60662	-0.47872	-0.00026368	0.014057	7.7429E-06	-0.46466	-0.00025594	550.8105659041279	64.563	0.78773	64.329	64.021	64.808	-0.2345					51	19	4	0	0	0	0.013337	3	7340	7330;7340;7354		176.44	77.815	1	3076700			34774	3291	23906	23956	40020;40021;40022	40021					0.06079807862374764
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.811279296875	2	550.810585	1099.60662	-0.21608	-0.00011902	-0.27536	-0.00015167	-0.49144	-0.00027069	550.8104073377195	64.501	0.7874	64.299	63.99	64.778	-0.20254					50	19	4	0	0	0	0.014738	3	7334	7334;7344;7357		163.15	72.55	1	3397900			34775	3291	23906	23956	40023;40024;40025	40023					0.06079807862374764
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8104858398438	2	550.810585	1099.60662	-0.60468	-0.00033307	0.13353	7.3551E-05	-0.47115	-0.00025951	550.8105588621576	64.585	0.85979	64.33	63.959	64.819	-0.25562					49	21	4	0	0	0	0.01896	3	7337	7327;7337;7351		150.36	65.443	1	3171800			34776	3291	23906	23956	40026;40027;40028	40027					0.06079807862374764
KSFPSIFKF	9	Unmodified	_KSFPSIFKF_					0	0	0		nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	nc|ENSG00000113391|Q8WUF8-4|ARB2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.810585	1099.60662	0.85495	0.00047092	-4.1589	-0.0022907	-3.3039	-0.0018198	550.8086158651867	64.073	0.21394	64.118	64.011	64.225	0.045502	-0.15054	-0.0045138	NaN	176.44	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265220			34777	3291	23906	23956							0.06079807862374764
KSFQPLHNLL	10	Unmodified	_KSFQPLHNLL_					0	0	0			REV__ENSG00000163467|ENST00000368254|TSACC	REV__ENSG00000163467|ENST00000368254|TSACC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	599.2811279296875	2	598.842948	1195.67134	-0.64268	-0.00038487	0.17329	0.00010377	-0.46939	-0.00028109	598.8427295239072	49.339	0.45515	49.059	48.825	49.28	-0.27977					27	11	3	0	0	0	0.03519	1	4956	4956		44.377	0	1	433980	+		34778	25569	23907	23957	40029	40029					0.08133382668370359
KSFQRFGP	8	Unmodified	_KSFQRFGP_					0	0	0			REV__ENST00000547068.5_1_14:34145504-34150054:+|nuORF	REV__ENST00000547068.5_1_14:34145504-34150054:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7841796875	2	483.761426	965.5083	0.39881	0.00019293	-1.6641	-0.00080501	-1.2653	-0.00061208	483.76043657040805	72.302	0.63963	72.302	72.017	72.656	0					36	15	3	0	0	0	0.027866	1	8832	8832		30.504	0	1	447600	+		34779	34858	23908	23958	40030	40030					0.02416624337183748
KSFRHEKT	8	Unmodified	_KSFRHEKT_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2972412109375	2	516.78289	1031.55123	-0.40402	-0.00020879	-0.41592	-0.00021494	-0.81994	-0.00042373	516.782695359968	27.065	0.47504	26.908	26.586	27.061	-0.15664					17	10	2	0	0	0	0.027866	1	1403	1403		22.58	0	1	320600			34780	7521	23909	23959	40031	40031					0.03671394394609706
KSFRRELG	8	Unmodified	_KSFRRELG_					0	0	0		nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF;nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14	nc|ENSG00000169220|O43566-4|RGS14	nc|ENSG00000169220|O43566-4|RGS14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2591857910156	2	496.785433	991.556313	0.04998	2.4829E-05	1.5906	0.00079017	1.6405	0.000815	496.78626681090697	21.067	0.48338	20.89	20.678	21.162	-0.17721					12	9	2	0	0	0	0.027866	1	605	605		30.504	0	1	10501			34781	7914	23910	23960	40032	40032					0.06019698257227901
KSFRRGGI	8	Unmodified	_KSFRRGGI_					0	0	0			REV__PSMC6|p.E245K|1|0.21|ENSG00000100519|chr14:52718994-52718994|G/A|missense_variant	REV__PSMC6|p.E245K|1|0.21|ENSG00000100519|chr14:52718994-52718994|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2715759277344	2	460.774868	919.535184	-0.96361	-0.00044401	-2.4055	-0.0011084	-3.3691	-0.0015524	460.7737923872139	61.07	0.57175	60.894	60.674	61.246	-0.1761					22	13	2	0	0	0	0.027866	1	6829	6829		38.806	3.6054	1	534500	+		34782	37414	23911	23961	40033	40033					0.07219732948374258
KSFSDLFKRF	10	Unmodified	_KSFSDLFKRF_					0	0	0		FGFR3-TACC3|3|fusion;FGFR3-TACC3|6|fusion;FGFR3-TACC3|9|fusion;FGFR3-TACC3|2|fusion;FGFR3-TACC3|1|fusion;FGFR3-TACC3|5|fusion;FGFR3-TACC3|4|fusion;FGFR3-TACC3|12|fusion;FGFR3-TACC3|8|fusion;FGFR3-TACC3|7|fusion;FGFR3-TACC3|11|fusion;FGFR3-TACC3|10|fusion;ENST00000404054.3_1_4:1742398-1742845:+|nuORF;ENST00000470808.1_1_4:1741140-1742845:+|nuORF;ENSG00000013810|ENST00000313288|TACC3	FGFR3-TACC3|3|fusion	FGFR3-TACC3|3|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.5677185058594	3	425.567912	1273.68191	0.72681	0.00030931	-0.72239	-0.00030743	0.004419	1.8806E-06	425.56751536793615	59.426	0.6451	59.178	58.888	59.533	-0.24842					45	15	4	0	0	0	0.72383	1	6560	6560		65.695	19.787	1	1068400			34783	17651	23912	23962	40034	40034					0.05601365322786478
KSFSDLFKRF	10	Unmodified	_KSFSDLFKRF_					0	0	0		FGFR3-TACC3|3|fusion;FGFR3-TACC3|6|fusion;FGFR3-TACC3|9|fusion;FGFR3-TACC3|2|fusion;FGFR3-TACC3|1|fusion;FGFR3-TACC3|5|fusion;FGFR3-TACC3|4|fusion;FGFR3-TACC3|12|fusion;FGFR3-TACC3|8|fusion;FGFR3-TACC3|7|fusion;FGFR3-TACC3|11|fusion;FGFR3-TACC3|10|fusion;ENST00000404054.3_1_4:1742398-1742845:+|nuORF;ENST00000470808.1_1_4:1741140-1742845:+|nuORF;ENSG00000013810|ENST00000313288|TACC3	FGFR3-TACC3|3|fusion	FGFR3-TACC3|3|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	425.567912	1273.68191	0.83575	0.00035567	-0.67881	-0.00028888	0.15695	6.6791E-05	425.56756314916686	59.478	0.60578	59.281	58.969	59.575	-0.19742	0.13103	-4.4715E-05	NaN	65.695	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1085200			34784	17651	23912	23962							0.05601365322786478
KSFSDLFKRF	10	Unmodified	_KSFSDLFKRF_					0	0	0		FGFR3-TACC3|3|fusion;FGFR3-TACC3|6|fusion;FGFR3-TACC3|9|fusion;FGFR3-TACC3|2|fusion;FGFR3-TACC3|1|fusion;FGFR3-TACC3|5|fusion;FGFR3-TACC3|4|fusion;FGFR3-TACC3|12|fusion;FGFR3-TACC3|8|fusion;FGFR3-TACC3|7|fusion;FGFR3-TACC3|11|fusion;FGFR3-TACC3|10|fusion;ENST00000404054.3_1_4:1742398-1742845:+|nuORF;ENST00000470808.1_1_4:1741140-1742845:+|nuORF;ENSG00000013810|ENST00000313288|TACC3	FGFR3-TACC3|3|fusion	FGFR3-TACC3|3|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	425.567912	1273.68191	0.63844	0.0002717	-0.48822	-0.00020777	0.15021	6.3926E-05	425.56754438235765	59.172	0.72519	58.991	58.71	59.435	-0.18134	-0.15909	0.0001986	NaN	65.695	45	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1136700			34785	17651	23912	23962							0.05601365322786478
KSFSQNTNL	9	Unmodified	_KSFSQNTNL_					0	0	0		nc|ENSG00000162086|Q96N20|ZNF75A;ENSG00000162086|ENST00000669516|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2421875	2	519.764363	1037.51417	-1.0218	-0.00053107	4.1029	0.0021326	3.0812	0.0016015	519.7663958523619	69.119	0.46062	68.857	68.666	69.126	-0.26166					17	10	2	0	0	0	0.024447	1	7998	7998		25.574	0	1	254840			34786	6919	23913	23963	40035	40035					-0.0030832194181584782
KSFSSNKK	8	Unmodified	_KSFSSNKK_					0	0	0			REV__ENSG00000163781|ENST00000260810|TOPBP1	REV__ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.7736511230469	2	463.258717	924.50288	0.98811	0.00045775	3.2635	0.0015118	4.2516	0.0019696	463.2601274417872	18.196	0.44267	18.039	17.705	18.148	-0.15637					11	8	2	0	0	0	0.027866	1	287	287		29.17	3.596	1	26703	+		34787	25631	23914	23964	40036	40036					0.037609007547075635
KSFTGQKVD	9	Unmodified	_KSFTGQKVD_					0	0	0			REV__ENSG00000162645|ENST00000370466|GBP2	REV__ENSG00000162645|ENST00000370466|GBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2753601074219	2	505.269281	1008.52401	-0.65045	-0.00032865	3.9554	0.0019986	3.305	0.0016699	505.77315311175226	56.753	0.60092	56.589	56.275	56.876	-0.16431					23	16	2	0	0	0	0.0242	1	6341	6341		42.864	5.7052	1	77401	+		34788	25470	23915	23965	40037	40037					0.02008866063579262
KSFTHSSTF	9	Unmodified	_KSFTHSSTF_					0	0	0		ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552;ENSG00000204514|ENST00000435989|ZNF814	ENST00000596248.1_1_19:58319410-58325921:-|nuORF	ENST00000596248.1_1_19:58319410-58325921:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2537231445312	2	521.253631	1040.49271	-1.6168	-0.00084275	1.3972	0.00072831	-0.21954	-0.00011444	521.2541486953211	28.93	1.1578	28.685	28.241	29.399	-0.24524					50	26	3	0	0	0	0.043667	2	1726	1726;1742		131.03	45.672	1	1257300			34789	8847	23916	23966	40038;40039	40038					-0.025917069705201357
KSFTHSSTF	9	Unmodified	_KSFTHSSTF_					0	0	0		ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552;ENSG00000204514|ENST00000435989|ZNF814	ENST00000596248.1_1_19:58319410-58325921:-|nuORF	ENST00000596248.1_1_19:58319410-58325921:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.25390625	2	521.253631	1040.49271	-0.22764	-0.00011866	0.19944	0.00010396	-0.028201	-1.47E-05	521.2534490261108	28.8	0.99041	28.631	28.213	29.203	-0.16897					49	22	3	0	0	0	0.14024	1	1708	1708		101.6	40.629	1	961300			34790	8847	23916	23966	40040	40040					-0.025917069705201357
KSFTHSSTF	9	Unmodified	_KSFTHSSTF_					0	0	0		ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552;ENSG00000204514|ENST00000435989|ZNF814	ENST00000596248.1_1_19:58319410-58325921:-|nuORF	ENST00000596248.1_1_19:58319410-58325921:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2533569335938	2	521.253631	1040.49271	-0.33309	-0.00017362	0.18481	9.6332E-05	-0.14828	-7.7291E-05	521.253437030271	28.785	1.2529	28.635	28.165	29.418	-0.14952					58	29	3	0	0	0	0.10174	2	1699	1687;1699		110.12	40.578	1	1275400			34791	8847	23916	23966	40041;40042	40042					-0.025917069705201357
KSFVEKVAQ	9	Unmodified	_KSFVEKVAQ_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2573852539062	2	518.295299	1034.57605	-0.18881	-9.7861E-05	-0.41266	-0.00021388	-0.60148	-0.00031174	518.2948491964095	57.905	0.19688	57.672	57.583	57.78	-0.23363					7	4	2	0	0	0	0.024511	1	6342	6342		19.104	4.2386	1	393670			34792	2661	23917	23967	40043	40043					0.06014029477319127
KSFVKVYNY	9	Unmodified	_KSFVKVYNY_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;ENST00000441321.1_1_2:120750895-120751159:-|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.3115844726562	2	574.310949	1146.60735	-0.029823	-1.7128E-05	-0.76025	-0.00043662	-0.79007	-0.00045375	574.3102668145481	42.373	1.0633	42.25	41.924	42.987	-0.12299					58	27	3	0	0	0	0.016584	3	3802	3802;3814;3828		215.39	116.76	1	6586300			34793	4528	23918	23968	40044;40045;40046	40044					0.03990602511407815
KSFVKVYNY	9	Unmodified	_KSFVKVYNY_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;ENST00000441321.1_1_2:120750895-120751159:-|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.31103515625	2	574.310949	1146.60735	-0.53888	-0.00030948	-0.065975	-3.789E-05	-0.60485	-0.00034737	574.3110292256157	42.523	0.95271	42.291	42.006	42.959	-0.23186					56	24	3	0	0	0	0.014454	3	3815	3815;3826;3838		185.55	108.78	1	6782900			34794	4528	23918	23968	40047;40048;40049	40047					0.03990602511407815
KSFVKVYNY	9	Unmodified	_KSFVKVYNY_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;ENST00000441321.1_1_2:120750895-120751159:-|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.3108520507812	2	574.310949	1146.60735	-0.52545	-0.00030177	-0.49778	-0.00028588	-1.0232	-0.00058765	574.3104410643921	42.578	0.88148	42.352	42.069	42.951	-0.22626					51	22	3	0	0	0	0.013065	4	3841	3816;3826;3841;3852		190.26	107.51	1	6805800			34795	4528	23918	23968	40050;40051;40052;40053	40052					0.03990602511407815
KSFVLPSW	8	Unmodified	_KSFVLPSW_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2683410644531	2	482.268553	962.522553	-0.40692	-0.00019624	0.36738	0.00017718	-0.039535	-1.9067E-05	482.2685871210884	69.318	0.96231	69.052	68.701	69.663	-0.26626					45	22	3	0	0	0	0.2677	3	8026	8026;8037;8052		125.81	54.518	1	2073800			34796	2330	23919	23969	40054;40055;40056	40054					0.03979276765460327
KSFVLPSW	8	Unmodified	_KSFVLPSW_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.26837158203125	2	482.268553	962.522553	0.14751	7.1139E-05	-0.32121	-0.00015491	-0.1737	-8.3769E-05	482.2682720938856	69.263	0.86738	69.021	68.707	69.574	-0.24277					53	20	4	0	0	0	0.15677	2	8029	8029;8040		147.69	51.503	1	2248100			34797	2330	23919	23969	40057;40058	40057					0.03979276765460327
KSFVLPSW	8	Unmodified	_KSFVLPSW_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.26873779296875	2	482.268553	962.522553	0.011448	5.5209E-06	-0.42307	-0.00020404	-0.41163	-0.00019851	482.26830196665264	69.226	0.82872	69.003	68.685	69.514	-0.22245					54	19	5	0	0	0	0.25873	2	8011	8011;8023		129.68	49.97	1	1969500			34798	2330	23919	23969	40059;40060	40059					0.03979276765460327
KSFYDARLL	9	Unmodified	_KSFYDARLL_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2428588867188	2	556.808574	1111.60259	-0.47945	-0.00026696	0.59477	0.00033117	0.11532	6.4209E-05	556.8088219600207	53.49	0.59569	53.359	53.101	53.696	-0.13068					40	16	3	0	0	0	0.024359	1	5621	5621		32.751	9.2278	1	950910			34799	17782;3831	23920	23970	40061	40061					0.051257183686630015
KSFYDARLL	9	Unmodified	_KSFYDARLL_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2426147460938	2	556.808574	1111.60259	-0.15386	-8.5673E-05	0.24722	0.00013766	0.09336	5.1983E-05	556.8085562518296	53.689	0.58322	53.444	53.163	53.746	-0.2453					45	16	4	0	0	0	0.024	1	5635	5635		59.931	34.481	1	954540			34800	17782;3831	23920	23970	40062	40062					0.051257183686630015
KSFYDARLL	9	Unmodified	_KSFYDARLL_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;KBTBD7|p.Y367Hfs*4|1|0.06|ENSG00000120696|chr13:41193151-41193160|CATTGTGTAA/-|frameshift_variant;ENSG00000165572|ENST00000379485|KBTBD6;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant;ENSG00000120696|ENST00000379483|KBTBD7	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2427368164062	2	556.808574	1111.60259	-0.37091	-0.00020653	0.20418	0.00011369	-0.16673	-9.2839E-05	556.8086072681004	53.508	0.77542	53.31	52.934	53.709	-0.19739					53	21	4	0	0	0	0.024409	1	5604	5604		41.427	12.257	1	778010			34801	17782;3831	23920	23970	40063	40063					0.051257183686630015
KSFYDRLS	8	Unmodified	_KSFYDRLS_					0	0	0			REV__ENST00000579531.5_1_17:55334408-55351634:+|nuORF	REV__ENST00000579531.5_1_17:55334408-55351634:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2739562988281	2	508.263999	1014.51345	-0.23769	-0.00012081	-0.16973	-8.627E-05	-0.40743	-0.00020708	508.2638817341179	67.529	0.7993	67.24	66.872	67.671	-0.28834					43	19	3	0	0	0	0.027866	1	8005	8005		49.442	0	1	1203800	+		34802	24921	23921	23971	40064	40064					0.006768834091303688
KSGAKRNAIY	10	Unmodified	_KSGAKRNAIY_					0	0	0		ENST00000261693.10_1_12:125267275-125270928:-|nuORF	ENST00000261693.10_1_12:125267275-125270928:-|nuORF	ENST00000261693.10_1_12:125267275-125270928:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3163452148438	2	554.317097	1106.61964	-0.29594	-0.00016405	-1.2419	-0.00068841	-1.5379	-0.00085246	554.3165386146633	22.205	0.62212	22.003	21.663	22.285	-0.20199					38	12	5	0	0	0	0.74632	1	744	744		64.207	16.292	1	176400			34803	11479	23922	23972	40065	40065					0.07059638974487825
KSGELLATW	9	Unmodified	_KSGELLATW_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.77337646484375	2	502.7742	1003.53385	0.033133	1.6658E-05	-0.25748	-0.00012945	-0.22435	-0.0001128	502.77371311535643	59.131	0.53156	58.943	58.858	59.389	-0.18795					23	12	2	0	0	0	0.1158	1	6542	6542		107.01	0	1	1901200			34804	8010	23923	23973	40066	40066					0.032220540689422705
KSGELLATW	9	Unmodified	_KSGELLATW_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.7736511230469	2	502.7742	1003.53385	0.24248	0.00012191	-1.0923	-0.00054916	-0.84978	-0.00042725	502.7732292375826	59.19	0.52961	58.949	58.854	59.384	-0.24166					21	12	2	0	0	0	0.2508	1	6530	6530		82.241	15.811	1	2053900			34805	8010	23923	23973	40067	40067					0.032220540689422705
KSGELLATW	9	Unmodified	_KSGELLATW_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.7742	1003.53385	0.29472	0.00014818	-0.90864	-0.00045684	-0.61392	-0.00030866	502.7734292579685	59.06	0.56511	58.878	58.791	59.356	-0.18134	-0.044813	-0.00025892	NaN	107.01	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1995500			34806	8010	23923	23973							0.032220540689422705
KSGEPLSTW	9	Unmodified	_KSGEPLSTW_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.7559509277344	2	502.756007	1003.49746	-0.099202	-4.9874E-05	-0.44635	-0.0002244	-0.54555	-0.00027428	502.7557315625839	47.28	1.3268	47.183	46.86	48.187	-0.096649					81	35	4	0	0	0	0.014034	5	4624	4602;4612;4624;4637;4652		166.68	67.304	1	9801400			34807	5541	23924	23974	40068;40069;40070;40071;40072	40070					-0.004148228277585986
KSGEPLSTW	9	Unmodified	_KSGEPLSTW_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.7552490234375	2	502.756007	1003.49746	-0.056815	-2.8564E-05	-0.58384	-0.00029353	-0.64066	-0.00032209	502.75568481187645	47.601	1.4262	47.332	46.943	48.369	-0.26939					83	38	4	0	0	0	0.015901	5	4641	4630;4641;4653;4666;4679		157.33	65.738	1	10282000			34808	5541	23924	23974	40073;40074;40075;40076;40077	40074					-0.004148228277585986
KSGEPLSTW	9	Unmodified	_KSGEPLSTW_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.75579833984375	2	502.756007	1003.49746	-0.30301	-0.00015234	-0.43975	-0.00022109	-0.74276	-0.00037343	502.7557440123869	47.406	1.2648	47.212	46.85	48.114	-0.19387					83	33	4	0	0	0	0.014988	4	4623	4612;4623;4635;4648		161.9	63.323	1	10766000			34809	5541	23924	23974	40078;40079;40080;40081	40079					-0.004148228277585986
KSGGPDKPNW	10	Unmodified	_KSGGPDKPNW_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.271728515625	2	543.272355	1084.53016	-1.0557	-0.00057353	0.72051	0.00039143	-0.33519	-0.0001821	543.2726175727101	55.279	0.99716	55.133	54.761	55.759	-0.14609					77	27	4	0	0	0	0.31896	4	5906	5906;5917;5928;5940		107.01	10.118	1	7339400	+		34810	27559	23925	23975	40082;40083;40084;40085	40082					-0.008726157049068206
KSGGPDKPNW	10	Unmodified	_KSGGPDKPNW_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.271240234375	2	543.272355	1084.53016	-0.38195	-0.0002075	0.0023655	1.2851E-06	-0.37958	-0.00020622	543.2722484787516	55.344	1.2652	55.113	54.565	55.83	-0.23087					101	35	5	0	0	0	0.42812	2	5916	5916;5926		95.815	10.654	1	8912100	+		34811	27559	23925	23975	40086;40087	40086					-0.008726157049068206
KSGGPDKPNW	10	Unmodified	_KSGGPDKPNW_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.271240234375	2	543.272355	1084.53016	-0.8736	-0.0004746	0.47655	0.0002589	-0.39705	-0.00021571	543.2725117220277	55.328	1.2857	55.122	54.575	55.86	-0.20613					108	35	5	0	0	0	0.31896	3	5904	5904;5915;5928		107.01	24.567	1	8733900	+		34812	27559	23925	23975	40088;40089;40090	40088					-0.008726157049068206
KSGHIQTALY	10	Unmodified	_KSGHIQTALY_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.3357543945312	2	559.303655	1116.59276	0.90422	0.00050574	-1.8754	-0.0010489	-0.97122	-0.00054321	559.3020884303097	19.553	0.93112	19.319	19.176	20.107	-0.23345					21	18	2	0	0	0	0.03519	1	423	423		24.519	0	1	17510			34813	5421	23926	23976	40091	40091					0.03912530363277256
KSGHLDIT	8	Unmodified	_KSGHLDIT_					0	0	0		ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.24603271484375	2	435.737617	869.460681	0.52816	0.00023014	1.9631	0.0008554	2.4913	0.0010855	435.7384486835919	24.244	0.27143	24.322	24.138	24.41	0.078344					8	5	2	0	0	0	0.027866	1	973	973		27.882	0	1	14040			34814	16419	23927	23977	40092	40092					0.020729253463287023
KSGKKKKA	8	Unmodified	_KSGKKKKA_					0	0	0			REV__ENSG00000171450|ENST00000302625|CDK5R2	REV__ENSG00000171450|ENST00000302625|CDK5R2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.5266418457031	2	437.795269	873.575986	0.31528	0.00013803	4.0082	0.0017548	4.3234	0.0018928	437.797091633757	52.6	0.72416	52.411	52.106	52.831	-0.18982					22	17	2	0	0	0	0.027866	1	5515	5515		12.207	10.879	1	301430	+		34815	26565	23928	23978	40093	40093					0.13414074267984688
KSGKKKKA	8	Unmodified	_KSGKKKKA_					0	0	0			REV__ENSG00000171450|ENST00000302625|CDK5R2	REV__ENSG00000171450|ENST00000302625|CDK5R2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.795269	873.575986	-0.65147	-0.00028521	5.1476	0.0022536	4.4962	0.0019684	437.7975579337077	52.463	0.47348	52.344	52.086	52.56	-0.11876	-0.064205	0.0007648	NaN	12.207	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264220	+		34816	26565	23928	23978							0.13414074267984688
KSGKKKKA	8	Unmodified	_KSGKKKKA_					0	0	0			REV__ENSG00000171450|ENST00000302625|CDK5R2	REV__ENSG00000171450|ENST00000302625|CDK5R2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.795269	873.575986	-0.055772	-2.4417E-05	3.1079	0.0013606	3.0521	0.0013362	437.7972084690069	52.728	0.5525	52.47	52.21	52.763	-0.25838	0.061868	-0.0010212	NaN	12.207	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355010	+		34817	26565	23928	23978							0.13414074267984688
KSGKQLPPHL	10	Unmodified	_KSGKQLPPHL_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.8294677734375	2	552.82984	1103.64513	-0.15403	-8.5152E-05	-1.169	-0.00064625	-1.323	-0.0007314	552.8292427362085	48.913	2.225	48.913	48.585	50.81	0					157	63	5	0	0	0	0.85955	1	5075	5075		56.721	5.5284	1	41692000			34818	10040	23929	23979	40094	40094					0.09745113496887825
KSGLVSCSGLT	11	Unmodified	_KSGLVSCSGLT_					0	0	0			REV__ENST00000582963.1_1_17:37885621-37885774:-|nuORF	REV__ENST00000582963.1_1_17:37885621-37885774:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3052368164062	2	526.276249	1050.53795	-0.39212	-0.00020637	4.251	0.0022372	3.8589	0.0020309	526.2780741096223	65.837	0.70318	65.595	65.085	65.789	-0.24145					42	16	3	0	0	0	0.024778	1	7516	7516		29.17	3.596	1	315490	+		34819	35547	23930	23980	40095	40095					0.014697755003453494
KSGLVVEDHLF	11	Unmodified	_KSGLVVEDHLF_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.33349609375	2	622.337695	1242.66084	0.86696	0.00053954	-2.6556	-0.0016527	-1.7887	-0.0011132	622.3359965526924	109.95	0.83836	109.95	109.77	110.61	0					74	26	4	0	0	0	1.0483	1	14028	14028		25.574	6.4705	1	2123200			34820	8159	23931	23981	40096	40096					0.0492135522326862
KSGPIYIIT	9	Unmodified	_KSGPIYIIT_					0	0	0		ENSG00000134853|ENST00000257290|PDGFRA;ENST00000507536.1_1_4:55143544-55147845:+|nuORF;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000134853|P16234-3|PDGFRA	ENSG00000134853|ENST00000257290|PDGFRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.31060791015625	2	496.294768	990.574983	1.0399	0.00051609	-1.3154	-0.00065282	-0.2755	-0.00013673	496.29416709759175	74.601	0.88765	74.601	74.382	75.269	0					45	21	3	0	0	0	0.024477	1	9180	9180		9.7057	0	1	225410			34821	4836;18289	23932	23982	40097	40097					0.0793181510841805
KSGPVVSLGW	10	Unmodified	_KSGPVVSLGW_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3004150390625	2	515.290017	1028.56548	-0.31879	-0.00016427	-0.2808	-0.00014469	-0.59959	-0.00030896	515.2896733145117	62.414	0.57533	62.193	61.844	62.42	-0.22097					23	14	2	0	0	0	0.03519	1	7026	7026		96.034	23.154	1	2169800			34822	10587	23933	23983	40098	40098					0.05234046822897653
KSGPVVSLGW	10	Unmodified	_KSGPVVSLGW_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2997436523438	2	515.290017	1028.56548	-0.73952	-0.00038107	-2.0399	-0.0010511	-2.7794	-0.0014322	515.2887868154347	62.461	0.1545	62.278	62.223	62.377	-0.18386					6	3	2	0	0	0	0.03519	1	7026	7026		72.879	0	1	810320			34823	10587	23933	23983	40099	40099					0.05234046822897653
KSGPVVSLGW	10	Unmodified	_KSGPVVSLGW_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2979125976562	2	515.290017	1028.56548	-0.81919	-0.00042212	1.6084	0.00082879	0.7892	0.00040667	515.2908594025995	62.336	0.38522	62.159	61.843	62.229	-0.17781					15	9	2	0	0	0	0.03519	1	7016	7016		104.06	5.4274	1	2179800			34824	10587	23933	23983	40100	40100					0.05234046822897653
KSGPVVSLGW	10	Unmodified	_KSGPVVSLGW_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2990112304688	2	515.290017	1028.56548	-0.38776	-0.00019981	0.020611	1.0621E-05	-0.36715	-0.00018919	515.2899265456311	62.527	0.57645	62.269	61.897	62.473	-0.25824					24	14	2	0	0	0	0.03519	1	7023	7023		117.81	42.768	1	2743400			34825	10587	23933	23983	40101	40101					0.05234046822897653
KSGPVYVAVL	10	Unmodified	_KSGPVYVAVL_					0	0	0			REV__ENST00000477551.5_3_3:150282135-150285804:+|nuORF	REV__ENST00000477551.5_3_3:150282135-150285804:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	516.808042	1031.60153	-0.25917	-0.00013394	-3.4812	-0.0017991	-3.7404	-0.0019331	516.8062075677803	53.739	0.49393	53.542	53.275	53.769	-0.19739					28	14	3	0	0	0	0.03519	1	5644	5644		75.043	0	1	522960	+		34826	33338	23934	23984	40102	40102					0.08699503999741864
KSGRGGSLKLV	11	Unmodified	_KSGRGGSLKLV_					0	0	0		ENST00000297347.7_1_8:118532989-118533100:+|nuORF	ENST00000297347.7_1_8:118532989-118533100:+|nuORF	ENST00000297347.7_1_8:118532989-118533100:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7801513671875	2	551.340572	1100.66659	-0.50135	-0.00027642	2.6214	0.0014453	2.12	0.0011689	551.3422501882295	45.283	0.36764	45.327	45.11	45.478	0.043877					21	10	3	0	0	0	0.024723	1	4325	4325		23.523	0	1	211700			34827	11861	23935	23985	40103	40103					0.12028498525592113
KSGSVQEQW	9	Unmodified	_KSGSVQEQW_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENST00000477648.1_1_9:103064475-103066198:-|nuORF	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.7568359375	2	524.756538	1047.49852	-0.26599	-0.00013958	0.11607	6.0907E-05	-0.14992	-7.8671E-05	524.7564450106493	34.948	1.0288	34.732	34.307	35.336	-0.21555					62	25	4	0	0	0	0.015077	1	2611	2611		190.62	70.001	1	1888400			34828	5065	23936	23986	40104	40104					-0.023326084588461526
KSGSVQEQW	9	Unmodified	_KSGSVQEQW_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENST00000477648.1_1_9:103064475-103066198:-|nuORF	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.7567138671875	2	524.756538	1047.49852	-0.34439	-0.00018072	0.1834	9.6242E-05	-0.16099	-8.448E-05	524.7565228012209	34.788	1.0366	34.581	34.242	35.279	-0.20695					56	25	4	0	0	0	0.014475	2	2596	2584;2596		185.72	45.864	1	1908200			34829	5065	23936	23986	40105;40106	40106					-0.023326084588461526
KSGSVQEQW	9	Unmodified	_KSGSVQEQW_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENST00000477648.1_1_9:103064475-103066198:-|nuORF	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.7568359375	2	524.756538	1047.49852	-0.39117	-0.00020527	0.29431	0.00015444	-0.096859	-5.0827E-05	524.7565431495303	34.792	0.73827	34.605	34.323	35.061	-0.18675					52	18	4	0	0	0	0.0158	2	2569	2569;2579		195.57	61.76	1	1991900			34830	5065	23936	23986	40107;40108	40107					-0.023326084588461526
KSGTTATVVTV	11	Unmodified	_KSGTTATVVTV_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2823486328125	2	532.303321	1062.59209	-0.79208	-0.00042162	1.5357	0.00081748	0.74366	0.00039585	532.3039257676729	39.131	0.62648	39.131	38.833	39.459	0					34	17	3	0	0	0	0.024727	1	3293	3293		20.837	0	1	240250	+		34831	21856	23937	23987	40109	40109					0.06329690923575981
KSGYQKLLELI	11	Unmodified	_KSGYQKLLELI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.2662048339844	3	431.258856	1290.75474	-0.40507	-0.00017469	0.15923	6.8668E-05	-0.24585	-0.00010602	431.2592222953076	20.911	0.19855	20.698	20.624	20.822	-0.2128					5	3	2	0	0	0	0.024735	1	571	571		27.644	8.3812	1	7054.7			34832	7346	23938	23988	40110	40110					0.1209907432557884
KSHEAEAEPSE	11	Unmodified	_KSHEAEAEPSE_					0	0	0		ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.2374572753906	3	405.182563	1212.52586	2.7502	0.0011144	2.4787	0.0010043	5.2289	0.0021187	405.1834689707472	18.572	0.14987	18.33	18.224	18.374	-0.24256					4	2	2	0	0	0	0.024757	1	289	289		20.315	1.0523	1	8340.9			34833	2317	23939	23989	40111	40111					-0.0719016970915618
KSHEAEAEPSE	11	Unmodified	_KSHEAEAEPSE_					0	0	0		ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	ENSG00000101363|ENST00000373606|MANBAL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	405.182563	1212.52586	0.94685	0.00038365	4.4299	0.0017949	5.3767	0.0021785	405.18419558074953	18.504	0.44603	18.3	18.064	18.51	-0.20371	-0.014769	0.00048306	NaN	20.315	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11383			34834	2317	23939	23989							-0.0719016970915618
KSHLIALAL	9	Unmodified	_KSHLIALAL_					0	0	0			REV__nc|ENSG00000184381|O60733-2|PLA2G6	REV__nc|ENSG00000184381|O60733-2|PLA2G6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2412109375	2	483.310752	964.606951	-0.2028	-9.8016E-05	0.17878	8.6405E-05	-0.024023	-1.1611E-05	483.3106917799697	67.243	0.62592	67.005	66.796	67.422	-0.23814					21	14	2	0	0	0	0.024477	1	7718	7718		27.882	1.0861	1	257820	+		34835	27665	23940	23990	40112	40112					0.12323227582214713
KSHLIALAL	9	Unmodified	_KSHLIALAL_					0	0	0			REV__nc|ENSG00000184381|O60733-2|PLA2G6	REV__nc|ENSG00000184381|O60733-2|PLA2G6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	483.310752	964.606951	-0.24784	-0.00011978	0.66093	0.00031943	0.41309	0.00019965	483.3108008902651	67.384	1.009	67.096	66.623	67.632	-0.28834	-0.012918	0.00020202	NaN	27.882	68	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2378900	+		34836	27665	23940	23990							0.12323227582214713
KSHLIALAL	9	Unmodified	_KSHLIALAL_					0	0	0			REV__nc|ENSG00000184381|O60733-2|PLA2G6	REV__nc|ENSG00000184381|O60733-2|PLA2G6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.310752	964.606951	0.68008	0.00032869	-0.48989	-0.00023677	0.19019	9.1919E-05	483.31037195964467	67.417	0.79359	67.162	66.786	67.579	-0.25516	0.053388	-0.00091039	NaN	27.882	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299580	+		34837	27665	23940	23990							0.12323227582214713
KSHLIALAL	9	Unmodified	_KSHLIALAL_					0	0	0			REV__nc|ENSG00000184381|O60733-2|PLA2G6	REV__nc|ENSG00000184381|O60733-2|PLA2G6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.310752	964.606951	-0.35845	-0.00017324	0.82586	0.00039915	0.46741	0.0002259	483.3109682987085	67.358	0.58107	67.131	66.814	67.395	-0.2263	0.022818	0.00036144	NaN	27.882	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242740	+		34838	27665	23940	23990							0.12323227582214713
KSHLVGRTL	9	Unmodified	_KSHLVGRTL_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3233337402344	2	505.808908	1009.60326	-1.1584	-0.00058595	0.66033	0.000334	-0.49812	-0.00025195	505.8091513685231	38.855	0.85492	38.882	38.462	39.317	0.027275					43	22	3	0	0	0	0.024418	1	3281	3281		30.318	0	1	393350	+		34839	26014	23941	23991	40113	40113					0.098845578083683
KSHMTYWRL	9	Unmodified	_KSHMTYWRL_					0	0	0		nc|ENSG00000164509|Q8NI17-4|IL31RA;nc|ENSG00000164509|Q8NI17-7|IL31RA;nc|ENSG00000164509|Q8NI17-9|IL31RA;nc|ENSG00000164509|Q8NI17-8|IL31RA;nc|ENSG00000164509|Q8NI17-10|IL31RA;nc|ENSG00000164509|Q8NI17-11|IL31RA;nc|ENSG00000164509|Q8NI17-3|IL31RA;nc|ENSG00000164509|Q8NI17-5|IL31RA;nc|ENSG00000164509|Q8NI17|IL31RA;nc|ENSG00000164509|Q8NI17-12|IL31RA;ENSG00000164509|ENST00000652347|IL31RA	nc|ENSG00000164509|Q8NI17-4|IL31RA	nc|ENSG00000164509|Q8NI17-4|IL31RA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3109741210938	2	611.3135	1220.61245	-1.5982	-0.00097699	-3.2216	-0.0019694	-4.8198	-0.0029464	611.31142711844	47.145	1.5227	47.204	46.247	47.769	0.059097					108	43	5	0	0	0	0.19099	1	4662	4662		90.37	10.657	1	3697800			34840	7287	23942	23992	40114	40114					0.010965831024122963
KSHPPTKKR	9	Unmodified	_KSHPPTKKR_					0	0	0			REV__ENST00000592621.5_2_19:5927995-5941693:-|nuORF	REV__ENST00000592621.5_2_19:5927995-5941693:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2837524414062	2	539.827632	1077.64071	-0.49832	-0.00026901	2.8602	0.001544	2.3619	0.001275	539.8289786700196	41.45	0.56876	41.315	41.099	41.668	-0.13553					37	14	4	0	0	0	0.024477	1	3709	3709		20.947	4.4738	1	884450	+		34841	35750	23943	23993	40115	40115					0.1049964907397225
KSHSRHRH	8	Unmodified	_KSHSRHRH_					0	0	0			REV__nc|ENSG00000134748|Q8NAV1-2|PRPF38A	REV__nc|ENSG00000134748|Q8NAV1-2|PRPF38A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8009643554688	2	522.781548	1043.54854	-0.44231	-0.00023123	3.4872	0.001823	3.0449	0.0015918	522.7825960291443	19.897	0.47277	19.785	19.551	20.024	-0.11138					23	9	4	0	0	0	0.027866	1	433	433		27.882	2.3082	1	206710	+		34842	23474	23944	23994	40116	40116					0.02850983780331262
KSHVGRLLAR	10	Unmodified	_KSHVGRLLAR_					0	0	0		TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant;ENSG00000198113|ENST00000357503|TOR4A	TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.8534545898438	2	568.854181	1135.69381	0.53704	0.0003055	-2.0653	-0.0011748	-1.5282	-0.00086933	568.8529077944462	101.24	1.8533	101.1	100.77	102.62	-0.13156					114	42	5	0	0	0	1.0616	1	12533	12533		37.812	2.6108	1	7301700			34843	10097	23945	23995	40117	40117					0.1313902685665198
KSIASMLK	8	Unmodified	_KSIASMLK_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7526550292969	2	439.262413	876.510274	0.09255	4.0654E-05	-0.51429	-0.00022591	-0.42174	-0.00018525	439.26211720758613	28.065	1.975	27.913	26.849	28.824	-0.15195					73	47	2	0	0	0	0.027866	1	1429	1429		25.45	0	1	209230	+		34844	26394	23946	23996	40118	40118					0.06707917030769295
KSIAYYIC	8	Unmodified	_KSIAYYIC_					0	0	0			REV__ENSG00000183862|ENST00000329903|CNGA2	REV__ENSG00000183862|ENST00000329903|CNGA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7894592285156	2	480.746596	959.478639	0.33751	0.00016226	3.6541	0.0017567	3.9916	0.0019189	480.748071907895	33.843	0.5127	33.619	33.485	33.997	-0.22412					25	12	3	0	0	0	0.027866	1	2438	2438		19.36	0	1	637600	+		34845	27619	23947	23997	40119	40119					-0.0027207572318275197
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8316040039062	2	565.832049	1129.64954	-1.0688	-0.00060474	0.34826	0.00019706	-0.7205	-0.00040768	565.8322747361151	53.841	1.264	53.705	53.393	54.657	-0.13617					107	37	4	0	0	0	0.013719	6	5648	5648;5658;5670;5681;5695;5708		209.19	61.152	1	30188000			34846	6867	23948	23998	40120;40121;40122;40123;40124;40125	40120					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	565.8319091796875	2	565.832049	1129.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.928	1	53.682	53.182	54.182	-0.2453								0	0	0	0.0022487	1	5674	5674		181.41	32.717	1				34847	6867	23948	23998	40126	40126					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	565.8327026367188	2	565.832049	1129.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.983	1	53.738	53.238	54.238	-0.2453								0	0	0	7.9924E-06	1	5685	5685		209.19	51.206	1				34848	6867	23948	23998	40127	40127					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	565.8319091796875	2	565.832049	1129.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.042	1	53.797	53.297	54.297	-0.2453								0	0	0	0.0022487	1	5697	5697		181.41	52.546	1				34849	6867	23948	23998	40128	40128					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	565.8320922851562	2	565.832049	1129.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.104	1	53.859	53.359	54.359	-0.2453								0	0	0	0.0022487	1	5710	5710		181.41	32.717	1				34850	6867	23948	23998	40129	40129					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	565.8317260742188	2	565.832049	1129.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.166	1	53.92	53.42	54.42	-0.2453								0	0	0	7.9924E-06	1	5723	5723		209.19	47.297	1				34851	6867	23948	23998	40130	40130					0.089905779198034
KSIDLIQKW	9	Unmodified	_KSIDLIQKW_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8316040039062	2	565.832049	1129.64954	-0.334	-0.00018899	-0.45462	-0.00025724	-0.78862	-0.00044623	565.8317914662886	53.928	1.2718	53.731	53.422	54.694	-0.19739					102	36	4	0	0	0	0.013337	5	5673	5651;5663;5673;5686;5699		195.05	37.226	1	27052000			34852	6867	23948	23998	40131;40132;40133;40134;40135	40133					0.089905779198034
KSIKNNTLQ	9	Unmodified	_KSIKNNTLQ_					0	0	0			REV__CON__Q05443	REV__CON__Q05443	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.303655	1044.59276	0.31586	0.00016529	-0.64639	-0.00033826	-0.33052	-0.00017296	523.3032602236889	21.294	0.68341	21.103	20.784	21.468	-0.19072					38	13	4	0	0	0	0.26966	1	633	633		79.713	5.4575	1	1114100	+	+	34853	19564	23949	23999	40136	40136					0.07224530363282611
KSILDSWVW	9	Unmodified	_KSILDSWVW_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.R2554Tfs*3|1|0.44|ENSG00000128731|chr15:28201512-28201513|-/T|frameshift_variant;HERC2|p.A2915Qfs*12|1|0.06|ENSG00000128731|chr15:28186659-28186659|C/-|frameshift_variant;ENST00000564383.1_1_15:28525212-28544620:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3029174804688	2	567.303124	1132.5917	0.24418	0.00013852	-0.22313	-0.00012658	0.02105	1.1942E-05	567.3029506070038	86.029	0.65221	85.834	85.594	86.246	-0.19508					34	14	3	0	0	0	0.51687	1	10433	10433		58.23	5.141	1	561430			34854	4311	23950	24000	40137	40137					0.030703159943641367
KSILDSWVW	9	Unmodified	_KSILDSWVW_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.R2554Tfs*3|1|0.44|ENSG00000128731|chr15:28201512-28201513|-/T|frameshift_variant;HERC2|p.A2915Qfs*12|1|0.06|ENSG00000128731|chr15:28186659-28186659|C/-|frameshift_variant;ENST00000564383.1_1_15:28525212-28544620:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3029174804688	2	567.303124	1132.5917	0.27901	0.00015828	-0.26543	-0.00015058	0.013585	7.7071E-06	567.3029111301737	86.003	0.64748	85.865	85.577	86.224	-0.13734					40	14	4	0	0	0	0.48817	1	10425	10425		60.118	15.741	1	469780			34855	4311	23950	24000	40138	40138					0.030703159943641367
KSILDSWVW	9	Unmodified	_KSILDSWVW_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.R2554Tfs*3|1|0.44|ENSG00000128731|chr15:28201512-28201513|-/T|frameshift_variant;HERC2|p.A2915Qfs*12|1|0.06|ENSG00000128731|chr15:28186659-28186659|C/-|frameshift_variant;ENST00000564383.1_1_15:28525212-28544620:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.303124	1132.5917	0.7779	0.0004413	-0.82823	-0.00046986	-0.050332	-2.8554E-05	567.3026396347208	85.849	0.73242	85.7	85.451	86.183	-0.14967	-0.099991	-0.00027373	NaN	60.118	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454180			34856	4311	23950	24000							0.030703159943641367
KSILFGRVL	9	Unmodified	_KSILFGRVL_					0	0	0			REV__ENSG00000105737|ENST00000593562|GRIK5	REV__ENSG00000105737|ENST00000593562|GRIK5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	516.831852	1031.64915	-0.23807	-0.00012304	-0.28439	-0.00014698	-0.52246	-0.00027003	516.8316092983823	53.738	1.0865	53.54	53.201	54.287	-0.19739					84	31	4	0	0	0	0.29158	2	5644	5632;5644		76.774	7.1465	1	10566000	+		34857	21561	23951	24001	40139;40140	40140					0.1345920299061163
KSIPLKVQ	8	Unmodified	_KSIPLKVQ_					0	0	0			REV__nc|ENSG00000007402|Q9NY47|CACNA2D2	REV__nc|ENSG00000007402|Q9NY47|CACNA2D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7428283691406	2	456.797478	911.580402	-0.2185	-9.9808E-05	-0.094491	-4.3163E-05	-0.31299	-0.00014297	456.797408359886	45.86	0.21582	45.599	45.486	45.701	-0.26118					9	5	2	0	0	0	0.027866	1	4381	4381		12.207	0	1	125280	+		34858	36430	23952	24002	40141	40141					0.12107538690884212
KSIPLTKTK	9	Unmodified	_KSIPLTKTK_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3050842285156	2	508.329142	1014.64373	0.39246	0.0001995	-0.69605	-0.00035382	-0.30359	-0.00015432	508.3286923987973	22.06	0.42636	21.871	21.628	22.055	-0.18894					14	8	2	0	0	0	0.024438	1	770	770		29.17	6.5904	1	65403	+		34859	26216	23953	24003	40142	40142					0.1369947940812608
KSIPQASLEP	10	Unmodified	_KSIPQASLEP_					0	0	0		nc|ENSG00000179954|A1L4H1-2|SSC5D;ENSG00000179954|ENST00000389623|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.258544921875	2	535.298039	1068.58152	-1.0525	-0.0005634	0.79754	0.00042692	-0.25496	-0.00013648	535.2984610995412	53.354	0.79907	53.45	52.83	53.629	0.095669					48	21	3	0	0	0	0.03519	1	5687	5687		26.063	0	1	1199900			34860	8948	23954	24004	40143	40143					0.04997708269138457
KSISAHIKFG	10	Unmodified	_KSISAHIKFG_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.3145141601562	2	544.316566	1086.61858	-0.37534	-0.0002043	-3.6548	-0.0019894	-4.0302	-0.0021937	544.3145033770026	42.139	0.8863	42.016	41.718	42.604	-0.12299					64	23	4	0	0	0	1.0508	1	3769	3769		39.253	7.723	1	2658000	+		34861	24228	23955	24005	40144	40144					0.07873424605554646
KSISDGHSW	9	Unmodified	_KSISDGHSW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.74468994140625	2	508.743431	1015.47231	-0.40773	-0.00020743	-0.68588	-0.00034894	-1.0936	-0.00055637	508.74286771343566	30.342	0.75948	30.098	29.779	30.538	-0.24415					52	17	4	0	0	0	0.025498	1	1920	1920		145.16	28.252	1	1520800			34862	1175	23956	24006	40145	40145					-0.0348087763032936
KSISDGHSW	9	Unmodified	_KSISDGHSW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.7442932128906	2	508.743431	1015.47231	-0.94093	-0.00047869	0.088545	4.5046E-05	-0.85238	-0.00043364	508.7433196051706	30.18	0.92788	30.002	29.697	30.625	-0.17817					61	21	4	0	0	0	0.067814	2	1900	1890;1900		122.18	28.17	1	1418900			34863	1175	23956	24006	40146;40147	40147					-0.0348087763032936
KSISDGHSW	9	Unmodified	_KSISDGHSW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.74658203125	2	508.743431	1015.47231	-0.25138	-0.00012789	-1.0035	-0.00051052	-1.2549	-0.00063841	508.74269437371026	30.197	0.97526	30.047	29.709	30.684	-0.14952					48	22	3	0	0	0	0.053401	1	1877	1877		127.46	28.087	1	1412900			34864	1175	23956	24006	40148	40148					-0.0348087763032936
KSISRGNQP	9	Unmodified	_KSISRGNQP_					0	0	0			REV__ENST00000527623.1_1_19:46891683-46893600:+|nuORF;REV__ENSG00000011485|ENST00000012443|PPP5C	REV__ENSG00000011485|ENST00000012443|PPP5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2837829589844	2	493.772522	985.530492	0.66035	0.00032606	3.3911	0.0016744	4.0515	0.0020005	493.77395869748995	71.061	0.26086	70.846	70.695	70.956	-0.21425					7	5	2	0	0	0	0.023842	1	8284	8284		41.427	0	1	43492	+		34865	34478;19933	23957	24007	40149	40149					0.03714804014953188
KSITSNNDDE	10	Unmodified	_KSITSNNDDE_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2799682617188	2	561.749107	1121.48366	-0.57786	-0.00032461	-4.0181	-0.0022572	-4.596	-0.0025818	561.7467444039289	51.394	0.64745	51.117	50.929	51.577	-0.27643					26	16	2	0	0	0	0.03519	1	5238	5238		25.574	1.0549	1	204750			34866	18628	23958	24008	40150	40150					-0.07222145117520995
KSIWKVYVVS	10	Unmodified	_KSIWKVYVVS_					0	0	0		ENST00000369002.8_1_6:108246088-108279112:-|nuORF	ENST00000369002.8_1_6:108246088-108279112:-|nuORF	ENST00000369002.8_1_6:108246088-108279112:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.5719909667969	3	403.572775	1207.69649	-0.75971	-0.0003066	-1.549	-0.00062512	-2.3087	-0.00093171	403.57214569371973	42.804	1.3312	42.578	42.26	43.591	-0.22597					97	35	4	0	0	0	1.1081	1	3895	3895		31.634	2.0835	1	4823100			34867	12911	23959	24009	40151	40151					0.10095437470931756
KSIYEGTLVK	10	Unmodified	_KSIYEGTLVK_					0	0	0			REV__nc|ENSG00000099204|O14639-2|ABLIM1	REV__nc|ENSG00000099204|O14639-2|ABLIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2677001953125	2	569.329339	1136.64412	-0.43846	-0.00024963	-1.7193	-0.00097883	-2.1577	-0.0012285	569.8295627489655	65.661	0.49596	65.41	65.148	65.644	-0.25111					15	11	2	0	0	0	0.03519	1	7477	7477		93.143	5.4468	1	82878	+		34868	20995	23960	24010	40152	40152					0.08126854337319855
KSIYLCLKY	9	Unmodified	_KSIYLCLKY_					0	0	0			REV__ENST00000338639.9_1_1:8045203-8045332:+|nuORF	REV__ENST00000338639.9_1_1:8045203-8045332:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.76708984375	2	565.817553	1129.62055	-0.24422	-0.00013819	1.4598	0.00082596	1.2155	0.00068777	565.8188706412443	40.01	1.3033	40.01	39.425	40.728	0					78	36	3	0	0	0	0.024374	1	3607	3607		40.778	20.781	1	1302700	+		34869	30591	23961	24011	40153	40153					0.06092717299134165
KSIYLCLKY	9	Unmodified	_KSIYLCLKY_					0	0	0			REV__ENST00000338639.9_1_1:8045203-8045332:+|nuORF	REV__ENST00000338639.9_1_1:8045203-8045332:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	565.817553	1129.62055	-1.4445	-0.00081733	3.8358	0.0021704	2.3913	0.001353	565.81965203722	40.271	0.85435	40.294	39.741	40.595	0.023006	0.17549	0.0012879	NaN	40.778	42	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643500	+		34870	30591	23961	24011							0.06092717299134165
KSKAIIEEY	9	Unmodified	_KSKAIIEEY_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000482303.1_1_3:184045142-184045513:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8001708984375	2	540.800414	1079.58628	-0.36993	-0.00020006	0.10237	5.536E-05	-0.26756	-0.0001447	540.8002854624126	34.486	0.54677	34.261	34.033	34.58	-0.22412					40	13	4	0	0	0	0.56934	1	2558	2558		54.776	0	1	1161300			34871	3392	23962	24012	40154	40154					0.049665924119153715
KSKAIIEEY	9	Unmodified	_KSKAIIEEY_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000482303.1_1_3:184045142-184045513:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.801025390625	2	540.800414	1079.58628	-0.49164	-0.00026588	0.20944	0.00011327	-0.2822	-0.00015261	540.8004270063968	34.437	0.6296	34.23	33.895	34.525	-0.20696					40	15	4	0	0	0	0.16638	1	2539	2539		95.815	5.0385	1	1246400			34872	3392	23962	24012	40155	40155					0.049665924119153715
KSKAIIEEY	9	Unmodified	_KSKAIIEEY_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000482303.1_1_3:184045142-184045513:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.8001708984375	2	540.800414	1079.58628	-1.5756	-0.0008521	1.2573	0.00067993	-0.31835	-0.00017216	540.8010069565859	34.409	0.51881	34.234	34.011	34.53	-0.17557					38	12	4	0	0	0	0.22902	1	2521	2521		85.161	0.2453	1	1150100			34873	3392	23962	24012	40156	40156					0.049665924119153715
KSKAIIEEY	9	Unmodified	_KSKAIIEEY_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000482303.1_1_3:184045142-184045513:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.800414	1079.58628	-0.83128	-0.00044956	-6.8075	-0.0036815	-7.6387	-0.004131	540.7961281319836	34.308	0.42359	34.308	34.129	34.552	0	0.07047	-0.0073465	NaN	95.815	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145350			34874	3392	23962	24012							0.049665924119153715
KSKAIIEEY	9	Unmodified	_KSKAIIEEY_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000482303.1_1_3:184045142-184045513:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.800414	1079.58628	-0.54837	-0.00029656	-6.824	-0.0036904	-7.3723	-0.003987	540.7968624992461	34.169	0.42566	34.165	33.988	34.414	-0.0045624	-0.073242	-0.0073644	NaN	95.815	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200340			34875	3392	23962	24012							0.049665924119153715
KSKAIIEEY	9	Unmodified	_KSKAIIEEY_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant;ENST00000482303.1_1_3:184045142-184045513:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.800414	1079.58628	-1.4894	-0.00080547	-5.302	-0.0028674	-6.7915	-0.0036728	540.7975365961063	34.179	0.43141	34.229	34.047	34.479	0.050255	-0.0087291	-0.0057183	NaN	95.815	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131700			34876	3392	23962	24012							0.049665924119153715
KSKASKGSKK	10	Unmodified	_KSKASKGSKK_					0	0	0			REV__ENST00000545698.1_1_12:104359681-104373925:+|nuORF	REV__ENST00000545698.1_1_12:104359681-104373925:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.8270874023438	2	524.827298	1047.64004	0.79891	0.00041929	-1.4791	-0.00077628	-0.6802	-0.00035699	524.8264135376637	97.953	2.024	97.951	97.456	99.48	-0.0020828					149	46	5	0	0	0	1.0719	1	12418	12418		36.447	2.9312	1	12702000	+		34877	34807	23963	24013	40157	40157					0.11812809634284349
KSKDFVQVM	9	Unmodified	_KSKDFVQVM_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;PRKDC|p.R2425T|1|0.23|ENSG00000253729|chr8:47849160-47849160|C/G|missense_variant	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.287841796875	2	541.289159	1080.56377	-2.0762	-0.0011238	-3.4672	-0.0018768	-5.5434	-0.0030006	541.287130824609	40.588	1.7176	40.358	40.007	41.725	-0.23029					100	45	4	0	0	0	0.22379	1	3564	3564		85.862	11.607	1	3550500			34878	10867	23964	24014	40158	40158					0.026706697426334358
KSKDISKTF	9	Unmodified	_KSKDISKTF_					0	0	0		ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.3009033203125	2	527.300581	1052.58661	0.095016	5.0102E-05	-0.60207	-0.00031747	-0.50705	-0.00026737	527.3001977199482	22.963	0.65362	22.761	22.499	23.153	-0.20193					44	13	4	0	0	0	0.077175	2	875	864;875		118.74	54.536	1	626520			34879	3840	23965	24015	40159;40160	40160					0.062420121317472876
KSKDISKTF	9	Unmodified	_KSKDISKTF_					0	0	0		ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.3004760742188	2	527.300581	1052.58661	-0.61972	-0.00032678	0.085536	4.5103E-05	-0.53418	-0.00028167	527.3005644112372	23.087	0.54984	22.901	22.646	23.196	-0.18529					33	11	4	0	0	0	0.023452	2	870	870;881		146.79	70.011	1	641300			34880	3840	23965	24015	40161;40162	40161					0.062420121317472876
KSKDISKTF	9	Unmodified	_KSKDISKTF_					0	0	0		ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.3003540039062	2	527.300581	1052.58661	1.3588	0.00071648	-1.9103	-0.0010073	-0.55153	-0.00029082	527.2994218788782	23.084	0.86149	22.893	22.386	23.248	-0.19117					41	18	4	0	0	0	0.048057	2	845	845;855		129.42	59.794	1	638340			34881	3840	23965	24015	40163;40164	40163					0.062420121317472876
KSKDIVNKM	9	Oxidation (M)	_KSKDIVNKM(Oxidation (M))_		KSKDIVNKM(1)		KSKDIVNKM(69)	0	0	1		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.7999267578125	2	539.799891	1077.58523	3.9384	0.0021259	-3.9004	-0.0021054	0.037982	2.0503E-05	539.7976562126728	17.349	0.34807	17.098	16.928	17.276	-0.25049					12	6	3	0	0	0	0.35556	1	143	143		68.846	19.405	1	79707			34882	5213	23966	24016	40165	40165		213			0.049540547713377237
KSKDKKEE	8	Unmodified	_KSKDKKEE_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.26611328125	2	496.274564	990.534574	0.6598	0.00032744	3.3423	0.0016587	4.0021	0.0019861	496.2760110974656	86.923	1.2736	86.923	86.3	87.573	0					46	29	3	0	0	0	0.027866	1	10966	10966		27.882	1.1893	1	427110			34883	10140	23967	24017	40166	40166					0.038928487179987314
KSKDKNIVSA	10	Unmodified	_KSKDKNIVSA_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165283203125	2	545.316763	1088.61897	-0.6354	-0.0003465	0.4679	0.00025515	-0.1675	-9.1343E-05	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0275	2	11318	11318;11354		42.338	7.1861	1	11705000			34884	5329	23968	24018	40167;40168	40167					0.07820799534761136
KSKDKNIVSA	10	Unmodified	_KSKDKNIVSA_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3163452148438	2	545.316763	1088.61897	-0.23183	-0.00012642	0.0239	1.3033E-05	-0.20793	-0.00011339	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0639	1	11301	11301		37.508	0	1	11601000			34885	5329	23968	24018	40169	40169					0.07820799534761136
KSKDKNIVSA	10	Unmodified	_KSKDKNIVSA_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3171997070312	2	545.316763	1088.61897	-0.46982	-0.0002562	0.22064	0.00012032	-0.24919	-0.00013589	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0447	3	11303	11194;11267;11303		40.058	3.5805	1	12792000			34886	5329	23968	24018	40170;40171;40172	40172					0.07820799534761136
KSKDKNIVSA	10	Unmodified	_KSKDKNIVSA_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.316763	1088.61897	-0.95669	-0.0005217	0.92924	0.00050673	-0.027442	-1.4965E-05	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0074	1	10969	10969		45.022	4.244	1	15621000			34887	5329	23968	24018	40173	40173					0.07820799534761136
KSKDKNIVSA	10	Unmodified	_KSKDKNIVSA_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.316650390625	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0447	2	11119	10995;11119		40.058	0.80534	1	17400000			34888	5329	23968	24018	40174;40175	40175					0.07820799534761136
KSKDKNIVSA	10	Unmodified	_KSKDKNIVSA_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3171997070312	2	545.316763	1088.61897	-0.30292	-0.00016519	0.10816	5.8979E-05	-0.19476	-0.00010621	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.0447	1	10788	10788		40.058	2.8991	1	17068000			34889	5329	23968	24018	40176	40176					0.07820799534761136
KSKDYEFMW	9	Oxidation (M)	_KSKDYEFM(Oxidation (M))W_		KSKDYEFM(1)W		KSKDYEFM(41)W	0	0	1		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.190185546875	3	417.190113	1248.54851	0.50555	0.00021091	-0.12222	-5.099E-05	0.38333	0.00015992	417.1899796781786	50.933	0.98621	50.821	50.525	51.511	-0.11163					71	25	4	0	0	0	0.76818	1	5221	5221		41.427	7.3401	1	1957500			34890	7514	23969	24019	40177	40177		310			-0.06582241845239878
KSKDYEFMW	9	Oxidation (M)	_KSKDYEFM(Oxidation (M))W_		KSKDYEFM(1)W		KSKDYEFM(41)W	0	0	1		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.1904296875	3	417.190113	1248.54851	-0.10008	-4.1752E-05	0.38644	0.00016122	0.28636	0.00011947	417.19019575522447	51.221	0.76462	50.945	50.702	51.467	-0.27643					51	19	3	0	0	0	0.76818	1	5245	5245		41.427	6.2484	1	2080200			34891	7514	23969	24019	40178	40178		310			-0.06582241845239878
KSKDYEFMW	9	Unmodified	_KSKDYEFMW_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.8587341308594	3	411.858475	1232.5536	-0.35326	-0.00014549	0.94434	0.00038894	0.59109	0.00024344	411.8587736491943	56.221	0.85943	56.065	55.748	56.608	-0.15656					57	21	4	0	0	0	0.54416	1	6090	6090		56.434	16.376	1	1826900			34892	7514	23969	24020	40179	40179					-0.053379379826083095
KSKDYEFMW	9	Unmodified	_KSKDYEFMW_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	411.858475	1232.5536	0.27305	0.00011246	0.11276	4.6443E-05	0.38581	0.0001589	411.85837757533983	56.277	0.84436	56.061	55.737	56.582	-0.21607	0.0015505	-0.00075076	NaN	56.434	63	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1649600			34893	7514	23969	24020							-0.053379379826083095
KSKDYEFMW	9	Unmodified	_KSKDYEFMW_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	411.858475	1232.5536	-0.44986	-0.00018528	0.88269	0.00036354	0.43283	0.00017826	411.85874376951114	56.268	0.96456	56.053	55.745	56.709	-0.21551	-0.0067985	0.00020054	NaN	56.434	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1509800			34894	7514	23969	24020							-0.053379379826083095
KSKEDLVSQGF	11	Unmodified	_KSKEDLVSQGF_					0	0	0		nc|ENSG00000167770|Q96FW1-2|OTUB1;ENSG00000167770|ENST00000538426|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2193298339844	3	413.218949	1236.63502	-0.49302	-0.00020372	0.87056	0.00035973	0.37754	0.00015601	413.21930486742235	40.682	1.022	40.546	40.272	41.294	-0.13554					90	26	5	0	0	0	0.80896	1	3546	3546		57.149	24.109	1	5383700			34895	18482	23970	24021	40180	40180					0.026164609809939066
KSKEDLVSQGF	11	Unmodified	_KSKEDLVSQGF_					0	0	0		nc|ENSG00000167770|Q96FW1-2|OTUB1;ENSG00000167770|ENST00000538426|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2192687988281	3	413.218949	1236.63502	-0.23012	-9.5088E-05	0.63176	0.00026106	0.40165	0.00016597	413.2191365902727	40.895	0.98582	40.667	40.329	41.315	-0.2278					78	25	5	0	0	0	0.40024	3	3564	3553;3564;3576		82.831	34.229	1	4646800			34896	18482	23970	24021	40181;40182;40183	40182					0.026164609809939066
KSKEDLVSQGF	11	Unmodified	_KSKEDLVSQGF_					0	0	0		nc|ENSG00000167770|Q96FW1-2|OTUB1;ENSG00000167770|ENST00000538426|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.21923828125	3	413.218949	1236.63502	-0.91717	-0.00037899	1.3574	0.00056089	0.44021	0.0001819	413.2194822435031	40.96	0.90365	40.729	40.45	41.354	-0.23029					65	23	4	0	0	0	0.67481	3	3568	3556;3568;3580		65.278	21.627	1	4584700			34897	18482	23970	24021	40184;40185;40186	40185					0.026164609809939066
KSKELLTQV	9	Unmodified	_KSKELLTQV_					0	0	0		ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2579956054688	2	523.316232	1044.61791	-1.0195	-0.00053353	0.27435	0.00014357	-0.74517	-0.00038996	523.3162516177023	23.435	0.48831	23.435	23.206	23.694	0					18	11	2	0	0	0	0.024344	1	924	924		45.972	13.16	1	71392			34898	17089	23971	24022	40187	40187					0.09738585165837321
KSKELLTQV	9	Unmodified	_KSKELLTQV_					0	0	0		ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.316232	1044.61791	-0.02512	-1.3145E-05	-0.015143	-7.9244E-06	-0.040262	-2.107E-05	523.3158790174613	23.836	0.34909	23.634	23.398	23.747	-0.20193	0.14818	0.00051571	NaN	42.864	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30207			34899	17089	23971	24022							0.09738585165837321
KSKELLTQV	9	Unmodified	_KSKELLTQV_					0	0	0		ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.316232	1044.61791	-0.12575	-6.5809E-05	-0.40361	-0.00021121	-0.52936	-0.00027702	523.3158912638073	23.721	0.21515	23.541	23.436	23.651	-0.17989	0.055063	0.00010913	NaN	42.864	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22948			34900	17089	23971	24022							0.09738585165837321
KSKELLTQV	9	Unmodified	_KSKELLTQV_					0	0	0		ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	ENST00000574700.5_1_17:5384408-5384450:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.316232	1044.61791	1.9222	0.0010059	-3.0591	-0.0016009	-1.137	-0.00059499	523.314633381878	23.774	0.29479	23.583	23.321	23.616	-0.19117	0.096261	-0.0026702	NaN	42.864	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37244			34901	17089	23971	24022							0.09738585165837321
KSKENAKAVA	10	Unmodified	_KSKENAKAVA_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3070678710938	2	523.303655	1044.59276	0.017826	9.3282E-06	-0.38396	-0.00020093	-0.36613	-0.0001916	523.3034574962472	21.168	0.8161	20.99	20.726	21.543	-0.17721					42	16	4	0	0	0	0.71272	1	653	653		66.429	2.222	1	1421900			34902	7839	23972	24023	40188	40188					0.07224530363282611
KSKENFWA	8	Unmodified	_KSKENFWA_					0	0	0			REV__ENSG00000186395|ENST00000269576|KRT10	REV__ENSG00000186395|ENST00000269576|KRT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7897033691406	2	505.258717	1008.50288	-1.0797	-0.00054555	3.9651	0.0020034	2.8854	0.0014578	505.2605966329899	28.492	1.0736	28.247	27.635	28.709	-0.24524					49	25	3	0	0	0	0.027866	1	1664	1664		51.335	14.176	1	466790	+	+	34903	19549	23973	24024	40189	40189					-0.0010309924529110503
KSKENFWA	8	Unmodified	_KSKENFWA_					0	0	0			REV__ENSG00000186395|ENST00000269576|KRT10	REV__ENSG00000186395|ENST00000269576|KRT10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.258717	1008.50288	-0.39739	-0.00020078	-3.1855	-0.0016095	-3.5829	-0.0018103	505.2564259819702	27.977	0.25683	28.058	27.911	28.168	0.081293	-0.12902	-0.006767	NaN	51.335	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40891	+	+	34904	19549	23973	24024							-0.0010309924529110503
KSKENPRNF	9	Unmodified	_KSKENPRNF_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.2987670898438	2	560.298904	1118.58326	0.63244	0.00035435	-1.0499	-0.00058824	-0.41743	-0.00023389	560.2984012798627	19.266	0.74295	19.066	18.612	19.355	-0.2001					37	14	3	0	0	0	0.45795	1	388	388		62.107	0.41614	1	926210			34905	6694	23974	24025	40190	40190					0.028707620777595366
KSKGLANVF	9	Unmodified	_KSKGLANVF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2;ENST00000559195.5_1_14:103592737-103596345:+|nuORF	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.28448486328125	2	482.284734	962.554916	-0.74695	-0.00036024	-0.67538	-0.00032573	-1.4223	-0.00068597	482.2841836450753	38.997	0.67527	38.832	38.515	39.19	-0.16458					51	18	4	0	0	0	0.37611	1	3272	3272		67.494	14.142	1	1899100			34906	9416	23975	24026	40191	40191					0.07214064168454115
KSKGLANVF	9	Unmodified	_KSKGLANVF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2;ENST00000559195.5_1_14:103592737-103596345:+|nuORF	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2838439941406	2	482.284734	962.554916	-0.68251	-0.00032917	-0.65649	-0.00031661	-1.339	-0.00064578	482.28423883504826	39.071	0.76669	38.848	38.497	39.263	-0.22311					50	20	4	0	0	0	0.34489	2	3282	3271;3282		69.628	8.6557	1	1514100			34907	9416	23975	24026	40192;40193	40193					0.07214064168454115
KSKGLANVF	9	Unmodified	_KSKGLANVF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2;ENST00000559195.5_1_14:103592737-103596345:+|nuORF	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	482.284734	962.554916	0.162	7.8131E-05	-1.5954	-0.00076943	-1.4334	-0.0006913	482.28379519327285	39.064	0.79386	38.838	38.523	39.317	-0.2257	-0.00091705	-0.00060428	NaN	69.628	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1640800			34908	9416	23975	24026							0.07214064168454115
KSKGSQTEEW	10	Unmodified	_KSKGSQTEEW_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.2850952148438	2	590.28566	1178.55677	-0.24242	-0.0001431	0.060573	3.5756E-05	-0.18185	-0.00010734	590.2856152249651	23.271	0.62407	23.069	22.733	23.358	-0.20193					39	13	4	0	0	0	0.42599	1	907	907		96.034	26.406	1	623130			34909	5936	23976	24027	40194	40194					-0.025369716042405344
KSKGSQTEEW	10	Unmodified	_KSKGSQTEEW_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	590.28566	1178.55677	-1.1219	-0.00066223	1.1781	0.00069543	0.056256	3.3207E-05	590.286232371928	23.37	0.63404	23.191	22.929	23.563	-0.17989	0.072618	0.0011773	NaN	96.034	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	923210			34910	5936	23976	24027							-0.025369716042405344
KSKGSQTEEW	10	Unmodified	_KSKGSQTEEW_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	590.28566	1178.55677	1.0032	0.00059216	-1.1477	-0.00067744	-0.14447	-8.5279E-05	590.2848534646283	23.285	0.39699	23.094	22.851	23.248	-0.19117	-0.024136	-0.0015684	NaN	96.034	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289410			34911	5936	23976	24027							-0.025369716042405344
KSKHAALL	8	Unmodified	_KSKHAALL_					0	0	0		OR2T3|p.E25K|1|0.12|ENSG00000196539|chr1:248473423-248473423|G/A|missense_variant	OR2T3|p.E25K|1|0.12|ENSG00000196539|chr1:248473423-248473423|G/A|missense_variant	OR2T3|p.E25K|1|0.12|ENSG00000196539|chr1:248473423-248473423|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.27435302734375	2	434.27417	866.533787	-0.15626	-6.7861E-05	-0.040256	-1.7482E-05	-0.19652	-8.5343E-05	434.27415018264725	47.732	1.6469	47.732	47.252	48.899	0					86	48	4	0	0	0	0.96769	1	4840	4840		42.396	3.59	1	18306000			34912	18914	23977	24028	40195	40195					0.09518098859598467
KSKIFQCIEC	10	Unmodified	_KSKIFQCIEC_					0	0	0		ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.53851318359375	3	400.203477	1197.5886	0.98914	0.00039586	0.82626	0.00033067	1.8154	0.00072653	400.2034406610213	25.485	0.90241	25.314	24.869	25.771	-0.17078					75	21	6	0	0	0	0.98044	1	1211	1211		48.602	0.64203	1	2853700			34913	9044	23978	24029	40196	40196					-0.0022901844629359402
KSKIQNENM	9	Oxidation (M)	_KSKIQNENM(Oxidation (M))_		KSKIQNENM(1)		KSKIQNENM(51)	0	0	1		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.2772216796875	2	554.27678	1106.53901	1.4435	0.00080007	-1.0692	-0.00059264	0.37425	0.00020744	554.2758528040018	16.952	0.3015	16.799	16.655	16.957	-0.15385					14	5	4	0	0	0	0.6238	1	125	125		51.193	7.0759	1	65584			34914	8490	23979	24030	40197	40197		352			-0.010000101307468867
KSKKDEEK	8	Unmodified	_KSKKDEEK_					0	0	0			REV__ENSG00000008952|ENST00000337002|SEC62	REV__ENSG00000008952|ENST00000337002|SEC62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.26617431640625	2	496.274564	990.534574	0.16554	8.2151E-05	3.6511	0.001812	3.8167	0.0018941	496.2761289669323	86.91	1.3573	86.873	86.215	87.572	-0.036438					64	31	4	0	0	0	0.027866	1	10943	10943		47.657	3.5405	1	444410	+		34915	19888	23980	24031	40198	40198					0.03892848717987363
KSKKLKAM	8	Unmodified	_KSKKLKAM_					0	0	0			REV__ENSG00000173610|ENST00000286604|UGT2A1	REV__ENSG00000173610|ENST00000286604|UGT2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.3000793457031	2	467.29933	932.584108	-0.63404	-0.00029629	3.3242	0.0015534	2.6901	0.0012571	467.30078445946174	92.148	1.2787	92.148	91.772	93.051	0					66	30	3	0	0	0	1.0574	1	11694	11694		20.482	2.1574	1	1791000	+		34916	26790	23981	24032	40199	40199					0.11511885193090166
KSKKLKAM	8	Unmodified	_KSKKLKAM_					0	0	0			REV__ENSG00000173610|ENST00000286604|UGT2A1	REV__ENSG00000173610|ENST00000286604|UGT2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.3002014160156	2	467.29933	932.584108	-0.17023	-7.9548E-05	2.8018	0.0013093	2.6316	0.0012297	467.3005379277505	92.262	1.0623	92.253	91.795	92.858	-0.0082932					73	25	4	0	0	0	1.0574	1	11668	11668		25.45	12.491	1	2527500	+		34917	26790	23981	24032	40200	40200					0.11511885193090166
KSKKLKAM	8	Unmodified	_KSKKLKAM_					0	0	0			REV__ENSG00000173610|ENST00000286604|UGT2A1	REV__ENSG00000173610|ENST00000286604|UGT2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.30029296875	2	467.29933	932.584108	-1.5174	-0.0007091	4.265	0.001993	2.7476	0.0012839	467.30122631446864	92.271	1.4717	92.128	91.791	93.262	-0.14356					74	34	4	0	0	0	1.0574	1	11336	11336		25.45	7.1258	1	1437400	+		34918	26790	23981	24032	40201	40201					0.11511885193090166
KSKKLKAM	8	Unmodified	_KSKKLKAM_					0	0	0			REV__ENSG00000173610|ENST00000286604|UGT2A1	REV__ENSG00000173610|ENST00000286604|UGT2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.3009033203125	2	467.29933	932.584108	-0.073121	-3.4169E-05	2.8131	0.0013146	2.74	0.0012804	467.3005438633363	92.34	1.0406	92.199	91.748	92.788	-0.14131					54	24	4	0	0	0	1.0574	1	11356	11356		18.324	0.95945	1	951940	+		34919	26790	23981	24032	40202	40202					0.11511885193090166
KSKKSKKR	8	Unmodified	_KSKKSKKR_					0	0	0		ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	ENSG00000274443|ENST00000624510|C8orf89	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3375549316406	2	495.33255	988.650548	0.089712	4.4437E-05	-2.7237	-0.0013491	-2.634	-0.0013047	495.33112746200504	106.06	0.34109	106.06	105.89	106.23	-0.0013123					15	11	2	0	0	0	0.027866	1	13586	13586		3.6843	0.27433	1	141000			34920	11029	23982	24033	40203	40203					0.15576837079368033
KSKKSPIGYL	10	Unmodified	_KSKKSPIGYL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.8045043945312	2	560.839874	1119.66519	0.91844	0.0005151	-1.9202	-0.0010769	-1.0018	-0.00056185	560.8387953472547	19.762	0.24733	19.562	19.405	19.653	-0.2001					7	4	2	0	0	0	0.03519	1	439	439		17.365	5.8539	1	23403			34921	10587	23983	24034	40204	40204					0.11014864436833705
KSKKSPIGYL	10	Unmodified	_KSKKSPIGYL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.839874	1119.66519	0.097428	5.4641E-05	-0.86764	-0.00048661	-0.77021	-0.00043197	560.8394959436606	19.665	0.29496	19.504	19.381	19.676	-0.16079	-0.033739	0.00051843	NaN	17.365	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28575			34922	10587	23983	24034							0.11014864436833705
KSKKSPIGYL	10	Unmodified	_KSKKSPIGYL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.839874	1119.66519	0.85068	0.00047709	-1.2317	-0.00069076	-0.38098	-0.00021367	560.8390867093437	19.781	0.24678	19.547	19.374	19.621	-0.23345	0.0094319	0.00011012	NaN	17.365	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26954			34923	10587	23983	24034							0.11014864436833705
KSKLDAEVSKW	11	Unmodified	_KSKLDAEVSKW_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	430.90673828125	3	430.906594	1289.69795	-0.57919	-0.00024958	-0.20517	-8.8411E-05	-0.78436	-0.00033799	430.906782781049	38.434	1.3877	38.255	37.939	39.327	-0.17929					121	38	7	0	0	0	0.024862	5	3163	3163;3174;3184;3196;3210		129	71.852	1	10873000			34924	1090	23984	24035	40205;40206;40207;40208;40209	40205					0.06469026769036645
KSKLDAEVSKW	11	Unmodified	_KSKLDAEVSKW_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.9065856933594	3	430.906594	1289.69795	-0.50832	-0.00021904	0.3315	0.00014285	-0.17682	-7.6192E-05	430.90674519688923	38.323	1.0607	38.102	37.832	38.892	-0.22149					96	29	4	0	0	0	0.014428	5	3174	3149;3162;3174;3187;3199		134.38	77.75	1	11770000			34925	1090	23984	24035	40210;40211;40212;40213;40214	40212					0.06469026769036645
KSKLDAEVSKW	11	Unmodified	_KSKLDAEVSKW_					0	0	0		nc|ENSG00000044115|P35221-3|CTNNA1;ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.90643310546875	3	430.906594	1289.69795	-0.0215	-9.2645E-06	-0.20856	-8.987E-05	-0.23006	-9.9134E-05	430.9065172426497	38.423	1.2815	38.204	37.894	39.175	-0.21848					89	35	4	0	0	0	0.024862	5	3177	3145;3154;3166;3177;3191		129	63.844	1	10921000			34926	1090	23984	24035	40215;40216;40217;40218;40219	40218					0.06469026769036645
KSKLEKLW	8	Unmodified	_KSKLEKLW_					0	0	0			REV__ENSG00000197077|ENST00000358431|KIAA1671	REV__ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.27978515625	2	516.316035	1030.61752	-0.87549	-0.00045203	0.1113	5.7468E-05	-0.76419	-0.00039456	516.3164385771646	55.299	0.16662	55.153	55.022	55.188	-0.14609					5	4	2	0	0	0	0.027866	1	5914	5914		108.09	5.3142	1	64671	+		34927	28260	23985	24036	40220	40220					0.10343210236646883
KSKLKTVKM	9	Unmodified	_KSKLKTVKM_					0	0	0			REV__ENST00000258400.3_1_2:231973202-231973277:-|nuORF	REV__ENST00000258400.3_1_2:231973202-231973277:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8013916015625	2	531.83882	1061.66309	-0.62682	-0.00033337	1.5612	0.00083028	0.93433	0.00049692	531.839599424693	56.97	0.1693	56.805	56.675	56.845	-0.16431					6	4	2	0	0	0	0.024541	1	6349	6349		24.519	6.1948	1	120440	+		34928	29576	23986	24037	40221	40221					0.13472112427393768
KSKLLAKYQ	9	Unmodified	_KSKLLAKYQ_					0	0	0		ENSG00000182168|ENST00000453304|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.81787109375	2	539.834591	1077.65463	-0.12355	-6.6695E-05	3.4672	0.0018717	3.3437	0.001805	539.8370085729122	74.689	0.38908	74.425	74.142	74.531	-0.26326					14	8	2	0	0	0	0.024495	1	8831	8831		34.173	5.9183	1	379810			34929	9106	23987	24038	40222	40222					0.11890881782414908
KSKLLALLP	9	Unmodified	_KSKLLALLP_					0	0	0		ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.79901123046875	2	491.836603	981.658653	-0.005826	-2.8655E-06	-0.0091052	-4.4783E-06	-0.014931	-7.3438E-06	491.8363957284995	52.702	0.5525	52.443	52.21	52.763	-0.25838					28	13	3	0	0	0	0.024541	1	5509	5509		19.997	7.7899	1	382720			34930	14489	23988	24039	40223	40223					0.1670897127612534
KSKLLALLP	9	Unmodified	_KSKLLALLP_					0	0	0		ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.836603	981.658653	-0.13975	-6.8734E-05	-0.11518	-5.665E-05	-0.25493	-0.00012538	491.83648753901116	52.609	0.5506	52.609	52.351	52.901	0	0.11826	-0.00012323	NaN	14.137	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316380			34931	14489	23988	24039							0.1670897127612534
KSKLLALLP	9	Unmodified	_KSKLLALLP_					0	0	0		ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	491.836603	981.658653	0.30516	0.00015009	-0.49983	-0.00024584	-0.19467	-9.5746E-05	491.83623346921	52.697	0.54834	52.55	52.287	52.835	-0.14723	0.059346	-0.0005016	NaN	14.137	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242950			34932	14489	23988	24039							0.1670897127612534
KSKLLALLP	9	Unmodified	_KSKLLALLP_					0	0	0		ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.836603	981.658653	-0.10471	-5.15E-05	-0.075472	-3.712E-05	-0.18018	-8.862E-05	491.8364802262023	52.453	0.77311	52.545	52.24	53.013	0.091938	0.053817	-8.4169E-05	NaN	14.137	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470920			34933	14489	23988	24039							0.1670897127612534
KSKLLALLP	9	Unmodified	_KSKLLALLP_					0	0	0		ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	ENST00000448892.1_1_3:194238096-194238345:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.836603	981.658653	-0.97358	-0.00047884	0.95021	0.00046735	-0.02337	-1.1494E-05	491.83682789277356	52.471	0.55357	52.353	52.086	52.64	-0.11875	-0.13823	0.00092477	NaN	14.137	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454470			34934	14489	23988	24039							0.1670897127612534
KSKLPNHMP	9	Unmodified	_KSKLPNHMP_					0	0	0		ENST00000215832.10_1_22:22115420-22115609:-|nuORF	ENST00000215832.10_1_22:22115420-22115609:-|nuORF	ENST00000215832.10_1_22:22115420-22115609:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3031005859375	2	526.289494	1050.56443	1.6043	0.00084433	3.7374	0.001967	5.3417	0.0028113	526.2907630481011	63.388	0.53524	63.442	63.267	63.803	0.054104					16	14	2	0	0	0	0.024374	1	7376	7376		40.778	1.972	1	71059			34935	11145	23989	24040	40224	40224					0.04117509182333379
KSKLPNHMP	9	Unmodified	_KSKLPNHMP_					0	0	0		ENST00000215832.10_1_22:22115420-22115609:-|nuORF	ENST00000215832.10_1_22:22115420-22115609:-|nuORF	ENST00000215832.10_1_22:22115420-22115609:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.289494	1050.56443	-0.19073	-0.00010038	6.4565	0.003398	6.2658	0.0032976	526.2924290378653	63.622	0.28817	63.37	63.192	63.48	-0.25141	-0.035878	0.0013386	NaN	40.778	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82618			34936	11145	23989	24040							0.04117509182333379
KSKLSQNNF	9	Unmodified	_KSKLSQNNF_					0	0	0		ENST00000521348.5_1_8:42251729-42259534:+|nuORF;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2882690429688	2	533.288005	1064.56146	-0.62357	-0.00033254	0.13149	7.0119E-05	-0.49208	-0.00026242	533.288006594786	25.354	0.71247	25.183	24.869	25.581	-0.17078					47	16	4	0	0	0	0.19099	1	1192	1192		90.37	21.583	1	2982300			34937	1641	23990	24041	40225	40225					0.031759573291765264
KSKLSQNNF	9	Unmodified	_KSKLSQNNF_					0	0	0		ENST00000521348.5_1_8:42251729-42259534:+|nuORF;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2884521484375	2	533.288005	1064.56146	0.01314	7.0075E-06	-0.48755	-0.00026	-0.47441	-0.000253	533.2876870116213	25.352	0.80039	25.18	24.907	25.708	-0.17151					51	18	4	0	0	0	0.22902	1	1174	1174		85.161	8.3867	1	3385800			34938	1641	23990	24041	40226	40226					0.031759573291765264
KSKLSQNNF	9	Unmodified	_KSKLSQNNF_					0	0	0		ENST00000521348.5_1_8:42251729-42259534:+|nuORF;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.288005	1064.56146	-0.7859	-0.00041911	0.43399	0.00023144	-0.35191	-0.00018767	533.2882005305845	25.554	0.83403	25.327	25.018	25.852	-0.22683	0.096856	0.00048456	NaN	90.37	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3455600			34939	1641	23990	24041							0.031759573291765264
KSKLSSLQFL	10	Unmodified	_KSKLSSLQFL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8431396484375	2	575.845156	1149.67576	-0.59889	-0.00034487	-3.2038	-0.0018449	-3.8027	-0.0021898	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	1.1266	1	10964	10964		29.17	0.020503	1	2151700	+		34940	28058	23991	24042	40227	40227					0.10690847091291289
KSKLTRNNF	9	Unmodified	_KSKLTRNNF_					0	0	0		ENST00000468285.1_1_10:76973815-76980729:+|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENST00000468285.1_1_10:76973815-76980729:+|nuORF	ENST00000468285.1_1_10:76973815-76980729:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.31689453125	2	554.317097	1106.61964	0.29198	0.00016185	-1.522	-0.00084365	-1.23	-0.0006818	554.3164649664375	22.093	0.51856	21.904	21.628	22.147	-0.18894					34	10	5	0	0	0	0.72494	1	764	764		44.377	1.5129	1	226310			34941	7444	23992	24043	40228	40228					0.07059638974465088
KSKLTRNNF	9	Unmodified	_KSKLTRNNF_					0	0	0		ENST00000468285.1_1_10:76973815-76980729:+|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENST00000468285.1_1_10:76973815-76980729:+|nuORF	ENST00000468285.1_1_10:76973815-76980729:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	554.317097	1106.61964	-0.56129	-0.00031113	0.013217	7.3262E-06	-0.54808	-0.00030381	554.3169796033924	22.274	0.42258	22.089	21.858	22.281	-0.18539	0.09022	0.00043515	NaN	44.377	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175170			34942	7444	23992	24043							0.07059638974465088
KSKNNRPLR	9	Unmodified	_KSKNNRPLR_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2854614257812	2	556.835988	1111.65742	-1.3358	-0.00074381	0.65448	0.00036444	-0.6813	-0.00037937	556.8362764501576	24.453	0.75185	24.406	23.826	24.578	-0.047148					22	16	2	0	0	0	0.024457	1	1025	1025		37.159	0	1	30729			34943	9236	23993	24044	40229	40229					0.1060614995992637
KSKPQQSAS	9	Unmodified	_KSKPQQSAS_					0	0	0		ENSG00000187398|ENST00000336930|LUZP2;nc|ENSG00000187398|Q86TE4-4|LUZP2	ENSG00000187398|ENST00000336930|LUZP2	ENSG00000187398|ENST00000336930|LUZP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.8007507324219	2	480.759081	959.503609	0.39469	0.00018975	-4.2783	-0.0020568	-3.8836	-0.0018671	480.7577071589594	94.285	0.35487	94.285	94.007	94.362	0					12	8	2	0	0	0	0.024344	1	12003	12003		54.776	0	1	76774			34944	9624	23994	24045	40230	40230					0.022236954037566647
KSKQDGDLRG	10	Unmodified	_KSKQDGDLRG_					0	0	0		nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP	nc|ENSG00000146147|Q5VWP3-4|MLIP	nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3261108398438	2	552.293819	1102.57309	-0.13192	-7.2858E-05	3.59	0.0019828	3.4581	0.0019099	552.2956583820661	54.093	0.42473	53.848	53.525	53.949	-0.2453					21	13	2	0	0	0	0.03519	1	5727	5727		33.922	0	1	764270			34945	5860	23995	24046	40231	40231					0.02590154352492391
KSKRATKIS	9	Unmodified	_KSKRATKIS_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7835998535156	2	509.822015	1017.62948	-1.5581	-0.00079437	4.4098	0.0022482	2.8517	0.0014538	509.82416948266484	49.369	0.45089	49.444	49.242	49.693	0.074196					27	11	3	0	0	0	0.024447	1	5056	5056		19.104	0	1	289970	+		34946	28150	23996	24047	40232	40232					0.12136826979826765
KSKREDHGD	9	Unmodified	_KSKREDHGD_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7977294921875	2	536.262519	1070.51048	0.18975	0.00010175	1.592	0.00085373	1.7817	0.00095549	536.2638092775255	88.813	1.8836	88.785	87.814	89.698	-0.027657					82	44	3	0	0	0	0.024283	1	11215	11215		47.96	27.013	1	537160	+		34947	22684	23997	24048	40233	40233					-0.02194991715668948
KSKRTDKLS	9	Unmodified	_KSKRTDKLS_					0	0	0		ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3052368164062	2	531.81693	1061.61931	-0.77202	-0.00041058	3.6297	0.0019304	2.8577	0.0015198	532.3200918512755	48.231	0.36176	48.133	47.929	48.291	-0.097553					12	9	2	0	0	0	0.023835	1	4742	4742		53.089	0	1	124570			34948	15887	23998	24049	40234	40234					0.0909621925461579
KSKSHQLLL	9	Unmodified	_KSKSHQLLL_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.7904052734375	2	527.324391	1052.63423	-1.2689	-0.0006691	2.6708	0.0014084	1.4019	0.00073928	527.8275866266504	60.055	0.23087	60.134	60.049	60.28	0.078888					7	5	2	0	0	0	0.024506	1	6804	6804		23.042	0	1	59023	+		34949	36815;36816	23999	24050	40235	40235					0.11001711122617053
KSKTARKSVS	10	Unmodified	_KSKTARKSVS_					0	0	0		nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-7|PDE4D;nc|ENSG00000113448|Q08499-12|PDE4D	nc|ENSG00000113448|Q08499-6|PDE4D	nc|ENSG00000113448|Q08499-6|PDE4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.8106689453125	2	546.330205	1090.64586	-0.60817	-0.00033226	3.8855	0.0021228	3.2774	0.0017905	546.3322753377942	43.528	0.36557	43.416	43.288	43.653	-0.11253					14	9	2	0	0	0	0.03519	1	3980	3980		35.152	15.792	1	120210			34950	18183	24000	24051	40236	40236					0.10415908145932917
KSKTARKSVS	10	Unmodified	_KSKTARKSVS_					0	0	0		nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-7|PDE4D;nc|ENSG00000113448|Q08499-12|PDE4D	nc|ENSG00000113448|Q08499-6|PDE4D	nc|ENSG00000113448|Q08499-6|PDE4D	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.330205	1090.64586	-0.96595	-0.00052773	3.1591	0.0017259	2.1932	0.0011982	546.3318416092684	43.724	0.25381	43.487	43.385	43.639	-0.23736	0.035717	-0.00025247	NaN	28.081	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86799			34951	18183	24000	24051							0.10415908145932917
KSKTKEALFP	10	Unmodified	_KSKTKEALFP_					0	0	0		ENST00000455028.1_1_21:36509013-36511212:+|nuORF	ENST00000455028.1_1_21:36509013-36511212:+|nuORF	ENST00000455028.1_1_21:36509013-36511212:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.83544921875	2	574.837331	1147.66011	0.097744	5.6187E-05	-3.6926	-0.0021227	-3.5949	-0.0020665	574.8352416292701	105.92	0.61894	105.8	105.44	106.06	-0.12381					63	21	4	0	0	0	1.1307	1	13182	13182		26.693	1.1189	1	351890			34952	14569	24001	24052	40237	40237					0.09218560574208823
KSKVEGQEP	9	Unmodified	_KSKVEGQEP_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78314208984375	2	501.266739	1000.51892	-0.93677	-0.00046957	0.26648	0.00013358	-0.67029	-0.00033599	501.2667957929308	43.967	0.73615	43.967	43.511	44.247	0					26	20	2	0	0	0	0.024397	1	4202	4202		47.657	0	1	472330			34953	3925	24002	24053	40238	40238					0.01868562200957058
KSKVPMRE	8	Unmodified	_KSKVPMRE_					0	0	0			REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7772521972656	2	487.776219	973.537886	-0.68407	-0.00033367	-2.7484	-0.0013406	-3.4325	-0.0016743	487.774770345285	52.564	0.64676	52.295	51.907	52.553	-0.26903					30	16	2	0	0	0	0.89627	1	5459	5459		51.335	8.9393	1	1748600	+		34954	24446	24003	24054	40239	40239					0.05005820291012242
KSKVPMRE	8	Unmodified	_KSKVPMRE_					0	0	0			REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	487.776219	973.537886	-0.68407	-0.00033367	-2.7484	-0.0013406	-3.4325	-0.0016743	487.774770345285	52.564	0.64676	52.295	51.907	52.553	-0.26903	0.076952	6.5829E-05	NaN	51.335	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1748600	+		34955	24446	24003	24054							0.05005820291012242
KSKVPPSTQV	10	Unmodified	_KSKVPPSTQV_					0	0	0		nc|ENSG00000153774|Q9UEE9-2|CFDP1;ENST00000566901.5_1_16:75428986-75467250:-|nuORF;ENSG00000153774|ENST00000283882|CFDP1	nc|ENSG00000153774|Q9UEE9-2|CFDP1	nc|ENSG00000153774|Q9UEE9-2|CFDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7733154296875	2	535.813856	1069.61316	-0.5988	-0.00032085	-3.4868	-0.0018683	-4.0856	-0.0021891	535.8110108487841	41.576	0.3584	41.451	41.326	41.685	-0.12484					10	9	2	0	0	0	0.03519	1	3728	3728		35.152	0	1	82197			34956	6355	24004	24055	40240	40240					0.08113701023080466
KSKVSLGSVS	10	Unmodified	_KSKVSLGSVS_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.26617431640625	2	496.292756	990.57096	0.98639	0.00048954	3.263	0.0016194	4.2494	0.0021089	496.2942945854302	87.557	1.0627	87.578	87.178	88.241	0.021263					55	25	4	0	0	0	0.03519	1	10900	10900		31.53	2.3803	1	843050	+		34957	20293	24005	24056	40241	40241					0.07529725614710969
KSKVYSKTPI	10	Unmodified	_KSKVYSKTPI_					0	0	0			REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8435668945312	2	575.845156	1149.67576	-2.0743	-0.0011945	-1.718	-0.00098928	-3.7922	-0.0021837	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.1266	1	11458	11458		29.17	2.4771	1	5238400	+		34958	31451	24006	24057	40242	40242					0.10690847091291289
KSKVYSKTPI	10	Unmodified	_KSKVYSKTPI_					0	0	0			REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.843017578125	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.1088	1	11277	11277		31.53	1.2121	1	6382400	+		34959	31451	24006	24057	40243	40243					0.10690847091291289
KSKWDERYQ	9	Unmodified	_KSKWDERYQ_					0	0	0			REV__ENSG00000198900|ENST00000361337|TOP1	REV__ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.2892150878906	3	413.875405	1238.60439	-0.5515	-0.00022825	-3.405	-0.0014092	-3.9565	-0.0016375	413.8736167897323	34.358	0.36263	34.183	34.011	34.374	-0.17557					14	8	2	0	0	0	0.0245	1	2507	2507		22.58	0	1	90424	+		34960	28512	24007	24058	40244	40244					-0.00537272613382811
KSLALLLGY	9	Unmodified	_KSLALLLGY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.3055419921875	2	489.305136	976.595718	-0.14283	-6.9889E-05	0.015794	7.7279E-06	-0.12704	-6.2161E-05	489.3050283146141	71.534	1.1465	71.259	70.967	72.113	-0.27509					54	27	4	0	0	0	0.28753	2	8344	8344;8358		77.318	31.366	1	1390200			34961	3985	24008	24059	40245;40246	40245					0.10648405488097978
KSLALLLGY	9	Unmodified	_KSLALLLGY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.3049621582031	2	489.305136	976.595718	0.19298	9.4427E-05	-0.18431	-9.0184E-05	0.0086714	4.243E-06	489.3049363010563	71.492	1.2214	71.23	70.908	72.13	-0.26199					61	29	4	0	0	0	0.17822	2	8365	8352;8365		93.195	38.419	1	1934700			34962	3985	24008	24059	40247;40248	40248					0.10648405488097978
KSLALLLGY	9	Unmodified	_KSLALLLGY_					0	0	0		ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.30511474609375	2	489.305136	976.595718	0.89966	0.00044021	-0.98334	-0.00048115	-0.083681	-4.0945E-05	489.30451968222104	71.363	0.82214	71.157	70.877	71.699	-0.20613					51	19	4	0	0	0	0.10174	3	8334	8322;8334;8347		110.12	62.463	1	1532400			34963	3985	24008	24059	40249;40250;40251	40250					0.10648405488097978
KSLALLLNY	9	Unmodified	_KSLALLLNY_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.8158569335938	2	517.815867	1033.61718	0.19608	0.00010153	-0.29286	-0.00015165	-0.096781	-5.0115E-05	517.8155598973952	69.834	1.0665	69.583	69.115	70.182	-0.25063					63	25	3	0	0	0	0.33603	1	8119	8119		70.816	21.375	1	1580600			34964	9474	24009	24060	40252	40252					0.10171790516801593
KSLCDAFAF	9	Unmodified	_KSLCDAFAF_					0	0	0			REV__ENST00000403097.5_1_7:50778658-50860317:-|nuORF	REV__ENST00000403097.5_1_7:50778658-50860317:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8109130859375	2	501.241678	1000.4688	-0.10322	-5.1736E-05	-1.6045	-0.00080425	-1.7077	-0.00085598	501.23926243209024	37.417	2.4142	37.449	36.438	38.852	0.032269					110	65	3	0	0	0	0.024205	1	3152	3152		27.882	0	1	1150200	+		34965	31886	24010	24061	40253	40253					-0.031412637285598066
KSLCLSECGVD	11	Carbamidomethyl (C)	_KSLCLSEC(Carbamidomethyl (C))GVD_	KSLC(0.002)LSEC(0.998)GVD		KSLC(-28)LSEC(28)GVD		0	1	0			REV__ENST00000395159.6_2_14:58878688-58893913:-|nuORF	REV__ENST00000395159.6_2_14:58878688-58893913:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.2734985351562	2	605.775756	1209.53696	-0.87205	-0.00052827	-3.9678	-0.0024036	-4.8399	-0.0029319	605.7730300585715	58.112	0.68253	57.935	57.636	58.318	-0.17775					27	16	2	0	0	0	0.79111	1	6369	6369		58.23	8.6939	2	2691300	+		34966	29318	24011	24062	40254	40254	385				-0.05942806930875122
KSLEEELAK	9	Unmodified	_KSLEEELAK_					0	0	0		ENST00000518253.5_1_6:90312741-90340720:+|nuORF;nc|ENSG00000135299|Q9Y2G4-4|ANKRD6;nc|ENSG00000135299|Q9Y2G4-1|ANKRD6;nc|ENSG00000135299|Q9Y2G4-3|ANKRD6;ENSG00000135299|ENST00000339746|ANKRD6	ENST00000518253.5_1_6:90312741-90340720:+|nuORF	ENST00000518253.5_1_6:90312741-90340720:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7933959960938	2	523.790047	1045.56554	-0.73062	-0.00038269	-1.1894	-0.00062302	-1.9201	-0.0010057	523.7897527918034	38.192	0.54732	37.973	37.535	38.083	-0.21848					22	15	2	0	0	0	0.024261	1	3061	3061		45.972	0	1	160320			34967	4874	24012	24063	40255	40255					0.04458002032242803
KSLEEIYLF	9	Unmodified	_KSLEEIYLF_					0	0	0		ENST00000531065.5_1_16:2014195-2014626:-|nuORF;ENST00000488906.1_1_17:45236795-45237245:-|nuORF;ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENST00000439199.1_1_7:23530116-23530830:+|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.3108520507812	2	571.310615	1140.60668	0.24286	0.00013875	-0.74292	-0.00042444	-0.50005	-0.00028569	571.3101497180902	74.813	1.8282	74.537	74.132	75.96	-0.27573					144	44	5	0	0	0	0.1158	5	8839	8793;8815;8839;8865;8903		107.01	16.407	1	37698000			34968	5459	24013	24064	40256;40257;40258;40259;40260	40258					0.04199763071687812
KSLEEIYLF	9	Unmodified	_KSLEEIYLF_					0	0	0		ENST00000531065.5_1_16:2014195-2014626:-|nuORF;ENST00000488906.1_1_17:45236795-45237245:-|nuORF;ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENST00000439199.1_1_7:23530116-23530830:+|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.310302734375	2	571.310615	1140.60668	0.14466	8.2647E-05	-0.56645	-0.00032362	-0.42179	-0.00024097	571.3102341953938	74.774	2.0445	74.511	73.811	75.855	-0.26326					151	50	6	0	0	0	0.062622	9	8888	8804;8813;8825;8837;8849;8861;8875;8888;8901		124.08	38.156	1	36471000			34969	5459	24013	24064	40261;40262;40263;40264;40265;40266;40267;40268;40269	40268					0.04199763071687812
KSLEEIYLF	9	Unmodified	_KSLEEIYLF_					0	0	0		ENST00000531065.5_1_16:2014195-2014626:-|nuORF;ENST00000488906.1_1_17:45236795-45237245:-|nuORF;ENST00000533161.5_1_16:2012676-2014626:-|nuORF;ENST00000439199.1_1_7:23530116-23530830:+|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	ENST00000531065.5_1_16:2014195-2014626:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.310302734375	2	571.310615	1140.60668	0.53111	0.00030343	-0.91037	-0.0005201	-0.37926	-0.00021667	571.3100493049693	74.596	2.0118	74.413	73.827	75.839	-0.18279					149	49	5	0	0	0	0.067814	7	8810	8775;8786;8798;8810;8822;8835;8850		122.18	21.266	1	34654000			34970	5459	24013	24064	40270;40271;40272;40273;40274;40275;40276	40273					0.04199763071687812
KSLEISKDWQ	10	Unmodified	_KSLEISKDWQ_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.8873291015625	3	411.88731	1232.6401	-0.068317	-2.8139E-05	-0.11186	-4.6075E-05	-0.18018	-7.4214E-05	411.88719092166525	27.604	0.72605	27.362	27.119	27.845	-0.24217					50	16	4	0	0	0	0.85308	1	1543	1543		57.149	0	1	1221100			34971	18094	24014	24065	40277	40277					0.03308764843609424
KSLEISKDWQ	10	Unmodified	_KSLEISKDWQ_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.8876037597656	3	411.88731	1232.6401	-0.57334	-0.00023615	0.48094	0.00019809	-0.092401	-3.8059E-05	411.88743722589396	27.468	0.75517	27.3	27.013	27.768	-0.16816					46	17	3	0	0	0	0.75408	2	1523	1523;1537		63.694	5.0645	1	1460900			34972	18094	24014	24065	40278;40279	40278					0.03308764843609424
KSLENAIEW	9	Unmodified	_KSLENAIEW_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;nc|ENSG00000214517|Q9Y570-4|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2820434570312	2	545.282389	1088.55022	0.18982	0.00010351	-0.53419	-0.00029129	-0.34437	-0.00018778	545.2820241942102	60.161	1.0912	59.964	59.613	60.704	-0.19742					77	27	4	0	0	0	0.014478	4	6691	6669;6680;6691;6704		164.46	28.187	1	6123700			34973	10557	24015	24066	40280;40281;40282;40283	40282					0.009491352350551097
KSLENAIEW	9	Unmodified	_KSLENAIEW_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;nc|ENSG00000214517|Q9Y570-4|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2817993164062	2	545.282389	1088.55022	-0.015385	-8.3893E-06	-0.67208	-0.00036647	-0.68747	-0.00037486	545.2820216882391	59.969	1.7961	59.793	59.078	60.874	-0.1761					78	45	3	0	0	0	0.023452	3	6655	6643;6655;6680		146.79	29.882	1	7184100			34974	10557	24015	24066	40284;40285;40286	40285					0.009491352350551097
KSLENAIEW	9	Unmodified	_KSLENAIEW_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;nc|ENSG00000214517|Q9Y570-4|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2823486328125	2	545.282389	1088.55022	-0.80348	-0.00043812	0.2648	0.00014439	-0.53868	-0.00029373	545.282468501422	60.164	1.3615	59.915	59.495	60.857	-0.24842					92	34	4	0	0	0	0.031832	4	6667	6656;6667;6680;6691		140.11	26.701	1	6362200			34975	10557	24015	24066	40287;40288;40289;40290	40288					0.009491352350551097
KSLEPEDEV	9	Unmodified	_KSLEPEDEV_					0	0	0		ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF	ENSG00000121068|ENST00000240328|TBX2	ENSG00000121068|ENST00000240328|TBX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2577514648438	2	523.256037	1044.49752	-0.26091	-0.00013652	4.1442	0.0021685	3.8833	0.002032	523.2582781028731	23.638	4.5159	23.714	21.689	26.205	0.076239					326	101	5	0	0	0	0.42604	1	786	786		64.207	2.0999	1	8029100			34976	3854	24016	24067	40291	40291					-0.02294867618434182
KSLFKKHCT	9	Unmodified	_KSLFKKHCT_					0	0	0			REV__ENSG00000204859|ENST00000377674|ZBTB48	REV__ENSG00000204859|ENST00000377674|ZBTB48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3169555664062	2	546.305144	1090.59573	-1.1576	-0.0006324	-2.9534	-0.0016134	-4.1109	-0.0022458	546.3034553722799	90.196	0.73738	90.041	89.652	90.39	-0.1552					29	17	2	0	0	0	0.024367	1	11041	11041		22.58	0	1	527750	+		34977	28641	24017	24068	40292	40292					0.05406082216450159
KSLFVGIDD	9	Unmodified	_KSLFVGIDD_					0	0	0			REV__ENST00000506903.1_1_4:26422193-26426401:+|nuORF	REV__ENST00000506903.1_1_4:26422193-26426401:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.30059814453125	2	497.266207	992.517862	-0.50496	-0.0002511	0.22018	0.00010949	-0.28478	-0.00014161	497.266053445667	64.471	0.58679	64.236	64.021	64.607	-0.2345					21	14	2	0	0	0	0.024427	1	7361	7361		19.997	0	1	454140	+		34978	26237	24018	24069	40293	40293					0.02130347832053303
KSLGSLFLF	9	Unmodified	_KSLGSLFLF_					0	0	0			REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22	REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3058166503906	2	506.29731	1010.58007	-0.30257	-0.00015319	1.3095	0.00066299	1.0069	0.00050981	506.2974688003639	69.386	0.86013	69.386	69.094	69.954	0					50	21	3	0	0	0	0.024427	1	8398	8398		26.693	4.733	1	1217300	+		34979	19417	24019	24070	40294	40294					0.07520118971024203
KSLGVTTKF	9	Unmodified	_KSLGVTTKF_					0	0	0		ENST00000477938.5_1_1:219352746-219385067:+|nuORF;ENST00000474379.5_1_1:219347271-219385067:+|nuORF;nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1;ENSG00000143353|ENST00000366928|LYPLAL1;ENST00000463964.5_1_1:219347256-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.7925109863281	2	490.792392	979.570232	-0.58721	-0.0002882	0.26843	0.00013174	-0.31878	-0.00015645	490.7924476207183	37.67	0.69686	37.477	37.229	37.926	-0.193					42	18	3	0	0	0	0.048057	1	3044	3044		129.42	10.678	1	1780700			34980	5636	24020	24071	40295	40295					0.07962930965641135
KSLGVTTKF	9	Unmodified	_KSLGVTTKF_					0	0	0		ENST00000477938.5_1_1:219352746-219385067:+|nuORF;ENST00000474379.5_1_1:219347271-219385067:+|nuORF;nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1;ENSG00000143353|ENST00000366928|LYPLAL1;ENST00000463964.5_1_1:219347256-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7923583984375	2	490.792392	979.570232	-0.86196	-0.00042304	0.53104	0.00026063	-0.33092	-0.00016241	490.7925240445903	37.697	0.85454	37.477	37.076	37.93	-0.2195					49	22	3	0	0	0	0.077175	1	3043	3043		118.74	17.142	1	1748700			34981	5636	24020	24071	40296	40296					0.07962930965641135
KSLGVTTKF	9	Unmodified	_KSLGVTTKF_					0	0	0		ENST00000477938.5_1_1:219352746-219385067:+|nuORF;ENST00000474379.5_1_1:219347271-219385067:+|nuORF;nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1;ENSG00000143353|ENST00000366928|LYPLAL1;ENST00000463964.5_1_1:219347256-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	ENST00000477938.5_1_1:219352746-219385067:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.792392	979.570232	-0.88858	-0.00043611	0.46163	0.00022656	-0.42695	-0.00020954	490.7925097758029	37.725	0.93652	37.507	36.989	37.926	-0.21848	0.020004	5.665E-05	NaN	129.42	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518700			34982	5636	24020	24071							0.07962930965641135
KSLHAYLTQG	10	Unmodified	_KSLHAYLTQG_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7830810546875	2	559.303655	1116.59276	-0.48946	-0.00027376	-3.2757	-0.0018321	-3.7652	-0.0021059	559.3019788178225	31.02	0.20608	30.779	30.669	30.875	-0.24109					8	4	3	0	0	0	0.03519	1	2016	2016		47.96	0.30219	1	42079	+		34983	23178	24021	24072	40297	40297					0.03912530363254518
KSLIIKPF	8	Unmodified	_KSLIIKPF_					0	0	0			REV__ENST00000451388.1_1_7:65686613-65705388:+|nuORF	REV__ENST00000451388.1_1_7:65686613-65705388:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.76934814453125	2	473.310221	944.605889	0.34509	0.00016333	-4.4383	-0.0021007	-4.0932	-0.0019373	473.30800032500434	20.689	0.4401	20.522	20.296	20.736	-0.16774					20	8	3	0	0	0	0.027866	1	556	556		17.365	0	1	178750	+		34984	30106	24022	24073	40298	40298					0.1313701321331564
KSLIIKPF	8	Unmodified	_KSLIIKPF_					0	0	0			REV__ENST00000451388.1_1_7:65686613-65705388:+|nuORF	REV__ENST00000451388.1_1_7:65686613-65705388:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.310221	944.605889	0.72947	0.00034527	-4.6751	-0.0022127	-3.9456	-0.0018675	473.3078579832352	20.75	0.59195	20.554	20.236	20.828	-0.19577	0.010501	-0.00068715	NaN	21.96	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158180	+		34985	30106	24022	24073							0.1313701321331564
KSLIIKPF	8	Unmodified	_KSLIIKPF_					0	0	0			REV__ENST00000451388.1_1_7:65686613-65705388:+|nuORF	REV__ENST00000451388.1_1_7:65686613-65705388:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.310221	944.605889	-0.70323	-0.00033285	-3.4479	-0.0016319	-4.1512	-0.0019648	473.3084773961424	20.778	0.54615	20.555	20.315	20.861	-0.22344	0.011407	0.00047446	NaN	21.96	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162510	+		34986	30106	24022	24073							0.1313701321331564
KSLIRGTDPTL	11	Unmodified	_KSLIRGTDPTL_					0	0	0			REV__nc|ENSG00000180764|A2A3N6|PIPSL	REV__nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.90325927734375	3	400.903072	1199.68739	0.12434	4.9846E-05	-0.30532	-0.00012241	-0.18099	-7.2559E-05	400.9029265051892	51.324	1.1577	51.175	50.861	52.019	-0.14916					81	32	4	0	0	0	0.48544	1	5422	5422		77.288	0	1	6606300	+		34987	33425	24023	24074	40299	40299					0.09553044114591103
KSLIVKALL	9	Unmodified	_KSLIVKALL_					0	0	0			REV__ENSG00000010270|ENST00000009041|STARD3NL	REV__ENSG00000010270|ENST00000009041|STARD3NL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7795104980469	2	492.844428	983.674303	-0.98408	-0.000485	1.0211	0.00050326	0.037055	1.8263E-05	492.8448067517535	57.671	0.39426	57.494	57.281	57.675	-0.17775					17	9	2	0	0	0	0.024457	1	6306	6306		29.15	6.1071	1	219600	+		34988	19900	24024	24075	40300	40300					0.1818125779316233
KSLKVELI	8	Unmodified	_KSLKVELI_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2661437988281	2	465.305136	928.595718	-0.72047	-0.00033524	0.55185	0.00025678	-0.16862	-7.8458E-05	465.3053341411259	46.486	0.35958	46.284	46.081	46.441	-0.20226					15	9	2	0	0	0	0.027866	1	4441	4441		25.45	1.2474	1	212620			34989	10426	24025	24076	40301	40301					0.1285640548809397
KSLKVVTEP	9	Unmodified	_KSLKVVTEP_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant;ENST00000545078.1_1_12:124411346-124414067:+|nuORF;ENST00000492261.5_1_12:124409716-124414381:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7724609375	2	500.8055	999.596446	-0.11309	-5.6634E-05	-0.22676	-0.00011356	-0.33984	-0.0001702	500.8052510056321	55.81	0.84682	55.593	55.111	55.958	-0.21607					59	23	3	0	0	0	0.024397	1	5976	5976		31.53	3.6476	1	1188200			34990	18641	24026	24077	40302	40302					0.09663200137129024
KSLLDYEV	8	Unmodified	_KSLLDYEV_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7844543457031	2	483.760758	965.506963	0.38906	0.00018821	0.33665	0.00016286	0.72571	0.00035107	483.7605252241173	72.322	0.6778	72.332	72.058	72.736	0.0097733					46	16	4	0	0	0	0.027866	1	8770	8770		47.657	5.2612	1	732140			34991	3514	24027	24078	40303	40303					0.02282945457761798
KSLLEGSQRPQ	11	Unmodified	_KSLLEGSQRPQ_					0	0	0		ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000152076|Q96LY2|CCDC74B;ENST00000496704.1_1_2:130897130-130898075:-|nuORF;ENSG00000163040|ENST00000409856|CCDC74A;nc|ENSG00000163040|Q96AQ1|CCDC74A	ENSG00000152076|ENST00000409943|CCDC74B	ENSG00000152076|ENST00000409943|CCDC74B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.89862060546875	3	414.89821	1241.6728	0.31977	0.00013267	-0.1938	-8.0408E-05	0.12597	5.2266E-05	414.89822568759973	25.073	1.2709	25.154	24.779	26.049	0.08009					99	29	6	0	0	0	0.80896	1	1114	1114		57.149	7.1152	1	11103000			34992	6246	24028	24079	40304	40304					0.06162971966477926
KSLLPATPE	9	Unmodified	_KSLLPATPE_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.2869873046875	2	478.276575	954.538597	-0.0030704	-1.4685E-06	0.5441	0.00026023	0.54103	0.00025876	478.2762610784443	53.716	0.62981	53.811	53.592	54.222	0.095669					30	17	2	0	0	0	0.024397	1	5826	5826		31.53	10.583	1	1399800			34993	6595	24029	24080	40305	40305					0.05950938211697121
KSLLRALVN	9	Unmodified	_KSLLRALVN_					0	0	0		ENST00000509381.1_1_5:33951596-33982427:-|nuORF;nc|ENSG00000164175|Q9UMX9-2|SLC45A2;nc|ENSG00000164175|Q9UMX9-4|SLC45A2;nc|ENSG00000164175|Q9UMX9-3|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2	ENST00000509381.1_1_5:33951596-33982427:-|nuORF	ENST00000509381.1_1_5:33951596-33982427:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.2911071777344	2	507.326934	1012.63931	-0.37809	-0.00019181	-0.94036	-0.00047707	-1.3184	-0.00066888	507.3262135209252	27.666	0.33369	27.51	27.391	27.724	-0.15664					11	7	2	0	0	0	0.0245	1	1511	1511		22.58	3.4761	1	23592			34994	7233	24030	24081	40306	40306					0.1335001498522388
KSLLRVIY	8	Unmodified	_KSLLRVIY_					0	0	0			REV__nc|ENSG00000115009|P78556-2|CCL20	REV__nc|ENSG00000115009|P78556-2|CCL20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.30352783203125	2	496.318577	990.622602	-0.36334	-0.00018033	0.25199	0.00012507	-0.11135	-5.5265E-05	496.31864442029445	22.068	0.52381	21.877	21.613	22.137	-0.19072					22	10	3	0	0	0	0.027866	1	760	760		26.796	0	1	292630	+		34995	22160	24031	24082	40307	40307					0.12691514099265078
KSLLSMTDVS	10	Unmodified	_KSLLSMTDVS_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2911987304688	2	540.783907	1079.55326	-0.077103	-4.1696E-05	-0.97495	-0.00052724	-1.0521	-0.00056894	541.2858763407229	56.352	0.98653	56.136	55.633	56.619	-0.21607					47	25	4	0	0	0	0.03519	1	6103	6103		42.864	8.6917	1	442520	+		34996	25538	24032	24083	40308	40308					0.016666422975276873
KSLNEKTDA	9	Unmodified	_KSLNEKTDA_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2915954589844	2	503.264196	1004.51384	0.26116	0.00013143	-0.74621	-0.00037554	-0.48505	-0.00024411	503.7635566072688	74.433	0.88539	74.174	73.817	74.702	-0.25887					36	20	2	0	0	0	0.024511	1	9048	9048		19.104	0	1	413110	+		34997	21708	24033	24084	40309	40309					0.01176258338318803
KSLPICPLS	9	Unmodified	_KSLPICPLS_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27783203125	2	479.275521	956.536489	0.63902	0.00030627	3.1427	0.0015062	3.7817	0.0018125	479.2771210125938	81.156	2.9484	80.92	79.122	82.071	-0.23574					188	70	3	0	0	0	0.94809	1	9802	9802		29.15	1.2673	1	2107600	+		34998	25710	24034	24085	40310	40310					0.05648186202233774
KSLPILLLL	9	Unmodified	_KSLPILLLL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3;chr11:102842916-102843471|365|12.18|0.39|4.98|-|ENST00000524478|MMP3,MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.3542785644531	2	505.354628	1008.6947	-0.99082	-0.00050072	0.84106	0.00042503	-0.14977	-7.5684E-05	505.35494830298984	90.481	0.98271	90.326	89.824	90.806	-0.1552					76	23	5	0	0	0	0.10174	3	11066	11055;11066;11093		110.12	16.924	1	4655800			34999	6127	24035	24086	40311;40312;40313	40312					0.19070428452994292
KSLPILLLL	9	Unmodified	_KSLPILLLL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3;chr11:102842916-102843471|365|12.18|0.39|4.98|-|ENST00000524478|MMP3,MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3548889160156	2	505.354628	1008.6947	-0.76777	-0.000388	0.64308	0.00032498	-0.12469	-6.3014E-05	505.3548331176037	90.436	1.3949	90.311	89.889	91.284	-0.12512					86	33	5	0	0	0	0.03849	3	11059	11059;11069;11080		134.81	27.295	1	4242500			35000	6127	24035	24086	40314;40315;40316	40314					0.19070428452994292
KSLPILLLL	9	Unmodified	_KSLPILLLL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3;chr11:102842916-102843471|365|12.18|0.39|4.98|-|ENST00000524478|MMP3,MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.3545227050781	2	505.354628	1008.6947	0.06763	3.4177E-05	-0.38499	-0.00019456	-0.31736	-0.00016038	505.35433350021555	90.524	1.273	90.386	89.917	91.19	-0.13824					82	30	5	0	0	0	0.067814	4	11083	11049;11059;11070;11083		122.18	28.981	1	3948800			35001	6127	24035	24086	40317;40318;40319;40320	40320					0.19070428452994292
KSLPVAEIEK	10	Unmodified	_KSLPVAEIEK_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2425537109375	2	557.329339	1112.64412	-0.42156	-0.00023495	-0.21696	-0.00012092	-0.63852	-0.00035586	557.3292364222656	53.952	0.9819	53.755	53.422	54.404	-0.19739					38	28	2	0	0	0	0.03519	1	5640	5640		31.634	9.9485	1	2686300			35002	9688	24036	24087	40321	40321					0.0923085433732922
KSLQGSHQAEP	11	Unmodified	_KSLQGSHQAEP_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	591.2991333007812	2	591.299101	1180.58365	-1.3667	-0.00080811	1.1838	0.0007	-0.18284	-0.00010811	591.2997449196737	27.371	0.75773	27.202	26.892	27.649	-0.16816					49	17	5	0	0	0	0.76305	1	1505	1505		59.931	12.015	1	1921000			35003	3375	24037	24088	40322	40322					0.0005813700695398438
KSLREKLNK	9	Unmodified	_KSLREKLNK_					0	0	0		nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.264892578125	2	558.348397	1114.68224	-0.526	-0.00029369	3.489	0.0019481	2.963	0.0016544	558.350034620745	83.997	1.0703	83.997	83.393	84.463	0					37	24	2	0	0	0	0.024488	1	10500	10500		26.063	6.0329	1	49492			35004	3926	24038	24089	40323	40323					0.12948785042658528
KSLRILIEKVV	11	Unmodified	_KSLRILIEKVV_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.25482177734375	3	433.290379	1296.84931	0.68394	0.00029635	3.4946	0.0015142	4.1786	0.0018105	433.29158367704576	103.14	0.25105	102.97	102.91	103.16	-0.17034					6	5	2	0	0	0	0.024846	1	12831	12831		16.53	6.8837	1	190440	+		35005	24742	24039	24090	40324	40324					0.2127563286755958
KSLRRRQPI	9	Unmodified	_KSLRRRQPI_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.30615234375	2	577.367456	1152.72036	-1.5698	-0.00090636	4.3017	0.0024837	2.7319	0.0015773	577.3697732372865	75.961	0.93806	75.961	75.659	76.597	0					75	23	4	0	0	0	0.024511	1	9370	9370		32.812	7.2384	1	2476600	+		35006	36457	24040	24091	40325	40325					0.1501071574798516
KSLSEYNNF	9	Unmodified	_KSLSEYNNF_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.2638549804688	2	551.264196	1100.51384	-0.70081	-0.00038633	0.3981	0.00021946	-0.30271	-0.00016687	551.2642224812798	45.225	0.73269	45.126	44.828	45.561	-0.099449					38	20	2	0	0	0	0.40693	1	4261	4261		65.465	4.4934	1	3561600			35007	9030	24041	24092	40326	40326					-0.03239741661673179
KSLSKHILL	9	Unmodified	_KSLSKHILL_					0	0	0			REV__ENSG00000127329|ENST00000334414|PTPRB	REV__ENSG00000127329|ENST00000334414|PTPRB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7320556640625	2	519.837134	1037.65972	-0.66563	-0.00034602	0.14144	7.3525E-05	-0.52419	-0.0002725	519.8371299039163	56.51	0.69769	56.608	56.283	56.981	0.097897					35	19	2	0	0	0	0.022657	1	6288	6288		87.696	14.817	1	518150	+		35008	22927	24042	24093	40327	40327					0.1423918564505584
KSLSKHILL	9	Unmodified	_KSLSKHILL_					0	0	0			REV__ENSG00000127329|ENST00000334414|PTPRB	REV__ENSG00000127329|ENST00000334414|PTPRB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.837134	1037.65972	0.4834	0.00025129	0.1482	7.704E-05	0.6316	0.00032833	519.8366368148241	56.65	0.34498	56.447	56.327	56.672	-0.20209	-0.15956	-7.6418E-05	NaN	87.696	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88950	+		35009	22927	24042	24093							0.1423918564505584
KSLSPRTTSV	10	Unmodified	_KSLSPRTTSV_					0	0	0			REV__nc|ENSG00000203780|Q8TC84-3|FANK1	REV__nc|ENSG00000203780|Q8TC84-3|FANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3292236328125	2	538.308938	1074.60332	-0.1272	-6.8473E-05	-2.801	-0.0015078	-2.9282	-0.0015763	538.3068311809668	81.637	0.50551	81.444	81.213	81.718	-0.19333					24	11	3	0	0	0	0.03519	1	9846	9846		28.081	8.7215	1	151680	+		35010	37072	24043	24094	40328	40328					0.0690051301769472
KSLSRSTLRS	10	Unmodified	_KSLSRSTLRS_					0	0	0		ENST00000290846.8_1_22:46739262-46746193:+|nuORF;nc|ENSG00000100416|O75648-3|TRMU;nc|ENSG00000100416|O75648-4|TRMU	ENST00000290846.8_1_22:46739262-46746193:+|nuORF	ENST00000290846.8_1_22:46739262-46746193:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.287109375	2	567.833111	1133.65167	-0.78217	-0.00044414	4.1602	0.0023623	3.378	0.0019182	567.8352039738667	69.098	0.37698	68.836	68.666	69.043	-0.26165					14	8	2	0	0	0	0.03519	1	8003	8003		38.754	30.06	1	93792			35011	11788	24044	24095	40329	40329					0.09019006657604223
KSLTLDHPL	9	Unmodified	_KSLTLDHPL_					0	0	0			REV__ENST00000482803.1_1_3:9799225-9799596:-|nuORF	REV__ENST00000482803.1_1_3:9799225-9799596:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7724304199219	2	512.295299	1022.57605	-0.44281	-0.00022685	-0.10466	-5.3618E-05	-0.54748	-0.00028047	512.2951053929581	31.267	0.78048	31.081	30.824	31.604	-0.18503					42	19	3	0	0	0	0.024477	1	2130	2130		27.882	0	1	1106100	+		35012	33492	24045	24096	40330	40330					0.0656602947731244
KSLTSALTDW	10	Unmodified	_KSLTSALTDW_					0	0	0			REV__CON__P15497	REV__CON__P15497	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7822875976562	2	561.295496	1120.57644	-0.013442	-7.5447E-06	-2.2178	-0.0012448	-2.2312	-0.0012524	561.2947051346232	64.312	0.70959	64.119	63.84	64.549	-0.19243					28	17	2	0	0	0	0.03519	1	7368	7368		28.081	3.5623	1	578560	+	+	35013	19552	24046	24097	40331	40331					0.020974044065042108
KSLTVGVSLR	10	Unmodified	_KSLTVGVSLR_					0	0	0		ENST00000311549.10_1_13:27825489-27827914:+|nuORF	ENST00000311549.10_1_13:27825489-27827914:+|nuORF	ENST00000311549.10_1_13:27825489-27827914:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2986450195312	2	530.329673	1058.64479	-0.078678	-4.1725E-05	1.9428	0.0010303	1.8642	0.00098862	530.3311270163484	18.254	0.24633	18.122	17.957	18.203	-0.13147					9	4	3	0	0	0	0.03519	1	253	253		42.864	9.3487	1	13769			35014	12080	24047	24098	40332	40332					0.11781693777038527
KSLVKAGL	8	Unmodified	_KSLVKAGL_					0	0	0		ENSG00000151224|ENST00000372213|MAT1A;ENST00000485270.5_1_10:82033539-82034994:-|nuORF	ENSG00000151224|ENST00000372213|MAT1A	ENSG00000151224|ENST00000372213|MAT1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.18243408203125	2	408.271096	814.527639	0.091123	3.7203E-05	-0.23497	-9.593E-05	-0.14384	-5.8727E-05	408.2708026976184	25.484	0.41297	25.313	24.993	25.406	-0.17151					15	9	2	0	0	0	0.027866	1	1153	1153		11.511	0	1	181850			35015	6187	24048	24099	40333	40333					0.11295580628075186
KSMAKLIGSN	10	Unmodified	_KSMAKLIGSN_					0	0	0			REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF	REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2955322265625	2	524.794609	1047.57467	-0.79429	-0.00041684	0.34282	0.00017991	-0.45146	-0.00023692	525.7951397864776	44.705	0.57215	44.493	44.221	44.793	-0.21109					41	14	4	0	0	0	0.03519	1	4176	4176		36.318	17.214	1	839220	+		35016	32470	24049	24100	40334	40334					0.05278072116925614
KSMFGKIIVTK	11	Unmodified	_KSMFGKIIVTK_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.3798217773438	2	626.378309	1250.74206	-1.3509	-0.00084619	3.3984	0.0021287	2.0475	0.0012825	626.3803519046847	104.49	0.97306	104.36	104.02	105	-0.12928					86	31	4	0	0	0	1.0189	1	13004	13004		23.378	5.1158	1	2188000	+		35017	20082	24050	24101	40335	40335					0.1267233966166259
KSMFRHFL	8	Unmodified	_KSMFRHFL_					0	0	0		ENST00000295974.12_1_4:40815451-40815556:-|nuORF	ENST00000295974.12_1_4:40815451-40815556:-|nuORF	ENST00000295974.12_1_4:40815451-40815556:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2882690429688	2	533.286754	1064.55896	0.01314	7.0075E-06	1.8587	0.00099121	1.8718	0.00099821	533.2876870116213	25.352	0.80039	25.18	24.907	25.708	-0.17151					51	18	4	0	0	0	0.56067	1	1161	1161		79.939	0.22664	1	3385800			35018	11835	24051	24102	40336	40336					0.029258303905180583
KSMGMIRK	8	Unmodified	_KSMGMIRK_					0	0	0		ENSG00000100987|ENST00000376709|VSX1	ENSG00000100987|ENST00000376709|VSX1	ENSG00000100987|ENST00000376709|VSX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7724304199219	2	475.76734	949.520127	0.1417	6.7414E-05	0.76401	0.00036349	0.90571	0.00043091	475.7677260067032	22.848	0.83447	22.777	22.181	23.015	-0.071482					36	17	3	0	0	0	0.027866	1	851	851		21.96	7.095	1	184690			35019	2269	24052	24103	40337	40337					0.04334781764521267
KSMKLPQEQR	10	Unmodified	_KSMKLPQEQR_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.56378173828125	3	415.564173	1243.67069	-0.53296	-0.00022148	-1.8474	-0.00076773	-2.3804	-0.00098921	415.56327247309025	45.796	0.59678	45.594	45.259	45.855	-0.20226					42	16	4	0	0	0	1.1081	1	4356	4356		31.634	1.3165	1	2483400			35020	15514	24053	24104	40338	40338					0.058602199569804725
KSMKRGDQ	8	Unmodified	_KSMKRGDQ_					0	0	0			REV__ENSG00000173227|ENST00000527043|SYT12	REV__ENSG00000173227|ENST00000527043|SYT12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2010192871094	2	475.247826	948.481099	-0.19067	-9.0614E-05	1.4584	0.0006931	1.2677	0.00060248	475.2483821059764	39.652	1.3306	39.422	38.904	40.235	-0.2302					63	34	2	0	0	0	0.027866	1	3473	3473		16.473	3.514	1	825340	+		35021	26755	24054	24105	40339	40339					0.004797727344907798
KSMLVHSKI	9	Unmodified	_KSMLVHSKI_					0	0	0		ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7899169921875	2	521.807519	1041.60049	-0.95539	-0.00049853	-3.2817	-0.0017124	-4.2371	-0.002211	521.8053873278229	84.119	0.3046	84.119	83.91	84.215	0					13	6	3	0	0	0	0.024397	1	10539	10539		39.253	0	1	107430			35022	2331	24055	24106	40340	40340					0.08134966359216378
KSMNHLPLT	9	Unmodified	_KSMNHLPLT_					0	0	0		ENST00000333896.5_1_2:54849470-54849536:+|nuORF	ENST00000333896.5_1_2:54849470-54849536:+|nuORF	ENST00000333896.5_1_2:54849470-54849536:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.268798828125	2	520.781502	1039.54845	-0.35109	-0.00018284	1.1622	0.00060524	0.81109	0.0004224	521.2829008632456	75.48	0.16411	75.208	75.103	75.267	-0.27266					5	3	2	0	0	0	0.024257	1	8920	8920		67.494	16.158	1	21225			35023	12374	24056	24107	40341	40341					0.030258029454444113
KSMRTPTGLQ	10	Unmodified	_KSMRTPTGLQ_					0	0	0			REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF	REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7830810546875	2	559.802965	1117.59138	-0.52042	-0.00029133	1.0977	0.00061447	0.57723	0.00032314	559.8048919099485	30.949	0.24803	30.77	30.583	30.831	-0.17818					7	5	2	0	0	0	0.03519	1	2001	2001		49.536	8.7579	1	26787	+		35024	34126	24057	24108	40342	40342					0.037285730028543185
KSMSGRQKL	9	Unmodified	_KSMSGRQKL_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7911376953125	2	517.792401	1033.57025	0.60033	0.00031085	-0.70394	-0.00036449	-0.10361	-5.3648E-05	517.7919240929289	18.478	0.64302	18.321	18.099	18.742	-0.15637					25	12	3	0	0	0	0.2101	1	313	313		87.696	23.489	1	302000			35025	15459	24058	24109	40343	40343					0.05480607694016726
KSMSGRQKL	9	Unmodified	_KSMSGRQKL_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.792401	1033.57025	2.5424	0.0013165	4.0217	0.0020824	6.5641	0.0033989	517.7935175081436	18.211	0.19722	18.211	18.087	18.284	0	-0.076464	0.0047281	NaN	87.696	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10512			35026	15459	24058	24109							0.05480607694016726
KSMSGRQKL	9	Unmodified	_KSMSGRQKL_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	517.792401	1033.57025	0.41192	0.00021329	-0.61444	-0.00031815	-0.20252	-0.00010486	517.7919321434198	18.533	0.74222	18.329	18.113	18.856	-0.20371	0.042069	-7.304E-05	NaN	87.696	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212280			35027	15459	24058	24109							0.05480607694016726
KSMTPIKSP	9	Unmodified	_KSMTPIKSP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.26092529296875	2	494.778428	987.542302	0.79465	0.00039318	1.932	0.00095591	2.7267	0.0013491	494.7792980937604	85.308	1.5576	85.158	84.582	86.139	-0.14967					58	36	3	0	0	0	0.024418	1	10260	10260		37.812	9.9293	1	230110	+		35028	22942;36644	24059	24110	40344	40344					0.04803284713909761
KSMTPIKSP	9	Unmodified	_KSMTPIKSP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.778428	987.542302	1.2566	0.00062175	3.5102	0.0017368	4.7668	0.0023585	494.7798682746561	85.46	1.0833	85.46	84.958	86.042	0	0.15188	0.00027777	NaN	37.812	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693730	+		35029	22942;36644	24059	24110							0.04803284713909761
KSMTPIKSP	9	Unmodified	_KSMTPIKSP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.778428	987.542302	-0.30043	-0.00014865	4.5355	0.002244	4.235	0.0020954	494.78057551174885	85.404	1.1656	85.346	84.898	86.064	-0.05761	0.038108	0.0012924	NaN	37.812	42	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666470	+		35030	22942;36644	24059	24110							0.04803284713909761
KSMTPIKSP	9	Unmodified	_KSMTPIKSP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.778428	987.542302	0.039472	1.953E-05	0.88808	0.0004394	0.92755	0.00045893	494.77907625464854	85.538	1.3466	85.343	84.724	86.071	-0.19508	0.035125	-0.0023169	NaN	37.812	46	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232920	+		35031	22942;36644	24059	24110							0.04803284713909761
KSMTPIKSP	9	Unmodified	_KSMTPIKSP_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.778428	987.542302	0.39419	0.00019504	2.134	0.0010558	2.5282	0.0012509	494.7794961682752	85.324	1.4397	85.186	84.828	86.268	-0.13753	-0.12197	-0.001084	NaN	37.812	62	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257620	+		35032	22942;36644	24059	24110							0.04803284713909761
KSMYGVYNTF	10	Unmodified	_KSMYGVYNTF_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.2852172851562	2	605.284074	1208.5536	-1.1989	-0.00072566	4.0429	0.0024471	2.844	0.0017214	605.2863716977504	57.733	0.79837	57.555	57.06	57.859	-0.17775					62	20	4	0	0	0	0.37307	1	6278	6278		101.46	43.23	1	3666200			35033	10100	24060	24111	40345	40345					-0.04233937982621683
KSMYPPLDP	9	Unmodified	_KSMYPPLDP_					0	0	0		ENSG00000006042|ENST00000579849|TMEM98	ENSG00000006042|ENST00000579849|TMEM98	ENSG00000006042|ENST00000579849|TMEM98	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8241577148438	2	524.26261	1046.51067	-0.020068	-1.0521E-05	2.7712	0.0014529	2.7512	0.0014423	524.2643522715198	49.965	0.22291	49.86	49.671	49.894	-0.10558					8	5	2	0	0	0	0.024457	1	5053	5053		21.96	0	1	178670			35034	782	24061	24112	40346	40346					-0.010727080400329214
KSNFTKPVQ	9	Unmodified	_KSNFTKPVQ_					0	0	0			REV__ENST00000382159.7_1_19:2514815-2515019:-|nuORF	REV__ENST00000382159.7_1_19:2514815-2515019:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7896118164062	2	524.792924	1047.57129	-0.35552	-0.00018657	4.1628	0.0021846	3.8073	0.001998	524.7949535652552	76.378	0.94822	76.11	75.817	76.765	-0.26806					37	22	2	0	0	0	0.024473	1	9051	9051		33.922	7.2287	1	349930	+		35035	31537	24062	24113	40347	40347					0.049411453345555856
KSNIGHLCKL	10	Unmodified	_KSNIGHLCKL_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1;ENST00000437348.5_1_11:31115730-31149186:-|nuORF;ENST00000342355.8_1_11:30965860-31263019:-|nuORF	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.8117065429688	2	556.815876	1111.6172	-0.18519	-0.00010312	-2.2548	-0.0012555	-2.44	-0.0013586	557.3167727157486	21.499	1.1117	21.57	21.106	22.218	0.071487					71	22	5	0	0	0	0.88896	1	601	601		54.776	6.8168	1	552860			35036	8100	24063	24114	40348	40348					0.06585467245145082
KSNIKSLLL	9	Unmodified	_KSNIKSLLL_					0	0	0		nc|ENSG00000168228|Q9H5U6-2|ZCCHC4;ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4	nc|ENSG00000168228|Q9H5U6-2|ZCCHC4	nc|ENSG00000168228|Q9H5U6-2|ZCCHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2762145996094	2	508.329142	1014.64373	0.79987	0.0004066	-1.9558	-0.0009942	-1.1559	-0.0005876	508.3285157831992	71.265	0.51436	70.976	70.719	71.234	-0.28858					21	12	3	0	0	0	0.024541	1	8602	8602		18.262	0	1	295550			35037	7797	24064	24115	40349	40349					0.1369947940813745
KSNKLLYTF	9	Unmodified	_KSNKLLYTF_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2877807617188	2	557.318774	1112.623	-0.73432	-0.00040925	0.51084	0.0002847	-0.22348	-0.00012455	557.3188071386487	48.286	0.47115	48.188	47.966	48.438	-0.097553					20	12	2	0	0	0	0.024447	1	4772	4772		13.454	0	1	265140			35038	38151;4848	24065	24116	40350	40350					0.07118889028470221
KSNKRSEKS	9	Unmodified	_KSNKRSEKS_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;ENST00000585133.1_1_17:29162236-29196669:+|nuORF;ATAD5|p.Q1061Tfs*6|1|0.32|ENSG00000176208|chr17:30865741-30865742|-/CAAC|frameshift_variant;nc|ENSG00000176208|Q96QE3-2|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2978515625	2	532.296362	1062.57817	-0.20605	-0.00010968	3.6112	0.0019222	3.4052	0.0018126	532.2980854716619	34.583	0.86486	34.359	33.96	34.825	-0.22412					49	21	3	0	0	0	0.51687	1	2557	2557		58.23	5.2932	1	1341200			35039	8620	24066	24117	40351	40351					0.049384582151333234
KSNLQIHD	8	Unmodified	_KSNLQIHD_					0	0	0			REV__ENST00000561790.1_1_16:46660318-46660894:-|nuORF	REV__ENST00000561790.1_1_16:46660318-46660894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7524719238281	2	477.753798	953.493044	0.10819	5.169E-05	-0.46107	-0.00022028	-0.35288	-0.00016859	477.7533841038801	33.695	0.59232	33.752	33.461	34.054	0.056572					22	14	2	0	0	0	0.027866	1	2363	2363		34.173	0	1	184120	+		35040	26710	24067	24118	40352	40352					0.014437127493238222
KSNNLDQY	8	Unmodified	_KSNNLDQY_					0	0	0		ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.2345275878906	2	491.235439	980.456324	-1.0811	-0.00053106	-0.29585	-0.00014533	-1.3769	-0.00067639	491.2351832129831	40.391	1.268	40.242	39.933	41.201	-0.1497					67	33	3	0	0	0	0.53593	2	3486	3486;3523		82.241	4.9229	1	5006100			35041	4912	24068	24119	40353;40354	40353					-0.034685838672317004
KSNSAVAW	8	Unmodified	_KSNSAVAW_					0	0	0		nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	nc|ENSG00000277734|P01848|TRAC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	431.72454833984375	2	431.72451	861.434466	0.38484	0.00016614	0.28167	0.00012161	0.66651	0.00028775	431.72450220023586	36.247	0.97649	36.031	35.713	36.689	-0.21661					51	25	3	0	0	0	0.53523	1	2808	2808		82.305	2.3658	1	3891700			35042	18800	24069	24120	40355	40355					-0.0017934382515250036
KSNSLKPL	8	Unmodified	_KSNSLKPL_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.7713317871094	2	443.77146	885.528367	-0.032076	-1.4235E-05	0.063912	2.8362E-05	0.031836	1.4128E-05	443.77136080503095	32.423	0.77264	32.266	32.035	32.807	-0.15772					42	18	3	0	0	0	0.64735	1	2211	2211		71.877	3.0906	1	2717100			35043	9978	24070	24121	40356	40356					0.08102375277132978
KSNTLERSGVG	11	Unmodified	_KSNTLERSGVG_					0	0	0		ENSG00000182795|ENST00000359470|C1orf116;nc|ENSG00000182795|Q9BW04-2|SARG	ENSG00000182795|ENST00000359470|C1orf116	ENSG00000182795|ENST00000359470|C1orf116	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.2893676757812	2	574.306926	1146.5993	0.24686	0.00014177	-2.6189	-0.0015041	-2.3721	-0.0013623	574.305450592397	80.353	1.0676	80.115	79.58	80.647	-0.23784					37	25	2	0	0	0	0.024727	1	9623	9623		27.047	2.8446	1	116600			35044	9166	24071	24122	40357	40357					0.031864235239936534
KSPDHIQL	8	Unmodified	_KSPDHIQL_					0	0	0		ENST00000561790.1_1_16:46660318-46660894:-|nuORF;ENSG00000172780|ENST00000315150|RAB43	ENST00000561790.1_1_16:46660318-46660894:-|nuORF	ENST00000561790.1_1_16:46660318-46660894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.76690673828125	2	469.258717	936.50288	-0.015258	-7.1598E-06	0.64997	0.000305	0.63471	0.00029784	469.2587131704748	34.852	0.64799	34.903	34.479	35.127	0.050255					23	16	2	0	0	0	0.027866	1	2606	2606		21.96	6.3181	1	137690			35045	8307	24072	24123	40358	40358					0.0320890075471425
KSPDPIVNRW	10	Unmodified	_KSPDPIVNRW_					0	0	0			REV__ENSG00000038002|ENST00000264595|AGA	REV__ENSG00000038002|ENST00000264595|AGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	404.555895	1210.64586	0.47808	0.00019341	-0.74807	-0.00030264	-0.26999	-0.00010923	404.5553793627017	31.755	0.69215	31.515	31.259	31.951	-0.24006					42	16	4	0	0	0	0.03519	1	2177	2177		59.931	16.512	1	298210	+		35046	20073	24073	24124	40359	40359					0.04895908145931571
KSPDPIVNRW	10	Unmodified	_KSPDPIVNRW_					0	0	0			REV__ENSG00000038002|ENST00000264595|AGA	REV__ENSG00000038002|ENST00000264595|AGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	606.2628173828125	2	606.330205	1210.64586	-0.65999	-0.00040017	-0.3431	-0.00020803	-1.0031	-0.00060821	606.3299740707898	32.151	0.39006	31.914	31.74	32.13	-0.23667					17	8	3	0	0	0	0.03519	1	2195	2195		77.318	39.506	1	103770	+		35047	20073	24073	24124	40360	40360					0.04895908145931571
KSPDPIVNRW	10	Unmodified	_KSPDPIVNRW_					0	0	0			REV__ENSG00000038002|ENST00000264595|AGA	REV__ENSG00000038002|ENST00000264595|AGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	606.26318359375	2	606.330205	1210.64586	-0.35848	-0.00021736	-0.87589	-0.00053108	-1.2344	-0.00074844	606.3295476938213	31.704	0.92431	31.519	31.245	32.169	-0.18503					34	21	3	0	0	0	0.03519	1	2179	2179		115.49	27.798	1	137300	+		35048	20073	24073	24124	40361	40361					0.04895908145931571
KSPEFHLSANI	11	Unmodified	_KSPEFHLSANI_					0	0	0			REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	REV__nc|ENSG00000137809|Q9UKX5-2|ITGA11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	621.2823486328125	2	621.827495	1241.64044	0.37887	0.00023559	-0.1618	-0.00010061	0.21707	0.00013498	621.8274427965991	58.329	0.21458	58.091	57.962	58.177	-0.23776					6	4	2	0	0	0	0.02474	1	6375	6375		32.751	6.0576	1	165860	+		35049	23784	24074	24125	40362	40362					0.029281845634841375
KSPGKAGAP	9	Unmodified	_KSPGKAGAP_					0	0	0			REV__nc|ENSG00000184507|Q86Y26|NUTM1	REV__nc|ENSG00000184507|Q86Y26|NUTM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.2483825683594	2	406.734877	811.455202	1.3544	0.00055087	-2.2354	-0.00090922	-0.88104	-0.00035835	406.734667671143	87.67	0.35317	87.67	87.491	87.844	0					11	8	2	0	0	0	0.024457	1	11008	11008		15.642	0	1	274750	+		35050	27677	24075	24126	40363	40363					0.04193246554507368
KSPKLFLY	8	Unmodified	_KSPKLFLY_					0	0	0		nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7481689453125	2	498.299853	994.585153	-0.024301	-1.2109E-05	-2.5563	-0.0012738	-2.5806	-0.0012859	498.29866019309713	68.02	0.40275	67.782	67.589	67.992	-0.23814					12	9	2	0	0	0	0.027866	1	7858	7858		40.573	6.4001	1	107060			35051	18681	24076	24127	40364	40364					0.08764422833644403
KSPLAGDFIT	10	Unmodified	_KSPLAGDFIT_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.724365234375	2	524.787307	1047.56006	-0.1673	-8.7798E-05	-1.5758	-0.00082696	-1.7431	-0.00091476	525.2881443301409	89.03	0.71062	88.902	88.574	89.285	-0.12775					21	16	2	0	0	0	0.03519	1	10893	10893		39.253	1.4413	1	118870			35052	5024	24077	24128	40365	40365					0.038183232404207956
KSPLAPKLAL	10	Unmodified	_KSPLAPKLAL_					0	0	0			REV__ENST00000464591.1_1_1:112018506-112019490:+|nuORF	REV__ENST00000464591.1_1_1:112018506-112019490:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2642211914062	2	519.33951	1036.66447	-0.85749	-0.00044533	1.4433	0.00074954	0.58576	0.00030421	519.3397808572014	57.592	0.27121	57.414	57.242	57.514	-0.17775					9	6	2	0	0	0	0.03519	1	6298	6298		13.454	6.2607	1	54502	+		35053	32981	24078	24129	40366	40366					0.14760069787803332
KSPLCTFYF	9	Unmodified	_KSPLCTFYF_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2621459960938	2	553.272978	1104.5314	-0.9586	-0.00053037	4.1895	0.0023179	3.2309	0.0017876	553.2751398006408	44.302	0.78009	44.197	43.925	44.705	-0.10468					46	20	3	0	0	0	0.024523	1	4195	4195		21.96	7.095	1	901760			35054	10199	24079	24130	40367	40367					-0.016681176603697168
KSPLVPRS	8	Unmodified	_KSPLVPRS_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.7460632324219	2	442.271627	882.528701	-0.21728	-9.6097E-05	1.7147	0.00075838	1.4974	0.00066228	442.2712444130142	24.16	0.25589	23.985	23.873	24.129	-0.17484					7	5	2	0	0	0	0.027866	1	1025	1025		29.15	0	1	20670			35055	1512	24080	24131	40368	40368					0.08273794996989636
KSPLWPPKP	9	Unmodified	_KSPLWPPKP_					0	0	0		ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2745971679688	2	525.310752	1048.60695	-0.28676	-0.00015064	-4.2942	-0.0022558	-4.581	-0.0024064	525.3084966182338	34.525	0.64275	34.318	34.005	34.648	-0.20696					33	15	3	0	0	0	0.024344	1	2524	2524		45.972	16.802	1	1147700			35056	15631	24081	24132	40369	40369					0.08459227582216045
KSPLWPPKP	9	Unmodified	_KSPLWPPKP_					0	0	0		ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.310752	1048.60695	-1.0198	-0.00053572	-3.9913	-0.0020967	-5.0111	-0.0026324	525.308285018693	34.319	0.3937	34.319	34.05	34.444	0	0.061717	0.00014221	NaN	45.972	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150310			35057	15631	24081	24132							0.08459227582216045
KSPLWPPKP	9	Unmodified	_KSPLWPPKP_					0	0	0		ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.310752	1048.60695	-0.27297	-0.00014339	-5.0603	-0.0026582	-5.3333	-0.0028016	525.3081503631574	34.112	0.43174	34.107	33.829	34.261	-0.0045624	-0.14944	-0.00098094	NaN	45.972	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113120			35058	15631	24081	24132							0.08459227582216045
KSPLWPPKP	9	Unmodified	_KSPLWPPKP_					0	0	0		ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.310752	1048.60695	-0.53593	-0.00028153	-4.6722	-0.0024543	-5.2081	-0.0027359	525.3082457590182	34.101	0.44217	34.151	33.925	34.367	0.050255	-0.10544	-0.00057315	NaN	45.972	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144360			35059	15631	24081	24132							0.08459227582216045
KSPPDQPAV	9	Unmodified	_KSPPDQPAV_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.75079345703125	2	469.750724	937.486896	-0.84285	-0.00039593	0.78465	0.00036859	-0.058205	-2.7342E-05	469.7509259080835	30.43	1.8965	30.43	29.814	31.71	0					109	45	4	0	0	0	0.2508	1	1965	1965		82.241	13.756	1	1096100			35060	1843	24082	24133	40370	40370					0.01565194517809232
KSPPDQPAV	9	Unmodified	_KSPPDQPAV_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.7505187988281	2	469.750724	937.486896	-0.32192	-0.00015122	0.40478	0.00019015	0.082867	3.8927E-05	469.7506951610827	30.099	1.8881	30.173	29.562	31.45	0.074316					114	45	4	0	0	0	0.37611	2	1849	1849;1874		67.494	6.5217	1	1037000			35061	1843	24082	24133	40371;40372	40371					0.01565194517809232
KSPPLIFLF	9	Unmodified	_KSPPLIFLF_					0	0	0			REV__ENST00000262741.9_2_1:46597926-46598223:-|nuORF	REV__ENST00000262741.9_2_1:46597926-46598223:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.32080078125	2	531.323328	1060.6321	-0.28047	-0.00014902	-3.909	-0.002077	-4.1895	-0.002226	531.3211103492738	43.169	0.87806	43.057	42.775	43.653	-0.11253					69	23	4	0	0	0	0.22754	1	3941	3941		85.359	4.9049	1	5055300	+		35062	29672	24083	24134	40373	40373					0.10421282384800179
KSPPLIFLF	9	Unmodified	_KSPPLIFLF_					0	0	0			REV__ENST00000262741.9_2_1:46597926-46598223:-|nuORF	REV__ENST00000262741.9_2_1:46597926-46598223:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3175048828125	2	531.323328	1060.6321	-0.94595	-0.00050261	-3.3574	-0.0017839	-4.3034	-0.0022865	531.3214326110068	43.355	0.9182	43.117	42.8	43.718	-0.23737					68	24	4	0	0	0	0.43973	1	3946	3946		63.306	1.1989	1	4966900	+		35063	29672	24083	24134	40374	40374					0.10421282384800179
KSPSLQPQEL	10	Unmodified	_KSPSLQPQEL_					0	0	0		ENST00000273411.2_1_3:134070904-134075258:-|nuORF	ENST00000273411.2_1_3:134070904-134075258:-|nuORF	ENST00000273411.2_1_3:134070904-134075258:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.7604370117188	2	563.808771	1125.60299	-0.34975	-0.00019719	-0.36492	-0.00020574	-0.71467	-0.00040294	563.8085190935847	45.506	0.4753	45.407	45.154	45.63	-0.099445					20	13	2	0	0	0	0.03519	1	4291	4291		19.104	0	1	392650			35064	11669	24084	24135	40375	40375					0.0452109329785344
KSPSLQPQEL	10	Unmodified	_KSPSLQPQEL_					0	0	0		ENST00000273411.2_1_3:134070904-134075258:-|nuORF	ENST00000273411.2_1_3:134070904-134075258:-|nuORF	ENST00000273411.2_1_3:134070904-134075258:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.7615966796875	2	563.808771	1125.60299	-0.066234	-3.7343E-05	-1.4125	-0.00079638	-1.4787	-0.00083372	563.8080549076243	45.638	0.34315	45.386	45.223	45.566	-0.25252					16	9	2	0	0	0	0.03519	1	4315	4315		30.318	0	1	170830			35065	11669	24084	24135	40376	40376					0.0452109329785344
KSPSTFLGY	9	Unmodified	_KSPSTFLGY_					0	0	0		ENST00000525792.5_1_11:47746320-47755666:-|nuORF	ENST00000525792.5_1_11:47746320-47755666:-|nuORF	ENST00000525792.5_1_11:47746320-47755666:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7377624511719	2	500.260925	998.507297	-0.02069	-1.0351E-05	-3.3627	-0.0016822	-3.3834	-0.0016926	500.2590536963211	34.203	0.45807	33.978	33.721	34.179	-0.22412					15	11	2	0	0	0	0.024477	1	2466	2466		20.947	5.3051	1	201420			35066	16102	24085	24136	40377	40377					0.007983651776157785
KSPSTFLGY	9	Unmodified	_KSPSTFLGY_					0	0	0		ENST00000525792.5_1_11:47746320-47755666:-|nuORF	ENST00000525792.5_1_11:47746320-47755666:-|nuORF	ENST00000525792.5_1_11:47746320-47755666:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.260925	998.507297	-0.27156	-0.00013585	-2.925	-0.0014632	-3.1965	-0.0015991	500.2593498414164	34.183	0.49156	33.976	33.71	34.201	-0.20695	-0.0057923	3.3011E-05	NaN	32.812	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250700			35067	16102	24085	24136							0.007983651776157785
KSPTITCLV	9	Unmodified	_KSPTITCLV_					0	0	0		ENST00000521393.1_1_14:106188133-106188816:-|nuORF;nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE	ENST00000521393.1_1_14:106188133-106188816:-|nuORF	ENST00000521393.1_1_14:106188133-106188816:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2921447753906	2	481.272978	960.531403	0.49026	0.00023595	-0.33466	-0.00016107	0.15559	7.4883E-05	481.27270937188	32.004	0.64435	31.767	31.529	32.173	-0.23667					28	14	3	0	0	0	0.024477	1	2161	2161		35.618	5.1146	1	527290			35068	16003	24086	24137	40378	40378					0.04955882339618256
KSPVLQTCFS	10	Unmodified	_KSPVLQTCFS_					0	0	0		AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant	AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant	AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.2855834960938	2	555.286617	1108.55868	-0.36221	-0.00020113	-1.2937	-0.0007184	-1.656	-0.00091953	555.2855637201369	43.148	0.59179	42.911	42.759	43.351	-0.23737					19	15	2	0	0	0	0.03519	1	3985	3985		36.447	14.761	1	179860			35069	84	24087	24138	40379	40379					0.00874365880008554
KSQAATKNL	9	Unmodified	_KSQAATKNL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7681884765625	2	480.777274	959.539994	-0.18465	-8.8776E-05	3.7345	0.0017955	3.5498	0.0017067	480.7791013035004	36.631	0.12041	36.589	36.529	36.649	-0.042454					4	2	2	0	0	0	0.024209	1	2917	2917		31.53	0	1	44335			35070	2990	24088	24139	40380	40380					0.058605723004689025
KSQAFSLIL	9	Unmodified	_KSQAFSLIL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2550964355469	2	503.800217	1005.58588	-0.77817	-0.00039204	-0.13267	-6.6839E-05	-0.91084	-0.00045888	503.8003293871938	38.727	0.53585	38.505	38.187	38.722	-0.22148					40	13	4	0	0	0	0.024381	1	3235	3235		21.96	0	1	563430			35071	9637	24089	24140	40381	40381					0.08331217482725606
KSQAVSLVW	9	Unmodified	_KSQAVSLVW_					0	0	0			REV__nc|ENSG00000136099|O95206-2|PCDH8	REV__nc|ENSG00000136099|O95206-2|PCDH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2501525878906	2	509.290017	1016.56548	-0.14702	-7.4875E-05	-0.33676	-0.00017151	-0.48378	-0.00024639	509.2898234254516	52.228	1.026	52.044	51.449	52.475	-0.18404					54	26	3	0	0	0	0.024405	1	5459	5459		27.882	0	1	1449400	+		35072	23624	24090	24141	40382	40382					0.057860468229023354
KSQEELKR	8	Unmodified	_KSQEELKR_					0	0	0			REV__RASEF|p.V263I|1|0.23|ENSG00000165105|chr9:83012490-83012490|C/T|missense_variant	REV__RASEF|p.V263I|1|0.23|ENSG00000165105|chr9:83012490-83012490|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.7960205078125	2	509.288005	1016.56146	0.12825	6.5314E-05	3.7246	0.0018969	3.8528	0.0019622	509.2897794589961	102.59	0.2162	102.42	102.29	102.5	-0.17178					6	4	2	0	0	0	0.027866	1	12735	12735		34.173	1.3601	1	34159	+		35073	25839	24091	24142	40383	40383					0.05383957329195255
KSQEELKR	8	Unmodified	_KSQEELKR_					0	0	0			REV__RASEF|p.V263I|1|0.23|ENSG00000165105|chr9:83012490-83012490|C/T|missense_variant	REV__RASEF|p.V263I|1|0.23|ENSG00000165105|chr9:83012490-83012490|C/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	509.288005	1016.56146	0.063563	3.2372E-05	1.7138	0.00087282	1.7774	0.00090519	509.7889138681513	102.75	0.98817	102.74	102.24	103.23	-0.0046005	0.16309	-0.0016439	NaN	34.173	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675910	+		35074	25839	24091	24142							0.05383957329195255
KSQIMSLSHS	10	Unmodified	_KSQIMSLSHS_					0	0	0		ENST00000497878.5_1_19:2988043-2994999:+|nuORF;nc|ENSG00000104953|Q9H808-2|TLE6;ENSG00000104953|ENST00000246112|TLE6	ENST00000497878.5_1_19:2988043-2994999:+|nuORF	ENST00000497878.5_1_19:2988043-2994999:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.3145141601562	2	559.287148	1116.55974	-0.56462	-0.00031579	0.82497	0.00046139	0.26035	0.00014561	559.287277061137	64.688	0.51698	64.486	64.301	64.818	-0.20254					19	12	2	0	0	0	0.03519	1	7388	7388		13.454	0	1	170260			35075	2623	24092	24143	40384	40384					0.0061258024893504626
KSQIQKLNR	9	Unmodified	_KSQIQKLNR_					0	0	0			REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2854614257812	2	557.838197	1113.66184	-1.0979	-0.00061245	0.41188	0.00022976	-0.68602	-0.00038269	557.8383130171592	23.87	0.65005	23.823	23.614	24.264	-0.047148					26	14	3	0	0	0	0.024418	1	1025	1025		45.972	19.279	1	155210	+		35076	36949	24093	24144	40385	40385					0.10955614382851309
KSQIQKLNR	9	Unmodified	_KSQIQKLNR_					0	0	0			REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.838197	1113.66184	0.044192	2.4652E-05	-0.2402	-0.00013399	-0.19601	-0.00010934	557.8379242657822	23.807	0.76045	23.883	23.647	24.408	0.076241	0.01192	-0.0001903	NaN	45.972	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144550	+		35077	36949	24093	24144							0.10955614382851309
KSQLLSARAGC	11	Unmodified	_KSQLLSARAGC_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.2540893554688	2	567.308415	1132.60228	-0.49732	-0.00028214	0.39147	0.00022208	-0.10586	-6.0054E-05	567.3078838399068	30.623	1.0286	30.444	30.04	31.069	-0.17817					37	24	2	0	0	0	0.024736	1	2009	2009		22.58	0	1	87975	+		35078	20738	24094	24145	40386	40386					0.04127975377150506
KSQLPLKKP	9	Unmodified	_KSQLPLKKP_					0	0	0		sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1	sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1	sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.766845703125	2	519.837134	1037.65972	0.31891	0.00016578	-1.313	-0.00068252	-0.99404	-0.00051674	519.8364244644162	48.102	0.48378	47.915	47.673	48.157	-0.18684					19	12	2	0	0	0	0.024323	1	4732	4732		44.117	14.967	1	151270			35079	37939	24095	24146	40387	40387					0.14239185645033103
KSQPNWTTV	9	Unmodified	_KSQPNWTTV_					0	0	0		CST5|p.L102Wfs*12|1|0.14|ENSG00000170367|chr20:23877545-23877545|A/-|frameshift_variant	CST5|p.L102Wfs*12|1|0.14|ENSG00000170367|chr20:23877545-23877545|A/-|frameshift_variant	CST5|p.L102Wfs*12|1|0.14|ENSG00000170367|chr20:23877545-23877545|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7462768554688	2	530.774731	1059.53491	-0.072482	-3.8472E-05	-0.32414	-0.00017205	-0.39663	-0.00021052	530.7743381073653	32.628	0.53541	32.435	32.162	32.697	-0.19261					22	12	2	0	0	0	0.024495	1	2267	2267		26.693	5.746	1	136290			35080	595	24096	24147	40388	40388					0.007522684378500344
KSQRSGKKAS	10	Unmodified	_KSQRSGKKAS_					0	0	0		ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.296630859375	2	538.812179	1075.60981	-0.47169	-0.00025415	-0.27186	-0.00014648	-0.74355	-0.00040064	539.3152859412204	65.845	0.12486	65.604	65.5	65.625	-0.24145					4	2	2	0	0	0	0.03519	1	7522	7522		9.1829	0	1	31565			35081	4603	24097	24148	40389	40389					0.0750245096908202
KSQTCPLMW	9	Unmodified	_KSQTCPLMW_					0	0	0		ENST00000492703.1_1_20:35401984-35402095:-|nuORF	ENST00000492703.1_1_20:35401984-35402095:-|nuORF	ENST00000492703.1_1_20:35401984-35402095:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2597045898438	2	547.262087	1092.50962	-0.81002	-0.00044329	3.1332	0.0017147	2.3232	0.0012714	547.2634335480273	52.37	0.73023	52.251	51.869	52.599	-0.11875					39	18	3	0	0	0	0.42604	1	5438	5438		64.207	2.516	1	742260			35082	15487	24098	24149	40390	40390					-0.03293245680583823
KSQVSRTR	8	Unmodified	_KSQVSRTR_					0	0	0		ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF;nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF	ENSG00000100395|ENST00000216237|L3MBTL2	ENSG00000100395|ENST00000216237|L3MBTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.30712890625	2	481.280515	960.546476	0.085223	4.1016E-05	2.3595	0.0011356	2.4447	0.0011766	481.2814428477561	47.8	0.48108	47.703	47.485	47.966	-0.097549					26	12	3	0	0	0	0.027866	1	4687	4687		14.865	0	1	265880			35083	2195	24099	24150	40391	40391					0.06462510251856202
KSRANMMY	8	Unmodified	_KSRANMMY_					0	0	0			REV__ENST00000557054.1_1_14:20923524-20925664:+|nuORF	REV__ENST00000557054.1_1_14:20923524-20925664:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7685546875	2	500.73878	999.463006	-0.62694	-0.00031393	-2.7712	-0.0013877	-3.3982	-0.0017016	500.73806343474917	39.25	0.14674	39.027	38.926	39.073	-0.22311					5	3	2	0	0	0	0.027866	1	3292	3292		21.702	0	1	77294	+		35084	21155	24100	24151	40392	40392					-0.03674685511862208
KSRARRVL	8	Unmodified	_KSRARRVL_					0	0	0			REV__ENSG00000273706|ENST00000614239|LHX1	REV__ENSG00000273706|ENST00000614239|LHX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3059997558594	2	493.322517	984.630481	0.0090683	4.4736E-06	-2.3908	-0.0011795	-2.3818	-0.001175	493.321371901343	69.149	0.30312	69.149	68.898	69.202	0					11	7	2	0	0	0	0.027866	1	8292	8292		24.203	4.8428	1	226680	+		35085	29176	24101	24152	40393	40393					0.13755086139406103
KSREDQLRHW	10	Unmodified	_KSREDQLRHW_					0	0	0		ENST00000497403.5_1_2:10101229-10104576:+|nuORF;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.23760986328125	3	452.237337	1353.69018	-0.14695	-6.6455E-05	0.016883	7.635E-06	-0.13006	-5.882E-05	452.2373297828072	27.24	0.98144	26.998	26.571	27.553	-0.24217					65	22	4	0	0	0	1.0344	1	1494	1494		41.427	8.3872	1	2208300			35086	4781	24102	24153	40394	40394					0.027483122921239556
KSREDQLRHW	10	Unmodified	_KSREDQLRHW_					0	0	0		ENST00000497403.5_1_2:10101229-10104576:+|nuORF;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2370910644531	3	452.237337	1353.69018	-0.4947	-0.00022372	0.28158	0.00012734	-0.21312	-9.6381E-05	452.2374794909494	27.14	1.1703	26.972	26.638	27.808	-0.16816					75	27	4	0	0	0	0.99657	1	1475	1475		46.457	4.2142	1	1655700			35087	4781	24102	24153	40395	40395					0.027483122921239556
KSREDQLRHW	10	Unmodified	_KSREDQLRHW_					0	0	0		ENST00000497403.5_1_2:10101229-10104576:+|nuORF;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2372741699219	3	452.237337	1353.69018	-0.37366	-0.00016898	-0.0025348	-1.1463E-06	-0.37619	-0.00017013	452.2373812088006	27.144	1.4921	26.988	26.464	27.956	-0.15664					95	35	5	0	0	0	0.78327	2	1458	1435;1458		61.765	17.125	1	1700200			35088	4781	24102	24153	40396;40397	40397					0.027483122921239556
KSREFNLMY	9	Unmodified	_KSREFNLMY_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;IRF6|p.L87F|1|0.33|ENSG00000117595|chr1:209796468-209796468|G/A|missense_variant	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.2959594726562	2	594.297516	1186.58048	-1.3791	-0.00081959	1.0702	0.00063602	-0.30889	-0.00018357	594.2979529857967	48.131	0.76749	47.855	47.595	48.362	-0.27598					53	20	4	0	0	0	0.247	1	4747	4747		82.75	0.50997	1	2086200			35089	3643	24103	24154	40398	40398					-0.005348293713950625
KSREFNLMY	9	Unmodified	_KSREFNLMY_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;IRF6|p.L87F|1|0.33|ENSG00000117595|chr1:209796468-209796468|G/A|missense_variant	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	594.297516	1186.58048	-0.1821	-0.00010822	-0.037611	-2.2352E-05	-0.21972	-0.00013058	594.2973234021804	47.918	0.83946	47.732	47.423	48.263	-0.18684	-0.038421	-0.00079275	NaN	82.75	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2346000			35090	3643	24103	24154							-0.005348293713950625
KSRGIGTVTF	10	Unmodified	_KSRGIGTVTF_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.E252Q|1|0.05|ENSG00000099783|chr19:8466358-8466358|G/C|missense_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.3064575195312	2	533.306198	1064.59784	-0.47349	-0.00025251	-0.045955	-2.4508E-05	-0.51944	-0.00027702	533.3060858320548	41.25	0.83862	41.114	40.791	41.629	-0.13553					58	21	4	0	0	0	0.56936	3	3625	3625;3634;3649		80.455	21.673	1	4067400			35091	2081	24104	24155	40399;40400;40401	40399					0.06812834225888764
KSRGIGTVTF	10	Unmodified	_KSRGIGTVTF_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.E252Q|1|0.05|ENSG00000099783|chr19:8466358-8466358|G/C|missense_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.3063354492188	2	533.306198	1064.59784	-0.71233	-0.00037989	0.03015	1.6079E-05	-0.68218	-0.00036381	533.3062120489998	41.432	0.88981	41.204	40.847	41.737	-0.2278					70	22	5	0	0	0	0.52765	3	3666	3642;3653;3666		85.161	20.954	1	3480600			35092	2081	24104	24155	40402;40403;40404	40404					0.06812834225888764
KSRGIGTVTF	10	Unmodified	_KSRGIGTVTF_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;HNRNPM|p.E252Q|1|0.05|ENSG00000099783|chr19:8466358-8466358|G/C|missense_variant	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.3063354492188	2	533.306198	1064.59784	-0.80341	-0.00042847	0.16752	8.9341E-05	-0.63589	-0.00033913	533.3061832424233	41.481	0.76481	41.251	40.886	41.651	-0.23029					60	19	4	0	0	0	0.50091	3	3664	3643;3653;3664		88.177	28.059	1	3907100			35093	2081	24104	24155	40405;40406;40407	40407					0.06812834225888764
KSRHFLSN	8	Unmodified	_KSRHFLSN_					0	0	0			REV__nc|ENSG00000095110|Q8N323-2|NXPE1	REV__nc|ENSG00000095110|Q8N323-2|NXPE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2815246582031	2	494.769783	987.525013	-0.11274	-5.5781E-05	3.3248	0.001645	3.212	0.0015892	494.7715619783562	24.54	1.3699	24.365	23.873	25.243	-0.17484					68	31	4	0	0	0	0.027866	1	1129	1129		17.365	0	1	415050	+		35094	20958	24105	24156	40408	40408					0.030751252231198123
KSRIFYLSV	9	Unmodified	_KSRIFYLSV_					0	0	0		AKAP11|p.H1634Y|1|0.25|ENSG00000023516|chr13:42303646-42303646|C/T|missense_variant	AKAP11|p.H1634Y|1|0.25|ENSG00000023516|chr13:42303646-42303646|C/T|missense_variant	AKAP11|p.H1634Y|1|0.25|ENSG00000023516|chr13:42303646-42303646|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2688598632812	2	556.826766	1111.63898	-0.78317	-0.00043609	-1.4044	-0.00078198	-2.1875	-0.0012181	557.327306678714	48.833	0.21628	48.553	48.465	48.682	-0.27977					6	5	2	0	0	0	0.024344	1	4873	4873		54.776	22.821	1	123250			35095	57	24106	24157	40409	40409					0.08762595265375239
KSRIFYLSV	9	Unmodified	_KSRIFYLSV_					0	0	0		AKAP11|p.H1634Y|1|0.25|ENSG00000023516|chr13:42303646-42303646|C/T|missense_variant	AKAP11|p.H1634Y|1|0.25|ENSG00000023516|chr13:42303646-42303646|C/T|missense_variant	AKAP11|p.H1634Y|1|0.25|ENSG00000023516|chr13:42303646-42303646|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	556.826766	1111.63898	-0.39122	-0.00021784	-0.71318	-0.00039712	-1.1044	-0.00061496	557.3280326485109	48.674	0.25782	48.492	48.373	48.631	-0.18206	-0.030612	0.00042172	NaN	45.972	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99943			35096	57	24106	24157							0.08762595265375239
KSRKQLGR	8	Unmodified	_KSRKQLGR_					0	0	0		ENSG00000182004|ENST00000414487|SNRPE	ENSG00000182004|ENST00000414487|SNRPE	ENSG00000182004|ENST00000414487|SNRPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7608947753906	2	486.8067	971.598846	-0.63631	-0.00030976	2.9489	0.0014356	2.3126	0.0011258	486.80789136137776	25.828	0.37638	25.659	25.451	25.828	-0.16917					15	8	2	0	0	0	0.027866	1	1205	1205		18.324	9.5021	1	173880			35097	9089	24107	24158	40410	40410					0.11191093385457407
KSRKRNPK	8	Unmodified	_KSRKRNPK_					0	0	0		NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant;nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	NFAT5|p.S1065Wfs*80|1|0.27|ENSG00000102908|chr16:69693073-69693082|CTCATTCACA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7142639160156	2	507.319974	1012.6254	-0.03574	-1.8131E-05	-3.0485	-0.0015466	-3.0843	-0.0015647	507.31848368490563	35.119	0.43564	34.904	34.589	35.024	-0.21555					13	10	2	0	0	0	0.027866	1	2604	2604		3.1592	0	1	179600			35098	2443	24108	24159	40411	40411					0.11958782276781221
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8679809570312	2	619.870028	1237.7255	-0.22332	-0.00013843	-0.49603	-0.00030747	-0.71934	-0.0004459	619.8694138737308	104.71	0.52811	104.71	104.42	104.95	0					38	15	4	0	0	0	1.1131	1	13445	13445		17.468	0	1	233400	+		35099	24238	24109	24160	40412	40412					0.11614974819940471
KSRLFRPYSD	10	Unmodified	_KSRLFRPYSD_					0	0	0			REV__ENSG00000135824|ENST00000515211|RGS8	REV__ENSG00000135824|ENST00000515211|RGS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.56219482421875	3	423.56305	1267.66732	0.0077705	3.2913E-06	-2.1685	-0.00091848	-2.1607	-0.00091519	423.56215274094274	17.498	1.8384	17.291	17.014	18.853	-0.20669					73	36	4	0	0	0	1.0909	1	203	203		33.922	11.342	1	846100	+		35100	23582	24110	24161	40413	40413					0.04419293174669292
KSRLHIVY	8	Unmodified	_KSRLHIVY_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.280029296875	2	508.306001	1014.59745	0.091971	4.6749E-05	-1.5584	-0.00079215	-1.4664	-0.0007454	508.30516844618234	48.07	0.22843	47.884	47.749	47.978	-0.18684					7	5	2	0	0	0	0.027866	1	4749	4749		21.702	0	1	48636	+		35101	19162	24111	24162	40414	40414					0.09073459296701003
KSRLICIIC	9	Unmodified	_KSRLICIIC_					0	0	0		ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7586059570312	2	524.803922	1047.59329	0.24226	0.00012714	0.4035	0.00021176	0.64575	0.00033889	524.8028809933813	57.106	0.91503	56.904	56.443	57.358	-0.20208					31	24	2	0	0	0	0.024397	1	6269	6269		39.253	2.0937	1	224110			35102	17214	24112	24163	40415	40415					0.07139910487126144
KSRLICIIC	9	Unmodified	_KSRLICIIC_					0	0	0		ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.803922	1047.59329	-0.97619	-0.00051231	3.4995	0.0018365	2.5233	0.0013242	524.8055827021823	56.825	0.6505	56.825	56.46	57.111	0	-0.039104	0.00045063	NaN	31.53	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1945800			35103	17214	24112	24163							0.07139910487126144
KSRLICIIC	9	Unmodified	_KSRLICIIC_					0	0	0		ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.803922	1047.59329	-0.42328	-0.00022214	3.0029	0.0015759	2.5796	0.0013538	524.8053682547227	56.983	0.62447	56.818	56.497	57.122	-0.16431	-0.045867	-7.0633E-05	NaN	31.53	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1742200			35104	17214	24112	24163							0.07139910487126144
KSRLICIIC	9	Unmodified	_KSRLICIIC_					0	0	0		ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	ENST00000584747.5_1_10:75475775-75475841:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.803922	1047.59329	-0.20707	-0.00010867	1.7234	0.00090444	1.5163	0.00079577	524.8042950141603	56.692	0.92415	56.79	56.435	57.359	0.097893	-0.074496	-0.0014136	NaN	31.53	66	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1903200			35105	17214	24112	24163							0.07139910487126144
KSRLQIVK	8	Unmodified	_KSRLQIVK_					0	0	0			REV__DCC|p.E278K|1|0.46|ENSG00000187323|chr18:52923841-52923841|G/A|missense_variant	REV__DCC|p.E278K|1|0.46|ENSG00000187323|chr18:52923841-52923841|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2694396972656	2	486.321651	970.62875	-0.14453	-7.0287E-05	-0.89357	-0.00043456	-1.0381	-0.00050485	486.3215817350223	53.576	0.35386	53.576	53.337	53.691	0					12	9	2	0	0	0	0.027866	1	5812	5812		21.96	0	1	101800	+		35106	19654	24113	24164	40416	40416					0.14226032330805083
KSRMKMSH	8	Unmodified	_KSRMKMSH_					0	0	0		ENST00000319653.13_1_1:240637457-240637514:+|nuORF	ENST00000319653.13_1_1:240637457-240637514:+|nuORF	ENST00000319653.13_1_1:240637457-240637514:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7798767089844	2	502.760046	1003.50554	-0.27983	-0.00014068	1.8363	0.00092321	1.5565	0.00078253	502.7609746240054	53.117	0.39026	53.213	53.017	53.407	0.095669					20	10	2	0	0	0	0.027866	1	5645	5645		26.796	0	1	91310			35107	12186	24114	24165	40417	40417					0.003927096163693022
KSRNKHHR	8	Unmodified	_KSRNKHHR_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2659301757812	2	531.805023	1061.59549	-1.2511	-0.00066536	2.9292	0.0015577	1.678	0.00089238	531.8069128279717	33.541	0.43699	33.375	33.156	33.593	-0.16565					21	10	3	0	0	0	0.027866	1	2413	2413		10.866	2.1719	1	167780	+		35108	24874	24115	24166	40418	40418					0.06715843331448923
KSRNKHHR	8	Unmodified	_KSRNKHHR_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.805023	1061.59549	-0.3103	-0.00016502	2.1178	0.0011262	1.8075	0.00096121	531.8061992750228	33.621	0.40018	33.39	33.193	33.593	-0.23107	0.019865	-0.00079882	NaN	6.3127	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197520	+		35109	24874	24115	24166							0.06715843331448923
KSRNKHHR	8	Unmodified	_KSRNKHHR_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.805023	1061.59549	-0.86835	-0.00046179	3.5623	0.0018945	2.694	0.0014327	531.8067436753909	33.545	0.30865	33.345	33.209	33.517	-0.20019	-0.025205	0.00073766	NaN	6.3127	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205280	+		35110	24874	24115	24166							0.06715843331448923
KSRPARKR	8	Unmodified	_KSRPARKR_					0	0	0			REV__ENSG00000166278|ENST00000299367|C2	REV__ENSG00000166278|ENST00000299367|C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2184143066406	2	499.820141	997.62573	-0.59972	-0.00029975	3.7324	0.0018655	3.1327	0.0015658	499.82181157363846	32.46	0.28162	32.303	32.121	32.403	-0.15772					10	6	2	0	0	0	0.027866	1	2207	2207		47.916	3.7988	1	74435	+		35111	25997	24116	24167	40419	40419					0.1268220199665393
KSRPVDPSVP	10	Unmodified	_KSRPVDPSVP_					0	0	0		ENST00000579482.5_1_17:72858941-72860228:-|nuORF;nc|ENSG00000161513|P22570-4|FDXR;nc|ENSG00000161513|P22570-6|FDXR;nc|ENSG00000161513|P22570-5|FDXR;ENST00000577509.5_1_17:72858941-72868963:-|nuORF;nc|ENSG00000161513|P22570|FDXR;ENSG00000161513|ENST00000293195|FDXR;nc|ENSG00000161513|P22570-2|FDXR;nc|ENSG00000161513|P22570-7|FDXR;nc|ENSG00000161513|P22570-3|FDXR	ENST00000579482.5_1_17:72858941-72860228:-|nuORF	ENST00000579482.5_1_17:72858941-72860228:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.3031616210938	2	541.303655	1080.59276	-1.3288	-0.0007193	0.31628	0.0001712	-1.0125	-0.0005481	541.3037392453896	47.103	0.95069	47.163	46.88	47.831	0.059097					86	27	6	0	0	0	1.0122	1	4649	4649		44.377	3.599	1	12421000			35112	6876	24117	24168	40420	40420					0.05568530363279933
KSRPWLRS	8	Unmodified	_KSRPWLRS_					0	0	0			REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3004150390625	2	515.30125	1028.58795	-0.31199	-0.00016077	-2.7644	-0.0014245	-3.0764	-0.0015853	515.2997956498652	62.472	0.56457	62.251	61.925	62.489	-0.22097					37	15	4	0	0	0	0.53044	1	7026	7026		82.75	9.8712	1	5646100	+		35113	36538	24118	24169	40421	40421					0.07479691011167233
KSRPWLRS	8	Unmodified	_KSRPWLRS_					0	0	0			REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2979125976562	2	515.30125	1028.58795	-0.78093	-0.00040242	-2.0385	-0.0010505	-2.8195	-0.0014529	515.3001078838886	62.425	0.55283	62.247	61.883	62.435	-0.17781					26	14	2	0	0	0	0.53593	1	7016	7016		82.241	9.3613	1	7810900	+		35114	36538	24118	24169	40422	40422					0.07479691011167233
KSRPWLRS	8	Unmodified	_KSRPWLRS_					0	0	0			REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	REV__nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2990112304688	2	515.30125	1028.58795	-0.39946	-0.00020584	-2.2671	-0.0011683	-2.6666	-0.0013741	515.2999527550235	62.566	0.73413	62.308	61.897	62.631	-0.25824					30	21	2	0	0	0	0.35071	1	7023	7023		104.06	21.306	1	5933000	+		35115	36538	24118	24169	40423	40423					0.07479691011167233
KSRQELIAL	9	Unmodified	_KSRQELIAL_					0	0	0		ENST00000418132.7_1_17:38296747-38323177:+|nuORF;ENSG00000108349|ENST00000264645|CASC3	ENST00000418132.7_1_17:38296747-38323177:+|nuORF	ENST00000418132.7_1_17:38296747-38323177:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3003540039062	2	529.321848	1056.62914	-0.070688	-3.7417E-05	0.89684	0.00047471	0.82615	0.0004373	529.3211640366329	38.954	0.95269	38.728	38.443	39.395	-0.2257					54	25	3	0	0	0	0.024457	1	3219	3219		29.15	0	1	1280500			35116	2890	24119	24170	40424	40424					0.10309407259978798
KSRRLLVV	8	Unmodified	_KSRRLLVV_					0	0	0		ENSG00000196083|ENST00000447382|IL1RAP	ENSG00000196083|ENST00000447382|IL1RAP	ENSG00000196083|ENST00000447382|IL1RAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.81280517578125	2	485.829643	969.644734	-0.14569	-7.0779E-05	-3.5388	-0.0017192	-3.6845	-0.00179	485.8272963347335	89.088	0.25032	88.96	88.829	89.079	-0.12775					8	5	2	0	0	0	0.027866	1	10865	10865		53.351	0	1	39651			35117	9817	24120	24171	40425	40425					0.15869738567698732
KSRRLSSF	8	Unmodified	_KSRRLSSF_					0	0	0			REV__ENSG00000005339|ENST00000262367|CREBBP	REV__ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.78167724609375	2	490.785433	979.556313	-0.64646	-0.00031727	-0.10792	-5.2965E-05	-0.75438	-0.00037024	490.78514930414354	32.86	0.26572	32.867	32.701	32.967	0.0066261					10	6	2	0	0	0	0.027866	1	2283	2283		32.812	2.3088	1	43948	+		35118	19803	24121	24172	40426	40426					0.06571698257221215
KSRRPCVL	8	Unmodified	_KSRRPCVL_					0	0	0			REV__ENST00000395811.9_1_17:17049405-17050694:+|nuORF	REV__ENST00000395811.9_1_17:17049405-17050694:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7353210449219	2	479.784379	957.554204	-0.056031	-2.6883E-05	0.29057	0.00013941	0.23454	0.00011253	479.78298742566324	60.155	0.21994	59.907	59.762	59.982	-0.24842					9	5	2	0	0	0	0.027866	1	6653	6653		23.042	10.083	1	100840	+		35119	31716	24122	24173	40427	40427					0.07372946247755863
KSRRPLGKSP	10	Unmodified	_KSRRPLGKSP_					0	0	0		ENSG00000008382|ENST00000599840|MPND;nc|ENSG00000008382|Q8N594|MPND;nc|ENSG00000008382|Q8N594-2|MPND	ENSG00000008382|ENST00000599840|MPND	ENSG00000008382|ENST00000599840|MPND	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2667236328125	2	563.346189	1124.67783	-0.32673	-0.00018406	2.5151	0.0014168	2.1883	0.0012328	563.3472884738901	73.24	0.20924	72.963	72.842	73.051	-0.2769					6	4	2	0	0	0	0.03519	1	8589	8589		4.9057	0	1	70048			35120	845	24123	24174	40428	40428					0.12047320619740276
KSRSKSSSLS	10	Unmodified	_KSRSKSSSLS_					0	0	0		ENSG00000071242|ENST00000265678|RPS6KA2	ENSG00000071242|ENST00000265678|RPS6KA2	ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7561645507812	2	533.796195	1065.57784	-0.95798	-0.00051137	3.223	0.0017204	2.2651	0.0012091	533.7982616636289	60.622	0.37287	60.369	60.171	60.544	-0.25373					12	8	2	0	0	0	0.03519	1	6735	6735		39.253	26.294	1	129430			35121	1448	24124	24175	40429	40429					0.04767038495288034
KSRVRSLSV	9	Unmodified	_KSRVRSLSV_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2794189453125	2	516.31964	1030.62473	-0.097483	-5.0332E-05	-0.34936	-0.00018038	-0.44684	-0.00023071	516.3199360686348	55.388	0.19075	55.157	55.032	55.222	-0.23087					8	5	2	0	0	0	0.015495	1	5932	5932		107.01	13.864	1	76331			35122	8792	24125	24176	40430	40430					0.1106394283708596
KSRVTQSNF	9	Unmodified	_KSRVTQSNF_					0	0	0		ENST00000603132.1_1_12:55196819-55197167:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1	ENST00000603132.1_1_12:55196819-55197167:-|nuORF	ENST00000603132.1_1_12:55196819-55197167:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.785400390625	2	533.78563	1065.55671	-0.081118	-4.3299E-05	-1.0617	-0.00056672	-1.1428	-0.00061002	533.7849534190104	23.971	1.2424	23.756	23.094	24.336	-0.2151					55	28	3	0	0	0	0.14087	2	1007	997;1007		101.46	10.683	1	2365700			35123	10511	24126	24177	40431;40432	40432					0.026550731864290356
KSRVTQSNF	9	Unmodified	_KSRVTQSNF_					0	0	0		ENST00000603132.1_1_12:55196819-55197167:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1	ENST00000603132.1_1_12:55196819-55197167:-|nuORF	ENST00000603132.1_1_12:55196819-55197167:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7855224609375	2	533.78563	1065.55671	-0.61846	-0.00033013	-0.014766	-7.8819E-06	-0.63323	-0.00033801	533.7856258391365	23.852	0.80759	23.672	23.356	24.164	-0.17989					36	18	3	0	0	0	0.14181	2	982	971;982		101.25	28.493	1	2586900			35124	10511	24126	24177	40433;40434	40434					0.026550731864290356
KSRVTQSNF	9	Unmodified	_KSRVTQSNF_					0	0	0		ENST00000603132.1_1_12:55196819-55197167:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1	ENST00000603132.1_1_12:55196819-55197167:-|nuORF	ENST00000603132.1_1_12:55196819-55197167:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7852783203125	2	533.78563	1065.55671	1.536	0.00081991	-2.032	-0.0010846	-0.49593	-0.00026472	533.7845227312747	23.874	0.56754	23.693	23.371	23.938	-0.18089					31	12	3	0	0	0	0.16539	2	964	953;964		96.034	21.56	1	2513000			35125	10511	24126	24177	40435;40436	40436					0.026550731864290356
KSRVTWNK	8	Unmodified	_KSRVTWNK_					0	0	0		PTPRS|p.P62S|1|0.26|ENSG00000105426|chr19:5274252-5274252|G/A|missense_variant	PTPRS|p.P62S|1|0.26|ENSG00000105426|chr19:5274252-5274252|G/A|missense_variant	PTPRS|p.P62S|1|0.26|ENSG00000105426|chr19:5274252-5274252|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.277099609375	2	509.793258	1017.57196	-0.63106	-0.00032171	1.2282	0.00062614	0.59715	0.00030443	509.79308030346647	33.976	0.75775	34.027	33.609	34.367	0.050255					24	18	2	0	0	0	0.027866	1	2436	2436		35.618	0	1	539140			35126	19009	24127	24178	40437	40437					0.06387984774266897
KSSDIAKTF	9	Unmodified	_KSSDIAKTF_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7716064453125	2	498.771657	995.528761	-0.3223	-0.00016075	-0.80653	-0.00040227	-1.1288	-0.00056303	498.7713275905062	31.334	2.5521	31.092	30.711	33.263	-0.24109					175	62	5	0	0	0	0.014478	7	2062	2050;2062;2074;2086;2098;2110;2124		164.46	31.44	1	72123000			35127	2372	24128	24179	40438;40439;40440;40441;40442;40443;40444	40439					0.03081750206331435
KSSDIAKTF	9	Unmodified	_KSSDIAKTF_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7712707519531	2	498.771657	995.528761	-0.37862	-0.00018884	-0.79676	-0.0003974	-1.1754	-0.00058625	498.77130452802015	31.229	2.759	31.044	30.66	33.419	-0.18503					176	67	5	0	0	0	0.012922	9	2067	2034;2043;2055;2067;2080;2092;2105;2118;2131		199.7	30.642	1	65459000			35128	2372	24128	24179	40445;40446;40447;40448;40449;40450;40451;40452;40453	40448					0.03081750206331435
KSSDIAKTF	9	Unmodified	_KSSDIAKTF_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7716979980469	2	498.771657	995.528761	-0.59799	-0.00029826	-0.57169	-0.00028514	-1.1697	-0.00058341	498.7714151138652	31.296	2.3242	31.143	30.806	33.13	-0.15231					155	57	5	0	0	0	0.012922	8	2073	2026;2037;2049;2061;2073;2086;2099;2113		182.39	41.217	1	68091000			35129	2372	24128	24179	40454;40455;40456;40457;40458;40459;40460;40461	40458					0.03081750206331435
KSSDQPLTV	9	Unmodified	_KSSDQPLTV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7610778808594	2	487.761289	973.508025	1.1923	0.00058155	-1.019	-0.00049705	0.17324	8.45E-05	487.76069590877734	37.061	0.83569	37.061	36.724	37.559	0					53	21	4	0	0	0	0.17845	1	2989	2989		93.143	15.826	1	5216000			35130	1867	24129	24180	40462	40462					0.020211598266769215
KSSDQPLTV	9	Unmodified	_KSSDQPLTV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.76123046875	2	487.761289	973.508025	0.074742	3.6456E-05	0.062119	3.0299E-05	0.13686	6.6755E-05	487.7612513394715	36.912	0.90719	36.848	36.508	37.415	-0.063385					76	23	6	0	0	0	0.20652	1	2943	2943		88.177	13.922	1	5305800			35131	1867	24129	24180	40463	40463					0.020211598266769215
KSSDQPLTV	9	Unmodified	_KSSDQPLTV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.76116943359375	2	487.761289	973.508025	-0.5789	-0.00028236	0.51966	0.00025347	-0.059243	-2.8896E-05	487.76150281793866	36.933	0.7664	36.971	36.579	37.345	0.038044					58	19	5	0	0	0	0.15388	3	2906	2906;2915;2927		98.582	28.954	1	4671500			35132	1867	24129	24180	40464;40465;40466	40464					0.020211598266769215
KSSEDATDDI	10	Unmodified	_KSSEDATDDI_					0	0	0		ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	ENSG00000101752|ENST00000261537|MIB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.3033447265625	2	540.738208	1079.46186	-0.61582	-0.00033299	-4.2865	-0.0023179	-4.9023	-0.0026509	540.7360327252441	47.208	0.35835	47.208	47.003	47.361	0					15	9	2	0	0	0	0.03519	1	4699	4699		30.318	3.6248	1	210180			35133	2347	24130	24181	40467	40467					-0.07468949866097319
KSSEVFTTF	9	Unmodified	_KSSEVFTTF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2632446289062	2	523.263665	1044.51278	-1.1254	-0.0005889	0.59176	0.00030965	-0.53367	-0.00027925	523.2639805986023	54.047	1.39	53.91	53.531	54.921	-0.13617					112	39	4	0	0	0	0.013065	7	5696	5696;5706;5717;5729;5740;5754;5768		171.53	78.336	1	37506000			35134	1773	24131	24182	40468;40469;40470;40471;40472;40473;40474	40468					-0.007699560306036801
KSSEVFTTF	9	Unmodified	_KSSEVFTTF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2631225585938	2	523.263665	1044.51278	0.033585	1.7574E-05	-0.56288	-0.00029453	-0.5293	-0.00027696	523.2633633668775	54.181	1.0768	53.936	53.657	54.733	-0.2453					113	32	6	0	0	0	0.013293	6	5752	5718;5729;5740;5752;5765;5779		176.09	84.373	1	38914000			35135	1773	24131	24182	40475;40476;40477;40478;40479;40480	40478					-0.007699560306036801
KSSEVFTTF	9	Unmodified	_KSSEVFTTF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2634887695312	2	523.263665	1044.51278	0.11005	5.7584E-05	-0.68083	-0.00035626	-0.57079	-0.00029867	523.263294927176	54.102	1.1058	53.905	53.588	54.694	-0.19739					108	31	5	0	0	0	0.013065	5	5710	5698;5710;5722;5735;5749		176.09	76.712	1	36453000			35136	1773	24131	24182	40481;40482;40483;40484;40485	40482					-0.007699560306036801
KSSGAPASW	9	Unmodified	_KSSGAPASW_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.721923828125	2	445.721967	889.429381	-0.22287	-9.9337E-05	0.32984	0.00014702	0.10697	4.7679E-05	445.7219954532714	33.151	1.0068	32.92	32.586	33.593	-0.23107					58	24	4	0	0	0	0.1158	1	2322	2322		107.01	13.812	1	3161200			35137	2895;17263	24132	24183	40486	40486					-0.01975647687777382
KSSGAPASW	9	Unmodified	_KSSGAPASW_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.72198486328125	2	445.721967	889.429381	-0.11998	-5.3476E-05	0.27759	0.00012373	0.15762	7.0255E-05	445.7219770658849	33.156	1.1459	32.956	32.649	33.795	-0.20019					65	28	4	0	0	0	0.1158	2	2327	2327;2338		107.01	22.092	1	3594300			35138	2895;17263	24132	24183	40487;40488	40487					-0.01975647687777382
KSSGAPASW	9	Unmodified	_KSSGAPASW_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40;ENST00000587125.1_1_17:58040633-58079710:-|nuORF	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.7218322753906	2	445.721967	889.429381	-0.40634	-0.00018112	0.39393	0.00017558	-0.012419	-5.5356E-06	445.72201710882285	32.974	1.0011	32.808	32.516	33.517	-0.16565					52	24	3	0	0	0	0.03849	2	2295	2284;2295		134.81	14.19	1	3534400			35139	2895;17263	24132	24183	40489;40490	40490					-0.01975647687777382
KSSKRKILS	9	Unmodified	_KSSKRKILS_					0	0	0		ENST00000529230.5_1_11:46797812-46797845:-|nuORF	ENST00000529230.5_1_11:46797812-46797845:-|nuORF	ENST00000529230.5_1_11:46797812-46797845:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.273193359375	2	523.837665	1045.66078	-1.0544	-0.00055236	4.1892	0.0021944	3.1347	0.0016421	523.8397683836403	62.565	1.5799	62.565	62.446	64.026	0					64	41	2	0	0	0	0.024495	1	7290	7290		14.137	0	1	270940			35140	16206	24133	24184	40491	40491					0.13977400013959596
KSSKSSGK	8	Unmodified	_KSSKSSGK_					0	0	0		ENST00000519354.1_1_17:15341092-15355857:-|nuORF;ENSG00000239704|ENST00000619038|CDRT4	ENST00000519354.1_1_17:15341092-15355857:-|nuORF	ENST00000519354.1_1_17:15341092-15355857:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.7306213378906	2	404.729792	807.445031	0.1706	6.9045E-05	-1.2737	-0.00051551	-1.1031	-0.00044646	404.7299579093841	104.14	1.1685	103.98	103.17	104.33	-0.16791					41	30	2	0	0	0	1.0574	1	12949	12949		3.41	0.25078	1	308030			35141	10762	24134	24185	40492	40492					0.03360638829292384
KSSLSFLVPSL	11	Unmodified	_KSSLSFLVPSL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3422241210938	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0344	1	11697	11697		29.17	4.6509	1	12648000			35142	3304	24135	24186	40493	40493					0.09415427371436635
KSSPLEQW	8	Unmodified	_KSSPLEQW_					0	0	0			REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.75128173828125	2	487.750724	973.486896	-0.60923	-0.00029715	0.9287	0.00045297	0.31947	0.00015582	487.7511244363818	75.847	1.2307	75.574	75.018	76.248	-0.27266					69	30	3	0	0	0	0.20995	1	8987	8987		138.83	5.0129	1	2506500	+		35143	32451	24136	24187	40494	40494					-0.0009080548219344564
KSSPLEQW	8	Unmodified	_KSSPLEQW_					0	0	0			REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7508239746094	2	487.750724	973.486896	-0.13982	-6.8199E-05	0.49638	0.00024211	0.35656	0.00017391	487.7509504093895	75.836	1.2307	75.577	74.991	76.221	-0.25866					73	30	4	0	0	0	0.27973	1	8997	8997		120.62	7.2094	1	2560900	+		35144	32451	24136	24187	40495	40495					-0.0009080548219344564
KSSPLEQW	8	Unmodified	_KSSPLEQW_					0	0	0			REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	REV__ENST00000435945.1_1_Y:28761086-28769767:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7524108886719	2	487.750724	973.486896	0.38747	0.00018899	-0.18092	-8.8245E-05	0.20655	0.00010074	487.7506615220257	75.701	1.0611	75.526	74.986	76.047	-0.17548					59	26	4	0	0	0	0.27973	1	8951	8951		120.62	7.2094	1	2737800	+		35145	32451	24136	24187	40496	40496					-0.0009080548219344564
KSSQKNQAL	9	Unmodified	_KSSQKNQAL_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.3091125488281	2	502.28018	1002.54581	-0.36284	-0.00018225	0.39254	0.00019716	0.029702	1.4919E-05	502.2803591590319	32.119	0.35435	32.119	31.869	32.224	0					22	8	4	0	0	0	0.024477	1	2209	2209		27.882	0	1	1015300	+		35146	24139	24137	24188	40497	40497					0.04463670812140208
KSSQVQRRF	9	Unmodified	_KSSQVQRRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.320068359375	2	568.320171	1134.62579	0.027464	1.5608E-05	-0.66365	-0.00037717	-0.63619	-0.00036156	568.3199357707957	20.193	0.67675	20.025	19.767	20.444	-0.16774					50	13	5	0	0	0	0.56934	1	520	520		54.776	10.399	1	2087800			35147	1655	24138	24189	40498	40498					0.06386157205974996
KSSQVQRRF	9	Unmodified	_KSSQVQRRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.3199462890625	2	568.320171	1134.62579	1.0841	0.00061614	-1.7262	-0.00098102	-0.64203	-0.00036488	568.31933654529	20.261	0.92476	20.065	19.805	20.73	-0.19577					55	18	5	0	0	0	0.72494	1	532	532		44.377	11.565	1	1731900			35148	1655	24138	24189	40499	40499					0.06386157205974996
KSSQVQRRF	9	Unmodified	_KSSQVQRRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.3200073242188	2	568.320171	1134.62579	0.13037	7.409E-05	-0.70614	-0.00040131	-0.57577	-0.00032722	568.3199570056347	20.365	0.93317	20.142	19.779	20.712	-0.22344					56	18	5	0	0	0	0.80003	2	502	502;513		39.253	5.0803	1	1781200			35149	1655	24138	24189	40500;40501	40500					0.06386157205974996
KSSQVQRRF	9	Unmodified	_KSSQVQRRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	568.320171	1134.62579	-0.59408	-0.00033763	-5.9128	-0.0033604	-6.5069	-0.003698	568.8175415740834	19.821	0.24067	19.821	19.689	19.929	0	-0.19213	-0.0052992	NaN	54.776	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12202			35150	1655	24138	24189							0.06386157205974996
KSSRKRLTK	9	Unmodified	_KSSRKRLTK_					0	0	0			REV__ENSG00000135914|ENST00000258400|HTR2B	REV__ENSG00000135914|ENST00000258400|HTR2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3259887695312	2	552.354014	1102.69348	-0.10239	-5.6556E-05	1.2429	0.00068649	1.1405	0.00062994	552.3549191319839	54.208	0.29735	53.963	53.775	54.073	-0.2453					15	9	2	0	0	0	0.024527	1	5739	5739		12.812	0	1	449310	+		35151	23595	24139	24190	40502	40502					0.14623607136786632
KSSSKRQQQE	10	Unmodified	_KSSSKRQQQE_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5441589355469	3	402.545947	1204.61601	0.80503	0.00032406	-4.2091	-0.0016944	-3.4041	-0.0013703	402.544170379503	25.062	0.97452	24.888	24.643	25.617	-0.17472					44	22	3	0	0	0	1.0975	1	1146	1146		33.039	0	1	722020	+		35152	27860	24140	24191	40503	40503					0.021889244099384086
KSSSSNLKI	9	Unmodified	_KSSSSNLKI_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.27691650390625	2	482.277106	962.53966	0.073643	3.5516E-05	-0.52199	-0.00025174	-0.44834	-0.00021623	482.2768318904873	24.587	0.88838	24.666	24.364	25.253	0.078344					44	19	4	0	0	0	0.086035	1	1031	1031		115.49	24.717	1	1460200			35153	3121	24141	24192	40504	40504					0.056891525806122445
KSSTEKIS	8	Unmodified	_KSSTEKIS_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.25250244140625	2	440.242732	878.470912	-1.2084	-0.000532	-3.9385	-0.0017339	-5.147	-0.0022659	440.2409418381278	90.196	0.90914	90.041	89.566	90.475	-0.1552					35	21	2	0	0	0	0.027866	1	11019	11019		9.7057	0	1	430870	+		35154	22195	24142	24193	40505	40505					0.026814882809162555
KSSTGMAQETL	11	Unmodified	_KSSTGMAQETL_					0	0	0			REV__ENST00000509849.5_1_5:37125538-37138928:-|nuORF	REV__ENST00000509849.5_1_5:37125538-37138928:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7813110351562	2	576.781896	1151.54924	-1.2871	-0.00074239	1.918	0.0011062	0.63084	0.00036386	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	0.99689	1	7614	7614		37.508	1.8899	1	1856800	+		35155	34092	24143	24194	40506	40506					-0.020474471961733798
KSSTPNHKKW	10	Unmodified	_KSSTPNHKKW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.8878173828125	3	404.887645	1211.64111	1.6201	0.00065597	-1.5301	-0.00061953	0.090009	3.6444E-05	404.8870374578497	17.78	1.1393	17.626	17.358	18.497	-0.15403					56	22	4	0	0	0	0.54106	3	220	212;220;232		83.647	24.977	1	2204000			35156	18271	24144	24195	40507;40508;40509	40508					0.04375024003161343
KSSTPNHKKW	10	Unmodified	_KSSTPNHKKW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.8279418945312	2	606.827829	1211.64111	0.36513	0.00022157	-0.43741	-0.00026543	-0.072282	-4.3863E-05	606.8274528217406	17.755	0.59637	17.601	17.408	18.004	-0.15403					28	11	4	0	0	0	0.3202	2	226	216;226		85.161	13.123	1	472580			35157	18271	24144	24195	40510;40511	40511					0.04375024003161343
KSSTPNHKKW	10	Unmodified	_KSSTPNHKKW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.8877258300781	3	404.887645	1211.64111	0.59779	0.00024204	-0.5853	-0.00023698	0.012492	5.0578E-06	404.88742601233906	17.795	0.99399	17.589	17.315	18.309	-0.20669					49	19	4	0	0	0	0.32213	2	207	207;219		106.68	44.992	1	1840100			35158	18271	24144	24195	40512;40513	40512					0.04375024003161343
KSSTPNHKKW	10	Unmodified	_KSSTPNHKKW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	606.827880859375	2	606.827829	1211.64111	-0.51565	-0.00031291	0.56981	0.00034578	0.054161	3.2867E-05	606.828046531	17.795	0.54756	17.589	17.364	17.912	-0.20669					27	10	4	0	0	0	0.16319	2	214	214;226		104.01	32.136	1	351670			35159	18271	24144	24195	40514;40515	40514					0.04375024003161343
KSSTPNHKKW	10	Unmodified	_KSSTPNHKKW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	404.887645	1211.64111	3.8698	0.0015668	-3.7886	-0.001534	0.0812	3.2877E-05	404.8860155400406	17.872	0.19845	17.621	17.47	17.669	-0.25049	0.0090757	-0.0033316	NaN	106.68	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12864			35160	18271	24144	24195							0.04375024003161343
KSSVEVYAW	9	Unmodified	_KSSVEVYAW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	ENSG00000071054|ENST00000324219|MAP4K4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7714233398438	2	534.771657	1067.52876	-0.80918	-0.00043273	0.80781	0.000432	-0.0013677	-7.3143E-07	534.7719279025562	55.053	0.61322	54.907	54.608	55.221	-0.14609					46	16	4	0	0	0	0.32811	1	5880	5880		71.877	7.6702	1	3060300			35161	1444;5499	24145	24196	40516	40516					-0.0023024979368528875
KSSVEVYAW	9	Unmodified	_KSSVEVYAW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	ENSG00000071054|ENST00000324219|MAP4K4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.7717895507812	2	534.771657	1067.52876	-0.53369	-0.0002854	0.35516	0.00018993	-0.17853	-9.5471E-05	534.7716716514877	55.142	0.58492	54.911	54.638	55.222	-0.23087					42	16	4	0	0	0	0.32811	2	5898	5887;5898		71.877	5.4482	1	3622400			35162	1444;5499	24145	24196	40517;40518	40518					-0.0023024979368528875
KSSVEVYAW	9	Unmodified	_KSSVEVYAW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	ENSG00000071054|ENST00000324219|MAP4K4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.7711791992188	2	534.771657	1067.52876	-0.19001	-0.00010161	0.12561	6.7171E-05	-0.064404	-3.4442E-05	534.7715322128588	55.115	0.63984	54.909	54.538	55.177	-0.20613					51	17	4	0	0	0	0.45795	1	5869	5869		62.107	5.6736	1	3470800			35163	1444;5499	24145	24196	40519	40519					-0.0023024979368528875
KSSVRLLI	8	Unmodified	_KSSVRLLI_					0	0	0		ENSG00000130561|ENST00000409110|SAG	ENSG00000130561|ENST00000409110|SAG	ENSG00000130561|ENST00000409110|SAG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2748107910156	2	458.302927	914.591301	0.051253	2.3489E-05	-0.035778	-1.6397E-05	0.015474	7.0919E-06	458.30281609319337	34.195	0.34463	33.971	33.762	34.106	-0.22412					14	8	2	0	0	0	0.027866	1	2515	2515		11.511	0	1	117040			35164	4431	24146	24197	40520	40520					0.1305894106518508
KSSYFIPVS	9	Unmodified	_KSSYFIPVS_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.801513671875	2	514.276575	1026.5386	0.89	0.0004577	0.018384	9.4544E-06	0.90838	0.00046716	514.2759553440577	59.544	0.69322	59.544	59.295	59.988	0					37	18	4	0	0	0	0.024257	1	6861	6861		49.536	0	1	677210	+		35165	20085	24147	24198	40521	40521					0.026389382117031346
KSTAPSLALL	10	Unmodified	_KSTAPSLALL_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2828674316406	2	500.8055	999.596446	-0.28494	-0.0001427	0.32933	0.00016493	0.044388	2.223E-05	500.80587554846403	37.615	0.67373	37.615	37.195	37.869	0					34	18	3	0	0	0	0.03519	1	3110	3110		42.864	0	1	598110			35166	3553	24148	24199	40522	40522					0.09663200137117656
KSTCASFSPR	10	Unmodified	_KSTCASFSPR_					0	0	0		ENST00000423414.5_1_7:130668826-130792751:-|nuORF;ENST00000451786.5_1_7:130737305-130792820:-|nuORF;ENST00000429901.1_1_7:130737210-130792820:-|nuORF	ENST00000423414.5_1_7:130668826-130792751:-|nuORF	ENST00000423414.5_1_7:130668826-130792751:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.2789306640625	2	542.266216	1082.51788	-0.40864	-0.00022159	1.6455	0.00089232	1.2369	0.00067073	542.2668399612223	53.779	0.52382	53.533	53.163	53.687	-0.2453					24	14	2	0	0	0	0.03519	1	5633	5633		12.812	4.118	1	617150			35167	14023	24149	24200	40523	40523					-0.02007975439596521
KSTDAVALW	9	Unmodified	_KSTDAVALW_					0	0	0			REV__ENSG00000204033|ENST00000372113|LRIT2	REV__ENSG00000204033|ENST00000372113|LRIT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.76611328125	2	495.766374	989.518196	-0.87922	-0.00043589	0.46996	0.00023299	-0.40926	-0.0002029	495.76646641610154	56.043	0.91018	55.887	55.424	56.334	-0.15656					49	23	3	0	0	0	0.45795	1	6068	6068		62.107	1.9892	1	1519500	+		35168	28563	24150	24201	40524	40524					0.023017675518872238
KSTDGPLRLL	10	Unmodified	_KSTDGPLRLL_					0	0	0			REV__ENST00000330333.10_1_21:42609613-42613867:+|nuORF	REV__ENST00000330333.10_1_21:42609613-42613867:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.326171875	2	550.327131	1098.63971	-0.021848	-1.2023E-05	0.9288	0.00051114	0.90695	0.00049912	550.3277998075141	98.945	1.0124	98.945	98.479	99.492	0					46	22	3	0	0	0	1.0719	1	12684	12684		36.447	1.2947	1	260500	+		35169	30458	24151	24202	40525	40525					0.09433389914420331
KSTDVAKTF	9	Unmodified	_KSTDVAKTF_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7714538574219	2	498.771657	995.528761	-1.3536	-0.00067513	0.67687	0.0003376	-0.67672	-0.00033753	498.77196437475214	28.592	1.1047	28.347	28.081	29.185	-0.24524					97	25	6	0	0	0	0.014067	5	1670	1670;1678;1690;1702;1714		190.62	46.123	1	9501400			35170	4991	24152	24203	40526;40527;40528;40529;40530	40526					0.03081750206331435
KSTDVAKTF	9	Unmodified	_KSTDVAKTF_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7717590332031	2	498.771657	995.528761	-0.61654	-0.00030751	-0.12076	-6.0233E-05	-0.7373	-0.00036775	498.7715964720316	28.484	1.1934	28.315	27.966	29.16	-0.16897					92	27	5	0	0	0	0.014478	5	1647	1647;1659;1671;1683;1698		164.46	40.375	1	8472500			35171	4991	24152	24203	40531;40532;40533;40534;40535	40531					0.03081750206331435
KSTDVAKTF	9	Unmodified	_KSTDVAKTF_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7720031738281	2	498.771657	995.528761	-0.37862	-0.00018884	-0.79676	-0.0003974	-1.1754	-0.00058625	498.77130452802015	31.229	2.759	31.044	30.66	33.419	-0.18503					176	67	5	0	0	0	0.1158	1	2155	2155		107.01	0.32444	1	65459000			35172	4991	24152	24203	40536	40536					0.03081750206331435
KSTDVAKTF	9	Unmodified	_KSTDVAKTF_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7716064453125	2	498.771657	995.528761	-0.79401	-0.00039603	0.13316	6.6414E-05	-0.66085	-0.00032961	498.77169667419855	28.533	1.2946	28.381	28.121	29.415	-0.15195					75	30	4	0	0	0	0.012922	4	1665	1642;1653;1665;1677		185.72	41.832	1	11980000			35173	4991	24152	24203	40537;40538;40539;40540	40539					0.03081750206331435
KSTESDALV	9	Unmodified	_KSTESDALV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.2643127441406	2	475.245472	948.476391	-0.80251	-0.00038139	-2.016	-0.0009581	-2.8185	-0.0013395	475.2444531609263	52.439	0.53562	52.17	52.018	52.553	-0.26903					21	13	2	0	0	0	0.024427	1	5419	5419		34.173	1.3601	1	155650	+		35174	27387	24153	24204	40541	40541					9.167072721538716E-05
KSTETKKTGE	10	Unmodified	_KSTETKKTGE_					0	0	0			REV__ENSG00000075340|ENST00000264436|ADD2	REV__ENSG00000075340|ENST00000264436|ADD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7770385742188	2	554.79586	1107.57717	-0.20507	-0.00011377	2.4247	0.0013452	2.2196	0.0012314	555.3000135737697	76.35	0.67139	76.182	75.853	76.525	-0.16854					33	15	3	0	0	0	0.03519	1	9088	9088		21.686	0	1	220540	+		35175	20545	24154	24205	40542	40542					0.027681990555720404
KSTGTGFPML	10	Unmodified	_KSTGTGFPML_					0	0	0			REV__ENSG00000172817|ENST00000310193|CYP7B1	REV__ENSG00000172817|ENST00000310193|CYP7B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7504272460938	2	519.76806	1037.52157	-0.3654	-0.00018993	2.4854	0.0012918	2.12	0.0011019	519.768653554654	24.025	0.53706	24.103	23.692	24.229	0.077799					13	11	2	0	0	0	0.03519	1	926	926		19.104	0	1	21407	+		35176	26712	24155	24206	40543	40543					0.004306943342726299
KSTKLTGTE	9	Unmodified	_KSTKLTGTE_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A;REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.27728271484375	2	482.769114	963.523675	-1.1078	-0.0005348	4.2733	0.002063	3.1656	0.0015282	482.7705920604657	24.915	0.26572	24.881	24.771	25.037	-0.034395					8	5	2	0	0	0	0.024447	1	1101	1101		40.778	3.6191	1	36792	+		35177	24774;30646	24156	24207	40544	40544					0.04045446343707226
KSTLITVY	8	Unmodified	_KSTLITVY_					0	0	0			REV__ENSG00000187747|ENST00000345043|OR52B6	REV__ENSG00000187747|ENST00000345043|OR52B6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.773193359375	2	462.773668	923.532783	0.082883	3.8356E-05	-0.96264	-0.00044549	-0.87976	-0.00040713	462.77286488183927	18.292	0.29755	18.089	17.915	18.212	-0.20371					11	5	3	0	0	0	1.0516	1	282	282		29.15	4.9468	1	118550	+		35178	27968	24157	24208	40545	40545					0.06795839700043871
KSTLKILVL	9	Unmodified	_KSTLKILVL_					0	0	0		ENST00000401827.7_1_8:66631012-66631114:-|nuORF	ENST00000401827.7_1_8:66631012-66631114:-|nuORF	ENST00000401827.7_1_8:66631012-66631114:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3023376464844	2	507.84971	1013.68487	-0.21153	-0.00010743	0.019448	9.8767E-06	-0.19209	-9.7551E-05	507.84965924491337	55.9	0.69582	55.744	55.442	56.138	-0.15601					33	18	3	0	0	0	0.024319	1	6182	6182		31.53	0	1	411180			35179	13675	24158	24209	40546	40546					0.17857240447608547
KSTLPSGNHS	10	Unmodified	_KSTLPSGNHS_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.81787109375	2	514.261988	1026.50942	0.25026	0.0001287	2.3227	0.0011945	2.573	0.0013232	514.2630985721529	68.649	0.36198	68.418	68.275	68.637	-0.23048					13	8	2	0	0	0	0.03519	1	7916	7916		17.468	0	1	151830	+		35180	27755	24159	24210	40547	40547					-0.0027720608457002527
KSTRWVKV	8	Unmodified	_KSTRWVKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3233947753906	2	502.306001	1002.59745	-0.51359	-0.00025798	-0.71047	-0.00035687	-1.2241	-0.00061485	502.30567908984074	73.433	0.59288	73.168	72.852	73.445	-0.26479					21	14	2	0	0	0	0.027866	1	8673	8673		17.365	0	1	358280			35181	6479	24160	24211	40548	40548					0.09625459296705685
KSTTSLLV	8	Unmodified	_KSTTSLLV_					0	0	0			REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.23858642578125	2	424.758018	847.501483	0.042674	1.8126E-05	1.6983	0.00072138	1.741	0.0007395	424.7585989356586	29.239	0.7997	29.09	28.826	29.626	-0.14952					23	18	2	0	0	0	0.027866	1	1812	1812		12.959	0	1	166550	+		35182	22493	24161	24212	40549	40549					0.07163266665952506
KSTWIKIPS	9	Unmodified	_KSTWIKIPS_					0	0	0			REV__ENSG00000066926|ENST00000262093|FECH	REV__ENSG00000066926|ENST00000262093|FECH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.2948608398438	2	530.313492	1058.61243	-0.12551	-6.6557E-05	-0.19388	-0.00010282	-0.31938	-0.00016937	530.3133279221586	65.504	0.79234	65.541	65.221	66.013	0.037384					30	21	2	0	0	0	0.024418	1	7730	7730		45.972	15.469	1	1576900	+		35183	20349	24162	24213	40550	40550					0.08546906374044738
KSVAGVINQP	10	Unmodified	_KSVAGVINQP_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.792724609375	2	506.792924	1011.57129	0.3151	0.00015969	-0.30599	-0.00015507	0.0091149	4.6194E-06	506.7925815730229	75.761	0.62266	75.773	75.505	76.128	0.011635					45	16	4	0	0	0	0.65479	1	9249	9249		70.816	9.1249	1	2907800			35184	6441	24163	24214	40551	40551					0.06597145334558263
KSVENLGVSY	10	Unmodified	_KSVENLGVSY_					0	0	0		nc|ENSG00000146143|P49643-2|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.2869262695312	2	548.287671	1094.56079	-0.42813	-0.00023474	-0.19035	-0.00010437	-0.61848	-0.0003391	548.2874178814001	47.666	0.76226	47.569	47.277	48.039	-0.097553					57	20	4	0	0	0	0.55987	1	4681	4681		81.525	32.083	1	2575500			35185	5859	24164	24215	40552	40552					0.01729117889499321
KSVENLGVSY	10	Unmodified	_KSVENLGVSY_					0	0	0		nc|ENSG00000146143|P49643-2|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.28759765625	2	548.287671	1094.56079	-0.58525	-0.00032089	-0.27598	-0.00015132	-0.86123	-0.0004722	548.2873668505047	47.969	0.8689	47.693	47.457	48.326	-0.27598					52	23	4	0	0	0	0.60734	2	4716	4716;4735		76.17	23.233	1	2430900			35186	5859	24164	24215	40553;40554	40553					0.01729117889499321
KSVENLGVSY	10	Unmodified	_KSVENLGVSY_					0	0	0		nc|ENSG00000146143|P49643-2|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.2877197265625	2	548.287671	1094.56079	-0.038471	-2.1093E-05	-0.81662	-0.00044774	-0.85509	-0.00046884	548.2870930058773	47.786	0.69704	47.599	47.355	48.052	-0.18684					50	18	4	0	0	0	0.6365	1	4691	4691		72.879	16.158	1	2698700			35187	5859	24164	24215	40555	40555					0.01729117889499321
KSVENLGVSY	10	Unmodified	_KSVENLGVSY_					0	0	0		nc|ENSG00000146143|P49643-2|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.287671	1094.56079	-1.2803	-0.00070197	-4.2725	-0.0023426	-5.5528	-0.0030445	548.2853624220622	47.763	0.29144	47.822	47.708	47.999	0.059097	0.15108	-0.0040055	NaN	81.525	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309130			35188	5859	24164	24215							0.01729117889499321
KSVERIVKL	9	Unmodified	_KSVERIVKL_					0	0	0			REV__nc|ENSG00000157510|Q8TED9-2|AFAP1L1	REV__nc|ENSG00000157510|Q8TED9-2|AFAP1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.258544921875	2	536.347866	1070.68118	-0.72015	-0.00038625	3.55	0.001904	2.8298	0.0015178	536.3494186195883	52.931	0.76538	53.027	52.641	53.407	0.095669					36	20	3	0	0	0	0.024367	1	5687	5687		44.377	4.319	1	471870	+		35189	25135	24165	24216	40556	40556					0.1486657067375745
KSVFEVKGL	9	Unmodified	_KSVFEVKGL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.75091552734375	2	503.800217	1005.58588	-0.42868	-0.00021597	3.2148	0.0016196	2.7861	0.0014037	503.8016796481961	33.699	0.42497	33.695	33.523	33.948	-0.0045624					16	10	2	0	0	0	0.024427	1	2457	2457		14.137	0	1	126780			35190	9730	24166	24217	40557	40557					0.08331217482702868
KSVIKLQAW	9	Unmodified	_KSVIKLQAW_					0	0	0		nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG;ENST00000478903.5_1_3:197616453-197639632:-|nuORF	nc|ENSG00000114473|Q9H095-2|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.8297729492188	2	536.829309	1071.64407	-0.20885	-0.00011212	-0.55869	-0.00029992	-0.76754	-0.00041204	536.8286451280893	49.578	0.90692	49.472	49.142	50.049	-0.10558					42	22	3	0	0	0	0.014918	2	4994	4981;4994		162.25	52.133	1	2341500			35191	3366	24167	24218	40558;40559	40559					0.11110899127993434
KSVIKLQAW	9	Unmodified	_KSVIKLQAW_					0	0	0		nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG;ENST00000478903.5_1_3:197616453-197639632:-|nuORF	nc|ENSG00000114473|Q9H095-2|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.8294677734375	2	536.829309	1071.64407	-0.34876	-0.00018722	0.056034	3.0081E-05	-0.29272	-0.00015714	536.8291923398356	49.846	0.63781	49.566	49.201	49.839	-0.27977					32	12	3	0	0	0	0.015064	1	5017	5017		190.52	69.649	1	2637200			35192	3366	24167	24218	40560	40560					0.11110899127993434
KSVIKLQAW	9	Unmodified	_KSVIKLQAW_					0	0	0		nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG;ENST00000478903.5_1_3:197616453-197639632:-|nuORF	nc|ENSG00000114473|Q9H095-2|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.8289794921875	2	536.829309	1071.64407	-0.32663	-0.00017535	0.026312	1.4125E-05	-0.30032	-0.00016122	536.8291604967908	49.672	0.561	49.492	49.191	49.752	-0.18071					34	12	3	0	0	0	0.020687	2	4991	4991;5005		148.99	53.172	1	2542600			35193	3366	24167	24218	40561;40562	40561					0.11110899127993434
KSVKKMLAL	9	Unmodified	_KSVKKMLAL_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.3258972167969	2	509.328088	1016.64162	-0.31861	-0.00016228	-3.3698	-0.0017163	-3.6884	-0.0018786	509.3262910924943	77.685	0.72538	77.523	77.225	77.951	-0.16196					54	16	4	0	0	0	0.4752	1	9267	9267		60.972	0.67798	1	4794900	+		35194	28263;19723	24168	24219	40563	40563					0.13396727398651365
KSVLSTSRNL	10	Unmodified	_KSVLSTSRNL_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7665405273438	2	552.822212	1103.62987	-0.1775	-9.8123E-05	3.528	0.0019503	3.3505	0.0018522	552.8240683772019	61.359	0.53795	61.153	60.928	61.466	-0.20599					22	12	2	0	0	0	0.03519	1	6872	6872		32.751	0	1	697170			35195	3568	24169	24220	40564	40564					0.08220201909034586
KSVLTRVLP	9	Unmodified	_KSVLTRVLP_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.2908935546875	2	506.829309	1011.64407	-0.30039	-0.00015225	0.43845	0.00022222	0.13806	6.9972E-05	506.8291062269625	27.339	0.55483	27.096	26.911	27.466	-0.24217					24	12	3	0	0	0	0.024495	1	1544	1544		26.693	12.029	1	224870	+		35196	24334	24170	24221	40565	40565					0.1387089912798274
KSVLTRVLP	9	Unmodified	_KSVLTRVLP_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.829309	1011.64407	-0.40703	-0.0002063	0.20589	0.00010435	-0.20114	-0.00010194	506.8291473747103	27.363	0.4599	27.206	26.974	27.434	-0.15664	0.10209	-0.00010773	NaN	14.137	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244700	+		35197	24334	24170	24221							0.1387089912798274
KSVLVFGF	8	Unmodified	_KSVLVFGF_					0	0	0			REV__ENST00000396987.7_1_8:41479301-41479412:+|nuORF	REV__ENST00000396987.7_1_8:41479301-41479412:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.28497314453125	2	448.765646	895.516739	-0.3152	-0.00014145	1.5509	0.00069597	1.2357	0.00055452	448.7673495465104	34.805	0.23776	34.805	34.706	34.944	0					8	5	2	0	0	0	0.027866	1	2641	2641		33.516	6.7195	1	33979	+		35198	31759	24171	24222	40566	40566					0.06480178253809754
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.32861328125	2	508.329142	1014.64373	-0.64917	-0.00032999	-0.27166	-0.00013809	-0.92082	-0.00046808	508.32890260449796	33.665	0.70768	33.665	33.421	34.129	0					53	18	4	0	0	0	0.015512	1	2451	2451		159.28	29.855	1	2050100			35199	8947	24172	24223	40567	40567					0.1369947940813745
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3286437988281	2	508.329142	1014.64373	-0.58533	-0.00029754	-0.34217	-0.00017394	-0.9275	-0.00047147	508.32884007008454	33.546	0.70378	33.552	33.255	33.959	0.0066261					52	18	4	0	0	0	0.038547	2	2411	2411;2421		134.77	16.955	1	2339400			35200	8947	24172	24223	40568;40569	40568					0.1369947940813745
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.3283996582031	2	508.329142	1014.64373	0.12301	6.2528E-05	-0.98436	-0.00050038	-0.86135	-0.00043785	508.32856526170076	33.504	0.89985	33.561	33.279	34.179	0.056568					59	22	4	0	0	0	0.22902	1	2371	2371		85.161	15.533	1	2022600			35201	8947	24172	24223	40570	40570					0.1369947940813745
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.329142	1014.64373	-0.1296	-6.588E-05	-0.10622	-5.3993E-05	-0.23582	-0.00011987	508.32894510338946	33.612	0.52008	33.381	33.153	33.673	-0.23107	-0.11568	0.00033424	NaN	159.28	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372540			35202	8947	24172	24223							0.1369947940813745
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.329142	1014.64373	-0.53799	-0.00027348	0.036759	1.8686E-05	-0.50123	-0.00025479	508.32896074136886	33.617	0.46593	33.416	33.209	33.675	-0.20019	-0.080538	0.0004796	NaN	159.28	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429980			35203	8947	24172	24223							0.1369947940813745
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF;nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	ENST00000531995.1_1_8:144902796-144903907:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.329142	1014.64373	-1.2482	-0.00063449	0.67575	0.0003435	-0.57243	-0.00029098	508.3293411824428	33.572	0.3979	33.406	33.195	33.593	-0.16565	-0.091119	0.0011292	NaN	159.28	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431640			35204	8947	24172	24223							0.1369947940813745
KSVLYLCFL	9	Unmodified	_KSVLYLCFL_					0	0	0			REV__nc|ENSG00000205560|Q92523-4|CPT1B	REV__nc|ENSG00000205560|Q92523-4|CPT1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7928466796875	2	543.306821	1084.59909	-1.0848	-0.00058939	3.3072	0.0017968	2.2224	0.0012074	543.8104942319773	44.161	0.55376	44.198	43.923	44.476	0.036903					39	15	4	0	0	0	0.024405	1	4154	4154		35.618	12.576	1	240590	+		35205	28680	24173	24224	40571	40571					0.06017332270425868
KSVNSGAGVF	10	Unmodified	_KSVNSGAGVF_					0	0	0		ENST00000601500.1_1_5:50673904-50674114:-|nuORF	ENST00000601500.1_1_5:50673904-50674114:-|nuORF	ENST00000601500.1_1_5:50673904-50674114:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2647399902344	2	483.256174	964.497795	-1.2822	-0.00061961	-0.91369	-0.00044155	-2.1958	-0.0010612	483.25540594096793	37.951	0.42975	37.951	37.769	38.199	0					20	12	2	0	0	0	0.03519	1	3126	3126		25.574	9.9378	1	309220			35206	17513	24174	24225	40572	40572					0.01412596892100737
KSVPPELKET	10	Unmodified	_KSVPPELKET_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232;ENST00000512003.7_1_5:109760554-109954135:-|nuORF;ENST00000508571.6_1_5:109668587-109961153:-|nuORF;ENST00000515518.6_1_5:109760554-109978041:-|nuORF;nc|ENSG00000186952|C9JQI7-2|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.3160400390625	2	564.318971	1126.62339	0.83588	0.0004717	2.813	0.0015874	3.6489	0.0020591	564.3203945526699	37.177	0.60886	37.177	36.805	37.414	0					21	15	2	0	0	0	0.03519	1	2959	2959		35.152	12.11	1	137500			35207	9596	24175	24226	40573	40573					0.06514263957637922
KSVRLVVN	8	Unmodified	_KSVRLVVN_					0	0	0		nc|ENSG00000106078|O75128-5|COBL;nc|ENSG00000106078|O75128-4|COBL;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-5|COBL	nc|ENSG00000106078|O75128-5|COBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.763916015625	2	457.792727	913.5709	1.9243	0.00088094	-1.7803	-0.00081499	0.14407	6.5955E-05	457.7918069380898	23.752	0.43351	23.561	23.36	23.794	-0.19117					16	9	2	0	0	0	0.027866	1	921	921		16.473	0	1	120140			35208	2758	24176	24227	40574	40574					0.11065770405366493
KSVRQKKP	8	Unmodified	_KSVRQKKP_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.74273681640625	2	485.811451	969.608348	-0.42027	-0.00020417	0.50753	0.00024657	0.087258	4.2391E-05	485.8115393994058	42.319	0.80231	42.087	41.803	42.605	-0.23186					55	21	4	0	0	0	0.027866	1	3767	3767		15.642	0	1	2536700	+		35209	21788	24177	24228	40575	40575					0.12232861670986495
KSVRRLRE	8	Unmodified	_KSVRRLRE_					0	0	0		ENST00000590378.5_1_19:10197589-10200348:+|nuORF;nc|ENSG00000130813|Q9NUL5-3|SHFL;ENST00000592551.5_1_19:10196860-10198099:+|nuORF;ENST00000585919.5_1_19:10197010-10202030:+|nuORF;ENST00000397881.7_2_19:10197589-10201972:+|nuORF;nc|ENSG00000130813|Q9NUL5-4|SHFL;ENSG00000130813|ENST00000253110|SHFL	ENST00000590378.5_1_19:10197589-10200348:+|nuORF	ENST00000590378.5_1_19:10197589-10200348:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7573852539062	2	522.325257	1042.63596	-0.074258	-3.8787E-05	2.5829	0.0013491	2.5087	0.0013103	522.3264027409351	26.194	0.52668	26.025	25.774	26.301	-0.16816					29	15	3	0	0	0	0.027866	1	1279	1279		15.642	3.435	1	347020			35210	4464	24178	24229	40576	40576					0.11634764931227437
KSVRRLRE	8	Unmodified	_KSVRRLRE_					0	0	0		ENST00000590378.5_1_19:10197589-10200348:+|nuORF;nc|ENSG00000130813|Q9NUL5-3|SHFL;ENST00000592551.5_1_19:10196860-10198099:+|nuORF;ENST00000585919.5_1_19:10197010-10202030:+|nuORF;ENST00000397881.7_2_19:10197589-10201972:+|nuORF;nc|ENSG00000130813|Q9NUL5-4|SHFL;ENSG00000130813|ENST00000253110|SHFL	ENST00000590378.5_1_19:10197589-10200348:+|nuORF	ENST00000590378.5_1_19:10197589-10200348:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.325257	1042.63596	-0.95278	-0.00049766	3.1325	0.0016362	2.1797	0.0011385	522.3267476870034	26.419	0.54095	26.183	26.037	26.578	-0.23603	0.023716	0.00023943	NaN	15.642	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387890			35211	4464	24178	24229							0.11634764931227437
KSVRRLRE	8	Unmodified	_KSVRRLRE_					0	0	0		ENST00000590378.5_1_19:10197589-10200348:+|nuORF;nc|ENSG00000130813|Q9NUL5-3|SHFL;ENST00000592551.5_1_19:10196860-10198099:+|nuORF;ENST00000585919.5_1_19:10197010-10202030:+|nuORF;ENST00000397881.7_2_19:10197589-10201972:+|nuORF;nc|ENSG00000130813|Q9NUL5-4|SHFL;ENSG00000130813|ENST00000253110|SHFL	ENST00000590378.5_1_19:10197589-10200348:+|nuORF	ENST00000590378.5_1_19:10197589-10200348:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.325257	1042.63596	-0.76349	-0.00039879	2.9109	0.0015205	2.1474	0.0011217	522.3266693191918	26.433	0.54094	26.27	26.038	26.579	-0.16331	0.11043	7.9525E-06	NaN	15.642	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301820			35212	4464	24178	24229							0.11634764931227437
KSVSAEINY	9	Unmodified	_KSVSAEINY_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000482595.5_1_2:100018766-100029399:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.80291748046875	2	505.761289	1009.50803	-0.7377	-0.0003731	2.6066	0.0013183	1.8689	0.00094523	505.7625278031162	43.541	0.46661	43.304	43.024	43.49	-0.23737					16	12	2	0	0	0	0.024511	1	3961	3961		13.454	3.1888	1	80936			35213	4957	24179	24230	40577	40577					0.0036515982666287528
KSVSAEINY	9	Unmodified	_KSVSAEINY_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;ENST00000482595.5_1_2:100018766-100029399:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.761289	1009.50803	-0.21932	-0.00011092	1.9039	0.00096292	1.6846	0.00085199	505.76202397826177	43.417	0.24474	43.305	43.145	43.39	-0.11253	0.00043501	-0.00033578	NaN	13.454	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138050			35214	4957	24179	24230							0.0036515982666287528
KSVSMCLPI	9	Carbamidomethyl (C),Oxidation (M)	_KSVSM(Oxidation (M))C(Carbamidomethyl (C))LPI_	KSVSMC(1)LPI	KSVSM(1)CLPI	KSVSMC(49)LPI	KSVSM(49)CLPI	0	1	1			REV__MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|32|3|anti-sense	REV__MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|32|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2744750976562	2	525.769745	1049.52494	-0.2382	-0.00012524	0.57118	0.00030031	0.33298	0.00017507	525.7696377190431	34.178	1.1044	33.953	33.68	34.785	-0.22412					73	27	5	0	0	0	0.6504	1	2539	2539		49.442	10.189	1	9560100	+		35215	36384	24180	24231	40578	40578	470	963			0.0021562111662660755
KSVSMCLPI	9	Carbamidomethyl (C),Oxidation (M)	_KSVSM(Oxidation (M))C(Carbamidomethyl (C))LPI_	KSVSMC(1)LPI	KSVSM(1)CLPI	KSVSMC(44)LPI	KSVSM(44)CLPI	0	1	1			REV__MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|32|3|anti-sense	REV__MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|32|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2745971679688	2	525.769745	1049.52494	-0.33165	-0.00017437	0.7681	0.00040385	0.43645	0.00022947	525.7695742420977	34.074	1.1849	33.867	33.627	34.812	-0.20696					73	29	4	0	0	0	0.72875	1	2524	2524		44.117	6.6086	1	9132600	+		35216	36384	24180	24231	40579	40579	470	963			0.0021562111662660755
KSVSVGGNL	9	Unmodified	_KSVSVGGNL_					0	0	0			REV__ENSG00000136051|ENST00000332180|WASHC4	REV__ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.5304870605469	2	430.745442	859.476331	0.57645	0.0002483	3.2492	0.0013996	3.8256	0.0016479	430.7474379612283	23.474	0.68436	23.273	23.107	23.792	-0.20193					37	15	3	0	0	0	0.024405	1	943	943		27.882	0	1	268680	+		35217	23619	24181	24232	40580	40580					0.04097211863393113
KSVSVNIRF	9	Unmodified	_KSVSVNIRF_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3072509765625	2	525.308741	1048.60293	-0.70319	-0.00036939	1.6476	0.00086551	0.94443	0.00049612	525.308634350156	48.021	0.76929	47.923	47.63	48.399	-0.097549					36	20	2	0	0	0	0.53979	1	4748	4748		56.721	5.3856	1	2352400	+		35218	21310	24182	24233	40581	40581					0.08057138088520333
KSVSVNIRF	9	Unmodified	_KSVSVNIRF_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	525.308741	1048.60293	-0.70319	-0.00036939	1.6476	0.00086551	0.94443	0.00049612	525.308634350156	48.021	0.76929	47.923	47.63	48.399	-0.097549	-0.091012	0.0011998	NaN	56.721	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2352400	+		35219	21310	24182	24233							0.08057138088520333
KSVSVNIRF	9	Unmodified	_KSVSVNIRF_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.308741	1048.60293	-1.0278	-0.0005399	1.312	0.00068922	0.28425	0.00014932	525.3088246960338	48.382	0.73126	48.106	47.701	48.433	-0.27598	0.09117	0.0008472	NaN	56.721	37	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2203900	+		35220	21310	24182	24233							0.08057138088520333
KSVTAFFKW	9	Unmodified	_KSVTAFFKW_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3084106445312	2	557.30821	1112.60187	-0.15075	-8.4012E-05	-0.0385	-2.1456E-05	-0.18925	-0.00010547	557.3080488329923	61.558	0.97156	61.345	61.001	61.972	-0.21375					57	23	4	0	0	0	0.014115	2	6900	6889;6900		223.88	116.87	1	2711300			35221	3392	24183	24234	40582;40583	40583					0.050069237196112226
KSVTAFFKW	9	Unmodified	_KSVTAFFKW_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3082275390625	2	557.30821	1112.60187	-0.88045	-0.00049068	0.57211	0.00031884	-0.30834	-0.00017184	557.3083810735797	61.316	0.7835	61.14	60.833	61.617	-0.1761					53	18	4	0	0	0	0.013946	3	6864	6851;6864;6877		199.89	121.63	1	2641600			35222	3392	24183	24234	40584;40585;40586	40585					0.050069237196112226
KSVTAFFKW	9	Unmodified	_KSVTAFFKW_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.3068237304688	2	557.30821	1112.60187	-0.51454	-0.00028676	0.25364	0.00014135	-0.2609	-0.0001454	557.3081635982593	61.564	0.93	61.306	60.968	61.898	-0.25725					58	22	4	0	0	0	0.014738	2	6873	6873;6884		195.05	88.039	1	2368400			35223	3392	24183	24234	40587;40588	40587					0.050069237196112226
KSVTKPKPL	9	Unmodified	_KSVTKPKPL_					0	0	0		ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.308349609375	2	499.32386	996.633166	-0.22241	-0.00011106	-0.045492	-2.2715E-05	-0.26791	-0.00013377	499.3234883442576	73.038	0.56796	73.038	72.614	73.182	0					14	13	2	0	0	0	0.024511	1	8891	8891		19.104	0	1	67258			35224	7108	24184	24235	40589	40589					0.1347149675369792
KSVTKPKPL	9	Unmodified	_KSVTKPKPL_					0	0	0		ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.32386	996.633166	-0.3274	-0.00016348	-0.099792	-4.9828E-05	-0.42719	-0.00021331	499.3236631950618	73.153	0.66117	72.888	72.595	73.256	-0.26479	-0.025364	-0.00016196	NaN	23.523	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287660			35225	7108	24184	24235							0.1347149675369792
KSVTKPKPL	9	Unmodified	_KSVTKPKPL_					0	0	0		ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.32386	996.633166	-0.71815	-0.00035859	0.54878	0.00027402	-0.16937	-8.4572E-05	499.3237886239327	72.989	0.77509	72.791	72.454	73.229	-0.1981	-0.12264	0.00048573	NaN	23.523	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249910			35226	7108	24184	24235							0.1347149675369792
KSVTLGYLF	9	Unmodified	_KSVTLGYLF_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000530954.1_1_1:154558222-154560745:-|nuORF	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.2938232421875	2	514.294768	1026.57498	-0.027376	-1.4079E-05	0.0012734	6.5488E-07	-0.026103	-1.3425E-05	514.2946469824892	70.457	1.4748	70.2	69.852	71.327	-0.25713					62	37	3	0	0	0	0.086035	6	8217	8197;8206;8217;8227;8237;8246		115.49	37.628	1	10505000			35227	6833	24185	24236	40590;40591;40592;40593;40594;40595	40592					0.06275815108415372
KSVTLGYLF	9	Unmodified	_KSVTLGYLF_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000530954.1_1_1:154558222-154560745:-|nuORF	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2949829101562	2	514.294768	1026.57498	0.31734	0.00016321	-3.2201	-0.0016561	-2.9028	-0.0014929	514.2946035156451	70.384	1.4425	70.17	69.814	71.257	-0.21425					104	36	8	0	0	0	0.086035	5	8188	8177;8188;8200;8213;8221		115.49	43.617	1	12146000			35228	6833	24185	24236	40596;40597;40598;40599;40600	40597					0.06275815108415372
KSVVSAKEL	9	Unmodified	_KSVVSAKEL_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.77313232421875	2	480.78985	959.565146	-0.27481	-0.00013212	4.1257	0.0019836	3.8509	0.0018515	480.7916591346248	93.266	0.46187	93.262	92.99	93.452	-0.0042038					16	10	2	0	0	0	0.024447	1	11825	11825		19.104	0	1	119900	+		35229	19302	24186	24237	40601	40601					0.0837462710304635
KSVWVLPEP	9	Unmodified	_KSVWVLPEP_					0	0	0			REV__ENST00000461769.1_1_1:45269908-45270454:+|nuORF	REV__ENST00000461769.1_1_1:45269908-45270454:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7662353515625	2	527.800217	1053.58588	-1.3929	-0.00073519	1.1956	0.00063106	-0.19729	-0.00010413	527.800656769798	65.6	0.49531	65.387	65.175	65.67	-0.21327					19	11	2	0	0	0	0.024466	1	7532	7532		31.53	11.533	1	147340	+		35230	26814	24187	24238	40602	40602					0.061232174826727714
KSVWVLPEP	9	Unmodified	_KSVWVLPEP_					0	0	0			REV__ENST00000461769.1_1_1:45269908-45270454:+|nuORF	REV__ENST00000461769.1_1_1:45269908-45270454:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.800217	1053.58588	-0.44695	-0.0002359	0.17802	9.3959E-05	-0.26893	-0.00014194	527.800175687644	65.644	0.45271	65.393	65.067	65.52	-0.25112	0.003128	-0.00047414	NaN	24.519	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99475	+		35231	26814	24187	24238							0.061232174826727714
KSWDKVND	8	Unmodified	_KSWDKVND_					0	0	0			REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7763671875	2	496.245806	990.47706	-0.74457	-0.00036949	3.3424	0.0016586	2.5978	0.0012891	496.2468502359552	27.948	1.0221	27.78	27.273	28.295	-0.16816					31	24	2	0	0	0	0.027866	1	1570	1570		60.972	2.19	1	132400	+		35232	21935	24188	24239	40603	40603					-0.018559934875725048
KSWDKVND	8	Unmodified	_KSWDKVND_					0	0	0			REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.77667236328125	2	496.245806	990.47706	-0.3058	-0.00015175	-1.6088	-0.00079834	-1.9146	-0.00095009	496.242628514175	27.571	0.53912	27.415	27.185	27.724	-0.15664					28	12	4	0	0	0	0.027866	1	1545	1545		76.774	0	1	172220	+		35233	21935	24188	24239	40604	40604					-0.018559934875725048
KSWILPLM	8	Unmodified	_KSWILPLM_					0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3057861328125	2	494.288431	986.562309	0.40507	0.00020022	2.7515	0.0013601	3.1566	0.0015603	494.289822353863	85.564	0.67564	85.427	85.113	85.789	-0.13753					30	15	3	0	0	0	0.027866	1	10323	10323		40.573	0	1	117020	+		35234	19902	24189	24240	40605	40605					0.06849080444555966
KSWLLIID	8	Unmodified	_KSWLLIID_					0	0	0			REV__ENST00000373669.6_1_X:71417338-71417386:+|nuORF	REV__ENST00000373669.6_1_X:71417338-71417386:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3059997558594	2	494.29731	986.580068	0.5525	0.0002731	-0.63252	-0.00031265	-0.080019	-3.9553E-05	494.2968199182469	84.792	0.83198	84.654	84.323	85.155	-0.13789					45	19	3	0	0	0	0.027866	1	10297	10297		76.774	12.567	1	704980	+		35235	31267	24190	24241	40606	40606					0.08624118971056305
KSWLSRSV	8	Unmodified	_KSWLSRSV_					0	0	0		ENST00000464942.6_1_12:122710297-122710606:-|nuORF;nc|ENSG00000184047|Q9NR28-3|DIABLO;ENSG00000184047|ENST00000464942|DIABLO	ENST00000464942.6_1_12:122710297-122710606:-|nuORF	ENST00000464942.6_1_12:122710297-122710606:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.23016357421875	2	481.774534	961.534515	-0.22414	-0.00010799	3.3403	0.0016093	3.1161	0.0015013	481.7758562206081	28.755	0.38237	28.603	28.442	28.824	-0.15129					13	8	2	0	0	0	0.027866	1	1662	1662		45.972	0	1	67552			35236	9302	24191	24242	40607	40607					0.05220893508669633
KSWQGVTIYF	10	Unmodified	_KSWQGVTIYF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	614.8218383789062	2	614.821681	1227.62881	-0.58319	-0.00035856	0.75273	0.00046279	0.16953	0.00010423	614.8220224626506	72.938	0.58029	72.74	72.497	73.077	-0.1981					32	13	3	0	0	0	0.58878	1	8556	8556		78.264	16.156	1	893420			35237	3346	24192	24243	40608	40608					0.024099875401361714
KSWQGVTIYF	10	Unmodified	_KSWQGVTIYF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	614.821681	1227.62881	-0.72067	-0.00044308	-5.1796	-0.0031845	-5.9003	-0.0036276	614.818390937067	72.683	0.50074	72.683	72.493	72.994	0	-0.10184	-0.0047172	NaN	78.264	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122950			35238	3346	24192	24243							0.024099875401361714
KSWQGVTIYF	10	Unmodified	_KSWQGVTIYF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	614.821681	1227.62881	0.26538	0.00016316	-6.2061	-0.0038156	-5.9407	-0.0036525	614.8175464991463	73.021	0.60992	72.74	72.547	73.157	-0.28124	-0.044833	-0.0059794	NaN	78.264	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135260			35239	3346	24192	24243							0.024099875401361714
KSWQGVTIYF	10	Unmodified	_KSWQGVTIYF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	614.821681	1227.62881	-0.53612	-0.00032962	-5.5997	-0.0034428	-6.1358	-0.0037724	614.8180842428626	72.747	0.45747	72.757	72.57	73.027	0.0096512	-0.028244	-0.0052338	NaN	78.264	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187170			35240	3346	24192	24243							0.024099875401361714
KSWQGVTIYF	10	Unmodified	_KSWQGVTIYF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	614.821681	1227.62881	-1.1619	-0.00071437	1.8757	0.0011532	0.71375	0.00043883	614.8224285226393	73.147	0.67738	72.87	72.497	73.174	-0.2769	0.084913	0.0039582	NaN	78.264	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	651820			35241	3346	24192	24243							0.024099875401361714
KSWQGVTIYF	10	Unmodified	_KSWQGVTIYF_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	614.821681	1227.62881	-0.79266	-0.00048734	1.3526	0.00083158	0.55989	0.00034423	614.8222844357895	73.185	0.53605	72.92	72.681	73.217	-0.26479	0.13503	0.003315	NaN	78.264	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863690			35242	3346	24192	24243							0.024099875401361714
KSWSLDYII	9	Unmodified	_KSWSLDYII_					0	0	0			REV__ENSG00000135541|ENST00000265602|AHI1	REV__ENSG00000135541|ENST00000265602|AHI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.7932739257812	2	562.802957	1123.59136	0.24691	0.00013896	-3.45	-0.0019417	-3.2031	-0.0018027	562.8010265733235	55.205	0.33889	55.205	55.014	55.353	0					16	9	2	0	0	0	0.023007	1	6095	6095		56.721	13.07	1	187830	+		35243	23557	24193	24244	40609	40609					0.03450896274512161
KSWTASSSY	9	Unmodified	_KSWTASSSY_					0	0	0		ENSG00000134013|ENST00000389131|LOXL2	ENSG00000134013|ENST00000389131|LOXL2	ENSG00000134013|ENST00000389131|LOXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80255126953125	2	508.737814	1015.46108	0.2673	0.00013599	1.0232	0.00052054	1.2905	0.00065652	508.7371989500817	37.18	0.30119	36.987	36.889	37.19	-0.193					9	7	2	0	0	0	0.024447	1	2963	2963		25.574	1.3713	1	60292			35244	4744	24194	24245	40610	40610					-0.046036997244755185
KSWWEKGK	8	Unmodified	_KSWWEKGK_					0	0	0		ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.27099609375	2	524.782359	1047.55016	-1.9106	-0.0010026	1.1424	0.00059953	-0.76813	-0.0004031	524.7828665637358	30.054	1.8146	30.054	28.778	30.592	0					80	44	3	0	0	0	0.027866	1	1880	1880		23.042	0	1	406920			35245	2967	24195	24246	40611	40611					0.028291800257193245
KSWYQKLL	8	Unmodified	_KSWYQKLL_					0	0	0		PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant;nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	PIK3C2G|p.A1177Vfs*29|1|0.17|ENSG00000139144|chr12:18562764-18562765|-/TGTTTGT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7745361328125	2	533.30821	1064.60187	-0.52377	-0.00027933	-0.46446	-0.0002477	-0.98823	-0.00052703	533.8088016066941	47.71	0.61729	47.612	47.349	47.966	-0.097553					27	16	2	0	0	0	0.027866	1	4727	4727		26.693	10.22	1	413700			35246	5302	24196	24247	40612	40612					0.07214923719629951
KSYAGEKIL	9	Unmodified	_KSYAGEKIL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7895812988281	2	504.78985	1007.56515	-0.5185	-0.00026173	-0.11909	-6.0118E-05	-0.6376	-0.00032185	504.7896284859397	35.079	0.98839	34.866	34.56	35.548	-0.21246					63	24	4	0	0	0	0.19099	1	2664	2664		90.37	1.7269	1	4053700			35247	3327	24197	24248	40613	40613					0.06166627103038991
KSYAGEKIL	9	Unmodified	_KSYAGEKIL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7900390625	2	504.78985	1007.56515	-0.70311	-0.00035492	-0.015261	-7.7034E-06	-0.71837	-0.00036263	504.78970365411243	35.038	0.8583	34.851	34.519	35.377	-0.18675					60	21	4	0	0	0	0.086035	1	2628	2628		115.49	27.798	1	3912700			35248	3327	24197	24248	40614	40614					0.06166627103038991
KSYAGEKIL	9	Unmodified	_KSYAGEKIL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.78985	1007.56515	-0.046484	-2.3465E-05	-0.54418	-0.00027469	-0.59066	-0.00029816	504.7894254750642	35.134	0.82737	34.919	34.63	35.457	-0.21556	0.039915	-0.00029494	NaN	115.49	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4124400			35249	3327	24197	24248							0.06166627103038991
KSYAGYQTL	9	Unmodified	_KSYAGYQTL_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.7634887695312	2	515.763832	1029.51311	-0.21466	-0.00011071	-0.32761	-0.00016897	-0.54227	-0.00027968	515.763626586396	42.092	1.5376	41.969	41.267	42.805	-0.12299					105	40	5	0	0	0	0.013442	4	3773	3761;3773;3785;3799		177.3	67.826	1	8622600			35250	18030	24198	24249	40615;40616;40617;40618	40616					-0.00046536310719602625
KSYAGYQTL	9	Unmodified	_KSYAGYQTL_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.763427734375	2	515.763832	1029.51311	-0.38415	-0.00019813	-0.12829	-6.6166E-05	-0.51244	-0.0002643	515.7637555312174	42.288	1.2621	42.056	41.583	42.845	-0.23186					82	33	4	0	0	0	0.038547	3	3802	3777;3789;3802		134.77	24.668	1	9553700			35251	18030	24198	24249	40619;40620;40621	40621					-0.00046536310719602625
KSYAGYQTL	9	Unmodified	_KSYAGYQTL_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.7628784179688	2	515.763832	1029.51311	-0.21437	-0.00011057	-0.3099	-0.00015984	-0.52428	-0.0002704	515.763561379402	42.325	1.1803	42.095	41.688	42.869	-0.23029					124	31	7	0	0	0	0.016542	3	3785	3785;3795;3807		154.12	41.707	1	8730200			35252	18030	24198	24249	40622;40623;40624	40622					-0.00046536310719602625
KSYAGYQTL	9	Unmodified	_KSYAGYQTL_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.763832	1029.51311	-0.32086	-0.00016549	0.069847	3.6025E-05	-0.25102	-0.00012947	515.7635581548793	42.075	0.39892	41.943	41.716	42.115	-0.13219	-0.073037	0.00030047	NaN	177.3	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101380			35253	18030	24198	24249							-0.00046536310719602625
KSYELPDGQVI	11	Unmodified	_KSYELPDGQVI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.8273315429688	2	624.82716	1247.63977	0.010632	6.6433E-06	-0.021502	-1.3435E-05	-0.01087	-6.7919E-06	624.82703262961	61.322	0.96591	61.116	60.543	61.509	-0.20599					61	23	4	0	0	0	0.51058	1	6864	6864		75.652	18.931	1	1605500			35254	1564;9900;9925;9702	24199	24250	40625	40625					0.02585345123748084
KSYELPDGQVI	11	Unmodified	_KSYELPDGQVI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.8271484375	2	624.82716	1247.63977	-1.7998	-0.0011245	1.76	0.0010997	-0.039792	-2.4863E-05	624.8281459602763	61.091	0.92685	60.915	60.403	61.33	-0.1761					60	22	4	0	0	0	0.51058	1	6816	6816		75.652	6.8654	1	1566000			35255	1564;9900;9925;9702	24199	24250	40626	40626					0.02585345123748084
KSYELPDGQVI	11	Unmodified	_KSYELPDGQVI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000222038|ENST00000409602|POTEJ;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000163017|ENST00000345517|ACTG2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000188219|ENST00000683005|POTEE	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	624.8270263671875	2	624.82716	1247.63977	-0.61195	-0.00038237	0.45877	0.00028665	-0.15318	-9.5712E-05	624.8273920314392	61.334	1.1728	61.077	60.291	61.464	-0.25725					67	28	4	0	0	0	0.23615	1	6843	6843		95.483	21.228	1	1803100			35256	1564;9900;9925;9702	24199	24250	40627	40627					0.02585345123748084
KSYLGSEADVW	11	Unmodified	_KSYLGSEADVW_					0	0	0		nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK	nc|ENSG00000165304|Q14680-5|MELK	nc|ENSG00000165304|Q14680-5|MELK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.8037719726562	2	627.803685	1253.59282	0.20526	0.00012887	-0.44114	-0.00027695	-0.23588	-0.00014809	627.8033063779081	60.163	1.2054	59.966	59.499	60.704	-0.19742					83	30	4	0	0	0	0.0056542	3	6686	6675;6686;6696		145.46	75.833	1	5979000			35257	7396	24200	24251	40628;40629;40630	40629					-0.02383514427378941
KSYLGSEADVW	11	Unmodified	_KSYLGSEADVW_					0	0	0		nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK	nc|ENSG00000165304|Q14680-5|MELK	nc|ENSG00000165304|Q14680-5|MELK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	627.8031005859375	2	627.803685	1253.59282	-0.59977	-0.00037654	0.16354	0.00010267	-0.43623	-0.00027387	627.8038380947089	59.969	1.3219	59.793	59.199	60.521	-0.1761					96	33	6	0	0	0	0.054972	4	6650	6650;6662;6672;6686		120.27	39.818	1	6511400			35258	7396	24200	24251	40631;40632;40633;40634	40631					-0.02383514427378941
KSYLGSEADVW	11	Unmodified	_KSYLGSEADVW_					0	0	0		nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK	nc|ENSG00000165304|Q14680-5|MELK	nc|ENSG00000165304|Q14680-5|MELK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	627.8031616210938	2	627.803685	1253.59282	-0.40596	-0.00025486	0.051216	3.2154E-05	-0.35474	-0.00022271	627.8036559683532	60.193	1.0161	59.944	59.533	60.55	-0.24842					80	25	4	0	0	0	0.0098899	4	6674	6662;6674;6685;6698		140.11	74.309	1	6075600			35259	7396	24200	24251	40635;40636;40637;40638	40636					-0.02383514427378941
KSYLLLYK	8	Unmodified	_KSYLLLYK_					0	0	0			REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	REV__ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2948608398438	2	514.312961	1026.61137	-0.142	-7.3033E-05	-1.5507	-0.00079755	-1.6927	-0.00087058	514.8121698061385	53.915	0.2796	53.669	53.525	53.804	-0.2453					12	8	2	0	0	0	0.027866	1	5693	5693		24.203	11.996	1	198470	+		35260	34082	24201	24252	40639	40639					0.0991269200512761
KSYLTYSM	8	Unmodified	_KSYLTYSM_					0	0	0			REV__ENSG00000164073|ENST00000641686|MFSD8	REV__ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7413024902344	2	496.741511	991.468469	-1.1579	-0.0005752	0.52883	0.00026269	-0.62911	-0.00031251	496.7416700945716	26.127	0.94948	25.963	25.716	26.666	-0.16331					84	26	4	0	0	0	1.0009	1	1357	1357		37.159	8.0096	1	7449900	+		35261	25685	24202	24253	40640	40640					-0.027606834484117826
KSYRSFASR	9	Unmodified	_KSYRSFASR_					0	0	0			REV__ENST00000241527.10_1_2:242035813-242036773:-|nuORF	REV__ENST00000241527.10_1_2:242035813-242036773:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.7479248046875	2	551.293622	1100.57269	-0.038944	-2.1469E-05	3.065	0.0016897	3.0261	0.0016683	551.2951479280971	58.389	0.36037	58.199	57.978	58.338	-0.19018					13	8	2	0	0	0	0.024447	1	6412	6412		25.574	13.367	1	490080	+		35262	29452	24203	24254	40641	40641					0.026427794233086388
KSYTDMSRNI	10	Unmodified	_KSYTDMSRNI_					0	0	0			REV__ENSG00000164615|ENST00000297156|CAMLG	REV__ENSG00000164615|ENST00000297156|CAMLG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	3	405.53265	1213.57612	-0.45707	-0.00018536	1.6663	0.00067574	1.2092	0.00049039	405.53327590617454	27.281	0.29522	27.125	26.93	27.225	-0.15664					9	6	2	0	0	0	0.03519	1	1470	1470		30.569	0	1	29964	+		35263	25778	24204	24255	40642	40642					-0.022123385849681654
KSYVQGVTW	9	Unmodified	_KSYVQGVTW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.281005859375	2	534.279649	1066.54475	-0.99351	-0.00053081	0.095774	5.117E-05	-0.89773	-0.00047964	534.2797049766724	54.187	0.83602	54.051	53.598	54.434	-0.13616					51	25	3	0	0	0	0.10464	1	5744	5744		109.48	21.301	1	3008700			35264	6733	24205	24256	40643	40643					0.014134564432424668
KSYVQGVTW	9	Unmodified	_KSYVQGVTW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.280517578125	2	534.279649	1066.54475	-0.45772	-0.00024455	-0.38938	-0.00020804	-0.8471	-0.00045259	534.2793781859287	54.312	0.75795	54.067	53.687	54.445	-0.2453					52	23	3	0	0	0	0.28047	1	5767	5767		78.264	16.573	1	3494000			35265	6733	24205	24256	40644	40644					0.014134564432424668
KSYVQGVTW	9	Unmodified	_KSYVQGVTW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2802124023438	2	534.279649	1066.54475	-0.22279	-0.00011903	-0.59591	-0.00031838	-0.8187	-0.00043742	534.2792773685827	54.234	0.73855	54.036	53.588	54.327	-0.19739					44	21	3	0	0	0	0.17845	1	5743	5743		93.143	2.5424	1	2765300			35266	6733	24205	24256	40645	40645					0.014134564432424668
KSYVQGVTW	9	Unmodified	_KSYVQGVTW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.279649	1066.54475	-0.39698	-0.0002121	5.2656	0.0028133	4.8686	0.0026012	534.2819923921951	53.728	0.39739	53.728	53.509	53.907	0	-0.13588	0.0056781	NaN	109.48	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167870			35267	6733	24205	24256							0.014134564432424668
KSYVQGVTW	9	Unmodified	_KSYVQGVTW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.279649	1066.54475	-0.78328	-0.00041849	4.7216	0.0025227	3.9384	0.0021042	534.2821681298587	53.84	0.3984	53.692	53.456	53.855	-0.14723	-0.1715	0.0050968	NaN	109.48	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206260			35268	6733	24205	24256							0.014134564432424668
KSYVQGVTW	9	Unmodified	_KSYVQGVTW_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B;ENST00000480486.1_1_21:37758395-37770302:+|nuORF	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.279649	1066.54475	-1.0496	-0.00056078	5.2766	0.0028192	4.227	0.0022584	534.2823821307004	53.514	0.36451	53.61	53.407	53.771	0.095669	-0.2542	0.0056899	NaN	109.48	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221270			35269	6733	24205	24256							0.014134564432424668
KSYWKRHMV	9	Unmodified	_KSYWKRHMV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827;ENST00000508995.1_1_4:146791609-146813520:-|nuORF	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.18707275390625	3	412.22197	1233.64408	-0.45096	-0.0001859	2.5529	0.0010524	2.102	0.00086647	412.22301261428447	35.688	0.83362	35.473	34.874	35.708	-0.21556					23	21	2	0	0	0	0.024527	1	2764	2764		12.812	0	1	235180			35270	6213	24206	24257	40646	40646					0.03660575856338255
KSYWKRHMV	9	Unmodified	_KSYWKRHMV_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827;ENST00000508995.1_1_4:146791609-146813520:-|nuORF	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	412.22197	1233.64408	-0.26048	-0.00010738	2.09	0.00086156	1.8296	0.00075419	412.22272314229025	35.613	0.58569	35.4	34.963	35.548	-0.21246	-0.036144	-0.00030857	NaN	18.262	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157170			35271	6213	24206	24257							0.03660575856338255
KTADPTNAGI	10	Unmodified	_KTADPTNAGI_					0	0	0			REV__ENSG00000161031|ENST00000340880|PGLYRP2	REV__ENSG00000161031|ENST00000340880|PGLYRP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2596130371094	2	494.258914	986.503274	-0.21912	-0.0001083	2.0874	0.0010317	1.8683	0.00092342	494.2593126825694	83.15	2.0039	83.15	81.95	83.954	0					75	46	3	0	0	0	0.69662	1	10398	10398		67.494	1.0644	1	496000	+		35272	25371	24207	24258	40647	40647					0.009482756838906425
KTADRSNFK	9	Unmodified	_KTADRSNFK_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7855834960938	2	533.78563	1065.55671	-0.081118	-4.3299E-05	-1.0617	-0.00056672	-1.1428	-0.00061002	533.7849534190104	23.971	1.2424	23.756	23.094	24.336	-0.2151					55	28	3	0	0	0	0.32811	1	1021	1021		71.877	11.759	1	2365700			35273	1766	24208	24259	40648	40648					0.026550731864290356
KTAEDMNLF	9	Unmodified	_KTAEDMNLF_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000521571.6_1_11:61607769-61608033:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.75537109375	2	534.755149	1067.49575	-0.49976	-0.00026725	0.51071	0.0002731	0.010948	5.8544E-06	534.7547643529468	56.411	1.2981	56.255	55.82	57.118	-0.15656					72	33	3	0	0	0	0.26413	2	6132	6106;6132		80.455	23.734	1	5873500			35274	4832	24209	24260	40649;40650	40650					-0.035301999080502355
KTAEDMNLF	9	Unmodified	_KTAEDMNLF_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000521571.6_1_11:61607769-61608033:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.7550048828125	2	534.755149	1067.49575	-0.15269	-8.1651E-05	0.3195	0.00017085	0.16681	8.9201E-05	534.7546621679529	56.513	1.2378	56.298	55.959	57.197	-0.21474					80	32	4	0	0	0	0.32064	2	6143	6130;6143		72.879	12.198	1	6152400			35275	4832	24209	24260	40651;40652	40652					-0.035301999080502355
KTAEDMNLF	9	Unmodified	_KTAEDMNLF_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000521571.6_1_11:61607769-61608033:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.75537109375	2	534.755149	1067.49575	-0.3788	-0.00020257	0.11954	6.3926E-05	-0.25926	-0.00013864	534.7548088683159	56.524	1.4769	56.299	55.806	57.283	-0.2248					82	38	3	0	0	0	0.14087	3	6118	6107;6118;6130		101.46	19.219	1	5535200			35276	4832	24209	24260	40653;40654;40655	40654					-0.035301999080502355
KTAENFRQF	9	Unmodified	_KTAENFRQF_					0	0	0		ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.793701171875	2	570.793455	1139.57236	0.056316	3.2145E-05	-0.21567	-0.0001231	-0.15936	-9.096E-05	570.7932669433376	34.885	0.63326	34.669	34.429	35.062	-0.21555					43	15	4	0	0	0	0.34489	1	2618	2618		69.628	28.201	1	1279600			35277	8225	24210	24261	40656	40656					0.008153597034606719
KTAENFRQF	9	Unmodified	_KTAENFRQF_					0	0	0		ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.7935791015625	2	570.793455	1139.57236	-0.18459	-0.00010536	-0.0088361	-5.0436E-06	-0.19342	-0.0001104	570.7933219518346	34.779	0.68723	34.572	34.242	34.93	-0.20696					46	16	4	0	0	0	0.15388	1	2593	2593		98.582	21.264	1	1175400			35278	8225	24210	24261	40657	40657					0.008153597034606719
KTAENFRQF	9	Unmodified	_KTAENFRQF_					0	0	0		ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	ENSG00000171960|ENST00000304979|PPIH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.7936401367188	2	570.793455	1139.57236	-0.40402	-0.00023061	0.20226	0.00011545	-0.20176	-0.00011516	570.7934711757468	34.759	0.58839	34.572	34.323	34.911	-0.18675					43	14	4	0	0	0	0.094442	1	2574	2574		112.41	48.877	1	1342400			35279	8225	24210	24261	40658	40658					0.008153597034606719
KTAFYDNSQ	9	Unmodified	_KTAFYDNSQ_					0	0	0			REV__ENST00000409304.5_1_2:224840459-224840564:-|nuORF	REV__ENST00000409304.5_1_2:224840459-224840564:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.780517578125	2	537.248546	1072.48254	-1.2167	-0.00065368	-0.7333	-0.00039396	-1.95	-0.0010476	537.2473781529236	35.499	0.30485	35.499	35.343	35.647	0					11	7	2	0	0	0	0.024367	1	2726	2726		44.377	1.981	1	76456	+		35280	31956	24211	24262	40659	40659					-0.05080314695760535
KTALLGLNN	9	Unmodified	_KTALLGLNN_					0	0	0		ENSG00000187630|ENST00000335125|DHRS4L2;nc|ENSG00000187630|Q6PKH6-2|DHRS4L2	ENSG00000187630|ENST00000335125|DHRS4L2	ENSG00000187630|ENST00000335125|DHRS4L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.761474609375	2	472.282192	942.549831	0.60285	0.00028471	-0.93854	-0.00044326	-0.3357	-0.00015854	472.281602854574	32.8	1.057	32.863	32.125	33.182	0.062885					57	27	4	0	0	0	0.024344	1	2182	2182		54.776	24.459	1	850420			35281	9644	24212	24263	40660	40660					0.0762576030585933
KTALLLGRA	9	Unmodified	_KTALLLGRA_					0	0	0			REV__ENST00000566703.1_1_16:30776326-30777900:+|nuORF	REV__ENST00000566703.1_1_16:30776326-30777900:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.8082275390625	2	471.808377	941.6022	0.89455	0.00042206	-1.07	-0.00050483	-0.17543	-8.2771E-05	471.8076820126988	19.53	0.84319	19.33	18.662	19.505	-0.2001					33	16	4	0	0	0	0.96906	1	438	438		26.693	4.733	1	247660	+		35282	21397	24213	24264	40661	40661					0.12906343439465218
KTALRDLKA	9	Unmodified	_KTALRDLKA_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7724609375	2	508.316566	1014.61858	-0.24201	-0.00012302	-0.33548	-0.00017053	-0.57748	-0.00029354	508.3163694815057	33.746	0.56049	33.802	33.577	34.137	0.056572					37	13	4	0	0	0	0.023454	1	2383	2383		62.107	8.756	1	431860	+		35283	24273	24214	24265	40662	40662					0.11185424605560002
KTAMKVKK	8	Unmodified	_KTAMKVKK_					0	0	0			REV__nc|nan|Q6PH81-2|C16orf87	REV__nc|nan|Q6PH81-2|C16orf87	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.3004150390625	2	467.29933	932.584108	-0.073121	-3.4169E-05	2.8131	0.0013146	2.74	0.0012804	467.3005438633363	92.34	1.0406	92.199	91.748	92.788	-0.14131					54	24	4	0	0	0	1.0574	1	11344	11344		11.511	3.2797	1	951940	+		35284	25003	24215	24266	40663	40663					0.11511885193112903
KTANVCWSA	9	Unmodified	_KTANVCWSA_					0	0	0			REV__ENST00000360289.6_1_10:71161391-71161466:+|nuORF	REV__ENST00000360289.6_1_10:71161391-71161466:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2579040527344	2	490.236927	978.459301	0.26919	0.00013197	1.8637	0.00091365	2.1329	0.0010456	490.23801230422174	104.79	0.4024	104.79	104.64	105.04	0					16	13	3	0	0	0	0.024374	1	13464	13464		49.442	12.282	1	70984	+		35285	30903	24216	24267	40664	40664					-0.030790320140795302
KTAPRQLH	8	Unmodified	_KTAPRQLH_					0	0	0			REV__ENST00000338588.7_1_7:135418402-135418726:-|nuORF	REV__ENST00000338588.7_1_7:135418402-135418726:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.31329345703125	2	475.780151	949.545748	2.9477	0.0014025	-2.7074	-0.0012881	0.2403	0.00011433	475.77877134102823	18.699	0.2943	18.699	18.529	18.823	0					9	5	2	0	0	0	0.027866	1	315	315		18.324	0	1	20110	+		35286	30588	24217	24268	40665	40665					0.06895715602797736
KTARLIPNAI	10	Unmodified	_KTARLIPNAI_					0	0	0		ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000486457.5_1_3:113557756-113601627:+|nuORF;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000178075|ENST00000358160|GRAMD1C;nc|ENSG00000023171|Q3KR37-2|GRAMD1B	ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.27734375	2	548.84549	1095.67643	-0.20082	-0.00011022	3.864	0.0021208	3.6632	0.0020105	548.8472951766585	34.88	0.3645	34.665	34.548	34.913	-0.21556					11	8	2	0	0	0	0.03519	1	2629	2629		31.53	16.665	1	71052			35287	8789;967	24218	24269	40666	40666					0.1324168653097786
KTARLIPNAI	10	Unmodified	_KTARLIPNAI_					0	0	0		ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000486457.5_1_3:113557756-113601627:+|nuORF;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000178075|ENST00000358160|GRAMD1C;nc|ENSG00000023171|Q3KR37-2|GRAMD1B	ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.276123046875	2	548.84549	1095.67643	-0.42874	-0.00023531	3.9878	0.0021887	3.559	0.0019534	548.8476066058817	34.918	0.32704	34.705	34.479	34.806	-0.21246					12	7	2	0	0	0	0.03519	1	2611	2611		24.519	8.046	1	89731			35288	8789;967	24218	24269	40667	40667					0.1324168653097786
KTARQTENV	9	Unmodified	_KTARQTENV_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8001708984375	2	523.783087	1045.55162	-0.3721	-0.0001949	-3.4224	-0.0017926	-3.7945	-0.0019875	523.7805389499689	48.202	0.36867	48.269	48.117	48.486	0.066795					15	9	2	0	0	0	0.024447	1	4872	4872		19.104	0	1	151920			35289	4422	24219	24270	40668	40668					0.030667693238001448
KTARTIYCPQV	11	Unmodified	_KTARTIYCPQV_					0	0	0			REV__CON__A2VCT4	REV__CON__A2VCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.8482055664062	2	640.344997	1278.67544	1.0202	0.0006533	-0.51216	-0.00032796	0.50807	0.00032534	640.3451500409111	105.2	0.5163	105.2	105.02	105.54	0.00096893					27	16	3	0	0	0	1.013	1	13485	13485		33.922	3.6039	1	364930	+	+	35290	19521	24220	24271	40669	40669					0.047251040997707605
KTARTLLEN	9	Unmodified	_KTARTLLEN_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3032836914062	2	523.303655	1044.59276	-0.64645	-0.00033829	0.63779	0.00033376	-0.008659	-4.5313E-06	523.3039264969486	30.072	0.63937	29.828	29.482	30.122	-0.24415					39	14	4	0	0	0	0.43628	1	1897	1897		63.534	6.8128	1	775960	+		35291	28198	24221	24272	40670	40670					0.07224530363305348
KTARTLLEN	9	Unmodified	_KTARTLLEN_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3029174804688	2	523.303655	1044.59276	-0.7287	-0.00038133	0.55108	0.00028838	-0.17762	-9.2947E-05	523.3038614259895	29.972	0.72249	29.795	29.443	30.165	-0.17706					39	16	4	0	0	0	0.35556	1	1867	1867		68.846	7.1549	1	778370	+		35292	28198	24221	24272	40671	40671					0.07224530363305348
KTARTLLEN	9	Unmodified	_KTARTLLEN_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3031616210938	2	523.303655	1044.59276	-0.039517	-2.0679E-05	-0.22024	-0.00011525	-0.25975	-0.00013593	523.30348976591	29.968	0.67683	29.818	29.542	30.219	-0.14952					44	15	4	0	0	0	0.41161	2	1867	1854;1867		65.157	6.7628	1	752770	+		35293	28198	24221	24272	40672;40673	40673					0.07224530363305348
KTASFECEV	9	Unmodified	_KTASFECEV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7680969238281	2	507.23405	1012.45355	-0.9079	-0.00046052	1.1334	0.0005749	0.2255	0.00011438	507.23435775524274	61.148	0.67633	60.894	60.544	61.221	-0.25373					22	16	2	0	0	0	0.024397	1	6830	6830		39.253	3.6345	1	270440			35294	6479;18400	24222	24273	40674	40674					-0.05218175316394991
KTASINQNV	9	Unmodified	_KTASINQNV_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7669982910156	2	487.766906	973.519259	-0.9615	-0.00046899	0.68176	0.00033254	-0.27973	-0.00013644	487.76718544445123	28.47	0.6285	28.47	28.191	28.82	0					20	14	2	0	0	0	0.32064	1	1662	1662		72.879	12.761	1	1823200			35295	3876	24223	24274	40675	40675					0.031439819208117115
KTASINQNV	9	Unmodified	_KTASINQNV_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7668762207031	2	487.766906	973.519259	-0.71365	-0.00034809	1.0565	0.0005153	0.34281	0.00016721	487.76700115339816	28.108	0.87359	28.189	27.91	28.784	0.080811					32	20	2	0	0	0	0.71548	1	1552	1552		45.022	4.244	1	1527100			35296	3876	24223	24274	40676	40676					0.031439819208117115
KTASINQNV	9	Unmodified	_KTASINQNV_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.766906	973.519259	-1.3851	-0.00067563	0.83291	0.00040626	-0.55224	-0.00026937	487.7672387717425	28.548	0.41276	28.302	28.121	28.534	-0.24524	-0.0086221	0.00022918	NaN	72.879	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339430			35297	3876	24223	24274							0.031439819208117115
KTASINQNV	9	Unmodified	_KTASINQNV_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.766906	973.519259	-0.56773	-0.00027692	-0.22386	-0.00010919	-0.79159	-0.00038611	487.7667758458193	28.403	0.58779	28.234	27.966	28.554	-0.16897	-0.077046	-0.00080174	NaN	72.879	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385450			35298	3876	24223	24274							0.031439819208117115
KTASINQNV	9	Unmodified	_KTASINQNV_					0	0	0		ENST00000533466.1_1_11:28098218-28119398:-|nuORF;ENSG00000121621|ENST00000263181|KIF18A	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	ENST00000533466.1_1_11:28098218-28119398:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.766906	973.519259	-0.26437	-0.00012895	-0.23989	-0.00011701	-0.50427	-0.00024596	487.7667103601146	28.427	0.52981	28.275	28.04	28.57	-0.15195	-0.035673	-0.00081738	NaN	72.879	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375210			35299	3876	24223	24274							0.031439819208117115
KTASLKYLLN	10	Unmodified	_KTASLKYLLN_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8427734375	2	575.845156	1149.67576	-0.82546	-0.00047534	-2.9075	-0.0016743	-3.7329	-0.0021496	575.8433114529906	88.92	2.4021	88.92	87.573	89.975	0					191	57	4	0	0	0	0.83673	1	11214	11214		58.23	3.5076	1	1520800	+		35300	22782	24224	24275	40677	40677					0.10690847091314026
KTASLKYLLN	10	Unmodified	_KTASLKYLLN_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8431396484375	2	575.845156	1149.67576	0.50468	0.00029062	-4.1927	-0.0024144	-3.6881	-0.0021238	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.98527	1	11155	11155		47.96	0.30219	1	1452500	+		35301	22782	24224	24275	40678	40678					0.10690847091314026
KTASSPLSHS	10	Unmodified	_KTASSPLSHS_					0	0	0		ENSG00000189127|ENST00000338682|ANKRD34B	ENSG00000189127|ENST00000338682|ANKRD34B	ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.31585693359375	2	507.764363	1013.51417	0.21369	0.00010851	4.4799	0.0022747	4.6936	0.0023832	507.76462632448056	69.208	0.29678	68.916	68.713	69.01	-0.29291					8	5	2	0	0	0	0.03519	1	8263	8263		65.465	0	1	74324			35302	9791	24225	24276	40679	40679					0.00795678058204885
KTAVGVQLI	9	Unmodified	_KTAVGVQLI_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7520446777344	2	464.794935	927.575317	-1.4893	-0.00069223	2.3926	0.0011121	0.9033	0.00041985	464.7959863830975	29.659	0.44374	29.659	29.37	29.814	0					16	10	2	0	0	0	0.02435	1	1853	1853		42.396	0	1	96443	+		35303	36819	24226	24277	40680	40680					0.1086323482828675
KTCIQGLAGL	10	Unmodified	_KTCIQGLAGL_					0	0	0		TLR4|p.M243I|1|0.58|ENSG00000136869|chr9:117712857-117712857|G/T|missense_variant;nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4	TLR4|p.M243I|1|0.58|ENSG00000136869|chr9:117712857-117712857|G/T|missense_variant	TLR4|p.M243I|1|0.58|ENSG00000136869|chr9:117712857-117712857|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2870788574219	2	502.283877	1002.5532	-0.28319	-0.00014224	1.1633	0.00058432	0.88014	0.00044208	502.2844283909736	44.254	1.1568	44.291	43.456	44.612	0.0369					69	32	4	0	0	0	1.0508	1	4121	4121		39.253	3.6345	1	18948000			35304	5058	24227	24278	40681	40681					0.05202687088217317
KTCVMCEF	8	Carbamidomethyl (C),Oxidation (M)	_KTCVM(Oxidation (M))C(Carbamidomethyl (C))EF_	KTCVMC(1)EF	KTCVM(1)CEF	KTC(-41)VMC(41)EF	KTCVM(89)CEF	0	1	1			REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	REV__nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2568359375	2	517.211206	1032.40786	1.2408	0.00064176	2.1989	0.0011373	3.4397	0.0017791	517.2121079715666	25.031	0.34978	24.86	24.643	24.993	-0.17151					10	7	2	0	0	0	0.027866	1	1132	1132		88.643	25.337	2	27607	+		35305	26699	24228	24279	40682	40682	353	787			-0.10704860094642754
KTDADTYW	8	Unmodified	_KTDADTYW_					0	0	0		ENST00000583544.1_1_17:72700560-72709059:-|nuORF;nc|ENSG00000186074|Q8TDQ1-5|CD300LF;ENSG00000186074|ENST00000326165|CD300LF;nc|ENSG00000186074|Q8TDQ1-3|CD300LF;nc|ENSG00000186074|Q8TDQ1-4|CD300LF;nc|ENSG00000186074|Q8TDQ1-2|CD300LF;nc|ENSG00000186074|Q8TDQ1-6|CD300LF	ENST00000583544.1_1_17:72700560-72709059:-|nuORF	ENST00000583544.1_1_17:72700560-72709059:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.20819091796875	2	500.224539	998.434526	-0.10322	-5.1635E-05	0.88291	0.00044165	0.77969	0.00039002	500.22621650056305	41.834	0.28811	41.711	41.565	41.853	-0.12299					11	7	2	0	0	0	0.027866	1	3706	3706		12.207	0	1	142840			35306	9507	24229	24280	40683	40683					-0.06475388615820066
KTDAKLSL	8	Unmodified	_KTDAKLSL_					0	0	0			REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3	REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.2633972167969	2	438.263468	874.512382	-0.26291	-0.00011522	0.67584	0.00029619	0.41293	0.00018097	438.2635997660627	40.938	1.3336	40.71	40.366	41.699	-0.2278					73	34	3	0	0	0	1.0284	1	3559	3559		32.812	4.5581	1	1881500	+		35307	28525	24230	24281	40684	40684					0.07010669040232642
KTDDLTMVLY	10	Unmodified	_KTDDLTMVLY_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.8048706054688	2	599.804839	1197.59513	0.25747	0.00015443	-0.23385	-0.00014027	0.023616	1.4165E-05	599.8045352499901	68.168	0.9758	67.913	67.497	68.472	-0.25516					59	23	4	0	0	0	0.463	2	7859	7859;7869		90.601	26.394	1	2784000			35308	10074	24231	24282	40685;40686	40685					0.004231979860833235
KTDDLTMVLY	10	Unmodified	_KTDDLTMVLY_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.8047485351562	2	599.804839	1197.59513	-0.14686	-8.8085E-05	0.32511	0.000195	0.17825	0.00010692	599.8048310105912	68.168	0.84285	67.934	67.636	68.479	-0.23375					52	20	4	0	0	0	0.5483	1	7865	7865		80.455	30.919	1	3348200			35309	10074	24231	24282	40687	40687					0.004231979860833235
KTDDLTMVLY	10	Unmodified	_KTDDLTMVLY_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.8043823242188	2	599.804839	1197.59513	0.13339	8.0005E-05	-0.23561	-0.00014132	-0.10222	-6.1314E-05	599.8046001928456	68.111	0.76006	67.873	67.589	68.349	-0.23814					64	18	5	0	0	0	0.3146	3	7849	7849;7860;7873		106.68	21.768	1	3222600			35310	10074	24231	24282	40688;40689;40690	40688					0.004231979860833235
KTDDLTMVLY	10	Oxidation (M)	_KTDDLTM(Oxidation (M))VLY_		KTDDLTM(1)VLY		KTDDLTM(69)VLY	0	0	1		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.8036499023438	2	607.802297	1213.59004	-1.0395	-0.00063179	0.17424	0.00010591	-0.86522	-0.00052588	607.8027226368506	61.091	0.7573	60.837	60.463	61.221	-0.25373					43	18	4	0	0	0	0.67616	1	6811	6811		68.846	16.547	1	1933800			35311	10074	24231	24283	40691	40691		421			-0.008211058765482449
KTDDLTMVLY	10	Oxidation (M)	_KTDDLTM(Oxidation (M))VLY_		KTDDLTM(1)VLY		KTDDLTM(65)VLY	0	0	1		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.3001098632812	2	607.802297	1213.59004	-0.23091	-0.00014035	-0.01864	-1.1329E-05	-0.24955	-0.00015168	608.3039081184758	62.981	1.5008	62.723	62.496	63.997	-0.25824					63	40	2	0	0	0	0.72729	1	7081	7081		65.465	16.024	1	691320			35312	10074	24231	24283	40692	40692		421			-0.008211058765482449
KTDGPSIHKY	10	Unmodified	_KTDGPSIHKY_					0	0	0			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.197021484375	2	573.301113	1144.58767	-0.14655	-8.4015E-05	-4.079	-0.0023385	-4.2255	-0.0024225	573.2989155982773	33.032	0.72854	32.801	32.544	33.273	-0.23107					35	17	4	0	0	0	0.03519	1	2314	2314		95.815	46.279	1	598390	+		35313	27392	24232	24284	40693	40693					0.021162265006751113
KTDGSFIGY	9	Unmodified	_KTDGSFIGY_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.2423400878906	2	494.242732	986.470912	-1.0255	-0.00050683	0.97167	0.00048024	-0.053789	-2.6585E-05	494.2430260873258	48.966	0.79632	48.865	48.581	49.377	-0.1008					53	20	4	0	0	0	0.12914	3	4901	4891;4901;4914		104.06	45.275	1	3388500			35314	3606	24233	24285	40694;40695;40696	40695					-0.022865117190917772
KTDGSFIGY	9	Unmodified	_KTDGSFIGY_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.24237060546875	2	494.242732	986.470912	-0.13615	-6.7289E-05	0.037398	1.8484E-05	-0.098748	-4.8806E-05	494.24255487673406	49.273	0.93902	48.993	48.682	49.621	-0.27977					61	24	4	0	0	0	0.28753	3	4944	4920;4930;4944		77.318	8.7966	1	3463200			35315	3606	24233	24285	40697;40698;40699	40699					-0.022865117190917772
KTDGSFIGY	9	Unmodified	_KTDGSFIGY_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.24163818359375	2	494.242732	986.470912	-0.13426	-6.6357E-05	0.012603	6.2288E-06	-0.12166	-6.0128E-05	494.24252785897994	49.125	0.78949	48.943	48.667	49.456	-0.18206					53	20	4	0	0	0	0.29158	2	4903	4903;4912		76.774	15.802	1	3321500			35316	3606	24233	24285	40700;40701	40700					-0.022865117190917772
KTDKEIIEVK	10	Unmodified	_KTDKEIIEVK_					0	0	0			REV__ENSG00000166881|ENST00000300128|NEMP1	REV__ENSG00000166881|ENST00000300128|NEMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.5719909667969	3	401.571211	1201.6918	0.49211	0.00019762	1.1685	0.00046925	1.6606	0.00066686	401.5715603293036	33.39	1.0448	33.159	32.67	33.714	-0.23107					80	25	5	0	0	0	1.0896	1	2365	2365		34.087	0.16487	1	1803600	+		35317	26070	24234	24286	40702	40702					0.09902508537516042
KTDKEVKW	8	Unmodified	_KTDKEVKW_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	517.287474	1032.5604	-0.048932	-2.5312E-05	3.0549	0.0015803	3.006	0.001555	517.2888954576619	24.848	0.86123	24.674	24.089	24.95	-0.17484					39	19	3	0	0	0	0.027866	1	1153	1153		102.77	9.5779	1	180350			35318	18506	24235	24287	40703	40703					0.04541742960304873
KTDKEVKW	8	Unmodified	_KTDKEVKW_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2568359375	2	517.287474	1032.5604	1.4255	0.00073739	1.4559	0.00075311	2.8814	0.0014905	517.2879221567716	24.971	0.47793	24.799	24.556	25.034	-0.17151					22	10	3	0	0	0	0.027866	1	1132	1132		96.19	11.275	1	195150			35319	18506	24235	24287	40704	40704					0.04541742960304873
KTDLDLQQY	9	Unmodified	_KTDLDLQQY_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2854614257812	2	562.285128	1122.5557	0.054297	3.053E-05	0.59778	0.00033612	0.65207	0.00036665	562.2854887720249	49.887	2.687	49.782	48.068	50.755	-0.10558					115	60	4	0	0	0	0.11727	3	5042	5042;5051;5065		106.68	21.522	1	4593400			35320	8157	24236	24288	40705;40706;40707	40705					-0.0006718597312556085
KTDLDLQQY	9	Unmodified	_KTDLDLQQY_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2847900390625	2	562.285128	1122.5557	0.042545	2.3922E-05	0.77361	0.00043499	0.81615	0.00045891	562.285794950032	50.177	2.9248	49.897	47.962	50.887	-0.27977					129	78	4	0	0	0	0.014478	3	5070	5070;5080;5093		164.46	52.044	1	4622800			35321	8157	24236	24288	40708;40709;40710	40708					-0.0006718597312556085
KTDLDLQQY	9	Unmodified	_KTDLDLQQY_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2855224609375	2	562.285128	1122.5557	0.19486	0.00010957	0.85618	0.00048142	1.051	0.00059099	562.2856326286014	50.015	2.4938	49.835	48.34	50.834	-0.18071					109	63	4	0	0	0	0.087669	3	5055	5047;5055;5067		114.89	24.118	1	4663900			35322	8157	24236	24288	40711;40712;40713	40712					-0.0006718597312556085
KTDLHNEGY	9	Unmodified	_KTDLHNEGY_					0	0	0		RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant;ENSG00000131378|ENST00000334133|RFTN1	RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant	RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7540283203125	2	538.753995	1075.49344	-0.91328	-0.00049203	0.31874	0.00017172	-0.59454	-0.00032031	538.7541371679962	25.682	0.80902	25.455	25.148	25.957	-0.22683					60	19	5	0	0	0	0.012962	4	1235	1226;1235;1246;1259		173.39	79.386	1	5283700			35323	4515	24237	24289	40714;40715;40716;40717	40715					-0.041289123214710344
KTDLHNEGY	9	Unmodified	_KTDLHNEGY_					0	0	0		RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant;ENSG00000131378|ENST00000334133|RFTN1	RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant	RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.75390625	2	538.753995	1075.49344	-0.5215	-0.00028096	-0.088188	-4.7512E-05	-0.60969	-0.00032847	538.75394850677	25.479	0.89886	25.309	24.997	25.896	-0.17078					58	22	5	0	0	0	0.013719	4	1203	1193;1203;1215;1230		168.26	91.412	1	4521700			35324	4515	24237	24289	40718;40719;40720;40721	40719					-0.041289123214710344
KTDLHNEGY	9	Unmodified	_KTDLHNEGY_					0	0	0		RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant;ENSG00000131378|ENST00000334133|RFTN1	RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant	RFTN1|p.I123M|1|0.41|ENSG00000131378|chr3:16409447-16409447|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7538452148438	2	538.753995	1075.49344	-0.69363	-0.0003737	0.15058	8.1127E-05	-0.54305	-0.00029257	538.7540473645589	25.437	0.80051	25.265	24.95	25.75	-0.17151					61	18	5	0	0	0	0.013719	4	1185	1162;1173;1185;1198		181.41	109.53	1	4672500			35325	4515	24237	24289	40722;40723;40724;40725	40724					-0.041289123214710344
KTDLKLSLL	9	Unmodified	_KTDLKLSLL_					0	0	0		ENSG00000156273|ENST00000286800|BACH1;BACH1-DSCR3|1|fusion	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2716064453125	2	515.828975	1029.6434	-0.19936	-0.00010284	0.12039	6.21E-05	-0.078976	-4.0738E-05	515.8286305242733	49.25	0.55863	48.97	48.682	49.24	-0.27977					22	14	2	0	0	0	0.024409	1	4927	4927		49.536	1.6204	1	1268700			35326	174	24238	24290	40726	40726					0.1297605968827611
KTDPENTDY	9	Unmodified	_KTDPENTDY_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.7348022460938	2	541.735468	1081.45638	-0.6019	-0.00032607	0.5012	0.00027152	-0.10069	-5.4549E-05	541.7356007007828	27.459	0.68464	27.216	26.954	27.638	-0.24217					36	15	3	0	0	0	0.027736	1	1532	1532		143.37	63.434	1	900110			35327	2651	24239	24291	40727	40727					-0.08108628657873851
KTDPENTDY	9	Unmodified	_KTDPENTDY_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.7354736328125	2	541.735468	1081.45638	-0.81175	-0.00043975	0.6096	0.00033024	-0.20215	-0.00010951	541.7356661163218	27.286	0.59357	27.117	26.809	27.402	-0.16816					36	13	4	0	0	0	0.11727	1	1501	1501		106.68	26.744	1	826470			35328	2651	24239	24291	40728	40728					-0.08108628657873851
KTDPGCKER	9	Unmodified	_KTDPGCKER_					0	0	0		GIMAP1|p.E99K|1|0.31|ENSG00000213203|chr7:150720299-150720299|G/A|missense_variant	GIMAP1|p.E99K|1|0.31|ENSG00000213203|chr7:150720299-150720299|G/A|missense_variant	GIMAP1|p.E99K|1|0.31|ENSG00000213203|chr7:150720299-150720299|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2570190429688	2	517.258391	1032.50223	-0.71554	-0.00037012	-2.4769	-0.0012812	-3.1924	-0.0016513	517.2571261216964	25.357	0.92951	25.13	24.842	25.771	-0.22683					45	21	3	0	0	0	0.094442	2	1201	1201;1213		112.41	16.231	1	2903000			35329	17678	24240	24292	40729;40730	40729					-0.012722619566375215
KTDPGCKER	9	Unmodified	_KTDPGCKER_					0	0	0		GIMAP1|p.E99K|1|0.31|ENSG00000213203|chr7:150720299-150720299|G/A|missense_variant	GIMAP1|p.E99K|1|0.31|ENSG00000213203|chr7:150720299-150720299|G/A|missense_variant	GIMAP1|p.E99K|1|0.31|ENSG00000213203|chr7:150720299-150720299|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2572631835938	2	517.258391	1032.50223	-0.064985	-3.3614E-05	-3.1421	-0.0016253	-3.2071	-0.0016589	517.2567392598296	25.188	0.97452	25.017	24.647	25.621	-0.17078					54	22	4	0	0	0	0.1158	1	1174	1174		107.01	10.817	1	2278200			35330	17678	24240	24292	40731	40731					-0.012722619566375215
KTDRLLTQML	10	Unmodified	_KTDRLLTQML_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	609.8453979492188	2	609.847373	1217.68019	-0.49182	-0.00029993	-2.367	-0.0014435	-2.8588	-0.0017434	609.8458377013973	60.048	1.0792	59.848	59.577	60.657	-0.20016					77	28	4	0	0	0	0.98527	1	6884	6884		47.96	5.0953	1	4685200			35331	4616	24241	24293	40732	40732					0.0800598824255303
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.2913208007812	2	605.290942	1208.56733	-0.989	-0.00059863	0.69726	0.00042204	-0.29174	-0.00017659	605.2913097004182	27.915	1.118	27.669	27.203	28.322	-0.24524					83	26	5	0	0	0	0.00033629	4	1589	1568;1577;1589;1603		159.28	68.906	1	4610900			35332	2721;10506;3600;10014	24242	24294	40733;40734;40735;40736	40735					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.2908935546875	2	605.290942	1208.56733	-1.1831	-0.00071612	0.99765	0.00060387	-0.18544	-0.00011225	605.2914752408217	27.759	1.3685	27.591	27.142	28.511	-0.16816					84	32	5	0	0	0	8.523E-06	4	1543	1543;1551;1564;1577		172.25	81.879	1	4321900			35333	2721;10506;3600;10014	24242	24294	40737;40738;40739;40740	40737					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.2911376953125	2	605.290942	1208.56733	-0.47232	-0.00028589	0.087327	5.2858E-05	-0.38499	-0.00023303	605.2909226068456	27.815	0.97104	27.662	27.311	28.282	-0.15272					70	23	5	0	0	0	0.00042955	4	1539	1527;1539;1553;1567		155.58	77.321	1	4895300			35334	2721;10506;3600;10014	24242	24294	40741;40742;40743;40744	40742					-0.028609889497602126
KTDSTGTHSLY	11	Unmodified	_KTDSTGTHSLY_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3;ENSG00000213445|ENST00000534313|SIPA1;ENSG00000116991|ENST00000674635|SIPA1L2;nc|ENSG00000197555|O43166-3|SIPA1L1	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.863037109375	3	403.863053	1208.56733	-0.48355	-0.00019529	0.99361	0.00040128	0.51006	0.000206	403.86326090348723	27.808	1.0126	27.655	27.107	28.119	-0.15352					78	24	5	0	0	0	0.90725	1	1541	1541		44.639	0	1	3538900			35335	2721;10506;3600;10014	24242	24294	40745	40745					-0.028609889497602126
KTDSYNKEY	9	Unmodified	_KTDSYNKEY_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.2662353515625	2	574.266936	1146.51932	-0.15167	-8.7098E-05	1.0769	0.00061846	0.92528	0.00053136	574.2676678651553	99.916	2.0221	99.745	97.899	99.921	-0.17088					102	50	3	0	0	0	0.82115	1	12283	12283		37.812	0	1	216300			35336	6965	24243	24295	40746	40746					-0.04808062869847163
KTDVKMMLSRA	11	Unmodified	_KTDVKMMLSRA_					0	0	0		ENST00000481482.5_1_7:138818528-138853308:+|nuORF;ENST00000479132.5_1_7:138818552-138822627:+|nuORF	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.345947265625	2	640.346683	1278.67881	1.0477	0.00067089	-2.9931	-0.0019167	-1.9455	-0.0012458	640.344804406662	105.27	0.62677	105.27	105.06	105.69	0					28	15	3	0	0	0	0.9728	1	13510	13510		42.864	0.46813	1	332270			35337	15230	24244	24296	40747	40747					0.05062030882140789
KTDWFQEW	8	Unmodified	_KTDWFQEW_					0	0	0		GCM1|p.F143Lfs*19|1|0.23|ENSG00000137270|chr6:53132019-53132019|A/-|frameshift_variant;ENSG00000137270|ENST00000259803|GCM1	GCM1|p.F143Lfs*19|1|0.23|ENSG00000137270|chr6:53132019-53132019|A/-|frameshift_variant	GCM1|p.F143Lfs*19|1|0.23|ENSG00000137270|chr6:53132019-53132019|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.738525390625	2	570.261456	1138.50836	-0.37458	-0.00021361	-3.4586	-0.0019723	-3.8332	-0.0021859	570.2594887958458	57.094	0.76922	56.927	56.637	57.406	-0.1672					26	20	2	0	0	0	0.027866	1	6257	6257		12.207	0	1	232160			35338	5109	24245	24297	40748	40748					-0.055354204534978635
KTDWFQEW	8	Unmodified	_KTDWFQEW_					0	0	0		GCM1|p.F143Lfs*19|1|0.23|ENSG00000137270|chr6:53132019-53132019|A/-|frameshift_variant;ENSG00000137270|ENST00000259803|GCM1	GCM1|p.F143Lfs*19|1|0.23|ENSG00000137270|chr6:53132019-53132019|A/-|frameshift_variant	GCM1|p.F143Lfs*19|1|0.23|ENSG00000137270|chr6:53132019-53132019|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	570.261456	1138.50836	0.38629	0.00022028	-3.7401	-0.0021329	-3.3539	-0.0019126	570.2593193331347	57.09	0.39035	56.888	56.71	57.1	-0.20209	-0.0194	-5.4432E-05	NaN	7.1934	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274260			35339	5109	24245	24297							-0.055354204534978635
KTEADNFF	8	Unmodified	_KTEADNFF_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7948303222656	2	486.227082	970.439611	1.6773	0.00081556	1.151	0.00055965	2.8283	0.0013752	486.2273382253515	36.771	0.44472	36.562	36.24	36.685	-0.2092					18	10	2	0	0	0	0.027866	1	2880	2880		37.159	0	1	108170	+		35340	27450	24246	24298	40749	40749					-0.04679084753183815
KTEADVPK	8	Unmodified	_KTEADVPK_					0	0	0		ENSG00000204296|ENST00000533191|TSBP1;nc|ENSG00000204296|Q5SRN2-2|TSBP1;nc|ENSG00000204296|Q5SRN2|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.7612609863281	2	444.245275	886.475997	-0.32708	-0.0001453	0.43308	0.00019239	0.10601	4.7093E-05	444.24504097349234	23.53	0.62739	23.35	23.067	23.694	-0.17989					27	14	3	0	0	0	0.027866	1	981	981		17.365	0	1	178980			35341	10325	24247	24299	40750	40750					0.02821792143527091
KTEAGIKEL	9	Unmodified	_KTEAGIKEL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.78692626953125	2	494.787307	987.560061	0.38939	0.00019266	-2.3259	-0.0011508	-1.9365	-0.00095817	494.78527947553744	32.667	0.95605	32.475	32.029	32.985	-0.19261					52	22	4	0	0	0	0.26413	1	2257	2257		80.455	0.74203	1	2605500			35342	2876	24248	24300	40751	40751					0.06578323240421469
KTEAGIKEL	9	Unmodified	_KTEAGIKEL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	OPSCC_40_ClassI_Rep-3	6	494.78643798828125	2	494.787307	987.560061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.575	1	32.418	31.918	32.918	-0.15772								0	0	0	0.26342	1	2239	2239		70.816	4.3869	1				35343	2876	24248	24300	40752	40752					0.06578323240421469
KTEAQNLKV	9	Unmodified	_KTEAQNLKV_					0	0	0		TSGA10IP|p.A171V|1|0.26|ENSG00000175513|chr11:65947337-65947337|C/T|missense_variant	TSGA10IP|p.A171V|1|0.26|ENSG00000175513|chr11:65947337-65947337|C/T|missense_variant	TSGA10IP|p.A171V|1|0.26|ENSG00000175513|chr11:65947337-65947337|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.77392578125	2	515.798206	1029.58186	-0.57446	-0.0002963	2.053	0.001059	1.4786	0.00076265	515.7980865575321	66.826	1.0164	66.826	66.434	67.45	0					38	25	3	0	0	0	0.0242	1	7933	7933		79.713	2.9384	1	571970			35344	38112	24249	24301	40753	40753					0.06825127989009161
KTEEEKSLT	9	Unmodified	_KTEEEKSLT_					0	0	0			REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF	REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8025512695312	2	532.777136	1063.53972	-0.48535	-0.00025858	-1.5093	-0.00080414	-1.9947	-0.0010627	532.7757072022252	79.445	0.5354	79.463	79.233	79.768	0.018677					21	12	2	0	0	0	0.024405	1	9764	9764		44.117	12.587	1	123800	+		35345	21721	24250	24302	40754	40754					0.010491077899587253
KTEIYLTIL	9	Unmodified	_KTEIYLTIL_					0	0	0			REV__nc|ENSG00000128656|P15882-3|CHN1	REV__nc|ENSG00000128656|P15882-3|CHN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3282470703125	2	547.328808	1092.64306	-0.17293	-9.4651E-05	-2.7915	-0.0015279	-2.9644	-0.0016225	547.3271763228121	57.592	0.91434	57.417	56.769	57.684	-0.1749					71	24	4	0	0	0	0.6504	1	6440	6440		49.442	0	1	4166200	+		35346	23005	24251	24303	40755	40755					0.10044639968418778
KTEKDALLE	9	Unmodified	_KTEKDALLE_					0	0	0		nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31;ENST00000476399.5_1_7:23776595-23810746:+|nuORF	nc|ENSG00000196335|Q9BXU1-3|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8024291992188	2	523.790047	1045.56554	0.99115	0.00051916	1.3227	0.00069279	2.3138	0.0012119	523.7919104406984	96.948	0.44205	96.948	96.705	97.147	-3.0518E-05					12	9	2	0	0	0	0.023837	1	12310	12310		74.255	16.025	1	45193			35347	9850	24252	24304	40756	40756					0.04458002032242803
KTEKRLTI	8	Unmodified	_KTEKRLTI_					0	0	0		ENST00000452380.6_1_10:17194042-17210877:-|nuORF	ENST00000452380.6_1_10:17194042-17210877:-|nuORF	ENST00000452380.6_1_10:17194042-17210877:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7862243652344	2	494.811116	987.60768	-0.36012	-0.00017819	-1.677	-0.00082982	-2.0372	-0.001008	494.8101901575275	32.528	0.41091	32.291	32.086	32.497	-0.23667					13	9	2	0	0	0	0.027866	1	2262	2262		32.812	1.2826	1	90144			35348	14534	24253	24305	40757	40757					0.11338022231268496
KTELRLSP	8	Unmodified	_KTELRLSP_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7618408203125	2	472.282192	942.549831	-0.22147	-0.0001046	0.18601	8.7848E-05	-0.035462	-1.6748E-05	472.2820768106427	32.929	0.7701	32.935	32.518	33.288	0.0066261					46	20	4	0	0	0	0.027866	1	2264	2264		32.812	0	1	966170			35349	1916	24254	24306	40758	40758					0.0762576030585933
KTEPDRKL	8	Unmodified	_KTEPDRKL_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7861022949219	2	493.785099	985.555644	0.89769	0.00044327	2.7317	0.0013489	3.6294	0.0017921	493.78629917175635	51.614	0.7499	51.43	51.14	51.889	-0.18404					45	19	3	0	0	0	0.56592	1	5323	5323		79.451	9.8234	1	2793800	+		35350	19690	24255	24307	40759	40759					0.06228858817530636
KTEPDRKL	8	Unmodified	_KTEPDRKL_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.785099	985.555644	0.19199	9.4801E-05	3.7039	0.0018289	3.8958	0.0019237	493.7867526010572	51.569	0.55574	51.45	51.202	51.758	-0.11875	-0.035806	-0.00024041	NaN	79.451	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1414300	+		35351	19690	24255	24307							0.06228858817530636
KTEPDRKL	8	Unmodified	_KTEPDRKL_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.785099	985.555644	-1.594	-0.00078707	5.3051	0.0026196	3.7111	0.0018325	493.78757269378946	51.846	0.69712	51.577	51.321	52.018	-0.26903	0.091345	0.0013409	NaN	79.451	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2180000	+		35352	19690	24255	24307							0.06228858817530636
KTEPDRKL	8	Unmodified	_KTEPDRKL_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	493.785099	985.555644	0.89769	0.00044327	2.7317	0.0013489	3.6294	0.0017921	493.78629917175635	51.614	0.7499	51.43	51.14	51.889	-0.18404	-0.055539	-0.0012005	NaN	79.451	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2793800	+		35353	19690	24255	24307							0.06228858817530636
KTEPLLFVI	9	Unmodified	_KTEPLLFVI_					0	0	0			REV__ENSG00000184999|ENST00000332793|SLC22A10	REV__ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.3229370117188	2	530.326068	1058.63758	-0.16532	-8.7673E-05	-3.8159	-0.0020236	-3.9812	-0.0021113	530.3238764022794	36.692	0.59647	36.486	36.242	36.839	-0.20518					43	14	5	0	0	0	0.39228	1	2886	2886		66.429	8.1994	1	1434900	+		35354	27720	24256	24308	40760	40760					0.11060961176622186
KTEPVDFLDPF	11	Unmodified	_KTEPVDFLDPF_					0	0	0		nc|ENSG00000181690|Q6DJT9-2|PLAG1;ENSG00000181690|ENST00000316981|PLAG1	nc|ENSG00000181690|Q6DJT9-2|PLAG1	nc|ENSG00000181690|Q6DJT9-2|PLAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7404479980469	3	436.555449	1306.64452	-0.36911	-0.00016114	-0.68272	-0.00029804	-1.0518	-0.00045918	436.5551916496907	45.445	0.44103	45.296	44.974	45.415	-0.1488					18	12	2	0	0	0	0.024757	1	4361	4361		20.315	3.1483	1	76033			35355	9060	24257	24309	40761	40761					0.003462292665062705
KTEQIRLLS	9	Unmodified	_KTEQIRLLS_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.782470703125	2	544.327131	1086.63971	-2.2497	-0.0012246	1.8602	0.0010126	-0.38949	-0.00021201	544.3280845357076	38.509	0.73417	38.536	38.298	39.032	0.027279					53	19	4	0	0	0	0.024344	1	3232	3232		30.318	0	1	1410600			35356	1881	24258	24310	40762	40762					0.09985389914413645
KTERRRNK	8	Unmodified	_KTERRRNK_					0	0	0			REV__ENST00000554208.1_1_14:67708244-67736501:+|nuORF	REV__ENST00000554208.1_1_14:67708244-67736501:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7824096679688	2	544.325788	1086.63702	-1.5421	-0.00083942	3.4664	0.0018869	1.9243	0.0010474	544.3276264943586	38.377	0.59859	38.377	38.199	38.797	0					38	15	4	0	0	0	0.027866	1	3266	3266		45.952	15.448	1	2077400	+		35357	29630	24259	24311	40763	40763					0.09716979300128514
KTESEILTL	9	Unmodified	_KTESEILTL_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|29|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|29|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|29|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7815551757812	2	517.292422	1032.57029	-0.16172	-8.3659E-05	1.0948	0.00056631	0.93303	0.00048265	517.2928795937862	41.139	1.0252	41.139	40.8	41.825	0					83	28	4	0	0	0	0.024427	1	3790	3790		26.693	0	1	3955000			35358	17831	24260	24312	40764	40764					0.05530886175006344
KTESEILTL	9	Unmodified	_KTESEILTL_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|29|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|29|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|29|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7813110351562	2	517.292422	1032.57029	-0.050672	-2.6212E-05	0.76613	0.00039631	0.71546	0.0003701	517.292319826174	42.182	0.49659	42.182	41.825	42.322	0					19	14	3	0	0	0	0.024447	1	3838	3838		32.812	6.1195	1	145810			35359	17831	24260	24312	40765	40765					0.05530886175006344
KTETITTEK	9	Unmodified	_KTETITTEK_					0	0	0		EVI2B|p.A98Dfs*16|1|0.04|ENSG00000185862|chr17:31305317-31305318|-/AT|frameshift_variant;ENSG00000185862|ENST00000330927|EVI2B;nc|ENSG00000185862|P34910-2|EVI2B	EVI2B|p.A98Dfs*16|1|0.04|ENSG00000185862|chr17:31305317-31305318|-/AT|frameshift_variant	EVI2B|p.A98Dfs*16|1|0.04|ENSG00000185862|chr17:31305317-31305318|-/AT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7877807617188	2	525.787504	1049.56045	-0.12564	-6.606E-05	0.84168	0.00044254	0.71604	0.00037649	525.7878945665924	29.481	1.2194	29.332	29	30.219	-0.14952					55	28	3	0	0	0	0.12914	1	1777	1777		104.06	10.05	1	2804800			35360	9483	24261	24313	40766	40766					0.03765698169604548
KTETLQNAHSM	11	Unmodified	_KTETLQNAHSM_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.5475769042969	3	420.539805	1258.59759	3.228	0.0013575	0.49656	0.00020882	3.7245	0.0015663	420.5399633914312	18.541	0.59866	18.299	18.074	18.673	-0.24256					32	11	4	0	0	0	1.0123	1	294	294		34.087	4.9164	1	337030			35361	2192	24262	24314	40767	40767					-0.02136953556282606
KTEVNSGFFY	10	Unmodified	_KTEVNSGFFY_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000146731|P40227-2|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	ENSG00000132141|ENST00000314144|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.2877807617188	2	596.287671	1190.56079	-0.61803	-0.00036852	0.56952	0.0003396	-0.048506	-2.8924E-05	596.287909898755	56.639	1.0192	56.472	56.124	57.143	-0.1672					70	26	4	0	0	0	0.082298	1	6150	6150		140.11	5.3466	1	3594600			35362	4575	24263	24315	40768	40768					-0.026868821105153984
KTFALCELD	9	Unmodified	_KTFALCELD_					0	0	0			REV__ENSG00000147874|ENST00000380502|HAUS6	REV__ENSG00000147874|ENST00000380502|HAUS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2791137695312	2	520.260068	1038.50558	-0.64266	-0.00033435	-3.2687	-0.0017006	-3.9114	-0.0020349	520.2585670567181	62.214	0.31626	61.987	61.803	62.119	-0.22663					13	8	2	0	0	0	0.024418	1	7176	7176		45.972	3.5761	1	200400	+		35363	24586	24264	24316	40769	40769					-0.012130119026551256
KTFALCELD	9	Unmodified	_KTFALCELD_					0	0	0			REV__ENSG00000147874|ENST00000380502|HAUS6	REV__ENSG00000147874|ENST00000380502|HAUS6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.260068	1038.50558	-0.60842	-0.00031654	-0.47546	-0.00024736	-1.0839	-0.0005639	520.2597134470103	62.327	0.34254	62.149	61.923	62.265	-0.17782	0.1112	0.0021837	NaN	45.972	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143510	+		35364	24586	24264	24316							-0.012130119026551256
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.7925415039062	2	557.792589	1113.57063	-0.9649	-0.00053821	0.17019	9.4928E-05	-0.79472	-0.00044329	557.7926072976317	44.751	0.93495	44.652	44.354	45.289	-0.099445					67	24	4	0	0	0	0.012922	4	4219	4180;4192;4206;4219		177.3	90.008	1	9082900			35365	3009	24265	24317	40770;40771;40772;40773	40773					0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.7916870117188	2	557.792589	1113.57063	-0.57279	-0.0003195	-0.40856	-0.00022789	-0.98134	-0.00054739	557.792187088724	44.945	1.1855	44.693	44.037	45.223	-0.25252					78	31	5	0	0	0	0.013442	4	4209	4197;4209;4222;4234		180.87	101.16	1	8289900			35366	3009	24265	24317	40774;40775;40776;40777	40775					0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.7918701171875	2	557.792589	1113.57063	-0.81559	-0.00045493	0.0092155	5.1403E-06	-0.80637	-0.00044979	557.792498706937	44.924	0.84763	44.712	44.436	45.284	-0.21109					62	22	5	0	0	0	0.014475	4	4209	4197;4209;4223;4236		185.72	103.48	1	7257500			35367	3009	24265	24317	40778;40779;40780;40781	40779					0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.792589	1113.57063	-0.85566	-0.00047728	7.2144	0.0040242	6.3588	0.0035469	557.796240867249	44.482	0.37577	44.482	44.281	44.657	0	-0.10085	0.0076174	NaN	177.3	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143190			35368	3009	24265	24317							0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.792589	1113.57063	-1.4582	-0.00081338	7.5541	0.0042136	6.0958	0.0034002	557.7966033074814	44.598	0.44125	44.449	44.256	44.697	-0.1488	-0.13379	0.0079963	NaN	177.3	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126320			35369	3009	24265	24317							0.018383058948302278
KTFEDKVTF	9	Unmodified	_KTFEDKVTF_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.792589	1113.57063	-0.15004	-8.3692E-05	6.4225	0.0035824	6.2724	0.0034987	558.2979395401609	44.471	0.37488	44.508	44.34	44.715	0.0369	-0.074296	0.0067339	NaN	177.3	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128220			35370	3009	24265	24317							0.018383058948302278
KTFEDRMDL	9	Unmodified	_KTFEDRMDL_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.306396484375	2	577.779156	1153.54376	-0.20055	-0.00011587	-2.3019	-0.00133	-2.5024	-0.0014458	577.7777514154966	71.225	0.52877	71.235	71.05	71.579	0.010735					28	13	3	0	0	0	0.02438	1	8573	8573		46.457	0.50483	1	358900			35371	8599	24266	24318	40782	40782					-0.026871259879726495
KTFFFGAR	8	Unmodified	_KTFFFGAR_					0	0	0			REV__ENSG00000132554|ENST00000360863|RGS22	REV__ENSG00000132554|ENST00000360863|RGS22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2914123535156	2	487.266345	972.518136	0.39399	0.00019198	-3.7767	-0.0018402	-3.3827	-0.0016483	487.26349429641044	82.591	0.21809	82.371	82.26	82.478	-0.22015					7	4	2	0	0	0	0.027866	1	9941	9941		16.473	0	1	27553	+		35372	23291	24267	24319	40783	40783					0.03077812342564812
KTFGAPRPYS	10	Unmodified	_KTFGAPRPYS_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;ENST00000493713.1_1_2:165549153-165551207:-|nuORF	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2975463867188	2	562.298373	1122.58219	-0.083086	-4.6719E-05	-0.18304	-0.00010292	-0.26612	-0.00014964	562.2983776953828	58.433	0.89348	58.255	57.974	58.868	-0.17775					34	21	3	0	0	0	0.64538	1	6416	6416		71.877	3.0906	1	2559700			35373	18094	24268	24320	40784	40784					0.025805477088624684
KTFIELGLP	9	Unmodified	_KTFIELGLP_					0	0	0		nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B;FAM135B|p.G1169E|1|0.06|ENSG00000147724|chr8:138145993-138145993|C/T|missense_variant;nc|ENSG00000147724|Q49AJ0-4|FAM135B	nc|ENSG00000147724|Q49AJ0-2|FAM135B	nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7686462402344	2	509.302593	1016.59063	-0.19816	-0.00010092	-2.899	-0.0014765	-3.0971	-0.0015774	509.3002777295373	41.901	0.61404	41.926	41.708	42.322	0.024487					37	17	3	0	0	0	0.024427	1	3774	3774		42.396	3.59	1	580840			35374	5992	24269	24321	40785	40785					0.08300101625468415
KTFILKTF	8	Unmodified	_KTFILKTF_					0	0	0		ENSG00000131748|ENST00000336308|STARD3;nc|ENSG00000131748|Q14849-2|STARD3;nc|ENSG00000131748|Q14849-3|STARD3;ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENSG00000131748|ENST00000336308|STARD3;ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENSG00000131748|ENST00000336308|STARD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.766357421875	2	499.307678	996.600803	-0.3517	-0.00017561	1.6197	0.0008087	1.268	0.0006331	499.3105072557347	41.6	0.39108	41.372	41.159	41.55	-0.2278					15	9	2	0	0	0	0.027866	1	3682	3682		29.15	4.9468	1	96730			35375	4547;15395	24270	24322	40786	40786					0.10236709350704132
KTFIMQNW	8	Unmodified	_KTFIMQNW_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2697143554688	2	534.27077	1066.52699	-0.3619	-0.00019335	0.38347	0.00020487	0.021566	1.1522E-05	534.2707868795944	61.902	0.71359	61.688	61.416	62.13	-0.21375					43	17	3	0	0	0	0.11183	2	6933	6933;6945		157.33	64.134	1	1599400			35376	3981	24271	24323	40787;40788	40787					-0.0036158208329197805
KTFIMQNW	8	Unmodified	_KTFIMQNW_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2699584960938	2	534.27077	1066.52699	-1.2556	-0.00067085	1.4089	0.00075272	0.15324	8.1871E-05	534.2713813832844	61.752	0.7582	61.574	61.245	62.003	-0.17781					42	18	3	0	0	0	0.25561	2	6925	6925;6938		131.03	51.092	1	1353500			35377	3981	24271	24323	40789;40790	40789					-0.0036158208329197805
KTFIMQNW	8	Unmodified	_KTFIMQNW_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2703857421875	2	534.27077	1066.52699	-0.46785	-0.00024996	0.2378	0.00012705	-0.23006	-0.00012291	534.270879720374	61.967	0.75291	61.71	61.383	62.136	-0.25725					48	18	5	0	0	0	0.17959	2	6944	6933;6944		143.89	53.11	1	1360600			35378	3981	24271	24323	40791;40792	40792					-0.0036158208329197805
KTFKDVGNLL	10	Unmodified	_KTFKDVGNLL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8292846679688	2	567.829506	1133.64446	-1.8154	-0.0010308	1.5468	0.00087835	-0.26851	-0.00015247	567.830163950147	52.214	1.0715	51.945	51.361	52.432	-0.26903					66	28	4	0	0	0	0.22838	1	5401	5401		117.53	32.365	1	2200800			35379	3327	24272	24324	40793	40793					0.08298274057187882
KTFKDVGNLL	10	Unmodified	_KTFKDVGNLL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.8291625976562	2	567.829506	1133.64446	0.1952	0.00011084	-0.89158	-0.00050627	-0.69639	-0.00039543	567.8290073844983	52.023	0.67512	51.839	51.598	52.273	-0.18404					58	17	4	0	0	0	0.20616	2	5376	5364;5376		120.31	35.39	1	2283600			35380	3327	24272	24324	40794;40795	40795					0.08298274057187882
KTFKDVGNLL	10	Unmodified	_KTFKDVGNLL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;SMC4|p.K608Nfs*15|1|0.26|ENSG00000113810|chr3:160419503-160419503|A/-|frameshift_variant	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.829506	1133.64446	-0.1785	-0.00010136	-0.31164	-0.00017696	-0.49014	-0.00027831	567.8292803235978	51.929	0.70623	51.81	51.575	52.282	-0.11875	-0.054463	-0.00037793	NaN	120.31	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2411100			35381	3327	24272	24324							0.08298274057187882
KTFKQRRTF	9	Unmodified	_KTFKQRRTF_					0	0	0		ENST00000564638.1_1_16:87426033-87432506:+|nuORF;ENSG00000258102|ENST00000556529|MAP1LC3B2;ENSG00000140941|ENST00000268607|MAP1LC3B	ENST00000564638.1_1_16:87426033-87432506:+|nuORF	ENST00000564638.1_1_16:87426033-87432506:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.5721435546875	3	404.571768	1210.69348	-1.0717	-0.00043359	1.3278	0.0005372	0.25609	0.00010361	404.5722950181773	20.978	1.4662	20.765	20.425	21.892	-0.2128					65	29	4	0	0	0	0.82115	1	586	586		37.812	1.2836	1	814920			35382	5452	24273	24325	40796	40796					0.09655607136778599
KTFKRLST	8	Unmodified	_KTFKRLST_					0	0	0		ENSG00000167232|ENST00000300619|ZNF91;nc|ENSG00000167232|Q05481-2|ZNF91	ENSG00000167232|ENST00000300619|ZNF91	ENSG00000167232|ENST00000300619|ZNF91	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.57958984375	2	490.798009	979.581465	1.0073	0.00049439	-1.1434	-0.00056116	-0.13604	-6.677E-05	490.79728487650436	19.725	0.64475	19.525	19.156	19.801	-0.2001					30	12	4	0	0	0	0.027866	1	429	429		37.159	14.117	1	350130			35383	7663	24274	24326	40797	40797					0.09085753059787294
KTFLDNLVN	9	Unmodified	_KTFLDNLVN_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8173217773438	2	532.292756	1062.57096	0.39376	0.00020959	-1.963	-0.0010449	-1.5692	-0.00083528	532.2926260091145	88.138	0.36823	88.156	87.87	88.238	0.018555					10	8	2	0	0	0	0.024025	1	11023	11023		52.937	0	1	54399			35384	4997	24275	24327	40798	40798					0.04217725614716983
KTFLFMIV	8	Unmodified	_KTFLFMIV_					0	0	0		L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense	L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense	L1ME1_dup20736|chr11:12960571-12960957:-|1.2922583834140076|0.1660924615407864|2.96|507.0|13|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.77032470703125	2	499.790807	997.56706	0.63009	0.00031491	3.9835	0.0019909	4.6136	0.0023058	499.79259461612503	65.621	0.41129	65.621	65.426	65.837	0					23	10	3	0	0	0	0.027866	1	7760	7760		40.573	0	1	518680			35385	17822	24276	24328	40799	40799					0.06817964587298775
KTFLRKQF	8	Unmodified	_KTFLRKQF_					0	0	0			REV__EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	REV__EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7855224609375	2	534.321651	1066.62875	-0.63689	-0.0003403	-3.5836	-0.0019148	-4.2205	-0.0022551	534.3196773109314	23.745	0.5566	23.565	23.356	23.913	-0.17989					27	12	4	0	0	0	0.027866	1	994	994		65.803	7.9919	1	148720	+		35386	24172	24277	24329	40800	40800					0.09810032330778995
KTFPHPID	8	Unmodified	_KTFPHPID_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7607116699219	2	477.75581	953.497067	2.0457	0.00097733	3.7682	0.0018003	5.8139	0.0027776	477.75736102982455	19.172	0.44452	19.172	18.774	19.218	0					11	8	2	0	0	0	0.027866	1	354	354		71.296	34.137	1	25121			35387	2208	24278	24330	40801	40801					0.01845802243030903
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.8810119628906	3	413.88049	1238.61964	-1.1197	-0.00046344	1.4119	0.00058434	0.29212	0.0001209	413.88102645891894	29.233	1.2019	28.987	28.534	29.736	-0.24524					72	27	4	0	0	0	0.11727	2	1780	1780;1795		106.68	10.073	1	2871300			35388	4127	24279	24331	40802;40803	40802					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.5675048828125	3	413.88049	1238.61964	-0.52799	-0.00021852	0.87816	0.00036346	0.35018	0.00014493	413.8807930443195	29.116	1.2394	28.944	28.463	29.703	-0.17258					71	28	5	0	0	0	0.023819	1	1738	1738		65.157	2.9911	1	2823200			35389	4127	24279	24331	40804	40804					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.88116455078125	3	413.88049	1238.61964	-0.14975	-6.198E-05	0.35025	0.00014496	0.2005	8.2982E-05	413.88059887469956	28.974	1.4385	28.825	28.529	29.967	-0.14952					77	33	4	0	0	0	0.16539	2	1726	1726;1738		96.034	13.203	1	2681700			35390	4127	24279	24331	40805;40806	40805					0.00987638974447691
KTFRIKRFL	9	Unmodified	_KTFRIKRFL_					0	0	0		ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5925598144531	3	403.592392	1207.75535	-0.0046254	-1.8668E-06	-0.070544	-2.8471E-05	-0.075169	-3.0338E-05	403.5923711949745	38.108	1.3027	37.929	37.443	38.746	-0.17929					97	31	5	0	0	0	0.98462	1	3145	3145		23.523	0	1	10622000			35391	10250	24280	24332	40807	40807					0.1597795855593631
KTFRIKRFL	9	Unmodified	_KTFRIKRFL_					0	0	0		ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.5924987792969	3	403.592392	1207.75535	-0.88882	-0.00035872	0.80683	0.00032563	-0.081998	-3.3094E-05	403.5927029558101	38.166	1.569	37.947	37.571	39.14	-0.21848					120	43	4	0	0	0	0.86013	3	3121	3085;3095;3121		35.152	10.92	1	8086400			35392	10250	24280	24332	40808;40809;40810	40810					0.1597795855593631
KTFRKLRLF	9	Unmodified	_KTFRKLRLF_					0	0	0		WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;ENSG00000166483|ENST00000450114|WEE1	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5927429199219	3	403.592392	1207.75535	-0.0046254	-1.8668E-06	-0.070544	-2.8471E-05	-0.075169	-3.0338E-05	403.5923711949745	38.108	1.3027	37.929	37.443	38.746	-0.17929					97	31	5	0	0	0	0.98462	1	3132	3132		23.523	0	1	10622000			35393	38154	24281	24333	40811	40811					0.15977958555913574
KTFRKLRLF	9	Unmodified	_KTFRKLRLF_					0	0	0		WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;ENSG00000166483|ENST00000450114|WEE1	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.59246826171875	3	403.592392	1207.75535	-0.88882	-0.00035872	0.80683	0.00032563	-0.081998	-3.3094E-05	403.5927029558101	38.166	1.569	37.947	37.571	39.14	-0.21848					120	43	4	0	0	0	0.86013	1	3107	3107		35.152	2.4015	1	8086400			35394	38154	24281	24333	40812	40812					0.15977958555913574
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7820434570312	2	534.782222	1067.54989	-0.58719	-0.00031402	0.42442	0.00022697	-0.16277	-8.7045E-05	534.7823474902473	41.041	1.0617	40.905	40.381	41.443	-0.13554					68	27	4	0	0	0	0.012922	3	3613	3590;3600;3613		223.88	94.457	1	3657100		+	35395	17687;2646	24282	24334	40813;40814;40815	40815					0.01881715515196447
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MSMS	OPSCC_40_ClassI_Rep-2	5	534.7819213867188	2	534.782222	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.167	1	40.939	40.439	41.439	-0.2278								0	0	0	7.9924E-06	1	3607	3607		209.19	91.384	1			+	35396	17687;2646	24282	24334	40816	40816					0.01881715515196447
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MSMS	OPSCC_40_ClassI_Rep-2	5	534.7820434570312	2	534.782222	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.233	1	41.005	40.505	41.505	-0.2278								0	0	0	0.00013809	1	3617	3617		199.89	79.023	1			+	35397	17687;2646	24282	24334	40817	40817					0.01881715515196447
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MSMS	OPSCC_40_ClassI_Rep-2	5	534.7821044921875	2	534.782222	1067.54989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.316	1	41.088	40.588	41.588	-0.2278								0	0	0	0.014435	1	3630	3630		143.37	39.317	1			+	35398	17687;2646	24282	24334	40818	40818					0.01881715515196447
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.7822265625	2	534.782222	1067.54989	-1.1561	-0.00061827	0.94871	0.00050735	-0.2074	-0.00011091	534.7826271131216	41.279	0.91767	41.049	40.733	41.651	-0.23029					59	23	4	0	0	0	0.015512	3	3630	3604;3616;3630		195.05	88.363	1	3614000		+	35399	17687;2646	24282	24334	40819;40820;40821	40821					0.01881715515196447
KTFTTQETI	9	Unmodified	_KTFTTQETI_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.782222	1067.54989	-1.7245	-0.00092221	3.8865	0.0020784	2.162	0.0011562	534.7843934597486	40.772	0.35466	40.542	40.378	40.733	-0.2303	-0.18172	0.0035148	NaN	223.88	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109230		+	35400	17687;2646	24282	24334							0.01881715515196447
KTGAGGRAPS	10	Unmodified	_KTGAGGRAPS_					0	0	0		ENST00000349310.7_1_14:105261854-105262055:-|nuORF	ENST00000349310.7_1_14:105261854-105262055:-|nuORF	ENST00000349310.7_1_14:105261854-105262055:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2472229003906	2	451.246141	900.477728	-0.18171	-8.1994E-05	2.6403	0.0011914	2.4586	0.0011094	451.2474871573439	23.894	0.68933	23.714	23.395	24.084	-0.17989					60	15	6	0	0	0	0.57594	1	988	988		79.713	5.7379	1	1920000			35401	12589	24283	24335	40822	40822					0.02350845952128111
KTGALEGVPIS	11	Unmodified	_KTGALEGVPIS_					0	0	0		ENSG00000196475|ENST00000358842|GK2	ENSG00000196475|ENST00000358842|GK2	ENSG00000196475|ENST00000358842|GK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2898559570312	2	536.305864	1070.59717	1.2885	0.00069103	-1.1242	-0.00060291	0.1643	8.8116E-05	536.3050446213944	82.689	1.0258	82.579	82.126	83.152	-0.11006					42	23	3	0	0	0	0.024731	1	10236	10236		28.081	8.7215	1	503910			35402	9880	24284	24336	40823	40823					0.06469994786198185
KTGHKLQP	8	Unmodified	_KTGHKLQP_					0	0	0		nc|ENSG00000185513|Q9Y468-4|L3MBTL1;nc|ENSG00000185513|Q9Y468-2|L3MBTL1;nc|ENSG00000185513|Q9Y468-1|L3MBTL1;nc|ENSG00000185513|Q9Y468|L3MBTL1;ENSG00000185513|ENST00000418998|L3MBTL1	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7426452636719	2	454.769252	907.52395	0.3993	0.00018159	0.32829	0.0001493	0.72759	0.00033089	454.7690722845708	42.84	0.72689	42.84	42.497	43.224	0					51	19	4	0	0	0	0.027866	1	4030	4030		15.642	6.1713	1	895390			35403	18593	24285	24337	40824	40824					0.06648910854232781
KTGIEIRIIRN	11	Unmodified	_KTGIEIRIIRN_					0	0	0		ENST00000471033.5_1_2:197521363-197521654:+|nuORF	ENST00000471033.5_1_2:197521363-197521654:+|nuORF	ENST00000471033.5_1_2:197521363-197521654:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.2723693847656	3	438.273499	1311.79867	0.61765	0.0002707	-1.1821	-0.0005181	-0.56448	-0.0002474	438.27302580113854	105.33	0.63876	105.33	105.12	105.76	0					38	15	3	0	0	0	1.0592	1	13532	13532		22.562	3.2989	1	662350			35404	14948	24286	24338	40825	40825					0.1552410354256608
KTGIRVYY	8	Unmodified	_KTGIRVYY_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.82379150390625	2	500.284734	998.554916	-0.22921	-0.00011467	-4.0678	-0.0020351	-4.297	-0.0021497	500.2825748875981	33.844	0.61395	33.844	33.554	34.168	0					30	15	3	0	0	0	0.027866	1	2455	2455		26.693	0	1	292000			35405	6111	24287	24339	40826	40826					0.05558064168462806
KTGLPVKFR	9	Unmodified	_KTGLPVKFR_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2864379882812	2	523.329476	1044.6444	-1.7972	-0.00094054	3.5246	0.0018445	1.7274	0.00090397	523.3312545233173	29.227	1.2957	29.227	28.232	29.528	0					56	31	3	0	0	0	0.024466	1	1663	1663		18.262	1.7889	1	378550	+		35406	20008	24288	24340	40827	40827					0.12386318847848088
KTGLPVKFR	9	Unmodified	_KTGLPVKFR_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.329476	1044.6444	-0.74972	-0.00039235	2.3449	0.0012272	1.5952	0.00083481	523.3305011199394	29.141	0.91706	29.144	28.755	29.672	0.0031376	0.032247	2.6987E-06	NaN	18.262	56	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306220	+		35407	20008	24288	24340							0.12386318847848088
KTGLPVKFR	9	Unmodified	_KTGLPVKFR_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.329476	1044.6444	-0.17165	-8.9828E-05	1.5398	0.00080584	1.3682	0.00071601	523.3301611270718	28.882	0.99625	28.963	28.533	29.53	0.080812	-0.14827	-0.00083994	NaN	18.262	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294900	+		35408	20008	24288	24340							0.12386318847848088
KTGLQVHS	8	Unmodified	_KTGLQVHS_					0	0	0		nc|ENSG00000029153|Q8WYA1-9|BMAL2;chr12:27333136-27368262|479|10.58|0.54|4.3|+|ENST00000546179|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;chr12:27368412-27376346|486|13.31|0.4|5.05|+|ENST00000544915|BMAL2,BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2187194824219	2	435.245609	868.476666	-0.85995	-0.00037429	0.12236	5.3257E-05	-0.73759	-0.00032103	435.24533812402046	30.405	0.70134	30.405	30.137	30.838	0					21	16	2	0	0	0	0.027866	1	1958	1958		15.642	8.4485	1	118070			35409	318	24289	24341	40828	40828					0.037166315832337204
KTGLVTTTW	9	Unmodified	_KTGLVTTTW_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7818298339844	2	503.782025	1005.5495	-0.30705	-0.00015469	0.0020019	1.0085E-06	-0.30505	-0.00015368	503.78192229673056	52.005	0.82041	51.886	51.54	52.361	-0.11875					51	21	4	0	0	0	0.2101	2	5381	5381;5394		87.696	24.189	1	4721900			35410	4974	24290	24342	40829;40830	40829					0.04694340585979262
KTGLVTTTW	9	Unmodified	_KTGLVTTTW_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7817077636719	2	503.782025	1005.5495	-1.8151	-0.00091443	1.5841	0.00079803	-0.23106	-0.0001164	503.7827080849777	52.266	0.74137	51.997	51.691	52.432	-0.26904					60	19	4	0	0	0	0.2101	1	5424	5424		87.696	18.91	1	4840000			35411	4974	24290	24342	40831	40831					0.04694340585979262
KTGLVTTTW	9	Unmodified	_KTGLVTTTW_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.78216552734375	2	503.782025	1005.5495	-0.1692	-8.5241E-05	-0.2583	-0.00013013	-0.4275	-0.00021537	503.78176292343045	52.095	0.88216	51.911	51.634	52.516	-0.18404					62	22	4	0	0	0	0.077175	3	5398	5387;5398;5413		118.74	44.488	1	4770300			35412	4974	24290	24342	40832;40833;40834	40833					0.04694340585979262
KTGNWERKV	9	Unmodified	_KTGNWERKV_					0	0	0		ENSG00000077585|ENST00000366592|GPR137B	ENSG00000077585|ENST00000366592|GPR137B	ENSG00000077585|ENST00000366592|GPR137B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2698364257812	2	559.309272	1116.60399	-0.037637	-2.105E-05	3.397	0.0019	3.3594	0.0018789	559.3109288012728	70.829	0.70154	70.84	70.422	71.124	0.010735					40	16	3	0	0	0	0.024541	1	8445	8445		12.207	0	1	1300800			35413	1618	24291	24343	40835	40835					0.050353524574120456
KTGPIAWARG	10	Unmodified	_KTGPIAWARG_					0	0	0			REV__ENST00000528793.5_1_5:176867950-176869060:+|nuORF	REV__ENST00000528793.5_1_5:176867950-176869060:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.8008422851562	2	528.801083	1055.58761	-1.0052	-0.00053155	1.0227	0.0005408	0.017502	9.2549E-06	528.8015017366374	38.675	0.92162	38.454	38.153	39.074	-0.22148					40	24	2	0	0	0	0.64538	1	3204	3204		71.877	2.2498	1	2295600	+		35414	34502	24292	24344	40836	40836					0.0620427129131258
KTGPVAKEL	9	Unmodified	_KTGPVAKEL_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.7845458984375	2	471.784567	941.554582	-1.014	-0.00047839	0.89497	0.00042223	-0.11903	-5.6155E-05	471.78473535912946	25.784	0.70142	25.612	25.241	25.943	-0.17151					35	17	3	0	0	0	0.6238	1	1237	1237		51.193	1.7511	1	605260			35415	4507	24293	24345	40837	40837					0.08146644448606821
KTGPVAKEL	9	Unmodified	_KTGPVAKEL_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.784567	941.554582	-0.44217	-0.00020861	0.26305	0.0001241	-0.17912	-8.4505E-05	471.7845024833498	25.934	0.58142	25.698	25.425	26.007	-0.23603	0.098059	-5.4062E-05	NaN	51.193	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693410			35416	4507	24293	24345							0.08146644448606821
KTGPVAKEL	9	Unmodified	_KTGPVAKEL_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.784567	941.554582	-0.074664	-3.5225E-05	-0.023038	-1.0869E-05	-0.097702	-4.6094E-05	471.7842724691083	25.66	0.63218	25.49	25.205	25.837	-0.17078	-0.11027	-0.00032401	NaN	51.193	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	564300			35417	4507	24293	24345							0.08146644448606821
KTGQCFSL	8	Unmodified	_KTGQCFSL_					0	0	0		ENST00000376259.6_1_1:12267460-12267631:+|nuORF	ENST00000376259.6_1_1:12267460-12267631:+|nuORF	ENST00000376259.6_1_1:12267460-12267631:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2355041503906	2	442.220746	882.426938	-0.20305	-8.9793E-05	-0.99696	-0.00044088	-1.2	-0.00053067	442.22184797871876	33.943	0.42952	33.943	33.739	34.168	0					20	10	3	0	0	0	0.027866	1	2495	2495		53.351	0	1	52243			35418	13177	24294	24346	40838	40838					-0.018978194170813367
KTGQILEEI	9	Unmodified	_KTGQILEEI_					0	0	0			REV__ENST00000342657.7_1_13:53211462-53211567:+|nuORF	REV__ENST00000342657.7_1_13:53211462-53211567:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.263916015625	2	515.792589	1029.57063	-0.63958	-0.00032989	-4.3051	-0.0022206	-4.9447	-0.0025505	515.7914415484178	29.5	0.71666	29.503	29.24	29.956	0.0031376					24	17	2	0	0	0	0.024427	1	1790	1790		26.693	1.1189	1	64830	+		35419	30647	24295	24347	40839	40839					0.057023058948516336
KTGQSIKAR	9	Unmodified	_KTGQSIKAR_					0	0	0			REV__nc|ENSG00000166501|P05771|PRKCB	REV__nc|ENSG00000166501|P05771|PRKCB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.7802734375	2	494.79854	987.582528	0.30213	0.0001495	-2.9395	-0.0014544	-2.6373	-0.001305	494.7966090297797	89.178	0.37692	89.194	88.965	89.342	0.015907					12	8	2	0	0	0	0.024466	1	11179	11179		24.519	0.99649	1	70534	+		35420	26027	24296	24348	40840	40840					0.08823967428702417
KTGRLAPGSA	10	Unmodified	_KTGRLAPGSA_					0	0	0			REV__ENST00000448963.5_1_10:91597071-91597797:+|nuORF	REV__ENST00000448963.5_1_10:91597071-91597797:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2774963378906	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	1.1265	1	9954	9954		24.519	0.99649	1	7407200	+		35421	32665	24297	24349	40841	40841					0.060319920203255606
KTGSVKLS	8	Unmodified	_KTGSVKLS_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.880126953125	2	410.25036	818.486168	0.35451	0.00014544	0.518	0.00021251	0.87251	0.00035795	410.25032607629504	33.304	0.75916	33.304	32.979	33.739	0					46	20	3	0	0	0	0.027866	1	2412	2412		40.778	9.2484	1	1220600	+		35422	23871	24298	24350	40842	40842					0.06966399868758799
KTGSVKLS	8	Unmodified	_KTGSVKLS_					0	0	0			REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	REV__nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.880126953125	2	410.25036	818.486168	1.3398	0.00054966	-0.53824	-0.00022081	0.80158	0.00032885	410.2499275135906	33.127	0.77703	33.184	32.838	33.615	0.056572					45	20	3	0	0	0	0.027866	1	2302	2302		20.947	3.582	1	1061800	+		35423	23871	24298	24350	40843	40843					0.06966399868758799
KTGTAYTF	8	Unmodified	_KTGTAYTF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.726806640625	2	444.726718	887.438883	-1.16	-0.0005159	0.94577	0.00042061	-0.21426	-9.5285E-05	444.7270403678506	38.944	1.4865	38.779	38.32	39.806	-0.16458					115	39	6	0	0	0	0.093853	7	3280	3236;3244;3256;3268;3280;3292;3302		162.31	68.299	1	22321000			35424	2921	24299	24351	40844;40845;40846;40847;40848;40849;40850	40848					-0.009338794022482944
KTGTAYTF	8	Unmodified	_KTGTAYTF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.7266845703125	2	444.726718	887.438883	-0.67193	-0.00029882	0.48551	0.00021592	-0.18642	-8.2904E-05	444.72686319913583	38.957	1.7129	38.734	38.254	39.967	-0.22311					120	44	5	0	0	0	0.04655	6	3240	3227;3240;3251;3263;3275;3287		187.63	90.161	1	20198000			35425	2921	24299	24351	40851;40852;40853;40854;40855;40856	40852					-0.009338794022482944
KTGTAYTF	8	Unmodified	_KTGTAYTF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.7266540527344	2	444.726718	887.438883	0.11975	5.3254E-05	-0.2986	-0.0001328	-0.17886	-7.9542E-05	444.72648666490835	38.967	1.842	38.741	38.246	40.088	-0.2257					131	48	4	0	0	0	0.053308	5	3234	3220;3234;3245;3257;3269		177.71	76.106	1	18509000			35426	2921	24299	24351	40857;40858;40859;40860;40861	40858					-0.009338794022482944
KTGTKGPQRQI	11	Unmodified	_KTGTKGPQRQI_					0	0	0		nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.2386169433594	3	405.238566	1212.69387	0.13612	5.516E-05	-0.0035809	-1.4511E-06	0.13254	5.3709E-05	405.23864125404083	27.134	1.1706	27.121	26.786	27.957	-0.012983					102	30	5	0	0	0	0.81748	2	1436	1436;1447		56.632	5.1045	1	15084000			35427	2055	24300	24352	40862;40863	40862					0.09602982065985088
KTGTKGPQRQI	11	Unmodified	_KTGTKGPQRQI_					0	0	0		nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	nc|ENSG00000096872|Q96LB3-2|IFT74	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.23895263671875	3	405.238566	1212.69387	0.80209	0.00032504	-0.54818	-0.00022214	0.25391	0.00010289	405.23838878540363	27	1.0374	27.081	26.758	27.795	0.081293					99	27	5	0	0	0	0.92638	1	1397	1397		50.034	3.5767	1	14939000			35428	2055	24300	24352	40864	40864					0.09602982065985088
KTGTRGKMK	9	Unmodified	_KTGTRGKMK_					0	0	0		ENST00000583228.5_1_18:224930-224981:-|nuORF	ENST00000583228.5_1_18:224930-224981:-|nuORF	ENST00000583228.5_1_18:224930-224981:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.76373291015625	2	503.794943	1005.57533	-0.0068711	-3.4616E-06	1.3759	0.00069317	1.369	0.00068971	503.7955069977482	35.028	0.23458	34.812	34.753	34.987	-0.21555					7	5	2	0	0	0	0.024397	1	2620	2620		18.262	0	1	102610			35429	17189	24301	24353	40865	40865					0.07276911556630239
KTGTTRPKCD	10	Unmodified	_KTGTTRPKCD_					0	0	0		NTNG1|p.G446R|1|0.16|ENSG00000162631|chr1:107436745-107436745|G/A|missense_variant	NTNG1|p.G446R|1|0.16|ENSG00000162631|chr1:107436745-107436745|G/A|missense_variant	NTNG1|p.G446R|1|0.16|ENSG00000162631|chr1:107436745-107436745|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3060302734375	2	553.784773	1105.55499	-0.92171	-0.00051043	3.0821	0.0017068	2.1604	0.0011964	553.7870259792082	43.654	0.21497	43.654	43.585	43.8	0					8	5	2	0	0	0	0.03519	1	4121	4121		37.508	1.0614	1	125310			35430	18892	24302	24354	40866	40866					0.006436961061581314
KTHDAESVL	9	Unmodified	_KTHDAESVL_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3130187988281	2	500.258914	998.503274	0.045454	2.2739E-05	-1.6124	-0.0008066	-1.5669	-0.00078386	500.2578762374441	77.48	0.42377	77.269	77.08	77.503	-0.21087					14	9	2	0	0	0	0.024344	1	9562	9562		37.812	0	1	146020			35431	10589	24303	24355	40867	40867					0.003962756839086978
KTHKFSAG	8	Unmodified	_KTHKFSAG_					0	0	0		ENSG00000179751|ENST00000318438|SYCN	ENSG00000179751|ENST00000318438|SYCN	ENSG00000179751|ENST00000318438|SYCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.2554931640625	2	438.240327	874.466101	-0.49078	-0.00021508	0.92566	0.00040566	0.43488	0.00019058	438.2404320556296	47.859	0.5881	47.762	47.451	48.039	-0.097553					37	15	3	0	0	0	0.027866	1	4686	4686		2.9294	0	1	299210			35432	8919	24304	24356	40868	40868					0.023846489288075645
KTHKFSAG	8	Unmodified	_KTHKFSAG_					0	0	0		ENSG00000179751|ENST00000318438|SYCN	ENSG00000179751|ENST00000318438|SYCN	ENSG00000179751|ENST00000318438|SYCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	438.240327	874.466101	-0.75705	-0.00033177	0.66383	0.00029092	-0.093223	-4.0854E-05	438.24036768144504	48.158	0.76496	47.882	47.561	48.326	-0.27598	0.093531	0.00040705	NaN	6.3127	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521620			35433	8919	24304	24356							0.023846489288075645
KTHQFFVKS	9	Unmodified	_KTHQFFVKS_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.325439453125	2	561.308741	1120.60293	-0.095174	-5.3422E-05	-2.0007	-0.001123	-2.0959	-0.0011765	561.3075273399338	68.6	0.38848	68.307	68.092	68.48	-0.29267					14	9	2	0	0	0	0.024319	1	8173	8173		39.253	11.371	1	343400			35434	5686	24305	24357	40869	40869					0.047451380885149774
KTHQFFVKS	9	Unmodified	_KTHQFFVKS_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.308741	1120.60293	-0.18494	-0.00010381	-1.3056	-0.00073286	-1.4906	-0.00083667	561.3077514932094	68.237	0.34247	68.237	68.102	68.444	0	-0.072711	0.0005099	NaN	31.53	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447400			35435	5686	24305	24357							0.047451380885149774
KTHRISNL	8	Unmodified	_KTHRISNL_					0	0	0			REV__L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|5|1|sense	REV__L1P4_dup2392|chr10:47973833-47974099:-|2.2218255778478917|0.1395838008548895|3.99|513.0|5|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7700500488281	2	484.785433	967.556313	-0.46684	-0.00022632	0.265	0.00012847	-0.20184	-9.7848E-05	484.7873724309614	80.184	0.21085	80.184	79.994	80.205	0					5	4	2	0	0	0	0.027866	1	9946	9946		31.53	0	1	33249	+		35436	36221	24306	24358	40870	40870					0.07123698257214528
KTHSLKMRKLI	11	Unmodified	_KTHSLKMRKLI_					0	0	0			REV__nc|ENSG00000204410|O43196-4|MSH5	REV__nc|ENSG00000204410|O43196-4|MSH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2426452636719	3	452.28323	1353.82786	0.32748	0.00014811	4.4344	0.0020056	4.7618	0.0021537	452.2845148935435	53.922	0.37897	53.922	53.835	54.214	0					11	10	2	0	0	0	0.024792	1	5889	5889		13.508	8.3656	1	111490	+		35437	37078	24307	24359	40871	40871					0.16509924567208145
KTHTGEKPH	9	Unmodified	_KTHTGEKPH_					0	0	0		ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7815551757812	2	517.772522	1033.53049	-0.14953	-7.7421E-05	-2.2707	-0.0011757	-2.4203	-0.0012531	518.2735914653249	41.788	0.24659	41.788	41.579	41.825	0					9	6	2	0	0	0	0.024506	1	3790	3790		16.473	6.2079	1	385700			35438	8361	24308	24360	40872	40872					0.01506804014957197
KTHYLCLP	8	Unmodified	_KTHYLCLP_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7794189453125	2	487.760038	973.505523	-0.36533	-0.00017819	0.29843	0.00014556	-0.066902	-3.2632E-05	487.76084114678537	56.968	0.36531	56.968	56.745	57.111	0					14	10	2	0	0	0	0.027866	1	6376	6376		29.15	0	1	96509	+		35439	24594	24309	24361	40873	40873					0.017710328880070847
KTHYNRAE	8	Unmodified	_KTHYNRAE_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2740173339844	2	509.756872	1017.49919	0.10099	5.148E-05	2.3496	0.0011977	2.4506	0.0012492	510.2594619565129	90.663	0.16537	90.674	90.576	90.742	0.011276					5	3	2	0	0	0	0.027866	1	11392	11392		10.265	0	1	62792	+		35440	25466	24310	24362	40874	40874					-0.008857690191462098
KTIADLELHY	10	Unmodified	_KTIADLELHY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.55218505859375	3	401.552039	1201.63429	-0.092689	-3.7219E-05	0.48577	0.00019506	0.39309	0.00015784	401.55214922258466	55.905	0.71399	55.748	55.462	56.176	-0.15656					64	18	4	0	0	0	0.38938	2	6032	6032;6044		99.788	13.864	1	2778000			35441	2053	24311	24363	40875;40876	40875					0.04153666331944805
KTIADLELHY	10	Unmodified	_KTIADLELHY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.5517272949219	3	401.552039	1201.63429	1.1088	0.00044526	-0.72691	-0.00029189	0.38194	0.00015337	401.55167004964267	55.983	0.94347	55.767	55.485	56.429	-0.21607					65	24	4	0	0	0	0.096948	2	6047	6031;6047		136.52	57.445	1	2805900			35442	2053	24311	24363	40877;40878	40878					0.04153666331944805
KTIADLELHY	10	Unmodified	_KTIADLELHY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.82373046875	2	601.824421	1201.63429	-0.40657	-0.00024468	0.66506	0.00040025	0.25849	0.00015557	601.8244651467973	55.952	0.90439	55.736	55.447	56.351	-0.21607					61	23	4	0	0	0	0.03873	1	6049	6049		180.87	71.431	1	1822900			35443	2053	24311	24363	40879	40879					0.04153666331944805
KTIADLELHY	10	Unmodified	_KTIADLELHY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.55224609375	3	401.552039	1201.63429	-1.4553	-0.00058436	1.8774	0.00075389	0.42218	0.00016953	401.55268587070384	56.018	0.90607	55.802	55.489	56.395	-0.21551					67	23	4	0	0	0	0.27019	3	6036	6025;6036;6048		112.3	14.699	1	2477500			35444	2053	24311	24363	40880;40881;40882	40881					0.04153666331944805
KTIADLELHY	10	Unmodified	_KTIADLELHY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	601.824421	1201.63429	-1.0946	-0.00065874	0.97743	0.00058824	-0.11714	-7.0496E-05	601.824863091339	55.954	0.71399	55.797	55.462	56.176	-0.15656	0.021685	2.0135E-05	NaN	180.87	49	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1821200			35445	2053	24311	24363							0.04153666331944805
KTIADLELHY	10	Unmodified	_KTIADLELHY_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	601.824421	1201.63429	-1.2862	-0.00077406	0.99062	0.00059618	-0.29557	-0.00017788	601.824929355898	56.009	0.82846	55.794	55.45	56.278	-0.21551	0.017852	3.6011E-05	NaN	180.87	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1759400			35446	2053	24311	24363							0.04153666331944805
KTIAKRLE	8	Unmodified	_KTIAKRLE_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;nc|ENSG00000154027|Q9Y6K8-2|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2773742675781	2	479.805834	957.597115	-0.26607	-0.00012766	0.25279	0.00012129	-0.013282	-6.3728E-06	479.8058354098204	21.453	0.33958	21.453	21.244	21.584	0					10	6	2	0	0	0	0.027866	1	650	650		20.947	10.081	1	28183			35447	6377	24312	24364	40883	40883					0.1166203957683365
KTIDPLIY	8	Unmodified	_KTIDPLIY_					0	0	0			REV__ENSG00000137547|ENST00000260102|MRPL15	REV__ENSG00000137547|ENST00000260102|MRPL15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.76123046875	2	481.781493	961.548434	-0.18078	-8.7097E-05	-0.65737	-0.00031671	-0.83815	-0.00040381	481.78133755379525	41.851	0.2521	41.874	41.706	41.958	0.023006					9	6	2	0	0	0	0.027866	1	3742	3742		31.955	7.7521	1	102660	+		35448	23767	24313	24365	40884	40884					0.06612126217089553
KTIEEDKTS	9	Unmodified	_KTIEEDKTS_					0	0	0			REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7693481445312	2	525.769311	1049.52407	-0.2382	-0.00012524	1.397	0.00073451	1.1588	0.00060927	525.7696377190431	34.178	1.1044	33.953	33.68	34.785	-0.22412					73	27	5	0	0	0	0.56934	2	2507	2482;2507		54.776	12.302	1	9560100	+		35449	26481	24314	24366	40885;40886	40886					0.001288212729150473
KTIEEDKTS	9	Unmodified	_KTIEEDKTS_					0	0	0			REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7694091796875	2	525.769311	1049.52407	-0.33165	-0.00017437	1.5939	0.00083804	1.2623	0.00066367	525.7695742420977	34.074	1.1849	33.867	33.627	34.812	-0.20696					73	29	4	0	0	0	0.56934	1	2471	2471		54.776	7.119	1	9132600	+		35450	26481	24314	24366	40887	40887					0.001288212729150473
KTIEEDKTS	9	Unmodified	_KTIEEDKTS_					0	0	0			REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.769287109375	2	525.769311	1049.52407	-0.95878	-0.0005041	2.488	0.0013081	1.5292	0.00080401	525.7700844210527	34.093	1.1087	33.918	33.662	34.771	-0.17557					82	27	4	0	0	0	0.77768	1	2463	2463		40.778	1.5253	1	9799400	+		35451	26481	24314	24366	40888	40888					0.001288212729150473
KTIERPLDT	9	Unmodified	_KTIERPLDT_					0	0	0		nc|ENSG00000107614|O14717-6|TRDMT1	nc|ENSG00000107614|O14717-6|TRDMT1	nc|ENSG00000107614|O14717-6|TRDMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.780517578125	2	536.803488	1071.59242	-1.5576	-0.00083611	-3.3605	-0.0018039	-4.918	-0.00264	537.3026428688586	35.715	0.42465	35.672	35.405	35.83	-0.042458					12	9	2	0	0	0	0.024418	1	2720	2720		54.776	8.8041	1	272100			35452	18159	24315	24367	40889	40889					0.05949110643427957
KTIERPLDT	9	Unmodified	_KTIERPLDT_					0	0	0		nc|ENSG00000107614|O14717-6|TRDMT1	nc|ENSG00000107614|O14717-6|TRDMT1	nc|ENSG00000107614|O14717-6|TRDMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.803488	1071.59242	-0.85664	-0.00045985	2.6338	0.0014138	1.7771	0.00095397	536.8047208917778	36.058	1.0165	35.853	35.186	36.203	-0.20518	0.054595	0.0019494	NaN	45.972	30	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285910			35453	18159	24315	24367							0.05949110643427957
KTIGKVSL	8	Unmodified	_KTIGKVSL_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.27545166015625	2	423.276378	844.538203	1.05	0.00044445	-4.4628	-0.001889	-3.4128	-0.0014446	423.2743858254429	87.783	1.1949	87.802	87.388	88.583	0.018555					70	28	4	0	0	0	1.0574	1	10993	10993		23.042	1.0826	1	2440400	+		35454	20971	24316	24368	40890	40890					0.10971563282521402
KTIGLREVW	9	Unmodified	_KTIGLREVW_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3240966796875	2	551.324391	1100.63423	0.062252	3.4321E-05	-0.019665	-1.0842E-05	0.042587	2.3479E-05	551.3241524299505	50.149	0.7127	50.043	49.745	50.457	-0.10558					61	18	4	0	0	0	0.041068	3	5081	5071;5081;5095		132.76	43.532	1	3710700			35455	1995	24317	24369	40891;40892;40893	40892					0.08793711122621062
KTIGLREVW	9	Unmodified	_KTIGLREVW_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3238525390625	2	551.324391	1100.63423	0.079344	4.3745E-05	0.0093605	5.1607E-06	0.088705	4.8905E-05	551.3242040617303	50.443	0.93619	50.163	49.839	50.775	-0.27977					65	24	4	0	0	0	0.034407	3	5117	5104;5117;5130		138.06	32.704	1	4428900			35456	1995	24317	24369	40894;40895;40896	40895					0.08793711122621062
KTIGLREVW	9	Unmodified	_KTIGLREVW_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3240356445312	2	551.324391	1100.63423	0.25516	0.00014067	-0.25411	-0.0001401	0.0010424	5.7467E-07	551.3241021361464	50.243	0.85913	50.062	49.788	50.647	-0.18071					49	22	3	0	0	0	0.071379	3	5081	5081;5092;5105		120.87	27.673	1	4231500			35457	1995	24317	24369	40897;40898;40899	40897					0.08793711122621062
KTIGYDPII	9	Unmodified	_KTIGYDPII_					0	0	0		ENSG00000092621|ENST00000641023|PHGDH	ENSG00000092621|ENST00000641023|PHGDH	ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2916259765625	2	510.292225	1018.5699	-0.1245	-6.3533E-05	-0.2578	-0.00013155	-0.38231	-0.00019509	510.2919703013346	58.617	0.80193	58.429	58.136	58.938	-0.18795					39	19	3	0	0	0	0.043667	1	6447	6447		131.03	51.58	1	2519600			35458	1994	24318	24370	40900	40900					0.061355112458159056
KTIGYDPII	9	Unmodified	_KTIGYDPII_					0	0	0		ENSG00000092621|ENST00000641023|PHGDH	ENSG00000092621|ENST00000641023|PHGDH	ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2919921875	2	510.292225	1018.5699	-0.050037	-2.5533E-05	-0.14602	-7.451E-05	-0.19605	-0.00010004	510.2919746900871	58.598	0.92779	58.417	58.145	59.072	-0.18134					39	22	2	0	0	0	0.28753	1	6449	6449		77.318	8.5308	1	2435200			35459	1994	24318	24370	40901	40901					0.061355112458159056
KTIGYDPII	9	Unmodified	_KTIGYDPII_					0	0	0		ENSG00000092621|ENST00000641023|PHGDH	ENSG00000092621|ENST00000641023|PHGDH	ENSG00000092621|ENST00000641023|PHGDH	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	510.292225	1018.5699	0.56749	0.00028959	-1.3908	-0.00070971	-0.82329	-0.00042012	510.29156181663086	58.705	0.72216	58.464	58.173	58.895	-0.24166	0.02734	-0.00090796	NaN	131.03	39	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2089600			35460	1994	24318	24370							0.061355112458159056
KTIKKTPLS	9	Unmodified	_KTIKKTPLS_					0	0	0			REV__nc|ENSG00000138674|O94979-2|SEC31A;REV__nc|ENSG00000138674|O94979-7|SEC31A	REV__nc|ENSG00000138674|O94979-2|SEC31A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.32843017578125	2	508.329142	1014.64373	-0.64917	-0.00032999	-0.27166	-0.00013809	-0.92082	-0.00046808	508.32890260449796	33.665	0.70768	33.665	33.421	34.129	0					53	18	4	0	0	0	0.42604	1	2463	2463		64.207	5.4253	1	2050100	+		35461	23882;36709	24319	24371	40902	40902					0.1369947940813745
KTIKLWKS	8	Unmodified	_KTIKLWKS_					0	0	0		ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.738037109375	2	502.318577	1002.6226	-0.46106	-0.0002316	0.24687	0.00012401	-0.21419	-0.00010759	502.3187990394288	36.167	0.49658	35.962	35.786	36.282	-0.20518					31	13	3	0	0	0	0.027866	1	2854	2854		10.265	0	1	802660			35462	9858	24320	24372	40903	40903					0.12139514099271764
KTILPLINF	9	Unmodified	_KTILPLINF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000569929.5_1_16:81888133-81917132:+|nuORF;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7633056640625	2	529.83406	1057.65357	-0.24642	-0.00013056	-0.01028	-5.4469E-06	-0.2567	-0.00013601	529.833902108388	82.09	0.77107	81.896	81.634	82.405	-0.19333					34	17	3	0	0	0	0.024523	1	9903	9903		29.15	16.943	1	320210			35463	10069	24321	24373	40904	40904					0.12704667413527204
KTILPLINF	9	Unmodified	_KTILPLINF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000569929.5_1_16:81888133-81917132:+|nuORF;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;PLCG2|p.G805Afs*31|1|0.37|ENSG00000197943|chr16:81923587-81923587|G/-|frameshift_variant	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.763916015625	2	529.83406	1057.65357	-0.79473	-0.00042108	0.66728	0.00035355	-0.12745	-6.7527E-05	529.834268012657	82.056	0.64435	81.916	81.659	82.303	-0.14014					30	14	3	0	0	0	0.024466	1	9882	9882		24.519	3.5723	1	270000			35464	10069	24321	24373	40905	40905					0.12704667413527204
KTINDFDEP	9	Unmodified	_KTINDFDEP_					0	0	0			REV__nc|ENSG00000166736|P46098-3|HTR3A	REV__nc|ENSG00000166736|P46098-3|HTR3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2953491210938	2	539.756204	1077.49785	-1.4932	-0.00080596	1.603	0.0008652	0.10977	5.9248E-05	539.7565923024417	81.101	0.48215	81.125	80.929	81.411	0.023911					15	11	2	0	0	0	0.024313	1	10009	10009		51.193	7.0759	1	66703	+		35465	26048	24322	24374	40906	40906					-0.03779447898568833
KTINKMKT	8	Unmodified	_KTINKMKT_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.80548095703125	2	482.28642	962.558287	-0.74748	-0.0003605	-2.1342	-0.0010293	-2.8817	-0.0013898	482.28510022487484	53.368	0.68954	53.22	52.985	53.675	-0.14723					30	18	2	0	0	0	0.027866	1	5788	5788		36.447	0	1	465280			35466	6256	24323	24375	40907	40907					0.07550990950824144
KTINSEIQL	9	Unmodified	_KTINSEIQL_					0	0	0		ENST00000597828.5_1_3:181417563-181457401:+|nuORF	ENST00000597828.5_1_3:181417563-181457401:+|nuORF	ENST00000597828.5_1_3:181417563-181457401:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3005981445312	2	523.298039	1044.58152	-0.5436	-0.00028447	-1.1571	-0.0006055	-1.7007	-0.00088997	523.2976128933077	51.764	1.6523	51.764	51.212	52.864	0					140	44	5	0	0	0	0.091713	1	5584	5584		113.41	17.596	1	26642000			35467	17457	24324	24376	40908	40908					0.06101708269147821
KTINSEIQL	9	Unmodified	_KTINSEIQL_					0	0	0		ENST00000597828.5_1_3:181417563-181457401:+|nuORF	ENST00000597828.5_1_3:181417563-181457401:+|nuORF	ENST00000597828.5_1_3:181417563-181457401:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3001708984375	2	523.298039	1044.58152	-0.62686	-0.00032804	-1.0592	-0.00055425	-1.686	-0.00088229	523.2975835347956	52.011	1.7959	51.863	51.336	53.132	-0.14735					115	48	4	0	0	0	0.34489	1	5585	5585		69.628	3.1983	1	24060000			35468	17457	24324	24376	40909	40909					0.06101708269147821
KTINTRLIS	9	Unmodified	_KTINTRLIS_					0	0	0		CUL1|p.E194K|1|0.33|ENSG00000055130|chr7:148759593-148759593|G/A|missense_variant	CUL1|p.E194K|1|0.33|ENSG00000055130|chr7:148759593-148759593|G/A|missense_variant	CUL1|p.E194K|1|0.33|ENSG00000055130|chr7:148759593-148759593|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3135986328125	2	523.321848	1044.62914	-0.88251	-0.00046184	2.7441	0.001436	1.8615	0.00097419	523.3230413786606	72.778	0.52587	72.778	72.656	73.182	0					21	12	2	0	0	0	0.024447	1	8912	8912		25.574	10.709	1	124570			35469	607	24325	24377	40910	40910					0.10861407259994849
KTIPKRNL	8	Unmodified	_KTIPKRNL_					0	0	0		ENST00000368759.5_1_10:127522417-127522480:+|nuORF	ENST00000368759.5_1_10:127522417-127522480:+|nuORF	ENST00000368759.5_1_10:127522417-127522480:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.31243896484375	2	485.313826	968.613099	-0.19609	-9.5163E-05	-0.68154	-0.00033076	-0.87763	-0.00042592	485.31350998505343	40.188	1.7945	40.076	39.754	41.548	-0.11223					134	49	5	0	0	0	0.93274	1	3537	3537		47.916	0	1	28426000			35470	12905	24326	24378	40911	40911					0.12753745813745354
KTIQEVAGY	9	Unmodified	_KTIQEVAGY_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR;nc|ENSG00000146648|P00533-2|EGFR;EGFR|p.A289Rfs*9|1|0.03|ENSG00000146648|chr7:55154126-55154138|GTGCCACCTGCGT/-|frameshift_variant	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7705383300781	2	504.771657	1007.52876	-0.046339	-2.3391E-05	-0.23655	-0.00011941	-0.28289	-0.0001428	504.771316336536	42.512	0.9451	42.389	42.116	43.061	-0.12299					59	24	4	0	0	0	0.16539	1	3842	3842		96.034	24.156	1	2309900			35471	5898	24327	24379	40912	40912					0.02529750206326753
KTIQEVAGY	9	Unmodified	_KTIQEVAGY_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR;nc|ENSG00000146648|P00533-2|EGFR;EGFR|p.A289Rfs*9|1|0.03|ENSG00000146648|chr7:55154126-55154138|GTGCCACCTGCGT/-|frameshift_variant	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7705993652344	2	504.771657	1007.52876	-0.453	-0.00022866	0.18645	9.4116E-05	-0.26654	-0.00013454	504.7715532116708	42.673	0.72863	42.441	42.194	42.923	-0.23186					50	18	4	0	0	0	0.18994	1	3858	3858		90.601	10.146	1	2349800			35472	5898	24327	24379	40913	40913					0.02529750206326753
KTIQEVAGY	9	Unmodified	_KTIQEVAGY_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR;nc|ENSG00000146648|P00533-2|EGFR;EGFR|p.A289Rfs*9|1|0.03|ENSG00000146648|chr7:55154126-55154138|GTGCCACCTGCGT/-|frameshift_variant	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7707824707031	2	504.771657	1007.52876	-0.68406	-0.0003453	0.19164	9.6733E-05	-0.49243	-0.00024856	504.77158813892197	42.731	1.0896	42.505	42.22	43.31	-0.22597					62	28	4	0	0	0	0.29609	1	3859	3859		76.17	10.367	1	2404500			35473	5898	24327	24379	40914	40914					0.02529750206326753
KTIRTQND	8	Unmodified	_KTIRTQND_					0	0	0			REV__nc|ENSG00000197694|Q13813|SPTAN1	REV__nc|ENSG00000197694|Q13813|SPTAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.281982421875	2	488.26453	974.514508	-0.13397	-6.5414E-05	-2.5757	-0.0012576	-2.7097	-0.0013231	488.2632727288809	80.891	0.47912	80.653	80.369	80.848	-0.23784					14	11	2	0	0	0	0.027866	1	9687	9687		29.15	0	1	55664	+		35474	28337	24328	24380	40915	40915					0.02623097778052852
KTISFLIE	8	Unmodified	_KTISFLIE_					0	0	0			REV__ENST00000557377.1_1_14:80993211-80993310:-|nuORF	REV__ENST00000557377.1_1_14:80993211-80993310:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2852783203125	2	475.781493	949.548434	0.21266	0.00010118	1.6448	0.00078255	1.8574	0.00088373	475.7809298596252	102.09	1.1661	101.96	101.07	102.23	-0.12666					38	28	2	0	0	0	0.95679	1	12691	12691		44.117	8.4985	1	126380	+		35475	35067	24329	24381	40916	40916					0.07164126217094235
KTKAAVVTL	9	Unmodified	_KTKAAVVTL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.80291748046875	2	465.80276	929.590967	0.44089	0.00020537	-0.40427	-0.00018831	0.036618	1.7057E-05	465.8024280292143	32.361	0.68573	32.168	31.771	32.457	-0.19261					35	15	3	0	0	0	0.37611	1	2233	2233		67.494	3.2864	1	913200			35476	1335	24330	24382	40917	40917					0.12335521345323741
KTKAGKKK	8	Unmodified	_KTKAGKKK_					0	0	0		ENSG00000198920|ENST00000361413|KIAA0753;nc|ENSG00000198920|Q2KHM9-2|KIAA0753;KIAA0753|p.E916Qfs*7|1|0.28|ENSG00000198920|chr17:6589803-6589819|AAGGAGCCTACAGCCTC/-|frameshift_variant	ENSG00000198920|ENST00000361413|KIAA0753	ENSG00000198920|ENST00000361413|KIAA0753	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.7613220214844	2	444.803094	887.591636	0.054521	2.4251E-05	-1.61	-0.00071611	-1.5554	-0.00069186	444.80024881813017	24.034	0.13232	23.819	23.733	23.866	-0.2151					4	2	2	0	0	0	0.027866	1	1018	1018		1.2052	0	1	6066.4			35477	10252	24331	24383	40918	40918					0.14334360785016997
KTKANVTVE	9	Unmodified	_KTKANVTVE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2870178222656	2	495.284931	988.55531	0.28041	0.00013888	3.9866	0.0019745	4.2671	0.0021134	495.28680280311136	67.466	0.95113	67.211	66.87	67.821	-0.25516					62	22	4	0	0	0	0.39228	1	7772	7772		66.429	6.311	1	5314400			35478	6479	24332	24384	40919	40919					0.060574390976512404
KTKAPAALN	9	Unmodified	_KTKAPAALN_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7832336425781	2	457.276909	912.539266	0.17081	7.8109E-05	0.021711	9.9281E-06	0.19253	8.8037E-05	457.27663981258996	49.83	1.2618	49.678	49.33	50.592	-0.1512					69	35	4	0	0	0	0.024319	1	5092	5092		31.53	0	1	1707100	+		35479	23929	24333	24385	40920	40920					0.07949777651413115
KTKAPAALN	9	Unmodified	_KTKAPAALN_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.276909	912.539266	0.56876	0.00026008	-0.4854	-0.00022196	0.083357	3.8117E-05	457.2764234092381	49.625	1.2195	49.625	49.324	50.544	0	-0.0080319	-0.00048004	NaN	29.17	60	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1589100	+		35480	23929	24333	24385							0.07949777651413115
KTKATINID	9	Unmodified	_KTKATINID_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2936706542969	2	502.292756	1002.57096	-0.23207	-0.00011657	-4.0068	-0.0020126	-4.2388	-0.0021291	502.79241860102064	78.231	0.42754	77.977	77.743	78.17	-0.25471					12	9	2	0	0	0	0.024261	1	9298	9298		54.776	16.965	1	143900			35481	6655	24334	24386	40921	40921					0.06977725614694918
KTKDGVVEI	9	Unmodified	_KTKDGVVEI_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.78564453125	2	494.787307	987.560061	-0.40307	-0.00019943	-2.1959	-0.0010865	-2.5989	-0.0012859	494.78541855198455	32.696	0.90815	32.459	32.042	32.95	-0.23666					61	21	5	0	0	0	0.26966	1	2272	2272		79.713	0.26157	1	2868900			35482	2767	24335	24387	40922	40922					0.06578323240421469
KTKDGVVEI	9	Unmodified	_KTKDGVVEI_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7862548828125	2	494.787307	987.560061	0.38939	0.00019266	-2.3259	-0.0011508	-1.9365	-0.00095817	494.78527947553744	32.667	0.95605	32.475	32.029	32.985	-0.19261					52	22	4	0	0	0	0.26966	1	2268	2268		79.713	0.26157	1	2605500			35483	2767	24335	24387	40923	40923					0.06578323240421469
KTKDIVNGL	9	Unmodified	_KTKDIVNGL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.2952880859375	2	494.295299	986.576045	-0.6192	-0.00030607	0.42573	0.00021043	-0.19348	-9.5636E-05	494.29536551032874	35.415	0.77255	35.2	34.833	35.606	-0.21556					39	19	3	0	0	0	0.014988	2	2696	2682;2696		161.9	66.083	1	1741600			35484	1617	24336	24388	40924;40925	40925					0.08222029477315118
KTKDIVNGL	9	Unmodified	_KTKDIVNGL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.29547119140625	2	494.295299	986.576045	-0.40595	-0.00020066	0.19187	9.4843E-05	-0.21408	-0.00010582	494.2952388496306	35.386	0.74203	35.174	34.806	35.548	-0.21246					44	18	3	0	0	0	0.028071	2	2676	2676;2695		143.11	52.33	1	1746900			35485	1617	24336	24388	40926;40927	40926					0.08222029477315118
KTKDIVNGL	9	Unmodified	_KTKDIVNGL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2960510253906	2	494.295299	986.576045	-0.49697	-0.00024565	0.17144	8.4741E-05	-0.32554	-0.00016091	494.2952166474844	35.347	0.71351	35.16	34.873	35.587	-0.18675					37	18	3	0	0	0	0.025498	1	2665	2665		145.16	60.24	1	1722900			35486	1617	24336	24388	40928	40928					0.08222029477315118
KTKEAGKI	8	Unmodified	_KTKEAGKI_					0	0	0		ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	ENSG00000100983|ENST00000651619|GSS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.7716369628906	2	437.77146	873.528367	0.27007	0.00011823	-0.026025	-1.1393E-05	0.24405	0.00010684	437.7712939409475	22.026	0.76335	21.837	21.338	22.102	-0.18894					30	15	3	0	0	0	1.043	1	752	752		30.504	2.6214	1	266400			35487	2267	24337	24389	40929	40929					0.08654375277126292
KTKEAVLL	8	Unmodified	_KTKEAVLL_					0	0	0		ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2889404296875	2	451.289485	900.564418	0.071606	3.2315E-05	-0.049009	-2.2117E-05	0.022596	1.0198E-05	451.28922649195164	32.922	0.89132	32.691	32.423	33.314	-0.23107					41	21	3	0	0	0	0.38451	1	2306	2306		99.375	11.621	1	1089600			35488	8468	24338	24390	40930	40930					0.11015832453995245
KTKEAVLLL	9	Unmodified	_KTKEAVLLL_					0	0	0		ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135660-185136437:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8309020996094	2	507.831517	1013.64848	-0.60455	-0.00030701	0.025687	1.3045E-05	-0.57886	-0.00029396	507.8313981403844	46.755	0.79818	46.561	46.238	47.036	-0.19387					65	22	4	0	0	0	0.094442	1	4536	4536		112.41	5.4034	1	3847300			35489	8468	24339	24391	40931	40931					0.14220363550907678
KTKEGVREV	9	Unmodified	_KTKEGVREV_					0	0	0		ENSG00000143878|ENST00000272233|RHOB;ENST00000473074.1_1_1:113244164-113245337:-|nuORF;ENSG00000155366|ENST00000339083|RHOC	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303466796875	2	523.303655	1044.59276	2.6993	0.0014126	-3.4013	-0.0017799	-0.70201	-0.00036736	523.3017812429691	17.966	0.83408	17.966	17.548	18.382	0					43	16	4	0	0	0	0.43628	1	224	224		63.534	0	1	1007000			35490	5697	24340	24392	40932	40932					0.07224530363282611
KTKEGVREV	9	Unmodified	_KTKEGVREV_					0	0	0		ENSG00000143878|ENST00000272233|RHOB;ENST00000473074.1_1_1:113244164-113245337:-|nuORF;ENSG00000155366|ENST00000339083|RHOC	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3035888671875	2	523.303655	1044.59276	0.086315	4.5169E-05	-0.67505	-0.00035326	-0.58873	-0.00030809	523.3031873291252	18.158	0.83729	18.026	17.613	18.45	-0.13147					34	16	4	0	0	0	0.11727	2	247	236;247		106.68	8.0537	1	722720			35491	5697	24340	24392	40933;40934	40934					0.07224530363282611
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.3111572265625	2	569.311146	1136.60774	-0.15279	-8.6987E-05	-0.46677	-0.00026574	-0.61957	-0.00035273	569.3109115287047	31.407	1.4193	31.166	30.834	32.253	-0.24109					134	34	6	0	0	0	0.013065	7	2059	2059;2068;2080;2092;2104;2118;2130		185.55	103.31	1	38010000			35492	4776	24341	24393	40935;40936;40937;40938;40939;40940;40941	40935					0.04489977440630355
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.3109741210938	2	569.311146	1136.60774	-0.20215	-0.00011508	-0.41191	-0.00023451	-0.61406	-0.00034959	569.3109444410052	31.308	1.6422	31.123	30.743	32.385	-0.18503					149	39	6	0	0	0	0.015032	7	2046	2046;2056;2068;2079;2091;2103;2116		204.62	98.21	1	37412000			35493	4776	24341	24393	40942;40943;40944;40945;40946;40947;40948	40942					0.04489977440630355
KTKEIEQVY	9	Unmodified	_KTKEIEQVY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.3109741210938	2	569.311146	1136.60774	-0.32133	-0.00018294	-0.31215	-0.00017771	-0.63349	-0.00036065	569.3109859121015	31.366	1.4028	31.214	30.887	32.29	-0.15231					131	34	5	0	0	0	0.014738	7	2067	2034;2043;2055;2067;2079;2092;2105		195.05	88.631	1	37617000			35494	4776	24341	24393	40949;40950;40951;40952;40953;40954;40955	40952					0.04489977440630355
KTKEKDKLK	9	Unmodified	_KTKEKDKLK_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.333984375	2	559.350606	1116.68666	0.53295	0.00029811	-2.3925	-0.0013382	-1.8595	-0.0010401	559.3494405098329	51.563	0.18471	51.444	51.319	51.504	-0.11876					9	4	3	0	0	0	0.024539	1	5302	5302		20.947	0	1	279740	+		35495	28819	24342	24394	40956	40956					0.1329824946556073
KTKERMRP	8	Unmodified	_KTKERMRP_					0	0	0		ENSG00000113319|ENST00000265080|RASGRF2;ENST00000502677.1_1_5:80366283-80383248:+|nuORF	ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3035888671875	2	523.300393	1044.58623	2.6993	0.0014126	2.8333	0.0014827	5.5326	0.0028952	523.3017812429691	17.966	0.83408	17.966	17.548	18.382	0					43	16	4	0	0	0	0.87658	1	248	248		52.937	3.4007	1	1007000			35496	3281	24343	24395	40957	40957					0.06572313930905693
KTKETIQVL	9	Unmodified	_KTKETIQVL_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE;ENST00000509823.1_1_4:104037714-104041478:-|nuORF	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.3236083984375	2	530.324057	1058.63356	-0.16532	-8.7673E-05	-0.023147	-1.2276E-05	-0.18847	-9.9949E-05	530.3238764022794	36.692	0.59647	36.486	36.242	36.839	-0.20518					43	14	5	0	0	0	0.30449	1	2898	2898		75.043	10.836	1	1434900			35497	5284	24344	24396	40958	40958					0.10658871682880999
KTKETIQVL	9	Unmodified	_KTKETIQVL_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE;ENST00000509823.1_1_4:104037714-104041478:-|nuORF	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.3231811523438	2	530.324057	1058.63356	-0.58568	-0.0003106	0.53556	0.00028402	-0.050115	-2.6577E-05	530.3242567087781	36.728	0.48335	36.511	36.245	36.729	-0.21661					38	11	4	0	0	0	0.14181	2	2898	2886;2898		101.25	7.9839	1	1526600			35498	5284	24344	24396	40959;40960	40960					0.10658871682880999
KTKETIQVL	9	Unmodified	_KTKETIQVL_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE;ENST00000509823.1_1_4:104037714-104041478:-|nuORF	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3239135742188	2	530.324057	1058.63356	1.5522	0.00082316	-1.8785	-0.0009962	-0.32629	-0.00017304	530.32298219644	36.686	0.60487	36.476	36.201	36.806	-0.2092					34	14	3	0	0	0	0.17845	1	2887	2887		93.143	13.431	1	1486400			35499	5284	24344	24396	40961	40961					0.10658871682880999
KTKETSVNW	9	Unmodified	_KTKETSVNW_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-5|ADAR	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7876586914062	2	546.787838	1091.56112	-0.71871	-0.00039298	-0.015411	-8.4263E-06	-0.73413	-0.00040141	546.7878283397603	29.878	1.1016	29.634	29.143	30.245	-0.24415					73	25	4	0	0	0	0.014738	3	1872	1850;1858;1872		163.15	53.673	1	4987300			35500	6833	24345	24397	40962;40963;40964	40964					0.01900537609321873
KTKETSVNW	9	Unmodified	_KTKETSVNW_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-5|ADAR	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.7877197265625	2	546.787838	1091.56112	-0.86186	-0.00047126	0.13181	7.2074E-05	-0.73005	-0.00039918	546.7878747018168	29.726	1.0568	29.553	29.113	30.17	-0.17258					66	24	4	0	0	0	0.015032	3	1833	1824;1833;1845		190.26	77.851	1	5168900			35501	6833	24345	24397	40965;40966;40967	40966					0.01900537609321873
KTKETSVNW	9	Unmodified	_KTKETSVNW_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;nc|ENSG00000160710|P55265-5|ADAR	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7877807617188	2	546.787838	1091.56112	-0.51032	-0.00027904	-0.33565	-0.00018353	-0.84598	-0.00046257	546.7876428131485	29.712	1.1302	29.563	29.129	30.259	-0.14952					79	26	4	0	0	0	0.034407	4	1829	1807;1816;1829;1843		138.06	41.725	1	5579400			35502	6833	24345	24397	40968;40969;40970;40971	40970					0.01900537609321873
KTKEVLQEW	9	Unmodified	_KTKEVLQEW_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.8192749023438	2	580.819138	1159.62372	-0.78548	-0.00045622	0.31766	0.00018451	-0.46781	-0.00027171	580.8193003318312	39.227	0.97369	39.063	38.795	39.768	-0.16458					79	25	4	0	0	0	0.01388	4	3296	3296;3304;3317;3330		195.06	0	1	7653300			35503	8217	24346	24398	40972;40973;40974;40975	40972					0.050296836775032716
KTKEVLQEW	9	Unmodified	_KTKEVLQEW_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.8189086914062	2	580.819138	1159.62372	-1.2588	-0.00073112	0.61356	0.00035637	-0.64522	-0.00037476	580.8194697306761	39.315	1.1446	39.092	38.823	39.967	-0.22311					81	29	4	0	0	0	0.013924	4	3322	3301;3310;3322;3334		185.72	0	1	7041600			35504	8217	24346	24398	40976;40977;40978;40979	40978					0.050296836775032716
KTKEVLQEW	9	Unmodified	_KTKEVLQEW_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	580.8189086914062	2	580.819138	1159.62372	-0.53576	-0.00031118	-0.049903	-2.8984E-05	-0.58566	-0.00034016	580.8190920764212	39.356	1.2453	39.13	38.806	40.051	-0.2257					87	32	4	0	0	0	0.012922	4	3323	3289;3299;3311;3323		185.72	0	1	6935500			35505	8217	24346	24398	40980;40981;40982;40983	40983					0.050296836775032716
KTKFHPYRNL	10	Unmodified	_KTKFHPYRNL_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.7569274902344	3	435.247173	1302.71969	0.24531	0.00010677	-3.6064	-0.0015697	-3.3611	-0.0014629	435.2455686470253	38.668	0.69665	38.443	38.143	38.839	-0.2257					52	18	4	0	0	0	0.03519	1	3262	3262		25.126	0	1	416850	+		35506	24288	24347	24399	40984	40984					0.0804387630828387
KTKFPAEQY	9	Unmodified	_KTKFPAEQY_					0	0	0		nc|ENSG00000211460|Q15631-2|TSN;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN;ENST00000490104.5_1_2:122514991-122522940:+|nuORF	nc|ENSG00000211460|Q15631-2|TSN	nc|ENSG00000211460|Q15631-2|TSN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.2925415039062	2	556.292756	1110.57096	-0.21073	-0.00011723	0.034367	1.9118E-05	-0.17636	-9.8109E-05	556.2926646702285	33.701	0.96073	33.47	32.916	33.876	-0.23107					63	23	4	0	0	0	0.013442	2	2412	2412;2423		185.72	74.07	1	3783200			35507	10478	24348	24400	40985;40986	40985					0.02009725614720992
KTKFPAEQY	9	Unmodified	_KTKFPAEQY_					0	0	0		nc|ENSG00000211460|Q15631-2|TSN;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN;ENST00000490104.5_1_2:122514991-122522940:+|nuORF	nc|ENSG00000211460|Q15631-2|TSN	nc|ENSG00000211460|Q15631-2|TSN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.2926635742188	2	556.292756	1110.57096	-0.40705	-0.00022644	0.093354	5.1932E-05	-0.3137	-0.00017451	556.29269717046	33.623	0.77542	33.423	33.056	33.831	-0.20019					59	19	5	0	0	0	0.014478	2	2410	2410;2423		164.46	62.854	1	4450100			35508	10478	24348	24400	40987;40988	40987					0.02009725614720992
KTKFPAEQY	9	Unmodified	_KTKFPAEQY_					0	0	0		nc|ENSG00000211460|Q15631-2|TSN;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN;ENST00000490104.5_1_2:122514991-122522940:+|nuORF	nc|ENSG00000211460|Q15631-2|TSN	nc|ENSG00000211460|Q15631-2|TSN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.2925415039062	2	556.292756	1110.57096	-1.3026	-0.00072461	0.92985	0.00051727	-0.37273	-0.00020735	556.2931626609453	33.601	1.061	33.435	33.117	34.178	-0.16565					55	20	4	0	0	0	0.015512	3	2392	2382;2392;2407		199.7	91.617	1	3846900			35509	10478	24348	24400	40989;40990;40991	40990					0.02009725614720992
KTKGFHTTI	9	Unmodified	_KTKGFHTTI_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.7952270507812	2	516.795466	1031.57638	-0.04694	-2.4258E-05	-0.74165	-0.00038328	-0.78859	-0.00040754	516.7950545575384	24.035	1.1245	23.82	23.51	24.635	-0.2151					71	25	5	0	0	0	0.03201	3	1012	1000;1012;1024		139.97	57.73	1	3548000			35510	3635	24349	24401	40992;40993;40994	40993					0.061854491971644165
KTKGFHTTI	9	Unmodified	_KTKGFHTTI_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7953491210938	2	516.795466	1031.57638	-0.085276	-4.4071E-05	-0.71453	-0.00036927	-0.79981	-0.00041334	516.7950934887192	23.896	0.94193	23.716	23.436	24.378	-0.17989					61	21	4	0	0	0	0.020687	2	987	976;987		148.99	50.357	1	4336200			35511	3635	24349	24401	40995;40996	40996					0.061854491971644165
KTKGFHTTI	9	Unmodified	_KTKGFHTTI_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.795166015625	2	516.795466	1031.57638	1.9634	0.0010147	-2.7529	-0.0014227	-0.78945	-0.00040799	516.7939903931272	23.918	1.0518	23.737	23.452	24.504	-0.18089					62	23	4	0	0	0	0.077175	3	969	957;969;983		118.74	46.866	1	4221500			35512	3635	24349	24401	40997;40998;40999	40998					0.061854491971644165
KTKGFIAR	8	Unmodified	_KTKGFIAR_					0	0	0			REV__nc|ENSG00000143156|Q9Y5B8-2|NME7	REV__nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2580261230469	2	460.787444	919.560336	-0.94146	-0.00043381	1.0969	0.00050543	0.15542	7.1616E-05	460.7876219655737	37.963	0.34544	37.741	37.613	37.959	-0.22149					12	9	2	0	0	0	0.027866	1	3073	3073		10.265	0	1	139900	+		35513	24204	24350	24402	41000	41000					0.09733787750928968
KTKIKLHL	8	Unmodified	_KTKIKLHL_					0	0	0			REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7952880859375	2	490.834394	979.654236	-0.44207	-0.00021699	0.14853	7.2904E-05	-0.29354	-0.00014408	490.8343770437598	48.827	0.46593	48.674	48.469	48.935	-0.15277					19	12	2	0	0	0	0.027866	1	4954	4954		23.042	12.777	1	113280	+		35514	30884	24351	24403	41001	41001					0.1635950685321177
KTKILSDSE	9	Unmodified	_KTKILSDSE_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7686462402344	2	510.782222	1019.54989	-0.10494	-5.3603E-05	-2.9466	-0.0015051	-3.0515	-0.0015587	510.78081375178095	58.429	0.48577	58.238	58.092	58.578	-0.19018					15	11	2	0	0	0	0.024397	1	6434	6434		18.262	0	1	180710			35515	9461	24352	24404	41002	41002					0.04089715515192438
KTKKFEEGE	9	Unmodified	_KTKKFEEGE_					0	0	0		nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3200073242188	2	548.287671	1094.56079	0.48912	0.00026818	-3.4854	-0.001911	-2.9963	-0.0016428	548.285459241751	19.129	0.34509	18.926	18.757	19.102	-0.20371					12	6	3	0	0	0	0.024511	1	377	377		40.778	5.1599	1	16318			35516	18139	24353	24405	41003	41003					0.017291178894765835
KTKKFEEGE	9	Unmodified	_KTKKFEEGE_					0	0	0		nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.287671	1094.56079	0.876	0.0004803	-3.3933	-0.0018605	-2.5173	-0.0013802	548.2856911145049	19.109	0.34535	19.109	18.922	19.268	0	0.067113	0.00044919	NaN	40.778	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18344			35517	18139	24353	24405							0.017291178894765835
KTKKFEEGE	9	Unmodified	_KTKKFEEGE_					0	0	0		nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.287671	1094.56079	-0.62454	-0.00034243	-2.1611	-0.0011849	-2.7856	-0.0015273	548.2864612820762	19.343	0.34512	19.224	19.003	19.348	-0.11872	0.18208	0.0018005	NaN	40.778	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19652			35518	18139	24353	24405							0.017291178894765835
KTKKFEEGE	9	Unmodified	_KTKKFEEGE_					0	0	0		nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-6|TSC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.287671	1094.56079	0.30889	0.00016936	-4.2311	-0.0023198	-3.9222	-0.0021505	548.2854417678446	19.071	0.24678	18.91	18.787	19.034	-0.16079	-0.13247	-0.00046946	NaN	40.778	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30853			35519	18139	24353	24405							0.017291178894765835
KTKKIKAFR	9	Unmodified	_KTKKIKAFR_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.323974609375	2	560.371675	1118.7288	0.19389	0.00010865	1.2774	0.00071579	1.4712	0.00082444	560.8736316636947	67.722	0.30209	67.722	67.606	67.908	0					11	7	2	0	0	0	0.024541	1	8123	8123		10.866	0	1	84235			35520	18490	24354	24406	41004	41004					0.17418269664608488
KTKKIKEKY	9	Unmodified	_KTKKIKEKY_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENST00000505987.1_1_4:88813329-88813827:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;nc|ENSG00000282100|Q58FF6|HSP90AB4P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.3704223632812	2	583.368798	1164.72304	1.2797	0.00074655	-1.2916	-0.00075345	-0.011833	-6.9032E-06	583.3679873680873	17.085	0.35254	16.931	16.756	17.108	-0.15403					13	6	3	0	0	0	0.6238	1	139	139		51.193	14.034	1	100850			35521	2049	24355	24407	41005	41005					0.14727126362276977
KTKKNFKL	8	Unmodified	_KTKKNFKL_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2478942871094	2	503.824027	1005.6335	-0.21413	-0.00010788	-0.76119	-0.00038351	-0.97532	-0.00049139	503.82354950281916	61.137	0.48641	61.208	60.79	61.276	0.071125					16	12	2	0	0	0	0.027866	1	6972	6972		63.306	5.495	1	104010	+		35522	20709	24356	24408	41006	41006					0.13090916473549896
KTKKNLKKFLT	11	Unmodified	_KTKKNLKKFLT_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000497103.1_1_10:32101629-32132466:-|nuORF	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2813415527344	3	450.294012	1347.86021	-0.66017	-0.00029727	3.0472	0.0013721	2.387	0.0010749	450.29541343517377	50.862	0.29552	50.949	50.82	51.116	0.087006					11	7	2	0	0	0	0.024869	1	5296	5296		8.0344	0	1	895560			35523	7398	24357	24409	41007	41007					0.20019035241807615
KTKKPIVVV	9	Unmodified	_KTKKPIVVV_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.K945Rfs*3|1|0.12|ENSG00000160007|chr19:46921503-46921503|A/-|frameshift_variant	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3196105957031	2	506.349877	1010.6852	-0.57137	-0.00028931	-0.45911	-0.00023247	-1.0305	-0.00052178	506.34942030525235	52.923	0.62944	52.923	52.673	53.302	0					41	16	3	0	0	0	0.024477	1	5690	5690		20.947	0	1	1236100			35524	6777	24358	24410	41008	41008					0.18028660167465205
KTKKSLESI	9	Unmodified	_KTKKSLESI_					0	0	0		ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.3162841796875	2	517.316232	1032.61791	0.23632	0.00012225	-0.82873	-0.00042872	-0.59241	-0.00030646	517.3157630726384	21.743	0.85583	21.566	21.303	22.158	-0.17721					50	17	4	0	0	0	0.041068	3	719	697;706;719		132.76	5.3742	1	1545200			35525	6533	24359	24411	41009;41010;41011	41011					0.10290585165853372
KTKKSLESI	9	Unmodified	_KTKKSLESI_					0	0	0		ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.3164672851562	2	517.316232	1032.61791	-0.13135	-6.7948E-05	-0.5097	-0.00026368	-0.64105	-0.00033162	517.3159253367573	21.877	0.81065	21.686	21.42	22.23	-0.19072					46	16	4	0	0	0	0.030064	3	717	706;717;731		141.52	0	1	1409000			35526	6533	24359	24411	41012;41013;41014	41013					0.10290585165853372
KTKKSLESI	9	Unmodified	_KTKKSLESI_					0	0	0		ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.3168334960938	2	517.316232	1032.61791	-0.69601	-0.00036005	0.029722	1.5376E-05	-0.66628	-0.00034468	517.3162076492945	21.84	0.77285	21.627	21.41	22.183	-0.2128					48	15	5	0	0	0	0.034407	3	682	682;693;706		138.06	15.558	1	1406500			35527	6533	24359	24411	41015;41016;41017	41015					0.10290585165853372
KTKLCLHR	8	Unmodified	_KTKLCLHR_					0	0	0		ENST00000430799.7_2_1:27107243-27107537:+|nuORF	ENST00000430799.7_2_1:27107243-27107537:+|nuORF	ENST00000430799.7_2_1:27107243-27107537:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7767333984375	2	499.800029	997.585505	-0.11499	-5.7474E-05	-3.8584	-0.0019284	-3.9734	-0.0019859	499.7980057362387	79.286	1.1279	79.286	78.993	80.12	0					44	26	3	0	0	0	0.027866	1	9881	9881		35.618	0	1	335830			35528	14177	24360	24412	41018	41018					0.08661519281861274
KTKLDRIEG	9	Unmodified	_KTKLDRIEG_					0	0	0			REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	530.31148	1058.60841	-0.33056	-0.0001753	2.6971	0.0014303	2.3666	0.001255	530.3140075507514	39.667	0.71181	39.667	39.425	40.137	0					21	19	2	0	0	0	0.024344	1	3471	3471		54.776	25.627	1	71351	+		35529	28143	24361	24413	41019	41019					0.08144816880326289
KTKLGGKAPLP	11	Unmodified	_KTKLGGKAPLP_					0	0	0		ENSG00000132016|ENST00000586783|BRME1;nc|ENSG00000132016|Q0VDD7-2|BRME1;ENST00000586500.1_1_19:13993617-13994323:-|nuORF	ENSG00000132016|ENST00000586783|BRME1	ENSG00000132016|ENST00000586783|BRME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.353515625	2	555.355691	1108.69683	0.40846	0.00022684	-4.2963	-0.002386	-3.8878	-0.0021591	555.353141892147	99.697	0.72572	99.692	99.254	99.98	-0.0050888					43	16	4	0	0	0	1.0292	1	12688	12688		30.318	1.1682	1	951200			35530	4570	24362	24414	41020	41020					0.14682857190791765
KTKLQIIP	8	Unmodified	_KTKLQIIP_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7723388671875	2	470.813128	939.611703	-0.19114	-8.999E-05	0.16008	7.5369E-05	-0.031054	-1.4621E-05	470.813056593332	40.331	0.57425	40.354	40.088	40.663	0.023006					36	15	3	0	0	0	0.027866	1	3487	3487		29.15	0	1	559360			35531	5951	24363	24415	41021	41021					0.13948111724982937
KTKLRQLL	8	Unmodified	_KTKLRQLL_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3136291503906	2	500.337301	998.66005	-0.47574	-0.00023803	-2.2234	-0.0011124	-2.6991	-0.0013505	500.33631194135233	76.447	0.43715	76.219	75.965	76.402	-0.22843					17	10	2	0	0	0	0.027866	1	9369	9369		40.573	1.7665	1	225400	+		35532	36627	24364	24416	41022	41022					0.1606660536488107
KTKLVSDS	8	Unmodified	_KTKLVSDS_					0	0	0			REV__ENST00000325870.2_1_9:22451315-22451384:+|nuORF	REV__ENST00000325870.2_1_9:22451315-22451384:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2523498535156	2	439.2531	876.491647	0.44278	0.00019449	-1.6924	-0.0007434	-1.2496	-0.00054891	439.25224259140566	90.069	0.98615	90.082	89.55	90.537	0.013443					57	23	4	0	0	0	1.0574	1	11297	11297		20.947	2.6225	1	2014300	+		35533	30395	24365	24417	41023	41023					0.048460786605687645
KTKMHGTAQS	10	Unmodified	_KTKMHGTAQS_					0	0	0			REV__ENST00000560148.5_2_15:74501815-74510888:+|nuORF	REV__ENST00000560148.5_2_15:74501815-74510888:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.8011474609375	2	544.77949	1087.54443	-1.0146	-0.00055272	1.5577	0.00084859	0.54309	0.00029586	544.7811770292486	45.129	0.36519	45.03	44.789	45.154	-0.099445					13	9	2	0	0	0	0.03519	1	4234	4234		38.754	8.4359	1	279170	+		35534	35138	24366	24418	41024	41024					0.00415713451729971
KTKNAQQVHF	10	Unmodified	_KTKNAQQVHF_					0	0	0		ENSG00000167967|ENST00000301727|E4F1	ENSG00000167967|ENST00000301727|E4F1	ENSG00000167967|ENST00000301727|E4F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.8879699707031	3	400.887645	1199.64111	1.0297	0.00041279	-0.82005	-0.00032875	0.20963	8.4039E-05	400.88722982005254	22.816	0.65215	22.627	22.281	22.933	-0.18894					38	13	4	0	0	0	0.75813	1	841	841		63.426	16.97	1	529730			35535	7755	24367	24419	41025	41025					0.049270240031546564
KTKNAQQVHF	10	Unmodified	_KTKNAQQVHF_					0	0	0		ENSG00000167967|ENST00000301727|E4F1	ENSG00000167967|ENST00000301727|E4F1	ENSG00000167967|ENST00000301727|E4F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.8877868652344	3	400.887645	1199.64111	0.68607	0.00027504	-0.56706	-0.00022733	0.11901	4.7712E-05	400.8873389849698	22.905	0.6909	22.719	22.46	23.151	-0.18539					35	14	3	0	0	0	0.811	1	847	847		59.931	10.395	1	601050			35536	7755	24367	24419	41026	41026					0.049270240031546564
KTKNAVEKF	9	Unmodified	_KTKNAVEKF_					0	0	0		CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.8084106445312	2	532.808574	1063.60259	-0.093217	-4.9667E-05	-0.026863	-1.4313E-05	-0.12008	-6.398E-05	532.8084160688858	20.641	0.63474	20.473	20.197	20.832	-0.16774					31	12	4	0	0	0	0.22902	1	576	576		85.161	19.695	1	357660			35537	464	24368	24420	41027	41027					0.07333718368636255
KTKNAVEKF	9	Unmodified	_KTKNAVEKF_					0	0	0		CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	532.808574	1063.60259	-0.79566	-0.00042393	0.62978	0.00033555	-0.16588	-8.8382E-05	532.8087685857755	20.763	0.49641	20.539	20.365	20.861	-0.22344	0.015719	0.00047148	NaN	85.161	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290550			35538	464	24368	24420							0.07333718368636255
KTKNVVPAR	9	Unmodified	_KTKNVVPAR_					0	0	0		chr18:31068603-31068894|137|23.5|0.41|5.84|-|2|None,DSC2|2	chr18:31068603-31068894|137|23.5|0.41|5.84|-|2|None,DSC2|2	chr18:31068603-31068894|137|23.5|0.41|5.84|-|2|None,DSC2|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.33135986328125	2	506.816733	1011.61891	-0.92863	-0.00047065	1.1325	0.00057396	0.20385	0.00010331	506.81706039103983	37.652	0.6348	37.579	37.082	37.716	-0.072422					30	17	3	0	0	0	0.024523	1	3061	3061		37.159	28.337	1	208440			35539	358	24369	24421	41028	41028					0.11356844325405291
KTKPKEHKEVK	11	Unmodified	_KTKPKEHKEVK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2454833984375	3	451.273388	1350.79833	-0.2356	-0.00010632	0.2239	0.00010104	-0.011692	-5.2765E-06	451.2731565390222	46.021	0.15252	45.76	45.701	45.854	-0.26118					5	3	2	0	0	0	0.024779	1	4409	4409		11.932	0	1	66356			35540	164	24370	24422	41029	41029					0.13696683822695377
KTKPREEQF	9	Unmodified	_KTKPREEQF_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.8140258789062	2	581.814387	1161.61422	-0.12601	-7.3316E-05	-0.5789	-0.00033681	-0.70491	-0.00041013	581.8141096877254	20.055	1.7869	19.888	19.62	21.407	-0.16774					92	36	6	0	0	0	0.01388	4	502	490;502;514;526		180.87	76.859	1	10142000			35541	18703	24371	24423	41030;41031;41032;41033	41031					0.039879153919855526
KTKPREEQF	9	Unmodified	_KTKPREEQF_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.8140869140625	2	581.814387	1161.61422	0.31491	0.00018322	-1.0048	-0.00058462	-0.68992	-0.00040141	581.8138731530718	20.16	1.5645	19.964	19.656	21.221	-0.19627					86	31	6	0	0	0	0.013924	5	501	489;501;513;527;540		167.23	65.628	1	8771600			35542	18703	24371	24423	41034;41035;41036;41037;41038	41035					0.039879153919855526
KTKPREEQF	9	Unmodified	_KTKPREEQF_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.81396484375	2	581.814387	1161.61422	-0.16121	-9.3794E-05	-0.50996	-0.0002967	-0.67117	-0.0003905	581.8141658034315	20.204	1.3783	19.981	19.68	21.058	-0.22344					82	27	6	0	0	0	0.048057	5	474	474;484;495;507;521		129.42	50.688	1	7618600			35543	18703	24371	24423	41039;41040;41041;41042;41043	41039					0.039879153919855526
KTKQAWNF	8	Unmodified	_KTKQAWNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.7734680175781	2	511.774534	1021.53451	0.20553	0.00010519	-0.32281	-0.00016521	-0.11728	-6.0023E-05	511.7742033119437	37.196	0.84597	37.003	36.697	37.543	-0.193					67	21	4	0	0	0	0.38451	1	2977	2977		99.375	25.4	1	1852100			35544	3189	24372	24424	41044	41044					0.024608935086462225
KTKQAWNF	8	Unmodified	_KTKQAWNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.77349853515625	2	511.774534	1021.53451	-0.84992	-0.00043497	0.48589	0.00024866	-0.36403	-0.0001863	511.7745905544782	37.133	0.82233	36.914	36.607	37.429	-0.2195					54	20	4	0	0	0	0.2677	2	2946	2946;2958		125.81	29.033	1	2073600			35545	3189	24372	24424	41045;41046	41045					0.024608935086462225
KTKQAWNF	8	Unmodified	_KTKQAWNF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7734680175781	2	511.774534	1021.53451	0.34268	0.00017538	-0.71083	-0.00036378	-0.36815	-0.00018841	511.7739820132845	37.071	1.2391	36.862	36.525	37.764	-0.2092					71	31	4	0	0	0	0.12938	2	2952	2935;2952		152.47	67.111	1	1792000			35546	3189	24372	24424	41047;41048	41048					0.024608935086462225
KTKRKVIKE	9	Unmodified	_KTKRKVIKE_					0	0	0		ENSG00000169607|ENST00000302450|CKAP2L;nc|ENSG00000169607|Q8IYA6-3|CKAP2L;ENST00000474331.1_1_2:113500160-113509996:-|nuORF;nc|ENSG00000169607|Q8IYA6-2|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.31396484375	2	565.374415	1128.73428	-1.1347	-0.00064152	3.4012	0.0019229	2.2665	0.0012814	565.3768617265719	36.523	0.10195	36.561	36.511	36.613	0.038044					4	2	2	0	0	0	0.024541	1	2848	2848		18.262	2.6203	1	63449			35547	7956	24373	24425	41049	41049					0.17505948456414444
KTKRLEAL	8	Unmodified	_KTKRLEAL_					0	0	0		ENST00000262738.7_1_22:46758356-46758458:-|nuORF	ENST00000262738.7_1_22:46758356-46758458:-|nuORF	ENST00000262738.7_1_22:46758356-46758458:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2772521972656	2	479.805834	957.597115	-0.18997	-9.1147E-05	0.16417	7.8768E-05	-0.025801	-1.2379E-05	479.8058734506686	21.518	0.28975	21.428	21.255	21.545	-0.090092					7	5	2	0	0	0	0.027866	1	646	646		60.972	11.53	1	20826			35548	11511	24374	24426	41050	41050					0.11662039576845018
KTKRLTVYSAI	11	Unmodified	_KTKRLTVYSAI_					0	0	0			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2645263671875	3	427.2626	1278.76597	0.50024	0.00021373	3.7573	0.0016053	4.2575	0.0018191	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.0746	1	5806	5806		18.332	0.86365	1	61030000	+		35549	20171	24375	24427	41051	41051					0.13773896419706944
KTKRSIQF	8	Unmodified	_KTKRSIQF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.3033447265625	2	504.303458	1006.59236	0.25829	0.00013026	0.058657	2.9581E-05	0.31695	0.00015984	504.3033645824667	23.584	1.1821	23.382	22.92	24.102	-0.20193					71	26	4	0	0	0	0.67154	1	980	980		69.628	3.1983	1	1644800			35550	3976	24376	24428	41052	41052					0.08933155434090168
KTKRSIQF	8	Unmodified	_KTKRSIQF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.3030700683594	2	504.303458	1006.59236	-0.38533	-0.00019433	0.85701	0.00043219	0.47168	0.00023787	504.30375170564406	23.516	0.89315	23.336	22.975	23.868	-0.17989					58	20	4	0	0	0	0.29644	1	961	961		113.41	22.635	1	2025300			35551	3976	24376	24428	41053	41053					0.08933155434090168
KTKRSIQF	8	Unmodified	_KTKRSIQF_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.3038024902344	2	504.303458	1006.59236	1.5424	0.00077783	-1.2736	-0.00064227	0.2688	0.00013555	504.3026619777072	23.497	1.1647	23.306	22.897	24.061	-0.19117					64	26	4	0	0	0	0.53593	2	917	917;930		82.241	30.905	1	2165200			35552	3976	24376	24428	41054;41055	41054					0.08933155434090168
KTKSDRFVW	9	Unmodified	_KTKSDRFVW_					0	0	0		ENST00000355105.7_1_1:46126867-46151259:-|nuORF	ENST00000355105.7_1_1:46126867-46151259:-|nuORF	ENST00000355105.7_1_1:46126867-46151259:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.3031616210938	2	583.819473	1165.62439	-0.66846	-0.00039026	2.4677	0.0014407	1.7992	0.0010504	583.8210042794586	64.85	0.19491	64.615	64.452	64.647	-0.2345					6	4	2	0	0	0	0.024427	1	7387	7387		26.693	0	1	99792			35553	12639	24377	24429	41056	41056					0.04820523117223274
KTKSGRID	8	Unmodified	_KTKSGRID_					0	0	0		ENST00000461006.5_1_1:32096163-32098865:-|nuORF;ENSG00000162517|ENST00000373703|PEF1	ENST00000461006.5_1_1:32096163-32098865:-|nuORF	ENST00000461006.5_1_1:32096163-32098865:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2423095703125	2	452.764166	903.513779	-0.10543	-4.7736E-05	0.60073	0.00027199	0.49529	0.00022425	452.7648279661208	54.098	0.29307	53.852	53.687	53.98	-0.2453					12	9	2	0	0	0	0.027866	1	5728	5728		23.042	6.5693	1	176640			35554	6949	24378	24430	41057	41057					0.05816303128983691
KTKSIAEEL	9	Unmodified	_KTKSIAEEL_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.8088073730469	2	509.792589	1017.57063	-0.58699	-0.00029925	-3.6879	-0.0018801	-4.2749	-0.0021793	509.7923439607023	29.094	0.38855	28.921	28.681	29.07	-0.17258					19	8	3	0	0	0	0.024397	1	1758	1758		39.253	0	1	74525			35555	3729	24379	24431	41058	41058					0.06254305894833578
KTKSKIPPI	9	Unmodified	_KTKSKIPPI_					0	0	0		ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2972106933594	2	506.331685	1010.64882	-0.024302	-1.2305E-05	-0.026425	-1.338E-05	-0.050727	-2.5685E-05	506.3314897402033	58.06	0.47202	58.06	57.946	58.418	0					16	12	2	0	0	0	0.024523	1	6621	6621		21.96	3.6355	1	324770			35556	15020	24380	24432	41059	41059					0.14391783270752967
KTKSKIPPI	9	Unmodified	_KTKSKIPPI_					0	0	0		ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.331685	1010.64882	-0.86614	-0.00043855	0.79586	0.00040297	-0.070276	-3.5583E-05	506.33196973723307	58.362	0.39354	58.175	57.993	58.386	-0.18705	0.06084	0.00064866	NaN	27.882	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302940			35557	15020	24380	24432							0.14391783270752967
KTKSKIPPI	9	Unmodified	_KTKSKIPPI_					0	0	0		ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.331685	1010.64882	0.0014939	7.564E-07	-0.69047	-0.00034961	-0.68898	-0.00034885	506.33111997532524	58.288	0.25927	58.111	58.017	58.276	-0.17775	-0.0038587	-0.0008565	NaN	27.882	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252420			35558	15020	24380	24432							0.14391783270752967
KTKSKIPPI	9	Unmodified	_KTKSKIPPI_					0	0	0		ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	ENST00000473999.2_1_12:124832131-124832948:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.331685	1010.64882	0.25212	0.00012766	-0.13647	-6.9097E-05	0.11565	5.8559E-05	506.3314558820404	58.377	0.42068	58.135	58.001	58.422	-0.24165	0.020989	-0.00029547	NaN	27.882	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260010			35559	15020	24380	24432							0.14391783270752967
KTKSLAQQL	9	Unmodified	_KTKSLAQQL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8085632324219	2	508.808574	1015.60259	-1.1139	-0.00056677	0.79497	0.00040449	-0.31895	-0.00016228	508.80892461335	29.225	0.69212	28.98	28.665	29.357	-0.24524					52	15	5	0	0	0	0.086035	1	1766	1766		115.49	22.351	1	1115700			35560	1210	24381	24433	41060	41060					0.09541718368643615
KTKSLAQQL	9	Unmodified	_KTKSLAQQL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.80828857421875	2	508.808574	1015.60259	-0.58446	-0.00029738	0.19385	9.8632E-05	-0.39061	-0.00019874	508.8086121701511	29.074	0.89566	28.902	28.594	29.49	-0.17258					57	20	5	0	0	0	0.1158	1	1746	1746		107.01	13.864	1	1205700			35561	1210	24381	24433	41061	41061					0.09541718368643615
KTKSLAQQL	9	Unmodified	_KTKSLAQQL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.80804443359375	2	508.808574	1015.60259	-0.46104	-0.00023458	-0.13664	-6.9524E-05	-0.59768	-0.0003041	508.8084569479385	29.073	0.80201	28.923	28.657	29.459	-0.14952					52	18	5	0	0	0	0.057894	2	1723	1723;1733		125.81	29.999	1	1354700			35562	1210	24381	24433	41062;41063	41062					0.09541718368643615
KTKSNMKGF	9	Oxidation (M)	_KTKSNM(Oxidation (M))KGF_		KTKSNM(1)KGF		KTKSNM(55)KGF	0	0	1		ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	ENSG00000113712|ENST00000377843|CSNK1A1	ENSG00000113712|ENST00000377843|CSNK1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.778076171875	2	528.778959	1055.54336	-0.49082	-0.00025953	0.33965	0.0001796	-0.15117	-7.9936E-05	528.7790140501899	17.144	0.35291	16.936	16.762	17.115	-0.20777					10	6	2	0	0	0	0.56934	1	138	138		54.776	8.8244	1	133080			35563	3319	24382	24434	41064	41064		125			0.017814990828355803
KTKTEREV	8	Unmodified	_KTKTEREV_					0	0	0			REV__ENSG00000088038|ENST00000221232|CNOT3	REV__ENSG00000088038|ENST00000221232|CNOT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.78118896484375	2	495.782556	989.550559	-0.36263	-0.00017979	-2.7446	-0.0013607	-3.1072	-0.0015405	495.7811327557606	27.977	1.774	28.058	27.208	28.982	0.081293					74	44	2	0	0	0	0.91956	1	1535	1535		49.442	1.5259	1	1781800	+		35564	20806	24383	24435	41065	41065					0.05536554954892381
KTKTHARR	8	Unmodified	_KTKTHARR_					0	0	0			REV__ENSG00000183647|ENST00000597700|ZNF530	REV__ENSG00000183647|ENST00000597700|ZNF530	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2183837890625	2	499.304324	996.594095	-0.62231	-0.00031072	1.94	0.00096865	1.3177	0.00065793	499.3049814828375	32.179	0.3429	32.021	31.861	32.204	-0.15772					10	7	2	0	0	0	0.027866	1	2194	2194		32.812	0	1	95582	+		35565	27593	24384	24436	41066	41066					0.09566209242700552
KTKTIEEVY	9	Unmodified	_KTKTIEEVY_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.805908203125	2	555.805697	1109.59684	-0.30207	-0.00016789	-0.18133	-0.00010079	-0.4834	-0.00026867	555.8055564948145	33.209	0.77005	32.978	32.627	33.397	-0.23107					50	18	4	0	0	0	0.57016	2	2348	2348;2366		54.722	5.2808	1	1485700			35566	10036	24385	24437	41067;41068	41067					0.04642575066327481
KTKTIEEVY	9	Unmodified	_KTKTIEEVY_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.8058471679688	2	555.805697	1109.59684	-0.16742	-9.3055E-05	-0.29088	-0.00016167	-0.4583	-0.00025473	555.8053963847439	33.242	0.63475	33.042	32.73	33.365	-0.20019					43	15	4	0	0	0	0.2101	1	2358	2358		87.696	28.914	1	1641800			35567	10036	24385	24437	41069	41069					0.04642575066327481
KTKTIEEVY	9	Unmodified	_KTKTIEEVY_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.8057861328125	2	555.805697	1109.59684	-0.83701	-0.00046522	0.25116	0.0001396	-0.58585	-0.00032562	555.8058197424236	33.131	0.76265	32.965	32.516	33.278	-0.16565					51	18	4	0	0	0	0.37611	1	2323	2323		67.494	18.052	1	1409300			35568	10036	24385	24437	41070	41070					0.04642575066327481
KTKTIELIEF	10	Unmodified	_KTKTIELIEF_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3544921875	2	611.358096	1220.70164	-0.81331	-0.00049722	-2.409	-0.0014728	-3.2224	-0.00197	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.1265	1	12116	12116		24.519	0.99649	1	11166000			35569	917	24386	24438	41071	41071					0.10011696542892423
KTKTIELIEF	10	Unmodified	_KTKTIELIEF_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3563232421875	2	611.358096	1220.70164	-1.352	-0.00082658	-1.8159	-0.0011102	-3.168	-0.0019368	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.1088	1	12004	12004		31.53	4.8369	1	11699000			35570	917	24386	24438	41072	41072					0.10011696542892423
KTKTKTKAK	9	Unmodified	_KTKTKTKAK_					0	0	0		ENST00000448942.5_1_6:138178656-138178794:-|nuORF	ENST00000448942.5_1_6:138178656-138178794:-|nuORF	ENST00000448942.5_1_6:138178656-138178794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7813110351562	2	517.340041	1032.66553	-0.075716	-3.9171E-05	3.3574	0.0017369	3.2817	0.0016977	517.341940843114	42.073	0.33137	42.073	41.856	42.187	0					18	9	3	0	0	0	0.024527	1	3838	3838		24.519	4.5224	1	177630			35571	14491	24387	24439	41073	41073					0.15050284156677662
KTKTVQQKV	9	Unmodified	_KTKTVQQKV_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.P578Hfs*4|1|0.11|ENSG00000133858|chr12:71637052-71637053|-/GT|frameshift_variant;ZFC3H1|p.P578Kfs*5|1|0.1|ENSG00000133858|chr12:71637054-71637055|-/TCTTG|frameshift_variant	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3218383789062	2	530.329673	1058.64479	-0.47184	-0.00025023	-2.4803	-0.0013154	-2.9522	-0.0015656	530.3284135030254	67.578	0.31545	67.578	67.367	67.682	0					10	7	2	0	0	0	0.024466	1	8042	8042		12.812	4.118	1	191960			35572	4735	24388	24440	41074	41074					0.11781693777038527
KTKVNKHAF	9	Unmodified	_KTKVNKHAF_					0	0	0		ENST00000557614.1_1_14:100803287-100808848:-|nuORF;nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3353881835938	2	536.816733	1071.61891	-0.38196	-0.00020504	-0.30559	-0.00016405	-0.68755	-0.00036909	536.8167691603664	18.091	0.39641	17.884	17.714	18.11	-0.20669					23	7	5	0	0	0	0.024025	1	252	252		52.937	12.159	1	234390			35573	5393	24389	24441	41075	41075					0.08596844325415987
KTKVNKHAF	9	Unmodified	_KTKVNKHAF_					0	0	0		ENST00000557614.1_1_14:100803287-100808848:-|nuORF;nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.816733	1071.61891	0.7146	0.00038361	-1.5429	-0.00082826	-0.82831	-0.00044465	536.8162651927801	18.036	0.4439	17.88	17.655	18.099	-0.15637	0.0085941	9.9497E-05	NaN	52.937	30	8	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249130			35574	5393	24389	24441							0.08596844325415987
KTKVRVSR	8	Unmodified	_KTKVRVSR_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.3003234863281	2	487.3169	972.619247	-0.67667	-0.00032975	-1.6821	-0.00081973	-2.3588	-0.0011495	487.3164375747545	58.017	0.42554	58.108	57.908	58.333	0.091217					22	11	3	0	0	0	0.027866	1	6482	6482		12.207	0	1	445210	+		35575	23682	24390	24442	41076	41076					0.13184264045275995
KTKVVWLVS	9	Unmodified	_KTKVVWLVS_					0	0	0		ENSG00000038210|ENST00000264864|PI4K2B	ENSG00000038210|ENST00000264864|PI4K2B	ENSG00000038210|ENST00000264864|PI4K2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	530.331685	1058.64882	-0.33615	-0.00017827	1.3364	0.00070874	1.0003	0.00053047	530.3329212653399	39.752	0.3238	39.752	39.627	39.951	0					9	8	2	0	0	0	0.024447	1	3471	3471		40.778	15.328	1	116740			35576	1050	24391	24443	41077	41077					0.12183783270734239
KTKWDLIN	8	Unmodified	_KTKWDLIN_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	509.290017	1016.56548	0.0056186	2.8615E-06	2.9803	0.0015179	2.986	0.0015207	509.29116447465753	65.531	0.62079	65.531	65.292	65.913	0					37	16	3	0	0	0	0.027866	1	7788	7788		73.975	2.679	1	325700	+		35577	23653	24392	24444	41078	41078					0.05786046822879598
KTKYFIKEG	9	Unmodified	_KTKYFIKEG_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11;OSBPL11|p.D728G|1|0.3|ENSG00000144909|chr3:125530576-125530576|T/C|missense_variant	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.263427734375	2	557.318774	1112.623	-1.207	-0.00067268	0.19338	0.00010777	-1.0136	-0.00056491	557.8211371368635	44.455	0.71953	44.236	43.826	44.546	-0.21939					36	19	3	0	0	0	0.024418	1	4185	4185		45.972	0	1	338930			35578	5783	24393	24445	41079	41079					0.07118889028447484
KTLAEINQKW	10	Unmodified	_KTLAEINQKW_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.2135314941406	3	410.89955	1229.67682	-0.61558	-0.00025294	0.47198	0.00019394	-0.1436	-5.9003E-05	410.89970522296255	44.583	0.74931	44.338	44.045	44.795	-0.2444					53	19	4	0	0	0	0.03519	1	4170	4170		55.084	36.553	1	1170700			35579	5233	24394	24446	41080	41080					0.07117061460189689
KTLAEINQKW	10	Unmodified	_KTLAEINQKW_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.21356201171875	3	410.89955	1229.67682	-0.90886	-0.00037345	0.76364	0.00031378	-0.14522	-5.967E-05	410.8998180419868	44.566	0.56065	44.355	44.116	44.677	-0.21109					42	14	4	0	0	0	0.03519	1	4159	4159		60.167	37.386	1	1218300			35580	5233	24394	24446	41081	41081					0.07117061460189689
KTLAIHVK	8	Unmodified	_KTLAIHVK_					0	0	0		nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.75872802734375	2	455.297645	908.580737	-0.35118	-0.00015989	0.37238	0.00016955	0.021207	9.6555E-06	455.2975645544483	23.4	0.67804	23.22	22.929	23.607	-0.17989					28	15	3	0	0	0	0.027866	1	924	924		3.41	0	1	251720			35581	4203	24395	24447	41082	41082					0.1227895841074087
KTLCLKKCFK	10	Unmodified	_KTLCLKKCFK_					0	0	0		ENST00000556380.3_1_14:35480803-35482576:+|nuORF	ENST00000556380.3_1_14:35480803-35482576:+|nuORF	ENST00000556380.3_1_14:35480803-35482576:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.57196044921875	3	404.571612	1210.69301	0.65152	0.00026359	-0.0060237	-2.437E-06	0.64549	0.00026115	404.5715469077739	20.83	0.91981	20.663	20.345	21.265	-0.16774					59	18	5	0	0	0	1.1081	1	595	595		31.634	3.5528	1	911560			35582	16707	24396	24448	41083	41083					0.0960872810105684
KTLEFELEA	9	Unmodified	_KTLEFELEA_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;ITSN1|p.P715Sfs*27|1|0.06|ENSG00000205726|chr21:33797568-33797569|-/AG|frameshift_variant	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2840576171875	2	540.284597	1078.55464	-0.41396	-0.00022366	0.5323	0.0002876	0.11834	6.3939E-05	540.2847832250313	89.163	1.2041	89.179	88.88	90.084	0.015907					59	28	3	0	0	0	0.40693	1	11174	11174		65.465	1.2581	1	1477800			35583	10440	24397	24449	41084	41084					0.018505996579506245
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1	ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.2642517089844	2	505.263665	1008.51278	-0.51863	-0.00026205	0.16427	8.3001E-05	-0.35436	-0.00017905	505.2636171112803	52.948	1.0901	52.948	52.673	53.763	0					74	29	4	0	0	0	0.016542	1	5687	5687		154.12	60.923	1	5444900			35584	10694	24398	24450	41085	41085					0.008860439694444722
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1	ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.2636413574219	2	505.263665	1008.51278	-0.42802	-0.00021626	0.15803	7.9845E-05	-0.27	-0.00013642	505.26366095998475	53.039	1.0706	52.892	52.569	53.639	-0.14723					78	28	5	0	0	0	0.016542	1	5679	5679		154.12	77.272	1	5391400			35585	10694	24398	24450	41086	41086					0.008860439694444722
KTLEGEFSV	9	Unmodified	_KTLEGEFSV_					0	0	0		ENSG00000230797|ENST00000429584|YY2;ENSG00000100811|ENST00000262238|YY1	ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.2642822265625	2	505.263665	1008.51278	0.088936	4.4936E-05	-0.33039	-0.00016694	-0.24146	-0.000122	505.2633504209201	52.78	1.135	52.872	52.526	53.661	0.091942					79	30	4	0	0	0	0.048057	1	5591	5591		129.42	39.051	1	5593400			35586	10694	24398	24450	41087	41087					0.008860439694444722
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.8297119140625	2	561.829506	1121.64446	-0.54908	-0.00030849	-1.1144	-0.00062608	-1.6635	-0.00093458	561.8291607173754	43.704	1.1655	43.599	42.899	44.064	-0.10468					105	31	5	0	0	0	0.087669	3	4026	4016;4026;4038		114.89	41.985	1	5205400			35587	7673	24399	24451	41088;41089;41090	41089					0.08850274057181196
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.8289794921875	2	561.829506	1121.64446	-0.91461	-0.00051386	-0.2572	-0.0001445	-1.1718	-0.00065836	561.8293063994374	43.857	0.91068	43.612	43.31	44.22	-0.2444					44	24	2	0	0	0	0.071379	2	4037	4037;4049		120.87	40.414	1	4769100			35588	7673	24399	24451	41091;41092	41091					0.08850274057181196
KTLERSYLL	9	Unmodified	_KTLERSYLL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.8291625976562	2	561.829506	1121.64446	-1.1146	-0.00062624	-0.7608	-0.00042744	-1.8755	-0.0010537	561.8293895249965	43.885	1.1889	43.665	42.919	44.108	-0.21939					104	32	5	0	0	0	0.12914	3	4043	4033;4043;4055		104.06	24.606	1	5322100			35589	7673	24399	24451	41093;41094;41095	41094					0.08850274057181196
KTLFEIVFQLL	11	Unmodified	_KTLFEIVFQLL_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2540588378906	3	450.939235	1349.79587	-0.44678	-0.00020147	-4.4748	-0.0020178	-4.9215	-0.0022193	450.9371298067341	36.407	0.70833	36.364	36.101	36.81	-0.042454					45	18	3	0	0	0	0.02473	1	2921	2921		33.039	27.341	1	274440			35590	1432	24400	24452	41096	41096					0.13496835365049265
KTLFEIVFQLL	11	Unmodified	_KTLFEIVFQLL_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	450.939235	1349.79587	0.09175	4.1374E-05	-5.2614	-0.0023726	-5.1697	-0.0023312	450.93680595616206	36.503	0.62421	36.503	36.263	36.887	0	-0.036296	-0.00060992	NaN	33.039	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305890			35591	1432	24400	24452							0.13496835365049265
KTLFSSPLF	9	Unmodified	_KTLFSSPLF_					0	0	0			REV__ENST00000352456.7_1_19:41812678-41812759:+|nuORF	REV__ENST00000352456.7_1_19:41812678-41812759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.8572998046875	2	520.294768	1038.57498	0.054387	2.8297E-05	2.9849	0.001553	3.0393	0.0015813	520.2960017494825	75.753	0.61416	75.764	75.401	76.015	0.011635					40	16	3	0	0	0	0.024319	1	9260	9260		56.721	1.9447	1	464890	+		35592	30739	24401	24453	41097	41097					0.05723815108422059
KTLGGYSW	8	Unmodified	_KTLGGYSW_					0	0	0		ENST00000591443.1_1_19:19230741-19231736:-|nuORF;ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.2342224121094	2	456.23471	910.454868	0.69641	0.00031773	-0.74425	-0.00033955	-0.047846	-2.1829E-05	456.23420261279665	50.922	0.98621	50.81	50.525	51.511	-0.11163					54	25	3	0	0	0	0.34573	1	5204	5204		104.75	27.429	1	1553800			35593	1274	24402	24454	41098	41098					-0.003941731653412717
KTLGGYSW	8	Unmodified	_KTLGGYSW_					0	0	0		ENST00000591443.1_1_19:19230741-19231736:-|nuORF;ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2341003417969	2	456.23471	910.454868	-0.018882	-8.6148E-06	-0.028271	-1.2898E-05	-0.047153	-2.1513E-05	456.2345088389991	51.251	0.83957	50.975	50.627	51.467	-0.27643					53	21	4	0	0	0	0.2677	2	5249	5239;5249		125.81	52.935	1	1552400			35594	1274	24402	24454	41099;41100	41100					-0.003941731653412717
KTLGGYSW	8	Unmodified	_KTLGGYSW_					0	0	0		ENST00000591443.1_1_19:19230741-19231736:-|nuORF;ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.23471	910.454868	0.72409	0.00033036	-0.79337	-0.00036196	-0.069278	-3.1607E-05	456.23421077462467	50.984	0.80619	50.804	50.534	51.34	-0.18071	-0.059223	-0.00024141	NaN	125.81	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1589500			35595	1274	24402	24454							-0.003941731653412717
KTLGLRVVCV	10	Unmodified	_KTLGLRVVCV_					0	0	0		ENST00000509178.5_1_5:134117763-134126202:+|nuORF;nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	ENST00000509178.5_1_5:134117763-134126202:+|nuORF	ENST00000509178.5_1_5:134117763-134126202:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.32177734375	2	544.336444	1086.65834	-0.34554	-0.00018809	2.1377	0.0011636	1.7921	0.00097553	544.3374774486617	24.317	0.33338	24.142	23.963	24.296	-0.17484					13	7	2	0	0	0	0.03519	1	1031	1031		2.7184	0	1	41711			35596	5841	24403	24455	41101	41101					0.11847228284614175
KTLHDTRTHF	10	Unmodified	_KTLHDTRTHF_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	419.2227478027344	3	419.222916	1254.64692	0.32424	0.00013593	-0.45301	-0.00018991	-0.12877	-5.3984E-05	419.22260878148376	22.5	0.59838	22.311	22.102	22.7	-0.18894					38	12	4	0	0	0	0.78327	1	818	818		61.765	19.426	1	449720			35597	1335	24404	24456	41102	41102					0.029781225148326484
KTLHDTRTHF	10	Unmodified	_KTLHDTRTHF_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	419.222916	1254.64692	-0.48399	-0.0002029	0.32861	0.00013776	-0.15538	-6.5137E-05	419.2229944465446	22.716	0.45675	22.531	22.281	22.738	-0.18539	0.087445	0.00056693	NaN	61.765	25	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459770			35598	1335	24404	24456							0.029781225148326484
KTLHDTRTHF	10	Unmodified	_KTLHDTRTHF_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	419.222916	1254.64692	0.95779	0.00040153	-1.0508	-0.0004405	-0.092959	-3.897E-05	419.2223705367665	22.69	0.50805	22.488	22.285	22.793	-0.20199	0.044725	-0.0011679	NaN	61.765	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430620			35599	1335	24404	24456							0.029781225148326484
KTLHILFAL	9	Unmodified	_KTLHILFAL_					0	0	0		ENST00000366658.6_1_1:231115021-231125890:+|nuORF	ENST00000366658.6_1_1:231115021-231125890:+|nuORF	ENST00000366658.6_1_1:231115021-231125890:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2737426757812	2	528.334227	1054.6539	-1.3926	-0.00073577	-0.090328	-4.7723E-05	-1.4829	-0.00078349	528.3340398373339	92.009	0.493	92.009	91.685	92.178	0					18	11	3	0	0	0	0.024294	1	11660	11660		21.96	0	1	158140			35600	12822	24405	24457	41103	41103					0.12876087133372494
KTLHKKAFY	9	Unmodified	_KTLHKKAFY_					0	0	0		ENST00000439704.1_1_7:63369621-63370485:-|nuORF	ENST00000439704.1_1_7:63369621-63370485:-|nuORF	ENST00000439704.1_1_7:63369621-63370485:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2318725585938	2	568.334759	1134.65496	0.45613	0.00025923	2.5101	0.0014266	2.9662	0.0016858	568.8386973451948	76.997	0.42631	76.729	76.38	76.807	-0.26806					6	4	2	0	0	0	0.024506	1	9117	9117		23.042	0	1	92843			35601	14337	24406	24458	41104	41104					0.09302301502270893
KTLIEFQN	8	Unmodified	_KTLIEFQN_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.3129577636719	2	496.7742	991.533846	-0.40345	-0.00020043	0.65726	0.00032651	0.2538	0.00012608	496.77425843176366	73.39	0.63741	73.113	72.884	73.522	-0.2769					34	15	3	0	0	0	0.027866	1	8679	8679		35.618	0	1	824400			35602	3753	24407	24459	41105	41105					0.037740540689469526
KTLKKAKSL	9	Unmodified	_KTLKKAKSL_					0	0	0		nc|ENSG00000105792|A5D8W1-2|CFAP69;nc|ENSG00000105792|A5D8W1-5|CFAP69;ENSG00000105792|ENST00000389297|CFAP69	nc|ENSG00000105792|A5D8W1-2|CFAP69	nc|ENSG00000105792|A5D8W1-2|CFAP69	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7931213378906	2	508.844959	1015.67537	1.3971	0.00071091	-1.2792	-0.00065089	0.11794	6.0015E-05	508.8441234620739	17.237	0.35235	17.083	16.907	17.259	-0.15403					12	6	3	0	0	0	0.024541	1	154	154		6.3127	3.1534	1	134900			35603	2723	24408	24460	41106	41106					0.16815472162090828
KTLKLVVK	8	Unmodified	_KTLKLVVK_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.81304931640625	2	464.83132	927.648088	-0.70334	-0.00032694	-3.1307	-0.0014552	-3.834	-0.0017822	464.8299228389128	38.246	0.1251	38.028	37.957	38.083	-0.21848					5	3	2	0	0	0	0.027866	1	3119	3119		3.9852	0	1	104180			35604	5922	24409	24461	41107	41107					0.18136988621699857
KTLKNVKEI	9	Unmodified	_KTLKNVKEI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7981567382812	2	536.839874	1071.66519	-0.57166	-0.00030689	-3.8557	-0.0020699	-4.4273	-0.0023768	536.838061947642	66.153	0.42239	65.88	65.72	66.142	-0.27282					14	10	2	0	0	0	0.022882	1	7859	7859		75.043	10.836	1	115700	+		35605	23178	24410	24462	41108	41108					0.13222864436852433
KTLKPKNPY	9	Unmodified	_KTLKPKNPY_					0	0	0			REV__ENST00000539906.5_2_12:69082787-69085752:+|nuORF	REV__ENST00000539906.5_2_12:69082787-69085752:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8038330078125	2	544.826766	1087.63898	0.11075	6.0338E-05	-4.124	-0.0022469	-4.0132	-0.0021865	544.8244801713705	21.672	0.57202	21.495	21.256	21.828	-0.17721					18	11	2	0	0	0	0.024539	1	716	716		27.882	3.6795	1	31395	+		35606	34739	24411	24463	41109	41109					0.09866595265361866
KTLKPTDRP	9	Unmodified	_KTLKPTDRP_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2577514648438	2	528.314023	1054.61349	-1.2597	-0.00066549	0.75268	0.00039765	-0.50698	-0.00026784	528.3142224593917	44.863	0.62153	44.715	44.422	45.044	-0.1488					49	17	4	0	0	0	0.024541	1	4270	4270		9.1829	0.48922	1	2960300			35607	9950	24412	24464	41110	41110					0.08837120742964544
KTLLAAYEE	9	Unmodified	_KTLLAAYEE_					0	0	0			REV__ENSG00000153406|ENST00000283429|NMRAL1	REV__ENSG00000153406|ENST00000283429|NMRAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2689208984375	2	519.279315	1036.54408	-0.71332	-0.00037041	0.068147	3.5387E-05	-0.64517	-0.00033502	519.2791616467115	74.712	0.61072	74.723	74.481	75.092	0.010376					21	14	2	0	0	0	0.024209	1	9123	9123		66.429	0	1	166490	+		35608	24903	24413	24465	41111	41111					0.027266170035318282
KTLLAAYEE	9	Unmodified	_KTLLAAYEE_					0	0	0			REV__ENSG00000153406|ENST00000283429|NMRAL1	REV__ENSG00000153406|ENST00000283429|NMRAL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.279315	1036.54408	0.083821	4.3527E-05	-3.7435	-0.0019439	-3.6597	-0.0019004	519.2764899265615	74.898	0.86856	74.639	74.114	74.983	-0.25887	-0.041756	-0.0029447	NaN	66.429	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209580	+		35609	24903	24413	24465							0.027266170035318282
KTLLADDI	8	Unmodified	_KTLLADDI_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.7386169433594	2	444.755475	887.496398	-0.93478	-0.00041575	1.8505	0.00082301	0.9157	0.00040726	444.7560224955031	65.079	0.42379	65.079	64.836	65.26	0					15	11	2	0	0	0	0.027866	1	7718	7718		37.159	11.709	1	97951	+		35610	20124	24414	24466	41112	41112					0.04814962803322942
KTLLADDI	8	Unmodified	_KTLLADDI_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	444.755475	887.496398	-0.86496	-0.0003847	-2.1232	-0.00094429	-2.9881	-0.001329	444.7559707071953	65.152	1.1562	64.889	64.083	65.239	-0.2626	-0.12406	-0.0019808	NaN	37.159	41	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95402	+		35611	20124	24414	24466							0.04814962803322942
KTLLADDI	8	Unmodified	_KTLLADDI_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	444.755475	887.496398	-0.31477	-0.00013999	-0.48401	-0.00021527	-0.79878	-0.00035526	444.75555169190494	65.034	0.5039	65.072	64.817	65.321	0.037384	0.058519	-0.00052278	NaN	37.159	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152410	+		35612	20124	24414	24466							0.04814962803322942
KTLLEKRVD	9	Unmodified	_KTLLEKRVD_					0	0	0			REV__ENSG00000166183|ENST00000551177|ASPG	REV__ENSG00000166183|ENST00000551177|ASPG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.3340454101562	2	551.334956	1100.65536	3.2916	0.0018148	-3.3894	-0.0018687	-0.097822	-5.3932E-05	551.3330451443206	17.509	0.39687	17.509	17.3	17.697	0					18	7	3	0	0	0	0.97973	1	186	186		24.519	0.31644	1	145650	+		35613	25988	24415	24467	41113	41113					0.1090567643148006
KTLLGEISEY	10	Unmodified	_KTLLGEISEY_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.7817993164062	2	576.810979	1151.6074	-0.17937	-0.00010346	-0.010805	-6.2326E-06	-0.19017	-0.00010969	576.8108163214075	65.901	0.57327	65.66	65.414	65.988	-0.24145					19	13	2	0	0	0	0.03519	1	7505	7505		30.318	6.795	1	121670			35614	6043	24416	24468	41114	41114					0.037665577207462775
KTLLICFW	8	Unmodified	_KTLLICFW_					0	0	0		ENST00000428210.5_1_2:61706049-61706091:-|nuORF	ENST00000428210.5_1_2:61706049-61706091:-|nuORF	ENST00000428210.5_1_2:61706049-61706091:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2860107421875	2	512.288431	1022.56231	-0.535	-0.00027408	-4.1381	-0.0021199	-4.6731	-0.002394	512.2863398371915	67.027	0.72693	66.803	66.67	67.397	-0.22374					38	18	3	0	0	0	1.0472	1	7716	7716		29.842	0.69198	1	800370			35615	14127	24417	24469	41115	41115					0.05193080444530551
KTLLLKER	8	Unmodified	_KTLLLKER_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8005676269531	2	500.829309	999.644065	-0.045307	-2.2691E-05	0.061537	3.0819E-05	0.01623	8.1283E-06	500.82918675970194	46.603	0.57919	46.654	46.408	46.987	0.051399					29	15	2	0	0	0	0.027866	1	4589	4589		27.882	0	1	633400			35616	3254	24418	24470	41116	41116					0.1442289912798742
KTLLRRHLAT	10	Unmodified	_KTLLRRHLAT_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.592529296875	3	403.591051	1207.75132	0.067704	2.7325E-05	3.1103	0.0012553	3.178	0.0012826	403.59230002804907	38.13	1.7655	37.908	37.309	39.074	-0.22149					113	41	4	0	0	0	1.1311	1	3125	3125		28.577	6.891	1	8888900			35617	3066	24419	24471	41117	41117					0.15575869062217862
KTLLRRSL	8	Unmodified	_KTLLRRSL_					0	0	0			REV__ENSG00000169230|ENST00000303204|PRELID1	REV__ENSG00000169230|ENST00000303204|PRELID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.797607421875	2	493.827101	985.639649	-0.44945	-0.00022195	-3.4119	-0.0016849	-3.8614	-0.0019069	493.82587000796065	51.323	0.17943	51.174	51.118	51.298	-0.14916					7	4	2	0	0	0	0.027866	1	5407	5407		35.618	6.4687	1	42442	+		35618	26338	24420	24472	41118	41118					0.14625434705067164
KTLLSIPEV	9	Unmodified	_KTLLSIPEV_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2922668457031	2	500.307875	998.601197	-0.093798	-4.6928E-05	0.21244	0.00010629	0.11865	5.9359E-05	500.307666903448	56.123	1.1852	56.123	55.75	56.936	0					61	33	3	0	0	0	0.024381	1	6211	6211		37.159	4.3467	1	1593900			35619	1583	24421	24473	41119	41119					0.10184084279887884
KTLNIRTSP	9	Unmodified	_KTLNIRTSP_					0	0	0		nc|ENSG00000148187|Q96E11-7|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;nc|ENSG00000148187|Q96E11-5|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-3|MRRF;ENSG00000148187|ENST00000344641|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.83935546875	2	515.306198	1028.59784	-0.57949	-0.00029862	4.4065	0.0022707	3.827	0.0019721	515.3083541195492	57.604	0.5285	57.371	57.095	57.624	-0.23363					22	13	2	0	0	0	0.024418	1	6294	6294		37.812	3.639	1	342560			35620	18368	24422	24474	41120	41120					0.08468834225891442
KTLNKLLEVLA	11	Unmodified	_KTLNKLLEVLA_					0	0	0			REV__nc|ENSG00000149262|Q96HW7-2|INTS4	REV__nc|ENSG00000149262|Q96HW7-2|INTS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.3924560546875	2	621.395013	1240.77547	-0.62673	-0.00038945	-2.5993	-0.0016152	-3.226	-0.0020046	621.3932608145468	103.28	0.71376	103.28	102.92	103.63	0					43	16	4	0	0	0	1.0684	1	13246	13246		20.03	0.033703	1	556010	+		35621	24666	24423	24475	41121	41121					0.16471664705250078
KTLNSSRNF	9	Unmodified	_KTLNSSRNF_					0	0	0			REV__nc|ENSG00000081665|Q5JVG8-2|ZNF506;REV__ENSG00000160229|ENST00000344519|ZNF66	REV__nc|ENSG00000081665|Q5JVG8-2|ZNF506	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7855224609375	2	533.78563	1065.55671	-0.61846	-0.00033013	-0.014766	-7.8819E-06	-0.63323	-0.00033801	533.7856258391365	23.852	0.80759	23.672	23.356	24.164	-0.17989					36	18	3	0	0	0	0.18915	1	994	994		90.777	0	1	2586900	+		35622	20682;25301	24424	24476	41122	41122					0.026550731864290356
KTLPADVQNY	10	Unmodified	_KTLPADVQNY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.8008422851562	2	574.800946	1147.58734	-0.60059	-0.00034522	-0.44063	-0.00025327	-1.0412	-0.00059849	574.8005596132542	43.892	0.73587	43.788	43.398	44.134	-0.10468					42	19	4	0	0	0	0.0041366	3	4050	4050;4062;4076		182.39	86.201	1	3520000			35623	5315	24425	24477	41123;41124;41125	41123					0.019448067808070846
KTLPADVQNY	10	Unmodified	_KTLPADVQNY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.800537109375	2	574.800946	1147.58734	-1.2115	-0.00069635	0.15178	8.7242E-05	-1.0597	-0.00060911	574.8010838705059	44.056	1.2658	43.811	43.412	44.678	-0.2444					74	33	4	0	0	0	0.0068679	3	4061	4061;4073;4087		174.86	65.895	1	3658500			35624	5315	24425	24477	41126;41127;41128	41126					0.019448067808070846
KTLPADVQNY	10	Unmodified	_KTLPADVQNY_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.80078125	2	574.800946	1147.58734	-1.1492	-0.00066055	0.46554	0.0002676	-0.68364	-0.00039296	574.8009707196402	44.068	0.7573	43.849	43.562	44.319	-0.21938					43	20	4	0	0	0	0.00041798	2	4066	4066;4079		192.64	84.551	1	3798100			35625	5315	24425	24477	41129;41130	41129					0.019448067808070846
KTLPDILTF	9	Unmodified	_KTLPDILTF_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000543961.1_1_12:25956587-25956887:+|nuORF;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.3077392578125	2	524.307875	1046.6012	-0.66163	-0.0003469	-0.01606	-8.4202E-06	-0.67769	-0.00035532	524.3078807019285	75.875	1.2762	75.602	75.186	76.462	-0.27266					92	31	4	0	0	0	0.0090779	6	8983	8950;8959;8971;8983;8997;9011		275.71	113.81	1	15592000			35626	5332	24426	24478	41131;41132;41133;41134;41135;41136	41134					0.07976084279880524
KTLPDILTF	9	Unmodified	_KTLPDILTF_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000543961.1_1_12:25956587-25956887:+|nuORF;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3079833984375	2	524.307875	1046.6012	-0.1585	-8.3105E-05	-0.2927	-0.00015347	-0.45121	-0.00023657	524.3077430394003	75.835	1.6165	75.577	75.2	76.816	-0.25865					114	39	5	0	0	0	0.0087688	6	8970	8961;8970;8981;8993;9006;9021		245.03	83.134	1	16359000			35627	5332	24426	24478	41137;41138;41139;41140;41141;41142	41138					0.07976084279880524
KTLPDILTF	9	Unmodified	_KTLPDILTF_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000543961.1_1_12:25956587-25956887:+|nuORF;ENST00000542926.5_1_12:104373661-104376713:+|nuORF;ENST00000545698.1_1_12:104359681-104373925:+|nuORF;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.3076782226562	2	524.307875	1046.6012	0.21097	0.00011061	-0.90662	-0.00047535	-0.69565	-0.00036474	524.3073973161969	75.703	1.3191	75.528	75.113	76.432	-0.17548					103	32	5	0	0	0	0.0088851	5	8966	8928;8943;8954;8966;8981		241.3	79.403	1	16292000			35628	5332	24426	24478	41143;41144;41145;41146;41147	41146					0.07976084279880524
KTLPLLRPY	9	Unmodified	_KTLPLLRPY_					0	0	0			REV__ENSG00000176986|ENST00000345254|SEC24C	REV__ENSG00000176986|ENST00000345254|SEC24C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3059692382812	2	550.844959	1099.67537	-0.41174	-0.0002268	-0.39684	-0.0002186	-0.80857	-0.0004454	550.8445586480361	58.815	0.27087	58.627	58.509	58.779	-0.18795					10	6	2	0	0	0	0.024539	1	6458	6458		14.865	8.1293	1	64892	+		35629	27072	24427	24479	41148	41148					0.1295147216208079
KTLPTEAMW	9	Unmodified	_KTLPTEAMW_					0	0	0		ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7770385742188	2	538.775885	1075.53722	-0.91128	-0.00049098	0.68903	0.00037123	-0.22225	-0.00011974	538.7762129873406	57.291	0.90194	57.124	56.823	57.725	-0.1672					54	23	4	0	0	0	0.51687	1	6265	6265		58.23	5.2932	1	1829800			35630	2920	24428	24480	41149	41149					0.002469808513069438
KTLPTEAMW	9	Unmodified	_KTLPTEAMW_					0	0	0		ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.777099609375	2	538.775885	1075.53722	-0.14352	-7.7326E-05	-0.031131	-1.6773E-05	-0.17465	-9.4099E-05	538.7758570321666	57.358	0.81538	57.156	56.962	57.777	-0.20209					41	21	3	0	0	0	0.45795	1	6264	6264		62.107	6.6032	1	2077200			35631	2920	24428	24480	41150	41150					0.002469808513069438
KTLPTEAMW	9	Unmodified	_KTLPTEAMW_					0	0	0		ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.77587890625	2	538.775885	1075.53722	-1.2637	-0.00068087	0.74122	0.00039935	-0.52251	-0.00028152	538.7762689677453	57.457	1.0107	57.224	56.691	57.702	-0.23363					48	26	3	0	0	0	0.45795	1	6282	6282		62.107	1.7038	1	1868400			35632	2920	24428	24480	41151	41151					0.002469808513069438
KTLPVPGL	8	Unmodified	_KTLPVPGL_					0	0	0			REV__ENSG00000088038|ENST00000221232|CNOT3	REV__ENSG00000088038|ENST00000221232|CNOT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.21905517578125	2	412.765646	823.516739	-0.17367	-7.1685E-05	4.3241	0.0017849	4.1505	0.0017132	412.76717777584133	41.743	1.4473	41.513	40.485	41.932	-0.23029					50	38	2	0	0	0	0.027866	1	3580	3580		24.203	11.244	1	166000	+		35633	20806	24429	24481	41152	41152					0.09792178253815109
KTLQDVTQI	9	Unmodified	_KTLQDVTQI_					0	0	0			REV__ENST00000566321.5_1_15:29046634-29050027:+|nuORF	REV__ENST00000566321.5_1_15:29046634-29050027:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.30224609375	2	523.298039	1044.58152	-0.62686	-0.00032804	-1.0592	-0.00055425	-1.686	-0.00088229	523.2975835347956	52.011	1.7959	51.863	51.336	53.132	-0.14735					115	48	4	0	0	0	0.094442	1	5573	5573		112.41	4.3234	1	24060000	+		35634	35196	24430	24482	41153	41153					0.06101708269147821
KTLQLETSF	9	Unmodified	_KTLQLETSF_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR;ENSG00000164327|ENST00000357387|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2431640625	2	533.792589	1065.57063	-0.19517	-0.00010418	-0.070984	-3.7891E-05	-0.26616	-0.00014207	533.792360386751	56.471	1.3236	56.255	55.372	56.696	-0.21607					58	34	3	0	0	0	0.024307	1	6106	6106		38.754	5.9412	1	1443400			35635	18456	24431	24483	41154	41154					0.04046305894848956
KTLQLSHKSDS	11	Unmodified	_KTLQLSHKSDS_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.3359375	2	622.335684	1242.65681	0.86696	0.00053954	0.57632	0.00035866	1.4433	0.0008982	622.3359965526924	109.95	0.83836	109.95	109.77	110.61	0					74	26	4	0	0	0	1.0075	1	13998	13998		35.152	8.1047	1	2123200			35636	9461	24432	24484	41155	41155					0.04519265729572908
KTLREGILV	9	Unmodified	_KTLREGILV_					0	0	0		ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8394165039062	2	514.826766	1027.63898	-0.67875	-0.00034944	-3.6504	-0.0018793	-4.3292	-0.0022288	514.8235070026923	57.313	0.28604	57.145	56.967	57.253	-0.1672					8	7	2	0	0	0	0.02435	1	6251	6251		51.335	0	1	141540			35637	10507	24433	24485	41156	41156					0.12626595265373908
KTLRLVSMP	9	Unmodified	_KTLRLVSMP_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant	ENSG00000127603|ENST00000564288|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7615966796875	2	522.815344	1043.61614	0.73078	0.00038206	-2.6858	-0.0014042	-1.9551	-0.0010221	522.8133162414501	59.495	0.39573	59.316	59.156	59.551	-0.17899					14	9	2	0	0	0	0.024477	1	6616	6616		44.117	8.4985	1	176410			35638	4256	24434	24486	41157	41157					0.0960725287625337
KTLRTEKN	8	Unmodified	_KTLRTEKN_					0	0	0			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7845458984375	2	495.290548	988.566543	-0.31078	-0.00015393	-2.0499	-0.0010153	-2.3607	-0.0011692	495.2894373678035	32.661	0.6929	32.503	32.035	32.728	-0.15772					34	16	3	0	0	0	0.027866	1	2260	2260		37.812	0	1	949380	+		35639	20949	24435	24487	41158	41158					0.07180261191808768
KTLRVVPE	8	Unmodified	_KTLRVVPE_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5;CON__Q1A7A4	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;CON__Q1A7A4	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.29290771484375	2	471.292559	940.570566	0.3653	0.00017216	-0.44603	-0.00021021	-0.080726	-3.8046E-05	471.29235913514	50.39	1.4067	50.238	49.817	51.224	-0.1512					111	40	4	0	0	0	0.89803	1	5217	5217		51.193	1.7511	1	27149000		+	35640	198;540	24436	24488	41159	41159					0.09790350685523208
KTLRVVPE	8	Unmodified	_KTLRVVPE_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5;CON__Q1A7A4	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;CON__Q1A7A4	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2926330566406	2	471.292559	940.570566	0.54867	0.00025858	-0.64577	-0.00030435	-0.097105	-4.5765E-05	471.2922474433009	50.099	1.4463	50.18	49.775	51.221	0.080994					107	41	4	0	0	0	0.56311	1	5131	5131		79.713	18.741	1	26009000		+	35641	198;540	24436	24488	41160	41160					0.09790350685523208
KTLSDIFLLF	10	Unmodified	_KTLSDIFLLF_					0	0	0		ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	598.8502197265625	2	598.849907	1195.68526	0.35238	0.00021102	0.12439	7.4489E-05	0.47676	0.00028551	598.8498051365648	96.809	0.98451	96.673	96.346	97.331	-0.13671					65	21	4	0	0	0	0.83673	3	11973	11951;11962;11973		58.23	7.2181	1	931420			35642	6203	24437	24489	41161;41162;41163	41163					0.0952461537679028
KTLSDIFLLF	10	Unmodified	_KTLSDIFLLF_					0	0	0		ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	598.8500366210938	2	598.849907	1195.68526	0.37783	0.00022627	-0.17337	-0.00010382	0.20446	0.00012244	598.849704993701	96.766	1.0662	96.643	96.352	97.418	-0.12305					64	23	4	0	0	0	0.6365	2	11985	11974;11985		72.879	28.502	1	1211300			35643	6203	24437	24489	41164;41165	41165					0.0952461537679028
KTLSDIFLLF	10	Unmodified	_KTLSDIFLLF_					0	0	0		ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	ENSG00000151465|ENST00000281141|CDC123	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.8497924804688	2	598.849907	1195.68526	-0.41013	-0.0002456	0.72465	0.00043396	0.31452	0.00018835	598.8502279932983	96.846	0.98072	96.685	96.375	97.356	-0.16106					54	21	4	0	0	0	0.96822	2	11949	11949;11971		49.536	5.5634	1	886690			35644	6203	24437	24489	41166;41167	41166					0.0952461537679028
KTLSEGELGP	10	Unmodified	_KTLSEGELGP_					0	0	0			REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	REV__ENST00000336095.10_1_20:3944626-3995914:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7724609375	2	515.774396	1029.53424	-0.80413	-0.00041475	0.94508	0.00048745	0.14095	7.2699E-05	515.7748295675646	66.716	0.58585	66.746	66.491	67.077	0.030106					33	13	3	0	0	0	0.85955	1	7862	7862		56.721	0.28726	1	2407100	+		35645	30543	24438	24490	41168	41168					0.020654289981621332
KTLSEYNF	8	Unmodified	_KTLSEYNF_					0	0	0		ENSG00000117501|ENST00000367759|MROH9;nc|ENSG00000117501|Q5TGP6|MROH9	ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8005676269531	2	501.250557	1000.48656	-0.33592	-0.00016838	0.85461	0.00042837	0.51868	0.00025999	501.2504590799765	46.912	0.69612	46.971	46.693	47.389	0.059097					40	18	3	0	0	0	0.027866	1	4589	4589		44.117	0	1	533710			35646	3634	24439	24491	41169	41169					-0.013662252020480992
KTLSLQTKL	9	Unmodified	_KTLSLQTKL_					0	0	0		AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|6|2|sense	AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|6|2|sense	AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|6|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	516.326599	1030.63865	-0.10767	-5.5594E-05	-0.18605	-9.6061E-05	-0.29372	-0.00015165	516.3263310135511	25.207	0.46065	25.036	24.869	25.33	-0.17078					15	10	2	0	0	0	0.0245	1	1153	1153		44.377	7.9304	1	57613			35647	70	24440	24492	41170	41170					0.12455175545505881
KTLSSGHNNH	10	Unmodified	_KTLSSGHNNH_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3170166015625	2	547.770511	1093.52647	-1.2632	-0.00069194	0.69638	0.00038146	-0.56682	-0.00031049	547.7707142059725	43.526	0.508	43.385	43.135	43.643	-0.14098					22	13	2	0	0	0	0.03519	1	4055	4055		51.193	8.7966	1	142300	+		35648	23842	24441	24493	41171	41171					-0.016552854787505566
KTLSTPTK	8	Unmodified	_KTLSTPTK_					0	0	0			REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.2636413574219	2	438.263468	874.512382	-0.26291	-0.00011522	0.67584	0.00029619	0.41293	0.00018097	438.2635997660627	40.938	1.3336	40.71	40.366	41.699	-0.2278					73	34	3	0	0	0	1.0574	1	3594	3594		25.574	1.3713	1	1881500	+		35649	24192	24442	24494	41172	41172					0.07010669040221273
KTLSVKGI	8	Unmodified	_KTLSVKGI_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.27508544921875	2	423.276378	844.538203	0.26201	0.0001109	-3.622	-0.0015331	-3.36	-0.0014222	423.2746738288438	110.24	0.60139	110.24	110.02	110.62	0.0059204					41	17	3	0	0	0	1.0198	1	13887	13887		34.173	6.2903	1	261390			35650	8490	24443	24495	41173	41173					0.10971563282521402
KTLSVKGI	8	Unmodified	_KTLSVKGI_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	423.276378	844.538203	0.052604	2.2266E-05	-3.1925	-0.0013513	-3.1399	-0.0013291	423.274922783063	110.18	0.56607	110.17	109.97	110.53	-0.009491	-0.10938	-0.00013354	NaN	34.173	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513920			35651	8490	24443	24495							0.10971563282521402
KTLSVKGI	8	Unmodified	_KTLSVKGI_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	423.276378	844.538203	-1.083	-0.00045839	-1.9693	-0.00083358	-3.0523	-0.001292	423.27536516570564	110.55	0.61525	110.41	110.14	110.75	-0.13983	0.13435	0.00090195	NaN	34.173	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110870			35652	8490	24443	24495							0.10971563282521402
KTLTDISNQW	10	Unmodified	_KTLTDISNQW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	603.310791015625	2	603.311677	1204.6088	-0.82861	-0.00049991	0.76677	0.0004626	-0.061846	-3.7312E-05	603.312079965623	57.083	0.76922	56.916	56.637	57.406	-0.1672					35	20	2	0	0	0	0.0017702	1	6212	6212		188.91	59.491	1	3440800			35653	1175	24444	24496	41174	41174					0.01468191809522068
KTLTDISNQW	10	Unmodified	_KTLTDISNQW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.3112182617188	2	603.311677	1204.6088	-0.2494	-0.00015047	0.29411	0.00017744	0.044705	2.6971E-05	603.311771247624	57.141	0.84953	56.917	56.661	57.51	-0.2248					50	22	3	0	0	0	8.6211E-05	1	6217	6217		206.73	91.834	1	3434300			35654	1175	24444	24496	41175	41175					0.01468191809522068
KTLTDISNQW	10	Unmodified	_KTLTDISNQW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	603.311677	1204.6088	-1.4279	-0.00086145	4.7664	0.0028756	3.3385	0.0020142	603.314487681637	57.196	0.5606	57.196	56.936	57.496	0	0.151	0.0036598	NaN	206.73	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146500			35655	1175	24444	24496							0.01468191809522068
KTLTDISNQW	10	Unmodified	_KTLTDISNQW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	603.311677	1204.6088	-0.064228	-3.875E-05	3.1634	0.0019085	3.0992	0.0018698	603.3135593717997	57.405	0.63611	57.23	56.898	57.534	-0.1749	0.18502	0.0017256	NaN	206.73	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953370			35656	1175	24444	24496							0.01468191809522068
KTLTDISNQW	10	Unmodified	_KTLTDISNQW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	603.311677	1204.6088	-1.4866	-0.00089687	4.7674	0.0028763	3.2809	0.0019794	603.3144572663203	57.008	0.58271	57.103	56.846	57.429	0.095306	0.057818	0.0036611	NaN	206.73	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1048000			35657	1175	24444	24496							0.01468191809522068
KTLTIDMKI	9	Unmodified	_KTLTIDMKI_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8173217773438	2	531.81501	1061.61547	0.30294	0.00016111	2.8637	0.001523	3.1666	0.0016841	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.84115	1	11010	11010		36.447	1.2947	1	3405600	+		35658	28019	24445	24497	41176	41176					0.0871241343654674
KTLTLPTVW	9	Unmodified	_KTLTLPTVW_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943608-50943827:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.8160400390625	2	529.815867	1057.61718	0.011224	5.9465E-06	-0.20364	-0.00010789	-0.19242	-0.00010194	529.8155999738575	71.396	0.76812	71.121	70.743	71.511	-0.27509					45	17	4	0	0	0	0.34489	1	8333	8333		69.628	3.1983	1	1258400			35659	2161	24446	24498	41177	41177					0.09067790516814966
KTLTLPTVW	9	Unmodified	_KTLTLPTVW_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943608-50943827:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.8162841796875	2	529.815867	1057.61718	-0.35067	-0.00018579	0.32384	0.00017158	-0.026826	-1.4213E-05	529.815879491404	71.4	0.78979	71.138	70.69	71.48	-0.26199					43	18	3	0	0	0	0.19099	2	8342	8329;8342		90.37	20.742	1	1627400			35660	2161	24446	24498	41178;41179	41179					0.09067790516814966
KTLTLPTVW	9	Unmodified	_KTLTLPTVW_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943608-50943827:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.81591796875	2	529.815867	1057.61718	0.6931	0.00036722	-0.76152	-0.00040346	-0.068417	-3.6248E-05	529.8152993530313	71.236	0.67918	71.03	70.703	71.382	-0.20613					38	15	3	0	0	0	0.15366	1	8311	8311		98.629	21.312	1	1455500			35661	2161	24446	24498	41180	41180					0.09067790516814966
KTLTQGGVTY	10	Unmodified	_KTLTQGGVTY_					0	0	0		ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.29052734375	2	534.290214	1066.56587	-0.64864	-0.00034656	1.1503	0.00061457	0.50162	0.00026801	534.2907463274697	39.437	0.68713	39.273	39.044	39.731	-0.16459					41	17	3	0	0	0	0.024648	2	3341	3341;3354		159.34	56.955	1	3641000			35662	9222	24447	24499	41181;41182	41181					0.035254217521242026
KTLTQGGVTY	10	Unmodified	_KTLTQGGVTY_					0	0	0		ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2902221679688	2	534.290214	1066.56587	-0.83253	-0.00044481	1.2977	0.00069336	0.46519	0.00024855	534.2908508108414	39.585	0.7032	39.362	39.111	39.815	-0.22311					45	17	3	0	0	0	0.016018	3	3353	3353;3364;3379		166.07	72.876	1	3642800			35663	9222	24447	24499	41183;41184;41185	41183					0.035254217521242026
KTLTQGGVTY	10	Unmodified	_KTLTQGGVTY_					0	0	0		ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	ENSG00000183386|ENST00000373016|FHL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2898559570312	2	534.290214	1066.56587	-0.42349	-0.00022627	0.75008	0.00040076	0.32659	0.00017449	534.2905241436439	39.565	0.95501	39.339	39.096	40.051	-0.2257					55	24	3	0	0	0	0.03873	2	3345	3345;3359		150.81	70.356	1	3646100			35664	9222	24447	24499	41186;41187	41186					0.035254217521242026
KTLVKSHSL	9	Unmodified	_KTLVKSHSL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3028869628906	2	506.811116	1011.60768	0.0071921	3.645E-06	2.1684	0.001099	2.1756	0.0011026	506.81122610895534	56.981	0.68816	56.756	56.347	57.035	-0.22479					23	17	2	0	0	0	0.024484	1	6198	6198		23.523	0	1	177780			35665	2543	24448	24500	41188	41188					0.10234022231293238
KTLVRGTQI	9	Unmodified	_KTLVRGTQI_					0	0	0			REV__ENST00000539960.1_1_11:60665249-60666641:-|nuORF	REV__ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.32843017578125	2	508.316566	1014.61858	-0.5581	-0.00028369	-0.36676	-0.00018643	-0.92485	-0.00047012	508.3163341716572	33.868	0.54688	33.868	33.662	34.209	0					34	13	3	0	0	0	0.023454	1	2463	2463		82.241	22.122	1	504940	+		35666	21840	24449	24501	41189	41189					0.11185424605582739
KTLWGKKF	8	Unmodified	_KTLWGKKF_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.30364990234375	2	504.30547	1006.59639	0.25829	0.00013026	-3.9297	-0.0019818	-3.6715	-0.0018515	504.3033645824667	23.584	1.1821	23.382	22.92	24.102	-0.20193					71	26	4	0	0	0	0.59392	1	944	944		76.847	2.5916	1	1644800	+		35667	23340	24450	24502	41190	41190					0.09335244927797248
KTLWGKKF	8	Unmodified	_KTLWGKKF_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.3036193847656	2	504.30547	1006.59639	-0.38533	-0.00019433	-3.1314	-0.0015792	-3.5167	-0.0017735	504.30375170564406	23.516	0.89315	23.336	22.975	23.868	-0.17989					58	20	4	0	0	0	0.33369	1	936	936		106.42	16.045	1	2025300	+		35668	23340	24450	24502	41191	41191					0.09335244927797248
KTMETAEKL	9	Unmodified	_KTMETAEKL_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.3023681640625	2	525.778625	1049.5427	-0.29837	-0.00015688	-2.9491	-0.0015506	-3.2475	-0.0017075	525.7772877907214	72.104	0.54438	72.104	71.869	72.414	0					21	13	2	0	0	0	0.024511	1	8778	8778		13.454	0	1	195710			35669	1277	24451	24503	41192	41192					0.019906596430928403
KTMHKRLT	8	Unmodified	_KTMHKRLT_					0	0	0			REV__ZBTB11|p.R927L|1|0.19|ENSG00000066422|chr3:101651548-101651548|C/A|missense_variant	REV__ZBTB11|p.R927L|1|0.19|ENSG00000066422|chr3:101651548-101651548|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2820129394531	2	507.797486	1013.58042	1.7971	0.00091257	3.9078	0.0019843	5.7049	0.0028969	507.7994351073702	24.046	0.44502	23.865	23.626	24.072	-0.18089					13	8	2	0	0	0	0.027866	1	966	966		51.335	7.2187	1	98056	+		35670	20335	24452	24504	41193	41193					0.07417215419229706
KTMHQEAQV	9	Unmodified	_KTMHQEAQV_					0	0	0		NDUFV3|p.L19H|1|0.14|ENSG00000160194|chr21:42896934-42896934|T/A|missense_variant	NDUFV3|p.L19H|1|0.14|ENSG00000160194|chr21:42896934-42896934|T/A|missense_variant	NDUFV3|p.L19H|1|0.14|ENSG00000160194|chr21:42896934-42896934|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.70751953125	2	536.266216	1070.51788	-0.33849	-0.00018152	-2.4611	-0.0013198	-2.7996	-0.0015013	536.2648676014454	56.913	0.53394	56.688	56.464	56.998	-0.22479					18	13	2	0	0	0	0.024257	1	6183	6183		49.536	13.089	1	159710			35671	18868	24453	24505	41194	41194					-0.014559754396032076
KTMLVLWNPSI	11	Unmodified	_KTMLVLWNPSI_					0	0	0		ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7666015625	3	434.581053	1300.72133	1.5457	0.00067175	0.77426	0.00033648	2.32	0.0010082	435.2506009786019	19.1	0.49319	19.1	18.873	19.366	0					17	9	3	0	0	0	0.024779	1	389	389		8.0344	0	1	51054			35672	15983	24454	24506	41195	41195					0.08299749281991353
KTMRTVHSP	9	Unmodified	_KTMRTVHSP_					0	0	0			REV__WNT2|p.T315P|1|0.27|ENSG00000105989|chr7:117278295-117278295|T/G|missense_variant	REV__WNT2|p.T315P|1|0.27|ENSG00000105989|chr7:117278295-117278295|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.8008422851562	2	528.784576	1055.5546	-0.96481	-0.00051018	2.6297	0.0013906	1.6649	0.00088039	528.7852940467657	38.977	0.77628	38.754	38.185	38.961	-0.22311					30	20	2	0	0	0	0.024021	1	3204	3204		68.787	2.3575	1	319340	+		35673	37785	24455	24507	41196	41196					0.02904321176947633
KTMTASFLFT	10	Unmodified	_KTMTASFLFT_					0	0	0			REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.1969604492188	2	573.796817	1145.57908	-0.37685	-0.00021623	-1.0737	-0.00061608	-1.4505	-0.00083231	573.7961738788014	32.54	0.4832	32.382	32.121	32.605	-0.15772					21	11	3	0	0	0	0.03519	1	2243	2243		36.447	20.805	1	119820	+		35674	28750	24456	24508	41197	41197					0.012115365398130962
KTMTASFLFT	10	Unmodified	_KTMTASFLFT_					0	0	0			REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	573.796817	1145.57908	-0.011918	-6.8383E-06	-0.061259	-3.515E-05	-0.073177	-4.1989E-05	573.7979327908179	32.57	0.4945	32.334	32.086	32.581	-0.23666	-0.024307	0.00072584	NaN	22.58	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105190	+		35675	28750	24456	24508							0.012115365398130962
KTMYRFEY	8	Unmodified	_KTMYRFEY_					0	0	0		ENST00000377754.6_1_9:37762010-37768080:+|nuORF;ENST00000297994.3_1_9:37762104-37768080:+|nuORF;ENST00000537911.5_1_9:37762107-37769963:+|nuORF;ENST00000538370.5_1_9:37762010-37763860:+|nuORF;ENST00000488673.6_1_9:37762104-37763860:+|nuORF	ENST00000377754.6_1_9:37762010-37768080:+|nuORF	ENST00000377754.6_1_9:37762010-37768080:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.302734375	2	569.273509	1136.53247	-0.19576	-0.00011144	2.4493	0.0013943	2.2535	0.0012829	569.2748357958563	49.595	0.15223	49.444	49.33	49.482	-0.1512					5	3	2	0	0	0	0.027866	1	5102	5102		24.203	1.1603	1	47266			35676	11870	24457	24509	41198	41198					-0.03033903291475326
KTNAAEPSWRT	11	Unmodified	_KTNAAEPSWRT_					0	0	0		ENST00000369043.7_3_10:123662029-123662107:-|nuORF	ENST00000369043.7_3_10:123662029-123662107:-|nuORF	ENST00000369043.7_3_10:123662029-123662107:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.88275146484375	3	420.882559	1259.62585	1.1941	0.00050259	-0.66828	-0.00028127	0.52586	0.00022133	420.8820339710339	17.783	0.39938	17.629	17.408	17.807	-0.15403					17	7	3	0	0	0	1.0621	1	235	235		21.78	0.94327	1	140740			35677	12913	24458	24510	41199	41199					0.006421124153121127
KTNDLLRGI	9	Unmodified	_KTNDLLRGI_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.839111328125	2	515.306198	1028.59784	0.18269	9.4139E-05	3.4644	0.0017852	3.647	0.0018793	515.3078711571238	57.454	0.40424	57.251	57.064	57.469	-0.20208					19	10	2	0	0	0	0.023454	1	6250	6250		62.107	5.3864	1	348310			35678	1265	24459	24511	41200	41200					0.08468834225914179
KTNELHDI	8	Unmodified	_KTNELHDI_					0	0	0			REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.3081359863281	2	485.253631	968.49271	0.22336	0.00010839	3.9935	0.0019379	4.2169	0.0020463	485.25546635798077	78.916	0.51523	78.684	78.346	78.861	-0.23141					18	11	2	0	0	0	0.027866	1	9395	9395		15.642	0	1	111300	+		35679	28750	24460	24512	41201	41201					0.007202930294738508
KTNESKKGK	9	Unmodified	_KTNESKKGK_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;ENST00000548440.1_1_2:160178483-160189161:-|nuORF	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2827453613281	2	510.29583	1018.57711	-1.0707	-0.00054638	-1.2712	-0.00064868	-2.3419	-0.0011951	510.7945025097968	60.963	0.88898	60.787	60.483	61.372	-0.1761					52	21	4	0	0	0	0.024397	1	6884	6884		31.53	0	1	942970			35680	3993	24461	24513	41202	41202					0.06856243846232246
KTNIELKV	8	Unmodified	_KTNIELKV_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.76348876953125	2	472.792392	943.570232	-0.34022	-0.00016085	0.21097	9.9743E-05	-0.12926	-6.1111E-05	472.79242726881887	22.993	0.27735	22.808	22.646	22.923	-0.18539					9	5	2	0	0	0	0.027866	1	874	874		31.955	0	1	49061			35681	5056	24462	24514	41203	41203					0.0961893096566655
KTNIQKEATW	10	Unmodified	_KTNIQKEATW_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.8878173828125	3	406.887422	1217.64044	0.25788	0.00010493	0.18889	7.6856E-05	0.44677	0.00018179	406.88744857000404	33.743	0.71759	33.515	33.276	33.993	-0.22829					46	17	4	0	0	0	0.59525	2	2431	2431;2443		77.533	18.904	1	2831400			35682	9139	24463	24515	41204;41205	41204					0.04032184563448027
KTNIQKEATW	10	Unmodified	_KTNIQKEATW_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	609.8275146484375	2	609.827495	1217.64044	-1.1745	-0.00071622	1.4141	0.00086238	0.23969	0.00014617	609.8282892562215	33.748	0.76034	33.521	33.196	33.957	-0.22736					52	18	4	0	0	0	0.064225	1	2437	2437		157.34	56.092	1	1751000			35683	9139	24463	24515	41206	41206					0.04032184563448027
KTNIQKEATW	10	Unmodified	_KTNIQKEATW_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.887939453125	3	406.887422	1217.64044	0.19975	8.1276E-05	0.15144	6.1619E-05	0.35119	0.00014289	406.88746680036184	33.663	0.65764	33.463	33.209	33.866	-0.20019					45	16	4	0	0	0	0.53069	3	2412	2412;2422;2436		84.817	29.818	1	3144000			35684	9139	24463	24515	41207;41208;41209	41207					0.04032184563448027
KTNIQKEATW	10	Unmodified	_KTNIQKEATW_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	609.8277587890625	2	609.827495	1217.64044	-0.66145	-0.00040337	0.67557	0.00041198	0.014125	8.6141E-06	609.827838538001	33.661	0.58419	33.461	33.247	33.831	-0.20019					44	14	4	0	0	0	0.0058874	1	2419	2419		192.64	104.94	1	2453600			35685	9139	24463	24515	41210	41210					0.04032184563448027
KTNIQKEATW	10	Unmodified	_KTNIQKEATW_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.8878173828125	3	406.887422	1217.64044	-1.269	-0.00051634	1.6742	0.00068121	0.4052	0.00016487	406.8880718104609	33.643	0.94307	33.477	33.156	34.099	-0.16565					58	23	4	0	0	0	0.61193	1	2401	2401		75.652	1.8111	1	2619100			35686	9139	24463	24515	41211	41211					0.04032184563448027
KTNIQKEATW	10	Unmodified	_KTNIQKEATW_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	609.827495	1217.64044	-1.4695	-0.00089615	1.4223	0.00086739	-0.047165	-2.8763E-05	609.8283292132007	33.647	0.63497	33.481	33.156	33.791	-0.16565	-0.0063638	0.00019714	NaN	192.64	49	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1705400			35687	9139	24463	24515							0.04032184563448027
KTNKRKWNRWI	11	Unmodified	_KTNKRKWNRWI_					0	0	0			REV__nc|ENSG00000157193|Q14114-2|LRP8	REV__nc|ENSG00000157193|Q14114-2|LRP8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.634521484375	3	510.631909	1528.8739	0.040542	2.0702E-05	4.4035	0.0022486	4.444	0.0022693	510.63400900848177	101.96	1.5186	101.83	100.98	102.5	-0.12666					101	36	4	0	0	0	1.1135	1	12674	12674		6.3209	0.31984	1	138840	+		35688	25118	24464	24516	41212	41212					0.1306170579364334
KTNLAAYVP	9	Unmodified	_KTNLAAYVP_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2377014160156	2	488.776742	975.538931	-0.24809	-0.00012126	0.45042	0.00022016	0.20233	9.8895E-05	488.7766620295512	34.674	0.86818	34.491	34.12	34.988	-0.18361					55	21	4	0	0	0	0.024523	1	2621	2621		21.96	0	1	1221700			35689	2480;18139	24465	24517	41213	41213					0.050183579315557836
KTNLAAYVP	9	Unmodified	_KTNLAAYVP_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.776742	975.538931	-0.31696	-0.00015492	0.30874	0.00015091	-0.0082173	-4.0164E-06	488.77670324310066	34.748	0.68586	34.533	34.227	34.913	-0.21555	0.038373	-3.1519E-05	NaN	21.96	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1194200			35690	2480;18139	24465	24517							0.050183579315557836
KTNLKRLD	8	Unmodified	_KTNLKRLD_					0	0	0			REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3011474609375	2	494.300916	986.587279	0.89614	0.00044296	-1.5866	-0.00078426	-0.69047	-0.0003413	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	1.0009	1	12142	12142		37.159	2.9866	1	45891000	+		35691	22663	24466	24518	41214	41214					0.09344851571461277
KTNLQNVF	8	Unmodified	_KTNLQNVF_					0	0	0			REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF	REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.80548095703125	2	482.266542	962.51853	-0.053391	-2.5748E-05	-1.0492	-0.000506	-1.1026	-0.00053175	482.2656903249645	54.042	0.63121	53.895	53.456	54.088	-0.14723					37	17	3	0	0	0	0.027866	1	5788	5788		38.806	1.647	1	439100	+		35692	24447	24467	24519	41215	41215					0.03577187271753246
KTNLSDNSVY	10	Unmodified	_KTNLSDNSVY_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.7802124023438	2	570.78021	1139.54587	-0.54428	-0.00031067	0.38592	0.00022028	-0.15836	-9.0391E-05	570.7804121082415	25.916	0.58142	25.68	25.425	26.007	-0.23603					40	14	4	0	0	0	0.29487	1	1276	1276		109.48	18.877	1	2876700	+		35693	22486	24468	24520	41216	41216					-0.018323739785273574
KTNLSDNSVY	10	Unmodified	_KTNLSDNSVY_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.780029296875	2	570.78021	1139.54587	-0.083025	-4.7389E-05	-0.023057	-1.316E-05	-0.10608	-6.055E-05	570.780133914128	25.661	0.89886	25.491	24.997	25.896	-0.17078					48	22	4	0	0	0	0.54901	1	1248	1248		82.75	0.50997	1	2907100	+		35694	22486	24468	24520	41217	41217					-0.018323739785273574
KTNPEVHNY	9	Unmodified	_KTNPEVHNY_					0	0	0		nc|ENSG00000095203|Q9H329-2|EPB41L4B;EPB41L4B|p.F822Sfs*26|1|0.57|ENSG00000095203|chr9:109182751-109182751|A/-|frameshift_variant;ENSG00000095203|ENST00000374566|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.26953125	2	551.269813	1100.52507	0.21068	0.00011614	-0.44069	-0.00024294	-0.23	-0.00012679	551.2694988079322	22.807	0.69985	22.618	22.327	23.027	-0.18894					35	14	4	0	0	0	0.32064	1	847	847		72.879	30.483	1	313670			35695	18115	24469	24521	41218	41218					-0.021169195675156516
KTNPEVHNY	9	Unmodified	_KTNPEVHNY_					0	0	0		nc|ENSG00000095203|Q9H329-2|EPB41L4B;EPB41L4B|p.F822Sfs*26|1|0.57|ENSG00000095203|chr9:109182751-109182751|A/-|frameshift_variant;ENSG00000095203|ENST00000374566|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.2694091796875	2	551.269813	1100.52507	0.98351	0.00054218	-1.2401	-0.00068365	-0.25662	-0.00014147	551.2689641423741	22.938	0.50849	22.747	22.526	23.034	-0.19117					26	10	3	0	0	0	0.247	1	834	834		82.75	33.309	1	344600			35696	18115	24469	24521	41219	41219					-0.021169195675156516
KTNPEVHNY	9	Unmodified	_KTNPEVHNY_					0	0	0		nc|ENSG00000095203|Q9H329-2|EPB41L4B;EPB41L4B|p.F822Sfs*26|1|0.57|ENSG00000095203|chr9:109182751-109182751|A/-|frameshift_variant;ENSG00000095203|ENST00000374566|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	551.269813	1100.52507	-0.48661	-0.00026825	0.26183	0.00014434	-0.22478	-0.00012391	551.2698734745812	22.96	0.5995	22.775	22.507	23.107	-0.18539	0.061652	0.00062688	NaN	82.75	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306740			35697	18115	24469	24521							-0.021169195675156516
KTNPSRIRIAL	11	Unmodified	_KTNPSRIRIAL_					0	0	0		ENSG00000136098|ENST00000610828|NEK3	ENSG00000136098|ENST00000610828|NEK3	ENSG00000136098|ENST00000610828|NEK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.8927612304688	2	634.893503	1267.77245	-0.77889	-0.00049451	-1.0276	-0.0006524	-1.8065	-0.0011469	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	1.013	1	12974	12974		33.922	2.3918	1	1853200			35698	4980	24470	24522	41220	41220					0.14927834371087556
KTNQNAVNLA	10	Unmodified	_KTNQNAVNLA_					0	0	0			REV__nc|ENSG00000117640|Q9H019-2|MTFR1L	REV__nc|ENSG00000117640|Q9H019-2|MTFR1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7801513671875	2	536.790912	1071.56727	-1.0893	-0.00058475	0.70811	0.00038011	-0.38123	-0.00020464	536.7912299801098	35.149	0.55564	35.193	34.941	35.497	0.04406					38	14	4	0	0	0	0.03519	1	2647	2647		39.253	6.4404	1	437270	+		35699	36601	24471	24523	41221	41221					0.034350558408505094
KTNRKAAA	8	Unmodified	_KTNRKAAA_					0	0	0			REV__ENSG00000215252|ENST00000683415|GOLGA8B	REV__ENSG00000215252|ENST00000683415|GOLGA8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.248046875	2	430.259051	858.503549	-0.63593	-0.00027361	2.1546	0.00092701	1.5186	0.0006534	430.25974442575927	44.316	0.21056	44.071	44.01	44.22	-0.2444					7	5	2	0	0	0	0.027866	1	4132	4132		11.511	0	1	79765	+		35700	26933	24472	24524	41222	41222					0.06863740194398815
KTNRLLLI	8	Unmodified	_KTNRLLLI_					0	0	0		ENST00000539135.1_1_12:4358286-4385349:-|nuORF	ENST00000539135.1_1_12:4358286-4385349:-|nuORF	ENST00000539135.1_1_12:4358286-4385349:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.92822265625	2	485.824027	969.633501	-0.14117	-6.8583E-05	0.057416	2.7894E-05	-0.083753	-4.0689E-05	485.8240195115605	45.317	0.38709	45.064	44.905	45.292	-0.25252					16	10	2	0	0	0	0.027866	1	4264	4264		23.042	7.4007	1	125700			35701	16397	24473	24525	41223	41223					0.1474691647357531
KTNRLNIL	8	Unmodified	_KTNRLNIL_					0	0	0		nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000125648|Q9BV35-3|SLC25A23	nc|ENSG00000125648|Q9BV35-4|SLC25A23	nc|ENSG00000125648|Q9BV35-4|SLC25A23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3055419921875	2	486.303458	970.592364	-0.28783	-0.00013997	3.4377	0.0016718	3.1499	0.0015318	486.3050998143415	72.766	0.8815	72.766	72.373	73.254	0					55	21	4	0	0	0	0.94517	1	8874	8874		45.952	0	1	1696600			35702	4124	24474	24526	41224	41224					0.10589155434081476
KTNRQKKEV	9	Unmodified	_KTNRQKKEV_					0	0	0		ENST00000606851.5_1_6:22020665-22056887:+|nuORF	ENST00000606851.5_1_6:22020665-22056887:+|nuORF	ENST00000606851.5_1_6:22020665-22056887:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8355102539062	2	565.835654	1129.65676	0.39662	0.00022442	-0.85419	-0.00048333	-0.45757	-0.00025891	565.8351814446705	21.761	0.95173	21.584	21.162	22.113	-0.17721					54	19	5	0	0	0	0.80003	1	740	740		39.253	0.44669	1	1719400			35703	17570	24475	24527	41225	41225					0.09711310520197003
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MSMS	OPSCC_40_ClassI_Rep-1	4	523.3237915039062	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.032	1	49.926	49.426	50.426	-0.10558								0	0	0	0.024584	1	5063	5063		124.08	47.233	1				35704	4169	24476	24528	41226	41226					0.1126349675369056
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MSMS	OPSCC_40_ClassI_Rep-1	4	523.3240356445312	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.122	1	50.016	49.516	50.516	-0.10558								0	0	0	0.014413	1	5077	5077		145.16	73.778	1				35705	4169	24476	24528	41227	41227					0.1126349675369056
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MSMS	OPSCC_40_ClassI_Rep-2	5	523.3235473632812	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.233	1	49.953	49.453	50.453	-0.27977								0	0	0	0.035202	1	5081	5081		115.49	52.516	1				35706	4169	24476	24528	41228	41228					0.1126349675369056
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MSMS	OPSCC_40_ClassI_Rep-2	5	523.3238525390625	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.304	1	50.024	49.524	50.524	-0.27977								0	0	0	0.042231	1	5092	5092		112.41	45.982	1				35707	4169	24476	24528	41229	41229					0.1126349675369056
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MSMS	OPSCC_40_ClassI_Rep-2	5	523.3240356445312	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.387	1	50.107	49.607	50.607	-0.27977								0	0	0	0.05455	1	5105	5105		107.01	57.566	1				35708	4169	24476	24528	41230	41230					0.1126349675369056
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MSMS	OPSCC_40_ClassI_Rep-3	6	523.3238525390625	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.081	1	49.9	49.4	50.4	-0.18071								0	0	0	0.024584	1	5063	5063		124.08	58.277	1				35709	4169	24476	24528	41231	41231					0.1126349675369056
KTNVPVKLF	9	Unmodified	_KTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MSMS	OPSCC_40_ClassI_Rep-3	6	523.3232421875	2	523.32386	1044.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.159	1	49.978	49.478	50.478	-0.18071								0	0	0	0.059705	1	5075	5075		104.75	25.296	1				35710	4169	24476	24528	41232	41232					0.1126349675369056
KTPAKYYS	8	Unmodified	_KTPAKYYS_					0	0	0		ENST00000369002.8_1_6:108246088-108279112:-|nuORF	ENST00000369002.8_1_6:108246088-108279112:-|nuORF	ENST00000369002.8_1_6:108246088-108279112:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.25244140625	2	479.255643	956.496732	-0.14539	-6.9678E-05	-2.7923	-0.0013382	-2.9377	-0.0014079	479.25422093509053	35.812	1.8846	35.812	35.235	37.12	0					73	50	2	0	0	0	0.027866	1	2765	2765		44.117	0	1	231960			35711	12911	24477	24529	41233	41233					0.016743825231856135
KTPAVTTRT	9	Unmodified	_KTPAVTTRT_					0	0	0		chr10:47468906-47474305|140|33.24|0.28|6.9|-|1|ANXA8,ANXA8|1;chr10:47468906-47473970|297|35.1|0.57|5.95|-|1|ANXA8,ANXA8|1;chr10:47468906-47469117|122|44.34|0.54|6.37|-|1|ANXA8,None|1	chr10:47468906-47474305|140|33.24|0.28|6.9|-|1|ANXA8,ANXA8|1	chr10:47468906-47474305|140|33.24|0.28|6.9|-|1|ANXA8,ANXA8|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7937316894531	2	487.785099	973.555644	-0.82901	-0.00040438	0.82343	0.00040166	-0.005577	-2.7204E-06	487.78534109423015	28.12	0.52238	28.12	27.884	28.406	0					23	12	2	0	0	0	0.024495	1	1635	1635		42.396	23.293	1	351180			35712	301	24478	24530	41234	41234					0.06780858817523949
KTPCTGKRKVM	11	Unmodified	_KTPCTGKRKVM_					0	0	0			REV__ENST00000412461.2_1_22:19043875-19044022:+|nuORF	REV__ENST00000412461.2_1_22:19043875-19044022:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.9033508300781	3	416.902021	1247.68423	0.053622	2.2355E-05	1.4004	0.00058385	1.4541	0.00060621	416.90299892715046	31.941	0.93558	31.756	31.321	32.257	-0.18503					73	21	4	0	0	0	0.9703	1	2184	2184		43.419	1.0805	1	2656200	+		35713	31997	24479	24531	41235	41235					0.07029754464588223
KTPDKVNHA	9	Unmodified	_KTPDKVNHA_					0	0	0		ENST00000527715.5_1_15:79214474-79217794:-|nuORF;ENST00000533777.5_1_15:79214474-79223953:-|nuORF;ENST00000534237.5_1_15:79214474-79224366:-|nuORF;ENSG00000103811|ENST00000220166|CTSH	ENST00000527715.5_1_15:79214474-79217794:-|nuORF	ENST00000527715.5_1_15:79214474-79217794:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3239440917969	2	505.274898	1008.53524	0.12041	6.0839E-05	0.92729	0.00046854	1.0477	0.00052937	505.776774977004	79.113	0.36993	78.882	78.694	79.064	-0.23141					10	8	2	0	0	0	0.024484	1	9483	9483		23.523	0	1	125270			35714	2529	24480	24532	41236	41236					0.031316881577026834
KTPEEIRKTF	10	Unmodified	_KTPEEIRKTF_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.9033508300781	3	416.903072	1247.68739	-0.062651	-2.6119E-05	-0.75286	-0.00031387	-0.81551	-0.00033999	416.9030304367675	31.9	0.9584	31.664	31.299	32.258	-0.23666					72	22	5	0	0	0	0.22694	4	2165	2154;2165;2178;2192		117.71	52.548	1	2886700			35715	3303	24481	24533	41237;41238;41239;41240	41238					0.07345044114595112
KTPEEIRKTF	10	Unmodified	_KTPEEIRKTF_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.90338134765625	3	416.903072	1247.68739	0.053622	2.2355E-05	-1.1216	-0.0004676	-1.068	-0.00044524	416.90299892715046	31.941	0.93558	31.756	31.321	32.257	-0.18503					73	21	4	0	0	0	0.3202	3	2158	2149;2158;2171		106.88	54.713	1	2656200			35716	3303	24481	24533	41241;41242;41243	41242					0.07345044114595112
KTPEEIRKTF	10	Unmodified	_KTPEEIRKTF_					0	0	0		ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1	ENSG00000113558|ENST00000353411|SKP1	ENSG00000113558|ENST00000353411|SKP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.9032897949219	3	416.903072	1247.68739	-0.15041	-6.2705E-05	-1.1397	-0.00047515	-1.2901	-0.00053785	416.9030914349004	31.9	0.98708	31.742	31.336	32.323	-0.15772					66	23	4	0	0	0	0.14188	3	2133	2133;2146;2159		128.35	59.502	1	2889600			35717	3303	24481	24533	41244;41245;41246	41244					0.07345044114595112
KTPEQLLEHKK	11	Unmodified	_KTPEQLLEHKK_					0	0	0		nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.281005859375	3	450.92951	1349.7667	0.3089	0.00013929	-2.2595	-0.0010189	-1.9506	-0.00087958	451.2627811287507	50.971	0.25484	50.971	50.775	51.03	0					8	6	2	0	0	0	0.024846	1	5383	5383		8.0344	0	1	62903			35718	6213	24482	24534	41247	41247					0.10580691068707893
KTPERLKS	8	Unmodified	_KTPERLKS_					0	0	0			REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7878112792969	2	479.787641	957.56073	-0.12661	-6.0744E-05	-0.74567	-0.00035776	-0.87228	-0.00041851	479.7872742862401	22.42	0.65431	22.345	22.13	22.784	-0.075296					40	13	5	0	0	0	0.96769	1	775	775		42.396	0	1	1130200	+		35719	20365	24483	24535	41248	41248					0.08025162680144149
KTPITLFRMA	10	Unmodified	_KTPITLFRMA_					0	0	0		nc|ENSG00000144152|Q53RD9-4|FBLN7;nc|ENSG00000144152|Q53RD9-2|FBLN7;ENSG00000144152|ENST00000331203|FBLN7;nc|ENSG00000144152|Q53RD9-3|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3438720703125	2	589.341726	1176.6689	-0.57069	-0.00033633	2.3802	0.0014028	1.8095	0.0010664	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0616	1	11688	11688		37.812	10.764	1	17343000			35720	5719	24484	24536	41249	41249					0.08763210939059718
KTPKERTL	8	Unmodified	_KTPKERTL_					0	0	0		ENSG00000121895|ENST00000381938|TMEM156	ENSG00000121895|ENST00000381938|TMEM156	ENSG00000121895|ENST00000381938|TMEM156	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.76129150390625	2	486.795466	971.57638	-0.20026	-9.7483E-05	4.2468	0.0020673	4.0466	0.0019698	486.79714067242406	59.284	0.62885	59.37	59.063	59.692	0.085682					42	16	3	0	0	0	0.027866	1	6658	6658		49.442	13.823	1	4054700			35721	3894	24485	24537	41250	41250					0.08945449197187827
KTPKYFKP	8	Unmodified	_KTPKYFKP_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2743835449219	2	504.797478	1007.5804	-0.88215	-0.00044531	-3.5208	-0.0017773	-4.4029	-0.0022226	504.7955802427179	26.721	0.53602	26.558	26.344	26.88	-0.16331					27	12	3	0	0	0	0.027866	1	1411	1411		24.203	4.206	1	196900			35722	4130	24486	24538	41251	41251					0.0769153869089223
KTPLGNIVAE	10	Unmodified	_KTPLGNIVAE_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|107|2|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|107|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2821044921875	2	521.300581	1040.58661	0.11599	6.0465E-05	-3.1777	-0.0016565	-3.0617	-0.0015961	521.2987041051967	22.267	0.23227	22.078	21.959	22.191	-0.18894					7	4	2	0	0	0	0.03519	1	773	773		20.947	0	1	40242	+		35723	36261	24487	24539	41252	41252					0.06794012131763338
KTPLSRGF	8	Unmodified	_KTPLSRGF_					0	0	0			REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF	REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.30059814453125	2	453.263802	904.513051	-0.48092	-0.00021798	0.47983	0.00021749	-0.0010885	-4.9336E-07	453.2639542503564	28.226	0.73842	27.981	27.463	28.202	-0.24524					26	17	2	0	0	0	0.027866	1	1591	1591		23.042	0	1	205330	+		35724	35768	24488	24540	41253	41253					0.056975084799546494
KTPLVDHFG	9	Unmodified	_KTPLVDHFG_					0	0	0		nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	nc|ENSG00000137509|P42785-2|PRCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.33135986328125	2	507.274367	1012.53418	-0.93086	-0.0004722	0.69775	0.00035395	-0.23311	-0.00011825	507.27247123468425	37.657	0.48526	37.657	37.45	37.936	0					46	13	5	0	0	0	0.024405	1	3090	3090		27.882	0	1	303270			35725	18315	24489	24541	41254	41254					0.028414737888056152
KTPMALTLL	9	Unmodified	_KTPMALTLL_					0	0	0		ENST00000530028.2_2_15:49171086-49171392:+|nuORF	ENST00000530028.2_2_15:49171086-49171392:+|nuORF	ENST00000530028.2_2_15:49171086-49171392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.3011474609375	2	494.298996	986.583439	-0.25602	-0.00012655	3.693	0.0018255	3.437	0.0016989	494.30075389334326	96.309	2.5046	96.153	95.62	98.125	-0.15646					207	58	7	0	0	0	0.82115	1	11910	11910		37.812	2.1932	1	35328000			35726	16220	24490	24542	41255	41255					0.08961045753392227
KTPMPPISSVL	11	Unmodified	_KTPMPPISSVL_					0	0	0		nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10	nc|ENSG00000086827|O43264-2|ZW10	nc|ENSG00000086827|O43264-2|ZW10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	585.311767578125	2	585.333567	1168.65258	-1.0775	-0.00063071	-1.0221	-0.00059827	-2.0996	-0.001229	585.3329888015036	50.058	0.14239	49.907	49.817	49.96	-0.1512					5	3	2	0	0	0	0.024778	1	5177	5177		36.447	0	1	55812			35727	1826	24491	24543	41256	41256					0.07500084982279986
KTPNVQQGALF	11	Unmodified	_KTPNVQQGALF_					0	0	0			REV__nc|ENSG00000136273|O60921-2|HUS1	REV__nc|ENSG00000136273|O60921-2|HUS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.8312377929688	2	601.830037	1201.64552	-0.38369	-0.00023091	3.6831	0.0022166	3.2994	0.0019857	601.8321899664736	72.568	0.68478	72.291	72.028	72.713	-0.2769					40	15	4	0	0	0	0.56526	1	8520	8520		54.722	0	1	641700	+		35728	23644	24492	24544	41257	41257					0.05276488426079595
KTPPPRPSP	9	Unmodified	_KTPPPRPSP_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7830810546875	2	488.782359	975.550165	0.16432	8.0315E-05	-0.88068	-0.00043046	-0.71637	-0.00035015	488.7818646070015	40.311	1.7687	40.311	39.627	41.396	0					137	49	4	0	0	0	0.50848	1	3547	3547		58.782	3.2778	1	10770000			35729	7768	24493	24545	41258	41258					0.06141180025701942
KTPPPRPSP	9	Unmodified	_KTPPPRPSP_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.78326416015625	2	488.782359	975.550165	0.38975	0.0001905	-0.99287	-0.0004853	-0.60312	-0.0002948	488.78179146163836	40.475	1.8011	40.363	39.64	41.441	-0.11222					128	49	4	0	0	0	0.72875	1	3553	3553		44.117	0	1	9956000			35730	7768	24493	24545	41259	41259					0.06141180025701942
KTPQVLLI	8	Unmodified	_KTPQVLLI_					0	0	0			REV__ENSG00000100632|ENST00000557016|ERH	REV__ENSG00000100632|ENST00000557016|ERH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.1558532714844	2	456.299853	910.585153	-0.021581	-9.8472E-06	2.3705	0.0010817	2.3489	0.0010718	456.30072395656566	39.18	1.0847	38.954	38.771	39.856	-0.2257					75	28	4	0	0	0	0.027866	1	3403	3403		10.265	3.9526	1	344620	+		35731	21139	24494	24546	41260	41260					0.1262842283365444
KTPSGIQPL	9	Unmodified	_KTPSGIQPL_					0	0	0		ENST00000465519.5_1_3:195925313-195934370:-|nuORF	ENST00000465519.5_1_3:195925313-195934370:-|nuORF	ENST00000465519.5_1_3:195925313-195934370:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7770690917969	2	470.776742	939.538931	0.057645	2.7138E-05	0.33427	0.00015737	0.39192	0.00018451	470.7767079758793	61.86	0.67884	61.646	61.334	62.012	-0.21375					44	16	4	0	0	0	0.1158	1	6932	6932		107.01	13.001	1	1217100			35732	14785	24495	24547	41261	41261					0.0667435793156983
KTPSGIQPL	9	Unmodified	_KTPSGIQPL_					0	0	0		ENST00000465519.5_1_3:195925313-195934370:-|nuORF	ENST00000465519.5_1_3:195925313-195934370:-|nuORF	ENST00000465519.5_1_3:195925313-195934370:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	470.776742	939.538931	-0.67768	-0.00031904	1.1122	0.00052361	0.43456	0.00020458	470.7770728124088	61.812	0.67417	61.634	61.329	62.003	-0.17781	-0.022204	0.00034533	NaN	107.01	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1304000			35733	14785	24495	24547							0.0667435793156983
KTPSGLLIN	9	Unmodified	_KTPSGLLIN_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.76129150390625	2	471.784567	941.554582	-0.075948	-3.5831E-05	-0.24036	-0.0001134	-0.31631	-0.00014923	471.78438427455404	32.359	0.53128	32.371	32.063	32.594	0.011799					28	13	3	0	0	0	0.024397	1	2241	2241		56.721	12.604	1	805020			35734	3667	24496	24548	41262	41262					0.0814664444861819
KTPSGLLIN	9	Unmodified	_KTPSGLLIN_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.761474609375	2	471.784567	941.554582	0.08861	4.1805E-05	-0.28395	-0.00013396	-0.19534	-9.2157E-05	471.7841964966568	32.182	0.54066	32.245	31.961	32.502	0.062885					23	13	2	0	0	0	0.024374	1	2182	2182		40.778	16.259	1	780450			35735	3667	24496	24548	41263	41263					0.0814664444861819
KTPSGLLIN	9	Unmodified	_KTPSGLLIN_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.784567	941.554582	-0.49149	-0.00023188	-0.24834	-0.00011716	-0.73983	-0.00034904	471.7845869621291	32.436	0.4832	32.278	32.121	32.605	-0.15772	-0.068401	1.1598E-05	NaN	56.721	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186450			35736	3667	24496	24548							0.0814664444861819
KTPSLQYN	8	Unmodified	_KTPSLQYN_					0	0	0			REV__ENSG00000104320|ENST00000265433|NBN	REV__ENSG00000104320|ENST00000265433|NBN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.96142578125	2	475.750724	949.486896	0.56723	0.00026986	-3.7336	-0.0017762	-3.1663	-0.0015064	475.74988374234346	63.979	0.83121	63.728	63.156	63.987	-0.25141					29	22	2	0	0	0	0.027866	1	7448	7448		30.318	21.135	1	215030	+		35737	21432	24497	24549	41264	41264					0.010131945178045498
KTPSNRDL	8	Unmodified	_KTPSNRDL_					0	0	0			REV__ENSG00000157890|ENST00000395614|MEGF11	REV__ENSG00000157890|ENST00000395614|MEGF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.753173828125	2	465.753798	929.493044	0.18836	8.7728E-05	-1.17	-0.00054494	-0.98167	-0.00045721	465.7532151646166	37.244	0.50787	37.181	37.014	37.522	-0.063385					15	13	2	0	0	0	0.027866	1	3051	3051		16.473	3.0191	1	160370	+		35738	25157	24498	24550	41265	41265					0.025477127493331864
KTPSNRDL	8	Unmodified	_KTPSNRDL_					0	0	0			REV__ENSG00000157890|ENST00000395614|MEGF11	REV__ENSG00000157890|ENST00000395614|MEGF11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.753798	929.493044	0.18409	8.5738E-05	-1.4316	-0.00066677	-1.2475	-0.00058103	465.7533927900914	37.423	0.4345	37.423	37.233	37.667	0	0.080094	1.3825E-05	NaN	16.473	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136690	+		35739	25157	24498	24550							0.025477127493331864
KTPSNRDL	8	Unmodified	_KTPSNRDL_					0	0	0			REV__ENSG00000157890|ENST00000395614|MEGF11	REV__ENSG00000157890|ENST00000395614|MEGF11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.753798	929.493044	0.75546	0.00035186	-1.6501	-0.00076856	-0.89468	-0.0004167	465.75315572355004	37.392	0.37418	37.424	37.226	37.6	0.032269	0.08156	-0.00018976	NaN	16.473	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145910	+		35740	25157	24498	24550							0.025477127493331864
KTPTAFIIP	9	Unmodified	_KTPTAFIIP_					0	0	0			REV__ENSG00000115944|ENST00000234301|COX7A2L	REV__ENSG00000115944|ENST00000234301|COX7A2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7502746582031	2	494.29731	986.580068	-0.35308	-0.00017453	-4.276	-0.0021136	-4.6291	-0.0022881	494.29521351512426	45.666	0.75166	45.57	45.326	46.078	-0.096649					62	20	4	0	0	0	0.024397	1	4360	4360		47.657	13.485	1	2850300	+		35741	22243	24499	24551	41266	41266					0.08624118971033568
KTPTNEPIP	9	Unmodified	_KTPTNEPIP_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7715759277344	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	0.75397	1	13145	13145		42.396	6.7778	1	3882100	+		35742	28013	24500	24552	41267	41267					0.030817502063200664
KTPTQSLP	8	Unmodified	_KTPTQSLP_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8815002441406	2	436.247818	870.481082	2.4757	0.00108	-2.455	-0.001071	0.020701	9.031E-06	436.24665559464455	24.389	0.52039	24.209	23.983	24.504	-0.18089					19	11	2	0	0	0	0.027866	1	1027	1027		42.396	5.237	1	375300			35743	3756	24501	24553	41268	41268					0.04066096006135922
KTPTQSLP	8	Unmodified	_KTPTQSLP_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	436.247818	870.481082	-0.17719	-7.73E-05	0.11025	4.8095E-05	-0.066946	-2.9205E-05	436.2477227507148	24.531	0.45866	24.316	24.134	24.592	-0.2151	0.09523	0.00084112	NaN	42.396	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318080			35744	3756	24501	24553							0.04066096006135922
KTPTQSLP	8	Unmodified	_KTPTQSLP_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	436.247818	870.481082	-0.098559	-4.2996E-05	0.45091	0.00019671	0.35236	0.00015371	436.24792270358887	24.313	0.50986	24.138	23.873	24.383	-0.17484	-0.083065	0.0011384	NaN	42.396	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358130			35745	3756	24501	24553							0.04066096006135922
KTPVENPLN	9	Unmodified	_KTPVENPLN_					0	0	0		nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	nc|ENSG00000165494|O94913|PCF11	nc|ENSG00000165494|O94913|PCF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.24029541015625	2	506.277106	1010.53966	-0.59198	-0.00029971	0.19466	9.8551E-05	-0.39732	-0.00020116	506.2768699968946	30.478	0.49983	30.486	30.247	30.746	0.0086708					18	11	2	0	0	0	0.024397	1	1955	1955		31.53	10.583	1	143540			35746	7420	24502	24554	41269	41269					0.03481152580604885
KTPVKKKAR	9	Unmodified	_KTPVKKKAR_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2488403320312	2	528.356025	1054.6975	-0.082598	-4.3641E-05	-0.19241	-0.00010166	-0.27501	-0.0001453	528.3556634810302	32.832	0.52707	32.64	32.417	32.944	-0.19261					25	12	3	0	0	0	0.024539	1	2283	2283		5.5578	0	1	204950			35747	7808	24503	24555	41270	41270					0.17233696630501072
KTPVQLDL	8	Unmodified	_KTPVQLDL_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L;ENST00000561203.1_1_15:49308706-49309212:-|nuORF	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.7511291503906	2	457.271293	912.528032	-0.70108	-0.00032058	-3.3585	-0.0015358	-4.0596	-0.0018563	457.2695182287927	30.602	0.75908	30.423	29.866	30.625	-0.17818					19	17	2	0	0	0	0.027866	1	1884	1884		12.207	0	1	107420			35748	5251	24504	24556	41271	41271					0.06826955557278325
KTPYEKNVR	9	Unmodified	_KTPYEKNVR_					0	0	0		ENSG00000205846|ENST00000382073|CLEC6A;nc|ENSG00000205846|Q6EIG7-2|CLEC6A	ENSG00000205846|ENST00000382073|CLEC6A	ENSG00000205846|ENST00000382073|CLEC6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2301025390625	2	567.81693	1133.61931	-0.66645	-0.00037842	0.49635	0.00028184	-0.17009	-9.6582E-05	567.8169572478228	38.244	0.49846	38.065	37.844	38.342	-0.17929					33	14	4	0	0	0	0.024427	1	3156	3156		26.693	0	1	682410			35749	10449	24505	24557	41272	41272					0.05784219254610434
KTQATLKP	8	Unmodified	_KTQATLKP_					0	0	0		nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000545200.5_1_12:6666161-6669478:-|nuORF	nc|ENSG00000111641|P46087-2|NOP2	nc|ENSG00000111641|P46087-2|NOP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.7613220214844	2	443.77146	885.528367	0.035752	1.5866E-05	0.7683	0.00034095	0.80405	0.00035682	443.77177569071677	23.926	0.31158	23.71	23.554	23.866	-0.2151					10	6	2	0	0	0	0.027866	1	1018	1018		20.947	0	1	56082			35750	3128	24506	24558	41273	41273					0.08102375277144347
KTQATLKP	8	Unmodified	_KTQATLKP_					0	0	0		nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000545200.5_1_12:6666161-6669478:-|nuORF	nc|ENSG00000111641|P46087-2|NOP2	nc|ENSG00000111641|P46087-2|NOP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.77146	885.528367	2.1348	0.00094736	1.7166	0.00076176	3.8514	0.0017091	443.7723278176616	23.841	0.35209	23.652	23.444	23.796	-0.18848	-0.029173	0.000586	NaN	40.778	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51832			35751	3128	24506	24558							0.08102375277144347
KTQDVPVPK	9	Unmodified	_KTQDVPVPK_					0	0	0			REV__ENSG00000133997|ENST00000256379|MED6	REV__ENSG00000133997|ENST00000256379|MED6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3131103515625	2	506.295299	1010.57605	-0.29437	-0.00014904	-0.83804	-0.0004243	-1.1324	-0.00057333	506.294710781132	64.224	0.73927	63.972	63.765	64.504	-0.25193					30	19	3	0	0	0	0.021219	1	7538	7538		80.455	12.961	1	673310	+		35752	23408	24507	24559	41274	41274					0.07118029477328491
KTQDYVVGF	9	Unmodified	_KTQDYVVGF_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9;nc|ENSG00000115514|O14530-2|TXNDC9;ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7718505859375	2	528.771657	1055.52876	-1.0533	-0.00055695	0.86885	0.00045943	-0.18443	-9.7524E-05	528.7721111083871	55.707	1.2869	55.55	55.244	56.53	-0.15656					70	33	4	0	0	0	0.22902	1	5996	5996		85.161	38.394	1	2892700			35753	3456	24508	24560	41275	41275					0.00321750206330762
KTQDYVVGF	9	Unmodified	_KTQDYVVGF_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9;nc|ENSG00000115514|O14530-2|TXNDC9;ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7716674804688	2	528.771657	1055.52876	-0.32402	-0.00017134	-0.0090528	-4.7869E-06	-0.33308	-0.00017612	528.7717097272682	55.784	1.1916	55.567	55.237	56.429	-0.21607					48	31	2	0	0	0	0.26413	2	6011	6000;6011		80.455	32.539	1	2733000			35754	3456	24508	24560	41276;41277	41277					0.00321750206330762
KTQDYVVGF	9	Unmodified	_KTQDYVVGF_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9;nc|ENSG00000115514|O14530-2|TXNDC9;ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7715454101562	2	528.771657	1055.52876	-1.0394	-0.00054962	0.85498	0.00045209	-0.18445	-9.7533E-05	528.7719662553438	55.767	0.83743	55.551	55.201	56.038	-0.21551					45	22	3	0	0	0	0.42604	1	6000	6000		64.207	14.183	1	2379700			35755	3456	24508	24560	41278	41278					0.00321750206330762
KTQEPLQL	8	Unmodified	_KTQEPLQL_					0	0	0		ENSG00000184005|ENST00000328299|ST6GALNAC3;nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7745361328125	2	478.7742	955.533846	-0.38003	-0.00018195	0.34812	0.00016667	-0.031903	-1.5274E-05	478.7743026870801	31.337	1.6412	31.152	30.702	32.343	-0.18503					91	39	4	0	0	0	0.27613	1	2061	2061		122.18	11.839	1	9351300			35756	9299	24509	24561	41279	41279					0.054300540689382615
KTQFKKLLD	9	Unmodified	_KTQFKKLLD_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7922973632812	2	560.839874	1119.66519	-0.085728	-4.808E-05	-2.141	-0.0012008	-2.2268	-0.0012489	560.8387780124089	52.081	0.57243	51.897	51.741	52.314	-0.18405					25	14	3	0	0	0	0.024447	1	5379	5379		32.812	0	1	284100	+		35757	22830	24510	24562	41280	41280					0.11014864436833705
KTQGPLDRG	9	Unmodified	_KTQGPLDRG_					0	0	0			REV__ENST00000368409.7_1_1:155036226-155036403:+|nuORF	REV__ENST00000368409.7_1_1:155036226-155036403:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	486.267073	970.519593	-1.2303	-0.00059823	-2.5825	-0.0012558	-3.8127	-0.001854	486.26580074032745	39.912	1.2146	39.935	39.135	40.349	0.023502					57	33	3	0	0	0	0.023837	1	3472	3472		45.972	7.1661	1	862310	+		35758	31052	24511	24563	41281	41281					0.03315401640657001
KTQGPRALW	9	Unmodified	_KTQGPRALW_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.801025390625	2	528.801083	1055.58761	-1.3585	-0.00071837	1.3075	0.00069143	-0.050944	-2.6939E-05	528.8016312413462	38.699	0.89628	38.534	38.184	39.081	-0.16458					39	24	2	0	0	0	0.50848	1	3209	3209		58.782	10.822	1	2797900			35759	7240	24512	24564	41282	41282					0.0620427129131258
KTQGPRALW	9	Unmodified	_KTQGPRALW_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.8005981445312	2	528.801083	1055.58761	-0.13237	-6.9997E-05	0.081472	4.3083E-05	-0.050897	-2.6914E-05	528.8009809803535	38.713	0.62849	38.488	38.143	38.771	-0.2257					31	16	2	0	0	0	0.35646	1	3198	3198		68.787	17.594	1	2390300			35760	7240	24512	24564	41283	41283					0.0620427129131258
KTQGPRALW	9	Unmodified	_KTQGPRALW_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	528.801083	1055.58761	-1.0052	-0.00053155	1.0227	0.0005408	0.017502	9.2549E-06	528.8015017366374	38.675	0.92162	38.454	38.153	39.074	-0.22148	-0.0381	0.00024608	NaN	68.787	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2295600			35761	7240	24512	24564							0.0620427129131258
KTQHEILRQV	10	Unmodified	_KTQHEILRQV_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	417.8589782714844	3	417.910449	1250.70952	-0.018266	-7.6336E-06	0.15288	6.3891E-05	0.13462	5.6257E-05	417.9105713135264	32.2	0.94728	32.2	31.509	32.457	0					49	23	4	0	0	0	0.03519	1	2193	2193		20.03	4.0237	1	547190			35762	1535	24513	24565	41284	41284					0.09419268583019402
KTQHEILRQV	10	Unmodified	_KTQHEILRQV_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	417.910449	1250.70952	-0.1769	-7.3927E-05	0.75191	0.00031423	0.57501	0.0002403	417.910778205066	31.964	0.67566	31.976	31.624	32.299	0.011799	-0.11185	0.00037129	NaN	20.03	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341960			35763	1535	24513	24565							0.09419268583019402
KTQISESTL	9	Unmodified	_KTQISESTL_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.247802734375	2	503.774396	1005.53424	-0.61539	-0.00031002	-0.62045	-0.00031257	-1.2358	-0.00062258	503.7731612361831	60.803	0.22886	60.803	60.73	60.958	0					7	5	2	0	0	0	0.024484	1	7035	7035		17.468	0	1	43787	+		35764	23834	24514	24566	41285	41285					0.03169428998137391
KTQISESTL	9	Unmodified	_KTQISESTL_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.774396	1005.53424	-0.092967	-4.6834E-05	-7.358	-0.0037068	-7.4509	-0.0037536	503.77016212014786	61.298	0.48758	61.092	60.772	61.259	-0.20599	0.1137	-0.0014866	NaN	28.081	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102640	+		35765	23834	24514	24566							0.03169428998137391
KTQISESTL	9	Unmodified	_KTQISESTL_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.774396	1005.53424	-0.84347	-0.00042492	-9.5359	-0.004804	-10.379	-0.0052289	504.2716245431563	61.297	0.61547	61.04	60.848	61.464	-0.25725	0.061269	-0.003681	NaN	28.081	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95353	+		35766	23834	24514	24566							0.03169428998137391
KTQKKKVLG	9	Unmodified	_KTQKKKVLG_					0	0	0		ENST00000420969.1_1_2:162357550-162357775:-|nuORF	ENST00000420969.1_1_2:162357550-162357775:-|nuORF	ENST00000420969.1_1_2:162357550-162357775:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3114624023438	2	515.342584	1028.67061	-0.10532	-5.4275E-05	-0.82826	-0.00042684	-0.93358	-0.00048111	515.3425580830547	20.075	0.18781	19.907	19.767	19.955	-0.16774					6	3	2	0	0	0	0.024374	1	496	496		58.782	14.665	1	15184			35767	13985	24515	24567	41286	41286					0.15742588019315917
KTQKVQDF	8	Unmodified	_KTQKVQDF_					0	0	0		ENSG00000171451|ENST00000310045|DSEL;DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.30010986328125	2	497.271824	992.529095	-0.30201	-0.00015018	0.33126	0.00016473	0.029244	1.4542E-05	497.2717586834601	33.517	0.51822	33.286	33.036	33.554	-0.23107					29	12	4	0	0	0	0.027866	1	2368	2368		60.972	3.1607	1	252090			35768	8150	24516	24568	41287	41287					0.03253169926188093
KTQLTSML	8	Oxidation (M)	_KTQLTSM(Oxidation (M))L_		KTQLTSM(1)L		KTQLTSM(56)L	0	0	1		nc|ENSG00000165688|Q10713-2|PMPCA;PMPCA|p.N438Y|1|0.13|ENSG00000165688|chr9:136421880-136421880|A/T|missense_variant;ENSG00000165688|ENST00000371717|PMPCA	nc|ENSG00000165688|Q10713-2|PMPCA	nc|ENSG00000165688|Q10713-2|PMPCA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.25457763671875	2	469.254785	936.495018	0.5461	0.00025626	-3.8643	-0.0018133	-3.3182	-0.0015571	469.25282847973085	76.86	0.73834	76.86	76.556	77.295	0					30	17	2	0	0	0	0.845	1	9480	9480		55.504	7.8469	1	1038200			35769	18468	24517	24569	41288	41288		581			0.02423005442926751
KTQPKEREL	9	Unmodified	_KTQPKEREL_					0	0	0			REV__nc|ENSG00000108469|O94762-4|RECQL5	REV__nc|ENSG00000108469|O94762-4|RECQL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.8234252929688	2	564.822212	1127.62987	0.12303	6.9488E-05	4.1136	0.0023234	4.2366	0.0023929	564.8242226178919	102.17	0.8551	102	101.74	102.59	-0.17178					52	20	3	0	0	0	0.75397	1	12688	12688		42.396	4.5846	1	133500	+		35770	21738	24518	24570	41289	41289					0.07116201909047959
KTQTFFPFN	9	Unmodified	_KTQTFFPFN_					0	0	0			REV__nc|ENSG00000179776|P33151-2|CDH5	REV__nc|ENSG00000179776|P33151-2|CDH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.2996215820312	2	565.287474	1128.5604	-1.1466	-0.00064813	1.2239	0.00069188	0.077392	4.3749E-05	565.2880710382749	74.518	0.9108	74.527	74.18	75.091	0.0096512					62	21	4	0	0	0	0.024374	1	9056	9056		40.778	5.6261	1	1891000	+		35771	27292	24519	24571	41290	41290					0.001257429602674165
KTQTIIREG	9	Unmodified	_KTQTIIREG_					0	0	0			REV__nc|ENSG00000114302|P13861-2|PRKAR2A	REV__nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.302490234375	2	523.303655	1044.59276	0.65321	0.00034183	-0.73769	-0.00038603	-0.084471	-4.4204E-05	523.3031277895468	18.28	0.69014	18.124	17.805	18.495	-0.15637					31	13	4	0	0	0	0.14181	2	282	282;292		101.25	29.386	1	656520	+		35772	36578	24520	24572	41291;41292	41291					0.07224530363282611
KTQVKCRKI	9	Unmodified	_KTQVKCRKI_					0	0	0		ENST00000588464.5_1_19:11462501-11464249:+|nuORF;nc|ENSG00000183401|P0C7I6-7|CCDC159;ENSG00000183401|ENST00000458408|CCDC159	ENST00000588464.5_1_19:11462501-11464249:+|nuORF	ENST00000588464.5_1_19:11462501-11464249:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3262329101562	2	552.339518	1102.66448	-0.31122	-0.0001719	2.6153	0.0014445	2.304	0.0012726	552.3410524104347	53.981	0.14711	53.784	53.68	53.827	-0.19739					5	4	2	0	0	0	0.024523	1	5697	5697		15.642	0	1	403380			35773	9225	24521	24573	41293	41293					0.11725746516140134
KTQVKQPKS	9	Unmodified	_KTQVKQPKS_					0	0	0		HAL1M8_dup1066|chr8:143743399-143743515:-|1.302154487809272|0.3402307778492503|1.94|518.0|4|3|sense	HAL1M8_dup1066|chr8:143743399-143743515:-|1.302154487809272|0.3402307778492503|1.94|518.0|4|3|sense	HAL1M8_dup1066|chr8:143743399-143743515:-|1.302154487809272|0.3402307778492503|1.94|518.0|4|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8001098632812	2	522.314023	1042.61349	-0.70308	-0.00036723	1.8323	0.00095702	1.1292	0.00058979	522.3148079881822	48.482	0.70512	48.329	48.159	48.864	-0.15289					37	19	3	0	0	0	0.024495	1	4947	4947		19.997	0	1	447750			35774	17704	24522	24574	41294	41294					0.0938912074293512
KTRAILCL	8	Unmodified	_KTRAILCL_					0	0	0			REV__LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|37|3|anti-sense	REV__LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|37|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2618408203125	2	459.28368	916.552807	-0.35683	-0.00016389	1.475	0.00067745	1.1182	0.00051356	459.28433042955015	28.103	0.57918	28.098	28.003	28.582	-0.0042019					15	13	2	0	0	0	0.027866	1	1611	1611		21.96	0	1	139640	+		35775	36335	24523	24575	41295	41295					0.09119312158998127
KTRATCQPR	9	Unmodified	_KTRATCQPR_					0	0	0		ENST00000243776.10_1_2:220403697-220404108:-|nuORF	ENST00000243776.10_1_2:220403697-220404108:-|nuORF	ENST00000243776.10_1_2:220403697-220404108:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.8094482421875	2	530.78765	1059.56075	-0.65262	-0.0003464	1.3448	0.00071382	0.69221	0.00036741	531.2898415741433	17.666	0.2491	17.459	17.315	17.564	-0.20669					7	4	2	0	0	0	0.024261	1	201	201		64.207	6.396	1	12780			35776	11294	24524	24576	41296	41296					0.03334839408466905
KTRCLMVLGL	10	Unmodified	_KTRCLMVLGL_					0	0	0		ENST00000400546.5_1_21:22849738-22881204:+|nuORF	ENST00000400546.5_1_21:22849738-22881204:+|nuORF	ENST00000400546.5_1_21:22849738-22881204:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.330810546875	2	567.330304	1132.64606	-0.57331	-0.00032526	-0.20622	-0.000117	-0.77953	-0.00044225	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.1129	1	10810	10810		17.365	0.89182	1	5699600			35777	13660	24525	24577	41297	41297					0.08503868549951221
KTRDAVDL	8	Unmodified	_KTRDAVDL_					0	0	0			REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.22674560546875	2	459.256174	916.497795	-0.29042	-0.00013338	0.50652	0.00023262	0.21611	9.9248E-05	459.25623785802543	27.615	0.59793	27.615	27.286	27.884	0					21	15	2	0	0	0	0.027866	1	1489	1489		37.159	6.6555	1	245820	+		35778	20893	24526	24578	41298	41298					0.036205968920739906
KTRDAVDL	8	Unmodified	_KTRDAVDL_					0	0	0			REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	459.256174	916.497795	-0.59465	-0.0002731	0.58972	0.00027083	-0.0049386	-2.2681E-06	459.2566545026385	27.185	0.5379	27.266	26.996	27.534	0.081293	-0.20518	0.00014069	NaN	29.15	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158120	+		35779	20893	24526	24578							0.036205968920739906
KTRDDWLVSW	10	Unmodified	_KTRDDWLVSW_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.8912048339844	3	435.891055	1304.65134	-0.43933	-0.0001915	0.36845	0.00016061	-0.070871	-3.0892E-05	435.8912150777191	65.206	1.3061	64.971	64.568	65.874	-0.2345					81	31	4	0	0	0	0.60734	3	7419	7419;7429;7441		76.17	12.743	1	5214000			35780	10867	24527	24579	41299;41300;41301	41299					0.01119586937738859
KTRDDWLVSW	10	Unmodified	_KTRDDWLVSW_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.8912658691406	3	435.891055	1304.65134	-1.1567	-0.00050422	1.0435	0.00045487	-0.1132	-4.9343E-05	435.89148158058674	65.16	1.187	64.957	64.617	65.804	-0.20254					86	28	4	0	0	0	0.67616	2	7458	7422;7458		68.846	13.762	1	5731800			35781	10867	24527	24579	41302;41303	41303					0.01119586937738859
KTRDDWLVSW	10	Unmodified	_KTRDDWLVSW_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.89105224609375	3	435.891055	1304.65134	-0.079551	-3.4676E-05	0.01359	5.9236E-06	-0.065961	-2.8752E-05	435.8910472316007	65.217	1.2589	64.966	64.626	65.885	-0.25112					87	30	4	0	0	0	0.811	1	7449	7449		59.931	14.023	1	4936400			35782	10867	24527	24579	41304	41304					0.01119586937738859
KTRELFIY	8	Unmodified	_KTRELFIY_					0	0	0		nc|ENSG00000236320|P0C7P3-2|SLFN14;ENSG00000236320|ENST00000674182|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.776123046875	2	535.305667	1068.59678	-0.26304	-0.00014081	-1.4667	-0.00078516	-1.7298	-0.00092596	535.3045589049067	63.422	0.57879	63.195	62.933	63.512	-0.22773					25	14	2	0	0	0	0.027866	1	7136	7136		29.15	14.285	1	545180			35783	10738	24528	24580	41305	41305					0.06522619856991696
KTRGFGGI	8	Unmodified	_KTRGFGGI_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.1659240722656	2	418.24287	834.471186	0.24753	0.00010353	0.82144	0.00034356	1.069	0.00044709	418.24552337584123	22.964	0.83349	22.763	22.134	22.967	-0.20193					22	17	2	0	0	0	0.027866	1	869	869		24.203	10.427	1	14688			35784	16222	24529	24581	41306	41306					0.047329527914257596
KTRGFGGI	8	Unmodified	_KTRGFGGI_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	418.24287	834.471186	1.7181	0.00071858	-1.0002	-0.00041831	0.71794	0.00030027	418.2440276009348	23.202	0.40472	23.011	22.804	23.209	-0.19117	0.12404	-0.00031335	NaN	17.365	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43974			35785	16222	24529	24581							0.047329527914257596
KTRGTLLAL	9	Unmodified	_KTRGTLLAL_					0	0	0		ENSG00000137801|ENST00000260356|THBS1	ENSG00000137801|ENST00000260356|THBS1	ENSG00000137801|ENST00000260356|THBS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.28631591796875	2	486.813659	971.612765	-0.1786	-8.6943E-05	3.9485	0.0019222	3.7699	0.0018353	486.81543506117345	49.471	0.29992	49.32	49.22	49.52	-0.1512					10	7	2	0	0	0	0.024397	1	5104	5104		47.657	12.039	1	42950			35786	5154	24530	24582	41307	41307					0.12582326093888696
KTRGVCAMG	9	Unmodified	_KTRGVCAMG_					0	0	0			REV__ENST00000540175.1_1_12:20704556-20705942:+|nuORF	REV__ENST00000540175.1_1_12:20704556-20705942:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2324523925781	2	461.733497	921.452441	-0.22071	-0.00010191	-3.7411	-0.0017274	-3.9618	-0.0018293	461.73183968559584	25.211	0.88436	25.04	24.737	25.621	-0.17078					59	20	5	0	0	0	0.99229	1	1189	1189		21.96	0.25755	1	1128900	+		35787	19398	24531	24583	41308	41308					-0.01142668166301064
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.83056640625	2	553.832049	1105.64954	-0.41945	-0.00023231	-3.2453	-0.0017974	-3.6648	-0.0020297	553.8300910738014	101.35	0.94011	101.36	101.13	102.07	0.0090332					52	21	4	0	0	0	0.96322	1	12964	12964		27.882	0	1	801420			35788	5596	24532	24584	41309	41309					0.10094577919812764
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8316650390625	2	553.832049	1105.64954	-0.80482	-0.00044573	-0.083018	-4.5978E-05	-0.88783	-0.00049171	553.8319719630811	48.371	1.4141	48.273	47.966	49.381	-0.097553					114	37	5	0	0	0	0.14181	4	4823	4778;4788;4823;4837		101.25	34.823	1	20399000			35789	5596	24532	24584	41310;41311;41312;41313	41312					0.10094577919812764
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8311767578125	2	553.832049	1105.64954	-0.97515	-0.00054007	0.031605	1.7504E-05	-0.94354	-0.00052256	553.8320187004048	48.673	1.4707	48.395	48.078	49.549	-0.27785					120	39	5	0	0	0	0.077175	4	4816	4807;4816;4827;4851		118.74	41.969	1	19538000			35790	5596	24532	24584	41314;41315;41316;41317	41315					0.10094577919812764
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8323974609375	2	553.832049	1105.64954	-0.23622	-0.00013083	-0.64428	-0.00035682	-0.8805	-0.00048765	553.8316742934866	48.506	1.4739	48.324	48.02	49.494	-0.18206					120	39	5	0	0	0	0.14024	6	4833	4787;4798;4809;4821;4833;4849		101.6	27.626	1	19163000			35791	5596	24532	24584	41318;41319;41320;41321;41322;41323	41322					0.10094577919812764
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.832049	1105.64954	-0.45785	-0.00025357	-0.14377	-7.9623E-05	-0.60162	-0.00033319	553.8316995724185	47.987	0.36081	47.987	47.779	48.14	0	-0.19139	0.00014423	NaN	118.74	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713330			35792	5596	24532	24584							0.10094577919812764
KTRIIDVVY	9	Unmodified	_KTRIIDVVY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.832049	1105.64954	-0.74375	-0.00041191	-0.43729	-0.00024218	-1.181	-0.0006541	553.8318922260127	47.853	0.32209	47.912	47.677	47.999	0.059097	-0.26621	-0.00018089	NaN	118.74	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465330			35793	5596	24532	24584							0.10094577919812764
KTRIQVRL	8	Unmodified	_KTRIQVRL_					0	0	0		nc|ENSG00000010438|P35030-5|PRSS3;ENSG00000010438|ENST00000379405|PRSS3;nc|ENSG00000010438|P35030-2|PRSS3;nc|ENSG00000010438|P35030-4|PRSS3;nc|ENSG00000010438|P35030|PRSS3	nc|ENSG00000010438|P35030-5|PRSS3	nc|ENSG00000010438|P35030-5|PRSS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8058776855469	2	507.33255	1012.65055	-0.81101	-0.00041145	0.70916	0.00035978	-0.10185	-5.167E-05	507.3328451868882	20.845	0.49594	20.622	20.415	20.911	-0.22344					18	9	3	0	0	0	0.027866	1	553	553		10.866	0	1	55925			35794	877	24533	24585	41324	41324					0.1447283707935867
KTRIWVLLHLR	11	Unmodified	_KTRIWVLLHLR_					0	0	0			REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.9752502441406	3	478.973384	1433.89832	0.36627	0.00017543	2.7216	0.0013036	3.0879	0.001479	478.97455266738433	106.97	0.48298	106.97	106.74	107.23	-0.003479					39	13	4	0	0	0	1.0996	1	13690	13690		11.455	2.2428	1	446520	+		35795	34011	24534	24586	41325	41325					0.19872965947138255
KTRIWVLLHLR	11	Unmodified	_KTRIWVLLHLR_					0	0	0			REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.97467041015625	3	478.973384	1433.89832	0.078473	3.7586E-05	3.011	0.0014422	3.0894	0.0014798	478.9747108849284	107.1	0.21643	107.1	106.92	107.14	0.0018311					17	5	4	0	0	0	1.0978	1	13665	13665		11.932	1.8285	1	446640	+		35796	34011	24534	24586	41326	41326					0.19872965947138255
KTRIWVLLHLR	11	Unmodified	_KTRIWVLLHLR_					0	0	0			REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	478.973384	1433.89832	1.5973	0.00076506	1.5868	0.00076002	3.1841	0.0015251	478.9741157899281	107.12	0.3632	107.12	106.98	107.35	0	0.042047	-0.0012094	NaN	11.932	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177070	+		35797	34011	24534	24586							0.19872965947138255
KTRIWVLLHLR	11	Unmodified	_KTRIWVLLHLR_					0	0	0			REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	478.973384	1433.89832	0.36627	0.00017543	2.7216	0.0013036	3.0879	0.001479	478.97455266738433	106.97	0.48298	106.97	106.74	107.23	-0.003479	-0.10723	0.00042121	NaN	11.932	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446520	+		35798	34011	24534	24586							0.19872965947138255
KTRIWVLLHLR	11	Unmodified	_KTRIWVLLHLR_					0	0	0			REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	478.973384	1433.89832	0.078473	3.7586E-05	3.011	0.0014422	3.0894	0.0014798	478.9747108849284	107.1	0.21643	107.1	106.92	107.14	0.0018311	0.023057	0.00083702	NaN	11.932	17	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446640	+		35799	34011	24534	24586							0.19872965947138255
KTRIWVLLHLR	11	Unmodified	_KTRIWVLLHLR_					0	0	0			REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	REV__ENST00000505485.1_1_6:119177705-119215238:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	478.973384	1433.89832	0.76003	0.00036403	2.1064	0.0010089	2.8664	0.0013729	478.9743453953011	107.28	0.13168	107.12	107.02	107.15	-0.15771	0.042121	-0.00046279	NaN	11.932	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178880	+		35800	34011	24534	24586							0.19872965947138255
KTRKRKVL	8	Unmodified	_KTRKRKVL_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.839111328125	2	514.856193	1027.69783	0.21491	0.00011065	2.3096	0.0011891	2.5245	0.0012998	514.857221001566	57.343	0.14536	57.141	57.064	57.21	-0.20208					5	3	2	0	0	0	0.027866	1	6250	6250		63.306	0	1	69729	+		35801	36787	24535	24587	41327	41327					0.18509116350355725
KTRLEQEIATY	11	Unmodified	_KTRLEQEIATY_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__Q9D312;CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;TPT1-KRT17|1|fusion;CON__Q61782;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9Z2K1;CON__Q3ZAW8	CON__P13646-1;CON__P02533;CON__P19012;CON__Q9QWL7;CON__Q9Z2K1	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.24530029296875	3	451.245386	1350.71433	0.24205	0.00010922	-0.7826	-0.00035315	-0.54056	-0.00024392	451.2450383307364	45.718	0.8969	45.621	45.326	46.223	-0.096649					99	24	5	0	0	0	0.94885	3	4339	4339;4350;4361		48.188	11.87	1	13432000		+	35802	524;573;502;493;556	24536	24588	41328;41329;41330	41328					0.05300107935136111
KTRLEQEIATY	11	Unmodified	_KTRLEQEIATY_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__Q9D312;CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;TPT1-KRT17|1|fusion;CON__Q61782;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9Z2K1;CON__Q3ZAW8	CON__P13646-1;CON__P02533;CON__P19012;CON__Q9QWL7;CON__Q9Z2K1	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2454833984375	3	451.245386	1350.71433	-0.22454	-0.00010132	-0.43523	-0.0001964	-0.65977	-0.00029772	451.24518709553644	46.005	1.0401	45.744	45.383	46.423	-0.26118					97	27	5	0	0	0	0.70094	2	4375	4375;4396		63.694	5.4478	1	11241000		+	35803	524;573;502;493;556	24536	24588	41331;41332	41331					0.05300107935136111
KTRLEQEIATY	11	Unmodified	_KTRLEQEIATY_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__Q9D312;CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;TPT1-KRT17|1|fusion;CON__Q61782;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q9Z2K1;CON__Q3ZAW8	CON__P13646-1;CON__P02533;CON__P19012;CON__Q9QWL7;CON__Q9Z2K1	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.24566650390625	3	451.245386	1350.71433	-0.8301	-0.00037458	0.086045	3.8828E-05	-0.74406	-0.00033575	451.2453946944836	45.914	1.0156	45.712	45.391	46.406	-0.20226					94	27	5	0	0	0	0.86757	1	4383	4383		53.597	2.0691	1	10373000		+	35804	524;573;502;493;556	24536	24588	41333	41333					0.05300107935136111
KTRLKKIL	8	Unmodified	_KTRLKKIL_					0	0	0		ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;nc|ENSG00000103599|Q86VS3-3|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3135070800781	2	500.355494	998.696435	-0.29249	-0.00014635	-1.5503	-0.00077571	-1.8428	-0.00092206	500.35448701745037	76.09	0.31253	76.09	75.956	76.268	0					11	7	2	0	0	0	0.027866	1	9376	9376		17.365	0	1	190270			35805	2519	24537	24589	41334	41334					0.19703482261604677
KTRLKKIL	8	Unmodified	_KTRLKKIL_					0	0	0		ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;nc|ENSG00000103599|Q86VS3-3|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3133544921875	2	500.355494	998.696435	0.35917	0.00017971	-2.1828	-0.0010922	-1.8237	-0.00091249	500.3546402899164	76.333	0.19873	76.345	76.166	76.365	0.011635					7	4	2	0	0	0	0.027866	1	9329	9329		25.45	0	1	68395			35806	2519	24537	24589	41335	41335					0.19703482261604677
KTRMQLQGE	9	Unmodified	_KTRMQLQGE_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8341674804688	2	545.787315	1089.56008	-0.65409	-0.00035699	0.94745	0.00051711	0.29336	0.00016011	545.7875348112728	49.073	0.59447	48.891	48.558	49.153	-0.18206					39	15	3	0	0	0	0.024344	1	4889	4889		45.972	0	1	546770			35807	4104	24538	24590	41336	41336					0.018879999687896998
KTRQRREAR	9	Unmodified	_KTRQRREAR_					0	0	0			REV__ENST00000485006.1_1_3:147657888-147713618:+|nuORF	REV__ENST00000485006.1_1_3:147657888-147713618:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.905921	1199.69593	0.22069	8.8475E-05	2.7361	0.0010969	2.9568	0.0011854	400.9068849343227	21.946	0.61726	21.871	21.56	22.177	-0.075296					23	12	3	0	0	0	0.024359	1	739	739		56.434	6.4003	1	76622	+		35808	33550	24539	24591	41337	41337					0.104074555944635
KTRRKGPE	8	Unmodified	_KTRRKGPE_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7648620605469	2	486.290882	970.567212	0.50177	0.00024401	-0.59978	-0.00029167	-0.098008	-4.766E-05	486.2904950952558	19.535	0.66789	19.535	19.021	19.689	0					22	13	2	0	0	0	0.027866	1	438	438		38.806	5.9937	1	63815	+		35809	22910	24540	24592	41338	41338					0.08075100631515397
KTRSDPLEA	9	Unmodified	_KTRSDPLEA_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.77337646484375	2	508.772188	1015.52982	-0.54006	-0.00027477	2.0837	0.0010601	1.5436	0.00078533	508.77200365050044	33.945	1.2	33.945	33.626	34.826	0					58	30	3	0	0	0	0.15366	1	2468	2468		98.629	2.8142	1	5734900	+		35810	21154	24541	24593	41339	41339					0.02267964575219139
KTRSILLAL	9	Unmodified	_KTRSILLAL_					0	0	0			REV__ENST00000296873.11_1_5:132093085-132093202:-|nuORF	REV__ENST00000296873.11_1_5:132093085-132093202:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3021545410156	2	507.837134	1013.65972	0.62068	0.0003152	-0.88379	-0.00044882	-0.26311	-0.00013362	507.8367306173825	55.531	0.43195	55.531	55.319	55.75	0					20	11	2	0	0	0	0.021513	1	6160	6160		93.195	21.9	1	242500	+		35811	30005	24542	24594	41340	41340					0.153431856450311
KTRSLKMK	8	Oxidation (M)	_KTRSLKM(Oxidation (M))K_		KTRSLKM(1)K		KTRSLKM(60)K	0	0	1		ENST00000357749.6_1_X:85218995-85233876:-|nuORF	ENST00000357749.6_1_X:85218995-85233876:-|nuORF	ENST00000357749.6_1_X:85218995-85233876:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.3039245605469	2	504.305144	1006.59573	-0.38533	-0.00019433	-2.485	-0.0012532	-2.8704	-0.0014475	504.30375170564406	23.516	0.89315	23.336	22.975	23.868	-0.17989					58	20	4	0	0	0	0.78825	1	923	923		60.118	6.7668	1	2025300			35812	12704	24543	24595	41341	41341		476			0.09270082216437459
KTRTIVGELT	10	Unmodified	_KTRTIVGELT_					0	0	0			REV__RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	REV__RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2698364257812	2	559.332413	1116.65027	-0.079201	-4.43E-05	3.3548	0.0018764	3.2756	0.0018321	559.3340173940281	70.574	0.38917	70.586	70.424	70.813	0.012421					16	8	2	0	0	0	0.03519	1	8445	8445		23.523	0	1	358770	+		35813	22070	24544	24596	41342	41342					0.09661372568848492
KTRTNVPTF	9	Unmodified	_KTRTNVPTF_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2977905273438	2	532.298373	1062.58219	-0.20605	-0.00010968	-0.16745	-8.9131E-05	-0.37349	-0.00019881	532.2980854716619	34.583	0.86486	34.359	33.96	34.825	-0.22412					49	21	3	0	0	0	0.2508	1	2570	2570		82.241	18.934	1	1341200			35814	3550	24545	24597	41343	41343					0.053405477088290354
KTRTNVPTF	9	Unmodified	_KTRTNVPTF_					0	0	0		nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF;ENSG00000116497|ENST00000373475|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.298583984375	2	532.298373	1062.58219	-0.81804	-0.00043544	0.36656	0.00019512	-0.45148	-0.00024032	532.298352175036	34.53	0.94993	34.354	33.934	34.884	-0.17557					52	23	3	0	0	0	0.37611	1	2532	2532		67.494	14.142	1	1506900			35815	3550	24545	24597	41344	41344					0.053405477088290354
KTRTRNAK	8	Unmodified	_KTRTRNAK_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.27008056640625	2	487.796332	973.578111	1.6346	0.00079737	0.35692	0.00017411	1.9916	0.00097148	487.79632691644315	23.111	0.36602	22.919	22.758	23.124	-0.19117					13	7	2	0	0	0	0.027866	1	846	846		44.117	0	1	72735	+		35816	22656	24546	24598	41345	41345					0.0902650300578216
KTRTSTLLP	9	Unmodified	_KTRTSTLLP_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7686767578125	2	508.808574	1015.60259	-0.28303	-0.00014401	0.1203	6.1212E-05	-0.16273	-8.2796E-05	508.80853432041175	42.212	0.56271	42.079	41.789	42.352	-0.13219					40	16	3	0	0	0	0.024209	1	3849	3849		47.657	5.2612	1	1353000			35817	3665	24547	24599	41346	41346					0.09541718368666352
KTRVAYVI	8	Unmodified	_KTRVAYVI_					0	0	0			REV__ENSG00000197790|ENST00000360213|OR52M1	REV__ENSG00000197790|ENST00000360213|OR52M1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.20123291015625	2	475.295102	948.575651	-0.20597	-9.7899E-05	-0.34296	-0.00016301	-0.54893	-0.00026091	475.29472110481834	40.171	0.44361	40.022	39.746	40.189	-0.1497					17	11	2	0	0	0	0.027866	1	3470	3470		16.473	4.2663	1	223130	+		35818	28349	24548	24600	41347	41347					0.09930654548122675
KTRVFAVVI	9	Unmodified	_KTRVFAVVI_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.8320922851562	2	516.831852	1031.64915	-0.93744	-0.0004845	0.53957	0.00027887	-0.39788	-0.00020563	516.8320295553544	53.582	1.1905	53.446	53.208	54.399	-0.13617					94	35	5	0	0	0	0.30449	3	5623	5623;5632;5645		75.043	10.689	1	10709000			35819	5540	24549	24601	41348;41349;41350	41348					0.1345920299061163
KTRVFAVVI	9	Unmodified	_KTRVFAVVI_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.8311767578125	2	516.831852	1031.64915	-0.054355	-2.8092E-05	-0.40899	-0.00021138	-0.46335	-0.00023947	516.8315335799879	53.822	1.2399	53.576	53.275	54.515	-0.2453					89	37	5	0	0	0	0.40693	1	5656	5656		65.465	1.2581	1	13185000			35820	5540	24549	24601	41351	41351					0.1345920299061163
KTRVFAVVI	9	Unmodified	_KTRVFAVVI_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.8309936523438	2	516.831852	1031.64915	-0.23807	-0.00012304	-0.28439	-0.00014698	-0.52246	-0.00027003	516.8316092983823	53.738	1.0865	53.54	53.201	54.287	-0.19739					84	31	4	0	0	0	0.30449	1	5623	5623		75.043	6.2565	1	10566000			35821	5540	24549	24601	41352	41352					0.1345920299061163
KTRVGVVQY	9	Unmodified	_KTRVGVVQY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3090209960938	2	525.308741	1048.60293	-0.55714	-0.00029267	-0.053261	-2.7978E-05	-0.6104	-0.00032065	525.3086510728914	34.48	0.48175	34.305	34.089	34.571	-0.17557					31	11	4	0	0	0	0.10174	1	2533	2533		110.12	3.7047	1	1247300			35822	3147	24550	24602	41353	41353					0.08057138088520333
KTRWLNTP	8	Unmodified	_KTRWLNTP_					0	0	0		ENSG00000075340|ENST00000264436|ADD2;nc|ENSG00000075340|P35612-2|ADD2;nc|ENSG00000075340|P35612-8|ADD2;nc|ENSG00000075340|P35612-9|ADD2;nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-3|ADD2	ENSG00000075340|ENST00000264436|ADD2	ENSG00000075340|ENST00000264436|ADD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7724609375	2	508.287808	1014.56106	0.08329	4.2335E-05	-1.9318	-0.00098189	-1.8485	-0.00093955	508.28839084034513	33.54	0.19336	33.596	33.5	33.693	0.056572					5	4	2	0	0	0	0.027866	1	2383	2383		53.351	0	1	29986			35823	1554	24551	24603	41354	41354					0.054365823999773966
KTRYIFDLF	9	Unmodified	_KTRYIFDLF_					0	0	0		ENSG00000106245|ENST00000222969|BUD31;ENST00000471813.1_1_7:99008715-99013888:+|nuORF;nc|ENSG00000106245|P41223-2|BUD31;ENST00000466798.1_1_7:99013792-99015269:+|nuORF	ENSG00000106245|ENST00000222969|BUD31	ENSG00000106245|ENST00000222969|BUD31	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.8323364257812	2	601.832049	1201.64954	-0.29189	-0.00017567	0.25546	0.00015374	-0.036438	-2.193E-05	601.8320925596622	72.607	0.68297	72.343	72.084	72.767	-0.26479					35	15	3	0	0	0	0.41161	1	8529	8529		49.536	6.6718	1	664990			35824	2769	24552	24604	41355	41355					0.05678577919775307
KTRYIFDLF	9	Unmodified	_KTRYIFDLF_					0	0	0		ENSG00000106245|ENST00000222969|BUD31;ENST00000471813.1_1_7:99008715-99013888:+|nuORF;nc|ENSG00000106245|P41223-2|BUD31;ENST00000466798.1_1_7:99013792-99015269:+|nuORF	ENSG00000106245|ENST00000222969|BUD31	ENSG00000106245|ENST00000222969|BUD31	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	601.832049	1201.64954	-0.38368	-0.00023091	0.34099	0.00020522	-0.042692	-2.5693E-05	601.8321899664736	72.568	0.68478	72.291	72.028	72.713	-0.2769	0.020951	8.7859E-05	NaN	49.536	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641700			35825	2769	24552	24604							0.05678577919775307
KTRYIFDLF	9	Unmodified	_KTRYIFDLF_					0	0	0		ENSG00000106245|ENST00000222969|BUD31;ENST00000471813.1_1_7:99008715-99013888:+|nuORF;nc|ENSG00000106245|P41223-2|BUD31;ENST00000466798.1_1_7:99013792-99015269:+|nuORF	ENSG00000106245|ENST00000222969|BUD31	ENSG00000106245|ENST00000222969|BUD31	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	601.832049	1201.64954	-0.61849	-0.00037223	0.19093	0.00011491	-0.42756	-0.00025732	601.8320849744425	72.374	0.67322	72.176	71.909	72.582	-0.1981	-0.093834	-9.2771E-05	NaN	49.536	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731550			35826	2769	24552	24604							0.05678577919775307
KTRYLEKL	8	Unmodified	_KTRYLEKL_					0	0	0			REV__EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	REV__EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.3023681640625	2	525.818941	1049.62333	-0.29443	-0.00015481	-1.1294	-0.00059388	-1.4239	-0.0007487	525.8181697207281	72.037	0.27085	72.037	71.94	72.211	0					9	6	2	0	0	0	0.027866	1	8778	8778		10.866	0	1	202580	+		35827	19735	24553	24605	41356	41356					0.10050308748327552
KTSAFGIF	8	Unmodified	_KTSAFGIF_					0	0	0		ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.2484436035156	2	435.739628	869.464704	-0.31627	-0.00013781	-4.0274	-0.0017549	-4.3437	-0.0018927	435.73775451989934	33.659	0.69859	33.459	33.133	33.831	-0.20019					47	17	5	0	0	0	0.027866	1	2465	2465		18.324	4.5491	1	785780			35828	10437	24554	24606	41357	41357					0.02475014840035783
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7591552734375	2	525.813325	1049.6121	-0.3136	-0.00016489	-0.19849	-0.00010437	-0.51209	-0.00026926	525.8129749266667	57.401	0.54833	57.168	56.914	57.463	-0.23363					37	14	3	0	0	0	0.024319	1	6237	6237		39.253	5.0803	1	1093100			35829	7081	24555	24607	41358	41358					0.08927486654192762
KTSDKKGR	8	Unmodified	_KTSDKKGR_					0	0	0		ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	ENSG00000134897|ENST00000257336|BIVM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.22247314453125	2	460.269616	918.524678	0.7701	0.00035445	4.3642	0.0020087	5.1342	0.0023631	460.2716643595638	42.951	1.2993	42.981	42.294	43.593	0.030827					69	35	2	0	0	0	0.027866	1	3850	3850		7.1934	0	1	3599100			35830	4840	24556	24608	41359	41359					0.06215705503279878
KTSDPGRSW	9	Unmodified	_KTSDPGRSW_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2568359375	2	517.256705	1032.49886	-0.064986	-3.3614E-05	0.11623	6.0123E-05	0.051249	2.6509E-05	517.2567392598296	25.188	0.97452	25.017	24.647	25.621	-0.17078					54	22	4	0	0	0	0.043667	2	1162	1162;1187		131.03	22.944	1	2278200			35831	2546	24557	24609	41360;41361	41360					-0.0160918873900755
KTSDPGRSW	9	Unmodified	_KTSDPGRSW_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.257080078125	2	517.256705	1032.49886	0.86867	0.00044933	-0.92271	-0.00047728	-0.054034	-2.795E-05	517.2563160611948	25.164	0.84724	24.993	24.732	25.579	-0.17151					46	19	4	0	0	0	0.1158	2	1145	1145;1158		107.01	21.847	1	2679900			35832	2546	24557	24609	41362;41363	41362					-0.0160918873900755
KTSFKFKN	8	Unmodified	_KTSFKFKN_					0	0	0		ENST00000558616.1_1_15:40062782-40093530:-|nuORF	ENST00000558616.1_1_15:40062782-40093530:-|nuORF	ENST00000558616.1_1_15:40062782-40093530:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2825622558594	2	500.284734	998.554916	0.38192	0.00019107	-3.5871	-0.0017946	-3.2052	-0.0016035	500.283099602802	102.6	1.571	102.47	101.18	102.75	-0.12931					58	36	4	0	0	0	1.0338	1	12748	12748		31.955	1.4512	1	697070			35833	16757	24558	24610	41364	41364					0.05558064168474175
KTSFLHLL	8	Unmodified	_KTSFLHLL_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.77142333984375	2	479.789653	957.564752	0.30108	0.00014446	-0.50768	-0.00024358	-0.2066	-9.9124E-05	479.7896553979161	75.023	0.24535	74.764	74.619	74.864	-0.25887					7	5	2	0	0	0	0.027866	1	9172	9172		45.952	3.5558	1	80775			35834	10895	24559	24611	41365	41365					0.0842725217385123
KTSGIINKF	9	Unmodified	_KTSGIINKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.29791259765625	2	504.297842	1006.58113	0.16205	8.172E-05	-0.67974	-0.00034279	-0.5177	-0.00026107	504.2974691348214	36.792	1.0141	36.599	36.176	37.19	-0.193					77	25	5	0	0	0	0.014918	6	2920	2887;2896;2908;2920;2935;2948		205.58	97.495	1	8735300			35835	4329	24560	24612	41366;41367;41368;41369;41370;41371	41369					0.07810333339944009
KTSGIINKF	9	Unmodified	_KTSGIINKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.29779052734375	2	504.297842	1006.58113	-0.39034	-0.00019685	-0.17706	-8.929E-05	-0.56739	-0.00028613	504.29773307850667	36.794	1.1477	36.578	36.126	37.274	-0.21661					83	28	4	0	0	0	0.014034	5	2920	2883;2896;2908;2920;2934		166.68	70.731	1	8063600			35836	4329	24560	24612	41372;41373;41374;41375;41376	41375					0.07810333339944009
KTSGIINKF	9	Unmodified	_KTSGIINKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2981262207031	2	504.297842	1006.58113	1.114	0.00056179	-1.7818	-0.00089854	-0.66777	-0.00033675	504.29692813778286	36.74	1.1506	36.531	36.082	37.232	-0.2092					91	28	5	0	0	0	0.013887	5	2868	2868;2877;2889;2902;2916		180.93	72.838	1	7621200			35837	4329	24560	24612	41377;41378;41379;41380;41381	41377					0.07810333339944009
KTSGVEKV	8	Unmodified	_KTSGVEKV_					0	0	0			REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF	REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2585754394531	2	424.247818	846.481082	-0.78008	-0.00033095	-1.8911	-0.00080229	-2.6712	-0.0011332	424.24716065263823	27.091	0.21844	27.173	27.064	27.282	0.081293					6	5	2	0	0	0	0.027866	1	1393	1393		35.618	14.671	1	24502	+		35838	32419	24561	24613	41382	41382					0.051700960061339174
KTSIFASQLL	10	Unmodified	_KTSIFASQLL_					0	0	0			REV__ENST00000372718.7_1_1:40888372-40888486:+|nuORF	REV__ENST00000372718.7_1_1:40888372-40888486:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.78271484375	2	554.324057	1106.63356	0.19953	0.0001106	-3.845	-0.0021314	-3.6454	-0.0020207	554.3218664197434	81.329	2.313	81.135	80.439	82.752	-0.19334					114	54	3	0	0	0	0.03519	1	9970	9970		49.536	0	1	233880	+		35839	31212	24562	24614	41383	41383					0.08450871682885008
KTSIFINLS	9	Unmodified	_KTSIFINLS_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.80780029296875	2	511.797675	1021.5808	-0.30073	-0.00015391	-0.49889	-0.00025533	-0.79962	-0.00040924	511.79728771827854	68.528	0.4854	68.266	67.98	68.466	-0.26166					25	11	3	0	0	0	0.024511	1	7944	7944		19.104	0	1	409630			35840	10583	24563	24615	41384	41384					0.07086913620082669
KTSIFINLS	9	Unmodified	_KTSIFINLS_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.797675	1021.5808	0.27538	0.00014094	-0.68374	-0.00034994	-0.40836	-0.000209	511.7972052374686	68.461	0.55768	68.218	67.951	68.509	-0.24278	-0.013278	-2.1952E-05	NaN	35.152	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486190			35841	10583	24563	24615							0.07086913620082669
KTSIFINLS	9	Unmodified	_KTSIFINLS_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.797675	1021.5808	0.4188	0.00021434	-0.84895	-0.00043449	-0.43015	-0.00022015	511.7969846212077	68.441	0.56293	68.21	67.917	68.48	-0.23048	-0.021239	-0.00019106	NaN	35.152	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417600			35842	10583	24563	24615							0.07086913620082669
KTSKEPFY	8	Unmodified	_KTSKEPFY_					0	0	0			REV__ENSG00000177947|ENST00000325113|ODF3	REV__ENSG00000177947|ENST00000325113|ODF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.20782470703125	2	500.260925	998.507297	-0.49981	-0.00025004	0.86337	0.00043191	0.36356	0.00018187	500.26093367891275	42.13	0.38634	41.899	41.769	42.155	-0.23186					15	10	2	0	0	0	0.027866	1	3759	3759		40.573	8.6178	1	116670	+		35843	27153	24564	24616	41385	41385					0.007983651776157785
KTSLAPIIVY	10	Unmodified	_KTSLAPIIVY_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2;nc|ENSG00000067191|Q02641-3|CACNB1;nc|ENSG00000067191|Q02641-2|CACNB1;ENSG00000067191|ENST00000394303|CACNB1	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7828979492188	2	552.8368	1103.65905	0.56337	0.00031145	-1.5881	-0.00087796	-1.0247	-0.00056651	552.8363152839931	83.537	0.72942	83.325	82.747	83.476	-0.21159					22	16	2	0	0	0	0.03519	1	10024	10024		32.812	0	1	119410			35844	18471	24565	24617	41386	41386					0.11136346205330483
KTSLDEALQW	10	Unmodified	_KTSLDEALQW_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.8060302734375	2	595.806228	1189.5979	-0.64616	-0.00038498	0.32979	0.00019649	-0.31637	-0.00018849	595.8063933807374	65.875	0.65775	65.634	65.33	65.988	-0.24145					47	15	4	0	0	0	0.75813	1	7547	7547		63.426	3.4957	1	1203000			35845	5624	24566	24618	41387	41387					0.010687894352258809
KTSLITRF	8	Unmodified	_KTSLITRF_					0	0	0		ENST00000541795.1_1_11:73441692-73471680:-|nuORF;nc|ENSG00000175582|P20340-3|RAB6A;nc|ENSG00000154917|Q9NRW1-2|RAB6B;nc|ENSG00000175582|P20340-2|RAB6A;ENSG00000175582|ENST00000336083|RAB6A;ENSG00000154917|ENST00000285208|RAB6B;ENSG00000233087|ENST00000623617|RAB6D;ENSG00000222014|ENST00000410061|RAB6C	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.25335693359375	2	483.292559	964.570566	-0.083703	-4.0453E-05	-0.57213	-0.00027651	-0.65583	-0.00031696	483.292493358189	52.199	0.94412	52.051	51.544	52.488	-0.14735					49	25	3	0	0	0	0.027866	1	5599	5599		31.955	3.8734	1	934270			35846	16444	24567	24619	41388	41388					0.08686350685513844
KTSNIRANF	9	Unmodified	_KTSNIRANF_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7880859375	2	525.788173	1049.56179	-0.92423	-0.00048595	0.46343	0.00024367	-0.4608	-0.00024228	525.7883314016548	29.626	1.0228	29.38	29.011	30.034	-0.24524					55	23	3	0	0	0	0.11092	3	1829	1818;1829;1840		108.09	16.478	1	2894600			35847	18102	24568	24620	41389;41390;41391	41390					0.038993770490378665
KTSNIRANF	9	Unmodified	_KTSNIRANF_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7877807617188	2	525.788173	1049.56179	-0.71294	-0.00037486	0.56238	0.0002957	-0.15056	-7.9161E-05	525.7881782354665	29.487	1.1088	29.315	28.893	30.002	-0.17258					63	25	4	0	0	0	0.20967	1	1813	1813		87.754	2.8388	1	2740200			35848	18102	24568	24620	41392	41392					0.038993770490378665
KTSNIRANF	9	Unmodified	_KTSNIRANF_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7879028320312	2	525.788173	1049.56179	-0.12564	-6.606E-05	-0.43013	-0.00022616	-0.55577	-0.00029222	525.7878945665924	29.481	1.2194	29.332	29	30.219	-0.14952					55	28	3	0	0	0	0.072054	2	1787	1787;1800		120.62	35.705	1	2804800			35849	18102	24568	24620	41393;41394	41393					0.038993770490378665
KTSNPEVL	8	Unmodified	_KTSNPEVL_					0	0	0		nc|ENSG00000148541|Q8NE31-5|FAM13C;nc|ENSG00000148541|Q8NE31-4|FAM13C;ENSG00000148541|ENST00000618804|FAM13C;nc|ENSG00000148541|Q8NE31-2|FAM13C	nc|ENSG00000148541|Q8NE31-5|FAM13C	nc|ENSG00000148541|Q8NE31-5|FAM13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7714538574219	2	444.245275	886.475997	0.19474	8.6512E-05	-0.017846	-7.928E-06	0.17689	7.8584E-05	444.2451300312821	32.792	0.6953	32.6	32.249	32.944	-0.19261					24	16	2	0	0	0	0.027866	1	2237	2237		37.159	0	1	102330			35850	6039	24569	24621	41395	41395					0.028217921435157223
KTSPLTKIT	9	Unmodified	_KTSPLTKIT_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2602844238281	2	494.8055	987.596446	1.1362	0.00056219	-1.8888	-0.00093458	-0.7526	-0.00037239	494.80430819154054	83.113	0.51321	83.022	82.744	83.257	-0.090454					13	11	2	0	0	0	0.024488	1	10368	10368		40.058	24.416	1	38367			35851	7776	24570	24622	41396	41396					0.10215200137122338
KTSPSSVLL	9	Unmodified	_KTSPSSVLL_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7685546875	2	466.276575	930.538597	0.55959	0.00026093	-0.61293	-0.00028579	-0.053335	-2.4869E-05	466.2758995127801	74.612	0.41924	74.353	74.158	74.577	-0.25887					13	9	2	0	0	0	0.024466	1	9079	9079		39.253	7.723	1	104230	+		35852	19162	24571	24623	41397	41397					0.07054938211717854
KTSRNTKVL	9	Unmodified	_KTSRNTKVL_					0	0	0			REV__ENST00000415772.5_1_7:72302228-72304559:+|nuORF	REV__ENST00000415772.5_1_7:72302228-72304559:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2999877929688	2	523.819473	1045.62439	0.66392	0.00034777	-4.1418	-0.0021695	-3.4779	-0.0018218	524.3184698108374	18.265	0.44219	18.109	17.904	18.346	-0.15637					26	8	5	0	0	0	0.024025	1	292	292		62.107	1.9892	1	173490	+		35853	32061	24572	24624	41398	41398					0.1034052311722462
KTSVEEVSADV	11	Unmodified	_KTSVEEVSADV_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.833251953125	2	582.29315	1162.57175	-0.026333	-1.5333E-05	0.35546	0.00020698	0.32913	0.00019165	582.2932285138404	75.128	1.1001	74.853	74.519	75.619	-0.27573					47	26	2	0	0	0	0.024765	1	8866	8866		49.536	3.0793	1	910300			35854	10624	24573	24625	41399	41399					-0.0030352452690749487
KTSVTLSLV	9	Unmodified	_KTSVTLSLV_					0	0	0		nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.75799560546875	2	474.292225	946.569897	-0.8174	-0.00038769	-3.4862	-0.0016535	-4.3036	-0.0020412	474.2910202605726	82.11	1.2447	81.97	81.277	82.522	-0.14014					51	28	3	0	0	0	0.024288	1	9949	9949		62.107	17.991	1	100240			35855	2180	24574	24626	41400	41400					0.0944751124582126
KTSVTLSLV	9	Unmodified	_KTSVTLSLV_					0	0	0		nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	474.292225	946.569897	1.022	0.00048473	-5.1682	-0.0024513	-4.1462	-0.0019665	474.29040551993234	82.093	0.81535	81.983	81.564	82.379	-0.11006	0.023563	-0.00171	NaN	62.107	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126530			35856	2180	24574	24626							0.0944751124582126
KTSVVVGTW	9	Unmodified	_KTSVVVGTW_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7771911621094	2	488.776742	975.538931	0.63776	0.00031172	0.45503	0.00022241	1.0928	0.00053413	488.77597671055554	51.252	0.758	51.14	50.859	51.617	-0.11163					47	19	4	0	0	0	0.086035	2	5260	5250;5260		115.49	35.781	1	2027400			35857	1393	24575	24627	41401;41402	41402					0.05018357931567152
KTSVVVGTW	9	Unmodified	_KTSVVVGTW_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.7774963378906	2	488.776742	975.538931	-0.61212	-0.00029919	1.0693	0.00052267	0.45721	0.00022347	488.7766174748419	51.503	0.80172	51.227	50.702	51.504	-0.27643					40	20	4	0	0	0	0.086035	2	5290	5280;5290		115.49	45.866	1	2085000			35858	1393	24575	24627	41403;41404	41404					0.05018357931567152
KTSVVVGTW	9	Unmodified	_KTSVVVGTW_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7776184082031	2	488.776742	975.538931	1.3285	0.00064936	-0.83714	-0.00040917	0.4914	0.00024019	488.77597522097994	51.345	0.95516	51.164	50.572	51.527	-0.18071					48	24	4	0	0	0	0.03666	3	5266	5257;5266;5281		136.27	48.572	1	1789400			35859	1393	24575	24627	41405;41406;41407	41406					0.05018357931567152
KTTAAHSL	8	Unmodified	_KTTAAHSL_					0	0	0		ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2121887207031	2	414.732335	827.450116	-0.10238	-4.2458E-05	2.718	0.0011272	2.6156	0.0010848	414.73302602153404	28.993	0.58746	29.074	28.742	29.329	0.080811					33	14	4	0	0	0	0.027866	1	1709	1709		31.955	0	1	281610			35860	6199	24576	24628	41408	41408					0.029489426918871686
KTTALKQL	8	Unmodified	_KTTALKQL_					0	0	0		ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.8030090332031	2	451.78711	901.559667	0.43327	0.00019575	-0.78072	-0.00035272	-0.34745	-0.00015697	451.7866082374952	19.665	0.59034	19.504	19.233	19.823	-0.16079					31	11	4	0	0	0	0.027866	1	433	433		37.159	0	1	703110			35861	5803	24577	24629	41409	41409					0.10494948311225016
KTTAQVKP	8	Unmodified	_KTTAQVKP_					0	0	0			REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2553405761719	2	436.763635	871.512717	0.16469	7.1932E-05	-0.065158	-2.8459E-05	0.099536	4.3474E-05	436.763451627081	61.037	0.68453	61.037	60.73	61.414	0					35	17	3	0	0	0	0.027866	1	7097	7097		54.776	8.8244	1	740840	+		35862	33296	24578	24630	41410	41410					0.071820887600893
KTTAQVKP	8	Unmodified	_KTTAQVKP_					0	0	0			REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.763635	871.512717	0.082833	3.6179E-05	0.10747	4.6939E-05	0.1903	8.3118E-05	436.76354048315176	61.294	0.59534	61.067	60.86	61.455	-0.22663	0.0077022	6.7128E-05	NaN	54.776	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735920	+		35863	33296	24578	24630							0.071820887600893
KTTAQVKP	8	Unmodified	_KTTAQVKP_					0	0	0			REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	436.763635	871.512717	0.049232	2.1503E-05	0.048021	2.0974E-05	0.097253	4.2476E-05	436.7635197586805	61.007	0.60474	61.078	60.79	61.394	0.071125	0.018099	1.5197E-05	NaN	54.776	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	714700	+		35864	33296	24578	24630							0.071820887600893
KTTAQVKP	8	Unmodified	_KTTAQVKP_					0	0	0			REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	436.763635	871.512717	-0.17621	-7.6961E-05	-0.19169	-8.3722E-05	-0.36789	-0.00016068	436.7634743766139	61.262	0.37235	61.056	60.928	61.301	-0.20599	-0.003365	-0.00019419	NaN	54.776	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112570	+		35865	33296	24578	24630							0.071820887600893
KTTAQYVMEQT	11	Unmodified	_KTTAQYVMEQT_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.780029296875	3	433.879827	1298.61765	0.29623	0.00012853	-2.9396	-0.0012754	-2.6434	-0.0011469	433.8791624094209	38.744	0.19801	38.518	38.402	38.6	-0.2257					6	4	2	0	0	0	0.024779	1	3211	3211		11.932	5.6115	1	22089	+		35866	28137	24579	24631	41411	41411					-0.01971202616323353
KTTDISIEP	9	Unmodified	_KTTDISIEP_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7383728027344	2	502.268947	1002.52334	1.0896	0.00054727	-0.52712	-0.00026475	0.56248	0.00028251	502.2688633140541	36.325	0.96702	36.127	35.809	36.776	-0.19829					60	24	3	0	0	0	0.024418	1	2837	2837		37.812	3.639	1	2623100			35867	9453	24580	24632	41412	41412					0.022180266238592594
KTTFPVQAVKF	11	Unmodified	_KTTFPVQAVKF_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3685302734375	2	633.366256	1264.71796	0.82489	0.00052246	4.0481	0.0025639	4.873	0.0030864	633.3688101200457	105.76	0.48268	105.76	105.45	105.93	0					31	14	4	0	0	0	1.0344	1	13580	13580		29.17	0	1	169070	+		35868	27815	24581	24633	41413	41413					0.0961882249964674
KTTFPVQAVKF	11	Unmodified	_KTTFPVQAVKF_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	633.366256	1264.71796	0.82489	0.00052246	4.0481	0.0025639	4.873	0.0030864	633.3688101200457	105.76	0.48268	105.76	105.45	105.93	0	-0.02059	-0.00086315	NaN	29.17	31	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169070	+		35869	27815	24581	24633							0.0961882249964674
KTTFPVQAVKF	11	Unmodified	_KTTFPVQAVKF_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	633.366256	1264.71796	-0.078831	-4.9929E-05	4.8213	0.0030536	4.7424	0.0030037	633.3690640493884	105.85	0.51826	105.85	105.58	106.1	0.00014496	0.067381	0.00011623	NaN	29.17	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151700	+		35870	27815	24581	24633							0.0961882249964674
KTTFPVQAVKF	11	Unmodified	_KTTFPVQAVKF_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	633.366256	1264.71796	-1.3831	-0.00087599	6.7414	0.0042698	5.3583	0.0033938	633.3706339890545	105.92	0.36542	105.78	105.56	105.92	-0.1328	0.0055899	0.0025486	NaN	29.17	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134820	+		35871	27815	24581	24633							0.0961882249964674
KTTFPVQAVKF	11	Unmodified	_KTTFPVQAVKF_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	633.366256	1264.71796	0.27174	0.00017211	4.6983	0.0029757	4.97	0.0031478	633.36945494313	106.01	0.47369	105.85	105.49	105.96	-0.16132	0.067906	-3.9533E-05	NaN	29.17	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116800	+		35872	27815	24581	24633							0.0961882249964674
KTTIKEVN	8	Unmodified	_KTTIKEVN_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2637939453125	2	466.7742	931.533846	-0.29796	-0.00013908	0.080467	3.756E-05	-0.2175	-0.00010152	466.7740341861072	30.509	0.96994	30.359	29.879	30.849	-0.14952					41	22	3	0	0	0	0.027866	1	1944	1944		39.253	7.723	1	679970	+		35873	19792	24582	24634	41414	41414					0.06534054068947626
KTTKYDLF	8	Unmodified	_KTTKYDLF_					0	0	0			REV__ENSG00000149328|ENST00000535456|GLB1L2	REV__ENSG00000149328|ENST00000535456|GLB1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.77337646484375	2	508.276575	1014.5386	-0.69046	-0.00035094	-1.6836	-0.00085574	-2.3741	-0.0012067	508.27442508249436	33.601	0.60648	33.601	33.287	33.894	0					27	16	3	0	0	0	0.027866	1	2468	2468		71.296	3.802	1	187240	+		35874	24672	24583	24635	41415	41415					0.03190938211696448
KTTLDRSLN	9	Unmodified	_KTTLDRSLN_					0	0	0			REV__nc|ENSG00000130021|Q08623-2|PUDP	REV__nc|ENSG00000130021|Q08623-2|PUDP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2719116210938	2	524.293288	1046.57202	-0.83155	-0.00043598	0.325	0.00017039	-0.50656	-0.00026558	524.2933501093119	39.28	0.53337	39.304	39.028	39.562	0.023727					28	14	3	0	0	0	0.024292	1	3325	3325		58.782	11.125	1	473060	+		35875	23071	24584	24636	41416	41416					0.05059939983630102
KTTLKEEV	8	Unmodified	_KTTLKEEV_					0	0	0		ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1;ENST00000510751.5_1_5:169015420-169022772:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7628173828125	2	474.274032	946.533512	-0.49042	-0.00023259	2.4695	0.0011712	1.9791	0.00093863	474.2752477586059	47.298	0.41049	47.357	47.144	47.554	0.059097					19	11	2	0	0	0	0.027866	1	4675	4675		20.947	0	1	320810			35876	15756	24585	24637	41417	41417					0.058106343490862855
KTTLVLPYI	9	Unmodified	_KTTLVLPYI_					0	0	0			REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8241577148438	2	524.326068	1046.63758	-0.043707	-2.2917E-05	3.5656	0.0018696	3.5219	0.0018466	524.3280152805203	50.019	0.34302	49.914	49.745	50.088	-0.10558					15	8	2	0	0	0	0.024477	1	5053	5053		35.618	20.954	1	427960	+		35877	25469	24586	24638	41418	41418					0.11612961176592762
KTTLVLPYI	9	Unmodified	_KTTLVLPYI_					0	0	0			REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.326068	1046.63758	0.081462	4.2712E-05	3.797	0.0019908	3.8784	0.0020336	524.328375262757	50.33	0.34441	50.051	49.839	50.183	-0.27977	0.068424	0.00014529	NaN	27.882	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323880	+		35878	25469	24586	24638							0.11612961176592762
KTTMKSSVQ	9	Unmodified	_KTTMKSSVQ_					0	0	0		ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2455139160156	2	505.270967	1008.52738	-0.18398	-9.2959E-05	2.6	0.0013137	2.416	0.0012207	505.27334577507753	33.196	0.32287	32.996	32.771	33.094	-0.20019					11	7	2	0	0	0	0.024495	1	2322	2322		26.693	4.733	1	72926			35879	8447	24587	24639	41419	41419					0.023457928459379218
KTTNVNKQL	9	Unmodified	_KTTNVNKQL_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3041381835938	2	523.303655	1044.59276	0.017826	9.3282E-06	-0.38396	-0.00020093	-0.36613	-0.0001916	523.3034574962472	21.168	0.8161	20.99	20.726	21.543	-0.17721					42	16	4	0	0	0	0.03849	2	640	629;640		134.81	17.142	1	1421900			35880	6599	24588	24640	41420;41421	41421					0.07224530363282611
KTTNVNKQL	9	Unmodified	_KTTNVNKQL_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.30419921875	2	523.303655	1044.59276	0.31586	0.00016529	-0.64639	-0.00033826	-0.33052	-0.00017296	523.3032602236889	21.294	0.68341	21.103	20.784	21.468	-0.19072					38	13	4	0	0	0	0.077175	1	645	645		118.74	22.928	1	1114100			35881	6599	24588	24640	41422	41422					0.07224530363282611
KTTNVNKQL	9	Unmodified	_KTTNVNKQL_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3023681640625	2	523.303655	1044.59276	-1.2531	-0.00065576	1.0976	0.00057438	-0.1555	-8.1375E-05	523.3041390138727	21.306	0.44276	21.094	20.872	21.315	-0.2128					27	8	4	0	0	0	0.2101	1	619	619		87.696	15.819	1	548650			35882	6599	24588	24640	41423	41423					0.07224530363282611
KTTNVRQTY	9	Unmodified	_KTTNVRQTY_					0	0	0		nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.79833984375	2	555.798737	1109.58292	0.24998	0.00013894	-0.77719	-0.00043196	-0.52721	-0.00029302	555.798270083675	21.49	0.71918	21.312	21.016	21.735	-0.17721					30	14	3	0	0	0	0.26413	2	680	680;690		80.455	29.262	1	668940			35883	2239	24589	24641	41424;41425	41424					0.03251342357907561
KTTNVRQTY	9	Unmodified	_KTTNVRQTY_					0	0	0		nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7986450195312	2	555.798737	1109.58292	-0.12344	-6.8608E-05	-0.3633	-0.00020192	-0.48674	-0.00027053	555.7984979553789	21.731	0.62669	21.54	21.226	21.853	-0.19072					27	12	3	0	0	0	0.2101	3	695	685;695;705		87.696	23.438	1	578650			35884	2239	24589	24641	41426;41427;41428	41427					0.03251342357907561
KTTNVRQTY	9	Unmodified	_KTTNVRQTY_					0	0	0		nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	555.798737	1109.58292	-1.3132	-0.0007299	0.31715	0.00017627	-0.99609	-0.00055363	555.7988174099588	21.579	0.29014	21.367	21.216	21.506	-0.2128	-0.039722	0.0009409	NaN	87.696	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22149			35885	2239	24589	24641							0.03251342357907561
KTTNWRLSE	9	Unmodified	_KTTNWRLSE_					0	0	0		ENST00000281708.8_1_4:153332893-153332968:-|nuORF	ENST00000281708.8_1_4:153332893-153332968:-|nuORF	ENST00000281708.8_1_4:153332893-153332968:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3130493164062	2	567.798737	1133.58292	0.16836	9.5595E-05	2.7274	0.0015486	2.8957	0.0016442	567.799972942695	61.777	0.57632	61.55	61.298	61.874	-0.22663					42	14	4	0	0	0	0.024511	1	7104	7104		32.812	15.447	1	1098400			35886	11722	24590	24642	41429	41429					0.02147342357875459
KTTPTGWTL	9	Unmodified	_KTTPTGWTL_					0	0	0		ENSG00000223572|ENST00000413453|CKMT1A;ENSG00000237289|ENST00000441322|CKMT1B;nc|ENSG00000237289|P12532-2|CKMT1A	ENSG00000223572|ENST00000413453|CKMT1A	ENSG00000223572|ENST00000413453|CKMT1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.30804443359375	2	502.7742	1003.53385	-0.068334	-3.4357E-05	0.76148	0.00038285	0.69315	0.0003485	502.7743386932159	65.314	0.73795	65.351	65.007	65.745	0.037384					34	20	2	0	0	0	0.024427	1	7629	7629		26.693	0	1	454750			35887	10640	24591	24643	41430	41430					0.03222054068965008
KTTRIPQLL	9	Unmodified	_KTTRIPQLL_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.8047485351562	2	535.340041	1068.66553	-0.56504	-0.00030249	0.70427	0.00037703	0.13924	7.4539E-05	535.340188298742	66.276	0.46127	65.994	65.711	66.173	-0.28149					25	11	3	0	0	0	0.024319	1	7871	7871		39.253	0	1	284570			35888	4576	24592	24644	41431	41431					0.1339428415672046
KTTSESTPE	9	Unmodified	_KTTSESTPE_					0	0	0		PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant;ENSG00000154415|ENST00000284601|PPP1R3A	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2923278808594	2	490.232561	978.45057	-0.22934	-0.00011243	4.3395	0.0021274	4.1102	0.0020149	490.23403837905937	37.274	0.48877	37.306	37.074	37.563	0.032269					16	12	2	0	0	0	0.024457	1	2983	2983		15.642	0	1	106560			35889	6409	24593	24645	41432	41432					-0.03951727169567221
KTTSESTPE	9	Unmodified	_KTTSESTPE_					0	0	0		PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant;ENSG00000154415|ENST00000284601|PPP1R3A	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.232561	978.45057	0.30978	0.00015186	2.8153	0.0013802	3.1251	0.001532	490.2338686834789	37.087	0.29475	37.024	36.904	37.198	-0.063385	-0.1412	-0.0005446	NaN	10.265	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94388			35890	6409	24593	24645							-0.03951727169567221
KTTSSLSGKSS	11	Unmodified	_KTTSSLSGKSS_					0	0	0			REV__ENST00000331825.10_1_19:49469930-49470038:+|nuORF	REV__ENST00000331825.10_1_19:49469930-49470038:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.821044921875	2	541.788035	1081.56152	-0.31457	-0.00017043	2.2222	0.001204	1.9077	0.0010336	541.7895458802509	106.11	0.68815	105.99	105.67	106.36	-0.1238					41	25	2	0	0	0	0.024731	1	13196	13196		11.097	0	1	110460	+		35891	30482	24594	24646	41433	41433					0.02399912538544413
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2818908691406	2	481.281857	960.549162	0.35786	0.00017223	-0.47549	-0.00022884	-0.11762	-5.661E-05	481.2815012913809	46.325	0.87405	46.325	46.056	46.93	0					66	23	4	0	0	0	0.12914	1	4576	4576		104.06	29.802	1	4058200			35892	3480	24595	24647	41434	41434					0.06730920866141332
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2821044921875	2	481.281857	960.549162	-0.94954	-0.000457	1.029	0.00049525	0.079474	3.8249E-05	481.28221573115604	46.401	0.82344	46.25	45.954	46.777	-0.15156					66	22	4	0	0	0	0.14181	3	4565	4552;4565;4577		101.25	16.301	1	3609700			35893	3480	24595	24647	41435;41436;41437	41436					0.06730920866141332
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2821350097656	2	481.281857	960.549162	-0.2328	-0.00011204	0.33446	0.00016097	0.10165	4.8925E-05	481.28189540539114	46.239	0.76473	46.291	46.031	46.796	0.051395					63	21	4	0	0	0	0.17845	1	4490	4490		93.143	18.888	1	4519700			35894	3480	24595	24647	41438	41438					0.06730920866141332
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.281857	960.549162	0.49251	0.00023703	-0.25936	-0.00012482	0.23315	0.00011221	481.281624706596	46.3	0.40729	46.203	45.961	46.368	-0.096649	-0.060044	-0.00060716	NaN	104.06	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344540			35895	3480	24595	24647							0.06730920866141332
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.281857	960.549162	-0.26306	-0.0001266	0.78792	0.00037921	0.52486	0.00025261	481.28206299451	46.566	0.4163	46.305	46.044	46.461	-0.26118	0.041329	0.00040091	NaN	104.06	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312130			35896	3480	24595	24647							0.06730920866141332
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.281857	960.549162	-0.41885	-0.00020158	0.6848	0.00032958	0.26596	0.000128	481.28201426332373	46.408	0.60637	46.206	45.93	46.536	-0.20226	-0.057425	0.00030165	NaN	104.06	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315880			35897	3480	24595	24647							0.06730920866141332
KTTVPALLGGQ	11	Unmodified	_KTTVPALLGGQ_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.308349609375	2	542.821681	1083.62881	-0.96447	-0.00052353	4.4442	0.0024124	3.4797	0.0018889	542.8236971264803	80.419	0.4212	80.419	80.205	80.626	0					14	9	2	0	0	0	0.024765	1	9975	9975		27.047	0	1	56437			35898	5011	24596	24648	41439	41439					0.09033987540146882
KTTVPALLGGQ	11	Unmodified	_KTTVPALLGGQ_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.821681	1083.62881	-0.14409	-7.8213E-05	4.3763	0.0023756	4.2322	0.0022974	542.8236329950599	80.424	0.2866	80.186	80.041	80.328	-0.23784	-0.10606	-4.2226E-05	NaN	45.022	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138340			35899	5011	24596	24648							0.09033987540146882
KTTVSLLSV	9	Unmodified	_KTTVSLLSV_					0	0	0		ENST00000480292.5_1_3:158542010-158546768:+|nuORF	ENST00000480292.5_1_3:158542010-158546768:+|nuORF	ENST00000480292.5_1_3:158542010-158546768:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2607421875	2	474.292225	946.569897	0.63792	0.00030256	1.385	0.0006569	2.0229	0.00095946	474.2919267507338	42.901	0.62048	42.929	42.643	43.263	0.027523					22	16	2	0	0	0	0.024523	1	3974	3974		10.265	0	1	76294			35900	15192	24597	24649	41440	41440					0.0944751124582126
KTVAGGAWTY	10	Unmodified	_KTVAGGAWTY_					0	0	0		ENST00000478153.1_1_2:217363923-217364755:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.2711181640625	2	527.271824	1052.5291	-0.27926	-0.00014725	-0.15636	-8.2445E-05	-0.43562	-0.00022969	527.2715978257855	47.087	0.76731	46.991	46.754	47.521	-0.096649					58	20	4	0	0	0	0.029455	3	4586	4586;4597;4608		155.58	70.424	1	3685700			35901	15131	24598	24650	41441;41442;41443	41441					0.004931699261760514
KTVAGGAWTY	10	Unmodified	_KTVAGGAWTY_					0	0	0		ENST00000478153.1_1_2:217363923-217364755:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.2719116210938	2	527.271824	1052.5291	-0.031905	-1.6823E-05	-0.3846	-0.00020279	-0.41651	-0.00021961	527.271378071754	47.45	0.72791	47.18	46.874	47.601	-0.26939					70	19	5	0	0	0	0.029455	3	4632	4620;4632;4645		155.58	54.332	1	3620700			35902	15131	24598	24650	41444;41445;41446	41445					0.004931699261760514
KTVAGGAWTY	10	Unmodified	_KTVAGGAWTY_					0	0	0		ENST00000478153.1_1_2:217363923-217364755:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000478153.1_1_2:217363923-217364755:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.271484375	2	527.271824	1052.5291	-0.10864	-5.7281E-05	-0.49678	-0.00026194	-0.60542	-0.00031922	527.2713349158003	47.249	0.67076	47.055	46.779	47.45	-0.19387					62	17	5	0	0	0	0.069016	3	4607	4596;4607;4619		143.37	42.121	1	3807600			35903	15131	24598	24650	41447;41448;41449	41448					0.004931699261760514
KTVAIPALS	9	Unmodified	_KTVAIPALS_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.27105712890625	2	450.28166	898.548768	-0.67854	-0.00030553	0.60023	0.00027027	-0.078307	-3.526E-05	450.2817553872417	75.212	0.6763	75.212	74.875	75.551	0					27	17	2	0	0	0	0.023817	1	9240	9240		42.396	10.441	1	252000			35904	5249	24599	24651	41450	41450					0.09543545936935516
KTVAIPALS	9	Unmodified	_KTVAIPALS_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2711486816406	2	450.28166	898.548768	-0.13906	-6.2618E-05	0.46697	0.00021027	0.32791	0.00014765	450.2817408807814	75.544	0.52468	75.299	74.918	75.443	-0.24455					22	13	2	0	0	0	0.024319	1	9229	9229		47.657	12.039	1	243230			35905	5249	24599	24651	41451	41451					0.09543545936935516
KTVAIPALS	9	Unmodified	_KTVAIPALS_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.27117919921875	2	450.28166	898.548768	0.23937	0.00010778	-0.15702	-7.0705E-05	0.082345	3.7078E-05	450.281477879207	75.328	0.56617	75.338	74.973	75.539	0.010376					27	14	3	0	0	0	0.024021	1	9169	9169		68.787	17.451	1	247890			35906	5249	24599	24651	41452	41452					0.09543545936935516
KTVAKHPAGSL	11	Unmodified	_KTVAKHPAGSL_					0	0	0		ENSG00000214652|ENST00000456806|ZNF727	ENSG00000214652|ENST00000456806|ZNF727	ENSG00000214652|ENST00000456806|ZNF727	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.7992553710938	2	554.827298	1107.64004	-0.2682	-0.0001488	0.35407	0.00019645	0.085869	4.7643E-05	554.8273264913685	40.903	0.48404	40.926	40.663	41.147	0.023006					22	13	2	0	0	0	0.024774	1	3614	3614		38.754	0	1	456420			35907	10560	24600	24652	41453	41453					0.09052809634272307
KTVDKFNEW	9	Unmodified	_KTVDKFNEW_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.7960815429688	2	583.795663	1165.57677	-0.33592	-0.00019611	0.024167	1.4109E-05	-0.31175	-0.000182	583.7955982019046	41.599	0.88691	41.463	41.137	42.024	-0.13553					67	23	4	0	0	0	0.10464	1	3698	3698		109.48	31.215	1	2071400			35908	9878	24601	24653	41454	41454					0.000608241263535092
KTVDKFNEW	9	Unmodified	_KTVDKFNEW_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.7955932617188	2	583.795663	1165.57677	-1.1402	-0.00066566	0.55674	0.00032502	-0.58348	-0.00034063	583.7959603444995	41.824	0.88545	41.592	41.232	42.117	-0.23186					65	23	4	0	0	0	0.034407	2	3714	3714;3727		138.06	44.919	1	2372100			35909	9878	24601	24653	41455;41456	41455					0.000608241263535092
KTVDKFNEW	9	Unmodified	_KTVDKFNEW_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.7960815429688	2	583.795663	1165.57677	-0.64102	-0.00037423	-0.085765	-5.0069E-05	-0.72679	-0.0004243	583.7956271716038	41.885	0.71774	41.655	41.313	42.031	-0.23029					64	19	5	0	0	0	0.071379	1	3715	3715		120.87	48.991	1	2000700			35910	9878	24601	24653	41457	41457					0.000608241263535092
KTVGRLFTIGR	11	Unmodified	_KTVGRLFTIGR_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.377197265625	2	624.382771	1246.75099	-0.40996	-0.00025597	-3.0097	-0.0018792	-3.4197	-0.0021352	624.3808030814138	106	0.28818	106	105.83	106.12	0.00014496					19	9	3	0	0	0	0.9728	1	13543	13543		42.864	1.4377	1	145170			35911	9828	24602	24654	41458	41458					0.13748449342347158
KTVHSMVQ	8	Unmodified	_KTVHSMVQ_					0	0	0		nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;ENST00000548220.1_1_12:71054984-71148538:-|nuORF;ENST00000551219.5_1_12:71092119-71148195:-|nuORF	nc|ENSG00000153233|Q15256-5|PTPRR	nc|ENSG00000153233|Q15256-5|PTPRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2647399902344	2	465.247295	928.480036	0.193	8.9791E-05	-0.6471	-0.00030106	-0.45411	-0.00021127	465.2471261289353	58.634	0.18951	58.447	58.348	58.538	-0.18705					8	4	3	0	0	0	0.027866	1	6628	6628		29.15	4.9468	1	158190			35912	6332	24603	24655	41459	41459					0.012935583655917071
KTVIANPVL	9	Unmodified	_KTVIANPVL_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.80303955078125	2	477.80276	953.590967	-1.0244	-0.00048946	1.3307	0.00063583	0.30635	0.00014637	477.8030135328487	33.586	0.90438	33.42	33.117	34.021	-0.16565					58	22	5	0	0	0	0.80658	1	2386	2386		38.806	1.647	1	2197700			35913	2544	24604	24656	41460	41460					0.11231521345325746
KTVKAEID	8	Unmodified	_KTVKAEID_					0	0	0			REV__ENST00000587176.5_1_19:55666069-55669122:-|nuORF	REV__ENST00000587176.5_1_19:55666069-55669122:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2424621582031	2	452.260925	902.507297	-0.073217	-3.3113E-05	-3.594	-0.0016254	-3.6672	-0.0016585	452.2593083827904	54.01	0.36174	53.812	53.769	54.131	-0.19739					14	10	2	0	0	0	0.027866	1	5740	5740		38.806	0	1	462580	+		35914	35623	24605	24657	41461	41461					0.052143651776077604
KTVKIDEPL	9	Unmodified	_KTVKIDEPL_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8001098632812	2	521.810782	1041.60701	-0.79281	-0.0004137	-2.5634	-0.0013376	-3.3562	-0.0017513	521.8093665895577	48.066	0.6734	47.913	47.795	48.469	-0.15301					28	19	2	0	0	0	0.024438	1	4947	4947		29.17	2.4771	1	851360	+		35915	36443	24606	24658	41462	41462					0.0878718279154782
KTVKIDEPL	9	Unmodified	_KTVKIDEPL_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.810782	1041.60701	-0.9793	-0.00051101	-3.0944	-0.0016147	-4.0737	-0.0021257	521.8095592889358	47.86	0.49985	47.86	47.811	48.311	0	0.027311	0.0020522	NaN	41.427	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1293800	+		35916	36443	24606	24658							0.0878718279154782
KTVKIDEPL	9	Unmodified	_KTVKIDEPL_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.810782	1041.60701	-0.77491	-0.00040436	-4.6537	-0.0024283	-5.4286	-0.0028327	521.8095747123049	47.798	0.66227	47.857	47.708	48.37	0.059097	0.024578	0.000425	NaN	41.427	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044000	+		35917	36443	24606	24658							0.0878718279154782
KTVKIDEPL	9	Unmodified	_KTVKIDEPL_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.810782	1041.60701	-0.23467	-0.00012245	-8.3917	-0.0043789	-8.6264	-0.0045013	521.8065351858424	47.976	0.32401	47.7	47.527	47.851	-0.27598	-0.13237	-0.0034761	NaN	41.427	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96258	+		35918	36443	24606	24658							0.0878718279154782
KTVKKTKS	8	Unmodified	_KTVKKTKS_					0	0	0			REV__DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	REV__DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	461.2557373046875	2	460.300384	918.586216	0.097722	4.4981E-05	2.8495	0.0013116	2.9472	0.0013566	460.3019595325944	46.144	0.44566	46.048	45.777	46.223	-0.096649					22	11	3	0	0	0	0.027866	1	4427	4427		11.511	0	1	437130	+		35919	19660	24607	24659	41463	41463					0.12366637202569564
KTVKRLRK	8	Unmodified	_KTVKRLRK_					0	0	0		ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.83935546875	2	514.856193	1027.69783	-0.60556	-0.00031177	0.74265	0.00038236	0.1371	7.0585E-05	514.8566197315541	57.185	0.10402	57.017	56.967	57.071	-0.1672					4	2	2	0	0	0	0.027866	1	6230	6230		24.203	0	1	51153			35920	10466	24608	24660	41464	41464					0.18509116350355725
KTVLILFLT	9	Unmodified	_KTVLILFLT_					0	0	0		ENST00000464316.5_1_3:156870794-156871031:-|nuORF	ENST00000464316.5_1_3:156870794-156871031:-|nuORF	ENST00000464316.5_1_3:156870794-156871031:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.7791137695312	2	524.344261	1046.67397	-0.84282	-0.00044193	0.19458	0.00010203	-0.64824	-0.0003399	524.3441499706056	78.461	0.49948	78.461	78.242	78.741	0					17	11	2	0	0	0	0.024381	1	9702	9702		29.15	7.1897	1	95065			35921	14758	24609	24661	41465	41465					0.15249838073305
KTVLILFLT	9	Unmodified	_KTVLILFLT_					0	0	0		ENST00000464316.5_1_3:156870794-156871031:-|nuORF	ENST00000464316.5_1_3:156870794-156871031:-|nuORF	ENST00000464316.5_1_3:156870794-156871031:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.344261	1046.67397	0.099837	5.2349E-05	-0.45342	-0.00023775	-0.35358	-0.0001854	524.3438394503166	78.293	0.42664	78.137	78	78.427	-0.15591	-0.23326	-0.00031641	NaN	21.96	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80740			35922	14758	24609	24661							0.15249838073305
KTVLKREHG	9	Unmodified	_KTVLKREHG_					0	0	0			REV__ENSG00000176046|ENST00000324873|NUPR1	REV__ENSG00000176046|ENST00000324873|NUPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7852783203125	2	534.31964	1066.62473	1.4602	0.00078023	-1.7596	-0.00094021	-0.2994	-0.00015998	534.3186263533028	23.783	0.43351	23.592	23.36	23.794	-0.19117					21	9	3	0	0	0	0.024447	1	964	964		40.778	1.5253	1	162350	+		35923	26992	24610	24662	41466	41466					0.09407942837083283
KTVLQQVI	8	Unmodified	_KTVLQQVI_					0	0	0		ENSG00000146282|ENST00000369536|RARS2	ENSG00000146282|ENST00000369536|RARS2	ENSG00000146282|ENST00000369536|RARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2519836425781	2	464.794935	927.575317	-0.11845	-5.5056E-05	-0.28921	-0.00013442	-0.40766	-0.00018948	464.794729892263	27.556	0.39001	27.314	27.076	27.466	-0.24217					11	8	2	0	0	0	0.027866	1	1538	1538		31.955	12.595	1	41263			35924	5873	24611	24663	41467	41467					0.10863234828264012
KTVPILPLS	9	Unmodified	_KTVPILPLS_					0	0	0		FREM2|p.E575K|1|0.33|ENSG00000150893|chr13:38689067-38689067|G/A|missense_variant	FREM2|p.E575K|1|0.33|ENSG00000150893|chr13:38689067-38689067|G/A|missense_variant	FREM2|p.E575K|1|0.33|ENSG00000150893|chr13:38689067-38689067|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.3123779296875	2	484.312961	966.611368	0.020142	9.7552E-06	-0.69318	-0.00033571	-0.67303	-0.00032596	484.31221817997033	99.631	2.0202	99.626	99.21	101.23	-0.0050888					75	50	3	0	0	0	0.23085	1	12641	12641		84.916	5.4645	1	1132000			35925	17658	24612	24664	41468	41468					0.12672692005139652
KTVPLRELF	9	Unmodified	_KTVPLRELF_					0	0	0			REV__ENST00000520753.5_1_19:48753009-48759142:-|nuORF	REV__ENST00000520753.5_1_19:48753009-48759142:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3059692382812	2	551.834591	1101.65463	-0.29983	-0.00016546	-0.68158	-0.00037612	-0.98141	-0.00054157	551.8344330324784	58.766	0.55278	58.578	58.266	58.819	-0.18795					26	13	3	0	0	0	0.024397	1	6458	6458		24.519	0	1	228800	+		35926	34302	24613	24665	41469	41469					0.10786881782405544
KTVRANKP	8	Unmodified	_KTVRANKP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2825622558594	2	457.282526	912.550499	-0.35785	-0.00016364	-0.065891	-3.0131E-05	-0.42374	-0.00019377	457.2824904903936	34.734	1.387	34.784	34.441	35.828	0.050251					74	35	5	0	0	0	1.0574	1	2542	2542		24.203	1.1603	1	7974600	+		35927	25017	24614	24666	41470	41470					0.09072599745547905
KTVRLVTNT	9	Unmodified	_KTVRLVTNT_					0	0	0			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.251708984375	2	516.314023	1030.61349	0.16281	8.4063E-05	3.2989	0.0017033	3.4617	0.0017873	516.3157212572853	36.167	0.41938	35.95	35.746	36.165	-0.21661					14	11	2	0	0	0	0.024438	1	2797	2797		22.58	0	1	126720	+		35928	27834	24615	24667	41471	41471					0.0994112074295117
KTVRVRVR	8	Unmodified	_KTVRVRVR_					0	0	0			REV__TSFM-OS9|6|fusion	REV__TSFM-OS9|6|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.307861328125	2	507.338167	1012.66178	-0.77867	-0.00039505	-2.7157	-0.0013778	-3.4944	-0.0017729	507.3370715407015	43.604	0.24482	43.367	43.174	43.419	-0.23737					16	6	3	0	0	0	0.027866	1	3975	3975		24.203	0	1	309420	+		35929	23550	24616	24668	41472	41472					0.15595659173504828
KTVSITGPL	9	Unmodified	_KTVSITGPL_					0	0	0			REV__chr22:45371587-45372155|106|10.7|0.59|4.17|-|2|SMC1B,SMC1B|2	REV__chr22:45371587-45372155|106|10.7|0.59|4.17|-|2|SMC1B,SMC1B|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2689208984375	2	458.279118	914.543683	0.054789	2.5108E-05	0.75638	0.00034663	0.81117	0.00037174	458.27938673208763	48.357	0.60693	48.423	48.228	48.835	0.066795					23	16	2	0	0	0	0.02435	1	4831	4831		26.693	0	1	198780	+		35930	19429	24617	24669	41473	41473					0.08299242074315316
KTVTRDVI	8	Unmodified	_KTVTRDVI_					0	0	0		ENSG00000135972|ENST00000258455|MRPS9;SIK3-MRPS9|1|fusion	ENSG00000135972|ENST00000258455|MRPS9	ENSG00000135972|ENST00000258455|MRPS9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2610778808594	2	466.282192	930.549831	0.53646	0.00025014	-1.3066	-0.00060925	-0.77015	-0.00035911	466.2815117852764	45.096	0.68733	45.14	44.756	45.444	0.043877					55	19	4	0	0	0	0.027866	1	4243	4243		40.573	6.651	1	1556300			35931	4962	24618	24670	41474	41474					0.08177760305829906
KTVVGPRPDL	10	Unmodified	_KTVVGPRPDL_					0	0	0			REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-2|TRAK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.2820434570312	2	541.321848	1080.62914	-1.5836	-0.00085724	3.8185	0.0020671	2.2349	0.0012098	541.3240060653028	80.646	1.0106	80.669	80.318	81.329	0.02346					43	24	3	0	0	0	0.03519	1	9907	9907		38.754	13.18	1	239010	+		35932	27496	24619	24671	41475	41475					0.09205407259969434
KTVVTEHAL	9	Unmodified	_KTVVTEHAL_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.N821Tfs*6|1|0.08|ENSG00000082516|chr5:154905412-154905415|AATG/-|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.20819091796875	2	499.287474	996.560395	-0.15958	-7.9679E-05	-0.79391	-0.00039639	-0.95349	-0.00047607	499.2867628307275	41.693	0.50486	41.57	41.456	41.961	-0.12299					17	13	2	0	0	0	0.024457	1	3706	3706		10.265	0	1	105560			35933	1736	24620	24672	41476	41476					0.061977429602734446
KTVVVKNTL	9	Unmodified	_KTVVVKNTL_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2801818847656	2	501.321317	1000.62808	-0.4024	-0.00020173	-1.3925	-0.0006981	-1.7949	-0.00089983	501.3203892395407	34.719	0.4267	34.719	34.479	34.906	0					24	10	3	0	0	0	0.024541	1	2606	2606		23.523	12.657	1	98522			35934	4917	24621	24673	41477	41477					0.1277919289109377
KTWAPVSR	8	Unmodified	_KTWAPVSR_					0	0	0		ENST00000397077.5_2_3:10575756-10661627:-|nuORF	ENST00000397077.5_2_3:10575756-10661627:-|nuORF	ENST00000397077.5_2_3:10575756-10661627:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2952575683594	2	472.769252	943.52395	-0.25694	-0.00012148	3.6973	0.001748	3.4403	0.0016265	472.7709746693127	40.791	0.41199	40.655	40.418	40.83	-0.13553					17	10	2	0	0	0	0.027866	1	3527	3527		40.778	0	1	261540			35935	13576	24622	24674	41478	41478					0.04992910854230104
KTWKVEIV	8	Unmodified	_KTWKVEIV_					0	0	0			REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.8005676269531	2	501.80276	1001.59097	-0.8903	-0.00044676	-4.1519	-0.0020834	-5.0422	-0.0025302	501.8007093755976	46.544	1.5811	46.391	46.024	47.606	-0.153					153	43	6	0	0	0	0.77775	1	4641	4641		60.972	0	1	41649000	+		35936	28640	24623	24675	41479	41479					0.09023521345318386
KTWPYVVL	8	Unmodified	_KTWPYVVL_					0	0	0			REV__HBE1|p.Q40K|1|0.27|ENSG00000213931|chr11:5269651-5269651|G/T|missense_variant	REV__HBE1|p.Q40K|1|0.27|ENSG00000213931|chr11:5269651-5269651|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.27508544921875	2	503.292028	1004.5695	-0.74801	-0.00037647	-4.141	-0.0020841	-4.889	-0.0024606	503.29006251986317	56.677	0.46959	56.513	56.275	56.745	-0.16431					30	12	3	0	0	0	0.027866	1	6317	6317		28.254	4.0515	1	1831300	+		35937	36091	24624	24676	41480	41480					0.06740136316591361
KTWPYVVL	8	Unmodified	_KTWPYVVL_					0	0	0			REV__HBE1|p.Q40K|1|0.27|ENSG00000213931|chr11:5269651-5269651|G/T|missense_variant	REV__HBE1|p.Q40K|1|0.27|ENSG00000213931|chr11:5269651-5269651|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27508544921875	2	503.292028	1004.5695	-0.45099	-0.00022698	-4.3128	-0.0021706	-4.7638	-0.0023976	503.2899632448141	56.304	0.58355	56.402	56.136	56.72	0.097893					36	15	3	0	0	0	0.027866	1	6222	6222		33.516	3.0119	1	1493300	+		35938	36091	24624	24676	41481	41481					0.06740136316591361
KTWSVFLLP	9	Unmodified	_KTWSVFLLP_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.7820434570312	2	545.81841	1089.62227	-0.68463	-0.00037369	0.24826	0.0001355	-0.43638	-0.00023818	545.8184719565257	75.154	0.67843	75.164	74.895	75.574	0.010376					44	17	3	0	0	0	0.024506	1	9205	9205		16.473	0	1	1584200	+		35939	20753	24625	24677	41482	41482					0.08104094379427806
KTWTHADL	8	Unmodified	_KTWTHADL_					0	0	0			REV__ENSG00000189037|ENST00000339042|DUSP21	REV__ENSG00000189037|ENST00000339042|DUSP21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.313232421875	2	486.250892	970.48723	-1.2932	-0.0006288	1.2681	0.00061663	-0.025023	-1.2167E-05	486.2513773112096	44.435	0.46289	44.291	44.099	44.561	-0.14471					21	13	2	0	0	0	0.027866	1	4201	4201		30.504	0	1	279110	+		35940	28086	24626	24678	41483	41483					0.0008061423766321241
KTWVLAPKI	9	Unmodified	_KTWVLAPKI_					0	0	0		GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant;GABRG1|p.N214Mfs*12|1|0.48|ENSG00000163285|chr4:46058607-46058607|T/-|frameshift_variant;GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant;GABRG1|p.D265Efs*32|1|0.11|ENSG00000163285|chr4:46058338-46058339|-/T|frameshift_variant;ENSG00000163285|ENST00000295452|GABRG1;GABRG1|p.H60N|1|0.11|ENSG00000163285|chr4:46097276-46097276|G/T|missense_variant	GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2740478515625	2	528.334227	1054.6539	-1.4046	-0.00074208	-2.4489	-0.0012938	-3.8534	-0.0020359	528.332949620192	46.318	0.49243	46.167	45.954	46.446	-0.15157					36	13	4	0	0	0	0.024447	1	4523	4523		32.812	4.9302	1	576460			35941	7055	24627	24679	41484	41484					0.12876087133349756
KTWYVVPPE	9	Unmodified	_KTWYVVPPE_					0	0	0		ENSG00000255855|ENST00000545950|KDM4F;ENSG00000235268|ENST00000450979|KDM4E	ENSG00000255855|ENST00000545950|KDM4F;ENSG00000235268|ENST00000450979|KDM4E	ENSG00000235268|ENST00000450979|KDM4E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7929077148438	2	559.797675	1117.5808	-0.72007	-0.00040309	-0.74883	-0.00041919	-1.4689	-0.00082228	559.7972127063597	52.322	0.72207	52.204	51.758	52.48	-0.11875					27	18	2	0	0	0	0.024405	1	5386	5386		44.117	7.67	1	257470			35942	10899;10730	24628	24680	41485	41485					0.02670913620090687
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	631.3269653320312	2	631.326796	1260.63904	-0.79343	-0.00050091	0.8945	0.00056472	0.10107	6.3808E-05	631.3271691026731	56.509	0.70958	56.341	56.041	56.751	-0.1672					55	17	5	0	0	0	0.0039454	3	6125	6116;6125;6139		197.79	85.382	1	2985500			35943	6198	24629	24681	41486;41487;41488	41487					0.019145504747029918
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.2204895019531	3	421.22029	1260.63904	-0.12759	-5.3745E-05	0.69976	0.00029475	0.57217	0.00024101	421.22056498337747	56.512	0.7525	56.345	55.962	56.714	-0.1672					54	18	4	0	0	0	0.70529	1	6120	6120		66.92	10.288	1	2963100			35944	6198	24629	24681	41489	41489					0.019145504747029918
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	631.3272705078125	2	631.326796	1260.63904	-0.29717	-0.00018761	0.47798	0.00030176	0.18081	0.00011415	631.3269740621056	56.53	0.69748	56.321	56.005	56.703	-0.20883					55	17	5	0	0	0	0.0081456	2	6127	6127;6138		187.5	85.903	1	2501000			35945	6198	24629	24681	41490;41491	41490					0.019145504747029918
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.2206726074219	3	421.22029	1260.63904	0.39701	0.00016723	-0.044172	-1.8606E-05	0.35284	0.00014862	421.2202716693501	56.57	0.78614	56.345	55.99	56.776	-0.2248					61	19	4	0	0	0	0.82108	1	6114	6114		59.265	9.7988	1	2671000			35946	6198	24629	24681	41492	41492					0.019145504747029918
KTYGEIFEKF	10	Unmodified	_KTYGEIFEKF_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-2|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	631.3278198242188	2	631.326796	1260.63904	-0.10127	-6.3934E-05	0.16369	0.00010334	0.062424	3.941E-05	631.3267009081213	56.567	0.70882	56.343	56.029	56.738	-0.2248					55	17	4	0	0	0	0.085579	1	6127	6127		150.81	57.667	1	2597800			35947	6198	24629	24681	41493	41493					0.019145504747029918
KTYKQIEKNW	10	Unmodified	_KTYKQIEKNW_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.2396240234375	3	446.578588	1336.71394	-0.08138	-3.6342E-05	-0.082317	-3.6761E-05	-0.1637	-7.3104E-05	446.5783879343636	54.762	0.53908	54.531	54.246	54.785	-0.23087					27	14	2	0	0	0	0.03519	1	5819	5819		31.634	9.8538	1	279040			35948	3726	24630	24682	41494	41494					0.059047330059456726
KTYKQIEKNW	10	Unmodified	_KTYKQIEKNW_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.2402038574219	3	446.578588	1336.71394	0.97664	0.00043615	-1.1849	-0.00052916	-0.20828	-9.3015E-05	446.57792648861465	54.726	0.521	54.52	54.237	54.758	-0.20613					24	13	2	0	0	0	0.03519	1	5807	5807		43.651	7.3331	1	315910			35949	3726	24630	24682	41495	41495					0.059047330059456726
KTYLPTFETT	10	Unmodified	_KTYLPTFETT_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5721435546875	3	400.876411	1199.6074	0.7707	0.00030895	-3.7122	-0.0014881	-2.9415	-0.0011792	400.8755207475852	33.636	0.30865	33.436	33.209	33.517	-0.20019					9	7	2	0	0	0	0.03519	1	2387	2387		20.03	0	1	48389			35950	6398	24631	24683	41496	41496					0.015585577207502865
KTYNEPGSQVF	11	Unmodified	_KTYNEPGSQVF_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	635.3084716796875	2	635.309135	1268.60372	-0.60705	-0.00038566	0.4824	0.00030647	-0.12465	-7.9192E-05	635.3093308686998	46.232	0.72175	45.97	45.701	46.423	-0.26118					56	18	4	0	0	0	0.85525	1	4421	4421		54.343	7.8866	1	3095700			35951	7175	24632	24684	41497	41497					-0.01984112053082754
KTYPPFVNF	9	Unmodified	_KTYPPFVNF_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.7926025390625	2	556.792392	1111.57023	0.27128	0.00015104	-1.2737	-0.00070918	-1.0024	-0.00055813	556.791366092089	67.206	1.7647	66.958	66.673	68.437	-0.24839					97	43	4	0	0	0	0.071379	4	7714	7704;7714;7726;7740		120.87	57.562	1	1931600			35952	18187	24633	24685	41498;41499;41500;41501	41499					0.01890930965669213
KTYPPFVNF	9	Unmodified	_KTYPPFVNF_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.7909545898438	2	556.792392	1111.57023	-0.32852	-0.00018292	-0.68848	-0.00038334	-1.017	-0.00056626	556.7917339120891	67.16	1.8234	66.936	66.626	68.449	-0.22374					100	46	4	0	0	0	0.056725	4	7717	7717;7729;7741;7753		126.24	52.268	1	2055600			35953	18187	24633	24685	41502;41503;41504;41505	41502					0.01890930965669213
KTYPPFVNF	9	Unmodified	_KTYPPFVNF_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2;nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.7920532226562	2	556.792392	1111.57023	-0.55123	-0.00030692	-0.46643	-0.0002597	-1.0177	-0.00056662	556.7919132435347	67.102	1.7431	66.857	66.64	68.383	-0.24517					84	43	3	0	0	0	0.087669	4	7704	7704;7717;7730;7742		114.89	48.465	1	2211200			35954	18187	24633	24685	41506;41507;41508;41509	41506					0.01890930965669213
KTYRFDSEVLL	11	Unmodified	_KTYRFDSEVLL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.86322021484375	3	457.581998	1369.72417	-0.9604	-0.00043946	-0.72786	-0.00033305	-1.6883	-0.00077252	457.5811113759713	38.581	0.11688	38.402	38.305	38.422	-0.17929					4	2	2	0	0	0	0.024779	1	3188	3188		8.0344	0	1	37174			35955	15881	24634	24686	41510	41510					0.05409295940512493
KTYVTLGVAVA	11	Unmodified	_KTYVTLGVAVA_					0	0	0		ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7925415039062	2	561.331882	1120.64921	-1.5864	-0.0008905	-3.8225	-0.0021457	-5.4089	-0.0030362	561.328825182615	51.802	0.77571	51.533	51.242	52.018	-0.26904					43	20	3	0	0	0	0.024762	1	5403	5403		45.972	0	1	2668800			35956	9886	24635	24687	41511	41511					0.09371158199974161
KVAAPVRPF	9	Unmodified	_KVAAPVRPF_					0	0	0		ENST00000585805.5_1_17:40985648-40985726:+|nuORF	ENST00000585805.5_1_17:40985648-40985726:+|nuORF	ENST00000585805.5_1_17:40985648-40985726:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7789001464844	2	492.803094	983.591636	-0.59572	-0.00029357	0.46222	0.00022778	-0.1335	-6.5788E-05	492.8033170396154	49.771	0.45568	49.845	49.654	50.11	0.074196					30	12	3	0	0	0	0.024427	1	5076	5076		51.335	19.381	1	671170			35957	17234	24636	24688	41512	41512					0.09918360785036384
KVAAPVRPF	9	Unmodified	_KVAAPVRPF_					0	0	0		ENST00000585805.5_1_17:40985648-40985726:+|nuORF	ENST00000585805.5_1_17:40985648-40985726:+|nuORF	ENST00000585805.5_1_17:40985648-40985726:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.803094	983.591636	0.19344	9.5326E-05	-4.0548	-0.0019982	-3.8614	-0.0019029	492.8004491248396	50.429	1.0477	50.149	49.802	50.85	-0.27977	0.17526	-0.0036679	NaN	51.335	43	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1228400			35958	17234	24636	24688							0.09918360785036384
KVAASLLAI	9	Unmodified	_KVAASLLAI_					0	0	0			REV__nc|ENSG00000136161|O95199-2|RCBTB2	REV__nc|ENSG00000136161|O95199-2|RCBTB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.29193115234375	2	443.292028	884.569503	-0.33111	-0.00014678	0.52882	0.00023442	0.19771	8.7643E-05	443.29212234490024	33.315	1.2011	33.084	32.752	33.953	-0.23107					72	29	4	0	0	0	0.4752	1	2396	2396		60.972	7.6205	1	2684100	+		35959	23634	24637	24689	41513	41513					0.12260136316592707
KVADEITNI	9	Unmodified	_KVADEITNI_					0	0	0			REV__nc|ENSG00000096717|Q96EB6-2|SIRT1	REV__nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7777099609375	2	501.776939	1001.53933	0.35938	0.00018033	0.98152	0.0004925	1.3409	0.00067283	501.77676366108454	72.009	0.487	71.721	71.313	71.8	-0.28858					31	12	4	0	0	0	0.33245	1	8699	8699		71.296	2.5089	1	2002600	+		35960	20988	24638	24690	41514	41514					0.0386173286074154
KVADTILFL	9	Unmodified	_KVADTILFL_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.30963134765625	2	510.310418	1018.60628	-1.1441	-0.00058383	0.38356	0.00019573	-0.76051	-0.0003881	510.3103388589466	75.601	1.722	75.601	74.875	76.597	0					88	44	4	0	0	0	0.26966	2	9296	9272;9296		79.713	8.4169	1	4412800			35961	7730	24639	24691	41515;41516	41516					0.09772388142516775
KVADTILFL	9	Unmodified	_KVADTILFL_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.31036376953125	2	510.310418	1018.60628	-0.49319	-0.00025168	-0.35418	-0.00018074	-0.84738	-0.00043242	510.30993530224	75.808	1.7132	75.564	74.838	76.551	-0.24455					85	44	4	0	0	0	0.30449	2	9283	9271;9283		75.043	16.261	1	5061200			35962	7730	24639	24691	41517;41518	41518					0.09772388142516775
KVADTILFL	9	Unmodified	_KVADTILFL_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.31011962890625	2	510.310418	1018.60628	0.12972	6.6195E-05	-0.72284	-0.00036887	-0.59312	-0.00030268	510.3098626305178	75.625	1.2837	75.636	75.326	76.61	0.010376					79	33	4	0	0	0	0.16638	1	9218	9218		95.815	23.938	1	4663000			35963	7730	24639	24691	41519	41519					0.09772388142516775
KVADYRMLTN	10	Unmodified	_KVADYRMLTN_					0	0	0		nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;NIPBL-SPEF2|2|fusion;ENST00000503074.1_1_5:35659153-35697983:+|nuORF;nc|ENSG00000152582|Q9C093-3|SPEF2;NIPBL-SPEF2|1|fusion	nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9142761230469	3	404.213141	1209.61759	1.6851	0.00068116	3.5925	0.0014521	5.2776	0.0021333	404.21494120532736	20.557	0.58643	20.361	19.947	20.533	-0.19577					18	11	2	0	0	0	0.03519	1	535	535		18.531	0	1	12860			35964	6283	24640	24692	41520	41520					0.021168421743368526
KVAEVLRAL	9	Unmodified	_KVAEVLRAL_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2076721191406	2	499.821484	997.628415	-0.98775	-0.0004937	1.5469	0.00077318	0.55916	0.00027948	499.82189846162686	43.102	0.45865	42.876	42.675	43.133	-0.22597					15	11	2	0	0	0	0.024313	1	3900	3900		51.193	10.415	1	141620			35965	18558	24641	24693	41521	41521					0.1295061261095043
KVAEVLRAL	9	Unmodified	_KVAEVLRAL_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.821484	997.628415	-0.31426	-0.00015707	0.81938	0.00040954	0.50512	0.00025247	499.8214596649734	43.104	0.35025	42.866	42.639	42.989	-0.23737	0.0080224	0.00012901	NaN	51.193	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117440			35966	18558	24641	24693							0.1295061261095043
KVAGLQSLD	9	Unmodified	_KVAGLQSLD_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7952575683594	2	465.766374	929.518196	-1.325	-0.00061713	1.5084	0.00070256	0.18343	8.5436E-05	465.7668537525388	33.625	0.78502	33.459	33.236	34.021	-0.16565					39	19	3	0	0	0	0.023417	1	2434	2434		49.442	10.635	1	1058000	+		35967	28212	24642	24694	41522	41522					0.05061767551910634
KVAGQLLPLA	10	Unmodified	_KVAGQLLPLA_					0	0	0		ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3239440917969	2	505.32386	1008.63317	-0.021531	-1.088E-05	-1.0461	-0.00052863	-1.0676	-0.00053951	505.32367507392587	79.153	5.1565	79.172	78.693	83.85	0.018677					323	123	5	0	0	0	1.0393	1	9766	9766		40.778	1.5253	1	98007000			35968	1194	24643	24695	41523	41523					0.12919496753704607
KVAGQLLPLA	10	Unmodified	_KVAGQLLPLA_					0	0	0		ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.32373046875	2	505.32386	1008.63317	0.43061	0.0002176	-1.1927	-0.00060271	-0.76212	-0.00038512	505.3233501309143	79.104	3.6681	78.849	78.471	82.139	-0.25471					219	87	5	0	0	0	0.91051	1	9412	9412		53.351	3.8154	1	36200000			35969	1194	24643	24695	41524	41524					0.12919496753704607
KVAIFTLIN	9	Unmodified	_KVAIFTLIN_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7887878417969	2	509.81841	1017.62227	-0.44291	-0.0002258	0.69956	0.00035665	0.25666	0.00013085	509.8171398625056	85.324	0.21087	85.267	85.186	85.397	-0.057617					6	4	2	0	0	0	0.024523	1	10684	10684		21.96	3.6355	1	24949			35970	9982	24644	24696	41525	41525					0.11416094379410424
KVAKLLTDY	9	Unmodified	_KVAKLLTDY_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2788696289062	2	525.813325	1049.6121	-0.17382	-9.1398E-05	-0.22399	-0.00011778	-0.39781	-0.00020917	525.8130776969791	86.559	1.6488	86.582	85.616	87.265	0.023666					78	38	3	0	0	0	0.024319	1	10790	10790		56.721	8.8055	1	217770	+		35971	21895	24645	24697	41526	41526					0.08927486654192762
KVAKPKEPI	9	Unmodified	_KVAKPKEPI_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.3236999511719	2	505.32386	1008.63317	-0.41311	-0.00020875	-0.55573	-0.00028082	-0.96884	-0.00048958	505.3239398964379	79.056	3.538	79.056	78.616	82.154	0					279	85	6	0	0	0	0.53979	1	9765	9765		56.721	7.2795	1	98664000			35972	8474	24646	24698	41527	41527					0.12919496753693238
KVAKVETSF	9	Unmodified	_KVAKVETSF_					0	0	0			REV__ENSG00000141580|ENST00000392325|WDR45B	REV__ENSG00000141580|ENST00000392325|WDR45B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.8150329589844	2	504.78985	1007.56515	-0.30289	-0.00015289	0.031755	1.603E-05	-0.27113	-0.00013686	504.7898318992521	75.2	2.1196	74.938	74.611	76.731	-0.26176					90	51	2	0	0	0	0.024381	1	8871	8871		21.96	0	1	621790	+		35973	24110	24647	24699	41528	41528					0.061666271030503594
KVALDYELT	9	Unmodified	_KVALDYELT_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.85546875	2	526.28714	1050.55973	0.15803	8.317E-05	-2.1883	-0.0011517	-2.0303	-0.0010685	526.2853967835865	76.97	0.424	76.702	76.424	76.848	-0.26806					15	9	2	0	0	0	0.024477	1	9141	9141		20.947	0	1	114570	+		35974	22813	24648	24700	41529	41529					0.03646903520575506
KVALTLDLD	9	Unmodified	_KVALTLDLD_					0	0	0		nc|ENSG00000174669|Q14542-3|SLC29A2;ENSG00000174669|ENST00000357440|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	nc|ENSG00000174669|Q14542-3|SLC29A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7667236328125	2	494.289682	986.564812	0.41527	0.00020526	0.59606	0.00029463	1.0113	0.00049989	494.28973018760814	40.867	0.56627	40.867	40.587	41.153	0					31	15	3	0	0	0	0.024292	1	3598	3598		40.778	0	1	410150			35975	8489	24649	24701	41530	41530					0.07099207383191697
KVANLKHK	8	Unmodified	_KVANLKHK_					0	0	0		ENST00000536573.6_1_12:1213918-1353789:+|nuORF;nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.75054931640625	2	469.300719	936.586885	-0.27191	-0.00012761	-0.25765	-0.00012091	-0.52956	-0.00024852	469.3006477869756	30.258	0.33201	30.267	30.082	30.414	0.0086708					10	7	2	0	0	0	0.027866	1	1929	1929		23.042	6.5693	1	50803			35976	1741	24650	24702	41531	41531					0.11605476642262147
KVANLKHK	8	Unmodified	_KVANLKHK_					0	0	0		ENST00000536573.6_1_12:1213918-1353789:+|nuORF;nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	ENST00000536573.6_1_12:1213918-1353789:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	469.300719	936.586885	-0.9919	-0.0004655	0.35267	0.00016551	-0.63923	-0.00029999	469.3008741601554	30.258	0.24777	30.258	30.137	30.384	0	-0.0046765	0.00021752	NaN	23.042	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49217			35977	1741	24650	24702							0.11605476642262147
KVANSLPELT	10	Unmodified	_KVANSLPELT_					0	0	0			REV__nc|ENSG00000187172|Q86Y30|BAGE2	REV__nc|ENSG00000187172|Q86Y30|BAGE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8322143554688	2	536.305864	1070.59717	-0.41001	-0.00021989	1.0475	0.00056178	0.6375	0.00034189	536.3064431936339	78.398	0.8609	78.144	77.869	78.729	-0.25471					29	19	2	0	0	0	0.03519	1	9358	9358		44.377	7.9304	1	215010	+		35978	37031	24651	24703	41532	41532					0.06469994786175448
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.271240234375	2	426.271096	850.527639	-0.24959	-0.00010639	0.59914	0.0002554	0.34955	0.000149	426.27133951468716	39.316	1.379	39.316	38.935	40.314	0					111	38	5	0	0	0	0.15889	5	3373	3350;3361;3373;3386;3406		97.473	47.448	1	23953000			35979	6017	24652	24704	41533;41534;41535;41536;41537	41535					0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2711181640625	2	426.271096	850.527639	-0.90904	-0.0003875	1.4862	0.00063354	0.5772	0.00024604	426.2717153814545	39.385	1.7649	39.286	38.807	40.572	-0.098751					137	48	5	0	0	0	0.15889	6	3367	3345;3355;3367;3380;3393;3413		97.473	47.448	1	23303000			35980	6017	24652	24704	41538;41539;41540;41541;41542;41543	41540					0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.27117919921875	2	426.271096	850.527639	-0.53551	-0.00022827	0.78252	0.00033356	0.247	0.00010529	426.27141222946506	39.521	1.4588	39.544	39.17	40.629	0.023727					124	40	5	0	0	0	0.15889	5	3340	3328;3340;3352;3365;3378		97.473	48.2	1	22510000			35981	6017	24652	24704	41544;41545;41546;41547;41548	41545					0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	426.271096	850.527639	-0.23334	-9.9466E-05	1.02	0.00043481	0.7867	0.00033535	426.2713930011792	39.372	0.8345	39.207	38.934	39.768	-0.16458	-0.11796	9.293E-05	NaN	97.473	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2211800			35982	6017	24652	24704							0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	426.271096	850.527639	-0.19516	-8.319E-05	1.0984	0.0004682	0.90321	0.00038501	426.27142389126516	39.556	0.81831	39.333	39.035	39.854	-0.22311	0.0082148	0.00015971	NaN	97.473	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1784100			35983	6017	24652	24704							0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000424041.1_1_20:36073469-36073910:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	426.271096	850.527639	0.31045	0.00013234	0.32933	0.00014038	0.63979	0.00027272	426.27109955669204	39.488	0.83367	39.262	39.022	39.856	-0.2257	-0.062469	-0.00049592	NaN	97.473	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1884400			35984	6017	24652	24704							0.09639580628083877
KVAQVEMS	8	Oxidation (M)	_KVAQVEM(Oxidation (M))S_		KVAQVEM(1)S		KVAQVEM(74)S	0	0	1			REV__ENSG00000165972|ENST00000344280|CCDC38	REV__ENSG00000165972|ENST00000344280|CCDC38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.30218505859375	2	454.23131	906.448068	-1.5449	-0.00070175	1.5223	0.00069147	-0.022638	-1.0283E-05	454.2320168416753	60.464	0.48306	60.543	60.356	60.839	0.078888					22	12	2	0	0	0	0.027866	1	6861	6861		73.975	36.816	1	189380	+		35985	25952	24653	24705	41549	41549		768			-0.008898541081975964
KVARGKVK	8	Unmodified	_KVARGKVK_					0	0	0			REV__ENSG00000078269|ENST00000355585|SYNJ2;REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__ENSG00000078269|ENST00000355585|SYNJ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2737731933594	2	443.303262	884.59197	0.098832	4.3812E-05	4.0448	0.0017931	4.1436	0.0018369	443.30648277846615	50.412	0.16592	50.493	50.41	50.576	0.08099					6	4	2	0	0	0	0.027866	1	5207	5207		8.2313	0	1	65656	+		35986	20608;36477	24654	24706	41550	41550					0.14505780504896393
KVARLDKVE	9	Unmodified	_KVARLDKVE_					0	0	0			REV__PAPOLA|p.E150K|1|0.2|ENSG00000090060|chr14:96527959-96527959|G/A|missense_variant	REV__PAPOLA|p.E150K|1|0.2|ENSG00000090060|chr14:96527959-96527959|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.278076171875	2	529.321848	1056.62914	-0.29902	-0.00015828	2.6618	0.0014089	2.3628	0.0012507	529.3236398047923	69.857	0.33333	69.606	69.399	69.732	-0.25063					13	7	2	0	0	0	0.024477	1	8107	8107		35.618	11.416	1	429020	+		35987	37343	24655	24707	41551	41551					0.10309407259978798
KVARVEQTE	9	Unmodified	_KVARVEQTE_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;MSH6|p.E528*|1|0.12|ENSG00000116062|chr2:47799562-47799575|CTGGAAGGTGATCC/-|frameshift_variant	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2779541015625	2	530.293288	1058.57202	-0.61284	-0.00032498	1.9082	0.0010119	1.2954	0.00068693	530.2946651565053	69.867	0.25268	69.599	69.493	69.746	-0.26725					7	5	2	0	0	0	0.024405	1	8099	8099		27.882	2.3082	1	44114			35988	3516	24656	24708	41552	41552					0.045079399836367884
KVARVKAPN	9	Unmodified	_KVARVKAPN_					0	0	0		ENSG00000175467|ENST00000312397|SART1;ENST00000533386.1_1_11:65744508-65745532:+|nuORF	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.81304931640625	2	491.811451	981.608348	0.081424	4.0045E-05	3.1864	0.0015671	3.2678	0.0016071	491.8125575242196	102.02	2.0218	102.01	100.81	102.83	-0.0054474					63	46	2	0	0	0	0.90698	1	12994	12994		31.955	1.4512	1	346510			35989	8561	24657	24709	41553	41553					0.11680861670981812
KVASFARAP	9	Unmodified	_KVASFARAP_					0	0	0			REV__ENSG00000167098|ENST00000356173|SUN5	REV__ENSG00000167098|ENST00000356173|SUN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7729187011719	2	473.777077	945.5396	0.38238	0.00018116	-3.8324	-0.0018157	-3.45	-0.0016345	473.7780080070681	23.205	1.9601	23.205	21.819	23.78	0					143	43	6	0	0	0	0.85329	1	914	914		35.618	2.8059	1	9113200	+		35990	26102	24658	24710	41554	41554					0.06465197371267095
KVASVARVP	9	Unmodified	_KVASVARVP_					0	0	0			REV__AP3S2|p.A159V|1|0.25|ENSG00000157823|chr15:89835621-89835621|G/A|missense_variant	REV__AP3S2|p.A159V|1|0.25|ENSG00000157823|chr15:89835621-89835621|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7762451171875	2	463.792727	925.5709	0.015296	7.0942E-06	-0.2618	-0.00012142	-0.2465	-0.00011433	463.7925359446858	49.708	0.19191	49.428	49.28	49.472	-0.27977					6	4	2	0	0	0	0.024447	1	4981	4981		40.778	7.2626	1	105230	+		35991	19150	24659	24711	41555	41555					0.1051377040537318
KVAVCDIPPR	10	Unmodified	_KVAVCDIPPR_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3350219726562	2	549.310426	1096.6063	-1.1257	-0.00061837	-2.4676	-0.0013555	-3.5933	-0.0019738	549.3090131643005	43.423	0.36116	43.423	43.224	43.585	0					16	9	2	0	0	0	0.03519	1	4088	4088		21.686	0	1	227370		+	35992	10932;8603	24660	24712	41556	41556					0.06186064870848895
KVCIAKWN	8	Unmodified	_KVCIAKWN_					0	0	0		ENST00000466379.1_1_1:10205010-10205136:+|nuORF	ENST00000466379.1_1_1:10205010-10205136:+|nuORF	ENST00000466379.1_1_1:10205010-10205136:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2922668457031	2	481.26803	960.521507	0.057469	2.7658E-05	-0.11234	-5.4064E-05	-0.054867	-2.6406E-05	481.2679622270542	56.285	0.50198	56.069	55.772	56.274	-0.21607					18	12	2	0	0	0	0.027866	1	6099	6099		40.573	7.057	1	192600			35993	14810	24661	24713	41557	41557					0.03966739124916785
KVCKGAPL	8	Carbamidomethyl (C)	_KVC(Carbamidomethyl (C))KGAPL_	KVC(1)KGAPL		KVC(80)KGAPL		0	1	0			REV__ENST00000338447.10_1_11:63706445-63713674:+|nuORF	REV__ENST00000338447.10_1_11:63706445-63713674:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.7553405761719	2	436.754756	871.494958	0.24742	0.00010806	-0.10417	-4.5497E-05	0.14325	6.2566E-05	436.7545795399024	22.867	0.74244	22.678	22.466	23.208	-0.18942					44	15	4	0	0	0	0.56067	1	851	851		79.939	18.967	1	752680	+		35994	30584	24662	24714	41558	41558	399				0.054070502335889614
KVCLESAVEL	10	Unmodified	_KVCLESAVEL_					0	0	0		nc|ENSG00000185515|P46736-4|BRCC3;ENST00000453705.1_3_X:154299864-154348422:+|nuORF;ENSG00000185515|ENST00000330045|BRCC3;nc|ENSG00000185515|P46736-3|BRCC3;nc|ENSG00000185515|P46736|BRCC3	nc|ENSG00000185515|P46736-4|BRCC3	nc|ENSG00000185515|P46736-4|BRCC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7775268554688	2	545.794275	1089.574	-1.0572	-0.00057703	-2.8963	-0.0015808	-3.9535	-0.0021578	545.7926496540535	76.816	0.28854	76.588	76.402	76.691	-0.22843					11	6	2	0	0	0	0.03519	1	9451	9451		27.882	0	1	133260			35995	9447	24663	24715	41559	41559					0.03279232677186883
KVCRPQPSL	9	Unmodified	_KVCRPQPSL_					0	0	0			REV__TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	REV__TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.28857421875	2	514.289494	1026.56443	-0.18015	-9.265E-05	0.96553	0.00049656	0.78537	0.00040391	514.2900893595689	40.149	0.30486	39.924	39.773	40.078	-0.225					10	7	2	0	0	0	0.024021	1	3438	3438		40.778	22.516	1	164010	+		35996	37720	24664	24716	41560	41560					0.05221509182342743
KVCSVHSLALI	11	Carbamidomethyl (C)	_KVC(Carbamidomethyl (C))SVHSLALI_	KVC(1)SVHSLALI		KVC(52)SVHSLALI		0	1	0		ENST00000591360.1_1_18:56203896-56204202:+|nuORF	ENST00000591360.1_1_18:56203896-56204202:+|nuORF	ENST00000591360.1_1_18:56203896-56204202:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.5702209472656	3	409.569036	1225.68528	0.47709	0.0001954	2.4733	0.001013	2.9504	0.0012084	409.5700698054109	32.399	1.1047	32.399	32.07	33.174	0					81	28	5	0	0	0	0.90172	1	2262	2262		51.528	9.1897	1	5839100			35997	17354	24665	24717	41561	41561	229				0.08146292105152497
KVDDMLSKV	9	Unmodified	_KVDDMLSKV_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12;ENST00000578070.5_1_17:29036821-29093521:+|nuORF;ENST00000579526.5_1_17:29062080-29093580:+|nuORF	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2869262695312	2	517.781167	1033.54778	-1.228	-0.00063585	0.023503	1.2169E-05	-1.2045	-0.00062368	517.7813418065632	49.613	0.60688	49.687	49.503	50.11	0.074196					30	16	2	0	0	0	0.024263	1	5054	5054		51.335	8.9393	1	1390000			35998	8830	24666	24718	41562	41562					0.03234963505747146
KVDFVHKRV	9	Unmodified	_KVDFVHKRV_					0	0	0		ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8458251953125	2	564.337833	1126.66111	0.3864	0.00021806	-3.7548	-0.002119	-3.3684	-0.0019009	564.3354541523031	18.738	0.39612	18.535	18.262	18.658	-0.20371					14	7	3	0	0	0	0.024541	1	300	300		23.042	0	1	51199			35999	1898	24667	24719	41563	41563					0.10284819733783479
KVDKVNMRT	9	Unmodified	_KVDKVNMRT_					0	0	0			REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8341674804688	2	545.805508	1089.59646	-0.75904	-0.00041429	-1.9023	-0.0010383	-2.6614	-0.0014526	545.8043003431943	49.153	0.53782	49.052	48.726	49.264	-0.1008					28	13	3	0	0	0	0.024447	1	4886	4886		32.812	4.9302	1	768260	+		36000	23877	24668	24720	41564	41564					0.055248768654792
KVDKVNMRT	9	Unmodified	_KVDKVNMRT_					0	0	0			REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	545.805508	1089.59646	-0.49176	-0.00026841	2.7095	0.0014789	2.2178	0.0012105	545.8068047377925	49.054	0.59999	49.054	48.724	49.324	0	0.0085879	0.0039529	NaN	45.972	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130880	+		36001	23877	24668	24720							0.055248768654792
KVDKVNMRT	9	Unmodified	_KVDKVNMRT_					0	0	0			REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	545.805508	1089.59646	-1.7349	-0.00094691	4.2835	0.002338	2.5487	0.0013911	545.8076628069576	48.798	0.54174	48.865	48.693	49.235	0.066799	-0.17983	0.0056711	NaN	45.972	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147470	+		36002	23877	24668	24720							0.055248768654792
KVDKVNMRT	9	Unmodified	_KVDKVNMRT_					0	0	0			REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	REV__NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.805508	1089.59646	-0.19347	-0.0001056	-2.626	-0.0014333	-2.8195	-0.0015389	545.8039864975474	49.434	0.46288	49.155	48.934	49.397	-0.27977	0.10957	-0.0018715	NaN	45.972	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	767170	+		36003	23877	24668	24720							0.055248768654792
KVDLLVNEL	9	Unmodified	_KVDLLVNEL_					0	0	0			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;REV__ENST00000549137.1_1_12:50039600-50046016:-|nuORF	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8126220703125	2	521.810782	1041.60701	-0.36354	-0.0001897	4.4443	0.0023191	4.0808	0.0021294	521.8130669238732	42.143	1.7596	42.011	41.678	43.437	-0.1322					142	49	4	0	0	0	0.93097	1	3778	3778		30.318	2.4355	1	7330800	+		36004	25151;25398	24669	24721	41565	41565					0.0878718279154782
KVDLLVNEL	9	Unmodified	_KVDLLVNEL_					0	0	0			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;REV__ENST00000549137.1_1_12:50039600-50046016:-|nuORF	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.81298828125	2	521.810782	1041.60701	-0.21676	-0.00011311	4.2662	0.0022262	4.0494	0.002113	521.8130103174198	42.098	1.6966	42.124	41.821	43.517	0.026016					122	47	3	0	0	0	0.51687	1	3739	3739		58.23	10.573	1	8235700	+		36005	25151;25398	24669	24721	41566	41566					0.0878718279154782
KVDRLKLA	8	Unmodified	_KVDRLKLA_					0	0	0		ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5;ENST00000547915.1_1_12:112327863-112331371:+|nuORF	ENSG00000089022|ENST00000550735|MAPKAPK5	ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.8076477050781	2	471.808377	941.6022	0.53557	0.00025269	-0.75588	-0.00035663	-0.22031	-0.00010395	471.8078858995911	19.419	0.89003	19.258	18.639	19.529	-0.16079					30	17	3	0	0	0	1.0239	1	431	431		33.516	1.5607	1	272740			36006	1889	24670	24722	41567	41567					0.12906343439465218
KVDVEPTQV	9	Unmodified	_KVDVEPTQV_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.81866455078125	2	507.776939	1013.53933	-0.64189	-0.00032594	0.30412	0.00015443	-0.33777	-0.00017151	507.77701946829023	68.624	1.1028	68.362	67.814	68.917	-0.26166					37	26	2	0	0	0	0.024367	1	7949	7949		62.107	31.604	1	780550	+		36007	22797	24671	24723	41568	41568					0.03309732860770964
KVDVPLQEPL	10	Unmodified	_KVDVPLQEPL_					0	0	0		ENST00000283646.4_1_2:89049622-89049676:+|nuORF	ENST00000283646.4_1_2:89049622-89049676:+|nuORF	ENST00000283646.4_1_2:89049622-89049676:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2963256835938	2	569.329339	1136.64412	-0.44825	-0.0002552	0.31199	0.00017762	-0.13627	-7.758E-05	569.329335451322	61.446	0.70042	61.189	60.927	61.628	-0.25725					33	16	3	0	0	0	0.03519	1	6857	6857		30.318	0	1	587020			36008	11740	24672	24724	41569	41569					0.08126854337319855
KVDYKADEW	9	Unmodified	_KVDYKADEW_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2796020507812	2	577.279846	1152.54514	-0.43788	-0.00025278	0.46805	0.0002702	0.030172	1.7418E-05	577.2799005091941	40.028	0.70301	39.879	39.591	40.294	-0.1497					49	17	4	0	0	0	0.065	1	3452	3452		123.21	54.421	1	2735600			36009	2185;4670	24673	24725	41570	41570					-0.02503168627595187
KVDYKADEW	9	Unmodified	_KVDYKADEW_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.279541015625	2	577.279846	1152.54514	-0.57322	-0.00033091	0.5415	0.0003126	-0.031718	-1.831E-05	577.279938783973	40.209	0.67233	39.984	39.696	40.368	-0.225					44	17	4	0	0	0	0.011521	2	3450	3450;3468		229.33	128.07	1	3056200			36010	2185;4670	24673	24725	41571;41572	41571					-0.02503168627595187
KVDYKADEW	9	Unmodified	_KVDYKADEW_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.279541015625	2	577.279846	1152.54514	-1.1504	-0.00066411	1.242	0.00071699	0.091597	5.2877E-05	577.2803565431302	40.231	1.2697	40.001	39.733	41.003	-0.23021					53	33	3	0	0	0	0.013719	1	3450	3450		168.26	68.883	1	2226900			36011	2185;4670	24673	24725	41573	41573					-0.02503168627595187
KVDYTKNINPN	11	Unmodified	_KVDYTKNINPN_					0	0	0		nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	nc|ENSG00000170390|Q8N568-2|DCLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.7431640625	3	435.898098	1304.67246	0.66532	0.00029001	3.2187	0.001403	3.8841	0.0016931	436.23443477208974	32.863	0.44972	32.925	32.766	33.216	0.062885					22	11	3	0	0	0	0.024759	1	2310	2310		23.378	2.431	1	337160			36012	8034	24674	24726	41574	41574					0.03231552246620595
KVEAEVSLP	9	Unmodified	_KVEAEVSLP_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.30902099609375	2	486.274032	970.533512	-0.1831	-8.9038E-05	-2.5795	-0.0012543	-2.7626	-0.0013434	486.2726527459336	21.172	0.9826	21.243	20.516	21.499	0.071487					34	19	2	0	0	0	0.024436	1	508	508		23.042	1.0826	1	145670			36013	9453	24675	24727	41575	41575					0.0470663434908829
KVEDIEDDE	9	Unmodified	_KVEDIEDDE_					0	0	0			REV__ENSG00000196284|ENST00000371459|SUPT3H	REV__ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2753295898438	2	546.240583	1090.46661	-0.76435	-0.00041752	-0.11816	-6.4546E-05	-0.88252	-0.00048207	546.239372883865	73.42	0.30997	73.149	72.967	73.277	-0.27126					11	7	2	0	0	0	0.024466	1	8923	8923		31.53	0	1	76854	+		36014	28158	24676	24728	41576	41576					-0.07500065723320404
KVEDRAIFV	9	Unmodified	_KVEDRAIFV_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2442626953125	2	538.808574	1075.60259	-0.35268	-0.00019002	-2.3254	-0.001253	-2.6781	-0.001443	538.8081190857258	55.834	0.14312	55.618	55.525	55.668	-0.21607					5	3	2	0	0	0	0.024319	1	6018	6018		47.657	1.6851	1	64646			36015	8657	24677	24729	41577	41577					0.06781718368665679
KVEGAWPL	8	Unmodified	_KVEGAWPL_					0	0	0		ENSG00000174136|ENST00000513185|RGMB;ENST00000434027.2_1_5:98106159-98115843:+|nuORF;ENST00000508978.1_1_5:98115639-98134278:+|nuORF	ENSG00000174136|ENST00000513185|RGMB;ENST00000508978.1_1_5:98115639-98134278:+|nuORF	ENSG00000174136|ENST00000513185|RGMB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.231689453125	2	450.252903	898.491253	-0.39386	-0.00017734	-3.5835	-0.0016135	-3.9774	-0.0017908	450.25110886946504	36.029	0.87037	36.067	35.892	36.762	0.038044					33	24	2	0	0	0	0.027866	1	2744	2744		37.028	0	1	206210			36016	8445;15799	24678	24730	41578	41578					0.03794703731375648
KVEGTKIVL	9	Unmodified	_KVEGTKIVL_					0	0	0		nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1	nc|ENSG00000147133|P21675-25|TAF1	nc|ENSG00000147133|P21675-25|TAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79705810546875	2	493.815867	985.617182	-0.40625	-0.00020061	-4.4607	-0.0022028	-4.8669	-0.0024034	493.81379498210714	51.25	0.36458	51.101	50.97	51.335	-0.14916					14	9	2	0	0	0	0.022756	1	5395	5395		79.451	13.022	1	134530			36017	5937	24679	24731	41579	41579					0.12379790516808953
KVEGTKIVL	9	Unmodified	_KVEGTKIVL_					0	0	0		nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1	nc|ENSG00000147133|P21675-25|TAF1	nc|ENSG00000147133|P21675-25|TAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7973937988281	2	493.815867	985.617182	-0.97756	-0.00048274	3.9011	0.0019264	2.9236	0.0014437	493.81821949784506	51.051	0.37561	51.138	50.964	51.339	0.087006					13	9	2	0	0	0	0.023417	1	5299	5299		68.787	17.451	1	99454			36018	5937	24679	24731	41580	41580					0.12379790516808953
KVEIDTKSYW	10	Unmodified	_KVEIDTKSYW_					0	0	0		ENSG00000118271|ENST00000237014|TTR	ENSG00000118271|ENST00000237014|TTR	ENSG00000118271|ENST00000237014|TTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.5549011230469	3	423.555561	1267.64485	0.20946	8.872E-05	-2.4303	-0.0010294	-2.2208	-0.00094063	423.5545790680213	24.148	1.2094	23.933	23.599	24.809	-0.2151					61	27	4	0	0	0	0.96069	1	1042	1042		50.034	2.8058	1	4738600			36019	3676	24680	24732	41581	41581					0.021736489863769748
KVEIDTKSYW	10	Unmodified	_KVEIDTKSYW_					0	0	0		ENSG00000118271|ENST00000237014|TTR	ENSG00000118271|ENST00000237014|TTR	ENSG00000118271|ENST00000237014|TTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.55462646484375	3	423.555561	1267.64485	0.019452	8.2392E-06	-2.1899	-0.00092754	-2.1704	-0.0009193	423.5546674618473	24.025	0.98669	23.845	23.519	24.506	-0.17989					54	22	4	0	0	0	0.73195	1	989	989		65.157	6.911	1	4766800			36020	3676	24680	24732	41582	41582					0.021736489863769748
KVEKKPVR	8	Unmodified	_KVEKKPVR_					0	0	0			REV__ENSG00000109180|ENST00000264312|OCIAD1	REV__ENSG00000109180|ENST00000264312|OCIAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2582702636719	2	492.321651	982.62875	-0.12773	-6.2883E-05	-1.5712	-0.00077354	-1.6989	-0.00083643	492.3204890271874	41.665	0.39064	41.688	41.464	41.854	0.023006					16	10	2	0	0	0	0.027866	1	3716	3716		27.882	5.9224	1	174620	+		36021	21786	24681	24733	41583	41583					0.136740323308004
KVEKRSNSDS	10	Unmodified	_KVEKRSNSDS_					0	0	0		LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant;nc|ENSG00000138709|Q659C4-9|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;nc|ENSG00000138709|Q659C4-2|LARP1B;nc|ENSG00000138709|Q659C4-3|LARP1B	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.3448486328125	2	575.296559	1148.57856	0.86044	0.00049501	-2.859	-0.0016448	-1.9986	-0.0011498	575.2951650703691	97.7	0.40185	97.576	97.372	97.774	-0.12368					14	8	2	0	0	0	0.03519	1	12076	12076		16.717	0	1	64995			36022	5271	24682	24734	41584	41584					0.010218331443411444
KVEKSIRDL	9	Unmodified	_KVEKSIRDL_					0	0	0		ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8101806640625	2	544.327131	1086.63971	-1.3735	-0.00074763	1.2489	0.00067982	-0.12457	-6.7805E-05	544.326769017944	45.023	1.1118	44.812	43.944	45.056	-0.21109					48	29	2	0	0	0	0.014979	1	4091	4091		139.97	0	1	591860			36023	9629	24683	24735	41585	41585					0.09985389914413645
KVEKYLEQP	9	Unmodified	_KVEKYLEQP_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.8110961914062	2	567.313689	1132.61282	-0.35953	-0.00020397	3.2571	0.0018478	2.8976	0.0016438	567.3152084968644	56.008	0.65543	55.852	55.554	56.21	-0.15601					32	17	3	0	0	0	0.024367	1	6244	6244		44.377	0	1	809830			36024	10311	24684	24736	41586	41586					0.05182281303223135
KVELAQLQEEW	11	Unmodified	_KVELAQLQEEW_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.26641845703125	3	458.241753	1371.70343	-1.3366	-0.00061247	4.2342	0.0019403	2.8976	0.0013278	458.2444524922453	28.845	0.38336	28.599	28.281	28.665	-0.24524					12	8	2	0	0	0	0.02477	1	1682	1682		17.167	0	1	43001			36025	2263	24685	24737	41587	41587					0.03244705560859984
KVELDVESNS	10	Unmodified	_KVELDVESNS_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2703857421875	2	560.280043	1118.54553	-0.69856	-0.00039139	1.3137	0.00073601	0.61509	0.00034462	560.2805784588203	26.829	0.66653	26.588	26.411	27.077	-0.2413					23	15	2	0	0	0	0.03519	1	1444	1444		65.465	26.213	1	200970	+		36026	28991	24686	24738	41588	41588					-0.008997936983632826
KVELHHIGGGG	11	Unmodified	_KVELHHIGGGG_					0	0	0			REV__ENSG00000166897|ENST00000402918|ELFN2	REV__ENSG00000166897|ENST00000402918|ELFN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8236694335938	2	552.301447	1102.58834	-0.67506	-0.00037284	-0.25677	-0.00014182	-0.93183	-0.00051465	552.801900548613	75.42	0.37709	75.175	74.997	75.374	-0.24455					19	9	4	0	0	0	0.024738	1	9238	9238		26.693	0	1	174320	+		36027	26076	24687	24739	41589	41589					0.04115065940391105
KVELIDQPD	9	Unmodified	_KVELIDQPD_					0	0	0			REV__nc|ENSG00000065328|Q7L590|MCM10	REV__nc|ENSG00000065328|Q7L590|MCM10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297607421875	2	528.782222	1055.54989	-0.18802	-9.9421E-05	-3.7707	-0.0019939	-3.9587	-0.0020933	528.7804772440838	52.292	0.54453	52.145	51.985	52.53	-0.14735					26	13	3	0	0	0	0.022832	1	5563	5563		71.877	3.0906	1	191580	+		36028	20307	24688	24740	41590	41590					0.024337155151897605
KVELIDQPD	9	Unmodified	_KVELIDQPD_					0	0	0			REV__nc|ENSG00000065328|Q7L590|MCM10	REV__nc|ENSG00000065328|Q7L590|MCM10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.782222	1055.54989	-0.84291	-0.00044572	-9.4953	-0.0050209	-10.338	-0.0054667	529.7795762308331	52.281	0.65081	52.162	51.869	52.52	-0.11875	-0.01598	-0.0014918	NaN	71.877	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160550	+		36029	20307	24688	24740							0.024337155151897605
KVELIEDKI	9	Unmodified	_KVELIEDKI_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7957763671875	2	543.823889	1085.63323	-0.89988	-0.00048938	-3.1631	-0.0017202	-4.063	-0.0022095	543.8219700675259	54.764	0.38961	54.862	54.66	55.05	0.098015					19	10	3	0	0	0	0.023093	1	5959	5959		72.879	0	1	360490			36030	10426	24689	24741	41591	41591					0.09383451963026346
KVELLRYE	8	Unmodified	_KVELLRYE_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.8067016601562	2	525.303124	1048.5917	-0.83706	-0.00043971	-0.088494	-4.6486E-05	-0.92555	-0.0004862	525.3029653496619	47.248	0.95154	47.248	46.733	47.685	0					64	26	4	0	0	0	0.027866	1	4648	4648		49.442	15.926	1	2135100			36031	2209	24690	24742	41592	41592					0.06934315994362805
KVELLRYE	8	Unmodified	_KVELLRYE_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.806396484375	2	525.303124	1048.5917	-0.56138	-0.0002949	-0.48756	-0.00025612	-1.0489	-0.00055101	525.3028242614859	47.197	0.96213	47.256	46.623	47.585	0.059093					59	26	4	0	0	0	0.027866	1	4584	4584		82.305	10.927	1	1963500			36032	2209	24690	24742	41593	41593					0.06934315994362805
KVELVKNKV	9	Unmodified	_KVELVKNKV_					0	0	0			REV__ENSG00000185101|ENST00000332826|ANO9	REV__ENSG00000185101|ENST00000332826|ANO9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2568359375	2	528.842416	1055.67028	-1.0636	-0.00056247	-0.052837	-2.7943E-05	-1.1164	-0.00059042	528.8426585474764	44.78	0.27629	44.528	44.354	44.63	-0.25252					11	6	2	0	0	0	0.024541	1	4204	4204		16.473	0.83134	1	91023	+		36033	27734	24691	24743	41594	41594					0.14467168299461264
KVELYAEKV	9	Unmodified	_KVELYAEKV_					0	0	0		ENST00000407121.1_1_6:100023791-100023977:+|nuORF	ENST00000407121.1_1_6:100023791-100023977:+|nuORF	ENST00000407121.1_1_6:100023791-100023977:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.331787109375	2	539.810782	1077.60701	-0.41598	-0.00022455	2.1899	0.0011821	1.7739	0.0009576	539.8108642650701	67.694	0.54238	67.718	67.43	67.972	0.023903					22	13	2	0	0	0	0.0245	1	7971	7971		29.17	0	1	173560			36034	13742	24692	24744	41595	41595					0.0713118279156788
KVEMLGAIAV	10	Unmodified	_KVEMLGAIAV_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2764892578125	2	515.801903	1029.58925	-0.10942	-5.6438E-05	-3.3744	-0.0017405	-3.4838	-0.001797	515.8000920174708	88.95	0.63702	88.966	88.537	89.174	0.015907					20	14	2	0	0	0	0.03519	1	11143	11143		19.997	0	1	145200	+		36035	33109	24693	24745	41596	41596					0.07564144265074901
KVENFIQK	8	Unmodified	_KVENFIQK_					0	0	0		ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000180957|ENST00000335272|PITPNB	ENSG00000180957|ENST00000335272|PITPNB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.75592041015625	2	503.290017	1004.56548	-0.27655	-0.00013919	-1.1932	-0.00060051	-1.4697	-0.0007397	503.2892427435714	47.741	0.92333	47.465	47.157	48.08	-0.27598					41	24	2	0	0	0	0.027866	1	4630	4630		39.253	5.0803	1	623910			36036	9012	24694	24746	41597	41597					0.06338046822907017
KVEQLKTK	8	Unmodified	_KVEQLKTK_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.25	2	487.305667	972.596781	-0.5893	-0.00028717	-0.53277	-0.00025962	-1.1221	-0.00054679	487.30508025616996	25.966	0.58889	25.943	25.735	26.324	-0.023087					23	13	3	0	0	0	0.027866	1	1263	1263		35.618	0	1	200820	+		36037	28831	24695	24747	41598	41598					0.10938619857006415
KVERIHLKR	9	Unmodified	_KVERIHLKR_					0	0	0			REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF	REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.3426513671875	2	589.877656	1177.74076	0.75043	0.00044266	-4.2274	-0.0024937	-3.477	-0.002051	589.8764865843974	92.414	0.2028	92.424	92.343	92.546	0.0094147					5	4	2	0	0	0	0.024541	1	11639	11639		10.866	0	1	30312	+		36038	34550	24696	24748	41599	41599					0.15899886407783015
KVERRSEL	8	Unmodified	_KVERRSEL_					0	0	0			REV__ENST00000396696.1_1_8:61504408-61533325:+|nuORF	REV__ENST00000396696.1_1_8:61504408-61533325:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.77691650390625	2	508.795998	1015.57744	0.97577	0.00049647	2.3417	0.0011914	3.3174	0.0016879	508.7968605453029	82.311	0.75761	82.201	81.881	82.639	-0.11006					24	17	2	0	0	0	0.027866	1	10294	10294		26.693	4.733	1	301510	+		36039	21444	24697	24749	41600	41600					0.07027663566088904
KVETIGARL	9	Unmodified	_KVETIGARL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7861022949219	2	493.803291	985.59203	0.55135	0.00027226	-1.042	-0.00051456	-0.49069	-0.0002423	493.8026212648798	51.871	0.40295	51.687	51.449	51.852	-0.18404					18	10	2	0	0	0	0.023274	1	5323	5323		77.318	13.11	1	867350	+		36040	28328	24698	24750	41601	41601					0.09865735714231505
KVEVDGPEL	9	Unmodified	_KVEVDGPEL_					0	0	0		nc|nan|Q6P1W5-2|C1orf94;ENSG00000142698|ENST00000488417|C1orf94	nc|nan|Q6P1W5-2|C1orf94	nc|nan|Q6P1W5-2|C1orf94	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.26220703125	2	493.263665	984.512776	0.90884	0.0004483	-0.93341	-0.00046042	-0.024572	-1.2121E-05	493.2632028296755	71.047	1.3707	71.047	70.569	71.94	0					95	34	5	0	0	0	0.12602	1	8580	8580		104.75	5.3716	1	11696000			36041	5585	24699	24751	41602	41602					0.01990043969431099
KVEVDGPEL	9	Unmodified	_KVEVDGPEL_					0	0	0		nc|nan|Q6P1W5-2|C1orf94;ENSG00000142698|ENST00000488417|C1orf94	nc|nan|Q6P1W5-2|C1orf94	nc|nan|Q6P1W5-2|C1orf94	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2618103027344	2	493.263665	984.512776	0.75936	0.00037457	-0.83972	-0.0004142	-0.080356	-3.9637E-05	493.26327053213487	71.418	1.4371	71.13	70.546	71.983	-0.28858					114	36	6	0	0	0	0.067814	3	8585	8585;8595;8617		122.18	8.7644	1	11187000			36042	5585	24699	24751	41603;41604;41605	41603					0.01990043969431099
KVEVDGPEL	9	Unmodified	_KVEVDGPEL_					0	0	0		nc|nan|Q6P1W5-2|C1orf94;ENSG00000142698|ENST00000488417|C1orf94	nc|nan|Q6P1W5-2|C1orf94	nc|nan|Q6P1W5-2|C1orf94	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2603454589844	2	493.263665	984.512776	-0.19328	-9.5338E-05	0.34631	0.00017082	0.15303	7.5483E-05	493.2637914449025	71.458	1.1665	71.182	70.743	71.91	-0.2751					54	27	3	0	0	0	0.31037	1	8328	8328		74.255	5.4682	1	1762400			36043	5585	24699	24751	41606	41606					0.01990043969431099
KVEVDGPEL	9	Unmodified	_KVEVDGPEL_					0	0	0		nc|nan|Q6P1W5-2|C1orf94;ENSG00000142698|ENST00000488417|C1orf94	nc|nan|Q6P1W5-2|C1orf94	nc|nan|Q6P1W5-2|C1orf94	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.26251220703125	2	493.263665	984.512776	0.1335	6.5851E-05	0.12085	5.9612E-05	0.25435	0.00012546	493.2636514537046	71.396	1.3579	71.134	70.646	72.004	-0.26199					73	32	5	0	0	0	0.39228	1	8360	8360		66.429	7.6473	1	2195600			36044	5585	24699	24751	41607	41607					0.01990043969431099
KVEVDGPEL	9	Unmodified	_KVEVDGPEL_					0	0	0		nc|nan|Q6P1W5-2|C1orf94;ENSG00000142698|ENST00000488417|C1orf94	nc|nan|Q6P1W5-2|C1orf94	nc|nan|Q6P1W5-2|C1orf94	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.26287841796875	2	493.263665	984.512776	0.71752	0.00035393	-0.58014	-0.00028616	0.13738	6.7766E-05	493.26329528446615	71.329	1.2418	71.123	70.659	71.901	-0.20614					67	29	4	0	0	0	0.17822	2	8327	8315;8327		93.195	2.8256	1	1639500			36045	5585	24699	24751	41608;41609	41609					0.01990043969431099
KVEVHDPESSL	11	Unmodified	_KVEVHDPESSL_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.8768310546875	3	413.878704	1238.61428	-0.14895	-6.1646E-05	-2.7291	-0.0011295	-2.878	-0.0011912	413.87667537461	29.925	1.5666	29.934	29.098	30.665	0.0086689					92	38	4	0	0	0	0.98082	1	1868	1868		41.08	0	1	3462200	+		36046	20462	24700	24752	41610	41610					0.004518706013413976
KVEVIAASK	9	Unmodified	_KVEVIAASK_					0	0	0		ENST00000413663.1_1_3:43526466-43526670:-|nuORF	ENST00000413663.1_1_3:43526466-43526670:-|nuORF	ENST00000413663.1_1_3:43526466-43526670:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2779541015625	2	472.792392	943.570232	-0.066549	-3.1464E-05	-1.0968	-0.00051856	-1.1634	-0.00055003	472.7917138471981	56.449	0.75321	56.547	55.999	56.752	0.097893					33	20	3	0	0	0	0.024447	1	6157	6157		25.574	0	1	245830			36047	13847	24701	24753	41611	41611					0.09618930965655181
KVEVKTLVE	9	Unmodified	_KVEVKTLVE_					0	0	0		nc|ENSG00000164691|Q8N103-3|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3089599609375	2	522.818607	1043.62266	-1.0905	-0.00057011	3.3553	0.0017542	2.2648	0.0011841	522.820315228579	32.476	0.18757	32.476	32.418	32.606	0					5	4	2	0	0	0	0.024457	1	2258	2258		15.642	0	1	51998			36048	18458	24702	24754	41612	41612					0.10259469308630287
KVEVQYKTL	9	Unmodified	_KVEVQYKTL_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3241577148438	2	554.324057	1106.63356	-0.38494	-0.00021338	0.42699	0.00023669	0.042051	2.331E-05	554.3242041917039	50.771	0.97585	50.622	50.322	51.298	-0.14916					74	27	4	0	0	0	0.10174	1	5315	5315		110.12	0	1	4195000			36049	1034	24703	24755	41613	41613					0.08450871682907746
KVEVQYKTL	9	Unmodified	_KVEVQYKTL_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3240966796875	2	554.324057	1106.63356	-0.066455	-3.6838E-05	0.24298	0.00013469	0.17653	9.7853E-05	554.3240706532682	50.378	0.93584	50.459	50.211	51.147	0.080994					69	26	4	0	0	0	0.12602	1	5210	5210		104.75	0	1	3978000			36050	1034	24703	24755	41614	41614					0.08450871682907746
KVEVQYKTL	9	Unmodified	_KVEVQYKTL_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.3242797851562	2	554.324057	1106.63356	0.069078	3.8292E-05	0.30858	0.00017105	0.37766	0.00020935	554.324017011877	50.548	0.73753	50.437	50.159	50.896	-0.11163					59	19	4	0	0	0	0.067814	3	5144	5144;5156;5168		122.18	0	1	3170500			36051	1034	24703	24755	41615;41616;41617	41615					0.08450871682907746
KVEVQYKTL	9	Unmodified	_KVEVQYKTL_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.32470703125	2	554.324057	1106.63356	0.23481	0.00013016	0.31971	0.00017722	0.55451	0.00030738	554.3239941800263	50.782	0.6665	50.505	50.224	50.891	-0.27643					55	17	4	0	0	0	0.12602	2	5167	5167;5175		104.75	0	1	3769300			36052	1034	24703	24755	41618;41619	41618					0.08450871682907746
KVEVQYKTL	9	Unmodified	_KVEVQYKTL_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3236083984375	2	554.324057	1106.63356	0.15452	8.5652E-05	0.2866	0.00015887	0.44112	0.00024452	554.3240162374209	50.694	0.69891	50.513	50.172	50.87	-0.18071					52	18	4	0	0	0	0.17822	3	5152	5152;5164;5179		93.195	0	1	3460300			36053	1034	24703	24755	41620;41621;41622	41620					0.08450871682907746
KVEYKLPIP	9	Unmodified	_KVEYKLPIP_					0	0	0			REV__ITGA4|p.A767P|1|0.15|ENSG00000115232|chr2:181525251-181525251|G/C|missense_variant	REV__ITGA4|p.A767P|1|0.15|ENSG00000115232|chr2:181525251-181525251|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8207397460938	2	543.831517	1085.64848	-0.3239	-0.00017615	-0.22576	-0.00012277	-0.54966	-0.00029892	544.3328275657651	99.342	0.57886	99.338	98.988	99.567	-0.0038834					15	12	2	0	0	0	0.024263	1	12587	12587		51.335	0	1	30540	+		36054	36156	24704	24756	41623	41623					0.10908363550902322
KVFAGIPTVAS	11	Unmodified	_KVFAGIPTVAS_					0	0	0		PTPRZ1-TSPAN33|2|fusion;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	PTPRZ1-TSPAN33|2|fusion	PTPRZ1-TSPAN33|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3160400390625	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	0.98542	1	10769	10769		40.058	3.6114	1	4888900			36055	19011	24705	24757	41624	41624					0.08222889028479585
KVFAGIPTVAS	11	Unmodified	_KVFAGIPTVAS_					0	0	0		PTPRZ1-TSPAN33|2|fusion;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	PTPRZ1-TSPAN33|2|fusion	PTPRZ1-TSPAN33|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3158569335938	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	0.9728	1	10448	10448		42.864	0.46813	1	5204600			36056	19011	24705	24757	41625	41625					0.08222889028479585
KVFAGIPTVAS	11	Unmodified	_KVFAGIPTVAS_					0	0	0		PTPRZ1-TSPAN33|2|fusion;PTPRZ1|p.P1905Qfs*8|1|0.14|ENSG00000106278|chr7:122040891-122040891|C/-|frameshift_variant;PTPRZ1|p.Q2026Hfs*6|1|0.11|ENSG00000106278|chr7:122044561-122044562|-/TT|frameshift_variant;PTPRZ1|p.C2144Ifs*24|1|0.34|ENSG00000106278|chr7:122054986-122054987|-/AT|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	PTPRZ1-TSPAN33|2|fusion	PTPRZ1-TSPAN33|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.96599	1	11151	11151		44.377	5.6236	1	17068000			36057	19011	24705	24757	41626	41626					0.08222889028479585
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	OPSCC_39_ClassI_Rep-1	1	528.8085327148438	2	528.808042	1055.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.678	1	63.678	63.178	64.178	0								0	0	0	0.17706	1	7461	7461		95.815	26.969	1				36058	4938	24706	24758	41627	41627					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	OPSCC_39_ClassI_Rep-1	1	528.8092041015625	2	528.808042	1055.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.783	1	63.783	63.283	64.283	0								0	0	0	0.22594	1	7479	7479		85.161	28.44	1				36059	4938	24706	24758	41628	41628					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	OPSCC_39_ClassI_Rep-2	2	528.808837890625	2	528.808042	1055.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.995	1	63.743	63.243	64.243	-0.25141								0	0	0	0.18784	1	7479	7479		107.01	48.226	1				36060	4938	24706	24758	41629	41629					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	OPSCC_39_ClassI_Rep-2	2	528.8104248046875	2	528.808042	1055.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.06	1	63.809	63.309	64.309	-0.25141								0	0	0	0.22594	1	7490	7490		85.161	32.224	1				36061	4938	24706	24758	41630	41630					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	OPSCC_39_ClassI_Rep-3	3	528.8082275390625	2	528.808042	1055.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.685	1	63.739	63.239	64.239	0.054104								0	0	0	0.37158	1	7382	7382		72.879	10.772	1				36062	4938	24706	24758	41631	41631					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MSMS	OPSCC_39_ClassI_Rep-3	3	528.8084106445312	2	528.808042	1055.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.754	1	63.803	63.303	64.303	0.048412								0	0	0	0.22594	1	7394	7394		85.161	15.533	1				36063	4938	24706	24758	41632	41632					0.07595503999755238
KVFDPVPVGV	10	Unmodified	_KVFDPVPVGV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.778564453125	2	528.808042	1055.60153	0.044404	2.3481E-05	-0.35609	-0.0001883	-0.31168	-0.00016482	528.8075091497838	64.003	0.65753	63.745	63.531	64.188	-0.25824					22	16	2	0	0	0	0.03519	1	7236	7236		35.618	16.515	1	1079800			36064	4938	24706	24758	41633	41633					0.07595503999755238
KVFFLDLDL	9	Unmodified	_KVFFLDLDL_					0	0	0		nc|ENSG00000157211|Q5VXM1-1|CDCP2;ENSG00000157211|ENST00000530059|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.8037719726562	2	555.3157	1108.61685	0.35137	0.00019512	-3.6144	-0.0020071	-3.2631	-0.001812	555.3136136803062	101.1	1.7649	101.1	100.65	102.41	-0.0054474					54	40	3	0	0	0	0.024495	1	12962	12962		26.693	15.182	1	249420			36065	6583	24707	24759	41634	41634					0.06688370796950949
KVFFLDLDL	9	Unmodified	_KVFFLDLDL_					0	0	0		nc|ENSG00000157211|Q5VXM1-1|CDCP2;ENSG00000157211|ENST00000530059|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.3157	1108.61685	0.10886	6.045E-05	-3.6459	-0.0020246	-3.537	-0.0019642	555.3133666230103	101.02	1.3317	101.02	100.57	101.91	0	-0.010184	-0.00044959	NaN	19.997	46	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216630			36066	6583	24707	24759							0.06688370796950949
KVFFLDLDL	9	Unmodified	_KVFFLDLDL_					0	0	0		nc|ENSG00000157211|Q5VXM1-1|CDCP2;ENSG00000157211|ENST00000530059|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.3157	1108.61685	-0.38723	-0.00021504	-2.5292	-0.0014045	-2.9164	-0.0016195	555.3140659998807	100.97	1.1149	100.98	100.58	101.69	0.0090256	-0.053867	0.00079065	NaN	19.997	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153660			36067	6583	24707	24759							0.06688370796950949
KVFGGFQV	8	Unmodified	_KVFGGFQV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.2477722167969	2	441.247621	880.480688	0.35919	0.00015849	-0.22112	-9.757E-05	0.13807	6.0921E-05	441.2474021101861	58.142	1.385	58.142	57.872	59.257	0					90	37	5	0	0	0	0.24207	3	6578	6578;6591;6605		133.47	39.463	1	12362000			36068	3353	24708	24760	41635;41636;41637	41635					0.03566721076947488
KVFGGFQV	8	Unmodified	_KVFGGFQV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2479553222656	2	441.247621	880.480688	-0.52451	-0.00023144	0.87444	0.00038584	0.34993	0.0001544	441.24782678432473	58.332	1.5571	58.148	57.887	59.444	-0.18357					90	42	4	0	0	0	0.15369	4	6564	6554;6564;6588;6601		148.21	41.791	1	9996100			36069	3353	24708	24760	41638;41639;41640;41641	41639					0.03566721076947488
KVFGGFQV	8	Unmodified	_KVFGGFQV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.2479553222656	2	441.247621	880.480688	-0.13477	-5.9468E-05	0.39646	0.00017494	0.26169	0.00011547	441.24766407816657	57.976	1.4143	58.067	57.797	59.211	0.091217					95	38	4	0	0	0	0.30538	3	6467	6467;6490;6502		110.34	16.331	1	10910000			36070	3353	24708	24760	41642;41643;41644	41642					0.03566721076947488
KVFGGFQVV	9	Unmodified	_KVFGGFQVV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.7815856933594	2	490.781828	979.549102	-0.74128	-0.00036381	-0.078256	-3.8407E-05	-0.81954	-0.00040221	490.78152734267366	62.605	1.1491	62.605	62.335	63.485	0					60	30	4	0	0	0	0.15029	4	7284	7275;7284;7295;7307		99.375	40.593	1	8999800			36071	3353	24709	24761	41645;41646;41647;41648	41646					0.05850965656804874
KVFGGFQVV	9	Unmodified	_KVFGGFQVV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.78057861328125	2	490.781828	979.549102	-1.0205	-0.00050087	0.33315	0.0001635	-0.6874	-0.00033736	490.781625478903	62.796	1.2284	62.557	62.264	63.492	-0.23926					64	33	4	0	0	0	0.20967	3	7279	7279;7289;7302		87.754	29.943	1	8751400			36072	3353	24709	24761	41649;41650;41651	41649					0.05850965656804874
KVFGGFQVV	9	Unmodified	_KVFGGFQVV_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.7810974121094	2	490.781828	979.549102	-0.38502	-0.00018896	-0.48991	-0.00024044	-0.87494	-0.0004294	490.7814072212408	62.578	1.1615	62.641	62.367	63.528	0.062767					56	29	4	0	0	0	0.15029	4	7212	7190;7200;7212;7224		99.375	36.069	1	8220200			36073	3353	24709	24761	41652;41653;41654;41655	41654					0.05850965656804874
KVFHENQLAI	10	Unmodified	_KVFHENQLAI_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2388916015625	3	400.224146	1197.65061	0.75207	0.000301	3.9511	0.0015813	4.7032	0.0018823	400.22539563619597	27.667	0.82984	27.667	27.361	28.191	0					37	21	3	0	0	0	0.03519	1	1502	1502		14.694	0	1	214130			36074	18487	24710	24762	41656	41656					0.0596879228871785
KVFHENQLAI	10	Unmodified	_KVFHENQLAI_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	400.224146	1197.65061	0.15908	6.3667E-05	4.7248	0.001891	4.8839	0.0019546	400.2255634020182	27.696	0.94943	27.683	27.241	28.191	-0.012983	0.042237	0.0011116	NaN	25.126	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152930			36075	18487	24710	24762							0.0596879228871785
KVFHENQLAI	10	Unmodified	_KVFHENQLAI_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	400.224146	1197.65061	2.0567	0.00082313	3.1447	0.0012586	5.2014	0.0020817	400.2249647359276	27.491	0.90873	27.572	27.171	28.08	0.081293	-0.06877	-0.00078558	NaN	25.126	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179210			36076	18487	24710	24762							0.0596879228871785
KVFKHRSYL	9	Unmodified	_KVFKHRSYL_					0	0	0		ENSG00000204524|ENST00000414468|ZNF805;nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000083844|ENST00000263095|ZNF264	ENSG00000204524|ENST00000414468|ZNF805	ENSG00000204524|ENST00000414468|ZNF805	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3433227539062	2	589.345658	1176.67676	-1.3447	-0.00079247	-3.4945	-0.0020595	-4.8392	-0.0028519	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	0.84115	1	11745	11745		36.447	7.2767	1	13724000			36077	10351	24711	24763	41657	41657					0.09549106250847217
KVFKNPKFSI	10	Unmodified	_KVFKNPKFSI_					0	0	0		ENSG00000168928|ENST00000303037|CTRB2;ENSG00000168925|ENST00000361017|CTRB1	ENSG00000168928|ENST00000303037|CTRB2	ENSG00000168928|ENST00000303037|CTRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.24786376953125	3	403.24477	1206.71248	0.89612	0.00036136	4.3496	0.001754	5.2457	0.0021153	403.2465158777741	103.32	1.28	103.32	102.88	104.16	0					75	30	5	0	0	0	1.126	1	13280	13280		24.232	1.6702	1	2354300			36078	7884	24712	24764	41658	41658					0.11739143707836774
KVFKRCPVT	9	Unmodified	_KVFKRCPVT_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.800537109375	2	539.315512	1076.61647	0.16781	9.0502E-05	-2.1606	-0.0011653	-1.9928	-0.0010748	539.3136773851934	101.19	0.45193	101.06	100.77	101.22	-0.13156					13	9	2	0	0	0	0.024541	1	12542	12542		10.265	0	1	32257	+		36079	27574	24713	24765	41659	41659					0.08122672596095981
KVFKRCPVT	9	Unmodified	_KVFKRCPVT_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.315512	1076.61647	-0.53534	-0.00028872	-2.1416	-0.001155	-2.6769	-0.0014437	539.3138431474642	101.21	0.64842	101.21	100.95	101.6	0	0.050095	-0.00036257	NaN	15.642	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59962	+		36080	27574	24713	24765							0.08122672596095981
KVFKRCPVT	9	Unmodified	_KVFKRCPVT_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.315512	1076.61647	-0.64711	-0.00034899	-1.5864	-0.00085558	-2.2335	-0.0012046	539.314396661284	101.18	0.42608	101.19	101	101.43	0.0090332	0.028482	0.00023625	NaN	15.642	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71757	+		36081	27574	24713	24765							0.08122672596095981
KVFKRCPVT	9	Unmodified	_KVFKRCPVT_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.315512	1076.61647	-0.4147	-0.00022365	-1.6285	-0.00087826	-2.0432	-0.0011019	539.3141891790663	101.19	0.33823	101.19	101.11	101.44	-0.0054474	0.026708	0.00019089	NaN	15.642	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40306	+		36082	27574	24713	24765							0.08122672596095981
KVFKSFRGLI	10	Unmodified	_KVFKSFRGLI_					0	0	0		nc|ENSG00000180354|Q8N3F0-2|MTURN	nc|ENSG00000180354|Q8N3F0-2|MTURN	nc|ENSG00000180354|Q8N3F0-2|MTURN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	597.8564453125	2	597.871508	1193.72846	-1.0441	-0.00062423	3.5844	0.002143	2.5403	0.0015188	597.8731695367503	92.521	0.29504	92.512	92.434	92.729	-0.0082932					11	6	2	0	0	0	0.03519	1	11703	11703		39.253	0	1	53440			36083	18559	24714	24766	41660	41660					0.13934849944757843
KVFMLKAKQ	9	Unmodified	_KVFMLKAKQ_					0	0	0			REV__nc|nan|A0A1B0GVB3-2|C7orf78	REV__nc|nan|A0A1B0GVB3-2|C7orf78	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8110961914062	2	546.833537	1091.65252	-1.2187	-0.00066645	-1.3616	-0.00074459	-2.5804	-0.001411	546.8331624132911	46.674	0.47447	46.521	46.342	46.817	-0.15301					21	10	3	0	0	0	0.024523	1	4615	4615		37.159	0	1	371020	+		36084	28875	24715	24767	41661	41661					0.11036129772946879
KVFPALVA	8	Unmodified	_KVFPALVA_					0	0	0		ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.84686279296875	2	422.768189	843.521825	-0.52665	-0.00022265	-4.1969	-0.0017743	-4.7235	-0.001997	422.7663217537352	33.273	0.60171	33.108	32.8	33.401	-0.16565					38	14	3	0	0	0	0.027866	1	2313	2313		19.36	1.995	1	522480			36085	7749	24716	24768	41662	41662					0.09380482116409894
KVFPQSSSW	9	Unmodified	_KVFPQSSSW_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2706909179688	2	533.271824	1064.5291	-0.035097	-1.8716E-05	-1.0971	-0.00058503	-1.1321	-0.00060374	533.2725841493018	49.788	1.5815	49.682	49.025	50.606	-0.10558					132	41	6	0	0	0	0.056725	6	5066	5006;5017;5029;5041;5052;5066		126.24	48.925	1	4436200			36086	6186	24717	24769	41663;41664;41665;41666;41667;41668	41668					-0.0005883007381726202
KVFPQSSSW	9	Unmodified	_KVFPQSSSW_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2715454101562	2	533.271824	1064.5291	-0.38167	-0.00020353	1.5155	0.00080815	1.1338	0.00060462	533.2729389103854	50.103	1.6135	49.823	49.161	50.775	-0.27977					108	42	4	0	0	0	0.071379	6	5087	5040;5052;5064;5075;5087;5101		120.87	53.877	1	5892900			36087	6186	24717	24769	41669;41670;41671;41672;41673;41674	41673					-0.0005883007381726202
KVFPQSSSW	9	Unmodified	_KVFPQSSSW_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2716064453125	2	533.271824	1064.5291	0.090517	4.827E-05	0.87392	0.00046604	0.96444	0.00051431	533.2725459978514	49.935	1.6075	49.754	49.04	50.647	-0.18071					105	42	5	0	0	0	0.071379	6	5069	5021;5032;5044;5057;5069;5082		120.87	60.75	1	5921000			36088	6186	24717	24769	41675;41676;41677;41678;41679;41680	41679					-0.0005883007381726202
KVFPVATE	8	Unmodified	_KVFPVATE_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.22821044921875	2	445.752736	889.490919	-0.68722	-0.00030633	-3.5097	-0.0015644	-4.1969	-0.0018708	445.75090720872475	26.177	0.85809	25.941	25.72	26.578	-0.23603					37	23	3	0	0	0	0.027866	1	1392	1392		24.203	3.2558	1	628170			36089	18475	24718	24770	41681	41681					0.041752840115123036
KVFPVATE	8	Unmodified	_KVFPVATE_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	445.752736	889.490919	0.23666	0.00010549	-5.0197	-0.0022376	-4.7831	-0.0021321	445.7503974818588	25.68	0.38475	25.76	25.581	25.966	0.08009	-0.066461	-0.0010277	NaN	24.203	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86268			36090	18475	24718	24770							0.041752840115123036
KVFQTGPANN	10	Unmodified	_KVFQTGPANN_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.322998046875	2	538.28018	1074.54581	-1.3011	-0.00070033	-0.39636	-0.00021335	-1.6974	-0.00091369	538.279745601022	81.407	0.16443	81.431	81.37	81.534	0.023911					6	3	2	0	0	0	0.03519	1	10075	10075		42.864	5.7052	1	33699	+		36091	36731	24719	24771	41682	41682					0.011516708121462216
KVFQTGPANN	10	Unmodified	_KVFQTGPANN_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.28018	1074.54581	-0.01468	-7.902E-06	-3.1444	-0.0016926	-3.1591	-0.0017005	538.2793305594874	81.543	0.20647	81.314	81.147	81.353	-0.2289	-0.058162	-0.0014434	NaN	42.864	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22689	+		36092	36731	24719	24771							0.011516708121462216
KVFRSRDY	8	Unmodified	_KVFRSRDY_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.773193359375	2	535.790715	1069.56688	-0.38723	-0.00020747	1.7576	0.00094171	1.3704	0.00073424	536.2944180926833	41.513	0.29636	41.378	41.294	41.591	-0.13553					11	7	2	0	0	0	0.027866	1	3673	3673		57.811	2.3071	1	248180			36093	2916	24720	24772	41683	41683					0.0348768091164402
KVFSQNSNL	9	Unmodified	_KVFSQNSNL_					0	0	0		ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.324462890625	2	518.774731	1035.53491	0.33219	0.00017233	0.22946	0.00011904	0.56165	0.00029137	518.7747593722927	41.079	0.88575	40.955	40.689	41.574	-0.12317					35	24	2	0	0	0	0.024209	1	3657	3657		47.657	5.2612	1	971350			36094	10160	24721	24773	41684	41684					0.018562684378366612
KVFTGNFIQPL	11	Unmodified	_KVFTGNFIQPL_					0	0	0			REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5133972167969	3	421.908046	1262.70231	-0.28677	-0.00012099	-2.4027	-0.0010137	-2.6894	-0.0011347	421.90678658855734	31.579	0.5635	31.591	31.299	31.863	0.011797					25	13	3	0	0	0	0.024747	1	2137	2137		15.921	0	1	116350	+		36095	31778	24722	24774	41685	41685					0.08146535982609748
KVFVLKDDL	9	Unmodified	_KVFVLKDDL_					0	0	0			REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7989501953125	2	538.82115	1075.62775	-0.72435	-0.0003903	0.34979	0.00018848	-0.37456	-0.00020182	538.8213551835129	70.689	0.81644	70.701	70.424	71.24	0.012421					34	19	3	0	0	0	0.024506	1	8438	8438		16.473	6.2079	1	686650	+		36096	27083	24723	24775	41686	41686					0.0929577317122039
KVFWLIPP	8	Unmodified	_KVFWLIPP_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7796936035156	2	500.304939	998.595324	-0.54611	-0.00027322	2.8963	0.0014491	2.3502	0.0011758	500.3063434571611	33.051	0.65587	33.051	32.865	33.521	0					34	17	2	0	0	0	0.027866	1	2324	2324		28.254	2.8041	1	3629600			36097	8341	24724	24776	41687	41687					0.09597030558904862
KVFWRVTL	8	Unmodified	_KVFWRVTL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.27197265625	2	524.818744	1047.62294	-0.71083	-0.00037306	-3.4652	-0.0018186	-4.176	-0.0021917	524.8166173911243	38.832	0.6467	38.734	38.552	39.199	-0.098755					35	17	3	0	0	0	0.027866	1	3350	3350		38.806	4.6336	1	1284400			36098	7239	24725	24777	41688	41688					0.101029338191438
KVGEKPTQ	8	Unmodified	_KVGEKPTQ_					0	0	0			REV__ENST00000307241.5_1_12:94942028-94943309:+|nuORF	REV__ENST00000307241.5_1_12:94942028-94943309:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.29205322265625	2	443.753267	885.491981	-0.029982	-1.3305E-05	0.83682	0.00037134	0.80684	0.00035804	443.7534724734295	36.994	0.54632	37.026	36.756	37.303	0.032269					18	13	2	0	0	0	0.027866	1	2938	2938		27.882	2.3082	1	125450	+		36099	26661	24726	24778	41689	41689					0.04465498380432109
KVGEKPVEV	9	Unmodified	_KVGEKPVEV_					0	0	0		ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7662048339844	2	492.78985	983.565146	0.50006	0.00024642	-1.2013	-0.00059198	-0.70123	-0.00034556	492.78907812277447	77.88	0.37118	77.669	77.333	77.705	-0.21087					13	8	2	0	0	0	0.024344	1	9569	9569		54.776	13.998	1	238390			36100	5605	24727	24779	41690	41690					0.07270627103048355
KVGGALGLP	9	Unmodified	_KVGGALGLP_					0	0	0		ENST00000380593.4_1_20:2795617-2795865:+|nuORF	ENST00000380593.4_1_20:2795617-2795865:+|nuORF	ENST00000380593.4_1_20:2795617-2795865:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.158447265625	2	406.255446	810.496338	0.30706	0.00012474	3.4192	0.0013891	3.7263	0.0015138	406.2566947825784	34.647	0.9131	34.44	34.326	35.239	-0.20696					34	22	2	0	0	0	0.024541	1	2605	2605		12.959	5.7658	1	156330			36101	13313	24728	24780	41691	41691					0.08351007593978466
KVGGRRALR	9	Unmodified	_KVGGRRALR_					0	0	0			REV__ENSG00000278705|ENST00000377745|H4C2	REV__ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8277282714844	2	506.827966	1011.64138	3.2756	0.0016602	-3.35	-0.0016979	-0.074362	-3.7689E-05	506.8261661714843	17.324	0.39641	17.324	17.102	17.498	0					19	7	4	0	0	0	0.72875	1	161	161		44.117	5.3107	1	418240	+		36102	25191	24729	24781	41692	41692					0.1360248851368624
KVGGRRALR	9	Unmodified	_KVGGRRALR_					0	0	0			REV__ENSG00000278705|ENST00000377745|H4C2	REV__ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8278503417969	2	506.827966	1011.64138	0.35575	0.00018031	-0.3412	-0.00017293	0.01455	7.3746E-06	506.82766891796035	17.443	0.36868	17.301	17.134	17.503	-0.14278					18	7	3	0	0	0	0.59099	1	155	155		53.351	5.4358	1	302900	+		36103	25191	24729	24781	41693	41693					0.1360248851368624
KVGKKKVVPP	10	Unmodified	_KVGKKKVVPP_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2565307617188	2	540.368601	1078.72265	-0.8704	-0.00047034	0.70815	0.00038266	-0.16225	-8.7673E-05	540.3687189404837	48.291	0.39387	48.104	47.94	48.334	-0.18684					18	10	2	0	0	0	0.03519	1	4797	4797		10.265	0	1	207920	+		36104	26419	24730	24782	41694	41694					0.18643751433069156
KVGKRGPVG	9	Unmodified	_KVGKRGPVG_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2686767578125	2	449.285069	896.555585	-1.5227	-0.00068413	-1.4356	-0.00064501	-2.9583	-0.0013291	449.2838885578106	52.366	0.62126	52.097	51.656	52.277	-0.26903					23	16	2	0	0	0	0.024381	1	5400	5400		45.952	10.751	1	138410	+		36105	20165	24731	24783	41695	41695					0.10316903608190842
KVGKRGPVG	9	Unmodified	_KVGKRGPVG_					0	0	0			REV__ENSG00000050767|ENST00000390654|COL23A1	REV__ENSG00000050767|ENST00000390654|COL23A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	449.285069	896.555585	-0.30223	-0.00013579	-0.77237	-0.00034702	-1.0746	-0.0004828	449.2845027469657	52.118	0.40634	52.209	52.119	52.526	0.091942	0.093406	-0.00033373	NaN	35.618	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65833	+		36106	20165	24731	24783							0.10316903608190842
KVGLIKYYD	9	Unmodified	_KVGLIKYYD_					0	0	0			REV__ENSG00000102580|ENST00000602402|DNAJC3	REV__ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2418212890625	2	549.813325	1097.6121	-0.054337	-2.9875E-05	-0.28482	-0.0001566	-0.33916	-0.00018648	549.8132409897584	49.749	0.34417	49.469	49.24	49.584	-0.27977					15	8	2	0	0	0	0.024374	1	5005	5005		32.812	0	1	235100	+		36107	21317	24732	24784	41696	41696					0.06719486654174034
KVGLKTILS	9	Unmodified	_KVGLKTILS_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2738342285156	2	479.81841	957.622267	-0.67385	-0.00032332	-0.47942	-0.00023004	-1.1533	-0.00055336	479.8180963850066	39.179	0.49968	38.956	38.686	39.186	-0.22311					18	13	2	0	0	0	0.024541	1	3318	3318		14.137	0	1	168730			36108	2873	24733	24785	41697	41697					0.14176094379422466
KVGLKTILS	9	Unmodified	_KVGLKTILS_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.27490234375	2	479.81841	957.622267	0.15268	7.3258E-05	-1.3515	-0.00064847	-1.1988	-0.00057522	479.8176613689093	39.189	0.36135	38.964	38.771	39.132	-0.2257					18	9	2	0	0	0	0.024495	1	3307	3307		19.997	3.5236	1	229160			36109	2873	24733	24785	41698	41698					0.14176094379422466
KVGLKTILS	9	Unmodified	_KVGLKTILS_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.81841	957.622267	-0.59721	-0.00028655	-0.91064	-0.00043694	-1.5078	-0.00072349	479.8178278745772	39.043	0.4213	38.879	38.659	39.081	-0.16458	-0.053911	3.4434E-05	NaN	19.997	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228860			36110	2873	24733	24785							0.14176094379422466
KVGPLRPS	8	Unmodified	_KVGPLRPS_					0	0	0			REV__ENST00000425081.2_1_17:1420280-1421117:+|nuORF	REV__ENST00000425081.2_1_17:1420280-1421117:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	427.2654724121094	2	427.266345	852.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.219	1	66.249	65.749	66.749	0.030106								0	0	0	0.85517	1	7797	7797		30.504	1.3541	1		+		36111	32244	24734	24786	41699	41699					0.08597812342566158
KVGPVPVLV	9	Unmodified	_KVGPVPVLV_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.3027038574219	2	454.302396	906.590239	-0.13391	-6.0836E-05	0.25357	0.0001152	0.11966	5.436E-05	454.30240875554233	60.384	0.89383	60.384	60.027	60.921	0					68	23	4	0	0	0	0.55828	1	6963	6963		55.504	0.73953	1	5804800			36112	2815	24735	24787	41700	41700					0.13320726696269958
KVGPVPVLV	9	Unmodified	_KVGPVPVLV_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.3023986816406	2	454.302396	906.590239	-0.40778	-0.00018525	0.48158	0.00021878	0.073808	3.3531E-05	454.30249065456167	60.652	1.1657	60.439	60	61.166	-0.21339					78	30	4	0	0	0	0.40179	1	6953	6953		65.803	28.775	1	5020400			36113	2815	24735	24787	41701	41701					0.13320726696269958
KVGPVPVLV	9	Unmodified	_KVGPVPVLV_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.30255126953125	2	454.302396	906.590239	-1.6978	-0.00077133	1.831	0.00083181	0.13311	6.0474E-05	454.3030965930214	60.403	1.1292	60.481	59.974	61.103	0.078888					72	29	4	0	0	0	0.52323	1	6880	6880		57.811	5.5121	1	5922700			36114	2815	24735	24787	41702	41702					0.13320726696269958
KVGPVPVLV	9	Unmodified	_KVGPVPVLV_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	454.302396	906.590239	-0.1451	-6.5919E-05	0.33212	0.00015088	0.18702	8.4966E-05	454.30239685516165	60.597	0.83844	60.391	60.05	60.889	-0.20599	-0.030513	-0.00031287	NaN	65.803	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1331100			36115	2815	24735	24787							0.13320726696269958
KVGPVPVLV	9	Unmodified	_KVGPVPVLV_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	454.302396	906.590239	-0.94042	-0.00042723	1.0793	0.00049031	0.13884	6.3074E-05	454.30273222996027	60.568	0.75726	60.392	60.076	60.833	-0.1761	-0.030085	0.00036598	NaN	65.803	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1392300			36116	2815	24735	24787							0.13320726696269958
KVGPVPVLV	9	Unmodified	_KVGPVPVLV_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	454.302396	906.590239	-0.62797	-0.00028529	0.64023	0.00029086	0.012267	5.5729E-06	454.30252527209245	60.697	0.68115	60.443	60.132	60.813	-0.25373	0.021547	-3.292E-05	NaN	65.803	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1182900			36117	2815	24735	24787							0.13320726696269958
KVGQALVW	8	Unmodified	_KVGQALVW_					0	0	0			REV__nc|ENSG00000177963|Q9NPQ8-2|RIC8A	REV__nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.7686462402344	2	450.76872	899.522887	-0.45825	-0.00020656	-4.4381	-0.0020006	-4.8964	-0.0022071	450.76670321802317	35.271	0.86373	35.058	34.685	35.548	-0.21246					60	21	4	0	0	0	0.81662	1	2694	2694		57.811	2.3071	1	7994500	+		36118	36976	24736	24788	41703	41703					0.06910696485317658
KVGRPRSTM	9	Unmodified	_KVGRPRSTM_					0	0	0			REV__ENSG00000120333|ENST00000476371|MRPS14	REV__ENSG00000120333|ENST00000476371|MRPS14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2691650390625	2	516.292568	1030.57058	-0.4258	-0.00021984	0.99014	0.0005112	0.56434	0.00029137	516.2934437065885	50.818	0.51305	50.818	50.479	50.992	0					23	14	2	0	0	0	0.024263	1	5375	5375		71.296	5.4925	1	534150	+		36119	22528	24737	24789	41704	41704					0.05652027413862015
KVGRPRSTMV	10	Unmodified	_KVGRPRSTMV_					0	0	0			REV__ENSG00000120333|ENST00000476371|MRPS14	REV__ENSG00000120333|ENST00000476371|MRPS14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.26611328125	2	565.826775	1129.639	-0.57531	-0.00032553	-0.040819	-2.3096E-05	-0.61613	-0.00034862	565.8267080836571	69.654	0.54165	69.387	69.121	69.662	-0.26725					18	12	2	0	0	0	0.03519	1	8086	8086		45.972	7.1661	1	135630	+		36120	22528	24738	24790	41705	41705					0.07936271993708033
KVGRPRSTMV	10	Unmodified	_KVGRPRSTMV_					0	0	0			REV__ENSG00000120333|ENST00000476371|MRPS14	REV__ENSG00000120333|ENST00000476371|MRPS14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.26708984375	2	565.826775	1129.639	-0.20503	-0.00011601	-0.70876	-0.00040104	-0.91379	-0.00051705	565.8263656125414	69.544	0.37066	69.322	69.103	69.474	-0.22246					17	8	3	0	0	0	0.03519	1	8074	8074		28.081	9.8194	1	206710	+		36121	22528	24738	24790	41706	41706					0.07936271993708033
KVGRSIELI	9	Unmodified	_KVGRSIELI_					0	0	0			REV__APOL1|p.M329I|1|0.13|ENSG00000100342|chr22:36265823-36265823|G/C|missense_variant	REV__APOL1|p.M329I|1|0.13|ENSG00000100342|chr22:36265823-36265823|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.7901611328125	2	507.818941	1013.62333	-0.25996	-0.00013201	-0.14823	-7.5274E-05	-0.40819	-0.00020728	507.8187205224406	60.769	0.31279	60.563	60.421	60.734	-0.20599					14	7	2	0	0	0	0.024447	1	6794	6794		32.812	3.6629	1	129290	+		36122	19156	24739	24791	41707	41707					0.1170630874833023
KVGSFSQNV	9	Unmodified	_KVGSFSQNV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-3|CASP2;ENST00000481483.1_1_7:142988711-142991459:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2565612792969	2	483.256174	964.497795	1.2891	0.00062297	-0.97895	-0.00047308	0.31015	0.00014988	483.2555695028797	37.025	1.2269	37.025	36.44	37.667	0					65	32	3	0	0	0	0.16539	3	2988	2976;2988;3001		96.034	31.086	1	7587900			36123	15509	24740	24792	41708;41709;41710	41709					0.01412596892100737
KVGSFSQNV	9	Unmodified	_KVGSFSQNV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-3|CASP2;ENST00000481483.1_1_7:142988711-142991459:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2569274902344	2	483.256174	964.497795	0.031289	1.5121E-05	0.14191	6.8579E-05	0.1732	8.3699E-05	483.25613756707355	36.872	1.1916	36.809	36.224	37.415	-0.063385					66	31	3	0	0	0	0.09527	3	2941	2930;2941;2954		112.11	37.852	1	7466500			36124	15509	24740	24792	41711;41712;41713	41712					0.01412596892100737
KVGSFSQNV	9	Unmodified	_KVGSFSQNV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-3|CASP2;ENST00000481483.1_1_7:142988711-142991459:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.2569885253906	2	483.256174	964.497795	-0.41494	-0.00020052	0.72463	0.00035018	0.30969	0.00014966	483.2564039789149	36.971	1.2434	37.005	36.474	37.717	0.034107					53	32	3	0	0	0	0.14087	2	2920	2920;2933		101.46	33.966	1	6708700			36125	15509	24740	24792	41714;41715	41714					0.01412596892100737
KVGSFSQNV	9	Unmodified	_KVGSFSQNV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-3|CASP2;ENST00000481483.1_1_7:142988711-142991459:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.256174	964.497795	0.56066	0.00027094	1.6718	0.00080793	2.2325	0.0010789	483.25550278131175	37.045	0.15384	36.852	36.735	36.889	-0.193	-0.070788	0.0017141	NaN	112.11	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37899			36126	15509	24740	24792							0.01412596892100737
KVGTEIEP	8	Unmodified	_KVGTEIEP_					0	0	0			REV__nc|ENSG00000213995|Q8IW45-2|NAXD	REV__nc|ENSG00000213995|Q8IW45-2|NAXD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2481384277344	2	436.739825	871.465098	0.40847	0.0001784	2.6936	0.0011764	3.102	0.0013548	436.7407329524381	71.179	0.26931	71.189	71.05	71.319	0.010735					9	6	2	0	0	0	0.027866	1	8532	8532		55.504	9.5523	1	142090	+		36127	37129	24741	24793	41716	41716					0.024223897692309038
KVGTRLVF	8	Unmodified	_KVGTRLVF_					0	0	0		nc|ENSG00000078319|A4D2B8-3|PMS2P1;nc|ENSG00000078319|A4D2B8-2|PMS2P1;nc|ENSG00000078319|A4D2B8|PMS2P1;ENST00000412466.1_1_7:66760598-66761937:-|nuORF;nc|ENSG00000123965|A8MQ11|PMS2P5;nc|ENSG00000291154|O95744|PMS2P2	nc|ENSG00000078319|A4D2B8-3|PMS2P1;nc|ENSG00000291154|O95744|PMS2P2	nc|ENSG00000291154|O95744|PMS2P2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.2645568847656	2	460.28982	918.565087	-0.26359	-0.00012133	0.99573	0.00045832	0.73214	0.000337	460.2898423621473	92.194	1.1485	92.185	91.451	92.6	-0.0082932					56	27	3	0	0	0	0.027866	1	11671	11671		12.959	5.2689	1	814140			36128	18089;18837	24742	24794	41717	41717					0.10254671893699197
KVGTVVAPP	9	Unmodified	_KVGTVVAPP_					0	0	0			REV__ENST00000432473.1_1_22:42760556-42760673:-|nuORF	REV__ENST00000432473.1_1_22:42760556-42760673:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.2589416503906	2	434.268553	866.522553	-0.39039	-0.00016953	0.41165	0.00017877	0.021263	9.234E-06	434.2684135658236	43.401	0.25862	43.164	43.024	43.282	-0.23737					9	6	2	0	0	0	0.024405	1	3979	3979		35.618	7.364	1	85764	+		36129	32384	24743	24795	41718	41718					0.08395276765463677
KVGVGVGRGW	10	Unmodified	_KVGVGVGRGW_					0	0	0		ENST00000567228.1_1_16:67229659-67232023:+|nuORF	ENST00000567228.1_1_16:67229659-67232023:+|nuORF	ENST00000567228.1_1_16:67229659-67232023:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8109130859375	2	507.795801	1013.57705	-0.86059	-0.000437	1.0044	0.00051004	0.14382	7.3032E-05	508.2977950747939	45.707	0.37595	45.505	45.293	45.669	-0.20226					23	10	3	0	0	0	0.03519	1	4327	4327		19.997	0	1	239650			36130	16958	24744	24796	41719	41719					0.07080288636893783
KVHAVIGVL	9	Unmodified	_KVHAVIGVL_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2952880859375	2	468.30547	934.596387	-0.63552	-0.00029762	-0.20566	-9.6313E-05	-0.84118	-0.00039393	468.3052695227698	62.457	1.282	62.457	62.384	63.666	0					42	33	2	0	0	0	0.024412	1	7430	7430		24.203	11.244	1	405730			36131	2245	24745	24797	41720	41720					0.12647244927802603
KVHLDGSGSR	10	Unmodified	_KVHLDGSGSR_					0	0	0		ENST00000549441.6_1_12:49741742-49742552:+|nuORF	ENST00000549441.6_1_12:49741742-49742552:+|nuORF	ENST00000549441.6_1_12:49741742-49742552:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2828979492188	2	528.283254	1054.55196	-0.89008	-0.00047021	0.57792	0.00030531	-0.31215	-0.00016491	528.2833840895249	23.465	0.5332	23.404	23.152	23.685	-0.06086					34	12	4	0	0	0	0.96822	1	923	923		49.536	3.5638	1	730010			36132	16566	24746	24798	41721	41721					0.02686189043674858
KVHMMGPK	8	Unmodified	_KVHMMGPK_					0	0	0		ENST00000341446.8_1_12:125511739-125511865:+|nuORF	ENST00000341446.8_1_12:125511739-125511865:+|nuORF	ENST00000341446.8_1_12:125511739-125511865:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2846374511719	2	464.248783	926.483013	-0.41057	-0.00019061	0.11405	5.2945E-05	-0.29653	-0.00013766	464.24870894487054	25.18	0.65026	24.953	24.581	25.231	-0.22683					22	14	2	0	0	0	0.027866	1	1140	1140		3.41	0	1	151650			36133	12494	24747	24799	41722	41722					0.01683110218755246
KVHPAVVI	8	Unmodified	_KVHPAVVI_					0	0	0		ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	431.77947998046875	2	431.779088	861.543623	-0.64016	-0.00027641	1.2666	0.00054691	0.62647	0.0002705	431.77950685724386	35.383	0.9695	35.383	35.093	36.063	0					68	25	4	0	0	0	0.37803	2	2720	2720;2731		100.27	34.375	1	2530400			36134	4128	24748	24800	41723;41724	41723					0.10731286864995582
KVHPAVVI	8	Unmodified	_KVHPAVVI_					0	0	0		ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	431.7795715332031	2	431.779088	861.543623	-0.91431	-0.00039478	1.5252	0.00065856	0.6109	0.00026378	431.7796306301195	35.234	1.0464	35.212	34.905	35.951	-0.021767					67	27	4	0	0	0	0.37803	2	2681	2681;2691		100.27	42.82	1	2573200			36135	4128	24748	24800	41725;41726	41725					0.10731286864995582
KVHPAVVI	8	Unmodified	_KVHPAVVI_					0	0	0		ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	431.7792053222656	2	431.779088	861.543623	-0.08951	-3.8649E-05	0.59495	0.00025689	0.50544	0.00021824	431.7792112610483	35.321	0.9868	35.365	35.05	36.037	0.044056					66	25	4	0	0	0	0.48546	3	2648	2648;2658;2671		86.935	29.482	1	2519700			36136	4128	24748	24800	41727;41728;41729	41727					0.10731286864995582
KVHVRPLINQF	11	Unmodified	_KVHVRPLINQF_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2539367675781	3	450.93834	1349.79319	-0.25139	-0.00011336	-2.769	-0.0012487	-3.0204	-0.001362	450.93706210666585	36.712	0.75449	36.75	36.478	37.232	0.038044					49	19	4	0	0	0	0.024734	1	2899	2899		48.602	21.852	1	254530	+		36137	29177	24749	24801	41730	41730					0.13228424750741397
KVIAQHQNL	9	Unmodified	_KVIAQHQNL_					0	0	0		ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2816162109375	2	525.806365	1049.59818	-1.9939	-0.0010484	3.7689	0.0019817	1.775	0.00093331	525.8083113961317	90.949	0.66303	90.949	90.636	91.299	0					24	15	2	0	0	0	0.023417	1	11536	11536		79.451	26.1	1	280880			36138	4242	24750	24802	41731	41731					0.07536253945750104
KVIAQHQNL	9	Unmodified	_KVIAQHQNL_					0	0	0		ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2808837890625	2	525.806365	1049.59818	-0.52274	-0.00027486	2.0084	0.001056	1.4857	0.00078117	525.8071746663345	91.003	0.49466	90.99	90.744	91.238	-0.012383					19	11	2	0	0	0	0.020004	1	11509	11509		119.56	42.783	1	296160			36139	4242	24750	24802	41732	41732					0.07536253945750104
KVIAQHQNL	9	Unmodified	_KVIAQHQNL_					0	0	0		ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.28125	2	525.806365	1049.59818	0.44634	0.00023469	1.1651	0.00061264	1.6115	0.00084733	525.8070112490831	91.114	0.57758	91.125	90.7	91.278	0.011269					23	13	2	0	0	0	0.019502	1	11462	11462		111.65	54.927	1	266550			36140	4242	24750	24802	41733	41733					0.07536253945750104
KVIDAPPPM	9	Oxidation (M)	_KVIDAPPPM(Oxidation (M))_		KVIDAPPPM(1)		KVIDAPPPM(82)	0	0	1			REV__ENSG00000155849|ENST00000310758|ELMO1	REV__ENSG00000155849|ENST00000310758|ELMO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7744140625	2	492.265153	982.515753	1.3774	0.00067803	2.9008	0.0014279	4.2781	0.002106	492.26625660966	37.134	1.1452	37.134	36.724	37.869	0					75	30	4	0	0	0	0.2508	1	2961	2961		82.241	29.304	1	12836000	+		36141	25032	24751	24803	41734	41734		742			0.023795958225832692
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.82958984375	2	567.829506	1133.64446	-1.0611	-0.00060254	0.41906	0.00023795	-0.64206	-0.00036458	567.829810383007	50.039	0.85036	50.039	49.694	50.544	0					83	24	5	0	0	0	0.013946	2	5201	5201;5213		195.05	101.85	1	5927600			36142	5684	24752	24804	41735;41736	41735					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.8292236328125	2	567.829506	1133.64446	-0.17232	-9.7851E-05	-0.27317	-0.00015511	-0.44549	-0.00025296	567.829380115297	50.286	0.77439	50.134	49.817	50.592	-0.1512					69	22	5	0	0	0	0.013946	3	5224	5213;5224;5236		181.41	73.32	1	6689200			36143	5684	24752	24804	41737;41738;41739	41738					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.8296508789062	2	567.829506	1133.64446	-0.94082	-0.00053422	0.51549	0.00029271	-0.42533	-0.00024151	567.8298303622103	49.978	0.74397	50.059	49.7	50.444	0.08099					61	21	4	0	0	0	0.013946	4	5114	5114;5125;5137;5150		209.19	124.28	1	7154300			36144	5684	24752	24804	41740;41741;41742;41743	41740					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.828857421875	2	567.829506	1133.64446	0.19132	0.00010864	-0.82565	-0.00046883	-0.63432	-0.00036019	567.8291218762126	50.137	0.85994	50.031	49.671	50.531	-0.10558					58	22	4	0	0	0	0.071379	2	5072	5072;5084		120.87	30.499	1	2373200			36145	5684	24752	24804	41744;41745	41744					0.08298274057165145
KVIDEIYRV	9	Unmodified	_KVIDEIYRV_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.8286743164062	2	567.829506	1133.64446	0.32673	0.00018553	-0.80889	-0.00045931	-0.48216	-0.00027378	567.8291508534147	50.231	0.8168	50.05	49.717	50.534	-0.18071					55	21	4	0	0	0	0.24031	1	5083	5083		83.647	25.401	1	2207600			36146	5684	24752	24804	41746	41746					0.08298274057165145
KVIDTQQKV	9	Unmodified	_KVIDTQQKV_					0	0	0		ENST00000507185.1_1_5:139661015-139682658:-|nuORF;ENSG00000113068|ENST00000261813|PFDN1	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.8139038085938	2	529.813856	1057.61316	-0.84513	-0.00044776	0.26072	0.00013814	-0.58441	-0.00030963	529.8139839017065	26.888	0.78226	26.888	26.615	27.398	0					60	19	5	0	0	0	0.0089529	3	1409	1399;1409;1421		239.13	53.577	1	6168800			36147	3257	24753	24805	41747;41748;41749	41748					0.0866570102307378
KVIDTQQKV	9	Unmodified	_KVIDTQQKV_					0	0	0		ENST00000507185.1_1_5:139661015-139682658:-|nuORF;ENSG00000113068|ENST00000261813|PFDN1	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8138427734375	2	529.813856	1057.61316	-0.74869	-0.00039667	0.098831	5.2362E-05	-0.64986	-0.0003443	529.8138878506537	26.86	1.1034	26.847	26.579	27.683	-0.012983					70	28	5	0	0	0	0.016506	3	1405	1384;1393;1405		209.19	50.718	1	6374400			36148	3257	24753	24805	41750;41751;41752	41752					0.0866570102307378
KVIDTQQKV	9	Unmodified	_KVIDTQQKV_					0	0	0		ENST00000507185.1_1_5:139661015-139682658:-|nuORF;ENSG00000113068|ENST00000261813|PFDN1	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENST00000507185.1_1_5:139661015-139682658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.814208984375	2	529.813856	1057.61316	-0.82769	-0.00043852	0.19604	0.00010387	-0.63164	-0.00033465	529.8139424719732	26.734	1.0722	26.815	26.499	27.571	0.081293					68	27	5	0	0	0	0.0089529	3	1336	1325;1336;1349		239.13	53.577	1	6294200			36149	3257	24753	24805	41753;41754;41755	41754					0.0866570102307378
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.8214111328125	2	544.82115	1087.62775	0.32067	0.00017471	-1.2449	-0.00067827	-0.92427	-0.00050356	544.8205553524874	63.614	1.1857	63.614	63.161	64.347	0					101	32	6	0	0	0	0.025498	5	7477	7427;7439;7451;7464;7477		145.16	46.574	1	39244000			36150	10320	24754	24806	41756;41757;41758;41759;41760	41760					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.8211059570312	2	544.82115	1087.62775	-0.56418	-0.00030738	-0.55294	-0.00030125	-1.1171	-0.00060863	544.8209404073132	63.823	1.0898	63.572	63.3	64.39	-0.25141					95	29	5	0	0	0	0.015752	6	7470	7433;7445;7457;7470;7483;7497		158.07	48.596	1	41824000			36151	10320	24754	24806	41761;41762;41763;41764;41765;41766	41764					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.8212280273438	2	544.82115	1087.62775	0.88094	0.00047995	-1.989	-0.0010837	-1.1081	-0.00060372	544.8201408827375	63.59	1.0815	63.644	63.338	64.419	0.054104					101	29	6	0	0	0	0.041068	6	7386	7349;7361;7373;7386;7399;7413		132.76	42.388	1	39257000			36152	10320	24754	24806	41767;41768;41769;41770;41771;41772	41770					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.8216552734375	2	544.82115	1087.62775	-0.39371	-0.0002145	-0.09537	-5.196E-05	-0.48908	-0.00026646	544.8210363388142	63.832	0.97411	63.604	63.328	64.302	-0.22773					64	24	4	0	0	0	0.10464	3	7251	7226;7238;7251		109.48	31.215	1	6084900			36153	10320	24754	24806	41773;41774;41775	41775					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.8213500976562	2	544.82115	1087.62775	-0.2376	-0.00012945	-0.13086	-7.1295E-05	-0.36846	-0.00020074	544.8209747173806	63.816	1.1289	63.624	63.342	64.471	-0.19243					69	28	5	0	0	0	0.062622	3	7231	7231;7241;7253		124.08	39.165	1	5114600			36154	10320	24754	24806	41776;41777;41778	41776					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.8206787109375	2	544.82115	1087.62775	-0.40687	-0.00022167	0.020671	1.1262E-05	-0.38619	-0.00021041	544.8210860612555	63.914	1.1495	63.656	63.313	64.463	-0.25824					65	29	4	0	0	0	0.041068	3	7234	7225;7234;7247		132.76	39.562	1	5582700			36155	10320	24754	24806	41779;41780;41781	41780					0.08743773171227076
KVIETLPGF	9	Unmodified	_KVIETLPGF_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7933654785156	2	502.294768	1002.57498	-0.1385	-6.9568E-05	-1.5021	-0.0007545	-1.6406	-0.00082406	502.29344031421056	63.8	0.8126	63.607	63.302	64.115	-0.19243					30	20	2	0	0	0	0.024457	1	7280	7280		21.96	0	1	442260			36156	8194	24755	24807	41782	41782					0.07379815108436105
KVIFKEETL	9	Unmodified	_KVIFKEETL_					0	0	0			REV__ENST00000554952.5_1_14:53173937-53176322:+|nuORF	REV__ENST00000554952.5_1_14:53173937-53176322:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3449096679688	2	553.826432	1105.63831	-0.72173	-0.00039971	0.64502	0.00035723	-0.076702	-4.248E-05	553.8265914384484	76.839	0.53365	76.611	76.36	76.894	-0.22843					21	12	3	0	0	0	0.024539	1	9485	9485		20.947	0	1	353690	+		36157	21128	24756	24808	41783	41783					0.08971755825655237
KVIFKKKV	8	Unmodified	_KVIFKKKV_					0	0	0		nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENST00000534304.5_1_2:96525807-96601268:-|nuORF;ANKRD36C|p.S664C|1|0.19|ENSG00000174501|chr2:95925402-95925402|G/C|missense_variant;nc|ENSG00000135976|A6QL64-3|ANKRD36;ENST00000421946.2_1_2:97879127-97913404:+|nuORF;nc|ENSG00000174501|Q5JPF3-2|ANKRD36C;ENSG00000135976|ENST00000420699|ANKRD36;nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C	nc|ENSG00000174501|Q5JPF3-3|ANKRD36C;ENSG00000135976|ENST00000420699|ANKRD36;nc|ENSG00000174501|Q5JPF3|ANKRD36C	ENSG00000135976|ENST00000420699|ANKRD36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.29248046875	2	495.347138	988.679722	0.43532	0.00021564	-0.62223	-0.00030822	-0.18691	-9.2584E-05	495.34628796071553	68.45	0.23317	68.207	68.033	68.266	-0.24277					9	5	2	0	0	0	0.027866	1	7899	7899		8.2313	4.2461	1	76068			36158	4965;8476;16328	24757	24809	41784	41784					0.18492981375652562
KVIFKLPP	8	Unmodified	_KVIFKLPP_					0	0	0			REV__ENSG00000136936|ENST00000375128|XPA	REV__ENSG00000136936|ENST00000375128|XPA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.3121032714844	2	471.312764	940.610974	-1.1209	-0.00052827	1.1149	0.00052548	-0.0059179	-2.7892E-06	471.31286086812673	44.49	2.3152	44.271	43.597	45.913	-0.21939					139	63	3	0	0	0	0.027866	1	4211	4211		19.36	5.5846	1	1109200	+		36159	23709	24758	24810	41785	41785					0.13829317075942527
KVIFPAPTP	9	Unmodified	_KVIFPAPTP_					0	0	0		ENSG00000112992|ENST00000344920|NNT;ENST00000506893.1_1_5:43644868-43645650:+|nuORF	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.26165771484375	2	485.292028	968.569503	-1.1891	-0.00057707	-1.2631	-0.00061298	-2.4522	-0.00119	485.2915081905437	46.344	0.49109	46.192	45.989	46.481	-0.15156					34	13	3	0	0	0	0.024436	1	4573	4573		16.473	0	1	858640			36160	3255	24759	24811	41786	41786					0.08396136316594038
KVIFPLQPK	9	Unmodified	_KVIFPLQPK_					0	0	0		VWA5A|p.T532I|1|0.23|ENSG00000110002|chr11:124136644-124136644|C/T|missense_variant	VWA5A|p.T532I|1|0.23|ENSG00000110002|chr11:124136644-124136644|C/T|missense_variant	VWA5A|p.T532I|1|0.23|ENSG00000110002|chr11:124136644-124136644|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3060913085938	2	535.342052	1068.66955	-1.3586	-0.00072729	-1.4368	-0.00076916	-2.7953	-0.0014964	535.3411930400628	47.614	0.43904	47.673	47.489	47.929	0.059093					22	13	2	0	0	0	0.024436	1	4723	4723		38.806	10.924	1	1855600			36161	38148	24760	24812	41787	41787					0.13796373650393434
KVIFREHL	8	Unmodified	_KVIFREHL_					0	0	0		ENST00000269033.7_1_17:27957514-27957778:-|nuORF	ENST00000269033.7_1_17:27957514-27957778:-|nuORF	ENST00000269033.7_1_17:27957514-27957778:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3018798828125	2	521.313826	1040.6131	-1.3173	-0.0006867	3.5484	0.0018498	2.2311	0.0011631	521.3160519623871	60.598	0.44781	60.598	60.473	60.921	0					13	11	2	0	0	0	0.027866	1	7012	7012		37.159	5.2042	1	76785			36162	11632	24761	24813	41788	41788					0.09441745813751368
KVIGAGKSW	9	Unmodified	_KVIGAGKSW_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2795715332031	2	473.279452	944.544351	0.030121	1.4256E-05	0.17833	8.44E-05	0.20845	9.8656E-05	473.2794375333576	31.408	1.3388	31.167	30.915	32.253	-0.24109					81	32	4	0	0	0	0.014738	4	2095	2072;2082;2095;2108		163.15	70.008	1	5755800			36163	16159	24762	24814	41789;41790;41791;41792	41791					0.06986081514037323
KVIGAGKSW	9	Unmodified	_KVIGAGKSW_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.279541015625	2	473.279452	944.544351	-0.21324	-0.00010092	0.40415	0.00019128	0.19091	9.0352E-05	473.27951515221156	31.307	1.6009	31.122	30.824	32.425	-0.18503					92	38	4	0	0	0	0.015752	4	2059	2059;2069;2081;2094		158.07	74.787	1	5660700			36164	16159	24762	24814	41793;41794;41795;41796	41793					0.06986081514037323
KVIGAGKSW	9	Unmodified	_KVIGAGKSW_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2796630859375	2	473.279452	944.544351	-0.49937	-0.00023634	0.60637	0.00028698	0.107	5.064E-05	473.2796282236152	31.364	1.3216	31.212	30.928	32.25	-0.15231					84	32	4	0	0	0	0.014738	4	2063	2050;2063;2075;2088		163.15	74.508	1	5917700			36165	16159	24762	24814	41797;41798;41799;41800	41798					0.06986081514037323
KVIHEQVNHRW	11	Unmodified	_KVIHEQVNHRW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.596923828125	3	482.596865	1444.76877	-0.39719	-0.00019168	-0.064394	-3.1076E-05	-0.46158	-0.00022276	482.59680358635046	26.214	1.3203	25.978	25.762	27.082	-0.23603					100	34	4	0	0	0	0.14191	1	1328	1328		105.17	60.526	1	6548800			36166	18271	24763	24815	41801	41801					0.06417164597201008
KVIHEQVNHRW	11	Unmodified	_KVIHEQVNHRW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.596923828125	3	482.596865	1444.76877	-0.30328	-0.00014636	-0.21524	-0.00010387	-0.51852	-0.00025024	482.596763702681	26.024	1.3945	25.853	25.659	27.054	-0.17078					99	36	5	0	0	0	0.14191	1	1290	1290		105.17	75.026	1	8003600			36167	18271	24763	24815	41802	41802					0.06417164597201008
KVIHEQVNHRW	11	Unmodified	_KVIHEQVNHRW_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	482.596865	1444.76877	-0.78795	-0.00038026	0.23618	0.00011398	-0.55176	-0.00026628	482.59697354503163	26.083	1.5047	25.919	25.674	27.178	-0.16331	0.0027196	0.00026489	NaN	105.17	129	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3733800			36168	18271	24763	24815							0.06417164597201008
KVIKILSE	8	Unmodified	_KVIKILSE_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.784423828125	2	465.305136	928.595718	0.0076506	3.5599E-06	-2.6438	-0.0012302	-2.6362	-0.0012266	465.3030598831552	42.375	0.15207	42.252	42.155	42.307	-0.12299					5	3	2	0	0	0	0.027866	1	3809	3809		53.351	2.016	1	48218	+		36169	21327	24764	24816	41803	41803					0.128564054880826
KVILHNQH	8	Unmodified	_KVILHNQH_					0	0	0			REV__nc|ENSG00000102908|O94916-2|NFAT5	REV__nc|ENSG00000102908|O94916-2|NFAT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7745056152344	2	494.787976	987.561398	0.32092	0.00015879	-1.1925	-0.00059004	-0.8716	-0.00043126	494.7874424003693	21.045	0.1967	21.115	20.958	21.155	0.070732					5	3	2	0	0	0	0.027866	1	568	568		25.45	13.243	1	8722.5	+		36170	21339	24765	24817	41804	41804					0.06712002119843419
KVILINRSCSF	11	Unmodified	_KVILINRSCSF_					0	0	0		ENST00000409609.5_1_2:189159049-189159109:+|nuORF	ENST00000409609.5_1_2:189159049-189159109:+|nuORF	ENST00000409609.5_1_2:189159049-189159109:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2646789550781	3	427.244552	1278.71183	-0.41945	-0.00017921	-0.15405	-6.5819E-05	-0.5735	-0.00024503	427.2445483951787	54.027	0.45164	54.027	53.976	54.428	0					23	12	2	0	0	0	0.024723	1	5941	5941		25.068	2.5062	1	493650			36171	13783	24766	24818	41805	41805					0.08361980996482998
KVILSAFPF	9	Unmodified	_KVILSAFPF_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7614440917969	2	511.307678	1020.6008	-0.21017	-0.00010746	-1.8796	-0.00096105	-2.0898	-0.0010685	511.3061034045435	17.995	0.24841	17.789	17.614	17.863	-0.20669					6	4	2	0	0	0	0.024517	1	232	232		26.796	0	1	9370.6			36172	4250	24767	24819	41806	41806					0.09132709350694768
KVILYSPGTLS	11	Unmodified	_KVILYSPGTLS_					0	0	0		ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3424682617188	2	589.344989	1176.67542	-0.27155	-0.00016004	-3.0615	-0.0018043	-3.3331	-0.0019643	589.343051619512	103.85	0.53911	103.68	103.44	103.98	-0.16791					37	12	4	0	0	0	1.0017	1	12916	12916		36.447	6.129	1	433340			36173	5915	24768	24820	41807	41807					0.09415427371436635
KVIMRAFSR	9	Unmodified	_KVIMRAFSR_					0	0	0		ENSG00000095596|ENST00000224356|CYP26A1;nc|ENSG00000095596|O43174-2|CYP26A1	ENSG00000095596|ENST00000224356|CYP26A1	ENSG00000095596|ENST00000224356|CYP26A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3243408203125	2	554.326411	1106.63827	-0.066455	-3.6838E-05	-4.0038	-0.0022194	-4.0703	-0.0022563	554.3240706532682	50.378	0.93584	50.459	50.211	51.147	0.080994					69	26	4	0	0	0	0.2508	1	5222	5222		82.241	7.9855	1	3978000			36174	2032	24769	24821	41808	41808					0.08921477344665618
KVINALSTK	9	Unmodified	_KVINALSTK_					0	0	0			REV__ENST00000261798.9_1_5:148872814-148873015:-|nuORF	REV__ENST00000261798.9_1_5:148872814-148873015:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25	2	487.305667	972.596781	-0.612	-0.00029823	0.002451	1.1944E-06	-0.60955	-0.00029704	487.30548924733586	25.93	0.50914	25.93	25.694	26.203	0					22	11	3	0	0	0	0.024427	1	1302	1302		34.173	0	1	174180	+		36175	29637	24770	24822	41809	41809					0.10938619856983678
KVINKDKTTS	10	Unmodified	_KVINKDKTTS_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3302612304688	2	567.32987	1132.64519	0.38005	0.00021561	-0.24371	-0.00013826	0.13634	7.735E-05	567.3295892315691	102.64	0.75058	102.52	102.23	102.98	-0.1293					41	17	4	0	0	0	1.0344	1	12738	12738		41.427	0.64845	1	839410	+		36176	27683	24771	24823	41810	41810					0.08417068706239661
KVIQKACANY	10	Unmodified	_KVIQKACANY_					0	0	0			REV__ENSG00000168280|ENST00000435030|KIF5C	REV__ENSG00000168280|ENST00000435030|KIF5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.3031616210938	2	569.307884	1136.60121	-0.0013315	-7.5803E-07	-0.88683	-0.00050488	-0.88817	-0.00050564	569.3070169240783	99.112	0.4456	98.944	98.716	99.161	-0.16862					16	9	2	0	0	0	0.03519	1	12263	12263		24.519	0	1	45094	+		36177	26243	24772	24824	41811	41811					0.038377610082307
KVIRLAEC	8	Unmodified	_KVIRLAEC_					0	0	0		ENSG00000115325|ENST00000233668|DOK1;ENST00000474924.5_1_2:74781881-74782730:+|nuORF;nc|ENSG00000115325|Q99704-2|DOK1;DOK1|p.D363*|1|0.14|ENSG00000115325|chr2:74556753-74556754|-/T|frameshift_variant	ENSG00000115325|ENST00000233668|DOK1	ENSG00000115325|ENST00000233668|DOK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.273681640625	2	466.273312	930.532072	1.6413	0.00076531	-1.4803	-0.00069021	0.16107	7.5104E-05	466.2724346579977	20.568	0.63922	20.636	20.415	21.054	0.068901					26	12	4	0	0	0	0.74904	1	523	523		63.306	7.8021	1	214730			36178	3435	24773	24825	41812	41812					0.06402721779329568
KVIRVPPE	8	Unmodified	_KVIRVPPE_					0	0	0		nc|ENSG00000197580|Q9BYV7-6|BCO2;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2;ENST00000494860.5_1_11:112064591-112085724:+|nuORF	nc|ENSG00000197580|Q9BYV7-6|BCO2	nc|ENSG00000197580|Q9BYV7-6|BCO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2906494140625	2	469.295102	936.575651	-0.28323	-0.00013292	1.918	0.00090012	1.6348	0.0007672	469.29532662214064	27.992	0.41112	27.747	27.55	27.961	-0.24524					16	9	3	0	0	0	0.027866	1	1612	1612		37.159	19.794	1	110820			36179	10019	24774	24826	41813	41813					0.10482654548127357
KVISNLKIFW	10	Unmodified	_KVISNLKIFW_					0	0	0		ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000534658.5_1_6:134494506-134495951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	625.3680419921875	2	624.379166	1246.74378	0.28033	0.00017503	1.5786	0.00098562	1.8589	0.0011606	624.3801305600199	105.33	0.40593	105.21	105.03	105.44	-0.12444					24	9	3	0	0	0	0.03519	1	13115	13115		14.137	0	1	623680			36180	16335	24775	24827	41814	41814					0.1302771674190808
KVISNLKIFW	10	Unmodified	_KVISNLKIFW_					0	0	0		ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000534658.5_1_6:134494506-134495951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	625.3670654296875	2	624.379166	1246.74378	-1.72	-0.0010739	3.475	0.0021697	1.755	0.0010958	624.3813386885256	105.42	0.33914	105.29	105.09	105.43	-0.13099					18	8	3	0	0	0	0.03519	1	13127	13127		20.947	0	1	623470			36181	16335	24775	24827	41815	41815					0.1302771674190808
KVISSNTSL	9	Unmodified	_KVISSNTSL_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.77386474609375	2	474.771657	947.528761	1.1535	0.00054764	2.9241	0.0013883	4.0776	0.0019359	474.77297582327463	99.198	1.0987	99.198	98.647	99.746	0					64	24	3	0	0	0	0.93097	1	12645	12645		30.318	1.1682	1	2194500			36182	10237	24776	24828	41816	41816					0.05289750206338795
KVITWEFVLGA	11	Unmodified	_KVITWEFVLGA_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	631.3615112304688	2	631.860806	1261.70706	0.1904	0.0001203	3.7191	0.0023499	3.9095	0.0024702	631.8631859373587	66.932	0.61551	66.65	66.499	67.115	-0.28148					28	15	2	0	0	0	0.024752	1	7959	7959		40.778	18.818	1	1262700	+		36183	23259	24777	24829	41817	41817					0.08667420125357239
KVIVFFLFCV	10	Unmodified	_KVIVFFLFCV_					0	0	0			REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2108459472656	3	405.571718	1213.69332	0.17107	6.9382E-05	0.40279	0.00016336	0.57386	0.00023274	405.57159208452606	27.391	0.55483	27.148	26.911	27.466	-0.24217					27	12	3	0	0	0	0.03519	1	1507	1507		22.58	0	1	217800	+		36184	34843	24778	24830	41818	41818					0.09502471092559972
KVIVFFLFCV	10	Unmodified	_KVIVFFLFCV_					0	0	0			REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2109680175781	3	405.571718	1213.69332	0.16156	6.5525E-05	-0.15258	-6.1882E-05	0.0089833	3.6434E-06	405.5714968839387	27.252	0.76426	27.084	26.723	27.487	-0.16816					34	17	3	0	0	0	0.03519	1	1494	1494		22.58	4.0486	1	249890	+		36185	34843	24778	24830	41819	41819					0.09502471092559972
KVKAIANLY	9	Unmodified	_KVKAIANLY_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.3155822753906	2	510.316035	1018.61752	-0.55059	-0.00028097	0.022847	1.1659E-05	-0.52774	-0.00026931	510.31587147265367	40.284	0.6879	40.134	39.859	40.547	-0.1497					41	18	4	0	0	0	0.11848	1	3475	3475		106.42	18.661	1	1734100			36186	2196	24779	24831	41820	41820					0.10895210236651565
KVKAIANLY	9	Unmodified	_KVKAIANLY_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.3158874511719	2	510.316035	1018.61752	-0.3229	-0.00016478	-0.31617	-0.00016135	-0.63907	-0.00032613	510.315735023049	40.429	0.84204	40.204	39.928	40.77	-0.225					42	22	3	0	0	0	0.17455	1	3493	3493		94.006	30.7	1	2027300			36187	2196	24779	24831	41821	41821					0.10895210236651565
KVKAIRSI	8	Unmodified	_KVKAIRSI_					0	0	0			REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.23553466796875	2	457.810919	913.607286	-0.61454	-0.00028134	0.43611	0.00019965	-0.17843	-8.1689E-05	457.8109143958343	22.321	0.50928	22.135	21.906	22.415	-0.18539					18	10	3	0	0	0	0.027866	1	779	779		35.618	0	1	100470	+		36188	25725	24780	24832	41822	41822					0.14702647302067362
KVKAKSVLF	9	Unmodified	_KVKAKSVLF_					0	0	0		ENST00000444720.1_1_13:21321226-21321529:-|nuORF	ENST00000444720.1_1_13:21321226-21321529:-|nuORF	ENST00000444720.1_1_13:21321226-21321529:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.3075256347656	2	510.334227	1018.6539	0.090724	4.6299E-05	-0.34149	-0.00017427	-0.25076	-0.00012797	510.3341807219768	68.148	0.26946	67.86	67.748	68.017	-0.28834					10	6	2	0	0	0	0.024541	1	8139	8139		10.866	0	1	63765			36189	14427	24781	24833	41823	41823					0.14532087133363802
KVKALPLTV	9	Unmodified	_KVKALPLTV_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.787353515625	2	484.828778	967.643003	-0.82518	-0.00040007	0.15625	7.5756E-05	-0.66893	-0.00032431	484.8287382120372	44.702	0.48423	44.702	44.485	44.97	0					27	13	3	0	0	0	0.024374	1	4334	4334		32.812	0.85756	1	443780	+		36190	28137	24782	24834	41824	41824					0.15788684759081661
KVKCFIVALL	10	Unmodified	_KVKCFIVALL_					0	0	0			REV__ENST00000548154.5_1_12:69924680-69955992:+|nuORF	REV__ENST00000548154.5_1_12:69924680-69955992:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3297119140625	2	567.359388	1132.70422	-1.8938	-0.0010744	3.9201	0.0022241	2.0264	0.0011497	567.3611495173107	90.866	0.37373	90.866	90.678	91.051	0					11	8	2	0	0	0	0.03519	1	11492	11492		35.618	13.658	1	78339	+		36191	34872	24783	24835	41825	41825					0.1431787346684814
KVKCFIVALL	10	Unmodified	_KVKCFIVALL_					0	0	0			REV__ENST00000548154.5_1_12:69924680-69955992:+|nuORF	REV__ENST00000548154.5_1_12:69924680-69955992:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.33056640625	2	567.359388	1132.70422	-0.98548	-0.00055912	-2.2797	-0.0012934	-3.2652	-0.0018526	567.3580256888667	93.838	0.52184	93.698	93.441	93.963	-0.13995					28	11	3	0	0	0	0.03519	1	11542	11542		34.173	6.2903	1	238090	+		36192	34872	24783	24835	41826	41826					0.1431787346684814
KVKDALEFW	9	Unmodified	_KVKDALEFW_					0	0	0		ENST00000457660.6_1_11:62649366-62653989:+|nuORF;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;chr11:62871669-62876787|505|16.01|0.92|4.13|+|ENST00000538084|SLC3A2,SLC3A2	ENST00000457660.6_1_11:62649366-62653989:+|nuORF	ENST00000457660.6_1_11:62649366-62653989:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2488403320312	2	568.310949	1134.60735	1.1646	0.00066184	-2.1691	-0.0012327	-1.0045	-0.00057087	568.3097108586835	59.752	0.6599	59.554	59.214	59.874	-0.19742					37	16	3	0	0	0	0.024257	1	6609	6609		67.494	7.3754	1	673160			36193	309	24784	24836	41827	41827					0.04542602511401128
KVKDELRAI	9	Unmodified	_KVKDELRAI_					0	0	0			REV__ENSG00000171223|ENST00000302754|JUNB	REV__ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3291625976562	2	536.329673	1070.64479	0.2552	0.00013687	-1.1829	-0.00063442	-0.92769	-0.00049755	536.3290875108421	18.974	1.6147	18.813	18.589	20.204	-0.16079					74	32	5	0	0	0	0.033448	2	370	370;382		138.83	17.718	1	7859700	+		36194	26555	24785	24837	41828;41829	41828					0.11229693777045213
KVKDELRAI	9	Unmodified	_KVKDELRAI_					0	0	0			REV__ENSG00000171223|ENST00000302754|JUNB	REV__ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.329673	1070.64479	0.17227	9.2391E-05	-0.95495	-0.00051217	-0.78268	-0.00041978	536.3292010298713	19.084	1.4717	18.881	18.609	20.08	-0.20371					83	29	6	0	0	0	0.091713	3	369	358;369;394		113.41	17.221	1	7254100	+		36195	26555	24785	24837	41830;41831;41832	41831					0.11229693777045213
KVKDSLDINV	10	Unmodified	_KVKDSLDINV_					0	0	0		SH3GL3|p.E126K|1|0.14|ENSG00000140600|chr15:83572609-83572609|G/A|missense_variant	SH3GL3|p.E126K|1|0.14|ENSG00000140600|chr15:83572609-83572609|G/A|missense_variant	SH3GL3|p.E126K|1|0.14|ENSG00000140600|chr15:83572609-83572609|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8253173828125	2	565.824421	1129.63429	0.12678	7.1734E-05	3.1448	0.0017794	3.2716	0.0018511	565.8263241095059	105.16	0.30887	105.04	104.88	105.19	-0.12444					17	8	3	0	0	0	0.72729	1	13099	13099		65.465	1.2581	1	196890			36196	37871	24786	24838	41833	41833					0.0746566633195016
KVKEKAQTAS	10	Unmodified	_KVKEKAQTAS_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3163452148438	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.1088	1	10875	10875		31.53	2.3598	1	17400000	+		36197	23017	24787	24839	41834	41834					0.07820799534738399
KVKEKEKD	8	Unmodified	_KVKEKEKD_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.3230285644531	2	502.292756	1002.57096	0.016386	8.2304E-06	4.2003	0.0021098	4.2167	0.002118	502.2948149145964	74	0.43461	73.723	73.482	73.916	-0.2769					22	14	2	0	0	0	0.027866	1	8684	8684		34.173	5.023	1	1013900			36198	7442	24788	24840	41835	41835					0.06977725614706287
KVKEKKETSG	10	Unmodified	_KVKEKKETSG_					0	0	0			REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3296508789062	2	567.32987	1132.64519	0.22871	0.00012975	-0.73799	-0.00041868	-0.50928	-0.00028893	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.0992	1	11196	11196		32.812	2.3088	1	18337000	+		36199	20106	24789	24841	41836	41836					0.08417068706239661
KVKEKVQKL	9	Unmodified	_KVKEKVQKL_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000492940.1_1_7:35930257-35938044:+|nuORF;ENST00000444755.5_1_7:45764034-45767854:-|nuORF;ENST00000413875.5_1_7:45767725-45767854:-|nuORF;ENST00000413357.1_1_7:45765778-45767854:-|nuORF;ENST00000338231.7_1_7:45764075-45767854:-|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.3045043945312	2	550.363516	1098.71248	0.45359	0.00024964	-0.75729	-0.00041679	-0.30371	-0.00016715	550.3629456539954	19.02	0.39491	18.817	18.609	19.004	-0.20371					15	7	3	0	0	0	0.024257	1	367	367		67.494	19.836	1	70291			36200	3929	24790	24842	41837	41837					0.16707143707844807
KVKEKVQKL	9	Unmodified	_KVKEKVQKL_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000492940.1_1_7:35930257-35938044:+|nuORF;ENST00000444755.5_1_7:45764034-45767854:-|nuORF;ENST00000413875.5_1_7:45767725-45767854:-|nuORF;ENST00000413357.1_1_7:45765778-45767854:-|nuORF;ENST00000338231.7_1_7:45764075-45767854:-|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.363516	1098.71248	0.4381	0.00024111	-0.67336	-0.00037059	-0.23527	-0.00012948	550.3629790688045	18.923	0.39514	18.767	18.594	18.989	-0.15637	-0.011631	0.00035006	NaN	67.494	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98549			36201	3929	24790	24842							0.16707143707844807
KVKERVKAL	9	Unmodified	_KVKERVKAL_					0	0	0			REV__ENSG00000049883|ENST00000380639|PTCD2	REV__ENSG00000049883|ENST00000380639|PTCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7846069335938	2	535.855858	1069.69716	0.34124	0.00018286	1.625	0.00087078	1.9663	0.0010536	535.8563666254076	55.34	0.73706	55.34	55.049	55.786	0					53	20	4	0	0	0	0.024541	1	6169	6169		9.7057	3.7845	1	1425200	+		36202	20152	24791	24843	41838	41838					0.16510276910639732
KVKERVKAL	9	Unmodified	_KVKERVKAL_					0	0	0			REV__ENSG00000049883|ENST00000380639|PTCD2	REV__ENSG00000049883|ENST00000380639|PTCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7846069335938	2	535.855858	1069.69716	-0.5488	-0.00029408	3.0975	0.0016598	2.5487	0.0013657	535.8573546422778	55.464	0.75825	55.308	55.093	55.852	-0.15602					55	20	4	0	0	0	0.024477	1	6151	6151		20.947	3.582	1	1568400	+		36203	20152	24791	24843	41839	41839					0.16510276910639732
KVKEVVATV	9	Unmodified	_KVKEVVATV_					0	0	0			REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	REV__ENST00000371682.7_1_9:139690828-139700853:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2919006347656	2	486.808042	971.601532	0.31659	0.00015412	-1.8779	-0.00091419	-1.5613	-0.00076007	486.80741370852314	81.943	0.25417	81.714	81.608	81.862	-0.2289					6	5	2	0	0	0	0.024495	1	9853	9853		34.173	14.813	1	76522	+		36204	28733	24792	24844	41840	41840					0.11459503999753906
KVKGDTIKSSA	11	Unmodified	_KVKGDTIKSSA_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3304443359375	2	567.32987	1132.64519	-0.48805	-0.00027688	0.030002	1.7021E-05	-0.45805	-0.00025986	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.0429	1	11300	11300		27.047	4.0048	1	14972000	+		36205	26215;36902	24793	24845	41841	41841					0.08417068706239661
KVKGDVDVS	9	Unmodified	_KVKGDVDVS_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.P3757L|1|0.41|ENSG00000124942|chr11:62523147-62523147|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.26123046875	2	473.763832	945.513111	-0.88538	-0.00041946	2.5661	0.0012157	1.6808	0.00079629	473.76472342405674	25.783	0.37638	25.612	25.449	25.825	-0.17151					18	8	3	0	0	0	0.024292	1	1210	1210		49.442	3.4693	1	441840			36206	4084	24794	24846	41842	41842					0.03817463689279066
KVKGDVDVS	9	Unmodified	_KVKGDVDVS_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.P3757L|1|0.41|ENSG00000124942|chr11:62523147-62523147|G/A|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.763832	945.513111	-0.13327	-6.314E-05	-4.4158	-0.0020921	-4.5491	-0.0021552	473.76444728734725	25.625	0.99069	25.454	24.781	25.771	-0.17078	-0.078972	-0.0053922	NaN	58.782	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	967640			36207	4084	24794	24846							0.03817463689279066
KVKGKKKIL	9	Unmodified	_KVKGKKKIL_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3059692382812	2	521.378969	1040.74339	-0.55156	-0.00028757	1.6115	0.0008402	1.0599	0.00055263	521.3803766723036	47.075	0.10774	47.075	47.003	47.111	0					4	2	2	0	0	0	0.024541	1	4693	4693		7.6903	0	1	98657	+		36208	28417	24795	24847	41843	41843					0.2246434181274708
KVKGLVSKP	9	Unmodified	_KVKGLVSKP_					0	0	0			REV__nc|ENSG00000119139|Q9UDY2-6|TJP2	REV__nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2972717285156	2	478.318577	954.622602	0.98164	0.00046954	-1.0426	-0.0004987	-0.060973	-2.9165E-05	478.3179573455822	70.038	0.40929	69.746	69.551	69.96	-0.29291					19	9	3	0	0	0	0.024292	1	8447	8447		32.812	0	1	182480	+		36209	22442	24796	24848	41844	41844					0.14347514099279124
KVKGSLIKP	9	Unmodified	_KVKGSLIKP_					0	0	0			REV__ENSG00000169083|ENST00000374690|AR	REV__ENSG00000169083|ENST00000374690|AR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2924499511719	2	485.326402	968.638252	-0.82358	-0.0003997	1.155	0.00056058	0.33147	0.00016087	485.3268277396455	80.866	2.1247	80.715	80.343	82.467	-0.15169					123	51	3	0	0	0	0.024374	1	10240	10240		40.778	0	1	1477700	+		36210	26316	24797	24849	41845	41845					0.1526780061633417
KVKHCFRGY	9	Unmodified	_KVKHCFRGY_					0	0	0			REV__DPY19L4|p.E689K|1|0.34|ENSG00000156162|chr8:94789803-94789803|G/A|missense_variant	REV__DPY19L4|p.E689K|1|0.34|ENSG00000156162|chr8:94789803-94789803|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.29638671875	2	569.302936	1136.59132	-0.12202	-6.9467E-05	-4.4575	-0.0025377	-4.5795	-0.0026071	569.2993222909942	61.179	0.87823	60.973	60.463	61.341	-0.20599					30	21	2	0	0	0	0.024381	1	6865	6865		37.159	6.6555	1	163100	+		36211	19706	24798	24850	41846	41846					0.028486177935519663
KVKHCFRGY	9	Unmodified	_KVKHCFRGY_					0	0	0			REV__DPY19L4|p.E689K|1|0.34|ENSG00000156162|chr8:94789803-94789803|G/A|missense_variant	REV__DPY19L4|p.E689K|1|0.34|ENSG00000156162|chr8:94789803-94789803|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2963256835938	2	569.302936	1136.59132	-0.66556	-0.00037891	-1.3234	-0.00075343	-1.989	-0.0011323	569.3017666152006	60.973	0.88333	60.719	60.584	61.467	-0.25373					30	21	2	0	0	0	0.024205	1	6857	6857		53.351	0	1	180320	+		36212	19706	24798	24850	41847	41847					0.028486177935519663
KVKHVIKQV	9	Unmodified	_KVKHVIKQV_					0	0	0		ENSG00000198870|ENST00000371957|STKLD1;ENST00000475232.1_1_9:136245933-136250417:+|nuORF;ENST00000468046.1_1_9:136245909-136249825:+|nuORF;nc|ENSG00000198870|Q8NE28-3|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8170776367188	2	539.858401	1077.70225	-0.66138	-0.00035705	-1.5482	-0.00083578	-2.2095	-0.0011928	539.8565877769098	45.473	0.30393	45.373	45.154	45.458	-0.099445					11	8	2	0	0	0	0.024436	1	4318	4318		38.806	8.3025	1	365560			36213	10231	24799	24851	41848	41848					0.16650580773261936
KVKHVIKQV	9	Unmodified	_KVKHVIKQV_					0	0	0		ENSG00000198870|ENST00000371957|STKLD1;ENST00000475232.1_1_9:136245933-136250417:+|nuORF;ENST00000468046.1_1_9:136245909-136249825:+|nuORF;nc|ENSG00000198870|Q8NE28-3|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	ENSG00000198870|ENST00000371957|STKLD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.858401	1077.70225	-0.39864	-0.00021521	4.7752	0.002578	4.3766	0.0023627	539.8617030747878	45.661	0.27344	45.408	45.292	45.566	-0.25252	-0.010034	0.003865	NaN	82.305	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204340			36214	10231	24799	24851							0.16650580773261936
KVKHYLRI	8	Unmodified	_KVKHYLRI_					0	0	0			REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2825317382812	2	528.837468	1055.66038	-0.16881	-8.9271E-05	3.875	0.0020492	3.7061	0.0019599	528.8394712430867	62.122	0.46908	61.865	61.744	62.213	-0.25725					28	11	3	0	0	0	0.027866	1	6987	6987		25.45	2.4077	1	353680	+		36215	22229	24800	24852	41849	41849					0.13478025084737055
KVKIDKLHKLI	11	Unmodified	_KVKIDKLHKLI_					0	0	0			REV__nc|ENSG00000187109|P55209-3|NAP1L1	REV__nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.63629150390625	3	445.634257	1333.88094	0.21537	9.5974E-05	3.7138	0.001655	3.9291	0.001751	445.6358142382711	40.084	1.9182	40.084	39.733	41.652	0					203	53	5	0	0	0	1.1135	1	3562	3562		5.6988	0	1	6583600	+		36216	27915	24801	24853	41850	41850					0.22735625621498912
KVKIDKLHKLI	11	Unmodified	_KVKIDKLHKLI_					0	0	0			REV__nc|ENSG00000187109|P55209-3|NAP1L1	REV__nc|ENSG00000187109|P55209-3|NAP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.6359558105469	3	445.634257	1333.88094	0.56368	0.00025119	3.4114	0.0015202	3.9751	0.0017714	445.6356673138534	40.339	2.0526	40.227	39.792	41.845	-0.11222					213	56	4	0	0	0	1.1107	1	3568	3568		8.4073	0.37291	1	5905500	+		36217	27915	24801	24853	41851	41851					0.22735625621498912
KVKIPSNP	8	Unmodified	_KVKIPSNP_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.23095703125	2	441.774003	881.533452	0.23544	0.00010401	-0.61296	-0.00027079	-0.37752	-0.00016678	441.7737757993362	47.283	0.53253	47.09	46.85	47.382	-0.19387					20	13	2	0	0	0	0.027866	1	4620	4620		16.473	0	1	74090			36218	5936	24802	24854	41852	41852					0.08794679139748496
KVKIWLNQ	8	Unmodified	_KVKIWLNQ_					0	0	0		ENST00000450535.5_1_20:47905597-47905699:+|nuORF	ENST00000450535.5_1_20:47905597-47905699:+|nuORF	ENST00000450535.5_1_20:47905597-47905699:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2959594726562	2	514.816202	1027.61785	-0.31671	-0.00016305	-0.18479	-9.513E-05	-0.50149	-0.00025818	514.8161621569996	73.038	0.83469	72.761	72.454	73.288	-0.2769					32	19	3	0	0	0	0.027866	1	8638	8638		45.952	6.9305	1	212770			36219	14511	24803	24855	41853	41853					0.10514629956492172
KVKKAFFA	8	Unmodified	_KVKKAFFA_					0	0	0		ENST00000550125.5_1_12:49399131-49412528:-|nuORF	ENST00000550125.5_1_12:49399131-49412528:-|nuORF	ENST00000550125.5_1_12:49399131-49412528:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7644348144531	2	469.794738	937.574923	-0.053012	-2.4905E-05	-4.1277	-0.0019392	-4.1807	-0.0019641	469.79275523798526	31.91	0.82626	31.922	31.624	32.45	0.011797					29	20	2	0	0	0	0.027866	1	2141	2141		18.324	9.5021	1	348150			36220	16576	24804	24856	41854	41854					0.10363859899075578
KVKKAGDAL	9	Unmodified	_KVKKAGDAL_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.29248046875	2	465.292559	928.570566	0.80184	0.00037309	-0.48565	-0.00022597	0.31619	0.00014712	465.2922348307108	19.434	0.69434	19.234	19.007	19.701	-0.2001					24	13	3	0	0	0	0.39228	1	420	420		66.429	5.4573	1	378450			36221	9199	24805	24857	41855	41855					0.10342350685493784
KVKKALAQV	9	Unmodified	_KVKKALAQV_					0	0	0		nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.8157043457031	2	492.831852	983.649151	-0.24162	-0.00011908	0.24769	0.00012207	0.0060681	2.9906E-06	492.831799398988	20.893	0.43357	20.722	20.491	20.925	-0.1703					14	8	2	0	0	0	0.024381	1	593	593		21.96	3.6355	1	54568			36222	9311	24806	24858	41856	41856					0.15667202990584883
KVKKGSLLI	9	Unmodified	_KVKKGSLLI_					0	0	0		ENST00000428288.2_1_7:27565835-27702463:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.6992492675781	2	493.342052	984.669552	-1.5859	-0.00078238	1.2893	0.00063608	-0.29656	-0.0001463	493.3425177081962	29.14	0.60835	28.895	28.621	29.229	-0.24524					30	13	3	0	0	0	0.024541	1	1727	1727		6.3127	0	1	313750			36223	2754	24807	24859	41857	41857					0.1766037365041484
KVKKIKYE	8	Unmodified	_KVKKIKYE_					0	0	0			REV__nc|ENSG00000014123|O94874-3|UFL1	REV__nc|ENSG00000014123|O94874-3|UFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.2406616210938	2	518.331685	1034.64882	-0.36964	-0.0001916	-3.15	-0.0016327	-3.5196	-0.0018243	518.3298484287823	26.09	0.45115	26.171	25.88	26.331	0.081291					13	10	2	0	0	0	0.027866	1	1238	1238		25.574	0.12388	1	44413	+		36224	19963	24808	24860	41858	41858					0.1328778327076634
KVKKIQKDTF	10	Unmodified	_KVKKIQKDTF_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.255859375	3	412.255446	1233.74451	0.24572	0.0001013	0.14341	5.9123E-05	0.38913	0.00016042	412.2554367443892	20.923	0.62934	20.747	20.485	21.114	-0.1763					33	12	3	0	0	0	0.55987	2	602	602;618		81.525	29.997	1	553600			36225	2817	24809	24861	41859;41860	41859					0.1369851139097591
KVKKIQKDTF	10	Unmodified	_KVKKIQKDTF_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.2557678222656	3	412.255446	1233.74451	0.48772	0.00020106	-0.24673	-0.00010171	0.24099	9.935E-05	412.25524869863887	21.03	0.78521	20.835	20.533	21.319	-0.19577					42	15	4	0	0	0	0.70466	2	606	606;619		66.962	16.928	1	531110			36226	2817	24809	24861	41861;41862	41861					0.1369851139097591
KVKKIQKDTF	10	Unmodified	_KVKKIQKDTF_					0	0	0		ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	ENSG00000106819|ENST00000375544|ASPN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.25537109375	3	412.255446	1233.74451	-0.8846	-0.00036468	1.2523	0.00051625	0.36766	0.00015157	412.2559055276822	21.06	0.83593	20.847	20.574	21.41	-0.2128					38	16	3	0	0	0	0.62511	2	592	592;604		74.165	21.076	1	531860			36227	2817	24809	24861	41863;41864	41863					0.1369851139097591
KVKKKVSTL	9	Unmodified	_KVKKKVSTL_					0	0	0			REV__ENSG00000092201|ENST00000216297|SUPT16H	REV__ENSG00000092201|ENST00000216297|SUPT16H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2737426757812	2	515.852784	1029.69102	0.35444	0.00018284	-1.9858	-0.0010244	-1.6313	-0.00084153	516.3527641989743	79.922	0.41832	79.676	79.447	79.865	-0.2465					12	9	2	0	0	0	0.024541	1	9563	9563		23.042	9.2672	1	56871	+		36228	20930	24810	24862	41865	41865					0.17735758679123137
KVKKLHTF	8	Unmodified	_KVKKLHTF_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29840087890625	2	500.818744	999.622936	0.26056	0.00013049	1.0418	0.00052176	1.3024	0.00065226	500.8190832744871	104.15	0.14079	104.02	103.92	104.06	-0.12561					5	3	2	0	0	0	0.027866	1	12942	12942		24.203	7.7296	1	12065	+		36229	25024	24811	24863	41866	41866					0.12310933819117054
KVKKLKKT	8	Unmodified	_KVKKLKKT_					0	0	0		ENSG00000196704|ENST00000359904|AMZ2;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	ENSG00000196704|ENST00000359904|AMZ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2816467285156	2	486.850045	971.685536	-0.22454	-0.00010932	-1.9302	-0.00093973	-2.1548	-0.001049	486.84898633234525	89.46	0.16783	89.46	89.313	89.481	0					5	3	2	0	0	0	0.027866	1	11276	11276		3.9852	0	1	35246			36230	9913	24812	24864	41867	41867					0.19856079887313172
KVKKRKGK	8	Unmodified	_KVKKRKGK_					0	0	0		ENSG00000143674|ENST00000366624|MAP3K21;nc|ENSG00000143674|Q5TCX8-2|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7608947753906	2	486.345461	970.676368	-0.53904	-0.00026216	-3.1296	-0.0015221	-3.6687	-0.0017842	486.3441435940792	25.792	0.37638	25.621	25.449	25.825	-0.17151					10	8	2	0	0	0	0.027866	1	1205	1205		1.2052	0	1	53235			36231	5679	24813	24865	41868	41868					0.1898573132165211
KVKKTLKNL	9	Unmodified	_KVKKTLKNL_					0	0	0		TTN|p.I2709V|1|0.28|ENSG00000155657|chr2:178770667-178770667|T/C|missense_variant	TTN|p.I2709V|1|0.28|ENSG00000155657|chr2:178770667-178770667|T/C|missense_variant	TTN|p.I2709V|1|0.28|ENSG00000155657|chr2:178770667-178770667|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.366059	1070.71756	0.16059	8.6133E-05	-1.1733	-0.00062932	-1.0127	-0.00054319	536.3646583204874	19.095	0.24643	18.891	18.708	18.954	-0.20371					9	4	3	0	0	0	0.024017	1	381	381		85.161	35.136	1	23136			36232	38117	24814	24866	41869	41869					0.18503447570446951
KVKLFQTW	8	Unmodified	_KVKLFQTW_					0	0	0		ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENST00000492191.5_1_3:184017042-184018322:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7830810546875	2	525.310752	1048.60695	-0.13439	-7.0595E-05	-3.7683	-0.0019795	-3.9027	-0.0020501	525.3083739941129	49.597	0.3756	49.492	49.259	49.635	-0.10558					14	9	2	0	0	0	0.027866	1	4992	4992		24.203	0	1	131110			36233	15475	24815	24867	41870	41870					0.08459227582216045
KVKLNTKNEFQ	11	Unmodified	_KVKLNTKNEFQ_					0	0	0			REV__ENST00000475237.5_1_7:81636985-81662181:-|nuORF	REV__ENST00000475237.5_1_7:81636985-81662181:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7605285644531	3	450.257626	1347.75105	-0.56631	-0.00025498	-2.364	-0.0010644	-2.9303	-0.0013194	450.25510135011206	39.22	0.18197	38.997	38.891	39.073	-0.22311					7	4	2	0	0	0	0.024759	1	3297	3297		29.551	5.3189	1	33935	+		36234	33290	24816	24868	41871	41871					0.09108404551693638
KVKLSDASH	9	Unmodified	_KVKLSDASH_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7721252441406	2	492.777274	983.539994	-0.30018	-0.00014792	-0.5898	-0.00029064	-0.88999	-0.00043856	492.7769155310306	33.504	1.0782	33.504	33.213	34.292	0					38	28	2	0	0	0	0.024209	1	2396	2396		66.429	0	1	992440			36235	8976	24817	24869	41872	41872					0.04756572300470907
KVKNGETLF	9	Unmodified	_KVKNGETLF_					0	0	0		FAM111A|p.E328Q|1|0.12|ENSG00000166801|chr11:59152650-59152650|G/C|missense_variant;ENSG00000166801|ENST00000675163|FAM111A	FAM111A|p.E328Q|1|0.12|ENSG00000166801|chr11:59152650-59152650|G/C|missense_variant	FAM111A|p.E328Q|1|0.12|ENSG00000166801|chr11:59152650-59152650|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.2949829101562	2	518.295299	1034.57605	-0.59062	-0.00030611	0.257	0.0001332	-0.33362	-0.00017291	518.295308357616	34.417	1.0241	34.241	33.972	34.997	-0.17557					57	25	5	0	0	0	0.10174	1	2518	2518		110.12	16.924	1	1277500			36236	7607	24818	24870	41873	41873					0.06014029477319127
KVKNSQSFF	9	Unmodified	_KVKNSQSFF_					0	0	0		ENST00000593785.5_1_19:48000055-48018221:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;ENSG00000105402|ENST00000263354|NAPA;ENST00000595826.5_1_19:48010230-48018221:-|nuORF;ENST00000597160.1_1_19:48000164-48018221:-|nuORF	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.7930297851562	2	542.792924	1083.57129	-0.46445	-0.0002521	-0.028087	-1.5245E-05	-0.49254	-0.00026735	542.7927284474056	34.156	0.65778	33.95	33.668	34.326	-0.20696					55	16	4	0	0	0	0.15366	2	2496	2496;2509		98.629	23.586	1	2391200			36237	2672	24819	24871	41874;41875	41874					0.032851453345756454
KVKNSQSFF	9	Unmodified	_KVKNSQSFF_					0	0	0		ENST00000593785.5_1_19:48000055-48018221:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;ENSG00000105402|ENST00000263354|NAPA;ENST00000595826.5_1_19:48010230-48018221:-|nuORF;ENST00000597160.1_1_19:48000164-48018221:-|nuORF	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.7927856445312	2	542.792924	1083.57129	-1.6496	-0.0008954	1.1369	0.00061712	-0.51269	-0.00027829	542.7933874077379	34.203	0.67156	34.028	33.742	34.413	-0.17557					52	16	4	0	0	0	0.03849	3	2497	2483;2497;2508		134.81	14.19	1	2114500			36238	2672	24819	24871	41876;41877;41878	41877					0.032851453345756454
KVKNSQSFF	9	Unmodified	_KVKNSQSFF_					0	0	0		ENST00000593785.5_1_19:48000055-48018221:-|nuORF;NAPA|p.E155Rfs*29|1|0.24|ENSG00000105402|chr19:47493132-47493133|-/G|frameshift_variant;ENSG00000105402|ENST00000263354|NAPA;ENST00000595826.5_1_19:48010230-48018221:-|nuORF;ENST00000597160.1_1_19:48000164-48018221:-|nuORF	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	ENST00000593785.5_1_19:48000055-48018221:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.792924	1083.57129	-0.34685	-0.00018827	-0.16063	-8.719E-05	-0.50748	-0.00027546	542.7927032781606	34.316	0.69704	34.092	33.762	34.459	-0.22412	0.069121	-0.00053749	NaN	134.81	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2034900			36239	2672	24819	24871							0.032851453345756454
KVKNWPIYT	9	Unmodified	_KVKNWPIYT_					0	0	0			REV__SCAF4|p.D605N|1|0.23|ENSG00000156304|chr21:31690869-31690869|C/T|missense_variant	REV__SCAF4|p.D605N|1|0.23|ENSG00000156304|chr21:31690869-31690869|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.3108520507812	2	574.826766	1147.63898	-0.55486	-0.00031895	0.24017	0.00013805	-0.31469	-0.00018089	574.8262650144069	42.766	0.53043	42.531	42.191	42.721	-0.23527					23	13	3	0	0	0	0.024523	1	3838	3838		21.96	1.9631	1	101060	+		36240	37460	24820	24872	41879	41879					0.07106595265372562
KVKPAKAK	8	Unmodified	_KVKPAKAK_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.28765869140625	2	435.300188	868.585822	-0.6151	-0.00026775	-3.8867	-0.0016919	-4.5018	-0.0019596	435.298533029805	26.099	0.196	25.863	25.72	25.916	-0.23603					7	4	2	0	0	0	0.027866	1	1289	1289		11.511	7.1947	1	112340	+		36241	22797	24821	24873	41880	41880					0.14627262273359065
KVKPDKKP	8	Unmodified	_KVKPDKKP_					0	0	0			REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7691650390625	2	470.302927	938.591301	0.075024	3.5284E-05	0.036451	1.7143E-05	0.11148	5.2427E-05	470.30258355588313	64.896	0.97021	64.933	64.217	65.187	0.037384					36	25	2	0	0	0	0.027866	1	7580	7580		31.955	7.7521	1	205030	+		36242	27240	24822	24874	41881	41881					0.11954941065175717
KVKPPPPQ	8	Unmodified	_KVKPPPPQ_					0	0	0			REV__nc|ENSG00000100485|Q07890-2|SOS2	REV__nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7457275390625	2	445.776545	889.538538	-0.31216	-0.00013915	0.38487	0.00017157	0.07271	3.2412E-05	445.7765809023758	24.814	0.30123	24.599	24.418	24.72	-0.2151					8	6	2	0	0	0	0.027866	1	1108	1108		18.324	3.6603	1	25895	+		36243	21125	24823	24875	41882	41882					0.089349830023707
KVKPPQLVS	9	Unmodified	_KVKPPQLVS_					0	0	0			REV__ENST00000480828.5_1_2:238933952-238949976:+|nuORF	REV__ENST00000480828.5_1_2:238933952-238949976:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2928771972656	2	498.316035	994.617516	-0.40639	-0.00020251	-0.57601	-0.00028703	-0.9824	-0.00048954	498.3154545897283	47.883	0.47989	47.73	47.51	47.989	-0.15301					19	14	2	0	0	0	0.024466	1	4773	4773		18.262	0	1	138840	+		36244	33433	24824	24876	41883	41883					0.11999210236672297
KVKQHTKEEL	10	Unmodified	_KVKQHTKEEL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2588806152344	3	413.906705	1238.69829	-1.0388	-0.00042996	-4.1991	-0.001738	-5.2379	-0.002168	413.90413335156796	38.566	0.25815	38.386	38.203	38.461	-0.17929					9	6	2	0	0	0	0.03519	1	3208	3208		20.837	7.3831	1	29769			36245	3341	24825	24877	41884	41884					0.088484464889234
KVKQIRKE	8	Unmodified	_KVKQIRKE_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0|CCDC158	REV__nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7904052734375	2	514.832383	1027.65021	-0.41523	-0.00021377	0.68021	0.00035019	0.26498	0.00013642	514.8325250647868	52.254	0.42297	52.254	52.049	52.472	0					20	10	2	0	0	0	0.027866	1	5617	5617		10.265	0.5596	1	257480	+		36246	25629	24826	24878	41885	41885					0.13749417359508698
KVKQIRKE	8	Unmodified	_KVKQIRKE_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0|CCDC158	REV__nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.832383	1027.65021	-0.63906	-0.00032901	0.66277	0.00034121	0.023705	1.2204E-05	514.8325990855828	52.093	0.447	51.974	51.796	52.243	-0.11875	-0.15494	3.653E-05	NaN	39.253	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332480	+		36247	25629	24826	24878							0.13749417359508698
KVKQIRKE	8	Unmodified	_KVKQIRKE_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0|CCDC158	REV__nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.832383	1027.65021	-1.4178	-0.00072992	1.1727	0.00060374	-0.24509	-0.00012618	514.8328288552688	52.352	0.44709	52.083	51.869	52.316	-0.26903	-0.045444	0.00056158	NaN	39.253	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308120	+		36248	25629	24826	24878							0.13749417359508698
KVKQIRKE	8	Unmodified	_KVKQIRKE_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0|CCDC158	REV__nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.832383	1027.65021	-0.080487	-4.1437E-05	-0.082267	-4.2354E-05	-0.16275	-8.3791E-05	514.8322098472066	52.274	0.45811	52.09	51.815	52.273	-0.18404	-0.039002	-0.0007306	NaN	39.253	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315990	+		36249	25629	24826	24878							0.13749417359508698
KVKQKGNRC	9	Unmodified	_KVKQKGNRC_					0	0	0		nc|ENSG00000196083|Q9NPH3-2|IL1RAP	nc|ENSG00000196083|Q9NPH3-2|IL1RAP	nc|ENSG00000196083|Q9NPH3-2|IL1RAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.809814453125	2	530.805842	1059.59713	4.1628	0.0022096	2.9577	0.0015699	7.1205	0.0037796	530.8074248563545	17.696	0.93689	17.446	17.23	18.167	-0.25049					48	18	5	0	0	0	0.96322	1	215	215		27.882	3.6795	1	1780600			36250	18616	24827	24879	41886	41886					0.0697171630520188
KVKQLFNSL	9	Unmodified	_KVKQLFNSL_					0	0	0		ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.824951171875	2	538.826766	1075.63898	-0.80996	-0.00043643	-0.25016	-0.00013479	-1.0601	-0.00057122	538.8264797162481	51.139	1.2531	50.99	50.322	51.575	-0.14916					99	35	4	0	0	0	0.28753	1	5368	5368		77.318	9.8239	1	6170800			36251	1842	24828	24880	41887	41887					0.1041859526535518
KVKQLFNSL	9	Unmodified	_KVKQLFNSL_					0	0	0		ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	ENSG00000087269|ENST00000416614|NOP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8246459960938	2	538.826766	1075.63898	-1.3148	-0.00070848	0.15409	8.3027E-05	-1.1608	-0.00062545	538.8266873541683	50.827	1.2602	50.909	50.345	51.605	0.081848					89	35	4	0	0	0	0.45795	1	5274	5274		62.107	1.9892	1	5852200			36252	1842	24828	24880	41888	41888					0.1041859526535518
KVKRGGKG	8	Unmodified	_KVKRGGKG_					0	0	0		ENST00000397412.7_1_16:1725486-1725636:+|nuORF	ENST00000397412.7_1_16:1725486-1725636:+|nuORF	ENST00000397412.7_1_16:1725486-1725636:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.5598449707031	2	415.271961	828.52937	-0.41401	-0.00017193	-2.173	-0.00090239	-2.587	-0.0010743	415.27087546334417	26.857	0.50942	26.689	26.462	26.971	-0.16816					18	11	2	0	0	0	0.027866	1	1397	1397		8.2313	0	1	118970			36253	13593	24829	24881	41889	41889					0.10824634436710312
KVKRIGPH	8	Unmodified	_KVKRIGPH_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.26678466796875	2	467.800886	933.587219	0.71867	0.0003362	-1.6668	-0.00077972	-0.94811	-0.00044353	467.7997467573515	19.819	0.44429	19.585	19.424	19.868	-0.23345					9	8	2	0	0	0	0.027866	1	473	473		21.702	0	1	23279			36254	10726	24830	24882	41890	41890					0.11776896362130174
KVKRKVKK	8	Unmodified	_KVKRKVKK_					0	0	0			REV__ENST00000371826.3_1_10:91066380-91066419:+|nuORF	REV__ENST00000371826.3_1_10:91066380-91066419:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.30810546875	2	507.368936	1012.72332	-1.0273	-0.00052124	-2.0964	-0.0010636	-3.1237	-0.0015849	507.36776949075005	43.553	0.20864	43.334	43.211	43.42	-0.21939					8	5	2	0	0	0	0.027866	1	3975	3975		3.9852	2.6576	1	172840	+		36255	31180	24831	24883	41891	41891					0.21746590872783145
KVKRRLPI	8	Unmodified	_KVKRRLPI_					0	0	0			REV__nc|ENSG00000159479|Q96G25-2|MED8	REV__nc|ENSG00000159479|Q96G25-2|MED8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.323974609375	2	505.353286	1008.69202	-0.067033	-3.3875E-05	-0.69424	-0.00035084	-0.76128	-0.00038471	505.3535065514374	79.034	0.50216	78.883	78.65	79.152	-0.15051					20	11	2	0	0	0	0.027866	1	9450	9450		35.201	8.4046	1	111040	+		36256	36828	24832	24884	41892	41892					0.18802017838686425
KVKRSERR	8	Unmodified	_KVKRSERR_					0	0	0			REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3023071289062	2	529.830706	1057.64686	-0.61641	-0.00032659	-3.1865	-0.0016883	-3.8029	-0.0020149	529.82897421543	34.496	0.59769	34.29	33.968	34.565	-0.20695					28	14	3	0	0	0	0.027866	1	2532	2532		23.042	12.177	1	240210	+		36257	28784	24833	24885	41893	41893					0.12034167305500887
KVKSLDKI	8	Unmodified	_KVKSLDKI_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.8025207519531	2	465.80276	929.590967	-0.4193	-0.00019531	0.30027	0.00013987	-0.11903	-5.5444E-05	465.8027519928512	28.788	0.69166	28.619	28.337	29.029	-0.16897					35	15	3	0	0	0	0.47727	1	1705	1705		87.696	10.922	1	1017300	+		36258	23388	24834	24886	41894	41894					0.12335521345301004
KVKSLDKI	8	Unmodified	_KVKSLDKI_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.8025817871094	2	465.80276	929.590967	-0.56316	-0.00026232	0.39645	0.00018467	-0.1667	-7.7651E-05	465.8028066714346	28.828	0.64325	28.679	28.444	29.087	-0.14952					38	14	4	0	0	0	0.58886	1	1705	1705		77.318	0.54344	1	1236800	+		36259	23388	24834	24886	41895	41895					0.12335521345301004
KVKSQKLY	8	Unmodified	_KVKSQKLY_					0	0	0			REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF	REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.3072204589844	2	497.30821	992.601866	-0.61668	-0.00030668	0.23986	0.00011928	-0.37682	-0.0001874	497.30829867563693	22.034	1.0917	21.832	21.469	22.561	-0.20199					59	22	5	0	0	0	0.46709	1	724	724		88.643	9.1918	1	1673400	+		36260	33305	24835	24887	41896	41896					0.10526923719612569
KVKSTDVK	8	Unmodified	_KVKSTDVK_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.7690734863281	2	452.776742	903.538931	1.141	0.00051664	3.453	0.0015634	4.5941	0.0020801	452.77812236999637	70.557	0.71056	70.557	70.355	71.065	0					20	16	2	0	0	0	0.027866	1	8561	8561		44.117	9.9443	1	95536			36261	11068	24836	24888	41897	41897					0.08330357931561139
KVKSTDVK	8	Unmodified	_KVKSTDVK_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.776742	903.538931	1.1251	0.00050941	3.5325	0.0015994	4.6575	0.0021088	452.7781481219512	70.943	0.53857	70.65	70.455	70.993	-0.29291	-0.0013162	-0.00018067	NaN	44.117	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159830			36262	11068	24836	24888							0.08330357931561139
KVKSTDVK	8	Unmodified	_KVKSTDVK_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	452.776742	903.538931	0.10585	4.7926E-05	4.5497	0.00206	4.6555	0.0021079	452.7786055454343	70.736	0.54819	70.747	70.465	71.013	0.010735	0.095794	0.00074046	NaN	44.117	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106860			36263	11068	24836	24888							0.08330357931561139
KVKTCKQS	8	Unmodified	_KVKTCKQS_					0	0	0			REV__ENST00000533043.1_1_11:62099002-62099119:+|nuORF	REV__ENST00000533043.1_1_11:62099002-62099119:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.2509460449219	2	461.262945	920.511337	-0.71056	-0.00032775	4.4666	0.0020603	3.7561	0.0017325	461.2649253498672	30.526	0.41614	30.348	30.124	30.54	-0.17818					11	9	2	0	0	0	0.027866	1	1931	1931		35.201	0	1	35706	+		36264	34593	24837	24889	41898	41898					0.04790131399681741
KVKTDKVH	8	Unmodified	_KVKTDKVH_					0	0	0			REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.76739501953125	2	477.790184	953.565815	2.3361	0.0011162	-1.8277	-0.00087325	0.50839	0.0002429	477.78909805157645	19.677	0.67683	19.743	19.538	20.215	0.066195					19	13	3	0	0	0	0.027866	1	456	456		17.365	0	1	59800	+		36265	34919	24838	24890	41899	41899					0.08717466542748298
KVKTDTENN	9	Unmodified	_KVKTDTENN_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8162231445312	2	524.767103	1047.51965	-0.20228	-0.00010615	2.7572	0.0014469	2.555	0.0013408	525.2705631343238	75.104	0.92494	74.86	74.341	75.266	-0.24455					28	22	2	0	0	0	0.024389	1	9118	9118		51.193	25.619	1	63943			36266	18487	24839	24891	41900	41900					-0.0022064315000989154
KVKTNLVNSA	10	Unmodified	_KVKTNLVNSA_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.311279296875	2	537.319306	1072.62406	0.3081	0.00016555	-0.024712	-1.3278E-05	0.28339	0.00015227	537.8212395736517	106.49	0.28482	106.49	106.25	106.54	0					10	8	2	0	0	0	0.03519	1	13678	13678		29.17	4.9673	1	34674	+		36267	20583	24840	24892	41901	41901					0.09065103397369967
KVKTNTFIK	9	Unmodified	_KVKTNTFIK_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8157958984375	2	539.834591	1077.65463	-1.5677	-0.00084629	-3.1012	-0.0016742	-4.6689	-0.0025204	539.8331677284959	45.676	0.47501	45.474	45.194	45.669	-0.20226					14	13	2	0	0	0	0.024477	1	4311	4311		27.882	4.8398	1	785940	+		36268	23452	24841	24893	41902	41902					0.11890881782414908
KVKTRRAI	8	Unmodified	_KVKTRRAI_					0	0	0			REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2921142578125	2	486.327268	970.639983	-0.13999	-6.8082E-05	3.1592	0.0015364	3.0192	0.0014683	486.32865862260275	77.71	0.98084	77.71	77.382	78.363	0					55	23	3	0	0	0	0.027866	1	9641	9641		23.042	0	1	779550	+		36269	24750	24842	24894	41903	41903					0.15348854424928504
KVKVEPLYE	9	Unmodified	_KVKVEPLYE_					0	0	0		ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.2645874023438	2	552.818607	1103.62266	0.93779	0.00051843	-3.6209	-0.0020017	-2.6831	-0.0014833	552.8164375285548	36.906	0.63472	36.697	36.364	36.999	-0.2092					36	14	3	0	0	0	0.024405	1	2881	2881		9.7057	0	1	434210			36270	963	24843	24895	41904	41904					0.07499469308595508
KVKVLCNK	8	Carbamidomethyl (C)	_KVKVLC(Carbamidomethyl (C))NK_	KVKVLC(1)NK		KVKVLC(46)NK		0	1	0			REV__ENSG00000114686|ENST00000264995|MRPL3	REV__ENSG00000114686|ENST00000264995|MRPL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.78460693359375	2	494.802237	987.589921	-0.49876	-0.00024679	-3.0028	-0.0014858	-3.5016	-0.0017326	494.8005453124627	33.045	1.0114	32.814	32.344	33.356	-0.23107					54	24	3	0	0	0	0.027866	1	2284	2284		45.952	10.8	1	339120	+		36271	22136	24844	24896	41905	41905	287				0.09562983704768158
KVKWLHPL	8	Unmodified	_KVKWLHPL_					0	0	0			REV__ENST00000322353.3_1_2:109123982-109124054:-|nuORF	REV__ENST00000322353.3_1_2:109123982-109124054:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.789794921875	2	510.821287	1019.62802	0.61534	0.00031433	2.1436	0.001095	2.7589	0.0014093	510.82238893635565	85.738	0.45565	85.738	85.5	85.956	0					17	10	3	0	0	0	0.027866	1	10736	10736		29.842	17.635	1	255510	+		36272	30363	24845	24897	41906	41906					0.11899237681757313
KVLAGLVSGEG	11	Unmodified	_KVLAGLVSGEG_					0	0	0		nc|ENSG00000090612|Q14587-8|ZNF268;ENST00000588312.2_1_12:133758227-133778745:+|nuORF;ENST00000534953.1_1_12:133768360-133778745:+|nuORF	nc|ENSG00000090612|Q14587-8|ZNF268	nc|ENSG00000090612|Q14587-8|ZNF268	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2996826171875	2	515.300581	1028.58661	-0.31199	-0.00016077	-1.4668	-0.00075582	-1.7787	-0.00091659	515.2997956498652	62.472	0.56457	62.251	61.925	62.489	-0.22097					37	15	4	0	0	0	0.36442	1	7039	7039		85.161	1.5138	1	5646100			36273	16340	24846	24898	41907	41907					0.07346012131756652
KVLAGLVSGEG	11	Unmodified	_KVLAGLVSGEG_					0	0	0		nc|ENSG00000090612|Q14587-8|ZNF268;ENST00000588312.2_1_12:133758227-133778745:+|nuORF;ENST00000534953.1_1_12:133768360-133778745:+|nuORF	nc|ENSG00000090612|Q14587-8|ZNF268	nc|ENSG00000090612|Q14587-8|ZNF268	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.3009033203125	2	515.300581	1028.58661	-0.39946	-0.00020584	-0.96946	-0.00049956	-1.3689	-0.0007054	515.2999527550235	62.566	0.73413	62.308	61.897	62.631	-0.25824					30	21	2	0	0	0	0.63824	1	7033	7033		67.494	3.2864	1	5933000			36274	16340	24846	24898	41908	41908					0.07346012131756652
KVLAKHGR	8	Unmodified	_KVLAKHGR_					0	0	0			REV__ENSG00000149782|ENST00000279230|PLCB3	REV__ENSG00000149782|ENST00000279230|PLCB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.79339599609375	2	454.793061	907.571569	0.53213	0.00024201	-0.28979	-0.0001318	0.24233	0.00011021	454.79275125679055	17.918	0.49184	17.775	17.602	18.094	-0.14278					15	9	3	0	0	0	0.96719	1	214	214		42.474	0	1	107490	+		36275	24700	24847	24899	41909	41909					0.11408609845079809
KVLAMRSQL	9	Unmodified	_KVLAMRSQL_					0	0	0			REV__ENSG00000187535|ENST00000426508|IFT140	REV__ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7884521484375	2	523.312969	1044.61138	-0.87072	-0.00045566	-3.9182	-0.0020504	-4.7889	-0.0025061	523.3109766586113	60.698	1.0887	60.522	60.116	61.205	-0.1761					93	26	6	0	0	0	0.024323	1	6769	6769		44.117	5.3107	1	2827000	+		36276	27940	24848	24900	41910	41910					0.09086368733483141
KVLCDLIEI	9	Unmodified	_KVLCDLIEI_					0	0	0		ENST00000537473.2_1_12:57057136-57057202:-|nuORF	ENST00000537473.2_1_12:57057136-57057202:-|nuORF	ENST00000537473.2_1_12:57057136-57057202:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3035278320312	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.31037	1	10811	10811		74.255	2.3776	1	11897000			36277	16374	24849	24901	41911	41911					0.06840724545190824
KVLCGLAATGE	11	Unmodified	_KVLCGLAATGE_					0	0	0			REV__ENST00000390555.3_1_14:106135325-106136152:-|nuORF	REV__ENST00000390555.3_1_14:106135325-106136152:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.286865234375	2	531.286617	1060.55868	-0.59983	-0.00031868	-4.1877	-0.0022249	-4.7875	-0.0025436	531.2841841272507	55.14	0.3236	54.909	54.674	54.997	-0.23087					13	8	2	0	0	0	0.024771	1	5904	5904		60.118	7.1816	1	1641600	+		36278	31578	24850	24902	41912	41912					0.03082365880004545
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.31005859375	2	574.310949	1146.60735	-0.0052455	-3.0125E-06	-1.4199	-0.00081545	-1.4251	-0.00081846	574.3103022218513	70.57	1.1364	70.298	69.7	70.836	-0.27185					62	29	3	0	0	0	0.013293	3	8201	8201;8211;8227		176.09	69.404	1	2705400			36279	1996	24851	24903	41913;41914;41915	41913					0.03990602511407815
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.3106079101562	2	574.310949	1146.60735	-0.17635	-0.00010128	-1.3711	-0.00078747	-1.5475	-0.00088875	574.3102825245627	70.47	0.82474	70.213	69.643	70.468	-0.25712					55	21	4	0	0	0	0.062622	4	8202	8202;8212;8224;8243		124.08	36.094	1	2663700			36280	1996	24851	24903	41916;41917;41918;41919	41916					0.03990602511407815
KVLDFEHFL	9	Unmodified	_KVLDFEHFL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.3095092773438	2	574.310949	1146.60735	0.14435	8.29E-05	-1.3913	-0.00079906	-1.247	-0.00071616	574.3102844862633	70.425	0.75987	70.211	69.646	70.406	-0.21425					51	19	4	0	0	0	0.016758	3	8195	8184;8195;8208		153.04	59.893	1	2938500			36281	1996	24851	24903	41920;41921;41922	41921					0.03990602511407815
KVLDTKWTL	9	Unmodified	_KVLDTKWTL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.3020629882812	2	552.326599	1102.63865	-0.2906	-0.00016051	-0.22577	-0.0001247	-0.51637	-0.0002852	552.3262661614881	54.079	0.89049	54.079	53.799	54.689	0					69	25	4	0	0	0	0.024181	1	5902	5902		63.534	33.216	1	2854000		+	36282	520;509	24852	24904	41923	41923					0.09143175545523263
KVLDTKWTL	9	Unmodified	_KVLDTKWTL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.31591796875	2	552.326599	1102.63865	-0.31722	-0.00017521	-0.15799	-8.7264E-05	-0.47521	-0.00026247	552.3263658688569	54.167	0.866	54.019	53.711	54.577	-0.14724					72	24	4	0	0	0	0.079716	1	5877	5877		117.81	2.317	1	2340900		+	36283	520;509	24852	24904	41924	41924					0.09143175545523263
KVLDTKWTL	9	Unmodified	_KVLDTKWTL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.3015747070312	2	552.326599	1102.63865	-0.14366	-7.9347E-05	-0.40165	-0.00022184	-0.54531	-0.00030119	552.3261909652405	53.836	0.79483	53.933	53.63	54.424	0.096432					65	22	4	0	0	0	0.024253	1	5791	5791		70.816	3.3225	1	2262700		+	36284	520;509	24852	24904	41925	41925					0.09143175545523263
KVLDTKWTL	9	Unmodified	_KVLDTKWTL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.326416015625	2	552.326599	1102.63865	-1.0367	-0.0005726	0.11035	6.0949E-05	-0.92636	-0.00051165	552.3266504106308	53.985	2.2366	53.849	53.462	55.698	-0.13617					183	64	4	0	0	0	0.013337	9	5755	5672;5683;5693;5704;5716;5728;5741;5755;5767		223.88	92.847	1	79576000		+	36285	520;509	24852	24904	41926;41927;41928;41929;41930;41931;41932;41933;41934	41933					0.09143175545523263
KVLDTKWTL	9	Unmodified	_KVLDTKWTL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.3269653320312	2	552.326599	1102.63865	-0.10443	-5.7679E-05	-0.83174	-0.00045939	-0.93617	-0.00051707	552.3261272746585	54.123	2.1142	53.877	53.559	55.673	-0.2453					167	62	4	0	0	0	0.014115	9	5704	5695;5704;5716;5727;5739;5754;5766;5778;5789		223.88	79.991	1	84257000		+	36286	520;509	24852	24904	41935;41936;41937;41938;41939;41940;41941;41942;41943	41936					0.09143175545523263
KVLDTKWTL	9	Unmodified	_KVLDTKWTL_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENSG00000185479|ENST00000252252|KRT6B	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.3262329101562	2	552.326599	1102.63865	-0.16138	-8.9137E-05	-0.86046	-0.00047525	-1.0218	-0.00056439	552.326133433505	54.069	2.1991	53.872	53.456	55.655	-0.19739					179	62	4	0	0	0	0.013337	9	5697	5676;5685;5697;5709;5721;5734;5748;5760;5772		204.62	85.882	1	83363000		+	36287	520;509	24852	24904	41944;41945;41946;41947;41948;41949;41950;41951;41952	41946					0.09143175545523263
KVLEERPK	8	Unmodified	_KVLEERPK_					0	0	0			REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.8038024902344	2	499.803291	997.59203	-0.41784	-0.00020884	-0.29235	-0.00014612	-0.71019	-0.00035495	499.8029889448788	52.676	0.74419	52.486	51.847	52.591	-0.18982					31	18	4	0	0	0	0.027866	1	5488	5488		29.15	0	1	394870	+		36288	28569	24853	24905	41953	41953					0.09313735714226823
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.3168334960938	2	514.316566	1026.61858	-0.80494	-0.000414	-0.056856	-2.9242E-05	-0.8618	-0.00044324	514.3164871489489	32.602	1.0809	32.602	32.34	33.421	0					62	28	4	0	0	0	0.03666	3	2288	2263;2274;2288		136.27	50.517	1	5265600			36289	2259	24854	24906	41954;41955;41956	41956					0.10633424605566688
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.3162841796875	2	514.316566	1026.61858	-0.5931	-0.00030504	-0.32474	-0.00016702	-0.91783	-0.00047206	514.3163272072411	32.532	0.96126	32.543	32.299	33.261	0.011795					68	25	4	0	0	0	0.048057	4	2259	2237;2248;2259;2271		129.42	36.226	1	5591500			36290	2259	24854	24906	41957;41958;41959;41960	41959					0.10633424605566688
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.3164672851562	2	514.316566	1026.61858	-0.56059	-0.00028832	-0.19687	-0.00010125	-0.75746	-0.00038957	514.316374819757	32.42	1.0859	32.483	32.2	33.286	0.062885					75	28	4	0	0	0	0.027092	4	2197	2185;2197;2208;2220		143.89	44.581	1	4721700			36291	2259	24854	24906	41961;41962;41963;41964	41962					0.10633424605566688
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.31689453125	2	514.316566	1026.61858	-0.18006	-9.2609E-05	-0.20576	-0.00010583	-0.38582	-0.00019844	514.3163826980831	32.633	0.99295	32.397	31.998	32.991	-0.23666					60	23	4	0	0	0	0.1158	2	2276	2264;2276		107.01	35.63	1	2265000			36292	2259	24854	24906	41965;41966	41966					0.10633424605566688
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.3168334960938	2	514.316566	1026.61858	0.37347	0.00019208	-0.72916	-0.00037502	-0.35569	-0.00018294	514.3160955357226	32.652	0.99494	32.459	32.029	33.024	-0.19261					67	23	4	0	0	0	0.17845	1	2260	2260		93.143	20.264	1	1873000			36293	2259	24854	24906	41967	41967					0.10633424605566688
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	ENST00000559359.1_1_14:24613399-24613677:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.3165283203125	2	514.316566	1026.61858	-0.26061	-0.00013404	-0.18341	-9.4333E-05	-0.44402	-0.00022837	514.3163656249097	32.621	0.88702	32.463	32.079	32.966	-0.15772					64	21	4	0	0	0	0.03201	2	2254	2244;2254		139.97	44.155	1	2242000			36294	2259	24854	24906	41968;41969	41969					0.10633424605566688
KVLETKWTL	9	Unmodified	_KVLETKWTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.3343505859375	2	559.334424	1116.6543	0.42914	0.00024003	-1.1145	-0.0006234	-0.6854	-0.00038337	559.3338696494336	51.569	1.7591	51.45	51.082	52.842	-0.11875					139	45	4	0	0	0	0.013924	5	5314	5280;5290;5302;5314;5326		190.26	43.679	1	35084000		+	36295	503	24855	24907	41970;41971;41972;41973;41974	41973					0.10063462062566941
KVLETKWTL	9	Unmodified	_KVLETKWTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.3338012695312	2	559.334424	1116.6543	-1.6353	-0.00091469	0.78909	0.00044136	-0.84624	-0.00047333	559.3349397085439	51.834	2.1571	51.565	51.203	53.36	-0.26903					151	56	4	0	0	0	0.013337	5	5356	5309;5319;5331;5344;5356		180.87	57.702	1	39976000		+	36296	503	24855	24907	41975;41976;41977;41978;41979	41979					0.10063462062566941
KVLETKWTL	9	Unmodified	_KVLETKWTL_					0	0	0		KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.3342895507812	2	559.334424	1116.6543	0.63346	0.00035432	-1.531	-0.00085634	-0.89753	-0.00050202	559.3336135300999	51.635	2.3015	51.451	51.099	53.4	-0.18404					137	59	4	0	0	0	0.013065	4	5319	5284;5295;5307;5319		185.72	65.976	1	34775000		+	36297	503	24855	24907	41980;41981;41982;41983	41983					0.10063462062566941
KVLETLVTV	9	Unmodified	_KVLETLVTV_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000551414.1_1_14:31762513-31765297:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.3156433105469	2	501.3157	1000.61685	-0.099935	-5.0099E-05	-0.36654	-0.00018375	-0.46647	-0.00023385	501.3154273374625	60.396	0.87232	60.199	59.947	60.819	-0.19742					54	21	4	0	0	0	0.041068	2	6719	6709;6719		132.76	20.347	1	3648100			36298	4352	24856	24908	41984;41985	41985					0.11656370796958981
KVLETLVTV	9	Unmodified	_KVLETLVTV_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000551414.1_1_14:31762513-31765297:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3158264160156	2	501.3157	1000.61685	-0.66841	-0.00033509	0.093159	4.6702E-05	-0.57526	-0.00028838	501.31564040693235	60.35	0.95158	60.174	59.922	60.874	-0.1761					59	23	4	0	0	0	0.025498	1	6708	6708		145.16	43.903	1	4195100			36299	4352	24856	24908	41986	41986					0.11656370796958981
KVLETLVTV	9	Unmodified	_KVLETLVTV_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000551414.1_1_14:31762513-31765297:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3153991699219	2	501.3157	1000.61685	-0.84722	-0.00042472	0.13053	6.5435E-05	-0.71669	-0.00035929	501.31566206288034	60.486	1.0354	60.232	59.977	61.012	-0.25373					62	25	4	0	0	0	0.14181	2	6720	6709;6720		101.25	13.076	1	3858500			36300	4352	24856	24908	41987;41988	41988					0.11656370796958981
KVLFILFR	8	Unmodified	_KVLFILFR_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2977294921875	2	518.339313	1034.66407	-0.78552	-0.00040716	2.5324	0.0013127	1.7469	0.00090549	518.3403585907423	102.69	0.52847	102.69	102.39	102.92	0					19	12	3	0	0	0	0.027866	1	13152	13152		47.916	21.119	1	103310			36301	7729	24857	24909	41989	41989					0.14812694858596842
KVLFWQDL	8	Unmodified	_KVLFWQDL_					0	0	0		ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7921752929688	2	524.794935	1047.57532	-0.56852	-0.00029836	-4.2425	-0.0022264	-4.811	-0.0025248	524.7927312780023	61.166	1.1639	61.166	60.845	62.009	0					96	30	5	0	0	0	0.53523	1	7064	7064		82.305	10.927	1	7369500			36302	6926	24858	24910	41990	41990					0.05343234828274035
KVLGDLLSV	9	Unmodified	_KVLGDLLSV_					0	0	0		ENSG00000273540|ENST00000614907|AGBL1;nc|ENSG00000273540|Q96MI9|AGBL1;AGBL1|p.G39D|1|0.3|ENSG00000273540|chr15:86143837-86143837|G/A|missense_variant	ENSG00000273540|ENST00000614907|AGBL1	ENSG00000273540|ENST00000614907|AGBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2634582519531	2	472.294768	942.574983	-0.14523	-6.8593E-05	-0.3923	-0.00018528	-0.53754	-0.00025388	472.2944368467463	62.917	0.58406	62.917	62.612	63.196	0					26	14	2	0	0	0	0.024367	1	7313	7313		52.937	17.318	1	1567200			36303	11020	24859	24911	41991	41991					0.1013981510842541
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.30218505859375	2	442.302396	882.590239	0.28322	0.00012527	-0.17774	-7.8616E-05	0.10548	4.6654E-05	442.30217611376924	63.822	1.1636	63.571	63.264	64.428	-0.25141					80	31	4	0	0	0	0.15889	1	7453	7453		97.473	41.968	1	3785000			36304	4087	24860	24912	41992	41992					0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.3026123046875	2	442.302396	882.590239	1.7257	0.00076327	-1.492	-0.00065993	0.23365	0.00010334	442.3015881796114	63.523	1.3488	63.577	63.302	64.651	0.054104					80	36	4	0	0	0	0.22754	1	7358	7358		85.359	35.335	1	2949400			36305	4087	24860	24912	41993	41993					0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.302396	882.590239	0.98572	0.00043599	-0.77511	-0.00034283	0.21062	9.3157E-05	442.3019119427579	63.542	1.3135	63.542	63.265	64.578	0	-0.041922	-0.00033863	NaN	97.473	75	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2593900			36306	4087	24860	24912							0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.302396	882.590239	-0.32424	-0.00014341	0.4966	0.00021965	0.17236	7.6236E-05	442.3024816153857	63.84	1.0113	63.612	63.291	64.302	-0.22773	0.027924	0.00078632	NaN	97.473	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529610			36307	4087	24860	24912							0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.302396	882.590239	-0.12895	-5.7034E-05	0.27535	0.00012179	0.1464	6.4752E-05	442.3023883352734	63.818	0.89165	63.625	63.302	64.194	-0.19243	0.041065	0.0005906	NaN	97.473	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662140			36308	4087	24860	24912							0.14424726696279322
KVLGIVVGV	9	Unmodified	_KVLGIVVGV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.302396	882.590239	0.4604	0.00020364	-0.37885	-0.00016756	0.081552	3.6071E-05	442.3020578807763	63.836	0.95344	63.578	63.313	64.267	-0.25824	-0.0061126	1.1898E-05	NaN	97.473	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432950			36309	4087	24860	24912							0.14424726696279322
KVLGTEELY	9	Unmodified	_KVLGTEELY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2884521484375	2	526.28714	1050.55973	0.46375	0.00024406	0.19362	0.0001019	0.65736	0.00034596	526.2870470898349	68.382	1.1783	68.152	67.875	69.054	-0.23048					72	28	4	0	0	0	0.4752	1	7895	7895		60.972	0.85368	1	1870300			36310	1435	24861	24913	41994	41994					0.03646903520575506
KVLGTVKWF	9	Unmodified	_KVLGTVKWF_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;nc|ENSG00000060138|P16989-2|YBX3;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;ENSG00000065978|ENST00000321358|YBX1	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7762451171875	2	539.326402	1076.63825	-0.19599	-0.0001057	-0.13881	-7.4865E-05	-0.3348	-0.00018057	539.3262063896191	57.589	0.6382	57.399	57.112	57.75	-0.19018					36	16	3	0	0	0	0.024447	1	6277	6277		25.574	1.3713	1	1050400			36311	1230	24862	24914	41995	41995					0.10299800616326138
KVLIKVLD	8	Unmodified	_KVLIKVLD_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L588Rfs*12|1|0.28|ENSG00000113555|chr5:141956078-141956091|TGGGCACCAGCAGG/-|frameshift_variant;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1	ENSG00000113555|ENST00000231484|PCDH12;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.78692626953125	2	464.315503	926.616454	0.67427	0.00031307	-0.89111	-0.00041376	-0.21685	-0.00010069	464.3148822784811	70.771	0.54308	70.771	70.483	71.026	0					24	12	3	0	0	0	0.027866	1	8579	8579		88.643	0	1	312200			36312	3302;10395	24863	24915	41996	41996					0.1502099586773511
KVLIPPTW	8	Unmodified	_KVLIPPTW_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7904052734375	2	477.294571	952.574589	-0.92026	-0.00043924	-3.2014	-0.001528	-4.1217	-0.0019673	477.29271226204395	29.835	0.53413	29.913	29.724	30.258	0.078344					17	12	2	0	0	0	0.027866	1	1850	1850		19.36	0	1	235100			36313	7116	24864	24916	41997	41997					0.09640440179214238
KVLKAAEV	8	Unmodified	_KVLKAAEV_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.2633972167969	2	429.276378	856.538203	0.19775	8.489E-05	0.42249	0.00018137	0.62024	0.00026626	429.2760182370131	41.816	0.65797	41.586	41.274	41.932	-0.23029					29	17	3	0	0	0	0.027866	1	3720	3720		31.955	0	1	170000			36314	5106	24865	24917	41998	41998					0.10419563282505351
KVLKDEVI	8	Unmodified	_KVLKDEVI_					0	0	0			REV__ENSG00000182890|ENST00000328078|GLUD2	REV__ENSG00000182890|ENST00000328078|GLUD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2950744628906	2	472.294768	942.574983	0.19548	9.2324E-05	-0.30112	-0.00014222	-0.10564	-4.9893E-05	472.29456751299625	34.314	1.6062	34.09	33.803	35.409	-0.22412					97	40	4	0	0	0	0.50239	3	2502	2502;2524;2550		85.359	0	1	14155000	+		36315	27516	24866	24918	41999;42000;42001	41999					0.10139815108414041
KVLKDEVI	8	Unmodified	_KVLKDEVI_					0	0	0			REV__ENSG00000182890|ENST00000328078|GLUD2	REV__ENSG00000182890|ENST00000328078|GLUD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.294677734375	2	472.294768	942.574983	-1.0284	-0.00048569	0.53545	0.00025289	-0.4929	-0.0002328	472.2950047208876	34.285	1.1409	34.11	33.781	34.922	-0.17557					78	28	5	0	0	0	0.81662	1	2499	2499		57.811	0	1	11889000	+		36316	27516	24866	24918	42002	42002					0.10139815108414041
KVLKGKKG	8	Unmodified	_KVLKGKKG_					0	0	0		ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.26611328125	2	429.300188	856.585822	2.3947	0.001028	-2.1486	-0.00092239	0.24612	0.00010566	429.2989798689717	24.319	0.47964	24.139	23.938	24.418	-0.18089					20	10	3	0	0	0	0.027866	1	1000	1000		12.207	5.0135	1	121290			36317	16210	24867	24919	42003	42003					0.15179262273375116
KVLKKIGAY	9	Unmodified	_KVLKKIGAY_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.28759765625	2	510.334227	1018.6539	-0.020503	-1.0464E-05	0.32233	0.0001645	0.30183	0.00015403	510.3342822219613	71.344	2.0116	71.355	70.725	72.737	0.010742					84	51	3	0	0	0	0.024535	1	8613	8613		12.207	1.3413	1	262720			36318	9292	24868	24920	42004	42004					0.14532087133363802
KVLKNHSL	8	Unmodified	_KVLKNHSL_					0	0	0			REV__ENSG00000174125|ENST00000308979|TLR1	REV__ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2665710449219	2	469.792727	937.5709	-0.57341	-0.00026938	0.81817	0.00038437	0.24476	0.00011499	469.7926940326363	29.785	0.71628	29.613	29.113	29.829	-0.17258					26	16	2	0	0	0	0.027866	1	1839	1839		79.939	0	1	175790	+		36319	26834	24869	24921	42005	42005					0.09961770405368497
KVLKTLATPLE	11	Unmodified	_KVLKTLATPLE_					0	0	0			REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	REV__nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9228820800781	3	404.923585	1211.74892	0.50474	0.00020438	-3.0148	-0.0012208	-2.51	-0.0010164	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.044	1	1359	1359		26.75	5.064	1	35253000	+		36320	22191	24870	24922	42006	42006					0.15151975813887475
KVLLDSVVW	9	Unmodified	_KVLLDSVVW_					0	0	0		ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.8158569335938	2	529.815867	1057.61718	0.020601	1.0915E-05	0.36408	0.0001929	0.38468	0.00020381	529.8165947976862	68.333	0.72113	68.099	67.797	68.518	-0.23376					48	17	5	0	0	0	0.6504	1	7885	7885		49.442	5.3247	1	8218700			36321	11208	24871	24923	42007	42007					0.09067790516814966
KVLLDSVVW	9	Unmodified	_KVLLDSVVW_					0	0	0		ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8155517578125	2	529.815867	1057.61718	0.46938	0.00024868	-0.088493	-4.6885E-05	0.38088	0.0002018	529.8163194576168	68.315	0.80464	68.085	67.755	68.559	-0.23047					38	19	3	0	0	0	0.53979	1	7870	7870		56.721	1.9987	1	7904400			36322	11208	24871	24923	42008	42008					0.09067790516814966
KVLLHYAR	8	Unmodified	_KVLLHYAR_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2904357910156	2	500.308544	998.602535	0.63085	0.00031562	-3.856	-0.0019292	-3.2251	-0.0016136	500.3064857552387	88.489	0.13081	88.508	88.409	88.54	0.018555					4	2	2	0	0	0	0.027866	1	11065	11065		17.365	0	1	27685	+		36323	22316	24872	24924	42009	42009					0.10317763159309834
KVLLKAPTLD	10	Unmodified	_KVLLKAPTLD_					0	0	0			REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	REV__TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.7669067382812	2	549.350074	1096.6856	-0.056826	-3.1217E-05	-2.6929	-0.0014793	-2.7497	-0.0015106	549.3484986767686	31.824	0.67605	31.639	31.36	32.036	-0.18503					29	15	3	0	0	0	0.03519	1	2195	2195		5.9211	0	1	172850	+		36324	20104	24873	24925	42010	42010					0.14112035096650288
KVLLPPLW	8	Unmodified	_KVLLPPLW_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.76080322265625	2	483.312764	964.610974	-0.027592	-1.3335E-05	-0.6893	-0.00033315	-0.71689	-0.00034648	483.3123074893507	78.165	0.38425	77.903	77.735	78.119	-0.26202					12	8	2	0	0	0	0.027866	1	9292	9292		13.775	0	1	46981			36325	18258	24874	24926	42011	42011					0.1272531707594453
KVLMLRPE	8	Unmodified	_KVLMLRPE_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7980651855469	2	493.296788	984.579022	0.12571	6.2014E-05	-2.2586	-0.0011142	-2.1329	-0.0010522	493.29452888391603	52.095	1.0081	51.911	51.669	52.677	-0.18404					43	25	3	0	0	0	0.027866	1	5472	5472		16.473	3.514	1	859210			36326	6018	24875	24927	42012	42012					0.08611581330478657
KVLMNKRGRF	10	Unmodified	_KVLMNKRGRF_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.23907470703125	3	416.91677	1247.72848	0.17313	7.2181E-05	-0.37378	-0.00015583	-0.20065	-8.3653E-05	416.91671417907094	41.975	0.21701	41.745	41.544	41.761	-0.23029					7	5	2	0	0	0	0.03519	1	3730	3730		46.457	13.417	1	55031	+		36327	19892	24876	24928	42013	42013					0.1145252667308796
KVLNKLPTL	9	Unmodified	_KVLNKLPTL_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.26953125	2	513.33951	1024.66447	-0.52889	-0.0002715	-0.11897	-6.107E-05	-0.64785	-0.00033257	513.3393285236175	79.594	0.58647	79.594	79.283	79.87	0					16	13	2	0	0	0	0.02435	1	9912	9912		42.396	6.7778	1	99025	+		36328	25703	24877	24929	42014	42014					0.15312069787796645
KVLNLIQSW	9	Unmodified	_KVLNLIQSW_					0	0	0		ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-4|TOM1;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3024291992188	2	550.826766	1099.63898	-0.27424	-0.00015106	-0.087443	-4.8166E-05	-0.36169	-0.00019923	550.8264440557568	70.359	0.57445	70.087	69.658	70.232	-0.27184					21	13	3	0	0	0	0.022657	1	8184	8184		87.696	24.39	1	510600			36329	14042	24878	24930	42015	42015					0.09314595265368553
KVLNLIQSW	9	Unmodified	_KVLNLIQSW_					0	0	0		ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-4|TOM1;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.302001953125	2	550.826766	1099.63898	-0.051364	-2.8293E-05	-0.38002	-0.00020933	-0.43139	-0.00023762	550.8263059459299	70.306	0.65778	70.054	69.522	70.18	-0.25267					21	15	2	0	0	0	0.023093	1	8185	8185		54.722	8.7704	1	576940			36330	14042	24878	24930	42016	42016					0.09314595265368553
KVLNLIQSW	9	Unmodified	_KVLNLIQSW_					0	0	0		ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-4|TOM1;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3016357421875	2	550.826766	1099.63898	0.12568	6.9229E-05	-1.8934	-0.0010429	-1.7677	-0.00097369	550.8264415108093	70.205	0.56848	69.991	69.605	70.174	-0.21425					40	13	5	0	0	0	0.01736	1	8165	8165		98.582	47.054	1	603490			36331	14042	24878	24930	42017	42017					0.09314595265368553
KVLNRKGTAE	10	Unmodified	_KVLNRKGTAE_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.5918579101562	2	558.330205	1114.64586	-0.43352	-0.00024205	0.12466	6.9603E-05	-0.30886	-0.00017245	558.3301681156939	41.997	0.64725	41.765	41.508	42.155	-0.23186					44	17	4	0	0	0	0.03519	1	3798	3798		23.523	12.012	1	1049700			36332	9358	24879	24931	42018	42018					0.09311908145923553
KVLNRKGTAE	10	Unmodified	_KVLNRKGTAE_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.330205	1114.64586	-0.19647	-0.00010969	0.03988	2.2266E-05	-0.15659	-8.7427E-05	558.3300836261726	41.777	0.61349	41.654	41.385	41.998	-0.12299	-0.08649	-3.3103E-05	NaN	23.523	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970730			36333	9358	24879	24931							0.09311908145923553
KVLNRKGTAE	10	Unmodified	_KVLNRKGTAE_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.330205	1114.64586	-0.31065	-0.00017345	0.0076858	4.2912E-06	-0.30297	-0.00016916	558.3300888773687	42.033	0.59261	41.802	41.508	42.101	-0.23029	0.061865	-6.9053E-05	NaN	23.523	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1214500			36334	9358	24879	24931							0.09311908145923553
KVLPIPVLSDN	11	Unmodified	_KVLPIPVLSDN_					0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD;nc|ENSG00000127838|Q8N490-4|PNKD;ENSG00000127838|ENST00000273077|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8562622070312	2	597.858264	1193.70197	-1.6739	-0.0010008	-1.798	-0.001075	-3.4719	-0.0020757	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.0238	1	11728	11728		31.53	4.8369	1	4454900			36335	18252	24880	24932	42019	42019					0.11287116262769814
KVLPIPVLSDN	11	Unmodified	_KVLPIPVLSDN_					0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD;nc|ENSG00000127838|Q8N490-4|PNKD;ENSG00000127838|ENST00000273077|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8557739257812	2	597.858264	1193.70197	-1.8915	-0.0011309	-1.6048	-0.00095944	-3.4963	-0.0020903	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0392	1	11331	11331		28.081	1.0342	1	5655800			36336	18252	24880	24932	42020	42020					0.11287116262769814
KVLPRIHDV	9	Unmodified	_KVLPRIHDV_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.863037109375	2	538.832383	1075.65021	-0.88675	-0.00047781	4.0388	0.0021762	3.1521	0.0016984	539.3359901684904	80.268	0.21031	80.268	80.12	80.331	0					6	4	2	0	0	0	0.024457	1	9968	9968		21.96	0	1	39556			36337	5204	24881	24933	42021	42021					0.1154141735948997
KVLPTEDL	8	Unmodified	_KVLPTEDL_					0	0	0		ENST00000599078.1_1_19:21666745-21672546:+|nuORF	ENST00000599078.1_1_19:21666745-21672546:+|nuORF	ENST00000599078.1_1_19:21666745-21672546:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.23553466796875	2	457.7633	913.512048	-0.40061	-0.00018338	-2.5606	-0.0011722	-2.9613	-0.0013556	457.7621448460387	22.017	0.81065	21.826	21.42	22.23	-0.19072					29	16	3	0	0	0	0.027866	1	779	779		40.573	1.7665	1	164760			36338	17485	24882	24934	42022	42022					0.05183249320361938
KVLPTEDL	8	Unmodified	_KVLPTEDL_					0	0	0		ENST00000599078.1_1_19:21666745-21672546:+|nuORF	ENST00000599078.1_1_19:21666745-21672546:+|nuORF	ENST00000599078.1_1_19:21666745-21672546:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.7633	913.512048	-0.45992	-0.00021053	-1.1832	-0.00054163	-1.6431	-0.00075217	457.76226527330203	21.964	0.53114	21.762	21.566	22.097	-0.20199	-0.032141	0.0011217	NaN	40.573	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45197			36339	17485	24882	24934							0.05183249320361938
KVLQANPGSV	10	Unmodified	_KVLQANPGSV_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7455749511719	2	506.792924	1011.57129	0.73744	0.00037373	0.24678	0.00012507	0.98422	0.0004988	506.7932569990029	82.223	2.1592	82.113	81.765	83.924	-0.11006					38	22	3	0	0	0	0.03519	1	10219	10219		72.879	17.375	1	226820	+		36340	26560	24883	24935	42023	42023					0.06597145334569632
KVLQKYWC	8	Unmodified	_KVLQKYWC_					0	0	0		ENST00000515319.6_1_X:2405587-2406978:-|nuORF;ENSG00000214717|ENST00000652001|ZBED1	ENST00000515319.6_1_X:2405587-2406978:-|nuORF	ENST00000515319.6_1_X:2405587-2406978:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.288330078125	2	534.288963	1066.56337	2.4799	0.001325	-2.9062	-0.0015528	-0.42635	-0.00022779	534.2873389735579	18.161	0.73414	18.161	17.94	18.674	0					32	14	4	0	0	0	0.91239	1	264	264		50.025	5.4935	1	305800			36341	10566	24884	24936	42024	42024					0.03275294813442997
KVLQKYWC	8	Unmodified	_KVLQKYWC_					0	0	0		ENST00000515319.6_1_X:2405587-2406978:-|nuORF;ENSG00000214717|ENST00000652001|ZBED1	ENST00000515319.6_1_X:2405587-2406978:-|nuORF	ENST00000515319.6_1_X:2405587-2406978:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2887573242188	2	534.288963	1066.56337	-0.18633	-9.9552E-05	-0.27551	-0.0001472	-0.46184	-0.00024675	534.288661320841	18.31	0.68816	18.179	17.957	18.645	-0.13147					29	13	3	0	0	0	0.91239	1	272	272		50.025	0.58299	1	291720			36342	10566	24884	24936	42025	42025					0.03275294813442997
KVLQMQLTVKV	11	Unmodified	_KVLQMQLTVKV_					0	0	0		ENST00000320985.14_1_10:31750007-31791278:+|nuORF	ENST00000320985.14_1_10:31750007-31791278:+|nuORF	ENST00000320985.14_1_10:31750007-31791278:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.18658447265625	3	429.600336	1285.77918	0.14953	6.4238E-05	2.6086	0.0011207	2.7581	0.0011849	429.6013993796915	24.622	0.47739	24.447	24.21	24.688	-0.17484					17	10	2	0	0	0	0.024735	1	1114	1114		11.932	0	1	145880			36343	12201	24885	24937	42026	42026					0.14772011207401192
KVLQMQLTVKV	11	Unmodified	_KVLQMQLTVKV_					0	0	0		ENST00000320985.14_1_10:31750007-31791278:+|nuORF	ENST00000320985.14_1_10:31750007-31791278:+|nuORF	ENST00000320985.14_1_10:31750007-31791278:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	429.600336	1285.77918	2.3289	0.0010005	0.63841	0.00027426	2.9673	0.0012747	429.6005731161272	24.721	0.5261	24.541	24.285	24.811	-0.18089	0.011663	-0.00195	NaN	11.932	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80740			36344	12201	24885	24937							0.14772011207401192
KVLRARND	8	Unmodified	_KVLRARND_					0	0	0		ENSG00000250565|ENST00000522587|ATP6V1E2	ENSG00000250565|ENST00000522587|ATP6V1E2	ENSG00000250565|ENST00000522587|ATP6V1E2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2814636230469	2	486.290882	970.567212	-0.53841	-0.00026183	3.9685	0.0019298	3.4301	0.001668	486.2927607794137	80.111	0.75563	80.111	79.911	80.667	0					20	17	2	0	0	0	0.027866	1	10012	10012		24.203	4.206	1	82613			36345	10850	24886	24938	42027	42027					0.08075100631504029
KVLRARND	8	Unmodified	_KVLRARND_					0	0	0		ENSG00000250565|ENST00000522587|ATP6V1E2	ENSG00000250565|ENST00000522587|ATP6V1E2	ENSG00000250565|ENST00000522587|ATP6V1E2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.290882	970.567212	0.27488	0.00013367	12.23	0.0059475	12.505	0.0060811	486.2972153754622	80.27	0.37566	80.063	79.757	80.132	-0.20633	0.027633	0.0058957	NaN	24.203	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223130			36346	10850	24886	24938							0.08075100631504029
KVLREGQAR	9	Unmodified	_KVLREGQAR_					0	0	0		ENSG00000100302|ENST00000216127|RASD2	ENSG00000100302|ENST00000216127|RASD2	ENSG00000100302|ENST00000216127|RASD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3215942382812	2	528.817264	1055.61998	0.47041	0.00024876	3.623	0.0019159	4.0934	0.0021647	528.8187812301243	70.314	1.4505	70.021	69.467	70.918	-0.29291					101	39	4	0	0	0	0.53979	1	8490	8490		56.721	7.2795	1	14037000			36347	2174	24887	24939	42028	42028					0.09439058694306368
KVLRVMTAG	9	Unmodified	_KVLRVMTAG_					0	0	0			REV__ENSG00000130385|ENST00000252677|BMP15	REV__ENSG00000130385|ENST00000252677|BMP15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.79534912109375	2	487.794412	973.574271	-0.52067	-0.00025398	-0.25169	-0.00012277	-0.77236	-0.00037675	487.7935049090261	37.03	0.43176	36.81	36.567	36.999	-0.2195					16	10	2	0	0	0	0.024436	1	2911	2911		23.042	0	1	78688	+		36348	23110	24888	24940	42029	42029					0.08642697187735848
KVLSDKLGE	9	Unmodified	_KVLSDKLGE_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.78271484375	2	494.787307	987.560061	0.38939	0.00019266	-2.3259	-0.0011508	-1.9365	-0.00095817	494.78527947553744	32.667	0.95605	32.475	32.029	32.985	-0.19261					52	22	4	0	0	0	0.48817	1	2305	2305		60.118	0	1	2605500	+		36349	29071	24889	24941	42030	42030					0.06578323240421469
KVLSLIINI	9	Unmodified	_KVLSLIINI_					0	0	0			REV__ENST00000465643.1_1_7:40132349-40134576:+|nuORF	REV__ENST00000465643.1_1_7:40132349-40134576:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2770080566406	2	506.841885	1011.66922	0.57826	0.00029309	-4.0352	-0.0020452	-3.457	-0.0017521	506.8391667509272	54.828	0.47132	54.622	54.395	54.866	-0.20613					16	12	2	0	0	0	0.024466	1	5843	5843		39.253	12.56	1	76788	+		36350	33011	24890	24942	42031	42031					0.16384953930560187
KVLSMVKQS	9	Unmodified	_KVLSMVKQS_					0	0	0		ENST00000590497.5_1_18:44266209-44301398:-|nuORF;ENST00000588155.1_1_18:44272124-44336471:-|nuORF;ENSG00000101638|ENST00000315087|ST8SIA5;nc|ENSG00000101638|O15466-2|ST8SIA5	ENST00000590497.5_1_18:44266209-44301398:-|nuORF	ENST00000590497.5_1_18:44266209-44301398:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2810363769531	2	510.299527	1018.5845	0.18071	9.2219E-05	-3.3914	-0.0017306	-3.2107	-0.0016384	510.2974961348448	61.544	0.96679	61.317	61.082	62.049	-0.22663					38	25	2	0	0	0	0.024359	1	7110	7110		56.434	27.284	1	1521900			36351	2341	24891	24943	42032	42032					0.07595260122309355
KVLSPLSRS	9	Unmodified	_KVLSPLSRS_					0	0	0			REV__ENSG00000127241|ENST00000296280|MASP1	REV__ENSG00000127241|ENST00000296280|MASP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.8031921386719	2	493.803291	985.59203	-0.091808	-4.5335E-05	-0.02367	-1.1688E-05	-0.11548	-5.7023E-05	493.80319864929896	23.332	0.83235	23.13	22.78	23.612	-0.20193					49	18	4	0	0	0	0.6238	1	905	905		51.193	5.2204	1	2039900	+		36352	22922	24892	24944	42033	42033					0.09865735714242874
KVLSVNYTAI	10	Unmodified	_KVLSVNYTAI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.E1711Q|1|0.19|ENSG00000205038|chr8:109445000-109445000|G/C|missense_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3237915039062	2	554.324057	1106.63356	-0.28548	-0.00015825	0.21924	0.00012153	-0.066236	-3.6716E-05	554.3241246965927	50.571	1.0114	50.571	50.274	51.286	0					67	28	4	0	0	0	0.55353	1	5309	5309		82.241	4.9229	1	3170800			36353	10401	24893	24945	42034	42034					0.08450871682885008
KVLTALSH	8	Unmodified	_KVLTALSH_					0	0	0		nc|ENSG00000095370|Q8N5H7-3|SH2D3C;nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801818847656	2	434.766178	867.517802	-0.46776	-0.00020337	3.1275	0.0013597	2.6598	0.0011564	434.76721299194776	39.478	0.49984	39.502	39.242	39.741	0.023727					18	13	2	0	0	0	0.027866	1	3319	3319		3.9852	0	1	102900			36354	2023	24894	24946	42035	42035					0.07874392622716186
KVLTINFSSV	10	Unmodified	_KVLTINFSSV_					0	0	0			REV__ENST00000335420.9_1_7:129772789-129772981:+|nuORF	REV__ENST00000335420.9_1_7:129772789-129772981:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3243408203125	2	554.324057	1106.63356	0.23481	0.00013016	0.31971	0.00017722	0.55451	0.00030738	554.3239941800263	50.782	0.6665	50.505	50.224	50.891	-0.27643					55	17	4	0	0	0	0.50517	1	5187	5187		87.696	10.922	1	3769300	+		36355	30531	24895	24947	42036	42036					0.08450871682885008
KVLTKGANAR	10	Unmodified	_KVLTKGANAR_					0	0	0			REV__nc|ENSG00000066855|Q15390-2|MTFR1	REV__nc|ENSG00000066855|Q15390-2|MTFR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.3070068359375	2	529.327465	1056.64038	-0.34155	-0.00018079	-4.4635	-0.0023627	-4.8051	-0.0025435	529.3236267932155	64.294	0.51141	64.102	63.84	64.351	-0.19244					22	12	3	0	0	0	0.03519	1	7272	7272		42.864	5.7052	1	181730	+		36356	20347	24896	24948	42037	42037					0.11432229354113588
KVLTPEEL	8	Unmodified	_KVLTPEEL_					0	0	0		ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000470518.5_1_22:40803281-40805023:+|nuORF;ENST00000478085.5_1_22:40803992-40804918:+|nuORF	ENSG00000100359|ENST00000248929|SGSM3	ENSG00000100359|ENST00000248929|SGSM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.29620361328125	2	464.771126	927.527698	-1.2292	-0.00057129	-3.1092	-0.001445	-4.3384	-0.0020163	464.76986600095074	65.558	0.16414	65.344	65.215	65.379	-0.21327					5	3	2	0	0	0	0.027866	1	7482	7482		63.306	17.354	1	62885			36357	2190	24897	24949	42038	42038					0.061035358374169846
KVLVDMSRV	9	Unmodified	_KVLVDMSRV_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;ENST00000551620.5_1_12:69979244-69983508:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2;ENST00000546859.5_1_12:69979244-69981900:+|nuORF;ENST00000550638.5_1_12:69979244-69982049:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.7921752929688	2	523.804977	1045.5954	0.023232	1.2169E-05	-3.9873	-0.0020886	-3.9641	-0.0020764	523.8029990973812	61.147	1.1733	61.218	60.677	61.85	0.071129					57	30	4	0	0	0	0.020937	1	6969	6969		98.629	27.334	1	3821600			36358	7527	24898	24950	42039	42039					0.07442662496578123
KVLVKPVKT	9	Unmodified	_KVLVKPVKT_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2797546386719	2	506.349877	1010.6852	-0.70869	-0.00035884	-0.30753	-0.00015572	-1.0162	-0.00051456	506.34949396683544	50.073	0.7998	50.073	49.842	50.642	0					42	23	3	0	0	0	0.024511	1	5219	5219		25.574	3.6142	1	434210	+		36359	25067	24899	24951	42040	42040					0.18028660167453836
KVLVLPILS	9	Unmodified	_KVLVLPILS_					0	0	0			REV__ENST00000414006.1_1_10:97664652-97667478:-|nuORF	REV__ENST00000414006.1_1_10:97664652-97667478:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.28759765625	2	491.338978	980.663404	0.10187	5.0055E-05	-0.95386	-0.00046867	-0.85199	-0.00041862	491.3383456245217	75.443	0.9988	75.454	75.051	76.05	0.010376					58	26	3	0	0	0	0.024436	1	9271	9271		23.042	0	1	1180000	+		36360	32028	24900	24952	42041	42041					0.17229855418895568
KVLVMLAAQ	9	Unmodified	_KVLVMLAAQ_					0	0	0		ENSG00000136270|ENST00000258770|TBRG4;ENST00000484326.1_1_7:45143607-45145060:-|nuORF;ENST00000488222.5_1_7:45142883-45145249:-|nuORF	ENSG00000136270|ENST00000258770|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7782897949219	2	486.799163	971.583773	-0.63362	-0.00030845	-3.733	-0.0018172	-4.3667	-0.0021257	486.7971385315074	56.753	0.10602	56.589	56.535	56.641	-0.16431					4	2	2	0	0	0	0.024405	1	6319	6319		53.351	9.2347	1	119940			36361	5003	24901	24953	42042	42042					0.09684465473253567
KVLVQHEV	8	Unmodified	_KVLVQHEV_					0	0	0			REV__nc|ENSG00000227500|Q969E2-3|SCAMP4	REV__nc|ENSG00000227500|Q969E2-3|SCAMP4	MSMS	OPSCC_40_ClassI_Rep-1	4	476.28662109375	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.03	1	101.9	101.4	102.4	-0.12931								0	0	0	0.96059	1	12665	12665		23.042	0	1		+		36362	28884	24902	24954	42043	42043					0.07766064168470166
KVLVSGVI	8	Unmodified	_KVLVSGVI_					0	0	0		ENST00000580790.1_1_10:75459274-75472997:-|nuORF	ENST00000580790.1_1_10:75459274-75472997:-|nuORF	ENST00000580790.1_1_10:75459274-75472997:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.5545654296875	2	407.773471	813.53239	0.31007	0.00012644	0.077328	3.1532E-05	0.3874	0.00015797	407.77331700037433	34.372	0.39832	34.165	33.968	34.366	-0.20696					13	9	2	0	0	0	0.027866	1	2525	2525		15.642	0	1	62347			36363	17153	24903	24955	42044	42044					0.11816464770845414
KVLVVEPVK	9	Unmodified	_KVLVVEPVK_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14;nc|ENSG00000146826|Q8WVR3-2|TRAPPC14;ENST00000448720.5_1_7:99752636-99754020:-|nuORF;nc|ENSG00000146826|Q8WVR3-3|TRAPPC14;ENST00000394035.6_2_7:99752636-99754020:-|nuORF;ENST00000470260.1_1_7:99752636-99753198:-|nuORF	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.26605224609375	2	505.83406	1009.65357	0.14021	7.0924E-05	-0.23948	-0.00012114	-0.099267	-5.0212E-05	505.833854148995	52.907	0.82136	52.78	52.432	53.253	-0.12705					46	20	3	0	0	0	0.024427	1	5518	5518		34.173	0	1	1016200			36364	5909	24904	24956	42045	42045					0.14912667413511826
KVLVYISEL	9	Unmodified	_KVLVYISEL_					0	0	0			REV__ENST00000394818.7_1_11:61919848-61920211:+|nuORF	REV__ENST00000394818.7_1_11:61919848-61920211:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2862548828125	2	532.323525	1062.6325	-0.44202	-0.0002353	0.77011	0.00040995	0.32809	0.00017465	532.3236126343664	71.2	0.86871	70.943	70.695	71.564	-0.25713					37	20	3	0	0	0	0.024292	1	8397	8397		25.574	12.12	1	374400	+		36365	31678	24905	24957	42046	42046					0.10368657313983931
KVLVYISEL	9	Unmodified	_KVLVYISEL_					0	0	0			REV__ENST00000394818.7_1_11:61919848-61920211:+|nuORF	REV__ENST00000394818.7_1_11:61919848-61920211:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.323525	1062.6325	-0.011474	-6.1079E-06	-0.1933	-0.0001029	-0.20477	-0.000109	532.3231846090371	71.296	0.69024	71.021	70.744	71.434	-0.27415	0.014872	-8.0269E-05	NaN	25.574	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403100	+		36366	31678	24905	24957							0.10368657313983931
KVLVYISEL	9	Unmodified	_KVLVYISEL_					0	0	0			REV__ENST00000394818.7_1_11:61919848-61920211:+|nuORF	REV__ENST00000394818.7_1_11:61919848-61920211:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.323525	1062.6325	0.4583	0.00024396	-0.50293	-0.00026772	-0.044636	-2.3761E-05	532.3230693585639	71.131	0.71719	70.921	70.699	71.417	-0.20952	-0.085438	-0.00040992	NaN	25.574	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435710	+		36367	31678	24905	24957							0.10368657313983931
KVLVYSQAI	9	Unmodified	_KVLVYSQAI_					0	0	0			REV__ENST00000586859.1_1_17:74039843-74041464:-|nuORF	REV__ENST00000586859.1_1_17:74039843-74041464:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.78948974609375	2	510.808042	1019.60153	0.14977	7.6502E-05	-2.9258	-0.0014945	-2.7761	-0.001418	510.8068969700094	85.824	1.5432	85.629	85.427	86.97	-0.19508					68	35	3	0	0	0	0.024457	1	10393	10393		45.952	20.502	1	311390	+		36368	35609	24906	24958	42047	42047					0.09251503999746546
KVMDEVEKA	9	Oxidation (M)	_KVM(Oxidation (M))DEVEKA_		KVM(1)DEVEKA		KVM(99)DEVEKA	0	0	1		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.768310546875	2	532.768257	1063.52196	-0.95019	-0.00050623	0.77174	0.00041116	-0.17846	-9.5075E-05	532.7685515684601	23.362	0.52876	23.362	23.165	23.694	0					33	12	3	0	0	0	0.15193	1	909	909		99.013	31.519	1	665430			36369	18459	24907	24959	42048	42048		580			-0.007259307365302448
KVMDEVEKA	9	Oxidation (M)	_KVM(Oxidation (M))DEVEKA_		KVM(1)DEVEKA		KVM(71)DEVEKA	0	0	1		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7681884765625	2	532.768257	1063.52196	-1.1047	-0.00058856	1.0308	0.00054918	-0.073913	-3.9379E-05	532.7686632130415	24.851	3.2578	24.851	23.651	26.908	0					161	76	3	0	0	0	0.33603	1	1117	1117		70.816	14.095	1	674650			36370	18459	24907	24959	42049	42049		580			-0.007259307365302448
KVMDEVEKA	9	Oxidation (M)	_KVM(Oxidation (M))DEVEKA_		KVM(1)DEVEKA		KVM(85)DEVEKA	0	0	1		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7684936523438	2	532.768257	1063.52196	-0.75155	-0.0004004	0.32432	0.00017279	-0.42723	-0.00022762	532.7683677973389	23.019	0.40272	22.958	22.709	23.111	-0.060862					15	8	2	0	0	0	0.22902	1	857	857		85.161	19.358	1	610310			36371	18459	24907	24959	42050	42050		580			-0.007259307365302448
KVMDEVEKA	9	Oxidation (M)	_KVM(Oxidation (M))DEVEKA_		KVM(1)DEVEKA		KVM(110)DEVEKA	0	0	1		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7684326171875	2	532.768257	1063.52196	-1.384	-0.00073736	1.3855	0.00073814	0.0014619	7.7883E-07	532.7688297081583	24.976	3.0959	24.942	23.669	26.765	-0.034395					157	72	3	0	0	0	0.11727	1	1121	1121		106.68	44.576	1	623610			36372	18459	24907	24959	42051	42051		580			-0.007259307365302448
KVMDEVEKA	9	Oxidation (M)	_KVM(Oxidation (M))DEVEKA_		KVM(1)DEVEKA		KVM(130)DEVEKA	0	0	1		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.767822265625	2	532.768257	1063.52196	-0.82854	-0.00044142	0.59627	0.00031767	-0.23227	-0.00012374	532.7683513976224	23.2	0.66717	23.276	22.98	23.647	0.076239					38	15	4	0	0	0	0.058169	1	848	848		125.71	46	1	673630			36373	18459	24907	24959	42052	42052		580			-0.007259307365302448
KVMDEVEKA	9	Oxidation (M)	_KVM(Oxidation (M))DEVEKA_		KVM(1)DEVEKA		KVM(130)DEVEKA	0	0	1		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7684326171875	2	532.768257	1063.52196	-0.11457	-6.1041E-05	0.092779	4.943E-05	-0.021794	-1.1611E-05	532.7681532174787	24.904	2.6044	24.982	23.563	26.168	0.078344					146	59	3	0	0	0	0.048057	3	1075	1052;1062;1075		129.42	66.115	1	725170			36374	18459	24907	24959	42053;42054;42055	42055		580			-0.007259307365302448
KVMDEVEKA	9	Unmodified	_KVMDEVEKA_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7704467773438	2	524.7708	1047.52705	-1.7643	-0.00092585	1.1526	0.00060483	-0.61174	-0.00032102	524.7713513514793	30.696	1.3322	30.696	30.258	31.591	0					75	31	5	0	0	0	0.013442	4	1997	1976;1985;1997;2011		182.39	69.648	1	5650700			36375	18459	24907	24960	42056;42057;42058;42059	42058					0.005183731260785862
KVMDEVEKA	9	Unmodified	_KVMDEVEKA_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7706909179688	2	524.7708	1047.52705	-0.66963	-0.0003514	0.13619	7.147E-05	-0.53344	-0.00027993	524.770835514257	30.633	1.0485	30.642	30.289	31.337	0.0086689					59	24	4	0	0	0	0.012962	4	1963	1952;1963;1975;1990		209.21	95.799	1	6458200			36376	18459	24907	24960	42060;42061;42062;42063	42061					0.005183731260785862
KVMDEVEKA	9	Unmodified	_KVMDEVEKA_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7705078125	2	524.7708	1047.52705	-0.73463	-0.00038551	0.1887	9.9022E-05	-0.54593	-0.00028649	524.7708453675907	30.328	1.2094	30.403	29.962	31.171	0.074314					71	28	5	0	0	0	0.014381	3	1879	1879;1889;1901		223.32	102.45	1	5869300			36377	18459	24907	24960	42064;42065;42066	42064					0.005183731260785862
KVMDEVEKA	9	Unmodified	_KVMDEVEKA_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.7708	1047.52705	-0.6213	-0.00032604	0.321	0.00016845	-0.3003	-0.00015759	524.7707952605406	30.765	0.54749	30.521	30.284	30.831	-0.24384	-0.034055	-1.2503E-05	NaN	182.39	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485970			36378	18459	24907	24960							0.005183731260785862
KVMDEVEKA	9	Unmodified	_KVMDEVEKA_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.7708	1047.52705	-0.61268	-0.00032151	0.1912	0.00010033	-0.42148	-0.00022118	524.7707878239908	30.684	0.50756	30.506	30.283	30.791	-0.17818	-0.04903	-0.00014873	NaN	182.39	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573830			36379	18459	24907	24960							0.005183731260785862
KVMDEVEKA	9	Unmodified	_KVMDEVEKA_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2	nc|ENSG00000164898|Q96HJ9-2|FMC1	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.7708	1047.52705	-0.046056	-2.4169E-05	-0.17832	-9.3575E-05	-0.22437	-0.00011774	524.7705879751004	30.711	0.54745	30.562	30.301	30.849	-0.14952	0.0070398	-0.00053655	NaN	182.39	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477420			36380	18459	24907	24960							0.005183731260785862
KVMFKELP	8	Unmodified	_KVMFKELP_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.779296875	2	496.285889	990.557224	-0.29137	-0.0001446	1.279	0.00063476	0.98764	0.00049015	496.28889542956057	51.097	0.57185	50.948	50.689	51.261	-0.14916					20	15	2	0	0	0	0.027866	1	5416	5416		44.117	0	1	165930	+		36381	28150	24908	24961	42067	42067					0.06156776581917711
KVMKAQQV	8	Unmodified	_KVMKAQQV_					0	0	0		nc|ENSG00000104442|Q9NVT9-2|ARMC1;ENSG00000104442|ENST00000276569|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.2728576660156	2	466.273312	930.532072	-1.2657	-0.00059017	0.52956	0.00024692	-0.73615	-0.00034325	466.2733890026497	20.55	0.77319	20.55	20.225	20.998	0					30	15	3	0	0	0	0.50239	1	553	553		85.359	16.573	1	234170			36382	2573	24909	24962	42068	42068					0.06402721779340936
KVMKAQQV	8	Unmodified	_KVMKAQQV_					0	0	0		nc|ENSG00000104442|Q9NVT9-2|ARMC1;ENSG00000104442|ENST00000276569|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.2728271484375	2	466.273312	930.532072	-0.29974	-0.00013976	-0.44802	-0.0002089	-0.74776	-0.00034866	466.27289306891055	20.743	0.96535	20.638	20.129	21.094	-0.10477					41	19	5	0	0	0	0.27193	1	574	574		123.99	35.346	1	337860			36383	2573	24909	24962	42069	42069					0.06402721779340936
KVMKPKLQT	9	Unmodified	_KVMKPKLQT_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.258544921875	2	536.830995	1071.64744	-1.0884	-0.00058426	-2.9192	-0.0015671	-4.0075	-0.0021514	536.8292294052665	53.187	0.46435	53.283	53.054	53.518	0.095669					21	12	2	0	0	0	0.0245	1	5687	5687		22.58	5.8623	1	201830	+		36384	23007	24910	24963	42070	42070					0.11447825910317988
KVMLEERC	8	Unmodified	_KVMLEERC_					0	0	0			REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7894287109375	2	504.254262	1006.49397	-0.67661	-0.00034119	3.1362	0.0015814	2.4596	0.0012402	504.25556846739556	28.188	0.65572	27.943	27.506	28.162	-0.24524					20	15	2	0	0	0	0.027866	1	1649	1649		24.203	0	1	68522	+		36385	26215	24911	24964	42071	42071					-0.009015321976335144
KVMSNILGL	9	Unmodified	_KVMSNILGL_					0	0	0			REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	487.7909240722656	2	487.788795	973.563038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.45	1	86.263	85.763	86.763	-0.18696								0	0	0	0.55237	1	10486	10486		45.952	3.5558	1		+		36386	21108	24912	24965	42072	42072					0.0751987509358969
KVMTTRILS	9	Unmodified	_KVMTTRILS_					0	0	0		ENST00000561073.1_1_15:101116892-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.272216796875	2	524.812802	1047.61105	-0.87559	-0.00045952	-3.4284	-0.0017992	-4.3039	-0.0022588	524.8108443912284	39.084	0.55743	39.084	38.902	39.459	0					42	15	4	0	0	0	0.023837	1	3379	3379		74.255	15.473	1	1152300			36387	5416	24913	24966	42073	42073					0.08914949013615114
KVMTTRILS	9	Unmodified	_KVMTTRILS_					0	0	0		ENST00000561073.1_1_15:101116892-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.27197265625	2	524.812802	1047.61105	-0.85534	-0.00044889	-3.8242	-0.002007	-4.6795	-0.0024559	524.8106235662613	39.066	0.53176	38.967	38.737	39.269	-0.098755					35	14	4	0	0	0	0.023655	1	3350	3350		69.628	14.851	1	1378000			36388	5416	24913	24966	42074	42074					0.08914949013615114
KVMTTRILS	9	Unmodified	_KVMTTRILS_					0	0	0		ENST00000561073.1_1_15:101116892-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	ENST00000561073.1_1_15:101116892-101121059:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2719116210938	2	524.812802	1047.61105	-0.79056	-0.0004149	-3.3639	-0.0017654	-4.1545	-0.0021803	524.810939063554	39.269	0.53587	39.292	39.099	39.635	0.023727					38	14	4	0	0	0	0.024261	1	3348	3348		64.207	30.035	1	1214300			36389	5416	24913	24966	42075	42075					0.08914949013615114
KVMVAEALD	9	Unmodified	_KVMVAEALD_					0	0	0		ENST00000307241.5_1_12:94942028-94943309:+|nuORF;ENSG00000172340|ENST00000307227|SUCLG2;nc|ENSG00000172340|Q96I99-2|SUCLG2	ENST00000307241.5_1_12:94942028-94943309:+|nuORF	ENST00000307241.5_1_12:94942028-94943309:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2820129394531	2	488.26261	974.510668	-0.53346	-0.00026047	1.2115	0.00059154	0.67806	0.00033107	488.2630639079375	80.841	0.51151	80.841	80.626	81.138	0					23	12	2	0	0	0	0.024323	1	10034	10034		63.306	2.3343	1	392960			36390	8263	24914	24967	42076	42076					0.022392919599496963
KVMVAEALD	9	Unmodified	_KVMVAEALD_					0	0	0		ENST00000307241.5_1_12:94942028-94943309:+|nuORF;ENSG00000172340|ENST00000307227|SUCLG2;nc|ENSG00000172340|Q96I99-2|SUCLG2	ENST00000307241.5_1_12:94942028-94943309:+|nuORF	ENST00000307241.5_1_12:94942028-94943309:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2815856933594	2	488.26261	974.510668	-0.92014	-0.00044927	1.4117	0.0006893	0.4916	0.00024003	488.2632322849751	81.017	0.47542	80.886	80.619	81.094	-0.13075					21	11	2	0	0	0	0.024323	1	10011	10011		53.351	21.397	1	365430			36391	8263	24914	24967	42077	42077					0.022392919599496963
KVMVAEALD	9	Unmodified	_KVMVAEALD_					0	0	0		ENST00000307241.5_1_12:94942028-94943309:+|nuORF;ENSG00000172340|ENST00000307227|SUCLG2;nc|ENSG00000172340|Q96I99-2|SUCLG2	ENST00000307241.5_1_12:94942028-94943309:+|nuORF	ENST00000307241.5_1_12:94942028-94943309:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.28192138671875	2	488.26261	974.510668	0.35723	0.00017442	-0.047515	-2.32E-05	0.30972	0.00015122	488.2625163965961	80.882	0.56852	80.675	80.508	81.077	-0.20633					17	13	2	0	0	0	0.024292	1	9699	9699		58.782	23.164	1	80554			36392	8263	24914	24967	42078	42078					0.022392919599496963
KVNAMTFTF	9	Unmodified	_KVNAMTFTF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7713623046875	2	529.770603	1057.52665	-0.67767	-0.00035901	1.0352	0.00054843	0.35756	0.00018943	529.7710116956177	65.025	0.56505	64.79	64.568	65.133	-0.2345					33	13	3	0	0	0	0.2508	1	7415	7415		82.241	16.437	1	1096000			36393	2483	24915	24968	42079	42079					0.0001899819685604598
KVNAMTFTF	9	Unmodified	_KVNAMTFTF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7713623046875	2	529.770603	1057.52665	-0.50913	-0.00026972	0.63735	0.00033765	0.12823	6.7932E-05	529.7707744203664	65.087	0.52173	64.831	64.582	65.103	-0.25563					32	12	3	0	0	0	0.42604	1	7411	7411		64.207	8.7031	1	1031300			36394	2483	24915	24968	42080	42080					0.0001899819685604598
KVNAMTFTF	9	Unmodified	_KVNAMTFTF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.770603	1057.52665	-1.4058	-0.00074478	1.8464	0.00097816	0.44053	0.00023338	529.7714300219096	65.027	0.52858	64.825	64.617	65.146	-0.20254	0.0092635	0.00062931	NaN	82.241	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1168800			36395	2483	24915	24968							0.0001899819685604598
KVNAQGNLD	9	Unmodified	_KVNAQGNLD_					0	0	0		SVIL|p.M1023V|1|0.17|ENSG00000197321|chr10:29523547-29523547|T/C|missense_variant	SVIL|p.M1023V|1|0.17|ENSG00000197321|chr10:29523547-29523547|T/C|missense_variant	SVIL|p.M1023V|1|0.17|ENSG00000197321|chr10:29523547-29523547|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.297607421875	2	479.751256	957.487959	0.22772	0.00010925	1.5267	0.00073245	1.7545	0.0008417	479.7547609823588	49.891	0.69155	49.74	49.407	50.098	-0.1512					33	18	3	0	0	0	0.022924	1	5116	5116		73.975	18.471	1	99126			36396	38044	24916	24969	42081	42081					0.007514088867083046
KVNDRIRK	8	Unmodified	_KVNDRIRK_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.8423461914062	2	514.819807	1027.62506	1.6456	0.00084718	0.89026	0.00045832	2.5358	0.0013055	514.8200912258537	23.336	0.90566	23.145	22.711	23.616	-0.19117					61	20	4	0	0	0	0.027866	1	933	933		50.025	2.3672	1	825130	+		36397	22118	24917	24970	42082	42082					0.1123536255693125
KVNEGFLLGL	10	Unmodified	_KVNEGFLLGL_					0	0	0		ENST00000553349.1_1_14:37754581-37892775:+|nuORF	ENST00000553349.1_1_14:37754581-37892775:+|nuORF	ENST00000553349.1_1_14:37754581-37892775:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3180541992188	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0992	1	11538	11538		32.812	3.6629	1	11705000			36398	16637	24918	24971	42083	42083					0.08222889028479585
KVNESSLNW	9	Unmodified	_KVNESSLNW_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7721557617188	2	538.772188	1075.52982	-0.48201	-0.0002597	-0.21595	-0.00011635	-0.69797	-0.00037605	538.7719860617682	47.416	0.98603	47.32	46.645	47.631	-0.096653					66	26	4	0	0	0	0.12933	1	4646	4646		104.01	28.97	1	1777400			36399	3635	24919	24972	42084	42084					-0.0049203542478153395
KVNESSLNW	9	Unmodified	_KVNESSLNW_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.772188	1075.52982	-0.50406	-0.00027157	-0.2688	-0.00014482	-0.77286	-0.00041639	538.7719650189227	47.752	0.84169	47.476	46.971	47.812	-0.27598	0.087	-6.116E-05	NaN	104.01	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2027300			36400	3635	24919	24972							-0.0049203542478153395
KVNESSLNW	9	Unmodified	_KVNESSLNW_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.772188	1075.52982	-0.76169	-0.00041038	-0.15278	-8.2314E-05	-0.91447	-0.00049269	538.7720599683472	47.558	1.0224	47.371	46.651	47.673	-0.18684	-0.017576	6.386E-05	NaN	104.01	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1975600			36401	3635	24919	24972							-0.0049203542478153395
KVNGKLCPL	9	Unmodified	_KVNGKLCPL_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2559814453125	2	486.288963	970.563372	-0.48082	-0.00023382	-1.77	-0.00086072	-2.2508	-0.0010945	486.2882566124204	52.999	0.79492	52.999	52.472	53.267	0					30	20	2	0	0	0	0.024263	1	5710	5710		60.972	10.947	1	100370			36402	4552	24920	24973	42085	42085					0.0769129481342361
KVNIIYKP	8	Unmodified	_KVNIIYKP_					0	0	0			REV__ENSG00000161057|ENST00000292644|PSMC2	REV__ENSG00000161057|ENST00000292644|PSMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2033996582031	2	487.805303	973.596052	-0.23683	-0.00011553	0.93993	0.00045851	0.7031	0.00034298	487.8054767532076	39.901	0.47104	39.676	39.42	39.891	-0.225					21	11	2	0	0	0	0.027866	1	3373	3373		33.516	3.0119	1	172920	+		36403	25374	24921	24974	42086	42086					0.10819825207943268
KVNISKAKT	9	Unmodified	_KVNISKAKT_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7850036621094	2	494.811116	987.60768	0.47466	0.00023487	-1.6651	-0.0008239	-1.1904	-0.00058904	494.8103103804662	32.522	0.41434	32.33	32.162	32.576	-0.19261					15	9	2	0	0	0	0.023837	1	2279	2279		45.972	0	1	97797			36404	7160	24922	24975	42087	42087					0.11338022231268496
KVNKGPRV	8	Unmodified	_KVNKGPRV_					0	0	0			REV__nc|ENSG00000121807|P41597|CCR2	REV__nc|ENSG00000121807|P41597|CCR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2615966796875	2	449.285069	896.555585	-0.29949	-0.00013456	0.37484	0.00016841	0.07535	3.3854E-05	449.28517855148203	31.381	0.495	31.196	30.945	31.44	-0.18503					21	12	2	0	0	0	0.027866	1	2077	2077		62.978	5.1671	1	160450	+		36405	36617	24923	24976	42088	42088					0.10316903608190842
KVNKKNLI	8	Unmodified	_KVNKKNLI_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.297607421875	2	478.816202	955.617851	0.12974	6.2124E-05	-0.73142	-0.00035021	-0.60167	-0.00028809	478.8157709165366	49.45	0.73783	49.298	49.007	49.744	-0.15169					55	19	4	0	0	0	0.027866	1	5116	5116		62.978	20.504	1	3779100	+		36406	23835	24924	24977	42089	42089					0.13826629956508896
KVNLFFENL	9	Unmodified	_KVNLFFENL_					0	0	0			REV__nc|ENSG00000110619|P49589-2|CARS1	REV__nc|ENSG00000110619|P49589-2|CARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3112182617188	2	562.310949	1122.60735	0.47833	0.00026897	-0.52432	-0.00029483	-0.045989	-2.586E-05	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.18915	1	10980	10980		90.777	3.0224	1	3090500	+		36407	21864	24925	24978	42090	42090					0.05094602511417179
KVNLQEHAE	9	Unmodified	_KVNLQEHAE_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.3192138671875	2	534.277638	1066.54072	-0.17151	-9.1636E-05	0.27873	0.00014892	0.10721	5.728E-05	534.2776520108686	33.459	0.76665	33.516	33.245	34.012	0.056572					46	19	3	0	0	0	0.024021	1	2393	2393		40.778	0	1	1085900	+		36408	21179	24926	24979	42091	42091					0.010113669495240174
KVNMDEKIT	9	Unmodified	_KVNMDEKIT_					0	0	0			REV__ENSG00000111537|ENST00000229135|IFNG	REV__ENSG00000111537|ENST00000229135|IFNG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2882080078125	2	539.284074	1076.5536	-0.54178	-0.00029218	3.3385	0.0018004	2.7967	0.0015082	539.78829155381	89.768	0.539	89.782	89.425	89.964	0.013443					15	12	2	0	0	0	0.024374	1	11245	11245		32.812	6.1195	1	327940	+		36409	21923	24927	24980	42092	42092					0.01838062017395714
KVNPKSFQ	8	Unmodified	_KVNPKSFQ_					0	0	0		PASD1|p.S17F|1|0.68|ENSG00000166049|chrX:151604667-151604667|C/T|missense_variant	PASD1|p.S17F|1|0.68|ENSG00000166049|chrX:151604667-151604667|C/T|missense_variant	PASD1|p.S17F|1|0.68|ENSG00000166049|chrX:151604667-151604667|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.77301025390625	2	474.269084	946.523616	0.963	0.00045672	2.7403	0.0012996	3.7033	0.0017564	474.27032537429324	17.571	0.67014	17.428	17.276	17.946	-0.14278					20	13	2	0	0	0	1.043	1	191	191		30.504	5.0535	1	90009			36410	18944	24928	24981	42093	42093					0.048214911343848144
KVNPNNVL	8	Unmodified	_KVNPNNVL_					0	0	0			REV__ENSG00000125962|ENST00000473968|ARMCX5	REV__ENSG00000125962|ENST00000473968|ARMCX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.2615966796875	2	449.261259	896.507966	-0.34671	-0.00015576	0.52047	0.00023383	0.17376	7.8065E-05	449.2613411260057	31.304	0.82402	31.119	30.576	31.4	-0.18503					39	20	2	0	0	0	0.61897	1	2077	2077		74.517	6.0319	1	1452200	+		36411	22864	24929	24982	42094	42094					0.055572046173210765
KVNPVWIR	8	Unmodified	_KVNPVWIR_					0	0	0			REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	REV__nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3030700683594	2	506.308544	1010.60253	0.14131	7.1547E-05	2.185	0.0011063	2.3263	0.0011778	506.81102265623053	56.845	0.40913	56.643	56.482	56.891	-0.20209					15	10	2	0	0	0	0.027866	1	6203	6203		26.796	0	1	125020	+		36412	25690	24930	24983	42095	42095					0.0976576315931652
KVNQFCFE	8	Unmodified	_KVNQFCFE_					0	0	0			REV__nc|ENSG00000204084|P32019-3|INPP5B	REV__nc|ENSG00000204084|P32019-3|INPP5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.810302734375	2	507.739302	1013.46405	-0.15518	-7.8789E-05	3.0145	0.0015306	2.8594	0.0014518	507.7407460894364	63.996	0.54971	63.804	63.565	64.115	-0.19243					21	13	2	0	0	0	0.027866	1	7297	7297		33.516	0	1	211970	+		36413	28565	24931	24984	42096	42096					-0.042141478713119795
KVNRETKVS	9	Unmodified	_KVNRETKVS_					0	0	0			REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.8082275390625	2	530.809105	1059.60366	-0.91854	-0.00048757	0.55172	0.00029286	-0.36682	-0.00019471	530.8092644046237	25.877	0.4739	25.854	25.609	26.083	-0.023087					31	10	4	0	0	0	0.4752	1	1271	1271		60.972	6.2496	1	582200	+		36414	32382	24932	24985	42097	42097					0.0762393273755606
KVNRETKVS	9	Unmodified	_KVNRETKVS_					0	0	0			REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.809105	1059.60366	0.033038	1.7537E-05	-0.28529	-0.00015144	-0.25225	-0.0001339	530.8087720858736	25.732	0.46857	25.812	25.581	26.049	0.08009	-0.026276	-0.00078065	NaN	60.972	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595100	+		36415	32382	24932	24985							0.0762393273755606
KVNRQLQT	8	Unmodified	_KVNRQLQT_					0	0	0		ENSG00000180720|ENST00000682254|CHRM4	ENSG00000180720|ENST00000682254|CHRM4	ENSG00000180720|ENST00000682254|CHRM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.81317138671875	2	493.790715	985.566878	-0.66435	-0.00032805	-2.9688	-0.001466	-3.6331	-0.001794	493.7893287623823	29.812	1.3155	29.64	28.893	30.209	-0.17258					49	30	2	0	0	0	0.027866	1	1872	1872		60.294	0	1	294680			36416	8992	24933	24986	42098	42098					0.07351680911654057
KVNRTEVSV	9	Unmodified	_KVNRTEVSV_					0	0	0			REV__nc|ENSG00000182397|Q6ZS02|DNM1P46	REV__nc|ENSG00000182397|Q6ZS02|DNM1P46	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.297119140625	2	516.29583	1030.57711	-0.41218	-0.00021281	1.7967	0.00092765	1.3846	0.00071484	516.2966569634165	36.966	1.0255	36.746	36.365	37.39	-0.2195					79	25	4	0	0	0	0.19099	1	2905	2905		90.37	5.4543	1	5890400	+		36417	30640	24934	24987	42099	42099					0.06304243846238933
KVNSWDLEKK	10	Unmodified	_KVNSWDLEKK_					0	0	0		ENST00000505213.5_2_13:33111115-33112774:-|nuORF	ENST00000505213.5_2_13:33111115-33112774:-|nuORF	ENST00000505213.5_2_13:33111115-33112774:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2314453125	3	416.231189	1245.67174	-0.81462	-0.00033907	1.726	0.00071839	0.91133	0.00037933	416.2319342734464	21.111	2.258	20.898	20.525	22.783	-0.2128					156	46	7	0	0	0	1.0975	1	642	642		33.039	0.28887	1	3140900			36418	15730	24935	24988	42100	42100					0.0587275759755812
KVNVFEHTYYI	11	Unmodified	_KVNVFEHTYYI_					0	0	0		ENST00000531788.5_1_6:135639599-135639752:-|nuORF	ENST00000531788.5_1_6:135639599-135639752:-|nuORF	ENST00000531788.5_1_6:135639599-135639752:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.30340576171875	3	471.578477	1411.7136	1.3605	0.00064156	2.0125	0.00094903	3.3729	0.0015906	471.57933334976536	17.691	0.44923	17.537	17.308	17.758	-0.15403					17	8	3	0	0	0	0.024828	1	239	239		13.508	8.095	1	41359			36419	16269	24936	24989	42101	42101					0.024213132861177655
KVNVFEHTYYI	11	Unmodified	_KVNVFEHTYYI_					0	0	0		ENST00000531788.5_1_6:135639599-135639752:-|nuORF	ENST00000531788.5_1_6:135639599-135639752:-|nuORF	ENST00000531788.5_1_6:135639599-135639752:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	471.578477	1411.7136	-0.04351	-2.0518E-05	3.3471	0.0015784	3.3036	0.0015579	471.5801511239087	17.795	0.24976	17.589	17.364	17.614	-0.20669	0.02593	0.0014812	NaN	13.508	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8235.7			36420	16269	24936	24989							0.024213132861177655
KVNVIQVP	8	Unmodified	_KVNVIQVP_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7535095214844	2	448.781828	895.549102	0.018303	8.2142E-06	0.67382	0.0003024	0.69213	0.00031061	448.78204806252444	65.435	0.62727	65.472	65.117	65.745	0.037384					20	17	2	0	0	0	0.027866	1	7676	7676		35.201	0	1	194540	+		36421	25112	24937	24990	42102	42102					0.09714965656803543
KVNVKVFII	9	Unmodified	_KVNVKVFII_					0	0	0		ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7870483398438	2	530.349877	1058.6852	-0.46312	-0.00024562	-4.1663	-0.0022096	-4.6294	-0.0024552	530.848719434123	56.906	0.3354	56.739	56.597	56.932	-0.1672					13	8	3	0	0	0	0.024541	1	6172	6172		24.203	15.971	1	170700			36422	7927	24938	24991	42103	42103					0.15820660167469214
KVPADLSND	9	Unmodified	_KVPADLSND_					0	0	0			REV__ENSG00000089022|ENST00000550735|MAPKAPK5	REV__ENSG00000089022|ENST00000550735|MAPKAPK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.78680419921875	2	479.745639	957.476725	-0.1205	-5.7811E-05	1.6312	0.00078254	1.5107	0.00072473	479.7463305933244	22.792	0.83491	22.717	22.458	23.293	-0.075296					37	18	3	0	0	0	0.024397	1	790	790		39.253	0.44669	1	248530	+		36423	20835	24939	24992	42104	42104					-0.003714132074264853
KVPAKRPG	8	Unmodified	_KVPAKRPG_					0	0	0			REV__nc|ENSG00000229809|P0C7X2-5|ZNF688	REV__nc|ENSG00000229809|P0C7X2-5|ZNF688	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.7144775390625	2	426.774337	851.534121	-0.45938	-0.00019605	0.029396	1.2545E-05	-0.42999	-0.00018351	426.77412485780695	30.392	0.50074	30.214	29.909	30.41	-0.17818					17	11	2	0	0	0	0.027866	1	1950	1950		12.959	0.75233	1	66103	+		36424	28890	24940	24993	42105	42105					0.10241518579471176
KVPEHIPPL	9	Unmodified	_KVPEHIPPL_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2825317382812	2	515.30821	1028.60187	-0.72917	-0.00037575	0.81753	0.00042128	0.088357	4.5531E-05	515.3084537642252	80.869	1.1724	80.869	80.457	81.63	0					49	28	3	0	0	0	0.024487	1	10128	10128		31.955	1.4512	1	446110			36425	6348	24941	24994	42106	42106					0.08870923719609891
KVPEHIPPL	9	Unmodified	_KVPEHIPPL_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.30821	1028.60187	-0.93652	-0.0004826	1.695	0.00087347	0.75852	0.00039087	515.3089733946755	80.931	0.76577	80.779	80.471	81.237	-0.15168	-0.041427	6.2525E-05	NaN	31.955	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428330			36426	6348	24941	24994							0.08870923719609891
KVPEHIPPL	9	Unmodified	_KVPEHIPPL_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.30821	1028.60187	-1.3695	-0.00070571	1.9787	0.0010196	0.60919	0.00031392	515.3091937381117	80.79	0.76171	80.814	80.445	81.207	0.023911	-0.0066585	0.00035486	NaN	31.955	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422960			36427	6348	24941	24994							0.08870923719609891
KVPEIEVTV	9	Unmodified	_KVPEIEVTV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MSMS	OPSCC_39_ClassI_Rep-1	1	507.2972717285156	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.336	1	58.336	57.836	58.836	0								0	0	0	0.024584	1	6608	6608		124.08	44.368	1				36428	10961	24942	24995	42107	42107					0.07467493900242061
KVPEIEVTV	9	Unmodified	_KVPEIEVTV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MSMS	OPSCC_39_ClassI_Rep-1	1	507.2972106933594	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.418	1	58.418	57.918	58.918	0								0	0	0	0.042231	1	6621	6621		112.41	5.9957	1				36429	10961	24942	24995	42108	42108					0.07467493900242061
KVPEIEVTV	9	Unmodified	_KVPEIEVTV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MSMS	OPSCC_39_ClassI_Rep-1	1	507.2967834472656	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.507	1	58.507	58.007	59.007	0								0	0	0	0.073652	1	6635	6635		98.629	5.4339	1				36430	10961	24942	24995	42109	42109					0.07467493900242061
KVPEIEVTV	9	Unmodified	_KVPEIEVTV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MSMS	OPSCC_39_ClassI_Rep-2	2	507.2967224121094	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.617	1	58.43	57.93	58.93	-0.18705								0	0	0	0.035202	1	6619	6619		115.49	41.239	1				36431	10961	24942	24995	42110	42110					0.07467493900242061
KVPEIEVTV	9	Unmodified	_KVPEIEVTV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MSMS	OPSCC_39_ClassI_Rep-2	2	507.2969970703125	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.686	1	58.499	57.999	58.999	-0.18705								0	0	0	0.035202	1	6630	6630		115.49	35.781	1				36432	10961	24942	24995	42111	42111					0.07467493900242061
KVPEIEVTV	9	Unmodified	_KVPEIEVTV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MSMS	OPSCC_39_ClassI_Rep-3	3	507.2969665527344	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.235	1	58.327	57.827	58.827	0.091217								0	0	0	0.022316	1	6513	6513		127.46	10.558	1				36433	10961	24942	24995	42112	42112					0.07467493900242061
KVPEMKMY	8	Unmodified	_KVPEMKMY_					0	0	0			REV__ENSG00000100425|ENST00000404760|BRD1	REV__ENSG00000100425|ENST00000404760|BRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.8156127929688	2	513.261556	1024.50856	-0.46424	-0.00023828	-0.84625	-0.00043435	-1.3105	-0.00067263	513.2611040186077	45.103	0.42918	44.85	44.59	45.019	-0.25252					29	10	4	0	0	0	0.027866	1	4223	4223		33.516	0	1	970370	+		36434	21115	24943	24996	42113	42113					-0.0027146004947553593
KVPHIVPNH	9	Unmodified	_KVPHIVPNH_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8203125	2	520.803626	1039.5927	-1.1627	-0.00060553	1.9555	0.0010184	0.79279	0.00041289	520.8052313558625	80.789	0.32179	80.813	80.53	80.852	0.023903					9	7	2	0	0	0	0.024457	1	9940	9940		29.15	0	1	99841			36435	1883	24944	24997	42114	42114					0.07448575153944148
KVPILGRSY	9	Unmodified	_KVPILGRSY_					0	0	0			REV__nc|ENSG00000226941|Q15415-2|RBMY1F	REV__nc|ENSG00000226941|Q15415-2|RBMY1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.782470703125	2	516.813659	1031.61277	-1.6232	-0.00083889	-2.7406	-0.0014164	-4.3638	-0.0022553	516.8120964217239	90.959	0.53902	90.959	90.553	91.092	0					17	12	2	0	0	0	0.024495	1	11525	11525		14.137	3.8719	1	64718	+		36436	26400	24945	24998	42115	42115					0.09822326093922129
KVPILGRSY	9	Unmodified	_KVPILGRSY_					0	0	0			REV__nc|ENSG00000226941|Q15415-2|RBMY1F	REV__nc|ENSG00000226941|Q15415-2|RBMY1F	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.813659	1031.61277	-0.32264	-0.00016674	-4.082	-0.0021096	-4.4046	-0.0022764	516.8110447092122	90.999	0.37482	90.987	90.659	91.034	-0.012383	0.039882	-8.8845E-05	NaN	14.137	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82288	+		36437	26400	24945	24998							0.09822326093922129
KVPILGRSY	9	Unmodified	_KVPILGRSY_					0	0	0			REV__nc|ENSG00000226941|Q15415-2|RBMY1F	REV__nc|ENSG00000226941|Q15415-2|RBMY1F	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.813659	1031.61277	-0.42704	-0.0002207	-5.5982	-0.0028932	-6.0253	-0.0031139	516.8106968242624	91.018	0.66487	90.894	90.834	91.499	-0.12341	-0.052592	-0.0016561	NaN	14.137	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158390	+		36438	26400	24945	24998							0.09822326093922129
KVPKLIKVV	9	Unmodified	_KVPKLIKVV_					0	0	0			REV__ENSG00000070770|ENST00000262506|CSNK2A2	REV__ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.25390625	2	512.36807	1022.72159	-0.68142	-0.00034914	4.0678	0.0020842	3.3864	0.0017351	512.8717558007936	54.303	0.16482	54.167	54.053	54.218	-0.13617					6	4	2	0	0	0	0.024541	1	5764	5764		3.6843	0	1	53921	+		36439	20436	24946	24999	42116	42116					0.21113537064195498
KVPLLVPGL	9	Unmodified	_KVPLLVPGL_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30499267578125	2	468.318046	934.621539	-0.70269	-0.00032908	2.7556	0.0012905	2.0529	0.00096141	468.3192097810602	61.957	0.24804	61.957	61.832	62.08	0					12	6	3	0	0	0	0.024	1	7213	7213		65.803	25.231	1	280610			36440	8473	24947	25000	42117	42117					0.1516129973038005
KVPMWNLHL	9	Unmodified	_KVPMWNLHL_					0	0	0			REV__ENST00000342756.9_1_4:57366815-57367869:+|nuORF	REV__ENST00000342756.9_1_4:57366815-57367869:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2963256835938	2	569.315512	1136.61647	-0.28774	-0.00016382	2.6316	0.0014982	2.3439	0.0013344	569.3168099328246	61.627	0.3718	61.37	61.133	61.505	-0.25725					20	8	3	0	0	0	0.024436	1	6857	6857		30.504	1.3336	1	393400	+		36441	30650	24948	25001	42118	42118					0.05362672596106677
KVPNPWHI	8	Unmodified	_KVPNPWHI_					0	0	0			REV__ENST00000422840.6_1_16:74526947-74527004:-|nuORF	REV__ENST00000422840.6_1_16:74526947-74527004:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7378234863281	2	495.779619	989.544686	-0.22781	-0.00011295	4.2381	0.0021011	4.0103	0.0019882	495.78149803517	36.705	0.51759	36.5	36.282	36.8	-0.20518					30	12	3	0	0	0	0.027866	1	2874	2874		19.36	1.0356	1	520750	+		36442	32204	24949	25002	42119	42119					0.049495012338979905
KVPPTVQKP	9	Unmodified	_KVPPTVQKP_					0	0	0		ENST00000465534.5_1_1:207500166-207510288:+|nuORF;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.78753662109375	2	497.30821	992.601866	0.33589	0.00016704	-0.27868	-0.00013859	0.05721	2.8451E-05	497.3079300023481	60.208	1.2847	60.208	59.711	60.996	0					52	34	2	0	0	0	0.024319	1	6993	6993		47.657	13.485	1	288400			36443	9855	24950	25003	42120	42120					0.10526923719623937
KVPPTVQKP	9	Unmodified	_KVPPTVQKP_					0	0	0		ENST00000465534.5_1_1:207500166-207510288:+|nuORF;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7871398925781	2	497.30821	992.601866	-0.48493	-0.00024116	0.34271	0.00017043	-0.14222	-7.0729E-05	497.3082719043661	60.499	1.496	60.286	59.564	61.06	-0.2134					53	39	2	0	0	0	0.024374	1	6989	6989		40.778	16.259	1	272170			36444	9855	24950	25003	42121	42121					0.10526923719623937
KVPPTVQKP	9	Unmodified	_KVPPTVQKP_					0	0	0		ENST00000465534.5_1_1:207500166-207510288:+|nuORF;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	497.30821	992.601866	-0.71816	-0.00035715	-0.38578	-0.00019185	-1.1039	-0.000549	497.30752856310136	60.395	0.36671	60.219	60.116	60.483	-0.1761	-0.045922	-0.00077113	NaN	47.657	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81040			36445	9855	24950	25003							0.10526923719623937
KVPPTVQKP	9	Unmodified	_KVPPTVQKP_					0	0	0		ENST00000465534.5_1_1:207500166-207510288:+|nuORF;nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	ENST00000465534.5_1_1:207500166-207510288:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	497.30821	992.601866	-0.77964	-0.00038772	-0.41465	-0.00020621	-1.1943	-0.00059393	497.30798072574686	60.603	0.33251	60.35	60.212	60.544	-0.25373	0.085132	-0.00079984	NaN	47.657	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43608			36446	9855	24950	25003							0.10526923719623937
KVPRHGKPL	9	Unmodified	_KVPRHGKPL_					0	0	0		ENST00000570443.2_1_6:37475385-37503375:+|nuORF	ENST00000570443.2_1_6:37475385-37503375:+|nuORF	ENST00000570443.2_1_6:37475385-37503375:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.240234375	2	516.327268	1030.63998	0.30811	0.00015909	-1.5634	-0.0008072	-1.2552	-0.00064812	516.8274707669833	78.97	0.12818	78.739	78.65	78.778	-0.23141					4	2	2	0	0	0	0.024506	1	9427	9427		10.866	0	1	16991			36447	17030	24951	25004	42122	42122					0.125888544249392
KVPSAHIVW	9	Unmodified	_KVPSAHIVW_					0	0	0			REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.8001098632812	2	518.800552	1035.58655	-0.21114	-0.00010954	-0.092524	-4.8002E-05	-0.30366	-0.00015754	518.800350873803	63.355	1.013	63.132	62.774	63.787	-0.223					73	25	4	0	0	0	0.35646	1	7148	7148		68.787	0.30212	1	5383100	+		36448	27873	24952	25005	42123	42123					0.07018056922424876
KVPSVETVN	9	Unmodified	_KVPSVETVN_					0	0	0			REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2032165527344	2	486.771657	971.528761	0.2145	0.00010441	-0.14262	-6.9422E-05	0.071879	3.4989E-05	486.77181020449046	39.475	0.68193	39.249	38.946	39.627	-0.2257					24	17	2	0	0	0	0.024447	1	3366	3366		32.812	4.9302	1	218130	+		36449	19181	24953	25006	42124	42124					0.04185750206340799
KVPSVETVN	9	Unmodified	_KVPSVETVN_					0	0	0			REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.771657	971.528761	-0.75153	-0.00036582	0.25782	0.0001255	-0.49371	-0.00024032	486.77188103087263	39.321	0.44128	39.156	38.862	39.304	-0.16458	-0.087132	-0.00069161	NaN	32.812	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184800	+		36450	19181	24953	25006							0.04185750206340799
KVPSVETVN	9	Unmodified	_KVPSVETVN_					0	0	0			REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	REV__ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.771657	971.528761	-0.44636	-0.00021727	0.51844	0.00025236	0.072088	3.509E-05	486.7717690132675	39.468	0.38953	39.245	39.073	39.462	-0.22311	0.0014556	-0.00043788	NaN	32.812	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235170	+		36451	19181	24953	25006							0.04185750206340799
KVPWAIPSP	9	Unmodified	_KVPWAIPSP_					0	0	0			REV__ENST00000568818.1_1_16:69964069-69965708:+|nuORF	REV__ENST00000568818.1_1_16:69964069-69965708:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7578125	2	497.789653	993.564752	0.52182	0.00025976	1.3125	0.00065335	1.8343	0.0009131	497.7891738041417	67.858	0.53435	67.858	67.644	68.179	0					23	13	2	0	0	0	0.024541	1	8150	8150		11.511	0	1	198080	+		36452	35355	24954	25007	42125	42125					0.06771252173848552
KVQAGNSSL	9	Unmodified	_KVQAGNSSL_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.24822998046875	2	452.248349	902.482145	-0.40234	-0.00018196	0.76668	0.00034673	0.36435	0.00016478	452.24849789560017	25.524	0.99236	25.524	25.211	26.203	0					55	23	4	0	0	0	0.013924	1	1215	1215		167.23	10.02	1	796250			36453	4854	24955	25008	42126	42126					0.027003103750644186
KVQAGNSSL	9	Unmodified	_KVQAGNSSL_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2482604980469	2	452.248349	902.482145	-0.59621	-0.00026963	1.0036	0.00045387	0.40738	0.00018424	452.2486488789983	25.487	0.69166	25.452	25.161	25.853	-0.034395					27	16	2	0	0	0	0.023452	1	1205	1205		146.79	3.6785	1	796710			36454	4854	24955	25008	42127	42127					0.027003103750644186
KVQAGNSSL	9	Unmodified	_KVQAGNSSL_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	452.248349	902.482145	0.36445	0.00016482	-0.19722	-8.9194E-05	0.16723	7.5628E-05	452.2481639208804	25.266	0.44677	25.346	25.134	25.581	0.08009	-0.1881	-7.084E-05	NaN	167.23	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245980			36455	4854	24955	25008							0.027003103750644186
KVQAGNSSL	9	Unmodified	_KVQAGNSSL_					0	0	0		nc|ENSG00000135069|Q9Y617-2|PSAT1;ENSG00000135069|ENST00000376588|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	nc|ENSG00000135069|Q9Y617-2|PSAT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	452.248349	902.482145	-0.23355	-0.00010562	-1.3955	-0.00063112	-1.6291	-0.00073675	452.248689354454	25.984	0.10252	25.813	25.735	25.837	-0.17078	0.27937	-0.0011547	NaN	167.23	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37089			36456	4854	24955	25008							0.027003103750644186
KVQCELNIT	9	Unmodified	_KVQCELNIT_					0	0	0		PTH2R|p.S193Rfs*8|1|0.42|ENSG00000144407|chr2:208443417-208443417|C/-|frameshift_variant;ENSG00000144407|ENST00000272847|PTH2R	PTH2R|p.S193Rfs*8|1|0.42|ENSG00000144407|chr2:208443417-208443417|C/-|frameshift_variant	PTH2R|p.S193Rfs*8|1|0.42|ENSG00000144407|chr2:208443417-208443417|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2722778320312	2	524.278792	1046.54303	-1.0608	-0.00055616	0.76905	0.0004032	-0.29176	-0.00015296	524.2790208771709	39.492	1.5196	39.393	38.772	40.292	-0.098755					73	41	2	0	0	0	0.024209	1	3363	3363		47.657	0	1	1889500			36457	5736	24956	25009	42128	42128					0.02162079362960867
KVQDDVKKN	9	Unmodified	_KVQDDVKKN_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.8092041015625	2	537.301113	1072.58767	-0.30889	-0.00016596	1.7208	0.00092461	1.412	0.00075865	537.3018428403497	31.812	0.78059	31.627	31.52	32.3	-0.18503					20	17	2	0	0	0	0.024283	1	2142	2142		65.465	22.601	1	724350	+		36458	25072	24957	25010	42129	42129					0.054282265006804664
KVQDDVTKL	9	Unmodified	_KVQDDVTKL_					0	0	0		nc|ENSG00000072756|Q96Q11-2|TRNT1;ENSG00000072756|ENST00000251607|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.298828125	2	523.298039	1044.58152	0.2043	0.00010691	3.0156	0.0015781	3.2199	0.001685	523.2996151246642	76.538	1.6888	76.55	76.128	77.817	0.011635					86	40	5	0	0	0	0.46427	1	9392	9392		61.691	2.9093	1	8080200			36459	18077	24958	25011	42130	42130					0.061017082691250835
KVQDFQGNLW	10	Unmodified	_KVQDFQGNLW_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	617.8145751953125	2	617.814387	1233.61422	-0.51395	-0.00031753	0.80555	0.00049768	0.2916	0.00018015	617.8147128059795	61.707	0.60357	61.493	61.209	61.813	-0.21375					33	14	3	0	0	0	0.26927	1	6920	6920		112.41	48.204	1	1110200			36460	3505	24959	25012	42131	42131					0.006759153920029348
KVQDFQGNLW	10	Unmodified	_KVQDFQGNLW_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	617.814387	1233.61422	-1.5662	-0.00096762	1.6994	0.0010499	0.13319	8.2287E-05	617.8152761637192	61.607	0.64229	61.429	61.162	61.804	-0.17781	-0.058994	0.00081235	NaN	112.41	58	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1115800			36461	3505	24959	25012							0.006759153920029348
KVQDFQGNLW	10	Unmodified	_KVQDFQGNLW_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	617.814387	1233.61422	-0.1912	-0.00011813	0.089163	5.5086E-05	-0.10204	-6.3041E-05	617.8144013903957	61.8	1.0312	61.542	61.258	62.29	-0.25725	0.054033	-0.0011773	NaN	112.41	74	25	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1232900			36462	3505	24959	25012							0.006759153920029348
KVQELQASM	9	Oxidation (M)	_KVQELQASM(Oxidation (M))_		KVQELQASM(1)		KVQELQASM(75)	0	0	1		nc|ENSG00000176531|Q6NSJ2-2|PHLDB3;ENSG00000176531|ENST00000292140|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.7089233398438	2	525.268424	1048.5223	-0.33569	-0.00017633	0.37758	0.00019833	0.041888	2.2002E-05	525.2683563972915	43.033	0.50013	42.795	42.561	43.061	-0.23737					24	12	3	0	0	0	0.024017	1	3916	3916		75.043	20.267	1	159380			36463	8645	24960	25013	42132	42132		361			-2.511016714379366E-05
KVQELQASM	9	Oxidation (M)	_KVQELQASM(Oxidation (M))_		KVQELQASM(1)		KVQELQASM(100)	0	0	1		nc|ENSG00000176531|Q6NSJ2-2|PHLDB3;ENSG00000176531|ENST00000292140|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.7091064453125	2	525.268424	1048.5223	-0.56878	-0.00029876	-0.0039284	-2.0634E-06	-0.57271	-0.00030083	525.2681302080837	43.019	0.57735	42.793	42.484	43.061	-0.22597					20	14	2	0	0	0	0.021219	1	3917	3917		101.25	46.476	1	179020			36464	8645	24960	25013	42133	42133		361			-2.511016714379366E-05
KVQELQASM	9	Oxidation (M)	_KVQELQASM(Oxidation (M))_					0	0	1		nc|ENSG00000176531|Q6NSJ2-2|PHLDB3;ENSG00000176531|ENST00000292140|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.268424	1048.5223	-0.68448	-0.00035954	2.8204	0.0014815	2.1359	0.0011219	525.7709744105248	42.733	0.25336	42.733	42.569	42.823	0	0.018734	-0.0027454	NaN	124.08	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41868			36465	8645	24960	25013				361			-2.511016714379366E-05
KVQELQASM	9	Oxidation (M)	_KVQELQASM(Oxidation (M))_					0	0	1		nc|ENSG00000176531|Q6NSJ2-2|PHLDB3;ENSG00000176531|ENST00000292140|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	nc|ENSG00000176531|Q6NSJ2-2|PHLDB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.268424	1048.5223	0.077143	4.0521E-05	6.7884	0.0035657	6.8656	0.0036063	525.2719667991207	42.467	0.57034	42.493	42.255	42.825	0.026012	-0.22182	0.0014231	NaN	124.08	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1400100			36466	8645	24960	25013				361			-2.511016714379366E-05
KVQEMRDQ	8	Unmodified	_KVQEMRDQ_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2739868164062	2	517.258391	1032.50223	-0.68124	-0.00035238	-0.92259	-0.00047722	-1.6038	-0.00082959	517.2588663687312	45.358	0.43486	45.358	45.079	45.514	0					15	12	2	0	0	0	0.027866	1	4405	4405		51.335	5.3835	1	372730			36467	1577	24961	25014	42134	42134					-0.012722619566602589
KVQGKGKAR	9	Unmodified	_KVQGKGKAR_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.29998779296875	2	486.309075	970.603597	-0.31087	-0.00015118	2.9861	0.0014522	2.6752	0.001301	486.31040100123755	68.624	0.71021	68.643	68.427	69.137	0.018921					28	18	2	0	0	0	0.024405	1	8228	8228		20.947	4.4738	1	177470	+		36468	20254	24962	25015	42135	42135					0.11711977528227635
KVQIGLVLL	9	Unmodified	_KVQIGLVLL_					0	0	0			REV__ENSG00000163624|ENST00000295887|CDS1	REV__ENSG00000163624|ENST00000295887|CDS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7886657714844	2	491.836603	981.658653	0.64458	0.00031703	-0.6598	-0.00032451	-0.01522	-7.4858E-06	491.8361172210791	78.431	0.95103	78.239	77.806	78.757	-0.19211					42	22	3	0	0	0	0.024381	1	9616	9616		55.504	5.4797	1	988920	+		36469	25602	24963	25016	42136	42136					0.1670897127612534
KVQIKTER	8	Unmodified	_KVQIKTER_					0	0	0		ENST00000585043.5_1_17:38375734-38416808:+|nuORF;ENST00000583268.1_1_17:38412646-38433335:+|nuORF	ENST00000585043.5_1_17:38375734-38416808:+|nuORF	ENST00000585043.5_1_17:38375734-38416808:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3084716796875	2	501.308741	1000.60293	-0.059795	-2.9976E-05	-0.32855	-0.00016471	-0.38835	-0.00019468	501.3084388248307	21.557	0.72547	21.366	21.128	21.853	-0.19072					37	14	4	0	0	0	0.80469	1	690	690		58.782	7.4465	1	547120			36470	17192	24964	25017	42137	42137					0.10265138088516323
KVQINVVK	8	Unmodified	_KVQINVVK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2822265625	2	464.302927	926.591301	0.25504	0.00011841	-0.47553	-0.00022079	-0.2205	-0.00010238	464.3025608773619	69.137	0.37441	68.895	68.79	69.164	-0.24277					12	8	2	0	0	0	0.027866	1	8046	8046		42.474	23.114	1	61632			36471	1175;38049	24965	25018	42138	42138					0.125069410651804
KVQMLLGL	8	Unmodified	_KVQMLLGL_					0	0	0		ENST00000433446.1_1_7:86781137-86781239:-|nuORF	ENST00000433446.1_1_7:86781137-86781239:-|nuORF	ENST00000433446.1_1_7:86781137-86781239:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.76080322265625	2	451.280606	900.546659	-0.08012	-3.6156E-05	-0.48165	-0.00021736	-0.56177	-0.00025351	451.2807484406256	38.966	0.53871	38.741	38.483	39.022	-0.2257					30	14	3	0	0	0	0.027866	1	3222	3222		20.482	0	1	372540			36472	14224	24966	25019	42139	42139					0.09240793927483537
KVQNNNGR	8	Unmodified	_KVQNNNGR_					0	0	0		nc|ENSG00000116885|Q8WVF1-2|OSCP1;ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1	nc|ENSG00000116885|Q8WVF1-2|OSCP1	nc|ENSG00000116885|Q8WVF1-2|OSCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.77752685546875	2	465.249215	928.483876	0.14253	6.631E-05	-3.0869	-0.0014362	-2.9444	-0.0013699	465.24765940288796	49.633	0.5899	49.633	49.141	49.731	0					25	15	2	0	0	0	0.027866	1	5093	5093		18.324	0	1	143220			36473	3589	24967	25020	42140	42140					0.016773641836607567
KVQPPQLPE	9	Unmodified	_KVQPPQLPE_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7793579101562	2	518.295299	1034.57605	-0.17913	-9.2842E-05	-4.3195	-0.0022388	-4.4987	-0.0023316	518.7932201323719	51.573	0.20223	51.573	51.431	51.633	0					7	5	2	0	0	0	0.024323	1	5481	5481		44.117	8.9648	1	61596	+		36474	24334	24968	25021	42141	42141					0.06014029477319127
KVQPPRLN	8	Unmodified	_KVQPPRLN_					0	0	0		ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.29052734375	2	476.290351	950.566149	0.49343	0.00023502	-0.52479	-0.00024995	-0.031359	-1.4936E-05	476.2899039169151	18.986	0.59298	18.782	18.559	19.152	-0.20371					23	11	4	0	0	0	0.56067	1	371	371		79.939	8.5613	1	364080			36475	5069	24969	25022	42142	42142					0.08888886262593587
KVQQQLKTV	9	Unmodified	_KVQQQLKTV_					0	0	0			REV__ENSG00000143756|ENST00000366862|FBXO28	REV__ENSG00000143756|ENST00000366862|FBXO28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.772705078125	2	536.329673	1070.64479	-0.29182	-0.00015651	-0.48544	-0.00026036	-0.77726	-0.00041687	536.3293511761455	41.316	0.38861	41.316	41.153	41.542	0					20	10	2	0	0	0	0.024021	1	3728	3728		49.442	0	1	198000	+		36476	24278	24970	25023	42143	42143					0.11229693777045213
KVQQQPVS	8	Unmodified	_KVQQQPVS_					0	0	0			REV__ENSG00000162063|ENST00000397066|CCNF	REV__ENSG00000162063|ENST00000397066|CCNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2589111328125	2	457.258717	912.50288	-0.34406	-0.00015732	0.4315	0.00019731	0.087442	3.9984E-05	457.2588638222285	28.065	2.0457	28.065	27.215	29.26	0					140	51	6	0	0	0	0.33369	1	1641	1641		106.42	10.225	1	9056300	+		36477	25413	24971	25024	42144	42144					0.043129007547122455
KVQRARVE	8	Unmodified	_KVQRARVE_					0	0	0			REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.29827880859375	2	493.298707	984.582862	3.0698	0.0015143	-3.1121	-0.0015352	-0.042324	-2.0879E-05	493.2970997159272	19.052	0.39458	19.115	18.942	19.337	0.063307					10	7	2	0	0	0	1.0009	1	331	331		37.159	8.0096	1	49745	+		36478	24734	24972	25025	42145	42145					0.08995387148547707
KVQRARVE	8	Unmodified	_KVQRARVE_					0	0	0			REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	493.298707	984.582862	3.0698	0.0015143	-3.1121	-0.0015352	-0.042324	-2.0879E-05	493.2970997159272	19.052	0.39458	19.115	18.942	19.337	0.063307	0.026496	-0.0012463	NaN	37.159	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49745	+		36479	24734	24972	25025							0.08995387148547707
KVQRARVE	8	Unmodified	_KVQRARVE_					0	0	0			REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.298707	984.582862	0.038091	1.879E-05	-0.31077	-0.0001533	-0.27268	-0.00013451	493.29839310238344	19.205	0.39691	19.044	18.836	19.233	-0.16079	-0.04426	0.0015175	NaN	37.159	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48366	+		36480	24734	24972	25025							0.08995387148547707
KVQRARVE	8	Unmodified	_KVQRARVE_					0	0	0			REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.298707	984.582862	0.75321	0.00037156	-0.7984	-0.00039385	-0.045194	-2.2294E-05	493.2981967998064	19.331	0.39712	19.131	18.908	19.305	-0.2001	0.04195	0.0010364	NaN	37.159	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56460	+		36481	24734	24972	25025							0.08995387148547707
KVQRARVE	8	Unmodified	_KVQRARVE_					0	0	0			REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.298707	984.582862	1.8434	0.00090933	-2.2581	-0.0011139	-0.41476	-0.0002046	493.29748280292614	19.298	0.34719	19.064	18.878	19.226	-0.23345	-0.024185	-0.00040377	NaN	37.159	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59696	+		36482	24734	24972	25025							0.08995387148547707
KVQVFDPK	8	Unmodified	_KVQVFDPK_					0	0	0			REV__ENSG00000076826|ENST00000160298|CAMSAP3	REV__ENSG00000076826|ENST00000160298|CAMSAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.269287109375	2	480.779285	959.544017	0.024336	1.17E-05	-2.2112	-0.0010631	-2.1869	-0.0010514	480.7772211605734	30.963	0.45734	30.722	30.497	30.954	-0.24109					13	10	2	0	0	0	0.027866	1	2017	2017		58.782	19.976	1	97390	+		36483	20573	24973	25026	42146	42146					0.06262661794175983
KVQVRVAR	8	Unmodified	_KVQVRVAR_					0	0	0		ENST00000323460.9_1_3:196612563-196612614:+|nuORF	ENST00000323460.9_1_3:196612563-196612614:+|nuORF	ENST00000323460.9_1_3:196612563-196612614:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2837219238281	2	478.311618	954.608683	-0.31817	-0.00015219	2.6592	0.0012719	2.3411	0.0011198	478.31239326829984	75.611	0.40018	75.353	75.117	75.517	-0.25866					15	9	2	0	0	0	0.027866	1	8952	8952		12.207	0	1	58578			36484	12239	24974	25027	42147	42147					0.12956281390836466
KVRDKDYDLS	10	Unmodified	_KVRDKDYDLS_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.55029296875	3	413.550698	1237.63027	-0.32442	-0.00013416	-0.41307	-0.00017082	-0.73749	-0.00030499	413.55056734704164	29.31	1.3514	29.388	28.865	30.216	0.078344					51	33	2	0	0	0	1.0177	1	1733	1733		43.651	2.2242	1	4836100	+		36485	25663	24975	25028	42148	42148					0.020955768382464157
KVREAVLK	8	Unmodified	_KVREAVLK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.81121826171875	2	471.808377	941.6022	1.3567	0.00064011	-1.4299	-0.00067462	-0.07314	-3.4508E-05	471.8075345958301	19.484	0.98993	19.25	18.533	19.523	-0.23345					36	19	3	0	0	0	0.845	1	401	401		55.504	0	1	263920			36486	6479	24976	25029	42149	42149					0.12906343439465218
KVREEIAEY	9	Unmodified	_KVREEIAEY_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.8008422851562	2	568.800946	1135.58734	-0.023048	-1.311E-05	-0.23314	-0.00013261	-0.25619	-0.00014572	568.8006789925213	33.948	0.85288	33.724	33.446	34.299	-0.22412					41	21	3	0	0	0	0.10464	1	2462	2462		109.48	18.702	1	767080			36487	3658	24977	25030	42150	42150					0.02496806780800398
KVREEIAEY	9	Unmodified	_KVREEIAEY_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.8008422851562	2	568.800946	1135.58734	-0.22036	-0.00012534	-0.21605	-0.00012289	-0.43641	-0.00024823	568.8007344676288	33.853	0.49813	33.653	33.404	33.902	-0.20019					29	12	3	0	0	0	0.30449	1	2443	2443		75.043	3.7476	1	953190			36488	3658	24977	25030	42151	42151					0.02496806780800398
KVREEIAEY	9	Unmodified	_KVREEIAEY_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	568.800946	1135.58734	-1.2627	-0.00071821	0.81209	0.00046192	-0.45058	-0.00025629	568.8013133151399	33.815	0.54237	33.639	33.43	33.972	-0.17557	-0.032712	0.00080925	NaN	109.48	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939360			36489	3658	24977	25030							0.02496806780800398
KVRFEEIA	8	Unmodified	_KVRFEEIA_					0	0	0		ADC-ISOC1|1|fusion;ENST00000492521.1_1_1:33560248-33562547:+|nuORF;nc|ENSG00000142920|Q96A70-3|AZIN2;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-4|AZIN2;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2	ADC-ISOC1|1|fusion;ENST00000478204.5_1_1:33557816-33585780:+|nuORF	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2503356933594	2	496.282192	990.549831	0.17691	8.7799E-05	2.1351	0.0010596	2.312	0.0011474	496.2830810293312	25.323	0.71508	25.152	24.821	25.536	-0.17151					28	16	2	0	0	0	0.027866	1	1141	1141		31.955	0	1	168170			36490	15135;30	24978	25031	42152	42152					0.05417760305851971
KVRFLKLK	8	Unmodified	_KVRFLKLK_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9;ABCA9|p.E860K|1|0.31|ENSG00000154258|chr17:69020410-69020410|C/T|missense_variant	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2703247070312	2	516.358037	1030.70152	-0.69711	-0.00035996	0.14063	7.2616E-05	-0.55647	-0.00028734	516.3578177268922	27.918	0.56168	27.75	27.57	28.132	-0.16816					23	13	2	0	0	0	0.027866	1	1631	1631		7.6903	3.705	1	98731			36491	6394	24979	25032	42153	42153					0.18739786124206148
KVRGEKALL	9	Unmodified	_KVRGEKALL_					0	0	0		nc|ENSG00000090686|Q86UV5-8|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-6|USP48;ENST00000464577.1_1_1:22013654-22030763:-|nuORF	nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2902526855469	2	507.326934	1012.63931	-0.93166	-0.00047266	0.29194	0.00014811	-0.63972	-0.00032455	507.3268304515221	43.38	0.47213	43.38	43.113	43.585	0					26	12	3	0	0	0	0.024344	1	4095	4095		45.972	19.176	1	284170			36492	18108	24980	25033	42154	42154					0.1335001498522388
KVRGGGLKLL	10	Unmodified	_KVRGGGLKLL_					0	0	0			REV__nc|ENSG00000105443|Q99418|CYTH2	REV__nc|ENSG00000105443|Q99418|CYTH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.318359375	2	520.850576	1039.6866	-0.70593	-0.00036768	0.66427	0.00034599	-0.041652	-2.1695E-05	520.8506925654383	60.298	0.62899	60.298	60.027	60.656	0					23	16	2	0	0	0	0.03519	1	6896	6896		44.117	6.9577	1	118050	+		36493	36542	24981	25034	42155	42155					0.16834294256227622
KVRGQSNPE	9	Unmodified	_KVRGQSNPE_					0	0	0			REV__ENST00000557789.5_1_15:64446752-64447019:+|nuORF	REV__ENST00000557789.5_1_15:64446752-64447019:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3200378417969	2	507.76998	1013.52541	-0.35941	-0.0001825	-3.9187	-0.0019898	-4.2781	-0.0021723	507.767924929927	73.501	0.26706	73.511	73.29	73.558	0.0096512					10	6	2	0	0	0	0.024418	1	8885	8885		30.318	3.6248	1	322870	+		36494	35080	24982	25035	42156	42156					0.019185001523283063
KVRGQSNPE	9	Unmodified	_KVRGQSNPE_					0	0	0			REV__ENST00000557789.5_1_15:64446752-64447019:+|nuORF	REV__ENST00000557789.5_1_15:64446752-64447019:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.76998	1013.52541	-0.4477	-0.00022733	-4.0047	-0.0020335	-4.4524	-0.0022608	507.76788126227575	73.465	0.36615	73.465	73.219	73.585	0	-0.023814	-7.0893E-05	NaN	30.318	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395610	+		36495	35080	24982	25035							0.019185001523283063
KVRGVLKT	8	Unmodified	_KVRGVLKT_					0	0	0		ENST00000546455.5_1_12:47473502-47610158:+|nuORF	ENST00000546455.5_1_12:47473502-47610158:+|nuORF	ENST00000546455.5_1_12:47473502-47610158:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.772216796875	2	450.803094	899.591636	0.57218	0.00025794	-0.49335	-0.0002224	0.078834	3.5539E-05	450.8027092425419	19.42	0.44479	19.26	19.084	19.529	-0.16079					21	8	4	0	0	0	0.027866	1	454	454		12.959	0	1	188720			36496	16511	24983	25036	42157	42157					0.13782360785035053
KVRIGDDLIL	10	Unmodified	_KVRIGDDLIL_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2872924804688	2	571.350606	1140.68666	-0.13415	-7.6645E-05	0.15734	8.9895E-05	0.02319	1.325E-05	571.3506446060024	65.662	0.37606	65.42	65.207	65.583	-0.24145					13	8	2	0	0	0	0.03519	1	7501	7501		35.618	8.9254	1	92466			36497	10221	24984	25037	42158	42158					0.12194249465574103
KVRIIGND	8	Unmodified	_KVRIIGND_					0	0	0			REV__ENST00000563368.5_1_15:75650962-75652298:-|nuORF;REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7456970214844	2	457.774534	913.534515	-0.36244	-0.00016592	0.39709	0.00018178	0.034652	1.5863E-05	457.77488503129763	26.053	0.58452	26.03	25.82	26.405	-0.023088					25	13	3	0	0	0	0.027866	1	1328	1328		20.947	0	1	195620	+		36498	35227;35222	24985	25038	42159	42159					0.07428893508654255
KVRIIGND	8	Unmodified	_KVRIIGND_					0	0	0			REV__ENST00000563368.5_1_15:75650962-75652298:-|nuORF;REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.774534	913.534515	-0.12658	-5.7944E-05	0.4602	0.00021067	0.33362	0.00015272	457.7745932809538	25.998	0.50401	25.998	25.779	26.283	0	0.0069747	-2.2154E-05	NaN	26.693	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172940	+		36499	35227;35222	24985	25038							0.07428893508654255
KVRIRPEQ	8	Unmodified	_KVRIRPEQ_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7911987304688	2	513.314358	1024.61416	-0.43645	-0.00022404	3.0482	0.0015647	2.6117	0.0013406	513.3148867544704	21.771	0.27898	21.681	21.499	21.778	-0.090092					6	5	2	0	0	0	0.027866	1	697	697		45.952	0	1	10962	+		36500	20567	24986	25039	42160	42160					0.10283960182641749
KVRKELTF	8	Unmodified	_KVRKELTF_					0	0	0			REV__ENSG00000118308|ENST00000556887|IRAG2	REV__ENSG00000118308|ENST00000556887|IRAG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2810363769531	2	510.813659	1019.61277	0.0056589	2.8907E-06	0.89247	0.00045589	0.89813	0.00045878	510.8131065383944	61.454	0.44156	61.228	60.974	61.415	-0.22663					17	11	2	0	0	0	0.027866	1	7110	7110		37.159	0	1	195560	+		36501	22398	24987	25040	42161	42161					0.10374326093881336
KVRLARIGE	9	Unmodified	_KVRLARIGE_					0	0	0		ENST00000587327.5_1_19:11546705-11546834:+|nuORF	ENST00000587327.5_1_19:11546705-11546834:+|nuORF	ENST00000587327.5_1_19:11546705-11546834:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7687377929688	2	521.330008	1040.64546	-0.055265	-2.8811E-05	3.7616	0.001961	3.7063	0.0019322	521.3317999626688	52.397	0.5126	52.213	51.963	52.475	-0.18404					28	12	3	0	0	0	0.024427	1	5455	5455		19.997	0	1	588870			36502	17267	24988	25041	42162	42162					0.12676533216745156
KVRLSPGPS	9	Unmodified	_KVRLSPGPS_					0	0	0		ENSG00000079432|ENST00000681038|CIC;CIC|p.A652Pfs*76|1|0.32|ENSG00000079432|chr19:42290717-42290717|C/-|frameshift_variant	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.7821350097656	2	470.782359	939.550165	1.8939	0.00089164	-1.8793	-0.00088472	0.014681	6.9113E-06	470.7813847344356	19.038	0.54381	18.805	18.582	19.126	-0.23345					24	10	3	0	0	0	0.39228	1	347	347		66.429	3.123	1	242210			36503	1664	24989	25042	42163	42163					0.07797180025715988
KVRLSTLTRNI	11	Unmodified	_KVRLSTLTRNI_					0	0	0			REV__nc|ENSG00000167984|Q7RTR2-3|NLRC3	REV__nc|ENSG00000167984|Q7RTR2-3|NLRC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	3	434.273499	1299.79867	-0.20564	-8.9306E-05	3.2583	0.001415	3.0527	0.0013257	434.27498364675216	46.522	0.53708	46.328	45.975	46.512	-0.19387					29	14	3	0	0	0	0.024808	1	4500	4500		39.873	23.156	1	239090	+		36504	36901	24990	25043	42164	42164					0.16076103542559395
KVRPQSRKNER	11	Unmodified	_KVRPQSRKNER_					0	0	0			REV__ENSG00000139218|ENST00000369367|SCAF11	REV__ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.6075744628906	3	466.607652	1396.80113	0.0065047	3.0352E-06	0.34479	0.00016088	0.35129	0.00016392	466.60759932614815	98.334	2.2102	98.334	97.058	99.268	0					122	50	3	0	0	0	1.0834	1	12484	12484		15.921	1.1418	1	497500	+		36505	23928	24991	25044	42165	42165					0.11859952000190788
KVRPSASRY	9	Unmodified	_KVRPSASRY_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.3040771484375	2	532.30399	1062.59343	1.2315	0.00065555	-0.70606	-0.00037584	0.52546	0.00027971	532.3031908757719	19.484	0.6431	19.25	19.027	19.67	-0.23345					36	12	4	0	0	0	0.6238	1	399	399		51.193	7.0759	1	485820			36506	18259;18260	24992	25045	42166	42166					0.06463369802986563
KVRPSASRY	9	Unmodified	_KVRPSASRY_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;ENST00000261509.10_1_4:169846154-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	532.30399	1062.59343	0.34343	0.00018281	0.12571	6.6917E-05	0.46914	0.00024973	532.3036676970412	19.529	0.59543	19.329	19.106	19.701	-0.2001	0.066439	0.00026669	NaN	51.193	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471830			36507	18259;18260	24992	25045							0.06463369802986563
KVRREITF	8	Unmodified	_KVRREITF_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2673950195312	2	524.816733	1047.61891	-1.1338	-0.00059506	0.67578	0.00035466	-0.45806	-0.0002404	524.8169317888704	45.134	0.65128	45.134	44.862	45.514	0					39	18	3	0	0	0	0.027866	1	4426	4426		40.573	0	1	851880	+		36508	20103	24993	25046	42167	42167					0.09700844325379876
KVRRLEGR	8	Unmodified	_KVRRLEGR_					0	0	0			REV__ENST00000355379.3_1_1:155231889-155232135:-|nuORF	REV__ENST00000355379.3_1_1:155231889-155232135:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2879333496094	2	507.319974	1012.6254	-0.12196	-6.1871E-05	1.0824	0.0005491	0.9604	0.00048723	507.320215640066	61.518	0.6361	61.589	61.355	61.991	0.071125					23	16	2	0	0	0	0.027866	1	7095	7095		35.618	11.416	1	277750	+		36509	30774	24994	25047	42168	42168					0.1195878227679259
KVRRLHYE	8	Unmodified	_KVRRLHYE_					0	0	0		ENST00000491811.5_1_1:68608485-68620847:-|nuORF;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.816162109375	2	550.819807	1099.62506	-0.61531	-0.00033893	3.3265	0.0018323	2.7112	0.0014934	550.8213054398376	93.306	0.37975	93.314	93.055	93.435	0.0077209					15	8	2	0	0	0	0.027866	1	11777	11777		40.573	0	1	67684			36510	3571	24995	25048	42169	42169					0.07923362556925895
KVRTEKETI	9	Unmodified	_KVRTEKETI_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.32421875	2	552.324588	1102.63462	-0.6334	-0.00034984	0.28369	0.00015669	-0.34972	-0.00019316	552.3246435619972	19.911	0.61967	19.804	19.507	20.127	-0.10678					33	12	4	0	0	0	0.42604	1	473	473		64.207	16.248	1	323840			36511	1102	24996	25049	42170	42170					0.08741086051804814
KVRTEKETI	9	Unmodified	_KVRTEKETI_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.3241577148438	2	552.324588	1102.63462	1.7938	0.00099078	-2.4192	-0.0013362	-0.62532	-0.00034538	552.3231170677104	19.784	0.82467	19.851	19.637	20.462	0.066195					35	16	4	0	0	0	0.29158	1	427	427		76.774	7.1465	1	296550			36512	1102	24996	25049	42171	42171					0.08741086051804814
KVRTEKETI	9	Unmodified	_KVRTEKETI_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.3245849609375	2	552.324588	1102.63462	-0.077194	-4.2636E-05	-0.17849	-9.8583E-05	-0.25568	-0.00014122	552.3244866283704	20.034	0.62701	19.867	19.669	20.296	-0.16774					40	12	5	0	0	0	0.17822	1	492	492		93.195	13.483	1	1312500			36513	1102	24996	25049	42172	42172					0.08741086051804814
KVRTQAELENL	11	Unmodified	_KVRTQAELENL_					0	0	0			REV__nc|ENSG00000126012|P41229-2|KDM5C;REV__nc|ENSG00000012817|Q9BY66-2|KDM5D;REV__ENSG00000117139|ENST00000367265|KDM5B	REV__nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801208496094	3	434.245498	1299.71466	-0.30698	-0.0001333	1.191	0.0005172	0.88405	0.0003839	434.2459773803031	38.69	0.77984	38.592	38.238	39.018	-0.098755					45	20	4	0	0	0	0.024751	1	3218	3218		21.78	7.0868	1	161510	+		36514	22876;19947;22327	24997	25050	42173	42173					0.07679527655000129
KVRVELLY	8	Unmodified	_KVRVELLY_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7641296386719	2	510.316035	1018.61752	-0.64211	-0.00032768	-0.10128	-5.1686E-05	-0.7434	-0.00037937	510.31594097911034	25.934	0.37626	25.698	25.467	25.843	-0.23603					12	8	2	0	0	0	0.027866	1	1272	1272		45.952	5.3793	1	70541		+	36515	548	24998	25051	42174	42174					0.10895210236651565
KVRVIKLSG	9	Unmodified	_KVRVIKLSG_					0	0	0		ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENSG00000184863|ENST00000401878|RBM33	ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3082275390625	2	500.337301	998.66005	-1.6217	-0.00081138	1.2478	0.00062433	-0.37384	-0.00018704	500.3377226718895	21.552	0.33994	21.339	21.118	21.458	-0.2128					15	6	3	0	0	0	0.024495	1	659	659		26.693	0	1	96721			36516	9375	24999	25052	42175	42175					0.1606660536489244
KVSAVKIDL	9	Unmodified	_KVSAVKIDL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2507019042969	2	486.808042	971.601532	-0.75148	-0.00036583	-0.33559	-0.00016337	-1.0871	-0.00052919	486.8076970660077	33.307	0.41737	33.314	33.08	33.498	0.0066261					19	11	2	0	0	0	0.024495	1	2380	2380		26.693	13.734	1	157550			36517	1059	25000	25053	42176	42176					0.11459503999765275
KVSDASTKL	9	Unmodified	_KVSDASTKL_					0	0	0			REV__ENST00000357155.1_1_1:109837903-109840046:-|nuORF	REV__ENST00000357155.1_1_1:109837903-109840046:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.7732849121094	2	474.771657	947.528761	0.72498	0.0003442	3.2776	0.0015561	4.0026	0.0019003	474.77314857512465	99.207	1.1754	99.203	98.724	99.899	-0.0038757					63	26	3	0	0	0	0.85329	1	12648	12648		35.618	7.364	1	2143100	+		36518	30820	25001	25054	42177	42177					0.05289750206316057
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2890625	2	451.289485	900.564418	0.52185	0.0002355	-0.31661	-0.00014288	0.20524	9.2621E-05	451.28921133832375	55.883	0.96076	55.883	55.39	56.351	0					61	26	4	0	0	0	0.28753	1	6203	6203		77.318	0.54344	1	2334500			36519	2485	25002	25055	42178	42178					0.11015832454006613
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2899169921875	2	451.289485	900.564418	0.021392	9.6542E-06	0.18404	8.3055E-05	0.20543	9.2709E-05	451.289445786457	55.996	1.0647	55.84	55.293	56.358	-0.15601					68	28	4	0	0	0	0.17845	1	6184	6184		93.143	20.264	1	2370800			36520	2485	25002	25055	42179	42179					0.11015832454006613
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2893981933594	2	451.289485	900.564418	-0.70979	-0.00032032	0.97199	0.00043865	0.2622	0.00011833	451.2897892192185	55.743	1.0648	55.841	55.294	56.359	0.098015					69	28	4	0	0	0	0.2101	1	6097	6097		87.696	10.922	1	2291800			36521	2485	25002	25055	42180	42180					0.11015832454006613
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.289485	900.564418	-1.1386	-0.00051383	1.2915	0.00058284	0.15291	6.9006E-05	451.28997751469205	55.98	0.35937	55.765	55.602	55.961	-0.21551	-0.067255	0.00074938	NaN	93.143	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94077			36522	2485	25002	25055							0.11015832454006613
KVSINIAIK	9	Unmodified	_KVSINIAIK_					0	0	0		ENST00000426028.2_1_9:29824858-29825224:-|nuORF	ENST00000426028.2_1_9:29824858-29825224:-|nuORF	ENST00000426028.2_1_9:29824858-29825224:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7719421386719	2	493.32386	984.633166	0.13058	6.4419E-05	-1.2888	-0.0006358	-1.1582	-0.00057138	493.32329905418214	32.823	0.31204	32.886	32.69	33.002	0.062889					14	7	2	0	0	0	0.024495	1	2278	2278		34.173	7.4796	1	112270			36523	14077	25003	25056	42181	42181					0.14023496753679865
KVSIQMPTI	9	Unmodified	_KVSIQMPTI_					0	0	0		ENSG00000254004|ENST00000523638|ZNF260	ENSG00000254004|ENST00000523638|ZNF260	ENSG00000254004|ENST00000523638|ZNF260	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3261413574219	2	508.794078	1015.5736	0.72907	0.00037094	0.23086	0.00011746	0.95993	0.00048841	508.79361191436817	77.669	0.65672	77.427	77.041	77.698	-0.24232					26	15	2	0	0	0	0.024323	1	9268	9268		44.117	0	1	348290			36524	10873	25004	25057	42182	42182					0.06643857748031223
KVSKFTDLE	9	Unmodified	_KVSKFTDLE_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-2|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-2|ODF2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.796630859375	2	533.792589	1065.57063	-1.5754	-0.00084095	4.4665	0.0023842	2.8911	0.0015432	533.7946877989222	91.336	1.9135	91.336	91.011	92.924	0					94	45	4	0	0	0	0.28753	1	11598	11598		77.318	6.0219	1	3598600	+		36525	36622	25005	25058	42183	42183					0.04046305894826219
KVSKKKLI	8	Unmodified	_KVSKKKLI_					0	0	0			REV__ENSG00000236032|ENST00000641380|OR5H14	REV__ENSG00000236032|ENST00000641380|OR5H14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.28790283203125	2	472.33677	942.658987	0.59004	0.0002787	0.70541	0.00033319	1.2954	0.00061189	472.3374176907693	94.186	0.43643	94.186	94.007	94.444	0					14	10	2	0	0	0	0.027866	1	12014	12014		3.41	0	1	168380	+		36526	28930	25006	25059	42184	42184					0.18536390995984675
KVSKKKLI	8	Unmodified	_KVSKKKLI_					0	0	0			REV__ENSG00000236032|ENST00000641380|OR5H14	REV__ENSG00000236032|ENST00000641380|OR5H14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.33677	942.658987	-0.33978	-0.00016049	5.1869	0.0024499	4.8471	0.0022895	472.3395368349922	94.454	0.20523	94.307	94.249	94.454	-0.14771	0.060223	0.0031197	NaN	3.41	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106700	+		36527	28930	25006	25059							0.18536390995984675
KVSKSKRQGI	10	Unmodified	_KVSKSKRQGI_					0	0	0			REV__ENST00000554972.1_1_14:76349147-76373016:+|nuORF	REV__ENST00000554972.1_1_14:76349147-76373016:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8316040039062	2	565.853847	1129.69314	-1.1116	-0.00062898	1.534	0.000868	0.4224	0.00023902	566.3559311439944	53.851	0.24839	53.715	53.531	53.779	-0.13616					12	7	2	0	0	0	0.03519	1	5648	5648		24.519	0	1	163600	+		36528	34999	25007	25060	42185	42185					0.13348187416954715
KVSLGFAF	8	Unmodified	_KVSLGFAF_					0	0	0		ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77984619140625	2	434.749996	867.485439	0.51763	0.00022504	0.63529	0.00027619	1.1529	0.00050124	434.74958606657424	39.969	0.40405	39.969	39.808	40.212	0					15	10	2	0	0	0	0.027866	1	3500	3500		31.955	0	1	114050			36529	13630	25008	25061	42186	42186					0.04639605219699661
KVSLIERL	8	Unmodified	_KVSLIERL_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2953796386719	2	479.30821	956.601866	2.274	0.0010899	-2.4393	-0.0011692	-0.1653	-7.9231E-05	479.306894895138	24.586	0.65128	24.405	24.072	24.723	-0.18089					32	14	3	0	0	0	0.027866	1	1017	1017		102.77	17.858	1	343230			36530	4109	25009	25062	42187	42187					0.12182923719615246
KVSLLKALL	9	Unmodified	_KVSLLKALL_					0	0	0		nc|ENSG00000163681|Q14BN4-8|SLMAP	nc|ENSG00000163681|Q14BN4-8|SLMAP	nc|ENSG00000163681|Q14BN4-8|SLMAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7794494628906	2	492.844428	983.674303	0.16332	8.0492E-05	-0.59777	-0.00029461	-0.43444	-0.00021411	492.84419717035564	57.699	0.37712	57.509	57.259	57.636	-0.19018					20	9	3	0	0	0	0.024319	1	6306	6306		39.253	1.4413	1	172870			36531	18450	25010	25063	42188	42188					0.18181257793185068
KVSLLTLLL	9	Unmodified	_KVSLLTLLL_					0	0	0			REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3132019042969	2	500.344261	998.673968	-0.26086	-0.00013052	2.988	0.001495	2.7272	0.0013645	500.34377428826974	76.243	0.47896	75.973	75.815	76.294	-0.26956					18	11	2	0	0	0	0.024427	1	9055	9055		42.396	5.237	1	131870	+		36532	23200	25011	25064	42189	42189					0.17457838073335097
KVSLPPSEGTD	11	Unmodified	_KVSLPPSEGTD_					0	0	0		nc|ENSG00000122477|Q96DD0-2|LRRC39;ENSG00000122477|ENST00000370137|LRRC39	nc|ENSG00000122477|Q96DD0-2|LRRC39	nc|ENSG00000122477|Q96DD0-2|LRRC39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.22705078125	2	565.290411	1128.56627	-1.0086	-0.00057014	0.026072	1.4738E-05	-0.9825	-0.0005554	565.2902733636892	37.455	0.35352	37.236	37.076	37.429	-0.2195					12	8	2	0	0	0	0.024753	1	3000	3000		38.754	24.616	1	68038			36533	18229	25012	25065	42190	42190					0.007127966812731756
KVSLRARR	8	Unmodified	_KVSLRARR_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1;REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.772216796875	2	493.322517	984.630481	-0.45953	-0.00022669	2.5122	0.0012393	2.0527	0.0010127	493.32373847168157	32.951	0.42293	32.951	32.79	33.213	0					15	10	2	0	0	0	0.027866	1	2358	2358		47.916	13.743	1	113030	+		36534	24428;36753	25013	25066	42191	42191					0.13755086139406103
KVSLSNVLE	9	Unmodified	_KVSLSNVLE_					0	0	0			REV__nc|ENSG00000179456|Q99592|ZBTB18	REV__nc|ENSG00000179456|Q99592|ZBTB18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7839660644531	2	494.787307	987.560061	-0.40307	-0.00019943	-2.1959	-0.0010865	-2.5989	-0.0012859	494.78541855198455	32.696	0.90815	32.459	32.042	32.95	-0.23666					61	21	5	0	0	0	0.48817	1	2299	2299		60.118	5.3419	1	2868900	+		36535	27269	25014	25067	42192	42192					0.06578323240432837
KVSMEGHLY	9	Oxidation (M)	_KVSM(Oxidation (M))EGHLY_		KVSM(1)EGHLY		KVSM(77)EGHLY	0	0	1		ENST00000490583.5_1_22:20040979-20049207:+|nuORF;ENST00000485715.2_1_22:20024321-20049197:+|nuORF;ENST00000484373.5_1_22:20024321-20041279:+|nuORF;nc|ENSG00000183597|Q6ICL3-6|TANGO2;nc|ENSG00000183597|Q6ICL3-3|TANGO2;ENSG00000183597|ENST00000327374|TANGO2;nc|ENSG00000183597|Q6ICL3-4|TANGO2	ENST00000490583.5_1_22:20040979-20049207:+|nuORF	ENST00000490583.5_1_22:20040979-20049207:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.2613525390625	2	540.263142	1078.51173	-0.47419	-0.00025619	-2.4808	-0.0013403	-2.955	-0.0015965	540.2616818357362	61.894	0.79347	61.681	61.375	62.168	-0.21375					72	19	5	0	0	0	0.29104	1	6938	6938		76.847	8.3619	1	4715900			36536	9248	25015	25068	42193	42193		387			-0.024384936711157934
KVSNPKKLLP	10	Unmodified	_KVSNPKKLLP_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3529052734375	2	562.363516	1122.71248	-0.84941	-0.00047768	-2.7374	-0.0015394	-3.5868	-0.0020171	562.36176829605	105.62	0.38317	105.49	105.35	105.73	-0.13099					20	13	2	0	0	0	1.1237	1	13161	13161		23.042	1.0826	1	165340	+		36537	36627	25016	25069	42194	42194					0.1560314370785818
KVSNSGITRV	10	Unmodified	_KVSNSGITRV_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;ENST00000461540.2_1_2:62096624-62104153:-|nuORF	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.8082275390625	2	530.809105	1059.60366	-1.1704	-0.00062126	0.88414	0.00046931	-0.28626	-0.00015195	530.809483176804	25.849	0.55495	25.849	25.569	26.124	0					40	12	5	0	0	0	0.52143	1	1269	1269		85.862	24.89	1	545770			36538	3453	25017	25070	42195	42195					0.0762393273755606
KVSNSGITRV	10	Unmodified	_KVSNSGITRV_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4;ENST00000461540.2_1_2:62096624-62104153:-|nuORF	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.80810546875	2	530.809105	1059.60366	-0.91854	-0.00048757	0.55172	0.00029286	-0.36682	-0.00019471	530.8092644046237	25.877	0.4739	25.854	25.609	26.083	-0.023087					31	10	4	0	0	0	0.91448	1	1257	1257		53.089	0	1	582200			36539	3453	25017	25070	42196	42196					0.0762393273755606
KVSNTNKRP	9	Unmodified	_KVSNTNKRP_					0	0	0			REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7645874023438	2	522.301447	1042.58834	-0.59023	-0.00030828	-1.5052	-0.00078617	-2.0954	-0.0010944	522.3002168690493	35.788	0.23372	35.832	35.699	35.933	0.04406					7	5	2	0	0	0	0.024405	1	2725	2725		44.117	23.17	1	44683	+		36540	23883	25018	25071	42197	42197					0.06875065940357672
KVSQAFIW	8	Unmodified	_KVSQAFIW_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.7738037109375	2	489.774003	977.533452	-0.9241	-0.0004526	1.0286	0.00050379	0.10452	5.1193E-05	489.77427240476146	65.741	0.98141	65.528	65.135	66.117	-0.21327					64	23	4	0	0	0	0.56592	1	7537	7537		79.451	0	1	2575700	+		36541	20514	25019	25072	42198	42198					0.04378679139745145
KVSQAFIW	8	Unmodified	_KVSQAFIW_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.7738342285156	2	489.774003	977.533452	-0.21579	-0.00010569	0.53822	0.00026361	0.32243	0.00015792	489.77397660241695	65.795	1.0452	65.544	65.189	66.234	-0.25112					59	25	4	0	0	0	0.6248	1	7509	7509		73.975	0	1	2256300	+		36542	20514	25019	25072	42199	42199					0.04378679139745145
KVSQDHFLD	9	Unmodified	_KVSQDHFLD_					0	0	0			REV__nc|ENSG00000118961|Q9H6V9-3|LDAH	REV__nc|ENSG00000118961|Q9H6V9-3|LDAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8138427734375	2	544.772188	1087.52982	-0.87027	-0.0004741	-3.1717	-0.0017279	-4.042	-0.002202	544.770329673134	93.033	1.3902	93.041	92.341	93.732	0.0077286					53	32	2	0	0	0	0.024263	1	11780	11780		51.335	1.7994	1	70173	+		36543	22432	25020	25073	42200	42200					-0.010440354247748473
KVSRRKIK	8	Unmodified	_KVSRRKIK_					0	0	0			REV__nc|ENSG00000266074|Q9P281|BAHCC1	REV__nc|ENSG00000266074|Q9P281|BAHCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.8133544921875	2	507.848368	1013.68218	-0.36127	-0.00018347	-1.8969	-0.00096334	-2.2582	-0.0011468	507.8458610977626	93.073	0.33801	93.073	92.881	93.219	0					10	7	2	0	0	0	0.027866	1	11805	11805		3.6843	0	1	37366	+		36544	37192	25021	25074	42201	42201					0.1758882983330068
KVSSYATL	8	Unmodified	_KVSSYATL_					0	0	0		nc|ENSG00000126216|Q96CW5-3|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7800598144531	2	434.742368	867.470183	-0.63478	-0.00027597	4.0569	0.0017637	3.4221	0.0014877	434.7447507614222	38.258	0.13849	38.175	38.116	38.254	-0.082512					5	3	2	0	0	0	0.027866	1	3183	3183		31.955	5.1588	1	22842			36545	4182	25022	25075	42202	42202					0.031146936318464213
KVSTKGKGRRH	11	Unmodified	_KVSTKGKGRRH_					0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	626.39404296875	2	627.381094	1252.74764	0.58396	0.00036637	1.5383	0.00096512	2.1223	0.0013315	627.3818871557593	110.55	0.41436	110.54	110.34	110.75	-0.011299					31	14	3	0	0	0	0.024808	1	13961	13961		12.812	2.5465	1	7432300			36546	6588	25023	25076	42203	42203					0.13137199288371448
KVSTKGKGRRH	11	Unmodified	_KVSTKGKGRRH_					0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	627.381094	1252.74764	-0.17413	-0.00010925	1.6726	0.0010494	1.4985	0.00094013	627.3820106087511	110.71	0.52884	110.59	110.51	111.04	-0.12525	-0.07362	4.8059E-05	NaN	12.812	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5899300			36547	6588	25023	25076							0.13137199288371448
KVSTKGKGRRH	11	Unmodified	_KVSTKGKGRRH_					0	0	0		ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	ENSG00000157259|ENST00000287957|GATAD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	627.381094	1252.74764	0.50809	0.00031876	1.6626	0.0010431	2.1707	0.0013619	627.3821384847324	111	0.095543	110.85	110.81	110.91	-0.1469	0.19138	3.548E-05	NaN	12.812	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9820.7			36548	6588	25023	25076							0.13137199288371448
KVSTNKAGLQ	10	Unmodified	_KVSTNKAGLQ_					0	0	0		nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	nc|ENSG00000173744|P52594-2|AGFG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.307861328125	2	523.303655	1044.59276	0.31586	0.00016529	-0.64639	-0.00033826	-0.33052	-0.00017296	523.3032602236889	21.294	0.68341	21.103	20.784	21.468	-0.19072					38	13	4	0	0	0	0.94316	1	657	657		51.193	0	1	1114100			36549	8407	25024	25077	42204	42204					0.07224530363282611
KVSVERPA	8	Unmodified	_KVSVERPA_					0	0	0			REV__ENST00000582809.5_2_17:60536048-60558487:+|nuORF	REV__ENST00000582809.5_2_17:60536048-60558487:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2794189453125	2	443.261259	884.507966	0.1224	5.4256E-05	-0.29349	-0.00013009	-0.17109	-7.5837E-05	443.26100045282794	54.671	0.29021	54.769	54.626	54.916	0.098011					13	7	3	0	0	0	0.027866	1	5920	5920		26.796	0	1	67731	+		36550	35545	25025	25078	42205	42205					0.0610920461731439
KVTALQGVTW	10	Unmodified	_KVTALQGVTW_					0	0	0		ENST00000588784.1_1_19:28285540-28285834:+|nuORF	ENST00000588784.1_1_19:28285540-28285834:+|nuORF	ENST00000588784.1_1_19:28285540-28285834:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7828979492188	2	551.816399	1101.61824	-0.39457	-0.00021773	1.1851	0.00065397	0.79055	0.00043624	551.8170200943321	41.687	0.42273	41.457	41.157	41.58	-0.2303					17	10	2	0	0	0	0.03519	1	3673	3673		18.262	0	1	330580			36551	17292	25026	25079	42206	42206					0.07150004885693306
KVTDIIVSF	9	Unmodified	_KVTDIIVSF_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.30108642578125	2	511.30005	1020.58555	0.067677	3.4603E-05	0.32238	0.00016483	0.39006	0.00019944	511.30009092346836	70.698	1.244	70.426	70.232	71.476	-0.27185					74	31	3	0	0	0	0.013924	5	8237	8229;8237;8246;8258;8274		167.23	76.859	1	5750000			36552	2661	25027	25080	42207;42208;42209;42210;42211	42208					0.07607797762852897
KVTDIIVSF	9	Unmodified	_KVTDIIVSF_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2989807128906	2	511.30005	1020.58555	-0.15666	-8.0103E-05	0.51568	0.00026367	0.35901	0.00018356	511.30022121556567	70.655	1.3098	70.398	70.137	71.446	-0.25712					83	33	3	0	0	0	0.030064	6	8245	8219;8228;8236;8245;8253;8262		141.52	48.325	1	6790700			36553	2661	25027	25080	42212;42213;42214;42215;42216;42217	42215					0.07607797762852897
KVTDIIVSF	9	Unmodified	_KVTDIIVSF_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.3001708984375	2	511.30005	1020.58555	0.3554	0.00018172	0.016765	8.5718E-06	0.37216	0.00019029	511.2998910871758	70.589	1.3176	70.375	70.056	71.374	-0.21425					86	33	3	0	0	0	0.030064	5	8206	8198;8206;8216;8226;8236		141.52	56.605	1	3900700			36554	2661	25027	25080	42218;42219;42220;42221;42222	42219					0.07607797762852897
KVTELLRTF	9	Unmodified	_KVTELLRTF_					0	0	0		nc|ENSG00000076944|Q15833-3|STXBP2;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.831787109375	2	553.832049	1105.64954	0.14119	7.8196E-05	-0.26972	-0.00014938	-0.12853	-7.1184E-05	553.8318104679595	53.03	0.9594	52.903	52.511	53.471	-0.12705					68	24	4	0	0	0	0.014738	3	5531	5520;5531;5544		163.15	56.143	1	4378000			36555	18085	25028	25081	42223;42224;42225	42224					0.10094577919812764
KVTELLRTF	9	Unmodified	_KVTELLRTF_					0	0	0		nc|ENSG00000076944|Q15833-3|STXBP2;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.831787109375	2	553.832049	1105.64954	0.30278	0.00016769	-0.71189	-0.00039427	-0.40912	-0.00022658	553.8315826808861	53.227	0.80059	52.968	52.644	53.444	-0.25838					65	20	4	0	0	0	0.014738	3	5554	5543;5554;5567		163.15	67.117	1	4692100			36556	18085	25028	25081	42226;42227;42228	42227					0.10094577919812764
KVTELLRTF	9	Unmodified	_KVTELLRTF_					0	0	0		nc|ENSG00000076944|Q15833-3|STXBP2;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8313598632812	2	553.832049	1105.64954	-0.11415	-6.3221E-05	-0.31166	-0.00017261	-0.42581	-0.00023583	553.8317807038381	53.077	1.1661	52.887	52.551	53.717	-0.18982					74	31	4	0	0	0	0.041068	3	5537	5526;5537;5548		132.76	50.517	1	6091000			36557	18085	25028	25081	42229;42230;42231	42230					0.10094577919812764
KVTFEGPLLN	10	Unmodified	_KVTFEGPLLN_					0	0	0		ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1	ENST00000382162.7_1_22:32002284-32014401:+|nuORF	ENST00000382162.7_1_22:32002284-32014401:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.31787109375	2	559.316232	1116.61791	-1.5127	-0.00084606	4.0018	0.0022382	2.4891	0.0013922	559.318304294723	65.193	0.75658	64.931	64.65	65.406	-0.2626					36	20	2	0	0	0	0.61732	1	7671	7671		75.043	3.1658	1	2199600			36558	10094	25029	25082	42232	42232					0.06426585165877441
KVTHSRSHII	10	Unmodified	_KVTHSRSHII_					0	0	0			REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF	REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.343646	1176.67274	-0.33817	-0.0001993	-1.0615	-0.00062561	-1.3997	-0.0008249	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.118	1	11090	11090		30.318	2.4355	1	6196800	+		36559	34335	25030	25083	42233	42233					0.09147016757151505
KVTISPQLL	9	Unmodified	_KVTISPQLL_					0	0	0		ENST00000465224.5_1_2:97490916-97493694:+|nuORF;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3	ENST00000465224.5_1_2:97490916-97493694:+|nuORF	ENST00000465224.5_1_2:97490916-97493694:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.80596923828125	2	499.815867	997.617182	-0.17849	-8.921E-05	-0.26147	-0.00013068	-0.43995	-0.00021989	499.81585197028767	59.706	0.40531	59.791	59.501	59.906	0.085686					13	10	2	0	0	0	0.024359	1	6748	6748		47.96	15.147	1	215250			36560	7858	25031	25084	42234	42234					0.11827790516804271
KVTKASNEAD	10	Unmodified	_KVTKASNEAD_					0	0	0			REV__ALMS1|p.L2259V|1|0.15|ENSG00000116127|chr2:73453302-73453302|C/G|missense_variant	REV__ALMS1|p.L2259V|1|0.15|ENSG00000116127|chr2:73453302-73453302|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7758178710938	2	531.774928	1061.5353	-0.26972	-0.00014343	0.26377	0.00014027	-0.0059518	-3.165E-06	531.7752879999998	106.43	0.76709	106.43	106.09	106.86	-0.0013123					50	25	3	0	0	0	1.0816	1	13603	13603		35.152	2.3396	1	614130	+		36561	19107	25032	25085	42235	42235					0.006996433670337865
KVTKQVPK	8	Unmodified	_KVTKQVPK_					0	0	0			REV__ENSG00000106546|ENST00000242057|AHR	REV__ENSG00000106546|ENST00000242057|AHR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.27984619140625	2	464.302927	926.591301	0.010485	4.8682E-06	0.041535	1.9285E-05	0.05202	2.4153E-05	464.30272590029114	40.468	0.55412	40.468	40.281	40.835	0					29	15	3	0	0	0	0.027866	1	3591	3591		15.642	0	1	549590	+		36562	21626	25033	25086	42236	42236					0.125069410651804
KVTKVGISK	9	Unmodified	_KVTKVGISK_					0	0	0			REV__nc|ENSG00000182973|Q9H9A5-6|CNOT10	REV__nc|ENSG00000182973|Q9H9A5-6|CNOT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29193115234375	2	480.316035	958.617516	-0.14621	-7.0226E-05	3.6778	0.0017665	3.5316	0.0016963	480.3179944034051	56.109	0.2406	55.952	55.894	56.135	-0.15656					8	5	2	0	0	0	0.024511	1	6082	6082		25.574	8.2091	1	254330	+		36563	37000	25034	25087	42237	42237					0.13655210236663606
KVTLAVWSL	9	Unmodified	_KVTLAVWSL_					0	0	0			REV__ENSG00000127561|ENST00000248121|SYNGR3	REV__ENSG00000127561|ENST00000248121|SYNGR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.80877685546875	2	508.810585	1015.60662	-0.056961	-2.8983E-05	-4.1973	-0.0021356	-4.2543	-0.0021646	508.8083476553756	61.527	0.50066	61.313	61.001	61.501	-0.21375					37	11	4	0	0	0	0.16468	2	6882	6882;6895		96.19	2.5191	1	3973100	+		36564	22939	25035	25088	42238;42239	42238					0.09943807862362064
KVTLAVWSL	9	Unmodified	_KVTLAVWSL_					0	0	0			REV__ENSG00000127561|ENST00000248121|SYNGR3	REV__ENSG00000127561|ENST00000248121|SYNGR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.8089599609375	2	508.810585	1015.60662	-0.50536	-0.00025713	-3.7341	-0.0019	-4.2395	-0.0021571	508.8085515152474	61.537	0.6194	61.279	60.927	61.547	-0.25725					44	14	4	0	0	0	0.17822	1	6887	6887		93.195	0	1	4171100	+		36565	22939	25035	25088	42240	42240					0.09943807862362064
KVTLAVWSL	9	Unmodified	_KVTLAVWSL_					0	0	0			REV__ENSG00000127561|ENST00000248121|SYNGR3	REV__ENSG00000127561|ENST00000248121|SYNGR3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	508.810585	1015.60662	-0.056961	-2.8983E-05	-4.1973	-0.0021356	-4.2543	-0.0021646	508.8083476553756	61.527	0.50066	61.313	61.001	61.501	-0.21375	0.067172	-0.00021221	NaN	96.19	37	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3973100	+		36566	22939	25035	25088							0.09943807862362064
KVTLAVWSL	9	Unmodified	_KVTLAVWSL_					0	0	0			REV__ENSG00000127561|ENST00000248121|SYNGR3	REV__ENSG00000127561|ENST00000248121|SYNGR3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	508.810585	1015.60662	-0.50536	-0.00025713	-3.7341	-0.0019	-4.2395	-0.0021571	508.8085515152474	61.537	0.6194	61.279	60.927	61.547	-0.25725	0.033661	0.00025912	NaN	96.19	44	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4171100	+		36567	22939	25035	25088							0.09943807862362064
KVTLELKPL	9	Unmodified	_KVTLELKPL_					0	0	0		ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20763469-20774096:-|nuORF	ENSG00000136319|ENST00000258821|TTC5	ENSG00000136319|ENST00000258821|TTC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2890625	2	520.839342	1039.66413	-1.1521	-0.00060004	0.86279	0.00044937	-0.28927	-0.00015067	520.8398330658172	62.96	0.41919	62.96	62.811	63.23	0					14	10	2	0	0	0	0.024466	1	7323	7323		39.253	14.734	1	250280			36568	5009	25036	25089	42241	42241					0.14588650067935305
KVTLELKPL	9	Unmodified	_KVTLELKPL_					0	0	0		ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20763469-20774096:-|nuORF	ENSG00000136319|ENST00000258821|TTC5	ENSG00000136319|ENST00000258821|TTC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.839342	1039.66413	-0.32007	-0.00016671	0.28748	0.00014973	-0.032596	-1.6977E-05	520.839341339123	63.247	0.38362	63.007	62.821	63.204	-0.23926	0.0060633	0.00011957	NaN	47.657	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241930			36569	5009	25036	25089							0.14588650067935305
KVTLTNLIS	9	Unmodified	_KVTLTNLIS_					0	0	0		ENSG00000108556|ENST00000649488|CHRNE	ENSG00000108556|ENST00000649488|CHRNE	ENSG00000108556|ENST00000649488|CHRNE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.791748046875	2	494.8055	987.596446	-0.35284	-0.00017459	1.6033	0.00079333	1.2505	0.00061874	494.8060679400661	35.356	1.3307	35.356	34.479	35.81	0					72	34	3	0	0	0	0.024319	1	2628	2628		66.429	11.653	1	440990			36570	2907	25037	25090	42242	42242					0.10215200137145075
KVTLTNLIS	9	Unmodified	_KVTLTNLIS_					0	0	0		ENSG00000108556|ENST00000649488|CHRNE	ENSG00000108556|ENST00000649488|CHRNE	ENSG00000108556|ENST00000649488|CHRNE	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.8055	987.596446	-0.46014	-0.00022768	1.6572	0.00082001	1.1971	0.00059233	494.8061289270212	35.19	1.459	35.234	34.323	35.782	0.04406	-0.0095324	-0.00010573	NaN	66.429	80	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427760			36571	2907	25037	25090							0.10215200137145075
KVTLWKESV	9	Unmodified	_KVTLWKESV_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3164672851562	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.84115	1	10657	10657		36.447	0	1	4936700			36572	6568	25038	25091	42243	42243					0.08222889028456848
KVTNILEQI	9	Unmodified	_KVTNILEQI_					0	0	0			REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	REV__nc|ENSG00000197959|Q9UQ16-5|DNM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2783813476562	2	529.316232	1056.61791	-0.1628	-8.617E-05	0.27439	0.00014524	0.1116	5.907E-05	529.3165372940417	69.473	0.41231	69.25	69.02	69.432	-0.22245					23	9	3	0	0	0	0.023842	1	8072	8072		67.494	30.335	1	490870	+		36573	28368	25039	25092	42244	42244					0.09186585165844008
KVTQDLKL	8	Unmodified	_KVTQDLKL_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.79266357421875	2	472.792392	943.570232	1.44	0.00068082	-1.5522	-0.00073385	-0.11215	-5.3023E-05	472.7914592277908	55.409	0.60138	55.409	55.149	55.75	0					37	16	3	0	0	0	0.5947	1	6118	6118		76.774	4.8967	1	1602600			36574	6147	25040	25093	42245	42245					0.09618930965643813
KVTQLKQLS	9	Unmodified	_KVTQLKQLS_					0	0	0		ENST00000445984.5_1_20:57094606-57098803:+|nuORF	ENST00000445984.5_1_20:57094606-57098803:+|nuORF	ENST00000445984.5_1_20:57094606-57098803:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7647705078125	2	522.824224	1043.63389	-0.66615	-0.00034828	-0.2124	-0.00011105	-0.87855	-0.00045933	522.823822838962	30.51	0.66416	30.518	30.289	30.953	0.0086708					37	15	4	0	0	0	0.024397	1	1917	1917		31.53	4.8369	1	1041000			36575	14446	25041	25094	42246	42246					0.1138229140274234
KVTRIKAR	8	Unmodified	_KVTRIKAR_					0	0	0			REV__ENSG00000166148|ENST00000299178|AVPR1A;REV__ENSG00000198049|ENST00000367126|AVPR1B	REV__ENSG00000166148|ENST00000299178|AVPR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.30535888671875	2	486.327268	970.639983	0.29008	0.00014107	2.5136	0.0012224	2.8037	0.0013635	486.3284047116497	73.064	0.65412	72.782	72.465	73.119	-0.28124					24	15	2	0	0	0	0.027866	1	8897	8897		6.7355	0	1	236360	+		36576	25979;28378	25042	25095	42247	42247					0.15348854424939873
KVTRRAQI	8	Unmodified	_KVTRRAQI_					0	0	0			REV__ENSG00000023697|ENST00000428559|DERA	REV__ENSG00000023697|ENST00000428559|DERA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3104553222656	2	486.309075	970.603597	0.077887	3.7877E-05	2.5513	0.0012407	2.6291	0.0012786	486.3102975117041	74.843	0.86904	74.843	74.509	75.378	0					75	21	5	0	0	0	0.50239	1	9200	9200		85.359	0.44396	1	9204100	+		36577	20013	25043	25096	42248	42248					0.11711977528227635
KVTVFVQG	8	Unmodified	_KVTVFVQG_					0	0	0			REV__nc|ENSG00000134324|Q14693|LPIN1	REV__nc|ENSG00000134324|Q14693|LPIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.2351379394531	2	439.260728	876.506903	0.031351	1.3771E-05	3.8537	0.0016928	3.885	0.0017065	439.26227261807867	25.599	0.58921	25.428	25.2	25.79	-0.17151					25	13	3	0	0	0	0.027866	1	1188	1188		40.778	7.9657	1	270670	+		36578	23439	25044	25097	42249	42249					0.06370990248433372
KVTVHVSQS	9	Unmodified	_KVTVHVSQS_					0	0	0			REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7720031738281	2	492.777274	983.539994	0.34198	0.00016852	-1.1437	-0.00056359	-0.80171	-0.00039506	492.7766153517441	33.287	0.93809	33.344	33.033	33.971	0.056572					35	24	2	0	0	0	0.024447	1	2291	2291		32.812	0	1	911860	+		36579	19710	25045	25098	42250	42250					0.04756572300482276
KVTVLVLVV	9	Unmodified	_KVTVLVLVV_					0	0	0		ENSG00000125522|ENST00000684052|NPBWR2;NPBWR2|p.R256Q|1|0.27|ENSG00000125522|chr20:64106065-64106065|C/T|missense_variant	ENSG00000125522|ENST00000684052|NPBWR2	ENSG00000125522|ENST00000684052|NPBWR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.28887939453125	2	485.338978	968.663404	1.4354	0.00069665	2.7705	0.0013446	4.2059	0.0020413	485.3401830375532	59.065	0.39379	58.878	58.648	59.042	-0.18705					11	10	2	0	0	0	0.024405	1	6658	6658		27.882	0	1	269660			36580	4117	25046	25099	42251	42251					0.1778185541890025
KVTWRETIRRL	11	Unmodified	_KVTWRETIRRL_					0	0	0		ENST00000362026.7_1_4:103947581-103949928:-|nuORF	ENST00000362026.7_1_4:103947581-103949928:-|nuORF	ENST00000362026.7_1_4:103947581-103949928:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.6268615722656	3	486.628165	1456.86267	-0.035739	-1.7392E-05	-1.9671	-0.00095726	-2.0029	-0.00097466	486.62708413078377	105.05	0.31744	105.06	104.87	105.19	0.00096893					16	9	2	0	0	0	1.1077	1	13448	13448		9.2118	0.41249	1	234360			36581	12813	25047	25100	42252	42252					0.1525088369949117
KVTYPLEV	8	Unmodified	_KVTYPLEV_					0	0	0			REV__ENSG00000092094|ENST00000206542|OSGEP	REV__ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.77362060546875	2	474.773668	947.532783	1.1535	0.00054764	-1.3124	-0.00062307	-0.15888	-7.5433E-05	474.77297582327463	99.198	1.0987	99.198	98.647	99.746	0					64	24	3	0	0	0	0.74904	1	12669	12669		63.306	11.971	1	2194500	+		36582	20924	25048	25101	42253	42253					0.056918397000458754
KVTYPLEV	8	Unmodified	_KVTYPLEV_					0	0	0			REV__ENSG00000092094|ENST00000206542|OSGEP	REV__ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.7737731933594	2	474.773668	947.532783	0.66162	0.00031412	-0.79343	-0.0003767	-0.1318	-6.2575E-05	474.77321307172184	99.111	1.2212	99.122	98.522	99.743	0.010239					65	27	3	0	0	0	0.845	3	12628	12616;12628;12640		55.504	4.1688	1	2003000	+		36583	20924	25048	25101	42254;42255;42256	42255					0.056918397000458754
KVVAHGKW	8	Unmodified	_KVVAHGKW_					0	0	0			REV__ENST00000373644.4_1_10:70332714-70332792:+|nuORF	REV__ENST00000373644.4_1_10:70332714-70332792:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.7736511230469	2	462.774337	923.534121	0.93204	0.00043132	-3.384	-0.001566	-2.4519	-0.0011347	462.7727026039877	18.279	0.44219	18.123	17.904	18.346	-0.15637					19	8	4	0	0	0	0.96719	1	287	287		42.474	6.8562	1	351600	+		36584	31265	25049	25102	42257	42257					0.06929518579465821
KVVALVHAV	9	Unmodified	_KVVALVHAV_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.30517578125	2	468.30547	934.596387	0.39283	0.00018397	-0.11051	-5.1752E-05	0.28232	0.00013221	468.3052811489178	39.701	0.78703	39.701	39.425	40.212	0					47	21	3	0	0	0	0.075871	1	3437	3437		119.22	66.922	1	2180500			36585	849	25050	25103	42258	42258					0.12647244927791235
KVVALVHAV	9	Unmodified	_KVVALVHAV_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.30547	934.596387	-0.77294	-0.00036197	1.0283	0.00048154	0.25532	0.00011957	468.30578441779414	39.807	0.69721	39.695	39.398	40.095	-0.11222	-0.0079465	0.00061728	NaN	119.22	57	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2156800			36586	849	25050	25103							0.12647244927791235
KVVALVHAV	9	Unmodified	_KVVALVHAV_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	468.30547	934.596387	-0.13924	-6.5207E-05	0.42055	0.00019695	0.28131	0.00013174	468.3054630220793	39.979	0.85667	40.002	39.705	40.562	0.023003	0.29971	4.8087E-05	NaN	119.22	56	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2055700			36587	849	25050	25103							0.12647244927791235
KVVALVHAV	9	Unmodified	_KVVALVHAV_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.30547	934.596387	-0.079498	-3.7229E-05	-0.75273	-0.00035251	-0.83223	-0.00038974	468.3047359886124	39.675	0.38889	39.522	39.354	39.743	-0.15251	-0.1803	-0.0010508	NaN	119.22	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416690			36588	849	25050	25103							0.12647244927791235
KVVALVHAV	9	Unmodified	_KVVALVHAV_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.30547	934.596387	-0.17169	-8.0403E-05	-0.36937	-0.00017298	-0.54106	-0.00025338	468.3050509870812	39.889	0.47104	39.664	39.42	39.891	-0.225	-0.038482	-0.00069176	NaN	119.22	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332500			36589	849	25050	25103							0.12647244927791235
KVVALVHAV	9	Unmodified	_KVVALVHAV_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.30547	934.596387	-0.44036	-0.00020622	0.34633	0.00016219	-0.094027	-4.4034E-05	468.3052549046593	39.861	0.5001	39.631	39.391	39.891	-0.2302	-0.071553	-2.1424E-05	NaN	119.22	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353550			36590	849	25050	25103							0.12647244927791235
KVVEEGDVIK	10	Unmodified	_KVVEEGDVIK_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2900390625	2	558.318971	1114.62339	-0.53276	-0.00029745	0.63074	0.00035215	0.097983	5.4706E-05	558.3190938374871	57.821	0.46848	57.643	57.358	57.826	-0.17775					19	11	3	0	0	0	0.03519	1	6338	6338		64.207	7.4862	1	674270	+		36591	23460	25051	25104	42259	42259					0.0706626395767671
KVVELENLL	9	Unmodified	_KVVELENLL_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1;REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.322509765625	2	528.818607	1055.62266	-0.31737	-0.00016783	1.6737	0.00088511	1.3564	0.00071727	528.8191090467154	69.98	1.3609	69.98	69.383	70.744	0					94	36	4	0	0	0	0.72494	1	8482	8482		44.377	1.9027	1	15950000	+		36592	22402;36602	25052	25105	42260	42260					0.09707469308614236
KVVEPRRTV	9	Unmodified	_KVVEPRRTV_					0	0	0		ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7598266601562	2	542.33529	1082.65603	-0.5431	-0.00029454	0.18364	9.9593E-05	-0.35947	-0.00019495	542.3352465019356	41.533	0.54264	41.305	41.044	41.587	-0.2278					31	13	3	0	0	0	0.024427	1	3648	3648		19.997	8.4858	1	816620			36593	13813	25053	25106	42261	42261					0.11800515871163952
KVVEPRRTV	9	Unmodified	_KVVEPRRTV_					0	0	0		ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.33529	1082.65603	-0.37745	-0.0002047	-0.54762	-0.00029699	-0.92507	-0.0005017	542.3353362498847	41.195	0.45164	41.195	40.944	41.396	0	-0.08731	-0.00093995	NaN	18.262	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242610			36594	13813	25053	25106							0.11800515871163952
KVVEPRRTV	9	Unmodified	_KVVEPRRTV_					0	0	0		ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.33529	1082.65603	-0.48603	-0.00026359	0.38778	0.00021031	-0.098251	-5.3285E-05	542.3354303034828	41.366	0.41317	41.243	41.051	41.464	-0.12317	-0.03993	7.4655E-05	NaN	18.262	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301560			36595	13813	25053	25106							0.11800515871163952
KVVEPRRTV	9	Unmodified	_KVVEPRRTV_					0	0	0		ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	ENST00000412087.2_1_X:100143133-100143544:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.33529	1082.65603	-0.67181	-0.00036435	0.25203	0.00013668	-0.41978	-0.00022766	542.3354377878192	41.423	0.45011	41.446	41.182	41.633	0.023006	0.16364	-7.2591E-05	NaN	18.262	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320990			36596	13813	25053	25106							0.11800515871163952
KVVERELI	8	Unmodified	_KVVERELI_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.3162841796875	2	493.305667	984.596781	0.40821	0.00020137	0.10419	5.1397E-05	0.5124	0.00025277	493.30540769362096	18.478	0.69198	18.321	18.05	18.742	-0.15637					26	13	4	0	0	0	0.77775	1	312	312		60.972	0.67798	1	241300			36597	1039	25054	25107	42262	42262					0.10386619857001733
KVVERELI	8	Unmodified	_KVVERELI_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.305667	984.596781	3.2578	0.0016071	-3.5585	-0.0017554	-0.30068	-0.00014833	493.30373455138533	18.115	0.39271	18.115	17.94	18.333	0	-0.11826	-0.0024733	NaN	60.972	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48068			36598	1039	25054	25107							0.10386619857001733
KVVERELI	8	Unmodified	_KVVERELI_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;CUL3|p.L436Ffs*9|1|0.53|ENSG00000036257|chr2:224503721-224503722|-/A|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.305667	984.596781	0.24184	0.0001193	-0.63844	-0.00031494	-0.3966	-0.00019564	493.3051750372017	18.306	0.3947	18.175	18.006	18.401	-0.13148	-0.058409	0.00040767	NaN	60.972	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47534			36599	1039	25054	25107							0.10386619857001733
KVVETRYVL	9	Unmodified	_KVVETRYVL_					0	0	0			REV__nc|ENSG00000178773|Q9UBL6|CPNE7	REV__nc|ENSG00000178773|Q9UBL6|CPNE7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8297729492188	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	0.80003	1	10563	10563		39.253	2.0937	1	1623500	+		36600	27206	25055	25108	42263	42263					0.10094577919812764
KVVFAVPK	8	Unmodified	_KVVFAVPK_					0	0	0		nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7-4|MAGI1	nc|ENSG00000151276|Q96QZ7-4|MAGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2919616699219	2	444.289288	886.564024	0.10813	4.8041E-05	-3.5487	-0.0015767	-3.4406	-0.0015286	444.2876595562798	37.201	0.30055	37.233	37.149	37.45	0.032269					11	7	2	0	0	0	0.027866	1	2951	2951		3.9852	0	1	89568			36601	6191	25056	25109	42264	42264					0.11620457524793437
KVVFQLCLER	10	Carbamidomethyl (C)	_KVVFQLC(Carbamidomethyl (C))LER_	KVVFQLC(1)LER		KVVFQLC(41)LER		0	1	0			REV__nc|ENSG00000222009|C9JJ37-2|BTBD19	REV__nc|ENSG00000222009|C9JJ37-2|BTBD19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	646.3657836914062	2	646.36319	1290.71183	0.10778	6.9666E-05	3.6764	0.0023763	3.7842	0.0024459	646.3656023172358	46.555	0.70706	46.294	45.93	46.637	-0.26118					53	18	4	0	0	0	1.0344	1	4458	4458		41.427	8.6761	1	8429100	+		36602	28845	25057	25110	42265	42265	376				0.0780998099644421
KVVGGDEEST	10	Unmodified	_KVVGGDEEST_					0	0	0			REV__nc|ENSG00000102984|O75541-2|ZNF821	REV__nc|ENSG00000102984|O75541-2|ZNF821	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7645263671875	2	510.745836	1019.47712	-0.90975	-0.00046465	-4.174	-0.0021319	-5.0838	-0.0025965	510.7441589716815	25.757	0.41965	25.757	25.403	25.823	0					13	9	2	0	0	0	0.03519	1	1247	1247		54.776	14.204	1	55040	+		36603	36528	25058	25111	42266	42266					-0.03184038278220669
KVVGGGLII	9	Unmodified	_KVVGGGLII_					0	0	0			REV__ENST00000595844.5_1_19:12787852-12790977:-|nuORF	REV__ENST00000595844.5_1_19:12787852-12790977:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2621765136719	2	428.286746	854.558939	0.1166	4.9939E-05	3.0206	0.0012937	3.1372	0.0013436	428.28777141788294	90.137	0.47974	90.12	89.837	90.317	-0.016716					25	11	3	0	0	0	0.024506	1	11331	11331		23.042	4.7181	1	368870	+		36604	20956	25059	25112	42267	42267					0.12584153662180597
KVVHYNNW	8	Unmodified	_KVVHYNNW_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2343139648438	2	530.272158	1058.52976	-0.50657	-0.00026862	3.5173	0.0018651	3.0107	0.0015965	530.7746926969969	67.67	0.21043	67.436	67.261	67.471	-0.23376					5	4	2	0	0	0	0.027866	1	7777	7777		38.806	9.6361	1	82412	+		36605	24719	25060	25113	42268	42268					0.002840093658733167
KVVIKEEDI	9	Unmodified	_KVVIKEEDI_					0	0	0			REV__ENST00000445636.1_1_13:50935548-50935701:-|nuORF	REV__ENST00000445636.1_1_13:50935548-50935701:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3428344726562	2	536.816064	1071.61758	-0.87851	-0.0004716	-1.3321	-0.00071511	-2.2106	-0.0011867	536.8152367299501	27.47	0.3308	27.457	27.241	27.572	-0.012983					10	7	2	0	0	0	0.024506	1	1467	1467		30.504	0	1	64774	+		36606	32617	25061	25114	42269	42269					0.08463165446005405
KVVIKLIT	8	Unmodified	_KVVIKLIT_					0	0	0			REV__ENST00000249442.10_1_2:177202345-177202405:+|nuORF	REV__ENST00000249442.10_1_2:177202345-177202405:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2891845703125	2	457.325871	912.637189	0.01379	6.3064E-06	1.062	0.00048568	1.0758	0.00049198	457.3265151967464	93.777	0.25889	93.63	93.523	93.782	-0.14771					7	5	2	0	0	0	0.027866	1	11538	11538		13.775	0	1	32000	+		36607	29490	25062	25115	42270	42270					0.17737586247415038
KVVIRGAGNQ	10	Unmodified	_KVVIRGAGNQ_					0	0	0		nc|ENSG00000016864|Q68CQ7-2|GLT8D1;ENST00000484163.5_1_3:52729811-52734476:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.747314453125	2	521.311815	1040.60908	-0.81032	-0.00042243	2.0438	0.0010655	1.2335	0.00064305	521.3121949801049	35.731	0.22946	35.526	35.387	35.616	-0.20518					6	5	2	0	0	0	0.03519	1	2722	2722		20.947	0	1	61882			36608	15296	25063	25116	42271	42271					0.09039656320032918
KVVKGTSFQL	10	Unmodified	_KVVKGTSFQL_					0	0	0		ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENST00000475908.5_1_5:56205193-56212726:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	1.0122	1	10624	10624		44.377	0.26039	1	1748900			36609	15074	25064	25117	42272	42272					0.10094577919812764
KVVKLIGVN	9	Unmodified	_KVVKLIGVN_					0	0	0			REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31292724609375	2	485.326402	968.638252	0.086673	4.2065E-05	-0.68852	-0.00033416	-0.60185	-0.00029209	485.32603282951567	40.078	0.22155	40.078	39.915	40.137	0					11	5	3	0	0	0	0.024412	1	3477	3477		31.955	1.4512	1	156370	+		36610	19712	25065	25118	42273	42273					0.1526780061633417
KVVKNGLFN	9	Unmodified	_KVVKNGLFN_					0	0	0		ENST00000524019.5_1_14:102717905-102771389:-|nuORF	ENST00000524019.5_1_14:102717905-102771389:-|nuORF	ENST00000524019.5_1_14:102717905-102771389:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8031921386719	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	0.94809	1	10561	10561		29.15	1.2673	1	2572600			36611	16053	25066	25119	42274	42274					0.08902039576844345
KVVKQKNL	8	Unmodified	_KVVKQKNL_					0	0	0			REV__ENSG00000165059|ENST00000377276|PRKACG	REV__ENSG00000165059|ENST00000377276|PRKACG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.8160705566406	2	478.816202	955.617851	0.97449	0.0004666	-1.5682	-0.00075086	-0.59366	-0.00028425	478.8153771282043	49.232	0.90802	49.232	48.934	49.842	0					60	24	4	0	0	0	0.52467	1	5080	5080		83.287	0	1	4253500	+		36612	25833	25067	25120	42275	42275					0.13826629956508896
KVVKQKNL	8	Unmodified	_KVVKQKNL_					0	0	0			REV__ENSG00000165059|ENST00000377276|PRKACG	REV__ENSG00000165059|ENST00000377276|PRKACG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.8155212402344	2	478.816202	955.617851	0.12974	6.2124E-05	-0.73142	-0.00035021	-0.60167	-0.00028809	478.8157709165366	49.45	0.73783	49.298	49.007	49.744	-0.15169					55	19	4	0	0	0	0.52467	1	5085	5085		83.287	11.909	1	3779100	+		36613	25833	25067	25120	42276	42276					0.13826629956508896
KVVKSLLQG	9	Unmodified	_KVVKSLLQG_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2032165527344	2	486.316035	970.617516	0.21993	0.00010695	-0.36831	-0.00017911	-0.14838	-7.2159E-05	486.3157649553642	39.485	0.489	39.26	39.022	39.511	-0.2257					18	12	2	0	0	0	0.024447	1	3366	3366		25.574	8.2091	1	197070			36614	11022	25068	25121	42277	42277					0.13103210236670293
KVVKSLLQG	9	Unmodified	_KVVKSLLQG_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.316035	970.617516	-0.59099	-0.00028741	0.25581	0.0001244	-0.33518	-0.000163	486.31600624294555	39.374	0.3358	39.209	39.044	39.379	-0.16458	-0.13164	-0.00037117	NaN	25.574	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230960			36615	11022	25068	25121							0.13103210236670293
KVVKSLLQG	9	Unmodified	_KVVKSLLQG_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.316035	970.617516	-0.4455	-0.00021665	0.22518	0.00010951	-0.22032	-0.00010715	486.3161070166089	39.496	0.38953	39.273	39.073	39.462	-0.22311	-0.067861	-0.00040095	NaN	25.574	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148780			36616	11022	25068	25121							0.13103210236670293
KVVLASSSPVF	11	Unmodified	_KVVLASSSPVF_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.E126*|1|0.19|ENSG00000079999|chr19:10499658-10499659|-/A|frameshift_variant;KEAP1-RAD23A|1|fusion	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3300170898438	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0292	1	11151	11151		30.318	1.1477	1	19210000			36617	1680	25069	25122	42278	42278					0.0881915819995811
KVVLHRLI	8	Unmodified	_KVVLHRLI_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.K1417Ffs*20|1|0.14|ENSG00000128833|chr15:52211777-52211778|-/TCTCTTTCTCAACAATGTTTGCTAAATAACTGAA|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7842102050781	2	489.334562	976.65457	0.00020712	1.0135E-07	-1.2299	-0.00060183	-1.2297	-0.00060173	489.3340218696049	56.015	0.49096	56.015	55.75	56.241	0					18	13	2	0	0	0	0.027866	1	6245	6245		26.796	7.4361	1	87393			36618	4315	25070	25123	42279	42279					0.16530926573091165
KVVLHRLI	8	Unmodified	_KVVLHRLI_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.K1417Ffs*20|1|0.14|ENSG00000128833|chr15:52211777-52211778|-/TCTCTTTCTCAACAATGTTTGCTAAATAACTGAA|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.7842102050781	2	489.334562	976.65457	-0.33143	-0.00016218	0.034772	1.7015E-05	-0.29666	-0.00014517	489.3345785090214	56.096	0.46905	55.94	55.778	56.247	-0.15601					18	12	2	0	0	0	0.027866	1	6220	6220		26.796	13.021	1	78215			36619	4315	25070	25123	42280	42280					0.16530926573091165
KVVLHRLI	8	Unmodified	_KVVLHRLI_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.K1417Ffs*20|1|0.14|ENSG00000128833|chr15:52211777-52211778|-/TCTCTTTCTCAACAATGTTTGCTAAATAACTGAA|frameshift_variant;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.334562	976.65457	-1.0884	-0.0005326	6.589	0.0032242	5.5005	0.0026916	489.33767434611536	55.94	0.21497	55.725	55.565	55.78	-0.21551	-0.16863	0.0063588	NaN	33.516	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94188			36620	4315	25070	25123							0.16530926573091165
KVVLILGTSI	10	Unmodified	_KVVLILGTSI_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.812744140625	2	521.847167	1041.67978	-0.17119	-8.9335E-05	-3.9702	-0.0020718	-4.1414	-0.0021612	521.8448583419681	41.425	0.23951	41.302	41.224	41.464	-0.12317					9	6	2	0	0	0	0.03519	1	3727	3727		21.96	9.753	1	56420			36621	9213	25071	25124	42281	42281					0.16060936584995034
KVVLINKTI	9	Unmodified	_KVVLINKTI_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2947387695312	2	514.347335	1026.68012	0.030145	1.5505E-05	-0.39528	-0.00020331	-0.36514	-0.00018781	514.3466897733352	86.614	0.89645	86.568	86.119	87.016	-0.045105					26	20	2	0	0	0	0.024405	1	10819	10819		44.117	0	1	42699	+		36622	22248	25072	25125	42282	42282					0.16784356304833636
KVVLVPESPNL	11	Unmodified	_KVVLVPESPNL_					0	0	0		ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	ENST00000381475.3_1:147851207-147931919:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8554077148438	2	597.858264	1193.70197	-1.0361	-0.00061944	-2.4468	-0.0014628	-3.4829	-0.0020823	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.013	1	11655	11655		33.922	2.3918	1	4942300			36623	13341	25073	25126	42283	42283					0.11287116262769814
KVVLVPLAKI	10	Unmodified	_KVVLVPLAKI_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.28955078125	2	540.381177	1078.7478	-1.1189	-0.00060466	3.5907	0.0019403	2.4717	0.0013357	540.3829131411625	53.158	0.21175	53.254	53.195	53.407	0.095669					9	5	3	0	0	0	0.03519	1	5686	5686		10.866	9.7701	1	97054	+		36624	21364	25074	25127	42284	42284					0.21157806235646603
KVVNIVPVI	9	Unmodified	_KVVNIVPVI_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.291259765625	2	490.828778	979.643003	-0.48882	-0.00023993	1.4526	0.00071298	0.96378	0.00047305	490.82929918316074	66.446	0.63781	66.476	66.267	66.905	0.030106					31	18	2	0	0	0	0.024325	1	7835	7835		50.025	4.0726	1	1773900			36625	9359	25075	25128	42285	42285					0.15236684759088348
KVVNKFKGQ	9	Unmodified	_KVVNKFKGQ_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.266845703125	2	524.319109	1046.62366	1.0793	0.00056592	2.5467	0.0013353	3.626	0.0019012	524.3205033235294	51.364	0.61769	51.183	50.797	51.415	-0.18071					22	15	2	0	0	0	0.024495	1	5232	5232		19.997	5.1319	1	133420			36626	1596	25076	25129	42286	42286					0.10221728468172842
KVVNKFKGQ	9	Unmodified	_KVVNKFKGQ_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.319109	1046.62366	-0.57345	-0.00030067	3.4851	0.0018273	2.9117	0.0015267	524.3209926688534	51.534	0.50154	51.258	50.929	51.431	-0.27643	0.037159	0.00053847	NaN	25.574	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159220			36627	1596	25076	25129							0.10221728468172842
KVVNLKQAI	9	Unmodified	_KVVNLKQAI_					0	0	0		ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24;ENST00000581054.1_1_17:38192365-38210656:-|nuORF	ENSG00000008838|ENST00000394128|MED24	ENSG00000008838|ENST00000394128|MED24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3159484863281	2	506.829309	1011.64407	-0.37843	-0.0001918	-0.042302	-2.144E-05	-0.42073	-0.00021324	506.82911899506934	69.221	0.76367	69.221	68.825	69.588	0					43	19	3	0	0	0	0.024506	1	8303	8303		23.042	0	1	947980			36628	852	25077	25130	42287	42287					0.1387089912798274
KVVNNMPI	8	Unmodified	_KVVNNMPI_					0	0	0		ENST00000396128.8_1_14:45397628-45397811:-|nuORF	ENST00000396128.8_1_14:45397628-45397811:-|nuORF	ENST00000396128.8_1_14:45397628-45397811:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.2891845703125	2	457.760038	913.505523	0.17276	7.9083E-05	-0.16785	-7.6836E-05	0.0049088	2.247E-06	457.7605198132873	93.726	0.21468	93.603	93.453	93.668	-0.12215					5	4	2	0	0	0	0.027866	1	11541	11541		37.028	10.232	1	18781			36629	13544	25078	25131	42288	42288					0.04531032888007758
KVVPRFER	8	Unmodified	_KVVPRFER_					0	0	0		ENSG00000141068|ENST00000644974|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1	ENSG00000141068|ENST00000644974|KSR1	ENSG00000141068|ENST00000644974|KSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2952880859375	2	515.811451	1029.60835	0.75543	0.00038966	-2.3042	-0.0011885	-1.5488	-0.00079887	515.8102569712772	36.979	0.59217	36.77	36.445	37.037	-0.2092					24	14	2	0	0	0	0.027866	1	2941	2941		42.396	3.59	1	321550			36630	5468	25079	25132	42289	42289					0.09472861670974453
KVVQEMKI	8	Unmodified	_KVVQEMKI_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.79083251953125	2	487.788795	973.563038	0.37956	0.00018514	3.3532	0.0016356	3.7327	0.0018208	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.043	1	9967	9967		30.504	0	1	2659000			36631	10102	25080	25133	42290	42290					0.0751987509358969
KVVQIEQVRPN	11	Unmodified	_KVVQIEQVRPN_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2571105957031	3	437.257738	1308.75138	0.65097	0.00028464	-1.4641	-0.00064018	-0.81311	-0.00035554	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	1.0408	1	12479	12479		27.644	1.5805	1	1147200	+		36632	22197	25081	25134	42291	42291					0.10935824271541605
KVVQIEQVRPN	11	Unmodified	_KVVQIEQVRPN_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.257080078125	3	437.257738	1308.75138	0.83222	0.00036389	-1.4122	-0.00061748	-0.57995	-0.00025359	437.2571932125785	95.656	2.2091	95.658	94.321	96.53	0.0020676					119	51	3	0	0	0	1.0215	1	12104	12104		32.034	6.9081	1	434810	+		36633	22197	25081	25134	42292	42292					0.10935824271541605
KVVQIEQVRPN	11	Unmodified	_KVVQIEQVRPN_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.25732421875	3	437.257738	1308.75138	1.1887	0.00051975	-1.9793	-0.00086548	-0.79069	-0.00034573	437.2568354988285	97.354	2.8643	97.354	96.484	99.348	-3.8147E-05					200	65	5	0	0	0	0.95911	6	12358	12326;12336;12348;12358;12382;12451		45.908	17.331	1	1114100	+		36634	22197	25081	25134	42293;42294;42295;42296;42297;42298	42296					0.10935824271541605
KVVQIEQVRPN	11	Unmodified	_KVVQIEQVRPN_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2573547363281	3	437.257738	1308.75138	0.70758	0.0003094	-1.6013	-0.00070019	-0.89375	-0.0003908	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	0.95911	3	12116	12008;12116;12170		45.908	18.264	1	1350500	+		36635	22197	25081	25134	42299;42300;42301	42300					0.10935824271541605
KVVQIEQVRPN	11	Unmodified	_KVVQIEQVRPN_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2567443847656	3	437.257738	1308.75138	1.0571	0.00046224	-1.8864	-0.00082483	-0.82923	-0.00036259	437.25688759784646	97.353	2.9903	97.23	96.187	99.177	-0.12368					226	70	5	0	0	0	1.017	1	12163	12163		33.039	8.8076	1	1091400	+		36636	22197	25081	25134	42302	42302					0.10935824271541605
KVVQIEQVRPN	11	Unmodified	_KVVQIEQVRPN_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2561340332031	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	1.0123	3	12116	12003;12013;12116		34.087	11.259	1	1104700	+		36637	22197	25081	25134	42303;42304;42305	42305					0.10935824271541605
KVVQRAIQV	9	Unmodified	_KVVQRAIQV_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2451782226562	2	520.832383	1039.65021	-0.99975	-0.0005207	-3.8527	-0.0020066	-4.8524	-0.0025273	520.8307961686901	50.372	0.39932	50.372	50.178	50.577	0					21	11	2	0	0	0	0.024323	1	5301	5301		35.618	0	1	222620	+		36638	21403	25082	25135	42306	42306					0.13197417359492647
KVVRDGPKR	9	Unmodified	_KVVRDGPKR_					0	0	0			REV__nc|ENSG00000135318|P21589-2|NT5E	REV__nc|ENSG00000135318|P21589-2|NT5E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7637329101562	2	527.827632	1053.64071	-0.33614	-0.00017743	2.5674	0.0013552	2.2313	0.0011777	527.8287771766198	92.607	0.83306	92.485	92.182	93.015	-0.12242					29	19	2	0	0	0	0.024495	1	11423	11423		19.997	4.355	1	389290	+		36639	23529	25083	25136	42307	42307					0.11603649073981614
KVVRLAEAH	9	Unmodified	_KVVRLAEAH_					0	0	0			REV__ENST00000441115.5_1_3:50012785-50103056:+|nuORF	REV__ENST00000441115.5_1_3:50012785-50103056:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7742309570312	2	511.808908	1021.60326	-0.22938	-0.0001174	-1.2134	-0.00062101	-1.4427	-0.00073841	511.808245526092	45.556	0.2028	45.456	45.323	45.526	-0.099449					7	4	2	0	0	0	0.024405	1	4334	4334		44.117	5.3107	1	138490	+		36640	19780	25084	25137	42308	42308					0.09332557808363617
KVVRRRLAEK	10	Unmodified	_KVVRRRLAEK_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	418.9009094238281	3	418.942084	1253.80442	0.43255	0.00018121	-0.86234	-0.00036127	-0.42979	-0.00018006	418.94188600265664	18.819	0.5434	18.616	18.411	18.954	-0.20371					13	10	2	0	0	0	0.03519	1	349	349		16.007	0	1	35274			36641	3239	25085	25138	42309	42309					0.18767246844868168
KVVSGYRVRN	10	Unmodified	_KVVSGYRVRN_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3434448242188	2	589.343646	1176.67274	-0.70201	-0.00041373	0.016702	9.8433E-06	-0.68531	-0.00040388	589.3434995059089	95.339	0.8998	95.342	95.045	95.944	0.0033722					53	20	4	0	0	0	1.0992	1	12121	12121		32.812	2.4947	1	728860			36642	5832	25086	25139	42310	42310					0.09147016757151505
KVVSHNPL	8	Unmodified	_KVVSHNPL_					0	0	0			REV__ENSG00000248487|ENST00000273596|ABHD14A	REV__ENSG00000248487|ENST00000273596|ABHD14A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.2400207519531	2	447.263802	892.513051	0.78953	0.00035313	2.4615	0.001101	3.2511	0.0014541	447.26509228448225	54.505	0.41521	54.299	54.122	54.538	-0.20613					13	10	2	0	0	0	0.027866	1	5759	5759		51.335	0	1	278630	+		36643	29011	25087	25140	42311	42311					0.06249508479936594
KVVSPALRA	9	Unmodified	_KVVSPALRA_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7641296386719	2	470.800552	939.58655	0.18574	8.7448E-05	-0.045976	-2.1645E-05	0.13977	6.5803E-05	470.8004341698001	31.603	0.60566	31.672	31.445	32.051	0.068962					31	14	3	0	0	0	0.024447	1	2065	2065		32.812	1.2826	1	564730			36644	3340	25088	25141	42312	42312					0.11434056922405489
KVVSPALRA	9	Unmodified	_KVVSPALRA_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	470.800552	939.58655	0.18319	8.6247E-05	-0.18534	-8.7258E-05	-0.0021481	-1.0113E-06	470.80030805572045	31.824	0.53708	31.588	31.373	31.91	-0.23667	-0.11318	-0.00025178	NaN	32.812	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718120			36645	3340	25088	25141							0.11434056922405489
KVVSPALRA	9	Unmodified	_KVVSPALRA_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.800552	939.58655	0.13756	6.4765E-05	-0.11991	-5.6452E-05	0.017656	8.3124E-06	470.8003302999975	31.765	0.75952	31.58	31.321	32.081	-0.18503	-0.12116	-0.00019017	NaN	32.812	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668840			36646	3340	25088	25141							0.11434056922405489
KVVSPALRA	9	Unmodified	_KVVSPALRA_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.800552	939.58655	-0.68777	-0.0003238	0.52753	0.00024836	-0.16024	-7.5442E-05	470.80071700696385	31.873	0.66687	31.716	31.412	32.079	-0.15772	0.0147	0.00041946	NaN	32.812	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739940			36647	3340	25088	25141							0.11434056922405489
KVVSTSFITPV	11	Unmodified	_KVVSTSFITPV_					0	0	0		ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B;nc|ENSG00000168658|Q502W6-4|VWA3B;ENST00000490947.2_1_2:98862011-98928799:+|nuORF;nc|ENSG00000168658|Q502W6-3|VWA3B;nc|ENSG00000168658|Q502W6-7|VWA3B;nc|ENSG00000168658|Q502W6-5|VWA3B;ENST00000495571.5_1_2:98833411-98928809:+|nuORF	ENSG00000168658|ENST00000477737|VWA3B	ENSG00000168658|ENST00000477737|VWA3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3434448242188	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0292	1	11607	11607		30.318	4.7437	1	15816000			36648	7850	25089	25142	42313	42313					0.09415427371413898
KVVTCPFVLFL	11	Unmodified	_KVVTCPFVLFL_					0	0	0			REV__ENST00000255304.8_1_13:31233032-31233128:+|nuORF	REV__ENST00000255304.8_1_13:31233032-31233128:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3694458007812	2	633.369952	1264.72535	1.1238	0.00071176	-2.3848	-0.0015104	-1.261	-0.00079869	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0075	1	12298	12298		35.152	2.3396	1	8250400	+		36649	29541	25090	25143	42314	42314					0.1035783877571248
KVVTCPFVLFL	11	Unmodified	_KVVTCPFVLFL_					0	0	0			REV__ENST00000255304.8_1_13:31233032-31233128:+|nuORF	REV__ENST00000255304.8_1_13:31233032-31233128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3673706054688	2	633.369952	1264.72535	-0.5109	-0.00032359	-0.79477	-0.00050339	-1.3057	-0.00082697	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.9728	1	11734	11734		42.864	2.0861	1	9245900	+		36650	29541	25090	25143	42315	42315					0.1035783877571248
KVVVHGQPRN	10	Unmodified	_KVVVHGQPRN_					0	0	0			REV__ENST00000476764.2_1_3:197281466-197282409:-|nuORF	REV__ENST00000476764.2_1_3:197281466-197282409:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3298950195312	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.1265	1	11463	11463		24.519	2.5593	1	13648000	+		36651	33314	25091	25144	42316	42316					0.0855074758567298
KVVVHGQPRN	10	Unmodified	_KVVVHGQPRN_					0	0	0			REV__ENST00000476764.2_1_3:197281466-197282409:-|nuORF	REV__ENST00000476764.2_1_3:197281466-197282409:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.1286	1	11065	11065		25.574	0	1	18337000	+		36652	33314	25091	25144	42317	42317					0.0855074758567298
KVVVKTKTEY	10	Unmodified	_KVVVKTKTEY_					0	0	0		ENSG00000168824|ENST00000621129|NSG1	ENSG00000168824|ENST00000621129|NSG1	ENSG00000168824|ENST00000621129|NSG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8556518554688	2	597.858264	1193.70197	-1.8915	-0.0011309	-1.6048	-0.00095944	-3.4963	-0.0020903	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.1307	1	11320	11320		26.693	0	1	5655800			36653	7870	25092	25145	42318	42318					0.11287116262769814
KVVVKTKTEY	10	Unmodified	_KVVVKTKTEY_					0	0	0		ENSG00000168824|ENST00000621129|NSG1	ENSG00000168824|ENST00000621129|NSG1	ENSG00000168824|ENST00000621129|NSG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	597.858264	1193.70197	-1.1131	-0.00066547	-1.508	-0.0009016	-2.6211	-0.0015671	598.3593015087366	90.895	2.4279	90.77	89.373	91.801	-0.12512					145	57	3	0	0	0	1.0447	1	11202	11202		40.058	11.977	1	2839900			36654	7870	25092	25145	42319	42319					0.11287116262769814
KVVVLPTN	8	Unmodified	_KVVVLPTN_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.2523498535156	2	435.276378	868.538203	0.9597	0.00041773	-0.99963	-0.00043511	-0.039927	-1.7379E-05	435.27586967862777	78.346	0.6997	78.154	77.849	78.549	-0.1921					29	16	3	0	0	0	0.027866	1	9655	9655		49.442	7.0454	1	352350			36655	1547	25093	25146	42320	42320					0.09867563282512037
KVVVQGIPE	9	Unmodified	_KVVVQGIPE_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.27197265625	2	484.792392	967.570232	0.96285	0.00046678	-0.69981	-0.00033926	0.26305	0.00012752	484.7919900116878	64.003	0.50578	64.048	63.867	64.372	0.045502					27	13	3	0	0	0	0.024436	1	7425	7425		23.042	11.531	1	310500			36656	6043	25094	25147	42321	42321					0.08514930965657186
KVVVRENN	8	Unmodified	_KVVVRENN_					0	0	0			REV__ENSG00000070770|ENST00000262506|CSNK2A2	REV__ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2773742675781	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.96769	1	10118	10118		42.396	3.59	1	7774800	+		36657	20436	25095	25148	42322	42322					0.06031992020314192
KVVYKLHY	8	Unmodified	_KVVYKLHY_					0	0	0		nc|ENSG00000162746|Q6BAA4-3|FCRLB;nc|ENSG00000162746|Q6BAA4-2|FCRLB;nc|ENSG00000162746|Q6BAA4-5|FCRLB;nc|ENSG00000162746|Q6BAA4-4|FCRLB;ENSG00000162746|ENST00000367948|FCRLB	nc|ENSG00000162746|Q6BAA4-3|FCRLB	nc|ENSG00000162746|Q6BAA4-3|FCRLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.287353515625	2	525.310752	1048.60695	-0.1937	-0.00010175	2.9946	0.0015731	2.8009	0.0014713	525.3121166291871	82.166	0.80207	82.192	81.899	82.701	0.025719					37	18	3	0	0	0	0.027866	1	10193	10193		31.955	7.7521	1	229680			36658	6986	25096	25149	42323	42323					0.08459227582238782
KVVYKLHY	8	Unmodified	_KVVYKLHY_					0	0	0		nc|ENSG00000162746|Q6BAA4-3|FCRLB;nc|ENSG00000162746|Q6BAA4-2|FCRLB;nc|ENSG00000162746|Q6BAA4-5|FCRLB;nc|ENSG00000162746|Q6BAA4-4|FCRLB;ENSG00000162746|ENST00000367948|FCRLB	nc|ENSG00000162746|Q6BAA4-3|FCRLB	nc|ENSG00000162746|Q6BAA4-3|FCRLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2874145507812	2	525.310752	1048.60695	0.091503	4.8068E-05	2.3433	0.0012309	2.4348	0.001279	525.311794181477	82.173	0.4296	81.992	81.814	82.244	-0.18079					16	9	2	0	0	0	0.027866	1	9918	9918		40.573	27.613	1	145970			36659	6986	25096	25149	42324	42324					0.08459227582238782
KVVYRKMNL	9	Unmodified	_KVVYRKMNL_					0	0	0		ENST00000494664.5_1_3:119242472-119242556:+|nuORF	ENST00000494664.5_1_3:119242472-119242556:+|nuORF	ENST00000494664.5_1_3:119242472-119242556:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8433227539062	2	575.841894	1149.66923	-0.082096	-4.7274E-05	1.9831	0.001142	1.901	0.0010947	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	0.83071	1	11084	11084		37.159	0.71236	1	1475600			36660	15535	25097	25150	42325	42325					0.10038630658937109
KVWAGIIL	8	Unmodified	_KVWAGIIL_					0	0	0			REV__ENST00000285518.10_1_8:6616554-6616653:+|nuORF	REV__ENST00000285518.10_1_8:6616554-6616653:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2745056152344	2	450.289288	898.564024	-0.16599	-7.4741E-05	2.4162	0.001088	2.2503	0.0010133	450.2900141338987	92.324	0.5666	92.201	91.979	92.545	-0.12242					32	13	3	0	0	0	0.027866	1	11379	11379		28.254	0	1	367940	+		36661	29916	25098	25151	42326	42326					0.11068457524800124
KVWEVSFV	8	Unmodified	_KVWEVSFV_					0	0	0		ENST00000336278.8_1_16:69337423-69337513:+|nuORF	ENST00000336278.8_1_16:69337423-69337513:+|nuORF	ENST00000336278.8_1_16:69337423-69337513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2965393066406	2	497.273835	992.533118	0.068717	3.4171E-05	-4.0023	-0.0019902	-3.9336	-0.0019561	497.2716802049902	69.007	0.48349	69.007	68.789	69.273	0					19	12	2	0	0	0	0.027866	1	8318	8318		53.351	12.779	1	206790			36662	12407	25099	25152	42327	42327					0.036552594199065425
KVWGNVVTV	9	Unmodified	_KVWGNVVTV_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2922668457031	2	501.292559	1000.57057	0.35337	0.00017714	-1.0573	-0.00053	-0.7039	-0.00035286	501.2920118443011	55.836	1.1779	55.836	55.5	56.678	0					97	32	4	0	0	0	0.14024	2	6211	6199;6211		101.6	23.941	1	12066000			36663	4164	25100	25153	42328;42329	42329					0.07030350685533904
KVWGNVVTV	9	Unmodified	_KVWGNVVTV_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2918395996094	2	501.292559	1000.57057	-0.21162	-0.00010608	-0.43858	-0.00021986	-0.6502	-0.00032594	501.29231867896516	55.945	1.242	55.789	55.442	56.684	-0.15601					95	33	4	0	0	0	0.091713	2	6188	6176;6188		113.41	39.437	1	10552000			36664	4164	25100	25153	42330;42331	42331					0.07030350685533904
KVWGNVVTV	9	Unmodified	_KVWGNVVTV_					0	0	0		nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2919006347656	2	501.292559	1000.57057	-0.79918	-0.00040062	0.20935	0.00010495	-0.58983	-0.00029568	501.2926226076571	55.589	1.2526	55.687	55.257	56.51	0.098015					101	33	4	0	0	0	0.14024	2	6082	6060;6082		101.6	5.4103	1	9234300			36665	4164	25100	25153	42332;42333	42333					0.07030350685533904
KVWKIALN	8	Unmodified	_KVWKIALN_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000484231.1_1_3:99998514-100002656:+|nuORF;ENST00000475134.1_1_3:99998514-100014027:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29229736328125	2	486.30547	970.596387	-0.82912	-0.0004032	1.0759	0.00052323	0.2468	0.00012002	486.3059717927748	81.892	0.49422	81.918	81.779	82.273	0.025711					20	11	3	0	0	0	0.027866	1	10168	10168		65.803	25.231	1	452610			36666	1038	25101	25154	42334	42334					0.10991244927788557
KVWKLAEV	8	Unmodified	_KVWKLAEV_					0	0	0		nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4;ENST00000554063.1_1_14:23416808-23417238:-|nuORF;ENST00000556421.5_1_14:23416818-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-3|HAUS4;ENST00000556421.5_1_14:23416818-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-3|HAUS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7768859863281	2	486.797478	971.580402	-0.39201	-0.00019083	0.25088	0.00012213	-0.14113	-6.8703E-05	486.7974394567321	41.367	0.63509	41.39	41.182	41.818	0.023003					34	17	3	0	0	0	0.027866	1	3713	3713		90.777	0	1	381150			36667	1974;16709	25102	25155	42335	42335					0.09347538690894908
KVWKQRIS	8	Unmodified	_KVWKQRIS_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2958984375	2	522.819276	1043.624	0.041337	2.1612E-05	2.9513	0.001543	2.9926	0.0015646	522.8202391563153	103.5	1.0961	103.37	102.98	104.08	-0.12724					28	26	2	0	0	0	0.027866	1	12893	12893		12.207	0	1	70889			36668	5942	25103	25156	42336	42336					0.10393148188040868
KVWNINPK	8	Unmodified	_KVWNINPK_					0	0	0			REV__ENST00000433152.8_2_10:67345559-67440743:+|nuORF	REV__ENST00000433152.8_2_10:67345559-67440743:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2715148925781	2	499.792727	997.5709	-0.29735	-0.00014861	-3.7667	-0.0018826	-4.064	-0.0020312	499.79071576107845	22.163	0.51728	22.163	21.868	22.385	0					18	10	2	0	0	0	0.027866	1	741	741		33.516	3.0119	1	164660	+		36669	32396	25104	25157	42337	42337					0.07201770405367824
KVWRELQV	8	Unmodified	_KVWRELQV_					0	0	0		ENST00000366600.7_1_1:235622034-235634192:-|nuORF	ENST00000366600.7_1_1:235622034-235634192:-|nuORF	ENST00000366600.7_1_1:235622034-235634192:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3181762695312	2	529.311284	1056.60801	-0.95488	-0.00050543	-3.4941	-0.0018495	-4.449	-0.0023549	529.3093283933582	39.078	0.49742	38.979	38.737	39.234	-0.098755					31	13	3	0	0	0	0.027866	1	3346	3346		19.36	0	1	1114400			36670	12818	25105	25158	42338	42338					0.081974419511198
KVYDRHIW	8	Unmodified	_KVYDRHIW_					0	0	0			REV__ENST00000478440.1_1_2:182339705-182343590:+|nuORF	REV__ENST00000478440.1_1_2:182339705-182343590:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.5919799804688	2	558.801083	1115.58761	-0.18049	-0.00010086	-3.7938	-0.00212	-3.9743	-0.0022208	558.7989105172875	42.064	0.81403	41.941	41.603	42.417	-0.12299					62	21	4	0	0	0	0.027866	1	3791	3791		33.516	18.851	1	1868500	+		36671	33368	25106	25159	42339	42339					0.03444271291300538
KVYEKWQQWWQ	11	Unmodified	_KVYEKWQQWWQ_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.305419921875	3	536.936776	1607.7885	-1.1333	-0.00060849	-4.2081	-0.0022595	-5.3414	-0.002868	537.2681817876284	48.111	0.23294	47.958	47.858	48.091	-0.15301					10	6	2	0	0	0	0.024896	1	4861	4861		3.4087	0	1	732380	+		36672	26511	25107	25160	42340	42340					0.008914958173136256
KVYINMLSI	9	Unmodified	_KVYINMLSI_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|44|1|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|44|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8097534179688	2	540.809728	1079.6049	0.50413	0.00027264	-3.6809	-0.0019906	-3.1767	-0.001718	540.8076334980944	63.625	0.82862	63.625	63.126	63.954	0					67	22	4	0	0	0	0.11092	1	7484	7484		108.09	4.0307	1	9951900	+		36673	36277	25108	25161	42341	42341					0.06828430782115902
KVYIPPII	8	Unmodified	_KVYIPPII_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3006286621094	2	471.804771	941.59499	-0.22871	-0.00010791	-1.963	-0.00092617	-2.1917	-0.0010341	471.80249235975464	38.002	0.57348	37.823	37.63	38.203	-0.17929					27	16	4	0	0	0	0.027866	1	3110	3110		37.028	1.8278	1	683360			36674	5635	25109	25162	42342	42342					0.12185610839048877
KVYLQRRD	8	Unmodified	_KVYLQRRD_					0	0	0		ENST00000444039.1_1_22:21311393-21318804:+|nuORF	ENST00000444039.1_1_22:21311393-21318804:+|nuORF	ENST00000444039.1_1_22:21311393-21318804:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7985229492188	2	539.311815	1076.60908	0.21842	0.0001178	1.112	0.00059972	1.3304	0.00071752	539.3118922943505	97.46	0.66792	97.459	97.058	97.726	-3.0518E-05					34	14	3	0	0	0	0.027866	1	12318	12318		29.15	0	1	57374			36675	14412	25110	25163	42343	42343					0.07383656320052978
KVYQNFLNL	9	Unmodified	_KVYQNFLNL_					0	0	0		ENST00000368452.2_6:122931626-122996266:+|nuORF	ENST00000368452.2_6:122931626-122996266:+|nuORF	ENST00000368452.2_6:122931626-122996266:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.29345703125	2	569.816399	1137.61824	-0.11409	-6.5011E-05	-1.6891	-0.00096246	-1.8032	-0.0010275	569.8152849761447	45.254	0.5878	45.001	44.67	45.258	-0.25252					27	15	3	0	0	0	0.024381	1	4265	4265		29.15	0	1	354000			36676	12893	25111	25164	42344	42344					0.054940048857361035
KVYRQTNL	8	Unmodified	_KVYRQTNL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant;PLEC|p.G497Wfs*30|1|0.35|ENSG00000178209|chr8:143934410-143934411|-/G|frameshift_variant	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7859191894531	2	511.293091	1020.57163	0.082139	4.1997E-05	1.9626	0.0010034	2.0447	0.0010454	511.29397062336716	86.886	0.29249	86.907	86.844	87.137	0.021263					8	6	2	0	0	0	0.027866	1	10867	10867		20.947	0	1	75564			36677	18548	25112	25165	42345	42345					0.06216565054421608
KVYRRGPQ	8	Unmodified	_KVYRRGPQ_					0	0	0			REV__L1MB3_dup16437|chr20:32177634-32177851:-|1.964596084596821|0.0982233447456923|4.32|501.0|5|2|sense	REV__L1MB3_dup16437|chr20:32177634-32177851:-|1.964596084596821|0.0982233447456923|4.32|501.0|5|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2538757324219	2	502.293425	1002.5723	-1.1111	-0.00055809	-1.4849	-0.00074585	-2.596	-0.0013039	502.29248372600125	44.76	0.55494	44.611	44.455	45.009	-0.1488					37	15	3	0	0	0	0.027866	1	4281	4281		17.365	0	1	2717400	+		36678	36201	25113	25166	42346	42346					0.07111404494139606
KVYVSKGTGT	10	Unmodified	_KVYVSKGTGT_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2415161132812	2	520.292756	1038.57096	0.05968	3.1051E-05	3.5679	0.0018564	3.6276	0.0018874	520.2945448832454	76.396	0.5527	76.227	75.972	76.525	-0.16854					21	12	2	0	0	0	0.03519	1	9028	9028		35.152	13.192	1	189850	+		36679	26900	25114	25167	42347	42347					0.05321725614726347
KVYVSKGTGT	10	Unmodified	_KVYVSKGTGT_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.292756	1038.57096	-0.14883	-7.7436E-05	3.923	0.0020411	3.7742	0.0019637	520.2948310581825	76.65	0.63576	76.382	76.129	76.765	-0.26806	0.051154	0.00028426	NaN	28.081	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201970	+		36680	26900	25114	25167							0.05321725614726347
KVYVSKGTGT	10	Unmodified	_KVYVSKGTGT_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.292756	1038.57096	0.4158	0.00021634	3.0578	0.001591	3.4736	0.0018073	520.2944781964054	76.635	0.55351	76.383	76.103	76.657	-0.25162	0.052349	-0.00061606	NaN	28.081	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175790	+		36681	26900	25114	25167							0.05321725614726347
KWAKGLMKSL	10	Oxidation (M)	_KWAKGLM(Oxidation (M))KSL_		KWAKGLM(1)KSL		KWAKGLM(41)KSL	0	0	1			REV__ENSG00000203883|ENST00000340356|SOX18	REV__ENSG00000203883|ENST00000340356|SOX18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3436279296875	2	589.341726	1176.6689	-0.57069	-0.00033633	2.3802	0.0014028	1.8095	0.0010664	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0393	1	11677	11677		40.778	11.629	1	17343000	+		36682	28553	25115	25168	42348	42348		848			0.08763210939059718
KWEKRRLRSSL	11	Unmodified	_KWEKRRLRSSL_					0	0	0			REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.216552734375	3	486.959915	1457.85791	0.067897	3.3063E-05	-3.5612	-0.0017342	-3.4933	-0.0017011	486.95855954479055	99.005	0.48588	99.001	98.68	99.166	-0.0038834					19	10	2	0	0	0	0.024873	1	12582	12582		6.001	0.30226	1	55702	+		36683	29915	25116	25169	42349	42349					0.14729999556743678
KWEKRRLRSSL	11	Unmodified	_KWEKRRLRSSL_					0	0	0			REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	486.959915	1457.85791	0.56647	0.00027585	-4.7112	-0.0022942	-4.1447	-0.0020183	486.95848500659304	99.167	0.87695	99.031	98.547	99.424	-0.13526	0.099752	-0.0021646	NaN	6.001	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59651	+		36684	29915	25116	25169							0.14729999556743678
KWEKRRLRSSL	11	Unmodified	_KWEKRRLRSSL_					0	0	0			REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	486.959915	1457.85791	1.0599	0.00051611	-1.6666	-0.00081159	-0.60679	-0.00029548	486.9581131567683	98.889	0.56807	98.764	98.635	99.203	-0.12458	-0.16741	0.0022831	NaN	6.001	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56448	+		36685	29915	25116	25169							0.14729999556743678
KWEKRRLRSSL	11	Unmodified	_KWEKRRLRSSL_					0	0	0			REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	REV__ENST00000285407.10_1_8:103664606-103667894:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	486.959915	1457.85791	0.20979	0.00010216	-3.953	-0.001925	-3.7432	-0.0018228	486.95854197449904	99.098	0.60986	98.93	98.671	99.281	-0.16862	-0.0018538	-0.001057	NaN	6.001	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60310	+		36686	29915	25116	25169							0.14729999556743678
KWGEPATRF	9	Unmodified	_KWGEPATRF_					0	0	0			REV__ENSG00000176302|ENST00000317011|FOXR1	REV__ENSG00000176302|ENST00000317011|FOXR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3117065429688	2	546.285266	1090.55598	-1.0174	-0.00055579	-0.8058	-0.0004402	-1.8232	-0.00099598	546.2846342996811	22.097	0.89188	22.097	21.819	22.711	0					32	18	2	0	0	0	0.024457	1	771	771		21.96	6.3181	1	93031	+		36687	27013	25117	25170	42350	42350					0.0143227853739063
KWGEPATRF	9	Unmodified	_KWGEPATRF_					0	0	0			REV__ENSG00000176302|ENST00000317011|FOXR1	REV__ENSG00000176302|ENST00000317011|FOXR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.285266	1090.55598	-0.74582	-0.00040743	1.0788	0.00058934	0.333	0.00018192	546.2850428037065	22.382	0.23402	22.197	22.047	22.281	-0.18539	0.10793	0.0007512	NaN	21.96	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18192	+		36688	27013	25117	25170							0.0143227853739063
KWIGTLVALHQ	11	Unmodified	_KWIGTLVALHQ_					0	0	0			REV__ENST00000467077.1_1_3:142074240-142074312:-|nuORF	REV__ENST00000467077.1_1_3:142074240-142074312:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.58197021484375	3	422.583674	1264.72919	-0.39406	-0.00016652	-3.6523	-0.0015434	-4.0463	-0.0017099	422.5820497034196	95.914	2.933	95.914	95.007	97.94	0					172	67	3	0	0	0	1.0557	1	12197	12197		15.921	0	1	719610	+		36689	33062	25118	25171	42351	42351					0.10741644593804267
KWIHLTGP	8	Unmodified	_KWIHLTGP_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2264709472656	2	476.27417	950.533787	-0.20453	-9.7412E-05	-3.4537	-0.0016449	-3.6582	-0.0017423	476.2725722888834	34.887	0.3922	34.865	34.513	34.905	-0.021763					15	9	2	0	0	0	0.027866	1	2609	2609		57.811	28.662	1	173980	+		36690	28464	25119	25172	42352	42352					0.056540988596111674
KWKGAASPI	9	Unmodified	_KWKGAASPI_					0	0	0			REV__ENSG00000136939|ENST00000259466|OR1L4	REV__ENSG00000136939|ENST00000259466|OR1L4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27752685546875	2	479.279452	956.544351	0.51465	0.00024666	-4.4703	-0.0021425	-3.9557	-0.0018959	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.83071	1	10305	10305		37.159	4.3467	1	4752300	+		36691	23712	25120	25173	42353	42353					0.0643408151404401
KWKSSNVPEG	10	Unmodified	_KWKSSNVPEG_					0	0	0			REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.2936401367188	2	566.293288	1130.57202	0.45818	0.00025946	-1.8223	-0.001032	-1.3641	-0.0007725	566.2922246825858	54.397	0.91967	54.191	53.947	54.866	-0.20613					45	24	3	0	0	0	0.83673	1	5773	5773		58.23	3.5076	1	2903900	+		36692	21476	25121	25174	42354	42354					0.011959399836086959
KWKTTMKS	8	Unmodified	_KWKTTMKS_					0	0	0		ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7140197753906	2	505.278595	1008.54264	0.10033	5.0695E-05	2.0808	0.0010514	2.1811	0.0011021	505.28117480919445	32.076	0.3427	31.839	31.611	31.954	-0.23666					9	7	2	0	0	0	0.027866	1	2174	2174		21.96	2.5999	1	54285			36693	8447	25122	25175	42355	42355					0.038707044337797925
KWKTTMKS	8	Unmodified	_KWKTTMKS_					0	0	0		ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.278595	1008.54264	0.050884	2.5711E-05	9.4934	0.0047968	9.5443	0.0048225	505.28194167057626	32.027	0.34365	31.834	31.685	32.029	-0.19261	-0.0023714	0.0035056	NaN	15.642	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75612			36694	8447	25122	25175							0.038707044337797925
KWKVLVPE	8	Unmodified	_KWKVLVPE_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.78741455078125	2	499.805303	997.596052	-0.12237	-6.1162E-05	1.0539	0.00052676	0.93156	0.0004656	500.30740525562567	72.754	0.60266	72.477	72.154	72.756	-0.2769					27	13	3	0	0	0	0.027866	1	8508	8508		21.96	2.5999	1	125450			36695	1786	25123	25176	42356	42356					0.09715825207945272
KWKVLVPE	8	Unmodified	_KWKVLVPE_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.805303	997.596052	-0.026285	-1.3138E-05	1.1422	0.00057089	1.1159	0.00055775	500.3076180396042	72.75	0.55454	72.485	72.213	72.767	-0.26479	0.0038008	4.2645E-05	NaN	20.947	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152480			36696	1786	25123	25176							0.09715825207945272
KWLFRVLS	8	Unmodified	_KWLFRVLS_					0	0	0		ENST00000323224.7_1_18:672908-673115:+|nuORF	ENST00000323224.7_1_18:672908-673115:+|nuORF	ENST00000323224.7_1_18:672908-673115:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2537841796875	2	524.818744	1047.62294	-0.17845	-9.3652E-05	-3.287	-0.0017251	-3.4654	-0.0018187	524.8166541027767	45.292	0.96855	45.04	44.67	45.638	-0.25252					53	26	3	0	0	0	0.027866	1	4272	4272		37.159	11.709	1	1392400			36697	12236	25124	25177	42357	42357					0.101029338191438
KWLLLGLLY	9	Unmodified	_KWLLLGLLY_					0	0	0			REV__ENST00000464256.1_1_21:34131875-34131941:-|nuORF	REV__ENST00000464256.1_1_21:34131875-34131941:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.8157958984375	2	559.852253	1117.68995	0.042426	2.3752E-05	1.2628	0.00070696	1.3052	0.00073071	560.3540974493621	80.949	0.28083	80.711	80.608	80.889	-0.23784					8	6	2	0	0	0	0.024535	1	9733	9733		25.45	12.491	1	61054	+		36698	32967	25125	25178	42358	42358					0.135815443102274
KWMLQRAL	8	Unmodified	_KWMLQRAL_					0	0	0			REV__ENSG00000102055|ENST00000378131|PPP1R2C	REV__ENSG00000102055|ENST00000378131|PPP1R2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3035278320312	2	523.302404	1044.59026	0.12304	6.4388E-05	1.9867	0.0010396	2.1097	0.001104	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	1.0572	1	10317	10317		28.254	1.4582	1	3963900	+		36699	21283	25126	25179	42359	42359					0.06974403424624143
KWNREMNRYWN	11	Unmodified	_KWNREMNRYWN_					0	0	0			REV__nc|ENSG00000120915|P34913-3|EPHX2	REV__nc|ENSG00000120915|P34913-3|EPHX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2550659179688	3	532.921131	1595.74156	-0.64184	-0.00034205	0.0787	4.1941E-05	-0.56314	-0.00030011	533.2556331285214	40.618	2.4318	40.468	39.394	41.826	-0.1497					80	64	2	0	0	0	1.0621	1	3559	3559		21.78	7.6944	1	3462700	+		36700	22570	25127	25180	42360	42360					-0.03247687005455191
KWNVFPDLP	9	Unmodified	_KWNVFPDLP_					0	0	0			REV__ENSG00000173890|ENST00000355897|GPR160	REV__ENSG00000173890|ENST00000355897|GPR160	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2705078125	2	558.297842	1114.58113	-0.087263	-4.8719E-05	-0.87713	-0.0004897	-0.9644	-0.00053842	558.2970542302116	63.239	1.6239	63.239	62.651	64.275	0					70	43	3	0	0	0	0.024209	1	7309	7309		56.721	10.749	1	1316300	+		36701	26817	25128	25181	42361	42361					0.028423333399359763
KWNVFPDLP	9	Unmodified	_KWNVFPDLP_					0	0	0			REV__ENSG00000173890|ENST00000355897|GPR160	REV__ENSG00000173890|ENST00000355897|GPR160	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.297842	1114.58113	1.4051	0.00078446	-2.5715	-0.0014357	-1.1664	-0.00065119	558.2962034759729	63.239	1.1232	63.293	62.931	64.054	0.054104	0.027047	-0.00073634	NaN	56.721	52	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735380	+		36702	26817	25128	25181							0.028423333399359763
KWPKRGRA	8	Unmodified	_KWPKRGRA_					0	0	0			REV__nc|ENSG00000055732|Q8TDD5-2|MCOLN3	REV__nc|ENSG00000055732|Q8TDD5-2|MCOLN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.77685546875	2	499.80396	997.593367	-0.89751	-0.00044858	-1.0921	-0.00054583	-1.9896	-0.00099441	499.80373209560037	61.338	0.41667	61.162	60.997	61.413	-0.1761					15	9	2	0	0	0	0.027866	1	6844	6844		33.516	17.042	1	86434	+		36703	20206	25129	25182	42362	42362					0.09447414593648773
KWPKRGRA	8	Unmodified	_KWPKRGRA_					0	0	0			REV__nc|ENSG00000055732|Q8TDD5-2|MCOLN3	REV__nc|ENSG00000055732|Q8TDD5-2|MCOLN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.80396	997.593367	-0.073104	-3.6538E-05	-7.4168	-0.0037069	-7.4899	-0.0037435	500.2993273076432	61.506	0.29168	61.292	61.042	61.334	-0.21375	0.065415	-0.0012631	NaN	25.45	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99354	+		36704	20206	25129	25182							0.09447414593648773
KWQWVAQGQ	9	Unmodified	_KWQWVAQGQ_					0	0	0			REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.831298828125	2	565.790715	1129.56688	-0.42577	-0.0002409	-3.0208	-0.0017091	-3.4465	-0.00195	565.7901744893271	53.777	0.18675	53.58	53.523	53.709	-0.19739					6	5	2	0	0	0	0.024381	1	5663	5663		55.504	11.387	1	123530	+		36705	27161	25130	25183	42363	42363					0.007276809116547156
KWRCQGADW	9	Unmodified	_KWRCQGADW_					0	0	0		ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.2672729492188	2	575.26655	1148.51855	0.37252	0.0002143	1.6112	0.00092688	1.9837	0.0011412	575.267424595764	22.407	0.59885	22.218	22.007	22.606	-0.18894					36	12	4	0	0	0	0.27161	1	803	803		79.451	4.4077	1	726950			36706	10331	25131	25184	42364	42364					-0.0497713599988856
KWRCQGADW	9	Unmodified	_KWRCQGADW_					0	0	0		ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	ENSG00000204345|ENST00000375352|CD300LD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.267822265625	2	575.26655	1148.51855	-0.79299	-0.00045618	2.7078	0.0015577	1.9148	0.0011015	575.2680674486354	22.624	0.82702	22.438	22.142	22.969	-0.18539					37	17	4	0	0	0	0.31247	1	817	817		73.975	3.1585	1	510630			36707	10331	25131	25184	42365	42365					-0.0497713599988856
KWRPQLLVAP	10	Unmodified	_KWRPQLLVAP_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3659057617188	2	604.369133	1206.72371	-1.0438	-0.00063086	-2.7772	-0.0016785	-3.8211	-0.0023093	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.1166	1	13222	13222		30.504	18.993	1	4517100	+		36708	26683	25132	25185	42366	42366					0.12861965801971564
KWRSLNYG	8	Unmodified	_KWRSLNYG_					0	0	0			REV__ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant	REV__ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.27001953125	2	512.272158	1022.52976	0.51992	0.00026634	-2.7406	-0.0014039	-2.2207	-0.0011376	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	1.0338	1	13699	13699		31.955	2.8053	1	6752000	+		36709	19184	25133	25186	42367	42367					0.01940009365887363
KWSKGLMKSL	10	Unmodified	_KWSKGLMKSL_					0	0	0			REV__ENSG00000171056|ENST00000304501|SOX7	REV__ENSG00000171056|ENST00000304501|SOX7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3433227539062	2	589.341726	1176.6689	-0.57069	-0.00033633	2.3802	0.0014028	1.8095	0.0010664	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0616	1	11698	11698		37.812	3.8899	1	17343000	+		36710	26538	25134	25187	42368	42368					0.08763210939082455
KWTHELKKIFR	11	Unmodified	_KWTHELKKIFR_					0	0	0			REV__nc|ENSG00000186111|O60331-2|PIP5K1C	REV__nc|ENSG00000186111|O60331-2|PIP5K1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.95794677734375	3	495.961144	1484.8616	0.11558	5.7323E-05	-4.1704	-0.0020684	-4.0548	-0.002011	495.9586955030579	102.22	1.4592	102.1	101.41	102.87	-0.12666					105	35	4	0	0	0	1.0978	1	12776	12776		11.932	3.2387	1	705850	+		36711	37025	25135	25188	42369	42369					0.13856669330562
KWTHELKKIFR	11	Unmodified	_KWTHELKKIFR_					0	0	0			REV__nc|ENSG00000186111|O60331-2|PIP5K1C	REV__nc|ENSG00000186111|O60331-2|PIP5K1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.958740234375	3	495.961144	1484.8616	0.11895	5.8993E-05	-3.996	-0.0019818	-3.877	-0.0019229	495.9586334061718	102.37	1.6075	102.2	101.47	103.08	-0.17178					122	38	5	0	0	0	1.1092	1	12714	12714		8.7993	0.39205	1	585730	+		36712	37025	25135	25188	42370	42370					0.13856669330562
KWTSSLPFI	9	Unmodified	_KWTSSLPFI_					0	0	0			REV__ENST00000532163.5_1_11:111945098-111945239:+|nuORF	REV__ENST00000532163.5_1_11:111945098-111945239:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7973022460938	2	539.800217	1077.58588	-0.36904	-0.00019921	0.53251	0.00028745	0.16347	8.8243E-05	539.8000815017555	98.888	0.53191	98.898	98.736	99.268	0.010239					19	11	2	0	0	0	0.42604	1	12613	12613		64.207	0	1	40261	+		36713	34577	25136	25189	42371	42371					0.05019217482708882
KWWRWLRRRRR	11	Unmodified	_KWWRWLRRRRR_					0	0	0			REV__chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7457580566406	4	439.515826	1754.0342	-0.12871	-5.6572E-05	1.1334	0.00049813	1.0046	0.00044156	439.5161217212258	34.53	0.12026	34.354	34.293	34.413	-0.17557					4	2	2	0	0	0	0.024902	1	2539	2539		0.31226	0.31226	1	36186	+		36714	19362	25137	25190	42372	42372					0.18734098301138147
KWWRWLRRRRR	11	Unmodified	_KWWRWLRRRRR_					0	0	0			REV__chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		4	439.515826	1754.0342	-0.33552	-0.00014747	-1.6506	-0.00072546	-1.9861	-0.00087293	439.7657763418534	34.567	0.16233	34.36	34.284	34.446	-0.20696	0.0028059	-0.0024436	NaN	0.31226	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29120	+		36715	19362	25137	25190							0.18734098301138147
KWWRWSWWWL	10	Unmodified	_KWWRWSWWWL_					0	0	0			REV__chr12:54282611-54283827|522|61.21|0.0|22.55|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54282611-54283827|522|61.21|0.0|22.55|+|1|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8319091796875	3	540.606813	1618.79861	-1.6411	-0.00088719	-4.4462	-0.0024036	-6.0873	-0.0032908	540.9393061329353	75.24	0.22285	75.24	75.155	75.378	0					6	5	2	0	0	0	0.03519	1	9220	9220		22.58	15.561	1	187290	+		36716	19359	25138	25191	42373	42373					0.013961483331968338
KWYAPMVPM	9	Unmodified	_KWYAPMVPM_					0	0	0			REV__ENST00000498576.1_1_1:11137245-11137690:-|nuORF	REV__ENST00000498576.1_1_1:11137245-11137690:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.733642578125	2	561.777373	1121.54019	0.23224	0.00013047	4.1702	0.0023427	4.4024	0.0024732	561.779522604639	79.083	0.54645	78.852	78.476	79.023	-0.23141					20	12	2	0	0	0	0.024487	1	9408	9408		24.203	5.0992	1	122530	+		36717	33885	25139	25192	42374	42374					-0.015714672955482456
KWYSATFPFYW	11	Unmodified	_KWYSATFPFYW_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7845153808594	3	499.239684	1494.69722	-0.28638	-0.00014297	0.66909	0.00033403	0.3827	0.00019106	499.2400852122112	46.886	0.48477	46.945	46.729	47.214	0.059097					30	12	3	0	0	0	0.024834	1	4650	4650		23.378	13.732	1	373220	+		36718	27297	25140	25193	42375	42375					-0.03033767880015148
KYDASLFSH	9	Unmodified	_KYDASLFSH_					0	0	0			REV__ENSG00000239388|ENST00000487349|ASB14	REV__ENSG00000239388|ENST00000487349|ASB14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2608032226562	2	534.261456	1066.50836	2.9865	0.0015956	-3.5889	-0.0019174	-0.60242	-0.00032185	534.2593903273729	17.572	0.44509	17.572	17.399	17.844	0					21	8	4	0	0	0	0.50848	1	180	180		58.782	5.4305	1	379370	+		36719	28949	25141	25194	42376	42376					-0.022234204534925084
KYDASLFSH	9	Unmodified	_KYDASLFSH_					0	0	0			REV__ENSG00000239388|ENST00000487349|ASB14	REV__ENSG00000239388|ENST00000487349|ASB14	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	534.261456	1066.50836	2.9865	0.0015956	-3.5889	-0.0019174	-0.60242	-0.00032185	534.2593903273729	17.572	0.44509	17.572	17.399	17.844	0	-0.031814	-0.001651	NaN	58.782	21	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379370	+		36720	28949	25141	25194							-0.022234204534925084
KYDASLFSH	9	Unmodified	_KYDASLFSH_					0	0	0			REV__ENSG00000239388|ENST00000487349|ASB14	REV__ENSG00000239388|ENST00000487349|ASB14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.261456	1066.50836	-0.56059	-0.0002995	1.0818	0.00057796	0.52119	0.00027845	534.261800139382	17.856	0.29905	17.649	17.514	17.813	-0.20669	0.045016	0.0033398	NaN	58.782	13	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33012	+		36721	28949	25141	25194							-0.022234204534925084
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	647.2750854492188	2	647.274761	1292.53497	0.88869	0.00057523	-1.146	-0.00074177	-0.25729	-0.00016654	647.2739630209154	45.87	1.5629	45.87	45.548	47.111	0					132	43	5	0	0	0	0.014454	5	4486	4473;4486;4499;4511;4523		215.39	87.929	1	15582000			36722	4002	25142	25195	42377;42378;42379;42380;42381	42378					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	431.8526306152344	3	431.852266	1292.53497	0.0025167	1.0868E-06	-0.17456	-7.5385E-05	-0.17205	-7.4299E-05	431.85218644991056	45.865	1.8135	45.865	45.548	47.361	0					153	50	6	0	0	0	0.39228	2	4498	4485;4498		82.75	44.939	1	20249000			36723	4002	25142	25195	42382;42383	42383					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	431.8520202636719	3	431.852266	1292.53497	-0.7648	-0.00033028	0.52006	0.00022459	-0.24474	-0.00010569	431.85247151761774	45.974	1.8951	45.823	45.512	47.407	-0.15157					170	52	5	0	0	0	0.6504	1	4472	4472		56.434	16.376	1	17548000			36724	4002	25142	25195	42384	42384					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	647.2744140625	2	647.274761	1292.53497	0.31623	0.00020469	-0.59225	-0.00038335	-0.27602	-0.00017866	647.2743317295709	45.986	1.6526	45.835	45.544	47.197	-0.15156					151	45	5	0	0	0	0.013924	5	4473	4473;4486;4498;4510;4522		215.39	87.929	1	14292000			36725	4002	25142	25195	42385;42386;42387;42388;42389	42385					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	647.2745971679688	2	647.274761	1292.53497	0.1795	0.00011619	-0.38501	-0.00024921	-0.20551	-0.00013302	647.2744794910506	45.928	1.4811	45.98	45.655	47.136	0.051399					144	41	6	0	0	0	0.013065	5	4446	4422;4434;4446;4458;4471		200.16	75.717	1	13927000			36726	4002	25142	25195	42390;42391;42392;42393;42394	42392					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	431.8520202636719	3	431.852266	1292.53497	0.16788	7.2501E-05	-0.42874	-0.00018515	-0.26086	-0.00011265	431.8520622260543	45.928	1.9527	45.98	45.655	47.607	0.051395					172	55	6	0	0	0	0.56934	1	4445	4445		61.691	16.669	1	18969000			36727	4002	25142	25195	42395	42395					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	646.3657836914062	2	647.274761	1292.53497	0.0333	2.1554E-05	-0.17666	-0.00011435	-0.14336	-9.2792E-05	647.2745023759965	46.23	0.75763	45.968	45.666	46.423	-0.26118					50	19	4	0	0	0	0.024427	1	4458	4458		42.396	28.259	1	1219100			36728	4002	25142	25195	42396	42396					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	431.852266	1292.53497	0.34251	0.00014791	-0.55159	-0.0002382	-0.20908	-9.029E-05	431.85193356730133	45.876	0.6941	45.779	45.529	46.223	-0.096649	-0.092997	-0.00073529	NaN	82.75	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1854100			36729	4002	25142	25195							-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	431.852266	1292.53497	-0.058572	-2.5295E-05	-0.10409	-4.4952E-05	-0.16266	-7.0246E-05	431.8521829386823	46.211	0.75617	45.95	45.593	46.35	-0.26118	0.077767	-0.00015554	NaN	82.75	59	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1658800			36730	4002	25142	25195							-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	647.274761	1292.53497	-1.3759	-0.00089059	1.0563	0.00068372	-0.3196	-0.00020687	647.2752624896622	46.062	0.63135	45.86	45.598	46.23	-0.20226	-0.023559	0.0014812	NaN	200.16	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368400			36731	4002	25142	25195							-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	431.852266	1292.53497	-0.39871	-0.00017218	0.08045	3.4743E-05	-0.31826	-0.00013744	431.85217055287495	46.04	0.70203	45.837	45.598	46.3	-0.20226	-0.035213	8.3548E-05	NaN	82.75	56	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2060900			36732	4002	25142	25195							-0.09959776352798144
KYFGGVLEY	9	Unmodified	_KYFGGVLEY_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	538.2747192382812	2	538.276575	1074.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.367	1	62.367	61.867	62.867	0								0	0	0	0.13392	1	7256	7256		84.916	37.258	1				36733	7252	25143	25196	42397	42397					0.004309382117071436
KYFGGVLEY	9	Unmodified	_KYFGGVLEY_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	538.276123046875	2	538.276575	1074.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.454	1	62.454	61.954	62.954	0								0	0	0	0.44038	1	7268	7268		58.782	10.866	1				36734	7252	25143	25196	42398	42398					0.004309382117071436
KYFGGVLEY	9	Unmodified	_KYFGGVLEY_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.775146484375	2	538.276575	1074.5386	-1.6993	-0.00091468	0.59336	0.00031939	-1.1059	-0.00059528	538.276787429138	62.647	1.0607	62.408	62.144	63.204	-0.23926					37	29	2	0	0	0	0.29158	1	7266	7266		76.774	21.27	1	1399600			36735	7252	25143	25196	42399	42399					0.004309382117071436
KYFGGVLEY	9	Unmodified	_KYFGGVLEY_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2730712890625	2	538.276575	1074.5386	-1.2828	-0.00069049	0.33471	0.00018017	-0.94807	-0.00051032	538.2767651734974	62.291	1.11	62.354	62.237	63.347	0.062767					35	28	2	0	0	0	0.2508	2	7162	7162;7178		82.241	29.304	1	1609800			36736	7252	25143	25196	42400;42401	42400					0.004309382117071436
KYGCKSTAR	9	Carbamidomethyl (C)	_KYGC(Carbamidomethyl (C))KSTAR_	KYGC(1)KSTAR		KYGC(74)KSTAR		0	1	0			REV__ENST00000397898.7_1_21:46225924-46225966:-|nuORF	REV__ENST00000397898.7_1_21:46225924-46225966:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7733154296875	2	535.774208	1069.53386	-0.5785	-0.00030994	-1.824	-0.00097725	-2.4025	-0.0012872	535.7732195467238	41.591	1.4273	41.614	41.324	42.751	0.023006					99	40	4	0	0	0	0.31037	1	3725	3725		74.255	12.148	1	18587000	+		36737	31787	25144	25197	42402	42402	420				0.0018773079727907316
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7926330566406	2	487.792727	973.5709	-1.035	-0.00050488	0.52861	0.00025785	-0.50642	-0.00024703	487.79294374395346	36.144	1.3933	36.144	35.687	37.081	0					111	37	4	0	0	0	0.24207	5	2825	2815;2825;2843;2856;2869		133.47	44.826	1	27900000			36738	3409	25145	25198	42403;42404;42405;42406;42407	42404					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.792236328125	2	487.792727	973.5709	-1.1627	-0.00056717	0.64723	0.00031571	-0.51551	-0.00025146	487.7929950920097	35.987	1.4777	35.944	35.447	36.925	-0.042458					121	39	5	0	0	0	0.2822	4	2822	2776;2785;2803;2822		119.56	30.914	1	25446000			36739	3409	25145	25198	42408;42409;42410;42411	42411					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7924499511719	2	487.792727	973.5709	-0.85537	-0.00041725	0.40656	0.00019832	-0.44882	-0.00021893	487.79287278807305	36.074	1.5861	36.112	35.569	37.155	0.038044					116	42	5	0	0	0	0.33369	5	2750	2750;2758;2770;2782;2795		106.42	29.569	1	23682000			36740	3409	25145	25198	42412;42413;42414;42415;42416	42412					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7926940917969	2	487.792727	973.5709	-0.76603	-0.00037366	0.98723	0.00048156	0.2212	0.0001079	487.7929929167153	36.154	1.1793	35.949	35.467	36.647	-0.20518					90	31	4	0	0	0	0.6248	2	2812	2812;2825		73.975	16.163	1	10344000			36741	3409	25145	25198	42417;42418	42417					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7926025390625	2	487.792727	973.5709	0.12168	5.9353E-05	0.076598	3.7364E-05	0.19827	9.6717E-05	487.7925527306263	36.111	1.1021	35.895	35.468	36.57	-0.21661					85	29	4	0	0	0	0.50239	2	2785	2785;2812		85.359	16.875	1	11662000			36742	3409	25145	25198	42419;42420	42419					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7924499511719	2	487.792727	973.5709	0.92552	0.00045146	-0.67429	-0.00032892	0.25123	0.00012255	487.79214277939536	36.032	1.2875	35.834	35.288	36.576	-0.19829					110	34	4	0	0	0	0.39824	4	2766	2766;2778;2790;2802		97.473	28.988	1	10240000			36743	3409	25145	25198	42421;42422;42423;42424	42421					0.08305770405377189
KYHQVVTL	8	Unmodified	_KYHQVVTL_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.2848815917969	2	494.284734	986.554916	-0.55739	-0.00027551	3.7736	0.0018652	3.2162	0.0015897	494.28645822732386	51.586	0.93964	51.438	51.193	52.132	-0.14735					86	26	4	0	0	0	0.845	1	5470	5470		55.504	4.1688	1	4971300			36744	4405	25146	25199	42425	42425					0.06110064168478857
KYHQVVTL	8	Unmodified	_KYHQVVTL_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2853698730469	2	494.284734	986.554916	-0.98477	-0.00048676	4.1961	0.0020741	3.2113	0.0015873	494.2866758435766	51.329	1.1575	51.416	51.077	52.235	0.087006					94	31	4	0	0	0	0.59392	1	5365	5365		76.847	2.5916	1	4096900			36745	4405	25146	25199	42426	42426					0.06110064168478857
KYIGPQRL	8	Unmodified	_KYIGPQRL_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.79302978515625	2	487.792727	973.5709	0.12168	5.9353E-05	0.076598	3.7364E-05	0.19827	9.6717E-05	487.7925527306263	36.111	1.1021	35.895	35.468	36.57	-0.21661					85	29	4	0	0	0	0.68535	1	2825	2825		68.485	5.1784	1	11662000	+		36746	23690	25147	25200	42427	42427					0.08305770405377189
KYILGSVMD	9	Unmodified	_KYILGSVMD_					0	0	0			REV__ENSG00000121270|ENST00000356608|ABCC11	REV__ENSG00000121270|ENST00000356608|ABCC11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.26904296875	2	513.270435	1024.52632	-0.52507	-0.00026951	-4.1146	-0.0021119	-4.6396	-0.0023814	513.2687894126938	79.477	1.6634	79.495	78.946	80.609	0.018677					91	39	4	0	0	0	0.53979	1	9835	9835		56.721	3.7844	1	7139400	+		36747	22587	25148	25201	42428	42428					0.015035784770361715
KYIMNRPSH	9	Unmodified	_KYIMNRPSH_					0	0	0		ENST00000242140.9_1_7:29955512-29955764:+|nuORF	ENST00000242140.9_1_7:29955512-29955764:+|nuORF	ENST00000242140.9_1_7:29955512-29955764:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2708740234375	2	573.29785	1144.58115	0.27464	0.00015745	2.2933	0.0013148	2.568	0.0014722	573.299175002641	20.964	0.72689	20.786	20.435	21.162	-0.17721					26	14	2	0	0	0	0.024539	1	648	648		35.618	11.416	1	37720			36748	11287	25149	25202	42429	42429					0.014640100682981938
KYIMNRPSH	9	Unmodified	_KYIMNRPSH_					0	0	0		ENST00000242140.9_1_7:29955512-29955764:+|nuORF	ENST00000242140.9_1_7:29955512-29955764:+|nuORF	ENST00000242140.9_1_7:29955512-29955764:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	573.29785	1144.58115	-1.2831	-0.00073558	4.3086	0.0024701	3.0255	0.0017345	573.3000767828295	21.173	0.78633	20.96	20.624	21.41	-0.2128	0.038291	0.0015761	NaN	35.618	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43972			36749	11287	25149	25202							0.014640100682981938
KYLHENLPIPQ	11	Unmodified	_KYLHENLPIPQ_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2681884765625	3	451.250472	1350.72959	-1.4379	-0.00064884	-0.23676	-0.00010684	-1.6746	-0.00075568	451.25067631721606	38.186	0.17295	38.213	38.057	38.23	0.027275					5	4	2	0	0	0	0.024816	1	3112	3112		21.78	0	1	52728			36750	1223	25150	25203	42430	42430					0.0682501952298935
KYLHVKLD	8	Unmodified	_KYLHVKLD_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8022155761719	2	508.300384	1014.58622	-0.034944	-1.7762E-05	3.1468	0.0015995	3.1118	0.0015818	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.74904	1	6111	6111		63.306	0	1	8817200	+		36751	20567	25151	25204	42431	42431					0.07950637202554844
KYLKKMLSKL	10	Unmodified	_KYLKKMLSKL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	626.8967895507812	2	626.396502	1250.77845	1.0697	0.00067004	-4.4121	-0.0027637	-3.3425	-0.0020937	626.8952058537793	107.67	0.19385	107.67	107.57	107.76	0					11	9	2	0	0	0	1.1265	1	13824	13824		24.519	1.9395	1	915720			36752	7475	25152	25205	42432	42432					0.16309216558374828
KYLKKMLSKL	10	Unmodified	_KYLKKMLSKL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	626.396502	1250.77845	0.54451	0.00034108	-5.1448	-0.0032227	-4.6003	-0.0028816	626.8948856181773	107.68	0.10371	107.68	107.58	107.69	-0.0056458	-0.011462	-0.0010252	NaN	24.519	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518280			36753	7475	25152	25205							0.16309216558374828
KYLKKMLSKL	10	Unmodified	_KYLKKMLSKL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	626.396502	1250.77845	-0.39838	-0.00024954	-2.2224	-0.0013921	-2.6207	-0.0016416	626.3957823636104	107.71	0.11417	107.72	107.65	107.77	0.0033951	0.027266	0.0026361	NaN	24.519	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531080			36754	7475	25152	25205							0.16309216558374828
KYLPQLGEWL	10	Unmodified	_KYLPQLGEWL_					0	0	0		ENST00000590627.5_1_19:13002616-13004571:+|nuORF;ENST00000587832.5_1_19:13002118-13004571:+|nuORF	ENST00000590627.5_1_19:13002616-13004571:+|nuORF	ENST00000590627.5_1_19:13002616-13004571:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2314758300781	3	416.23253	1245.67576	0.30325	0.00012622	-2.6374	-0.0010978	-2.3341	-0.00097154	416.23147739627103	21.058	1.9295	20.863	20.385	22.315	-0.19577					110	39	6	0	0	0	1.0074	1	651	651		45.022	3.9421	1	2798600			36755	17277	25153	25206	42433	42433					0.0627484709127657
KYLSPDLL	8	Unmodified	_KYLSPDLL_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.77374267578125	2	474.773668	947.532783	0.72497	0.0003442	-0.9589	-0.00045526	-0.23393	-0.00011106	474.77314857512465	99.207	1.1754	99.203	98.724	99.899	-0.0038757					63	26	3	0	0	0	0.99042	1	12576	12576		38.806	5.2906	1	2143100	+		36756	23867	25154	25207	42434	42434					0.056918397000458754
KYLYLAHLKV	10	Unmodified	_KYLYLAHLKV_					0	0	0			REV__ENSG00000185924|ENST00000331238|RTN4RL1	REV__ENSG00000185924|ENST00000331238|RTN4RL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	624.3758544921875	2	624.379166	1246.74378	0.20021	0.00012501	0.69582	0.00043445	0.89603	0.00055946	624.3795808461296	100.61	0.57427	100.62	100.3	100.87	0.010117					32	13	3	0	0	0	1.1197	1	12828	12828		20.947	0.95016	1	549860	+		36757	27809	25155	25208	42435	42435					0.1302771674190808
KYMNAVRKR	9	Unmodified	_KYMNAVRKR_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.3032836914062	2	583.334767	1164.65498	-1.4041	-0.00081907	1.8494	0.0010788	0.4453	0.00025976	583.3360621246146	64.84	0.27723	64.637	64.42	64.697	-0.20254					9	6	3	0	0	0	0.024523	1	7390	7390		37.159	12.64	1	177720			36758	5431	25156	25209	42436	42436					0.07923978230633111
KYNYYPAR	8	Unmodified	_KYNYYPAR_					0	0	0			REV__ENSG00000117151|ENST00000370630|CTBS	REV__ENSG00000117151|ENST00000370630|CTBS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.3043212890625	2	537.771991	1073.52943	-0.41715	-0.00022433	-0.69435	-0.0003734	-1.1115	-0.00059773	537.7714379290943	18.819	0.58893	18.688	18.45	19.039	-0.13147					14	11	2	0	0	0	0.027866	1	321	321		42.474	16.9	1	25973	+		36759	22330	25157	25210	42437	42437					-0.0043941035396528605
KYNYYPAR	8	Unmodified	_KYNYYPAR_					0	0	0			REV__ENSG00000117151|ENST00000370630|CTBS	REV__ENSG00000117151|ENST00000370630|CTBS	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.771991	1073.52943	1.7612	0.00094714	-3.0356	-0.0016324	-1.2743	-0.0006853	537.7704058293727	18.553	0.39138	18.553	18.382	18.774	0	-0.12283	0.00046427	NaN	42.474	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40694	+		36760	22330	25157	25210							-0.0043941035396528605
KYNYYPAR	8	Unmodified	_KYNYYPAR_					0	0	0			REV__ENSG00000117151|ENST00000370630|CTBS	REV__ENSG00000117151|ENST00000370630|CTBS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.771991	1073.52943	2.9208	0.0015707	-4.1243	-0.0022179	-1.2035	-0.00064719	537.7697805235842	18.723	0.49117	18.787	18.599	19.091	0.063309	0.1108	-0.00070668	NaN	42.474	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72225	+		36761	22330	25157	25210							-0.0043941035396528605
KYPRSPDL	8	Unmodified	_KYPRSPDL_					0	0	0			REV__nc|ENSG00000140836|Q15911-2|ZFHX3;REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.79302978515625	2	488.266542	974.51853	0.25952	0.00012671	3.4228	0.0016713	3.6824	0.001798	488.26804145165295	36.333	0.4552	36.116	35.913	36.368	-0.21661					20	11	2	0	0	0	0.027866	1	2825	2825		68.787	27.36	1	225480	+		36762	20914;37796;24044	25158	25211	42438	42438					0.030251872717599326
KYRFLVFYYNC	11	Unmodified	_KYRFLVFYYNC_					0	0	0		ENST00000503787.5_1_5:54460591-54460681:+|nuORF	ENST00000503787.5_1_5:54460591-54460681:+|nuORF	ENST00000503787.5_1_5:54460591-54460681:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7802429199219	3	505.919957	1514.73804	-0.32961	-0.00016675	-3.7883	-0.0019166	-4.1179	-0.0020834	506.2531404877372	38.686	0.24141	38.46	38.282	38.523	-0.2257					6	5	2	0	0	0	0.024828	1	3192	3192		24.232	9.5381	1	47938			36763	15701	25159	25212	42439	42439					0.0012625016800029698
KYRRILKN	8	Unmodified	_KYRRILKN_					0	0	0			REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.816650390625	2	545.845825	1089.6771	-0.47077	-0.00025697	2.1636	0.001181	1.6928	0.00092403	545.8468149976985	54.523	0.62399	54.621	54.426	55.05	0.098015					28	17	2	0	0	0	0.027866	1	5863	5863		17.365	6.4994	1	288540	+		36764	36485	25160	25213	42440	42440					0.13584525970691175
KYRRILKN	8	Unmodified	_KYRRILKN_					0	0	0			REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	545.845825	1089.6771	-1.0225	-0.00055814	3.0146	0.0016455	1.9921	0.0010874	545.8473180224292	54.735	0.51787	54.735	54.461	54.979	0	0.07165	0.00047383	NaN	17.365	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367070	+		36765	36485	25160	25213							0.13584525970691175
KYRRILKN	8	Unmodified	_KYRRILKN_					0	0	0			REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.845825	1089.6771	-0.75614	-0.00041273	2.0769	0.0011337	1.3207	0.00072092	545.8469290708036	54.786	0.62363	54.635	54.442	55.065	-0.15036	-0.028441	-0.00054987	NaN	17.365	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302430	+		36766	36485	25160	25213							0.13584525970691175
KYVCLAVE	8	Unmodified	_KYVCLAVE_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.76092529296875	2	462.746596	923.478639	-0.31712	-0.00014675	1.2029	0.00055664	0.88578	0.00040989	462.7477508160957	48.975	0.39443	48.822	48.54	48.935	-0.15277					21	10	3	0	0	0	0.027866	1	4983	4983		11.511	0	1	168230			36767	3534	25161	25214	42441	42441					0.013839242768199256
KYVLMLLCD	9	Unmodified	_KYVLMLLCD_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-4|DOK7	REV__nc|ENSG00000175920|Q18PE1-4|DOK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2616577148438	2	549.290314	1096.56607	-0.089176	-4.8984E-05	3.9285	0.0021579	3.8393	0.0021089	549.2948882769041	91.911	0.97578	91.92	91.528	92.504	0.0094147					67	23	5	0	0	0	0.024457	1	11519	11519		37.159	8.0096	1	889980	+		36768	26982	25162	25215	42442	42442					0.021653821560903452
KYVRKKYRFEL	11	Unmodified	_KYVRKKYRFEL_					0	0	0			REV__ENSG00000162105|ENST00000601538|SHANK2	REV__ENSG00000162105|ENST00000601538|SHANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.6346435546875	3	510.636549	1528.88782	-0.12429	-6.3468E-05	-3.2565	-0.0016629	-3.3808	-0.0017264	510.63436108979977	102.98	1.484	102.98	102.46	103.94	0.0054245					103	37	4	0	0	0	1.1135	1	13240	13240		6.001	0.30226	1	523140	+		36769	25417	25163	25216	42443	42443					0.14452938502040524
KYVRKKYRFEL	11	Unmodified	_KYVRKKYRFEL_					0	0	0			REV__ENSG00000162105|ENST00000601538|SHANK2	REV__ENSG00000162105|ENST00000601538|SHANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.9677429199219	3	510.636549	1528.88782	0.22157	0.00011314	-3.0883	-0.001577	-2.8667	-0.0014639	510.6341188166971	103.2	1.4715	103.03	102.46	103.93	-0.17034					118	35	5	0	0	0	1.0996	1	12888	12888		11.455	2.2428	1	318810	+		36770	25417	25163	25216	42444	42444					0.14452938502040524
KYWMMTEFRSF	11	Unmodified	_KYWMMTEFRSF_					0	0	0		nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.28387451171875	3	509.237069	1524.68938	-0.7398	-0.00037673	-3.0723	-0.0015645	-3.8121	-0.0019413	509.2349452866137	46.455	0.36684	46.253	46.005	46.372	-0.20226					18	9	4	0	0	0	0.024851	1	4449	4449		15.921	6.2745	1	349560			36771	18405	25164	25217	42445	42445					-0.051979864634404294
KYYLVVELSKR	11	Unmodified	_KYYLVVELSKR_					0	0	0			REV__ENSG00000128596|ENST00000297788|CCDC136	REV__ENSG00000128596|ENST00000297788|CCDC136	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.9399719238281	3	466.609889	1396.80784	0.19291	9.0016E-05	-3.9505	-0.0018433	-3.7576	-0.0017533	466.6079363438645	99.826	0.91731	99.837	99.179	100.1	0.010109					66	22	4	0	0	0	1.0592	1	12756	12756		22.562	4.0305	1	854030	+		36772	22999	25165	25218	42446	42446					0.12530452108194368
LAAADLLFL	9	Unmodified	_LAAADLLFL_					0	0	0		ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.785400390625	2	473.784036	945.553519	0.22494	0.00010657	3.3573	0.0015906	3.5822	0.0016972	473.78551857219463	93.032	2.1013	93.04	92.225	94.327	0.0077209					105	50	4	0	0	0	0.088511	1	11705	11705		114.59	2.9376	1	4054900			36773	8324	25166	25219	42447	42447					0.07856430079709753
LAAAERDL	8	Unmodified	_LAAAERDL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.7376708984375	2	429.737617	857.460681	-0.65623	-0.00028201	1.1267	0.00048417	0.47043	0.00020216	429.7382071974735	24.763	1.4821	24.763	24.385	25.867	0					70	34	5	0	0	0	0.38451	1	1140	1140		99.375	10.732	1	5727100			36774	4004	25167	25220	42448	42448					0.026249253463333844
LAAAFFST	8	Unmodified	_LAAAFFST_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.25872802734375	2	414.218529	826.422505	0.15386	6.3732E-05	3.917	0.0016225	4.0709	0.0016862	414.2208810798529	39.058	0.49989	38.833	38.483	38.983	-0.2257					22	13	3	0	0	0	0.027866	1	3213	3213		71.378	0	1	113640			36775	9159	25168	25221	42449	42449					0.002350394316636084
LAAAGAAEQL	10	Unmodified	_LAAAGAAEQL_					0	0	0		ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.7507019042969	2	457.750724	913.486896	-0.80997	-0.00037076	1.4515	0.00066442	0.64152	0.00029365	457.7510301746539	30.5	1.2041	30.5	30.096	31.3	0					73	28	5	0	0	0	0.10389	1	1945	1945		134.81	16.068	1	3767600			36776	14839	25169	25222	42450	42450					0.026691945178072274
LAAAGAAEQL	10	Unmodified	_LAAAGAAEQL_					0	0	0		ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	457.750724	913.486896	-0.36799	-0.00016845	0.688	0.00031493	0.32001	0.00014649	457.75086296943664	30.444	1.0849	30.453	30.082	31.167	0.0086708					69	25	5	0	0	0	0.26127	1	1924	1924		113.41	14.037	1	3511700			36777	14839	25169	25222	42451	42451					0.026691945178072274
LAAAGAAEQL	10	Unmodified	_LAAAGAAEQL_					0	0	0		ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	ENST00000467498.5_1_2:97215494-97216349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.75079345703125	2	457.750724	913.486896	-0.62862	-0.00028775	-2.3875	-0.0010929	-3.0161	-0.0013806	457.7510047365146	30.175	1.1217	30.249	29.838	30.96	0.074316					74	26	4	0	0	0	0.48123	1	1858	1858		90.37	7.6193	1	3016100			36778	14839	25169	25222	42452	42452					0.026691945178072274
LAAAGRRGP	9	Unmodified	_LAAAGRRGP_					0	0	0			REV__ENSG00000170275|ENST00000320954|CRTAP	REV__ENSG00000170275|ENST00000320954|CRTAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.8851623535156	2	434.759218	867.503883	-0.18908	-8.2203E-05	0.38248	0.00016629	0.1934	8.4084E-05	434.75949622871013	20.163	0.86996	20.059	19.791	20.661	-0.10477					47	17	4	0	0	0	0.024466	1	515	515		12.207	0	1	198720	+		36779	26453	25170	25223	42453	42453					0.06483159914273529
LAAALPSAGLG	11	Unmodified	_LAAALPSAGLG_					0	0	0		ENST00000530238.5_1_11:66105966-66109705:-|nuORF	ENST00000530238.5_1_11:66105966-66109705:-|nuORF	ENST00000530238.5_1_11:66105966-66109705:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.3026428222656	2	470.776742	939.538931	-0.68438	-0.00032219	1.1899	0.0005602	0.50556	0.00023801	470.7770491129277	67.208	0.7121	66.969	66.796	67.508	-0.23814					20	16	2	0	0	0	0.024747	1	7795	7795		39.253	0	1	253690			36780	16227	25171	25224	42454	42454					0.06674357931581198
LAAARGAEAT	10	Unmodified	_LAAARGAEAT_					0	0	0			REV__ENST00000532946.1_1_11:830599-832843:-|nuORF	REV__ENST00000532946.1_1_11:830599-832843:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.76416015625	2	465.753798	929.493044	-0.75682	-0.00035249	-0.015558	-7.2461E-06	-0.77238	-0.00035974	465.7537360270642	33.361	0.95258	33.361	32.941	33.894	0					62	25	3	0	0	0	0.03519	1	2429	2429		39.253	16.21	1	2298400	+		36781	34591	25172	25225	42455	42455					0.025477127493331864
LAAARLAAA	9	Unmodified	_LAAARLAAA_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.2588806152344	2	414.25852	826.502486	-1.2596	-0.00052179	1.0763	0.00044585	-0.18332	-7.5943E-05	414.2589286901426	38.699	1.517	38.534	38.251	39.768	-0.16466					82	40	4	0	0	0	0.11848	4	3208	3208;3220;3232;3245		106.42	21.056	1	11548000			36782	7641	25173	25226	42456;42457;42458;42459	42456					0.08229525825493056
LAAARLAAA	9	Unmodified	_LAAARLAAA_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.2583312988281	2	414.25852	826.502486	-0.75477	-0.00031267	0.45639	0.00018906	-0.29838	-0.00012361	414.2586909273573	38.818	1.3286	38.597	38.256	39.584	-0.22149					81	34	4	0	0	0	0.074956	2	3253	3226;3253		119.56	22.084	1	10029000			36783	7641	25173	25226	42460;42461	42461					0.08229525825493056
LAAARLAAA	9	Unmodified	_LAAARLAAA_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.2587585449219	2	414.25852	826.502486	0.1277	5.2899E-05	-0.27035	-0.00011199	-0.14265	-5.9094E-05	414.2583606313065	38.807	0.77727	38.582	38.282	39.059	-0.2257					64	20	5	0	0	0	0.074956	3	3237	3201;3225;3237		119.56	18.345	1	9651000			36784	7641	25173	25226	42462;42463;42464	42464					0.08229525825493056
LAAAVPTAP	9	Unmodified	_LAAAVPTAP_					0	0	0		ENSG00000050165|ENST00000683431|DKK3;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3;ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.7384338378906	2	405.739628	809.464704	-0.67	-0.00027185	0.29898	0.00012131	-0.37102	-0.00015054	405.7396250716856	62.722	0.80241	62.483	62.293	63.096	-0.23926					44	21	3	0	0	0	0.33184	1	7272	7272		71.378	2.8932	1	2944500			36785	1138;16118	25174	25227	42465	42465					0.05235014840036456
LAAAVPTAP	9	Unmodified	_LAAAVPTAP_					0	0	0		ENSG00000050165|ENST00000683431|DKK3;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3;ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENSG00000050165|ENST00000683431|DKK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.73956298828125	2	405.739628	809.464704	1.1076	0.0004494	-1.279	-0.00051894	-0.17139	-6.9541E-05	405.7389405805362	62.403	0.93373	62.466	62.201	63.135	0.062763					51	23	3	0	0	0	0.75282	2	7202	7163;7202		42.474	3.6683	1	3524300			36786	1138;16118	25174	25227	42466;42467	42467					0.05235014840036456
LAADFLRR	8	Unmodified	_LAADFLRR_					0	0	0		ENST00000499217.6_1_15:74753929-74754052:+|nuORF	ENST00000499217.6_1_15:74753929-74754052:+|nuORF	ENST00000499217.6_1_15:74753929-74754052:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.801025390625	2	481.282526	960.550499	-0.57052	-0.00027458	2.8746	0.0013835	2.304	0.0011089	481.28391610788776	94.393	0.28629	94.399	94.247	94.533	0.0059891					10	6	2	0	0	0	0.027866	1	11932	11932		33.516	0	1	45163			36787	15637	25175	25228	42468	42468					0.06864599745563282
LAAEEKIV	8	Unmodified	_LAAEEKIV_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7573547363281	2	436.758018	871.501483	0.6979	0.00030481	-0.31226	-0.00013638	0.38564	0.00016843	436.75775550115674	66.149	0.3488	66.149	65.875	66.224	0					19	8	3	0	0	0	0.71833	1	7868	7868		65.803	7.9919	1	1014400			36788	3413	25176	25229	42469	42469					0.0605926666595451
LAAEEPRR	8	Unmodified	_LAAEEPRR_					0	0	0			REV__ENSG00000135378|ENST00000257836|PRRG4	REV__ENSG00000135378|ENST00000257836|PRRG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.26312255859375	2	471.261791	940.509028	0.53665	0.0002529	-0.72221	-0.00034035	-0.18557	-8.7451E-05	471.26147683140755	26.107	1.2944	26.188	25.665	26.96	0.081291					90	30	4	0	0	0	0.74904	1	1286	1286		63.306	0	1	4550900	+		36789	23537	25177	25230	42470	42470					0.036394189862335224
LAAEIVTPE	9	Unmodified	_LAAEIVTPE_					0	0	0		ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7896423339844	2	471.760758	941.506963	-0.1917	-9.0437E-05	-4.2379	-0.0019993	-4.4296	-0.0020897	471.75871693691255	48.003	0.25876	47.85	47.764	48.023	-0.15301					10	7	2	0	0	0	0.024412	1	4868	4868		40.573	7.0796	1	198350			36790	7793	25178	25231	42471	42471					0.03386945457771162
LAAEKVNPQ	9	Unmodified	_LAAEKVNPQ_					0	0	0			REV__nc|ENSG00000163482|Q9NRP7-2|STK36	REV__nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7582702636719	2	485.271824	968.529095	0.18722	9.0853E-05	-3.1198	-0.001514	-2.9326	-0.0014231	485.2709970243932	72.064	0.18114	72.074	71.988	72.169	0.0097733					7	4	2	0	0	0	0.024436	1	8685	8685		30.504	0	1	78684	+		36791	25572	25179	25232	42472	42472					0.043571699261860886
LAAELAHVV	9	Unmodified	_LAAELAHVV_					0	0	0		ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;nc|ENSG00000135439|Q99490-2|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7724914550781	2	461.77146	921.528367	1.1331	0.00052325	1.1899	0.00054948	2.3231	0.0010727	461.77169065097365	98.477	0.98392	98.475	98.139	99.123	-0.0020752					47	22	3	0	0	0	0.75282	1	12486	12486		42.474	3.453	1	682700			36792	4894	25180	25233	42473	42473					0.0644637527714167
LAAEPELQV	9	Unmodified	_LAAEPELQV_					0	0	0		nc|ENSG00000149313|Q9NRN7-2|AASDHPPT;ENSG00000149313|ENST00000278618|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.266207	968.517862	-0.75088	-0.00036438	-0.7868	-0.00038181	-1.5377	-0.00074619	485.2631291451461	44.169	0.16892	44.206	44.072	44.241	0.0369					8	4	3	0	0	0	0.024	1	4127	4127		76.847	27.405	1	74327			36793	6084	25181	25234	42474	42474					0.0323434783203993
LAAERGALLV	10	Unmodified	_LAAERGALLV_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000485456.5_1_9:140007511-140008978:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7921447753906	2	506.811116	1011.60768	-1.1491	-0.00058239	-0.5229	-0.00026501	-1.672	-0.0008474	506.8106435761419	43.794	0.60928	43.794	43.511	44.12	0					35	16	3	0	0	0	0.03519	1	4177	4177		96.19	5.4138	1	723260			36794	8693	25182	25235	42475	42475					0.1023402223128187
LAAERGALLV	10	Unmodified	_LAAERGALLV_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000485456.5_1_9:140007511-140008978:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7925720214844	2	506.811116	1011.60768	-1.2889	-0.00065325	-1.855	-0.00094012	-3.1439	-0.0015934	507.31153203862834	44.467	0.67265	44.322	43.994	44.666	-0.14471					26	19	2	0	0	0	0.03519	1	4275	4275		131.03	51.58	1	1302400			36795	8693	25182	25235	42476	42476					0.1023402223128187
LAAERGALLV	10	Unmodified	_LAAERGALLV_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000485456.5_1_9:140007511-140008978:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.79229736328125	2	506.811116	1011.60768	-1.0435	-0.00052885	-0.11757	-5.9584E-05	-1.161	-0.00058843	506.81082165196574	43.901	0.49656	43.756	43.534	44.031	-0.14471					34	13	3	0	0	0	0.03519	1	4162	4162		96.19	5.4138	1	649070			36796	8693	25182	25235	42477	42477					0.1023402223128187
LAAERGALLV	10	Unmodified	_LAAERGALLV_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000485456.5_1_9:140007511-140008978:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.79150390625	2	506.811116	1011.60768	-0.29882	-0.00015144	-2.1254	-0.0010772	-2.4242	-0.0012286	506.809729616141	44.522	0.37488	44.559	44.34	44.715	0.0369					18	10	2	0	0	0	0.03519	1	4200	4200		101.6	27.346	1	570360			36797	8693	25182	25235	42478	42478					0.1023402223128187
LAAFYCLCS	9	Unmodified	_LAAFYCLCS_					0	0	0		ENST00000289371.10_1_2:100016435-100016543:+|nuORF	ENST00000289371.10_1_2:100016435-100016543:+|nuORF	ENST00000289371.10_1_2:100016435-100016543:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.7230529785156	2	495.724806	989.43506	-0.1823	-9.037E-05	-4.0856	-0.0020253	-4.2679	-0.0021157	495.7226667960417	47.744	1.2398	47.591	47.265	48.505	-0.15301					89	36	4	0	0	0	0.4855	1	4809	4809		60.294	2.064	1	7954500			36798	11776	25183	25236	42479	42479					-0.060080084919604815
LAAGQLGNMH	10	Unmodified	_LAAGQLGNMH_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3004455566406	2	506.255651	1010.49675	-0.73903	-0.00037414	0.69198	0.00035032	-0.047049	-2.3819E-05	506.75696142539863	32.551	0.18757	32.551	32.418	32.606	0					6	4	2	0	0	0	0.03519	1	2268	2268		44.117	13.613	1	71489			36799	11009	25184	25237	42480	42480					-0.008079407484729018
LAAGSGWRRA	10	Unmodified	_LAAGSGWRRA_					0	0	0		ENSG00000203772|ENST00000685335|SPRN	ENSG00000203772|ENST00000685335|SPRN	ENSG00000203772|ENST00000685335|SPRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8004150390625	2	522.788507	1043.56246	-0.45231	-0.00023646	-1.8554	-0.00096997	-2.3077	-0.0012064	522.7873884221981	49.246	0.60963	49.093	48.719	49.328	-0.15277					26	16	2	0	0	0	0.03519	1	4996	4996		29.15	0	1	489520			36800	10280	25185	25238	42481	42481					0.042422164887511826
LAAIKKIP	8	Unmodified	_LAAIKKIP_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7135925292969	2	427.297114	852.579674	0.028265	1.2078E-05	0.14595	6.2363E-05	0.17421	7.444E-05	427.2971657396392	31.268	0.32108	31.337	31.124	31.445	0.068962					11	7	2	0	0	0	0.027866	1	1994	1994		21.702	7.0382	1	78948			36801	3147	25186	25239	42482	42482					0.14748744041844475
LAAILASKGLG	11	Unmodified	_LAAILASKGLG_					0	0	0			REV__ENSG00000167378|ENST00000422989|IRGQ	REV__ENSG00000167378|ENST00000422989|IRGQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2922668457031	2	507.321317	1012.62808	-0.45736	-0.00023203	0.097599	4.9514E-05	-0.35976	-0.00018251	507.32116768232777	51.988	0.48561	51.841	51.609	52.095	-0.14735					28	13	3	0	0	0	0.024743	1	5553	5553		14.865	0	1	430790	+		36802	26136	25187	25240	42483	42483					0.12227192891089089
LAAIQQNL	8	Unmodified	_LAAIQQNL_					0	0	0			REV__ENSG00000187231|ENST00000428443|SESTD1	REV__ENSG00000187231|ENST00000428443|SESTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801208496094	2	435.75581	869.497067	-0.35478	-0.0001546	-0.19483	-8.4897E-05	-0.54961	-0.0002395	435.75584308513885	38.876	1.1226	38.777	38.358	39.48	-0.098755					61	30	4	0	0	0	0.027866	1	3218	3218		13.775	0	1	1287200	+		36803	27923	25188	25241	42484	42484					0.057098022430295714
LAAITKSLAM	10	Unmodified	_LAAITKSLAM_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80340576171875	2	509.801903	1017.58925	0.28678	0.0001462	3.2196	0.0016413	3.5063	0.0017875	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	1.0816	1	10257	10257		35.152	6.0025	1	3746700	+		36804	24307	25189	25242	42485	42485					0.08116144265068215
LAAKCCLGL	9	Unmodified	_LAAKCCLGL_					0	0	0		ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.896484375	2	446.243166	890.47178	-0.39677	-0.00017706	1.5773	0.00070387	1.1805	0.00052681	446.2435840918095	24.102	0.25862	24.102	23.951	24.209	0					11	5	3	0	0	0	0.024412	1	1026	1026		31.955	20.444	1	47516			36805	4034	25190	25243	42486	42486					0.022162881246003963
LAAKCCLGL	9	Unmodified	_LAAKCCLGL_					0	0	0		ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	446.243166	890.47178	-0.23907	-0.00010669	1.0866	0.00048491	0.84757	0.00037822	446.24357924516164	23.889	0.51159	23.71	23.356	23.868	-0.17989	-0.20502	0.00033969	NaN	31.955	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50718			36806	4034	25190	25243							0.022162881246003963
LAAKCCLGL	9	Unmodified	_LAAKCCLGL_					0	0	0		ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	ENSG00000124249|ENST00000372861|KCNK15	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	446.243166	890.47178	2.0436	0.00091196	-0.79051	-0.00035276	1.2531	0.0005592	446.24272592770893	23.929	0.87467	23.749	23.411	24.285	-0.18089	-0.16607	-0.0013356	NaN	31.955	22	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60178			36807	4034	25190	25243							0.022162881246003963
LAALHCSSV	9	Unmodified	_LAALHCSSV_					0	0	0		ENST00000367434.4_1_1:193155339-193155666:-|nuORF	ENST00000367434.4_1_1:193155339-193155666:-|nuORF	ENST00000367434.4_1_1:193155339-193155666:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7481994628906	2	450.73402	899.453487	-0.20178	-9.095E-05	0.40773	0.00018378	0.20595	9.2829E-05	450.73477740227	30.918	0.46178	30.992	30.792	31.254	0.074314					13	10	2	0	0	0	0.022643	1	1999	1999		88.643	20.158	1	28469			36808	12857	25191	25244	42487	42487					-0.00026130525748158107
LAALHLAPK	9	Unmodified	_LAALHLAPK_					0	0	0			REV__ENSG00000204291|ENST00000375001|COL15A1	REV__ENSG00000204291|ENST00000375001|COL15A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.789794921875	2	467.297645	932.580737	-0.3627	-0.00016949	4.0725	0.0019031	3.7098	0.0017336	467.2981912502841	27.187	0.29322	27.187	26.993	27.286	0					11	7	2	0	0	0	0.024541	1	1471	1471		19.36	11.67	1	48124	+		36809	28586	25192	25245	42488	42488					0.11174958410742875
LAALHNMA	8	Unmodified	_LAALHNMA_					0	0	0		ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.7504577636719	2	420.723455	839.432358	-0.28003	-0.00011782	-3.2692	-0.0013754	-3.5493	-0.0014933	420.72191752137155	41.779	0.58662	41.549	41.353	41.939	-0.22991					23	15	2	0	0	0	0.027866	1	3749	3749		29.842	0	1	182990			36810	6051	25193	25246	42489	42489					0.006219041653821478
LAALHSLTA	9	Unmodified	_LAALHSLTA_					0	0	0		nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.7635192871094	2	448.763635	895.512717	-0.32016	-0.00014368	0.5422	0.00024332	0.22204	9.9643E-05	448.7636697300834	48.296	0.89628	48.296	48.037	48.934	0					52	25	3	0	0	0	0.20304	1	4913	4913		88.643	6.3378	1	2697300			36811	6459	25194	25247	42490	42490					0.06078088760079936
LAALHSLTA	9	Unmodified	_LAALHSLTA_					0	0	0		nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	448.763635	895.512717	-0.34527	-0.00015495	0.46426	0.00020834	0.11899	5.3397E-05	448.76369193574305	48.465	0.80701	48.312	48.057	48.864	-0.15301	0.036525	-2.8035E-05	NaN	88.643	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2508000			36812	6459	25194	25247							0.06078088760079936
LAALHSLTA	9	Unmodified	_LAALHSLTA_					0	0	0		nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	448.763635	895.512717	-0.32499	-0.00014584	0.51322	0.00023032	0.18824	8.4474E-05	448.7636019174013	48.151	0.82619	48.218	47.903	48.729	0.066795	-0.057282	1.5913E-05	NaN	88.643	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2210800			36813	6459	25194	25247							0.06078088760079936
LAALKKAL	8	Unmodified	_LAALKKAL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.2896423339844	2	414.289288	826.564024	-0.066082	-2.7377E-05	0.37819	0.00015668	0.31211	0.00012931	414.28931214606536	34.387	0.6573	34.163	33.923	34.58	-0.22412					35	16	3	0	0	0	0.28298	1	2534	2534		119.22	23.173	1	1550200			36814	7808;4064	25195	25248	42491	42491					0.14380457524782742
LAALKKAL	8	Unmodified	_LAALKKAL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.2893981933594	2	414.289288	826.564024	-0.30791	-0.00012756	0.80888	0.00033511	0.50097	0.00020755	414.28946045128123	34.418	0.91647	34.211	33.895	34.812	-0.20696					47	22	4	0	0	0	0.28298	1	2537	2537		119.22	23.173	1	1379400			36815	7808;4064	25195	25248	42492	42492					0.14380457524782742
LAALKKAL	8	Unmodified	_LAALKKAL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3;ENSG00000184357|ENST00000331442|H1-5;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4;ENSG00000124610|ENST00000244573|H1-1	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.2892150878906	2	414.289288	826.564024	-0.53032	-0.0002197	0.76093	0.00031524	0.23061	9.5539E-05	414.28943725833494	34.335	0.87459	34.159	33.896	34.771	-0.17557					43	21	3	0	0	0	0.34196	1	2507	2507		105.27	21.982	1	1189700			36816	7808;4064	25195	25248	42493	42493					0.14380457524782742
LAALLFAF	8	Unmodified	_LAALLFAF_					0	0	0		ENST00000035307.6_1_7:150930130-150930175:+|nuORF	ENST00000035307.6_1_7:150930130-150930175:+|nuORF	ENST00000035307.6_1_7:150930130-150930175:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.54827880859375	2	433.262739	864.510926	0.59997	0.00025994	3.0866	0.0013373	3.6866	0.0015973	433.2655637716464	24.485	0.2298	24.563	24.455	24.685	0.078344					5	4	2	0	0	0	0.027866	1	1030	1030		16.705	11.618	1	7042.9			36817	11105	25196	25249	42494	42494					0.07325079742133767
LAALLLPIM	9	Unmodified	_LAALLLPIM_					0	0	0			REV__nc|ENSG00000105612|O00115-2|DNASE2	REV__nc|ENSG00000105612|O00115-2|DNASE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2264709472656	2	477.806457	953.598361	-0.14801	-7.0721E-05	3.4963	0.0016705	3.3483	0.0015998	477.80788871437863	34.668	0.65563	34.663	34.375	35.03	-0.0045624					31	16	3	0	0	0	0.024289	1	2609	2609		39.021	12.329	1	143640	+		36818	21543	25197	25250	42495	42495					0.11970537621402855
LAALLPGGQ	9	Unmodified	_LAALLPGGQ_					0	0	0		ENST00000355540.7_1_7:98524984-98527672:+|nuORF	ENST00000355540.7_1_7:98524984-98527672:+|nuORF	ENST00000355540.7_1_7:98524984-98527672:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.2270202636719	2	420.252903	838.491253	-0.55834	-0.00023464	0.65019	0.00027324	0.09185	3.86E-05	420.2532024338813	40.506	0.47081	40.356	40.189	40.66	-0.1497					20	12	2	0	0	0	0.024354	1	3518	3518		30.504	14.03	1	192580			36819	12650	25198	25251	42496	42496					0.06554703731376321
LAALLPGGQ	9	Unmodified	_LAALLPGGQ_					0	0	0		ENST00000355540.7_1_7:98524984-98527672:+|nuORF	ENST00000355540.7_1_7:98524984-98527672:+|nuORF	ENST00000355540.7_1_7:98524984-98527672:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.22760009765625	2	420.252903	838.491253	-0.11604	-4.8768E-05	0.38078	0.00016002	0.26473	0.00011126	420.25292477960375	40.603	0.43539	40.378	40.296	40.731	-0.22501					17	11	2	0	0	0	0.024412	1	3521	3521		31.955	18.996	1	222180			36820	12650	25198	25251	42497	42497					0.06554703731376321
LAALLPGGQ	9	Unmodified	_LAALLPGGQ_					0	0	0		ENST00000355540.7_1_7:98524984-98527672:+|nuORF	ENST00000355540.7_1_7:98524984-98527672:+|nuORF	ENST00000355540.7_1_7:98524984-98527672:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	420.252903	838.491253	0.25674	0.00010789	-2.8046	-0.0011786	-2.5478	-0.0010707	420.2531825429198	40.594	0.17674	40.594	40.516	40.692	0	0.14229	-0.0015378	NaN	16.473	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45938			36821	12650	25198	25251							0.06554703731376321
LAALLQRVV	9	Unmodified	_LAALLQRVV_					0	0	0			REV__nc|ENSG00000073150|Q96RD6-2|PANX2	REV__nc|ENSG00000073150|Q96RD6-2|PANX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2794494628906	2	491.824027	981.633501	-0.63874	-0.00031415	0.57385	0.00028223	-0.064888	-3.1914E-05	491.82401141007693	40.574	0.90557	40.597	40.349	41.254	0.023006					65	25	3	0	0	0	0.024466	1	3620	3620		33.516	1.5607	1	2656800	+		36822	20495	25199	25252	42498	42498					0.1419491647355926
LAALLVAF	8	Unmodified	_LAALLVAF_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.5425720214844	2	409.262739	816.510926	-0.24237	-9.9195E-05	-4.0333	-0.0016507	-4.2756	-0.0017499	409.26080983134415	22.489	0.36602	22.304	22.094	22.46	-0.18539					10	7	2	0	0	0	0.027866	1	771	771		33.493	26.3	1	40966			36823	1550	25200	25253	42499	42499					0.09533079742129758
LAALSVRPF	9	Unmodified	_LAALSVRPF_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.25775146484375	2	487.295102	972.575651	-0.97306	-0.00047417	-4.1483	-0.0020214	-5.1213	-0.0024956	487.29290486723704	23.087	0.41743	23.164	22.933	23.351	0.076241					23	9	3	0	0	0	0.024541	1	800	800		30.504	19.638	1	294470			36824	850	25201	25254	42500	42500					0.0882665454812468
LAALTTLVVI	10	Unmodified	_LAALTTLVVI_					0	0	0			REV__ENSG00000011638|ENST00000233047|LDAF1	REV__ENSG00000011638|ENST00000233047|LDAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8062744140625	2	507.333893	1012.65323	0.12355	6.2679E-05	-3.2189	-0.001633	-3.0953	-0.0015704	507.3321349964818	20.69	0.39185	20.522	20.296	20.688	-0.16774					17	7	3	0	0	0	0.03519	1	565	565		25.45	1.2474	1	74388	+		36825	19938	25202	25255	42501	42501					0.14741247693677906
LAAMLPPL	8	Unmodified	_LAAMLPPL_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.5220031738281	2	413.248775	824.482997	1.8267	0.00075489	3.2511	0.0013435	5.0778	0.0020984	413.249911460744	36.936	0.58231	36.936	36.613	37.195	0					28	14	3	0	0	0	0.027866	1	2979	2979		33.493	0	1	155020			36826	1536	25203	25256	42502	42502					0.06373433490398384
LAAMLPPL	8	Unmodified	_LAAMLPPL_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.52203369140625	2	413.248775	824.482997	0.44643	0.00018449	4.2953	0.001775	4.7418	0.0019595	413.2504360776695	36.784	0.54436	36.72	36.47	37.014	-0.063385					24	13	2	0	0	0	0.027866	1	2938	2938		24.504	0	1	203750			36827	1536	25203	25256	42503	42503					0.06373433490398384
LAAPGSTGKHK	11	Unmodified	_LAAPGSTGKHK_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8053588867188	2	533.803823	1065.59309	-1.0778	-0.00057535	3.8646	0.0020629	2.7867	0.0014876	533.8059632694876	44.898	1.1267	44.898	44.519	45.646	0					122	32	5	0	0	0	0.75995	1	4333	4333		60.118	3.3972	1	45576000	+		36828	26011	25204	25257	42504	42504					0.06291950083118536
LAAPRQNL	8	Unmodified	_LAAPRQNL_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MSMS	OPSCC_39_ClassI_Rep-1	1	441.76123046875	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.872	1	38.872	38.372	39.372	0								0	0	0	0.47049	1	3292	3292		57.811	6.4758	1		+		36829	21230	25205	25258	42505	42505					0.06280624337171048
LAAQGHSAI	9	Unmodified	_LAAQGHSAI_					0	0	0		ENST00000527322.5_1_11:75155472-75168807:-|nuORF	ENST00000527322.5_1_11:75155472-75168807:-|nuORF	ENST00000527322.5_1_11:75155472-75168807:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2383117675781	2	434.237784	866.461016	-0.46118	-0.00020026	0.67293	0.00029221	0.21175	9.1949E-05	434.23807342612656	34.298	1.8944	34.349	33.571	35.465	0.050255					118	48	4	0	0	0	0.39228	1	2484	2484		66.429	4.3219	1	6995600			36830	16148	25206	25259	42506	42506					0.022443450661853603
LAAQGRHA	8	Unmodified	_LAAQGRHA_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.2307434082031	2	412.230294	822.446034	0.38571	0.000159	0.30645	0.00012633	0.69216	0.00028533	412.23037967870096	27.434	2.0819	27.434	26.531	28.613	0					138	52	4	0	0	0	0.95417	2	1494	1494;1507		44.531	12.576	1	8114200			36831	9226	25207	25260	42507;42508	42507					0.027708979888416252
LAAQGRHA	8	Unmodified	_LAAQGRHA_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.23101806640625	2	412.230294	822.446034	0.074438	3.0686E-05	0.64002	0.00026383	0.71445	0.00029452	412.23051145257693	27.319	2.4518	27.306	26.415	28.867	-0.012983					153	61	4	0	0	0	0.95417	2	1483	1483;1519		44.531	6.9464	1	6937900			36832	9226	25207	25260	42509;42510	42509					0.027708979888416252
LAAQGRHA	8	Unmodified	_LAAQGRHA_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.23065185546875	2	412.230294	822.446034	-0.48948	-0.00020178	1.1872	0.00048941	0.69775	0.00028763	412.23071113677236	27.154	2.5776	27.235	26.249	28.827	0.081293					138	64	4	0	0	0	0.96719	2	1403	1403;1427		42.474	7.2737	1	8910500			36833	9226	25207	25260	42511;42512	42511					0.027708979888416252
LAAQQLQLFFV	11	Unmodified	_LAAQQLQLFFV_					0	0	0			REV__ENSG00000135249|ENST00000257700|RINT1	REV__ENSG00000135249|ENST00000257700|RINT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.5790710449219	3	426.579929	1276.71796	1.0112	0.00043135	-3.1387	-0.0013389	-2.1275	-0.00090755	426.57854737301795	36.013	1.7982	35.815	35.366	37.164	-0.19829					129	47	4	0	0	0	1.018	1	2767	2767		22.562	2.9347	1	4843000	+		36834	23523	25208	25261	42513	42513					0.09066822499630689
LAAQVAHQ	8	Unmodified	_LAAQVAHQ_					0	0	0			REV__ENSG00000132622|ENST00000254963|HSPA12B	REV__ENSG00000132622|ENST00000254963|HSPA12B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2278747558594	2	419.232502	836.450451	-0.28893	-0.00012113	0.56028	0.00023489	0.27135	0.00011376	419.23254358530914	26.902	1.6641	26.889	25.577	27.241	-0.012983					74	40	3	0	0	0	0.027866	1	1241	1241		28.254	20.023	1	1613900	+		36835	23299	25209	25262	42514	42514					0.025683624117505133
LAARGELLL	9	Unmodified	_LAARGELLL_					0	0	0		ENSG00000103742|ENST00000352385|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3004150390625	2	478.300384	954.586216	-1.0606	-0.0005073	-0.16764	-8.0183E-05	-1.2283	-0.00058749	478.3002496219315	37.978	1.6944	38.005	37.372	39.067	0.027275					110	46	4	0	0	0	0.13494	1	3095	3095		102.77	3.3984	1	13748000			36836	2527	25210	25263	42515	42515					0.10710637202578255
LAARHRKF	8	Unmodified	_LAARHRKF_					0	0	0		ENST00000471717.1_1_7:99772169-99774834:-|nuORF;ENSG00000213420|ENST00000292377|GPC2	ENST00000471717.1_1_7:99772169-99774834:-|nuORF	ENST00000471717.1_1_7:99772169-99774834:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	499.80396	997.593367	0.31128	0.00015558	-1.3124	-0.00065593	-1.0011	-0.00050035	499.80357421878915	39.409	0.13725	39.409	39.357	39.495	0					5	3	2	0	0	0	0.027866	1	3391	3391		26.796	2.5934	1	32646			36837	10505	25211	25264	42516	42516					0.09447414593648773
LAARILLD	8	Unmodified	_LAARILLD_					0	0	0		ENST00000553741.5_1_14:21488585-21492212:-|nuORF;nc|ENSG00000165795|Q9UN36-3|NDRG2;ENSG00000165795|ENST00000556147|NDRG2	ENST00000553741.5_1_14:21488585-21492212:-|nuORF	ENST00000553741.5_1_14:21488585-21492212:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2662048339844	2	442.781828	883.549102	-0.38656	-0.00017116	0.63002	0.00027896	0.24346	0.0001078	442.781839276885	60.988	0.45248	60.775	60.421	60.873	-0.21339					17	11	2	0	0	0	0.027866	1	7000	7000		18.324	0.95945	1	114560			36838	7467	25212	25265	42517	42517					0.10266965656808225
LAARQWDASPL	11	Unmodified	_LAARQWDASPL_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.886474609375	3	409.887533	1226.64077	0.11489	4.709E-05	-3.4112	-0.0013982	-3.2963	-0.0013511	409.8861759658138	34.5	1.4092	34.55	34.213	35.623	0.050255					110	36	5	0	0	0	0.92638	1	2524	2524		50.034	7.6954	1	10789000	+		36839	27966	25213	25266	42518	42518					0.0365160428332274
LAARRAAPE	9	Unmodified	_LAARRAAPE_					0	0	0			REV__ENSG00000159147|ENST00000303071|DONSON	REV__ENSG00000159147|ENST00000303071|DONSON	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.77752685546875	2	477.777608	953.540663	0.26524	0.00012673	-1.1472	-0.00054811	-0.88196	-0.00042138	477.77724843167783	27.381	2.813	27.381	26.447	29.26	0					206	70	5	0	0	0	0.72875	1	1535	1535		44.117	3.3386	1	85113000	+		36840	25236	25214	25267	42519	42519					0.0620341174017085
LAARRAAPE	9	Unmodified	_LAARRAAPE_					0	0	0			REV__ENSG00000159147|ENST00000303071|DONSON	REV__ENSG00000159147|ENST00000303071|DONSON	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.77752685546875	2	477.777608	953.540663	-0.080074	-3.8258E-05	-0.84906	-0.00040566	-0.92914	-0.00044392	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.39228	1	1501	1501		66.429	2.222	1	79837000	+		36841	25236	25214	25267	42520	42520					0.0620341174017085
LAARRAAPE	9	Unmodified	_LAARRAAPE_					0	0	0			REV__ENSG00000159147|ENST00000303071|DONSON	REV__ENSG00000159147|ENST00000303071|DONSON	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7774353027344	2	477.777608	953.540663	-0.86432	-0.00041295	-0.014007	-6.692E-06	-0.87832	-0.00041964	477.77780002341314	27.145	2.5781	27.226	26.29	28.868	0.081293					199	64	5	0	0	0	0.39228	1	1432	1432		66.429	7.6473	1	98548000	+		36842	25236	25214	25267	42521	42521					0.0620341174017085
LAARRPPAR	9	Unmodified	_LAARRPPAR_					0	0	0		ENST00000294409.2_1_1:28995295-29010143:+|nuORF	ENST00000294409.2_1_1:28995295-29010143:+|nuORF	ENST00000294409.2_1_1:28995295-29010143:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.3522644042969	2	504.314692	1006.61483	-0.96969	-0.00048903	2.6731	0.0013481	1.7034	0.00085903	504.31521092355825	82.362	0.99229	82.222	81.486	82.478	-0.14014					39	22	3	0	0	0	0.024405	1	9891	9891		27.882	0	1	231110			36843	11815	25215	25268	42522	42522					0.11178799622359747
LAARRPPAR	9	Unmodified	_LAARRPPAR_					0	0	0		ENST00000294409.2_1_1:28995295-29010143:+|nuORF	ENST00000294409.2_1_1:28995295-29010143:+|nuORF	ENST00000294409.2_1_1:28995295-29010143:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.314692	1006.61483	0.5362	0.00027041	1.3398	0.00067569	1.876	0.0009461	504.3151395693918	82.448	0.73515	82.228	81.743	82.478	-0.22015	0.012701	-0.00056168	NaN	20.947	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230530			36844	11815	25215	25268							0.11178799622359747
LAARTAPAAL	10	Unmodified	_LAARTAPAAL_					0	0	0			REV__ENSG00000139370|ENST00000266771|SLC15A4	REV__ENSG00000139370|ENST00000266771|SLC15A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.75347900390625	2	477.790184	953.565815	1.2383	0.00059163	-1.0886	-0.00052013	0.14964	7.1499E-05	477.78938605543016	19.535	0.37199	19.535	19.317	19.689	0					12	7	2	0	0	0	0.03519	1	408	408		20.947	0	1	90452	+		36845	23940	25216	25269	42523	42523					0.0871746654272556
LAASAILNE	9	Unmodified	_LAASAILNE_					0	0	0			REV__ENSG00000196981|ENST00000330689|WDR5B	REV__ENSG00000196981|ENST00000330689|WDR5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2468566894531	2	451.2531	900.491647	-0.1342	-6.0558E-05	-3.6649	-0.0016538	-3.7991	-0.0017144	451.2498885657479	39.497	2.8473	39.333	38.829	41.676	-0.16459					113	75	3	0	0	0	0.5973	1	3362	3362		52.937	0	1	2496600	+		36846	28248	25217	25270	42524	42524					0.03742078660570769
LAASEKKL	8	Unmodified	_LAASEKKL_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.23193359375	2	430.26601	858.517468	-0.68656	-0.0002954	0.37785	0.00016257	-0.30871	-0.00013283	430.26609859187806	25.669	0.63971	25.669	25.403	26.043	0					23	14	3	0	0	0	0.027866	1	1287	1287		90.777	16.802	1	79955			36847	1807	25218	25271	42525	42525					0.08254972902852842
LAASEKKL	8	Unmodified	_LAASEKKL_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	430.26601	858.517468	0.53195	0.00022888	-0.20018	-8.613E-05	0.33177	0.00014275	430.26575454320226	25.675	0.42545	25.756	25.54	25.966	0.08009	0.076327	-0.00038738	NaN	90.777	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105910			36848	1807	25218	25271							0.08254972902852842
LAASEKKL	8	Unmodified	_LAASEKKL_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	430.26601	858.517468	-0.25631	-0.00011028	0.31453	0.00013533	0.058217	2.5049E-05	430.26594947780706	25.958	0.49038	25.722	25.425	25.916	-0.23603	0.042296	5.5541E-05	NaN	90.777	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66871			36849	1807	25218	25271							0.08254972902852842
LAASEKKL	8	Unmodified	_LAASEKKL_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	430.26601	858.517468	0.074596	3.2096E-05	-0.41753	-0.00017965	-0.34293	-0.00014755	430.26590688705704	25.724	0.45119	25.553	25.247	25.698	-0.17078	-0.12582	-0.00057441	NaN	90.777	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72272			36850	1807	25218	25271							0.08254972902852842
LAASEKKL	8	Unmodified	_LAASEKKL_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	430.26601	858.517468	-0.45469	-0.00019564	0.71376	0.00030711	0.25907	0.00011147	430.2662482986677	25.816	0.53351	25.644	25.324	25.857	-0.17151	-0.034784	0.00039909	NaN	90.777	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96197			36851	1807	25218	25271							0.08254972902852842
LAASGGRTLEP	11	Unmodified	_LAASGGRTLEP_					0	0	0			REV__ENST00000462321.1_1_2:131130401-131130452:+|nuORF	REV__ENST00000462321.1_1_2:131130401-131130452:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2940063476562	2	536.293288	1070.57202	-0.97981	-0.00052546	4.0777	0.0021869	3.0979	0.0016614	536.2954828197358	63.106	0.87074	63.106	62.651	63.522	0					68	22	4	0	0	0	0.9728	1	7387	7387		42.864	0.46813	1	16704000	+		36852	32899	25219	25272	42526	42526					0.03955939983643475
LAASRGVGLV	10	Unmodified	_LAASRGVGLV_					0	0	0		ENST00000582478.5_1_17:80008786-80009642:-|nuORF	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7900390625	2	471.790184	941.565815	0.082764	3.9047E-05	-0.97161	-0.00045839	-0.88884	-0.00041935	471.7897649574988	47.919	1.4407	47.919	47.529	48.969	0					126	42	5	0	0	0	0.64538	1	4863	4863		71.877	4.3838	1	49165000			36853	17180	25220	25273	42527	42527					0.09269466542764349
LAASRGVGLV	10	Unmodified	_LAASRGVGLV_					0	0	0		ENST00000582478.5_1_17:80008786-80009642:-|nuORF	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.78961181640625	2	471.790184	941.565815	-0.17756	-8.377E-05	-0.71055	-0.00033523	-0.8881	-0.000419	471.7898810981659	48.025	1.9384	47.872	47.542	49.48	-0.15301					138	55	4	0	0	0	0.42812	2	4856	4832;4856		95.815	21.56	1	48595000			36854	17180	25220	25273	42528;42529	42529					0.09269466542764349
LAATGARVLAA	11	Unmodified	_LAATGARVLAA_					0	0	0			REV__ENST00000525801.1_1_11:62379266-62379455:+|nuORF	REV__ENST00000525801.1_1_11:62379266-62379455:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.3080749511719	2	507.308741	1012.60293	-0.26039	-0.0001321	-1.191	-0.00060419	-1.4514	-0.00073629	507.3082857973226	43.417	1.8823	43.305	42.854	44.736	-0.11253					163	50	6	0	0	0	0.81602	2	3952	3952;3988		56.721	3.4693	1	110540000	+		36855	34423	25221	25274	42530;42531	42530					0.09713138088500273
LAATGARVLAA	11	Unmodified	_LAATGARVLAA_					0	0	0			REV__ENST00000525801.1_1_11:62379266-62379455:+|nuORF	REV__ENST00000525801.1_1_11:62379266-62379455:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3082275390625	2	507.308741	1012.60293	-0.8274	-0.00041975	-0.78171	-0.00039657	-1.6091	-0.00081632	507.3084751133819	43.57	1.8058	43.333	42.879	44.685	-0.23736					159	48	6	0	0	0	0.93615	1	4059	4059		49.442	1.5259	1	107780000	+		36856	34423	25221	25274	42532	42532					0.09713138088500273
LAATGARVLAA	11	Unmodified	_LAATGARVLAA_					0	0	0			REV__ENST00000525801.1_1_11:62379266-62379455:+|nuORF	REV__ENST00000525801.1_1_11:62379266-62379455:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.30810546875	2	507.308741	1012.60293	-1.0431	-0.00052917	-0.64497	-0.0003272	-1.6881	-0.00085637	507.3085410053728	43.586	1.6368	43.367	43.032	44.668	-0.21939					155	44	6	0	0	0	0.81602	1	3975	3975		56.721	1.2168	1	106880000	+		36857	34423	25221	25274	42533	42533					0.09713138088500273
LAATSISAPA	10	Unmodified	_LAATSISAPA_					0	0	0			REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2540588378906	2	451.2531	900.491647	-0.1016	-4.585E-05	1.9219	0.00086726	1.8203	0.00082141	451.2537863187369	36.676	1.0362	36.612	35.942	36.978	-0.063389					57	27	6	0	0	0	1.0004	1	2921	2921		45.952	3.4775	1	1340900	+		36858	27590	25222	25275	42534	42534					0.037420786605480316
LAATSISAPA	10	Unmodified	_LAATSISAPA_					0	0	0			REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	451.2531	900.491647	-0.1016	-4.585E-05	1.9219	0.00086726	1.8203	0.00082141	451.2537863187369	36.676	1.0362	36.612	35.942	36.978	-0.063389	0	0	NaN	45.952	57	27	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1340900	+		36859	27590	25222	25275							0.037420786605480316
LAATVAPPA	9	Unmodified	_LAATVAPPA_					0	0	0			REV__ENSG00000105327|ENST00000439096|BBC3	REV__ENSG00000105327|ENST00000439096|BBC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.7388610839844	2	405.739628	809.464704	0.1958	7.9443E-05	-0.27388	-0.00011112	-0.078078	-3.1679E-05	405.7393835161285	62.469	0.94591	62.469	62.25	63.196	0					51	26	3	0	0	0	0.64155	1	7265	7265		50.025	0	1	2975700	+		36860	21512	25223	25276	42535	42535					0.05235014840025087
LAATVAPPA	9	Unmodified	_LAATVAPPA_					0	0	0			REV__ENSG00000105327|ENST00000439096|BBC3	REV__ENSG00000105327|ENST00000439096|BBC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.7387390136719	2	405.739628	809.464704	-0.67	-0.00027185	0.29898	0.00012131	-0.37102	-0.00015054	405.7396250716856	62.722	0.80241	62.483	62.293	63.096	-0.23926					44	21	3	0	0	0	0.4855	1	7283	7283		60.294	2.4827	1	2944500	+		36861	21512	25223	25276	42536	42536					0.05235014840025087
LAATVAPPA	9	Unmodified	_LAATVAPPA_					0	0	0			REV__ENSG00000105327|ENST00000439096|BBC3	REV__ENSG00000105327|ENST00000439096|BBC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7387390136719	2	405.739628	809.464704	1.1076	0.0004494	-1.279	-0.00051894	-0.17139	-6.9541E-05	405.7389405805362	62.403	0.93373	62.466	62.201	63.135	0.062763					51	23	3	0	0	0	0.64155	1	7176	7176		50.025	0	1	3524300	+		36862	21512	25223	25276	42537	42537					0.05235014840025087
LAAVAAVLIS	10	Unmodified	_LAAVAAVLIS_					0	0	0		ENSG00000214376|ENST00000409977|VSTM5	ENSG00000214376|ENST00000409977|VSTM5	ENSG00000214376|ENST00000409977|VSTM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2974548339844	2	464.29731	926.580068	-0.4742	-0.00022017	0.62675	0.000291	0.15255	7.0828E-05	464.297463744517	84.868	0.79057	84.796	84.507	85.298	-0.072777					45	18	3	0	0	0	0.65054	1	10596	10596		71.296	10.324	1	1892600			36863	10553	25224	25277	42538	42538					0.1138411897103424
LAAVEAAVRK	10	Unmodified	_LAAVEAAVRK_					0	0	0		nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.Q1624Pfs*26|1|0.11|ENSG00000173898|chr11:66693067-66693086|GCTTCTTCACCTCTGCCTGG/-|frameshift_variant	nc|ENSG00000173898|O15020-2|SPTBN2	nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.801513671875	2	514.316566	1026.61858	-0.40637	-0.000209	-3.4066	-0.0017521	-3.813	-0.0019611	514.3147762135212	60.242	1.299	60.042	59.245	60.544	-0.20016					49	34	2	0	0	0	0.03519	1	6865	6865		42.396	10.866	1	3438500			36864	8423	25225	25278	42539	42539					0.10633424605566688
LAAVLLRL	8	Unmodified	_LAAVLLRL_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.8024597167969	2	434.802563	867.590573	-0.10355	-4.5025E-05	0.41901	0.00018219	0.31545	0.00013716	434.80258553449914	65.927	0.92402	65.686	65.414	66.338	-0.24145					64	22	4	0	0	0	0.67787	1	7552	7552		69.093	0	1	3442700	+		36865	22113	25226	25279	42540	42540					0.15148146416129293
LAAVNQKAFV	10	Unmodified	_LAAVNQKAFV_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2824096679688	2	530.811116	1059.60768	-0.32471	-0.00017236	-0.73715	-0.00039129	-1.0619	-0.00056364	530.8089462362316	39.795	0.21618	39.795	39.627	39.843	0					6	5	2	0	0	0	0.03519	1	3445	3445		35.618	24.107	1	62825			36866	3124	25227	25280	42541	42541					0.0802602223127451
LAAVREATQ	9	Unmodified	_LAAVREATQ_					0	0	0		nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7686462402344	2	479.769448	957.524344	-0.41663	-0.00019988	0.19726	9.4639E-05	-0.21937	-0.00010525	479.76948996008974	34.758	0.69121	34.736	34.357	35.049	-0.021767					62	17	6	0	0	0	0.10174	1	2627	2627		110.12	0.64154	1	4671900			36867	11090	25228	25281	42542	42542					0.04388285783431911
LAAVRGEQW	9	Unmodified	_LAAVRGEQW_					0	0	0		ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.27734375	2	515.277441	1028.54033	-0.037691	-1.9422E-05	-0.061026	-3.1445E-05	-0.098717	-5.0867E-05	515.2771962287305	46.012	0.5906	45.915	45.632	46.223	-0.096649					42	15	4	0	0	0	0.067814	2	4406	4406;4418		122.18	27.879	1	2799600			36868	1148	25229	25282	42543;42544	42543					0.02719992020342943
LAAVRGEQW	9	Unmodified	_LAAVRGEQW_					0	0	0		ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.27734375	2	515.277441	1028.54033	-0.73226	-0.00037732	0.26386	0.00013596	-0.46841	-0.00024136	515.2774240119874	46.117	0.7378	45.914	45.669	46.406	-0.20226					46	19	4	0	0	0	0.091713	2	4410	4410;4423		113.41	30.407	1	2742900			36869	1148	25229	25282	42545;42546	42545					0.02719992020342943
LAAVRGEQW	9	Unmodified	_LAAVRGEQW_					0	0	0		ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.277441	1028.54033	-0.31152	-0.00016052	-7.2513	-0.0037364	-7.5628	-0.0038969	515.7737769259102	45.938	0.13469	45.938	45.852	45.986	0	0.008832	-0.007139	NaN	122.18	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132930			36870	1148	25229	25282							0.02719992020342943
LAAVRGEQW	9	Unmodified	_LAAVRGEQW_					0	0	0		ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.277441	1028.54033	-0.2377	-0.00012248	0.12198	6.2853E-05	-0.11572	-5.9629E-05	515.2773212672403	46.21	0.94051	45.949	45.593	46.534	-0.26118	0.019817	0.00045952	NaN	122.18	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1663300			36871	1148	25229	25282							0.02719992020342943
LAAVSCKGVYL	11	Unmodified	_LAAVSCKGVYL_					0	0	0			REV__ENST00000227525.7_1_11:60690217-60690481:+|nuORF	REV__ENST00000227525.7_1_11:60690217-60690481:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3088989257812	2	562.312635	1122.61072	0.044339	2.4932E-05	-3.0547	-0.0017177	-3.0104	-0.0016928	562.3107990391446	87.524	1.615	87.524	87.152	88.767	0					122	38	4	0	0	0	0.48498	1	11105	11105		77.318	3.0625	1	2858300	+		36872	29386	25230	25283	42547	42547					0.0543152929376447
LAAVSCKGVYL	11	Unmodified	_LAAVSCKGVYL_					0	0	0			REV__ENST00000227525.7_1_11:60690217-60690481:+|nuORF	REV__ENST00000227525.7_1_11:60690217-60690481:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3113403320312	2	562.312635	1122.61072	0.47833	0.00026897	-3.5216	-0.0019802	-3.0433	-0.0017113	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.32544	1	11003	11003		87.696	2.5356	1	3090500	+		36873	29386	25230	25283	42548	42548					0.0543152929376447
LAAVTDWEA	9	Unmodified	_LAAVTDWEA_					0	0	0		ENST00000492208.1_1_7:152781-153439:+|nuORF	ENST00000492208.1_1_7:152781-153439:+|nuORF	ENST00000492208.1_1_7:152781-153439:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2586669921875	2	488.242732	974.470912	0.12751	6.2255E-05	-0.89497	-0.00043696	-0.76747	-0.00037471	488.24122733054645	41.449	0.29124	41.449	41.36	41.652	0					13	7	3	0	0	0	0.024436	1	3733	3733		38.806	9.6566	1	99461			36874	15477	25231	25284	42549	42549					-0.017345117190984638
LAAWAKKVE	9	Unmodified	_LAAWAKKVE_					0	0	0			REV__ENST00000588685.1_1_19:56989231-56989342:+|nuORF	REV__ENST00000588685.1_1_19:56989231-56989342:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2414855957031	2	508.300384	1014.58622	-0.08465	-4.3028E-05	-3.874	-0.0019692	-3.9587	-0.0020122	508.29656037954084	36.611	0.11928	36.406	36.323	36.443	-0.20518					4	2	2	0	0	0	0.024457	1	2882	2882		29.15	2.4566	1	21229	+		36875	35653	25232	25285	42550	42550					0.07950637202554844
LAAWRPVKA	9	Unmodified	_LAAWRPVKA_					0	0	0		ENST00000416764.5_1_3:185686359-185693154:+|nuORF;ENST00000306399.3_1_3:185686359-185697623:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7643127441406	2	506.308544	1010.60253	-0.38575	-0.00019531	1.5115	0.00076529	1.1258	0.00056998	506.30944336536936	49.314	0.61263	49.214	48.803	49.416	-0.1008					29	15	3	0	0	0	0.024535	1	4957	4957		18.324	0	1	190720			36876	12001	25233	25286	42551	42551					0.0976576315931652
LAAYKHLL	8	Unmodified	_LAAYKHLL_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2675476074219	2	464.78437	927.554188	0.14761	6.8606E-05	-1.9652	-0.00091339	-1.8176	-0.00084479	464.78123183593243	81.661	0.24096	81.687	81.578	81.819	0.025711					6	5	2	0	0	0	0.027866	1	10093	10093		44.531	0	1	35711	+		36877	25603	25234	25287	42552	42552					0.08751269519416383
LACAARIVR	9	Unmodified	_LACAARIVR_					0	0	0			REV__ENSG00000154760|ENST00000285013|SLFN13	REV__ENSG00000154760|ENST00000285013|SLFN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.75921630859375	2	486.792204	971.569854	-0.74337	-0.00036187	-0.27791	-0.00013528	-1.0213	-0.00049715	486.79194166200443	37.54	0.89951	37.572	37.303	38.202	0.032269					45	24	3	0	0	0	0.024354	1	3012	3012		38.806	1.647	1	2074500	+		36878	24973	25235	25288	42553	42553					0.08293232764822278
LACCPGDQKP	10	Unmodified	_LACCPGDQKP_					0	0	0		ENSG00000176438|ENST00000682763|SYNE3;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	ENSG00000176438|ENST00000682763|SYNE3	ENSG00000176438|ENST00000682763|SYNE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.263916015625	2	516.23607	1030.45759	-0.64561	-0.00033329	1.6105	0.00083139	0.96488	0.00049811	516.2372146674221	29.603	0.56573	29.607	29.351	29.916	0.0031376					22	13	3	0	0	0	0.03519	1	1790	1790		25.574	0	1	141750			36879	8640	25236	25289	42554	42554					-0.05642409094343748
LACGVCLLNV	10	Unmodified	_LACGVCLLNV_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2861633300781	2	502.767006	1003.51946	-0.46547	-0.00023402	-3.2294	-0.0016236	-3.6948	-0.0018576	502.76529402843545	63.165	0.20442	62.926	62.821	63.025	-0.23926					5	4	2	0	0	0	0.03519	1	7332	7332		53.351	14.33	1	124280			36880	11035	25237	25290	42555	42555					0.017839423247892228
LACLCLSPN	9	2 Carbamidomethyl (C)	_LAC(Carbamidomethyl (C))LC(Carbamidomethyl (C))LSPN_	LAC(1)LC(1)LSPN		LAC(56)LC(56)LSPN		0	2	0		ENST00000520547.3_1_10:81273304-81273505:+|nuORF	ENST00000520547.3_1_10:81273304-81273505:+|nuORF	ENST00000520547.3_1_10:81273304-81273505:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2515869140625	2	524.25172	1046.48889	-0.22426	-0.00011757	0.01276	6.6893E-06	-0.2115	-0.00011088	524.2515779513772	53.725	0.68845	53.528	53.201	53.889	-0.19739					51	20	3	0	0	0	0.55828	1	5639	5639		55.504	6.0627	1	4528800			36881	15981	25238	25291	42556	42556	214;215				-0.03249836060240341
LACLLRAL	8	Unmodified	_LACLLRAL_					0	0	0		ENST00000397728.7_1_21:47609133-47609427:-|nuORF	ENST00000397728.7_1_21:47609133-47609427:-|nuORF	ENST00000397728.7_1_21:47609133-47609427:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.7398376464844	2	436.772948	871.531344	0.29108	0.00012713	-0.70835	-0.00030939	-0.41727	-0.00018225	436.77269135556384	67.038	0.9364	67.062	66.812	67.748	0.023911					38	22	2	0	0	0	0.027866	1	7904	7904		37.028	8.7742	1	199900			36882	13601	25239	25292	42557	42557					0.0904392713028983
LACLRHSK	8	Unmodified	_LACLRHSK_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2502746582031	2	464.263279	926.512005	-0.55768	-0.00025891	0.33415	0.00015514	-0.22353	-0.00010378	464.26337068332384	48.06	0.35542	47.907	47.702	48.057	-0.15301					21	10	3	0	0	0	0.027866	1	4855	4855		40.573	20.091	1	2080400	+		36883	29184	25240	25293	42558	42558					0.04580970839390375
LACPLTPLLL	10	Unmodified	_LACPLTPLLL_					0	0	0		ENST00000423056.2_1_1:11541363-11541645:+|nuORF	ENST00000423056.2_1_1:11541363-11541645:+|nuORF	ENST00000423056.2_1_1:11541363-11541645:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2868041992188	2	527.322471	1052.63039	-1.1107	-0.00058568	4.2993	0.0022671	3.1887	0.0016815	527.324658658239	32.177	0.70465	32.177	31.789	32.494	0					34	17	3	0	0	0	0.03519	1	2247	2247		30.504	1.3541	1	371330			36884	14019	25241	25294	42559	42559					0.10617905304525266
LACPPPLLL	9	Unmodified	_LACPPPLLL_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.2538146972656	2	468.782982	935.55141	-0.063479	-2.9758E-05	3.719	0.0017434	3.6555	0.0017136	468.78464849510186	49.049	0.64367	48.897	48.646	49.29	-0.15277					34	17	3	0	0	0	0.024475	1	5027	5027		8.8223	0	1	493060	+		36885	28474	25242	25295	42560	42560					0.08105678070251088
LACVARLII	9	Unmodified	_LACVARLII_					0	0	0			REV__nc|ENSG00000166750|Q08AF3-2|SLFN5	REV__nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.30804443359375	2	486.307155	970.599758	0.04447	2.1626E-05	3.5446	0.0017238	3.5891	0.0017454	486.30881767345977	20.637	0.68108	20.469	20.246	20.927	-0.16774					39	13	4	0	0	0	0.4855	1	563	563		60.294	1.512	1	2101200	+		36886	26052	25243	25296	42561	42561					0.11328171710158585
LACYYQLS	8	Unmodified	_LACYYQLS_					0	0	0			REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF	REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2738342285156	2	480.728403	959.442254	-0.68886	-0.00033116	3.4599	0.0016633	2.7711	0.0013321	480.7300825622432	39.156	0.3636	38.933	38.823	39.186	-0.22311					15	9	3	0	0	0	0.027866	1	3318	3318		18.324	0	1	117290	+		36887	23617	25244	25297	42562	42562					-0.0390895261989499
LADAKRIP	8	Unmodified	_LADAKRIP_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78790283203125	2	442.271627	882.528701	0.15466	6.8401E-05	2.1466	0.00094937	2.3012	0.0010178	442.2727250171566	43.035	0.3249	42.896	42.631	42.956	-0.13929					11	8	2	0	0	0	0.027866	1	3950	3950		24.203	14.018	1	149630			36888	4079	25245	25298	42563	42563					0.08273794996978268
LADDLGLGRI	10	Unmodified	_LADDLGLGRI_					0	0	0			REV__ENST00000594017.5_1_19:49497156-49513425:+|nuORF	REV__ENST00000594017.5_1_19:49497156-49513425:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2745361328125	2	521.798206	1041.58186	-0.30304	-0.00015813	-2.8429	-0.0014834	-3.1459	-0.0016415	521.7981713017178	61.635	0.45283	61.422	61.209	61.662	-0.21375					17	10	3	0	0	0	0.03519	1	6893	6893		26.693	3.6504	1	180930	+		36889	27551	25246	25299	42564	42564					0.06273127989015848
LADEALFRH	9	Unmodified	_LADEALFRH_					0	0	0			REV__ENST00000484556.1_1_6:30866836-30867070:+|nuORF	REV__ENST00000484556.1_1_6:30866836-30867070:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.27880859375	2	536.282723	1070.55089	-1.0278	-0.00055122	-2.6148	-0.0014023	-3.6427	-0.0019535	536.2814232541921	24.776	0.44414	24.776	24.608	25.052	0					12	9	2	0	0	0	0.024436	1	1098	1098		23.042	0	1	45766	+		36890	33542	25247	25300	42565	42565					0.01843974674761739
LADFFDSL	8	Unmodified	_LADFFDSL_					0	0	0			REV__ENSG00000112893|ENST00000261483|MAN2A1	REV__ENSG00000112893|ENST00000261483|MAN2A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7642822265625	2	464.226551	926.438549	-0.61675	-0.00028631	1.5437	0.00071661	0.92691	0.0004303	464.22744654447575	33.253	0.56729	33.259	33.005	33.572	0.0066261					24	15	2	0	0	0	0.027866	1	2390	2390		26.796	0	1	88774	+		36891	22030	25248	25301	42566	42566					-0.027612991220848926
LADGVQKV	8	Unmodified	_LADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.2437438964844	2	415.242535	828.470518	0.16436	6.8248E-05	-0.80848	-0.00033571	-0.64412	-0.00026747	415.24209801493305	39.045	0.87441	38.819	38.443	39.317	-0.2257					47	23	3	0	0	0	0.56311	1	3265	3265		79.713	11.228	1	1679500			36892	2184	25249	25302	42567	42567					0.04942113351705757
LADICQCC	8	Unmodified	_LADICQCC_					0	0	0		ENSG00000146707|ENST00000310842|POMZP3	ENSG00000146707|ENST00000310842|POMZP3	ENSG00000146707|ENST00000310842|POMZP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7721862792969	2	434.671717	867.32888	-0.46545	-0.00020232	-2.4441	-0.0010624	-2.9096	-0.0012647	434.6693703819402	25.315	0.3507	25.315	25.135	25.486	0					10	8	2	0	0	0	0.027866	1	1199	1199		24.203	7.4978	1	28140			36893	5903	25250	25303	42568	42568					-0.11009087328943679
LADIEAHYLQT	11	Unmodified	_LADIEAHYLQT_					0	0	0			REV__ENSG00000143643|ENST00000366661|TTC13	REV__ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.7581787109375	3	425.218949	1272.63502	-0.11745	-4.9942E-05	-1.5118	-0.00064283	-1.6292	-0.00069277	425.21842985238476	31.729	0.4005	31.574	31.338	31.739	-0.15546					14	9	2	0	0	0	0.024801	1	2122	2122		12.957	2.3707	1	60787	+		36894	24271	25251	25304	42569	42569					0.00960460980991229
LADIISYLT	9	Unmodified	_LADIISYLT_					0	0	0		nc|ENSG00000185278|Q5TC79-3|ZBTB37;nc|ENSG00000185278|Q5TC79-2|ZBTB37;ENSG00000185278|ENST00000367701|ZBTB37	nc|ENSG00000185278|Q5TC79-3|ZBTB37	nc|ENSG00000185278|Q5TC79-3|ZBTB37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3238525390625	2	504.784233	1007.55391	-0.79254	-0.00040006	1.9783	0.00099864	1.1858	0.00059858	504.7867651750596	39.595	0.46135	39.619	39.313	39.775	0.023727					25	12	3	0	0	0	0.024541	1	3307	3307		3.6843	0	1	156980			36895	9424	25252	25305	42570	42570					0.05043805008892832
LADINEKV	8	Unmodified	_LADINEKV_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2716979980469	2	451.2531	900.491647	-0.070946	-3.2015E-05	0.44862	0.00020244	0.37767	0.00017043	451.253147851575	42.006	0.51193	41.873	41.603	42.115	-0.13219					38	14	4	0	0	0	0.027866	1	3779	3779		58.782	30.528	1	1452200	+		36896	25172	25253	25306	42571	42571					0.03742078660570769
LADINEKV	8	Unmodified	_LADINEKV_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.2531	900.491647	0.51392	0.00023191	0.031285	1.4118E-05	0.54521	0.00024603	451.2528812740057	41.809	0.77677	41.809	41.579	42.355	0	-0.096313	-0.00032243	NaN	58.782	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1460600	+		36897	25172	25253	25306							0.03742078660570769
LADINEKV	8	Unmodified	_LADINEKV_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	451.2531	900.491647	0.052746	2.3802E-05	0.25762	0.00011625	0.31037	0.00014005	451.2530882348241	41.94	0.54584	41.966	41.709	42.255	0.026012	0.060405	-0.00011817	NaN	58.782	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1500300	+		36898	25172	25253	25306							0.03742078660570769
LADINEKV	8	Unmodified	_LADINEKV_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.2531	900.491647	0.15608	7.0432E-05	0.18288	8.2525E-05	0.33896	0.00015296	451.25310546080885	41.995	1.0843	41.872	41.15	42.234	-0.12299	-0.033485	-0.00018562	NaN	58.782	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1785700	+		36899	25172	25253	25306							0.03742078660570769
LADINEKV	8	Unmodified	_LADINEKV_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.2531	900.491647	-0.44617	-0.00020134	0.90463	0.00040822	0.45845	0.00020688	451.2533443361097	42.185	0.576	41.954	41.658	42.234	-0.23186	0.048088	0.00046576	NaN	58.782	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1815500	+		36900	25172	25253	25306							0.03742078660570769
LADINEKV	8	Unmodified	_LADINEKV_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.2531	900.491647	-0.18943	-8.548E-05	0.52234	0.00023571	0.33292	0.00015023	451.25317367748687	42.189	0.63543	41.959	41.58	42.216	-0.2303	0.053418	0.00012075	NaN	58.782	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1562100	+		36901	25172	25253	25306							0.03742078660570769
LADKAAQQGK	10	Unmodified	_LADKAAQQGK_					0	0	0		ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2886352539062	2	515.288005	1028.56146	-0.85235	-0.00043921	0.39852	0.00020535	-0.45383	-0.00023385	515.288242289824	40.259	1.496	40.029	39.623	41.119	-0.23021					72	39	2	0	0	0	0.82838	1	3432	3432		58.782	2.0609	1	18571000			36902	2772	25254	25307	42572	42572					0.04831957329179204
LADKTRRTV	9	Unmodified	_LADKTRRTV_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2972412109375	2	530.317097	1058.61964	0.14743	7.8183E-05	-2.3566	-0.0012497	-2.2092	-0.0011716	530.3158724594915	106.42	0.49131	106.42	106.23	106.72	0					23	15	2	0	0	0	0.024541	1	13642	13642		19.104	9.3979	1	104730			36903	1711	25255	25308	42573	42573					0.09267638974461079
LADLDELLI	9	Unmodified	_LADLDELLI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7923583984375	2	507.789515	1013.56448	-0.14797	-7.5136E-05	2.195	0.0011146	2.047	0.0010394	507.7901383215402	68.148	0.76508	68.148	67.755	68.52	0					60	19	5	0	0	0	0.29104	1	8168	8168		76.847	8.3619	1	1326400			36904	5591	25256	25309	42574	42574					0.05823787663337043
LADLLTHIS	9	Unmodified	_LADLLTHIS_					0	0	0			REV__ENSG00000104689|ENST00000221132|TNFRSF10A	REV__ENSG00000104689|ENST00000221132|TNFRSF10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.26739501953125	2	491.782025	981.549496	-0.52932	-0.00026031	-0.092517	-4.5498E-05	-0.62184	-0.00030581	491.7804012151081	28.732	0.58952	28.728	28.286	28.875	-0.0042019					16	13	2	0	0	0	0.024412	1	1630	1630		31.955	8.9124	1	108800	+		36905	21455	25257	25310	42575	42575					0.05798340585999995
LADNVLGDGG	10	Unmodified	_LADNVLGDGG_					0	0	0		ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7775573730469	2	465.729989	929.445425	-0.58878	-0.00027421	-1.3433	-0.0006256	-1.932	-0.00089981	465.729315233523	81.624	0.56843	81.624	81.341	81.909	0					28	13	3	0	0	0	0.03519	1	10140	10140		19.997	3.5236	1	268710			36906	6643	25258	25311	42576	42576					-0.022119862415024727
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7397766113281	2	436.739825	871.465098	-0.10832	-4.7309E-05	0.45567	0.00019901	0.34735	0.0001517	436.73988593602667	66.852	1.0183	66.852	66.588	67.606	0					54	24	3	0	0	0	0.096521	2	7968	7956;7968		111.65	0	1	2021600	+		36907	23772	25259	25312	42577;42578	42578					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.739990234375	2	436.739825	871.465098	-0.17006	-7.4274E-05	0.61702	0.00026948	0.44696	0.00019521	436.7399428794995	67.18	0.96928	66.898	66.63	67.599	-0.28148					51	23	3	0	0	0	0.039744	2	7986	7975;7986		133.81	0	1	2559600	+		36908	23772	25259	25312	42579;42580	42580					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.7398376464844	2	436.739825	871.465098	0.15459	6.7515E-05	0.1688	7.372E-05	0.32339	0.00014124	436.7397680143019	66.895	0.99195	66.919	66.643	67.635	0.023911					52	23	3	0	0	0	0.039744	3	7904	7880;7890;7904		133.81	0	1	2114800	+		36909	23772	25259	25312	42581;42582;42583	42583					0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	436.739825	871.465098	-0.10832	-4.7309E-05	0.45567	0.00019901	0.34735	0.0001517	436.73988593602667	66.852	1.0183	66.852	66.588	67.606	0	-0.091844	5.0507E-05	NaN	133.81	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2021600	+		36910	23772	25259	25312							0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	436.739825	871.465098	-0.17006	-7.4274E-05	0.61702	0.00026948	0.44696	0.00019521	436.7399428794995	67.18	0.96928	66.898	66.63	67.599	-0.28148	-0.046161	0.00019145	NaN	133.81	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2559600	+		36911	23772	25259	25312							0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	436.739825	871.465098	0.15459	6.7515E-05	0.1688	7.372E-05	0.32339	0.00014124	436.7397680143019	66.895	0.99195	66.919	66.643	67.635	0.023911	-0.025301	-0.00020007	NaN	133.81	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2114800	+		36912	23772	25259	25312							0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	436.739825	871.465098	0.3153	0.0001377	-0.023981	-1.0474E-05	0.29131	0.00012723	436.7396899856242	67.268	0.75236	67.02	66.792	67.545	-0.24839	0.075781	-0.00036846	NaN	133.81	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	887590	+		36913	23772	25259	25312							0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	436.739825	871.465098	-0.31979	-0.00013966	0.78039	0.00034083	0.4606	0.00020116	436.7400305621904	67.222	0.78702	66.998	66.778	67.565	-0.22374	0.053988	0.00033415	NaN	133.81	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	821100	+		36914	23772	25259	25312							0.024223897692309038
LADPASLSV	9	Unmodified	_LADPASLSV_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	436.739825	871.465098	-0.0081812	-3.5731E-06	0.44777	0.00019556	0.43959	0.00019199	436.7398665594993	67.216	0.75359	66.978	66.755	67.508	-0.23814	0.033538	4.3611E-05	NaN	133.81	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1036900	+		36915	23772	25259	25312							0.024223897692309038
LADPCSKET	9	Unmodified	_LADPCSKET_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.8055419921875	2	482.226225	962.437897	0.19101	9.2112E-05	-0.23717	-0.00011437	-0.046153	-2.2256E-05	482.2259084831929	54.072	0.70431	54.072	53.509	54.214	0					28	19	2	0	0	0	0.024344	1	5801	5801		54.776	12.38	1	150250			36916	6684	25260	25313	42584	42584					-0.0448246183344736
LADQAPEW	8	Unmodified	_LADQAPEW_					0	0	0		ENST00000368298.2_1_1:156106728-156106758:+|nuORF	ENST00000368298.2_1_1:156106728-156106758:+|nuORF	ENST00000368298.2_1_1:156106728-156106758:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	465.2218	928.429047	-0.5002	-0.00023271	-3.8239	-0.0017789	-4.3241	-0.0020116	465.2200044661036	33.992	0.96413	33.992	33.626	34.59	0					70	24	4	0	0	0	0.845	1	2480	2480		55.504	2.1528	1	9145400			36917	12885	25261	25314	42585	42585					-0.03803067407625349
LADSLEELEP	10	Unmodified	_LADSLEELEP_					0	0	0		nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	nc|ENSG00000081985|Q99665-3|IL12RB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2598266601562	2	558.276969	1114.53938	0.0042217	2.3569E-06	3.508	0.0019584	3.5122	0.0019608	558.279006600912	79.432	0.25356	79.282	79.067	79.321	-0.15051					7	5	2	0	0	0	0.03519	1	9481	9481		66.429	10.925	1	83274			36918	1721	25262	25315	42586	42586					-0.013303119299052923
LADTQPAVL	9	Unmodified	_LADTQPAVL_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.26116943359375	2	464.260925	926.507297	-0.2665	-0.00012373	0.56233	0.00026107	0.29583	0.00013734	464.2609704984401	60.034	1.0922	59.786	59.417	60.51	-0.24842					63	27	4	0	0	0	0.11092	2	6649	6649;6663		108.09	13.283	1	3212600			36919	4005	25263	25316	42587;42588	42587					0.04110365177609765
LADYIRQQ	8	Unmodified	_LADYIRQQ_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7873229980469	2	503.769448	1005.52434	-0.1026	-5.1687E-05	-2.34	-0.0011788	-2.4426	-0.0012305	503.76885845413136	37.704	0.34164	37.519	37.317	37.659	-0.18491					18	8	3	0	0	0	0.027866	1	3052	3052		38.806	0	1	200410			36920	971	25264	25317	42589	42589					0.021802857834131828
LADYIRQQ	8	Unmodified	_LADYIRQQ_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7869567871094	2	503.769448	1005.52434	-1.0776	-0.00054285	3.7365	0.0018823	2.6589	0.0013395	503.77156108607375	37.636	0.41673	37.416	37.271	37.688	-0.2195					20	10	3	0	0	0	0.027866	1	3039	3039		45.952	16.802	1	284560			36921	971	25264	25317	42590	42590					0.021802857834131828
LAEAQQEL	8	Unmodified	_LAEAQQEL_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.23486328125	2	451.234907	900.455261	-0.17797	-8.0307E-05	-0.04386	-1.9791E-05	-0.22183	-0.0001001	451.23486877090727	28.148	0.91606	28.229	27.91	28.826	0.080812					63	21	4	0	0	0	0.26064	1	1559	1559		128.86	3.0471	1	7082000			36922	8792	25265	25318	42591	42591					0.001052017638471625
LAEAQSQLA	9	Unmodified	_LAEAQSQLA_					0	0	0			REV__ENSG00000167378|ENST00000422989|IRGQ	REV__ENSG00000167378|ENST00000422989|IRGQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.7563781738281	2	465.748182	929.481811	0.22199	0.00010339	4.0806	0.0019005	4.3026	0.0020039	465.75053170299685	29.226	1.312	29.305	28.654	29.966	0.078346					86	32	5	0	0	0	0.29158	1	1757	1757		76.774	1.7308	1	13199000	+		36923	26136	25266	25319	42592	42592					0.014248906551983964
LAEASGGASAP	11	Unmodified	_LAEASGGASAP_					0	0	0			REV__nc|ENSG00000213402|Q14761|PTPRCAP	REV__nc|ENSG00000213402|Q14761|PTPRCAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2676696777344	2	465.729989	929.445425	-0.19022	-8.8593E-05	-1.3211	-0.00061527	-1.5113	-0.00070386	465.7292213101193	81.712	0.52028	81.581	81.38	81.9	-0.13075					24	12	3	0	0	0	0.024336	1	10152	10152		66.429	29.27	1	282930	+		36924	37126	25267	25320	42593	42593					-0.022119862415138414
LAEATHID	8	Unmodified	_LAEATHID_					0	0	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7798767089844	2	435.2218	868.429047	-0.16236	-7.0663E-05	0.85352	0.00037147	0.69116	0.00030081	435.22202169775727	40.075	4.6349	40.098	38.843	43.478	0.023006					282	130	3	0	0	0	0.027866	1	3452	3452		31.955	0	1	1158300	+		36925	24895	25268	25321	42594	42594					-0.01043067407624676
LAECLRAVL	9	Unmodified	_LAECLRAVL_					0	0	0		ENST00000561809.1_1_16:75589903-75590146:-|nuORF	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	ENST00000561809.1_1_16:75589903-75590146:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2854309082031	2	494.28642	986.558287	-0.98477	-0.00048676	0.78627	0.00038864	-0.1985	-9.8116E-05	494.2866758435766	51.329	1.1575	51.416	51.077	52.235	0.087006					94	31	4	0	0	0	0.40179	1	5376	5376		65.803	0	1	4096900			36926	16835	25269	25322	42595	42595					0.0644699095081478
LAECQCVTME	10	Oxidation (M)	_LAECQCVTM(Oxidation (M))E_		LAECQCVTM(1)E		LAECQCVTM(55)E	0	0	1			REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.7282104492188	2	571.72996	1141.44537	0.4047	0.00023138	-3.8027	-0.0021741	-3.398	-0.0019427	571.7277714030618	51.661	1.0013	51.543	51.202	52.203	-0.11876					77	26	4	0	0	0	0.88896	1	5300	5300		54.776	18.33	1	4679300	+		36927	34844	25270	25323	42596	42596		945			-0.11969813619703018
LAEDSNMSV	9	Unmodified	_LAEDSNMSV_					0	0	0		ENSG00000112739|ENST00000337659|PRPF4B;ENST00000490399.5_1_6:4041126-4044298:+|nuORF;ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENSG00000112739|ENST00000337659|PRPF4B;ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENSG00000112739|ENST00000337659|PRPF4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2626037597656	2	483.215857	964.417161	-0.82724	-0.00039973	-3.791	-0.0018319	-4.6183	-0.0022316	483.2139473659056	35.95	0.33463	35.95	35.728	36.063	0					11	8	2	0	0	0	0.024436	1	2777	2777		30.504	3.7075	1	77452			36928	3236;14736	25271	25324	42597	42597					-0.06647052213111238
LAEEAFCDLVY	11	Unmodified	_LAEEAFCDLVY_					0	0	0			REV__ENST00000485979.1_1_3:107937380-107938376:-|nuORF	REV__ENST00000485979.1_1_3:107937380-107938376:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	636.7962646484375	2	636.794472	1271.57439	-0.031938	-2.0338E-05	2.4094	0.0015343	2.3775	0.001514	636.7958855831241	83.804	0.85345	83.666	83.34	84.194	-0.13861					44	19	3	0	0	0	0.782	1	10112	10112		58.782	14.405	1	831550	+		36929	22123	25272	25325	42598	42598					-0.050533923936200154
LAEELASSLS	10	Unmodified	_LAEELASSLS_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.277587890625	2	510.266404	1018.51826	-0.60835	-0.00031042	-0.5419	-0.00027651	-1.1503	-0.00058694	510.7665987896691	35.782	0.26443	35.577	35.387	35.651	-0.20518					10	6	2	0	0	0	0.03519	1	2719	2719		10.265	0	1	141660			36930	4704	25273	25326	42599	42599					0.009737227612504284
LAEEVNLN	8	Unmodified	_LAEEVNLN_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.23480224609375	2	451.234907	900.455261	-0.309	-0.00013943	0.086041	3.8825E-05	-0.22296	-0.00010061	451.23499218274117	28.521	0.8902	28.517	28.157	29.047	-0.0042019					63	20	4	0	0	0	0.2917	1	1652	1652		115.46	3.8107	1	6178400			36931	3453	25274	25327	42600	42600					0.001052017638585312
LAEGAAEPEP	10	Unmodified	_LAEGAAEPEP_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2979736328125	2	492.237647	982.460741	-1.7282	-0.00085069	-1.0515	-0.0005176	-2.7797	-0.0013683	492.2370477363456	60.526	0.40511	60.605	60.392	60.797	0.078888					19	10	2	0	0	0	0.03519	1	6882	6882		49.442	6.9671	1	366850			36932	7616	25275	25328	42601	42601					-0.03119119444329499
LAEGLSLVV	9	Unmodified	_LAEGLSLVV_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.7732849121094	2	450.773668	899.532783	0.096358	4.3436E-05	-0.22171	-9.9941E-05	-0.12535	-5.6505E-05	450.7735505040853	79.09	0.86669	79.109	78.818	79.685	0.018669					47	20	3	0	0	0	0.31247	1	9740	9740		73.975	2.679	1	669250			36933	8086	25276	25329	42602	42602					0.07899839700041866
LAEGPRPHL	9	Unmodified	_LAEGPRPHL_					0	0	0		ENST00000272139.4_1_1:228289171-228290722:-|nuORF;ENST00000472617.5_1_1:228289594-228290722:-|nuORF;ENST00000491293.1_1_1:228289948-228290722:-|nuORF;ENST00000465199.5_1_1:228289759-228291133:-|nuORF	ENST00000272139.4_1_1:228289171-228290722:-|nuORF	ENST00000272139.4_1_1:228289171-228290722:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.751708984375	2	495.279983	988.545414	-0.13994	-6.931E-05	-1.2321	-0.00061021	-1.372	-0.00067952	495.279155802643	45.574	0.51525	45.618	45.377	45.892	0.043877					37	14	3	0	0	0	0.024457	1	4342	4342		45.952	16.11	1	2184200			36934	11648	25277	25330	42603	42603					0.050682958829384006
LAEIDHTID	9	Unmodified	_LAEIDHTID_					0	0	0			REV__ENSG00000101331|ENST00000452892|CCM2L	REV__ENSG00000101331|ENST00000452892|CCM2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3074951171875	2	513.758746	1025.50294	-0.27036	-0.0001389	-2.2798	-0.0011713	-2.5502	-0.0013102	513.7576648923063	53.48	0.31742	53.48	53.337	53.655	0					11	8	2	0	0	0	0.024262	1	5795	5795		23.042	0	1	161200	+		36935	21217	25278	25331	42604	42604					-0.00879144035934587
LAEILRSE	8	Unmodified	_LAEILRSE_					0	0	0		nc|ENSG00000125485|Q9H8H2|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31	nc|ENSG00000125485|Q9H8H2|DDX31	nc|ENSG00000125485|Q9H8H2|DDX31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.7535095214844	2	465.766374	929.518196	0.67672	0.00031519	-0.27549	-0.00012831	0.40123	0.00018688	465.76604124327673	20.758	0.83678	20.562	20.236	21.073	-0.19577					31	16	3	0	0	0	0.027866	1	630	630		40.778	6.6056	1	138310			36936	18244	25279	25332	42605	42605					0.05061767551910634
LAEIVLPSL	9	Unmodified	_LAEIVLPSL_					0	0	0		HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|76|3|anti-sense	HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|76|3|anti-sense	HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|76|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.79736328125	2	477.797143	953.579734	1.1591	0.00055384	-1.1256	-0.0005378	0.033575	1.6042E-05	477.7965293272773	96.337	2.6643	96.339	95.395	98.06	0.0020676					149	61	4	0	0	0	0.43973	1	12244	12244		63.306	0	1	9914000			36937	17710	25280	25333	42606	42606					0.10108699251179587
LAEKEELQRAL	11	Unmodified	_LAEKEELQRAL_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6	REV__ENSG00000197616|ENST00000405093|MYH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.9146423339844	3	433.913748	1298.71942	0.015412	6.6876E-06	0.81908	0.00035541	0.8345	0.0003621	433.9141210862794	41.663	1.4942	41.538	41.187	42.681	-0.12489					104	39	4	0	0	0	0.80896	1	3721	3721		57.149	8.5472	1	7214600	+		36938	28330	25281	25334	42607	42607					0.08200411797770357
LAEKQTPDGRK	11	Unmodified	_LAEKQTPDGRK_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.89849853515625	3	414.89821	1241.6728	0.04343	1.8019E-05	0.18869	7.8288E-05	0.23212	9.6307E-05	414.8983674042411	25.156	1.4178	25.156	24.786	26.203	0					97	33	6	0	0	0	0.95911	1	1141	1141		45.908	3.57	1	11629000			36939	10871	25282	25335	42608	42608					0.061629719664551885
LAEKRGDL	8	Unmodified	_LAEKRGDL_					0	0	0		ENST00000558066.1_1_15:51507246-51510841:-|nuORF;ENSG00000137869|ENST00000396402|CYP19A1	ENST00000558066.1_1_15:51507246-51510841:-|nuORF	ENST00000558066.1_1_15:51507246-51510841:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.235107421875	2	451.258717	900.50288	-0.74621	-0.00033673	1.0297	0.00046465	0.28346	0.00012792	451.2597432301901	28.837	0.66285	28.837	28.449	29.112	0					28	15	3	0	0	0	0.027866	1	1659	1659		116.9	29.149	1	160650			36940	5171	25283	25336	42609	42609					0.048649007547169276
LAELKPGTP	9	Unmodified	_LAELKPGTP_					0	0	0			REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.2696533203125	2	463.271293	924.528032	0.6502	0.00030122	-3.4428	-0.0015949	-2.7926	-0.0012937	463.2694402206933	21.234	0.82261	21.306	20.91	21.732	0.071487					38	16	3	0	0	0	0.83071	1	584	584		37.159	1.5408	1	198640	+		36941	23762	25284	25337	42610	42610					0.06274955557273643
LAELNNKPD	9	Unmodified	_LAELNNKPD_					0	0	0			REV__ENSG00000160349|ENST00000371781|LCN1	REV__ENSG00000160349|ENST00000371781|LCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7886047363281	2	507.266739	1012.51892	-0.28773	-0.00014596	-0.0072109	-3.6578E-06	-0.29494	-0.00014961	507.2665454037073	48.929	0.34883	48.929	48.69	49.039	0					16	9	2	0	0	0	0.024447	1	5037	5037		25.574	0	1	80016	+		36942	25315	25285	25338	42611	42611					0.013165622009523759
LAEMLPGVL	9	Unmodified	_LAEMLPGVL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7904052734375	2	471.770071	941.52559	-0.25954	-0.00012244	4.0316	0.001902	3.772	0.0017795	471.7721501759737	47.756	0.27703	47.815	47.585	47.862	0.059097					10	8	2	0	0	0	0.023528	1	4751	4751		60.294	10.269	1	390500			36943	2570	25286	25339	42612	42612					0.05248783827983061
LAENAEPR	8	Unmodified	_LAENAEPR_					0	0	0			REV__ENSG00000169504|ENST00000374379|CLIC4	REV__ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.23297119140625	2	450.232699	898.450845	0.2377	0.00010702	-0.067338	-3.0318E-05	0.17036	7.6701E-05	450.2325207987104	25.907	1.0489	25.987	25.664	26.713	0.08009					53	24	3	0	0	0	0.32162	1	1213	1213		108.09	6.4868	1	1022300	+		36944	26373	25287	25340	42613	42613					-0.0024426265905503897
LAENERLR	8	Unmodified	_LAENERLR_					0	0	0		ENST00000587407.1_1_18:33422102-33422321:+|nuORF	ENST00000587407.1_1_18:33422102-33422321:+|nuORF	ENST00000587407.1_1_18:33422102-33422321:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7876281738281	2	500.780348	999.546142	-0.052314	-2.6198E-05	-3.0353	-0.00152	-3.0876	-0.0015462	500.7787863408588	73.342	1.1431	73.07	72.395	73.538	-0.27126					50	28	2	0	0	0	0.027866	1	8811	8811		31.955	0	1	857080			36945	17270	25288	25341	42614	42614					0.04635090531996866
LAEPLLVP	8	Unmodified	_LAEPLLVP_					0	0	0			REV__nc|nan|A6NN90|C2orf81	REV__nc|nan|A6NN90|C2orf81	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2639465332031	2	426.265479	850.516405	-0.73075	-0.00031149	-2.4824	-0.0010582	-3.2131	-0.0013696	426.26441211351226	23.754	0.8065	23.754	23.36	24.166	0					53	18	5	0	0	0	1.0133	1	962	962		35.201	1.6851	1	2731500	+		36946	29253	25289	25342	42615	42615					0.08516758533949087
LAEPLMLL	8	Unmodified	_LAEPLMLL_					0	0	0		ENST00000428417.5_1_1:15546673-15546847:+|nuORF	ENST00000428417.5_1_1:15546673-15546847:+|nuORF	ENST00000428417.5_1_1:15546673-15546847:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2684631347656	2	450.267164	898.519776	0.49546	0.00022309	3.1199	0.0014048	3.6153	0.0016279	450.26867525614614	49.095	1.1881	49.095	48.69	49.878	0					121	32	6	0	0	0	0.58212	1	5048	5048		77.944	0	1	11801000			36947	14133	25290	25343	42616	42616					0.06645685316300387
LAEPLVWAP	9	Unmodified	_LAEPLVWAP_					0	0	0			REV__ENST00000528220.1_1_11:65487749-65488268:-|nuORF	REV__ENST00000528220.1_1_11:65487749-65488268:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.7169189453125	2	498.28166	994.548768	-0.22006	-0.00010965	4.1824	0.002084	3.9623	0.0019743	498.2840225795566	36.57	0.40331	36.365	36.203	36.606	-0.20518					11	9	2	0	0	0	0.023775	1	2903	2903		57.811	9.8957	1	82559	+		36948	34491	25291	25344	42617	42617					0.05127545936932165
LAEPTARLI	9	Unmodified	_LAEPTARLI_					0	0	0			REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.29779052734375	2	492.297842	982.581131	-0.40023	-0.00019703	0.38168	0.0001879	-0.018548	-9.1313E-06	492.2979431040793	60.385	1.228	60.385	60.027	61.255	0					104	32	6	0	0	0	0.32811	1	6970	6970		71.877	6.4121	1	7219900	+		36949	32133	25292	25345	42618	42618					0.08914333339953373
LAEPTARLI	9	Unmodified	_LAEPTARLI_					0	0	0			REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2984313964844	2	492.297842	982.581131	-0.57193	-0.00028156	0.53075	0.00026129	-0.041178	-2.0272E-05	492.2979634668604	60.679	1.2712	60.465	60.04	61.311	-0.21339					111	33	6	0	0	0	0.28753	1	6977	6977		77.318	9.8239	1	5328000	+		36950	32133	25292	25345	42619	42619					0.08914333339953373
LAEPTARLI	9	Unmodified	_LAEPTARLI_					0	0	0			REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2979736328125	2	492.297842	982.581131	-1.8945	-0.00093263	1.7632	0.00086801	-0.13127	-6.4625E-05	492.29863111906184	60.344	1.2734	60.423	60.049	61.322	0.078884					99	33	4	0	0	0	0.34489	1	6882	6882		69.628	2.134	1	6758600	+		36951	32133	25292	25345	42620	42620					0.08914333339953373
LAEPVASPVP	10	Unmodified	_LAEPVASPVP_					0	0	0			REV__chr1:1043732-1044109|142|12.25|0.15|6.31|+|0|AGRN,AGRN|1	REV__chr1:1043732-1044109|142|12.25|0.15|6.31|+|0|AGRN,AGRN|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.3005065917969	2	490.276575	978.538597	-0.48329	-0.00023695	1.3185	0.00064642	0.8352	0.00040948	490.27679262815656	66.869	0.67165	66.893	66.559	67.23	0.023903					19	15	2	0	0	0	0.03519	1	7869	7869		65.803	34.273	1	105020	+		36952	19309	25293	25346	42621	42621					0.04846938211710494
LAEQLLFL	8	Unmodified	_LAEQLLFL_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7857666015625	2	473.784036	945.553519	0.59503	0.00028191	3.0344	0.0014376	3.6294	0.0017196	473.7853886230998	93.051	1.5791	93.051	92.665	94.244	0					92	37	4	0	0	0	0.26064	2	11824	11790;11824		128.86	0.33563	1	3366600	+		36953	22309	25294	25347	42622;42623	42623					0.07856430079709753
LAEQQAEL	8	Unmodified	_LAEQQAEL_					0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.235107421875	2	451.234907	900.455261	-0.64095	-0.00028922	0.53311	0.00024056	-0.10785	-4.8664E-05	451.23523254940574	28.55	0.92184	28.55	28.151	29.073	0					63	21	4	0	0	0	0.20995	1	1659	1659		138.83	9.9644	1	6722300	+		36954	28449	25295	25348	42624	42624					0.001052017638471625
LAEQQAEL	8	Unmodified	_LAEQQAEL_					0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2351379394531	2	451.234907	900.455261	-0.309	-0.00013943	0.086041	3.8825E-05	-0.22296	-0.00010061	451.23499218274117	28.521	0.8902	28.517	28.157	29.047	-0.0042019					63	20	4	0	0	0	0.15467	1	1642	1642		148.04	9.8007	1	6178400	+		36955	28449	25295	25348	42625	42625					0.001052017638471625
LAEQQAEL	8	Unmodified	_LAEQQAEL_					0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2347412109375	2	451.234907	900.455261	-0.17797	-8.0307E-05	-0.04386	-1.9791E-05	-0.22183	-0.0001001	451.23486877090727	28.148	0.91606	28.229	27.91	28.826	0.080812					63	21	4	0	0	0	0.23402	1	1571	1571		134.81	5.9496	1	7082000	+		36956	28449	25295	25348	42626	42626					0.001052017638471625
LAEQVDPPV	9	Unmodified	_LAEQVDPPV_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.25872802734375	2	484.258382	966.502212	-0.62246	-0.00030143	-0.603	-0.00029201	-1.2255	-0.00059344	484.2579896725806	28.191	1.0713	27.946	27.506	28.578	-0.24524					73	25	4	0	0	0	0.4752	1	1644	1644		60.972	5.4677	1	1459200			36957	3192	25296	25349	42627	42627					0.017620613150029385
LAERVTPDP	9	Unmodified	_LAERVTPDP_					0	0	0			REV__ENSG00000198960|ENST00000361910|ARMCX6	REV__ENSG00000198960|ENST00000361910|ARMCX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.32421875	2	499.269281	996.52401	-0.17884	-8.929E-05	-0.40618	-0.0002028	-0.58502	-0.00029208	499.2692438199024	63.187	0.8548	63.187	62.811	63.666	0					48	22	3	0	0	0	0.023417	1	7452	7452		90.777	19.481	1	1727100	+		36958	28530	25297	25350	42628	42628					0.025608660635725755
LAESKKKP	8	Unmodified	_LAESKKKP_					0	0	0			REV__AADAC|p.R98K|1|0.5|ENSG00000114771|chr3:151817520-151817520|G/A|missense_variant	REV__AADAC|p.R98K|1|0.5|ENSG00000114771|chr3:151817520-151817520|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.23297119140625	2	450.779285	899.544017	0.29595	0.00013341	-0.094551	-4.2621E-05	0.2014	9.0785E-05	450.77895875757275	25.736	0.83155	25.816	25.581	26.412	0.08009					37	19	3	0	0	0	0.027866	1	1213	1213		45.952	0	1	492840	+		36959	19041	25298	25351	42629	42629					0.09022661794188025
LAESTKSEI	9	Unmodified	_LAESTKSEI_					0	0	0			REV__nc|ENSG00000123191|P35670-2|ATP7B	REV__nc|ENSG00000123191|P35670-2|ATP7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.26458740234375	2	489.261122	976.507691	2.2188	0.0010855	2.5917	0.001268	4.8105	0.0023536	489.2622809380533	18.458	1.6018	18.458	18.087	19.689	0					63	32	3	0	0	0	0.85329	1	307	307		35.618	2.8059	1	148330	+		36960	36626	25299	25352	42630	42630					0.01849740106831632
LAEVGRALAL	10	Unmodified	_LAEVGRALAL_					0	0	0			REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.81121826171875	2	506.811116	1011.60768	-0.76083	-0.0003856	-0.20864	-0.00010574	-0.96948	-0.00049134	506.8111194725813	54.608	1.2505	54.608	54.214	55.464	0					119	35	5	0	0	0	0.55353	1	5995	5995		82.241	2.7895	1	40876000	+		36961	34177	25300	25353	42631	42631					0.10234022231270501
LAEVGRALAL	10	Unmodified	_LAEVGRALAL_					0	0	0			REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8110656738281	2	506.811116	1011.60768	0.53467	0.00027098	-1.3459	-0.00068214	-0.81128	-0.00041116	506.81053479143134	54.415	1.2551	54.513	54.077	55.332	0.098011					114	35	5	0	0	0	0.74632	1	5867	5867		64.207	3.9133	1	38735000	+		36962	34177	25300	25353	42632	42632					0.10234022231270501
LAEVQHLL	8	Unmodified	_LAEVQHLL_					0	0	0			REV__ENSG00000173540|ENST00000308388|GMPPB	REV__ENSG00000173540|ENST00000308388|GMPPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.772216796875	2	461.77146	921.528367	0.37183	0.0001717	1.8717	0.00086429	2.2435	0.001036	461.7720283962125	98.317	1.1137	98.327	98.021	99.135	0.010239					49	25	3	0	0	0	0.81662	1	12528	12528		57.811	0	1	743680	+		36963	26782	25301	25354	42633	42633					0.06446375277153038
LAEYQARID	9	Unmodified	_LAEYQARID_					0	0	0			REV__CON__P05784	REV__CON__P05784	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7984619140625	2	539.780013	1077.54547	0.34898	0.00018837	0.65414	0.00035309	1.0031	0.00054146	539.7809004514678	70.77	0.26036	70.477	70.368	70.629	-0.29291					7	5	2	0	0	0	0.024495	1	8527	8527		34.173	6.2903	1	212860	+	+	36964	19544	25302	25355	42634	42634					0.009802510922781948
LAFACNPNT	9	Carbamidomethyl (C)	_LAFAC(Carbamidomethyl (C))NPNT_	LAFAC(1)NPNT		LAFAC(63)NPNT		0	1	0		AluSz_dup93694|chr19:16102069-16102357:+|7.557964954863795|0.1659909287906949|5.51|522.0|10|3|sense	AluSz_dup93694|chr19:16102069-16102357:+|7.557964954863795|0.1659909287906949|5.51|522.0|10|3|sense	AluSz_dup93694|chr19:16102069-16102357:+|7.557964954863795|0.1659909287906949|5.51|522.0|10|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2321472167969	2	504.234384	1006.45422	-0.79687	-0.00040181	-3.2346	-0.001631	-4.0314	-0.0020328	504.2326230937057	44.78	0.73672	44.528	44.282	45.019	-0.25252					42	18	3	0	0	0	0.43973	1	4182	4182		63.306	9.9548	1	1595300			36965	79	25303	25356	42635	42635	0				-0.04875335876693043
LAFAFIIE	8	Unmodified	_LAFAFIIE_					0	0	0		nc|ENSG00000111291|Q9NZD1-2|GPRC5D;nc|ENSG00000111291|Q9NZD1-3|GPRC5D;ENSG00000111291|ENST00000228887|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2818298339844	2	462.265479	922.516405	-0.32894	-0.00015206	-3.0148	-0.0013936	-3.3438	-0.0015457	462.26428471722204	75.575	0.29	75.33	75.153	75.443	-0.24455					10	7	2	0	0	0	0.027866	1	9247	9247		23.037	1.3344	1	99815			36966	3102	25304	25357	42636	42636					0.05204758533943732
LAFALTSDN	9	Unmodified	_LAFALTSDN_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.28961181640625	2	476.242732	950.470912	1.6044	0.00076409	1.7365	0.00082699	3.3409	0.0015911	476.24283847390967	58.948	0.13929	58.948	58.895	59.035	0					5	3	2	0	0	0	0.024541	1	6705	6705		23.042	0	1	85750			36967	7090	25305	25358	42637	42637					-0.006305117191004683
LAFFASHYI	9	Unmodified	_LAFFASHYI_					0	0	0		ENST00000265990.10_1_10:93726429-93740242:+|nuORF	ENST00000265990.10_1_10:93726429-93740242:+|nuORF	ENST00000265990.10_1_10:93726429-93740242:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.7772827148438	2	534.779285	1067.54402	-0.61836	-0.00033069	-4.3757	-0.00234	-4.994	-0.0026707	534.7771041603027	46.351	1.4465	46.403	46.131	47.577	0.051395					103	40	3	0	0	0	0.20304	1	4541	4541		88.643	8.7036	1	44502000			36968	11604	25306	25359	42638	42638					0.01294661794190688
LAFFFLLV	8	Unmodified	_LAFFFLLV_					0	0	0		ENST00000468741.5_1_3:179691947-179692037:-|nuORF	ENST00000468741.5_1_3:179691947-179692037:-|nuORF	ENST00000468741.5_1_3:179691947-179692037:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7768249511719	2	485.29404	968.573526	-0.60071	-0.00029152	3.5795	0.0017371	2.9788	0.0014456	485.2955578649015	30.485	0.70441	30.494	30.042	30.746	0.0086708					27	16	2	0	0	0	0.027866	1	1886	1886		10.185	0	1	187000			36969	14883	25307	25360	42639	42639					0.08798225810335225
LAFFGFLAN	9	Unmodified	_LAFFGFLAN_					0	0	0		ENSG00000169903|ENST00000305354|TM4SF4	ENSG00000169903|ENST00000305354|TM4SF4	ENSG00000169903|ENST00000305354|TM4SF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3052062988281	2	500.268553	998.522553	-0.62075	-0.00031054	-3.3038	-0.0016528	-3.9246	-0.0019633	500.2665256271566	60.376	0.59752	60.2	59.885	60.483	-0.1761					28	14	3	0	0	0	0.024466	1	6674	6674		25.45	1.2474	1	473770			36970	7988	25308	25361	42640	42640					0.023232767654803865
LAFFGTASR	9	Unmodified	_LAFFGTASR_					0	0	0			REV__ENST00000372805.7_2_1:40537197-40537323:+|nuORF	REV__ENST00000372805.7_2_1:40537197-40537323:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7770690917969	2	485.261259	968.507966	-0.64252	-0.00031179	-2.486	-0.0012064	-3.1285	-0.0015181	485.25979274583773	29.448	1.3231	29.452	28.713	30.036	0.0031376					75	32	3	0	0	0	0.024412	1	1861	1861		40.573	17.05	1	814410	+		36971	31216	25309	25362	42641	42641					0.022452046173384588
LAFFTLPG	8	Unmodified	_LAFFTLPG_					0	0	0			REV__ENST00000409161.5_1_11:70508092-70508251:-|nuORF	REV__ENST00000409161.5_1_11:70508092-70508251:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.25738525390625	2	433.244547	864.47454	0.064523	2.7954E-05	-0.36838	-0.0001596	-0.30385	-0.00013164	433.24421560720185	102.53	0.30745	102.54	102.28	102.59	0.0073471					9	6	2	0	0	0	0.027866	1	13102	13102		54.765	0	1	87669	+		36972	31950	25310	25363	42642	42642					0.036882028454328974
LAFHCTAL	8	Unmodified	_LAFHCTAL_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.2235107421875	2	438.225831	874.437109	-0.362	-0.00015864	-4.0843	-0.0017899	-4.4463	-0.0019485	438.22392149299884	25.842	0.76107	25.842	25.363	26.124	0					39	17	3	0	0	0	0.78474	1	1275	1275		60.404	2.951	1	535800	+		36973	21453	25311	25364	42643	42643					-0.005132116918616703
LAFHCTAL	8	Unmodified	_LAFHCTAL_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	438.225831	874.437109	0.50491	0.00022127	-4.5145	-0.0019784	-4.0095	-0.0017571	438.22356371082805	25.597	0.91488	25.677	25.254	26.169	0.08009	-0.10693	-0.00030418	NaN	60.404	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649070	+		36974	21453	25311	25364							-0.005132116918616703
LAFHMLLAH	9	Unmodified	_LAFHMLLAH_					0	0	0		ENST00000367139.7_1_1:205739248-205739320:-|nuORF	ENST00000367139.7_1_1:205739248-205739320:-|nuORF	ENST00000367139.7_1_1:205739248-205739320:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.355224609375	2	526.78913	1051.56371	-1.1635	-0.00061291	4.1483	0.0021853	2.9848	0.0015724	526.7908421086968	50.324	0.82655	50.324	49.913	50.74	0					38	24	2	0	0	0	0.024475	1	5255	5255		39.021	9.18	1	305630			36975	12842	25312	25365	42644	42644					0.039987145333270746
LAFIMGLVPI	10	Unmodified	_LAFIMGLVPI_					0	0	0			REV__nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	REV__nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3270874023438	2	537.325014	1072.63547	0.99052	0.00053223	-2.5611	-0.0013762	-1.5706	-0.00084393	537.3221926993008	82.808	1.6688	82.698	82.168	83.837	-0.11006					148	38	6	0	0	0	1.0111	1	10302	10302		44.531	5.2782	1	1716700	+		36976	37107	25313	25366	42645	42645					0.10206209167154157
LAFKIESH	8	Unmodified	_LAFKIESH_					0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.76416015625	2	472.763635	943.512717	0.64078	0.00030294	1.0249	0.00048455	1.6657	0.00078749	472.7638186789031	102.02	0.52725	102.02	101.8	102.33	-0.0054474					25	11	3	0	0	0	0.50239	2	12985	12985;13009		85.359	27.548	1	327920	+		36977	26176	25314	25367	42646;42647	42646					0.03870088760095314
LAFLAAVAAVL	11	Unmodified	_LAFLAAVAAVL_					0	0	0		ENSG00000214376|ENST00000409977|VSTM5	ENSG00000214376|ENST00000409977|VSTM5	ENSG00000214376|ENST00000409977|VSTM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.814697265625	2	529.83406	1057.65357	-0.74364	-0.000394	2.0742	0.001099	1.3305	0.00070496	529.8338034735473	26.698	0.17073	26.78	26.629	26.799	0.081293					5	3	2	0	0	0	0.024733	1	1325	1325		11.511	0	1	31892			36978	10553	25315	25368	42648	42648					0.12704667413504467
LAFLFLQA	8	Unmodified	_LAFLFLQA_					0	0	0			REV__ENSG00000170605|ENST00000641329|OR9K2	REV__ENSG00000170605|ENST00000641329|OR9K2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7719421386719	2	461.773471	921.53239	0.16911	7.8089E-05	-2.2625	-0.0010447	-2.0934	-0.00096666	461.7720766093848	98.419	0.93749	98.419	98.063	99.001	0					47	21	3	0	0	0	0.82104	2	12600	12551;12600		57.453	1.9484	1	819260	+		36979	26488	25316	25369	42649;42650	42650					0.06848464770837381
LAFLKKIK	8	Unmodified	_LAFLKKIK_					0	0	0			REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.7769470214844	2	480.833863	959.653173	0.13411	6.4487E-05	-0.59777	-0.00028743	-0.46365	-0.00022294	480.8332632378512	27.904	0.46579	27.659	27.376	27.842	-0.24524					16	10	2	0	0	0	0.027866	1	1553	1553		20.482	5.8177	1	51654	+		36980	30233	25317	25370	42651	42651					0.17173292484324065
LAFLKKIK	8	Unmodified	_LAFLKKIK_					0	0	0			REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.7771301269531	2	480.833863	959.653173	-0.91242	-0.00043872	0.078021	3.7515E-05	-0.8344	-0.00040121	480.8338390634381	27.693	0.40906	27.524	27.359	27.768	-0.16816					13	9	2	0	0	0	0.027866	1	1539	1539		26.796	1.3459	1	65352	+		36981	30233	25317	25370	42652	42652					0.17173292484324065
LAFLKKIK	8	Unmodified	_LAFLKKIK_					0	0	0			REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	REV__ENST00000313478.11_1_15:50884110-50884182:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.7773742675781	2	480.833863	959.653173	-0.076651	-3.6856E-05	-0.34815	-0.0001674	-0.42481	-0.00020426	480.83347426804386	27.929	0.23506	27.777	27.649	27.885	-0.15195					8	5	2	0	0	0	0.027866	1	1548	1548		13.775	0	1	69151	+		36982	30233	25317	25370	42653	42653					0.17173292484324065
LAFLKRPE	8	Unmodified	_LAFLKRPE_					0	0	0		nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;ENST00000381161.5_1_X:2748138-2799251:+|nuORF	nc|ENSG00000056998|O15488-5|GYG2	nc|ENSG00000056998|O15488-5|GYG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2631530761719	2	487.295102	972.575651	-0.75236	-0.00036662	1.9832	0.0009664	1.2308	0.00059978	487.2962880028797	66.684	0.2532	66.714	66.565	66.818	0.030106					7	5	2	0	0	0	0.027866	1	7848	7848		40.573	0	1	185700			36983	1200	25318	25371	42654	42654					0.0882665454812468
LAFLQIGPR	9	Unmodified	_LAFLQIGPR_					0	0	0		ENST00000585560.5_1_19:44670865-44674197:+|nuORF;ENST00000590467.5_1_19:44670865-44674197:+|nuORF	ENST00000585560.5_1_19:44670865-44674197:+|nuORF	ENST00000585560.5_1_19:44670865-44674197:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.80682373046875	2	507.808377	1013.6022	0.09691	4.9212E-05	-4.1479	-0.0021064	-4.051	-0.0020571	507.8060923163073	20.587	0.63474	20.419	20.197	20.832	-0.16774					19	12	2	0	0	0	0.83071	1	577	577		37.159	0.71236	1	355040			36984	17229	25319	25372	42655	42655					0.09594343439471231
LAFLRRQP	8	Unmodified	_LAFLRRQP_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2896728515625	2	500.806168	999.597784	-0.85065	-0.00042601	-1.3083	-0.0006552	-2.1589	-0.0010812	500.805512563896	55.519	1.0831	55.617	54.916	55.999	0.098015					68	29	4	0	0	0	0.027866	1	6060	6060		35.201	0	1	1967500			36985	10517	25320	25373	42656	42656					0.09796879016550974
LAFLRRQP	8	Unmodified	_LAFLRRQP_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7845458984375	2	500.806168	999.597784	-0.79537	-0.00039833	-1.5839	-0.00079325	-2.3793	-0.0011916	501.3044543103628	72.593	0.50484	72.395	72.12	72.625	-0.19811					22	11	3	0	0	0	0.027866	1	8466	8466		44.531	10.359	1	160080			36986	10517	25320	25373	42657	42657					0.09796879016550974
LAFLSALLE	9	Unmodified	_LAFLSALLE_					0	0	0		KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7892150878906	2	488.789318	975.564084	0.32519	0.00015895	-0.50975	-0.00024916	-0.18456	-9.0211E-05	488.7889567870726	100.57	0.45241	100.4	100.18	100.63	-0.17088					21	11	3	0	0	0	0.4752	1	12453	12453		60.972	0	1	352220			36987	17808	25321	25374	42658	42658					0.07532412734133231
LAFNQAKRL	9	Unmodified	_LAFNQAKRL_					0	0	0		ENST00000221859.8_1_19:36605992-36606106:-|nuORF	ENST00000221859.8_1_19:36605992-36606106:-|nuORF	ENST00000221859.8_1_19:36605992-36606106:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7733154296875	2	530.816733	1059.61891	-0.83834	-0.000445	0.20035	0.00010635	-0.63799	-0.00033866	530.816801009455	82.67	0.34357	82.67	82.449	82.793	0					11	7	2	0	0	0	0.024517	1	10338	10338		26.796	0	1	93572			36988	11185	25322	25375	42659	42659					0.091488443254093
LAFPPRLVV	9	Unmodified	_LAFPPRLVV_					0	0	0		ENST00000318709.8_1_7:32627221-32627503:+|nuORF	ENST00000318709.8_1_7:32627221-32627503:+|nuORF	ENST00000318709.8_1_7:32627221-32627503:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3189392089844	2	506.32112	1010.62769	-0.49543	-0.00025085	-4.0729	-0.0020622	-4.5683	-0.002313	506.3190492521723	53.076	1.0665	52.929	52.645	53.711	-0.14723					82	28	4	0	0	0	0.64155	1	5707	5707		50.025	2.1089	1	10306000			36989	12175	25323	25376	42660	42660					0.12279817961905337
LAFPSLVL	8	Unmodified	_LAFPSLVL_					0	0	0			REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	REV__MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.2659912109375	2	430.268022	858.521491	-0.3972	-0.0001709	-4.4259	-0.0019043	-4.8231	-0.0020752	430.2660252193829	20.697	1.201	20.592	20.375	21.576	-0.10477					51	24	4	0	0	0	0.37803	1	567	567		100.27	4.0823	1	1308400	+		36990	21741	25324	25377	42661	42661					0.08657062396559922
LAFPVYLL	8	Unmodified	_LAFPVYLL_					0	0	0		MYO1F|p.A307V|1|0.24|ENSG00000142347|chr19:8550341-8550341|G/A|missense_variant	MYO1F|p.A307V|1|0.24|ENSG00000142347|chr19:8550341-8550341|G/A|missense_variant	MYO1F|p.A307V|1|0.24|ENSG00000142347|chr19:8550341-8550341|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.305908203125	2	468.283672	934.552791	-0.10979	-5.1414E-05	-1.325	-0.00062048	-1.4348	-0.00067189	468.28134861804364	62.149	0.21153	61.922	61.803	62.015	-0.22663					8	5	2	0	0	0	0.027866	1	7172	7172		54.895	0	1	86034			36991	18014	25325	25378	42662	42662					0.08289635430662656
LAFRRALD	8	Unmodified	_LAFRRALD_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7532958984375	2	481.282526	960.550499	-0.23953	-0.00011528	-2.2799	-0.0010973	-2.5194	-0.0012125	481.28137580271266	47.896	0.75655	47.743	47.3	48.057	-0.15301					32	22	2	0	0	0	0.027866	1	4870	4870		20.482	0	1	344320	+		36992	20348	25326	25379	42663	42663					0.06864599745563282
LAFSSHLHG	9	Unmodified	_LAFSSHLHG_					0	0	0		ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59482609-59483362:+|nuORF	ENSG00000121068|ENST00000240328|TBX2	ENSG00000121068|ENST00000240328|TBX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2701416015625	2	484.751059	967.487565	-0.65454	-0.00031729	1.2596	0.00061057	0.60502	0.00029328	484.7509338307043	31.622	0.5288	31.622	31.3	31.829	0					17	12	2	0	0	0	0.024443	1	2087	2087		26.796	4.8362	1	43544			36993	3854	25327	25380	42664	42664					0.0025203395751987046
LAFVILLLA	9	Unmodified	_LAFVILLLA_					0	0	0		nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12	nc|ENSG00000253159|O60330-2|PCDHGA12	nc|ENSG00000253159|O60330-2|PCDHGA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.8138427734375	2	486.828246	971.64194	-0.95596	-0.00046539	1.1825	0.00057567	0.22653	0.00011028	486.828234082093	21.552	0.3873	21.339	21.216	21.604	-0.2128					10	7	2	0	0	0	0.024475	1	646	646		29.842	0	1	24547			36994	10857	25328	25381	42665	42665					0.15498470390195962
LAFVITVRR	9	Unmodified	_LAFVITVRR_					0	0	0			REV__ENST00000607092.1_1_7:101459310-101559544:+|nuORF	REV__ENST00000607092.1_1_7:101459310-101559544:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7803955078125	2	537.842751	1073.67095	-1.5408	-0.00082869	0.24099	0.00012962	-1.2998	-0.00069907	537.8427749333579	35.469	0.39769	35.447	35.271	35.669	-0.021763					13	9	2	0	0	0	0.024495	1	2707	2707		34.173	15.848	1	83958	+		36995	35944	25329	25382	42666	42666					0.13706007739165216
LAFVLLIVPT	10	Unmodified	_LAFVLLIVPT_					0	0	0			REV__ENST00000552099.5_1_12:49165333-49167571:-|nuORF	REV__ENST00000552099.5_1_12:49165333-49167571:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.27978515625	2	543.352086	1084.68962	-1.068	-0.00058032	-0.3991	-0.00021685	-1.4671	-0.00079717	543.3517009963862	61.924	0.11324	61.747	61.691	61.804	-0.17781					4	2	2	0	0	0	0.03519	1	6946	6946		29.15	8.2026	1	78222	+		36996	26846	25330	25383	42667	42667					0.15066124590384788
LAFWKTDA	8	Unmodified	_LAFWKTDA_					0	0	0		CON__P17690;ENSG00000091583|ENST00000205948|APOH	CON__P17690	CON__P17690	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2606201171875	2	476.25036	950.486168	-0.55291	-0.00026332	-2.8358	-0.0013505	-3.3887	-0.0016139	476.2489580650217	40.089	0.9609	40.112	39.634	40.595	0.023006					64	26	3	0	0	0	0.027866	1	3512	3512		30.504	6.3009	1	672170		+	36997	522	25331	25384	42668	42668					0.008943998687414023
LAFYIPGLF	9	Unmodified	_LAFYIPGLF_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.750732421875	2	520.794404	1039.57425	-0.17733	-9.2353E-05	2.8878	0.0015039	2.7104	0.0014116	520.7954632364191	42.05	0.69239	41.818	41.62	42.312	-0.23186					37	18	3	0	0	0	0.024389	1	3774	3774		29.842	5.6388	1	181420			36998	8563	25332	25385	42669	42669					0.0560502045937028
LAFYTIKL	8	Unmodified	_LAFYTIKL_					0	0	0			REV__ENSG00000135392|ENST00000678005|DNAJC14	REV__ENSG00000135392|ENST00000678005|DNAJC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7928161621094	2	484.794404	967.574254	-0.83598	-0.00040528	-3.2727	-0.0015866	-4.1087	-0.0019919	484.7926230088773	83.584	0.81854	83.584	83.266	84.084	0					41	18	3	0	0	0	0.15369	2	10444	10444;10455		148.21	16.565	1	1691500	+		36999	23539	25333	25386	42670;42671	42670					0.08917020459364267
LAFYTIKL	8	Unmodified	_LAFYTIKL_					0	0	0			REV__ENSG00000135392|ENST00000678005|DNAJC14	REV__ENSG00000135392|ENST00000678005|DNAJC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.79254150390625	2	484.794404	967.574254	-0.45369	-0.00021995	-3.7026	-0.001795	-4.1563	-0.0020149	484.79247260785	83.649	0.85901	83.558	83.215	84.074	-0.090454					40	19	3	0	0	0	0.21344	1	10441	10441		138.24	21.339	1	1644800	+		37000	23539	25333	25386	42672	42672					0.08917020459364267
LAFYTIKL	8	Unmodified	_LAFYTIKL_					0	0	0			REV__ENSG00000135392|ENST00000678005|DNAJC14	REV__ENSG00000135392|ENST00000678005|DNAJC14	MSMS	OPSCC_39_ClassI_Rep-3	3	484.79217529296875	2	484.794404	967.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.622	1	83.649	83.149	84.149	0.026558								0	0	0	0.342	1	10381	10381		106.42	4.8145	1		+		37001	23539	25333	25386	42673	42673					0.08917020459364267
LAGAAANQVKD	11	Unmodified	_LAGAAANQVKD_					0	0	0			REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2887573242188	2	529.285463	1056.55637	0.040642	2.1511E-05	3.6746	0.0019449	3.7152	0.0019664	529.2872345677699	57.633	0.7239	57.458	56.999	57.723	-0.1749					43	13	5	0	0	0	0.72712	1	6467	6467		62.107	10.772	1	2836300	+		37002	24067	25334	25387	42674	42674					0.030356534665770596
LAGAAEPSR	9	Unmodified	_LAGAAEPSR_					0	0	0			REV__ENST00000479237.5_1_9:131773211-131773688:-|nuORF	REV__ENST00000479237.5_1_9:131773211-131773688:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.2474670410156	2	436.235242	870.45593	-0.42012	-0.00018327	-1.5631	-0.0006819	-1.9833	-0.00086517	436.2342840677376	35.335	0.47496	35.335	35.056	35.531	0					23	12	3	0	0	0	0.024	1	2705	2705		55.504	0	1	95009	+		37003	33393	25335	25388	42675	42675					0.015520412035698428
LAGAEEVLEA	10	Unmodified	_LAGAEEVLEA_					0	0	0		DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant;ENSG00000145214|ENST00000273814|DGKQ	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.80596923828125	2	501.261122	1000.50769	0.10757	5.392E-05	0.11934	5.982E-05	0.22691	0.00011374	501.2610066104517	59.531	0.81498	59.617	59.241	60.056	0.085682					40	21	3	0	0	0	0.03519	1	6748	6748		45.952	23.992	1	703030			37004	636	25336	25389	42676	42676					0.007457401068108993
LAGAGQQLV	9	Unmodified	_LAGAGQQLV_					0	0	0			REV__ENSG00000188818|ENST00000283441|ZDHHC11	REV__ENSG00000188818|ENST00000283441|ZDHHC11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.7846984863281	2	428.747985	855.481417	-0.29481	-0.0001264	4.2937	0.0018409	3.9989	0.0017145	428.75040977413255	26.228	0.18213	25.992	25.948	26.13	-0.23603					8	5	2	0	0	0	0.024497	1	1355	1355		28.254	7.7724	1	241480	+		37005	28069	25337	25390	42677	42677					0.04789515725997262
LAGALCYLS	9	Carbamidomethyl (C)	_LAGALC(Carbamidomethyl (C))YLS_	LAGALC(1)YLS		LAGALC(96)YLS		0	1	0		ENST00000262293.8_2_17:57232974-57233091:+|nuORF	ENST00000262293.8_2_17:57232974-57233091:+|nuORF	ENST00000262293.8_2_17:57232974-57233091:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.25909423828125	2	484.249503	966.484453	-0.64375	-0.00031174	-3.9067	-0.0018918	-4.5505	-0.0022036	484.2463583795066	28.186	0.52183	27.941	27.759	28.281	-0.24524					26	12	3	0	0	0	0.020939	1	1632	1632		96.048	8.2934	1	249070			37006	11494	25338	25391	42678	42678	159				-0.00012977211497400276
LAGALCYLS	9	Carbamidomethyl (C)	_LAGALC(Carbamidomethyl (C))YLS_					0	1	0		ENST00000262293.8_2_17:57232974-57233091:+|nuORF	ENST00000262293.8_2_17:57232974-57233091:+|nuORF	ENST00000262293.8_2_17:57232974-57233091:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.249503	966.484453	-0.78378	-0.00037954	-4.4904	-0.0021745	-5.2742	-0.002554	484.2468478551993	28.014	0.48066	27.846	27.609	28.09	-0.16854	-0.059724	0.0004962	NaN	96.048	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154410			37007	11494	25338	25391			159				-0.00012977211497400276
LAGALCYLS	9	Carbamidomethyl (C)	_LAGALC(Carbamidomethyl (C))YLS_					0	1	0		ENST00000262293.8_2_17:57232974-57233091:+|nuORF	ENST00000262293.8_2_17:57232974-57233091:+|nuORF	ENST00000262293.8_2_17:57232974-57233091:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.249503	966.484453	-0.13635	-6.6028E-05	-6.3102	-0.0030557	-6.4466	-0.0031218	484.2461409540992	28.082	0.4335	27.93	27.729	28.162	-0.15195	0.024421	-0.0012663	NaN	96.048	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126780			37008	11494	25338	25391			159				-0.00012977211497400276
LAGALGLEGPV	11	Unmodified	_LAGALGLEGPV_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7716979980469	2	498.78985	995.565146	-0.38963	-0.00019434	3.2537	0.0016229	2.8641	0.0014286	498.7903621372638	31.229	0.57433	31.044	30.865	31.44	-0.18503					20	14	2	0	0	0	0.024749	1	2034	2034		23.042	1.0826	1	184370	+		37009	27278	25339	25392	42679	42679					0.06718627103055042
LAGALRVAPV	10	Unmodified	_LAGALRVAPV_					0	0	0			REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.301025390625	2	483.808377	965.6022	0.18394	8.8991E-05	-0.10412	-5.0373E-05	0.079821	3.8618E-05	483.8083198517904	54.477	0.51726	54.575	54.328	54.845	0.098015					28	14	3	0	0	0	0.03519	1	5930	5930		29.15	7.1897	1	807560	+		37010	31673	25340	25393	42680	42680					0.11802343439455854
LAGALRVAPV	10	Unmodified	_LAGALRVAPV_					0	0	0			REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.808377	965.6022	-0.52323	-0.00025314	0.45252	0.00021893	-0.07071	-3.421E-05	483.8085695075582	54.665	0.44096	54.665	54.428	54.869	0	0.043685	0.00019228	NaN	29.15	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	696700	+		37011	31673	25340	25393							0.11802343439455854
LAGALRVAPV	10	Unmodified	_LAGALRVAPV_					0	0	0			REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.808377	965.6022	-0.14257	-6.8978E-05	0.2802	0.00013556	0.13763	6.6585E-05	483.8084422383168	54.774	0.65815	54.624	54.375	55.033	-0.15036	0.002415	2.5535E-05	NaN	29.15	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	769840	+		37012	31673	25340	25393							0.11802343439455854
LAGCGVRWAR	10	Unmodified	_LAGCGVRWAR_					0	0	0		ENST00000415992.5_1_9:139702603-139703092:+|nuORF	ENST00000415992.5_1_9:139702603-139703092:+|nuORF	ENST00000415992.5_1_9:139702603-139703092:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8353881835938	2	544.792735	1087.57092	-1.2368	-0.00067378	-0.93943	-0.0005118	-2.1762	-0.0011856	544.7921064729956	51.719	0.54406	51.572	51.477	52.021	-0.14735					25	15	2	0	0	0	0.03519	1	5500	5500		37.159	2.9866	1	527040			37013	13891	25341	25394	42681	42681					0.030634471337180003
LAGCGVRWAR	10	Unmodified	_LAGCGVRWAR_					0	0	0		ENST00000415992.5_1_9:139702603-139703092:+|nuORF	ENST00000415992.5_1_9:139702603-139703092:+|nuORF	ENST00000415992.5_1_9:139702603-139703092:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8350830078125	2	544.792735	1087.57092	-1.7328	-0.00094402	-0.37137	-0.00020232	-2.1042	-0.0011463	544.7923126775404	51.462	0.80907	51.549	51.189	51.998	0.087006					55	22	4	0	0	0	0.03519	1	5407	5407		37.159	0	1	487380			37014	13891	25341	25394	42682	42682					0.030634471337180003
LAGDLRGH	8	Unmodified	_LAGDLRGH_					0	0	0			REV__ENST00000499638.6_1_12:121660646-121661115:+|nuORF	REV__ENST00000499638.6_1_12:121660646-121661115:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.52203369140625	2	419.730126	837.4457	-0.11025	-4.6277E-05	0.084029	3.5269E-05	-0.026226	-1.1008E-05	419.730197022427	24.947	0.48137	24.772	24.554	25.035	-0.17484					16	10	2	0	0	0	0.027866	1	1115	1115		12.959	11.864	1	56265	+		37015	33898	25342	25395	42683	42683					0.020474782689916537
LAGDMKSKVVV	11	Unmodified	_LAGDMKSKVVV_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.7039794921875	2	573.831191	1145.64783	0.22257	0.00012772	-3.5202	-0.00202	-3.2976	-0.0018923	573.829095798495	63.424	0.5	63.166	62.96	63.46	-0.25824					26	12	3	0	0	0	0.024768	1	7123	7123		31.53	0	1	406790			37016	10433	25343	25396	42684	42684					0.0808320083954186
LAGDYVVF	8	Unmodified	_LAGDYVVF_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.23101806640625	2	442.231636	882.448719	-0.26122	-0.00011552	0.14888	6.584E-05	-0.11234	-4.968E-05	442.23161775509965	46.975	1.6118	46.878	46.539	48.151	-0.096649					107	43	4	0	0	0	0.88442	1	4610	4610		52.299	17.098	1	11530000	+		37017	24719	25344	25397	42685	42685					0.002793086031488201
LAGDYVVF	8	Unmodified	_LAGDYVVF_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.231689453125	2	442.231636	882.448719	0.075978	3.36E-05	-0.20895	-9.2405E-05	-0.13297	-5.8806E-05	442.23146374260193	47.263	1.5678	46.994	46.695	48.263	-0.26939					103	42	4	0	0	0	0.85409	2	4606	4584;4606		54.765	0	1	11562000	+		37018	24719	25344	25397	42686;42687	42687					0.002793086031488201
LAGDYVVF	8	Unmodified	_LAGDYVVF_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.2314453125	2	442.231636	882.448719	0.091805	4.0599E-05	-0.25525	-0.00011288	-0.16344	-7.228E-05	442.2314296782027	47.099	1.679	46.905	46.577	48.256	-0.19387					108	45	4	0	0	0	0.85409	2	4570	4570;4606		54.765	1.9018	1	11135000	+		37019	24719	25344	25397	42688;42689	42688					0.002793086031488201
LAGEIAGVNW	10	Unmodified	_LAGEIAGVNW_					0	0	0		ENSG00000111241|ENST00000228837|FGF6;FGF6|p.G64V|1|0.23|ENSG00000111241|chr12:4445380-4445380|C/A|missense_variant	ENSG00000111241|ENST00000228837|FGF6	ENSG00000111241|ENST00000228837|FGF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7960205078125	2	515.271824	1028.5291	0.011386	5.8667E-06	-4.3951	-0.0022647	-4.3837	-0.0022588	515.7704191253762	23.977	0.26529	23.762	23.644	23.909	-0.21511					7	5	2	0	0	0	0.03519	1	991	991		32.812	12.331	1	14054			37020	3095	25345	25398	42690	42690					0.015971699261854155
LAGEIYVMV	9	Oxidation (M)	_LAGEIYVM(Oxidation (M))V_		LAGEIYVM(1)V		LAGEIYVM(97)V	0	0	1		nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	nc|ENSG00000135269|Q9UGI8-2|TES	nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7640075683594	2	505.764986	1009.51542	-0.55987	-0.00028316	0.65276	0.00033014	0.092892	4.6982E-05	505.7651348962669	80.116	0.88266	80.138	79.771	80.654	0.021439					67	20	4	0	0	0	0.15889	1	9858	9858		97.473	8.8298	1	4493200			37021	4872	25346	25399	42691	42691		198			0.011041761027399843
LAGELRLD	8	Unmodified	_LAGELRLD_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.27984619140625	2	443.753267	885.491981	0.083694	3.7139E-05	-0.62182	-0.00027593	-0.53813	-0.0002388	443.7528454506461	55.332	0.55622	55.182	54.929	55.485	-0.15036					23	15	2	0	0	0	0.027866	1	6037	6037		45.972	0	1	199000	+		37022	23136	25347	25400	42692	42692					0.04465498380432109
LAGERAPSV	9	Unmodified	_LAGERAPSV_					0	0	0			REV__ENST00000371417.3_1_9:140512595-140513015:-|nuORF	REV__ENST00000371417.3_1_9:140512595-140513015:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2508850097656	2	450.250892	898.48723	0.4059	0.00018276	-0.30134	-0.00013568	0.10455	4.7075E-05	450.2506655179646	32.919	1.0026	32.982	32.465	33.468	0.062885					53	26	3	0	0	0	0.11092	1	2264	2264		108.09	3.3409	1	3397300	+		37023	31159	25348	25401	42693	42693					0.03392614237657199
LAGFENVW	8	Unmodified	_LAGFENVW_					0	0	0			REV__L3MBTL3|p.R36W|1|0.24|ENSG00000198945|chr6:130049285-130049285|C/T|missense_variant	REV__L3MBTL3|p.R36W|1|0.24|ENSG00000198945|chr6:130049285-130049285|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.2995300292969	2	468.23471	934.454868	-0.25507	-0.00011943	-0.27542	-0.00012896	-0.53049	-0.00024839	468.23442640142304	39.602	0.64423	39.376	38.983	39.627	-0.2257					26	16	2	0	0	0	0.027866	1	3298	3298		33.516	8.0654	1	347160	+		37024	36302	25349	25402	42694	42694					-0.014981731653392671
LAGFENVW	8	Unmodified	_LAGFENVW_					0	0	0			REV__L3MBTL3|p.R36W|1|0.24|ENSG00000198945|chr6:130049285-130049285|C/T|missense_variant	REV__L3MBTL3|p.R36W|1|0.24|ENSG00000198945|chr6:130049285-130049285|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.23471	934.454868	-0.24265	-0.00011362	0.30834	0.00014437	0.065688	3.0757E-05	468.23466450448586	39.499	0.64546	39.334	39.008	39.653	-0.16459	-0.023139	0.00012847	NaN	42.474	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343950	+		37025	36302	25349	25402							-0.014981731653392671
LAGFENVW	8	Unmodified	_LAGFENVW_					0	0	0			REV__L3MBTL3|p.R36W|1|0.24|ENSG00000198945|chr6:130049285-130049285|C/T|missense_variant	REV__L3MBTL3|p.R36W|1|0.24|ENSG00000198945|chr6:130049285-130049285|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.23471	934.454868	-0.29138	-0.00013643	0.4575	0.00021422	0.16612	7.7784E-05	468.23487846729876	39.585	0.7807	39.362	39.149	39.93	-0.22311	0.0044504	0.00026816	NaN	42.474	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382040	+		37026	36302	25349	25402							-0.014981731653392671
LAGFGFLTLL	10	Unmodified	_LAGFGFLTLL_					0	0	0		ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.3146362304688	2	526.312961	1050.61137	-0.48826	-0.00025698	3.3999	0.0017894	2.9116	0.0015324	526.3146636815833	74.805	2.303	74.805	74.128	76.431	0					194	58	5	0	0	0	0.2449	1	9199	9199		115.46	2.0474	1	16285000			37027	3336	25350	25403	42695	42695					0.08808692005140983
LAGFGFLTLL	10	Unmodified	_LAGFGFLTLL_					0	0	0		ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.3145141601562	2	526.312961	1050.61137	0.52039	0.00027389	2.794	0.0014705	3.3144	0.0017444	526.3142599494698	77.669	2.9652	77.427	77.009	79.974	-0.24232					170	70	3	0	0	0	0.47726	1	9289	9289		90.777	0.40684	1	1754800			37028	3336	25350	25403	42696	42696					0.08808692005140983
LAGFPRPL	8	Unmodified	_LAGFPRPL_					0	0	0		ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.24639892578125	2	435.763438	869.512323	0.46599	0.00020306	0.41558	0.0001811	0.88157	0.00038416	435.7637918953253	24.107	0.59034	24.186	24.003	24.594	0.078344					18	12	2	0	0	0	0.027866	1	961	961		15.636	1.8609	1	139090			37029	14545	25351	25404	42697	42697					0.0723471383089418
LAGFPRPL	8	Unmodified	_LAGFPRPL_					0	0	0		ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.763438	869.512323	-0.18051	-7.8659E-05	0.52644	0.0002294	0.34593	0.00015074	435.76380217625433	24.197	0.52264	24.197	23.951	24.474	0	0.013118	-0.00018057	NaN	15.636	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189340			37030	14545	25351	25404							0.0723471383089418
LAGFPRPL	8	Unmodified	_LAGFPRPL_					0	0	0		ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.763438	869.512323	-0.84089	-0.00036643	1.2616	0.00054975	0.42069	0.00018332	435.7640751911181	24.216	0.4408	24.169	23.957	24.398	-0.047148	-0.014807	0.00046013	NaN	15.636	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128560			37031	14545	25351	25404							0.0723471383089418
LAGFVVLAVL	10	Unmodified	_LAGFVVLAVL_					0	0	0			REV__nc|ENSG00000171462|Q6UY11-2|DLK2	REV__nc|ENSG00000171462|Q6UY11-2|DLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.77850341796875	2	501.323328	1000.6321	-0.23684	-0.00011874	0.10078	5.0523E-05	-0.13607	-6.8213E-05	501.32319345606453	68.788	0.53593	68.788	68.52	69.056	0					26	13	3	0	0	0	0.03519	1	8288	8288		35.201	0	1	297980	+		37032	19457	25352	25405	42698	42698					0.13181282384800852
LAGGGALLDR	10	Unmodified	_LAGGGALLDR_					0	0	0		ENST00000292377.3_1_7:99768105-99769260:-|nuORF	ENST00000292377.3_1_7:99768105-99769260:-|nuORF	ENST00000292377.3_1_7:99768105-99769260:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7511291503906	2	471.771991	941.529429	-0.013883	-6.5497E-06	-0.50827	-0.00023979	-0.52215	-0.00024634	471.7715932874354	45.011	0.55284	45.011	44.725	45.278	0					39	15	3	0	0	0	0.03519	1	4366	4366		79.451	0	1	1969800			37033	11803	25353	25406	42699	42699					0.05632589646040742
LAGGGVQSGEP	11	Unmodified	_LAGGGVQSGEP_					0	0	0		ENST00000379951.6_1_4:109089626-109090058:-|nuORF	ENST00000379951.6_1_4:109089626-109090058:-|nuORF	ENST00000379951.6_1_4:109089626-109090058:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.8056945800781	2	486.243264	970.471974	-0.22355	-0.0001087	1.0218	0.00049683	0.79822	0.00038813	486.24398436731457	34.889	0.27521	34.702	34.56	34.835	-0.18675					10	6	2	0	0	0	0.024044	1	2599	2599		49.536	0	1	91460			37034	13291	25354	25407	42700	42700					-0.01444297350190027
LAGGHIWVM	9	Unmodified	_LAGGHIWVM_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7684631347656	2	492.260205	982.505857	-0.05378	-2.6474E-05	3.3195	0.0016341	3.2658	0.0016076	492.26150338471354	42.568	0.17608	42.429	42.345	42.521	-0.13929					6	4	2	0	0	0	0.023092	1	3898	3898		49.211	0	1	251130	+		37035	26715	25355	25408	42701	42701					0.013904526078590607
LAGGLRLLD	9	Unmodified	_LAGGLRLLD_					0	0	0		ENSG00000160233|ENST00000291592|LRRC3	ENSG00000160233|ENST00000291592|LRRC3	ENSG00000160233|ENST00000291592|LRRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.25042724609375	2	464.284734	926.554916	-0.40004	-0.00018573	-0.3782	-0.00017559	-0.77824	-0.00036133	464.2849512108264	47.995	0.51786	47.842	47.406	47.924	-0.15301					22	15	2	0	0	0	0.024477	1	4831	4831		27.882	0	1	776820			37036	6797	25356	25409	42702	42702					0.08870064168456793
LAGGLRLLD	9	Unmodified	_LAGGLRLLD_					0	0	0		ENSG00000160233|ENST00000291592|LRRC3	ENSG00000160233|ENST00000291592|LRRC3	ENSG00000160233|ENST00000291592|LRRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.250732421875	2	464.284734	926.554916	-0.15138	-7.0283E-05	-1.0689	-0.00049628	-1.2203	-0.00056656	464.2840376279193	47.687	0.15444	47.746	47.615	47.769	0.059097					7	4	2	0	0	0	0.024021	1	4742	4742		58.782	0	1	312280			37037	6797	25356	25409	42703	42703					0.08870064168456793
LAGGPRRQW	9	Unmodified	_LAGGPRRQW_					0	0	0			REV__ENST00000228136.8_2_11:16760186-16766155:+|nuORF	REV__ENST00000228136.8_2_11:16760186-16766155:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7512817382812	2	520.79105	1039.56755	-0.11048	-5.7535E-05	1.9107	0.00099509	1.8003	0.00093756	520.7917447997875	42.298	0.35638	42.067	41.899	42.255	-0.2303					21	9	3	0	0	0	0.024517	1	3779	3779		19.36	0	1	184640	+		37038	29389	25357	25410	42704	42704					0.049345203513667
LAGGQLQL	8	Unmodified	_LAGGQLQL_					0	0	0		ENST00000320849.8_1_20:34844201-34844534:+|nuORF	ENST00000320849.8_1_20:34844201-34844534:+|nuORF	ENST00000320849.8_1_20:34844201-34844534:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8874816894531	2	400.237253	798.459953	0.16963	6.7893E-05	0.42173	0.00016879	0.59136	0.00023668	400.2373122176867	30.405	0.70134	30.405	30.137	30.838	0					26	16	2	0	0	0	0.027866	1	1989	1989		19.36	0	1	212260			37039	12198	25358	25411	42705	42705					0.052661306972822786
LAGGRHHLY	9	Unmodified	_LAGGRHHLY_					0	0	0			REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF	REV__ENST00000442496.1_1_22:37880295-37880663:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.803466796875	2	512.277775	1022.541	-0.40073	-0.00020528	-0.81532	-0.00041767	-1.2161	-0.00062296	512.2771848850406	52.265	0.8475	52.265	51.942	52.789	0					30	21	2	0	0	0	0.024357	1	5607	5607		44.531	21.008	1	245490	+		37040	32563	25359	25412	42706	42706					0.030628314600335216
LAGGTKQDAM	10	Unmodified	_LAGGTKQDAM_					0	0	0			REV__ENST00000482860.1_1_7:139107030-139107090:+|nuORF	REV__ENST00000482860.1_1_7:139107030-139107090:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	496.2478332519531	2	496.247492	990.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.633	1	26.47	25.97	26.97	-0.16331								0	0	0	0.75273	1	1375	1375		44.377	3.8046	1		+		37041	33495	25360	25413	42707	42707					-0.015190667052252138
LAGGVSAVR	9	Unmodified	_LAGGVSAVR_					0	0	0		ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.24859619140625	2	415.248152	828.481751	-0.23383	-9.7097E-05	0.052651	2.1863E-05	-0.18118	-7.5233E-05	415.24819602679423	35.905	1.3177	35.905	35.57	36.887	0					101	35	5	0	0	0	0.20967	1	2828	2828		87.754	16.459	1	20766000			37042	11085	25361	25414	42708	42708					0.060649354458519156
LAGHKKDIGRL	11	Unmodified	_LAGHKKDIGRL_					0	0	0		ENSG00000198759|ENST00000361306|EGFL6;nc|ENSG00000198759|Q8IUX8-2|EGFL6	ENSG00000198759|ENST00000361306|EGFL6	ENSG00000198759|ENST00000361306|EGFL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.24755859375	3	403.247173	1206.71969	0.67687	0.00027295	-1.2139	-0.00048949	-0.53701	-0.00021655	403.24668819074594	103.44	1.2257	103.31	102.83	104.06	-0.12783					74	29	4	0	0	0	1.0532	1	12867	12867		24.232	0.85391	1	1613900			37043	10192	25362	25415	42709	42709					0.12459876308275852
LAGHNTPVA	9	Unmodified	_LAGHNTPVA_					0	0	0			REV__ENST00000498157.1_1_1:109816296-109816506:+|nuORF	REV__ENST00000498157.1_1_1:109816296-109816506:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.2535095214844	2	440.237784	878.461016	-0.88713	-0.00039055	1.1727	0.00051628	0.2856	0.00012573	440.23814959018995	37.935	1.0927	37.852	37.36	38.453	-0.082516					61	30	3	0	0	0	0.024412	1	3119	3119		17.365	0.89182	1	1143200	+		37044	33875	25363	25416	42710	42710					0.016923450661806783
LAGHPPAPQ	9	Unmodified	_LAGHPPAPQ_					0	0	0		ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.26336669921875	2	444.240327	886.466101	-0.52781	-0.00023447	-3.6506	-0.0016217	-4.1784	-0.0018562	444.23853531822994	29.176	0.5593	29.003	28.766	29.325	-0.17258					29	12	3	0	0	0	0.024412	1	1795	1795		40.573	13.777	1	560300			37045	17274	25364	25417	42711	42711					0.018326489287915138
LAGIDAWTV	9	Unmodified	_LAGIDAWTV_					0	0	0			REV__nc|ENSG00000143748|O15381-5|NVL	REV__nc|ENSG00000143748|O15381-5|NVL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.287841796875	2	473.255643	944.496732	-0.15676	-7.4188E-05	0.19832	9.3854E-05	0.041556	1.9667E-05	473.25552790503247	93.823	0.7284	93.829	93.519	94.247	0.0059814					27	17	2	0	0	0	0.024443	1	11879	11879		12.959	9.2748	1	190540	+		37046	24276	25365	25418	42712	42712					0.022263825231902956
LAGIDAWTV	9	Unmodified	_LAGIDAWTV_					0	0	0			REV__nc|ENSG00000143748|O15381-5|NVL	REV__nc|ENSG00000143748|O15381-5|NVL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.255643	944.496732	0.31905	0.00015099	-0.16311	-7.7193E-05	0.15594	7.3798E-05	473.2556369547849	93.735	0.51979	93.613	93.322	93.842	-0.12215	-0.12352	-0.00015079	NaN	12.959	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49662	+		37047	24276	25365	25418							0.022263825231902956
LAGIDAWTV	9	Unmodified	_LAGIDAWTV_					0	0	0			REV__nc|ENSG00000143748|O15381-5|NVL	REV__nc|ENSG00000143748|O15381-5|NVL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.255643	944.496732	-0.20255	-9.5858E-05	0.14066	6.6566E-05	-0.061894	-2.9292E-05	473.2555236833911	93.821	0.47718	93.673	93.392	93.869	-0.14771	-0.063117	0.00013673	NaN	12.959	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72339	+		37048	24276	25365	25418							0.022263825231902956
LAGIQEPK	8	Unmodified	_LAGIQEPK_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.28729248046875	2	428.25036	854.486168	1.7094	0.00073204	-2.1965	-0.00094067	-0.48718	-0.00020863	428.24917753993543	63.23	0.7855	63.284	63.09	63.875	0.054104					27	21	2	0	0	0	0.027866	1	7281	7281		30.504	0	1	143590	+		37049	23873	25366	25419	42713	42713					0.053103998687561216
LAGKARIP	8	Unmodified	_LAGKARIP_					0	0	0		ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.26837158203125	2	413.268887	824.523222	-0.68917	-0.00028481	0.61355	0.00025356	-0.075626	-3.1254E-05	413.2689993171392	43.579	0.56775	43.359	43.104	43.672	-0.21939					39	15	3	0	0	0	1.0133	1	3996	3996		35.201	9.7505	1	1964600			37050	13951	25367	25420	42714	42714					0.10394116205168302
LAGKARIP	8	Unmodified	_LAGKARIP_					0	0	0		ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.268887	824.523222	-0.25523	-0.00010548	0.53044	0.00021921	0.2752	0.00011373	413.2689708248685	43.419	0.70059	43.306	43.071	43.772	-0.11253	-0.038278	-0.00012906	NaN	35.201	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	875200			37051	13951	25367	25420							0.10394116205168302
LAGKARIP	8	Unmodified	_LAGKARIP_					0	0	0		ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	413.268887	824.523222	-0.7031	-0.00029057	0.81039	0.00033491	0.10729	4.4341E-05	413.2690858183945	43.606	0.58011	43.368	43.099	43.679	-0.23737	0.02373	0.00010233	NaN	35.201	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039200			37052	13951	25367	25420							0.10394116205168302
LAGKFKTAS	9	Unmodified	_LAGKFKTAS_					0	0	0			REV__ENSG00000188522|ENST00000388995|FAM83G	REV__ENSG00000188522|ENST00000388995|FAM83G	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7725524902344	2	461.77146	921.528367	0.16911	7.8089E-05	2.0933	0.00096663	2.2624	0.0010447	461.7720766093848	98.419	0.93749	98.419	98.063	99.001	0					47	21	3	0	0	0	0.4752	1	12586	12586		60.972	5.4677	1	819260	+		37053	28042	25368	25421	42715	42715					0.0644637527714167
LAGKFKTAS	9	Unmodified	_LAGKFKTAS_					0	0	0			REV__ENSG00000188522|ENST00000388995|FAM83G	REV__ENSG00000188522|ENST00000388995|FAM83G	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	461.77146	921.528367	1.1706	0.00054053	1.9024	0.00087849	3.073	0.001419	461.77207881441643	98.214	0.37351	98.09	97.911	98.285	-0.12413	-0.23772	0.00015866	NaN	60.972	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139680	+		37054	28042	25368	25421							0.0644637527714167
LAGKHKTK	8	Unmodified	_LAGKHKTK_					0	0	0		ENSG00000056050|ENST00000393381|HPF1;ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENSG00000056050|ENST00000393381|HPF1	ENSG00000056050|ENST00000393381|HPF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7513122558594	2	441.779619	881.544686	0.40544	0.00017912	0.084767	3.7448E-05	0.49021	0.00021656	441.77947737789384	24.906	1.0179	24.984	24.275	25.293	0.078346					33	22	3	0	0	0	0.027866	1	1070	1070		6.7355	0	1	283200			37055	1194	25369	25422	42716	42716					0.09917501233883286
LAGKKKGF	8	Unmodified	_LAGKKKGF_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.23834228515625	2	424.771263	847.527973	-0.42238	-0.00017941	0.60145	0.00025548	0.17908	7.6067E-05	424.7714287366564	29.498	0.59083	29.326	29.07	29.66	-0.17258					21	13	2	0	0	0	0.027866	1	1829	1829		8.8223	0	1	118600			37056	3617	25370	25423	42717	42717					0.09811000347940535
LAGKPNGLL	9	Unmodified	_LAGKPNGLL_					0	0	0			REV__ENST00000487475.5_1_3:184019439-184019490:+|nuORF	REV__ENST00000487475.5_1_3:184019439-184019490:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.788330078125	2	441.774003	881.533452	-0.13751	-6.0749E-05	2.0198	0.0008923	1.8823	0.00083155	441.7746991878563	40.826	0.49052	40.849	40.764	41.254	0.023006					14	13	2	0	0	0	0.024412	1	3604	3604		17.365	0	1	195630	+		37057	33608	25371	25424	42718	42718					0.08794679139748496
LAGLALTDREL	11	Unmodified	_LAGLALTDREL_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	587.2958984375	2	586.337695	1170.66084	0.49829	0.00029217	-0.7832	-0.00045922	-0.28491	-0.00016705	586.3372618196595	73.24	1.0285	73.25	72.529	73.558	0.0096512					75	25	4	0	0	0	0.024788	1	8886	8886		19.997	13.261	1	1606900	+		37058	20514	25372	25425	42719	42719					0.08233355223273975
LAGLARLR	8	Unmodified	_LAGLARLR_					0	0	0		ENST00000344575.4_1_7:72848585-72849218:+|nuORF;ENSG00000100156|ENST00000681075|SLC16A8	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.28741455078125	2	435.287611	868.56067	-0.62676	-0.00027282	0.22968	9.9976E-05	-0.39708	-0.00017285	435.28769109878465	26.134	1.5756	25.898	25.425	27.001	-0.23603					100	40	4	0	0	0	0.85409	3	1312	1289;1312;1326		54.765	10.234	1	13408000			37059	12553	25373	25426	42720;42721;42722	42721					0.12113207470792986
LAGLARLR	8	Unmodified	_LAGLARLR_					0	0	0		ENST00000344575.4_1_7:72848585-72849218:+|nuORF;ENSG00000100156|ENST00000681075|SLC16A8	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.287353515625	2	435.287611	868.56067	-0.14409	-6.272E-05	-0.3983	-0.00017337	-0.54239	-0.00023609	435.28744784642635	25.847	2.5229	25.677	25.163	27.686	-0.17078					136	63	5	0	0	0	0.95417	2	1270	1270;1284		44.531	7.5026	1	17898000			37060	12553	25373	25426	42723;42724	42723					0.12113207470792986
LAGLARLR	8	Unmodified	_LAGLARLR_					0	0	0		ENST00000344575.4_1_7:72848585-72849218:+|nuORF;ENSG00000100156|ENST00000681075|SLC16A8	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2872314453125	2	435.287611	868.56067	-0.66839	-0.00029094	0.19838	8.6352E-05	-0.47001	-0.00020459	435.28766649982805	26.014	2.4628	25.851	25.373	27.835	-0.16331					142	62	4	0	0	0	0.95417	3	1230	1230;1239;1264		44.531	7.5026	1	18390000			37061	12553	25373	25426	42725;42726;42727	42725					0.12113207470792986
LAGLCRKI	8	Unmodified	_LAGLCRKI_					0	0	0			REV__ENSG00000255151|ENST00000527482|GLYATL1B	REV__ENSG00000255151|ENST00000527482|GLYATL1B	MSMS	OPSCC_40_ClassI_Rep-3	6	437.2713623046875	2	437.270573	872.526593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.954	1	20.741	20.241	21.241	-0.2128								0	0	0	0.81261	1	583	583		33.516	1.5607	1		+		37062	29062	25374	25427	42728	42728					0.08523042987519602
LAGLEGDVK	9	Unmodified	_LAGLEGDVK_					0	0	0			REV__ENSG00000106125|ENST00000265299|MINDY4	REV__ENSG00000106125|ENST00000265299|MINDY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7611083984375	2	451.2531	900.491647	0.60136	0.00027136	2.2068	0.00099583	2.8082	0.0012672	451.2537807431882	22.445	0.22698	22.256	22.147	22.374	-0.18894					6	4	2	0	0	0	0.024381	1	788	788		21.96	0	1	12092	+		37063	21598	25375	25428	42729	42729					0.03742078660570769
LAGLGCSLSE	10	Unmodified	_LAGLGCSLSE_					0	0	0		ENST00000424306.5_1_X:135991612-135991750:+|nuORF	ENST00000424306.5_1_X:135991612-135991750:+|nuORF	ENST00000424306.5_1_X:135991612-135991750:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.26031494140625	2	475.236593	948.458632	-0.95552	-0.0004541	3.6529	0.001736	2.6974	0.0012819	475.2382659262376	43.711	0.58403	43.492	43.316	43.9	-0.21939					31	15	3	0	0	0	0.03519	1	4024	4024		24.203	4.8428	1	216390			37064	14039	25376	25429	42730	42730					-0.017658714537788
LAGLGGVPKL	10	Unmodified	_LAGLGGVPKL_					0	0	0		ENST00000550120.1_1_12:54778385-54778418:-|nuORF	ENST00000550120.1_1_12:54778385-54778418:-|nuORF	ENST00000550120.1_1_12:54778385-54778418:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7976379394531	2	462.797478	923.580402	1.0133	0.00046895	-0.88308	-0.00040869	0.13022	6.0264E-05	462.7970051402702	58.898	1.0561	58.711	58.275	59.331	-0.18705					66	28	4	0	0	0	0.41195	1	6671	6671		97.473	3.4663	1	6423900			37065	16575	25377	25430	42731	42731					0.11555538690890899
LAGLGGVPKL	10	Unmodified	_LAGLGGVPKL_					0	0	0		ENST00000550120.1_1_12:54778385-54778418:-|nuORF	ENST00000550120.1_1_12:54778385-54778418:-|nuORF	ENST00000550120.1_1_12:54778385-54778418:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7978515625	2	462.797478	923.580402	0.97092	0.00044934	-0.98655	-0.00045657	-0.015634	-7.2355E-06	462.79700159247943	58.452	1.1645	58.543	58.118	59.283	0.091217					68	31	4	0	0	0	0.52589	1	6574	6574		85.359	14.064	1	6265200			37066	16575	25377	25430	42732	42732					0.11555538690890899
LAGLGLVLGAG	11	Unmodified	_LAGLGLVLGAG_					0	0	0			REV__ENST00000466312.5_1_6:31691160-31692010:+|nuORF	REV__ENST00000466312.5_1_6:31691160-31692010:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7718811035156	2	470.794935	939.575317	0.31634	0.00014893	-0.43421	-0.00020442	-0.11786	-5.5489E-05	470.7945011204128	46.741	0.33373	46.792	46.615	46.949	0.051395					14	8	3	0	0	0	0.02474	1	4573	4573		24.203	0	1	147110	+		37067	28602	25378	25431	42733	42733					0.10311234828282068
LAGLGPRR	8	Unmodified	_LAGLGPRR_					0	0	0			REV__ENST00000480955.1_1_3:132379321-132379543:+|nuORF	REV__ENST00000480955.1_1_3:132379321-132379543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.7504577636719	2	420.264136	838.51372	-0.35298	-0.00014835	0.94241	0.00039606	0.58942	0.00024771	420.2643777233148	42.33	0.58023	42.098	41.769	42.349	-0.23186					35	15	3	0	0	0	0.027866	1	3761	3761		21.702	1.2205	1	1051200	+		37068	32960	25379	25432	42734	42734					0.08800347919645901
LAGLINLTPGI	11	Unmodified	_LAGLINLTPGI_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.3010864257812	2	541.334424	1080.6543	-0.74179	-0.00040156	0.52097	0.00028202	-0.22082	-0.00011954	541.3347189314288	65.347	0.40704	65.113	64.93	65.337	-0.2345					14	9	2	0	0	0	0.024752	1	7433	7433		32.812	0	1	121840	+		37069	20986	25380	25433	42735	42735					0.11719462062546881
LAGLIRAAAPE	11	Unmodified	_LAGLIRAAAPE_					0	0	0			REV__TMEM131-OLA1|1|fusion	REV__TMEM131-OLA1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3222045898438	2	541.321848	1080.62914	-0.13686	-7.4083E-05	-0.92614	-0.00050134	-1.063	-0.00057542	541.3213201709734	60.049	2.0846	60.049	59.482	61.566	0					150	55	4	0	0	0	0.93615	1	6913	6913		49.442	5.0644	1	27771000	+		37070	37705	25381	25434	42736	42736					0.09205407259969434
LAGLIWYCFLL	11	Unmodified	_LAGLIWYCFLL_					0	0	0		ENST00000547237.1_1_14:25900789-25901323:-|nuORF	ENST00000547237.1_1_14:25900789-25901323:-|nuORF	ENST00000547237.1_1_14:25900789-25901323:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.75079345703125	3	437.91051	1310.7097	0.036418	1.5948E-05	0.014497	6.3484E-06	0.050915	2.2296E-05	437.9103415652137	45.178	0.67225	44.967	44.677	45.349	-0.21109					50	18	4	0	0	0	0.024804	1	4229	4229		15.333	0	1	968080			37071	16526	25382	25435	42737	42737					0.06677552258679498
LAGLKGEYF	9	Unmodified	_LAGLKGEYF_					0	0	0		ENST00000268043.8_1_15:65108274-65108469:-|nuORF	ENST00000268043.8_1_15:65108274-65108469:-|nuORF	ENST00000268043.8_1_15:65108274-65108469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.821533203125	2	499.271293	996.528032	-1.0374	-0.00051794	-3.3178	-0.0016565	-4.3552	-0.0021744	499.269588521729	39.576	0.75452	39.478	39.163	39.918	-0.098751					43	20	3	0	0	0	0.024487	1	3387	3387		17.365	0	1	298400			37072	11623	25383	25436	42738	42738					0.02962955557291025
LAGLLALSR	9	Unmodified	_LAGLLALSR_					0	0	0			REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.79779052734375	2	457.295102	912.575651	-0.13104	-5.9925E-05	-0.70299	-0.00032148	-0.83404	-0.0003814	457.294653382303	65.013	0.54129	65.05	64.78	65.321	0.037384					32	14	3	0	0	0	0.024325	1	7579	7579		40.573	7.0796	1	1127300	+		37073	25439	25384	25437	42739	42739					0.11586654548125352
LAGLLFLVVG	10	Unmodified	_LAGLLFLVVG_					0	0	0		nc|ENSG00000170417|Q6ZP80-3|TMEM182;nc|ENSG00000170417|Q6ZP80-2|TMEM182;ENST00000484094.1_1_2:103414278-103431424:+|nuORF;ENST00000488134.5_1_2:103353421-103431424:+|nuORF;ENSG00000170417|ENST00000412401|TMEM182	nc|ENSG00000170417|Q6ZP80-3|TMEM182	nc|ENSG00000170417|Q6ZP80-3|TMEM182	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3230285644531	2	501.323328	1000.6321	-0.34869	-0.00017481	0.35502	0.00017798	0.0063362	3.1765E-06	501.32333177654846	73.69	0.54869	73.425	73.099	73.647	-0.26479					45	13	4	0	0	0	0.59161	1	8685	8685		77.944	1.0972	1	2503400			37074	8037	25385	25438	42740	42740					0.1318128238481222
LAGLLKKDP	9	Unmodified	_LAGLLKKDP_					0	0	0		ENST00000496089.6_1_19:40739781-40742062:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000496089.6_1_19:40739781-40742062:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2	nc|ENSG00000105221|P31751-2|AKT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.3019714355469	2	477.80276	953.590967	0.22571	0.00010784	0.28055	0.00013405	0.50625	0.00024189	477.80244322282726	33.653	0.87655	33.422	33.114	33.99	-0.23107					58	21	5	0	0	0	0.90698	1	2402	2402		31.955	1.6371	1	2239800			37075	15558;2647	25386	25439	42741	42741					0.11231521345314377
LAGLLVGTLD	10	Unmodified	_LAGLLVGTLD_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2916259765625	2	486.292225	970.569897	-0.35508	-0.00017267	-0.38657	-0.00018798	-0.74165	-0.00036066	486.2919999455696	60.048	1.7195	59.848	59.281	61	-0.20016					130	45	6	0	0	0	0.91051	1	6902	6902		53.351	2.016	1	23652000			37076	2974	25387	25440	42742	42742					0.08343511245811897
LAGLNKAET	9	Unmodified	_LAGLNKAET_					0	0	0		ENST00000402426.2_1_6:73765044-73765512:+|nuORF	ENST00000402426.2_1_6:73765044-73765512:+|nuORF	ENST00000402426.2_1_6:73765044-73765512:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	458.758549	915.502546	-0.32794	-0.00015045	-1.449	-0.00066473	-1.7769	-0.00081518	458.75840542031966	26.517	0.24747	26.494	26.364	26.611	-0.023088					7	5	2	0	0	0	0.024205	1	1351	1351		53.351	2.016	1	27981			37077	13683	25388	25441	42743	42743					0.04141481034844219
LAGLNKAET	9	Unmodified	_LAGLNKAET_					0	0	0		ENST00000402426.2_1_6:73765044-73765512:+|nuORF	ENST00000402426.2_1_6:73765044-73765512:+|nuORF	ENST00000402426.2_1_6:73765044-73765512:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.758549	915.502546	-0.078944	-3.6216E-05	-7.0152	-0.0032183	-7.0941	-0.0032545	458.75520441991046	26.252	0.49745	26.252	25.867	26.365	0	-0.12114	-0.00078489	NaN	35.618	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257700			37078	13683	25388	25441							0.04141481034844219
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8132934570312	2	513.813325	1025.6121	0.3752	0.00019278	-0.70482	-0.00036215	-0.32962	-0.00016936	513.8130107014696	60.047	1.6266	60.047	59.257	60.884	0					85	43	3	0	0	0	0.0090209	3	6867	6867;6890;6902		171.53	43.903	1	10724000			37079	7880	25389	25442	42744;42745;42746	42744					0.10031486654179389
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MSMS	OPSCC_39_ClassI_Rep-2	2	513.8136596679688	2	513.813325	1025.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.131	1	59.931	59.431	60.431	-0.20016								0	0	0	0.17437	1	6869	6869		145.16	3.6352	1				37080	7880	25389	25442	42747	42747					0.10031486654179389
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MSMS	OPSCC_39_ClassI_Rep-2	2	513.8140869140625	2	513.813325	1025.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.202	1	60.002	59.502	60.502	-0.20016								0	0	0	5.7817E-06	1	6880	6880		180.93	31.939	1				37081	7880	25389	25442	42748	42748					0.10031486654179389
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MSMS	OPSCC_39_ClassI_Rep-2	2	513.8150634765625	2	513.813325	1025.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.281	1	60.078	59.578	60.578	-0.2028								0	0	0	0.002601	1	6892	6892		171.53	42.111	1				37082	7880	25389	25442	42749	42749					0.10031486654179389
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MSMS	OPSCC_39_ClassI_Rep-2	2	513.8165283203125	2	513.813325	1025.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.359	1	60.145	59.645	60.645	-0.21339								0	0	0	0.21696	1	6904	6904		120.87	3.0574	1				37083	7880	25389	25442	42750	42750					0.10031486654179389
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8148803710938	2	513.813325	1025.6121	-1.4228	-0.00073107	1.0747	0.00055218	-0.34816	-0.00017889	513.8139394840836	59.951	1.6467	60.03	59.419	61.066	0.078888					86	43	3	0	0	0	0.11225	3	6794	6794;6806;6820		132.76	42.388	1	9441900			37084	7880	25389	25442	42751;42752;42753	42751					0.10031486654179389
LAGLREPI	8	Unmodified	_LAGLREPI_					0	0	0			REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7655029296875	2	434.766178	867.517802	0.057252	2.4891E-05	0.61985	0.00026949	0.6771	0.00029438	434.76642591463957	54.813	1.1455	54.813	54.428	55.573	0					81	32	4	0	0	0	0.53523	2	6031	6020;6031		82.305	2.854	1	7385000	+		37085	35903	25390	25443	42754;42755	42755					0.07874392622716186
LAGLREPI	8	Unmodified	_LAGLREPI_					0	0	0			REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.76556396484375	2	434.766178	867.517802	0.021152	9.1963E-06	0.6375	0.00027716	0.65865	0.00028636	434.76640567985066	54.913	1.1106	54.762	54.375	55.485	-0.15036					81	31	4	0	0	0	0.77775	1	6019	6019		60.972	2.19	1	7144700	+		37086	35903	25390	25443	42756	42756					0.07874392622716186
LAGLREPI	8	Unmodified	_LAGLREPI_					0	0	0			REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	REV__ENST00000604104.1_1_9:98268979-98269411:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.765380859375	2	434.766178	867.517802	0.54329	0.0002362	0.22214	9.658E-05	0.76543	0.00033278	434.76622976542427	54.618	1.1562	54.716	54.328	55.484	0.098015					79	32	5	0	0	0	0.71833	1	5921	5921		65.803	0	1	7006500	+		37087	35903	25390	25443	42757	42757					0.07874392622716186
LAGLRGPSL	9	Unmodified	_LAGLRGPSL_					0	0	0		SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|31|1|anti-sense	SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|31|1|anti-sense	SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|31|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2718505859375	2	442.271627	882.528701	0.20446	9.0428E-05	-0.10084	-4.46E-05	0.10362	4.5828E-05	442.27144999075483	46.534	1.0207	46.534	46.056	47.076	0					68	27	4	0	0	0	0.12602	1	4604	4604		104.75	11.551	1	4307000			37088	38035	25391	25444	42758	42758					0.08273794997001005
LAGLRPHS	8	Unmodified	_LAGLRPHS_					0	0	0		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.2384033203125	2	425.748319	849.482085	-0.20139	-8.5741E-05	-0.40463	-0.00017227	-0.60602	-0.00025801	425.7483639012619	29.929	0.42224	29.685	29.482	29.905	-0.24415					11	9	2	0	0	0	0.027866	1	1844	1844		19.36	15.375	1	43213			37089	3490	25392	25445	42759	42759					0.05132355165710578
LAGLRPHS	8	Unmodified	_LAGLRPHS_					0	0	0		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.748319	849.482085	-1.6545	-0.00070441	1.9089	0.00081273	0.25443	0.00010832	425.74893996242315	29.594	0.68709	29.594	29.37	30.057	0	-0.00037842	0.00092756	NaN	19.36	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238000			37090	3490	25392	25445							0.05132355165710578
LAGLRPHS	8	Unmodified	_LAGLRPHS_					0	0	0		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	425.748319	849.482085	-0.63725	-0.00027131	0.69871	0.00029748	0.061469	2.617E-05	425.7484369914305	29.561	0.68578	29.564	29.351	30.036	0.0031376	-0.030306	-0.00010294	NaN	19.36	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193100			37091	3490	25392	25445							0.05132355165710578
LAGLRPHS	8	Unmodified	_LAGLRPHS_					0	0	0		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	425.748319	849.482085	-0.34821	-0.00014825	0.73806	0.00031423	0.38985	0.00016598	425.7484915825145	29.385	0.83828	29.463	29.128	29.966	0.078344	-0.1315	-6.9434E-05	NaN	19.36	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195340			37092	3490	25392	25445							0.05132355165710578
LAGLSILLP	9	Unmodified	_LAGLSILLP_					0	0	0		ENST00000368679.8_1_10:127702768-127702819:-|nuORF	ENST00000368679.8_1_10:127702768-127702819:-|nuORF	ENST00000368679.8_1_10:127702768-127702819:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7454833984375	2	448.794404	895.574254	-0.81802	-0.00036713	4.0122	0.0018006	3.1942	0.0014335	448.7961470464616	47.399	0.43603	47.458	47.179	47.615	0.059097					19	12	2	0	0	0	0.024466	1	4685	4685		33.516	0	1	105540			37093	12901	25393	25446	42760	42760					0.12229020459392359
LAGLSILLP	9	Unmodified	_LAGLSILLP_					0	0	0		ENST00000368679.8_1_10:127702768-127702819:-|nuORF	ENST00000368679.8_1_10:127702768-127702819:-|nuORF	ENST00000368679.8_1_10:127702768-127702819:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	448.794404	895.574254	0.21085	9.463E-05	2.053	0.00092136	2.2638	0.001016	448.79520949883437	47.452	0.37288	47.183	46.977	47.35	-0.26939	-0.15759	-0.00054293	NaN	25.45	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69188			37094	12901	25393	25446							0.12229020459392359
LAGLSPVLHS	10	Unmodified	_LAGLSPVLHS_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7182312011719	2	497.290017	992.565481	-0.45592	-0.00022673	-2.8109	-0.0013978	-3.2668	-0.0016245	497.28840310008195	27.78	0.45804	27.773	27.542	28	-0.0072269					22	11	3	0	0	0	0.03519	1	1579	1579		53.351	17.733	1	219790			37095	5446	25394	25447	42761	42761					0.06890046822900331
LAGLSPVLHS	10	Unmodified	_LAGLSPVLHS_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.290017	992.565481	-0.30836	-0.00015334	-2.5609	-0.0012735	-2.8693	-0.0014269	497.2885396507445	27.784	0.3467	27.784	27.616	27.963	0	0.046267	0.00024372	NaN	53.351	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204350			37096	5446	25394	25447							0.06890046822900331
LAGLSWYF	8	Unmodified	_LAGLSWYF_					0	0	0		ENST00000394729.6_1_3:53226324-53226528:+|nuORF	ENST00000394729.6_1_3:53226324-53226528:+|nuORF	ENST00000394729.6_1_3:53226324-53226528:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7726745605469	2	478.747453	955.480354	-0.10543	-5.0476E-05	-1.2279	-0.00058786	-1.3333	-0.00063834	478.74676521303275	44.731	0.48423	44.731	44.485	44.97	0					23	13	2	0	0	0	0.027866	1	4328	4328		37.028	0	1	636140			37097	13497	25395	25448	42762	42762					0.0008330135708547459
LAGLTTYLL	9	Unmodified	_LAGLTTYLL_					0	0	0		ENSG00000181634|ENST00000374045|TNFSF15	ENSG00000181634|ENST00000374045|TNFSF15	ENSG00000181634|ENST00000374045|TNFSF15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7620849609375	2	482.789318	963.564084	0.6455	0.00031164	-0.91468	-0.0004416	-0.26918	-0.00012996	482.7888078098609	86.489	0.64323	86.489	86.214	86.857	0					21	14	2	0	0	0	0.024466	1	10846	10846		25.45	0	1	60835			37098	9056	25396	25449	42763	42763					0.08084412734137914
LAGMYLSL	8	Unmodified	_LAGMYLSL_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2382507324219	2	434.235864	866.457176	0.052996	2.3013E-05	4.4245	0.0019213	4.4775	0.0019443	434.2377809813172	34.319	1.8761	34.314	33.412	35.288	-0.0045624					109	48	4	0	0	0	0.61897	1	2516	2516		74.517	8.7134	1	7425400	+		37099	24935	25397	25450	42764	42764					0.018605392481163108
LAGNEDKL	8	Unmodified	_LAGNEDKL_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A;REV__ENSG00000077157|ENST00000608999|PPP1R12B	REV__ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.23138427734375	2	430.229625	858.444697	-0.43636	-0.00018774	2.6202	0.0011273	2.1838	0.00093954	430.23057766107627	26.153	0.7541	26.13	25.651	26.405	-0.023088					54	17	4	0	0	0	0.30053	1	1283	1283		111.65	6.9017	1	1552000	+		37100	20582;20230	25398	25451	42765	42765					0.009812191094397349
LAGNEDKL	8	Unmodified	_LAGNEDKL_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A;REV__ENSG00000077157|ENST00000608999|PPP1R12B	REV__ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	430.229625	858.444697	-0.43166	-0.00018571	2.239	0.00096326	1.8073	0.00077755	430.2305479846648	26.147	0.79497	26.147	25.652	26.447	0	0.11363	-0.00092091	NaN	111.65	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1566500	+		37101	20582;20230	25398	25451							0.009812191094397349
LAGNEDKL	8	Unmodified	_LAGNEDKL_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A;REV__ENSG00000077157|ENST00000608999|PPP1R12B	REV__ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	430.229625	858.444697	0.52515	0.00022593	7.6525	0.0032923	8.1776	0.0035183	430.23249631034054	25.743	0.67097	25.823	25.459	26.13	0.08009	-0.21004	0.0037372	NaN	111.65	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614230	+		37102	20582;20230	25398	25451							0.009812191094397349
LAGPEDALAR	10	Unmodified	_LAGPEDALAR_					0	0	0		ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	ENSG00000125864|ENST00000377873|BFSP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.75604248046875	2	506.774731	1011.53491	-0.77093	-0.00039069	2.442	0.0012375	1.6711	0.00084686	506.7756169046408	35.064	0.41842	35.064	34.746	35.164	0					23	10	3	0	0	0	0.03519	1	2645	2645		27.882	5.9224	1	282100			37103	4155	25399	25452	42766	42766					0.029602684378460253
LAGPGHLW	8	Unmodified	_LAGPGHLW_					0	0	0			REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	REV__ENST00000263208.5_1_22:19398282-19419255:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.23834228515625	2	425.732138	849.449723	-0.4475	-0.00019052	-2.0937	-0.00089135	-2.5412	-0.0010819	425.73123540433807	29.599	0.59083	29.427	29.07	29.66	-0.17258					17	13	2	0	0	0	0.027866	1	1829	1829		10.185	0	1	55392	+		37104	29681	25400	25453	42767	42767					0.018975677626940524
LAGPGRLQP	9	Unmodified	_LAGPGRLQP_					0	0	0		ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.2430114746094	2	454.769252	907.52395	-0.37561	-0.00017081	0.62291	0.00028328	0.24731	0.00011247	454.7693345724859	36.237	0.8404	36.237	35.924	36.764	0					41	23	2	0	0	0	0.024325	1	2934	2934		50.025	12.865	1	314810			37105	15196	25401	25454	42768	42768					0.06648910854232781
LAGPGRLQP	9	Unmodified	_LAGPGRLQP_					0	0	0		ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.24298095703125	2	454.769252	907.52395	-0.85515	-0.0003889	1.3215	0.00060096	0.46631	0.00021207	454.769655802996	36.117	0.69877	36.075	35.83	36.529	-0.042454					36	19	2	0	0	0	0.024183	1	2882	2882		71.378	37.862	1	368270			37106	15196	25401	25454	42769	42769					0.06648910854232781
LAGPGRLQP	9	Unmodified	_LAGPGRLQP_					0	0	0		ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2430114746094	2	454.769252	907.52395	-0.27958	-0.00012715	1.9936	0.00090662	1.714	0.00077947	454.76938407256694	36.146	0.82882	36.184	35.855	36.684	0.038044					39	23	3	0	0	0	0.024183	1	2837	2837		60.294	14.342	1	330200			37107	15196	25401	25454	42770	42770					0.06648910854232781
LAGPKGER	8	Unmodified	_LAGPKGER_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.24066162109375	2	414.240327	826.466101	0.28664	0.00011874	0.96978	0.00040172	1.2564	0.00052046	414.24023643031467	33.994	1.1302	33.99	33.561	34.691	-0.0045624					77	28	5	0	0	0	0.50717	1	2476	2476		84.916	5.4645	1	3599500			37108	4723	25402	25455	42771	42771					0.045926489288035555
LAGPKGER	8	Unmodified	_LAGPKGER_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.2405090332031	2	414.240327	826.466101	-0.3549	-0.00014701	0.15524	6.4305E-05	-0.19967	-8.271E-05	414.2404460075316	34.045	1.2056	33.838	33.24	34.446	-0.20696					92	30	5	0	0	0	0.56592	1	2485	2485		79.451	0	1	2618200			37109	4723	25402	25455	42772	42772					0.045926489288035555
LAGPKGER	8	Unmodified	_LAGPKGER_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.24053955078125	2	414.240327	826.466101	-0.87229	-0.00036134	1.1407	0.00047253	0.26842	0.00011119	414.24066351254584	34.026	1.7	33.85	33.146	34.846	-0.17557					74	42	4	0	0	0	0.62178	1	2453	2453		74.255	2.3776	1	2237200			37110	4723	25402	25455	42773	42773					0.045926489288035555
LAGPLQKC	8	Unmodified	_LAGPLQKC_					0	0	0		nc|ENSG00000003137|Q9NR63-3|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2126159667969	2	415.233656	828.452759	-0.057772	-2.3989E-05	-3.2237	-0.0013386	-3.2815	-0.0013626	415.22984067971777	28.027	0.60223	28.027	27.804	28.406	0					25	14	3	0	0	0	0.027866	1	1595	1595		8.8223	0	1	124580			37111	18026	25403	25456	42774	42774					0.03167074825205418
LAGPLQRSLP	10	Unmodified	_LAGPLQRSLP_					0	0	0			REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2791748046875	2	526.316566	1050.61858	-1.7907	-0.00094245	1.1253	0.00059226	-0.66537	-0.00035019	526.3170668892844	44.147	0.57121	44.147	43.948	44.519	0					24	16	2	0	0	0	0.03519	1	4168	4168		40.573	0	1	405250	+		37112	33736	25404	25457	42775	42775					0.09529424605557324
LAGPRHRNA	9	Unmodified	_LAGPRHRNA_					0	0	0			REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2834777832031	2	496.280849	990.547145	-1.041	-0.00051665	2.9169	0.0014476	1.8758	0.00093094	496.2818655014959	69.086	0.54012	68.825	68.586	69.126	-0.26165					28	12	3	0	0	0	0.024466	1	8020	8020		7.1934	0	1	428230	+		37113	36897	25405	25458	42776	42776					0.05149349691544103
LAGPSDKAL	9	Unmodified	_LAGPSDKAL_					0	0	0		nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1;nc|ENSG00000068028|Q9NS23-3|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.2474060058594	2	436.247818	870.481082	-0.43006	-0.00018761	-0.47564	-0.0002075	-0.9057	-0.00039511	436.24751330056387	35.314	1.9258	35.314	34.408	36.334	0					138	51	4	0	0	0	0.25032	1	2730	2730		82.305	2.854	1	12416000			37114	1375	25406	25459	42777	42777					0.04066096006135922
LAGPSNRL	8	Unmodified	_LAGPSNRL_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.2406005859375	2	414.240327	826.466101	-0.098351	-4.0741E-05	-0.046299	-1.9179E-05	-0.14465	-5.992E-05	414.24036993364	34.115	1.3413	33.891	33.321	34.662	-0.22412					88	33	5	0	0	0	0.6536	1	2479	2479		71.296	1.6681	1	2523900	+		37115	20508	25407	25460	42778	42778					0.045926489288035555
LAGPVHSCPR	10	Unmodified	_LAGPVHSCPR_					0	0	0			REV__ENST00000489181.5_1_3:9944520-9950978:+|nuORF	REV__ENST00000489181.5_1_3:9944520-9950978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.3238525390625	2	518.771468	1035.52838	-0.36344	-0.00018854	0.61605	0.00031959	0.25261	0.00013105	519.2723260882632	41.565	0.46085	41.588	41.464	41.925	0.023006					19	12	2	0	0	0	0.03519	1	3677	3677		27.882	7.4004	1	184450	+		37116	33661	25408	25461	42779	42779					0.01204052005482481
LAGQIDTQ	8	Unmodified	_LAGQIDTQ_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.2590026855469	2	423.2218	844.429047	2.0873	0.00088338	-0.81946	-0.00034681	1.2678	0.00053657	423.2214275047655	23.493	0.36139	23.302	23.167	23.529	-0.19117					12	8	2	0	0	0	0.027866	1	937	937		16.473	0	1	54538	+		37117	28458	25409	25462	42780	42780					0.0006093259237331949
LAGQLLIR	8	Unmodified	_LAGQLLIR_					0	0	0		ENST00000461176.1_1_7:100224226-100225153:-|nuORF;ENST00000465294.5_1_7:100218482-100225153:-|nuORF;nc|ENSG00000106327|Q9UP52-2|TFR2;ENST00000476304.5_1_7:100218482-100231271:-|nuORF;nc|ENSG00000106327|Q9UP52-3|TFR2;ENSG00000106327|ENST00000223051|TFR2	ENST00000461176.1_1_7:100224226-100225153:-|nuORF	ENST00000461176.1_1_7:100224226-100225153:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.756103515625	2	442.28982	882.565087	-0.49196	-0.00021759	0.5812	0.00025706	0.089239	3.9469E-05	442.2899223426553	44.834	0.82303	44.834	44.587	45.41	0					44	23	3	0	0	0	0.027866	1	4367	4367		33.516	17.042	1	426860			37118	2777	25410	25463	42781	42781					0.11910671893690505
LAGQLLIR	8	Unmodified	_LAGQLLIR_					0	0	0		ENST00000461176.1_1_7:100224226-100225153:-|nuORF;ENST00000465294.5_1_7:100218482-100225153:-|nuORF;nc|ENSG00000106327|Q9UP52-2|TFR2;ENST00000476304.5_1_7:100218482-100231271:-|nuORF;nc|ENSG00000106327|Q9UP52-3|TFR2;ENSG00000106327|ENST00000223051|TFR2	ENST00000461176.1_1_7:100224226-100225153:-|nuORF	ENST00000461176.1_1_7:100224226-100225153:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.28982	882.565087	-0.601	-0.00026582	0.86312	0.00038175	0.26211	0.00011593	442.29003864535105	45.052	0.82111	44.903	44.628	45.449	-0.1488	0.0045462	0.0002726	NaN	25.45	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544470			37119	2777	25410	25463							0.11910671893690505
LAGQMKSH	8	Unmodified	_LAGQMKSH_					0	0	0			REV__nc|ENSG00000144395|Q8NCX0-4|CCDC150	REV__nc|ENSG00000144395|Q8NCX0-4|CCDC150	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2476501464844	2	436.226362	870.438172	-0.054565	-2.3803E-05	0.74948	0.00032694	0.69491	0.00030314	436.2261476296996	35.18	0.29615	35.224	35.085	35.381	0.044056					10	7	2	0	0	0	0.027866	1	2620	2620		57.811	0	1	49994	+		37120	24331	25411	25464	42782	42782					-0.00222997322930496
LAGQRGAPQ	9	Unmodified	_LAGQRGAPQ_					0	0	0		ENST00000258439.7_1_2:96918283-96918550:-|nuORF	ENST00000258439.7_1_2:96918283-96918550:-|nuORF	ENST00000258439.7_1_2:96918283-96918550:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.26348876953125	2	449.248683	896.482814	0.063306	2.844E-05	-0.39021	-0.0001753	-0.3269	-0.00014686	449.24756635170223	63.909	0.19659	63.681	63.585	63.782	-0.22773					7	4	2	0	0	0	0.024436	1	7245	7245		30.504	0	1	47588			37121	11423	25412	25465	42783	42783					0.030431498147549974
LAGQTRLAE	9	Unmodified	_LAGQTRLAE_					0	0	0		ENST00000311921.8_1_19:32836542-32836680:+|nuORF	ENST00000311921.8_1_19:32836542-32836680:+|nuORF	ENST00000311921.8_1_19:32836542-32836680:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7311706542969	2	479.769448	957.524344	-0.38562	-0.00018501	-0.38678	-0.00018557	-0.7724	-0.00037057	479.7689595198246	31.95	0.91692	32.019	31.327	32.244	0.068962					30	22	2	0	0	0	0.024021	1	2076	2076		32.812	0	1	348550			37122	12085	25413	25466	42784	42784					0.04388285783409174
LAGQWETP	8	Unmodified	_LAGQWETP_					0	0	0			REV__nc|ENSG00000090372|Q9NRL3-2|STRN4	REV__nc|ENSG00000090372|Q9NRL3-2|STRN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.77947998046875	2	451.224342	900.434132	-0.37445	-0.00016896	-3.9981	-0.0018041	-4.3726	-0.001973	451.22243255909694	25.944	0.59798	25.921	25.526	26.124	-0.023087					25	13	3	0	0	0	0.027866	1	1270	1270		24.203	1.1603	1	112220	+		37123	36502	25414	25467	42785	42785					-0.020067635450004673
LAGRACSFL	9	Carbamidomethyl (C)	_LAGRAC(Carbamidomethyl (C))SFL_	LAGRAC(1)SFL		LAGRAC(59)SFL		0	1	0		ENST00000357590.9_2_11:118900045-118901265:-|nuORF;ENST00000330775.9_2_11:118900045-118901566:-|nuORF;ENST00000534384.1_1_11:118900045-118900639:-|nuORF;ENST00000525102.5_1_11:118900045-118901045:-|nuORF;ENST00000532085.1_1_11:118900045-118900432:-|nuORF	ENST00000357590.9_2_11:118900045-118901265:-|nuORF	ENST00000357590.9_2_11:118900045-118901265:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7587585449219	2	497.760569	993.506586	-0.24948	-0.00012418	-3.2549	-0.0016201	-3.5043	-0.0017443	497.7588510545914	60.384	1.5396	60.384	60.027	61.566	0					101	40	4	0	0	0	0.50848	1	6957	6957		58.782	12.016	1	6684900			37124	12330	25415	25468	42786	42786	170				0.009572472569175261
LAGRCSRW	8	Unmodified	_LAGRCSRW_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2607421875	2	474.745254	947.475954	0.57723	0.00027404	-1.7953	-0.00085233	-1.2181	-0.00057829	474.7441787300481	42.852	1.4927	42.878	42.605	44.097	0.026012					71	40	3	0	0	0	0.027866	1	3974	3974		60.294	4.7898	1	1589100	+		37125	20465	25416	25469	42787	42787					0.00011513662525430846
LAGRERLL	8	Unmodified	_LAGRERLL_					0	0	0		ENST00000533871.6_2_11:133801972-133806022:-|nuORF	ENST00000533871.6_2_11:133801972-133806022:-|nuORF	ENST00000533871.6_2_11:133801972-133806022:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.230224609375	2	464.290351	926.566149	0.64717	0.00030048	-1.5153	-0.00070354	-0.86814	-0.00040307	464.2897256794066	37.274	0.37556	37.306	37.112	37.487	0.032269					12	9	2	0	0	0	0.027866	1	2974	2974		44.531	14.69	1	45498			37126	16321	25417	25470	42788	42788					0.09992886262602951
LAGRGAEPP	9	Unmodified	_LAGRGAEPP_					0	0	0		chr12:56784133-56784853|342|14.69|0.25|5.86|+|2|TE_info:SVA_D,SVA_D_dup973,SVA,Retroposon,donor,-,56782661,56784133|None,HSD17B6|6;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|79|3|anti-sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|49|1|anti-sense	chr12:56784133-56784853|342|14.69|0.25|5.86|+|2|TE_info:SVA_D,SVA_D_dup973,SVA,Retroposon,donor,-,56782661,56784133|None,HSD17B6|6	chr12:56784133-56784853|342|14.69|0.25|5.86|+|2|TE_info:SVA_D,SVA_D_dup973,SVA,Retroposon,donor,-,56782661,56784133|None,HSD17B6|6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.23779296875	2	434.237784	866.461016	-0.46118	-0.00020026	0.67293	0.00029221	0.21175	9.1949E-05	434.23807342612656	34.298	1.8944	34.349	33.571	35.465	0.050255					118	48	4	0	0	0	0.33245	1	2495	2495		71.296	4.8664	1	6995600			37127	325	25418	25471	42789	42789					0.022443450661853603
LAGRGRARGAA	11	Unmodified	_LAGRGRARGAA_					0	0	0			REV__ENST00000566303.5_1_15:79060537-79082096:-|nuORF	REV__ENST00000566303.5_1_15:79060537-79082096:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.274658203125	2	528.312681	1054.61081	-0.13173	-6.9596E-05	2.3594	0.0012465	2.2277	0.0011769	528.3139172458461	46.69	0.74986	46.742	46.274	47.024	0.051395					65	20	5	0	0	0	0.024783	1	4507	4507		42.396	14.514	1	5871600	+		37128	35298	25419	25472	42790	42790					0.08568710128656676
LAGRHFNL	8	Unmodified	_LAGRHFNL_					0	0	0		nc|ENSG00000092330|Q9BSI4-2|TINF2;ENSG00000092330|ENST00000267415|TINF2	nc|ENSG00000092330|Q9BSI4-2|TINF2	nc|ENSG00000092330|Q9BSI4-2|TINF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2772216796875	2	464.261594	926.508634	0.38378	0.00017817	-0.83049	-0.00038556	-0.44671	-0.00020739	464.2609920186715	46.745	0.4786	46.796	46.509	46.987	0.051399					15	12	2	0	0	0	0.027866	1	4612	4612		18.324	0	1	151530			37129	1988	25420	25473	42791	42791					0.042440440570203464
LAGRLGQLP	9	Unmodified	_LAGRLGQLP_					0	0	0			REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.7845458984375	2	462.784902	923.55525	-0.2302	-0.00010654	-0.032676	-1.5122E-05	-0.26288	-0.00012166	462.7848338895305	43.425	1.1632	43.312	42.997	44.161	-0.11253					79	31	4	0	0	0	0.4855	1	3977	3977		60.294	0	1	9235900	+		37130	33624	25421	25474	42792	42792					0.09041483888313451
LAGRMPAPAL	10	Unmodified	_LAGRMPAPAL_					0	0	0		ENST00000525088.5_1_11:67202187-67202637:+|nuORF	ENST00000525088.5_1_11:67202187-67202637:+|nuORF	ENST00000525088.5_1_11:67202187-67202637:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.788330078125	2	498.786587	995.558621	-0.42547	-0.00021222	3.5558	0.0017736	3.1303	0.0015614	498.7883940741003	21.611	1.2857	21.521	21.158	22.444	-0.090092					64	26	4	0	0	0	0.941	1	674	674		51.335	3.6781	1	2493100			37131	16082	25422	25475	42793	42793					0.06066410670666755
LAGRRWSL	8	Unmodified	_LAGRRWSL_					0	0	0			REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2897033691406	2	479.782693	957.550834	-0.20582	-9.8747E-05	-1.1457	-0.00054967	-1.3515	-0.00064841	479.78180613518873	52.304	0.66955	52.396	52.04	52.71	0.091938					27	16	2	0	0	0	0.027866	1	5574	5574		24.203	1.1603	1	659260	+		37132	28690	25423	25476	42794	42794					0.0703601946541994
LAGRRWSL	8	Unmodified	_LAGRRWSL_					0	0	0			REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7923583984375	2	479.782693	957.550834	-0.097523	-4.679E-05	-0.75615	-0.00036279	-0.85367	-0.00040958	479.7819613529351	64.103	0.67408	63.91	63.677	64.351	-0.19244					36	16	4	0	0	0	0.027866	1	7265	7265		3.9852	0	1	565380	+		37133	28690	25423	25476	42795	42795					0.0703601946541994
LAGRSLGGVL	10	Unmodified	_LAGRSLGGVL_					0	0	0		ENST00000528011.1_1_11:838377-838470:+|nuORF	ENST00000528011.1_1_11:838377-838470:+|nuORF	ENST00000528011.1_1_11:838377-838470:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7900085449219	2	471.790184	941.565815	-0.2047	-9.6575E-05	-0.54393	-0.00025662	-0.74863	-0.0003532	471.7899415927755	47.76	1.308	47.819	47.554	48.862	0.059097					114	37	5	0	0	0	0.57594	1	4775	4775		79.713	4.6693	1	46020000			37134	16174	25424	25477	42796	42796					0.0926946654275298
LAGSFGLLPP	10	Unmodified	_LAGSFGLLPP_					0	0	0			REV__ENSG00000215612|ENST00000400677|HMX1	REV__ENSG00000215612|ENST00000400677|HMX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.748046875	2	486.28166	970.548768	-0.34443	-0.00016749	1.5114	0.00073499	1.167	0.0005675	486.28175228160734	70.122	0.70446	69.855	69.493	70.198	-0.26725					43	16	3	0	0	0	0.03519	1	8142	8142		53.351	12.573	1	394660	+		37135	28809	25425	25478	42797	42797					0.06231545936952898
LAGSVFLL	8	Unmodified	_LAGSVFLL_					0	0	0			REV__ENST00000526477.5_1_11:34073295-34074390:+|nuORF	REV__ENST00000526477.5_1_11:34073295-34074390:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.88043212890625	2	410.252372	818.49019	-0.21731	-8.9153E-05	-4.2749	-0.0017538	-4.4922	-0.0018429	410.250390214676	33.192	0.64437	33.198	32.928	33.572	0.0066261					41	17	3	0	0	0	0.027866	1	2348	2348		14.664	3.7985	1	1102400	+		37136	34445	25426	25479	42798	42798					0.07368489362477249
LAGVAGWPL	9	Unmodified	_LAGVAGWPL_					0	0	0		ENST00000537045.5_1_22:19023939-19024314:-|nuORF	ENST00000537045.5_1_22:19023939-19024314:-|nuORF	ENST00000537045.5_1_22:19023939-19024314:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.8931579589844	2	442.255446	882.496338	-0.51463	-0.0002276	-3.4671	-0.0015334	-3.9818	-0.001761	442.25382398642574	35.127	0.59085	34.914	34.642	35.233	-0.21246					22	14	2	0	0	0	0.024289	1	2634	2634		29.842	0	1	154550			37137	16369	25427	25480	42799	42799					0.05039007593984479
LAGVARFPGA	10	Unmodified	_LAGVARFPGA_					0	0	0		ENST00000495146.5_1_2:26256976-26257036:+|nuORF	ENST00000495146.5_1_2:26256976-26257036:+|nuORF	ENST00000495146.5_1_2:26256976-26257036:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	479.777077	957.5396	-0.72293	-0.00034684	-0.82769	-0.00039711	-1.5506	-0.00074395	479.7773793441763	28.332	0.63157	28.163	27.966	28.598	-0.16897					30	14	3	0	0	0	0.03519	1	1693	1693		11.511	0	1	107400			37138	15543	25428	25481	42800	42800					0.05913197371273782
LAGVARFPGA	10	Unmodified	_LAGVARFPGA_					0	0	0		ENST00000495146.5_1_2:26256976-26257036:+|nuORF	ENST00000495146.5_1_2:26256976-26257036:+|nuORF	ENST00000495146.5_1_2:26256976-26257036:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.777077	957.5396	-0.73168	-0.00035104	-0.85926	-0.00041225	-1.5909	-0.0007633	479.7772573990037	28.498	0.66009	28.252	27.961	28.621	-0.24524	0.013344	-0.0005921	NaN	11.511	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83957			37139	15543	25428	25481							0.05913197371273782
LAGVARFPGA	10	Unmodified	_LAGVARFPGA_					0	0	0		ENST00000495146.5_1_2:26256976-26257036:+|nuORF	ENST00000495146.5_1_2:26256976-26257036:+|nuORF	ENST00000495146.5_1_2:26256976-26257036:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.777077	957.5396	-0.29696	-0.00014248	0.1263	6.0597E-05	-0.17066	-8.1879E-05	479.77695848489594	28.454	0.48414	28.302	28	28.484	-0.15195	0.062684	0.00035361	NaN	11.511	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139800			37140	15543	25428	25481							0.05913197371273782
LAGVCPLDCEA	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LAGVCPLDCEA_					1	0	0		ENST00000449739.6_1_4:73923833-73935428:-|nuORF	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.7551879882812	2	566.754292	1131.49403	0.14383	8.1514E-05	-0.029404	-1.6665E-05	0.11442	6.4849E-05	566.7540782504252	50.431	1.0461	50.326	50.011	51.057	-0.10558					54	27	3	0	0	0	0.57755	1	5137	5137		71.296	9.1883	1	3395800			37141	14504	25429	25482	42801	42801					-0.06645576988285029
LAGVGAIVQ	9	Unmodified	_LAGVGAIVQ_					0	0	0			REV__nc|ENSG00000185989|Q14644-2|RASA3	REV__nc|ENSG00000185989|Q14644-2|RASA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.19525146484375	2	414.252903	826.491253	0.19329	8.0071E-05	3.7773	0.0015647	3.9706	0.0016448	414.25402249509625	39.316	0.52782	39.09	38.983	39.511	-0.2257					18	13	2	0	0	0	0.024412	1	3360	3360		17.365	0	1	297490	+		37142	27820	25430	25483	42802	42802					0.07106703731369635
LAGVIVVVIL	10	Unmodified	_LAGVIVVVIL_					0	0	0			REV__ENSG00000168484|ENST00000679463|SFTPC	REV__ENSG00000168484|ENST00000679463|SFTPC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.32379150390625	2	498.346803	994.679054	-0.44485	-0.00022169	-0.27475	-0.00013692	-0.71961	-0.00035861	498.3466223003903	75.776	0.60973	75.531	75.339	75.949	-0.24455					28	16	2	0	0	0	0.03519	1	9325	9325		44.531	2.0566	1	387560	+		37143	26263	25431	25484	42803	42803					0.18150141935939246
LAGVLWLAR	9	Unmodified	_LAGVLWLAR_					0	0	0			REV__ISLR2|p.W11G|1|0.34|ENSG00000167178|chr15:74132785-74132785|T/G|missense_variant	REV__ISLR2|p.W11G|1|0.34|ENSG00000167178|chr15:74132785-74132785|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.8318786621094	2	499.810919	997.607286	-0.86043	-0.00043005	-3.0879	-0.0015434	-3.9483	-0.0019734	499.80925818310743	44.341	0.49838	44.341	44.089	44.587	0					28	14	3	0	0	0	0.024443	1	4233	4233		7.6903	0	1	570730	+		37144	36155	25432	25485	42804	42804					0.10838647302068694
LAGVRKAAR	9	Unmodified	_LAGVRKAAR_					0	0	0			REV__ENST00000356853.9_1_2:220022944-220025484:-|nuORF	REV__ENST00000356853.9_1_2:220022944-220025484:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	471.3038635253906	2	471.303793	940.593033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.01	1	17.803	17.303	18.303	-0.20669								0	0	0	0.60629	1	243	243		38.806	5.2906	1		+		37145	30803	25433	25486	42805	42805					0.12035994873781419
LAGVSPAGW	9	Unmodified	_LAGVSPAGW_					0	0	0		ENST00000507881.5_1_5:176873613-176881926:+|nuORF	ENST00000507881.5_1_5:176873613-176881926:+|nuORF	ENST00000507881.5_1_5:176873613-176881926:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.7488708496094	2	429.229428	856.444303	-0.8636	-0.00037068	-0.87822	-0.00037696	-1.7418	-0.00074764	429.22903379960815	25.359	0.51904	25.325	25.037	25.556	-0.034395					20	12	2	0	0	0	0.024386	1	1198	1198		25.45	0	1	535310			37146	15772	25434	25487	42806	42806					0.010338441802332454
LAGVVTEIL	9	Unmodified	_LAGVVTEIL_					0	0	0			REV__ENST00000568633.1_1_16:88741538-88741892:+|nuORF	REV__ENST00000568633.1_1_16:88741538-88741892:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.75103759765625	2	457.781493	913.548434	-0.43388	-0.00019862	-2.4918	-0.0011407	-2.9257	-0.0013393	457.7801590759381	29.772	0.80729	29.78	29.356	30.164	0.0086708					39	19	3	0	0	0	0.024325	1	1853	1853		24.203	3.2558	1	403700	+		37147	35349	25435	25488	42807	42807					0.08820126217085544
LAGWCLPGL	9	Unmodified	_LAGWCLPGL_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7775573730469	2	465.249306	928.484059	0.11368	5.2891E-05	-2.2663	-0.0010544	-2.1526	-0.0010015	465.248245067306	49.846	0.5624	49.695	49.292	49.854	-0.1512					22	14	2	0	0	0	0.024289	1	5097	5097		39.021	13.447	1	133610			37148	5972	25436	25489	42808	42808					0.016956478592987878
LAGWPIPHTL	10	Unmodified	_LAGWPIPHTL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.2719116210938	2	552.813659	1103.61277	-0.30416	-0.00016814	3.0226	0.0016709	2.7185	0.0015028	552.813530547424	77.398	0.88387	77.412	77.145	78.029	0.013504					25	20	2	0	0	0	0.03519	1	9516	9516		20.947	1.587	1	189140	+		37149	34688	25437	25490	42809	42809					0.06510326093894037
LAGYHQENL	9	Unmodified	_LAGYHQENL_					0	0	0			REV__ENST00000402426.2_1_6:73765044-73765512:+|nuORF	REV__ENST00000402426.2_1_6:73765044-73765512:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7950439453125	2	522.759081	1043.50361	-0.64703	-0.00033824	-1.312	-0.00068587	-1.9591	-0.0010241	522.7588567064904	68.326	0.72795	68.326	68.026	68.754	0					30	18	2	0	0	0	0.023417	1	8161	8161		49.442	0	1	341180	+		37150	31869	25438	25491	42810	42810					-0.01640304596230635
LAHHHHAH	8	Unmodified	_LAHHHHAH_					0	0	0			REV__ENST00000416792.1_3_19:55944525-55949973:-|nuORF	REV__ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2843017578125	2	480.238984	958.463416	-0.37867	-0.00018185	-2.9619	-0.0014224	-3.3405	-0.0016043	480.23925179768037	75.707	0.25483	75.707	75.551	75.806	0					9	6	2	0	0	0	0.027866	1	9304	9304		16.705	2.0409	1	46731	+		37151	27990	25439	25492	42811	42811					-0.01747761685498972
LAHICLVTP	9	Unmodified	_LAHICLVTP_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.3123779296875	2	483.775688	965.536823	0.053306	2.5788E-05	1.9728	0.00095441	2.0261	0.00098019	483.77883843592065	99.324	0.17806	99.335	99.268	99.446	0.010231					5	3	2	0	0	0	0.024183	1	12671	12671		40.573	0	1	16966			37152	6294	25440	25493	42812	42812					0.05267605922108487
LAHLRTSW	8	Unmodified	_LAHLRTSW_					0	0	0			REV__ENST00000270139.7_1_21:34730136-34730586:+|nuORF	REV__ENST00000270139.7_1_21:34730136-34730586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2726745605469	2	492.274701	982.534849	-0.25839	-0.0001272	-4.3274	-0.0021303	-4.5858	-0.0022575	492.2727823729576	23.673	1.1973	23.673	23.321	24.518	0					87	27	6	0	0	0	0.93274	1	998	998		47.916	3.7988	1	13782000	+		37153	29796	25441	25494	42813	42813					0.04288313228505558
LAHSISASI	9	Unmodified	_LAHSISASI_					0	0	0		ENST00000451644.5_1_2:12246998-12271622:+|nuORF	ENST00000451644.5_1_2:12246998-12271622:+|nuORF	ENST00000451644.5_1_2:12246998-12271622:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.74072265625	2	449.753267	897.491981	-0.81512	-0.0003666	-4.3115	-0.0019391	-5.1266	-0.0023057	449.75050151581877	30.838	0.45298	30.838	30.508	30.961	0					15	10	2	0	0	0	0.022643	1	1970	1970		76.847	2.8719	1	65567			37154	14524	25442	25495	42814	42814					0.03913498380427427
LAHVRTLEM	9	Unmodified	_LAHVRTLEM_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2963256835938	2	535.294776	1068.575	-0.35562	-0.00019036	4.1997	0.0022481	3.8441	0.0020577	535.2968901723351	79.648	1.2514	79.498	79.195	80.446	-0.15051					89	29	5	0	0	0	0.50848	1	9501	9501		58.782	0.97068	1	4361500			37155	6022	25443	25496	42815	42815					0.043454918367842765
LAIARAWQTKR	11	Unmodified	_LAIARAWQTKR_					0	0	0			REV__ENST00000254528.3_1_18:2914928-2915177:+|nuORF	REV__ENST00000254528.3_1_18:2914928-2915177:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.5300598144531	3	438.598206	1312.77279	1.4037	0.00061567	3.4617	0.0015183	4.8654	0.002134	438.5998814717651	19.842	0.64294	19.608	19.176	19.819	-0.23345					16	12	2	0	0	0	0.024823	1	427	427		15.921	0	1	19699	+		37156	29529	25444	25497	42816	42816					0.12891254090914117
LAICRPLRA	9	Unmodified	_LAICRPLRA_					0	0	0		nc|ENSG00000102539|O43193-2|MLNR;ENSG00000102539|ENST00000218721|MLNR	nc|ENSG00000102539|O43193-2|MLNR;ENSG00000102539|ENST00000218721|MLNR	nc|ENSG00000102539|O43193-2|MLNR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2897033691406	2	506.807854	1011.60115	-0.17474	-8.8558E-05	4.0863	0.002071	3.9116	0.0019824	506.8095782553211	44.141	0.74043	44.178	43.635	44.375	0.0369					35	19	3	0	0	0	0.024	1	4051	4051		65.803	14.468	1	1322000			37157	18137;2413	25445	25498	42817	42817					0.09581805798893583
LAIDKVGFL	9	Unmodified	_LAIDKVGFL_					0	0	0			REV__ENSG00000277531|ENST00000617053|PNMA8C	REV__ENSG00000277531|ENST00000617053|PNMA8C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2992248535156	2	488.29731	974.580068	0.30204	0.00014749	-1.0596	-0.00051742	-0.7576	-0.00036994	488.2966471978305	97.982	0.92247	97.992	97.684	98.607	0.010231					34	21	2	0	0	0	0.55828	1	12498	12498		55.504	7.5886	1	258200	+		37158	29206	25446	25499	42818	42818					0.09176118971060987
LAIDSANEI	9	Unmodified	_LAIDSANEI_					0	0	0			REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2464294433594	2	473.248015	944.481476	-0.3824	-0.00018097	-0.33912	-0.00016049	-0.72153	-0.00034146	473.24776307690405	50.857	1.1683	50.944	50.615	51.783	0.087006					62	32	3	0	0	0	0.53979	1	5280	5280		56.721	1.2168	1	3882100	+		37159	25087	25447	25500	42819	42819					0.007014709353256876
LAIIDLSLR	9	Unmodified	_LAIIDLSLR_					0	0	0		ENST00000395127.6_1_2:37376215-37376260:-|nuORF	ENST00000395127.6_1_2:37376215-37376260:-|nuORF	ENST00000395127.6_1_2:37376215-37376260:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3194885253906	2	507.321317	1012.62808	0.66871	0.00033925	-3.7402	-0.0018975	-3.0715	-0.0015582	507.3191905600104	20.666	1.1245	20.734	20.464	21.589	0.068901					40	22	4	0	0	0	0.90698	1	532	532		31.955	1.4512	1	291750			37160	13504	25448	25501	42820	42820					0.12227192891089089
LAIKQSATI	9	Unmodified	_LAIKQSATI_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.7918701171875	2	472.792392	943.570232	0.33101	0.0001565	-0.70778	-0.00033463	-0.37677	-0.00017814	472.7920197722938	18.492	0.84065	18.288	18.064	18.904	-0.20371					44	16	5	0	0	0	0.23085	2	303	303;315		84.916	7.6702	1	1830100	+		37161	22639	25449	25502	42821;42822	42821					0.0961893096566655
LAIKQSATI	9	Unmodified	_LAIKQSATI_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.792392	943.570232	2.8582	0.0013513	-2.8671	-0.0013556	-0.0089689	-4.2404E-06	472.7909088067637	18.492	0.24999	18.249	18.124	18.374	-0.24256	-0.036805	-0.0017298	NaN	84.916	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22007	+		37162	22639	25449	25502							0.0961893096566655
LAIKRTTE	8	Unmodified	_LAIKRTTE_					0	0	0			REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1	REV__nc|ENSG00000101938|Q9BU40-3|CHRDL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7494812011719	2	466.282192	930.549831	-1.4412	-0.00067202	-1.0346	-0.00048241	-2.4758	-0.0011544	466.2815260807319	29.475	0.42541	29.475	29.186	29.611	0					28	10	4	0	0	0	0.027866	1	1829	1829		24.203	6.8378	1	7453400	+		37163	21266	25450	25503	42823	42823					0.08177760305841275
LAILDAETLLK	11	Unmodified	_LAILDAETLLK_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.9153137207031	3	400.579706	1198.71729	0.22062	8.8377E-05	2.048	0.00082037	2.2686	0.00090875	400.5803938216271	111.35	0.20173	111.2	111.11	111.31	-0.1469					15	7	3	0	0	0	1.0501	1	13582	13582		25.068	5.0373	1	322990	+		37164	27102	25451	25504	42824	42824					0.1258798305993878
LAILDAETLLK	11	Unmodified	_LAILDAETLLK_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.9153137207031	3	400.579706	1198.71729	0.22062	8.8377E-05	2.048	0.00082037	2.2686	0.00090875	400.5803938216271	111.35	0.20173	111.2	111.11	111.31	-0.1469					15	7	3	0	0	0	0.024723	1	13582	13582		25.068	14.481	1	322990	+		37165	27102	25451	25504	42825	42825					0.1258798305993878
LAINQISTQ	9	Unmodified	_LAINQISTQ_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MSMS	OPSCC_39_ClassI_Rep-3	3	494.2771301269531	2	494.277106	986.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.569	1	17.629	17.129	18.129	0.06036								0	0	0	0.6703	1	150	150		26.693	2.4902	1				37166	3956	25452	25505	42826	42826					0.04585152580614249
LAIPRRVKPI	10	Unmodified	_LAIPRRVKPI_					0	0	0		ENST00000064778.8_1_11:73115379-73115817:-|nuORF	ENST00000064778.8_1_11:73115379-73115817:-|nuORF	ENST00000064778.8_1_11:73115379-73115817:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.8140869140625	2	581.892775	1161.771	0.35022	0.00020379	1.399	0.00081405	1.7492	0.0010178	582.395241349801	20.14	0.13895	19.942	19.851	19.99	-0.19816					4	2	2	0	0	0	0.03519	1	501	501		27.882	16.371	1	14663			37167	11107	25453	25506	42827	42827					0.19658245072969294
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.27197265625	2	475.271293	948.528032	0.13554	6.4417E-05	0.073819	3.5084E-05	0.20936	9.9501E-05	475.2711987940771	83.629	0.68994	83.629	83.351	84.041	0					44	15	4	0	0	0	0.067814	1	10470	10470		122.18	14.088	1	813260	+		37168	32558	25454	25507	42828	42828					0.05170955557275647
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.27178955078125	2	475.271293	948.528032	-0.0028677	-1.3629E-06	0.18088	8.5969E-05	0.17802	8.4606E-05	475.27126602014704	83.668	0.68677	83.578	83.3	83.987	-0.090454					38	15	3	0	0	0	0.047345	1	10435	10435		129.68	0	1	850630	+		37169	32558	25454	25507	42829	42829					0.05170955557275647
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	475.271293	948.528032	0.13554	6.4417E-05	0.073819	3.5084E-05	0.20936	9.9501E-05	475.2711987940771	83.629	0.68994	83.629	83.351	84.041	0	0.12646	-2.9676E-06	NaN	129.68	44	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	813260	+		37170	32558	25454	25507							0.05170955557275647
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	475.271293	948.528032	-0.0028677	-1.3629E-06	0.18088	8.5969E-05	0.17802	8.4606E-05	475.27126602014704	83.668	0.68677	83.578	83.3	83.987	-0.090454	0.075619	9.8801E-05	NaN	129.68	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850630	+		37171	32558	25454	25507							0.05170955557275647
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.271293	948.528032	-0.51662	-0.00024554	0.55333	0.00026298	0.036705	1.7445E-05	475.27139496291625	83.574	0.68844	83.6	83.3	83.988	0.02655	0.098039	0.00045282	NaN	129.68	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	820580	+		37172	32558	25454	25507							0.05170955557275647
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.271293	948.528032	0.93818	0.00044589	-0.81331	-0.00038654	0.12487	5.9347E-05	475.2708337581211	83.606	0.46367	83.395	83.178	83.641	-0.21159	-0.10751	-0.00084622	NaN	129.68	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187310	+		37173	32558	25454	25507							0.05170955557275647
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.271293	948.528032	0.55157	0.00026215	-0.44547	-0.00021172	0.1061	5.0428E-05	475.2710024784975	83.545	0.41299	83.376	83.162	83.575	-0.16915	-0.12602	-0.00049657	NaN	129.68	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139380	+		37174	32558	25454	25507							0.05170955557275647
LAIQGTFSL	9	Unmodified	_LAIQGTFSL_					0	0	0			REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	REV__ENST00000442329.6_1_2:179388119-179388215:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.271293	948.528032	0.14521	6.9012E-05	0.34181	0.00016245	0.48701	0.00023146	475.27142898273655	83.574	0.63254	83.436	83.168	83.801	-0.1386	-0.066593	0.00025177	NaN	129.68	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229210	+		37175	32558	25454	25507							0.05170955557275647
LAIQVRKP	8	Unmodified	_LAIQVRKP_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.7845458984375	2	462.803094	923.591636	-0.17533	-8.1143E-05	-2.2164	-0.0010258	-2.3917	-0.0011069	462.80211065164934	43.383	0.17632	43.271	43.145	43.322	-0.11253					6	4	2	0	0	0	0.027866	1	3977	3977		68.485	0	1	37491	+		37176	21946	25455	25508	42830	42830					0.12678360785037057
LAIRDTATY	9	Unmodified	_LAIRDTATY_					0	0	0		nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6	nc|ENSG00000198689|Q92581-3|SLC9A6	nc|ENSG00000198689|Q92581-3|SLC9A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.8028564453125	2	512.277106	1022.53966	-0.61907	-0.00031714	1.2958	0.00066379	0.67669	0.00034665	512.2774704155389	52.256	0.89458	52.348	51.894	52.788	0.091938					35	22	2	0	0	0	0.024354	1	5536	5536		38.806	14.603	1	117200			37177	10170	25456	25509	42831	42831					0.029291525806002028
LAISAASLIL	10	Unmodified	_LAISAASLIL_					0	0	0			REV__nc|ENSG00000148459|Q5T2R2-2|PDSS1	REV__nc|ENSG00000148459|Q5T2R2-2|PDSS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.3087158203125	2	486.310418	970.606283	-0.53212	-0.00025877	-2.7223	-0.0013239	-3.2544	-0.0015827	486.3090057572208	20.571	0.91579	20.467	20.227	21.143	-0.10477					43	18	4	0	0	0	1.0004	1	538	538		45.952	7.1458	1	991990	+		37178	24618	25457	25510	42832	42832					0.11980388142512766
LAISPVLGL	9	Unmodified	_LAISPVLGL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7883605957031	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	0.88411	3	3625	3625;3637;3650		33.516	0	1	35892000			37179	1795	25458	25511	42833;42834;42835	42833					0.11308733942325944
LAISPVLGL	9	Unmodified	_LAISPVLGL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.78814697265625	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	0.88411	2	3628	3568;3628		33.516	0	1	39693000			37180	1795	25458	25511	42836;42837	42837					0.11308733942325944
LAISPVLGL	9	Unmodified	_LAISPVLGL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7880859375	2	441.786579	881.558604	0.5436	0.00024016	2.4419	0.0010788	2.9855	0.001319	441.7875773536456	43.102	2.1581	43.133	42.939	45.097	0.030827					145	60	5	0	0	0	0.75282	1	3940	3940		42.474	8.9589	1	24747000			37181	1795	25458	25511	42838	42838					0.11308733942325944
LAISPVLGL	9	Unmodified	_LAISPVLGL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7877197265625	2	441.786579	881.558604	-0.34704	-0.00015332	3.3795	0.001493	3.0324	0.0013397	441.78799059467195	43.095	2.3661	42.982	42.775	45.141	-0.11253					131	63	5	0	0	0	0.78069	1	3958	3958		40.573	1.7665	1	16234000			37182	1795	25458	25511	42839	42839					0.11308733942325944
LAISRQLDP	9	Unmodified	_LAISRQLDP_					0	0	0		ENST00000381482.7_1_20:2098042-2124539:+|nuORF	ENST00000381482.7_1_20:2098042-2124539:+|nuORF	ENST00000381482.7_1_20:2098042-2124539:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7924499511719	2	506.792924	1011.57129	-1.2623	-0.00063974	-0.35435	-0.00017958	-1.6167	-0.00081933	506.7928567473784	44.161	1.3823	44.161	43.765	45.147	0					125	39	6	0	0	0	0.17455	2	4225	4225;4238		94.006	13.499	1	120750000			37183	13343	25459	25512	42840;42841	42840					0.06597145334569632
LAISRQLDP	9	Unmodified	_LAISRQLDP_					0	0	0		ENST00000381482.7_1_20:2098042-2124539:+|nuORF	ENST00000381482.7_1_20:2098042-2124539:+|nuORF	ENST00000381482.7_1_20:2098042-2124539:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.79248046875	2	506.792924	1011.57129	-1.2594	-0.00063826	-0.26687	-0.00013525	-1.5263	-0.00077351	506.79291152499354	44.294	1.3029	44.149	43.781	45.083	-0.14471					125	37	6	0	0	0	0.17455	2	4231	4231;4244		94.006	3.2298	1	119450000			37184	13343	25459	25512	42842;42843	42842					0.06597145334569632
LAISRQLDP	9	Unmodified	_LAISRQLDP_					0	0	0		ENST00000381482.7_1_20:2098042-2124539:+|nuORF	ENST00000381482.7_1_20:2098042-2124539:+|nuORF	ENST00000381482.7_1_20:2098042-2124539:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.79254150390625	2	506.792924	1011.57129	-0.35557	-0.0001802	-1.1749	-0.00059544	-1.5305	-0.00077565	506.79245433045855	44.155	1.3845	44.192	43.888	45.272	0.036903					127	39	6	0	0	0	0.17455	2	4162	4162;4174		94.006	11.009	1	117970000			37185	13343	25459	25512	42844;42845	42844					0.06597145334569632
LAISTIQAL	9	Unmodified	_LAISTIQAL_					0	0	0		NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.26849365234375	2	465.286943	928.559333	-0.09552	-4.4444E-05	2.738	0.0012739	2.6425	0.0012295	465.28868404089553	66.44	0.19407	66.159	66.019	66.213	-0.28148					5	4	2	0	0	0	0.024262	1	7865	7865		57.811	3.035	1	114870			37186	5738	25460	25513	42846	42846					0.09219528591370363
LAIVPNVR	8	Unmodified	_LAIVPNVR_					0	0	0		ENSG00000121716|ENST00000609309|PILRB	ENSG00000121716|ENST00000609309|PILRB	ENSG00000121716|ENST00000609309|PILRB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2821350097656	2	441.281995	880.549437	0.12652	5.5831E-05	-0.004296	-1.8958E-06	0.12222	5.3936E-05	441.2818372946796	57.827	1.1705	57.652	57.19	58.36	-0.1749					51	31	3	0	0	0	1.0338	1	6496	6496		31.955	1.4512	1	2336700			37187	3882	25461	25514	42847	42847					0.10438385376653514
LAIVSAYIN	9	Unmodified	_LAIVSAYIN_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2;REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7328796386719	2	482.279118	962.543683	-0.04268	-2.0584E-05	0.64149	0.00030938	0.59881	0.00028879	482.27921061737715	57.167	0.46431	57.167	56.841	57.305	0					18	12	2	0	0	0	0.024457	1	6433	6433		15.642	0	1	159900	+		37188	24036;36719	25462	25515	42848	42848					0.06091242074319325
LAIVTGPAADE	11	Unmodified	_LAIVTGPAADE_					0	0	0			REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.761962890625	2	528.782222	1055.54989	-1.0048	-0.0005313	2.4984	0.0013211	1.4936	0.00078981	528.7837941158606	45.05	0.37377	44.95	44.71	45.084	-0.099449					13	9	2	0	0	0	0.024727	1	4255	4255		31.53	1.2121	1	122750	+		37189	29010	25463	25516	42849	42849					0.02433715515167023
LAIVYFCTI	9	Unmodified	_LAIVYFCTI_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;COL14A1|p.P852Hfs*5|1|0.28|ENSG00000187955|chr8:120247683-120247683|C/-|frameshift_variant;COL14A1|p.R123Kfs*25|1|0.37|ENSG00000187955|chr8:120168179-120168179|G/-|frameshift_variant	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3186645507812	2	521.785721	1041.55689	-1.5499	-0.00080871	-2.252	-0.0011751	-3.8019	-0.0019838	521.784424699248	65.057	0.57217	65.057	64.654	65.226	0					22	15	2	0	0	0	0.024325	1	7663	7663		40.573	0	1	268890			37190	9677	25464	25517	42850	42850					0.03777356862065062
LAIVYFCTI	9	Unmodified	_LAIVYFCTI_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;COL14A1|p.P852Hfs*5|1|0.28|ENSG00000187955|chr8:120247683-120247683|C/-|frameshift_variant;COL14A1|p.R123Kfs*25|1|0.37|ENSG00000187955|chr8:120168179-120168179|G/-|frameshift_variant	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3186645507812	2	521.785721	1041.55689	-1.186	-0.00061884	-3.0956	-0.0016152	-4.2816	-0.0022341	521.7839617027088	65.338	0.62187	65.065	64.675	65.297	-0.27283					23	16	2	0	0	0	0.023528	1	7682	7682		40.573	6.4001	1	289450			37191	9677	25464	25517	42851	42851					0.03777356862065062
LAIYTVTLL	9	Unmodified	_LAIYTVTLL_					0	0	0		ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2596130371094	2	503.812793	1005.61103	0.6982	0.00035176	-4.3775	-0.0022054	-3.6793	-0.0018537	503.8105153848146	22.878	0.41827	22.687	22.432	22.851	-0.19117					14	8	3	0	0	0	0.024487	1	802	802		31.955	10.253	1	56478			37192	8938	25465	25518	42852	42852					0.10845272285303054
LAKAKEKP	8	Unmodified	_LAKAKEKP_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.74005126953125	2	442.781828	883.549102	0.35527	0.00015731	-0.042306	-1.8732E-05	0.31297	0.00013858	442.7816561098156	25.348	0.40977	25.428	25.254	25.664	0.08009					14	9	2	0	0	0	0.027866	1	1147	1147		12.207	2.5012	1	52643	+		37193	19339	25466	25519	42853	42853					0.10266965656796856
LAKAWASTSV	10	Unmodified	_LAKAWASTSV_					0	0	0			REV__nc|ENSG00000008282|Q16563|SYPL1	REV__nc|ENSG00000008282|Q16563|SYPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.32470703125	2	517.287474	1032.5604	0.35198	0.00018208	-1.5652	-0.00080968	-1.2133	-0.00062761	517.2868036925313	50.536	0.78415	50.356	49.901	50.685	-0.18071					31	20	3	0	0	0	0.03519	1	5173	5173		31.53	3.6476	1	242980	+		37194	19878	25467	25520	42854	42854					0.04541742960282136
LAKDLGLGIG	10	Unmodified	_LAKDLGLGIG_					0	0	0		ENSG00000081818|ENST00000194152|PCDHB4	ENSG00000081818|ENST00000194152|PCDHB4	ENSG00000081818|ENST00000194152|PCDHB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.79266357421875	2	478.792392	955.570232	0.098262	4.7047E-05	-0.23603	-0.00011301	-0.13777	-6.5964E-05	478.79205258345297	50.925	0.55721	50.776	50.561	51.118	-0.14916					47	15	4	0	0	0	0.86389	1	5348	5348		56.434	3.0823	1	7089500			37195	1716	25468	25521	42855	42855					0.09066930965650499
LAKDQTKIP	9	Unmodified	_LAKDQTKIP_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3022766113281	2	507.303124	1012.5917	-0.49981	-0.00025356	-1.5734	-0.00079817	-2.0732	-0.0010517	507.3032308290185	56.919	1.1432	56.919	56.46	57.603	0					146	31	6	0	0	0	0.51687	1	6353	6353		58.23	0	1	30875000			37196	2401	25469	25522	42856	42856					0.08590315994376851
LAKDSPGAL	9	Unmodified	_LAKDSPGAL_					0	0	0			REV__nc|ENSG00000068028|Q9NS23-3|RASSF1	REV__nc|ENSG00000068028|Q9NS23-3|RASSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.2474670410156	2	436.247818	870.481082	-0.43006	-0.00018761	-0.47564	-0.0002075	-0.9057	-0.00039511	436.24751330056387	35.314	1.9258	35.314	34.408	36.334	0					138	51	4	0	0	0	0.13494	2	2705	2693;2705		102.77	8.1553	1	12416000	+		37197	20371	25470	25523	42857;42858	42858					0.04066096006135922
LAKDSPGAL	9	Unmodified	_LAKDSPGAL_					0	0	0			REV__nc|ENSG00000068028|Q9NS23-3|RASSF1	REV__nc|ENSG00000068028|Q9NS23-3|RASSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.2476501464844	2	436.247818	870.481082	-0.07547	-3.2924E-05	-0.90278	-0.00039383	-0.97825	-0.00042676	436.2473427352964	35.168	1.5459	35.212	34.593	36.139	0.044056					129	40	5	0	0	0	0.18915	1	2620	2620		90.777	5.4172	1	12445000	+		37198	20371	25470	25523	42859	42859					0.04066096006135922
LAKEDTKLN	9	Unmodified	_LAKEDTKLN_					0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.272216796875	2	516.290214	1030.56587	-0.91416	-0.00047197	-0.444	-0.00022923	-1.3582	-0.00070121	516.2897640243699	39.96	0.4441	39.848	39.534	39.978	-0.11223					19	11	3	0	0	0	0.024523	1	3424	3424		10.265	0	1	393960	+		37199	26968	25471	25524	42860	42860					0.051814217520814054
LAKEQRYQLRK	11	Unmodified	_LAKEQRYQLRK_					0	0	0			REV__LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	REV__LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.2840576171875	3	478.284287	1431.83103	-0.016836	-8.0523E-06	0.11398	5.4513E-05	0.09714	4.6461E-05	478.284224598333	18.208	0.39619	18.004	17.767	18.163	-0.20371					17	7	3	0	0	0	1.0834	1	264	264		15.921	2.4127	1	76343	+		37200	36305	25472	25525	42861	42861					0.13238890945535786
LAKERREL	8	Unmodified	_LAKERREL_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.80615234375	2	507.806365	1013.59818	0.53261	0.00027047	-0.52531	-0.00026675	0.0073063	3.7102E-06	507.80588260441334	20.707	0.54245	20.512	20.286	20.828	-0.19577					27	10	3	0	0	0	0.85395	1	565	565		54.776	10.399	1	321040			37201	1365	25473	25526	42862	42862					0.09192253945752782
LAKGPERLA	9	Unmodified	_LAKGPERLA_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7904052734375	2	477.790184	953.565815	-0.94085	-0.00044953	0.66237	0.00031648	-0.27848	-0.00013306	477.7904062499925	30.022	0.70562	30.098	29.839	30.545	0.075436					32	16	3	0	0	0	0.17455	1	1850	1850		94.006	6.2521	1	763130	+		37202	26487	25474	25527	42863	42863					0.08717466542736929
LAKGTVQTGV	10	Unmodified	_LAKGTVQTGV_					0	0	0		ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2879638671875	2	487.287474	972.560395	0.19822	9.6588E-05	-0.33367	-0.00016259	-0.13546	-6.6006E-05	487.28714184782865	20.814	0.49199	20.882	20.661	21.153	0.068901					19	9	3	0	0	0	1.0508	1	553	553		39.253	1.4413	1	164440			37203	7721	25475	25528	42864	42864					0.07301742960294177
LAKHILHCK	9	Unmodified	_LAKHILHCK_					0	0	0		ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8202514648438	2	531.815679	1061.6168	0.2667	0.00014184	2.0406	0.0010852	2.3073	0.001227	531.8167658167134	100.04	0.8317	99.916	99.571	100.4	-0.12504					34	25	2	0	0	0	0.80658	1	12392	12392		38.806	1.647	1	678900			37204	8897	25476	25529	42865	42865					0.08846092315957321
LAKHPQEL	8	Unmodified	_LAKHPQEL_					0	0	0			REV__ENST00000423405.1_1:144598537-144606397:+|nuORF	REV__ENST00000423405.1_1:144598537-144606397:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.268310546875	2	468.269084	934.523616	-1.27	-0.00059472	1.3163	0.0006164	0.046294	2.1678E-05	468.2695569014408	60.332	0.94157	60.411	60.088	61.029	0.078888					61	24	4	0	0	0	0.71833	1	6870	6870		65.803	0	1	4996500	+		37205	32217	25477	25530	42866	42866					0.05373491134378128
LAKIIPPKE	9	Unmodified	_LAKIIPPKE_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.8158874511719	2	504.826235	1007.63792	0.19673	9.9315E-05	-0.6365	-0.00032132	-0.43977	-0.00022201	504.8258419201266	68.09	0.44649	67.856	67.595	68.042	-0.23376					16	10	2	0	0	0	0.024541	1	7881	7881		29.15	10.825	1	116050			37206	4258	25478	25531	42867	42867					0.13440380896463466
LAKIIPPKE	9	Unmodified	_LAKIIPPKE_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.826235	1007.63792	0.03365	1.6987E-05	-0.39245	-0.00019812	-0.3588	-0.00018113	504.8257611358828	67.56	0.54776	67.56	67.245	67.792	0	-0.17179	0.00019015	NaN	35.618	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185050			37207	4258	25478	25531							0.13440380896463466
LAKIIPPKE	9	Unmodified	_LAKIIPPKE_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.826235	1007.63792	0.26929	0.00013594	-0.40409	-0.000204	-0.1348	-6.8051E-05	504.8258774021493	67.613	0.62691	67.637	67.27	67.897	0.023911	-0.095625	0.00017839	NaN	35.618	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193890			37208	4258	25478	25531							0.13440380896463466
LAKKFLRSL	9	Unmodified	_LAKKFLRSL_					0	0	0			REV__ENST00000439174.6_1_17:63009236-63009521:-|nuORF	REV__ENST00000439174.6_1_17:63009236-63009521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.3271484375	2	538.352951	1074.69135	0.31329	0.00016866	2.3758	0.001279	2.6891	0.0014477	538.3540329682122	99.706	0.28381	99.571	99.469	99.753	-0.13526					12	6	3	0	0	0	0.024541	1	12375	12375		15.642	5.9362	1	121470	+		37209	32503	25479	25532	42868	42868					0.15699178398972435
LAKKHLLL	8	Unmodified	_LAKKHLLL_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30633544921875	2	468.323663	934.632772	-0.78538	-0.00036781	3.5019	0.00164	2.7166	0.0012722	468.325165844104	62.027	0.397	62.027	61.72	62.117	0					15	10	2	0	0	0	0.027866	1	7167	7167		65.897	0	1	374370	+		37210	25917	25480	25533	42869	42869					0.1628412182452621
LAKKHLLL	8	Unmodified	_LAKKHLLL_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.305908203125	2	468.323663	934.632772	-0.33034	-0.0001547	4.1601	0.0019483	3.8298	0.0017936	468.3261312004478	62.26	0.31626	62.033	61.803	62.119	-0.22663					12	8	2	0	0	0	0.027866	1	7172	7172		54.765	0	1	392730	+		37211	25917	25480	25533	42870	42870					0.1628412182452621
LAKKRMEL	8	Unmodified	_LAKKRMEL_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3088684082031	2	494.802237	987.589921	0.3975	0.00019669	-3.2891	-0.0016275	-2.8916	-0.0014308	494.8005557132478	68.177	0.57572	68.177	67.719	68.295	0					28	14	3	0	0	0	0.027866	1	8180	8180		25.45	3.7478	1	786050	+		37212	20167	25481	25534	42871	42871					0.09562983704768158
LAKKSAGR	8	Unmodified	_LAKKSAGR_					0	0	0			REV__FCHSD2-NUMA1|1|fusion;REV__nc|ENSG00000137497|Q14980-2|NUMA1	REV__nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.24835205078125	2	415.763969	829.513385	-0.36982	-0.00015376	0.84975	0.00035329	0.47992	0.00019954	415.76406993562733	36.174	0.65908	36.174	35.849	36.508	0					32	18	3	0	0	0	0.027866	1	2801	2801		21.96	0	1	667290	+		37213	23762;36034	25482	25535	42872	42872					0.09180928199805294
LAKKVYPM	8	Unmodified	_LAKKVYPM_					0	0	0			REV__ENSG00000149328|ENST00000535456|GLB1L2	REV__ENSG00000149328|ENST00000535456|GLB1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7924499511719	2	475.280606	948.546659	0.49054	0.00023314	1.2508	0.00059448	1.7413	0.00082762	475.2815999032346	50.299	0.67186	50.148	49.854	50.526	-0.1512					24	19	2	0	0	0	0.027866	1	5259	5259		39.021	1.8624	1	1269400	+		37214	24672	25483	25536	42873	42873					0.07032793927487546
LAKKWILK	8	Unmodified	_LAKKWILK_					0	0	0			REV__ENST00000566111.5_1_1:158969979-158970069:+|nuORF	REV__ENST00000566111.5_1_1:158969979-158970069:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2907409667969	2	500.339313	998.664072	-0.22282	-0.00011148	-3.623	-0.0018127	-3.8458	-0.0019242	500.33729085302116	23.939	0.30593	23.759	23.607	23.913	-0.17989					12	6	3	0	0	0	0.027866	1	996	996		14.664	0	1	61949	+		37215	35295	25484	25537	42874	42874					0.16468694858610888
LAKLEKKD	8	Unmodified	_LAKLEKKD_					0	0	0			REV__SLITRK6|p.K642Efs*5|1|0.09|ENSG00000184564|chr13:85794586-85794587|-/T|frameshift_variant	REV__SLITRK6|p.K642Efs*5|1|0.09|ENSG00000184564|chr13:85794586-85794587|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.7920837402344	2	472.792392	943.570232	1.0065	0.00047585	-1.2028	-0.00056868	-0.19635	-9.2832E-05	472.7918087186321	18.478	0.88958	18.321	18.099	18.989	-0.15637					43	17	5	0	0	0	0.46709	1	301	301		88.643	0	1	2282300	+		37216	27682	25485	25538	42875	42875					0.0961893096566655
LAKLEPQVIKV	11	Unmodified	_LAKLEPQVIKV_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.3964233398438	2	619.397556	1236.78056	-1.2093	-0.00074906	0.23426	0.0001451	-0.97508	-0.00060396	619.397594105962	52.089	0.51806	52.181	51.967	52.486	0.091938					37	12	4	0	0	0	1.0592	1	5502	5502		22.58	0.61977	1	2016900	+		37217	36566	25486	25539	42876	42876					0.1716396856782012
LAKLPLAEE	9	Unmodified	_LAKLPLAEE_					0	0	0		nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1;nc|ENSG00000072952|Q9Y6F6-6|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.29241943359375	2	492.292225	982.569897	1.2262	0.00060363	-4.1162	-0.0020264	-2.8901	-0.0014228	492.2900826585101	22.972	0.55204	22.781	22.572	23.124	-0.19117					19	11	2	0	0	0	0.78069	1	835	835		40.573	1.7665	1	291850			37218	1495	25487	25540	42877	42877					0.07791511245795846
LAKLPLAEE	9	Unmodified	_LAKLPLAEE_					0	0	0		nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1;nc|ENSG00000072952|Q9Y6F6-6|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.292225	982.569897	-0.13278	-6.5369E-05	-2.8946	-0.001425	-3.0274	-0.0014904	492.29067131985795	22.818	0.56031	22.629	22.42	22.98	-0.18894	-0.089972	0.0002268	NaN	40.573	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267410			37219	1495	25487	25540							0.07791511245795846
LAKLPLAEE	9	Unmodified	_LAKLPLAEE_					0	0	0		nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1;nc|ENSG00000072952|Q9Y6F6-6|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	492.292225	982.569897	-0.37791	-0.00018604	-2.5419	-0.0012514	-2.9199	-0.0014374	492.29083450146464	22.933	0.46128	22.747	22.554	23.015	-0.18539	0.028096	0.00057407	NaN	40.573	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338230			37220	1495	25487	25540							0.07791511245795846
LAKMISNLV	9	Unmodified	_LAKMISNLV_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MSMS	OPSCC_39_ClassI_Rep-3	3	494.7948303222656	2	494.79662	987.578688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.824	1	95.826	95.326	96.326	0.0020752								0	0	0	0.25637	1	12132	12132		71.296	5.4925	1		+		37221	21275	25488	25541	42878	42878					0.08440161610633368
LAKMYVDI	8	Unmodified	_LAKMYVDI_					0	0	0		SLCO1B3|p.F230L|1|0.19|ENSG00000111700|chr12:20862815-20862815|T/C|missense_variant	SLCO1B3|p.F230L|1|0.19|ENSG00000111700|chr12:20862815-20862815|T/C|missense_variant	SLCO1B3|p.F230L|1|0.19|ENSG00000111700|chr12:20862815-20862815|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.3155822753906	2	476.762246	951.50994	0.21925	0.00010453	-0.19217	-9.162E-05	0.027082	1.2912E-05	476.76202059485604	66.486	0.97414	66.205	65.387	66.361	-0.28149					37	27	2	0	0	0	0.027866	1	7830	7830		30.504	12.179	1	1275600			37222	37897	25489	25542	42879	42879					0.03224497310930019
LAKNERVI	8	Unmodified	_LAKNERVI_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7900390625	2	471.790184	941.565815	0.082764	3.9047E-05	-0.97161	-0.00045839	-0.88884	-0.00041935	471.7897649574988	47.919	1.4407	47.919	47.529	48.969	0					126	42	5	0	0	0	0.33369	1	4826	4826		106.42	4.8145	1	49165000	+		37223	22185	25490	25543	42880	42880					0.0926946654275298
LAKNLEELD	9	Unmodified	_LAKNLEELD_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-7|AKNA	REV__nc|ENSG00000106948|Q7Z591-7|AKNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7982177734375	2	522.782222	1043.54989	-0.068702	-3.5916E-05	-1.279	-0.00066861	-1.3477	-0.00070453	522.7816575228842	61.897	0.70821	61.671	61.375	62.084	-0.22663					46	18	3	0	0	0	0.024427	1	7214	7214		26.693	0	1	1950400	+		37224	21648	25491	25544	42881	42881					0.029857155152058112
LAKPQPAQLV	10	Unmodified	_LAKPQPAQLV_					0	0	0			REV__ENST00000586344.5_1_19:5917623-5933521:-|nuORF	REV__ENST00000586344.5_1_19:5917623-5933521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.271728515625	2	532.826766	1063.63898	-0.04618	-2.4606E-05	1.4569	0.00077625	1.4107	0.00075164	532.827267736857	50.22	0.45295	50.115	49.82	50.273	-0.10558					15	11	2	0	0	0	0.03519	1	5052	5052		10.866	0	1	114490	+		37225	35597	25492	25545	42882	42882					0.1097059526537123
LAKPQVAGAA	10	Unmodified	_LAKPQVAGAA_					0	0	0			REV__DPPA2|p.R195G|1|0.2|ENSG00000163530|chr3:109308107-109308107|T/C|missense_variant	REV__DPPA2|p.R195G|1|0.2|ENSG00000163530|chr3:109308107-109308107|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2766418457031	2	463.276909	924.539266	-1.008	-0.00046699	0.08149	3.7752E-05	-0.92653	-0.00042924	463.27674714400075	37.719	0.7486	37.719	37.45	38.199	0					59	21	4	0	0	0	0.941	1	3093	3093		51.335	0	1	4516100	+		37226	19704	25493	25546	42883	42883					0.07397777651419801
LAKPQVAGAA	10	Unmodified	_LAKPQVAGAA_					0	0	0			REV__DPPA2|p.R195G|1|0.2|ENSG00000163530|chr3:109308107-109308107|T/C|missense_variant	REV__DPPA2|p.R195G|1|0.2|ENSG00000163530|chr3:109308107-109308107|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.2763977050781	2	463.276909	924.539266	-0.86001	-0.00039842	0.065107	3.0163E-05	-0.7949	-0.00036826	463.2767561266968	37.638	0.97112	37.573	37.341	38.312	-0.06456					65	27	5	0	0	0	0.79525	2	3076	3065;3076		60.972	5.237	1	4363900	+		37227	19704	25493	25546	42884;42885	42885					0.07397777651419801
LAKPRLSRA	9	Unmodified	_LAKPRLSRA_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7565612792969	2	506.324725	1010.6349	-1.0727	-0.00054315	0.90952	0.00046051	-0.16322	-8.2641E-05	506.32515841617095	38.079	0.40424	37.996	37.813	38.217	-0.082516					25	11	3	0	0	0	0.024535	1	3172	3172		12.207	0	1	605020			37228	18231	25494	25547	42886	42886					0.13000550562321678
LAKQLKIK	8	Unmodified	_LAKQLKIK_					0	0	0			REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.3288879394531	2	471.328945	940.643337	0.50681	0.00023888	-0.39347	-0.00018545	0.11334	5.3421E-05	471.3285976223392	18.785	0.74334	18.581	18.064	18.807	-0.20371					24	14	3	0	0	0	0.87148	1	336	336		53.351	3.3269	1	213530	+		37229	33447	25495	25548	42887	42887					0.17064104478924946
LAKQTCNLN	9	Unmodified	_LAKQTCNLN_					0	0	0			REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7630615234375	2	502.763309	1003.51206	-0.76204	-0.00038313	0.1768	8.8887E-05	-0.58525	-0.00029424	502.7632938474593	35.564	2.7587	35.564	34.168	36.927	0					136	73	2	0	0	0	0.19099	1	2757	2757		90.37	5.4543	1	2380600	+		37230	28159	25496	25549	42888	42888					0.01044926048734851
LAKREALV	8	Unmodified	_LAKREALV_					0	0	0			REV__ENSG00000125901|ENST00000380325|MRPS26	REV__ENSG00000125901|ENST00000380325|MRPS26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2508850097656	2	450.287277	898.560001	0.24792	0.00011163	-0.0086321	-3.8869E-06	0.23929	0.00010775	450.2870580337194	32.724	0.89044	32.787	32.577	33.468	0.062885					45	23	4	0	0	0	0.027866	1	2264	2264		106.42	10.225	1	1310800	+		37231	22860	25497	25550	42889	42889					0.10666368031093043
LAKSGAIIG	9	Unmodified	_LAKSGAIIG_					0	0	0			REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.26092529296875	2	415.260728	828.506903	-0.13111	-5.4445E-05	0.30338	0.00012598	0.17227	7.1537E-05	415.2608282568481	20.298	1.1181	20.298	20.028	21.146	0					55	22	4	0	0	0	0.18915	1	515	515		90.777	2.1338	1	2455200	+		37232	21877	25498	25551	42890	42890					0.08578990248429363
LAKSGAIIG	9	Unmodified	_LAKSGAIIG_					0	0	0			REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.2608642578125	2	415.260728	828.506903	1.3735	0.00057038	-1.0522	-0.00043695	0.32132	0.00013343	415.2602695397028	20.322	1.1814	20.39	20.119	21.3	0.068901					51	23	4	0	0	0	0.35646	1	498	498		68.787	0.30212	1	2384600	+		37233	21877	25498	25551	42891	42891					0.08578990248429363
LAKSPLKV	8	Unmodified	_LAKSPLKV_					0	0	0			REV__nc|ENSG00000090372|Q9NRL3-3|STRN4;REV__nc|ENSG00000090372|Q9NRL3-2|STRN4	REV__nc|ENSG00000090372|Q9NRL3-3|STRN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2872314453125	2	428.286746	854.558939	-0.77509	-0.00033196	0.87774	0.00037593	0.10265	4.3965E-05	428.286988656732	63.009	1.0071	63.009	62.729	63.736	0					65	26	4	0	0	0	0.95679	1	7338	7338		44.117	0	1	5906900	+		37234	20871;36502	25499	25552	42892	42892					0.12584153662180597
LAKSRGPPS	9	Unmodified	_LAKSRGPPS_					0	0	0		ENST00000399138.4_1_17:18112936-18113035:+|nuORF	ENST00000399138.4_1_17:18112936-18113035:+|nuORF	ENST00000399138.4_1_17:18112936-18113035:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.76629638671875	2	456.766709	911.518865	0.017596	8.0373E-06	-0.69705	-0.00031839	-0.67946	-0.00031035	456.7664708931498	23.19	1.5009	23.19	22.665	24.166	0					120	34	5	0	0	0	0.17822	5	887	854;863;887;900;913		93.195	13.744	1	22732000			37235	13635	25500	25553	42893;42894;42895;42896;42897	42895					0.05956606991617264
LAKSRGPPS	9	Unmodified	_LAKSRGPPS_					0	0	0		ENST00000399138.4_1_17:18112936-18113035:+|nuORF	ENST00000399138.4_1_17:18112936-18113035:+|nuORF	ENST00000399138.4_1_17:18112936-18113035:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7665100097656	2	456.766709	911.518865	-0.3124	-0.0001427	-0.36958	-0.00016881	-0.68198	-0.00031151	456.7666391219193	23.195	1.3674	23.134	22.663	24.03	-0.060862					88	31	3	0	0	0	0.12602	4	877	853;877;890;902		104.75	22.442	1	21323000			37236	13635	25500	25553	42898;42899;42900;42901	42899					0.05956606991617264
LAKSRGPPS	9	Unmodified	_LAKSRGPPS_					0	0	0		ENST00000399138.4_1_17:18112936-18113035:+|nuORF	ENST00000399138.4_1_17:18112936-18113035:+|nuORF	ENST00000399138.4_1_17:18112936-18113035:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7666931152344	2	456.766709	911.518865	-0.30931	-0.00014128	-0.43086	-0.0001968	-0.74017	-0.00033808	456.76661331979113	23.06	1.5263	23.137	22.656	24.182	0.076241					120	34	5	0	0	0	0.20967	2	839	839;851		87.754	8.3033	1	22697000			37237	13635	25500	25553	42902;42903	42902					0.05956606991617264
LAKSTAPPS	9	Unmodified	_LAKSTAPPS_					0	0	0			REV__ENSG00000198026|ENST00000322927|ZNF335	REV__ENSG00000198026|ENST00000322927|ZNF335	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.2475891113281	2	436.247818	870.481082	-0.80408	-0.00035078	-0.052383	-2.2852E-05	-0.85647	-0.00037363	436.2477168788436	35.189	2.4673	35.168	34.244	36.711	-0.021763					144	65	5	0	0	0	0.15366	2	2653	2653;2677		98.629	5.9763	1	12541000	+		37238	28375	25501	25554	42904;42905	42904					0.040660960061472906
LAKVAKFEDK	10	Unmodified	_LAKVAKFEDK_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.8351440429688	2	574.837331	1147.66011	0.33217	0.00019094	-4.4331	-0.0025483	-4.1009	-0.0023574	574.8350371067661	106.01	0.79631	105.85	105.56	106.35	-0.16132					78	35	4	0	0	0	1.1088	1	13184	13184		31.53	4.8369	1	249170	+		37239	26705	25502	25555	42906	42906					0.09218560574208823
LAKVKVPDF	9	Unmodified	_LAKVKVPDF_					0	0	0			REV__ENST00000465385.5_1_22:24122222-24125728:+|nuORF	REV__ENST00000465385.5_1_22:24122222-24125728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7779846191406	2	508.810585	1015.60662	0.78885	0.00040137	-3.5939	-0.0018286	-2.8051	-0.0014273	509.3110795532167	19.278	0.19765	19.278	19.119	19.317	0					5	3	2	0	0	0	0.02435	1	393	393		42.396	0	1	15278	+		37240	21023	25503	25556	42907	42907					0.09943807862373433
LAKVLRLLA	9	Unmodified	_LAKVLRLLA_					0	0	0		TEX11|p.D528Lfs*5|1|0.13|ENSG00000120498|chrX:70629682-70629683|-/AG|frameshift_variant;TEX11|p.E527Vfs*12|1|0.13|ENSG00000120498|chrX:70629684-70629685|-/AGACACAGAAGAGACCTTTA|frameshift_variant;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	TEX11|p.D528Lfs*5|1|0.13|ENSG00000120498|chrX:70629682-70629683|-/AG|frameshift_variant	TEX11|p.D528Lfs*5|1|0.13|ENSG00000120498|chrX:70629682-70629683|-/AG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.771728515625	2	498.850045	995.685536	-0.60558	-0.0003021	1.5736	0.00078499	0.96802	0.0004829	498.8506063536388	31.341	0.29614	31.189	31.045	31.342	-0.15231					9	7	2	0	0	0	0.024541	1	2061	2061		12.959	4.7279	1	75551			37241	3819	25504	25557	42908	42908					0.18752079887326545
LAKVNTTL	8	Unmodified	_LAKVNTTL_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.2662658691406	2	430.26601	858.517468	1.2909	0.00055542	-1.0539	-0.00045347	0.23696	0.00010195	430.26540174111204	20.567	0.44275	20.636	20.415	20.858	0.068901					24	8	4	0	0	0	0.74904	1	520	520		63.306	2.3343	1	391310	+		37242	25086	25505	25558	42909	42909					0.08254972902852842
LAKVNTTL	8	Unmodified	_LAKVNTTL_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.2662048339844	2	430.26601	858.517468	-0.36833	-0.00015848	0.85209	0.00036662	0.48376	0.00020815	430.26624142816445	20.911	0.79084	20.698	20.425	21.216	-0.2128					36	15	4	0	0	0	0.44658	1	571	571		90.777	8.4716	1	449430	+		37243	25086	25505	25558	42910	42910					0.08254972902852842
LAKVNTTLE	9	Unmodified	_LAKVNTTLE_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7882080078125	2	494.787307	987.560061	-0.85963	-0.00042533	1.4515	0.00071819	0.59189	0.00029286	494.787555345094	30.419	0.45823	30.419	30.258	30.717	0					21	10	3	0	0	0	0.4752	1	1957	1957		60.972	3.1607	1	1193600	+		37244	25086	25506	25559	42911	42911					0.06578323240432837
LAKVNTTLE	9	Unmodified	_LAKVNTTLE_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	494.787307	987.560061	-0.85963	-0.00042533	1.4515	0.00071819	0.59189	0.00029286	494.787555345094	30.419	0.45823	30.419	30.258	30.717	0	0.16241	0.0021626	NaN	60.972	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1193600	+		37245	25086	25506	25559							0.06578323240432837
LAKVRVTL	8	Unmodified	_LAKVRVTL_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2693176269531	2	450.30547	898.596387	-0.20595	-9.2738E-05	1.173	0.00052823	0.96709	0.00043549	450.3061116818885	44.255	1.0488	44.291	43.564	44.612	0.0369					46	29	3	0	0	0	0.027866	1	4079	4079		73.975	10.668	1	601690	+		37246	20709	25507	25560	42912	42912					0.1430324492780528
LAKVTLRPG	9	Unmodified	_LAKVTLRPG_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-2|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7904052734375	2	477.808377	953.6022	-0.78705	-0.00037606	1.2151	0.00058059	0.42805	0.00020453	477.80872814109415	30.151	0.70477	30.225	30.003	30.708	0.074314					33	16	3	0	0	0	0.023817	1	1850	1850		82.305	10.927	1	202330	+		37247	20884	25508	25561	42913	42913					0.12354343439471904
LAKVTLRPG	9	Unmodified	_LAKVTLRPG_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-2|USP48	REV__nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.808377	953.6022	-0.43314	-0.00020696	0.56032	0.00026773	0.12718	6.077E-05	477.80837839679566	30.414	0.62139	30.414	30.176	30.797	0	0.060353	-0.00026102	NaN	82.305	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191300	+		37248	20884	25508	25561							0.12354343439471904
LAKVVKLI	8	Unmodified	_LAKVVKLI_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2589416503906	2	442.320589	882.626624	-0.348	-0.00015393	-4.2269	-0.0018697	-4.5749	-0.0020236	442.3173780028648	27.454	0.43684	27.454	27.179	27.616	0					14	11	2	0	0	0	0.027866	1	1530	1530		13.775	0	1	56738	+		37249	19713;23476	25509	25562	42914	42914					0.18061603593002928
LAKVVKTL	8	Unmodified	_LAKVVKTL_					0	0	0		nc|ENSG00000076944|Q15833-3|STXBP2;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.8812255859375	2	436.302396	870.590239	-0.31377	-0.0001369	0.9828	0.0004288	0.66903	0.0002919	436.3026705655813	39.878	0.68329	39.728	39.357	40.04	-0.1497					39	17	3	0	0	0	0.027866	1	3406	3406		47.657	12.039	1	1621300			37250	18085	25510	25563	42915	42915					0.14976726696284004
LAKWYEKLFGR	11	Unmodified	_LAKWYEKLFGR_					0	0	0		ALG1|p.F184L|1|0.15|ENSG00000033011|chr16:5077457-5077457|C/A|missense_variant	ALG1|p.F184L|1|0.15|ENSG00000033011|chr16:5077457-5077457|C/A|missense_variant	ALG1|p.F184L|1|0.15|ENSG00000033011|chr16:5077457-5077457|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3288879394531	3	470.934595	1409.78196	0.53885	0.00025376	1.5193	0.00071548	2.0581	0.00096925	470.93539303328043	18.822	0.34665	18.618	18.411	18.757	-0.20371					10	6	2	0	0	0	0.024779	1	336	336		16.53	12.911	1	50377			37251	62	25511	25564	42916	42916					0.09345602656571828
LALAHVVLIL	10	Unmodified	_LALAHVVLIL_					0	0	0		ENSG00000212807|ENST00000641810|OR2A42;ENSG00000221970|ENST00000641044|OR2A1	ENSG00000212807|ENST00000641810|OR2A42	ENSG00000212807|ENST00000641810|OR2A42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3082275390625	2	531.357702	1060.70085	1.2117	0.00064384	-2.6499	-0.001408	-1.4382	-0.00076419	531.3566234578019	59.071	0.18015	58.884	58.721	58.902	-0.18705					6	4	2	0	0	0	0.03519	1	6688	6688		35.201	0	1	150540			37252	10483	25512	25565	42917	42917					0.17292946684528943
LALALPVARR	10	Unmodified	_LALALPVARR_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2897338867188	2	540.356025	1078.6975	-0.40601	-0.00021939	-0.24047	-0.00012994	-0.64648	-0.00034933	540.3557560869424	53.854	0.46147	53.854	53.582	54.043	0					21	12	2	0	0	0	0.03519	1	5821	5821		31.955	7.7521	1	339490	+		37253	26922	25513	25566	42918	42918					0.16129696630491708
LALAPGARR	9	Unmodified	_LALAPGARR_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.79034423828125	2	462.790518	923.566484	-0.58703	-0.00027167	0.7257	0.00033585	0.13866	6.4172E-05	462.79068789414526	20.153	0.87299	20.153	19.689	20.562	0					44	17	4	0	0	0	0.60698	1	504	504		52.299	0	1	304720			37254	11723	25514	25567	42919	42919					0.10164305982470978
LALAPNSTAR	10	Unmodified	_LALAPNSTAR_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.30316162109375	2	507.290548	1012.56654	0.31297	0.00015876	4.2494	0.0021557	4.5623	0.0023144	507.7957670974708	47.172	0.33812	47.019	46.858	47.196	-0.15301					11	8	2	0	0	0	0.03519	1	4666	4666		87.696	0	1	118800			37255	2494	25515	25568	42920	42920					0.060762611917994036
LALAPRKP	8	Unmodified	_LALAPRKP_					0	0	0		nc|ENSG00000130023|Q5T6L9-3|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2558288574219	2	433.284537	864.554522	-1.07	-0.00046361	0.69905	0.00030289	-0.37093	-0.00016072	433.2848110521967	44.502	0.5702	44.357	44.131	44.701	-0.14471					24	16	2	0	0	0	0.027866	1	4205	4205		4.3163	0	1	207280			37256	18264	25516	25569	42921	42921					0.11682689239273714
LALARGVEAL	10	Unmodified	_LALARGVEAL_					0	0	0		ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8114318847656	2	506.811116	1011.60768	0.53467	0.00027098	-1.3459	-0.00068214	-0.81128	-0.00041116	506.81053479143134	54.415	1.2551	54.513	54.077	55.332	0.098011					114	35	5	0	0	0	0.71272	1	5851	5851		66.429	2.222	1	38735000			37257	15882	25517	25570	42922	42922					0.10234022231293238
LALARNSLV	9	Unmodified	_LALARNSLV_					0	0	0		ENST00000367161.7_1_1:205116255-205116297:-|nuORF	ENST00000367161.7_1_1:205116255-205116297:-|nuORF	ENST00000367161.7_1_1:205116255-205116297:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.79766845703125	2	478.798009	955.581465	-0.019653	-9.4098E-06	0.23649	0.00011323	0.21684	0.00010382	478.7979867124869	50.249	0.63819	49.97	49.657	50.295	-0.27977					34	16	3	0	0	0	0.26966	1	5088	5088		79.713	4.6693	1	1386900			37258	12846	25518	25571	42923	42923					0.10189753059796658
LALAYSAIAV	10	Unmodified	_LALAYSAIAV_					0	0	0			REV__nc|ENSG00000291164|Q6ZMU1|C3P1	REV__nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2513427734375	2	496.294768	990.574983	0.27501	0.00013649	-0.93759	-0.00046532	-0.66258	-0.00032883	496.29416959967375	61.19	1.1155	61.261	60.91	62.026	0.071129					71	29	4	0	0	0	0.03519	1	6971	6971		73.975	2.679	1	7818400	+		37259	37238	25519	25572	42924	42924					0.0793181510841805
LALAYSAIAV	10	Unmodified	_LALAYSAIAV_					0	0	0			REV__nc|ENSG00000291164|Q6ZMU1|C3P1	REV__nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.294768	990.574983	-0.27912	-0.00013852	0.37247	0.00018485	0.093353	4.6331E-05	496.29472496215965	61.47	0.77699	61.256	60.96	61.737	-0.21375	0.009212	0.00076881	NaN	73.975	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011000	+		37260	37238	25519	25572							0.0793181510841805
LALAYSAIAV	10	Unmodified	_LALAYSAIAV_					0	0	0			REV__nc|ENSG00000291164|Q6ZMU1|C3P1	REV__nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.294768	990.574983	-0.84033	-0.00041705	1.002	0.0004973	0.1617	8.0252E-05	496.2950336254679	61.36	0.70252	61.184	60.914	61.617	-0.1761	-0.062418	0.0013937	NaN	73.975	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1099300	+		37261	37238	25519	25572							0.0793181510841805
LALAYSAIAV	10	Unmodified	_LALAYSAIAV_					0	0	0			REV__nc|ENSG00000291164|Q6ZMU1|C3P1	REV__nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.294768	990.574983	-0.50513	-0.00025069	0.63403	0.00031467	0.12891	6.3975E-05	496.2949041997015	61.531	0.77629	61.274	60.968	61.744	-0.25725	0.027326	0.0010284	NaN	73.975	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1226800	+		37262	37238	25519	25572							0.0793181510841805
LALCGLVCF	9	Unmodified	_LALCGLVCF_					0	0	0		nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.7460632324219	2	469.745542	937.476531	0.72593	0.000341	-0.101	-4.7442E-05	0.62493	0.00029356	469.7452972867687	19.783	0.49409	19.55	19.325	19.819	-0.23345					28	9	4	0	0	0	0.80342	1	450	450		39.021	0.21535	1	305670			37263	927	25520	25573	42925	42925					0.005291722673632648
LALCLQNSQ	9	Unmodified	_LALCLQNSQ_					0	0	0		ENST00000436747.5_1_2:242689048-242689147:+|nuORF	ENST00000436747.5_1_2:242689048-242689147:+|nuORF	ENST00000436747.5_1_2:242689048-242689147:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2853698730469	2	495.257859	988.501166	-0.49202	-0.00024368	0.064458	3.1923E-05	-0.42756	-0.00021175	495.2575083713007	50.622	1.0285	50.703	50.444	51.472	0.08099					37	28	2	0	0	0	0.024436	1	5365	5365		23.042	0	1	377060			37264	14282	25521	25574	42926	42926					0.006455236744500326
LALCLQNSQ	9	Unmodified	_LALCLQNSQ_					0	0	0		ENST00000436747.5_1_2:242689048-242689147:+|nuORF	ENST00000436747.5_1_2:242689048-242689147:+|nuORF	ENST00000436747.5_1_2:242689048-242689147:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.257859	988.501166	0.2093	0.00010366	-5.1615	-0.0025563	-4.9522	-0.0024526	495.25725096491345	50.777	0.74178	50.777	50.544	51.286	0	-0.051005	-0.0031446	NaN	23.042	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385190			37265	14282	25521	25574							0.006455236744500326
LALCLQNSQ	9	Unmodified	_LALCLQNSQ_					0	0	0		ENST00000436747.5_1_2:242689048-242689147:+|nuORF	ENST00000436747.5_1_2:242689048-242689147:+|nuORF	ENST00000436747.5_1_2:242689048-242689147:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.257859	988.501166	-0.20515	-0.0001016	0.035705	1.7683E-05	-0.16944	-8.3918E-05	495.2573998693104	50.954	0.55721	50.805	50.561	51.118	-0.14915	-0.022807	0.0020033	NaN	23.042	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411320			37266	14282	25521	25574							0.006455236744500326
LALCPIDQL	9	Carbamidomethyl (C)	_LALC(Carbamidomethyl (C))PIDQL_	LALC(1)PIDQL		LALC(66)PIDQL		0	1	0			REV__nc|ENSG00000168453|O43593-2|HR	REV__nc|ENSG00000168453|O43593-2|HR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8173828125	2	521.78371	1041.55287	-0.56419	-0.00029439	0.58432	0.00030489	0.020128	1.0503E-05	521.783802190829	65.08	0.43372	65.118	64.854	65.288	0.037376					19	11	2	0	0	0	0.023007	1	7573	7573		66.429	15.237	1	240790	+		37267	26261	25522	25575	42927	42927	346				0.03375267368346613
LALCPPIR	8	Unmodified	_LALCPPIR_					0	0	0		ENST00000397821.7_1_X:19554016-19554142:-|nuORF	ENST00000397821.7_1_X:19554016-19554142:-|nuORF	ENST00000397821.7_1_X:19554016-19554142:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7880554199219	2	441.765123	881.515694	0.16297	7.1994E-05	-0.50874	-0.00022474	-0.34577	-0.00015275	441.76354436998986	41.657	1.0413	41.68	41.076	42.117	0.023006					58	29	3	0	0	0	0.027866	1	3641	3641		14.664	0	1	460260			37268	13605	25523	25576	42928	42928					0.07019640613248157
LALCSKLSI	9	Carbamidomethyl (C)	_LALC(Carbamidomethyl (C))SKLSI_	LALC(1)SKLSI		LALC(130)SKLSI		0	1	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.79095458984375	2	502.794078	1003.5736	-1.2968	-0.00065201	-4.0902	-0.0020565	-5.3869	-0.0027085	502.79184270070397	62.548	1.1065	62.308	61.714	62.821	-0.23926					81	31	4	0	0	0	0.057894	1	7264	7264		125.81	8.9104	1	9458500			37269	2877	25524	25577	42929	42929	38				0.07195857748013168
LALDNQKKL	9	Unmodified	_LALDNQKKL_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8163452148438	2	521.816399	1041.61824	-1.4748	-0.00076958	1.5424	0.00080486	0.067606	3.5278E-05	521.817377216374	64.929	0.92853	64.666	64.379	65.307	-0.2626					81	24	4	0	0	0	0.091713	2	7631	7631;7644		113.41	1.0007	1	10600000			37270	5346	25525	25578	42930;42931	42930					0.09910004885705348
LALEDLEL	8	Unmodified	_LALEDLEL_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2294006347656	2	458.255308	914.496064	0.34579	0.00015846	-1.8512	-0.0008483	-1.5054	-0.00068984	458.25344307166546	28.594	0.53377	28.675	28.411	28.945	0.080811					33	12	4	0	0	0	0.027866	1	1645	1645		60.294	7.9948	1	620900	+		37271	24671	25526	25579	42932	42932					0.035395430834682884
LALEGGHDL	9	Unmodified	_LALEGGHDL_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000494800.1_1_2:239977015-240002822:-|nuORF;nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;ENST00000490851.5_1_7:18832955-19035682:+|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7;ENSG00000068024|ENST00000543185|HDAC4;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2314453125	2	462.742899	923.471246	-0.8088	-0.00037427	0.49567	0.00022937	-0.31313	-0.0001449	462.7430478254946	35.58	0.58155	35.58	35.343	35.924	0					28	14	3	0	0	0	0.024436	1	2768	2768		38.806	14.603	1	267310			37272	18046;1374;1242;2940	25527	25580	42933	42933					0.006449080007655539
LALEKELN	8	Unmodified	_LALEKELN_					0	0	0			REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2681579589844	2	465.26875	928.522947	-0.094055	-4.3761E-05	-0.56204	-0.0002615	-0.6561	-0.00030526	465.26825917434655	42.163	0.77537	42.031	41.716	42.491	-0.13219					88	22	6	0	0	0	0.32162	1	3856	3856		108.09	0	1	6290500	+		37273	20817	25528	25581	42934	42934					0.05582651694658125
LALEKVPK	8	Unmodified	_LALEKVPK_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7532653808594	2	449.292028	896.569503	0.53582	0.00024074	-0.35769	-0.00016071	0.17812	8.0029E-05	449.2917809603068	61.675	0.60932	61.449	61.118	61.727	-0.22663					27	15	2	0	0	0	0.027866	1	7106	7106		38.806	0	1	266670			37274	6460	25529	25582	42935	42935					0.11708136316610762
LALEVEEAKM	10	Unmodified	_LALEVEEAKM_					0	0	0			REV__CEP290|p.Q64E|1|0.33|ENSG00000198707|chr12:88139555-88139555|G/C|missense_variant	REV__CEP290|p.Q64E|1|0.33|ENSG00000198707|chr12:88139555-88139555|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.7967529296875	2	566.799557	1131.58456	0.50823	0.00028807	-3.5135	-0.0019915	-3.0053	-0.0017034	566.7974033023714	83.289	0.88387	83.12	82.734	83.618	-0.16915					52	20	4	0	0	0	0.45367	1	10057	10057		93.195	26.766	1	506800	+		37275	19292	25530	25583	42936	42936					0.024032153316284166
LALFAALLLGG	11	Unmodified	_LALFAALLLGG_					0	0	0			REV__ENSG00000267206|ENST00000341206|LCN6	REV__ENSG00000267206|ENST00000341206|LCN6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.761962890625	2	529.83406	1057.65357	-0.75627	-0.0004007	-2.5003	-0.0013247	-3.2565	-0.0017254	529.8326784486454	45.226	0.41433	45.126	44.942	45.356	-0.099445					20	11	2	0	0	0	0.024733	1	4255	4255		17.365	0.89182	1	241020	+		37276	29146	25531	25584	42937	42937					0.12704667413527204
LALFSGGAK	9	Unmodified	_LALFSGGAK_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.2533874511719	2	432.252903	862.491253	0.079115	3.4198E-05	-0.093379	-4.0363E-05	-0.014264	-6.1656E-06	432.25281025174536	31.491	1.9903	31.25	30.711	32.701	-0.24109					118	48	5	0	0	0	0.23085	1	2083	2083		84.916	1.6283	1	11840000	+		37277	22910	25532	25585	42938	42938					0.05450703731378326
LALFTCEMLV	10	Unmodified	_LALFTCEMLV_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.2963256835938	2	570.295596	1138.57664	-0.42138	-0.00024031	1.0187	0.00058094	0.59728	0.00034063	570.2959409480305	61.438	0.61728	61.18	60.888	61.505	-0.25725					38	14	4	0	0	0	0.941	1	6857	6857		51.335	6.9583	1	1320800			37278	18408	25533	25586	42939	42939					0.012893648104864042
LALFWRTK	8	Unmodified	_LALFWRTK_					0	0	0		ENSG00000148488|ENST00000377602|ST8SIA6	ENSG00000148488|ENST00000377602|ST8SIA6	ENSG00000148488|ENST00000377602|ST8SIA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.80908203125	2	517.810919	1033.60729	-0.751	-0.00038888	-3.3593	-0.0017395	-4.1103	-0.0021284	517.8089731727972	38.036	1.1461	37.817	37.344	38.491	-0.21849					56	27	4	0	0	0	0.91239	1	3097	3097		50.025	0.58299	1	2264400			37279	6037	25534	25587	42940	42940					0.09182647302077385
LALGAPTMNF	10	Unmodified	_LALGAPTMNF_					0	0	0		ENSG00000178965|ENST00000326665|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7726440429688	2	517.770603	1033.52665	-0.28773	-0.00014898	3.5846	0.001856	3.2969	0.001707	517.7721900389345	72.217	1.4046	72.019	71.748	73.152	-0.1981					82	33	4	0	0	0	0.62431	1	8457	8457		74.255	2.8771	1	2102000			37280	8850	25535	25588	42941	42941					0.011229981968654101
LALGFLLEMFE	11	Unmodified	_LALGFLLEMFE_					0	0	0			REV__ENSG00000046774|ENST00000247452|MAGEC2	REV__ENSG00000046774|ENST00000247452|MAGEC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8426513671875	2	641.841225	1281.6679	1.172	0.00075226	-1.6316	-0.0010473	-0.45961	-0.000295	641.840117202087	109.94	0.29144	109.93	109.79	110.08	-0.009491					26	12	3	0	0	0	1.0399	1	13907	13907		27.882	2.7563	1	759310	+		37281	20117	25536	25589	42942	42942					0.03832951779463656
LALGKLLEP	9	Unmodified	_LALGKLLEP_					0	0	0		nc|ENSG00000091137|O43511-2|SLC26A4;ENSG00000091137|ENST00000644269|SLC26A4	nc|ENSG00000091137|O43511-2|SLC26A4	nc|ENSG00000091137|O43511-2|SLC26A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2845764160156	2	477.305136	952.595718	0.25777	0.00012303	0.16874	8.0541E-05	0.42651	0.00020358	477.30524921348393	55.447	0.5684	55.291	55.059	55.628	-0.15601					27	15	3	0	0	0	0.024466	1	6149	6149		18.324	0	1	195480			37282	1955	25537	25590	42943	42943					0.11752405488084605
LALHIYGL	8	Unmodified	_LALHIYGL_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2540588378906	2	450.271096	898.527639	-0.12439	-5.6007E-05	-4.3204	-0.0019454	-4.4448	-0.0020014	450.269027623152	36.661	0.42084	36.603	36.333	36.754	-0.057987					19	10	2	0	0	0	0.027866	1	2921	2921		24.504	0	1	236990	+		37283	22596	25538	25591	42944	42944					0.07431580628076517
LALHIYGL	8	Unmodified	_LALHIYGL_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.271096	898.527639	0.80272	0.00036144	-6.755	-0.0030416	-5.9523	-0.0026802	450.26772131556424	36.786	0.76233	36.786	36.543	37.305	0	0.072385	-0.0021412	NaN	24.504	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221660	+		37284	22596	25538	25591							0.07431580628076517
LALHPLAE	8	Unmodified	_LALHPLAE_					0	0	0		ENST00000525039.5_1_11:118895622-118898521:-|nuORF;nc|ENSG00000137700|O43826-2|SLC37A4	ENST00000525039.5_1_11:118895622-118898521:-|nuORF	ENST00000525039.5_1_11:118895622-118898521:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.2528076171875	2	432.252903	862.491253	-0.063506	-2.745E-05	-0.041724	-1.8036E-05	-0.10523	-4.5486E-05	432.2528357509405	31.408	1.4765	31.223	30.824	32.3	-0.18503					101	35	4	0	0	0	0.37803	2	2085	2085;2111		100.27	17.968	1	11590000			37285	16078	25539	25592	42945;42946	42945					0.05450703731378326
LALHPLAE	8	Unmodified	_LALHPLAE_					0	0	0		ENST00000525039.5_1_11:118895622-118898521:-|nuORF;nc|ENSG00000137700|O43826-2|SLC37A4	ENST00000525039.5_1_11:118895622-118898521:-|nuORF	ENST00000525039.5_1_11:118895622-118898521:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.2530517578125	2	432.252903	862.491253	0.00060826	2.6292E-07	-0.14604	-6.3127E-05	-0.14543	-6.2864E-05	432.2527876766001	31.44	1.6414	31.288	30.928	32.57	-0.15231					109	40	5	0	0	0	0.61897	1	2112	2112		74.517	6.0319	1	11876000			37286	16078	25539	25592	42947	42947					0.05450703731378326
LALIALSPGY	10	Unmodified	_LALIALSPGY_					0	0	0			REV__nc|ENSG00000134812|P27352-2|CBLIF	REV__nc|ENSG00000134812|P27352-2|CBLIF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27398681640625	2	509.302593	1016.59063	0.15204	7.7434E-05	2.7996	0.0014258	2.9516	0.0015033	509.3038538735349	76.601	0.83645	76.333	76.129	76.966	-0.26806					46	19	3	0	0	0	0.03519	1	9148	9148		40.573	12.69	1	1066600	+		37287	23483	25540	25593	42948	42948					0.08300101625468415
LALIGPLVQV	10	Unmodified	_LALIGPLVQV_					0	0	0			REV__ENST00000565070.5_1_16:27237776-27268891:-|nuORF	REV__ENST00000565070.5_1_16:27237776-27268891:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2799682617188	2	511.83406	1021.65357	1.4925	0.00076392	-4.0518	-0.0020739	-2.5593	-0.0013099	511.83185591983533	19.45	0.39677	19.216	19.027	19.424	-0.23345					10	7	2	0	0	0	0.03519	1	408	408		19.36	7.1531	1	22340	+		37288	35268	25541	25594	42949	42949					0.14360667413529882
LALIGPLVQV	10	Unmodified	_LALIGPLVQV_					0	0	0			REV__ENST00000565070.5_1_16:27237776-27268891:-|nuORF	REV__ENST00000565070.5_1_16:27237776-27268891:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.83406	1021.65357	0.33725	0.00017262	-3.4554	-0.0017686	-3.1182	-0.001596	511.83238841872156	19.319	0.24792	19.159	19.034	19.282	-0.16079	-0.058687	0.00024248	NaN	25.45	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26442	+		37289	35268	25541	25594							0.14360667413529882
LALIGPLVQV	10	Unmodified	_LALIGPLVQV_					0	0	0			REV__ENST00000565070.5_1_16:27237776-27268891:-|nuORF	REV__ENST00000565070.5_1_16:27237776-27268891:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.83406	1021.65357	0.64471	0.00032999	-3.6094	-0.0018474	-2.9647	-0.0015175	511.83204383721767	19.477	0.44745	19.277	18.958	19.405	-0.2001	0.059917	8.4787E-05	NaN	25.45	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21458	+		37290	35268	25541	25594							0.14360667413529882
LALIRGDDG	9	Unmodified	_LALIRGDDG_					0	0	0			REV__ENSG00000048342|ENST00000424120|CC2D2A	REV__ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.73162841796875	2	465.256174	928.497795	-0.065283	-3.0373E-05	1.4332	0.00066679	1.3679	0.00063641	465.2560944661161	40.07	0.78964	40.093	39.873	40.663	0.023006					48	21	3	0	0	0	0.024466	1	3488	3488		18.324	0	1	464710	+		37291	20137	25542	25595	42950	42950					0.03068596892092046
LALKEQNNL	9	Unmodified	_LALKEQNNL_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3186645507812	2	521.798206	1041.58186	-1.5599	-0.00081396	2.8509	0.0014876	1.291	0.00067364	521.7996297437732	65.04	0.49257	64.777	64.572	65.065	-0.2626					22	12	2	0	0	0	0.023635	1	7682	7682		47.657	0	1	279040			37292	11062	25543	25596	42951	42951					0.0627312798899311
LALKICMI	8	Unmodified	_LALKICMI_					0	0	0		nc|ENSG00000204161|Q5T292-3|TMEM273;nc|ENSG00000204161|Q5T292-2|TMEM273;nc|ENSG00000204161|Q5T292|TMEM273;ENSG00000204161|ENST00000374153|TMEM273	nc|ENSG00000204161|Q5T292-3|TMEM273	nc|ENSG00000204161|Q5T292-3|TMEM273	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2477111816406	2	452.77156	903.528566	0.59523	0.0002695	4.4692	0.0020235	5.0645	0.002293	452.77365561450114	33.032	0.18019	33.089	32.995	33.176	0.056572					6	4	2	0	0	0	0.027866	1	2308	2308		44.531	9.3304	1	82677			37293	18655	25544	25597	42952	42952					0.07294335681137909
LALKKLQKL	9	Unmodified	_LALKKLQKL_					0	0	0		NAP1L5|p.R90L|1|0.09|ENSG00000177432|chr4:88697486-88697486|C/A|missense_variant	NAP1L5|p.R90L|1|0.09|ENSG00000177432|chr4:88697486-88697486|C/A|missense_variant	NAP1L5|p.R90L|1|0.09|ENSG00000177432|chr4:88697486-88697486|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.239013671875	2	527.870977	1053.7274	-0.022814	-1.2043E-05	0.036763	1.9406E-05	0.013949	7.3632E-06	527.8709570633185	67.971	0.32297	67.737	67.595	67.918	-0.23376					11	7	2	0	0	0	0.024541	1	7828	7828		24.203	6.8378	1	91610			37294	18023	25545	25598	42953	42953					0.2026863557582601
LALKQGEEW	9	Unmodified	_LALKQGEEW_					0	0	0			REV__ENSG00000111404|ENST00000538724|RERGL	REV__ENSG00000111404|ENST00000538724|RERGL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2733764648438	2	537.284931	1072.55531	-0.29911	-0.00016071	3.9776	0.0021371	3.6785	0.0019764	537.2869327519326	36.986	0.46231	36.922	36.628	37.091	-0.063385					24	11	3	0	0	0	0.024405	1	2923	2923		27.882	0	1	340310	+		37295	21916	25546	25599	42954	42954					0.021934390976412033
LALKVIER	8	Unmodified	_LALKVIER_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1;nc|ENSG00000162779|Q5T1B0-2|AXDND1;ENST00000461179.2_1_1:179339175-179437601:+|nuORF	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.3089904785156	2	471.310752	940.606951	-0.037984	-1.7902E-05	-3.353	-0.0015803	-3.391	-0.0015982	471.3092114228552	17.348	0.7011	17.141	16.963	17.664	-0.20669					34	13	4	0	0	0	1.0574	1	185	185		23.042	2.5607	1	2630800			37296	6992	25547	25600	42955	42955					0.13427227582224077
LALLAYLVGR	10	Unmodified	_LALLAYLVGR_					0	0	0			REV__ENST00000379589.3_1_13:40175189-40175495:-|nuORF	REV__ENST00000379589.3_1_13:40175189-40175495:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8038330078125	2	544.844959	1087.67537	0.12796	6.9718E-05	2.6141	0.0014243	2.742	0.001494	544.8462791440952	21.775	0.38491	21.597	21.35	21.735	-0.17721					16	7	3	0	0	0	0.03519	1	716	716		29.15	0	1	50974	+		37297	31437	25548	25601	42956	42956					0.13503472162074104
LALLISSLT	9	Unmodified	_LALLISSLT_					0	0	0			REV__ENSG00000177414|ENST00000371077|UBE2U	REV__ENSG00000177414|ENST00000371077|UBE2U	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7845153808594	2	465.797143	929.579734	0.40337	0.00018789	-1.9382	-0.00090281	-1.5348	-0.00071492	465.7954159596935	44.498	0.16801	44.535	44.41	44.578	0.0369					6	4	2	0	0	0	0.024517	1	4194	4194		12.959	0	1	54178	+		37298	27111	25549	25602	42957	42957					0.11212699251177582
LALLIVFF	8	Unmodified	_LALLIVFF_					0	0	0			REV__SLC6A2|p.M411I|1|0.2|ENSG00000103546|chr16:55696310-55696310|G/A|missense_variant	REV__SLC6A2|p.M411I|1|0.2|ENSG00000103546|chr16:55696310-55696310|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.2276611328125	2	468.301865	934.589176	0.30403	0.00014238	-4.136	-0.0019369	-3.8319	-0.0017945	468.2997814947492	49.747	0.75138	49.641	49.259	50.011	-0.10558					27	19	2	0	0	0	0.027866	1	4974	4974		33.493	8.989	1	170560	+		37299	37509	25550	25603	42958	42958					0.11926512327363525
LALLLLVPGPG	11	Unmodified	_LALLLLVPGPG_					0	0	0		nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7	nc|ENSG00000243414|Q86XR7-2|TICAM2	nc|ENSG00000243414|Q86XR7-2|TICAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8076171875	2	531.84971	1061.68487	-0.70713	-0.00037609	2.2297	0.0011859	1.5226	0.00080978	531.8505772474745	47.872	0.15865	47.719	47.606	47.764	-0.15301					6	4	2	0	0	0	0.02479	1	4801	4801		17.365	0	1	202480			37300	18760	25551	25604	42959	42959					0.15649240447601187
LALLLVQAL	9	Unmodified	_LALLLVQAL_					0	0	0			REV__tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	REV__tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.8074951171875	2	477.323328	952.632104	0.034738	1.6581E-05	0.14881	7.1031E-05	0.18355	8.7612E-05	477.32331134516437	102.44	0.30523	102.32	102.15	102.45	-0.12666					10	6	2	0	0	0	0.024436	1	12750	12750		23.042	0	1	55651	+		37301	37726	25552	25605	42960	42960					0.15389282384796843
LALLPAIY	8	Unmodified	_LALLPAIY_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.1490478515625	2	437.275847	872.537141	-0.16173	-7.0719E-05	-4.3515	-0.0019028	-4.5133	-0.0019735	437.2737897866579	42.443	1.0625	42.32	41.998	43.061	-0.12299					59	27	4	0	0	0	0.027866	1	3918	3918		33.493	0	1	2625200			37302	8177	25553	25606	42961	42961					0.095773489136036
LALLQVNQAEL	11	Unmodified	_LALLQVNQAEL_					0	0	0		nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L;ENST00000597440.5_1_19:7913809-7917719:+|nuORF;ENST00000601984.1_1_19:7916400-7921867:+|nuORF	nc|ENSG00000142459|Q96CN4|EVI5L	nc|ENSG00000142459|Q96CN4|EVI5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.5706787109375	3	404.571322	1210.69214	-0.01647	-6.6633E-06	-2.0109	-0.00081354	-2.0273	-0.0008202	404.57044879348234	30.154	1.1138	30.162	29.797	30.911	0.0086708					77	26	4	0	0	0	1.0022	1	1906	1906		36.318	1.1656	1	2062900			37303	5561	25554	25607	42962	42962					0.09521928257390755
LALLQVNQAEL	11	Unmodified	_LALLQVNQAEL_					0	0	0		nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L;ENST00000597440.5_1_19:7913809-7917719:+|nuORF;ENST00000601984.1_1_19:7916400-7921867:+|nuORF	nc|ENSG00000142459|Q96CN4|EVI5L	nc|ENSG00000142459|Q96CN4|EVI5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.5708923339844	3	404.571322	1210.69214	0.91558	0.00037042	-2.9183	-0.0011807	-2.0027	-0.00081025	404.57005283006345	29.846	1.2331	29.924	29.646	30.879	0.078344					91	29	5	0	0	0	1.0074	1	1824	1824		35.178	1.2566	1	1825700			37304	5561	25554	25607	42963	42963					0.09521928257390755
LALLSGDAKPE	11	Unmodified	_LALLSGDAKPE_					0	0	0		nc|ENSG00000075292|Q14966-6|ZNF638	nc|ENSG00000075292|Q14966-6|ZNF638	nc|ENSG00000075292|Q14966-6|ZNF638	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2598266601562	2	557.311146	1112.60774	0.0024278	1.353E-06	-3.2746	-0.001825	-3.2722	-0.0018236	557.3090329640978	79.535	0.41879	79.385	79.11	79.529	-0.15051					17	9	2	0	0	0	0.024771	1	9481	9481		28.081	0	1	103190			37305	18082	25555	25608	42964	42964					0.05593977440616982
LALLSLLLDP	10	Unmodified	_LALLSLLLDP_					0	0	0			REV__ENST00000541477.5_1_12:7032098-7032224:+|nuORF	REV__ENST00000541477.5_1_12:7032098-7032224:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2703857421875	2	534.339175	1066.6638	-0.64994	-0.00034729	2.0676	0.0011048	1.4176	0.00075749	534.3400891222307	62.302	0.50709	62.043	61.705	62.212	-0.25824					27	12	3	0	0	0	0.03519	1	6944	6944		20.947	0	1	278220	+		37306	34773	25556	25609	42965	42965					0.1331323034808065
LALLVPLGW	9	Unmodified	_LALLVPLGW_					0	0	0		ENST00000284617.6_1_1:229460006-229460093:-|nuORF	ENST00000284617.6_1_1:229460006-229460093:-|nuORF	ENST00000284617.6_1_1:229460006-229460093:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7815246582031	2	491.310221	980.605889	-0.61925	-0.00030424	-2.6837	-0.0013185	-3.3029	-0.0016228	491.30891684393305	62.85	0.40045	62.85	62.69	63.09	0					17	9	2	0	0	0	0.024389	1	7307	7307		29.842	6.7991	1	502280			37307	11746	25557	25610	42966	42966					0.11481013213324331
LALMHINL	8	Unmodified	_LALMHINL_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.23114013671875	2	462.770406	923.526258	-1.0022	-0.0004638	3.8454	0.0017795	2.8432	0.0013157	462.7725811438176	35.601	0.57979	35.579	35.271	35.851	-0.021763					31	14	4	0	0	0	0.027866	1	2705	2705		62.978	41.276	1	463150			37308	1672	25558	25611	42967	42967					0.06143623267666953
LALMHINL	8	Unmodified	_LALMHINL_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2316589355469	2	462.770406	923.526258	0.10816	5.0051E-05	3.6131	0.001672	3.7213	0.0017221	462.7720089231088	35.69	0.79541	35.734	35.343	36.139	0.04406					30	20	2	0	0	0	0.027866	1	2677	2677		33.516	0	1	484810			37309	1672	25558	25611	42968	42968					0.06143623267666953
LALMRMTSI	9	Unmodified	_LALMRMTSI_					0	0	0		ENST00000491610.1_1_3:49064127-49064190:-|nuORF	ENST00000491610.1_1_3:49064127-49064190:-|nuORF	ENST00000491610.1_1_3:49064127-49064190:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.3056640625	2	518.288105	1034.56166	-0.11944	-6.1903E-05	-3.2823	-0.0017012	-3.4018	-0.0017631	518.2862830747931	77.331	0.55008	77.331	77.082	77.632	0					18	12	2	0	0	0	0.024263	1	9521	9521		51.335	12.314	1	127780			37310	15464	25559	25612	42969	42969					0.04575917733177448
LALNFMYI	8	Unmodified	_LALNFMYI_					0	0	0			REV__OPRL1|p.I90M|1|0.26|ENSG00000125510|chr20:64097838-64097838|C/G|missense_variant	REV__OPRL1|p.I90M|1|0.26|ENSG00000125510|chr20:64097838-64097838|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.72833251953125	2	492.764789	983.515025	-0.38465	-0.00018954	-4.469	-0.0022022	-4.8537	-0.0023917	492.7624814676211	63.209	0.64365	62.988	62.691	63.335	-0.22097					25	15	2	0	0	0	0.027866	1	7162	7162		37.028	15.069	1	490220	+		37311	37304	25560	25613	42970	42970					0.022608011735314903
LALNNLQKA	9	Unmodified	_LALNNLQKA_					0	0	0			REV__ENSG00000104892|ENST00000391946|KLC3	REV__ENSG00000104892|ENST00000391946|KLC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.72833251953125	2	492.795466	983.57638	-0.40872	-0.00020141	-0.56084	-0.00027638	-0.96955	-0.00047779	492.7951598597237	63.33	0.77495	63.109	62.817	63.592	-0.22097					30	19	2	0	0	0	0.024354	1	7162	7162		38.806	8.3025	1	586420	+		37312	21480	25561	25614	42971	42971					0.08393449197183145
LALNTHSRRQ	10	Unmodified	_LALNTHSRRQ_					0	0	0		nc|ENSG00000230223|P0DMR3|ATXN8OS	nc|ENSG00000230223|P0DMR3|ATXN8OS	nc|ENSG00000230223|P0DMR3|ATXN8OS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	597.8574829101562	2	598.336353	1194.65815	-0.9595	-0.0005741	-2.6159	-0.0015652	-3.5754	-0.0021393	598.3345876947411	91.296	0.71346	91.284	91.034	91.748	-0.012383					33	16	3	0	0	0	0.03519	1	11496	11496		24.519	0	1	313560			37313	18744	25562	25615	42972	42972					0.0686094460897948
LALNTKKI	8	Unmodified	_LALNTKKI_					0	0	0			REV__nc|ENSG00000100678|P57103-7|SLC8A3;REV__ENSG00000118160|ENST00000236877|SLC8A2	REV__nc|ENSG00000100678|P57103-7|SLC8A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26910400390625	2	450.797478	899.580402	-0.30418	-0.00013713	1.1815	0.00053264	0.87736	0.00039551	450.7971515910834	38.867	0.6966	38.768	38.358	39.054	-0.098755					27	18	3	0	0	0	0.027866	1	3231	3231		82.305	8.3303	1	439620	+		37314	36522;22389	25563	25616	42973	42973					0.12659538690888894
LALPCFLS	8	Unmodified	_LALPCFLS_					0	0	0			REV__ENST00000564661.1_1_16:766452-766668:+|nuORF	REV__ENST00000564661.1_1_16:766452-766668:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.2533874511719	2	432.238407	862.462261	0.078047	3.3735E-05	-1.5432	-0.00066703	-1.4651	-0.00063329	432.23703722158433	31.551	0.29721	31.31	31.149	31.446	-0.24109					14	7	3	0	0	0	0.027866	1	2083	2083		77.944	3.4272	1	177770	+		37315	35255	25564	25617	42974	42974					0.02552843110743197
LALPEMDI	8	Unmodified	_LALPEMDI_					0	0	0		ENST00000520584.5_1_8:144333229-144335235:+|nuORF	ENST00000520584.5_1_8:144333229-144335235:+|nuORF	ENST00000520584.5_1_8:144333229-144335235:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2540588378906	2	451.238604	900.462655	0.13436	6.0627E-05	3.6101	0.001629	3.7444	0.0016896	451.2400220193204	36.832	0.35322	36.768	36.588	36.941	-0.063385					10	8	2	0	0	0	0.027866	1	2921	2921		35.201	1.6851	1	60054			37316	15987	25565	25618	42975	42975					0.008442180399129029
LALPHSLQP	9	Unmodified	_LALPHSLQP_					0	0	0		ENST00000480825.6_1_1:36933583-36933964:-|nuORF	ENST00000480825.6_1_1:36933583-36933964:-|nuORF	ENST00000480825.6_1_1:36933583-36933964:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7769775390625	2	488.284734	974.554916	-0.80625	-0.00039368	3.8363	0.0018732	3.0301	0.0014795	488.2864826814727	61.768	0.36089	61.838	61.628	61.989	0.069504					12	9	2	0	0	0	0.023817	1	7048	7048		42.396	0	1	171840			37317	15213	25566	25619	42976	42976					0.06662064168483539
LALPLTIY	8	Unmodified	_LALPLTIY_					0	0	0			REV__ENSG00000143418|ENST00000368954|CERS2	REV__ENSG00000143418|ENST00000368954|CERS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2477722167969	2	452.281129	902.547705	-0.22174	-0.00010029	0.81032	0.00036649	0.58859	0.00026621	452.28115803185	33.388	0.20745	33.388	33.213	33.421	0					8	5	3	0	0	0	0.027866	1	2399	2399		41.208	24.503	1	354300	+		37318	24245	25567	25620	42977	42977					0.09253331568049816
LALPPPVPLV	10	Unmodified	_LALPPPVPLV_					0	0	0			REV__ENST00000368921.4_1_1:151031209-151031551:+|nuORF	REV__ENST00000368921.4_1_1:151031209-151031551:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799377441406	2	508.331153	1014.64775	-0.67562	-0.00034344	4.344	0.0022082	3.6684	0.0018648	508.333448790345	47.893	0.24717	47.96	47.87	48.117	0.066795					10	6	2	0	0	0	0.03519	1	4781	4781		19.36	11.67	1	146520	+		37319	31073	25568	25621	42978	42978					0.1410156890184453
LALPPTLLL	9	Unmodified	_LALPPTLLL_					0	0	0			REV__ENSG00000183128|ENST00000369783|CALHM3	REV__ENSG00000183128|ENST00000369783|CALHM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2601013183594	2	475.817879	949.621205	-0.22098	-0.00010515	2.5339	0.0012057	2.3129	0.0011005	475.8187731553354	40.674	1.0561	40.697	40.162	41.219	0.023003					40	29	2	0	0	0	0.024541	1	3533	3533		28.254	0	1	141590	+		37320	27542	25569	25622	42979	42979					0.1443788001053008
LALPVLPVLK	10	Unmodified	_LALPVLPVLK_					0	0	0			REV__ENST00000225964.9_1_17:48265286-48266811:-|nuORF	REV__ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8076171875	2	531.867903	1061.72125	-0.67362	-0.00035828	-3.3119	-0.0017615	-3.9855	-0.0021198	531.8655025551635	47.816	0.18975	47.663	47.606	47.795	-0.153					7	5	2	0	0	0	0.03519	1	4801	4801		11.511	4.3177	1	119430	+		37321	29378	25570	25623	42980	42980					0.19286117344313425
LALQLGCIAL	10	Unmodified	_LALQLGCIAL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF;ENST00000534072.1_1_8:145139936-145140713:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7643127441406	2	507.804445	1013.59434	-0.91168	-0.00046296	3.784	0.0019215	2.8723	0.0014586	507.80639460678884	39.194	0.49727	39.218	39.028	39.526	0.023727					32	13	3	0	0	0	0.03519	1	3302	3302		55.504	0	1	330240			37322	10056	25571	25624	42981	42981					0.08808448127660995
LALQPSSLC	9	Unmodified	_LALQPSSLC_					0	0	0		ENST00000448083.6_1_11:65660319-65660394:-|nuORF	ENST00000448083.6_1_11:65660319-65660394:-|nuORF	ENST00000448083.6_1_11:65660319-65660394:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.7535095214844	2	466.249503	930.484453	0.14778	6.8902E-05	2.8273	0.0013182	2.9751	0.0013871	466.2509137695333	21.515	0.48767	21.325	20.98	21.468	-0.19072					15	9	2	0	0	0	0.024506	1	630	630		30.504	1.3541	1	26909			37323	14478	25572	25625	42982	42982					0.0164302278848254
LALQRELK	8	Unmodified	_LALQRELK_					0	0	0			REV__ENSG00000105373|ENST00000246802|NOP53;REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENSG00000105373|ENST00000246802|NOP53	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.8056945800781	2	485.805834	969.597115	-0.23508	-0.0001142	0.022481	1.0921E-05	-0.2126	-0.00010328	485.8057380356337	35.006	0.74015	34.819	34.56	35.3	-0.18675					52	18	4	0	0	0	0.4075	1	2599	2599		96.19	2.184	1	1580700	+		37324	21519;35271	25573	25626	42983	42983					0.11110039576840336
LALRALPEP	9	Unmodified	_LALRALPEP_					0	0	0			REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7814025878906	2	490.300384	978.586216	0.02286	1.1208E-05	0.34207	0.00016772	0.36493	0.00017893	490.3000081393165	62.777	0.75203	62.831	62.515	63.267	0.054104					42	18	3	0	0	0	0.024381	1	7200	7200		29.15	0	1	2933200	+		37325	22894	25574	25627	42984	42984					0.09606637202546153
LALRFYEA	8	Unmodified	_LALRFYEA_					0	0	0			REV__ENST00000466482.5_1_3:98489996-98501720:+|nuORF	REV__ENST00000466482.5_1_3:98489996-98501720:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7684631347656	2	491.77146	981.528367	-0.12943	-6.3649E-05	-4.2958	-0.0021125	-4.4252	-0.0021762	491.7693769597821	42.365	1.0102	42.233	41.953	42.963	-0.1322					70	28	4	0	0	0	0.29372	1	3898	3898		114.59	6.4983	1	9290900	+		37326	20280	25575	25628	42985	42985					0.036863752771296276
LALRLCAW	8	Unmodified	_LALRLCAW_					0	0	0		ENST00000445816.5_1_15:44085983-44086585:+|nuORF;ENST00000381359.5_2_15:44085983-44086238:+|nuORF	ENST00000445816.5_1_15:44085983-44086585:+|nuORF	ENST00000445816.5_1_15:44085983-44086585:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2476806640625	2	473.270573	944.526593	0.92515	0.00043784	0.60561	0.00028662	1.5308	0.00072446	473.27072961781795	51.463	0.75766	51.463	50.81	51.568	0					34	20	2	0	0	0	0.027866	1	5377	5377		62.978	18.447	1	218440			37327	13339	25576	25629	42986	42986					0.05211042987525616
LALRLLLL	8	Unmodified	_LALRLLLL_					0	0	0			REV__ENST00000302279.7_1_8:42940441-42940672:+|nuORF	REV__ENST00000302279.7_1_8:42940441-42940672:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7720031738281	2	462.833863	923.653173	0.041748	1.9322E-05	1.9934	0.00092261	2.0351	0.00094193	462.83500342206383	23.177	0.11648	23.253	23.156	23.272	0.076241					4	2	2	0	0	0	0.027866	1	838	838		13.775	0	1	38441	+		37328	30073	25577	25630	42987	42987					0.18829292484338112
LALRNCLLT	9	Unmodified	_LALRNCLLT_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3;ENST00000573441.1_1_17:79096339-79098810:-|nuORF;nc|ENSG00000181409|Q6ZMQ8-3|AATK;ENSG00000181409|ENST00000326724|AATK	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8019104003906	2	508.799694	1015.58484	-0.65511	-0.00033332	0.55638	0.00028309	-0.098724	-5.0231E-05	508.799990688851	91.112	0.53634	90.989	90.834	91.371	-0.12341					18	12	2	0	0	0	0.024381	1	11160	11160		37.159	10.466	1	92912			37329	5550	25578	25631	42988	42988					0.07766679842154645
LALRRGKVK	9	Unmodified	_LALRRGKVK_					0	0	0		ENST00000553505.1_1_14:24044793-24046767:-|nuORF;ENSG00000092051|ENST00000356300|JPH4	ENST00000553505.1_1_14:24044793-24046767:-|nuORF	ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2413330078125	2	520.856193	1039.69783	0.23238	0.00012103	1.7766	0.00092535	2.009	0.0010464	520.8570516055489	75.851	0.5356	75.676	75.389	75.925	-0.17548					28	13	3	0	0	0	0.024541	1	9015	9015		10.866	7.4555	1	265270			37330	1975	25579	25632	42989	42989					0.17957116350362412
LALSADKRN	9	Unmodified	_LALSADKRN_					0	0	0		ENSG00000169895|ENST00000380155|SYAP1	ENSG00000169895|ENST00000380155|SYAP1	ENSG00000169895|ENST00000380155|SYAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7945251464844	2	494.282723	986.550893	0.71553	0.00035367	-3.7639	-0.0018604	-3.0484	-0.0015068	494.2803273066156	59.677	0.19522	59.48	59.38	59.575	-0.19742					6	4	2	0	0	0	0.024427	1	6594	6594		42.396	9.5837	1	67695			37331	7986	25580	25633	42990	42990					0.05707974674749039
LALSEAEH	8	Unmodified	_LALSEAEH_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77984619140625	2	435.2218	868.429047	0.48729	0.00021208	0.061162	2.6619E-05	0.54845	0.0002387	435.2216919879312	40.24	3.8546	40.24	39.148	43.002	0					215	109	3	0	0	0	0.027866	1	3500	3500		52.299	9.903	1	1092700	+		37332	36915	25581	25634	42991	42991					-0.01043067407624676
LALSEAEH	8	Unmodified	_LALSEAEH_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7798156738281	2	435.2218	868.429047	0.12312	5.3583E-05	0.48275	0.0002101	0.60586	0.00026368	435.2218682804499	40.311	4.0488	40.199	38.969	43.018	-0.11223					275	113	3	0	0	0	0.027866	1	3455	3455		83.287	11.909	1	1050700	+		37333	36915	25581	25634	42992	42992					-0.01043067407624676
LALSFFITV	9	Unmodified	_LALSFFITV_					0	0	0		ENST00000258739.8_1_7:6502525-6502597:-|nuORF	ENST00000258739.8_1_7:6502525-6502597:-|nuORF	ENST00000258739.8_1_7:6502525-6502597:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3108215332031	2	505.799686	1009.58482	-0.67404	-0.00034093	-3.466	-0.0017531	-4.1401	-0.002094	505.7979819934542	48.413	0.48161	48.26	48.023	48.505	-0.15301					36	13	4	0	0	0	0.023596	1	4936	4936		44.117	0	1	571610			37334	11427	25582	25635	42993	42993					0.08041003113794432
LALSFFITV	9	Unmodified	_LALSFFITV_					0	0	0		ENST00000258739.8_1_7:6502525-6502597:-|nuORF	ENST00000258739.8_1_7:6502525-6502597:-|nuORF	ENST00000258739.8_1_7:6502525-6502597:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3110046386719	2	505.799686	1009.58482	-0.39431	-0.00019944	-3.6407	-0.0018415	-4.035	-0.0020409	505.79760839830936	48.096	0.44633	48.163	47.97	48.417	0.066795					20	11	2	0	0	0	0.024323	1	4847	4847		44.117	5.3107	1	490100			37335	11427	25582	25635	42994	42994					0.08041003113794432
LALSFQEKA	9	Unmodified	_LALSFQEKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7822570800781	2	503.782025	1005.5495	0.2989	0.00015058	-0.12751	-6.4238E-05	0.17139	8.6341E-05	503.7818975797657	88.518	0.80729	88.518	88.212	89.02	0					34	17	3	0	0	0	0.18915	1	11178	11178		90.777	3.0224	1	688160			37336	2247;11034	25583	25636	42995	42995					0.046943405859906306
LALSKKRL	8	Unmodified	_LALSKKRL_					0	0	0			REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF;REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P	REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2502746582031	2	464.818744	927.622936	-0.58163	-0.00027035	-0.48164	-0.00022387	-1.0633	-0.00049423	464.81780008369526	48.094	0.19866	47.94	47.858	48.057	-0.15301					8	5	2	0	0	0	0.027866	1	4855	4855		35.201	9.7505	1	159890	+		37337	32382;37204	25584	25637	42996	42996					0.15622933819133777
LALSLAQTK	9	Unmodified	_LALSLAQTK_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.79266357421875	2	472.792392	943.570232	1.0065	0.00047585	-1.2028	-0.00056868	-0.19635	-9.2832E-05	472.7918087186321	18.478	0.88958	18.321	18.099	18.989	-0.15637					43	17	5	0	0	0	0.85329	1	324	324		35.618	0	1	2282300			37338	4174	25585	25638	42997	42997					0.09618930965655181
LALSLPAF	8	Unmodified	_LALSLPAF_					0	0	0		ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	ENST00000505912.1_1_4:113332098-113335446:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.89471435546875	2	416.252372	830.49019	-0.86058	-0.00035822	-2.8046	-0.0011674	-3.6652	-0.0015256	416.2510134012395	30.163	0.54847	29.985	29.655	30.203	-0.17817					17	12	2	0	0	0	0.027866	1	1888	1888		20.482	0	1	78509			37339	15733	25586	25639	42998	42998					0.06816489362461198
LALSQSHNI	9	Unmodified	_LALSQSHNI_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7693176269531	2	491.769448	981.524344	-0.19867	-9.7698E-05	-0.51694	-0.00025422	-0.71561	-0.00035191	491.7692246153905	42.517	1.0922	42.287	41.965	43.057	-0.23029					81	28	5	0	0	0	0.15029	1	3839	3839		99.375	14.459	1	12975000	+		37340	24143	25587	25640	42999	42999					0.03284285783422547
LALSRRSHA	9	Unmodified	_LALSRRSHA_					0	0	0		nc|ENSG00000174516|Q8N2H9-4|PELI3;nc|ENSG00000174516|Q8N2H9-2|PELI3;ENSG00000174516|ENST00000320740|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8154602050781	2	505.796332	1009.57811	0.42348	0.0002142	-3.9946	-0.0020205	-3.5711	-0.0018063	505.7946366101153	68.303	0.36964	68.048	67.74	68.109	-0.25516					13	8	2	0	0	0	0.024436	1	7893	7893		47.916	1.9636	1	122720			37341	8479	25588	25641	43000	43000					0.07370503005790852
LALSSFTN	8	Unmodified	_LALSSFTN_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2646484375	2	426.726718	851.438883	-0.29221	-0.00012469	0.60392	0.00025771	0.31171	0.00013302	426.72703368700763	53.815	1.2556	53.815	53.302	54.558	0					50	35	2	0	0	0	0.027866	1	5881	5881		30.504	0	1	387090	+		37342	24874	25589	25642	43001	43001					0.007221205977543832
LALSWVVSI	9	Unmodified	_LALSWVVSI_					0	0	0		ENSG00000280094|ENST00000623530|OR1B1	ENSG00000280094|ENST00000623530|OR1B1	ENSG00000280094|ENST00000623530|OR1B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2947692871094	2	494.29731	986.580068	0.043534	2.1519E-05	-4.2118	-0.0020819	-4.1683	-0.0020604	494.29516466043117	53.178	0.57304	53.178	52.901	53.474	0					59	15	5	0	0	0	0.43973	1	5738	5738		63.306	7.8021	1	6117100			37343	11077	25590	25643	43002	43002					0.08624118971033568
LALSWVVSI	9	Unmodified	_LALSWVVSI_					0	0	0		ENSG00000280094|ENST00000623530|OR1B1	ENSG00000280094|ENST00000623530|OR1B1	ENSG00000280094|ENST00000623530|OR1B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7385559082031	2	494.29731	986.580068	-0.09128	-4.512E-05	-4.0569	-0.0020053	-4.1482	-0.0020504	494.2951757967981	53.328	0.80251	53.138	52.793	53.596	-0.18981					56	21	4	0	0	0	0.024262	1	5586	5586		47.916	0	1	2389600			37344	11077	25590	25643	43003	43003					0.08624118971033568
LALTKNSL	8	Unmodified	_LALTKNSL_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2324523925781	2	430.26601	858.517468	-0.5856	-0.00025196	0.72197	0.00031064	0.13637	5.8676E-05	430.26618084548346	25.766	0.55462	25.731	25.432	25.987	-0.034397					17	12	2	0	0	0	0.027866	1	1269	1269		65.803	2.4969	1	51454			37345	5748	25591	25644	43004	43004					0.08254972902852842
LALTLRKL	8	Unmodified	_LALTLRKL_					0	0	0		ENST00000428765.1_1_22:42834211-42836504:+|nuORF	ENST00000428765.1_1_22:42834211-42836504:+|nuORF	ENST00000428765.1_1_22:42834211-42836504:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2722473144531	2	464.32112	926.627687	-0.12005	-5.5741E-05	0.7606	0.00035316	0.64055	0.00029742	464.3216073381142	19.638	0.24279	19.52	19.397	19.64	-0.11872					5	4	2	0	0	0	0.027866	1	439	439		44.117	6.9577	1	12703			37346	14134	25592	25645	43005	43005					0.16143817961904006
LALTRLEI	8	Unmodified	_LALTRLEI_					0	0	0		ENST00000443503.6_2_3:38023988-38024135:+|nuORF	ENST00000443503.6_2_3:38023988-38024135:+|nuORF	ENST00000443503.6_2_3:38023988-38024135:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2501525878906	2	464.794935	927.575317	-0.57558	-0.00026753	-1.2263	-0.00056999	-1.8019	-0.00083751	464.794372707257	48.094	0.26481	47.94	47.827	48.091	-0.15301					10	7	2	0	0	0	0.027866	1	4867	4867		42.474	7.2737	1	108130			37347	14399	25593	25646	43006	43006					0.10863234828264012
LALTRLEIGG	10	Unmodified	_LALTRLEIGG_					0	0	0		ENST00000443503.6_2_3:38023988-38024135:+|nuORF	ENST00000443503.6_2_3:38023988-38024135:+|nuORF	ENST00000443503.6_2_3:38023988-38024135:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8172607421875	2	521.816399	1041.61824	-1.1974	-0.00062484	1.4402	0.0007515	0.24274	0.00012667	521.8173670224853	64.635	0.91329	64.635	64.347	65.26	0					83	24	5	0	0	0	0.54901	1	7651	7651		82.75	3.0379	1	8817100			37348	14399	25594	25647	43007	43007					0.09910004885705348
LALTRLEIGG	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LALTRLEIGG_					1	0	0		ENST00000443503.6_2_3:38023988-38024135:+|nuORF	ENST00000443503.6_2_3:38023988-38024135:+|nuORF	ENST00000443503.6_2_3:38023988-38024135:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.8072509765625	2	542.821681	1083.62881	-0.48216	-0.00026173	3.7861	0.0020552	3.304	0.0017935	542.823682207012	101.87	1.1772	101.86	101.58	102.76	-0.0054398					60	26	4	0	0	0	0.03519	1	12942	12942		47.657	6.2307	1	2155400			37349	14399	25594	25648	43008	43008					0.09033987540146882
LALTSLQSL	9	Unmodified	_LALTSLQSL_					0	0	0			REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2851257324219	2	473.2844	944.554247	-0.36349	-0.00017204	0.70143	0.00033197	0.33793	0.00015994	473.28462407316596	53.571	0.45845	53.434	53.171	53.63	-0.13616					38	12	4	0	0	0	0.014988	1	5629	5629		161.9	3.8236	1	5434200	+		37350	33260	25595	25649	43009	43009					0.079752247287729
LALTSLQSL	9	Unmodified	_LALTSLQSL_					0	0	0			REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2838134765625	2	473.2844	944.554247	-0.40604	-0.00019217	0.62187	0.00029432	0.21583	0.00010215	473.28458733739893	53.664	0.47886	53.467	53.201	53.68	-0.19739					42	13	4	0	0	0	0.01452	1	5617	5617		186.09	5.1631	1	4629500	+		37351	33260	25595	25649	43010	43010					0.079752247287729
LALTSTHPNE	10	Unmodified	_LALTSTHPNE_					0	0	0			REV__nc|ENSG00000171385|Q9UK17-2|KCND3	REV__nc|ENSG00000171385|Q9UK17-2|KCND3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7969360351562	2	541.77747	1081.54039	0.50895	0.00027574	-4.0417	-0.0021897	-3.5328	-0.001914	541.7751503725636	77.774	0.97388	77.532	77.233	78.207	-0.24233					38	22	3	0	0	0	0.03519	1	9229	9229		49.536	23.473	1	388260	+		37352	36930	25596	25650	43011	43011					0.0028794722966267727
LALTVERLQ	9	Unmodified	_LALTVERLQ_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.8164672851562	2	521.816399	1041.61824	-0.73699	-0.00038457	0.40981	0.00021384	-0.32718	-0.00017073	521.8165205606402	64.901	1.0417	64.667	64.295	65.337	-0.2345					65	25	4	0	0	0	0.12602	2	7406	7379;7406		104.75	8.5561	1	4091600	+		37353	24144	25597	25651	43012;43013	43013					0.09910004885705348
LALTWVSR	8	Unmodified	_LALTWVSR_					0	0	0		ENST00000461684.5_1_3:184098935-184099814:+|nuORF	ENST00000461684.5_1_3:184098935-184099814:+|nuORF	ENST00000461684.5_1_3:184098935-184099814:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2811584472656	2	473.279452	944.544351	-0.41666	-0.0001972	-0.71183	-0.00033689	-1.1285	-0.00053409	473.2789550580845	53.88	1.2335	53.683	53.35	54.583	-0.19739					65	35	4	0	0	0	0.33369	1	5659	5659		106.42	0	1	2920200			37354	14687	25598	25652	43014	43014					0.06986081514037323
LALVAPEAAAM	11	Unmodified	_LALVAPEAAAM_					0	0	0			REV__ENSG00000066583|ENST00000173527|ISOC1	REV__ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2577514648438	2	528.791535	1055.56852	-1.319	-0.00069748	0.32466	0.00017168	-0.99436	-0.00052581	528.7917243107953	44.824	0.34261	44.675	44.488	44.83	-0.1488					22	9	3	0	0	0	0.024735	1	4270	4270		34.173	2.6427	1	228060	+		37355	20339	25599	25653	43015	43015					0.04295553885390291
LALVAPEAAAM	11	Unmodified	_LALVAPEAAAM_					0	0	0			REV__ENSG00000066583|ENST00000173527|ISOC1	REV__ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2572021484375	2	528.791535	1055.56852	-0.6768	-0.00035789	0.16375	8.659E-05	-0.51305	-0.0002713	528.7916360435725	44.853	0.3174	44.642	44.514	44.831	-0.21109					13	7	2	0	0	0	0.024759	1	4205	4205		42.396	19.354	1	129470	+		37356	20339	25599	25653	43016	43016					0.04295553885390291
LALVELTSL	9	Unmodified	_LALVELTSL_					0	0	0			REV__ENSG00000169418|ENST00000368680|NPR1	REV__ENSG00000169418|ENST00000368680|NPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7502746582031	2	479.794601	957.574648	-0.28967	-0.00013898	-3.4227	-0.0016422	-3.7124	-0.0017812	479.7931373014511	32.298	0.60267	32.361	32.125	32.728	0.062889					26	15	2	0	0	0	0.024412	1	2238	2238		40.573	16.069	1	535480	+		37357	26366	25600	25654	43017	43017					0.0941639538856407
LALVELTSL	9	Unmodified	_LALVELTSL_					0	0	0			REV__ENSG00000169418|ENST00000368680|NPR1	REV__ENSG00000169418|ENST00000368680|NPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.794601	957.574648	0.33129	0.00015895	-10.294	-0.0049389	-9.9626	-0.00478	479.7893071131557	32.561	0.87203	32.324	31.998	32.87	-0.23667	-0.065343	-0.0014532	NaN	23.042	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811340	+		37358	26366	25600	25654							0.0941639538856407
LALVELTSL	9	Unmodified	_LALVELTSL_					0	0	0			REV__ENSG00000169418|ENST00000368680|NPR1	REV__ENSG00000169418|ENST00000368680|NPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.794601	957.574648	0.30744	0.00014751	-10.476	-0.0050261	-10.168	-0.0048786	479.78931544786195	32.588	0.82682	32.396	32.118	32.944	-0.19261	0.0063515	-0.0016276	NaN	23.042	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762660	+		37359	26366	25600	25654							0.0941639538856407
LALVELTSL	9	Unmodified	_LALVELTSL_					0	0	0			REV__ENSG00000169418|ENST00000368680|NPR1	REV__ENSG00000169418|ENST00000368680|NPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.794601	957.574648	-0.060865	-2.9202E-05	-10.682	-0.005125	-10.742	-0.0051542	479.78907898545935	32.55	0.92422	32.392	32.121	33.046	-0.15772	0.0028107	-0.0018253	NaN	23.042	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	819110	+		37360	26366	25600	25654							0.0941639538856407
LALVFRIT	8	Unmodified	_LALVFRIT_					0	0	0		ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.7835998535156	2	466.80002	931.585488	0.21959	0.00010251	3.0331	0.0014159	3.2527	0.0015184	466.8015135214061	19.826	0.24562	19.665	19.529	19.774	-0.16079					10	4	3	0	0	0	0.027866	1	473	473		55.504	0	1	26987			37361	12989	25601	25655	43018	43018					0.11695842553513103
LALVLLMW	8	Unmodified	_LALVLLMW_					0	0	0			REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF	REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75018310546875	2	479.793349	957.572146	-0.98121	-0.00047078	2.5439	0.0012205	1.5627	0.00074976	479.7942895175096	30.132	0.33351	30.207	30.003	30.337	0.074316					12	7	3	0	0	0	0.027866	1	1841	1841		24.504	0	1	63921	+		37362	30731	25602	25656	43019	43019					0.0916626844991697
LALVPFLPHG	10	Unmodified	_LALVPFLPHG_					0	0	0			REV__ENST00000495167.3_1_17:15689952-15690237:+|nuORF	REV__ENST00000495167.3_1_17:15689952-15690237:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2413330078125	2	532.318577	1062.6226	-0.73227	-0.0003898	-3.5396	-0.0018842	-4.2719	-0.002274	532.3162349793552	34.004	0.22754	33.797	33.668	33.895	-0.20695					7	5	2	0	0	0	0.03519	1	2459	2459		54.765	22.81	1	73738	+		37363	33796	25603	25657	43020	43020					0.09379514099259723
LALVPPLKEL	10	Unmodified	_LALVPPLKEL_					0	0	0			REV__USP10|p.V683A|1|0.08|ENSG00000103194|chr16:84772590-84772590|T/C|missense_variant	REV__USP10|p.V683A|1|0.08|ENSG00000103194|chr16:84772590-84772590|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.8404541015625	2	546.854993	1091.69543	0.68191	0.00037291	3.1505	0.0017229	3.8324	0.0020958	546.8568845645086	99.707	0.28394	99.583	99.472	99.756	-0.12458					11	7	2	0	0	0	0.03519	1	12394	12394		37.159	1.5408	1	48564	+		37364	37763	25604	25658	43021	43021					0.15325223102036034
LALVPPLKEL	10	Unmodified	_LALVPPLKEL_					0	0	0			REV__USP10|p.V683A|1|0.08|ENSG00000103194|chr16:84772590-84772590|T/C|missense_variant	REV__USP10|p.V683A|1|0.08|ENSG00000103194|chr16:84772590-84772590|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.8399658203125	2	546.854993	1091.69543	-0.36614	-0.00020023	0.28	0.00015312	-0.086146	-4.7109E-05	546.8550413704584	99.764	0.18376	99.593	99.451	99.634	-0.17088					7	4	2	0	0	0	0.03519	1	12362	12362		42.396	1.618	1	81711	+		37365	37763	25604	25658	43022	43022					0.15325223102036034
LALVPQRAT	9	Unmodified	_LALVPQRAT_					0	0	0		nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7980041503906	2	484.798009	967.581465	1.4645	0.00071001	-2.4093	-0.001168	-0.94471	-0.00045799	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.55828	1	6706	6706		55.504	0	1	119110000			37366	18093	25605	25659	43023	43023					0.09637753059791976
LALVQANPSL	10	Unmodified	_LALVQANPSL_					0	0	0			REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3037109375	2	513.303124	1024.5917	0.82465	0.0004233	-1.293	-0.00066371	-0.46836	-0.00024041	513.3023142752752	63.089	1.542	63.144	62.801	64.343	0.054104					72	41	2	0	0	0	0.88896	1	7293	7293		54.776	1.8396	1	3150600	+		37367	21634	25606	25660	43024	43024					0.0803831599437217
LALVQLAR	8	Unmodified	_LALVQLAR_					0	0	0			REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF	REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.75579833984375	2	442.28982	882.565087	-0.059466	-2.6301E-05	0.16523	7.308E-05	0.10577	4.6779E-05	442.28965528133637	44.914	0.75587	44.958	44.688	45.444	0.043877					43	21	3	0	0	0	0.027866	1	4310	4310		42.474	8.9589	1	481550	+		37368	25278	25607	25661	43025	43025					0.11910671893701874
LALVRLEIS	9	Unmodified	_LALVRLEIS_					0	0	0			REV__ENST00000348370.8_1_15:59387117-59387267:+|nuORF	REV__ENST00000348370.8_1_15:59387117-59387267:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.3194580078125	2	507.321317	1012.62808	-0.54474	-0.00027636	-2.8736	-0.0014578	-3.4183	-0.0017342	507.31970995936956	20.821	0.86604	20.716	20.473	21.339	-0.10477					33	17	3	0	0	0	1.0051	1	586	586		19.36	0	1	272150	+		37369	30715	25608	25662	43026	43026					0.1222719289107772
LALVRQQL	8	Unmodified	_LALVRQQL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.80145263671875	2	470.800552	939.58655	0.91385	0.00043024	-1.0985	-0.00051716	-0.18462	-8.6917E-05	470.7999261930246	51.078	0.68916	50.966	50.712	51.401	-0.11163					40	17	3	0	0	0	0.28298	2	5240	5227;5240		119.22	30.578	1	2284200			37370	4149	25609	25663	43027;43028	43028					0.11434056922405489
LALVRQQL	8	Unmodified	_LALVRQQL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.8016662597656	2	470.800552	939.58655	-0.0059846	-2.8175E-06	-0.18712	-8.8096E-05	-0.1931	-9.0913E-05	470.80032430457624	51.304	0.68852	51.028	50.778	51.467	-0.27643					47	17	4	0	0	0	0.23817	2	5248	5248;5262		134.12	41.928	1	2237300			37371	4149	25609	25663	43029;43030	43029					0.11434056922405489
LALVRQQL	8	Unmodified	_LALVRQQL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.8022155761719	2	470.800552	939.58655	0.61295	0.00028858	-0.87755	-0.00041315	-0.2646	-0.00012457	470.8000187493118	51.143	0.84124	50.963	50.723	51.564	-0.18071					50	21	4	0	0	0	0.28298	2	5231	5231;5244		119.22	21.748	1	2086300			37372	4149	25609	25663	43031;43032	43031					0.11434056922405489
LALVTLVPG	9	Unmodified	_LALVTLVPG_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.78814697265625	2	441.786579	881.558604	-0.21775	-9.62E-05	3.3208	0.0014671	3.103	0.0013709	441.78792845566716	42.96	0.76768	42.734	42.105	42.873	-0.22597					49	19	4	0	0	0	0.75282	1	3880	3880		42.474	7.2737	1	7360500	+		37373	21331	25610	25664	43033	43033					0.11308733942325944
LALVTLVPG	9	Unmodified	_LALVTLVPG_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7876892089844	2	441.786579	881.558604	-0.43648	-0.00019283	3.3822	0.0014942	2.9457	0.0013014	441.78796500551965	43.27	2.2731	43.044	42.833	45.106	-0.22597					132	61	5	0	0	0	0.96855	1	3929	3929		26.796	0	1	17296000	+		37374	21331	25610	25664	43034	43034					0.11308733942325944
LALVYLPE	8	Unmodified	_LALVYLPE_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2677001953125	2	459.270761	916.52697	-0.46173	-0.00021206	-3.3665	-0.0015461	-3.8282	-0.0017582	459.2691290493807	48.112	0.69985	48.015	47.557	48.257	-0.097553					46	18	3	0	0	0	0.94001	1	4777	4777		46.766	0.81448	1	4953900	+		37375	27265	25611	25665	43035	43035					0.06536741188358519
LALVYLPE	8	Unmodified	_LALVYLPE_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.26824951171875	2	459.270761	916.52697	0.086245	3.961E-05	-3.6576	-0.0016798	-3.5714	-0.0016402	459.2690827463652	48.255	1.7426	48.068	47.596	49.339	-0.18684					105	46	3	0	0	0	0.94001	1	4786	4786		46.766	2.3892	1	5330000	+		37376	27265	25611	25665	43036	43036					0.06536741188358519
LALWGRGL	8	Unmodified	_LALWGRGL_					0	0	0			REV__ENST00000487091.1_1_7:73790414-73795297:+|nuORF	REV__ENST00000487091.1_1_7:73790414-73795297:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2666931152344	2	443.268887	884.523222	-0.55397	-0.00024556	-4.0093	-0.0017772	-4.5633	-0.0020228	443.2670353906837	29.431	1.1385	29.509	29.202	30.341	0.078344					83	27	4	0	0	0	0.97521	1	1747	1747		41.208	0	1	3748000	+		37377	33601	25612	25666	43037	43037					0.07634116205190367
LALWRLCF	8	Unmodified	_LALWRLCF_					0	0	0			REV__ENSG00000166068|ENST00000299084|SPRED1	REV__ENSG00000166068|ENST00000299084|SPRED1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2859191894531	2	511.286223	1020.55789	-0.8468	-0.00043296	0.26278	0.00013435	-0.58402	-0.0002986	511.2863201369854	27.783	1.0552	27.783	27.435	28.49	0					64	26	4	0	0	0	0.94001	1	1551	1551		46.766	0	1	2592500	+		37378	25964	25613	25667	43038	43038					0.0484361602162835
LALWSPEVK	9	Unmodified	_LALWSPEVK_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7969970703125	2	521.800217	1041.58588	-0.60238	-0.00031432	-3.5669	-0.0018612	-4.1693	-0.0021755	521.7982725339358	56.436	0.8447	56.534	56.209	57.053	0.097893					42	23	3	0	0	0	0.43973	1	6224	6224		63.306	3.188	1	3434600			37379	4658	25614	25668	43039	43039					0.0667521748271156
LALYKYQF	8	Unmodified	_LALYKYQF_					0	0	0			REV__nc|ENSG00000145860|Q96MT1-4|RNF145	REV__nc|ENSG00000145860|Q96MT1-4|RNF145	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2957153320312	2	523.289485	1044.56442	-0.93171	-0.00048756	-0.31938	-0.00016713	-1.2511	-0.00065469	523.7909349741847	34.378	0.77481	34.378	33.777	34.552	0					40	19	3	0	0	0	0.027866	1	2469	2469		35.201	0	1	251920	+		37380	36754	25615	25669	43040	43040					0.04391832454007272
LAMASSLFRV	10	Unmodified	_LAMASSLFRV_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000576723.5_1_17:7843028-7852016:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8028564453125	2	547.804977	1093.5954	-0.82736	-0.00045323	-2.8804	-0.0015779	-3.7077	-0.0020311	547.8033288883533	45.367	1.2941	45.411	45.074	46.368	0.043877					102	37	6	0	0	0	0.64538	1	4352	4352		71.877	9.7701	1	3950600			37381	8006	25616	25670	43041	43041					0.05234662496582132
LAMASSLFRV	10	Unmodified	_LAMASSLFRV_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000576723.5_1_17:7843028-7852016:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.804977	1093.5954	-0.78727	-0.00043127	-2.9172	-0.0015981	-3.7045	-0.0020293	547.8032150110662	45.323	1.0837	45.323	45.006	46.09	0	-0.036591	-0.00015014	NaN	71.877	76	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3111400			37382	8006	25616	25670							0.05234662496582132
LAMDACYGI	9	Unmodified	_LAMDACYGI_					0	0	0		ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2776184082031	2	478.714439	955.414325	0.3626	0.00017358	0.2126	0.00010178	0.5752	0.00027536	478.714207733336	82.686	0.51598	82.686	82.406	82.922	0					21	11	2	0	0	0	0.024412	1	10316	10316		31.955	11.008	1	140250			37383	9299	25617	25671	43042	43042					-0.0651659887163305
LAMELAQSI	9	Unmodified	_LAMELAQSI_					0	0	0			REV__nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	REV__nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.7797546386719	2	488.26261	974.510668	-0.18322	-8.946E-05	0.27897	0.00013621	0.095746	4.6749E-05	488.2626007027461	55.433	0.77974	55.217	54.857	55.637	-0.21551					37	21	2	0	0	0	0.022587	1	5953	5953		54.776	0	1	3763300	+		37384	24534	25618	25672	43043	43043					0.022392919599724337
LAMGEKFTPY	10	Unmodified	_LAMGEKFTPY_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.2099609375	2	578.788992	1155.56343	-0.86728	-0.00050197	-1.042	-0.00060308	-1.9093	-0.0011051	578.7879861338573	55.862	0.28476	55.705	55.572	55.856	-0.15656					11	7	2	0	0	0	0.03519	1	6013	6013		76.774	16.48	1	81235	+		37385	22450	25619	25673	43044	43044					-0.008127499772172087
LAMGFLPII	9	Unmodified	_LAMGFLPII_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7911682128906	2	487.790807	973.56706	-0.4369	-0.00021311	0.010937	5.335E-06	-0.42596	-0.00020778	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.80342	1	10311	10311		39.021	5.5059	1	2003200	+		37386	25129	25620	25674	43045	43045					0.07921964587308139
LAMGFLPII	9	Unmodified	_LAMGFLPII_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7909240722656	2	487.790807	973.56706	0.29152	0.0001422	-0.7053	-0.00034404	-0.41379	-0.00020184	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.93795	1	10295	10295		29.842	0	1	2091900	+		37387	25129	25620	25674	43046	43046					0.07921964587308139
LAMGVLCRSL	10	Unmodified	_LAMGVLCRSL_					0	0	0		ENSG00000185803|ENST00000643944|SLC52A2;ENSG00000132517|ENST00000254853|SLC52A1;ENST00000573674.1_1_17:4936254-4937771:-|nuORF	ENSG00000185803|ENST00000643944|SLC52A2;ENSG00000132517|ENST00000254853|SLC52A1	ENSG00000132517|ENST00000254853|SLC52A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.776611328125	2	531.793555	1061.57256	1.3022	0.00069248	0.69569	0.00036997	1.9978	0.0010624	531.7938097789653	82.857	0.8156	82.747	82.379	83.195	-0.11006					32	18	2	0	0	0	0.03519	1	10347	10347		84.916	2.675	1	310020			37388	4615;9477	25621	25675	43047	43047					0.04423320107480322
LAMLLLPL	8	Unmodified	_LAMLLLPL_					0	0	0			REV__ENST00000548116.5_1_1:28271947-28285346:+|nuORF	REV__ENST00000548116.5_1_1:28271947-28285346:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2589416503906	2	442.2879	882.561247	-0.32904	-0.00014553	-1.9079	-0.00084382	-2.2369	-0.00098935	442.28761280647774	27.401	0.50863	27.401	27.144	27.653	0					21	13	2	0	0	0	0.027866	1	1530	1530		33.493	8.989	1	414090	+		37389	23154	25622	25676	43048	43048					0.11526866075644193
LAMLSWGAPV	10	Unmodified	_LAMLSWGAPV_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2899780273438	2	522.78097	1043.54739	-0.36747	-0.00019211	0.43574	0.0002278	0.068271	3.5691E-05	522.7815551006474	57.128	0.34154	57.223	56.978	57.32	0.095306					11	8	2	0	0	0	0.03519	1	6295	6295		38.806	0	1	120610			37390	18827	25623	25677	43049	43049					0.027355885765246057
LAMPLKGQP	9	Unmodified	_LAMPLKGQP_					0	0	0			REV__ENST00000598095.5_1_19:49842746-49843241:+|nuORF	REV__ENST00000598095.5_1_19:49842746-49843241:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.777587890625	2	477.775688	953.536823	0.26524	0.00012673	2.8712	0.0013718	3.1365	0.0014985	477.77724843167783	27.381	2.813	27.381	26.447	29.26	0					206	70	5	0	0	0	0.4855	1	1487	1487		60.294	5.5176	1	85113000	+		37391	35815	25624	25678	43050	43050					0.05819605922113169
LAMPLKGQP	9	Unmodified	_LAMPLKGQP_					0	0	0			REV__ENST00000598095.5_1_19:49842746-49843241:+|nuORF	REV__ENST00000598095.5_1_19:49842746-49843241:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7774963378906	2	477.775688	953.536823	-0.080075	-3.8258E-05	3.1694	0.0015142	3.0893	0.001476	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.4855	1	1527	1527		60.294	5.5176	1	79837000	+		37392	35815	25624	25678	43051	43051					0.05819605922113169
LAMPWAALF	9	Unmodified	_LAMPWAALF_					0	0	0		ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2743835449219	2	510.272781	1018.53101	-0.40398	-0.00020614	3.3714	0.0017203	2.9674	0.0015142	510.2742571408655	75.673	0.7471	75.414	75.075	75.822	-0.25865					49	18	3	0	0	0	0.48384	1	8960	8960		60.404	7.4669	1	1790100			37393	11040	25625	25679	43052	43052					0.02248507410433831
LAMQGSTCL	9	Carbamidomethyl (C)	_LAMQGSTC(Carbamidomethyl (C))L_	LAMQGSTC(1)L		LAMQGSTC(66)L		0	1	0		CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.73028564453125	2	490.73062	979.446687	-0.4459	-0.00021882	-0.64945	-0.00031871	-1.0954	-0.00053752	490.7303710983228	27.599	1.2039	27.599	27.286	28.49	0					79	30	5	0	0	0	0.39228	1	1550	1550		66.429	7.6473	1	3769200			37394	617	25626	25680	43053	43053	9				-0.04385811468625889
LAMQGSTCL	9	Carbamidomethyl (C)	_LAMQGSTC(Carbamidomethyl (C))L_	LAMQGSTC(1)L		LAMQGSTC(79)L		0	1	0		CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.7304992675781	2	490.73062	979.446687	-0.44644	-0.00021908	-0.68062	-0.000334	-1.1271	-0.00055308	490.73033993046215	27.567	1.326	27.554	27.205	28.531	-0.012983					86	33	4	0	0	0	0.27161	1	1493	1493		79.451	8.1553	1	3762700			37395	617	25626	25680	43054	43054	9				-0.04385811468625889
LAMQGSTCL	9	Carbamidomethyl (C)	_LAMQGSTC(Carbamidomethyl (C))L_	LAMQGSTC(1)L		LAMQGSTC(88)L		0	1	0		CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	CYP4F8|p.E184Q|1|0.37|ENSG00000186526|chr19:15622243-15622243|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.7307434082031	2	490.73062	979.446687	-1.1477	-0.0005632	-0.059329	-2.9114E-05	-1.207	-0.00059231	490.7308505250967	27.257	1.2122	27.338	26.996	28.208	0.081291					77	31	5	0	0	0	0.20967	1	1410	1410		87.754	21.325	1	3910900			37396	617	25626	25680	43055	43055	9				-0.04385811468625889
LAMRSGSH	8	Unmodified	_LAMRSGSH_					0	0	0		ENST00000423056.2_1_1:11541363-11541645:+|nuORF	ENST00000423056.2_1_1:11541363-11541645:+|nuORF	ENST00000423056.2_1_1:11541363-11541645:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.73773193359375	2	429.716162	857.41777	-1.1741	-0.00050454	-0.42712	-0.00018354	-1.6012	-0.00068808	429.71614648195384	24.827	0.22342	24.78	24.623	24.847	-0.047148					6	4	2	0	0	0	0.027866	1	1087	1087		30.504	8.8013	1	22934			37397	14019	25627	25681	43056	43056					-0.016641679827330336
LAMSDLGLS	9	Unmodified	_LAMSDLGLS_					0	0	0		ENSG00000205497|ENST00000641898|OR51A4;ENSG00000205496|ENST00000380371|OR51A2	ENSG00000205497|ENST00000641898|OR51A4	ENSG00000205497|ENST00000641898|OR51A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.26605224609375	2	453.733686	905.452819	-0.27199	-0.00012341	-0.32444	-0.00014721	-0.59643	-0.00027062	453.7335398791898	62.974	0.3144	62.974	62.811	63.126	0					11	7	2	0	0	0	0.024487	1	7353	7353		24.203	3.7209	1	69559			37398	10431	25628	25682	43057	43057					-0.003689699654614742
LAMVAVRQVF	10	Unmodified	_LAMVAVRQVF_					0	0	0			REV__ENST00000572179.5_1_17:3623679-3627129:-|nuORF	REV__ENST00000572179.5_1_17:3623679-3627129:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3304443359375	2	567.328619	1132.64269	-0.4315	-0.0002448	2.1807	0.0012372	1.7492	0.00099239	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.1166	1	11511	11511		30.504	2.6214	1	13648000	+		37399	35392	25629	25683	43058	43058					0.08166941767581193
LAMVAVRQVF	10	Unmodified	_LAMVAVRQVF_					0	0	0			REV__ENST00000572179.5_1_17:3623679-3627129:-|nuORF	REV__ENST00000572179.5_1_17:3623679-3627129:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3301391601562	2	567.328619	1132.64269	-0.39327	-0.00022312	2.2588	0.0012815	1.8655	0.0010583	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0541	1	11406	11406		38.806	3.6541	1	19210000	+		37400	35392	25629	25683	43059	43059					0.08166941767581193
LANARRNL	8	Unmodified	_LANARRNL_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2776794433594	2	464.277775	926.540997	0.23403	0.00010866	-2.1417	-0.00099435	-1.9077	-0.0008857	464.27716576533726	49.217	0.82956	49.217	48.864	49.694	0					55	22	4	0	0	0	0.68535	1	5078	5078		68.485	9.7027	1	5579500	+		37401	28905	25630	25684	43060	43060					0.07478831460025503
LANDLLPL	8	Unmodified	_LANDLLPL_					0	0	0		ENST00000417976.1_1:144300541-144300598:-|nuORF	ENST00000417976.1_1:144300541-144300598:-|nuORF	ENST00000417976.1_1:144300541-144300598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.75921630859375	2	434.760561	867.506569	-0.22276	-9.6848E-05	-2.6899	-0.0011694	-2.9126	-0.0012663	434.7592793989391	21.612	1.8667	21.522	20.72	22.587	-0.090094					83	38	4	0	0	0	0.68164	1	675	675		68.787	0.30212	1	1189900			37402	13926	25631	25685	43061	43061					0.06751570528570028
LANEKITL	8	Unmodified	_LANEKITL_					0	0	0		ENSG00000168631|ENST00000462446|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	ENSG00000168631|ENST00000462446|MUCL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.27105712890625	2	451.271293	900.528032	0.24776	0.00011181	0.020768	9.3721E-06	0.26853	0.00012118	451.27117953070876	76.958	1.9129	76.971	75.865	77.777	0.013504					58	46	2	0	0	0	0.073916	1	9411	9411		167.82	0	1	1718100			37403	7848	25632	25686	43062	43062					0.07378955557271638
LANGALKVSVW	11	Unmodified	_LANGALKVSVW_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.3368530273438	2	579.337498	1156.66044	-0.091528	-5.3026E-05	0.40381	0.00023394	0.31228	0.00018092	579.3376457206588	83.931	0.73303	83.793	83.547	84.28	-0.13789					37	16	4	0	0	0	0.93459	1	10138	10138		49.536	1.8787	1	628890			37404	2279	25633	25687	43063	43063					0.08837980294106274
LANGMTMELS	10	Unmodified	_LANGMTMELS_					0	0	0			REV__ENSG00000170099|ENST00000341584|SERPINA6	REV__ENSG00000170099|ENST00000341584|SERPINA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2346801757812	2	533.74901	1065.48347	-0.097919	-5.2264E-05	2.8091	0.0014994	2.7112	0.0014471	533.7511763722545	58.421	0.84016	58.421	58.159	58.999	0					33	22	2	0	0	0	0.03519	1	6629	6629		56.721	28.839	1	654990	+		37405	26435	25634	25688	43064	43064					-0.046655596427171986
LANIARAMP	9	Unmodified	_LANIARAMP_					0	0	0		ENST00000361908.7_1_3:193343950-193353210:+|nuORF	ENST00000361908.7_1_3:193343950-193353210:+|nuORF	ENST00000361908.7_1_3:193343950-193353210:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7774963378906	2	478.770937	955.527321	-0.15722	-7.527E-05	1.9356	0.00092671	1.7784	0.00085144	478.7717586284635	27.683	0.22754	27.67	27.572	27.799	-0.012983					10	5	2	0	0	0	0.024412	1	1527	1527		40.573	8.6178	1	278610			37406	12809	25635	25689	43065	43065					0.04777837636584081
LANKKCGPMS	10	Unmodified	_LANKKCGPMS_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7550659179688	2	524.767537	1047.52052	0.80463	0.00042224	-0.94938	-0.0004982	-0.14475	-7.5961E-05	525.2682535005492	36.943	0.23873	36.734	36.645	36.883	-0.2092					7	5	2	0	0	0	0.03519	1	2910	2910		25.574	0	1	110570	+		37407	27906	25636	25690	43066	43066					-0.001338433062983313
LANKPCFSL	9	Unmodified	_LANKPCFSL_					0	0	0			REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF	REV__ENST00000461731.5_1_2:220094544-220099084:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2513122558594	2	496.76532	991.516088	0.45005	0.00022357	-0.69343	-0.00034447	-0.24337	-0.0001209	496.7653397652978	61.412	0.72561	61.412	61.032	61.758	0					29	18	2	0	0	0	0.02435	1	7066	7066		42.396	16.946	1	252600	+		37408	32883	25637	25691	43067	43067					0.01999015542446614
LANLLNSNY	9	Unmodified	_LANLLNSNY_					0	0	0		OR8H2|p.T88N|1|0.09|ENSG00000181767|chr11:56105305-56105305|C/A|missense_variant	OR8H2|p.T88N|1|0.09|ENSG00000181767|chr11:56105305-56105305|C/A|missense_variant	OR8H2|p.T88N|1|0.09|ENSG00000181767|chr11:56105305-56105305|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.802734375	2	511.269281	1020.52401	-0.49253	-0.00025181	-1.0173	-0.00052013	-1.5099	-0.00077195	511.26907430169547	52.28	0.12389	52.372	52.28	52.404	0.091942					4	2	2	0	0	0	0.024405	1	5516	5516		44.117	0	1	45629			37409	18928	25638	25692	43068	43068					0.014568660635632114
LANLSFLE	8	Unmodified	_LANLSFLE_					0	0	0		ENSG00000221813|ENST00000641698|OR6B1	ENSG00000221813|ENST00000641698|OR6B1	ENSG00000221813|ENST00000641698|OR6B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.7497863769531	2	453.750193	905.485833	-0.37884	-0.0001719	0.81639	0.00037044	0.43755	0.00019854	453.75029638720855	81.561	1.0232	81.585	81.248	82.271	0.023911					72	24	4	0	0	0	0.50717	1	10074	10074		84.916	0	1	2271500			37410	10609	25639	25693	43069	43069					0.02930980148892104
LANLWQYN	8	Unmodified	_LANLWQYN_					0	0	0		nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	nc|ENSG00000184363|Q9Y446-2|PKP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.3155822753906	2	511.258717	1020.50288	-0.43246	-0.0002211	-3.6471	-0.0018646	-4.0796	-0.0020857	511.2567516753119	40.058	0.7196	39.908	39.433	40.153	-0.1497					35	18	3	0	0	0	0.027866	1	3475	3475		44.531	21.489	1	517530			37411	9330	25640	25694	43070	43070					-0.006550992453071558
LANNNLQT	8	Unmodified	_LANNNLQT_					0	0	0		nc|ENSG00000108231|O95970-2|LGI1;ENST00000520124.5_1_8:22005675-22011752:-|nuORF;nc|ENSG00000108231|O95970-3|LGI1;nc|ENSG00000168481|Q8N145-2|LGI3;ENSG00000168481|ENST00000306317|LGI3;ENSG00000108231|ENST00000371418|LGI1	nc|ENSG00000108231|O95970-2|LGI1	nc|ENSG00000108231|O95970-2|LGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.2689208984375	2	444.232699	886.450845	-0.097825	-4.3457E-05	0.84718	0.00037634	0.74935	0.00033289	444.23283882661804	28.403	0.78527	28.484	27.871	28.657	0.080811					26	18	2	0	0	0	0.027866	1	1610	1610		29.15	4.9468	1	135130			37412	2883	25641	25695	43071	43071					0.0030773734093827443
LANNNLQT	8	Unmodified	_LANNNLQT_					0	0	0		nc|ENSG00000108231|O95970-2|LGI1;ENST00000520124.5_1_8:22005675-22011752:-|nuORF;nc|ENSG00000108231|O95970-3|LGI1;nc|ENSG00000168481|Q8N145-2|LGI3;ENSG00000168481|ENST00000306317|LGI3;ENSG00000108231|ENST00000371418|LGI1	nc|ENSG00000108231|O95970-2|LGI1	nc|ENSG00000108231|O95970-2|LGI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	444.232699	886.450845	-1.2547	-0.00055737	1.1179	0.00049661	-0.13678	-6.0762E-05	444.23354942123325	28.552	0.20076	28.307	28.162	28.363	-0.24524	-0.19688	0.00044555	NaN	29.15	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24995			37413	2883	25641	25695							0.0030773734093827443
LANQWQHS	8	Unmodified	_LANQWQHS_					0	0	0		ENSG00000105467|ENST00000344846|SYNGR4	ENSG00000105467|ENST00000344846|SYNGR4	ENSG00000105467|ENST00000344846|SYNGR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7684631347656	2	492.238316	982.462078	-0.079108	-3.894E-05	-0.98542	-0.00048506	-1.0645	-0.000524	492.2377315487813	42.513	0.27738	42.381	42.251	42.528	-0.1322					9	7	2	0	0	0	0.027866	1	3898	3898		85.359	35.918	1	50681			37414	2679	25642	25696	43072	43072					-0.02985440564907549
LANRLALSVL	10	Unmodified	_LANRLALSVL_					0	0	0			REV__ENSG00000175336|ENST00000398189|APOF	REV__ENSG00000175336|ENST00000398189|APOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8033447265625	2	535.340041	1068.66553	-0.66795	-0.00035758	-0.38173	-0.00020435	-1.0497	-0.00056193	535.3402075157233	65.994	0.38424	66.025	65.774	66.159	0.030106					23	9	3	0	0	0	0.03519	1	7782	7782		40.778	1.5253	1	376410	+		37415	26942	25643	25697	43073	43073					0.13394284156697722
LANRRVHATL	10	Unmodified	_LANRRVHATL_					0	0	0			REV__ENSG00000110328|ENST00000227756|GALNT18	REV__ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.843505859375	2	575.843813	1149.67307	-0.31557	-0.00018172	-0.48164	-0.00027735	-0.79721	-0.00045907	575.843249217509	102.67	0.43951	102.54	102.28	102.72	-0.12666					29	9	4	0	0	0	1.0992	1	12764	12764		32.812	0	1	374640	+		37416	21852	25644	25698	43074	43074					0.10422436476983421
LANSIQADI	9	Unmodified	_LANSIQADI_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7555236816406	2	472.756007	943.497461	0.44422	0.00021001	-0.6329	-0.00029921	-0.18867	-8.9196E-05	472.7556908442252	42.904	1.5014	42.765	42.108	43.609	-0.13929					103	41	4	0	0	0	0.10174	1	3980	3980		110.12	3.4368	1	10041000	+		37417	25863	25645	25699	43075	43075					0.02345177172219337
LANSKHII	8	Unmodified	_LANSKHII_					0	0	0			REV__ENSG00000162105|ENST00000601538|SHANK2	REV__ENSG00000162105|ENST00000601538|SHANK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.76104736328125	2	448.271627	894.528701	-0.15172	-6.8012E-05	1.0221	0.00045816	0.87034	0.00039015	448.2720548705515	45.108	0.54623	45.152	44.966	45.512	0.043877					29	15	2	0	0	0	0.027866	1	4309	4309		18.324	0	1	359160	+		37418	25417	25646	25700	43076	43076					0.07721794997007692
LANVPLVPA	9	Unmodified	_LANVPLVPA_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.2636413574219	2	447.276378	892.538203	-0.16144	-7.2206E-05	-0.44613	-0.00019955	-0.60757	-0.00027175	447.27656727859534	45.864	0.27264	45.908	45.751	46.024	0.043877					10	7	2	0	0	0	0.024325	1	4439	4439		50.025	14.824	1	222300	+		37419	25190	25647	25701	43077	43077					0.08763563282514042
LANVQRRLS	9	Unmodified	_LANVQRRLS_					0	0	0			REV__CNTRL|p.D2282N|1|0.21|ENSG00000119397|chr9:121175114-121175114|G/A|missense_variant	REV__CNTRL|p.D2282N|1|0.21|ENSG00000119397|chr9:121175114-121175114|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2737426757812	2	528.817264	1055.61998	-0.91589	-0.00048434	-2.8382	-0.0015009	-3.7541	-0.0019852	528.8151376821598	47.463	0.20266	47.463	47.326	47.529	0					4	5	2	0	0	0	0.024436	1	4751	4751		23.042	9.5884	1	80764	+		37420	19507	25648	25702	43078	43078					0.09439058694329105
LAPAAVLW	8	Unmodified	_LAPAAVLW_					0	0	0		ENST00000379661.7_1_16:57790854-57790992:+|nuORF	ENST00000379661.7_1_16:57790854-57790992:+|nuORF	ENST00000379661.7_1_16:57790854-57790992:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.5302734375	2	420.752539	839.490525	-0.33032	-0.00013898	-0.23565	-9.915E-05	-0.56597	-0.00023813	420.7551752956398	23.099	0.64179	22.915	22.556	23.197	-0.18378					19	13	3	0	0	0	0.027866	1	900	900		24.504	0	1	32315			37421	13280	25649	25703	43079	43079					0.06435909082313174
LAPAELLLL	9	Unmodified	_LAPAELLLL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.80706787109375	2	476.807511	951.600469	0.38952	0.00018573	0.54876	0.00026165	0.93828	0.00044738	476.80740311039807	102.73	0.65042	102.73	102.39	103.04	0					32	15	3	0	0	0	0.55828	1	13161	13161		55.504	5.4797	1	363170			37422	7519	25650	25704	43080	43080					0.12273289630866202
LAPAFPPPL	9	Unmodified	_LAPAFPPPL_					0	0	0		PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant;ENSG00000143294|ENST00000271526|PRCC	PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant	PRCC|p.Q380Rfs*47|2|0.18|ENSG00000143294|chr1:156791744-156791744|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7722473144531	2	461.773471	921.53239	0.37183	0.0001717	-2.4841	-0.0011471	-2.1123	-0.00097538	461.7720283962125	98.317	1.1137	98.327	98.021	99.135	0.010239					49	25	3	0	0	0	0.80342	1	12540	12540		39.021	1.8624	1	743680			37423	5627	25651	25705	43081	43081					0.0684846477084875
LAPAGNQSA	9	Unmodified	_LAPAGNQSA_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.76153564453125	2	414.714142	827.413731	-0.31471	-0.00013051	4.0892	0.0016959	3.7745	0.0015653	414.71719945748976	87.93	0.46568	87.751	87.575	88.041	-0.17875					13	11	2	0	0	0	0.024294	1	10718	10718		37.159	11.709	1	111980	+		37424	21902	25652	25706	43082	43082					-0.006879342048137005
LAPALKWVL	9	Unmodified	_LAPALKWVL_					0	0	0			REV__ALDH1A3|p.C197W|1|0.27|ENSG00000184254|chr15:100894007-100894007|T/G|missense_variant	REV__ALDH1A3|p.C197W|1|0.27|ENSG00000184254|chr15:100894007-100894007|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.2652893066406	2	505.823495	1009.63244	-0.9941	-0.00050284	-3.492	-0.0017663	-4.4861	-0.0022692	505.82147703082285	62.908	0.53552	62.669	62.37	62.905	-0.23926					27	13	3	0	0	0	0.024436	1	7297	7297		38.806	0	1	590130	+		37425	19102	25653	25707	43083	43083					0.12800702104652828
LAPAPAPASAS	11	Unmodified	_LAPAPAPASAS_					0	0	0			REV__ENST00000367334.9_1_1:201104135-201104420:-|nuORF	REV__ENST00000367334.9_1_1:201104135-201104420:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7577209472656	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	1.018	1	13237	13237		32.812	3.6629	1	5421500	+		37426	31016	25654	25708	43084	43084					0.024854810348415413
LAPAPNKP	8	Unmodified	_LAPAPNKP_					0	0	0		ENST00000506459.1_1_4:33012907-33013108:-|nuORF	ENST00000506459.1_1_4:33012907-33013108:-|nuORF	ENST00000506459.1_1_4:33012907-33013108:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2324523925781	2	404.239796	806.465038	1.5782	0.00063799	2.5632	0.0010362	4.1415	0.0016741	404.24082979129804	85.527	0.75323	85.377	84.907	85.66	-0.14967					22	17	2	0	0	0	0.027866	1	10309	10309		19.36	1.0356	1	121420			37427	15741	25655	25709	43085	43085					0.05406434559893114
LAPAPPVY	8	Unmodified	_LAPAPPVY_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000568919.1_1_15:75722503-75722716:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.2549743652344	2	414.236722	826.45889	1.1296	0.00046792	-0.094763	-3.9254E-05	1.0348	0.00042867	414.23661620746793	96.789	0.39776	96.789	96.572	96.97	-3.0518E-05					14	8	2	0	0	0	0.027866	1	12254	12254		16.705	7.2344	1	46363			37428	7933	25656	25710	43086	43086					0.038719163283644775
LAPATDKL	8	Unmodified	_LAPATDKL_					0	0	0			REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.7615051269531	2	414.744911	827.475269	-0.29787	-0.00012354	-4.1283	-0.0017122	-4.4262	-0.0018357	414.7426162912017	87.894	0.24166	87.715	87.491	87.733	-0.17875					8	5	2	0	0	0	0.027866	1	10694	10694		40.573	10.069	1	207320	+		37429	36760	25657	25711	43087	43087					0.054629974944646165
LAPCRCARQ	9	Unmodified	_LAPCRCARQ_					0	0	0			REV__ENST00000367332.5_1_1:201123056-201123604:-|nuORF	REV__ENST00000367332.5_1_1:201123056-201123604:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7779846191406	2	509.257671	1016.50079	1.071	0.00054541	-3.6486	-0.0018581	-2.5776	-0.0013127	509.2557155115816	19.094	0.39449	19.094	18.922	19.317	0					9	7	2	0	0	0	0.024487	1	393	393		17.365	0	1	15180	+		37430	31015	25658	25712	43088	43088					-0.0068017452640560805
LAPDQQALY	9	Unmodified	_LAPDQQALY_					0	0	0		ENST00000530879.1_1_8:146029013-146029199:+|nuORF;ENSG00000197363|ENST00000359971|ZNF517	ENST00000530879.1_1_8:146029013-146029199:+|nuORF	ENST00000530879.1_1_8:146029013-146029199:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.76348876953125	2	509.763832	1017.51311	-0.24962	-0.00012725	-0.68135	-0.00034733	-0.93097	-0.00047458	509.76355391283346	49.38	1.5658	49.101	48.465	50.031	-0.27977					133	41	6	0	0	0	0.31247	1	4917	4917		73.975	2.5968	1	50083000			37431	9988	25659	25713	43089	43089					0.005054636892737108
LAPDQQALY	9	Unmodified	_LAPDQQALY_					0	0	0		ENST00000530879.1_1_8:146029013-146029199:+|nuORF;ENSG00000197363|ENST00000359971|ZNF517	ENST00000530879.1_1_8:146029013-146029199:+|nuORF	ENST00000530879.1_1_8:146029013-146029199:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.7635498046875	2	509.763832	1017.51311	-0.14227	-7.2525E-05	-0.72886	-0.00037155	-0.87113	-0.00044407	509.7635179978519	49.227	1.5687	49.045	48.408	49.977	-0.18206					140	41	6	0	0	0	0.17455	2	4905	4905;4923		94.006	8.6469	1	48020000			37432	9988	25659	25713	43090;43091	43090					0.005054636892737108
LAPEDAQGK	9	Unmodified	_LAPEDAQGK_					0	0	0		ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2676696777344	2	464.740357	927.46616	-0.23683	-0.00011006	1.8257	0.00084849	1.5889	0.00073843	464.7410614437001	81.731	0.6839	81.6	81.298	81.982	-0.13075					35	16	4	0	0	0	0.024021	1	10152	10152		68.787	24.256	1	563430			37433	13222	25660	25714	43092	43092					-0.0004739586186133238
LAPEDAQGK	9	Unmodified	_LAPEDAQGK_					0	0	0		ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.740357	927.46616	-0.55842	-0.00025952	2.1283	0.00098912	1.5699	0.00072959	464.74118702556154	81.597	0.65025	81.597	81.299	81.95	0	0.066915	0.00024992	NaN	68.787	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481030			37434	13222	25660	25714							-0.0004739586186133238
LAPEDAQGK	9	Unmodified	_LAPEDAQGK_					0	0	0		ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.740357	927.46616	0.40969	0.0001904	0.053066	2.4662E-05	0.46276	0.00021506	464.74067158763035	81.701	0.29574	81.472	81.312	81.608	-0.2289	-0.058783	-0.001679	NaN	68.787	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65456			37435	13222	25660	25714							-0.0004739586186133238
LAPEDAQGK	9	Unmodified	_LAPEDAQGK_					0	0	0		ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	ENST00000378024.8_2_11:62297320-62297374:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.740357	927.46616	0.2412	0.0001121	1.672	0.00077706	1.9132	0.00088916	464.7409148281853	81.603	0.2941	81.41	81.254	81.548	-0.19333	-0.12067	-0.00017419	NaN	68.787	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39146			37436	13222	25660	25714							-0.0004739586186133238
LAPEIVIKV	9	Unmodified	_LAPEIVIKV_					0	0	0		ENST00000504256.5_1_4:25419211-25420001:+|nuORF;ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4	ENST00000504256.5_1_4:25419211-25420001:+|nuORF	ENST00000504256.5_1_4:25419211-25420001:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7922668457031	2	491.320786	980.627018	-1.9858	-0.00097564	2.075	0.0010195	0.089213	4.3832E-05	491.32165732575504	60.25	1.0559	60.329	59.974	61.029	0.078888					61	27	4	0	0	0	0.024263	1	6942	6942		42.396	0	1	2406500			37437	1165	25661	25715	43093	43093					0.1359297852217196
LAPETNKLV	9	Unmodified	_LAPETNKLV_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7845764160156	2	492.78985	983.565146	-0.00079267	-3.9062E-07	-1.9261	-0.00094916	-1.9269	-0.00094955	492.7888222510482	78.522	0.79671	78.522	78.363	79.16	0					36	18	3	0	0	0	0.70156	1	9738	9738		45.972	1.5951	1	1417400	+		37438	23084	25662	25716	43094	43094					0.07270627103059724
LAPFHSLA	8	Unmodified	_LAPFHSLA_					0	0	0			REV__ENSG00000186432|ENST00000334256|KPNA4	REV__ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2369689941406	2	428.239796	854.465038	-0.57765	-0.00024737	-3.9391	-0.0016869	-4.5168	-0.0019343	428.2379963888757	30.024	1.2759	30.033	29.677	30.953	0.0086708					48	30	2	0	0	0	0.82104	1	1882	1882		57.453	1.9484	1	1201900	+		37439	27854	25663	25717	43095	43095					0.03198434559897123
LAPFMIPL	8	Unmodified	_LAPFMIPL_					0	0	0			REV__nc|ENSG00000112640|Q14738-3|PPP2R5D	REV__nc|ENSG00000112640|Q14738-3|PPP2R5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7611083984375	2	451.264425	900.514297	0.61697	0.00027842	-4.1455	-0.0018707	-3.5286	-0.0015923	451.26260737816364	22.267	0.65055	22.078	21.723	22.374	-0.18894					23	13	3	0	0	0	0.027866	1	788	788		24.504	0	1	194120	+		37440	22017	25664	25718	43096	43096					0.060060065245011174
LAPFSIIKSN	10	Unmodified	_LAPFSIIKSN_					0	0	0			REV__ENSG00000146166|ENST00000370657|LGSN	REV__ENSG00000146166|ENST00000370657|LGSN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3170166015625	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0344	1	10815	10815		41.427	4.2675	1	17400000	+		37441	24465	25665	25719	43097	43097					0.08222889028479585
LAPGAEHTI	9	Unmodified	_LAPGAEHTI_					0	0	0			REV__nc|ENSG00000132004|Q5XUX1-2|FBXW9	REV__nc|ENSG00000132004|Q5XUX1-2|FBXW9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7445983886719	2	454.745442	907.476331	0.6119	0.00027826	-1.9362	-0.0008805	-1.3243	-0.00060224	454.74447025012137	101.61	1.8033	101.48	100.73	102.53	-0.13157					101	41	4	0	0	0	0.90698	1	12616	12616		31.955	2.8053	1	2784600	+		37442	36660	25666	25720	43098	43098					0.018892118633857535
LAPGNRSL	8	Unmodified	_LAPGNRSL_					0	0	0			REV__ENST00000439983.5_1_7:44084336-44089926:+|nuORF	REV__ENST00000439983.5_1_7:44084336-44089926:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.2406311035156	2	414.240327	826.466101	0.28664	0.00011874	0.96978	0.00040172	1.2564	0.00052046	414.24023643031467	33.994	1.1302	33.99	33.561	34.691	-0.0045624					77	28	5	0	0	0	0.6536	1	2499	2499		71.296	7.9894	1	3599500	+		37443	23646	25667	25721	43099	43099					0.045926489288035555
LAPILHVVK	9	Unmodified	_LAPILHVVK_					0	0	0			REV__ENST00000331768.9_1_14:99864104-99864326:-|nuORF	REV__ENST00000331768.9_1_14:99864104-99864326:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2966613769531	2	495.328945	988.643337	0.75269	0.00037283	-0.15099	-7.4791E-05	0.6017	0.00029804	495.3289359270755	54.617	0.1133	54.411	54.318	54.431	-0.20613					4	2	2	0	0	0	0.024541	1	5787	5787		12.959	0	1	68756	+		37444	30481	25668	25722	43100	43100					0.14856104478940324
LAPIVPML	8	Unmodified	_LAPIVPML_					0	0	0			REV__AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense;REV__ENST00000269919.10_1_19:18475054-18475243:+|nuORF;REV__ENST00000469840.1_1_2:201399891-201407862:+|nuORF	REV__ENST00000469840.1_1_2:201399891-201407862:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2665710449219	2	427.264425	852.514297	0.005114	2.185E-06	4.4426	0.0018982	4.4477	0.0019003	427.2663599398137	42.477	1.4338	42.477	42.187	43.621	0					94	39	4	0	0	0	0.69959	1	3946	3946		67.327	12.433	1	20246000	+		37445	33137;29793;19131	25669	25723	43101	43101					0.08214006524474371
LAPKIVDTLH	10	Unmodified	_LAPKIVDTLH_					0	0	0		ENST00000507414.1_1_5:7892894-7893736:+|nuORF	ENST00000507414.1_1_5:7892894-7893736:+|nuORF	ENST00000507414.1_1_5:7892894-7893736:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8299560546875	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.1266	1	10834	10834		29.17	1.2878	1	6921700			37446	15760	25670	25724	43102	43102					0.10094577919812764
LAPKPGRDRRM	11	Oxidation (M)	_LAPKPGRDRRM(Oxidation (M))_		LAPKPGRDRRM(1)		LAPKPGRDRRM(42)	0	0	1			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.24700927734375	3	438.247067	1311.71937	0.053673	2.3522E-05	-0.46128	-0.00020215	-0.4076	-0.00017863	438.24702929565854	26.722	1.0373	26.722	26.324	27.361	0					95	25	5	0	0	0	0.97516	1	1410	1410		42.338	12.787	1	7865700	+		37447	24160	25671	25725	43103	43103		717			0.0759813331674195
LAPKPGRDRRM	11	Oxidation (M)	_LAPKPGRDRRM(Oxidation (M))_					0	0	1			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	438.247067	1311.71937	0.053673	2.3522E-05	-0.46128	-0.00020215	-0.4076	-0.00017863	438.24702929565854	26.722	1.0373	26.722	26.324	27.361	0	0.01942	-0.000366	NaN	42.338	95	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7865700	+		37448	24160	25671	25725				717			0.0759813331674195
LAPKPGRDRRM	11	Unmodified	_LAPKPGRDRRM_					0	0	0			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.2491149902344	3	432.915429	1295.72446	-0.4273	-0.00018498	-0.45922	-0.0001988	-0.88651	-0.00038379	432.91552546228326	32.656	1.4571	32.656	32.03	33.487	0					129	38	6	0	0	0	1.044	1	2265	2265		26.75	1.6237	1	7053900	+		37449	24160	25671	25726	43104	43104					0.08842437179373519
LAPKPGRDRRM	11	Unmodified	_LAPKPGRDRRM_					0	0	0			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.9152526855469	3	432.915429	1295.72446	-0.41842	-0.00018114	-0.55223	-0.00023907	-0.97065	-0.00042021	432.9154714908963	32.501	1.431	32.513	31.863	33.294	0.011795					122	37	5	0	0	0	0.99648	1	2240	2240		37.6	7.031	1	6600900	+		37450	24160	25671	25726	43105	43105					0.08842437179373519
LAPLALLVSE	10	Unmodified	_LAPLALLVSE_					0	0	0			REV__ENST00000400911.7_1_12:6571776-6572001:-|nuORF	REV__ENST00000400911.7_1_12:6571776-6572001:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2944946289062	2	513.3157	1024.61685	-0.1484	-7.6174E-05	2.5679	0.0013182	2.4195	0.001242	513.3169429957942	54.018	0.70787	53.773	53.49	54.198	-0.2453					38	22	2	0	0	0	0.03519	1	5681	5681		20.947	7.1716	1	382040	+		37451	31854	25672	25727	43106	43106					0.10552370796949617
LAPLALYS	8	Unmodified	_LAPLALYS_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2502746582031	2	424.249829	846.485105	-0.78296	-0.00033217	2.1396	0.00090772	1.3566	0.00057554	424.25068578129424	102.81	3.5004	102.81	100.1	103.6	0					120	81	3	0	0	0	0.98906	1	13167	13167		39.021	9.18	1	6301600	+		37452	24185	25673	25728	43107	43107					0.05572185499852367
LAPLALYS	8	Unmodified	_LAPLALYS_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.2503356933594	2	424.249829	846.485105	-0.17093	-7.2515E-05	1.419	0.00060202	1.2481	0.0005295	424.25040312953325	102.79	2.6572	102.79	100.74	103.4	0.0054169					101	62	3	0	0	0	1.0017	1	13114	13114		37.028	7.1869	1	5970700	+		37453	24185	25673	25728	43108	43108					0.05572185499852367
LAPLALYS	8	Unmodified	_LAPLALYS_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.2506408691406	2	424.249829	846.485105	0.53193	0.00022567	0.77058	0.00032692	1.3025	0.00055259	424.25021290018225	102.93	1.3282	102.8	102.23	103.56	-0.12724					83	31	4	0	0	0	1.0017	2	12790	12778;12790		37.028	1.8278	1	6328600	+		37454	24185	25673	25728	43109;43110	43110					0.05572185499852367
LAPLALYS	8	Unmodified	_LAPLALYS_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2502746582031	2	424.249829	846.485105	0.10346	4.3893E-05	1.2046	0.00051106	1.3081	0.00055496	424.2503450708961	102.9	3.7499	102.78	100.52	104.27	-0.12783					151	97	3	0	0	0	1.0017	2	12804	12782;12804		37.028	3.0454	1	8549900	+		37455	24185	25673	25728	43111;43112	43112					0.05572185499852367
LAPLALYS	8	Unmodified	_LAPLALYS_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2503356933594	2	424.249829	846.485105	0.59353	0.00025181	0.7089	0.00030075	1.3024	0.00055256	424.2501351892279	103.04	3.3951	102.87	100.71	104.11	-0.17034					139	82	3	0	0	0	1.0017	1	12803	12803		37.028	1.8278	1	9216600	+		37456	24185	25673	25728	43113	43113					0.05572185499852367
LAPLGPPSL	9	Unmodified	_LAPLGPPSL_					0	0	0			REV__ENSG00000148704|ENST00000369206|VAX1	REV__ENSG00000148704|ENST00000369206|VAX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.24273681640625	2	432.763104	863.511654	-0.5929	-0.00025659	3.9377	0.0017041	3.3448	0.0014475	432.7649209934534	51.247	0.96238	51.334	50.615	51.577	0.087006					33	26	2	0	0	0	0.024325	1	5360	5360		50.025	0	1	327870	+		37457	24632	25674	25729	43114	43114					0.07443874391185545
LAPLLGLQV	9	Unmodified	_LAPLLGLQV_					0	0	0		ENST00000372264.3_1_9:134183814-134184315:+|nuORF	ENST00000372264.3_1_9:134183814-134184315:+|nuORF	ENST00000372264.3_1_9:134183814-134184315:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2867736816406	2	462.299853	922.585153	0.71766	0.00033178	-0.52329	-0.00024192	0.19437	8.9858E-05	462.2997876908408	52.598	0.22436	52.69	52.486	52.71	0.091938					9	5	2	0	0	0	0.024517	1	5554	5554		26.796	0	1	375160			37458	13032	25675	25730	43115	43115					0.12076422833672495
LAPLLGLQV	9	Unmodified	_LAPLLGLQV_					0	0	0		ENST00000372264.3_1_9:134183814-134184315:+|nuORF	ENST00000372264.3_1_9:134183814-134184315:+|nuORF	ENST00000372264.3_1_9:134183814-134184315:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.299853	922.585153	0.17487	8.0844E-05	4.8159	0.0022264	4.9908	0.0023073	462.3017942298149	52.883	0.42921	52.736	52.406	52.835	-0.14723	0.023085	0.00099286	NaN	26.796	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151370			37459	13032	25675	25730							0.12076422833672495
LAPLLTTAS	9	Unmodified	_LAPLLTTAS_					0	0	0			REV__ENSG00000161692|ENST00000315005|DBF4B	REV__ENSG00000161692|ENST00000315005|DBF4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.7649230957031	2	443.765843	885.517133	0.12053	5.3487E-05	-3.055	-0.0013557	-2.9345	-0.0013022	443.76444607559887	78.654	3.0913	78.399	77.578	80.67	-0.25471					182	73	3	0	0	0	0.98697	1	9473	9473		23.042	4.7181	1	709500	+		37460	25397	25676	25731	43116	43116					0.06979553182998188
LAPLMPFL	8	Unmodified	_LAPLMPFL_					0	0	0		ENST00000473916.1_1_6:30891971-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-2|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF;ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-3|VARS2;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2	ENST00000473916.1_1_6:30891971-30893984:+|nuORF	ENST00000473916.1_1_6:30891971-30893984:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2667236328125	2	451.264425	900.514297	0.25379	0.00011453	4.3553	0.0019654	4.6091	0.0020799	451.266240199669	54.218	1.0449	54.071	53.566	54.611	-0.14724					65	29	4	0	0	0	0.69959	1	5901	5901		67.327	1.524	1	4467600			37461	5118	25677	25732	43117	43117					0.0600600652447838
LAPLPFAR	8	Unmodified	_LAPLPFAR_					0	0	0		ENST00000481848.6_2_6:127836176-127837095:-|nuORF	ENST00000481848.6_2_6:127836176-127837095:-|nuORF	ENST00000481848.6_2_6:127836176-127837095:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2591247558594	2	442.771263	883.527973	-0.33332	-0.00014758	-3.627	-0.0016059	-3.9603	-0.0017535	442.7694781407869	23.731	0.42818	23.731	23.566	23.994	0					15	9	2	0	0	0	0.027866	1	950	950		19.36	0	1	59971			37462	15236	25678	25733	43118	43118					0.08155000347937857
LAPLPSDLP	9	Unmodified	_LAPLPSDLP_					0	0	0			REV__ENST00000409443.6_1_2:172016940-172017408:-|nuORF	REV__ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.28179931640625	2	461.765843	921.517133	-0.34278	-0.00015828	2.2735	0.0010498	1.9307	0.00089152	461.7661099387208	76.105	0.82745	76.105	75.769	76.597	0					35	20	2	0	0	0	0.024466	1	9418	9418		25.45	2.4135	1	136630	+		37463	31960	25679	25734	43119	43119					0.05323553182984142
LAPLRGLL	8	Unmodified	_LAPLRGLL_					0	0	0			REV__ENSG00000184709|ENST00000371542|LRRC26	REV__ENSG00000184709|ENST00000371542|LRRC26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.3028564453125	2	426.786913	851.559273	0.20344	8.6825E-05	0.4548	0.0001941	0.65824	0.00028093	426.78686440229205	63.731	0.41239	63.504	63.328	63.74	-0.22773					17	10	2	0	0	0	0.027866	1	7205	7205		40.573	0	1	163680	+		37464	27696	25680	25735	43120	43120					0.12755573382037255
LAPLRGLL	8	Unmodified	_LAPLRGLL_					0	0	0			REV__ENSG00000184709|ENST00000371542|LRRC26	REV__ENSG00000184709|ENST00000371542|LRRC26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.302734375	2	426.786913	851.559273	0.58416	0.00024931	0.27139	0.00011583	0.85555	0.00036514	426.7865600746217	63.831	0.52271	63.573	63.352	63.875	-0.25824					23	13	3	0	0	0	0.027866	1	7229	7229		40.573	0	1	152230	+		37465	27696	25680	25735	43121	43121					0.12755573382037255
LAPLRGLL	8	Unmodified	_LAPLRGLL_					0	0	0			REV__ENSG00000184709|ENST00000371542|LRRC26	REV__ENSG00000184709|ENST00000371542|LRRC26	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	426.786913	851.559273	0.60465	0.00025805	-0.24209	-0.00010332	0.36255	0.00015473	426.7867701197534	63.645	0.5802	63.645	63.265	63.845	0	0.054329	7.0914E-05	NaN	40.573	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118510	+		37466	27696	25680	25735							0.12755573382037255
LAPLRGLL	8	Unmodified	_LAPLRGLL_					0	0	0			REV__ENSG00000184709|ENST00000371542|LRRC26	REV__ENSG00000184709|ENST00000371542|LRRC26	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.786913	851.559273	1.8921	0.00080752	-1.6638	-0.00071008	0.2283	9.7436E-05	426.7861379584535	63.582	0.57087	63.636	63.267	63.838	0.054104	0.045662	-0.0011426	NaN	40.573	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132540	+		37467	27696	25680	25735							0.12755573382037255
LAPPALDVKNL	11	Unmodified	_LAPPALDVKNL_					0	0	0			REV__ENSG00000204590|ENST00000376621|GNL1	REV__ENSG00000204590|ENST00000376621|GNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.84326171875	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.9728	1	10863	10863		42.864	1.4377	1	1877500	+		37468	28622	25681	25736	43122	43122					0.10690847091291289
LAPPIKPIK	9	Unmodified	_LAPPIKPIK_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.8132019042969	2	488.83132	975.648088	-0.6492	-0.00031735	-3.2603	-0.0015937	-3.9095	-0.0019111	488.829623110454	58.01	0.42499	58.101	57.872	58.297	0.091217					18	11	2	0	0	0	0.024535	1	6447	6447		18.324	9.5021	1	152250			37469	3667	25682	25737	43123	43123					0.15928988621703866
LAPPQCSPP	9	Unmodified	_LAPPQCSPP_					0	0	0			REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF	REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.24298095703125	2	455.228571	908.442588	0.46213	0.00021038	3.6715	0.0016714	4.1337	0.0018818	455.2304459217792	36.583	0.48655	36.583	36.44	36.927	0					13	12	2	0	0	0	0.024323	1	2946	2946		53.351	17.733	1	55411	+		37470	32370	25683	25738	43124	43124					-0.015295329000309721
LAPPSRNL	8	Unmodified	_LAPPSRNL_					0	0	0		ENST00000556356.1_1_12:57597999-57598570:+|nuORF	ENST00000556356.1_1_12:57597999-57598570:+|nuORF	ENST00000556356.1_1_12:57597999-57598570:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7784118652344	2	434.255977	866.497401	0.062351	2.7076E-05	0.16647	7.2291E-05	0.22882	9.9368E-05	434.2558812875242	36.627	1.013	36.422	36.127	37.14	-0.20518					37	25	2	0	0	0	0.027866	1	2872	2872		21.96	0	1	3080100			37471	16705	25684	25739	43125	43125					0.05881221962908967
LAPQAQQQP	9	Unmodified	_LAPQAQQQP_					0	0	0			REV__ENSG00000171533|ENST00000304771|MAP6	REV__ENSG00000171533|ENST00000304771|MAP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2869567871094	2	490.761623	979.508694	0.9057	0.00044448	3.4686	0.0017023	4.3743	0.0021468	490.7629984240335	59.058	0.80598	59.058	58.714	59.52	0					57	21	4	0	0	0	0.024381	1	6795	6795		29.15	7.1897	1	1330300	+		37472	26579	25685	25740	43126	43126					0.01811999266374187
LAPQAQQQP	9	Unmodified	_LAPQAQQQP_					0	0	0			REV__ENSG00000171533|ENST00000304771|MAP6	REV__ENSG00000171533|ENST00000304771|MAP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.305908203125	2	490.761623	979.508694	1.6298	0.00079987	2.7992	0.0013737	4.429	0.0021736	490.76263133063213	59.258	1.0504	59.071	58.758	59.808	-0.18705					62	28	5	0	0	0	0.024354	1	6776	6776		38.806	0	1	1443800	+		37473	26579	25685	25740	43127	43127					0.01811999266374187
LAPQAVGSGI	10	Unmodified	_LAPQAVGSGI_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;nc|ENSG00000114859|P51788-4|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7561950683594	2	456.761092	911.507631	-0.43161	-0.00019714	0.49555	0.00022635	0.063942	2.9206E-05	456.76104779833935	31.095	0.5458	31.095	30.797	31.343	0					16	12	2	0	0	0	0.03519	1	2076	2076		64.207	16.55	1	96748			37474	3390	25686	25741	43128	43128					0.048337848974938424
LAPQGPQITLL	11	Unmodified	_LAPQGPQITLL_					0	0	0			REV__nc|ENSG00000285708|Q9H334-6|FOXP1	REV__nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8428955078125	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	0.97926	1	11274	11274		41.427	0.64845	1	5880000	+		37475	22152	25687	25742	43129	43129					0.10690847091291289
LAPQRPALPL	10	Unmodified	_LAPQRPALPL_					0	0	0			REV__ENSG00000070444|ENST00000174618|MNT	REV__ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2593994140625	2	538.334759	1074.65496	3.0104	0.0016206	0.49139	0.00026453	3.5018	0.0018852	538.3353464404993	16.714	0.17375	16.714	16.606	16.78	0					6	5	2	0	0	0	0.03519	1	86	86		12.207	0	1	13504	+		37476	20425	25688	25743	43130	43130					0.12062301502282935
LAPQSPQGGV	10	Unmodified	_LAPQSPQGGV_					0	0	0		nc|ENSG00000137693|P46937-4|YAP1;KIAA1377-YAP1|2|fusion;KIAA1377-YAP1|3|fusion;KIAA1377-YAP1|1|fusion;nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1	nc|ENSG00000137693|P46937-4|YAP1	nc|ENSG00000137693|P46937-4|YAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2547912597656	2	477.256174	952.497795	0.14556	6.947E-05	0.16456	7.8538E-05	0.31012	0.00014801	477.25609237097115	41.619	1.0694	41.642	41.182	42.252	0.023006					96	30	5	0	0	0	0.80817	1	3722	3722		60.118	6.7668	1	5221700			37477	5146	25689	25744	43131	43131					0.01964596892105419
LAPREKIREGL	11	Unmodified	_LAPREKIREGL_					0	0	0			REV__nc|ENSG00000037749|P55082-2|MFAP3	REV__nc|ENSG00000037749|P55082-2|MFAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.3845825195312	2	641.385511	1280.75647	0.90452	0.00058014	-2.0547	-0.0013178	-1.1501	-0.00073768	641.3840517517907	101.3	0.7739	101.31	101.05	101.82	0.0090332					48	17	4	0	0	0	1.0017	1	12951	12951		36.447	14.761	1	914740	+		37478	20071	25690	25745	43132	43132					0.12732128134166487
LAPRGSGY	8	Unmodified	_LAPRGSGY_					0	0	0		ENST00000530142.5_1_8:145581690-145582740:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000530142.5_1_8:145581690-145582740:-|nuORF	ENST00000530142.5_1_8:145581690-145582740:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.7190246582031	2	410.719227	819.423902	0.96756	0.0003974	-1.8848	-0.00077414	-0.91727	-0.00037674	410.7183696284328	96.072	1.6868	95.949	95.421	97.108	-0.12305					87	38	4	0	0	0	1.0574	1	11935	11935		25.45	3.7478	1	1564100			37479	16223	25691	25746	43133	43133					0.00696673520440072
LAPRILGQA	9	Unmodified	_LAPRILGQA_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7549743652344	2	469.792727	937.5709	0.12651	5.9432E-05	0.41949	0.00019707	0.546	0.00025651	469.79264738559624	37.616	0.36421	37.648	37.525	37.889	0.032269					12	9	2	0	0	0	0.024412	1	3010	3010		31.955	1.4512	1	48043	+		37480	24038	25692	25747	43134	43134					0.09961770405368497
LAPSDPQVI	9	Unmodified	_LAPSDPQVI_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2618103027344	2	470.260925	938.507297	-0.023162	-1.0892E-05	0.066804	3.1415E-05	0.043642	2.0523E-05	470.2608203374161	33.415	0.52079	33.184	32.752	33.273	-0.23107					25	12	3	0	0	0	0.27161	1	2384	2384		79.451	2.6769	1	1068000			37481	1388	25693	25748	43135	43135					0.035583651776164515
LAPSEVRR	8	Unmodified	_LAPSEVRR_					0	0	0			REV__nc|ENSG00000108469|O94762-4|RECQL5	REV__nc|ENSG00000108469|O94762-4|RECQL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2724609375	2	464.272158	926.529764	-0.11763	-5.4612E-05	-0.53979	-0.00025061	-0.65742	-0.00030522	464.27202017286174	19.59	0.96406	19.471	19.2	20.164	-0.11872					57	19	5	0	0	0	0.96719	1	455	455		42.474	3.6683	1	6839000	+		37482	21738	25694	25749	43136	43136					0.06356009365902082
LAPSISELLE	10	Unmodified	_LAPSISELLE_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2787475585938	2	536.300247	1070.58594	-0.381	-0.00020433	-0.37557	-0.00020142	-0.75657	-0.00040575	536.2999650233761	24.722	0.22835	24.8	24.731	24.959	0.078344					6	4	2	0	0	0	0.03519	1	1046	1046		16.473	0	1	39179	+		37483	20658	25695	25750	43137	43137					0.053471726920633955
LAPSKKKP	8	Unmodified	_LAPSKKKP_					0	0	0			REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF	REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7719421386719	2	434.78437	867.554188	-0.63195	-0.00027476	2.4478	0.0010643	1.8158	0.00078949	434.7855563264805	25.489	0.2476	25.455	25.392	25.639	-0.034395					9	5	3	0	0	0	0.027866	1	1219	1219		45.952	32.177	1	235250	+		37484	30176	25696	25751	43138	43138					0.11511269519417056
LAPSPENSPEA	11	Unmodified	_LAPSPENSPEA_					0	0	0			REV__ENSG00000115593|ENST00000419482|SMYD1	REV__ENSG00000115593|ENST00000419482|SMYD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2642211914062	2	556.266936	1110.51932	-0.58061	-0.00032297	3.9281	0.0021851	3.3475	0.0018621	556.2690658088032	44.954	0.51386	44.701	44.391	44.905	-0.25252					21	12	2	0	0	0	0.024723	1	4192	4192		17.468	0	1	501780	+		37485	22214	25697	25752	43139	43139					-0.03152062869844485
LAPTRSTSL	9	Unmodified	_LAPTRSTSL_					0	0	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.27178955078125	2	473.271824	944.529095	0.41183	0.00019491	-0.50057	-0.00023691	-0.08874	-4.1998E-05	473.27147638337254	41.293	0.8491	41.316	41.005	41.854	0.023006					58	23	4	0	0	0	0.033448	1	3644	3644		138.83	9.9644	1	2855300			37486	7862	25698	25753	43140	43140					0.05461169926195453
LAPTRSTSL	9	Unmodified	_LAPTRSTSL_					0	0	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	473.271824	944.529095	0.83478	0.00039508	-1.0414	-0.00049288	-0.20666	-9.7804E-05	473.27125837650027	41.128	0.9935	41.128	40.764	41.758	0	-0.077574	-0.00032933	NaN	138.83	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3033500			37487	7862	25698	25753							0.05461169926195453
LAPTRSTSL	9	Unmodified	_LAPTRSTSL_					0	0	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	473.271824	944.529095	0.66277	0.00031367	-0.68928	-0.00032622	-0.026507	-1.2545E-05	473.27136843279555	41.296	1.0004	41.173	40.833	41.834	-0.12317	-0.032555	4.0063E-06	NaN	138.83	57	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3068400			37488	7862	25698	25753							0.05461169926195453
LAPTSFIL	8	Unmodified	_LAPTSFIL_					0	0	0		ENST00000557041.1_1_14:20927289-20927575:-|nuORF	ENST00000557041.1_1_14:20927289-20927575:-|nuORF	ENST00000557041.1_1_14:20927289-20927575:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.8860778808594	2	431.257654	860.500755	-0.32405	-0.00013975	-2.4057	-0.0010375	-2.7297	-0.0011772	431.25645157302847	21.291	1.3892	21.201	20.63	22.02	-0.090094					42	28	3	0	0	0	0.027866	1	719	719		26.796	0	1	63386			37489	16726	25699	25754	43141	43141					0.06492472016896045
LAPVKNQLQI	10	Unmodified	_LAPVKNQLQI_					0	0	0		nc|ENSG00000149557|Q99689-2|FEZ1;ENST00000532981.1_1_11:125333376-125359673:-|nuORF;ENST00000392709.8_1_11:125325619-125359673:-|nuORF;ENSG00000149557|ENST00000278919|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3427734375	2	562.345323	1122.67609	-0.30776	-0.00017306	-3.2287	-0.0018157	-3.5365	-0.0019887	562.3433328300382	89.124	2.8418	89.124	88.128	90.97	0					167	67	3	0	0	0	1.0393	1	11256	11256		40.778	14.085	1	639640			37490	6100	25700	25755	43142	43142					0.11966266811123205
LAPVVWGPCV	10	Unmodified	_LAPVVWGPCV_					0	0	0		ENST00000526387.5_1_11:67172880-67176476:+|nuORF	ENST00000526387.5_1_11:67172880-67176476:+|nuORF	ENST00000526387.5_1_11:67172880-67176476:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7827758789062	2	520.783513	1039.55247	-0.17121	-8.9164E-05	1.4808	0.00077117	1.3096	0.00068201	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	1.1309	1	13675	13675		26.796	1.222	1	7199700			37491	16120	25701	25756	43143	43143					0.03427892439140123
LAPWGVQQL	9	Unmodified	_LAPWGVQQL_					0	0	0			REV__ENST00000393966.1_1_16:67315041-67322708:+|nuORF;REV__ENSG00000196155|ENST00000379344|PLEKHG4	REV__ENST00000393966.1_1_16:67315041-67322708:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.30084228515625	2	506.284734	1010.55492	-0.36719	-0.0001859	-2.6772	-0.0013554	-3.0443	-0.0015413	506.28249306824426	31.937	0.40047	32.006	31.805	32.206	0.06896					11	9	2	0	0	0	0.023355	1	2154	2154		76.847	20.126	1	245620	+		37492	31659;28135	25702	25757	43144	43144					0.050060641684808616
LAPWGVQQL	9	Unmodified	_LAPWGVQQL_					0	0	0			REV__ENST00000393966.1_1_16:67315041-67322708:+|nuORF;REV__ENSG00000196155|ENST00000379344|PLEKHG4	REV__ENST00000393966.1_1_16:67315041-67322708:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.284734	1010.55492	-0.38239	-0.0001936	-4.0706	-0.0020609	-4.453	-0.0022545	506.28222330821137	31.608	0.40072	31.62	31.382	31.782	0.011799	-0.20639	0.0014271	NaN	76.847	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36609	+		37493	31659;28135	25702	25757							0.050060641684808616
LAPWHESEP	9	Unmodified	_LAPWHESEP_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|218|1|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|218|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.234619140625	2	533.253631	1064.49271	-0.37008	-0.00019735	3.6259	0.0019335	3.2558	0.0017362	533.2554087227577	57.867	0.73745	57.867	57.758	58.495	0					21	19	2	0	0	0	0.024487	1	6617	6617		31.955	9.995	1	266480	+		37494	36226	25703	25758	43145	43145					-0.036957069705295
LAPWQDGVL	9	Unmodified	_LAPWQDGVL_					0	0	0		ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.77069091796875	2	499.768917	997.523281	-0.14176	-7.0848E-05	3.894	0.0019461	3.7523	0.0018753	499.77074925881664	65.32	1.2406	65.32	64.983	66.224	0					92	33	4	0	0	0	0.36105	1	7747	7747		68.485	5.1784	1	14555000			37495	7156	25704	25759	43146	43146					0.024420714145321654
LAQAGAHR	8	Unmodified	_LAQAGAHR_					0	0	0			REV__ENST00000518563.5_3_8:42249167-42251383:+|nuORF	REV__ENST00000518563.5_3_8:42249167-42251383:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.2303771972656	2	412.230294	822.446034	-0.48948	-0.00020178	1.1872	0.00048941	0.69775	0.00028763	412.23071113677236	27.154	2.5776	27.235	26.249	28.827	0.081293					138	64	4	0	0	0	1.0133	1	1440	1440		35.201	4.6971	1	8910500	+		37496	34240	25705	25760	43147	43147					0.02770897988852994
LAQAGPRQS	9	Unmodified	_LAQAGPRQS_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2722473144531	2	464.253966	926.493378	-0.11225	-5.211E-05	-0.25343	-0.00011765	-0.36567	-0.00016976	464.25411999034117	19.638	0.34148	19.52	19.299	19.64	-0.11872					9	6	2	0	0	0	0.023635	1	439	439		47.657	0	1	54649	+		37497	23025	25706	25761	43148	43148					0.027191324691898444
LAQALAGHS	9	Unmodified	_LAQALAGHS_					0	0	0		ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.238037109375	2	434.237784	866.461016	0.052996	2.3013E-05	0.0031763	1.3793E-06	0.056172	2.4392E-05	434.2377809813172	34.319	1.8761	34.314	33.412	35.288	-0.0045624					109	48	4	0	0	0	0.27161	1	2527	2527		79.451	4.9344	1	7425400			37498	6766	25707	25762	43149	43149					0.022443450661853603
LAQALSLAGGP	11	Unmodified	_LAQALSLAGGP_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.8317565917969	2	499.287474	996.560395	-0.56392	-0.00028156	-1.372	-0.00068504	-1.936	-0.0009666	499.28676088345253	44.716	0.55216	44.716	44.382	44.934	0					20	15	2	0	0	0	0.024804	1	4246	4246		56.434	12.057	1	134340	+		37499	24045	25708	25763	43150	43150					0.06197742960284813
LAQCRPTV	8	Carbamidomethyl (C)	_LAQC(Carbamidomethyl (C))RPTV_	LAQC(1)RPTV		LAQC(74)RPTV		0	1	0			REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7545471191406	2	472.752744	943.490935	0.91414	0.00043216	0.50242	0.00023752	1.4166	0.00066968	472.7530210484187	39.59	1.3676	39.59	39.219	40.587	0					103	38	5	0	0	0	0.6248	1	3440	3440		73.975	10.996	1	14314000	+		37500	34076	25709	25764	43151	43151	450				0.016929607398765256
LAQDIISNL	9	Unmodified	_LAQDIISNL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7799987792969	2	493.779482	985.544411	0.17781	8.7797E-05	0.097815	4.8299E-05	0.27562	0.0001361	493.77940620560787	57.615	0.77658	57.425	56.973	57.75	-0.19018					32	20	2	0	0	0	0.33603	1	6282	6282		70.816	5.3508	1	3203200	+		37501	24273	25710	25765	43152	43152					0.05106036723384477
LAQDRPLP	8	Unmodified	_LAQDRPLP_					0	0	0		ENST00000416860.2_2_1:2486942-2487152:-|nuORF	ENST00000416860.2_2_1:2486942-2487152:-|nuORF	ENST00000416860.2_2_1:2486942-2487152:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.24298095703125	2	455.261259	908.507966	1.0781	0.00049084	0.42079	0.00019157	1.4989	0.00068241	455.26049896692876	36.711	0.72115	36.711	36.474	37.195	0					38	18	3	0	0	0	0.027866	1	2946	2946		71.296	17.944	1	162620			37502	13905	25711	25766	43153	43153					0.050052046173163944
LAQELQRM	8	Oxidation (M)	_LAQELQRM(Oxidation (M))_		LAQELQRM(1)		LAQELQRM(89)	0	0	1			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.76324462890625	2	502.763309	1003.51206	-0.76204	-0.00038313	0.1768	8.8887E-05	-0.58525	-0.00029424	502.7632938474593	35.564	2.7587	35.564	34.168	36.927	0					136	73	2	0	0	0	0.46709	1	2781	2781		88.643	11.796	1	2380600	+		37503	26431	25712	25767	43154	43154		780			0.01044926048734851
LAQELSLRIAE	11	Unmodified	_LAQELSLRIAE_					0	0	0			REV__SPATA6-FAF1|1|fusion	REV__SPATA6-FAF1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.90576171875	3	414.906594	1241.69795	0.13742	5.7015E-05	-2.4086	-0.00099934	-2.2712	-0.00094233	414.90568220470885	21.158	1.9282	21.23	20.86	22.789	0.071487					101	39	5	0	0	0	1.0074	1	574	574		35.178	2.1388	1	3505200	+		37504	27735	25713	25768	43155	43155					0.08677026769032636
LAQERACAAE	10	Unmodified	_LAQERACAAE_					0	0	0		ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2557983398438	2	531.255848	1060.49714	-0.28407	-0.00015091	0.21717	0.00011537	-0.066894	-3.5538E-05	531.2555789468593	28.37	1.079	28.451	28.208	29.287	0.080812					63	26	4	0	0	0	0.59716	1	1604	1604		77.318	2.2743	1	1277400			37505	14320	25714	25769	43156	43156					-0.030685658192624032
LAQHERLEEET	11	Unmodified	_LAQHERLEEET_					0	0	0			REV__ENST00000463007.5_1_2:240011659-240219867:-|nuORF	REV__ENST00000463007.5_1_2:240011659-240219867:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.7742919921875	3	452.224762	1353.65246	-1.1398	-0.00051545	-3.5506	-0.0016056	-4.6904	-0.0021211	452.2230010762643	21.137	0.79021	20.924	20.525	21.315	-0.2128					32	15	3	0	0	0	0.024801	1	635	635		17.833	7.2463	1	47493	+		37506	32920	25715	25770	43157	43157					-0.010222434839988637
LAQIDLNLS	9	Unmodified	_LAQIDLNLS_					0	0	0			REV__STX17-NR4A3|1|fusion	REV__STX17-NR4A3|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7794494628906	2	493.779482	985.544411	0.35657	0.00017607	-0.7834	-0.00038683	-0.42682	-0.00021076	493.77909835366734	57.628	0.75612	57.453	56.999	57.755	-0.1749					59	19	4	0	0	0	0.013887	1	6439	6439		180.93	4.4813	1	12143000	+		37507	22459	25716	25771	43158	43158					0.05106036723384477
LAQIDLNLS	9	Unmodified	_LAQIDLNLS_					0	0	0			REV__STX17-NR4A3|1|fusion	REV__STX17-NR4A3|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7795104980469	2	493.779482	985.544411	-0.4086	-0.00020176	0.083566	4.1263E-05	-0.32504	-0.0001605	493.779533349193	57.279	0.70262	57.374	56.945	57.647	0.095306					59	18	5	0	0	0	0.14024	1	6330	6330		101.6	5.4103	1	13860000	+		37508	22459	25716	25771	43159	43159					0.05106036723384477
LAQIDLNLS	9	Unmodified	_LAQIDLNLS_					0	0	0			REV__STX17-NR4A3|1|fusion	REV__STX17-NR4A3|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7792053222656	2	493.779482	985.544411	0.17781	8.7797E-05	0.097815	4.8299E-05	0.27562	0.0001361	493.77940620560787	57.615	0.77658	57.425	56.973	57.75	-0.19018					32	20	2	0	0	0	0.053401	2	6294	6294;6306		127.46	1.2191	1	3203200	+		37509	22459	25716	25771	43160;43161	43160					0.05106036723384477
LAQIDLNLS	9	Unmodified	_LAQIDLNLS_					0	0	0			REV__STX17-NR4A3|1|fusion	REV__STX17-NR4A3|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.77923583984375	2	493.779482	985.544411	-0.51719	-0.00025538	0.76163	0.00037608	0.24444	0.0001207	493.7797071551069	57.714	0.67859	57.481	57.061	57.74	-0.23363					29	17	2	0	0	0	0.03201	1	6293	6293		139.97	7.2126	1	3214200	+		37510	22459	25716	25771	43162	43162					0.05106036723384477
LAQIPKEP	8	Unmodified	_LAQIPKEP_					0	0	0			REV__ENST00000505125.5_1_4:54280813-54280888:+|nuORF	REV__ENST00000505125.5_1_4:54280813-54280888:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2535400390625	2	448.26601	894.517468	-0.015797	-7.0811E-06	1.4393	0.00064519	1.4235	0.00063811	448.2666008174455	49.29	0.28439	49.138	49.006	49.29	-0.15277					10	7	2	0	0	0	0.027866	1	5065	5065		50.025	9.4519	1	92858	+		37511	34002	25717	25772	43163	43163					0.06598972902861533
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2608947753906	2	476.260925	950.507297	-0.46008	-0.00021912	-1.1416	-0.00054371	-1.6017	-0.00076283	476.2606905053335	28.186	1.81	27.941	27.289	29.099	-0.24524					152	42	6	0	0	0	0.18427	9	1666	1598;1606;1618;1642;1654;1666;1679;1703;1730		143.11	5.4412	1	99318000			37512	1119	25718	25773	43164;43165;43166;43167;43168;43169;43170;43171;43172	43169					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.260986328125	2	476.260925	950.507297	-0.62088	-0.0002957	0.027723	1.3203E-05	-0.59316	-0.0002825	476.2608288811271	29.515	1.8994	29.343	28.937	30.836	-0.17258					81	44	4	0	0	0	0.32162	1	1805	1805		108.09	5.3142	1	1370200			37513	1119	25718	25773	43173	43173					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	OPSCC_40_ClassI_Rep-2	5	476.2606506347656	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.871	1	27.703	27.203	28.203	-0.16816								0	0	0	0.26985	1	1573	1573		124.59	0	1				37514	1119	25718	25773	43174	43174					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	OPSCC_40_ClassI_Rep-2	5	476.2609558105469	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.005	1	27.837	27.337	28.337	-0.16834								0	0	0	0.166	1	1593	1593		138.24	0	1				37515	1119	25718	25773	43175	43175					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	OPSCC_40_ClassI_Rep-2	5	476.26104736328125	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.085	1	27.916	27.416	28.416	-0.16897								0	0	0	0.26985	1	1605	1605		124.59	0	1				37516	1119	25718	25773	43176	43176					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	OPSCC_40_ClassI_Rep-2	5	476.2607116699219	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.166	1	27.997	27.497	28.497	-0.16897								0	0	0	0.09724	1	1617	1617		147.69	0	1				37517	1119	25718	25773	43177	43177					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	OPSCC_40_ClassI_Rep-2	5	476.26104736328125	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.501	1	28.332	27.832	28.832	-0.16897								0	0	0	0.166	1	1666	1666		138.24	0	1				37518	1119	25718	25773	43178	43178					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MSMS	OPSCC_40_ClassI_Rep-2	5	476.2607116699219	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.594	1	28.425	27.925	28.925	-0.16897								0	0	0	0.33842	1	1679	1679		108.09	5.3142	1				37519	1119	25718	25773	43179	43179					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.260498046875	2	476.260925	950.507297	-0.35256	-0.00016791	-1.2571	-0.00059871	-1.6097	-0.00076662	476.2606324165451	28.056	1.9776	27.904	27.149	29.127	-0.15195					151	47	6	0	0	0	0.07768	6	1593	1569;1581;1593;1605;1617;1629		166.78	4.8646	1	115570000			37520	1119	25718	25773	43180;43181;43182;43183;43184;43185	43182					0.030063651776117695
LAQKEYLS	8	Unmodified	_LAQKEYLS_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2608337402344	2	476.260925	950.507297	-0.16392	-7.8069E-05	-0.31616	-0.00015058	-0.48008	-0.00022865	476.2606914857029	29.493	1.1799	29.343	29	30.18	-0.14952					74	27	4	0	0	0	0.2917	1	1794	1794		115.46	0	1	1572700			37521	1119	25718	25773	43186	43186					0.030063651776117695
LAQKLAKKTHQ	11	Unmodified	_LAQKLAKKTHQ_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5926208496094	3	422.594461	1264.76155	-0.52617	-0.00022236	-3.6431	-0.0015396	-4.1693	-0.0017619	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	1.0501	1	5307	5307		25.068	0.83596	1	14959000	+		37522	24084	25719	25774	43187	43187					0.13976431996798055
LAQKSRQL	8	Unmodified	_LAQKSRQL_					0	0	0			REV__ENST00000563160.5_1_15:45879945-45897659:+|nuORF	REV__ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.28790283203125	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	0.99042	1	12052	12052		38.806	1.647	1	51888000	+		37523	21423	25720	25775	43188	43188					0.08748582400005489
LAQLGRPSI	9	Unmodified	_LAQLGRPSI_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7431945800781	2	477.790184	953.565815	-0.21453	-0.0001025	0.1222	5.8386E-05	-0.092329	-4.4114E-05	477.79012718222174	30.267	0.70441	30.275	30.042	30.746	0.0086689					31	16	3	0	0	0	0.024205	1	1894	1894		63.306	11.007	1	700690	+		37524	27875	25721	25776	43189	43189					0.08717466542748298
LAQLQADLI	9	Unmodified	_LAQLQADLI_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7662048339844	2	492.78985	983.565146	0.26549	0.00013083	-1.1928	-0.0005878	-0.92731	-0.00045697	492.78906962636984	77.704	0.45752	77.704	77.295	77.752	0					18	10	2	0	0	0	0.024261	1	9609	9609		45.972	6.9508	1	356800	+		37525	20459	25722	25777	43190	43190					0.07270627103048355
LAQLRKEL	8	Unmodified	_LAQLRKEL_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.80572509765625	2	485.805834	969.597115	-0.076112	-3.6976E-05	-0.10075	-4.8946E-05	-0.17687	-8.5922E-05	485.8056789599106	35.11	0.70712	34.895	34.589	35.296	-0.21555					53	17	4	0	0	0	0.47665	1	2641	2641		87.754	0	1	1853700	+		37526	21211	25723	25778	43191	43191					0.11110039576851705
LAQLRKEL	8	Unmodified	_LAQLRKEL_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.8056640625	2	485.805834	969.597115	-0.39761	-0.00019316	0.21369	0.00010381	-0.18392	-8.9348E-05	485.80585971638243	35.051	0.83513	34.838	34.56	35.395	-0.21246					57	20	4	0	0	0	0.38451	1	2635	2635		99.375	0	1	1658500	+		37527	21211	25723	25778	43192	43192					0.11110039576851705
LAQLRKEL	8	Unmodified	_LAQLRKEL_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	485.805834	969.597115	-0.076112	-3.6976E-05	-0.10075	-4.8946E-05	-0.17687	-8.5922E-05	485.8056789599106	35.11	0.70712	34.895	34.589	35.296	-0.21555	0.04416	-0.00016682	NaN	99.375	53	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1853700	+		37528	21211	25723	25778							0.11110039576851705
LAQLRRPP	8	Unmodified	_LAQLRRPP_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7801513671875	2	475.798343	949.582134	0.24964	0.00011878	-0.41286	-0.00019644	-0.16322	-7.7658E-05	475.7979651547722	33.854	0.588	33.849	33.637	34.225	-0.0045624					28	14	3	0	0	0	0.027866	1	2464	2464		19.36	7.1531	1	188730	+		37529	21664	25724	25779	43193	43193					0.10532592499509974
LAQLRVPQ	8	Unmodified	_LAQLRVPQ_					0	0	0		ENST00000511723.2_1_4:26875429-26875720:-|nuORF	ENST00000511723.2_1_4:26875429-26875720:-|nuORF	ENST00000511723.2_1_4:26875429-26875720:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.7848205566406	2	462.784902	923.55525	-0.70821	-0.00032775	0.1496	6.923E-05	-0.55862	-0.00025852	462.7849581866432	43.57	0.99104	43.333	43.061	44.052	-0.23736					75	26	4	0	0	0	0.81662	2	3988	3988;4000		57.811	0.35863	1	10983000			37530	15845	25725	25780	43194;43195	43194					0.0904148388832482
LAQNPAEG	8	Unmodified	_LAQNPAEG_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.24737548828125	2	400.200867	798.387182	0.77443	0.00030993	-0.46024	-0.00018419	0.31419	0.00012574	400.2005612901689	32.53	1.1055	32.53	32.03	33.135	0					46	28	2	0	0	0	0.027866	1	2342	2342		31.955	13.63	1	767530	+		37531	24502	25726	25781	43196	43196					-0.02007623096142197
LAQPLEASN	9	Unmodified	_LAQPLEASN_					0	0	0		nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3;ENST00000587789.2_1_19:55670432-55671308:-|nuORF	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.7772521972656	2	471.748182	941.481811	-0.37046	-0.00017476	1.0356	0.00048853	0.6651	0.00031376	471.7487550421875	28.736	0.51565	28.567	28.254	28.769	-0.16897					17	11	2	0	0	0	0.024374	1	1723	1723		40.778	5.1599	1	138610			37532	7716	25727	25782	43197	43197					0.008728906551937143
LAQPQLQP	8	Unmodified	_LAQPQLQP_					0	0	0			REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7509460449219	2	447.75581	893.497067	-0.18122	-8.1144E-05	0.61413	0.00027498	0.4329	0.00019384	447.7558410364695	28.277	0.3661	28.358	28.167	28.533	0.080811					13	8	2	0	0	0	0.027866	1	1578	1578		24.203	0	1	35353	+		37533	35908	25728	25783	43198	43198					0.04605802243054313
LAQPQLQP	8	Unmodified	_LAQPQLQP_					0	0	0			REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	REV__ENST00000604430.1_1_16:29323693-29367128:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	447.75581	893.497067	-0.78404	-0.00035106	1.1446	0.00051249	0.36053	0.00016143	447.7561735401075	28.517	0.46397	28.517	28.191	28.655	0	0.079574	0.0002636	NaN	24.203	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53083	+		37534	35908	25728	25783							0.04605802243054313
LAQPRGLL	8	Unmodified	_LAQPRGLL_					0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.2740783691406	2	434.27417	866.533787	1.2122	0.00052642	-1.3311	-0.00057805	-0.11889	-5.1633E-05	434.2735899978598	54.796	1.4449	54.59	54.237	55.682	-0.20613					73	39	4	0	0	0	0.58212	1	5819	5819		77.944	3.4272	1	9428800	+		37535	24343	25729	25784	43199	43199					0.09518098859621205
LAQPVFYFL	9	Unmodified	_LAQPVFYFL_					0	0	0		ENST00000360370.8_1_3:125726003-125734341:-|nuORF	ENST00000360370.8_1_3:125726003-125734341:-|nuORF	ENST00000360370.8_1_3:125726003-125734341:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3031616210938	2	549.305136	1096.59572	-0.59819	-0.00032859	-3.5038	-0.0019246	-4.102	-0.0022532	549.3031841848409	78.78	1.6602	78.798	78.441	80.101	0.018677					119	39	6	0	0	0	0.78069	1	9718	9718		40.573	4.9543	1	13961000			37536	12765	25730	25785	43200	43200					0.051284054880852636
LAQQCQAEGG	10	Unmodified	_LAQQCQAEGG_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7630615234375	2	502.726923	1003.43929	-0.71177	-0.00035783	1.3068	0.00065697	0.59504	0.00029914	502.7272612389735	35.272	1.7248	35.272	34.371	36.096	0					71	45	3	0	0	0	0.03519	1	2757	2757		84.916	16.129	1	175270			37537	18258	25731	25786	43201	43201					-0.06228827744678256
LAQQCQAEGG	10	Unmodified	_LAQQCQAEGG_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76336669921875	2	502.726923	1003.43929	-1.0266	-0.00051609	1.2252	0.00061596	0.19865	9.9865E-05	502.7273329286778	35.121	1.5396	35.099	34.244	35.783	-0.021763					61	39	3	0	0	0	0.03519	1	2728	2728		71.877	31.305	1	124020			37538	18258	25731	25786	43202	43202					-0.06228827744678256
LAQRAPWSP	9	Unmodified	_LAQRAPWSP_					0	0	0		ENST00000472864.1_1_10:43699167-43699266:-|nuORF	ENST00000472864.1_1_10:43699167-43699266:-|nuORF	ENST00000472864.1_1_10:43699167-43699266:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3074951171875	2	513.279983	1024.54541	-0.16857	-8.6524E-05	-1.0606	-0.00054436	-1.2291	-0.00063089	513.2797181144911	53.731	0.67535	53.731	53.267	53.942	0					26	18	2	0	0	0	0.023635	1	5795	5795		47.657	0	1	350260			37539	14996	25732	25787	43203	43203					0.03412295882935723
LAQRARDQWSM	11	Unmodified	_LAQRARDQWSM_					0	0	0			REV__ENSG00000073614|ENST00000399788|KDM5A	REV__ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7146911621094	3	454.562944	1360.667	0.081101	3.6866E-05	-4.2858	-0.0019482	-4.2047	-0.0019113	454.5609659320641	22.847	0.83442	22.847	22.525	23.36	0					41	18	3	0	0	0	0.024742	1	836	836		20.315	0	1	129360	+		37540	20504	25733	25788	43204	43204					0.001095501831287038
LAQRGAQV	8	Unmodified	_LAQRGAQV_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7283020019531	2	421.745776	841.477	-0.52	-0.00021931	0.1785	7.5283E-05	-0.3415	-0.00014402	421.74578758522176	28.727	0.83632	28.722	28.286	29.122	-0.0042019					40	19	3	0	0	0	0.027866	1	1672	1672		52.299	0	1	701470	+		37541	23654	25734	25789	43205	43205					0.04992051303099743
LAQRHAPLPEP	11	Unmodified	_LAQRHAPLPEP_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.8804626464844	3	410.231412	1227.67241	0.51571	0.00021156	1.3534	0.00055519	1.8691	0.00076675	410.2318677448417	33.745	0.87598	33.745	33.174	34.05	0					34	23	2	0	0	0	0.024735	1	2388	2388		21.78	14.762	1	94214	+		37542	21449	25735	25790	43206	43206					0.06767597037287487
LAQRLEEDPI	10	Unmodified	_LAQRLEEDPI_					0	0	0			REV__nc|ENSG00000141985|Q99961-2|SH3GL1	REV__nc|ENSG00000141985|Q99961-2|SH3GL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	591.8092041015625	2	592.319502	1182.62445	-1.1626	-0.00068866	0.67399	0.00039922	-0.48866	-0.00028944	592.8206042213208	41.613	0.39728	41.613	41.396	41.793	0					19	10	3	0	0	0	0.03519	1	3761	3761		30.318	0	1	204670	+		37543	24129	25736	25791	43207	43207					0.04044478326568424
LAQRPFFEA	9	Unmodified	_LAQRPFFEA_					0	0	0		nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENSG00000167393|ENST00000390665|PPP2R3B;ENST00000477110.6_1_X:295104-295341:-|nuORF	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7613525390625	2	539.787641	1077.56073	-2.1462	-0.0011585	1.116	0.0006024	-1.0302	-0.0005561	540.2901140330908	34.007	0.38924	33.832	33.583	33.972	-0.17557					13	9	2	0	0	0	0.024323	1	2467	2467		53.351	0	1	71815			37544	7683	25737	25792	43208	43208					0.025051626801541715
LAQRRILE	8	Unmodified	_LAQRRILE_					0	0	0			REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.8089599609375	2	499.808908	997.603263	-0.53927	-0.00026953	0.12758	6.3765E-05	-0.41169	-0.00020577	499.80893599705723	38.081	1.0831	37.902	37.63	38.713	-0.17929					83	30	4	0	0	0	0.97924	1	3106	3106		40.573	0	1	11666000	+		37545	37058	25738	25793	43209	43209					0.1043655780838435
LAQRRILE	8	Unmodified	_LAQRRILE_					0	0	0			REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.8090515136719	2	499.808908	997.603263	-0.86347	-0.00043157	0.4057	0.00020277	-0.45777	-0.0002288	499.809071667659	38.135	1.0039	37.914	37.649	38.653	-0.22149					85	27	4	0	0	0	0.97924	1	3102	3102		40.573	0	1	12379000	+		37546	37058	25738	25793	43210	43210					0.1043655780838435
LAQRYSVS	8	Unmodified	_LAQRYSVS_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2503662109375	2	462.250892	922.48723	-1.0982	-0.00050766	0.36475	0.00016861	-0.73348	-0.00033905	462.25087812814104	37.707	1.2655	37.707	37.414	38.68	0					102	35	4	0	0	0	0.50239	1	3135	3135		85.359	0.44396	1	4333100			37547	6229	25739	25794	43211	43211					0.02288614237670572
LAQTHKIQL	9	Unmodified	_LAQTHKIQL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2799682617188	2	526.316566	1050.61858	-0.20552	-0.00010817	-0.34914	-0.00018376	-0.55465	-0.00029192	526.3163071643602	44.219	0.47391	44.256	44.035	44.509	0.0369					24	13	2	0	0	0	0.022587	1	4117	4117		84.916	20.708	1	451860	+		37548	21295	25740	25795	43212	43212					0.09529424605557324
LAQVDRPR	8	Unmodified	_LAQVDRPR_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7904052734375	2	477.777608	953.540663	-0.6201	-0.00029627	0.21712	0.00010373	-0.40298	-0.00019254	477.77744040150367	30.408	0.78895	30.482	30.045	30.834	0.074314					27	18	2	0	0	0	0.027866	1	1850	1850		88.643	5.3557	1	133860			37549	3413	25741	25796	43213	43213					0.062034117401822186
LAQVDRPR	8	Unmodified	_LAQVDRPR_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.777608	953.540663	-0.35823	-0.00017115	0.29144	0.00013924	-0.066792	-3.1912E-05	477.7774898744062	30.778	0.53573	30.778	30.426	30.961	0	0.14331	0.00016647	NaN	88.643	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118060			37550	3413	25741	25796							0.062034117401822186
LAQVDRPR	8	Unmodified	_LAQVDRPR_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	477.777608	953.540663	-0.099406	-4.7494E-05	-0.25382	-0.00012127	-0.35322	-0.00016876	477.77735140160917	30.636	0.49697	30.645	30.414	30.911	0.0086708	0.0095011	-0.00035455	NaN	88.643	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167480			37551	3413	25741	25796							0.062034117401822186
LAQVFIPSI	9	Unmodified	_LAQVFIPSI_					0	0	0			REV__nc|ENSG00000134851|Q9HC07-2|TMEM165	REV__nc|ENSG00000134851|Q9HC07-2|TMEM165	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.2967224121094	2	494.29731	986.580068	-0.08585	-4.2436E-05	-0.47769	-0.00023612	-0.56354	-0.00027856	494.2967758711202	101.6	1.1581	101.61	101.17	102.33	0.0090332					47	26	3	0	0	0	0.39228	1	12963	12963		66.429	8.618	1	625790	+		37552	23487	25742	25797	43214	43214					0.08624118971056305
LAQVSRAAGV	10	Unmodified	_LAQVSRAAGV_					0	0	0		nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.80572509765625	2	486.285266	970.555979	-0.12064	-5.8664E-05	-2.9049	-0.0014126	-3.0256	-0.0014713	486.2829704056269	35.072	0.43874	34.857	34.548	34.987	-0.21556					17	10	3	0	0	0	0.03519	1	2641	2641		51.193	5.2204	1	66139			37553	789	25743	25798	43215	43215					0.06952278537380607
LARAADPSVL	10	Unmodified	_LARAADPSVL_					0	0	0		ENST00000334286.7_1_13:78492715-78492892:-|nuORF	ENST00000334286.7_1_13:78492715-78492892:-|nuORF	ENST00000334286.7_1_13:78492715-78492892:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.79217529296875	2	506.792924	1011.57129	-1.2594	-0.00063826	-0.26687	-0.00013525	-1.5263	-0.00077351	506.79291152499354	44.294	1.3029	44.149	43.781	45.083	-0.14471					125	37	6	0	0	0	0.57594	2	4219	4219;4264		79.713	4.6693	1	119450000			37554	12381	25744	25799	43216;43217	43216					0.06597145334569632
LARAADPSVL	10	Unmodified	_LARAADPSVL_					0	0	0		ENST00000334286.7_1_13:78492715-78492892:-|nuORF	ENST00000334286.7_1_13:78492715-78492892:-|nuORF	ENST00000334286.7_1_13:78492715-78492892:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.7925109863281	2	506.792924	1011.57129	-0.35557	-0.0001802	-1.1749	-0.00059544	-1.5305	-0.00077565	506.79245433045855	44.155	1.3845	44.192	43.888	45.272	0.036903					127	39	6	0	0	0	0.50466	1	4150	4150		87.754	2.3948	1	117970000			37555	12381	25744	25799	43218	43218					0.06597145334569632
LARAARAAI	9	Unmodified	_LARAARAAI_					0	0	0			REV__ENST00000305877.12_2_22:23522425-23523292:+|nuORF	REV__ENST00000305877.12_2_22:23522425-23523292:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7561950683594	2	456.790518	911.566484	-0.20677	-9.4449E-05	0.25907	0.00011834	0.052301	2.3891E-05	456.7905311655756	31.489	0.49477	31.489	31.216	31.71	0					14	11	2	0	0	0	0.024436	1	2076	2076		23.042	0	1	78139	+		37556	30115	25745	25800	43219	43219					0.10716305982452923
LARALPLQP	9	Unmodified	_LARALPLQP_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2765197753906	2	489.808377	977.6022	0.024661	1.2079E-05	-0.23169	-0.00011348	-0.20702	-0.0001014	489.8079914872438	64.441	0.45503	64.487	64.225	64.68	0.045502					20	11	3	0	0	0	0.024319	1	7535	7535		56.721	21.103	1	90841			37557	6747	25746	25801	43220	43220					0.11250343439473909
LARALSLAKT	10	Unmodified	_LARALSLAKT_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__nc|ENSG00000133026|P35580|MYH10	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.802978515625	2	522.332216	1042.64988	0.075683	3.9532E-05	-0.52121	-0.00027224	-0.44553	-0.00023271	522.3317643913706	39.603	1.0603	39.377	38.874	39.934	-0.22584					64	27	4	0	0	0	0.03519	1	3390	3390		51.193	15.992	1	2437500	+		37558	21094;23338	25747	25802	43221	43221					0.13025997639647358
LARAQLRKWQQ	11	Unmodified	_LARAQLRKWQQ_					0	0	0		ENST00000233813.4_1_2:217541158-217541338:-|nuORF	ENST00000233813.4_1_2:217541158-217541338:-|nuORF	ENST00000233813.4_1_2:217541158-217541338:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.60797119140625	3	466.608993	1396.80515	0.67563	0.00031525	-2.6518	-0.0012373	-1.9761	-0.00092208	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0592	1	12498	12498		22.562	6.6409	1	1258700			37559	11247	25748	25803	43222	43222					0.12262041493931974
LARARRTE	8	Unmodified	_LARARRTE_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2033996582031	2	486.788507	971.562461	-0.44324	-0.00021577	4.0685	0.0019805	3.6253	0.0017647	486.7900157638337	39.468	0.5839	39.245	38.999	39.583	-0.22311					18	14	2	0	0	0	0.027866	1	3373	3373		31.955	11.473	1	205320			37560	5033	25749	25804	43223	43223					0.07554216488745169
LARARRTE	8	Unmodified	_LARARRTE_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3;nc|ENSG00000136636|Q9Y597-3|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.788507	971.562461	0.2131	0.00010374	3.4461	0.0016775	3.6592	0.0017813	486.78955835712514	39.428	0.59416	39.202	38.839	39.433	-0.2257	-0.021585	-0.00032992	NaN	31.955	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128990			37561	5033	25749	25804							0.07554216488745169
LARCPSETL	9	Unmodified	_LARCPSETL_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2576904296875	2	495.257859	988.501166	3.8409	0.0019022	-3.7642	-0.0018643	0.076688	3.7981E-05	495.255802398215	17.941	0.29726	17.698	17.527	17.825	-0.24299					12	5	3	0	0	0	0.92825	1	217	217		30.504	2.2494	1	91635	+		37562	36472	25750	25805	43224	43224					0.006455236744614012
LARCPSETL	9	Unmodified	_LARCPSETL_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.257859	988.501166	3.7846	0.0018743	3.9278	0.0019453	7.7124	0.0038196	495.2597097096907	17.82	0.39039	17.82	17.697	18.087	0	0.041311	0.003758	NaN	30.504	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59625	+		37563	36472	25750	25805							0.006455236744614012
LARCPSETL	9	Unmodified	_LARCPSETL_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.257859	988.501166	0.33558	0.0001662	7.485	0.003707	7.8205	0.0038732	495.2612658230556	17.984	0.44223	17.853	17.663	18.105	-0.13148	0.074149	0.0072814	NaN	30.504	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48219	+		37564	36472	25750	25805							0.006455236744614012
LARCPSETL	9	Unmodified	_LARCPSETL_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	495.257859	988.501166	0.78429	0.00038843	-0.91161	-0.00045148	-0.12732	-6.3054E-05	495.2572795219513	17.936	0.39838	17.782	17.557	17.955	-0.15403	0.0039598	-0.0010355	NaN	30.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98384	+		37565	36472	25750	25805							0.006455236744614012
LARCPSETL	9	Unmodified	_LARCPSETL_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.257859	988.501166	-0.055653	-2.7562E-05	-0.0022144	-1.0967E-06	-0.057867	-2.8659E-05	495.2577129159866	17.946	0.39791	17.739	17.564	17.962	-0.20669	-0.03952	-0.00013478	NaN	30.504	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64569	+		37566	36472	25750	25805							0.006455236744614012
LARCPSETL	9	Unmodified	_LARCPSETL_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	495.257859	988.501166	3.8409	0.0019022	-3.7642	-0.0018643	0.076688	3.7981E-05	495.255802398215	17.941	0.29726	17.698	17.527	17.825	-0.24299	-0.0799	-0.0038611	NaN	30.504	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91635	+		37567	36472	25750	25805							0.006455236744614012
LARDARAPGRG	11	Unmodified	_LARDARAPGRG_					0	0	0			REV__ENST00000396418.6_1_8:79428553-79428688:+|nuORF	REV__ENST00000396418.6_1_8:79428553-79428688:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7354736328125	2	570.323245	1138.63194	-0.068722	-3.9194E-05	1.3562	0.00077349	1.2875	0.00073429	570.8262782538784	40.107	0.45759	39.882	39.62	40.078	-0.225					20	11	3	0	0	0	0.024765	1	3454	3454		49.536	11.725	1	84318	+		37568	31734	25751	25806	43225	43225					0.06816675437494268
LARDEAPLI	9	Unmodified	_LARDEAPLI_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2875061035156	2	499.287474	996.560395	0.7385	0.00036872	-1.2764	-0.0006373	-0.53791	-0.00026857	499.2868437970992	55.686	1.1057	55.686	55.319	56.424	0					76	30	3	0	0	0	0.29158	1	6151	6151		76.774	2.5191	1	25199000	+		37569	36815	25752	25807	43226	43226					0.061977429602734446
LAREERHR	8	Unmodified	_LAREERHR_					0	0	0		ENSG00000165675|ENST00000394363|ENOX2;nc|ENSG00000165675|Q16206|ENOX2	ENSG00000165675|ENST00000394363|ENOX2	ENSG00000165675|ENST00000394363|ENOX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2697143554688	2	533.796863	1065.57917	-0.28445	-0.00015184	-2.0639	-0.0011017	-2.3484	-0.0012536	533.7950135394477	61.775	0.45283	61.562	61.209	61.662	-0.21375					13	10	2	0	0	0	0.027866	1	6933	6933		23.042	5.6775	1	67588			37570	7451	25753	25808	43227	43227					0.049007173746986155
LARESCGRRR	10	Unmodified	_LARESCGRRR_					0	0	0			REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.81134033203125	3	401.887762	1202.64146	-0.69969	-0.0002812	-3.8783	-0.0015586	-4.578	-0.0018398	401.88569993115743	29.017	0.77746	28.772	28.322	29.099	-0.24524					34	17	3	0	0	0	0.03519	1	1696	1696		23.378	3.0629	1	111150	+		37571	35779	25754	25809	43228	43228					0.04824120451394265
LARESCGRRR	10	Unmodified	_LARESCGRRR_					0	0	0			REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	401.887762	1202.64146	2.5812	0.0010374	1.8628	0.00074863	4.444	0.001786	401.88787333595775	28.649	0.21076	28.73	28.657	28.867	0.080811	-0.011042	0.0066818	NaN	23.378	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29728	+		37572	35779	25754	25809							0.04824120451394265
LARFDVILV	9	Unmodified	_LARFDVILV_					0	0	0		ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant;ENSG00000232040|ENST00000452236|SCAND3	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2998046875	2	523.32386	1044.63317	-0.61468	-0.00032167	-2.985	-0.0015621	-3.5997	-0.0018838	523.3218035603504	76.766	0.73267	76.538	76.121	76.853	-0.22843					29	17	3	0	0	0	0.023417	1	9436	9436		68.787	0	1	279770			37573	10703	25755	25810	43229	43229					0.1126349675369056
LARFLIKLE	9	Unmodified	_LARFLIKLE_					0	0	0		ENSG00000122970|ENST00000242591|IFT81;nc|ENSG00000122970|Q8WYA0-3|IFT81	ENSG00000122970|ENST00000242591|IFT81	ENSG00000122970|ENST00000242591|IFT81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.8180541992188	2	551.852784	1101.69102	-1.0575	-0.00058361	-3.9874	-0.0022005	-5.0449	-0.0027841	551.8506263924593	39.125	0.10558	39.026	38.949	39.054	-0.098755					4	2	2	0	0	0	0.024506	1	3320	3320		16.473	0	1	30257			37574	3950	25756	25811	43230	43230					0.14423758679117782
LARGEGDPL	9	Unmodified	_LARGEGDPL_					0	0	0			REV__ENST00000284984.7_1_21:28217444-28217693:-|nuORF	REV__ENST00000284984.7_1_21:28217444-28217693:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.25067138671875	2	464.248349	926.482145	-0.00033811	-1.5696E-07	3.8267	0.0017765	3.8263	0.0017764	464.25018018463044	47.819	1.9337	47.878	47.554	49.488	0.059093					181	54	5	0	0	0	0.29104	1	4844	4844		76.847	0.072494	1	146440000	+		37575	29911	25757	25812	43231	43231					0.01596310375032317
LARGGRGGQP	10	Unmodified	_LARGGRGGQP_					0	0	0			REV__ENST00000462361.1_1_22:45731157-45736283:+|nuORF	REV__ENST00000462361.1_1_22:45731157-45736283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7981262207031	2	484.772857	967.531161	0.060704	2.9428E-05	-1.6882	-0.00081839	-1.6275	-0.00078897	484.7736584656609	58.943	0.24983	59.029	58.884	59.134	0.085682					9	6	2	0	0	0	0.03519	1	6640	6640		42.396	0	1	65185	+		37576	32900	25758	25813	43232	43232					0.04609643454671186
LARGPTSLL	9	Unmodified	_LARGPTSLL_					0	0	0		nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2;ENSG00000158578|ENST00000650242|ALAS2	nc|ENSG00000158578|P22557-2|ALAS2	nc|ENSG00000158578|P22557-2|ALAS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.25067138671875	2	464.284734	926.554916	0.14796	6.8693E-05	-1.3259	-0.00061558	-1.1779	-0.00054689	464.28397176045996	48.069	0.64437	48.135	47.808	48.452	0.066795					27	17	2	0	0	0	0.022756	1	4844	4844		90.777	10.837	1	372660			37577	6687	25759	25814	43233	43233					0.0887006416847953
LARGRVALP	9	Unmodified	_LARGRVALP_					0	0	0			REV__ENSG00000189375|ENST00000405044|TBC1D28	REV__ENSG00000189375|ENST00000405044|TBC1D28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.7581481933594	2	476.806168	951.597784	0.17385	8.2894E-05	3.4612	0.0016503	3.635	0.0017332	476.8073620515442	101.18	0.40937	101.01	100.74	101.15	-0.17178					15	9	2	0	0	0	0.024487	1	12548	12548		24.203	3.7209	1	77689	+		37578	28118	25760	25815	43234	43234					0.12004879016558334
LARGRVALP	9	Unmodified	_LARGRVALP_					0	0	0			REV__ENSG00000189375|ENST00000405044|TBC1D28	REV__ENSG00000189375|ENST00000405044|TBC1D28	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.806168	951.597784	0.81787	0.00038997	2.4461	0.0011663	3.264	0.0015563	476.8069573234655	101.01	0.55405	101.01	100.82	101.37	0	0.01286	-0.00039342	NaN	24.203	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128400	+		37579	28118	25760	25815							0.12004879016558334
LARGRVALP	9	Unmodified	_LARGRVALP_					0	0	0			REV__ENSG00000189375|ENST00000405044|TBC1D28	REV__ENSG00000189375|ENST00000405044|TBC1D28	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.806168	951.597784	0.26871	0.00012812	3.0265	0.001443	3.2952	0.0015712	476.8072238015697	100.99	0.64154	101	100.79	101.43	0.0090256	0.0044714	0.00016002	NaN	24.203	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157210	+		37580	28118	25760	25815							0.12004879016558334
LARGRVALP	9	Unmodified	_LARGRVALP_					0	0	0			REV__ENSG00000189375|ENST00000405044|TBC1D28	REV__ENSG00000189375|ENST00000405044|TBC1D28	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.806168	951.597784	0.45969	0.00021918	2.7022	0.0012884	3.1618	0.0015076	476.8071061447951	101.16	0.55029	101.16	100.85	101.4	-0.0054398	0.15781	-0.00014926	NaN	24.203	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162850	+		37581	28118	25760	25815							0.12004879016558334
LARGVSRVN	9	Unmodified	_LARGVSRVN_					0	0	0			REV__ENST00000251269.9_1_19:44471378-44471552:+|nuORF	REV__ENST00000251269.9_1_19:44471378-44471552:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	486.290882	970.567212	-0.95674	-0.00046526	-2.3528	-0.0011442	-3.3096	-0.0016094	486.2893867898247	40.723	1.0284	40.746	39.942	40.97	0.023006					33	28	2	0	0	0	0.024381	1	3472	3472		37.159	11.709	1	392460	+		37582	29501	25761	25816	43235	43235					0.08075100631515397
LARHARLNA	9	Unmodified	_LARHARLNA_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.287353515625	2	511.304324	1020.5941	0.25963	0.00013275	-2.5332	-0.0012952	-2.2735	-0.0011625	511.3030254325227	58.586	0.21926	58.586	58.495	58.714	0					9	5	2	0	0	0	0.024436	1	6644	6644		23.042	2.5607	1	103140			37583	3177	25762	25817	43236	43236					0.08462209242691188
LARHLLLLT	9	Unmodified	_LARHLLLLT_					0	0	0			REV__ENSG00000182327|ENST00000331264|GLTPD2	REV__ENSG00000182327|ENST00000331264|GLTPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2792358398438	2	525.345126	1048.6757	-0.47114	-0.00024751	1.386	0.00072814	0.91488	0.00048063	525.3457802843026	87.257	0.12675	87.257	87.194	87.321	0					4	2	2	0	0	0	0.024541	1	10976	10976		12.207	0.69583	1	52846	+		37584	27469	25763	25818	43237	43237					0.15330891881944808
LARHYAIQV	9	Unmodified	_LARHYAIQV_					0	0	0			REV__nc|ENSG00000156983|P55201-3|BRPF1	REV__nc|ENSG00000156983|P55201-3|BRPF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2695922851562	2	535.808908	1069.60326	-1.7685	-0.0009476	-1.0041	-0.00053798	-2.7726	-0.0014856	535.8082865510336	29.516	0.28151	29.516	29.37	29.652	0					9	6	2	0	0	0	0.023596	1	1821	1821		63.306	0	1	24864	+		37585	25104	25764	25819	43238	43238					0.07124557808356258
LARIKWDP	8	Unmodified	_LARIKWDP_					0	0	0		nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.79010009765625	2	499.792727	997.5709	-0.6143	-0.00030702	-3.4206	-0.0017096	-4.0349	-0.0020166	499.7906710826299	29.483	1.1486	29.487	29.092	30.241	0.0031376					60	28	4	0	0	0	0.97924	1	1804	1804		40.573	1.3198	1	1862400			37586	5144	25765	25820	43239	43239					0.07201770405356456
LARKLFRPG	9	Unmodified	_LARKLFRPG_					0	0	0			REV__ENST00000472042.1_1_18:3457420-3457498:+|nuORF	REV__ENST00000472042.1_1_18:3457420-3457498:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2833862304688	2	529.335093	1056.65563	-0.89354	-0.00047298	0.52068	0.00027562	-0.37285	-0.00019736	529.3352026483419	48.039	0.75514	47.886	47.574	48.329	-0.153					49	22	3	0	0	0	0.024487	1	4919	4919		24.203	11.244	1	1121600	+		37587	33194	25766	25821	43240	43240					0.12957140941989564
LARKLFRPG	9	Unmodified	_LARKLFRPG_					0	0	0			REV__ENST00000472042.1_1_18:3457420-3457498:+|nuORF	REV__ENST00000472042.1_1_18:3457420-3457498:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.335093	1056.65563	-1.0769	-0.00057006	0.59234	0.00031354	-0.48461	-0.00025652	529.335235479555	47.951	0.72242	47.951	47.622	48.344	0	0.058046	6.7067E-05	NaN	24.203	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	887320	+		37588	33194	25766	25821							0.12957140941989564
LARKLFRPG	9	Unmodified	_LARKLFRPG_					0	0	0			REV__ENST00000472042.1_1_18:3457420-3457498:+|nuORF	REV__ENST00000472042.1_1_18:3457420-3457498:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.335093	1056.65563	-0.73579	-0.00038948	0.43126	0.00022828	-0.30453	-0.0001612	529.3351779941432	47.782	0.62912	47.841	47.554	48.183	0.059097	-0.051452	-0.00010346	NaN	24.203	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1181300	+		37589	33194	25766	25821							0.12957140941989564
LARKSIIP	8	Unmodified	_LARKSIIP_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2615966796875	2	449.297645	896.580737	-0.16597	-7.457E-05	0.34602	0.00015547	0.18005	8.0896E-05	449.2975920903061	41.038	0.65255	40.903	40.524	41.176	-0.13554					26	16	2	0	0	0	0.027866	1	3629	3629		79.451	23.947	1	260860			37590	3867	25767	25822	43241	43241					0.1283095841076829
LARKSIIP	8	Unmodified	_LARKSIIP_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.26165771484375	2	449.297645	896.580737	-0.7765	-0.00034888	0.2508	0.00011268	-0.5257	-0.0002362	449.2976486623301	41.311	0.84493	41.08	40.589	41.434	-0.2303					34	21	2	0	0	0	0.027866	1	3645	3645		102.77	23.322	1	191480			37591	3867	25767	25822	43242	43242					0.1283095841076829
LARKVTSL	8	Unmodified	_LARKVTSL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.2872314453125	2	444.287277	886.560001	-0.35017	-0.00015557	0.4248	0.00018873	0.074636	3.316E-05	444.2873883664341	35.371	0.69719	35.156	34.874	35.571	-0.21556					52	17	4	0	0	0	0.24001	3	2666	2666;2688;2700		133.81	18.354	1	4064900			37592	928	25768	25823	43243;43244;43245	43243					0.11218368031097725
LARKVTSL	8	Unmodified	_LARKVTSL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.2873840332031	2	444.287277	886.560001	-0.51599	-0.00022925	0.53284	0.00023674	0.016854	7.4881E-06	444.28743090040354	35.411	0.66032	35.199	34.924	35.584	-0.21246					50	16	4	0	0	0	0.32162	2	2692	2679;2692		108.09	5.4138	1	4290200			37593	928	25768	25823	43246;43247	43247					0.11218368031097725
LARKVTSL	8	Unmodified	_LARKVTSL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.28765869140625	2	444.287277	886.560001	-0.2733	-0.00012142	0.2181	9.6899E-05	-0.055201	-2.4525E-05	444.2872653789115	35.344	0.68591	35.158	34.835	35.521	-0.18675					49	17	4	0	0	0	0.24001	3	2662	2641;2651;2662		133.81	18.354	1	4007200			37594	928	25768	25823	43248;43249;43250	43250					0.11218368031097725
LARLELFVV	9	Unmodified	_LARLELFVV_					0	0	0		nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	530.331685	1058.64882	-0.91792	-0.0004868	0.42191	0.00022375	-0.49601	-0.00026305	530.3320841908768	40.009	0.11132	40.032	39.977	40.088	0.023006					4	2	2	0	0	0	0.024535	1	3424	3424		18.324	0	1	43477			37595	10700	25769	25824	43251	43251					0.12183783270756976
LARLFLYAL	9	Unmodified	_LARLFLYAL_					0	0	0		sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.2855834960938	2	540.334227	1078.6539	-1.2038	-0.00065046	-2.9451	-0.0015913	-4.1489	-0.0022418	540.3324447858331	40.611	0.4817	40.634	40.349	40.83	0.023006					22	13	3	0	0	0	0.024487	1	3492	3492		24.203	0	1	212690			37596	37947	25770	25825	43252	43252					0.1177208713336313
LARLKELV	8	Unmodified	_LARLKELV_					0	0	0			REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.3104248046875	2	471.310752	940.606951	0.050617	2.3856E-05	0.15338	7.229E-05	0.204	9.6146E-05	471.3106226993217	41.595	0.63646	41.459	41.137	41.774	-0.13554					42	16	4	0	0	0	0.27053	1	3680	3680		124.59	0	1	1744000	+		37597	27023	25771	25826	43253	43253					0.13427227582235446
LARLKELV	8	Unmodified	_LARLKELV_					0	0	0			REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	471.310752	940.606951	0.050617	2.3856E-05	0.15338	7.229E-05	0.204	9.6146E-05	471.3106226993217	41.595	0.63646	41.459	41.137	41.774	-0.13554	-0.051275	-8.8455E-05	NaN	124.59	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1744000	+		37598	27023	25771	25826							0.13427227582235446
LARLKELV	8	Unmodified	_LARLKELV_					0	0	0			REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.310752	940.606951	-0.21374	-0.00010074	0.32856	0.00015486	0.11483	5.412E-05	471.31066677082526	41.752	0.77051	41.524	41.275	42.046	-0.2278	0.013952	7.6677E-05	NaN	124.59	51	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1609300	+		37599	27023	25771	25826							0.13427227582235446
LARLKELV	8	Unmodified	_LARLKELV_					0	0	0			REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.310752	940.606951	-0.40694	-0.00019179	0.33852	0.00015955	-0.068414	-3.2244E-05	471.31072034762195	41.778	0.86481	41.548	41.274	42.139	-0.23029	0.037323	8.6066E-05	NaN	124.59	53	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1881700	+		37600	27023	25771	25826							0.13427227582235446
LARLKWTK	8	Unmodified	_LARLKWTK_					0	0	0			REV__ENSG00000160712|ENST00000368485|IL6R	REV__ENSG00000160712|ENST00000368485|IL6R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.28179931640625	2	508.324194	1014.63383	0.25199	0.00012809	-4.1861	-0.0021279	-3.9341	-0.0019998	508.823198176279	23.377	0.25752	23.175	23.061	23.318	-0.20193					11	5	3	0	0	0	0.027866	1	922	922		11.511	0	1	108830	+		37601	25339	25772	25827	43254	43254					0.1271033619341324
LARLPALAE	9	Unmodified	_LARLPALAE_					0	0	0			REV__ENSG00000040608|ENST00000043402|RTN4R	REV__ENSG00000040608|ENST00000043402|RTN4R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7774963378906	2	477.292559	952.570566	-0.077654	-3.7064E-05	0.38637	0.00018441	0.30871	0.00014735	477.29208348936305	27.707	0.64784	27.694	27.5	28.148	-0.012983					24	16	2	0	0	0	0.024209	1	1527	1527		56.721	26.217	1	126370	+		37602	20092	25773	25828	43255	43255					0.09238350685495789
LARLPNHSL	9	Unmodified	_LARLPNHSL_					0	0	0			REV__ENSG00000261594|ENST00000562197|TPBGL	REV__ENSG00000261594|ENST00000562197|TPBGL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2779235839844	2	510.801083	1019.58761	-0.53879	-0.00027521	-2.9169	-0.00149	-3.4557	-0.0017652	510.79951697057675	73.286	0.20435	73.022	72.894	73.099	-0.26479					8	4	2	0	0	0	0.024319	1	8607	8607		39.253	0	1	190930	+		37603	29115	25774	25829	43256	43256					0.07860271291315257
LARLQVAL	8	Unmodified	_LARLQVAL_					0	0	0		nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-3|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.2899475097656	2	442.28982	882.565087	-0.67475	-0.00029844	0.36818	0.00016284	-0.30657	-0.00013559	442.2898630199598	44.554	0.86802	44.342	44.081	44.949	-0.21156					61	22	4	0	0	0	0.52467	1	4169	4169		83.287	1.0467	1	5134100			37604	5514	25775	25830	43257	43257					0.11910671893701874
LARLVRNIS	9	Unmodified	_LARLVRNIS_					0	0	0			REV__nc|ENSG00000106331|O43316-2|PAX4	REV__nc|ENSG00000106331|O43316-2|PAX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8126220703125	2	521.330008	1040.64546	-0.35636	-0.00018578	0.71128	0.00037081	0.35492	0.00018503	521.3295784910395	41.427	0.39005	41.427	41.225	41.615	0					18	10	3	0	0	0	0.024506	1	3734	3734		6.3127	0	1	166260	+		37605	21611	25776	25831	43258	43258					0.12676533216745156
LARNAAHA	8	Unmodified	_LARNAAHA_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.2308044433594	2	412.230294	822.446034	0.074438	3.0686E-05	0.64002	0.00026383	0.71445	0.00029452	412.23051145257693	27.319	2.4518	27.306	26.415	28.867	-0.012983					153	61	4	0	0	0	1.0133	2	1471	1471;1495		35.201	1.0282	1	6937900			37606	4410	25777	25832	43259;43260	43259					0.027708979888416252
LARNKDIAE	9	Unmodified	_LARNKDIAE_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2880859375	2	515.288005	1028.56146	-0.55678	-0.0002869	0.027367	1.4102E-05	-0.52941	-0.0002728	515.2880152450967	40.101	1.9114	39.951	39.553	41.464	-0.1497					97	50	4	0	0	0	0.29158	1	3461	3461		76.774	4.8967	1	21703000	+		37607	21657	25778	25833	43261	43261					0.04831957329179204
LARNKDIAE	9	Unmodified	_LARNKDIAE_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2882690429688	2	515.288005	1028.56146	-0.11251	-5.7977E-05	0.2165	0.00011156	0.10398	5.3581E-05	515.2878389684613	40.259	1.3129	40.034	39.696	41.009	-0.225					100	34	6	0	0	0	0.29158	3	3447	3447;3459;3485		76.774	10.345	1	20784000	+		37608	21657	25778	25833	43262;43263;43264	43262					0.04831957329179204
LARNKDIAE	9	Unmodified	_LARNKDIAE_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	515.288005	1028.56146	-0.11251	-5.7977E-05	0.2165	0.00011156	0.10398	5.3581E-05	515.2878389684613	40.259	1.3129	40.034	39.696	41.009	-0.225	0.029041	1.5881E-05	NaN	76.774	100	34	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20784000	+		37609	21657	25778	25833							0.04831957329179204
LARNYFAT	8	Unmodified	_LARNYFAT_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7718200683594	2	478.253434	954.492316	0.13977	6.6844E-05	3.4643	0.0016568	3.6041	0.0017237	478.2553302978725	24.509	0.61921	24.509	24.166	24.786	0					24	13	3	0	0	0	0.027866	1	1101	1101		20.482	6.7065	1	60468	+		37610	23968	25779	25834	43265	43265					0.01324918100283412
LARNYFAT	8	Unmodified	_LARNYFAT_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.253434	954.492316	-0.86338	-0.00041291	10.672	0.0051041	9.8089	0.0046911	478.2556732213653	24.511	0.44952	24.463	24.264	24.714	-0.047148	-0.037034	0.0064149	NaN	8.2313	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54704	+		37611	23968	25779	25834							0.01324918100283412
LARPAACPGS	10	Unmodified	_LARPAACPGS_					0	0	0		ENST00000566847.1_1_10:101380836-101380998:+|nuORF	ENST00000566847.1_1_10:101380836-101380998:+|nuORF	ENST00000566847.1_1_10:101380836-101380998:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.77728271484375	2	471.744919	941.475285	-0.60481	-0.00028532	0.24591	0.00011601	-0.3589	-0.00016931	471.7427939994441	29.071	0.41274	29.071	28.736	29.149	0					13	9	2	0	0	0	0.03519	1	1755	1755		66.429	9.7082	1	22961			37612	16948	25780	25835	43266	43266					0.002206742228281655
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.3367614746094	2	490.33677	978.658987	-0.33209	-0.00016284	0.16537	8.1086E-05	-0.16672	-8.1751E-05	490.33674210402376	81.489	0.89236	81.489	81.057	81.95	0					68	21	5	0	0	0	0.36105	1	10132	10132		68.485	0	1	6618100			37613	9320	25781	25836	43267	43267					0.16880390996004735
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	490.33677	978.658987	-0.76518	-0.0003752	0.60352	0.00029593	-0.16166	-7.9269E-05	490.33693800440835	81.489	3.0366	81.513	81.167	84.203	0.023911	0.017107	0.00024108	NaN	68.485	163	71	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6141800			37614	9320	25781	25836							0.16880390996004735
LARPGGIYTL	10	Unmodified	_LARPGGIYTL_					0	0	0		ENST00000376259.6_1_1:12227075-12248914:+|nuORF	ENST00000376259.6_1_1:12227075-12248914:+|nuORF	ENST00000376259.6_1_1:12227075-12248914:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8095703125	2	530.811116	1059.60768	0.27337	0.00014511	-4.1593	-0.0022078	-3.886	-0.0020627	530.808694806215	103.87	0.53911	103.7	103.44	103.98	-0.16791					27	12	3	0	0	0	1.0508	1	12895	12895		39.253	3.6345	1	353020			37615	13176	25782	25837	43268	43268					0.08026022231297247
LARPTSSNSL	10	Unmodified	_LARPTSSNSL_					0	0	0			REV__ENST00000310473.7_1_11:73688035-73688987:-|nuORF	REV__ENST00000310473.7_1_11:73688035-73688987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.279052734375	2	523.285463	1044.55637	-2.0023	-0.0010478	1.5694	0.00082123	-0.43296	-0.00022656	523.2863084544947	37.865	0.56648	37.865	37.632	38.199	0					42	16	3	0	0	0	0.45418	1	3145	3145		93.143	7.9824	1	8389000	+		37616	30185	25783	25838	43269	43269					0.03587653466570373
LARPTSSNSL	10	Unmodified	_LARPTSSNSL_					0	0	0			REV__ENST00000310473.7_1_11:73688035-73688987:-|nuORF	REV__ENST00000310473.7_1_11:73688035-73688987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2781982421875	2	523.285463	1044.55637	-1.1901	-0.00062274	0.26818	0.00014033	-0.92189	-0.00048241	523.2856534320678	37.942	0.86172	37.969	37.71	38.572	0.027275					68	24	3	0	0	0	0.45418	1	3102	3102		93.143	2.7734	1	7282300	+		37617	30185	25783	25838	43270	43270					0.03587653466570373
LARQFKAIK	9	Unmodified	_LARQFKAIK_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1;ENSG00000130558|ENST00000371793|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.780517578125	2	537.842751	1073.67095	-1.2742	-0.00068531	0.14895	8.0111E-05	-1.1252	-0.0006052	537.8428146064363	35.676	0.38979	35.676	35.38	35.769	0					16	9	2	0	0	0	0.024436	1	2736	2736		38.806	3.6054	1	72204			37618	18267	25784	25839	43271	43271					0.13706007739165216
LARRAVSL	8	Unmodified	_LARRAVSL_					0	0	0			REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF	REV__ENST00000483657.1_1_2:97755791-97757446:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.266845703125	2	443.285069	884.555585	-0.35746	-0.00015846	-3.3207	-0.001472	-3.6781	-0.0016305	443.28298704684755	29.638	0.24082	29.641	29.551	29.792	0.0031376					6	5	2	0	0	0	0.027866	1	1819	1819		25.45	6.0902	1	11534	+		37619	22163	25785	25840	43272	43272					0.10868903608184155
LARRFCNL	8	Unmodified	_LARRFCNL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7182312011719	2	496.776554	991.538554	-0.48368	-0.00024028	0.60119	0.00029866	0.11751	5.8375E-05	496.77645843967787	28.103	0.52922	28.098	27.929	28.458	-0.0042019					15	12	2	0	0	0	0.027866	1	1579	1579		31.955	0	1	34744	+		37620	21027	25786	25841	43273	43273					0.04244659730716194
LARRNAEVF	9	Unmodified	_LARRNAEVF_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000393501.5_1_3:124103736-124207203:+|nuORF	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8372802734375	2	538.30399	1074.59343	1.8429	0.00099202	1.0613	0.0005713	2.9042	0.0015633	538.304353721819	18.505	0.43963	18.505	18.284	18.724	0					18	8	3	0	0	0	0.024523	1	289	289		37.159	14.117	1	104000			37621	6785	25787	25842	43274	43274					0.05911369802970512
LARRNAEVF	9	Unmodified	_LARRNAEVF_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000393501.5_1_3:124103736-124207203:+|nuORF	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.30399	1074.59343	1.8105	0.0009746	8.4269	0.0045362	10.237	0.0055108	538.3086000451005	18.791	0.29773	18.549	18.424	18.722	-0.24256	-0.016997	0.00046741	NaN	37.159	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40778			37622	6785	25787	25842							0.05911369802970512
LARRRGPA	8	Unmodified	_LARRRGPA_					0	0	0		ENST00000460939.5_1_11:62369776-62370417:-|nuORF;nc|ENSG00000149499|Q32P44-2|EML3	ENST00000460939.5_1_11:62369776-62370417:-|nuORF;nc|ENSG00000149499|Q32P44-2|EML3	nc|ENSG00000149499|Q32P44-2|EML3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.7510681152344	2	448.780485	895.546417	0.49566	0.00022244	-3.599	-0.0016151	-3.1033	-0.0013927	448.77889527837544	20.937	0.19691	20.741	20.632	20.828	-0.19577					5	3	2	0	0	0	0.027866	1	593	593		9.4706	0.64823	1	12900			37623	14668;18376	25788	25843	43275	43275					0.09446555042518412
LARRTNSTF	9	Unmodified	_LARRTNSTF_					0	0	0		ENST00000552851.1_1_19:49119841-49122400:-|nuORF;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000547892.1_1_19:49120227-49120731:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000552851.1_1_19:49119841-49122400:-|nuORF	ENST00000552851.1_1_19:49119841-49122400:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2930908203125	2	533.293622	1064.57269	-0.59478	-0.00031719	0.13046	6.9572E-05	-0.46432	-0.00024762	533.2935839798809	24.626	0.56864	24.452	24.252	24.821	-0.17484					36	12	5	0	0	0	0.92825	1	1093	1093		30.504	0	1	1079400			37624	1259	25789	25844	43276	43276					0.042987794233113164
LARRVRPG	8	Unmodified	_LARRVRPG_					0	0	0			REV__nc|ENSG00000151651|P78325-3|ADAM8	REV__nc|ENSG00000151651|P78325-3|ADAM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2332763671875	2	462.796135	923.577717	-0.34157	-0.00015808	3.011	0.0013935	2.6694	0.0012354	462.79728661717866	54.304	0.79832	54.304	53.726	54.524	0					32	22	2	0	0	0	0.027866	1	5849	5849		26.796	7.4361	1	441460	+		37625	24785	25790	25845	43277	43277					0.11287128076617137
LARRVRPG	8	Unmodified	_LARRVRPG_					0	0	0			REV__nc|ENSG00000151651|P78325-3|ADAM8	REV__nc|ENSG00000151651|P78325-3|ADAM8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.796135	923.577717	0.072772	3.3679E-05	2.5584	0.001184	2.6312	0.0012177	462.7971397314326	54.445	0.87117	54.294	53.636	54.507	-0.15036	0.016801	0.00015933	NaN	26.796	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290890	+		37626	24785	25790	25845							0.11287128076617137
LARRVRPG	8	Unmodified	_LARRVRPG_					0	0	0			REV__nc|ENSG00000151651|P78325-3|ADAM8	REV__nc|ENSG00000151651|P78325-3|ADAM8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.796135	923.577717	1.1433	0.00052912	1.6607	0.00076858	2.804	0.0012977	462.79676938623345	54.136	0.58455	54.234	53.94	54.525	0.098015	-0.043092	-0.00067152	NaN	26.796	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421170	+		37627	24785	25790	25845							0.11287128076617137
LARSLGYTGY	10	Unmodified	_LARSLGYTGY_					0	0	0		nc|ENSG00000215845|Q8NFU3-3|TSTD1	nc|ENSG00000215845|Q8NFU3-3|TSTD1	nc|ENSG00000215845|Q8NFU3-3|TSTD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2982788085938	2	550.790381	1099.56621	-0.44419	-0.00024465	3.2126	0.0017695	2.7684	0.0015248	550.7924425396428	54.57	0.21434	54.424	54.245	54.459	-0.14609					12	5	3	0	0	0	0.03519	1	5814	5814		32.812	3.6629	1	1629100			37628	18724	25791	25846	43278	43278					0.02040841471944077
LARSPLRP	8	Unmodified	_LARSPLRP_					0	0	0		ENST00000280758.9_2_12:107712233-107712596:+|nuORF	ENST00000280758.9_2_12:107712233-107712596:+|nuORF	ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2431335449219	2	455.285069	908.555585	-0.14903	-6.7851E-05	-1.0582	-0.00048178	-1.2072	-0.00054963	455.2844855839742	36.637	0.55791	36.675	36.444	37.002	0.038044					19	14	2	0	0	0	0.027866	1	2874	2874		82.305	11.009	1	59552			37629	11718	25792	25847	43279	43279					0.09764903608174791
LARSPLRP	8	Unmodified	_LARSPLRP_					0	0	0		ENST00000280758.9_2_12:107712233-107712596:+|nuORF	ENST00000280758.9_2_12:107712233-107712596:+|nuORF	ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.285069	908.555585	0.12667	5.7671E-05	-1.0399	-0.00047346	-0.91326	-0.00041579	455.28480776501	36.683	0.20313	36.478	36.363	36.566	-0.20518	-0.098753	1.1481E-05	NaN	113.41	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84022			37630	11718	25792	25847							0.09764903608174791
LARSRLRA	8	Unmodified	_LARSRLRA_					0	0	0			REV__ENST00000333896.5_1_2:54785617-54785935:+|nuORF	REV__ENST00000333896.5_1_2:54785617-54785935:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7743835449219	2	471.801417	941.588282	0.12245	5.7772E-05	2.7664	0.0013052	2.8888	0.001363	471.8025338347729	36.729	0.60593	36.767	36.511	37.117	0.038044					35	15	3	0	0	0	0.027866	1	2930	2930		31.955	0	1	903470	+		37631	30509	25793	25848	43280	43280					0.11515110731045297
LARSRLRN	8	Unmodified	_LARSRLRN_					0	0	0			REV__ENSG00000174348|ENST00000312553|PODN	REV__ENSG00000174348|ENST00000312553|PODN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2618103027344	2	493.304324	984.594095	0.92216	0.0004549	1.8433	0.0009093	2.7654	0.0013642	493.3051517335469	70.856	0.73906	70.563	70.292	71.031	-0.29291					39	17	3	0	0	0	0.027866	1	8585	8585		51.193	5.2204	1	392810	+		37632	26856	25794	25849	43281	43281					0.10118209242705234
LARTKEEV	8	Unmodified	_LARTKEEV_					0	0	0			REV__ENSG00000176907|ENST00000315792|TCIM	REV__ENSG00000176907|ENST00000315792|TCIM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.25347900390625	2	473.271824	944.529095	0.055432	2.6234E-05	-0.63718	-0.00030156	-0.58174	-0.00027532	473.27146240752995	30.739	0.58195	30.749	30.416	30.998	0.010296					19	13	2	0	0	0	0.027866	1	1971	1971		17.365	0	1	318420	+		37633	27059	25795	25850	43282	43282					0.05461169926184084
LARTLHLP	8	Unmodified	_LARTLHLP_					0	0	0		ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7587890625	2	460.787444	919.560336	-0.31316	-0.0001443	0.27624	0.00012729	-0.036912	-1.7009E-05	460.78742103603247	32.292	1.9621	32.292	30.717	32.679	0					102	48	3	0	0	0	0.027866	1	2015	2015		17.365	0	1	1360500			37634	8544	25796	25851	43283	43283					0.09733787750928968
LARVPKKLLMM	11	Unmodified	_LARVPKKLLMM_					0	0	0		ENST00000488906.1_1_17:45236559-45237015:-|nuORF	ENST00000488906.1_1_17:45236559-45237015:-|nuORF	ENST00000488906.1_1_17:45236559-45237015:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2562255859375	3	433.938295	1298.79305	0.10663	4.6273E-05	0.40214	0.0001745	0.50877	0.00022078	434.27268565122284	102.82	0.72632	102.83	102.63	103.35	0.0054245					22	17	2	0	0	0	0.024772	1	13197	13197		10.104	0	1	573350			37635	15396	25797	25852	43284	43284					0.15560965434883656
LARVPVILD	9	Unmodified	_LARVPVILD_					0	0	0		nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3163146972656	2	498.316035	994.617516	0.051568	2.5697E-05	-0.17377	-8.6593E-05	-0.1222	-6.0896E-05	498.315858433549	67.171	1.2354	67.195	66.812	68.047	0.023903					61	30	3	0	0	0	0.4752	1	7911	7911		60.972	3.1607	1	4980500			37636	18453	25798	25853	43285	43285					0.11999210236660929
LARVQSPI	8	Unmodified	_LARVQSPI_					0	0	0			REV__nc|ENSG00000204410|O43196-4|MSH5	REV__nc|ENSG00000204410|O43196-4|MSH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.27166748046875	2	442.271627	882.528701	-0.54482	-0.00024096	0.63226	0.00027963	0.087436	3.867E-05	442.27175649291655	46.578	1.1729	46.425	45.988	47.161	-0.15301					81	31	4	0	0	0	0.34196	1	4595	4595		105.27	5.8938	1	4275300	+		37637	37078	25799	25854	43286	43286					0.08273794997001005
LARVQSPI	8	Unmodified	_LARVQSPI_					0	0	0			REV__nc|ENSG00000204410|O43196-4|MSH5	REV__nc|ENSG00000204410|O43196-4|MSH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2716064453125	2	442.271627	882.528701	0.042251	1.8687E-05	0.084828	3.7517E-05	0.12708	5.6204E-05	442.27152393372546	46.412	0.93131	46.464	46.167	47.099	0.051395					73	25	4	0	0	0	0.43637	1	4526	4526		92.191	7.2751	1	4408000	+		37638	37078	25799	25854	43287	43287					0.08273794997001005
LARVTAVLVV	10	Unmodified	_LARVTAVLVV_					0	0	0			REV__MTHFD1|p.G792Afs*5|1|0.26|ENSG00000100714|chr14:64449536-64449536|G/-|frameshift_variant;REV__ENSG00000120254|ENST00000367321|MTHFD1L	REV__ENSG00000120254|ENST00000367321|MTHFD1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2640991210938	2	520.844959	1039.67537	-0.75491	-0.00039319	3.4183	0.0017804	2.6634	0.0013872	520.8465532019397	56.406	0.32325	56.406	56.174	56.497	0					12	8	2	0	0	0	0.03519	1	6260	6260		44.117	29.98	1	91953	+		37639	22519;21144	25800	25855	43288	43288					0.15711472162092832
LARVTVIAW	9	Unmodified	_LARVTVIAW_					0	0	0		MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|15|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.304443359375	2	514.816202	1027.61785	-0.0018286	-9.414E-07	-4.1765	-0.0021501	-4.1783	-0.0021511	514.8142536953936	95.526	1.1392	95.529	95.095	96.234	0.0028687					43	26	4	0	0	0	0.024381	1	12170	12170		37.159	14.579	1	188750			37640	17981	25801	25856	43289	43289					0.10514629956514909
LARVWGQL	8	Unmodified	_LARVWGQL_					0	0	0			REV__ENST00000470411.2_1_16:625978-626500:+|nuORF	REV__ENST00000470411.2_1_16:625978-626500:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.77728271484375	2	471.779619	941.544686	-0.60937	-0.00028749	-2.712	-0.0012795	-3.3214	-0.001567	471.7782556024808	29.042	0.60992	29.042	28.613	29.223	0					46	14	4	0	0	0	0.52467	1	1755	1755		83.287	3.8362	1	2291600	+		37641	33156	25802	25857	43290	43290					0.07157501233893981
LARVWGQL	8	Unmodified	_LARVWGQL_					0	0	0			REV__ENST00000470411.2_1_16:625978-626500:+|nuORF	REV__ENST00000470411.2_1_16:625978-626500:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	471.779619	941.544686	-0.13697	-6.4618E-05	-3.4351	-0.0016206	-3.5721	-0.0016852	471.7779114719396	29.016	0.57261	29.019	28.631	29.204	0.0031376	0.054323	-0.0001629	NaN	83.287	41	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2426600	+		37642	33156	25802	25857							0.07157501233893981
LARVWRRA	8	Unmodified	_LARVWRRA_					0	0	0			REV__ENSG00000171861|ENST00000304478|MRM3	REV__ENSG00000171861|ENST00000304478|MRM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7907104492188	2	514.317235	1026.61992	-0.42085	-0.00021645	-1.0823	-0.00055665	-1.5032	-0.00077311	514.316355196303	41.659	0.66581	41.682	41.324	41.99	0.023006					39	18	3	0	0	0	0.027866	1	3662	3662		33.516	1.5607	1	1077500	+		37643	26610	25803	25858	43291	43291					0.10767103485000007
LARYVRILPVA	11	Unmodified	_LARYVRILPVA_					0	0	0		ENST00000560937.1_1_15:89442628-89444976:-|nuORF;nc|ENSG00000140545|Q08431-2|MFGE8;nc|ENSG00000140545|Q08431-3|MFGE8;nc|ENSG00000140545|Q08431-4|MFGE8;ENSG00000140545|ENST00000268150|MFGE8	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	ENST00000560937.1_1_15:89442628-89444976:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.7266845703125	3	424.271319	1269.79213	-0.63607	-0.00026987	-2.1993	-0.00093311	-2.8354	-0.001203	424.2703739627356	34.128	0.65854	34.128	33.894	34.552	0					35	16	3	0	0	0	0.024821	1	2550	2550		19.263	1.4295	1	146260			37644	5424	25804	25859	43292	43292					0.16802210381842997
LASAIEAAYF	10	Unmodified	_LASAIEAAYF_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3;REV__nc|ENSG00000118515|O00141-3|SGK1	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8239135742188	2	528.274032	1054.53351	-0.31207	-0.00016486	3.1958	0.0016882	2.8837	0.0015234	528.275865351124	61.355	0.55543	61.129	60.86	61.415	-0.22663					23	14	2	0	0	0	0.03519	1	7092	7092		29.15	4.9468	1	143360	+		37645	21424;36604	25805	25860	43293	43293					0.008426343491009902
LASALIPISAS	11	Unmodified	_LASALIPISAS_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8130493164062	2	521.810782	1041.60701	-0.20542	-0.00010719	3.996	0.0020852	3.7906	0.001978	521.8128611872344	41.5	0.74377	41.377	40.943	41.687	-0.12318					72	20	4	0	0	0	1.018	1	3703	3703		32.812	0	1	15953000	+		37646	22351	25806	25861	43294	43294					0.0878718279154782
LASANPLRQ	9	Unmodified	_LASANPLRQ_					0	0	0			REV__nc|ENSG00000254685|O14772-2|FPGT	REV__nc|ENSG00000254685|O14772-2|FPGT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2772521972656	2	485.277441	968.540328	0.12179	5.91E-05	0.63001	0.00030573	0.75179	0.00036483	485.27776355290143	42.081	0.78016	42.081	41.825	42.605	0					47	22	3	0	0	0	0.12602	2	3851	3839;3851		104.75	8.9314	1	4627800	+		37647	29058	25807	25862	43295;43296	43296					0.05479992020332247
LASAPVLPPL	10	Unmodified	_LASAPVLPPL_					0	0	0			REV__ENSG00000179284|ENST00000317060|DAND5	REV__ENSG00000179284|ENST00000317060|DAND5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2705078125	2	489.305136	976.595718	-1.1601	-0.00056766	3.1135	0.0015235	1.9534	0.0009558	489.30679993102126	39.271	0.35669	39.295	39.028	39.385	0.023727					21	9	3	0	0	0	0.03519	1	3280	3280		55.504	2.1528	1	200770	+		37648	27253	25808	25863	43297	43297					0.10648405488097978
LASARTPAI	9	Unmodified	_LASARTPAI_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2687072753906	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.59099	1	3185	3185		53.351	2.016	1	141320000			37649	7760	25809	25864	43298	43298					0.07029491134358068
LASDATNQL	9	Unmodified	_LASDATNQL_					0	0	0			REV__ENSG00000177483|ENST00000316997|RBM44	REV__ENSG00000177483|ENST00000316997|RBM44	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7379150390625	2	466.737814	931.461075	-0.48767	-0.00022762	0.15992	7.4641E-05	-0.32775	-0.00015297	466.73784110464123	45.208	0.9959	45.059	44.763	45.759	-0.1488					63	28	4	0	0	0	0.072054	1	4353	4353		120.62	5.1269	1	9270800	+		37650	27118	25810	25865	43299	43299					-0.0073969972447684995
LASDDRSCVL	10	Unmodified	_LASDDRSCVL_					0	0	0			REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.8056640625	2	539.763506	1077.51246	-0.7231	-0.0003903	-0.75194	-0.00040587	-1.475	-0.00079617	540.2639108120767	41.218	0.56354	41.241	40.934	41.498	0.023006					22	15	2	0	0	0	0.03519	1	3667	3667		67.494	12.717	1	105710	+		37651	24491	25811	25866	43300	43300					-0.02319699022086752
LASEIRSNF	9	Unmodified	_LASEIRSNF_					0	0	0		nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.75634765625	2	518.774731	1035.53491	-0.56976	-0.00029557	-1.4823	-0.00076899	-2.0521	-0.0010646	518.7740517292181	35.504	0.20188	35.288	35.216	35.418	-0.21555					5	4	2	0	0	0	0.022882	1	2706	2706		75.043	23.708	1	33323			37652	8295	25812	25867	43301	43301					0.018562684378366612
LASEIRSNF	9	Unmodified	_LASEIRSNF_					0	0	0		nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7565307617188	2	518.774731	1035.53491	-0.40293	-0.00020903	-2.818	-0.0014619	-3.2209	-0.0016709	518.7735417051628	35.387	0.19743	35.201	35.023	35.22	-0.18675					5	4	2	0	0	0	0.022587	1	2658	2658		74.255	0	1	24129			37653	8295	25812	25867	43302	43302					0.018562684378366612
LASFVLVNLTG	11	Unmodified	_LASFVLVNLTG_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3300170898438	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.013	2	11457	11457;11552		33.922	6.0394	1	14057000			37654	8375	25813	25868	43303;43304	43303					0.0881915819995811
LASFVLVNLTG	11	Unmodified	_LASFVLVNLTG_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.32958984375	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.013	3	11209	11065;11209;11319		33.922	6.8743	1	17705000			37655	8375	25813	25868	43305;43306;43307	43306					0.0881915819995811
LASFVLVNLTG	11	Unmodified	_LASFVLVNLTG_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3301391601562	2	567.331882	1132.64921	-0.10765	-6.1074E-05	-3.625	-0.0020566	-3.7326	-0.0021176	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.0075	1	10858	10858		35.152	4.8343	1	5896300			37656	8375	25813	25868	43308	43308					0.0881915819995811
LASFVLVNLTG	11	Unmodified	_LASFVLVNLTG_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.013	3	11271	11271;11295;11419		33.922	3.418	1	19210000			37657	8375	25813	25868	43309;43310;43311	43309					0.0881915819995811
LASGKSALV	9	Unmodified	_LASGKSALV_					0	0	0		nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.25830078125	2	423.258185	844.501818	0.49409	0.00020913	-0.055377	-2.3439E-05	0.43871	0.00018569	423.2580081587054	19.369	0.49463	19.208	19.034	19.529	-0.16079					22	9	4	0	0	0	0.39228	1	420	420		66.429	0.6261	1	302170			37658	6634	25814	25869	43312	43312					0.07334686385809164
LASGKSALV	9	Unmodified	_LASGKSALV_					0	0	0		nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	nc|ENSG00000157985|Q9UPQ3-2|AGAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	423.258185	844.501818	0.93231	0.00039461	-0.65316	-0.00027646	0.27915	0.00011815	423.2579401429384	19.481	0.2494	19.28	19.156	19.405	-0.2001	0.036144	-0.0003484	NaN	66.429	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15096			37659	6634	25814	25869							0.07334686385809164
LASGLSWQL	9	Unmodified	_LASGLSWQL_					0	0	0		ENST00000444465.1_1_6:166401068-166401386:-|nuORF	ENST00000444465.1_1_6:166401068-166401386:-|nuORF	ENST00000444465.1_1_6:166401068-166401386:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7716979980469	2	487.768917	973.523281	-0.38478	-0.00018769	0.63884	0.0003116	0.25405	0.00012392	487.7689030725761	79.786	0.58997	79.786	79.53	80.12	0					25	13	3	0	0	0	0.62163	1	9911	9911		51.335	0	1	451690			37660	14422	25815	25870	43313	43313					0.03546071414530161
LASGMLLVAL	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))LASGM(Oxidation (M))LLVAL_		LASGM(1)LLVAL		LASGM(74)LLVAL	1	0	1		ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000255974|ENST00000301141|CYP2A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3036499023438	2	523.301736	1044.58892	-0.1291	-6.7557E-05	3.9895	0.0020877	3.8604	0.0020202	523.3035799805069	90.117	1.1937	90.1	89.795	90.989	-0.016716					66	28	4	0	0	0	0.62679	1	11353	11353		73.975	7.5455	1	1192700			37661	10900	25816	25871	43314	43314		457			0.06840724545213561
LASGMLLVAL	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))LASGM(Oxidation (M))LLVAL_		LASGM(1)LLVAL		LASGM(46)LLVAL	1	0	1		ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000255974|ENST00000301141|CYP2A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.301736	1044.58892	0.82974	0.00043421	2.4108	0.0012616	3.2405	0.0016958	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.0004	1	10422	10422		45.952	11.779	1	3893600			37662	10900	25816	25871	43315	43315		457			0.06840724545213561
LASIFPSSAS	10	Unmodified	_LASIFPSSAS_					0	0	0		ENST00000443642.1_1_1:155288152-155293872:-|nuORF	ENST00000443642.1_1_1:155288152-155293872:-|nuORF	ENST00000443642.1_1_1:155288152-155293872:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.25762939453125	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	1.0992	1	13156	13156		32.812	4.9302	1	4976900			37663	14404	25817	25872	43316	43316					0.012100613149982564
LASIQVVDIN	10	Unmodified	_LASIQVVDIN_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3060913085938	2	536.305864	1070.59717	0.18707	0.00010033	0.18793	0.00010079	0.375	0.00020111	536.3058511085914	78.361	1.8685	78.169	77.891	79.76	-0.1921					72	44	3	0	0	0	1.0236	1	9666	9666		42.864	11.334	1	1704400			37664	843	25818	25873	43317	43317					0.06469994786198185
LASKKPKR	8	Unmodified	_LASKKPKR_					0	0	0		nc|ENSG00000102858|O60291|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291|MGRN1	nc|ENSG00000102858|O60291|MGRN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2722473144531	2	464.308544	926.602535	-0.12355	-5.7365E-05	2.6732	0.0012412	2.5497	0.0011838	464.30984341614345	19.624	0.24279	19.505	19.397	19.64	-0.11872					6	4	2	0	0	0	0.027866	1	439	439		55.504	16.698	1	8622.3			37665	2434	25819	25874	43318	43318					0.13629763159326558
LASKLKESV	9	Unmodified	_LASKLKESV_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7508239746094	2	487.797675	973.580796	-0.15499	-7.5605E-05	-0.37881	-0.00018478	-0.5338	-0.00026039	487.797061589319	75.747	0.50715	75.488	75.24	75.747	-0.25866					18	12	2	0	0	0	0.023061	1	8997	8997		69.628	0	1	152110			37666	1063	25820	25875	43319	43319					0.09294913620090028
LASLALSWY	9	Unmodified	_LASLALSWY_					0	0	0		ENST00000551251.1_1_12:117273806-117290307:+|nuORF	ENST00000551251.1_1_12:117273806-117290307:+|nuORF	ENST00000551251.1_1_12:117273806-117290307:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.80340576171875	2	512.279118	1022.54368	0.10022	5.1342E-05	-3.7264	-0.001909	-3.6262	-0.0018576	512.2769923276048	52.337	0.80827	52.19	51.95	52.758	-0.14735					30	20	2	0	0	0	0.024354	1	5626	5626		38.806	4.6336	1	263930			37667	16598	25821	25876	43320	43320					0.03331242074318652
LASLHGTK	8	Unmodified	_LASLHGTK_					0	0	0		ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	ENSG00000153002|ENST00000282957|CPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.21435546875	2	413.742702	825.470852	-0.67783	-0.00028045	-0.18781	-7.7705E-05	-0.86564	-0.00035815	413.7432414817423	24.378	0.40315	24.331	24.22	24.623	-0.047148					13	8	2	0	0	0	0.027866	1	1064	1064		26.796	1.3459	1	39400			37668	6312	25822	25877	43321	43321					0.051135330715851524
LASLRLQP	8	Unmodified	_LASLRLQP_					0	0	0			REV__ENST00000588072.5_1_18:11908402-11908690:-|nuORF	REV__ENST00000588072.5_1_18:11908402-11908690:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7591247558594	2	449.279452	896.544351	-0.15158	-6.8102E-05	-0.092277	-4.1458E-05	-0.24386	-0.00010956	449.27934395007117	44.939	0.99422	44.983	44.382	45.377	0.043877					77	28	3	0	0	0	0.027866	1	4206	4206		40.778	6.6056	1	3397300	+		37669	35640	25823	25878	43322	43322					0.09194081514044683
LASMAKTK	8	Unmodified	_LASMAKTK_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.2381591796875	2	425.246763	848.478974	0.13849	5.8892E-05	1.6501	0.00070169	1.7886	0.00076058	425.24623997151656	22.177	0.14549	21.975	21.903	22.048	-0.20199					4	2	2	0	0	0	0.027866	1	725	725		12.207	8.5225	1	5946.7			37670	4392	25824	25879	43323	43323					0.048673439966933074
LASMAKTK	8	Unmodified	_LASMAKTK_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	425.246763	848.478974	0.65008	0.00027644	2.9473	0.0012533	3.5974	0.0015298	425.2484500539814	21.772	0.14594	21.595	21.494	21.64	-0.17721	-0.18986	0.0010634	NaN	12.207	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3646.5			37671	4392	25824	25879							0.048673439966933074
LASPMIAPT	9	Unmodified	_LASPMIAPT_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.23297119140625	2	450.746596	899.478639	0.051859	2.3375E-05	3.9682	0.0017886	4.02	0.001812	450.7483056189296	26.078	0.92138	26.16	25.793	26.714	0.081293					32	21	2	0	0	0	0.021616	1	1213	1213		85.359	19.556	1	391010			37672	9888	25825	25880	43324	43324					0.024879242768292897
LASPMIAPT	9	Unmodified	_LASPMIAPT_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.746596	899.478639	0.063118	2.845E-05	3.9355	0.0017739	3.9986	0.0018023	450.74830792478036	26.416	0.65885	26.416	26.124	26.783	0	-0.023638	-0.00014311	NaN	85.359	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384170			37673	9888	25825	25880							0.024879242768292897
LASPMIAPT	9	Unmodified	_LASPMIAPT_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.746596	899.478639	-0.25698	-0.00011583	4.225	0.0019044	3.968	0.0017886	450.7483822847727	26.427	0.73488	26.404	26.124	26.859	-0.023087	-0.035141	0.00011791	NaN	85.359	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456890			37674	9888	25825	25880							0.024879242768292897
LASPMIAPT	9	Unmodified	_LASPMIAPT_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.746596	899.478639	-0.36239	-0.00016335	4.4217	0.0019931	4.0593	0.0018297	450.7486531933311	26.827	0.49793	26.586	26.373	26.871	-0.24103	0.14693	0.0002952	NaN	85.359	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105150			37675	9888	25825	25880							0.024879242768292897
LASPMIAPT	9	Unmodified	_LASPMIAPT_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.746596	899.478639	-0.65628	-0.00029582	4.6287	0.0020863	3.9724	0.0017905	450.74866203236735	26.733	0.66688	26.57	26.344	27.011	-0.16331	0.13016	0.00048179	NaN	85.359	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221820			37676	9888	25825	25880							0.024879242768292897
LASPPMIIK	9	Unmodified	_LASPPMIIK_					0	0	0			REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF	REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.79217529296875	2	485.293714	968.572874	-1.1483	-0.00055729	3.8584	0.0018725	2.71	0.0013152	485.29587569085965	83.507	0.85512	83.533	83.003	83.858	0.026558					30	19	2	0	0	0	0.023417	1	10381	10381		40.778	0	1	754760	+		37677	20412	25826	25881	43325	43325					0.08733063098964067
LASPPPLL	8	Unmodified	_LASPPPLL_					0	0	0			REV__ENST00000262319.10_1_16:1555547-1556324:+|nuORF	REV__ENST00000262319.10_1_16:1555547-1556324:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.2330017089844	2	404.252372	806.49019	-0.20571	-8.3159E-05	-3.6262	-0.0014659	-3.8319	-0.001549	404.2512089357244	84.427	0.16621	84.355	84.221	84.387	-0.072769					5	3	2	0	0	0	0.027866	1	10527	10527		8.8223	0	1	29975	+		37678	29657	25827	25882	43326	43326					0.0792048936248193
LASPPPLL	8	Unmodified	_LASPPPLL_					0	0	0			REV__ENST00000262319.10_1_16:1555547-1556324:+|nuORF	REV__ENST00000262319.10_1_16:1555547-1556324:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	404.252372	806.49019	1.0479	0.00042362	-5.596	-0.0022622	-4.5481	-0.0018386	404.25008864547533	84.477	0.21189	84.273	84.124	84.336	-0.20329	-0.0406	-0.00076697	NaN	8.8223	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50406	+		37679	29657	25827	25882							0.0792048936248193
LASPQNKP	8	Unmodified	_LASPQNKP_					0	0	0			REV__nc|ENSG00000129116|Q8WX93-5|PALLD	REV__nc|ENSG00000129116|Q8WX93-5|PALLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2868347167969	2	427.74016	853.465767	-0.14138	-6.0473E-05	1.7132	0.00073281	1.5718	0.00067234	427.7399732218571	63.301	0.52787	63.05	62.809	63.336	-0.25141					13	13	2	0	0	0	0.027866	1	7344	7344		45.952	0	1	91364	+		37680	36648	25828	25883	43327	43327					0.03317229208948902
LASPVQRLL	9	Unmodified	_LASPVQRLL_					0	0	0			REV__nc|ENSG00000185651|P68036-3|UBE2L3	REV__nc|ENSG00000185651|P68036-3|UBE2L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7793884277344	2	498.813659	995.612765	-0.40958	-0.0002043	0.48588	0.00024236	0.076305	3.8062E-05	498.8135753097737	32.778	0.48635	32.778	32.531	33.018	0					23	12	2	0	0	0	0.024457	1	2311	2311		37.159	7.3176	1	195110	+		37681	37016	25829	25884	43328	43328					0.11478326093913438
LASQRKTK	8	Unmodified	_LASQRKTK_					0	0	0			REV__ENST00000355072.9_1_4:3124631-3127312:+|nuORF	REV__ENST00000355072.9_1_4:3124631-3127312:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.7614440917969	2	466.287808	930.561064	-0.51841	-0.00024173	4.2924	0.0020015	3.774	0.0017598	466.2895819959816	45.231	0.34646	45.02	44.871	45.217	-0.21109					16	9	2	0	0	0	0.027866	1	4251	4251		16.473	0	1	197660	+		37682	30769	25830	25885	43329	43329					0.09300582399987434
LASRGMIG	8	Unmodified	_LASRGMIG_					0	0	0			REV__nc|ENSG00000139737|Q8ND83-4|SLAIN1	REV__nc|ENSG00000139737|Q8ND83-4|SLAIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.2247314453125	2	402.723455	803.432358	0.84218	0.00033916	-2.8167	-0.0011344	-1.9746	-0.0007952	402.7217424081873	27.258	1.1744	27.258	26.825	27.999	0					76	30	4	0	0	0	0.97924	1	1500	1500		40.573	3.4135	1	2058700	+		37683	23963	25831	25886	43330	43330					0.022779041654075627
LASRNLAPK	9	Unmodified	_LASRNLAPK_					0	0	0		ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF;ENSG00000256061|ENST00000321149|DNAAF4	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2768249511719	2	485.295633	968.576714	0.071513	3.4705E-05	-1.9437	-0.00094327	-1.8722	-0.00090857	485.2950582743	41.828	0.54491	41.828	41.542	42.087	0					32	15	3	0	0	0	0.023007	1	3839	3839		47.657	5.2612	1	409970			37684	10902	25832	25887	43331	43331					0.09116868917044485
LASRNLAPK	9	Unmodified	_LASRNLAPK_					0	0	0		ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF;ENSG00000256061|ENST00000321149|DNAAF4	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.295633	968.576714	-0.35946	-0.00017444	-0.61343	-0.00029769	-0.97289	-0.00047214	485.29520302826455	41.993	0.41418	41.861	41.603	42.017	-0.13219	-0.030912	0.00012902	NaN	47.657	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560220			37685	10902	25832	25887							0.09116868917044485
LASRNLAPK	9	Unmodified	_LASRNLAPK_					0	0	0		ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF;ENSG00000256061|ENST00000321149|DNAAF4	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.295633	968.576714	-0.425	-0.00020625	-0.4562	-0.00022139	-0.8812	-0.00042764	485.2953565625224	41.96	0.44324	41.986	41.709	42.152	0.026012	0.094627	0.00028163	NaN	47.657	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405840			37686	10902	25832	25887							0.09116868917044485
LASSAEQQP	9	Unmodified	_LASSAEQQP_					0	0	0			REV__ENST00000571487.5_1_16:70497084-70500964:+|nuORF	REV__ENST00000571487.5_1_16:70497084-70500964:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2675476074219	2	465.729989	929.445425	0.13521	6.297E-05	-1.6836	-0.00078408	-1.5483	-0.00072111	465.72898117280903	81.594	0.52851	81.618	81.288	81.817	0.023911					28	12	3	0	0	0	0.024292	1	10093	10093		40.778	5.5774	1	211950	+		37687	32976	25833	25888	43332	43332					-0.022119862415138414
LASSAFVSLV	10	Unmodified	_LASSAFVSLV_					0	0	0		ENST00000459741.5_1_21:45509461-45509599:+|nuORF	ENST00000459741.5_1_21:45509461-45509599:+|nuORF	ENST00000459741.5_1_21:45509461-45509599:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2681579589844	2	497.2844	992.554247	-1.0228	-0.00050864	-3.3677	-0.0016747	-4.3905	-0.0021833	497.28297081522027	35.184	0.22308	35.163	35.085	35.308	-0.021763					8	5	2	0	0	0	0.03519	1	2683	2683		58.782	0	1	50136			37688	14634	25834	25889	43333	43333					0.05767224728765541
LASSFHNCN	9	Unmodified	_LASSFHNCN_					0	0	0			REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7179870605469	2	496.716359	991.418164	-0.436	-0.00021657	3.1175	0.0015485	2.6815	0.0013319	496.71801832498005	28.13	1.4206	28.13	27.653	29.073	0					92	34	5	0	0	0	0.62163	1	1603	1603		51.335	0	1	4488400	+		37689	22600	25835	25890	43334	43334					-0.07788793053543941
LASTGANKNE	10	Unmodified	_LASTGANKNE_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.75384521484375	2	502.753995	1003.49344	-1.1157	-0.0005609	0.89358	0.00044925	-0.22208	-0.00011165	502.7542614680418	28.953	0.79529	28.953	28.613	29.408	0					57	19	6	0	0	0	0.40067	1	1737	1737		98.629	5.4339	1	1147800	+		37690	28400	25836	25891	43335	43335					-0.00816912321477048
LASTGANKNE	10	Unmodified	_LASTGANKNE_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	502.753995	1003.49344	-1.1157	-0.0005609	0.89358	0.00044925	-0.22208	-0.00011165	502.7542614680418	28.953	0.79529	28.953	28.613	29.408	0	0.12414	0.00084087	NaN	98.629	57	19	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147800	+		37691	28400	25836	25891							-0.00816912321477048
LASTGANKNE	10	Unmodified	_LASTGANKNE_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.753995	1003.49344	-0.63492	-0.00031921	0.33308	0.00016746	-0.30184	-0.00015175	502.75403208849934	28.932	0.64551	28.935	28.631	29.276	0.0031357	0.10575	0.00027728	NaN	98.629	49	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1222900	+		37692	28400	25836	25891							-0.00816912321477048
LASTHHSLKP	10	Unmodified	_LASTHHSLKP_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3201293945312	2	545.803823	1089.59309	-0.43306	-0.00023636	1.567	0.00085529	1.134	0.00061893	545.8041686455049	72.558	0.40687	72.558	72.333	72.74	0					15	9	2	0	0	0	0.03519	1	8848	8848		79.713	0	1	173170	+		37693	28266	25837	25892	43336	43336					0.05187950083131909
LASVASARLSA	11	Unmodified	_LASVASARLSA_					0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.82076	1	10399	10399		56.434	5.2411	1	3714800			37694	37919	25838	25893	43337	43337					0.07224530363305348
LASVEPEP	8	Unmodified	_LASVEPEP_					0	0	0		ENST00000463837.5_1_11:64108435-64108636:+|nuORF	ENST00000463837.5_1_11:64108435-64108636:+|nuORF	ENST00000463837.5_1_11:64108435-64108636:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2459411621094	2	421.218726	840.422899	-0.23985	-0.00010103	-2.259	-0.00095153	-2.4988	-0.0010526	421.2176125905675	19.888	0.67002	19.774	19.548	20.218	-0.11403					23	13	3	0	0	0	0.027866	1	502	502		28.254	7.7724	1	111050			37695	14744	25839	25894	43338	43338					-0.003695856391345842
LASVKHEL	8	Unmodified	_LASVKHEL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.765625	2	448.763635	895.512717	0.3006	0.0001349	4.431	0.0019885	4.7316	0.0021234	448.7654382617502	74.959	1.0745	74.7	74.285	75.36	-0.25887					59	26	3	0	0	0	0.47665	1	9139	9139		87.754	2.3948	1	913560	+		37696	20735	25840	25895	43339	43339					0.06078088760091305
LASVKHEL	8	Unmodified	_LASVKHEL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.763635	895.512717	0.92565	0.0004154	4.0616	0.0018227	4.9873	0.0022381	448.7651979269402	74.684	1.0502	74.684	74.256	75.307	0	0.0034056	-0.00047516	NaN	87.754	75	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864100	+		37697	20735	25840	25895							0.06078088760091305
LASVKHEL	8	Unmodified	_LASVKHEL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	448.763635	895.512717	0.3006	0.0001349	4.431	0.0019885	4.7316	0.0021234	448.7654382617502	74.959	1.0745	74.7	74.285	75.36	-0.25887	0.019802	-0.00014366	NaN	87.754	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	913560	+		37698	20735	25840	25895							0.06078088760091305
LASVKHEL	8	Unmodified	_LASVKHEL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	448.763635	895.512717	-0.24824	-0.0001114	5.3731	0.0024112	5.1248	0.0022998	448.76562663418923	74.702	1.2612	74.712	74.313	75.574	0.010376	0.031818	0.0007019	NaN	87.754	87	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	800340	+		37699	20735	25840	25895							0.06078088760091305
LASVKHEL	8	Unmodified	_LASVKHEL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	448.763635	895.512717	0.31991	0.00014356	4.5545	0.0020439	4.8745	0.0021875	448.76542228210326	74.922	0.95103	74.646	74.352	75.303	-0.27573	-0.034632	-3.2767E-05	NaN	87.754	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289500	+		37700	20735	25840	25895							0.06078088760091305
LASVKHEL	8	Unmodified	_LASVKHEL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	448.763635	895.512717	-0.045546	-2.044E-05	5.1733	0.0023216	5.1278	0.0023011	448.76566100099575	74.928	0.99653	74.665	74.318	75.314	-0.26326	-0.01568	0.00052259	NaN	87.754	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332790	+		37701	20735	25840	25895							0.06078088760091305
LASVKHEL	8	Unmodified	_LASVKHEL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	448.763635	895.512717	0.42207	0.00018941	4.8609	0.0021814	5.2829	0.0023708	448.76534222039317	74.859	0.87955	74.676	74.267	75.146	-0.18278	-0.0047137	0.00024217	NaN	87.754	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236650	+		37702	20735	25840	25895							0.06078088760091305
LASVLLYS	8	Unmodified	_LASVLLYS_					0	0	0		ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENSG00000068120|ENST00000393818|COASY	ENSG00000068120|ENST00000393818|COASY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.2549743652344	2	433.255111	864.49567	0.5502	0.00023838	-0.69107	-0.00029941	-0.14087	-6.1032E-05	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	0.95417	1	13085	13085		44.531	2.0566	1	237570000			37703	1377	25841	25896	43340	43340					0.05800168154280527
LASVLLYS	8	Unmodified	_LASVLLYS_					0	0	0		ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENSG00000068120|ENST00000393818|COASY	ENSG00000068120|ENST00000393818|COASY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.2557678222656	2	433.255111	864.49567	0.068768	2.9794E-05	-0.16359	-7.0878E-05	-0.094827	-4.1084E-05	433.25539260258705	102.94	2.6221	102.81	102.45	105.08	-0.12783					130	72	2	0	0	0	0.94001	1	12821	12821		46.766	0	1	236480000			37704	1377	25841	25896	43341	43341					0.05800168154280527
LASVLVRL	8	Unmodified	_LASVLVRL_					0	0	0			REV__ENST00000249373.7_1_7:128852402-128852711:+|nuORF	REV__ENST00000249373.7_1_7:128852402-128852711:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.7559509277344	2	435.792195	869.569838	2.0873	0.00090963	-2.5073	-0.0010927	-0.41998	-0.00018303	435.79059215802766	63.678	0.46439	63.732	63.555	64.019	0.054104					15	12	2	0	0	0	0.027866	1	7381	7381		53.351	7.3995	1	96005	+		37705	29489	25842	25897	43342	43342					0.12983556036476784
LASVRPEAP	9	Unmodified	_LASVRPEAP_					0	0	0		ENST00000503582.1_1_5:141703577-141703763:-|nuORF	ENST00000503582.1_1_5:141703577-141703763:-|nuORF	ENST00000503582.1_1_5:141703577-141703763:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2664794921875	2	470.266542	938.51853	1.0748	0.00050545	-1.5138	-0.0007119	-0.43901	-0.00020645	470.26566782267884	33.235	0.73664	33.292	32.995	33.732	0.056572					55	19	4	0	0	0	0.096521	1	2336	2336		111.65	6.9017	1	1474800			37706	15691	25843	25898	43343	43343					0.0468118727176261
LASWAVHVR	9	Unmodified	_LASWAVHVR_					0	0	0		ENST00000560371.5_1_14:103373770-103374100:+|nuORF	ENST00000560371.5_1_14:103373770-103374100:+|nuORF	ENST00000560371.5_1_14:103373770-103374100:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7504272460938	2	519.795801	1037.57705	-0.38021	-0.00019763	-1.2803	-0.00066551	-1.6605	-0.00086314	519.7941305196657	23.86	0.35676	23.936	23.734	24.091	0.076241					13	7	3	0	0	0	0.024436	1	926	926		38.806	18.809	1	21926			37707	16798	25844	25899	43344	43344					0.05976288636884419
LASWAVHVR	9	Unmodified	_LASWAVHVR_					0	0	0		ENST00000560371.5_1_14:103373770-103374100:+|nuORF	ENST00000560371.5_1_14:103373770-103374100:+|nuORF	ENST00000560371.5_1_14:103373770-103374100:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.795801	1037.57705	-0.88454	-0.00045978	-2.105	-0.0010942	-2.9895	-0.001554	519.7935827687974	23.981	0.34459	23.981	23.822	24.166	0	0.02244	-0.00045752	NaN	38.806	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18673			37708	16798	25844	25899							0.05976288636884419
LASWIIFTV	9	Unmodified	_LASWIIFTV_					0	0	0		ENSG00000137634|ENST00000375478|NXPE4	ENSG00000137634|ENST00000375478|NXPE4	ENSG00000137634|ENST00000375478|NXPE4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3056030273438	2	525.305136	1048.59572	-1.2086	-0.00063489	-2.9556	-0.0015526	-4.1642	-0.0021875	525.3034140445097	65.616	0.86275	65.403	65.052	65.915	-0.21327					50	20	4	0	0	0	0.43973	1	7520	7520		63.306	8.53	1	2169400			37709	5141	25845	25900	43345	43345					0.07336405488103992
LASWTQNL	8	Unmodified	_LASWTQNL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7379150390625	2	466.745442	931.476331	-0.36687	-0.00017124	2.3759	0.001109	2.0091	0.00093772	466.7472267752475	45.467	0.9485	45.319	44.974	45.922	-0.1488					34	27	2	0	0	0	0.027866	1	4353	4353		111.65	34.802	1	240260			37710	1175	25846	25901	43346	43346					0.007852118633650207
LATAAVVALA	10	Unmodified	_LATAAVVALA_					0	0	0			REV__KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	REV__KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.26873779296875	2	450.28166	898.548768	-0.83713	-0.00037695	-3.093	-0.0013927	-3.9301	-0.0017697	450.2798607093317	37.983	0.37289	37.901	37.743	38.116	-0.082516					19	10	3	0	0	0	0.03519	1	3145	3145		73.975	13.003	1	1583500	+		37711	23117	25847	25902	43347	43347					0.09543545936946884
LATCLLAII	9	Carbamidomethyl (C)	_LATC(Carbamidomethyl (C))LLAII_	LATC(1)LLAII		LATC(92)LLAII		0	1	0		ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.29693603515625	2	494.298996	986.583439	0.11882	5.8733E-05	-4.1508	-0.0020517	-4.032	-0.001993	494.29673920981026	101.63	1.0995	101.63	101.16	102.26	0					36	24	2	0	0	0	0.18276	1	13016	13016		92.191	18.216	1	599670			37712	9899	25848	25903	43348	43348	134				0.08961045753380859
LATCLLAII	9	Carbamidomethyl (C)	_LATC(Carbamidomethyl (C))LLAII_	LATC(1)LLAII		LATC(80)LLAII		0	1	0		ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.29705810546875	2	494.298996	986.583439	-0.08585	-4.2436E-05	-3.8874	-0.0019215	-3.9732	-0.001964	494.2967758711202	101.6	1.1581	101.61	101.17	102.33	0.0090332					47	26	3	0	0	0	0.26797	1	12975	12975		79.939	8.5613	1	625790			37713	9899	25848	25903	43349	43349	134				0.08961045753380859
LATCLLAII	9	Carbamidomethyl (C)	_LATC(Carbamidomethyl (C))LLAII_	LATC(1)LLAII		LATC(110)LLAII		0	1	0		ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2972106933594	2	494.298996	986.583439	0.24022	0.00011874	-4.3481	-0.0021493	-4.1079	-0.0020305	494.2965824942627	101.68	1.2666	101.68	101.15	102.41	-0.0054474					51	28	4	0	0	0	0.10076	1	12947	12947		110.34	17.142	1	651130			37714	9899	25848	25903	43350	43350	134				0.08961045753380859
LATDGQIVA	9	Unmodified	_LATDGQIVA_					0	0	0			REV__ENST00000469963.5_1_6:31696345-31696947:-|nuORF	REV__ENST00000469963.5_1_6:31696345-31696947:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.2452087402344	2	444.245275	886.475997	0.24163	0.00010734	-0.061634	-2.738E-05	0.17999	7.9961E-05	444.24543220448146	102.93	1.3256	102.81	102.15	103.48	-0.12724					79	31	4	0	0	0	0.85329	1	12814	12814		35.618	1.4457	1	6673700	+		37715	28749	25849	25904	43351	43351					0.028217921435157223
LATDYPPVS	9	Unmodified	_LATDYPPVS_					0	0	0			REV__ENSG00000129910|ENST00000289746|CDH15	REV__ENSG00000129910|ENST00000289746|CDH15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75018310546875	2	481.745108	961.475663	-0.94017	-0.00045292	2.2582	0.0010879	1.318	0.00063496	481.74527102622557	30.43	0.87212	30.504	29.92	30.792	0.074314					28	20	2	0	0	0	0.024262	1	1841	1841		38.806	0	1	104280	+		37716	23065	25850	25905	43352	43352					-0.006616275763235535
LATEASLVVL	10	Unmodified	_LATEASLVVL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.29248046875	2	508.305332	1014.59611	-0.33787	-0.00017174	2.5987	0.001321	2.2609	0.0011492	508.306940359153	50.544	0.16802	50.625	50.576	50.744	0.08099					6	4	2	0	0	0	0.03519	1	5236	5236		29.15	15.374	1	137290			37717	4388	25851	25906	43353	43353					0.08939780417290422
LATEEVVAL	9	Unmodified	_LATEEVVAL_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.76885986328125	2	472.768583	943.522613	0.71085	0.00033607	0.51544	0.00024369	1.2263	0.00057975	472.7683951406541	75.966	0.92979	75.977	75.681	76.611	0.011642					35	23	3	0	0	0	0.20304	1	9272	9272		88.643	0	1	1043400	+		37718	27806	25852	25907	43354	43354					0.04859231974796785
LATEEVVAL	9	Unmodified	_LATEEVVAL_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	472.768583	943.522613	0.03294	1.5573E-05	1.1137	0.00052653	1.1467	0.00054211	472.7687053048227	76.179	1.0169	75.951	75.633	76.65	-0.22843	-0.006255	0.00026234	NaN	88.643	41	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1095300	+		37719	27806	25852	25907							0.04859231974796785
LATEEVVAL	9	Unmodified	_LATEEVVAL_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	472.768583	943.522613	0.71085	0.00033607	0.51544	0.00024369	1.2263	0.00057975	472.7683951406541	75.966	0.92979	75.977	75.681	76.611	0.011642	0.020072	-0.00030335	NaN	88.643	35	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1043400	+		37720	27806	25852	25907							0.04859231974796785
LATHRNHL	8	Unmodified	_LATHRNHL_					0	0	0		ENST00000527245.5_1_11:124746819-124746948:+|nuORF	ENST00000527245.5_1_11:124746819-124746948:+|nuORF	ENST00000527245.5_1_11:124746819-124746948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7500915527344	2	481.26995	960.525347	-0.82359	-0.00039637	3.0369	0.0014616	2.2133	0.0010652	481.27163797601395	30.427	0.24914	30.427	30.343	30.592	0					8	5	2	0	0	0	0.027866	1	1955	1955		55.504	11.387	1	23791			37721	16144	25853	25908	43355	43355					0.043505449429858345
LATITSFV	8	Unmodified	_LATITSFV_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;LY75|p.Y933Ifs*2|1|0.33|ENSG00000054219|chr2:159852287-159852288|-/T|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.246337890625	2	426.247286	850.48002	0.80944	0.00034502	-3.6413	-0.0015521	-2.8319	-0.0012071	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	1.0574	1	10619	10619		26.796	1.3459	1	12732000			37722	1169	25854	25909	43356	43356					0.04879881637236849
LATKNLSL	8	Unmodified	_LATKNLSL_					0	0	0		ENSG00000169299|ENST00000381967|PGM2	ENSG00000169299|ENST00000381967|PGM2	ENSG00000169299|ENST00000381967|PGM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.26605224609375	2	430.26601	858.517468	-1.1459	-0.00049303	1.0484	0.00045109	-0.097462	-4.1934E-05	430.2663551462506	20.539	1.1179	20.539	20.274	21.392	0					53	22	4	0	0	0	0.44658	1	558	558		90.777	3.0224	1	1154700			37723	7925	25855	25910	43357	43357					0.08254972902852842
LATLKASYV	9	Unmodified	_LATLKASYV_					0	0	0			REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.27410888671875	2	483.286943	964.559333	-0.55214	-0.00026684	0.82686	0.00039961	0.27472	0.00013277	483.2877132930152	30.342	0.16739	30.351	30.247	30.414	0.0086708					7	3	3	0	0	0	0.024263	1	1921	1921		42.396	10.441	1	129360	+		37724	30866	25856	25911	43358	43358					0.07563528591379054
LATLYTTV	8	Unmodified	_LATLYTTV_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.7657165527344	2	441.252569	880.490584	-0.55807	-0.00024625	-3.8668	-0.0017063	-4.4249	-0.0019525	441.25078822274605	38.089	0.50171	37.87	37.424	37.926	-0.21849					17	13	2	0	0	0	0.027866	1	3024	3024		33.516	0	1	100320	+		37725	27980	25857	25912	43359	43359					0.045558642916603276
LATNEAQL	8	Unmodified	_LATNEAQL_					0	0	0			REV__ENSG00000068400|ENST00000376423|GRIPAP1	REV__ENSG00000068400|ENST00000376423|GRIPAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.23016357421875	2	430.229625	858.444697	-0.43166	-0.00018571	2.239	0.00096326	1.8073	0.00077755	430.2305479846648	26.147	0.79497	26.147	25.652	26.447	0					50	18	4	0	0	0	0.50717	1	1310	1310		84.916	10.66	1	1566500	+		37726	20378	25858	25913	43360	43360					0.009812191094169975
LATPALVY	8	Unmodified	_LATPALVY_					0	0	0		nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2507629394531	2	424.249829	846.485105	-0.78296	-0.00033217	2.1396	0.00090772	1.3566	0.00057554	424.25068578129424	102.81	3.5004	102.81	100.1	103.6	0					120	81	3	0	0	0	1.0362	3	13178	13156;13178;13190		31.579	1.7373	1	6301600			37727	18807	25859	25914	43361;43362;43363	43362					0.055721854998637355
LATPALVY	8	Unmodified	_LATPALVY_					0	0	0		nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.2507019042969	2	424.249829	846.485105	-0.17093	-7.2515E-05	1.419	0.00060202	1.2481	0.0005295	424.25040312953325	102.79	2.6572	102.79	100.74	103.4	0.0054169					101	62	3	0	0	0	0.98906	2	13125	13125;13137		39.021	1.993	1	5970700			37728	18807	25859	25914	43364;43365	43364					0.055721854998637355
LATPALVY	8	Unmodified	_LATPALVY_					0	0	0		nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.250244140625	2	424.249829	846.485105	0.45724	0.00019398	0.95023	0.00040313	1.4075	0.00059712	424.2501970516105	102.85	2.0987	102.85	102.33	104.43	-0.0046005					96	50	3	0	0	0	0.97521	3	13098	13098;13123;13135		41.208	2.1869	1	7378400			37729	18807	25859	25914	43366;43367;43368	43366					0.055721854998637355
LATPALVY	8	Unmodified	_LATPALVY_					0	0	0		nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.2502746582031	2	424.249829	846.485105	0.53193	0.00022567	0.77058	0.00032692	1.3025	0.00055259	424.25021290018225	102.93	1.3282	102.8	102.23	103.56	-0.12724					83	31	4	0	0	0	1.0362	2	12802	12802;12815		31.579	1.7373	1	6328600			37730	18807	25859	25914	43369;43370	43369					0.055721854998637355
LATPALVY	8	Unmodified	_LATPALVY_					0	0	0		nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2503662109375	2	424.249829	846.485105	0.10346	4.3893E-05	1.2046	0.00051106	1.3081	0.00055496	424.2503450708961	102.9	3.7499	102.78	100.52	104.27	-0.12783					151	97	3	0	0	0	1.0362	2	12793	12793;12828		31.579	1.7373	1	8549900			37731	18807	25859	25914	43371;43372	43371					0.055721854998637355
LATPALVY	8	Unmodified	_LATPALVY_					0	0	0		nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	nc|ENSG00000284491|A0A1W2PP97|THSD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2503967285156	2	424.249829	846.485105	0.59353	0.00025181	0.7089	0.00030075	1.3024	0.00055256	424.2501351892279	103.04	3.3951	102.87	100.71	104.11	-0.17034					139	82	3	0	0	0	1.0362	2	12815	12815;12827		31.579	1.7373	1	9216600			37732	18807	25859	25914	43373;43374	43373					0.055721854998637355
LATPFLMFV	9	Unmodified	_LATPFLMFV_					0	0	0			REV__ENST00000569462.5_1_15:75075012-75090608:+|nuORF	REV__ENST00000569462.5_1_15:75075012-75090608:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.79052734375	2	519.788264	1037.56198	0.079118	4.1125E-05	2.485	0.0012917	2.5641	0.0013328	519.7894188339121	80.215	0.70639	79.978	79.662	80.369	-0.23784					55	16	4	0	0	0	0.75282	1	9614	9614		42.474	4.6629	1	2617300	+		37733	35370	25860	25915	43375	43375					0.044696607246578424
LATPIHKT	8	Unmodified	_LATPIHKT_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	440.7660827636719	2	440.766178	879.517802	-0.11729	-5.1696E-05	-0.033949	-1.4964E-05	-0.15124	-6.666E-05	440.7662157400356	37.287	1.8907	37.094	36.774	38.664	-0.193					133	51	5	0	0	0	0.42327	1	2992	2992		94.006	0	1	40815000	+		37734	21812	25861	25916	43376	43376					0.07322392622711504
LATPKDADP	9	Unmodified	_LATPKDADP_					0	0	0			REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2430114746094	2	464.242732	926.470912	0.22904	0.00010633	-0.1808	-8.3933E-05	0.048245	2.2398E-05	464.2425588051877	68.323	0.92888	68.03	67.705	68.634	-0.29267					60	23	4	0	0	0	0.20967	1	8162	8162		87.754	5.5138	1	3294600	+		37735	33422	25862	25917	43377	43377					0.004734882808861585
LATPLLLPQ	9	Unmodified	_LATPLLLPQ_					0	0	0		ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.30804443359375	2	483.305136	964.595718	-0.3233	-0.00015625	0.55084	0.00026623	0.22754	0.00010997	483.305275949229	81.507	0.97478	81.507	81.138	82.113	0					54	23	4	0	0	0	0.40179	1	10150	10150		65.803	12.452	1	1187600			37736	17382	25863	25918	43378	43378					0.11200405488091292
LATPLLLPQ	9	Unmodified	_LATPLLLPQ_					0	0	0		ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.30767822265625	2	483.305136	964.595718	-0.4554	-0.0002201	0.58866	0.0002845	0.13326	6.4405E-05	483.30530744670443	81.653	0.80601	81.522	81.217	82.023	-0.13075					45	19	3	0	0	0	0.55828	1	10134	10134		55.504	2.1528	1	1473600			37737	17382	25863	25918	43379	43379					0.11200405488091292
LATPLLLPQ	9	Unmodified	_LATPLLLPQ_					0	0	0		ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	483.305136	964.595718	-0.82529	-0.00039887	1.0071	0.00048673	0.18178	8.7857E-05	483.30551226965287	81.541	0.73053	81.565	81.207	81.938	0.023903	0.11947	0.00047297	NaN	65.803	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1173600			37738	17382	25863	25918							0.11200405488091292
LATPLLLPQ	9	Unmodified	_LATPLLLPQ_					0	0	0		ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.305136	964.595718	0.53232	0.00025727	-0.30508	-0.00014745	0.22724	0.00010983	483.304881116153	81.575	0.5006	81.346	81.064	81.564	-0.2289	-0.10022	-0.00079537	NaN	65.803	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148840			37739	17382	25863	25918							0.11200405488091292
LATPLLLPQ	9	Unmodified	_LATPLLLPQ_					0	0	0		ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.305136	964.595718	0.1644	7.9455E-05	-0.11776	-5.6916E-05	0.046636	2.2539E-05	483.3050513379263	81.549	0.54459	81.356	81.09	81.634	-0.19334	-0.09001	-0.00061431	NaN	65.803	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168200			37740	17382	25863	25918							0.11200405488091292
LATPLLLPQ	9	Unmodified	_LATPLLLPQ_					0	0	0		ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.305136	964.595718	-0.2795	-0.00013508	0.26375	0.00012747	-0.015746	-7.6101E-06	483.3051299421528	81.522	0.54739	81.379	81.151	81.698	-0.14249	-0.066823	-0.00024553	NaN	65.803	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158020			37741	17382	25863	25918							0.11200405488091292
LATRNLGGL	9	Unmodified	_LATRNLGGL_					0	0	0		ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2396545410156	2	457.774534	913.534515	0.068624	3.1414E-05	-1.3595	-0.00062233	-1.2908	-0.00059092	457.7736763918911	34.176	0.43388	34.176	33.816	34.25	0					14	10	2	0	0	0	0.024497	1	2479	2479		13.775	0	1	57321			37742	14305	25864	25919	43380	43380					0.07428893508676992
LATRNLGGL	9	Unmodified	_LATRNLGGL_					0	0	0		ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.774534	913.534515	0.058431	2.6748E-05	-1.7105	-0.00078304	-1.6521	-0.00075629	457.77368303828354	34.012	0.32288	34.008	33.829	34.152	-0.0045624	-0.11741	-0.0011621	NaN	13.775	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61163			37743	14305	25864	25919							0.07428893508676992
LATRNLGGL	9	Unmodified	_LATRNLGGL_					0	0	0		ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.774534	913.534515	-0.16527	-7.5656E-05	-0.50244	-0.00023001	-0.66771	-0.00030566	457.77391238829904	34.074	0.48761	34.125	33.726	34.213	0.050255	-0.00045926	-5.6055E-05	NaN	13.775	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40147			37744	14305	25864	25919							0.07428893508676992
LATRNLGGL	9	Unmodified	_LATRNLGGL_					0	0	0		ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.774534	913.534515	-0.23353	-0.0001069	0.31023	0.00014201	0.076701	3.5112E-05	457.77476396586525	34.346	0.31575	34.139	33.968	34.284	-0.20696	0.01394	0.00068798	NaN	13.775	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110780			37745	14305	25864	25919							0.07428893508676992
LATRNLGGL	9	Unmodified	_LATRNLGGL_					0	0	0		ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.774534	913.534515	-0.72466	-0.00033173	0.68303	0.00031267	-0.041632	-1.9058E-05	457.7747792640461	34.353	0.43961	34.178	33.934	34.374	-0.17557	0.052672	0.0010293	NaN	13.775	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170680			37746	14305	25864	25919							0.07428893508676992
LATSSLPLSP	10	Unmodified	_LATSSLPLSP_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2808837890625	2	493.281857	984.549162	-0.38265	-0.00018876	-2.1765	-0.0010736	-2.5591	-0.0012624	493.28052942583605	21.518	0.91417	21.428	21.01	21.924	-0.090092					40	18	3	0	0	0	0.82838	1	665	665		58.782	5.4305	1	396910			37747	18471	25865	25920	43381	43381					0.056269208661547054
LATSSLPLSP	10	Unmodified	_LATSSLPLSP_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.281857	984.549162	-0.515	-0.00025404	-1.9747	-0.00097409	-2.4897	-0.0012281	493.2805970532934	21.466	0.96685	21.466	20.998	21.965	0	-0.14876	0.00081929	NaN	58.782	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325490			37748	18471	25865	25920							0.056269208661547054
LATSSLPLSP	10	Unmodified	_LATSSLPLSP_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	493.281857	984.549162	-0.34104	-0.00016823	-2.5774	-0.0012714	-2.9185	-0.0014396	493.2805178341969	21.368	1.0191	21.439	20.91	21.929	0.071487	-0.17601	0.00022467	NaN	58.782	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354780			37749	18471	25865	25920							0.056269208661547054
LATSSLPLSP	10	Unmodified	_LATSSLPLSP_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.281857	984.549162	0.010492	5.1754E-06	-5.4715	-0.002699	-5.461	-0.0026938	493.27856387734926	21.873	0.71478	21.696	21.256	21.971	-0.17721	0.080768	-0.0026305	NaN	58.782	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92918			37750	18471	25865	25920							0.056269208661547054
LATSSLPLSP	10	Unmodified	_LATSSLPLSP_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.281857	984.549162	-0.27885	-0.00013755	-6.381	-0.0031476	-6.6599	-0.0032852	493.2786164184017	22.067	0.66957	21.877	21.42	22.089	-0.19072	0.26166	-0.0035278	NaN	58.782	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72752			37751	18471	25865	25920							0.056269208661547054
LATSSLPLSP	10	Unmodified	_LATSSLPLSP_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.281857	984.549162	-0.41736	-0.00020588	-5.2633	-0.0025963	-5.6807	-0.0028022	493.2787493277008	21.986	0.57902	21.784	21.469	22.048	-0.20199	0.16946	-0.0024251	NaN	58.782	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107190			37752	18471	25865	25920							0.056269208661547054
LATTILQHW	9	Unmodified	_LATTILQHW_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7532348632812	2	541.803291	1081.59203	-0.53988	-0.00029251	-0.070401	-3.8144E-05	-0.61029	-0.00033065	541.8033270554873	66.051	0.8094	65.809	65.414	66.224	-0.24145					41	19	3	0	0	0	0.023837	1	7591	7591		64.207	23.429	1	3879400			37753	10867	25866	25921	43382	43382					0.054497357142281544
LATTILQHW	9	Unmodified	_LATTILQHW_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.803291	1081.59203	-0.99661	-0.00053997	0.46074	0.00024963	-0.53587	-0.00029034	541.8035823020518	66.027	0.7722	65.813	65.421	66.194	-0.21327	-0.0011037	8.9846E-05	NaN	45.972	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3851000			37754	10867	25866	25921							0.054497357142281544
LATTILQHW	9	Unmodified	_LATTILQHW_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.803291	1081.59203	-1.2219	-0.00066201	0.71724	0.0003886	-0.50463	-0.00027341	541.8036875400338	66.072	0.68757	65.821	65.395	66.082	-0.25112	0.006218	0.00036779	NaN	45.972	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3988100			37755	10867	25866	25921							0.054497357142281544
LATTKGPE	8	Unmodified	_LATTKGPE_					0	0	0			REV__nc|ENSG00000171462|Q6UY11-2|DLK2	REV__nc|ENSG00000171462|Q6UY11-2|DLK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5099792480469	2	408.726718	815.438883	0.053427	2.1837E-05	1.5478	0.00063265	1.6013	0.00065448	408.72727688878007	27.934	1.0012	27.93	27.581	28.582	-0.0042019					40	24	3	0	0	0	0.027866	1	1633	1633		37.159	0	1	178920	+		37756	19457	25867	25922	43383	43383					0.023781205977684294
LATVARPE	8	Unmodified	_LATVARPE_					0	0	0		sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.22540283203125	2	428.747985	855.481417	0.53588	0.00022976	0.93565	0.00040116	1.4715	0.00063092	428.7482024295682	25.192	0.95914	25.272	25.006	25.966	0.08009					44	22	3	0	0	0	0.027866	1	1165	1165		26.693	10.22	1	1143000			37757	37945	25868	25923	43384	43384					0.047895157259858934
LATVARPE	8	Unmodified	_LATVARPE_					0	0	0		sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	sp|P0CK53|CEP2_EBVB9Cytoplasmicenvelopmentprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF2PE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	428.747985	855.481417	0.1248	5.3508E-05	-0.20013	-8.5804E-05	-0.075327	-3.2296E-05	428.74768678399994	25.405	0.29017	25.234	25.039	25.33	-0.17078	-0.0926	-0.0018972	NaN	26.693	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68052			37758	37945	25868	25923							0.047895157259858934
LATVQGRS	8	Unmodified	_LATVQGRS_					0	0	0			REV__nc|ENSG00000107949|Q9P287-2|BCCIP	REV__nc|ENSG00000107949|Q9P287-2|BCCIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.2384033203125	2	416.237784	830.461016	2.0395	0.00084891	-0.0048	-1.9979E-06	2.0347	0.00084691	416.237657627207	19.773	1.6125	19.839	19.587	21.2	0.066195					66	32	3	0	0	0	1.043	1	421	421		30.504	0	1	419820	+		37759	36554	25869	25924	43385	43385					0.03900345066188038
LATVRRPR	8	Unmodified	_LATVRRPR_					0	0	0			REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.77911376953125	2	484.809242	967.603932	-0.56468	-0.00027376	-2.5252	-0.0012242	-3.0898	-0.001498	484.80699106830224	38.606	0.58503	38.519	38.409	38.994	-0.087627					20	15	2	0	0	0	0.027866	1	3279	3279		26.796	0	1	119310	+		37760	37575	25870	25925	43386	43386					0.11883397248084293
LATVRRPR	8	Unmodified	_LATVRRPR_					0	0	0			REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.809242	967.603932	-0.79292	-0.00038441	-11.261	-0.0054593	-12.054	-0.0058437	484.8037818365105	38.412	0.55342	38.232	37.908	38.461	-0.17929	-0.10794	-0.00044961	NaN	35.201	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232030	+		37761	37575	25870	25925							0.11883397248084293
LATVRRPR	8	Unmodified	_LATVRRPR_					0	0	0			REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.809242	967.603932	-0.76244	-0.00036964	-10.751	-0.0052123	-11.514	-0.0055819	484.8039483389835	38.435	0.42698	38.213	37.99	38.417	-0.22149	-0.12721	4.4352E-05	NaN	35.201	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199160	+		37762	37575	25870	25925							0.11883397248084293
LATVRRPR	8	Unmodified	_LATVRRPR_					0	0	0			REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	REV__SPESP1|p.S340P|1|0.21|ENSG00000258484|chr15:68946552-68946552|T/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.809242	967.603932	-0.14913	-7.2299E-05	-11.994	-0.0058146	-12.143	-0.0058869	484.8035600746819	38.432	0.50232	38.213	37.988	38.491	-0.21848	-0.12688	-0.0011603	NaN	35.201	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223890	+		37763	37575	25870	25925							0.11883397248084293
LATVSPHF	8	Unmodified	_LATVSPHF_					0	0	0		ENST00000380752.9_1_13:30088160-30088406:-|nuORF	ENST00000380752.9_1_13:30088160-30088406:-|nuORF	ENST00000380752.9_1_13:30088160-30088406:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.74530029296875	2	436.237253	870.459953	-0.070192	-3.062E-05	-4.0327	-0.0017592	-4.1029	-0.0017898	436.2356227469262	35.271	0.51238	35.315	35.229	35.741	0.04406					33	12	4	0	0	0	0.027866	1	2669	2669		62.978	0	1	158910			37764	13319	25871	25926	43387	43387					0.019541306972769235
LATVYTPPPR	10	Unmodified	_LATVYTPPPR_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2295532226562	2	557.816399	1113.61824	-0.9872	-0.00055067	-1.1592	-0.0006466	-2.1464	-0.0011973	557.8158088555166	43.359	0.5757	43.133	42.873	43.449	-0.22597					22	15	2	0	0	0	0.03519	1	3959	3959		64.207	0	1	831150			37765	18420	25872	25927	43388	43388					0.06598004885677256
LATVYYSL	8	Unmodified	_LATVYYSL_					0	0	0		ENST00000510350.1_1_5:148334415-148386623:-|nuORF;nc|ENSG00000169247|Q8TF17-3|SH3TC2;nc|ENSG00000169247|Q8TF17-2|SH3TC2;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	ENST00000510350.1_1_5:148334415-148386623:-|nuORF	ENST00000510350.1_1_5:148334415-148386623:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2685852050781	2	465.252569	928.490584	0.31419	0.00014618	1.1003	0.00051193	1.4145	0.00065811	465.25252181701137	66.017	0.27057	66.017	65.913	66.184	0					9	6	2	0	0	0	0.027866	1	7842	7842		44.531	0	1	73861			37766	7917	25873	25928	43389	43389					0.02347864291652968
LAVAEEHKKG	10	Unmodified	_LAVAEEHKKG_					0	0	0		ENST00000532630.1_1_11:47270505-47289511:+|nuORF	ENST00000532630.1_1_11:47270505-47289511:+|nuORF	ENST00000532630.1_1_11:47270505-47289511:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.3010864257812	2	541.303655	1080.59276	-0.703	-0.00038054	-2.5372	-0.0013734	-3.2402	-0.001754	541.3020564049771	65.388	0.66035	65.147	64.923	65.583	-0.24145					22	15	2	0	0	0	0.03519	1	7433	7433		35.618	0	1	203890			37767	16295	25874	25929	43390	43390					0.05568530363279933
LAVAFVHAL	9	Unmodified	_LAVAFVHAL_					0	0	0		CON__ENSEMBL:ENSBTAP00000018229;CON__Q3MHN5	CON__ENSEMBL:ENSBTAP00000018229	CON__ENSEMBL:ENSBTAP00000018229	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.29241943359375	2	470.78437	939.554188	-0.051174	-2.4092E-05	-3.8638	-0.001819	-3.915	-0.0018431	470.78230854477977	53.125	0.66479	52.978	52.645	53.31	-0.14724					33	17	3	0	0	0	0.024289	1	5663	5663		39.021	0	1	1921300		+	37768	485	25875	25930	43391	43391					0.081992695194117
LAVAKKAE	8	Unmodified	_LAVAKKAE_					0	0	0		ENST00000566638.1_1_16:67283046-67298355:+|nuORF;ENST00000564704.5_1_16:67272241-67289541:+|nuORF;ENSG00000135740|ENST00000299798|SLC9A5	ENST00000566638.1_1_16:67283046-67298355:+|nuORF	ENST00000566638.1_1_16:67283046-67298355:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.1986389160156	2	415.260728	828.506903	0.59009	0.00024504	-0.49987	-0.00020757	0.090221	3.7465E-05	415.2604492821112	20.655	1.3226	20.459	20.236	21.559	-0.19577					56	26	5	0	0	0	0.027866	1	587	587		30.504	0	1	1432900			37769	4926	25876	25931	43392	43392					0.08578990248417995
LAVALFLLVL	10	Unmodified	_LAVALFLLVL_					0	0	0		nc|ENSG00000016864|Q68CQ7-2|GLT8D1;ENST00000484163.5_1_3:52729811-52734476:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1;ENST00000485899.1_1_3:52730485-52734476:-|nuORF	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3052368164062	2	536.362453	1070.71035	-0.8955	-0.00048031	3.8481	0.002064	2.9526	0.0015836	536.365675084222	47.975	0.16544	47.975	47.906	48.072	0					6	4	2	0	0	0	0.03519	1	4873	4873		19.36	6.4008	1	346370			37770	15296	25877	25932	43393	43393					0.1778271497003061
LAVATRRY	8	Unmodified	_LAVATRRY_					0	0	0		ENSG00000236446|ENST00000371311|CT47B1	ENSG00000236446|ENST00000371311|CT47B1	ENSG00000236446|ENST00000371311|CT47B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.26025390625	2	475.282526	948.550499	0.31841	0.00015134	-3.7814	-0.0017973	-3.463	-0.0016459	475.28045529500366	43.651	0.64995	43.682	43.267	43.917	0.030827					19	17	2	0	0	0	0.027866	1	4055	4055		35.201	6.0512	1	250250			37771	10739	25878	25933	43394	43394					0.07416599745556596
LAVDDDPEV	9	Unmodified	_LAVDDDPEV_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7769775390625	2	486.729655	971.444756	-0.35654	-0.00017354	-2.5272	-0.00123	-2.8837	-0.0014036	486.72857474852975	41.972	0.39281	41.84	41.528	41.921	-0.13219					12	10	2	0	0	0	0.022643	1	3770	3770		76.847	0	1	139450			37772	2694	25879	25934	43395	43395					-0.04210825681229835
LAVDLVGDA	9	Unmodified	_LAVDLVGDA_					0	0	0		sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.7403564453125	2	436.739825	871.465098	0.1546	6.7519E-05	1.5356	0.00067066	1.6902	0.00073818	436.740338859129	45.053	0.65343	45.096	44.79	45.444	0.043877					47	18	3	0	0	0	0.53979	1	4298	4298		56.721	1.2168	1	2419500			37773	37944	25880	25935	43396	43396					0.024223897692309038
LAVELLSLLAD	11	Unmodified	_LAVELLSLLAD_					0	0	0		nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	nc|ENSG00000164053|Q8WXE1-5|ATRIP	nc|ENSG00000164053|Q8WXE1-5|ATRIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.2443237304688	2	578.844822	1155.67509	-0.8782	-0.00050834	1.5622	0.00090428	0.68401	0.00039594	578.8462499513059	65.533	0.20483	65.282	65.148	65.353	-0.25112					6	4	2	0	0	0	0.024762	1	7465	7465		30.318	0	1	57889			37774	7199	25881	25936	43397	43397					0.1034800765160071
LAVESLQQ	8	Unmodified	_LAVESLQQ_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.2685852050781	2	444.245275	886.475997	-0.82323	-0.00036572	1.4918	0.00066274	0.6686	0.00029702	444.2457862710145	28.397	0.86754	28.397	28.037	28.904	0					33	20	2	0	0	0	0.027866	1	1701	1701		40.573	0	1	511530	+		37775	25831	25882	25937	43398	43398					0.028217921435384596
LAVFKTNSPL	10	Unmodified	_LAVFKTNSPL_					0	0	0			REV__nc|ENSG00000160049|O00273-2|DFFA	REV__nc|ENSG00000160049|O00273-2|DFFA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.318115234375	2	545.318774	1088.623	-0.94688	-0.00051635	0.23397	0.00012759	-0.71291	-0.00038876	545.3188073728357	81.65	0.9371	81.65	81.258	82.195	0					61	22	4	0	0	0	0.50466	1	10167	10167		87.754	2.5935	1	2259600	+		37776	25286	25883	25938	43399	43399					0.08222889028479585
LAVFKTNSPL	10	Unmodified	_LAVFKTNSPL_					0	0	0			REV__nc|ENSG00000160049|O00273-2|DFFA	REV__nc|ENSG00000160049|O00273-2|DFFA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3182983398438	2	545.318774	1088.623	-0.86422	-0.00047127	0.039285	2.1423E-05	-0.82493	-0.00044985	545.3187628812475	81.713	0.89104	81.582	81.298	82.189	-0.13075					62	21	4	0	0	0	0.42446	2	10140	10140;10150		96.19	8.494	1	2537000	+		37777	25286	25883	25938	43400;43401	43400					0.08222889028479585
LAVFKTNSPL	10	Unmodified	_LAVFKTNSPL_					0	0	0			REV__nc|ENSG00000160049|O00273-2|DFFA	REV__nc|ENSG00000160049|O00273-2|DFFA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.318359375	2	545.318774	1088.623	-1.3058	-0.0007121	0.44825	0.00024444	-0.8576	-0.00046767	545.3189057426254	81.554	0.98108	81.578	81.248	82.229	0.023903					64	23	4	0	0	0	0.60198	2	10079	10079;10091		76.774	4.8967	1	2509900	+		37778	25286	25883	25938	43402;43403	43402					0.08222889028479585
LAVGAHALSK	10	Unmodified	_LAVGAHALSK_					0	0	0			REV__ENSG00000006062|ENST00000344686|MAP3K14	REV__ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7896728515625	2	483.790184	965.565815	-0.191	-9.2404E-05	-0.022069	-1.0677E-05	-0.21307	-0.00010308	483.7900658872306	47.71	1.4158	47.557	47.089	48.505	-0.15301					76	41	3	0	0	0	0.85955	1	4786	4786		56.721	12.604	1	5322100	+		37779	19821	25884	25939	43404	43404					0.08165466542766353
LAVGARRW	8	Unmodified	_LAVGARRW_					0	0	0			REV__ENST00000366730.5_1_1:228327714-228327759:+|nuORF	REV__ENST00000366730.5_1_1:228327714-228327759:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.775390625	2	464.777411	927.540269	0.79679	0.00037033	-2.365	-0.0010992	-1.5682	-0.00072886	464.77617105274163	51.174	0.54122	50.993	50.76	51.302	-0.18071					31	13	3	0	0	0	0.85409	1	5263	5263		54.765	4.7401	1	3101900	+		37780	30985	25885	25940	43405	43405					0.07360036810985093
LAVGLALTGN	10	Unmodified	_LAVGLALTGN_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7749328613281	2	464.776742	927.538931	-0.081102	-3.7694E-05	-0.21119	-9.8155E-05	-0.29229	-0.00013585	464.77653628616827	51.298	0.53358	51.022	50.74	51.274	-0.27643					44	13	4	0	0	0	0.96965	1	5272	5272		49.442	1.7842	1	3265500			37781	8460	25886	25941	43406	43406					0.07226357931563143
LAVGNIKP	8	Unmodified	_LAVGNIKP_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.90869140625	2	406.255446	810.496338	0.51365	0.00020867	3.2124	0.001305	3.726	0.0015137	406.2565483788293	55.097	0.89806	54.866	54.459	55.357	-0.23087					40	25	3	0	0	0	0.027866	1	5971	5971		20.482	6.7065	1	301280			37782	9617	25887	25942	43407	43407					0.08351007593989834
LAVGREIL	8	Unmodified	_LAVGREIL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2585144042969	2	435.774003	869.533452	0.61766	0.00026916	0.42145	0.00018366	1.0391	0.00045282	435.7739976651223	24.472	0.41145	24.55	24.319	24.731	0.078344					15	8	3	0	0	0	0.027866	1	1020	1020		24.203	0	1	49225			37783	2015	25888	25943	43408	43408					0.09346679139753178
LAVGREIL	8	Unmodified	_LAVGREIL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.774003	869.533452	-0.22406	-9.7642E-05	0.23382	0.00010189	0.0097579	4.2522E-06	435.7739815074039	24.594	0.35614	24.594	24.341	24.697	0	0.040062	-0.00053736	NaN	24.203	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67573			37784	2015	25888	25943							0.09346679139753178
LAVGREIL	8	Unmodified	_LAVGREIL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.774003	869.533452	-1.0142	-0.00044198	1.5542	0.00067728	0.53996	0.0002353	435.7745611074638	24.565	0.40442	24.518	24.264	24.669	-0.047148	-0.03602	0.00061341	NaN	24.203	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54042			37785	2015	25888	25943							0.09346679139753178
LAVGTPRL	8	Unmodified	_LAVGTPRL_					0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.76104736328125	2	413.760895	825.507237	0.50956	0.00021083	-0.85787	-0.00035495	-0.34832	-0.00014412	413.7603779218904	45.443	1.0112	45.443	45.079	46.09	0					67	29	4	0	0	0	0.68535	1	4424	4424		68.485	0	1	3663300	+		37786	23564	25889	25944	43409	43409					0.08750409968274653
LAVHMLIDL	9	Unmodified	_LAVHMLIDL_					0	0	0			REV__ENST00000591899.7_1_19:1598028-1599464:-|nuORF	REV__ENST00000591899.7_1_19:1598028-1599464:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2874145507812	2	512.79662	1023.57869	0.17307	8.875E-05	3.848	0.0019732	4.021	0.002062	513.2998963818703	72.076	0.44742	72.085	71.802	72.25	0.0097733					16	11	2	0	0	0	0.024386	1	8651	8651		18.324	0	1	148970	+		37787	35734	25890	25945	43410	43410					0.06784161610653427
LAVHVTFEV	9	Unmodified	_LAVHVTFEV_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF;REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7841796875	2	507.784567	1013.55458	0.2616	0.00013284	-0.41506	-0.00021076	-0.15345	-7.7922E-05	507.78429261693026	72.74	1.1878	72.749	72.331	73.519	0.0096512					69	29	4	0	0	0	0.36105	1	8812	8812		68.485	8.1907	1	4612600	+		37788	22345;27808	25891	25946	43411	43411					0.04834644448612835
LAVICSRA	8	Unmodified	_LAVICSRA_					0	0	0		ENSG00000188389|ENST00000334409|PDCD1	ENSG00000188389|ENST00000334409|PDCD1	ENSG00000188389|ENST00000334409|PDCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2285461425781	2	416.739105	831.463658	0.49567	0.00020656	-4.3268	-0.0018031	-3.8311	-0.0015966	416.7371642614547	55.092	0.59912	54.886	54.611	55.21	-0.20613					37	16	3	0	0	0	0.027866	1	5860	5860		13.775	1.5685	1	1407500			37789	9716	25892	25947	43412	43412					0.04118477199494919
LAVIKVEP	8	Unmodified	_LAVIKVEP_					0	0	0		nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.2868957519531	2	434.778754	867.542954	0.026628	1.1577E-05	3.0975	0.0013467	3.1241	0.0013583	434.78001774894375	53.578	2.2468	53.578	52.311	54.558	0					71	61	2	0	0	0	0.027866	1	5613	5613		33.516	1.5607	1	197860			37790	18826	25893	25948	43413	43413					0.10388447425282266
LAVIKVEP	8	Unmodified	_LAVIKVEP_					0	0	0		nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.2866516113281	2	434.778754	867.542954	0.27506	0.00011959	2.8085	0.0012211	3.0836	0.0013407	434.77992004185353	53.435	2.155	53.531	52.203	54.358	0.095669					86	58	2	0	0	0	0.027866	1	5512	5512		25.45	0	1	191130			37791	18826	25893	25948	43414	43414					0.10388447425282266
LAVINAEIQ	9	Unmodified	_LAVINAEIQ_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.781005859375	2	485.782025	969.549496	0.1083	5.2612E-05	-1.7148	-0.000833	-1.6065	-0.00078039	485.7810822311062	80.946	1.0606	80.708	80.409	81.47	-0.23784					58	25	3	0	0	0	0.2101	1	9727	9727		87.696	4.946	1	3894200	+		37792	20989	25894	25949	43415	43415					0.06350340586004677
LAVINAEIQ	9	Unmodified	_LAVINAEIQ_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.782025	969.549496	-0.65305	-0.00031724	0.84881	0.00041233	0.19575	9.5093E-05	485.78220065516905	80.839	0.92091	80.839	80.544	81.464	0	0.056048	0.00064189	NaN	87.696	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1054800	+		37793	20989	25894	25949							0.06350340586004677
LAVINAEIQ	9	Unmodified	_LAVINAEIQ_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.782025	969.549496	-0.94967	-0.00046133	1.1096	0.00053905	0.15997	7.7712E-05	485.7823452718129	81.022	0.71979	80.891	80.619	81.339	-0.13075	0.1085	0.00089531	NaN	87.696	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	875520	+		37794	20989	25894	25949							0.06350340586004677
LAVINAEIQ	9	Unmodified	_LAVINAEIQ_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.782025	969.549496	-1.3259	-0.0006441	1.4608	0.00070965	0.13494	6.5551E-05	485.78252578507545	80.799	0.83834	80.823	80.573	81.411	0.023911	0.040535	0.0012365	NaN	87.696	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835840	+		37795	20989	25894	25949							0.06350340586004677
LAVINAEIQ	9	Unmodified	_LAVINAEIQ_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	485.782025	969.549496	0.1083	5.2612E-05	-1.7148	-0.000833	-1.6065	-0.00078039	485.7810822311062	80.946	1.0606	80.708	80.409	81.47	-0.23784	-0.074886	-0.0018488	NaN	87.696	58	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3894200	+		37796	20989	25894	25949							0.06350340586004677
LAVKHQVY	8	Unmodified	_LAVKHQVY_					0	0	0		ENST00000503780.5_2_4:175204968-175219170:+|nuORF	ENST00000503780.5_2_4:175204968-175219170:+|nuORF	ENST00000503780.5_2_4:175204968-175219170:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.29095458984375	2	479.279452	956.544351	-0.81457	-0.00039041	1.0564	0.00050633	0.24186	0.00011592	479.27954517864487	47.386	0.86325	47.445	47.032	47.895	0.059097					52	25	3	0	0	0	0.027866	1	4627	4627		28.254	0	1	3009700			37797	15700	25895	25950	43416	43416					0.0643408151404401
LAVKQKTSL	9	Unmodified	_LAVKQKTSL_					0	0	0			REV__nc|ENSG00000112655|Q13308-2|PTK7	REV__nc|ENSG00000112655|Q13308-2|PTK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3006591796875	2	494.313492	986.612431	0.071343	3.5266E-05	2.841	0.0014043	2.9123	0.0014396	494.31410190470734	96.202	0.71524	96.066	95.853	96.568	-0.13671					21	16	2	0	0	0	0.024405	1	11947	11947		44.117	6.9577	1	145280	+		37798	36574	25896	25951	43417	43417					0.11858906374061462
LAVKTESS	8	Unmodified	_LAVKTESS_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.7325134277344	2	417.732	833.449448	-0.71424	-0.00029836	2.449	0.001023	1.7348	0.00072468	417.7329459232781	39.272	0.90195	39.108	38.829	39.731	-0.16458					58	23	4	0	0	0	0.99042	1	3305	3305		38.806	1.647	1	5841200			37799	9607	25897	25952	43418	43418					0.0260610325219659
LAVKTSINL	9	Unmodified	_LAVKTSINL_					0	0	0			REV__nc|ENSG00000136243|O15504-2|NUP42	REV__nc|ENSG00000136243|O15504-2|NUP42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.76898193359375	2	479.800217	957.585882	-0.11008	-5.2818E-05	0.022321	1.0709E-05	-0.087763	-4.2109E-05	479.80004343510706	52.009	1.1025	51.862	51.263	52.366	-0.14735					59	30	4	0	0	0	0.0242	1	5489	5489		60.118	0	1	1667000	+		37800	23641	25898	25953	43419	43419					0.1053921748269886
LAVLCQLAN	9	Unmodified	_LAVLCQLAN_					0	0	0			REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7720031738281	2	472.76532	943.516088	0.7316	0.00034588	-3.5112	-0.00166	-2.7796	-0.0013141	472.7632106103485	46.774	0.80343	46.774	46.412	47.216	0					55	21	4	0	0	0	0.024325	1	4624	4624		40.573	15.122	1	1356100	+		37801	37709	25899	25954	43420	43420					0.042070155424539735
LAVLCQLAN	9	Unmodified	_LAVLCQLAN_					0	0	0			REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7720947265625	2	472.76532	943.516088	0.40281	0.00019043	-2.9594	-0.0013991	-2.5566	-0.0012087	472.76325414875276	46.856	1.0981	46.703	46.098	47.196	-0.15301					69	29	4	0	0	0	0.024354	1	4636	4636		47.916	21.119	1	1176700	+		37802	37709	25899	25954	43421	43421					0.042070155424539735
LAVLCQLAN	9	Unmodified	_LAVLCQLAN_					0	0	0			REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.77166748046875	2	472.76532	943.516088	0.14201	6.714E-05	-2.5936	-0.0012262	-2.4516	-0.001159	472.76355118724433	46.715	0.79813	46.766	46.408	47.206	0.051395					62	21	4	0	0	0	0.024381	1	4561	4561		37.159	1.9584	1	1261400	+		37803	37709	25899	25954	43422	43422					0.042070155424539735
LAVLCQLAN	9	Unmodified	_LAVLCQLAN_					0	0	0			REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	REV__TMEM225|p.I174Kfs*39|1|0.07|ENSG00000204300|chr11:123883295-123883296|-/AAAAGCTT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.76532	943.516088	0.2155	0.00010188	-8.2098	-0.0038813	-7.9943	-0.0037794	472.7633186147896	47.101	0.48894	46.831	46.561	47.05	-0.26939	0.062636	-0.0045891	NaN	24.203	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186450	+		37804	37709	25899	25954							0.042070155424539735
LAVLLPKE	8	Unmodified	_LAVLLPKE_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7875671386719	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	1.0133	1	3581	3581		35.201	0	1	39693000			37805	4816	25900	25955	43423	43423					0.11308733942325944
LAVLLPKE	8	Unmodified	_LAVLLPKE_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7876892089844	2	441.786579	881.558604	-0.75125	-0.00033189	3.7526	0.0016578	3.0013	0.0013259	441.788141210744	40.907	2.019	40.676	40.158	42.177	-0.23029					183	54	5	0	0	0	0.97924	1	3609	3609		40.573	0	1	21377000			37806	4816	25900	25955	43424	43424					0.11308733942325944
LAVLQAER	8	Unmodified	_LAVLQAER_					0	0	0		nc|ENSG00000131037|Q8TE68-3|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENSG00000131037|ENST00000201647|EPS8L1	nc|ENSG00000131037|Q8TE68-3|EPS8L1	nc|ENSG00000131037|Q8TE68-3|EPS8L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2689514160156	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.88442	1	3111	3111		52.299	2.8576	1	136700000			37807	4487	25901	25956	43425	43425					0.07029491134369437
LAVLRDRAQQI	11	Unmodified	_LAVLRDRAQQI_					0	0	0		ENST00000467826.5_1_9:130570554-130576503:+|nuORF;ENST00000488506.5_1_9:130570554-130575491:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS	ENST00000467826.5_1_9:130570554-130576503:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS	ENST00000467826.5_1_9:130570554-130576503:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8824462890625	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	0.9728	1	11936	11936		42.864	5.0528	1	3558500			37808	14854;5062	25902	25957	43426	43426					0.12211243991396259
LAVLRSLW	8	Unmodified	_LAVLRSLW_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;nc|ENSG00000186281|Q6NUI2-5|GPAT2	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.29815673828125	2	479.297645	956.580737	0.30726	0.00014727	-0.44439	-0.000213	-0.13714	-6.5729E-05	479.29727597856987	72.666	0.55943	72.389	72.154	72.713	-0.2769					28	12	3	0	0	0	0.62178	1	8519	8519		74.255	22.92	1	560420			37809	9534	25903	25958	43427	43427					0.10070958410744879
LAVLRSLW	8	Unmodified	_LAVLRSLW_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;nc|ENSG00000186281|Q6NUI2-5|GPAT2	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2984619140625	2	479.297645	956.580737	0.023684	1.1352E-05	-0.13411	-6.428E-05	-0.11043	-5.2929E-05	479.2974383672122	72.657	0.55392	72.392	72.127	72.681	-0.26479					32	12	3	0	0	0	0.50717	2	8528	8528;8541		84.916	18.751	1	641050			37810	9534	25903	25958	43428;43429	43428					0.10070958410744879
LAVLRSLW	8	Unmodified	_LAVLRSLW_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;nc|ENSG00000186281|Q6NUI2-5|GPAT2	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2987365722656	2	479.297645	956.580737	-0.30178	-0.00014464	-0.082343	-3.9467E-05	-0.38412	-0.00018411	479.29746002943193	72.478	0.59071	72.28	72.034	72.625	-0.1981					32	13	3	0	0	0	0.53593	2	8496	8485;8496		82.241	26.736	1	808440			37811	9534	25903	25958	43430;43431	43431					0.10070958410744879
LAVLTKAIP	9	Unmodified	_LAVLTKAIP_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7373352050781	2	463.307678	924.600803	0.26887	0.00012457	0.01506	6.9776E-06	0.28393	0.00013155	463.30752648624264	72.38	0.81303	72.38	72.054	72.867	0					33	19	2	0	0	0	0.024412	1	8849	8849		40.573	5.3719	1	558670	+		37812	26568	25904	25959	43432	43432					0.13548709350698118
LAVLTPVTN	9	Unmodified	_LAVLTPVTN_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7406311035156	2	464.279118	926.543683	-0.052882	-2.4552E-05	-0.11107	-5.1566E-05	-0.16395	-7.6118E-05	464.27896751596296	52.835	0.71465	52.688	52.488	53.203	-0.14723					35	18	2	0	0	0	0.024427	1	5651	5651		34.173	11.13	1	586390			37813	5750	25905	25960	43433	43433					0.07747242074322003
LAVLTPVTN	9	Unmodified	_LAVLTPVTN_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.279118	926.543683	0.018011	8.3621E-06	2.6859	0.001247	2.7039	0.0012554	464.27895124180117	52.777	0.9007	52.65	52.353	53.253	-0.12706	-0.063453	0.0029108	NaN	34.173	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423200			37814	5750	25905	25960							0.07747242074322003
LAVLTPVTN	9	Unmodified	_LAVLTPVTN_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.279118	926.543683	0.55325	0.00025686	-1.1527	-0.00053515	-0.5994	-0.00027829	464.27875463254384	53.041	0.66321	52.782	52.523	53.186	-0.25838	0.069052	-0.00065355	NaN	34.173	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654340			37815	5750	25905	25960							0.07747242074322003
LAVLTPVTN	9	Unmodified	_LAVLTPVTN_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.279118	926.543683	-0.074616	-3.4642E-05	-0.51518	-0.00023919	-0.5898	-0.00027383	464.27900080926923	52.923	1.0337	52.733	52.43	53.463	-0.18982	0.02008	-6.1618E-05	NaN	34.173	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876230			37816	5750	25905	25960							0.07747242074322003
LAVLVKDVV	9	Unmodified	_LAVLVKDVV_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.298095703125	2	478.312961	954.611368	-0.029902	-1.4302E-05	0.1549	7.4092E-05	0.125	5.979E-05	478.312836488428	70.409	0.54121	70.422	70.272	70.813	0.012421					23	12	3	0	0	0	0.024386	1	8413	8413		42.474	8.9589	1	505440			37817	1299	25906	25961	43434	43434					0.13224692005132965
LAVLVKDVV	9	Unmodified	_LAVLVKDVV_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.312961	954.611368	1.2556	0.00060057	-1.1927	-0.00057049	0.062894	3.0083E-05	478.31208241224175	70.377	0.32845	70.377	70.241	70.569	0	-0.042184	-0.00084639	NaN	33.516	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531680			37818	1299	25906	25961							0.13224692005132965
LAVLVKDVV	9	Unmodified	_LAVLVKDVV_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.312961	954.611368	1.1719	0.00056054	-0.87484	-0.00041845	0.29707	0.00014209	478.31223910843096	70.751	0.67662	70.458	70.241	70.918	-0.29292	0.039323	-0.00054231	NaN	33.516	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344460			37819	1299	25906	25961							0.13224692005132965
LAVLVLVR	8	Unmodified	_LAVLVLVR_					0	0	0			REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7879333496094	2	441.810388	881.606223	-0.13237	-5.8484E-05	-0.10718	-4.7354E-05	-0.23956	-0.00010584	441.81036445062136	43.22	0.32798	43.081	42.956	43.284	-0.13929					9	8	2	0	0	0	0.027866	1	4021	4021		20.482	0	1	101210	+		37820	30673	25907	25962	43435	43435					0.16068432933172971
LAVLVLVR	8	Unmodified	_LAVLVLVR_					0	0	0			REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.810388	881.606223	-0.46195	-0.00020409	-4.7581	-0.0021022	-5.22	-0.0023063	441.80820981344255	43.244	0.21875	43.007	42.917	43.136	-0.23736	-0.036581	-0.00062305	NaN	20.482	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91870	+		37821	30673	25907	25962							0.16068432933172971
LAVLVLVR	8	Unmodified	_LAVLVLVR_					0	0	0			REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	441.810388	881.606223	-0.4024	-0.00017778	-4.8915	-0.0021611	-5.2939	-0.0023389	441.8079966904748	43.269	0.14404	43.043	42.989	43.133	-0.22597	-0.0004739	-0.00074092	NaN	20.482	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167200	+		37822	30673	25907	25962							0.16068432933172971
LAVLWLDAP	9	Unmodified	_LAVLWLDAP_					0	0	0		ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	ENSG00000176798|ENST00000641819|OR51L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8314514160156	2	499.289485	996.564418	-1.0372	-0.00051786	-4.2218	-0.0021079	-5.259	-0.0026258	499.2869377408929	44.879	0.55157	44.731	44.422	44.974	-0.1488					20	15	2	0	0	0	0.024357	1	4247	4247		44.531	17.838	1	116740			37823	8671	25908	25963	43436	43436					0.06599832453980525
LAVLWVLSN	9	Unmodified	_LAVLWVLSN_					0	0	0		ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8284912109375	2	507.80276	1013.59097	0.1032	5.2405E-05	-4.1389	-0.0021017	-4.0357	-0.0020493	507.80049924512616	67.43	0.81693	67.454	67.23	68.047	0.023903					38	20	3	0	0	0	0.024183	1	7983	7983		31.955	0	1	1088800			37824	8338	25909	25964	43437	43437					0.08471521345313704
LAVMPSLLN	9	Unmodified	_LAVMPSLLN_					0	0	0		ENST00000436120.6_1_19:37880008-37880230:+|nuORF	ENST00000436120.6_1_19:37880008-37880230:+|nuORF	ENST00000436120.6_1_19:37880008-37880230:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2774658203125	2	479.275521	956.536489	0.97614	0.00046784	3.0162	0.0014456	3.9924	0.0019134	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.70186	1	10069	10069		45.952	0	1	7774800			37825	14274	25910	25965	43438	43438					0.0564818620226788
LAVNRSPVA	9	Unmodified	_LAVNRSPVA_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7742614746094	2	463.774534	925.534515	-0.68728	-0.00031874	1.8815	0.00087258	1.1942	0.00055384	463.77454884767565	49.115	0.95898	49.19	48.772	49.731	0.074192					81	25	4	0	0	0	0.29158	1	4974	4974		76.774	5.4784	1	10178000			37826	4441	25911	25966	43439	43439					0.06876893508660942
LAVPDQPSL	9	Unmodified	_LAVPDQPSL_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2613220214844	2	470.260925	938.507297	-1.1005	-0.00051753	1.2106	0.00056929	0.11006	5.1757E-05	470.26138382824826	33.282	0.43571	33.117	32.76	33.195	-0.16565					23	10	3	0	0	0	0.20967	1	2347	2347		87.754	8.3033	1	877060	+		37827	23452	25912	25967	43440	43440					0.035583651776164515
LAVPDQPSL	9	Unmodified	_LAVPDQPSL_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	470.260925	938.507297	-1.1005	-0.00051753	1.2106	0.00056929	0.11006	5.1757E-05	470.26138382824826	33.282	0.43571	33.117	32.76	33.195	-0.16565	-0.025833	0.00063925	NaN	87.754	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	877060	+		37828	23452	25912	25967							0.035583651776164515
LAVPEVKI	8	Unmodified	_LAVPEVKI_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7801513671875	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	0.93274	1	4003	4003		47.916	5.4411	1	4335900	+		37829	25909	25913	25968	43441	43441					0.10388447425293634
LAVPGVWALPV	11	Unmodified	_LAVPGVWALPV_					0	0	0		ENST00000581139.1_1_18:2946096-2946618:-|nuORF;ENST00000320585.10_1_11:89956075-89956204:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	ENST00000581139.1_1_18:2946096-2946618:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.791259765625	2	561.33951	1120.66447	-1.7536	-0.00098438	2.3033	0.001293	0.54971	0.00030857	561.3407911978658	52.216	0.36912	51.947	51.831	52.2	-0.26903					14	9	2	0	0	0	0.024764	1	5395	5395		31.955	9.995	1	113200			37830	17160	25914	25969	43442	43442					0.10896069787781926
LAVPKRSA	8	Unmodified	_LAVPKRSA_					0	0	0			REV__ENST00000272298.11_1_2:47397893-47403686:-|nuORF	REV__ENST00000272298.11_1_2:47397893-47403686:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7396545410156	2	421.266345	840.518136	-0.38273	-0.00016123	0.57158	0.00024079	0.18886	7.9559E-05	421.2664531611927	23.008	0.5718	23.008	22.711	23.283	0					23	12	3	0	0	0	0.027866	1	861	861		26.693	9.3279	1	277730	+		37831	29812	25915	25970	43443	43443					0.09149812342559471
LAVPTAAGDL	10	Unmodified	_LAVPTAAGDL_					0	0	0			REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2637023925781	2	464.260925	926.507297	0.67752	0.00031454	-0.28019	-0.00013008	0.39732	0.00018446	464.2606230548131	70.67	0.62529	70.67	70.44	71.065	0					30	14	3	0	0	0	0.57825	1	8544	8544		79.451	4.4077	1	863380	+		37832	36768	25916	25971	43444	43444					0.04110365177609765
LAVQAQVPI	9	Unmodified	_LAVQAQVPI_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;ENSG00000169692|ENST00000371696|AGPAT2;ENST00000490711.5_1_6:32137055-32144296:-|nuORF;ENSG00000204310|ENST00000375107|AGPAT1	ENST00000472820.1_1_9:139568206-139571631:-|nuORF;ENSG00000204310|ENST00000375107|AGPAT1	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.2889709472656	2	469.78711	937.559667	-0.28335	-0.00013311	-3.0531	-0.0014343	-3.3365	-0.0015674	469.7851605818972	49.109	0.28763	48.829	48.647	48.934	-0.27977					11	7	2	0	0	0	0.024412	1	4871	4871		40.573	12.69	1	87515			37833	7966;10328	25917	25972	43445	43445					0.08838948311222339
LAVQAQVPI	9	Unmodified	_LAVQAQVPI_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;ENSG00000169692|ENST00000371696|AGPAT2;ENST00000490711.5_1_6:32137055-32144296:-|nuORF;ENSG00000204310|ENST00000375107|AGPAT1	ENST00000472820.1_1_9:139568206-139571631:-|nuORF;ENSG00000204310|ENST00000375107|AGPAT1	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.78711	937.559667	-0.7802	-0.00036653	-2.8031	-0.0013169	-3.5833	-0.0016834	469.7853065682868	48.885	0.22343	48.784	48.618	48.841	-0.1008	-0.0053065	-1.0043E-05	NaN	47.916	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57266			37834	7966;10328	25917	25972							0.08838948311222339
LAVQLRALL	9	Unmodified	_LAVQLRALL_					0	0	0			REV__nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	REV__nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.83154296875	2	498.831852	995.649151	-1.2666	-0.00063182	0.22998	0.00011472	-1.0366	-0.0005171	498.83196788635445	44.558	1.0747	44.347	44.014	45.089	-0.21109					79	28	4	0	0	0	0.40179	1	4155	4155		65.803	2.4969	1	12668000	+		37835	24116	25918	25973	43446	43446					0.15115202990614307
LAVRASLR	8	Unmodified	_LAVRASLR_					0	0	0		ENSG00000196932|ENST00000399298|TMEM26;ENST00000507507.1_1_10:63170082-63173364:-|nuORF	ENSG00000196932|ENST00000399298|TMEM26	ENSG00000196932|ENST00000399298|TMEM26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2738342285156	2	443.285069	884.555585	0.14367	6.3688E-05	-0.63732	-0.00028252	-0.49365	-0.00021883	443.2842883043563	50.627	0.40199	50.478	50.356	50.758	-0.14916					14	11	2	0	0	0	0.027866	1	5311	5311		40.573	0	1	241860			37836	9936	25919	25974	43447	43447					0.10868903608172786
LAVRFGGPVPP	11	Unmodified	_LAVRFGGPVPP_					0	0	0			REV__nc|ENSG00000095596|O43174-2|CYP26A1	REV__nc|ENSG00000095596|O43174-2|CYP26A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.30126953125	2	555.326934	1108.63931	-0.034357	-1.9079E-05	-4.3347	-0.0024072	-4.369	-0.0024262	555.324450109576	46.478	0.56437	46.53	46.308	46.873	0.051395					20	15	2	0	0	0	0.024724	1	4510	4510		27.882	0	1	128400	+		37837	20970	25920	25975	43448	43448					0.08934014985243266
LAVSAPGRVN	10	Unmodified	_LAVSAPGRVN_					0	0	0		ENST00000589030.1_1_17:73759945-73761208:-|nuORF;ENST00000592494.1_1_17:73759392-73761232:-|nuORF;GALK1|p.E261Kfs*3|1|0.17|ENSG00000108479|chr17:75762716-75762716|C/-|frameshift_variant;ENSG00000108479|ENST00000588479|GALK1	ENST00000589030.1_1_17:73759945-73761208:-|nuORF	ENST00000589030.1_1_17:73759945-73761208:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.3059387207031	2	492.285266	982.555979	0.97645	0.00048069	0.98167	0.00048326	1.9581	0.00096395	492.28478180523905	59.096	0.84999	59.096	58.787	59.637	0					24	22	2	0	0	0	0.03519	1	6777	6777		32.812	7.2384	1	183480			37838	2902	25921	25976	43449	43449					0.06400278537375925
LAVSRGRL	8	Unmodified	_LAVSRGRL_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.2474670410156	2	436.277244	870.539935	-0.41597	-0.00018148	-2.9851	-0.0013023	-3.4011	-0.0014838	436.2759572690228	35.355	0.40219	35.355	35.129	35.531	0					14	10	2	0	0	0	0.027866	1	2705	2705		79.939	19.645	1	70274			37839	4539	25922	25977	43450	43450					0.09948617091151846
LAVSVTASS	9	Unmodified	_LAVSVTASS_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.7331848144531	2	417.732	833.449448	-0.71424	-0.00029836	2.449	0.001023	1.7348	0.00072468	417.7329459232781	39.272	0.90195	39.108	38.829	39.731	-0.16458					58	23	4	0	0	0	0.80658	1	3342	3342		38.806	5.2906	1	5841200	+		37840	26001	25923	25978	43451	43451					0.0260610325219659
LAVTAPGLTSL	11	Unmodified	_LAVTAPGLTSL_					0	0	0			REV__ENST00000463001.5_1_1:157765953-157771747:-|nuORF	REV__ENST00000463001.5_1_1:157765953-157771747:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7512817382812	2	521.810782	1041.60701	-0.11399	-5.948E-05	4.2507	0.0022181	4.1367	0.0021586	521.8127316312105	42.186	1.4427	41.956	41.614	43.057	-0.23029					84	38	3	0	0	0	0.024747	1	3779	3779		24.519	2.5593	1	659830	+		37841	25586	25924	25979	43452	43452					0.08787182791570558
LAVTENLHNL	10	Unmodified	_LAVTENLHNL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3106079101562	2	562.308938	1122.60332	0.14969	8.4173E-05	3.3598	0.0018892	3.5095	0.0019734	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.40067	1	11052	11052		98.629	0	1	3232300	+	+	37842	19530	25925	25980	43453	43453					0.046925130176987295
LAVTLPSNL	9	Unmodified	_LAVTLPSNL_					0	0	0		ENST00000457952.5_1_2:70417551-70417746:-|nuORF	ENST00000457952.5_1_2:70417551-70417746:-|nuORF	ENST00000457952.5_1_2:70417551-70417746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7585754394531	2	464.279118	926.543683	0.13333	6.1903E-05	-2.1114	-0.00098026	-1.978	-0.00091836	464.27851133277034	53.543	0.8091	53.638	53.195	54.004	0.095669					57	22	4	0	0	0	0.023837	1	5688	5688		54.776	8.8041	1	2303500			37843	14618	25926	25981	43454	43454					0.07747242074333371
LAVVARRY	8	Unmodified	_LAVVARRY_					0	0	0		ENSG00000242362|ENST00000458218|CT47A2;ENSG00000237957|ENST00000439466|CT47A5;ENSG00000236371|ENST00000433030|CT47A1;ENSG00000236126|ENST00000441330|CT47A3;ENSG00000230594|ENST00000415858|CT47A4;ENSG00000230347|ENST00000457977|CT47A8;ENSG00000228517|ENST00000434883|CT47A7;ENSG00000226929|ENST00000457020|CT47A11;ENSG00000226685|ENST00000419982|CT47A12;ENSG00000226600|ENST00000417256|CT47A9;ENSG00000226023|ENST00000419194|CT47A6;ENSG00000224089|ENST00000430448|CT47A10	ENSG00000242362|ENST00000458218|CT47A2	ENSG00000242362|ENST00000458218|CT47A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2718811035156	2	474.292894	946.571235	-0.33427	-0.00015854	-3.5904	-0.0017029	-3.9247	-0.0018614	474.2911214541466	80.971	1.5131	80.82	80.091	81.604	-0.15123					58	36	2	0	0	0	0.027866	1	9942	9942		16.705	0	1	102140			37844	10646	25927	25982	43455	43455					0.09581190125220473
LAVVAVLPS	9	Unmodified	_LAVVAVLPS_					0	0	0			REV__ENST00000448867.1_1_X:102001053-102003748:+|nuORF	REV__ENST00000448867.1_1_X:102001053-102003748:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7803955078125	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	0.90698	1	3646	3646		31.955	0	1	6285600	+		37845	32663	25928	25983	43456	43456					0.10388447425293634
LAVVAVLPS	9	Unmodified	_LAVVAVLPS_					0	0	0			REV__ENST00000448867.1_1_X:102001053-102003748:+|nuORF	REV__ENST00000448867.1_1_X:102001053-102003748:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7798767089844	2	434.778754	867.542954	0.012934	5.6234E-06	3.3564	0.0014593	3.3694	0.0014649	434.7800761644998	42.495	1.8289	42.363	41.753	43.582	-0.13219					167	51	4	0	0	0	0.88411	1	3910	3910		33.516	3.674	1	2479100	+		37846	32663	25928	25983	43457	43457					0.10388447425293634
LAVVAVLPS	9	Unmodified	_LAVVAVLPS_					0	0	0			REV__ENST00000448867.1_1_X:102001053-102003748:+|nuORF	REV__ENST00000448867.1_1_X:102001053-102003748:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.78021240234375	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	0.88411	1	3599	3599		33.516	1.5607	1	6443300	+		37847	32663	25928	25983	43458	43458					0.10388447425293634
LAVVLMHS	8	Unmodified	_LAVVLMHS_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.2737121582031	2	435.249306	868.484059	0.049588	2.1583E-05	-3.8975	-0.0016964	-3.8479	-0.0016748	435.2475223529239	54.37	0.74616	54.125	53.804	54.551	-0.2453					46	22	3	0	0	0	0.027866	1	5836	5836		14.664	5.8418	1	878010			37848	8838	25929	25984	43459	43459					0.044556478593108295
LAVVLTTI	8	Unmodified	_LAVVLTTI_					0	0	0			REV__ENSG00000197296|ENST00000396825|FITM2	REV__ENSG00000197296|ENST00000396825|FITM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.24822998046875	2	415.273304	828.532055	-0.36354	-0.00015097	-3.4682	-0.0014403	-3.8318	-0.0015912	415.271596555877	35.786	0.26877	35.83	35.699	35.968	0.04406					9	6	2	0	0	0	0.027866	1	2740	2740		39.021	9.18	1	43348	+		37849	28287	25930	25985	43460	43460					0.11093045050995443
LAVVLTTI	8	Unmodified	_LAVVLTTI_					0	0	0			REV__ENSG00000197296|ENST00000396825|FITM2	REV__ENSG00000197296|ENST00000396825|FITM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	415.273304	828.532055	-0.74913	-0.0003111	-10.394	-0.0043162	-11.143	-0.0046273	415.27104764233695	35.807	0.26166	35.765	35.568	35.83	-0.042458	-0.032651	-0.0019477	NaN	29.842	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81451	+		37850	28287	25930	25985							0.11093045050995443
LAVWLKSP	8	Unmodified	_LAVWLKSP_					0	0	0			REV__ENST00000315758.9_1_7:75695761-75695887:+|nuORF	REV__ENST00000315758.9_1_7:75695761-75695887:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7663269042969	2	457.278921	912.543289	-0.32606	-0.0001491	2.4757	0.0011321	2.1496	0.00098297	457.2802384248346	23.016	0.5704	23.09	22.7	23.27	0.073954					19	12	2	0	0	0	0.027866	1	826	826		31.955	5.1588	1	73898	+		37851	30271	25931	25986	43461	43461					0.08351867145131564
LAVYEILKN	9	Unmodified	_LAVYEILKN_					0	0	0		ENST00000411846.6_1_1:108815923-108880006:+|nuORF	ENST00000411846.6_1_1:108815923-108880006:+|nuORF	ENST00000411846.6_1_1:108815923-108880006:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.765380859375	2	531.813325	1061.6121	-0.8864	-0.0004714	1.9738	0.0010497	1.0874	0.00057831	531.8147813280673	40.487	0.35831	40.51	40.237	40.595	0.023006					13	9	2	0	0	0	0.024354	1	3502	3502		38.806	0	1	161240			37852	13810	25932	25987	43462	43462					0.08375486654176711
LAWAGVLAL	9	Unmodified	_LAWAGVLAL_					0	0	0		ENST00000221847.5_1_19:4237115-4237265:+|nuORF	ENST00000221847.5_1_19:4237115-4237265:+|nuORF	ENST00000221847.5_1_19:4237115-4237265:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2639465332031	2	457.278921	912.543289	1.6614	0.00075973	2.2162	0.0010134	3.8776	0.0017731	457.28085292476084	82.486	0.25751	82.376	82.252	82.509	-0.11006					7	5	2	0	0	0	0.024289	1	10248	10248		39.021	9.18	1	12722			37853	11184	25933	25988	43463	43463					0.08351867145120195
LAWAIKIV	8	Unmodified	_LAWAIKIV_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.29498291015625	2	457.297114	912.579674	-0.1327	-6.0685E-05	-4.2622	-0.0019491	-4.3949	-0.0020098	457.29508557830275	56.119	0.76651	55.963	55.554	56.321	-0.15601					62	20	4	0	0	0	0.85409	1	6232	6232		54.765	1.4132	1	6013900	+		37854	28725	25934	25989	43464	43464					0.11988744041832433
LAWALSHY	8	Unmodified	_LAWALSHY_					0	0	0		ENST00000545366.1_1_11:64055563-64055821:+|nuORF	ENST00000545366.1_1_11:64055563-64055821:+|nuORF	ENST00000545366.1_1_11:64055563-64055821:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.77734375	2	480.750527	959.486502	0.20783	9.9913E-05	-1.7639	-0.00084801	-1.5561	-0.00074809	480.74943922271393	27.859	0.12897	27.614	27.506	27.635	-0.24524					4	2	2	0	0	0	0.027866	1	1565	1565		37.028	13.986	1	11243			37855	16492	25935	25990	43465	43465					0.00513819588604747
LAWAQEHCHEA	11	Unmodified	_LAWAQEHCHEA_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	647.398193359375	2	647.785304	1293.55605	1.4632	0.00094782	-0.57327	-0.00037136	0.8899	0.00057646	647.784742927801	52.7	0.69992	52.553	52.248	52.948	-0.14723					41	17	3	0	0	0	0.024727	1	5645	5645		33.922	0	1	567630			37856	3766	25936	25991	43466	43466					-0.07898089524906027
LAWAQEHCHEA	11	Unmodified	_LAWAQEHCHEA_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	647.785304	1293.55605	0.40922	0.00026509	0.06487	4.2022E-05	0.47409	0.00030711	647.7852423808924	52.482	0.58367	52.574	52.28	52.864	0.091942	-0.013134	-0.00088682	NaN	49.536	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1029600			37857	3766	25936	25991							-0.07898089524906027
LAWAQLRN	8	Unmodified	_LAWAQLRN_					0	0	0		ENST00000396410.8_1_16:15130957-15131065:+|nuORF	ENST00000396410.8_1_16:15130957-15131065:+|nuORF	ENST00000396410.8_1_16:15130957-15131065:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3049621582031	2	486.274701	970.534849	-1.0644	-0.00051759	-0.90042	-0.00043785	-1.9648	-0.00095544	486.2739932435965	75.535	0.649	75.535	75.307	75.956	0					31	17	2	0	0	0	0.027866	1	9308	9308		49.211	14.01	1	561000			37858	13555	25937	25992	43467	43467					0.048403132284988715
LAWASIFLN	9	Unmodified	_LAWASIFLN_					0	0	0		ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.7957153320312	2	517.78711	1033.55967	-1.2934	-0.00066972	3.2216	0.0016681	1.9282	0.0009984	517.7876598404521	64.752	0.40474	64.752	64.578	64.983	0					14	10	2	0	0	0	0.024183	1	7635	7635		40.573	1.7665	1	112760			37859	13178	25938	25993	43468	43468					0.04422948311230357
LAWASIFLN	9	Unmodified	_LAWASIFLN_					0	0	0		ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.795166015625	2	517.78711	1033.55967	-1.5531	-0.00080417	1.0981	0.00056856	-0.45503	-0.00023561	518.2906976597836	65.001	0.26033	64.739	64.613	64.873	-0.2626					10	6	2	0	0	0	0.024	1	7633	7633		37.159	0.71236	1	102960			37860	13178	25938	25993	43469	43469					0.04422948311230357
LAWASIFLN	9	Unmodified	_LAWASIFLN_					0	0	0		ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.78711	1033.55967	-0.43412	-0.00022478	-0.78527	-0.0004066	-1.2194	-0.00063138	518.2870911603721	64.991	0.43907	64.736	64.542	64.981	-0.25563	-0.0065006	-0.0020136	NaN	37.159	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143440			37861	13178	25938	25993							0.04422948311230357
LAWDDRNC	8	Unmodified	_LAWDDRNC_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.71807861328125	2	496.716359	991.418164	-0.46865	-0.00023279	3.3857	0.0016817	2.9171	0.0014489	496.71801296703865	27.746	1.2646	27.827	27.392	28.657	0.081291					79	31	5	0	0	0	0.93274	1	1523	1523		47.916	0	1	4591900			37862	6023	25939	25994	43470	43470					-0.0778879305355531
LAWELLGEP	9	Unmodified	_LAWELLGEP_					0	0	0		ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.802001953125	2	514.276575	1026.5386	-0.23203	-0.00011933	1.3346	0.00068636	1.1026	0.00056703	514.2764980717235	59.398	0.98631	59.484	58.957	59.943	0.085682					49	26	3	0	0	0	0.024381	1	6766	6766		37.159	1.5408	1	753760			37863	8784	25940	25995	43471	43471					0.026389382117031346
LAWGALLVIK	10	Unmodified	_LAWGALLVIK_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.280517578125	2	542.349877	1082.6852	-0.57147	-0.00030994	-3.8936	-0.0021117	-4.4651	-0.0024216	542.3472676062547	62.363	0.23211	62.149	62.012	62.244	-0.21375					8	5	2	0	0	0	0.03519	1	7002	7002		37.159	9.2769	1	115300	+		37864	20024	25941	25996	43472	43472					0.1471666016745985
LAWLAKQL	8	Unmodified	_LAWLAKQL_					0	0	0			REV__ENST00000348520.10_2_14:104175690-104176350:+|nuORF	REV__ENST00000348520.10_2_14:104175690-104176350:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.77728271484375	2	471.792195	941.569838	-0.64747	-0.00030547	-1.2315	-0.00058101	-1.879	-0.00088648	471.7912721048577	29.113	0.43442	29.113	28.862	29.296	0					19	10	3	0	0	0	0.027866	1	1755	1755		96.048	2.0413	1	292240	+		37865	30717	25942	25997	43473	43473					0.09671556036471429
LAWLEHNQLAE	11	Unmodified	_LAWLEHNQLAE_					0	0	0		ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000173110|ENST00000309758|HSPA6	ENST00000445535.1_1_1:161576981-161578004:+|nuORF	ENST00000445535.1_1_1:161576981-161578004:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.89276123046875	3	441.894577	1322.6619	-0.28581	-0.0001263	-2.6356	-0.0011647	-2.9214	-0.001291	441.89337072722066	35.107	0.74732	34.892	34.548	35.296	-0.21555					56	18	4	0	0	0	0.99689	1	2648	2648		37.508	1.1905	1	2428600			37866	8340	25943	25998	43474	43474					0.013475695921897568
LAWLFVGY	8	Unmodified	_LAWLFVGY_					0	0	0			REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A	REV__nc|ENSG00000166822|Q8WVE7-2|TMEM170A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.27166748046875	2	484.765646	967.516739	-0.54618	-0.00026477	0.93442	0.00045298	0.38824	0.00018821	484.7658956382555	27.427	0.4402	27.427	27.286	27.726	0					18	11	2	0	0	0	0.027866	1	1485	1485		24.504	0	1	86886	+		37867	26061	25944	25999	43475	43475					0.03168178253804399
LAWLVKNV	8	Unmodified	_LAWLVKNV_					0	0	0		NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;ENSG00000102452|ENST00000251127|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF	NALCN|p.F317L|1|0.26|ENSG00000102452|chr13:101292088-101292088|A/G|missense_variant;ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7774963378906	2	471.792195	941.569838	0.40877	0.00019285	-1.8392	-0.00086771	-1.4304	-0.00067486	471.7909203757901	28.859	0.38846	28.939	28.742	29.13	0.080811					13	9	2	0	0	0	0.027866	1	1639	1639		21.702	0	1	479210			37868	2409;18020	25945	26000	43476	43476					0.0967155603646006
LAWNPSPL	8	Unmodified	_LAWNPSPL_					0	0	0		ENST00000393640.8_1_16:70432915-70433221:-|nuORF	ENST00000393640.8_1_16:70432915-70433221:-|nuORF	ENST00000393640.8_1_16:70432915-70433221:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.2850036621094	2	449.245078	896.475603	-0.30008	-0.00013481	-3.7074	-0.0016655	-4.0074	-0.0018003	449.243192798052	34.887	1.1772	34.887	34.129	35.306	0					66	30	3	0	0	0	0.027866	1	2652	2652		71.378	0	1	762810			37869	13456	25946	26001	43477	43477					0.023224172143159194
LAWNPSPL	8	Unmodified	_LAWNPSPL_					0	0	0		ENST00000393640.8_1_16:70432915-70433221:-|nuORF	ENST00000393640.8_1_16:70432915-70433221:-|nuORF	ENST00000393640.8_1_16:70432915-70433221:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.284912109375	2	449.245078	896.475603	-0.28191	-0.00012665	-3.7766	-0.0016966	-4.0585	-0.0018233	449.24322422109964	34.732	1.191	34.71	33.931	35.122	-0.021763					66	30	3	0	0	0	0.027866	1	2603	2603		60.294	1.512	1	689580			37870	13456	25946	26001	43478	43478					0.023224172143159194
LAWQNPSGW	9	Unmodified	_LAWQNPSGW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7564697265625	2	529.756341	1057.49813	-0.3156	-0.00016719	0.12844	6.8045E-05	-0.18715	-9.9145E-05	529.7562555036045	75.527	0.80785	75.254	74.891	75.699	-0.27266					44	19	3	0	0	0	0.17822	1	8926	8926		93.195	10.89	1	1090300			37871	8881	25947	26002	43479	43479					-0.028319833880459555
LAWQNPSGW	9	Unmodified	_LAWQNPSGW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.755859375	2	529.756341	1057.49813	-0.68245	-0.00036153	0.51974	0.00027534	-0.16271	-8.6199E-05	529.756447826344	75.486	0.9593	75.227	74.863	75.822	-0.25866					54	23	4	0	0	0	0.033448	1	8937	8937		138.83	32.41	1	1162600			37872	8881	25947	26002	43480	43480					-0.028319833880459555
LAWQNPSGW	9	Unmodified	_LAWQNPSGW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7559814453125	2	529.756341	1057.49813	0.21729	0.00011511	-0.35707	-0.00018916	-0.13978	-7.4052E-05	529.7559789389819	75.327	1.0721	75.152	74.774	75.846	-0.17548					57	26	4	0	0	0	0.06122	2	8903	8892;8903		124.59	36.898	1	1033600			37873	8881	25947	26002	43481;43482	43482					-0.028319833880459555
LAWRKYKVN	9	Unmodified	_LAWRKYKVN_					0	0	0			REV__ENSG00000128607|ENST00000335420|KLHDC10	REV__ENSG00000128607|ENST00000335420|KLHDC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.34326171875	2	589.345658	1176.67676	-1.1102	-0.00065427	-3.6441	-0.0021477	-4.7543	-0.0028019	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	0.94809	1	11447	11447		29.15	3.0862	1	4794700	+		37874	23001	25948	26003	43483	43483					0.09549106250847217
LAWRLGTGGL	10	Unmodified	_LAWRLGTGGL_					0	0	0			REV__ENST00000476276.5_1_16:2891872-2892025:-|nuORF	REV__ENST00000476276.5_1_16:2891872-2892025:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.8164672851562	2	522.303458	1042.59236	-0.68685	-0.00035874	1.3286	0.00069394	0.64176	0.00033519	522.3037919511754	65.212	0.73138	64.977	64.647	65.379	-0.2345					27	17	2	0	0	0	0.03519	1	7406	7406		31.53	0	1	148620	+		37875	33307	25949	26004	43484	43484					0.07277155434098859
LAWRLILS	8	Unmodified	_LAWRLILS_					0	0	0		ENST00000216237.9_1_22:41626261-41626363:+|nuORF	ENST00000216237.9_1_22:41626261-41626363:+|nuORF	ENST00000216237.9_1_22:41626261-41626363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7592468261719	2	486.30547	970.596387	-0.061287	-2.9804E-05	-0.40119	-0.0001951	-0.46248	-0.00022491	486.3054564026755	37.495	0.64494	37.495	37.158	37.803	0					38	17	3	0	0	0	0.027866	1	3047	3047		14.664	0	1	835790			37876	11158	25950	26005	43485	43485					0.10991244927799926
LAWSGVLEW	9	Unmodified	_LAWSGVLEW_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000599722.1_1_19:50334108-50335279:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25;nc|ENSG00000104960|Q86YD1-2|PTOV1	nc|ENSG00000104960|Q86YD1-2|PTOV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.79931640625	2	530.776742	1059.53893	0.20579	0.00010923	-0.037529	-1.992E-05	0.16826	8.9307E-05	530.7765588357199	95.72	1.1559	95.598	95.072	96.228	-0.12251					49	26	4	0	0	0	0.023355	1	11830	11830		65.803	0	1	490100			37877	2625;2624	25951	26006	43486	43486					0.011543579315912211
LAWSGVLEW	9	Unmodified	_LAWSGVLEW_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000599722.1_1_19:50334108-50335279:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25;nc|ENSG00000104960|Q86YD1-2|PTOV1	nc|ENSG00000104960|Q86YD1-2|PTOV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.772705078125	2	530.776742	1059.53893	-0.34968	-0.0001856	0.46003	0.00024417	0.11035	5.8569E-05	530.7768865811403	95.744	1.3773	95.589	94.878	96.256	-0.15536					41	31	2	0	0	0	0.31247	1	11805	11805		73.975	6.4811	1	473970			37878	2625;2624	25951	26006	43487	43487					0.011543579315912211
LAWVSKAEAL	10	Unmodified	_LAWVSKAEAL_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.3081665039062	2	544.310949	1086.60735	-0.12844	-6.9913E-05	-3.3097	-0.0018015	-3.4381	-0.0018714	544.3091335060176	104.84	0.82566	104.72	104.29	105.11	-0.12561					63	23	4	0	0	0	1.0616	1	13062	13062		37.812	7.4938	1	843350	+		37879	25920	25952	26007	43488	43488					0.06750602511419856
LAWYRRLL	8	Unmodified	_LAWYRRLL_					0	0	0			REV__ENST00000582740.1_1_17:56700236-56725433:-|nuORF	REV__ENST00000582740.1_1_17:56700236-56725433:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2759399414062	2	545.829643	1089.64473	-1.3194	-0.00072019	-0.33155	-0.00018097	-1.651	-0.00090115	545.8292440058938	75.707	1.2248	75.707	75.413	76.637	0					70	31	3	0	0	0	0.027866	1	9410	9410		28.254	0	1	1985100	+		37880	35544	25953	26008	43489	43489					0.10349738567697386
LAYFLHWWY	9	Unmodified	_LAYFLHWWY_					0	0	0		nc|ENSG00000249139|O95925-2|EPPIN;ENSG00000101448|ENST00000354280|EPPIN;nc|ENSG00000249139|O95925-3|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	nc|ENSG00000249139|O95925-2|EPPIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.2741394042969	3	433.550082	1297.62842	-0.33466	-0.00014509	-2.5866	-0.0011214	-2.9212	-0.0012665	433.54893281141017	54.915	0.59756	54.769	54.459	55.057	-0.14609					37	15	3	0	0	0	0.024457	1	5830	5830		37.159	0	1	243710			37881	2328	25954	26009	43490	43490					-0.008493873890529358
LAYIHKQT	8	Unmodified	_LAYIHKQT_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79229736328125	2	487.276909	972.539266	-0.90999	-0.00044342	1.0477	0.00051054	0.13776	6.7127E-05	487.2771270768035	36.378	0.54787	36.416	36.031	36.579	0.038044					30	15	3	0	0	0	0.027866	1	2808	2808		45.952	28.587	1	461810			37882	1991	25955	26010	43491	43491					0.0518977765142381
LAYIHLIEF	9	Unmodified	_LAYIHLIEF_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8158569335938	2	559.815867	1117.61718	0.050072	2.8031E-05	-0.59321	-0.00033209	-0.54314	-0.00030406	559.8155046600118	80.867	2.2167	80.629	80.287	82.504	-0.23784					212	52	6	0	0	0	0.60698	1	9833	9833		52.299	2.7631	1	31546000			37883	4735	25956	26011	43492	43492					0.06307790516802925
LAYIHLIEF	9	Unmodified	_LAYIHLIEF_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8159790039062	2	559.815867	1117.61718	0.27362	0.00015318	-0.94312	-0.00052797	-0.6695	-0.00037479	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.75282	1	9851	9851		42.474	1.6963	1	35108000			37884	4735	25956	26011	43493	43493					0.06307790516802925
LAYIHLIEF	9	Unmodified	_LAYIHLIEF_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.815673828125	2	559.815867	1117.61718	-0.4095	-0.00022924	-0.24322	-0.00013616	-0.65272	-0.0003654	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.64155	1	9838	9838		50.025	0.58299	1	31806000			37885	4735	25956	26011	43494	43494					0.06307790516802925
LAYILYFV	8	Unmodified	_LAYILYFV_					0	0	0		ENSG00000196715|ENST00000360768|VKORC1L1	ENSG00000196715|ENST00000360768|VKORC1L1	ENSG00000196715|ENST00000360768|VKORC1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8235168457031	2	501.288954	1000.56336	0.0266	1.3334E-05	2.6507	0.0013288	2.6773	0.0013421	501.29031554212634	41.836	0.99922	41.859	41.219	42.218	0.023006					61	28	4	0	0	0	0.027866	1	3788	3788		16.705	0	1	1996700			37886	9915	25957	26012	43495	43495					0.06309618085083457
LAYLLSILGN	10	Unmodified	_LAYLLSILGN_					0	0	0		ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8200073242188	2	538.82115	1075.62775	-1.3374	-0.00072062	1.1722	0.00063161	-0.1652	-8.9013E-05	538.8214479651506	64.94	0.79829	64.684	64.386	65.184	-0.25562					43	19	4	0	0	0	1.0002	1	7399	7399		45.972	6.7194	1	1920300			37887	8910	25958	26013	43496	43496					0.09295773171243127
LAYRRRWRRLT	11	Unmodified	_LAYRRRWRRLT_					0	0	0		sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3053588867188	3	516.31117	1545.91168	0.16	8.2608E-05	-1.7179	-0.00088699	-1.5579	-0.00080438	516.3097433562561	103.29	1.3781	103.16	102.54	103.92	-0.12724					81	32	4	0	0	0	1.1077	1	12863	12863		9.2118	0	1	261590			37888	37947	25959	26014	43497	43497					0.16056216779088572
LCAGRLVS	8	Unmodified	_LCAGRLVS_					0	0	0			REV__ENST00000405315.8_2_19:49425789-49425948:+|nuORF	REV__ENST00000405315.8_2_19:49425789-49425948:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1864013671875	2	409.73128	817.448008	-0.53497	-0.00021919	0.71201	0.00029173	0.17704	7.254E-05	409.73149713427756	26.906	0.42983	26.749	26.544	26.974	-0.15664					13	9	2	0	0	0	0.027866	1	1428	1428		24.203	0	1	58093	+		37889	31906	25960	26015	43498	43498					0.03198190682439872
LCAGRLVS	8	Unmodified	_LCAGRLVS_					0	0	0			REV__ENST00000405315.8_2_19:49425789-49425948:+|nuORF	REV__ENST00000405315.8_2_19:49425789-49425948:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	409.73128	817.448008	0.030369	1.2443E-05	0.12311	5.0443E-05	0.15348	6.2886E-05	409.7310296113937	26.696	0.46575	26.528	26.301	26.766	-0.16816	-0.11085	-0.00016983	NaN	24.203	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89074	+		37890	31906	25960	26015							0.03198190682439872
LCAIASVLTI	10	Unmodified	_LCAIASVLTI_					0	0	0		KCNA3|p.G468S|1|0.14|ENSG00000177272|chr1:110673408-110673408|C/T|missense_variant	KCNA3|p.G468S|1|0.14|ENSG00000177272|chr1:110673408-110673408|C/T|missense_variant	KCNA3|p.G468S|1|0.14|ENSG00000177272|chr1:110673408-110673408|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2955322265625	2	502.296453	1002.57835	-0.021452	-1.0775E-05	-3.4497	-0.0017328	-3.4712	-0.0017436	502.2944537396569	63.735	1.2718	63.483	63.156	64.428	-0.25141					80	34	4	0	0	0	0.65054	1	7441	7441		71.296	7.0884	1	3664200			37891	17784	25961	26016	43499	43499					0.07716741890772028
LCALFAAR	8	Unmodified	_LCALFAAR_					0	0	0			REV__ENST00000560750.1_1_15:44828527-44828746:-|nuORF	REV__ENST00000560750.1_1_15:44828527-44828746:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.2530517578125	2	432.741648	863.468743	-0.036604	-1.584E-05	-3.588	-0.0015527	-3.6246	-0.0015685	432.7391626890797	31.563	0.15132	31.411	31.305	31.456	-0.15231					5	3	2	0	0	0	0.027866	1	2085	2085		13.775	9.4591	1	17381	+		37892	35155	25962	26017	43500	43500					0.0315478106209639
LCALFVKW	8	Unmodified	_LCALFVKW_					0	0	0			REV__ENSG00000178690|ENST00000648945|DYNAP	REV__ENSG00000178690|ENST00000648945|DYNAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.7613830566406	2	490.275324	978.536095	0.23121	0.00011336	2.6377	0.0012932	2.8689	0.0014065	490.27633353260285	87.189	0.67336	87.154	86.941	87.614	-0.035362					25	15	3	0	0	0	0.027866	1	10901	10901		28.254	8.8943	1	92273	+		37893	27197	25963	26018	43501	43501					0.04596811273052026
LCAPPLLAPD	10	Unmodified	_LCAPPLLAPD_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2984924316406	2	505.272978	1008.5314	-0.15935	-8.0517E-05	-1.4841	-0.00074989	-1.6435	-0.00083041	505.77326841749345	62.096	0.31467	61.882	61.737	62.052	-0.21375					11	7	2	0	0	0	0.03519	1	6950	6950		30.504	23.768	1	428730	+		37894	28437	25964	26019	43502	43502					0.02747882339622265
LCASLQRQIF	10	Unmodified	_LCASLQRQIF_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	590.3115844726562	2	589.821158	1177.62776	-0.52439	-0.0003093	-2.2664	-0.0013368	-2.7908	-0.0016461	589.8194962984339	76.767	0.51275	76.515	76.228	76.741	-0.25162					21	11	3	0	0	0	0.03519	1	9153	9153		29.15	10.887	1	186290			37895	6441	25965	26020	43503	43503					0.046054498995545146
LCAVAFRSMT	10	Unmodified	_LCAVAFRSMT_					0	0	0		ENST00000339594.8_1_7:72936411-72936537:-|nuORF	ENST00000339594.8_1_7:72936411-72936537:-|nuORF	ENST00000339594.8_1_7:72936411-72936537:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.74658203125	2	549.775362	1097.53617	-0.04896	-2.6917E-05	-0.68881	-0.00037869	-0.73777	-0.00040561	549.774690982954	58.449	0.31805	58.258	58.02	58.338	-0.19018					11	7	2	0	0	0	0.03519	1	6403	6403		27.882	0	1	231600			37896	12462	25966	26021	43504	43504					-0.008695567892573308
LCAVPIANI	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))AVPIANI_	LC(1)AVPIANI		LC(110)AVPIANI		0	1	0			REV__SUPT16H|p.S878C|1|0.29|ENSG00000092201|chr14:21357224-21357224|G/C|missense_variant	REV__SUPT16H|p.S878C|1|0.29|ENSG00000092201|chr14:21357224-21357224|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.77178955078125	2	485.773145	969.531738	-0.05763	-2.7995E-05	1.0856	0.00052733	1.0279	0.00049934	485.77356581639367	67.548	0.47942	67.548	67.165	67.644	0					19	11	2	0	0	0	0.088511	1	8078	8078		114.59	22.395	1	1688400	+		37897	37590	25967	26022	43505	43505	485				0.04575302059504338
LCAVPIANI	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))AVPIANI_	LC(1)AVPIANI		LC(100)AVPIANI		0	1	0			REV__SUPT16H|p.S878C|1|0.29|ENSG00000092201|chr14:21357224-21357224|G/C|missense_variant	REV__SUPT16H|p.S878C|1|0.29|ENSG00000092201|chr14:21357224-21357224|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.77166748046875	2	485.773145	969.531738	-0.24181	-0.00011747	-0.59965	-0.00029129	-0.84146	-0.00040876	485.7742412230893	67.512	1.3085	67.536	66.855	68.163	0.023903					72	32	4	0	0	0	0.14199	1	8001	8001		101.21	12.569	1	1769400	+		37898	37590	25967	26022	43506	43506	485				0.04575302059504338
LCAVPIANI	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))AVPIANI_	LC(1)AVPIANI		LC(58)AVPIANI		0	1	0			REV__SUPT16H|p.S878C|1|0.29|ENSG00000092201|chr14:21357224-21357224|G/C|missense_variant	REV__SUPT16H|p.S878C|1|0.29|ENSG00000092201|chr14:21357224-21357224|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2661437988281	2	485.773145	969.531738	-0.24181	-0.00011747	-0.59965	-0.00029129	-0.84146	-0.00040876	485.7742412230893	67.512	1.3085	67.536	66.855	68.163	0.023903					72	32	4	0	0	0	0.023775	1	8005	8005		57.811	7.7867	1	1769400	+		37899	37590	25967	26022	43507	43507	485				0.04575302059504338
LCDKGPDCSL	10	Unmodified	_LCDKGPDCSL_					0	0	0		ENSG00000084453|ENST00000683939|SLCO1A2;nc|ENSG00000084453|P46721-2|SLCO1A2;ENST00000463718.5_1_12:21428225-21457481:-|nuORF	ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2979125976562	2	525.73336	1049.45217	-0.048776	-2.5643E-05	0.21698	0.00011407	0.1682	8.8428E-05	525.7332756394493	54.759	0.52275	54.857	54.626	55.148	0.098015					31	14	3	0	0	0	0.03519	1	5940	5940		62.107	14.45	1	381220			37900	1769	25968	26023	43508	43508					-0.07058132676820605
LCEALKVHGWS	11	Unmodified	_LCEALKVHGWS_					0	0	0			REV__CAMTA1|p.R1154W|1|0.21|ENSG00000171735|chr1:7737372-7737372|C/T|missense_variant	REV__CAMTA1|p.R1154W|1|0.21|ENSG00000171735|chr1:7737372-7737372|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	621.7601318359375	2	621.818615	1241.62268	-1.0619	-0.00066029	-3.8799	-0.0024126	-4.9418	-0.0030729	622.3182826804612	70.992	0.22109	70.734	70.607	70.828	-0.25713					5	4	2	0	0	0	0.024799	1	8273	8273		66.962	27.709	1	52831	+		37901	19243	25970	26024	43509	43509					0.011531460369951674
LCEEQVIY	8	Unmodified	_LCEEQVIY_					0	0	0		ENST00000478344.6_1_9:140240296-140248823:-|nuORF;ENST00000491734.6_1_9:140201404-140249090:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF;ENSG00000187609|ENST00000340951|EXD3;nc|ENSG00000187609|Q8N9H8-3|EXD3	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	498.7406311035156	2	498.738968	995.463383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.377	1	29.227	28.727	29.727	-0.14952								0	0	0	0.36617	1	1771	1771		71.378	2.8932	1				37902	15143	25971	26025	43510	43510					-0.034529873110273
LCEHQPEVV	9	Unmodified	_LCEHQPEVV_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.2554931640625	2	527.255317	1052.49608	-0.55293	-0.00029153	1.7102	0.00090171	1.1573	0.00061018	527.256038826505	81.67	0.72056	81.528	81.233	81.954	-0.14249					37	16	3	0	0	0	0.72875	1	9826	9826		44.117	3.3386	1	587230	+		37903	25256	25972	26026	43511	43511					-0.02806780188166158
LCEILLSTFG	10	Unmodified	_LCEILLSTFG_					0	0	0			REV__ENST00000559655.1_1_15:35141948-35142251:-|nuORF	REV__ENST00000559655.1_1_15:35141948-35142251:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.2591552734375	2	548.291368	1094.56818	-0.46913	-0.00025722	-2.894	-0.0015868	-3.3631	-0.001844	548.2894135757721	24.828	0.42744	24.613	24.336	24.764	-0.2151					15	9	2	0	0	0	0.03519	1	1141	1141		15.642	3.435	1	75844	+		37904	35122	25973	26027	43512	43512					0.024681341655195865
LCEKRKRRRER	11	Unmodified	_LCEKRKRRRER_					0	0	0		ENST00000280571.9_1_12:123920858-123920954:-|nuORF	ENST00000280571.9_1_12:123920858-123920954:-|nuORF	ENST00000280571.9_1_12:123920858-123920954:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.63470458984375	3	510.635437	1528.88448	0.11702	5.9755E-05	-2.6606	-0.0013586	-2.5436	-0.0012989	510.6339323208207	102.13	1.4065	101.96	101.05	102.46	-0.17178					85	32	3	0	0	0	1.0811	1	12655	12655		16.53	7.7305	1	181380			37905	11717	25974	26028	43513	43513					0.14119365176406973
LCFFAAWMA	9	Unmodified	_LCFFAAWMA_					0	0	0		nc|ENSG00000099797|Q9NZ01-2|TECR	nc|ENSG00000099797|Q9NZ01-2|TECR	nc|ENSG00000099797|Q9NZ01-2|TECR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2418212890625	2	530.243166	1058.47178	-0.19805	-0.00010502	-3.9258	-0.0020816	-4.1239	-0.0021866	530.2408548290116	110.65	0.59898	110.64	110.58	111.18	-0.011299					45	22	3	0	0	0	1.0281	1	13985	13985		14.664	0.52697	1	44720			37906	18121	25975	26029	43514	43514					-0.05511711875396941
LCFGFIFTG	9	Unmodified	_LCFGFIFTG_					0	0	0		nc|ENSG00000153094|O43521-17|BCL2L11	nc|ENSG00000153094|O43521-17|BCL2L11	nc|ENSG00000153094|O43521-17|BCL2L11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7622375488281	2	502.749139	1003.48372	0.44323	0.00022283	-3.9315	-0.0019765	-3.4882	-0.0017537	503.2491080261953	63.431	0.25893	63.431	63.336	63.595	0					7	6	2	0	0	0	0.024386	1	7409	7409		33.516	3.0119	1	109340			37907	18390	25976	26030	43515	43515					-0.01787771860540488
LCGALEPALP	10	Unmodified	_LCGALEPALP_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.26806640625	2	492.265153	982.515753	0.24349	0.00011986	3.871	0.0019055	4.1145	0.0020254	492.2668865940757	20.963	0.54086	21.032	20.808	21.349	0.068903					24	10	3	0	0	0	1.1056	1	565	565		31.955	4.9075	1	116320			37908	2635	25977	26031	43516	43516					0.023795958225719005
LCGALEPALP	10	Unmodified	_LCGALEPALP_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.265153	982.515753	-0.77265	-0.00038035	5.0929	0.0025071	4.3203	0.0021267	492.26735490304117	21.008	0.92594	21.008	20.704	21.63	0	-0.016933	0.00085173	NaN	31.955	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97898			37909	2635	25977	26031							0.023795958225719005
LCGALEPALP	10	Unmodified	_LCGALEPALP_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.265153	982.515753	-0.4268	-0.0002101	4.3253	0.0021292	3.8985	0.0019191	492.2671261034252	21.125	0.58933	21.035	20.814	21.403	-0.090092	0.0096597	9.5978E-05	NaN	31.955	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115270			37910	2635	25977	26031							0.023795958225719005
LCGEGHDVKN	10	Unmodified	_LCGEGHDVKN_					0	0	0			REV__nc|ENSG00000285077|Q3KRB8|ARHGAP11B	REV__nc|ENSG00000285077|Q3KRB8|ARHGAP11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2470092773438	2	536.248023	1070.48149	0.3431	0.00018399	-2.6468	-0.0014193	-2.3037	-0.0012353	536.2463994514429	70.461	2.043	70.168	69.714	71.757	-0.29292					98	55	3	0	0	0	1.1266	1	8518	8518		29.17	2.374	1	4878300	+		37911	28491	25978	26032	43517	43517					-0.05092852336292708
LCGRGPQPCE	10	Unmodified	_LCGRGPQPCE_					0	0	0			REV__ENST00000495930.1_1_13:113527819-113530362:+|nuORF	REV__ENST00000495930.1_1_13:113527819-113530362:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2410888671875	2	530.239144	1058.46373	-0.19805	-0.00010502	3.6608	0.0019411	3.4628	0.0018361	530.2408548290116	110.65	0.59898	110.64	110.58	111.18	-0.011299					45	22	3	0	0	0	1.1217	1	13977	13977		21.96	2.5999	1	44720	+		37912	33812	25979	26033	43518	43518					-0.06315890862811102
LCGSSGPLPVP	11	Unmodified	_LCGSSGPLPVP_					0	0	0		nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000143847|O75335|PPFIA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.28515625	2	513.76806	1025.52157	0.66887	0.00034364	2.7255	0.0014003	3.3944	0.0017439	513.7692375837457	55.409	0.18153	55.409	55.319	55.5	0					8	4	3	0	0	0	0.024774	1	6122	6122		55.504	28.708	1	71606			37913	18348	25980	26034	43519	43519					0.00982694334243206
LCHEQCGPGHT	11	Unmodified	_LCHEQCGPGHT_					0	0	0			REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF	REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	591.2437744140625	2	591.244957	1180.47536	-2.0383	-0.0012051	-0.39118	-0.00023128	-2.4294	-0.0014364	591.2446688258151	35.36	1.144	35.36	35.018	36.162	0					86	30	5	0	0	0	1.018	1	2737	2737		32.812	0	1	7658900	+		37914	27977	25981	26035	43520	43520					-0.10765693839471169
LCHEQCGPGHT	11	Unmodified	_LCHEQCGPGHT_					0	0	0			REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF	REV__ENST00000469390.5_1_1:156877911-156884587:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	591.2438354492188	2	591.244957	1180.47536	-1.8939	-0.0011197	-0.51029	-0.0003017	-2.4042	-0.0014214	591.2446518003549	35.213	1.0566	35.192	34.828	35.884	-0.021763					83	27	5	0	0	0	1.018	1	2684	2684		32.812	0.85756	1	7223300	+		37915	27977	25981	26035	43521	43521					-0.10765693839471169
LCHLAAAAPPI	11	Unmodified	_LCHLAAAAPPI_					0	0	0			REV__ENST00000375150.6_1_6:32116492-32119883:-|nuORF	REV__ENST00000375150.6_1_6:32116492-32119883:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3255004882812	2	538.799694	1075.58484	-0.40771	-0.00021967	-1.088	-0.0005862	-1.4957	-0.00080588	538.7989069096357	101.27	0.68968	101.26	100.98	101.67	-0.0054474					28	15	2	0	0	0	0.02474	1	12848	12848		24.203	10.066	1	195230	+		37916	29304	25982	26036	43522	43522					0.050066798421539715
LCHPLGQKFF	10	Unmodified	_LCHPLGQKFF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.7957153320312	2	595.312969	1188.61138	-0.78953	-0.00047002	0.057448	3.42E-05	-0.73208	-0.00043582	595.813893955344	61.48	1.0491	61.223	61.008	62.058	-0.25725					41	25	3	0	0	0	0.03519	1	6837	6837		24.203	0	1	345930			37917	10245	25983	26037	43523	43523					0.02462368733472431
LCHQLQTV	8	Unmodified	_LCHQLQTV_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2742004394531	2	471.247295	940.480036	0.67091	0.00031616	-4.1579	-0.0019594	-3.487	-0.0016432	471.2451743303654	42.709	0.68229	42.735	42.323	43.005	0.026012					27	18	2	0	0	0	0.027866	1	3827	3827		30.504	0	1	487350			37918	3729	25984	26038	43524	43524					0.00741558365587025
LCHQLQTV	8	Unmodified	_LCHQLQTV_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.247295	940.480036	0.60616	0.00028565	-4.0139	-0.0018916	-3.4078	-0.0016059	471.2451877277711	42.587	0.50389	42.587	42.355	42.859	0	-0.086065	-4.3663E-05	NaN	30.504	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420530			37919	3729	25984	26038							0.00741558365587025
LCHQLQTV	8	Unmodified	_LCHQLQTV_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.247295	940.480036	0.40049	0.00018873	-3.7309	-0.0017582	-3.3304	-0.0015694	471.24528364248323	42.837	0.61196	42.698	42.379	42.991	-0.13929	0.02479	0.00022312	NaN	30.504	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425750			37920	3729	25984	26038							0.00741558365587025
LCHYILNL	8	Unmodified	_LCHYILNL_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7823791503906	2	494.767863	987.521173	-0.68299	-0.00033792	-1.2745	-0.00063057	-1.9575	-0.00096849	494.76639663102134	46.556	0.42785	46.403	46.309	46.736	-0.15301					16	11	2	0	0	0	0.027866	1	4619	4619		35.201	0	1	167850			37921	202	25985	26039	43525	43525					0.026913194050507627
LCIPFPRGED	10	Unmodified	_LCIPFPRGED_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.7825927734375	2	573.784241	1145.55393	-0.36545	-0.00020969	-2.7904	-0.0016011	-3.1559	-0.0018108	573.7827277938131	64.323	3.8502	64.131	62.696	66.546	-0.19243					217	96	4	0	0	0	0.91051	1	7356	7356		53.351	3.9099	1	6137800			37922	790	25986	26040	43526	43526					-0.013025182627643517
LCIQPFIGEG	10	Unmodified	_LCIQPFIGEG_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7916870117188	2	538.775885	1075.53722	-0.2941	-0.00015845	2.7888	0.0015025	2.4947	0.0013441	539.2783731698582	59.237	0.24159	58.995	58.895	59.137	-0.24165					6	5	2	0	0	0	0.03519	1	6515	6515		40.778	2.9666	1	126220	+		37923	25129	25987	26041	43527	43527					0.002469808513069438
LCIRQGNI	8	Unmodified	_LCIRQGNI_					0	0	0		ENST00000601286.5_1_13:51463800-51479022:-|nuORF	ENST00000601286.5_1_13:51463800-51479022:-|nuORF	ENST00000601286.5_1_13:51463800-51479022:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7456970214844	2	458.755287	915.496021	-0.34795	-0.00015962	0.50436	0.00023138	0.15641	7.1753E-05	458.755422533873	26.244	0.36547	26.221	25.998	26.364	-0.023088					19	8	3	0	0	0	0.027866	1	1328	1328		26.796	9.4311	1	333300			37924	17511	25988	26042	43528	43528					0.03489264602490039
LCISFLMIDV	10	Unmodified	_LCISFLMIDV_					0	0	0			REV__ENST00000434992.1_2_X:57704441-57704846:-|nuORF	REV__ENST00000434992.1_2_X:57704441-57704846:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2988891601562	2	577.303421	1152.59229	0.36556	0.00021104	1.7031	0.00098318	2.0686	0.0011942	577.3049106047871	102.34	0.46329	102.21	102.03	102.49	-0.12931					18	10	2	0	0	0	0.79525	1	12715	12715		60.972	0.85368	1	68548	+		37925	32432	25989	26043	43529	43529					0.022096513275528196
LCITPQELLS	10	Unmodified	_LCITPQELLS_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7827758789062	2	558.8021	1115.58965	-0.4304	-0.00024051	2.0798	0.0011622	1.6494	0.00092168	558.8029552096505	31.187	0.36038	31.002	30.702	31.062	-0.18503					15	8	2	0	0	0	0.03519	1	2038	2038		47.657	4.7931	1	369280			37926	6450	25990	26044	43530	43530					0.03647519194259985
LCITPQELLS	10	Unmodified	_LCITPQELLS_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.8021	1115.58965	-1.1036	-0.00061668	3.2262	0.0018028	2.1227	0.0011861	558.8032991822765	30.719	0.32773	30.719	30.592	30.92	0	-0.010842	0.00036511	NaN	39.253	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69994			37927	6450	25990	26044							0.03647519194259985
LCITPQELLS	10	Unmodified	_LCITPQELLS_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.8021	1115.58965	-0.69327	-0.0003874	3.269	0.0018267	2.5757	0.0014393	558.8039583020446	30.687	0.37313	30.696	30.538	30.911	0.0086708	-0.033739	0.0004129	NaN	39.253	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81626			37928	6450	25990	26044							0.03647519194259985
LCITPQELLS	10	Unmodified	_LCITPQELLS_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.8021	1115.58965	-0.69563	-0.00038872	2.7357	0.0015287	2.04	0.00114	558.8034187667967	30.427	0.41266	30.502	30.254	30.667	0.074316	-0.22812	-0.00018315	NaN	39.253	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84829			37929	6450	25990	26044							0.03647519194259985
LCKIMLFF	8	Unmodified	_LCKIMLFF_					0	0	0		ENSG00000229549|ENST00000287721|TSPY8;nc|ENSG00000258992|Q01534-2|TSPY1;ENSG00000258992|ENST00000451548|TSPY1;ENSG00000236424|ENST00000428845|TSPY10;ENSG00000228927|ENST00000457222|TSPY3;ENSG00000168757|ENST00000320701|TSPY2;ENSG00000238074|ENST00000440215|TSPY9;ENSG00000233803|ENST00000426950|TSPY4	ENSG00000229549|ENST00000287721|TSPY8	ENSG00000229549|ENST00000287721|TSPY8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7960510253906	2	507.779385	1013.54422	0.078463	3.9842E-05	3.4213	0.0017373	3.4998	0.0017771	507.78259141218683	21.31	0.19728	21.12	20.98	21.177	-0.19072					5	3	2	0	0	0	0.027866	1	649	649		35.201	16.939	1	7971.9			37930	10682	25991	26045	43531	43531					0.03798622198166868
LCKKLFII	8	Unmodified	_LCKKLFII_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265625	2	489.314449	976.614345	-1.1815	-0.00057815	-2.1005	-0.0010278	-3.2821	-0.001606	489.312405035978	55.883	0.5083	55.727	55.386	55.894	-0.15656					18	13	3	0	0	0	0.027866	1	5992	5992		54.765	0	1	221110	+		37931	24021	25992	26046	43532	43532					0.1251024385829851
LCKKQSVKT	9	Unmodified	_LCKKQSVKT_					0	0	0		ENST00000356577.8_2_21:34948883-34949093:+|nuORF	ENST00000356577.8_2_21:34948883-34949093:+|nuORF	ENST00000356577.8_2_21:34948883-34949093:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.783203125	2	517.804977	1033.5954	-0.27758	-0.00014373	2.3746	0.0012296	2.0971	0.0010859	517.8062032383798	42.455	0.87176	42.225	41.997	42.869	-0.23029					31	22	2	0	0	0	0.024457	1	3774	3774		37.159	21.523	1	303240			37932	12673	25993	26047	43533	43533					0.07994662496594174
LCKKQSVKT	9	Unmodified	_LCKKQSVKT_					0	0	0		ENST00000356577.8_2_21:34948883-34949093:+|nuORF	ENST00000356577.8_2_21:34948883-34949093:+|nuORF	ENST00000356577.8_2_21:34948883-34949093:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.804977	1033.5954	-0.26526	-0.00013735	3.0216	0.0015646	2.7563	0.0014272	517.8064487726776	42.116	1.4585	41.993	41.346	42.805	-0.12299	-0.12991	0.00039104	NaN	32.812	58	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213100			37933	12673	25993	26047							0.07994662496594174
LCKPEVIAQLE	11	Unmodified	_LCKPEVIAQLE_					0	0	0		ENST00000482436.1_1_7:55980329-55991886:+|nuORF;ENSG00000178665|ENST00000429591|ZNF713	ENST00000482436.1_1_7:55980329-55991886:+|nuORF	ENST00000482436.1_1_7:55980329-55991886:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.8985290527344	3	414.89693	1241.66896	0.31977	0.00013267	2.8912	0.0011995	3.2109	0.0013322	414.89822568759973	25.073	1.2709	25.154	24.779	26.049	0.08009					99	29	6	0	0	0	0.75915	1	1090	1090		60.167	6.5701	1	11103000			37934	8828	25994	26048	43534	43534					0.05779166148386139
LCLAHHVF	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LAHHVF_	LC(1)LAHHVF		LC(44)LAHHVF		0	1	0			REV__ENST00000551219.5_1_12:71032966-71033309:-|nuORF	REV__ENST00000551219.5_1_12:71032966-71033309:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7599792480469	2	498.75783	995.501106	-0.090849	-4.5312E-05	2.8612	0.0014271	2.7704	0.0013817	498.7591878521247	34.478	1.1304	34.254	33.923	35.053	-0.22412					75	28	4	0	0	0	0.9599	1	2548	2548		43.626	6.4669	1	4200700	+		37935	24893	25995	26049	43535	43535	327				0.0031756846511825643
LCLAIGRPE	9	Unmodified	_LCLAIGRPE_					0	0	0		nc|ENSG00000183715|Q14982-3|OPCML;ENST00000529038.5_1_11:132290089-133402241:-|nuORF;ENSG00000183715|ENST00000524381|OPCML;nc|ENSG00000183715|Q14982|OPCML;nc|ENSG00000183715|Q14982-4|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	MSMS	OPSCC_40_ClassI_Rep-3	6	486.2677917480469	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.454	1	98.289	97.789	98.789	-0.1652								0	0	0	0.65896	1	12181	12181		29.15	2.4566	1				37936	9264	25996	26050	43536	43536					0.0405441791673411
LCLALIIMKI	10	Oxidation (M)	_LCLALIIM(Oxidation (M))KI_		LCLALIIM(1)KI		LCLALIIM(48)KI	0	0	1		nc|ENSG00000142512|Q96LC7-8|SIGLEC10;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10;ENST00000357375.4_1_19:51914355-51919928:-|nuORF	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.8530883789062	2	573.853081	1145.69161	-0.13364	-7.6688E-05	0.09736	5.587E-05	-0.036276	-2.0817E-05	573.853028695282	64.073	0.87115	63.845	63.549	64.42	-0.22773					61	21	4	0	0	0	0.9856	1	7280	7280		47.916	11.469	1	3417800			37937	5565	25997	26051	43537	43537		238			0.12459094012319838
LCLASHPVQ	9	Unmodified	_LCLASHPVQ_					0	0	0		SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|23|2|sense	SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|23|2|sense	SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|23|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2703552246094	2	484.25512	966.495686	-0.67458	-0.00032667	1.0238	0.0004958	0.34925	0.00016913	484.2554498319318	30.855	0.9883	30.929	30.544	31.532	0.074316					53	23	3	0	0	0	0.023817	1	2004	2004		42.396	1.618	1	456330			37938	38010	25998	26052	43538	43538					0.011098448826373897
LCLASHPVQ	9	Unmodified	_LCLASHPVQ_					0	0	0		SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|23|2|sense	SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|23|2|sense	SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|23|2|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.25512	966.495686	-0.13394	-6.486E-05	1.3228	0.00064056	1.1888	0.0005757	484.2556600402452	31.324	0.42013	31.083	30.875	31.295	-0.24109	0.052546	0.00049329	NaN	42.396	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69071			37939	38010	25998	26052							0.011098448826373897
LCLFLGLLLL	10	Unmodified	_LCLFLGLLLL_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3245239257812	2	559.356314	1116.69807	-0.096414	-5.393E-05	2.8443	0.001591	2.7479	0.001537	559.357770036569	68.223	1.1847	68.223	67.792	68.977	0					51	30	2	0	0	0	0.03519	1	8134	8134		26.796	0	1	197290			37940	9170	25999	26053	43539	43539					0.1443935523534492
LCLGAQHYF	9	Unmodified	_LCLGAQHYF_					0	0	0			REV__ENST00000356853.9_1_2:220022944-220025484:-|nuORF	REV__ENST00000356853.9_1_2:220022944-220025484:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7960815429688	2	526.25512	1050.49569	-0.71696	-0.0003773	2.899	0.0015256	2.1821	0.0011483	526.2564852599614	51.856	0.70538	51.856	51.568	52.273	0					40	19	3	0	0	0	0.024443	1	5578	5578		35.201	2.3883	1	930530	+		37941	30803	26000	26054	43540	43540					-0.027541551173726475
LCLHCLLSP	9	Unmodified	_LCLHCLLSP_					0	0	0		ENST00000433510.2_1_17:46713503-46713704:-|nuORF	ENST00000433510.2_1_17:46713503-46713704:-|nuORF	ENST00000433510.2_1_17:46713503-46713704:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77154541015625	2	499.761723	997.508894	-0.7968	-0.00039821	3.6624	0.0018303	2.8656	0.0014321	499.7636241040638	28.375	0.52307	28.223	27.961	28.484	-0.15195					21	12	2	0	0	0	0.024535	1	1642	1642		12.207	0	1	120060			37942	14227	26001	26055	43541	43541					0.010039596703677489
LCLHEHLA	8	Unmodified	_LCLHEHLA_					0	0	0			REV__nc|ENSG00000167705|Q96NA2-2|RILP	REV__nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7560729980469	2	468.242012	934.469472	0.31984	0.00014976	2.5377	0.0011883	2.8576	0.001338	468.24407382542165	95.015	2.3108	95.018	93.754	96.065	0.0033798					99	54	3	0	0	0	0.027866	1	11969	11969		28.254	0	1	154250	+		37943	26184	26002	26056	43542	43542					-0.000384242888458175
LCLHTKLLAPV	11	Unmodified	_LCLHTKLLAPV_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3656616210938	2	604.365201	1206.71585	0.12428	7.5109E-05	2.3484	0.0014193	2.4727	0.0014944	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.0499	1	12840	12840		21.96	1.013	1	4482300			37944	1097	26003	26057	43543	43543					0.12076070490184065
LCLIYTLN	8	Unmodified	_LCLIYTLN_					0	0	0		ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-4|PTCHD4	ENSG00000244694|ENST00000339488|PTCHD4	ENSG00000244694|ENST00000339488|PTCHD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.9613952636719	2	476.762246	951.50994	0.40534	0.00019325	-1.0671	-0.00050876	-0.66178	-0.00031551	476.7617258401526	63.104	1.0274	63.104	62.531	63.558	0					77	26	4	0	0	0	0.027866	1	7429	7429		15.642	0	1	880750			37945	10825	26004	26058	43544	43544					0.0322449731091865
LCLKHGEQL	9	Unmodified	_LCLKHGEQL_					0	0	0			REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.783935546875	2	520.781502	1039.54845	0.7045	0.00036689	4.3964	0.0022896	5.1009	0.0026565	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	0.94809	2	13270	13270;13277		29.15	1.2673	1	3641400	+		37946	26183	26005	26059	43545;43546	43545					0.030258029454444113
LCLLHLYT	8	Unmodified	_LCLLHLYT_					0	0	0			REV__ENST00000298125.6_1_13:52334171-52334492:+|nuORF	REV__ENST00000298125.6_1_13:52334171-52334492:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.293212890625	2	488.270238	974.525924	0.46834	0.00022867	-4.3513	-0.0021246	-3.883	-0.0018959	488.26823102789433	89.861	1.4638	89.722	88.986	90.45	-0.13824					68	34	3	0	0	0	0.027866	1	10978	10978		14.664	6.4328	1	441900	+		37947	30021	26006	26060	43547	43547					0.03764203547814304
LCLPGDIVPA	10	Unmodified	_LCLPGDIVPA_					0	0	0		nc|ENSG00000288550|Q8NAC3-4|IL17RC;ENST00000483582.5_1_3:9958999-9974679:+|nuORF;nc|ENSG00000288550|Q8NAC3-6|IL17RC;nc|ENSG00000288550|Q8NAC3-3|IL17RC;ENSG00000163702|ENST00000403601|IL17RC;nc|ENSG00000288550|Q8NAC3|IL17RC;nc|ENSG00000288550|Q8NAC3-7|IL17RC;nc|ENSG00000288550|Q8NAC3-8|IL17RC;nc|ENSG00000288550|Q8NAC3-5|IL17RC;ENST00000451271.5_1_3:9958923-9975274:+|nuORF	nc|ENSG00000288550|Q8NAC3-4|IL17RC;nc|ENSG00000288550|Q8NAC3-7|IL17RC	nc|ENSG00000288550|Q8NAC3-7|IL17RC	MSMS	OPSCC_40_ClassI_Rep-1	4	499.2740173339844	2	499.272978	996.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.168	1	72.891	72.391	73.391	-0.2769								0	0	0	0.7592	1	8585	8585		47.916	3.7988	1				37948	7133;18818	26007	26061	43548	43548					0.03299882339638316
LCLPLLVFY	9	Unmodified	_LCLPLLVFY_					0	0	0			REV__ENSG00000164930|ENST00000358755|FZD6	REV__ENSG00000164930|ENST00000358755|FZD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.2894897460938	2	540.811739	1079.60893	-0.079845	-4.3181E-05	3.4602	0.0018713	3.3803	0.0018281	540.8133795625079	53.059	0.5912	52.932	52.552	53.143	-0.12705					21	14	2	0	0	0	0.024541	1	5574	5574		21.702	0	1	349700	+		37949	25818	26008	26062	43549	43549					0.07230520275834351
LCLPSASYEG	10	Unmodified	_LCLPSASYEG_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2984619140625	2	520.241875	1038.4692	-0.39602	-0.00020603	4.1888	0.0021792	3.7927	0.0019731	520.2442015762941	60.418	0.48856	60.217	59.979	60.467	-0.20164					17	11	2	0	0	0	0.03519	1	6727	6727		29.15	1.2673	1	176000	+		37950	28666	26009	26063	43550	43550					-0.048498887993673634
LCLQQPLS	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LQQPLS_	LC(1)LQQPLS		LC(74)LQQPLS		0	1	0		ENST00000291041.5_1_16:67961537-67962017:+|nuORF	ENST00000291041.5_1_16:67961537-67962017:+|nuORF	ENST00000291041.5_1_16:67961537-67962017:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7354736328125	2	479.754953	957.495352	1.7307	0.00083031	-3.7985	-0.0018223	-2.0678	-0.00099202	479.75300266125464	59.702	0.321	59.702	59.559	59.88	0					16	8	3	0	0	0	0.027866	1	6807	6807		73.975	10.996	1	363430			37951	11791	26010	26064	43551	43551	161				0.01490425162774045
LCLRVESGL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LRVESGL_	LC(1)LRVESGL		LC(63)LRVESGL		0	1	0			REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.7845458984375	2	523.786784	1045.55902	-0.77048	-0.00040357	-0.49493	-0.00025924	-1.2654	-0.0006628	523.7865267922008	61.773	1.0564	61.596	61.287	62.343	-0.17781					46	26	2	0	0	0	0.43973	1	6932	6932		63.306	6.5852	1	1136500	+		37952	37612	26011	26065	43552	43552	486				0.03805785599865885
LCLRVESGL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LRVESGL_					0	1	0			REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.786784	1045.55902	-0.35173	-0.00018423	-0.98908	-0.00051807	-1.3408	-0.0007023	523.7861416916772	61.913	0.91095	61.699	61.334	62.244	-0.21375	0.045026	-0.00014761	NaN	63.306	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1224900	+		37953	37612	26011	26065			486				0.03805785599865885
LCLRVESGL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LRVESGL_					0	1	0			REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	523.786784	1045.55902	-0.77048	-0.00040357	-0.49493	-0.00025924	-1.2654	-0.0006628	523.7865267922008	61.773	1.0564	61.596	61.287	62.343	-0.17781	-0.058534	0.00037005	NaN	63.306	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1136500	+		37954	37612	26011	26065			486				0.03805785599865885
LCLRVESGL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LRVESGL_					0	1	0			REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	REV__SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|17|2|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.786784	1045.55902	-0.035831	-1.8768E-05	-1.357	-0.00071076	-1.3928	-0.00072953	523.7860378320072	61.925	0.94751	61.668	61.342	62.29	-0.25725	0.013507	-0.00053299	NaN	63.306	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	993940	+		37955	37612	26011	26065			486				0.03805785599865885
LCLVALFSP	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LVALFSP_	LC(1)LVALFSP		LC(83)LVALFSP		0	1	0		ENST00000377298.8_1_1:9790356-9790569:-|nuORF	ENST00000377298.8_1_1:9790356-9790569:-|nuORF	ENST00000377298.8_1_1:9790356-9790569:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.28533935546875	2	510.283346	1018.55214	-0.49756	-0.0002539	3.8121	0.0019452	3.3145	0.0016913	510.28515537696944	57.042	0.73384	57.042	56.571	57.305	0					79	20	6	0	0	0	0.24299	1	6404	6404		83.287	11.909	1	5857600			37956	13201	26012	26066	43553	43553	179				0.043604727192928294
LCLVRSSGK	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LVRSSGK_	LC(1)LVRSSGK		LC(88)LVRSSGK		0	1	0			REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.28533935546875	2	510.286951	1018.55935	-0.38288	-0.00019538	-2.9094	-0.0014846	-3.2923	-0.00168	510.2850619104917	56.874	0.84923	56.969	56.432	57.281	0.095306					84	22	6	0	0	0	0.20967	1	6300	6300		87.754	8.3033	1	7085500	+		37957	36696	26013	26067	43554	43554	474				0.05081205319743276
LCLWFVAVHN	10	Unmodified	_LCLWFVAVHN_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2431945800781	3	401.211071	1200.61138	0.68699	0.00027563	-0.68729	-0.00027575	-0.00029997	-1.2035E-07	401.21062127718943	20.173	0.92128	20.173	19.735	20.656	0					41	18	3	0	0	0	0.03519	1	452	452		16.007	0.67366	1	145670	+		37958	23649	26014	26068	43555	43555					0.01910368733501855
LCLWFVAVHN	10	Unmodified	_LCLWFVAVHN_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	401.211071	1200.61138	0.14645	5.8755E-05	-0.21876	-8.7769E-05	-0.072316	-2.9014E-05	401.2108379691311	20.493	0.86663	20.389	20.03	20.897	-0.10477	0.027489	0.0028731	NaN	21.686	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139110	+		37959	23649	26014	26068							0.01910368733501855
LCLWFVAVHN	10	Unmodified	_LCLWFVAVHN_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	401.211071	1200.61138	3.9372	0.0015797	-3.7832	-0.0015179	0.15399	6.1783E-05	401.2094800480412	20.32	0.78849	20.389	20.069	20.858	0.068901	0.028002	-0.0014173	NaN	21.686	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170570	+		37960	23649	26014	26068							0.01910368733501855
LCLWFVAVHN	10	Unmodified	_LCLWFVAVHN_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	401.211071	1200.61138	-0.56252	-0.00022569	-4.4446	-0.0017832	-5.0071	-0.0020089	401.2089490703941	20.717	0.74204	20.494	20.02	20.762	-0.22344	0.13277	-0.0022133	NaN	21.686	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11591	+		37961	23649	26014	26068							0.01910368733501855
LCLWPQGLL	9	Unmodified	_LCLWPQGLL_					0	0	0			REV__ENSG00000010282|ENST00000441594|HHATL	REV__ENSG00000010282|ENST00000441594|HHATL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.8162841796875	2	521.791338	1041.56812	-0.38826	-0.00020259	-3.3448	-0.0017453	-3.7331	-0.0019479	521.7894354702967	65.351	0.61176	65.1	64.783	65.395	-0.25112					21	14	2	0	0	0	0.024466	1	7410	7410		33.516	0	1	113600	+		37962	19901	26015	26069	43556	43556					0.04900178956199852
LCLWPQGLL	9	Unmodified	_LCLWPQGLL_					0	0	0			REV__ENSG00000010282|ENST00000441594|HHATL	REV__ENSG00000010282|ENST00000441594|HHATL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.791338	1041.56812	-0.53884	-0.00028116	-6.0121	-0.0031371	-6.5509	-0.0034182	521.7881596974739	65.372	0.64087	65.372	65.158	65.799	0	0.087071	-0.00051923	NaN	31.955	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477250	+		37963	19901	26015	26069							0.04900178956199852
LCLWPQGLL	9	Unmodified	_LCLWPQGLL_					0	0	0			REV__ENSG00000010282|ENST00000441594|HHATL	REV__ENSG00000010282|ENST00000441594|HHATL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.791338	1041.56812	-0.33957	-0.00017718	-6.2148	-0.0032428	-6.5543	-0.00342	521.787999270776	65.7	0.64966	65.427	65.263	65.913	-0.27282	0.14275	-0.00073073	NaN	31.955	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346940	+		37964	19901	26015	26069							0.04900178956199852
LCLWPQGLL	9	Unmodified	_LCLWPQGLL_					0	0	0			REV__ENSG00000010282|ENST00000441594|HHATL	REV__ENSG00000010282|ENST00000441594|HHATL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.791338	1041.56812	-0.19529	-0.0001019	-6.2733	-0.0032733	-6.4686	-0.0033752	521.787963401626	65.415	0.72086	65.452	65.254	65.975	0.037384	0.16782	-0.00079178	NaN	31.955	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409720	+		37965	19901	26015	26069							0.04900178956199852
LCMTRCGKEG	10	Unmodified	_LCMTRCGKEG_					0	0	0		ENST00000480824.6_1_6:36893557-36893668:+|nuORF	ENST00000480824.6_1_6:36893557-36893668:+|nuORF	ENST00000480824.6_1_6:36893557-36893668:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.7767333984375	2	549.248654	1096.48276	0.32818	0.00018025	2.9237	0.0016058	3.2518	0.0017861	549.2487784326615	78.322	0.12772	78.09	78.006	78.134	-0.23141					4	2	2	0	0	0	0.03519	1	9341	9341		54.776	7.119	1	26118			37966	15212	26016	26070	43557	43557					-0.06162677563429497
LCMVFFLI	8	Unmodified	_LCMVFFLI_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000552414.1_1_12:46758372-46758504:-|nuORF	ENSG00000134294|ENST00000256689|SLC38A2;ENST00000552414.1_1_12:46758372-46758504:-|nuORF	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.78302001953125	2	493.26611	984.517667	-0.46967	-0.00023167	-2.2808	-0.001125	-2.7504	-0.0013567	493.26427190601237	47.125	0.49026	47.028	46.825	47.315	-0.096649					14	12	2	0	0	0	0.027866	1	4589	4589		54.895	11.269	1	63881			37967	4778;16624	26017	26071	43558	43558					0.024789333068611086
LCNEEAACY	9	Carbamidomethyl (C)	_LCNEEAAC(Carbamidomethyl (C))Y_	LC(0.001)NEEAAC(0.999)Y		LC(-30)NEEAAC(30)Y		0	1	0			REV__nc|ENSG00000115318|P58215-2|LOXL3	REV__nc|ENSG00000115318|P58215-2|LOXL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.7075805664062	2	536.707342	1071.40013	-0.10521	-5.6466E-05	-0.38654	-0.00020746	-0.49175	-0.00026393	536.7069331940141	56.957	1.1033	56.754	56.365	57.469	-0.20209					74	29	5	0	0	0	0.35646	1	6189	6189		68.787	12.066	2	6400800	+		37968	22192	26018	26072	43559	43559	290				-0.132712960905792
LCNHSLSLV	9	Unmodified	_LCNHSLSLV_					0	0	0			REV__ENSG00000206422|ENST00000383467|LRRC30	REV__ENSG00000206422|ENST00000383467|LRRC30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	493.260402	984.506251	-0.21312	-0.00010512	-0.24653	-0.0001216	-0.45965	-0.00022672	493.26025726995476	41.717	1.0562	41.585	40.897	41.953	-0.13219					66	29	4	0	0	0	0.20967	1	3772	3772		87.754	10.98	1	2581200	+		37969	28707	26019	26073	43560	43560					0.013378275370655501
LCNHSLSLV	9	Unmodified	_LCNHSLSLV_					0	0	0			REV__ENSG00000206422|ENST00000383467|LRRC30	REV__ENSG00000206422|ENST00000383467|LRRC30	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.260402	984.506251	-0.31284	-0.00015431	-0.47258	-0.0002331	-0.78542	-0.00038742	493.26030727814356	41.938	0.48586	41.706	41.351	41.837	-0.23186	0.075643	-4.5283E-05	NaN	87.754	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210370	+		37970	28707	26019	26073							0.013378275370655501
LCNHSLSLV	9	Unmodified	_LCNHSLSLV_					0	0	0			REV__ENSG00000206422|ENST00000383467|LRRC30	REV__ENSG00000206422|ENST00000383467|LRRC30	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.260402	984.506251	-0.080318	-3.9618E-05	-0.82756	-0.0004082	-0.90788	-0.00044782	493.2599371368791	41.869	0.5914	41.639	41.274	41.865	-0.2303	0.008779	-0.00039548	NaN	87.754	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148660	+		37971	28707	26019	26073							0.013378275370655501
LCPAGAVWAVE	11	Unmodified	_LCPAGAVWAVE_					0	0	0		ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39	ENSG00000204618|ENST00000244360|RNF39	ENSG00000204618|ENST00000244360|RNF39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.30126953125	2	558.281334	1114.54812	-0.39133	-0.00021847	-2.7999	-0.0015631	-3.1912	-0.0017816	558.2801219243713	29.437	0.12373	29.288	29.213	29.337	-0.14952					4	2	2	0	0	0	0.024743	1	1770	1770		20.947	0	1	33416			37972	10360	26020	26074	43561	43561					-0.004576167744062332
LCPATAVII	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))PATAVII_	LC(1)PATAVII		LC(50)PATAVII		0	1	0		ENSG00000256235|ENST00000526627|SMIM3	ENSG00000256235|ENST00000526627|SMIM3	ENSG00000256235|ENST00000526627|SMIM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2774658203125	2	479.275521	956.536489	0.51466	0.00024666	3.7322	0.0017887	4.2468	0.0020354	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.64155	1	10560	10560		50.025	7.6284	1	4752300			37973	10905	26021	26075	43562	43562	152				0.0564818620226788
LCPHHPFFAVN	11	Unmodified	_LCPHHPFFAVN_					0	0	0			REV__ENST00000263275.4_2_19:46056483-46056753:-|nuORF	REV__ENST00000263275.4_2_19:46056483-46056753:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	641.8423461914062	2	641.3135	1280.61245	-1.2734	-0.00081666	-2.3596	-0.0015132	-3.633	-0.0023299	641.311098184455	110.22	0.2977	110.08	109.89	110.19	-0.13983					12	11	2	0	0	0	0.024724	1	13523	13523		14.865	0	1	28190	+		37974	29685	26022	26076	43563	43563					-0.016634168975997454
LCPHWTQTV	9	Unmodified	_LCPHWTQTV_					0	0	0			REV__ENSG00000163746|ENST00000696113|PLSCR2	REV__ENSG00000163746|ENST00000696113|PLSCR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.243896484375	2	542.765852	1083.51715	-0.80224	-0.00043543	-2.5488	-0.0013834	-3.351	-0.0018188	542.7644894157871	67.766	0.49728	67.528	67.289	67.787	-0.23814					14	11	2	0	0	0	0.024381	1	7807	7807		29.15	0	1	144750	+		37975	25628	26023	26077	43564	43564					-0.021267700886710372
LCPLLALTLT	10	Unmodified	_LCPLLALTLT_					0	0	0			REV__ENST00000535003.5_1_1:110585575-110585701:+|nuORF	REV__ENST00000535003.5_1_1:110585575-110585701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.32861328125	2	529.319928	1056.6253	-0.70135	-0.00037124	2.164	0.0011454	1.4626	0.00077419	529.3212264680633	77.866	0.61211	77.866	77.51	78.122	0					19	14	2	0	0	0	0.03519	1	9634	9634		63.306	0	1	130490	+		37976	34661	26024	26078	43565	43565					0.09925601441909748
LCPLPASSGIL	11	Unmodified	_LCPLPASSGIL_					0	0	0			REV__ENSG00000118492|ENST00000397944|ADGB	REV__ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7974853515625	2	535.79936	1069.58417	-1.8095	-0.00096955	-1.5066	-0.00080723	-3.3161	-0.0017768	535.7984082857128	92.046	1.2111	91.902	91.401	92.612	-0.14356					79	28	4	0	0	0	0.6558	1	11309	11309		66.429	8.1994	1	1851100	+		37977	22408	26025	26079	43566	43566					0.05215840402456706
LCPMKLGIK	9	Unmodified	_LCPMKLGIK_					0	0	0			REV__ENST00000269919.10_1_19:18475054-18475243:+|nuORF	REV__ENST00000269919.10_1_19:18475054-18475243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2926330566406	2	501.795566	1001.57658	-0.1748	-8.7716E-05	4.051	0.0020328	3.8762	0.0019451	501.7972496888166	40.252	2.5418	40.14	38.969	41.511	-0.11222					139	70	4	0	0	0	0.024381	1	3317	3317		45.952	15.448	1	1050600	+		37978	29793	26026	26080	43567	43567					0.07585409601176707
LCPPPPPSAF	10	Unmodified	_LCPPPPPSAF_					0	0	0		ENST00000527426.1_1_11:47405038-47417061:-|nuORF	ENST00000527426.1_1_11:47405038-47417061:-|nuORF	ENST00000527426.1_1_11:47405038-47417061:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7742309570312	2	513.259871	1024.50519	-0.36627	-0.00018799	0.045592	2.3401E-05	-0.32068	-0.00016459	513.7599552277682	47.777	0.26023	47.679	47.557	47.817	-0.097553					10	6	2	0	0	0	0.03519	1	4696	4696		30.504	2.6214	1	80195			37979	16154	26027	26081	43568	43568					-0.006083868318455643
LCPPRVLPS	9	Unmodified	_LCPPRVLPS_					0	0	0		ENSG00000168334|ENST00000340369|XIRP1;nc|ENSG00000168334|Q702N8-3|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.79266357421875	2	491.281137	980.547722	-1.2772	-0.00062744	1.5454	0.00075925	0.26829	0.00013181	491.28185016541005	60.743	0.52795	60.821	60.464	60.992	0.07827					24	13	3	0	0	0	0.024354	1	6929	6929		38.806	0	1	242960			37980	7812	26028	26082	43569	43569					0.05667008296404674
LCPRRLVEG	9	Unmodified	_LCPRRLVEG_					0	0	0			REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	REV__ENST00000419314.5_1_7:64498910-64527388:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7735595703125	2	521.794943	1041.57533	-0.14004	-7.3072E-05	3.0163	0.0015739	2.8763	0.0015008	521.7972431861785	61.69	0.45262	61.433	61.175	61.628	-0.25725					18	10	2	0	0	0	0.024436	1	6901	6901		30.504	1.3541	1	145100	+		37981	32139	26029	26083	43570	43570					0.0562091155663893
LCQARFLF	8	Unmodified	_LCQARFLF_					0	0	0		ENST00000424889.7_1_16:30768276-30771618:+|nuORF	ENST00000424889.7_1_16:30768276-30771618:+|nuORF	ENST00000424889.7_1_16:30768276-30771618:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7664794921875	2	499.26803	996.521507	-0.25241	-0.00012602	3.155	0.0015752	2.9025	0.0014491	499.2691045006753	41.704	0.69996	41.571	41.285	41.985	-0.1322					24	19	2	0	0	0	0.027866	1	3805	3805		35.201	0	1	329280			37982	14051	26030	26084	43571	43571					0.023107391249141074
LCQEEQEVK	9	Unmodified	_LCQEEQEVK_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;ENST00000568782.1_1_15:43295571-43307995:-|nuORF;nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7848510742188	2	553.263339	1104.51212	0.0086726	4.7982E-06	1.9849	0.0010982	1.9936	0.001103	553.2641988467055	75.758	0.22696	75.582	75.507	75.734	-0.17548					6	5	2	0	0	0	0.024438	1	8964	8964		36.447	0	1	101450			37983	981;6749	26031	26085	43572	43572					-0.035951187419414055
LCQGNELALW	10	Unmodified	_LCQGNELALW_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.7826538085938	2	573.784241	1145.55393	-0.19469	-0.00011171	-2.964	-0.0017007	-3.1587	-0.0018124	573.782528465205	64.351	3.893	64.123	62.569	66.462	-0.22773					221	97	4	0	0	0	0.64538	1	7287	7287		71.877	8.3436	1	5968600			37984	8761	26032	26086	43573	43573					-0.013025182627643517
LCRPPLPEVY	10	Unmodified	_LCRPPLPEVY_					0	0	0			REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8018188476562	2	593.818084	1185.62162	-0.75195	-0.00044652	4.0207	0.0023876	3.2687	0.001941	593.8214236060176	35.91	0.40535	35.694	35.507	35.913	-0.21661					23	11	3	0	0	0	0.03519	1	2735	2735		20.947	0	1	815530	+		37985	29026	26033	26087	43574	43574					0.03622931668064666
LCRPRVRPR	9	Unmodified	_LCRPRVRPR_					0	0	0		ENST00000543465.5_1_12:7076398-7076876:-|nuORF	ENST00000543465.5_1_12:7076398-7076876:-|nuORF	ENST00000543465.5_1_12:7076398-7076876:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.3052978515625	2	576.848376	1151.6822	0.32293	0.00018628	3.7965	0.00219	4.1194	0.0023763	576.8508557205768	96.098	0.58047	95.961	95.682	96.263	-0.13671					24	13	3	0	0	0	0.024436	1	11837	11837		23.042	3.0457	1	138500			37986	16466	26034	26088	43575	43575					0.11242506561666232
LCRPVCRSTC	10	Unmodified	_LCRPVCRSTC_					0	0	0		ENSG00000212935|ENST00000391620|KRTAP10-3	ENSG00000212935|ENST00000391620|KRTAP10-3	ENSG00000212935|ENST00000391620|KRTAP10-3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7371215820312	2	569.269921	1136.52529	-0.19215	-0.00010939	-0.78268	-0.00044556	-0.97483	-0.00055494	569.7711592107055	57.276	0.5063	57.051	56.814	57.321	-0.2248					20	13	2	0	0	0	0.03519	1	6275	6275		19.997	4.355	1	167990			37987	10485	26035	26089	43576	43576					-0.03751282435177927
LCRRKSHLSPL	11	Unmodified	_LCRRKSHLSPL_					0	0	0		nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-2|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;ENSG00000082126|ENST00000409474|MPP4	nc|ENSG00000082126|Q96JB8-5|MPP4	nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.2571716308594	3	437.255563	1308.74486	1.1887	0.00051975	2.995	0.0013096	4.1836	0.0018293	437.2568354988285	97.354	2.8643	97.354	96.484	99.348	-3.8147E-05					200	65	5	0	0	0	1.0281	1	12370	12370		30.569	1.9921	1	1114100			37988	1723	26036	26090	43577	43577					0.10283607839210163
LCRYLSKV	8	Unmodified	_LCRYLSKV_					0	0	0		nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF	nc|nan|Q8WUR7-2|C15orf40	nc|nan|Q8WUR7-2|C15orf40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79266357421875	2	491.281137	980.547722	-0.55013	-0.00027027	0.64009	0.00031446	0.089953	4.4192E-05	491.28145671080836	60.722	0.48551	60.722	60.473	60.958	0					23	12	2	0	0	0	0.027866	1	7031	7031		45.952	0	1	221080			37989	7957	26037	26091	43578	43578					0.05667008296404674
LCSSPRALPE	10	Unmodified	_LCSSPRALPE_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167;REV__nc|nan|Q5SNV9-2|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7554321289062	2	536.776416	1071.53828	-1.0238	-0.00054955	-3.454	-0.001854	-4.4778	-0.0024036	536.7743416157579	38.332	0.32897	38.153	37.908	38.237	-0.17929					12	9	2	0	0	0	0.03519	1	3172	3172		30.318	0	1	183680	+		37990	37259;28817	26038	26092	43579	43579					0.005371952202267494
LCSWCCSSPS	10	Unmodified	_LCSWCCSSPS_					0	0	0		ENST00000373045.10_1_1:38259693-38260377:+|nuORF	ENST00000373045.10_1_1:38259693-38260377:+|nuORF	ENST00000373045.10_1_1:38259693-38260377:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.6962280273438	2	536.698463	1071.38237	-1.4802	-0.00079443	-3.7259	-0.0019997	-5.2061	-0.0027941	536.6968355088779	44.006	1.1346	44.006	43.658	44.793	0					88	32	5	0	0	0	0.98754	1	4153	4153		47.657	1.7054	1	7023300			37991	13067	26039	26093	43580	43580					-0.1504633461706817
LCTFNQLLEW	10	Unmodified	_LCTFNQLLEW_					0	0	0			REV__nc|ENSG00000124780|Q96T54-4|KCNK17	REV__nc|ENSG00000124780|Q96T54-4|KCNK17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	633.3692626953125	2	633.812999	1265.61144	0.21549	0.00013658	-1.1688	-0.00074079	-0.95329	-0.00060421	633.8120699377539	93.213	0.76352	93.213	92.708	93.472	0					24	17	2	0	0	0	0.03519	1	11802	11802		30.318	0	1	84462	+		37992	22787	26040	26094	43581	43581					-0.010736760571489867
LCTLALHVLP	10	Unmodified	_LCTLALHVLP_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7925415039062	2	540.31772	1078.62089	-0.85324	-0.00046102	-3.4918	-0.0018867	-4.3451	-0.0023477	540.3156686535921	78.553	0.73112	78.398	78	78.731	-0.15592					34	16	3	0	0	0	0.03519	1	9392	9392		30.504	0	1	231720			37993	8343	26041	26095	43582	43582					0.08472137018998183
LCTLMTLVL	9	Unmodified	_LCTLMTLVL_					0	0	0			REV__ENSG00000001561|ENST00000321037|ENPP4	REV__ENSG00000001561|ENST00000321037|ENPP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7861022949219	2	503.787407	1005.56026	-0.5934	-0.00029895	0.61544	0.00031005	0.022041	1.1104E-05	503.78766809417283	54.415	1.0401	54.415	54.043	55.083	0					80	29	4	0	0	0	0.78069	1	5975	5975		40.573	1.7665	1	11352000	+		37994	19759	26042	26096	43583	43583					0.057702836444263994
LCTLQILTL	9	Unmodified	_LCTLQILTL_					0	0	0			REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant	REV__SLC4A8|p.F955L|1|0.19|ENSG00000050438|chr12:51495040-51495040|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.3061218261719	2	509.304278	1016.594	-1.0243	-0.0005217	4.4212	0.0022517	3.3968	0.00173	509.306410243242	91.78	1.6681	91.78	91.383	93.051	0					111	39	5	0	0	0	0.77768	1	11630	11630		40.778	1.5253	1	3058500	+		37995	37508	26043	26097	43584	43584					0.08637028407838443
LCTPSEKRR	9	Unmodified	_LCTPSEKRR_					0	0	0			REV__ENST00000428753.1_1_10:71335887-71336873:+|nuORF	REV__ENST00000428753.1_1_10:71335887-71336873:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3168334960938	2	545.295307	1088.57606	-0.5885	-0.00032091	-3.4448	-0.0018784	-4.0333	-0.0021993	545.2937463395386	91.542	0.17063	91.419	91.286	91.456	-0.12341					5	3	2	0	0	0	0.024484	1	11227	11227		30.318	0	1	23459	+		37996	32325	26044	26098	43585	43585					0.035317062056719806
LCTWLLLL	8	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))LC(Carbamidomethyl (C))TWLLLL_	LC(1)TWLLLL		LC(87)TWLLLL		1	1	0		PENK|p.G17R|1|0.24|ENSG00000181195|chr8:56445905-56445905|C/T|missense_variant;ENSG00000181195|ENST00000451791|PENK	PENK|p.G17R|1|0.24|ENSG00000181195|chr8:56445905-56445905|C/T|missense_variant	PENK|p.G17R|1|0.24|ENSG00000181195|chr8:56445905-56445905|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.3048706054688	2	537.306821	1072.59909	-0.39727	-0.00021346	-2.9876	-0.0016053	-3.3849	-0.0018187	537.3050982896028	72.825	2.0267	72.825	71.489	73.516	0					61	37	3	0	0	0	0.48546	1	8826	8826		86.935	21.469	1	1581300			37997	9028	26045	26099	43586	43586	110				0.06569332270464656
LCVNGFYIP	9	Unmodified	_LCVNGFYIP_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-4|MED23	REV__nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2845458984375	2	513.259871	1024.50519	0.16	8.2121E-05	-3.5145	-0.0018039	-3.3545	-0.0017218	513.2580389859614	61.882	0.45389	61.655	61.455	61.909	-0.22663					26	11	3	0	0	0	0.024412	1	7174	7174		31.955	7.7521	1	509940	+		37998	21987	26046	26100	43587	43587					-0.006083868318455643
LCVQRRMLV	9	Unmodified	_LCVQRRMLV_					0	0	0			REV__ENSG00000181733|ENST00000641125|OR2Z1	REV__ENSG00000181733|ENST00000641125|OR2Z1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.791748046875	2	559.320271	1116.62599	-0.53439	-0.0002989	-4.03	-0.002254	-4.5644	-0.0025529	559.3177413160168	65.201	0.65364	64.966	64.768	65.421	-0.2345					29	15	2	0	0	0	0.024412	1	7445	7445		50.025	25.505	1	678730	+		37999	27419	26047	26101	43588	43588					0.07234117609982604
LCVQRRMLV	9	Unmodified	_LCVQRRMLV_					0	0	0			REV__ENSG00000181733|ENST00000641125|OR2Z1	REV__ENSG00000181733|ENST00000641125|OR2Z1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	559.320271	1116.62599	-0.43866	-0.00024535	-4.7284	-0.0026447	-5.1671	-0.00289	559.3172958198643	64.871	1.2725	64.908	64.217	65.489	0.037384	-0.039583	-0.0012342	NaN	40.573	47	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2213200	+		38000	27419	26047	26101							0.07234117609982604
LCVQRRMLV	9	Unmodified	_LCVQRRMLV_					0	0	0			REV__ENSG00000181733|ENST00000641125|OR2Z1	REV__ENSG00000181733|ENST00000641125|OR2Z1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.320271	1116.62599	-1.267	-0.00070866	-3.7438	-0.002094	-5.0108	-0.0028027	559.3178540185776	65.189	0.77988	64.987	64.778	65.557	-0.20254	0.038713	-0.00013278	NaN	40.573	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	795870	+		38001	27419	26047	26101							0.07234117609982604
LCWDLQWQ	8	Unmodified	_LCWDLQWQ_					0	0	0		ENST00000393784.7_1_5:172378568-172378688:+|nuORF	ENST00000393784.7_1_5:172378568-172378688:+|nuORF	ENST00000393784.7_1_5:172378568-172378688:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7793579101562	2	546.252577	1090.4906	-0.8584	-0.0004689	0.61155	0.00033406	-0.24685	-0.00013484	546.7537769764101	73.566	0.45875	73.295	72.925	73.384	-0.27126					16	11	2	0	0	0	0.027866	1	8948	8948		33.516	0.70317	1	167190			38002	13465	26048	26102	43589	43589					-0.051024589799908426
LCWLGVALD	9	Unmodified	_LCWLGVALD_					0	0	0			REV__ENST00000604062.6_2_X:53123346-53128674:+|nuORF	REV__ENST00000604062.6_2_X:53123346-53128674:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7762145996094	2	495.259871	988.505189	-1.8657	-0.00092401	-1.3808	-0.00068386	-3.2465	-0.0016079	495.2589826700689	60.295	0.63379	60.373	60.088	60.722	0.078888					32	16	3	0	0	0	0.024325	1	6809	6809		46.766	7.9603	1	747360	+		38003	30967	26049	26103	43590	43590					0.010476131681571133
LCWLRALL	8	Unmodified	_LCWLRALL_					0	0	0			REV__nc|ENSG00000160179|P45844-8|ABCG1	REV__nc|ENSG00000160179|P45844-8|ABCG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7762145996094	2	494.294048	986.573543	-1.808	-0.00089371	4.431	0.0021902	2.6229	0.0012965	494.29602037802346	60.222	0.86887	60.301	60.049	60.918	0.078888					44	22	4	0	0	0	0.027866	1	6809	6809		54.765	19.146	1	1462000	+		38004	36833	26050	26104	43591	43591					0.07971902538690756
LCWWEEGT	8	Unmodified	_LCWWEEGT_					0	0	0		ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENST00000472106.2_1_8:102504814-102555784:+|nuORF	ENST00000472106.2_1_8:102504814-102555784:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2534790039062	2	512.21566	1022.41677	-0.60611	-0.00031046	-3.183	-0.0016304	-3.7891	-0.0019409	512.2141565549397	54.24	0.4158	54.104	54.053	54.469	-0.13617					17	11	2	0	0	0	0.027866	1	5807	5807		33.516	0	1	256180			38005	14984	26051	26105	43592	43592					-0.09354427142307031
LCYGCYAAK	9	Unmodified	_LCYGCYAAK_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2772521972656	2	496.222431	990.430309	-0.42664	-0.00021171	1.3613	0.00067551	0.93467	0.00046381	496.2233622535355	20.298	0.72654	20.298	19.929	20.656	0					17	14	2	0	0	0	0.024466	1	555	555		33.516	0	1	12967			38006	1536	26052	26106	43593	43593					-0.0652889263473071
LCYVRYSY	8	Unmodified	_LCYVRYSY_					0	0	0			REV__nc|ENSG00000163931|P29401-2|TKT	REV__nc|ENSG00000163931|P29401-2|TKT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7562255859375	2	533.754953	1065.49535	0.24149	0.0001289	1.9928	0.0010636	2.2342	0.0011925	533.7559492735063	58.997	1.3673	58.756	58.173	59.54	-0.24165					94	33	5	0	0	0	0.65272	1	6503	6503		71.378	2.5911	1	6176100	+		38007	36858	26053	26107	43594	43594					-0.0347757483721125
LDADIAAQKL	10	Unmodified	_LDADIAAQKL_					0	0	0		nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2974243164062	2	529.298039	1056.58152	-0.22091	-0.00011693	-0.71947	-0.00038082	-0.94038	-0.00049774	529.2974915684347	106.43	0.70708	106.43	106.04	106.75	-0.0013199					53	23	4	0	0	0	1.0616	1	13626	13626		37.812	4.9991	1	1408400			38008	5995	26054	26108	43595	43595					0.0554970826913177
LDADPTQIMKS	11	Unmodified	_LDADPTQIMKS_					0	0	0			REV__ENSG00000106305|ENST00000223029|AIMP2	REV__ENSG00000106305|ENST00000223029|AIMP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	608.819580078125	2	609.805371	1217.59619	-0.77845	-0.0004747	0.30524	0.00018614	-0.47321	-0.00028857	609.8051459063379	64.514	0.23126	64.258	64.076	64.307	-0.25563					8	5	2	0	0	0	0.024741	1	7325	7325		23.523	7.0495	1	108380	+		38009	21608	26055	26109	43596	43596					-0.0039058764502897247
LDADPTQIMKS	11	Unmodified	_LDADPTQIMKS_					0	0	0			REV__ENSG00000106305|ENST00000223029|AIMP2	REV__ENSG00000106305|ENST00000223029|AIMP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	609.805371	1217.59619	-0.75908	-0.00046289	-4.7762	-0.0029125	-5.5353	-0.0033754	610.3030489579762	64.723	0.11874	64.52	64.42	64.539	-0.20254	0.13114	-0.0032386	NaN	28.081	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53460	+		38010	21608	26055	26109							-0.0039058764502897247
LDADRNTY	8	Unmodified	_LDADRNTY_					0	0	0			REV__nc|ENSG00000112175|P22003-2|BMP5	REV__nc|ENSG00000112175|P22003-2|BMP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2741394042969	2	484.227613	966.440674	-1.4074	-0.00068151	1.4675	0.00071059	0.060059	2.9082E-05	484.22821970746605	29.934	0.20692	30.012	29.842	30.049	0.078344					7	4	2	0	0	0	0.027866	1	1830	1830		27.882	0	1	30434	+		38011	21974	26056	26110	43597	43597					-0.04388870384298116
LDAGNIKLT	9	Unmodified	_LDAGNIKLT_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B;ENST00000546626.1_1_12:50035771-50036335:+|nuORF	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7534484863281	2	472.7742	943.533846	-0.27748	-0.00013118	1.3545	0.00064038	1.077	0.0005092	472.77467173618	35.851	0.53754	35.851	35.492	36.029	0					18	13	2	0	0	0	0.024447	1	2799	2799		13.454	0	1	210890			38012	3067	26057	26111	43598	43598					0.059820540689429436
LDAGRGCSH	9	Unmodified	_LDAGRGCSH_					0	0	0			REV__ENST00000524699.5_1_11:66105107-66105356:-|nuORF	REV__ENST00000524699.5_1_11:66105107-66105356:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2235412597656	2	458.208701	914.402849	0.59379	0.00027208	3.5324	0.0016186	4.1262	0.0018906	458.21025951855285	101.25	0.72765	101.25	100.85	101.58	-0.0054474					23	16	2	0	0	0	0.024457	1	12884	12884		10.265	2.034	1	144090	+		38013	34393	26058	26112	43599	43599					-0.057776598507416566
LDAGVDYSGY	10	Unmodified	_LDAGVDYSGY_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2342529296875	2	530.235104	1058.45566	-0.46154	-0.00024472	0.15988	8.4774E-05	-0.30166	-0.00015995	530.2349111657795	67.216	0.90997	66.978	66.72	67.629	-0.23814					68	21	5	0	0	0	0.82838	1	7759	7759		58.782	2.0609	1	8105400			38014	5355	26059	26113	43600	43600					-0.0712342330696174
LDAHLNPSLL	10	Unmodified	_LDAHLNPSLL_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENST00000549964.1_1_12:56726569-56726878:-|nuORF;ENST00000547994.5_1_12:56718022-56726878:-|nuORF;PAN2|p.D739Vfs*9|1|0.34|ENSG00000135473|chr12:56323567-56323567|T/-|frameshift_variant	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2899780273438	2	546.806031	1091.59751	-0.67542	-0.00036932	4.0864	0.0022345	3.411	0.0018652	547.3099665976774	97.308	1.059	97.308	96.881	97.94	0					32	23	2	0	0	0	0.03519	1	12416	12416		82.241	2.5279	1	123770			38015	4901	26060	26114	43601	43601					0.05537414506034111
LDAIEKLHEE	10	Unmodified	_LDAIEKLHEE_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	598.8078002929688	2	598.81151	1195.60847	-0.59879	-0.00035856	-0.88152	-0.00052786	-1.4803	-0.00088643	598.8103532071242	104.76	0.45581	104.76	104.47	104.93	0.00096893					22	14	2	0	0	0	1.1329	1	13401	13401		27.882	0	1	59177	+		38016	22447	26061	26115	43602	43602					0.018487720896473547
LDAILYHPQ	9	Unmodified	_LDAILYHPQ_					0	0	0		ENST00000484744.5_1_2:74686102-74686318:+|nuORF;ENST00000492047.1_1_2:74686102-74686813:+|nuORF	ENST00000484744.5_1_2:74686102-74686318:+|nuORF	ENST00000484744.5_1_2:74686102-74686318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8364868164062	2	535.287474	1068.5604	-0.26206	-0.00014028	2.0805	0.0011137	1.8185	0.0009734	535.7907416653562	71.661	0.55457	71.672	71.434	71.989	0.010735					19	14	2	0	0	0	0.024436	1	8662	8662		30.504	0	1	294520			38017	15310	26062	26116	43603	43603					0.028857429602794582
LDAIYHNI	8	Unmodified	_LDAIYHNI_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.28900146484375	2	479.753267	957.491981	1.0721	0.00051435	2.5244	0.0012111	3.5965	0.0017254	479.7544259679118	65.668	0.52438	65.668	65.426	65.95	0					35	13	4	0	0	0	0.027866	1	7831	7831		17.365	0	1	630540			38018	1112;18045	26063	26117	43604	43604					0.01153498380426754
LDAKKKLPS	9	Unmodified	_LDAKKKLPS_					0	0	0		ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.3088684082031	2	500.313492	998.612431	-0.49201	-0.00024616	-0.33421	-0.00016721	-0.82623	-0.00041337	500.31318271913034	32.215	0.55007	32.227	31.863	32.413	0.011799					23	13	2	0	0	0	0.024209	1	2175	2175		56.721	1.9447	1	150230			38019	17545	26064	26118	43605	43605					0.11306906374034043
LDAKKKLPS	9	Unmodified	_LDAKKKLPS_					0	0	0		ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.3092956542969	2	500.313492	998.612431	-0.31605	-0.00015813	-0.55955	-0.00027995	-0.8756	-0.00043808	500.3131361862279	32.029	0.5976	32.092	31.68	32.278	0.062885					26	14	2	0	0	0	0.023454	1	2118	2118		82.241	50.711	1	188200			38020	17545	26064	26118	43606	43606					0.11306906374034043
LDAKKKLPS	9	Unmodified	_LDAKKKLPS_					0	0	0		ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.313492	998.612431	-0.0055221	-2.7628E-06	-0.65457	-0.00032749	-0.66009	-0.00033025	500.313115271094	32.362	0.42812	32.125	31.91	32.339	-0.23667	-0.083293	-0.00022716	NaN	82.241	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48991			38021	17545	26064	26118							0.11306906374034043
LDAKKKLPS	9	Unmodified	_LDAKKKLPS_					0	0	0		ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.313492	998.612431	0.32286	0.00016153	-0.72199	-0.00036122	-0.39912	-0.00019969	500.3127111191515	32.4	0.51812	32.207	31.899	32.417	-0.19261	-0.0011044	-0.00029462	NaN	82.241	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60532			38022	17545	26064	26118							0.11306906374034043
LDAKKKLPS	9	Unmodified	_LDAKKKLPS_					0	0	0		ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.313492	998.612431	-0.63723	-0.00031882	0.69455	0.0003475	0.05732	2.8678E-05	500.313554034114	32.435	0.4155	32.278	31.948	32.363	-0.15772	0.069552	0.0011228	NaN	82.241	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61708			38023	17545	26064	26118							0.11306906374034043
LDALDNIFD	9	Unmodified	_LDALDNIFD_					0	0	0			REV__ENST00000523006.1_1_7:139219111-139219246:+|nuORF	REV__ENST00000523006.1_1_7:139219111-139219246:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2566528320312	2	518.253297	1034.49204	0.14491	7.5101E-05	-2.1108	-0.0010939	-1.9659	-0.0010188	518.251472364974	81.938	0.77094	81.811	81.506	82.277	-0.12744					27	18	3	0	0	0	0.02435	1	10186	10186		42.396	8.2236	1	120190	+		38024	34346	26065	26119	43607	43607					-0.023825464102401384
LDALDTHHS	9	Unmodified	_LDALDTHHS_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32366943359375	2	504.740888	1007.46722	-0.061048	-3.0814E-05	-2.8138	-0.0014202	-2.8748	-0.0014511	504.7394923179491	78.77	0.74942	78.789	78.524	79.274	0.018677					26	17	2	0	0	0	0.024436	1	9724	9724		30.504	0	1	90832	+		38025	28046	26066	26120	43608	43608					-0.03621181492951564
LDALLALAKM	10	Unmodified	_LDALLALAKM_					0	0	0			REV__ENSG00000155269|ENST00000382487|GPR78	REV__ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.825927734375	2	529.817553	1057.62055	-0.14063	-7.4508E-05	-2.748	-0.0014559	-2.8886	-0.0015305	529.8166765876556	68.381	0.89134	68.12	67.814	68.706	-0.26166					48	21	4	0	0	0	0.74632	1	7930	7930		64.207	1.2288	1	7798900	+		38026	24999	26067	26121	43609	43609					0.0940471729913952
LDALLVQTH	9	Unmodified	_LDALLVQTH_					0	0	0			REV__ENSG00000226288|ENST00000641896|OR52I2	REV__ENSG00000226288|ENST00000641896|OR52I2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32379150390625	2	505.287474	1008.5604	0.03586	1.812E-05	-0.14107	-7.1281E-05	-0.10521	-5.3161E-05	505.28771446955784	79.108	0.41428	79.127	78.818	79.233	0.018677					15	7	3	0	0	0	0.023837	1	9712	9712		84.916	35.474	1	429590	+		38027	28871	26068	26122	43610	43610					0.056457429602687625
LDAQIKNKP	9	Unmodified	_LDAQIKNKP_					0	0	0		nc|ENSG00000149201|Q6ZN84-3|CCDC81;nc|ENSG00000149201|Q6ZN84-2|CCDC81;ENSG00000149201|ENST00000445632|CCDC81	nc|ENSG00000149201|Q6ZN84-3|CCDC81	nc|ENSG00000149201|Q6ZN84-3|CCDC81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.790283203125	2	513.800749	1025.58694	-1.1801	-0.00060632	1.848	0.00094953	0.66797	0.00034321	513.8014166210056	55.067	0.5681	55.165	54.916	55.484	0.098015					35	15	3	0	0	0	0.024323	1	5990	5990		35.618	0	1	680290			38028	6070	26069	26123	43611	43611					0.07517431851601941
LDARRGGPPS	10	Unmodified	_LDARRGGPPS_					0	0	0			REV__ENST00000497742.6_1_3:49463844-49466652:-|nuORF	REV__ENST00000497742.6_1_3:49463844-49466652:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3064575195312	2	513.277972	1024.54139	-0.88825	-0.00045592	2.2626	0.0011614	1.3744	0.00070543	513.2789604881732	53.527	0.43008	53.623	53.444	53.874	0.095669					20	11	2	0	0	0	0.03519	1	5701	5701		40.778	3.6191	1	340700	+		38029	33858	26070	26124	43612	43612					0.03010206389240011
LDASLTQLL	9	Unmodified	_LDASLTQLL_					0	0	0			REV__ENST00000334512.9_1_10:80828941-80878774:+|nuORF	REV__ENST00000334512.9_1_10:80828941-80878774:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2348937988281	2	487.281857	972.549162	-1.0086	-0.00049148	-2.6675	-0.0012998	-3.6761	-0.0017913	487.27931139114787	48.437	0.32147	48.161	48.004	48.326	-0.27598					10	8	2	0	0	0	0.024292	1	4768	4768		40.778	0	1	79959	+		38030	30517	26071	26125	43613	43613					0.06178920866148019
LDATAQLEP	9	Unmodified	_LDATAQLEP_					0	0	0			REV__ENSG00000161609|ENST00000447857|KASH5	REV__ENSG00000161609|ENST00000447857|KASH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.769287109375	2	479.248015	956.481476	0.83052	0.00039803	-1.0138	-0.00048584	-0.18324	-8.7818E-05	479.24747904911726	51.229	0.8501	51.229	50.92	51.77	0					45	23	3	0	0	0	0.023454	1	5489	5489		44.377	0	1	595120	+		38031	25388	26072	26126	43614	43614					0.001494709353437429
LDAVKKTIV	9	Unmodified	_LDAVKKTIV_					0	0	0			REV__ENSG00000198681|ENST00000356661|MAGEA1	REV__ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.81561279296875	2	493.815867	985.617182	-0.01645	-8.1233E-06	1.0439	0.0005155	1.0275	0.00050738	493.8161430642543	66.741	1.2941	66.741	66.461	67.755	0					65	32	4	0	0	0	1.0104	1	7932	7932		18.262	3.3972	1	2254700	+		38032	28449	26073	26127	43615	43615					0.12379790516820321
LDAWRVRKKGP	11	Unmodified	_LDAWRVRKKGP_					0	0	0			REV__nc|ENSG00000119596|P49750-1|YLPM1	REV__nc|ENSG00000119596|P49750-1|YLPM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2745666503906	3	442.598206	1324.77279	-0.79007	-0.00034969	3.9757	0.0017596	3.1856	0.00141	442.59989610805206	49.591	1.4205	49.665	48.95	50.37	0.074192					75	39	2	0	0	0	0.024759	1	5182	5182		23.378	6.6605	1	880440	+		38033	22466	26074	26128	43616	43616					0.12339254090920804
LDAWRVRKKGP	11	Unmodified	_LDAWRVRKKGP_					0	0	0			REV__nc|ENSG00000119596|P49750-1|YLPM1	REV__nc|ENSG00000119596|P49750-1|YLPM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	442.598206	1324.77279	0.17539	7.7629E-05	3.0586	0.0013537	3.234	0.0014313	442.5995019898748	49.679	1.3374	49.679	49.039	50.376	0	0.065354	-0.00032374	NaN	8.7993	72	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	792740	+		38034	22466	26074	26128							0.12339254090920804
LDAWRVRKKGP	11	Unmodified	_LDAWRVRKKGP_					0	0	0			REV__nc|ENSG00000119596|P49750-1|YLPM1	REV__nc|ENSG00000119596|P49750-1|YLPM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	442.598206	1324.77279	-0.067607	-2.9923E-05	3.1113	0.0013771	3.0437	0.0013471	442.59952267118564	49.729	1.2853	49.449	48.898	50.183	-0.27977	-0.16367	-0.00025374	NaN	8.7993	94	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501100	+		38035	22466	26074	26128							0.12339254090920804
LDCADAIEH	9	Unmodified	_LDCADAIEH_					0	0	0			REV__nc|ENSG00000157388|Q01668-2|CACNA1D	REV__nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2930603027344	2	493.716024	985.417496	-0.88024	-0.00043459	-3.4293	-0.0016931	-4.3096	-0.0021277	493.7144082184267	45.992	0.37949	45.84	45.683	46.062	-0.15156					18	10	2	0	0	0	0.024457	1	4511	4511		37.159	7.3176	1	241170	+		38036	36811	26075	26129	43617	43617					-0.07579632493263944
LDCCHRLV	8	Unmodified	_LDCCHRLV_					0	0	0			REV__ENSG00000255423|ENST00000533473|EBLN2	REV__ENSG00000255423|ENST00000533473|EBLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.73529052734375	2	479.733497	957.452441	-0.28822	-0.00013827	3.3898	0.0016262	3.1016	0.0014879	479.735127465436	59.625	2.406	59.711	59.314	61.72	0.085682					151	63	4	0	0	0	0.87148	1	6790	6790		53.351	3.9099	1	56880000	+		38037	29067	26076	26130	43618	43618					-0.02798668166292373
LDCGGCAEAMY	11	Oxidation (M)	_LDCGGCAEAM(Oxidation (M))Y_		LDCGGCAEAM(1)Y		LDCGGCAEAM(41)Y	0	0	1			REV__nc|ENSG00000175267|A6NCI4-2|VWA3A	REV__nc|ENSG00000175267|A6NCI4-2|VWA3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.7056274414062	2	574.706485	1147.39842	-0.49281	-0.00028322	-2.8688	-0.0016487	-3.3616	-0.0019319	574.7046569713458	63.107	0.56777	62.923	62.704	63.272	-0.18386					31	13	3	0	0	0	0.98218	1	7123	7123		40.778	12.896	1	926430	+		38038	26934	26077	26131	43619	43619		798			-0.16938673170830043
LDCHKKYF	8	Unmodified	_LDCHKKYF_					0	0	0		ENST00000336278.8_1_16:69334823-69334964:+|nuORF	ENST00000336278.8_1_16:69334823-69334964:+|nuORF	ENST00000336278.8_1_16:69334823-69334964:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2984619140625	2	527.262945	1052.51134	-1.1482	-0.00060538	2.3633	0.0012461	1.2151	0.0006407	527.2640574613149	38.89	0.88432	38.89	38.473	39.357	0					61	23	4	0	0	0	0.027866	1	3236	3236		20.482	0	1	1724700			38039	12406	26078	26132	43620	43620					-0.012818686003129187
LDCPGAAVQP	10	Unmodified	_LDCPGAAVQP_					0	0	0			REV__ENST00000394963.8_1_12:50493795-50494071:+|nuORF	REV__ENST00000394963.8_1_12:50493795-50494071:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.8114318847656	2	485.73676	969.458967	-0.054538	-2.6491E-05	-2.9199	-0.0014183	-2.9744	-0.0014448	485.73516299913774	42.369	0.40893	42.139	41.997	42.406	-0.2303					14	10	2	0	0	0	0.03519	1	3804	3804		35.618	0	1	94759	+		38040	31682	26079	26133	43621	43621					-0.02698451733931506
LDCSKPGIVV	10	Unmodified	_LDCSKPGIVV_					0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3082885742188	2	515.78371	1029.55287	0.04274	2.2044E-05	-2.446	-0.0012616	-2.4033	-0.0012396	515.7819208255858	87.195	0.92838	87.058	86.53	87.459	-0.13734					19	13	2	0	0	0	0.03519	1	10581	10581		40.778	1.5253	1	159290	+		38041	21642	26080	26134	43622	43622					0.039272673683626635
LDCSTHTRTNA	11	Unmodified	_LDCSTHTRTNA_					0	0	0		ENST00000296257.9_1_3:185347643-185347886:+|nuORF	ENST00000296257.9_1_3:185347643-185347886:+|nuORF	ENST00000296257.9_1_3:185347643-185347886:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.73486328125	3	406.855905	1217.54588	-0.0058638	-2.3857E-06	-1.4162	-0.00057619	-1.4221	-0.00057858	406.8553346872791	22.398	0.36986	22.213	22	22.369	-0.18539					10	7	2	0	0	0	0.024734	1	790	790		27.644	17.54	1	14360			38042	11840	26081	26135	43623	43623					-0.05418697250161131
LDCTIRGLQ	9	Carbamidomethyl (C)	_LDC(Carbamidomethyl (C))TIRGLQ_	LDC(1)TIRGLQ		LDC(85)TIRGLQ		0	1	0		ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	ENSG00000007202|ENST00000528896|BLTP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.27880859375	2	538.281866	1074.54918	-0.71433	-0.00038451	-3.8929	-0.0020955	-4.6072	-0.00248	538.2796007312628	45.575	0.64312	45.575	45.31	45.953	0					46	18	3	0	0	0	0.23085	1	4444	4444		84.916	13.038	1	4032100			38043	810	26082	26136	43624	43624	12				0.014885975944935126
LDCVHVTTI	9	Unmodified	_LDCVHVTTI_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7779235839844	2	500.760235	999.505917	1.8475	0.00092517	-2.3153	-0.0011594	-0.46773	-0.00023422	500.75775355443943	63.786	0.42781	63.832	63.583	64.011	0.045502					14	11	2	0	0	0	0.024457	1	7416	7416		29.15	0	1	58402			38044	6165	26083	26137	43625	43625					0.0061440781720421
LDCVPEGDAL	10	Unmodified	_LDCVPEGDAL_					0	0	0		nc|ENSG00000169344|P07911-5|UMOD;nc|ENSG00000169344|P07911-3|UMOD;nc|ENSG00000169344|P07911-4|UMOD;ENSG00000169344|ENST00000396138|UMOD	nc|ENSG00000169344|P07911-5|UMOD	nc|ENSG00000169344|P07911-5|UMOD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2996215820312	2	516.239332	1030.46411	-0.34893	-0.00018013	4.3375	0.0022392	3.9886	0.0020591	516.2439881618909	103.82	2.3818	103.81	102.83	105.21	-0.0032196					102	63	3	0	0	0	0.03519	1	13307	13307		58.782	8.7574	1	66820			38045	18499	26084	26138	43626	43626					-0.0499019266196683
LDDASYDGDT	10	Unmodified	_LDDASYDGDT_					0	0	0			REV__FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	REV__FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.8131713867188	2	536.209283	1070.40401	-0.96375	-0.00051677	1.408	0.00075497	0.44423	0.0002382	536.2098551050367	51.905	0.54406	51.758	51.477	52.021	-0.14735					35	15	3	0	0	0	0.03519	1	5517	5517		25.574	0	1	661300	+		38046	20693	26085	26139	43627	43627					-0.1283721179152053
LDDCSWNY	8	Carbamidomethyl (C)	_LDDC(Carbamidomethyl (C))SWNY_	LDDC(1)SWNY		LDDC(59)SWNY		0	1	0			REV__nc|ENSG00000145990|Q9NXC2-2|GFOD1	REV__nc|ENSG00000145990|Q9NXC2-2|GFOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.707275390625	2	536.705657	1071.39676	-0.54442	-0.00029219	3.3853	0.0018169	2.8409	0.0015247	536.7073116351955	56.862	1.2038	56.695	56.402	57.606	-0.1672					66	31	3	0	0	0	0.80469	1	6200	6200		58.782	12.83	1	6407500	+		38047	24448	26086	26140	43628	43628	322				-0.13608222872949227
LDDIEFFITK	10	Unmodified	_LDDIEFFITK_					0	0	0		EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant;ENST00000535734.5_1_12:15811000-15814989:-|nuORF;nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant	EPS8|p.R610Wfs*11|1|0.13|ENSG00000151491|chr12:15631659-15631660|-/CCAC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.2893981933594	3	414.220178	1239.63871	-0.39706	-0.00016447	-4.3031	-0.0017824	-4.7002	-0.0019469	414.2182685279059	34.658	0.60968	34.451	34.242	34.852	-0.20696					20	14	2	0	0	0	0.03519	1	2537	2537		3.4087	0	1	64995			38048	17617	26087	26141	43629	43629					0.028471307548443292
LDDKFFIM	8	Unmodified	_LDDKFFIM_					0	0	0			REV__ENST00000458495.1_1_21:33213068-33213167:+|nuORF	REV__ENST00000458495.1_1_21:33213068-33213167:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8001098632812	2	514.759704	1027.50485	-0.44437	-0.00022874	4.3514	0.0022399	3.9071	0.0020112	514.7618890686083	45.371	0.67933	45.16	44.91	45.589	-0.21109					32	19	2	0	0	0	0.027866	1	4319	4319		42.474	0	1	708290	+		38049	31893	26088	26142	43630	43630					-0.007798065516908537
LDDLMSYSLD	10	Unmodified	_LDDLMSYSLD_					0	0	0			REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF;REV__ENSG00000160255|ENST00000652462|ITGB2	REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.7686157226562	2	586.263004	1170.51146	0.21943	0.00012865	-3.6727	-0.0021532	-3.4533	-0.0020245	586.2610113464907	79.779	0.62957	79.533	79.32	79.949	-0.2465					22	14	2	0	0	0	0.03519	1	9533	9533		47.657	1.6851	1	644350	+		38050	33887;25302	26089	26143	43631	43631					-0.06697958181644026
LDDLMSYSLD	10	Unmodified	_LDDLMSYSLD_					0	0	0			REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF;REV__ENSG00000160255|ENST00000652462|ITGB2	REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.7691650390625	2	586.263004	1170.51146	-0.43945	-0.00025764	-3.465	-0.0020314	-3.9045	-0.0022891	586.2611625618963	79.708	0.58731	79.557	79.278	79.866	-0.15051					17	13	2	0	0	0	0.03519	1	9520	9520		58.782	0	1	460980	+		38051	33887;25302	26089	26143	43632	43632					-0.06697958181644026
LDDPDQLQ	8	Unmodified	_LDDPDQLQ_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8046569824219	2	472.221997	942.429441	-0.41021	-0.00019371	1.6724	0.00078973	1.2622	0.00059602	472.22278169563	55.765	1.1633	55.863	55.083	56.246	0.098015					53	31	2	0	0	0	0.027866	1	6116	6116		40.778	0	1	430510	+		38052	22280	26090	26144	43633	43633					-0.0440769247843491
LDDQVRQL	8	Unmodified	_LDDQVRQL_					0	0	0			REV__ENST00000599420.5_1_19:17314011-17316785:+|nuORF	REV__ENST00000599420.5_1_19:17314011-17316785:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.8193664550781	2	493.766906	985.519259	2.48	0.0012245	2.5535	0.0012608	5.0335	0.0024854	493.7680242097428	18.564	0.24321	18.564	18.431	18.674	0					6	4	2	0	0	0	0.027866	1	291	291		24.203	1.1603	1	18880	+		38053	35829	26091	26145	43634	43634					0.025919819208070294
LDDREHAL	8	Unmodified	_LDDREHAL_					0	0	0		ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	ENSG00000275793|ENST00000619918|RIMBP3	ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2940368652344	2	484.743431	967.472308	0.02882	1.397E-05	-4.1328	-0.0020034	-4.104	-0.0019894	484.7414456483789	71.38	1.0357	71.118	70.602	71.638	-0.262					33	24	2	0	0	0	0.027866	1	8269	8269		57.811	0	1	171010			38054	9208	26092	26146	43635	43635					-0.012728776303333689
LDDREKAKY	9	Unmodified	_LDDREKAKY_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MSMS	OPSCC_40_ClassI_Rep-1	4	569.2933959960938	2	569.29857	1136.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.076	1	44.977	44.477	45.477	-0.099445								0	0	0	0.48579	1	4248	4248		54.776	1.4249	1		+		38055	20160	26093	26147	43636	43636					0.01975922638052907
LDDVQPYEP	9	Unmodified	_LDDVQPYEP_					0	0	0			REV__ENST00000475582.5_1_2:27591484-27592470:-|nuORF	REV__ENST00000475582.5_1_2:27591484-27592470:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3009033203125	2	538.250754	1074.48696	-1.008	-0.00054255	-2.9158	-0.0015694	-3.9237	-0.002112	538.2493619911578	56.805	0.10416	56.641	56.571	56.675	-0.16432					4	2	2	0	0	0	0.024457	1	6309	6309		10.265	0	1	67221	+		38056	22176	26094	26148	43637	43637					-0.047308502728583335
LDDYGYVQP	9	Unmodified	_LDDYGYVQP_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7658081054688	2	535.245472	1068.47639	-0.55741	-0.00029835	-2.4825	-0.0013287	-3.0399	-0.0016271	535.2440716004502	49.5	0.40709	49.349	49.113	49.52	-0.1512					16	10	2	0	0	0	0.024294	1	5075	5075		45.952	20.502	1	177770	+		38057	24262	26095	26149	43638	43638					-0.05510832927279807
LDDYGYVQP	9	Unmodified	_LDDYGYVQP_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.76416015625	2	535.245472	1068.47639	-0.45595	-0.00024404	-2.1681	-0.0011605	-2.6241	-0.0014045	535.2442450811842	49.346	0.64808	49.246	48.992	49.64	-0.1008					27	16	2	0	0	0	0.024381	1	4928	4928		37.159	12.956	1	457530	+		38058	24262	26095	26149	43639	43639					-0.05510832927279807
LDDYGYVQP	9	Unmodified	_LDDYGYVQP_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.245472	1068.47639	-0.34406	-0.00018415	-2.6319	-0.0014087	-2.9759	-0.0015928	535.2439743453275	49.445	0.49233	49.263	49.077	49.569	-0.18152	-0.035646	-0.0001907	NaN	37.159	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416720	+		38059	24262	26095	26149							-0.05510832927279807
LDEAKVKAI	9	Unmodified	_LDEAKVKAI_					0	0	0			REV__nc|ENSG00000196091|Q00872-5|MYBPC1	REV__nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7964172363281	2	493.797675	985.580796	-0.51706	-0.00025532	-1.0372	-0.00051216	-1.5542	-0.00076748	493.79701601114726	62.482	0.39756	62.545	62.331	62.728	0.062767					17	9	2	0	0	0	0.2101	1	7194	7194		87.696	12.653	1	1828300	+		38060	28125	26096	26150	43640	43640					0.08742913620085346
LDEAKVKAI	9	Unmodified	_LDEAKVKAI_					0	0	0			REV__nc|ENSG00000196091|Q00872-5|MYBPC1	REV__nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.797675	985.580796	-0.64541	-0.0003187	-0.78856	-0.00038939	-1.434	-0.00070809	493.79701922273296	62.541	0.39389	62.541	62.335	62.729	0	0.00093231	-1.5893E-05	NaN	87.696	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1125900	+		38061	28125	26096	26150							0.08742913620085346
LDEAKVKAI	9	Unmodified	_LDEAKVKAI_					0	0	0			REV__nc|ENSG00000196091|Q00872-5|MYBPC1	REV__nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.797675	985.580796	-1.1465	-0.00056614	-0.64966	-0.0003208	-1.7962	-0.00088694	493.7973232038337	62.773	0.3251	62.533	62.37	62.695	-0.23926	-0.0061457	0.00012129	NaN	87.696	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2193300	+		38062	28125	26096	26150							0.08742913620085346
LDEDQNPIK	9	Unmodified	_LDEDQNPIK_					0	0	0		nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN	nc|ENSG00000129460|Q8NEJ9-2|NGDN	nc|ENSG00000129460|Q8NEJ9-2|NGDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.8081665039062	2	536.269478	1070.5244	-0.98404	-0.00052771	0.43959	0.00023574	-0.54445	-0.00029197	536.2693806306856	31.832	0.54542	31.674	31.489	32.035	-0.15772					20	12	2	0	0	0	0.023454	1	2124	2124		62.107	0	1	43706			38063	4348	26097	26151	43641	43641					-0.008037590072490275
LDEEHPHF	8	Unmodified	_LDEEHPHF_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7335815429688	2	512.230156	1022.44576	0.47882	0.00024527	4.1612	0.0021315	4.64	0.0023768	512.7331053512468	59.237	1.2333	58.995	58.422	59.655	-0.24165					91	30	5	0	0	0	0.65272	1	6528	6528		71.378	5.5747	1	3180300	+		38064	36591	26098	26152	43642	43642					-0.06456566521660534
LDEEVTGEVD	10	Unmodified	_LDEEVTGEVD_					0	0	0			REV__ENST00000559111.1_1_15:99797871-99798159:+|nuORF	REV__ENST00000559111.1_1_15:99797871-99798159:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.7671508789062	2	553.248408	1104.48226	-0.87434	-0.00048373	-0.12324	-6.818E-05	-0.99758	-0.00055191	553.2476758977399	61.444	0.24953	61.267	61.122	61.372	-0.1761					8	5	2	0	0	0	0.03519	1	6893	6893		19.104	0	1	76477	+		38065	35109	26099	26153	43643	43643					-0.06579779206253988
LDEEWRAPQ	9	Unmodified	_LDEEWRAPQ_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.8327026367188	2	572.275095	1142.53564	0.93472	0.00053492	-1.5529	-0.00088866	-0.61814	-0.00035374	572.2747130326104	74.174	0.38309	74.174	73.999	74.382	0					16	8	3	0	0	0	0.024541	1	9071	9071		11.511	0	1	133230			38066	4282	26100	26154	43644	43644					-0.029929369131195926
LDEFAKLFI	9	Unmodified	_LDEFAKLFI_					0	0	0			REV__ENST00000608437.5_1_7:124532851-124555666:-|nuORF	REV__ENST00000608437.5_1_7:124532851-124555666:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3092041015625	2	548.307875	1094.6012	-0.63397	-0.00034761	0.27737	0.00015208	-0.3566	-0.00019553	548.30787158307	101.57	1.6212	101.58	101.09	102.71	0.0090332					100	37	4	0	0	0	0.35646	1	13020	13020		68.787	0	1	2768400	+		38067	35969	26101	26155	43645	43645					0.05768084279884533
LDEGRYGVY	9	Unmodified	_LDEGRYGVY_					0	0	0		ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2586669921875	2	536.258914	1070.50327	-1.2288	-0.00065896	1.1564	0.00062011	-0.072452	-3.8853E-05	536.2595203467149	53.511	0.91032	53.364	52.91	53.821	-0.14723					89	24	5	0	0	0	0.50848	3	5762	5752;5762;5774		58.782	9.3404	1	6498200			38068	4098	26102	26156	43646;43647;43648	43647					-0.029157243160852886
LDEIPRHTF	9	Unmodified	_LDEIPRHTF_					0	0	0			REV__nc|ENSG00000166323|Q8NCR3-2|MFI	REV__nc|ENSG00000166323|Q8NCR3-2|MFI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.320556640625	2	564.29583	1126.57711	0.23044	0.00013004	-1.2031	-0.00067893	-0.9727	-0.00054889	564.2943695677014	103.86	0.98055	103.69	103	103.98	-0.16791					34	23	3	0	0	0	0.024487	1	12887	12887		24.203	0	1	148940	+		38069	26000	26103	26157	43649	43649					0.018882438462242135
LDEKDAHKELA	11	Unmodified	_LDEKDAHKELA_					0	0	0			REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.554931640625	3	423.55422	1267.64083	0.20947	8.872E-05	0.73559	0.00031156	0.94506	0.00040028	423.5545790680213	24.148	1.2094	23.933	23.599	24.809	-0.2151					61	27	4	0	0	0	0.95317	1	1019	1019		47.228	0	1	4738600	+		38070	20713	26104	26158	43650	43650					0.017715594926812628
LDELILQT	8	Unmodified	_LDELILQT_					0	0	0		ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2955627441406	2	472.768583	943.522613	-1.5297	-0.00072321	3.1167	0.0014735	1.587	0.00075027	472.76992057701756	40.627	0.32322	40.397	40.196	40.52	-0.23029					11	8	2	0	0	0	0.027866	1	3528	3528		76.847	18.065	1	150490			38071	5812	26105	26159	43651	43651					0.04859231974796785
LDELLKLEG	9	Unmodified	_LDELLKLEG_					0	0	0		ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2957763671875	2	515.294965	1028.57538	-0.26039	-0.00013418	0.92403	0.00047615	0.66364	0.00034197	515.2956224158916	73.619	0.82855	73.342	72.926	73.755	-0.2769					77	20	5	0	0	0	0.01896	2	8660	8660;8672		150.36	19.33	1	13984000			38072	3563	26106	26160	43652;43653	43652					0.06223190037621862
LDELLKLEG	9	Unmodified	_LDELLKLEG_					0	0	0		ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2955322265625	2	515.294965	1028.57538	-0.2986	-0.00015387	0.98839	0.00050931	0.68979	0.00035544	515.2956771851015	73.628	0.66979	73.363	73.017	73.687	-0.26479					57	16	4	0	0	0	0.12914	3	8681	8658;8681;8693		104.06	8.2416	1	14291000			38073	3563	26106	26160	43654;43655;43656	43655					0.06223190037621862
LDELLKLEG	9	Unmodified	_LDELLKLEG_					0	0	0		ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2957153320312	2	515.294965	1028.57538	-0.26719	-0.00013768	0.8854	0.00045624	0.61822	0.00031856	515.2956267735008	73.368	0.83951	73.178	72.844	73.683	-0.19026					74	20	5	0	0	0	0.1158	2	8638	8615;8638		107.01	19.311	1	13528000			38074	3563	26106	26160	43657;43658	43658					0.06223190037621862
LDELMLNSH	9	Unmodified	_LDELMLNSH_					0	0	0			REV__nc|ENSG00000159023|P11171-2|EPB41	REV__nc|ENSG00000159023|P11171-2|EPB41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7988891601562	2	536.260599	1070.50665	-0.35629	-0.00019106	-4.1105	-0.0022043	-4.4668	-0.0023954	536.257933389452	49.942	0.711	49.662	49.359	50.07	-0.27977					30	18	3	0	0	0	0.024447	1	5086	5086		32.812	1.2826	1	363160	+		38075	25228	26107	26161	43659	43659					-0.025787975337152602
LDELPEGI	8	Unmodified	_LDELPEGI_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.242919921875	2	443.231833	884.449113	-1.5405	-0.00068282	-4.1282	-0.0018298	-5.6688	-0.0025126	443.2295937851043	38.42	0.42736	38.447	38.264	38.691	0.027275					15	11	2	0	0	0	0.027866	1	3172	3172		38.806	4.6336	1	121600	+		38076	27755;27620	26108	26162	43660	43660					0.002266835323553096
LDELPTIS	8	Unmodified	_LDELPTIS_					0	0	0			REV__nc|ENSG00000057608|P50395-2|GDI2	REV__nc|ENSG00000057608|P50395-2|GDI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.2873840332031	2	444.239658	886.464763	-0.085542	-3.8001E-05	-0.90674	-0.00040281	-0.99229	-0.00044081	444.2392072907933	35.61	0.36615	35.423	35.22	35.587	-0.18675					11	9	2	0	0	0	0.027866	1	2676	2676		47.916	0	1	166410	+		38077	20222	26109	26163	43661	43661					0.01698970049392301
LDELRSLLH	9	Unmodified	_LDELRSLLH_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3111572265625	2	548.31148	1094.60841	-1.2947	-0.00070992	0.68342	0.00037473	-0.61132	-0.00033519	548.3119799425222	55.988	1.3853	56.085	55.744	57.13	0.097893					116	38	5	0	0	0	0.11092	1	6142	6142		108.09	8.7125	1	29822000	+		38078	25290	26110	26164	43662	43662					0.06488816880346349
LDELSSPE	8	Unmodified	_LDELSSPE_					0	0	0			REV__ENSG00000181408|ENST00000313135|UTS2R	REV__ENSG00000181408|ENST00000313135|UTS2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2247619628906	2	445.211098	888.407643	-0.45694	-0.00020343	2.4697	0.0010995	2.0128	0.00089611	445.21204766586544	30.042	0.50949	29.798	29.612	30.122	-0.24415					18	11	2	0	0	0	0.027866	1	1926	1926		11.511	0	1	132040	+		38079	27403	26111	26165	43663	43663					-0.04102497226995183
LDELVALVN	9	Unmodified	_LDELVALVN_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2621154785156	2	493.281857	984.549162	0.70766	0.00034908	-0.55541	-0.00027397	0.15226	7.5106E-05	493.28133541445175	71.105	1.0431	70.891	70.606	71.65	-0.21425					51	24	3	0	0	0	0.024374	1	8341	8341		32.812	9.7699	1	1980700			38080	3455	26112	26166	43664	43664					0.05626920866131968
LDENHGGLLK	10	Unmodified	_LDENHGGLLK_					0	0	0			REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2915649414062	2	548.293288	1094.57202	-0.10431	-5.7194E-05	-3.411	-0.0018702	-3.5153	-0.0019274	548.2912874589512	72.393	1.0181	72.393	72.054	73.072	0					57	24	4	0	0	0	0.54901	1	8799	8799		82.75	3.0379	1	8457700	+		38081	23774	26113	26167	43665	43665					0.028519399836113735
LDENHGGLLK	10	Unmodified	_LDENHGGLLK_					0	0	0			REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.2915649414062	2	548.293288	1094.57202	0.15623	8.5657E-05	-3.8392	-0.002105	-3.6829	-0.0020193	548.2910944064284	72.728	1.0955	72.446	72.062	73.157	-0.28124					59	26	4	0	0	0	0.83673	1	8809	8809		58.23	3.4536	1	7828100	+		38082	23774	26113	26167	43666	43666					0.028519399836113735
LDEQASHIQ	9	Unmodified	_LDEQASHIQ_					0	0	0		ENSG00000177875|ENST00000316554|CCDC184	ENSG00000177875|ENST00000316554|CCDC184	ENSG00000177875|ENST00000316554|CCDC184	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8237915039062	2	520.753995	1039.49344	-0.76704	-0.00039944	-3.7418	-0.0019485	-4.5088	-0.002348	520.7520824839448	82.263	0.46378	82.263	82.072	82.535	0					14	10	2	0	0	0	0.024397	1	10290	10290		31.53	7.0106	1	100470			38083	8773	26114	26168	43667	43667					-0.024729123214683568
LDEQASHIQ	9	Unmodified	_LDEQASHIQ_					0	0	0		ENSG00000177875|ENST00000316554|CCDC184	ENSG00000177875|ENST00000316554|CCDC184	ENSG00000177875|ENST00000316554|CCDC184	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.753995	1039.49344	0.25761	0.00013415	-2.8359	-0.0014768	-2.5783	-0.0013426	520.752158327883	82.285	0.38966	82.065	81.914	82.304	-0.22015	-0.099292	0.00065294	NaN	31.53	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64667			38084	8773	26114	26168							-0.024729123214683568
LDEQSLPQL	9	Unmodified	_LDEQSLPQL_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|115|2|anti-sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|115|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8099365234375	2	521.774396	1041.53424	-0.43649	-0.00022775	-2.3498	-0.001226	-2.7863	-0.0014538	521.7704697888964	53.871	0.28346	53.871	53.726	54.01	0					15	7	3	0	0	0	0.020937	1	5831	5831		98.629	21.312	1	146950	+		38085	36103	26115	26169	43668	43668					0.015134289981688198
LDERAKVL	8	Unmodified	_LDERAKVL_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2633972167969	2	472.282192	942.549831	0.30993	0.00014637	-1.912	-0.00090302	-1.6021	-0.00075664	472.281053458331	62.645	0.90939	62.708	62.401	63.311	0.062767					47	22	3	0	0	0	0.027866	1	7191	7191		42.396	0	1	2229700			38086	5147	26116	26170	43669	43669					0.0762576030585933
LDERGHPN	8	Unmodified	_LDERGHPN_					0	0	0		nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1;nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.268310546875	2	469.227948	936.441343	-0.98725	-0.00046324	1.3001	0.00061005	0.31287	0.00014681	469.2284475678249	60.528	0.56292	60.607	60.392	60.955	0.078884					28	14	3	0	0	0	0.027866	1	6870	6870		21.96	0	1	107450			38087	18743	26117	26171	43670	43670					-0.02942030944564067
LDERSGLG	8	Unmodified	_LDERSGLG_					0	0	0			REV__ENSG00000006283|ENST00000359106|CACNA1G	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.71990966796875	2	423.719424	845.424296	-0.55794	-0.00023641	1.6943	0.0007179	1.1364	0.00048149	423.7199295693308	39.866	0.8627	39.89	39.562	40.424	0.023727					54	23	3	0	0	0	0.87148	1	3416	3416		53.351	0.41475	1	2535000	+		38088	19828	26118	26172	43671	43671					-0.004599515503628027
LDETEMVKP	9	Unmodified	_LDETEMVKP_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3079833984375	2	531.262807	1060.51106	0.28513	0.00015148	2.1054	0.0011185	2.3906	0.00127	531.2639338602684	58.71	0.29095	58.801	58.635	58.926	0.091217					10	7	2	0	0	0	0.024292	1	6567	6567		40.778	16.259	1	175870	+		38089	28831	26119	26173	43672	43672					-0.016773331108424827
LDETPLNN	8	Unmodified	_LDETPLNN_					0	0	0			REV__C2CD3|p.K314E|1|0.05|ENSG00000168014|chr11:74138735-74138735|T/C|missense_variant	REV__C2CD3|p.K314E|1|0.05|ENSG00000168014|chr11:74138735-74138735|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.23553466796875	2	458.224539	914.434526	-0.59735	-0.00027372	2.3131	0.0010599	1.7158	0.0007862	458.22560377583153	22.601	0.88068	22.416	21.811	22.692	-0.18539					21	18	2	0	0	0	0.027866	1	779	779		47.916	0	1	39918	+		38090	19230	26120	26174	43673	43673					-0.026113886158100286
LDETPLNN	8	Unmodified	_LDETPLNN_					0	0	0			REV__C2CD3|p.K314E|1|0.05|ENSG00000168014|chr11:74138735-74138735|T/C|missense_variant	REV__C2CD3|p.K314E|1|0.05|ENSG00000168014|chr11:74138735-74138735|T/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.224539	914.434526	0.43129	0.00019763	2.0244	0.00092764	2.4557	0.0011253	458.22547239751646	22.39	0.60127	22.201	21.911	22.512	-0.18894	-0.10762	-0.00010211	NaN	47.916	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34297	+		38091	19230	26120	26174							-0.026113886158100286
LDEVKCAWKN	10	Unmodified	_LDEVKCAWKN_					0	0	0			REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.5363464355469	3	402.537624	1204.59104	0.51166	0.00020596	-3.4135	-0.001374	-2.9018	-0.0011681	402.5362114269767	32.674	1.0761	32.437	31.954	33.03	-0.23666					44	25	3	0	0	0	1.0074	1	2285	2285		45.022	1.3714	1	3852400	+		38092	36581	26121	26175	43674	43674					-0.003068467169896394
LDFARKLPV	9	Unmodified	_LDFARKLPV_					0	0	0			REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP	REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2774658203125	2	529.821484	1057.62842	-0.49317	-0.00026129	0.77881	0.00041263	0.28563	0.00015133	529.8216249504503	57.957	0.49837	58.048	57.835	58.333	0.091217					29	13	3	0	0	0	0.02435	1	6441	6441		34.173	0	1	901130	+		38093	22068	26122	26176	43675	43675					0.10190612610927019
LDFDKEWD	8	Unmodified	_LDFDKEWD_					0	0	0			REV__ENST00000444377.5_1_1:32832225-32834867:-|nuORF	REV__ENST00000444377.5_1_1:32832225-32834867:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.759033203125	2	534.237647	1066.46074	0.26501	0.00014158	-4.3838	-0.002342	-4.1188	-0.0022004	534.235247166264	58.786	0.39706	58.544	58.341	58.738	-0.24166					15	9	2	0	0	0	0.027866	1	6470	6470		18.324	4.5491	1	343070	+		38094	25288	26123	26177	43676	43676					-0.06983119444339536
LDFDPHPEL	9	Unmodified	_LDFDPHPEL_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7645874023438	2	541.761289	1081.50803	-0.45586	-0.00024697	-2.7952	-0.0015143	-3.2511	-0.0017613	541.7589089978726	49.653	0.64771	49.653	49.437	50.084	0					29	17	2	0	0	0	0.024294	1	5135	5135		37.159	0	1	247480	+		38095	25956	26124	26178	43677	43677					-0.02946840173331111
LDFFDDHDIWH	11	Unmodified	_LDFFDDHDIWH_					0	0	0		ENST00000498152.1_1_3:113344918-113346552:+|nuORF;ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2	ENST00000498152.1_1_3:113344918-113346552:+|nuORF	ENST00000498152.1_1_3:113344918-113346552:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2723693847656	3	487.214086	1458.62043	-0.45993	-0.00022408	4.3418	0.0021154	3.8818	0.0018913	487.5503328440771	21.495	0.42979	21.405	21.207	21.636	-0.090094					13	8	2	0	0	0	0.024782	1	637	637		14.086	0	1	28968			38096	1493	26125	26179	43678	43678					-0.09053611167155395
LDFGATREY	9	Unmodified	_LDFGATREY_					0	0	0		ENST00000478406.5_1_1:227171537-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-2|COQ8A;nc|ENSG00000163050|Q8NI60-4|COQ8A;ENST00000485462.5_1_1:227165121-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-3|COQ8A;ENSG00000163050|ENST00000366777|COQ8A	ENST00000478406.5_1_1:227171537-227174435:+|nuORF	ENST00000478406.5_1_1:227171537-227174435:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.25927734375	2	536.258914	1070.50327	-0.53837	-0.00028871	0.46769	0.0002508	-0.070679	-3.7902E-05	536.2591380997773	53.392	0.96784	53.392	52.974	53.942	0					78	26	4	0	0	0	0.42604	1	5779	5779		64.207	0	1	6536600			38097	15148	26126	26180	43679	43679					-0.029157243160852886
LDFHINKLE	9	Unmodified	_LDFHINKLE_					0	0	0		ENST00000528049.2_1_15:32791963-32792224:-|nuORF	ENST00000528049.2_1_15:32791963-32792224:-|nuORF	ENST00000528049.2_1_15:32791963-32792224:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.7915649414062	2	564.806031	1127.59751	-0.20858	-0.00011781	3.0588	0.0017276	2.8502	0.0016098	564.8077281630893	100.34	0.39586	100.34	100.14	100.53	0					18	8	3	0	0	0	0.024418	1	12857	12857		37.812	0	1	182530			38098	16176	26127	26181	43680	43680					0.03881414506076908
LDFLQKRK	8	Unmodified	_LDFLQKRK_					0	0	0		ENST00000490602.5_1_13:37598533-37607608:-|nuORF;nc|ENSG00000102710|Q8NEM7-2|SUPT20H;ENSG00000102710|ENST00000350612|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H	ENST00000490602.5_1_13:37598533-37607608:-|nuORF	ENST00000490602.5_1_13:37598533-37607608:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	524.319109	1046.62366	-0.72053	-0.00037779	-1.5454	-0.00081027	-2.2659	-0.0011881	524.318101420104	27.584	0.42351	27.416	27.186	27.61	-0.16816					23	9	3	0	0	0	0.027866	1	1542	1542		55.504	9.5523	1	181540			38099	2421	26128	26182	43681	43681					0.10221728468172842
LDFLYDLY	8	Unmodified	_LDFLYDLY_					0	0	0		nc|ENSG00000154914|Q70EL4-3|USP43;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43;nc|ENSG00000154914|Q70EL4-2|USP43	nc|ENSG00000154914|Q70EL4-3|USP43	nc|ENSG00000154914|Q70EL4-3|USP43	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2606811523438	2	531.263133	1060.51171	0.24846	0.000132	-3.8396	-0.0020398	-3.5911	-0.0019078	531.261095852894	104.09	0.53796	103.93	103.64	104.17	-0.16791					25	13	3	0	0	0	0.75307	1	12939	12939		62.978	8.2138	1	217080			38100	6442	26129	26183	43682	43682					-0.016121703994713243
LDFMVVDIN	9	Unmodified	_LDFMVVDIN_					0	0	0			REV__ENST00000372134.5_1_10:85912629-85912848:+|nuORF	REV__ENST00000372134.5_1_10:85912629-85912848:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7867431640625	2	533.267893	1064.52123	-0.63568	-0.00033899	1.9673	0.0010491	1.3316	0.00071012	533.2683559587683	45.933	0.22013	45.672	45.557	45.777	-0.26118					7	5	2	0	0	0	0.024438	1	4371	4371		52.937	15.125	1	104730	+		38101	31192	26130	26184	43683	43683					-0.008447253855820236
LDFPLGLLI	9	Unmodified	_LDFPLGLLI_					0	0	0			REV__nc|ENSG00000102539|O43193-2|MLNR	REV__nc|ENSG00000102539|O43193-2|MLNR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7874755859375	2	500.807511	999.600469	-0.71444	-0.0003578	-3.6261	-0.001816	-4.3406	-0.0021738	500.80542035851255	60.676	0.63022	60.676	60.366	60.996	0					39	16	3	0	0	0	0.024386	1	6943	6943		33.516	8.0654	1	876740	+		38102	21314	26131	26185	43684	43684					0.10065289630870211
LDFPPWVST	9	Unmodified	_LDFPPWVST_					0	0	0			REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.32666015625	2	531.26875	1060.52295	1.1525	0.00061231	-0.82596	-0.00043881	0.32658	0.0001735	531.2681518898328	74.402	0.75102	74.402	74.084	74.835	0					61	17	5	0	0	0	0.024457	1	9121	9121		29.15	2.3535	1	1260200	+		38103	34378	26132	26186	43685	43685					-0.004893483053365344
LDFPVFLF	8	Unmodified	_LDFPVFLF_					0	0	0		chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|59	chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|59	chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|59	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7668151855469	2	499.273304	996.532055	0.34851	0.000174	1.9644	0.00098075	2.3129	0.0011548	499.2743073705864	40.331	0.88416	40.331	39.951	40.835	0					40	24	3	0	0	0	0.027866	1	3572	3572		28.254	3.7351	1	6298400			38104	294	26133	26187	43686	43686					0.03365045051009474
LDFSCSDFKD	10	Unmodified	_LDFSCSDFKD_					0	0	0			REV__nc|ENSG00000196091|Q00872-5|MYBPC1	REV__nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.7718505859375	2	588.747521	1175.48049	-0.97367	-0.00057324	3.6417	0.002144	2.668	0.0015708	588.7496007963929	32.782	0.40295	32.617	32.436	32.839	-0.16565					16	9	2	0	0	0	0.03519	1	2281	2281		46.457	12.284	1	329670	+		38105	28125	26134	26188	43687	43687					-0.1002311149588877
LDFSRETF	8	Unmodified	_LDFSRETF_					0	0	0			REV__nc|ENSG00000116161|Q9HB71-3|CACYBP	REV__nc|ENSG00000116161|Q9HB71-3|CACYBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7998962402344	2	507.748182	1013.48181	-0.49551	-0.00025159	2.1185	0.0010757	1.623	0.00082408	507.7494320904062	31.353	0.56641	31.201	30.928	31.495	-0.15231					25	14	2	0	0	0	0.027866	1	2051	2051		45.952	0	1	148840	+		38106	22262	26135	26189	43688	43688					-0.024391093448116408
LDFTKCLLL	9	Unmodified	_LDFTKCLLL_					0	0	0			REV__IDH3A|p.R115C|1|0.29|ENSG00000166411|chr15:78161634-78161634|C/T|missense_variant	REV__IDH3A|p.R115C|1|0.29|ENSG00000166411|chr15:78161634-78161634|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2551879882812	2	533.304278	1064.594	-0.54839	-0.00029246	3.0396	0.001621	2.4912	0.0013286	533.3057872481825	52.993	0.41636	52.846	52.607	53.023	-0.14723					18	10	2	0	0	0	0.024397	1	5672	5672		39.253	5.7372	1	113200	+		38107	36142	26136	26190	43689	43689					0.06429028407842452
LDGAPLIAI	9	Unmodified	_LDGAPLIAI_					0	0	0		nc|ENSG00000167220|Q9H0R4-2|HDHD2;ENST00000588183.5_1_18:44635055-44662674:-|nuORF;ENSG00000167220|ENST00000300605|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	nc|ENSG00000167220|Q9H0R4-2|HDHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.76739501953125	2	441.768386	881.522219	0.10055	4.4418E-05	-1.228	-0.00054249	-1.1275	-0.00049807	441.76794852794825	102.93	1.5122	102.8	102.45	103.96	-0.12723					102	35	5	0	0	0	0.88411	1	12845	12845		33.516	0	1	19625000			38108	7662	26137	26191	43690	43690					0.07671857045602337
LDGEILKK	8	Unmodified	_LDGEILKK_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.6570739746094	2	458.279118	914.543683	0.10745	4.9243E-05	-0.14113	-6.4677E-05	-0.033678	-1.5434E-05	458.27905156784436	59.972	0.51955	59.796	59.478	59.998	-0.1761					21	13	2	0	0	0	0.027866	1	6618	6618		12.959	0	1	209420			38109	10468	26138	26192	43691	43691					0.08299242074338053
LDGEILKK	8	Unmodified	_LDGEILKK_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.279118	914.543683	1.4443	0.0006619	-0.88927	-0.00040754	0.55505	0.00025437	458.2785685387521	59.829	0.58396	59.829	59.52	60.104	0	0.0066445	-0.00086017	NaN	18.324	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1375400			38110	10468	26138	26192							0.08299242074338053
LDGEILKK	8	Unmodified	_LDGEILKK_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	458.279118	914.543683	-0.13035	-5.9739E-05	0.79258	0.00036322	0.66223	0.00030349	458.27936553253727	60.048	0.70903	59.848	59.577	60.286	-0.20016	0.025842	0.00068136	NaN	18.324	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1162000			38111	10468	26138	26192							0.08299242074338053
LDGEILKK	8	Unmodified	_LDGEILKK_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	458.279118	914.543683	-0.041224	-1.8892E-05	0.70858	0.00032473	0.66736	0.00030584	458.2793959428213	59.719	0.592	59.805	59.464	60.056	0.085682	-0.017284	0.00060436	NaN	18.324	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	919650			38112	10468	26138	26192							0.08299242074338053
LDGEILKK	8	Unmodified	_LDGEILKK_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.279118	914.543683	-0.14614	-6.6974E-05	0.1649	7.5572E-05	0.018764	8.5989E-06	458.27918145220207	60.082	0.40958	59.833	59.648	60.058	-0.24842	0.011138	0.00010605	NaN	18.324	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182170			38113	10468	26138	26192							0.08299242074338053
LDGEKKKKGK	10	Unmodified	_LDGEKKKKGK_					0	0	0			REV__ENSG00000117899|ENST00000261758|MESD	REV__ENSG00000117899|ENST00000261758|MESD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.8327026367188	2	565.84823	1129.68191	-0.047394	-2.6818E-05	-2.332	-0.0013196	-2.3794	-0.0013464	565.8470120888671	54.007	0.17579	53.761	53.687	53.862	-0.2453					7	5	2	0	0	0	0.03519	1	5685	5685		24.519	3.5723	1	138130	+		38114	22379	26139	26193	43692	43692					0.12225365322797188
LDGEMMAYN	9	Unmodified	_LDGEMMAYN_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3065795898438	2	522.21226	1042.40997	-0.99094	-0.00051748	1.1141	0.00058177	0.12312	6.4294E-05	522.212693848562	53.4	0.72889	53.253	52.91	53.639	-0.14723					44	19	3	0	0	0	0.024405	1	5703	5703		35.618	2.8059	1	1692100			38115	8463	26140	26194	43693	43693					-0.10954108085184089
LDGEMMAYN	9	Unmodified	_LDGEMMAYN_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.21226	1042.40997	-0.52488	-0.0002741	0.82115	0.00042881	0.29627	0.00015472	522.2125424692493	53.419	0.47431	53.292	53.066	53.54	-0.12705	0.0044554	0.0002007	NaN	35.618	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631940			38116	8463	26140	26194							-0.10954108085184089
LDGEMMAYN	9	Unmodified	_LDGEMMAYN_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.21226	1042.40997	0.074565	3.8939E-05	0.086706	4.5279E-05	0.16127	8.4218E-05	522.2121597437075	53.623	0.53104	53.378	53.125	53.657	-0.2453	0.090416	-0.00056637	NaN	35.618	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	680630			38117	8463	26140	26194							-0.10954108085184089
LDGEMMAYN	9	Unmodified	_LDGEMMAYN_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.21226	1042.40997	-0.11121	-5.8075E-05	0.23625	0.00012337	0.12504	6.53E-05	522.2123200805507	53.528	0.57021	53.33	53.049	53.619	-0.19739	0.042742	-0.00041018	NaN	35.618	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	741370			38118	8463	26140	26194							-0.10954108085184089
LDGGIRTH	8	Unmodified	_LDGGIRTH_					0	0	0			REV__nc|ENSG00000198590|Q8IVJ8-2|APRG1	REV__nc|ENSG00000198590|Q8IVJ8-2|APRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7480773925781	2	434.735409	867.456264	-0.4735	-0.00020585	-2.0802	-0.00090435	-2.5537	-0.0011102	434.732564170637	65.553	0.31308	65.28	65.017	65.33	-0.27282					13	8	3	0	0	0	0.027866	1	7709	7709		60.972	5.4677	1	582970	+		38119	37067	26141	26195	43694	43694					0.01723460923415132
LDGGRLFDLI	10	Unmodified	_LDGGRLFDLI_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant;REV__ENSG00000177189|ENST00000379565|RPS6KA3	REV__ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.81494140625	2	559.813856	1117.61316	-0.54513	-0.00030517	3.5584	0.0019921	3.0133	0.0016869	559.8157653628313	80.904	2.796	80.904	79.911	82.707	0					244	67	6	0	0	0	0.59716	1	10149	10149		77.318	6.0219	1	11331000	+		38120	22369;27089	26142	26196	43695	43695					0.05905701023084475
LDGGRLFDLI	10	Unmodified	_LDGGRLFDLI_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant;REV__ENSG00000177189|ENST00000379565|RPS6KA3	REV__ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8153686523438	2	559.813856	1117.61316	-0.92953	-0.00052036	3.9468	0.0022095	3.0173	0.0016891	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.66532	1	10107	10107		69.628	0.8408	1	11139000	+		38121	22369;27089	26142	26196	43696	43696					0.05905701023084475
LDGGRLFDLI	10	Unmodified	_LDGGRLFDLI_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant;REV__ENSG00000177189|ENST00000379565|RPS6KA3	REV__ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8150634765625	2	559.813856	1117.61316	-0.85269	-0.00047735	3.8179	0.0021373	2.9652	0.00166	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.57594	3	10067	10030;10054;10067		79.713	5.4575	1	10426000	+		38122	22369;27089	26142	26196	43697;43698;43699	43699					0.05905701023084475
LDGGRLFDLI	10	Unmodified	_LDGGRLFDLI_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant;REV__ENSG00000177189|ENST00000379565|RPS6KA3	REV__ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8153686523438	2	559.813856	1117.61316	-0.4095	-0.00022924	3.3497	0.0018752	2.9402	0.001646	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.48123	1	9726	9726		90.37	5.4543	1	31806000	+		38123	22369;27089	26142	26196	43700	43700					0.05905701023084475
LDGKLKAL	8	Unmodified	_LDGKLKAL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	429.27667236328125	2	429.276378	856.538203	0.30953	0.00013288	-0.28551	-0.00012256	0.024028	1.0314E-05	429.27622469909545	43.008	1.3736	42.896	42.614	43.988	-0.11253					83	36	5	0	0	0	0.26064	4	3910	3899;3910;3923;3936		128.86	18.524	1	10336000	+		38124	23340	26143	26197	43701;43702;43703;43704	43702					0.1041956328251672
LDGKLKAL	8	Unmodified	_LDGKLKAL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	429.27667236328125	2	429.276378	856.538203	-0.010114	-4.3416E-06	-0.028484	-1.2228E-05	-0.038598	-1.6569E-05	429.2763251223275	43.173	1.3085	42.935	42.639	43.947	-0.23736					80	34	5	0	0	0	0.1848	4	3921	3911;3921;3933;3945		143.02	24.682	1	11402000	+		38125	23340	26143	26197	43705;43706;43707;43708	43706					0.1041956328251672
LDGKLKAL	8	Unmodified	_LDGKLKAL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	429.276611328125	2	429.276378	856.538203	-0.34912	-0.00014987	0.14506	6.2269E-05	-0.20406	-8.7599E-05	429.27638634205374	43.197	1.3586	42.971	42.675	44.033	-0.22597					88	36	4	0	0	0	0.26064	3	3921	3921;3933;3948		128.86	17.414	1	12088000	+		38126	23340	26143	26197	43709;43710;43711	43709					0.1041956328251672
LDGKVAVVN	9	Unmodified	_LDGKVAVVN_					0	0	0		nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;nc|ENSG00000134532|P35711-3|SOX5	nc|ENSG00000134532|P35711-2|SOX5	nc|ENSG00000134532|P35711-2|SOX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.31317138671875	2	457.768917	913.523281	-1.0623	-0.0004863	0.44411	0.0002033	-0.61822	-0.000283	457.76880860256546	44.61	0.56776	44.461	44.094	44.662	-0.1488					30	16	3	0	0	0	0.023817	1	4250	4250		42.396	10.441	1	579010			38127	4805	26144	26198	43712	43712					0.06306071414519465
LDGLLSAGLL	10	Unmodified	_LDGLLSAGLL_					0	0	0			REV__ENSG00000166987|ENST00000355673|MBD6	REV__ENSG00000166987|ENST00000355673|MBD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2758483886719	2	486.292225	970.569897	1.7288	0.00084068	3.5738	0.0017379	5.3026	0.0025786	486.2940332652554	19.484	0.34714	19.25	19.077	19.424	-0.23345					12	6	2	0	0	0	0.03519	1	391	391		35.618	3.6634	1	55924	+		38128	26094	26145	26199	43713	43713					0.08343511245811897
LDGLLSAGLL	10	Unmodified	_LDGLLSAGLL_					0	0	0			REV__ENSG00000166987|ENST00000355673|MBD6	REV__ENSG00000166987|ENST00000355673|MBD6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.292225	970.569897	0.80257	0.00039028	4.2875	0.002085	5.0901	0.0024753	486.2942731605276	19.497	0.44814	19.297	19.106	19.554	-0.2001	0.023413	0.0001604	NaN	35.618	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55345	+		38129	26094	26145	26199							0.08343511245811897
LDGLPCIVI	9	Unmodified	_LDGLPCIVI_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;ENST00000578955.1_1_18:19057140-19088617:+|nuORF	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7715148925781	2	471.770071	941.52559	-0.09875	-4.6587E-05	3.6988	0.001745	3.6001	0.0016984	471.7716667330411	40.034	1.7025	39.922	39.603	41.305	-0.11223					90	46	3	0	0	0	0.40179	1	3451	3451		65.803	9.0821	1	13385000			38130	5492	26146	26200	43714	43714					0.05248783827960324
LDGLVLQGL	9	Unmodified	_LDGLVLQGL_					0	0	0		ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1;ENST00000439215.1_1_1:43369124-43369580:+|nuORF	ENST00000481365.5_1_22:18080958-18102283:-|nuORF	ENST00000481365.5_1_22:18080958-18102283:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.27874755859375	2	464.279118	926.543683	-0.76344	-0.00035445	1.173	0.00054462	0.40961	0.00019017	464.27964296126913	81.18	1.7865	81.049	80.195	81.982	-0.13075					76	43	3	0	0	0	0.17822	1	10105	10105		93.195	2.8256	1	3145900			38131	4496	26147	26201	43715	43715					0.07747242074333371
LDGMAARKRR	10	Unmodified	_LDGMAARKRR_					0	0	0		SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|66|2|anti-sense	SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|66|2|anti-sense	SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|66|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.7377319335938	2	587.335298	1172.65604	-0.97728	-0.00057399	-2.7656	-0.0016243	-3.7429	-0.0021983	587.333803231453	28.133	0.4346	27.981	27.808	28.243	-0.15195					15	10	2	0	0	0	0.03519	1	1609	1609		14.137	0	1	84977			38132	38018	26148	26202	43716	43716					0.07662192599514128
LDGNCYET	8	Unmodified	_LDGNCYET_					0	0	0			REV__nc|ENSG00000196115|Q6NVV9-5|ADAM5	REV__nc|ENSG00000196115|Q6NVV9-5|ADAM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.65679931640625	2	457.68165	913.348747	0.60359	0.00027625	0.78868	0.00036096	1.3923	0.00063722	457.682665932227	59.608	0.15519	59.432	59.361	59.516	-0.1761					5	3	2	0	0	0	0.027866	1	6605	6605		18.324	1.8513	1	30748	+		38133	37047	26149	26203	43717	43717					-0.11139296792975983
LDGPEEVECS	10	Unmodified	_LDGPEEVECS_					0	0	0		CON__P17690	CON__P17690	CON__P17690	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2640991210938	2	539.223879	1076.43321	-0.23846	-0.00012858	0.63389	0.00034181	0.39543	0.00021323	539.223937674371	69.798	0.5786	69.547	69.196	69.775	-0.25063					22	13	2	0	0	0	0.03519	1	8070	8070		25.574	0	1	64581		+	38134	522	26150	26204	43718	43718					-0.10195390766875789
LDGPHEDP	8	Unmodified	_LDGPHEDP_					0	0	0		nc|ENSG00000162946|Q9NRI5-6|DISC1;nc|ENSG00000162946|Q9NRI5-10|DISC1;nc|ENSG00000162946|Q9NRI5-4|DISC1;ENST00000468399.2_1_1:231765255-231837778:+|nuORF;nc|ENSG00000162946|Q9NRI5-7|DISC1;nc|ENSG00000162946|Q9NRI5-9|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;ENSG00000162946|ENST00000439617|DISC1;nc|ENSG00000162946|Q9NRI5-5|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-5|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2553405761719	2	440.195782	878.377011	-0.072136	-3.1754E-05	4.4	0.0019369	4.3278	0.0019051	440.19759103438105	37.084	2.943	37.116	36.059	39.002	0.032272					149	80	3	0	0	0	0.027866	1	3086	3086		68.485	10.673	1	467490			38135	18438;7016;18437	26151	26205	43719	43719					-0.06704230821378587
LDGRDINGR	9	Unmodified	_LDGRDINGR_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3117370605469	2	508.267604	1014.52066	1.4605	0.00074233	-4.0139	-0.0020401	-2.5534	-0.0012978	508.7654341032814	63.531	1.2898	63.585	63.054	64.343	0.054104					46	35	2	0	0	0	0.024344	1	7322	7322		30.318	0	1	216710			38136	6599	26152	26206	43720	43720					0.013976160095694468
LDGRTGPEQ	9	Unmodified	_LDGRTGPEQ_					0	0	0		ENST00000514363.1_1_1:1551978-1559178:+|nuORF;ENST00000378712.5_1_1:1551409-1560182:+|nuORF;ENST00000487053.5_1_1:1551409-1560182:+|nuORF	ENST00000514363.1_1_1:1551978-1559178:+|nuORF	ENST00000514363.1_1_1:1551978-1559178:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2637634277344	2	486.740888	971.467223	-0.58362	-0.00028407	-0.023929	-1.1647E-05	-0.60755	-0.00029572	486.7407033605813	30.453	0.62263	30.462	30.042	30.665	0.0086689					19	14	2	0	0	0	0.024209	1	1966	1966		39.253	2.0937	1	72867			38137	13246	26153	26207	43721	43721					-0.01965181492960255
LDGVSYTF	8	Unmodified	_LDGVSYTF_					0	0	0		nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4	nc|ENSG00000145113|Q99102-3|MUC4	nc|ENSG00000145113|Q99102-3|MUC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2510070800781	2	451.218726	900.422899	-0.30692	-0.00013849	-3.1285	-0.0014116	-3.4354	-0.0015501	451.2173930809973	35.371	0.37896	35.415	35.156	35.535	0.04406					15	9	2	0	0	0	0.027866	1	2663	2663		33.516	0	1	49921			38138	5792	26154	26208	43722	43722					-0.03129585639135257
LDGWKMKY	8	Oxidation (M)	_LDGWKM(Oxidation (M))KY_		LDGWKM(1)KY		LDGWKM(82)KY	0	0	1		ENST00000375614.6_1_11:111431100-111431226:+|nuORF	ENST00000375614.6_1_11:111431100-111431226:+|nuORF	ENST00000375614.6_1_11:111431100-111431226:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7357788085938	2	528.762778	1055.511	-1.2376	-0.00065442	3.7501	0.0019829	2.5125	0.0013285	528.7643176514784	60.589	0.43759	60.413	60.198	60.635	-0.1761					14	10	2	0	0	0	0.027866	1	6733	6733		82.305	13.518	1	188840			38139	13164	26155	26209	43723	43723		489			-0.014532883201809454
LDHDGAILDV	10	Unmodified	_LDHDGAILDV_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;ENST00000528322.6_1_17:27448739-27467390:-|nuORF	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7957153320312	2	534.272021	1066.52949	-0.743	-0.00039697	0.53847	0.00028769	-0.20453	-0.00010928	534.7751355959086	91.391	0.37984	91.378	91.238	91.618	-0.012383					11	8	2	0	0	0	0.03519	1	11554	11554		49.442	12.282	1	76826			38140	9889	26156	26210	43724	43724					-0.0011145514463350992
LDHGDVAFA	9	Unmodified	_LDHGDVAFA_					0	0	0		nc|ENSG00000103168|Q15572|TAF1C;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;ENST00000544090.5_1_16:84215181-84217023:-|nuORF;ENST00000564208.5_1_16:84215181-84220577:-|nuORF;ENST00000537450.5_1_16:84215181-84219087:-|nuORF;ENST00000564774.5_1_16:84215181-84218621:-|nuORF;ENST00000562330.5_1_16:84216837-84217023:-|nuORF	nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7515869140625	2	472.727249	943.439946	0.52744	0.00024933	3.1061	0.0014683	3.6335	0.0017177	472.7285150802316	33.294	2.1971	33.35	32.61	34.807	0.056568					130	56	3	0	0	0	0.024294	1	2413	2413		45.952	0	1	423470			38141	18138	26157	26211	43725	43725					-0.03403665033329162
LDHHSPVIK	9	Unmodified	_LDHHSPVIK_					0	0	0			REV__CCNB3|p.P29L|1|0.08|ENSG00000147082|chrX:50285249-50285249|C/T|missense_variant	REV__CCNB3|p.P29L|1|0.08|ENSG00000147082|chrX:50285249-50285249|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7647705078125	2	523.293091	1044.57163	-0.52224	-0.00027329	2.8825	0.0015084	2.3602	0.0012351	523.2942738146731	35.873	0.54027	35.918	35.699	36.24	0.04406					27	14	3	0	0	0	0.023635	1	2749	2749		76.774	23.423	1	596700	+		38142	19261	26158	26212	43726	43726					0.05112565054423612
LDHHSPVIK	9	Unmodified	_LDHHSPVIK_					0	0	0			REV__CCNB3|p.P29L|1|0.08|ENSG00000147082|chrX:50285249-50285249|C/T|missense_variant	REV__CCNB3|p.P29L|1|0.08|ENSG00000147082|chrX:50285249-50285249|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.293091	1044.57163	-0.89413	-0.00046789	3.861	0.0020204	2.9669	0.0015526	523.2951688122754	35.835	1.339	35.629	35.346	36.685	-0.20518	-0.089475	0.00055346	NaN	76.774	103	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19102000	+		38143	19261	26158	26212							0.05112565054423612
LDHIFSQLI	9	Unmodified	_LDHIFSQLI_					0	0	0			REV__SATB2|p.V636L|1|0.16|ENSG00000119042|chr2:199272507-199272507|C/A|missense_variant	REV__SATB2|p.V636L|1|0.16|ENSG00000119042|chr2:199272507-199272507|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3025512695312	2	543.303124	1084.5917	1.1837	0.00064312	-1.5178	-0.00082462	-0.33407	-0.0001815	543.3022819432259	74.333	1.4825	74.333	73.999	75.481	0					75	36	3	0	0	0	0.26966	1	9126	9126		79.713	2.395	1	9636800	+		38144	37459	26159	26213	43727	43727					0.05278315994382865
LDHIFSQLI	9	Unmodified	_LDHIFSQLI_					0	0	0			REV__SATB2|p.V636L|1|0.16|ENSG00000119042|chr2:199272507-199272507|C/A|missense_variant	REV__SATB2|p.V636L|1|0.16|ENSG00000119042|chr2:199272507-199272507|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3027954101562	2	543.303124	1084.5917	-1.2747	-0.00069256	0.86187	0.00046826	-0.41286	-0.00022431	543.3035353328938	74.367	1.592	74.376	74.051	75.643	0.0096512					86	39	4	0	0	0	0.027092	1	9047	9047		143.89	21.711	1	9757800	+		38145	37459	26159	26213	43728	43728					0.05278315994382865
LDHVSFELFA	10	Unmodified	_LDHVSFELFA_					0	0	0		ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	590.2850952148438	2	589.298039	1176.58152	-0.18304	-0.00010787	3.3313	0.0019631	3.1483	0.0018553	589.2999914524073	23.192	0.50848	22.99	22.687	23.195	-0.20193					17	10	2	0	0	0	0.03519	1	907	907		30.504	5.9844	1	76171			38146	15242	26160	26214	43729	43729					0.0002970826915316138
LDHVSFELFA	10	Unmodified	_LDHVSFELFA_					0	0	0		ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	589.298039	1176.58152	-1.6949	-0.00099878	5.17	0.0030467	3.4752	0.0020479	589.3007623851461	23.106	0.39685	23.106	22.848	23.245	0	0.051759	0.0015341	NaN	35.618	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54670			38147	15242	26160	26214							0.0002970826915316138
LDHVSFELFA	10	Unmodified	_LDHVSFELFA_					0	0	0		ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	589.298039	1176.58152	-1.3652	-0.00080449	5.2271	0.0030803	3.8619	0.0022758	589.3008152672868	23.081	0.34664	23.02	22.844	23.19	-0.060862	-0.034093	0.0016013	NaN	35.618	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46946			38148	15242	26160	26214							0.0002970826915316138
LDHVSFELFA	10	Unmodified	_LDHVSFELFA_					0	0	0		ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	589.298039	1176.58152	0.035414	2.0869E-05	3.6484	0.00215	3.6839	0.0021709	589.299850333041	22.973	0.39422	23.047	22.837	23.232	0.073954	-0.007225	-0.00025929	NaN	35.618	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48641			38149	15242	26160	26214							0.0002970826915316138
LDHVSFELFA	10	Unmodified	_LDHVSFELFA_					0	0	0		ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	589.298039	1176.58152	-1.1575	-0.00068214	4.5557	0.0026847	3.3982	0.0020025	589.3006355047085	23.298	0.6369	23.118	22.605	23.242	-0.17989	0.064067	0.00081001	NaN	35.618	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85946			38150	15242	26160	26214							0.0002970826915316138
LDHVSFELFA	10	Unmodified	_LDHVSFELFA_					0	0	0		ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	ENST00000482002.1_1_7:28318844-28319318:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	589.298039	1176.58152	0.92805	0.0005469	1.9093	0.0011252	2.8374	0.0016721	589.29913547705	23.234	0.40968	23.043	22.758	23.167	-0.19117	-0.011058	-0.002309	NaN	35.618	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90879			38151	15242	26160	26214							0.0002970826915316138
LDIAKLHQ	8	Unmodified	_LDIAKLHQ_					0	0	0			REV__nc|ENSG00000172731|Q8TCA0-2|LRRC20	REV__nc|ENSG00000172731|Q8TCA0-2|LRRC20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.2773132324219	2	469.276909	936.539266	0.3163	0.00014843	-0.29858	-0.00014012	0.017717	8.3143E-06	469.27667076878555	50.037	1.0392	49.885	49.52	50.559	-0.1512					69	29	3	0	0	0	0.6536	1	5194	5194		71.296	4.8664	1	4206100	+		38152	26700	26161	26215	43730	43730					0.06845777651415119
LDIAKLHQ	8	Unmodified	_LDIAKLHQ_					0	0	0			REV__nc|ENSG00000172731|Q8TCA0-2|LRRC20	REV__nc|ENSG00000172731|Q8TCA0-2|LRRC20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2766418457031	2	469.276909	936.539266	0.087997	4.1295E-05	-0.02548	-1.1957E-05	0.062517	2.9338E-05	469.2767886323168	49.75	1.0047	49.824	49.465	50.47	0.074192					63	28	3	0	0	0	0.77775	1	5084	5084		60.972	0.56831	1	4226500	+		38153	26700	26161	26215	43731	43731					0.06845777651415119
LDICYSTVTL	10	Unmodified	_LDICYSTVTL_					0	0	0		ENSG00000280236|ENST00000642051|OR12D2	ENSG00000280236|ENST00000642051|OR12D2	ENSG00000280236|ENST00000642051|OR12D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.7869262695312	2	564.286282	1126.55801	-0.30506	-0.00017214	3.4739	0.0019603	3.1689	0.0017882	564.2878938068495	90.481	0.90216	90.464	89.879	90.781	-0.016708					42	21	3	0	0	0	0.03519	1	11419	11419		14.865	0	1	779990			38154	11079	26162	26216	43732	43732					-0.00020473559675338038
LDIDKPDVLPK	11	Unmodified	_LDIDKPDVLPK_					0	0	0			REV__ENSG00000130649|ENST00000252945|CYP2E1	REV__ENSG00000130649|ENST00000252945|CYP2E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.8748474121094	3	418.243094	1251.70745	-0.13473	-5.6352E-05	-2.5853	-0.0010813	-2.72	-0.0011376	418.2425676533506	37.721	0.57351	37.542	37.128	37.701	-0.17929					19	14	2	0	0	0	0.024742	1	3013	3013		4.4131	0	1	68546	+		38155	23130	26163	26217	43733	43733					0.09166795054557042
LDIEEKND	8	Unmodified	_LDIEEKND_					0	0	0			REV__ENSG00000107968|ENST00000263056|MAP3K8	REV__ENSG00000107968|ENST00000263056|MAP3K8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.79119873046875	2	488.235104	974.455655	0.31051	0.0001516	-0.48915	-0.00023882	-0.17864	-8.7219E-05	488.23457800240135	82.763	0.43341	82.583	82.374	82.807	-0.18079					10	9	2	0	0	0	0.027866	1	9977	9977		19.997	0	1	42045	+		38156	21705	26164	26218	43734	43734					-0.03259423306951703
LDIKTIPK	8	Unmodified	_LDIKTIPK_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2789306640625	2	464.29731	926.580068	-0.3567	-0.00016562	-1.4425	-0.00066975	-1.7992	-0.00083536	464.29628582852223	51.299	0.40156	51.15	50.933	51.335	-0.14916					15	10	2	0	0	0	0.027866	1	5408	5408		19.36	0	1	199630	+		38157	28781	26165	26219	43735	43735					0.11384118971045609
LDILKEKV	8	Unmodified	_LDILKEKV_					0	0	0		ENSG00000166130|ENST00000299157|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.3024597167969	2	479.302593	956.590633	-0.20541	-9.8454E-05	-0.21368	-0.00010242	-0.41909	-0.00020087	479.3024740333337	73.055	1.0557	72.857	72.539	73.595	-0.1981					89	25	5	0	0	0	0.50453	1	8610	8610		85.161	12.282	1	13288000			38158	7506	26166	26220	43736	43736					0.11060101625469088
LDIMFLRG	8	Unmodified	_LDIMFLRG_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.77435302734375	2	482.767863	963.521173	0.011801	5.6973E-06	0.10956	5.2894E-05	0.12136	5.8591E-05	482.76853257738594	50.175	0.58321	50.024	49.671	50.254	-0.1512					24	16	4	0	0	0	0.027866	1	5152	5152		45.952	7.1458	1	128050	+		38159	28137	26167	26221	43737	43737					0.037953194050714956
LDIQCEEL	8	Unmodified	_LDIQCEEL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000533592.2_1_11:501898-502162:-|nuORF;ENST00000528713.5_1_11:500482-502162:-|nuORF;ENST00000531223.1_1_11:499763-502162:-|nuORF;ENST00000525522.5_1_11:499827-504867:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7690734863281	2	481.7286	961.442648	0.41427	0.00019956	-2.4149	-0.0011633	-2.0007	-0.00096377	481.72726355516124	41.157	0.81368	41.157	40.728	41.542	0					54	22	3	0	0	0	0.027866	1	3701	3701		60.972	0	1	845060			38160	968	26168	26222	43738	43738					-0.03961577690699869
LDIQQEEY	8	Unmodified	_LDIQQEEY_					0	0	0		nc|ENSG00000072182|Q96FT7-2|ASIC4;ENST00000474489.5_1_2:220381987-220402187:+|nuORF;ENST00000461395.5_1_2:220378960-220396865:+|nuORF;nc|ENSG00000072182|Q96FT7-1|ASIC4;ENSG00000072182|ENST00000358078|ASIC4	nc|ENSG00000072182|Q96FT7-2|ASIC4	nc|ENSG00000072182|Q96FT7-2|ASIC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2886962890625	2	519.242929	1036.47131	-0.35392	-0.00018377	-2.219	-0.0011522	-2.5729	-0.001336	519.2420574435075	51.411	0.38829	51.134	51.004	51.393	-0.27643					12	9	2	0	0	0	0.027866	1	5292	5292		34.173	0	1	138000			38161	1471	26169	26223	43739	43739					-0.045471367898926474
LDISASYLY	9	Unmodified	_LDISASYLY_					0	0	0			REV__KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	REV__KLHL41|p.N441Cfs*5|1|0.15|ENSG00000239474|chr2:169514906-169514907|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.302978515625	2	522.76604	1043.51753	-0.64551	-0.00033745	-2.2687	-0.001186	-2.9142	-0.0015234	522.7650942266689	30.419	0.41882	30.175	29.905	30.323	-0.24415					13	9	2	0	0	0	0.024506	1	1909	1909		16.473	0	1	57446	+		38162	28950	26170	26224	43740	43740					-0.0024907188781071454
LDISRNQLL	9	Unmodified	_LDISRNQLL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2948608398438	2	536.31148	1070.60841	-1.2845	-0.0006889	0.99153	0.00053177	-0.29299	-0.00015714	536.3118468986218	56.119	0.61516	56.217	55.931	56.546	0.097893					28	16	2	0	0	0	0.02366	1	6140	6140		82.75	18.543	1	1502800			38163	9637	26171	26225	43741	43741					0.07592816880332975
LDKAHRSQ	8	Unmodified	_LDKAHRSQ_					0	0	0			REV__nc|ENSG00000174576|Q8IUM7-3|NPAS4	REV__nc|ENSG00000174576|Q8IUM7-3|NPAS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.7591552734375	2	477.759415	953.504277	-0.79014	-0.0003775	0.48951	0.00023387	-0.30063	-0.00014363	477.7595827863292	38.391	0.71974	38.17	37.898	38.617	-0.22149					46	19	3	0	0	0	0.67154	1	3181	3181		69.628	0.8408	1	3489500	+		38164	26877	26172	26226	43742	43742					0.02566534843469981
LDKAREKLE	9	Unmodified	_LDKAREKLE_					0	0	0		ENST00000463438.5_1_3:14693292-14703332:+|nuORF;ENST00000465759.1_1_3:14693292-14708492:+|nuORF;ENSG00000154781|ENST00000383794|CCDC174	ENST00000463438.5_1_3:14693292-14703332:+|nuORF	ENST00000463438.5_1_3:14693292-14703332:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.316650390625	2	551.316763	1100.61897	-1.0592	-0.00058397	0.080748	4.4518E-05	-0.97848	-0.00053945	551.316633911081	44.048	0.65097	43.829	43.525	44.176	-0.21938					49	17	4	0	0	0	0.28753	1	4075	4075		77.318	3.1526	1	2430300			38165	14732	26173	26227	43743	43743					0.07268799534767822
LDKARHNN	8	Unmodified	_LDKARHNN_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2701416015625	2	484.25704	966.499526	-0.3977	-0.00019259	-3.4305	-0.0016612	-3.8282	-0.0018538	484.2552967863938	31.067	1.201	31.079	30.541	31.742	0.011797					65	28	3	0	0	0	0.027866	1	2067	2067		53.351	5.4358	1	452490	+		38166	20220	26174	26228	43744	43744					0.014936507007064392
LDKCCLTIT	9	Unmodified	_LDKCCLTIT_					0	0	0			REV__ENST00000441044.5_1_1:32706007-32706920:-|nuORF	REV__ENST00000441044.5_1_1:32706007-32706920:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3230895996094	2	505.256471	1008.49839	-1.0957	-0.00055363	-0.3809	-0.00019245	-1.4766	-0.00074608	505.25638604907846	79.441	0.71354	79.268	79.109	79.822	-0.17225					36	16	3	0	0	0	0.023417	1	9855	9855		49.442	0	1	156470	+		38167	32537	26175	26229	43745	43745					-0.00552067774731313
LDKCQITL	8	Unmodified	_LDKCQITL_					0	0	0		SAMD9L|p.A1012T|1|0.4|ENSG00000177409|chr7:93132938-93132938|C/T|missense_variant	SAMD9L|p.A1012T|1|0.4|ENSG00000177409|chr7:93132938-93132938|C/T|missense_variant	SAMD9L|p.A1012T|1|0.4|ENSG00000177409|chr7:93132938-93132938|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2560119628906	2	467.257328	932.500103	-0.14542	-6.7947E-05	-3.4376	-0.0016062	-3.583	-0.0016742	467.2556315786275	76.325	1.6628	76.325	75.806	77.469	0					114	40	4	0	0	0	0.24001	1	9368	9368		133.81	2.7813	1	2889900			38168	37852	26176	26230	43746	43746					0.031153093055309
LDKDQDGLI	9	Unmodified	_LDKDQDGLI_					0	0	0		ENSG00000152689|ENST00000403687|RASGRP3;nc|ENSG00000152689|Q8IV61-2|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.7660217285156	2	508.766571	1015.51859	-0.85615	-0.00043558	0.63723	0.0003242	-0.21892	-0.00011138	508.76677297718265	66.052	0.83725	65.839	65.505	66.343	-0.21327					46	20	3	0	0	0	0.59099	1	7579	7579		53.351	1.0523	1	1567700			38169	6295	26177	26231	43747	43747					0.011451424810957178
LDKEKVKP	8	Unmodified	_LDKEKVKP_					0	0	0			REV__TTN|p.Q623K|1|0.4|ENSG00000155657|chr2:178790049-178790049|G/T|missense_variant	REV__TTN|p.Q623K|1|0.4|ENSG00000155657|chr2:178790049-178790049|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7693786621094	2	478.792392	955.570232	-0.92478	-0.00044278	0.27844	0.00013331	-0.64635	-0.00030947	478.79207196296136	51.516	0.4873	51.603	51.511	51.998	0.087006					21	13	2	0	0	0	0.027866	1	5420	5420		71.877	0	1	311550	+		38170	37743	26178	26232	43748	43748					0.09066930965661868
LDKELRNQLH	10	Unmodified	_LDKELRNQLH_					0	0	0			REV__ENST00000394947.7_1_15:75663751-75664036:-|nuORF	REV__ENST00000394947.7_1_15:75663751-75664036:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7280578613281	3	422.570204	1264.68878	-0.90309	-0.00038162	1.5824	0.00066866	0.67926	0.00028704	422.57085722214686	25.443	0.32554	25.443	25.285	25.611	0					11	7	2	0	0	0	0.03519	1	1193	1193		25.126	0	1	65370	+		38171	31681	26179	26233	43749	43749					0.0670267820337358
LDKFRHAIE	9	Unmodified	_LDKFRHAIE_					0	0	0			REV__CON__P02769	REV__CON__P02769	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8449096679688	2	564.811648	1127.60874	-0.29524	-0.00016676	-1.5528	-0.00087701	-1.848	-0.0010438	564.8105694450226	65.877	0.88411	65.604	65.297	66.181	-0.27282					66	23	4	0	0	0	0.02435	1	7843	7843		34.173	0	1	2510100	+	+	38172	19542	26180	26234	43750	43750					0.050042366001889604
LDKGRLMLL	9	Unmodified	_LDKGRLMLL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.8037109375	2	529.823169	1057.63179	0.81501	0.00043181	0.25935	0.00013741	1.0744	0.00056922	529.8223455030751	64.183	0.58852	64.229	63.975	64.563	0.045502					19	15	2	0	0	0	0.02435	1	7435	7435		42.396	11.892	1	95450			38173	4256;18250;18249	26181	26235	43751	43751					0.10527539393297047
LDKGRLMLL	9	Unmodified	_LDKGRLMLL_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7869873046875	2	529.823169	1057.63179	0.2838	0.00015037	3.0845	0.0016343	3.3683	0.0017846	529.8235884694465	91.195	0.16442	91.056	90.983	91.147	-0.13942					5	3	2	0	0	0	0.024523	1	11161	11161		29.15	0	1	42331			38174	4256;18250;18249	26181	26235	43752	43752					0.10527539393297047
LDKIIELNGG	10	Unmodified	_LDKIIELNGG_					0	0	0		ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2586059570312	2	536.305864	1070.59717	-0.71552	-0.00038374	0.62304	0.00033414	-0.09248	-4.9597E-05	536.306500086437	53.017	1.0686	53.017	52.513	53.582	0					81	28	4	0	0	0	0.03519	1	5792	5792		54.722	3.3869	1	272650			38175	846	26182	26236	43753	43753					0.06469994786198185
LDKKAQLG	8	Unmodified	_LDKKAQLG_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7638244628906	2	436.763635	871.512717	-0.043406	-1.8958E-05	0.22025	9.6199E-05	0.17685	7.7241E-05	436.76361114986486	26.98	1.0193	26.823	26.586	27.605	-0.15664					55	23	4	0	0	0	0.44658	1	1426	1426		90.777	5.8611	1	2220400	+		38176	27166	26183	26237	43754	43754					0.07182088760100669
LDKKIDVI	8	Unmodified	_LDKKIDVI_					0	0	0		nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1	nc|ENSG00000047634|Q9UN30-2|SCML1	nc|ENSG00000047634|Q9UN30-2|SCML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2950134277344	2	472.294768	942.574983	-0.079451	-3.7525E-05	-0.25633	-0.00012106	-0.33578	-0.00015859	472.294585765731	34.335	1.4948	34.128	33.824	35.319	-0.20696					89	37	5	0	0	0	0.44658	1	2511	2511		90.777	0	1	12493000			38177	1107	26184	26238	43755	43755					0.10139815108414041
LDKKISVQT	9	Unmodified	_LDKKISVQT_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3079223632812	2	516.308406	1030.60226	-0.52104	-0.00026902	-0.39848	-0.00020574	-0.91953	-0.00047476	516.3079790757638	46.604	0.73232	46.41	46.013	46.746	-0.19387					60	20	4	0	0	0	0.42604	1	4471	4471		64.207	2.0999	1	1705100	+		38178	23950	26185	26239	43756	43756					0.0881829864881638
LDKLGERLA	9	Unmodified	_LDKLGERLA_					0	0	0		ENST00000464178.1_1_1:38148756-38155336:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8003234863281	2	507.800749	1013.58694	-0.34043	-0.00017287	-0.6441	-0.00032708	-0.98453	-0.00049995	507.80041380250987	31.175	1.4526	30.934	30.585	32.038	-0.24109					97	34	5	0	0	0	0.19099	3	2056	2044;2056;2069		90.37	13.052	1	13276000			38179	3594	26186	26240	43757;43758;43759	43758					0.08069431851617992
LDKLGERLA	9	Unmodified	_LDKLGERLA_					0	0	0		ENST00000464178.1_1_1:38148756-38155336:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8003845214844	2	507.800749	1013.58694	-0.566	-0.00028742	-0.46637	-0.00023682	-1.0324	-0.00052424	507.80050060695794	31.108	1.6361	30.923	30.533	32.169	-0.18503					104	39	6	0	0	0	0.072054	3	2031	2019;2031;2044		120.62	15.874	1	12349000			38180	3594	26186	26240	43760;43761;43762	43761					0.08069431851617992
LDKLGERLA	9	Unmodified	_LDKLGERLA_					0	0	0		ENST00000464178.1_1_1:38148756-38155336:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.80029296875	2	507.800749	1013.58694	-0.40153	-0.0002039	-0.65124	-0.0003307	-1.0528	-0.0005346	507.800441579446	31.14	1.3588	30.987	30.681	32.04	-0.15231					84	33	5	0	0	0	0.23085	1	2025	2025		84.916	5.2029	1	12632000			38181	3594	26186	26240	43763	43763					0.08069431851617992
LDKLKEATI	9	Unmodified	_LDKLKEATI_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.29541015625	2	515.810782	1029.60701	-0.54829	-0.00028282	0.13303	6.8618E-05	-0.41526	-0.0002142	515.810978787525	37.018	0.67025	36.799	36.405	37.076	-0.2195					23	16	2	0	0	0	0.024427	1	2951	2951		26.693	0	1	257220			38182	18641	26187	26241	43764	43764					0.09339182791563871
LDKLNSTGVT	10	Unmodified	_LDKLNSTGVT_					0	0	0			REV__nc|ENSG00000135111|O15119-3|TBX3	REV__nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2872924804688	2	524.287671	1046.56079	-0.49173	-0.00025781	0.057378	3.0083E-05	-0.43435	-0.00022772	524.2876664873692	27.856	0.63232	27.611	27.289	27.922	-0.24499					38	14	3	0	0	0	0.45418	1	1586	1586		93.143	2.5424	1	2651700	+		38183	23514	26188	26242	43765	43765					0.03937117889495312
LDKLNSTGVT	10	Unmodified	_LDKLNSTGVT_					0	0	0			REV__nc|ENSG00000135111|O15119-3|TBX3	REV__nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2877197265625	2	524.287671	1046.56079	-0.16834	-8.826E-05	-0.30507	-0.00015994	-0.47341	-0.0002482	524.2874855521978	27.778	0.64907	27.622	27.307	27.956	-0.15664					38	15	3	0	0	0	0.32213	1	1535	1535		106.68	5.4304	1	2822900	+		38184	23514	26188	26242	43766	43766					0.03937117889495312
LDKLQEQL	8	Unmodified	_LDKLQEQL_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;COG2|p.D519Y|1|0.27|ENSG00000135775|chr1:230687109-230687109|G/T|missense_variant	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7792663574219	2	493.779482	985.544411	0.1633	8.0633E-05	-0.3292	-0.00016255	-0.1659	-8.1919E-05	493.77922859335547	49.787	0.70956	49.787	49.437	50.146	0					33	19	2	0	0	0	0.28835	1	5181	5181		116.9	1.4095	1	6462400			38185	4932	26189	26243	43767	43767					0.05106036723384477
LDKLQEQL	8	Unmodified	_LDKLQEQL_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;COG2|p.D519Y|1|0.27|ENSG00000135775|chr1:230687109-230687109|G/T|missense_variant	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7794494628906	2	493.779482	985.544411	0.052927	2.6134E-05	-0.56186	-0.00027744	-0.50893	-0.0002513	493.77931769956535	50.008	0.70278	49.857	49.52	50.223	-0.1512					39	19	3	0	0	0	0.25873	1	5175	5175		129.68	5.0884	1	7039100			38186	4932	26189	26243	43768	43768					0.05106036723384477
LDKLQHIT	8	Unmodified	_LDKLQHIT_					0	0	0			REV__nc|ENSG00000089250|P29475-4|NOS1	REV__nc|ENSG00000089250|P29475-4|NOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.28192138671875	2	484.282192	966.549831	0.026735	1.2947E-05	0.16315	7.901E-05	0.18988	9.1957E-05	484.2821185762179	41.833	1.2983	41.71	41.385	42.683	-0.12299					65	34	3	0	0	0	0.35998	1	3728	3728		102.77	3.3984	1	2509900	+		38187	36499	26190	26244	43769	43769					0.06521760305838598
LDKLQHIT	8	Unmodified	_LDKLQHIT_					0	0	0			REV__nc|ENSG00000089250|P29475-4|NOS1	REV__nc|ENSG00000089250|P29475-4|NOS1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	484.282192	966.549831	0.026735	1.2947E-05	0.16315	7.901E-05	0.18988	9.1957E-05	484.2821185762179	41.833	1.2983	41.71	41.385	42.683	-0.12299	-0.10104	-8.5683E-05	NaN	102.77	65	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2509900	+		38188	36499	26190	26244							0.06521760305838598
LDKPPLKLT	9	Unmodified	_LDKPPLKLT_					0	0	0			REV__ENSG00000110367|ENST00000534980|DDX6	REV__ENSG00000110367|ENST00000534980|DDX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.78662109375	2	512.823692	1023.63283	0.69329	0.00035554	-2.6741	-0.0013714	-1.9808	-0.0010158	512.8228278972282	71.392	0.35263	71.103	70.96	71.313	-0.28857					12	8	2	0	0	0	0.024466	1	8599	8599		39.253	16.21	1	87289	+		38189	21855	26191	26245	43770	43770					0.12196077033843267
LDKQASKL	8	Unmodified	_LDKQASKL_					0	0	0			REV__ENSG00000183763|ENST00000331456|TRAIP	REV__ENSG00000183763|ENST00000331456|TRAIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.76904296875	2	451.768917	901.523281	0.033579	1.517E-05	-0.33767	-0.00015255	-0.30409	-0.00013738	451.76875442995373	27.512	1.0502	27.27	26.954	28.004	-0.24217					63	24	4	0	0	0	0.5947	2	1514	1514;1522		76.774	7.9873	1	4520100	+		38190	27606	26192	26246	43771;43772	43771					0.06858071414524147
LDKQASKL	8	Unmodified	_LDKQASKL_					0	0	0			REV__ENSG00000183763|ENST00000331456|TRAIP	REV__ENSG00000183763|ENST00000331456|TRAIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.76898193359375	2	451.768917	901.523281	-0.59801	-0.00027016	0.42675	0.00019279	-0.17126	-7.7369E-05	451.769088727356	27.362	0.95968	27.194	26.809	27.768	-0.16816					58	22	4	0	0	0	0.47665	2	1497	1497;1509		87.754	8.3033	1	3938000	+		38191	27606	26192	26246	43773;43774	43773					0.06858071414524147
LDKQIKTI	8	Unmodified	_LDKQIKTI_					0	0	0		nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	nc|ENSG00000111913|Q9Y4F9-2|RIPOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.80059814453125	2	479.800217	957.585882	0.033614	1.6128E-05	-0.56025	-0.00026881	-0.52663	-0.00025268	479.79991854114894	27.258	1.2599	27.016	26.744	28.004	-0.24217					55	29	4	0	0	0	0.56311	1	1512	1512		79.713	4.6693	1	4984400			38192	3159	26193	26247	43775	43775					0.10539217482721597
LDKQPVRRA	9	Unmodified	_LDKQPVRRA_					0	0	0			REV__ENSG00000144354|ENST00000306721|CDCA7	REV__ENSG00000144354|ENST00000306721|CDCA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7761840820312	2	541.825089	1081.63563	-0.61084	-0.00033097	2.8679	0.0015539	2.257	0.0012229	541.8263820138267	67.305	0.75095	67.305	66.968	67.719	0					31	18	2	0	0	0	0.024457	1	8062	8062		21.96	0	1	1208800	+		38193	24327	26194	26248	43776	43776					0.0980734521137947
LDKQSWGLLG	10	Unmodified	_LDKQSWGLLG_					0	0	0			REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7391967773438	2	558.806031	1115.59751	0.19907	0.00011124	0.84876	0.00047429	1.0478	0.00058553	559.3081865663119	79.099	0.42517	78.844	78.514	78.939	-0.25471					16	9	2	0	0	0	0.03519	1	9441	9441		40.778	9.2484	1	111650	+		38194	24655	26195	26249	43777	43777					0.04433414506047484
LDKRELIEN	9	Unmodified	_LDKRELIEN_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B;REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.352294921875	2	565.31422	1128.61389	0.61069	0.00034523	1.1991	0.00067785	1.8097	0.0010231	566.3155647763155	87.083	0.45953	86.947	86.761	87.22	-0.13613					18	10	3	0	0	0	0.024017	1	10565	10565		65.465	0	1	28067	+		38195	28893;30761	26196	26250	43778	43778					0.05472495672142941
LDKRKERKRIY	11	Unmodified	_LDKRKERKRIY_					0	0	0			REV__ENST00000604081.1_1_12:54388028-54388532:-|nuORF	REV__ENST00000604081.1_1_12:54388028-54388532:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2942199707031	3	502.307203	1503.89978	0.28564	0.00014348	0.049175	2.4701E-05	0.33481	0.00016818	502.3085014522823	102.2	0.48613	102.19	102.06	102.55	-0.0054474					14	10	2	0	0	0	0.02489	1	13024	13024		1.2319	0	1	41172	+		38196	35902	26197	26251	43779	43779					0.16798555245259195
LDKSLHTPM	9	Unmodified	_LDKSLHTPM_					0	0	0		ENSG00000198965|ENST00000641067|OR10R2;nc|ENSG00000198965|Q8NGX6|OR10R2	ENSG00000198965|ENST00000641067|OR10R2	ENSG00000198965|ENST00000641067|OR10R2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2733154296875	2	521.273509	1040.53247	-0.20306	-0.00010585	-4.0304	-0.0021009	-4.2335	-0.0022068	521.2714620792403	61.608	1.1659	61.351	61.008	62.174	-0.25725					78	28	5	0	0	0	0.32811	1	6869	6869		71.877	11.759	1	7201600			38197	10269	26198	26252	43780	43780					0.013820967085393931
LDKSSKALS	9	Unmodified	_LDKSSKALS_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.7716369628906	2	474.771657	947.528761	-0.65538	-0.00031115	0.40903	0.0001942	-0.24635	-0.00011696	474.771778321532	29.409	0.90366	29.163	28.578	29.481	-0.24524					53	20	4	0	0	0	0.071379	3	1804	1783;1792;1804		120.87	11.39	1	4095000			38198	8661	26199	26253	43781;43782;43783	43783					0.05289750206338795
LDKSSKALS	9	Unmodified	_LDKSSKALS_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.7716064453125	2	474.771657	947.528761	-0.47587	-0.00022593	0.14737	6.9965E-05	-0.32851	-0.00015597	474.77166322133087	29.294	1.0218	29.122	28.85	29.872	-0.17258					47	23	3	0	0	0	0.042502	2	1764	1764;1773		131.62	16.722	1	3761600			38199	8661	26199	26253	43784;43785	43784					0.05289750206338795
LDKSSKALS	9	Unmodified	_LDKSSKALS_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.77154541015625	2	474.771657	947.528761	-0.32615	-0.00015485	-0.084729	-4.0227E-05	-0.41088	-0.00019508	474.7715729399414	29.258	0.92783	29.109	28.615	29.542	-0.14952					62	21	4	0	0	0	0.056725	3	1749	1740;1749;1761		126.24	11.39	1	4123000			38200	8661	26199	26253	43786;43787;43788	43787					0.05289750206338795
LDKYCHTIL	9	Unmodified	_LDKYCHTIL_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.3077392578125	2	553.289159	1104.56377	-0.93432	-0.00051695	0.06757	3.7386E-05	-0.86675	-0.00047956	553.2891945668475	44.334	1.8513	44.334	43.296	45.147	0					83	52	2	0	0	0	0.024405	1	4235	4235		27.882	0	1	626510	+		38201	22447	26200	26254	43789	43789					0.015666697426240717
LDLAQKSL	8	Unmodified	_LDLAQKSL_					0	0	0		nc|ENSG00000127081|Q5JVG2-3|ZNF484;ENSG00000127081|ENST00000375495|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	2	444.263468	886.512382	-0.86115	-0.00038258	1.1679	0.00051885	0.30673	0.00013627	444.2639049638152	29.54	1.0233	29.295	28.967	29.99	-0.24524					46	23	3	0	0	0	0.44658	1	1819	1819		90.777	0	1	1397000			38202	4226	26201	26255	43790	43790					0.06458669040239329
LDLAQKSL	8	Unmodified	_LDLAQKSL_					0	0	0		nc|ENSG00000127081|Q5JVG2-3|ZNF484;ENSG00000127081|ENST00000375495|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-3|ZNF484	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	444.263468	886.512382	0.033113	1.4711E-05	-0.14007	-6.2227E-05	-0.10695	-4.7516E-05	444.26326552332006	29.471	0.74842	29.321	29.044	29.792	-0.14952	0.018947	-0.00045481	NaN	90.777	48	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1406800			38203	4226	26201	26255							0.06458669040239329
LDLARIVI	8	Unmodified	_LDLARIVI_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.7976989746094	2	456.797478	911.580402	-0.70829	-0.00032355	1.3074	0.00059722	0.5991	0.00027367	456.7976913092468	28.286	1.0361	28.117	27.649	28.685	-0.16897					67	24	5	0	0	0	0.56592	1	1648	1648		79.451	2.6769	1	4522300	+		38204	25249	26202	26256	43791	43791					0.12107538690884212
LDLCKCQSV	9	Carbamidomethyl (C)	_LDLCKC(Carbamidomethyl (C))QSV_	LDLCKC(1)QSV		LDLC(-41)KC(41)QSV		0	1	0		ENST00000536214.1_2_17:657286-657484:+|nuORF	ENST00000536214.1_2_17:657286-657484:+|nuORF	ENST00000536214.1_2_17:657286-657484:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2554321289062	2	533.257002	1064.49945	-1.2428	-0.00066274	-1.8741	-0.00099937	-3.1169	-0.0016621	533.2558982323878	40.937	2.6949	40.707	39.237	41.932	-0.23029					156	71	3	0	0	0	0.16638	1	3592	3592		95.815	8.0609	2	1866700			38205	16359	26203	26257	43792	43792	219				-0.030218534058349178
LDLDDCGIVD	10	Unmodified	_LDLDDCGIVD_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.24462890625	2	539.242072	1076.46959	-1.623	-0.00087518	-4.0705	-0.002195	-5.6934	-0.0030701	539.7417981704193	55.451	0.45012	55.549	55.294	55.744	0.098015					24	11	3	0	0	0	0.03519	1	6070	6070		51.193	0	1	325120			38206	10347	26204	26258	43793	43793					-0.06558513870163551
LDLDKSIKV	9	Unmodified	_LDLDKSIKV_					0	0	0		ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7739868164062	2	515.810782	1029.60701	0.29517	0.00015225	1.5643	0.00080686	1.8594	0.00095911	515.8120914164166	69.15	0.61717	68.908	68.587	69.204	-0.24277					30	14	3	0	0	0	0.023454	1	7992	7992		93.195	10.955	1	297440			38207	14406	26205	26259	43794	43794					0.09339182791586609
LDLDKSIKV	9	Unmodified	_LDLDKSIKV_					0	0	0		ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.810782	1029.60701	0.45947	0.000237	5.9772	0.0030831	6.4367	0.0033201	515.8139720790364	69.44	0.9101	69.147	69.05	69.96	-0.29291	0.10744	0.002303	NaN	93.195	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313360			38208	14406	26205	26259							0.09339182791586609
LDLDKSIKV	9	Unmodified	_LDLDKSIKV_					0	0	0		ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.810782	1029.60701	-0.89514	-0.00046173	7.6936	0.0039685	6.7985	0.0035067	515.8148668463908	69.253	0.74603	69.268	69.209	69.955	0.015129	0.22823	0.0040737	NaN	93.195	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240170			38209	14406	26205	26259							0.09339182791586609
LDLDKSIKV	9	Unmodified	_LDLDKSIKV_					0	0	0		ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.810782	1029.60701	-0.87948	-0.00045364	2.1974	0.0011334	1.3179	0.00067978	515.8123383821716	69.242	0.50572	68.98	68.747	69.252	-0.26166	-0.059375	-0.0015964	NaN	93.195	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297800			38210	14406	26205	26259							0.09339182791586609
LDLDKSIKV	9	Unmodified	_LDLDKSIKV_					0	0	0		ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.810782	1029.60701	-0.14689	-7.5769E-05	0.36947	0.00019058	0.22258	0.00011481	515.8113628070394	69.126	0.45728	68.895	68.76	69.217	-0.23048	-0.14438	-0.0034821	NaN	93.195	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286650			38211	14406	26205	26259							0.09339182791586609
LDLDNFRLL	9	Unmodified	_LDLDNFRLL_					0	0	0			REV__nc|ENSG00000106609|Q9NWD8-2|TMEM248	REV__nc|ENSG00000106609|Q9NWD8-2|TMEM248	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.814697265625	2	559.813856	1117.61316	-0.4095	-0.00022924	3.3497	0.0018752	2.9402	0.001646	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.31247	1	9775	9775		73.975	0	1	31806000	+		38212	21630	26206	26260	43795	43795					0.05905701023107213
LDLETWDW	8	Unmodified	_LDLETWDW_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-4|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2791137695312	2	539.248015	1076.48148	-1.187	-0.00064011	-3.0094	-0.0016228	-4.1964	-0.0022629	539.2461059812318	42.504	0.80489	42.273	41.865	42.67	-0.23029					35	21	3	0	0	0	0.027866	1	3834	3834		19.36	0	1	481240			38213	5132	26207	26261	43796	43796					-0.053705290646803405
LDLFRKPE	8	Unmodified	_LDLFRKPE_					0	0	0		ENST00000570049.5_1_16:67354603-67354729:-|nuORF	ENST00000570049.5_1_16:67354603-67354729:-|nuORF	ENST00000570049.5_1_16:67354603-67354729:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.82672119140625	2	509.290017	1016.56548	-0.35038	-0.00017845	0.70569	0.0003594	0.35531	0.00018096	509.29007863002903	40.762	0.4816	40.537	40.368	40.85	-0.225					17	10	2	0	0	0	0.027866	1	3526	3526		17.365	0	1	204010			38214	17018	26208	26262	43797	43797					0.05786046822890967
LDLGDRVR	8	Unmodified	_LDLGDRVR_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2713928222656	2	472.269616	942.524678	-0.26524	-0.00012526	4.4782	0.0021149	4.2129	0.0019896	472.2716241578891	64.776	0.80852	64.776	64.384	65.192	0					55	21	4	0	0	0	0.80469	2	7645	7634;7645		58.782	5.3856	1	3944100	+		38215	27808	26209	26263	43798;43799	43799					0.051117055032818826
LDLGDRVR	8	Unmodified	_LDLGDRVR_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2712707519531	2	472.269616	942.524678	-0.13155	-6.2128E-05	4.3395	0.0020494	4.208	0.0019873	472.2715521784319	64.723	0.85641	64.769	64.372	65.229	0.045418					54	22	4	0	0	0	0.71063	2	7545	7545;7555		66.429	3.123	1	4739600	+		38216	27808	26209	26263	43800;43801	43800					0.051117055032818826
LDLGIKTSL	9	Unmodified	_LDLGIKTSL_					0	0	0		ENST00000425030.1_1_2:201987361-201987433:+|nuORF	ENST00000425030.1_1_2:201987361-201987433:+|nuORF	ENST00000425030.1_1_2:201987361-201987433:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.29229736328125	2	480.292225	958.569897	0.28432	0.00013656	-0.41311	-0.00019841	-0.12879	-6.1856E-05	480.2919837013997	77.993	1.4075	77.731	77.399	78.806	-0.26201					85	32	5	0	0	0	0.12933	1	9266	9266		104.01	7.98	1	7203100			38217	14058	26210	26264	43802	43802					0.08895511245816579
LDLGIKTSL	9	Unmodified	_LDLGIKTSL_					0	0	0		ENST00000425030.1_1_2:201987361-201987433:+|nuORF	ENST00000425030.1_1_2:201987361-201987433:+|nuORF	ENST00000425030.1_1_2:201987361-201987433:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2920227050781	2	480.292225	958.569897	0.58191	0.00027949	-0.72011	-0.00034587	-0.13821	-6.638E-05	480.29182211107957	77.917	1.4881	77.674	77.362	78.85	-0.24232					89	34	4	0	0	0	0.071379	1	9274	9274		120.87	3.0574	1	7055200			38218	14058	26210	26264	43803	43803					0.08895511245816579
LDLGIKTSL	9	Unmodified	_LDLGIKTSL_					0	0	0		ENST00000425030.1_1_2:201987361-201987433:+|nuORF	ENST00000425030.1_1_2:201987361-201987433:+|nuORF	ENST00000425030.1_1_2:201987361-201987433:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2926330566406	2	480.292225	958.569897	0.086102	4.1354E-05	-0.33501	-0.0001609	-0.24891	-0.00011955	480.2920066707163	77.852	1.3705	77.69	77.355	78.725	-0.16196					83	31	4	0	0	0	0.038547	2	9248	9248;9282		134.77	5.3443	1	6623800			38219	14058	26210	26264	43804;43805	43804					0.08895511245816579
LDLGKPLI	8	Unmodified	_LDLGKPLI_					0	0	0			REV__ENSG00000148704|ENST00000369206|VAX1	REV__ENSG00000148704|ENST00000369206|VAX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.2515563964844	2	434.778754	867.542954	-0.74127	-0.00032229	1.4837	0.00064507	0.74241	0.00032278	434.77964638334043	79.412	0.79363	79.24	79.029	79.822	-0.17226					26	18	2	0	0	0	0.027866	1	9887	9887		24.203	0	1	92781	+		38220	24632	26211	26265	43806	43806					0.10388447425293634
LDLGKPLI	8	Unmodified	_LDLGKPLI_					0	0	0			REV__ENSG00000148704|ENST00000369206|VAX1	REV__ENSG00000148704|ENST00000369206|VAX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.75933837890625	2	434.778754	867.542954	0.22629	9.8386E-05	-0.56969	-0.00024769	-0.3434	-0.0001493	434.78047277315744	86.624	0.38777	86.646	86.374	86.762	0.021889					9	8	2	0	0	0	0.027866	1	10808	10808		19.36	0	1	32497	+		38221	24632	26211	26265	43807	43807					0.10388447425293634
LDLGLRPE	8	Unmodified	_LDLGLRPE_					0	0	0			REV__ENSG00000175213|ENST00000311764|ZNF408	REV__ENSG00000175213|ENST00000311764|ZNF408	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2950439453125	2	456.761092	911.507631	-0.16388	-7.4853E-05	0.70095	0.00032017	0.53707	0.00024531	456.76101679981946	56.128	0.46928	55.972	55.814	56.284	-0.15602					16	12	2	0	0	0	0.027866	1	6219	6219		64.207	21.811	1	138080	+		38222	26929	26212	26266	43808	43808					0.04833784897471105
LDLHRFHK	8	Unmodified	_LDLHRFHK_					0	0	0			REV__nc|ENSG00000148053|Q16620-2|NTRK2	REV__nc|ENSG00000148053|Q16620-2|NTRK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3244018554688	2	533.30125	1064.58795	-0.57359	-0.0003059	-1.2225	-0.00065197	-1.7961	-0.00095787	533.300272032343	73.447	1.1039	73.175	72.395	73.499	-0.27126					48	27	3	0	0	0	0.027866	1	8848	8848		31.955	2.8053	1	1430200	+		38223	24591	26213	26267	43809	43809					0.05823691011164556
LDLHVIYDV	9	Unmodified	_LDLHVIYDV_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3468017578125	2	543.795132	1085.57571	-0.5145	-0.00027978	0.23051	0.00012535	-0.28398	-0.00015443	544.2965685129008	78.807	0.38608	78.651	78.47	78.856	-0.15592					11	8	2	0	0	0	0.02435	1	9393	9393		51.335	10.557	1	86367			38224	2152	26214	26268	43810	43810					0.036346097574551095
LDLHVIYDV	9	Unmodified	_LDLHVIYDV_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.795132	1085.57571	-0.58376	-0.00031745	1.7391	0.00094573	1.1554	0.00062829	544.2978781282524	78.784	0.41862	78.592	78.464	78.883	-0.19211	-0.02959	0.00069136	NaN	42.396	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100100			38225	2152	26214	26268							0.036346097574551095
LDLINRKI	8	Unmodified	_LDLINRKI_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1;SLC44A1|p.C98R|1|0.09|ENSG00000070214|chr9:105335585-105335585|T/C|missense_variant	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.8137512207031	2	492.813659	983.612765	-1.0533	-0.00051906	0.97843	0.00048218	-0.074831	-3.6878E-05	492.81403024071255	53.579	0.91531	53.443	53.171	54.087	-0.13617					63	27	4	0	0	0	0.42327	1	5624	5624		94.006	8.6469	1	6269500			38226	1421	26215	26269	43811	43811					0.12030326093884014
LDLIVGTAPL	10	Unmodified	_LDLIVGTAPL_					0	0	0			REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	REV__ENST00000444374.1_1_9:92316696-92316852:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.3072814941406	2	506.307875	1010.6012	-0.60771	-0.00030769	0.71461	0.00036181	0.1069	5.4126E-05	506.30812060812616	83.984	1.1116	84.011	83.427	84.538	0.026558					59	25	4	0	0	0	0.85955	1	10427	10427		56.721	1.2168	1	1033700	+		38227	32589	26216	26270	43812	43812					0.0963208427989457
LDLKFLNNHI	10	Unmodified	_LDLKFLNNHI_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2469787597656	3	409.567912	1225.68191	0.8459	0.00034645	-3.3046	-0.0013534	-2.4587	-0.001007	409.5665376666213	37.497	0.65895	37.529	37.264	37.923	0.032272					46	17	4	0	0	0	0.03519	1	3068	3068		56.434	0	1	948810			38228	5068	26217	26271	43813	43813					0.07809365322805206
LDLKKMIR	8	Unmodified	_LDLKKMIR_					0	0	0			REV__ENST00000263238.6_1_2:114713257-114715078:+|nuORF	REV__ENST00000263238.6_1_2:114713257-114715078:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.801025390625	2	508.817887	1015.62122	1.2125	0.00061692	-2.0352	-0.0010356	-0.82277	-0.00041864	508.8166868919098	36.792	0.52428	36.583	36.282	36.806	-0.2092					30	12	3	0	0	0	0.027866	1	2911	2911		23.042	0	1	558750	+		38229	29682	26218	26272	43814	43814					0.11403556738855514
LDLKNHSL	8	Unmodified	_LDLKNHSL_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2666320800781	2	470.266542	938.51853	-0.34641	-0.0001629	0.10996	5.171E-05	-0.23645	-0.00011119	470.2665127384437	29.852	1.2653	29.607	29.317	30.582	-0.24415					60	29	4	0	0	0	0.26064	1	1864	1864		128.86	0	1	3146500	+		38230	28953	26219	26273	43815	43815					0.0468118727176261
LDLKNHSL	8	Unmodified	_LDLKNHSL_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2665710449219	2	470.266542	938.51853	-0.57485	-0.00027033	0.3532	0.0001661	-0.22165	-0.00010424	470.26662877874793	29.744	1.1735	29.571	29.242	30.416	-0.17258					62	27	4	0	0	0	0.26064	1	1839	1839		128.86	9.3043	1	3173800	+		38231	28953	26219	26273	43816	43816					0.0468118727176261
LDLKNHSL	8	Unmodified	_LDLKNHSL_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2664489746094	2	470.266542	938.51853	-0.43493	-0.00020453	0.13595	6.3932E-05	-0.29898	-0.0001406	470.266518762673	29.768	1.1302	29.618	29.129	30.259	-0.14952					64	26	4	0	0	0	0.26064	2	1818	1818;1855		128.86	9.5779	1	3055300	+		38232	28953	26219	26273	43817;43818	43817					0.0468118727176261
LDLKQPRGAA	10	Unmodified	_LDLKQPRGAA_					0	0	0		ENSG00000242110|ENST00000335606|AMACR;nc|ENSG00000242110|Q9UHK6-5|AMACR;nc|ENSG00000242110|Q9UHK6-4|AMACR;nc|ENSG00000242110|Q9UHK6-2|AMACR	ENSG00000242110|ENST00000335606|AMACR	ENSG00000242110|ENST00000335606|AMACR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.8111572265625	2	534.811648	1067.60874	-0.75705	-0.00040488	0.45433	0.00024298	-0.30272	-0.0001619	534.8117284219766	32.258	0.74344	32.101	31.861	32.605	-0.15772					39	17	4	0	0	0	0.80817	1	2203	2203		60.118	5.3419	1	1094800			38233	10791	26220	26274	43819	43819					0.07764236600178265
LDLLCCES	8	Unmodified	_LDLLCCES_					0	0	0		ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	ENST00000446265.3_1:149648157-149648721:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.7615966796875	2	448.198622	894.38269	-0.19932	-8.9334E-05	2.1501	0.00096368	1.9508	0.00087434	448.19950119854497	25.377	0.5842	25.206	24.997	25.581	-0.17078					22	13	2	0	0	0	0.027866	1	1201	1201		33.516	0	1	126340			38234	14454	26221	26275	43820	43820					-0.06872591625574387
LDLLKRGDK	9	Unmodified	_LDLLKRGDK_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3052368164062	2	529.321848	1056.62914	-0.40329	-0.00021347	-1.0469	-0.00055416	-1.4502	-0.00076763	529.3217180564278	64.22	0.32597	63.992	63.74	64.066	-0.22774					10	7	2	0	0	0	0.024523	1	7279	7279		21.96	8.1846	1	122990	+		38235	24867	26222	26276	43821	43821					0.10309407260001535
LDLLKTVI	8	Unmodified	_LDLLKTVI_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.7991638183594	2	457.799686	913.584819	-0.091222	-4.1761E-05	0.13012	5.9569E-05	0.0389	1.7808E-05	457.7995925448515	72.951	0.72588	72.674	72.325	73.051	-0.2769					33	16	3	0	0	0	0.46709	2	8550	8550;8562		88.643	0	1	399110	+		38236	21385	26223	26277	43822;43823	43822					0.12457003113809151
LDLLKTVI	8	Unmodified	_LDLLKTVI_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.799560546875	2	457.799686	913.584819	-0.11743	-5.3761E-05	0.14809	6.7794E-05	0.030653	1.4033E-05	457.79960293402837	72.867	1.0315	72.603	72.3	73.331	-0.26479					39	24	3	0	0	0	0.38451	1	8553	8553		99.375	0	1	613050	+		38237	21385	26223	26277	43824	43824					0.12457003113809151
LDLLKTVI	8	Unmodified	_LDLLKTVI_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.7993469238281	2	457.799686	913.584819	-0.37557	-0.00017193	0.41276	0.00018896	0.037197	1.7029E-05	457.79974084375476	72.783	0.75119	72.585	72.248	72.999	-0.19811					36	17	3	0	0	0	0.5947	1	8526	8526		76.774	0	1	683410	+		38238	21385	26223	26277	43825	43825					0.12457003113809151
LDLLKTVI	8	Unmodified	_LDLLKTVI_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	457.799686	913.584819	-0.091222	-4.1761E-05	0.13012	5.9569E-05	0.0389	1.7808E-05	457.7995925448515	72.951	0.72588	72.674	72.325	73.051	-0.2769	0.05326	-0.00011513	NaN	99.375	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399110	+		38239	21385	26223	26277							0.12457003113809151
LDLLKTVI	8	Unmodified	_LDLLKTVI_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	457.799686	913.584819	-0.11743	-5.3761E-05	0.14809	6.7794E-05	0.030653	1.4033E-05	457.79960293402837	72.867	1.0315	72.603	72.3	73.331	-0.26479	-0.017827	-9.8684E-05	NaN	99.375	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613050	+		38240	21385	26223	26277							0.12457003113809151
LDLLKTVI	8	Unmodified	_LDLLKTVI_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	457.799686	913.584819	-0.37557	-0.00017193	0.41276	0.00018896	0.037197	1.7029E-05	457.79974084375476	72.783	0.75119	72.585	72.248	72.999	-0.19811	-0.035434	0.00014365	NaN	99.375	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	683410	+		38241	21385	26223	26277							0.12457003113809151
LDLLKVEY	8	Unmodified	_LDLLKVEY_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.2629699707031	2	496.786776	991.558998	-0.71368	-0.00035455	-2.038	-0.0010125	-2.7517	-0.001367	496.78572686155724	29.671	0.58987	29.499	29.325	29.915	-0.17258					17	13	2	0	0	0	0.027866	1	1806	1806		30.504	0	1	175580			38242	4326	26224	26278	43826	43826					0.062881088715244
LDLLLKLH	8	Unmodified	_LDLLLKLH_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.8083190917969	2	482.813128	963.611703	-1.225	-0.00059144	0.68177	0.00032917	-0.54323	-0.00026228	482.81324910570873	21.405	0.19661	21.192	21.069	21.266	-0.2128					6	3	2	0	0	0	0.027866	1	630	630		20.482	6.7065	1	13282			38243	9907	26225	26279	43827	43827					0.1284411172498494
LDLLLLRPLRL	11	Unmodified	_LDLLLLRPLRL_					0	0	0			REV__VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	REV__VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.63592529296875	3	445.634257	1333.88094	0.21537	9.5974E-05	3.7138	0.001655	3.9291	0.001751	445.6358142382711	40.084	1.9182	40.084	39.733	41.652	0					203	53	5	0	0	0	1.1077	1	3513	3513		9.2118	0.41249	1	6583600	+		38244	26233	26226	26280	43828	43828					0.22735625621498912
LDLLQDKNT	9	Unmodified	_LDLLQDKNT_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000404600.2_1_6:1514778-1515111:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.305419921875	2	530.287671	1058.56079	-0.42259	-0.00022409	1.6083	0.00085288	1.1857	0.00062879	530.7887553837122	64.339	0.39243	64.147	63.881	64.273	-0.19243					19	9	3	0	0	0	0.024397	1	7330	7330		47.657	18.508	1	228980			38245	699	26227	26281	43829	43829					0.03385117889456524
LDLLSVTIE	9	Unmodified	_LDLLSVTIE_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7898864746094	2	501.789515	1001.56448	0.39321	0.00019731	-0.34081	-0.00017101	0.052406	2.6297E-05	501.7891681506543	99.743	0.59586	99.738	99.343	99.939	-0.0050812					30	13	3	0	0	0	0.43973	1	12696	12696		63.306	2.3343	1	550550			38246	5269	26228	26282	43830	43830					0.06375787663353094
LDLLYRKF	8	Unmodified	_LDLLYRKF_					0	0	0			REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant	REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7756958007812	2	534.316035	1066.61752	-0.14956	-7.9915E-05	-0.35652	-0.00019049	-0.50608	-0.00027041	534.315521256809	63.306	0.99878	63.047	62.835	63.833	-0.25824					64	25	4	0	0	0	0.027866	1	7138	7138		37.159	5.2042	1	1540300	+		38247	24421	26229	26283	43831	43831					0.08687210236666942
LDLNDLARI	9	Unmodified	_LDLNDLARI_					0	0	0		ENSG00000079689|ENST00000377961|SCGN	ENSG00000079689|ENST00000377961|SCGN	ENSG00000079689|ENST00000377961|SCGN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3247680664062	2	521.798206	1041.58186	-1.4319	-0.00074715	-0.7435	-0.00038796	-2.1754	-0.0011351	521.7977269031334	49.458	0.48876	49.533	49.242	49.731	0.074192					22	12	2	0	0	0	0.019995	1	5057	5057		101.6	2.2258	1	833290			38248	1671	26230	26284	43832	43832					0.06273127989015848
LDLNRLKL	8	Unmodified	_LDLNRLKL_					0	0	0			REV__nc|ENSG00000176236|Q8N326|RPP38-DT	REV__nc|ENSG00000176236|Q8N326|RPP38-DT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.8140563964844	2	492.813659	983.612765	-1.0533	-0.00051906	0.97843	0.00048218	-0.074831	-3.6878E-05	492.81403024071255	53.579	0.91531	53.443	53.171	54.087	-0.13617					63	27	4	0	0	0	0.50239	1	5635	5635		85.359	0	1	6269500	+		38249	36962	26231	26285	43833	43833					0.12030326093884014
LDLPDKPVF	9	Unmodified	_LDLPDKPVF_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2718505859375	2	522.292225	1042.5699	-0.16635	-8.6882E-05	-4.2722	-0.0022314	-4.4386	-0.0023182	522.2896700066223	42.452	0.42506	42.478	42.255	42.68	0.026012					19	11	3	0	0	0	0.024447	1	3833	3833		40.778	0	1	251610	+		38250	20429	26232	26286	43834	43834					0.050315112458065414
LDLPSELF	8	Unmodified	_LDLPSELF_					0	0	0			REV__ENST00000075120.11_1_12:8088655-8088694:-|nuORF	REV__ENST00000075120.11_1_12:8088655-8088694:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.9280700683594	2	467.250026	932.485499	0.69206	0.00032337	-3.1241	-0.0014597	-2.432	-0.0011364	467.2485046646907	23.914	0.58413	23.99	23.778	24.362	0.076241					19	12	2	0	0	0	0.027866	1	947	947		52.299	0	1	95514	+		38251	29266	26233	26287	43835	43835					0.016555604290374504
LDLQIIQLI	9	Unmodified	_LDLQIIQLI_					0	0	0			REV__nc|ENSG00000173950|Q8NBI6-2|XXYLT1	REV__nc|ENSG00000173950|Q8NBI6-2|XXYLT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2698974609375	2	534.8368	1067.65905	-0.83873	-0.00044859	0.96318	0.00051514	0.12445	6.6558E-05	534.8369233560063	52.856	0.67186	52.856	52.595	53.267	0					46	17	3	0	0	0	0.024405	1	5651	5651		35.618	0	1	1064700	+		38252	26823	26234	26288	43836	43836					0.1279234620533316
LDLRDNKLK	9	Unmodified	_LDLRDNKLK_					0	0	0		LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant;ENSG00000066557|ENST00000370952|LRRC40	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.8318481445312	2	557.83258	1113.65061	-0.21163	-0.00011805	0.053522	2.9856E-05	-0.15811	-8.8198E-05	557.8325086443164	39.551	0.91224	39.325	39.022	39.934	-0.2257					62	23	4	0	0	0	0.15366	1	3355	3355		98.629	2.8142	1	3074900			38253	1341	26235	26289	43837	43837					0.09832792288671044
LDLRGYGE	8	Unmodified	_LDLRGYGE_					0	0	0		ENST00000480758.1_1_1:92498118-92508548:+|nuORF;ENSG00000172031|ENST00000370383|EPHX4	ENST00000480758.1_1_1:92498118-92508548:+|nuORF;ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MSMS	OPSCC_40_ClassI_Rep-3	6	461.7342834472656	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.89	1	103.72	103.22	104.22	-0.16791								0	0	0	0.92657	1	12910	12910		25.45	1.2474	1				38254	8232;15210	26236	26290	43838	43838					-0.008273785162828062
LDLRKSVL	8	Unmodified	_LDLRKSVL_					0	0	0		ENST00000381070.7_1_5:64064874-64064913:+|nuORF	ENST00000381070.7_1_5:64064874-64064913:+|nuORF	ENST00000381070.7_1_5:64064874-64064913:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.30010986328125	2	472.300384	942.586216	0.1909	9.016E-05	-0.68597	-0.00032398	-0.49507	-0.00023382	472.3000857074888	20.146	1.1134	19.979	19.718	20.832	-0.16774					67	22	7	0	0	0	0.91956	1	535	535		49.442	7.0454	1	3651400			38255	13329	26237	26291	43839	43839					0.112626372025602
LDLRLAKQV	9	Unmodified	_LDLRLAKQV_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7694702148438	2	528.332216	1054.64988	-0.508	-0.00026839	-0.080082	-4.231E-05	-0.58808	-0.0003107	528.8337291435411	40.411	0.41093	40.411	40.212	40.623	0					29	11	4	0	0	0	0.024523	1	3520	3520		21.96	0	1	422670	+		38256	21307	26238	26292	43840	43840					0.12473997639631307
LDLRLAKQV	9	Unmodified	_LDLRLAKQV_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.332216	1054.64988	-0.41671	-0.00022016	-6.512	-0.0034405	-6.9287	-0.0036606	528.3269622982792	40.567	1.4319	40.59	40.311	41.743	0.023006	0.092196	-0.0027564	NaN	19.997	43	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342750	+		38257	21307	26238	26292							0.12473997639631307
LDLRNNEISW	10	Unmodified	_LDLRNNEISW_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.24102783203125	3	420.55081	1258.6306	0.078741	3.3115E-05	0.067059	2.8202E-05	0.1458	6.1316E-05	420.55065170568594	37.515	0.57755	37.322	37.002	37.58	-0.193					33	14	4	0	0	0	0.03519	1	3031	3031		37.508	0	1	419310			38258	10205	26239	26293	43841	43841					0.01162996558082341
LDLRSISV	8	Unmodified	_LDLRSISV_					0	0	0		ENSG00000182040|ENST00000614341|USH1G	ENSG00000182040|ENST00000614341|USH1G	ENSG00000182040|ENST00000614341|USH1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.7689514160156	2	451.768917	901.523281	-0.59801	-0.00027016	0.42675	0.00019279	-0.17126	-7.7369E-05	451.769088727356	27.362	0.95968	27.194	26.809	27.768	-0.16816					58	22	4	0	0	0	0.47665	1	1486	1486		87.754	10.908	1	3938000			38259	9093	26240	26294	43842	43842					0.06858071414512779
LDLRSTGI	8	Unmodified	_LDLRSTGI_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.7532653808594	2	437.753267	873.491981	-0.0029491	-1.291E-06	0.13174	5.7672E-05	0.1288	5.6381E-05	437.7533157380422	49.796	1.0979	49.516	49.123	50.221	-0.27977					89	28	5	0	0	0	0.53593	1	4986	4986		82.241	0	1	18359000			38260	8905	26241	26295	43843	43843					0.050174983804254225
LDLSGNEL	8	Unmodified	_LDLSGNEL_					0	0	0		ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.6985778808594	2	430.721633	859.428712	-0.61568	-0.00026518	0.69728	0.00030033	0.081603	3.5148E-05	430.7227427225597	33.057	0.23016	33.063	32.85	33.08	0.0066261					6	5	2	0	0	0	0.027866	1	2318	2318		82.305	0	1	20327			38261	10896	26242	26296	43844	43844					-0.0066248712747665195
LDLSKNAI	8	Unmodified	_LDLSKNAI_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2554931640625	2	437.255643	872.496732	-0.3325	-0.00014539	0.71133	0.00031103	0.37883	0.00016565	437.2557105914806	47.649	0.68795	47.552	47.314	48.002	-0.097553					49	18	3	0	0	0	0.59392	1	4686	4686		76.847	2.33	1	1898800			38262	8916	26243	26297	43845	43845					0.055383825231729134
LDLSQNHL	8	Unmodified	_LDLSQNHL_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.2664489746094	2	470.248349	938.482145	-0.4337	-0.00020395	0.095001	4.4674E-05	-0.3387	-0.00015927	470.24873364194264	30.151	0.26421	30.002	29.792	30.056	-0.14952					6	5	2	0	0	0	0.027866	1	1855	1855		82.305	0	1	35774			38263	9707	26244	26298	43846	43846					0.010443103750390037
LDLSVTLMV	9	Unmodified	_LDLSVTLMV_					0	0	0			REV__ENST00000521086.6_1_8:54915485-54915566:-|nuORF	REV__ENST00000521086.6_1_8:54915485-54915566:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7867126464844	2	495.780636	989.546719	0.84932	0.00042107	-3.4551	-0.001713	-2.6058	-0.0012919	495.7788309287897	19.581	0.2995	19.381	19.206	19.505	-0.2001					8	5	2	0	0	0	0.024412	1	432	432		17.365	0	1	34416	+		38264	34309	26245	26299	43847	43847					0.05152749136846069
LDLTKNEID	9	Unmodified	_LDLTKNEID_					0	0	0		ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2902221679688	2	530.779679	1059.5448	-0.26525	-0.00014079	-0.32866	-0.00017444	-0.5939	-0.00031523	531.2811893124124	86.81	0.89181	86.81	86.386	87.278	0					29	20	2	0	0	0	0.024397	1	10871	10871		47.657	5.2612	1	109640			38265	2588	26246	26300	43848	43848					0.01741411652574243
LDLTYYFFCF	10	Unmodified	_LDLTYYFFCF_					0	0	0		TMEM92|p.P138Lfs*86|1|0.2|ENSG00000167105|chr17:50279237-50279237|C/-|frameshift_variant	TMEM92|p.P138Lfs*86|1|0.2|ENSG00000167105|chr17:50279237-50279237|C/-|frameshift_variant	TMEM92|p.P138Lfs*86|1|0.2|ENSG00000167105|chr17:50279237-50279237|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.18902587890625	3	444.538742	1330.5944	-0.45103	-0.0002005	-2.429	-0.0010798	-2.8801	-0.0012803	444.53750346678044	33.103	0.23833	32.937	32.839	33.077	-0.16565					7	5	2	0	0	0	0.03519	1	2319	2319		35.152	11.774	1	39704			38266	38091	26247	26301	43849	43849					-0.05767596662985852
LDLVRLAPL	9	Unmodified	_LDLVRLAPL_					0	0	0			REV__ENSG00000130764|ENST00000378251|LRRC47	REV__ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.32379150390625	2	505.32386	1008.63317	-0.41311	-0.00020875	-0.55573	-0.00028082	-0.96884	-0.00048958	505.3239398964379	79.056	3.538	79.056	78.616	82.154	0					279	85	6	0	0	0	0.48817	1	9842	9842		60.118	1.8883	1	98664000	+		38267	23152	26248	26302	43850	43850					0.12919496753693238
LDLVRLAPL	9	Unmodified	_LDLVRLAPL_					0	0	0			REV__ENSG00000130764|ENST00000378251|LRRC47	REV__ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.32379150390625	2	505.32386	1008.63317	-0.021531	-1.088E-05	-1.0461	-0.00052863	-1.0676	-0.00053951	505.32367507392587	79.153	5.1565	79.172	78.693	83.85	0.018677					323	123	5	0	0	0	0.29158	1	9712	9712		76.774	5.4784	1	98007000	+		38268	23152	26248	26302	43851	43851					0.12919496753693238
LDLVRLAPL	9	Unmodified	_LDLVRLAPL_					0	0	0			REV__ENSG00000130764|ENST00000378251|LRRC47	REV__ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.32373046875	2	505.32386	1008.63317	0.43061	0.0002176	-1.1927	-0.00060271	-0.76212	-0.00038512	505.3233501309143	79.104	3.6681	78.849	78.471	82.139	-0.25471					219	87	5	0	0	0	0.29158	1	9457	9457		76.774	0	1	36200000	+		38269	23152	26248	26302	43852	43852					0.12919496753693238
LDLVRLAPL	9	Unmodified	_LDLVRLAPL_					0	0	0			REV__ENSG00000130764|ENST00000378251|LRRC47	REV__ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.3237609863281	2	505.32386	1008.63317	-0.071224	-3.5991E-05	-0.74214	-0.00037502	-0.81337	-0.00041101	505.32356722396315	78.994	3.687	78.843	78.432	82.119	-0.15051					219	87	6	0	0	0	0.32811	1	9426	9426		71.877	6.4121	1	35565000	+		38270	23152	26248	26302	43853	43853					0.12919496753693238
LDLVSSRN	8	Unmodified	_LDLVSSRN_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2479553222656	2	452.248349	902.482145	-0.50016	-0.0002262	-1.1867	-0.0005367	-1.6869	-0.0007629	452.24797314140966	33.232	1.5758	33.239	32.888	34.463	0.0066223					137	41	6	0	0	0	0.77775	1	2371	2371		60.972	8.6728	1	95624000			38271	4330	26249	26303	43854	43854					0.0270031037505305
LDLWALGSV	9	Unmodified	_LDLWALGSV_					0	0	0		ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2540588378906	2	487.271293	972.528032	-1.0321	-0.00050293	-4.2208	-0.0020567	-5.253	-0.0025596	487.26905446816016	64.825	0.7486	64.563	64.047	64.796	-0.2626					24	19	2	0	0	0	0.023596	1	7623	7623		63.306	8.53	1	157620			38272	12950	26250	26304	43855	43855					0.04066955557277652
LDLYLAIFI	9	Unmodified	_LDLYLAIFI_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8215942382812	2	540.820618	1079.62668	0.090821	4.9118E-05	-0.63341	-0.00034256	-0.54259	-0.00029344	540.8202719051073	105.92	0.60449	105.92	105.69	106.29	0					43	25	2	0	0	0	0.64155	1	13599	13599		50.025	0	1	215800			38273	2146	26251	26305	43856	43856					0.09005558802323321
LDLYLIHW	8	Unmodified	_LDLYLIHW_					0	0	0		nc|ENSG00000165568|Q96JD6-4|AKR1E2;ENSG00000165568|ENST00000298375|AKR1E2;nc|ENSG00000165568|Q96JD6-5|AKR1E2;nc|ENSG00000165568|Q96JD6-3|AKR1E2;nc|ENSG00000165568|Q96JD6-2|AKR1E2;ENSG00000085662|ENST00000285930|AKR1B1;ENST00000489022.5_1_7:134133851-134143844:-|nuORF;ENST00000484592.5_1_7:134134339-134143844:-|nuORF;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	nc|ENSG00000165568|Q96JD6-4|AKR1E2;ENSG00000085662|ENST00000285930|AKR1B1	nc|ENSG00000165568|Q96JD6-4|AKR1E2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8163452148438	2	536.794935	1071.57532	-0.82407	-0.00044236	-2.968	-0.0015932	-3.7921	-0.0020356	536.7932442253413	65.234	0.73795	65.272	65.007	65.745	0.037384					35	20	2	0	0	0	0.027866	1	7704	7704		28.254	0	1	2771300			38274	7433;1796	26252	26306	43857	43857					0.04239234828287408
LDLYLSISFS	10	Unmodified	_LDLYLSISFS_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.3199462890625	2	579.308072	1156.60159	-0.16303	-9.4445E-05	-0.83665	-0.00048468	-0.99968	-0.00057912	579.8100524761677	91.223	0.84625	91.083	90.903	91.75	-0.13942					30	19	2	0	0	0	0.03519	1	11158	11158		15.642	4.7763	1	69719			38275	14114	26253	26307	43858	43858					0.029554592091017184
LDLYLSISFS	10	Unmodified	_LDLYLSISFS_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	579.308072	1156.60159	-2.3301	-0.0013498	0.59297	0.00034351	-1.7371	-0.0010063	579.307334366327	90.732	0.71521	90.732	90.214	90.929	0	-0.12787	0.00074632	NaN	15.642	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70490			38276	14114	26253	26307							0.029554592091017184
LDLYLSISFS	10	Unmodified	_LDLYLSISFS_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	579.308072	1156.60159	-0.57709	-0.00033431	-0.3403	-0.00019714	-0.91739	-0.00053145	579.3069880979331	90.909	0.8354	90.897	90.239	91.075	-0.012383	0.036403	-0.00033499	NaN	15.642	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86552			38277	14114	26253	26307							0.029554592091017184
LDLYLSISFS	10	Unmodified	_LDLYLSISFS_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	579.308072	1156.60159	0.1473	8.5332E-05	-1.2146	-0.00070364	-1.0673	-0.00061831	579.3063026792997	90.68	0.71199	90.691	90.238	90.95	0.011276	-0.16932	-0.001348	NaN	15.642	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55247			38278	14114	26253	26307							0.029554592091017184
LDLYLSISFS	10	Unmodified	_LDLYLSISFS_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	579.308072	1156.60159	-1.2649	-0.00073276	0.70085	0.00040601	-0.56404	-0.00032675	579.8106362343884	90.897	1.9353	90.741	90.14	92.076	-0.1552	-0.11903	0.00087131	NaN	15.642	61	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243510			38279	14114	26253	26307							0.029554592091017184
LDLYLSISFS	10	Unmodified	_LDLYLSISFS_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	579.308072	1156.60159	-1.0043	-0.00058178	-0.74004	-0.00042871	-1.7443	-0.0010105	579.3070819670771	91.14	1.347	91.017	90.754	92.101	-0.12341	0.15671	-0.00079812	NaN	15.642	47	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142770			38280	14114	26253	26307							0.029554592091017184
LDLYRIKN	8	Unmodified	_LDLYRIKN_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.768310546875	2	517.803291	1033.59203	-0.41117	-0.00021291	-0.55907	-0.00028949	-0.97024	-0.00050239	517.8029110261234	39.229	0.51294	39.006	38.789	39.302	-0.22311					40	13	4	0	0	0	0.027866	1	3343	3343		42.474	8.9589	1	530100	+		38281	26571	26254	26308	43859	43859					0.07657735714224145
LDLYYTWHLV	10	Unmodified	_LDLYYTWHLV_					0	0	0			REV__ENST00000524717.5_1_11:95710913-95711108:-|nuORF	REV__ENST00000524717.5_1_11:95710913-95711108:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.24591064453125	3	441.564168	1321.67067	-0.45383	-0.00020039	1.8784	0.00082942	1.4245	0.00062902	441.56497800467747	21.637	0.38311	21.708	21.546	21.929	0.071487					12	7	2	0	0	0	0.03519	1	644	644		23.523	4.26	1	30234	+		38282	34394	26255	26309	43860	43860					0.02270543228655697
LDMGLLRGSV	10	Unmodified	_LDMGLLRGSV_					0	0	0			REV__ENSG00000141569|ENST00000269383|TRIM65	REV__ENSG00000141569|ENST00000269383|TRIM65	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3134155273438	2	530.794609	1059.57467	-0.58768	-0.00031194	-2.9928	-0.0015885	-3.5804	-0.0019005	530.7929911855238	64.738	0.70956	64.483	64.191	64.901	-0.25563					35	17	3	0	0	0	0.03519	1	7360	7360		42.864	0	1	821990	+		38283	24107	26256	26310	43861	43861					0.047260721169323006
LDMHFLAAGT	10	Unmodified	_LDMHFLAAGT_					0	0	0			REV__ENSG00000185453|ENST00000614654|ZSWIM9	REV__ENSG00000185453|ENST00000614654|ZSWIM9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7823486328125	2	538.265684	1074.51682	-1.0121	-0.00054477	1.3165	0.0007086	0.30437	0.00016383	538.2663206427036	50.258	0.82905	50.258	49.878	50.707	0					50	24	3	0	0	0	0.03519	1	5237	5237		19.104	0	1	262500	+		38284	27763	26257	26311	43862	43862					-0.01746189808500276
LDMKTPVL	8	Unmodified	_LDMKTPVL_					0	0	0		ENST00000488907.5_1_2:97276365-97278231:-|nuORF;nc|ENSG00000114982|Q9P2N6-8|KANSL3;ENST00000487070.5_1_2:97267510-97285240:-|nuORF;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3	ENST00000488907.5_1_2:97276365-97278231:-|nuORF	ENST00000488907.5_1_2:97276365-97278231:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.7640380859375	2	458.762246	915.50994	1.8701	0.00085795	1.711	0.00078495	3.5811	0.0016429	458.7630833065857	23.532	1.4686	23.341	22.851	24.319	-0.19117					81	33	4	0	0	0	0.50239	1	893	893		85.359	5.9085	1	8963600			38285	3399	26258	26312	43863	43863					0.04880497310921328
LDMKVVRDD	9	Unmodified	_LDMKVVRDD_					0	0	0			REV__ENSG00000170381|ENST00000643230|SEMA3E	REV__ENSG00000170381|ENST00000643230|SEMA3E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.31640625	2	545.781699	1089.54884	-1.4673	-0.00080082	2.0893	0.0011403	0.62204	0.0003395	546.2844781905609	91.06	0.45271	90.912	90.772	91.225	-0.1487					15	10	2	0	0	0	0.024418	1	11165	11165		23.523	13.257	1	285850	+		38286	26463	26259	26313	43864	43864					0.007651778746321725
LDMLSRIKY	9	Unmodified	_LDMLSRIKY_					0	0	0		ENSG00000184156|ENST00000388996|KCNQ3;nc|ENSG00000184156|O43525-2|KCNQ3;ENST00000519589.1_1_8:133141511-133152462:-|nuORF	ENSG00000184156|ENST00000388996|KCNQ3	ENSG00000184156|ENST00000388996|KCNQ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7968139648438	2	569.818084	1137.62162	-0.72909	-0.00041545	-4.2424	-0.0024174	-4.9715	-0.0028329	569.8156449025365	45.041	0.48243	44.941	44.672	45.154	-0.099449					25	12	3	0	0	0	0.024209	1	4217	4217		56.721	22.549	1	305300			38287	9309	26260	26314	43865	43865					0.05830931668060657
LDMLVKYF	8	Unmodified	_LDMLVKYF_					0	0	0			REV__ENSG00000158966|ENST00000651257|CACHD1	REV__ENSG00000158966|ENST00000651257|CACHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8154296875	2	514.777896	1027.54124	-0.66166	-0.00034061	3.8958	0.0020055	3.2341	0.0016649	514.7797929550665	44.773	0.48892	44.81	44.578	45.067	0.0369					24	13	2	0	0	0	0.027866	1	4231	4231		33.516	0	1	616700	+		38288	25227	26261	26315	43866	43866					0.028570703449986468
LDMSEPQTK	9	Unmodified	_LDMSEPQTK_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;ENST00000500085.2_1_4:187509748-187518366:-|nuORF	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2877197265625	2	524.752607	1047.49066	-0.1555	-8.16E-05	3.8354	0.0020126	3.6799	0.001931	524.7544592678956	27.754	0.65698	27.597	27.185	27.842	-0.15664					24	15	2	0	0	0	0.021513	1	1535	1535		116.9	34.599	1	134810			38289	1762	26262	26316	43867	43867					-0.031185037706336516
LDNAKQYN	8	Unmodified	_LDNAKQYN_					0	0	0			REV__ENSG00000196553|ENST00000636229|CCDC196	REV__ENSG00000196553|ENST00000636229|CCDC196	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2546691894531	2	483.237981	964.461409	-0.67352	-0.00032547	0.62815	0.00030355	-0.045368	-2.1924E-05	483.2379863106112	30.667	0.75035	30.489	30.04	30.791	-0.17817					24	17	2	0	0	0	0.027866	1	1990	1990		52.299	15.14	1	91887	+		38290	28196	26263	26317	43868	43868					-0.022242800046228695
LDNGGLVYL	9	Unmodified	_LDNGGLVYL_					0	0	0			REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2605895996094	2	482.260925	962.507297	-0.28429	-0.0001371	0.8068	0.00038909	0.52251	0.00025198	482.2611531047443	66.74	1.278	66.459	66.281	67.559	-0.28149					96	36	3	0	0	0	0.59099	1	7924	7924		53.351	5.6941	1	3600200	+		38291	27840	26264	26318	43869	43869					0.02454365177618456
LDNKITVL	8	Unmodified	_LDNKITVL_					0	0	0			REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.2786560058594	2	458.279118	914.543683	0.59453	0.00027246	-0.27185	-0.00012458	0.32268	0.00014788	458.27894164982126	47.259	1.2768	47.106	46.55	47.827	-0.15301					68	35	4	0	0	0	0.50239	1	4720	4720		85.359	0	1	4023400	+		38292	23265	26265	26319	43870	43870					0.08299242074315316
LDNLECGDIL	10	Unmodified	_LDNLECGDIL_					0	0	0		ENSG00000171962|ENST00000399187|DRC3	ENSG00000171962|ENST00000399187|DRC3	ENSG00000171962|ENST00000399187|DRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.3077392578125	2	552.765714	1103.51688	-1.0001	-0.00055281	-1.3167	-0.00072783	-2.3168	-0.0012806	552.7646754698412	44.434	0.51169	44.434	44.281	44.793	0					23	14	2	0	0	0	0.03519	1	4235	4235		15.642	0	1	210850			38293	8226	26266	26320	43871	43871					-0.030742345991711773
LDNLVLPK	8	Unmodified	_LDNLVLPK_					0	0	0			REV__ENST00000370287.7_1_X:151903744-151903939:+|nuORF	REV__ENST00000370287.7_1_X:151903744-151903939:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2692565917969	2	456.28166	910.548768	-0.66035	-0.00030131	1.4998	0.00068431	0.83941	0.00038301	456.2823026622315	47.436	0.29622	47.495	47.319	47.615	0.059097					14	8	3	0	0	0	0.027866	1	4684	4684		38.806	14.603	1	127520	+		38294	31122	26267	26321	43872	43872					0.08991545936942202
LDNLVLPK	8	Unmodified	_LDNLVLPK_					0	0	0			REV__ENST00000370287.7_1_X:151903744-151903939:+|nuORF	REV__ENST00000370287.7_1_X:151903744-151903939:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.28166	910.548768	-0.030714	-1.4014E-05	2.981	0.0013602	2.9503	0.0013462	456.28178400120106	47.305	0.23515	47.111	46.997	47.232	-0.19387	-0.1916	0.0009565	NaN	30.504	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46169	+		38295	31122	26267	26321							0.08991545936942202
LDNPEYHNA	9	Unmodified	_LDNPEYHNA_					0	0	0		nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.2783813476562	2	536.738345	1071.46214	-1.0901	-0.00058508	1.3205	0.00070876	0.23043	0.00012368	536.7389826628051	29.743	0.42038	29.57	29.325	29.745	-0.17258					15	9	2	0	0	0	0.024389	1	1830	1830		42.864	12.361	1	120530			38296	8819	26268	26322	43873	43873					-0.07073485355567755
LDNRVVLI	8	Unmodified	_LDNRVVLI_					0	0	0			REV__ENSG00000141378|ENST00000393038|PTRH2	REV__ENSG00000141378|ENST00000393038|PTRH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2926330566406	2	471.292559	940.570566	-0.11834	-5.5771E-05	0.038407	1.8101E-05	-0.07993	-3.7671E-05	471.29258327038116	50.194	1.2249	50.194	49.805	51.03	0					106	35	4	0	0	0	0.47665	1	5228	5228		87.754	10.98	1	24213000	+		38297	24076	26269	26323	43874	43874					0.09790350685523208
LDNRVVLI	8	Unmodified	_LDNRVVLI_					0	0	0			REV__ENSG00000141378|ENST00000393038|PTRH2	REV__ENSG00000141378|ENST00000393038|PTRH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	471.292559	940.570566	0.54867	0.00025858	-0.64577	-0.00030435	-0.097105	-4.5765E-05	471.2922474433009	50.099	1.4463	50.18	49.775	51.221	0.080994					107	41	4	0	0	0	0.77775	1	5177	5177		60.972	0	1	26009000	+		38298	24076	26269	26323	43875	43875					0.09790350685523208
LDNTALNRIA	10	Unmodified	_LDNTALNRIA_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.806396484375	2	550.806562	1099.59857	-1.2462	-0.00068639	0.93249	0.00051362	-0.31367	-0.00017277	550.8069424850445	38.625	0.7865	38.445	38.17	38.956	-0.17929					49	21	4	0	0	0	0.48123	1	3216	3216		90.37	0	1	2572400			38299	4526	26270	26324	43876	43876					0.05275628874960603
LDNTWGNAED	10	Unmodified	_LDNTWGNAED_					0	0	0		nc|ENSG00000124215|Q8IXH8-1|CDH26;ENSG00000124215|ENST00000348616|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.279052734375	2	567.738542	1133.46253	0.32044	0.00018193	-3.204	-0.001819	-2.8836	-0.0016371	568.2381151062714	79.194	0.58134	78.975	78.662	79.244	-0.21923					25	13	3	0	0	0	0.03519	1	9495	9495		47.96	8.7067	1	146580			38300	18237	26271	26325	43877	43877					-0.09886110426373307
LDNVEPQLS	9	Unmodified	_LDNVEPQLS_					0	0	0			REV__ENSG00000239305|ENST00000237455|RNF103	REV__ENSG00000239305|ENST00000237455|RNF103	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.327880859375	2	507.758746	1013.50294	-0.3858	-0.00019589	1.9626	0.00099655	1.5768	0.00080065	507.76004183247153	33.784	0.65872	33.78	33.412	34.071	-0.0045624					22	16	2	0	0	0	0.024397	1	2421	2421		47.657	13.485	1	121890	+		38301	28948	26272	26326	43878	43878					-0.003271440359412736
LDNVLREFI	9	Unmodified	_LDNVLREFI_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.815673828125	2	559.813856	1117.61316	-0.92953	-0.00052036	3.9468	0.0022095	3.0173	0.0016891	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.53979	1	10048	10048		56.721	6.6965	1	11139000	+		38302	20345	26273	26327	43879	43879					0.05905701023084475
LDNVLREFI	9	Unmodified	_LDNVLREFI_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8154907226562	2	559.813856	1117.61316	-0.4095	-0.00022924	3.3497	0.0018752	2.9402	0.001646	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.5973	1	9655	9655		52.937	1.6012	1	31806000	+		38303	20345	26273	26327	43880	43880					0.05905701023084475
LDNVRNLS	8	Unmodified	_LDNVRNLS_					0	0	0		nc|ENSG00000113456|O60671-3|RAD1;ENST00000506311.1_1_5:34914790-34915562:-|nuORF;nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1	nc|ENSG00000113456|O60671-3|RAD1	nc|ENSG00000113456|O60671-3|RAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.784423828125	2	465.753798	929.493044	0.01182	5.5054E-06	3.042	0.0014168	3.0538	0.0014223	465.75615014708666	42.339	0.15543	42.216	42.116	42.271	-0.12299					5	3	2	0	0	0	0.027866	1	3809	3809		111.65	18.453	1	56483			38304	3295	26274	26328	43881	43881					0.025477127493331864
LDPADFSVGY	10	Unmodified	_LDPADFSVGY_					0	0	0		nc|ENSG00000275183|Q96B70|LENG9;ENSG00000275183|ENST00000611161|LENG9;LENG9|p.E319Dfs*14|1|0.42|ENSG00000275183|chr19:54462570-54462570|T/-|frameshift_variant	nc|ENSG00000275183|Q96B70|LENG9	nc|ENSG00000275183|Q96B70|LENG9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7985229492188	2	542.253297	1082.49204	0.060383	3.2743E-05	-0.27177	-0.00014737	-0.21139	-0.00011463	542.7546610544334	32.263	0.64935	32.071	31.728	32.377	-0.19262					28	14	3	0	0	0	0.03519	1	2173	2173		35.618	8.8222	1	73942			38305	11037	26275	26329	43882	43882					-0.04590546410236129
LDPAKPHS	8	Unmodified	_LDPAKPHS_					0	0	0			REV__ENST00000300527.8_1_21:47552514-47552718:+|nuORF	REV__ENST00000300527.8_1_21:47552514-47552718:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.731689453125	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	0.99042	1	12285	12285		38.806	3.6054	1	1517800	+		38306	30047	26276	26330	43883	43883					0.012929426918958598
LDPAVIKVC	9	Unmodified	_LDPAVIKVC_					0	0	0		HSPA12A|p.R531C|1|0.33|ENSG00000165868|chr10:116675218-116675218|G/A|missense_variant	HSPA12A|p.R531C|1|0.33|ENSG00000165868|chr10:116675218-116675218|G/A|missense_variant	HSPA12A|p.R531C|1|0.33|ENSG00000165868|chr10:116675218-116675218|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2776184082031	2	479.275521	956.536489	0.1691	8.1046E-05	3.582	0.0017168	3.7511	0.0017978	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.85329	1	9756	9756		35.618	1.4457	1	1990900			38307	17749	26277	26331	43884	43884					0.05648186202245142
LDPDIGGVAVA	11	Unmodified	_LDPDIGGVAVA_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.7754516601562	2	513.776939	1025.53933	-0.038555	-1.9809E-05	-0.76696	-0.00039405	-0.80552	-0.00041386	513.7764575902085	102.69	0.43951	102.56	102.28	102.72	-0.12666					21	9	3	0	0	0	0.782	1	12769	12769		58.782	4.0056	1	394510			38308	7859	26278	26332	43885	43885					0.027577328607549134
LDPDLSRLL	9	Unmodified	_LDPDLSRLL_					0	0	0		nc|ENSG00000132768|Q9BQC3-3|DPH2;ENSG00000132768|ENST00000255108|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.279541015625	2	521.300581	1040.58661	-0.43797	-0.00022832	-2.095	-0.0010921	-2.533	-0.0013205	521.8026153887997	60.075	0.17653	59.875	59.761	59.938	-0.20016					6	4	2	0	0	0	0.024367	1	6859	6859		16.717	0	1	63480			38309	4650	26279	26333	43886	43886					0.06794012131740601
LDPFASKDL	9	Unmodified	_LDPFASKDL_					0	0	0			REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.2671813964844	2	503.266207	1004.51786	0.16816	8.463E-05	2.3431	0.0011792	2.5112	0.0012638	503.2669467790603	71.38	1.5708	71.391	70.345	71.916	0.010735					68	39	3	0	0	0	0.19099	1	8574	8574		90.37	9.9152	1	1534500	+		38310	23442	26280	26334	43887	43887					0.01578347832048621
LDPGRERSD	9	Unmodified	_LDPGRERSD_					0	0	0			REV__ENST00000559786.1_1_19:42656838-42660162:+|nuORF	REV__ENST00000559786.1_1_19:42656838-42660162:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.9920043945312	2	522.757069	1043.49959	0.02834	1.4815E-05	-2.96	-0.0015474	-2.9317	-0.0015325	522.7550926311991	55.058	0.62534	54.827	54.565	55.19	-0.23087					34	17	3	0	0	0	0.024495	1	5873	5873		19.997	0	1	2188600	+		38311	35126	26281	26335	43888	43888					-0.020423940899490844
LDPGSVKPM	9	Unmodified	_LDPGSVKPM_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2695617675781	2	472.249503	942.484453	-0.26702	-0.0001261	-2.8589	-0.0013501	-3.1259	-0.0014762	472.2487724684404	40.205	0.44361	40.055	39.746	40.189	-0.1497					19	11	3	0	0	0	0.024405	1	3446	3446		35.618	0	1	142980	+		38312	22797	26282	26336	43889	43889					0.010910227885005952
LDPHMGLFL	9	Unmodified	_LDPHMGLFL_					0	0	0			REV__ENSG00000070614|ENST00000261797|NDST1	REV__ENSG00000070614|ENST00000261797|NDST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7911376953125	2	521.773145	1041.53174	-1.3085	-0.00068273	-0.68937	-0.00035969	-1.9978	-0.0010424	521.7720842322935	21.381	0.14824	21.381	21.293	21.441	0					4	2	2	0	0	0	0.024506	1	653	653		23.042	10.836	1	7708.6	+		38313	20431	26283	26337	43890	43890					0.012633020594876143
LDPHQNAVDT	10	Unmodified	_LDPHQNAVDT_					0	0	0			REV__ENST00000434984.2_1_X:56269451-56269685:-|nuORF	REV__ENST00000434984.2_1_X:56269451-56269685:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.299072265625	2	555.264727	1108.5149	0.39386	0.0002187	-1.5448	-0.00085777	-1.1509	-0.00063907	555.2637740348781	78.438	0.44817	78.246	78.016	78.464	-0.19211					18	10	2	0	0	0	0.03519	1	9679	9679		29.17	12.697	1	134390	+		38314	32431	26284	26338	43891	43891					-0.03501527292769424
LDPHQVNLL	9	Unmodified	_LDPHQVNLL_					0	0	0			REV__nc|ENSG00000186088|A4D1B5-2|GSAP	REV__nc|ENSG00000186088|A4D1B5-2|GSAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7927856445312	2	524.792924	1047.57129	0.53826	0.00028247	0.86601	0.00045448	1.4043	0.00073695	524.7931361382306	70.287	0.3423	69.994	69.795	70.137	-0.29291					12	9	2	0	0	0	0.77768	1	8463	8463		40.778	2.9666	1	811480	+		38315	37024	26285	26339	43892	43892					0.049411453345555856
LDPKNARPG	9	Unmodified	_LDPKNARPG_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2704162597656	2	484.269616	966.524678	-0.66699	-0.000323	0.33416	0.00016182	-0.33283	-0.00016118	484.26968161963856	31.791	0.60513	31.86	31.486	32.092	0.06896					37	14	3	0	0	0	0.6504	1	2114	2114		49.442	7.0454	1	1291800			38316	18361	26286	26340	43893	43893					0.04007705503283887
LDPKNARPG	9	Unmodified	_LDPKNARPG_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.269616	966.524678	-0.42787	-0.0002072	-0.10363	-5.0183E-05	-0.53149	-0.00025739	484.2695221479075	32.161	0.78362	32.161	31.71	32.494	0	0.16547	-0.00026236	NaN	49.442	57	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1320100			38317	18361	26286	26340							0.04007705503283887
LDPKNARPG	9	Unmodified	_LDPKNARPG_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.269616	966.524678	-0.46695	-0.00022613	0.029433	1.4254E-05	-0.43752	-0.00021188	484.2695532919936	32.024	0.74928	32.036	31.663	32.413	0.011799	0.039863	-0.00013349	NaN	49.442	49	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1347600			38318	18361	26286	26340							0.04007705503283887
LDPKNARPG	9	Unmodified	_LDPKNARPG_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN;ZAN|p.Y1276Cfs*19|1|0.13|ENSG00000146839|chr7:100760520-100760521|TA/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.269616	966.524678	0.18514	8.9658E-05	3.2043	0.0015518	3.3895	0.0016414	484.2684609737823	32.119	0.3895	31.927	31.728	32.118	-0.19261	-0.069199	0.0029415	NaN	49.442	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46530			38319	18361	26286	26340							0.04007705503283887
LDPMALQTLQ	10	Unmodified	_LDPMALQTLQ_					0	0	0		ENST00000494388.1_1_3:11885478-11888134:-|nuORF	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.352294921875	2	565.299724	1128.5849	-0.071089	-4.0187E-05	-4.0777	-0.0023051	-4.1488	-0.0023453	565.29761098086	87.379	0.66858	87.241	86.704	87.373	-0.13734					20	15	2	0	0	0	0.03519	1	10558	10558		42.864	7.246	1	100530			38320	15528	26287	26341	43894	43894					0.025746350514964433
LDPSIKKT	8	Unmodified	_LDPSIKKT_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2597351074219	2	451.271293	900.528032	-0.24819	-0.000112	0.19326	8.7214E-05	-0.05493	-2.4788E-05	451.2713217630884	40.015	0.52805	39.903	39.715	40.243	-0.11223					21	13	2	0	0	0	0.027866	1	3494	3494		62.107	0	1	110160			38321	2050	26288	26342	43895	43895					0.07378955557271638
LDPTQRILY	9	Unmodified	_LDPTQRILY_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8157958984375	2	559.813856	1117.61316	-0.54513	-0.00030517	3.5584	0.0019921	3.0133	0.0016869	559.8157653628313	80.904	2.796	80.904	79.911	82.707	0					244	67	6	0	0	0	0.6504	1	10090	10090		49.442	1.5259	1	11331000			38322	11062	26289	26343	43896	43896					0.05905701023107213
LDPTQRILY	9	Unmodified	_LDPTQRILY_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8163452148438	2	559.813856	1117.61316	-0.85269	-0.00047735	3.8179	0.0021373	2.9652	0.00166	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.35646	1	10007	10007		68.787	10.976	1	10426000			38323	11062	26289	26343	43897	43897					0.05905701023107213
LDPTQRILY	9	Unmodified	_LDPTQRILY_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8148803710938	2	559.813856	1117.61316	0.050072	2.8031E-05	2.9997	0.0016793	3.0498	0.0017073	559.8155046600118	80.867	2.2167	80.629	80.287	82.504	-0.23784					212	52	6	0	0	0	0.50848	1	9797	9797		58.782	0.55203	1	31546000			38324	11062	26289	26343	43898	43898					0.05905701023107213
LDPTQRILY	9	Unmodified	_LDPTQRILY_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8148193359375	2	559.813856	1117.61316	0.27362	0.00015318	2.6498	0.0014834	2.9234	0.0016366	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.35646	3	9768	9684;9706;9768		68.787	5.8453	1	35108000			38325	11062	26289	26343	43899;43900;43901	43901					0.05905701023107213
LDPTQRILY	9	Unmodified	_LDPTQRILY_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8158569335938	2	559.813856	1117.61316	-0.4095	-0.00022924	3.3497	0.0018752	2.9402	0.001646	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.50848	1	9714	9714		58.782	8.7574	1	31806000			38326	11062	26289	26343	43902	43902					0.05905701023107213
LDPVSEDPE	9	Unmodified	_LDPVSEDPE_					0	0	0		ENSG00000198816|ENST00000597229|ZNF358	ENSG00000198816|ENST00000597229|ZNF358	ENSG00000198816|ENST00000597229|ZNF358	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.78741455078125	2	500.727112	999.439671	-1.5531	-0.00077768	-0.69401	-0.00034751	-2.2471	-0.0011252	500.7253894916036	60.183	0.15282	60.262	60.127	60.28	0.078888					5	3	2	0	0	0	0.024541	1	6830	6830		17.365	0	1	38489			38327	10210	26290	26344	43903	43903					-0.06007129543843348
LDQAQRDLY	9	Unmodified	_LDQAQRDLY_					0	0	0		ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2431030273438	2	561.28292	1120.55129	0.055715	3.1272E-05	3.5845	0.0020119	3.6402	0.0020432	561.2849188868572	76.458	0.91216	76.207	75.829	76.741	-0.25162					49	21	3	0	0	0	0.024374	1	9043	9043		49.442	12.282	1	823230			38328	9901	26291	26345	43904	43904					-0.004166503960504997
LDQAQRDLY	9	Unmodified	_LDQAQRDLY_					0	0	0		ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.28292	1120.55129	-0.65999	-0.00037044	7.3474	0.004124	6.6874	0.0037535	561.2877404085231	76.075	0.57218	76.075	75.696	76.268	0	-0.048639	0.0038585	NaN	49.442	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113680			38329	9901	26291	26345							-0.004166503960504997
LDQAQRDLY	9	Unmodified	_LDQAQRDLY_					0	0	0		ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	561.28292	1120.55129	-0.67989	-0.00038161	6.0987	0.0034231	5.4188	0.0030415	561.2864190617655	76.242	0.27241	76.014	75.927	76.199	-0.22843	-0.10964	0.0024567	NaN	49.442	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78839			38330	9901	26291	26345							-0.004166503960504997
LDQAQRDLY	9	Unmodified	_LDQAQRDLY_					0	0	0		ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	561.28292	1120.55129	0.089481	5.0224E-05	6.2595	0.0035134	6.349	0.0035636	561.2863816915628	76.134	0.26765	76.146	75.976	76.244	0.011635	0.021845	0.0026373	NaN	49.442	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99842			38331	9901	26291	26345							-0.004166503960504997
LDQAQRDLY	9	Unmodified	_LDQAQRDLY_					0	0	0		ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	561.28292	1120.55129	-0.22476	-0.00012616	3.8633	0.0021684	3.6386	0.0020423	561.2850789749334	76.251	0.91542	76.082	75.778	76.693	-0.16853	-0.041513	-5.2587E-05	NaN	49.442	46	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	655300			38332	9901	26291	26345							-0.004166503960504997
LDQDSKLYI	9	Unmodified	_LDQDSKLYI_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3106079101562	2	547.790047	1093.56554	-0.41865	-0.00022933	1.6702	0.00091491	1.2515	0.00068558	548.2910867469495	67.476	0.63115	67.476	67.088	67.719	0					18	15	2	0	0	0	0.024484	1	8070	8070		37.812	11.119	1	105030	+		38333	24799	26292	26346	43905	43905					0.022500020322468117
LDQGQRLNN	9	Unmodified	_LDQGQRLNN_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297607421875	2	529.272887	1056.53122	-0.18081	-9.57E-05	-2.9659	-0.0015698	-3.1467	-0.0016655	529.2713225288718	52.346	0.38964	52.199	52.057	52.447	-0.14735					14	9	3	0	0	0	0.023454	1	5563	5563		71.877	2.2498	1	125140			38334	3767	26293	26347	43906	43906					0.0052159866399961174
LDQILFFPY	9	Unmodified	_LDQILFFPY_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MSMS	OPSCC_40_ClassI_Rep-2	5	578.3075561523438	2	578.307875	1154.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.31	1	110.17	109.67	110.67	-0.13983								0	0	0	0.70893	1	13529	13529		18.324	0.062328	1		+		38335	21003	26294	26348	43907	43907					0.030080842799179663
LDQKYKMHEL	10	Unmodified	_LDQKYKMHEL_					0	0	0		CON__ENSEMBL:ENSBTAP00000013050	CON__ENSEMBL:ENSBTAP00000013050	CON__ENSEMBL:ENSBTAP00000013050	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.80242919921875	3	435.560429	1303.65946	-0.16852	-7.3401E-05	3.0573	0.0013316	2.8888	0.0012582	435.56177361482173	66.199	0.43809	65.958	65.748	66.186	-0.24145					15	10	2	0	0	0	0.03519	1	7577	7577		20.837	7.3292	1	83848		+	38336	483	26295	26349	43908	43908					0.01977397862901853
LDQLEKGGQ	9	Unmodified	_LDQLEKGGQ_					0	0	0		SERPIND1|p.E33Q|1|0.13|ENSG00000099937|chr22:20779409-20779409|G/C|missense_variant	SERPIND1|p.E33Q|1|0.13|ENSG00000099937|chr22:20779409-20779409|G/C|missense_variant	SERPIND1|p.E33Q|1|0.13|ENSG00000099937|chr22:20779409-20779409|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7747802734375	2	494.258914	986.503274	0.05707	2.8208E-05	0.11822	5.8429E-05	0.17529	8.6636E-05	494.2590648233449	50.021	0.46959	49.87	49.596	50.065	-0.1512					25	12	3	0	0	0	0.020937	1	5156	5156		77.318	5.4401	1	376520			38337	37868	26296	26350	43909	43909					0.009482756839247486
LDQLKEVFQWK	11	Unmodified	_LDQLKEVFQWK_					0	0	0			REV__ENSG00000104889|ENST00000221486|RNASEH2A	REV__ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.8160705566406	3	478.59776	1432.77145	1.0109	0.00048383	3.1332	0.0014996	4.1442	0.0019834	478.5990868020297	49.248	0.28951	49.248	49.072	49.362	0					11	7	2	0	0	0	0.024797	1	5080	5080		25.892	6.2648	1	143890	+		38338	21479	26297	26351	43910	43910					0.0723757521150219
LDQLQKTK	8	Unmodified	_LDQLQKTK_					0	0	0			REV__ENSG00000187672|ENST00000288221|ERC2	REV__ENSG00000187672|ENST00000288221|ERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2875671386719	2	487.287474	972.560395	-1.255	-0.00061155	0.88578	0.00043163	-0.36924	-0.00017993	487.28782199279004	38.617	1.0433	38.438	38.17	39.213	-0.17929					59	28	4	0	0	0	0.34573	1	3194	3194		104.75	1.9732	1	5786000	+		38339	27956	26298	26352	43911	43911					0.07301742960282809
LDQNVQET	8	Unmodified	_LDQNVQET_					0	0	0			REV__nc|ENSG00000100889|Q16822-3|PCK2	REV__nc|ENSG00000100889|Q16822-3|PCK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7555236816406	2	473.727446	945.44034	0.34666	0.00016422	0.18727	8.8716E-05	0.53394	0.00025294	473.72752830183896	43.057	0.4371	42.918	42.737	43.174	-0.13929					20	11	2	0	0	0	0.027866	1	3980	3980		34.173	7.1252	1	527040	+		38340	21159	26299	26353	43912	43912					-0.03456290104134041
LDQPDPLLL	9	Unmodified	_LDQPDPLLL_					0	0	0			REV__ENST00000434603.2_1_11:75316186-75316648:-|nuORF	REV__ENST00000434603.2_1_11:75316186-75316648:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.253662109375	2	512.289682	1022.56481	-0.58631	-0.00030036	1.7622	0.00090274	1.1759	0.00060238	512.2912549971264	54.255	0.51608	54.255	53.976	54.492	0					21	14	2	0	0	0	0.024418	1	5918	5918		37.812	7.3079	1	198980	+		38341	32427	26300	26354	43913	43913					0.05443207383189019
LDQPILQVD	9	Unmodified	_LDQPILQVD_					0	0	0			REV__ENSG00000187045|ENST00000676104|TMPRSS6	REV__ENSG00000187045|ENST00000676104|TMPRSS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8182983398438	2	520.784764	1039.55498	0.12156	6.3305E-05	-0.20065	-0.0001045	-0.079095	-4.1191E-05	520.7847911367764	71.216	0.89811	71.216	70.744	71.642	0					35	22	2	0	0	0	0.02435	1	8613	8613		34.173	0	1	1331900	+		38342	27907	26301	26355	43914	43914					0.03678019377821329
LDQRQKEL	8	Unmodified	_LDQRQKEL_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8028564453125	2	515.288005	1028.56146	-0.35787	-0.00018441	-3.5195	-0.0018136	-3.8774	-0.001998	515.287199563786	59.511	0.22663	59.597	59.501	59.728	0.085682					7	5	2	0	0	0	0.027866	1	6729	6729		20.947	0	1	121550	+		38343	36925	26302	26356	43915	43915					0.04831957329201941
LDQSFPPPVY	10	Unmodified	_LDQSFPPPVY_					0	0	0			REV__ENSG00000079557|ENST00000226355|AFM	REV__ENSG00000079557|ENST00000226355|AFM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.79248046875	2	581.792589	1161.57063	-0.12266	-7.1364E-05	-0.74609	-0.00043407	-0.86876	-0.00050544	581.7921555554541	77.754	0.97861	77.492	77.226	78.205	-0.26202					49	22	3	0	0	0	1.0271	1	9256	9256		42.396	1.618	1	1887200	+		38344	20640	26303	26357	43916	43916					-0.003696941051430258
LDQSFPPPVY	10	Unmodified	_LDQSFPPPVY_					0	0	0			REV__ENSG00000079557|ENST00000226355|AFM	REV__ENSG00000079557|ENST00000226355|AFM	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	581.792589	1161.57063	-0.12266	-7.1364E-05	-0.74609	-0.00043407	-0.86876	-0.00050544	581.7921555554541	77.754	0.97861	77.492	77.226	78.205	-0.26202	0.012267	-0.00024491	NaN	42.396	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1887200	+		38345	20640	26303	26357							-0.003696941051430258
LDQSFPPPVY	10	Unmodified	_LDQSFPPPVY_					0	0	0			REV__ENSG00000079557|ENST00000226355|AFM	REV__ENSG00000079557|ENST00000226355|AFM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.792589	1161.57063	0.065906	3.8344E-05	-0.72877	-0.000424	-0.66287	-0.00038565	581.7920646942414	77.727	0.97511	77.484	77.148	78.123	-0.24232	0.0050468	-0.00022476	NaN	42.396	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1435400	+		38346	20640	26303	26357							-0.003696941051430258
LDQSFPPPVY	10	Unmodified	_LDQSFPPPVY_					0	0	0			REV__ENSG00000079557|ENST00000226355|AFM	REV__ENSG00000079557|ENST00000226355|AFM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.792589	1161.57063	-0.72084	-0.00041938	-0.10986	-6.3913E-05	-0.83069	-0.00048329	581.7924382807075	77.624	0.98004	77.462	77.225	78.205	-0.16196	-0.017314	0.0004954	NaN	42.396	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1008000	+		38347	20640	26303	26357							-0.003696941051430258
LDQTHHIV	8	Unmodified	_LDQTHHIV_					0	0	0			REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.7555236816406	2	481.756341	961.498129	2.2449	0.0010815	-3.1258	-0.0015059	-0.88093	-0.00042439	481.75455723450597	24.26	0.4358	24.079	23.938	24.374	-0.18089					17	9	2	0	0	0	0.845	1	1015	1015		55.504	2.1528	1	1166100	+		38348	37277	26304	26358	43917	43917					0.01584016611957395
LDQTHHIV	8	Unmodified	_LDQTHHIV_					0	0	0			REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.756341	961.498129	0.27394	0.00013197	-1.9979	-0.00096251	-1.724	-0.00083053	481.7546317489116	24.413	0.68399	24.198	23.822	24.506	-0.2151	0.08986	0.00048191	NaN	55.504	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376300	+		38349	37277	26304	26358							0.01584016611957395
LDQTHHIV	8	Unmodified	_LDQTHHIV_					0	0	0			REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.756341	961.498129	-0.22729	-0.0001095	-1.4046	-0.00067669	-1.6319	-0.00078618	481.754765751731	24.223	0.76872	24.048	23.699	24.468	-0.17484	-0.060342	0.0010535	NaN	55.504	36	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146800	+		38350	37277	26304	26358							0.01584016611957395
LDQTHHIV	8	Unmodified	_LDQTHHIV_					0	0	0			REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	REV__NFKB2|p.A514T|1|0.33|ENSG00000077150|chr10:102400150-102400150|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	481.756341	961.498129	2.2449	0.0010815	-3.1258	-0.0015059	-0.88093	-0.00042439	481.75455723450597	24.26	0.4358	24.079	23.938	24.374	-0.18089	-0.029518	-0.00060484	NaN	55.504	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1166100	+		38351	37277	26304	26358							0.01584016611957395
LDQVGLSKL	9	Unmodified	_LDQVGLSKL_					0	0	0			REV__nc|ENSG00000140829|Q92620-2|DHX38	REV__nc|ENSG00000140829|Q92620-2|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.79071044921875	2	486.78985	971.565146	-0.45596	-0.00022196	-0.20802	-0.00010126	-0.66398	-0.00032322	486.7895384013792	31.926	0.62965	31.926	31.71	32.34	0					34	15	3	0	0	0	0.32811	1	2169	2169		71.877	4.9155	1	1480500	+		38352	24043	26305	26359	43918	43918					0.07822627103041668
LDQVKKII	8	Unmodified	_LDQVKKII_					0	0	0			REV__nc|ENSG00000159640|P12821-2|ACE;REV__nc|ENSG00000159640|P12821-4|ACE	REV__nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.277587890625	2	478.810585	955.606617	0.035863	1.7172E-05	0.60328	0.00028886	0.63915	0.00030603	478.8105091276444	80.778	0.5288	80.632	80.368	80.897	-0.146					20	12	2	0	0	0	0.027866	1	9716	9716		37.159	0	1	110860	+		38353	25266;36830	26306	26360	43919	43919					0.12703807862385474
LDQVNGQVV	9	Unmodified	_LDQVNGQVV_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2615966796875	2	486.261456	970.50836	-0.92067	-0.00044769	0.6542	0.00031811	-0.26647	-0.00012957	486.2616687740074	38.218	0.94033	38.136	37.883	38.823	-0.082512					63	25	4	0	0	0	0.39228	1	3167	3167		66.429	5.4573	1	5686700			38354	7698	26307	26361	43920	43920					0.021925795465335796
LDQYRDQY	8	Unmodified	_LDQYRDQY_					0	0	0			REV__ENSG00000140990|ENST00000268668|NDUFB10	REV__ENSG00000140990|ENST00000268668|NDUFB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.7726440429688	2	550.753995	1099.49344	-0.92247	-0.00050806	0.42302	0.00023298	-0.49945	-0.00027508	550.7539463650411	48.764	0.50281	48.484	48.253	48.756	-0.27977					23	13	2	0	0	0	0.027866	1	4882	4882		49.442	13.823	1	289510	+		38355	24054	26308	26362	43921	43921					-0.052329123214803985
LDQYRDQY	8	Unmodified	_LDQYRDQY_					0	0	0			REV__ENSG00000140990|ENST00000268668|NDUFB10	REV__ENSG00000140990|ENST00000268668|NDUFB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.77294921875	2	550.753995	1099.49344	-0.23312	-0.00012839	-0.090538	-4.9864E-05	-0.32366	-0.00017826	550.7537226183398	48.56	0.50539	48.378	48.162	48.667	-0.18206					23	13	2	0	0	0	0.027866	1	4865	4865		42.396	0	1	260610	+		38356	24054	26308	26362	43922	43922					-0.052329123214803985
LDRAAAAVEP	10	Unmodified	_LDRAAAAVEP_					0	0	0		ENST00000526043.1_1_15:101815456-101816896:-|nuORF;ENST00000529968.1_1_15:101815456-101817667:-|nuORF;ENST00000527833.5_1_15:101814760-101817622:-|nuORF;ENST00000531964.5_1_15:101812984-101817507:-|nuORF;ENST00000398226.7_1_15:101812984-101817622:-|nuORF;ENSG00000131871|ENST00000526049|SELENOS	ENST00000526043.1_1_15:101815456-101816896:-|nuORF	ENST00000526043.1_1_15:101815456-101816896:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.79248046875	2	506.774731	1011.53491	-1.2877	-0.00065256	-4.3441	-0.0022015	-5.6317	-0.002854	506.7726956083762	44.165	0.47199	44.165	43.91	44.382	0					25	13	3	0	0	0	0.03519	1	4189	4189		69.628	0	1	1769700			38357	4557	26309	26363	43923	43923					0.029602684378460253
LDRDDGAKKV	10	Unmodified	_LDRDDGAKKV_					0	0	0		ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.8036499023438	2	558.80402	1115.59349	-0.32672	-0.00018257	-0.41019	-0.00022922	-0.73691	-0.00041179	558.8037595247166	49.189	0.89643	48.909	48.538	49.434	-0.27977					69	23	4	0	0	0	0.88896	1	4924	4924		54.776	3.4409	1	7262600			38358	7308	26310	26364	43924	43924					0.040313250123290345
LDREEIPE	8	Unmodified	_LDREEIPE_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000113212|ENST00000231137|PCDHB7	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000113212|ENST00000231137|PCDHB7	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7869873046875	2	500.750921	999.48729	-0.10125	-5.0702E-05	-2.0446	-0.0010238	-2.1458	-0.0010745	500.748430679291	60.348	0.33263	60.348	60.104	60.437	0					13	8	2	0	0	0	0.027866	1	6931	6931		37.159	1.5408	1	114780			38359	10871;3270	26311	26365	43925	43925					-0.012474305529849516
LDREKSAI	8	Unmodified	_LDREKSAI_					0	0	0			REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2638854980469	2	466.263999	930.513445	-0.31042	-0.00014474	0.030848	1.4384E-05	-0.27957	-0.00013035	466.2639464302224	30.632	0.50333	30.388	30.079	30.582	-0.24415					23	11	3	0	0	0	0.64735	1	1975	1975		71.877	5.4482	1	928850	+		38360	19863	26312	26366	43926	43926					0.04540883409140406
LDREKSAI	8	Unmodified	_LDREKSAI_					0	0	0			REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2637939453125	2	466.263999	930.513445	-0.26773	-0.00012483	0.031504	1.4689E-05	-0.23623	-0.00011014	466.2640157046124	30.558	0.62908	30.408	30.18	30.809	-0.14952					23	14	2	0	0	0	0.64735	1	1944	1944		71.877	5.4482	1	955030	+		38361	19863	26312	26366	43927	43927					0.04540883409140406
LDREKSAI	8	Unmodified	_LDREKSAI_					0	0	0			REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	466.263999	930.513445	-0.31042	-0.00014474	0.030848	1.4384E-05	-0.27957	-0.00013035	466.2639464302224	30.632	0.50333	30.388	30.079	30.582	-0.24415	0.0040229	-0.0001019	NaN	71.877	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	928850	+		38362	19863	26312	26366							0.04540883409140406
LDREKSAI	8	Unmodified	_LDREKSAI_					0	0	0			REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.263999	930.513445	-0.5824	-0.00027155	0.46808	0.00021825	-0.11432	-5.3301E-05	466.2641326538513	30.534	0.66712	30.356	30.083	30.75	-0.17818	-0.02831	0.00030583	NaN	71.877	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	929700	+		38363	19863	26312	26366							0.04540883409140406
LDREKSAI	8	Unmodified	_LDREKSAI_					0	0	0			REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	466.263999	930.513445	-0.26773	-0.00012483	0.031504	1.4689E-05	-0.23623	-0.00011014	466.2640157046124	30.558	0.62908	30.408	30.18	30.809	-0.14952	0.024287	-0.00010129	NaN	71.877	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955030	+		38364	19863	26312	26366							0.04540883409140406
LDRHVRLT	8	Unmodified	_LDRHVRLT_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.32403564453125	2	505.298707	1008.58286	-0.344	-0.00017382	-1.484	-0.00074984	-1.828	-0.00092366	505.7991031032444	79.029	0.16676	78.856	78.736	78.902	-0.17226					5	3	2	0	0	0	0.027866	1	9749	9749		11.511	0	1	77176	+		38365	23795	26313	26367	43928	43928					0.0789138714856108
LDRIIIEDA	9	Unmodified	_LDRIIIEDA_					0	0	0			REV__nc|ENSG00000169344|P07911-2|UMOD	REV__nc|ENSG00000169344|P07911-2|UMOD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2777099609375	2	529.298039	1056.58152	-0.6879	-0.0003641	0.66466	0.0003518	-0.023244	-1.2303E-05	529.2982239832737	57.784	0.39426	57.606	57.281	57.675	-0.17775					18	9	3	0	0	0	0.024523	1	6330	6330		15.642	0.77694	1	283310	+		38366	26357	26314	26368	43929	43929					0.055497082691545074
LDRISTEELPK	11	Unmodified	_LDRISTEELPK_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;KMT2D|p.Q3158Pfs*2|1|0.25|ENSG00000167548|chr12:49037880-49037883|CTCT/-|frameshift_variant;KMT2D|p.P3156Afs*20|1|0.6|ENSG00000167548|chr12:49037891-49037892|-/T|frameshift_variant;KMT2D|p.T3053Yfs*2|1|0.34|ENSG00000167548|chr12:49038199-49038200|-/A|frameshift_variant;KMT2D|p.V3089Wfs*30|2|0.5|ENSG00000167548|chr12:49038091-49038091|C/-|frameshift_variant;KMT2D|p.P2218Lfs*46|1|0.22|ENSG00000167548|chr12:49041117-49041117|G/-|frameshift_variant;KMT2D|p.R2282Gfs*4|1|0.15|ENSG00000167548|chr12:49040926-49040926|G/-|frameshift_variant;KMT2D|p.S2512Ifs*26|1|0.55|ENSG00000167548|chr12:49040220-49040235|TTGGGGGGCTGCCCAC/-|frameshift_variant;KMT2D|p.K2548Tfs*103|1|0.15|ENSG00000167548|chr12:49040117-49040127|GACAGGGGGCT/-|frameshift_variant;KMT2D|p.F2739Lfs*18|1|0.26|ENSG00000167548|chr12:49039450-49039450|G/-|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7798156738281	3	434.241753	1299.70343	-0.46606	-0.00020238	2.196	0.00095359	1.7299	0.00075121	434.2428058695771	40.376	0.25399	40.226	40.004	40.258	-0.1497					8	6	2	0	0	0	0.024777	1	3492	3492		41.109	5.9308	1	131810			38367	7698	26315	26369	43930	43930					0.06556705560842602
LDRKTAEL	8	Unmodified	_LDRKTAEL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.27154541015625	2	473.271824	944.529095	-0.2799	-0.00013247	0.27077	0.00012815	-0.0091222	-4.3173E-06	473.27183540963586	34.96	1.0319	34.747	34.44	35.472	-0.21246					51	25	4	0	0	0	0.47665	1	2608	2608		87.754	5.4493	1	2414100	+		38368	23795	26316	26370	43931	43931					0.05461169926195453
LDRKWKRK	8	Unmodified	_LDRKWKRK_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14;nc|ENSG00000106443|O94880-2|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.3140869140625	2	565.351274	1128.688	-0.94497	-0.00053424	4.2391	0.0023966	3.2942	0.0018624	565.353805901452	36.42	0.28438	36.377	36.244	36.529	-0.042454					14	7	3	0	0	0	0.027866	1	2857	2857		25.45	2.4077	1	136780			38369	2789	26317	26371	43932	43932					0.12879928344977998
LDRLGPLRNIL	11	Unmodified	_LDRLGPLRNIL_					0	0	0			REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2646179199219	3	427.266345	1278.7772	-0.45996	-0.00019653	-4.0555	-0.0017328	-4.5154	-0.0019293	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0592	1	5869	5869		22.562	0.87584	1	57851000	+		38370	20840	26318	26372	43933	43933					0.1489671851386447
LDRLLIKSL	9	Unmodified	_LDRLLIKSL_					0	0	0			REV__ENST00000379868.5_1_9:32477114-32480273:-|nuORF	REV__ENST00000379868.5_1_9:32477114-32480273:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.80029296875	2	535.850242	1069.68593	-0.54077	-0.00028977	-1.4803	-0.00079324	-2.0211	-0.001083	535.8490489600879	55.525	0.52161	55.295	55.096	55.618	-0.23087					21	14	2	0	0	0	0.024427	1	5935	5935		26.693	0	1	209830	+		38371	31449	26319	26373	43934	43934					0.1538745481652768
LDRLLVHLQ	9	Unmodified	_LDRLLVHLQ_					0	0	0		nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3;ENST00000571638.1_1_16:67233883-67235295:+|nuORF	nc|ENSG00000102890|Q96BJ8-2|ELMO3	nc|ENSG00000102890|Q96BJ8-2|ELMO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7798461914062	2	553.837665	1105.66078	-0.86923	-0.00048141	3.8807	0.0021493	3.0115	0.0016679	553.8395332158734	62.231	0.49908	62.053	61.804	62.304	-0.17782					30	12	3	0	0	0	0.024541	1	7038	7038		17.365	0	1	465800			38372	2437	26320	26374	43935	43935					0.11217400013947554
LDRLVSGL	8	Unmodified	_LDRLVSGL_					0	0	0			REV__ENSG00000068400|ENST00000376423|GRIPAP1	REV__ENSG00000068400|ENST00000376423|GRIPAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7637939453125	2	436.763635	871.512717	-0.30614	-0.00013371	0.57047	0.00024916	0.26434	0.00011545	436.7637826825393	26.882	0.98042	26.714	26.379	27.359	-0.16816					52	22	4	0	0	0	0.68164	1	1433	1433		68.787	0	1	2005400	+		38373	20378	26321	26375	43936	43936					0.07182088760112038
LDRLVSGL	8	Unmodified	_LDRLVSGL_					0	0	0			REV__ENSG00000068400|ENST00000376423|GRIPAP1	REV__ENSG00000068400|ENST00000376423|GRIPAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7640686035156	2	436.763635	871.512717	-0.043406	-1.8958E-05	0.22025	9.6199E-05	0.17685	7.7241E-05	436.76361114986486	26.98	1.0193	26.823	26.586	27.605	-0.15664					55	23	4	0	0	0	0.56592	1	1415	1415		79.451	2.6044	1	2220400	+		38374	20378	26321	26375	43937	43937					0.07182088760112038
LDRLVTDV	8	Unmodified	_LDRLVTDV_					0	0	0		nc|ENSG00000076716|O75487-2|GPC4;ENSG00000076716|ENST00000370828|GPC4	nc|ENSG00000076716|O75487-2|GPC4	nc|ENSG00000076716|O75487-2|GPC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.76715087890625	2	465.766374	929.518196	0.50398	0.00023474	-0.050575	-2.3556E-05	0.45341	0.00021118	465.7662082364562	33.774	0.87074	33.83	33.577	34.448	0.056572					39	21	2	0	0	0	0.4075	1	2420	2420		96.19	19.416	1	1438100			38375	1590	26322	26376	43938	43938					0.05061767551922003
LDRLWPVTG	9	Unmodified	_LDRLWPVTG_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.773681640625	2	528.795466	1055.57638	-0.4138	-0.00021882	-1.9823	-0.0010482	-2.3961	-0.001267	528.7948283000426	31.951	0.47826	32.02	31.766	32.244	0.068962					36	11	4	0	0	0	0.024263	1	2112	2112		34.173	0	1	401100	+		38376	23610	26323	26377	43939	43939					0.0508144919717779
LDRQATPSP	9	Unmodified	_LDRQATPSP_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2587585449219	2	492.759081	983.503609	0.447	0.00022026	-1.092	-0.00053808	-0.64497	-0.00031781	492.75840826502076	42.119	1.6311	42.119	41.119	42.75	0					81	46	3	0	0	0	0.024261	1	3749	3749		45.972	11.8	1	2700300			38377	18608	26324	26378	43940	43940					0.01119695403770038
LDRQSENNCV	10	Unmodified	_LDRQSENNCV_					0	0	0		ENST00000352689.10_1_7:131180396-131180510:+|nuORF	ENST00000352689.10_1_7:131180396-131180510:+|nuORF	ENST00000352689.10_1_7:131180396-131180510:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.76806640625	2	589.266944	1176.51934	-0.47261	-0.00027849	4.1447	0.0024423	3.6721	0.0021638	589.269127676366	101.26	0.41696	101.09	100.92	101.33	-0.17178					11	8	2	0	0	0	0.03519	1	12560	12560		18.262	0	1	92954			38378	12606	26325	26379	43941	43941					-0.061863861415076826
LDRTGKGER	9	Unmodified	_LDRTGKGER_					0	0	0		nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B	nc|ENSG00000204389|P0DMV8-2|HSPA1A	nc|ENSG00000204389|P0DMV8-2|HSPA1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.80517578125	2	516.283254	1030.55196	-1.3357	-0.00068961	2.9906	0.001544	1.6549	0.00085439	516.2858211581131	55.702	1.2773	55.8	55.409	56.687	0.098015					51	34	2	0	0	0	0.024397	1	6194	6194		39.253	11.371	1	746300			38379	10339	26326	26380	43942	43942					0.03790189043661485
LDRTLHWL	8	Unmodified	_LDRTLHWL_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2865600585938	2	527.295633	1052.57671	-1.5927	-0.0008398	-3.484	-0.0018371	-5.0767	-0.0026769	527.2940634685019	31.07	0.41953	31.07	30.838	31.257	0					13	9	2	0	0	0	0.027866	1	2059	2059		19.36	0	1	41303	+		38380	20707	26327	26381	43943	43943					0.052528689170458165
LDRTRISP	8	Unmodified	_LDRTRISP_					0	0	0		ENST00000502125.6_1_15:96833953-96870491:-|nuORF	ENST00000502125.6_1_15:96833953-96870491:-|nuORF	ENST00000502125.6_1_15:96833953-96870491:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2802429199219	2	479.277441	956.540328	1.8949	0.0009082	2.791	0.0013376	4.6859	0.0022458	479.27863663895505	59.176	1.1292	58.989	58.538	59.667	-0.18705					88	30	4	0	0	0	0.27973	1	6696	6696		120.62	26.615	1	7579700			38381	15661	26328	26382	43944	43944					0.06031992020314192
LDRVKEIQ	8	Unmodified	_LDRVKEIQ_					0	0	0		nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL;ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;ENST00000487195.5_1_13:46917522-46924493:-|nuORF	nc|ENSG00000102445|Q9H714-3|RUBCNL	nc|ENSG00000102445|Q9H714-3|RUBCNL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7928771972656	2	500.792924	999.571294	0.02379	1.1914E-05	-0.68184	-0.00034146	-0.65805	-0.00032955	500.7924977441126	51.965	1.056	51.781	51.258	52.314	-0.18404					99	27	7	0	0	0	0.78825	1	5381	5381		60.118	1.8883	1	10537000			38382	2408	26329	26383	43945	43945					0.07149145334562945
LDRWKLSVL	9	Unmodified	_LDRWKLSVL_					0	0	0		ENST00000381501.7_1_4:48172320-48172347:-|nuORF	ENST00000381501.7_1_4:48172320-48172347:-|nuORF	ENST00000381501.7_1_4:48172320-48172347:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.3140869140625	2	565.340041	1128.66553	-0.97408	-0.00055069	4.3373	0.0024521	3.3632	0.0019014	565.34288693294	36.385	0.28244	36.342	36.208	36.491	-0.042454					17	7	3	0	0	0	0.024447	1	2857	2857		40.778	17.736	1	93698			38383	13345	26330	26384	43946	43946					0.1063428415668568
LDRWVGPG	8	Unmodified	_LDRWVGPG_					0	0	0			REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2615966796875	2	450.240327	898.466101	-0.4364	-0.00019649	4.0982	0.0018452	3.6618	0.0016487	450.2421079739635	31.07	0.70716	30.885	30.576	31.283	-0.18503					61	17	5	0	0	0	0.027866	1	2077	2077		26.796	7.4361	1	1296400	+		38384	29602	26331	26385	43947	43947					0.01280648928809569
LDRYILDL	8	Unmodified	_LDRYILDL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7707824707031	2	510.78985	1019.56515	-0.93003	-0.00047505	-0.55188	-0.0002819	-1.4819	-0.00075695	510.78940138444176	84.142	0.76811	84.07	83.7	84.468	-0.072769					27	17	2	0	0	0	0.027866	1	10522	10522		138.24	0	1	548230	+		38385	34688	26332	26386	43948	43948					0.056146271030456774
LDRYILDL	8	Unmodified	_LDRYILDL_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.77105712890625	2	510.78985	1019.56515	-0.78393	-0.00040042	-0.16105	-8.2262E-05	-0.94497	-0.00048268	510.78936855153336	84.008	0.85398	84.035	83.684	84.538	0.02655					33	18	3	0	0	0	0.027866	1	10456	10456		138.24	0	1	471580	+		38386	34688	26332	26386	43949	43949					0.056146271030456774
LDSALLAEV	9	Unmodified	_LDSALLAEV_					0	0	0		nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF	nc|ENSG00000164078|Q04912-7|MST1R	nc|ENSG00000164078|Q04912-7|MST1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7599182128906	2	465.760758	929.506963	-0.16862	-7.8535E-05	0.17122	7.9746E-05	0.0025995	1.2107E-06	465.7607631075904	80.445	0.8595	80.299	79.954	80.813	-0.146					51	20	4	0	0	0	0.35646	2	9638	9628;9638		68.787	8.9766	1	871900			38387	7206	26333	26387	43950;43951	43951					0.03938945457775844
LDSDPNPLA	9	Unmodified	_LDSDPNPLA_					0	0	0		ENST00000602477.1_1_1:9299915-9300071:+|nuORF	ENST00000602477.1_1_1:9299915-9300071:+|nuORF	ENST00000602477.1_1_1:9299915-9300071:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.3288879394531	2	471.232364	940.450176	-0.3026	-0.00014259	1.9291	0.00090903	1.6265	0.00076644	471.2332826219003	22.257	0.70779	22.055	21.76	22.468	-0.20198					17	14	2	0	0	0	0.024397	1	791	791		39.253	0	1	27900			38388	17529	26334	26388	43952	43952					-0.02243102098759664
LDSDSGRIAP	10	Unmodified	_LDSDSGRIAP_					0	0	0			REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF	REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.27734375	2	515.76182	1029.50909	-0.051317	-2.6467E-05	-0.37429	-0.00019305	-0.42561	-0.00021951	515.7616040928867	46.062	0.59066	45.965	45.777	46.368	-0.096649					31	15	3	0	0	0	0.03519	1	4418	4418		26.693	0	1	468110	+		38389	31715	26335	26389	43953	43953					-0.00448625804438052
LDSERDRLI	9	Unmodified	_LDSERDRLI_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.8034057617188	2	558.80402	1115.59349	-0.32672	-0.00018257	-0.41019	-0.00022922	-0.73691	-0.00041179	558.8037595247166	49.189	0.89643	48.909	48.538	49.434	-0.27977					69	23	4	0	0	0	0.39228	1	4938	4938		66.429	0	1	7262600			38390	3314	26336	26390	43954	43954					0.04031325012351772
LDSGPGARPS	10	Unmodified	_LDSGPGARPS_					0	0	0		ENST00000409275.1_1_2:85645399-85645495:-|nuORF	ENST00000409275.1_1_2:85645399-85645495:-|nuORF	ENST00000409275.1_1_2:85645399-85645495:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.743896484375	2	478.743431	955.472308	-0.77592	-0.00037147	0.91841	0.00043968	0.14249	6.8214E-05	478.74368549118896	29.594	1.0154	29.672	29.284	30.3	0.078344					72	24	4	0	0	0	0.20166	2	1774	1774;1788		120.87	6.2826	1	6160700			38391	13772	26337	26391	43955;43956	43955					-0.007208776303286868
LDSGSHCPGH	10	Unmodified	_LDSGSHCPGH_					0	0	0			REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3237609863281	2	505.21144	1008.40833	-0.013676	-6.9093E-06	-3.5977	-0.0018176	-3.6114	-0.0018245	505.2100169811571	79.282	0.16138	79.301	79.233	79.394	0.018669					5	3	2	0	0	0	0.03519	1	9754	9754		42.396	0	1	64463	+		38392	28244	26338	26392	43957	43957					-0.09553981058934369
LDSGSSSWTI	10	Unmodified	_LDSGSSSWTI_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR;REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3147583007812	2	526.748379	1051.4822	-1.7038	-0.0008975	-3.9393	-0.002075	-5.6432	-0.0029725	526.746189559594	75.563	0.46316	75.563	75.343	75.806	0					23	12	3	0	0	0	0.03519	1	9259	9259		49.442	0	1	342030	+		38393	25804;34372	26339	26393	43958	43958					-0.0414773441559646
LDSGTLRAL	9	Unmodified	_LDSGTLRAL_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3;REV__CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2713928222656	2	473.271824	944.529095	-0.60406	-0.00028588	0.69305	0.000328	0.088996	4.2119E-05	473.2720586575653	34.917	0.97512	34.73	34.402	35.377	-0.18675					51	24	4	0	0	0	0.18915	1	2583	2583		90.777	0	1	2223000	+		38394	25803;19619	26340	26394	43959	43959					0.05461169926195453
LDSGTLRAL	9	Unmodified	_LDSGTLRAL_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3;REV__CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	473.271824	944.529095	-0.60406	-0.00028588	0.69305	0.000328	0.088996	4.2119E-05	473.2720586575653	34.917	0.97512	34.73	34.402	35.377	-0.18675	-0.023211	0.00027798	NaN	90.777	51	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2223000	+		38395	25803;19619	26340	26394							0.05461169926195453
LDSHAVLGAV	10	Unmodified	_LDSHAVLGAV_					0	0	0			REV__nc|ENSG00000271793|O60506-4|SYNCRIP	REV__nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7923583984375	2	491.271824	980.529095	-0.12067	-5.9282E-05	0.35434	0.00017408	0.23367	0.0001148	491.27200032699636	61.297	0.51644	61.071	60.781	61.298	-0.22663					21	13	2	0	0	0	0.03519	1	7020	7020		53.351	0	1	631360	+		38396	37198	26341	26395	43960	43960					0.038051699261814065
LDSHKRFRRLL	11	Unmodified	_LDSHKRFRRLL_					0	0	0		ENST00000606385.1_1_6:25015429-25015603:-|nuORF	ENST00000606385.1_1_6:25015429-25015603:-|nuORF	ENST00000606385.1_1_6:25015429-25015603:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.9546203613281	3	480.956393	1439.84735	0.60855	0.00029269	-3.8746	-0.0018635	-3.2661	-0.0015708	480.9545421392587	19.688	0.59034	19.527	19.233	19.823	-0.16079					42	11	5	0	0	0	1.0764	1	463	463		17.833	3.5899	1	482930			38397	17564	26342	26396	43961	43961					0.14502016902315518
LDSHTFQLW	9	Unmodified	_LDSHTFQLW_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.782470703125	2	573.782556	1145.55056	-0.37208	-0.00021349	-0.0020392	-1.17E-06	-0.37411	-0.00021466	573.7826166563825	64.424	3.778	64.168	62.634	66.412	-0.25563					213	95	4	0	0	0	0.35646	1	7319	7319		68.787	1.2932	1	6621900			38398	18737	26343	26397	43962	43962					-0.016394450450889053
LDSIEKQT	8	Unmodified	_LDSIEKQT_					0	0	0			REV__ENST00000469195.5_3_6:35227376-35248953:+|nuORF	REV__ENST00000469195.5_3_6:35227376-35248953:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.9282531738281	2	467.248015	932.481476	-0.48312	-0.00022574	2.7672	0.001293	2.284	0.0010672	467.24932310964533	24.031	0.47537	24.031	23.866	24.341	0					17	10	2	0	0	0	0.027866	1	1016	1016		37.159	0	1	101550	+		38399	31281	26344	26398	43963	43963					0.01253470935353107
LDSLGQGIN	9	Unmodified	_LDSLGQGIN_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENSG00000162777|ENST00000357640|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2786560058594	2	458.740357	915.46616	0.45031	0.00020657	-0.85117	-0.00039047	-0.40087	-0.00018389	458.74026730690355	47.52	0.80558	47.367	46.736	47.542	-0.15301					28	21	2	0	0	0	0.023837	1	4720	4720		54.776	13.998	1	162740			38400	6991	26345	26399	43964	43964					0.005046041381547184
LDSLHDSLF	9	Unmodified	_LDSLHDSLF_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3030395507812	2	523.761289	1045.50803	0.87778	0.00045975	-3.2722	-0.0017138	-2.3944	-0.0012541	523.7596999881399	19.946	0.54152	19.723	19.384	19.926	-0.22344					17	10	2	0	0	0	0.024487	1	468	468		31.955	0	1	49603	+		38401	19204	26346	26400	43965	43965					-0.01290840173351171
LDSLRIYL	8	Unmodified	_LDSLRIYL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7926940917969	2	496.792392	991.570232	0.6638	0.00032977	-0.76598	-0.00038053	-0.10217	-5.0758E-05	496.791989989934	71.515	0.95898	71.227	70.802	71.761	-0.28858					52	24	4	0	0	0	0.59392	1	8633	8633		76.847	2.5916	1	2410600			38402	9860	26347	26401	43966	43966					0.07410930965647822
LDSLVREC	8	Unmodified	_LDSLVREC_					0	0	0		ENST00000585164.2_1_17:79994733-79995558:-|nuORF;ENST00000580750.5_1_17:79994503-79995558:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000585164.2_1_17:79994733-79995558:-|nuORF	ENST00000585164.2_1_17:79994733-79995558:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.73883056640625	2	467.73676	933.458967	-0.57377	-0.00026837	4.4262	0.0020703	3.8524	0.0018019	467.73869025984726	26.326	1.6655	26.09	25.72	27.385	-0.23603					66	42	2	0	0	0	0.87148	1	1370	1370		53.351	7.3995	1	3989000			38403	7969	26348	26402	43967	43967					-0.010424517339288286
LDSMKPREI	9	Unmodified	_LDSMKPREI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7903442382812	2	544.792066	1087.56958	-0.12336	-6.7207E-05	-3.8154	-0.0020786	-3.9387	-0.0021458	544.7899729249108	49.267	0.76307	49.267	49.005	49.768	0					60	20	6	0	0	0	0.19099	1	5111	5111		90.37	4.508	1	6077600			38404	8901;16105	26349	26403	43968	43968					0.02929768254307419
LDSPEELEP	9	Unmodified	_LDSPEELEP_					0	0	0		ENSG00000070950|ENST00000264926|RAD18	ENSG00000070950|ENST00000264926|RAD18	ENSG00000070950|ENST00000264926|RAD18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3216552734375	2	514.742762	1027.47097	0.30614	0.00015759	1.7577	0.00090476	2.0638	0.0010623	514.7432271039103	71.37	1.0876	71.37	70.744	71.831	0					72	27	4	0	0	0	0.024506	1	8680	8680		23.042	3.6825	1	1813600			38405	1441	26350	26404	43969	43969					-0.04166556509744623
LDSSAALPGGA	11	Unmodified	_LDSSAALPGGA_					0	0	0		ENST00000409382.7_1_2:107460466-107502632:-|nuORF	ENST00000409382.7_1_2:107460466-107502632:-|nuORF	ENST00000409382.7_1_2:107460466-107502632:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.74566650390625	2	479.745639	957.476725	0.13237	6.3502E-05	0.20232	9.7064E-05	0.33469	0.00016057	479.7455184998032	52.943	0.87505	52.943	52.634	53.509	0					52	23	4	0	0	0	0.25842	1	5699	5699		93.195	15.878	1	1850000			38406	13776	26351	26405	43970	43970					-0.003714132074264853
LDSSGPLHF	9	Unmodified	_LDSSGPLHF_					0	0	0			REV__ENST00000532693.5_3_1:100436132-100440614:+|nuORF	REV__ENST00000532693.5_3_1:100436132-100440614:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2568359375	2	486.742899	971.471246	-0.87091	-0.00042391	-2.7881	-0.0013571	-3.659	-0.001781	486.7413916345665	25.351	0.43769	25.351	25.173	25.611	0					15	10	2	0	0	0	0.024325	1	1218	1218		40.573	0	1	102000	+		38407	32311	26352	26406	43971	43971					-0.015630919992190684
LDSSGPLHF	9	Unmodified	_LDSSGPLHF_					0	0	0			REV__ENST00000532693.5_3_1:100436132-100440614:+|nuORF	REV__ENST00000532693.5_3_1:100436132-100440614:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2568664550781	2	486.742899	971.471246	-0.93383	-0.00045453	-2.5348	-0.0012338	-3.4686	-0.0016883	486.74152470668776	25.406	0.55997	25.371	25.079	25.639	-0.034395					20	13	2	0	0	0	0.024183	1	1203	1203		50.025	5.9077	1	105800	+		38408	32311	26352	26406	43972	43972					-0.015630919992190684
LDSSQSQHA	9	Unmodified	_LDSSQSQHA_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.292236328125	2	486.722695	971.430838	0.56851	0.00027671	3.0567	0.0014877	3.6252	0.0017645	486.7241361357917	60.125	0.64337	59.927	59.537	60.181	-0.19742					23	16	2	0	0	0	0.024477	1	6660	6660		20.947	0.95016	1	287370	+		38409	21662	26353	26407	43973	43973					-0.056020583896497556
LDSTMRFS	8	Unmodified	_LDSTMRFS_					0	0	0			REV__ENSG00000152784|ENST00000415738|PRDM8	REV__ENSG00000152784|ENST00000415738|PRDM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2590026855469	2	478.728935	955.443317	-0.12884	-6.1679E-05	-2.9788	-0.001426	-3.1077	-0.0014877	478.7273710410108	54.617	3.0096	54.715	53.808	56.818	0.098015					111	84	2	0	0	0	0.027866	1	6062	6062		35.618	0	1	565180	+		38410	24864	26354	26408	43974	43974					-0.03618738250975184
LDSYEEASA	9	Unmodified	_LDSYEEASA_					0	0	0			REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	REV__sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.30645751953125	2	492.711462	983.408371	0.3516	0.00017324	0.053667	2.6442E-05	0.40527	0.00019968	492.71144304041803	69.011	0.77541	68.768	68.509	69.284	-0.24277					27	18	2	0	0	0	0.024436	1	8074	8074		16.473	0.83134	1	509690	+		38411	37549	26355	26409	43975	43975					-0.08399702577946755
LDTDLDGVVA	10	Unmodified	_LDTDLDGVVA_					0	0	0		CAPN1|p.T701A|1|0.32|ENSG00000014216|chr11:65210855-65210855|A/G|missense_variant	CAPN1|p.T701A|1|0.32|ENSG00000014216|chr11:65210855-65210855|A/G|missense_variant	CAPN1|p.T701A|1|0.32|ENSG00000014216|chr11:65210855-65210855|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8003845214844	2	509.258579	1016.50261	0.89799	0.00045731	2.6737	0.0013616	3.5717	0.0018189	509.2602276495669	59.66	1.3173	59.66	58.787	60.104	0					78	35	4	0	0	0	0.03519	1	6797	6797		53.351	6.585	1	1075100			38412	210	26356	26410	43976	43976					-0.004985637557979317
LDTEELCEYFS	11	Unmodified	_LDTEELCEYFS_					0	0	0		ENSG00000123119|ENST00000417640|NECAB1;ENST00000521954.1_1_8:91804195-91916096:+|nuORF	ENSG00000123119|ENST00000417640|NECAB1	ENSG00000123119|ENST00000417640|NECAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2066650390625	3	450.191959	1347.55405	-0.49258	-0.00022176	-0.65744	-0.00029597	-1.15	-0.00051773	450.1916956449256	22.791	0.41675	22.606	22.46	22.877	-0.18539					13	8	3	0	0	0	0.024735	1	843	843		27.644	7.3289	1	39993			38413	3958	26357	26411	43977	43977					-0.10582607844048653
LDTETFVVFA	10	Unmodified	_LDTETFVVFA_					0	0	0			REV__ENSG00000164363|ENST00000324642|SLC6A18	REV__ENSG00000164363|ENST00000324642|SLC6A18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2693481445312	2	571.292422	1140.57029	0.52521	0.00030005	-0.50488	-0.00028843	0.020334	1.1617E-05	571.2919165511478	85.091	0.83234	84.888	84.418	85.25	-0.20329					51	19	3	0	0	0	0.03519	1	10271	10271		16.473	2.336	1	252470	+		38414	25747	26358	26412	43978	43978					0.005628861749983116
LDTFLEHI	8	Unmodified	_LDTFLEHI_					0	0	0		nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000131061|ENST00000375200|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2269287109375	2	494.260925	986.507297	-0.47153	-0.00023306	-2.3708	-0.0011718	-2.8424	-0.0014049	494.2590879116759	38.654	0.57536	38.654	38.395	38.97	0					27	14	3	0	0	0	0.027866	1	3245	3245		35.201	0	1	839320			38415	4491	26359	26413	43979	43979					0.01350365177609092
LDTFLEHI	8	Unmodified	_LDTFLEHI_					0	0	0		nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000131061|ENST00000375200|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.260925	986.507297	-0.49892	-0.00024659	-2.7014	-0.0013352	-3.2003	-0.0015818	494.2591625152006	38.594	0.42413	38.512	38.294	38.718	-0.082516	-0.070971	-0.00011345	NaN	35.201	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	741430			38416	4491	26359	26413							0.01350365177609092
LDTFLGMATN	10	Unmodified	_LDTFLGMATN_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8314819335938	2	541.762975	1081.5114	-0.42034	-0.00022772	-2.8114	-0.0015231	-3.2317	-0.0017508	541.7612810672204	76.199	0.66322	76.211	75.825	76.488	0.011635					21	16	2	0	0	0	0.03519	1	9273	9273		36.447	10.873	1	115200	+		38417	24668	26360	26414	43980	43980					-0.026099133909610828
LDTFLGMATN	10	Unmodified	_LDTFLGMATN_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	541.762975	1081.5114	-0.8408	-0.00045551	-1.8977	-0.0010281	-2.7385	-0.0014836	541.7617868222721	76.183	0.47584	76.183	75.956	76.431	0	-0.013924	0.00065019	NaN	36.447	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84580	+		38418	24668	26360	26414							-0.026099133909610828
LDTFNNIDC	9	Unmodified	_LDTFNNIDC_					0	0	0			REV__PEX1|p.K763N|1|0.26|ENSG00000127980|chr7:92502017-92502017|C/G|missense_variant	REV__PEX1|p.K763N|1|0.26|ENSG00000127980|chr7:92502017-92502017|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8450927734375	2	527.729132	1053.44371	-0.53037	-0.00027989	0.46446	0.00024511	-0.065912	-3.4784E-05	527.7292163085144	55.878	0.59818	55.878	55.679	56.277	0					26	16	2	0	0	0	0.024541	1	6178	6178		17.365	0	1	203790	+		38419	37368	26361	26415	43981	43981					-0.08087363321783414
LDTFNNIDC	9	Unmodified	_LDTFNNIDC_					0	0	0			REV__PEX1|p.K763N|1|0.26|ENSG00000127980|chr7:92502017-92502017|C/G|missense_variant	REV__PEX1|p.K763N|1|0.26|ENSG00000127980|chr7:92502017-92502017|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.8447875976562	2	527.729132	1053.44371	-0.48192	-0.00025432	0.70911	0.00037422	0.22719	0.00011989	527.7294233213815	55.99	0.72977	55.834	55.591	56.321	-0.15601					31	19	2	0	0	0	0.024487	1	6167	6167		24.203	10.066	1	224120	+		38420	37368	26361	26415	43982	43982					-0.08087363321783414
LDTIATWEY	9	Unmodified	_LDTIATWEY_					0	0	0		ENST00000313117.10_2_2:38970876-38971032:-|nuORF	ENST00000313117.10_2_2:38970876-38971032:-|nuORF	ENST00000313117.10_2_2:38970876-38971032:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.8057861328125	2	556.268947	1110.52334	-0.71964	-0.00040031	-0.29379	-0.00016343	-1.0134	-0.00056374	556.2689537786299	33.016	0.60114	32.85	32.516	33.117	-0.16565					27	14	3	0	0	0	0.024457	1	2323	2323		29.15	0	1	218410			38421	12094	26362	26416	43983	43983					-0.027499733761487732
LDTIILFPW	9	Unmodified	_LDTIILFPW_					0	0	0			REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2438354492188	2	559.318243	1116.62193	-0.13147	-7.3536E-05	-4.041	-0.0022602	-4.1724	-0.0023337	559.3158767599051	69.905	0.576	69.682	69.432	70.008	-0.22245					28	13	3	0	0	0	0.02309	1	8108	8108		68.485	28.427	1	419100	+		38422	19190	26363	26417	43984	43984					0.06828674659573153
LDTIILFPW	9	Unmodified	_LDTIILFPW_					0	0	0			REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.318243	1116.62193	0.0021106	1.1805E-06	-3.9534	-0.0022112	-3.9512	-0.00221	559.3158992367933	69.95	0.62379	69.699	69.399	70.023	-0.25063	-0.023017	-0.00010031	NaN	68.485	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376740	+		38423	19190	26363	26417							0.06828674659573153
LDTIKQMPD	9	Oxidation (M)	_LDTIKQM(Oxidation (M))PD_		LDTIKQM(1)PD		LDTIKQM(110)PD	0	0	1			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7672729492188	2	538.768257	1075.52196	-1.128	-0.00060773	-1.6528	-0.00089049	-2.7808	-0.0014982	538.7673375791759	83.393	0.90207	83.393	83.051	83.954	0					48	20	3	0	0	0	0.11727	1	10439	10439		106.68	18.506	1	1380200	+		38424	27860	26364	26418	43985	43985		826			-0.012779307365462955
LDTIKQMPD	9	Oxidation (M)	_LDTIKQM(Oxidation (M))PD_		LDTIKQM(1)PD		LDTIKQM(91)PD	0	0	1			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.7666625976562	2	538.768257	1075.52196	-0.27394	-0.00014759	-1.9794	-0.0010665	-2.2534	-0.001214	538.7666447055639	83.419	1.3727	83.328	82.744	84.117	-0.090454					116	31	7	0	0	0	0.18994	1	10410	10410		90.601	23.107	1	1524900	+		38425	27860	26364	26418	43986	43986		826			-0.012779307365462955
LDTIKQMPD	9	Oxidation (M)	_LDTIKQM(Oxidation (M))PD_					0	0	1			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	538.768257	1075.52196	-1.128	-0.00060773	-1.6528	-0.00089049	-2.7808	-0.0014982	538.7673375791759	83.393	0.90207	83.393	83.051	83.954	0	0.051432	6.1744E-05	NaN	106.68	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1380200	+		38426	27860	26364	26418				826			-0.012779307365462955
LDTIKQMPD	9	Oxidation (M)	_LDTIKQM(Oxidation (M))PD_					0	0	1			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	538.768257	1075.52196	-0.27394	-0.00014759	-1.9794	-0.0010665	-2.2534	-0.001214	538.7666447055639	83.419	1.3727	83.328	82.744	84.117	-0.090454	-0.013437	-0.00029019	NaN	106.68	116	31	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1524900	+		38427	27860	26364	26418				826			-0.012779307365462955
LDTIRNSI	8	Unmodified	_LDTIRNSI_					0	0	0			REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.2637939453125	2	466.263999	930.513445	-0.827	-0.0003856	-0.64828	-0.00030227	-1.4753	-0.00068787	466.2637693830354	37.899	1.8394	37.677	37.348	39.188	-0.22149					143	50	5	0	0	0	0.38451	3	3048	3048;3058;3093		99.375	0	1	72322000	+		38428	24203	26365	26419	43987;43988;43989	43987					0.04540883409140406
LDTIRNSI	8	Unmodified	_LDTIRNSI_					0	0	0			REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2632751464844	2	466.263999	930.513445	-1.0918	-0.00050906	-0.32943	-0.0001536	-1.4212	-0.00066266	466.2639071491436	37.918	2.4894	37.699	36.989	39.479	-0.21848					154	67	5	0	0	0	0.38451	2	3063	3063;3075		99.375	0	1	65965000	+		38429	24203	26365	26419	43990;43991	43990					0.04540883409140406
LDTLCALLL	9	Unmodified	_LDTLCALLL_					0	0	0			REV__chrX:152759021-152775072|152|14.72|0.03|9.05|+|1|TE_info:MLT2C2,MLT2C2_dup810,ERVL,LTR,acceptor,+,152775072,152775151|CSAG3,None|2	REV__chrX:152759021-152775072|152|14.72|0.03|9.05|+|1|TE_info:MLT2C2,MLT2C2_dup810,ERVL,LTR,acceptor,+,152775072,152775151|CSAG3,None|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.20318603515625	2	487.783179	973.551804	0.072087	3.5163E-05	3.4667	0.001691	3.5388	0.0017261	487.78526876287754	39.795	0.6949	39.565	39.313	40.008	-0.2302					55	17	5	0	0	0	0.024436	1	3377	3377		30.504	6.3009	1	615870	+		38430	19478	26366	26420	43992	43992					0.06397052999443531
LDTLKENNL	9	Unmodified	_LDTLKENNL_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2890014648438	2	530.287671	1058.56079	-0.97471	-0.00051688	2.4319	0.0012896	1.4571	0.0007727	530.2887112521873	45.69	0.71638	45.539	45.309	46.026	-0.15157					52	20	5	0	0	0	0.5973	1	4468	4468		52.937	3.4007	1	7409300			38431	4458	26367	26421	43993	43993					0.03385117889456524
LDTLLAPSGPG	11	Unmodified	_LDTLLAPSGPG_					0	0	0		nc|ENSG00000082175|P06401-5|PGR;ENSG00000082175|ENST00000325455|PGR	nc|ENSG00000082175|P06401-5|PGR	nc|ENSG00000082175|P06401-5|PGR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7833251953125	2	520.784764	1039.55498	-0.17121	-8.9164E-05	-0.92176	-0.00048004	-1.093	-0.0005692	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	1.0483	1	13658	13658		25.574	2.0514	1	7199700			38432	1725	26368	26422	43994	43994					0.036780193777985914
LDTLLQMSG	9	Unmodified	_LDTLLQMSG_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2892150878906	2	489.252243	976.489932	-0.22856	-0.00011182	-2.6568	-0.0012999	-2.8854	-0.0014117	489.2510281487723	72.164	0.61816	71.888	71.666	72.284	-0.2751					22	14	2	0	0	0	0.024495	1	8418	8418		19.997	0	1	112860			38433	7729	26369	26423	43995	43995					0.00074701580308556
LDTLQRTAN	9	Unmodified	_LDTLQRTAN_					0	0	0		nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30;nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.795166015625	2	516.277638	1030.54072	-0.23542	-0.00012154	3.1553	0.001629	2.9198	0.0015074	516.2792948614373	23.432	0.67623	23.252	22.975	23.651	-0.17989					25	14	2	0	0	0	0.024506	1	976	976		16.473	0	1	395600			38434	3120	26370	26424	43996	43996					0.026673669495039576
LDTLRETQ	8	Unmodified	_LDTLRETQ_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;PPFIA1-RNF167|1|fusion;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;ENST00000550798.1_1_12:82070563-82148000:-|nuORF;PPFIA2|p.V156Wfs*2|1|0.39|ENSG00000139220|chr12:81445660-81445660|C/-|frameshift_variant;nc|ENSG00000139220|O75334-2|PPFIA2	nc|ENSG00000131626|Q13136-2|PPFIA1;PPFIA1-RNF167|1|fusion;nc|ENSG00000139220|O75334-4|PPFIA2	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.27984619140625	2	488.258914	974.503274	-0.42533	-0.00020767	0.80604	0.00039356	0.38071	0.00018589	488.2590362244834	23.036	0.63815	23.036	22.803	23.441	0					30	14	3	0	0	0	0.027866	1	920	920		21.96	9.753	1	331250			38435	4537;18984;5317	26371	26425	43997	43997					0.01500275683918062
LDTLSAIGAL	10	Unmodified	_LDTLSAIGAL_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2838134765625	2	487.281857	972.549162	-0.18934	-9.2264E-05	0.56094	0.00027333	0.37159	0.00018107	487.28169852203405	57.833	0.50585	57.599	57.274	57.78	-0.23363					26	12	3	0	0	0	0.941	1	6319	6319		51.335	0	1	1367400	+		38436	37281;25714	26372	26426	43998	43998					0.06178920866148019
LDTMKPYKVK	10	Unmodified	_LDTMKPYKVK_					0	0	0			REV__ENSG00000101193|ENST00000266069|GID8	REV__ENSG00000101193|ENST00000266069|GID8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.73236083984375	3	408.233653	1221.67913	-0.0051258	-2.0925E-06	-2.2492	-0.00091819	-2.2543	-0.00092028	408.2326434850545	30.438	1.1648	30.447	30.002	31.167	0.0086689					59	27	4	0	0	0	0.03519	1	2036	2036		26.063	3.4837	1	769330	+		38437	21197	26373	26427	43999	43999					0.07715773873610487
LDTNYNINS	9	Unmodified	_LDTNYNINS_					0	0	0			REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7640380859375	2	527.246003	1052.47745	-0.3942	-0.00020784	-1.8706	-0.00098627	-2.2648	-0.0011941	527.2463087613901	62.511	0.31127	62.253	62.057	62.368	-0.25824					13	7	3	0	0	0	0.024427	1	7007	7007		26.693	0	1	283780	+		38438	21830	26374	26428	44000	44000					-0.04668618558389426
LDTPELQLLF	10	Unmodified	_LDTPELQLLF_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	594.8280639648438	2	594.829172	1187.64379	-1.235	-0.00073462	-1.4801	-0.00088041	-2.7151	-0.001615	594.8281841300999	46.713	0.59092	46.713	46.412	47.003	0					48	15	4	0	0	0	0.64538	1	4649	4649		71.877	18.941	1	2071100	+		38439	19836	26375	26429	44001	44001					0.05747434617478575
LDTPELQLLF	10	Unmodified	_LDTPELQLLF_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	594.8273315429688	2	594.829172	1187.64379	-0.39615	-0.00023564	-2.0445	-0.0012161	-2.4407	-0.0014518	594.8277329579435	46.693	0.73184	46.744	46.474	47.206	0.051395					53	19	4	0	0	0	1.0122	1	4580	4580		44.377	4.319	1	2029800	+		38440	19836	26375	26429	44002	44002					0.05747434617478575
LDTPELQLLF	10	Unmodified	_LDTPELQLLF_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	594.829172	1187.64379	-1.235	-0.00073462	-1.4801	-0.00088041	-2.7151	-0.001615	594.8281841300999	46.713	0.59092	46.713	46.412	47.003	0	-0.0045705	0.00014437	NaN	71.877	48	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2071100	+		38441	19836	26375	26429							0.05747434617478575
LDTPELQLLF	10	Unmodified	_LDTPELQLLF_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	594.829172	1187.64379	-1.0055	-0.00059812	-1.5044	-0.00089486	-2.5099	-0.001493	594.8281392602619	46.848	0.78458	46.695	46.376	47.161	-0.15301	-0.021974	0.00011547	NaN	71.877	60	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1706100	+		38442	19836	26375	26429							0.05747434617478575
LDTPELQLLF	10	Unmodified	_LDTPELQLLF_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	594.829172	1187.64379	-0.39615	-0.00023564	-2.0445	-0.0012161	-2.4407	-0.0014518	594.8277329579435	46.693	0.73184	46.744	46.474	47.206	0.051395	0.026544	-0.00052709	NaN	71.877	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2029800	+		38443	19836	26375	26429							0.05747434617478575
LDTPKKPKP	9	Unmodified	_LDTPKKPKP_					0	0	0			REV__ENST00000442440.1_1_20:23337427-23338640:-|nuORF	REV__ENST00000442440.1_1_20:23337427-23338640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7335815429688	2	512.313492	1022.61243	0.45023	0.00023066	-0.63585	-0.00032575	-0.18562	-9.5094E-05	512.3130364534102	59.208	0.76397	58.967	58.738	59.502	-0.24165					42	18	3	0	0	0	0.024292	1	6528	6528		40.778	7.9657	1	577360	+		38444	32562	26376	26430	44003	44003					0.10202906374036047
LDTPLLPVF	9	Unmodified	_LDTPLLPVF_					0	0	0		ENST00000602717.5_1_14:77743417-77745166:-|nuORF	ENST00000602717.5_1_14:77743417-77745166:-|nuORF	ENST00000602717.5_1_14:77743417-77745166:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.81170654296875	2	507.797143	1013.57973	-0.2748	-0.00013954	-2.4391	-0.0012386	-2.7139	-0.0013781	508.29762725461734	45.7	0.45569	45.446	45.291	45.747	-0.25401					20	12	2	0	0	0	0.024443	1	4314	4314		12.959	0	1	215340			38445	17533	26377	26431	44004	44004					0.07348699251178914
LDTPVLEF	8	Unmodified	_LDTPVLEF_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.9280700683594	2	467.250026	932.485499	-0.72479	-0.00033866	-1.1458	-0.00053539	-1.8706	-0.00087405	467.24948549720455	24.053	0.48083	24.006	23.783	24.264	-0.047146					16	10	2	0	0	0	0.027866	1	1006	1006		17.365	0	1	80075	+		38446	25052	26378	26432	44005	44005					0.01655560429048819
LDTRFKVGT	9	Unmodified	_LDTRFKVGT_					0	0	0		ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;nc|ENSG00000039068|P12830-2|CDH1	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.7929077148438	2	518.792924	1035.57129	1.0446	0.00054191	-2.1169	-0.0010982	-1.0723	-0.00055631	518.7918380583922	51.611	1.2954	51.427	51.058	52.354	-0.18404					95	33	5	0	0	0	0.39228	1	5326	5326		66.429	2.8954	1	19497000			38447	1057	26379	26433	44006	44006					0.05493145334571636
LDTRLAAI	8	Unmodified	_LDTRLAAI_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.7637634277344	2	436.763635	871.512717	-0.5177	-0.00022611	0.7102	0.00031019	0.1925	8.4078E-05	436.76382837841277	27.091	0.89476	26.848	26.571	27.466	-0.24217					54	20	4	0	0	0	0.68535	1	1483	1483		68.485	2.6815	1	2563500	+		38448	28872	26380	26434	44007	44007					0.071820887600893
LDTRVVEL	8	Unmodified	_LDTRVVEL_					0	0	0		ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.77392578125	2	472.7742	943.533846	1.0913	0.00051595	-0.77647	-0.00036709	0.31485	0.00014885	472.77367685747765	55.769	0.60617	55.769	55.464	56.07	0					40	16	4	0	0	0	0.80469	1	6183	6183		58.782	0	1	3082400			38449	2680	26381	26435	44008	44008					0.059820540689429436
LDTRVVEL	8	Unmodified	_LDTRVVEL_					0	0	0		ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.77386474609375	2	472.7742	943.533846	-0.48191	-0.00022783	0.92293	0.00043634	0.44102	0.0002085	472.7744499917529	55.564	0.62804	55.662	55.371	55.999	0.098015					38	16	3	0	0	0	0.74904	1	6061	6061		63.306	3.188	1	2836100			38450	2680	26381	26435	44009	44009					0.059820540689429436
LDTSKQAI	8	Unmodified	_LDTSKQAI_					0	0	0		ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.8536376953125	2	438.245275	874.475997	-0.10544	-4.6206E-05	0.16864	7.3908E-05	0.063209	2.7701E-05	438.245308789683	38.283	0.84858	38.064	37.828	38.676	-0.21848					54	23	3	0	0	0	0.027866	1	3215	3215		3.9852	0	1	1589500			38451	10509	26382	26436	44010	44010					0.03373792143509036
LDTWIQCRYCD	11	Unmodified	_LDTWIQCRYCD_					0	0	0		ENST00000491977.1_1_2:89986389-89986853:+|nuORF	ENST00000491977.1_1_2:89986389-89986853:+|nuORF	ENST00000491977.1_1_2:89986389-89986853:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2817687988281	3	472.540929	1414.60096	0.091652	4.3309E-05	-0.70049	-0.00033101	-0.60883	-0.0002877	472.5405817397857	47.231	0.52129	47.134	46.897	47.418	-0.096649					34	13	4	0	0	0	0.024735	1	4607	4607		27.644	0	1	377950			38452	15472	26383	26437	44011	44011					-0.08976026773893864
LDVADQHLL	9	Unmodified	_LDVADQHLL_					0	0	0			REV__ENSG00000213463|ENST00000256366|SYNJ2BP	REV__ENSG00000213463|ENST00000256366|SYNJ2BP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7335815429688	2	512.277106	1022.53966	0.53459	0.00027386	-2.3355	-0.0011964	-1.8009	-0.00092257	512.2759927317029	59.056	0.35587	58.814	58.661	59.017	-0.24165					14	8	2	0	0	0	0.023007	1	6528	6528		66.429	26.371	1	130400	+		38453	28741	26384	26438	44012	44012					0.029291525806115715
LDVCDIPES	9	Unmodified	_LDVCDIPES_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2972412109375	2	495.726058	989.437562	-0.68811	-0.00034111	-2.6347	-0.0013061	-3.3228	-0.0016472	495.7245763798575	54.422	0.28551	54.286	54.183	54.469	-0.13617					12	7	2	0	0	0	0.024436	1	5778	5778		30.504	0	1	137190			38454	8251	26385	26439	44013	44013					-0.05757881553313382
LDVDHDILV	9	Unmodified	_LDVDHDILV_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8187255859375	2	519.776939	1037.53933	-0.24155	-0.00012555	-0.097631	-5.0746E-05	-0.33918	-0.0001763	519.7766904576573	71.181	0.34647	71.192	71.05	71.396	0.010735					12	8	2	0	0	0	0.023635	1	8564	8564		66.429	7.6473	1	152190	+		38455	22458	26386	26440	44014	44014					0.022057328607616
LDVIENNLIDL	11	Unmodified	_LDVIENNLIDL_					0	0	0			REV__EPS15|p.T337I|1|0.2|ENSG00000085832|chr1:51440377-51440377|G/A|missense_variant	REV__EPS15|p.T337I|1|0.2|ENSG00000085832|chr1:51440377-51440377|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.5822448730469	3	424.234487	1269.68163	-0.024215	-1.0273E-05	1.0716	0.00045462	1.0474	0.00044435	424.2349849761707	44.007	0.38823	44.044	43.853	44.241	0.0369					19	10	3	0	0	0	0.024795	1	4118	4118		37.6	0	1	168560	+		38456	36005	26387	26441	44015	44015					0.05757900812295702
LDVIRENH	8	Unmodified	_LDVIRENH_					0	0	0		nc|ENSG00000148690|Q70Z53-2|FRA10AC1;nc|ENSG00000148690|Q70Z53-4|FRA10AC1;nc|ENSG00000148690|Q70Z53-5|FRA10AC1;nc|ENSG00000148690|Q70Z53-3|FRA10AC1;ENSG00000148690|ENST00000359204|FRA10AC1	nc|ENSG00000148690|Q70Z53-2|FRA10AC1	nc|ENSG00000148690|Q70Z53-2|FRA10AC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7963562011719	2	498.267073	994.519593	3.2829	0.0016357	-2.2896	-0.0011408	0.99327	0.00049491	498.2656562479285	18.17	0.29805	17.927	17.776	18.074	-0.24256					9	5	2	0	0	0	0.027866	1	239	239		35.618	19.145	1	20643			38457	6046	26388	26442	44016	44016					0.022114016406590054
LDVKEQLF	8	Unmodified	_LDVKEQLF_					0	0	0			REV__nc|ENSG00000136877|Q05932-3|FPGS	REV__nc|ENSG00000136877|Q05932-3|FPGS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3002014160156	2	496.276575	990.538597	-0.1496	-7.4241E-05	-2.99	-0.0014839	-3.1396	-0.0015581	496.2739536631331	33.219	0.23397	33.019	32.937	33.171	-0.20019					7	5	2	0	0	0	0.027866	1	2355	2355		38.806	0	1	51751	+		38458	23698	26389	26443	44017	44017					0.042949382117285495
LDVKSHLQS	9	Unmodified	_LDVKSHLQS_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3077392578125	2	513.782556	1025.55056	-1.2303	-0.00063212	0.41332	0.00021236	-0.81701	-0.00041977	513.7826230265277	44.381	0.56919	44.236	43.958	44.527	-0.14471					21	16	2	0	0	0	0.024344	1	4241	4241		30.318	4.7437	1	134050	+		38459	27186	26390	26444	44018	44018					0.03880554954912441
LDVKSHLQS	9	Unmodified	_LDVKSHLQS_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.782556	1025.55056	-0.73197	-0.00037607	-0.078385	-4.0273E-05	-0.81035	-0.00041634	513.7820625299918	44.176	0.6898	44.213	43.888	44.578	0.0369	-0.011288	-0.00030088	NaN	42.864	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236270	+		38460	27186	26390	26444							0.03880554954912441
LDVLFSNID	9	Unmodified	_LDVLFSNID_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.3001708984375	2	518.27149	1034.52843	-0.8219	-0.00042597	2.2867	0.0011851	1.4648	0.00075915	518.272483536934	93.577	0.4637	93.583	93.307	93.771	0.0059814					18	10	2	0	0	0	0.024261	1	11785	11785		54.776	5.3348	1	102500			38461	9201	26391	26445	44019	44019					0.012543304864720994
LDVLIARPV	9	Unmodified	_LDVLIARPV_					0	0	0			REV__ENSG00000137267|ENST00000333628|TUBB2A;REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.31622314453125	2	498.316035	994.617516	0.051568	2.5697E-05	-0.17377	-8.6593E-05	-0.1222	-6.0896E-05	498.315858433549	67.171	1.2354	67.195	66.812	68.047	0.023903					61	30	3	0	0	0	0.18915	1	7920	7920		90.777	8.4716	1	4980500	+		38462	23742;33688	26392	26446	44020	44020					0.11999210236660929
LDVLSLKGV	9	Unmodified	_LDVLSLKGV_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2952575683594	2	472.294768	942.574983	-0.3593	-0.00016969	0.99745	0.00047109	0.63815	0.0003014	472.29505103056874	40.561	1.3397	40.412	39.783	41.123	-0.1497					75	35	4	0	0	0	0.11092	1	3527	3527		108.09	11.897	1	5294900	+		38463	28359	26393	26447	44021	44021					0.1013981510842541
LDVLSPLHLTI	11	Unmodified	_LDVLSPLHLTI_					0	0	0		ENST00000505788.5_1_4:77957966-77961048:+|nuORF	ENST00000505788.5_1_4:77957966-77961048:+|nuORF	ENST00000505788.5_1_4:77957966-77961048:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.578857421875	3	407.579818	1219.71762	0.66975	0.00027298	-2.6101	-0.0010638	-1.9403	-0.00079084	407.578775677104	34.474	1.0318	34.474	34.168	35.2	0					74	26	4	0	0	0	0.81748	1	2570	2570		56.632	1.5483	1	5706400			38464	15732	26394	26448	44022	44022					0.11655402779797441
LDVLSPNLI	9	Unmodified	_LDVLSPNLI_					0	0	0		ENST00000590279.1_1_19:12917826-12918144:+|nuORF;ENST00000590121.1_1_19:12917502-12918326:+|nuORF;ENSG00000104889|ENST00000221486|RNASEH2A	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2920837402344	2	492.292225	982.569897	0.87205	0.0004293	-0.88283	-0.00043461	-0.010779	-5.3063E-06	492.2916722699336	70.524	0.38425	70.524	70.316	70.7	0					19	8	3	0	0	0	0.48817	1	8525	8525		60.118	0	1	663030			38465	2615	26395	26449	44023	44023					0.07791511245807214
LDVLSPNLI	9	Unmodified	_LDVLSPNLI_					0	0	0		ENST00000590279.1_1_19:12917826-12918144:+|nuORF;ENST00000590121.1_1_19:12917502-12918326:+|nuORF;ENSG00000104889|ENST00000221486|RNASEH2A	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.292225	982.569897	-0.31099	-0.0001531	0.31396	0.00015456	0.0029692	1.4617E-06	492.29214084037534	70.924	0.41016	70.652	70.471	70.881	-0.27185	0.062901	0.0007829	NaN	60.118	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336170			38466	2615	26395	26449							0.07791511245807214
LDVLSPNLI	9	Unmodified	_LDVLSPNLI_					0	0	0		ENST00000590279.1_1_19:12917826-12918144:+|nuORF;ENST00000590121.1_1_19:12917502-12918326:+|nuORF;ENSG00000104889|ENST00000221486|RNASEH2A	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.292225	982.569897	0.06235	3.0694E-05	0.001251	6.1587E-07	0.063601	3.131E-05	492.29209052764526	70.813	0.41721	70.556	70.411	70.828	-0.25713	-0.033566	0.00047501	NaN	60.118	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327820			38467	2615	26395	26449							0.07791511245807214
LDVLSPNLI	9	Unmodified	_LDVLSPNLI_					0	0	0		ENST00000590279.1_1_19:12917826-12918144:+|nuORF;ENST00000590121.1_1_19:12917502-12918326:+|nuORF;ENSG00000104889|ENST00000221486|RNASEH2A	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	ENST00000590279.1_1_19:12917826-12918144:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.292225	982.569897	0.63809	0.00031413	-1.0414	-0.00051265	-0.40326	-0.00019852	492.2916685986953	70.843	0.32133	70.629	70.461	70.782	-0.21425	0.039164	-0.00055152	NaN	60.118	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258410			38468	2615	26395	26449							0.07791511245807214
LDVPDSGPPVF	11	Unmodified	_LDVPDSGPPVF_					0	0	0		nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENSG00000241839|ENST00000323544|PLEKHO2	nc|ENSG00000241839|Q8TD55-2|PLEKHO2	nc|ENSG00000241839|Q8TD55-2|PLEKHO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.7901000976562	2	571.790047	1141.56554	-0.11844	-6.7723E-05	-1.3881	-0.00079372	-1.5066	-0.00086144	571.789215614259	16.863	0.38177	16.655	16.48	16.862	-0.20777					13	7	3	0	0	0	1.0844	1	112	112		15.642	0	1	70493			38469	10785	26396	26450	44024	44024					0.0004200203222808341
LDVPIRSPD	9	Unmodified	_LDVPIRSPD_					0	0	0			REV__ENSG00000127743|ENST00000261796|IL17B	REV__ENSG00000127743|ENST00000261796|IL17B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2403869628906	2	506.277106	1010.53966	-0.84897	-0.00042981	0.75332	0.00038139	-0.095649	-4.8425E-05	506.2772343459292	30.255	0.54069	30.33	30.003	30.544	0.074316					20	12	2	0	0	0	0.024405	1	1868	1868		35.618	0	1	180330	+		38470	22947	26397	26451	44025	44025					0.03481152580627622
LDVPMWYD	8	Unmodified	_LDVPMWYD_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7692260742188	2	519.733686	1037.45282	-0.39374	-0.00020464	3.057	0.0015888	2.6632	0.0013842	519.735077243988	65.822	0.74007	65.581	65.207	65.947	-0.24145					39	17	4	0	0	0	0.027866	1	7564	7564		33.516	0	1	559910	+		38471	19927	26398	26452	44026	44026					-0.06440969965456134
LDVRGEKG	8	Unmodified	_LDVRGEKG_					0	0	0			REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	REV__nc|ENSG00000120458|Q6P1R3-2|MSANTD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.88140869140625	2	437.243067	872.47158	-0.78427	-0.00034291	0.19008	8.3111E-05	-0.59419	-0.0002598	437.24285450004487	40.512	0.84129	40.282	39.968	40.809	-0.23021					29	22	2	0	0	0	0.027866	1	3463	3463		21.96	0	1	384260	+		38472	22536	26399	26453	44027	44027					0.030243277206295716
LDVSQRNH	8	Unmodified	_LDVSQRNH_					0	0	0		nc|ENSG00000187010|Q02161-4|RHD	nc|ENSG00000187010|Q02161-4|RHD	nc|ENSG00000187010|Q02161-4|RHD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.76678466796875	2	484.749047	967.483542	-0.95181	-0.00046139	2.9095	0.0014104	1.9577	0.00094898	484.7505421730924	34.995	0.21903	34.973	34.866	35.085	-0.021767					8	5	2	0	0	0	0.027866	1	2661	2661		55.504	7.5886	1	189220			38473	18599	26400	26454	44028	44028					-0.0015005553618721024
LDVTRESF	8	Unmodified	_LDVTRESF_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7480773925781	2	483.748182	965.481811	0.14888	7.2023E-05	0.41087	0.00019876	0.55976	0.00027078	483.7483797828883	68.854	1.0611	68.561	68.251	69.312	-0.29266					70	27	4	0	0	0	0.80469	1	8251	8251		58.782	1.3293	1	4096100			38474	18447	26401	26455	44029	44029					-0.0023110934480428114
LDVVIAEKL	9	Unmodified	_LDVVIAEKL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.30682373046875	2	500.307875	998.601197	-0.5618	-0.00028108	0.51345	0.00025688	-0.048352	-2.4191E-05	500.3077626268624	96.626	0.83404	96.469	96.255	97.089	-0.15646					40	18	3	0	0	0	0.50848	1	11948	11948		58.782	2.0609	1	476110			38475	4266	26402	26456	44030	44030					0.10184084279887884
LDVVKIGTV	9	Unmodified	_LDVVKIGTV_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF;REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.294921875	2	472.294768	942.574983	-0.3593	-0.00016969	0.99745	0.00047109	0.63815	0.0003014	472.29505103056874	40.561	1.3397	40.412	39.783	41.123	-0.1497					75	35	4	0	0	0	0.15366	2	3540	3540;3554		98.629	7.7072	1	5294900	+		38476	34863;21886	26403	26457	44031;44032	44031					0.10139815108448147
LDVVKIGTV	9	Unmodified	_LDVVKIGTV_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF;REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.29486083984375	2	472.294768	942.574983	-0.075998	-3.5893E-05	0.69201	0.00032683	0.61601	0.00029094	472.29489678216316	40.73	1.2341	40.505	40.004	41.239	-0.225					74	32	4	0	0	0	0.17845	2	3551	3529;3551		93.143	2.7734	1	4983700	+		38477	34863;21886	26403	26457	44033;44034	44034					0.10139815108448147
LDVVKIGTV	9	Unmodified	_LDVVKIGTV_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF;REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.29541015625	2	472.294768	942.574983	-1.495	-0.00070606	2.1246	0.0010034	0.62961	0.00029736	472.2956231690084	40.742	1.2276	40.512	40.046	41.274	-0.23029					76	32	4	0	0	0	0.067814	3	3541	3541;3553;3565		122.18	7.69	1	4729100	+		38478	34863;21886	26403	26457	44035;44036;44037	44035					0.10139815108448147
LDVVKIGTV	9	Unmodified	_LDVVKIGTV_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF;REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	472.294768	942.574983	-0.3593	-0.00016969	0.99745	0.00047109	0.63815	0.0003014	472.29505103056874	40.561	1.3397	40.412	39.783	41.123	-0.1497	-0.064308	-0.00028017	NaN	122.18	75	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5294900	+		38479	34863;21886	26403	26457							0.10139815108448147
LDVVKIGTV	9	Unmodified	_LDVVKIGTV_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF;REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	472.294768	942.574983	-1.495	-0.00070606	2.1246	0.0010034	0.62961	0.00029736	472.2956231690084	40.742	1.2276	40.512	40.046	41.274	-0.23029	0.035871	0.0007845	NaN	122.18	76	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4729100	+		38480	34863;21886	26403	26457							0.10139815108448147
LDVVLVRNS	9	Unmodified	_LDVVLVRNS_					0	0	0			REV__ENST00000502947.1_1_4:3317897-3344786:+|nuORF	REV__ENST00000502947.1_1_4:3317897-3344786:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.80023193359375	2	507.800749	1013.58694	-0.40153	-0.0002039	-0.65124	-0.0003307	-1.0528	-0.0005346	507.800441579446	31.14	1.3588	30.987	30.681	32.04	-0.15231					84	33	5	0	0	0	0.14024	1	2013	2013		101.6	5.4103	1	12632000	+		38481	25274	26404	26458	44038	44038					0.08069431851617992
LDVVVYKP	8	Unmodified	_LDVVVYKP_					0	0	0		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.73101806640625	2	466.776211	931.537869	-0.46686	-0.00021792	3.9481	0.0018429	3.4812	0.001625	466.7780013816533	60.084	1.53	59.835	59.211	60.741	-0.24842					43	38	2	0	0	0	0.027866	1	6725	6725		73.975	35.169	1	131640			38482	5614	26405	26459	44039	44039					0.06936143562666075
LDVVYQGVR	9	Unmodified	_LDVVYQGVR_					0	0	0			REV__ENST00000487953.1_1_1:233091430-233112053:+|nuORF	REV__ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.779541015625	2	524.792924	1047.57129	-1.6859	-0.00088477	2.762	0.0014495	1.0761	0.00056471	524.7948821626483	37.751	0.1019	37.751	37.667	37.769	0					4	2	2	0	0	0	0.024477	1	3104	3104		20.947	5.3051	1	47999	+		38483	23580	26406	26460	44040	44040					0.049411453345555856
LDWACSMAEI	10	Unmodified	_LDWACSMAEI_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.31201171875	2	569.74901	1137.48347	-0.32571	-0.00018558	0.023875	1.3603E-05	-0.30184	-0.00017197	569.7489460684426	77.153	0.38428	77.153	76.955	77.339	0					14	8	2	0	0	0	0.03519	1	9502	9502		21.96	7.095	1	569780			38484	1536	26407	26461	44041	44041					-0.07977559642722554
LDWNLLKP	8	Unmodified	_LDWNLLKP_					0	0	0		ENST00000413128.1_1_3:39685689-39685923:+|nuORF;nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	ENST00000413128.1_1_3:39685689-39685923:+|nuORF	ENST00000413128.1_1_3:39685689-39685923:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7748718261719	2	499.78711	997.559667	-0.095298	-4.7629E-05	-4.2652	-0.0021317	-4.3605	-0.0021793	499.7849439646587	50.604	0.69175	50.455	49.998	50.689	-0.14916					40	20	3	0	0	0	0.027866	1	5295	5295		31.955	1.4512	1	1722800			38485	7954	26408	26462	44042	44042					0.060789483112330345
LDWNLLKP	8	Unmodified	_LDWNLLKP_					0	0	0		ENST00000413128.1_1_3:39685689-39685923:+|nuORF;nc|ENSG00000169599|Q9UMS0-3|NFU1;ENSG00000169599|ENST00000410022|NFU1	ENST00000413128.1_1_3:39685689-39685923:+|nuORF	ENST00000413128.1_1_3:39685689-39685923:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7748718261719	2	499.78711	997.559667	-0.2878	-0.00014384	4.0625	0.0020304	3.7747	0.0018866	500.2901909922987	51.032	0.80097	50.883	50.46	51.261	-0.14916					48	22	3	0	0	0	0.027866	1	5295	5295		31.955	2.8053	1	434690			38486	7954	26408	26462	44043	44043					0.060789483112330345
LDWTYMLAAM	10	Unmodified	_LDWTYMLAAM_					0	0	0			REV__ENST00000401088.8_1_1:16693585-16693660:+|nuORF	REV__ENST00000401088.8_1_1:16693585-16693660:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	608.3406982421875	2	607.782853	1213.55115	-1.9724	-0.0011988	-1.3427	-0.00081609	-3.3151	-0.0020149	607.7818564617359	55.622	1.0243	55.72	55.148	56.173	0.098015					59	27	3	0	0	0	0.03519	1	6018	6018		21.96	0	1	420750	+		38487	31860	26409	26463	44044	44044					-0.04708109711918951
LDWVKRYYHS	10	Unmodified	_LDWVKRYYHS_					0	0	0			REV__ENSG00000138131|ENST00000260702|LOXL4	REV__ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2689208984375	3	456.234933	1365.68297	-0.85055	-0.00038805	-2.1014	-0.00095871	-2.9519	-0.0013468	456.23397123689796	27.733	0.2439	27.565	27.445	27.689	-0.16816					9	5	2	0	0	0	0.03519	1	1567	1567		30.569	0	1	81736	+		38488	23825	26410	26464	44045	44045					0.014755796917143016
LDYARVPN	8	Unmodified	_LDYARVPN_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7635803222656	2	474.250892	946.48723	0.55445	0.00026295	1.7851	0.00084659	2.3396	0.0011095	474.2515606097186	22.899	0.65413	22.701	22.457	23.111	-0.19826					24	13	2	0	0	0	0.027866	1	881	881		68.485	5.1784	1	110080			38489	2401	26411	26465	44046	44046					0.011846142376612079
LDYARVPN	8	Unmodified	_LDYARVPN_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	474.250892	946.48723	1.1633	0.00055168	-1.2684	-0.00060153	-0.1051	-4.9845E-05	474.2500485730892	23.019	0.63737	22.827	22.572	23.209	-0.19117	0.049696	-0.0025989	NaN	68.485	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68434			38490	2401	26411	26465							0.011846142376612079
LDYHKLEP	8	Unmodified	_LDYHKLEP_					0	0	0			REV__nc|ENSG00000148516|P37275-4|ZEB1	REV__nc|ENSG00000148516|P37275-4|ZEB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8226318359375	2	507.766374	1013.5182	-0.90961	-0.00046187	1.506	0.00076467	0.59634	0.0003028	507.7671031670078	60.443	0.56054	60.267	59.922	60.483	-0.1761					30	13	3	0	0	0	0.027866	1	6720	6720		40.778	3.6191	1	575800	+		38491	36771	26412	26466	44047	44047					0.011977675518892283
LDYNVVHSL	9	Unmodified	_LDYNVVHSL_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000446265.3_1:149647111-149647681:+|nuORF	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2783813476562	2	530.277106	1058.53966	-0.8715	-0.00046214	0.85095	0.00045124	-0.020547	-1.0895E-05	530.2771434763347	80.382	0.62674	80.404	80.146	80.773	0.021446					44	14	4	0	0	0	0.34489	1	9908	9908		69.628	0.8408	1	1761900			38492	8673	26413	26467	44048	44048					0.012731525806202626
LDYNYVLLL	9	Unmodified	_LDYNYVLLL_					0	0	0			REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.3129272460938	2	563.313158	1124.61176	0.58837	0.00033144	-0.89718	-0.00050539	-0.3088	-0.00017395	563.312380866116	96.815	1.3744	96.815	96.44	97.815	-3.0518E-05					85	30	4	0	0	0	0.17455	1	12283	12283		94.006	0.81096	1	749740	+		38493	29917	26414	26468	44049	44049					0.054440669343193804
LDYNYVLLL	9	Unmodified	_LDYNYVLLL_					0	0	0			REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7339477539062	2	563.313158	1124.61176	0.30296	0.00017066	-0.83486	-0.00047029	-0.5319	-0.00029963	563.3125156891224	78.541	0.47041	78.309	78.006	78.476	-0.23141					21	10	3	0	0	0	0.024487	1	9397	9397		31.955	12.595	1	111850	+		38494	29917	26414	26468	44050	44050					0.054440669343193804
LDYNYVLLL	9	Unmodified	_LDYNYVLLL_					0	0	0			REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.7337646484375	2	563.313158	1124.61176	-0.10306	-5.8054E-05	-0.22721	-0.00012799	-0.33027	-0.00018605	563.3129100980648	78.421	0.42712	78.265	78.043	78.47	-0.15591					20	9	3	0	0	0	0.024436	1	9373	9373		38.806	0	1	163300	+		38495	29917	26414	26468	44051	44051					0.054440669343193804
LDYNYVLLL	9	Unmodified	_LDYNYVLLL_					0	0	0			REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.313158	1124.61176	0.058346	3.2867E-05	-0.6483	-0.0003652	-0.58996	-0.00033233	563.31282664841	78.649	0.54092	78.457	78.216	78.757	-0.19211	0.08322	3.1032E-05	NaN	30.504	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126320	+		38496	29917	26414	26468							0.054440669343193804
LDYNYVLLL	9	Unmodified	_LDYNYVLLL_					0	0	0			REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	REV__ENST00000286175.12_1_2:201735995-201736082:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.313158	1124.61176	-0.6709	-0.00037793	-0.47599	-0.00026813	-1.1469	-0.00064606	563.3135500377356	78.496	0.70075	78.512	78.073	78.774	0.015907	0.13795	0.00022517	NaN	30.504	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103170	+		38497	29917	26414	26468							0.054440669343193804
LDYRTLLE	8	Unmodified	_LDYRTLLE_					0	0	0			REV__nc|ENSG00000154678|Q14123-2|PDE1C	REV__nc|ENSG00000154678|Q14123-2|PDE1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.30035400390625	2	511.779482	1021.54441	0.10596	5.4227E-05	-2.6551	-0.0013588	-2.5492	-0.0013046	511.77813174322284	70.97	0.63237	70.698	70.471	71.103	-0.27185					27	14	3	0	0	0	0.027866	1	8274	8274		37.159	17.162	1	439650	+		38498	24970	26415	26469	44052	44052					0.034500367233931684
LDYSQAQLW	9	Unmodified	_LDYSQAQLW_					0	0	0		ENST00000324379.9_1_1:40219137-40219350:+|nuORF	ENST00000324379.9_1_1:40219137-40219350:+|nuORF	ENST00000324379.9_1_1:40219137-40219350:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7845458984375	2	562.274564	1122.53457	-0.054114	-3.0427E-05	-2.4765	-0.0013925	-2.5306	-0.0014229	562.2720265981676	46.746	0.32024	46.477	46.341	46.662	-0.26939					9	8	2	0	0	0	0.024344	1	4488	4488		37.812	16.109	1	130470			38499	12254	26416	26470	44053	44053					-0.021791512820072967
LDYSQQQW	8	Unmodified	_LDYSQQQW_					0	0	0		ENSG00000189431|ENST00000529419|RASSF10	ENSG00000189431|ENST00000529419|RASSF10	ENSG00000189431|ENST00000529419|RASSF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2422485351562	2	534.243264	1066.47197	-0.80029	-0.00042755	1.047	0.00055935	0.24671	0.0001318	534.2435203956076	56.371	0.85045	56.146	55.771	56.621	-0.2248					39	21	3	0	0	0	0.81662	1	6072	6072		57.811	1.3775	1	5077100			38500	9813	26417	26471	44054	44054					-0.05860297350182009
LDYVSTSK	8	Unmodified	_LDYVSTSK_					0	0	0		ENSG00000088727|ENST00000684063|KIF9;ENST00000487440.5_1_3:47281337-47324087:-|nuORF	ENSG00000088727|ENST00000684063|KIF9	ENSG00000088727|ENST00000684063|KIF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.25885009765625	2	456.737283	911.460012	-0.18558	-8.476E-05	0.45964	0.00020994	0.27406	0.00012517	456.7373863497906	60.663	1.0803	60.663	60.294	61.374	0					44	28	2	0	0	0	0.027866	1	7099	7099		35.618	2.1253	1	250380			38501	1872	26418	26472	44055	44055					0.0007408590663544601
LDYYEQVD	8	Unmodified	_LDYYEQVD_					0	0	0		ENSG00000136816|ENST00000259339|TOR1B	ENSG00000136816|ENST00000259339|TOR1B	ENSG00000136816|ENST00000259339|TOR1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2896118164062	2	522.729655	1043.44476	-0.35959	-0.00018797	-2.4071	-0.0012583	-2.7667	-0.0014462	522.7281839079284	56.649	0.50635	56.747	56.51	57.016	0.097893					23	14	2	0	0	0	0.027866	1	6268	6268		26.693	0	1	135140			38502	5049	26419	26473	44056	44056					-0.07522825681212453
LEAAEALLTL	10	Unmodified	_LEAAEALLTL_					0	0	0		nc|ENSG00000269502|Q5HYR2-2|DMRTC1;ENSG00000269502|ENST00000615063|DMRTC1;ENSG00000184911|ENST00000334036|DMRTC1B	nc|ENSG00000269502|Q5HYR2-2|DMRTC1	nc|ENSG00000269502|Q5HYR2-2|DMRTC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.30419921875	2	522.30279	1042.59103	-0.82157	-0.00042911	0.73323	0.00038297	-0.088333	-4.6137E-05	522.3030669798815	82.681	0.94425	82.681	82.279	83.223	0					72	21	5	0	0	0	0.62431	1	10362	10362		74.255	0	1	2719900			38503	9381	26420	26474	44057	44057					0.0714347655466554
LEAAGRLGL	9	Unmodified	_LEAAGRLGL_					0	0	0			REV__ENST00000446119.2_1_17:60759570-60767382:+|nuORF	REV__ENST00000446119.2_1_17:60759570-60767382:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2689514160156	2	450.269084	898.523616	-0.67799	-0.00030528	0.39012	0.00017566	-0.28787	-0.00012962	450.269144272415	43.746	1.0146	43.746	43.367	44.382	0					78	28	5	0	0	0	0.25032	1	4129	4129		82.305	5.4584	1	6173800	+		38504	32624	26421	26475	44058	44058					0.07029491134358068
LEAAKKTMW	9	Unmodified	_LEAAKKTMW_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.288818359375	2	539.291702	1076.56885	-1.3477	-0.0007268	0.61343	0.00033082	-0.73427	-0.00039598	539.2918754225677	65.458	0.57505	65.207	64.986	65.561	-0.25112					25	13	3	0	0	0	0.62163	1	7469	7469		51.335	3.6781	1	1471600			38505	6477	26422	26476	44059	44059					0.033629736052489534
LEAALEHL	8	Unmodified	_LEAALEHL_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2897644042969	2	448.247818	894.481082	0.15396	6.9011E-05	0.58017	0.00026006	0.73413	0.00032907	448.24796690326093	52.801	0.48635	52.893	52.602	53.088	0.091938					28	12	3	0	0	0	0.027866	1	5612	5612		63.306	20.91	1	177900	+		38506	26240	26423	26477	44060	44060					0.029620960061379265
LEAASRLLL	9	Unmodified	_LEAASRLLL_					0	0	0			REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30657958984375	2	493.305667	984.596781	0.031035	1.531E-05	-0.50497	-0.00024911	-0.47394	-0.0002338	493.30540554648553	56.119	0.99241	56.119	55.786	56.778	0					73	27	5	0	0	0	0.11092	2	6236	6224;6236		108.09	1.6723	1	10044000	+		38507	31375	26424	26478	44061;44062	44062					0.10386619857001733
LEAASRLLL	9	Unmodified	_LEAASRLLL_					0	0	0			REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.305667	984.596781	-0.72793	-0.00035909	0.8745	0.00043139	0.14657	7.2302E-05	493.3059733372078	56.392	0.44075	56.235	55.933	56.373	-0.15656	0.065165	0.00090295	NaN	108.09	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	746590	+		38508	31375	26424	26478							0.10386619857001733
LEAASRLLL	9	Unmodified	_LEAASRLLL_					0	0	0			REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.305667	984.596781	0.29765	0.00014683	-0.41468	-0.00020457	-0.11703	-5.7733E-05	493.3054165479582	56.448	0.43237	56.232	55.958	56.39	-0.21607	0.061845	-0.00036897	NaN	108.09	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793720	+		38509	31375	26424	26478							0.10386619857001733
LEAASRLLL	9	Unmodified	_LEAASRLLL_					0	0	0			REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	REV__ENST00000377411.4_1_1:9171491-9189192:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.305667	984.596781	-0.056504	-2.7874E-05	-0.011412	-5.6295E-06	-0.067916	-3.3503E-05	493.30554788559675	56.505	0.43555	56.28	55.99	56.426	-0.2248	0.10985	2.8907E-05	NaN	108.09	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	819680	+		38510	31375	26424	26478							0.10386619857001733
LEAATVKH	8	Unmodified	_LEAATVKH_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	434.747985	867.481417	0.52299	0.00022737	-0.80614	-0.00035047	-0.28315	-0.0001231	434.7477345744295	47.376	0.73856	47.223	46.899	47.637	-0.15301					56	20	4	0	0	0	0.027866	1	4678	4678		40.573	10.069	1	1148700	+		38511	36597	26425	26479	44063	44063					0.0423751572599258
LEAATVKH	8	Unmodified	_LEAATVKH_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7796630859375	2	434.747985	867.481417	-0.33044	-0.00014366	0.63595	0.00027648	0.3055	0.00013282	434.74811329542416	47.182	0.72081	47.241	46.957	47.677	0.059097					37	20	3	0	0	0	0.027866	1	4633	4633		40.573	0	1	899760	+		38512	36597	26425	26479	44064	44064					0.0423751572599258
LEAATVKH	8	Unmodified	_LEAATVKH_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7796325683594	2	434.747985	867.481417	1.7473	0.00075964	-0.95885	-0.00041686	0.78846	0.00034278	434.74764336036947	36.34	0.30786	36.142	35.943	36.251	-0.19829					13	7	2	0	0	0	0.027866	1	2841	2841		30.504	0	1	97840	+		38513	36597	26425	26479	44065	44065					0.0423751572599258
LEACPALIL	9	Unmodified	_LEACPALIL_					0	0	0		ENST00000495880.1_1_3:52083316-52083664:-|nuORF	ENST00000495880.1_1_3:52083316-52083664:-|nuORF	ENST00000495880.1_1_3:52083316-52083664:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.76171875	2	471.770071	941.52559	-0.15091	-7.1196E-05	-0.84894	-0.0004005	-0.99985	-0.0004717	471.7686139687651	32.63	0.36808	32.642	32.45	32.818	0.011795					24	9	4	0	0	0	0.024386	1	2278	2278		33.516	1.5607	1	346230			38514	15554	26426	26480	44066	44066					0.05248783827960324
LEAELALTLK	10	Unmodified	_LEAELALTLK_					0	0	0		ENST00000595082.1_1_19:39727075-39727930:-|nuORF;ENSG00000197110|ENST00000413851|IFNL3;ENSG00000183709|ENST00000331982|IFNL2;ENSG00000182393|ENST00000333625|IFNL1	ENST00000595082.1_1_19:39727075-39727930:-|nuORF	ENST00000595082.1_1_19:39727075-39727930:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8085327148438	2	550.831714	1099.64888	-0.92617	-0.00051016	-2.8164	-0.0015514	-3.7426	-0.0020615	550.8306667214529	55.838	0.43248	55.682	55.462	55.894	-0.15656					24	11	3	0	0	0	0.03519	1	6005	6005		20.947	0	1	216960			38515	9135	26427	26481	44067	44067					0.10303738480070024
LEAELGQAR	9	Unmodified	_LEAELGQAR_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.76629638671875	2	493.766906	985.519259	-0.023009	-1.1361E-05	-0.62607	-0.00030913	-0.64908	-0.00032049	493.7668076738398	42.453	0.46735	42.479	42.323	42.79	0.026012					17	12	2	0	0	0	0.024457	1	3823	3823		21.96	0	1	128990	+		38516	20232	26428	26482	44068	44068					0.02591981920818398
LEAEQSLPD	9	Unmodified	_LEAEQSLPD_					0	0	0			REV__ENSG00000182583|ENST00000688183|VCX	REV__ENSG00000182583|ENST00000688183|VCX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3030090332031	2	501.242929	1000.47131	0.014762	7.3991E-06	0.99625	0.00049936	1.011	0.00050676	501.2434047898444	25.378	0.4994	25.206	24.95	25.449	-0.17151					33	11	4	0	0	0	0.024447	1	1197	1197		32.812	8.6097	1	380760	+		38517	27493	26429	26483	44069	44069					-0.028911367898899698
LEAEQSLPD	9	Unmodified	_LEAEQSLPD_					0	0	0			REV__ENSG00000182583|ENST00000688183|VCX	REV__ENSG00000182583|ENST00000688183|VCX	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.242929	1000.47131	-0.63664	-0.00031911	2.0998	0.0010525	1.4632	0.00073341	501.24399407950983	25.191	0.52174	25.191	24.964	25.486	0	-0.030049	0.00050951	NaN	23.523	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330000	+		38518	27493	26429	26483							-0.028911367898899698
LEAEQSLPD	9	Unmodified	_LEAEQSLPD_					0	0	0			REV__ENSG00000182583|ENST00000688183|VCX	REV__ENSG00000182583|ENST00000688183|VCX	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.242929	1000.47131	-1.0062	-0.00050436	2.3712	0.0011885	1.3649	0.00068417	501.2440860727429	25.29	0.48151	25.256	24.992	25.474	-0.034395	0.035035	0.00078154	NaN	23.523	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350320	+		38519	27493	26429	26483							-0.028911367898899698
LEAEQSLPD	9	Unmodified	_LEAEQSLPD_					0	0	0			REV__ENSG00000182583|ENST00000688183|VCX	REV__ENSG00000182583|ENST00000688183|VCX	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.242929	1000.47131	0.29919	0.00014997	0.93796	0.00047014	1.2371	0.00062011	501.2433872475984	25.126	0.68552	25.206	24.733	25.418	0.08009	-0.015279	-0.00065523	NaN	23.523	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332220	+		38520	27493	26429	26483							-0.028911367898899698
LEAEQSLPD	9	Unmodified	_LEAEQSLPD_					0	0	0			REV__ENSG00000182583|ENST00000688183|VCX	REV__ENSG00000182583|ENST00000688183|VCX	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.242929	1000.47131	-0.5351	-0.00026822	1.8767	0.0009407	1.3416	0.00067249	501.24374730334364	25.558	0.41242	25.331	25.105	25.517	-0.22683	0.10965	0.00028588	NaN	23.523	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444780	+		38521	27493	26429	26483							-0.028911367898899698
LEAETFKCV	9	Unmodified	_LEAETFKCV_					0	0	0		ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.232177734375	2	520.260068	1038.50558	-0.55946	-0.00029106	-0.51904	-0.00027004	-1.0785	-0.0005611	520.2599355892985	45.402	0.23734	45.303	45.221	45.458	-0.099449					8	6	2	0	0	0	0.024381	1	4307	4307		29.15	0	1	105270			38522	2975	26430	26484	44070	44070					-0.012130119026551256
LEAFRTIVKP	10	Unmodified	_LEAFRTIVKP_					0	0	0		nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;ENST00000490851.5_1_7:18832955-19035682:+|nuORF;ENST00000483142.5_1_7:18875588-18914218:+|nuORF	nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	587.2953491210938	2	587.353148	1172.69174	-0.80256	-0.00047139	0.23751	0.0001395	-0.56505	-0.00033189	587.3518424756976	74.266	0.38311	74.007	73.902	74.285	-0.25887					12	8	2	0	0	0	0.03519	1	9069	9069		19.104	6.2918	1	143440			38523	18046	26431	26485	44071	44071					0.11230553328186943
LEAFYLLLF	9	Unmodified	_LEAFYLLLF_					0	0	0		ENST00000508493.1_2_5:40834061-40834175:-|nuORF	ENST00000508493.1_2_5:40834061-40834175:-|nuORF	ENST00000508493.1_2_5:40834061-40834175:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7657470703125	2	564.820618	1127.62668	0.30408	0.00017175	1.2887	0.0007279	1.5928	0.00089965	564.8217666918206	76.928	0.17134	76.66	76.509	76.681	-0.26806					5	3	2	0	0	0	0.024412	1	9119	9119		50.025	9.4519	1	100030			38524	15781	26432	26486	44072	44072					0.0679755880232733
LEAGARVTSL	10	Unmodified	_LEAGARVTSL_					0	0	0			REV__ENSG00000176435|ENST00000342213|CLEC14A	REV__ENSG00000176435|ENST00000342213|CLEC14A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.8084411621094	2	508.790381	1015.56621	-0.53231	-0.00027084	-1.4149	-0.00071989	-1.9472	-0.00099072	509.29185685819084	61.514	0.20887	61.257	61.133	61.342	-0.25725					7	4	2	0	0	0	0.03519	1	6865	6865		51.193	0	1	42853	+		38525	27022	26433	26487	44073	44073					0.05904841471965483
LEAGGALHC	9	Unmodified	_LEAGGALHC_					0	0	0		nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.2876892089844	2	435.710545	869.406537	-0.1503	-6.5488E-05	2.6655	0.0011614	2.5152	0.0010959	435.7107054894173	25.948	0.80971	25.777	24.997	25.807	-0.17078					24	19	2	0	0	0	0.024323	1	1258	1258		63.306	20.832	1	78310			38526	18503	26434	26488	44074	44074					-0.03338990076895243
LEAGLPLV	8	Unmodified	_LEAGLPLV_					0	0	0			REV__ENST00000485984.1_1_1:3389348-3394597:+|nuORF	REV__ENST00000485984.1_1_1:3389348-3394597:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.2485656738281	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0017	1	11073	11073		37.028	1.8278	1	123310000	+		38527	33575	26435	26489	44075	44075					0.07228185499843676
LEAGPVLL	8	Unmodified	_LEAGPVLL_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2487487792969	2	406.249829	810.485105	0.38561	0.00015665	-3.5924	-0.0014594	-3.2068	-0.0013028	406.2482566602026	110.51	0.62167	110.39	110.14	110.76	-0.12525					30	19	2	0	0	0	1.0017	1	13564	13564		37.028	1.8278	1	171040			38528	17726	26436	26490	44076	44076					0.07228185499855044
LEAGPVLL	8	Unmodified	_LEAGPVLL_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	406.249829	810.485105	0.66615	0.00027062	-3.9251	-0.0015946	-3.259	-0.001324	406.24809689574107	110.18	0.39612	110.17	110.01	110.41	-0.009491	-0.156	-7.5955E-05	NaN	37.028	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283180			38529	17726	26436	26490							0.07228185499855044
LEAGPVLL	8	Unmodified	_LEAGPVLL_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	406.249829	810.485105	-0.60807	-0.00024703	-2.3458	-0.00095298	-2.9539	-0.0012	406.248705641444	110.58	0.53561	110.44	110.22	110.75	-0.13983	0.11861	0.0012073	NaN	37.028	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75024			38530	17726	26436	26490							0.07228185499855044
LEAGPVLL	8	Unmodified	_LEAGPVLL_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|191|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	406.249829	810.485105	0.46544	0.00018909	-3.3007	-0.0013409	-2.8352	-0.0011518	406.2484030824664	110.63	0.4808	110.48	110.21	110.69	-0.1469	0.15695	0.00043144	NaN	37.028	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51581			38531	17726	26436	26490							0.07228185499855044
LEAGRIQP	8	Unmodified	_LEAGRIQP_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.89276123046875	2	442.253434	882.492316	-0.30163	-0.0001334	1.7675	0.00078166	1.4658	0.00064826	442.2538668876084	35.156	0.58398	34.94	34.671	35.255	-0.21555					26	14	3	0	0	0	0.027866	1	2648	2648		42.474	0	1	164450	+		38532	28313	26437	26491	44077	44077					0.046369181002773985
LEAGVRLALE	10	Unmodified	_LEAGVRLALE_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-3|GLYCTK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7294311523438	2	535.813856	1069.61316	0.30726	0.00016463	-1.9293	-0.0010338	-1.6221	-0.00086913	535.8128518860769	60.034	0.81659	59.837	59.613	60.429	-0.19742					49	20	3	0	0	0	0.03519	1	6678	6678		51.193	7.0759	1	537270	+		38533	26240	26438	26492	44078	44078					0.08113701023080466
LEAKMLAQKA	10	Unmodified	_LEAKMLAQKA_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000565736.1_1_16:29814793-29815446:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.81787109375	2	551.818084	1101.62162	-0.77686	-0.00042868	0.72086	0.00039778	-0.055996	-3.09E-05	551.818390858774	52.251	0.771	52.132	51.869	52.64	-0.11876					33	19	2	0	0	0	0.52765	1	5431	5431		85.161	0.2453	1	1841300			38534	1670	26439	26493	44079	44079					0.07486931668063335
LEALKHLEV	9	Unmodified	_LEALKHLEV_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.3099365234375	2	526.310949	1050.60735	0.065113	3.427E-05	0.2547	0.00013405	0.31981	0.00016832	526.3109679978525	70.517	0.55152	70.529	70.347	70.898	0.012421					23	12	2	0	0	0	0.72875	1	8447	8447		44.117	4.864	1	735860			38535	1335	26440	26494	44080	44080					0.08406602511422534
LEALLPEAR	9	Unmodified	_LEALLPEAR_					0	0	0			REV__ENST00000429865.5_1_1:163291539-163291650:-|nuORF	REV__ENST00000429865.5_1_1:163291539-163291650:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8106384277344	2	506.295299	1010.57605	-0.31766	-0.00016083	0.63548	0.00032174	0.31782	0.00016091	506.29530298804116	45.945	0.96219	45.684	45.082	46.044	-0.26118					32	26	2	0	0	0	0.024466	1	4333	4333		31.53	6.0796	1	197700	+		38536	32345	26441	26495	44081	44081					0.07118029477328491
LEALLPEAR	9	Unmodified	_LEALLPEAR_					0	0	0			REV__ENST00000429865.5_1_1:163291539-163291650:-|nuORF	REV__ENST00000429865.5_1_1:163291539-163291650:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.295299	1010.57605	0.059948	3.0351E-05	0.47913	0.00024258	0.53908	0.00027293	506.2948463746274	45.838	0.65361	45.741	45.461	46.115	-0.096649	0.060976	-0.00016919	NaN	24.519	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120570	+		38537	32345	26441	26495							0.07118029477328491
LEALLQRA	8	Unmodified	_LEALLQRA_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6;nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF	ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000180488|Q8NAN2-2|MIGA1	ENSG00000101161|ENST00000266079|PRPF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.2195739746094	2	457.276909	912.539266	-0.40225	-0.00018394	-0.75715	-0.00034623	-1.1594	-0.00053017	457.27620613099964	40.269	0.36797	40.119	39.821	40.189	-0.1497					15	9	3	0	0	0	0.027866	1	3484	3484		25.45	1.2474	1	142510			38538	2288;8982	26442	26496	44082	44082					0.07949777651424483
LEALLTLET	9	Unmodified	_LEALLTLET_					0	0	0		ENST00000603175.1_1_2:74730887-74731265:+|nuORF	ENST00000603175.1_1_2:74730887-74731265:+|nuORF	ENST00000603175.1_1_2:74730887-74731265:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7886047363281	2	501.789515	1001.56448	0.39693	0.00019918	-0.39411	-0.00019776	0.0028252	1.4177E-06	501.7891433083652	99.616	0.60301	99.616	99.268	99.871	0					29	13	3	0	0	0	0.4752	1	12736	12736		60.972	2.19	1	558770			38539	17541	26443	26497	44083	44083					0.06375787663341725
LEALLVTP	8	Unmodified	_LEALLVTP_					0	0	0			REV__ENST00000391761.5_1_19:54598200-54598428:-|nuORF	REV__ENST00000391761.5_1_19:54598200-54598428:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2611389160156	2	428.262936	854.51132	0.10911	4.6729E-05	-2.7902	-0.0011949	-2.6811	-0.0011482	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0574	1	11503	11503		20.482	0	1	88816000	+		38540	31581	26444	26498	44084	44084					0.0782445467133357
LEALRAILHFI	11	Unmodified	_LEALRAILHFI_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	648.3922729492188	2	648.395348	1294.77614	0.47482	0.00030787	-4.4407	-0.0028794	-3.9659	-0.0025715	648.3923824203447	105.47	0.6409	105.47	105.15	105.79	-0.00049591					50	19	4	0	0	0	1.013	3	13459	13459;13466;13477		33.922	3.6039	1	1256900			38541	9764	26445	26499	44085;44086;44087	44085					0.14054504144928615
LEALRAILHFI	11	Unmodified	_LEALRAILHFI_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	648.393310546875	2	648.395348	1294.77614	-0.46644	-0.00030244	-3.4706	-0.0022503	-3.937	-0.0025528	648.3929857733464	105.5	0.73857	105.37	104.95	105.69	-0.13099					49	24	4	0	0	0	0.98218	1	13133	13133		40.778	5.6261	1	1002700			38542	9764	26445	26499	44088	44088					0.14054504144928615
LEALSLVLS	9	Unmodified	_LEALSLVLS_					0	0	0			REV__ENST00000282120.6_1_2:85547765-85547996:-|nuORF	REV__ENST00000282120.6_1_2:85547765-85547996:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7867431640625	2	472.786776	943.558998	0.74646	0.00035292	-0.61039	-0.00028858	0.13608	6.4335E-05	472.78633429082	87.336	0.94516	87.301	86.899	87.844	-0.035355					58	22	4	0	0	0	0.17455	1	10938	10938		94.006	0	1	2008300	+		38543	29894	26446	26500	44089	44089					0.08496108871520391
LEALVKLSL	9	Unmodified	_LEALVKLSL_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.76361083984375	2	493.318243	984.621933	0.3567	0.00017597	-0.21889	-0.00010798	0.13781	6.7982E-05	493.31799708166193	74.713	0.66322	74.454	74.201	74.864	-0.25887					32	15	3	0	0	0	0.024344	1	9091	9091		54.776	13.998	1	485260	+		38544	28172	26447	26501	44090	44090					0.12900674659567812
LEAMSLLLL	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))LEAM(Oxidation (M))SLLLL_		LEAM(1)SLLLL		LEAM(89)SLLLL	1	0	1			REV__ENST00000462875.1_1_6:31608876-31608906:-|nuORF	REV__ENST00000462875.1_1_6:31608876-31608906:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.8013916015625	2	530.801568	1059.58858	-0.46053	-0.00024445	0.39436	0.00020933	-0.066168	-3.5122E-05	530.8015988267713	101.21	1.3265	101.22	100.87	102.2	0.0090256					55	30	3	0	0	0	0.20304	1	12944	12944		88.643	6.3378	1	1220200	+		38545	32917	26448	26502	44091	44091		902			0.061173048253749585
LEANHRAIY	9	Unmodified	_LEANHRAIY_					0	0	0			REV__nc|ENSG00000077327|O75602-2|SPAG6	REV__nc|ENSG00000077327|O75602-2|SPAG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2675170898438	2	543.788173	1085.56179	-0.028267	-1.5371E-05	-3.9348	-0.0021397	-3.963	-0.0021551	543.7861857071566	58.784	0.32374	58.603	58.386	58.71	-0.18134					16	7	3	0	0	0	0.024405	1	6450	6450		44.117	0	1	323520	+		38546	20588	26449	26503	44092	44092					0.022433770490579263
LEAPIGFLN	9	Unmodified	_LEAPIGFLN_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.78985595703125	2	487.271293	972.528032	0.31221	0.00015213	0.032169	1.5675E-05	0.34438	0.00016781	487.2711560289374	78.667	0.90184	78.511	77.914	78.815	-0.15591					27	20	2	0	0	0	0.024477	1	9412	9412		27.882	7.4004	1	136830	+		38547	28831	26450	26504	44093	44093					0.040669555572890204
LEAPWTPPA	9	Unmodified	_LEAPWTPPA_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2455139160156	2	491.255643	980.496732	0.57963	0.00028475	0.2957	0.00014526	0.87533	0.00043001	491.2553203936104	83.155	2.5816	82.986	82.429	85.011	-0.16916					86	60	2	0	0	0	0.024487	1	10264	10264		31.955	4.0726	1	63502	+		38548	21695	26451	26505	44094	44094					0.005703825231876181
LEAQMRAE	8	Unmodified	_LEAQMRAE_					0	0	0			REV__ENSG00000149212|ENST00000536441|SESN3	REV__ENSG00000149212|ENST00000536441|SESN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.784912109375	2	474.234384	946.454216	-0.18041	-8.5556E-05	-2.3233	-0.0011018	-2.5037	-0.0011874	474.23304975741195	34.511	0.4866	34.304	34.12	34.607	-0.20696					16	11	2	0	0	0	0.027866	1	2549	2549		21.96	0	1	107590	+		38549	24660	26452	26506	44095	44095					-0.021153358766923702
LEAQPRPFRC	10	Unmodified	_LEAQPRPFRC_					0	0	0		nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646	nc|ENSG00000167395|O15015-1|ZNF646	nc|ENSG00000167395|O15015-1|ZNF646	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8171997070312	2	608.816407	1215.61826	-0.21206	-0.00012911	1.0314	0.00062794	0.81935	0.00049883	608.8169655148004	99.671	1.2822	99.681	99.268	100.55	0.010231					75	31	5	0	0	0	0.64538	1	12719	12719		71.877	2.2498	1	4620800			38550	7685	26453	26507	44096	44096					0.019076816140795927
LEAQYGFVTPK	11	Unmodified	_LEAQYGFVTPK_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;nc|ENSG00000168386|Q4L180-4|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-4|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	627.3533935546875	2	626.832246	1251.64994	-0.36201	-0.00022692	-1.1942	-0.00074855	-1.5562	-0.00097547	626.8324540763998	76.836	0.59502	76.668	76.223	76.818	-0.16854					17	13	2	0	0	0	0.024762	1	9118	9118		18.262	0	1	103110			38551	7816;18492	26454	26508	44097	44097					0.03417952849008543
LEARGAQLP	9	Unmodified	_LEARGAQLP_					0	0	0		ENST00000321599.8_2_3:49823823-49823850:-|nuORF	ENST00000321599.8_2_3:49823823-49823850:-|nuORF	ENST00000321599.8_2_3:49823823-49823850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.7591552734375	2	477.771991	953.529429	-0.74584	-0.00035634	2.5774	0.0012314	1.8316	0.00087508	477.7722900660652	38.601	0.45395	38.38	38.085	38.539	-0.22149					15	11	2	0	0	0	0.023837	1	3181	3181		74.255	0	1	105720			38552	12210	26455	26509	44098	44098					0.05080589646047429
LEARKIVAS	9	Unmodified	_LEARKIVAS_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.80291748046875	2	493.803291	985.59203	-0.41214	-0.00020352	0.17484	8.6335E-05	-0.23731	-0.00011718	493.8032768946344	51.909	1.0581	51.762	51.511	52.569	-0.14735					71	28	4	0	0	0	0.67687	1	5519	5519		47.657	10.498	1	4220400			38553	4861	26456	26510	44099	44099					0.09865735714231505
LEASTWLKN	9	Unmodified	_LEASTWLKN_					0	0	0		ENST00000462978.1_1_1:155697409-155701908:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3	ENST00000462978.1_1_1:155697409-155701908:+|nuORF	ENST00000462978.1_1_1:155697409-155701908:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.842529296875	2	531.284931	1060.55531	-1.1653	-0.0006191	0.39669	0.00021076	-0.76859	-0.00040834	531.2850210996088	51.27	0.84513	51.357	51.153	51.998	0.087006					36	23	2	0	0	0	0.024381	1	5363	5363		21.96	0	1	2791500			38554	4638	26457	26511	44100	44100					0.027454390976799914
LEAVAKFLD	9	Unmodified	_LEAVAKFLD_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF;nc|ENSG00000082153|Q7L1Q6-2|BZW1;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF;ENSG00000136261|ENST00000258761|BZW2	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27398681640625	2	503.2844	1004.55425	0.44629	0.00022461	-1.9299	-0.00097128	-1.4836	-0.00074667	503.2836607221858	91.541	0.59415	91.552	91.196	91.79	0.011276					36	13	4	0	0	0	0.024374	1	11490	11490		40.778	1.5253	1	575380			38555	1724	26458	26512	44101	44101					0.0521522472874949
LEAVNPILPE	10	Unmodified	_LEAVNPILPE_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.8087158203125	2	547.808239	1093.60193	-0.61101	-0.00033472	-0.62609	-0.00034298	-1.2371	-0.0006777	547.8076606215498	54.078	1.4579	54.078	53.691	55.149	0					127	41	7	0	0	0	0.50517	1	5900	5900		87.696	0	1	14381000			38556	7173	26459	26513	44102	44102					0.058868789289590495
LEAVSHTSDMH	11	Unmodified	_LEAVSHTSDMH_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000417455.1_1_10:44101451-44101670:-|nuORF	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.88531494140625	3	409.520522	1225.53974	-0.014361	-5.8812E-06	1.7835	0.00073038	1.7692	0.0007245	409.8546425256922	23.392	0.26	23.212	23.021	23.281	-0.17989					9	5	2	0	0	0	0.024727	1	892	892		17.833	0	1	85783			38557	4507	26460	26514	44103	44103					-0.06401215481696454
LEAVSLLVSI	10	Unmodified	_LEAVSLLVSI_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3035888671875	2	522.320983	1042.62741	0.086259	4.5055E-05	-1.1692	-0.00061068	-1.0829	-0.00056563	522.3202454708315	89.761	0.37863	89.739	89.536	89.914	-0.021645					18	8	3	0	0	0	0.03519	1	11281	11281		47.657	6.8792	1	67258	+		38558	20838	26461	26515	44104	44104					0.10780353451400515
LEAVSLLVSI	10	Unmodified	_LEAVSLLVSI_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3036499023438	2	522.320983	1042.62741	0.02722	1.4218E-05	-0.84014	-0.00043882	-0.81292	-0.00042461	522.3205829133693	89.818	0.44984	89.832	89.632	90.082	0.013443					20	10	3	0	0	0	0.03519	1	11240	11240		19.997	8.4858	1	115300	+		38559	20838	26461	26515	44105	44105					0.10780353451400515
LEAVSLLVSI	10	Unmodified	_LEAVSLLVSI_					0	0	0			REV__ENSG00000089053|ENST00000261819|ANAPC5	REV__ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.320983	1042.62741	-0.97979	-0.00051176	-0.024863	-1.2987E-05	-1.0047	-0.00052475	522.3206060940232	89.765	0.37169	89.765	89.564	89.936	0	-0.013638	0.00077675	NaN	47.657	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108470	+		38560	20838	26461	26515							0.10780353451400515
LEAWFRLL	8	Unmodified	_LEAWFRLL_					0	0	0			REV__ENSG00000197355|ENST00000409858|UAP1L1	REV__ENSG00000197355|ENST00000409858|UAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7611083984375	2	524.302927	1046.5913	-0.25904	-0.00013581	-1.9292	-0.0010115	-2.1882	-0.0011473	524.3016388483655	60.15	0.31261	59.974	59.885	60.198	-0.1761					12	7	2	0	0	0	0.027866	1	6697	6697		31.955	0	1	167270	+		38561	28294	26462	26516	44106	44106					0.06986941065179053
LEAWQQKHHCI	11	Unmodified	_LEAWQQKHHCI_					0	0	0		ENST00000262384.3_1_16:48587466-48587523:-|nuORF	ENST00000262384.3_1_16:48587466-48587523:-|nuORF	ENST00000262384.3_1_16:48587466-48587523:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	464.9007568359375	3	464.899556	1391.67684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.312	1	20.144	19.644	20.644	-0.16774								0	0	0	1.1625	1	533	533		33.039	3.7944	1				38562	11498	26463	26517	44107	44107					-0.0033326181144275324
LEAWQQKHHCI	11	Unmodified	_LEAWQQKHHCI_					0	0	0		ENST00000262384.3_1_16:48587466-48587523:-|nuORF	ENST00000262384.3_1_16:48587466-48587523:-|nuORF	ENST00000262384.3_1_16:48587466-48587523:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.9007263183594	3	464.899556	1391.67684	-0.16339	-7.5959E-05	1.9083	0.00088715	1.7449	0.00081119	464.90061226192535	20.464	1.3293	20.241	19.926	21.255	-0.22344					79	26	5	0	0	0	1.0563	1	537	537		23.378	1.5975	1	1916200			38563	11498	26463	26517	44108	44108					-0.0033326181144275324
LEAYRESLY	9	Unmodified	_LEAYRESLY_					0	0	0			REV__nc|ENSG00000188483|Q5T953-2|IER5L	REV__nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.28759765625	2	572.287671	1142.56079	0.45463	0.00026018	-0.9097	-0.00052061	-0.45506	-0.00026043	572.2871093107432	52.842	1.1955	52.584	52.249	53.444	-0.25838					107	30	5	0	0	0	0.12602	1	5524	5524		104.75	6.1646	1	12640000	+		38564	28039	26464	26518	44109	44109					-0.004788821105194074
LEAYRESLY	9	Unmodified	_LEAYRESLY_					0	0	0			REV__nc|ENSG00000188483|Q5T953-2|IER5L	REV__nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.28662109375	2	572.287671	1142.56079	-0.098481	-5.636E-05	-0.38873	-0.00022247	-0.48722	-0.00027883	572.2874021619314	52.681	1.1696	52.491	52.188	53.357	-0.18981					95	29	5	0	0	0	0.29158	1	5475	5475		76.774	7.9873	1	12582000	+		38565	28039	26464	26518	44110	44110					-0.004788821105194074
LECAAVGHPAP	11	Unmodified	_LECAAVGHPAP_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3;ENST00000433272.6_1_12:59266356-59274151:-|nuORF	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.81591796875	2	532.763309	1063.51206	-0.16752	-8.9247E-05	-3.4848	-0.0018566	-3.6524	-0.0019458	532.7608551964458	88.263	0.41429	88.126	87.901	88.315	-0.13744					16	9	3	0	0	0	0.024752	1	10736	10736		40.778	5.1599	1	133690			38566	5318	26465	26519	44111	44111					-0.017150739512771906
LECALAQPGPL	11	Unmodified	_LECALAQPGPL_					0	0	0			REV__nc|ENSG00000071994|Q16342-4|PDCD2	REV__nc|ENSG00000071994|Q16342-4|PDCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7691040039062	2	556.294442	1110.57433	-0.57903	-0.00032211	-3.657	-0.0020343	-4.236	-0.0023565	556.2923305883696	38.103	0.1299	37.924	37.809	37.939	-0.17929					6	3	2	0	0	0	0.024778	1	3112	3112		44.377	18.927	1	124390	+		38567	20458	26466	26520	44112	44112					0.02346652397068283
LECERSSL	8	Unmodified	_LECERSSL_					0	0	0		ENST00000412905.1_1_2:196521981-196544757:+|nuORF	ENST00000412905.1_1_2:196521981-196544757:+|nuORF	ENST00000412905.1_1_2:196521981-196544757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.7246398925781	2	468.726392	935.438231	0.2389	0.00011198	-3.997	-0.0018735	-3.7581	-0.0017615	468.7244389979456	46.924	0.90692	46.983	46.516	47.423	0.059093					58	24	4	0	0	0	0.59392	1	4609	4609		76.847	2.5916	1	1917600			38568	13831	26467	26521	44113	44113					-0.03207042113592706
LECFGDNCYIV	11	Unmodified	_LECFGDNCYIV_					0	0	0			REV__nc|ENSG00000055118|Q12809-4|KCNH2	REV__nc|ENSG00000055118|Q12809-4|KCNH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.26300048828125	3	425.850992	1274.53115	-0.9424	-0.00040132	-4.3482	-0.0018517	-5.2906	-0.002253	425.84907000335045	45.954	0.52695	45.802	45.647	46.174	-0.15156					23	14	2	0	0	0	0.024834	1	4527	4527		17.833	14.807	1	220740	+		38569	20199	26468	26522	44114	44114					-0.09513905442531723
LECIITCTV	9	Unmodified	_LECIITCTV_					0	0	0		ENST00000239690.8_1_8:110334554-110334668:-|nuORF	ENST00000239690.8_1_8:110334554-110334668:-|nuORF	ENST00000239690.8_1_8:110334554-110334668:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2957458496094	2	497.751021	993.48749	-0.11381	-5.6648E-05	0.10811	5.3813E-05	-0.005695	-2.8347E-06	497.7511969277488	34.554	0.77408	34.554	34.011	34.785	0					25	19	2	0	0	0	0.024354	1	2613	2613		30.504	7.4612	1	96967			38570	11275	26469	26523	44115	44115					-0.009514701490047628
LECNGAILAHY	11	Unmodified	_LECNGAILAHY_					0	0	0		ENST00000523752.5_1_8:22879516-22879924:-|nuORF	ENST00000523752.5_1_8:22879516-22879924:-|nuORF	ENST00000523752.5_1_8:22879516-22879924:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.86572265625	3	401.865741	1202.57539	0.14633	5.8806E-05	-0.21362	-8.5846E-05	-0.067284	-2.7039E-05	401.86551409063514	44.202	2.5432	43.958	43.556	46.099	-0.2444					127	68	3	0	0	0	1.0281	1	4085	4085		30.569	3.8192	1	3328300			38571	16049	26470	26524	44116	44116					-0.017791332340038934
LECREPLLIP	10	Unmodified	_LECREPLLIP_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;ENST00000503939.5_1_5:14741448-14751330:-|nuORF	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	592.7880249023438	2	591.831191	1181.64783	-0.75874	-0.00044905	-1.1457	-0.00067808	-1.9045	-0.0011271	591.8300288861439	52.382	0.1604	52.198	52.072	52.233	-0.18405					5	3	2	0	0	0	0.03519	1	5424	5424		35.618	0	1	37137			38572	6383	26471	26525	44117	44117					0.06427200839539182
LECREPLLIP	10	Unmodified	_LECREPLLIP_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;ENST00000503939.5_1_5:14741448-14751330:-|nuORF	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	591.831191	1181.64783	-1.2879	-0.00076223	0.94425	0.00055883	-0.34368	-0.0002034	591.831537955125	51.853	0.13535	51.853	51.736	51.871	0	-0.1728	0.00027228	NaN	27.882	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54349			38573	6383	26471	26525							0.06427200839539182
LECRLEKVL	9	Unmodified	_LECRLEKVL_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.8178100585938	2	551.818084	1101.62162	0.019081	1.0529E-05	-0.78504	-0.0004332	-0.76596	-0.00042267	551.8175087803618	41.391	3.0147	41.391	39.988	43.002	0					194	85	3	0	0	0	0.39228	1	3773	3773		66.429	13.078	1	4031600	+		38574	25545	26472	26526	44118	44118					0.07486931668063335
LEDALARAH	9	Unmodified	_LEDALARAH_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5;ENST00000432916.5_1_22:45122508-45132738:+|nuORF	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.3343811035156	2	498.267073	994.519593	0.096255	4.7961E-05	3.9623	0.0019743	4.0585	0.0020222	498.26869620004993	74.957	0.57332	74.698	74.409	74.983	-0.25887					30	13	3	0	0	0	0.024294	1	9113	9113		37.159	2.9866	1	412470			38575	9569	26473	26527	44119	44119					0.022114016406476367
LEDDLIITQ	9	Unmodified	_LEDDLIITQ_					0	0	0			REV__nc|ENSG00000126561|P42229-2|STAT5A;REV__ENSG00000173757|ENST00000293328|STAT5B	REV__nc|ENSG00000126561|P42229-2|STAT5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.323486328125	2	530.282054	1058.54956	1.6997	0.00090129	-0.99282	-0.00052648	0.70683	0.00037482	530.2815275754295	36.595	0.68339	36.397	36.093	36.776	-0.19829					22	16	2	0	0	0	0.024205	1	2873	2873		53.351	22.848	1	321890	+		38576	22902;26804	26474	26528	44120	44120					0.02262295795344471
LEDEKKKRA	9	Unmodified	_LEDEKKKRA_					0	0	0			REV__nc|ENSG00000153774|Q9UEE9-2|CFDP1	REV__nc|ENSG00000153774|Q9UEE9-2|CFDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.303466796875	2	558.822212	1115.62987	-0.075134	-4.1986E-05	-3.7974	-0.0021221	-3.8725	-0.002164	558.8198916204286	47.132	1.3596	46.979	46.342	47.702	-0.15301					68	37	3	0	0	0	0.024541	1	4588	4588		20.947	2.6225	1	670680	+		38577	24909	26475	26529	44121	44121					0.07668201909041272
LEDEKKKRA	9	Unmodified	_LEDEKKKRA_					0	0	0			REV__nc|ENSG00000153774|Q9UEE9-2|CFDP1	REV__nc|ENSG00000153774|Q9UEE9-2|CFDP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.822212	1115.62987	0.0096184	5.375E-06	-3.9262	-0.0021941	-3.9166	-0.0021887	558.8198354782024	46.947	1.1418	46.947	46.48	47.622	0	-0.019525	-0.00015064	NaN	20.947	61	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985750	+		38578	24909	26475	26529							0.07668201909041272
LEDFVPQKV	9	Unmodified	_LEDFVPQKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.305419921875	2	537.795132	1073.57571	-0.77425	-0.00041639	-1.7055	-0.00091722	-2.4798	-0.0013336	537.7932751384433	68.796	0.21868	68.796	68.68	68.898	0					10	5	2	0	0	0	0.024374	1	8270	8270		40.778	6.6056	1	167190			38579	6055	26476	26530	44122	44122					0.0418660975747116
LEDGTPKII	9	Unmodified	_LEDGTPKII_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2626037597656	2	493.281857	984.549162	0.072333	3.568E-05	0.058353	2.8784E-05	0.13069	6.4465E-05	493.2816551507724	71.191	1.0766	70.934	70.607	71.684	-0.25713					51	25	3	0	0	0	0.023635	1	8348	8348		76.774	0	1	2067100			38580	8174	26477	26531	44123	44123					0.056269208661547054
LEDIIIEVK	9	Unmodified	_LEDIIIEVK_					0	0	0			REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.80859375	2	536.31844	1070.62233	-0.72709	-0.00038995	-3.868	-0.0020745	-4.5951	-0.0024644	536.3161395810287	85.637	1.2089	85.58	84.898	86.107	-0.057617					50	28	2	0	0	0	0.023007	1	10632	10632		66.429	0	1	134040	+		38581	36940	26478	26532	44124	44124					0.08984049588752896
LEDIYTENV	9	Unmodified	_LEDIYTENV_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.7957763671875	2	548.263862	1094.51317	-1.2122	-0.00066458	1.6363	0.0008971	0.4241	0.00023252	548.2646242223225	53.942	0.55313	53.806	53.598	54.151	-0.13616					25	17	2	0	0	0	0.024477	1	5699	5699		20.947	0	1	257420			38582	7659	26479	26533	44125	44125					-0.030305811013704442
LEDKAAEGAPG	11	Unmodified	_LEDKAAEGAPG_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.75927734375	2	529.261653	1056.50875	0.26649	0.00014104	2.3043	0.0012196	2.5708	0.0013606	529.2628736299371	100.26	0.44234	100.25	100.14	100.58	-0.0050812					13	10	2	0	0	0	0.024762	1	12755	12755		18.262	0	1	133540			38583	10357	26480	26534	44126	44126					-0.017240455242927055
LEDKEINKKR	10	Unmodified	_LEDKEINKKR_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7755432128906	3	424.91386	1271.71975	0.1397	5.936E-05	3.9312	0.0016704	4.0709	0.0017298	424.9152034923394	42.892	0.26859	42.78	42.693	42.962	-0.11253					8	6	2	0	0	0	0.03519	1	3919	3919		30.569	10.942	1	57169			38584	3152	26481	26535	44127	44127					0.09475831517602273
LEDKEINKKR	10	Unmodified	_LEDKEINKKR_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	424.91386	1271.71975	-0.06036	-2.5648E-05	4.9837	0.0021176	4.9233	0.002092	424.9150336333565	43.114	0.19361	42.876	42.759	42.953	-0.23737	0.048222	0.00086107	NaN	30.569	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33558			38585	3152	26481	26535							0.09475831517602273
LEDKNLESIL	10	Unmodified	_LEDKNLESIL_					0	0	0		nc|ENSG00000177752|Q8N8F6-4|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	587.2952880859375	2	587.321711	1172.62887	0.046652	2.74E-05	-2.8696	-0.0016854	-2.823	-0.001658	587.3205810947995	74.055	0.38684	74.055	73.828	74.215	0					19	8	3	0	0	0	0.03519	1	9076	9076		24.519	3.5723	1	231620			38586	18546	26482	26536	44128	44128					0.04945942749486676
LEDKNVIL	8	Unmodified	_LEDKNVIL_					0	0	0			REV__ENST00000414406.2_1_12:20094688-20094799:+|nuORF	REV__ENST00000414406.2_1_12:20094688-20094799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7666931152344	2	472.276575	942.538597	0.60492	0.00028569	-1.1752	-0.00055504	-0.57033	-0.00026935	472.275888322068	71.432	0.75005	71.443	71.239	71.989	0.010735					28	19	2	0	0	0	0.027866	1	8553	8553		35.201	0	1	1134900	+		38587	32036	26483	26537	44129	44129					0.06502938211713172
LEDLACPNPE	10	Unmodified	_LEDLACPNPE_					0	0	0		ENST00000403205.6_1_3:40566492-40567310:+|nuORF	ENST00000403205.6_1_3:40566492-40567310:+|nuORF	ENST00000403205.6_1_3:40566492-40567310:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.7740478515625	2	550.750064	1099.48558	-0.61685	-0.00033973	-0.14773	-8.1362E-05	-0.76458	-0.00042109	550.7505322821298	54.815	0.1412	54.913	54.807	54.949	0.098015					5	3	2	0	0	0	0.03519	1	5935	5935		25.574	0	1	66451			38588	13695	26484	26538	44130	44130					-0.060188076332678975
LEDLKFVL	8	Unmodified	_LEDLKFVL_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7870788574219	2	488.789318	975.564084	0.039316	1.9217E-05	-0.80584	-0.00039389	-0.76652	-0.00037467	488.78909602814883	106.25	0.41726	106.24	106.09	106.51	-0.0013123					16	12	2	0	0	0	0.77775	1	13597	13597		60.972	7.6205	1	271100			38589	18641	26485	26539	44131	44131					0.075324127341446
LEDLLLKV	8	Unmodified	_LEDLLLKV_					0	0	0		ENSG00000187288|ENST00000336832|CIDEC	ENSG00000187288|ENST00000336832|CIDEC	ENSG00000187288|ENST00000336832|CIDEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7972412109375	2	471.797143	941.579734	1.3618	0.00064251	-1.1726	-0.00055324	0.18921	8.9268E-05	471.79645351507503	85.681	1.1449	85.681	85.372	86.517	0					52	26	3	0	0	0	0.94517	1	10758	10758		45.952	0	1	924840			38590	9621	26486	26540	44132	44132					0.10660699251184269
LEDLQYDLF	9	Unmodified	_LEDLQYDLF_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.3056030273438	2	578.282054	1154.54956	-1.7255	-0.00099784	-1.9149	-0.0011074	-3.6404	-0.0021052	578.2806955489802	75.864	0.41031	75.864	75.622	76.032	0					17	10	3	0	0	0	0.024427	1	9310	9310		26.693	0	1	200100	+		38591	21663	26487	26541	44133	44133					-0.02153704204670248
LEDNERWN	8	Unmodified	_LEDNERWN_					0	0	0		ENST00000590884.5_1_18:43447592-43462392:-|nuORF	ENST00000590884.5_1_18:43447592-43462392:-|nuORF	ENST00000590884.5_1_18:43447592-43462392:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2431030273438	2	538.243795	1074.47304	0.11217	6.0375E-05	0.58689	0.00031589	0.69906	0.00037627	538.2448553985078	55.662	1.4268	55.662	55.319	56.745	0					91	39	6	0	0	0	0.47665	1	6142	6142		87.754	5.5138	1	12697000			38592	17341	26488	26542	44134	44134					-0.06122082981278254
LEDPSQLPP	9	Unmodified	_LEDPSQLPP_					0	0	0		ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000466995.5_1_X:48751014-48751375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2591247558594	2	498.25584	994.497126	-0.75543	-0.00037639	2.3737	0.0011827	1.6182	0.0008063	498.2570412287507	75.549	0.76204	75.549	75.232	75.994	0					64	20	4	0	0	0	0.35646	1	9266	9266		68.787	5.4806	1	1885400			38593	4212;14825	26489	26543	44135	44135					-0.0003424254761057455
LEDPSQLPP	9	Unmodified	_LEDPSQLPP_					0	0	0		ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B;nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENST00000466995.5_1_X:48751014-48751375:-|nuORF	ENST00000466995.5_1_X:48751014-48751375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.25836181640625	2	498.25584	994.497126	-0.44506	-0.00022175	2.0607	0.0010268	1.6157	0.00080502	498.25698694595764	75.744	0.95436	75.499	75.229	76.183	-0.24455					67	25	4	0	0	0	0.48817	1	9270	9270		60.118	3.3972	1	2644100			38594	4212;14825	26489	26543	44136	44136					-0.0003424254761057455
LEDQDWLD	8	Unmodified	_LEDQDWLD_					0	0	0		UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant;ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	UBE4A|p.P552Lfs*14|1|0.08|ENSG00000110344|chr11:118379528-118379529|-/TT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2982177734375	2	517.227279	1032.44001	-1.5509	-0.00080216	-2.5948	-0.0013421	-4.1457	-0.0021443	517.2258748542414	38.952	0.69716	38.976	38.688	39.385	0.023727					29	18	2	0	0	0	0.027866	1	3236	3236		20.947	0	1	630120			38595	3037	26490	26544	44137	44137					-0.07491709823989368
LEDQIIQLN	9	Unmodified	_LEDQIIQLN_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7763671875	2	543.295496	1084.57644	-0.71627	-0.00038915	1.0303	0.00055975	0.31401	0.0001706	543.2958365641011	67.655	0.52408	67.367	67.069	67.593	-0.28834					27	12	3	0	0	0	0.016258	1	8077	8077		116.9	26.534	1	463120	+		38596	24990	26491	26545	44138	44138					0.03753404406552363
LEDQIVQLQ	9	Unmodified	_LEDQIVQLQ_					0	0	0		nc|ENSG00000147127|Q5JT25-2|RAB41;ENSG00000147127|ENST00000374473|RAB41	nc|ENSG00000147127|Q5JT25-2|RAB41	nc|ENSG00000147127|Q5JT25-2|RAB41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3370361328125	2	543.295496	1084.57644	-0.98924	-0.00053745	-4.2511	-0.0023096	-5.2403	-0.002847	543.7954218494255	48.637	0.4514	48.637	48.378	48.83	0					20	12	2	0	0	0	0.022411	1	4949	4949		101.6	0	1	329370			38597	5935	26492	26546	44139	44139					0.03753404406529626
LEDSGDSC	8	Unmodified	_LEDSGDSC_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2;REV__ENSG00000147852|ENST00000382100|VLDLR	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.1512451171875	2	413.150183	824.285813	-0.25936	-0.00010715	2.4003	0.00099169	2.1409	0.00088453	413.15106901202313	81.483	0.72929	81.352	81.015	81.744	-0.13075					38	17	3	0	0	0	0.93274	1	10117	10117		47.916	7.343	1	577440	+		38598	20681;24583	26493	26547	44140	44140					-0.13335862581004676
LEDSGRWGH	9	Unmodified	_LEDSGRWGH_					0	0	0			REV__ENST00000343327.6_1_9:115030452-115095785:-|nuORF	REV__ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2744140625	2	528.746505	1055.47846	-0.88147	-0.00046607	1.3196	0.00069772	0.43811	0.00023165	528.7465080470689	47.445	0.65196	47.504	47.179	47.831	0.059097					58	19	4	0	0	0	0.024405	1	4682	4682		44.117	8.4985	1	1482600	+		38599	30665	26494	26548	44141	44141					-0.04706359398801396
LEDTTARFT	9	Unmodified	_LEDTTARFT_					0	0	0		ENSG00000078403|ENST00000307729|MLLT10;nc|ENSG00000078403|P55197-1|MLLT10;ENST00000468309.1_1_10:21957921-21959695:+|nuORF	ENSG00000078403|ENST00000307729|MLLT10	ENSG00000078403|ENST00000307729|MLLT10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.2640991210938	2	527.264196	1052.51384	-0.28369	-0.00014958	-0.56066	-0.00029562	-0.84435	-0.0004452	527.264036091411	48.152	1.4087	48.219	47.936	49.345	0.066795					69	38	3	0	0	0	0.31247	1	4849	4849		73.975	2.0973	1	5130200			38600	1636	26495	26549	44142	44142					-0.01031741661677188
LEDVFLLW	8	Unmodified	_LEDVFLLW_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7994384765625	2	517.781493	1033.54843	0.47902	0.00024803	-3.7592	-0.0019465	-3.2802	-0.0016984	517.7799539202023	104.62	0.63858	104.46	104.08	104.72	-0.16484					37	17	4	0	0	0	0.027866	1	13002	13002		28.254	0	1	187110			38601	874	26496	26550	44143	44143					0.03300126217095567
LEDVVEGL	8	Unmodified	_LEDVVEGL_					0	0	0			REV__SYNE1|p.A4729V|1|0.25|ENSG00000131018|chr6:152330499-152330499|G/A|missense_variant	REV__SYNE1|p.A4729V|1|0.25|ENSG00000131018|chr6:152330499-152330499|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7638244628906	2	437.231833	872.449113	0.10307	4.5063E-05	4.0944	0.0017902	4.1974	0.0018353	437.2336265224193	27.251	0.58904	27.094	26.802	27.391	-0.15664					17	13	2	0	0	0	0.027866	1	1426	1426		50.025	7.5501	1	73978	+		38602	37665	26497	26551	44144	44144					0.00778683532348623
LEDWLEKRA	9	Unmodified	_LEDWLEKRA_					0	0	0		ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	580.3092651367188	2	580.308938	1158.60332	-0.61482	-0.00035679	0.46248	0.00026838	-0.15233	-8.8401E-05	580.3092329758972	64.293	1.1368	64.293	63.954	65.091	0					79	30	4	0	0	0	0.31037	1	7591	7591		74.255	3.4388	1	5739300			38603	2179	26498	26552	44145	44145					0.030365130177187893
LEDWLEKRA	9	Unmodified	_LEDWLEKRA_					0	0	0		ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	580.3101806640625	2	580.308938	1158.60332	-1.2379	-0.00071834	1.3517	0.00078439	0.11382	6.6051E-05	580.3097909076911	64.575	0.93478	64.313	63.976	64.911	-0.2626					64	24	4	0	0	0	0.17822	1	7605	7605		93.195	8.2799	1	4432400			38604	2179	26498	26552	44146	44146					0.030365130177187893
LEDWLEKRA	9	Unmodified	_LEDWLEKRA_					0	0	0		ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	580.309326171875	2	580.308938	1158.60332	0.45112	0.00026179	-0.67886	-0.00039395	-0.22774	-0.00013216	580.3086080276304	64.328	1.1134	64.374	64.081	65.195	0.045502					86	29	5	0	0	0	0.16468	2	7514	7503;7514		96.19	17.927	1	4664000			38605	2179	26498	26552	44147;44148	44148					0.030365130177187893
LEEAGRRR	8	Unmodified	_LEEAGRRR_					0	0	0		ENST00000550566.6_1_12:112846929-112847196:-|nuORF	ENST00000550566.6_1_12:112846929-112847196:-|nuORF	ENST00000550566.6_1_12:112846929-112847196:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3059997558594	2	493.778139	985.541725	-0.043609	-2.1533E-05	3.118	0.0015396	3.0744	0.0015181	493.7792271079098	68.714	0.64466	68.714	68.332	68.977	0					22	16	2	0	0	0	0.027866	1	8292	8292		35.201	1.6851	1	236550			38606	16587	26499	26553	44149	44149					0.048376261090993466
LEEAKVLLEKA	11	Unmodified	_LEEAKVLLEKA_					0	0	0		ENST00000438592.2_1_10:86215703-86215805:-|nuORF	ENST00000438592.2_1_10:86215703-86215805:-|nuORF	ENST00000438592.2_1_10:86215703-86215805:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.8985595703125	3	414.914978	1241.7231	-0.5717	-0.00023721	1.4256	0.00059149	0.85387	0.00035429	415.24915449794577	25.215	0.60797	25.181	24.948	25.556	-0.034395					19	14	2	0	0	0	0.02476	1	1159	1159		53.597	3.5634	1	36871			38607	14314	26500	26554	44150	44150					0.11191081571610084
LEEARSEAGP	10	Unmodified	_LEEARSEAGP_					0	0	0		ENST00000389811.8_1_2:111490161-111525952:+|nuORF	ENST00000389811.8_1_2:111490161-111525952:+|nuORF	ENST00000389811.8_1_2:111490161-111525952:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.81591796875	2	529.759278	1057.504	0.086923	4.6048E-05	-4.2327	-0.0022423	-4.1458	-0.0021963	529.7568451271112	71.911	1.3145	71.705	71.007	72.322	-0.20613					60	31	3	0	0	0	0.03519	1	8311	8311		23.523	6.1577	1	369740			38608	13381	26501	26555	44151	44151					-0.022449296670401964
LEEDGESDTE	10	Unmodified	_LEEDGESDTE_					0	0	0		nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	nc|ENSG00000113448|Q08499-6|PDE4D	nc|ENSG00000113448|Q08499-6|PDE4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2688598632812	2	562.217305	1122.42006	0.2432	0.00013673	-0.41976	-0.000236	-0.17656	-9.9264E-05	562.2160594758325	79.745	0.37366	79.525	79.327	79.701	-0.21923					18	8	3	0	0	0	0.03519	1	9531	9531		21.96	6.3181	1	120760			38609	18183	26502	26556	44152	44152					-0.1362555034527304
LEEELEEAV	9	Unmodified	_LEEELEEAV_					0	0	0		ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	ENSG00000140691|ENST00000268314|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3004150390625	2	530.755869	1059.49719	-1.2501	-0.00066348	3.1924	0.0016944	1.9423	0.0010309	530.7572092348648	38.241	0.78167	38.02	37.797	38.579	-0.22148					51	21	3	0	0	0	0.024412	1	3225	3225		17.365	0	1	1372000			38610	5437	26503	26557	44153	44153					-0.03018287338272785
LEEELEEAV	9	Unmodified	_LEEELEEAV_					0	0	0		ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	ENSG00000140691|ENST00000268314|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.755869	1059.49719	-1.8517	-0.00098278	1.4306	0.00075932	-0.42102	-0.00022346	530.7567423179553	38.124	0.74574	38.124	37.769	38.515	0	0.089072	-0.00099363	NaN	11.511	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569110			38611	5437	26503	26557							-0.03018287338272785
LEEELEEAV	9	Unmodified	_LEEELEEAV_					0	0	0		ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	ENSG00000140691|ENST00000268314|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.755869	1059.49719	-1.3572	-0.00072033	1.0918	0.00057946	-0.26542	-0.00014087	530.7564990648451	38.022	0.77799	37.94	37.636	38.414	-0.082516	-0.095352	-0.0013534	NaN	11.511	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507630			38612	5437	26503	26557							-0.03018287338272785
LEEESPIIN	9	Unmodified	_LEEESPIIN_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3267211914062	2	522.266404	1042.51826	-0.84205	-0.00043977	1.9292	0.0010076	1.0872	0.00056779	522.2670249706345	55.092	0.70643	55.19	54.626	55.332	0.098015					33	19	3	0	0	0	0.024405	1	5993	5993		27.882	0	1	416420			38613	952	26504	26558	44154	44154					-0.0013027723873619834
LEEFLDKND	9	Unmodified	_LEEFLDKND_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.3138427734375	2	561.769311	1121.52407	-0.34346	-0.00019294	0.68079	0.00038245	0.33734	0.00018951	561.769524344599	70.613	0.85358	70.625	70.272	71.126	0.012413					37	20	2	0	0	0	0.02435	1	8466	8466		26.693	0	1	454700			38614	3949	26505	26559	44155	44155					-0.03183178727090308
LEEFRLAQP	9	Unmodified	_LEEFRLAQP_					0	0	0			REV__nc|ENSG00000163374|Q9H869-6|YY1AP1	REV__nc|ENSG00000163374|Q9H869-6|YY1AP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2816162109375	2	551.798206	1101.58186	-0.8753	-0.00048299	2.0574	0.0011352	1.1821	0.00065226	551.7982306308692	62.251	0.61232	62.073	61.691	62.304	-0.17781					31	15	4	0	0	0	0.024523	1	6952	6952		21.96	9.753	1	596930	+		38615	25559	26506	26560	44156	44156					0.03513127989003806
LEEFRTSLPK	10	Unmodified	_LEEFRTSLPK_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.5877380371094	3	407.227556	1218.66084	-0.036242	-1.4759E-05	-3.8486	-0.0015673	-3.8849	-0.001582	407.5590824588915	25.491	0.58661	25.32	24.993	25.579	-0.17151					23	13	3	0	0	0	0.03519	1	1155	1155		48.602	14.68	1	49047			38616	10612	26507	26561	44157	44157					0.06025355223300721
LEEFTSQYSR	10	Unmodified	_LEEFTSQYSR_					0	0	0		ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.2405700683594	3	420.534937	1258.58298	-0.34339	-0.00014441	-1.897	-0.00079775	-2.2404	-0.00094216	420.5332064988392	37.494	0.31998	37.285	37.114	37.434	-0.2092					15	7	3	0	0	0	0.03519	1	3017	3017		13.508	0	1	75922			38617	4859	26508	26562	44158	44158					-0.03596702432787424
LEEGAFVLAD	10	Unmodified	_LEEGAFVLAD_					0	0	0		ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	ENSG00000117114|ENST00000686636|ADGRL2	ENSG00000117114|ENST00000686636|ADGRL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8078002929688	2	532.268947	1062.52334	-0.19263	-0.00010253	1.2463	0.00066334	1.0536	0.00056081	532.7719094075692	47.472	0.54068	47.319	47.161	47.702	-0.15301					18	15	2	0	0	0	0.03519	1	4790	4790		47.657	0	1	149790			38618	3607	26509	26563	44159	44159					-0.005419733761300449
LEEGPQVDRLA	11	Unmodified	_LEEGPQVDRLA_					0	0	0			REV__ENSG00000112238|ENST00000369215|PRDM13	REV__ENSG00000112238|ENST00000369215|PRDM13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5497131347656	3	409.550698	1225.63027	0.85681	0.00035091	-2.9137	-0.0011933	-2.0569	-0.00084239	409.54949090781156	52.989	2.3405	53.085	52.606	54.946	0.095669					131	65	4	0	0	0	1.0013	1	5608	5608		36.528	0.21026	1	9425400	+		38619	21983	26510	26564	44160	44160					0.026475768382624665
LEEHPLLL	8	Unmodified	_LEEHPLLL_					0	0	0			REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.761474609375	2	482.279118	962.543683	0.53393	0.0002575	-1.8097	-0.00087278	-1.2758	-0.00061528	482.2782784068373	78.072	0.2113	77.83	77.698	77.909	-0.24232					6	4	2	0	0	0	0.027866	1	9299	9299		14.664	0	1	22848	+		38620	30542	26511	26565	44161	44161					0.06091242074330694
LEEHREKV	8	Unmodified	_LEEHREKV_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-5|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3052978515625	2	520.28018	1038.54581	-0.33335	-0.00017344	-3.007	-0.0015645	-3.3404	-0.0017379	520.2784965777041	93.624	0.17293	93.624	93.515	93.687	0					5	3	2	0	0	0	0.027866	1	11884	11884		71.296	0	1	110800			38621	3066	26512	26566	44162	44162					0.028076708121261618
LEEHTGALVT	10	Unmodified	_LEEHTGALVT_					0	0	0			REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2471313476562	2	535.279846	1068.54514	-0.36467	-0.0001952	0.33162	0.00017751	-0.033044	-1.7688E-05	535.2819285586033	73.708	0.27386	73.431	73.288	73.562	-0.2769					8	6	2	0	0	0	0.03519	1	8661	8661		60.972	11.53	1	64768	+		38622	37058	26513	26567	44163	44163					0.013608313724489562
LEEIEQLR	8	Unmodified	_LEEIEQLR_					0	0	0			REV__SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	REV__SRPK2|p.S486Ffs*3|1|0.2|ENSG00000135250|chr7:105142061-105142062|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3115844726562	2	515.282389	1028.55022	0.31215	0.00016084	2.484	0.0012799	2.7961	0.0014408	515.2836186721569	20.172	0.33821	19.949	19.878	20.216	-0.22344					10	6	2	0	0	0	0.027866	1	496	496		87.754	10.98	1	31970	+		38623	23524	26514	26568	44164	44164					0.03709135235044414
LEEITGKFN	9	Unmodified	_LEEITGKFN_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7953491210938	2	525.776939	1049.53933	-0.38207	-0.00020088	-1.6052	-0.00084396	-1.9872	-0.0010448	525.7758880421733	52.111	0.24214	52.203	52.079	52.321	0.091938					10	5	2	0	0	0	0.024477	1	5480	5480		27.882	0	1	133880	+		38624	23231	26515	26569	44165	44165					0.01653732860791024
LEEITKYYAS	10	Unmodified	_LEEITKYYAS_					0	0	0			REV__CON__P08730-1	REV__CON__P08730-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.248779296875	3	406.20805	1215.60232	0.98744	0.0004011	-3.0504	-0.0012391	-2.063	-0.00083799	406.20685524439483	87.855	0.26797	87.819	87.693	87.961	-0.035355					11	6	3	0	0	0	0.03519	1	11049	11049		14.694	5.4819	1	137070	+	+	38625	19546	26516	26570	44166	44166					0.0031425385814145557
LEEKILALE	9	Unmodified	_LEEKILALE_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3097534179688	2	529.310615	1056.60668	-0.29131	-0.0001542	-2.1439	-0.0011348	-2.4352	-0.001289	529.3095205123531	29.03	0.78307	29.109	28.824	29.607	0.078344					43	19	4	0	0	0	0.92825	1	1705	1705		30.504	0	1	2626500			38626	8357	26517	26571	44167	44167					0.08063763071731955
LEEKKKFD	8	Unmodified	_LEEKKKFD_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.7792358398438	2	518.787307	1035.56006	0.91088	0.00047255	-0.91388	-0.00047411	-0.0029978	-1.5552E-06	518.7868503962277	85.554	0.98141	85.404	85.114	86.095	-0.14967					49	21	3	0	0	0	0.027866	1	10471	10471		29.15	10.825	1	351170	+		38627	24520	26518	26572	44168	44168					0.043703232404368464
LEEKRKMN	8	Unmodified	_LEEKRKMN_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.8212280273438	2	524.284408	1046.55426	-0.92417	-0.00048453	-2.5658	-0.0013452	-3.4899	-0.0018297	524.2831097320797	48.737	0.53775	48.457	48.218	48.756	-0.27977					34	14	3	0	0	0	0.027866	1	4849	4849		96.19	50.238	1	1705400	+		38628	27243	26519	26573	44169	44169					0.03284901457118394
LEEKRKMN	8	Unmodified	_LEEKRKMN_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.8209228515625	2	524.284408	1046.55426	-0.93732	-0.00049142	-3.0506	-0.0015994	-3.9879	-0.0020908	524.2828196370776	48.374	0.3704	48.098	47.851	48.222	-0.27598					12	9	2	0	0	0	0.027866	1	4786	4786		68.787	26.391	1	739820	+		38629	27243	26519	26573	44170	44170					0.03284901457118394
LEELGLEPE	9	Unmodified	_LEELGLEPE_					0	0	0			REV__nc|ENSG00000133265|Q9NZL4-2|HSPBP1	REV__nc|ENSG00000133265|Q9NZL4-2|HSPBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2843017578125	2	514.760955	1027.50736	1.5758	0.00081115	-1.132	-0.0005827	0.44381	0.00022845	514.7605195676401	82.563	0.72648	82.453	82.126	82.853	-0.11006					24	16	2	0	0	0	0.023417	1	10270	10270		79.451	37.055	1	60786	+		38630	23366	26520	26574	44171	44171					-0.005296796130551229
LEELGLLI	8	Unmodified	_LEELGLLI_					0	0	0			REV__ENST00000273859.7_1_4:47593407-47593530:+|nuORF	REV__ENST00000273859.7_1_4:47593407-47593530:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2744140625	2	450.276044	898.537535	-1.3767	-0.00061991	-2.6245	-0.0011817	-4.0012	-0.0018017	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0572	1	11453	11453		28.254	2.8041	1	56225000	+		38631	29825	26521	26575	44172	44172					0.08420723842812095
LEELIVAL	8	Unmodified	_LEELIVAL_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2742919921875	2	450.276044	898.537535	-1.3767	-0.00061991	-2.6245	-0.0011817	-4.0012	-0.0018017	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0572	1	11440	11440		28.254	3.7503	1	56225000	+		38632	20224	26522	26576	44173	44173					0.08420723842812095
LEELLLQERH	10	Unmodified	_LEELLLQERH_					0	0	0			REV__ENSG00000173442|ENST00000309295|EHBP1L1	REV__ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.26458740234375	3	427.238343	1278.6932	-0.0042541	-1.8175E-06	0.68818	0.00029402	0.68393	0.0002922	427.23912854265086	54.103	0.41098	53.955	53.821	54.232	-0.14723					23	11	3	0	0	0	0.03519	1	5846	5846		20.03	0	1	257310	+		38633	26773	26523	26577	44174	44174					0.06500142626282468
LEELQNLN	8	Unmodified	_LEELQNLN_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14;nc|ENSG00000106443|O94880-2|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.28094482421875	2	486.753464	971.492375	0.65651	0.00031956	-0.22381	-0.00010894	0.4327	0.00021062	486.75330630118935	70.207	0.48666	69.914	69.551	70.038	-0.29292					18	11	2	0	0	0	0.027866	1	8451	8451		38.806	0	1	337170			38634	2789	26524	26578	44175	44175					0.00548873309605824
LEELQQELS	9	Unmodified	_LEELQQELS_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	544.777136	1087.53972	-1.3759	-0.00074958	1.5341	0.00083574	0.15815	8.6159E-05	544.7773816132596	90.727	0.29506	90.572	90.39	90.685	-0.1552					11	6	2	0	0	0	0.024397	1	11103	11103		39.253	0	1	72767			38635	7965	26525	26579	44176	44176					-0.0005489221005063882
LEELQVQLQ	9	Unmodified	_LEELQVQLQ_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.292236328125	2	550.303321	1098.59209	-0.48965	-0.00026946	3.5506	0.0019539	3.0609	0.0016844	550.8068779447301	65.332	0.37336	65.369	65.221	65.594	0.037384					18	10	2	0	0	0	0.024427	1	7689	7689		34.173	5.023	1	303180			38636	4961	26526	26580	44177	44177					0.04673690923573304
LEELRKSLQ	9	Unmodified	_LEELRKSLQ_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3243408203125	2	558.324588	1114.63462	-1.1306	-0.00063123	0.43848	0.00024481	-0.69211	-0.00038642	558.3247559952039	38.792	1.136	38.819	38.429	39.565	0.027275					83	30	5	0	0	0	0.1158	1	3227	3227		107.01	0	1	3241500			38637	2250	26527	26581	44178	44178					0.081890860518115
LEELVVQPLLV	11	Unmodified	_LEELVVQPLLV_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	626.3795166015625	2	626.381571	1250.74859	0.42062	0.00026347	-3.4717	-0.0021746	-3.0511	-0.0019111	626.3792952337366	104.3	0.95153	104.3	103.98	104.93	0.0031357					73	26	4	0	0	0	1.0592	1	13362	13362		19.104	0	1	2383900			38638	3453	26528	26582	44179	44179					0.13324556094039508
LEELWTWL	8	Unmodified	_LEELWTWL_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO	REV__nc|ENSG00000038382|O75962-5|TRIO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3165893554688	2	545.2844	1088.55425	-0.45538	-0.00024831	-2.3548	-0.001284	-2.8102	-0.0015323	545.7846156330176	89.164	0.25223	89.164	89.061	89.313	0					7	5	2	0	0	0	0.027866	1	11270	11270		50.025	0.48849	1	61847	+		38639	20078	26529	26583	44180	44180					0.013512247287508217
LEEMYQTGS	9	Unmodified	_LEEMYQTGS_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.813720703125	2	529.228965	1056.44338	-0.047566	-2.5174E-05	-2.9681	-0.0015708	-3.0157	-0.001596	529.2271806513335	80.78	1.1074	80.573	80.051	81.158	-0.20633					35	26	2	0	0	0	0.024477	1	9667	9667		20.947	6.0821	1	99571			38640	3221	26530	26584	44181	44181					-0.08258783041628703
LEEMYQTGS	9	Unmodified	_LEEMYQTGS_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.228965	1056.44338	-1.2599	-0.00066676	-0.46247	-0.00024475	-1.7223	-0.00091151	529.2284521770367	80.515	0.58775	80.363	80.133	80.721	-0.15168	-0.16791	0.001748	NaN	14.865	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106870			38641	3221	26530	26584							-0.08258783041628703
LEEMYQTGS	9	Unmodified	_LEEMYQTGS_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.228965	1056.44338	-0.86333	-0.0004569	-1.5445	-0.00081738	-2.4078	-0.0012743	529.2280334603353	80.592	0.935	80.613	80.189	81.124	0.021439	0.081733	0.00060276	NaN	14.865	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88831			38642	3221	26530	26584							-0.08258783041628703
LEEMYQTGS	9	Unmodified	_LEEMYQTGS_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.228965	1056.44338	-0.081432	-4.3096E-05	-2.6815	-0.0014191	-2.763	-0.0014622	529.227521074774	80.813	1.1382	80.575	80.041	81.179	-0.23784	0.044136	-0.00060076	NaN	14.865	32	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109230			38643	3221	26530	26584							-0.08258783041628703
LEENRQTK	8	Unmodified	_LEENRQTK_					0	0	0		ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2357177734375	2	509.269813	1016.52507	-0.89047	-0.00045349	2.4876	0.0012669	1.5972	0.00081338	509.27082742738736	31.408	0.33627	31.408	31.173	31.509	0					10	7	2	0	0	0	0.027866	1	2090	2090		25.574	0	1	98144			38644	9441	26531	26585	44182	44182					0.01747080432483017
LEEPNRVQ	8	Unmodified	_LEEPNRVQ_					0	0	0		ENSG00000139515|ENST00000381033|PDX1	ENSG00000139515|ENST00000381033|PDX1	ENSG00000139515|ENST00000381033|PDX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.79595947265625	2	492.759081	983.503609	-0.08521	-4.1988E-05	-2.8805	-0.0014194	-2.9657	-0.0014614	492.75714588186526	55.293	0.57671	55.062	54.855	55.432	-0.23087					34	16	3	0	0	0	0.027866	1	5899	5899		21.96	1.013	1	282400			38645	5340	26532	26586	44183	44183					0.01119695403770038
LEEQLKETV	9	Unmodified	_LEEQLKETV_					0	0	0		ENSG00000109519|ENST00000264954|GRPEL1;ENST00000509696.5_1_4:7062591-7066009:-|nuORF;ENST00000504920.5_1_4:7064088-7069780:-|nuORF	ENSG00000109519|ENST00000264954|GRPEL1	ENSG00000109519|ENST00000264954|GRPEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3165283203125	2	544.795329	1087.5761	-0.53817	-0.00029319	-2.7956	-0.001523	-3.3337	-0.0018162	545.2946265515501	90.127	0.45158	90.141	90.043	90.494	0.013443					14	10	2	0	0	0	0.024319	1	11363	11363		39.253	0	1	81992			38646	2981	26533	26587	44184	44184					0.03581984686661599
LEEQLRGQY	9	Unmodified	_LEEQLRGQY_					0	0	0			REV__nc|ENSG00000167767|Q6KB66-2|KRT80	REV__nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3298950195312	2	568.290745	1134.56694	-0.48547	-0.00027589	4.0505	0.0023019	3.5651	0.002026	568.2931552083737	91.529	0.76292	91.517	91.238	92.001	-0.012383					49	17	4	0	0	0	0.024427	1	11571	11571		26.693	6.6961	1	607870	+	+	38647	19597	26534	26588	44185	44185					0.005036361210159157
LEEQLRSTFR	10	Unmodified	_LEEQLRSTFR_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	640.3426513671875	2	639.843676	1277.6728	0.18312	0.00011717	-0.23669	-0.00015144	-0.053568	-3.4275E-05	640.3453501128264	105.34	0.32214	105.33	105.15	105.47	-0.0015945					13	8	2	0	0	0	1.0816	1	13457	13457		35.152	2.3396	1	360010	+		38648	22245	26535	26589	44186	44186					0.04506971966452511
LEERKRQNLVM	11	Unmodified	_LEERKRQNLVM_					0	0	0			REV__ENST00000506925.2_1_12:27702372-27705598:-|nuORF	REV__ENST00000506925.2_1_12:27702372-27705598:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7523193359375	3	472.597766	1414.77147	0.31694	0.00014979	-2.9109	-0.0013757	-2.5939	-0.0012259	472.59644159307487	34.069	0.35951	34.069	33.932	34.292	0					14	8	2	0	0	0	0.024809	1	2511	2511		22.562	7.2241	1	61858	+		38649	34039	26536	26590	44187	44187					0.08067251939883135
LEERNKRA	8	Unmodified	_LEERNKRA_					0	0	0			REV__CON__H-INV:HIT000015463	REV__CON__H-INV:HIT000015463	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.28424072265625	2	508.285797	1014.55704	0.55647	0.00028285	2.0187	0.0010261	2.5752	0.0013089	508.2866895595456	84.325	0.84197	84.166	83.976	84.818	-0.15868					43	19	3	0	0	0	0.53523	1	10200	10200		82.305	0.064519	1	832620	+	+	38650	19531	26537	26591	44188	44188					0.050344929062816846
LEERRHTE	8	Unmodified	_LEERRHTE_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.2716064453125	2	535.272887	1068.53122	-0.49068	-0.00026265	1.0501	0.00056207	0.55938	0.00029942	535.273153707387	104.16	0.67789	104.16	103.85	104.53	0					33	15	3	0	0	0	0.96719	1	13367	13367		42.474	3.6683	1	308070			38651	10406	26538	26592	44189	44189					-0.00030401335970964283
LEERSMPYDDS	11	Unmodified	_LEERSMPYDDS_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.763916015625	3	447.859092	1340.55545	-0.65026	-0.00029123	-1.4627	-0.00065507	-2.1129	-0.00094629	448.19230419737374	30.551	0.29983	30.372	30.283	30.583	-0.17818					8	6	2	0	0	0	0.024792	1	1943	1943		18.531	5.5736	1	32821	+		38652	33266	26539	26593	44190	44190					-0.10120973755306295
LEESKEKLN	9	Unmodified	_LEESKEKLN_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3167114257812	2	545.292953	1088.57135	-0.29681	-0.00016185	-1.2653	-0.00068995	-1.5621	-0.0008518	545.2926101189666	89.062	0.33869	88.934	88.617	88.955	-0.12774					13	7	3	0	0	0	0.024466	1	10851	10851		31.53	0	1	150240			38653	6337	26540	26594	44191	44191					0.030611005439368455
LEESLSSIG	9	Unmodified	_LEESLSSIG_					0	0	0			REV__ENST00000534336.1_1_11:65270530-65270659:+|nuORF	REV__ENST00000534336.1_1_11:65270530-65270659:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7773742675781	2	467.740022	933.465492	-0.052472	-2.4543E-05	-2.6004	-0.0012163	-2.6529	-0.0012409	467.73857035735915	24.418	1.204	24.244	23.873	25.077	-0.17484					36	27	2	0	0	0	0.024436	1	1170	1170		30.504	0	1	169470	+		38654	34635	26541	26595	44192	44192					-0.003902353015519111
LEETKQGNL	9	Unmodified	_LEETKQGNL_					0	0	0		ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.270751953125	2	516.272021	1030.52949	-0.13397	-6.9165E-05	-3.387	-0.0017486	-3.5209	-0.0018178	516.27052545192	51.059	1.5259	51.059	50.21	51.736	0					100	43	5	0	0	0	0.29158	1	5410	5410		76.774	7.9873	1	6683900			38655	9344	26542	26596	44193	44193					0.01544544855391905
LEETKQGNL	9	Unmodified	_LEETKQGNL_					0	0	0		ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2708129882812	2	516.272021	1030.52949	-1.236	-0.00063809	-3.249	-0.0016774	-4.485	-0.0023155	516.2696016634007	50.955	1.5503	51.042	50.06	51.61	0.087006					106	44	5	0	0	0	0.27161	1	5330	5330		79.451	5.4763	1	7243800			38656	9344	26542	26596	44194	44194					0.01544544855391905
LEETRLGKL	9	Unmodified	_LEETRLGKL_					0	0	0		ENSG00000105085|ENST00000263390|MED26;nc|ENSG00000105085|O95402-2|MED26	ENSG00000105085|ENST00000263390|MED26	ENSG00000105085|ENST00000263390|MED26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3003540039062	2	529.813856	1057.61316	-0.13746	-7.2826E-05	-1.8535	-0.00098198	-1.9909	-0.0010548	529.8128109429776	38.687	0.52591	38.461	38.21	38.736	-0.2257					27	13	3	0	0	0	0.024323	1	3219	3219		35.618	8.9254	1	1148900			38657	2633	26543	26597	44195	44195					0.08665701023096517
LEEVELEPE	9	Unmodified	_LEEVELEPE_					0	0	0		nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.788818359375	2	543.763694	1085.51284	-0.792	-0.00043066	-1.461	-0.00079442	-2.253	-0.0012251	543.7625993793611	85.968	2.5667	85.923	84.617	87.184	-0.045097					129	60	3	0	0	0	0.024412	1	10633	10633		24.203	0	1	510800			38658	1301	26544	26598	44196	44196					-0.026500008212224202
LEEVELEPE	9	Unmodified	_LEEVELEPE_					0	0	0		nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.763694	1085.51284	-0.059912	-3.2578E-05	-2.0689	-0.001125	-2.1288	-0.0011576	543.7622063240357	85.938	1.0749	85.742	85.258	86.333	-0.19508	-0.084125	-0.00074759	NaN	24.203	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140360			38659	1301	26544	26598							-0.026500008212224202
LEEVELEPE	9	Unmodified	_LEEVELEPE_					0	0	0		nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.763694	1085.51284	0.48592	0.00026422	-2.4981	-0.0013584	-2.0122	-0.0010941	543.7618664887476	85.859	1.413	85.709	85.03	86.443	-0.14967	-0.11753	-0.0012143	NaN	24.203	42	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123560			38660	1301	26544	26598							-0.026500008212224202
LEEVELEPE	9	Unmodified	_LEEVELEPE_					0	0	0		nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.763694	1085.51284	-0.3156	-0.00017161	-1.9987	-0.0010868	-2.3143	-0.0012584	543.7624137245	85.973	1.4198	85.835	85.326	86.746	-0.13734	0.0087687	-0.00067126	NaN	24.203	37	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101510			38661	1301	26544	26598							-0.026500008212224202
LEEVQAQLR	9	Unmodified	_LEEVQAQLR_					0	0	0			REV__ENSG00000109089|ENST00000337231|CDR2L	REV__ENSG00000109089|ENST00000337231|CDR2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7302856445312	2	543.301113	1084.58767	-0.43025	-0.00023376	0.3738	0.00020309	-0.056451	-3.067E-05	543.301134407663	51.874	0.47209	51.755	51.575	52.048	-0.11876					22	12	2	0	0	0	0.024487	1	5330	5330		17.365	0	1	285910	+		38662	21780	26545	26599	44197	44197					0.04876226500641678
LEEVRELLA	9	Unmodified	_LEEVRELLA_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.8297729492188	2	536.305864	1070.59717	-0.39389	-0.00021124	-2.4448	-0.0013112	-2.8387	-0.0015224	536.3049863794963	49.362	0.49871	49.261	49.068	49.567	-0.1008					18	12	2	0	0	0	0.024397	1	4994	4994		39.253	0	1	204250			38663	8829	26546	26600	44198	44198					0.06469994786220923
LEEWKCLDPT	10	Unmodified	_LEEWKCLDPT_					0	0	0		ENSG00000197385|ENST00000360311|ZNF860	ENSG00000197385|ENST00000360311|ZNF860	ENSG00000197385|ENST00000360311|ZNF860	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.18719482421875	3	411.865518	1232.57472	-0.26685	-0.0001099	3.5295	0.0014537	3.2626	0.0013438	411.8669067012078	36.335	0.68035	36.13	35.886	36.566	-0.20518					27	17	2	0	0	0	0.03519	1	2816	2816		30.569	0	1	299920			38664	9989	26547	26601	44199	44199					-0.03225972673749311
LEEWRGLL	8	Unmodified	_LEEWRGLL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1;ENST00000478916.5_1_6:152456172-152464916:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2925109863281	2	508.282192	1014.54983	-0.61699	-0.0003136	-4.3696	-0.002221	-4.9866	-0.0025346	508.27997377385793	74.204	0.21722	74.214	74.051	74.268	0.0096512					5	4	2	0	0	0	0.027866	1	8993	8993		57.811	20.652	1	61480			38665	4485	26548	26602	44200	44200					0.04313760305853975
LEEWYGEAQL	10	Unmodified	_LEEWYGEAQL_					0	0	0			REV__ENST00000471501.1_1_1:11709834-11710766:-|nuORF	REV__ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.7533874511719	3	413.196033	1236.56627	-0.051756	-2.1386E-05	-4.3927	-0.0018151	-4.4445	-0.0018364	413.1941371710973	22.16	0.66327	21.958	21.712	22.375	-0.20199					22	13	3	0	0	0	0.03519	1	781	781		27.047	0	1	46495	+		38666	22286	26549	26603	44201	44201					-0.0425520331871212
LEFDSPVAAT	10	Unmodified	_LEFDSPVAAT_					0	0	0		AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant;nc|ENSG00000178522|Q9NP70-2|AMBN;ENSG00000178522|ENST00000322937|AMBN	AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant	AMBN|p.S377Afs*10|1|0.23|ENSG00000178522|chr4:70606511-70606511|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2781372070312	2	525.261122	1048.50769	-0.51392	-0.00026994	2.9642	0.001557	2.4503	0.001287	525.262587137697	56.44	0.48074	56.281	56.009	56.49	-0.15878					19	11	2	0	0	0	0.03519	1	6143	6143		32.812	13.709	1	163750			38667	81	26550	26604	44202	44202					-0.014622598931964603
LEFFDISR	8	Unmodified	_LEFFDISR_					0	0	0			REV__ENST00000578195.6_1_17:29059108-29061959:+|nuORF	REV__ENST00000578195.6_1_17:29059108-29061959:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.30810546875	2	513.766374	1025.5182	-0.55039	-0.00028277	1.406	0.00072237	0.85563	0.00043959	513.7664929611624	45.992	0.68684	46.044	45.655	46.342	0.051395					38	19	3	0	0	0	0.027866	1	4484	4484		23.042	0	1	537860	+		38668	35489	26551	26605	44203	44203					0.0064576755189591495
LEFHWFIP	8	Unmodified	_LEFHWFIP_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54931266-54960686:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.3047485351562	2	544.781828	1087.5491	-1.1804	-0.00064307	1.6491	0.00089841	0.4687	0.00025534	544.7823379932445	60.532	1.1204	60.319	59.713	60.834	-0.2134					71	29	3	0	0	0	0.027866	1	6926	6926		14.664	0	1	871680			38669	8703	26552	26606	44204	44204					0.008829656568195787
LEFIQLTYGK	10	Unmodified	_LEFIQLTYGK_					0	0	0			REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.5599365234375	3	404.560535	1210.65977	-1.0221	-0.00041351	-1.3046	-0.00052779	-2.3267	-0.0009413	404.5600554460574	33.263	0.99211	33.097	32.76	33.752	-0.16565					86	24	6	0	0	0	1.0461	1	2338	2338		39.873	2.365	1	10407000	+		38670	21199	26553	26607	44205	44205					0.06287140854374229
LEFKRVLD	8	Unmodified	_LEFKRVLD_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3229675292969	2	510.297842	1018.58113	0.55245	0.00028191	-4.0262	-0.0020545	-3.4737	-0.0017726	510.29588627417166	77.635	1.5626	77.393	77.077	78.639	-0.24232					53	36	2	0	0	0	0.027866	1	9361	9361		21.96	0	1	131380			38671	6043	26554	26608	44206	44206					0.07258333339962064
LEFLFYIN	8	Unmodified	_LEFLFYIN_					0	0	0		ENST00000518303.5_1_8:18658714-18662398:-|nuORF	ENST00000518303.5_1_8:18658714-18662398:-|nuORF	ENST00000518303.5_1_8:18658714-18662398:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7966918945312	2	529.781493	1057.54843	0.22814	0.00012087	3.3279	0.0017631	3.556	0.0018839	529.7831403796383	21.751	0.71478	21.573	21.256	21.971	-0.17721					36	14	4	0	0	0	0.027866	1	710	710		47.916	1.9636	1	99710			38672	15928	26555	26609	44207	44207					0.021961262171089402
LEFLLGIK	8	Unmodified	_LEFLLGIK_					0	0	0		ENST00000361564.8_1_4:109588566-109588689:+|nuORF	ENST00000361564.8_1_4:109588566-109588689:+|nuORF	ENST00000361564.8_1_4:109588566-109588689:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.7815246582031	2	466.794404	931.574254	-0.49804	-0.00023248	1.9699	0.00091955	1.4719	0.00068706	466.7953193397917	29.748	0.16854	29.503	29.399	29.567	-0.24524					5	3	2	0	0	0	0.027866	1	1835	1835		38.806	12.01	1	31326			38673	12800	26556	26610	44208	44208					0.10573020459378313
LEFLLGIK	8	Unmodified	_LEFLLGIK_					0	0	0		ENST00000361564.8_1_4:109588566-109588689:+|nuORF	ENST00000361564.8_1_4:109588566-109588689:+|nuORF	ENST00000361564.8_1_4:109588566-109588689:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.794404	931.574254	-0.30955	-0.0001445	-2.6355	-0.0012302	-2.945	-0.0013747	466.79317687271345	29.63	0.12457	29.48	29.418	29.542	-0.14952	-0.011392	-0.00054206	NaN	23.042	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57502			38674	12800	26556	26610							0.10573020459378313
LEFLLVPVIG	10	Unmodified	_LEFLLVPVIG_					0	0	0		nc|ENSG00000100196|O43731-2|KDELR3;ENSG00000100196|ENST00000216014|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3431396484375	2	550.341718	1098.66888	0.013268	7.3017E-06	4.1436	0.0022804	4.1568	0.0022877	550.3438288788167	17.393	0.23371	17.251	17.134	17.368	-0.14278					10	4	3	0	0	0	1.1283	1	163	163		25.45	0	1	77930			38675	18124	26557	26611	44209	44209					0.12349534210716229
LEFRGRTK	8	Unmodified	_LEFRGRTK_					0	0	0			REV__ENSG00000265354|ENST00000580018|TIMM23	REV__ENSG00000265354|ENST00000580018|TIMM23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7900390625	2	503.793258	1005.57196	-0.74357	-0.0003746	1.4159	0.00071333	0.67236	0.00033873	503.7935993316292	35.162	0.38535	34.975	34.835	35.22	-0.18675					13	9	2	0	0	0	0.027866	1	2628	2628		11.511	0	1	68447	+		38676	29134	26558	26612	44210	44210					0.06939984774282948
LEFRYKKRVYK	11	Unmodified	_LEFRYKKRVYK_					0	0	0		ENSG00000162105|ENST00000601538|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.96875	3	510.636549	1528.88782	-0.35391	-0.00018072	-3.6592	-0.0018685	-4.0131	-0.0020492	510.63447806200884	103.19	1.539	103.06	102.45	103.99	-0.12783					79	36	3	0	0	0	1.1107	1	12896	12896		8.4073	2.4062	1	331380			38677	6920	26559	26613	44211	44211					0.14452938502063262
LEFVHPKL	8	Unmodified	_LEFVHPKL_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.77740478515625	2	491.789653	981.564752	-0.63846	-0.00031399	-3.2933	-0.0016196	-3.9318	-0.0019336	491.78740164350637	36.514	0.46486	36.552	36.338	36.803	0.038044					16	12	2	0	0	0	0.027866	1	2867	2867		25.45	1.2474	1	140240	+		38678	26116	26560	26614	44212	44212					0.07323252173853234
LEFVKLSRA	9	Unmodified	_LEFVKLSRA_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3048706054688	2	531.818941	1061.62333	-0.4561	-0.00024256	-0.98149	-0.00052197	-1.4376	-0.00076454	531.8185952920438	63.31	0.57615	63.059	62.724	63.3	-0.25141					29	14	3	0	0	0	0.024337	1	7359	7359		58.23	3.5076	1	366830	+		38679	19290	26561	26615	44213	44213					0.09498308748334239
LEFVMKVEP	9	Unmodified	_LEFVMKVEP_					0	0	0			REV__nc|ENSG00000114812|P32241-4|VIPR1	REV__nc|ENSG00000114812|P32241-4|VIPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.302001953125	2	546.293911	1090.57327	-0.68263	-0.00037292	-1.1086	-0.00060562	-1.7912	-0.00097853	546.2923172160087	65.213	0.64461	64.979	64.529	65.174	-0.2345					19	15	2	0	0	0	0.024427	1	7382	7382		34.173	11.13	1	123460	+		38680	22147	26562	26616	44214	44214					0.03160438028180579
LEGAQRVY	8	Unmodified	_LEGAQRVY_					0	0	0		USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.26409912109375	2	468.250892	934.48723	-0.15497	-7.2565E-05	-2.3238	-0.0010881	-2.4788	-0.0011607	468.2496005844734	43.451	0.13844	43.338	43.288	43.426	-0.11253					5	3	2	0	0	0	0.027866	1	4001	4001		24.203	0	1	63839			38681	38131	26563	26617	44215	44215					0.0173661423766589
LEGAVKSKFK	10	Unmodified	_LEGAVKSKFK_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8299560546875	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0344	2	11277	11277;11362		41.427	7.2541	1	4896800			38682	4670	26564	26618	44216;44217	44216					0.10094577919812764
LEGAVKSKFK	10	Unmodified	_LEGAVKSKFK_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.83056640625	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.1266	1	11357	11357		29.17	2.1227	1	4870500			38683	4670	26564	26618	44218	44218					0.10094577919812764
LEGAVKSKFK	10	Unmodified	_LEGAVKSKFK_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8302612304688	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0719	1	11135	11135		36.447	2.2742	1	4967900			38684	4670	26564	26618	44219	44219					0.10094577919812764
LEGAVKSKFK	10	Unmodified	_LEGAVKSKFK_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8306274414062	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0719	2	11042	10874;11042		36.447	4.9169	1	6583300			38685	4670	26564	26618	44220;44221	44221					0.10094577919812764
LEGDLIIL	8	Unmodified	_LEGDLIIL_					0	0	0		ENST00000483721.1_1_2:99786008-99786047:-|nuORF	ENST00000483721.1_1_2:99786008-99786047:-|nuORF	ENST00000483721.1_1_2:99786008-99786047:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2667541503906	2	443.268219	884.521884	-0.72455	-0.00032117	-2.0142	-0.00089283	-2.7387	-0.001214	443.26723674965314	85.728	1.1392	85.752	85.367	86.506	0.023666					72	26	4	0	0	0	1.0133	1	10682	10682		35.201	0	1	1182500			38686	15288	26566	26619	44222	44222					0.07500437325779785
LEGDSLRWVF	10	Unmodified	_LEGDSLRWVF_					0	0	0			REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF	REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	611.3563842773438	2	611.316763	1220.61897	-0.878	-0.00053674	2.1408	0.0013087	1.2628	0.00077196	611.3173865693859	94.81	0.21513	94.81	94.616	94.831	0					6	4	2	0	0	0	0.03519	1	12056	12056		32.812	0	1	44125	+		38687	22950	26567	26620	44223	44223					0.01748799534743739
LEGEDWPLV	9	Unmodified	_LEGEDWPLV_					0	0	0			REV__ENST00000525284.5_1_15:101598322-101602587:+|nuORF	REV__ENST00000525284.5_1_15:101598322-101602587:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7990112304688	2	529.263665	1056.51278	0.10664	5.6442E-05	-2.4042	-0.0012724	-2.2975	-0.001216	529.7630741421768	83.444	0.58684	83.275	82.905	83.492	-0.16916					26	13	3	0	0	0	0.024412	1	10073	10073		31.955	7.4508	1	61973	+		38688	34411	26568	26621	44224	44224					-0.013219560305742561
LEGEECKTLPD	11	Unmodified	_LEGEECKTLPD_					0	0	0		ENSG00000183662|ENST00000478136|TAFA1	ENSG00000183662|ENST00000478136|TAFA1	ENSG00000183662|ENST00000478136|TAFA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	616.3255004882812	2	617.287011	1232.55947	-0.64934	-0.00040083	-4.1703	-0.0025743	-4.8196	-0.0029751	617.284272402067	57.836	0.38213	57.646	57.407	57.789	-0.19017					19	9	3	0	0	0	0.024727	1	6309	6309		12.812	0	1	474750			38689	9256	26569	26622	44225	44225					-0.047508842616025504
LEGEINKLPIL	11	Unmodified	_LEGEINKLPIL_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8722534179688	2	619.871371	1237.72819	-0.47108	-0.00029201	-2.6122	-0.0016192	-3.0832	-0.0019112	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.0483	1	11971	11971		25.574	3.6142	1	4765600	+		38690	20300	26570	26623	44226	44226					0.11883385434225602
LEGHGEEPVC	10	Unmodified	_LEGHGEEPVC_					0	0	0			REV__ENST00000423469.6_1_8:144919671-144920039:-|nuORF	REV__ENST00000423469.6_1_8:144919671-144920039:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.811767578125	2	535.234581	1068.45461	-0.20399	-0.00010919	-3.4318	-0.0018368	-3.6358	-0.001946	535.2321901063511	32.213	0.26259	31.976	31.867	32.13	-0.23667					7	5	2	0	0	0	0.03519	1	2212	2212		35.618	0	1	48511	+		38691	32220	26571	26624	44227	44227					-0.07687960947487227
LEGHSKTIL	9	Unmodified	_LEGHSKTIL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2876892089844	2	499.287474	996.560395	0.7385	0.00036872	-1.2764	-0.0006373	-0.53791	-0.00026857	499.2868437970992	55.686	1.1057	55.686	55.319	56.424	0					76	30	3	0	0	0	0.11092	2	6175	6163;6175		108.09	6.4868	1	25199000			38692	2536	26572	26625	44228;44229	44229					0.06197742960296182
LEGHSKTIL	9	Unmodified	_LEGHSKTIL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.2873840332031	2	499.287474	996.560395	-0.12558	-6.2702E-05	-0.44748	-0.00022342	-0.57306	-0.00028612	499.2872665484356	55.766	1.0869	55.61	55.16	56.247	-0.15601					73	29	3	0	0	0	0.16468	1	6169	6169		96.19	2.995	1	22451000			38693	2536	26572	26625	44230	44230					0.06197742960296182
LEGIIFTK	8	Unmodified	_LEGIIFTK_					0	0	0			REV__nc|ENSG00000166347|P00167-2|CYB5A	REV__nc|ENSG00000166347|P00167-2|CYB5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.22723388671875	2	460.776211	919.537869	-0.14688	-6.7681E-05	-3.0908	-0.0014242	-3.2377	-0.0014919	460.77463316511484	27.233	1.1015	27.233	26.406	27.508	0					50	27	2	0	0	0	0.027866	1	1478	1478		19.997	0	1	311550	+		38694	26004	26573	26626	44231	44231					0.07488143562682126
LEGIIFTK	8	Unmodified	_LEGIIFTK_					0	0	0			REV__nc|ENSG00000166347|P00167-2|CYB5A	REV__nc|ENSG00000166347|P00167-2|CYB5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.776211	919.537869	-0.42663	-0.00019658	-2.6658	-0.0012283	-3.0924	-0.0014249	460.7747905818126	27	0.9882	27.081	26.331	27.319	0.081293	-0.07302	0.00017804	NaN	25.574	46	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387760	+		38695	26004	26573	26626							0.07488143562682126
LEGIQDRV	8	Unmodified	_LEGIQDRV_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.25750732421875	2	465.256174	928.497795	0.72687	0.00033818	-0.8808	-0.0004098	-0.15393	-7.1617E-05	465.25576941565913	59.241	0.8159	59.241	58.895	59.711	0					80	21	5	0	0	0	0.42327	1	6734	6734		94.006	14.555	1	14942000			38696	745	26574	26627	44232	44232					0.03068596892092046
LEGIQDRV	8	Unmodified	_LEGIQDRV_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2564392089844	2	465.256174	928.497795	1.0038	0.00046704	-1.0929	-0.00050849	-0.089099	-4.1454E-05	465.25569371198	59.102	0.80449	59.188	58.813	59.617	0.085682					67	21	4	0	0	0	0.76379	1	6644	6644		62.107	1.1355	1	14951000			38697	745	26574	26627	44233	44233					0.03068596892092046
LEGKLRDL	8	Unmodified	_LEGKLRDL_					0	0	0		ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2929382324219	2	472.282192	942.549831	0.32601	0.00015397	-0.14628	-6.9087E-05	0.17973	8.4881E-05	472.28194119588227	50.624	1.0482	50.624	50.274	51.323	0					52	29	2	0	0	0	0.027866	1	5278	5278		44.117	0	1	2918100			38698	8811	26575	26628	44234	44234					0.07625760305836593
LEGKLSKAGPF	11	Unmodified	_LEGKLSKAGPF_					0	0	0		ENST00000422847.1_1_10:81978339-81978543:+|nuORF	ENST00000422847.1_1_10:81978339-81978543:+|nuORF	ENST00000422847.1_1_10:81978339-81978543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.3160400390625	2	573.829506	1145.64446	-0.76321	-0.00043795	2.6234	0.0015054	1.8602	0.0010674	573.8310407776835	56.638	1.1471	56.736	56.321	57.468	0.097893					47	31	2	0	0	0	0.024771	1	6248	6248		42.864	31.353	1	274730			38699	14015	26576	26629	44235	44235					0.07746274057171831
LEGKRSKDL	9	Unmodified	_LEGKRSKDL_					0	0	0			REV__ENSG00000198056|ENST00000338193|PRIM1	REV__ENSG00000198056|ENST00000338193|PRIM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3030395507812	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.64897	1	10764	10764		49.536	0.094497	1	11897000	+		38700	28380	26577	26630	44236	44236					0.07224530363282611
LEGLIHRMIL	10	Unmodified	_LEGLIHRMIL_					0	0	0			REV__PARL|p.F330Lfs*23|1|0.32|ENSG00000175193|chr3:183833530-183833530|A/-|frameshift_variant	REV__PARL|p.F330Lfs*23|1|0.32|ENSG00000175193|chr3:183833530-183833530|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8556518554688	2	597.855001	1193.69545	-0.39778	-0.00023782	3.043	0.0018193	2.6452	0.0015814	598.3585984414767	90.781	2.8287	90.792	88.918	91.747	0.011276					183	67	3	0	0	0	1.0271	1	11474	11474		42.396	3.1433	1	2105300	+		38701	37348	26578	26631	44237	44237					0.10634899830415634
LEGLLQQVRA	10	Unmodified	_LEGLLQQVRA_					0	0	0		nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.721923828125	2	563.83258	1125.65061	-0.31542	-0.00017784	3.7164	0.0020954	3.401	0.0019176	563.8345024322807	49.361	0.46098	49.26	48.955	49.416	-0.1008					26	11	3	0	0	0	0.03519	1	4948	4948		20.947	0	1	417820			38702	6367	26579	26632	44238	44238					0.09280792288723205
LEGLVGLEP	9	Unmodified	_LEGLVGLEP_					0	0	0			REV__ENST00000395011.5_1_10:72060408-72060609:-|nuORF	REV__ENST00000395011.5_1_10:72060408-72060609:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7724609375	2	463.7633	925.512048	-0.50763	-0.00023542	-1.448	-0.00067152	-1.9556	-0.00090694	463.7626895870386	23.487	0.37737	23.487	23.36	23.737	0					14	8	2	0	0	0	0.024436	1	931	931		16.473	0	1	50910	+		38703	31684	26580	26633	44239	44239					0.04631249320391362
LEGRVLRTRL	10	Unmodified	_LEGRVLRTRL_					0	0	0			REV__ENSG00000158050|ENST00000288943|DUSP2	REV__ENSG00000158050|ENST00000288943|DUSP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9232177734375	3	404.922689	1211.74624	-0.99259	-0.00040192	0.60463	0.00024483	-0.38797	-0.0001571	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.118	1	1365	1365		20.03	1.4994	1	42819000	+		38704	25168	26581	26634	44240	44240					0.14883565199602344
LEGSGRPKPE	10	Unmodified	_LEGSGRPKPE_					0	0	0		ENST00000489935.1_1_1:110754015-110754261:+|nuORF	ENST00000489935.1_1_1:110754015-110754261:+|nuORF	ENST00000489935.1_1_1:110754015-110754261:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2366943359375	2	535.285463	1068.55637	-0.68195	-0.00036504	4.4434	0.0023785	3.7615	0.0020135	535.2876830098928	69.951	0.66774	69.684	69.206	69.874	-0.26725					18	15	2	0	0	0	0.03519	1	8057	8057		20.947	8.7403	1	110340			38705	15423	26582	26635	44241	44241					0.024836534665837462
LEGSRNDL	8	Unmodified	_LEGSRNDL_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2301025390625	2	452.230156	902.445759	0.22669	0.00010251	-0.34661	-0.00015675	-0.11992	-5.4234E-05	452.22992100141795	26.03	0.66526	26.111	25.707	26.372	0.081293					46	15	4	0	0	0	0.50239	1	1256	1256		85.359	5.4203	1	3470200	+		38706	29234	26583	26636	44242	44242					-0.009365665216591879
LEGVLRLM	8	Unmodified	_LEGVLRLM_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.778076171875	2	465.775688	929.536823	0.30012	0.00013979	3.7382	0.0017412	4.0383	0.001881	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.97924	1	9689	9689		40.573	10.069	1	1281300			38707	9617	26584	26637	44243	44243					0.06923605922099796
LEGVLRLM	8	Unmodified	_LEGVLRLM_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.777587890625	2	465.775688	929.536823	-0.52619	-0.00024508	4.4718	0.0020829	3.9456	0.0018378	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	1.0574	1	9868	9868		25.45	4.9683	1	1029300			38708	9617	26584	26637	44244	44244					0.06923605922099796
LEGYLLSP	8	Unmodified	_LEGYLLSP_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.2323913574219	2	446.244744	890.474934	-1.3465	-0.00060088	3.9429	0.0017595	2.5964	0.0011586	446.24663907091394	37.964	0.33129	37.964	37.803	38.134	0					17	9	3	0	0	0	0.027866	1	3116	3116		17.365	0	1	95073			38709	4011;18234	26585	26638	44245	44245					0.025315777746413914
LEGYLRRHQK	10	Unmodified	_LEGYLRRHQK_					0	0	0		nc|ENSG00000269343|E7ETH6|ZNF587B;ENSG00000269343|ENST00000594901|ZNF587B	nc|ENSG00000269343|E7ETH6|ZNF587B	nc|ENSG00000269343|E7ETH6|ZNF587B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.9127502441406	3	433.914194	1298.72075	-0.26592	-0.00011539	-2.9331	-0.0012727	-3.199	-0.0013881	433.9129246882194	21.127	1.3876	21.036	20.439	21.826	-0.090094					76	28	5	0	0	0	1.0639	1	613	613		37.508	3.0073	1	1169200			38710	10996	26586	26639	44246	44246					0.08334090677180939
LEHEEGKIL	9	Unmodified	_LEHEEGKIL_					0	0	0		ENSG00000109061|ENST00000226207|MYH1;ENSG00000133020|ENST00000403437|MYH8;ENSG00000125414|ENST00000245503|MYH2;ENSG00000264424|ENST00000255381|MYH4;ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000109061|ENST00000226207|MYH1;ENSG00000133020|ENST00000403437|MYH8;ENSG00000264424|ENST00000255381|MYH4;ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2708740234375	2	534.290214	1066.56587	-0.49287	-0.00026334	2.291	0.0012241	1.7982	0.00096074	534.2914081880286	52.929	0.57113	52.781	52.488	53.06	-0.14724					23	14	2	0	0	0	0.024495	1	5625	5625		42.396	3.59	1	177400			38711	10024;4669;1976;10964;2956	26587	26640	44247	44247					0.035254217521242026
LEHIGHAF	8	Unmodified	_LEHIGHAF_					0	0	0			REV__ENST00000555997.1_1_14:69256252-69257717:-|nuORF	REV__ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2871398925781	2	462.240327	922.466101	-0.32244	-0.00014905	2.0943	0.00096808	1.7719	0.00081903	462.2405556144229	52.829	0.19169	52.829	52.673	52.864	0					6	4	2	0	0	0	0.027866	1	5659	5659		31.579	3.3246	1	90291	+		38712	27779	26588	26641	44248	44248					0.0017664892880020489
LEHIGRAP	8	Unmodified	_LEHIGRAP_					0	0	0			REV__nc|ENSG00000104415|O95388-4|CCN4	REV__nc|ENSG00000104415|O95388-4|CCN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.2323913574219	2	446.753601	891.49265	-1.1369	-0.00050793	-1.4856	-0.00066369	-2.6225	-0.0011716	446.7527249404179	37.842	0.33935	37.842	37.596	37.936	0					16	9	2	0	0	0	0.027866	1	3116	3116		17.365	3.5896	1	160430	+		38713	36531	26589	26642	44249	44249					0.042563378201293744
LEHKIIIRVQT	11	Unmodified	_LEHKIIIRVQT_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENSG00000005075|ENST00000292614|POLR2J;ENST00000427076.5_1_7:44053248-44058742:-|nuORF;ENST00000326391.6_1_7:44054045-44058742:-|nuORF	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7431640625	3	450.613633	1348.81907	-0.91493	-0.00041228	3.0893	0.0013921	2.1744	0.00097979	450.6149903395087	26.969	0.44111	27.05	26.841	27.282	0.081293					26	11	3	0	0	0	0.024828	1	1357	1357		1.2319	0	1	417830			38714	10673	26590	26643	44250	44250					0.15861274202370623
LEHPSLSKD	9	Unmodified	_LEHPSLSKD_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.78955078125	2	513.266739	1024.51892	0.080955	4.1551E-05	4.1544	0.0021323	4.2353	0.0021738	513.268735930763	80.536	2.025	80.299	80	82.025	-0.23784					69	48	3	0	0	0	0.02435	1	9809	9809		26.693	0	1	380860	+		38715	23141	26591	26644	44251	44251					0.0076456220097043115
LEHRFGPS	8	Unmodified	_LEHRFGPS_					0	0	0		nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1;ENST00000569504.5_1_16:67859786-67861483:+|nuORF;nc|ENSG00000102904|Q2TAA8-2|TSNAXIP1;ENST00000466164.5_1_16:67859786-67861893:+|nuORF;ENST00000568990.5_1_16:67859786-67861893:+|nuORF	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.7772521972656	2	471.743234	941.471915	-0.27599	-0.0001302	1.4857	0.00070087	1.2097	0.00057067	471.74361334939664	28.98	0.21359	28.809	28.725	28.939	-0.17069					6	4	2	0	0	0	0.027866	1	1723	1723		35.201	3.2459	1	29402			38716	2442	26592	26645	44252	44252					-0.001162525595191255
LEHVIRKV	8	Unmodified	_LEHVIRKV_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7413024902344	2	497.313826	992.613099	-0.91603	-0.00045556	0.88736	0.0004413	-0.028675	-1.426E-05	497.3140163049407	26.61	0.47428	26.447	26.234	26.708	-0.16331					13	11	2	0	0	0	0.027866	1	1357	1357		12.207	0	1	82849	+		38717	21782	26593	26646	44253	44253					0.11649745813747359
LEHWRKYPPLD	11	Unmodified	_LEHWRKYPPLD_					0	0	0			REV__nc|ENSG00000104763|Q13510-3|ASAH1	REV__nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2713928222656	3	485.257738	1452.75138	-0.11345	-5.5052E-05	1.8537	0.00089954	1.7403	0.00084449	485.2583664955199	32.856	0.52913	32.918	32.653	33.182	0.062885					17	13	2	0	0	0	0.024851	1	2231	2231		14.086	1.1285	1	116510	+		38718	21460	26594	26647	44254	44254					0.0431182427157637
LEIAKETQ	8	Unmodified	_LEIAKETQ_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2728576660156	2	466.258382	930.502212	-1.206	-0.00056233	2.6376	0.0012298	1.4316	0.00066749	466.259350680679	20.473	0.43094	20.473	20.225	20.656	0					10	8	2	0	0	0	0.027866	1	553	553		26.796	0	1	22987	+		38719	23205	26595	26648	44255	44255					0.03418061315016985
LEIALSRTL	9	Unmodified	_LEIALSRTL_					0	0	0			REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.31396484375	2	508.310949	1014.60735	5.2026	0.0026445	-0.48446	-0.00024625	4.7182	0.0023983	508.3106435930682	17.013	0.36498	16.763	16.61	16.974	-0.25049					14	8	2	0	0	0	0.99726	1	109	109		20.947	3.582	1	58993	+		38720	19935	26596	26649	44256	44256					0.1006260251143658
LEIALSRTL	9	Unmodified	_LEIALSRTL_					0	0	0			REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.310949	1014.60735	1.5333	0.00077937	3.5113	0.0017848	5.0446	0.0025642	508.31246363979517	16.967	0.40223	16.813	16.655	17.058	-0.15393	0.042469	0.0027283	NaN	20.947	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27888	+		38721	19935	26596	26649							0.1006260251143658
LEIALSRTL	9	Unmodified	_LEIALSRTL_					0	0	0			REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.310949	1014.60735	-0.32786	-0.00016665	5.1954	0.0026409	4.8676	0.0024742	508.3134537851513	16.945	0.34238	16.737	16.519	16.862	-0.20777	-0.034213	0.0044404	NaN	20.947	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33403	+		38722	19935	26596	26649							0.1006260251143658
LEIALSRTL	9	Unmodified	_LEIALSRTL_					0	0	0			REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	508.310949	1014.60735	5.2026	0.0026445	-0.48446	-0.00024625	4.7182	0.0023983	508.3106435930682	17.013	0.36498	16.763	16.61	16.974	-0.25049	-0.0082566	-0.0013339	NaN	20.947	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58993	+		38723	19935	26596	26649							0.1006260251143658
LEIALTLVV	9	Unmodified	_LEIALTLVV_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|101|2|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|101|2|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|101|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.8124694824219	2	485.812793	969.611034	0.40498	0.00019674	-0.6947	-0.00033749	-0.28972	-0.00014075	485.8123485160711	89.125	2.098	88.987	88.607	90.705	-0.13762					128	49	4	0	0	0	0.67308	1	10845	10845		47.916	0	1	3117100			38724	17724	26597	26650	44257	44257					0.12501272285282994
LEIARKLEM	9	Oxidation (M)	_LEIARKLEM(Oxidation (M))_		LEIARKLEM(1)		LEIARKLEM(62)	0	0	1		ENSG00000006607|ENST00000264042|FARP2;FARP2|p.R342Qfs*25|1|0.18|ENSG00000006607|chr2:241434310-241434311|-/T|frameshift_variant;nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2	ENSG00000006607|ENST00000264042|FARP2	ENSG00000006607|ENST00000264042|FARP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.816650390625	2	559.815541	1117.61653	0.050072	2.8031E-05	-0.010944	-6.1266E-06	0.039128	2.1904E-05	559.8155046600118	80.867	2.2167	80.629	80.287	82.504	-0.23784					212	52	6	0	0	0	0.45795	1	9904	9904		62.107	7.3311	1	31546000			38725	797	26598	26651	44258	44258		23			0.06242627805431766
LEIFIRLNR	9	Unmodified	_LEIFIRLNR_					0	0	0		FUBP1-USP33|2|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	587.29541015625	2	587.358765	1172.70298	0.064471	3.7868E-05	-1.5157	-0.00089024	-1.4512	-0.00085237	587.3576482067307	74.033	0.17151	74.033	73.913	74.084	0					5	3	2	0	0	0	0.024541	1	9052	9052		11.511	0	1	49216			38726	17664	26599	26652	44259	44259					0.12353375422321733
LEIKGAKKPGL	11	Unmodified	_LEIKGAKKPGL_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ALDH1L2|p.G638Afs*16|1|0.08|ENSG00000136010|chr12:105040645-105040645|C/-|frameshift_variant;ENSG00000136010|ENST00000258494|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	577.3663940429688	2	577.368798	1152.72304	-0.064666	-3.7336E-05	-3.8154	-0.0022029	-3.88	-0.0022402	577.366523758484	101.17	0.81793	101.17	100.89	101.71	-0.0054474					51	18	4	0	0	0	0.96599	1	12871	12871		44.377	1.981	1	1373400			38727	61	26600	26653	44260	44260					0.1527912636227029
LEIKGAKKPGL	11	Unmodified	_LEIKGAKKPGL_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ALDH1L2|p.G638Afs*16|1|0.08|ENSG00000136010|chr12:105040645-105040645|C/-|frameshift_variant;ENSG00000136010|ENST00000258494|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3655395507812	2	577.368798	1152.72304	0.46361	0.00026767	-4.3189	-0.0024936	-3.8553	-0.0022259	577.3661806344381	101.22	0.81992	101.09	100.81	101.63	-0.13156					47	17	5	0	0	0	1.0017	1	12546	12546		36.447	1.2947	1	985230			38728	61	26600	26653	44261	44261					0.1527912636227029
LEIKGAKKPGL	11	Unmodified	_LEIKGAKKPGL_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ALDH1L2|p.G638Afs*16|1|0.08|ENSG00000136010|chr12:105040645-105040645|C/-|frameshift_variant;ENSG00000136010|ENST00000258494|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3663330078125	2	577.368798	1152.72304	-0.040808	-2.3561E-05	-3.8221	-0.0022067	-3.8629	-0.0022303	577.3664534876788	101.22	0.73849	101.09	100.81	101.55	-0.12576					52	16	4	0	0	0	1.0017	1	12592	12592		36.447	4.9169	1	981470			38729	61	26600	26653	44262	44262					0.1527912636227029
LEIKVFIDIK	10	Unmodified	_LEIKVFIDIK_					0	0	0		ENSG00000144182|ENST00000651691|LIPT1	ENSG00000144182|ENST00000651691|LIPT1	ENSG00000144182|ENST00000651691|LIPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.5874328613281	3	406.588313	1216.74311	0.3256	0.00013238	-3.0295	-0.0012318	-2.7039	-0.0010994	406.5873231361823	25.27	2.8978	25.098	24.732	27.63	-0.17151					174	72	6	0	0	0	0.99657	1	1192	1192		46.457	6.3986	1	31222000			38730	5720	26601	26654	44263	44263					0.14340877302220179
LEILLEDTV	9	Unmodified	_LEILLEDTV_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2797241210938	2	522.794798	1043.57504	0.63549	0.00033223	-3.1456	-0.0016445	-2.5101	-0.0013123	523.2948452063988	59.71	0.46907	59.71	59.482	59.951	0					19	12	2	0	0	0	0.024354	1	6830	6830		30.504	7.4612	1	183540			38731	10959	26602	26655	44264	44264					0.05499770317760522
LEILTVNTV	9	Unmodified	_LEILTVNTV_					0	0	0		ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7785339355469	2	501.297507	1000.58046	-0.25008	-0.00012536	0.51616	0.00025875	0.26609	0.00013339	501.29785492128934	69.865	0.78961	69.878	69.242	70.032	0.012413					32	19	3	0	0	0	0.024427	1	8325	8325		34.173	14.176	1	285480			38732	8402	26603	26656	44265	44265					0.08019493900235375
LEILTVNTV	9	Unmodified	_LEILTVNTV_					0	0	0		ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.297507	1000.58046	-0.030492	-1.5285E-05	-2.0716	-0.0010385	-2.1021	-0.0010538	501.29653070495976	69.89	0.20847	69.64	69.524	69.732	-0.25063	-0.074443	-0.0013096	NaN	19.997	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56081			38733	8402	26603	26656							0.08019493900235375
LEINPCLEN	9	Unmodified	_LEINPCLEN_					0	0	0		ENSG00000136011|ENST00000388887|STAB2;STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7713623046875	2	522.755149	1043.49575	0.21954	0.00011476	3.1185	0.0016302	3.3381	0.001745	522.7567307031574	72.728	0.21107	72.464	72.3	72.511	-0.26479					5	4	2	0	0	0	0.024405	1	8519	8519		20.947	0	1	42090			38734	4969	26604	26657	44266	44266					-0.024261999080408714
LEINRAIYY	9	Unmodified	_LEINRAIYY_					0	0	0		nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.T1015Pfs*26|1|0.37|ENSG00000116731|chr1:13780836-13780836|C/-|frameshift_variant;ENST00000502724.5_1_1:14065411-14095647:+|nuORF;ENST00000491134.5_1_1:14057588-14095647:+|nuORF;nc|ENSG00000116731|Q13029-4|PRDM2	nc|ENSG00000116731|Q13029-2|PRDM2	nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.26904296875	2	577.813856	1153.61316	-0.52776	-0.00030495	-0.084887	-4.9049E-05	-0.61265	-0.000354	577.813823191418	63.795	0.42186	63.603	63.418	63.84	-0.19243					21	10	3	0	0	0	0.024381	1	7205	7205		45.952	21.749	1	255060			38735	3572	26605	26658	44267	44267					0.04249701023081798
LEIPEEQESIH	11	Unmodified	_LEIPEEQESIH_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.788330078125	3	441.885747	1322.63541	-0.19435	-8.5882E-05	-4.0638	-0.0017957	-4.2581	-0.0018816	441.8834067047441	40.774	0.30579	40.797	40.629	40.934	0.023006					10	8	2	0	0	0	0.024723	1	3568	3568		28.577	0	1	161480	+		38736	21420	26606	26659	44268	44268					-0.013001640897982725
LEIPLFLLG	9	Unmodified	_LEIPLFLLG_					0	0	0		ENST00000396049.4_1_2:74382388-74382565:-|nuORF	ENST00000396049.4_1_2:74382388-74382565:-|nuORF	ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.8150939941406	2	507.815336	1013.61612	0.10536	5.3503E-05	0.35352	0.00017952	0.45888	0.00023303	507.81538695748867	103.96	1.2849	103.96	103.44	104.73	-0.0032196					76	31	4	0	0	0	0.78069	1	13243	13243		40.573	0	1	1138000			38737	13542	26607	26660	44269	44269					0.10985576147913889
LEIPLLRAE	9	Unmodified	_LEIPLLRAE_					0	0	0		ENST00000583244.1_1_17:72954766-72955083:-|nuORF	ENST00000583244.1_1_17:72954766-72955083:-|nuORF	ENST00000583244.1_1_17:72954766-72955083:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.738525390625	2	527.318774	1052.623	-0.18642	-9.8305E-05	0.15114	7.9698E-05	-0.035285	-1.8606E-05	527.3186377459903	53.542	0.56115	53.345	53.089	53.65	-0.19739					23	15	2	0	0	0	0.024457	1	5568	5568		21.96	1.013	1	383810			38738	17190	26608	26661	44270	44270					0.09878889028459525
LEIPVRLQAD	10	Unmodified	_LEIPVRLQAD_					0	0	0			REV__ENST00000482361.1_1_6:41877193-41888846:-|nuORF	REV__ENST00000482361.1_1_6:41877193-41888846:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.7914428710938	2	577.332413	1152.65027	-1.0046	-0.00058001	4.067	0.002348	3.0624	0.001768	577.3345601352928	81.874	0.76971	81.731	81.357	82.127	-0.14249					40	17	3	0	0	0	0.03519	1	9808	9808		40.058	22.693	1	392440	+		38739	33481	26609	26662	44271	44271					0.08005372568845814
LEIPVRLQAD	10	Unmodified	_LEIPVRLQAD_					0	0	0			REV__ENST00000482361.1_1_6:41877193-41888846:-|nuORF	REV__ENST00000482361.1_1_6:41877193-41888846:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	577.332413	1152.65027	0.40022	0.00023106	2.6795	0.001547	3.0797	0.001778	577.3337505703684	81.92	0.81293	81.691	81.395	82.208	-0.2289	-0.015548	-0.00080503	NaN	38.754	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470080	+		38740	33481	26609	26662							0.08005372568845814
LEIPVRLQAD	10	Unmodified	_LEIPVRLQAD_					0	0	0			REV__ENST00000482361.1_1_6:41877193-41888846:-|nuORF	REV__ENST00000482361.1_1_6:41877193-41888846:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.332413	1152.65027	-0.25561	-0.00014757	3.5669	0.0020593	3.3112	0.0019117	577.3341822678536	81.89	0.76888	81.697	81.419	82.188	-0.19334	-0.0096138	0.00021953	NaN	38.754	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452260	+		38741	33481	26609	26662							0.08005372568845814
LEIQLTEQ	8	Unmodified	_LEIQLTEQ_					0	0	0		nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B;ENST00000579766.1_1_17:30376071-30377294:+|nuORF;ENST00000417404.2_1_17:28960066-28961284:+|nuORF;ENST00000579094.1_1_17:30374694-30380344:+|nuORF;LRRC37B|p.I876Yfs*2|1|0.33|ENSG00000185158|chr17:32049342-32049343|-/T|frameshift_variant;ENSG00000185158|ENST00000543378|LRRC37B	nc|ENSG00000185158|Q96QE4-2|LRRC37B	nc|ENSG00000185158|Q96QE4-2|LRRC37B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2918701171875	2	487.263665	972.512776	-0.28473	-0.00013874	-3.0041	-0.0014638	-3.2889	-0.0016025	487.26202119323335	81.505	0.54668	81.363	81.11	81.656	-0.14249					21	12	2	0	0	0	0.027866	1	9822	9822		18.324	0	1	93091			38742	18589	26610	26663	44272	44272					0.025420439694130437
LEIQRQQSD	9	Unmodified	_LEIQRQQSD_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2648315429688	2	558.785827	1115.5571	0.24905	0.00013916	-0.23282	-0.0001301	0.016224	9.0657E-06	558.7855179656249	80.285	0.71233	80.079	79.63	80.343	-0.20632					28	16	2	0	0	0	0.024319	1	9606	9606		47.657	0	1	82616			38743	18548	26611	26664	44273	44273					0.003944481156167967
LEIRLMEV	8	Unmodified	_LEIRLMEV_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.80059814453125	2	501.786253	1001.55795	0.070687	3.547E-05	2.1748	0.0010913	2.2455	0.0011268	502.2881047492762	46.343	0.28821	46.343	46.09	46.378	0					12	7	2	0	0	0	0.027866	1	4573	4573		33.516	10.473	1	345130	+		38744	20112	26612	26665	44274	44274					0.057235712309761766
LEISKSVNL	9	Unmodified	_LEISKSVNL_					0	0	0		ENSG00000128710|ENST00000249501|HOXD10	ENSG00000128710|ENST00000249501|HOXD10	ENSG00000128710|ENST00000249501|HOXD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.77880859375	2	501.795132	1001.57571	0.49359	0.00024768	2.2136	0.0011108	2.7072	0.0013585	501.79608900403355	71.945	0.22269	71.954	71.765	71.988	0.0097733					7	5	2	0	0	0	0.024319	1	8640	8640		66.429	5.4573	1	330680			38745	4310	26613	26666	44275	44275					0.07498609757476515
LEITGLNLL	9	Unmodified	_LEITGLNLL_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.3001708984375	2	493.30005	984.585547	0.041685	2.0563E-05	0.026383	1.3015E-05	0.068067	3.3578E-05	493.2999512044171	92.977	1.3369	92.977	92.178	93.515	0					50	31	3	0	0	0	0.29104	1	11807	11807		76.847	2.5916	1	1256300	+		38746	25763	26614	26667	44276	44276					0.09263797762855575
LEITSRPQ	8	Unmodified	_LEITSRPQ_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2996520996094	2	472.263999	942.513445	-0.59314	-0.00028012	-1.698	-0.00080189	-2.2911	-0.001082	472.26269024743607	38.419	0.70844	38.201	37.861	38.569	-0.21848					27	19	2	0	0	0	0.027866	1	3139	3139		65.803	0	1	416190			38747	4290	26615	26668	44277	44277					0.039888834091470926
LEIVKELIKN	10	Unmodified	_LEIVKELIKN_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.5757141113281	3	400.251701	1197.73327	1.8355	0.00073467	0.91771	0.00036732	2.7532	0.001102	400.25255860177316	17.823	0.34943	17.669	17.458	17.807	-0.15403					9	6	2	0	0	0	0.03519	1	238	238		37.508	12.989	1	15061			38748	4780	26616	26669	44278	44278					0.14231689296866534
LEIVTVNYFE	10	Unmodified	_LEIVTVNYFE_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.5500793457031	3	409.548295	1225.62306	-0.037538	-1.5374E-05	3.9477	0.0016168	3.9102	0.0016014	409.54989992128066	53.207	1.8381	53.06	52.607	54.445	-0.14723					125	50	4	0	0	0	1.0447	2	5690	5690;5740		40.058	7.3076	1	8919000			38749	12714	26617	26670	44279;44280	44279					0.01926844237800651
LEIVTVNYFE	10	Unmodified	_LEIVTVNYFE_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.5499267578125	3	409.548295	1225.62306	0.43796	0.00017937	3.4279	0.0014039	3.8659	0.0015833	409.54962954510665	53.113	0.88559	52.986	52.552	53.437	-0.12705					67	22	4	0	0	0	1.0909	1	5552	5552		33.922	4.3709	1	4178500			38750	12714	26617	26670	44281	44281					0.01926844237800651
LEIVTVNYFE	10	Unmodified	_LEIVTVNYFE_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.5492248535156	3	409.548295	1225.62306	0.015685	6.4238E-06	3.9053	0.0015994	3.921	0.0016058	409.54984548409846	53.155	0.88425	52.965	52.51	53.395	-0.18982					72	22	4	0	0	0	1.0344	2	5543	5530;5543		41.427	5.9717	1	4935100			38751	12714	26617	26670	44282;44283	44283					0.01926844237800651
LEIYNKKIN	9	Unmodified	_LEIYNKKIN_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|3|1|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|3|1|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|3|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.8107299804688	2	567.829506	1133.64446	-0.83647	-0.00047497	-1.0206	-0.00057953	-1.8571	-0.0010545	567.8285278114764	68.917	0.34082	68.917	68.754	69.094	0					12	8	2	0	0	0	0.024263	1	8299	8299		51.335	0	1	128890			38752	17832	26618	26671	44284	44284					0.0829827405721062
LEKAFLEV	8	Unmodified	_LEKAFLEV_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.7738037109375	2	474.773668	947.532783	0.66162	0.00031412	-0.79343	-0.0003767	-0.1318	-6.2575E-05	474.77321307172184	99.111	1.2212	99.122	98.522	99.743	0.010239					65	27	3	0	0	0	0.95679	1	12652	12652		44.117	5.3107	1	2003000			38753	3981	26619	26672	44285	44285					0.056918397000458754
LEKAHLVEV	9	Unmodified	_LEKAHLVEV_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7877807617188	2	519.303124	1036.5917	0.93334	0.00048469	-2.1105	-0.001096	-1.1772	-0.00061133	519.3018617596875	85.538	0.33195	85.389	85.243	85.575	-0.14967					10	7	2	0	0	0	0.024344	1	10369	10369		54.776	10.399	1	50709			38754	6681	26620	26673	44286	44286					0.07486315994378856
LEKAKQHL	8	Unmodified	_LEKAKQHL_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MSMS	OPSCC_40_ClassI_Rep-3	6	483.7905578613281	2	483.790184	965.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.463	1	36.265	35.765	36.765	-0.19829								0	0	0	0.73703	1	2845	2845		38.806	1.647	1				38755	3670	26621	26674	44287	44287					0.08165466542754984
LEKAKVSLNDC	11	Unmodified	_LEKAKVSLNDC_					0	0	0		ENST00000565341.5_1_16:784529-790985:-|nuORF;ENST00000567455.5_1_16:787149-790985:-|nuORF;ENST00000562752.5_1_16:784227-790985:-|nuORF;ENSG00000103245|ENST00000251588|CIAO3	ENST00000565341.5_1_16:784529-790985:-|nuORF	ENST00000565341.5_1_16:784529-790985:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2195739746094	3	407.216551	1218.62782	-0.7882	-0.00032097	1.3385	0.00054507	0.55032	0.0002241	407.21594018532676	46.272	0.22708	46.07	45.93	46.157	-0.20226					7	5	2	0	0	0	0.024742	1	4444	4444		25.892	4.1113	1	72273			38756	16915	26622	26675	44288	44288					0.02725405108958512
LEKARAKNK	9	Unmodified	_LEKARAKNK_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.316650390625	2	529.327465	1056.64038	-0.20124	-0.00010652	-4.4107	-0.0023347	-4.6119	-0.0024412	529.3248652457545	36.669	0.20148	36.464	36.323	36.525	-0.20518					5	4	2	0	0	0	0.024427	1	2869	2869		34.173	0	1	54479			38757	2577	26623	26676	44289	44289					0.11432229354113588
LEKAVSWW	8	Unmodified	_LEKAVSWW_					0	0	0			REV__ENST00000397226.2_2_2:37423743-37424447:+|nuORF	REV__ENST00000397226.2_2_2:37423743-37424447:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2840576171875	2	509.77146	1017.52837	-0.16765	-8.5461E-05	-4.292	-0.0021879	-4.4596	-0.0022734	509.76917768758267	46.882	0.75126	46.612	46.192	46.943	-0.26939					39	20	3	0	0	0	0.027866	1	4521	4521		44.117	12.162	1	1951400	+		38758	31765	26624	26677	44290	44290					0.020303752771383188
LEKAVSWW	8	Unmodified	_LEKAVSWW_					0	0	0			REV__ENST00000397226.2_2_2:37423743-37424447:+|nuORF	REV__ENST00000397226.2_2_2:37423743-37424447:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2843017578125	2	509.77146	1017.52837	-0.61075	-0.00031134	-3.5653	-0.0018175	-4.176	-0.0021288	509.7696307265479	46.7	0.43464	46.506	46.345	46.779	-0.19387					32	12	3	0	0	0	0.027866	1	4498	4498		53.351	10.955	1	1751100	+		38759	31765	26624	26677	44291	44291					0.020303752771383188
LEKDLNLMD	9	Unmodified	_LEKDLNLMD_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2;ENST00000514579.1_1_5:75950824-75955864:+|nuORF	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.316650390625	2	545.776082	1089.53761	-1.7341	-0.00094643	-1.4691	-0.00080182	-3.2032	-0.0017482	545.7748771453114	90.541	0.54822	90.541	90.255	90.804	0					19	12	2	0	0	0	0.024367	1	11426	11426		44.377	14.059	1	119580			38760	5827	26625	26678	44292	44292					-0.003576442195026175
LEKDLNLMD	9	Unmodified	_LEKDLNLMD_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2;ENST00000514579.1_1_5:75950824-75955864:+|nuORF	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.31689453125	2	545.776082	1089.53761	-0.28265	-0.00015426	-3.5771	-0.0019523	-3.8597	-0.0021065	545.7736676489935	88.596	0.89738	88.612	88.236	89.133	0.015907					34	20	2	0	0	0	0.024418	1	11110	11110		37.812	12.237	1	165550			38761	5827	26625	26678	44293	44293					-0.003576442195026175
LEKEELYI	8	Unmodified	_LEKEELYI_					0	0	0			REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7822265625	2	518.78169	1035.54883	-0.49785	-0.00025827	-0.093886	-4.8706E-05	-0.59173	-0.00030698	518.7814855112049	79.108	0.91544	78.936	78.568	79.484	-0.17226					57	21	4	0	0	0	0.6536	1	9783	9783		71.296	2.811	1	1215800	+		38762	36805	26626	26679	44294	44294					0.03247501146279319
LEKEGKPH	8	Unmodified	_LEKEGKPH_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant;CASP8AP2|p.R229*|1|0.15|ENSG00000118412|chr6:89862393-89862427|ACGTTCTCATTATCAGGTTGGCGAGGGTAGCTCAA/-|frameshift_variant	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.74566650390625	2	469.258717	936.50288	0.26639	0.00012501	0.25221	0.00011835	0.5186	0.00024336	469.25829153221605	19.933	0.49207	19.769	19.328	19.82	-0.16402					12	9	2	0	0	0	0.027866	1	464	464		18.324	0	1	12923			38763	3681	26627	26680	44295	44295					0.0320890075471425
LEKEILIL	8	Unmodified	_LEKEILIL_					0	0	0			REV__ENSG00000268235|ENST00000622971|TCP11X1	REV__ENSG00000268235|ENST00000622971|TCP11X1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.8114318847656	2	485.812793	969.611034	0.75246	0.00036555	-1.56	-0.00075785	-0.8075	-0.0003923	485.81208633493674	106.86	0.61832	106.86	106.6	107.22	0					27	19	3	0	0	0	0.6536	1	13732	13732		71.296	0	1	177660	+		38764	28798	26628	26681	44296	44296					0.1250127228530573
LEKEKTVI	8	Unmodified	_LEKEKTVI_					0	0	0			REV__nc|ENSG00000155016|Q7Z449-2|CYP2U1	REV__nc|ENSG00000155016|Q7Z449-2|CYP2U1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.29205322265625	2	480.292225	958.569897	-0.25747	-0.00012366	-0.46899	-0.00022525	-0.72646	-0.00034891	480.2919784247279	31.566	1.0632	31.381	31.062	32.125	-0.18503					83	25	4	0	0	0	0.26064	2	2134	2122;2134		128.86	0	1	10630000	+		38765	34150	26629	26682	44297;44298	44298					0.08895511245816579
LEKEKTVI	8	Unmodified	_LEKEKTVI_					0	0	0			REV__nc|ENSG00000155016|Q7Z449-2|CYP2U1	REV__nc|ENSG00000155016|Q7Z449-2|CYP2U1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.29217529296875	2	480.292225	958.569897	-0.21393	-0.00010275	-0.60719	-0.00029163	-0.82112	-0.00039438	480.29189697454643	31.641	1.0486	31.489	31.161	32.21	-0.15231					82	25	5	0	0	0	0.27973	2	2093	2093;2116		120.62	0	1	10654000	+		38766	34150	26629	26682	44299;44300	44299					0.08895511245816579
LEKELKEYID	10	Unmodified	_LEKELKEYID_					0	0	0			REV__ENSG00000083535|ENST00000326291|PIBF1	REV__ENSG00000083535|ENST00000326291|PIBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.344970703125	2	640.342643	1278.67073	1.0477	0.00067089	3.3152	0.0021229	4.3629	0.0027938	640.344804406662	105.27	0.62677	105.27	105.06	105.69	0					28	15	3	0	0	0	1.0508	1	13515	13515		39.253	4.1008	1	332270	+		38767	20716	26630	26683	44301	44301					0.04254498438012888
LEKETPENL	9	Unmodified	_LEKETPENL_					0	0	0		nc|ENSG00000156011|Q9NYI0-3|PSD3;PSD3|p.H1010Lfs*13|1|0.07|ENSG00000156011|chr8:18535863-18535864|-/TGGTCATGGAGCAAAATAGG|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000519633.1_1_8:18662024-18666359:-|nuORF;ENST00000518963.5_1_8:18656789-18662365:-|nuORF;ENST00000519653.5_1_8:18644335-18666359:-|nuORF;PSD3|p.K747Sfs*73|1|0.19|ENSG00000156011|chr8:18632786-18632786|T/-|frameshift_variant;ENST00000518303.5_1_8:18658714-18662398:-|nuORF	nc|ENSG00000156011|Q9NYI0-3|PSD3;ENST00000518303.5_1_8:18658714-18662398:-|nuORF	nc|ENSG00000156011|Q9NYI0-3|PSD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.80859375	2	536.779679	1071.5448	-0.88595	-0.00047556	1.6602	0.00089118	0.77429	0.00041562	537.282218952216	85.139	0.66539	85.082	84.857	85.522	-0.057617					24	15	2	0	0	0	0.02435	1	10632	10632		42.396	8.2236	1	80409			38768	6505;15928	26631	26684	44302	44302					0.011894116525809295
LEKEYKVKI	9	Unmodified	_LEKEYKVKI_					0	0	0		PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3455810546875	2	575.347532	1148.68051	-1.1631	-0.00066918	-2.3888	-0.0013744	-3.5519	-0.0020436	575.3460130844637	97.061	1.8236	97.061	96.615	98.439	0					112	41	5	0	0	0	0.97973	1	12357	12357		24.519	5.4157	1	3789000			38769	2271	26632	26685	44303	44303					0.11211731234061517
LEKFLSTVQL	10	Unmodified	_LEKFLSTVQL_					0	0	0			REV__nc|ENSG00000123240|Q96CV9-3|OPTN;REV__KLHL2-OPTN|2|fusion	REV__nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3426513671875	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.1295	1	11916	11916		26.063	0.48933	1	12648000	+		38770	22686;36186	26633	26686	44304	44304					0.09415427371436635
LEKFLSTVQL	10	Unmodified	_LEKFLSTVQL_					0	0	0			REV__nc|ENSG00000123240|Q96CV9-3|OPTN;REV__KLHL2-OPTN|2|fusion	REV__nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3433227539062	2	589.344989	1176.67542	-1.6034	-0.00094497	-2.0205	-0.0011907	-3.6239	-0.0021357	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.118	1	11234	11234		30.318	0	1	5827400	+		38771	22686;36186	26633	26686	44305	44305					0.09415427371436635
LEKFLSTVQL	10	Unmodified	_LEKFLSTVQL_					0	0	0			REV__nc|ENSG00000123240|Q96CV9-3|OPTN;REV__KLHL2-OPTN|2|fusion	REV__nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	0.72729	2	11621	11595;11621		65.465	19.493	1	15816000	+		38772	22686;36186	26633	26686	44306;44307	44307					0.09415427371436635
LEKFPPSSD	9	Unmodified	_LEKFPPSSD_					0	0	0			REV__ENSG00000116711|ENST00000367466|PLA2G4A	REV__ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.8037109375	2	510.25584	1018.49713	0.37597	0.00019184	-1.2591	-0.00064245	-0.88311	-0.00045061	510.2553516411263	84.415	0.72659	84.278	84.02	84.747	-0.13789					34	16	3	0	0	0	0.024506	1	10251	10251		23.042	1.0826	1	302670	+		38773	22295	26634	26687	44308	44308					-0.0113824254760857
LEKFRQLL	8	Unmodified	_LEKFRQLL_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MSMS	OPSCC_40_ClassI_Rep-1	4	523.8212280273438	2	523.821484	1045.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.239	1	48.141	47.641	48.641	-0.097553								0	0	0	0.34979	1	4774	4774		102.77	0	1				38774	1305	26635	26688	44309	44309					0.1074261261094307
LEKFRQLL	8	Unmodified	_LEKFRQLL_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MSMS	OPSCC_40_ClassI_Rep-1	4	523.82080078125	2	523.821484	1045.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.389	1	48.291	47.791	48.791	-0.097553								0	0	0	0.3462	1	4800	4800		73.975	0	1				38775	1305	26635	26688	44310	44310					0.1074261261094307
LEKFRQLL	8	Unmodified	_LEKFRQLL_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8215942382812	2	523.821484	1045.62842	-1.0109	-0.00052951	0.13312	6.9732E-05	-0.87774	-0.00045978	523.8215921563113	48.547	1.6941	48.271	47.63	49.324	-0.27598					132	45	4	0	0	0	0.35998	1	4821	4821		102.77	3.3984	1	19150000			38776	1305	26635	26688	44311	44311					0.1074261261094307
LEKFRQLL	8	Unmodified	_LEKFRQLL_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.8216552734375	2	523.821484	1045.62842	0.073224	3.8356E-05	-0.98076	-0.00051374	-0.90754	-0.00047539	523.821047079256	48.33	1.7007	48.143	47.561	49.261	-0.18684					145	45	4	0	0	0	0.6248	1	4785	4785		73.975	2.679	1	16926000			38777	1305	26635	26688	44312	44312					0.1074261261094307
LEKFSITRI	9	Unmodified	_LEKFSITRI_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8300170898438	2	553.832049	1105.64954	0.31464	0.00017426	-4.0369	-0.0022358	-3.7222	-0.0020615	553.8296747582538	87.083	2.4623	87.083	85.708	88.17	0					172	58	4	0	0	0	0.70156	2	10931	10931;10972		45.972	3.108	1	1317800	+		38778	33549	26636	26689	44313;44314	44313					0.10094577919812764
LEKFSITRI	9	Unmodified	_LEKFSITRI_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8298950195312	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.77768	2	11289	11192;11289		40.778	1.5253	1	4896800	+		38779	33549	26636	26689	44315;44316	44316					0.10094577919812764
LEKFSITRI	9	Unmodified	_LEKFSITRI_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8307495117188	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	0.56934	2	11293	11268;11293		54.776	13.998	1	4967900	+		38780	33549	26636	26689	44317;44318	44318					0.10094577919812764
LEKFSITRI	9	Unmodified	_LEKFSITRI_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.70156	3	10636	10614;10636;10674		45.972	5.1941	1	1748900	+		38781	33549	26636	26689	44319;44320;44321	44320					0.10094577919812764
LEKFSITRI	9	Unmodified	_LEKFSITRI_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	553.832049	1105.64954	-0.047374	-2.6237E-05	-3.6408	-0.0020164	-3.6882	-0.0020426	553.829864190126	87.126	2.4196	87.09	85.747	88.167	-0.035355	-0.031112	0.00024844	NaN	45.972	169	57	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1369000	+		38782	33549	26636	26689							0.10094577919812764
LEKFSITRI	9	Unmodified	_LEKFSITRI_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	553.832049	1105.64954	0.36825	0.00020395	-4.0996	-0.0022705	-3.7314	-0.0020666	553.8296512023196	87.117	2.5491	87.138	85.735	88.284	0.021255	0.016475	-0.00025977	NaN	45.972	196	60	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1337200	+		38783	33549	26636	26689							0.10094577919812764
LEKFYECFV	9	Unmodified	_LEKFYECFV_					0	0	0			REV__ENSG00000129354|ENST00000250244|AP1M2	REV__ENSG00000129354|ENST00000250244|AP1M2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.283543	1176.55253	-0.34608	-0.00020394	1.0828	0.00063807	0.73672	0.00043413	589.2837634570252	91.229	0.62746	91.09	90.903	91.531	-0.13942					25	14	3	0	0	0	0.024381	1	11221	11221		37.159	0	1	138970	+		38784	23046	26637	26690	44322	44322					-0.028681523515160734
LEKGALRAE	9	Unmodified	_LEKGALRAE_					0	0	0			REV__ENSG00000271601|ENST00000604000|LIX1L	REV__ENSG00000271601|ENST00000604000|LIX1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7850646972656	2	493.785099	985.555644	-0.16765	-8.2781E-05	-0.49274	-0.00024331	-0.66039	-0.00032609	493.78483325201876	27.471	1.4147	27.315	26.503	27.918	-0.15664					77	33	5	0	0	0	0.28753	1	1481	1481		77.318	8.5308	1	4793900	+		38785	29167	26638	26691	44323	44323					0.06228858817519267
LEKGALRAE	9	Unmodified	_LEKGALRAE_					0	0	0			REV__ENSG00000271601|ENST00000604000|LIX1L	REV__ENSG00000271601|ENST00000604000|LIX1L	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	493.785099	985.555644	-0.51995	-0.00025675	-0.17083	-8.4352E-05	-0.69078	-0.0003411	493.7849854693808	27.319	1.0362	27.151	26.851	27.887	-0.16816	-0.080531	0.00012909	NaN	77.318	79	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4233900	+		38786	29167	26638	26691							0.06228858817519267
LEKGRASALI	10	Unmodified	_LEKGRASALI_					0	0	0			REV__NEIL1|p.S48L|1|0.67|ENSG00000140398|chr15:75349048-75349048|C/T|missense_variant	REV__NEIL1|p.S48L|1|0.67|ENSG00000140398|chr15:75349048-75349048|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3004150390625	2	529.321848	1056.62914	-0.9883	-0.00052313	-1.5428	-0.00081662	-2.5311	-0.0013397	529.3215905040312	38.925	1.0867	38.702	38.457	39.543	-0.22311					45	28	4	0	0	0	0.03519	1	3225	3225		24.519	8.046	1	1167100	+		38787	37274	26639	26692	44324	44324					0.10309407260001535
LEKHGLVNVS	10	Unmodified	_LEKHGLVNVS_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2769165039062	2	548.31148	1094.60841	-0.31486	-0.00017264	-1.7329	-0.00095018	-2.0478	-0.0011228	548.309939895397	61.958	0.47247	61.701	61.505	61.978	-0.25725					12	11	2	0	0	0	0.03519	1	6956	6956		68.846	8.7279	1	86469	+		38788	20012	26640	26693	44325	44325					0.06488816880346349
LEKHGLVNVS	10	Unmodified	_LEKHGLVNVS_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.31148	1094.60841	-0.65853	-0.00036108	-3.0393	-0.0016665	-3.6978	-0.0020275	548.3098125100339	61.726	0.64053	61.726	61.334	61.974	0	0.062546	-0.00025548	NaN	68.846	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127650	+		38789	20012	26640	26693							0.06488816880346349
LEKHGLVNVS	10	Unmodified	_LEKHGLVNVS_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.31148	1094.60841	-0.22853	-0.00012531	-2.7146	-0.0014884	-2.9431	-0.0016137	548.3093650250697	61.875	0.4299	61.649	61.336	61.766	-0.22663	-0.014469	0.00010061	NaN	68.846	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117300	+		38790	20012	26640	26693							0.06488816880346349
LEKHGLVNVS	10	Unmodified	_LEKHGLVNVS_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.31148	1094.60841	-0.59878	-0.00032832	-3.3333	-0.0018277	-3.9321	-0.002156	548.3089693843161	61.506	0.53524	61.577	61.315	61.85	0.071129	-0.086019	-0.00057794	NaN	68.846	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108190	+		38791	20012	26640	26693							0.06488816880346349
LEKHREKLL	9	Unmodified	_LEKHREKLL_					0	0	0		ENST00000481407.5_1_7:92207439-92210911:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B;ENST00000332869.5_1_10:60475484-60475616:+|nuORF	ENST00000481407.5_1_7:92207439-92210911:-|nuORF	ENST00000481407.5_1_7:92207439-92210911:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.3301391601562	2	583.356222	1164.69789	0.018338	1.0698E-05	0.40097	0.00023391	0.41931	0.00024461	583.3566943416098	59.776	0.35502	59.776	59.559	59.914	0					14	9	2	0	0	0	0.024457	1	6857	6857		29.15	0	1	128220			38792	10722	26641	26694	44326	44326					0.12213071559722266
LEKIAENEF	9	Unmodified	_LEKIAENEF_					0	0	0			REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8346557617188	2	546.782222	1091.54989	-1.1745	-0.00064222	0.95767	0.00052364	-0.21686	-0.00011858	546.7824697533073	48.689	0.39297	48.409	48.218	48.611	-0.27977					17	10	2	0	0	0	0.024438	1	4854	4854		44.377	0	1	197760	+		38793	21156	26642	26695	44327	44327					0.007777155151870829
LEKILKIW	8	Unmodified	_LEKILKIW_					0	0	0		ENSG00000103740|ENST00000258873|ACSBG1	ENSG00000103740|ENST00000258873|ACSBG1	ENSG00000103740|ENST00000258873|ACSBG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7549438476562	2	521.836603	1041.65865	0.022044	1.1503E-05	-4.0153	-0.0020953	-3.9932	-0.0020838	521.8342893713958	23.855	0.72807	23.675	23.436	24.164	-0.17989					34	16	4	0	0	0	0.027866	1	997	997		3.41	0	1	291650			38794	2526	26643	26696	44328	44328					0.13948971276136035
LEKIQQRLFLI	11	Unmodified	_LEKIQQRLFLI_					0	0	0			REV__nc|ENSG00000095787|Q9BTA9-5|WAC	REV__nc|ENSG00000095787|Q9BTA9-5|WAC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.6234130859375	3	467.62565	1399.85512	0.37525	0.00017548	-4.4396	-0.0020761	-4.0644	-0.0019006	467.6235097930596	107.2	0.48961	107.05	106.83	107.32	-0.15771					55	18	4	0	0	0	1.0621	1	13305	13305		21.78	4.6137	1	578270	+		38795	20975	26644	26697	44329	44329					0.17118731379218843
LEKKDLIS	8	Unmodified	_LEKKDLIS_					0	0	0			REV__nc|ENSG00000211815|A0A075B6V5|TRAV36DV7	REV__nc|ENSG00000211815|A0A075B6V5|TRAV36DV7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2811584472656	2	473.2844	944.554247	-0.40604	-0.00019217	0.62187	0.00029432	0.21583	0.00010215	473.28458733739893	53.664	0.47886	53.467	53.201	53.68	-0.19739					42	13	4	0	0	0	0.027866	1	5659	5659		38.806	0	1	4629500	+		38796	37114	26645	26698	44330	44330					0.079752247287729
LEKKFSPQL	9	Unmodified	_LEKKFSPQL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3157958984375	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	0.89532	1	10443	10443		32.751	2.4328	1	5204600	+		38797	20082	26646	26699	44331	44331					0.08222889028479585
LEKKKEKLE	9	Unmodified	_LEKKKEKLE_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.8507690429688	2	572.850438	1143.68632	1.0476	0.00060011	-1.1953	-0.0006847	-0.14767	-8.4594E-05	572.8497388899385	18.085	0.69034	17.929	17.705	18.396	-0.15637					38	13	4	0	0	0	0.14181	1	274	274		101.25	16.092	1	1862300	+		38798	20473	26647	26700	44332	44332					0.12022829745706076
LEKKKEKLE	9	Unmodified	_LEKKKEKLE_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.8504638671875	2	572.850438	1143.68632	-0.025051	-1.435E-05	-0.26767	-0.00015333	-0.29272	-0.00016768	572.8502706145961	18.142	0.8424	17.935	17.664	18.507	-0.20669					42	16	4	0	0	0	0.013337	2	268	255;268		176.44	20.86	1	1777800	+		38799	20473	26647	26700	44333;44334	44334					0.12022829745706076
LEKKKLMA	8	Unmodified	_LEKKKLMA_					0	0	0		ENSG00000135312|ENST00000369947|HTR1B	ENSG00000135312|ENST00000369947|HTR1B	ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.8008117675781	2	480.799163	959.583773	-0.09375	-4.5075E-05	3.1194	0.0014998	3.0257	0.0014547	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	0.97924	1	11937	11937		40.573	8.6178	1	24672000			38800	4875	26648	26701	44335	44335					0.10236465473246881
LEKKKLMA	8	Unmodified	_LEKKKLMA_					0	0	0		ENSG00000135312|ENST00000369947|HTR1B	ENSG00000135312|ENST00000369947|HTR1B	ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.80126953125	2	480.799163	959.583773	0.25492	0.00012256	2.9064	0.0013974	3.1613	0.0015199	480.8004656046571	94.354	2.1881	94.232	93.711	95.899	-0.12215					167	50	6	0	0	0	1.0574	1	11688	11688		26.796	2.2921	1	16484000			38801	4875	26648	26701	44336	44336					0.10236465473246881
LEKKKSSSIAS	11	Unmodified	_LEKKKSSSIAS_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.341796875	2	589.342978	1176.6714	-1.3447	-0.00079247	1.0531	0.00062061	-0.29161	-0.00017186	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.013	1	11652	11652		33.922	2.3918	1	13724000	+		38802	27924	26649	26702	44337	44337					0.09013337877718186
LEKKKSSSIAS	11	Unmodified	_LEKKKSSSIAS_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3432006835938	2	589.342978	1176.6714	-1.6034	-0.00094497	1.3924	0.00082063	-0.21098	-0.00012434	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0429	1	11258	11258		27.047	2.5281	1	5827400	+		38803	27924	26649	26702	44338	44338					0.09013337877718186
LEKKKSSSIAS	11	Unmodified	_LEKKKSSSIAS_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.342978	1176.6714	-1.9349	-0.0011403	1.7169	0.0010118	-0.21798	-0.00012847	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0183	1	11545	11545		32.751	7.1765	1	15816000	+		38804	27924	26649	26702	44339	44339					0.09013337877718186
LEKKKSSSIAS	11	Unmodified	_LEKKKSSSIAS_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3433227539062	2	589.342978	1176.6714	-1.3212	-0.00077864	1.2043	0.00070977	-0.11685	-6.8865E-05	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0233	1	10997	10997		31.634	2.4642	1	5175100	+		38805	27924	26649	26702	44340	44340					0.09013337877718186
LEKKKSSSIAS	11	Unmodified	_LEKKKSSSIAS_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3431396484375	2	589.342978	1176.6714	-0.33817	-0.0001993	0.073125	4.3095E-05	-0.26504	-0.0001562	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.013	3	10964	10964;11174;11221		33.922	2.3918	1	6196800	+		38806	27924	26649	26702	44341;44342;44343	44341					0.09013337877718186
LEKKKSSSIAS	11	Unmodified	_LEKKKSSSIAS_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3431396484375	2	589.342978	1176.6714	-0.57069	-0.00033633	0.25716	0.00015155	-0.31353	-0.00018478	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	0.94988	4	11496	11258;11376;11460;11496		47.96	15.147	1	17343000	+		38807	27924	26649	26702	44344;44345;44346;44347	44347					0.09013337877718186
LEKKLLQW	8	Unmodified	_LEKKLLQW_					0	0	0			REV__ENSG00000149646|ENST00000373973|CNBD2	REV__ENSG00000149646|ENST00000373973|CNBD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3229370117188	2	529.32386	1056.63317	-0.46799	-0.00024772	2.8537	0.0015105	2.3857	0.0012628	529.3255952686671	36.701	0.16302	36.485	36.368	36.531	-0.21661					5	3	2	0	0	0	0.027866	1	2886	2886		13.775	0	1	46854	+		38808	24693	26650	26703	44348	44348					0.10711496753719985
LEKKLRLC	8	Unmodified	_LEKKLRLC_					0	0	0			REV__ENSG00000182645|ENST00000333254|CCDC172	REV__ENSG00000182645|ENST00000333254|CCDC172	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2582702636719	2	501.810062	1001.60557	-0.27193	-0.00013646	-3.4106	-0.0017115	-3.6825	-0.0018479	501.808270325099	23.882	0.75654	23.703	23.201	23.958	-0.17989					29	17	3	0	0	0	0.027866	1	1009	1009		15.642	0	1	192560	+		38809	27500	26651	26704	44349	44349					0.10483270221823204
LEKKPNSI	8	Unmodified	_LEKKPNSI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7765808105469	2	464.776742	927.538931	-0.98642	-0.00045847	0.86197	0.00040062	-0.12445	-5.7843E-05	464.7770221223335	80.106	0.58641	79.954	79.673	80.259	-0.15168					23	13	2	0	0	0	0.845	1	9919	9919		55.504	0	1	654400			38810	6595	26652	26705	44350	44350					0.07226357931563143
LEKKRLCFP	9	Unmodified	_LEKKRLCFP_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3291015625	2	567.328619	1132.64269	-0.4315	-0.0002448	2.1807	0.0012372	1.7492	0.00099239	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	0.85329	1	11670	11670		35.618	5.1146	1	13648000			38811	1059	26653	26706	44351	44351					0.08166941767581193
LEKKRLCFP	9	Unmodified	_LEKKRLCFP_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3300170898438	2	567.328619	1132.64269	-1.316	-0.00074659	3.6389	0.0020645	2.3229	0.0013179	567.3305774108686	93.251	0.61166	93.111	92.829	93.441	-0.13995					35	13	3	0	0	0	0.67687	1	11495	11495		47.657	4.7931	1	839360			38812	1059	26653	26706	44352	44352					0.08166941767581193
LEKKRLCFP	9	Unmodified	_LEKKRLCFP_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3291625976562	2	567.328619	1132.64269	0.22871	0.00012975	1.4675	0.00083253	1.6962	0.00096228	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.87448	1	11330	11330		34.173	1.3601	1	18337000			38813	1059	26653	26706	44353	44353					0.08166941767581193
LEKLARMIP	9	Unmodified	_LEKLARMIP_					0	0	0			REV__ENST00000538250.5_1_12:123647559-123649972:-|nuORF	REV__ENST00000538250.5_1_12:123647559-123649972:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2471313476562	2	535.823169	1069.63179	-0.81892	-0.00043879	1.0078	0.00054002	0.18891	0.00010122	536.3258936421515	73.493	0.23254	73.228	73.099	73.331	-0.26479					7	5	2	0	0	0	0.02435	1	8657	8657		51.335	0	1	117760	+		38814	20170	26654	26707	44354	44354					0.09975539393303734
LEKLHKDF	8	Unmodified	_LEKLHKDF_					0	0	0			REV__ENST00000540952.5_1_22:38982050-39003412:-|nuORF	REV__ENST00000540952.5_1_22:38982050-39003412:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2877197265625	2	515.290017	1028.56548	-0.42029	-0.00021657	-3.452	-0.0017788	-3.8723	-0.0019954	515.2883002243813	24.828	0.64648	24.613	24.296	24.943	-0.2151					33	14	3	0	0	0	0.56592	2	1122	1122;1134		79.451	5.4806	1	1728000	+		38815	27712	26655	26708	44355;44356	44355					0.05234046822897653
LEKLIKDDI	9	Unmodified	_LEKLIKDDI_					0	0	0		ENST00000530079.5_1_16:70030360-70072929:-|nuORF;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000570001.5_1_16:15069056-15125764:+|nuORF;nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1	ENST00000530079.5_1_16:70030360-70072929:-|nuORF	ENST00000530079.5_1_16:70030360-70072929:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8198852539062	2	543.823889	1085.63323	-0.91122	-0.00049554	-3.4684	-0.0018862	-4.3797	-0.0023818	543.8204033181283	47.63	2.1834	47.63	47.216	49.399	0					176	63	6	0	0	0	0.45795	1	4775	4775		62.107	3.3255	1	22379000			38816	16221	26656	26709	44357	44357					0.09383451963026346
LEKLIKDDI	9	Unmodified	_LEKLIKDDI_					0	0	0		ENST00000530079.5_1_16:70030360-70072929:-|nuORF;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000570001.5_1_16:15069056-15125764:+|nuORF;nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1	ENST00000530079.5_1_16:70030360-70072929:-|nuORF	ENST00000530079.5_1_16:70030360-70072929:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8200073242188	2	543.823889	1085.63323	-1.5584	-0.00084752	-3.0515	-0.0016595	-4.6099	-0.002507	543.8206942234357	47.55	2.311	47.609	47.214	49.525	0.059097					178	65	6	0	0	0	0.45795	1	4706	4706		62.107	3.3255	1	25751000			38817	16221	26656	26709	44358	44358					0.09383451963026346
LEKLILTEM	9	Unmodified	_LEKLILTEM_					0	0	0			REV__ENSG00000157456|ENST00000288207|CCNB2	REV__ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3162231445312	2	545.314843	1088.61513	0.47689	0.00026006	2.2952	0.0012516	2.7721	0.0015116	545.315895622085	20.721	0.64082	20.526	20.236	20.877	-0.19577					35	12	4	0	0	0	0.43973	1	570	570		63.306	4.5243	1	270750	+		38818	25132	26657	26710	44359	44359					0.07436993716692086
LEKLILTEM	9	Unmodified	_LEKLILTEM_					0	0	0			REV__ENSG00000157456|ENST00000288207|CCNB2	REV__ENSG00000157456|ENST00000288207|CCNB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.314843	1088.61513	-0.1661	-9.0579E-05	2.6495	0.0014448	2.4834	0.0013542	545.3160896783537	20.639	0.68412	20.471	20.147	20.832	-0.16774	-0.039876	-8.1807E-05	NaN	63.306	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346880	+		38819	25132	26657	26710							0.07436993716692086
LEKLILTEM	9	Unmodified	_LEKLILTEM_					0	0	0			REV__ENSG00000157456|ENST00000288207|CCNB2	REV__ENSG00000157456|ENST00000288207|CCNB2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	545.314843	1088.61513	0.47689	0.00026006	2.2952	0.0012516	2.7721	0.0015116	545.315895622085	20.721	0.64082	20.526	20.236	20.877	-0.19577	0.01489	-0.00046827	NaN	63.306	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270750	+		38820	25132	26657	26710							0.07436993716692086
LEKLKIITY	9	Unmodified	_LEKLKIITY_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.797607421875	2	560.85245	1119.69035	-0.73143	-0.00041022	0.49298	0.00027649	-0.23845	-0.00013373	560.852401833607	55.114	0.38851	54.968	54.8	55.188	-0.14609					20	10	3	0	0	0	0.024292	1	5922	5922		49.442	12.282	1	154540			38821	4185	26658	26711	44360	44360					0.13528919239411152
LEKLKIITY	9	Unmodified	_LEKLKIITY_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7971801757812	2	560.85245	1119.69035	-0.15258	-8.5576E-05	-0.52598	-0.000295	-0.67856	-0.00038057	560.8521374719221	55.257	0.43471	55.026	54.821	55.255	-0.23087					24	12	3	0	0	0	0.023635	1	5928	5928		39.253	2.0937	1	236380			38822	4185	26658	26711	44361	44361					0.13528919239411152
LEKLKIITY	9	Unmodified	_LEKLKIITY_					0	0	0		nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	nc|ENSG00000126226|Q5JVF3-2|PCID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7973022460938	2	560.85245	1119.69035	-0.22332	-0.00012525	-0.18506	-0.00010379	-0.40838	-0.00022904	560.8522311341166	55.227	0.44643	55.021	54.831	55.277	-0.20613					19	12	2	0	0	0	0.024021	1	5932	5932		40.778	0	1	241620			38823	4185	26658	26711	44362	44362					0.13528919239411152
LEKLKLLGAF	10	Unmodified	_LEKLKLLGAF_					0	0	0			REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3297119140625	2	566.360442	1130.70633	-1.5738	-0.00089136	1.4279	0.00080873	-0.14589	-8.2624E-05	566.36132960021	90.434	0.87285	90.434	90.015	90.887	0					52	20	3	0	0	0	0.03519	1	11492	11492		24.519	0	1	294870	+		38824	27004	26659	26712	44363	44363					0.1462062547630012
LEKLKNQN	8	Unmodified	_LEKLKNQN_					0	0	0		nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-5|WAC;ENST00000345541.6_1_10:28905090-28908532:+|nuORF	nc|ENSG00000095787|Q9BTA9-2|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.78497314453125	2	493.785099	985.555644	-0.16765	-8.2781E-05	-0.49274	-0.00024331	-0.66039	-0.00032609	493.78483325201876	27.471	1.4147	27.315	26.503	27.918	-0.15664					77	33	5	0	0	0	0.71833	1	1503	1503		65.803	0	1	4793900			38825	2038	26660	26713	44364	44364					0.06228858817519267
LEKLMVFGIFL	11	Unmodified	_LEKLMVFGIFL_					0	0	0		nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.25689697265625	3	437.257799	1308.75157	1.1887	0.00051975	-2.1188	-0.00092646	-0.93013	-0.00040671	437.2568354988285	97.354	2.8643	97.354	96.484	99.348	-3.8147E-05					200	65	5	0	0	0	1.0281	1	12419	12419		30.569	2.9249	1	1114100			38826	7973	26661	26714	44365	44365					0.10954107947213743
LEKLQASGDA	10	Unmodified	_LEKLQASGDA_					0	0	0		ENST00000582147.1_1_18:334691-500598:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:334691-500598:-|nuORF	ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2695922851562	2	516.272021	1030.52949	-0.82751	-0.00042722	-4.1424	-0.0021386	-4.9699	-0.0025658	516.2693763016872	60.553	1.0461	60.377	60.076	61.122	-0.1761					66	25	3	0	0	0	0.88896	1	6764	6764		54.776	1.4249	1	2479700			38827	6657	26662	26715	44366	44366					0.01544544855391905
LEKLQLML	8	Unmodified	_LEKLQLML_					0	0	0		ENST00000560964.1_1_15:83486673-83495202:+|nuORF;ENSG00000156232|ENST00000286760|WHAMM	ENST00000560964.1_1_15:83486673-83495202:+|nuORF	ENST00000560964.1_1_15:83486673-83495202:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.3008117675781	2	494.298996	986.583439	0.83498	0.00041273	2.7667	0.0013676	3.6017	0.0017803	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	1.0133	1	12012	12012		35.201	1.6851	1	37582000			38828	6517	26663	26716	44367	44367					0.08961045753392227
LEKLRAGL	8	Unmodified	_LEKLRAGL_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.287353515625	2	450.287277	898.560001	0.27401	0.00012338	-0.36522	-0.00016445	-0.09121	-4.1071E-05	450.2870038196939	37.148	1.0999	36.939	36.445	37.545	-0.2092					77	27	4	0	0	0	0.39824	1	2945	2945		97.473	6.696	1	2968300	+		38829	23174	26664	26717	44368	44368					0.10666368031081674
LEKLVKEDNL	10	Unmodified	_LEKLVKEDNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.8858947753906	3	400.899328	1199.67615	0.24113	9.667E-05	-1.4791	-0.00059295	-1.2379	-0.00049628	400.8985676052813	54.894	0.52394	54.747	54.533	55.057	-0.14609					36	13	3	0	0	0	0.03519	1	5879	5879		20.837	0	1	930540			38830	19003;8399	26665	26718	44369	44369					0.0843022202047905
LEKMMEKKGT	10	Unmodified	_LEKMMEKKGT_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	597.8562622070312	2	597.814684	1193.61482	-1.8471	-0.0011042	-3.0899	-0.0018472	-4.937	-0.0029514	597.8124466905979	92.465	0.66525	92.465	92.216	92.881	0					29	15	3	0	0	0	0.03519	1	11728	11728		41.427	9.8968	1	111910			38831	4109	26666	26719	44370	44370					0.02575250725180922
LEKMNVKI	8	Unmodified	_LEKMNVKI_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC;LRPPRC|p.L682Qfs*6|1|0.33|ENSG00000138095|chr2:43947291-43947291|A/-|frameshift_variant	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79083251953125	2	487.788795	973.563038	0.29152	0.0001422	3.4181	0.0016673	3.7097	0.0018095	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.89627	1	10439	10439		51.335	5.3835	1	2091900			38832	5204	26667	26720	44371	44371					0.0751987509358969
LEKNQITAL	9	Unmodified	_LEKNQITAL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000545081.5_1_16:57093337-57116437:+|nuORF;ENST00000543049.1_1_16:57114926-57116437:+|nuORF;ENST00000543103.1_1_16:57115217-57116437:+|nuORF;ENST00000538453.5_1_16:57103718-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2993774414062	2	515.300581	1028.58661	-1.604	-0.00082652	-0.56436	-0.00029081	-2.1683	-0.0011173	515.3001094362164	62.224	0.61223	62.287	61.912	62.524	0.062767					28	16	2	0	0	0	0.28753	1	7170	7170		77.318	0.54344	1	5638500			38833	5448	26668	26721	44372	44372					0.07346012131756652
LEKNQREL	8	Unmodified	_LEKNQREL_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__nc|ENSG00000133026|P35580|MYH10	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2876586914062	2	515.288005	1028.56146	-0.12585	-6.4851E-05	0.2833	0.00014598	0.15744	8.1128E-05	515.2881512719158	24.622	0.65187	24.447	24.169	24.821	-0.17484					33	14	3	0	0	0	0.6248	1	1084	1084		73.975	0	1	1637900	+		38834	21094;23338	26669	26722	44373	44373					0.04831957329201941
LEKNYRTLN	9	Unmodified	_LEKNYRTLN_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8431396484375	2	575.814387	1149.61422	-1.3153	-0.00075737	2.7546	0.0015861	1.4393	0.00082874	575.8150426817356	91.398	0.21329	91.249	91.14	91.353	-0.1487					5	4	2	0	0	0	0.024418	1	11204	11204		45.972	0	1	32858	+		38835	36556	26670	26723	44374	44374					0.04539915392001603
LEKPGGRAR	9	Unmodified	_LEKPGGRAR_					0	0	0		ENST00000246024.6_1_20:8000232-8000430:-|nuORF	ENST00000246024.6_1_20:8000232-8000430:-|nuORF	ENST00000246024.6_1_20:8000232-8000430:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.3034973144531	2	492.290882	982.567212	-0.34807	-0.00017135	-1.5261	-0.00075127	-1.8741	-0.00092262	492.29001857547775	31.854	0.12018	31.865	31.782	31.902	0.011799					4	2	2	0	0	0	0.023454	1	2143	2143		62.107	17.991	1	22092			38836	11317	26671	26724	44375	44375					0.07523100631522084
LEKPKYRCP	9	Unmodified	_LEKPKYRCP_					0	0	0		nc|ENSG00000273611|Q15649-2|ZNHIT3;ENSG00000273611|ENST00000617429|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3298950195312	2	567.310426	1132.6063	-0.5729	-0.00032501	0.18274	0.00010367	-0.39016	-0.00022134	567.3101274332015	90.396	0.17109	90.409	90.323	90.494	0.013435					5	3	2	0	0	0	0.024374	1	11345	11345		32.812	1.2826	1	42460			38837	11021	26672	26725	44376	44376					0.04530064870868955
LEKPPQSLLIG	11	Unmodified	_LEKPPQSLLIG_					0	0	0			REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8565673828125	2	597.858264	1193.70197	-0.39778	-0.00023782	-2.4142	-0.0014433	-2.8119	-0.0016811	598.3585984414767	90.781	2.8287	90.792	88.918	91.747	0.011276					183	67	3	0	0	0	0.98542	1	11389	11389		40.058	2.2467	1	2105300	+		38838	35695	26673	26726	44377	44377					0.11287116262769814
LEKPPQSLLIG	11	Unmodified	_LEKPPQSLLIG_					0	0	0			REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.85595703125	2	597.858264	1193.70197	-0.69485	-0.00041542	-2.7318	-0.0016332	-3.4267	-0.0020487	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.9728	1	11772	11772		42.864	8.6917	1	4386000	+		38839	35695	26673	26726	44378	44378					0.11287116262769814
LEKPPQSLLIG	11	Unmodified	_LEKPPQSLLIG_					0	0	0			REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8565063476562	2	597.858264	1193.70197	-0.56214	-0.00033608	-3.0322	-0.0018128	-3.5944	-0.0021489	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	0.98542	1	11493	11493		40.058	2.2467	1	5880700	+		38840	35695	26673	26726	44379	44379					0.11287116262769814
LEKPTKFIN	9	Unmodified	_LEKPTKFIN_					0	0	0			REV__ENSG00000237330|ENST00000453464|RNF223	REV__ENSG00000237330|ENST00000453464|RNF223	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3169555664062	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.69446	1	11174	11174		46.457	9.2977	1	11705000	+		38841	28940	26674	26727	44380	44380					0.08222889028502323
LEKPTKFIN	9	Unmodified	_LEKPTKFIN_					0	0	0			REV__ENSG00000237330|ENST00000453464|RNF223	REV__ENSG00000237330|ENST00000453464|RNF223	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3173828125	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.89441	1	11065	11065		32.812	1.2826	1	3438300	+		38842	28940	26674	26727	44381	44381					0.08222889028502323
LEKPTKFIN	9	Unmodified	_LEKPTKFIN_					0	0	0			REV__ENSG00000237330|ENST00000453464|RNF223	REV__ENSG00000237330|ENST00000453464|RNF223	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3169555664062	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.93097	1	11005	11005		30.318	1.1477	1	17068000	+		38843	28940	26674	26727	44382	44382					0.08222889028502323
LEKQELLAA	9	Unmodified	_LEKQELLAA_					0	0	0			REV__nc|ENSG00000125450|Q9BW27-2|NUP85	REV__nc|ENSG00000125450|Q9BW27-2|NUP85	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.30810546875	2	507.795132	1013.57571	-0.92146	-0.00046791	-0.39091	-0.0001985	-1.3124	-0.00066642	507.79502008773204	43.275	0.36305	43.049	42.912	43.275	-0.22597					12	9	2	0	0	0	0.024209	1	3975	3975		66.429	6.311	1	93217	+		38844	22818	26675	26728	44383	44383					0.06946609757483202
LEKQFEEE	8	Unmodified	_LEKQFEEE_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.252685546875	2	526.250754	1050.48696	4.1785	0.002199	-1.0914	-0.00057437	3.0871	0.0016246	526.2500624710411	17.795	0.29746	17.545	17.371	17.669	-0.25049					10	5	3	0	0	0	1.0338	1	205	205		31.955	1.4512	1	33249	+		38845	21051	26676	26729	44384	44384					-0.03626850272848969
LEKQFRLI	8	Unmodified	_LEKQFRLI_					0	0	0			REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	REV__ENST00000599510.1_1_19:49299609-49300643:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.821044921875	2	523.821484	1045.62842	-1.0109	-0.00052951	0.13312	6.9732E-05	-0.87774	-0.00045978	523.8215921563113	48.547	1.6941	48.271	47.63	49.324	-0.27598					132	45	4	0	0	0	0.78609	1	4833	4833		60.294	0	1	19150000	+		38846	21537	26677	26730	44385	44385					0.1074261261094307
LEKQFTDLK	9	Unmodified	_LEKQFTDLK_					0	0	0		ENST00000547420.5_1_14:36300617-36327811:+|nuORF;ENST00000548758.1_1_14:36295674-36335014:+|nuORF;nc|ENSG00000100916|Q5PSV4-2|BRMS1L;ENSG00000100916|ENST00000216807|BRMS1L	ENST00000547420.5_1_14:36300617-36327811:+|nuORF	ENST00000547420.5_1_14:36300617-36327811:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.3140258789062	2	561.313689	1120.61282	0.62788	0.00035244	-2.7579	-0.001548	-2.13	-0.0011956	561.3116856740809	70.822	0.88591	70.529	70.07	70.956	-0.29292					47	25	3	0	0	0	0.85329	1	8554	8554		35.618	0	1	919460			38847	2260	26678	26731	44386	44386					0.05734281303239186
LEKQIFAIQ	9	Unmodified	_LEKQIFAIQ_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	0.84115	1	10677	10677		36.447	0.82846	1	5204600			38848	2903	26679	26732	44387	44387					0.08222889028479585
LEKQIGWL	8	Unmodified	_LEKQIGWL_					0	0	0			REV__ENST00000397561.3_1_9:14921337-14921451:-|nuORF	REV__ENST00000397561.3_1_9:14921337-14921451:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7848815917969	2	493.78711	985.559667	-0.58403	-0.00028839	-4.3111	-0.0021287	-4.8951	-0.0024171	493.78497956063717	27.472	1.4359	27.23	26.488	27.924	-0.24217					79	33	6	0	0	0	0.75307	1	1542	1542		62.978	2.0065	1	5263700	+		38849	23441	26680	26733	44388	44388					0.06630948311226348
LEKQKEEIK	9	Unmodified	_LEKQKEEIK_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.8504638671875	2	572.832246	1143.64994	-0.028562	-1.6361E-05	2.8199	0.0016153	2.7913	0.001599	572.8330240487763	18.094	0.19796	17.887	17.813	18.011	-0.20669					6	3	2	0	0	0	0.014325	1	268	268		167.23	2.7737	1	21878	+		38850	21710	26681	26734	44389	44389					0.08385952848993838
LEKQKPQSMI	10	Unmodified	_LEKQKPQSMI_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	600.75439453125	2	601.334098	1200.65364	-0.74167	-0.00044599	-1.6061	-0.00096581	-2.3478	-0.0014118	601.333058862224	58.769	0.83775	58.769	58.457	59.295	0					32	22	2	0	0	0	0.03519	1	6687	6687		67.494	14.557	1	511600	+		38851	23659	26682	26735	44390	44390					0.06134299351219852
LEKQKPQSMI	10	Unmodified	_LEKQKPQSMI_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	601.334098	1200.65364	-0.66533	-0.00040009	-1.8666	-0.0011225	-2.532	-0.0015226	601.3329767752787	58.955	0.6778	58.767	58.546	59.224	-0.18795	0.02206	0.00061777	NaN	67.494	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267510	+		38852	23659	26682	26735							0.06134299351219852
LEKQKPQSMI	10	Unmodified	_LEKQKPQSMI_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	601.334098	1200.65364	-0.19905	-0.0001197	-2.433	-0.0014631	-2.6321	-0.0015828	601.3325108798452	58.884	0.64662	58.703	58.426	59.072	-0.18134	-0.041862	-6.3434E-05	NaN	67.494	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292630	+		38853	23659	26682	26735							0.06134299351219852
LEKQKPQSMI	10	Unmodified	_LEKQKPQSMI_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	601.334098	1200.65364	0.44835	0.00026961	-3.1499	-0.0018942	-2.7016	-0.0016246	601.3320410648302	59.014	0.67458	58.772	58.543	59.218	-0.24166	0.027505	-0.00092561	NaN	67.494	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338210	+		38854	23659	26682	26735							0.06134299351219852
LEKQKTEL	8	Unmodified	_LEKQKTEL_					0	0	0			REV__ENST00000340533.8_2_18:71920602-71920758:-|nuORF	REV__ENST00000340533.8_2_18:71920602-71920758:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7873840332031	2	494.787307	987.560061	-0.94361	-0.00046689	0.42571	0.00021063	-0.5179	-0.00025625	494.7874861374929	26.019	1.0695	25.783	25.425	26.495	-0.23603					62	28	4	0	0	0	0.56592	2	1301	1288;1301		79.451	0	1	5868400	+		38855	30617	26683	26736	44391;44392	44392					0.06578323240421469
LEKQKTEL	8	Unmodified	_LEKQKTEL_					0	0	0			REV__ENST00000340533.8_2_18:71920602-71920758:-|nuORF	REV__ENST00000340533.8_2_18:71920602-71920758:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7870788574219	2	494.787307	987.560061	-0.17327	-8.5733E-05	-0.15362	-7.6009E-05	-0.32689	-0.00016174	494.7871661253784	25.771	0.8621	25.6	25.288	26.15	-0.17078					57	23	4	0	0	0	0.56592	1	1246	1246		79.451	8.1553	1	4757700	+		38856	30617	26683	26736	44393	44393					0.06578323240421469
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		ENSG00000187398|ENST00000336930|LUZP2;nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3300170898438	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.70156	1	11736	11736		45.972	5.1941	1	14057000			38857	9624;14500	26684	26737	44394	44394					0.0881915819995811
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		ENSG00000187398|ENST00000336930|LUZP2;nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.32958984375	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.6238	2	11128	11040;11128		51.193	6.8155	1	4134200			38858	9624;14500	26684	26737	44395;44396	44396					0.0881915819995811
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		ENSG00000187398|ENST00000336930|LUZP2;nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.330322265625	2	567.331882	1132.64921	-0.25865	-0.00014674	-2.6582	-0.0015081	-2.9169	-0.0016548	567.3302396632416	88.151	1.3013	87.981	87.036	88.338	-0.17053					97	31	4	0	0	0	0.82115	1	10715	10715		37.812	1.3648	1	1743200			38859	9624;14500	26684	26737	44397	44397					0.0881915819995811
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		ENSG00000187398|ENST00000336930|LUZP2;nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3305053710938	2	567.331882	1132.64921	-1.316	-0.00074659	-2.1119	-0.0011981	-3.4278	-0.0019447	567.3305774108686	93.251	0.61166	93.111	92.829	93.441	-0.13995					35	13	3	0	0	0	0.82115	1	11457	11457		37.812	8.6415	1	839360			38860	9624;14500	26684	26737	44398	44398					0.0881915819995811
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		ENSG00000187398|ENST00000336930|LUZP2;nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3295288085938	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	0.82115	2	11370	11370;11514		37.812	3.8899	1	19210000			38861	9624;14500	26684	26737	44399;44400	44399					0.0881915819995811
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		ENSG00000187398|ENST00000336930|LUZP2;nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2;ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENSG00000187398|ENST00000336930|LUZP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3301391601562	2	567.331882	1132.64921	-0.025912	-1.4701E-05	-3.6495	-0.0020705	-3.6754	-0.0020852	567.3297015547128	93.386	0.56843	93.242	92.914	93.483	-0.1441					23	12	2	0	0	0	0.56934	1	11493	11493		54.776	16.023	1	914870			38862	9624;14500	26684	26737	44401	44401					0.0881915819995811
LEKQLQSR	8	Unmodified	_LEKQLQSR_					0	0	0			REV__ENST00000581175.5_1_17:63133658-63206777:+|nuORF	REV__ENST00000581175.5_1_17:63133658-63206777:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	501.290548	1000.56654	0.11849	5.9399E-05	-0.49525	-0.00024827	-0.37676	-0.00018887	501.29033025785617	24.141	1.4528	23.926	23.14	24.592	-0.2151					71	33	4	0	0	0	0.80469	1	1034	1034		58.782	0	1	572810	+		38863	35528	26685	26738	44402	44402					0.06628261191804086
LEKQLTTV	8	Unmodified	_LEKQLTTV_					0	0	0			REV__ENSG00000170275|ENST00000320954|CRTAP	REV__ENSG00000170275|ENST00000320954|CRTAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7845153808594	2	466.276575	930.538597	0.44047	0.00020538	-0.45154	-0.00021054	-0.011062	-5.158E-06	466.2758566586536	44.484	0.30623	44.521	44.443	44.749	0.0369					21	8	3	0	0	0	0.027866	1	4182	4182		20.947	3.582	1	572340	+		38864	26453	26686	26739	44403	44403					0.07054938211706485
LEKQRLLDA	9	Unmodified	_LEKQRLLDA_					0	0	0			REV__nc|ENSG00000187634|Q96NU1-1|SAMD11	REV__nc|ENSG00000187634|Q96NU1-1|SAMD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7793579101562	2	543.319306	1084.62406	-0.67544	-0.00036698	0.15874	8.6244E-05	-0.5167	-0.00028073	543.3195708821461	35.194	0.38658	34.982	34.847	35.233	-0.21246					13	9	2	0	0	0	0.024506	1	2675	2675		23.042	0	1	174100	+		38865	27953	26687	26740	44404	44404					0.08513103397399391
LEKQTRILP	9	Unmodified	_LEKQTRILP_					0	0	0			REV__ENSG00000129484|ENST00000429687|PARP2	REV__ENSG00000129484|ENST00000429687|PARP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3372192382812	2	549.337498	1096.66044	-0.31171	-0.00017123	-0.31701	-0.00017415	-0.62873	-0.00034538	549.3372811239649	68.616	0.92297	68.324	67.974	68.897	-0.29267					82	23	5	0	0	0	0.43973	1	8235	8235		63.306	1.1989	1	7325400	+		38866	23049	26688	26741	44405	44405					0.11597980294095578
LEKRARNGE	9	Unmodified	_LEKRARNGE_					0	0	0			REV__nc|ENSG00000131650|Q8NCW0-2|KREMEN2	REV__nc|ENSG00000131650|Q8NCW0-2|KREMEN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.7984008789062	2	536.796529	1071.5785	-0.29862	-0.0001603	3.9683	0.0021301	3.6696	0.0019698	536.79856410697	50.269	1.4543	49.989	49.547	51.001	-0.27977					73	38	3	0	0	0	0.53979	1	5100	5100		56.721	0.28726	1	3895700	+		38867	36658	26689	26742	44406	44406					0.045578779349852994
LEKRHWLLE	9	Unmodified	_LEKRHWLLE_					0	0	0		ENST00000430592.1_1_1:174090830-174124829:-|nuORF	ENST00000430592.1_1_1:174090830-174124829:-|nuORF	ENST00000430592.1_1_1:174090830-174124829:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2474670410156	3	408.568024	1222.68224	1.115	0.00045554	-0.62955	-0.00025721	0.48541	0.00019832	408.5676609382987	37.377	0.71007	37.41	37.112	37.822	0.032269					31	18	2	0	0	0	0.024438	1	3017	3017		22.58	3.4761	1	117310			38868	14176	26690	26743	44407	44407					0.07980785042673233
LEKRIERRLRE	11	Unmodified	_LEKRIERRLRE_					0	0	0			REV__nc|ENSG00000123143|Q16512-3|PKN1	REV__nc|ENSG00000123143|Q16512-3|PKN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.9708557128906	3	499.970591	1496.88994	1.3724	0.00068618	-1.4585	-0.00072923	-0.086092	-4.3043E-05	499.96973809994097	17.286	0.35154	17.132	16.957	17.308	-0.15403					16	6	4	0	0	0	1.0996	1	169	169		11.455	2.2428	1	122550	+		38869	22680	26691	26744	44408	44408					0.161373672398895
LEKRIERRLRE	11	Unmodified	_LEKRIERRLRE_					0	0	0			REV__nc|ENSG00000123143|Q16512-3|PKN1	REV__nc|ENSG00000123143|Q16512-3|PKN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	499.970591	1496.88994	3.6263	0.0018131	-3.959	-0.0019794	-0.33266	-0.00016632	499.96862539308654	17.099	0.17334	17.099	17.028	17.201	0	0.018714	-0.003458	NaN	11.455	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15448	+		38870	22680	26691	26744							0.161373672398895
LEKRIERRLRE	11	Unmodified	_LEKRIERRLRE_					0	0	0			REV__nc|ENSG00000123143|Q16512-3|PKN1	REV__nc|ENSG00000123143|Q16512-3|PKN1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	499.970591	1496.88994	1.3724	0.00068618	-1.4585	-0.00072923	-0.086092	-4.3043E-05	499.96973809994097	17.286	0.35154	17.132	16.957	17.308	-0.15403	0.051437	0.00029246	NaN	11.455	16	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122550	+		38871	22680	26691	26744							0.161373672398895
LEKRIERRLRE	11	Unmodified	_LEKRIERRLRE_					0	0	0			REV__nc|ENSG00000123143|Q16512-3|PKN1	REV__nc|ENSG00000123143|Q16512-3|PKN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	499.970591	1496.88994	4.5647	0.0022822	-5.7057	-0.0028527	-1.141	-0.00057047	499.9678311224445	17.302	0.19992	17.051	16.928	17.128	-0.25049	-0.029257	-0.0060779	NaN	11.455	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23449	+		38872	22680	26691	26744							0.161373672398895
LEKRKMLL	8	Oxidation (M)	_LEKRKM(Oxidation (M))LL_		LEKRKM(1)LL		LEKRKM(91)LL	0	0	1			REV__ENST00000558632.1_1_15:45722994-45723285:+|nuORF	REV__ENST00000558632.1_1_15:45722994-45723285:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8209228515625	2	523.823169	1045.63179	-1.0109	-0.00052951	-3.0844	-0.0016157	-4.0952	-0.0021452	523.8215921563113	48.547	1.6941	48.271	47.63	49.324	-0.27598					132	45	4	0	0	0	0.44658	1	4786	4786		90.777	8.4716	1	19150000	+		38873	26081	26692	26745	44409	44409		774			0.11079539393313098
LEKRKMLL	8	Oxidation (M)	_LEKRKM(Oxidation (M))LL_		LEKRKM(1)LL		LEKRKM(130)LL	0	0	1			REV__ENST00000558632.1_1_15:45722994-45723285:+|nuORF	REV__ENST00000558632.1_1_15:45722994-45723285:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.8213500976562	2	523.823169	1045.63179	0.073224	3.8356E-05	-4.1983	-0.0021992	-4.1251	-0.0021608	523.821047079256	48.33	1.7007	48.143	47.561	49.261	-0.18684					145	45	4	0	0	0	0.26064	1	4799	4799		128.86	9.3043	1	16926000	+		38874	26081	26692	26745	44410	44410		774			0.11079539393313098
LEKRKTRKHH	10	Unmodified	_LEKRKTRKHH_					0	0	0			REV__ENST00000463131.5_1_2:204131396-204143377:+|nuORF	REV__ENST00000463131.5_1_2:204131396-204143377:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.25115966796875	3	444.937221	1331.78984	-1.1573	-0.00051491	-3.2399	-0.0014416	-4.3972	-0.0019565	445.26973567859835	29.169	0.25952	29.169	29.073	29.333	0					10	6	2	0	0	0	0.03519	1	1787	1787		32.751	7.6245	1	307820	+		38875	32924	26693	26746	44411	44411					0.13721174696752314
LEKSEVTKR	9	Unmodified	_LEKSEVTKR_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3162841796875	2	545.316763	1088.61897	-0.40471	-0.0002207	0.11379	6.2053E-05	-0.29092	-0.00015864	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.64897	1	10931	10931		49.536	1.8787	1	3438300			38876	9789	26694	26747	44412	44412					0.07820799534783873
LEKSKQRSIL	10	Unmodified	_LEKSKQRSIL_					0	0	0		ENST00000302550.15_1_1:244868978-244869173:+|nuORF	ENST00000302550.15_1_1:244868978-244869173:+|nuORF	ENST00000302550.15_1_1:244868978-244869173:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8874816894531	3	401.24695	1200.71902	0.16416	6.587E-05	-0.21878	-8.7785E-05	-0.054615	-2.1914E-05	401.2468483132013	30.626	0.29085	30.626	30.426	30.717	0					10	6	2	0	0	0	0.03519	1	1989	1989		55.084	0	1	36303			38877	11960	26695	26748	44413	44413					0.12669036868578587
LEKSWLPQ	8	Unmodified	_LEKSWLPQ_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS;ENST00000517543.1_1_8:4645208-4645454:+|nuORF;ENST00000429118.1_1_9:94374035-94374428:+|nuORF	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7777099609375	2	500.776742	999.538931	0.43955	0.00022012	3.117	0.0015609	3.5566	0.001781	500.77842559560423	71.958	0.74156	71.67	71.351	72.093	-0.28858					33	19	2	0	0	0	0.027866	1	8699	8699		45.952	0	1	1759300			38878	4276	26696	26749	44414	44414					0.03914357931569157
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3536987304688	2	611.358096	1220.70164	-1.2666	-0.00077434	-2.1002	-0.001284	-3.3668	-0.0020583	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.0017	2	11721	11721;11733		36.447	10.873	1	3820300	+		38879	22314	26697	26750	44415;44416	44415					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3536376953125	2	611.358096	1220.70164	-0.5279	-0.00032273	-2.8308	-0.0017306	-3.3587	-0.0020534	611.3562554984684	92.326	2.2035	92.318	91.16	93.364	-0.0082932					149	52	4	0	0	0	1.013	1	11677	11677		33.922	5.8401	1	3964400	+		38880	22314	26697	26750	44417	44417					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3562622070312	2	611.358096	1220.70164	-0.32068	-0.00019605	-2.8205	-0.0017243	-3.1411	-0.0019204	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.0017	2	12009	11974;12009		36.447	1.2947	1	11218000	+		38881	22314	26697	26750	44418;44419	44419					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.352783203125	2	611.358096	1220.70164	-0.79597	-0.00048662	-2.4967	-0.0015264	-3.2927	-0.002013	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	0.9728	1	11622	11622		42.864	2.0861	1	4189200	+		38882	22314	26697	26750	44420	44420					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3563232421875	2	611.358096	1220.70164	-1.352	-0.00082658	-1.8159	-0.0011102	-3.168	-0.0019368	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.0075	2	11921	11921;11980		35.152	0.97948	1	11699000	+		38883	22314	26697	26750	44421;44422	44421					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3538818359375	2	611.358096	1220.70164	-2.7988	-0.0017111	-0.66999	-0.00040961	-3.4688	-0.0021207	611.3575286656617	92.522	1.7327	92.379	91.617	93.35	-0.14356					150	40	4	0	0	0	0.9728	3	11344	11344;11392;11415		42.864	16.171	1	4645400	+		38884	22314	26697	26750	44423;44424;44425	44423					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3556518554688	2	611.358096	1220.70164	-1.8096	-0.0011063	-1.3459	-0.00082285	-3.1556	-0.0019292	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.0017	3	11551	11551;11648;11731		36.447	5.8401	1	13060000	+		38885	22314	26697	26750	44426;44427;44428	44426					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3549194335938	2	611.358096	1220.70164	-0.19635	-0.00012004	-3.3434	-0.002044	-3.5398	-0.0021641	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.0017	1	11366	11366		36.447	7.2767	1	5237500	+		38886	22314	26697	26750	44429	44429					0.10011696542937898
LEKTKYHP	8	Unmodified	_LEKTKYHP_					0	0	0		ENST00000433206.6_1_17:37077716-37077827:+|nuORF	ENST00000433206.6_1_17:37077716-37077827:+|nuORF	ENST00000433206.6_1_17:37077716-37077827:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.2775573730469	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.51	1	100.34	99.84	100.84	-0.17088								0	0	0	0.73703	1	12459	12459		38.806	5.2906	1				38887	14218	26698	26751	44430	44430					0.043137603058426066
LEKVATGKL	9	Unmodified	_LEKVATGKL_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.8000793457031	2	479.800217	957.585882	0.062654	3.0061E-05	-0.31252	-0.00014995	-0.24986	-0.00011988	479.7999922872413	22.222	0.57683	22.02	21.663	22.24	-0.20198					29	11	4	0	0	0	0.2101	1	742	742		87.696	2.7809	1	414220			38888	2456	26699	26752	44431	44431					0.10539217482721597
LEKVLMAEL	9	Unmodified	_LEKVLMAEL_					0	0	0		ENSG00000162062|ENST00000361837|TEDC2;nc|ENSG00000162062|Q7L2K0-2|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3045654296875	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.70156	1	10994	10994		45.972	3.108	1	11993000			38889	6913	26700	26753	44432	44432					0.06840724545213561
LEKVLMAEL	9	Unmodified	_LEKVLMAEL_					0	0	0		ENSG00000162062|ENST00000361837|TEDC2;nc|ENSG00000162062|Q7L2K0-2|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3040771484375	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.84115	1	10990	10990		36.447	6.129	1	10615000			38890	6913	26700	26753	44433	44433					0.06840724545213561
LEKVLMAEL	9	Unmodified	_LEKVLMAEL_					0	0	0		ENSG00000162062|ENST00000361837|TEDC2;nc|ENSG00000162062|Q7L2K0-2|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3038330078125	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.5973	1	10924	10924		52.937	10.541	1	11897000			38891	6913	26700	26753	44434	44434					0.06840724545213561
LEKVLMAEL	9	Unmodified	_LEKVLMAEL_					0	0	0		ENSG00000162062|ENST00000361837|TEDC2;nc|ENSG00000162062|Q7L2K0-2|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	ENSG00000162062|ENST00000361837|TEDC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3035888671875	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.82115	1	10627	10627		37.812	0.65241	1	14072000			38892	6913	26700	26753	44435	44435					0.06840724545213561
LEKVPRAPTL	10	Unmodified	_LEKVPRAPTL_					0	0	0		ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167;nc|nan|Q5SNV9-3|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3433837890625	2	562.345323	1122.67609	-0.29633	-0.00016664	-3.2662	-0.0018367	-3.5625	-0.0020034	562.3433631418777	89.188	3.1299	89.06	88.322	91.452	-0.12774					179	74	4	0	0	0	1.1295	1	10951	10951		26.063	1.5442	1	795170			38893	10595	26701	26754	44436	44436					0.11966266811123205
LEKVQIDSSA	10	Unmodified	_LEKVQIDSSA_					0	0	0			REV__ENST00000465604.1_1_1:26229981-26231212:-|nuORF	REV__ENST00000465604.1_1_1:26229981-26231212:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3164672851562	2	545.292953	1088.57135	-0.60034	-0.00032736	-4.115	-0.0022439	-4.7153	-0.0025712	545.2888423906868	89.86	0.94072	89.873	89.383	90.323	0.013443					46	22	4	0	0	0	0.03519	1	11231	11231		47.96	19.878	1	370330	+		38894	22366	26702	26755	44437	44437					0.030611005439368455
LEKVRQNVQT	10	Unmodified	_LEKVRQNVQT_					0	0	0			REV__nc|ENSG00000161533|Q15067|ACOX1	REV__nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.88775634765625	3	405.566571	1213.67788	0.12058	4.8902E-05	0.66471	0.00026958	0.78528	0.00031848	405.56693432247977	22.495	0.55292	22.31	22.047	22.6	-0.18539					17	11	2	0	0	0	0.03519	1	825	825		6.001	0	1	142550	+		38895	36840	26703	26756	44438	44438					0.0795927582908007
LEKVVEED	8	Unmodified	_LEKVVEED_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2822265625	2	480.747847	959.481142	0.12741	6.1251E-05	-2.2387	-0.0010763	-2.1113	-0.001015	480.74671417734436	102	0.57272	102	101.73	102.3	0					24	12	3	0	0	0	0.027866	1	13042	13042		21.96	6.3181	1	191670	+		38896	23910	26704	26757	44439	44439					-0.00021948784512915154
LEKWLNDAENL	11	Unmodified	_LEKWLNDAENL_					0	0	0		POU2F1-CNTNAP3|2|fusion;POU2F1-CNTNAP3|3|fusion;POU2F1-CNTNAP3|1|fusion;nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1	POU2F1-CNTNAP3|2|fusion	POU2F1-CNTNAP3|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2607116699219	3	448.897987	1343.67213	-0.036838	-1.6536E-05	-3.8129	-0.0017116	-3.8497	-0.0017281	448.8973025348484	31.479	0.18447	31.238	31.073	31.258	-0.24109					5	4	2	0	0	0	0.024776	1	2078	2078		18.966	0	1	25561			38897	18981	26705	26758	44440	44440					0.014041325267498905
LEKWLNDAENL	11	Unmodified	_LEKWLNDAENL_					0	0	0		POU2F1-CNTNAP3|2|fusion;POU2F1-CNTNAP3|3|fusion;POU2F1-CNTNAP3|1|fusion;nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1	POU2F1-CNTNAP3|2|fusion	POU2F1-CNTNAP3|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	448.897987	1343.67213	-0.31963	-0.00014348	1.9884	0.0008926	1.6688	0.00074912	449.2341356803458	31.331	0.11118	31.178	31.085	31.197	-0.15231	-0.029782	0.0039568	NaN	55.721	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28007			38898	18981	26705	26758							0.014041325267498905
LEKYDPDI	8	Unmodified	_LEKYDPDI_					0	0	0			REV__ENSG00000182676|ENST00000330261|PPP1R27	REV__ENSG00000182676|ENST00000330261|PPP1R27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7183532714844	2	496.75039	991.486227	-0.28398	-0.00014107	-4.3245	-0.0021482	-4.6085	-0.0022893	496.7481066670275	27.756	0.56693	27.756	27.508	28.074	0					36	14	4	0	0	0	0.027866	1	1592	1592		31.53	0	1	684370	+		38899	27503	26706	26759	44441	44441					-0.009856449219000751
LEKYDPDI	8	Unmodified	_LEKYDPDI_					0	0	0			REV__ENSG00000182676|ENST00000330261|PPP1R27	REV__ENSG00000182676|ENST00000330261|PPP1R27	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.75039	991.486227	-0.8025	-0.00039864	-3.7828	-0.0018791	-4.5853	-0.0022777	496.7484074363494	27.261	0.62123	27.343	27.1	27.722	0.081291	-0.30971	0.00027217	NaN	31.53	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671690	+		38900	27503	26706	26759							-0.009856449219000751
LEKYLADLP	9	Unmodified	_LEKYLADLP_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3189086914062	2	531.297507	1060.58046	-1.3335	-0.00070846	-1.5681	-0.00083311	-2.9015	-0.0015416	531.2971017349212	93.598	0.6527	93.458	93.179	93.832	-0.13995					22	14	3	0	0	0	0.024209	1	11528	11528		56.721	0	1	54719			38901	3152	26707	26760	44442	44442					0.05259493900234702
LEKYSEQTEF	10	Unmodified	_LEKYSEQTEF_					0	0	0		ENST00000520201.5_1_8:42129679-42177019:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;ENST00000522785.1_1_8:42176239-42177326:+|nuORF;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENST00000342222.6_1_8:42151073-42188494:+|nuORF	ENST00000520201.5_1_8:42129679-42177019:+|nuORF	ENST00000520201.5_1_8:42129679-42177019:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.1944885253906	3	425.203076	1272.5874	0.22096	9.3951E-05	-2.3255	-0.00098879	-2.1045	-0.00089484	425.2019046530184	34.51	0.86798	34.286	33.997	34.865	-0.22412					51	21	4	0	0	0	0.86089	1	2556	2556		56.632	14.294	1	1575800			38902	2564	26708	26761	44443	44443					-0.037992380098330614
LELAKIID	8	Unmodified	_LELAKIID_					0	0	0			REV__nc|ENSG00000145833|Q7L014|DDX46	REV__nc|ENSG00000145833|Q7L014|DDX46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.264404296875	2	457.781493	913.548434	0.026688	1.2217E-05	0.24494	0.00011213	0.27163	0.00012435	457.781407054825	79.686	1.2214	79.686	79.364	80.585	0					58	28	3	0	0	0	0.027866	1	9986	9986		15.642	3.435	1	1065500	+		38903	24436	26709	26762	44444	44444					0.08820126217108282
LELALSITR	9	Unmodified	_LELALSITR_					0	0	0		ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2691955566406	2	508.310949	1014.60735	-0.89049	-0.00045265	0.1978	0.00010055	-0.69269	-0.0003521	508.3109967603367	44.728	0.46116	44.478	44.25	44.711	-0.25011					27	11	3	0	0	0	0.024418	1	4206	4206		37.812	0	1	526660			38904	10341	26710	26763	44445	44445					0.10062602511425212
LELALSITR	9	Unmodified	_LELALSITR_					0	0	0		ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.310949	1014.60735	-1.1289	-0.00057382	0.33387	0.00016971	-0.795	-0.00040411	508.3109720452811	44.46	0.67968	44.46	44.183	44.862	0	-0.014334	0.00011135	NaN	37.812	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2423500			38905	10341	26710	26763							0.10062602511425212
LELALSITR	9	Unmodified	_LELALSITR_					0	0	0		ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.310949	1014.60735	-1.2854	-0.00065337	0.5428	0.00027591	-0.74258	-0.00037746	508.31108992232305	44.588	0.75132	44.439	44.222	44.974	-0.1488	-0.034841	0.00032375	NaN	37.812	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2391100			38906	10341	26710	26763							0.10062602511425212
LELAQLLAM	9	Unmodified	_LELAQLLAM_					0	0	0			REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1	REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2904968261719	2	501.288628	1000.5627	0.41475	0.00020791	3.1647	0.0015864	3.5794	0.0017943	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	0.90698	1	10163	10163		31.955	2.1133	1	2920800	+		38907	25500	26711	26764	44446	44446					0.06244455373735036
LELAVSLGNL	10	Unmodified	_LELAVSLGNL_					0	0	0		ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;ENSG00000172932|ENST00000511455|ANKRD13D;ENST00000514166.5_1_11:67056880-67057734:+|nuORF;ENST00000512101.5_1_11:67056880-67058074:+|nuORF	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.801513671875	2	514.802957	1027.59136	-0.047188	-2.4292E-05	-0.86221	-0.00044387	-0.9094	-0.00046816	514.8025382842955	59.873	1.4474	59.672	59.209	60.657	-0.20016					96	38	5	0	0	0	0.61732	1	6865	6865		75.043	7.5496	1	34587000			38908	91	26712	26765	44447	44447					0.07866896274549617
LELDLDIDPA	10	Unmodified	_LELDLDIDPA_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.2734375	2	557.287337	1112.56012	1.3246	0.00073818	-0.11906	-6.6349E-05	1.2055	0.00067183	557.2875844435279	96.462	0.30052	96.464	96.274	96.574	0.0020752					8	6	2	0	0	0	0.03519	1	12235	12235		26.693	0	1	30657	+		38909	25017	26713	26766	44448	44448					0.008342784497926914
LELEAIDNQF	10	Unmodified	_LELEAIDNQF_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.322021484375	2	596.298236	1190.58192	-0.33947	-0.00020243	-0.70082	-0.0004179	-1.0403	-0.00062032	596.2975517550664	50.326	0.3741	50.221	50.011	50.385	-0.10558					13	9	2	0	0	0	0.03519	1	5116	5116		60.118	27.306	1	184440			38910	1775	26714	26767	44449	44449					-0.005749168016791373
LELEAIDNQF	10	Unmodified	_LELEAIDNQF_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	596.298236	1190.58192	-1.5694	-0.00093581	-6.5565	-0.0039096	-8.1259	-0.0048455	596.294212589831	49.853	0.76927	49.853	49.473	50.242	0	-0.10861	0.00032273	NaN	65.465	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509250			38911	1775	26714	26767							-0.005749168016791373
LELEAIDNQF	10	Unmodified	_LELEAIDNQF_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	596.298236	1190.58192	-0.6877	-0.00041007	-7.314	-0.0043613	-8.0017	-0.0047714	596.2938715976092	50.101	0.89194	49.949	49.634	50.526	-0.1512	-0.011767	-0.0005806	NaN	65.465	41	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549620			38912	1775	26714	26767							-0.005749168016791373
LELEAIDNQF	10	Unmodified	_LELEAIDNQF_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	596.298236	1190.58192	-1.0435	-0.00062224	-7.0159	-0.0041836	-8.0594	-0.0048058	596.2940887183862	49.748	0.73889	49.822	49.465	50.204	0.074196	-0.13939	-0.00022513	NaN	65.465	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585710			38913	1775	26714	26767							-0.005749168016791373
LELEEMLVP	9	Unmodified	_LELEEMLVP_					0	0	0		ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.757080078125	2	536.783376	1071.5522	-1.1506	-0.0006176	2.6641	0.00143	1.5135	0.00081243	536.7854305035997	38.279	0.19099	38.057	37.928	38.119	-0.22149					6	5	2	0	0	0	0.024523	1	3136	3136		21.96	0	1	66979			38914	8587	26715	26768	44450	44450					0.019284279286694073
LELEKRKRVE	10	Unmodified	_LELEKRKRVE_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.78033447265625	3	433.929621	1298.76703	0.38556	0.00016731	-0.60115	-0.00026086	-0.21559	-9.355E-05	433.9293370033278	41.496	0.70743	41.519	41.182	41.89	0.023006					44	19	3	0	0	0	0.03519	1	3626	3626		14.694	0.60766	1	302620	+		38915	21319	26716	26769	44451	44451					0.12960110788594648
LELEKRKRVE	10	Unmodified	_LELEKRKRVE_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	433.929621	1298.76703	0.37607	0.00016319	-0.31136	-0.00013511	0.064716	2.8082E-05	433.9293296757598	41.254	0.56112	41.254	40.981	41.542	0	-0.10907	0.00015781	NaN	20.03	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411230	+		38916	21319	26716	26769							0.12960110788594648
LELEKRKRVE	10	Unmodified	_LELEKRKRVE_					0	0	0			REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	REV__nc|ENSG00000102606|Q14155-6|ARHGEF7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	433.929621	1298.76703	0.17193	7.4606E-05	-0.27206	-0.00011805	-0.10013	-4.3447E-05	433.9294849454528	41.438	0.6742	41.315	41.051	41.725	-0.12317	-0.047493	0.00020897	NaN	20.03	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461780	+		38917	21319	26716	26769							0.12960110788594648
LELELTPQ	8	Unmodified	_LELELTPQ_					0	0	0		ENSG00000198754|ENST00000327582|OXCT2	ENSG00000198754|ENST00000327582|OXCT2	ENSG00000198754|ENST00000327582|OXCT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.3127136230469	2	471.760758	941.506963	-0.011199	-5.2832E-06	1.2776	0.00060272	1.2664	0.00059744	471.7609639182853	45.356	0.46593	45.103	44.826	45.292	-0.25252					18	12	2	0	0	0	0.027866	1	4239	4239		40.778	0	1	169290			38918	10189	26717	26770	44452	44452					0.033869454577597935
LELFAIPPR	9	Unmodified	_LELFAIPPR_					0	0	0		ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.3153686523438	2	528.316035	1054.61752	-0.13654	-7.2137E-05	-2.9724	-0.0015704	-3.109	-0.0016425	528.3146190415623	97.474	0.97646	97.313	96.862	97.838	-0.16106					47	21	3	0	0	0	0.6504	1	12048	12048		49.442	5.3247	1	223940			38919	15907	26718	26771	44453	44453					0.09239210236637518
LELFFILVITG	11	Unmodified	_LELFFILVITG_					0	0	0			REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14	REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.73388671875	3	422.256564	1263.74786	0.78676	0.00033222	2.7066	0.0011429	3.4934	0.0014751	422.25781172843324	59.201	0.30041	59.201	59.07	59.37	0					10	7	2	0	0	0	0.024828	1	6766	6766		9.2118	0	1	81091	+		38920	21716	26719	26772	44454	44454					0.12653761444971678
LELFLISTN	9	Unmodified	_LELFLISTN_					0	0	0			REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF;REV__nc|ENSG00000076706|P43121-2|MCAM	REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.27099609375	2	525.297507	1048.58046	-1.9961	-0.0010486	-1.3901	-0.00073024	-3.3863	-0.0017788	525.2967181531611	29.811	0.98035	29.811	29.528	30.508	0					48	23	3	0	0	0	0.024477	1	1880	1880		14.865	0	1	882050	+		38921	20572;36476	26720	26773	44455	44455					0.058114939002507526
LELGDELLY	9	Unmodified	_LELGDELLY_					0	0	0			REV__nc|ENSG00000086200|Q9UI26-2|IPO11	REV__nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.8192138671875	2	532.779148	1063.54374	0.0029542	1.5739E-06	-3.7835	-0.0020158	-3.7805	-0.0020142	532.7771387783929	70.311	0.44061	70.097	69.772	70.213	-0.21425					23	10	3	0	0	0	0.024436	1	8130	8130		38.806	0	1	579470	+		38922	20769	26721	26774	44456	44456					0.014511972836771747
LELGIIRRA	9	Unmodified	_LELGIIRRA_					0	0	0			REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C	REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.8323974609375	2	520.832383	1039.65021	-0.59143	-0.00030804	0.21417	0.00011154	-0.37727	-0.00019649	520.8323879275085	20.981	0.62269	20.891	20.584	21.207	-0.090092					31	12	3	0	0	0	0.31247	1	595	595		73.975	10.441	1	536010	+		38923	24246	26722	26775	44457	44457					0.13197417359538122
LELGSKFHM	9	Unmodified	_LELGSKFHM_					0	0	0			REV__ENSG00000111371|ENST00000398637|SLC38A1	REV__ENSG00000111371|ENST00000398637|SLC38A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2662963867188	2	531.276052	1060.53755	0.11234	5.9684E-05	-3.5666	-0.0018949	-3.4543	-0.0018352	531.2742340482561	17.379	0.24125	17.236	17.084	17.325	-0.14278					7	4	2	0	0	0	0.024541	1	138	138		19.36	4.6959	1	19948	+		38924	21915	26723	26776	44458	44458					0.00970400571168284
LELIEYLGQ	9	Unmodified	_LELIEYLGQ_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7681884765625	2	539.294965	1076.57538	2.1407	0.0011544	2.5351	0.0013672	4.6758	0.0025216	539.7977225611002	19.275	0.14754	19.341	19.242	19.389	0.066195					4	2	2	0	0	0	0.024427	1	349	349		34.173	0	1	8519.5	+		38925	22153	26724	26777	44459	44459					0.040151900376031335
LELIKGRSV	9	Unmodified	_LELIKGRSV_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2961730957031	2	507.818941	1013.62333	-0.719	-0.00036512	0.51367	0.00026085	-0.20534	-0.00010427	507.81911989790854	59.84	0.63158	59.919	59.611	60.242	0.078888					46	16	4	0	0	0	0.024021	1	6773	6773		40.778	0	1	1560000	+		38926	28096	26725	26778	44460	44460					0.11706308748341598
LELILFLY	8	Unmodified	_LELILFLY_					0	0	0			REV__nc|ENSG00000140612|P67812-4|SEC11A	REV__nc|ENSG00000140612|P67812-4|SEC11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2943115234375	2	512.309887	1022.60522	-0.34983	-0.00017922	-4.305	-0.0022055	-4.6548	-0.0023847	512.3075720375947	65.439	0.45261	65.198	65.004	65.457	-0.24145					21	10	3	0	0	0	0.027866	1	7504	7504		26.796	0	1	179340	+		38927	36718	26726	26779	44461	44461					0.09482173773596969
LELIMRQKW	9	Unmodified	_LELIMRQKW_					0	0	0			REV__ENSG00000125871|ENST00000377710|MGME1	REV__ENSG00000125871|ENST00000377710|MGME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.23529052734375	3	406.233876	1215.6798	-0.56379	-0.00022903	4.0944	0.0016633	3.5306	0.0014343	406.23537133243804	29.366	0.77296	29.121	28.838	29.611	-0.24524					44	17	4	0	0	0	0.70156	1	1790	1790		45.972	3.6342	1	1032300	+		38928	22856	26727	26780	44462	44462					0.08058613313346541
LELIMRQKW	9	Unmodified	_LELIMRQKW_					0	0	0			REV__ENSG00000125871|ENST00000377710|MGME1	REV__ENSG00000125871|ENST00000377710|MGME1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	406.233876	1215.6798	-0.56379	-0.00022903	4.0944	0.0016633	3.5306	0.0014343	406.23537133243804	29.366	0.77296	29.121	28.838	29.611	-0.24524	0.052083	0.00059188	NaN	45.972	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1032300	+		38929	22856	26727	26780							0.08058613313346541
LELIMRQKW	9	Unmodified	_LELIMRQKW_					0	0	0			REV__ENSG00000125871|ENST00000377710|MGME1	REV__ENSG00000125871|ENST00000377710|MGME1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	406.233876	1215.6798	0.13688	5.5605E-05	3.2753	0.0013306	3.4122	0.0013862	406.2351067814398	29.264	0.6395	29.092	28.808	29.447	-0.17258	0.023446	-0.00040635	NaN	45.972	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161900	+		38930	22856	26727	26780							0.08058613313346541
LELIMRQKW	9	Unmodified	_LELIMRQKW_					0	0	0			REV__ENSG00000125871|ENST00000377710|MGME1	REV__ENSG00000125871|ENST00000377710|MGME1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	406.233876	1215.6798	-0.41967	-0.00017048	3.7372	0.0015182	3.3176	0.0013477	406.2352348402459	29.142	0.75863	28.993	28.743	29.501	-0.14952	-0.075529	0.00015657	NaN	45.972	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022100	+		38931	22856	26727	26780							0.08058613313346541
LELIQKKT	8	Unmodified	_LELIQKKT_					0	0	0			REV__ENSG00000130182|ENST00000576985|ZSCAN10	REV__ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2921142578125	2	486.808042	971.601532	-0.48246	-0.00023486	-2.7877	-0.0013571	-3.2702	-0.001592	486.80680092307847	81.809	0.20042	81.809	81.63	81.83	0					7	4	2	0	0	0	0.027866	1	10184	10184		17.365	0	1	138240	+		38932	23089	26728	26781	44463	44463					0.11459503999765275
LELKEPRW	8	Unmodified	_LELKEPRW_					0	0	0			REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2882690429688	2	535.803291	1069.59203	0.028607	1.5328E-05	1.5271	0.00081823	1.5557	0.00083356	536.3060459621064	81.48	0.99886	81.251	80.736	81.734	-0.22891					28	23	2	0	0	0	0.027866	1	9719	9719		23.042	10.083	1	55567	+		38933	22707	26729	26782	44464	44464					0.06001735714221468
LELKFKDKN	9	Unmodified	_LELKFKDKN_					0	0	0		SMCHD1|p.L535F|1|0.22|ENSG00000101596|chr18:2700876-2700876|G/T|missense_variant	SMCHD1|p.L535F|1|0.22|ENSG00000101596|chr18:2700876-2700876|G/T|missense_variant	SMCHD1|p.L535F|1|0.22|ENSG00000101596|chr18:2700876-2700876|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.810302734375	2	567.829506	1133.64446	-1.0016	-0.00056875	-1.4105	-0.00080093	-2.4121	-0.0013697	567.8283837757281	69.066	0.37888	69.081	68.83	69.209	0.015121					15	9	2	0	0	0	0.023454	1	8244	8244		62.107	0	1	93533			38934	37908	26730	26783	44465	44465					0.08298274057187882
LELKFKDKN	9	Unmodified	_LELKFKDKN_					0	0	0		SMCHD1|p.L535F|1|0.22|ENSG00000101596|chr18:2700876-2700876|G/T|missense_variant	SMCHD1|p.L535F|1|0.22|ENSG00000101596|chr18:2700876-2700876|G/T|missense_variant	SMCHD1|p.L535F|1|0.22|ENSG00000101596|chr18:2700876-2700876|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.829345703125	2	567.829506	1133.64446	-1.142	-0.00064848	0.8156	0.00046312	-0.32643	-0.00018536	567.8299076024258	65.166	0.73471	64.964	64.697	65.432	-0.20254					54	17	5	0	0	0	0.10174	1	7429	7429		110.12	16.977	1	3057400			38935	37908	26730	26783	44466	44466					0.08298274057187882
LELKKHLL	8	Unmodified	_LELKKHLL_					0	0	0		nc|ENSG00000171169|Q69YI7-2|NAIF1;ENSG00000171169|ENST00000373078|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.3259582519531	2	497.326402	992.638252	-0.67972	-0.00033805	0.95997	0.00047742	0.28025	0.00013937	497.3267455830675	36.165	0.73198	35.96	35.752	36.484	-0.20518					44	19	3	0	0	0	0.37125	1	2810	2810		101.21	17.924	1	2176200			38936	8122	26731	26784	44467	44467					0.14163800616313438
LELKKHLL	8	Unmodified	_LELKKHLL_					0	0	0		nc|ENSG00000171169|Q69YI7-2|NAIF1;ENSG00000171169|ENST00000373078|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.32623291015625	2	497.326402	992.638252	0.13859	6.8926E-05	0.059724	2.9702E-05	0.19832	9.8629E-05	497.32629076967135	36.201	0.91035	35.985	35.779	36.689	-0.21661					51	23	4	0	0	0	0.78609	2	2821	2821;2833		60.294	0	1	2293000			38937	8122	26731	26784	44468;44469	44468					0.14163800616313438
LELKKHLL	8	Unmodified	_LELKKHLL_					0	0	0		nc|ENSG00000171169|Q69YI7-2|NAIF1;ENSG00000171169|ENST00000373078|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.3264465332031	2	497.326402	992.638252	0.749	0.0003725	-0.62744	-0.00031204	0.12157	6.0458E-05	497.3259136393034	36.124	0.66659	35.926	35.708	36.375	-0.19829					48	17	4	0	0	0	0.59392	1	2796	2796		76.847	0	1	1894900			38938	8122	26731	26784	44470	44470					0.14163800616313438
LELLEALVE	9	Unmodified	_LELLEALVE_					0	0	0			REV__nc|ENSG00000196118|A1A4V9-4|CFAP119	REV__nc|ENSG00000196118|A1A4V9-4|CFAP119	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.81787109375	2	514.79734	1027.58013	0.3666	0.00018873	0.33479	0.00017235	0.70139	0.00036108	514.7973135767145	68.608	0.48129	68.378	68.116	68.598	-0.23048					19	11	2	0	0	0	0.024405	1	7916	7916		44.117	1.7207	1	382370	+		38939	28128	26732	26785	44471	44471					0.06744074180369353
LELLEIRK	8	Unmodified	_LELLEIRK_					0	0	0		ENST00000393832.7_1_4:156588357-156618096:+|nuORF;ENST00000509901.5_1_4:156588357-156617929:+|nuORF;ENST00000506455.5_1_4:156588030-156617929:+|nuORF	ENST00000393832.7_1_4:156588357-156618096:+|nuORF	ENST00000393832.7_1_4:156588357-156618096:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.757568359375	2	507.321317	1012.62808	-0.59884	-0.0003038	0.29949	0.00015194	-0.29935	-0.00015187	507.32114927454273	28.251	0.28046	28.099	27.922	28.203	-0.15195					9	6	2	0	0	0	0.027866	1	1597	1597		19.36	0	1	63134			38940	13471	26733	26786	44472	44472					0.12227192891100458
LELLINKHI	9	Unmodified	_LELLINKHI_					0	0	0		ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8405151367188	2	546.842416	1091.67028	-0.54263	-0.00029673	-3.6256	-0.0019826	-4.1682	-0.0022794	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	0.59099	1	12730	12730		53.351	3.9099	1	11370000			38941	2821	26734	26787	44473	44473					0.12811168299458586
LELLINKHI	9	Unmodified	_LELLINKHI_					0	0	0		ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8406372070312	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	0.72875	1	12699	12699		44.117	1.2525	1	10488000			38942	2821	26734	26787	44474	44474					0.12811168299458586
LELLKRKGY	9	Unmodified	_LELLKRKGY_					0	0	0			REV__ENSG00000119922|ENST00000371826|IFIT2	REV__ENSG00000119922|ENST00000371826|IFIT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.358642578125	2	560.347866	1118.68118	-1.0137	-0.00056803	3.7843	0.0021205	2.7706	0.0015525	560.3500371964832	106.13	0.45561	106	105.75	106.21	-0.1328					35	18	2	0	0	0	0.024535	1	13208	13208		18.324	0.95945	1	247780	+		38943	22499	26735	26788	44475	44475					0.1265857067376146
LELLKRKGY	9	Unmodified	_LELLKRKGY_					0	0	0			REV__ENSG00000119922|ENST00000371826|IFIT2	REV__ENSG00000119922|ENST00000371826|IFIT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.347866	1118.68118	-0.039706	-2.2249E-05	2.0214	0.0011327	1.9817	0.0011104	560.349084706581	106.14	0.25146	106.01	105.83	106.09	-0.1238	-0.0024329	-0.0012246	NaN	18.324	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57509	+		38944	22499	26735	26788							0.1265857067376146
LELLLKER	8	Unmodified	_LELLLKER_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2878723144531	2	507.321317	1012.62808	0.17799	9.0298E-05	0.16674	8.459E-05	0.34473	0.00017489	507.32082282978666	61.827	0.45876	61.6	61.415	61.874	-0.22663					23	10	3	0	0	0	0.027866	1	7158	7158		24.203	0	1	313310			38945	5759	26736	26789	44476	44476					0.12227192891089089
LELLLLLGQG	10	Unmodified	_LELLLLLGQG_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2708740234375	2	534.8368	1067.65905	-0.50839	-0.0002719	0.61671	0.00032984	0.10832	5.7934E-05	534.8367811087127	52.887	0.72108	52.739	52.447	53.168	-0.14723					47	18	3	0	0	0	0.03519	1	5625	5625		40.778	0	1	1004800			38946	7146	26737	26790	44477	44477					0.1279234620533316
LELLRLRE	8	Unmodified	_LELLRLRE_					0	0	0			REV__ENST00000480581.1_1_1:223939741-223945196:+|nuORF	REV__ENST00000480581.1_1_1:223939741-223945196:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3139038085938	2	521.324391	1040.63423	0.090822	4.7348E-05	-0.40928	-0.00021337	-0.31846	-0.00016602	521.3239731735031	45.815	0.68389	45.554	45.284	45.968	-0.26118					45	18	4	0	0	0	0.027866	1	4415	4415		26.693	0	1	1872700	+		38947	33427	26738	26791	44478	44478					0.11553711122610366
LELLTQEF	8	Unmodified	_LELLTQEF_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.307373046875	2	496.768583	991.522613	1.3109	0.00065122	-2.2049	-0.0010953	-0.89396	-0.00044409	496.76707654770615	83.027	0.21375	82.937	82.83	83.043	-0.090454					6	4	2	0	0	0	0.027866	1	10339	10339		30.504	0	1	32127			38948	1941	26739	26792	44479	44479					0.026512319748235313
LELMDTNNI	9	Unmodified	_LELMDTNNI_					0	0	0		ABCC9|p.T1202M|1|0.15|ENSG00000069431|chr12:21829022-21829022|G/A|missense_variant	ABCC9|p.T1202M|1|0.15|ENSG00000069431|chr12:21829022-21829022|G/A|missense_variant	ABCC9|p.T1202M|1|0.15|ENSG00000069431|chr12:21829022-21829022|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2850952148438	2	531.760432	1061.50631	-0.21838	-0.00011612	-1.7459	-0.0009284	-1.9643	-0.0010445	531.7588515885674	80.026	0.46296	79.807	79.494	79.957	-0.21923					30	10	4	0	0	0	0.024523	1	9588	9588		21.96	0	1	240870			38949	7	26740	26793	44480	44480					-0.02198217253612711
LELMDTNNI	9	Unmodified	_LELMDTNNI_					0	0	0		ABCC9|p.T1202M|1|0.15|ENSG00000069431|chr12:21829022-21829022|G/A|missense_variant	ABCC9|p.T1202M|1|0.15|ENSG00000069431|chr12:21829022-21829022|G/A|missense_variant	ABCC9|p.T1202M|1|0.15|ENSG00000069431|chr12:21829022-21829022|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.760432	1061.50631	-0.064449	-3.4271E-05	-2.981	-0.0015852	-3.0454	-0.0016194	531.7587371712167	79.914	0.42073	79.763	79.529	79.949	-0.15051	-0.010432	-0.00029206	NaN	10.265	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265230			38950	7	26740	26793							-0.02198217253612711
LELNCHATI	9	Unmodified	_LELNCHATI_					0	0	0			REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF	REV__ENST00000466256.6_1_1:17257024-17267483:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8127746582031	2	507.257859	1012.50117	0.49527	0.00025123	-3.5671	-0.0018094	-3.0718	-0.0015582	507.255957921423	54.362	1.6674	54.46	54.077	55.744	0.098015					100	46	3	0	0	0	0.023454	1	5914	5914		82.241	7.1972	1	2908300	+		38951	33027	26741	26794	44481	44481					-0.004584763255365942
LELNHSELI	9	Unmodified	_LELNHSELI_					0	0	0		ENST00000532108.1_1_11:4623360-4626734:-|nuORF;ENSG00000167333|ENST00000300747|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF	ENST00000532108.1_1_11:4623360-4626734:-|nuORF	ENST00000532108.1_1_11:4623360-4626734:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2698974609375	2	534.290214	1066.56587	-0.86085	-0.00045994	3.317	0.0017723	2.4562	0.0013123	534.2917992430343	52.847	0.45395	52.847	52.595	53.049	0					20	11	2	0	0	0	0.02435	1	5651	5651		60.972	3.1607	1	210420			38952	7675	26742	26795	44482	44482					0.03525421752101465
LELPKASP	8	Unmodified	_LELPKASP_					0	0	0		ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.30255126953125	2	427.752736	853.490919	-0.29492	-0.00012615	0.14304	6.1185E-05	-0.15188	-6.4966E-05	427.75329712917016	66.405	0.1529	66.182	66.106	66.259	-0.22374					5	3	2	0	0	0	0.027866	1	7622	7622		16.473	0	1	34608			38953	6907	26743	26796	44483	44483					0.05831284011514981
LELPLRVY	8	Unmodified	_LELPLRVY_					0	0	0		ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7630615234375	2	501.80276	1001.59097	-0.64323	-0.00032277	-3.8358	-0.0019248	-4.4791	-0.0022476	501.8008331983921	35.264	0.63141	35.264	35.056	35.687	0					34	16	4	0	0	0	0.027866	1	2757	2757		26.796	16.531	1	307120			38954	11867	26744	26797	44484	44484					0.09023521345329755
LELPLRVY	8	Unmodified	_LELPLRVY_					0	0	0		ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.80276	1001.59097	-1.0431	-0.00052341	-3.0676	-0.0015393	-4.1107	-0.0020627	501.80107935348383	35.101	0.52044	35.079	34.866	35.386	-0.021767	-0.079431	0.00054558	NaN	26.796	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278110			38955	11867	26744	26797							0.09023521345329755
LELPLRVY	8	Unmodified	_LELPLRVY_					0	0	0		ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	ENST00000297875.6_1_X:37985921-37986104:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.80276	1001.59097	-0.38244	-0.00019191	-3.8841	-0.001949	-4.2665	-0.0021409	501.80076620421505	35.088	0.55185	35.132	34.868	35.42	0.044056	-0.02599	-0.00027382	NaN	26.796	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292370			38956	11867	26744	26797							0.09023521345329755
LELQFHQP	8	Unmodified	_LELQFHQP_					0	0	0			REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.81097412109375	2	506.266542	1010.51853	-0.66264	-0.00033547	0.81063	0.00041039	0.14798	7.4919E-05	506.26659771271727	56.46	0.85838	56.295	55.986	56.845	-0.16432					67	23	4	0	0	0	0.027866	1	6328	6328		65.803	12.452	1	1558100	+		38957	22696	26745	26798	44485	44485					0.01369187271757255
LELQFHQP	8	Unmodified	_LELQFHQP_					0	0	0			REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.266542	1010.51853	-0.64819	-0.00032815	-0.98355	-0.00049794	-1.6317	-0.00082609	506.26525007089737	56.103	0.98205	56.2	55.634	56.616	0.097893	-0.15253	-0.0015368	NaN	65.803	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1294100	+		38958	22696	26745	26798							0.01369187271757255
LELQFHQP	8	Unmodified	_LELQFHQP_					0	0	0			REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.266542	1010.51853	-0.095981	-4.8592E-05	0.52711	0.00026686	0.43112	0.00021826	506.2656395805745	56.681	0.27359	56.514	56.323	56.597	-0.1672	0.16107	-7.1982E-06	NaN	65.803	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63010	+		38959	22696	26745	26798							0.01369187271757255
LELQLMIK	8	Unmodified	_LELQLMIK_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.S1359Y|1|0.27|ENSG00000184634|chrX:71131578-71131578|C/A|missense_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7850341796875	2	494.298996	986.583439	-1.102	-0.00054473	2.3726	0.0011728	1.2706	0.00062805	494.3003145053565	30.021	0.33213	30.097	29.839	30.172	0.075518					9	7	2	0	0	0	0.027866	1	1826	1826		74.255	10.048	1	51598			38960	9358;5780	26746	26799	44486	44486					0.08961045753380859
LELQNDGQD	9	Unmodified	_LELQNDGQD_					0	0	0			REV__ENSG00000277058|ENST00000617807|HNRNPCL3	REV__ENSG00000277058|ENST00000617807|HNRNPCL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.3079223632812	2	516.235635	1030.45672	-0.53451	-0.00027593	-1.6181	-0.00083532	-2.1526	-0.0011112	516.2347461590446	46.537	0.24274	46.343	46.238	46.481	-0.19387					13	6	3	0	0	0	0.023655	1	4471	4471		42.864	5.0528	1	172470	+		38961	27266	26747	26800	44487	44487					-0.057292089380325706
LELQNDGQD	9	Unmodified	_LELQNDGQD_					0	0	0			REV__ENSG00000277058|ENST00000617807|HNRNPCL3	REV__ENSG00000277058|ENST00000617807|HNRNPCL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.235635	1030.45672	-0.076689	-3.959E-05	-0.79825	-0.00041209	-0.87494	-0.00045168	516.2350611995005	46.486	0.21344	46.389	46.259	46.473	-0.096649	0.022777	0.00039202	NaN	42.864	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158750	+		38962	27266	26747	26800							-0.057292089380325706
LELQSSQCH	9	Unmodified	_LELQSSQCH_					0	0	0		ENST00000598007.2_1_20:19737775-19737994:-|nuORF	ENST00000598007.2_1_20:19737775-19737994:-|nuORF	ENST00000598007.2_1_20:19737775-19737994:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3233032226562	2	522.742573	1043.47059	0.069583	3.6374E-05	-3.369	-0.0017611	-3.2995	-0.0017248	522.740445924507	71.079	1.4718	71.079	70.397	71.869	0					56	36	2	0	0	0	0.024447	1	8715	8715		32.812	0	1	173090			38963	17463	26748	26801	44488	44488					-0.04940254710595582
LELRKEVQL	9	Unmodified	_LELRKEVQL_					0	0	0			REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.3424072265625	2	564.342781	1126.67101	-0.33711	-0.00019025	-0.25302	-0.00014279	-0.59014	-0.00033304	564.3427056728598	46.324	1.3358	46.324	45.953	47.289	0					93	36	4	0	0	0	0.2101	2	4551	4551;4589		87.696	4.946	1	11357000	+		38964	19843	26749	26802	44489;44490	44489					0.11273962948507688
LELRKEVQL	9	Unmodified	_LELRKEVQL_					0	0	0			REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3425903320312	2	564.342781	1126.67101	-1.3171	-0.0007433	0.87573	0.00049421	-0.44138	-0.00024909	564.343325512874	46.378	1.1001	46.227	45.954	47.054	-0.15157					94	29	5	0	0	0	0.15366	2	4556	4556;4569		98.629	0.047388	1	11423000	+		38965	19843	26749	26802	44491;44492	44491					0.11273962948507688
LELRPKYNGI	10	Unmodified	_LELRPKYNGI_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.21234130859375	3	401.567912	1201.68191	1.3281	0.00053331	-0.28143	-0.00011301	1.0466	0.00042029	401.90226042120076	36.481	0.52218	36.283	36.054	36.576	-0.19829					19	12	2	0	0	0	0.03519	1	2862	2862		21.686	0	1	48321			38966	7344	26750	26803	44493	44493					0.0891336532281457
LELRSAKGK	9	Unmodified	_LELRSAKGK_					0	0	0		ENSG00000115295|ENST00000320081|CLIP4	ENSG00000115295|ENST00000320081|CLIP4	ENSG00000115295|ENST00000320081|CLIP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.3077697753906	2	501.308741	1000.60293	0.34852	0.00017472	0.3159	0.00015836	0.66442	0.00033308	501.3088110243184	103.28	0.42327	103.16	102.98	103.4	-0.12724					21	9	3	0	0	0	0.99726	1	12839	12839		20.947	1.587	1	155170			38967	3429	26751	26804	44494	44494					0.10265138088516323
LELSAKLNI	9	Unmodified	_LELSAKLNI_					0	0	0			REV__BPIFA2|p.D151E|1|0.23|ENSG00000131050|chr20:33175449-33175449|C/G|missense_variant	REV__BPIFA2|p.D151E|1|0.23|ENSG00000131050|chr20:33175449-33175449|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.78936767578125	2	500.8055	999.596446	-0.084932	-4.2534E-05	-2.5945	-0.0012993	-2.6794	-0.0013419	501.3057150621049	92.898	0.25345	92.775	92.587	92.84	-0.12242					8	5	2	0	0	0	0.024447	1	11428	11428		19.104	0	1	28352	+		38968	19217	26752	26805	44495	44495					0.09663200137117656
LELSQWHN	8	Unmodified	_LELSQWHN_					0	0	0		CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8171997070312	2	513.753798	1025.49304	-0.37315	-0.00019171	-1.3099	-0.00067295	-1.683	-0.00086466	513.753068246887	72.757	0.54092	72.757	72.493	73.034	0					23	12	3	0	0	0	0.027866	1	8830	8830		42.396	0	1	222700			38969	237	26753	26806	44496	44496					-0.01868287250681533
LELSRKYF	8	Unmodified	_LELSRKYF_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	528.297842	1054.58113	-0.65533	-0.00034621	1.3336	0.00070456	0.67831	0.00035835	528.2970433165864	56.02	0.35587	56.118	55.965	56.321	0.097897					14	9	2	0	0	0	0.027866	1	6138	6138		31.955	0	1	82019			38970	2567	26754	26807	44497	44497					0.056023333399252806
LELSVALVL	9	Unmodified	_LELSVALVL_					0	0	0			REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.8043212890625	2	478.804968	955.595384	0.17129	8.2013E-05	-0.39871	-0.0001909	-0.22742	-0.00010889	478.8046590036551	70.298	0.53268	70.03	69.703	70.236	-0.26853					32	12	4	0	0	0	0.29104	1	8178	8178		76.847	8.3619	1	963000	+		38971	35708	26755	26808	44498	44498					0.11580985768216578
LELSVALVL	9	Unmodified	_LELSVALVL_					0	0	0			REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	478.804968	955.595384	0.17129	8.2013E-05	-0.39871	-0.0001909	-0.22742	-0.00010889	478.8046590036551	70.298	0.53268	70.03	69.703	70.236	-0.26853	0.093743	-6.7136E-05	NaN	76.847	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963000	+		38972	35708	26755	26808							0.11580985768216578
LELSVALVL	9	Unmodified	_LELSVALVL_					0	0	0			REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.804968	955.595384	-0.075565	-3.6181E-05	-0.028303	-1.3552E-05	-0.10387	-4.9733E-05	478.804724018776	70.172	0.5353	69.921	69.608	70.143	-0.25063	-0.014656	0.00028757	NaN	76.847	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	956810	+		38973	35708	26755	26808							0.11580985768216578
LELSVALVL	9	Unmodified	_LELSVALVL_					0	0	0			REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	REV__ENST00000591531.1_1_19:37264096-37264246:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.804968	955.595384	0.32791	0.000157	-0.41771	-0.0002	-0.089805	-4.2999E-05	478.8046357561584	70.079	0.52724	69.857	69.638	70.165	-0.22245	-0.079087	-8.534E-05	NaN	76.847	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836300	+		38974	35708	26755	26808							0.11580985768216578
LELSVKVR	8	Unmodified	_LELSVKVR_					0	0	0			REV__ENST00000307522.3_1_19:46916540-46916792:-|nuORF	REV__ENST00000307522.3_1_19:46916540-46916792:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2996520996094	2	472.300384	942.586216	-0.79651	-0.00037619	0.47575	0.0002247	-0.32076	-0.00015149	472.30046146429584	38.196	0.98843	37.978	37.755	38.744	-0.21848					66	27	4	0	0	0	0.74904	1	3139	3139		63.306	0	1	4220900	+		38975	30136	26756	26809	44499	44499					0.11262637202571568
LELSYYHCL	9	Unmodified	_LELSYYHCL_					0	0	0			REV__ENST00000549335.5_1_12:105433559-105443704:-|nuORF	REV__ENST00000549335.5_1_12:105433559-105443704:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.79736328125	2	570.773342	1139.53213	0.29983	0.00017113	-3.92	-0.0022374	-3.6202	-0.0020663	570.7709867440079	57.606	0.79976	57.432	56.734	57.534	-0.1749					32	21	2	0	0	0	0.024183	1	6448	6448		50.025	0	1	191260	+		38976	34891	26757	26810	44500	44500					-0.032053230113206155
LELTLPNIY	9	Unmodified	_LELTLPNIY_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7817993164062	2	538.305332	1074.59611	-0.46188	-0.00024863	0.88944	0.00047879	0.42756	0.00023016	538.8077260480806	50.444	0.63799	50.264	49.788	50.426	-0.18071					21	16	2	0	0	0	0.024506	1	5088	5088		23.042	0	1	246820			38977	143	26758	26811	44501	44501					0.06179780417301117
LELTVLPI	8	Unmodified	_LELTVLPI_					0	0	0			REV__ENST00000258534.12_1_12:102316939-102317011:+|nuORF	REV__ENST00000258534.12_1_12:102316939-102317011:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.26171875	2	449.286411	896.55827	-0.39508	-0.0001775	-3.0826	-0.001385	-3.4777	-0.0015625	449.2849492423877	31.411	0.5292	31.259	31.085	31.615	-0.15231					21	13	2	0	0	0	0.027866	1	2065	2065		13.775	0	1	169130	+		38978	29580	26759	26812	44502	44502					0.10585314222475972
LELVAVPQL	9	Unmodified	_LELVAVPQL_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.3027038574219	2	491.302593	980.590633	0.25062	0.00012313	-0.16595	-8.1533E-05	0.084664	4.1596E-05	491.3023746723937	95.339	0.94035	95.342	95.045	95.985	0.0033798					51	21	3	0	0	0	0.96322	1	12131	12131		27.882	1.1893	1	1315100	+		38979	20583	26760	26813	44503	44503					0.09956101625471092
LELVHQVL	8	Unmodified	_LELVHQVL_					0	0	0		ENST00000342992.10_3_2:179437654-179437981:-|nuORF	ENST00000342992.10_3_2:179437654-179437981:-|nuORF	ENST00000342992.10_3_2:179437654-179437981:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.78717041015625	2	475.78711	949.559667	0.36201	0.00017224	-0.46926	-0.00022327	-0.10725	-5.1028E-05	475.7868325295316	85.757	1.4476	85.619	84.908	86.356	-0.13752					87	33	4	0	0	0	1.0574	1	10405	10405		24.203	0	1	4488600			38980	12517	26761	26814	44504	44504					0.08286948311229025
LELVLFLCL	9	Unmodified	_LELVLFLCL_					0	0	0			REV__ENST00000581166.5_1_17:56423483-56423582:-|nuORF	REV__ENST00000581166.5_1_17:56423483-56423582:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8165283203125	2	531.817021	1061.61949	-0.35753	-0.00019014	0.01606	8.5408E-06	-0.34147	-0.0001816	531.8171725070692	99.857	0.84225	99.867	99.223	100.07	0.010117					39	20	3	0	0	0	0.90698	1	12736	12736		31.955	0.42505	1	906920	+		38981	35527	26762	26815	44505	44505					0.09114502930242452
LELVLSRA	8	Unmodified	_LELVLSRA_					0	0	0		ENSG00000197272|ENST00000356897|IL27	ENSG00000197272|ENST00000356897|IL27	ENSG00000197272|ENST00000356897|IL27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7431640625	2	450.779285	899.544017	-0.60489	-0.00027267	-3.4469	-0.0015538	-4.0518	-0.0018265	450.779507515406	26.733	0.53969	26.814	26.456	26.996	0.081293					19	12	3	0	0	0	0.027866	1	1357	1357		16.473	0	1	49099			38982	9976	26763	26816	44506	44506					0.09022661794188025
LELVVRGLP	9	Unmodified	_LELVVRGLP_					0	0	0			REV__ENST00000492149.1_1_10:81107262-81109515:+|nuORF	REV__ENST00000492149.1_1_10:81107262-81109515:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2926330566406	2	498.316035	994.617516	-0.72168	-0.00035963	0.20659	0.00010295	-0.51509	-0.00025668	498.31591087379803	47.598	0.40781	47.657	47.423	47.831	0.059093					18	12	2	0	0	0	0.02435	1	4687	4687		19.997	0	1	165420	+		38983	21715	26764	26817	44507	44507					0.11999210236660929
LELWEYFP	8	Unmodified	_LELWEYFP_					0	0	0			REV__ENSG00000136270|ENST00000258770|TBRG4	REV__ENSG00000136270|ENST00000258770|TBRG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.8135986328125	2	548.771126	1095.5277	-0.80859	-0.00044373	-0.62172	-0.00034118	-1.4303	-0.00078491	548.77071742182	56.706	0.65819	56.803	56.51	57.168	0.097893					33	18	2	0	0	0	0.027866	1	6215	6215		28.254	4.0515	1	2362400	+		38984	23642	26765	26818	44508	44508					-0.016244641625689837
LELWRRRG	8	Unmodified	_LELWRRRG_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.79638671875	2	543.319974	1084.6254	-1.5314	-0.00083207	-0.93482	-0.00050791	-2.4663	-0.00134	543.8204323408958	39.875	0.7141	39.899	39.598	40.312	0.023727					34	19	2	0	0	0	0.027866	1	3464	3464		31.955	0	1	1599300			38985	4576	26766	26819	44509	44509					0.08646782276787235
LELWRRRGPV	10	Unmodified	_LELWRRRGPV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.88232421875	2	641.380563	1280.74657	1.2808	0.0008215	0.55366	0.00035511	1.8345	0.0011766	641.8817204231664	105.67	0.93253	105.67	105.32	106.25	0					54	32	3	0	0	0	1.0992	1	13572	13572		32.812	3.6424	1	169550			38986	4576	26767	26820	44510	44510					0.11742984919442279
LELWSQID	8	Unmodified	_LELWSQID_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.3236083984375	2	502.258382	1002.50221	-0.10346	-5.1966E-05	0.62891	0.00031588	0.52545	0.00026391	502.25847542533654	73.63	0.47133	73.353	73.133	73.605	-0.2769					14	11	2	0	0	0	0.027866	1	8674	8674		44.117	18.667	1	107740	+		38987	22391	26768	26821	44511	44511					0.0010606131501162963
LEMAGLSLPSG	11	Unmodified	_LEMAGLSLPSG_					0	0	0		ENST00000377689.2_1_9:38527126-38527906:+|nuORF;nc|ENSG00000176007|B1ANY3|FAM220BP	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7973022460938	2	537.778625	1073.5427	-0.40362	-0.00021706	0.086296	4.6408E-05	-0.31732	-0.00017065	537.7785489854731	77.48	0.58991	77.269	76.995	77.585	-0.21087					21	13	2	0	0	0	0.024803	1	9564	9564		71.877	0	1	228570			38988	13213	26769	26822	44512	44512					0.008866596431289508
LEMDSADSC	9	Unmodified	_LEMDSADSC_					0	0	0			REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2773132324219	2	485.67825	969.341948	-0.48959	-0.00023778	-0.80272	-0.00038986	-1.2923	-0.00062765	485.6784782956791	42.36	0.34531	42.386	42.221	42.566	0.026012					22	9	3	0	0	0	0.024523	1	3806	3806		21.96	0	1	205010	+		38989	36973	26770	26823	44513	44513					-0.14394977735855718
LEMIGFIENN	10	Unmodified	_LEMIGFIENN_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.7498168945312	2	590.289356	1178.56416	-1.7208	-0.0010158	0.98499	0.00058143	-0.73579	-0.00043433	590.2890228602545	60.552	0.24551	60.376	60.198	60.443	-0.1761					7	5	2	0	0	0	0.03519	1	6724	6724		38.754	13.303	1	112420			38990	1454	26771	26824	44514	44514					-0.017979553281520566
LEMILSPTV	9	Unmodified	_LEMILSPTV_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.29046630859375	2	501.780636	1001.54672	0.16465	8.2616E-05	-0.035295	-1.771E-05	0.12935	6.4906E-05	501.7806592361063	85.313	0.12812	85.176	85.113	85.241	-0.13753					4	2	2	0	0	0	0.024506	1	10320	10320		16.473	3.514	1	34740			38991	5213	26772	26825	44515	44515					0.04600749136830018
LEMIYPMTV	9	Unmodified	_LEMIYPMTV_					0	0	0			REV__ENST00000427814.5_1_7:27871882-27872035:-|nuORF	REV__ENST00000427814.5_1_7:27871882-27872035:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.276123046875	2	548.774496	1095.53444	-0.6836	-0.00037514	-0.61916	-0.00033978	-1.3028	-0.00071492	549.2766266195202	46.636	0.76511	46.687	46.441	47.206	0.051395					61	20	4	0	0	0	0.70186	1	4567	4567		45.952	7.1458	1	2572400	+		38992	32306	26773	26826	44516	44516					-0.009506105978516644
LEMKHWPQKKP	11	Unmodified	_LEMKHWPQKKP_					0	0	0			REV__PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	REV__PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.2602844238281	3	474.595585	1420.76493	0.97525	0.00046285	-0.070635	-3.3523E-05	0.90462	0.00042933	474.59560526053275	40.746	0.17719	40.746	40.623	40.8	0					5	4	2	0	0	0	0.024834	1	3603	3603		12.957	0	1	44962	+		38993	24473	26774	26827	44517	44517					0.07137358779141323
LEMKQTGI	8	Unmodified	_LEMKQTGI_					0	0	0			REV__nc|ENSG00000157426|Q4L235-4|AASDH	REV__nc|ENSG00000157426|Q4L235-4|AASDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.24908447265625	2	460.249503	918.484453	-0.052897	-2.4346E-05	-0.10878	-5.0067E-05	-0.16168	-7.4412E-05	460.24933811351633	42.946	0.82742	42.833	42.281	43.109	-0.11253					44	21	3	0	0	0	0.42327	1	3908	3908		94.006	0	1	1103500	+		38994	36813	26775	26828	44518	44518					0.021950227884985907
LEMLQTKT	8	Unmodified	_LEMLQTKT_					0	0	0			REV__ENSG00000178084|ENST00000318351|HTR3C	REV__ENSG00000178084|ENST00000318351|HTR3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.29620361328125	2	482.26261	962.510668	-0.4024	-0.00019406	0.095266	4.5943E-05	-0.30714	-0.00014812	482.2612222586426	46.438	0.58774	46.236	45.819	46.406	-0.20226					21	15	2	0	0	0	0.027866	1	4432	4432		20.947	0	1	240230	+		38995	27165	26776	26829	44519	44519					0.027912919599771158
LEMLRRRLK	9	Unmodified	_LEMLRRRLK_					0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.2388000488281	3	405.588653	1213.74413	0.13449	5.4548E-05	-1.0556	-0.00042813	-0.92108	-0.00037358	405.5883635392608	27.136	0.21134	27.124	26.994	27.205	-0.012981					6	5	2	0	0	0	0.024313	1	1424	1424		51.193	12.439	1	40574	+		38996	21731	26777	26830	44520	44520					0.14580813190127628
LEMNKVQVD	9	Unmodified	_LEMNKVQVD_					0	0	0		ENSG00000163288|ENST00000295454|GABRB1	ENSG00000163288|ENST00000295454|GABRB1	ENSG00000163288|ENST00000295454|GABRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.305419921875	2	538.276249	1074.53795	-0.64622	-0.00034785	2.3141	0.0012456	1.6679	0.00089778	538.276608296813	69.283	0.67506	69.283	68.789	69.464	0					35	17	3	0	0	0	0.024374	1	8270	8270		40.778	7.9657	1	346210			38997	7057	26778	26831	44521	44521					0.0036577550038146
LEMQPQKCY	9	Unmodified	_LEMQPQKCY_					0	0	0		ENST00000479109.2_1_5:92225632-92225905:-|nuORF	ENST00000479109.2_1_5:92225632-92225905:-|nuORF	ENST00000479109.2_1_5:92225632-92225905:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7779541015625	2	570.264827	1138.5151	-0.22092	-0.00012598	-0.10214	-5.8248E-05	-0.32306	-0.00018423	570.2651997552899	32.417	0.28162	32.26	32.121	32.403	-0.15772					13	6	3	0	0	0	0.024405	1	2199	2199		20.947	0	1	108100			38998	15163	26779	26832	44522	44522					-0.04861566888757807
LEMRNRCW	8	Unmodified	_LEMRNRCW_					0	0	0		ENST00000323588.8_2_3:52284308-52284410:+|nuORF	ENST00000323588.8_2_3:52284308-52284410:+|nuORF	ENST00000323588.8_2_3:52284308-52284410:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.813720703125	2	554.262953	1106.51135	-0.049128	-2.723E-05	4.2023	0.0023292	4.1531	0.0023019	554.2633424924917	59.783	0.19432	59.534	59.377	59.571	-0.24841					5	4	2	0	0	0	0.027866	1	6585	6585		24.203	0	1	55684			38999	12241	26780	26833	44523	44523					-0.03764191871960065
LEMSSLPDLTP	11	Unmodified	_LEMSSLPDLTP_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.87554931640625	3	401.53729	1201.59004	0.088918	3.5704E-05	1.969	0.00079063	2.0579	0.00082634	401.5384294860867	37.662	0.38757	37.442	37.192	37.579	-0.2195					13	9	2	0	0	0	0.024727	1	3011	3011		11.932	0	1	166030			39000	9931	26781	26834	44524	44524					-0.0026910587655493146
LEMTACQS	8	Unmodified	_LEMTACQS_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7878723144531	2	441.688421	881.362289	1.0557	0.00046629	1.9323	0.00085347	2.988	0.0013198	441.6886495687186	40.724	0.21447	40.601	40.547	40.762	-0.12317					6	5	2	0	0	0	0.027866	1	3595	3595		10.866	0	1	47974	+		39001	36984	26782	26835	44525	44525					-0.08313762285376924
LENAKKLSM	9	Unmodified	_LENAKKLSM_					0	0	0		ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENST00000578432.2_1_18:5429333-5433551:-|nuORF;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-7|EPB41	ENSG00000082397|ENST00000341928|EPB41L3;ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000159023|P11171-6|EPB41	ENSG00000088367|ENST00000338074|EPB41L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2210693359375	2	517.289159	1032.56377	-1.3331	-0.00068958	0.99346	0.00051391	-0.33961	-0.00017568	517.2892813678942	36.112	0.48483	36.112	35.849	36.334	0					22	13	3	0	0	0	0.023817	1	2852	2852		42.396	0	1	174020			39002	1869;1732;6714	26783	26836	44526	44526					0.04878669742629427
LENDIKVEI	9	Unmodified	_LENDIKVEI_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.7974243164062	2	536.797872	1071.58119	-1.0485	-0.00056283	0.79183	0.00042505	-0.25667	-0.00013778	536.7982682848028	66.236	0.73094	65.991	65.691	66.422	-0.24517					60	18	4	0	0	0	0.077175	1	7606	7606		118.74	6.3322	1	8793300			39003	6370	26784	26837	44527	44527					0.0482628854927043
LENDLKSVN	9	Unmodified	_LENDLKSVN_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.3079223632812	2	516.272021	1030.52949	-0.59012	-0.00030466	3.5677	0.0018419	2.9776	0.0015373	516.2734835419706	46.456	0.29206	46.254	46.044	46.336	-0.20226					11	7	2	0	0	0	0.022587	1	4471	4471		37.812	6.2817	1	164630			39004	8017	26785	26838	44528	44528					0.01544544855391905
LENDLKSVN	9	Unmodified	_LENDLKSVN_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.272021	1030.52949	-0.062801	-3.2422E-05	3.8945	0.0020106	3.8317	0.0019782	516.7753067662859	46.594	0.37798	46.333	46.083	46.461	-0.26118	0.039511	0.00010063	NaN	37.812	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135630			39005	8017	26785	26838							0.01544544855391905
LENEGAVCMC	10	Unmodified	_LENEGAVCMC_					0	0	0			REV__ENST00000381971.7_1_9:4299540-4299738:-|nuORF	REV__ENST00000381971.7_1_9:4299540-4299738:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.3263549804688	2	534.71157	1067.40859	-0.5592	-0.00029901	0.69791	0.00037318	0.13871	7.4169E-05	534.7119106777279	77.872	0.42342	77.71	77.484	77.908	-0.16196					12	9	2	0	0	0	0.03519	1	9262	9262		26.693	0	1	39654	+		39006	31531	26786	26839	44529	44529					-0.12242065445593653
LENEIEELI	9	Unmodified	_LENEIEELI_					0	0	0		ENST00000342657.7_1_13:53211462-53211567:+|nuORF	ENST00000342657.7_1_13:53211462-53211567:+|nuORF	ENST00000342657.7_1_13:53211462-53211567:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.288818359375	2	551.287337	1100.56012	-0.88646	-0.00048869	4.4103	0.0024313	3.5238	0.0019426	551.289876680173	47.864	2.2661	47.926	47.525	49.791	0.061691					108	63	2	0	0	0	0.086035	1	4784	4784		115.49	5.3742	1	3458300			39007	12511	26787	26840	44530	44530					0.013862784497860048
LENEPWKT	8	Unmodified	_LENEPWKT_					0	0	0			REV__ENSG00000188133|ENST00000342743|TMEM215	REV__ENSG00000188133|ENST00000342743|TMEM215	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2928161621094	2	508.756007	1015.49746	-0.20105	-0.00010228	3.0315	0.0015423	2.8305	0.00144	508.757484061732	50.896	0.78933	50.896	50.642	51.431	0					52	21	4	0	0	0	0.027866	1	5351	5351		27.882	4.8398	1	1675100	+		39008	28010	26788	26841	44531	44531					-0.00966822827751912
LENERQEN	8	Unmodified	_LENERQEN_					0	0	0			REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.3079223632812	2	516.241252	1030.46795	-0.63715	-0.00032892	-0.80509	-0.00041562	-1.4422	-0.00074454	516.2409565233061	46.239	0.33353	46.037	45.967	46.3	-0.20226					11	8	2	0	0	0	0.027866	1	4471	4471		25.574	0	1	255160	+		39009	20323	26789	26842	44532	44532					-0.04606386843875043
LENEVCEDF	9	Unmodified	_LENEVCEDF_					0	0	0		ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2592163085938	2	549.226422	1096.43829	-0.21718	-0.00011928	-2.2528	-0.0012373	-2.47	-0.0013566	549.7264993394595	40.227	0.1865	40.002	39.891	40.078	-0.225					6	4	2	0	0	0	0.024541	1	3465	3465		23.042	4.7804	1	77018			39010	3684	26790	26843	44533	44533					-0.10607086904246898
LENINRLF	8	Unmodified	_LENINRLF_					0	0	0			REV__ENST00000524751.5_1_11:126139211-126143243:+|nuORF	REV__ENST00000524751.5_1_11:126139211-126143243:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.77374267578125	2	509.787641	1017.56073	-0.75061	-0.00038265	-0.21222	-0.00010819	-0.96283	-0.00049084	509.78738915841893	44.926	0.58984	44.673	44.391	44.981	-0.25252					41	14	4	0	0	0	0.027866	1	4187	4187		65.803	2.4969	1	1581200	+		39011	34396	26791	26844	44534	44534					0.05265162680143476
LENIVIEPK	9	Unmodified	_LENIVIEPK_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.344482421875	2	527.810782	1053.60701	-0.17551	-9.2636E-05	-0.098886	-5.2193E-05	-0.2744	-0.00014483	527.8104110471035	53.694	0.73918	53.79	53.518	54.258	0.095669					42	20	3	0	0	0	0.024257	1	5824	5824		58.23	8.6939	1	1488700	+		39012	21973	26792	26845	44535	44535					0.08235182791554507
LENLIVLNPLT	11	Unmodified	_LENLIVLNPLT_					0	0	0		CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant;nc|ENSG00000183230|Q9UI47-2|CTNNA3;CTNNA3|p.S760Kfs*6|1|0.13|ENSG00000183230|chr10:65966734-65966735|-/CCAAATCTTT|frameshift_variant;ENSG00000183230|ENST00000433211|CTNNA3	CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	CTNNA3|p.I308Tfs*40|1|0.35|ENSG00000183230|chr10:67180441-67180441|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.869140625	2	619.871371	1237.72819	-1.5196	-0.00094193	-2.0307	-0.0012588	-3.5503	-0.0022007	619.87000320551	104.9	0.59966	104.77	104.47	105.07	-0.13099					38	19	3	0	0	0	1.013	1	13063	13063		33.922	7.2287	1	162010			39013	602	26793	26846	44536	44536					0.11883385434202864
LENLYDELD	9	Unmodified	_LENLYDELD_					0	0	0			REV__ENSG00000184110|ENST00000331666|EIF3C	REV__ENSG00000184110|ENST00000331666|EIF3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.3242797851562	2	562.261319	1122.50808	-0.69369	-0.00039004	4.3638	0.0024536	3.6701	0.0020636	562.2633948542701	69.485	0.37261	69.218	69.121	69.493	-0.26725					13	8	2	0	0	0	0.024405	1	8049	8049		27.882	0	1	51754	+		39014	27636	26794	26847	44537	44537					-0.04826884963995326
LENRFSCWY	9	Unmodified	_LENRFSCWY_					0	0	0		ENSG00000226784|ENST00000458128|PGAM4	ENSG00000226784|ENST00000458128|PGAM4	ENSG00000226784|ENST00000458128|PGAM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.5874938964844	3	406.518453	1216.53353	-1.2224	-0.00049691	1.4879	0.00060485	0.26552	0.00010794	406.5188579578142	26.028	0.55671	25.865	25.544	26.101	-0.16331					28	15	3	0	0	0	0.024456	1	1217	1217		35.152	0	1	524010			39015	10667	26795	26848	44538	44538					-0.06607688922531452
LENRNALD	8	Unmodified	_LENRNALD_					0	0	0		ENST00000309988.8_1_2:95719231-95719417:+|nuORF	ENST00000309988.8_1_2:95719231-95719417:+|nuORF	ENST00000309988.8_1_2:95719231-95719417:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7558898925781	2	472.743431	943.472308	0.50636	0.00023938	-4.1754	-0.0019739	-3.6691	-0.0017345	472.7412232545319	42.88	0.21463	42.741	42.558	42.773	-0.13929					8	5	2	0	0	0	0.027866	1	3945	3945		79.713	10.085	1	69930			39016	12052	26796	26849	44539	44539					-0.001688776303353734
LENRNALD	8	Unmodified	_LENRNALD_					0	0	0		ENST00000309988.8_1_2:95719231-95719417:+|nuORF	ENST00000309988.8_1_2:95719231-95719417:+|nuORF	ENST00000309988.8_1_2:95719231-95719417:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75628662109375	2	472.743431	943.472308	0.76136	0.00035993	2.6377	0.001247	3.3991	0.0016069	472.7447417093615	43.021	0.87574	43.052	42.646	43.522	0.030827					36	23	2	0	0	0	0.027866	1	3894	3894		79.713	0	1	219710			39017	12052	26796	26849	44540	44540					-0.001688776303353734
LENSLLRN	8	Unmodified	_LENSLLRN_					0	0	0			REV__nc|ENSG00000143549|P06753-4|TPM3	REV__nc|ENSG00000143549|P06753-4|TPM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.27801513671875	2	479.769448	957.524344	-0.43869	-0.00021047	-3.0724	-0.001474	-3.5111	-0.0016845	479.76784028066106	82.594	0.51483	82.62	82.444	82.959	0.025711					14	11	2	0	0	0	0.027866	1	10222	10222		30.504	0	1	90203	+		39018	36736	26797	26850	44541	44541					0.04388285783431911
LENSNAKLQ	9	Unmodified	_LENSNAKLQ_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.277099609375	2	508.772188	1015.52982	-0.25531	-0.0001299	2.5592	0.0013021	2.3039	0.0011722	508.7718344331151	33.71	1.2646	33.766	33.423	34.688	0.056572					138	31	7	0	0	0	0.23085	1	2436	2436		84.916	10.941	1	5716200			39019	5284	26798	26851	44542	44542					0.022679645752418764
LENSVTFTK	9	Unmodified	_LENSVTFTK_					0	0	0		ENSG00000153802|ENST00000283916|TMPRSS11D	ENSG00000153802|ENST00000283916|TMPRSS11D	ENSG00000153802|ENST00000283916|TMPRSS11D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2638549804688	2	519.776939	1037.53933	0.25957	0.00013492	-3.3559	-0.0017443	-3.0964	-0.0016094	519.7753578056605	57.716	0.34333	57.525	57.407	57.75	-0.19018					11	8	2	0	0	0	0.024397	1	6303	6303		31.53	0	1	234130			39020	6358	26799	26852	44543	44543					0.022057328607616
LENTALCSY	9	Carbamidomethyl (C)	_LENTALC(Carbamidomethyl (C))SY_	LENTALC(1)SY		LENTALC(59)SY		0	1	0			REV__ENSG00000129009|ENST00000249842|ISLR	REV__ENSG00000129009|ENST00000249842|ISLR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.238525390625	2	535.744782	1069.47501	-1.2422	-0.00066549	-0.70704	-0.00037879	-1.9492	-0.0010443	535.7442377196412	60.44	0.51608	60.264	60.198	60.714	-0.1761					23	12	4	0	0	0	0.023417	1	6786	6786		58.782	12.83	1	1056800	+		39021	23026	26800	26853	44544	44544	302				-0.056947902877027445
LENVFCLW	8	Unmodified	_LENVFCLW_					0	0	0		ENST00000379638.8_1_5:112214193-112214352:-|nuORF	ENST00000379638.8_1_5:112214193-112214352:-|nuORF	ENST00000379638.8_1_5:112214193-112214352:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2536010742188	2	512.252046	1022.48954	-0.65531	-0.00033569	2.3467	0.0012021	1.6913	0.00086639	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.74904	1	5831	5831		63.306	2.3343	1	53582000			39022	13276	26801	26854	44545	44545					-0.020806733488825557
LENVMKKL	8	Unmodified	_LENVMKKL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79071044921875	2	487.788795	973.563038	0.29152	0.0001422	3.4181	0.0016673	3.7097	0.0018095	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.97924	1	10391	10391		40.573	1.7665	1	2091900			39023	3610	26802	26855	44546	44546					0.0751987509358969
LEPALRYL	8	Unmodified	_LEPALRYL_					0	0	0		ENSG00000162598|ENST00000371201|C1orf87;nc|nan|Q8N0U7-3|C1orf87;nc|nan|Q8N0U7-2|C1orf87	ENSG00000162598|ENST00000371201|C1orf87	ENSG00000162598|ENST00000371201|C1orf87	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79022216796875	2	487.78711	973.559667	-0.33809	-0.00016492	3.4071	0.0016619	3.069	0.001497	487.7909205774562	96.283	1.1017	96.283	95.735	96.836	0					75	25	5	0	0	0	1.0338	1	12264	12264		31.955	6.5047	1	1162000			39024	6958	26803	26856	44547	44547					0.0718294831123103
LEPAPLLLL	9	Unmodified	_LEPAPLLLL_					0	0	0			REV__ENSG00000137161|ENST00000372836|CNPY3	REV__ENSG00000137161|ENST00000372836|CNPY3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.80242919921875	2	489.815336	977.616119	1.3576	0.00066499	2.0103	0.00098469	3.368	0.0016497	489.8179825872928	25.086	0.2162	24.915	24.777	24.993	-0.17151					6	4	2	0	0	0	0.024466	1	1126	1126		18.324	0	1	45111	+		39025	23731	26804	26857	44548	44548					0.12641576147905198
LEPDSLAKV	9	Unmodified	_LEPDSLAKV_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2919006347656	2	486.274032	970.533512	0.37098	0.0001804	1.9358	0.00094131	2.3067	0.0011217	486.27593958672736	81.956	0.4263	81.727	81.479	81.905	-0.22891					14	9	2	0	0	0	0.024405	1	9877	9877		44.117	0	1	144330			39026	9482;18594	26805	26858	44549	44549					0.04706634349099659
LEPDVFLF	8	Unmodified	_LEPDVFLF_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.26318359375	2	490.260394	978.506234	0.64899	0.00031818	2.8541	0.0013993	3.5031	0.0017174	490.26261113854963	104.79	0.69953	104.62	104.15	104.85	-0.16485					29	20	2	0	0	0	1.0574	1	13023	13023		26.796	3.7536	1	114620	+		39027	29199	26806	26859	44550	44550					0.016121508087280745
LEPFQVPTV	9	Unmodified	_LEPFQVPTV_					0	0	0			REV__ENST00000248098.7_1_16:1750115-1750268:+|nuORF	REV__ENST00000248098.7_1_16:1750115-1750268:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2843627929688	2	515.2844	1028.55425	-0.51792	-0.00026687	0.15612	8.0446E-05	-0.3618	-0.00018643	515.2843696854155	82.422	1.2714	82.422	81.909	83.18	0					58	29	3	0	0	0	0.22902	1	10300	10300		85.161	17.834	1	1598300	+		39028	29480	26807	26860	44551	44551					0.04111224728740126
LEPFRRVI	8	Unmodified	_LEPFRRVI_					0	0	0			REV__nc|ENSG00000106034|A4D0V7-2|CPED1	REV__nc|ENSG00000106034|A4D0V7-2|CPED1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2825317382812	2	515.313826	1028.6131	-0.62048	-0.00031974	4.2448	0.0021874	3.6243	0.0018677	515.316863286917	65.566	0.66528	65.293	65.055	65.72	-0.27282					22	18	3	0	0	0	0.027866	1	7787	7787		50.025	0	1	438200	+		39029	21590	26808	26861	44552	44552					0.09993745813767418
LEPGEPMRLS	10	Unmodified	_LEPGEPMRLS_					0	0	0			REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.237060546875	2	564.789524	1127.56449	0.23582	0.00013319	-3.2953	-0.0018612	-3.0595	-0.001728	564.7873649003151	53.08	0.58965	52.953	52.591	53.181	-0.12705					32	14	3	0	0	0	0.03519	1	5510	5510		39.253	6.4404	1	312490	+		39030	35175	26809	26862	44553	44553					0.005814643917119611
LEPGEPMRLS	10	Unmodified	_LEPGEPMRLS_					0	0	0			REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.789524	1127.56449	0.34056	0.00019234	-4.0676	-0.0022973	-3.7271	-0.002105	564.7870192228506	53.231	0.5355	52.973	52.763	53.298	-0.25838	0.039368	-0.00035735	NaN	39.253	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322530	+		39031	35175	26809	26862							0.005814643917119611
LEPGEPMRLS	10	Unmodified	_LEPGEPMRLS_					0	0	0			REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	REV__ENST00000561643.5_1_15:75639698-75645080:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.789524	1127.56449	-0.084443	-4.7692E-05	-3.9065	-0.0022064	-3.9909	-0.002254	564.7874088255401	53.065	0.66045	52.875	52.51	53.171	-0.18982	-0.058584	-0.00017536	NaN	39.253	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356750	+		39032	35175	26809	26862							0.005814643917119611
LEPGKREP	8	Unmodified	_LEPGKREP_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7725524902344	2	463.258717	924.50288	0.086696	4.0163E-05	-3.175	-0.0014708	-3.0883	-0.0014307	463.25723265481435	23.268	0.88886	23.345	22.933	23.822	0.076239					31	20	2	0	0	0	0.027866	1	894	894		21.96	13.138	1	125550	+		39033	26058	26810	26863	44554	44554					0.037609007547075635
LEPGLNIL	8	Unmodified	_LEPGLNIL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2510681152344	2	434.760561	867.506569	0.099327	4.3184E-05	0.13705	5.9582E-05	0.23637	0.00010277	434.76052542967517	78.443	0.45347	78.459	78.195	78.649	0.015907					16	10	2	0	0	0	0.027866	1	9649	9649		31.955	2.8053	1	144760			39034	7393	26811	26864	44555	44555					0.06751570528570028
LEPLALHPPL	10	Unmodified	_LEPLALHPPL_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1;nc|ENSG00000070601|Q5SYB0-2|FRMPD1;nc|ENSG00000070601|Q5SYB0-3|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.325927734375	2	550.329142	1098.64373	0.081598	4.4906E-05	-3.345	-0.0018409	-3.2634	-0.001796	550.3276499365805	98.961	0.92738	98.957	98.596	99.523	-0.0038834					49	20	3	0	0	0	1.0541	1	12592	12592		38.806	0.99462	1	255790			39035	1429	26812	26865	44556	44556					0.09835479408138781
LEPLDGPA	8	Unmodified	_LEPLDGPA_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2250671386719	2	406.213443	810.412334	1.0696	0.0004345	1.7422	0.00070772	2.8119	0.0011422	406.2146120226486	26.612	0.25658	26.693	26.543	26.799	0.081293					7	5	2	0	0	0	0.027866	1	1314	1314		26.796	17.974	1	21098	+		39036	26810;37445	26813	26866	44557	44557					-0.0004556829355806258
LEPLLKGP	8	Unmodified	_LEPLLKGP_					0	0	0			REV__ENST00000591753.1_2_17:40715869-40717983:+|nuORF	REV__ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.77203369140625	2	433.770929	865.527304	0.2178	9.4477E-05	3.1721	0.001376	3.3899	0.0014705	433.77214821640433	72.288	1.1872	72.011	71.352	72.539	-0.2769					68	28	4	0	0	0	1.0574	1	8460	8460		20.482	1.1219	1	1175800	+		39037	35729	26814	26867	44558	44558					0.08916160908233906
LEPLLLAG	8	Unmodified	_LEPLLLAG_					0	0	0			REV__NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant	REV__NPAP1|p.C309Vfs*81|1|0.16|ENSG00000185823|chr15:24676791-24676791|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2887268066406	2	413.257654	824.500755	-0.033364	-1.3788E-05	-2.1413	-0.00088491	-2.1747	-0.0008987	413.25695642742966	96.689	0.43633	96.533	96.296	96.733	-0.15646					27	9	4	0	0	0	0.027866	1	11955	11955		13.775	0	1	169150	+		39038	37293	26815	26868	44559	44559					0.08148472016898722
LEPLNLLI	8	Unmodified	_LEPLNLLI_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7560729980469	2	462.791861	923.569169	0.13518	6.2561E-05	-3.2059	-0.0014837	-3.0707	-0.0014211	462.79029813905976	40.465	0.27257	40.465	40.314	40.587	0					9	7	2	0	0	0	0.027866	1	3553	3553		14.664	0.88877	1	106810			39039	3986	26816	26869	44560	44560					0.10432716596767477
LEPLPERPP	9	Unmodified	_LEPLPERPP_					0	0	0			REV__ENST00000586940.1_1_19:6027321-6110452:-|nuORF	REV__ENST00000586940.1_1_19:6027321-6110452:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3026123046875	2	524.295299	1046.57605	0.33766	0.00017703	1.6938	0.00088806	2.0315	0.0010651	524.2955105948563	100.44	0.47267	100.3	100.06	100.53	-0.13364					22	13	2	0	0	0	0.024541	1	12431	12431		19.997	0	1	236500	+		39040	35614	26817	26870	44561	44561					0.05462029477325814
LEPLPLTSL	9	Unmodified	_LEPLPLTSL_					0	0	0		ENSG00000233198|ENST00000445101|RNF224	ENSG00000233198|ENST00000445101|RNF224	ENSG00000233198|ENST00000445101|RNF224	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.75048828125	2	491.794601	981.574648	-0.12674	-6.233E-05	2.4262	0.0011932	2.2994	0.0011309	491.79563694975747	46.422	0.94065	46.161	45.557	46.498	-0.26118					60	24	3	0	0	0	0.024535	1	4429	4429		7.1934	0	1	835300			39041	10710	26818	26871	44562	44562					0.08312395388577443
LEPLPQIPNL	10	Unmodified	_LEPLPQIPNL_					0	0	0		SPATS1|p.P244A|1|0.45|ENSG00000249481|chr6:44370085-44370085|C/G|missense_variant;nc|ENSG00000249481|Q496A3-2|SPATS1;ENSG00000249481|ENST00000674044|SPATS1	SPATS1|p.P244A|1|0.45|ENSG00000249481|chr6:44370085-44370085|C/G|missense_variant	SPATS1|p.P244A|1|0.45|ENSG00000249481|chr6:44370085-44370085|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3295288085938	2	567.331882	1132.64921	0.067311	3.8188E-05	-3.5801	-0.0020311	-3.5128	-0.0019929	567.329771800472	102.68	0.76749	102.55	102.23	103	-0.12666					35	17	4	0	0	0	1.0122	1	12762	12762		44.377	4.319	1	740630			39042	10841	26819	26872	44563	44563					0.0881915819995811
LEPLPRILY	9	Unmodified	_LEPLPRILY_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3179321289062	2	557.336967	1112.65938	0.04493	2.5041E-05	-2.9458	-0.0016418	-2.9009	-0.0016168	557.3347216769748	69.386	0.64218	69.386	69.273	69.915	0					17	15	2	0	0	0	0.023817	1	8380	8380		51.335	3.4199	1	48688			39043	3167	26820	26873	44564	44564					0.10755765925205196
LEPLPRILY	9	Unmodified	_LEPLPRILY_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.336967	1112.65938	-0.18279	-0.00010187	-2.0682	-0.0011527	-2.251	-0.0012545	557.3359079582899	69.552	0.20299	69.567	69.426	69.629	0.015129	0.09026	0.00058163	NaN	56.721	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61077			39044	3167	26820	26873							0.10755765925205196
LEPLRKSF	8	Unmodified	_LEPLRKSF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7661437988281	2	495.292559	988.570566	-0.17635	-8.7343E-05	1.7015	0.00084273	1.5251	0.00075539	495.2935347400622	40.865	0.64056	40.638	40.366	41.006	-0.2278					29	16	3	0	0	0	0.027866	1	3583	3583		24.203	0	1	198380			39045	10179	26821	26874	44565	44565					0.07582350685515848
LEPLSKLL	8	Unmodified	_LEPLSKLL_					0	0	0			REV__nc|ENSG00000156970|O60566-2|BUB1B	REV__nc|ENSG00000156970|O60566-2|BUB1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.88812255859375	2	456.791861	911.569169	-0.8517	-0.00038905	3.2975	0.0015063	2.4458	0.0011172	456.7931265480636	37.71	1.0114	37.628	37.323	38.334	-0.082512					59	28	3	0	0	0	0.027866	1	3080	3080		40.573	8.6178	1	291390	+		39046	25103	26822	26875	44566	44566					0.10984716596760791
LEPLSSLALE	10	Unmodified	_LEPLSSLALE_					0	0	0		ENST00000479650.5_1_9:140459535-140473096:-|nuORF;ENSG00000148399|ENST00000277540|DPH7	ENST00000479650.5_1_9:140459535-140473096:-|nuORF	ENST00000479650.5_1_9:140459535-140473096:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7666625976562	2	536.300247	1070.58594	-0.84473	-0.00045303	1.0779	0.00057807	0.23316	0.00012505	536.3020709150502	36.978	0.51469	36.758	36.447	36.962	-0.2195					18	12	2	0	0	0	0.03519	1	2955	2955		56.721	21.103	1	77034			39047	6026	26823	26876	44567	44567					0.05347172692017921
LEPLVAPLAD	10	Unmodified	_LEPLVAPLAD_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7815551757812	2	519.297507	1036.58046	-0.65789	-0.00034164	0.80438	0.00041771	0.14649	7.6072E-05	519.2978085961712	79.263	0.57933	79.263	78.951	79.53	0					20	13	2	0	0	0	0.03519	1	9791	9791		42.396	21.449	1	169710			39048	7621	26824	26877	44568	44568					0.06363493900221329
LEPLVAPLAD	10	Unmodified	_LEPLVAPLAD_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7573852539062	2	519.297507	1036.58046	0.43977	0.00022837	-0.81651	-0.00042401	-0.37673	-0.00019564	519.2968355732302	59.448	0.83456	59.2	58.888	59.723	-0.24842					41	20	3	0	0	0	0.03519	1	6632	6632		20.947	4.4738	1	503620			39049	7621	26824	26877	44569	44569					0.06363493900221329
LEPLVAPLAD	10	Unmodified	_LEPLVAPLAD_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.297507	1036.58046	-0.99747	-0.00051798	0.96972	0.00050357	-0.027754	-1.4413E-05	519.2978894089684	79.451	0.53931	79.279	79.029	79.568	-0.17226	0.013812	0.00026858	NaN	34.173	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150710			39050	7621	26824	26877							0.06363493900221329
LEPLVAPLAD	10	Unmodified	_LEPLVAPLAD_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.297507	1036.58046	-0.37934	-0.00019699	-0.21677	-0.00011257	-0.5961	-0.00030956	519.2974213011348	79.235	0.57295	79.254	79.07	79.643	0.018677	-0.011267	-0.00096369	NaN	34.173	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163580			39051	7621	26824	26877							0.06363493900221329
LEPLVPAS	8	Unmodified	_LEPLVPAS_					0	0	0			REV__MSI1|p.P254Q|1|0.08|ENSG00000135097|chr12:120351373-120351373|G/T|missense_variant	REV__MSI1|p.P254Q|1|0.08|ENSG00000135097|chr12:120351373-120351373|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2375183105469	2	413.239461	824.46437	0.064624	2.6705E-05	-3.0455	-0.0012585	-2.9808	-0.0012318	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	1.0338	1	9098	9098		31.955	3.7006	1	908900	+		39052	23512	26825	26878	44570	44570					0.045115951201864846
LEPMGDRVT	9	Unmodified	_LEPMGDRVT_					0	0	0			REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2925109863281	2	509.255317	1016.49608	-0.77521	-0.00039478	1.5626	0.00079578	0.78742	0.000401	509.256101327745	52.025	0.65026	52.117	51.754	52.404	0.091942					33	16	3	0	0	0	0.024412	1	5477	5477		31.955	0	1	774000	+		39053	23722	26826	26879	44571	44571					-0.011507801881634805
LEPMGDRVT	9	Unmodified	_LEPMGDRVT_					0	0	0			REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	REV__nc|ENSG00000137074|Q7Z2E3-2|APTX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.255317	1016.49608	-1.201	-0.0006116	7.1109	0.0036213	5.9099	0.0030097	509.76269728738936	52.487	0.44927	52.218	51.944	52.393	-0.26903	0.054808	0.0054729	NaN	29.15	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174490	+		39054	23722	26826	26879							-0.011507801881634805
LEPNRSGL	8	Unmodified	_LEPNRSGL_					0	0	0			REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.242919921875	2	443.243067	884.47158	-1.5616	-0.00069217	1.3354	0.00059192	-0.22616	-0.00010025	443.2436552231153	38.354	1.6453	38.381	37.884	39.529	0.027275					110	45	4	0	0	0	0.62178	1	3172	3172		74.255	0.28031	1	22628000	+		39055	23701	26827	26880	44572	44572					0.024723277206248895
LEPNVQDIIP	10	Unmodified	_LEPNVQDIIP_					0	0	0			REV__ENSG00000125875|ENST00000354200|TBC1D20	REV__ENSG00000125875|ENST00000354200|TBC1D20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.314208984375	2	569.311146	1136.60774	-0.2913	-0.00016584	-3.6095	-0.0020549	-3.9008	-0.0022208	569.81104312326	77.011	0.79025	77.011	76.678	77.469	0					39	18	3	0	0	0	0.03519	1	9486	9486		51.335	5.3835	1	839300	+		39056	22857	26828	26881	44573	44573					0.04489977440630355
LEPPALWQQN	10	Unmodified	_LEPPALWQQN_					0	0	0		ENST00000570164.5_1_16:31500819-31501287:-|nuORF	ENST00000570164.5_1_16:31500819-31501287:-|nuORF	ENST00000570164.5_1_16:31500819-31501287:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	599.285400390625	2	598.308938	1194.60332	-0.86791	-0.00051928	3.5961	0.0021516	2.7282	0.0016323	598.3108644838017	41.603	0.73085	41.375	41.006	41.737	-0.2278					33	18	3	0	0	0	0.03519	1	3678	3678		20.947	0	1	336410			39057	17021	26829	26882	44574	44574					0.013805130177161118
LEPPLLKS	8	Unmodified	_LEPPLLKS_					0	0	0			REV__ENSG00000136014|ENST00000258499|USP44	REV__ENSG00000136014|ENST00000258499|USP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.76397705078125	2	448.776211	895.537869	-0.72287	-0.00032441	1.7726	0.00079549	1.0497	0.00047108	448.77710137060717	30.401	0.11945	30.223	30.124	30.243	-0.17818					4	2	2	0	0	0	0.027866	1	1932	1932		17.365	0	1	26711	+		39058	23613	26830	26883	44575	44575					0.08592143562680121
LEPQKLPL	8	Unmodified	_LEPQKLPL_					0	0	0			REV__ENSG00000145375|ENST00000274008|SPATA5	REV__ENSG00000145375|ENST00000274008|SPATA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.7502746582031	2	469.289485	936.564418	-0.071388	-3.3502E-05	0.27531	0.0001292	0.20392	9.5697E-05	469.28942889445284	53.167	1.4987	53.02	52.488	53.987	-0.14723					73	40	2	0	0	0	0.027866	1	5861	5861		33.516	8.0654	1	177970	+		39059	24405	26831	26884	44576	44576					0.09359832453992567
LEPRGVKV	8	Unmodified	_LEPRGVKV_					0	0	0		ENST00000327097.4_1_2:119739014-119739962:+|nuORF	ENST00000327097.4_1_2:119739014-119739962:+|nuORF	ENST00000327097.4_1_2:119739014-119739962:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2705078125	2	449.279452	896.544351	0.50691	0.00022775	-0.33018	-0.00014834	0.17673	7.9401E-05	449.279217221189	21.41	0.47826	21.233	21.016	21.494	-0.17721					17	9	2	0	0	0	0.027866	1	644	644		30.504	5.0535	1	85275			39060	12289	26832	26885	44577	44577					0.09194081514056052
LEPRRREP	8	Unmodified	_LEPRRREP_					0	0	0		ENST00000546006.5_1_16:30773016-30773184:-|nuORF	ENST00000546006.5_1_16:30773016-30773184:-|nuORF	ENST00000546006.5_1_16:30773016-30773184:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8023681640625	2	526.801614	1051.58868	0.42741	0.00022516	1.7781	0.0009367	2.2055	0.0011619	526.802395744007	76.326	0.84262	76.338	76.015	76.857	0.011642					60	20	4	0	0	0	0.6536	1	9325	9325		71.296	12.514	1	2897200			39061	16503	26833	26886	44578	44578					0.06494485660232385
LEPVILAQ	8	Unmodified	_LEPVILAQ_					0	0	0			REV__ENST00000406999.2_1_6:153219925-153220018:+|nuORF	REV__ENST00000406999.2_1_6:153219925-153220018:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7684020996094	2	441.768386	881.522219	0.37011	0.0001635	-1.3269	-0.00058618	-0.95679	-0.00042268	441.76786199204633	102.85	1.6021	102.85	102.5	104.11	-0.0046005					103	38	6	0	0	0	0.845	1	13153	13153		55.504	2.1528	1	25278000	+		39062	31930	26834	26887	44579	44579					0.07671857045613706
LEPVPVLGAN	10	Unmodified	_LEPVPVLGAN_					0	0	0			REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7714538574219	2	504.78985	1007.56515	-0.10647	-5.3747E-05	-0.016123	-8.1386E-06	-0.1226	-6.1886E-05	504.7896054555338	48.927	0.34639	48.927	48.83	49.176	0					17	9	2	0	0	0	0.03519	1	5026	5026		34.173	3.6689	1	208820	+		39063	19768	26835	26888	44580	44580					0.061666271030503594
LEPYGPAEP	9	Unmodified	_LEPYGPAEP_					0	0	0			REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF	REV__ENST00000607927.1_1_22:18560886-18561522:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.8135681152344	2	486.737283	971.460012	-0.14172	-6.8982E-05	-1.3245	-0.00064471	-1.4663	-0.00071369	486.73666530290154	21.862	0.38654	21.671	21.372	21.758	-0.19072					10	7	2	0	0	0	0.024477	1	687	687		35.618	15.136	1	18069	+		39064	35962	26836	26889	44581	44581					-0.026859140933765957
LEQAAEEAFV	10	Unmodified	_LEQAAEEAFV_					0	0	0		nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496|CLTA	nc|ENSG00000122705|P09496-4|CLTA	nc|ENSG00000122705|P09496-4|CLTA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3320922851562	2	553.771854	1105.52915	-0.026324	-1.4578E-05	3.5233	0.0019511	3.497	0.0019365	553.7739162640825	95.417	0.33929	95.421	95.304	95.644	0.0033722					12	7	2	0	0	0	0.03519	1	12118	12118		31.53	5.9558	1	44603			39065	18230	26837	26890	44582	44582					-0.01938874864481477
LEQAAVGPAP	10	Unmodified	_LEQAAVGPAP_					0	0	0		ENSG00000167705|ENST00000301336|RILP	ENSG00000167705|ENST00000301336|RILP	ENSG00000167705|ENST00000301336|RILP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7577209472656	2	476.758549	951.502546	0.83708	0.00039909	-2.2271	-0.0010618	-1.39	-0.0006627	476.7575817068251	100.79	1.3062	100.66	100.28	101.58	-0.13364					59	31	2	0	0	0	1.1088	1	12508	12508		31.53	0	1	172540			39066	7727	26838	26891	44583	44583					0.0248548103485291
LEQAKPFDT	9	Unmodified	_LEQAKPFDT_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.7362670898438	2	524.769114	1047.52368	-0.50737	-0.00026625	2.6844	0.0014087	2.177	0.0011424	524.7702895569938	46.832	0.42611	46.679	46.514	46.94	-0.15301					13	10	2	0	0	0	0.024381	1	4625	4625		29.15	0	1	195600	+		39067	26325	26839	26892	44584	44584					0.001814463437312952
LEQAQSTDE	9	Unmodified	_LEQAQSTDE_					0	0	0			REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7283020019531	2	510.727643	1019.44073	-0.05865	-2.9954E-05	0.42035	0.00021468	0.3617	0.00018473	510.7279174994541	54.997	1.1685	54.997	54.689	55.858	0					79	32	5	0	0	0	0.53979	1	6038	6038		56.721	3.3696	1	7085500	+		39068	22132	26840	26893	44585	44585					-0.06820915174932907
LEQAQSTDE	9	Unmodified	_LEQAQSTDE_					0	0	0			REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7273864746094	2	510.727643	1019.44073	-0.23811	-0.00012161	1.2082	0.00061708	0.97014	0.00049548	510.72801201804344	55.098	1.1643	54.948	54.507	55.672	-0.15036					68	32	3	0	0	0	0.31037	1	6065	6065		74.255	10.949	1	7634200	+		39069	22132	26840	26893	44586	44586					-0.06820915174932907
LEQAQSTDE	9	Unmodified	_LEQAQSTDE_					0	0	0			REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7279968261719	2	510.727643	1019.44073	-0.53826	-0.00027491	1.292	0.00065988	0.75378	0.00038497	510.7281729110793	54.833	1.0452	54.931	54.626	55.671	0.098015					65	28	4	0	0	0	0.32811	1	5938	5938		71.877	3.0906	1	7428400	+		39070	22132	26840	26893	44587	44587					-0.06820915174932907
LEQEDEASQ	9	Unmodified	_LEQEDEASQ_					0	0	0			REV__POLR2D|p.E49Q|1|0.2|ENSG00000144231|chr2:127853034-127853034|C/G|missense_variant	REV__POLR2D|p.E49Q|1|0.2|ENSG00000144231|chr2:127853034-127853034|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.27099609375	2	524.725101	1047.43565	-1.9237	-0.0010094	2.4181	0.0012688	0.4944	0.00025943	524.7262832783387	29.98	0.8569	29.98	29.652	30.508	0					33	20	2	0	0	0	0.024447	1	1880	1880		19.104	0	1	129640	+		39071	37389	26841	26894	44588	44588					-0.08617219037569157
LEQEMPVQFQV	11	Unmodified	_LEQEMPVQFQV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76654052734375	3	449.891956	1346.65404	-0.58735	-0.00026424	2.757	0.0012403	2.1696	0.00097609	449.8931865970423	45.04	0.52141	44.94	44.633	45.154	-0.099449					28	13	4	0	0	0	0.024759	1	4232	4232		29.551	12.384	1	148940			39072	1640	26842	26895	44589	44589					-0.005423257195843689
LEQFKVDT	8	Unmodified	_LEQFKVDT_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.26007080078125	2	490.258382	978.502212	0.17838	8.7454E-05	4.2192	0.0020685	4.3976	0.002156	490.2619605390136	98.339	1.7967	98.174	98	99.797	-0.1652					76	43	3	0	0	0	1.0574	1	12177	12177		25.574	0	1	167280	+		39073	36804	26843	26896	44590	44590					0.012100613150096251
LEQFTKKLV	9	Unmodified	_LEQFTKKLV_					0	0	0			REV__ENST00000421427.5_1_2:188394185-188419049:-|nuORF	REV__ENST00000421427.5_1_2:188394185-188419049:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.3320922851562	2	553.334424	1104.6543	0.24251	0.00013419	-3.8038	-0.0021048	-3.5613	-0.0019706	553.3321684369349	95.389	1.2262	95.393	95.009	96.235	0.0041199					91	28	4	0	0	0	0.82115	1	12049	12049		37.812	1.3648	1	4195000	+		39074	29418	26844	26897	44591	44591					0.10615462062582992
LEQFVEKS	8	Unmodified	_LEQFVEKS_					0	0	0		ENST00000492961.1_1_7:35271114-35293240:-|nuORF;ENSG00000164532|ENST00000408931|TBX20	ENST00000492961.1_1_7:35271114-35293240:-|nuORF	ENST00000492961.1_1_7:35271114-35293240:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2923889160156	2	490.258382	978.502212	0.56417	0.00027659	1.7778	0.00087157	2.3419	0.0011482	490.25917156905996	66.193	0.69412	66.193	65.529	66.224	0					20	17	2	0	0	0	0.027866	1	7860	7860		32.812	0	1	190770			39075	7290	26845	26898	44592	44592					0.012100613150096251
LEQIVTQKSSV	11	Unmodified	_LEQIVTQKSSV_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	616.3251342773438	2	616.34826	1230.68197	-1.2533	-0.00077246	-1.6561	-0.0010208	-2.9094	-0.0017932	616.3488981148327	57.631	0.27627	57.453	57.319	57.596	-0.17775					9	6	2	0	0	0	0.019427	1	6322	6322		99.013	2.3479	1	46168	+		39076	26617	26846	26899	44593	44593					0.07585320532120932
LEQKAQGADY	10	Unmodified	_LEQKAQGADY_					0	0	0			REV__ENSG00000128596|ENST00000297788|CCDC136	REV__ENSG00000128596|ENST00000297788|CCDC136	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.797607421875	2	561.774928	1121.5353	-0.63599	-0.00035729	-3.9502	-0.0022191	-4.5862	-0.0025764	562.2735022402361	55.021	0.68835	54.874	54.533	55.221	-0.14609					30	18	3	0	0	0	0.03519	1	5922	5922		54.776	5.3348	1	266360	+		39077	22999	26847	26900	44594	44594					-0.020603566329327805
LEQKDILPN	9	Unmodified	_LEQKDILPN_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8322143554688	2	535.298039	1068.58152	-0.1319	-7.0603E-05	3.8339	0.0020523	3.702	0.0019817	535.3001507801456	78.79	0.55949	78.535	78.212	78.772	-0.25471					20	12	2	0	0	0	0.024418	1	9358	9358		37.812	7.3079	1	192850			39078	6931	26848	26901	44595	44595					0.04997708269161194
LEQKDILPN	9	Unmodified	_LEQKDILPN_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.298039	1068.58152	-0.40374	-0.00021612	4.2067	0.0022518	3.803	0.0020357	535.3002694878697	78.624	0.47717	78.468	78.254	78.731	-0.15592	-0.032427	0.00015352	NaN	37.812	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193960			39079	6931	26848	26901							0.04997708269161194
LEQKKLGY	8	Unmodified	_LEQKKLGY_					0	0	0			REV__ENST00000518193.1_1_8:63767865-63768189:-|nuORF	REV__ENST00000518193.1_1_8:63767865-63768189:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.8026428222656	2	489.784567	977.554582	1.878	0.0009198	0.1892	9.2669E-05	2.0672	0.0010125	489.78451476505006	24.792	0.60695	24.611	24.418	25.025	-0.18089					21	13	2	0	0	0	0.027866	1	1116	1116		71.378	0	1	54052	+		39080	34225	26849	26902	44596	44596					0.06490644448626881
LEQKLHWN	8	Unmodified	_LEQKLHWN_					0	0	0		DRAM2|p.D199E|1|0.08|ENSG00000156171|chr1:111119880-111119880|G/T|missense_variant;ENST00000477769.1_1_1:111662258-111663219:-|nuORF;ENST00000477588.5_1_1:111661309-111663177:-|nuORF;ENSG00000156171|ENST00000484310|DRAM2	DRAM2|p.D199E|1|0.08|ENSG00000156171|chr1:111119880-111119880|G/T|missense_variant	DRAM2|p.D199E|1|0.08|ENSG00000156171|chr1:111119880-111119880|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2844848632812	2	534.285266	1066.55598	-0.34549	-0.00018459	-0.35975	-0.00019221	-0.70524	-0.0003768	534.2854367620389	105.78	1.0462	105.77	105.28	106.33	-0.0013199					80	36	3	0	0	0	1.0284	1	13527	13527		32.812	4.9302	1	240410			39081	670	26850	26903	44597	44597					0.025362785373772567
LEQKLLCK	8	Unmodified	_LEQKLLCK_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A;nc|ENSG00000130038|Q9BSW2-1|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7908020019531	2	487.788795	973.563038	0.56547	0.00027583	3.1477	0.0015354	3.7132	0.0018113	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	1.043	1	10143	10143		30.504	0	1	2408700			39082	4381	26851	26904	44598	44598					0.0751987509358969
LEQKRNLLS	9	Unmodified	_LEQKRNLLS_					0	0	0		ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.8245239257812	2	550.824755	1099.63496	-0.32294	-0.00017788	0.2557	0.00014085	-0.067239	-3.7037E-05	550.8247959769899	36.466	0.88967	36.261	35.987	36.877	-0.20518					58	22	4	0	0	0	0.082191	1	2868	2868		116.9	0	1	2883000			39083	3229	26852	26905	44599	44599					0.0891250577167284
LEQKTGFAF	9	Unmodified	_LEQKTGFAF_					0	0	0		ENSG00000233932|ENST00000417307|CTXN2	ENSG00000233932|ENST00000417307|CTXN2	ENSG00000233932|ENST00000417307|CTXN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7549438476562	2	520.7742	1039.53385	0.112	5.8327E-05	-3.6584	-0.0019052	-3.5464	-0.0018469	520.7722665121316	24.16	0.68413	23.985	23.656	24.34	-0.17484					26	15	3	0	0	0	0.024457	1	997	997		15.642	0.97771	1	83983			39084	10715	26853	26906	44600	44600					0.015660540689623303
LEQKTGFAF	9	Unmodified	_LEQKTGFAF_					0	0	0		ENSG00000233932|ENST00000417307|CTXN2	ENSG00000233932|ENST00000417307|CTXN2	ENSG00000233932|ENST00000417307|CTXN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.7742	1039.53385	-0.29147	-0.00015179	-3.613	-0.0018815	-3.9044	-0.0020333	520.7721910436547	24.371	0.64016	24.156	23.778	24.418	-0.2151	0.11867	0.00061371	NaN	10.265	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123830			39085	10715	26853	26906							0.015660540689623303
LEQKTGFAF	9	Unmodified	_LEQKTGFAF_					0	0	0		ENSG00000233932|ENST00000417307|CTXN2	ENSG00000233932|ENST00000417307|CTXN2	ENSG00000233932|ENST00000417307|CTXN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.7742	1039.53385	2.0979	0.0010925	-6.0477	-0.0031495	-3.9498	-0.002057	520.7708675441366	24.152	0.61466	23.971	23.671	24.285	-0.18089	-0.066126	-0.0019222	NaN	10.265	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85709			39086	10715	26853	26906							0.015660540689623303
LEQLINIPSVT	11	Unmodified	_LEQLINIPSVT_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5702819824219	3	409.571211	1225.6918	0.57597	0.0002359	-2.9051	-0.0011898	-2.3291	-0.00095394	409.5700316746526	32.044	1.1631	32.107	31.799	32.962	0.062885					92	29	5	0	0	0	0.97559	1	2126	2126		42.243	1.1625	1	5773500	+		39087	19929	26854	26907	44601	44601					0.08798508537506677
LEQLLELN	8	Unmodified	_LEQLLELN_					0	0	0			REV__TOM1|p.D250N|1|0.13|ENSG00000100284|chr22:35327370-35327370|G/A|missense_variant	REV__TOM1|p.D250N|1|0.13|ENSG00000100284|chr22:35327370-35327370|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.3051452636719	2	486.274032	970.533512	-0.11653	-5.6667E-05	0.022165	1.0778E-05	-0.094367	-4.5888E-05	486.2738393220964	75.635	1.4481	75.645	75.326	76.774	0.010368					47	37	2	0	0	0	0.027866	1	9224	9224		15.642	0	1	372450	+		39088	37717	26855	26908	44602	44602					0.04706634349099659
LEQLLQKLD	9	Unmodified	_LEQLLQKLD_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0|CCDC158	REV__nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.3369140625	2	550.321514	1098.62847	-0.093204	-5.1292E-05	-0.81352	-0.0004477	-0.90673	-0.00049899	550.3211496192314	68.448	0.56805	68.467	68.158	68.726	0.018913					19	14	2	0	0	0	0.024257	1	8151	8151		49.536	0	1	97889	+		39089	25629	26856	26909	44603	44603					0.08310567820285542
LEQLQRET	8	Unmodified	_LEQLQRET_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.277099609375	2	508.772188	1015.52982	-0.36652	-0.00018647	1.7749	0.00090304	1.4084	0.00071656	508.7719296100509	33.808	1.2357	33.803	33.178	34.414	-0.0045624					85	32	4	0	0	0	0.89627	1	2488	2488		51.335	0	1	6076200	+		39090	23795	26857	26910	44604	44604					0.022679645752418764
LEQLRGKAS	9	Unmodified	_LEQLRGKAS_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29034423828125	2	501.290548	1000.56654	0.41475	0.00020791	-0.66528	-0.0003335	-0.25053	-0.00012559	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	0.91321	1	10206	10206		31.53	1.0262	1	2920800			39091	8463	26858	26911	44605	44605					0.06628261191804086
LEQLYQWA	8	Unmodified	_LEQLYQWA_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2901611328125	2	525.766374	1049.5182	-0.76106	-0.00040014	-0.33641	-0.00017687	-1.0975	-0.00057701	525.7660643191637	33.334	3.1602	33.34	31.658	34.818	0.0066261					183	82	3	0	0	0	0.027866	1	2429	2429		25.45	0	1	1690600			39092	980	26859	26912	44606	44606					-0.004582324480907118
LEQLYQWA	8	Unmodified	_LEQLYQWA_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.766374	1049.5182	-0.35815	-0.00018831	0.50951	0.00026788	0.15135	7.9576E-05	525.7660082102028	33.476	1.9671	33.245	31.788	33.755	-0.23107	-0.077526	0.00087456	NaN	33.516	93	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589740			39093	980	26859	26912							-0.004582324480907118
LEQLYQWA	8	Unmodified	_LEQLYQWA_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.766374	1049.5182	-0.35411	-0.00018618	0.032511	1.7093E-05	-0.3216	-0.00016909	525.7659656565481	33.393	2.1273	33.193	31.589	33.717	-0.20019	-0.12972	0.00037298	NaN	33.516	84	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580430			39094	980	26859	26912							-0.004582324480907118
LEQLYQWA	8	Unmodified	_LEQLYQWA_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.766374	1049.5182	-0.89147	-0.0004687	0.38168	0.00020068	-0.50978	-0.00026803	525.7661797440417	33.4	1.9816	33.234	31.77	33.752	-0.16565	-0.088754	0.00074015	NaN	33.516	89	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660510			39095	980	26859	26912							-0.004582324480907118
LEQMAGPPDL	10	Unmodified	_LEQMAGPPDL_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7658081054688	2	535.762975	1069.5114	-0.67408	-0.00036115	-2.9613	-0.0015866	-3.6354	-0.0019477	535.7608671932142	49.282	0.9142	49.13	48.829	49.743	-0.15277					35	24	2	0	0	0	0.03519	1	5075	5075		75.043	27.386	1	952780	+		39096	22897	26860	26913	44607	44607					-0.020579133909905067
LEQNKKMN	8	Unmodified	_LEQNKKMN_					0	0	0		ENSG00000169641|ENST00000302291|LUZP1;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.26959228515625	2	502.763309	1003.51206	-0.77345	-0.00038886	2.564	0.0012891	1.7906	0.00090023	502.76443402786634	39.981	0.30819	39.751	39.66	39.968	-0.23021					12	7	2	0	0	0	0.027866	1	3397	3397		24.203	0	1	364330			39097	7961	26861	26914	44608	44608					0.01044926048734851
LEQNKKMN	8	Unmodified	_LEQNKKMN_					0	0	0		ENSG00000169641|ENST00000302291|LUZP1;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.763309	1003.51206	-0.73998	-0.00037203	0.79525	0.00039982	0.05527	2.7788E-05	502.76384625734295	39.959	0.28948	39.982	39.873	40.162	0.023006	0.14968	-0.00060072	NaN	37.159	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748300			39098	7961	26861	26914							0.01044926048734851
LEQPALQLE	9	Unmodified	_LEQPALQLE_					0	0	0		ENST00000348261.10_1_16:1257291-1259156:+|nuORF	ENST00000348261.10_1_16:1257291-1259156:+|nuORF	ENST00000348261.10_1_16:1257291-1259156:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7844848632812	2	520.784764	1039.55498	-0.17121	-8.9164E-05	-0.92176	-0.00048004	-1.093	-0.0005692	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	0.91321	1	13599	13599		31.53	0	1	7199700			39099	12578	26862	26915	44609	44609					0.03678019377821329
LEQPRVQRLL	10	Unmodified	_LEQPRVQRLL_					0	0	0			REV__nc|ENSG00000137693|P46937-3|YAP1	REV__nc|ENSG00000137693|P46937-3|YAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.9224548339844	3	417.922578	1250.7459	0.13055	5.4558E-05	-0.96193	-0.00040201	-0.83138	-0.00034745	417.9221244956388	104.43	1.2023	104.31	103.74	104.94	-0.12561					97	33	4	0	0	0	1.1277	1	12990	12990		25.126	1.7481	1	2252700	+		39100	36702	26863	26916	44610	44610					0.13056145479754377
LEQQRVGLAI	10	Unmodified	_LEQQRVGLAI_					0	0	0		ENSG00000271383|ENST00000651566|NBPF19;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000271425|ENST00000583866|NBPF10	ENSG00000271383|ENST00000651566|NBPF19	ENSG00000271383|ENST00000651566|NBPF19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.72216796875	2	563.83258	1125.65061	0.035898	2.024E-05	3.0314	0.0017092	3.0673	0.0017294	563.8342891382474	49.612	0.49777	49.332	49.123	49.621	-0.27977					27	12	3	0	0	0	0.03519	1	4983	4983		20.947	0	1	436420			39101	11007	26864	26917	44611	44611					0.09280792288700468
LEQQVKLYI	9	Unmodified	_LEQQVKLYI_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.330078125	2	567.331882	1132.64921	0.053871	3.0563E-05	-3.2004	-0.0018157	-3.1465	-0.0017851	567.3299406004519	88.124	1.3605	87.986	87.038	88.398	-0.13744					93	32	4	0	0	0	0.94779	1	10702	10702		29.17	2.4771	1	1828400	+		39102	22084	26865	26918	44612	44612					0.0881915819995811
LEQRKAEL	8	Unmodified	_LEQRKAEL_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7850341796875	2	493.785099	985.555644	-0.58403	-0.00028839	-0.2377	-0.00011737	-0.82173	-0.00040576	493.78497956063717	27.472	1.4359	27.23	26.488	27.924	-0.24217					79	33	6	0	0	0	0.56592	2	1528	1508;1528		79.451	0	1	5263700	+		39103	19944	26866	26919	44613;44614	44614					0.06228858817530636
LEQRKAEL	8	Unmodified	_LEQRKAEL_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.78485107421875	2	493.785099	985.555644	-0.51995	-0.00025675	-0.17083	-8.4352E-05	-0.69078	-0.0003411	493.7849854693808	27.319	1.0362	27.151	26.851	27.887	-0.16816					79	24	6	0	0	0	0.38451	3	1517	1482;1491;1517		99.375	0	1	4233900	+		39104	19944	26866	26919	44615;44616;44617	44617					0.06228858817530636
LEQRKAEL	8	Unmodified	_LEQRKAEL_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7847900390625	2	493.785099	985.555644	-0.16765	-8.2781E-05	-0.49274	-0.00024331	-0.66039	-0.00032609	493.78483325201876	27.471	1.4147	27.315	26.503	27.918	-0.15664					77	33	5	0	0	0	0.6248	1	1491	1491		73.975	0	1	4793900	+		39105	19944	26866	26919	44618	44618					0.06228858817530636
LEQRKKRA	8	Unmodified	_LEQRKKRA_					0	0	0			REV__ENST00000436075.1_1_22:20837457-20837766:-|nuORF	REV__ENST00000436075.1_1_22:20837457-20837766:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7960205078125	2	514.819807	1027.62506	-0.34495	-0.00017759	3.0728	0.0015819	2.7278	0.0014043	514.8212339281325	23.356	0.90939	23.176	22.697	23.607	-0.17989					46	20	3	0	0	0	0.027866	1	967	967		60.294	1.512	1	765050	+		39106	32458	26867	26920	44619	44619					0.11235362556953987
LEQRLQQN	8	Unmodified	_LEQRLQQN_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8028564453125	2	514.777805	1027.54106	0.17431	8.9731E-05	-3.8131	-0.0019629	-3.6388	-0.0018732	515.2768564572932	59.628	0.39592	59.379	59.252	59.648	-0.24842					12	9	2	0	0	0	0.027866	1	6612	6612		39.253	0	1	93440	+		39107	22195	26868	26921	44620	44620					0.028387866693947217
LEQRPQEISL	10	Unmodified	_LEQRPQEISL_					0	0	0		nc|ENSG00000119865|Q96F85-2|CNRIP1	nc|ENSG00000119865|Q96F85-2|CNRIP1	nc|ENSG00000119865|Q96F85-2|CNRIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.8328247070312	2	606.832777	1211.651	-1.6075	-0.00097546	1.1425	0.00069329	-0.46499	-0.00028217	606.8334984516033	54.608	1.2151	54.608	54.249	55.464	0					109	34	5	0	0	0	0.56936	1	6010	6010		80.455	0.96554	1	26024000			39108	18213	26869	26922	44621	44621					0.05364167217931026
LEQRQLVNLL	10	Unmodified	_LEQRQLVNLL_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.2469787597656	3	409.24695	1224.71902	0.42019	0.00017196	-0.72753	-0.00029774	-0.30734	-0.00012578	409.2466928399336	37.663	1.5127	37.696	37.303	38.815	0.032269					135	41	5	0	0	0	0.65849	1	3056	3056		70.399	6.9721	1	9816200	+		39109	28522	26870	26923	44622	44622					0.11565036868569223
LEQSLSSHT	9	Unmodified	_LEQSLSSHT_					0	0	0			REV__ENSG00000179071|ENST00000316398|CCDC89	REV__ENSG00000179071|ENST00000316398|CCDC89	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2505187988281	2	501.248546	1000.48254	-0.89121	-0.00044672	1.1125	0.00055762	0.22124	0.0001109	501.24901476838613	105.51	0.90276	105.38	104.97	105.88	-0.13099					58	32	2	0	0	0	0.94809	1	13112	13112		29.15	2.3535	1	802850	+		39110	27235	26871	26924	44623	44623					-0.01768314695743811
LEQTPMDLV	9	Unmodified	_LEQTPMDLV_					0	0	0			REV__ENSG00000104835|ENST00000221431|SARS2	REV__ENSG00000104835|ENST00000221431|SARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3033447265625	2	523.26535	1044.51615	0.56906	0.00029777	0.41608	0.00021772	0.98515	0.00051549	523.2663975977973	87.427	0.63377	87.291	86.968	87.602	-0.13613					21	14	2	0	0	0	0.024427	1	10647	10647		34.173	3.6689	1	115130	+		39111	21469	26872	26925	44624	44624					-0.004330292482336517
LEQVADVSD	9	Unmodified	_LEQVADVSD_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7906799316406	2	488.235104	974.455655	0.42672	0.00020834	0.21709	0.00010599	0.64382	0.00031433	488.2350888724854	83.611	0.67625	83.473	83.168	83.844	-0.13861					22	15	2	0	0	0	0.024288	1	10092	10092		52.937	34.675	1	137720	+		39112	25290	26873	26926	44625	44625					-0.032594233069403344
LEQVIAKDLLP	11	Unmodified	_LEQVIAKDLLP_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8694458007812	2	619.871371	1237.72819	-1.6623	-0.0010304	-1.675	-0.0010383	-3.3373	-0.0020687	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	0.98542	1	11434	11434		40.058	8.5284	1	1925500			39113	8170	26874	26927	44626	44626					0.11883385434225602
LEQVIAKDLLP	11	Unmodified	_LEQVIAKDLLP_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8696899414062	2	619.871371	1237.72819	0.12405	7.6895E-05	-3.5353	-0.0021914	-3.4113	-0.0021145	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0075	1	11456	11456		35.152	0	1	1596200			39114	8170	26874	26927	44627	44627					0.11883385434225602
LEQVIAKDLLP	11	Unmodified	_LEQVIAKDLLP_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.869384765625	2	619.871371	1237.72819	-0.13269	-8.2249E-05	-2.9862	-0.001851	-3.1189	-0.0019333	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0238	1	11830	11830		31.53	2.3598	1	4730400			39115	8170	26874	26927	44628	44628					0.11883385434225602
LEQVIHCIL	9	Unmodified	_LEQVIHCIL_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2708129882812	2	534.299527	1066.5845	-1.2686	-0.0006778	-2.0604	-0.0011009	-3.329	-0.0017787	534.298279645739	51.893	0.68455	51.985	51.72	52.404	0.091938					41	17	3	0	0	0	0.024325	1	5507	5507		50.025	9.4519	1	1894000	+		39116	26221	26875	26928	44629	44629					0.053872601223019956
LEQYFIQQGG	10	Unmodified	_LEQYFIQQGG_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;ENST00000478695.1_1_2:15763675-15767284:+|nuORF;ENST00000470674.1_1_2:15763561-15768670:+|nuORF;nc|ENSG00000079785|Q92499-2|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.7883911132812	2	591.793121	1181.57169	-0.87469	-0.00051763	0.41868	0.00024777	-0.45601	-0.00026986	591.7932907059242	52.706	0.47298	52.448	52.21	52.683	-0.25838					21	11	2	0	0	0	0.03519	1	5473	5473		27.882	0	1	458820			39117	1674	26876	26929	44630	44630					-0.011834797362325844
LERAAAVAHL	10	Unmodified	_LERAAAVAHL_					0	0	0			REV__ENSG00000111252|ENST00000341259|SH2B3	REV__ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.8059692382812	2	525.806365	1049.59818	-0.45981	-0.00024177	0.030631	1.6106E-05	-0.42918	-0.00022566	525.8062749114689	46.872	0.56812	46.719	46.41	46.978	-0.15301					48	14	4	0	0	0	0.60198	1	4648	4648		76.774	5.4784	1	2126300	+		39118	21903	26877	26930	44631	44631					0.07536253945750104
LERAAGPR	8	Unmodified	_LERAAGPR_					0	0	0		ENST00000257359.6_1_11:130297588-130298293:-|nuORF	ENST00000257359.6_1_11:130297588-130298293:-|nuORF	ENST00000257359.6_1_11:130297588-130298293:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.25152587890625	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	0.95679	2	9690	9690;9748		44.117	6.9577	1	1708300			39119	11405	26878	26931	44632;44633	44632					0.04839453677379879
LERAAGPR	8	Unmodified	_LERAAGPR_					0	0	0		ENST00000257359.6_1_11:130297588-130298293:-|nuORF	ENST00000257359.6_1_11:130297588-130298293:-|nuORF	ENST00000257359.6_1_11:130297588-130298293:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2515563964844	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0574	1	9561	9561		25.45	0	1	2292300			39120	11405	26878	26931	44634	44634					0.04839453677379879
LERAASTI	8	Unmodified	_LERAASTI_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000469778.1_1_9:94794749-94800706:-|nuORF	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.226318359375	2	430.745442	859.476331	0.14406	6.2053E-05	-0.31908	-0.00013744	-0.17502	-7.5391E-05	430.7451770586787	45.406	0.46014	45.153	44.865	45.325	-0.25252					23	12	3	0	0	0	0.027866	1	4290	4290		10.265	0	1	267360			39121	1921	26879	26932	44635	44635					0.04097211863393113
LERADLSGSV	10	Unmodified	_LERADLSGSV_					0	0	0		ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3093872070312	2	523.77747	1045.54039	0.75415	0.00039501	3.7522	0.0019653	4.5064	0.0023603	523.7795682222932	71.171	0.63002	70.965	70.79	71.42	-0.20613					24	14	3	0	0	0	0.03519	1	8337	8337		39.253	12.56	1	225480			39122	2595	26880	26933	44636	44636					0.019439472296880922
LERAEQVHC	9	Unmodified	_LERAEQVHC_					0	0	0		ENST00000485631.1_1_22:18189563-18209453:+|nuORF	ENST00000485631.1_1_22:18189563-18209453:+|nuORF	ENST00000485631.1_1_22:18189563-18209453:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2442016601562	2	542.76384	1083.51313	0.41968	0.00022779	0.013443	7.2961E-06	0.43312	0.00023508	542.7637142845027	67.727	0.38121	67.472	67.279	67.661	-0.25516					12	8	2	0	0	0	0.024374	1	7775	7775		40.778	14.085	1	124740			39123	15330	26881	26934	44637	44637					-0.02528859582344012
LERAETHKS	9	Unmodified	_LERAETHKS_					0	0	0			REV__nc|ENSG00000239857|Q7L5D6-2|GET4	REV__nc|ENSG00000239857|Q7L5D6-2|GET4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2476806640625	2	535.783087	1069.55162	-0.47402	-0.00025397	3.8928	0.0020857	3.4188	0.0018317	535.7851322556604	73.068	0.72022	72.791	72.454	73.174	-0.2769					24	16	2	0	0	0	0.024515	1	8625	8625		28.081	1.2854	1	536520	+		39124	28956	26882	26935	44638	44638					0.01962769323813518
LERAETHKS	9	Unmodified	_LERAETHKS_					0	0	0			REV__nc|ENSG00000239857|Q7L5D6-2|GET4	REV__nc|ENSG00000239857|Q7L5D6-2|GET4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.783087	1069.55162	-0.59262	-0.00031752	3.6944	0.0019794	3.1018	0.0016619	535.7852585530826	73.04	0.67014	72.775	72.469	73.139	-0.26479	0.029055	-0.00025092	NaN	28.081	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514650	+		39125	28956	26882	26935							0.01962769323813518
LERAETHKS	9	Unmodified	_LERAETHKS_					0	0	0			REV__nc|ENSG00000239857|Q7L5D6-2|GET4	REV__nc|ENSG00000239857|Q7L5D6-2|GET4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.783087	1069.55162	-0.97247	-0.00052103	4.1346	0.0022153	3.1622	0.0016942	535.7854490412648	72.87	0.6299	72.671	72.33	72.96	-0.1981	-0.074372	0.00022078	NaN	28.081	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486680	+		39126	28956	26882	26935							0.01962769323813518
LERAGARP	8	Unmodified	_LERAGARP_					0	0	0			REV__ENSG00000142330|ENST00000391984|CAPN10;REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	REV__ENSG00000142330|ENST00000391984|CAPN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2522277832031	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	0.99042	3	9917	9648;9891;9917		38.806	1.647	1	1708300	+		39127	24151;36728	26883	26936	44639;44640;44641	44641					0.04839453677379879
LERAQARLD	9	Unmodified	_LERAQARLD_					0	0	0			REV__ENST00000505350.1_1_5:112043276-112043366:+|nuORF	REV__ENST00000505350.1_1_5:112043276-112043366:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3114013671875	2	536.298904	1070.58326	-0.82352	-0.00044165	-0.59941	-0.00032147	-1.4229	-0.00076312	536.2981222013673	34.53	0.49765	34.53	34.209	34.706	0					14	12	2	0	0	0	0.024397	1	2586	2586		24.519	0	1	157700	+		39128	34010	26884	26937	44642	44642					0.050787620777555276
LERASTELD	9	Unmodified	_LERASTELD_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2714233398438	2	517.261653	1032.50875	-0.67297	-0.0003481	-2.451	-0.0012678	-3.124	-0.0016159	517.761444501128	49.161	0.68793	49.06	48.689	49.377	-0.1008					48	17	4	0	0	0	0.023837	1	4900	4900		54.776	16.965	1	867060	+		39129	25619	26885	26938	44643	44643					-0.006200455242833414
LERDLERVVI	10	Unmodified	_LERDLERVVI_					0	0	0			REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.8809814453125	3	414.578588	1240.71394	-0.02512	-1.0414E-05	0.067915	2.8156E-05	0.042795	1.7742E-05	414.5785418013719	29.307	0.42064	29.157	28.956	29.377	-0.14952					21	9	3	0	0	0	0.03519	1	1738	1738		11.097	5.0957	1	148510	+		39130	28106	26886	26939	44644	44644					0.10320733005937655
LEREIPRA	8	Unmodified	_LEREIPRA_					0	0	0		ENSG00000140955|ENST00000315906|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.21087646484375	2	492.285266	982.555979	-0.67181	-0.00033072	-4.4732	-0.0022021	-5.145	-0.0025328	492.28332563538333	49.274	1.5514	49.174	48.726	50.278	-0.1008					107	40	4	0	0	0	0.027866	1	4978	4978		19.104	3.4617	1	1137800			39131	5455	26887	26940	44645	44645					0.06400278537375925
LEREKKLM	8	Unmodified	_LEREKKLM_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.8212280273438	2	523.804977	1045.5954	-0.34439	-0.00018039	-3.6229	-0.0018977	-3.9672	-0.0020781	523.8028957506084	49.207	0.58406	48.927	48.465	49.049	-0.27977					19	15	2	0	0	0	0.027866	1	4849	4849		68.787	2.3575	1	98367	+		39132	26616	26888	26941	44646	44646					0.07442662496578123
LEREKKLM	8	Unmodified	_LEREKKLM_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.8209228515625	2	523.804977	1045.5954	-0.40773	-0.00021357	-3.4045	-0.0017833	-3.8122	-0.0019969	523.8029815036514	47.903	0.65898	47.627	47.492	48.151	-0.27598					22	17	2	0	0	0	0.027866	1	4786	4786		79.451	13.022	1	151500	+		39133	26616	26888	26941	44647	44647					0.07442662496578123
LEREKKLM	8	Unmodified	_LEREKKLM_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.804977	1045.5954	-0.46261	-0.00024232	-3.0069	-0.001575	-3.4695	-0.0018174	523.8033156968141	47.575	0.57987	47.478	47.35	47.93	-0.096886	-0.074338	0.00014393	NaN	79.451	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112500	+		39134	26616	26888	26941							0.07442662496578123
LERFDHSPTPS	11	Unmodified	_LERFDHSPTPS_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.78466796875	3	429.210565	1284.60986	-0.18783	-8.062E-05	3.6502	0.0015667	3.4624	0.0014861	429.2126272817243	26.894	0.41997	26.652	26.45	26.869	-0.24217					13	9	2	0	0	0	0.024801	1	1424	1424		8.7993	4.9559	1	48048			39135	4835	26889	26942	44648	44648					-0.021055938215795322
LERFHAIN	8	Unmodified	_LERFHAIN_					0	0	0			REV__nc|ENSG00000144559|Q96BW9|TAMM41	REV__nc|ENSG00000144559|Q96BW9|TAMM41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7660217285156	2	500.272158	998.529764	0.085381	4.2714E-05	0.57749	0.0002889	0.66287	0.00033161	500.7741912037527	41.571	0.42393	41.594	41.394	41.818	0.023003					15	11	2	0	0	0	0.027866	1	3732	3732		53.351	0	1	129780	+		39136	36748	26890	26943	44649	44649					0.03044009365896727
LERFMCLL	8	Unmodified	_LERFMCLL_					0	0	0		ENST00000490191.5_1_6:33240007-33240325:+|nuORF	ENST00000490191.5_1_6:33240007-33240325:+|nuORF	ENST00000490191.5_1_6:33240007-33240325:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2880859375	2	512.769548	1023.52454	-0.24998	-0.00012818	-1.3346	-0.00068437	-1.5846	-0.00081255	512.768645816763	56.061	2.5385	55.905	55.126	57.665	-0.15601					131	69	4	0	0	0	0.027866	1	6137	6137		85.359	25.241	1	1656900			39137	15429	26891	26944	44650	44650					0.013722461874294822
LERFMCLL	8	Unmodified	_LERFMCLL_					0	0	0		ENST00000490191.5_1_6:33240007-33240325:+|nuORF	ENST00000490191.5_1_6:33240007-33240325:+|nuORF	ENST00000490191.5_1_6:33240007-33240325:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.769548	1023.52454	-0.79282	-0.00040653	0.24023	0.00012318	-0.55259	-0.00028335	512.7695019193117	55.958	0.4009	55.802	55.572	55.972	-0.15656	-0.04922	0.0011218	NaN	85.359	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508810			39138	15429	26891	26944							0.013722461874294822
LERFMCLL	8	Unmodified	_LERFMCLL_					0	0	0		ENST00000490191.5_1_6:33240007-33240325:+|nuORF	ENST00000490191.5_1_6:33240007-33240325:+|nuORF	ENST00000490191.5_1_6:33240007-33240325:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.769548	1023.52454	-0.011452	-5.8722E-06	0.24293	0.00012456	0.23147	0.00011869	512.7694743904892	56.048	0.40521	55.832	55.633	56.038	-0.21607	-0.019046	0.0011245	NaN	85.359	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457490			39139	15429	26891	26944							0.013722461874294822
LERFQPLTTWC	11	Unmodified	_LERFQPLTTWC_					0	0	0			REV__ENSG00000154764|ENST00000285018|WNT7A	REV__ENSG00000154764|ENST00000285018|WNT7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.90081787109375	3	465.235945	1392.68601	0.080241	3.7331E-05	-3.2451	-0.0015098	-3.1649	-0.0014724	465.2346655405832	20.29	1.1659	20.123	19.522	20.688	-0.16774					46	23	4	0	0	0	0.024734	1	523	523		34.087	5.5098	1	933440	+		39140	24974	26892	26945	44651	44651					0.005370867542069391
LERGECCVTCY	11	Unmodified	_LERGECCVTCY_					0	0	0			REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7748107910156	3	425.843731	1274.50936	-0.79726	-0.00033951	3.6461	0.0015527	2.8488	0.0012131	426.1790828837828	43.116	0.29394	43.116	43.002	43.296	0					9	7	2	0	0	0	0.024751	1	4033	4033		41.08	12.503	1	44423	+		39141	20810	26893	26946	44652	44652					-0.11691033462716405
LERGRLAM	8	Unmodified	_LERGRLAM_					0	0	0		CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1;nc|ENSG00000134376|P82279-4|CRB1	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.26922607421875	2	473.268561	944.52257	0.50697	0.00023994	0.55516	0.00026274	1.0621	0.00050268	473.26873344727943	26.762	0.93166	26.762	26.283	27.215	0					29	22	2	0	0	0	0.94517	1	1394	1394		45.952	5.3793	1	702730			39142	584	26894	26947	44653	44653					0.04808953493829904
LERHHLEF	8	Unmodified	_LERHHLEF_					0	0	0		nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000133256|ENST00000496514|PDE6B;ENST00000508173.5_1_5:149240460-149276122:-|nuORF;nc|ENSG00000133256|P35913-3|PDE6B;ENSG00000132915|ENST00000255266|PDE6A	nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000132915|ENST00000255266|PDE6A	ENSG00000132915|ENST00000255266|PDE6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.8001708984375	2	540.78289	1079.55123	-2.0864	-0.0011283	1.8449	0.00099769	-0.2415	-0.0001306	540.7837245274771	33.774	1.2192	33.598	33.352	34.571	-0.17557					57	30	3	0	0	0	0.027866	1	2521	2521		28.254	11.781	1	879110			39143	4697;4662	26895	26948	44654	44654					0.014633943946137151
LERILESR	8	Unmodified	_LERILESR_					0	0	0			REV__ENST00000473645.6_2_3:167443219-167452692:-|nuORF	REV__ENST00000473645.6_2_3:167443219-167452692:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7641296386719	2	508.298373	1014.58219	-1.1978	-0.00060882	0.75291	0.0003827	-0.44484	-0.00022611	508.29870615585634	22.022	0.43511	22.093	21.879	22.314	0.071487					21	8	3	0	0	0	0.027866	1	710	710		31.955	0	1	99978	+		39144	33243	26896	26949	44655	44655					0.07548547708859132
LERKAQEL	8	Unmodified	_LERKAQEL_					0	0	0			REV__nc|ENSG00000257923|P39880-4|CUX1	REV__nc|ENSG00000257923|P39880-4|CUX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7851867675781	2	493.785099	985.555644	-0.51995	-0.00025675	-0.17083	-8.4352E-05	-0.69078	-0.0003411	493.7849854693808	27.319	1.0362	27.151	26.851	27.887	-0.16816					79	24	6	0	0	0	0.44658	1	1503	1503		90.777	0	1	4233900	+		39145	29093	26897	26950	44656	44656					0.06228858817530636
LERKEKQY	8	Unmodified	_LERKEKQY_					0	0	0		nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P;nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1	nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P	nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.303466796875	2	547.303655	1092.59276	0.84905	0.00046469	-1.2924	-0.00070736	-0.44339	-0.00024267	547.3029455906837	37.138	0.78622	37.138	36.846	37.632	0					62	20	5	0	0	0	0.74904	1	3018	3018		63.306	1.615	1	8090700			39146	10944	26898	26951	44657	44657					0.0501653036328662
LERKRPAS	8	Unmodified	_LERKRPAS_					0	0	0		ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENST00000575412.1_1_16:24953198-24955137:-|nuORF	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;ENST00000575412.1_1_16:24953198-24955137:-|nuORF	ARHGAP17|p.S762Qfs*22|1|0.1|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.78521728515625	2	478.785433	955.556313	0.41235	0.00019743	-0.4463	-0.00021368	-0.033952	-1.6256E-05	478.78517028501756	91.36	2.0991	91.221	90.863	92.962	-0.13941					79	49	4	0	0	0	1.0009	1	11169	11169		37.159	1.5408	1	2115600			39147	120;17098	26899	26952	44658	44658					0.07675698257230579
LERKTKQNQ	9	Unmodified	_LERKTKQNQ_					0	0	0		ENST00000513321.1_1_4:178274466-178274907:+|nuORF;ENSG00000109674|ENST00000264596|NEIL3	ENST00000513321.1_1_4:178274466-178274907:+|nuORF	ENST00000513321.1_1_4:178274466-178274907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.8504638671875	2	572.825286	1143.63602	0.0023997	1.3746E-06	0.55958	0.00032054	0.56197	0.00032191	572.825655280198	18.143	0.14869	17.937	17.863	18.011	-0.20669					4	2	2	0	0	0	0.015112	1	268	268		122.18	0	1	6928.5			39148	2988	26900	26953	44659	44659					0.06994720140573918
LERKYAALY	9	Unmodified	_LERKYAALY_					0	0	0		ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	ENSG00000205531|ENST00000380542|NAP1L4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7218017578125	2	563.816399	1125.61824	0.28327	0.00015971	-0.14464	-8.1553E-05	0.13863	7.8161E-05	563.8160001387389	49.817	0.44307	49.637	49.458	49.901	-0.18071					19	11	2	0	0	0	0.024541	1	5022	5022		24.203	0	1	208290			39149	10433	26901	26954	44660	44660					0.060460048857066795
LERLFDLA	8	Unmodified	_LERLFDLA_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2375183105469	2	488.776742	975.538931	-0.20805	-0.00010169	0.32381	0.00015827	0.11576	5.6582E-05	488.7766984862543	34.667	1.1191	34.46	34.16	35.279	-0.20695					59	27	4	0	0	0	0.027866	1	2669	2669		45.952	5.3793	1	1247800			39150	9730	26902	26955	44661	44661					0.050183579315557836
LERLKRRIE	9	Unmodified	_LERLKRRIE_					0	0	0			REV__ENSG00000166681|ENST00000361298|BEX3	REV__ENSG00000166681|ENST00000361298|BEX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.923095703125	3	404.922689	1211.74624	-0.22601	-9.1516E-05	-0.11784	-4.7715E-05	-0.34385	-0.00013923	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	0.94779	1	1385	1385		29.17	0	1	42722000	+		39151	26042	26903	26956	44662	44662					0.14883565199579607
LERLLGFGF	9	Unmodified	_LERLLGFGF_					0	0	0		ENST00000372397.6_1_X:106960162-106960288:-|nuORF	ENST00000372397.6_1_X:106960162-106960288:-|nuORF	ENST00000372397.6_1_X:106960162-106960288:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.263916015625	2	526.300384	1050.58622	-0.83042	-0.00043705	-2.2265	-0.0011718	-3.0569	-0.0016088	526.2988334948161	48.225	1.0285	48.072	47.476	48.505	-0.15301					61	30	3	0	0	0	0.024381	1	4929	4929		37.159	0	1	984070			39152	13038	26904	26957	44663	44663					0.06294637202586273
LERLLQPW	8	Unmodified	_LERLLQPW_					0	0	0			REV__ENST00000477995.1_1_6:170176000-170181606:+|nuORF	REV__ENST00000477995.1_1_6:170176000-170181606:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.263916015625	2	527.805834	1053.59712	-0.76353	-0.000403	-1.5434	-0.0008146	-2.3069	-0.0012176	527.8045691131999	48.621	0.74488	48.468	48.261	49.006	-0.15277					22	20	2	0	0	0	0.027866	1	4929	4929		33.516	4.366	1	206350	+		39153	23072	26905	26958	44664	44664					0.07246039576853036
LERLLRTT	8	Unmodified	_LERLLRTT_					0	0	0			REV__ENSG00000166164|ENST00000394688|BRD7;REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.29046630859375	2	501.308741	1000.60293	0.18069	9.0579E-05	1.375	0.00068927	1.5556	0.00077985	501.30908979681317	85.185	0.29315	85.048	84.948	85.241	-0.13752					13	6	3	0	0	0	0.027866	1	10320	10320		12.959	0	1	53757	+		39154	25982;33022	26906	26959	44665	44665					0.10265138088516323
LERLPGKP	8	Unmodified	_LERLPGKP_					0	0	0			REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.27838134765625	2	455.279452	908.544351	1.0861	0.00049447	-4.1195	-0.0018755	-3.0335	-0.0013811	455.27737334065375	18.179	0.34304	18.022	17.854	18.197	-0.15637					14	6	3	0	0	0	1.0574	1	277	277		20.482	1.1219	1	103280	+		39155	33464	26907	26960	44666	44666					0.08642081514040001
LERLPGKP	8	Unmodified	_LERLPGKP_					0	0	0			REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	455.279452	908.544351	1.0861	0.00049447	-4.1195	-0.0018755	-3.0335	-0.0013811	455.27737334065375	18.179	0.34304	18.022	17.854	18.197	-0.15637	0.023495	-0.00079634	NaN	20.482	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103280	+		39156	33464	26907	26960							0.08642081514040001
LERLPGKP	8	Unmodified	_LERLPGKP_					0	0	0			REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	455.279452	908.544351	0.010187	4.6378E-06	-2.5513	-0.0011616	-2.5412	-0.0011569	455.2782057284155	18.18	0.29713	17.975	17.815	18.113	-0.20451	-0.023495	0.00063161	NaN	20.482	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38479	+		39157	33464	26907	26960							0.08642081514040001
LERLPLQT	8	Unmodified	_LERLPLQT_					0	0	0		ENST00000482015.5_1_7:48129906-48134415:+|nuORF	ENST00000482015.5_1_7:48129906-48134415:+|nuORF	ENST00000482015.5_1_7:48129906-48134415:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2877197265625	2	485.290017	968.565481	0.2133	0.00010351	-3.8434	-0.0018651	-3.6301	-0.0017616	485.28829372610755	18.064	2.2094	17.932	17.464	19.674	-0.13147					99	44	5	0	0	0	1.0574	1	266	266		25.574	0.12388	1	6599700			39158	15244	26908	26961	44667	44667					0.07994046822898326
LERLRLTE	8	Unmodified	_LERLRLTE_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;ENST00000587856.1_1_17:43311355-43318139:+|nuORF	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2691650390625	2	515.306198	1028.59784	-0.34141	-0.00017593	0.13741	7.0807E-05	-0.204	-0.00010512	515.3062263623871	50.826	0.45824	50.826	50.609	51.067	0					29	12	3	0	0	0	0.027866	1	5375	5375		35.618	0	1	924020			39159	9383	26909	26962	44668	44668					0.08468834225891442
LERLTTPK	8	Unmodified	_LERLTTPK_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.9744873046875	2	479.290017	956.565481	-0.94502	-0.00045294	0.52024	0.00024935	-0.42478	-0.00020359	479.29016903622096	44.354	0.50111	44.209	43.958	44.459	-0.14471					18	14	2	0	0	0	0.027866	1	4175	4175		21.96	0	1	175010	+		39160	26419	26910	26963	44669	44669					0.08546046822880271
LERMCERA	8	Unmodified	_LERMCERA_					0	0	0		ENSG00000030304|ENST00000374448|MUSK;nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7669372558594	2	504.241686	1006.46882	-0.15039	-7.5831E-05	-2.6443	-0.0013334	-2.7947	-0.0014092	504.23743705297835	65.735	0.58148	65.494	65.207	65.789	-0.24145					24	13	3	0	0	0	0.027866	1	7549	7549		60.972	7.6205	1	282190			39161	1010	26911	26964	44670	44670					-0.034155870001995936
LERMFRGS	8	Unmodified	_LERMFRGS_					0	0	0			REV__ENSG00000135541|ENST00000265602|AHI1	REV__ENSG00000135541|ENST00000265602|AHI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.2599182128906	2	498.258194	994.501834	-0.44506	-0.00022175	-2.664	-0.0013273	-3.109	-0.0015491	498.25698694595764	75.744	0.95436	75.499	75.229	76.183	-0.24455					67	25	4	0	0	0	0.77775	1	9259	9259		60.972	2.19	1	2644100	+		39162	23557	26912	26965	44671	44671					0.0043636311418140394
LERMHTFHVL	10	Unmodified	_LERMHTFHVL_					0	0	0			REV__ENST00000562829.1_1_16:24741141-24788302:+|nuORF	REV__ENST00000562829.1_1_16:24741141-24788302:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8410034179688	2	641.839882	1281.66521	-1.7534	-0.0011254	2.8462	0.0018268	1.0928	0.00070143	641.8418572607031	110.18	0.37907	110.06	109.87	110.25	-0.12524					38	15	4	0	0	0	1.1217	1	13553	13553		21.96	0.27414	1	180670	+		39163	35204	26913	26966	44672	44672					0.035645411652012626
LERNHISV	8	Unmodified	_LERNHISV_					0	0	0		ENST00000474037.5_1_19:53884796-53884955:+|nuORF	ENST00000474037.5_1_19:53884796-53884955:+|nuORF	ENST00000474037.5_1_19:53884796-53884955:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.2586364746094	2	484.269616	966.524678	-0.71432	-0.00034592	0.55694	0.00026971	-0.15738	-7.6215E-05	484.2692493208083	27.506	0.38593	27.338	27.142	27.528	-0.16816					16	8	3	0	0	0	0.027866	1	1515	1515		53.351	0	1	164140			39164	15021	26914	26967	44673	44673					0.04007705503295256
LERPPPQLL	9	Unmodified	_LERPPPQLL_					0	0	0		ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.81689453125	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.75397	1	11021	11021		42.396	5.237	1	3781500			39165	13096	26915	26968	44674	44674					0.09498308748334239
LERPPPQLL	9	Unmodified	_LERPPPQLL_					0	0	0		ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.81689453125	2	531.818941	1061.62333	0.17298	9.1995E-05	-4.1238	-0.0021931	-3.9509	-0.0021011	531.8166531068138	85.355	2.6332	85.16	83.7	86.333	-0.19508					190	61	4	0	0	0	0.75397	2	10372	10372;10397		42.396	3.6345	1	1282000			39166	13096	26915	26968	44675;44676	44675					0.09498308748334239
LERPPPQLL	9	Unmodified	_LERPPPQLL_					0	0	0		ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.816650390625	2	531.818941	1061.62333	0.26844	0.00014276	-4.3102	-0.0022922	-4.0418	-0.0021495	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.70156	2	10367	10367;10416		45.972	1.972	1	1303400			39167	13096	26915	26968	44677;44678	44677					0.09498308748334239
LERPVASGT	9	Unmodified	_LERPVASGT_					0	0	0			REV__nc|ENSG00000172009|P52888-2|THOP1	REV__nc|ENSG00000172009|P52888-2|THOP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.23663330078125	2	465.256174	928.497795	-0.44133	-0.00020533	-0.80525	-0.00037465	-1.2466	-0.00057998	465.25553420058554	28.946	0.25777	28.949	28.713	28.971	0.0031357					7	5	2	0	0	0	0.024436	1	1701	1701		30.504	7.4612	1	49108	+		39168	26628	26916	26969	44679	44679					0.03068596892092046
LERPWLQA	8	Unmodified	_LERPWLQA_					0	0	0		ENST00000447814.1_2_2:95830931-95831156:-|nuORF	ENST00000447814.1_2_2:95830931-95831156:-|nuORF	ENST00000447814.1_2_2:95830931-95831156:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7562255859375	2	506.782359	1011.55016	-0.83871	-0.00042504	-0.5336	-0.00027042	-1.3723	-0.00069546	506.78033406554124	35.187	0.24985	35.187	35.056	35.306	0					13	6	3	0	0	0	0.027866	1	2696	2696		33.516	5.6333	1	109710			39169	14474	26917	26970	44680	44680					0.04485180025699265
LERQQDLMS	9	Unmodified	_LERQQDLMS_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.2548217773438	2	560.27678	1118.53901	-1.1819	-0.00066221	0.65011	0.00036424	-0.53183	-0.00029797	560.7784578403779	64.71	0.60287	64.447	64.155	64.758	-0.2626					30	15	3	0	0	0	0.024457	1	7550	7550		29.15	0	1	217710	+		39170	24122	26918	26971	44681	44681					-0.015520101307402001
LERQQDLMS	9	Unmodified	_LERQQDLMS_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.27678	1118.53901	0.090903	5.0931E-05	-1.6572	-0.00092851	-1.5663	-0.00087758	560.7776664287941	64.421	0.45503	64.466	64.225	64.68	0.045502	0.014994	-0.0010257	NaN	29.15	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223180	+		39171	24122	26918	26971							-0.015520101307402001
LERQRTCVL	9	Unmodified	_LERQRTCVL_					0	0	0			REV__ENST00000507721.5_1_4:83346643-83346850:-|nuORF	REV__ENST00000507721.5_1_4:83346643-83346850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.3240966796875	2	559.310958	1116.60736	-0.25584	-0.00014309	-3.4281	-0.0019174	-3.6839	-0.0020605	559.3105857940537	98.832	0.43361	98.663	98.461	98.895	-0.16862					12	9	2	0	0	0	0.024477	1	12234	12234		27.882	4.3595	1	26088	+		39172	34053	26919	26972	44682	44682					0.05372279239782074
LERRAKLM	8	Unmodified	_LERRAKLM_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.81329345703125	2	508.805311	1015.59607	-1.266	-0.00064413	0.51831	0.00026372	-0.74766	-0.00038041	508.80541255840296	93.414	0.52406	93.274	93.004	93.528	-0.13995					26	11	4	0	0	0	0.027866	1	11459	11459		14.664	1.7049	1	178220	+		39173	26128	26920	26973	44683	44683					0.08889501936300803
LERREQLK	8	Unmodified	_LERREQLK_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3173828125	2	536.317097	1070.61964	-1.5308	-0.00082098	2.5047	0.0013433	0.97395	0.00052235	536.3178948393053	21.06	1.0791	20.847	20.525	21.604	-0.2128					30	21	3	0	0	0	1.0009	1	588	588		37.159	2.9866	1	634010			39174	2969	26921	26974	44684	44684					0.08715638974467765
LERRHLRG	8	Unmodified	_LERRHLRG_					0	0	0			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.8232421875	2	518.809774	1035.60499	0.60048	0.00031154	2.2039	0.0011434	2.8044	0.0014549	518.810307448671	87.658	1.4226	87.522	86.413	87.836	-0.13613					77	33	4	0	0	0	0.027866	1	10523	10523		20.482	12.251	1	354220	+		39175	27834	26922	26975	44685	44685					0.08861611616998744
LERRHLRG	8	Unmodified	_LERRHLRG_					0	0	0			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.809774	1035.60499	-0.37845	-0.00019634	2.6315	0.0013653	2.2531	0.0011689	518.8108365433989	87.763	0.98171	87.584	86.903	87.885	-0.17874	0.031058	0.00029792	NaN	13.775	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390530	+		39176	27834	26922	26975							0.08861611616998744
LERRHLRG	8	Unmodified	_LERRHLRG_					0	0	0			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.809774	1035.60499	0.14313	7.4258E-05	2.2095	0.0011463	2.3526	0.0012206	518.8105218921881	87.691	0.73476	87.554	87.206	87.94	-0.13734	0.00063544	-0.00013998	NaN	13.775	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342390	+		39177	27834	26922	26975							0.08861611616998744
LERRHQPL	8	Unmodified	_LERRHQPL_					0	0	0			REV__ENST00000479127.5_1_21:46378257-46396715:+|nuORF	REV__ENST00000479127.5_1_21:46378257-46396715:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7591552734375	2	524.804157	1047.59376	-0.050651	-2.6582E-05	1.2368	0.0006491	1.1862	0.00062252	524.8051302970439	57.209	0.35875	56.984	56.814	57.173	-0.2248					17	9	3	0	0	0	0.027866	1	6237	6237		31.955	11.958	1	186590	+		39178	33389	26923	26976	44686	44686					0.07186789522847903
LERRKLPG	8	Unmodified	_LERRKLPG_					0	0	0		ENST00000502514.5_1_5:177377366-177384631:+|nuORF	ENST00000502514.5_1_5:177377366-177384631:+|nuORF	ENST00000502514.5_1_5:177377366-177384631:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2591552734375	2	484.803626	967.592698	0.26288	0.00012744	4.4672	0.0021657	4.7301	0.0022932	484.80593626071845	20.951	0.43386	20.774	20.533	20.967	-0.17721					13	8	2	0	0	0	0.027866	1	622	622		17.365	0	1	21964			39179	15672	26924	26977	44687	44687					0.10760575153949503
LERRLKRIE	9	Unmodified	_LERRLKRIE_					0	0	0			REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9229431152344	3	404.922689	1211.74624	-0.22601	-9.1516E-05	-0.11784	-4.7715E-05	-0.34385	-0.00013923	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	0.96732	1	1361	1361		27.047	3.6694	1	42722000	+		39180	36891	26925	26978	44688	44688					0.14883565199625082
LERRLKRIE	9	Unmodified	_LERRLKRIE_					0	0	0			REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9231262207031	3	404.922689	1211.74624	-0.99259	-0.00040192	0.60463	0.00024483	-0.38797	-0.0001571	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	0.73558	2	1319	1319;1341		43.651	10.9	1	42819000	+		39181	36891	26925	26978	44689;44690	44689					0.14883565199625082
LERRQADTF	9	Unmodified	_LERRQADTF_					0	0	0			REV__nc|ENSG00000115705|P07202-5|TPO	REV__nc|ENSG00000115705|P07202-5|TPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	568.296362	1134.57817	-1.0309	-0.00058585	1.7136	0.00097381	0.68268	0.00038796	568.2968316434938	90.627	0.38024	90.472	90.264	90.644	-0.1552					15	8	3	0	0	0	0.024457	1	11113	11113		29.15	0	1	255530	+		39182	22227	26926	26979	44691	44691					0.016264582151279683
LERRRAVRLP	10	Unmodified	_LERRRAVRLP_					0	0	0		ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.59246826171875	3	422.60195	1264.78402	0.31104	0.00013145	4.3423	0.0018351	4.6533	0.0019665	422.6043577526954	50.045	0.18911	50.126	50.054	50.243	0.08099					6	5	2	0	0	0	0.03519	1	5130	5130		11.097	6.2106	1	100830			39183	8784	26927	26980	44692	44692					0.16222076185090373
LERRRKRRHQK	11	Unmodified	_LERRRKRRHQK_					0	0	0		ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7691040039062	3	521.657341	1561.95019	-0.10052	-5.2436E-05	-0.4277	-0.00022311	-0.52822	-0.00027555	521.6571160409203	55.504	1.7884	55.504	55.249	57.038	0					80	50	2	0	0	0	0.024869	1	6158	6158		11.932	3.1331	1	849570			39184	11242	26928	26981	44693	44693					0.19169522413631057
LERRRKRRHQK	11	Unmodified	_LERRRKRRHQK_					0	0	0		ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.768310546875	3	521.657341	1561.95019	-0.39508	-0.0002061	-0.19157	-9.9934E-05	-0.58665	-0.00030603	521.6572254028941	55.711	1.8699	55.555	55.26	57.13	-0.15601					82	51	2	0	0	0	0.024851	1	6153	6153		9.6461	0.84683	1	541250			39185	11242	26928	26981	44694	44694					0.19169522413631057
LERRSKLD	8	Unmodified	_LERRSKLD_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.81329345703125	2	508.795998	1015.57744	-1.1252	-0.00057247	-1.8366	-0.00093443	-2.9617	-0.0015069	508.7947468974915	93.56	1.4245	93.42	92.786	94.211	-0.13995					71	32	4	0	0	0	0.027866	1	11459	11459		21.96	3.6355	1	272540			39186	7177	26929	26982	44695	44695					0.07027663566088904
LERRVPGS	8	Unmodified	_LERRVPGS_					0	0	0			REV__ENSG00000006016|ENST00000392386|CRLF1	REV__ENSG00000006016|ENST00000392386|CRLF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2646179199219	2	457.264333	912.514114	-0.063831	-2.9188E-05	0.38004	0.00017378	0.31621	0.00014459	457.2643951564857	94.372	1.3211	94.224	93.738	95.059	-0.14771					69	30	5	0	0	0	0.94517	1	11618	11618		45.952	0	1	1332600	+		39187	19818	26930	26983	44696	44696					0.05435722848869773
LERSGQQVL	9	Unmodified	_LERSGQQVL_					0	0	0			REV__nc|ENSG00000140577|Q6UUV7-3|CRTC3	REV__nc|ENSG00000140577|Q6UUV7-3|CRTC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2771606445312	2	515.288005	1028.56146	-0.55486	-0.00028591	1.8344	0.00094524	1.2795	0.00065933	515.2887207684543	68.819	0.25787	68.819	68.641	68.898	0					10	6	2	0	0	0	0.02435	1	8244	8244		51.335	3.6781	1	199120	+		39188	24033	26931	26984	44697	44697					0.04831957329201941
LERSKLWD	8	Unmodified	_LERSKLWD_					0	0	0		ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.303466796875	2	523.785099	1045.55564	0.4613	0.00024162	-0.7829	-0.00041007	-0.3216	-0.00016845	523.7847976326563	88.586	0.43046	88.602	88.45	88.88	0.015907					12	9	2	0	0	0	0.027866	1	11129	11129		30.504	13.139	1	86177			39189	13874	26932	26985	44698	44698					0.03468858817518594
LERSRDIRA	9	Unmodified	_LERSRDIRA_					0	0	0			REV__nc|ENSG00000116584|Q92974-2|ARHGEF2	REV__nc|ENSG00000116584|Q92974-2|ARHGEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.7927856445312	2	558.317628	1114.6207	0.020688	1.155E-05	1.8003	0.0010051	1.821	0.0010167	558.318135116579	57.787	0.422	57.597	57.407	57.829	-0.19017					24	10	3	0	0	0	0.024261	1	6313	6313		54.776	0	1	578750	+		39190	22283	26933	26986	44699	44699					0.0679785334339158
LERSRTLEL	9	Unmodified	_LERSRTLEL_					0	0	0			REV__ENSG00000166884|ENST00000300127|OR4D6	REV__ENSG00000166884|ENST00000300127|OR4D6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.8004760742188	2	558.822212	1115.62987	-0.12182	-6.8075E-05	2.2496	0.0012571	2.1278	0.001189	559.3243653410066	87.159	0.45535	86.98	86.698	87.154	-0.17875					14	10	2	0	0	0	0.024477	1	10553	10553		35.618	8.9254	1	70798	+		39191	26071	26934	26987	44700	44700					0.07668201909041272
LERSRVTDM	9	Unmodified	_LERSRVTDM_					0	0	0		nc|ENSG00000137500|Q9GZT6-2|CCDC90B;ENSG00000137500|ENST00000529689|CCDC90B;ENST00000526265.5_1_11:82984683-82985032:-|nuORF;ENST00000533761.5_2_11:82978071-82985032:-|nuORF;ENST00000514414.1_1_4:74951714-74951975:-|nuORF;ENST00000260054.8_1_11:82972955-82984922:-|nuORF;nc|ENSG00000137500|Q9GZT6-3|CCDC90B	nc|ENSG00000137500|Q9GZT6-2|CCDC90B	nc|ENSG00000137500|Q9GZT6-2|CCDC90B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7862548828125	2	553.784773	1105.55499	-1.3128	-0.00072703	4.243	0.0023497	2.9302	0.0016227	553.7870263919933	55.908	1.2554	55.693	55.336	56.591	-0.21551					82	32	4	0	0	0	0.75397	1	6061	6061		42.396	1.618	1	12201000			39192	5131	26935	26988	44701	44701					0.006436961061581314
LERTYPAL	8	Unmodified	_LERTYPAL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.9546813964844	2	481.768917	961.523281	0.91879	0.00044264	3.7175	0.001791	4.6363	0.0022336	481.7707159353346	20.188	1.0729	19.992	19.509	20.582	-0.19577					35	21	2	0	0	0	0.027866	1	463	463		47.916	24.873	1	46568			39193	1392	26936	26989	44702	44702					0.04098071414523474
LERVFAKP	8	Unmodified	_LERVFAKP_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.28729248046875	2	480.287277	958.560001	-0.20623	-9.9049E-05	0.07579	3.6401E-05	-0.13044	-6.2647E-05	480.28724246529	66.025	1.0632	65.774	65.353	66.416	-0.25112					79	26	4	0	0	0	0.87148	1	7579	7579		53.351	2.016	1	6789200			39194	7345	26937	26990	44703	44703					0.0790636803109237
LERVVKLLD	9	Unmodified	_LERVVKLLD_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8198852539062	2	542.839874	1083.66519	-0.94457	-0.00051275	-1.1678	-0.00063392	-2.1124	-0.0011467	542.8395319082787	47.76	0.88001	47.76	47.464	48.344	0					51	26	4	0	0	0	0.024292	1	4797	4797		49.442	13.823	1	979920	+		39195	23691	26938	26991	44704	44704					0.1267086443685912
LESAHNPII	9	Unmodified	_LESAHNPII_					0	0	0		AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.2834777832031	2	497.271824	992.529095	-1.1327	-0.00056328	-1.0364	-0.00051535	-2.1691	-0.0010786	497.27138878626715	44.015	0.30168	43.796	43.525	43.826	-0.21939					11	7	2	0	0	0	0.024487	1	4037	4037		17.365	0	1	592790			39196	46	26939	26992	44705	44705					0.03253169926199462
LESAPQPKN	9	Unmodified	_LESAPQPKN_					0	0	0			REV__ENST00000370069.5_1_20:62219030-62219531:-|nuORF	REV__ENST00000370069.5_1_20:62219030-62219531:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.8299255371094	2	492.261456	982.50836	-0.13943	-6.8636E-05	0.08901	4.3816E-05	-0.050419	-2.4819E-05	492.26146415800724	25.919	0.39673	25.748	25.499	25.896	-0.17078					25	10	3	0	0	0	0.023635	1	1259	1259		47.657	0	1	1151800	+		39197	31109	26940	26993	44706	44706					0.016405795465288975
LESASFRQN	9	Unmodified	_LESASFRQN_					0	0	0		ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.262451171875	2	526.261988	1050.50942	-0.51906	-0.00027316	3.8585	0.0020306	3.3395	0.0017574	526.2628577655713	56.122	1.5904	55.966	55.093	56.684	-0.15602					152	43	5	0	0	0	0.50848	1	6185	6185		58.782	6.4828	1	3888900			39198	1628	26941	26994	44707	44707					-0.01381206084556652
LESDPIVAQ	9	Unmodified	_LESDPIVAQ_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29217529296875	2	486.25584	970.497126	-0.81149	-0.00039459	2.4703	0.0012012	1.6588	0.0008066	486.2579111793273	81.902	0.2459	81.927	81.819	82.065	0.025719					9	5	2	0	0	0	0.024427	1	10156	10156		34.173	0	1	78996			39199	6479	26942	26995	44708	44708					0.01069757452387421
LESELYLL	8	Unmodified	_LESELYLL_					0	0	0			REV__ENST00000565278.1_1_16:72763309-72763579:+|nuORF	REV__ENST00000565278.1_1_16:72763309-72763579:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.24822998046875	2	490.270958	978.527364	-0.027904	-1.3681E-05	-3.1605	-0.0015495	-3.1884	-0.0015632	490.2681180040733	53.637	0.1093	53.392	53.311	53.421	-0.2453					4	2	2	0	0	0	0.027866	1	5613	5613		28.254	0	1	97728	+		39200	32631	26943	26996	44709	44709					0.037241161175643356
LESERRVL	8	Unmodified	_LESERRVL_					0	0	0			REV__ENST00000567550.1_1_16:15528510-15675189:+|nuORF	REV__ENST00000567550.1_1_16:15528510-15675189:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.25799560546875	2	501.290548	1000.56654	0.11849	5.9399E-05	-0.49525	-0.00024827	-0.37676	-0.00018887	501.29033025785617	24.141	1.4528	23.926	23.14	24.592	-0.2151					71	33	4	0	0	0	0.027866	1	1044	1044		16.473	0	1	572810	+		39201	21054	26944	26997	44710	44710					0.06628261191815454
LESFRPVI	8	Unmodified	_LESFRPVI_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF;REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29217529296875	2	480.779285	959.544017	-0.21366	-0.00010272	2.0499	0.00098555	1.8362	0.00088282	480.78135896109717	56.043	0.15295	55.886	55.82	55.972	-0.15656					7	3	3	0	0	0	0.027866	1	6058	6058		26.796	2.5934	1	127830	+		39202	24734;32223	26945	26998	44711	44711					0.06262661794187352
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8111572265625	2	521.810782	1041.60701	-0.52963	-0.00027637	0.41705	0.00021762	-0.11258	-5.8746E-05	521.8107722147917	89.293	0.99488	89.293	89.02	90.015	0					54	23	4	0	0	0	0.55353	1	11274	11274		82.241	1.7859	1	937730	+		39203	28204	26946	26999	44712	44712					0.08787182791593295
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.81103515625	2	521.810782	1041.60701	0.050635	2.6422E-05	-0.089287	-4.6591E-05	-0.038652	-2.0169E-05	521.8104330162386	89.407	0.91453	89.423	89.092	90.006	0.015907					50	21	4	0	0	0	0.28861	1	11204	11204		110.12	24.258	1	729910	+		39204	28204	26946	26999	44713	44713					0.08787182791593295
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	521.810782	1041.60701	-0.52963	-0.00027637	0.41705	0.00021762	-0.11258	-5.8746E-05	521.8107722147917	89.293	0.99488	89.293	89.02	90.015	0	0.046818	0.00036651	NaN	110.12	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937730	+		39205	28204	26946	26999							0.08787182791593295
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.810782	1041.60701	0.29794	0.00015547	-0.27743	-0.00014477	0.020502	1.0698E-05	521.8102619137035	89.262	1.0045	89.24	88.95	89.954	-0.021645	-0.0056719	-0.00035827	NaN	110.12	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762640	+		39206	28204	26946	26999							0.08787182791593295
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	521.810782	1041.60701	0.050635	2.6422E-05	-0.089287	-4.6591E-05	-0.038652	-2.0169E-05	521.8104330162386	89.407	0.91453	89.423	89.092	90.006	0.015907	0.17652	-0.00016192	NaN	110.12	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729910	+		39207	28204	26946	26999							0.08787182791593295
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.810782	1041.60701	-0.86342	-0.00045054	0.55092	0.00028747	-0.31251	-0.00016307	521.810948004015	89.315	0.58074	89.152	88.891	89.472	-0.1626	-0.093655	0.00050621	NaN	110.12	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190610	+		39208	28204	26946	26999							0.08787182791593295
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.810782	1041.60701	-0.0050973	-2.6598E-06	-0.41211	-0.00021504	-0.41721	-0.0002177	521.8104717092544	89.28	0.62805	89.152	88.871	89.5	-0.12774	-0.093927	-0.00049882	NaN	110.12	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253170	+		39209	28204	26946	26999							0.08787182791593295
LESGALIILN	10	Unmodified	_LESGALIILN_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.810782	1041.60701	0.286	0.00014924	-0.76703	-0.00040024	-0.48103	-0.00025101	521.8102583919253	89.354	0.67319	89.216	88.946	89.619	-0.13762	-0.030087	-0.00086923	NaN	110.12	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209420	+		39210	28204	26946	26999							0.08787182791593295
LESHGIDVQ	9	Unmodified	_LESHGIDVQ_					0	0	0		nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7845153808594	2	499.251089	996.487624	-0.44768	-0.00022351	-2.0296	-0.0010133	-2.4773	-0.0012368	499.2497371801977	46.997	0.5465	47.056	46.842	47.389	0.059097					25	14	2	0	0	0	0.024344	1	4650	4650		23.523	0	1	167840			39211	5964	26947	27000	44714	44714					-0.010760108331396623
LESHGIDVQ	9	Unmodified	_LESHGIDVQ_					0	0	0		nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.251089	996.487624	-0.06665	-3.3275E-05	-1.1545	-0.00057638	-1.2211	-0.00060966	499.25059034354325	46.847	0.50276	46.75	46.506	47.008	-0.096649	-0.1797	0.0003582	NaN	17.468	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277180			39212	5964	26947	27000							-0.010760108331396623
LESHGIDVQ	9	Unmodified	_LESHGIDVQ_					0	0	0		nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.251089	996.487624	0.10573	5.2785E-05	-2.2076	-0.0011021	-2.1019	-0.0010494	499.2504418280652	47.237	0.42975	46.968	46.695	47.125	-0.26939	0.037746	-0.00069333	NaN	17.468	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274600			39213	5964	26947	27000							-0.010760108331396623
LESHGIDVQ	9	Unmodified	_LESHGIDVQ_					0	0	0		nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.251089	996.487624	-0.61101	-0.00030505	-0.80137	-0.00040009	-1.4124	-0.00070513	499.25064503716544	47.002	0.43317	46.808	46.644	47.077	-0.19387	-0.12201	0.0007108	NaN	17.468	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352430			39214	5964	26947	27000							-0.010760108331396623
LESIDIDKI	9	Unmodified	_LESIDIDKI_					0	0	0		ENSG00000170549|ENST00000302006|IRX1	ENSG00000170549|ENST00000302006|IRX1	ENSG00000170549|ENST00000302006|IRX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2964477539062	2	523.292422	1044.57029	0.32061	0.00016777	4.2527	0.0022254	4.5733	0.0023932	523.2947323964279	35.801	1.527	35.603	35.169	36.696	-0.19829					114	40	4	0	0	0	0.70186	1	2779	2779		45.952	0	1	17849000			39215	8054	26948	27001	44715	44715					0.04978886175013031
LESITELPLDL	11	Unmodified	_LESITELPLDL_					0	0	0			REV__nc|ENSG00000204084|P32019-3|INPP5B	REV__nc|ENSG00000204084|P32019-3|INPP5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.8984069824219	3	414.899105	1241.67548	0.04343	1.8019E-05	-1.9687	-0.00081683	-1.9253	-0.00079881	414.8983674042411	25.156	1.4178	25.156	24.786	26.203	0					97	33	6	0	0	0	0.75915	1	1151	1151		60.167	3.5347	1	11629000	+		39216	28565	26949	27002	44716	44716					0.06431382580763056
LESKLEHLT	9	Unmodified	_LESKLEHLT_					0	0	0		ENST00000515643.1_1_1:154680226-154680694:-|nuORF;nc|ENSG00000143603|Q9UGI6-3|KCNN3;nc|ENSG00000143603|Q9UGI6-2|KCNN3;ENSG00000143603|ENST00000271915|KCNN3	ENST00000515643.1_1_1:154680226-154680694:-|nuORF	ENST00000515643.1_1_1:154680226-154680694:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2843017578125	2	535.298039	1068.58152	-1.6276	-0.00087127	0.042322	2.2655E-05	-1.5853	-0.00084862	535.2981909146648	37.876	0.14217	37.793	37.671	37.813	-0.082516					5	3	2	0	0	0	0.024523	1	3113	3113		29.15	16.943	1	194040			39217	5670	26950	27003	44717	44717					0.04997708269138457
LESLGAALLL	10	Unmodified	_LESLGAALLL_					0	0	0		ENST00000567461.5_1_15:45879535-45879721:+|nuORF;ENST00000220531.7_1_15:45879535-45884339:+|nuORF;ENST00000567740.5_1_15:45879535-45897659:+|nuORF;ENST00000564080.1_1_15:45879550-45951252:+|nuORF	ENST00000567461.5_1_15:45879535-45879721:+|nuORF	ENST00000567461.5_1_15:45879535-45879721:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2876892089844	2	500.307875	998.601197	-0.085936	-4.2994E-05	-0.33141	-0.00016581	-0.41735	-0.0002088	500.307520833644	89.543	0.95796	89.543	88.978	89.936	0					44	22	3	0	0	0	0.03519	1	11297	11297		97.473	18.022	1	483950			39218	11177	26951	27004	44718	44718					0.10184084279910621
LESLHGCVQ	9	Unmodified	_LESLHGCVQ_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.28692626953125	2	493.242209	984.469866	-0.43046	-0.00021232	0.15864	7.8246E-05	-0.27182	-0.00013407	493.24235039064354	22.145	0.33099	21.959	21.858	22.189	-0.18539					12	6	2	0	0	0	0.024323	1	774	774		27.882	0	1	19235			39219	4613	26952	27005	44719	44719					-0.02299049359635319
LESLHKFPK	9	Unmodified	_LESLHKFPK_					0	0	0			REV__ENSG00000166188|ENST00000299237|ZNF319	REV__ENSG00000166188|ENST00000299237|ZNF319	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2952270507812	2	549.818941	1097.62333	-0.034709	-1.9084E-05	0.19341	0.00010634	0.1587	8.7255E-05	549.818406954029	95.781	0.79224	95.787	95.518	96.31	0.0057983					20	18	2	0	0	0	0.024495	1	12175	12175		19.997	0	1	44129	+		39220	25989	26953	27006	44720	44720					0.07842308748331561
LESLISYR	8	Unmodified	_LESLISYR_					0	0	0			REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	REV__nc|ENSG00000167632|Q96Q05-3|TRAPPC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.7742614746094	2	490.7742	979.533846	-1.3191	-0.0006474	-0.16956	-8.3217E-05	-1.4887	-0.00073062	490.7739507814715	28.259	0.56395	28.014	27.842	28.406	-0.24524					30	13	4	0	0	0	0.87148	1	1640	1640		53.351	3.3269	1	851850	+		39221	36897	26954	27007	44721	44721					0.04326054068951635
LESLPFRR	8	Unmodified	_LESLPFRR_					0	0	0		ENST00000490682.5_1_2:202098821-202105035:+|nuORF	ENST00000490682.5_1_2:202098821-202105035:+|nuORF	ENST00000490682.5_1_2:202098821-202105035:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.76959228515625	2	509.295633	1016.57671	-0.50944	-0.00025946	0.18473	9.4081E-05	-0.32472	-0.00016538	509.29552118689037	42.636	0.60968	42.404	42.155	42.765	-0.23186					26	15	2	0	0	0	0.027866	1	3805	3805		24.203	16.512	1	350790			39222	15436	26955	27008	44722	44722					0.06908868917048494
LESLPFRR	8	Unmodified	_LESLPFRR_					0	0	0		ENST00000490682.5_1_2:202098821-202105035:+|nuORF	ENST00000490682.5_1_2:202098821-202105035:+|nuORF	ENST00000490682.5_1_2:202098821-202105035:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.295633	1016.57671	-0.074847	-3.8119E-05	0.17651	8.9897E-05	0.10167	5.1778E-05	509.2955782285165	42.562	0.44829	42.439	42.195	42.643	-0.12299	-0.0053186	0.00018643	NaN	24.203	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213340			39223	15436	26955	27008							0.06908868917048494
LESLQILGP	9	Unmodified	_LESLQILGP_					0	0	0		ENST00000372829.7_1_X:100805992-100807819:+|nuORF	ENST00000372829.7_1_X:100805992-100807819:+|nuORF	ENST00000372829.7_1_X:100805992-100807819:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2559509277344	2	485.2844	968.554247	-0.33851	-0.00016427	1.2768	0.00061963	0.93834	0.00045536	485.2848104730613	52.74	1.1168	52.832	52.04	53.157	0.091938					48	28	2	0	0	0	0.024457	1	5622	5622		45.952	10.334	1	225920			39224	13057	26956	27009	44723	44723					0.06871224728763536
LESLRLFTL	9	Unmodified	_LESLRLFTL_					0	0	0			REV__ENST00000483782.1_1_6:26087668-26091517:+|nuORF	REV__ENST00000483782.1_1_6:26087668-26091517:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.326904296875	2	546.326599	1090.63865	0.24638	0.0001346	-0.035935	-1.9632E-05	0.21045	0.00011497	546.3265172259262	79.879	1.1618	79.632	79.32	80.482	-0.2465					42	27	2	0	0	0	0.34489	1	9554	9554		69.628	2.134	1	1954700	+		39225	33520	26957	27010	44724	44724					0.09695175545539314
LESLRLFTL	9	Unmodified	_LESLRLFTL_					0	0	0			REV__ENST00000483782.1_1_6:26087668-26091517:+|nuORF	REV__ENST00000483782.1_1_6:26087668-26091517:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.3268432617188	2	546.326599	1090.63865	0.090309	4.9338E-05	-0.032263	-1.7626E-05	0.058047	3.1712E-05	546.3265179502704	79.816	1.1267	79.597	79.327	80.454	-0.21923					49	26	2	0	0	0	0.34489	1	9574	9574		69.628	2.134	1	1890300	+		39226	33520	26957	27010	44725	44725					0.09695175545539314
LESLWNLL	8	Unmodified	_LESLWNLL_					0	0	0		ENST00000482490.5_1_3:64619519-64627610:-|nuORF	ENST00000482490.5_1_3:64619519-64627610:-|nuORF	ENST00000482490.5_1_3:64619519-64627610:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2704772949219	2	494.279118	986.543683	0.5181	0.00025609	3.5318	0.0017457	4.0499	0.0020018	494.27826796137344	77.349	0.6741	77.349	76.998	77.672	0					38	15	4	0	0	0	0.027866	1	9585	9585		38.806	0	1	781860			39227	15260	26958	27011	44726	44726					0.049872420743326984
LESLYPLAK	9	Unmodified	_LESLYPLAK_					0	0	0		ENSG00000177374|ENST00000619757|HIC1;nc|ENSG00000177374|Q14526|HIC1	ENSG00000177374|ENST00000619757|HIC1	ENSG00000177374|ENST00000619757|HIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3238525390625	2	517.30005	1032.58555	-0.061629	-3.1881E-05	1.7587	0.00090975	1.697	0.00087787	517.3006380055285	64.092	0.72369	63.84	63.48	64.204	-0.25141					51	19	4	0	0	0	0.024374	1	7471	7471		40.778	3.7497	1	1936600			39228	8732	26959	27012	44727	44727					0.07055797762859584
LESMLHGQV	9	Unmodified	_LESMLHGQV_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2969665527344	2	507.257859	1012.50117	0.29066	0.00014744	-0.75931	-0.00038517	-0.46865	-0.00023773	507.257612508447	58.442	0.91352	58.534	58.118	59.032	0.091217					39	24	2	0	0	0	0.024457	1	6513	6513		45.952	3.4775	1	205800			39229	6738	26960	27013	44728	44728					-0.004584763255365942
LESPKKYI	8	Unmodified	_LESPKKYI_					0	0	0		ENST00000525280.1_1_11:31302221-31302329:-|nuORF	ENST00000525280.1_1_11:31302221-31302329:-|nuORF	ENST00000525280.1_1_11:31302221-31302329:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.28643798828125	2	489.286943	976.559333	-0.055343	-2.7079E-05	-0.41283	-0.00020199	-0.46818	-0.00022907	489.28663288298486	63.363	1.2931	63.179	62.83	64.124	-0.18386					84	32	4	0	0	0	0.26064	1	7146	7146		128.86	0	1	7704800			39230	16088	26961	27014	44729	44729					0.07011528591374372
LESPMAPAP	9	Unmodified	_LESPMAPAP_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2589111328125	2	456.728403	911.442254	-0.39796	-0.00018176	2.6821	0.001225	2.2842	0.0010433	456.729310613674	28.273	0.36954	28.273	28.037	28.406	0					12	8	2	0	0	0	0.024262	1	1641	1641		47.916	0	1	19786			39231	4074	26962	27015	44730	44730					-0.0170095261988763
LESPPLIQSQP	11	Unmodified	_LESPPLIQSQP_					0	0	0		ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5706787109375	3	403.555561	1207.64485	0.68538	0.00027659	-2.9927	-0.0012077	-2.3073	-0.00093113	403.5541946643824	19.826	0.73279	19.593	19.325	20.057	-0.23345					30	14	3	0	0	0	0.024757	1	461	461		20.315	0	1	65502			39232	14700	26963	27016	44731	44731					0.049336489863890165
LESPWSLDP	9	Unmodified	_LESPWSLDP_					0	0	0		nc|ENSG00000165643|Q5JUK2|SOHLH1;ENSG00000165643|ENST00000425225|SOHLH1	nc|ENSG00000165643|Q5JUK2|SOHLH1	nc|ENSG00000165643|Q5JUK2|SOHLH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.3261108398438	2	522.25584	1042.49713	-0.052325	-2.7327E-05	-2.2948	-0.0011985	-2.3472	-0.0012258	522.2544109388743	81.155	0.69246	80.918	80.571	81.263	-0.23605					34	16	3	0	0	0	0.024477	1	9713	9713		35.618	0.41757	1	445000			39233	7445	26964	27017	44732	44732					-0.022422425476179342
LESRNPPVLPK	11	Unmodified	_LESRNPPVLPK_					0	0	0			REV__ENST00000377798.8_2_9:37493568-37493607:+|nuORF	REV__ENST00000377798.8_2_9:37493568-37493607:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	624.3758544921875	2	625.366787	1248.71902	0.2366	0.00014796	-0.56039	-0.00035045	-0.32379	-0.00020249	625.868096887981	100.62	0.57427	100.63	100.3	100.87	0.010117					24	13	2	0	0	0	0.024735	1	12828	12828		14.137	3.5503	1	822030	+		39234	31385	26965	27018	44733	44733					0.10461036868559859
LESRVPRAW	9	Unmodified	_LESRVPRAW_					0	0	0		ENST00000525340.5_1_11:62340970-62341174:-|nuORF	ENST00000525340.5_1_11:62340970-62341174:-|nuORF	ENST00000525340.5_1_11:62340970-62341174:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.3160400390625	2	557.311815	1112.60908	0.87399	0.00048708	-0.91962	-0.00051252	-0.045636	-2.5433E-05	557.3111119874609	22.896	0.41658	22.704	22.572	22.988	-0.19117					16	8	3	0	0	0	0.024506	1	822	822		16.473	0	1	108180			39235	16090	26966	27019	44734	44734					0.057276563200503006
LESSLAVLL	9	Unmodified	_LESSLAVLL_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7646179199219	2	472.786776	943.558998	-0.38854	-0.0001837	1.9205	0.00090798	1.5319	0.00072428	472.7875587930098	28.668	0.77195	28.499	28.213	28.985	-0.16897					48	17	3	0	0	0	0.024443	1	1651	1651		19.36	1.0356	1	385480	+		39236	23804	26967	27020	44735	44735					0.08496108871543129
LESSLTPTTIY	11	Unmodified	_LESSLTPTTIY_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	408.8852233886719	3	408.883455	1223.62853	1.9381	0.00079245	2.232	0.00091264	4.1701	0.0017051	408.88425465948023	24.185	1.7804	24.004	23.411	25.191	-0.18089					114	40	5	0	0	0	1.018	1	997	997		28.577	0	1	1163400			39237	14277	26968	27021	44736	44736					0.025665230296226582
LESSVDRGF	9	Unmodified	_LESSVDRGF_					0	0	0			REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3111267089844	2	505.251089	1008.48762	-0.73486	-0.00037129	0.36525	0.00018454	-0.36962	-0.00018675	505.25118253089306	34.753	1.1121	34.731	34.397	35.509	-0.021763					54	28	2	0	0	0	0.024477	1	2656	2656		14.865	0	1	3317400	+		39238	35905	26969	27022	44737	44737					-0.01628010833121607
LESSVRLFF	9	Unmodified	_LESSVRLFF_					0	0	0		ENST00000380516.6_1_15:59172072-59172129:-|nuORF	ENST00000380516.6_1_15:59172072-59172129:-|nuORF	ENST00000380516.6_1_15:59172072-59172129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.280517578125	2	549.303124	1096.5917	0.12279	6.745E-05	3.0055	0.0016509	3.1283	0.0017184	549.3045559425829	72.676	1.7525	72.395	71.658	73.411	-0.28124					87	44	3	0	0	0	0.024294	1	8861	8861		45.952	11.779	1	696390			39239	13312	26970	27023	44738	44738					0.047263159943895516
LESSVTGSMIN	11	Unmodified	_LESSVTGSMIN_					0	0	0		ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1	ENSG00000169855|ENST00000464233|ROBO1	ENSG00000169855|ENST00000464233|ROBO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2785034179688	2	569.276446	1136.53834	0.16078	9.1528E-05	0.21153	0.00012042	0.37231	0.00021195	569.2764219747228	79.651	1.0433	79.5	79.11	80.153	-0.15051					73	24	4	0	0	0	0.95664	1	9543	9543		46.457	0.48454	1	1595800			39240	7980	26971	27024	44739	44739					-0.02446849570401355
LESSWVLY	8	Unmodified	_LESSWVLY_					0	0	0		nc|ENSG00000099139|Q92824|PCSK5;ENSG00000099139|ENST00000674117|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7718811035156	2	498.755475	995.496398	-0.42136	-0.00021016	1.0074	0.00050244	0.58602	0.00029228	498.7567846018783	31.238	0.40742	30.997	30.627	31.034	-0.24109					12	9	2	0	0	0	0.027866	1	2050	2050		13.775	0.81615	1	122390			39241	2060	26972	27025	44740	44740					-0.0015303719666235338
LESTFPVQV	9	Unmodified	_LESTFPVQV_					0	0	0			REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2762756347656	2	510.274032	1018.53351	-0.17502	-8.931E-05	-0.38241	-0.00019514	-0.55744	-0.00028445	510.2738209542123	90.553	2.0357	90.537	90.077	92.112	-0.016716					109	48	4	0	0	0	0.20967	1	11508	11508		87.754	2.8388	1	30368000	+		39242	37234	26973	27026	44741	44741					0.024986343491036678
LESTLKNL	8	Unmodified	_LESTLKNL_					0	0	0		ENST00000531306.1_1_11:111933212-111933263:+|nuORF	ENST00000531306.1_1_11:111933212-111933263:+|nuORF	ENST00000531306.1_1_11:111933212-111933263:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2687072753906	2	459.26875	916.522947	-0.22474	-0.00010322	0.19114	8.7783E-05	-0.033603	-1.5433E-05	459.26870924287863	40.136	0.63908	39.911	39.62	40.259	-0.225					46	16	5	0	0	0	0.39824	2	3444	3444;3456		97.473	6.696	1	3753000			39243	16254	26974	27027	44742;44743	44742					0.06134651694674176
LESTLKNL	8	Unmodified	_LESTLKNL_					0	0	0		ENST00000531306.1_1_11:111933212-111933263:+|nuORF	ENST00000531306.1_1_11:111933212-111933263:+|nuORF	ENST00000531306.1_1_11:111933212-111933263:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2685546875	2	459.26875	916.522947	-0.54897	-0.00025212	0.47056	0.00021612	-0.078406	-3.6009E-05	459.26884561861465	40.139	0.64989	39.909	39.585	40.235	-0.2302					44	16	4	0	0	0	0.33369	1	3423	3423		106.42	10.225	1	3555800			39244	16254	26974	27027	44744	44744					0.06134651694674176
LESTRVPR	8	Unmodified	_LESTRVPR_					0	0	0			REV__ENST00000524388.5_1_11:74013631-74015365:-|nuORF	REV__ENST00000524388.5_1_11:74013631-74015365:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2771301269531	2	479.277441	956.540328	-0.16077	-7.7054E-05	-0.17359	-8.3198E-05	-0.33436	-0.00016025	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	0.96769	1	9740	9740		42.396	7.1954	1	2028900	+		39245	34384	26975	27028	44745	44745					0.060319920203255606
LESVDQTEAV	10	Unmodified	_LESVDQTEAV_					0	0	0		nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.8110961914062	2	545.766768	1089.51898	-1.586	-0.00086556	-3.1132	-0.0016991	-4.6991	-0.0025646	546.2656372389002	91.477	0.21431	91.477	91.383	91.597	0					5	4	2	0	0	0	0.03519	1	11594	11594		82.75	0	1	50854			39246	5826	26976	27029	44746	44746					-0.022194825897031478
LESVKPSSL	9	Unmodified	_LESVKPSSL_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29217529296875	2	480.274032	958.533512	-0.2995	-0.00014384	1.2742	0.00061197	0.97471	0.00046813	480.27464942003684	56.007	0.37368	55.851	55.678	56.052	-0.15656					12	9	2	0	0	0	0.024477	1	6058	6058		35.618	3.6634	1	249050			39247	2499	26977	27030	44747	44747					0.052586343491157095
LESVQIKPE	9	Unmodified	_LESVQIKPE_					0	0	0			REV__ENSG00000090863|ENST00000422840|GLG1	REV__ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7703247070312	2	521.792589	1041.57063	-0.47144	-0.000246	-2.5234	-0.0013167	-2.9948	-0.0015627	521.7915752585069	73.203	0.87789	72.926	72.411	73.288	-0.2769					29	20	2	0	0	0	0.024418	1	8567	8567		45.972	0	1	77305	+		39248	20887	26978	27031	44748	44748					0.0515030589485832
LESVQIKPE	9	Unmodified	_LESVQIKPE_					0	0	0			REV__ENSG00000090863|ENST00000422840|GLG1	REV__ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7716064453125	2	521.792589	1041.57063	-0.32916	-0.00017175	-3.9266	-0.0020489	-4.2558	-0.0022206	521.7916869761542	72.806	0.50718	72.608	72.371	72.878	-0.1981					18	11	2	0	0	0	0.024405	1	8525	8525		27.882	0	1	63533	+		39249	20887	26978	27031	44749	44749					0.0515030589485832
LESVRGLIV	9	Unmodified	_LESVRGLIV_					0	0	0			REV__ENSG00000173714|ENST00000311378|WFIKKN2	REV__ENSG00000173714|ENST00000311378|WFIKKN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.30609130859375	2	493.305667	984.596781	1.4181	0.00069955	-1.9008	-0.00093769	-0.48274	-0.00023814	493.30472465707845	59.354	0.87406	59.154	58.853	59.727	-0.20016					69	23	4	0	0	0	0.6504	1	6738	6738		49.442	10.189	1	9720000	+		39250	26802	26979	27032	44750	44750					0.10386619857013102
LESVRGRP	8	Unmodified	_LESVRGRP_					0	0	0			REV__ENST00000557787.1_1_15:89164581-89170043:+|nuORF	REV__ENST00000557787.1_1_15:89164581-89170043:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2640075683594	2	457.264333	912.514114	0.1671	7.6407E-05	0.47441	0.00021693	0.6415	0.00029334	457.26446009858824	78.667	1.666	78.667	78.162	79.828	0					77	39	2	0	0	0	1.0009	1	9726	9726		37.159	1.5408	1	763610	+		39251	27381	26980	27033	44751	44751					0.05435722848869773
LESWSPNI	8	Unmodified	_LESWSPNI_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7741394042969	2	473.23745	944.460347	2.0377	0.00096433	-1.3017	-0.00061599	0.73608	0.00034834	473.23668581141953	37.091	0.37837	37.091	36.927	37.305	0					14	9	2	0	0	0	0.027866	1	2978	2978		37.159	14.117	1	222390	+		39252	26810;37445	26981	27034	44752	44752					-0.014104943735219422
LESWSPNI	8	Unmodified	_LESWSPNI_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7753601074219	2	473.23745	944.460347	0.16342	7.7336E-05	1.0312	0.00048798	1.1946	0.00056532	473.2379784883043	37.137	0.38806	36.928	36.726	37.114	-0.2092					26	9	4	0	0	0	0.027866	1	2922	2922		40.573	10.069	1	296330	+		39253	26810;37445	26981	27034	44753	44753					-0.014104943735219422
LETADDRPAP	10	Unmodified	_LETADDRPAP_					0	0	0			REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	REV__ENST00000429271.1_1_21:28515665-28516046:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.243896484375	2	542.767103	1083.51965	-0.16742	-9.0871E-05	-1.9467	-0.0010566	-2.1141	-0.0011474	542.7640708352783	67.812	0.41299	67.578	67.303	67.716	-0.23375					23	9	4	0	0	0	0.03519	1	7792	7792		34.173	0	1	166940	+		39254	32331	26982	27035	44754	44754					-0.018766431499898317
LETAQKIAK	9	Unmodified	_LETAQKIAK_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2902526855469	2	501.303124	1000.5917	0.63862	0.00032014	2.3447	0.0011754	2.9833	0.0014955	501.30345097104293	85.832	0.12913	85.682	85.618	85.747	-0.14967					4	2	2	0	0	0	0.024397	1	10419	10419		39.253	2.8061	1	29687			39255	2577	26983	27036	44755	44755					0.09142315994370165
LETARALMCV	10	Unmodified	_LETARALMCV_					0	0	0		CLDN17|p.A76S|1|0.29|ENSG00000156282|chr21:30166392-30166392|C/A|missense_variant;ENSG00000156282|ENST00000286808|CLDN17	CLDN17|p.A76S|1|0.29|ENSG00000156282|chr21:30166392-30166392|C/A|missense_variant	CLDN17|p.A76S|1|0.29|ENSG00000156282|chr21:30166392-30166392|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8302001953125	2	553.788469	1105.56239	-0.83294	-0.00046127	4.3593	0.0024141	3.5264	0.0019529	553.7898477551698	89.683	0.34531	89.52	89.3	89.645	-0.1626					11	7	2	0	0	0	0.03519	1	10958	10958		47.657	5.2612	1	23655			39256	452	26984	27037	44756	44756					0.013827123822238718
LETATIAAV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LETATIAAV_					1	0	0			REV__ENSG00000174915|ENST00000308020|PTDSS2	REV__ENSG00000174915|ENST00000308020|PTDSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7604675292969	2	465.760758	929.506963	0.15209	7.0838E-05	-0.17226	-8.0234E-05	-0.020173	-9.3958E-06	465.7606084022292	86.637	1.8854	86.45	85.991	87.877	-0.18695					107	44	4	0	0	0	0.36105	1	10571	10571		68.485	8.1907	1	4526900	+		39257	26904	26985	27038	44757	44757					0.039389454577644756
LETATIAAV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LETATIAAV_					1	0	0			REV__ENSG00000174915|ENST00000308020|PTDSS2	REV__ENSG00000174915|ENST00000308020|PTDSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7608642578125	2	465.760758	929.506963	0.65909	0.00030698	-0.7545	-0.00035142	-0.095408	-4.4437E-05	465.7603284371423	86.585	2.299	86.443	85.884	88.183	-0.14217					155	54	4	0	0	0	0.26797	1	10553	10553		79.939	8.5613	1	4715700	+		39258	26904	26985	27038	44758	44758					0.039389454577644756
LETAVGKLLN	10	Unmodified	_LETAVGKLLN_					0	0	0			REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.766845703125	2	529.316232	1056.61791	-0.58278	-0.00030848	3.4232	0.001812	2.8404	0.0015035	529.3184670315908	67.471	0.7437	67.471	67.126	67.87	0					38	18	3	0	0	0	0.03519	1	8101	8101		34.173	3.6689	1	3202900	+		39259	30786	26986	27039	44759	44759					0.09186585165866745
LETAVGKLLN	10	Unmodified	_LETAVGKLLN_					0	0	0			REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.316232	1056.61791	-0.31503	-0.00016675	2.2109	0.0011703	1.8959	0.0010035	529.3174002606536	67.841	0.36547	67.552	67.227	67.593	-0.28834	0.05203	0.00072682	NaN	26.693	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3088100	+		39260	30786	26986	27039							0.09186585165866745
LETAVGKLLN	10	Unmodified	_LETAVGKLLN_					0	0	0			REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.316232	1056.61791	0.085727	4.5377E-05	1.0926	0.00057831	1.1783	0.00062369	529.3167926676621	67.51	0.32332	67.534	67.23	67.554	0.023911	0.03345	-0.00045711	NaN	26.693	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1725200	+		39261	30786	26986	27039							0.09186585165866745
LETAVGKLLN	10	Unmodified	_LETAVGKLLN_					0	0	0			REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	REV__ENST00000356166.10_3_16:30669806-30670142:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.316232	1056.61791	-0.090364	-4.7831E-05	0.94229	0.00049877	0.85192	0.00045094	529.3168434431778	67.682	0.58207	67.444	67.245	67.827	-0.23814	-0.056401	-0.0006162	NaN	26.693	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380230	+		39262	30786	26986	27039							0.09186585165866745
LETAWSLD	8	Unmodified	_LETAWSLD_					0	0	0		ENST00000471595.5_1_3:135974803-135980812:+|nuORF	ENST00000471595.5_1_3:135974803-135980812:+|nuORF	ENST00000471595.5_1_3:135974803-135980812:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.7814636230469	2	467.729458	933.444362	0.0015697	7.3419E-07	3.5213	0.001647	3.5228	0.0016477	467.73100607721744	63.549	1.5885	63.291	62.835	64.423	-0.25824					91	40	3	0	0	0	0.027866	1	7122	7122		30.504	0	1	654990			39263	14960	26987	27040	44760	44760					-0.025022006104222783
LETDKFVF	8	Unmodified	_LETDKFVF_					0	0	0		ENST00000487466.5_1_3:42662885-42662924:+|nuORF	ENST00000487466.5_1_3:42662885-42662924:+|nuORF	ENST00000487466.5_1_3:42662885-42662924:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8213806152344	2	499.7633	997.512048	-0.94358	-0.00047156	1.0535	0.00052649	0.10989	5.4921E-05	499.76293436493336	39.459	0.3869	39.36	39.127	39.514	-0.098755					28	10	4	0	0	0	0.027866	1	3376	3376		24.203	0	1	219620			39264	15367	26988	27041	44761	44761					0.013192493203973754
LETDYLLLF	9	Unmodified	_LETDYLLLF_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7657470703125	2	563.805165	1125.59578	0.18315	0.00010326	-0.93263	-0.00052582	-0.74949	-0.00042256	563.8042932134167	76.799	0.21458	76.53	76.424	76.638	-0.26806					6	4	2	0	0	0	0.024466	1	9119	9119		42.474	11.971	1	73376	+		39265	29268	26989	27042	44762	44762					0.038003606974370996
LETFRLEK	8	Unmodified	_LETFRLEK_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3208618164062	2	518.295299	1034.57605	-0.42367	-0.00021959	0.95789	0.00049647	0.53422	0.00027688	518.2954791462993	67.344	0.97707	67.344	67.01	67.987	0					48	24	4	0	0	0	0.027866	1	8124	8124		27.882	3.6795	1	1771800	+		39266	19920	26990	27043	44763	44763					0.060140294773418645
LETFRLEK	8	Unmodified	_LETFRLEK_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.295299	1034.57605	-0.16386	-8.493E-05	0.31416	0.00016283	0.1503	7.7898E-05	518.2953332400576	67.658	0.75599	67.37	66.992	67.748	-0.28834	-0.0086824	0.00052508	NaN	27.882	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1333900	+		39267	19920	26990	27043							0.060140294773418645
LETFRLEK	8	Unmodified	_LETFRLEK_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.295299	1034.57605	-0.29246	-0.00015158	0.38772	0.00020096	0.095265	4.9376E-05	518.2953703896433	67.422	0.67747	67.446	67.071	67.748	0.023911	0.067615	0.00060133	NaN	27.882	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1495300	+		39268	19920	26990	27043							0.060140294773418645
LETFRLEK	8	Unmodified	_LETFRLEK_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.295299	1034.57605	0.52056	0.00026981	-0.53047	-0.00027494	-0.0099058	-5.1341E-06	518.2949426975323	67.633	1.1557	67.378	66.993	68.148	-0.25516	-0.00093774	-0.00035046	NaN	27.882	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4569200	+		39269	19920	26990	27043							0.060140294773418645
LETFRLEK	8	Unmodified	_LETFRLEK_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.295299	1034.57605	-0.11722	-6.0756E-05	-0.047052	-2.4387E-05	-0.16427	-8.5143E-05	518.2952107301887	67.594	1.1894	67.355	66.958	68.148	-0.23814	-0.023209	0.00015065	NaN	27.882	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4336500	+		39270	19920	26990	27043							0.060140294773418645
LETGENREVV	10	Unmodified	_LETGENREVV_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.27685546875	2	573.293485	1144.57242	-1.2171	-0.00069776	2.3699	0.0013587	1.1528	0.00066089	573.2950250058359	25.943	0.16658	25.779	25.631	25.798	-0.16331					5	3	2	0	0	0	0.03519	1	1240	1240		13.454	0	1	45313			39271	3974	26991	27044	44764	44764					0.005913149127991346
LETIGHTLQ	9	Unmodified	_LETIGHTLQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2584228515625	2	506.277106	1010.53966	-0.62338	-0.0003156	0.57853	0.0002929	-0.044849	-2.2706E-05	506.2773415287553	56.329	0.89626	56.11	55.847	56.743	-0.21913					53	22	3	0	0	0	0.024381	1	6095	6095		15.642	0	1	1469300	+		39272	27387	26992	27045	44765	44765					0.03481152580638991
LETIGHTLQ	9	Unmodified	_LETIGHTLQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.277106	1010.53966	-0.30769	-0.00015578	1.7849	0.00090363	1.4772	0.00074785	506.2776172628188	56.05	0.66935	56.05	55.645	56.314	0	-0.0079012	0.00083764	NaN	10.265	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074600	+		39273	27387	26992	27045							0.03481152580638991
LETIGHTLQ	9	Unmodified	_LETIGHTLQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.277106	1010.53966	-0.45476	-0.00023023	1.7168	0.00086917	1.262	0.00063894	506.27767631309837	56.237	0.94844	56.081	55.666	56.614	-0.15601	0.022429	0.00076872	NaN	10.265	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	999850	+		39274	27387	26992	27045							0.03481152580638991
LETIGHTLQ	9	Unmodified	_LETIGHTLQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.277106	1010.53966	-0.73173	-0.00037046	1.7528	0.0008874	1.0211	0.00051694	506.2776759508597	55.914	0.83669	56.012	55.744	56.581	0.097893	-0.046414	0.00080518	NaN	10.265	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988140	+		39275	27387	26992	27045							0.03481152580638991
LETIIPINV	9	Unmodified	_LETIIPINV_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	506.307875	1010.6012	-0.4705	-0.00023822	1.4365	0.00072732	0.96602	0.00048911	506.30826536093366	47.066	0.44399	47.125	46.803	47.247	0.059097					18	11	2	0	0	0	0.024405	1	4596	4596		53.351	9.2347	1	162760	+		39276	25052	26993	27046	44766	44766					0.09632084279917308
LETKAYSSLQ	10	Unmodified	_LETKAYSSLQ_					0	0	0			REV__nc|ENSG00000139620|Q9H9L4-4|KANSL2	REV__nc|ENSG00000139620|Q9H9L4-4|KANSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.302490234375	2	570.300778	1138.587	0.042942	2.449E-05	3.3129	0.0018894	3.3559	0.0019139	570.3026134813938	99.209	1.4706	99.219	98.356	99.827	0.010239					131	33	5	0	0	0	1.0275	1	12612	12612		42.338	1.5599	1	2890600	+		39277	23951	26994	27047	44767	44767					0.023253870609551086
LETLKQLN	8	Unmodified	_LETLKQLN_					0	0	0			REV__ENSG00000006607|ENST00000264042|FARP2	REV__ENSG00000006607|ENST00000264042|FARP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.8160705566406	2	479.782025	957.549496	0.73964	0.00035487	-0.66115	-0.00031721	0.078493	3.7659E-05	479.7816015286512	49.565	0.59295	49.565	49.212	49.805	0					45	15	4	0	0	0	0.027866	1	5080	5080		85.359	0	1	1978100	+		39278	19835	26995	27048	44768	44768					0.0690234058599799
LETLLRFLN	9	Unmodified	_LETLLRFLN_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.27001953125	2	559.832049	1117.64954	0.2889	0.00016173	-0.8806	-0.00049299	-0.59171	-0.00033126	559.8312645153668	62.769	0.41046	62.823	62.679	63.09	0.054104					12	9	2	0	0	0	0.024	1	7215	7215		45.952	0	1	239060			39279	1742	26996	27049	44769	44769					0.0954257791981945
LETLPLFF	8	Unmodified	_LETLPLFF_					0	0	0		ENST00000588623.5_2_16:5134914-5135157:+|nuORF	ENST00000588623.5_2_16:5134914-5135157:+|nuORF	ENST00000588623.5_2_16:5134914-5135157:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.248046875	2	490.278586	978.54262	0.11095	5.4398E-05	-3.9138	-0.0019189	-3.8029	-0.0018645	490.2762155188694	68.344	0.72162	68.363	68.004	68.726	0.018913					27	18	3	0	0	0	0.027866	1	8132	8132		13.775	0	1	214350			39280	17290	26997	27050	44770	44770					0.05249027705440312
LETLQVLFA	9	Unmodified	_LETLQVLFA_					0	0	0			REV__ENSG00000170185|ENST00000307017|USP38	REV__ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2715454101562	2	517.30005	1032.58555	0.60075	0.00031077	-1.1097	-0.00057405	-0.50896	-0.00026329	517.2992756823282	85.521	0.879	85.521	85.206	86.085	0					33	20	2	0	0	0	0.024487	1	10709	10709		17.365	0	1	246860	+		39281	26441	26998	27051	44771	44771					0.07055797762859584
LETLSTGLAL	10	Unmodified	_LETLSTGLAL_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.29132080078125	2	509.294965	1016.57538	0.035096	1.7874E-05	1.4108	0.00071851	1.4459	0.00073638	509.2956730615933	58.76	0.56403	58.579	58.347	58.911	-0.18134					22	13	2	0	0	0	0.03519	1	6439	6439		40.778	10.937	1	307140			39282	6841	26999	27052	44772	44772					0.06775190037603807
LETLVLLN	8	Unmodified	_LETLVLLN_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S;ENST00000601544.5_1_19:17830311-17836711:+|nuORF;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	ENSG00000130479|ENST00000324096|MAP1S;MAP1S|p.A774Rfs*239|1|0.24|ENSG00000130479|chr19:17727694-17727695|-/CAGGAACG|frameshift_variant	ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.264404296875	2	457.781493	913.548434	0.19184	8.7822E-05	-0.25686	-0.00011759	-0.065016	-2.9763E-05	457.7812769734134	79.766	0.75254	79.615	79.278	80.031	-0.15051					36	17	3	0	0	0	0.027866	1	9514	9514		25.45	0	1	296740			39283	4422;17944	27000	27053	44773	44773					0.08820126217096913
LETPFLPPGS	10	Unmodified	_LETPFLPPGS_					0	0	0		ENST00000258187.9_1_16:58546304-58546466:+|nuORF	ENST00000258187.9_1_16:58546304-58546466:+|nuORF	ENST00000258187.9_1_16:58546304-58546466:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7990112304688	2	529.281857	1056.54916	0.19665	0.00010408	-0.17684	-9.36E-05	0.019804	1.0482E-05	529.2816093481064	83.748	1.2344	83.579	82.948	84.182	-0.16915					52	28	4	0	0	0	0.03519	1	10073	10073		32.812	3.6629	1	730190			39284	11416	27001	27054	44774	44774					0.023149208661379816
LETPRRVPL	9	Unmodified	_LETPRRVPL_					0	0	0		nc|ENSG00000139182|Q9BQT9-3|CLSTN3;ENST00000331148.5_1_12:7308690-7310592:+|nuORF	nc|ENSG00000139182|Q9BQT9-3|CLSTN3	nc|ENSG00000139182|Q9BQT9-3|CLSTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8314819335938	2	540.82984	1079.64513	-0.45582	-0.00024652	3.2955	0.0017823	2.8397	0.0015358	540.8316944739571	75.373	1.966	75.383	75.051	77.017	0.010376					182	50	6	0	0	0	0.80003	1	9141	9141		39.253	5.0803	1	103560000			39285	12338	27002	27055	44775	44775					0.10849113496897189
LETQRLSLF	9	Unmodified	_LETQRLSLF_					0	0	0			REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.8305053710938	2	553.813856	1105.61316	-0.19076	-0.00010564	1.8312	0.0010141	1.6404	0.00090848	554.3161215044721	101.85	0.75222	101.85	101.28	102.04	0					29	16	3	0	0	0	0.024457	1	12980	12980		37.159	8.9048	1	101690	+		39286	19138	27003	27056	44776	44776					0.06457701023077789
LETRRELM	8	Unmodified	_LETRRELM_					0	0	0			REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8211669921875	2	524.284408	1046.55426	-0.93602	-0.00049074	-2.638	-0.001383	-3.574	-0.0018738	524.283162518563	48.413	0.69086	48.315	48.002	48.693	-0.097553					45	18	5	0	0	0	0.027866	1	4762	4762		84.916	10.66	1	1502100	+		39287	25575	27004	27057	44777	44777					0.03284901457095657
LETSFKALL	9	Unmodified	_LETSFKALL_					0	0	0			REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.28228759765625	2	511.30005	1020.58555	0.33818	0.00017291	-0.042408	-2.1683E-05	0.29577	0.00015123	511.2996852579492	55.735	0.85285	55.735	55.182	56.035	0					37	23	3	0	0	0	0.024541	1	6214	6214		14.137	0	1	332480	+		39288	36145	27005	27058	44778	44778					0.07607797762852897
LETSFKALL	9	Unmodified	_LETSFKALL_					0	0	0			REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.30005	1020.58555	-0.94618	-0.00048378	0.62379	0.00031894	-0.32239	-0.00016484	511.3001510291027	55.723	0.39755	55.566	55.386	55.783	-0.15656	-0.063199	-0.00017249	NaN	14.137	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160480	+		39289	36145	27005	27058							0.07607797762852897
LETSFKALL	9	Unmodified	_LETSFKALL_					0	0	0			REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.30005	1020.58555	-0.17624	-9.0111E-05	-0.10113	-5.1708E-05	-0.27737	-0.00014182	511.29975827679226	55.865	0.43642	55.649	55.372	55.808	-0.21607	0.019076	-0.00091379	NaN	14.137	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214150	+		39290	36145	27005	27058							0.07607797762852897
LETSFKALL	9	Unmodified	_LETSFKALL_					0	0	0			REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	REV__IFNA21|p.E106A|1|0.2|ENSG00000137080|chr9:21166296-21166296|T/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.30005	1020.58555	-1.2157	-0.00062156	1.4229	0.00072755	0.20729	0.00010599	511.30045597294617	55.856	0.47751	55.641	55.373	55.851	-0.21551	0.011233	0.00064472	NaN	14.137	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191060	+		39291	36145	27005	27058							0.07607797762852897
LETSLHVL	8	Unmodified	_LETSLHVL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.26318359375	2	456.263468	910.512382	0.38101	0.00017384	-0.18159	-8.2853E-05	0.19942	9.0988E-05	456.2632203086326	63.734	1.0277	63.476	63.122	64.15	-0.25824					59	26	4	0	0	0	0.34431	1	7213	7213		104.94	12.754	1	3062900			39292	1175	27006	27059	44779	44779					0.053546690402299646
LETSRIQNT	9	Unmodified	_LETSRIQNT_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3318481445312	2	531.28292	1060.55129	-0.021334	-1.1334E-05	3.9996	0.0021249	3.9783	0.0021136	531.2849814028458	79.91	1.0877	79.759	78.984	80.071	-0.15051					32	15	3	0	0	0	0.024484	1	9478	9478		30.318	0	1	494580			39293	3855	27007	27060	44780	44780					0.02343349603961542
LETSSKEFW	9	Unmodified	_LETSSKEFW_					0	0	0		ENSG00000204022|ENST00000371939|LIPJ	ENSG00000204022|ENST00000371939|LIPJ	ENSG00000204022|ENST00000371939|LIPJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.3177490234375	2	563.774396	1125.53424	-0.24478	-0.000138	1.3765	0.00077606	1.1318	0.00063806	563.774848343919	61.852	0.80407	61.595	61.133	61.937	-0.25725					41	19	3	0	0	0	0.02435	1	6949	6949		42.396	1.618	1	882630			39294	10294	27008	27061	44781	44781					-0.023505710018298487
LETSSLYWRH	10	Unmodified	_LETSSLYWRH_					0	0	0			REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.2660827636719	3	431.219172	1290.63569	0.49064	0.00021157	3.2262	0.0013912	3.7168	0.0016028	431.55440332108344	21.209	0.68489	21.018	20.735	21.42	-0.19072					16	13	3	0	0	0	0.03519	1	605	605		22.58	4.7465	1	28956	+		39295	36791	27009	27062	44782	44782					0.001993004207179183
LETTIINKVF	10	Unmodified	_LETTIINKVF_					0	0	0			REV__ENST00000548636.1_1_12:96377625-96379703:-|nuORF	REV__ENST00000548636.1_1_12:96377625-96379703:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3435668945312	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.1307	1	11654	11654		26.693	0.62953	1	17343000	+		39296	20730	27010	27063	44783	44783					0.09415427371413898
LETVFKISP	9	Unmodified	_LETVFKISP_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3236083984375	2	517.30005	1032.58555	1.2031	0.00062238	0.47082	0.00024356	1.674	0.00086594	517.3001303273383	63.83	0.75336	63.83	63.485	64.238	0					47	20	3	0	0	0	0.0242	1	7475	7475		60.118	0	1	2231100			39297	10058	27011	27064	44784	44784					0.07055797762859584
LETVLINAR	9	Unmodified	_LETVLINAR_					0	0	0			REV__nc|ENSG00000132600|Q9NVM4-3|PRMT7	REV__nc|ENSG00000132600|Q9NVM4-3|PRMT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7902221679688	2	514.808574	1027.60259	-0.090463	-4.6571E-05	1.4639	0.00075365	1.3735	0.00070708	514.8088185238284	41.335	0.13771	41.335	41.258	41.396	0					6	3	2	0	0	0	0.024405	1	3705	3705		20.947	6.0821	1	77819	+		39298	23296	27012	27065	44785	44785					0.08989718368638933
LETVRKNL	8	Unmodified	_LETVRKNL_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7955017089844	2	486.795466	971.57638	1.1128	0.00054171	-0.85442	-0.00041593	0.25839	0.00012578	486.7949381412144	20.074	0.82721	19.873	19.653	20.48	-0.2001					39	16	4	0	0	0	0.71063	1	498	498		66.429	0	1	690420			39299	1101;15776	27013	27066	44786	44786					0.08945449197187827
LETWVVLL	8	Unmodified	_LETWVVLL_					0	0	0			REV__nc|ENSG00000135074|Q9H013|ADAM19	REV__nc|ENSG00000135074|Q9H013|ADAM19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7686767578125	2	486.791861	971.569169	-0.00049232	-2.3966E-07	-2.7631	-0.0013451	-2.7636	-0.0013453	486.79032808297114	67.541	0.82807	67.303	66.958	67.787	-0.23814					30	19	2	0	0	0	0.027866	1	7802	7802		28.254	4.0515	1	200600	+		39300	36684	27014	27067	44787	44787					0.08224716596760118
LEVADAFRF	9	Unmodified	_LEVADAFRF_					0	0	0			REV__ENSG00000183921|ENST00000602312|SDR42E2	REV__ENSG00000183921|ENST00000602312|SDR42E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2426147460938	2	534.279649	1066.54475	-0.87949	-0.0004699	2.7707	0.0014803	1.8912	0.0010104	534.2806574550601	56.042	0.49187	55.886	55.643	56.135	-0.15656					16	12	2	0	0	0	0.024397	1	6084	6084		31.53	0	1	95527	+		39301	27625	27015	27068	44788	44788					0.014134564432424668
LEVCSIVE	8	Unmodified	_LEVCSIVE_					0	0	0			REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	446.7493896484375	2	446.228236	890.44192	-0.3059	-0.0001365	3.3109	0.0014774	3.0051	0.0013409	446.2270757269001	31.234	0.35905	30.993	30.753	31.112	-0.24109					13	8	3	0	0	0	0.027866	1	2033	2033		7.6903	0	1	38739	+		39302	21484	27016	27069	44789	44789					-0.007683723397235553
LEVDEWRATW	10	Unmodified	_LEVDEWRATW_					0	0	0		nc|ENSG00000140688|Q96GQ5-2|RUSF1;ENST00000568491.1_1_16:31502158-31504599:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	nc|ENSG00000140688|Q96GQ5-2|RUSF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.5479431152344	3	435.547177	1303.6197	-0.65192	-0.00028394	0.629	0.00027396	-0.022921	-9.983E-06	435.54736292907126	29.627	1.2233	29.382	29.099	30.322	-0.24524					78	28	4	0	0	0	0.99657	1	1856	1856		46.457	12.37	1	1920100			39303	5436	27017	27070	44790	44790					-0.019964058162031506
LEVDFFLF	8	Unmodified	_LEVDFFLF_					0	0	0		ENST00000566220.1_1_22:31367482-31368995:+|nuORF	ENST00000566220.1_1_22:31367482-31368995:+|nuORF	ENST00000566220.1_1_22:31367482-31368995:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.290283203125	2	515.268219	1028.52188	0.016739	8.6253E-06	-3.6681	-0.00189	-3.6513	-0.0018814	515.2660969331886	70.13	0.41255	69.879	69.691	70.103	-0.25063					15	9	2	0	0	0	0.027866	1	8190	8190		33.516	13.034	1	82624			39304	16940	27018	27071	44791	44791					0.008764373257463376
LEVEITKIR	9	Unmodified	_LEVEITKIR_					0	0	0		ENST00000551446.5_3_12:104529274-104531972:-|nuORF	ENST00000551446.5_3_12:104529274-104531972:-|nuORF	ENST00000551446.5_3_12:104529274-104531972:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3084716796875	2	550.837331	1099.66011	-0.28245	-0.00015558	-0.030841	-1.6988E-05	-0.31329	-0.00017257	550.8371579021366	49.814	0.25681	49.814	49.656	49.913	0					10	6	2	0	0	0	0.024539	1	5163	5163		20.947	2.6848	1	107610			39305	16601	27019	27072	44792	44792					0.11426560574227551
LEVEVIRA	8	Unmodified	_LEVEVIRA_					0	0	0		nc|ENSG00000079841|Q86UR5-10|RIMS1;nc|ENSG00000079841|Q86UR5-9|RIMS1;nc|ENSG00000079841|Q86UR5-12|RIMS1;ENSG00000079841|ENST00000521978|RIMS1;ENST00000431478.2_1_6:73100573-73110413:+|nuORF;nc|ENSG00000079841|Q86UR5-11|RIMS1;nc|ENSG00000079841|Q86UR5-13|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1	nc|ENSG00000079841|Q86UR5-10|RIMS1	nc|ENSG00000079841|Q86UR5-10|RIMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.77728271484375	2	464.776742	927.538931	0.45052	0.00020939	-2.9553	-0.0013735	-2.5048	-0.0011642	464.77620267260727	73.264	0.61356	73.274	72.944	73.558	0.0096512					36	15	3	0	0	0	0.027866	1	8897	8897		7.1934	0	1	884280			39306	1677	27020	27073	44793	44793					0.07226357931563143
LEVIDRHGE	9	Unmodified	_LEVIDRHGE_					0	0	0			REV__ANKRD50|p.I1094Sfs*12|1|0.07|ENSG00000151458|chr4:124669997-124669998|-/CAAATAGCTCTGGTAGTACTGGTGGAGGGGA|frameshift_variant	REV__ANKRD50|p.I1094Sfs*12|1|0.07|ENSG00000151458|chr4:124669997-124669998|-/CAAATAGCTCTGGTAGTACTGGTGGAGGGGA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.31787109375	2	534.277638	1066.54072	-1.5449	-0.00082539	1.727	0.00092268	0.18211	9.7296E-05	534.2785453709281	33.608	0.55525	33.442	33.156	33.711	-0.16565					25	13	3	0	0	0	0.024405	1	2395	2395		27.882	5.9224	1	341560	+		39307	19146	27021	27074	44794	44794					0.010113669495467548
LEVINQQDS	9	Unmodified	_LEVINQQDS_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.261653	1044.50875	0.45563	0.00023841	-2.1456	-0.0011227	-1.69	-0.00088431	523.2605897622522	87.868	0.32827	87.732	87.431	87.76	-0.13613					9	7	2	0	0	0	0.024397	1	10708	10708		39.253	0	1	50395			39308	9617	27022	27075	44795	44795					-0.011720455242766548
LEVKRVQDIL	10	Unmodified	_LEVKRVQDIL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.56793212890625	3	404.915201	1211.72377	1.4199	0.00057493	-0.72482	-0.00029349	0.69505	0.00028144	404.9148092061524	42.255	0.58893	42.255	42.053	42.642	0					32	16	3	0	0	0	0.03519	1	3856	3856		32.751	5.7032	1	294030			39309	1558	27023	27076	44796	44796					0.12637921011332764
LEVKSRISN	9	Unmodified	_LEVKSRISN_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3038940429688	2	523.303655	1044.59276	-0.30343	-0.00015878	-0.91784	-0.00048031	-1.2213	-0.00063909	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.5973	2	11043	11043;11091		52.937	5.0211	1	11993000	+		39310	20703	27024	27077	44797;44798	44797					0.07224530363305348
LEVKSRISN	9	Unmodified	_LEVKSRISN_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3034057617188	2	523.303655	1044.59276	0.13302	6.9608E-05	-1.6088	-0.00084187	-1.4758	-0.00077227	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.42604	1	11051	11051		64.207	10.856	1	10615000	+		39311	20703	27024	27077	44799	44799					0.07224530363305348
LEVKSRISN	9	Unmodified	_LEVKSRISN_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3028564453125	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.72494	1	10973	10973		44.377	0.26039	1	11897000	+		39312	20703	27024	27077	44800	44800					0.07224530363305348
LEVKSRISN	9	Unmodified	_LEVKSRISN_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3034057617188	2	523.303655	1044.59276	-0.39587	-0.00020716	-0.06527	-3.4156E-05	-0.46114	-0.00024131	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.80003	1	10675	10675		39.253	2.0937	1	14072000	+		39313	20703	27024	27077	44801	44801					0.07224530363305348
LEVKTLCS	8	Unmodified	_LEVKTLCS_					0	0	0			REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.742431640625	2	446.744053	891.473554	-0.29686	-0.00013262	-3.2538	-0.0014536	-3.5507	-0.0015863	446.7424988443532	81.687	1.143	81.687	81.178	82.321	0					66	27	3	0	0	0	0.56592	3	10192	10168;10180;10192		79.451	0	1	1894300	+		39314	26156	27025	27078	44802;44803;44804	44804					0.023476204142184542
LEVKTLCS	8	Unmodified	_LEVKTLCS_					0	0	0			REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.742431640625	2	446.744053	891.473554	0.20475	9.1469E-05	-3.8466	-0.0017184	-3.6419	-0.001627	446.7422026263838	81.83	1.1873	81.699	81.258	82.445	-0.13075					62	28	3	0	0	0	0.56592	2	10174	10174;10188		79.451	0	1	1846200	+		39315	26156	27025	27078	44805;44806	44805					0.023476204142184542
LEVKTLCS	8	Unmodified	_LEVKTLCS_					0	0	0			REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.742431640625	2	446.744053	891.473554	-0.50502	-0.00022562	-3.0993	-0.0013846	-3.6043	-0.0016102	446.74255697874145	81.692	1.2276	81.718	81.088	82.315	0.025711					62	29	3	0	0	0	0.27973	3	10099	10099;10111;10123		120.62	0	1	2219400	+		39316	26156	27025	27078	44807;44808;44809	44807					0.023476204142184542
LEVKVKDPPKG	11	Unmodified	_LEVKVKDPPKG_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.3607177734375	2	605.363713	1208.71287	-1.6021	-0.00096982	-1.9138	-0.0011585	-3.5159	-0.0021284	605.362384872011	106.96	0.39161	106.82	106.62	107.01	-0.1346					27	16	2	0	0	0	1.0465	1	13285	13285		26.063	2.5407	1	70595			39317	774	27026	27079	44810	44810					0.11686518637020527
LEVLEDIIGF	10	Unmodified	_LEVLEDIIGF_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.3161010742188	2	574.315897	1146.61724	-0.24421	-0.00014025	1.0901	0.00062607	0.84591	0.00048582	574.3163631344225	56.926	0.74096	56.762	56.459	57.2	-0.16431					50	20	4	0	0	0	1.0004	1	6346	6346		45.952	3.0877	1	4088000			39318	10167	27027	27080	44811	44811					0.04979745726177498
LEVLHETLS	9	Unmodified	_LEVLHETLS_					0	0	0		ENST00000473007.7_3_7:43988324-43992374:+|nuORF	ENST00000473007.7_3_7:43988324-43992374:+|nuORF	ENST00000473007.7_3_7:43988324-43992374:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3019409179688	2	520.784764	1039.55498	-1.3289	-0.00069209	1.5081	0.00078542	0.17922	9.3335E-05	520.785444043125	60.599	0.81419	60.599	60.33	61.144	0					63	21	4	0	0	0	0.024381	1	6998	6998		37.159	0	1	3513500			39319	15000	27028	27081	44812	44812					0.03678019377821329
LEVLIYGFSP	10	Unmodified	_LEVLIYGFSP_					0	0	0		ENST00000261507.10_1_4:166263245-166263440:+|nuORF	ENST00000261507.10_1_4:166263245-166263440:+|nuORF	ENST00000261507.10_1_4:166263245-166263440:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2673950195312	2	569.313158	1136.61176	0.37462	0.00021328	-3.706	-0.0021099	-3.3314	-0.0018966	569.3110088242225	78.572	0.77316	78.34	77.963	78.736	-0.23141					24	17	2	0	0	0	0.03519	1	9402	9402		40.778	0	1	88741			39320	11475	27029	27082	44813	44813					0.04892066934326067
LEVLSRLPV	9	Unmodified	_LEVLSRLPV_					0	0	0			REV__ENST00000531934.5_1_2:71297680-71299860:+|nuORF	REV__ENST00000531934.5_1_2:71297680-71299860:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2689819335938	2	513.321317	1024.62808	-0.74823	-0.00038408	0.57891	0.00029717	-0.16932	-8.6918E-05	513.3215379821289	79.302	0.83372	79.13	78.861	79.695	-0.17226					30	19	2	0	0	0	0.024021	1	9849	9849		68.787	28.009	1	173000	+		39321	34569	27030	27083	44814	44814					0.11675192891084407
LEVLSRLPV	9	Unmodified	_LEVLSRLPV_					0	0	0			REV__ENST00000531934.5_1_2:71297680-71299860:+|nuORF	REV__ENST00000531934.5_1_2:71297680-71299860:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.321317	1024.62808	0.1753	8.9984E-05	-0.27572	-0.00014153	-0.10042	-5.1549E-05	513.3210772483094	79.093	0.62487	78.862	78.607	79.232	-0.23141	-0.14175	-0.00023392	NaN	96.19	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138390	+		39322	34569	27030	27083							0.11675192891084407
LEVLSRLPV	9	Unmodified	_LEVLSRLPV_					0	0	0			REV__ENST00000531934.5_1_2:71297680-71299860:+|nuORF	REV__ENST00000531934.5_1_2:71297680-71299860:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.321317	1024.62808	0.12307	6.3172E-05	-0.38947	-0.00019993	-0.26641	-0.00013675	513.3209892299843	78.985	0.45878	78.834	78.693	79.151	-0.15144	-0.16942	-0.00035071	NaN	96.19	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74090	+		39323	34569	27030	27083							0.11675192891084407
LEVLTIHYA	9	Unmodified	_LEVLTIHYA_					0	0	0			REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7966918945312	2	529.797675	1057.5808	0.22344	0.00011838	-4.1339	-0.0021901	-3.9104	-0.0020717	529.7953684253378	21.74	0.76363	21.563	21.303	22.066	-0.17721					33	15	3	0	0	0	0.78069	1	710	710		40.573	1.3198	1	377340	+		39324	22678	27031	27084	44815	44815					0.05430913620079991
LEVLYPRSL	9	Unmodified	_LEVLYPRSL_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3154907226562	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.70156	1	11450	11450		45.972	1.5951	1	12792000	+		39325	21788	27032	27085	44816	44816					0.08222889028479585
LEVNLPAL	8	Unmodified	_LEVNLPAL_					0	0	0			REV__nc|ENSG00000186049|Q86Y46-2|KRT73;REV__CON__Q6IME9	REV__nc|ENSG00000186049|Q86Y46-2|KRT73	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7592468261719	2	434.760561	867.506569	-0.024733	-1.0753E-05	-2.9583	-0.0012862	-2.983	-0.0012969	434.759197201521	21.498	1.5447	21.569	21.106	22.651	0.071487					78	31	4	0	0	0	0.77775	1	623	623		60.972	8.6728	1	1542400	+	+	39326	37022;19595	27033	27086	44817	44817					0.06751570528570028
LEVQIWLP	8	Unmodified	_LEVQIWLP_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80340576171875	2	499.289485	996.564418	-0.20747	-0.00010359	0.5526	0.00027591	0.34513	0.00017232	499.28965943591834	52.92	0.18435	52.92	52.827	53.011	0					5	4	2	0	0	0	0.027866	1	5684	5684		50.025	0	1	73329	+		39327	36888	27034	27087	44818	44818					0.06599832453991894
LEVQKKWQ	8	Unmodified	_LEVQKKWQ_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	529.803291	1057.59203	-1.0984	-0.00058196	-3.6543	-0.0019361	-4.7528	-0.002518	529.8014693870106	48.647	0.41693	48.647	48.378	48.795	0					19	11	2	0	0	0	0.027866	1	4936	4936		18.324	0	1	260900			39328	1684	27035	27088	44819	44819					0.06553735714237519
LEVQLKTVK	9	Unmodified	_LEVQLKTVK_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3054809570312	2	529.334424	1056.6543	-0.48713	-0.00025786	3.7686	0.0019948	3.2815	0.001737	529.336278149656	64.404	0.15817	64.17	64.098	64.256	-0.2345					6	3	2	0	0	0	0.024523	1	7315	7315		15.642	0	1	57423	+		39329	21094;36411	27036	27089	44820	44820					0.12823462062578983
LEVQPATFR	9	Unmodified	_LEVQPATFR_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7586059570312	2	530.792924	1059.57129	0.28432	0.00015092	3.8792	0.0020591	4.1636	0.00221	530.7946394591071	96.618	1.0514	96.625	96.228	97.279	0.0065079					52	23	3	0	0	0	0.023842	1	12319	12319		67.494	19.578	1	237090	+		39330	21502	27037	27090	44821	44821					0.04389145334562272
LEVQSLRSN	9	Unmodified	_LEVQSLRSN_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN;ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	nc|ENSG00000157766|P16112-3|ACAN;ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3043212890625	2	523.285463	1044.55637	0.11853	6.2023E-05	-1.9766	-0.0010343	-1.858	-0.00097229	523.2841542244087	87.39	0.21109	87.354	87.236	87.447	-0.035355					6	4	2	0	0	0	0.024261	1	10965	10965		54.776	15.97	1	39453			39331	6621;14	27038	27091	44822	44822					0.03587653466570373
LEVQVCSTATC	11	Unmodified	_LEVQVCSTATC_					0	0	0			REV__ENST00000505306.5_1_17:48133647-48154208:+|nuORF;REV__nc|ENSG00000005884|P26006-1|ITGA3	REV__nc|ENSG00000005884|P26006-1|ITGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.2987060546875	2	577.265024	1152.5155	0.11768	6.7932E-05	0.55198	0.00031864	0.66966	0.00038657	577.2651194239961	19.888	1.9607	19.727	18.54	20.501	-0.1608					62	39	2	0	0	0	0.024762	1	458	458		37.812	0	1	36267	+		39332	36428;34007	27039	27092	44823	44823					-0.05466191959544631
LEVRDEVA	8	Unmodified	_LEVRDEVA_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2379455566406	2	465.748182	929.481811	-0.26299	-0.00012249	2.7539	0.0012826	2.4909	0.0011602	465.7491530829905	30.16	0.58251	30.234	29.92	30.502	0.074314					25	13	2	0	0	0	0.027866	1	1822	1822		18.324	0	1	485150			39333	1574	27040	27093	44824	44824					0.014248906551983964
LEVRRDLSW	9	Unmodified	_LEVRRDLSW_					0	0	0			REV__LSAMP|p.P82R|1|0.39|ENSG00000185565|chr3:116086467-116086467|G/C|missense_variant	REV__LSAMP|p.P82R|1|0.39|ENSG00000185565|chr3:116086467-116086467|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	587.2957153320312	2	587.32238	1172.63021	0.29836	0.00017524	3.8037	0.002234	4.1021	0.0024093	587.3236952022121	74.02	0.30089	74.03	73.837	74.138	0.0096512					9	6	2	0	0	0	0.024477	1	8963	8963		35.618	2.8059	1	276920	+		39334	36334	27041	27094	44825	44825					0.05079621628897257
LEVRRDLSW	9	Unmodified	_LEVRRDLSW_					0	0	0			REV__LSAMP|p.P82R|1|0.39|ENSG00000185565|chr3:116086467-116086467|G/C|missense_variant	REV__LSAMP|p.P82R|1|0.39|ENSG00000185565|chr3:116086467-116086467|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	587.32238	1172.63021	-0.25811	-0.00015159	-4.898	-0.0028767	-5.1561	-0.0030283	587.319753357349	74.596	0.30543	74.32	74.132	74.438	-0.27573	0.20326	-0.0051174	NaN	44.117	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123580	+		39335	36334	27041	27094							0.05079621628897257
LEVSPHGGCRV	11	Carbamidomethyl (C)	_LEVSPHGGC(Carbamidomethyl (C))RV_	LEVSPHGGC(1)RV		LEVSPHGGC(52)RV		0	1	0			REV__ENSG00000273238|ENST00000610212|TMEM271	REV__ENSG00000273238|ENST00000610212|TMEM271	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2039489746094	3	404.204757	1209.59244	0.24163	9.767E-05	-3.1519	-0.001274	-2.9102	-0.0011763	404.2034091483835	60.726	0.92125	60.52	60.254	61.175	-0.20599					54	22	3	0	0	0	0.89117	1	6765	6765		52.167	7.79	1	2261100	+		39336	29174	27042	27095	44826	44826	384				-0.003972126282405952
LEVSPHGGCRV	11	Carbamidomethyl (C)	_LEVSPHGGC(Carbamidomethyl (C))RV_					0	1	0			REV__ENSG00000273238|ENST00000610212|TMEM271	REV__ENSG00000273238|ENST00000610212|TMEM271	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.204757	1209.59244	0.49225	0.00019897	-3.5252	-0.0014249	-3.033	-0.0012259	404.203218354854	60.459	0.77757	60.459	60.181	60.958	0	-0.032536	-0.00072357	NaN	52.167	51	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2554900	+		39337	29174	27042	27095			384				-0.003972126282405952
LEVSPHGGCRV	11	Carbamidomethyl (C)	_LEVSPHGGC(Carbamidomethyl (C))RV_					0	1	0			REV__ENSG00000273238|ENST00000610212|TMEM271	REV__ENSG00000273238|ENST00000610212|TMEM271	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	404.204757	1209.59244	-0.062097	-2.51E-05	-2.8073	-0.0011347	-2.8694	-0.0011598	404.2034570862471	60.71	0.86404	60.496	60.196	61.06	-0.21339	0.0050338	0.000147	NaN	52.167	62	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2010100	+		39338	29174	27042	27095			384				-0.003972126282405952
LEVSPHGGCRV	11	Carbamidomethyl (C)	_LEVSPHGGC(Carbamidomethyl (C))RV_					0	1	0			REV__ENSG00000273238|ENST00000610212|TMEM271	REV__ENSG00000273238|ENST00000610212|TMEM271	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	404.204757	1209.59244	0.14238	5.755E-05	-2.939	-0.001188	-2.7966	-0.0011304	404.2033732416549	60.354	0.86489	60.433	60.165	61.029	0.078884	-0.058213	-1.2701E-05	NaN	52.167	63	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2465900	+		39339	29174	27042	27095			384				-0.003972126282405952
LEVVKFLL	8	Unmodified	_LEVVKFLL_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-5|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-16|ANK1	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000029534|P16157-14|ANK1	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.8005065917969	2	480.810054	959.605554	-0.094106	-4.5247E-05	2.893	0.001391	2.7989	0.0013457	480.8111311581053	94.209	0.11754	94.209	94.15	94.267	-0.00022888					6	2	3	0	0	0	0.027866	1	11949	11949		20.482	0	1	171320			39340	6183;18381;18041	27043	27096	44827	44827					0.12413593493488406
LEWAWLAT	8	Unmodified	_LEWAWLAT_					0	0	0			REV__ENST00000507123.1_1_4:8201036-8206947:+|nuORF	REV__ENST00000507123.1_1_4:8201036-8206947:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2903747558594	2	495.258185	988.501818	-0.40279	-0.00019948	-3.478	-0.0017225	-3.8808	-0.001922	495.2563504780315	61.913	0.9202	61.699	61.209	62.13	-0.21375					39	22	3	0	0	0	0.027866	1	6906	6906		24.203	0	1	696950	+		39341	34042	27044	27097	44828	44828					0.007106863857984536
LEWEIAQV	8	Unmodified	_LEWEIAQV_					0	0	0		ENST00000553164.1_1_12:56708586-56709779:-|nuORF;nc|ENSG00000257727|Q9Y2B0-2|CNPY2;ENST00000551276.1_1_12:56706564-56708983:-|nuORF;ENSG00000257727|ENST00000273308|CNPY2;ENST00000551720.5_1_12:56705137-56708739:-|nuORF;ENST00000546388.1_1_12:56708586-56708889:-|nuORF	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.78302001953125	2	494.260925	986.507297	-0.63629	-0.00031449	-1.7306	-0.00085535	-2.3668	-0.0011698	494.259632801062	83.028	2.2683	83.054	82.066	84.334	0.02655					74	52	3	0	0	0	0.027866	1	10255	10255		51.335	19.381	1	450940			39342	16632	27045	27098	44829	44829					0.01350365177609092
LEWFSDSSV	9	Unmodified	_LEWFSDSSV_					0	0	0			REV__ENST00000445706.5_1_22:43305529-43308086:-|nuORF	REV__ENST00000445706.5_1_22:43305529-43308086:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3181762695312	2	535.245472	1068.47639	-0.34006	-0.00018202	-3.3208	-0.0017774	-3.6609	-0.0019595	535.2437919836389	33.806	0.44074	33.581	33.321	33.762	-0.22412					17	10	3	0	0	0	0.024487	1	2425	2425		24.203	0	1	97439	+		39343	32621	27046	27099	44830	44830					-0.05510832927279807
LEWKPDAPL	9	Unmodified	_LEWKPDAPL_					0	0	0			REV__FGFR3-TACC3|6|fusion	REV__FGFR3-TACC3|6|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2467041015625	2	534.78985	1067.56515	-0.8861	-0.00047388	3.4879	0.0018653	2.6018	0.0013914	534.7916900258463	34.578	0.96777	34.578	34.05	35.018	0					55	24	3	0	0	0	0.024025	1	2603	2603		62.107	16.155	1	1051200	+		39344	36040	27047	27100	44831	44831					0.034066271030496864
LEWSHSFSSPE	11	Unmodified	_LEWSHSFSSPE_					0	0	0			REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF	REV__ENST00000489665.1_1_7:2742357-2804491:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.7976989746094	3	435.863053	1304.56733	-0.032162	-1.4018E-05	-2.0222	-0.00088142	-2.0544	-0.00089544	435.86207886842396	22.233	1.6846	22.031	20.783	22.468	-0.20198					55	34	3	0	0	0	0.024727	1	721	721		23.378	0	1	75945	+		39345	33677	27048	27101	44832	44832					-0.07276988949797669
LEWSSHRLLH	10	Unmodified	_LEWSSHRLLH_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|229|1|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|229|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	639.3425903320312	2	639.341104	1276.66765	0.894	0.00057157	1.8011	0.0011515	2.6951	0.0017231	639.8434620593274	103.4	0.50526	103.4	103.22	103.73	0.0054245					30	12	3	0	0	0	1.1267	1	13267	13267		29.15	4.6304	1	137730	+		39346	36241	27049	27102	44833	44833					0.04038712894521268
LEYDARVRST	10	Unmodified	_LEYDARVRST_					0	0	0		nc|ENSG00000196505|Q9NXN4-2|GDAP2	nc|ENSG00000196505|Q9NXN4-2|GDAP2	nc|ENSG00000196505|Q9NXN4-2|GDAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5548400878906	3	403.878926	1208.61495	0.91385	0.00036909	0.72521	0.0002929	1.6391	0.00066198	403.87892312603645	22.304	0.79407	22.115	21.58	22.374	-0.18894					21	16	2	0	0	0	0.03519	1	792	792		32.751	6.6872	1	21128			39347	18627	27050	27103	44834	44834					0.01898710041018603
LEYGQDLSV	9	Unmodified	_LEYGQDLSV_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;nc|ENSG00000172803|Q86XE0-2|SNX32;ENST00000530101.5_1_11:65601488-65618753:+|nuORF;ENST00000526972.5_1_11:65617878-65618753:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2357177734375	2	512.253297	1022.49204	-0.08198	-4.1994E-05	0.67363	0.00034507	0.59165	0.00030307	512.2537346987409	57.886	0.49665	57.696	57.332	57.829	-0.19017					27	12	3	0	0	0	0.024359	1	6293	6293		26.063	0	1	597610			39348	8311	27051	27104	44835	44835					-0.01830546410246825
LEYHVPVT	8	Unmodified	_LEYHVPVT_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.79425048828125	2	479.255643	956.496732	-0.53254	-0.00025522	4.186	0.0020062	3.6535	0.0017509	479.2575314742411	64.798	0.6702	64.835	64.517	65.187	0.037384					23	17	2	0	0	0	0.027866	1	7587	7587		35.201	11.678	1	170640			39349	5741	27052	27105	44836	44836					0.016743825231969822
LEYKPNQL	8	Unmodified	_LEYKPNQL_					0	0	0			REV__CDH13|p.E323Q|1|0.23|ENSG00000140945|chr16:83602460-83602460|G/C|missense_variant	REV__CDH13|p.E323Q|1|0.23|ENSG00000140945|chr16:83602460-83602460|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7926330566406	2	502.7742	1003.53385	-0.26736	-0.00013442	0.52687	0.0002649	0.25951	0.00013048	502.7745039533608	63.952	0.43595	63.694	63.637	64.073	-0.25824					14	10	2	0	0	0	0.027866	1	7295	7295		42.396	1.618	1	231940	+		39350	19279	27053	27106	44837	44837					0.032220540689422705
LEYLHNYGI	9	Unmodified	_LEYLHNYGI_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4;ENSG00000105613|ENST00000251472|MAST1;nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000086015|Q6P0Q8-2|MAST2;nc|ENSG00000069020|O15021-2|MAST4;ENSG00000105613|ENST00000251472|MAST1;nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2548217773438	2	561.284931	1120.55531	1.0114	0.00056767	0.20525	0.00011521	1.2166	0.00068288	561.7846228742624	64.05	0.43023	64.05	63.845	64.275	0					17	11	2	0	0	0	0.022756	1	7519	7519		90.777	19.481	1	193920			39351	1396;1807;2698;2069	27054	27107	44838	44838					-0.00014560902354787686
LEYLHNYGI	9	Unmodified	_LEYLHNYGI_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4;ENSG00000105613|ENST00000251472|MAST1;nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000086015|Q6P0Q8-2|MAST2;nc|ENSG00000069020|O15021-2|MAST4;ENSG00000105613|ENST00000251472|MAST1;nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	561.284931	1120.55531	-0.37526	-0.00021063	-4.0398	-0.0022675	-4.415	-0.0024781	562.2872027949879	64.326	0.43089	64.098	63.949	64.38	-0.22774	0.023978	-0.0024023	NaN	90.777	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252920			39352	1396;1807;2698;2069	27054	27107							-0.00014560902354787686
LEYLPEVK	8	Unmodified	_LEYLPEVK_					0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7378234863281	2	495.778951	989.543348	-0.51366	-0.00025466	-2.9594	-0.0014672	-3.473	-0.0017219	495.7775338676291	36.418	0.38082	36.213	36.021	36.402	-0.20518					16	9	2	0	0	0	0.027866	1	2874	2874		17.365	4.4058	1	239540	+		39353	20000	27055	27108	44839	44839					0.0481582235447604
LEYMNVGDL	9	Unmodified	_LEYMNVGDL_					0	0	0		ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2691650390625	2	527.2497	1052.48485	-0.002987	-1.5749E-06	-0.81872	-0.00043167	-0.82171	-0.00043324	527.2489767618083	49.191	0.71874	49.008	48.738	49.456	-0.18206					38	18	3	0	0	0	0.024405	1	4957	4957		27.882	4.8398	1	389940			39354	16416	27056	27109	44840	44840					-0.03929602282300948
LEYMNVGDL	9	Unmodified	_LEYMNVGDL_					0	0	0		ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	527.2497	1052.48485	-0.61137	-0.00032235	-0.39176	-0.00020655	-1.0031	-0.0005289	527.2492746803257	49.032	0.4915	49.032	48.795	49.287	0	0.015667	5.8642E-06	NaN	27.882	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	809450			39355	16416	27056	27109							-0.03929602282300948
LEYMNVGDL	9	Unmodified	_LEYMNVGDL_					0	0	0		ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	527.2497	1052.48485	-0.53508	-0.00028212	-0.48485	-0.00025563	-1.0199	-0.00053776	527.2492418185003	49.196	0.61416	49.044	48.829	49.443	-0.15277	0.026945	-9.2299E-05	NaN	27.882	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662150			39356	16416	27056	27109							-0.03929602282300948
LEYMNVGDL	9	Unmodified	_LEYMNVGDL_					0	0	0		ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	527.2497	1052.48485	-0.87887	-0.00046338	0.045535	2.4009E-05	-0.83333	-0.00043937	527.2494684884872	48.901	0.65217	48.976	48.7	49.352	0.074196	-0.040951	0.00046699	NaN	27.882	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	756490			39357	16416	27056	27109							-0.03929602282300948
LEYMNVGDL	9	Unmodified	_LEYMNVGDL_					0	0	0		ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.2497	1052.48485	-0.73905	-0.00038967	-0.48232	-0.0002543	-1.2214	-0.00064397	527.2492930536002	49.065	0.68951	48.964	48.726	49.416	-0.1008	-0.052783	-8.9638E-05	NaN	27.882	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493430			39358	16416	27056	27109							-0.03929602282300948
LEYMNVGDL	9	Unmodified	_LEYMNVGDL_					0	0	0		ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENST00000540219.1_1_12:34402420-34402531:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.2497	1052.48485	-0.29436	-0.0001552	-0.43479	-0.00022924	-0.72915	-0.00038444	527.2491220717358	49.356	0.68621	49.076	48.861	49.547	-0.27977	0.05926	-3.9516E-05	NaN	27.882	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417810			39359	16416	27056	27109							-0.03929602282300948
LEYRLSNPI	9	Unmodified	_LEYRLSNPI_					0	0	0			REV__ZNF292|p.C430Y|1|0.2|ENSG00000188994|chr6:87254918-87254918|G/A|missense_variant	REV__ZNF292|p.C430Y|1|0.2|ENSG00000188994|chr6:87254918-87254918|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7828979492188	2	552.806031	1103.59751	-0.861	-0.00047596	4.2852	0.0023689	3.4242	0.0018929	552.8082360425467	82.353	0.86712	82.213	81.87	82.737	-0.14014					43	19	3	0	0	0	0.024323	1	9960	9960		35.618	0	1	729140	+		39360	37803	27057	27110	44841	44841					0.04985414506040797
LEYVYINY	8	Unmodified	_LEYVYINY_					0	0	0		ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7817993164062	2	538.768583	1075.52261	-0.46689	-0.00025155	-3.1414	-0.0016925	-3.6083	-0.001944	538.7665838490504	50.318	0.8168	50.137	49.717	50.534	-0.18071					29	21	2	0	0	0	0.027866	1	5088	5088		13.775	0	1	351510			39361	10987	27058	27111	44842	44842					-0.012127680251978745
LEYYTDIMHTL	11	Unmodified	_LEYYTDIMHTL_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.738525390625	3	466.891844	1397.6537	-0.18848	-8.8E-05	1.4811	0.0006915	1.2926	0.0006035	466.89250893314335	23.557	0.89104	23.377	23.067	23.958	-0.17989					45	20	3	0	0	0	0.024731	1	960	960		30.569	12.736	1	594900			39362	9894	27059	27112	44843	44843					-0.02921745439471124
LFAAANKLVL	10	Unmodified	_LFAAANKLVL_					0	0	0			REV__nc|ENSG00000188120|Q9NQZ3-2|DAZ1	REV__nc|ENSG00000188120|Q9NQZ3-2|DAZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.305419921875	2	530.331685	1058.64882	-1.3679	-0.00072545	0.96158	0.00050996	-0.40634	-0.00021549	530.3319563819864	48.756	0.89718	48.476	48.076	48.973	-0.27977					60	24	4	0	0	0	0.03519	1	4783	4783		23.042	10.083	1	2016900	+		39363	37038	27060	27113	44844	44844					0.12183783270734239
LFAAIALINNA	11	Unmodified	_LFAAIALINNA_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.8323364257812	2	565.832049	1129.64954	0.30285	0.00017136	0.1432	8.1028E-05	0.44605	0.00025239	565.8320318847526	81.362	0.83391	81.169	80.8	81.634	-0.19334					44	19	3	0	0	0	0.9749	1	9786	9786		42.396	9.5837	1	539510	+		39364	23052	27061	27114	44845	44845					0.089905779198034
LFAAIALINNA	11	Unmodified	_LFAAIALINNA_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.832049	1129.64954	-1.0264	-0.00058075	4.1119	0.0023266	3.0855	0.0017459	565.8341757122059	81.45	0.32642	81.319	81.135	81.461	-0.13075	0.11005	0.0039539	NaN	42.396	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50036	+		39365	23052	27061	27114							0.089905779198034
LFAAIALINNA	11	Unmodified	_LFAAIALINNA_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.832049	1129.64954	0.24596	0.00013917	0.38407	0.00021732	0.63003	0.00035649	565.8322175897019	81.41	0.79123	81.181	80.816	81.608	-0.2289	-0.027962	-0.00026474	NaN	42.396	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610570	+		39366	23052	27061	27114							0.089905779198034
LFAAIALINNA	11	Unmodified	_LFAAIALINNA_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	565.832049	1129.64954	0.30285	0.00017136	0.1432	8.1028E-05	0.44605	0.00025239	565.8320318847526	81.362	0.83391	81.169	80.8	81.634	-0.19334	-0.039689	-0.00053732	NaN	42.396	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539510	+		39367	23052	27061	27114							0.089905779198034
LFAAIALINNA	11	Unmodified	_LFAAIALINNA_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	565.832049	1129.64954	-0.47304	-0.00026766	1.1051	0.00062531	0.63207	0.00035764	565.8325596684097	81.309	0.71133	81.166	80.858	81.57	-0.14248	-0.042401	0.00055123	NaN	42.396	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459760	+		39368	23052	27061	27114							0.089905779198034
LFAAQGQQL	9	Unmodified	_LFAAQGQQL_					0	0	0			REV__ENST00000374514.7_1_1:24121372-24121519:+|nuORF	REV__ENST00000374514.7_1_1:24121372-24121519:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2496643066406	2	488.266542	974.51853	-0.80891	-0.00039496	0.36939	0.00018036	-0.43952	-0.0002146	488.2661452580443	33.502	0.39925	33.337	33.156	33.555	-0.16565					14	9	2	0	0	0	0.024354	1	2379	2379		47.916	1.9636	1	79173	+		39369	31298	27062	27115	44846	44846					0.030251872717599326
LFAELYPL	8	Unmodified	_LFAELYPL_					0	0	0			REV__ENST00000228506.7_1_12:121134890-121134920:+|nuORF	REV__ENST00000228506.7_1_12:121134890-121134920:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2700500488281	2	483.270761	964.52697	-0.41707	-0.00020156	-3.483	-0.0016833	-3.9001	-0.0018848	483.26912384690826	83.13	1.507	83.13	82.793	84.3	0					95	34	5	0	0	0	0.54157	1	10365	10365		81.716	0	1	10967000	+		39370	29392	27063	27116	44847	44847					0.04328741188373897
LFAEVTFII	9	Unmodified	_LFAEVTFII_					0	0	0			REV__nc|ENSG00000151067|Q13936-17|CACNA1C	REV__nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.80224609375	2	526.804968	1051.59538	-0.67997	-0.00035821	-3.2191	-0.0016958	-3.899	-0.002054	526.803106718843	76.486	0.92637	76.258	75.927	76.853	-0.22843					68	22	5	0	0	0	0.43973	1	9415	9415		63.306	7.8021	1	3284800	+		39371	24748	27064	27117	44848	44848					0.07164985768235965
LFAFALLL	8	Unmodified	_LFAFALLL_					0	0	0			REV__ENSG00000129667|ENST00000675367|RHBDF2	REV__ENSG00000129667|ENST00000675367|RHBDF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.26641845703125	2	454.286214	906.557876	0.35113	0.00015951	2.6123	0.0011867	2.9635	0.0013463	454.28761999699464	63.439	0.23448	63.181	63.041	63.276	-0.25824					8	5	2	0	0	0	0.027866	1	7137	7137		33.493	0	1	80615	+		39372	23057	27065	27118	44849	44849					0.1008593929327617
LFAFLSQIL	9	Unmodified	_LFAFLSQIL_					0	0	0			REV__ENSG00000103044|ENST00000569188|HAS3	REV__ENSG00000103044|ENST00000569188|HAS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7772216796875	2	526.312961	1050.61137	-1.3267	-0.00069826	1.5207	0.00080036	0.19399	0.0001021	526.8145576690936	49.304	0.29794	49.378	49.242	49.54	0.074192					11	7	2	0	0	0	0.024539	1	5026	5026		20.947	0	1	143470	+		39373	21349	27066	27119	44850	44850					0.08808692005163721
LFAGLFFV	8	Unmodified	_LFAGLFFV_					0	0	0		ENST00000427025.6_2_6:138893064-138893121:-|nuORF	ENST00000427025.6_2_6:138893064-138893121:-|nuORF	ENST00000427025.6_2_6:138893064-138893121:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2645263671875	2	457.262739	912.510926	-0.036935	-1.6889E-05	3.5359	0.0016168	3.499	0.0016	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.9599	1	10169	10169		43.626	2.8479	1	3048400			39374	14100	27067	27120	44851	44851					0.051170797421377756
LFAHLWQV	8	Unmodified	_LFAHLWQV_					0	0	0			REV__ENSG00000142166|ENST00000270139|IFNAR1	REV__ENSG00000142166|ENST00000270139|IFNAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3123779296875	2	507.281995	1012.54944	-0.48079	-0.0002439	0.33343	0.00016914	-0.14736	-7.4754E-05	507.7845303887742	65.091	0.68636	64.856	64.568	65.255	-0.2345					23	16	2	0	0	0	0.027866	1	7378	7378		46.766	6.1938	1	120930	+		39375	24136	27068	27121	44852	44852					0.04366385376647486
LFAICLHLI	9	Unmodified	_LFAICLHLI_					0	0	0			REV__ENST00000194214.9_1_1:54387343-54387391:-|nuORF	REV__ENST00000194214.9_1_1:54387343-54387391:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.834228515625	2	521.809531	1041.60451	-0.67132	-0.0003503	1.6959	0.00088494	1.0246	0.00053464	521.810142195331	69.298	0.69199	69.298	68.977	69.669	0					30	17	3	0	0	0	0.024389	1	8357	8357		49.211	0	1	328210	+		39376	29293	27069	27122	44853	44853					0.08537055852934827
LFAILKKKS	9	Unmodified	_LFAILKKKS_					0	0	0		ENSG00000231192|ENST00000641874|OR5H1	ENSG00000231192|ENST00000641874|OR5H1	ENSG00000231192|ENST00000641874|OR5H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3135375976562	2	524.349877	1046.6852	-0.25924	-0.00013593	0.51704	0.00027111	0.2578	0.00013518	524.8529423268182	73.335	0.14746	73.345	73.255	73.402	0.0096512					5	3	2	0	0	0	0.024541	1	8877	8877		14.865	6.6336	1	101610			39377	10695	27070	27123	44854	44854					0.16372660167462527
LFAKGGLVQL	10	Unmodified	_LFAKGGLVQL_					0	0	0			REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3265991210938	2	523.32386	1044.63317	-0.84744	-0.00044349	-0.019421	-1.0163E-05	-0.86686	-0.00045365	523.3237443108741	67.129	1.6087	67.129	66.798	68.407	0					101	40	5	0	0	0	0.75995	1	7993	7993		63.306	2.3343	1	10719000	+		39378	21247	27071	27124	44855	44855					0.11263496753713298
LFAKGGLVQL	10	Unmodified	_LFAKGGLVQL_					0	0	0			REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3258056640625	2	523.32386	1044.63317	-0.016974	-8.8831E-06	-0.79411	-0.00041558	-0.81108	-0.00042446	523.3233662662817	67.266	1.3389	67.29	66.942	68.281	0.023911					93	33	5	0	0	0	0.55296	1	7927	7927		82.305	0.064519	1	12746000	+		39379	21247	27071	27124	44856	44856					0.11263496753713298
LFAKIKGIH	9	Unmodified	_LFAKIKGIH_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-2|ABCA6;ENST00000590311.5_1_17:67109638-67111556:-|nuORF;ENST00000589803.5_1_17:67102167-67114054:-|nuORF	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8156127929688	2	513.826569	1025.63859	-0.57314	-0.00029449	2.4404	0.0012539	1.8673	0.00095945	513.8276678093898	44.911	0.25156	44.955	44.894	45.145	0.04388					10	6	2	0	0	0	0.024325	1	4264	4264		40.573	8.6178	1	567050			39380	6395	27072	27125	44857	44857					0.12679220336190156
LFAKLFSH	8	Unmodified	_LFAKLFSH_					0	0	0		PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant;ENSG00000116793|ENST00000369604|PHTF1;nc|ENSG00000116793|Q9UMS5-2|PHTF1;ENST00000481652.1_1_1:114242829-114248598:-|nuORF	PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.26873779296875	2	481.776545	961.538538	0.048247	2.3244E-05	0.3637	0.00017522	0.41195	0.00019847	481.7762838829777	69.449	0.57934	69.227	68.894	69.474	-0.22245					25	13	3	0	0	0	0.027866	1	8011	8011		18.324	0	1	225750			39381	3579	27073	27126	44858	44858					0.05622983002388082
LFALFLHLPPL	11	Unmodified	_LFALFLHLPPL_					0	0	0		ENST00000477917.5_1_2:220146297-220148118:+|nuORF;ENST00000392086.8_2_2:220147893-220148193:+|nuORF;DNAJB2|p.F107Lfs*94|1|0.2|ENSG00000135924|chr2:219282028-219282028|T/-|frameshift_variant	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	640.8900146484375	2	640.891909	1279.76927	-0.53873	-0.00034527	-2.5588	-0.0016399	-3.0975	-0.0019852	640.8901198399866	80.121	1.3076	80.142	79.897	81.205	0.021439					86	31	4	0	0	0	0.98311	1	9887	9887		40.573	4.255	1	1008600			39382	15122	27074	27127	44859	44859					0.14057191264373614
LFALFLPIKW	10	Unmodified	_LFALFLPIKW_					0	0	0			REV__ENSG00000236032|ENST00000641380|OR5H14	REV__ENSG00000236032|ENST00000641380|OR5H14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	625.3673095703125	2	624.381177	1246.7478	0.13111	8.1864E-05	-0.27059	-0.00016895	-0.13948	-8.7087E-05	624.3808937137737	99.918	0.51379	99.918	99.704	100.22	0					17	13	2	0	0	0	0.03519	1	12767	12767		16.473	0	1	266050	+		39383	28930	27075	27128	44860	44860					0.1342980623562653
LFALFLPIKW	10	Unmodified	_LFALFLPIKW_					0	0	0			REV__ENSG00000236032|ENST00000641380|OR5H14	REV__ENSG00000236032|ENST00000641380|OR5H14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	625.3673706054688	2	624.381177	1246.7478	0.31777	0.00019841	0.13606	8.4953E-05	0.45383	0.00028336	624.3811902178078	99.926	0.5079	99.936	99.701	100.21	0.010117					19	13	2	0	0	0	0.03519	1	12741	12741		30.504	4.9296	1	367040	+		39384	28930	27075	27128	44861	44861					0.1342980623562653
LFALFLPIKW	10	Unmodified	_LFALFLPIKW_					0	0	0			REV__ENSG00000236032|ENST00000641380|OR5H14	REV__ENSG00000236032|ENST00000641380|OR5H14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.3749389648438	2	624.381177	1246.7478	-0.20761	-0.00012963	-2.0794	-0.0012983	-2.287	-0.0014279	624.3798605066477	100.67	0.51039	100.66	100.38	100.89	-0.0054398					22	12	2	0	0	0	1.1237	1	12792	12792		23.042	0.46283	1	490580	+		39385	28930	27075	27128	44862	44862					0.1342980623562653
LFALLKDLL	9	Unmodified	_LFALLKDLL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.296142578125	2	523.336436	1044.65832	-0.82993	-0.00043433	0.14743	7.7157E-05	-0.68249	-0.00035717	523.3365031225295	103.59	0.51691	103.59	103.38	103.9	0					21	12	3	0	0	0	0.024294	1	13270	13270		45.952	0	1	67858	+		39386	23233	27076	27129	44863	44863					0.13777551556268008
LFALVGISGAV	11	Unmodified	_LFALVGISGAV_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2966918945312	2	523.815867	1045.61718	-0.43789	-0.00022937	-0.1298	-6.7994E-05	-0.56769	-0.00029737	523.815904540293	100.29	0.355	100.29	100.18	100.53	0					12	7	2	0	0	0	0.024776	1	12853	12853		49.442	1.7842	1	153510	+		39387	23803	27077	27130	44864	44864					0.0961979051680828
LFALVWVL	8	Unmodified	_LFALVWVL_					0	0	0			REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	480.799489	959.584425	-0.46479	-0.00022347	-4.3224	-0.0020782	-4.7872	-0.0023017	480.79720937808395	31.998	0.74837	32.062	31.681	32.429	0.063408					41	18	3	0	0	0	0.027866	1	2132	2132		54.895	0	1	550660	+		39388	21191	27078	27131	44865	44865					0.1030162818460667
LFANPITIKL	10	Unmodified	_LFANPITIKL_					0	0	0			REV__ENST00000571745.1_1_17:7130492-7131139:-|nuORF	REV__ENST00000571745.1_1_17:7130492-7131139:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.772216796875	2	565.352617	1128.69068	-0.12631	-7.1409E-05	0.28514	0.00016121	0.15884	8.9799E-05	565.3527707842774	88.066	2.036	88.066	86.984	89.02	0					129	48	4	0	0	0	0.03519	1	11002	11002		24.203	0	1	1010100	+		39389	19791	27079	27132	44866	44866					0.13148338959263128
LFAPIHKV	8	Unmodified	_LFAPIHKV_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7743835449219	2	462.786913	923.559273	-0.45143	-0.00020892	-3.7558	-0.0017381	-4.2072	-0.001947	462.78502587634335	48.05	0.95792	47.897	47.371	48.329	-0.15301					42	28	2	0	0	0	0.027866	1	4756	4756		20.482	1.1219	1	228880			39390	2807	27080	27133	44867	44867					0.094435733820319
LFAPSGVLRA	10	Unmodified	_LFAPSGVLRA_					0	0	0		ENST00000481284.5_1_20:33515048-33515165:+|nuORF	ENST00000481284.5_1_20:33515048-33515165:+|nuORF	ENST00000481284.5_1_20:33515048-33515165:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2886352539062	2	515.805834	1029.59712	-0.53758	-0.00027729	-1.36	-0.0007015	-1.8976	-0.00097879	515.8048933494689	40.064	0.48519	39.914	39.668	40.153	-0.1497					17	12	2	0	0	0	0.03519	1	3426	3426		54.722	20.55	1	453650			39391	15225	27081	27134	44868	44868					0.08350039576839663
LFARRTAL	8	Unmodified	_LFARRTAL_					0	0	0			REV__nc|ENSG00000142655|O75381-2|PEX14	REV__nc|ENSG00000142655|O75381-2|PEX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7784729003906	2	474.292894	946.571235	-0.23388	-0.00011093	-0.40659	-0.00019284	-0.64047	-0.00030377	474.2938765184521	23.121	0.24648	23.198	23.026	23.272	0.076241					8	5	2	0	0	0	0.027866	1	820	820		50.025	5.4935	1	23776	+		39392	24174	27082	27135	44869	44869					0.09581190125220473
LFATGAMKQL	10	Unmodified	_LFATGAMKQL_					0	0	0			REV__ENST00000518319.5_1_8:94767110-94770759:+|nuORF	REV__ENST00000518319.5_1_8:94767110-94770759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7911376953125	2	540.299527	1078.5845	0.18688	0.00010097	-2.4409	-0.0013188	-2.254	-0.0012178	540.2974721747053	83.24	0.25686	83.15	83	83.257	-0.090454					7	5	2	0	0	0	0.03519	1	10350	10350		47.657	3.5405	1	61447	+		39393	34229	27083	27136	44870	44870					0.04835260122285945
LFATLFRLV	9	Unmodified	_LFATLFRLV_					0	0	0			REV__ENST00000526423.1_1_11:46700589-46702208:-|nuORF	REV__ENST00000526423.1_1_11:46700589-46702208:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7911376953125	2	540.334227	1078.6539	0.0888	4.7982E-05	-0.94422	-0.00051019	-0.85542	-0.00046221	540.3334745149915	83.13	1.3713	83.039	82.572	83.943	-0.090454					48	31	2	0	0	0	0.024457	1	10350	10350		45.952	10.751	1	90874	+		39394	34444	27084	27137	44871	44871					0.1177208713336313
LFAVMHPLTY	10	Unmodified	_LFAVMHPLTY_					0	0	0		ENSG00000163075|ENST00000413369|CFAP221;nc|ENSG00000163075|Q4G0U5-2|CFAP221	ENSG00000163075|ENST00000413369|CFAP221	ENSG00000163075|ENST00000413369|CFAP221	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.256591796875	2	596.315177	1190.6158	-0.34678	-0.00020679	3.008	0.0017937	2.6612	0.0015869	596.3191786590446	69.743	0.24797	69.52	69.432	69.68	-0.22245					9	5	3	0	0	0	0.03519	1	8107	8107		65.803	4.8312	1	36715			39395	7032	27085	27138	44872	44872					0.028118331563973697
LFAVSKKYF	9	Unmodified	_LFAVSKKYF_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4;nc|ENSG00000257594|Q8N4A0-2|GALNT4;ENST00000547474.1_3_12:89916592-89919989:-|nuORF;ENSG00000119514|ENST00000375011|GALNT12;nc|ENSG00000119514|Q8IXK2-2|GALNT12	ENSG00000257594|ENST00000529983|GALNT4;ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7806396484375	2	551.81841	1101.62227	-0.87095	-0.00048061	-3.3077	-0.0018252	-4.1786	-0.0023058	551.8163647228392	45.795	0.53448	45.593	45.358	45.892	-0.20226					27	14	3	0	0	0	0.023596	1	4321	4321		63.306	8.5416	1	378120			39396	3742;10921	27086	27139	44873	44873					0.07552094379434493
LFAVSKKYF	9	Unmodified	_LFAVSKKYF_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4;nc|ENSG00000257594|Q8N4A0-2|GALNT4;ENST00000547474.1_3_12:89916592-89919989:-|nuORF;ENSG00000119514|ENST00000375011|GALNT12;nc|ENSG00000119514|Q8IXK2-2|GALNT12	ENSG00000257594|ENST00000529983|GALNT4;ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.81841	1101.62227	-0.16041	-8.8515E-05	-4.1629	-0.0022971	-4.3233	-0.0023857	551.8160291316384	45.654	0.45123	45.558	45.326	45.777	-0.096649	-0.030665	-0.00085615	NaN	63.306	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359310			39397	3742;10921	27086	27139							0.07552094379434493
LFAYLFPNL	9	Unmodified	_LFAYLFPNL_					0	0	0			REV__nc|ENSG00000164270|Q13639-5|HTR4	REV__nc|ENSG00000164270|Q13639-5|HTR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3026123046875	2	549.305136	1096.59572	-0.59819	-0.00032859	-3.5038	-0.0019246	-4.102	-0.0022532	549.3031841848409	78.78	1.6602	78.798	78.441	80.101	0.018677					119	39	6	0	0	0	0.64155	1	9746	9746		50.025	2.1089	1	13961000	+		39398	36863	27087	27140	44874	44874					0.051284054880852636
LFCGFGLLF	9	Unmodified	_LFCGFGLLF_					0	0	0		ENST00000255977.6_2_7:140153727-140153859:-|nuORF	ENST00000255977.6_2_7:140153727-140153859:-|nuORF	ENST00000255977.6_2_7:140153727-140153859:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7671813964844	2	508.767332	1015.52011	0.17883	9.0985E-05	-2.9319	-0.0014917	-2.7531	-0.0014007	508.76574212527936	100.88	0.50851	100.87	100.72	101.23	-0.0054474					14	11	2	0	0	0	0.65391	1	12836	12836		49.211	10.189	1	85101			39399	11392	27088	27141	44875	44875					0.01297105036155699
LFCLPGFR	8	Unmodified	_LFCLPGFR_					0	0	0		ENST00000509802.1_1_4:79369241-79371543:+|nuORF	ENST00000509802.1_1_4:79369241-79371543:+|nuORF	ENST00000509802.1_1_4:79369241-79371543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7589111328125	2	476.757298	951.500044	0.43743	0.00020855	0.7679	0.0003661	1.2053	0.00057465	476.7577688912986	100.79	1.7036	100.66	100.4	102.11	-0.12569					69	44	2	0	0	0	1.0472	1	12529	12529		29.842	3.0454	1	198430			39400	15813	27089	27142	44876	44876					0.022353540962058105
LFCPHCYM	8	Unmodified	_LFCPHCYM_					0	0	0		ZNF521|p.F513L|1|0.29|ENSG00000198795|chr18:25226379-25226379|G/C|missense_variant	ZNF521|p.F513L|1|0.29|ENSG00000198795|chr18:25226379-25226379|G/C|missense_variant	ZNF521|p.F513L|1|0.29|ENSG00000198795|chr18:25226379-25226379|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.82373046875	2	507.205727	1012.3969	-0.60854	-0.00030865	2.6636	0.001351	2.0551	0.0010423	507.2070145029673	81.554	0.24819	81.554	81.423	81.671	0					7	5	2	0	0	0	0.027866	1	10152	10152		33.493	0	1	38570			39401	38197	27090	27143	44877	44877					-0.10880217678288773
LFDEFVREN	9	Unmodified	_LFDEFVREN_					0	0	0		ENSG00000163885|ENST00000352312|CFAP100;nc|ENSG00000163885|Q494V2-2|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.78515625	2	584.785296	1167.55604	-1.3926	-0.00081437	1.6761	0.00098018	0.28353	0.0001658	584.7863254287377	52.375	1.0876	52.375	51.702	52.789	0					84	28	4	0	0	0	0.2508	1	5619	5619		82.241	2.5279	1	2305900			39402	7166	27091	27144	44878	44878					-0.021037662532762624
LFDELRAKE	9	Unmodified	_LFDELRAKE_					0	0	0		ENSG00000173327|ENST00000309100|MAP3K11;nc|ENSG00000173327|Q16584-2|MAP3K11;ENST00000524856.1_1_11:65374036-65375591:-|nuORF	ENSG00000173327|ENST00000309100|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.3073120117188	2	560.803488	1119.59242	0.18265	0.00010243	4.191	0.0023503	4.3737	0.0024528	561.307599021762	69.398	0.68411	69.105	68.825	69.509	-0.29291					30	17	2	0	0	0	0.2101	1	8355	8355		87.696	7.9839	1	5009400			39403	8366	27092	27145	44879	44879					0.03741110643431966
LFDELRAKE	9	Unmodified	_LFDELRAKE_					0	0	0		ENSG00000173327|ENST00000309100|MAP3K11;nc|ENSG00000173327|Q16584-2|MAP3K11;ENST00000524856.1_1_11:65374036-65375591:-|nuORF	ENSG00000173327|ENST00000309100|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	560.803488	1119.59242	-0.36963	-0.00020729	4.676	0.0026223	4.3064	0.002415	561.3078922069602	69.071	0.63402	69.071	68.789	69.423	0	-0.061434	0.00022578	NaN	87.696	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4383500			39404	8366	27092	27145							0.03741110643431966
LFDGLHLEA	9	Unmodified	_LFDGLHLEA_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.764404296875	2	507.766374	1013.5182	-0.78646	-0.00039934	-3.4437	-0.0017486	-4.2301	-0.0021479	507.7642263962423	39.111	0.81017	39.012	38.737	39.547	-0.098751					58	22	5	0	0	0	0.55828	1	3329	3329		55.504	5.4797	1	2898900	+		39405	21403	27093	27146	44880	44880					0.01197767551900597
LFDGSGNLL	9	Unmodified	_LFDGSGNLL_					0	0	0		ENST00000321870.2_1_8:65492938-65493277:+|nuORF	ENST00000321870.2_1_8:65492938-65493277:+|nuORF	ENST00000321870.2_1_8:65492938-65493277:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.24456787109375	2	468.245275	934.475997	-0.18849	-8.8262E-05	-1.0016	-0.00046899	-1.1901	-0.00055725	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	0.88411	1	12873	12873		33.516	1.5607	1	4433200			39406	12212	27094	27147	44881	44881					0.006137921435311
LFDGVYTH	8	Unmodified	_LFDGVYTH_					0	0	0		FGFR3|p.R669G|1|0.41|ENSG00000068078|chr4:1806302-1806302|C/G|missense_variant	FGFR3|p.R669G|1|0.41|ENSG00000068078|chr4:1806302-1806302|C/G|missense_variant	FGFR3|p.R669G|1|0.41|ENSG00000068078|chr4:1806302-1806302|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2605895996094	2	476.232168	950.449782	-0.51567	-0.00024558	-3.8812	-0.0018483	-4.3968	-0.0020939	476.2304444356137	28.306	0.36092	28.061	27.801	28.162	-0.24524					9	8	2	0	0	0	0.027866	1	1642	1642		44.531	14.027	1	433560			39407	17652	27095	27148	44882	44882					-0.027424770279594668
LFDIQVKW	8	Unmodified	_LFDIQVKW_					0	0	0		PYGM|p.R570W|1|0.14|ENSG00000068976|chr11:64751984-64751984|G/A|missense_variant	PYGM|p.R570W|1|0.14|ENSG00000068976|chr11:64751984-64751984|G/A|missense_variant	PYGM|p.R570W|1|0.14|ENSG00000068976|chr11:64751984-64751984|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.78955078125	2	524.794935	1047.57532	-0.014308	-7.5089E-06	0.17564	9.2173E-05	0.16133	8.4664E-05	524.7947112142109	76.359	0.57494	76.107	75.867	76.442	-0.25162					25	13	2	0	0	0	0.027866	1	9067	9067		46.766	13.251	1	316000			39408	19015	27096	27149	44883	44883					0.05343234828274035
LFDKLMKVS	9	Unmodified	_LFDKLMKVS_					0	0	0			REV__nc|ENSG00000107614|O14717-3|TRDMT1	REV__nc|ENSG00000107614|O14717-3|TRDMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8103637695312	2	540.809728	1079.6049	-0.37787	-0.00020435	1.0605	0.00057351	0.6826	0.00036916	540.8101919397197	106.94	0.80251	106.82	106.55	107.35	-0.1238					92	26	4	0	0	0	0.27161	1	13360	13360		79.451	6.8311	1	5187000	+		39409	21675	27097	27150	44884	44884					0.06828430782093164
LFDKRTVLE	9	Unmodified	_LFDKRTVLE_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2661743164062	2	560.821681	1119.62881	1.1149	0.00062524	-0.4833	-0.00027104	0.63157	0.0003542	560.8213893537946	59.75	0.49915	59.553	59.339	59.838	-0.19742					30	12	3	0	0	0	0.024283	1	6608	6608		65.465	10.689	1	1105000			39410	1051	27098	27151	44885	44885					0.07377987540144204
LFDLIVAFN	9	Unmodified	_LFDLIVAFN_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.802734375	2	526.294768	1050.57498	0.41774	0.00021985	-0.067852	-3.571E-05	0.34989	0.00018414	526.7966705927879	101.56	0.47456	101.56	101.15	101.62	-0.0054474					15	10	2	0	0	0	0.024262	1	12931	12931		68.485	7.5128	1	270440	+		39411	25558	27099	27152	44886	44886					0.051718151084287456
LFDLIVAFN	9	Unmodified	_LFDLIVAFN_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.294768	1050.57498	0.20873	0.00010985	-0.53044	-0.00027917	-0.3217	-0.00016931	526.2941911709587	101.56	0.45713	101.38	101.15	101.6	-0.17178	-0.093881	-0.00057514	NaN	68.485	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61526	+		39412	25558	27099	27152							0.051718151084287456
LFDLQLSDT	9	Unmodified	_LFDLQLSDT_					0	0	0			REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2691040039062	2	526.268947	1050.52334	-0.70976	-0.00037352	1.0031	0.0005279	0.29334	0.00015438	526.2691859856716	66.431	0.49377	66.207	65.945	66.439	-0.22374					33	12	5	0	0	0	0.77768	1	7626	7626		40.778	1.972	1	1315300	+		39413	30273	27100	27153	44887	44887					0.00010026623840531101
LFDLQLSDT	9	Unmodified	_LFDLQLSDT_					0	0	0			REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.268947	1050.52334	-0.15476	-8.1443E-05	-1.0214	-0.00053752	-1.1761	-0.00061896	526.2681107309561	66.008	0.58044	66.008	65.643	66.224	0	-0.11344	-0.0014848	NaN	40.778	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934130	+		39414	30273	27100	27153							0.00010026623840531101
LFDLQLSDT	9	Unmodified	_LFDLQLSDT_					0	0	0			REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.268947	1050.52334	-0.39986	-0.00021043	-0.53251	-0.00028025	-0.93238	-0.00049068	526.268309765755	66.337	0.57885	66.056	65.672	66.251	-0.28148	-0.065669	-0.0009702	NaN	40.778	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	853880	+		39415	30273	27100	27153							0.00010026623840531101
LFDLQLSDT	9	Unmodified	_LFDLQLSDT_					0	0	0			REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	REV__ENST00000316024.9_2_17:7590007-7590208:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.268947	1050.52334	0.025143	1.3232E-05	-1.1181	-0.00058844	-1.093	-0.00057521	526.2682370365433	66.042	0.57319	66.072	65.624	66.197	0.030106	-0.049982	-0.0015866	NaN	40.778	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074100	+		39416	30273	27100	27153							0.00010026623840531101
LFDMVIKRG	9	Unmodified	_LFDMVIKRG_					0	0	0			REV__ENST00000478787.1_1_10:102296230-102304880:+|nuORF	REV__ENST00000478787.1_1_10:102296230-102304880:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.2968139648438	2	539.807519	1077.60049	-1.1917	-0.00064328	0.83711	0.00045188	-0.35457	-0.0001914	539.8083254333692	60.816	0.41095	60.602	60.384	60.795	-0.2134					12	10	2	0	0	0	0.024381	1	6992	6992		37.159	12.956	1	190020	+		39417	25974	27101	27154	44888	44888					0.064789663592137
LFDQLVNS	8	Unmodified	_LFDQLVNS_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2440185546875	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	0.99042	2	12854	12854;12975		38.806	1.647	1	4477100			39418	3767	27102	27155	44889;44890	44889					0.006137921435311
LFEADFILL	9	Unmodified	_LFEADFILL_					0	0	0		MINK1-ALOX12|1|fusion;ENSG00000108839|ENST00000251535|ALOX12	MINK1-ALOX12|1|fusion	MINK1-ALOX12|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8035888671875	2	540.802426	1079.5903	-0.81003	-0.00043807	0.74777	0.0004044	-0.062262	-3.3671E-05	540.8026583367954	96.315	1.0275	96.315	96.075	97.102	0					51	23	3	0	0	0	0.18276	1	12288	12288		92.191	3.5478	1	646720			39419	2939	27103	27156	44891	44891					0.053686819056110835
LFECRMKI	8	Unmodified	_LFECRMKI_					0	0	0			REV__nc|ENSG00000268916|Q9Y5P2-2|CSAG2	REV__nc|ENSG00000268916|Q9Y5P2-2|CSAG2	MSMS	OPSCC_39_ClassI_Rep-2	2	520.27734375	2	520.274998	1038.53544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.3	1	107.29	106.79	107.79	-0.003479								0	0	0	0.85517	1	13734	13734		30.504	0.18592	1		+		39420	19480	27104	27157	44892	44892					0.01771648561702932
LFEDAGYLK	9	Unmodified	_LFEDAGYLK_					0	0	0		ENSG00000090581|ENST00000204679|GNPTG;ENST00000527076.1_1_16:1412572-1413089:+|nuORF;ENST00000527168.5_1_16:1412406-1413089:+|nuORF	ENSG00000090581|ENST00000204679|GNPTG	ENSG00000090581|ENST00000204679|GNPTG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2734985351562	2	528.274032	1054.53351	-0.65496	-0.000346	-0.44814	-0.00023674	-1.1031	-0.00058274	528.2738695912601	92.008	2.8556	91.999	91.326	94.181	-0.0082932					232	68	6	0	0	0	0.25032	1	11689	11689		82.305	0	1	52333000			39421	1937	27105	27158	44893	44893					0.008426343491009902
LFEEAHPVE	9	Unmodified	_LFEEAHPVE_					0	0	0			REV__nc|ENSG00000169679|O43683-2|BUB1	REV__nc|ENSG00000169679|O43683-2|BUB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.76416015625	2	535.761289	1069.50803	-0.80214	-0.00042976	3.8329	0.0020535	3.0308	0.0016238	535.7630274507628	49.146	0.72282	49.045	48.655	49.377	-0.1008					42	18	3	0	0	0	0.67308	1	4928	4928		47.916	0.25827	1	1174100	+		39422	26390	27106	27159	44894	44894					-0.023948401733150604
LFEEIASIL	9	Unmodified	_LFEEIASIL_					0	0	0		ENST00000573295.5_1_17:79211175-79212833:-|nuORF;ENST00000576090.5_1_17:79211175-79211445:-|nuORF	ENST00000573295.5_1_17:79211175-79212833:-|nuORF	ENST00000573295.5_1_17:79211175-79212833:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7942504882812	2	517.792058	1033.56956	0.67035	0.0003471	2.6716	0.0013833	3.3419	0.0017304	517.7931612830049	100.61	1.2417	100.49	100.17	101.42	-0.12503					57	32	2	0	0	0	0.55828	1	12501	12501		55.504	2.1528	1	360170			39423	17070	27107	27160	44895	44895					0.054120915259545654
LFEETVNA	8	Unmodified	_LFEETVNA_					0	0	0			REV__ENST00000296525.7_1_4:177136745-177136853:-|nuORF	REV__ENST00000296525.7_1_4:177136745-177136853:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.7320861816406	2	461.729458	921.444362	0.67275	0.00031063	3.985	0.00184	4.6577	0.0021506	461.7313354089835	25.225	0.62917	25.054	24.777	25.406	-0.17151					45	14	4	0	0	0	0.81662	1	1159	1159		57.811	2.3071	1	1498500	+		39424	29997	27108	27161	44896	44896					-0.01950200610428965
LFEGSETQL	9	Unmodified	_LFEGSETQL_					0	0	0			REV__MYH2|p.S1294L|1|0.39|ENSG00000125414|chr17:10527047-10527047|G/A|missense_variant	REV__MYH2|p.S1294L|1|0.39|ENSG00000125414|chr17:10527047-10527047|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2537231445312	2	512.253297	1022.49204	0.0020289	1.0393E-06	0.28449	0.00014573	0.28652	0.00014677	512.2535245500372	53.952	2.95	54.05	53.631	56.581	0.098015					227	82	5	0	0	0	0.50848	1	5900	5900		58.782	7.4465	1	29194000	+		39425	36408	27109	27162	44897	44897					-0.018305464102354563
LFEILIEQI	9	Unmodified	_LFEILIEQI_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2987670898438	2	559.328808	1116.64306	-0.69062	-0.00038628	-2.3764	-0.0013292	-3.067	-0.0017155	559.3273255306684	27.533	0.66083	27.614	27.463	28.124	0.081291					24	16	2	0	0	0	0.024506	1	1544	1544		23.042	0	1	129350			39426	10155	27110	27163	44898	44898					0.08940639968432151
LFEKIQMMP	9	Unmodified	_LFEKIQMMP_					0	0	0			REV__ENST00000325599.12_1_3:72891496-72893545:-|nuORF	REV__ENST00000325599.12_1_3:72891496-72893545:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.278564453125	2	568.795763	1135.57697	0.81092	0.00046125	-1.3558	-0.00077114	-0.54483	-0.00030989	568.7956098211332	83.199	0.76949	83.108	82.615	83.385	-0.090454					25	17	2	0	0	0	0.024261	1	10351	10351		54.776	0	1	100850	+		39427	30391	27111	27164	44899	44899					0.014607845303544309
LFELEKFVQ	9	Unmodified	_LFELEKFVQ_					0	0	0			REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	577.274658203125	2	576.818607	1151.62266	-0.4304	-0.00024826	-4.2028	-0.0024242	-4.6332	-0.0026725	576.8163378362365	79.286	0.3648	79.305	79.11	79.475	0.018677					14	8	3	0	0	0	0.024209	1	9770	9770		66.429	0	1	119270	+		39428	26230	27112	27165	44900	44900					0.05291469308622254
LFELLTRIA	9	Unmodified	_LFELLTRIA_					0	0	0			REV__ENSG00000111361|ENST00000424014|EIF2B1	REV__ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3272094726562	2	538.329142	1074.64373	-0.12202	-6.5684E-05	-3.9102	-0.002105	-4.0322	-0.0021706	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	0.77768	1	12701	12701		40.778	3.6191	1	22543000	+		39429	21913	27113	27166	44901	44901					0.10939479408125408
LFENRQLL	8	Unmodified	_LFENRQLL_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.7951049804688	2	516.795466	1031.57638	-0.23449	-0.00012118	0.1439	7.4368E-05	-0.090588	-4.6815E-05	516.7953025991258	63.72	0.6961	63.493	63.212	63.908	-0.22773					48	17	4	0	0	0	0.6536	1	7217	7217		71.296	5.3982	1	2659900	+		39430	25920	27114	27167	44902	44902					0.06185449197187154
LFERPGDEE	9	Unmodified	_LFERPGDEE_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2578735351562	2	546.253828	1090.4931	0.80108	0.00043759	1.6324	0.00089173	2.4335	0.0013293	546.2546099583782	59.679	0.51891	59.482	59.132	59.651	-0.19742					32	12	4	0	0	0	0.2508	1	6607	6607		82.241	7.9855	1	1674600	+		39431	28639	27115	27168	44903	44903					-0.048523320413323745
LFESAELLL	9	Unmodified	_LFESAELLL_					0	0	0			REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.79345703125	2	517.792058	1033.56956	0.35641	0.00018455	2.8039	0.0014518	3.1603	0.0016364	517.7932431999924	100.65	1.3018	100.51	100.19	101.5	-0.13364					55	31	2	0	0	0	0.67308	1	12494	12494		47.916	1.9636	1	398830	+		39432	23678	27116	27169	44904	44904					0.054120915259545654
LFESAELLL	9	Unmodified	_LFESAELLL_					0	0	0			REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	MSMS	OPSCC_40_ClassI_Rep-1	4	517.7930297851562	2	517.792058	1033.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.784	1	99.649	99.149	100.15	-0.13526								0	0	0	0.33713	1	12367	12367		65.803	7.9919	1		+		39433	23678	27116	27169	44905	44905					0.054120915259545654
LFESAELLL	9	Unmodified	_LFESAELLL_					0	0	0			REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7931518554688	2	517.792058	1033.56956	0.97355	0.0005041	2.1708	0.001124	3.1443	0.0016281	517.7930151292054	99.886	2.0152	99.761	97.848	99.863	-0.12504					66	51	2	0	0	0	0.29104	1	12389	12389		76.847	5.5509	1	554780	+		39434	23678	27116	27169	44906	44906					0.054120915259545654
LFESGAIFQ	9	Unmodified	_LFESGAIFQ_					0	0	0		ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3233642578125	2	506.260925	1010.5073	-0.65198	-0.00033007	-4.1489	-0.0021004	-4.8009	-0.0024305	506.25856593814046	38.825	0.68368	38.825	38.639	39.323	0					43	18	3	0	0	0	0.024397	1	3314	3314		39.253	10.103	1	429890			39435	2202	27117	27170	44907	44907					0.0024636517762246513
LFESNGSLIY	10	Unmodified	_LFESNGSLIY_					0	0	0		ENSG00000147316|ENST00000344683|MCPH1;nc|ENSG00000147316|Q8NEM0-3|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.310302734375	2	571.790047	1141.56554	0.22653	0.00012953	0.562	0.00032135	0.78853	0.00045087	571.7896920741241	74.646	0.41748	74.37	74.22	74.638	-0.27573					20	9	3	0	0	0	0.03519	1	8815	8815		58.782	27.252	1	195330			39436	5955	27118	27171	44908	44908					0.00042002032250820776
LFETIWHL	8	Unmodified	_LFETIWHL_					0	0	0			REV__nc|ENSG00000105185|O14737-2|PDCD5	REV__nc|ENSG00000105185|O14737-2|PDCD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8077392578125	2	529.78711	1057.55967	-0.92173	-0.00048832	-1.4355	-0.00076052	-2.3572	-0.0012488	529.7865051462271	73.401	0.26173	73.401	73.254	73.516	0					7	4	2	0	0	0	0.027866	1	8948	8948		21.702	6.0661	1	270360	+		39437	36537	27119	27172	44909	44909					0.03318948311220993
LFFETESH	8	Unmodified	_LFFETESH_					0	0	0		ENST00000602663.1_1_15:30781425-30781716:+|nuORF	ENST00000602663.1_1_15:30781425-30781716:+|nuORF	ENST00000602663.1_1_15:30781425-30781716:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7669982910156	2	505.234907	1008.45526	-0.036186	-1.8283E-05	-3.0359	-0.0015339	-3.0721	-0.0015521	505.2334339924175	63.62	0.14963	63.392	63.291	63.44	-0.22773					5	3	2	0	0	0	0.027866	1	7183	7183		28.254	16.047	1	115460			39438	17532	27120	27173	44910	44910					-0.04862798236138133
LFFFLGSLP	9	Unmodified	_LFFFLGSLP_					0	0	0			REV__ENST00000395290.6_1_11:47490324-47490525:-|nuORF	REV__ENST00000395290.6_1_11:47490324-47490525:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7804565429688	2	520.794404	1039.57425	0.38383	0.0001999	-1.1712	-0.00060996	-0.78738	-0.00041006	520.7942543891045	85.044	1.1211	85.044	84.546	85.667	0					32	26	2	0	0	0	0.024386	1	10743	10743		33.516	0.76505	1	88978	+		39439	31693	27121	27174	44911	44911					0.0560502045937028
LFFFLTTP	8	Unmodified	_LFFFLTTP_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.77886962890625	2	493.273304	984.532055	-0.24317	-0.00011995	-1.0499	-0.00051786	-1.293	-0.00063781	493.2725241986351	81.118	1.1258	81.118	80.585	81.711	0					36	27	2	0	0	0	0.027866	1	10156	10156		35.201	3.2459	1	320090			39440	7430	27122	27175	44912	44912					0.039170450509686816
LFFFPKQV	8	Unmodified	_LFFFPKQV_					0	0	0		ENST00000415149.6_1_3:107526041-107526149:+|nuORF	ENST00000415149.6_1_3:107526041-107526149:+|nuORF	ENST00000415149.6_1_3:107526041-107526149:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2939453125	2	513.294571	1024.57459	-0.52259	-0.00026824	-3.6612	-0.0018793	-4.1838	-0.0021475	513.292574894627	65.242	0.64826	64.991	64.705	65.353	-0.25112					41	15	4	0	0	0	0.027866	1	7482	7482		39.021	5.5285	1	1327900			39441	13873	27123	27176	44913	44913					0.06328440179208883
LFFFQRVEP	9	Unmodified	_LFFFQRVEP_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	591.819091796875	2	591.818941	1181.62333	-0.61669	-0.00036497	0.39133	0.0002316	-0.22536	-0.00013337	591.8191062377672	80.538	0.90611	80.392	80.117	81.023	-0.146					41	21	3	0	0	0	0.87448	1	9658	9658		34.173	0.25091	1	917670	+		39442	20687	27124	27177	44914	44914					0.03978308748332893
LFFFVVSL	8	Unmodified	_LFFFVVSL_					0	0	0		chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.31549072265625	2	486.283672	970.552791	0.011266	5.4783E-06	-3.3915	-0.0016492	-3.3802	-0.0016437	486.28178636387617	69.821	0.74969	69.821	69.308	70.058	0					46	18	4	0	0	0	0.027866	1	8426	8426		37.028	12.524	1	1003500			39443	379	27125	27178	44915	44915					0.06633635430659979
LFFFVVSL	8	Unmodified	_LFFFVVSL_					0	0	0		chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.3155517578125	2	486.283672	970.552791	-0.73552	-0.00035767	-3.0167	-0.001467	-3.7523	-0.0018247	486.28209515754673	69.865	0.6412	69.877	69.463	70.104	0.012421					29	15	2	0	0	0	0.027866	1	8366	8366		57.453	0	1	882760			39444	379	27125	27178	44916	44916					0.06633635430659979
LFFGIAMV	8	Unmodified	_LFFGIAMV_					0	0	0		ENSG00000221989|ENST00000408979|OR2A2	ENSG00000221989|ENST00000408979|OR2A2	ENSG00000221989|ENST00000408979|OR2A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2705078125	2	449.248775	896.482997	0.4807	0.00021595	-0.85561	-0.00038438	-0.37491	-0.00016843	449.24749391422836	21.326	0.43271	21.149	20.87	21.303	-0.17721					17	8	3	0	0	0	0.027866	1	644	644		33.493	0	1	33849			39445	10633	27126	27179	44917	44917					0.030614334903930285
LFFGLRPTD	9	Unmodified	_LFFGLRPTD_					0	0	0			REV__ENST00000375114.7_1_20:32667742-32668009:+|nuORF	REV__ENST00000375114.7_1_20:32667742-32668009:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2947387695312	2	533.290017	1064.56548	-0.39652	-0.00021146	3.5918	0.0019155	3.1952	0.001704	533.2917024777944	104.12	0.57401	104.13	103.7	104.28	0.0031357					20	14	2	0	0	0	0.024319	1	13337	13337		56.721	15.943	1	56571	+		39446	31319	27127	27180	44918	44918					0.03578046822894976
LFFGSAAFMY	10	Unmodified	_LFFGSAAFMY_					0	0	0		nc|ENSG00000284609|Q8NGG8|OR8B3;nc|ENSG00000284680|Q96RD0|OR8B2	nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284609|Q8NGG8|OR8B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.294921875	2	577.272978	1152.5314	-0.19773	-0.00011415	0.844	0.00048722	0.64627	0.00037307	577.2734113927273	81.494	1.6644	81.3	81.131	82.795	-0.19334					60	38	3	0	0	0	0.03519	1	10012	10012		55.504	0	1	631520			39447	18808	27128	27181	44919	44919					-0.03876117660365708
LFFHSKETA	9	Unmodified	_LFFHSKETA_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2339477539062	2	540.279649	1078.54475	-0.97687	-0.00052778	0.80986	0.00043755	-0.167	-9.0229E-05	540.2800492729399	26.727	0.555	26.704	26.569	27.124	-0.023088					21	13	2	0	0	0	0.023837	1	1388	1388		54.776	0	1	78993	+		39448	20079	27129	27182	44920	44920					0.00861456443226416
LFFILKAR	8	Unmodified	_LFFILKAR_					0	0	0			REV__ENST00000338785.7_1_21:38884938-38884980:+|nuORF	REV__ENST00000338785.7_1_21:38884938-38884980:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.3270568847656	2	504.323663	1006.63277	4.7418	0.0023914	1.9331	0.00097491	6.6749	0.0033663	504.3246561985497	17.917	1.1535	17.977	17.786	18.939	0.06036					67	24	5	0	0	0	0.95417	3	203	179;191;203		44.531	16.277	1	2544500	+		39449	30595	27130	27183	44921;44922;44923	44923					0.12972121824509486
LFFLIFNLTVL	11	Unmodified	_LFFLIFNLTVL_					0	0	0		ENST00000430246.6_1_14:21730999-21731299:-|nuORF	ENST00000430246.6_1_14:21730999-21731299:-|nuORF	ENST00000430246.6_1_14:21730999-21731299:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.2740478515625	3	447.272325	1338.79515	0.11818	5.2859E-05	1.2623	0.00056458	1.3805	0.00061744	447.27278940417534	106.28	1.1364	106.16	105.64	106.77	-0.1238					111	43	5	0	0	0	1.0429	1	13219	13219		27.047	1.9213	1	2232400			39450	14163	27131	27184	44924	44924					0.139300407159908
LFFLMYLIN	9	Unmodified	_LFFLMYLIN_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	587.3263549804688	2	587.322471	1172.63039	-1.5006	-0.00088136	-2.4473	-0.0014374	-3.948	-0.0023187	587.3205177771338	78.795	1.0423	78.795	78.447	79.489	0					43	24	3	0	0	0	0.024325	1	9780	9780		50.025	4.0726	1	1087300			39451	10221;10159	27132	27185	44925	44925					0.05097905304546657
LFFLMYLIN	9	Unmodified	_LFFLMYLIN_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	587.322471	1172.63039	-1.2637	-0.00074221	2.0309	0.0011928	0.76715	0.00045056	587.3241686043772	79.023	1.2101	78.851	78.4	79.61	-0.17226	0.174	0.0090414	NaN	50.025	54	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	855860			39452	10221;10159	27132	27185							0.05097905304546657
LFFLMYLIN	9	Unmodified	_LFFLMYLIN_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	587.322471	1172.63039	-0.54294	-0.00031888	-5.7241	-0.0033619	-6.267	-0.0036808	587.3190006109277	78.76	0.64156	78.529	78.26	78.902	-0.23141	-0.14781	-6.7969E-05	NaN	50.025	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457230			39453	10221;10159	27132	27185							0.05097905304546657
LFFLMYLIN	9	Unmodified	_LFFLMYLIN_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	587.322471	1172.63039	-0.50321	-0.00029555	-5.7631	-0.0033848	-6.2663	-0.0036803	587.3189759123125	78.648	0.64491	78.492	78.212	78.856	-0.15591	-0.1847	-0.00011376	NaN	50.025	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514430			39454	10221;10159	27132	27185							0.05097905304546657
LFFLQNRFK	9	Unmodified	_LFFLQNRFK_					0	0	0		ENSG00000151014|ENST00000280614|NOCT	ENSG00000151014|ENST00000280614|NOCT	ENSG00000151014|ENST00000280614|NOCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	404.901114	1211.68151	-1.0144	-0.00041073	1.7965	0.00072742	0.78213	0.00031669	404.90217173213205	26.527	0.51035	26.363	26.069	26.579	-0.16331					23	13	2	0	0	0	0.024511	1	1353	1353		19.104	0	1	193640			39455	6169	27133	27186	44926	44926					0.0841399039359203
LFFNSCTCAL	10	Unmodified	_LFFNSCTCAL_					0	0	0		ENST00000009041.11_1_7:38269941-38270055:+|nuORF	ENST00000009041.11_1_7:38269941-38270055:+|nuORF	ENST00000009041.11_1_7:38269941-38270055:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8088989257812	2	559.754095	1117.49364	-0.5699	-0.00031901	-0.0013774	-7.7098E-07	-0.57128	-0.00031978	559.7541436311134	83.101	0.55759	83.101	82.835	83.393	0					19	12	3	0	0	0	0.03519	1	10348	10348		84.916	8.0689	1	56382			39456	11099	27134	27187	44927	44927					-0.06040951917498205
LFFSGNALLP	10	Unmodified	_LFFSGNALLP_					0	0	0		ENSG00000073169|ENST00000380903|SELENOO;ENST00000380903.6_1_22:50639465-50655786:+|nuORF	ENSG00000073169|ENST00000380903|SELENOO	ENSG00000073169|ENST00000380903|SELENOO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7997436523438	2	539.800217	1077.58588	-0.089862	-4.8507E-05	0.52088	0.00028117	0.43102	0.00023267	539.8002430944117	68.28	0.93215	68.025	67.661	68.593	-0.25516					59	22	4	0	0	0	0.42446	1	7900	7900		96.19	7.5476	1	3353000			39457	1503	27135	27188	44928	44928					0.05019217482708882
LFFSGNALLP	10	Unmodified	_LFFSGNALLP_					0	0	0		ENSG00000073169|ENST00000380903|SELENOO;ENST00000380903.6_1_22:50639465-50655786:+|nuORF	ENSG00000073169|ENST00000380903|SELENOO	ENSG00000073169|ENST00000380903|SELENOO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7999267578125	2	539.800217	1077.58588	0.10618	5.7316E-05	0.0062626	3.3806E-06	0.11244	6.0697E-05	539.8001652370033	68.333	0.92837	68.099	67.387	68.316	-0.23376					53	22	4	0	0	0	0.34101	1	7888	7888		104.75	0	1	3512500			39458	1503	27135	27188	44929	44929					0.05019217482708882
LFFSGPVL	8	Unmodified	_LFFSGPVL_					0	0	0		ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	ENST00000465893.1_1_6:41037763-41039373:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.7763977050781	2	440.252372	878.49019	-0.48142	-0.00021195	-0.36929	-0.00016258	-0.85072	-0.00037453	440.2521071304379	22.083	1.5163	21.894	21.08	22.596	-0.18901					49	31	2	0	0	0	0.027866	1	745	745		21.702	0	1	26103			39459	14797	27136	27189	44930	44930					0.046084893624765755
LFFTVLQD	8	Unmodified	_LFFTVLQD_					0	0	0		ENSG00000175899|ENST00000318602|A2M;ENST00000495709.1_1_12:9220421-9221456:-|nuORF;ENST00000495442.1_1_12:9220650-9221456:-|nuORF	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7815246582031	2	491.765843	981.517133	-0.60275	-0.00029641	-3.9815	-0.001958	-4.5843	-0.0022544	491.7638544110845	62.905	0.36657	62.905	62.651	63.018	0					13	8	2	0	0	0	0.027866	1	7307	7307		31.955	7.7521	1	905200			39460	8596	27137	27190	44931	44931					0.02563553182983469
LFFVFYGGI	9	Unmodified	_LFFVFYGGI_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5;OR4F4|p.V198Cfs*10|1|0.06|ENSG00000177693|chr15:101922468-101922468|C/-|frameshift_variant	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.3076171875	2	531.786579	1061.5586	0.21114	0.00011228	-3.4196	-0.0018185	-3.2085	-0.0017062	531.7846543804714	70.815	0.69318	70.815	70.569	71.263	0					24	16	2	0	0	0	0.024289	1	8537	8537		21.702	0	1	298280			39461	8661	27138	27191	44932	44932					0.030287339423239246
LFFWQNSP	8	Unmodified	_LFFWQNSP_					0	0	0		ENSG00000144182|ENST00000651691|LIPT1	ENSG00000144182|ENST00000651691|LIPT1	ENSG00000144182|ENST00000651691|LIPT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2326049804688	2	519.75581	1037.49707	0.074057	3.8492E-05	-0.75433	-0.00039207	-0.68028	-0.00035358	519.7552219505302	45.812	0.45569	45.551	45.284	45.739	-0.26118					15	12	2	0	0	0	0.027866	1	4361	4361		56.721	3.3696	1	146680			39462	5720	27139	27192	44933	44933					-0.02018197756956397
LFFYMPNN	8	Unmodified	_LFFYMPNN_					0	0	0			REV__ENSG00000174937|ENST00000641993|OR5M3	REV__ENSG00000174937|ENST00000641993|OR5M3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3259887695312	2	523.244221	1044.47389	-1.0824	-0.00056636	-2.2339	-0.0011689	-3.3163	-0.0017353	523.2430799709639	80.966	0.84099	80.966	80.707	81.548	0					38	20	3	0	0	0	0.027866	1	10080	10080		29.842	1.9593	1	241670	+		39463	26905	27140	27193	44934	44934					-0.04656959865951649
LFFYMPSN	8	Unmodified	_LFFYMPSN_					0	0	0			REV__ENSG00000172640|ENST00000310248|OR10AD1	REV__ENSG00000172640|ENST00000310248|OR10AD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7687072753906	2	509.738771	1017.46299	-0.057092	-2.9102E-05	0.94384	0.00048111	0.88674	0.00045201	509.7392179425258	41.551	0.84449	41.551	40.981	41.825	0					44	23	3	0	0	0	0.027866	1	3791	3791		52.299	0	1	402760	+		39464	26693	27141	27194	44935	44935					-0.045043622402204164
LFGAKPMSL	9	Unmodified	_LFGAKPMSL_					0	0	0		CON__P28800	CON__P28800	CON__P28800	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2771911621094	2	482.270238	962.525924	0.48529	0.00023404	2.5566	0.001233	3.0419	0.001467	482.2714772288898	51.36	0.41911	51.36	51.248	51.667	0					19	11	2	0	0	0	0.024263	1	5427	5427		51.335	17.82	1	544920		+	39465	528	27142	27195	44936	44936					0.043162035478189864
LFGAKPMSL	9	Unmodified	_LFGAKPMSL_					0	0	0		CON__P28800	CON__P28800	CON__P28800	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.270238	962.525924	-0.55849	-0.00026935	3.3388	0.0016102	2.7803	0.0013408	482.2717334632888	51.57	0.30963	51.423	51.3	51.609	-0.14735	0.038712	-4.4162E-05	NaN	26.693	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539260		+	39466	528	27142	27195							0.043162035478189864
LFGCLEVGGVE	11	Unmodified	_LFGCLEVGGVE_					0	0	0		ENST00000580376.5_1_17:61901002-61901722:-|nuORF	ENST00000580376.5_1_17:61901002-61901722:-|nuORF	ENST00000580376.5_1_17:61901002-61901722:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.7780151367188	2	561.778625	1121.5427	-0.94987	-0.00053362	0.87518	0.00049166	-0.074695	-4.1962E-05	561.7789953308469	83.808	0.69426	83.808	83.477	84.171	0					43	15	4	0	0	0	0.6558	2	10482	10482;10493		66.429	2.222	1	684580			39467	17150	27143	27196	44937;44938	44937					-0.013213403568897775
LFGCLEVGGVE	11	Unmodified	_LFGCLEVGGVE_					0	0	0		ENST00000580376.5_1_17:61901002-61901722:-|nuORF	ENST00000580376.5_1_17:61901002-61901722:-|nuORF	ENST00000580376.5_1_17:61901002-61901722:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.7782592773438	2	561.778625	1121.5427	-0.97345	-0.00054686	0.98056	0.00055086	0.0071131	3.996E-06	561.779096674404	83.751	1.0318	83.778	83.384	84.416	0.026558					46	23	3	0	0	0	0.56861	1	10411	10411		71.877	15.444	1	770320			39468	17150	27143	27196	44939	44939					-0.013213403568897775
LFGDVRGG	8	Unmodified	_LFGDVRGG_					0	0	0			REV__ENSG00000126467|ENST00000246801|TSKS	REV__ENSG00000126467|ENST00000246801|TSKS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.7189636230469	2	410.719227	819.423902	0.76249	0.00031317	-1.8416	-0.00075639	-1.0791	-0.00044322	410.71839091260426	95.381	1.9576	95.381	94.702	96.659	0					107	45	4	0	0	0	1.0572	1	12107	12107		28.254	1.4582	1	3807300	+		39469	22898	27144	27197	44940	44940					0.00696673520440072
LFGELLLIH	9	Unmodified	_LFGELLLIH_					0	0	0			REV__ENSG00000077009|ENST00000168977|NMRK2	REV__ENSG00000077009|ENST00000168977|NMRK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.81494140625	2	527.81841	1053.62227	-0.027735	-1.4639E-05	-4.4763	-0.0023627	-4.5041	-0.0023773	527.8158666338968	43.794	0.74448	43.825	43.522	44.266	0.030827					53	20	4	0	0	0	0.26797	1	4070	4070		79.939	2.6216	1	5237400	+		39470	20578	27145	27198	44941	44941					0.09760094379430484
LFGGKALI	8	Unmodified	_LFGGKALI_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.58258056640625	2	409.760364	817.506175	0.40168	0.00016459	3.8629	0.0015829	4.2645	0.0017474	409.7619259573425	34.95	0.39796	35.001	34.8	35.198	0.050255					16	10	2	0	0	0	0.027866	1	2612	2612		10.185	5.0979	1	115630	+		39471	20831	27146	27199	44942	44942					0.09012195599370898
LFGGKALI	8	Unmodified	_LFGGKALI_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	409.760364	817.506175	0.17805	7.2958E-05	-3.0958	-0.0012685	-2.9177	-0.0011956	409.75903555758606	34.99	0.51981	34.774	34.467	34.987	-0.21555	-0.0048408	-0.0012462	NaN	10.185	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100340	+		39472	20831	27146	27199							0.09012195599370898
LFGGKALI	8	Unmodified	_LFGGKALI_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	409.760364	817.506175	-0.026051	-1.0675E-05	-2.7209	-0.0011149	-2.747	-0.0011256	409.7591451374393	34.871	0.4838	34.664	34.446	34.93	-0.20696	-0.11475	-0.00093907	NaN	10.185	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98407	+		39473	20831	27146	27199							0.09012195599370898
LFGGKALI	8	Unmodified	_LFGGKALI_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	409.760364	817.506175	-0.4319	-0.00017698	-2.3164	-0.00094919	-2.7483	-0.0011262	409.75928149707863	34.864	0.54597	34.677	34.402	34.948	-0.18675	-0.10186	-0.00060756	NaN	10.185	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165580	+		39474	20831	27146	27199							0.09012195599370898
LFGGVIRLGE	10	Unmodified	_LFGGVIRLGE_					0	0	0		ENST00000423538.6_1_1:156180712-156180916:+|nuORF	ENST00000423538.6_1_1:156180712-156180916:+|nuORF	ENST00000423538.6_1_1:156180712-156180916:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.811279296875	2	530.811116	1059.60768	-0.12349	-6.5549E-05	-0.43017	-0.00022834	-0.55366	-0.00029389	530.8112607259369	68.692	0.81184	68.449	68.187	68.999	-0.24277					44	19	4	0	0	0	0.57594	1	7975	7975		79.713	0	1	2515200			39475	14026	27147	27200	44943	44943					0.0802602223127451
LFGHDRSQP	9	Unmodified	_LFGHDRSQP_					0	0	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.298583984375	2	528.764697	1055.51484	-1.7574	-0.00092923	1.2853	0.00067962	-0.47207	-0.00024961	528.7652338534244	30.696	0.57752	30.696	30.426	31.003	0					23	13	2	0	0	0	0.024263	1	2017	2017		60.972	27.479	1	362440	+		39476	26713	27148	27201	44944	44944					-0.010694825020891585
LFGHFLSRIL	10	Unmodified	_LFGHFLSRIL_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.5721740722656	3	401.572998	1201.69716	-1.2093	-0.00048561	-1.6945	-0.00068046	-2.9037	-0.0011661	401.5722300164285	33.322	1.3812	33.156	32.679	34.06	-0.16565					87	34	4	0	0	0	1.0719	1	2339	2339		36.447	0.12911	1	1890600	+		39477	20220	27149	27202	44945	44945					0.10438276910645072
LFGHMVNAP	9	Oxidation (M)	_LFGHM(Oxidation (M))VNAP_		LFGHM(1)VNAP		LFGHM(60)VNAP	0	0	1			REV__ENST00000509463.5_1_4:159092565-159092631:+|nuORF	REV__ENST00000509463.5_1_4:159092565-159092631:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2489929199219	2	501.247295	1000.48004	0.15459	7.7489E-05	2.5116	0.0012589	2.6662	0.0013364	501.2484261595374	105.37	0.87786	105.2	104.94	105.81	-0.16484					56	31	2	0	0	0	0.4855	1	13097	13097		60.294	15.917	1	974540	+		39478	33960	27150	27203	44946	44946		925			-0.02018441634413648
LFGHMVNAP	9	Oxidation (M)	_LFGHM(Oxidation (M))VNAP_					0	0	1			REV__ENST00000509463.5_1_4:159092565-159092631:+|nuORF	REV__ENST00000509463.5_1_4:159092565-159092631:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	501.247295	1000.48004	-0.89121	-0.00044672	3.6086	0.0018088	2.7174	0.0013621	501.24901476838613	105.51	0.90276	105.38	104.97	105.88	-0.13099	0.087641	0.00069469	NaN	60.294	58	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802850	+		39479	33960	27150	27203				925			-0.02018441634413648
LFGIIKVDTT	10	Unmodified	_LFGIIKVDTT_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.7659912109375	2	553.826432	1105.63831	-0.95068	-0.00052651	-0.64982	-0.00035989	-1.6005	-0.0008864	553.8266078280462	60.836	0.8831	60.66	60.322	61.205	-0.1761					43	21	3	0	0	0	0.03519	1	6858	6858		31.53	0	1	421790	+		39480	36523	27151	27204	44947	44947					0.08971755825655237
LFGIKKENL	9	Unmodified	_LFGIKKENL_					0	0	0			REV__ENST00000296802.9_1_5:74062882-74062999:+|nuORF	REV__ENST00000296802.9_1_5:74062882-74062999:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3190307617188	2	531.321317	1060.62808	-0.23535	-0.00012505	-3.8656	-0.0020539	-4.1009	-0.0021789	531.3191412053131	93.774	1.1463	93.652	93.234	94.381	-0.12215					96	26	5	0	0	0	0.80003	1	11542	11542		39.253	3.6345	1	3642300	+		39481	30004	27152	27205	44948	44948					0.1001919289108173
LFGISITGGL	10	Unmodified	_LFGISITGGL_					0	0	0		ENST00000581467.1_1_18:71816037-71822653:+|nuORF;ENSG00000075336|ENST00000169551|TIMM21	ENST00000581467.1_1_18:71816037-71822653:+|nuORF	ENST00000581467.1_1_18:71816037-71822653:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.7738342285156	2	489.286943	976.559333	-0.50681	-0.00024798	-0.41667	-0.00020387	-0.92348	-0.00045185	489.28599259594597	65.783	0.45884	65.542	65.289	65.748	-0.24145					14	10	2	0	0	0	0.03519	1	7508	7508		47.916	18.766	1	82019			39482	1553	27153	27206	44949	44949					0.07011528591374372
LFGKMMIR	8	Unmodified	_LFGKMMIR_					0	0	0			REV__ENST00000442722.5_1_2:150062567-150062675:+|nuORF	REV__ENST00000442722.5_1_2:150062567-150062675:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.75830078125	2	498.280083	994.545614	0.14026	6.989E-05	2.3859	0.0011888	2.5262	0.0012587	498.2812727101362	68.533	0.50386	68.24	68.092	68.596	-0.29267					15	12	2	0	0	0	0.027866	1	8168	8168		35.201	0	1	97204	+		39483	32567	27154	27207	44950	44950					0.04812256286936645
LFGKQGFFP	9	Unmodified	_LFGKQGFFP_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7837524414062	2	520.781828	1039.5491	0.7045	0.00036689	3.7705	0.0019636	4.475	0.0023305	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	0.85941	1	13333	13333		35.201	4.883	1	3641400			39484	1774;107	27155	27208	44951	44951					0.030909656568155697
LFGLFESR	8	Unmodified	_LFGLFESR_					0	0	0		OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant;ENSG00000176555|ENST00000319988|OR4S1	OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant	OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.7646789550781	2	484.763635	967.512717	-0.15974	-7.7439E-05	3.262	0.0015813	3.1022	0.0015038	484.7652046218289	73.037	0.97219	72.838	72.539	73.511	-0.1981					46	23	4	0	0	0	0.96719	1	8567	8567		42.474	9.662	1	684730			39485	8648	27156	27209	44952	44952					0.027660887600859496
LFGLFESR	8	Unmodified	_LFGLFESR_					0	0	0		OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant;ENSG00000176555|ENST00000319988|OR4S1	OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant	OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.763635	967.512717	-0.35148	-0.00017038	3.1832	0.0015431	2.8317	0.0013727	484.76522101165193	73.224	0.84499	72.96	72.681	73.526	-0.26479	0.060525	-6.269E-05	NaN	42.474	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398620			39486	8648	27156	27209							0.027660887600859496
LFGLPMAPK	9	Unmodified	_LFGLPMAPK_					0	0	0			REV__ENST00000471948.5_1_2:263813-263963:-|nuORF	REV__ENST00000471948.5_1_2:263813-263963:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79705810546875	2	487.280606	972.546659	-0.95577	-0.00046573	2.8741	0.0014005	1.9183	0.00093477	487.2819026051527	75.546	1.3357	75.546	75.343	76.678	0					72	34	3	0	0	0	0.023775	1	9300	9300		38.806	0	1	600900	+		39487	33191	27157	27210	44953	44953					0.05928793927489551
LFGLRGAQAE	10	Unmodified	_LFGLRGAQAE_					0	0	0		GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant;nc|ENSG00000089639|Q9P107-2|GMIP;ENSG00000089639|ENST00000203556|GMIP	GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant	GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2901611328125	2	531.290548	1060.56654	-0.31935	-0.00016967	0.026878	1.428E-05	-0.29248	-0.00015539	531.2903051623847	51.162	0.58563	51.162	50.845	51.431	0					46	15	4	0	0	0	0.55353	1	5409	5409		82.241	7.9855	1	6257600			39488	1912	27158	27211	44954	44954					0.03868261191792044
LFGLRGAQAE	10	Unmodified	_LFGLRGAQAE_					0	0	0		GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant;nc|ENSG00000089639|Q9P107-2|GMIP;ENSG00000089639|ENST00000203556|GMIP	GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant	GMIP|p.T821Hfs*50|1|0.14|ENSG00000089639|chr19:19633815-19633815|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2904052734375	2	531.290548	1060.56654	-1.1374	-0.00060428	0.67085	0.00035642	-0.46653	-0.00024786	531.2906066197035	51.022	0.44682	51.109	50.855	51.302	0.087006					39	11	4	0	0	0	0.48123	1	5323	5323		90.37	8.1293	1	5239400			39489	1912	27158	27211	44955	44955					0.03868261191792044
LFGMSLMKF	9	Oxidation (M)	_LFGM(Oxidation (M))SLMKF_		LFGM(0.683)SLM(0.317)KF		LFGM(3.3)SLM(-3.3)KF	0	0	1		sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2764282226562	2	545.277206	1088.53986	-0.96677	-0.00052716	-4.2402	-0.0023121	-5.207	-0.0028392	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.59099	1	9611	9611		53.351	7.3792	2	52905000			39490	37914	27159	27212	44956	44956		992			-0.0008688701541359478
LFGPLFNKW	9	Unmodified	_LFGPLFNKW_					0	0	0			REV__ENST00000467008.5_1_6:16739520-16739679:-|nuORF	REV__ENST00000467008.5_1_6:16739520-16739679:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.3443603515625	2	561.310752	1120.60695	-0.74702	-0.00041931	0.74147	0.00041619	-0.0055575	-3.1195E-06	561.3116881500939	60.476	0.83426	60.222	59.94	60.774	-0.25373					46	20	3	0	0	0	0.024466	1	6745	6745		33.516	0	1	172280	+		39491	33055	27160	27213	44957	44957					0.051472275822106894
LFGPWLGLL	9	Unmodified	_LFGPWLGLL_					0	0	0		ENST00000467061.1_1_3:185212881-185213145:-|nuORF;ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	ENST00000467061.1_1_3:185212881-185213145:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.3025817871094	2	508.302396	1014.59024	0.18429	9.3676E-05	-1.4493	-0.00073669	-1.265	-0.00064301	508.3015235058035	54.586	1.1095	54.684	53.94	55.05	0.098015					86	31	4	0	0	0	0.65391	1	5910	5910		49.211	4.6797	1	4081500			39492	7167	27161	27214	44958	44958					0.08352726696284662
LFGRFTIKSDV	11	Unmodified	_LFGRFTIKSDV_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	642.3613891601562	2	641.861338	1281.70812	-1.2293	-0.00078904	-1.0611	-0.00068111	-2.2904	-0.0014701	642.3623778268305	111.26	0.25776	111.12	110.93	111.18	-0.14127					31	12	3	0	0	0	0.9728	1	13583	13583		42.864	2.0861	1	2783700			39493	715	27162	27215	44959	44959					0.0785363449426768
LFGRSDLGAI	10	Unmodified	_LFGRSDLGAI_					0	0	0			REV__nc|ENSG00000198931|P07741-2|APRT	REV__nc|ENSG00000198931|P07741-2|APRT	MSMS	OPSCC_39_ClassI_Rep-3	3	524.7951049804688	2	524.792924	1047.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.384	1	70.397	69.897	70.897	0.012421								0	0	0	0.75873	1	8424	8424		47.657	3.5405	1		+		39494	28523	27163	27216	44960	44960					0.049411453345555856
LFGVVEDW	8	Unmodified	_LFGVVEDW_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7841796875	2	482.742368	963.470183	0.48344	0.00023337	3.064	0.0014791	3.5475	0.0017125	482.74377972283924	72.427	0.40318	72.427	72.211	72.614	0					14	9	2	0	0	0	0.027866	1	8832	8832		37.028	5.0736	1	141300	+		39495	29205	27164	27217	44961	44961					-0.013013063681455606
LFHHSLLL	8	Unmodified	_LFHHSLLL_					0	0	0		nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	nc|ENSG00000056736|Q9NRM6-2|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2896728515625	2	490.28982	978.565087	-0.68142	-0.00033409	0.80792	0.00039612	0.1265	6.2023E-05	490.29004658681214	78.277	0.94228	78.023	77.701	78.644	-0.25471					48	21	3	0	0	0	0.75307	1	9329	9329		62.978	10.679	1	932330			39496	15048	27165	27218	44962	44962					0.07494671893721261
LFHHSLLL	8	Unmodified	_LFHHSLLL_					0	0	0		nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	nc|ENSG00000056736|Q9NRM6-2|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.28982	978.565087	-0.11385	-5.5819E-05	0.31056	0.00015227	0.19672	9.6447E-05	490.28986887817047	78.208	1.655	78.208	77.918	79.573	0	0.12275	0.00012838	NaN	62.978	88	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856380			39497	15048	27165	27218							0.07494671893721261
LFHHSLLL	8	Unmodified	_LFHHSLLL_					0	0	0		nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	nc|ENSG00000056736|Q9NRM6-2|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.28982	978.565087	0.49604	0.00024321	-0.2413	-0.00011831	0.25474	0.0001249	490.2896238880006	78.36	1.5301	78.168	77.849	79.379	-0.1921	0.083194	-0.00041277	NaN	62.978	63	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	690590			39498	15048	27165	27218							0.07494671893721261
LFHHSLLL	8	Unmodified	_LFHHSLLL_					0	0	0		nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	nc|ENSG00000056736|Q9NRM6-2|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.28982	978.565087	-0.5286	-0.00025917	0.70982	0.00034802	0.18122	8.8848E-05	490.2901650560338	78.276	1.1994	78.291	77.989	79.189	0.015907	0.2066	0.00051988	NaN	62.978	67	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605630			39499	15048	27165	27218							0.07494671893721261
LFHHSLLL	8	Unmodified	_LFHHSLLL_					0	0	0		nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	nc|ENSG00000056736|Q9NRM6-2|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	490.28982	978.565087	0.61321	0.00030065	-0.13861	-6.7961E-05	0.4746	0.00023269	490.28939673333764	78.158	0.80858	77.923	77.664	78.473	-0.23511	-0.1616	-0.00031207	NaN	62.978	52	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	765460			39500	15048	27165	27218							0.07494671893721261
LFHHSLLL	8	Unmodified	_LFHHSLLL_					0	0	0		nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	nc|ENSG00000056736|Q9NRM6-2|IL17RB	nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.28982	978.565087	0.17733	8.6945E-05	-0.30915	-0.00015157	-0.13182	-6.4629E-05	490.2895795540234	78.052	0.7229	77.896	77.617	78.34	-0.15591	-0.18882	-0.0004793	NaN	62.978	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	861850			39501	15048	27165	27218							0.07494671893721261
LFHLRLISAR	10	Unmodified	_LFHLRLISAR_					0	0	0			REV__ENST00000520347.5_1_8:102212246-102212288:-|nuORF	REV__ENST00000520347.5_1_8:102212246-102212288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	613.2905883789062	2	613.380032	1224.74551	-1.3838	-0.0008488	0.44491	0.0002729	-0.93889	-0.0005759	613.3804043804063	60.979	0.11491	60.773	60.695	60.81	-0.20599					4	2	2	0	0	0	0.03519	1	6809	6809		24.519	0	1	54027	+		39502	32052	27166	27219	44963	44963					0.14212770550557252
LFHQAHVAG	9	Unmodified	_LFHQAHVAG_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.26251220703125	2	490.259051	978.503549	-0.90998	-0.00044612	4.3767	0.0021457	3.4667	0.0016996	490.2620406764277	106.1	0.64438	105.97	105.75	106.4	-0.1328					40	27	2	0	0	0	0.97516	1	13222	13222		25.45	1.2474	1	190480			39503	8136	27167	27220	44964	44964					0.013437401944202065
LFHQLLAP	8	Unmodified	_LFHQLLAP_					0	0	0			REV__ENST00000361673.3_1_18:56295998-56296073:-|nuORF	REV__ENST00000361673.3_1_18:56295998-56296073:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.7744445800781	2	469.776545	937.538538	-0.67026	-0.00031487	0.12079	5.6745E-05	-0.54947	-0.00025813	469.77446644158243	43.882	1.1819	43.882	43.44	44.622	0					93	33	5	0	0	0	0.85409	1	4139	4139		54.765	1.828	1	7099900	+		39504	30947	27168	27221	44965	44965					0.0672698300236334
LFHRVQVL	8	Unmodified	_LFHRVQVL_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.3074645996094	2	506.308544	1010.60253	0.49317	0.0002497	-1.8077	-0.00091524	-1.3145	-0.00066554	506.30748460904033	83.987	1.1091	83.818	83.369	84.478	-0.16916					59	25	4	0	0	0	0.97924	1	10169	10169		40.573	4.9543	1	1437800			39505	8413	27169	27222	44966	44966					0.09765763159327889
LFHSLKLLV	9	Unmodified	_LFHSLKLLV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.343505859375	2	535.342052	1068.66955	-0.26946	-0.00014425	3.4172	0.0018294	3.1478	0.0016851	535.3438004645328	76.332	0.72398	76.344	76.051	76.775	0.011635					40	17	4	0	0	0	0.6504	1	9319	9319		49.442	3.4693	1	1972200			39506	6234	27170	27223	44967	44967					0.13796373650393434
LFHTLLRP	8	Unmodified	_LFHTLLRP_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.80401611328125	2	498.803094	995.591636	-0.032016	-1.5969E-05	0.76347	0.00038082	0.73146	0.00036485	498.80335500721344	52.799	1.1628	52.891	52.674	53.836	0.091938					99	31	4	0	0	0	1.0574	1	5664	5664		19.36	0	1	12396000	+		39507	30816	27171	27224	44968	44968					0.09366360785043071
LFHTLLRP	8	Unmodified	_LFHTLLRP_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.8034362792969	2	498.803094	995.591636	0.48095	0.0002399	0.55044	0.00027456	1.0314	0.00051446	498.80328376618695	53.002	1.465	52.743	52.326	53.791	-0.25838					117	39	6	0	0	0	1.0574	1	5511	5511		26.796	0	1	22222000	+		39508	30816	27171	27224	44969	44969					0.09366360785043071
LFHWRTRLRRK	11	Unmodified	_LFHWRTRLRRK_					0	0	0		ENST00000560110.1_1_15:44968687-44968816:-|nuORF;ENST00000558573.1_1_15:44968687-45003294:-|nuORF	ENST00000560110.1_1_15:44968687-44968816:-|nuORF	ENST00000560110.1_1_15:44968687-44968816:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.80126953125	3	523.651415	1567.93242	-0.16248	-8.5083E-05	-1.7145	-0.00089782	-1.877	-0.0009829	523.6512985303921	19.578	0.1814	19.578	19.463	19.644	0					5	3	2	0	0	0	0.024902	1	425	425		3.2113	0	1	29164			39509	16754	27172	27225	44970	44970					0.17116807158754455
LFICDLGKDE	10	Unmodified	_LFICDLGKDE_					0	0	0			REV__ENSG00000152404|ENST00000282251|CWF19L2	REV__ENSG00000152404|ENST00000282251|CWF19L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7830200195312	2	576.783907	1151.55326	-0.73592	-0.00042447	-2.0573	-0.0011866	-2.7932	-0.0016111	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	0.71272	1	7535	7535		66.429	6.0256	1	1832600	+		39510	24836	27173	27226	44971	44971					-0.016453577024549304
LFIDTVMKI	9	Unmodified	_LFIDTVMKI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3341064453125	2	540.312103	1078.60965	-1.4354	-0.00077554	-0.77606	-0.00041932	-2.2114	-0.0011949	540.3115213921038	79.384	1.0431	79.212	78.902	79.945	-0.17225					69	24	4	0	0	0	0.022832	1	9862	9862		93.195	52.623	1	1434900	+		39511	22560	27174	27227	44972	44972					0.07349314924863393
LFIDTVMKI	9	Unmodified	_LFIDTVMKI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3324584960938	2	540.312103	1078.60965	0.19692	0.0001064	-3.0677	-0.0016575	-2.8708	-0.0015511	540.3102416158952	79.33	0.79226	79.084	78.738	79.53	-0.2465					46	18	4	0	0	0	0.023655	1	9484	9484		79.713	24.936	1	1420000	+		39512	22560	27174	27227	44973	44973					0.07349314924863393
LFIDTVMKI	9	Unmodified	_LFIDTVMKI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.3341064453125	2	540.312103	1078.60965	-0.063113	-3.4101E-05	-3.2304	-0.0017454	-3.2935	-0.0017795	540.310379596111	79.287	1.1249	79.068	78.791	79.915	-0.21923					58	26	4	0	0	0	0.018452	1	9451	9451		122.18	37.26	1	1248700	+		39513	22560	27174	27227	44974	44974					0.07349314924863393
LFIESKTLQ	9	Unmodified	_LFIESKTLQ_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2966918945312	2	539.810782	1077.60701	-0.50371	-0.00027191	0.063196	3.4114E-05	-0.44051	-0.00023779	539.8106724073915	65.969	0.32366	65.727	65.583	65.907	-0.24145					10	7	2	0	0	0	0.024261	1	7546	7546		54.776	0	1	112890			39514	6516	27175	27228	44975	44975					0.07131182791590618
LFIFSVLPL	9	Unmodified	_LFIFSVLPL_					0	0	0			REV__ENST00000269389.7_1_17:80285027-80291704:-|nuORF	REV__ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.8272094726562	2	524.825704	1047.63685	1.1502	0.00060363	0.89043	0.00046732	2.0406	0.001071	524.8260243870249	98.019	1.8552	97.895	97.417	99.272	-0.12414					149	45	5	0	0	0	0.88411	1	12113	12113		33.516	0	1	12738000	+		39515	29790	27176	27229	44976	44976					0.1149416652756372
LFIGCQLR	8	Carbamidomethyl (C)	_LFIGC(Carbamidomethyl (C))QLR_	LFIGC(1)QLR		LFIGC(50)QLR		0	1	0		ENSG00000271824|ENST00000607574|SMIM32	ENSG00000271824|ENST00000607574|SMIM32	ENSG00000271824|ENST00000607574|SMIM32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7790222167969	2	503.778762	1005.54297	-0.671	-0.00033804	0.41536	0.00020925	-0.25564	-0.00012879	503.77873585412516	22.976	2.3026	23.05	21.256	23.559	0.073954					99	49	4	0	0	0	0.91239	1	824	824		50.025	10.772	1	711070			39516	11010	27177	27230	44977	44977	155				0.040421241536364505
LFIGVAIVVGV	11	Unmodified	_LFIGVAIVVGV_					0	0	0			REV__ENSG00000106537|ENST00000262067|TSPAN13	REV__ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8496704101562	2	543.84971	1085.68487	-0.17472	-9.5024E-05	-0.26255	-0.00014279	-0.43728	-0.00023781	543.8495346394983	77.023	0.8728	77.023	76.799	77.672	0					46	20	3	0	0	0	0.75705	1	9516	9516		60.294	0.17569	1	627080	+		39517	21625	27178	27231	44978	44978					0.1454524044761456
LFIKSYLII	9	Unmodified	_LFIKSYLII_					0	0	0			REV__ENSG00000146385|ENST00000275200|TAAR8	REV__ENSG00000146385|ENST00000275200|TAAR8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.3534545898438	2	555.352086	1108.68962	0.80031	0.00044446	1.968	0.0010929	2.7683	0.0015374	555.3530192204877	99.747	0.68683	99.622	99.234	99.921	-0.12458					49	18	4	0	0	0	1.0148	1	12374	12374		17.365	0	1	835110	+		39518	24484	27179	27232	44979	44979					0.13962124590375424
LFILDIVLN	9	Unmodified	_LFILDIVLN_					0	0	0		ENSG00000135519|ENST00000257981|KCNH3	ENSG00000135519|ENST00000257981|KCNH3	ENSG00000135519|ENST00000257981|KCNH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2775268554688	2	530.326068	1058.63758	-1.073	-0.00056902	-2.5572	-0.0013562	-3.6302	-0.0019252	530.3246652784894	80.495	0.68471	80.495	80.373	81.057	0					19	16	2	0	0	0	0.022924	1	9990	9990		97.473	7.1029	1	209510			39519	4904	27180	27233	44980	44980					0.11060961176622186
LFILDIVLN	9	Unmodified	_LFILDIVLN_					0	0	0		ENSG00000135519|ENST00000257981|KCNH3	ENSG00000135519|ENST00000257981|KCNH3	ENSG00000135519|ENST00000257981|KCNH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2777709960938	2	530.326068	1058.63758	-1.2733	-0.00067528	-2.1133	-0.0011207	-3.3866	-0.001796	530.3251686350847	80.674	0.33739	80.522	80.343	80.68	-0.15169					10	7	2	0	0	0	0.018368	1	9989	9989		115.46	30.099	1	140580			39520	4904	27180	27233	44981	44981					0.11060961176622186
LFILDIVLN	9	Unmodified	_LFILDIVLN_					0	0	0		ENSG00000135519|ENST00000257981|KCNH3	ENSG00000135519|ENST00000257981|KCNH3	ENSG00000135519|ENST00000257981|KCNH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2779541015625	2	530.326068	1058.63758	-0.93764	-0.00049725	-3.6294	-0.0019247	-4.567	-0.002422	530.3241138200882	80.498	0.33527	80.52	80.358	80.693	0.021439					12	7	2	0	0	0	0.022924	1	9932	9932		85.359	35.918	1	183410			39521	4904	27180	27233	44982	44982					0.11060961176622186
LFILEPPLDP	10	Unmodified	_LFILEPPLDP_					0	0	0		ENST00000372833.5_1_10:75543024-75543216:+|nuORF	ENST00000372833.5_1_10:75543024-75543216:+|nuORF	ENST00000372833.5_1_10:75543024-75543216:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.32763671875	2	577.328808	1152.64306	-1.3226	-0.00076359	-1.8796	-0.0010851	-3.2022	-0.0018487	577.3273610883565	37.644	0.87483	37.43	37.148	38.023	-0.21402					64	23	4	0	0	0	0.79525	1	3031	3031		60.972	6.1956	1	2143100			39522	13060	27181	27234	44983	44983					0.07284639968429474
LFILGTASHS	10	Unmodified	_LFILGTASHS_					0	0	0		ENSG00000100350|ENST00000397224|FOXRED2;nc|ENSG00000100350|Q8IWF2-2|FOXRED2	ENSG00000100350|ENST00000397224|FOXRED2	ENSG00000100350|ENST00000397224|FOXRED2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8187255859375	2	523.287474	1044.5604	-1.0761	-0.0005631	-2.6037	-0.0013625	-3.6798	-0.0019256	523.2882328823712	54.424	0.6799	54.424	54.043	54.723	0					29	19	2	0	0	0	0.03519	1	5945	5945		49.442	0	1	157250			39523	2188	27182	27235	44984	44984					0.03989742960266085
LFILLLCAVKY	11	Unmodified	_LFILLLCAVKY_					0	0	0			REV__ENSG00000123338|ENST00000293373|NCKAP1L	REV__ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	648.392578125	2	648.393428	1294.7723	-2.3194	-0.0015039	1.6976	0.0011007	-0.6218	-0.00040317	648.3947727182727	105.47	0.99561	105.35	105.03	106.03	-0.12444					66	30	4	0	0	0	1.0442	1	13155	13155		26.693	2.1737	1	1302600	+		39524	22689	27183	27236	44985	44985					0.13670698326882302
LFILWIIF	8	Unmodified	_LFILWIIF_					0	0	0		ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.759033203125	2	532.830789	1063.64703	0.32157	0.00017134	2.6498	0.0014119	2.9713	0.0015832	532.8320539652857	59.049	0.67536	58.807	58.461	59.137	-0.24165					45	16	4	0	0	0	0.027866	1	6470	6470		33.493	16.788	1	1559700			39525	13968	27184	27237	44986	44986					0.11774774252785392
LFINLTKID	9	Unmodified	_LFINLTKID_					0	0	0			REV__ENSG00000119638|ENST00000238616|NEK9	REV__ENSG00000119638|ENST00000238616|NEK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2783813476562	2	538.82115	1075.62775	0.33294	0.0001794	-0.81341	-0.00043828	-0.48047	-0.00025889	538.8205507860015	85.02	0.91573	85.02	84.669	85.584	0					43	21	3	0	0	0	0.024025	1	10643	10643		71.877	0	1	842800	+		39526	22468	27185	27238	44987	44987					0.0929577317122039
LFINLTKID	9	Unmodified	_LFINLTKID_					0	0	0			REV__ENSG00000119638|ENST00000238616|NEK9	REV__ENSG00000119638|ENST00000238616|NEK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2780151367188	2	538.82115	1075.62775	-1.1418	-0.00061523	0.58304	0.00031415	-0.55877	-0.00030108	538.8214089755478	84.968	0.70689	84.994	84.662	85.369	0.025528					38	16	3	0	0	0	0.024209	1	10548	10548		66.429	27.176	1	742730	+		39527	22468	27185	27238	44988	44988					0.0929577317122039
LFIPAKPLEV	10	Unmodified	_LFIPAKPLEV_					0	0	0			REV__nc|ENSG00000131480|O75106-2|AOC2	REV__nc|ENSG00000131480|O75106-2|AOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8460083007812	2	563.847167	1125.67978	-1.0244	-0.00057763	-3.1969	-0.0018025	-4.2213	-0.0023802	563.845239523675	62.875	0.87074	62.875	62.651	63.522	0					54	22	3	0	0	0	0.66532	1	7335	7335		69.628	8.6557	1	2526600	+		39528	23216	27186	27239	44989	44989					0.1219693658495089
LFIPRLSLH	9	Unmodified	_LFIPRLSLH_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3114013671875	2	548.337301	1094.66005	-0.67807	-0.00037181	-0.9695	-0.00053161	-1.6476	-0.00090342	548.3369125819069	56.257	0.35375	56.257	56.035	56.388	0					12	9	2	0	0	0	0.024447	1	6235	6235		40.778	0	1	140320	+		39529	24643	27187	27240	44990	44990					0.11650605364911826
LFIPWKKLY	9	Unmodified	_LFIPWKKLY_					0	0	0		nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENSG00000134452|ENST00000362091|FBH1;ENST00000494526.1_1_10:5948484-5951317:+|nuORF	nc|ENSG00000134452|Q8NFZ0-2|FBH1	nc|ENSG00000134452|Q8NFZ0-2|FBH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3656005859375	2	604.365527	1206.7165	-1.4686	-0.00088758	3.4912	0.0021099	2.0226	0.0012224	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	0.97455	1	13320	13320		25.45	11.313	1	4767200			39530	4797	27188	27241	44991	44991					0.12141233201555224
LFIQKLGEG	9	Unmodified	_LFIQKLGEG_					0	0	0		ENST00000491697.1_1_2:220110721-220110808:+|nuORF;ENST00000486813.1_1_2:220110721-220111856:+|nuORF;ENST00000475342.5_1_2:220110721-220112169:+|nuORF;ENST00000461417.5_1_2:220110721-220111658:+|nuORF;ENST00000496800.5_1_2:220110721-220112335:+|nuORF;ENST00000475696.5_1_2:220110721-220112662:+|nuORF;ENSG00000115661|ENST00000396738|STK16	ENST00000491697.1_1_2:220110721-220110808:+|nuORF	ENST00000491697.1_1_2:220110721-220110808:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.79290771484375	2	502.792392	1003.57023	-0.19496	-9.8022E-05	-0.196	-9.8548E-05	-0.39096	-0.00019657	502.79214073568073	64.23	0.83528	64.002	63.624	64.459	-0.22773					52	20	4	0	0	0	0.55828	1	7293	7293		55.504	0.72789	1	2163600			39531	3479	27189	27242	44992	44992					0.06858930965677246
LFIRGPLL	8	Unmodified	_LFIRGPLL_					0	0	0			REV__ENST00000241416.11_1_2:148602731-148654031:+|nuORF	REV__ENST00000241416.11_1_2:148602731-148654031:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.23052978515625	2	464.802563	927.590573	0.24	0.00011155	-4.4738	-0.0020794	-4.2338	-0.0019679	464.8002929951492	37.44	0.43732	37.44	37.195	37.632	0					23	11	3	0	0	0	0.027866	1	3036	3036		52.299	16.681	1	242410	+		39532	29449	27190	27243	44993	44993					0.1238814641612862
LFIRRMLT	8	Unmodified	_LFIRRMLT_					0	0	0			REV__ENSG00000134697|ENST00000373062|GNL2	REV__ENSG00000134697|ENST00000373062|GNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2852172851562	2	525.318054	1048.62156	-0.85798	-0.00045071	-4.2947	-0.0022561	-5.1527	-0.0027068	525.315639746456	65.884	0.84795	65.67	65.421	66.269	-0.21327					39	20	3	0	0	0	0.027866	1	7610	7610		65.803	0	1	319030	+		39533	23472	27191	27244	44994	44994					0.09918976458720863
LFISATSAL	9	Unmodified	_LFISATSAL_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7643737792969	2	461.765843	921.517133	-0.59485	-0.00027468	-2.1314	-0.00098422	-2.7263	-0.0012589	461.7647036992018	21.7	1.2853	21.7	21.146	22.432	0					51	26	3	0	0	0	0.67308	1	692	692		47.916	7.343	1	659160	+		39534	24260	27192	27245	44995	44995					0.05323553182984142
LFISATSAL	9	Unmodified	_LFISATSAL_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	461.765843	921.517133	-0.59485	-0.00027468	-2.1314	-0.00098422	-2.7263	-0.0012589	461.7647036992018	21.7	1.2853	21.7	21.146	22.432	0	-0.0050587	0.0002527	NaN	47.916	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659160	+		39535	24260	27192	27245							0.05323553182984142
LFISEKSKE	9	Unmodified	_LFISEKSKE_					0	0	0			REV__ENST00000367409.8_1_1:197111523-197111619:-|nuORF	REV__ENST00000367409.8_1_1:197111523-197111619:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2974853515625	2	540.800414	1079.58628	-1.2432	-0.00067233	-4.3862	-0.0023721	-5.6295	-0.0030444	540.7979791589204	77.193	1.1209	77.031	76.7	77.821	-0.16196					69	26	3	0	0	0	0.13494	1	9170	9170		102.77	2.4132	1	2968200	+		39536	31019	27193	27246	44996	44996					0.04966592411892634
LFISLSHYI	9	Unmodified	_LFISLSHYI_					0	0	0			REV__ENST00000409853.5_1_11:72726902-72851092:-|nuORF	REV__ENST00000409853.5_1_11:72726902-72851092:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.729248046875	2	546.808042	1091.60153	-0.82808	-0.0004528	-2.6695	-0.0014597	-3.4976	-0.0019125	546.8062013562804	61.48	0.41541	61.223	60.968	61.383	-0.25725					15	9	2	0	0	0	0.024325	1	6871	6871		60.294	19.721	1	169310	+		39537	31973	27194	27247	44997	44997					0.0593950399975256
LFISRPRTP	9	Unmodified	_LFISRPRTP_					0	0	0			REV__ENST00000406539.6_1_12:123459581-123460450:+|nuORF	REV__ENST00000406539.6_1_12:123459581-123460450:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2438354492188	2	543.824558	1085.63456	-1.1552	-0.00062825	0.21427	0.00011652	-0.94098	-0.00051173	543.8242702169416	64.53	0.31113	64.274	64.115	64.426	-0.25563					10	7	2	0	0	0	0.024477	1	7336	7336		27.882	0	1	92340	+		39538	31769	27195	27248	44998	44998					0.09517130842482402
LFISVSWIQEG	11	Unmodified	_LFISVSWIQEG_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	639.8438720703125	2	639.840071	1277.66559	0.62354	0.00039897	4.104	0.0026259	4.7276	0.0030249	640.3446580883069	100.07	0.55721	99.941	99.64	100.2	-0.12503					35	18	2	0	0	0	0.9728	1	12407	12407		42.864	6.4175	1	1115100	+		39539	21310	27196	27249	44999	44999					0.037862393660361704
LFIVIHYPS	9	Unmodified	_LFIVIHYPS_					0	0	0			REV__nc|ENSG00000160683|P32302-2|CXCR5	REV__nc|ENSG00000160683|P32302-2|CXCR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2371215820312	2	544.810585	1087.60662	0.073687	4.0145E-05	-4.2421	-0.0023112	-4.1684	-0.002271	544.8081792115768	58.88	0.6352	58.639	58.381	59.017	-0.24165					32	14	4	0	0	0	0.024354	1	6463	6463		47.916	12.297	1	608500	+		39540	25333	27197	27250	45000	45000					0.06631807862368078
LFIVPTPN	8	Unmodified	_LFIVPTPN_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.78143310546875	2	450.763104	899.511654	0.38669	0.00017431	-3.8164	-0.0017203	-3.4297	-0.001546	450.7607877114283	98.339	0.32883	98.339	98.233	98.562	0					10	7	2	0	0	0	0.027866	1	12560	12560		26.796	5.0938	1	57984			39541	18750	27198	27251	45001	45001					0.05787874391182868
LFKDKVVL	8	Unmodified	_LFKDKVVL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;PRMT1|p.V95I|1|0.11|ENSG00000126457|chr19:49682000-49682000|G/A|missense_variant;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.30712890625	2	481.307678	960.600803	0.17377	8.3638E-05	-0.27931	-0.00013443	-0.10553	-5.0795E-05	481.3073432975085	47.669	1.0317	47.572	47.007	48.039	-0.097553					69	27	3	0	0	0	0.53593	1	4687	4687		82.241	0	1	1904400			39542	4199	27199	27252	45002	45002					0.1189270935069544
LFKDKVVL	8	Unmodified	_LFKDKVVL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;PRMT1|p.V95I|1|0.11|ENSG00000126457|chr19:49682000-49682000|G/A|missense_variant;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.307678	960.600803	-0.48861	-0.00023517	0.2795	0.00013452	-0.20911	-0.00010065	481.3076379657574	47.93	1.1056	47.654	47.081	48.187	-0.27598	0.063997	0.00046327	NaN	82.241	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1864600			39543	4199	27199	27252							0.1189270935069544
LFKDKVVL	8	Unmodified	_LFKDKVVL_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1;nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;PRMT1|p.V95I|1|0.11|ENSG00000126457|chr19:49682000-49682000|G/A|missense_variant;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.307678	960.600803	0.4058	0.00019531	-0.60922	-0.00029322	-0.20342	-9.7908E-05	481.3071817570392	47.73	1.0084	47.543	47.043	48.052	-0.18684	-0.046222	-0.00039222	NaN	82.241	64	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1810900			39544	4199	27199	27252							0.1189270935069544
LFKELKKTN	9	Unmodified	_LFKELKKTN_					0	0	0		nc|ENSG00000197641|Q9UIV8-2|SERPINB13;ENSG00000197641|ENST00000344731|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	nc|ENSG00000197641|Q9UIV8-2|SERPINB13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.25341796875	2	560.839874	1119.66519	0.19168	0.0001075	-0.79777	-0.00044742	-0.60608	-0.00033992	560.8392959704324	67.929	0.48855	67.696	67.513	68.001	-0.23376					16	11	2	0	0	0	0.024257	1	7871	7871		58.23	0	1	144530			39545	10028	27200	27253	45003	45003					0.11014864436833705
LFKKISNT	8	Unmodified	_LFKKISNT_					0	0	0		ENST00000499860.6_1_6:109690056-109700950:-|nuORF	ENST00000499860.6_1_6:109690056-109700950:-|nuORF	ENST00000499860.6_1_6:109690056-109700950:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7870178222656	2	475.78711	949.559667	0.737	0.00035065	-0.87543	-0.00041652	-0.13843	-6.5863E-05	475.7866224351529	85.75	2.0796	85.6	84.582	86.661	-0.14967					104	48	4	0	0	0	1.0574	1	10433	10433		26.796	0	1	4960100			39546	15643	27201	27254	45004	45004					0.08286948311229025
LFKKKKVK	8	Unmodified	_LFKKKKVK_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.7633056640625	2	509.860412	1017.70627	-0.19136	-9.7567E-05	2.6996	0.0013764	2.5083	0.0012789	509.8617964395676	49.398	0.15125	49.118	49.049	49.201	-0.27977					5	3	2	0	0	0	0.027866	1	4953	4953		1.3276	0	1	38958			39547	10224	27202	27255	45005	45005					0.19812670266981058
LFKLEQGEPW	10	Unmodified	_LFKLEQGEPW_					0	0	0		nc|ENSG00000176024|Q6PF04-2|ZNF613;ENSG00000176024|ENST00000293471|ZNF613	nc|ENSG00000176024|Q6PF04-2|ZNF613	nc|ENSG00000176024|Q6PF04-2|ZNF613	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2208557128906	3	416.220401	1245.63937	2.0985	0.00087345	-0.95733	-0.00039846	1.1412	0.00047499	416.21973212096015	24.551	2.2653	24.37	23.582	25.848	-0.18089					142	52	4	0	0	0	1.0896	1	1108	1108		34.087	0	1	1613200			39548	8605	27203	27256	45006	45006					0.02637970194564332
LFKLKPLSN	9	Unmodified	_LFKLKPLSN_					0	0	0		nc|ENSG00000180287|Q8N7P1-3|PLD5;nc|ENSG00000180287|Q8N7P1-2|PLD5;ENST00000366545.5_1_1:242253158-242511450:-|nuORF;nc|ENSG00000180287|Q8N7P1-4|PLD5;ENSG00000180287|ENST00000536534|PLD5	nc|ENSG00000180287|Q8N7P1-3|PLD5	nc|ENSG00000180287|Q8N7P1-3|PLD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2777709960938	2	530.331685	1058.64882	-1.3476	-0.00071467	-1.053	-0.00055844	-2.4006	-0.0012731	530.3306023781295	80.17	0.67072	80.018	79.8	80.471	-0.15169					25	15	2	0	0	0	0.023837	1	9977	9977		54.776	0	1	133580			39549	8970	27204	27257	45007	45007					0.12183783270756976
LFKMCIVSY	9	Unmodified	_LFKMCIVSY_					0	0	0		ENST00000398341.7_1_21:44000866-44001409:+|nuORF	ENST00000398341.7_1_21:44000866-44001409:+|nuORF	ENST00000398341.7_1_21:44000866-44001409:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.2817993164062	2	552.285031	1102.55551	-0.30398	-0.00016789	-3.6569	-0.0020197	-3.9609	-0.0021876	552.2828332818825	78.344	1.2833	78.344	77.959	79.243	0					67	30	3	0	0	0	0.096521	1	9689	9689		111.65	33.704	1	2453000			39550	13623	27205	27258	45008	45008					0.008333995016528206
LFKMCIVSY	9	Unmodified	_LFKMCIVSY_					0	0	0		ENST00000398341.7_1_21:44000866-44001409:+|nuORF	ENST00000398341.7_1_21:44000866-44001409:+|nuORF	ENST00000398341.7_1_21:44000866-44001409:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.2822265625	2	552.285031	1102.55551	-0.51211	-0.00028283	-3.4796	-0.0019218	-3.9918	-0.0022046	552.2829268606272	78.348	1.241	78.364	77.948	79.189	0.015907					54	29	3	0	0	0	0.40179	2	9614	9614;9644		65.803	8.3505	1	2302000			39551	13623	27205	27258	45009;45010	45009					0.008333995016528206
LFKMIWSF	8	Unmodified	_LFKMIWSF_					0	0	0			REV__CYP2J2|p.P234S|1|0.45|ENSG00000134716|chr1:59909945-59909945|G/A|missense_variant	REV__CYP2J2|p.P234S|1|0.45|ENSG00000134716|chr1:59909945-59909945|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.2349243164062	2	536.288431	1070.56231	-0.22161	-0.00011884	3.1569	0.001693	2.9353	0.0015742	536.2900876517365	67.928	0.61394	67.694	67.387	68.001	-0.23376					25	14	2	0	0	0	0.027866	1	7800	7800		63.306	0	1	136510	+		39552	19644	27206	27259	45011	45011					0.029850804445231915
LFKNKIEF	8	Unmodified	_LFKNKIEF_					0	0	0			REV__ENST00000265838.8_1_11:108018210-108018318:+|nuORF	REV__ENST00000265838.8_1_11:108018210-108018318:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.82080078125	2	519.80276	1037.59097	-0.14913	-7.7517E-05	-0.79159	-0.00041147	-0.94072	-0.00048899	519.8028865700866	80.699	0.56114	80.461	80.206	80.767	-0.23784					23	13	3	0	0	0	0.027866	1	9685	9685		31.955	0	1	360590	+		39553	29750	27207	27260	45012	45012					0.07367521345327077
LFKQEGTCY	9	Carbamidomethyl (C)	_LFKQEGTC(Carbamidomethyl (C))Y_	LFKQEGTC(1)Y		LFKQEGTC(66)Y		0	1	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.2704467773438	2	573.268424	1144.5223	0.095732	5.488E-05	2.1423	0.0012281	2.238	0.001283	573.2695607823928	21.389	0.48846	21.198	20.931	21.42	-0.19072					26	9	4	0	0	0	0.39228	1	655	655		66.429	18.772	1	193120			39554	2008	27208	27261	45013	45013	26				-0.04418511016706361
LFKRKSKL	8	Unmodified	_LFKRKSKL_					0	0	0			REV__ENST00000574285.2_1_16:9197349-9197592:+|nuORF	REV__ENST00000574285.2_1_16:9197349-9197592:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7898254394531	2	510.339844	1018.66514	-0.0090772	-4.6325E-06	4.4343	0.002263	4.4252	0.0022583	510.34197047099985	82.474	0.47844	82.294	82.07	82.549	-0.18079					14	10	2	0	0	0	0.027866	1	9949	9949		40.778	18.818	1	43100	+		39555	35443	27209	27262	45014	45014					0.15654909227498592
LFKRRKSL	8	Unmodified	_LFKRRKSL_					0	0	0		ENST00000596960.1_1:149575565-149575637:+|nuORF	ENST00000596960.1_1:149575565-149575637:+|nuORF	ENST00000596960.1_1:149575565-149575637:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3079833984375	2	524.342918	1046.67128	-0.67962	-0.00035635	-3.2338	-0.0016956	-3.9134	-0.002052	524.3414158685273	75.875	0.27579	75.602	75.423	75.699	-0.27266					9	6	2	0	0	0	0.027866	1	8950	8950		33.516	1.5607	1	38029			39556	17440	27210	27263	45015	45015					0.1498142745901987
LFKRSISLP	9	Unmodified	_LFKRSISLP_					0	0	0		ENSG00000100583|ENST00000216471|SAMD15	ENSG00000100583|ENST00000216471|SAMD15	ENSG00000100583|ENST00000216471|SAMD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.326416015625	2	530.829309	1059.64407	-0.64121	-0.00034037	0.42216	0.00022409	-0.21905	-0.00011628	530.8278958442971	74.563	0.90234	74.573	74.268	75.171	0.0096512					48	21	4	0	0	0	0.024374	1	9063	9063		49.442	6.9671	1	522010			39557	2222	27211	27264	45016	45016					0.11662899127986748
LFKRTIQLP	9	Unmodified	_LFKRTIQLP_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.3322143554688	2	558.350409	1114.68626	0.45787	0.00025565	2.773	0.0015483	3.2309	0.001804	558.352487089087	59.314	0.16267	59.132	59.032	59.194	-0.18134					5	3	2	0	0	0	0.023417	1	6550	6550		90.777	21.149	1	47614			39558	8441	27212	27265	45017	45017					0.13350874536376978
LFKRTPPK	8	Unmodified	_LFKRTPPK_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7826232910156	2	493.810919	985.607286	-0.20018	-9.8853E-05	-0.17385	-8.585E-05	-0.37404	-0.0001847	493.81062513360854	46.87	0.64248	46.717	46.41	47.052	-0.15301					43	16	3	0	0	0	0.027866	1	4649	4649		20.947	5.3051	1	1025500			39559	6997	27213	27266	45018	45018					0.11390647302084744
LFKSEVPGPS	10	Unmodified	_LFKSEVPGPS_					0	0	0			REV__ENSG00000168143|ENST00000306858|FAM83B	REV__ENSG00000168143|ENST00000306858|FAM83B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7858276367188	2	530.787307	1059.56006	-0.67234	-0.00035687	-3.5768	-0.0018985	-4.2491	-0.0022554	530.7853938673493	53.076	0.52596	52.929	52.607	53.132	-0.14723					25	13	2	0	0	0	0.29487	1	5693	5693		109.48	10.849	1	5410800	+		39560	26234	27214	27267	45019	45019					0.03266323240427482
LFKSFPGPM	9	Unmodified	_LFKSFPGPM_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2706909179688	2	512.270238	1022.52592	-0.15004	-7.6862E-05	1.9896	0.0010192	1.8396	0.00094235	512.270910752159	104.19	1.4432	104.18	103.73	105.17	-0.0032196					89	40	3	0	0	0	0.92825	1	13309	13309		30.504	1.3541	1	318570			39561	6707	27215	27268	45020	45020					0.01556203547829682
LFKSHGNS	8	Unmodified	_LFKSHGNS_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.2283020019531	2	445.229959	888.445365	-0.82305	-0.00036645	-3.6598	-0.0016295	-4.4829	-0.0019959	445.22819562186953	26.116	1.543	25.953	25.716	27.259	-0.16331					112	40	4	0	0	0	1.0009	1	1351	1351		37.159	1.5408	1	5899800			39562	9104	27216	27269	45021	45021					-0.0033194145086099525
LFKSLHWRNS	10	Unmodified	_LFKSLHWRNS_					0	0	0		ENST00000244745.3_2_6:21594004-21594211:+|nuORF	ENST00000244745.3_2_6:21594004-21594211:+|nuORF	ENST00000244745.3_2_6:21594004-21594211:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	644.3504028320312	2	644.351471	1286.68839	0.27072	0.00017444	-3.0019	-0.0019343	-2.7312	-0.0017599	644.3494009474977	110.4	0.73016	110.41	110.11	110.84	0.0062943					57	20	4	0	0	0	1.1197	1	13936	13936		20.947	1.8434	1	415830			39563	11303	27217	27270	45022	45022					0.056513032741804636
LFKSSRIW	8	Unmodified	_LFKSSRIW_					0	0	0			REV__ENST00000371936.5_1_X:114248436-114249048:-|nuORF	REV__ENST00000371936.5_1_X:114248436-114249048:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.8009033203125	2	518.800552	1035.58655	-0.21114	-0.00010954	-0.092524	-4.8002E-05	-0.30366	-0.00015754	518.800350873803	63.355	1.013	63.132	62.774	63.787	-0.223					73	25	4	0	0	0	0.6536	1	7174	7174		71.296	10.324	1	5383100	+		39564	31183	27218	27271	45023	45023					0.07018056922402138
LFKSTADCP	9	Unmodified	_LFKSTADCP_					0	0	0		ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.23797607421875	2	491.239135	980.463718	-0.22789	-0.00011195	-3.8278	-0.0018804	-4.0557	-0.0019923	491.2372135779716	36.49	0.96249	36.49	36.195	37.158	0					69	25	5	0	0	0	0.22754	1	2894	2894		85.359	0.44396	1	3386900			39565	16489	27219	27272	45024	45024					-0.027295675911886974
LFKSTADCP	9	Unmodified	_LFKSTADCP_					0	0	0		ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.239135	980.463718	-0.67638	-0.00033227	-3.3433	-0.0016424	-4.0197	-0.0019746	491.23745226416975	36.449	1.1377	36.487	36.133	37.27	0.038044	0.061165	0.0027752	NaN	85.359	60	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3027000			39566	16489	27219	27272							-0.027295675911886974
LFKSTADCP	9	Unmodified	_LFKSTADCP_					0	0	0		ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.239135	980.463718	-0.54421	-0.00026734	-7.3384	-0.0036049	-7.8826	-0.0038722	491.23524571718315	36.627	0.59623	36.422	36.127	36.723	-0.20518	-0.0041431	-0.0011498	NaN	85.359	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209690			39567	16489	27219	27272							-0.027295675911886974
LFKSTADCP	9	Unmodified	_LFKSTADCP_					0	0	0		ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.239135	980.463718	0.051342	2.5221E-05	-8.4565	-0.0041541	-8.4051	-0.0041289	491.234834167587	36.639	0.60437	36.422	36.205	36.809	-0.21661	-0.0035813	-0.0022484	NaN	85.359	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247890			39568	16489	27219	27272							-0.027295675911886974
LFKSTADCP	9	Unmodified	_LFKSTADCP_					0	0	0		ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	ENST00000545051.2_1_18:46447744-46469079:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.239135	980.463718	1.8685	0.0009179	-10.035	-0.0049297	-8.1668	-0.0040118	491.234107724481	36.615	0.52362	36.417	36.132	36.656	-0.19829	-0.0089515	-0.0037996	NaN	85.359	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188770			39569	16489	27219	27272							-0.027295675911886974
LFKTVLKEG	9	Unmodified	_LFKTVLKEG_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.8157958984375	2	517.815867	1033.61718	-0.65988	-0.0003417	0.25858	0.0001339	-0.4013	-0.0002078	517.8157870820621	27.887	0.72626	27.719	27.487	28.213	-0.16816					43	17	4	0	0	0	0.35646	1	1579	1579		68.787	2.3575	1	893140	+		39570	23834	27220	27273	45025	45025					0.10171790516778856
LFKTVLKEG	9	Unmodified	_LFKTVLKEG_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2681274414062	2	517.815867	1033.61718	-0.65988	-0.0003417	0.25858	0.0001339	-0.4013	-0.0002078	517.8157870820621	27.887	0.72626	27.719	27.487	28.213	-0.16816					43	17	4	0	0	0	0.024261	1	1587	1587		54.776	0	1	893140	+		39571	23834	27220	27273	45026	45026					0.10171790516778856
LFKVLRVDT	9	Unmodified	_LFKVLRVDT_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8163452148438	2	545.834591	1089.65463	-0.52386	-0.00028594	2.5061	0.0013679	1.9822	0.0010819	545.836454637535	67.225	0.20428	67.001	66.939	67.144	-0.22374					6	4	2	0	0	0	0.024427	1	7743	7743		42.396	6.7778	1	124980			39572	5106	27221	27274	45027	45027					0.11338881782398857
LFKWAERRL	9	Unmodified	_LFKWAERRL_					0	0	0			REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.9084777832031	3	406.90838	1217.70331	-0.68971	-0.00028065	1.023	0.00041626	0.33327	0.00013561	406.90872223770316	55.457	1.0348	55.241	55.004	56.038	-0.21551					81	28	4	0	0	0	0.70156	1	5946	5946		45.972	3.108	1	3138700	+		39573	21484	27222	27275	45028	45028					0.10316795142171031
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.8025512695312	2	522.802426	1043.5903	-0.74457	-0.00038926	0.76075	0.00039772	0.016181	8.4596E-06	522.8026666660162	97.124	2.4312	97.124	96.748	99.179	0					119	55	5	0	0	0	0.028181	2	12398	12398;12423		143.02	18.425	1	2413800	+		39574	27658	27223	27276	45029;45030	45029					0.07024681905613761
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.8024291992188	2	522.802426	1043.5903	0.34027	0.00017789	-0.37055	-0.00019372	-0.030281	-1.5831E-05	522.8021152422203	97.025	2.4702	97.034	96.619	99.089	0.0089111					130	56	4	0	0	0	0.08613	1	12340	12340		115.46	12.686	1	2722800	+		39575	27658	27223	27276	45031	45031					0.07024681905613761
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.8024291992188	2	522.802426	1043.5903	0.83839	0.00043831	-0.91316	-0.0004774	-0.074763	-3.9086E-05	522.8018759562021	97.147	2.5107	97.147	96.793	99.304	-3.0518E-05					129	57	5	0	0	0	0.11848	4	12305	12305;12310;12322;12347		106.42	15.639	1	2484000	+		39576	27658	27223	27276	45032;45033;45034;45035	45032					0.07024681905613761
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.802490234375	2	522.802426	1043.5903	0.59174	0.00030936	-0.56448	-0.00029511	0.027264	1.4254E-05	522.8020295785374	97.06	1.5574	96.924	96.263	97.82	-0.13671					116	34	4	0	0	0	0.074956	2	11977	11977;12002		119.56	7.9085	1	2308700	+		39577	27658	27223	27276	45036;45037	45036					0.07024681905613761
LFLALELEP	9	Unmodified	_LFLALELEP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.8024291992188	2	522.802426	1043.5903	-0.090795	-4.7468E-05	0.050425	2.6362E-05	-0.04037	-2.1106E-05	522.8023658714742	97.073	2.0363	96.912	96.168	98.204	-0.16106					130	47	4	0	0	0	0.062871	1	12000	12000		123.99	8.5298	1	2317900	+		39578	27658	27223	27276	45038	45038					0.07024681905613761
LFLAVSGAIIK	11	Unmodified	_LFLAVSGAIIK_					0	0	0			REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3305053710938	2	566.360442	1130.70633	-0.31086	-0.00017606	0.43763	0.00024786	0.12677	7.1798E-05	566.360571210452	90.544	1.0717	90.527	89.999	91.07	-0.016716					45	25	2	0	0	0	0.024759	1	11370	11370		34.173	0	1	289830	+		39579	27004	27224	27277	45039	45039					0.1462062547630012
LFLDVLFPL	9	Unmodified	_LFLDVLFPL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000102595|ENST00000376747|UGGT2;ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2783813476562	2	538.823161	1075.63177	-1.0029	-0.0005404	-3.2072	-0.0017281	-4.2101	-0.0022685	538.8213037509479	84.963	0.8348	84.905	84.605	85.439	-0.057617					39	19	3	0	0	0	0.024466	1	10609	10609		42.474	3.6683	1	716070			39580	2418;5040	27225	27278	45040	45040					0.09697862664938839
LFLDYKQTSL	10	Unmodified	_LFLDYKQTSL_					0	0	0			REV__ENST00000343813.9_1_1:6283540-6283621:-|nuORF	REV__ENST00000343813.9_1_1:6283540-6283621:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	409.8913879394531	3	409.892173	1226.65469	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.435	1	28.283	27.783	28.783	-0.15195								0	0	0	0.73925	1	1637	1637		35.152	1.2304	1		+		39581	30672	27226	27279	45041	45041					0.05042836991765398
LFLEEAKID	9	Unmodified	_LFLEEAKID_					0	0	0			REV__SETD3|p.V123A|1|0.12|ENSG00000183576|chr14:99459163-99459163|A/G|missense_variant	REV__SETD3|p.V123A|1|0.12|ENSG00000183576|chr14:99459163-99459163|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3052368164062	2	539.294965	1076.57538	0.34323	0.0001851	-0.50941	-0.00027472	-0.16617	-8.9616E-05	539.2943952825906	86.141	0.60996	85.999	85.668	86.278	-0.14218					16	13	2	0	0	0	0.02435	1	10441	10441		60.972	4.2509	1	59491	+		39582	27584	27227	27280	45042	45042					0.040151900376031335
LFLEKISPFFL	11	Unmodified	_LFLEKISPFFL_					0	0	0		ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	ENST00000302517.7_1_5:139063018-139063435:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9328308105469	3	451.93208	1352.77441	1.0325	0.00046661	0.25708	0.00011618	1.2896	0.0005828	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0592	1	12357	12357		22.562	0.87584	1	1299700			39583	11958	27228	27281	45043	45043					0.11213450336299502
LFLELFRRYTK	11	Unmodified	_LFLELFRRYTK_					0	0	0			REV__ENSG00000175175|ENST00000308249|PPM1E	REV__ENSG00000175175|ENST00000308249|PPM1E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.95880126953125	3	495.9574	1484.85037	0.1597	7.9203E-05	3.2228	0.0015984	3.3825	0.0016776	495.95869291912163	102.24	1.8619	102.11	101.46	103.32	-0.12931					117	44	4	0	0	0	1.0811	1	12703	12703		16.53	4.097	1	658600	+		39584	26923	27229	27282	45044	45044					0.12733847236449947
LFLELLEQY	9	Unmodified	_LFLELLEQY_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.2949829101562	2	584.31844	1166.62233	-0.88451	-0.00051683	-2.5418	-0.0014852	-3.4263	-0.002002	584.3168361198465	56.381	0.43407	56.156	55.952	56.386	-0.2248					22	10	3	0	0	0	0.024292	1	6099	6099		68.787	10.976	1	444410			39585	9894	27230	27283	45045	45045					0.04568049588760914
LFLEQRQF	8	Unmodified	_LFLEQRQF_					0	0	0		ENST00000354667.8_2_7:26240216-26240336:-|nuORF	ENST00000354667.8_2_7:26240216-26240336:-|nuORF	ENST00000354667.8_2_7:26240216-26240336:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7965087890625	2	540.795466	1079.57638	-0.090998	-4.9211E-05	4.027	0.0021778	3.936	0.0021286	540.7975130489131	77.376	0.96463	77.114	76.854	77.818	-0.26202					60	23	4	0	0	0	0.37125	1	9195	9195		101.21	0	1	2597100			39586	12629	27231	27284	45046	45046					0.03977449197191163
LFLFARRQV	9	Unmodified	_LFLFARRQV_					0	0	0			REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.3455200195312	2	575.3482	1148.68185	-0.38186	-0.0002197	-4.2392	-0.002439	-4.621	-0.0026587	575.3456405295979	97.221	1.199	97.06	96.639	97.838	-0.16106					88	26	5	0	0	0	0.97516	1	12056	12056		25.45	0.93098	1	4066100	+		39587	19195	27232	27285	45047	45047					0.11345410113449361
LFLFFLRW	8	Unmodified	_LFLFFLRW_					0	0	0		AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|16|2|anti-sense	AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|16|2|anti-sense	AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|16|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.296630859375	2	571.331488	1140.64842	-1.9541	-0.0011165	3.0169	0.0017236	1.0627	0.00060717	571.3327474065999	64.915	0.36092	64.915	64.763	65.124	0					19	9	3	0	0	0	0.027866	1	7694	7694		39.021	0	1	166020			39588	74	27233	27286	45048	45048					0.08372408341551818
LFLGEQDL	8	Unmodified	_LFLGEQDL_					0	0	0		ENST00000491270.1_1_10:76995548-76995725:-|nuORF	ENST00000491270.1_1_10:76995548-76995725:-|nuORF	ENST00000491270.1_1_10:76995548-76995725:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7635803222656	2	467.74765	933.480748	-0.075421	-3.5278E-05	4.103	0.0019191	4.0275	0.0018839	467.74940801294713	69.372	0.97742	69.372	68.938	69.915	0					64	24	4	0	0	0	0.027866	1	8395	8395		60.294	12.637	1	1326600			39589	15454	27234	27287	45049	45049					0.011346762862785909
LFLGKKEP	8	Unmodified	_LFLGKKEP_					0	0	0			REV__ENSG00000106266|ENST00000222990|SNX8	REV__ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7637939453125	2	466.284203	930.553853	0.83041	0.00038721	2.3809	0.0011102	3.2113	0.0014974	466.2852021249044	70.058	0.45249	69.765	69.467	69.92	-0.29291					15	10	2	0	0	0	0.027866	1	8424	8424		62.978	0	1	159520	+		39590	21605	27235	27288	45050	45050					0.08579849799559724
LFLGPHLYEG	10	Unmodified	_LFLGPHLYEG_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2783203125	2	573.303124	1144.5917	0.16975	9.7319E-05	-3.4703	-0.0019895	-3.3005	-0.0018922	573.3009577747736	78.773	0.39001	78.542	78.346	78.736	-0.23141					13	8	2	0	0	0	0.03519	1	9387	9387		38.806	0	1	69975			39591	9246	27236	27289	45051	45051					0.025183159943708233
LFLHIGSL	8	Unmodified	_LFLHIGSL_					0	0	0		ENST00000395146.8_1_4:88056873-88057011:+|nuORF	ENST00000395146.8_1_4:88056873-88057011:+|nuORF	ENST00000395146.8_1_4:88056873-88057011:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2696228027344	2	450.271096	898.527639	-0.67799	-0.00030528	-4.0769	-0.0018357	-4.7549	-0.002141	450.269144272415	43.746	1.0146	43.746	43.367	44.382	0					78	28	5	0	0	0	0.61897	1	4109	4109		74.517	0	1	6173800			39592	13505	27237	27290	45052	45052					0.07431580628076517
LFLHIGSL	8	Unmodified	_LFLHIGSL_					0	0	0		ENST00000395146.8_1_4:88056873-88057011:+|nuORF	ENST00000395146.8_1_4:88056873-88057011:+|nuORF	ENST00000395146.8_1_4:88056873-88057011:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.26934814453125	2	450.271096	898.527639	-0.73235	-0.00032976	-3.9134	-0.0017621	-4.6457	-0.0020918	450.26915918046706	43.908	1.0411	43.763	43.353	44.394	-0.14471					71	29	4	0	0	0	0.58212	2	4124	4114;4124		77.944	8.8509	1	6393400			39593	13505	27237	27290	45053;45054	45054					0.07431580628076517
LFLIARISAP	10	Unmodified	_LFLIARISAP_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7984619140625	2	550.844959	1099.67537	0.02772	1.5269E-05	0.68717	0.00037853	0.71489	0.00039379	551.3471077246948	55.898	0.49434	55.898	55.645	56.139	0					27	13	3	0	0	0	0.03519	1	6190	6190		27.882	12.24	1	120720	+		39594	24691	27238	27291	45055	45055					0.12951472162058053
LFLIKYGW	8	Unmodified	_LFLIKYGW_					0	0	0			REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1;REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2894287109375	2	520.302396	1038.59024	0.15875	8.2597E-05	-4.0459	-0.0021051	-3.8872	-0.0020225	520.2996149393177	62.749	0.48304	62.807	62.683	63.166	0.058018					20	11	2	0	0	0	0.027866	1	7238	7238		21.702	0.7554	1	182680	+		39595	21318;23678	27239	27292	45056	45056					0.07248726696275298
LFLILGDAAP	10	Unmodified	_LFLILGDAAP_					0	0	0		ENST00000409414.1_1_9:140120177-140120285:+|nuORF	ENST00000409414.1_1_9:140120177-140120285:+|nuORF	ENST00000409414.1_1_9:140120177-140120285:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7813110351562	2	515.302593	1028.59063	0.22041	0.00011358	-4.1559	-0.0021415	-3.9355	-0.002028	515.3002710439696	71.629	0.4939	71.629	71.263	71.756	0					28	12	3	0	0	0	0.03519	1	8669	8669		60.294	7.205	1	2046500			39596	13779	27240	27293	45057	45057					0.07748101625452364
LFLILNLSP	9	Unmodified	_LFLILNLSP_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	OPSCC_39_ClassI_Rep-1	1	515.3216552734375	2	515.320786	1028.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.565	1	71.565	71.065	72.065	0								0	0	0	0.064204	1	8680	8680		102.77	0	1				39597	4246	27241	27294	45058	45058					0.11384978522164602
LFLILNLSP	9	Unmodified	_LFLILNLSP_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.318115234375	2	515.320786	1028.62702	-0.16043	-8.2674E-05	0.06236	3.2135E-05	-0.098072	-5.0539E-05	515.3203797922889	71.675	1.2413	71.686	71.05	72.291	0.010735					77	30	4	0	0	0	0.18915	1	8632	8632		90.777	2.1338	1	4529000			39598	4246	27241	27294	45059	45059					0.11384978522164602
LFLIVCLTL	9	Unmodified	_LFLIVCLTL_					0	0	0			REV__ENST00000256496.7_1_3:5221727-5221844:+|nuORF	REV__ENST00000256496.7_1_3:5221727-5221844:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.8190307617188	2	517.819564	1033.62458	0.2515	0.00013023	-0.85201	-0.00044119	-0.60051	-0.00031096	517.8189853050599	91.961	1.1386	91.819	91.357	92.495	-0.14131					76	26	4	0	0	0	0.97516	1	11276	11276		25.45	1.2474	1	1075800	+		39599	29555	27242	27295	45060	45060					0.10910806792867334
LFLKCITW	8	Carbamidomethyl (C)	_LFLKC(Carbamidomethyl (C))ITW_	LFLKC(1)ITW		LFLKC(110)ITW		0	1	0		ENST00000519948.3_1_12:74932331-74932382:+|nuORF	ENST00000519948.3_1_12:74932331-74932382:+|nuORF	ENST00000519948.3_1_12:74932331-74932382:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7969970703125	2	540.799163	1079.58377	-1.2432	-0.00067233	-2.0726	-0.0011209	-3.3158	-0.0017932	540.7979791589204	77.193	1.1209	77.031	76.7	77.821	-0.16196					69	26	3	0	0	0	0.34196	1	9207	9207		105.27	6.6394	1	2968200			39600	15967	27243	27296	45061	45061	213				0.04716465473234166
LFLKSREAE	9	Unmodified	_LFLKSREAE_					0	0	0		ENST00000453708.6_1_11:62603082-62607042:-|nuORF	ENST00000453708.6_1_11:62603082-62607042:-|nuORF	ENST00000453708.6_1_11:62603082-62607042:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.729736328125	2	546.806031	1091.59751	-0.44869	-0.00024535	0.023791	1.3009E-05	-0.4249	-0.00023234	546.8059792133378	62.016	0.67427	61.759	61.383	62.058	-0.25725					35	16	3	0	0	0	0.024381	1	6895	6895		45.952	0	1	745980			39601	14552	27244	27297	45062	45062					0.05537414506034111
LFLKVESNN	9	Unmodified	_LFLKVESNN_					0	0	0			REV__ENSG00000176895|ENST00000641490|OR51A7	REV__ENSG00000176895|ENST00000641490|OR51A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2932739257812	2	532.292756	1062.57096	0.1591	8.4687E-05	3.9785	0.0021177	4.1376	0.0022024	532.2947852509603	104.13	0.43569	103.96	103.68	104.11	-0.16791					16	10	2	0	0	0	0.77768	1	12944	12944		40.778	1.5253	1	376910	+		39602	27055	27245	27298	45063	45063					0.04217725614716983
LFLKWDLVQ	9	Unmodified	_LFLKWDLVQ_					0	0	0		ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	581.3037719726562	2	581.336967	1160.65938	-2.3654	-0.0013751	-3.5823	-0.0020825	-5.9477	-0.0034576	581.3348022402745	30.194	0.69382	30.194	29.773	30.467	0					36	16	3	0	0	0	0.024021	1	1953	1953		68.787	15.85	1	324580			39603	12230	27246	27299	45064	45064					0.0854776592516373
LFLLFLPLA	9	Unmodified	_LFLLFLPLA_					0	0	0			REV__ENSG00000186509|ENST00000335397|OR9Q1	REV__ENSG00000186509|ENST00000335397|OR9Q1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.83642578125	2	523.836071	1045.65759	3.9114	0.0020489	-0.87384	-0.00045775	3.0376	0.0015912	523.835504798805	17.997	0.34682	17.755	17.528	17.875	-0.24256					15	6	3	0	0	0	0.93795	1	229	229		29.842	0	1	58371	+		39604	27863	27247	27300	45065	45065					0.1365875690721623
LFLLGPEQL	9	Unmodified	_LFLLGPEQL_					0	0	0		ENST00000409781.1_1_2:87016528-87017758:-|nuORF;ENST00000352580.7_2_2:87013010-87017728:-|nuORF;ENST00000283635.7_2_2:87016528-87018429:-|nuORF	ENST00000409781.1_1_2:87016528-87017758:-|nuORF	ENST00000409781.1_1_2:87016528-87017758:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7818603515625	2	515.302593	1028.59063	-0.21108	-0.00010877	-3.2985	-0.0016997	-3.5096	-0.0018085	515.3006928993186	71.699	0.81295	71.71	71.319	72.132	0.010735					52	21	4	0	0	0	0.024209	1	8597	8597		76.774	17.992	1	1924300			39605	11739	27248	27301	45066	45066					0.07748101625475101
LFLLILPAT	9	Unmodified	_LFLLILPAT_					0	0	0		ENST00000581412.1_1_17:72596059-72600281:+|nuORF	ENST00000581412.1_1_17:72596059-72600281:+|nuORF	ENST00000581412.1_1_17:72596059-72600281:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.82415771484375	2	500.825704	999.636855	-0.34832	-0.00017445	-3.1219	-0.0015635	-3.4703	-0.001738	500.8240276331338	33.584	1.4557	33.584	33.251	34.706	0					109	37	4	0	0	0	0.83263	1	2467	2467		37.028	0	1	2682000			39606	17163	27249	27302	45067	45067					0.13702166527559712
LFLLLPIFHTW	11	Unmodified	_LFLLLPIFHTW_					0	0	0			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.60821533203125	3	467.27607	1398.80638	1.5332	0.00071645	-0.33098	-0.00015466	1.2023	0.00056179	467.2759821519637	97.599	0.73053	97.597	97.367	98.097	-0.0020752					22	16	2	0	0	0	0.024828	1	12420	12420		18.531	5.5736	1	83645	+		39607	28045	27250	27303	45068	45068					0.12292862810113547
LFLLLVEW	8	Unmodified	_LFLLLVEW_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.28076171875	2	516.810054	1031.60555	0.044991	2.3252E-05	4.1619	0.0021509	4.2069	0.0021742	516.8129767040377	75.012	0.41163	74.748	74.446	74.858	-0.26325					11	9	2	0	0	0	0.027866	1	8856	8856		37.028	1.8278	1	50710	+		39608	26475	27251	27304	45069	45069					0.09101593493460314
LFLLMHPSI	9	Unmodified	_LFLLMHPSI_					0	0	0		ENSG00000138653|ENST00000264363|NDST4;NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant;nc|ENSG00000138653|Q9H3R1-2|NDST4	ENSG00000138653|ENST00000264363|NDST4	ENSG00000138653|ENST00000264363|NDST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.803955078125	2	535.806988	1069.59942	-0.61941	-0.00033188	-3.8959	-0.0020874	-4.5153	-0.0024193	535.8049072078487	66.371	0.7664	66.09	65.56	66.326	-0.28148					36	20	2	0	0	0	0.52323	1	7883	7883		57.811	3.035	1	13108000			39609	5261	27252	27305	45070	45070					0.06740751990287208
LFLLMHPSI	9	Unmodified	_LFLLMHPSI_					0	0	0		ENSG00000138653|ENST00000264363|NDST4;NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant;nc|ENSG00000138653|Q9H3R1-2|NDST4	ENSG00000138653|ENST00000264363|NDST4	ENSG00000138653|ENST00000264363|NDST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.8016967773438	2	535.806988	1069.59942	-0.72217	-0.00038695	-4.0229	-0.0021555	-4.7451	-0.0025425	535.8048402797197	66.038	0.96497	66.068	65.448	66.413	0.030098					44	27	2	0	0	0	0.40179	1	7794	7794		65.803	5.6849	1	12776000			39610	5261	27252	27305	45071	45071					0.06740751990287208
LFLLPHADTGD	11	Unmodified	_LFLLPHADTGD_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.5757141113281	3	400.208273	1197.60299	1.5551	0.00062237	-3.1955	-0.0012789	-1.6404	-0.00065652	400.2068263681692	18.443	0.73989	18.286	17.705	18.445	-0.15637					39	14	4	0	0	0	0.024735	1	238	238		46.457	13.644	1	103230	+		39611	27310	27253	27306	45072	45072					0.012090932978253477
LFLLPTLW	8	Unmodified	_LFLLPTLW_					0	0	0		ENST00000490711.5_1_6:32138036-32144343:-|nuORF;ENST00000476663.1_1_6:32139072-32143632:-|nuORF;ENSG00000204310|ENST00000375107|AGPAT1	ENST00000490711.5_1_6:32138036-32144343:-|nuORF;ENSG00000204310|ENST00000375107|AGPAT1	ENSG00000204310|ENST00000375107|AGPAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2763977050781	2	501.804771	1001.59499	-0.39555	-0.00019849	-1.1611	-0.00058262	-1.5566	-0.00078111	501.803116155612	65.153	0.52812	64.918	64.768	65.296	-0.2345					17	12	2	0	0	0	0.027866	1	7408	7408		28.254	0	1	79203			39612	15437;10328	27254	27307	45073	45073					0.09425610839025467
LFLLPYLPL	9	Unmodified	_LFLLPYLPL_					0	0	0			REV__ENST00000333319.6_1_7:156432277-156432460:-|nuORF	REV__ENST00000333319.6_1_7:156432277-156432460:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8212280273438	2	544.841354	1087.66815	0.36185	0.00019715	-1.8858	-0.0010275	-1.524	-0.00083033	544.8419518646776	63.614	0.36248	63.614	63.41	63.772	0					18	9	3	0	0	0	0.024475	1	7464	7464		39.021	0	1	268690	+		39613	30503	27255	27308	45074	45074					0.12782739561635026
LFLLQPLW	8	Unmodified	_LFLLQPLW_					0	0	0			REV__ENST00000411500.5_1_6:32520646-32520676:-|nuORF	REV__ENST00000411500.5_1_6:32520646-32520676:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7929077148438	2	515.310221	1028.60589	0.052696	2.7155E-05	-2.5956	-0.0013376	-2.543	-0.0013104	515.8111901673649	72.025	0.32012	71.75	71.549	71.87	-0.2751					13	7	2	0	0	0	0.027866	1	8422	8422		42.474	7.2737	1	89671	+		39614	31982	27256	27309	45075	45075					0.0927301321332834
LFLLQPLW	8	Unmodified	_LFLLQPLW_					0	0	0			REV__ENST00000411500.5_1_6:32520646-32520676:-|nuORF	REV__ENST00000411500.5_1_6:32520646-32520676:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7932739257812	2	515.310221	1028.60589	0.3311	0.00017062	-4.2199	-0.0021745	-3.8888	-0.0020039	515.3078531694164	71.965	0.40121	71.704	71.441	71.843	-0.26199					18	9	3	0	0	0	0.027866	1	8427	8427		65.897	10.393	1	79106	+		39615	31982	27256	27309	45076	45076					0.0927301321332834
LFLLRSWH	8	Unmodified	_LFLLRSWH_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2470092773438	2	536.308544	1070.60253	0.3343	0.00017929	0.93752	0.0005028	1.2718	0.00068209	536.8112142916086	71.532	0.89226	71.244	70.459	71.351	-0.28857					37	21	2	0	0	0	0.027866	1	8518	8518		29.15	4.9468	1	735260	+		39616	20528	27257	27310	45077	45077					0.07005763159327216
LFLMLKIKG	9	Unmodified	_LFLMLKIKG_					0	0	0		ENST00000409682.7_1_2:162267931-162268081:+|nuORF	ENST00000409682.7_1_2:162267931-162268081:+|nuORF	ENST00000409682.7_1_2:162267931-162268081:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.842041015625	2	531.840831	1061.66711	-0.88284	-0.00046953	3.6207	0.0019256	2.7379	0.0014561	531.8427301514997	51.466	1.4974	51.318	50.828	52.326	-0.14735					110	41	5	0	0	0	0.96855	1	5432	5432		26.796	0.10319	1	9916600			39617	13788	27258	27311	45078	45078					0.13874201921112217
LFLMLKIKG	9	Unmodified	_LFLMLKIKG_					0	0	0		ENST00000409682.7_1_2:162267931-162268081:+|nuORF	ENST00000409682.7_1_2:162267931-162268081:+|nuORF	ENST00000409682.7_1_2:162267931-162268081:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.807861328125	2	531.840831	1061.66711	-0.69582	-0.00037006	-2.2279	-0.0011849	-2.9237	-0.0015549	531.8409749345835	47.806	0.28454	47.653	47.542	47.827	-0.15301					13	8	2	0	0	0	0.024487	1	4781	4781		24.203	7.7296	1	232610			39618	13788	27258	27311	45079	45079					0.13874201921112217
LFLMLKIKG	9	Unmodified	_LFLMLKIKG_					0	0	0		ENST00000409682.7_1_2:162267931-162268081:+|nuORF	ENST00000409682.7_1_2:162267931-162268081:+|nuORF	ENST00000409682.7_1_2:162267931-162268081:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8091430664062	2	531.840831	1061.66711	-1.0769	-0.00057275	-3.2445	-0.0017255	-4.3214	-0.0022983	531.838802672837	47.665	0.21547	47.725	47.554	47.769	0.059097					10	6	2	0	0	0	0.024487	1	4745	4745		24.203	4.206	1	133900			39619	13788	27258	27311	45080	45080					0.13874201921112217
LFLMLQTIT	9	Unmodified	_LFLMLQTIT_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.3103637695312	2	540.312103	1078.60965	-0.11131	-6.0142E-05	-3.0148	-0.0016289	-3.1261	-0.0016891	540.3102901938151	105.34	0.82503	105.34	105.06	105.89	0					35	22	2	0	0	0	0.55828	1	13542	13542		55.504	4.1688	1	1127800			39620	4340	27259	27312	45081	45081					0.07349314924863393
LFLNEHNEP	9	Unmodified	_LFLNEHNEP_					0	0	0			REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.2899169921875	2	556.772188	1111.52982	0.22009	0.00012254	2.6779	0.001491	2.8979	0.0016135	556.7737053900935	65.587	0.28417	65.624	65.422	65.706	0.037384					11	7	2	0	0	0	0.023837	1	7670	7670		74.255	23.062	1	119500	+		39621	22557	27260	27313	45082	45082					-0.021480354247842115
LFLNEHNEP	9	Unmodified	_LFLNEHNEP_					0	0	0			REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	556.772188	1111.52982	-0.30462	-0.0001696	2.8646	0.0015949	2.56	0.0014253	557.2752876076402	65.822	0.36633	65.549	65.43	65.796	-0.27282	-0.037372	0.00010352	NaN	74.255	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54181	+		39622	22557	27260	27313							-0.021480354247842115
LFLPIHQFVI	10	Unmodified	_LFLPIHQFVI_					0	0	0			REV__ENSG00000103381|ENST00000381774|CPPED1	REV__ENSG00000103381|ENST00000381774|CPPED1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.58221435546875	3	409.581382	1225.72232	-0.35352	-0.00014479	3.0144	0.0012346	2.6609	0.0010898	409.58256872949914	34.951	1.3237	34.929	34.593	35.917	-0.021763					96	34	5	0	0	0	1.118	1	2645	2645		30.318	2.2362	1	2038200	+		39623	21382	27261	27314	45083	45083					0.11848331713235893
LFLPLFPVQ	9	Unmodified	_LFLPLFPVQ_					0	0	0		nc|ENSG00000188818|Q9H8X9-2|ZDHHC11;ENSG00000206077|ENST00000508859|ZDHHC11B;ENSG00000188818|ENST00000283441|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2783813476562	2	537.323328	1072.6321	-0.97563	-0.00052423	-2.9514	-0.0015858	-3.927	-0.0021101	537.3214292039951	84.904	0.99385	84.834	84.35	85.344	-0.069214					36	23	2	0	0	0	0.024183	1	10609	10609		71.378	4.9486	1	182760			39624	9755	27262	27315	45084	45084					0.09869282384806866
LFLPLFPVQ	9	Unmodified	_LFLPLFPVQ_					0	0	0		nc|ENSG00000188818|Q9H8X9-2|ZDHHC11;ENSG00000206077|ENST00000508859|ZDHHC11B;ENSG00000188818|ENST00000283441|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	nc|ENSG00000188818|Q9H8X9-2|ZDHHC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2780151367188	2	537.323328	1072.6321	-1.1337	-0.00060917	-3.135	-0.0016845	-4.2687	-0.0022937	537.3213061872077	84.885	0.9136	84.911	84.497	85.41	0.025528					36	21	2	0	0	0	0.024354	1	10548	10548		57.811	18.79	1	200980			39625	9755	27262	27315	45085	45085					0.09869282384806866
LFLPLLSPPL	10	Unmodified	_LFLPLLSPPL_					0	0	0		ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.3540649414062	2	555.352086	1108.68962	0.4637	0.00025752	1.9279	0.0010707	2.3916	0.0013282	555.3530876150478	99.618	0.75595	99.618	99.224	99.98	0					46	17	4	0	0	0	1.1329	1	12760	12760		27.882	4.8398	1	1104100			39626	16344	27263	27316	45086	45086					0.13962124590375424
LFLPPLYSL	9	Unmodified	_LFLPPLYSL_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8169555664062	2	531.815336	1061.61612	0.26845	0.00014276	2.469	0.0013131	2.7375	0.0014558	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.72875	1	10354	10354		44.117	3.5442	1	1303400			39627	9280	27264	27317	45087	45087					0.08777576147872423
LFLPQGSCSV	10	Unmodified	_LFLPQGSCSV_					0	0	0		ENST00000558848.1_1_15:90760965-90763201:+|nuORF	ENST00000558848.1_1_15:90760965-90763201:+|nuORF	ENST00000558848.1_1_15:90760965-90763201:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7671508789062	2	525.76806	1049.52157	-0.18077	-9.5045E-05	-3.9116	-0.0020566	-4.0924	-0.0021516	525.7658376524748	31.072	0.97741	30.92	30.597	31.574	-0.15231					52	24	3	0	0	0	0.96822	1	2011	2011		49.536	1.8787	1	1406200			39628	16760	27265	27318	45088	45088					-0.0012130566574342083
LFLPSGQPSN	10	Unmodified	_LFLPSGQPSN_					0	0	0			REV__ENSG00000237452|ENST00000457052|MEIOSIN	REV__ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.27783203125	2	530.277106	1058.53966	-1.293	-0.00068567	1.5146	0.00080314	0.22152	0.00011747	530.2772742143383	80.578	0.94865	80.426	79.966	80.915	-0.15169					63	22	4	0	0	0	0.54901	1	10002	10002		82.75	0	1	1626500	+		39629	28943	27266	27319	45089	45089					0.01273152580643
LFLPSGQPSN	10	Unmodified	_LFLPSGQPSN_					0	0	0			REV__ENSG00000237452|ENST00000457052|MEIOSIN	REV__ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2779541015625	2	530.277106	1058.53966	-0.8715	-0.00046214	0.85095	0.00045124	-0.020547	-1.0895E-05	530.2771434763347	80.382	0.62674	80.404	80.146	80.773	0.021446					44	14	4	0	0	0	0.59716	1	9932	9932		77.318	3.3428	1	1761900	+		39630	28943	27266	27319	45090	45090					0.01273152580643
LFLQHNSKSH	10	Unmodified	_LFLQHNSKSH_					0	0	0			REV__nc|ENSG00000176925|Q8NH61|OR51F2	REV__nc|ENSG00000176925|Q8NH61|OR51F2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.24530029296875	3	404.215761	1209.62546	1.8121	0.00073246	2.2213	0.00089788	4.0333	0.0016303	404.2166283571557	32.275	1.343	32.338	31.839	33.182	0.062885					73	34	3	0	0	0	0.03519	1	2136	2136		46.457	14.927	1	329100	+		39631	36969	27267	27320	45091	45091					0.029027374861243516
LFLQHNSKSH	10	Unmodified	_LFLQHNSKSH_					0	0	0			REV__nc|ENSG00000176925|Q8NH61|OR51F2	REV__nc|ENSG00000176925|Q8NH61|OR51F2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.215761	1209.62546	0.60138	0.00024309	3.402	0.0013751	4.0034	0.0016182	404.21706455573656	32.648	0.83406	32.648	32.379	33.213	0	0.22806	-6.9263E-06	NaN	31.634	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	752710	+		39632	36969	27267	27320							0.029027374861243516
LFLQHNSKSH	10	Unmodified	_LFLQHNSKSH_					0	0	0			REV__nc|ENSG00000176925|Q8NH61|OR51F2	REV__nc|ENSG00000176925|Q8NH61|OR51F2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	404.215761	1209.62546	0.040069	1.6196E-05	4.4184	0.001786	4.4585	0.0018022	404.21737455110474	32.435	1.025	32.446	32.023	33.048	0.011795	0.026435	0.0012256	NaN	31.634	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595400	+		39633	36969	27267	27320							0.029027374861243516
LFLQNDPGF	9	Unmodified	_LFLQNDPGF_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7670288085938	2	525.766374	1049.5182	-0.53183	-0.00027962	-0.33764	-0.00017752	-0.86947	-0.00045714	525.7660071979817	31.069	1.0712	30.884	30.533	31.604	-0.18503					44	26	3	0	0	0	0.43973	1	2029	2029		63.306	0	1	1292000			39634	2266	27268	27321	45092	45092					-0.004582324480907118
LFLQYPEGEG	10	Unmodified	_LFLQYPEGEG_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.781982421875	2	576.782222	1151.54989	-1.2871	-0.00074239	1.3528	0.00078029	0.065701	3.7895E-05	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	0.59716	1	7530	7530		77.318	6.0219	1	1856800			39635	10844	27269	27322	45093	45093					-0.019822844848249588
LFLRCPSL	8	Carbamidomethyl (C)	_LFLRC(Carbamidomethyl (C))PSL_	LFLRC(1)PSL		LFLRC(120)PSL		0	1	0			REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.3054504394531	2	503.281137	1004.54772	0.15745	7.9241E-05	0.8111	0.00040821	0.96855	0.00048745	503.28131921396914	68.001	0.6881	68.001	67.568	68.256	0					36	17	3	0	0	0	0.027866	1	8166	8166		115.46	14.247	1	391180	+		39636	34009	27270	27323	45094	45094	449				0.0456300829639531
LFLREKEA	8	Unmodified	_LFLREKEA_					0	0	0			REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.305419921875	2	503.290017	1004.56548	-0.16302	-8.2044E-05	1.6947	0.00085292	1.5317	0.00077087	503.2907871900653	68.51	0.65041	68.248	67.774	68.424	-0.26166					19	14	2	0	0	0	0.027866	1	7911	7911		90.777	24.879	1	261670	+		39637	21247	27271	27324	45095	45095					0.06338046822895649
LFLREKEA	8	Unmodified	_LFLREKEA_					0	0	0			REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.290017	1004.56548	0.3149	0.00015849	0.76116	0.00038309	1.0761	0.00054157	503.29030734496433	68.423	0.39778	68.18	67.992	68.39	-0.24277	-0.02179	0.00014463	NaN	90.777	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105890	+		39638	21247	27271	27324							0.06338046822895649
LFLREKEA	8	Unmodified	_LFLREKEA_					0	0	0			REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	REV__ENST00000590143.5_1_18:12662154-12700964:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.290017	1004.56548	0.20496	0.00010315	-0.95821	-0.00048226	-0.75325	-0.0003791	503.2889910865251	68.408	0.60486	68.178	67.835	68.439	-0.23048	-0.024309	-0.0015861	NaN	90.777	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96782	+		39639	21247	27271	27324							0.06338046822895649
LFLRLLCP	8	Unmodified	_LFLRLLCP_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3;ENST00000506838.5_1_4:668467-669238:+|nuORF	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79705810546875	2	487.796423	973.578294	-0.47015	-0.00022934	1.897	0.00092535	1.4269	0.00069602	487.7972225991239	75.737	1.5239	75.492	75.191	76.715	-0.24455					98	39	4	0	0	0	0.9224	1	9286	9286		49.211	5.094	1	9873000			39640	2635	27272	27325	45096	45096					0.09044786681442929
LFLRQLIL	8	Unmodified	_LFLRQLIL_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.28424072265625	2	508.33677	1014.65899	0.5348	0.00027186	-1.0889	-0.00055355	-0.55414	-0.00028169	508.3361583244408	84.287	0.72834	84.128	83.844	84.573	-0.15869					32	16	3	0	0	0	0.027866	1	10200	10200		52.299	0	1	252080			39641	1789	27273	27326	45097	45097					0.15224390996002057
LFLSSFYK	8	Unmodified	_LFLSSFYK_					0	0	0		CNTNAP4|p.V1058L|1|0.18|ENSG00000152910|chr16:76538292-76538292|G/C|missense_variant	CNTNAP4|p.V1058L|1|0.18|ENSG00000152910|chr16:76538292-76538292|G/C|missense_variant	CNTNAP4|p.V1058L|1|0.18|ENSG00000152910|chr16:76538292-76538292|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7927551269531	2	502.776211	1003.53787	-0.096533	-4.8535E-05	-3.7414	-0.0018811	-3.8379	-0.0019296	503.2761640090468	63.873	0.40057	63.646	63.549	63.949	-0.22773					15	9	2	0	0	0	0.027866	1	7281	7281		65.803	5.5092	1	383390			39642	463	27274	27327	45098	45098					0.0362414356266072
LFLSSNPSE	9	Unmodified	_LFLSSNPSE_					0	0	0		ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.25189208984375	2	497.248015	992.481476	1.168	0.00058079	-3.0548	-0.001519	-1.8868	-0.00093821	497.24642496456283	106.75	0.73323	106.75	106.36	107.09	0					39	23	2	0	0	0	0.59099	1	13717	13717		53.351	7.3995	1	323370			39643	15826	27275	27328	45099	45099					-0.015065290646589347
LFLSSNPSE	9	Unmodified	_LFLSSNPSE_					0	0	0		ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.248015	992.481476	0.08932	4.4414E-05	-1.6773	-0.00083402	-1.5879	-0.0007896	497.24708930016243	106.71	0.69812	106.71	106.4	107.1	-0.003479	-0.23687	6.4072E-05	NaN	53.351	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258240			39644	15826	27275	27328							-0.015065290646589347
LFLSSNPSE	9	Unmodified	_LFLSSNPSE_					0	0	0		ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.248015	992.481476	0.15887	7.8997E-05	-1.7577	-0.000874	-1.5988	-0.00079501	497.24698250030383	106.77	0.62969	106.77	106.55	107.18	0.0018311	-0.18101	-1.5898E-05	NaN	53.351	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324780			39645	15826	27275	27328							-0.015065290646589347
LFLSSNPSE	9	Unmodified	_LFLSSNPSE_					0	0	0		ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.248015	992.481476	-0.18621	-9.2592E-05	-1.4557	-0.00072384	-1.6419	-0.00081643	497.24725958330544	107.22	0.54169	107.1	106.81	107.35	-0.1238	0.14914	0.00028444	NaN	53.351	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246260			39646	15826	27275	27328							-0.015065290646589347
LFLSSNPSE	9	Unmodified	_LFLSSNPSE_					0	0	0		ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	497.248015	992.481476	-1.2478	-0.00062046	-0.28404	-0.00014124	-1.5318	-0.0007617	497.2477177378575	107.31	0.45866	107.17	106.87	107.33	-0.1346	0.22587	0.0014496	NaN	53.351	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226660			39647	15826	27275	27328							-0.015065290646589347
LFLSSNPSE	9	Unmodified	_LFLSSNPSE_					0	0	0		ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	497.248015	992.481476	0.41276	0.00020524	-1.9764	-0.00098274	-1.5636	-0.0007775	497.2469663724333	107.35	0.42033	107.19	106.9	107.32	-0.15772	0.24493	-0.00023337	NaN	53.351	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245080			39648	15826	27275	27328							-0.015065290646589347
LFLVALLAR	9	Unmodified	_LFLVALLAR_					0	0	0		ENSG00000136404|ENST00000322019|TM6SF1;nc|ENSG00000136404|Q9BZW5-2|TM6SF1;ENST00000564988.5_1_15:83776528-83788831:+|nuORF	ENSG00000136404|ENST00000322019|TM6SF1	ENSG00000136404|ENST00000322019|TM6SF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2818298339844	2	508.33677	1014.65899	0.54202	0.00027553	-0.51145	-0.00025999	0.030575	1.5542E-05	508.33637412866375	84.309	0.76614	84.106	83.864	84.63	-0.20329					37	17	3	0	0	0	0.023775	1	10199	10199		38.806	0	1	252410			39649	5015	27276	27329	45100	45100					0.1522439099597932
LFLVASSTGPS	11	Unmodified	_LFLVASSTGPS_					0	0	0			REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7922973632812	2	539.792589	1077.57063	0.1911	0.00010316	-3.9821	-0.0021495	-3.791	-0.0020464	539.7904852482321	65.88	0.57912	65.88	65.605	66.184	0					28	14	2	0	0	0	0.49334	1	7801	7801		76.774	12.567	1	7576500	+		39650	23558	27277	27330	45101	45101					0.03494305894855643
LFLVASSTGPS	11	Unmodified	_LFLVASSTGPS_					0	0	0			REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.792236328125	2	539.792589	1077.57063	-0.64873	-0.00035018	-3.9299	-0.0021213	-4.5786	-0.0024715	539.7910349261623	66.208	0.79122	65.927	65.421	66.213	-0.28148					70	20	5	0	0	0	0.53206	1	7820	7820		74.255	4.6274	1	8542200	+		39651	23558	27277	27330	45102	45102					0.03494305894855643
LFLVIMLKK	9	Unmodified	_LFLVIMLKK_					0	0	0		ENST00000484368.1_1_1:172362920-172362983:-|nuORF	ENST00000484368.1_1_1:172362920-172362983:-|nuORF	ENST00000484368.1_1_1:172362920-172362983:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8294677734375	2	552.864306	1103.71406	-0.87058	-0.00048131	-1.0632	-0.00058782	-1.9338	-0.0010691	552.8630548573839	48.763	0.35703	48.83	48.622	48.979	0.066795					10	9	2	0	0	0	0.024541	1	4955	4955		12.959	2.0936	1	88590			39652	15299	27278	27331	45103	45103					0.1663506147224325
LFLVWRRS	8	Unmodified	_LFLVWRRS_					0	0	0		ENST00000370873.8_1_20:60714937-60715996:-|nuORF	ENST00000370873.8_1_20:60714937-60715996:-|nuORF	ENST00000370873.8_1_20:60714937-60715996:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.3011474609375	2	538.821818	1075.62908	-0.56367	-0.00030372	-0.2683	-0.00014457	-0.83197	-0.00044829	538.8212203893407	75.707	0.59306	75.448	75.117	75.71	-0.25865					17	14	2	0	0	0	0.027866	1	8949	8949		53.351	10.955	1	89314			39653	12976	27279	27332	45104	45104					0.09429452050653708
LFLYRQNN	8	Unmodified	_LFLYRQNN_					0	0	0			REV__ENST00000556795.1_1_14:104195195-104195542:+|nuORF	REV__ENST00000556795.1_1_14:104195195-104195542:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2825927734375	2	534.285266	1066.55598	0.14511	7.7529E-05	-1.8214	-0.00097313	-1.6763	-0.0008956	534.2843186877622	106.34	0.98719	106.18	105.77	106.76	-0.16132					86	45	3	0	0	0	0.88442	1	13214	13214		52.299	0	1	230390	+		39654	21143	27280	27333	45105	45105					0.025362785373772567
LFMKTRII	8	Unmodified	_LFMKTRII_					0	0	0			REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF;REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.3140563964844	2	511.31498	1020.61541	0.8758	0.00044781	-1.2166	-0.00062207	-0.3408	-0.00017426	511.31427303415046	51.287	1.3055	51.175	50.749	52.055	-0.11163					51	34	2	0	0	0	0.42327	2	5264	5264;5276		94.006	11.701	1	1990500	+		39655	32928;20487	27281	27334	45106;45107	45106					0.10592458227199586
LFMKTRII	8	Unmodified	_LFMKTRII_					0	0	0			REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF;REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	511.31475830078125	2	511.31498	1020.61541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.524	1	51.247	50.747	51.747	-0.27643								0	0	0	0.33041	1	5287	5287		82.305	2.3658	1		+		39656	32928;20487	27281	27334	45108	45108					0.10592458227199586
LFMKTRII	8	Unmodified	_LFMKTRII_					0	0	0			REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF;REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	511.3141784667969	2	511.31498	1020.61541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.376	1	51.195	50.695	51.695	-0.18071								0	0	0	0.35313	1	5269	5269		101.21	17.924	1		+		39657	32928;20487	27281	27334	45109	45109					0.10592458227199586
LFMQCAAAL	9	Unmodified	_LFMQCAAAL_					0	0	0			REV__ENSG00000137312|ENST00000376389|FLOT1	REV__ENSG00000137312|ENST00000376389|FLOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.2412109375	2	484.240624	966.466695	-0.20606	-9.9781E-05	-0.090382	-4.3766E-05	-0.29644	-0.00014355	484.2404355449911	67.146	0.55473	66.903	66.685	67.239	-0.24346					26	13	3	0	0	0	0.64155	1	7718	7718		50.025	0.58299	1	961170	+		39658	23747	27282	27335	45110	45110					-0.017880157380204764
LFMQCAAAL	9	Unmodified	_LFMQCAAAL_					0	0	0			REV__ENSG00000137312|ENST00000376389|FLOT1	REV__ENSG00000137312|ENST00000376389|FLOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.240624	966.466695	0.38828	0.00018802	-0.70985	-0.00034374	-0.32156	-0.00015571	484.2400891407498	67.125	0.70332	66.877	66.715	67.418	-0.2484	0.0048437	-0.00060624	NaN	50.025	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514430	+		39659	23747	27282	27335							-0.017880157380204764
LFMQCAAAL	9	Unmodified	_LFMQCAAAL_					0	0	0			REV__ENSG00000137312|ENST00000376389|FLOT1	REV__ENSG00000137312|ENST00000376389|FLOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.240624	966.466695	-0.4537	-0.0002197	0.25021	0.00012116	-0.20349	-9.854E-05	484.2406360958532	67.061	0.59933	66.837	66.714	67.313	-0.22374	-0.035288	0.00032356	NaN	50.025	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827800	+		39660	23747	27282	27335							-0.017880157380204764
LFMQCAAAL	9	Unmodified	_LFMQCAAAL_					0	0	0			REV__ENSG00000137312|ENST00000376389|FLOT1	REV__ENSG00000137312|ENST00000376389|FLOT1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	484.240624	966.466695	-0.20606	-9.9781E-05	-0.090382	-4.3766E-05	-0.29644	-0.00014355	484.2404355449911	67.146	0.55473	66.903	66.685	67.239	-0.24346	0.030445	-6.2946E-06	NaN	50.025	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	961170	+		39661	23747	27282	27335							-0.017880157380204764
LFMTFHLK	8	Unmodified	_LFMTFHLK_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.78369140625	2	518.786056	1035.55756	-0.97022	-0.00050334	-2.8782	-0.0014931	-3.8484	-0.0019965	518.7843928540477	34.064	1.0362	34.114	33.726	34.762	0.050255					61	25	3	0	0	0	0.5947	1	2456	2456		76.774	7.9873	1	1887100			39662	3189	27283	27336	45111	45111					0.04120196301755641
LFNALSNVF	9	Unmodified	_LFNALSNVF_					0	0	0		ENST00000264245.8_2_3:119135520-119135586:+|nuORF	ENST00000264245.8_2_3:119135520-119135586:+|nuORF	ENST00000264245.8_2_3:119135520-119135586:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7745361328125	2	512.776742	1023.53893	-0.33513	-0.00017185	-3.8501	-0.0019743	-4.1853	-0.0021461	512.7747435810525	47.713	1.0478	47.615	47.314	48.362	-0.097553					76	28	4	0	0	0	0.75397	1	4709	4709		42.396	1.618	1	12679000			39663	11558	27284	27337	45112	45112					0.0281035793158253
LFNDREEP	8	Unmodified	_LFNDREEP_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7900695800781	2	510.243264	1018.47197	-0.55058	-0.00028093	1.3879	0.00070817	0.83733	0.00042724	510.24325842792234	41.885	0.29501	41.653	41.508	41.803	-0.23186					14	7	3	0	0	0	0.027866	1	3703	3703		38.806	14.603	1	90112	+		39664	20046	27285	27338	45113	45113					-0.03652297350186018
LFNEEVVLI	9	Unmodified	_LFNEEVVLI_					0	0	0			REV__ENST00000368324.4_1_1:155851335-155851446:+|nuORF	REV__ENST00000368324.4_1_1:155851335-155851446:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3052368164062	2	538.305332	1074.59611	0.37092	0.00019967	-0.60988	-0.0003283	-0.23896	-0.00012863	538.3048003228321	85.789	1.0281	85.64	85.285	86.313	-0.14967					76	23	4	0	0	0	0.17455	1	10441	10441		94.006	19.751	1	1617000	+		39665	31049	27286	27339	45114	45114					0.06179780417301117
LFNEHESCL	9	Unmodified	_LFNEHESCL_					0	0	0			REV__ENST00000433011.5_1_X:100673982-100699132:+|nuORF	REV__ENST00000433011.5_1_X:100673982-100699132:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7646484375	2	546.244949	1090.47534	-0.43718	-0.00023881	0.76494	0.00041784	0.32776	0.00017904	546.2444842452054	68.075	1.0362	68.075	67.408	68.444	0					42	26	3	0	0	0	0.024263	1	8060	8060		51.335	0	1	760610	+		39666	32392	27287	27340	45115	45115					-0.06627370567821345
LFNEYNIMAE	10	Unmodified	_LFNEYNIMAE_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.195068359375	3	415.193635	1242.55907	-0.47568	-0.0001975	4.4645	0.0018536	3.9889	0.0016561	415.19536669994756	39.661	1.0433	39.438	39.073	40.116	-0.22311					65	26	4	0	0	0	0.67616	1	3365	3365		68.846	8.6792	1	2361000	+		39667	20920	27288	27341	45116	45116					-0.05250259190779616
LFNEYNIMAE	10	Unmodified	_LFNEYNIMAE_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	415.193635	1242.55907	0.68838	0.00028581	1.8923	0.00078567	2.5807	0.0010715	415.1946337876386	39.25	0.52326	39.25	39.006	39.529	0	-0.12544	-0.0026165	NaN	68.846	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457460	+		39668	20920	27288	27341							-0.05250259190779616
LFNEYNIMAE	10	Unmodified	_LFNEYNIMAE_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	415.193635	1242.55907	-0.48873	-0.00020292	4.0161	0.0016675	3.5274	0.0014645	415.1952577356373	39.345	0.49277	39.246	39.054	39.547	-0.098755	-0.1297	2.8855E-05	NaN	68.846	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446540	+		39669	20920	27288	27341							-0.05250259190779616
LFNEYNIMAE	10	Unmodified	_LFNEYNIMAE_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	415.193635	1242.55907	-0.72999	-0.00030309	3.9541	0.0016417	3.2241	0.0013386	415.19518402975353	39.58	0.66695	39.603	39.385	40.052	0.023727	0.2278	-4.8426E-05	NaN	68.846	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496260	+		39670	20920	27288	27341							-0.05250259190779616
LFNEYNIMAE	10	Unmodified	_LFNEYNIMAE_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	415.193635	1242.55907	-0.5114	-0.00021233	4.19	0.0017397	3.6786	0.0015273	415.1952962157798	39.484	0.83556	39.32	38.971	39.806	-0.16458	-0.05606	0.00024547	NaN	68.846	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2292100	+		39671	20920	27288	27341							-0.05250259190779616
LFNEYNIMAE	10	Unmodified	_LFNEYNIMAE_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	415.193635	1242.55907	-0.47568	-0.0001975	4.4645	0.0018536	3.9889	0.0016561	415.19536669994756	39.661	1.0433	39.438	39.073	40.116	-0.22311	0.062512	0.00058741	NaN	68.846	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2361000	+		39672	20920	27288	27341							-0.05250259190779616
LFNEYNIMAE	10	Unmodified	_LFNEYNIMAE_					0	0	0			REV__ENSG00000092020|ENST00000261475|PPP2R3C	REV__ENSG00000092020|ENST00000261475|PPP2R3C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	415.193635	1242.55907	0.19068	7.9169E-05	3.6213	0.0015036	3.812	0.0015827	415.1949772956059	39.625	1.0687	39.397	39.13	40.198	-0.2284	0.020879	-0.00046286	NaN	68.846	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2445300	+		39673	20920	27288	27341							-0.05250259190779616
LFNFCLPPSL	10	Unmodified	_LFNFCLPPSL_					0	0	0			REV__ENST00000534885.5_1_12:6450992-6451268:-|nuORF	REV__ENST00000534885.5_1_12:6450992-6451268:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8035888671875	2	575.801903	1149.58925	-0.21801	-0.00012553	1.8525	0.0010667	1.6345	0.00094115	575.8028178611904	70.621	0.83017	70.621	70.355	71.185	0					49	19	3	0	0	0	1.0616	1	8541	8541		37.812	4.9991	1	1916500	+		39674	34658	27289	27342	45117	45117					0.020441442650735553
LFNFFIVLYAV	11	Unmodified	_LFNFFIVLYAV_					0	0	0			REV__ENST00000546387.1_1_12:44238454-44238748:+|nuORF	REV__ENST00000546387.1_1_12:44238454-44238748:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.779541015625	3	449.256675	1344.7482	0.37425	0.00016813	-3.0655	-0.0013772	-2.6913	-0.0012091	449.5906908902872	68.119	0.34703	67.831	67.71	68.057	-0.28835					11	8	2	0	0	0	0.024731	1	8144	8144		30.569	18.933	1	102500	+		39675	23920	27290	27343	45118	45118					0.08961181164841037
LFNIKEKR	8	Unmodified	_LFNIKEKR_					0	0	0			REV__ENSG00000278053|ENST00000617633|DDX52	REV__ENSG00000278053|ENST00000617633|DDX52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.95166015625	2	524.319109	1046.62366	4.0894	0.0021441	-1.0149	-0.00053213	3.0745	0.001612	524.318450599546	17.88	0.29749	17.63	17.47	17.768	-0.25049					8	5	2	0	0	0	0.027866	1	210	210		18.324	0	1	24904	+		39676	29212	27291	27344	45119	45119					0.10221728468172842
LFNKHAAL	8	Unmodified	_LFNKHAAL_					0	0	0			REV__ENST00000546226.5_1_11:118963422-118963990:+|nuORF	REV__ENST00000546226.5_1_11:118963422-118963990:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2635498046875	2	457.266345	912.518136	-0.37978	-0.00017366	-3.9561	-0.001809	-4.3359	-0.0019826	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0133	1	10164	10164		35.201	2.3883	1	2920900	+		39677	34836	27292	27345	45120	45120					0.058378123425427475
LFNKKTLEP	9	Unmodified	_LFNKKTLEP_					0	0	0		ENST00000370765.10_1_6:56483328-56483529:-|nuORF	ENST00000370765.10_1_6:56483328-56483529:-|nuORF	ENST00000370765.10_1_6:56483328-56483529:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3171997070312	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.82115	1	11390	11390		37.812	1.3648	1	11705000			39678	12973	27293	27346	45121	45121					0.08222889028456848
LFNKKTLEP	9	Unmodified	_LFNKKTLEP_					0	0	0		ENST00000370765.10_1_6:56483328-56483529:-|nuORF	ENST00000370765.10_1_6:56483328-56483529:-|nuORF	ENST00000370765.10_1_6:56483328-56483529:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.31640625	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.72875	1	11215	11215		44.117	3.3386	1	17400000			39679	12973	27293	27346	45122	45122					0.08222889028456848
LFNKKTLEP	9	Unmodified	_LFNKKTLEP_					0	0	0		ENST00000370765.10_1_6:56483328-56483529:-|nuORF	ENST00000370765.10_1_6:56483328-56483529:-|nuORF	ENST00000370765.10_1_6:56483328-56483529:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.72494	1	11139	11139		44.377	5.6236	1	17068000			39680	12973	27293	27346	45123	45123					0.08222889028456848
LFNKLWELLYK	11	Unmodified	_LFNKLWELLYK_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.3262634277344	3	489.618384	1465.83332	-0.064366	-3.1515E-05	-1.9133	-0.00093678	-1.9777	-0.0009683	489.61765397180517	17.812	0.44841	17.605	17.414	17.863	-0.20669					19	8	3	0	0	0	0.024856	1	228	228		18.531	8.8849	1	24144			39681	2241	27294	27347	45124	45124					0.11903926630634487
LFNKWWWENWL	11	Unmodified	_LFNKWWWENWL_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|45|1|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|45|1|sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|45|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2489013671875	4	406.204219	1620.78777	-0.067345	-2.7356E-05	2.1857	0.00088785	2.1184	0.0008605	406.2050877241961	87.979	0.15585	87.841	87.784	87.94	-0.13744					6	3	2	0	0	0	0.024896	1	10710	10710		3.4087	1.8857	1	171360			39682	17846	27295	27348	45125	45125					0.0022070116826853337
LFNLLRTW	8	Unmodified	_LFNLLRTW_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7688598632812	2	531.808377	1061.6022	-0.61736	-0.00032832	0.96096	0.00051104	0.34359	0.00018273	531.8076068824294	40.312	0.7875	40.087	39.581	40.368	-0.225					40	20	3	0	0	0	0.027866	1	3502	3502		60.294	23.135	1	323260		+	39683	484	27296	27349	45126	45126					0.0738634343947524
LFNMYLIR	8	Unmodified	_LFNMYLIR_					0	0	0		HOXD9|p.T311I|1|0.45|ENSG00000128709|chr2:176124048-176124048|C/T|missense_variant	HOXD9|p.T311I|1|0.45|ENSG00000128709|chr2:176124048-176124048|C/T|missense_variant	HOXD9|p.T311I|1|0.45|ENSG00000128709|chr2:176124048-176124048|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2971801757812	2	535.296788	1068.57902	-0.35562	-0.00019036	0.4422	0.00023671	0.086588	4.635E-05	535.2968901723351	79.648	1.2514	79.498	79.195	80.446	-0.15051					89	29	5	0	0	0	0.65272	1	9522	9522		71.378	1.7503	1	4361500			39684	17744	27297	27350	45127	45127					0.047475813304799885
LFNVLVINAS	10	Unmodified	_LFNVLVINAS_					0	0	0			REV__ENSG00000152147|ENST00000281950|GEMIN6	REV__ENSG00000152147|ENST00000281950|GEMIN6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3168334960938	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0719	1	11227	11227		36.447	2.2742	1	17400000	+		39685	24819	27298	27351	45128	45128					0.08222889028456848
LFPAAITSR	9	Unmodified	_LFPAAITSR_					0	0	0		SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|5|1|sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|12|2|sense;chr15:39807258-39894532|137|21.23|0.0|15.12|-|2|TE_info:SVA_F,SVA_F_dup763,SVA,Retroposon,donor,-,39894532,39895275|GPR176,None|6;chr18:49491584-49578178|122|488.25|0.0|25.54|-|1|TE_info:SVA_F,SVA_F_dup867,SVA,Retroposon,donor,-,49578178,49579001|RPL17-C18orf32,None|4;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|4|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|13|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|4|1|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|4|1|sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|24|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|37|3|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|4|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|19|2|sense;SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|16|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|4|1|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|34|3|sense;chr12:121993709-121999716|467|38.79|0.37|6.71|+|1|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993709|None,CFAP251|4;chr12:121993889-121999716|119|12.75|0.02|9.21|+|1|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993889|None,CFAP251|4;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|34|3|sense;SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|22|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|4|1|sense;SVA_F_dup805|chr16:56739964-56741004:-|2.04439344331472|0.1539008476170439|3.73|521.0|4|1|sense;SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|22|3|sense;SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|15|2|sense;SVA_F_dup380|chr7:55220078-55221168:-|1.1418226181010516|0.0697212815142608|4.03|498.0|4|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|5|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|5|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.24237060546875	2	488.284734	974.554916	-1.0333	-0.00050456	1.0932	0.00053379	0.059868	2.9233E-05	488.2851725985634	60.893	0.6728	60.964	60.603	61.276	0.071125					27	17	2	0	0	0	0.023817	1	6935	6935		60.972	2.19	1	465720			39686	315	27299	27352	45129	45129					0.0666206416847217
LFPAGFVSFL	10	Unmodified	_LFPAGFVSFL_					0	0	0			REV__nc|ENSG00000198848|P23141-3|CES1;REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__nc|ENSG00000198848|P23141-3|CES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3026123046875	2	549.305136	1096.59572	-0.55003	-0.00030213	-3.5921	-0.0019732	-4.1422	-0.0022753	549.3031405933436	78.762	1.7147	78.762	78.363	80.078	0					126	40	6	0	0	0	0.87795	1	9732	9732		55.504	0.72789	1	13542000	+		39687	28498;32182	27300	27353	45130	45130					0.051284054880852636
LFPAGFVSFL	10	Unmodified	_LFPAGFVSFL_					0	0	0			REV__nc|ENSG00000198848|P23141-3|CES1;REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__nc|ENSG00000198848|P23141-3|CES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3031005859375	2	549.305136	1096.59572	-0.61842	-0.0003397	-3.5517	-0.001951	-4.1701	-0.0022907	549.3031625449072	78.887	1.7112	78.695	78.298	80.009	-0.1921					129	40	6	0	0	0	0.87795	1	9720	9720		55.504	9.532	1	14463000	+		39688	28498;32182	27300	27353	45131	45131					0.051284054880852636
LFPAPLPLL	9	Unmodified	_LFPAPLPLL_					0	0	0			REV__ENST00000244745.3_2_6:21594075-21594285:+|nuORF	REV__ENST00000244745.3_2_6:21594075-21594285:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.807373046875	2	490.812596	979.61064	-0.19304	-9.4746E-05	-0.39963	-0.00019614	-0.59266	-0.00029089	490.8119930430441	96.213	0.57993	96.213	95.991	96.571	0					19	13	2	0	0	0	0.024289	1	12268	12268		39.021	17.319	1	483050	+		39689	29465	27301	27354	45132	45132					0.12001897356083191
LFPAPLPLL	9	Unmodified	_LFPAPLPLL_					0	0	0			REV__ENST00000244745.3_2_6:21594075-21594285:+|nuORF	REV__ENST00000244745.3_2_6:21594075-21594285:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.812596	979.61064	0.64214	0.00031517	-3.7628	-0.0018468	-3.1207	-0.0015317	490.8105089979232	96.094	0.2438	96.096	95.911	96.154	0.0020752	-0.067172	-0.0024107	NaN	39.021	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240930	+		39690	29465	27301	27354							0.12001897356083191
LFPDQLRK	8	Unmodified	_LFPDQLRK_					0	0	0		nc|ENSG00000188089|Q3MJ16|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	nc|ENSG00000188089|Q3MJ16|PLA2G4E	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.29229736328125	2	508.798009	1015.58147	-0.13576	-6.9077E-05	-3.872	-0.0019701	-4.0078	-0.0020392	508.7959594604195	102.56	0.61121	102.43	102.1	102.72	-0.12666					27	13	3	0	0	0	1.0198	1	12740	12740		34.173	0.65696	1	244640			39691	9691	27302	27355	45133	45133					0.07429753059807354
LFPEKRSF	8	Unmodified	_LFPEKRSF_					0	0	0		ENST00000496359.5_1_10:81565841-81574436:-|nuORF;ENST00000482985.4_1_10:81420682-81426574:+|nuORF	ENST00000496359.5_1_10:81565841-81574436:-|nuORF	ENST00000496359.5_1_10:81565841-81574436:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.73388671875	2	512.284734	1022.55492	0.36942	0.00018925	-0.24112	-0.00012352	0.1283	6.5728E-05	512.2848139027715	59.349	0.52452	59.168	58.831	59.356	-0.18133					27	12	3	0	0	0	0.027866	1	6524	6524		60.972	0	1	633600			39692	15565	27303	27356	45134	45134					0.04454064168464811
LFPFGDLPK	9	Unmodified	_LFPFGDLPK_					0	0	0			REV__ENST00000371754.8_2_20:47894579-47894954:-|nuORF	REV__ENST00000371754.8_2_20:47894579-47894954:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3238525390625	2	517.289485	1032.56442	0.0096063	4.9692E-06	0.72621	0.00037566	0.73582	0.00038063	517.2874980630718	63.881	0.4302	63.629	63.408	63.838	-0.25141					20	11	3	0	0	0	0.024294	1	7471	7471		65.803	10.299	1	296630	+		39693	31176	27304	27357	45135	45135					0.04943832453977848
LFPHEPVQL	9	Unmodified	_LFPHEPVQL_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.297607421875	2	540.297842	1078.58113	0.05735	3.0986E-05	-0.27238	-0.00014717	-0.21503	-0.00011618	540.2974328978036	64.232	1.2959	64.278	63.83	65.126	0.045509					75	34	3	0	0	0	0.29158	1	7449	7449		76.774	2.7994	1	3789500	+		39694	24614	27305	27358	45136	45136					0.04498333339961391
LFPHIGRVN	9	Unmodified	_LFPHIGRVN_					0	0	0			REV__ENST00000602760.1_1_2:114647100-114647259:-|nuORF	REV__ENST00000602760.1_1_2:114647100-114647259:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8021850585938	2	526.803626	1051.5927	-0.9052	-0.00047686	-0.72869	-0.00038388	-1.6339	-0.00086074	526.8031501488817	76.288	0.8439	76.288	75.956	76.799	0					54	20	3	0	0	0	0.52323	1	9406	9406		57.811	4.4598	1	3157600	+		39695	35888	27306	27359	45137	45137					0.06896575153950835
LFPHLFTV	8	Unmodified	_LFPHLFTV_					0	0	0		ENST00000354204.10_1_2:97297202-97297256:-|nuORF	ENST00000354204.10_1_2:97297202-97297256:-|nuORF	ENST00000354204.10_1_2:97297202-97297256:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7950134277344	2	487.278921	972.543289	0.50736	0.00024723	-0.62578	-0.00030493	-0.11842	-5.7704E-05	487.27856650118486	18.74	0.79168	18.583	18.247	19.039	-0.15637					27	15	2	0	0	0	0.027866	1	341	341		44.531	0	1	138320			39696	12621	27307	27360	45138	45138					0.055918671451536284
LFPILKASDF	10	Unmodified	_LFPILKASDF_					0	0	0		ENST00000481340.1_1_X:2832668-2835863:-|nuORF	ENST00000481340.1_1_X:2832668-2835863:-|nuORF	ENST00000481340.1_1_X:2832668-2835863:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.2408447265625	2	575.828975	1149.6434	-0.68373	-0.00039371	-0.14777	-8.5092E-05	-0.8315	-0.0004788	575.8292428514511	69.366	0.45685	69.099	68.912	69.368	-0.26725					25	10	3	0	0	0	0.03519	1	8027	8027		56.721	3.3696	1	353770			39697	15227	27308	27361	45139	45139					0.07456059688252026
LFPLFCKLFL	10	Unmodified	_LFPLFCKLFL_					0	0	0			REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.2449645996094	3	414.243601	1239.70897	0.20918	8.6651E-05	3.0265	0.0012537	3.2357	0.0013404	414.24471086359637	50.966	0.83982	50.816	50.495	51.335	-0.14915					69	23	4	0	0	0	1.0508	1	5351	5351		39.253	1.6529	1	3847000	+		39698	31072	27309	27362	45140	45140					0.09870757609633074
LFPLFCKLFL	10	Unmodified	_LFPLFCKLFL_					0	0	0			REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	414.243601	1239.70897	0.64048	0.00026531	2.842	0.0011773	3.4825	0.0014426	414.2446662000623	50.752	0.94818	50.752	50.411	51.359	0	0.0014675	-0.00026716	NaN	39.253	73	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4416100	+		39699	31072	27309	27362							0.09870757609633074
LFPLFCKLFL	10	Unmodified	_LFPLFCKLFL_					0	0	0			REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	414.243601	1239.70897	0.20918	8.6651E-05	3.0265	0.0012537	3.2357	0.0013404	414.24471086359637	50.966	0.83982	50.816	50.495	51.335	-0.14915	0.065558	-3.7835E-05	NaN	39.253	69	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3847000	+		39700	31072	27309	27362							0.09870757609633074
LFPLFCKLFL	10	Unmodified	_LFPLFCKLFL_					0	0	0			REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	REV__ENST00000489000.1_1_10:124615159-124615222:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	414.243601	1239.70897	-0.29206	-0.00012098	3.5125	0.001455	3.2205	0.0013341	414.24493343521317	50.603	1.0528	50.684	50.243	51.296	0.080994	-0.067025	0.00056613	NaN	39.253	75	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3686100	+		39701	31072	27309	27362							0.09870757609633074
LFPLGSGSGT	10	Unmodified	_LFPLGSGSGT_					0	0	0			REV__ENSG00000139567|ENST00000388922|ACVRL1	REV__ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24432373046875	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	1.1307	1	12958	12958		26.693	2.1889	1	4477100	+		39702	23947	27310	27363	45141	45141					0.006137921435311
LFPPASAAGQP	11	Unmodified	_LFPPASAAGQP_					0	0	0		ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2898559570312	2	528.279649	1054.54475	-0.67779	-0.00035807	0.0098332	5.1947E-06	-0.66796	-0.00035287	528.2797196322488	104.14	1.1957	104.14	103.78	104.97	0					55	31	4	0	0	0	0.024795	1	13365	13365		51.193	5.2204	1	461510			39703	8475	27311	27364	45142	45142					0.0196545644323578
LFPPDLVIL	9	Unmodified	_LFPPDLVIL_					0	0	0		nc|ENSG00000180316|Q8N8W4-2|PNPLA1;nc|ENSG00000180316|Q8N8W4-3|PNPLA1;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1	nc|ENSG00000180316|Q8N8W4-2|PNPLA1	nc|ENSG00000180316|Q8N8W4-2|PNPLA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8150634765625	2	513.815336	1025.61612	-0.60319	-0.00030993	0.70335	0.00036139	0.10016	5.1465E-05	513.8157341182409	44.832	1.1662	44.869	44.578	45.744	0.036903					92	33	5	0	0	0	0.78069	1	4241	4241		40.573	0	1	19795000			39704	8971	27312	27365	45143	45143					0.10433576147897838
LFPPVGLSEP	10	Unmodified	_LFPPVGLSEP_					0	0	0			REV__ENST00000302424.11_1_10:104417132-104417561:+|nuORF	REV__ENST00000302424.11_1_10:104417132-104417561:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2766723632812	2	528.292225	1054.5699	-0.97465	-0.0005149	-0.74066	-0.00039128	-1.7153	-0.00090619	528.2913672323825	48.645	0.55662	48.645	48.448	49.005	0					24	15	2	0	0	0	0.03519	1	5029	5029		38.806	16.226	1	125980	+		39705	30076	27313	27366	45144	45144					0.044795112457904906
LFPRSLSEV	9	Unmodified	_LFPRSLSEV_					0	0	0			REV__ENST00000442418.5_1_1:95207954-95285609:-|nuORF	REV__ENST00000442418.5_1_1:95207954-95285609:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2971801757812	2	524.295299	1046.57605	-0.31499	-0.00016515	4.1351	0.002168	3.8202	0.0020029	524.2973676751948	100.38	1.3018	100.39	99.91	101.21	0.010117					96	32	5	0	0	0	0.29158	1	12831	12831		76.774	4.8967	1	2834100	+		39706	32194	27314	27367	45145	45145					0.05462029477325814
LFPRSLSEV	9	Unmodified	_LFPRSLSEV_					0	0	0			REV__ENST00000442418.5_1_1:95207954-95285609:-|nuORF	REV__ENST00000442418.5_1_1:95207954-95285609:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2958374023438	2	524.295299	1046.57605	0.31866	0.00016707	3.5404	0.0018562	3.8591	0.0020233	524.2970509151143	100.44	1.3456	100.44	100.01	101.36	-0.0050812					96	34	5	0	0	0	0.27161	1	12737	12737		79.451	0	1	3281700	+		39707	32194	27314	27367	45146	45146					0.05462029477325814
LFPRVDKV	8	Unmodified	_LFPRVDKV_					0	0	0			REV__ENST00000556275.5_1_14:64735521-64746848:-|nuORF	REV__ENST00000556275.5_1_14:64735521-64746848:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.25689697265625	2	487.295102	972.575651	-0.18785	-9.1536E-05	-2.518	-0.001227	-2.7059	-0.0013186	487.2937662687863	25.155	0.77719	25.235	24.641	25.418	0.08009					26	17	2	0	0	0	0.027866	1	1138	1138		30.504	0	1	465070	+		39708	35030	27315	27368	45147	45147					0.0882665454812468
LFPVLHPSR	9	Unmodified	_LFPVLHPSR_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK;ENST00000464499.5_1_16:70502828-70508568:+|nuORF	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.281005859375	2	533.313826	1064.6131	-0.85273	-0.00045477	0.73491	0.00039194	-0.11782	-6.2834E-05	533.3141630979313	54.316	0.75493	54.18	53.75	54.505	-0.13616					36	22	2	0	0	0	0.024541	1	5744	5744		31.955	18.996	1	637480			39709	6592	27316	27369	45148	45148					0.08337745813742004
LFPVLHPSR	9	Unmodified	_LFPVLHPSR_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK;ENST00000464499.5_1_16:70502828-70508568:+|nuORF	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.280517578125	2	533.313826	1064.6131	-0.46329	-0.00024708	0.17567	9.3685E-05	-0.28763	-0.00015339	533.3138478475131	54.429	0.55374	54.183	53.891	54.445	-0.2453					32	16	2	0	0	0	0.024477	1	5767	5767		44.117	12.162	1	650130			39710	6592	27316	27369	45149	45149					0.08337745813742004
LFPVLHPSR	9	Unmodified	_LFPVLHPSR_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK;ENST00000464499.5_1_16:70502828-70508568:+|nuORF	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2802124023438	2	533.313826	1064.6131	0.045851	2.4453E-05	-0.34317	-0.00018302	-0.29732	-0.00015857	533.3135271698333	54.31	0.67868	54.112	53.798	54.477	-0.19739					32	18	2	0	0	0	0.024506	1	5743	5743		38.806	5.2906	1	538110			39711	6592	27316	27369	45150	45150					0.08337745813742004
LFPVMQVD	8	Unmodified	_LFPVMQVD_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.76678466796875	2	474.746596	947.478639	0.73572	0.00034928	-4.2167	-0.0020018	-3.4809	-0.0016526	474.74433917212514	54.521	0.55283	54.619	54.328	54.881	0.098015					26	15	2	0	0	0	0.027866	1	5933	5933		35.201	5.3592	1	298440			39712	5361	27317	27370	45151	45151					0.002799242768219301
LFPVMQVD	8	Unmodified	_LFPVMQVD_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	474.746596	947.478639	0.32441	0.00015401	-4.1996	-0.0019937	-3.8752	-0.0018397	474.74452183041296	54.641	0.58675	54.641	54.321	54.908	0	-0.037893	0.0026587	NaN	35.201	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262340			39713	5361	27317	27370							0.002799242768219301
LFPVMQVD	8	Unmodified	_LFPVMQVD_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.746596	947.478639	-0.17488	-8.3023E-05	-7.2593	-0.0034463	-7.4342	-0.0035294	474.74291635498366	54.851	0.45211	54.705	54.459	54.911	-0.14609	0.026552	-0.00024651	NaN	35.201	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242110			39714	5361	27317	27370							0.002799242768219301
LFPVMQVD	8	Unmodified	_LFPVMQVD_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	474.746596	947.478639	-0.051146	-2.4281E-05	-7.2197	-0.0034275	-7.2708	-0.0034518	474.7429472636467	55.004	0.49957	54.774	54.565	55.065	-0.23087	0.094888	-0.00020884	NaN	35.201	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328530			39715	5361	27317	27370							0.002799242768219301
LFPVMQVD	8	Unmodified	_LFPVMQVD_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	474.746596	947.478639	0.48325	0.00022942	-8.2902	-0.0039357	-7.8069	-0.0037063	474.7425901921393	54.924	0.47384	54.718	54.502	54.976	-0.20613	0.038951	-0.0012253	NaN	35.201	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421310			39716	5361	27317	27370							0.002799242768219301
LFPWSSPFCS	10	Unmodified	_LFPWSSPFCS_					0	0	0			REV__ENST00000369851.5_1_1:110135836-110135917:+|nuORF	REV__ENST00000369851.5_1_1:110135836-110135917:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2822265625	2	585.76806	1169.52157	-2.6824	-0.0015713	2.0833	0.0012203	-0.5991	-0.00035093	585.7689678930064	52.025	1.4972	51.756	50.974	52.471	-0.26904					56	39	3	0	0	0	0.03519	1	5269	5269		53.351	7.3792	1	572670	+		39717	31105	27318	27371	45152	45152					-0.05641305665744767
LFPWSSPFCS	10	Unmodified	_LFPWSSPFCS_					0	0	0			REV__ENST00000369851.5_1_1:110135836-110135917:+|nuORF	REV__ENST00000369851.5_1_1:110135836-110135917:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.76806	1169.52157	-0.091077	-5.335E-05	-1.0313	-0.00060408	-1.1223	-0.00065743	585.7674271633786	51.871	1.1742	51.687	51.099	52.273	-0.18404	-0.013083	-0.0015255	NaN	53.351	43	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731500	+		39718	31105	27318	27371							-0.05641305665744767
LFQALIDGF	9	Unmodified	_LFQALIDGF_					0	0	0		ENSG00000110395|ENST00000264033|CBL	ENSG00000110395|ENST00000264033|CBL	ENSG00000110395|ENST00000264033|CBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.327392578125	2	512.279118	1022.54368	0.8197	0.00041992	1.413	0.00072387	2.2328	0.0011438	512.2794854517961	96.79	1.4067	96.667	96.147	97.554	-0.12305					53	31	2	0	0	0	0.024535	1	11922	11922		7.1934	0	1	52670			39719	3039	27319	27372	45153	45153					0.03331242074330021
LFQDRFFL	8	Unmodified	_LFQDRFFL_					0	0	0		CON__P17697	CON__P17697	CON__P17697	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.796630859375	2	543.292559	1084.57057	-1.1452	-0.00062217	3.8055	0.0020675	2.6604	0.0014454	543.2946847285513	72.382	0.67015	72.184	71.869	72.539	-0.19811					27	15	2	0	0	0	0.93274	1	8461	8461		47.916	1.9434	1	2526400		+	39720	523	27320	27373	45154	45154					0.031663506855238666
LFQELQDL	8	Unmodified	_LFQELQDL_					0	0	0		ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant	ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.8106689453125	2	503.266207	1004.51786	-0.29882	-0.00015039	2.3909	0.0012033	2.0921	0.0010529	503.2680958062781	69.532	0.90096	69.547	69.133	70.034	0.015129					33	22	2	0	0	0	0.027866	1	8299	8299		45.952	5.3793	1	301020			39721	126	27321	27374	45155	45155					0.01578347832048621
LFQFSEIPV	9	Unmodified	_LFQFSEIPV_					0	0	0		ENST00000503074.1_1_5:35700583-35709228:+|nuORF	ENST00000503074.1_1_5:35700583-35709228:+|nuORF	ENST00000503074.1_1_5:35700583-35709228:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7952270507812	2	540.292225	1078.5699	-0.95634	-0.0005167	-2.381	-0.0012864	-3.3374	-0.0018032	540.2898959399681	81.216	0.79765	81.216	80.667	81.464	0					26	19	2	0	0	0	0.023239	1	10110	10110		74.255	2.3776	1	235920			39722	15686	27322	27375	45156	45156					0.033755112457811265
LFQFSEIPV	9	Unmodified	_LFQFSEIPV_					0	0	0		ENST00000503074.1_1_5:35700583-35709228:+|nuORF	ENST00000503074.1_1_5:35700583-35709228:+|nuORF	ENST00000503074.1_1_5:35700583-35709228:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.794921875	2	540.292225	1078.5699	-1.3105	-0.00070808	3.0811	0.0016647	1.7706	0.00095663	540.2932284459677	81.475	0.44756	81.344	81.055	81.502	-0.13075					23	10	3	0	0	0	0.023837	1	10099	10099		74.255	10.949	1	198030			39723	15686	27322	27375	45157	45157					0.033755112457811265
LFQGSSDGVEV	11	Unmodified	_LFQGSSDGVEV_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000468748.5_1_3:183855785-183858017:+|nuORF;ENST00000479833.1_1_3:183855956-183859823:+|nuORF;ENST00000491144.5_1_3:183855641-183858240:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.27734375	2	569.274761	1136.53497	1.3076	0.00074441	2.4515	0.0013956	3.7592	0.00214	569.275995448091	82.585	1.8247	82.475	81.881	83.706	-0.11006					111	42	4	0	0	0	0.51994	1	10296	10296		75.043	0.78827	1	1661300			39724	5794	27323	27376	45158	45158					-0.02783776352816858
LFQHEDLI	8	Unmodified	_LFQHEDLI_					0	0	0		nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.76434326171875	2	507.766374	1013.5182	-0.62008	-0.00031486	-4.055	-0.002059	-4.6751	-0.0023739	507.76434235861836	22.221	1.2893	22.221	21.916	23.206	0					48	27	2	0	0	0	0.71833	1	746	746		65.803	0.33779	1	6504000			39725	4090	27324	27377	45159	45159					0.01197767551900597
LFQIWPVY	8	Unmodified	_LFQIWPVY_					0	0	0		ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7879638671875	2	533.292028	1064.5695	-0.10323	-5.5052E-05	-1.8671	-0.0009957	-1.9703	-0.0010508	533.2906555786496	74.857	0.7149	74.598	74.028	74.743	-0.25887					21	16	2	0	0	0	0.027866	1	9066	9066		57.453	6.1172	1	198200			39726	10926	27325	27378	45160	45160					0.03980136316590688
LFQKHKLSV	9	Unmodified	_LFQKHKLSV_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.3348999023438	2	550.334759	1098.65496	0.0098946	5.4453E-06	-0.65511	-0.00036053	-0.64521	-0.00035508	550.334120522643	74.689	0.63032	74.413	74.132	74.763	-0.27573					28	14	3	0	0	0	0.39228	2	8800	8800;8819		66.429	18.004	1	1290200			39727	6330	27326	27379	45161;45162	45161					0.10958301502250833
LFQKHKLSV	9	Unmodified	_LFQKHKLSV_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	550.334759	1098.65496	0.10517	5.7879E-05	-0.61742	-0.00033979	-0.51225	-0.00028191	550.3342510766763	74.645	0.59049	74.382	74.142	74.732	-0.26326	0.019483	6.5373E-05	NaN	66.429	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987650			39728	6330	27326	27379							0.10958301502250833
LFQKIEKRES	10	Unmodified	_LFQKIEKRES_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|18|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	639.36328125	2	639.364244	1276.71394	-1.3694	-0.00087557	-0.18329	-0.00011719	-1.5527	-0.00099276	639.3639435468325	110.2	0.52441	110.06	109.85	110.37	-0.13983					60	20	4	0	0	0	1.1217	1	13528	13528		21.96	1.9631	1	470490			39729	17897	27327	27380	45163	45163					0.08664733005957714
LFQKKVVA	8	Unmodified	_LFQKKVVA_					0	0	0		nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2;nc|ENSG00000138346|P51530-2|DNA2;nc|ENSG00000138346|P51530-3|DNA2	nc|ENSG00000138346|P51530-4|DNA2	nc|ENSG00000138346|P51530-4|DNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.7816162109375	2	466.80002	931.585488	-0.576	-0.00026888	-0.82764	-0.00038634	-1.4036	-0.00065522	466.79963420553275	29.599	0.24763	29.427	29.242	29.49	-0.17258					7	5	2	0	0	0	0.027866	1	1799	1799		83.287	3.8362	1	42275			39730	5228	27328	27381	45164	45164					0.11695842553513103
LFQLLQLRVI	10	Unmodified	_LFQLLQLRVI_					0	0	0			REV__ENST00000358744.3_1_19:38077586-38085658:-|nuORF	REV__ENST00000358744.3_1_19:38077586-38085658:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.9000854492188	2	621.900266	1241.78598	-1.8282	-0.001137	2.8398	0.0017661	1.0115	0.00062907	621.901779649968	105.46	0.42779	105.33	105.07	105.5	-0.13099					28	11	3	0	0	0	1.1217	1	13113	13113		21.96	7.095	1	1094000	+		39731	30864	27329	27382	45165	45165					0.1747569215031035
LFQNSCVCT	9	Unmodified	_LFQNSCVCT_					0	0	0			REV__nc|ENSG00000112294|P51649-2|ALDH5A1	REV__nc|ENSG00000112294|P51649-2|ALDH5A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7641296386719	2	507.722795	1013.43104	-0.62628	-0.00031798	-1.8385	-0.00093347	-2.4648	-0.0012514	507.7218275919104	22.268	0.23204	22.268	22.106	22.338	0					6	4	2	0	0	0	0.024263	1	755	755		71.296	10.324	1	16243	+		39732	36570	27330	27383	45166	45166					-0.07514097985676926
LFQQNIAQ	8	Unmodified	_LFQQNIAQ_					0	0	0			REV__ENSG00000119042|ENST00000417098|SATB2;REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	REV__ENSG00000119042|ENST00000417098|SATB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2768859863281	2	481.258717	960.50288	-0.027062	-1.3024E-05	3.8596	0.0018574	3.8325	0.0018444	481.26033029437906	50.522	1.1321	50.522	50.116	51.248	0					69	32	3	0	0	0	0.027866	1	5404	5404		45.952	6.6991	1	2132300	+		39733	22438;33506	27331	27384	45167	45167					0.02104900754704886
LFQQSLITPV	10	Unmodified	_LFQQSLITPV_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2792358398438	2	573.331882	1144.64921	0.13984	8.0173E-05	-3.8265	-0.0021938	-3.6866	-0.0021137	573.3307733526901	77.741	0.29954	77.479	77.313	77.612	-0.26202					12	6	3	0	0	0	0.03519	1	9229	9229		27.882	10.517	1	170560			39734	5206	27332	27385	45168	45168					0.08267158199919322
LFQQSLITPV	10	Unmodified	_LFQQSLITPV_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	573.331882	1144.64921	-0.62398	-0.00035775	-7.6695	-0.0043972	-8.2935	-0.0047549	573.3272431911643	77.231	0.75198	77.231	77.04	77.792	0	-0.10085	-0.0011647	NaN	14.865	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150010			39735	5206	27332	27385							0.08267158199919322
LFQQSLITPV	10	Unmodified	_LFQQSLITPV_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	573.331882	1144.64921	-0.65508	-0.00037558	-7.3995	-0.0042424	-8.0546	-0.0046179	573.3273608167663	77.272	0.67349	77.286	77.104	77.777	0.013504	-0.046164	-0.00085502	NaN	14.865	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90679			39736	5206	27332	27385							0.08267158199919322
LFQVCLKTV	9	Unmodified	_LFQVCLKTV_					0	0	0			REV__ENSG00000197705|ENST00000359358|KLHL14	REV__ENSG00000197705|ENST00000359358|KLHL14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7767944335938	2	525.804445	1049.59434	-0.60763	-0.00031949	-3.6026	-0.0018943	-4.2102	-0.0022138	525.8021747250959	49.009	0.63845	49.009	48.761	49.399	0					33	16	3	0	0	0	0.024484	1	5090	5090		45.972	25.025	1	903480	+		39737	28338	27333	27386	45169	45169					0.07152448127658317
LFQVVDVTW	9	Unmodified	_LFQVVDVTW_					0	0	0		ENST00000496726.5_1_3:25760953-25775482:-|nuORF	ENST00000496726.5_1_3:25760953-25775482:-|nuORF	ENST00000496726.5_1_3:25760953-25775482:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7971801757812	2	553.797675	1105.5808	0.26161	0.00014488	-0.57645	-0.00031924	-0.31484	-0.00017436	553.7972528393377	80.611	1.7813	80.405	80.092	81.873	-0.20633					102	42	4	0	0	0	0.20967	1	9671	9671		87.754	14.875	1	2756800			39738	15573	27334	27387	45170	45170					0.03222913620084
LFQVVDVTW	9	Unmodified	_LFQVVDVTW_					0	0	0		ENST00000496726.5_1_3:25760953-25775482:-|nuORF	ENST00000496726.5_1_3:25760953-25775482:-|nuORF	ENST00000496726.5_1_3:25760953-25775482:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.797675	1105.5808	-0.92711	-0.00051343	0.30364	0.00016816	-0.62346	-0.00034527	553.7977328041773	80.564	0.37727	80.585	80.316	80.693	0.021439	0.14747	0.00046915	NaN	87.754	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52988			39739	15573	27334	27387							0.03222913620084
LFQWQRLN	8	Unmodified	_LFQWQRLN_					0	0	0			REV__ENST00000407004.7_2_19:10795127-10795319:+|nuORF	REV__ENST00000407004.7_2_19:10795127-10795319:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7847900390625	2	552.801083	1103.58761	0.010379	5.7378E-06	-3.7696	-0.0020838	-3.7592	-0.0020781	552.7991097692699	75.818	0.11238	75.642	75.584	75.696	-0.17548					4	2	2	0	0	0	0.027866	1	8974	8974		31.955	11.958	1	84023	+		39740	31931	27335	27388	45171	45171					0.03996271291339326
LFRDETLTYA	10	Unmodified	_LFRDETLTYA_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	615.2833862304688	2	614.814053	1227.61355	-0.58427	-0.00035922	4.1375	0.0025438	3.5532	0.0021846	614.8163008934157	55.117	0.41763	54.887	54.711	55.128	-0.23087					16	11	2	0	0	0	0.03519	1	5897	5897		49.442	5.3247	1	184530			39741	5397	27336	27389	45172	45172					0.008850759523056695
LFRDIQGLPRH	11	Unmodified	_LFRDIQGLPRH_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2303466796875	3	451.257961	1350.75205	-0.43712	-0.00019726	-2.7161	-0.0012257	-3.1532	-0.0014229	451.25674070739075	26.569	0.42653	26.65	26.456	26.883	0.081293					16	9	2	0	0	0	0.024792	1	1331	1331		18.531	2.0012	1	102770			39742	982	27337	27390	45173	45173					0.0907066371125893
LFRFLVSILM	10	Unmodified	_LFRFLVSILM_					0	0	0		ENST00000304858.6_1_5:132406177-132408961:+|nuORF	ENST00000304858.6_1_5:132406177-132408961:+|nuORF	ENST00000304858.6_1_5:132406177-132408961:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8695068359375	2	619.87012	1237.72569	-0.47108	-0.00029201	-0.59365	-0.00036799	-1.0647	-0.00066	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.1265	1	11802	11802		24.519	0.99649	1	4765600			39743	11981	27338	27391	45174	45174					0.11633258495567134
LFRGILQMVK	10	Unmodified	_LFRGILQMVK_					0	0	0		ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENST00000305699.15_1_16:89806300-89831390:-|nuORF	ENST00000305699.15_1_16:89806300-89831390:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	403.2071838378906	3	402.246005	1203.71618	2.0082	0.0008078	1.3211	0.00053142	3.3293	0.0013392	402.24643014809305	35.364	0.55344	35.408	35.229	35.782	0.044056					22	13	2	0	0	0	0.03519	1	2635	2635		25.126	12.693	1	77434			39744	11991	27339	27392	45175	45175					0.12247490210052092
LFRGLSEEP	9	Unmodified	_LFRGLSEEP_					0	0	0			REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ	REV__nc|ENSG00000007541|Q9BRB3-3|PIGQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2998046875	2	524.277106	1046.53966	-0.35476	-0.00018599	3.9722	0.0020825	3.6174	0.0018965	524.2790529540665	76.754	0.86565	76.754	76.473	77.339	0					36	20	2	0	0	0	0.024405	1	9462	9462		27.882	1.1893	1	884270	+		39745	19865	27340	27393	45176	45176					0.01825152580613576
LFRHCFET	8	Unmodified	_LFRHCFET_					0	0	0			REV__ENSG00000185624|ENST00000331483|P4HB	REV__ENSG00000185624|ENST00000331483|P4HB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.294189453125	2	526.752744	1051.49094	-0.083525	-4.3997E-05	2.6537	0.0013978	2.5702	0.0013538	526.7540308244901	52.571	0.55813	52.381	51.993	52.551	-0.18982					22	13	2	0	0	0	0.027866	1	5423	5423		52.299	20.344	1	264880	+		39746	27776	27341	27394	45177	45177					-0.032750392601201384
LFRHKMVS	8	Unmodified	_LFRHKMVS_					0	0	0			REV__nc|ENSG00000120053|P17174-2|GOT1	REV__nc|ENSG00000120053|P17174-2|GOT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2682189941406	2	509.286754	1016.55896	-0.20446	-0.00010413	-0.62379	-0.00031769	-0.82825	-0.00042181	509.7894069503722	62.178	0.27827	61.964	61.813	62.091	-0.21375					9	6	2	0	0	0	0.027866	1	6984	6984		40.573	0	1	99007	+		39747	22510	27342	27395	45178	45178					0.051338303905367866
LFRIGASTL	9	Unmodified	_LFRIGASTL_					0	0	0		ENSG00000023697|ENST00000428559|DERA	ENSG00000023697|ENST00000428559|DERA	ENSG00000023697|ENST00000428559|DERA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.29180908203125	2	489.292559	976.570566	-0.4915	-0.00024049	1.3142	0.00064305	0.82275	0.00040256	489.29298572711707	66.192	0.71687	66.222	65.89	66.607	0.030106					47	21	3	0	0	0	0.23085	1	7795	7795		84.916	19.112	1	5435400			39748	975	27343	27396	45179	45179					0.0813435068552053
LFRKEQLL	8	Unmodified	_LFRKEQLL_					0	0	0			REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8214111328125	2	523.821484	1045.62842	-1.0109	-0.00052951	0.13312	6.9732E-05	-0.87774	-0.00045978	523.8215921563113	48.547	1.6941	48.271	47.63	49.324	-0.27598					132	45	4	0	0	0	0.59392	1	4797	4797		76.847	5.4687	1	19150000	+		39749	21089	27344	27397	45180	45180					0.1074261261094307
LFRKRRPS	8	Unmodified	_LFRKRRPS_					0	0	0			REV__ENSG00000023171|ENST00000635736|GRAMD1B	REV__ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2779541015625	2	530.330342	1058.64613	-0.85409	-0.00045295	3.0225	0.0016029	2.1684	0.00115	530.3318453440924	69.055	0.63216	69.055	68.641	69.273	0					39	16	3	0	0	0	0.027866	1	8328	8328		47.916	3.3845	1	468770	+		39750	20006	27345	27398	45181	45181					0.11915372656449108
LFRLEAIL	8	Unmodified	_LFRLEAIL_					0	0	0		ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENST00000468592.5_1_2:172300063-172325523:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79229736328125	2	487.805303	973.596052	-0.4934	-0.00024068	0.47186	0.00023018	-0.021537	-1.0506E-05	487.8053406671392	79.122	1.2959	78.949	78.484	79.78	-0.17226					67	30	3	0	0	0	0.027866	1	9719	9719		57.811	4.4598	1	449060			39751	14877	27346	27399	45182	45182					0.10819825207954636
LFRPSHLTN	9	Unmodified	_LFRPSHLTN_					0	0	0		ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7973022460938	2	542.79854	1083.58253	0.017495	9.496E-06	-1.625	-0.00088203	-1.6075	-0.00087253	542.7975197223367	105.7	0.89027	105.7	105.36	106.25	0					65	31	3	0	0	0	0.83071	1	13576	13576		37.159	2.9866	1	191290			39752	7641	27347	27400	45183	45183					0.04407967428710435
LFRQGREVS	9	Unmodified	_LFRQGREVS_					0	0	0			REV__ENSG00000146109|ENST00000274849|ABT1	REV__ENSG00000146109|ENST00000274849|ABT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2763671875	2	546.301447	1090.58834	0.7424	0.00040558	-0.521	-0.00028462	0.22141	0.00012096	546.3009833495898	77.681	0.17005	77.439	77.32	77.49	-0.24233					5	3	2	0	0	0	0.024381	1	9253	9253		55.504	0	1	47515	+		39753	24461	27348	27401	45184	45184					0.046670659403844184
LFRRIDESTG	10	Unmodified	_LFRRIDESTG_					0	0	0			REV__ENST00000248901.10_1_22:37710662-37711253:+|nuORF	REV__ENST00000248901.10_1_22:37710662-37711253:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.2989501953125	2	597.317294	1192.62004	-0.52029	-0.00031078	-1.5731	-0.00093962	-2.0934	-0.0012504	597.3161083042327	69.836	0.45868	69.585	69.358	69.817	-0.25063					22	10	3	0	0	0	0.03519	1	8091	8091		37.812	0	1	92843	+		39754	29485	27349	27402	45185	45185					0.03143013903627434
LFRRPALS	8	Unmodified	_LFRRPALS_					0	0	0			REV__ENST00000358268.6_2_21:40801131-40817638:-|nuORF	REV__ENST00000358268.6_2_21:40801131-40817638:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7756652832031	2	480.292894	958.571235	-0.46302	-0.00022238	3.1391	0.0015077	2.6761	0.0012853	480.2928125185961	79.876	0.54326	79.897	79.645	80.189	0.021439					21	12	3	0	0	0	0.027866	1	9818	9818		45.952	5.3793	1	78261	+		39755	30852	27350	27403	45186	45186					0.0902919012522716
LFRSVLQEV	9	Unmodified	_LFRSVLQEV_					0	0	0		ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8173828125	2	545.816399	1089.61824	0.054444	2.9716E-05	-1.1009	-0.0006009	-1.0465	-0.00057118	545.8158503193108	67.186	1.6642	66.938	66.65	68.314	-0.24839					130	41	5	0	0	0	0.34489	1	7800	7800		69.628	2.134	1	43259000			39756	10151	27351	27404	45187	45187					0.07702004885709357
LFRSVLQEV	9	Unmodified	_LFRSVLQEV_					0	0	0		ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.817138671875	2	545.816399	1089.61824	-0.55171	-0.00030113	-0.40058	-0.00021864	-0.95229	-0.00051977	545.8162202685157	67.143	1.6595	66.919	66.626	68.285	-0.22374					130	42	5	0	0	0	0.19099	1	7788	7788		90.37	16.115	1	32880000			39757	10151	27351	27404	45188	45188					0.07702004885709357
LFRSVLQEV	9	Unmodified	_LFRSVLQEV_					0	0	0		ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.816650390625	2	545.816399	1089.61824	-0.88605	-0.00048362	0.016009	8.7378E-06	-0.87004	-0.00047488	545.8164533022599	67.097	1.4448	66.851	66.618	68.063	-0.24517					127	36	5	0	0	0	0.22902	1	7770	7770		85.161	12.282	1	38881000			39758	10151	27351	27404	45189	45189					0.07702004885709357
LFRVKLNH	8	Unmodified	_LFRVKLNH_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8150634765625	2	513.813993	1025.61343	-0.88782	-0.00045617	3.4916	0.001794	2.6038	0.0013379	513.8158316785673	44.808	1.3324	44.808	44.485	45.818	0					110	38	5	0	0	0	1.0338	1	4291	4291		31.955	0.42505	1	21263000	+		39759	26128	27352	27405	45190	45190					0.10165165533612708
LFSARLLGSV	10	Unmodified	_LFSARLLGSV_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.81640625	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.1266	1	10762	10762		29.17	1.2878	1	4853400	+		39760	28953	27353	27406	45191	45191					0.09498308748334239
LFSDPATASL	10	Unmodified	_LFSDPATASL_					0	0	0		ENST00000257663.3_1_7:77423607-77427674:-|nuORF	ENST00000257663.3_1_7:77423607-77427674:-|nuORF	ENST00000257663.3_1_7:77423607-77427674:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2635498046875	2	511.263665	1020.51278	-0.1402	-7.1681E-05	0.20607	0.00010536	0.065865	3.3674E-05	511.2635327103733	74.894	1.0093	74.631	74.186	75.195	-0.26326					49	23	3	0	0	0	0.67706	1	8853	8853		68.787	12.066	1	1297800			39761	11407	27354	27407	45192	45192					0.0033404396940568404
LFSEPTKTT	9	Unmodified	_LFSEPTKTT_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2708740234375	2	512.27149	1022.52843	-1.3044	-0.00066821	0.14151	7.249E-05	-1.1629	-0.00059572	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.92825	1	13273	13273		30.504	1.3541	1	5095800			39762	6441	27355	27408	45193	45193					0.01806330486465413
LFSFCLPLPL	10	Unmodified	_LFSFCLPLPL_					0	0	0		ENST00000492816.6_1_2:216257645-216258011:-|nuORF	ENST00000492816.6_1_2:216257645-216258011:-|nuORF	ENST00000492816.6_1_2:216257645-216258011:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	576.3087768554688	2	575.322471	1148.63039	0.24025	0.00013822	2.6244	0.0015099	2.8646	0.0016481	575.8256325132747	74.069	0.87642	73.802	73.65	74.526	-0.26696					34	20	2	0	0	0	0.03519	1	9109	9109		30.504	0	1	510190			39763	15491	27356	27409	45194	45194					0.06201905304533284
LFSGDELSSI	10	Unmodified	_LFSGDELSSI_					0	0	0		ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA;nc|ENSG00000155719|Q7RTW8-3|OTOA;ENST00000563506.1_1_16:21742071-21771858:+|nuORF;nc|ENSG00000155719|Q7RTW8-2|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA	ENSG00000155719|ENST00000646100|OTOA	ENSG00000155719|ENST00000646100|OTOA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2697143554688	2	534.266404	1066.51826	-0.98458	-0.00052603	3.2636	0.0017436	2.279	0.0012176	535.2729991515097	83.178	0.34418	83.178	82.922	83.266	0					16	7	3	0	0	0	0.03519	1	10403	10403		44.117	8.4985	1	95847			39764	6483	27357	27410	45195	45195					-0.012342772387455625
LFSGQPLII	9	Unmodified	_LFSGQPLII_					0	0	0		nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-7|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.29754638671875	2	494.29731	986.580068	0.91876	0.00045414	-0.80753	-0.00039916	0.11124	5.4984E-05	494.2968091058143	84.883	0.95119	84.883	84.463	85.414	0					63	22	4	0	0	0	0.4752	1	10635	10635		60.972	3.1607	1	3215800			39765	18610	27358	27411	45196	45196					0.08624118971033568
LFSHFRNI	8	Unmodified	_LFSHFRNI_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2655639648438	2	517.282526	1032.5505	0.46914	0.00024268	0.83194	0.00043035	1.3011	0.00067302	517.2828573753604	57.481	0.15379	57.306	57.229	57.383	-0.1749					5	3	2	0	0	0	0.027866	1	6435	6435		31.955	0	1	36457	+		39766	23480	27359	27412	45197	45197					0.03552599745557927
LFSILCLGAM	10	Unmodified	_LFSILCLGAM_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2530517578125	2	534.285031	1066.55551	-0.38285	-0.00020455	4.0018	0.0021381	3.6189	0.0019335	534.2881461139758	106.35	0.65851	106.35	106.12	106.78	0.00014496					31	23	2	0	0	0	0.03519	1	13594	13594		45.952	3.4775	1	209000	+		39767	22971	27360	27413	45198	45198					0.024893995016327608
LFSIRVVGLS	10	Unmodified	_LFSIRVVGLS_					0	0	0		nc|ENSG00000154914|Q70EL4-3|USP43;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43	nc|ENSG00000154914|Q70EL4-3|USP43	nc|ENSG00000154914|Q70EL4-3|USP43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7297973632812	2	545.834591	1089.65463	-1.0012	-0.00054646	0.55032	0.00030038	-0.45084	-0.00024608	545.8348725928033	61.623	0.60388	61.445	61.162	61.766	-0.17781					23	14	2	0	0	0	0.03519	1	6870	6870		26.693	0	1	393400			39768	6442	27361	27414	45199	45199					0.11338881782421595
LFSKSRVRATT	11	Unmodified	_LFSKSRVRATT_					0	0	0			REV__ENSG00000120907|ENST00000380573|ADRA1A	REV__ENSG00000120907|ENST00000380573|ADRA1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3684692382812	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	1.0392	1	11791	11791		28.081	2.5074	1	3181800	+		39769	22568	27362	27415	45200	45200					0.1033955510006308
LFSKSRVRATT	11	Unmodified	_LFSKSRVRATT_					0	0	0			REV__ENSG00000120907|ENST00000380573|ADRA1A	REV__ENSG00000120907|ENST00000380573|ADRA1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3695068359375	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.9728	1	12044	12044		42.864	4.1107	1	9245900	+		39770	22568	27362	27415	45201	45201					0.1033955510006308
LFSKVNCKL	9	Unmodified	_LFSKVNCKL_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2387084960938	2	526.30207	1050.58959	-0.50807	-0.0002674	-0.51452	-0.00027079	-1.0226	-0.00053819	526.8031085813084	56.049	0.28819	56.147	56.033	56.321	0.097897					11	7	2	0	0	0	0.024427	1	6163	6163		51.335	14.176	1	187220	+		39771	19855	27363	27416	45202	45202					0.06631563984910827
LFSLIVGLL	9	Unmodified	_LFSLIVGLL_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant;ENST00000471238.5_1_7:75583310-75608939:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.81829833984375	2	487.817879	973.621205	-0.064843	-3.1631E-05	1.5907	0.00077596	1.5258	0.00074433	487.8178408211123	103.85	1.4045	103.85	103.44	104.84	0.0031357					55	38	2	0	0	0	0.90698	1	13290	13290		31.955	0	1	163290			39772	4269	27364	27417	45203	45203					0.13333880010532084
LFSLLTAS	8	Unmodified	_LFSLLTAS_					0	0	0			REV__ENST00000599799.1_1_19:35820106-35820811:+|nuORF	REV__ENST00000599799.1_1_19:35820106-35820811:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2460021972656	2	426.247286	850.48002	0.090279	3.8481E-05	-2.9325	-0.00125	-2.8422	-0.0012115	426.2459398709793	86.867	2.4687	86.822	85.947	88.415	-0.045105					139	58	5	0	0	0	0.95417	1	10858	10858		44.531	0	1	11102000	+		39773	35832	27365	27418	45204	45204					0.048798816372254805
LFSLMVVSF	9	Unmodified	_LFSLMVVSF_					0	0	0		chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|9	chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|9	chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7844848632812	2	521.785721	1041.55689	-0.6279	-0.00032763	-2.647	-0.0013812	-3.2749	-0.0017088	521.7841437229965	69.978	0.54789	69.711	69.451	69.999	-0.26725					37	12	4	0	0	0	0.40179	1	8148	8148		65.803	1.5959	1	1764400			39774	296	27366	27419	45205	45205					0.03777356862065062
LFSLQDLLL	9	Unmodified	_LFSLQDLLL_					0	0	0		ENST00000561144.1_1_15:60740147-60741119:-|nuORF;ENSG00000128915|ENST00000261520|ICE2	ENST00000561144.1_1_15:60740147-60741119:-|nuORF	ENST00000561144.1_1_15:60740147-60741119:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2949829101562	2	531.3157	1060.61685	-0.4818	-0.00025599	-0.069224	-3.678E-05	-0.55102	-0.00029277	531.3155611541438	100.93	0.68564	100.94	100.65	101.34	0.0090332					26	15	2	0	0	0	0.021513	1	12910	12910		116.9	8.8161	1	223510			39775	4320	27367	27420	45206	45206					0.0889637079694694
LFSLVSVFH	9	Unmodified	_LFSLVSVFH_					0	0	0			REV__ENSG00000188340|ENST00000641131|OR6N2	REV__ENSG00000188340|ENST00000641131|OR6N2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.95166015625	2	524.794935	1047.57532	4.1791	0.0021932	-4.0258	-0.0021127	0.15332	8.0463E-05	524.7922161441228	17.825	0.2481	17.575	17.421	17.669	-0.25049					6	4	2	0	0	0	0.024535	1	210	210		25.45	4.5032	1	25990	+		39776	28032	27368	27421	45207	45207					0.05343234828274035
LFSLVSVFH	9	Unmodified	_LFSLVSVFH_					0	0	0			REV__ENSG00000188340|ENST00000641131|OR6N2	REV__ENSG00000188340|ENST00000641131|OR6N2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.794935	1047.57532	0.11039	5.7935E-05	-6.932	-0.0036379	-6.8216	-0.0035799	524.7913463323363	17.998	0.29404	17.866	17.712	18.006	-0.13148	0.14573	-0.0012415	NaN	25.45	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7197.9	+		39777	28032	27368	27421							0.05343234828274035
LFSMIPQNLTN	11	Unmodified	_LFSMIPQNLTN_					0	0	0		ENST00000324262.8_1_18:72188123-72188333:+|nuORF	ENST00000324262.8_1_18:72188123-72188333:+|nuORF	ENST00000324262.8_1_18:72188123-72188333:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	639.3399047851562	2	639.331556	1276.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.65	1	103.65	103.15	104.15	0								0	0	0	1.237	1	13298	13298		29.17	1.0886	1				39778	12252	27369	27422	45208	45208					0.02129995488598979
LFSPYLDVL	9	Unmodified	_LFSPYLDVL_					0	0	0			REV__ENSG00000131389|ENST00000622186|SLC6A6	REV__ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7960815429688	2	533.794601	1065.57465	-1.5754	-0.00084095	0.69841	0.00037281	-0.87702	-0.00046815	533.7946877989222	91.336	1.9135	91.336	91.011	92.924	0					94	45	4	0	0	0	0.08613	1	11584	11584		115.46	12.686	1	3598600	+		39779	23207	27370	27423	45209	45209					0.044483953885674055
LFSQTPVVV	9	Unmodified	_LFSQTPVVV_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2868957519531	2	495.286943	988.559333	-0.44535	-0.00022057	0.77243	0.00038258	0.32709	0.000162	495.28721037586297	67.415	1.0301	67.177	66.838	67.868	-0.23814					66	24	4	0	0	0	0.72875	1	7789	7789		44.117	0	1	5072900			39780	3685	27371	27424	45210	45210					0.06459528591381059
LFSTYASAE	9	Unmodified	_LFSTYASAE_					0	0	0		ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.734375	2	494.73474	987.454927	-0.025058	-1.2397E-05	0.27804	0.00013755	0.25298	0.00012516	494.7347339992219	67.814	0.78055	67.576	67.289	68.07	-0.23814					50	18	4	0	0	0	0.72875	1	7801	7801		44.117	5.0953	1	2273500			39781	4669	27372	27425	45211	45211					-0.039302179559967954
LFSTYLGLW	9	Unmodified	_LFSTYLGLW_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2682495117188	2	550.294768	1098.57498	-0.074589	-4.1046E-05	-4.42	-0.0024323	-4.4946	-0.0024734	550.2922016667436	80.282	0.5414	80.136	79.743	80.284	-0.146					16	12	2	0	0	0	0.024412	1	9606	9606		50.025	11.218	1	135120	+		39782	20129	27373	27426	45212	45212					0.029638151084100173
LFSTYLGLW	9	Unmodified	_LFSTYLGLW_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.294768	1098.57498	-0.73488	-0.0004044	-3.0176	-0.0016606	-3.7525	-0.002065	550.2930651572992	80.565	0.33394	80.565	80.373	80.707	0	0.16559	-0.00018995	NaN	40.573	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101920	+		39783	20129	27373	27426							0.029638151084100173
LFSTYLGLW	9	Unmodified	_LFSTYLGLW_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.294768	1098.57498	-1.3858	-0.00076261	-1.9129	-0.0010526	-3.2987	-0.0018153	550.2936608384074	80.73	0.37784	80.578	80.343	80.721	-0.15168	0.17827	0.0010259	NaN	40.573	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146840	+		39784	20129	27373	27426							0.029638151084100173
LFSVGVVLAL	10	Unmodified	_LFSVGVVLAL_					0	0	0		nc|ENSG00000186480|O15503-2|INSIG1;ENSG00000186480|ENST00000340368|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	nc|ENSG00000186480|O15503-2|INSIG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7783508300781	2	509.320786	1016.62702	-0.38613	-0.00019667	4.1487	0.002113	3.7626	0.0019163	509.3230779907955	78.386	1.6534	78.402	78.155	79.808	0.015907					70	39	5	0	0	0	0.03519	1	9715	9715		53.351	7.3995	1	3480300			39785	9554	27374	27427	45213	45213					0.11936978522169284
LFSVTTTSFS	10	Unmodified	_LFSVTTTSFS_					0	0	0			REV__ENSG00000175206|ENST00000376480|NPPA	REV__ENSG00000175206|ENST00000376480|NPPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2756958007812	2	545.276772	1088.53899	-0.48422	-0.00026403	-4.1077	-0.0022398	-4.5919	-0.0025039	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.91051	1	9532	9532		53.351	7.3792	1	63206000	+		39786	26928	27375	27428	45214	45214					-0.0017368685912515502
LFSVTTTSFS	10	Unmodified	_LFSVTTTSFS_					0	0	0			REV__ENSG00000175206|ENST00000376480|NPPA	REV__ENSG00000175206|ENST00000376480|NPPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2765502929688	2	545.276772	1088.53899	-0.30267	-0.00016504	-4.3221	-0.0023568	-4.6248	-0.0025218	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	1.0142	1	9676	9676		44.117	1.2525	1	57394000	+		39787	26928	27375	27428	45215	45215					-0.0017368685912515502
LFTAATASLAL	11	Unmodified	_LFTAATASLAL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142997387-142997534:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2969360351562	2	539.810782	1077.60701	-1.3448	-0.00072595	1.1586	0.00062545	-0.18617	-0.0001005	539.8111716602308	65.945	0.2058	65.694	65.52	65.726	-0.25112					8	4	2	0	0	0	0.024749	1	7524	7524		19.104	0	1	147900			39788	15509	27376	27429	45216	45216					0.07131182791545143
LFTALEAKAI	10	Unmodified	_LFTALEAKAI_					0	0	0			REV__ENSG00000181009|ENST00000641181|OR52N5	REV__ENSG00000181009|ENST00000641181|OR52N5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2787475585938	2	538.82115	1075.62775	0.47237	0.00025452	-0.83959	-0.00045239	-0.36722	-0.00019787	538.8205838095666	84.957	0.53214	84.798	84.573	85.105	-0.15869					18	12	2	0	0	0	0.03519	1	10266	10266		34.173	0	1	267980	+		39789	27379	27377	27430	45217	45217					0.0929577317122039
LFTASFLLL	9	Unmodified	_LFTASFLLL_					0	0	0		ENSG00000198326|ENST00000380585|TMEM239;nc|ENSG00000198326|Q8WW34|TMEM239	ENSG00000198326|ENST00000380585|TMEM239	ENSG00000198326|ENST00000380585|TMEM239	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7882690429688	2	512.807511	1023.60047	0.091328	4.6834E-05	-4.286	-0.0021979	-4.1947	-0.0021511	512.8051572787923	70.968	0.97006	70.696	70.427	71.397	-0.27185					35	23	2	0	0	0	0.021616	1	8324	8324		97.473	26.177	1	413370			39790	10122	27378	27431	45218	45218					0.08961289630860847
LFTASFLLL	9	Unmodified	_LFTASFLLL_					0	0	0		ENSG00000198326|ENST00000380585|TMEM239;nc|ENSG00000198326|Q8WW34|TMEM239	ENSG00000198326|ENST00000380585|TMEM239	ENSG00000198326|ENST00000380585|TMEM239	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7882690429688	2	512.807511	1023.60047	-0.055929	-2.8681E-05	-3.6096	-0.001851	-3.6655	-0.0018797	512.8054242762988	70.974	1.5897	70.717	70.379	71.969	-0.25713					52	39	2	0	0	0	0.023355	1	8347	8347		65.803	7.9919	1	416320			39791	10122	27378	27431	45219	45219					0.08961289630860847
LFTAVPRCLQ	10	Unmodified	_LFTAVPRCLQ_					0	0	0		ENST00000397420.7_1_11:838599-838812:+|nuORF	ENST00000397420.7_1_11:838599-838812:+|nuORF	ENST00000397420.7_1_11:838599-838812:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.3193359375	2	574.318251	1146.62195	0.27429	0.00015753	3.2289	0.0018544	3.5032	0.002012	574.3205234203442	104.12	0.8941	103.99	103.48	104.38	-0.12561					30	22	2	0	0	0	1.0122	1	12949	12949		44.377	1.5129	1	76013			39792	13595	27379	27432	45220	45220					0.05450351387912633
LFTDLFGIV	9	Unmodified	_LFTDLFGIV_					0	0	0			REV__ENSG00000155269|ENST00000382487|GPR78	REV__ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7882690429688	2	512.789318	1023.56408	-0.042215	-2.1648E-05	-4.3284	-0.0022196	-4.3707	-0.0022412	512.7870450466863	71.371	0.99565	71.109	70.602	71.598	-0.26199					42	23	2	0	0	0	0.29104	1	8347	8347		76.847	2.5916	1	6164100	+		39793	24999	27380	27433	45221	45221					0.05324412734159978
LFTFSASSRQV	11	Unmodified	_LFTFSASSRQV_					0	0	0			REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	622.3035888671875	2	621.827495	1241.64044	-1.0286	-0.0006396	0.67986	0.00042276	-0.34872	-0.00021684	621.8279338248376	64.138	0.59628	63.945	63.677	64.273	-0.19243					43	14	4	0	0	0	0.024762	1	7255	7255		45.972	19.279	1	709430	+		39794	33432	27381	27434	45222	45222					0.029281845634614
LFTFSASSRQV	11	Unmodified	_LFTFSASSRQV_					0	0	0			REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	621.827495	1241.64044	1.2876	0.00080067	-1.2896	-0.00080192	-0.0019967	-1.2416E-06	621.8266392979771	63.894	0.64296	63.894	63.595	64.238	0	-0.024001	-0.00069738	NaN	23.523	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1251200	+		39795	33432	27381	27434							0.029281845634614
LFTFSASSRQV	11	Unmodified	_LFTFSASSRQV_					0	0	0			REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	621.827495	1241.64044	0.26149	0.0001626	-0.38134	-0.00023713	-0.11985	-7.4528E-05	621.8271573446139	64.119	0.76214	63.868	63.59	64.352	-0.25141	-0.050096	0.0004322	NaN	23.523	46	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1076300	+		39796	33432	27381	27434							0.029281845634614
LFTFSASSRQV	11	Unmodified	_LFTFSASSRQV_					0	0	0			REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	REV__ENST00000480820.5_1_3:157840042-157840078:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	621.827495	1241.64044	1.126	0.00070015	-1.3529	-0.00084127	-0.22694	-0.00014112	621.8266228502472	63.861	0.79233	63.907	63.619	64.411	0.045502	-0.010874	-0.00077608	NaN	23.523	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1365400	+		39797	33432	27381	27434							0.029281845634614
LFTGAAVSI	9	Unmodified	_LFTGAAVSI_					0	0	0		ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.7526550292969	2	439.752736	877.490919	-0.038162	-1.6782E-05	0.55425	0.00024373	0.51609	0.00022695	439.75284741898264	27	0.75926	26.843	26.426	27.185	-0.15664					44	17	4	0	0	0	0.17455	1	1429	1429		94.006	3.2298	1	460810			39798	9660	27382	27435	45223	45223					0.04727284011528354
LFTGAAVSI	9	Unmodified	_LFTGAAVSI_					0	0	0		ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	439.752736	877.490919	-0.75197	-0.00033068	2.539	0.0011165	1.787	0.00078585	439.7534159347799	27.048	0.54827	26.806	26.614	27.163	-0.24217	0.012618	0.0010927	NaN	94.006	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325370			39799	9660	27382	27435							0.04727284011528354
LFTGAAVSI	9	Unmodified	_LFTGAAVSI_					0	0	0		ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	439.752736	877.490919	-0.40952	-0.00018009	1.6072	0.00070679	1.1977	0.0005267	439.75302675844733	26.9	0.55122	26.731	26.462	27.013	-0.16816	-0.062162	0.00027326	NaN	94.006	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397970			39800	9660	27382	27435							0.04727284011528354
LFTGIRRES	9	Unmodified	_LFTGIRRES_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENST00000512390.1_1_5:141033519-141041645:-|nuORF	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8054809570312	2	539.803823	1077.59309	-0.61602	-0.00033253	3.6411	0.0019655	3.0251	0.001633	539.8054598714367	103.14	0.47436	102.97	102.76	103.24	-0.17034					23	11	3	0	0	0	0.91321	1	12829	12829		31.53	1.0262	1	292430			39801	3805	27383	27436	45224	45224					0.057399500831252226
LFTGKLNVAI	10	Unmodified	_LFTGKLNVAI_					0	0	0			REV__ENSG00000204228|ENST00000374662|HSD17B8	REV__ENSG00000204228|ENST00000374662|HSD17B8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3302612304688	2	538.329142	1074.64373	-0.86307	-0.00046461	-0.1496	-8.0532E-05	-1.0127	-0.00054515	538.3287427881261	44.903	0.86298	44.65	44.429	45.292	-0.25252					66	22	4	0	0	0	1.1329	1	4224	4224		27.882	1.1893	1	2168000	+		39802	28575	27384	27437	45225	45225					0.1093947940810267
LFTKSDLPI	9	Unmodified	_LFTKSDLPI_					0	0	0			REV__ENSG00000116016|ENST00000263734|EPAS1	REV__ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2999877929688	2	517.30005	1032.58555	-0.17278	-8.9382E-05	-0.6613	-0.00034209	-0.83408	-0.00043147	517.2996675560152	67.943	1.26	67.962	67.466	68.726	0.018921					84	32	4	0	0	0	0.33245	1	8025	8025		71.296	0	1	8216800	+		39803	22252	27385	27438	45226	45226					0.07055797762859584
LFTLARPF	8	Unmodified	_LFTLARPF_					0	0	0		nc|ENSG00000186153|Q9NZC7-2|WWOX;ENST00000569332.5_1_16:78133625-79245690:+|nuORF;ENSG00000186153|ENST00000566780|WWOX;WWOX|p.S351Y|1|0.07|ENSG00000186153|chr16:78432748-78432748|C/A|missense_variant	nc|ENSG00000186153|Q9NZC7-2|WWOX	nc|ENSG00000186153|Q9NZC7-2|WWOX	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7842102050781	2	482.78437	963.554188	0.15862	7.6582E-05	-0.065129	-3.1443E-05	0.093496	4.5138E-05	482.7841340513957	72.666	0.99342	72.675	72.371	73.365	0.009758					68	24	4	0	0	0	1.0009	1	8782	8782		37.159	0	1	1708200			39804	9520	27386	27439	45227	45227					0.07095269519425074
LFTLCSMPL	9	Unmodified	_LFTLCSMPL_					0	0	0			REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF	REV__ENST00000498152.1_1_3:113344918-113346552:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7871704101562	2	512.763932	1023.51331	-0.25654	-0.00013155	-1.7608	-0.00090288	-2.0173	-0.0010344	512.7645715740065	71.209	0.45833	71.22	70.976	71.434	0.010735					19	11	2	0	0	0	0.018368	1	8546	8546		128.86	17.213	1	225210	+		39805	33872	27387	27440	45228	45228					0.002494240932833236
LFTLKNTAI	9	Unmodified	_LFTLKNTAI_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7849426269531	2	510.808042	1019.60153	-0.54651	-0.00027916	-0.19114	-9.7638E-05	-0.73765	-0.0003768	511.3096707039577	64.644	0.74747	64.442	63.99	64.738	-0.20254					19	13	2	0	0	0	0.024457	1	7370	7370		37.159	3.6435	1	214230	+		39806	20056	27388	27441	45229	45229					0.09251503999746546
LFTLKNTAI	9	Unmodified	_LFTLKNTAI_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.808042	1019.60153	0.087222	4.4554E-05	3.1317	0.0015997	3.2189	0.0016442	510.80775179838525	64.257	0.91922	64.257	63.88	64.8	0	-0.16452	0.0028694	NaN	37.159	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164570	+		39807	20056	27388	27441							0.09251503999746546
LFTLKNTAI	9	Unmodified	_LFTLKNTAI_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.808042	1019.60153	-0.95792	-0.00048931	0.41634	0.00021267	-0.54158	-0.00027664	510.80741824899127	64.68	0.53027	64.417	64.155	64.686	-0.2626	-0.004113	9.5385E-05	NaN	37.159	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170680	+		39808	20056	27388	27441							0.09251503999746546
LFTLKNTAI	9	Unmodified	_LFTLKNTAI_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.808042	1019.60153	0.14926	7.6244E-05	0.76966	0.00039315	0.91893	0.00046939	510.8076905833696	64.413	0.63527	64.459	64.153	64.788	0.045502	0.037131	0.00045634	NaN	37.159	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230580	+		39809	20056	27388	27441							0.09251503999746546
LFTLKNTAI	9	Unmodified	_LFTLKNTAI_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.808042	1019.60153	-0.42234	-0.00021574	-0.38581	-0.00019707	-0.80815	-0.00041281	510.8073951349216	64.688	0.47139	64.454	64.216	64.687	-0.2345	0.031958	-0.0007241	NaN	37.159	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201430	+		39810	20056	27388	27441							0.09251503999746546
LFTLKNTAI	9	Unmodified	_LFTLKNTAI_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.808042	1019.60153	-0.60496	-0.00030902	0.95824	0.00048948	0.35328	0.00018046	511.3107034002698	64.756	0.46993	64.501	64.191	64.661	-0.25563	0.079215	0.000649	NaN	37.159	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283540	+		39811	20056	27388	27441							0.09251503999746546
LFTLNGLSAF	10	Unmodified	_LFTLNGLSAF_					0	0	0			REV__ENSG00000178772|ENST00000323830|CPN2	REV__ENSG00000178772|ENST00000323830|CPN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.8002319335938	2	541.797675	1081.5808	0.84163	0.00045599	4.3573	0.0023608	5.1989	0.0028168	541.8001791385439	17.637	0.44923	17.483	17.308	17.758	-0.15403					12	8	2	0	0	0	1.1246	1	206	206		23.523	1.5628	1	185470	+		39812	27205	27389	27442	45230	45230					0.043269136200933644
LFTMNKLYI	9	Unmodified	_LFTMNKLYI_					0	0	0		ENST00000468005.1_1_7:23455823-23509786:-|nuORF	ENST00000468005.1_1_7:23455823-23509786:-|nuORF	ENST00000468005.1_1_7:23455823-23509786:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	572.2966918945312	2	571.817553	1141.62055	-0.71848	-0.00041084	0.30052	0.00017184	-0.41796	-0.000239	571.8176242489749	65.504	0.96905	65.541	64.967	65.936	0.037384					47	26	2	0	0	0	0.023837	1	7610	7610		74.255	2.3776	1	1146300			39813	14860	27390	27443	45231	45231					0.05540717299163589
LFTNASIGFSV	11	Unmodified	_LFTNASIGFSV_					0	0	0			REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.304443359375	2	578.305864	1154.59717	-0.26828	-0.00015515	-0.31494	-0.00018213	-0.58322	-0.00033728	578.3057002256704	75.833	2.0592	75.658	74.986	77.045	-0.17548					133	50	5	0	0	0	0.94988	1	9102	9102		47.96	0.30219	1	25667000	+		39814	37151	27391	27444	45232	45232					0.02605994786199517
LFTNSIFQSV	10	Unmodified	_LFTNSIFQSV_					0	0	0			REV__PDE4D|p.E331Q|1|0.23|ENSG00000113448|chr5:58993396-58993396|C/G|missense_variant	REV__PDE4D|p.E331Q|1|0.23|ENSG00000113448|chr5:58993396-58993396|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.3055419921875	2	578.305864	1154.59717	-0.46576	-0.00026935	-0.0041391	-2.3936E-06	-0.4699	-0.00027174	578.305917589013	76.029	1.5768	75.756	75.384	76.961	-0.27266					74	38	2	0	0	0	0.83673	1	9107	9107		58.23	0	1	25495000	+		39815	37364	27392	27445	45233	45233					0.026059947861767796
LFTRGGLGF	9	Unmodified	_LFTRGGLGF_					0	0	0			REV__ENST00000502583.5_2_6:7389738-7389888:-|nuORF	REV__ENST00000502583.5_2_6:7389738-7389888:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.259765625	2	484.271627	966.528701	0.048235	2.3359E-05	-4.107	-0.0019889	-4.0588	-0.0019656	484.2690097429951	27.612	0.49623	27.455	27.307	27.804	-0.15664					15	11	2	0	0	0	0.023635	1	1513	1513		66.429	0	1	220390	+		39816	33934	27393	27446	45234	45234					0.044097949970023365
LFTRSDLL	8	Unmodified	_LFTRSDLL_					0	0	0			REV__ENST00000316610.6_1_5:89769768-89770494:-|nuORF	REV__ENST00000316610.6_1_5:89769768-89770494:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2779846191406	2	482.776742	963.538931	0.52381	0.00025288	-0.19218	-9.2781E-05	0.33163	0.0001601	482.776321729423	97.206	1.4382	97.215	96.751	98.189	0.0089111					62	32	3	0	0	0	0.88442	1	12444	12444		52.299	9.8247	1	987190	+		39817	30281	27394	27447	45235	45235					0.05570357931560466
LFTTHLQLI	9	Unmodified	_LFTTHLQLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3200073242188	2	543.321317	1084.62808	-0.6523	-0.00035441	-3.5841	-0.0019473	-4.2364	-0.0023017	543.3193466176134	64.421	1.3172	64.466	64.046	65.363	0.045502					61	35	2	0	0	0	0.13494	1	7489	7489		102.77	0	1	13395000			39818	906	27395	27448	45236	45236					0.08915192891095103
LFTTLGLRG	9	Unmodified	_LFTTLGLRG_					0	0	0		ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant;nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.29193115234375	2	489.292559	976.570566	-0.4915	-0.00024049	1.3142	0.00064305	0.82275	0.00040256	489.29298572711707	66.192	0.71687	66.222	65.89	66.607	0.030106					47	21	3	0	0	0	0.53979	1	7811	7811		56.721	7.2795	1	5435400			39819	23	27396	27449	45237	45237					0.0813435068552053
LFVAIASIAL	10	Unmodified	_LFVAIASIAL_					0	0	0			REV__ENST00000532345.1_1_11:62556776-62556899:+|nuORF	REV__ENST00000532345.1_1_11:62556776-62556899:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.32257080078125	2	509.320786	1016.62702	0.80436	0.00040968	-0.39038	-0.00019883	0.41398	0.00021085	509.32028968883503	107.18	0.56009	107.18	106.91	107.47	0					36	13	3	0	0	0	0.941	1	13791	13791		51.335	3.6781	1	370820	+		39820	27765	27397	27450	45238	45238					0.11936978522146546
LFVFFLFSV	9	Unmodified	_LFVFFLFSV_					0	0	0			REV__ENST00000489741.1_1_2:153550776-153550953:-|nuORF	REV__ENST00000489741.1_1_2:153550776-153550953:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2655639648438	2	559.817879	1117.6212	0.015285	8.557E-06	-3.6421	-0.0020389	-3.6268	-0.0020304	559.8156804419684	83.139	2.4997	83.001	82.91	85.409	-0.1386					84	58	2	0	0	0	0.023355	1	10059	10059		65.803	0	1	484900	+		39821	33682	27398	27451	45239	45239					0.06709880010521374
LFVGFFILY	9	Unmodified	_LFVGFFILY_					0	0	0			REV__ENST00000373075.6_1_1:37959208-37959391:-|nuORF	REV__ENST00000373075.6_1_1:37959208-37959391:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8154907226562	2	559.817879	1117.6212	-0.92952	-0.00052036	-3.239	-0.0018133	-4.1685	-0.0023336	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.65391	1	10095	10095		49.211	1.2952	1	11139000	+		39822	31233	27399	27452	45240	45240					0.06709880010521374
LFVGLLQLNI	10	Unmodified	_LFVGLLQLNI_					0	0	0		ENST00000577423.2_1_17:62936840-62950208:+|nuORF;ENSG00000108932|ENST00000580666|SLC16A6	ENST00000577423.2_1_17:62936840-62950208:+|nuORF	ENST00000577423.2_1_17:62936840-62950208:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.3526000976562	2	565.352617	1128.69068	0.62298	0.0003522	-0.70808	-0.00040031	-0.0851	-4.8111E-05	565.3521001916072	86.934	1.1466	86.792	86.364	87.51	-0.14217					79	26	4	0	0	0	0.941	1	10590	10590		51.335	6.9583	1	1269100			39823	2947	27400	27453	45241	45241					0.13148338959263128
LFVGPGGSTT	10	Unmodified	_LFVGPGGSTT_					0	0	0		ENST00000483371.1_1_1:109171009-109177769:+|nuORF;nc|ENSG00000162636|Q5T8I3-2|EEIG2;ENSG00000162636|ENST00000370035|EEIG2	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2449035644531	2	468.245275	934.475997	-0.18849	-8.8262E-05	-1.0016	-0.00046899	-1.1901	-0.00055725	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	1.1166	1	12938	12938		30.504	0	1	4433200			39824	6968	27401	27454	45242	45242					0.006137921435083626
LFVGVAWAP	9	Unmodified	_LFVGVAWAP_					0	0	0			REV__ENST00000563290.5_1_15:77057753-77059287:-|nuORF	REV__ENST00000563290.5_1_15:77057753-77059287:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.269775390625	2	480.271096	958.527639	-0.49667	-0.00023854	-3.1457	-0.0015108	-3.6424	-0.0017493	480.2694133637876	67.147	0.97224	66.924	66.714	67.686	-0.22374					55	23	3	0	0	0	0.65391	1	7715	7715		49.211	6.8147	1	2156700	+		39825	35220	27402	27455	45243	45243					0.046715806280644756
LFVHIGLFL	9	Unmodified	_LFVHIGLFL_					0	0	0			REV__ENST00000472800.1_1_2:74756265-74756756:-|nuORF	REV__ENST00000472800.1_1_2:74756265-74756756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2785034179688	2	529.823495	1057.63244	0.34035	0.00018033	1.5803	0.00083729	1.9207	0.0010176	529.8246181391658	69.995	0.40936	69.702	69.427	69.836	-0.29292					14	9	2	0	0	0	0.024389	1	8390	8390		49.211	34.346	1	304090	+		39826	22190	27403	27456	45244	45244					0.10592702104645468
LFVHTFTQL	9	Unmodified	_LFVHTFTQL_					0	0	0			REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF	REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3032836914062	2	553.305667	1104.59678	-0.91254	-0.00050491	-3.4116	-0.0018877	-4.3241	-0.0023926	553.3038108038968	36.272	0.93672	36.272	36.029	36.966	0					95	25	6	0	0	0	0.2101	1	2859	2859		87.696	18.069	1	4363500	+		39827	32992	27404	27457	45245	45245					0.048666198569890184
LFVHTFTQL	9	Unmodified	_LFVHTFTQL_					0	0	0			REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF	REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.3034057617188	2	553.305667	1104.59678	-0.59423	-0.00032879	-3.7909	-0.0020975	-4.3852	-0.0024263	553.3036120875139	36.243	1.0045	36.281	35.997	37.002	0.038044					94	27	6	0	0	0	0.29158	1	2791	2791		76.774	3.8949	1	4598800	+		39828	32992	27404	27457	45246	45246					0.048666198569890184
LFVIGTSGKKT	11	Unmodified	_LFVIGTSGKKT_					0	0	0		PIK3CG|p.M995I|1|0.24|ENSG00000105851|chr7:106886247-106886247|G/A|missense_variant	PIK3CG|p.M995I|1|0.24|ENSG00000105851|chr7:106886247-106886247|G/A|missense_variant	PIK3CG|p.M995I|1|0.24|ENSG00000105851|chr7:106886247-106886247|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	1.0344	1	10946	10946		29.17	0.020503	1	1877500			39829	18967	27405	27458	45247	45247					0.10690847091268552
LFVIRKDDI	9	Unmodified	_LFVIRKDDI_					0	0	0		nc|ENSG00000166396|O75635-2|SERPINB7;ENSG00000166396|ENST00000398019|SERPINB7	nc|ENSG00000166396|O75635-2|SERPINB7	nc|ENSG00000166396|O75635-2|SERPINB7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8311767578125	2	559.832049	1117.64954	0.12206	6.8333E-05	-0.45258	-0.00025337	-0.33052	-0.00018504	559.8316431324588	72.787	1.1115	72.797	72.529	73.64	0.0096512					78	27	4	0	0	0	0.35646	1	8811	8811		68.787	3.3214	1	5021100			39830	7550	27406	27459	45248	45248					0.09542577919773976
LFVKAKLEN	9	Unmodified	_LFVKAKLEN_					0	0	0			REV__nc|ENSG00000167705|Q96NA2-2|RILP	REV__nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.250732421875	2	531.321317	1060.62808	0.23561	0.00012519	0.062426	3.3169E-05	0.29804	0.00015836	531.3211492845279	77.276	0.45443	77.014	76.729	77.184	-0.26202					14	11	2	0	0	0	0.024367	1	9159	9159		52.937	10.462	1	374410	+		39831	26184	27407	27460	45249	45249					0.1001919289108173
LFVKENFNI	9	Unmodified	_LFVKENFNI_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.31103515625	2	562.310949	1122.60735	0.044339	2.4932E-05	-0.057416	-3.2286E-05	-0.013077	-7.3534E-06	562.3107990391446	87.524	1.615	87.524	87.152	88.767	0					122	38	4	0	0	0	0.14024	1	11021	11021		101.6	2.9713	1	2858300			39832	5390	27408	27461	45250	45250					0.05094602511417179
LFVKENFNI	9	Unmodified	_LFVKENFNI_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.31103515625	2	562.310949	1122.60735	0.47833	0.00026897	-0.52432	-0.00029483	-0.045989	-2.586E-05	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.091713	2	10970	10970;10992		113.41	17.221	1	3090500			39833	5390	27408	27461	45251;45252	45251					0.05094602511417179
LFVKSFQL	8	Unmodified	_LFVKSFQL_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2906799316406	2	491.292028	980.569503	-0.60574	-0.00029759	-3.662	-0.0017991	-4.2677	-0.0020967	491.2901471375091	73.762	1.0908	73.771	73.558	74.648	0.0096512					48	25	3	0	0	0	0.56067	1	8945	8945		79.939	3.0926	1	5584100	+		39834	26646	27409	27462	45253	45253					0.07844136316623462
LFVLCWVDP	9	Unmodified	_LFVLCWVDP_					0	0	0			REV__ENST00000405510.5_2_22:39141725-39144731:-|nuORF	REV__ENST00000405510.5_2_22:39141725-39144731:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.280029296875	2	546.283346	1090.55214	0.16945	9.2568E-05	4.2185	0.0023045	4.3879	0.002397	546.7873589729045	59.052	0.2365	58.81	58.7	58.936	-0.24165					8	5	2	0	0	0	0.024466	1	6510	6510		25.45	0	1	113660	+		39835	31912	27410	27463	45254	45254					0.01048472719298843
LFVLFLVLL	9	Unmodified	_LFVLFLVLL_					0	0	0			REV__ENSG00000163354|ENST00000368424|DCST2	REV__ENSG00000163354|ENST00000368424|DCST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.8250122070312	2	538.859547	1075.70454	-1.1282	-0.00060796	-0.97241	-0.00052399	-2.1006	-0.001132	538.8592010536751	48.079	0.11144	48.146	48.079	48.191	0.066795					4	2	2	0	0	0	0.024289	1	4822	4822		60.404	11.193	1	66364	+		39836	25556	27411	27464	45255	45255					0.16971616458363314
LFVLHSKTG	9	Unmodified	_LFVLHSKTG_					0	0	0		ENSG00000183773|ENST00000440238|AIFM3	ENSG00000183773|ENST00000440238|AIFM3	ENSG00000183773|ENST00000440238|AIFM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2914733886719	2	501.292559	1000.57057	-0.55827	-0.00027985	-3.5602	-0.0017847	-4.1184	-0.0020645	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.56934	1	10447	10447		54.776	7.119	1	2156900			39837	9273	27412	27465	45256	45256					0.07030350685533904
LFVLKNCLN	9	Unmodified	_LFVLKNCLN_					0	0	0			REV__ITPR2|p.I2320L|1|0.25|ENSG00000123104|chr12:26419201-26419201|T/G|missense_variant	REV__ITPR2|p.I2320L|1|0.25|ENSG00000123104|chr12:26419201-26419201|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.801025390625	2	532.30207	1062.58959	-0.85053	-0.00045274	-0.16056	-8.5464E-05	-1.0111	-0.0005382	532.3021142093431	56.802	0.98576	56.802	56.241	57.227	0					69	27	4	0	0	0	0.024354	1	6380	6380		47.916	0	1	12638000	+		39838	36162	27413	27466	45257	45257					0.06079563984917513
LFVNGHIVKG	10	Unmodified	_LFVNGHIVKG_					0	0	0			REV__ENST00000557638.1_1_14:36152973-36153102:-|nuORF	REV__ENST00000557638.1_1_14:36152973-36153102:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3080444335938	2	542.319109	1082.62366	-0.90156	-0.00048894	3.9304	0.0021315	3.0288	0.0016426	542.3213262286451	80.099	0.25251	80.099	79.953	80.205	0					7	5	2	0	0	0	0.03519	1	9938	9938		51.335	24.643	1	56160	+		39839	35076	27414	27467	45258	45258					0.08565728468170164
LFVNYKLK	8	Unmodified	_LFVNYKLK_					0	0	0		ENST00000506641.5_1_5:1318486-1326363:-|nuORF;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF	ENST00000506641.5_1_5:1318486-1326363:-|nuORF	ENST00000506641.5_1_5:1318486-1326363:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.8101806640625	2	512.813128	1023.6117	-1.4933	-0.00076577	-3.6354	-0.0018643	-5.1287	-0.0026301	512.8109733916239	38.115	0.99481	38.115	37.803	38.797	0					99	27	6	0	0	0	0.52467	1	3175	3175		83.287	6.4406	1	8385100			39840	1131	27415	27468	45259	45259					0.100841117249729
LFVNYKLK	8	Unmodified	_LFVNYKLK_					0	0	0		ENST00000506641.5_1_5:1318486-1326363:-|nuORF;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF	ENST00000506641.5_1_5:1318486-1326363:-|nuORF	ENST00000506641.5_1_5:1318486-1326363:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8101196289062	2	512.813128	1023.6117	-1.0711	-0.00054927	-4.0275	-0.0020653	-5.0985	-0.0026146	512.810734928744	38.043	1.117	37.96	37.636	38.753	-0.082512					111	30	6	0	0	0	0.75307	1	3140	3140		62.978	2.6845	1	7839900			39841	1131	27415	27468	45260	45260					0.100841117249729
LFVPSIIW	8	Unmodified	_LFVPSIIW_					0	0	0			REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	REV__ENST00000477448.1_1_6:107811820-107879187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7923583984375	2	487.789121	973.56369	0.89451	0.00043633	3.6106	0.0017612	4.5051	0.0021975	487.7908895121262	96.705	1.7766	96.582	95.509	97.285	-0.12305					55	40	2	0	0	0	1.0472	1	11988	11988		29.842	0	1	797160	+		39842	33333	27416	27469	45261	45261					0.0758503780494948
LFVPYLGGIV	10	Unmodified	_LFVPYLGGIV_					0	0	0			REV__nc|ENSG00000171202|Q9H061-2|TMEM126A	REV__nc|ENSG00000171202|Q9H061-2|TMEM126A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.3187255859375	2	539.320786	1076.62702	-1.1719	-0.00063201	-2.7702	-0.001494	-3.942	-0.002126	539.3191224608601	61.332	0.70252	61.156	60.914	61.617	-0.1761					43	16	4	0	0	0	0.88914	1	6878	6878		54.765	8.7924	1	1850400	+		39843	26553	27417	27470	45262	45262					0.0917697852216861
LFVQSSVLW	9	Unmodified	_LFVQSSVLW_					0	0	0		LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|10|2|sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|10|2|sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|10|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.8003540039062	2	539.800217	1077.58588	0.10618	5.7316E-05	0.0062626	3.3806E-06	0.11244	6.0697E-05	539.8001652370033	68.333	0.92837	68.099	67.387	68.316	-0.23376					53	22	4	0	0	0	0.29158	1	7915	7915		76.774	7.9873	1	3512500			39844	17934	27418	27471	45263	45263					0.05019217482708882
LFVQSSVLW	9	Unmodified	_LFVQSSVLW_					0	0	0		LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|10|2|sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|10|2|sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|10|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8007202148438	2	539.800217	1077.58588	-0.44014	-0.00023759	0.87529	0.00047248	0.43515	0.00023489	539.8003191670888	68.327	0.88258	68.097	67.715	68.598	-0.23048					56	21	4	0	0	0	0.29158	1	7904	7904		76.774	21.998	1	3290900			39845	17934	27418	27471	45264	45264					0.05019217482708882
LFVRNVLN	8	Unmodified	_LFVRNVLN_					0	0	0			REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7911376953125	2	487.792727	973.5709	-0.96209	-0.0004693	-3.3876	-0.0016524	-4.3497	-0.0021217	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.96719	1	10446	10446		42.474	0	1	1891000	+		39846	29379	27419	27472	45265	45265					0.0830577040536582
LFVSQEQLD	9	Unmodified	_LFVSQEQLD_					0	0	0		ENST00000555508.1_1_14:97029095-97031384:+|nuORF	ENST00000555508.1_1_14:97029095-97031384:+|nuORF	ENST00000555508.1_1_14:97029095-97031384:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2968139648438	2	539.774396	1077.53424	-0.46688	-0.00025201	0.46572	0.00025138	-0.0011609	-6.2663E-07	539.7744740839412	87.522	0.70832	87.343	86.986	87.695	-0.17875					35	16	3	0	0	0	0.016885	1	10672	10672		131.03	0	1	422770			39847	16685	27420	27473	45266	45266					-0.001425710018565951
LFVSQEQLD	9	Unmodified	_LFVSQEQLD_					0	0	0		ENST00000555508.1_1_14:97029095-97031384:+|nuORF	ENST00000555508.1_1_14:97029095-97031384:+|nuORF	ENST00000555508.1_1_14:97029095-97031384:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2948608398438	2	539.774396	1077.53424	-0.87654	-0.00047314	0.72325	0.00039039	-0.1533	-8.2746E-05	539.7746376066195	87.459	0.74675	87.322	87.038	87.784	-0.13734					38	17	3	0	0	0	0.020356	1	10645	10645		115.49	3.0831	1	425360			39848	16685	27420	27473	45267	45267					-0.001425710018565951
LFVSRKWR	8	Unmodified	_LFVSRKWR_					0	0	0		nc|ENSG00000087589|Q9NQ75-2|CASS4;ENST00000497244.1_1_20:54987478-55028248:+|nuORF;ENSG00000087589|ENST00000679887|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2753295898438	2	546.327268	1090.63998	-0.072992	-3.9878E-05	-3.4198	-0.0018683	-3.4928	-0.0019082	546.8258648915963	77.644	0.3441	77.381	77.141	77.485	-0.26202					10	7	2	0	0	0	0.027866	1	9238	9238		55.504	0	1	115600			39849	1855	27421	27474	45268	45268					0.09828854424927158
LFVVFFAIY	9	Unmodified	_LFVVFFAIY_					0	0	0		ENSG00000231861|ENST00000427338|OR5K2;ENSG00000232382|ENST00000642057|OR5K1;ENSG00000206536|ENST00000383695|OR5K3	ENSG00000231861|ENST00000427338|OR5K2	ENSG00000231861|ENST00000427338|OR5K2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7320556640625	2	559.817879	1117.6212	0.34607	0.00019374	-4.2473	-0.0023777	-3.9012	-0.002184	559.8154212058321	96.221	1.6031	96.085	95.682	97.285	-0.13671					72	36	3	0	0	0	0.024389	1	11969	11969		39.021	0	1	725670			39850	10701	27422	27475	45269	45269					0.06709880010521374
LFVVFLGLQ	9	Unmodified	_LFVVFLGLQ_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2715454101562	2	518.315503	1034.61645	0.37899	0.00019644	2.0099	0.0010418	2.3889	0.0012382	518.3164402300794	85.176	3.8443	85.176	83.52	87.364	0					168	90	3	0	0	0	0.024293	1	10709	10709		52.299	2.2746	1	571570	+		39851	26903	27423	27476	45270	45270					0.10052995867749814
LFVVLLLSYVL	11	Unmodified	_LFVVLLLSYVL_					0	0	0		ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2665710449219	3	426.940576	1277.7999	0.032124	1.3715E-05	3.0844	0.0013168	3.1165	0.0013306	426.941982921349	42.275	0.69469	42.275	42.02	42.715	0					45	19	4	0	0	0	0.024727	1	3946	3946		10.587	0	1	1594900			39852	8749	27424	27477	45271	45271					0.17210924858750332
LFVVNYSF	8	Unmodified	_LFVVNYSF_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.25030517578125	2	494.760561	987.506569	-1.1965	-0.00059198	0.54346	0.00026888	-0.65304	-0.0003231	494.7609627403745	68.907	0.4929	68.645	68.466	68.959	-0.26166					17	11	2	0	0	0	0.027866	1	7973	7973		31.955	8.9124	1	124060	+		39853	26872	27425	27478	45272	45272					0.012315705285686818
LFVVYLALQ	9	Unmodified	_LFVVYLALQ_					0	0	0		ENSG00000160446|ENST00000372663|ZDHHC12;nc|ENSG00000160446|Q96GR4-3|ZDHHC12;nc|ENSG00000160446|Q96GR4-2|ZDHHC12;ENST00000467312.1_1_9:131483560-131485040:-|nuORF	ENSG00000160446|ENST00000372663|ZDHHC12	ENSG00000160446|ENST00000372663|ZDHHC12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8204956054688	2	533.320786	1064.62702	0.22848	0.00012185	-2.897	-0.001545	-2.6685	-0.0014232	533.3193958870153	106.38	0.47508	106.38	106.2	106.68	0					30	14	3	0	0	0	0.72268	1	13676	13676		44.531	2.0566	1	253890			39854	6816	27426	27479	45273	45273					0.09728978522161924
LFWKYLDL	8	Unmodified	_LFWKYLDL_					0	0	0		nc|ENSG00000123901|Q9NYM4-2|GPR83;ENSG00000123901|ENST00000243673|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.7686767578125	2	549.305136	1096.59572	-1.0053	-0.0005522	-2.6579	-0.00146	-3.6632	-0.0020122	549.3034354997412	83.303	1.2919	83.303	82.793	84.084	0					48	29	2	0	0	0	0.027866	1	10487	10487		31.955	5.1588	1	115610			39855	4001	27427	27480	45274	45274					0.05128405488062526
LFWLIAIL	8	Unmodified	_LFWLIAIL_					0	0	0		nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2;ENSG00000171130|ENST00000425642|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2;ENST00000420036.1_1_2:33827231-33827309:+|nuORF;ENST00000490092.1_1_7:149571926-149575857:+|nuORF;ENSG00000113732|ENST00000519374|ATP6V0E1	nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2	nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.73468017578125	2	494.815139	987.615725	-0.06221	-3.0783E-05	-4.3446	-0.0021498	-4.4068	-0.0021805	494.8129222156794	67.809	0.57585	67.57	67.334	67.909	-0.23814					23	13	2	0	0	0	0.027866	1	7813	7813		54.895	0	1	271560			39856	18511	27428	27481	45275	45275					0.12142201218682658
LFWMIIEI	8	Unmodified	_LFWMIIEI_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|143|1|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|143|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7971801757812	2	532.796089	1063.57763	-1.3124	-0.00069924	3.409	0.0018163	2.0966	0.001117	532.7977112360818	90.736	0.9549	90.581	90.264	91.219	-0.1552					66	22	5	0	0	0	0.52467	1	11134	11134		83.287	11.991	1	3598100	+		39857	19337	27429	27482	45276	45276					0.048379472417309444
LFWSTIKKPP	10	Unmodified	_LFWSTIKKPP_					0	0	0			REV__ENST00000493078.1_1_2:234070438-234073043:+|nuORF	REV__ENST00000493078.1_1_2:234070438-234073043:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.8750305175781	3	406.241137	1215.70158	0.66115	0.00026859	-2.243	-0.00091118	-1.5818	-0.0006426	406.24017313594555	19.954	0.44253	19.73	19.483	19.926	-0.22344					23	8	4	0	0	0	0.03519	1	456	456		58.23	25.479	1	84706	+		39858	26302	27430	27483	45277	45277					0.1023574133355396
LFWTKCNI	8	Unmodified	_LFWTKCNI_					0	0	0			REV__ENST00000505095.1_1_4:166024222-166033925:-|nuORF	REV__ENST00000505095.1_1_4:166024222-166033925:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2962646484375	2	512.767863	1023.52117	0.5724	0.00029351	-2.5197	-0.001292	-1.9473	-0.00099852	513.2680048742743	85.041	1.2446	85.041	84.463	85.708	0					76	29	4	0	0	0	0.027866	1	10734	10734		57.811	25.856	1	509880	+		39859	34000	27431	27484	45278	45278					0.010353194050480852
LFWVTEISI	9	Unmodified	_LFWVTEISI_					0	0	0			REV__ENST00000264203.7_1_1:19665671-19665956:-|nuORF	REV__ENST00000264203.7_1_1:19665671-19665956:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3056030273438	2	554.307875	1106.6012	0.29766	0.000165	-4.4672	-0.0024762	-4.1695	-0.0023112	554.3053230362917	75.615	1.5245	75.625	75.25	76.774	0.010376					98	39	4	0	0	0	0.59099	1	9333	9333		53.351	0.41475	1	9403400	+		39860	29714	27432	27485	45279	45279					0.0521608427989122
LFYAQGRSL	9	Unmodified	_LFYAQGRSL_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.81494140625	2	527.787641	1053.56073	-0.10585	-5.5869E-05	2.9094	0.0015355	2.8035	0.0014797	527.7890697080784	43.924	0.93264	43.961	43.308	44.241	0.0369					54	24	3	0	0	0	0.023655	1	4070	4070		60.118	0	1	2019200	+		39861	24386	27433	27486	45280	45280					0.03609162680140798
LFYGADLII	9	Unmodified	_LFYGADLII_					0	0	0			REV__ENSG00000090020|ENST00000263980|SLC9A1	REV__ENSG00000090020|ENST00000263980|SLC9A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7879638671875	2	512.789318	1023.56408	0.12625	6.4738E-05	-4.3775	-0.0022447	-4.2512	-0.00218	512.7869369561231	71.396	1.045	71.121	70.743	71.788	-0.27509					52	24	3	0	0	0	0.30842	1	8349	8349		74.517	8.7134	1	4723800	+		39862	20867	27434	27487	45281	45281					0.05324412734148609
LFYGHVTI	8	Unmodified	_LFYGHVTI_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2684631347656	2	475.260728	948.506903	0.55821	0.0002653	2.9874	0.0014198	3.5456	0.0016851	475.26181584104927	107.07	0.35064	106.91	106.74	107.09	-0.15772					29	12	3	0	0	0	1.0133	1	13287	13287		35.201	0	1	177380	+		39863	27515	27435	27488	45282	45282					0.03058990248439386
LFYGHVTI	8	Unmodified	_LFYGHVTI_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.260728	948.506903	1.9281	0.00091637	1.1804	0.00056098	3.1085	0.0014774	475.2611259983402	107.16	0.31938	107.16	106.95	107.26	0	0.1718	-0.0021934	NaN	35.201	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69425	+		39864	27515	27435	27488							0.03058990248439386
LFYGHVTI	8	Unmodified	_LFYGHVTI_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.260728	948.506903	0.29421	0.00013983	2.2708	0.0010792	2.565	0.001219	475.2615055991353	107.17	0.31599	107.17	107.03	107.34	0.0018311	0.18951	-0.0011569	NaN	35.201	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107650	+		39865	27515	27435	27488							0.03058990248439386
LFYGHVTI	8	Unmodified	_LFYGHVTI_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.260728	948.506903	0.26468	0.00012579	3.65	0.0017347	3.9147	0.0018605	475.26194172892065	106.97	0.35281	106.85	106.64	106.99	-0.12381	-0.13624	0.00015402	NaN	35.201	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63034	+		39866	27515	27435	27488							0.03058990248439386
LFYGHVTI	8	Unmodified	_LFYGHVTI_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.260728	948.506903	-1.2009	-0.00057075	4.8791	0.0023189	3.6782	0.0017481	475.2626924625848	106.97	0.39989	106.83	106.68	107.08	-0.1346	-0.15006	0.0013224	NaN	35.201	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169230	+		39867	27515	27435	27488							0.03058990248439386
LFYGHVTI	8	Unmodified	_LFYGHVTI_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	475.260728	948.506903	0.55821	0.0002653	2.9874	0.0014198	3.5456	0.0016851	475.26181584104927	107.07	0.35064	106.91	106.74	107.09	-0.15772	-0.07502	-0.00047575	NaN	35.201	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177380	+		39868	27515	27435	27488							0.03058990248439386
LFYIPMIL	8	Unmodified	_LFYIPMIL_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.2744445800781	2	505.293182	1008.57181	-0.45352	-0.00022916	2.7861	0.0014078	2.3326	0.0011786	505.2944499239749	38.049	0.60954	37.869	37.594	38.203	-0.17929					50	17	4	0	0	0	0.027866	1	3092	3092		24.504	6.1796	1	1017500			39869	8686	27436	27489	45283	45283					0.06786848730052952
LFYKGKMF	8	Unmodified	_LFYKGKMF_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7049560546875	2	517.280606	1032.54666	-0.21946	-0.00011352	-0.22251	-0.0001151	-0.44197	-0.00022862	517.280450835251	33.822	0.57271	33.621	33.365	33.938	-0.20019					29	14	3	0	0	0	0.027866	1	2466	2466		29.842	0	1	918160			39870	7160	27437	27490	45284	45284					0.03168793927511615
LFYLSVIS	8	Unmodified	_LFYLSVIS_					0	0	0			REV__ENSG00000129951|ENST00000520876|PLPPR3	REV__ENSG00000129951|ENST00000520876|PLPPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.77716064453125	2	471.270761	940.52697	-0.32952	-0.0001553	-3.1788	-0.0014981	-3.5084	-0.0016534	471.26911984348123	61.932	0.63493	61.675	61.383	62.018	-0.25725					26	15	2	0	0	0	0.027866	1	6945	6945		35.201	9.6267	1	416830	+		39871	23069	27438	27491	45285	45285					0.054327411883718923
LFYRLEIL	8	Unmodified	_LFYRLEIL_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7888793945312	2	533.81841	1065.62227	-0.67023	-0.00035778	-2.4659	-0.0013163	-3.1361	-0.0016741	533.8168206500939	78.128	0.48782	78.128	77.876	78.363	0					18	11	2	0	0	0	0.027866	1	9660	9660		85.359	8.5128	1	284410			39872	9045	27439	27492	45286	45286					0.0920809437943717
LFYSHSTPK	9	Unmodified	_LFYSHSTPK_					0	0	0		ENST00000447976.1_3_22:30681611-30689721:-|nuORF;ENST00000330168.9_3_22:30681611-30688778:-|nuORF;ENSG00000239282|ENST00000407689|CASTOR1	ENST00000447976.1_3_22:30681611-30689721:-|nuORF	ENST00000447976.1_3_22:30681611-30689721:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8314819335938	2	540.279649	1078.54475	-0.37229	-0.00020114	-3.8727	-0.0020923	-4.245	-0.0022935	540.277777656427	75.75	0.58057	75.761	75.471	76.051	0.011642					18	15	2	0	0	0	0.024261	1	9273	9273		54.776	20.604	1	453600			39873	10754	27440	27493	45287	45287					0.00861456443226416
LGAAAKVLIP	10	Unmodified	_LGAAAKVLIP_					0	0	0			REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7772216796875	2	476.813128	951.611703	0.57248	0.00027296	-0.54974	-0.00026213	0.022731	1.0838E-05	476.81275926378083	68.791	0.75986	68.498	68.211	68.97	-0.29267					37	19	3	0	0	0	0.03519	1	8286	8286		38.806	3.6054	1	808590	+		39874	30248	27441	27494	45288	45288					0.13396111724989623
LGAAGKFDR	9	Unmodified	_LGAAGKFDR_					0	0	0			REV__ENST00000489180.6_1_1:5923327-5936049:-|nuORF	REV__ENST00000489180.6_1_1:5923327-5936049:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.28155517578125	2	467.758884	933.503215	-0.6084	-0.00028458	0.037087	1.7348E-05	-0.57131	-0.00026724	467.75883740153455	45.021	0.68436	44.921	44.672	45.356	-0.099445					39	18	3	0	0	0	0.023635	1	4273	4273		66.429	20.477	1	515070	+		39875	23227	27442	27495	45289	45289					0.033803204745595394
LGAAHRVGR	9	Unmodified	_LGAAHRVGR_					0	0	0			REV__ENST00000272227.7_1_2:10942757-10952923:-|nuORF	REV__ENST00000272227.7_1_2:10942757-10952923:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2954406738281	2	468.777942	935.541332	2.1861	0.0010248	1.3104	0.00061427	3.4964	0.001639	468.7782824876007	63.99	1.1647	64.035	63.438	64.603	0.045502					60	31	3	0	0	0	0.024487	1	7345	7345		24.203	0	1	686430	+		39876	29810	27443	27496	45290	45290					0.07098251179900217
LGAAMFMI	8	Unmodified	_LGAAMFMI_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2539367675781	2	427.21916	852.423767	-0.649	-0.00027726	3.7862	0.0016176	3.1372	0.0013403	427.2211536414815	23.379	0.36244	23.379	23.245	23.607	0					10	8	2	0	0	0	0.027866	1	917	917		24.504	0	1	52639			39877	137	27444	27497	45291	45291					-0.008347857954390747
LGAAPAPAAAP	11	Unmodified	_LGAAPAPAAAP_					0	0	0			REV__ENSG00000233493|ENST00000444469|TMEM238	REV__ENSG00000233493|ENST00000444469|TMEM238	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.2684631347656	2	453.75581	905.497067	-0.21457	-9.7365E-05	0.61419	0.00027869	0.39961	0.00018133	453.75598758674886	25.557	0.54034	25.387	25.081	25.621	-0.17078					26	12	3	0	0	0	0.024791	1	1209	1209		31.955	0	1	273230	+		39878	28908	27445	27498	45292	45292					0.04053802243026894
LGAAPAPAAAP	11	Unmodified	_LGAAPAPAAAP_					0	0	0			REV__ENSG00000233493|ENST00000444469|TMEM238	REV__ENSG00000233493|ENST00000444469|TMEM238	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.75581	905.497067	0.39334	0.00017848	0.47385	0.00021501	0.86719	0.00039349	453.75555608696135	25.507	0.37359	25.587	25.418	25.792	0.08009	0.081238	-0.00028126	NaN	24.203	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37386	+		39879	28908	27445	27498							0.04053802243026894
LGAARLPK	8	Unmodified	_LGAARLPK_					0	0	0			REV__nc|ENSG00000276717|A8MTI9|PRSS47P	REV__nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8839111328125	2	413.268887	824.523222	-0.43922	-0.00018152	1.1414	0.0004717	0.70216	0.00029018	413.26927049300457	28.013	0.32853	27.768	27.593	27.921	-0.24524					12	7	2	0	0	0	0.027866	1	1608	1608		19.36	0	1	60137	+		39880	37205	27446	27499	45293	45293					0.10394116205179671
LGADLRHS	8	Unmodified	_LGADLRHS_					0	0	0			REV__nc|ENSG00000196357|Q8N9K5|ZNF565	REV__nc|ENSG00000196357|Q8N9K5|ZNF565	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77191162109375	2	434.735409	867.456264	-0.32808	-0.00014263	-0.10539	-4.5816E-05	-0.43347	-0.00018844	434.73530290658584	24.905	0.99569	24.905	24.253	25.248	0					34	22	3	0	0	0	0.027866	1	1165	1165		25.45	13.939	1	120950	+		39881	37053	27447	27500	45294	45294					0.017234609234265008
LGADLRHS	8	Unmodified	_LGADLRHS_					0	0	0			REV__nc|ENSG00000196357|Q8N9K5|ZNF565	REV__nc|ENSG00000196357|Q8N9K5|ZNF565	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	434.735409	867.456264	-0.95377	-0.00041464	0.73996	0.00032169	-0.21381	-9.2949E-05	434.7356772726194	24.96	0.47967	24.925	24.681	25.161	-0.034395	0.010343	0.00022009	NaN	30.504	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131740	+		39882	37053	27447	27500							0.017234609234265008
LGADPAGMKV	10	Unmodified	_LGADPAGMKV_					0	0	0			REV__ENSG00000181867|ENST00000321339|FTMT	REV__ENSG00000181867|ENST00000321339|FTMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28961181640625	2	479.754953	957.495352	-0.51134	-0.00024532	0.1519	7.2876E-05	-0.35944	-0.00017244	479.7550545010865	48.255	1.7005	48.322	47.87	49.57	0.066799					76	46	2	0	0	0	0.03519	1	4908	4908		49.442	13.823	1	435500	+		39883	27434	27448	27501	45295	45295					0.014904251627854137
LGAEGEPTL	9	Unmodified	_LGAEGEPTL_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2557678222656	2	443.729458	885.444362	-0.31253	-0.00013868	1.8525	0.00082203	1.54	0.00068335	443.73025959959426	53.621	0.5674	53.717	53.371	53.938	0.095669					32	15	3	0	0	0	0.023355	1	5742	5742		45.952	1.8352	1	314990	+		39884	20051	27449	27502	45296	45296					-0.0029420061041491863
LGAEGEPTL	9	Unmodified	_LGAEGEPTL_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.729458	885.444362	-1.1765	-0.00052203	1.5164	0.00067289	0.33999	0.00015087	443.73018854003107	53.895	0.48998	53.759	53.531	54.021	-0.13617	-0.012423	0.00016865	NaN	45.952	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366040	+		39885	20051	27449	27502							-0.0029420061041491863
LGAEGEPTL	9	Unmodified	_LGAEGEPTL_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.729458	885.444362	-0.1487	-6.5981E-05	0.58615	0.00026009	0.43746	0.00019411	443.729686646202	54.114	0.51184	53.868	53.591	54.103	-0.2453	0.096796	-0.00065695	NaN	45.952	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534300	+		39886	20051	27449	27502							-0.0029420061041491863
LGAEGEPTL	9	Unmodified	_LGAEGEPTL_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.729458	885.444362	0.089222	3.959E-05	-0.28921	-0.00012833	-0.19999	-8.8742E-05	443.7296493298078	54.01	0.50768	53.812	53.588	54.096	-0.19739	0.040579	-0.0014338	NaN	45.952	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782270	+		39887	20051	27449	27502							-0.0029420061041491863
LGAERAGPE	9	Unmodified	_LGAERAGPE_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7792663574219	2	450.232699	898.450845	-0.14004	-6.305E-05	0.27777	0.00012506	0.13773	6.2012E-05	450.23253044324144	30.429	0.71176	30.279	30.056	30.768	-0.14952					22	16	2	0	0	0	0.024319	1	1962	1962		31.53	0	1	188270	+		39888	22746	27450	27503	45297	45297					-0.0024426265905503897
LGAFFGLIG	9	Unmodified	_LGAFFGLIG_					0	0	0			REV__ENSG00000109919|ENST00000302503|MTCH2	REV__ENSG00000109919|ENST00000302503|MTCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.7555236816406	2	447.757821	893.501089	-0.083711	-3.7482E-05	-4.2509	-0.0019034	-4.3346	-0.0019409	447.75574862170924	57.168	0.79998	57.168	56.841	57.641	0					59	21	4	0	0	0	0.48384	1	6427	6427		60.404	2.5924	1	3942500	+		39889	21823	27451	27504	45298	45298					0.05007891736761394
LGAFFGLIG	9	Unmodified	_LGAFFGLIG_					0	0	0			REV__ENSG00000109919|ENST00000302503|MTCH2	REV__ENSG00000109919|ENST00000302503|MTCH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	447.757821	893.501089	-0.54772	-0.00024524	-3.7499	-0.001679	-4.2976	-0.0019243	447.7559854654845	57.525	0.6147	57.347	57.06	57.675	-0.17775	0.057071	0.00050243	NaN	60.404	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	948660	+		39890	21823	27451	27504							0.05007891736761394
LGAFFGLIG	9	Unmodified	_LGAFFGLIG_					0	0	0			REV__ENSG00000109919|ENST00000302503|MTCH2	REV__ENSG00000109919|ENST00000302503|MTCH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	447.757821	893.501089	0.10843	4.8549E-05	-4.4256	-0.0019816	-4.3172	-0.0019331	447.7556566857759	57.572	0.59988	57.382	57.112	57.712	-0.19017	0.091441	-0.00010275	NaN	60.404	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	860140	+		39891	21823	27451	27504							0.05007891736761394
LGAFFGLIG	9	Unmodified	_LGAFFGLIG_					0	0	0			REV__ENSG00000109919|ENST00000302503|MTCH2	REV__ENSG00000109919|ENST00000302503|MTCH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	447.757821	893.501089	-0.54784	-0.0002453	-4.4167	-0.0019776	-4.9646	-0.0022229	447.7559873252323	57.681	0.53784	57.447	57.164	57.702	-0.23363	0.15741	-9.4782E-05	NaN	60.404	41	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950720	+		39892	21823	27451	27504							0.05007891736761394
LGAFYPLP	8	Unmodified	_LGAFYPLP_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2665710449219	2	439.244547	876.47454	0.63558	0.00027917	-1.5186	-0.00066704	-0.88303	-0.00038787	439.2438852269058	43.056	0.50706	43.087	42.795	43.302	0.030827					18	13	2	0	0	0	0.027866	1	3970	3970		10.185	0	1	149500			39893	10923	27452	27505	45299	45299					0.03136202845416847
LGAGAEYSPA	10	Unmodified	_LGAGAEYSPA_					0	0	0		ENST00000487292.1_3_15:42134104-42135875:+|nuORF;ENST00000491746.5_1_15:42134104-42137535:+|nuORF	ENST00000487292.1_3_15:42134104-42135875:+|nuORF	ENST00000487292.1_3_15:42134104-42135875:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.3052673339844	2	468.227082	934.439611	-0.23163	-0.00010846	3.4478	0.0016143	3.2161	0.0015059	468.22852540759015	53.275	0.7091	53.127	52.53	53.239	-0.14723					23	18	2	0	0	0	0.03519	1	5710	5710		21.96	0	1	120930			39894	15364	27453	27506	45300	45300					-0.030230847531925065
LGAGAGGVERP	11	Unmodified	_LGAGAGGVERP_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2593688964844	2	492.267073	982.519593	0.21205	0.00010438	-0.064867	-3.1932E-05	0.14718	7.2451E-05	492.2666524696594	37.019	0.98215	36.955	36.47	37.452	-0.063385					77	25	5	0	0	0	0.40931	1	2997	2997		82.241	0	1	12205000	+		39895	19991	27454	27507	45301	45301					0.027634016406636874
LGAGPARPL	9	Unmodified	_LGAGPARPL_					0	0	0		ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7748718261719	2	426.25852	850.502486	-0.12992	-5.5382E-05	0.49114	0.00020935	0.36121	0.00015397	426.2585868594491	41.572	0.76486	41.572	41.189	41.954	0					48	21	3	0	0	0	0.024443	1	3802	3802		12.959	8.9739	1	616450			39896	11244	27455	27508	45302	45302					0.07125525825506429
LGAGRDERRLH	11	Unmodified	_LGAGRDERRLH_					0	0	0		ENST00000517870.1_1_1:53099041-53108627:+|nuORF	ENST00000517870.1_1_1:53099041-53108627:+|nuORF	ENST00000517870.1_1_1:53099041-53108627:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.2646484375	3	427.237448	1278.69051	-0.61785	-0.00026397	-3.7432	-0.0015992	-4.3611	-0.0018632	427.2372388854622	54.105	0.35983	53.969	53.661	54.021	-0.13617					13	11	2	0	0	0	0.024723	1	5710	5710		28.577	0.93281	1	110610			39897	15919	27456	27509	45303	45303					0.062317320119746
LGAKAMEQE	9	Oxidation (M)	_LGAKAM(Oxidation (M))EQE_		LGAKAM(1)EQE		LGAKAM(70)EQE	0	0	1			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.73736572265625	2	496.739499	991.464446	-1.2569	-0.00062433	-2.7791	-0.0013805	-4.0359	-0.0020048	496.73780868644724	33.587	1.2358	33.421	32.476	33.711	-0.16565					57	30	4	0	0	0	0.34489	1	2394	2394		69.628	14.733	1	2227100	+		39898	24718	27457	27510	45304	45304		732			-0.03162772942118863
LGAKHCVK	8	Unmodified	_LGAKHCVK_					0	0	0		nc|ENSG00000160221|P0DPI2-2|GATD3;ENSG00000160221|ENST00000291577|GATD3	nc|ENSG00000160221|P0DPI2-2|GATD3	nc|ENSG00000160221|P0DPI2-2|GATD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.26446533203125	2	428.247098	854.479642	0.87192	0.0003734	2.4846	0.001064	3.3565	0.0014374	428.2487515744247	54.403	0.69781	54.197	53.913	54.611	-0.20613					30	18	2	0	0	0	0.027866	1	5728	5728		12.959	0	1	225510			39899	6795	27458	27511	45305	45305					0.04658183436390573
LGAKKRSQ	8	Unmodified	_LGAKKRSQ_					0	0	0			REV__CALB1|p.A46S|1|0.03|ENSG00000104327|chr8:90082046-90082046|C/A|missense_variant	REV__CALB1|p.A46S|1|0.03|ENSG00000104327|chr8:90082046-90082046|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.28741455078125	2	444.274701	886.534849	0.85239	0.0003787	-3.5744	-0.001588	-2.722	-0.0012093	444.27164474788515	18.198	0.24489	18.041	17.854	18.099	-0.15637					8	4	3	0	0	0	0.027866	1	268	268		17.365	8.5426	1	20493	+		39900	19239	27459	27512	45306	45306					0.08704313228520277
LGALGPVPS	9	Unmodified	_LGALGPVPS_					0	0	0			REV__ENST00000539206.1_1_12:6264276-6264504:-|nuORF	REV__ENST00000539206.1_1_12:6264276-6264504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.7388610839844	2	405.739628	809.464704	0.1958	7.9443E-05	-0.27388	-0.00011112	-0.078078	-3.1679E-05	405.7393835161285	62.469	0.94591	62.469	62.25	63.196	0					51	26	3	0	0	0	0.88411	1	7255	7255		33.516	0	1	2975700	+		39901	34730	27460	27513	45307	45307					0.05235014840036456
LGALGPVPS	9	Unmodified	_LGALGPVPS_					0	0	0			REV__ENST00000539206.1_1_12:6264276-6264504:-|nuORF	REV__ENST00000539206.1_1_12:6264276-6264504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.7393798828125	2	405.739628	809.464704	-0.67	-0.00027185	0.29898	0.00012131	-0.37102	-0.00015054	405.7396250716856	62.722	0.80241	62.483	62.293	63.096	-0.23926					44	21	3	0	0	0	0.88411	1	7262	7262		33.516	0	1	2944500	+		39902	34730	27460	27513	45308	45308					0.05235014840036456
LGALKWLL	8	Unmodified	_LGALKWLL_					0	0	0			REV__ENST00000475843.5_1_2:220462835-220466521:+|nuORF	REV__ENST00000475843.5_1_2:220462835-220466521:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7508239746094	2	457.297114	912.579674	-0.11491	-5.2547E-05	-4.0109	-0.0018342	-4.1258	-0.0018867	457.29498751452354	41.996	0.37164	41.864	41.678	42.049	-0.1322					16	10	2	0	0	0	0.027866	1	3815	3815		21.702	0	1	112780	+		39903	24344	27461	27514	45309	45309					0.11988744041843802
LGALLGTAW	9	Unmodified	_LGALLGTAW_					0	0	0		ENST00000553164.1_1_12:56708586-56709779:-|nuORF;nc|ENSG00000257727|Q9Y2B0-2|CNPY2;ENST00000551276.1_1_12:56706564-56708983:-|nuORF;ENSG00000257727|ENST00000273308|CNPY2	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2684326171875	2	451.260728	900.506903	-1.0239	-0.00046204	-3.5398	-0.0015974	-4.5637	-0.0020594	451.2589423532142	37.827	0.64314	37.827	37.523	38.166	0					38	18	3	0	0	0	0.024258	1	3161	3161		44.531	19.081	1	2139600			39904	16632	27462	27515	45310	45310					0.052669902484126396
LGALLGTAW	9	Unmodified	_LGALLGTAW_					0	0	0		ENST00000553164.1_1_12:56708586-56709779:-|nuORF;nc|ENSG00000257727|Q9Y2B0-2|CNPY2;ENST00000551276.1_1_12:56706564-56708983:-|nuORF;ENSG00000257727|ENST00000273308|CNPY2	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.260728	900.506903	0.011215	5.0611E-06	-4.4974	-0.0020295	-4.4861	-0.0020244	451.2586556753533	37.824	0.28792	37.645	37.522	37.809	-0.17929	-0.12176	-0.00081119	NaN	44.531	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100620			39905	16632	27462	27515							0.052669902484126396
LGALMYDML	9	Unmodified	_LGALMYDML_					0	0	0		ENSG00000175634|ENST00000312629|RPS6KB2;ENST00000526268.5_1_11:67200292-67200735:+|nuORF;ENST00000472940.5_1_17:58008327-58013674:+|nuORF;VMP1-RPS6KB1|1|fusion;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;RPS6KB1-VMP1|10|fusion;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1	ENSG00000175634|ENST00000312629|RPS6KB2;VMP1-RPS6KB1|1|fusion	ENSG00000175634|ENST00000312629|RPS6KB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8176879882812	2	513.753564	1025.49257	-0.12581	-6.4633E-05	-0.90848	-0.00046674	-1.0343	-0.00053137	513.7527754399605	72.784	0.57829	72.794	72.529	73.107	0.0096512					26	13	3	0	0	0	0.023775	1	8758	8758		68.485	12.98	1	309040			39906	8578;38144	27463	27516	45311	45311					-0.019151662864032915
LGAMARFW	8	Unmodified	_LGAMARFW_					0	0	0			REV__ENSG00000167625|ENST00000301215|ZNF526	REV__ENSG00000167625|ENST00000301215|ZNF526	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2607421875	2	476.247098	950.479642	-0.49683	-0.00023662	1.5033	0.00071593	1.0064	0.00047932	476.2479325233651	28.442	0.2788	28.29	28.162	28.441	-0.15195					10	6	2	0	0	0	0.027866	1	1644	1644		14.664	0	1	35398	+		39907	26168	27464	27517	45312	45312					0.0024218343638722217
LGAMEHFHMKL	11	2 Oxidation (M)	_LGAM(Oxidation (M))EHFHM(Oxidation (M))KL_		LGAM(1)EHFHM(1)KL		LGAM(40)EHFHM(40)KL	0	0	2		BCAP31|p.P86L|1|0.38|ENSG00000185825|chrX:153715626-153715626|G/A|missense_variant	BCAP31|p.P86L|1|0.38|ENSG00000185825|chrX:153715626-153715626|G/A|missense_variant	BCAP31|p.P86L|1|0.38|ENSG00000185825|chrX:153715626-153715626|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.2168273925781	3	449.217897	1344.63186	0.92964	0.00041761	-4.0581	-0.001823	-3.1284	-0.0014053	449.2160889882443	19.825	0.49388	19.592	19.374	19.868	-0.23345					29	9	4	0	0	0	0.98542	1	451	451		40.058	7.3076	1	167310			39908	179	27465	27518	45313	45313		3;4			-0.02666828668998278
LGAMQLLSN	9	Unmodified	_LGAMQLLSN_					0	0	0			REV__ENSG00000049541|ENST00000055077|RFC2	REV__ENSG00000049541|ENST00000055077|RFC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2666015625	2	473.754953	945.495352	0.83738	0.00039671	-3.9031	-0.0018491	-3.0657	-0.0014524	473.75296856718245	61.81	0.64829	61.583	61.261	61.909	-0.22663					34	16	3	0	0	0	0.024381	1	7094	7094		45.952	21.749	1	573610	+		39909	20147	27466	27519	45314	45314					0.02042425162778727
LGANKALIT	9	Unmodified	_LGANKALIT_					0	0	0		ENST00000457458.6_1_X:47088276-47088456:+|nuORF	ENST00000457458.6_1_X:47088276-47088456:+|nuORF	ENST00000457458.6_1_X:47088276-47088456:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.779296875	2	450.779285	899.544017	-0.22099	-9.9617E-05	0.37106	0.00016726	0.15007	6.7647E-05	450.7792948501405	47.873	1.0987	47.72	47.441	48.54	-0.15301					71	32	3	0	0	0	0.27161	1	4823	4823		79.451	2.1334	1	3414400			39910	14612	27467	27520	45315	45315					0.09022661794165288
LGANRPVQL	9	Unmodified	_LGANRPVQL_					0	0	0			REV__ENSG00000118946|ENST00000377918|PCDH17	REV__ENSG00000118946|ENST00000377918|PCDH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2878112792969	2	484.287808	966.561064	-0.13867	-6.7156E-05	0.088138	4.2684E-05	-0.050531	-2.4472E-05	484.2878974932932	42.541	0.99665	42.408	41.856	42.852	-0.13318					69	28	5	0	0	0	0.22754	1	3909	3909		85.359	16.573	1	4094100	+		39911	22430	27468	27521	45316	45316					0.07644582399984756
LGAPIPLSSL	10	Unmodified	_LGAPIPLSSL_					0	0	0			REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF	REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7779235839844	2	484.294768	966.574983	-0.54548	-0.00026417	-2.8735	-0.0013916	-3.419	-0.0016558	484.29308990632137	29.02	0.54595	29.099	28.905	29.451	0.079046					24	13	2	0	0	0	0.03519	1	1696	1696		23.042	0	1	586410	+		39912	33913	27469	27522	45317	45317					0.09035815108438783
LGAPRKAQ	8	Unmodified	_LGAPRKAQ_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.5206298828125	2	420.756144	839.497735	0.12738	5.3597E-05	-0.31161	-0.00013111	-0.18422	-7.7513E-05	420.7558305795048	31.812	0.38432	31.627	31.48	31.864	-0.18503					14	8	2	0	0	0	0.027866	1	2153	2153		12.959	5.2689	1	83242			39913	9241	27470	27523	45318	45318					0.07156641682740883
LGAQRFET	8	Unmodified	_LGAQRFET_					0	0	0			REV__ENST00000590834.5_1_17:42393912-42395603:+|nuORF	REV__ENST00000590834.5_1_17:42393912-42395603:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.2791748046875	2	461.243067	920.47158	-0.25206	-0.00011626	-0.14796	-6.8247E-05	-0.40002	-0.00018451	461.24297933571336	47.207	0.51601	47.266	47.069	47.585	0.059097					29	14	3	0	0	0	0.027866	1	4699	4699		33.516	12.678	1	729620	+		39914	35711	27471	27524	45319	45319					0.00816327720622212
LGAQRGRLN	9	Unmodified	_LGAQRGRLN_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2432861328125	2	492.788507	983.562461	-0.81508	-0.00040166	2.2954	0.0011311	1.4803	0.00072946	492.78930957457254	37.747	0.53747	37.779	37.525	38.062	0.032269					21	14	2	0	0	0	0.024381	1	3024	3024		37.159	5.6293	1	308290			39915	2802	27472	27525	45320	45320					0.07002216488740487
LGARARGLPAR	11	Unmodified	_LGARARGLPAR_					0	0	0			REV__ENSG00000169105|ENST00000306243|CHST14	REV__ENSG00000169105|ENST00000306243|CHST14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.3119506835938	2	569.351806	1136.68906	-0.50345	-0.00028664	0.0085209	4.8514E-06	-0.49493	-0.00028179	569.3516416248367	30.848	0.63021	30.86	30.627	31.257	0.011797					32	14	3	0	0	0	0.024768	1	2032	2032		24.519	0	1	266330	+		39916	26321	27473	27526	45321	45321					0.12618142713881753
LGARGYGGV	9	Unmodified	_LGARGYGGV_					0	0	0			REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.25653076171875	2	425.232502	848.450451	-1.1976	-0.00050925	2.4069	0.0010235	1.2093	0.00051422	425.23369968430484	35.896	0.81385	35.854	35.287	36.101	-0.042458					52	21	5	0	0	0	0.024386	1	2715	2715		25.45	0	1	624630	+		39917	30419	27474	27527	45322	45322					0.020163624117685686
LGARGYGGV	9	Unmodified	_LGARGYGGV_					0	0	0			REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	425.232502	848.450451	-0.37281	-0.00015853	1.6883	0.00071794	1.3155	0.00055941	425.23315357392744	36.089	0.40641	35.883	35.684	36.091	-0.20518	-0.036463	0.00032807	NaN	31.955	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501220	+		39918	30419	27474	27527							0.020163624117685686
LGARGYGGV	9	Unmodified	_LGARGYGGV_					0	0	0			REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	425.232502	848.450451	0.2818	0.00011983	1.3714	0.00058318	1.6532	0.00070301	425.2329529249535	36.12	0.58502	35.904	35.58	36.165	-0.21661	-0.016285	5.8547E-05	NaN	31.955	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565570	+		39919	30419	27474	27527							0.020163624117685686
LGARGYGGV	9	Unmodified	_LGARGYGGV_					0	0	0			REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	REV__ENST00000327761.7_1_3:50374719-50374857:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	425.232502	848.450451	0.94989	0.00040393	0.71431	0.00030375	1.6642	0.00070767	425.2327584692134	36.009	0.44485	35.811	35.609	36.054	-0.19829	-0.10863	-0.00050031	NaN	31.955	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398250	+		39920	30419	27474	27527							0.020163624117685686
LGARLLEP	8	Unmodified	_LGARLLEP_					0	0	0		ENST00000489010.1_1_22:30144317-30144539:-|nuORF	ENST00000489010.1_1_22:30144317-30144539:-|nuORF	ENST00000489010.1_1_22:30144317-30144539:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.7765197753906	2	434.766178	867.517802	-0.32251	-0.00014022	0.053817	2.3398E-05	-0.2687	-0.00011682	434.76627292822707	30.613	0.50228	30.369	30.122	30.624	-0.24415					16	11	2	0	0	0	0.027866	1	1976	1976		26.796	1.3459	1	113640			39921	15400	27475	27528	45323	45323					0.07874392622704818
LGARLMIL	8	Unmodified	_LGARLMIL_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7899169921875	2	443.780773	885.546994	-0.7462	-0.00033115	-4.2055	-0.0018663	-4.9517	-0.0021975	443.7789206348003	30.442	0.20675	30.264	30.203	30.41	-0.17818					6	4	2	0	0	0	0.027866	1	1954	1954		62.978	0	1	23939			39922	19034	27476	27529	45324	45324					0.09964213647333509
LGARQAGPPL	10	Unmodified	_LGARQAGPPL_					0	0	0			REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2900390625	2	490.287808	978.561064	0.61321	0.00030065	3.9638	0.0019434	4.577	0.0022441	490.28939673333764	78.158	0.80858	77.923	77.664	78.473	-0.23511					52	18	5	0	0	0	0.91051	1	9331	9331		53.351	1.0523	1	765460	+		39923	33891	27477	27530	45325	45325					0.07092582399980074
LGARRHAF	8	Unmodified	_LGARRHAF_					0	0	0		ENSG00000089116|ENST00000261731|LHX5;ENSG00000273706|ENST00000614239|LHX1	ENSG00000089116|ENST00000261731|LHX5	ENSG00000089116|ENST00000261731|LHX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.25579833984375	2	464.26721	926.519868	-0.34358	-0.00015951	-0.74801	-0.00034727	-1.0916	-0.00050679	464.2667727952688	54.818	0.68834	54.818	54.461	55.149	0					38	19	3	0	0	0	0.027866	1	5974	5974		21.702	12.88	1	489370			39924	1894	27478	27531	45326	45326					0.05366866151166505
LGARWFPK	8	Unmodified	_LGARWFPK_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79241943359375	2	487.782162	973.549771	-0.94912	-0.00046296	-4.2448	-0.0020705	-5.1939	-0.0025335	487.77995178185677	35.795	0.46333	35.795	35.531	35.994	0					26	11	3	0	0	0	0.027866	1	2815	2815		12.959	1.4482	1	337450			39925	9910	27479	27532	45327	45327					0.061938050965068214
LGASDSNEDL	10	Unmodified	_LGASDSNEDL_					0	0	0			REV__ENSG00000188771|ENST00000338832|PLET1	REV__ENSG00000188771|ENST00000338832|PLET1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.727783203125	2	510.727643	1019.44073	-0.23811	-0.00012161	1.2082	0.00061708	0.97014	0.00049548	510.72801201804344	55.098	1.1643	54.948	54.507	55.672	-0.15036					68	32	3	0	0	0	0.67706	1	6051	6051		68.787	0.30212	1	7634200	+		39926	28063	27480	27533	45328	45328					-0.06820915174944275
LGASGKHGGN	10	Unmodified	_LGASGKHGGN_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000540847.6_1_18:13088862-13124766:+|nuORF	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.27020263671875	2	449.230491	896.446428	-1.4451	-0.00064917	0.49085	0.00022051	-0.95422	-0.00042867	449.2307733764041	21.384	0.29475	21.172	20.971	21.266	-0.2128					9	5	2	0	0	0	0.03519	1	633	633		34.173	9.9698	1	14233			39927	2342	27481	27534	45329	45329					-0.0059372708195724044
LGASQQPMIW	10	Oxidation (M)	_LGASQQPM(Oxidation (M))IW_		LGASQQPM(1)IW		LGASQQPM(66)IW	0	0	1			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.782470703125	2	573.784241	1145.55393	-0.36545	-0.00020969	-2.7904	-0.0016011	-3.1559	-0.0018108	573.7827277938131	64.323	3.8502	64.131	62.696	66.546	-0.19243					217	96	4	0	0	0	0.71272	1	7295	7295		66.429	8.1994	1	6137800	+		39928	20737	27482	27535	45330	45330		636			-0.013025182627643517
LGASSLHRR	9	Unmodified	_LGASSLHRR_					0	0	0		ENST00000275732.5_1_7:100278784-100278913:-|nuORF	ENST00000275732.5_1_7:100278784-100278913:-|nuORF	ENST00000275732.5_1_7:100278784-100278913:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.77166748046875	2	498.788507	995.562461	-1.3349	-0.00066585	2.2015	0.0010981	0.86654	0.00043222	498.78981092634706	28.63	0.33267	28.385	28.202	28.534	-0.24524					10	7	2	0	0	0	0.024541	1	1702	1702		24.203	12.692	1	143380			39929	11690	27483	27536	45331	45331					0.06450216488758542
LGASVGCGEP	10	Unmodified	_LGASVGCGEP_					0	0	0			REV__ENST00000562663.5_1_19:11526701-11527560:-|nuORF	REV__ENST00000562663.5_1_19:11526701-11527560:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.63580322265625	2	445.207835	888.401117	0.21995	9.7922E-05	-0.70366	-0.00031328	-0.48372	-0.00021536	445.20748998312945	40.264	0.29015	40.264	40.024	40.314	0					11	7	2	0	0	0	0.03519	1	3490	3490		35.618	0	1	88944	+		39930	35201	27484	27537	45332	45332					-0.04754713659349363
LGATFGPLLL	10	Unmodified	_LGATFGPLLL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.77825927734375	2	501.305136	1000.59572	-0.096077	-4.8164E-05	1.932	0.00096852	1.8359	0.00092035	501.3062517916345	68.952	0.34149	68.967	68.83	69.171	0.015129					12	8	2	0	0	0	0.03519	1	8223	8223		38.806	3.6054	1	105140			39931	2702	27485	27538	45333	45333					0.09544405488099983
LGATVFLPK	9	Unmodified	_LGATVFLPK_					0	0	0			REV__DYNC2LI1|p.I257V|1|0.2|ENSG00000138036|chr2:43801676-43801676|A/G|missense_variant	REV__DYNC2LI1|p.I257V|1|0.2|ENSG00000138036|chr2:43801676-43801676|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2664489746094	2	473.292028	944.569503	0.28099	0.00013299	2.6261	0.0012429	2.9071	0.0013759	473.29308859085194	61.194	0.51644	60.98	60.795	61.311	-0.2134					19	13	2	0	0	0	0.024541	1	7066	7066		6.7355	0	1	189040	+		39932	19725	27486	27539	45334	45334					0.09500136316603403
LGAVGVGLLLG	11	Unmodified	_LGAVGVGLLLG_					0	0	0		ENST00000513372.5_1_4:2252273-2254467:-|nuORF	ENST00000513372.5_1_4:2252273-2254467:-|nuORF	ENST00000513372.5_1_4:2252273-2254467:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.79803466796875	2	484.810585	967.606617	1.667	0.0008082	2.4598	0.0011926	4.1269	0.0020008	484.81203592029874	59.281	0.17823	59.094	58.971	59.149	-0.18705					7	4	2	0	0	0	0.024791	1	6718	6718		40.573	0	1	97332			39933	15867	27487	27540	45335	45335					0.12151807862380792
LGAVHSPQT	9	Unmodified	_LGAVHSPQT_					0	0	0			REV__chr9:128635764-128636281|105|15.36|0.72|4.42|-|2|None,DYNC2I2|1	REV__chr9:128635764-128636281|105|15.36|0.72|4.42|-|2|None,DYNC2I2|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.26123046875	2	455.243067	908.47158	-0.093344	-4.2494E-05	-2.9445	-0.0013405	-3.0378	-0.001383	455.2404602073912	29.675	0.62471	29.526	29.254	29.879	-0.14952					22	14	3	0	0	0	0.024412	1	1780	1780		17.365	0	1	76244	+		39934	19475	27488	27541	45336	45336					0.013683277206155253
LGAVLRRL	8	Unmodified	_LGAVLRRL_					0	0	0		ENST00000264203.7_1_1:19665365-19665608:-|nuORF	ENST00000264203.7_1_1:19665365-19665608:-|nuORF	ENST00000264203.7_1_1:19665365-19665608:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.2739562988281	2	449.303262	896.59197	-0.092306	-4.1473E-05	-3.1474	-0.0014142	-3.2398	-0.0014556	449.3020682325891	56.745	0.29283	56.745	56.643	56.936	0					10	8	2	0	0	0	0.027866	1	6357	6357		44.531	9.3304	1	74255			39935	11554	27489	27542	45337	45337					0.1395378050489171
LGAVMPRL	8	Unmodified	_LGAVMPRL_					0	0	0		ENST00000443084.1_1_2:200524349-200524604:+|nuORF;nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1	ENST00000443084.1_1_2:200524349-200524604:+|nuORF	ENST00000443084.1_1_2:200524349-200524604:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.27642822265625	2	428.757298	855.500044	0.30867	0.00013234	-3.3544	-0.0014382	-3.0457	-0.0013059	428.75556756513043	42.755	0.46317	42.642	42.391	42.854	-0.11253					15	11	2	0	0	0	0.027866	1	3899	3899		21.702	0	1	136440			39936	14395	27490	27543	45338	45338					0.06651354096197792
LGAVPLEGLL	10	Unmodified	_LGAVPLEGLL_					0	0	0		ENST00000300051.8_2_16:75149460-75150658:-|nuORF	ENST00000300051.8_2_16:75149460-75150658:-|nuORF	ENST00000300051.8_2_16:75149460-75150658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.3022155761719	2	491.302593	980.590633	0.25062	0.00012313	-0.16595	-8.1533E-05	0.084664	4.1596E-05	491.3023746723937	95.339	0.94035	95.342	95.045	95.985	0.0033798					51	21	3	0	0	0	0.91051	1	12119	12119		53.351	7.3995	1	1315100			39937	11894	27491	27544	45339	45339					0.09956101625471092
LGAWASVQP	9	Unmodified	_LGAWASVQP_					0	0	0			REV__nc|ENSG00000099866|Q13477-4|MADCAM1	REV__nc|ENSG00000099866|Q13477-4|MADCAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2794189453125	2	464.747985	927.481417	-0.28445	-0.0001322	1.4495	0.00067364	1.165	0.00054145	464.7477608922093	51.826	0.66963	51.914	51.446	52.115	0.08794					34	18	3	0	0	0	0.024354	1	5462	5462		23.042	0	1	360190	+		39938	21016	27492	27545	45340	45340					0.014775157260032756
LGAWLGSPP	9	Unmodified	_LGAWLGSPP_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.27410888671875	2	449.245078	896.475603	-0.06618	-2.9731E-05	0.99811	0.0004484	0.93193	0.00041867	449.2451570273846	56.374	0.64325	56.374	56.035	56.678	0					31	17	3	0	0	0	0.016	1	6322	6322		110.34	7.5639	1	268610			39939	7488	27493	27546	45341	45341					0.02322417214327288
LGAWLGSPP	9	Unmodified	_LGAWLGSPP_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.2741394042969	2	449.245078	896.475603	-0.40653	-0.00018263	1.2328	0.00055385	0.82631	0.00037122	449.24529242736253	56.501	0.65167	56.336	56.058	56.71	-0.16431					31	17	3	0	0	0	0.015527	1	6332	6332		65.803	12.452	1	331260			39940	7488	27493	27546	45342	45342					0.02322417214327288
LGAWLGSPP	9	Unmodified	_LGAWLGSPP_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.2741394042969	2	449.245078	896.475603	-0.47661	-0.00021411	0.6949	0.00031218	0.2183	9.8069E-05	449.2452139141927	56.313	0.61922	56.41	56.033	56.652	0.097897					33	16	3	0	0	0	0.015527	1	6218	6218		76.847	13.54	1	331960			39941	7488	27493	27546	45343	45343					0.02322417214327288
LGAWLGSPP	9	Unmodified	_LGAWLGSPP_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.27392578125	2	449.245078	896.475603	0.035908	1.6131E-05	0.4143	0.00018612	0.45021	0.00020226	449.2449369920101	56.589	0.63187	56.422	56.082	56.714	-0.1672					40	15	3	0	0	0	0.022127	1	6176	6176		79.939	14.136	1	650480			39942	7488	27493	27546	45344	45344					0.02322417214327288
LGAWLGSPP	9	Unmodified	_LGAWLGSPP_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.27447509765625	2	449.245078	896.475603	0.26413	0.00011866	-0.097236	-4.3683E-05	0.16689	7.4975E-05	449.2448180409652	56.704	0.72667	56.502	56.092	56.819	-0.20209					46	18	3	0	0	0	0.017513	1	6193	6193		101.21	3.7389	1	689630			39943	7488	27493	27546	45345	45345					0.02322417214327288
LGAWLLVY	8	Unmodified	_LGAWLLVY_					0	0	0			REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.26300048828125	2	467.773471	933.53239	-0.91579	-0.00042838	-4.1386	-0.0019359	-5.0543	-0.0023643	467.77137340985047	44.015	0.49238	43.771	43.448	43.94	-0.2444					20	12	2	0	0	0	0.027866	1	4033	4033		24.504	0	1	279870	+		39944	30133	27494	27547	45346	45346					0.06296464770844068
LGCPLLVL	8	Unmodified	_LGCPLLVL_					0	0	0		ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA;nc|ENSG00000155719|Q7RTW8-3|OTOA;ENST00000563506.1_1_16:21742071-21771858:+|nuORF;nc|ENSG00000155719|Q7RTW8-2|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA	ENSG00000155719|ENST00000646100|OTOA	ENSG00000155719|ENST00000646100|OTOA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.8952331542969	2	414.2566	826.498647	-0.0033614	-1.3925E-06	4.4745	0.0018536	4.4711	0.0018522	414.2584169118829	27.431	0.44043	27.418	27.205	27.645	-0.012981					17	11	2	0	0	0	0.027866	1	1460	1460		24.504	9.8399	1	86202			39945	6483	27495	27548	45347	45347					0.07845720007446744
LGCPLTVPKHL	11	Unmodified	_LGCPLTVPKHL_					0	0	0			REV__ENSG00000170500|ENST00000393437|LONRF2	REV__ENSG00000170500|ENST00000393437|LONRF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3434448242188	2	589.341726	1176.6689	-1.3212	-0.00077864	3.3274	0.001961	2.0062	0.0011823	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0238	1	11083	11083		31.53	1.2121	1	5175100	+		39946	26479	27496	27549	45348	45348					0.08763210939059718
LGDDPVYSTG	10	Unmodified	_LGDDPVYSTG_					0	0	0			REV__ENSG00000178035|ENST00000326739|IMPDH2	REV__ENSG00000178035|ENST00000326739|IMPDH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2534790039062	2	512.235104	1022.45566	-0.33151	-0.00016981	3.2952	0.0016879	2.9637	0.0015181	512.236898233095	54.575	0.17999	54.429	54.353	54.533	-0.14609					6	4	2	0	0	0	0.03519	1	5807	5807		26.693	0	1	60314	+		39947	27160	27497	27550	45349	45349					-0.05467423306947694
LGDGRRAL	8	Unmodified	_LGDGRRAL_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.27642822265625	2	429.251226	856.487899	-0.36738	-0.0001577	-3.2569	-0.001398	-3.6243	-0.0015557	429.24984764434134	43.242	0.44219	43.016	42.833	43.275	-0.22597					18	11	2	0	0	0	0.027866	1	3948	3948		93.195	35.384	1	353980	+		39948	20637	27498	27551	45350	45350					0.05391453677361824
LGDKAARAV	9	Unmodified	_LGDKAARAV_					0	0	0		ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.76678466796875	2	450.766709	899.518865	0.059998	2.7045E-05	-0.50959	-0.00022971	-0.44959	-0.00020266	450.7664617180392	35.299	0.74337	35.084	34.753	35.496	-0.21555					57	18	4	0	0	0	0.33245	1	2662	2662		71.296	0	1	8007400			39949	3669	27499	27552	45351	45351					0.06508606991599208
LGDLCQFDHG	10	Unmodified	_LGDLCQFDHG_					0	0	0		ENSG00000091009|ENST00000265271|RBM27;RBM27|p.S846Ffs*34|1|0.35|ENSG00000091009|chr5:146269428-146269429|-/T|frameshift_variant	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.224853515625	2	552.742573	1103.47059	-0.22355	-0.00012357	-1.8244	-0.0010084	-2.048	-0.001132	552.7394276966047	30.727	0.34014	30.577	30.386	30.727	-0.14952					13	7	3	0	0	0	0.03519	1	1947	1947		27.882	5.9224	1	42073			39950	1947	27500	27553	45352	45352					-0.07700254710607624
LGDLRGLIL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LGDLRGLIL_					1	0	0		ENST00000532962.5_1_11:43902551-43902605:+|nuORF	ENST00000532962.5_1_11:43902551-43902605:+|nuORF	ENST00000532962.5_1_11:43902551-43902605:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3136901855469	2	506.313492	1010.61243	0.8506	0.00043067	-2.9547	-0.001496	-2.1041	-0.0010653	506.3128794979483	64.116	0.91779	64.116	63.736	64.654	0					59	24	4	0	0	0	0.62163	1	7555	7555		51.335	10.557	1	3461800			39951	16305	27501	27554	45353	45353					0.10754906374040729
LGDLRGLIL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LGDLRGLIL_					1	0	0		ENST00000532962.5_1_11:43902551-43902605:+|nuORF	ENST00000532962.5_1_11:43902551-43902605:+|nuORF	ENST00000532962.5_1_11:43902551-43902605:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.31353759765625	2	506.313492	1010.61243	-0.54367	-0.00027527	-1.5296	-0.00077445	-2.0733	-0.0010497	506.31352244677424	64.414	1.1433	64.151	63.578	64.722	-0.2626					79	30	4	0	0	0	0.4752	1	7561	7561		60.972	6.1956	1	3363100			39952	16305	27501	27554	45354	45354					0.10754906374040729
LGDPHCRPV	9	Unmodified	_LGDPHCRPV_					0	0	0		ENST00000377921.7_1_10:16737048-16737102:-|nuORF	ENST00000377921.7_1_10:16737048-16737102:-|nuORF	ENST00000377921.7_1_10:16737048-16737102:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.29736328125	2	497.250369	992.486184	0.6801	0.00033818	1.3357	0.0006642	2.0158	0.0010024	497.24777668518493	70.134	0.32655	69.841	69.593	69.92	-0.29291					12	7	3	0	0	0	0.02435	1	8402	8402		42.396	9.5837	1	64435			39953	13219	27502	27555	45355	45355					-0.010359234028896935
LGDRPIPVT	9	Unmodified	_LGDRPIPVT_					0	0	0		ENST00000472677.1_1_22:50635751-50636018:+|nuORF;ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000472677.1_1_22:50635751-50636018:+|nuORF	ENST00000472677.1_1_22:50635751-50636018:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2950439453125	2	484.282192	966.549831	-0.42032	-0.00020355	1.9668	0.00095248	1.5465	0.00074893	484.28343517626456	85.426	0.74635	85.368	84.857	85.603	-0.05761					30	17	3	0	0	0	0.023454	1	10650	10650		82.241	0	1	80448			39954	8064	27503	27556	45356	45356					0.06521760305861335
LGEDIDIIF	9	Unmodified	_LGEDIDIIF_					0	0	0		nc|ENSG00000091106|Q9NPP4-3|NLRC4;NLRC4|p.F931Lfs*6|1|0.35|ENSG00000091106|chr2:32224755-32224755|A/-|frameshift_variant;ENSG00000091106|ENST00000402280|NLRC4	nc|ENSG00000091106|Q9NPP4-3|NLRC4	nc|ENSG00000091106|Q9NPP4-3|NLRC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7848510742188	2	517.773865	1033.53318	0.532	0.00027546	-4.3737	-0.0022646	-3.8417	-0.0019891	517.7718891130862	72.369	0.70426	72.088	71.882	72.586	-0.28124					22	17	2	0	0	0	0.024386	1	8770	8770		52.299	18.784	1	120820			39955	1950	27504	27557	45357	45357					0.017752146292423276
LGEGGILSTV	10	Unmodified	_LGEGGILSTV_					0	0	0		nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7446594238281	2	473.266207	944.517862	0.089254	4.2241E-05	-0.053291	-2.5221E-05	0.035963	1.702E-05	473.26591527913916	48.921	0.35942	48.768	48.611	48.97	-0.15277					25	9	3	0	0	0	0.03519	1	5021	5021		60.972	28.16	1	858780			39956	9527	27505	27558	45358	45358					0.043383478320379254
LGEGRPPLP	9	Unmodified	_LGEGRPPLP_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|6|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.26934814453125	2	468.269084	934.523616	-0.28939	-0.00013551	0.32376	0.00015161	0.034369	1.6094E-05	468.26914846799536	43.033	1.1605	43.033	42.534	43.695	0					95	31	4	0	0	0	0.33245	2	4022	4022;4037		71.296	7.9894	1	6354200			39957	17849	27506	27559	45359;45360	45359					0.053734911343553904
LGEGRPPLP	9	Unmodified	_LGEGRPPLP_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|6|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.2689514160156	2	468.269084	934.523616	-0.048047	-2.2499E-05	0.071986	3.3709E-05	0.02394	1.121E-05	468.26901432019275	43.181	1.1925	43.042	42.558	43.751	-0.13929					103	32	4	0	0	0	0.17455	2	3988	3988;4041		94.006	11.701	1	6396800			39958	17849	27506	27559	45361;45362	45361					0.053734911343553904
LGEGRPPLP	9	Unmodified	_LGEGRPPLP_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|6|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|71|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2693786621094	2	468.269084	934.523616	1.0324	0.00048344	-1.0938	-0.00051218	-0.06136	-2.8733E-05	468.2684472312194	43.079	1.2005	43.11	42.646	43.847	0.030827					97	32	4	0	0	0	0.17455	2	3968	3968;3992		94.006	8.9393	1	5775700			39959	17849	27506	27559	45363;45364	45363					0.053734911343553904
LGELPELLI	9	Unmodified	_LGELPELLI_					0	0	0			REV__ENST00000519932.5_1_6:112575345-112575919:-|nuORF	REV__ENST00000519932.5_1_6:112575345-112575919:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.8016052246094	2	498.802426	995.590298	0.4183	0.00020865	-0.59098	-0.00029478	-0.17268	-8.6134E-05	498.8020077992988	99.748	0.53442	99.743	99.477	100.01	-0.0050888					27	12	4	0	0	0	0.83071	1	12684	12684		37.159	0	1	421810	+		39960	34277	27507	27560	45365	45365					0.0923268190562112
LGEPPPPVE	9	Unmodified	_LGEPPPPVE_					0	0	0			REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.2691955566406	2	467.74765	933.480748	1.0804	0.00050534	1.3961	0.00065304	2.4765	0.0011584	467.7478445513489	43.051	0.58279	43.082	42.83	43.413	0.030827					40	15	4	0	0	0	0.024354	1	3932	3932		38.806	0	1	657070	+		39961	21726	27508	27561	45366	45366					0.011346762862785909
LGEREAGGSR	10	Unmodified	_LGEREAGGSR_					0	0	0		ENST00000361243.6_1_15:86124766-86124817:+|nuORF	ENST00000361243.6_1_15:86124766-86124817:+|nuORF	ENST00000361243.6_1_15:86124766-86124817:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2996826171875	2	516.265062	1030.51557	-0.083286	-4.2998E-05	-4.2025	-0.0021696	-4.2858	-0.0022126	516.76486423419	104.17	0.17314	104.17	104.02	104.19	0.0031357					6	3	2	0	0	0	0.03519	1	13333	13333		39.253	0	1	27345			39962	12788	27509	27562	45367	45367					0.001533121469492471
LGERGHVL	8	Unmodified	_LGERGHVL_					0	0	0			REV__ENSG00000139131|ENST00000324868|YARS2	REV__ENSG00000139131|ENST00000324868|YARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7660827636719	2	440.753601	879.49265	-0.1056	-4.6544E-05	-2.3745	-0.0010466	-2.4801	-0.0010931	440.7523646765904	37.327	0.49847	37.134	36.851	37.35	-0.193					21	12	3	0	0	0	0.027866	1	2992	2992		47.916	0	1	225920	+		39963	23915	27510	27563	45368	45368					0.048083378201340565
LGERLVLLP	9	Unmodified	_LGERLVLLP_					0	0	0			REV__ENST00000394906.6_1_17:27206788-27206950:-|nuORF	REV__ENST00000394906.6_1_17:27206788-27206950:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3237609863281	2	505.32386	1008.63317	-0.021531	-1.088E-05	-1.0461	-0.00052863	-1.0676	-0.00053951	505.32367507392587	79.153	5.1565	79.172	78.693	83.85	0.018677					323	123	5	0	0	0	0.4752	1	9754	9754		60.972	6.1956	1	98007000	+		39964	31680	27511	27564	45369	45369					0.12919496753693238
LGERNTKLY	9	Unmodified	_LGERNTKLY_					0	0	0			REV__DHCR24-PCNXL2|1|fusion	REV__DHCR24-PCNXL2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.303466796875	2	547.303655	1092.59276	-0.31394	-0.00017182	0.77694	0.00042522	0.463	0.0002534	547.3036385442949	37.203	1.0057	36.994	36.685	37.691	-0.2092					78	25	5	0	0	0	0.77768	1	2988	2988		40.778	6.6056	1	3623500	+		39965	19670	27512	27565	45370	45370					0.050165303632638825
LGERTPVAV	9	Unmodified	_LGERTPVAV_					0	0	0			REV__ENST00000260447.5_1_15:41056290-41058050:+|nuORF	REV__ENST00000260447.5_1_15:41056290-41058050:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2745361328125	2	471.274367	940.53418	0.23728	0.00011183	-0.35717	-0.00016832	-0.11989	-5.6499E-05	471.2741146106928	42.31	0.99088	42.178	41.789	42.78	-0.13219					71	28	4	0	0	0	0.55828	1	3861	3861		55.504	2.1528	1	7100100	+		39966	29601	27513	27566	45371	45371					0.0615347378881097
LGEVRTHII	9	Unmodified	_LGEVRTHII_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.780029296875	2	519.308741	1036.60293	-1.3308	-0.00069107	-0.58662	-0.00030464	-1.9174	-0.00099571	519.308033142384	51.61	0.33916	51.697	51.375	51.715	0.087006					16	9	2	0	0	0	0.024438	1	5400	5400		52.937	20.982	1	641440			39967	6595	27514	27567	45372	45372					0.08609138088513646
LGFHLTVCI	9	Unmodified	_LGFHLTVCI_					0	0	0		ENST00000348943.7_1_19:8553882-8553954:+|nuORF	ENST00000348943.7_1_19:8553882-8553954:+|nuORF	ENST00000348943.7_1_19:8553882-8553954:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2925720214844	2	501.775688	1001.53682	-0.4739	-0.00023779	0.96141	0.00048241	0.48751	0.00024462	502.2757852531233	57.288	0.61551	57.121	56.714	57.33	-0.1672					19	16	2	0	0	0	0.024466	1	6274	6274		25.45	6.0902	1	433160			39968	12584	27515	27568	45373	45373					0.036116059221058094
LGFIILGSLC	10	Unmodified	_LGFIILGSLC_					0	0	0		ENSG00000108878|ENST00000226021|CACNG1	ENSG00000108878|ENST00000226021|CACNG1	ENSG00000108878|ENST00000226021|CACNG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2975463867188	2	518.298996	1034.58344	-0.17627	-9.1363E-05	-3.4613	-0.001794	-3.6376	-0.0018853	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.52589	1	13118	13118		85.359	0	1	66134000			39969	2944	27516	27569	45374	45374					0.06753045753384868
LGFILGALL	9	Unmodified	_LGFILGALL_					0	0	0			REV__nc|ENSG00000091137|O43511-2|SLC26A4	REV__nc|ENSG00000091137|O43511-2|SLC26A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.26788330078125	2	458.796946	915.57934	-0.29287	-0.00013437	0.57557	0.00026407	0.2827	0.0001297	458.79713858253854	75.312	0.45879	75.053	74.821	75.279	-0.25866					16	10	3	0	0	0	0.023868	1	8893	8893		39.021	0	1	115800	+		39970	20902	27517	27570	45375	45375					0.11817324321987144
LGFLGPLGIY	10	Unmodified	_LGFLGPLGIY_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3027954101562	2	525.305136	1048.59572	-0.2701	-0.00014188	-4.3225	-0.0022706	-4.5926	-0.0024125	525.3029431404988	63.545	1.2971	63.317	62.769	64.066	-0.22773					87	32	4	0	0	0	0.72076	1	7180	7180		65.897	2.3636	1	3780400	+		39971	28222	27518	27571	45376	45376					0.07336405488103992
LGFLLLLL	8	Unmodified	_LGFLLLLL_					0	0	0		ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000183780|Q8IY50|SLC35F3;MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|8|2|sense	ENSG00000183780|ENST00000366618|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7667541503906	2	451.30969	900.604826	-0.28468	-0.00012848	-4.0846	-0.0018434	-4.3693	-0.0019719	451.30771058374756	34.598	0.92305	34.391	34.16	35.083	-0.20696					45	22	3	0	0	0	0.027866	1	2655	2655		24.504	0	1	302050			39972	9276	27519	27572	45377	45377					0.15054798844414563
LGFLLLLL	8	Unmodified	_LGFLLLLL_					0	0	0		ENSG00000183780|ENST00000366618|SLC35F3;nc|ENSG00000183780|Q8IY50|SLC35F3;MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|8|2|sense	ENSG00000183780|ENST00000366618|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.30969	900.604826	0.22619	0.00010208	-4.7648	-0.0021504	-4.5387	-0.0020483	451.3074536399911	34.591	0.7625	34.367	34.179	34.942	-0.22412	-0.017174	-0.00049004	NaN	24.504	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345490			39973	9276	27519	27572							0.15054798844414563
LGFLWLLGL	9	Unmodified	_LGFLWLLGL_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|27	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2997436523438	2	516.318046	1030.62154	-0.084852	-4.3811E-05	1.6445	0.0008491	1.5597	0.00080529	516.3193843335362	104.08	0.21384	104.08	103.98	104.19	0.0031357					6	4	2	0	0	0	0.023868	1	13310	13310		60.404	10.962	1	30617	+		39974	19468	27520	27573	45378	45378					0.10745299730388069
LGFLWLLGL	9	Unmodified	_LGFLWLLGL_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|27	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2997436523438	2	516.318046	1030.62154	-0.32386	-0.00016721	-0.10229	-5.2816E-05	-0.42615	-0.00022003	516.3185368661107	104.02	0.20094	103.89	103.79	103.99	-0.12927					6	4	2	0	0	0	0.023092	1	12948	12948		85.909	29.188	1	39517	+		39975	19468	27520	27573	45379	45379					0.10745299730388069
LGFLWLPSL	9	Unmodified	_LGFLWLPSL_					0	0	0		ENST00000528292.5_1_11:122931947-122932821:-|nuORF;ENST00000533540.5_1_11:122932003-122932830:-|nuORF	ENST00000528292.5_1_11:122931947-122932821:-|nuORF	ENST00000528292.5_1_11:122931947-122932821:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3248291015625	2	523.307678	1044.6008	0.40283	0.00021081	-3.7735	-0.0019747	-3.3706	-0.0017639	523.3056645871882	79.673	0.6684	79.426	79.112	79.78	-0.2465					25	15	2	0	0	0	0.024386	1	9479	9479		42.474	1.9018	1	222940			39976	16178	27521	27574	45380	45380					0.0802870935071951
LGFMILFV	8	Unmodified	_LGFMILFV_					0	0	0			REV__ENSG00000143815|ENST00000272163|LBR	REV__ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2726135253906	2	470.27225	938.529947	-0.16956	-7.9741E-05	-0.2183	-0.00010266	-0.38787	-0.0001824	470.2721071142879	88.694	1.1279	88.556	88.274	89.402	-0.13743					51	26	3	0	0	0	0.9599	1	10804	10804		43.626	10.133	1	387220	+		39977	24286	27522	27575	45381	45381					0.05822293041535431
LGFNKRAID	9	Unmodified	_LGFNKRAID_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENSG00000078596|ENST00000373298|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2997436523438	2	517.293091	1032.57163	-0.09768	-5.0529E-05	-3.9247	-0.0020302	-4.0224	-0.0020807	517.7936288027355	104.26	0.1683	104.26	104.15	104.32	0.0031433					6	3	2	0	0	0	0.024261	1	13344	13344		54.776	5.3348	1	34833			39978	1639	27523	27576	45382	45382					0.05664565054416926
LGFTADEKV	9	Unmodified	_LGFTADEKV_					0	0	0		ENSG00000264424|ENST00000255381|MYH4;MYH4|p.Q1510Nfs*7|1|0.33|ENSG00000264424|chr17:10448621-10448621|G/-|frameshift_variant	ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.8288269042969	2	490.258382	978.502212	-0.4907	-0.00024057	1.5865	0.00077777	1.0958	0.0005372	490.25895394483155	66.369	0.26925	66.399	66.296	66.565	0.030106					13	9	2	0	0	0	0.024025	1	7825	7825		71.877	8.5712	1	927210			39979	10964	27524	27577	45383	45383					0.012100613149982564
LGFTKRVEL	9	Unmodified	_LGFTKRVEL_					0	0	0		nc|ENSG00000196844|Q6UY27-2|PATE2;ENSG00000196844|ENST00000358524|PATE2	nc|ENSG00000196844|Q6UY27-2|PATE2	nc|ENSG00000196844|Q6UY27-2|PATE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8172607421875	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.82115	1	10809	10809		37.812	1.3648	1	5249700			39980	9927	27525	27578	45384	45384					0.09498308748334239
LGFTYEIR	8	Unmodified	_LGFTYEIR_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.7691955566406	2	499.768917	997.523281	0.21837	0.00010914	0.067566	3.3767E-05	0.28594	0.0001429	499.7688237935284	19.566	0.54169	19.405	19.183	19.725	-0.16079					24	10	3	0	0	0	1.0106	1	451	451		35.618	2.8059	1	337950			39981	7277	27526	27579	45385	45385					0.024420714145207967
LGFVIMPYSI	10	Unmodified	_LGFVIMPYSI_					0	0	0		nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.73779296875	2	570.312103	1138.60965	-0.42556	-0.0002427	1.6923	0.00096515	1.2668	0.00072245	570.313146281856	57.797	0.31418	57.563	57.349	57.664	-0.23363					10	7	2	0	0	0	0.03519	1	6309	6309		11.511	0	1	131260			39982	18825	27527	27580	45386	45386					0.04589314924874088
LGFVVRPHEA	10	Unmodified	_LGFVVRPHEA_					0	0	0		ENST00000396465.5_1_8:74206146-74206593:-|nuORF	ENST00000396465.5_1_8:74206146-74206593:-|nuORF	ENST00000396465.5_1_8:74206146-74206593:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.8160400390625	2	562.81419	1123.61383	0.45903	0.00025835	-1.704	-0.00095906	-1.245	-0.00070071	562.8131206602005	83.317	0.84134	83.148	82.819	83.66	-0.16915					57	19	4	0	0	0	0.60198	1	10051	10051		76.774	3.8949	1	927420			39983	13556	27528	27581	45387	45387					0.05696540462804478
LGGAGLRPL	9	Unmodified	_LGGAGLRPL_					0	0	0			REV__ENSG00000204314|ENST00000211413|PRRT1	REV__ENSG00000204314|ENST00000211413|PRRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.2657775878906	2	427.266345	852.518136	0.057993	2.4779E-05	0.32013	0.00013678	0.37812	0.00016156	427.2663046027323	43.394	0.84662	43.281	42.962	43.809	-0.11253					56	22	3	0	0	0	0.88411	1	3998	3998		33.516	1.5607	1	3014500	+		39984	28590	27529	27582	45388	45388					0.08597812342566158
LGGAGLRPL	9	Unmodified	_LGGAGLRPL_					0	0	0			REV__ENSG00000204314|ENST00000211413|PRRT1	REV__ENSG00000204314|ENST00000211413|PRRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.26617431640625	2	427.266345	852.518136	-0.4147	-0.00017719	0.79585	0.00034004	0.38115	0.00016285	427.26653747023056	43.572	0.80826	43.335	42.989	43.797	-0.23737					50	21	3	0	0	0	0.64155	1	3990	3990		50.025	12.996	1	3854000	+		39985	28590	27529	27582	45389	45389					0.08597812342566158
LGGAGLRPL	9	Unmodified	_LGGAGLRPL_					0	0	0			REV__ENSG00000204314|ENST00000211413|PRRT1	REV__ENSG00000204314|ENST00000211413|PRRT1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	427.266345	852.518136	0.057993	2.4779E-05	0.32013	0.00013678	0.37812	0.00016156	427.2663046027323	43.394	0.84662	43.281	42.962	43.809	-0.11253	-0.049246	-0.00030657	NaN	50.025	56	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3014500	+		39986	28590	27529	27582							0.08597812342566158
LGGAGLRPL	9	Unmodified	_LGGAGLRPL_					0	0	0			REV__ENSG00000204314|ENST00000211413|PRRT1	REV__ENSG00000204314|ENST00000211413|PRRT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.266345	852.518136	-0.53417	-0.00022823	1.0001	0.00042731	0.46595	0.00019908	427.26672825523553	43.595	0.79646	43.376	43.068	43.864	-0.21939	0.045179	0.00027449	NaN	50.025	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6044300	+		39987	28590	27529	27582							0.08597812342566158
LGGALSLLAL	10	Unmodified	_LGGALSLLAL_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.297607421875	2	464.29731	926.580068	0.51598	0.00023957	-0.32995	-0.0001532	0.18603	8.6372E-05	464.29701225148847	84.894	0.78568	84.894	84.587	85.372	0					48	18	3	0	0	0	1.0781	1	10625	10625		35.618	0	1	2026400			39988	9388	27530	27583	45390	45390					0.1138411897103424
LGGAQLGLLAP	11	Unmodified	_LGGAQLGLLAP_					0	0	0		nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000593609.1_1_19:42410802-42411562:+|nuORF	nc|ENSG00000076928|Q92888-4|ARHGEF1	nc|ENSG00000076928|Q92888-4|ARHGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.26605224609375	2	505.305667	1008.59678	-0.82004	-0.00041437	0.87494	0.00044211	0.054902	2.7742E-05	505.3062153176195	63.067	0.73362	63.067	62.531	63.265	0					26	18	3	0	0	0	0.024759	1	7303	7303		34.173	11.593	1	369950			39989	18084	27531	27584	45391	45391					0.09282619856981
LGGAVSPGLL	10	Unmodified	_LGGAVSPGLL_					0	0	0			REV__ENST00000479851.1_1_22:32026643-32026745:-|nuORF	REV__ENST00000479851.1_1_22:32026643-32026745:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7881164550781	2	442.26601	882.517468	0.86915	0.0003844	0.074319	3.2869E-05	0.94347	0.00041727	442.2661051924069	40.856	0.46856	40.733	40.547	41.016	-0.12317					20	12	2	0	0	0	0.03519	1	3619	3619		19.997	0.89325	1	190720	+		39990	33410	27532	27585	45392	45392					0.07150972902854846
LGGAVYVYLN	10	Unmodified	_LGGAVYVYLN_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.5584106445312	2	534.78985	1067.56515	-1.4658	-0.00078388	1.9698	0.0010534	0.504	0.00026953	534.7918981278574	35.551	0.39535	35.529	35.233	35.629	-0.021763					13	9	2	0	0	0	0.03519	1	2692	2692		21.96	0	1	132220			39991	4892	27533	27586	45393	45393					0.034066271030496864
LGGEGWLGL	9	Unmodified	_LGGEGWLGL_					0	0	0		ENST00000400237.2_1_22:32598639-32598816:-|nuORF	ENST00000400237.2_1_22:32598639-32598816:-|nuORF	ENST00000400237.2_1_22:32598639-32598816:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7670593261719	2	451.242535	900.470518	-0.35384	-0.00015967	-4.1083	-0.0018539	-4.4622	-0.0020135	451.24049831189643	35.585	0.43054	35.373	35.154	35.584	-0.21246					22	10	3	0	0	0	0.02309	1	2680	2680		68.485	24.859	1	348870			39992	13658	27534	27587	45394	45394					0.016301133517231392
LGGEHAAVLVV	11	Unmodified	_LGGEHAAVLVV_					0	0	0		ENST00000478193.5_1_10:73975797-73990192:+|nuORF	ENST00000478193.5_1_10:73975797-73990192:+|nuORF	ENST00000478193.5_1_10:73975797-73990192:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7813720703125	2	532.808574	1063.60259	0.021819	1.1625E-05	0.43997	0.00023442	0.46179	0.00024605	532.8087008045874	59.324	0.48412	59.143	58.911	59.395	-0.18134					22	11	3	0	0	0	0.024738	1	6578	6578		34.173	0	1	414820			39993	15134	27535	27588	45395	45395					0.07333718368658992
LGGFLIVFM	9	Oxidation (M)	_LGGFLIVFM(Oxidation (M))_		LGGFLIVFM(1)		LGGFLIVFM(60)	0	0	1		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.77899169921875	2	506.780439	1011.54633	-0.020235	-1.0255E-05	-3.4453	-0.001746	-3.4656	-0.0017563	506.778561137882	98.7	1.3456	98.7	98.233	99.578	0					62	30	3	0	0	0	0.48384	1	12612	12612		60.404	8.1045	1	375090			39994	7526	27536	27589	45396	45396		311			0.041013742076529525
LGGFLIVFM	9	Oxidation (M)	_LGGFLIVFM(Oxidation (M))_		LGGFLIVFM(1)		LGGFLIVFM(49)	0	0	1		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.77880859375	2	506.780439	1011.54633	0.5415	0.00027442	-4.2175	-0.0021373	-3.676	-0.0018629	506.77823255742265	98.816	1.2162	98.812	98.307	99.523	-0.0038834					63	27	3	0	0	0	0.65391	2	12553	12553;12577		49.211	10.189	1	480250			39995	7526	27536	27589	45397;45398	45397		311			0.041013742076529525
LGGFLRNI	8	Unmodified	_LGGFLRNI_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;nc|ENSG00000172803|Q86XE0-2|SNX32;ENST00000530101.5_1_11:65601488-65618753:+|nuORF;ENST00000526972.5_1_11:65617878-65618753:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.6363830566406	2	445.266345	888.518136	-0.076259	-3.3956E-05	-0.77143	-0.00034349	-0.84769	-0.00037745	445.26566686011705	41.008	0.98405	41.031	40.797	41.781	0.023006					40	27	2	0	0	0	0.027866	1	3560	3560		8.2313	0.54101	1	192630			39996	8311	27537	27590	45399	45399					0.0694181234256348
LGGFLRNI	8	Unmodified	_LGGFLRNI_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;nc|ENSG00000172803|Q86XE0-2|SNX32;ENST00000530101.5_1_11:65601488-65618753:+|nuORF;ENST00000526972.5_1_11:65617878-65618753:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	445.266345	888.518136	0.17191	7.6544E-05	-0.6568	-0.00029245	-0.4849	-0.00021591	445.2658236679703	40.937	0.73939	40.937	40.587	41.326	0	-0.013354	0.0002558	NaN	8.2313	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265000			39997	8311	27537	27590							0.0694181234256348
LGGFLRNI	8	Unmodified	_LGGFLRNI_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;nc|ENSG00000172803|Q86XE0-2|SNX32;ENST00000530101.5_1_11:65601488-65618753:+|nuORF;ENST00000526972.5_1_11:65617878-65618753:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	445.266345	888.518136	0.67103	0.00029879	-1.3522	-0.00060207	-0.68113	-0.00030328	445.2654544655193	41.006	0.81143	40.883	40.618	41.43	-0.12317	-0.067515	-0.00036343	NaN	8.2313	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226860			39998	8311	27537	27590							0.0694181234256348
LGGFWKAL	8	Unmodified	_LGGFWKAL_					0	0	0		ENST00000407418.7_1_22:39261880-39262189:-|nuORF	ENST00000407418.7_1_22:39261880-39262189:-|nuORF	ENST00000407418.7_1_22:39261880-39262189:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.2328796386719	2	446.257988	890.501424	-0.81473	-0.00036358	-3.1503	-0.0014059	-3.9651	-0.0017694	446.256326686006	37.897	0.94199	37.814	37.108	38.05	-0.082516					33	26	2	0	0	0	0.027866	1	3149	3149		26.796	1.3459	1	215180			39999	13746	27538	27591	45400	45400					0.051793114566066834
LGGGLLNLN	9	Unmodified	_LGGGLLNLN_					0	0	0		ENST00000586314.5_1_18:31432808-31708839:-|nuORF;nc|ENSG00000101746|O94818-2|NOL4;nc|ENSG00000101746|O94818-3|NOL4;ENSG00000101746|ENST00000261592|NOL4;nc|ENSG00000101746|O94818-4|NOL4	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7798156738281	2	435.75581	869.497067	-0.12839	-5.5949E-05	0.12034	5.2439E-05	-0.0080546	-3.5098E-06	435.75578037337414	38.888	0.9658	38.888	38.597	39.562	0					44	26	3	0	0	0	0.024294	1	3329	3329		29.15	5.6269	1	1447100			40000	2345	27539	27592	45401	45401					0.0570980224304094
LGGHIRLL	8	Unmodified	_LGGHIRLL_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7527770996094	2	439.782162	877.549771	2.2192	0.00097595	-2.3488	-0.001033	-0.12967	-5.7026E-05	439.78100553912276	23.52	0.4486	23.329	23.124	23.572	-0.19117					19	10	2	0	0	0	0.027866	1	906	906		28.254	6.5519	1	190960	+		40001	36588	27540	27593	45402	45402					0.1060980509652154
LGGIGDIANI	10	Unmodified	_LGGIGDIANI_					0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2712707519531	2	471.766374	941.518196	0.82672	0.00039002	-1.5591	-0.00073552	-0.73235	-0.0003455	471.76552106081306	64.318	0.70957	64.363	64.153	64.862	0.045502					23	18	2	0	0	0	0.03519	1	7545	7545		29.17	0	1	219210	+		40002	28990	27541	27594	45403	45403					0.04509767551905952
LGGINELKVF	10	Unmodified	_LGGINELKVF_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.31689453125	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0719	1	11110	11110		36.447	1.2947	1	12792000			40003	8414	27542	27595	45404	45404					0.08222889028456848
LGGKGCIPL	9	Unmodified	_LGGKGCIPL_					0	0	0		ENST00000527113.1_1_11:558894-559837:+|nuORF;ENST00000527620.5_1_11:559022-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	ENST00000527113.1_1_11:558894-559837:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.276611328125	2	429.249306	856.484059	0.0085851	3.6851E-06	-0.16068	-6.8972E-05	-0.1521	-6.5287E-05	429.2489040406546	43.156	0.79543	42.918	42.452	43.247	-0.23736					40	20	3	0	0	0	0.020485	1	3933	3933		76.847	13.54	1	279020			40004	16140	27543	27596	45405	45405					0.05007647859304143
LGGKSPQSAA	10	Unmodified	_LGGKSPQSAA_					0	0	0			REV__nc|ENSG00000141971|Q96EY5-3|MVB12A	REV__nc|ENSG00000141971|Q96EY5-3|MVB12A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.80517578125	2	458.248349	914.482145	0.37919	0.00017376	-0.44235	-0.00020271	-0.063161	-2.8943E-05	458.2481061887716	22.925	0.46695	22.723	22.453	22.92	-0.20193					12	9	2	0	0	0	0.03519	1	886	886		24.519	0	1	25521	+		40005	24128	27544	27597	45406	45406					0.021483103750369992
LGGLGIIGPN	10	Unmodified	_LGGLGIIGPN_					0	0	0			REV__nc|ENSG00000166821|O75192-2|PEX11A	REV__nc|ENSG00000166821|O75192-2|PEX11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.75830078125	2	455.77146	909.528367	-0.043582	-1.9863E-05	-0.038574	-1.7581E-05	-0.082156	-3.7444E-05	455.7705649357419	33.325	0.48171	33.094	32.916	33.397	-0.23107					14	11	2	0	0	0	0.03519	1	2398	2398		29.15	1.2673	1	64718	+		40006	26060	27545	27598	45407	45407					0.06998375277123614
LGGLHFPK	8	Unmodified	_LGGLHFPK_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000442555.5_1_22:29904448-29924274:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7718811035156	2	434.755613	867.496673	-0.74101	-0.00032216	3.9211	0.0017047	3.18	0.0013825	434.7574825678226	25.36	0.23072	25.326	25.121	25.351	-0.034397					11	5	3	0	0	0	0.027866	1	1161	1161		12.959	0	1	257560			40007	2170	27546	27599	45408	45408					0.05762427313845819
LGGLHQNI	8	Unmodified	_LGGLHQNI_					0	0	0			REV__ENST00000392251.3_1_12:66669957-66670044:-|nuORF	REV__ENST00000392251.3_1_12:66669957-66670044:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2299499511719	2	426.240327	850.466101	0.21126	9.0049E-05	4.1059	0.0017501	4.3172	0.0018401	426.2419258232009	28.862	1.0354	28.943	28.533	29.569	0.080812					37	25	2	0	0	0	0.027866	1	1754	1754		25.45	0	1	1021400	+		40008	31598	27547	27600	45409	45409					0.0348864892880556
LGGLSSFAWLS	11	Unmodified	_LGGLSSFAWLS_					0	0	0			REV__ENST00000594248.1_1_19:58694871-58695198:+|nuORF	REV__ENST00000594248.1_1_19:58694871-58695198:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.291015625	2	569.300581	1136.58661	-1.2304	-0.00070045	0.8778	0.00049973	-0.35256	-0.00020071	569.3009057336295	74.052	0.68532	74.062	73.837	74.522	0.0096512					24	15	2	0	0	0	0.024727	1	8955	8955		39.253	15.73	1	407400	+		40009	35773	27548	27601	45410	45410					0.02378012131748619
LGGLTAPTDR	10	Unmodified	_LGGLTAPTDR_					0	0	0		ENSG00000270806|ENST00000605587|C17orf50	ENSG00000270806|ENST00000605587|C17orf50	ENSG00000270806|ENST00000605587|C17orf50	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7721252441406	2	500.774731	999.534909	0.87233	0.00043684	-2.9318	-0.0014682	-2.0595	-0.0010313	500.77279161904937	106.48	0.30865	106.48	106.29	106.6	0					12	8	2	0	0	0	1.0122	1	13667	13667		44.377	1.5129	1	125630			40010	11003	27549	27602	45411	45411					0.035122684378507074
LGGLYLEDD	9	Unmodified	_LGGLYLEDD_					0	0	0			REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2996826171875	2	497.740022	993.465492	0.92412	0.00045997	1.787	0.00088947	2.7111	0.0013494	497.7413496517845	82.257	0.3326	82.147	81.961	82.294	-0.11006					10	7	2	0	0	0	0.023775	1	10212	10212		30.504	0	1	70037	+		40011	27301	27550	27603	45412	45412					-0.031502353015753215
LGGPAGRLRA	10	Unmodified	_LGGPAGRLRA_					0	0	0			REV__ENST00000381168.7_1_11:2187868-2190906:-|nuORF	REV__ENST00000381168.7_1_11:2187868-2190906:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.3056945800781	2	484.293425	966.572297	-0.92032	-0.0004457	-1.4087	-0.00068221	-2.329	-0.0011279	484.29268456213816	30.505	0.24755	30.579	30.502	30.75	0.074314					7	5	2	0	0	0	0.03519	1	1904	1904		11.511	5.1984	1	41498	+		40012	31509	27551	27604	45413	45413					0.08767404494130915
LGGPFTLK	8	Unmodified	_LGGPFTLK_					0	0	0			REV__nc|ENSG00000171503|Q16134-3|ETFDH	REV__nc|ENSG00000171503|Q16134-3|ETFDH	MSMS	OPSCC_39_ClassI_Rep-3	3	416.75042724609375	2	416.749996	831.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.022	1	61.094	60.594	61.594	0.071125								0	0	0	0.26985	1	6964	6964		124.59	3.9733	1		+		40013	26576	27552	27605	45414	45414					0.06295605219725076
LGGPLLLRP	9	Unmodified	_LGGPLLLRP_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.30535888671875	2	468.30547	934.596387	-0.75523	-0.00035368	-0.01508	-7.062E-06	-0.77031	-0.00036074	468.3054831230446	61.988	0.80659	61.988	61.529	62.335	0					76	23	5	0	0	0	0.33184	1	7178	7178		71.378	2.8932	1	45601000	+		40014	31601	27553	27606	45415	45415					0.12647244927791235
LGGPLLLRP	9	Unmodified	_LGGPLLLRP_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.3054504394531	2	468.30547	934.596387	-0.27594	-0.00012923	-0.68264	-0.00031968	-0.95859	-0.00044891	468.3051649520783	62.223	1.9745	61.996	61.495	63.469	-0.22663					102	54	5	0	0	0	0.33184	2	7181	7181;7216		71.378	13.567	1	45322000	+		40015	31601	27553	27606	45416;45417	45416					0.12647244927791235
LGGPLLLRP	9	Unmodified	_LGGPLLLRP_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.3055114746094	2	468.30547	934.596387	-0.14446	-6.7653E-05	-0.86869	-0.00040681	-1.0132	-0.00047447	468.3050202581613	61.906	1.6994	61.968	61.542	63.242	0.062767					95	44	5	0	0	0	0.33184	1	7100	7100		71.378	2.8932	1	43419000	+		40016	31601	27553	27606	45418	45418					0.12647244927791235
LGGPLLLRP	9	Unmodified	_LGGPLLLRP_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	468.30547	934.596387	-0.75523	-0.00035368	-0.01508	-7.062E-06	-0.77031	-0.00036074	468.3054831230446	61.988	0.80659	61.988	61.529	62.335	0	0.0037926	0.00045137	NaN	71.378	76	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45601000	+		40017	31601	27553	27606							0.12647244927791235
LGGQRPATTM	10	Unmodified	_LGGQRPATTM_					0	0	0			REV__ENSG00000177875|ENST00000316554|CCDC184	REV__ENSG00000177875|ENST00000316554|CCDC184	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.27001953125	2	516.268758	1030.52296	-0.44993	-0.00023229	3.1627	0.0016328	2.7127	0.0014005	516.2706563454648	51.258	1.4526	51.109	50.256	51.709	-0.14916					92	41	4	0	0	0	0.67706	1	5396	5396		68.787	8.4929	1	7150600	+		40018	27148	27554	27607	45419	45419					0.008923284229922501
LGGQRPATTM	10	Unmodified	_LGGQRPATTM_					0	0	0			REV__ENSG00000177875|ENST00000316554|CCDC184	REV__ENSG00000177875|ENST00000316554|CCDC184	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2703857421875	2	516.268758	1030.52296	-1.236	-0.00063809	3.0705	0.0015852	1.8345	0.0009471	516.2696016634007	50.955	1.5503	51.042	50.06	51.61	0.087006					106	44	5	0	0	0	0.67706	1	5302	5302		68.787	5.8084	1	7243800	+		40019	27148	27554	27607	45420	45420					0.008923284229922501
LGGQTLKLT	9	Unmodified	_LGGQTLKLT_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000497693.1_1_9:37430482-37431094:+|nuORF;nc|ENSG00000137106|Q9UBQ7-2|GRHPR	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.7840270996094	2	465.784567	929.554582	0.61153	0.00028484	-0.67604	-0.00031489	-0.064518	-3.0052E-05	465.78414050794953	46.449	0.66948	46.501	46.203	46.873	0.051395					55	18	4	0	0	0	0.19099	1	4548	4548		90.37	10.657	1	2956100			40020	13216	27555	27608	45421	45421					0.08698644448600135
LGGRHHNL	8	Unmodified	_LGGRHHNL_					0	0	0			REV__ENSG00000142700|ENST00000404795|DMRTA2	REV__ENSG00000142700|ENST00000404795|DMRTA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.25341796875	2	452.249018	902.483482	-0.59921	-0.00027099	-1.7202	-0.00077797	-2.3194	-0.001049	452.2482304614676	28.53	1.2956	28.53	28.074	29.37	0					50	31	3	0	0	0	0.027866	1	1611	1611		14.664	0	1	962450	+		40021	24179	27556	27609	45422	45422					0.028339892544522627
LGGRRLKSP	9	Unmodified	_LGGRRLKSP_					0	0	0		ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2873229980469	2	492.309075	982.603597	0.31248	0.00015384	2.1712	0.0010689	2.4837	0.0012228	492.3098991104191	68.053	0.65025	68.053	67.719	68.369	0					40	16	4	0	0	0	0.02435	1	8114	8114		26.693	0	1	476470			40022	3165	27557	27610	45423	45423					0.11159977528211584
LGGSKLFHV	9	Unmodified	_LGGSKLFHV_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27886962890625	2	479.279452	956.544351	-0.050895	-2.4393E-05	-3.2747	-0.0015695	-3.3256	-0.0015939	479.2776228774827	96.341	2.321	96.184	95.4	97.721	-0.15646					118	52	5	0	0	0	0.72875	1	11944	11944		44.117	3.3386	1	1642300	+		40023	22118	27558	27611	45424	45424					0.0643408151404401
LGGSQMETL	9	Unmodified	_LGGSQMETL_					0	0	0			REV__ENST00000474330.1_1_7:105518710-105520137:+|nuORF	REV__ENST00000474330.1_1_7:105518710-105520137:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30535888671875	2	468.228768	934.442982	-0.22987	-0.00010763	0.24496	0.0001147	0.015092	7.0667E-06	468.22872838842414	53.113	0.36552	53.113	52.901	53.267	0					14	9	2	0	0	0	0.024405	1	5739	5739		20.947	4.4738	1	141830	+		40024	33271	27559	27612	45425	45425					-0.02686157970822478
LGGTGKPVR	9	Unmodified	_LGGTGKPVR_					0	0	0		chr11:1761468-1769527|123|21.28|0.0|21.02|-|0|TE_info:LTR8,LTR8_dup2173,ERV1,LTR,donor,+,1769527,1769632|CTSD,None|2	chr11:1761468-1769527|123|21.28|0.0|21.02|-|0|TE_info:LTR8,LTR8_dup2173,ERV1,LTR,donor,+,1769527,1769632|CTSD,None|2	chr11:1761468-1769527|123|21.28|0.0|21.02|-|0|TE_info:LTR8,LTR8_dup2173,ERV1,LTR,donor,+,1769527,1769632|CTSD,None|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.7700500488281	2	442.769252	883.52395	-0.83048	-0.00036771	1.0001	0.00044282	0.16964	7.511E-05	442.76958539219265	20.347	1.3151	20.347	19.782	21.097	0					56	26	3	0	0	0	0.62163	1	517	517		51.335	1.8939	1	1044900			40025	307	27560	27613	45426	45426					0.07752910854219408
LGGTRLSL	8	Unmodified	_LGGTRLSL_					0	0	0		ENSG00000142765|ENST00000616558|SYTL1;nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENST00000475199.1_1_1:27679714-27680340:+|nuORF	ENSG00000142765|ENST00000616558|SYTL1	ENSG00000142765|ENST00000616558|SYTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	408.7508544921875	2	408.750527	815.486502	-0.95102	-0.00038873	0.82346	0.00033659	-0.12756	-5.2141E-05	408.7507245532579	37.919	0.72134	37.701	37.463	38.184	-0.21849					46	20	3	0	0	0	0.42327	1	3067	3067		94.006	0	1	1974700			40026	5588	27561	27614	45427	45427					0.07137819588615457
LGGVLDNAH	9	Unmodified	_LGGVLDNAH_					0	0	0			REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF	REV__ENST00000485596.5_1_15:85634092-85681131:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2350158691406	2	448.235242	894.45593	-0.83988	-0.00037646	0.63236	0.00028344	-0.20752	-9.3018E-05	448.2354692965165	37.721	1.3113	37.721	37.486	38.797	0					74	36	5	0	0	0	0.13494	1	3108	3108		102.77	1.1726	1	9123000	+		40027	20499	27562	27615	45428	45428					0.004480412035604786
LGGVNAVGHS	10	Unmodified	_LGGVNAVGHS_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7582092285156	2	455.740691	909.466829	-0.020259	-9.2329E-06	0.39264	0.00017894	0.37238	0.00016971	455.74042465887163	46.708	0.55643	46.76	46.579	47.136	0.051399					14	14	2	0	0	0	0.03519	1	4632	4632		99.375	0	1	84818			40028	7608	27563	27616	45429	45429					0.008474435778566658
LGGWIFSNPDG	11	Unmodified	_LGGWIFSNPDG_					0	0	0		ENSG00000143178|ENST00000367821|TBX19	ENSG00000143178|ENST00000367821|TBX19	ENSG00000143178|ENST00000367821|TBX19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.2689819335938	2	581.780013	1161.54547	-0.42632	-0.00024802	0.24625	0.00014326	-0.18007	-0.00010476	581.7798368580915	63.109	1.0438	62.85	62.631	63.675	-0.25824					52	26	3	0	0	0	0.024752	1	7216	7216		25.574	0	1	767120			40029	5617	27564	27617	45430	45430					-0.028837489077204737
LGGWLVDRA	9	Unmodified	_LGGWLVDRA_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7846374511719	2	493.774534	985.534515	0.30568	0.00015094	-0.14635	-7.2262E-05	0.15934	7.8676E-05	493.77429148773234	56.509	0.84714	56.293	55.958	56.805	-0.21607					46	21	3	0	0	0	0.024325	1	6179	6179		24.203	0	1	1630900			40030	5055	27565	27618	45431	45431					0.04116893508660269
LGGWWRVEA	9	Unmodified	_LGGWWRVEA_					0	0	0		ENST00000356208.9_1_20:55984016-55984184:+|nuORF	ENST00000356208.9_1_20:55984016-55984184:+|nuORF	ENST00000356208.9_1_20:55984016-55984184:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2905883789062	2	537.279983	1072.54541	-0.73302	-0.00039383	-2.5283	-0.0013584	-3.2613	-0.0017522	537.2778483061252	82.372	0.34153	82.372	82.237	82.579	0					18	7	4	0	0	0	0.024487	1	10278	10278		31.955	0	1	83948			40031	12663	27566	27619	45432	45432					0.012042958829397321
LGGYKFAR	8	Unmodified	_LGGYKFAR_					0	0	0			REV__ENST00000535410.1_1_12:123012010-123012199:+|nuORF	REV__ENST00000535410.1_1_12:123012010-123012199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2876892089844	2	456.25852	910.502486	-1.0637	-0.00048533	-2.2818	-0.0010411	-3.3455	-0.0015264	456.2567370285412	29.126	0.30204	28.881	28.709	29.011	-0.24524					9	6	2	0	0	0	0.027866	1	1760	1760		21.702	1.2205	1	41227	+		40032	34670	27567	27620	45433	45433					0.04365525825517125
LGHGLRLI	8	Unmodified	_LGHGLRLI_					0	0	0		nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1;nc|ENSG00000229769|A0A0K0K1G8|TRBV10-2	nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	nc|ENSG00000211717|A0A0K0K1A3|TRBV10-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.7528076171875	2	439.782162	877.549771	-0.39327	-0.00017295	0.66965	0.0002945	0.27638	0.00012155	439.78223229270657	23.487	0.40676	23.307	23.112	23.519	-0.17989					23	9	3	0	0	0	0.027866	1	919	919		20.482	0	1	174240			40033	18694	27568	27621	45434	45434					0.1060980509652154
LGHPFLVLSLV	11	Unmodified	_LGHPFLVLSLV_					0	0	0		ENST00000468564.6_1_22:44582182-44582449:+|nuORF	ENST00000468564.6_1_22:44582182-44582449:+|nuORF	ENST00000468564.6_1_22:44582182-44582449:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	598.3158569335938	2	597.865892	1193.71723	0.37112	0.00022188	-0.47948	-0.00028666	-0.10836	-6.4785E-05	597.8656024523741	67.772	0.33772	67.517	67.323	67.661	-0.25516					11	7	2	0	0	0	0.024738	1	7782	7782		34.173	0.25091	1	65524			40034	14875	27569	27622	45435	45435					0.12812027850600316
LGHPFLVLSLV	11	Unmodified	_LGHPFLVLSLV_					0	0	0		ENST00000468564.6_1_22:44582182-44582449:+|nuORF	ENST00000468564.6_1_22:44582182-44582449:+|nuORF	ENST00000468564.6_1_22:44582182-44582449:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	597.865892	1193.71723	-0.41976	-0.00025096	-0.13621	-8.1434E-05	-0.55597	-0.00033239	597.8661291861999	67.695	0.21561	67.457	67.334	67.549	-0.23814	-0.030127	0.00030481	NaN	34.173	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60046			40035	14875	27569	27622							0.12812027850600316
LGHRLQLT	8	Unmodified	_LGHRLQLT_					0	0	0		nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.29541015625	2	469.282526	936.550499	0.19349	9.0801E-05	-3.7507	-0.0017601	-3.5572	-0.0016693	469.2812471854396	64.263	0.90668	64	63.36	64.267	-0.2626					40	24	3	0	0	0	0.027866	1	7421	7421		37.159	6.6555	1	293220			40036	1053	27570	27623	45436	45436					0.07968599745561278
LGHVMELPV	9	Unmodified	_LGHVMELPV_					0	0	0			REV__ENST00000450775.2_1_16:725790-727700:+|nuORF	REV__ENST00000450775.2_1_16:725790-727700:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7745361328125	2	497.773145	993.531738	0.31474	0.00015667	2.6697	0.0013289	2.9844	0.0014856	497.77466424727845	100.84	1.0196	100.84	100.53	101.55	0					54	23	3	0	0	0	0.44472	1	12906	12906		62.978	5.1671	1	849760	+		40037	21375	27571	27624	45437	45437					0.03471302059494974
LGIAILGDP	9	Unmodified	_LGIAILGDP_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.8025207519531	2	434.760561	867.506569	-0.14757	-6.4159E-05	0.64397	0.00027997	0.4964	0.00021581	434.7606639550894	66.476	0.66277	66.227	65.741	66.404	-0.24839					35	16	3	0	0	0	0.023954	1	7563	7563		62.978	8.2138	1	413460			40038	6396	27572	27625	45438	45438					0.06751570528570028
LGIFGLGDL	9	Unmodified	_LGIFGLGDL_					0	0	0		sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.2490234375	2	452.760561	903.506569	-0.073187	-3.3136E-05	-3.3314	-0.0015083	-3.4046	-0.0015415	452.7591180585398	102.81	0.63968	102.81	102.57	103.21	0					38	15	4	0	0	0	0.024	1	13150	13150		45.952	0	1	910420			40039	37921	27573	27626	45439	45439					0.0509557052856735
LGIGAAMKGGY	11	Oxidation (M)	_LGIGAAM(Oxidation (M))KGGY_		LGIGAAM(1)KGGY		LGIGAAM(79)KGGY	0	0	1			REV__ENSG00000121064|ENST00000262288|SCPEP1	REV__ENSG00000121064|ENST00000262288|SCPEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2717895507812	2	527.273509	1052.53247	0.63967	0.00033728	-0.82222	-0.00043354	-0.18255	-9.6253E-05	527.2712476933875	82.241	1.4543	82.131	81.441	82.895	-0.11006					56	34	3	0	0	0	0.45219	1	10221	10221		79.451	24.675	1	6518300	+		40040	22577	27574	27627	45440	45440		668			0.008300967085688171
LGIGICFI	8	Unmodified	_LGIGICFI_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	417.92120361328125	2	418.24095	834.467346	-0.028713	-1.2009E-05	4.4218	0.0018494	4.3931	0.0018374	418.2426448757525	45.884	0.44369	45.932	45.721	46.164	0.048279					21	12	2	0	0	0	0.027866	1	4412	4412		43.626	19.122	1	251130			40041	3805	27575	27628	45441	45441					0.043491469733453414
LGIGSVLPL	9	Unmodified	_LGIGSVLPL_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.77947998046875	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	0.4855	1	2800	2800		60.294	0	1	8541000			40042	6944	27576	27629	45442	45442					0.10388447425293634
LGIGSVLPL	9	Unmodified	_LGIGSVLPL_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7798767089844	2	434.778754	867.542954	1.4087	0.00061247	1.711	0.00074391	3.1197	0.0013564	434.779355277664	36.149	1.9951	35.951	35.288	37.284	-0.19829					165	52	6	0	0	0	0.78069	1	2781	2781		40.573	0	1	8518400			40043	6944	27576	27629	45443	45443					0.10388447425293634
LGILALIDEG	10	Unmodified	_LGILALIDEG_					0	0	0		ENST00000502833.5_1_4:106344467-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-6|PPA2;ENST00000506815.5_3_4:106326917-106395140:-|nuORF;ENST00000509426.5_1_4:106320018-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-3|PPA2;ENSG00000138777|ENST00000341695|PPA2;nc|ENSG00000138777|Q9H2U2-2|PPA2	ENST00000502833.5_1_4:106344467-106395207:-|nuORF	ENST00000502833.5_1_4:106344467-106395207:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7678527832031	2	507.297507	1012.58046	-1.0725	-0.00054406	-0.33282	-0.00016884	-1.4053	-0.0007129	507.2967466706741	60.855	0.5123	60.679	60.443	60.955	-0.1761					33	12	4	0	0	0	0.03519	1	6823	6823		17.365	0	1	349060			40044	15676	27577	27630	45444	45444					0.0746749390025343
LGILDVMQI	9	Unmodified	_LGILDVMQI_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2916564941406	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.72875	1	10261	10261		44.117	2.6902	1	10571000			40045	3189	27578	27631	45445	45445					0.06244455373735036
LGILLLLPV	9	Unmodified	_LGILLLLPV_					0	0	0			REV__ENSG00000158477|ENST00000289429|CD1A	REV__ENSG00000158477|ENST00000289429|CD1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7923889160156	2	475.836071	949.65759	0.31212	0.00014852	0.98915	0.00047067	1.3013	0.00061919	475.83666468804574	50.174	0.12576	50.174	50.084	50.21	0					6	3	2	0	0	0	0.024541	1	5227	5227		14.664	0	1	46748	+		40046	25199	27579	27632	45446	45446					0.18074756907242318
LGINASFF	8	Unmodified	_LGINASFF_					0	0	0		ENSG00000156466|ENST00000287020|GDF6;GDF6|p.E109K|1|0.3|ENSG00000156466|chr8:96160368-96160368|C/T|missense_variant	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.78021240234375	2	434.731803	867.449054	-0.97816	-0.00042524	0.12448	5.4115E-05	-0.85368	-0.00037112	434.7321506591512	36.02	0.20327	35.978	35.864	36.067	-0.042454					7	5	2	0	0	0	0.027866	1	2787	2787		47.916	0	1	41112			40047	6530	27580	27633	45447	45447					0.010027283229987916
LGIPRTSFT	9	Unmodified	_LGIPRTSFT_					0	0	0			REV__ENST00000548753.1_1_12:54734376-54737035:+|nuORF	REV__ENST00000548753.1_1_12:54734376-54737035:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.2835693359375	2	496.282192	990.549831	-0.19641	-9.7474E-05	3.3749	0.0016749	3.1785	0.0015774	496.28354613903764	20.322	0.92207	20.155	19.62	20.542	-0.16774					42	18	4	0	0	0	0.80658	1	538	538		38.806	9.6566	1	370340	+		40048	34883	27581	27634	45448	45448					0.054177603058633395
LGISIFTT	8	Unmodified	_LGISIFTT_					0	0	0		ENST00000555056.1_1_14:94770757-94780257:-|nuORF	ENST00000555056.1_1_14:94770757-94780257:-|nuORF	ENST00000555056.1_1_14:94770757-94780257:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2462158203125	2	426.247286	850.48002	0.80944	0.00034502	-3.6413	-0.0015521	-2.8319	-0.0012071	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	1.0574	2	10581	10581;10607		26.796	0	1	12732000			40049	16671	27582	27635	45449;45450	45449					0.04879881637236849
LGISMAKVL	9	Unmodified	_LGISMAKVL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;EIF2B5|p.E657K|1|0.16|ENSG00000145191|chr3:184144198-184144198|G/A|missense_variant;ENST00000492226.1_1_3:183861886-183862561:+|nuORF;ENST00000465218.2_1_3:183861194-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.2840881347656	2	466.285889	930.557224	0.072218	3.3674E-05	-3.5596	-0.0016598	-3.4874	-0.0016261	466.2841167361943	102.25	0.64996	102.26	101.98	102.63	0.0073471					32	14	3	0	0	0	0.25032	1	13066	13066		82.305	0	1	422510			40050	5794	27583	27636	45451	45451					0.08916776581918384
LGISMAKVL	9	Unmodified	_LGISMAKVL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;EIF2B5|p.E657K|1|0.16|ENSG00000145191|chr3:184144198-184144198|G/A|missense_variant;ENST00000492226.1_1_3:183861886-183862561:+|nuORF;ENST00000465218.2_1_3:183861194-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	466.285889	930.557224	-0.46139	-0.00021514	-2.9755	-0.0013874	-3.4369	-0.0016026	466.2843406329675	102.26	0.65611	102.26	102.04	102.69	0	0.053413	0.00065912	NaN	82.305	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314130			40051	5794	27583	27636							0.08916776581918384
LGISMAKVL	9	Unmodified	_LGISMAKVL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;EIF2B5|p.E657K|1|0.16|ENSG00000145191|chr3:184144198-184144198|G/A|missense_variant;ENST00000492226.1_1_3:183861886-183862561:+|nuORF;ENST00000465218.2_1_3:183861194-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.285889	930.557224	0.21402	9.9795E-05	-3.659	-0.0017061	-3.445	-0.0016064	466.284133307729	102.09	0.27849	101.97	101.83	102.1	-0.12666	-0.23693	2.1706E-05	NaN	82.305	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37801			40052	5794	27583	27636							0.08916776581918384
LGIWGVLGGGV	11	Unmodified	_LGIWGVLGGGV_					0	0	0		ENST00000486227.5_1_X:48672769-48673201:+|nuORF	ENST00000486227.5_1_X:48672769-48673201:+|nuORF	ENST00000486227.5_1_X:48672769-48673201:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.2984619140625	2	514.300384	1026.58622	-0.24511	-0.00012606	-4.1484	-0.0021335	-4.3935	-0.0022596	514.2980950801538	95.286	1.1712	95.149	94.723	95.894	-0.13689					65	26	4	0	0	0	0.98311	1	11775	11775		40.573	4.9543	1	1439900			40053	15341	27584	27637	45452	45452					0.073986372025729
LGIYDDSGGY	10	Unmodified	_LGIYDDSGGY_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.27734375	2	530.235104	1058.45566	-0.60804	-0.0003224	0.78422	0.00041582	0.17618	9.3416E-05	530.2354077331997	57.845	0.46848	57.668	57.358	57.826	-0.17776					24	11	3	0	0	0	0.03519	1	6352	6352		60.972	0	1	1801600	+		40054	25739	27585	27638	45453	45453					-0.07123423306939003
LGIYDDSGGY	10	Unmodified	_LGIYDDSGGY_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2778930664062	2	530.235104	1058.45566	-0.31231	-0.0001656	0.49237	0.00026107	0.18006	9.5472E-05	530.235248590333	57.942	0.42401	57.708	57.463	57.887	-0.23363					21	10	3	0	0	0	0.03519	1	6334	6334		71.296	21.271	1	1551600	+		40055	25739	27585	27638	45454	45454					-0.07123423306939003
LGKAIRGKIA	10	Unmodified	_LGKAIRGKIA_					0	0	0		ENST00000527257.1_1_11:124971961-124972228:-|nuORF	ENST00000527257.1_1_11:124971961-124972228:-|nuORF	ENST00000527257.1_1_11:124971961-124972228:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.842529296875	2	513.842751	1025.67095	-0.32746	-0.00016827	-0.88149	-0.00045295	-1.209	-0.00062121	513.8423320452422	23.48	1.1029	23.3	23.021	24.124	-0.17989					75	25	5	0	0	0	1.0142	1	947	947		44.117	3.5442	1	7452200			40056	16146	27586	27639	45455	45455					0.15914007739161207
LGKAKHVT	8	Unmodified	_LGKAKHVT_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.2660217285156	2	427.266345	852.518136	0.057993	2.4779E-05	0.32013	0.00013678	0.37812	0.00016156	427.2663046027323	43.394	0.84662	43.281	42.962	43.809	-0.11253					56	22	3	0	0	0	0.97924	1	3986	3986		40.573	8.6178	1	3014500	+		40057	23453	27587	27640	45456	45456					0.08597812342566158
LGKKRIPL	8	Unmodified	_LGKKRIPL_					0	0	0			REV__ENST00000467053.5_1_13:111837518-111837560:+|nuORF	REV__ENST00000467053.5_1_13:111837518-111837560:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	462.821287	923.628021	-0.44882	-0.00020772	-1.4004	-0.00064814	-1.8492	-0.00085586	462.8209736128651	23.339	0.2388	23.278	23.069	23.308	-0.06086					11	5	3	0	0	0	0.027866	1	878	878		40.573	10.069	1	126250	+		40058	33059	27588	27641	45457	45457					0.16315237681760664
LGKLHRAAS	9	Unmodified	_LGKLHRAAS_					0	0	0		nc|ENSG00000261239|Q6NSI1|ANKRD26P1	nc|ENSG00000261239|Q6NSI1|ANKRD26P1	nc|ENSG00000261239|Q6NSI1|ANKRD26P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2608947753906	2	476.787976	951.561398	-0.4587	-0.0002187	-1.8144	-0.00086511	-2.2731	-0.0010838	476.7873029469343	28.226	0.39932	27.981	27.842	28.241	-0.24524					10	9	2	0	0	0	0.024506	1	1666	1666		30.504	23.31	1	447420			40059	18783	27589	27642	45458	45458					0.08368002119846096
LGKLHRAAS	9	Unmodified	_LGKLHRAAS_					0	0	0		nc|ENSG00000261239|Q6NSI1|ANKRD26P1	nc|ENSG00000261239|Q6NSI1|ANKRD26P1	nc|ENSG00000261239|Q6NSI1|ANKRD26P1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.787976	951.561398	0.093921	4.4781E-05	0.12557	5.9872E-05	0.2195	0.00010465	476.78789251949433	28.092	0.562	28.092	27.844	28.406	0	0.055622	0.00023961	NaN	23.042	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139400			40060	18783	27589	27642							0.08368002119846096
LGKLVLLL	8	Unmodified	_LGKLVLLL_					0	0	0		ENST00000396271.7_1_10:27529291-27529648:-|nuORF	ENST00000396271.7_1_10:27529291-27529648:-|nuORF	ENST00000396271.7_1_10:27529291-27529648:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7718505859375	2	434.815139	867.615725	-0.7533	-0.00032755	2.6037	0.0011321	1.8504	0.00080456	434.8153670584789	25.328	0.15163	25.294	25.161	25.313	-0.034395					5	3	2	0	0	0	0.027866	1	1171	1171		14.664	5.1935	1	53571			40061	13548	27590	27643	45459	45459					0.1766220121870674
LGKLVNILL	9	Unmodified	_LGKLVNILL_					0	0	0		TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.8240051269531	2	491.836603	981.658653	0.086553	4.257E-05	3.9057	0.001921	3.9923	0.0019636	491.8386270777799	70.046	0.25087	69.795	69.691	69.942	-0.25063					9	5	2	0	0	0	0.022756	1	8157	8157		79.451	5.4763	1	82148			40062	38081	27591	27644	45460	45460					0.1670897127612534
LGKRQSLT	8	Unmodified	_LGKRQSLT_					0	0	0			REV__ENSG00000100234|ENST00000266085|TIMP3	REV__ENSG00000100234|ENST00000266085|TIMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.7743225097656	2	451.774534	901.534515	0.072932	3.2949E-05	-0.091045	-4.1132E-05	-0.018113	-8.1828E-06	451.7744200966355	21.49	0.633	21.299	20.931	21.564	-0.19072					38	12	5	0	0	0	0.88442	1	659	659		52.299	0	1	637930	+		40063	21071	27592	27645	45461	45461					0.07980893508647569
LGKTTGKK	8	Unmodified	_LGKTTGKK_					0	0	0		ENSG00000114857|ENST00000232978|NKTR;NKTR-RNF41|1|fusion;ENST00000487466.5_1_3:42642209-42661208:+|nuORF	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.75	2	416.766178	831.517802	-0.16815	-7.0081E-05	-1.9104	-0.00079619	-2.0786	-0.00086627	416.76568711984385	60.957	0.25522	61.028	60.947	61.203	0.071125					8	6	2	0	0	0	0.027866	1	6954	6954		50.025	25.822	1	45279			40064	3389	27593	27646	45462	45462					0.09530392622707495
LGKVHLAM	8	Unmodified	_LGKVHLAM_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7594299316406	2	434.757298	867.500044	0.30541	0.00013278	4.2307	0.0018393	4.5361	0.0019721	434.7590631513954	86.846	1.5284	86.801	86.076	87.604	-0.045105					104	35	5	0	0	0	1.0572	1	10909	10909		28.254	1.4582	1	5549200			40065	2493	27594	27647	45463	45463					0.0609935409619311
LGKVHLAM	8	Unmodified	_LGKVHLAM_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7594909667969	2	434.757298	867.500044	0.4777	0.00020768	4.1594	0.0018083	4.6371	0.002016	434.75903003403516	86.907	1.794	86.77	86.268	88.062	-0.13734					101	42	4	0	0	0	1.0133	2	10588	10527;10588		35.201	5.3592	1	4266100			40066	2493	27594	27647	45464;45465	45465					0.0609935409619311
LGKVKGRIN	9	Unmodified	_LGKVKGRIN_					0	0	0			REV__ENSG00000118900|ENST00000262376|UBN1	REV__ENSG00000118900|ENST00000262376|UBN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2593688964844	2	492.819276	983.623999	-0.38099	-0.00018776	-0.53926	-0.00026576	-0.92025	-0.00045352	492.81879225767835	37.428	0.42875	37.365	37.127	37.556	-0.063385					18	11	3	0	0	0	0.023817	1	2997	2997		71.296	7.9894	1	139680	+		40067	22429	27595	27648	45466	45466					0.1315314818804154
LGKVTCSCLI	10	Unmodified	_LGKVTCSCLI_					0	0	0		ENST00000372715.6_1_9:131396210-131396525:-|nuORF	ENST00000372715.6_1_9:131396210-131396525:-|nuORF	ENST00000372715.6_1_9:131396210-131396525:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.780029296875	2	518.780113	1035.54567	-0.18929	-9.8199E-05	-0.23163	-0.00012017	-0.42092	-0.00021837	518.7798810537632	51.525	1.0182	51.525	51.067	52.085	0					79	28	4	0	0	0	0.64538	1	5469	5469		71.877	0.58177	1	8563100			40068	13049	27596	27649	45467	45467					0.029322114962951673
LGLALVHSL	9	Unmodified	_LGLALVHSL_					0	0	0			REV__nc|ENSG00000104765|O60238-2|BNIP3L	REV__nc|ENSG00000104765|O60238-2|BNIP3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.759033203125	2	461.789653	921.564752	-0.089707	-4.1426E-05	-2.0994	-0.00096949	-2.1891	-0.0010109	461.7874373819649	30.6	0.4144	30.674	30.42	30.834	0.074314					13	9	2	0	0	0	0.024535	1	1936	1936		25.45	0	1	99729	+		40069	21461	27597	27650	45468	45468					0.10083252173853907
LGLARSGLP	9	Unmodified	_LGLARSGLP_					0	0	0			REV__ENST00000487700.1_1_1:46714192-46733228:+|nuORF	REV__ENST00000487700.1_1_1:46714192-46733228:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2427673339844	2	442.271627	882.528701	-1.0938	-0.00048375	1.4868	0.00065755	0.39296	0.0001738	442.27195471235456	38.201	0.24703	38.201	38.037	38.284	0					13	7	3	0	0	0	0.02435	1	3171	3171		42.396	20.436	1	246520	+		40070	20763	27598	27651	45469	45469					0.08273794997001005
LGLARSGLP	9	Unmodified	_LGLARSGLP_					0	0	0			REV__ENST00000487700.1_1_1:46714192-46733228:+|nuORF	REV__ENST00000487700.1_1_1:46714192-46733228:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.271627	882.528701	-0.81974	-0.00036255	3.9246	0.0017357	3.1048	0.0013732	442.27255023529574	38.467	0.41292	38.246	38.085	38.498	-0.22148	-0.030837	0.0016063	NaN	40.778	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68427	+		40071	20763	27598	27651							0.08273794997001005
LGLCITPHVT	10	Unmodified	_LGLCITPHVT_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.2899169921875	2	527.291702	1052.56885	0.042688	2.2509E-05	-1.325	-0.00069869	-1.2824	-0.00067618	527.2907758574759	103.95	1.253	103.83	103.52	104.77	-0.12561					50	32	3	0	0	0	0.71272	1	12934	12934		66.429	10.925	1	435140	+		40072	20536	27599	27652	45470	45470					0.044669736052583175
LGLCNLQTT	9	Carbamidomethyl (C)	_LGLC(Carbamidomethyl (C))NLQTT_	LGLC(1)NLQTT		LGLC(88)NLQTT		0	1	0		CCDC142|p.T430N|1|0.27|ENSG00000135637|chr2:74481056-74481056|G/T|missense_variant	CCDC142|p.T430N|1|0.27|ENSG00000135637|chr2:74481056-74481056|G/T|missense_variant	CCDC142|p.T430N|1|0.27|ENSG00000135637|chr2:74481056-74481056|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.84466552734375	2	510.263142	1018.51173	-0.41623	-0.00021239	-2.5337	-0.0012928	-2.9499	-0.0015052	510.26164170319305	76.115	1.1129	75.842	75.306	76.419	-0.27266					82	27	4	0	0	0	0.022083	1	8995	8995		87.754	13.499	1	2591400			40073	224	27600	27653	45471	45471	3				0.0032150632886214225
LGLCSVKI	8	Unmodified	_LGLCSVKI_					0	0	0			REV__ENSG00000240771|ENST00000286494|ARHGEF25	REV__ENSG00000240771|ENST00000286494|ARHGEF25	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.75006103515625	2	416.751682	831.48881	-0.23174	-9.6579E-05	-2.2946	-0.00095628	-2.5263	-0.0010529	416.7505724255866	61.312	0.89671	61.106	60.695	61.592	-0.20599					41	21	3	0	0	0	0.27193	1	6859	6859		123.99	12.34	1	1131400	+		40074	28963	27601	27654	45472	45472					0.06632532002072367
LGLDLKRS	8	Unmodified	_LGLDLKRS_					0	0	0		ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2493896484375	2	451.276909	900.539266	0.28087	0.00012675	-1.1629	-0.00052477	-0.882	-0.00039802	451.2757464560607	37.113	0.3077	36.904	36.806	37.114	-0.2092					10	7	2	0	0	0	0.027866	1	2959	2959		68.485	0	1	38250			40075	4013	27602	27655	45473	45473					0.08501777651417797
LGLDPKLL	8	Unmodified	_LGLDPKLL_					0	0	0		ENST00000428288.2_1_7:27565835-27702463:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7796325683594	2	434.778754	867.542954	-0.73732	-0.00032057	3.4626	0.0015055	2.7253	0.0011849	434.7801177790497	44.225	2.0022	43.98	42.832	44.835	-0.2444					165	53	4	0	0	0	0.88442	1	4062	4062		52.299	2.2746	1	3379000			40076	2754	27603	27656	45474	45474					0.10388447425293634
LGLEHFQAP	9	Unmodified	_LGLEHFQAP_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.2655944824219	2	506.266542	1010.51853	0.083137	4.2089E-05	-0.7436	-0.00037646	-0.66046	-0.00033437	506.26606071647666	62.645	1.1212	62.708	62.442	63.564	0.062767					54	28	2	0	0	0	0.78069	1	7213	7213		40.573	0	1	4129200			40077	1232	27604	27657	45475	45475					0.01369187271757255
LGLELNQT	8	Unmodified	_LGLELNQT_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.2689208984375	2	444.245275	886.475997	-0.25519	-0.00011337	0.80884	0.00035932	0.55365	0.00024596	444.245508526473	28.097	0.78527	28.178	27.871	28.657	0.080811					33	18	2	0	0	0	0.027866	1	1610	1610		30.504	1.3541	1	524540	+		40078	36756	27605	27658	45476	45476					0.028217921435384596
LGLEQNLT	8	Unmodified	_LGLEQNLT_					0	0	0		ENST00000570292.1_1_16:15134044-15134209:-|nuORF	ENST00000570292.1_1_16:15134044-15134209:-|nuORF	ENST00000570292.1_1_16:15134044-15134209:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2685241699219	2	444.245275	886.475997	-1.5152	-0.0006731	2.3777	0.0010563	0.86251	0.00038317	444.24613947032856	28.874	0.51828	28.628	28.363	28.881	-0.24524					20	11	2	0	0	0	0.027866	1	1715	1715		37.159	0	1	187500			40079	17027	27606	27659	45477	45477					0.028217921435157223
LGLFAQLLG	9	Unmodified	_LGLFAQLLG_					0	0	0		ENST00000395184.5_1_4:86396313-86396598:+|nuORF	ENST00000395184.5_1_4:86396313-86396598:+|nuORF	ENST00000395184.5_1_4:86396313-86396598:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.2835998535156	2	466.284203	930.553853	0.95712	0.00044629	-0.78234	-0.00036479	0.17478	8.1496E-05	466.2837428172178	102.34	0.61717	102.33	102.02	102.63	-0.0054398					32	13	3	0	0	0	0.4855	1	13034	13034		60.294	12.378	1	298960			40080	13506	27607	27660	45478	45478					0.08579849799571093
LGLFAVLLSC	10	Unmodified	_LGLFAVLLSC_					0	0	0		ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2987060546875	2	518.298996	1034.58344	-0.78256	-0.0004056	-2.7136	-0.0014065	-3.4962	-0.0018121	518.2976765003833	102.67	3.4549	102.67	101.08	104.53	0					224	81	6	0	0	0	0.52589	6	13189	13165;13189;13201;13215;13228;13273		85.359	14.543	1	63214000			40081	9322	27608	27661	45479;45480;45481;45482;45483;45484	45480					0.06753045753407605
LGLFAVLLSC	10	Unmodified	_LGLFAVLLSC_					0	0	0		ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2978515625	2	518.298996	1034.58344	-0.17627	-9.1363E-05	-3.4613	-0.001794	-3.6376	-0.0018853	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.44576	6	13167	13084;13143;13155;13167;13205;13217		94.006	24.494	1	66134000			40082	9322	27608	27661	45485;45486;45487;45488;45489;45490	45488					0.06753045753407605
LGLFAVLLSC	10	Unmodified	_LGLFAVLLSC_					0	0	0		ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2974853515625	2	518.298996	1034.58344	-0.1979	-0.00010257	-3.3248	-0.0017232	-3.5227	-0.0018258	518.2973986074476	102.7	2.9604	102.7	101.67	104.63	-0.0046082					228	70	5	0	0	0	0.60134	4	13072	13048;13072;13121;13133		76.847	5.495	1	70878000			40083	9322	27608	27661	45491;45492;45493;45494	45492					0.06753045753407605
LGLFAVLLSC	10	Unmodified	_LGLFAVLLSC_					0	0	0		ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.2971801757812	2	518.298996	1034.58344	0.17839	9.2457E-05	-3.7681	-0.001953	-3.5898	-0.0018606	518.2969119261578	102.55	1.8614	102.42	101.5	103.36	-0.12931					94	44	4	0	0	0	0.28649	3	12741	12718;12729;12741		110.34	21.694	1	4318600			40084	9322	27608	27661	45495;45496;45497	45497					0.06753045753407605
LGLFAVLLSC	10	Unmodified	_LGLFAVLLSC_					0	0	0		ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.29736328125	2	518.298996	1034.58344	0.18652	9.6674E-05	-3.8533	-0.0019971	-3.6667	-0.0019005	518.2968764050886	102.52	1.719	102.39	101.41	103.13	-0.12666					79	41	4	0	0	0	0.62679	1	12755	12755		73.975	16.163	1	4753000			40085	9322	27608	27661	45498	45498					0.06753045753407605
LGLFAVLLSC	10	Unmodified	_LGLFAVLLSC_					0	0	0		ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.2971801757812	2	518.298996	1034.58344	0.33697	0.00017465	-3.9888	-0.0020674	-3.6518	-0.0018927	518.2968087323576	102.58	1.456	102.41	101.78	103.24	-0.17178					76	35	4	0	0	0	0.62679	1	12742	12742		73.975	8.5094	1	4621500			40086	9322	27608	27661	45499	45499					0.06753045753407605
LGLFKKKGSA	10	Unmodified	_LGLFKKKGSA_					0	0	0		nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-4|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	nc|ENSG00000162522|Q9P206|NHSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2943725585938	2	524.829309	1047.64407	-0.67214	-0.00035276	-3.4706	-0.0018215	-4.1428	-0.0021743	524.8273383528887	101.11	0.4222	101.11	100.82	101.24	0					12	9	2	0	0	0	0.03519	1	12922	12922		20.947	0	1	34115			40087	18434	27609	27662	45500	45500					0.12214899128002799
LGLGGCNEPIH	11	Unmodified	_LGLGGCNEPIH_					0	0	0			REV__nc|ENSG00000117054|P11310-2|ACADM	REV__nc|ENSG00000117054|P11310-2|ACADM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.2721557617188	2	555.274041	1108.53353	0.1343	7.4571E-05	-3.624	-0.0020123	-3.4897	-0.0019377	555.2718673168333	95.704	1.4427	95.708	95.347	96.79	0.0033798					77	33	4	0	0	0	0.72712	1	12177	12177		62.107	1.1355	1	4785900	+		40088	36595	27610	27663	45501	45501					-0.016396889225688938
LGLGGPWQSP	10	Unmodified	_LGLGGPWQSP_					0	0	0		ENSG00000128185|ENST00000248879|DGCR6L	ENSG00000128185|ENST00000248879|DGCR6L	ENSG00000128185|ENST00000248879|DGCR6L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.2660217285156	2	506.266542	1010.51853	0.083137	4.2089E-05	-0.7436	-0.00037646	-0.66046	-0.00033437	506.26606071647666	62.645	1.1212	62.708	62.442	63.564	0.062767					54	28	2	0	0	0	1.0541	1	7237	7237		38.806	0	1	4129200			40089	4277	27611	27664	45502	45502					0.01369187271757255
LGLGLNAKLA	10	Unmodified	_LGLGLNAKLA_					0	0	0			REV__ENST00000524668.5_2_12:55375593-55375671:-|nuORF	REV__ENST00000524668.5_2_12:55375593-55375671:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.745849609375	2	485.30821	968.601866	-0.084621	-4.1067E-05	0.23757	0.0001153	0.15295	7.4229E-05	485.30814361561426	61.817	0.67725	61.604	61.375	62.052	-0.21375					20	16	2	0	0	0	0.03519	1	6991	6991		42.396	20.436	1	105740	+		40090	34390	27612	27665	45503	45503					0.11630923719610564
LGLGWARI	8	Unmodified	_LGLGWARI_					0	0	0		ENST00000369842.8_1_X:153608704-153609501:+|nuORF	ENST00000369842.8_1_X:153608704-153609501:+|nuORF	ENST00000369842.8_1_X:153608704-153609501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.26678466796875	2	443.268887	884.523222	-0.35774	-0.00015857	-4.2575	-0.0018872	-4.6153	-0.0020458	443.26692516798755	29.65	1.3659	29.653	29.166	30.532	0.0031376					89	33	4	0	0	0	1.0472	1	1831	1831		29.842	1.5873	1	3245000			40091	12941	27613	27666	45504	45504					0.07634116205190367
LGLHPRAV	8	Unmodified	_LGLHPRAV_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.2508544921875	2	431.766512	861.518471	0.60922	0.00026304	-0.46977	-0.00020283	0.13945	6.0209E-05	431.76606415728963	42.878	0.3969	42.904	42.68	43.077	0.026016					13	10	2	0	0	0	0.027866	1	3935	3935		28.254	0	1	93756			40092	641	27614	27667	45505	45505					0.08217232062418134
LGLKENIGL	9	Unmodified	_LGLKENIGL_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7927551269531	2	478.792392	955.570232	0.43669	0.00020908	-0.63692	-0.00030495	-0.20023	-9.5867E-05	478.79185332165343	50.757	0.52334	50.757	50.544	51.067	0					43	14	4	0	0	0	0.72875	1	5342	5342		44.117	0	1	6748400	+		40093	21336	27615	27668	45506	45506					0.09066930965661868
LGLKKFPE	8	Unmodified	_LGLKKFPE_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.28363037109375	2	466.284203	930.553853	-0.46139	-0.00021514	0.63902	0.00029797	0.17764	8.2828E-05	466.2843406329675	102.26	0.65611	102.26	102.04	102.69	0					34	14	3	0	0	0	0.68535	1	13108	13108		68.485	2.6815	1	314130	+		40094	23266	27616	27669	45507	45507					0.08579849799571093
LGLKPLEV	8	Unmodified	_LGLKPLEV_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.778754	867.542954	-0.95099	-0.00041347	3.6893	0.001604	2.7383	0.0011905	434.78020673494336	38.061	0.70214	38.088	37.595	38.298	0.027275					63	19	4	0	0	0	0.99042	1	3109	3109		38.806	0	1	4193100			40095	8561	27617	27670	45508	45508					0.10388447425293634
LGLKSAQSL	9	Unmodified	_LGLKSAQSL_					0	0	0			REV__ENSG00000112218|ENST00000229955|GPR63	REV__ENSG00000112218|ENST00000229955|GPR63	MSMS	OPSCC_39_ClassI_Rep-3	3	458.77655029296875	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.575	1	46.626	46.126	47.126	0.051395								0	0	0	0.28089	1	4556	4556		69.628	2.134	1		+		40096	21979	27618	27671	45509	45509					0.07778357931567825
LGLKSVPAL	9	Unmodified	_LGLKSVPAL_					0	0	0		ENST00000391973.6_1_2:242292298-242292463:+|nuORF	ENST00000391973.6_1_2:242292298-242292463:+|nuORF	ENST00000391973.6_1_2:242292298-242292463:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.27392578125	2	449.292028	896.569503	-0.3493	-0.00015694	0.46294	0.00020799	0.11364	5.1056E-05	449.29211042150587	57.267	1.0888	57.1	56.597	57.686	-0.1672					65	28	3	0	0	0	0.023181	1	6176	6176		82.305	0	1	1336300			40097	13400	27619	27672	45510	45510					0.11708136316622131
LGLLAWPL	8	Unmodified	_LGLLAWPL_					0	0	0		ENST00000176763.9_1_5:171470934-171471408:-|nuORF	ENST00000176763.9_1_5:171470934-171471408:-|nuORF	ENST00000176763.9_1_5:171470934-171471408:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7879333496094	2	441.776014	881.537475	0.27036	0.00011944	2.8538	0.0012607	3.1241	0.0013802	441.7769835574666	40.912	0.18087	40.912	40.835	41.016	0					5	4	2	0	0	0	0.027866	1	3650	3650		5.0869	0	1	107780			40098	11119	27620	27673	45511	45511					0.09196768633466945
LGLLFLRSI	9	Unmodified	_LGLLFLRSI_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|368|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|368|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|368|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3140869140625	2	516.334227	1030.6539	-0.24123	-0.00012456	-2.6984	-0.0013933	-2.9396	-0.0015178	516.3328609842254	98.039	0.2932	98.039	97.94	98.233	0					12	6	3	0	0	0	0.024381	1	12542	12542		15.642	0.77694	1	90784			40099	17883	27621	27674	45512	45512					0.1398008713335912
LGLLGTLVAM	10	Unmodified	_LGLLGTLVAM_					0	0	0		ENSG00000165376|ENST00000336803|CLDN2	ENSG00000165376|ENST00000336803|CLDN2	ENSG00000165376|ENST00000336803|CLDN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3010559082031	2	494.298996	986.583439	0.003029	1.4972E-06	3.2604	0.0016116	3.2634	0.0016131	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	1.0541	1	12230	12230		38.806	2.4885	1	42897000			40100	7406	27622	27675	45513	45513					0.08961045753403596
LGLLGTLVAM	10	Unmodified	_LGLLGTLVAM_					0	0	0		ENSG00000165376|ENST00000336803|CLDN2	ENSG00000165376|ENST00000336803|CLDN2	ENSG00000165376|ENST00000336803|CLDN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.301025390625	2	494.298996	986.583439	0.83498	0.00041273	2.7667	0.0013676	3.6017	0.0017803	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	1.0541	1	11937	11937		38.806	0	1	37582000			40101	7406	27622	27675	45514	45514					0.08961045753403596
LGLLLEKP	8	Unmodified	_LGLLLEKP_					0	0	0			REV__ENSG00000174842|ENST00000370360|GLMN	REV__ENSG00000174842|ENST00000370360|GLMN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.787841796875	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	1.0133	1	3589	3589		35.201	0	1	35892000	+		40102	26899	27623	27676	45515	45515					0.11308733942325944
LGLLLHPFKDL	11	Unmodified	_LGLLLHPFKDL_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.5933837890625	3	422.592058	1264.75434	-0.0027145	-1.1471E-06	1.5578	0.00065831	1.5551	0.00065717	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	1.0429	1	5214	5214		27.047	0.98393	1	16177000			40103	3311	27624	27677	45516	45516					0.13255699396381715
LGLLLPQP	8	Unmodified	_LGLLLPQP_					0	0	0		ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7749938964844	2	425.773471	849.53239	-0.086541	-3.6847E-05	3.0095	0.0012814	2.923	0.0012445	425.7747981740325	42.002	1.1717	42.002	41.579	42.75	0					125	33	6	0	0	0	1.0574	1	3835	3835		21.702	0	1	65572000			40104	12303	27625	27678	45517	45517					0.10160464770854105
LGLLLPQP	8	Unmodified	_LGLLLPQP_					0	0	0		ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.7749938964844	2	425.773471	849.53239	-0.25623	-0.0001091	3.2704	0.0013925	3.0142	0.0012834	425.7748978545771	42.198	1.1395	42.066	41.641	42.78	-0.13219					115	32	6	0	0	0	1.0472	3	3859	3823;3859;3871		29.842	0	1	68817000			40105	12303	27625	27678	45518;45519;45520	45519					0.10160464770854105
LGLLLPQP	8	Unmodified	_LGLLLPQP_					0	0	0		ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.7748718261719	2	425.773471	849.53239	0.19274	8.2063E-05	2.6344	0.0011217	2.8272	0.0012037	425.7746312811681	42.075	1.1896	42.101	41.636	42.825	0.026012					124	33	6	0	0	0	1.0574	3	3758	3758;3766;3790		21.702	0	1	66524000			40106	12303	27625	27678	45521;45522;45523	45521					0.10160464770854105
LGLLLPQP	8	Unmodified	_LGLLLPQP_					0	0	0		ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.77447509765625	2	425.773471	849.53239	0.17338	7.3822E-05	2.9368	0.0012504	3.1102	0.0013242	425.77467244094674	42.032	1.0796	41.909	41.603	42.683	-0.12299					99	28	5	0	0	0	0.94001	2	3738	3738;3784		46.766	0	1	37307000			40107	12303	27625	27678	45524;45525	45524					0.10160464770854105
LGLLLPQP	8	Unmodified	_LGLLLPQP_					0	0	0		ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.775390625	2	425.773471	849.53239	0.11223	4.7786E-05	2.9026	0.0012358	3.0148	0.0012836	425.7746512667468	42.244	1.0604	42.013	41.688	42.749	-0.2303					107	28	5	0	0	0	1.0362	2	3789	3789;3801		31.579	1.4582	1	35838000			40108	12303	27625	27678	45526;45527	45526					0.10160464770854105
LGLLRAEP	8	Unmodified	_LGLLRAEP_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7799377441406	2	434.766178	867.517802	-0.47717	-0.00020746	-2.7084	-0.0011775	-3.1856	-0.001385	434.7649442803572	36.142	0.16933	35.937	35.852	36.021	-0.20518					6	4	2	0	0	0	0.027866	1	2813	2813		31.955	6.5047	1	37742	+		40109	27806	27626	27679	45528	45528					0.07874392622704818
LGLMYCIRSEP	11	Unmodified	_LGLMYCIRSEP_					0	0	0			REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2530822753906	3	427.882515	1280.62571	0.061449	2.6293E-05	-0.081404	-3.4831E-05	-0.019955	-8.5383E-06	427.8817863967084	23.586	0.30373	23.663	23.518	23.822	0.076241					9	6	2	0	0	0	0.024748	1	895	895		24.232	3.9168	1	13956	+		40110	28007	27627	27680	45529	45529					-0.003373469005282459
LGLPLVEV	8	Unmodified	_LGLPLVEV_					0	0	0			REV__ENSG00000136169|ENST00000611815|SETDB2	REV__ENSG00000136169|ENST00000611815|SETDB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.240234375	2	420.265479	838.516405	-0.041661	-1.7509E-05	2.4734	0.0010395	2.4317	0.001022	420.26708697477846	37.462	0.34982	37.252	36.923	37.273	-0.2092					12	8	2	0	0	0	0.027866	1	2955	2955		26.796	1.3459	1	65703	+		40111	23635	27628	27681	45530	45530					0.090687585339424
LGLPVLRA	8	Unmodified	_LGLPVLRA_					0	0	0		ENST00000418386.2_1_6:31540090-31540530:+|nuORF	ENST00000418386.2_1_6:31540090-31540530:+|nuORF	ENST00000418386.2_1_6:31540090-31540530:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.25115966796875	2	419.779088	837.543623	-0.66184	-0.00027783	2.4646	0.0010346	1.8028	0.00075678	419.7797236068702	26.179	0.17441	25.943	25.803	25.977	-0.23603					6	4	2	0	0	0	0.027866	1	1308	1308		14.664	0	1	46197			40112	13937	27629	27682	45531	45531					0.11835286864993577
LGLQHVSP	8	Unmodified	_LGLQHVSP_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2588195800781	2	425.742702	849.470852	-0.19424	-8.2697E-05	-0.19773	-8.4183E-05	-0.39197	-0.00016688	425.74248465130654	40.746	0.39297	40.746	40.623	41.016	0					17	10	2	0	0	0	0.027866	1	3635	3635		38.806	22.333	1	126310			40113	10939	27630	27683	45532	45532					0.04009533071575788
LGLQRVLLA	9	Unmodified	_LGLQRVLLA_					0	0	0		ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.82379150390625	2	491.824027	981.633501	-0.70878	-0.00034859	0.30612	0.00015056	-0.40266	-0.00019804	491.8241502379091	70.19	0.90935	69.922	69.327	70.237	-0.26724					59	21	5	0	0	0	0.17455	1	8144	8144		94.006	0	1	8489700			40114	14331	27631	27684	45533	45533					0.1419491647355926
LGLQRVLLA	9	Unmodified	_LGLQRVLLA_					0	0	0		ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.8235778808594	2	491.824027	981.633501	0.088461	4.3507E-05	-0.49122	-0.00024159	-0.40276	-0.00019809	491.8237772370958	70.049	0.73724	69.799	69.483	70.22	-0.25063					55	17	4	0	0	0	0.17455	2	8136	8136;8145		94.006	3.2298	1	9033600			40115	14331	27631	27684	45534;45535	45534					0.1419491647355926
LGLQRVLLA	9	Unmodified	_LGLQRVLLA_					0	0	0		ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	ENST00000439290.5_1_9:131833323-131833761:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.82379150390625	2	491.824027	981.633501	0.25956	0.00012766	-0.75691	-0.00037227	-0.49736	-0.00024461	491.82362427095893	70.007	0.73326	69.785	69.432	70.165	-0.22245					63	17	5	0	0	0	0.25032	1	8140	8140		82.305	0	1	9032000			40116	14331	27631	27684	45536	45536					0.1419491647355926
LGLRAEWG	8	Unmodified	_LGLRAEWG_					0	0	0			REV__ENST00000420783.7_1_3:49050474-49050594:+|nuORF	REV__ENST00000420783.7_1_3:49050474-49050594:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2493896484375	2	451.248152	900.481751	0.011224	5.0648E-06	3.6776	0.0016595	3.6889	0.0016646	451.24971751571303	37.221	1.2318	37.012	36.605	37.837	-0.2092					76	31	4	0	0	0	0.75307	1	2959	2959		62.978	5.1671	1	2904100	+		40117	32169	27632	27685	45537	45537					0.02752935445857929
LGLRLQLSL	9	Unmodified	_LGLRLQLSL_					0	0	0		ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000163283|ENST00000392027|ALPP;ENSG00000163286|ENST00000295453|ALPG;ENSG00000163295|ENST00000295463|ALPI	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000163286|ENST00000295453|ALPG;ENSG00000163295|ENST00000295463|ALPI	ENSG00000163286|ENST00000295453|ALPG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8283996582031	2	506.829309	1011.64407	-0.16584	-8.4051E-05	0.052439	2.6577E-05	-0.1134	-5.7473E-05	506.82918241668375	67.429	0.93767	67.429	67.126	68.064	0					49	23	4	0	0	0	0.39228	1	8066	8066		66.429	7.6473	1	2257700			40118	66;7056;7058	27633	27686	45538	45538					0.13870899128005476
LGLRPERALQL	11	Unmodified	_LGLRPERALQL_					0	0	0			REV__ENSG00000175213|ENST00000311764|ZNF408	REV__ENSG00000175213|ENST00000311764|ZNF408	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5926208496094	3	422.594461	1264.76155	-0.08907	-3.7641E-05	-4.0755	-0.0017223	-4.1646	-0.0017599	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0621	1	5241	5241		21.78	1.75	1	15587000	+		40119	26929	27634	27687	45539	45539					0.13976431996798055
LGLRRPSGG	9	Unmodified	_LGLRRPSGG_					0	0	0			REV__ENSG00000117013|ENST00000347132|KCNQ4	REV__ENSG00000117013|ENST00000347132|KCNQ4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7719421386719	2	456.772326	911.530098	0.66934	0.00030574	-0.96876	-0.0004425	-0.29943	-0.00013677	456.7717653095696	89.004	2.3631	89.004	87.651	90.015	0					120	56	4	0	0	0	0.83071	1	11213	11213		37.159	8.0096	1	3840100	+		40120	22319	27635	27688	45540	45540					0.07079429085763422
LGLRRPSGG	9	Unmodified	_LGLRRPSGG_					0	0	0			REV__ENSG00000117013|ENST00000347132|KCNQ4	REV__ENSG00000117013|ENST00000347132|KCNQ4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7715148925781	2	456.772326	911.530098	0.57232	0.00026142	-0.83883	-0.00038315	-0.26651	-0.00012173	456.77180226295417	89.123	1.793	89.139	88.45	90.243	0.015907					92	42	4	0	0	0	0.83071	1	11150	11150		37.159	8.0096	1	3375300	+		40121	22319	27635	27688	45541	45541					0.07079429085763422
LGLSAKTCNN	10	Unmodified	_LGLSAKTCNN_					0	0	0		nc|ENSG00000183484|Q9UNW8-3|GPR132;ENSG00000183484|ENST00000329797|GPR132	nc|ENSG00000183484|Q9UNW8-3|GPR132	nc|ENSG00000183484|Q9UNW8-3|GPR132	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7283020019531	2	510.760766	1019.50698	-0.24042	-0.0001228	-3.4487	-0.0017615	-3.6892	-0.0018843	510.758915219819	54.932	0.49319	54.932	54.623	55.116	0					19	13	2	0	0	0	0.03519	1	6038	6038		49.536	0.094497	1	304980			40122	9234	27636	27689	45542	45542					-0.001993778138853486
LGLSAKTCNN	10	Unmodified	_LGLSAKTCNN_					0	0	0		nc|ENSG00000183484|Q9UNW8-3|GPR132;ENSG00000183484|ENST00000329797|GPR132	nc|ENSG00000183484|Q9UNW8-3|GPR132	nc|ENSG00000183484|Q9UNW8-3|GPR132	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7279968261719	2	510.760766	1019.50698	-0.20219	-0.00010327	-3.4735	-0.0017741	-3.6756	-0.0018774	510.75874658115737	54.66	0.39064	54.758	54.558	54.949	0.098015					20	10	3	0	0	0	0.03519	1	5938	5938		93.143	24.356	1	236830			40123	9234	27636	27689	45543	45543					-0.001993778138853486
LGLSIGVPI	9	Unmodified	_LGLSIGVPI_					0	0	0			REV__nc|ENSG00000127054|Q5TA45-5|INTS11	REV__nc|ENSG00000127054|Q5TA45-5|INTS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7799072265625	2	434.778754	867.542954	-0.80807	-0.00035133	4.0744	0.0017715	3.2664	0.0014202	434.7803826773186	38.404	0.63618	38.224	37.939	38.576	-0.17929					62	17	4	0	0	0	0.96855	1	3204	3204		26.796	0	1	3943600	+		40124	36642	27637	27690	45544	45544					0.10388447425293634
LGLSIGVPI	9	Unmodified	_LGLSIGVPI_					0	0	0			REV__nc|ENSG00000127054|Q5TA45-5|INTS11	REV__nc|ENSG00000127054|Q5TA45-5|INTS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.77996826171875	2	434.778754	867.542954	-0.63914	-0.00027789	3.8333	0.0016666	3.1942	0.0013888	434.7802686350116	38.389	0.72919	38.168	37.959	38.688	-0.22149					66	19	4	0	0	0	0.97516	1	3201	3201		25.45	1.2474	1	4491300	+		40125	36642	27637	27690	45545	45545					0.10388447425293634
LGLSLLPRA	9	Unmodified	_LGLSLLPRA_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.29010009765625	2	470.302927	938.591301	-0.37432	-0.00017605	-0.87979	-0.00041377	-1.2541	-0.00058981	470.3023745695312	27.981	0.19047	27.981	27.884	28.074	0					6	4	2	0	0	0	0.024457	1	1585	1585		37.159	8.0096	1	31617	+		40126	23506	27638	27691	45546	45546					0.11954941065175717
LGLTCLLWL	9	Unmodified	_LGLTCLLWL_					0	0	0			REV__ENSG00000166145|ENST00000562057|SPINT1	REV__ENSG00000166145|ENST00000562057|SPINT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2997436523438	2	516.301539	1030.58852	-0.28456	-0.00014692	-3.1121	-0.0016068	-3.3966	-0.0017537	516.2999584865539	104.14	1.4157	104.14	103.74	105.15	0					115	39	4	0	0	0	0.24299	3	13352	13352;13364;13375		83.287	10.667	1	7636000	+		40127	25977	27639	27692	45547;45548;45549	45547					0.07445349616023123
LGLTCLLWL	9	Unmodified	_LGLTCLLWL_					0	0	0			REV__ENSG00000166145|ENST00000562057|SPINT1	REV__ENSG00000166145|ENST00000562057|SPINT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2996215820312	2	516.301539	1030.58852	-0.36416	-0.00018802	-3.2445	-0.0016751	-3.6086	-0.0018631	516.2999017348479	104.18	1.4423	104.18	103.81	105.25	-0.0032196					106	40	3	0	0	0	0.24299	1	13307	13307		83.287	3.348	1	7489400	+		40128	25977	27639	27692	45550	45550					0.07445349616023123
LGLTCLLWL	9	Unmodified	_LGLTCLLWL_					0	0	0			REV__ENSG00000166145|ENST00000562057|SPINT1	REV__ENSG00000166145|ENST00000562057|SPINT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.299560546875	2	516.301539	1030.58852	0.40809	0.0002107	-3.885	-0.0020058	-3.4769	-0.0017951	516.2995417642799	104.08	1.4875	103.91	103.6	105.08	-0.16791					109	45	4	0	0	0	0.18276	1	12937	12937		92.191	12.251	1	7588000	+		40129	25977	27639	27692	45551	45551					0.07445349616023123
LGLTIQKRIHT	11	Unmodified	_LGLTIQKRIHT_					0	0	0		nc|ENSG00000168122|Q9NSJ1|ZNF355P	nc|ENSG00000168122|Q9NSJ1|ZNF355P	nc|ENSG00000168122|Q9NSJ1|ZNF355P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2646484375	3	427.266345	1278.7772	-0.45996	-0.00019653	-4.0555	-0.0017328	-4.5154	-0.0019293	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0739	1	5917	5917		18.531	0	1	57851000			40130	18488	27640	27693	45552	45552					0.14896718513841734
LGLTIQKRIHT	11	Unmodified	_LGLTIQKRIHT_					0	0	0		nc|ENSG00000168122|Q9NSJ1|ZNF355P	nc|ENSG00000168122|Q9NSJ1|ZNF355P	nc|ENSG00000168122|Q9NSJ1|ZNF355P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.26458740234375	3	427.266345	1278.7772	-0.58513	-0.00025001	-3.9587	-0.0016914	-4.5439	-0.0019414	427.2647783278071	53.901	2.7621	53.765	53.393	56.155	-0.13616					276	78	6	0	0	0	1.0592	3	5698	5664;5698;5723		22.562	1.5294	1	50487000			40131	18488	27640	27693	45553;45554;45555	45554					0.14896718513841734
LGLTLAAPL	9	Unmodified	_LGLTLAAPL_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7795104980469	2	434.778754	867.542954	0.45067	0.00019594	2.8989	0.0012604	3.3496	0.0014563	434.7798992749092	40.428	1.9181	40.428	39.696	41.615	0					185	53	4	0	0	0	0.90698	1	3479	3479		31.955	2.1133	1	6987300			40132	13220	27641	27694	45556	45556					0.10388447425270897
LGLTLAAPL	9	Unmodified	_LGLTLAAPL_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7802429199219	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	0.75282	2	3609	3485;3609		42.474	1.9018	1	6285600			40133	13220	27641	27694	45557;45558	45558					0.10388447425270897
LGLTLAAPL	9	Unmodified	_LGLTLAAPL_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7803649902344	2	434.778754	867.542954	-0.095049	-4.1325E-05	3.2879	0.0014295	3.1928	0.0013882	434.78010469367223	36.167	2.0758	36.205	35.569	37.645	0.038044					161	55	3	0	0	0	0.52323	2	2765	2742;2765		57.811	9.4519	1	9580100			40134	13220	27641	27694	45559;45560	45560					0.10388447425270897
LGLTLAAPL	9	Unmodified	_LGLTLAAPL_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7799072265625	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	0.67308	1	2789	2789		47.916	7.343	1	8541000			40135	13220	27641	27694	45561	45561					0.10388447425270897
LGLTLQSH	8	Unmodified	_LGLTLQSH_					0	0	0		ZNF347|p.S187T|1|0.09|ENSG00000197937|chr19:53142268-53142268|C/G|missense_variant	ZNF347|p.S187T|1|0.09|ENSG00000197937|chr19:53142268-53142268|C/G|missense_variant	ZNF347|p.S187T|1|0.09|ENSG00000197937|chr19:53142268-53142268|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7799377441406	2	434.747985	867.481417	-0.2605	-0.00011325	0.74482	0.00032381	0.48432	0.00021056	434.7482861938659	36.378	0.52322	36.173	35.919	36.443	-0.20518					26	13	4	0	0	0	0.027866	1	2813	2813		35.201	0	1	167110			40136	38186	27642	27695	45562	45562					0.04237515726003949
LGLVIPKE	8	Unmodified	_LGLVIPKE_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ENST00000521909.1_1_8:62430043-62438626:-|nuORF	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7799072265625	2	434.778754	867.542954	-0.095049	-4.1325E-05	3.2879	0.0014295	3.1928	0.0013882	434.78010469367223	36.167	2.0758	36.205	35.569	37.645	0.038044					161	55	3	0	0	0	1.0133	1	2813	2813		35.201	0	1	9580100			40137	10127	27643	27696	45563	45563					0.10388447425293634
LGLVIPKE	8	Unmodified	_LGLVIPKE_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ENST00000521909.1_1_8:62430043-62438626:-|nuORF	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7801208496094	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	1.0239	1	3490	3490		33.516	0	1	6443300			40138	10127	27643	27696	45564	45564					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.78009033203125	2	434.778754	867.542954	0.45067	0.00019594	2.8989	0.0012604	3.3496	0.0014563	434.7798992749092	40.428	1.9181	40.428	39.696	41.615	0					185	53	4	0	0	0	0.78069	1	3599	3599		40.573	3.5441	1	6987300			40139	6922	27644	27697	45565	45565					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.77984619140625	2	434.778754	867.542954	0.21274	9.2496E-05	3.02	0.001313	3.2327	0.0014055	434.7799429591237	46.948	1.1699	46.948	46.515	47.685	0					97	32	4	0	0	0	0.80658	2	4665	4665;4688		38.806	5.2906	1	3627000			40140	6922	27644	27697	45566;45567	45566					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7803039550781	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	0.78069	1	3598	3598		40.573	3.5441	1	6285600			40141	6922	27644	27697	45568	45568					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.780029296875	2	434.778754	867.542954	0.47497	0.00020651	2.855	0.0012413	3.33	0.0014478	434.7798589866304	47.13	1.0835	46.977	46.586	47.669	-0.15301					89	29	4	0	0	0	0.92825	1	4689	4689		30.504	0.6621	1	2312100			40142	6922	27644	27697	45569	45569					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7800598144531	2	434.778754	867.542954	-0.025772	-1.1205E-05	3.413	0.0014839	3.3872	0.0014727	434.78012510207304	40.646	1.8414	40.669	40.013	41.854	0.023006					178	51	4	0	0	0	0.78069	3	3589	3552;3589;3613		40.573	5.3719	1	8357300			40143	6922	27644	27697	45570;45571;45572	45571					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7796630859375	2	434.778754	867.542954	-0.29866	-0.00012985	4.3172	0.001877	4.0185	0.0017472	434.78008347013633	37.971	0.60732	37.791	37.363	37.971	-0.17929					44	16	4	0	0	0	0.88411	1	3094	3094		33.516	1.5607	1	3804100			40144	6922	27644	27697	45573	45573					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7801513671875	2	434.778754	867.542954	-0.77622	-0.00033748	4.009	0.001743	3.2328	0.0014056	434.780341833039	38.941	1.099	38.776	38.554	39.653	-0.16458					92	29	4	0	0	0	0.88411	1	3293	3293		33.516	0	1	3470400			40145	6922	27644	27697	45574	45574					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7798767089844	2	434.778754	867.542954	-0.43363	-0.00018853	3.7697	0.001639	3.3361	0.0014505	434.7802551861221	40.423	1.9513	40.273	39.513	41.464	-0.1497					168	51	4	0	0	0	0.64155	2	3466	3455;3466		50.025	9.4519	1	6063000			40146	6922	27644	27697	45575;45576	45576					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.77984619140625	2	434.778754	867.542954	-0.22339	-9.7125E-05	3.2901	0.0014305	3.0667	0.0013333	434.7800474486308	43.57	1.0371	43.458	42.735	43.772	-0.11253					97	27	4	0	0	0	0.78069	3	4034	4009;4034;4044		40.573	5.3719	1	2474000			40147	6922	27644	27697	45577;45578;45579	45578					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7796936035156	2	434.778754	867.542954	-0.56318	-0.00024486	3.454	0.0015017	2.8908	0.0012569	434.780071839875	48.246	2.2711	48.149	47.557	49.828	-0.097553					144	60	4	0	0	0	0.90698	1	4784	4784		31.955	5.1588	1	2675200			40148	6922	27644	27697	45580	45580					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.78021240234375	2	434.778754	867.542954	0.15534	6.7538E-05	3.0454	0.0013241	3.2007	0.0013916	434.77996518621967	36.241	1.8835	36.025	35.43	37.314	-0.21661					124	49	3	0	0	0	0.67308	1	2850	2850		47.916	1.9636	1	8069600			40149	6922	27644	27697	45581	45581					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.78045654296875	2	434.778754	867.542954	-0.096708	-4.2046E-05	3.3703	0.0014653	3.2736	0.0014233	434.78008853825247	40.597	2.0449	40.372	39.62	41.665	-0.225					180	53	4	0	0	0	0.78069	1	3501	3501		40.573	0	1	6024800			40150	6922	27644	27697	45582	45582					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	434.778754	867.542954	-0.30055	-0.00013067	3.4762	0.0015114	3.1757	0.0013807	434.7801213004645	42.409	1.3768	42.177	41.546	42.923	-0.23186					122	36	4	0	0	0	0.97516	1	3814	3814		25.45	0	1	3210900			40151	6922	27644	27697	45583	45583					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7799072265625	2	434.778754	867.542954	-0.73732	-0.00032057	3.4626	0.0015055	2.7253	0.0011849	434.7801177790497	44.225	2.0022	43.98	42.832	44.835	-0.2444					165	53	4	0	0	0	0.64155	3	4097	4097;4111;4122		50.025	5.4411	1	3379000			40152	6922	27644	27697	45584;45585;45586	45584					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7797546386719	2	434.778754	867.542954	0.14807	6.4377E-05	2.8093	0.0012214	2.9574	0.0012858	434.77981426491095	46.923	1.4792	46.654	46.379	47.858	-0.26939					156	40	5	0	0	0	0.92825	1	4578	4578		30.504	0	1	5703000			40153	6922	27644	27697	45587	45587					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7800598144531	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	0.75282	2	3503	3503;3575		42.474	7.2737	1	6443300			40154	6922	27644	27697	45588;45589	45588					0.10388447425293634
LGLVPSAVL	9	Unmodified	_LGLVPSAVL_					0	0	0		ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.780029296875	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	0.88411	1	4032	4032		33.516	3.674	1	4335900			40155	6922	27644	27697	45590	45590					0.10388447425293634
LGLWALWL	8	Unmodified	_LGLWALWL_					0	0	0			REV__ENST00000533646.1_1_11:64879487-64880551:+|nuORF;REV__ENST00000531029.5_1_11:64880120-64882285:+|nuORF	REV__ENST00000531029.5_1_11:64880120-64882285:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2633361816406	2	486.289288	970.564024	-1.3061	-0.00063513	4.0752	0.0019817	2.7692	0.0013466	486.29112805825713	30.512	0.78028	30.512	29.977	30.758	0					24	18	2	0	0	0	0.027866	1	1988	1988		43.626	0	1	85408	+		40156	34614;24703	27645	27698	45591	45591					0.07756457524806137
LGMKKFFTV	9	Oxidation (M)	_LGM(Oxidation (M))KKFFTV_		LGM(1)KKFFTV		LGM(69)KKFFTV	0	0	1		ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000158786|ENST00000375102|PLA2G2F	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8016967773438	2	543.804445	1085.59434	-0.98126	-0.00053361	-3.4981	-0.0019023	-4.4794	-0.0024359	543.80250044111	56.703	1.0714	56.801	56.397	57.468	0.097893					67	29	3	0	0	0	0.35646	1	6240	6240		68.787	6.6794	1	11152000			40157	6701	27646	27699	45592	45592		276			0.0549644812765564
LGMPTSQKSC	10	Unmodified	_LGMPTSQKSC_					0	0	0			REV__ENSG00000120129|ENST00000239223|DUSP1	REV__ENSG00000120129|ENST00000239223|DUSP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2884521484375	2	526.249177	1050.4838	0.45112	0.0002374	2.4347	0.0012813	2.8859	0.0015187	526.2503208473015	68.623	0.32313	68.392	68.116	68.439	-0.23047					12	7	2	0	0	0	0.03519	1	7895	7895		40.778	0	1	87732	+		40158	22513	27647	27700	45593	45593					-0.039421399228558585
LGMQVPTSL	9	Unmodified	_LGMQVPTSL_					0	0	0			REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.27166748046875	2	473.257328	944.500103	0.82814	0.00039192	1.6234	0.00076831	2.4516	0.0011602	473.2593830622105	41.17	0.10543	41.17	41.119	41.225	0					4	2	2	0	0	0	0.022756	1	3677	3677		68.787	0	1	46281	+		40159	32656	27648	27701	45594	45594					0.02563309305560324
LGMTPRMV	8	Unmodified	_LGMTPRMV_					0	0	0		ENST00000567385.5_1_16:48265837-48278487:-|nuORF	ENST00000567385.5_1_16:48265837-48278487:-|nuORF	ENST00000567385.5_1_16:48265837-48278487:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.75091552734375	2	452.740791	903.467029	0.36498	0.00016524	-0.58015	-0.00026266	-0.21517	-9.7418E-05	452.74043101118735	25.69	0.79499	25.771	25.254	26.049	0.08009					37	18	4	0	0	0	0.027866	1	1202	1202		31.955	18.996	1	274560			40160	16961	27649	27702	45595	45595					0.011434039818482233
LGMTPRMV	8	Unmodified	_LGMTPRMV_					0	0	0		ENST00000567385.5_1_16:48265837-48278487:-|nuORF	ENST00000567385.5_1_16:48265837-48278487:-|nuORF	ENST00000567385.5_1_16:48265837-48278487:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.740791	903.467029	-0.38334	-0.00017355	-0.15937	-7.2152E-05	-0.5427	-0.0002457	452.7407948689436	25.992	0.63754	25.969	25.526	26.164	-0.023088	0.063097	0.00016935	NaN	24.203	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184770			40161	16961	27649	27702							0.011434039818482233
LGNEVMSMVI	10	Unmodified	_LGNEVMSMVI_					0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.7761840820312	2	546.775028	1091.5355	-0.44264	-0.00024202	3.8551	0.0021079	3.4124	0.0018658	546.7776713516633	52.622	1.9552	52.475	52.132	54.088	-0.14723					88	52	3	0	0	0	0.31896	2	5606	5606;5617		107.01	27.295	1	4571500	+		40162	20691	27650	27703	45596;45597	45596					-0.0066039622895459615
LGNITVWPH	9	Unmodified	_LGNITVWPH_					0	0	0			REV__ENSG00000205810|ENST00000396439|KLRC3	REV__ENSG00000205810|ENST00000396439|KLRC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7796020507812	2	518.782359	1035.55016	-0.74321	-0.00038557	-3.9008	-0.0020236	-4.644	-0.0024092	518.780303054325	51.644	1.2453	51.497	51.12	52.366	-0.14735					78	34	4	0	0	0	0.36105	1	5481	5481		68.485	0.99103	1	9437400	+		40163	28691	27651	27704	45598	45598					0.03381180025712638
LGNKWGVTL	9	Unmodified	_LGNKWGVTL_					0	0	0			REV__ENST00000397940.5_3_8:21881645-21881798:+|nuORF	REV__ENST00000397940.5_3_8:21881645-21881798:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.28533935546875	2	494.284734	986.554916	-0.98477	-0.00048676	4.1961	0.0020741	3.2113	0.0015873	494.2866758435766	51.329	1.1575	51.416	51.077	52.235	0.087006					94	31	4	0	0	0	0.55828	1	5389	5389		55.504	0	1	4096900	+		40164	31791	27652	27705	45599	45599					0.06110064168478857
LGNLKKTL	8	Unmodified	_LGNLKKTL_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.7900085449219	2	443.789653	885.564752	-0.72877	-0.00032342	0.57434	0.00025488	-0.15443	-6.8534E-05	443.78976809230875	30.477	1.1528	30.299	29.953	31.106	-0.17818					63	27	4	0	0	0	0.28409	2	1944	1944;1954		118.74	0	1	3062600	+		40165	23814	27653	27706	45600;45601	45600					0.11739252173845216
LGNLKKTL	8	Unmodified	_LGNLKKTL_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.7898254394531	2	443.789653	885.564752	0.12527	5.5592E-05	-0.28534	-0.00012663	-0.16007	-7.1037E-05	443.78940560228614	30.517	1.1431	30.367	30.056	31.199	-0.14952					63	27	4	0	0	0	0.28409	2	1941	1930;1941		118.74	0	1	2978200	+		40166	23814	27653	27706	45602;45603	45603					0.11739252173845216
LGNLKKTL	8	Unmodified	_LGNLKKTL_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.789653	885.564752	-0.52365	-0.00023239	0.47736	0.00021185	-0.046292	-2.0544E-05	443.789739119384	30.547	1.0741	30.303	30.035	31.109	-0.24415	-0.019928	0.00025191	NaN	118.74	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3341800	+		40167	23814	27653	27706							0.11739252173845216
LGNLKKTL	8	Unmodified	_LGNLKKTL_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	443.789653	885.564752	-0.72877	-0.00032342	0.57434	0.00025488	-0.15443	-6.8534E-05	443.78976809230875	30.477	1.1528	30.299	29.953	31.106	-0.17818	-0.023935	0.00033798	NaN	118.74	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3062600	+		40168	23814	27653	27706							0.11739252173845216
LGNLKKTL	8	Unmodified	_LGNLKKTL_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	443.789653	885.564752	0.12527	5.5592E-05	-0.28534	-0.00012663	-0.16007	-7.1037E-05	443.78940560228614	30.517	1.1431	30.367	30.056	31.199	-0.14952	0.043864	-0.00042505	NaN	118.74	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2978200	+		40169	23814	27653	27706							0.11739252173845216
LGNQLPKIN	9	Unmodified	_LGNQLPKIN_					0	0	0		ENST00000478824.1_1_17:46783758-46784010:+|nuORF	ENST00000478824.1_1_17:46783758-46784010:+|nuORF	ENST00000478824.1_1_17:46783758-46784010:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.8077392578125	2	498.795466	995.57638	1.426	0.0007113	-1.2184	-0.00060771	0.20767	0.00010359	498.7947076454186	23.337	0.37214	23.146	22.988	23.36	-0.19117					16	8	3	0	0	0	0.024457	1	871	871		37.159	14.117	1	208350			40170	15156	27654	27707	45604	45604					0.07841449197178463
LGNSRGAVAV	10	Unmodified	_LGNSRGAVAV_					0	0	0			REV__ENST00000517543.1_1_8:4645759-4645930:+|nuORF	REV__ENST00000517543.1_1_8:4645759-4645930:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.27197265625	2	472.269616	942.524678	-0.13155	-6.2128E-05	4.3395	0.0020494	4.208	0.0019873	472.2715521784319	64.723	0.85641	64.769	64.372	65.229	0.045418					54	22	4	0	0	0	0.50517	1	7566	7566		87.696	18.91	1	4739600	+		40171	22965	27655	27708	45605	45605					0.051117055032818826
LGNSRGAVAV	10	Unmodified	_LGNSRGAVAV_					0	0	0			REV__ENST00000517543.1_1_8:4645759-4645930:+|nuORF	REV__ENST00000517543.1_1_8:4645759-4645930:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	472.269616	942.524678	-0.26524	-0.00012526	4.4782	0.0021149	4.2129	0.0019896	472.2716241578891	64.776	0.80852	64.776	64.384	65.192	0	0.00019699	-0.00013412	NaN	87.696	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3944100	+		40172	22965	27655	27708							0.051117055032818826
LGNVAIVSP	9	Unmodified	_LGNVAIVSP_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7798767089844	2	435.258185	868.501818	0.32343	0.00014077	0.74147	0.00032273	1.0649	0.00046351	435.2583034088915	40.364	0.47438	40.252	39.978	40.452	-0.11222					27	12	3	0	0	0	0.024	1	3495	3495		45.952	7.1458	1	173090	+		40173	28201	27656	27709	45606	45606					0.06230686385811168
LGPAAVLLAV	10	Unmodified	_LGPAAVLLAV_					0	0	0			REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.30023193359375	2	462.299853	922.585153	0.52002	0.0002404	-0.24172	-0.00011175	0.2783	0.00012866	462.2996372212712	86.481	0.51893	86.481	86.214	86.733	0					28	11	3	0	0	0	0.88914	1	10872	10872		54.765	2.4655	1	371900	+		40174	32191	27657	27710	45607	45607					0.12076422833661127
LGPAAVLLAV	10	Unmodified	_LGPAAVLLAV_					0	0	0			REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	462.299853	922.585153	0.52002	0.0002404	-0.24172	-0.00011175	0.2783	0.00012866	462.2996372212712	86.481	0.51893	86.481	86.214	86.733	0	0.042628	-0.0002552	NaN	54.765	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371900	+		40175	32191	27657	27710							0.12076422833661127
LGPAAVLLAV	10	Unmodified	_LGPAAVLLAV_					0	0	0			REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	462.299853	922.585153	0.09376	4.3345E-05	0.27384	0.00012659	0.3676	0.00016994	462.2998587291782	86.477	0.56182	86.432	86.163	86.725	-0.045097	-0.0065619	0.00022148	NaN	54.765	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366710	+		40176	32191	27657	27710							0.12076422833661127
LGPAAVLLAV	10	Unmodified	_LGPAAVLLAV_					0	0	0			REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	REV__ENST00000421834.6_3_6:56708204-56708255:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.299853	922.585153	0.14098	6.5173E-05	0.21521	9.949E-05	0.35618	0.00016466	462.2998768175239	86.378	0.64658	86.402	86.159	86.806	0.023666	-0.036066	0.00016727	NaN	54.765	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375650	+		40177	32191	27657	27710							0.12076422833661127
LGPCMLLALRG	11	Unmodified	_LGPCMLLALRG_					0	0	0		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENST00000565680.1_1_16:81725275-81734153:+|nuORF	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.3219604492188	2	572.322479	1142.63041	-0.42948	-0.0002458	-1.8366	-0.0010511	-2.2661	-0.0012969	572.319145605198	77.018	0.60886	76.851	76.483	77.092	-0.16675					53	14	5	0	0	0	0.782	1	9167	9167		58.782	4.0056	1	1022500			40178	6359	27658	27711	45608	45608					0.06479582032852704
LGPEGRSVA	9	Unmodified	_LGPEGRSVA_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2429504394531	2	443.243067	884.47158	-1.5616	-0.00069217	1.3354	0.00059192	-0.22616	-0.00010025	443.2436552231153	38.354	1.6453	38.381	37.884	39.529	0.027275					110	45	4	0	0	0	0.25032	1	3137	3137		82.305	2.3658	1	22628000			40179	18840	27659	27712	45609	45609					0.024723277206135208
LGPFHAKLE	9	Unmodified	_LGPFHAKLE_					0	0	0			REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2657165527344	2	506.284734	1010.55492	0.79906	0.00040455	-1.2451	-0.00063037	-0.44603	-0.00022582	506.7869354395632	62.944	0.58813	62.998	62.679	63.267	0.054104					29	14	3	0	0	0	0.023181	1	7225	7225		71.296	23.38	1	156990	+		40180	29203	27660	27713	45610	45610					0.05006064168469493
LGPFRVALS	9	Unmodified	_LGPFRVALS_					0	0	0			REV__ENST00000569389.5_1_16:74330522-74330627:-|nuORF	REV__ENST00000569389.5_1_16:74330522-74330627:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2887878417969	2	480.287277	958.560001	0.10248	4.922E-05	0.98198	0.00047163	1.0845	0.00052085	480.2880112423214	66.129	0.69138	65.856	65.568	66.26	-0.27282					54	17	4	0	0	0	0.4752	1	7837	7837		60.972	2.19	1	7446300	+		40181	35209	27661	27714	45611	45611					0.07906368031081001
LGPKGALRPQ	10	Unmodified	_LGPKGALRPQ_					0	0	0		nc|nan|Q96N68|C18orf15	nc|nan|Q96N68|C18orf15	nc|nan|Q96N68|C18orf15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.800537109375	2	518.816733	1035.61891	-0.60176	-0.00031221	4.4779	0.0023232	3.8761	0.002011	518.8186164074181	52.189	1.0455	52.281	51.93	52.976	0.091942					62	26	3	0	0	0	0.03519	1	5473	5473		34.173	1.3601	1	1417200			40182	18857	27662	27715	45612	45612					0.10252844325418664
LGPKRLVPS	9	Unmodified	_LGPKRLVPS_					0	0	0			REV__chr11:102945749-102947891|498|450.4|0.38|10.2|-|0|MMP13,MMP13|1	REV__chr11:102945749-102947891|498|450.4|0.38|10.2|-|0|MMP13,MMP13|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2380065917969	2	483.808377	965.6022	-1.0913	-0.00052796	-1.5335	-0.00074191	-2.6247	-0.0012699	483.8069304857872	40.593	0.4692	40.362	40.12	40.589	-0.23029					23	12	3	0	0	0	0.024517	1	3543	3543		19.36	7.1531	1	392510	+		40183	19347	27663	27716	45613	45613					0.11802343439455854
LGPKSLFW	8	Unmodified	_LGPKSLFW_					0	0	0		ENST00000378566.5_1_9:35106854-35108271:-|nuORF	ENST00000378566.5_1_9:35106854-35108271:-|nuORF	ENST00000378566.5_1_9:35106854-35108271:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7785339355469	2	474.271096	946.527639	-0.41365	-0.00019618	0.63985	0.00030346	0.2262	0.00010728	474.27156716822003	24.143	0.56744	24.096	23.741	24.308	-0.047148					28	12	3	0	0	0	0.027866	1	980	980		33.516	8.0654	1	2352100			40184	13241	27664	27717	45614	45614					0.05223580628091895
LGPLRPSGSS	10	Unmodified	_LGPLRPSGSS_					0	0	0			REV__ENST00000506301.1_1_15:42114172-42114999:+|nuORF	REV__ENST00000506301.1_1_15:42114172-42114999:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7715759277344	2	485.769448	969.524344	5.3637	0.0026055	-0.2455	-0.00011926	5.1182	0.0024863	485.7693710551651	17.157	0.18627	16.906	16.788	16.974	-0.25049					5	3	2	0	0	0	1.1096	1	126	126		15.642	1.8665	1	24111	+		40185	34023	27665	27718	45615	45615					0.03836285783427229
LGPLVAAPT	9	Unmodified	_LGPLVAAPT_					0	0	0			REV__ENSG00000165156|ENST00000395571|ZHX1	REV__ENSG00000165156|ENST00000395571|ZHX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5232849121094	2	419.755278	837.496004	0.2147	9.0122E-05	-3.2111	-0.0013479	-2.9964	-0.0012577	419.75382427081945	19.616	0.59096	19.455	19.183	19.774	-0.16079					19	11	2	0	0	0	0.024541	1	414	414		30.504	5.0535	1	152890	+		40186	25845	27666	27719	45616	45616					0.07075587874123812
LGPLVAAPT	9	Unmodified	_LGPLVAAPT_					0	0	0			REV__ENSG00000165156|ENST00000395571|ZHX1	REV__ENSG00000165156|ENST00000395571|ZHX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	419.755278	837.496004	0.97073	0.00040747	-4.0925	-0.0017178	-3.1218	-0.0013104	419.75344397999356	19.73	0.44535	19.53	19.355	19.801	-0.2001	0.048663	-9.8292E-05	NaN	30.504	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151450	+		40187	25845	27666	27719							0.07075587874123812
LGPLVAAPT	9	Unmodified	_LGPLVAAPT_					0	0	0			REV__ENSG00000165156|ENST00000395571|ZHX1	REV__ENSG00000165156|ENST00000395571|ZHX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	419.755278	837.496004	1.4159	0.00059433	-4.4977	-0.0018879	-3.0818	-0.0012936	419.75331588762697	19.692	0.59314	19.458	19.226	19.819	-0.23345	-0.022757	-0.00043846	NaN	30.504	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138780	+		40188	25845	27666	27719							0.07075587874123812
LGPNVTKITL	10	Unmodified	_LGPNVTKITL_					0	0	0		nc|ENSG00000065548|Q8WU90-2|ZC3H15;ENSG00000065548|ENST00000337859|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2730712890625	2	528.326599	1054.63865	0.38886	0.00020544	-0.38153	-0.00020157	0.0073257	3.8703E-06	528.32633168411	92.02	0.39074	92.029	91.875	92.265	0.0094147					16	9	3	0	0	0	0.03519	1	11609	11609		54.776	15.523	1	109800			40189	1309	27667	27720	45617	45617					0.11351175545519254
LGPPGQVGPLG	11	Unmodified	_LGPPGQVGPLG_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2803649902344	2	496.282192	990.549831	0.16528	8.2023E-05	-3.0782	-0.0015277	-2.9129	-0.0014456	496.2806173437213	18.512	0.4432	18.38	18.154	18.597	-0.13147					18	8	3	0	0	0	0.98218	1	292	292		40.778	1.5253	1	91201	+		40190	20733	27668	27721	45618	45618					0.05417760305851971
LGPPGQVGPLG	11	Unmodified	_LGPPGQVGPLG_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	496.282192	990.549831	0.16528	8.2023E-05	-3.0782	-0.0015277	-2.9129	-0.0014456	496.2806173437213	18.512	0.4432	18.38	18.154	18.597	-0.13147	0.035984	0.0010954	NaN	40.778	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91201	+		40191	20733	27668	27721							0.05417760305851971
LGPPTLTAL	9	Unmodified	_LGPPTLTAL_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.76837158203125	2	441.768386	881.522219	0.14561	6.4327E-05	-1.2505	-0.00055245	-1.1049	-0.00048812	441.76790990667746	102.78	1.6063	102.79	102.46	104.06	0.0054169					106	40	5	0	0	0	0.67308	2	13166	13119;13166		47.916	7.343	1	27080000			40192	5901	27669	27722	45619;45620	45620					0.07671857045602337
LGPPTLTAL	9	Unmodified	_LGPPTLTAL_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.76800537109375	2	441.768386	881.522219	-0.17194	-7.5957E-05	-0.7357	-0.00032501	-0.90764	-0.00040097	441.7681216130439	102.94	1.5731	102.81	102.45	104.03	-0.12783					93	37	5	0	0	0	0.88411	1	12827	12827		33.516	0	1	25733000			40193	5901	27669	27722	45621	45621					0.07671857045602337
LGPPTLTAL	9	Unmodified	_LGPPTLTAL_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7679138183594	2	441.768386	881.522219	0.61928	0.00027358	-1.6395	-0.00072428	-1.0202	-0.00045071	441.767731371388	103.03	1.3899	102.86	102.5	103.89	-0.17034					84	33	5	0	0	0	0.88411	1	12790	12790		33.516	8.0654	1	21018000			40194	5901	27669	27722	45622	45622					0.07671857045602337
LGPPWRSEALS	11	Unmodified	_LGPPWRSEALS_					0	0	0			REV__ENST00000495087.5_1_3:8990239-9005069:-|nuORF	REV__ENST00000495087.5_1_3:8990239-9005069:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	3	404.8839	1211.62987	-0.15778	-6.3885E-05	2.3535	0.00095288	2.1957	0.000889	404.8841513068217	45.803	0.54094	45.652	45.379	45.92	-0.15157					22	15	2	0	0	0	0.024772	1	4417	4417		14.694	0	1	96497	+		40195	20441	27670	27723	45623	45623					0.032522019090492904
LGPREAAP	8	Unmodified	_LGPREAAP_					0	0	0			REV__ENST00000541676.5_2_16:84213003-84213276:-|nuORF	REV__ENST00000541676.5_2_16:84213003-84213276:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	2	405.727052	809.439552	0.022079	8.958E-06	3.7971	0.0015406	3.8192	0.0015495	405.7270046081813	45.558	0.3998	45.407	45.178	45.578	-0.15157					20	11	3	0	0	0	0.027866	1	4417	4417		33.516	9.3128	1	212680	+		40196	34777	27671	27724	45624	45624					0.02720960037459008
LGPRPVVTP	9	Unmodified	_LGPRPVVTP_					0	0	0			REV__ENSG00000136158|ENST00000377104|SPRY2	REV__ENSG00000136158|ENST00000377104|SPRY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.2691345214844	2	468.287277	934.560001	-0.1472	-6.8931E-05	-1.1215	-0.00052518	-1.2687	-0.00059411	468.28506121594967	43.278	0.29301	43.139	42.991	43.284	-0.13929					10	7	2	0	0	0	0.024021	1	4023	4023		58.782	0	1	76856	+		40197	23632	27672	27725	45625	45625					0.09010368031078997
LGPSHKMA	8	Unmodified	_LGPSHKMA_					0	0	0			REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	REV__nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.750732421875	2	420.723455	839.432358	-0.077245	-3.2499E-05	1.3392	0.00056343	1.2619	0.00053093	420.7217972709447	41.627	0.63116	41.491	41.176	41.807	-0.13553					26	16	2	0	0	0	0.027866	1	3732	3732		25.45	2.4077	1	161850	+		40198	23134	27673	27726	45626	45626					0.0062190416539351645
LGPTLSET	8	Unmodified	_LGPTLSET_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.7422790527344	2	409.218726	816.422899	0.68835	0.00028168	-2.5913	-0.0010604	-1.9029	-0.00077872	409.2192079334765	54.878	0.24255	54.976	54.807	55.05	0.098015					11	6	3	0	0	0	0.027866	1	5942	5942		25.45	0	1	70243			40199	4100	27674	27727	45627	45627					0.007344143608520426
LGPTSRSFF	9	Unmodified	_LGPTSRSFF_					0	0	0			REV__ENST00000534806.1_1_19:15226885-15227589:-|nuORF	REV__ENST00000534806.1_1_19:15226885-15227589:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.2657165527344	2	506.266542	1010.51853	0.083137	4.2089E-05	-0.7436	-0.00037646	-0.66046	-0.00033437	506.26606071647666	62.645	1.1212	62.708	62.442	63.564	0.062767					54	28	2	0	0	0	0.22754	1	7225	7225		85.359	3.0545	1	4129200	+		40200	34594	27675	27728	45628	45628					0.01369187271757255
LGPVCKPL	8	Unmodified	_LGPVCKPL_					0	0	0			REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF	REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.86566162109375	2	413.746399	825.478245	1.5469	0.00064002	3.7696	0.0015597	5.3165	0.0021997	413.7476816471491	19.391	0.24316	19.391	19.268	19.511	0					6	4	2	0	0	0	0.027866	1	404	404		9.4706	0	1	17714	+		40201	33790	27676	27729	45629	45629					0.058525493476281554
LGPVLPASPP	10	Unmodified	_LGPVLPASPP_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7785339355469	2	474.28166	946.548768	-0.26769	-0.00012696	-2.9579	-0.0014029	-3.2256	-0.0015298	474.2801416857441	23.926	0.67909	23.879	23.321	24	-0.047148					24	15	2	0	0	0	0.03519	1	980	980		24.203	0	1	286860	+		40202	22175	27677	27730	45630	45630					0.07335545936950894
LGPVLVSY	8	Unmodified	_LGPVLVSY_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.25054931640625	2	424.249829	846.485105	0.59353	0.00025181	0.7089	0.00030075	1.3024	0.00055256	424.2501351892279	103.04	3.3951	102.87	100.71	104.11	-0.17034					139	82	3	0	0	0	1.0017	1	12791	12791		37.028	7.1869	1	9216600	+		40203	22693	27678	27731	45631	45631					0.05572185499852367
LGPVSRSH	8	Unmodified	_LGPVSRSH_					0	0	0		nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7751159667969	2	426.737951	851.46135	0.21746	9.2798E-05	3.2795	0.0013995	3.4969	0.0014923	426.7379359864244	42.2	0.7408	42.077	41.786	42.527	-0.12299					27	19	2	0	0	0	0.027866	1	3772	3772		33.516	9.3128	1	100900			40204	2697	27679	27732	45632	45632					0.029677647860467005
LGPVSRSH	8	Unmodified	_LGPVSRSH_					0	0	0		nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.77490234375	2	426.737951	851.46135	0.068504	2.9233E-05	-0.32843	-0.00014015	-0.25993	-0.00011092	426.7378992148791	42.36	0.50687	42.129	41.899	42.406	-0.2303					18	13	2	0	0	0	0.027866	1	3765	3765		38.806	16.846	1	197540			40205	2697	27679	27732	45633	45633					0.029677647860467005
LGQCKLANK	9	Unmodified	_LGQCKLANK_					0	0	0			REV__ENST00000439504.6_1_11:72535272-72535518:+|nuORF	REV__ENST00000439504.6_1_11:72535272-72535518:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.28192138671875	2	487.776219	973.537886	0.31417	0.00015325	-3.7635	-0.0018358	-3.4494	-0.0016825	487.77432614578447	57.376	0.60348	57.201	56.931	57.534	-0.1749					44	15	4	0	0	0	0.024354	1	6458	6458		38.806	8.3025	1	1566400	+		40206	32511	27680	27733	45634	45634					0.05005820291000873
LGQCSHGGQP	10	Unmodified	_LGQCSHGGQP_					0	0	0			REV__ENSG00000123999|ENST00000243786|INHA	REV__ENSG00000123999|ENST00000243786|INHA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.26593017578125	2	492.221808	982.429063	0.040642	2.0005E-05	1.74	0.00085644	1.7806	0.00087645	492.22140254953763	37.302	0.21459	37.239	37.091	37.305	-0.063389					8	5	2	0	0	0	0.03519	1	2992	2992		76.774	5.4784	1	67132	+		40207	22723	27681	27734	45635	45635					-0.06285390679261127
LGQEGQLW	8	Unmodified	_LGQEGQLW_					0	0	0		nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENST00000566468.1_1_15:74883534-74883915:+|nuORF	nc|ENSG00000179361|Q8IVW6-3|ARID3B	nc|ENSG00000179361|Q8IVW6-3|ARID3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.29864501953125	2	465.737617	929.460681	0.10865	5.0603E-05	-2.4361	-0.0011346	-2.3274	-0.001084	465.7363036172368	18.243	0.24787	18.039	17.866	18.113	-0.20371					7	4	2	0	0	0	0.027866	1	274	274		23.042	1.0826	1	12850			40208	18554	27682	27735	45636	45636					-0.006870746536719707
LGQISCRD	8	Unmodified	_LGQISCRD_					0	0	0		ENST00000430515.1_1_3:194476389-194476791:+|nuORF	ENST00000430515.1_1_3:194476389-194476791:+|nuORF	ENST00000430515.1_1_3:194476389-194476791:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.2613220214844	2	446.221277	890.428001	-0.28926	-0.00012907	0.50523	0.00022545	0.21597	9.6372E-05	446.22140438420786	26.578	3.9339	26.554	24.377	28.311	-0.023088					175	96	3	0	0	0	0.027866	1	1311	1311		60.972	13.056	1	511180			40209	14173	27683	27736	45637	45637					-0.02159605048177582
LGQKWAQLD	9	Unmodified	_LGQKWAQLD_					0	0	0			REV__ENST00000396504.6_1_22:41923400-41923763:-|nuORF	REV__ENST00000396504.6_1_22:41923400-41923763:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.3007202148438	2	529.785099	1057.55564	-1.0706	-0.00056718	-1.2039	-0.00063781	-2.2745	-0.001205	529.7843335349826	30.087	0.41653	30.161	30.003	30.42	0.074314					13	7	2	0	0	0	0.024427	1	1842	1842		42.396	3.59	1	72808	+		40210	31739	27684	27737	45638	45638					0.029168588175025434
LGQKWAQLD	9	Unmodified	_LGQKWAQLD_					0	0	0			REV__ENST00000396504.6_1_22:41923400-41923763:-|nuORF	REV__ENST00000396504.6_1_22:41923400-41923763:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.785099	1057.55564	-1.9143	-0.0010141	0.83598	0.00044289	-1.0783	-0.00057125	529.7853138521842	29.908	0.4458	29.908	29.611	30.057	0	-0.12652	0.00090831	NaN	42.396	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68658	+		40211	31739	27684	27737							0.029168588175025434
LGQLLRGLL	9	Unmodified	_LGQLLRGLL_					0	0	0			REV__ENSG00000187492|ENST00000412678|CDHR4	REV__ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.823974609375	2	491.824027	981.633501	-0.70878	-0.00034859	0.30612	0.00015056	-0.40266	-0.00019804	491.8241502379091	70.19	0.90935	69.922	69.327	70.237	-0.26724					59	21	5	0	0	0	0.17455	1	8183	8183		94.006	0	1	8489700	+		40212	27934	27685	27738	45639	45639					0.1419491647357063
LGQLVRLAL	9	Unmodified	_LGQLVRLAL_					0	0	0			REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF	REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.8238220214844	2	491.824027	981.633501	-0.70878	-0.00034859	0.30612	0.00015056	-0.40266	-0.00019804	491.8241502379091	70.19	0.90935	69.922	69.327	70.237	-0.26724					59	21	5	0	0	0	0.08613	1	8168	8168		115.46	9.0438	1	8489700	+		40213	30084	27686	27739	45640	45640					0.14194916473547892
LGQLVRLAL	9	Unmodified	_LGQLVRLAL_					0	0	0			REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF	REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.8237609863281	2	491.824027	981.633501	0.088461	4.3507E-05	-0.49122	-0.00024159	-0.40276	-0.00019809	491.8237772370958	70.049	0.73724	69.799	69.483	70.22	-0.25063					55	17	4	0	0	0	0.18915	1	8184	8184		90.777	8.4716	1	9033600	+		40214	30084	27686	27739	45641	45641					0.14194916473547892
LGQLVRLAL	9	Unmodified	_LGQLVRLAL_					0	0	0			REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF	REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.8235778808594	2	491.824027	981.633501	0.25956	0.00012766	-0.75691	-0.00037227	-0.49736	-0.00024461	491.82362427095893	70.007	0.73326	69.785	69.432	70.165	-0.22245					63	17	5	0	0	0	0.08613	3	8128	8118;8128;8153		115.46	19.269	1	9032000	+		40215	30084	27686	27739	45642;45643;45644	45643					0.14194916473547892
LGQMPVLGGD	10	Unmodified	_LGQMPVLGGD_					0	0	0		ENST00000205194.4_1_19:55998666-55998924:+|nuORF	ENST00000205194.4_1_19:55998666-55998924:+|nuORF	ENST00000205194.4_1_19:55998666-55998924:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7623596191406	2	493.75241	985.490267	0.3127	0.0001544	-1.4495	-0.00071571	-1.1368	-0.00056131	493.7512094991068	77.713	0.62038	77.713	77.339	77.959	0					23	14	2	0	0	0	0.03519	1	9620	9620		56.721	21.569	1	125110			40216	11137	27687	27740	45645	45645					-0.0030587869983946803
LGQSEGVIEP	10	Unmodified	_LGQSEGVIEP_					0	0	0		nc|ENSG00000117475|Q9H2G9-2|BLZF1;ENSG00000117475|ENST00000367808|BLZF1	nc|ENSG00000117475|Q9H2G9-2|BLZF1	nc|ENSG00000117475|Q9H2G9-2|BLZF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.293701171875	2	514.766571	1027.51859	-0.78608	-0.00040465	0.43129	0.00022201	-0.35479	-0.00018263	514.7665090971344	39.947	0.45255	39.834	39.603	40.055	-0.11223					19	11	2	0	0	0	0.03519	1	3491	3491		51.193	0	1	337190			40217	3631	27688	27741	45646	45646					0.005931424811024044
LGQVPWLL	8	Unmodified	_LGQVPWLL_					0	0	0		ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.27679443359375	2	463.278921	924.543289	-0.34559	-0.0001601	-3.7549	-0.0017396	-4.1005	-0.0018997	463.2769519548531	56.579	0.98576	56.579	56.241	57.227	0					81	27	6	0	0	0	0.75307	1	6334	6334		62.978	2.5748	1	4698900			40218	8160	27689	27742	45647	45647					0.0779986714513825
LGQVPWLL	8	Unmodified	_LGQVPWLL_					0	0	0		ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.27691650390625	2	463.278921	924.543289	-0.51815	-0.00024005	-3.8619	-0.0017892	-4.3801	-0.0020292	463.27701311614084	56.718	1.1161	56.553	56.201	57.318	-0.16431					75	30	4	0	0	0	0.71717	1	6302	6302		65.897	2.919	1	5274300			40219	8160	27689	27742	45648	45648					0.0779986714513825
LGRAAARK	8	Unmodified	_LGRAAARK_					0	0	0		ENST00000548303.1_1_12:53819264-53819576:+|nuORF	ENST00000548303.1_1_12:53819264-53819576:+|nuORF	ENST00000548303.1_1_12:53819264-53819576:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7279968261719	2	421.769586	841.524619	-0.7897	-0.00033307	-2.969	-0.0012522	-3.7587	-0.0015853	421.7696165373949	25.343	0.27465	25.343	25.211	25.486	0					8	6	2	0	0	0	0.027866	1	1181	1181		19.36	9.8894	1	37319			40220	16551	27690	27743	45649	45649					0.09751750293924033
LGRAAARK	8	Unmodified	_LGRAAARK_					0	0	0		ENST00000548303.1_1_12:53819264-53819576:+|nuORF	ENST00000548303.1_1_12:53819264-53819576:+|nuORF	ENST00000548303.1_1_12:53819264-53819576:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	421.769586	841.524619	0.42776	0.00018042	-9.1473	-0.003858	-8.7195	-0.0036776	421.7651718704868	25.458	0.28799	25.286	25.118	25.406	-0.17151	-0.028096	-0.0046033	NaN	12.959	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31125			40221	16551	27690	27743							0.09751750293924033
LGRAFSYTP	9	Unmodified	_LGRAFSYTP_					0	0	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.2656555175781	2	506.266542	1010.51853	-0.9751	-0.00049366	0.36651	0.00018555	-0.60859	-0.00030811	506.2666254725233	62.709	1.1122	62.709	62.446	63.558	0					51	28	2	0	0	0	0.43973	1	7316	7316		63.306	2.3343	1	3607200			40222	1516	27691	27744	45650	45650					0.01369187271757255
LGRALSAPL	9	Unmodified	_LGRALSAPL_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.2786560058594	2	449.279452	896.544351	-0.47153	-0.00021185	0.67983	0.00030543	0.2083	9.3587E-05	449.2796187371609	57.551	1.0558	57.646	57.281	58.337	0.095306					46	28	2	0	0	0	0.16468	1	6386	6386		96.19	2.184	1	2806900			40223	7551	27692	27745	45651	45651					0.09194081514021946
LGRAMESLV	9	Unmodified	_LGRAMESLV_					0	0	0		nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-9|DMD	nc|ENSG00000198947|P11532-15|DMD	nc|ENSG00000198947|P11532-15|DMD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2684631347656	2	488.268227	974.521901	-0.8418	-0.00041102	0.86226	0.00042101	0.020461	9.9903E-06	488.2687571734604	43.469	1.4289	43.469	42.786	44.215	0					105	39	4	0	0	0	0.4752	1	4075	4075		60.972	3.1607	1	11738000			40224	18652	27693	27746	45652	45652					0.033621140541072236
LGRAPALGR	9	Unmodified	_LGRAPALGR_					0	0	0		ENSG00000163738|ENST00000325278|MTHFD2L;ENST00000423607.5_1_4:75023855-75040225:+|nuORF;ENST00000461101.1_1_4:75023855-75025862:+|nuORF;nc|ENSG00000163738|Q9H903-5|MTHFD2L	ENSG00000163738|ENST00000325278|MTHFD2L	ENSG00000163738|ENST00000325278|MTHFD2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7586364746094	2	455.782693	909.550834	-1.1439	-0.00052136	0.091223	4.1578E-05	-1.0526	-0.00047978	455.78306473013697	33.65	0.35366	33.484	33.278	33.632	-0.16565					10	8	2	0	0	0	0.024436	1	2374	2374		30.504	3.7075	1	49673			40225	7138	27694	27747	45653	45653					0.09244019465415931
LGRARTVQ	8	Unmodified	_LGRARTVQ_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7722473144531	2	450.772326	899.530098	0.46316	0.00020878	-0.82932	-0.00037383	-0.36616	-0.00016506	450.7719794388524	19.665	1.2182	19.504	19.233	20.451	-0.16079					52	24	4	0	0	0	0.99042	1	442	442		38.806	0	1	2049800	+		40226	21882	27695	27748	45654	45654					0.07631429085745367
LGRATSHK	8	Unmodified	_LGRATSHK_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.25146484375	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.0574	1	9804	9804		26.693	1.2427	1	1590300	+		40227	28316	27696	27749	45655	45655					0.04839453677379879
LGREIIKLT	9	Unmodified	_LGREIIKLT_					0	0	0		nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149	nc|ENSG00000181982|Q6ZUS6-6|CCDC149	nc|ENSG00000181982|Q6ZUS6-6|CCDC149	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7929077148438	2	521.834591	1041.65463	-0.97222	-0.00050734	-0.34154	-0.00017823	-1.3138	-0.00068557	521.8344502050047	45.033	0.38231	44.884	44.697	45.079	-0.1488					15	10	2	0	0	0	0.0242	1	4347	4347		60.118	0	1	145340			40228	9087	27697	27750	45656	45656					0.13546881782394848
LGREPGSLG	9	Unmodified	_LGREPGSLG_					0	0	0			REV__ENST00000590714.1_1_19:56109859-56110126:-|nuORF	REV__ENST00000590714.1_1_19:56109859-56110126:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2420349121094	2	443.243067	884.47158	-1.5616	-0.00069217	1.3354	0.00059192	-0.22616	-0.00010025	443.2436552231153	38.354	1.6453	38.381	37.884	39.529	0.027275					110	45	4	0	0	0	0.22754	1	3126	3126		85.359	0	1	22628000	+		40229	35707	27698	27751	45657	45657					0.02472327720636258
LGRGARERA	9	Unmodified	_LGRGARERA_					0	0	0			REV__ENST00000494263.5_1_2:219646539-219646824:+|nuORF	REV__ENST00000494263.5_1_2:219646539-219646824:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.28692626953125	2	493.286131	984.55771	-0.52724	-0.00026008	2.2266	0.0010984	1.6994	0.00083827	493.28730389578874	22.489	1.2845	22.304	21.952	23.237	-0.18539					84	27	5	0	0	0	0.53979	1	774	774		56.721	3.7844	1	15760000	+		40230	33779	27699	27752	45658	45658					0.06481332345992996
LGRGGSVVVK	10	Unmodified	_LGRGGSVVVK_					0	0	0			REV__ENST00000559758.5_1_15:76566725-76584849:-|nuORF	REV__ENST00000559758.5_1_15:76566725-76584849:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3034973144531	2	486.303458	970.592364	-0.23737	-0.00011543	-0.36501	-0.00017751	-0.60238	-0.00029294	486.3032593590347	47.428	1.5784	47.332	46.897	48.475	-0.096653					99	42	5	0	0	0	0.94316	1	4669	4669		51.193	1.6567	1	15954000	+		40231	24007	27700	27753	45659	45659					0.10589155434092845
LGRGTGHK	8	Unmodified	_LGRGTGHK_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.23779296875	2	413.238119	824.461684	0.37943	0.00015679	0.17917	7.4042E-05	0.5586	0.00023084	413.2380803151311	89.748	1.1119	89.762	89.297	90.409	0.013443					62	26	4	0	0	0	1.0516	1	11261	11261		29.15	2.3535	1	1651200	+		40232	21562	27701	27754	45660	45660					0.04243184505901354
LGRIRRIQHGT	11	Unmodified	_LGRIRRIQHGT_					0	0	0		ENST00000552876.5_1_12:53714710-53714983:-|nuORF	ENST00000552876.5_1_12:53714710-53714983:-|nuORF	ENST00000552876.5_1_12:53714710-53714983:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.8841857910156	3	436.265338	1305.77419	0.061503	2.6832E-05	2.3054	0.0010058	2.3669	0.0010326	436.2656478273055	18.169	0.39641	17.964	17.716	18.112	-0.20516					10	7	2	0	0	0	0.024821	1	277	277		25.126	16.327	1	17767			40233	16627	27702	27755	45661	45661					0.13352888179679212
LGRIRRIQHGT	11	Unmodified	_LGRIRRIQHGT_					0	0	0		ENST00000552876.5_1_12:53714710-53714983:-|nuORF	ENST00000552876.5_1_12:53714710-53714983:-|nuORF	ENST00000552876.5_1_12:53714710-53714983:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	436.265338	1305.77419	3.871	0.0016888	-2.8507	-0.0012436	1.0204	0.00044515	436.2641201204607	18.257	0.39709	18.015	17.677	18.074	-0.24256	0.02535	-0.0030309	NaN	19.263	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21685			40234	16627	27702	27755							0.13352888179679212
LGRIRSKFSNN	11	Unmodified	_LGRIRSKFSNN_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	646.365478515625	2	646.36511	1290.71567	0.10778	6.9666E-05	0.70606	0.00045637	0.81384	0.00052603	646.3656023172358	46.555	0.70706	46.294	45.93	46.637	-0.26118					53	18	4	0	0	0	1.0429	1	4494	4494		27.047	0.3544	1	8429100			40235	5077	27703	27756	45662	45662					0.08193786814581472
LGRKAAPK	8	Unmodified	_LGRKAAPK_					0	0	0		CELSR3|p.E2794K|1|0.25|ENSG00000008300|chr3:48642993-48642993|C/T|missense_variant	CELSR3|p.E2794K|1|0.25|ENSG00000008300|chr3:48642993-48642993|C/T|missense_variant	CELSR3|p.E2794K|1|0.25|ENSG00000008300|chr3:48642993-48642993|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5232238769531	2	420.774337	839.534121	0.37491	0.00015775	-0.77967	-0.00032806	-0.40476	-0.00017031	420.77394403540046	19.369	0.49463	19.208	19.034	19.529	-0.16079					13	9	2	0	0	0	0.027866	1	401	401		1.2052	0	1	38978			40236	249	27704	27757	45663	45663					0.10793518579453121
LGRLGILSVS	10	Unmodified	_LGRLGILSVS_					0	0	0		TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7354736328125	2	507.818941	1013.62333	-0.25696	-0.00013049	0.72232	0.00036681	0.46535	0.00023631	507.81904889017596	39.547	0.53914	39.382	39.153	39.692	-0.16459					21	13	2	0	0	0	0.03519	1	3389	3389		39.253	2.8061	1	142890			40237	5884	27705	27758	45664	45664					0.11706308748341598
LGRLGILSVS	10	Unmodified	_LGRLGILSVS_					0	0	0		TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7361145019531	2	507.818941	1013.62333	-0.2004	-0.00010177	0.47038	0.00023887	0.26998	0.0001371	507.8191241521866	39.666	0.49622	39.436	39.2	39.697	-0.23021					16	12	2	0	0	0	0.03519	1	3388	3388		26.693	0	1	142880			40238	5884	27705	27758	45665	45665					0.11706308748341598
LGRLLQYLFYR	11	Unmodified	_LGRLLQYLFYR_					0	0	0			REV__nc|ENSG00000166484|Q13164-2|MAPK7	REV__nc|ENSG00000166484|Q13164-2|MAPK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.28363037109375	3	481.281995	1440.82415	-0.010732	-5.1652E-06	3.1733	0.0015273	3.1626	0.0015221	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.0739	1	12876	12876		18.531	2.0012	1	1064100	+		40239	26026	27706	27759	45666	45666					0.12137578064971422
LGRLLSAARTR	11	Unmodified	_LGRLLSAARTR_					0	0	0			REV__ENSG00000155530|ENST00000285928|LRGUK	REV__ENSG00000155530|ENST00000285928|LRGUK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	607.3775024414062	2	607.37802	1212.74149	-1.0698	-0.00064978	0.16815	0.00010213	-0.90165	-0.00054764	607.3780230672708	97.661	0.82259	97.661	97.325	98.148	0					35	18	2	0	0	0	0.98625	1	12459	12459		39.873	2.365	1	366750	+		40240	25010	27707	27760	45667	45667					0.1436268105680938
LGRLSGFSD	9	Unmodified	_LGRLSGFSD_					0	0	0			REV__ENST00000591348.5_1_1:16802327-16812083:-|nuORF	REV__ENST00000591348.5_1_1:16802327-16812083:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.96148681640625	2	476.248349	950.482145	1.8603	0.00088594	-0.54555	-0.00025982	1.3147	0.00062612	476.24759411473707	63.636	0.21301	63.69	63.555	63.768	0.054104					9	5	2	0	0	0	0.0242	1	7356	7356		42.864	21.917	1	65616	+		40241	35720	27708	27761	45668	45668					0.004923103750456903
LGRLTGPSLL	10	Unmodified	_LGRLTGPSLL_					0	0	0			REV__ENSG00000283632|ENST00000413988|EXOC3L2	REV__ENSG00000283632|ENST00000413988|EXOC3L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8176879882812	2	513.818941	1025.62333	0.26414	0.00013572	-1.3073	-0.0006717	-1.0431	-0.00053598	513.818270164662	72.272	1.5656	72.282	71.953	73.519	0.0097733					103	39	4	0	0	0	0.80817	1	8758	8758		60.118	3.3972	1	21406000	+		40242	29248	27709	27762	45669	45669					0.11154308748336916
LGRLVLTHL	9	Unmodified	_LGRLVLTHL_					0	0	0		ENSG00000132517|ENST00000254853|SLC52A1;ENST00000575919.1_1_17:4936703-4937901:-|nuORF;nc|ENSG00000132517|Q9NWF4-2|SLC52A1;ENST00000573674.1_1_17:4937400-4937901:-|nuORF	ENSG00000132517|ENST00000254853|SLC52A1	ENSG00000132517|ENST00000254853|SLC52A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.3274230957031	2	511.329476	1020.6444	-0.5065	-0.00025899	-4.1239	-0.0021087	-4.6304	-0.0023676	511.32724468367337	96.12	1.2357	96.12	95.778	97.014	0					68	28	4	0	0	0	0.70186	1	12244	12244		45.952	8.7928	1	1589000			40243	4615	27710	27763	45670	45670					0.13490318847846083
LGRNGVEEIR	10	Unmodified	_LGRNGVEEIR_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.8167724609375	2	571.817461	1141.62037	-0.24717	-0.00014134	0.022438	1.283E-05	-0.22473	-0.00012851	571.8173923714517	19.738	0.71766	19.619	19.348	20.066	-0.11872					36	14	4	0	0	0	0.72729	1	441	441		65.465	7.2191	1	306540			40244	4782	27711	27764	45671	45671					0.05522433623514189
LGRPGPAR	8	Unmodified	_LGRPGPAR_					0	0	0			REV__ENST00000337852.10_1_X:48566837-48567230:+|nuORF	REV__ENST00000337852.10_1_X:48566837-48567230:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1946716308594	2	412.248486	822.48242	0.35547	0.00014654	-3.1685	-0.0013062	-2.813	-0.0011597	412.24858245610056	83.639	0.71952	83.5	83.037	83.757	-0.1386					22	16	2	0	0	0	0.027866	1	10023	10023		10.866	3.6722	1	81305	+		40245	30569	27712	27765	45672	45672					0.06407774885553863
LGRPKPTV	8	Unmodified	_LGRPKPTV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2742919921875	2	434.27417	866.533787	-0.22234	-9.6558E-05	0.065116	2.8278E-05	-0.15723	-6.828E-05	434.27417487933866	47.873	1.456	47.72	47.336	48.792	-0.15301					85	42	4	0	0	0	0.74904	1	4796	4796		63.306	0	1	19138000			40246	6479	27713	27766	45673	45673					0.09518098859609836
LGRPKPTV	8	Unmodified	_LGRPKPTV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2743225097656	2	434.27417	866.533787	-0.41972	-0.00018227	0.26555	0.00011532	-0.15416	-6.695E-05	434.2742455559153	47.633	1.5808	47.692	47.354	48.935	0.059093					80	45	4	0	0	0	0.74904	1	4734	4734		63.306	0.32785	1	18334000			40247	6479	27713	27766	45674	45674					0.09518098859609836
LGRQAPIL	8	Unmodified	_LGRQAPIL_					0	0	0			REV__ENST00000528392.5_2_8:146219922-146225127:-|nuORF	REV__ENST00000528392.5_2_8:146219922-146225127:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.2739562988281	2	434.27417	866.533787	-0.15626	-6.7861E-05	-0.040256	-1.7482E-05	-0.19652	-8.5343E-05	434.27415018264725	47.732	1.6469	47.732	47.252	48.899	0					86	48	4	0	0	0	0.71717	1	4814	4814		65.897	2.919	1	18306000	+		40248	32271	27714	27767	45675	45675					0.09518098859598467
LGRQCVPL	8	Unmodified	_LGRQCVPL_					0	0	0		ENST00000462349.5_1_21:44473992-44479496:-|nuORF	ENST00000462349.5_1_21:44473992-44479496:-|nuORF	ENST00000462349.5_1_21:44473992-44479496:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.2518310546875	2	443.25238	884.490207	-0.67704	-0.0003001	0.35986	0.00015951	-0.31718	-0.00014059	443.2525389336575	45.236	1.3995	45.137	44.749	46.149	-0.099449					103	38	4	0	0	0	0.48546	2	4276	4276;4288		86.935	6.9954	1	20206000			40249	14704	27715	27768	45676;45677	45676					0.0433416609082542
LGRVFLLSAVF	11	Unmodified	_LGRVFLLSAVF_					0	0	0		ENSG00000244219|ENST00000431679|TMEM225B	ENSG00000244219|ENST00000431679|TMEM225B	ENSG00000244219|ENST00000431679|TMEM225B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	611.3564453125	2	611.371341	1220.72813	-1.1873	-0.00072591	3.4536	0.0021114	2.2662	0.0013855	611.3727360022738	94.702	0.21682	94.706	94.575	94.791	0.0041122					6	4	2	0	0	0	0.024727	1	11980	11980		31.53	4.8369	1	59044			40250	10819	27716	27769	45678	45678					0.1265943022490319
LGRVNPEL	8	Unmodified	_LGRVNPEL_					0	0	0			REV__ENST00000549137.1_1_12:50039600-50046016:-|nuORF	REV__ENST00000549137.1_1_12:50039600-50046016:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2705078125	2	449.261259	896.507966	0.47386	0.00021289	-0.2036	-9.1469E-05	0.27026	0.00012142	449.2606143579356	21.248	0.33804	21.071	20.918	21.256	-0.17721					10	6	2	0	0	0	0.027866	1	644	644		25.45	0	1	14242	+		40251	25398	27717	27770	45679	45679					0.055572046173210765
LGRVRAHA	8	Unmodified	_LGRVRAHA_					0	0	0		ENST00000585075.1_1_17:73267491-73267800:+|nuORF;ENST00000582668.1_1_17:73267497-73269738:+|nuORF	ENST00000585075.1_1_17:73267491-73267800:+|nuORF	ENST00000585075.1_1_17:73267491-73267800:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7527160644531	2	440.26721	878.519868	2.2353	0.00098411	-2.7148	-0.0011952	-0.47954	-0.00021113	440.26575810692293	23.654	0.37617	23.463	23.284	23.66	-0.19117					12	8	2	0	0	0	0.027866	1	918	918		26.796	0	1	34822			40252	17183	27718	27771	45680	45680					0.07574866151173865
LGRVVFKLMD	10	Unmodified	_LGRVVFKLMD_					0	0	0		ENST00000462422.5_1_1:246216281-246670414:-|nuORF;ENST00000470863.1_1_1:246490478-246670519:-|nuORF;nc|ENSG00000185420|Q9H7B4-3|SMYD3;ENSG00000185420|ENST00000490107|SMYD3;TFB2M-SMYD3|1|fusion	ENST00000462422.5_1_1:246216281-246670414:-|nuORF	ENST00000462422.5_1_1:246216281-246670414:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.343505859375	2	589.341726	1176.6689	-1.1102	-0.00065427	3.0265	0.0017836	1.9163	0.0011294	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	1.0992	1	11567	11567		32.812	6.1195	1	4794700			40253	9436	27719	27772	45681	45681					0.08763210939059718
LGRWEPLL	8	Unmodified	_LGRWEPLL_					0	0	0		ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2871398925781	2	492.287277	982.560001	-0.48746	-0.00023997	0.51709	0.00025456	0.029638	1.4591E-05	492.28719818613536	75.765	1.3813	75.765	75.378	76.759	0					84	35	5	0	0	0	0.50239	3	9319	9319;9329;9344		85.359	11.455	1	2686800			40254	12508	27720	27773	45682;45683;45684	45682					0.06802368031083006
LGRWEPLL	8	Unmodified	_LGRWEPLL_					0	0	0		ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2873229980469	2	492.287277	982.560001	-0.41811	-0.00020583	0.43317	0.00021324	0.015062	7.4148E-06	492.2871656507854	75.989	1.3534	75.744	75.443	76.797	-0.24455					84	34	4	0	0	0	0.39824	3	9335	9312;9322;9335		97.473	15.168	1	3028100			40255	12508	27720	27773	45685;45686;45687	45687					0.06802368031083006
LGRWEPLL	8	Unmodified	_LGRWEPLL_					0	0	0		ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.28704833984375	2	492.287277	982.560001	0.18433	9.0741E-05	-0.084334	-4.1517E-05	0.099991	4.9225E-05	492.28689660164446	75.781	1.4156	75.793	75.401	76.816	0.011635					81	36	3	0	0	0	0.56067	2	9247	9247;9259		79.939	5.6842	1	3257000			40256	12508	27720	27773	45688;45689	45688					0.06802368031083006
LGRWEPLL	8	Unmodified	_LGRWEPLL_					0	0	0		ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.287277	982.560001	-0.88049	-0.00043345	-2.1773	-0.0010719	-3.0578	-0.0015053	492.28554572318	75.875	0.46872	75.602	75.306	75.775	-0.27266	-0.048625	-0.0021947	NaN	97.473	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98237			40257	12508	27720	27773							0.06802368031083006
LGRWEPLL	8	Unmodified	_LGRWEPLL_					0	0	0		ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.287277	982.560001	-0.10407	-5.1232E-05	-1.6591	-0.00081676	-1.7632	-0.00086799	492.286103285395	75.786	0.42424	75.528	75.398	75.822	-0.25865	-0.12321	-0.0016844	NaN	97.473	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82183			40258	12508	27720	27773							0.06802368031083006
LGRWEPLL	8	Unmodified	_LGRWEPLL_					0	0	0		ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.287277	982.560001	0.26972	0.00013278	-3.4309	-0.001689	-3.1611	-0.0015562	492.28491225139885	75.649	0.46478	75.474	75.194	75.659	-0.17548	-0.17702	-0.0034289	NaN	97.473	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94521			40259	12508	27720	27773							0.06802368031083006
LGRWKPAN	8	Unmodified	_LGRWKPAN_					0	0	0			REV__ENSG00000115904|ENST00000402219|SOS1	REV__ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.3026428222656	2	471.269419	940.524284	-0.68189	-0.00032136	-0.30651	-0.00014445	-0.98841	-0.00046581	471.2691213345023	67.218	0.86987	66.98	66.72	67.589	-0.23814					45	20	3	0	0	0	0.027866	1	7795	7795		26.796	11.154	1	1384200	+		40260	22239	27721	27774	45690	45690					0.05164330574075393
LGSGSRLDF	9	Unmodified	_LGSGSRLDF_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	476.25006103515625	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.61	1	103.61	103.11	104.11	0.0054245								0	0	0	0.65896	1	13257	13257		29.15	0.89528	1		+		40261	29824	27722	27775	45691	45691					0.004923103750456903
LGSIRQEKV	9	Unmodified	_LGSIRQEKV_					0	0	0			REV__SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	REV__SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.30908203125	2	515.306198	1028.59784	0.32605	0.00016801	3.5603	0.0018347	3.8864	0.0020027	515.3078097428174	87.588	1.2261	87.552	86.983	88.209	-0.035362					76	25	4	0	0	0	0.23085	1	11047	11047		84.916	5.2029	1	1044800	+		40262	19789	27723	27776	45692	45692					0.08468834225891442
LGSIWNGPNA	10	Unmodified	_LGSIWNGPNA_					0	0	0			REV__ENSG00000253831|ENST00000454449|ETV3L	REV__ENSG00000253831|ENST00000454449|ETV3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3133544921875	2	514.761623	1027.50869	0.13608	7.0048E-05	-0.85092	-0.00043802	-0.71484	-0.00036797	515.2622663528132	88.466	0.51115	88.466	88.383	88.894	0					15	11	2	0	0	0	0.03519	1	11181	11181		39.253	0	1	35220	+		40263	29045	27724	27777	45693	45693					-0.003960007336445415
LGSLFMKLI	9	Unmodified	_LGSLFMKLI_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7282409667969	2	511.309364	1020.60417	-0.094455	-4.8296E-05	3.4413	0.0017596	3.3469	0.0017113	511.31107214194475	54.623	0.62405	54.721	54.458	55.083	0.098011					38	17	3	0	0	0	0.023181	1	5965	5965		42.396	0	1	1010900	+		40264	27671	27725	27778	45694	45694					0.09469636133053427
LGSLMTSVM	9	Unmodified	_LGSLMTSVM_					0	0	0			REV__nc|ENSG00000166922|P05408-2|SCG5	REV__nc|ENSG00000166922|P05408-2|SCG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7503967285156	2	469.737914	937.461275	-0.80068	-0.00037611	1.5234	0.00071561	0.72275	0.0003395	469.73850353690256	30.71	0.91431	30.71	30.343	31.257	0					50	21	3	0	0	0	0.024386	1	1952	1952		25.45	4.5032	1	382350	+		40265	26082	27726	27779	45695	45695					-0.009957393204786058
LGSLQFRAE	9	Unmodified	_LGSLQFRAE_					0	0	0			REV__ENST00000587962.6_1_19:2233841-2234202:-|nuORF	REV__ENST00000587962.6_1_19:2233841-2234202:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7282409667969	2	510.777274	1019.53999	-0.67993	-0.00034729	1.3888	0.00070936	0.70887	0.00036207	511.2810823809822	54.94	0.16669	55.038	54.916	55.083	0.098015					6	4	2	0	0	0	0.018983	1	5965	5965		82.241	2.7895	1	108420	+		40266	21477	27727	27780	45696	45696					0.031005723004682295
LGSLQFRAE	9	Unmodified	_LGSLQFRAE_					0	0	0			REV__ENST00000587962.6_1_19:2233841-2234202:-|nuORF	REV__ENST00000587962.6_1_19:2233841-2234202:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.777274	1019.53999	-0.26872	-0.00013725	2.825	0.001443	2.5563	0.0013057	510.77872369613976	55.1	0.32586	54.869	54.601	54.927	-0.23087	-0.042491	0.00049428	NaN	82.241	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154110	+		40267	21477	27727	27780							0.031005723004682295
LGSLQPPLL	9	Unmodified	_LGSLQPPLL_					0	0	0		ENST00000533877.1_1_7:6381544-6388389:-|nuORF	ENST00000533877.1_1_7:6381544-6388389:-|nuORF	ENST00000533877.1_1_7:6381544-6388389:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	469.2889709472656	2	469.289485	936.564418	-0.56698	-0.00026608	0.22761	0.00010682	-0.33937	-0.00015926	469.2893815404194	48.943	0.86871	48.663	48.218	49.086	-0.27977					48	23	3	0	0	0	0.35646	1	4871	4871		68.787	2.9837	1	2903000			40268	16322	27728	27781	45697	45697					0.09359832453992567
LGSLQPPPLAL	11	Unmodified	_LGSLQPPPLAL_					0	0	0		nc|ENSG00000050767|Q86Y22-2|COL23A1	nc|ENSG00000050767|Q86Y22-2|COL23A1	nc|ENSG00000050767|Q86Y22-2|COL23A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.33251953125	2	553.334424	1104.6543	0.59374	0.00032854	-4.2368	-0.0023444	-3.6431	-0.0020159	553.3319086030377	95.481	1.1629	95.358	94.985	96.148	-0.12251					95	26	5	0	0	0	1.0392	1	11787	11787		28.081	0.19925	1	4038100			40269	18047	27729	27782	45698	45698					0.10615462062560255
LGSPLIAPL	9	Unmodified	_LGSPLIAPL_					0	0	0			REV__ENST00000293288.12_1_19:49464659-49464716:+|nuORF	REV__ENST00000293288.12_1_19:49464659-49464716:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.76629638671875	2	440.778754	879.542954	-1.1249	-0.00049585	2.651	0.0011685	1.5261	0.00067265	440.7795059935699	37.354	0.34914	37.134	36.962	37.311	-0.2195					19	8	3	0	0	0	0.024466	1	2979	2979		25.45	0	1	548840	+		40270	29956	27730	27783	45699	45699					0.09836447425266215
LGSPPKRGPL	10	Unmodified	_LGSPPKRGPL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.727783203125	2	511.311284	1020.60801	-0.21195	-0.00010837	-0.0076862	-3.93E-06	-0.21964	-0.0001123	511.31118608206214	54.907	0.69199	54.757	54.507	55.199	-0.15036					38	19	3	0	0	0	0.03519	1	6051	6051		82.241	18.934	1	1119600			40271	18548	27731	27784	45700	45700					0.09853441951145214
LGSPRGLSL	9	Unmodified	_LGSPRGLSL_					0	0	0		ENST00000574406.1_1_17:5405270-5405480:-|nuORF	ENST00000574406.1_1_17:5405270-5405480:-|nuORF	ENST00000574406.1_1_17:5405270-5405480:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2690124511719	2	450.269084	898.523616	-0.010534	-4.7432E-06	-0.26401	-0.00011888	-0.27455	-0.00012362	450.26886631273015	43.787	0.95152	43.818	43.486	44.437	0.030827					71	26	5	0	0	0	0.26966	1	4056	4056		79.713	0.26157	1	6325000			40272	17084	27732	27785	45701	45701					0.07029491134380805
LGSRRLLPWL	10	Unmodified	_LGSRRLLPWL_					0	0	0			REV__ENST00000366503.2_1_1:247202745-247202820:-|nuORF	REV__ENST00000366503.2_1_1:247202745-247202820:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8722534179688	2	605.874582	1209.73461	-0.92862	-0.00056263	-3.3395	-0.0020233	-4.2682	-0.002586	605.8723603924029	98.583	1.08	98.583	98.233	99.313	0					66	24	4	0	0	0	1.1265	1	12574	12574		24.519	0.31644	1	1252900	+		40273	30973	27733	27786	45702	45702					0.13813368176261065
LGSRRLLPWL	10	Unmodified	_LGSRRLLPWL_					0	0	0			REV__ENST00000366503.2_1_1:247202745-247202820:-|nuORF	REV__ENST00000366503.2_1_1:247202745-247202820:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.87158203125	2	605.874582	1209.73461	-0.60045	-0.0003638	-3.6392	-0.0022049	-4.2397	-0.0025687	605.8721410970385	98.62	1.0824	98.616	98.307	99.389	-0.0038834					72	24	4	0	0	0	1.1088	1	12505	12505		31.53	3.4483	1	1075200	+		40274	30973	27733	27786	45703	45703					0.13813368176261065
LGSVEGKALP	10	Unmodified	_LGSVEGKALP_					0	0	0			REV__nc|ENSG00000145996|Q5VV42-2|CDKAL1	REV__nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7815246582031	2	485.782025	969.549496	2.2886	0.0011118	-2.3353	-0.0011345	-0.046731	-2.2701E-05	485.780691685972	24.389	0.74083	24.209	23.893	24.634	-0.18089					45	16	4	0	0	0	0.48123	1	1043	1043		90.37	2.6155	1	971480	+		40275	24449	27734	27787	45704	45704					0.06350340586004677
LGSVHPTPLL	10	Unmodified	_LGSVHPTPLL_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7911376953125	2	517.305667	1032.59678	0.57601	0.00029797	1.8261	0.00094466	2.4021	0.0012426	517.306413852545	18.536	0.88887	18.379	18.05	18.939	-0.15637					30	17	3	0	0	0	0.03519	1	313	313		44.117	14.967	1	90097	+		40276	29083	27735	27788	45705	45705					0.08178619856994374
LGSVIFVY	8	Unmodified	_LGSVIFVY_					0	0	0		ENSG00000118432|ENST00000369501|CNR1;nc|ENSG00000118432|P21554-3|CNR1;nc|ENSG00000118432|P21554-2|CNR1	ENSG00000118432|ENST00000369501|CNR1	ENSG00000118432|ENST00000369501|CNR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.2738037109375	2	449.257654	896.500755	-0.26083	-0.00011718	2.6928	0.0012097	2.4319	0.0010926	449.25997683288244	56.584	0.20564	56.682	56.546	56.752	0.097893					8	5	2	0	0	0	0.027866	1	6227	6227		74.517	29.986	1	74097			40277	3682	27736	27789	45706	45706					0.04836472016893367
LGSVRTIM	8	Unmodified	_LGSVRTIM_					0	0	0		ENST00000012134.7_2_6:143096218-143158117:-|nuORF	ENST00000012134.7_2_6:143096218-143158117:-|nuORF	ENST00000012134.7_2_6:143096218-143158117:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.7521057128906	2	438.752213	875.489873	-0.54406	-0.00023871	0.53947	0.00023669	-0.0045953	-2.0162E-06	438.75237986089786	39.952	0.81815	39.802	39.513	40.331	-0.1497					54	21	4	0	0	0	0.77775	1	3431	3431		60.972	0.85368	1	6727900			40278	11100	27737	27790	45707	45707					0.047147463709848125
LGTERPLGV	9	Unmodified	_LGTERPLGV_					0	0	0			REV__ENST00000522476.5_1_8:134276792-134276873:-|nuORF	REV__ENST00000522476.5_1_8:134276792-134276873:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2742919921875	2	471.274367	940.53418	0.37885	0.00017854	-0.56963	-0.00026845	-0.19079	-8.9913E-05	471.27400956075775	42.243	1.0032	42.269	41.857	42.861	0.026012					70	28	4	0	0	0	0.22754	1	3815	3815		85.359	14.064	1	7592500	+		40279	34338	27738	27791	45708	45708					0.06153473788822339
LGTERPLGV	9	Unmodified	_LGTERPLGV_					0	0	0			REV__ENST00000522476.5_1_8:134276792-134276873:-|nuORF	REV__ENST00000522476.5_1_8:134276792-134276873:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	471.274367	940.53418	0.23728	0.00011183	-0.35717	-0.00016832	-0.11989	-5.6499E-05	471.2741146106928	42.31	0.99088	42.178	41.789	42.78	-0.13219	-0.045802	9.5918E-05	NaN	85.359	71	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7100100	+		40280	34338	27738	27791							0.06153473788822339
LGTGKAITVH	10	Unmodified	_LGTGKAITVH_					0	0	0			REV__IARS2|p.M384I|1|0.38|ENSG00000067704|chr1:220105976-220105976|G/T|missense_variant	REV__IARS2|p.M384I|1|0.38|ENSG00000067704|chr1:220105976-220105976|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.79583740234375	2	498.795466	995.57638	-0.0078223	-3.9017E-06	1.3557	0.00067621	1.3479	0.00067231	498.79599799080165	18.107	0.74334	17.9	17.664	18.408	-0.20669					37	14	4	0	0	0	0.91678	1	261	261		52.937	1.6012	1	222430	+		40281	36140	27739	27792	45709	45709					0.07841449197178463
LGTGYSVL	8	Unmodified	_LGTGYSVL_					0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.23529052734375	2	405.223811	808.433069	-0.31638	-0.00012821	-2.8494	-0.0011547	-3.1658	-0.0012829	405.22263847708706	23.972	0.43202	23.925	23.656	24.088	-0.047146					12	9	2	0	0	0	0.027866	1	957	957		20.482	5.8177	1	58955	+		40282	20571	27740	27793	45710	45710					0.021190220860944464
LGTIPVPKG	9	Unmodified	_LGTIPVPKG_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7660217285156	2	441.276378	880.538203	-0.015537	-6.856E-06	4.3548	0.0019217	4.3393	0.0019148	441.27830596771497	37.207	0.1875	37.014	36.889	37.076	-0.193					8	4	3	0	0	0	0.024354	1	2968	2968		47.916	28.556	1	119000			40283	4934	27741	27794	45711	45711					0.09315563282518724
LGTLALVAP	9	Unmodified	_LGTLALVAP_					0	0	0			REV__ENSG00000119147|ENST00000238044|ECRG4	REV__ENSG00000119147|ENST00000238044|ECRG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7559509277344	2	427.770929	853.527304	-0.094012	-4.0216E-05	0.019325	8.2665E-06	-0.074688	-3.1949E-05	427.7707882347398	41.851	1.4988	41.619	40.923	42.422	-0.23186					81	39	3	0	0	0	0.023254	1	3684	3684		52.299	18.784	1	535150	+		40284	22443	27742	27795	45712	45712					0.09468160908227219
LGTTVKLME	9	Unmodified	_LGTTVKLME_					0	0	0		ENSG00000073598|ENST00000158009|FNDC8	ENSG00000073598|ENST00000158009|FNDC8	ENSG00000073598|ENST00000158009|FNDC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.27587890625	2	496.27826	990.541968	-0.49769	-0.00024699	-2.8668	-0.0014227	-3.3645	-0.0016697	496.27668768819393	84.976	1.1203	84.918	84.442	85.563	-0.05761					74	26	4	0	0	0	0.2508	1	10639	10639		82.241	2.7895	1	3718700			40285	1510	27743	27796	45713	45713					0.046318649940758405
LGTVLTIMLE	10	Unmodified	_LGTVLTIMLE_					0	0	0			REV__nc|ENSG00000171109|Q8IWA4-3|MFN1	REV__nc|ENSG00000171109|Q8IWA4-3|MFN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3167724609375	2	545.314843	1088.61513	-0.47782	-0.00026056	3.8726	0.0021118	3.3948	0.0018512	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.089	1	10804	10804		34.173	0.25091	1	17400000	+		40286	26544	27744	27797	45714	45714					0.07436993716692086
LGTVTTKL	8	Unmodified	_LGTVTTKL_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.75054931640625	2	416.760561	831.506569	0.35349	0.00014732	2.1415	0.0008925	2.495	0.0010398	416.7611330445664	61.432	0.21412	61.205	61.047	61.261	-0.22663					7	5	2	0	0	0	0.027866	1	7063	7063		88.643	0	1	93877	+		40287	37254	27745	27798	45715	45715					0.08407570528561337
LGTYLWTDV	9	Unmodified	_LGTYLWTDV_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2733764648438	2	534.274032	1066.53351	-0.14	-7.4799E-05	0.22142	0.0001183	0.081419	4.35E-05	534.2740868481011	88.34	0.91614	88.34	87.767	88.683	0					66	21	4	0	0	0	0.20304	1	11145	11145		88.643	3.2834	1	2083400			40288	3608	27746	27799	45716	45716					0.002906343490622021
LGTYLWTDV	9	Unmodified	_LGTYLWTDV_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2738647460938	2	534.274032	1066.53351	0.18205	9.7264E-05	-0.11936	-6.377E-05	0.062689	3.3493E-05	534.2738870612465	88.312	0.86971	88.285	87.776	88.646	-0.027657					60	20	4	0	0	0	0.17455	2	11111	11099;11111		94.006	8.6469	1	2250800			40289	3608	27746	27799	45717;45718	45718					0.002906343490622021
LGTYLWTDV	9	Unmodified	_LGTYLWTDV_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2732543945312	2	534.274032	1066.53351	0.12787	6.8318E-05	-0.12785	-6.8308E-05	1.7879E-05	9.5522E-09	534.273863395338	88.391	0.92344	88.409	87.832	88.755	0.018555					65	21	4	0	0	0	0.18915	1	11048	11048		90.777	0	1	2038900			40290	3608	27746	27799	45719	45719					0.002906343490622021
LGTYLWTDV	9	Unmodified	_LGTYLWTDV_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2734375	2	534.274032	1066.53351	-0.12828	-6.8538E-05	0.38207	0.00020413	0.25379	0.00013559	534.2740949011198	89.036	0.96481	89.052	88.753	89.717	0.015907					62	22	4	0	0	0	0.13494	1	11138	11138		102.77	11.997	1	2617000			40291	3608	27746	27799	45720	45720					0.002906343490622021
LGVAAAAALW	10	Unmodified	_LGVAAAAALW_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7821044921875	2	471.774003	941.533452	-0.71637	-0.00033796	-0.89439	-0.00042195	-1.6108	-0.00075991	471.77365279323146	29.243	0.42107	29.243	29.149	29.57	0					16	10	2	0	0	0	0.03519	1	1807	1807		26.796	0	1	632400			40292	1600	27747	27800	45721	45721					0.060346791397250854
LGVAGPQAR	9	Unmodified	_LGVAGPQAR_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF;nc|ENSG00000132837|Q9UI17-2|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7716979980469	2	434.753601	867.49265	-0.43615	-0.00018962	-1.7112	-0.00074395	-2.1473	-0.00093357	434.7528154593979	25.266	0.23329	25.266	25.052	25.285	0					8	5	2	0	0	0	0.024466	1	1175	1175		33.516	0	1	182560			40293	4656	27748	27801	45722	45722					0.053603378201387386
LGVGAELLVD	10	Unmodified	_LGVGAELLVD_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.31048583984375	2	493.281857	984.549162	0.38544	0.00019013	1.4889	0.00073445	1.8744	0.00092458	493.282108171392	61.433	0.76182	61.433	60.996	61.758	0					24	19	2	0	0	0	0.03519	1	7153	7153		21.96	0	1	270250			40294	988	27749	27802	45723	45723					0.05626920866143337
LGVGEIHLLG	10	Unmodified	_LGVGEIHLLG_					0	0	0		ENST00000573965.1_3_16:2933286-2946490:+|nuORF	ENST00000573965.1_3_16:2933286-2946490:+|nuORF	ENST00000573965.1_3_16:2933286-2946490:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2975769042969	2	504.297842	1006.58113	-0.054928	-2.77E-05	-0.88891	-0.00044827	-0.94383	-0.00047597	504.2972000121617	61.882	0.77148	61.655	61.415	62.187	-0.22663					79	20	5	0	0	0	1.0408	1	7183	7183		40.573	1.3198	1	14914000			40295	17078	27750	27803	45724	45724					0.07810333339944009
LGVGGEVKRSL	11	Unmodified	_LGVGGEVKRSL_					0	0	0		ENST00000310931.8_1_2:242255021-242255108:-|nuORF	ENST00000310931.8_1_2:242255021-242255108:-|nuORF	ENST00000310931.8_1_2:242255021-242255108:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.809326171875	2	557.83258	1113.65061	-0.049516	-2.7621E-05	2.4743	0.0013803	2.4248	0.0013526	557.8337117435924	52.506	1.6416	52.598	51.516	53.157	0.091938					103	43	3	0	0	0	0.024812	1	5482	5482		58.23	20.418	1	386610			40296	12073	27751	27804	45725	45725					0.09832792288693781
LGVGKRALI	9	Unmodified	_LGVGKRALI_					0	0	0			REV__ENSG00000166118|ENST00000299140|SPATA19	REV__ENSG00000166118|ENST00000299140|SPATA19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.81048583984375	2	463.810919	925.607286	-0.62752	-0.00029105	-0.4369	-0.00020264	-1.0644	-0.00049369	463.81057679092135	38.813	0.79469	38.813	38.597	39.391	0					56	21	4	0	0	0	0.64155	1	3280	3280		50.025	0	1	2769900	+		40297	25970	27752	27805	45726	45726					0.1415064730207405
LGVGTWSVSV	10	Unmodified	_LGVGTWSVSV_					0	0	0		ENST00000409185.5_1_2:131806791-131806905:-|nuORF	ENST00000409185.5_1_2:131806791-131806905:-|nuORF	ENST00000409185.5_1_2:131806791-131806905:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.3182373046875	2	502.7742	1003.53385	-0.42795	-0.00021516	0.21194	0.00010656	-0.21601	-0.00010861	502.77437527892846	52.436	0.86224	52.247	51.809	52.672	-0.18977					55	21	5	0	0	0	0.03519	1	5454	5454		74.255	0	1	2345700			40298	13764	27753	27806	45727	45727					0.03222054068953639
LGVHTKGADI	10	Unmodified	_LGVHTKGADI_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;PAPOLG|p.D348*|1|0.28|ENSG00000115421|chr2:60782699-60782700|AG/-|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7141418457031	2	505.785099	1009.55564	-0.90159	-0.00045601	0.42127	0.00021307	-0.48032	-0.00024294	505.78525837148334	29.399	0.34591	29.153	29.011	29.357	-0.24523					16	7	3	0	0	0	0.03519	1	1799	1799		32.812	0	1	110980			40299	10604;1922;3445	27754	27807	45728	45728					0.05124858817509903
LGVKVTDH	8	Unmodified	_LGVKVTDH_					0	0	0		ENST00000528393.1_1_11:79698696-79699011:+|nuORF	ENST00000528393.1_1_11:79698696-79699011:+|nuORF	ENST00000528393.1_1_11:79698696-79699011:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2187805175781	2	434.747985	867.481417	-0.53593	-0.00023299	2.1257	0.00092416	1.5898	0.00069117	434.7487245547299	29.638	0.84796	29.716	29.368	30.216	0.078344					47	20	3	0	0	0	0.027866	1	1854	1854		19.36	0	1	503450			40300	16180	27755	27808	45729	45729					0.0423751572599258
LGVKVTDH	8	Unmodified	_LGVKVTDH_					0	0	0		ENST00000528393.1_1_11:79698696-79699011:+|nuORF	ENST00000528393.1_1_11:79698696-79699011:+|nuORF	ENST00000528393.1_1_11:79698696-79699011:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.747985	867.481417	-0.98575	-0.00042855	2.4783	0.0010774	1.4925	0.00064888	434.7488520586048	29.976	0.8976	29.976	29.528	30.426	0	0.099958	0.00024847	NaN	26.796	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469490			40301	16180	27755	27808							0.0423751572599258
LGVKVTDH	8	Unmodified	_LGVKVTDH_					0	0	0		ENST00000528393.1_1_11:79698696-79699011:+|nuORF	ENST00000528393.1_1_11:79698696-79699011:+|nuORF	ENST00000528393.1_1_11:79698696-79699011:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	434.747985	867.481417	-0.41232	-0.00017926	1.9539	0.00084945	1.5416	0.00067019	434.7486635216954	29.928	0.85812	29.937	29.515	30.373	0.0086708	0.060317	-0.00020751	NaN	26.796	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449370			40302	16180	27755	27808							0.0423751572599258
LGVPPVRF	8	Unmodified	_LGVPPVRF_					0	0	0			REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.75677490234375	2	442.771263	883.527973	-0.18211	-8.0635E-05	-3.4922	-0.0015462	-3.6743	-0.0016269	442.76969961167896	21.643	0.38403	21.553	21.207	21.591	-0.090092					17	7	3	0	0	0	0.027866	1	635	635		20.482	12.792	1	85702	+		40303	33449	27756	27809	45730	45730					0.08155000347949226
LGVPPVRF	8	Unmodified	_LGVPPVRF_					0	0	0			REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.771263	883.527973	-0.60969	-0.00026995	-2.2377	-0.0009908	-2.8474	-0.0012608	442.7703208102861	21.603	0.38576	21.603	21.244	21.63	0	0.025279	0.00082162	NaN	13.775	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136640	+		40304	33449	27756	27809							0.08155000347949226
LGVQAWAS	8	Unmodified	_LGVQAWAS_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.2348937988281	2	416.221603	830.428653	0.16684	6.9442E-05	-4.0268	-0.0016761	-3.86	-0.0016066	416.2198707618763	23.628	0.71516	23.628	23.321	24.036	0					28	16	2	0	0	0	0.027866	1	961	961		30.504	0	1	697860			40305	8798	27757	27810	45731	45731					0.006655576631828808
LGVQVKDP	8	Unmodified	_LGVQVKDP_					0	0	0			REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.9346008300781	2	428.25036	854.486168	-0.69818	-0.000299	2.4383	0.0010442	1.7401	0.00074519	428.2524550365618	28.446	0.24075	28.201	28.081	28.322	-0.24524					8	5	2	0	0	0	0.027866	1	1650	1650		23.042	0	1	35349	+		40306	21199	27758	27811	45732	45732					0.053103998687561216
LGVSRDGRILA	11	Unmodified	_LGVSRDGRILA_					0	0	0		ENST00000543732.1_1_11:60692177-60692738:+|nuORF	ENST00000543732.1_1_11:60692177-60692738:+|nuORF	ENST00000543732.1_1_11:60692177-60692738:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.23193359375	2	578.843479	1155.67241	-1.1801	-0.00068307	1.2642	0.00073177	0.084145	4.8707E-05	578.844290933715	39.006	0.54232	39.03	38.807	39.349	0.023727					27	14	3	0	0	0	0.024762	1	3266	3266		31.53	8.0071	1	390030			40307	16471	27759	27812	45733	45733					0.10079597037292842
LGVWQGAL	8	Unmodified	_LGVWQGAL_					0	0	0			REV__ENST00000524751.5_1_11:126139211-126143243:+|nuORF	REV__ENST00000524751.5_1_11:126139211-126143243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7281494140625	2	422.239796	842.465038	-0.95752	-0.0004043	3.1877	0.001346	2.2302	0.00094169	422.2406057148998	25.316	0.56698	25.282	24.948	25.515	-0.034397					22	13	2	0	0	0	0.027866	1	1189	1189		37.028	0	1	123180	+		40308	34396	27760	27813	45734	45734					0.03750434559901805
LGVWQGAL	8	Unmodified	_LGVWQGAL_					0	0	0			REV__ENST00000524751.5_1_11:126139211-126143243:+|nuORF	REV__ENST00000524751.5_1_11:126139211-126143243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	421.7279052734375	2	422.239796	842.465038	0.44547	0.0001881	4.048	0.0017092	4.4935	0.0018973	422.24131880702475	25.174	0.41162	25.254	25.006	25.418	0.08009					17	9	2	0	0	0	0.027866	1	1100	1100		37.028	15.326	1	127330	+		40309	34396	27760	27813	45735	45735					0.03750434559901805
LGWALRGL	8	Unmodified	_LGWALRGL_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1;AP5B1|p.C829Lfs*32|1|0.48|ENSG00000254470|chr11:65778008-65778009|-/G|frameshift_variant;ENST00000316846.2_11:65545618-65547282:-|nuORF	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.266845703125	2	443.268887	884.523222	-0.35774	-0.00015857	-4.2575	-0.0018872	-4.6153	-0.0020458	443.26692516798755	29.65	1.3659	29.653	29.166	30.532	0.0031376					89	33	4	0	0	0	0.98906	1	1819	1819		39.021	9.18	1	3245000			40310	102	27761	27814	45736	45736					0.07634116205190367
LGWGKVLLV	9	Unmodified	_LGWGKVLLV_					0	0	0		ENSG00000183773|ENST00000440238|AIFM3;nc|ENSG00000183773|Q96NN9-3|AIFM3;nc|ENSG00000183773|Q96NN9-2|AIFM3	ENSG00000183773|ENST00000440238|AIFM3	ENSG00000183773|ENST00000440238|AIFM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7250671386719	2	492.81567	983.616788	0.44143	0.00021754	-0.35668	-0.00017578	0.084745	4.1764E-05	492.8133288596281	72.035	0.76763	72.045	71.802	72.57	0.0097733					38	19	3	0	0	0	0.024506	1	8658	8658		38.806	7.2273	1	254260			40311	9273	27762	27815	45737	45737					0.12432415587602463
LGWMHHTVD	9	Unmodified	_LGWMHHTVD_					0	0	0		KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;KDM6A|p.H996Nfs*5|1|0.74|ENSG00000147050|chrX:45079190-45079260|GAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATGAAAACTGGGATCCCACTGGAACAAA/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A	KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant	KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.310546875	2	548.255651	1094.49675	-0.15401	-8.4437E-05	-3.2482	-0.0017809	-3.4022	-0.0018653	548.25380489007	67.885	0.65028	67.885	67.528	68.179	0					26	16	2	0	0	0	0.024325	1	8108	8108		50.025	4.0726	1	267020			40312	5927	27763	27816	45738	45738					-0.04671940748448833
LGWMQGEPGP	10	Unmodified	_LGWMQGEPGP_					0	0	0			REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF	REV__ENST00000562955.2_2_1:43916973-43917366:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3317260742188	2	536.250034	1070.48552	-0.44465	-0.00023844	0.17041	9.1382E-05	-0.27424	-0.00014706	536.250110787378	46.77	0.50379	46.501	46.192	46.695	-0.26939					30	13	3	0	0	0	0.03519	1	4540	4540		34.173	9.6534	1	383000	+		40313	35211	27764	27817	45739	45739					-0.04690762842596996
LGWPCRDH	8	Unmodified	_LGWPCRDH_					0	0	0		ENST00000588421.1_1_19:6481689-6481728:-|nuORF	ENST00000588421.1_1_19:6481689-6481728:-|nuORF	ENST00000588421.1_1_19:6481689-6481728:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2666931152344	2	492.229436	982.44432	0.33081	0.00016284	-3.3995	-0.0016733	-3.0687	-0.0015105	492.2275775274731	37.468	0.29016	37.468	37.269	37.559	0					9	7	2	0	0	0	0.027866	1	3025	3025		38.806	0	1	155610			40314	17286	27765	27818	45740	45740					-0.04760479091419256
LGYDLAKYI	9	Unmodified	_LGYDLAKYI_					0	0	0			REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2738037109375	2	528.292225	1054.5699	0.4798	0.00025348	4.2319	0.0022357	4.7117	0.0024892	528.2941346232577	91.901	0.12717	91.91	91.832	91.959	0.0094147					4	2	2	0	0	0	0.023181	1	11572	11572		94.006	25.22	1	83252	+		40315	23433	27766	27819	45741	45741					0.044795112457904906
LGYFEDKLA	9	Unmodified	_LGYFEDKLA_					0	0	0			REV__ENSG00000180423|ENST00000326737|HARBI1	REV__ENSG00000180423|ENST00000326737|HARBI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2733764648438	2	528.274032	1054.53351	-0.65496	-0.000346	-0.44814	-0.00023674	-1.1031	-0.00058274	528.2738695912601	92.008	2.8556	91.999	91.326	94.181	-0.0082932					232	68	6	0	0	0	0.25032	1	11637	11637		82.305	0	1	52333000	+		40316	27340	27767	27820	45742	45742					0.008426343491009902
LGYHKDSSE	9	Unmodified	_LGYHKDSSE_					0	0	0		ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF;ENSG00000177888|ENST00000367405|ZBTB41	ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	ZBTB41|p.K238Nfs*4|1|0.16|ENSG00000177888|chr1:197199760-197199760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2975463867188	2	518.240721	1034.46689	-0.17358	-8.9956E-05	1.105	0.00057267	0.93145	0.00048272	518.2415141426161	102.68	0.30707	102.69	102.54	102.85	0.0054245					9	7	2	0	0	0	0.023817	1	13106	13106		82.305	11.009	1	204130			40317	8774	27768	27821	45743	45743					-0.04896601212817586
LGYPAVDKGK	10	Unmodified	_LGYPAVDKGK_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.296875	2	524.295299	1046.57605	-0.31499	-0.00016515	4.1351	0.002168	3.8202	0.0020029	524.2973676751948	100.38	1.3018	100.39	99.91	101.21	0.010117					96	32	5	0	0	0	0.57594	2	12821	12811;12821		79.713	0.26157	1	2834100			40318	4213	27769	27822	45744;45745	45745					0.05462029477325814
LGYPAVDKGK	10	Unmodified	_LGYPAVDKGK_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.297119140625	2	524.295299	1046.57605	0.31866	0.00016707	3.5404	0.0018562	3.8591	0.0020233	524.2970509151143	100.44	1.3456	100.44	100.01	101.36	-0.0050812					96	34	5	0	0	0	0.45367	2	12790	12783;12790		93.195	13.483	1	3281700			40319	4213	27769	27822	45746;45747	45747					0.05462029477325814
LGYPEEEEETE	11	Unmodified	_LGYPEEEEETE_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.4970703125	3	442.18575	1323.53542	-1.5456	-0.00068346	0.45561	0.00020147	-1.09	-0.000482	442.1857785092232	28.73	1.0714	28.485	28.202	29.273	-0.24524					34	24	2	0	0	0	0.024771	1	1801	1801		41.08	14.33	1	117910	+		40320	19695	27770	27823	45748	45748					-0.11340446214285294
LGYPEEEEETE	11	Unmodified	_LGYPEEEEETE_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	442.18575	1323.53542	-0.60997	-0.00026972	-0.38868	-0.00017187	-0.99865	-0.00044159	442.18539141651894	28.643	0.93948	28.474	28.089	29.029	-0.16897	-0.0056675	-0.00066205	NaN	41.08	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93521	+		40321	19695	27770	27823							-0.11340446214285294
LGYWIAAP	8	Unmodified	_LGYWIAAP_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.22503662109375	2	445.742171	889.469789	-0.58997	-0.00026298	-3.3028	-0.0014722	-3.8927	-0.0017352	445.740317409374	30.718	1.0545	30.539	30.124	31.178	-0.17818					57	25	3	0	0	0	0.027866	1	1936	1936		33.493	0	1	355080			40322	5731	27771	27824	45749	45749					0.02063318702653305
LHAAHLLSST	10	Unmodified	_LHAAHLLSST_					0	0	0		ENST00000521477.5_1_8:142166019-142175288:+|nuORF;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3	ENST00000521477.5_1_8:142166019-142175288:+|nuORF	ENST00000521477.5_1_8:142166019-142175288:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3032836914062	2	525.290548	1048.56654	-0.29185	-0.00015331	-2.1191	-0.0011132	-2.411	-0.0012665	525.2890689990357	42.747	0.15594	42.635	42.538	42.693	-0.11253					6	3	2	0	0	0	0.03519	1	3880	3880		30.504	3.7075	1	45314			40323	2660	27772	27825	45750	45750					0.044202611917853574
LHAALLLLEG	10	Unmodified	_LHAALLLLEG_					0	0	0		ENST00000378344.6_1_1:3545196-3545343:+|nuORF	ENST00000378344.6_1_1:3545196-3545343:+|nuORF	ENST00000378344.6_1_1:3545196-3545343:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2379150390625	2	525.321317	1048.62808	-1.0914	-0.00057334	1.019	0.00053531	-0.072386	-3.8026E-05	525.3212329688267	44.617	0.43247	44.515	44.315	44.747	-0.10154					17	10	2	0	0	0	0.03519	1	4147	4147		30.504	0	1	101610			40324	13237	27773	27826	45751	45751					0.1057119289109778
LHAALTVLLC	10	Carbamidomethyl (C)	_LHAALTVLLC(Carbamidomethyl (C))_	LHAALTVLLC(1)		LHAALTVLLC(46)		0	1	0			REV__ENSG00000206172|ENST00000320868|HBA1	REV__ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.8184814453125	2	555.820627	1109.6267	-0.79543	-0.00044211	-2.8014	-0.0015571	-3.5968	-0.0019992	555.8188526937889	60.652	0.60369	60.398	60.132	60.735	-0.25374					45	14	4	0	0	0	1.0004	1	6747	6747		45.952	6.6991	1	1171400	+		40325	28043	27774	27827	45752	45752	366				0.07627235530662801
LHAARAFR	8	Unmodified	_LHAARAFR_					0	0	0			REV__ENST00000292513.3_1_19:14584596-14585124:-|nuORF	REV__ENST00000292513.3_1_19:14584596-14585124:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3091735839844	2	471.275035	940.535518	-0.034706	-1.6356E-05	3.9669	0.0018695	3.9321	0.0018531	471.2771971838117	17.348	0.20126	17.141	17.014	17.216	-0.20669					5	3	2	0	0	0	0.027866	1	165	165		26.796	0	1	10194	+		40326	29951	27775	27828	45753	45753					0.06287152668221552
LHACLLVWLIK	11	Unmodified	_LHACLLVWLIK_					0	0	0			REV__ENST00000397898.7_1_21:46226554-46226644:-|nuORF	REV__ENST00000397898.7_1_21:46226554-46226644:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	436.9338684082031	3	436.933538	1307.77878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.726	1	20.53	20.03	21.03	-0.19577								0	0	0	1.5425	1	574	574		13.508	0	1		+		40327	31788	27776	27829	45754	45754					0.13720636278230813
LHAEAFAG	8	Unmodified	_LHAEAFAG_					0	0	0		chr16:18374881-18374953|147|12.03|0.0|20.2|-|0|None,PKD1P5|1	chr16:18374881-18374953|147|12.03|0.0|20.2|-|0|None,PKD1P5|1	chr16:18374881-18374953|147|12.03|0.0|20.2|-|0|None,PKD1P5|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	408.92218017578125	2	408.205953	814.397353	0.57196	0.00023348	-1.7829	-0.00072778	-1.2109	-0.00049431	408.20515881556366	103.54	0.23923	103.41	103.32	103.56	-0.12724					10	5	2	0	0	0	0.027866	1	12870	12870		28.254	15.295	1	25063			40328	350	27777	27830	45755	45755					-0.017270153709091574
LHAELVRDL	9	Unmodified	_LHAELVRDL_					0	0	0			REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.3065185546875	2	533.306198	1064.59784	-1.6045	-0.0008557	0.88861	0.0004739	-0.7159	-0.00038179	533.3065347264416	49.102	1.4264	49.177	48.877	50.303	0.074196					90	39	3	0	0	0	0.30449	1	4994	4994		75.043	2.1641	1	1972900	+		40329	28194	27778	27831	45756	45756					0.06812834225888764
LHAFLRLEKT	10	Unmodified	_LHAFLRLEKT_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.5428466796875	3	409.91179	1226.71354	-0.54847	-0.00022482	0.53735	0.00022027	-0.011114	-4.5558E-06	409.9118035785226	21.927	0.6271	21.725	21.421	22.048	-0.20198					23	12	3	0	0	0	0.03519	1	723	723		28.577	8.5463	1	51067			40330	2800	27779	27832	45757	45757					0.10925358076724478
LHAFRPKD	8	Unmodified	_LHAFRPKD_					0	0	0		ENST00000219476.7_1_16:2122324-2122908:+|nuORF	ENST00000219476.7_1_16:2122324-2122908:+|nuORF	ENST00000219476.7_1_16:2122324-2122908:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2735900878906	2	492.274701	982.534849	-1.8302	-0.00090097	0.92125	0.00045351	-0.90897	-0.00044747	492.2750669558031	38.3	0.88152	38.327	37.849	38.731	0.027275					59	24	4	0	0	0	0.61897	1	3128	3128		74.517	3.1387	1	9280700			40331	11172	27780	27833	45758	45758					0.04288313228516927
LHALRRHY	8	Unmodified	_LHALRRHY_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.3067016601562	2	533.306867	1064.59918	-0.54496	-0.00029063	-1.2768	-0.00068091	-1.8217	-0.00097154	533.3059711327785	49.177	0.83919	49.076	48.765	49.604	-0.1008					57	21	3	0	0	0	0.85409	1	4934	4934		54.765	3.572	1	1264700			40332	8343	27781	27834	45759	45759					0.06946513105299346
LHAQPHHLL	9	Unmodified	_LHAQPHHLL_					0	0	0		ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	ENSG00000187257|ENST00000334955|RSBN1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2999877929688	2	533.30125	1064.58795	-0.58823	-0.0003137	-1.554	-0.00082876	-2.1422	-0.0011425	533.3004691026439	61.078	1.3505	61.078	60.73	62.08	0					125	35	5	0	0	0	0.70186	1	7101	7101		45.952	0	1	34040000			40333	9618	27782	27835	45760	45760					0.05823691011187293
LHAYTSPAY	9	Unmodified	_LHAYTSPAY_					0	0	0			REV__nc|ENSG00000105699|Q86X29-6|LSR	REV__nc|ENSG00000105699|Q86X29-6|LSR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7559509277344	2	511.750724	1021.4869	-0.86211	-0.00044119	-0.61886	-0.0003167	-1.481	-0.00075789	511.7501997608623	34.811	0.22108	34.861	34.762	34.983	0.050255					6	5	2	0	0	0	0.024541	1	2558	2558		28.254	3.7503	1	35982	+		40334	21556	27783	27836	45761	45761					-0.022988054821894366
LHCFMVILD	9	Unmodified	_LHCFMVILD_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3169555664062	2	545.774831	1089.53511	-0.73297	-0.00040004	-1.0122	-0.00055243	-1.7452	-0.00095246	545.7738342794373	90.577	0.5474	90.56	90.317	90.865	-0.016716					20	12	2	0	0	0	0.024325	1	11449	11449		31.955	0	1	97832			40335	18157;37870	27784	27837	45762	45762					-0.006077711581610856
LHCGKVDN	8	Unmodified	_LHCGKVDN_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.24322509765625	2	443.215995	884.417436	-0.99827	-0.00044245	-2.2027	-0.00097627	-3.201	-0.0014187	443.21545075130535	38.266	0.13438	38.266	38.222	38.356	0					5	3	2	0	0	0	0.027866	1	3193	3193		30.504	0	1	90560	+		40336	20709	27785	27838	45763	45763					-0.029395877026104245
LHCGLNMF	8	Unmodified	_LHCGLNMF_					0	0	0		ENST00000359889.9_1_X:153734696-153735086:-|nuORF	ENST00000359889.9_1_X:153734696-153735086:-|nuORF	ENST00000359889.9_1_X:153734696-153735086:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.715087890625	2	467.717316	933.420079	-0.39254	-0.0001836	-4.0701	-0.0019037	-4.4627	-0.0020873	467.7154516135707	26.061	0.83649	26.061	25.779	26.615	0					45	19	4	0	0	0	0.78609	1	1286	1286		60.294	1.512	1	1461400			40337	12751	27786	27839	45764	45764					-0.049294555692995345
LHCGLNMF	8	Unmodified	_LHCGLNMF_					0	0	0		ENST00000359889.9_1_X:153734696-153735086:-|nuORF	ENST00000359889.9_1_X:153734696-153735086:-|nuORF	ENST00000359889.9_1_X:153734696-153735086:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.71527099609375	2	467.717316	933.420079	-0.26709	-0.00012492	-4.0923	-0.0019141	-4.3594	-0.002039	467.7153718464686	26.121	0.75053	26.098	25.777	26.527	-0.023088					44	17	4	0	0	0	0.96719	2	1282	1282;1295		42.474	5.3154	1	1483700			40338	12751	27786	27839	45765;45766	45765					-0.049294555692995345
LHCIEKRY	8	Unmodified	_LHCIEKRY_					0	0	0			REV__ENST00000495104.1_1_4:165841962-165842070:-|nuORF	REV__ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8060302734375	2	531.281669	1060.54878	-0.79067	-0.00042007	-1.9807	-0.0010523	-2.7714	-0.0014724	531.280580102739	20.996	0.91467	20.906	20.341	21.255	-0.090094					26	18	2	0	0	0	0.027866	1	543	543		39.021	5.5059	1	29706	+		40339	33792	27787	27840	45767	45767					0.02093222665303074
LHCLSFEQI	9	Unmodified	_LHCLSFEQI_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;nc|ENSG00000162777|Q9H6A0-2|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.2750244140625	2	545.273509	1088.53247	-0.48422	-0.00026403	1.8757	0.0010227	1.3914	0.00075871	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.33245	1	9566	9566		71.296	1.6681	1	63206000			40340	6991	27788	27841	45768	45768					-0.008259032914565978
LHCLSFEQI	9	Unmodified	_LHCLSFEQI_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;nc|ENSG00000162777|Q9H6A0-2|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.2752075195312	2	545.273509	1088.53247	-0.30268	-0.00016504	1.6612	0.00090583	1.3586	0.00074079	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.25032	1	9549	9549		82.305	16.502	1	57394000			40341	6991	27788	27841	45769	45769					-0.008259032914565978
LHCSILRAKGL	11	Unmodified	_LHCSILRAKGL_					0	0	0		ENSG00000149927|ENST00000350119|DOC2A;ENST00000564233.5_1_16:30020315-30023028:-|nuORF	ENSG00000149927|ENST00000350119|DOC2A	ENSG00000149927|ENST00000350119|DOC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.8552856445312	2	605.858075	1209.7016	-1.5178	-0.00091959	-2.2678	-0.0013739	-3.7856	-0.0022935	605.8566229471011	82.009	1.0012	82.035	81.7	82.701	0.025711					67	23	4	0	0	0	0.51994	2	10141	10141;10151		75.043	15.113	1	2440500			40342	6125	27789	27842	45770;45771	45770					0.10513418061918856
LHCSILRAKGL	11	Unmodified	_LHCSILRAKGL_					0	0	0		ENSG00000149927|ENST00000350119|DOC2A;ENST00000564233.5_1_16:30020315-30023028:-|nuORF	ENSG00000149927|ENST00000350119|DOC2A	ENSG00000149927|ENST00000350119|DOC2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.85595703125	2	605.858075	1209.7016	-0.21421	-0.00012978	-3.7516	-0.0022729	-3.9658	-0.0024027	605.8556684179202	82.138	1.2043	81.955	81.559	82.763	-0.18237					89	27	5	0	0	0	0.67171	1	9883	9883		65.465	9.0316	1	2719900			40343	6125	27789	27842	45772	45772					0.10513418061918856
LHCSILRAKGL	11	Unmodified	_LHCSILRAKGL_					0	0	0		ENSG00000149927|ENST00000350119|DOC2A;ENST00000564233.5_1_16:30020315-30023028:-|nuORF	ENSG00000149927|ENST00000350119|DOC2A	ENSG00000149927|ENST00000350119|DOC2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8556518554688	2	605.858075	1209.7016	-0.9948	-0.00060271	-2.9756	-0.0018028	-3.9704	-0.0024055	605.8561374564249	82.054	1.4639	81.914	81.572	83.036	-0.14014					87	33	4	0	0	0	0.79111	1	9877	9877		58.23	1.7961	1	2530200			40344	6125	27789	27842	45773	45773					0.10513418061918856
LHDEKEGIY	9	Unmodified	_LHDEKEGIY_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.2716064453125	2	552.272021	1102.52949	0.42131	0.00023268	2.6164	0.001445	3.0377	0.0016776	552.2712713323086	50.872	0.91348	50.76	50.488	51.401	-0.11163					112	23	7	0	0	0	0.17822	2	5186	5186;5214		93.195	10.98	1	6324200			40345	6338	27790	27843	45774;45775	45774					-0.0176745514461345
LHDEKEGIY	9	Unmodified	_LHDEKEGIY_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.271484375	2	552.272021	1102.52949	0.18695	0.00010325	1.6954	0.00093634	1.8824	0.0010396	552.2712799286783	51.129	1.0605	50.853	50.552	51.613	-0.27643					96	27	7	0	0	0	0.20967	1	5214	5214		87.754	2.8388	1	4750300			40346	6338	27790	27843	45776	45776					-0.0176745514461345
LHDEKEGIY	9	Unmodified	_LHDEKEGIY_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.2715454101562	2	552.272021	1102.52949	0.52436	0.00028959	1.5695	0.0008668	2.0939	0.0011564	552.2710677733749	50.945	0.87764	50.764	50.462	51.34	-0.18071					94	22	7	0	0	0	0.17822	2	5191	5191;5200		93.195	16.421	1	4482600			40347	6338	27790	27843	45777;45778	45777					-0.0176745514461345
LHDLKRAM	8	Unmodified	_LHDLKRAM_					0	0	0			REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	REV__nc|ENSG00000035664|Q9UIK4-2|DAPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.274169921875	2	492.276386	982.53822	-0.97648	-0.0004807	-3.9746	-0.0019566	-4.9511	-0.0024373	492.27432714502453	38.048	0.93858	37.966	37.706	38.645	-0.082516					79	25	4	0	0	0	0.65272	1	3146	3146		71.378	0	1	8474200	+		40348	36445	27791	27844	45779	45779					0.04625240010864218
LHDLVTVPVT	10	Unmodified	_LHDLVTVPVT_					0	0	0		ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2796020507812	2	547.316232	1092.61791	-0.20112	-0.00011008	-1.8597	-0.0010178	-2.0608	-0.0011279	547.3150828783813	59.091	0.69004	58.903	58.779	59.469	-0.18795					19	16	2	0	0	0	0.03519	1	6517	6517		49.442	15.269	1	121190			40349	7187	27792	27845	45780	45780					0.0753058516584133
LHDPETLL	8	Unmodified	_LHDPETLL_					0	0	0		ENST00000546226.5_1_11:118963098-118963308:+|nuORF;ENST00000543543.5_1_11:118963098-118963990:+|nuORF;ENST00000542044.5_1_11:118959775-118963990:+|nuORF;nc|ENSG00000256269|P08397-2|HMBS;ENSG00000256269|ENST00000652429|HMBS	ENST00000546226.5_1_11:118963098-118963308:+|nuORF	ENST00000546226.5_1_11:118963098-118963308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.25335693359375	2	469.2531	936.491647	0.78166	0.0003668	-0.67633	-0.00031737	0.10533	4.9427E-05	469.2526722336673	76.895	0.7887	76.909	76.572	77.361	0.013504					30	18	2	0	0	0	1.0017	1	9415	9415		37.028	0	1	871270			40350	10906	27793	27846	45781	45781					0.0208607866057946
LHDSKGQTK	9	Unmodified	_LHDSKGQTK_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.33148193359375	2	507.272355	1012.53016	-0.78482	-0.00039812	0.49222	0.00024969	-0.29259	-0.00014842	507.27239959974537	37.543	0.63378	37.48	37.268	37.902	-0.063389					30	17	3	0	0	0	0.02435	1	3049	3049		51.335	5.3835	1	342880			40351	5408	27794	27847	45782	45782					0.024393842951099032
LHDSKGQTK	9	Unmodified	_LHDSKGQTK_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.272355	1012.53016	-1.113	-0.00056458	-5.2419	-0.0026591	-6.3549	-0.0032236	507.27003619020076	37.686	0.38013	37.466	37.271	37.651	-0.2195	-0.11651	-0.0056582	NaN	51.335	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92803			40352	5408	27794	27847							0.024393842951099032
LHDYVFAQHS	10	Unmodified	_LHDYVFAQHS_					0	0	0			REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	608.83251953125	2	608.790912	1215.56727	-0.62522	-0.00038063	-1.1556	-0.00070349	-1.7808	-0.0010841	608.7914404490375	81.646	0.20956	81.417	81.312	81.522	-0.2289					5	4	2	0	0	0	0.03519	1	9796	9796		42.396	15.703	1	52921	+		40353	22094	27795	27848	45783	45783					-0.03188944159160201
LHEAAWLPS	9	Unmodified	_LHEAAWLPS_					0	0	0			REV__ENSG00000198894|ENST00000361786|CIPC	REV__ENSG00000198894|ENST00000361786|CIPC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7843933105469	2	512.266542	1022.51853	0.78463	0.00040194	-0.3927	-0.00020117	0.39193	0.00020077	512.2661471922213	59.435	0.37495	59.435	59.145	59.52	0					19	9	3	0	0	0	0.024294	1	6746	6746		45.952	0	1	278500	+		40354	28511	27796	27849	45784	45784					0.00817187271752573
LHEATVRLM	9	Oxidation (M)	_LHEATVRLM(Oxidation (M))_		LHEATVRLM(1)		LHEATVRLM(72)	0	0	1		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2940063476562	2	543.292233	1084.56991	-0.36512	-0.00019837	3.8583	0.0020962	3.4932	0.0018978	543.2943785036323	72.538	0.71785	72.261	71.908	72.626	-0.2769					26	16	2	0	0	0	0.32811	1	8498	8498		71.877	15.156	1	2316300			40355	10245	27797	27850	45785	45785		433			0.031011879741527082
LHEATVRLM	9	Oxidation (M)	_LHEATVRLM(Oxidation (M))_		LHEATVRLM(1)		LHEATVRLM(82)	0	0	1		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2938232421875	2	543.292233	1084.56991	-0.042985	-2.3354E-05	3.4397	0.0018688	3.3967	0.0018454	543.2941360986251	72.586	0.59575	72.321	72.042	72.638	-0.26479					25	13	2	0	0	0	0.2508	2	8513	8513;8540		82.241	10.363	1	2194400			40356	10245	27797	27850	45786;45787	45786		433			0.031011879741527082
LHECDEPPA	9	Unmodified	_LHECDEPPA_					0	0	0			REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2	REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7142333984375	2	505.716024	1009.4175	-0.33266	-0.00016823	-3.3058	-0.0016718	-3.6384	-0.00184	505.71433724954466	31.485	3.9418	31.3	29.477	33.419	-0.18503					250	95	4	0	0	0	0.75282	1	2089	2089		42.474	0.078325	1	1825100	+		40357	28372	27798	27851	45788	45788					-0.08683632493261939
LHECDEPPA	9	Unmodified	_LHECDEPPA_					0	0	0			REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2	REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7140197753906	2	505.716024	1009.4175	-0.54029	-0.00027323	-3.3178	-0.0016779	-3.8581	-0.0019511	505.7144135483818	29.07	1.2607	28.92	28.324	29.584	-0.14952					87	29	5	0	0	0	0.96855	1	1711	1711		26.796	0.10319	1	1678400	+		40358	28372	27798	27851	45789	45789					-0.08683632493261939
LHEFPEPLE	9	Unmodified	_LHEFPEPLE_					0	0	0			REV__nc|ENSG00000006128|P20366-4|TAC1	REV__nc|ENSG00000006128|P20366-4|TAC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.7811279296875	2	555.776939	1109.53933	0.43909	0.00024404	0.03044	1.6918E-05	0.46953	0.00026095	555.7767906467403	58.413	0.80898	58.504	58.188	58.997	0.091217					43	21	3	0	0	0	0.43973	1	6558	6558		63.306	0	1	1272800	+		40359	19825	27799	27852	45790	45790					-0.01106267139243755
LHEREVFLQ	9	Unmodified	_LHEREVFLQ_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.8184814453125	2	585.81693	1169.61931	-0.21429	-0.00012554	2.7157	0.0015909	2.5014	0.0014653	585.818468831878	18.987	2.9929	18.784	18.51	21.503	-0.20371					127	60	4	0	0	0	0.6238	1	396	396		51.193	0	1	1770400	+		40360	21420	27800	27853	45791	45791					0.04128219254630494
LHESWKYNMFF	11	Unmodified	_LHESWKYNMFF_					0	0	0		TTN|p.S7658F|1|0.44|ENSG00000155657|chr2:178719568-178719568|G/A|missense_variant	TTN|p.S7658F|1|0.44|ENSG00000155657|chr2:178719568-178719568|G/A|missense_variant	TTN|p.S7658F|1|0.44|ENSG00000155657|chr2:178719568-178719568|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3031921386719	3	501.235945	1500.68601	1.383	0.00069323	1.7648	0.00088458	3.1478	0.0015778	501.23695249466545	24.854	0.3941	24.683	24.471	24.865	-0.17151					24	8	4	0	0	0	0.024759	1	1097	1097		23.378	0	1	134680			40361	38118	27801	27854	45792	45792					-0.044309132458010936
LHEVQFTAR	9	Unmodified	_LHEVQFTAR_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9|MGA	REV__nc|ENSG00000174197|Q8IWI9|MGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2820434570312	2	550.795998	1099.57744	-0.14125	-7.7802E-05	-0.66103	-0.00036409	-0.80228	-0.00044189	550.7958993474111	61.933	0.55458	61.675	61.464	62.018	-0.25725					18	13	2	0	0	0	0.024205	1	6959	6959		35.618	7.736	1	1157100	+		40362	26841	27802	27855	45793	45793					0.03163663566078867
LHFIEDMY	8	Unmodified	_LHFIEDMY_					0	0	0			REV__ENSG00000175548|ENST00000308742|ALG10B	REV__ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2470703125	2	534.24696	1066.47937	-1.2863	-0.00068718	0.68064	0.00036363	-0.60563	-0.00032356	534.2472394993654	34.41	1.4497	34.46	34.173	35.623	0.050255					94	37	5	0	0	0	0.78609	1	2507	2507		60.294	0.17569	1	6557600	+		40363	26959	27803	27856	45794	45794					-0.05121281074093531
LHFNKRRD	8	Unmodified	_LHFNKRRD_					0	0	0			REV__DTD1-RALGAPA2|1|fusion	REV__DTD1-RALGAPA2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.8349609375	2	543.301781	1084.58901	0.25608	0.00013913	-2.1717	-0.0011799	-1.9156	-0.0010408	543.8011719563366	70.763	0.17356	70.47	70.368	70.542	-0.29291					6	3	2	0	0	0	0.027866	1	8516	8516		12.959	0	1	130140	+		40364	19715	27804	27857	45795	45795					0.050099053800977345
LHGEEPDEV	9	Unmodified	_LHGEEPDEV_					0	0	0			REV__ENST00000482812.1_1_7:151722955-151800300:+|nuORF	REV__ENST00000482812.1_1_7:151722955-151800300:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.73388671875	2	512.732729	1023.4509	0.31677	0.00016242	0.86539	0.00044371	1.1822	0.00060613	512.7332377598119	59.166	1.0475	58.985	58.426	59.473	-0.18134					63	25	4	0	0	0	0.55828	1	6524	6524		55.504	2.5675	1	2743600	+		40365	27178	27805	27858	45796	45796					-0.05988307449695185
LHGEPPSAF	9	Unmodified	_LHGEPPSAF_					0	0	0		nc|ENSG00000124508|Q8WVV5-3|BTN2A2	nc|ENSG00000124508|Q8WVV5-3|BTN2A2	nc|ENSG00000124508|Q8WVV5-3|BTN2A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7779541015625	2	477.737617	953.460681	-0.64492	-0.0003081	-3.0762	-0.0014696	-3.7211	-0.0017777	477.73605275020697	26.738	0.52078	26.819	26.543	27.064	0.081293					30	12	3	0	0	0	0.024412	1	1379	1379		31.955	1.6371	1	616470			40366	18241	27806	27859	45797	45797					-0.017910746536699662
LHGPDWNI	8	Unmodified	_LHGPDWNI_					0	0	0			REV__ENST00000410016.5_1_2:177025711-177033850:+|nuORF	REV__ENST00000410016.5_1_2:177025711-177033850:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2540283203125	2	476.237784	950.461016	0.019391	9.2349E-06	-1.4132	-0.00067303	-1.3938	-0.00066379	476.2374851913524	27.082	0.45987	27.069	26.745	27.205	-0.012983					19	11	2	0	0	0	0.027866	1	1390	1390		57.811	0	1	129550	+		40367	31979	27807	27860	45798	45798					-0.01619654933813308
LHGPRLRR	8	Unmodified	_LHGPRLRR_					0	0	0			REV__ENST00000283921.4_1_7:27211779-27213458:-|nuORF	REV__ENST00000283921.4_1_7:27211779-27213458:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.8132629394531	2	502.814859	1003.61517	0.69855	0.00035124	-3.0083	-0.0015126	-2.3097	-0.0011614	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	1.0239	1	11956	11956		33.516	3.674	1	14776000	+		40368	29906	27808	27861	45799	45799					0.11350219342227774
LHGQPLLALS	10	Unmodified	_LHGQPLLALS_					0	0	0			REV__ENST00000356892.3_1_X:128927898-128928024:+|nuORF	REV__ENST00000356892.3_1_X:128927898-128928024:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2684326171875	2	524.811116	1047.60768	-0.90174	-0.00047324	-0.50776	-0.00026648	-1.4095	-0.00073972	524.8108905508827	44.026	0.58323	43.807	43.49	44.073	-0.21939					24	15	2	0	0	0	0.03519	1	4026	4026		29.15	4.9468	1	251550	+		40369	30805	27809	27862	45800	45800					0.08578022231267823
LHGSLRSVPN	10	Unmodified	_LHGSLRSVPN_					0	0	0		ENST00000427391.1_1_X:130917988-130930157:-|nuORF	ENST00000427391.1_1_X:130917988-130930157:-|nuORF	ENST00000427391.1_1_X:130917988-130930157:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7890625	2	540.301447	1078.58834	0.73461	0.00039691	1.3396	0.00072379	2.0742	0.0011207	540.3019978194077	59.677	0.4747	59.48	59.214	59.689	-0.19742					21	11	3	0	0	0	0.03519	1	6565	6565		24.519	2.8169	1	634290			40370	14107	27810	27863	45801	45801					0.05219065940377732
LHHAPAPL	8	Unmodified	_LHHAPAPL_					0	0	0		ENST00000431558.1_1_3:9989091-9989208:+|nuORF	ENST00000431558.1_1_3:9989091-9989208:+|nuORF	ENST00000431558.1_1_3:9989091-9989208:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2618408203125	2	428.245412	854.476272	0.60781	0.00026029	4.2542	0.0018218	4.862	0.0020821	428.2478955283121	90.193	0.74338	90.055	89.792	90.535	-0.13824					26	17	3	0	0	0	0.027866	1	11064	11064		16.705	2.0409	1	374840			40371	14187	27811	27864	45802	45802					0.043212566540205444
LHHCSSSMDVT	11	Carbamidomethyl (C)	_LHHC(Carbamidomethyl (C))SSSMDVT_	LHHC(1)SSSMDVT		LHHC(41)SSSMDVT		0	1	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.1819763183594	3	425.181512	1272.52271	-0.059741	-2.5401E-05	-0.67974	-0.00028901	-0.73948	-0.00031441	425.1818756525927	34.648	1.5417	34.441	34.082	35.623	-0.20696					149	38	7	0	0	0	0.98082	1	2577	2577		41.08	10.511	1	51056000			40372	664	27812	27865	45803	45803	10				-0.10265459359152374
LHHDGRIVF	9	Unmodified	_LHHDGRIVF_					0	0	0		ENST00000461225.5_1_17:37235749-37309234:-|nuORF;ENST00000578517.5_1_17:37235696-37309234:-|nuORF;ENST00000444435.1_1_17:37253194-37263698:-|nuORF;nc|ENSG00000161381|Q8IUK5-3|PLXDC1;ENST00000493200.5_1_17:37235696-37288242:-|nuORF;nc|ENSG00000161381|Q8IUK5-2|PLXDC1;ENST00000394318.7_1_17:37235696-37307690:-|nuORF;nc|ENSG00000161381|Q8IUK5-4|PLXDC1;ENSG00000161381|ENST00000315392|PLXDC1	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.8402709960938	2	547.298707	1092.58286	0.79539	0.00043532	4.3089	0.0023583	5.1043	0.0027936	547.3008685261359	99.336	0.58625	99.211	98.952	99.539	-0.12458					26	15	2	0	0	0	0.024412	1	12355	12355		31.955	0	1	66567			40373	14679	27813	27866	45804	45804					0.04027387148562411
LHHDKLVPF	9	Unmodified	_LHHDKLVPF_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7827758789062	2	553.311284	1104.60801	-0.39737	-0.00021987	-3.0075	-0.0016641	-3.4048	-0.0018839	553.3095268613861	41.843	0.45789	41.611	41.311	41.769	-0.23186					16	11	2	0	0	0	0.024506	1	3672	3672		30.504	8.5438	1	255730			40374	6498	27814	27867	45805	45805					0.05989441951146546
LHHEVKRLNE	10	Unmodified	_LHHEVKRLNE_					0	0	0		nc|ENSG00000177548|Q9H5N1-2|RABEP2;ENSG00000177548|ENST00000358201|RABEP2	nc|ENSG00000177548|Q9H5N1-2|RABEP2	nc|ENSG00000177548|Q9H5N1-2|RABEP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	637.2685546875	2	637.851835	1273.68912	-0.43589	-0.00027804	4.1541	0.0026497	3.7182	0.0023717	637.8542854663698	34.484	0.32592	34.277	34.12	34.446	-0.20695					11	7	2	0	0	0	0.03519	1	2559	2559		31.53	0	1	53438			40375	8751	27815	27868	45806	45806					0.06322097923248293
LHHHIHTG	8	Unmodified	_LHHHIHTG_					0	0	0		ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7822570800781	2	476.249018	950.483482	0.064833	3.0877E-05	-0.63067	-0.00030036	-0.56584	-0.00026948	476.2485978978084	40.002	1.4164	39.89	39.5	40.917	-0.11223					76	38	3	0	0	0	0.027866	1	3627	3627		49.211	32.738	1	462380			40376	10104	27816	27869	45807	45807					0.006259892544562717
LHHPSLISLL	10	Unmodified	_LHHPSLISLL_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2371215820312	2	565.340041	1128.66553	-0.1256	-7.1009E-05	-0.49018	-0.00027712	-0.61578	-0.00034813	565.3394849025563	46.446	0.49302	46.185	45.968	46.461	-0.26118					28	12	3	0	0	0	0.03519	1	4434	4434		23.042	0	1	395840			40377	9764	27817	27870	45808	45808					0.10634284156708418
LHHVSLRR	8	Unmodified	_LHHVSLRR_					0	0	0			REV__ENSG00000006283|ENST00000359106|CACNA1G	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3050842285156	2	509.306867	1016.59918	0.37955	0.00019331	-2.3699	-0.001207	-1.9903	-0.0010137	509.3055250394513	22.117	0.70887	21.928	21.482	22.191	-0.18894					25	10	3	0	0	0	0.99042	1	770	770		38.806	0	1	507160	+		40378	19828	27818	27871	45809	45809					0.09154513105329443
LHIGNVQPL	9	Unmodified	_LHIGNVQPL_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7662048339844	2	495.790184	989.565815	0.16124	7.9942E-05	-1.8632	-0.00092374	-1.7019	-0.0008438	495.7893939703706	78.356	0.99313	78.356	78.042	79.035	0					42	23	3	0	0	0	0.024541	1	9762	9762		24.203	0	1	228730	+		40379	22056	27819	27872	45810	45810					0.0706146654274562
LHIGNVQPL	9	Unmodified	_LHIGNVQPL_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.790184	989.565815	0.47983	0.0002379	-2.2526	-0.0011168	-1.7728	-0.00087894	495.789208965887	78.5	0.91039	78.308	78.056	78.966	-0.1921	-0.043246	-0.0004889	NaN	38.806	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360160	+		40380	22056	27819	27872							0.0706146654274562
LHIGNVQPL	9	Unmodified	_LHIGNVQPL_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.790184	989.565815	-0.18648	-9.2456E-05	-1.389	-0.00068863	-1.5754	-0.00078109	495.7895155398265	78.374	1.0745	78.39	78.073	79.148	0.015915	0.038503	0.0003675	NaN	38.806	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337210	+		40381	22056	27819	27872							0.0706146654274562
LHIKKKQRFVE	11	Unmodified	_LHIKKKQRFVE_					0	0	0			REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.31610107421875	3	475.961144	1424.8616	0.30133	0.00014342	-0.30242	-0.00014394	-0.0010867	-5.1723E-07	475.9609958718451	66.385	1.0954	66.104	65.117	66.213	-0.28149					48	29	3	0	0	0	0.024865	1	7881	7881		12.433	6.112	1	185640	+		40382	19850	27820	27873	45811	45811					0.1661666933057404
LHIKKKQRFVE	11	Unmodified	_LHIKKKQRFVE_					0	0	0			REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	REV__nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.3069152832031	3	475.961144	1424.8616	0.21876	0.00010412	-0.21401	-0.00010186	0.0047491	2.2604E-06	475.96092592592953	63.687	1.0094	63.459	63.095	64.104	-0.22773					64	25	4	0	0	0	0.02484	1	7295	7295		22.562	16.863	1	2432100	+		40383	19850	27820	27873	45812	45812					0.1661666933057404
LHILPFDSV	9	Unmodified	_LHILPFDSV_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7794189453125	2	520.792392	1039.57023	-0.22138	-0.00011529	-2.2093	-0.0011506	-2.4306	-0.0012659	520.7913513475031	63.263	0.12137	63.042	62.98	63.102	-0.22097					4	2	2	0	0	0	0.024535	1	7135	7135		25.45	0	1	75834			40384	5800	27821	27874	45813	45813					0.05202930965674568
LHIPTRDLP	9	Unmodified	_LHIPTRDLP_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.2738037109375	2	531.308741	1060.60293	-1.158	-0.00061525	-0.83087	-0.00044145	-1.9889	-0.0010567	531.8088071239043	50.15	0.39206	50.15	49.949	50.341	0					14	11	2	0	0	0	0.024541	1	5194	5194		30.504	17.692	1	154800			40385	3450	27822	27875	45814	45814					0.07505138088527019
LHIVRLDVSR	10	Unmodified	_LHIVRLDVSR_					0	0	0			REV__nc|ENSG00000214198|Q6P2S7|TTC41P	REV__nc|ENSG00000214198|Q6P2S7|TTC41P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.3663330078125	2	604.367121	1206.71969	-0.44133	-0.00026673	-0.063761	-3.8535E-05	-0.5051	-0.00030526	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.1125	1	13270	13270		12.207	4.4022	1	5077600	+		40386	37130	27823	27876	45815	45815					0.12459876308253115
LHKAMRDL	8	Unmodified	_LHKAMRDL_					0	0	0			REV__ENSG00000056277|ENST00000370978|ZNF280C	REV__ENSG00000056277|ENST00000370978|ZNF280C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2744140625	2	492.276386	982.53822	-1.0619	-0.00052273	-3.9127	-0.0019262	-4.9746	-0.0024489	492.27435575245823	38.128	0.81085	38.128	37.869	38.68	0					44	22	4	0	0	0	0.68164	1	3167	3167		68.787	2.9837	1	9807400	+		40387	20212	27824	27877	45816	45816					0.04625240010864218
LHKAMRDL	8	Unmodified	_LHKAMRDL_					0	0	0			REV__ENSG00000056277|ENST00000370978|ZNF280C	REV__ENSG00000056277|ENST00000370978|ZNF280C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.27435302734375	2	492.276386	982.53822	-1.8302	-0.00090097	-2.5025	-0.0012319	-4.3327	-0.0021329	492.2750669558031	38.3	0.88152	38.327	37.849	38.731	0.027275					59	24	4	0	0	0	0.6248	1	3156	3156		73.975	0	1	9280700	+		40388	20212	27824	27877	45817	45817					0.04625240010864218
LHKDAENR	8	Unmodified	_LHKDAENR_					0	0	0		ENST00000582147.1_1_18:334691-500598:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:334691-500598:-|nuORF	ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.7567138671875	2	491.756872	981.499192	-0.27377	-0.00013463	0.22681	0.00011154	-0.046951	-2.3088E-05	491.7568390573199	23.881	0.82284	23.666	23.266	24.089	-0.21483					51	18	5	0	0	0	0.93274	1	995	995		47.916	3.7988	1	1321000			40389	6657	27825	27878	45818	45818					0.007702309808450991
LHKKTKKPI	9	Unmodified	_LHKKTKKPI_					0	0	0			REV__nc|ENSG00000130396|P55196-3|AFDN	REV__nc|ENSG00000130396|P55196-3|AFDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.8403930664062	2	546.866226	1091.7179	0.39818	0.00021775	4.1125	0.002249	4.5107	0.0024667	546.8684292000441	99.706	0.34007	99.571	99.379	99.719	-0.13526					9	7	2	0	0	0	0.024506	1	12376	12376		30.504	18.993	1	45810	+		40390	23111	27826	27879	45819	45819					0.1757086729032835
LHKLNVNLP	9	Unmodified	_LHKLNVNLP_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.6167602539062	2	524.319109	1046.62366	-0.13732	-7.2E-05	2.9034	0.0015223	2.7661	0.0014503	524.3207115473894	17.827	0.29955	17.621	17.464	17.764	-0.20669					14	5	4	0	0	0	0.024541	1	222	222		24.203	10.427	1	41479			40391	12537	27827	27880	45820	45820					0.10221728468172842
LHKLNVNLP	9	Unmodified	_LHKLNVNLP_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.319109	1046.62366	0.8973	0.00047047	2.1309	0.0011173	3.0282	0.0015878	524.3201112174667	17.797	0.29951	17.643	17.507	17.807	-0.15403	0.012123	0.00093238	NaN	24.203	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51268			40392	12537	27827	27880							0.10221728468172842
LHKLTVNDVP	10	Unmodified	_LHKLTVNDVP_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.283447265625	2	568.327131	1134.63971	0.50268	0.00028569	1.5876	0.00090226	2.0902	0.0011879	568.327928947441	82.108	0.94142	81.879	81.353	82.295	-0.2289					41	21	3	0	0	0	0.03519	1	9836	9836		47.657	10.498	1	263480	+		40393	23653	27828	27881	45821	45821					0.07777389914417654
LHKPAGHL	8	Unmodified	_LHKPAGHL_					0	0	0		ENST00000429751.6_1_16:15159093-15159129:-|nuORF	ENST00000429751.6_1_16:15159093-15159129:-|nuORF	ENST00000429751.6_1_16:15159093-15159129:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7747802734375	2	436.758687	871.502821	0.68033	0.00029714	2.9609	0.0012932	3.6412	0.0015903	436.75972150525524	90.195	0.57267	90.057	89.792	90.365	-0.13824					16	13	2	0	0	0	0.027866	1	11022	11022		37.028	22.364	1	130540			40394	14155	27829	27882	45822	45822					0.061929455453764604
LHKQIVPE	8	Unmodified	_LHKQIVPE_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.8055419921875	2	482.284734	962.554916	0.078319	3.7772E-05	0.50411	0.00024313	0.58243	0.0002809	482.2846190747522	53.345	0.6059	53.345	53.049	53.655	0					28	16	2	0	0	0	0.027866	1	5801	5801		44.117	8.9161	1	359370			40395	9513	27830	27883	45823	45823					0.07214064168476853
LHKRDNDK	8	Unmodified	_LHKRDNDK_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2-YLPM1|1|fusion	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2987670898438	2	513.277972	1024.54139	0.24466	0.00012558	-4.2288	-0.0021706	-3.9842	-0.002045	513.2759515146552	22.896	0.46562	22.699	22.365	22.831	-0.1975					16	9	2	0	0	0	0.027866	1	870	870		37.159	11.709	1	30550			40396	9892	27831	27884	45824	45824					0.030102063892172737
LHKRLQYSRW	10	Unmodified	_LHKRLQYSRW_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.2751770019531	3	462.929955	1385.76804	-1.3782	-0.00063801	3.4307	0.0015882	2.0525	0.00095015	462.93066321326484	21.34	0.34433	21.127	20.872	21.216	-0.2128					11	6	2	0	0	0	0.03519	1	600	600		21.686	6.9921	1	15703	+		40397	22460	27832	27885	45825	45825					0.09058369948138534
LHKRRLYQRR	10	Unmodified	_LHKRRLYQRR_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.96148681640625	3	475.960249	1424.85892	1.8091	0.00086108	0.065668	3.1255E-05	1.8748	0.00089233	475.9602062919514	63.537	1.4911	63.592	63.233	64.724	0.054104					116	40	5	0	0	0	1.109	1	7356	7356		15.333	1.8252	1	5895500	+		40398	20056	27833	27886	45826	45826					0.1634825871628891
LHLAAQKEA	9	Unmodified	_LHLAAQKEA_					0	0	0		ENST00000496467.5_1_9:102861593-102977700:+|nuORF	ENST00000496467.5_1_9:102861593-102977700:+|nuORF	ENST00000496467.5_1_9:102861593-102977700:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7804260253906	2	490.779816	979.545079	-0.21935	-0.00010765	-0.086687	-4.2544E-05	-0.30603	-0.0001502	490.779660584794	26.912	1.1709	26.744	26.188	27.359	-0.16816					73	27	4	0	0	0	0.43973	1	1416	1416		63.306	1.1989	1	2904100			40399	15569	27834	27887	45827	45827					0.054488761630864246
LHLAAQKEA	9	Unmodified	_LHLAAQKEA_					0	0	0		ENST00000496467.5_1_9:102861593-102977700:+|nuORF	ENST00000496467.5_1_9:102861593-102977700:+|nuORF	ENST00000496467.5_1_9:102861593-102977700:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.7799377441406	2	490.779816	979.545079	-0.27826	-0.00013657	-0.16598	-8.1461E-05	-0.44425	-0.00021803	490.7796957959635	27.007	1.3361	26.85	26.388	27.724	-0.15664					90	31	5	0	0	0	0.31247	2	1414	1414;1425		73.975	2.679	1	3339300			40400	15569	27834	27887	45828;45829	45828					0.054488761630864246
LHLDGIVQVL	10	Unmodified	_LHLDGIVQVL_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8301391601562	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	1.0393	1	10587	10587		40.778	1.5253	1	1711900			40401	2459	27835	27888	45830	45830					0.10094577919835501
LHLDGIVQVL	10	Unmodified	_LHLDGIVQVL_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8298950195312	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	1.0665	1	10578	10578		37.159	1.9584	1	1748900			40402	2459	27835	27888	45831	45831					0.10094577919835501
LHLDLQKLL	9	Unmodified	_LHLDLQKLL_					0	0	0			REV__ENSG00000169126|ENST00000305242|ODAD2	REV__ENSG00000169126|ENST00000305242|ODAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8416137695312	2	546.842416	1091.67028	-0.54263	-0.00029673	-3.6256	-0.0019826	-4.1682	-0.0022794	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	0.83071	1	12784	12784		37.159	8.0096	1	11370000	+		40403	26322	27836	27889	45832	45832					0.12811168299458586
LHLEKHKTLV	10	Unmodified	_LHLEKHKTLV_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.91876220703125	3	406.583674	1216.72919	0.48481	0.00019712	0.34209	0.00013909	0.82691	0.00033621	406.5838565854485	111.33	0.1537	111.18	111.11	111.26	-0.1469					12	5	3	0	0	0	1.1228	1	13583	13583		22.58	2.5492	1	326600	+		40404	28410	27837	27890	45833	45833					0.12949644593800258
LHLGKSSLP	9	Unmodified	_LHLGKSSLP_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2608642578125	2	476.284734	950.554916	-0.63733	-0.00030355	1.4784	0.00070416	0.84112	0.00040061	476.2854754287244	28.321	0.33292	28.152	28.048	28.38	-0.16897					9	7	2	0	0	0	0.024323	1	1654	1654		53.351	16.192	1	65893			40405	4330	27838	27891	45834	45834					0.07766064168481535
LHLHMIFL	8	Unmodified	_LHLHMIFL_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7688598632812	2	512.294048	1022.57354	-1.0883	-0.00055751	3.9843	0.0020411	2.896	0.0014836	512.295949787444	55.816	0.53791	55.914	55.671	56.209	0.097893					31	14	3	0	0	0	0.027866	1	6084	6084		54.895	17.735	1	518110			40406	3190	27839	27892	45835	45835					0.06315902538665341
LHLHMIFL	8	Unmodified	_LHLHMIFL_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.294048	1022.57354	-0.35676	-0.00018277	3.137	0.0016071	2.7802	0.0014243	512.2955464657502	56.053	0.45847	56.053	55.892	56.351	0	0.066268	-0.00027959	NaN	54.895	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515280			40407	3190	27839	27892							0.06315902538665341
LHLHMIFL	8	Unmodified	_LHLHMIFL_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.294048	1022.57354	-0.39192	-0.00020078	3.1221	0.0015994	2.7302	0.0013987	512.2954511742126	56.179	0.46928	56.023	55.814	56.284	-0.15601	0.036063	-0.00029481	NaN	54.895	33	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549700			40408	3190	27839	27892							0.06315902538665341
LHLHMIFL	8	Unmodified	_LHLHMIFL_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.294048	1022.57354	-0.6508	-0.0003334	3.0685	0.001572	2.4177	0.0012386	512.2959502025989	56.134	0.26829	55.978	55.783	56.052	-0.15655	-0.0090387	-0.00034976	NaN	54.895	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81625			40409	3190	27839	27892							0.06315902538665341
LHLHMIFL	8	Unmodified	_LHLHMIFL_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.294048	1022.57354	-0.83105	-0.00042574	2.6719	0.0013688	1.8409	0.00094306	512.2955198807488	56.182	0.26695	55.966	55.851	56.118	-0.21551	-0.020195	-0.0007561	NaN	54.895	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123580			40410	3190	27839	27892							0.06315902538665341
LHLIKYISAF	10	Unmodified	_LHLIKYISAF_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8114318847656	3	402.241137	1203.70158	0.42856	0.00017239	3.9337	0.0015823	4.3622	0.0017547	402.24268838473665	28.503	0.29763	28.334	28.213	28.51	-0.16897					10	6	2	0	0	0	0.03519	1	1689	1689		26.063	0	1	25394	+		40411	20408	27840	27893	45836	45836					0.10787741333570011
LHLILAVALL	10	Unmodified	_LHLILAVALL_					0	0	0		ENSG00000234776|ENST00000449465|FREY1	ENSG00000234776|ENST00000449465|FREY1	ENSG00000234776|ENST00000449465|FREY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3270874023438	2	538.365527	1074.7165	-0.33769	-0.0001818	-3.5175	-0.0018937	-3.8552	-0.0020755	538.3637155550113	99.665	0.25039	99.66	99.566	99.816	-0.0050812					9	5	2	0	0	0	0.03519	1	12657	12657		7.6903	0	1	70786			40412	10725	27841	27894	45837	45837					0.18213233201549883
LHLKKYGKLT	10	Unmodified	_LHLKKYGKLT_					0	0	0		ENST00000468677.5_1_13:20599458-20605462:+|nuORF	ENST00000468677.5_1_13:20599458-20605462:+|nuORF	ENST00000468677.5_1_13:20599458-20605462:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.9033508300781	3	400.920286	1199.73903	1.7719	0.00071037	-2.861	-0.001147	-1.0891	-0.00043666	400.91949934695236	51.048	0.18804	51.135	51.039	51.227	0.087006					6	4	2	0	0	0	0.03519	1	5327	5327		32.751	1.6824	1	35201			40413	14879	27842	27895	45838	45838					0.1471483259915658
LHLLGPQRR	9	Unmodified	_LHLLGPQRR_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3170776367188	2	545.335624	1088.6567	-0.2622	-0.00014299	2.5195	0.001374	2.2573	0.001231	545.3363538512893	90.066	0.28139	89.928	89.835	90.116	-0.13824					9	6	2	0	0	0	0.024506	1	11029	11029		23.042	0	1	33948	+		40414	23506	27843	27896	45839	45839					0.11591355310883955
LHLLRGAP	8	Unmodified	_LHLLRGAP_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;FRMPD2|p.E1158K|1|0.85|ENSG00000170324|chr10:48168660-48168660|C/T|missense_variant;nc|ENSG00000170324|Q68DX3-5|FRMPD2;nc|ENSG00000170324|Q68DX3-4|FRMPD2;nc|ENSG00000150175|Q6IN97|FRMPD2B	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.8536376953125	2	438.774337	875.534121	0.24957	0.00010951	-0.14589	-6.4012E-05	0.10368	4.5494E-05	438.77407031262317	38.598	0.45719	38.38	38.15	38.607	-0.21848					20	11	3	0	0	0	0.027866	1	3215	3215		23.037	14.214	1	105320			40415	8024	27844	27897	45840	45840					0.0913751857947318
LHLNHRASIV	10	Unmodified	_LHLNHRASIV_					0	0	0			REV__SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|23|2|sense	REV__SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|23|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.3383178710938	2	580.338364	1158.66217	0.29724	0.0001725	-0.55618	-0.00032277	-0.25894	-0.00015027	580.3379811286054	21.653	0.90467	21.476	21.162	22.066	-0.17721					50	18	4	0	0	0	0.71272	1	696	696		66.429	0	1	474690	+		40416	37623	27845	27898	45841	45841					0.08919034102700607
LHLNKNNN	8	Unmodified	_LHLNKNNN_					0	0	0			REV__ENST00000396634.5_1_6:29909081-29910280:+|nuORF	REV__ENST00000396634.5_1_6:29909081-29910280:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.8083801269531	2	483.759415	965.504277	-0.00092701	-4.4845E-07	-0.55762	-0.00026975	-0.55854	-0.0002702	483.75896550351393	21.539	0.33855	21.348	21.177	21.516	-0.19072					9	6	2	0	0	0	0.027866	1	658	658		26.796	7.4361	1	29710	+		40417	31745	27846	27899	45842	45842					0.020145348434652988
LHLNNAVSI	9	Unmodified	_LHLNNAVSI_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3;SLITRK3|p.G354Vfs*35|1|0.23|ENSG00000121871|chr3:165189770-165189770|C/-|frameshift_variant	ENSG00000121871|ENST00000475390|SLITRK3;SLITRK3|p.G354Vfs*35|1|0.23|ENSG00000121871|chr3:165189770-165189770|C/-|frameshift_variant	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.7803955078125	2	490.779816	979.545079	-0.95768	-0.00047001	0.80061	0.00039292	-0.15707	-7.7087E-05	490.78006158235024	27.062	1.1814	26.82	26.372	27.553	-0.24217					68	27	4	0	0	0	0.31247	1	1451	1451		73.975	5.1879	1	3365100			40418	3891;37902	27847	27900	45843	45843					0.054488761630864246
LHLPELLSQ	9	Unmodified	_LHLPELLSQ_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.818603515625	2	525.303124	1048.5917	0.52458	0.00027556	-0.92533	-0.00048608	-0.40075	-0.00021051	525.3016717053339	71.45	0.35139	71.162	70.922	71.273	-0.28857					12	8	2	0	0	0	0.024405	1	8603	8603		44.117	0	1	146600	+	+	40419	19594	27848	27901	45844	45844					0.06934315994385543
LHLPGLGAPVE	11	Unmodified	_LHLPGLGAPVE_					0	0	0		ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2694702148438	2	551.816399	1101.61824	-0.42024	-0.0002319	-4.1119	-0.002269	-4.5322	-0.0025009	552.3164268578131	23.177	0.27577	22.998	22.836	23.112	-0.17989					8	5	2	0	0	0	0.024734	1	865	865		30.504	10.507	1	15840			40420	3724	27849	27902	45845	45845					0.07150004885693306
LHLPKLNNL	9	Unmodified	_LHLPKLNNL_					0	0	0		nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;ENST00000592322.5_1_19:38901850-38916815:-|nuORF;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3082885742188	2	531.326934	1060.63931	-1.3339	-0.00070872	0.15461	8.215E-05	-1.1793	-0.00062657	531.3263746140186	38.107	0.47175	37.886	37.613	38.085	-0.22149					20	13	3	0	0	0	0.024466	1	3120	3120		33.516	8.0654	1	165060			40421	8190	27850	27903	45846	45846					0.1114201498521652
LHLPKLNNL	9	Unmodified	_LHLPKLNNL_					0	0	0		nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;ENST00000592322.5_1_19:38901850-38916815:-|nuORF;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.326934	1060.63931	-0.47898	-0.00025449	-0.57296	-0.00030443	-1.0519	-0.00055893	531.3265408046386	37.898	0.25022	37.718	37.594	37.844	-0.17929	-0.083645	-0.00017108	NaN	40.573	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70357			40422	8190	27850	27903							0.1114201498521652
LHLRNTVVNK	10	Unmodified	_LHLRNTVVNK_					0	0	0			REV__GRM3|p.H837N|1|0.19|ENSG00000198822|chr7:86850487-86850487|C/A|missense_variant	REV__GRM3|p.H837N|1|0.19|ENSG00000198822|chr7:86850487-86850487|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.3590087890625	2	597.359296	1192.70404	0.26733	0.00015969	-1.1499	-0.00068693	-0.88261	-0.00052723	597.3584820835335	98.719	1.4456	98.583	98.147	99.592	-0.13625					99	34	4	0	0	0	1.1197	1	12211	12211		20.947	0	1	2905600	+		40423	36085	27851	27904	45847	45847					0.11539589791209437
LHLRSSVD	8	Unmodified	_LHLRSSVD_					0	0	0		ENSG00000169660|ENST00000327949|HEXD;ENST00000337014.10_2_17:80398960-80400257:+|nuORF;ENST00000577944.5_2_17:80397520-80400257:+|nuORF;ENST00000582429.5_3_17:80398119-80400257:+|nuORF;ENST00000578616.5_3_17:80398383-80400257:+|nuORF	ENSG00000169660|ENST00000327949|HEXD	ENSG00000169660|ENST00000327949|HEXD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.7566833496094	2	463.756341	925.498129	0.60558	0.00028084	-0.4648	-0.00021555	0.14077	6.5285E-05	463.7559924965649	20.802	0.78775	20.607	20.187	20.975	-0.19577					28	15	3	0	0	0	1.0009	1	595	595		37.159	1.5408	1	340300			40424	7962	27852	27905	45848	45848					0.03240016611948704
LHLRVYLQI	9	Unmodified	_LHLRVYLQI_					0	0	0		ENST00000300571.6_1_16:19870928-19871015:-|nuORF	ENST00000300571.6_1_16:19870928-19871015:-|nuORF	ENST00000300571.6_1_16:19870928-19871015:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.8209228515625	2	577.855858	1153.69716	0.97063	0.00056089	4.4821	0.00259	5.4527	0.0031509	578.3595000619472	23.111	0.13813	22.919	22.804	22.942	-0.19117					4	2	2	0	0	0	0.024506	1	841	841		30.504	7.4612	1	16636			40425	11904	27853	27906	45849	45849					0.12646276910641063
LHLSNIPPSV	10	Unmodified	_LHLSNIPPSV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7918701171875	2	538.808574	1075.60259	-1.3318	-0.00071759	3.103	0.0016719	1.7712	0.00095436	539.3128520557987	37.634	0.15722	37.415	37.311	37.468	-0.2195					7	3	3	0	0	0	0.03519	1	3033	3033		39.253	5.7372	1	95531			40426	893;3641;3727	27854	27907	45850	45850					0.06781718368642942
LHLSSLGLSS	10	Unmodified	_LHLSSLGLSS_					0	0	0			REV__ENST00000564440.5_1_15:72491410-72491662:-|nuORF	REV__ENST00000564440.5_1_15:72491410-72491662:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.28515625	2	507.284931	1012.55531	-1.1819	-0.00059955	-0.30953	-0.00015702	-1.4914	-0.00075657	507.28513139359484	30.859	1.6313	30.859	30.592	32.224	0					77	39	4	0	0	0	0.75995	1	2013	2013		63.306	1.1989	1	2354700	+		40427	35247	27855	27908	45851	45851					0.04953439097675982
LHLTIAGLLL	10	Unmodified	_LHLTIAGLLL_					0	0	0			REV__ENSG00000174326|ENST00000574600|SLC16A11	REV__ENSG00000174326|ENST00000574600|SLC16A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.8231811523438	2	532.347335	1062.68012	-0.2708	-0.00014416	-0.43557	-0.00023187	-0.70637	-0.00037603	532.3469254104579	52.337	0.45631	52.19	51.95	52.406	-0.14735					23	11	3	0	0	0	0.03519	1	5596	5596		21.96	0	1	193590	+		40428	26853	27856	27909	45852	45852					0.15128356304853696
LHLTIPMAKLE	11	Unmodified	_LHLTIPMAKLE_					0	0	0			REV__nc|ENSG00000171703|Q15560-2|TCEA2	REV__nc|ENSG00000171703|Q15560-2|TCEA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3694458007812	2	633.367941	1264.72133	-0.22417	-0.00014198	2.0011	0.0012674	1.7769	0.0011254	633.3690599981089	93.272	1.3142	93.128	92.169	93.483	-0.1441					76	30	4	0	0	0	1.0238	1	11467	11467		31.53	1.0262	1	1667300	+		40429	26591	27857	27910	45853	45853					0.09955749282016768
LHLWEIAERFP	11	Unmodified	_LHLWEIAERFP_					0	0	0		ENST00000576468.1_1_16:3241284-3274614:+|nuORF	ENST00000576468.1_1_16:3241284-3274614:+|nuORF	ENST00000576468.1_1_16:3241284-3274614:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.22760009765625	3	470.922467	1409.74557	-1.547	-0.00072853	-2.2797	-0.0010736	-3.8267	-0.0018021	471.2562199102197	33.845	0.42767	33.67	33.469	33.896	-0.17557					20	10	3	0	0	0	0.024782	1	2405	2405		19.263	5.7547	1	86099			40430	17108	27858	27911	45854	45854					0.0570872575985959
LHLWEIAERFP	11	Unmodified	_LHLWEIAERFP_					0	0	0		ENST00000576468.1_1_16:3241284-3274614:+|nuORF	ENST00000576468.1_1_16:3241284-3274614:+|nuORF	ENST00000576468.1_1_16:3241284-3274614:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	470.922467	1409.74557	0.10617	4.9998E-05	-3.426	-0.0016134	-3.3198	-0.0015634	471.2551154247287	34.058	0.40037	33.834	33.522	33.923	-0.22412	0.11141	-0.00027685	NaN	19.263	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102720			40431	17108	27858	27911							0.0570872575985959
LHLWEIAERFP	11	Unmodified	_LHLWEIAERFP_					0	0	0		ENST00000576468.1_1_16:3241284-3274614:+|nuORF	ENST00000576468.1_1_16:3241284-3274614:+|nuORF	ENST00000576468.1_1_16:3241284-3274614:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	470.922467	1409.74557	-0.16524	-7.7816E-05	-3.7004	-0.0017426	-3.8656	-0.0018204	471.25519016566074	33.865	0.42465	33.664	33.442	33.866	-0.20019	-0.058362	-0.00066455	NaN	19.263	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89548			40432	17108	27858	27911							0.0570872575985959
LHLWWPLL	8	Unmodified	_LHLWWPLL_					0	0	0			REV__ENST00000454442.5_1_12:53565050-53565697:-|nuORF	REV__ENST00000454442.5_1_12:53565050-53565697:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2822875976562	2	539.315838	1076.61712	-0.94751	-0.00051101	3.0429	0.0016411	2.0954	0.0011301	539.8165710845403	52.235	0.37841	52.051	51.815	52.193	-0.18404					14	9	2	0	0	0	0.027866	1	5411	5411		33.493	0.68056	1	66941	+		40433	32760	27859	27912	45855	45855					0.0818783530746714
LHLYLGTL	8	Unmodified	_LHLYLGTL_					0	0	0		OR4C16|p.R31H|1|0.07|ENSG00000279514|chr11:55572219-55572219|G/A|missense_variant	OR4C16|p.R31H|1|0.07|ENSG00000279514|chr11:55572219-55572219|G/A|missense_variant	OR4C16|p.R31H|1|0.07|ENSG00000279514|chr11:55572219-55572219|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2583312988281	2	465.276378	928.538203	2.3211	0.00108	-1.42	-0.00066069	0.90112	0.00041927	465.27565004818774	63.599	0.35581	63.653	63.519	63.875	0.054104					15	9	2	0	0	0	0.027866	1	7383	7383		21.702	4.3374	1	136960			40434	18916	27860	27913	45856	45856					0.0710756328254547
LHLYLGTL	8	Unmodified	_LHLYLGTL_					0	0	0		OR4C16|p.R31H|1|0.07|ENSG00000279514|chr11:55572219-55572219|G/A|missense_variant	OR4C16|p.R31H|1|0.07|ENSG00000279514|chr11:55572219-55572219|G/A|missense_variant	OR4C16|p.R31H|1|0.07|ENSG00000279514|chr11:55572219-55572219|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.276378	928.538203	0.20731	9.6454E-05	0.30653	0.00014262	0.51384	0.00023908	465.2770939334985	63.9	0.39382	63.648	63.372	63.765	-0.25141	-0.0023094	0.0011419	NaN	44.531	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79253			40435	18916	27860	27913							0.0710756328254547
LHMVTKPML	9	Oxidation (M)	_LHMVTKPM(Oxidation (M))L_		LHMVTKPM(1)L		LHM(-56)VTKPM(56)L	0	0	1			REV__DNM2|p.I679V|1|0.07|ENSG00000079805|chr19:10825198-10825198|A/G|missense_variant	REV__DNM2|p.I679V|1|0.07|ENSG00000079805|chr19:10825198-10825198|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2960205078125	2	543.29593	1084.57731	-0.36512	-0.00019837	-2.9461	-0.0016006	-3.3112	-0.001799	543.2943785036323	72.538	0.71785	72.261	71.908	72.626	-0.2769					26	16	2	0	0	0	0.43973	1	8490	8490		63.306	15.391	2	2316300	+		40436	19696	27861	27914	45857	45857		606			0.03840204250241186
LHMVTKPML	9	Oxidation (M)	_LHMVTKPM(Oxidation (M))L_		LHMVTKPM(1)L		LHM(-37)VTKPM(37)L	0	0	1			REV__DNM2|p.I679V|1|0.07|ENSG00000079805|chr19:10825198-10825198|A/G|missense_variant	REV__DNM2|p.I679V|1|0.07|ENSG00000079805|chr19:10825198-10825198|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2947998046875	2	543.29593	1084.57731	-0.042985	-2.3354E-05	-3.3647	-0.001828	-3.4076	-0.0018514	543.2941360986251	72.586	0.59575	72.321	72.042	72.638	-0.26479					25	13	2	0	0	0	0.77768	1	8526	8526		40.778	7.2852	2	2194400	+		40437	19696	27861	27914	45858	45858		606			0.03840204250241186
LHNDPEVE	8	Unmodified	_LHNDPEVE_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000574871.1_1_17:4798967-4799168:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2611999511719	2	476.722164	951.429775	-0.74127	-0.00035338	0.75343	0.00035918	0.012167	5.8005E-06	476.72233075070983	29.74	0.5878	29.568	29.284	29.872	-0.17258					20	13	2	0	0	0	0.027866	1	1819	1819		26.796	0	1	90867			40438	6402;1444;5499	27862	27915	45859	45859					-0.047882727585715656
LHNEMQLK	8	Unmodified	_LHNEMQLK_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1;ROCK1-DCC|1|fusion	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7142028808594	2	506.765852	1011.51715	-0.36462	-0.00018478	-2.8013	-0.0014196	-3.166	-0.0016044	507.26424184592577	34.131	0.61579	33.924	33.71	34.326	-0.20695					20	14	3	0	0	0	0.027866	1	2517	2517		38.806	6.8513	1	611820			40439	1373	27863	27916	45860	45860					0.011852299113570552
LHNHQVCVR	9	Unmodified	_LHNHQVCVR_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27;KIF27|p.I538*|1|0.17|ENSG00000165115|chr9:83891492-83891492|T/-|frameshift_variant;KIF27|p.V133Yfs*4|1|0.28|ENSG00000165115|chr9:83908555-83908555|T/-|frameshift_variant	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8291015625	2	553.287817	1104.56108	-0.45304	-0.00025066	2.4789	0.0013715	2.0258	0.0011209	553.2891228326154	48.438	1.0806	48.505	48.191	49.271	0.066795					67	29	4	0	0	0	0.024436	1	4910	4910		38.806	10.552	1	1728600			40440	7365	27864	27917	45861	45861					0.01298259128338941
LHNIESPML	9	Oxidation (M)	_LHNIESPM(Oxidation (M))L_		LHNIESPM(1)L		LHNIESPM(120)L	0	0	1			REV__ENSG00000189357|ENST00000419782|SPATA31D4	REV__ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.2706298828125	2	535.270967	1068.52738	-0.28918	-0.00015479	0.025025	1.3395E-05	-0.26415	-0.00014139	535.2709331041735	52.452	1.4976	52.305	51.777	53.275	-0.14723					101	39	4	0	0	0	0.072054	1	5577	5577		120.62	12.533	1	4485200	+		40441	27882	27865	27918	45862	45862		827			-0.004142071540854886
LHNWYKRLRR	10	Unmodified	_LHNWYKRLRR_					0	0	0			REV__ENST00000430580.6_1_1:16913598-16914274:-|nuORF	REV__ENST00000430580.6_1_1:16913598-16914274:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28265380859375	3	481.2811	1440.82147	0.87515	0.00042119	4.2367	0.002039	5.1118	0.0024602	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.1195	1	12610	12610		20.837	0.52214	1	1033300	+		40442	32356	27866	27919	45863	45863					0.11869167450663554
LHNYLKVTV	9	Unmodified	_LHNYLKVTV_					0	0	0		ENST00000393797.6_2_12:57882466-57882514:-|nuORF	ENST00000393797.6_2_12:57882466-57882514:-|nuORF	ENST00000393797.6_2_12:57882466-57882514:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.81689453125	2	543.818941	1085.62333	-0.036985	-2.0113E-05	-1.1152	-0.00060646	-1.1522	-0.00062657	543.8182979214362	74.189	0.54723	73.924	73.725	74.273	-0.26479					27	14	3	0	0	0	0.31037	2	8754	8754;8763		74.255	5.3856	1	782600			40443	13466	27867	27920	45864;45865	45864					0.08394308748302137
LHPAVSSTP	9	Unmodified	_LHPAVSSTP_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1;WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.74468994140625	2	454.745442	907.476331	0.2342	0.0001065	-1.5466	-0.00070332	-1.3124	-0.00059682	454.744657043267	101.69	1.5633	101.56	100.98	102.54	-0.12576					94	37	4	0	0	0	0.96855	1	12648	12648		26.796	1.3459	1	2405200			40444	941	27868	27921	45866	45866					0.018892118633857535
LHPGLGILTGR	11	Unmodified	_LHPGLGILTGR_					0	0	0		ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3435668945312	2	567.343115	1132.67168	-0.11423	-6.4805E-05	1.7501	0.00099292	1.6359	0.00092812	567.3439617907231	105.98	0.49465	105.98	105.73	106.23	-0.0013123					47	17	3	0	0	0	1.0442	1	13564	13564		26.693	1.1189	1	608790			40445	13881	27869	27922	45867	45867					0.11064802388250428
LHPGLGILTGR	11	Unmodified	_LHPGLGILTGR_					0	0	0		ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.343115	1132.67168	0.059174	3.3572E-05	1.7659	0.0010019	1.8251	0.0010354	567.3437732059919	106.05	0.44482	106.05	105.76	106.2	0	0.020791	-0.00023689	NaN	26.693	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168900			40446	13881	27869	27922							0.11064802388250428
LHPGLGILTGR	11	Unmodified	_LHPGLGILTGR_					0	0	0		ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.343115	1132.67168	0.073155	4.1504E-05	1.3238	0.00075104	1.3969	0.00079255	567.3437332397215	106.09	0.33034	105.97	105.8	106.13	-0.1238	-0.058986	-0.00073854	NaN	26.693	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77465			40447	13881	27869	27922							0.11064802388250428
LHPGLGILTGR	11	Unmodified	_LHPGLGILTGR_					0	0	0		ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.343115	1132.67168	-0.92034	-0.00052215	2.4551	0.0013929	1.5348	0.00087073	567.3443253470194	106.16	0.58723	106.03	105.69	106.27	-0.13279	0.0030637	0.00054513	NaN	26.693	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509080			40448	13881	27869	27922							0.11064802388250428
LHPGLGILTGR	11	Unmodified	_LHPGLGILTGR_					0	0	0		ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	ENST00000415602.5_3_20:62694892-62695267:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	567.343115	1132.67168	0.50123	0.00028437	0.65984	0.00037436	1.1611	0.00065873	567.3434048252001	106.18	0.29079	106.02	105.91	106.2	-0.16132	-0.0080032	-0.0014919	NaN	26.693	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61448			40449	13881	27869	27922							0.11064802388250428
LHPLHAAL	8	Unmodified	_LHPLHAAL_					0	0	0		nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT	nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.74530029296875	2	436.261062	870.507572	-0.061462	-2.6813E-05	3.9092	0.0017054	3.8477	0.0016786	436.26274863818077	35.396	0.1534	35.44	35.343	35.497	0.04406					5	3	2	0	0	0	0.027866	1	2669	2669		33.493	16.128	1	53928			40450	18457	27870	27923	45868	45868					0.06713829688123951
LHPLNYLN	8	Unmodified	_LHPLNYLN_					0	0	0			REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF	REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2713623046875	2	492.269084	982.523616	0.69834	0.00034377	0.58197	0.00028649	1.2803	0.00063026	492.2690552698394	62.967	0.35337	63.021	62.845	63.198	0.054104					14	8	2	0	0	0	0.027866	1	7274	7274		44.531	17.735	1	529490	+		40451	31549	27871	27924	45869	45869					0.03165491134370768
LHPSTHQL	8	Unmodified	_LHPSTHQL_					0	0	0			REV__ENST00000553276.1_1_12:56094358-56094427:-|nuORF	REV__ENST00000553276.1_1_12:56094358-56094427:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.77484130859375	2	466.751059	931.487565	1.8474	0.00086227	1.7616	0.00082221	3.6089	0.0016845	466.75171586965314	20.406	1.2307	20.475	19.972	21.202	0.068901					35	24	2	0	0	0	0.027866	1	572	572		25.45	1.2474	1	49712	+		40452	34969	27872	27925	45870	45870					0.019080339575339167
LHPSTTAPLS	10	Unmodified	_LHPSTTAPLS_					0	0	0		ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.78424072265625	2	512.277106	1022.53966	0.13821	7.0802E-05	-0.61532	-0.00031521	-0.47711	-0.00024441	512.2766800425526	58.486	0.80473	58.577	58.371	59.176	0.091217					42	21	3	0	0	0	0.03519	1	6646	6646		49.442	0	1	487150			40453	9686	27873	27926	45871	45871					0.029291525806115715
LHPVIVETH	9	Unmodified	_LHPVIVETH_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7960815429688	2	522.795466	1043.57638	-0.39154	-0.0002047	3.0131	0.0015752	2.6216	0.0013706	522.7969513620492	39.075	2.5388	38.851	37.759	40.298	-0.22311					131	68	2	0	0	0	0.64155	1	3295	3295		50.025	2.1089	1	2528800	+		40454	20054	27874	27927	45872	45872					0.056334491971938405
LHPWTTTV	8	Unmodified	_LHPWTTTV_					0	0	0		ENST00000379561.5_1_13:41134633-41239748:-|nuORF	ENST00000379561.5_1_13:41134633-41239748:-|nuORF	ENST00000379561.5_1_13:41134633-41239748:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2845764160156	2	477.75581	953.497067	0.17302	8.266E-05	0.14374	6.8674E-05	0.31676	0.00015133	477.75567904254467	55.954	0.80359	55.798	55.517	56.321	-0.15601					46	21	3	0	0	0	0.027866	1	6149	6149		42.474	3.6683	1	819610			40455	13270	27875	27928	45873	45873					0.018458022430422716
LHPWTTTV	8	Unmodified	_LHPWTTTV_					0	0	0		ENST00000379561.5_1_13:41134633-41239748:-|nuORF	ENST00000379561.5_1_13:41134633-41239748:-|nuORF	ENST00000379561.5_1_13:41134633-41239748:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.75581	953.497067	0.99202	0.00047394	-0.71567	-0.00034192	0.27635	0.00013203	477.7552120561037	55.861	0.74081	55.861	55.573	56.314	0	0.058447	-0.00058895	NaN	33.516	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	795820			40456	13270	27875	27928							0.018458022430422716
LHPYQSPSHAG	11	Unmodified	_LHPYQSPSHAG_					0	0	0		nc|ENSG00000160803|Q9NRR5-2|UBQLN4	nc|ENSG00000160803|Q9NRR5-2|UBQLN4	nc|ENSG00000160803|Q9NRR5-2|UBQLN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.2862548828125	2	597.288537	1192.56252	-0.87958	-0.00052536	-2.2965	-0.0013717	-3.1761	-0.0018971	597.2870672402163	25.069	0.56708	24.843	24.581	25.148	-0.22683					34	12	4	0	0	0	1.0392	1	1164	1164		28.081	0	1	502920			40457	18428	27876	27929	45874	45874					-0.026058283018983275
LHQAVDPELNL	11	Unmodified	_LHQAVDPELNL_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2460021972656	3	416.890944	1247.651	-0.25097	-0.00010463	0.012102	5.0452E-06	-0.23887	-9.9583E-05	416.89132152483825	28.387	0.82099	28.235	27.961	28.782	-0.15195					46	19	3	0	0	0	0.02476	1	1672	1672		32.034	3.4574	1	229880	+		40458	22018	27877	27930	45875	45875					0.03708167217928349
LHQDLVTI	8	Unmodified	_LHQDLVTI_					0	0	0			REV__ENST00000468713.5_1_6:30594689-30613691:+|nuORF	REV__ENST00000468713.5_1_6:30594689-30613691:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	469.76904296875	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.099	1	48.166	47.666	48.666	0.066795								0	0	0	0.34661	1	4820	4820		90.777	0	1		+		40459	33112	27878	27931	45876	45876					0.052020714145328384
LHQEIPTL	8	Unmodified	_LHQEIPTL_					0	0	0		LETM1|p.S413L|1|0.11|ENSG00000168924|chr4:1823738-1823738|G/A|missense_variant	LETM1|p.S413L|1|0.11|ENSG00000168924|chr4:1823738-1823738|G/A|missense_variant	LETM1|p.S413L|1|0.11|ENSG00000168924|chr4:1823738-1823738|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.78106689453125	2	475.768917	949.523281	1.7192	0.00081792	1.5028	0.00071496	3.2219	0.0015329	475.7700076478748	17.186	0.20174	17.032	16.907	17.108	-0.15403					5	3	2	0	0	0	0.027866	1	155	155		26.796	0	1	10054			40460	17914	27879	27932	45877	45877					0.04650071414528156
LHQGLPTLKPE	11	Unmodified	_LHQGLPTLKPE_					0	0	0			REV__ENSG00000067248|ENST00000251636|DHX29	REV__ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.89862060546875	3	411.571434	1231.69247	0.96294	0.00039632	-2.3779	-0.00097868	-1.415	-0.00058236	411.57083765269044	18.373	0.54147	18.216	17.854	18.396	-0.15637					15	10	2	0	0	0	0.024757	1	302	302		32.034	9.4545	1	45192	+		40461	20357	27880	27933	45878	45878					0.08589347977272155
LHQGLPTLKPE	11	Unmodified	_LHQGLPTLKPE_					0	0	0			REV__ENSG00000067248|ENST00000251636|DHX29	REV__ENSG00000067248|ENST00000251636|DHX29	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	411.571434	1231.69247	0.75453	0.00031054	0.97225	0.00040015	1.7268	0.00071069	411.90621373720546	18.168	0.29563	18.037	17.957	18.253	-0.13147	-0.1538	0.0028983	NaN	24.276	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14402	+		40462	20357	27880	27933							0.08589347977272155
LHQGLPTLKPE	11	Unmodified	_LHQGLPTLKPE_					0	0	0			REV__ENSG00000067248|ENST00000251636|DHX29	REV__ENSG00000067248|ENST00000251636|DHX29	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	411.571434	1231.69247	3.0784	0.001267	-3.4682	-0.0014274	-0.38973	-0.0001604	411.570020774297	18.465	0.79761	18.223	17.924	18.722	-0.24256	0.03199	-0.0025844	NaN	24.276	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17632	+		40463	20357	27880	27933							0.08589347977272155
LHQINETE	8	Unmodified	_LHQINETE_					0	0	0			REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2741394042969	2	492.243264	982.471974	-0.79715	-0.00039239	-1.8595	-0.00091531	-2.6566	-0.0013077	492.24346704859	38.377	0.49444	38.377	38.102	38.597	0					31	13	4	0	0	0	0.027866	1	3187	3187		85.359	3.0545	1	150220	+		40464	20202	27881	27934	45879	45879					-0.019962973501719716
LHQIVKALSFL	11	Unmodified	_LHQIVKALSFL_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.59735107421875	3	423.595691	1267.76524	0.70865	0.00030018	3.9506	0.0016735	4.6592	0.0019736	423.5972966435126	104.55	0.69975	104.38	104.05	104.75	-0.16791					46	19	4	0	0	0	1.0748	1	13010	13010		11.932	0	1	367880			40465	5543	27882	27935	45880	45880					0.14207101770648478
LHQMILTPIK	10	Unmodified	_LHQMILTPIK_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.3590698242188	2	597.357376	1192.7002	-1.2192	-0.0007283	3.2149	0.0019204	1.9957	0.0011921	597.3590702861352	98.599	1.5555	98.599	98.19	99.746	0					99	35	4	0	0	0	1.1265	1	12690	12690		24.519	0.31644	1	2988700			40466	956	27883	27936	45881	45881					0.11155783973163125
LHQSFFLY	8	Unmodified	_LHQSFFLY_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000529638.1_1_8:145139098-145139832:+|nuORF;ENST00000527653.1_1_8:145139258-145139832:+|nuORF;ENST00000531593.1_1_8:145139661-145140095:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.76806640625	2	527.77146	1053.52837	0.26348	0.00013906	-2.3189	-0.0012238	-2.0554	-0.0010848	527.7711428411625	48.024	0.91039	47.838	47.423	48.334	-0.18684					79	24	5	0	0	0	0.59392	1	4756	4756		76.847	5.5509	1	3619400			40467	10056	27884	27937	45882	45882					0.003743752771470099
LHQVQCPVCQ	10	Unmodified	_LHQVQCPVCQ_					0	0	0		nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.8068237304688	2	577.775893	1153.53723	-0.80659	-0.00046603	4.0432	0.0023361	3.2366	0.00187	577.7775610364238	35.042	0.15049	34.855	34.798	34.948	-0.18675					5	3	2	0	0	0	0.03519	1	2616	2616		27.882	10.517	1	105750			40468	4057	27885	27938	45883	45883					-0.033393424203268296
LHQYCCPTQ	9	Unmodified	_LHQYCCPTQ_					0	0	0		nc|ENSG00000124313|Q5JU85-3|IQSEC2;nc|ENSG00000124313|Q5JU85-4|IQSEC2	nc|ENSG00000124313|Q5JU85-3|IQSEC2	nc|ENSG00000124313|Q5JU85-3|IQSEC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.303466796875	2	546.733694	1091.45284	0.38429	0.0002101	2.2311	0.0012198	2.6154	0.0014299	546.7341853363743	37.252	0.25639	37.252	37.158	37.414	0					8	6	2	0	0	0	0.024523	1	3018	3018		21.96	0	1	62490			40469	18240	27886	27939	45884	45884					-0.0892329323710328
LHRAAKYI	8	Unmodified	_LHRAAKYI_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	486.292894	970.571235	0.99616	0.00048443	4.1355	0.002011	5.1316	0.0024955	486.2935458101811	54.709	0.56259	54.503	54.122	54.685	-0.20613					27	14	3	0	0	0	0.027866	1	5825	5825		52.299	33.975	1	514350	+		40470	25290	27887	27940	45885	45885					0.08477190125222478
LHRAAKYI	8	Unmodified	_LHRAAKYI_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.292894	970.571235	-0.66884	-0.00032525	-1.6027	-0.00077937	-2.2715	-0.0011046	486.29166947485044	54.616	0.99706	54.616	53.872	54.869	0	0.078046	-0.00033651	NaN	52.299	50	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797340	+		40471	25290	27887	27940							0.08477190125222478
LHRAAKYI	8	Unmodified	_LHRAAKYI_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.292894	970.571235	-0.12975	-6.3095E-05	-2.0822	-0.0010126	-2.212	-0.0010757	486.29139904709757	54.738	0.96423	54.588	53.818	54.782	-0.15036	0.049725	-0.0008029	NaN	52.299	44	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818740	+		40472	25290	27887	27940							0.08477190125222478
LHRAAKYI	8	Unmodified	_LHRAAKYI_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.292894	970.571235	0.12035	5.8525E-05	-2.3488	-0.0011422	-2.2285	-0.0010837	486.29132095171457	54.398	1.1379	54.496	53.631	54.769	0.098015	-0.041479	-0.0010622	NaN	52.299	49	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934180	+		40473	25290	27887	27940							0.08477190125222478
LHRALLGLDKF	11	Unmodified	_LHRALLGLDKF_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.K1180Ifs*4|1|0.12|ENSG00000156675|chr8:37870514-37870515|-/AA|frameshift_variant;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8826904296875	2	641.885147	1281.75574	-0.70618	-0.00045328	-3.5966	-0.0023086	-4.3028	-0.0027619	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0805	1	12016	12016		16.717	1.0756	1	3453200			40474	6542	27888	27941	45886	45886					0.1261333348509197
LHRFKNKGKD	10	Unmodified	_LHRFKNKGKD_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2;chr17:68037207-68037330|505|18.06|0.92|4.3|+|ENST00000583269|KPNA2,KPNA2	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.8547973632812	2	621.856921	1241.69929	-0.50097	-0.00031153	-2.8401	-0.0017662	-3.3411	-0.0020777	621.8550528311765	21.141	0.7734	21.213	20.959	21.732	0.071487					41	15	4	0	0	0	1.1314	1	590	590		29.15	0	1	210860			40475	9139	27889	27942	45887	45887					0.08810705648465955
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	625.3679809570312	2	625.365444	1248.71634	0.1794	0.00011219	0.96977	0.00060646	1.1492	0.00071865	625.3657831707372	99.962	0.60004	99.962	99.663	100.26	0					43	15	3	0	0	0	0.43676	5	12790	12767;12776;12781;12790;12801		80.455	36.077	1	2846200			40476	10287	27890	27943	45888;45889;45890;45891;45892	45891					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	625.3671264648438	2	625.365444	1248.71634	0.25049	0.00015665	1.586	0.00099184	1.8365	0.0011485	625.3661055909055	105.28	0.44096	105.28	105.04	105.48	0					29	11	3	0	0	0	0.73399	1	13507	13507		61.691	20.265	1	1382000			40477	10287	27890	27943	45893	45893					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	625.3674926757812	2	625.365444	1248.71634	0.35861	0.00022426	1.3726	0.00085836	1.7312	0.0010826	625.3659585176757	99.882	0.63972	99.892	99.66	100.3	0.010117					45	16	3	0	0	0	0.73399	1	12732	12732		61.691	13.732	1	3763400			40478	10287	27890	27943	45894	45894					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	625.3673095703125	2	625.365444	1248.71634	0.41909	0.00026209	1.4094	0.0008814	1.8285	0.0011435	625.3661581229959	105.22	0.44252	105.22	104.99	105.43	0.00096893					33	12	3	0	0	0	0.73399	1	13484	13484		61.691	26.539	1	1378300			40479	10287	27890	27943	45895	45895					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	625.8685302734375	2	625.365444	1248.71634	-0.14399	-9.0049E-05	1.9128	0.0011962	1.7688	0.0011061	625.366423957791	100	0.64489	99.997	99.693	100.34	-0.0050888					46	17	3	0	0	0	0.67171	3	12711	12711;12720;12728		65.465	24.039	1	3233000			40480	10287	27890	27943	45896;45897;45898	45896					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	625.3666381835938	2	625.365444	1248.71634	-0.35092	-0.00021946	2.3999	0.0015008	2.0489	0.0012813	625.3666955724143	105.32	0.42418	105.32	105.09	105.52	-0.0015945					29	12	3	0	0	0	0.67171	1	13456	13456		65.465	29.019	1	1686700			40481	10287	27890	27943	45899	45899					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	625.368408203125	2	625.365444	1248.71634	0.65152	0.00040744	0.78037	0.00048802	1.4319	0.00089546	625.3656791516368	100.02	0.72812	99.885	99.595	100.32	-0.13364					60	21	3	0	0	0	0.58492	6	12424	12387;12397;12405;12416;12424;12427		70.816	27.952	1	5225100			40482	10287	27890	27943	45900;45901;45902;45903;45904;45905	45904					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	625.3680419921875	2	625.365444	1248.71634	0.17392	0.00010876	1.754	0.0010969	1.9279	0.0012057	625.366152307386	105.34	0.58859	105.22	104.97	105.56	-0.12444					28	12	3	0	0	0	0.70358	2	13115	13115;13127		63.534	23.683	1	1657800			40483	10287	27890	27943	45906;45907	45906					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	625.367431640625	2	625.365444	1248.71634	-0.15188	-9.4983E-05	1.5919	0.00099551	1.44	0.00090053	625.3661358024929	100.1	0.71252	99.971	99.602	100.31	-0.12504					62	22	3	0	0	0	0.67171	5	12419	12410;12419;12429;12438;12447		65.465	14.038	1	4831500			40484	10287	27890	27943	45908;45909;45910;45911;45912	45909					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	625.36669921875	2	625.365444	1248.71634	-0.32465	-0.00020303	2.3234	0.0014529	1.9987	0.0012499	625.3667167744693	100.76	0.49556	100.63	100.31	100.81	-0.12503					34	14	3	0	0	0	0.93459	1	12514	12514		49.536	0.094497	1	702600			40485	10287	27890	27943	45913	45913					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	625.3670654296875	2	625.365444	1248.71634	-1.6715	-0.0010453	3.4792	0.0021758	1.8077	0.0011305	625.367402759362	105.46	0.60189	105.33	105.05	105.65	-0.13099					41	18	3	0	0	0	0.82076	3	13127	13127;13139;13152		56.434	18.926	1	1854700			40486	10287	27890	27943	45914;45915;45916	45914					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	625.3662109375	2	625.365444	1248.71634	0.017626	1.1023E-05	1.3423	0.00083944	1.3599	0.00085046	625.3661082987069	100.13	0.72058	99.962	99.695	100.42	-0.17088					59	22	3	0	0	0	0.67171	5	12403	12394;12403;12413;12422;12430		65.465	23.069	1	5545500			40487	10287	27890	27943	45917;45918;45919;45920;45921	45918					0.10192626254297465
LHRGPRSSRAL	11	Unmodified	_LHRGPRSSRAL_					0	0	0		ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	ENSG00000203896|ENST00000309546|LIME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	625.8681030273438	2	625.365444	1248.71634	0.43075	0.00026937	1.5868	0.0009923	2.0175	0.0012617	625.3662978121002	105.37	0.52142	105.2	105.07	105.59	-0.16484					36	14	3	0	0	0	0.82076	4	13122	13118;13122;13128;13134		56.434	16.376	1	2623700			40488	10287	27890	27943	45922;45923;45924;45925	45923					0.10192626254297465
LHRHGPGH	8	Unmodified	_LHRHGPGH_					0	0	0			REV__nc|ENSG00000133619|A5PL33-3|KRBA1	REV__nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2585144042969	2	455.74136	909.468167	-0.17248	-7.8608E-05	-1.0304	-0.00046961	-1.2029	-0.00054822	455.73968459142446	32.106	0.43191	32.169	31.921	32.352	0.062885					17	10	2	0	0	0	0.027866	1	2153	2153		54.765	7.9982	1	430650	+		40489	23381	27891	27944	45926	45926					0.009811224572899846
LHRISKDSL	9	Unmodified	_LHRISKDSL_					0	0	0		nc|ENSG00000109944|Q6NUN7-2|JHY;ENSG00000109944|ENST00000227349|JHY	nc|ENSG00000109944|Q6NUN7-2|JHY	nc|ENSG00000109944|Q6NUN7-2|JHY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.7769775390625	2	534.811648	1067.60874	-0.92935	-0.00049703	1.0583	0.00056601	0.12899	6.8983E-05	534.8125870882918	46.696	1.441	46.543	45.755	47.196	-0.15301					22	15	2	0	0	0	0.024374	1	4592	4592		40.778	19.831	1	421100			40490	3007	27892	27945	45927	45927					0.07764236600178265
LHRKLLQYSD	10	Unmodified	_LHRKLLQYSD_					0	0	0			REV__nc|ENSG00000148835|Q15542-2|TAF5	REV__nc|ENSG00000148835|Q15542-2|TAF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.89013671875	3	424.906816	1271.69862	-0.50846	-0.00021605	-2.6734	-0.001136	-3.1819	-0.001352	424.90668116942095	20.406	0.24636	20.301	20.079	20.326	-0.10477					5	4	2	0	0	0	0.03519	1	512	512		22.58	1.5474	1	16847	+		40491	24639	27893	27946	45928	45928					0.07363866208766012
LHRLTSLLL	9	Unmodified	_LHRLTSLLL_					0	0	0		ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.3001098632812	2	533.342584	1064.67061	-0.53548	-0.00028559	-0.021864	-1.1661E-05	-0.55734	-0.00029725	533.342341441848	61.048	0.18088	61.119	61.022	61.203	0.071125					6	4	2	0	0	0	0.024541	1	6975	6975		30.504	11.4	1	109090			40492	17410	27894	27947	45929	45929					0.14086588019335977
LHRMVTLP	8	Unmodified	_LHRMVTLP_					0	0	0			REV__ENST00000395003.5_2_5:133861968-133887760:+|nuORF	REV__ENST00000395003.5_2_5:133861968-133887760:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.77899169921875	2	483.781305	965.548056	-0.88359	-0.00042746	-2.142	-0.0010363	-3.0256	-0.0014637	483.77997822480285	62.106	0.89185	61.928	61.412	62.304	-0.17781					64	22	4	0	0	0	0.56067	1	6978	6978		79.939	25.175	1	1174400	+		40493	29902	27895	27948	45930	45930					0.06390428016254646
LHRPQGVAQT	10	Unmodified	_LHRPQGVAQT_					0	0	0		ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7646484375	2	553.806897	1105.59924	-0.87604	-0.00048515	0.0087001	4.8182E-06	-0.86734	-0.00048034	553.8069014080894	25.768	0.42507	25.596	25.365	25.79	-0.17151					18	9	3	0	0	0	0.03519	1	1249	1249		14.865	0	1	114160			40494	16158	27896	27949	45931	45931					0.050664683146806055
LHRPQGVAQT	10	Unmodified	_LHRPQGVAQT_					0	0	0		ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.806897	1105.59924	-0.72826	-0.00040332	-0.12298	-6.8105E-05	-0.85124	-0.00047142	553.8068490735684	25.98	0.3726	25.744	25.508	25.88	-0.23603	0.098996	-7.9535E-05	NaN	14.865	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130220			40495	16158	27896	27949							0.050664683146806055
LHRPQGVAQT	10	Unmodified	_LHRPQGVAQT_					0	0	0		ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.806897	1105.59924	-0.23939	-0.00013258	-0.10403	-5.7611E-05	-0.34342	-0.00019019	553.8069626114647	25.766	0.32134	25.595	25.413	25.735	-0.17078	-0.049892	-5.8546E-05	NaN	14.865	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124090			40496	16158	27896	27949							0.050664683146806055
LHRQEEEDL	9	Unmodified	_LHRQEEEDL_					0	0	0			REV__ENSG00000189253|ENST00000329862|TRIM64B	REV__ENSG00000189253|ENST00000329862|TRIM64B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	584.330078125	2	584.783284	1167.55202	-1.4285	-0.00083536	-2.0413	-0.0011937	-3.4697	-0.0020291	584.7821004728007	60.194	0.52803	59.994	59.795	60.323	-0.20016					25	13	3	0	0	0	0.024292	1	6866	6866		58.782	6.4828	1	437760	+		40497	28111	27897	27950	45932	45932					-0.025058557469719744
LHRRPALF	8	Unmodified	_LHRRPALF_					0	0	0			REV__ENST00000270066.10_1_19:44254888-44258989:-|nuORF	REV__ENST00000270066.10_1_19:44254888-44258989:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.766845703125	2	505.306336	1008.59812	-0.68521	-0.00034624	-0.80051	-0.0004045	-1.4857	-0.00075074	505.30597631186254	66.48	0.33732	66.256	66.066	66.403	-0.22374					11	8	3	0	0	0	0.027866	1	7606	7606		35.201	16.876	1	100020	+		40498	29795	27898	27951	45933	45933					0.09416298736425688
LHRRSLSAL	9	Unmodified	_LHRRSLSAL_					0	0	0			REV__ENST00000404992.6_1_2:61729385-61729430:-|nuORF	REV__ENST00000404992.6_1_2:61729385-61729430:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.304443359375	2	526.819807	1051.62506	0.52263	0.00027533	1.7666	0.00093066	2.2892	0.001206	526.8206063047886	98.544	0.62299	98.407	98.147	98.77	-0.13625					22	13	2	0	0	0	0.024541	1	12167	12167		20.947	2.6225	1	120630	+		40499	31904	27899	27952	45934	45934					0.10131362556944623
LHRVTIPLN	9	Unmodified	_LHRVTIPLN_					0	0	0			REV__ENST00000455557.2_1_3:194219211-194219373:-|nuORF	REV__ENST00000455557.2_1_3:194219211-194219373:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2747192382812	2	531.824558	1061.63456	-0.33817	-0.00017985	-0.74062	-0.00039388	-1.0788	-0.00057373	531.8239996310821	50.122	0.38478	49.971	49.745	50.13	-0.1512					18	10	2	0	0	0	0.024477	1	5201	5201		20.947	6.0821	1	185070	+		40500	32781	27900	27953	45935	45935					0.10621130842491766
LHRVTIPLN	9	Unmodified	_LHRVTIPLN_					0	0	0			REV__ENST00000455557.2_1_3:194219211-194219373:-|nuORF	REV__ENST00000455557.2_1_3:194219211-194219373:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.824558	1061.63456	-0.6913	-0.00036765	0.11524	6.1288E-05	-0.57606	-0.00030636	531.8243644454501	49.865	0.39314	49.941	49.656	50.049	0.076099	0.024063	0.00043616	NaN	20.947	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145780	+		40501	32781	27900	27953							0.10621130842491766
LHSARKGT	8	Unmodified	_LHSARKGT_					0	0	0		ENST00000527991.2_1_1:21620715-21620889:-|nuORF	ENST00000527991.2_1_1:21620715-21620889:-|nuORF	ENST00000527991.2_1_1:21620715-21620889:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2516174316406	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0516	1	9409	9409		29.15	29.15	1	1872200			40502	16172	27901	27954	45936	45936					0.04839453677391248
LHSDLERH	8	Unmodified	_LHSDLERH_					0	0	0		ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.78167724609375	2	503.756872	1005.49919	0.93549	0.00047126	2.5514	0.0012853	3.4869	0.0017566	503.7580174009013	87.607	0.36792	87.626	87.388	87.756	0.018555					13	8	2	0	0	0	0.027866	1	10958	10958		35.618	0	1	69229			40503	6166	27902	27955	45937	45937					-0.0033376901915289636
LHSDLLTITIL	11	Unmodified	_LHSDLLTITIL_					0	0	0			REV__ENSG00000205330|ENST00000642104|OR6C1	REV__ENSG00000205330|ENST00000642104|OR6C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8694458007812	2	619.871371	1237.72819	-1.6623	-0.0010304	-1.675	-0.0010383	-3.3373	-0.0020687	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	1.0442	1	11489	11489		26.693	0	1	1925500	+		40504	28673	27903	27956	45938	45938					0.11883385434225602
LHSFKAHLG	9	Unmodified	_LHSFKAHLG_					0	0	0		ENST00000378313.6_2_19:41247612-41247816:-|nuORF	ENST00000378313.6_2_19:41247612-41247816:-|nuORF	ENST00000378313.6_2_19:41247612-41247816:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2695617675781	2	505.282526	1008.5505	0.39117	0.00019765	-3.9654	-0.0020036	-3.5742	-0.001806	505.2804574293663	19.023	0.3452	18.819	18.559	18.904	-0.20371					10	6	3	0	0	0	0.024436	1	347	347		38.806	8.9646	1	57372			40505	13235	27904	27957	45939	45939					0.0465659974557866
LHSHSLAALI	10	Unmodified	_LHSHSLAALI_					0	0	0		ENST00000567071.5_2_15:42700454-42701567:+|nuORF	ENST00000567071.5_2_15:42700454-42701567:+|nuORF	ENST00000567071.5_2_15:42700454-42701567:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8060302734375	2	531.308741	1060.60293	-0.78591	-0.00041756	4.4709	0.0023754	3.685	0.0019579	531.3109002345791	20.761	1.5036	20.656	19.981	21.484	-0.10477					43	30	2	0	0	0	0.03519	1	543	543		37.159	5.6293	1	176440			40506	16954	27905	27958	45940	45940					0.07505138088527019
LHSISVLSPL	10	Unmodified	_LHSISVLSPL_					0	0	0			REV__ENST00000563766.5_1_16:22320737-22320929:+|nuORF	REV__ENST00000563766.5_1_16:22320737-22320929:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.301025390625	2	533.318774	1064.623	-0.62416	-0.00033288	1.2073	0.00064387	0.58313	0.00031099	533.3194966859533	61.013	0.33259	61.013	60.884	61.216	0					13	8	3	0	0	0	0.03519	1	7029	7029		29.15	3.6994	1	331350	+		40507	35233	27906	27959	45941	45941					0.09326889028466212
LHSKNALVQ	9	Unmodified	_LHSKNALVQ_					0	0	0			REV__nc|ENSG00000115107|Q658P3-4|STEAP3	REV__nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2747497558594	2	505.293091	1008.57163	-0.9542	-0.00048215	3.4561	0.0017463	2.5019	0.0012642	505.2945913469613	38.058	0.54193	37.837	37.577	38.119	-0.22149					43	15	4	0	0	0	0.024427	1	3131	3131		42.396	6.7778	1	763340	+		40508	22166	27907	27960	45942	45942					0.0676856505442629
LHSKVREKKN	10	Unmodified	_LHSKVREKKN_					0	0	0		ENSG00000125482|ENST00000334270|TTF1;TTF1|p.K223Rfs*45|1|0.25|ENSG00000125482|chr9:132402154-132402154|T/-|frameshift_variant	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.870028	1237.7255	-0.66003	-0.00040914	-0.31019	-0.00019228	-0.97023	-0.00060142	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0992	1	11601	11601		32.812	2.3088	1	5229800			40509	4109	27908	27961	45943	45943					0.11614974819940471
LHSLASASQVL	11	Unmodified	_LHSLASASQVL_					0	0	0		ENST00000294072.8_2_11:61117466-61117760:-|nuORF	ENST00000294072.8_2_11:61117466-61117760:-|nuORF	ENST00000294072.8_2_11:61117466-61117760:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.319091796875	2	563.316763	1124.61897	0.10361	5.8363E-05	3.6028	0.0020295	3.7064	0.0020879	563.3185949025449	95.66	1.0493	95.664	95.175	96.224	0.0033722					75	24	4	0	0	0	0.67171	1	12163	12163		65.465	1.9315	1	1775500			40510	11811	27909	27962	45944	45944					0.06164799534781196
LHSLASATSPQ	11	Unmodified	_LHSLASATSPQ_					0	0	0		MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|32|3|anti-sense	MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|32|3|anti-sense	MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|32|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.2926025390625	2	556.290745	1110.56694	-0.64621	-0.00035948	-1.6567	-0.00092161	-2.3029	-0.0012811	556.2896887828979	65.515	0.81959	65.264	64.986	65.806	-0.25112					33	19	3	0	0	0	0.79111	1	7476	7476		58.23	1.7961	1	915940			40511	17979	27910	27963	45945	45945					0.016076361210025425
LHSLTIAEA	9	Unmodified	_LHSLTIAEA_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2845764160156	2	477.766374	953.518196	0.23548	0.00011251	0.027403	1.3092E-05	0.26289	0.0001256	477.76628400789673	55.698	1.0607	55.542	55.26	56.321	-0.15601					54	28	4	0	0	0	0.024405	1	6149	6149		44.117	27.644	1	668320			40512	5229	27911	27964	45946	45946					0.039577675518899014
LHSLTIAEA	9	Unmodified	_LHSLTIAEA_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.766374	953.518196	1.3293	0.00063511	-0.99769	-0.00047666	0.33165	0.00015845	477.76570780413056	55.616	1.0671	55.616	55.284	56.351	0	0.026516	-0.0010508	NaN	35.618	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	572740			40513	5229	27911	27964							0.039577675518899014
LHSPQALLAL	10	Unmodified	_LHSPQALLAL_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165283203125	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	0.96965	1	10390	10390		49.442	3.4693	1	1297700	+		40514	23271	27912	27965	45947	45947					0.09498308748334239
LHSSFSRVM	9	Unmodified	_LHSSFSRVM_					0	0	0		ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.248291015625	2	532.271301	1062.52805	-0.44911	-0.00023905	-1.5196	-0.00080886	-1.9687	-0.0010479	532.2701518416154	49.781	0.5315	49.501	49.161	49.693	-0.27977					24	13	2	0	0	0	0.02435	1	4963	4963		60.972	20.194	1	445740			40515	7864	27913	27966	45948	45948					-0.0007136771434943512
LHSSFSRVM	9	Unmodified	_LHSSFSRVM_					0	0	0		ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.271301	1062.52805	0.030091	1.6016E-05	-2.183	-0.0011619	-2.1529	-0.0011459	532.26989868609	49.521	0.52569	49.34	49.191	49.717	-0.18071	-0.055573	-0.00051033	NaN	60.972	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461330			40516	7864	27913	27966							-0.0007136771434943512
LHSSSMPLLE	10	Unmodified	_LHSSSMPLLE_					0	0	0		ENST00000486832.1_1_3:137963948-137964029:+|nuORF;ENST00000485396.5_1_3:137963948-137982602:+|nuORF	ENST00000486832.1_1_3:137963948-137964029:+|nuORF	ENST00000486832.1_1_3:137963948-137964029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.289306640625	2	557.284074	1112.5536	-0.79685	-0.00044407	-0.04797	-2.6733E-05	-0.84482	-0.0004708	557.2824446772482	65.549	0.16714	65.276	65.195	65.362	-0.27282					9	4	3	0	0	0	0.03519	1	7740	7740		45.952	0	1	181130			40517	15327	27914	27967	45949	45949					0.0018206201741577388
LHTGELISK	9	Unmodified	_LHTGELISK_					0	0	0			REV__PEG3|p.I648Sfs*90|1|0.24|ENSG00000198300|chr19:56816504-56816504|C/-|frameshift_variant	REV__PEG3|p.I648Sfs*90|1|0.24|ENSG00000198300|chr19:56816504-56816504|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.73797607421875	2	499.287474	996.560395	-0.11736	-5.8598E-05	2.3742	0.0011854	2.2568	0.0011268	499.2882307614175	33.902	0.5854	33.677	33.485	34.07	-0.22412					21	14	2	0	0	0	0.024374	1	2453	2453		25.574	0	1	197880	+		40518	37367	27915	27968	45950	45950					0.06197742960284813
LHTLAREKSCS	11	Unmodified	_LHTLAREKSCS_					0	0	0			REV__ENST00000478241.6_2_12:56229554-56229878:+|nuORF	REV__ENST00000478241.6_2_12:56229554-56229878:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.5594787597656	3	415.552045	1243.63431	-0.69544	-0.00028899	-1.8326	-0.00076155	-2.5281	-0.0010505	415.8855959841786	26.964	0.38206	26.722	26.529	26.911	-0.24217					11	8	2	0	0	0	0.024726	1	1436	1436		45.908	17.331	1	34795	+		40519	33357	27916	27969	45951	45951					0.022233430603137094
LHTLDARIA	9	Unmodified	_LHTLDARIA_					0	0	0			REV__XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	REV__XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.2748107910156	2	505.293091	1008.57163	-0.96936	-0.00048981	3.7753	0.0019076	2.8059	0.0014178	505.2947913092772	38.102	0.5429	37.884	37.607	38.15	-0.21849					46	15	4	0	0	0	0.024457	1	3111	3111		37.159	0	1	798390	+		40520	23333	27917	27970	45952	45952					0.06768565054403552
LHTPANYLIG	10	Unmodified	_LHTPANYLIG_					0	0	0		ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.783203125	2	549.800749	1097.58694	-1.4654	-0.00080566	-1.7588	-0.000967	-3.2242	-0.0017727	549.7991414031296	26.932	0.39944	27.013	26.883	27.282	0.081293					12	10	2	0	0	0	0.03519	1	1369	1369		26.693	0	1	74820			40521	8903	27918	27971	45953	45953					0.04205431851596586
LHTRKGTG	8	Unmodified	_LHTRKGTG_					0	0	0			REV__nc|ENSG00000056558|Q13077-2|TRAF1	REV__nc|ENSG00000056558|Q13077-2|TRAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.251708984375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0009	1	9478	9478		37.159	6.6555	1	2257900	+		40522	20214	27919	27972	45954	45954					0.04839453677379879
LHTVRPNF	8	Unmodified	_LHTVRPNF_					0	0	0			REV__ENST00000528812.5_1_8:11660522-11660831:+|nuORF	REV__ENST00000528812.5_1_8:11660522-11660831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2741394042969	2	492.274701	982.534849	-1.0619	-0.00052273	-0.48904	-0.00024074	-1.5509	-0.00076347	492.27435575245823	38.128	0.81085	38.128	37.869	38.68	0					44	22	4	0	0	0	0.46709	1	3187	3187		88.643	6.3378	1	9807400	+		40523	34503	27920	27973	45955	45955					0.04288313228516927
LHTVTLQTV	9	Unmodified	_LHTVTLQTV_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MSMS	OPSCC_39_ClassI_Rep-2	2	506.2964782714844	2	506.295299	1010.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.844	1	97.855	97.355	98.355	0.010231								0	0	0	0.65896	1	12455	12455		29.15	0.89528	1				40524	3829	27921	27974	45956	45956					0.07118029477328491
LHVAVAPNT	9	Unmodified	_LHVAVAPNT_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.2849426269531	2	461.261259	920.507966	1.7951	0.000828	-1.306	-0.00060243	0.48903	0.00022557	461.26059232452013	23.42	0.36232	23.229	23.079	23.442	-0.19117					10	8	2	0	0	0	0.024466	1	880	880		31.53	3.6476	1	34959			40525	1878	27922	27975	45957	45957					0.04453204617323081
LHVKRRRIC	9	Unmodified	_LHVKRRRIC_					0	0	0		ENSG00000151882|ENST00000361115|CCL28	ENSG00000151882|ENST00000361115|CCL28	ENSG00000151882|ENST00000361115|CCL28	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.866943359375	2	590.864026	1179.7135	-0.71437	-0.0004221	4.4708	0.0026416	3.7564	0.0022195	590.8669241812987	102.37	1.1116	102.25	101.89	103	-0.12666					79	26	5	0	0	0	0.96855	1	12771	12771		26.796	4.8362	1	4456200			40526	6238	27923	27976	45958	45958					0.13083079595776326
LHVLEGLAA	9	Unmodified	_LHVLEGLAA_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1;ENST00000588511.5_1_19:13223619-13226880:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.7734680175781	2	461.77146	921.528367	0.44825	0.00020699	3.5693	0.0016482	4.0175	0.0018552	461.7731441179029	101.84	0.77296	101.71	101.45	102.23	-0.13156					46	18	4	0	0	0	0.97516	1	12645	12645		25.45	1.2474	1	575760			40527	2618	27924	27977	45959	45959					0.064463752771303
LHVPGRCVS	9	Unmodified	_LHVPGRCVS_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.2591247558594	2	484.260736	966.50692	-0.019979	-9.6748E-06	1.3156	0.00063712	1.2957	0.00062744	484.25802662178376	27.327	1.0094	27.17	26.715	27.724	-0.15664					63	23	5	0	0	0	0.62163	1	1498	1498		51.335	7.2187	1	3021700	+		40528	33266	27925	27978	45960	45960					0.022326669767835483
LHVQPCLEP	9	Unmodified	_LHVQPCLEP_					0	0	0			REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF	REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7928466796875	2	518.268227	1034.5219	-1.0722	-0.00055569	-3.014	-0.001562	-4.0862	-0.0021177	518.266023741001	64.741	0.9773	64.478	64.012	64.989	-0.2626					54	25	3	0	0	0	0.024263	1	7555	7555		42.396	14.514	1	405120	+		40529	32320	27926	27979	45961	45961					0.006021140541179193
LHVSGKLL	8	Unmodified	_LHVSGKLL_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.776611328125	2	433.776545	865.538538	-0.6263	-0.00027168	0.91241	0.00039578	0.2861	0.00012411	433.7767719489303	29.569	0.97945	29.323	29.011	29.99	-0.24524					58	22	4	0	0	0	0.81662	1	1825	1825		57.811	9.8957	1	1530800			40530	2400	27927	27980	45962	45962					0.10038983002368695
LHVSGKLL	8	Unmodified	_LHVSGKLL_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.7767028808594	2	433.776545	865.538538	0.23225	0.00010074	-0.12163	-5.2761E-05	0.11062	4.7982E-05	433.77633686022864	29.506	1.0126	29.356	29.044	30.056	-0.14952					62	23	4	0	0	0	0.56067	1	1805	1805		79.939	3.0926	1	2775200			40531	2400	27927	27980	45963	45963					0.10038983002368695
LHVSVATLPM	10	Unmodified	_LHVSVATLPM_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.3114013671875	2	534.299527	1066.5845	-1.3253	-0.0007081	-1.5688	-0.00083823	-2.8941	-0.0015463	534.2985597723055	22.556	0.69899	22.63	22.413	23.112	0.073954					23	14	2	0	0	0	0.03519	1	774	774		24.203	3.7209	1	176300	+		40532	25396	27928	27981	45964	45964					0.053872601223019956
LHWYATQL	8	Unmodified	_LHWYATQL_					0	0	0		ENSG00000256188|ENST00000539585|TAS2R30	ENSG00000256188|ENST00000539585|TAS2R30	ENSG00000256188|ENST00000539585|TAS2R30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2695922851562	2	516.269084	1030.52362	-0.13397	-6.9165E-05	2.3012	0.001188	2.1672	0.0011189	516.27052545192	51.059	1.5259	51.059	50.21	51.736	0					100	43	5	0	0	0	0.71833	1	5384	5384		65.803	5.5092	1	6683900			40533	10903	27929	27982	45965	45965					0.009574911343861459
LHYAHGDS	8	Unmodified	_LHYAHGDS_					0	0	0		ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2744140625	2	450.203941	898.39333	0.44554	0.00020058	3.9262	0.0017676	4.3717	0.0019682	450.20457587665993	92.1	0.31465	92.11	91.875	92.189	0.009407					13	7	3	0	0	0	0.027866	1	11568	11568		44.531	0	1	77237			40534	846	27930	27983	45966	45966					-0.059931048646149065
LHYAVSTG	8	Unmodified	_LHYAVSTG_					0	0	0			REV__ENSG00000090857|ENST00000288050|PDPR	REV__ENSG00000090857|ENST00000288050|PDPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2187194824219	2	424.21906	846.423567	0.29841	0.00012659	-1.4896	-0.0006319	-1.1912	-0.00050531	424.2183732670556	99.233	1.6227	99.064	98.24	99.863	-0.16863					102	39	4	0	0	0	0.95417	1	12324	12324		44.531	0	1	4500900	+		40535	20885	27931	27984	45967	45967					-0.005787461994259502
LHYFRVGR	8	Unmodified	_LHYFRVGR_					0	0	0		ENST00000549866.5_1_12:100377893-100378199:-|nuORF	ENST00000549866.5_1_12:100377893-100378199:-|nuORF	ENST00000549866.5_1_12:100377893-100378199:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3032836914062	2	524.295968	1046.57738	0.80471	0.00042191	2.5829	0.0013542	3.3876	0.0017761	524.2972796833112	99.886	0.41457	99.76	99.506	99.92	-0.12503					14	11	2	0	0	0	0.027866	1	12403	12403		3.9852	0	1	274440			40536	16571	27932	27985	45968	45968					0.055957083567591326
LHYLSHLSP	9	Unmodified	_LHYLSHLSP_					0	0	0		ENSG00000205758|ENST00000381554|CRYZL1;ENST00000490714.1_1_21:34975667-35014025:-|nuORF;nc|ENSG00000205758|O95825-2|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	ENSG00000205758|ENST00000381554|CRYZL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.248046875	2	533.787641	1065.56073	-0.66932	-0.00035727	2.9912	0.0015967	2.3219	0.0012394	533.7892569179688	63.297	0.52873	63.113	62.704	63.233	-0.18386					17	12	2	0	0	0	0.024436	1	7098	7098		38.806	6.8513	1	161760			40537	10444	27933	27986	45969	45969					0.03057162680147485
LHYQPAAELGK	11	Unmodified	_LHYQPAAELGK_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.83203125	2	613.830037	1225.64552	-0.39352	-0.00024156	3.8547	0.0023662	3.4612	0.0021246	613.8322911620265	98.96	1.0577	98.825	98.412	99.469	-0.13554					70	25	4	0	0	0	0.93459	1	12292	12292		49.536	5.1589	1	990700			40538	887	27934	27987	45970	45970					0.04172488426047494
LHYSIARLLPV	11	Unmodified	_LHYSIARLLPV_					0	0	0			REV__ENSG00000136270|ENST00000258770|TBRG4	REV__ENSG00000136270|ENST00000258770|TBRG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.3842163085938	2	641.387522	1280.76049	-1.2106	-0.00077648	-3.147	-0.0020184	-4.3576	-0.0027949	641.3853345182382	101.41	0.9041	101.28	100.86	101.76	-0.13157					55	19	4	0	0	0	0.96599	1	12606	12606		44.377	19.858	1	899150	+		40539	23642	27935	27988	45971	45971					0.13134217627884937
LHYVASAS	8	Unmodified	_LHYVASAS_					0	0	0			REV__ENST00000519270.1_1_6:114380054-114380156:+|nuORF	REV__ENST00000519270.1_1_6:114380054-114380156:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.2186584472656	2	424.21906	846.423567	0.85808	0.00036401	-2.1296	-0.00090342	-1.2715	-0.00053941	424.21808049737785	98.51	2.2248	98.507	97.634	99.859	-0.0026703					125	51	4	0	0	0	1.0133	1	12562	12562		35.201	0	1	7197400	+		40540	34255	27936	27989	45972	45972					-0.005787461994259502
LIAAAAAIHT	10	Unmodified	_LIAAAAAIHT_					0	0	0			REV__ENSG00000147488|ENST00000689386|ST18	REV__ENSG00000147488|ENST00000689386|ST18	MSMS	OPSCC_39_ClassI_Rep-3	3	476.2848815917969	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.13	1	102.12	101.62	102.62	-0.0054474								0	0	0	0.74846	1	13004	13004		30.504	2.6214	1		+		40541	24560	27937	27990	45973	45973					0.07766064168458797
LIAAAKEL	8	Unmodified	_LIAAAKEL_					0	0	0		ENST00000496105.1_1_3:113169108-113212968:-|nuORF;ENSG00000163611|ENST00000295872|SPICE1	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.76190185546875	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	0.96719	1	11087	11087		42.474	7.2737	1	53595000			40542	7114	27938	27991	45974	45974					0.09099874391188223
LIAAAKEL	8	Unmodified	_LIAAAKEL_					0	0	0		ENST00000496105.1_1_3:113169108-113212968:-|nuORF;ENSG00000163611|ENST00000295872|SPICE1	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	ENST00000496105.1_1_3:113169108-113212968:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.7620544433594	2	414.763104	827.511654	0.17372	7.2053E-05	-3.8235	-0.0015859	-3.6498	-0.0015138	414.76147745809476	87.954	2.2305	87.817	87.304	89.534	-0.13613					149	53	5	0	0	0	0.96719	1	10801	10801		42.474	12.633	1	32442000			40543	7114	27938	27991	45975	45975					0.09099874391188223
LIAAEVHDA	9	Unmodified	_LIAAEVHDA_					0	0	0			REV__ENSG00000127152|ENST00000357195|BCL11B	REV__ENSG00000127152|ENST00000357195|BCL11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.7517395019531	2	469.750724	937.486896	0.096599	4.5377E-05	-0.28664	-0.00013465	-0.19004	-8.9273E-05	469.75053184999325	54.119	1.7012	54.119	53.763	55.464	0					109	48	4	0	0	0	0.22754	1	5927	5927		85.359	3.0545	1	10992000	+		40544	22920	27939	27992	45976	45976					0.01565194517809232
LIAAGVFFTL	10	Unmodified	_LIAAGVFFTL_					0	0	0			REV__ENSG00000171302|ENST00000392446|CANT1	REV__ENSG00000171302|ENST00000392446|CANT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.8555908203125	2	526.312961	1050.61137	0.21479	0.00011305	1.8771	0.00098796	2.0919	0.001101	526.3142341815658	77.084	1.1056	76.832	75.867	76.972	-0.25162					49	26	3	0	0	0	0.03519	1	9170	9170		38.806	14.603	1	191850	+		40545	26559	27940	27993	45977	45977					0.08808692005140983
LIAAKRDN	8	Unmodified	_LIAAKRDN_					0	0	0		ENST00000261778.1_1_16:69118402-69118879:+|nuORF	ENST00000261778.1_1_16:69118402-69118879:+|nuORF	ENST00000261778.1_1_16:69118402-69118879:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7813415527344	2	450.766709	899.518865	0.73415	0.00033093	-2.7502	-0.0012397	-2.016	-0.00090875	450.7644510506143	98.389	0.54497	98.386	98.224	98.769	-0.0020752					16	12	2	0	0	0	0.027866	1	12501	12501		37.159	6.6555	1	80455			40546	11481	27941	27994	45978	45978					0.06508606991610577
LIAAMGPPGG	10	Unmodified	_LIAAMGPPGG_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.30218505859375	2	442.238938	882.463324	0.25642	0.0001134	-0.39705	-0.00017559	-0.14063	-6.2193E-05	442.23861894417786	64.097	0.6861	63.845	63.518	64.204	-0.25141					28	18	2	0	0	0	0.03519	1	7453	7453		26.796	0	1	124840			40547	8503	27942	27995	45979	45979					0.017390574796536384
LIAAMGPPGG	10	Unmodified	_LIAAMGPPGG_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.238938	882.463324	1.467	0.00064875	-1.3187	-0.00058319	0.14824	6.5557E-05	442.23815407247974	63.872	0.50424	63.872	63.522	64.026	0	0.013169	-0.0005431	NaN	26.796	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137120			40548	8503	27942	27995							0.017390574796536384
LIACLLQGCY	10	2 Carbamidomethyl (C)	_LIAC(Carbamidomethyl (C))LLQGC(Carbamidomethyl (C))Y_	LIAC(1)LLQGC(1)Y		LIAC(46)LLQGC(46)Y		0	2	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3-2|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2041320800781	3	404.203477	1209.5886	-0.97374	-0.00039359	1.2651	0.00051137	0.29137	0.00011777	404.20383001318737	60.845	1.0513	60.591	60.294	61.346	-0.25373					64	25	4	0	0	0	1.0002	1	6764	6764		45.972	6.0991	1	2026800			40549	2102	27943	27996	45980	45980	28;29				-0.0078101844626417005
LIAEKLDQL	9	Unmodified	_LIAEKLDQL_					0	0	0			REV__ENSG00000182329|ENST00000498697|KIAA2012	REV__ENSG00000182329|ENST00000498697|KIAA2012	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8099365234375	2	521.810782	1041.60701	-0.44903	-0.00023431	-1.0014	-0.00052255	-1.4505	-0.00075686	521.8103545221695	53.784	1.0834	53.784	53.474	54.558	0					87	30	5	0	0	0	0.025498	1	5831	5831		145.16	7.0933	1	12082000	+		40550	27470	27944	27997	45981	45981					0.0878718279154782
LIAEKLDQL	9	Unmodified	_LIAEKLDQL_					0	0	0			REV__ENSG00000182329|ENST00000498697|KIAA2012	REV__ENSG00000182329|ENST00000498697|KIAA2012	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.809814453125	2	521.810782	1041.60701	-0.48975	-0.00025556	-1.1378	-0.0005937	-1.6275	-0.00084926	521.8103418711199	53.626	1.0494	53.721	53.407	54.456	0.095669					79	29	5	0	0	0	0.041068	1	5734	5734		132.76	1.7265	1	13378000	+		40551	27470	27944	27997	45982	45982					0.0878718279154782
LIAEVQQLP	9	Unmodified	_LIAEVQQLP_					0	0	0		ENST00000452841.1_1_13:19468412-19468619:-|nuORF	ENST00000452841.1_1_13:19468412-19468619:-|nuORF	ENST00000452841.1_1_13:19468412-19468619:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7991638183594	2	505.797675	1009.5808	-0.67459	-0.00034121	1.4087	0.00071252	0.73411	0.00037131	505.7982619122751	80.779	0.84344	80.779	80.415	81.258	0					47	20	3	0	0	0	0.55828	1	10037	10037		55.504	9.532	1	1499200			40552	14541	27945	27998	45983	45983					0.07638913620087351
LIAEVQQLP	9	Unmodified	_LIAEVQQLP_					0	0	0		ENST00000452841.1_1_13:19468412-19468619:-|nuORF	ENST00000452841.1_1_13:19468412-19468619:-|nuORF	ENST00000452841.1_1_13:19468412-19468619:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.79901123046875	2	505.797675	1009.5808	-0.99625	-0.0005039	1.6294	0.00082415	0.63316	0.00032025	505.79839942248833	80.921	0.76334	80.769	80.514	81.277	-0.15168					47	18	4	0	0	0	0.43973	1	10039	10039		63.306	2.3343	1	1395100			40553	14541	27945	27998	45984	45984					0.07638913620087351
LIAFDKNDA	9	Unmodified	_LIAFDKNDA_					0	0	0			REV__ENSG00000105298|ENST00000429344|CACTIN	REV__ENSG00000105298|ENST00000429344|CACTIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.266845703125	2	503.763832	1005.51311	0.23906	0.00012043	-3.0005	-0.0015115	-2.7614	-0.0013911	503.76138117939706	71.545	0.21909	71.556	71.434	71.653	0.010735					12	5	3	0	0	0	0.024405	1	8586	8586		44.117	0.49075	1	107980	+		40554	21510	27946	27999	45985	45985					0.010574636892670242
LIAFIIQY	8	Unmodified	_LIAFIIQY_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.248046875	2	490.794404	979.574254	0.1088	5.3397E-05	-4.3069	-0.0021138	-4.1981	-0.0020604	490.79220458712905	68.019	0.75452	68.038	67.781	68.536	0.018921					31	19	2	0	0	0	0.027866	1	8132	8132		49.211	0	1	1229900			40555	2412	27947	28000	45986	45986					0.08365020459382322
LIAGATLHVAW	11	Unmodified	_LIAGATLHVAW_					0	0	0		nc|ENSG00000100034|P49593-2|PPM1F;ENSG00000100034|ENST00000263212|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.30810546875	2	576.332216	1150.64988	-0.41264	-0.00023782	1.7032	0.00098162	1.2906	0.0007438	576.3344829296359	75.035	0.20792	74.772	74.65	74.858	-0.26325					6	4	2	0	0	0	0.024724	1	8863	8863		27.882	3.6795	1	30778			40556	2122	27948	28001	45987	45987					0.08057997639662062
LIAHIANGAR	10	Unmodified	_LIAHIANGAR_					0	0	0			REV__ENSG00000110090|ENST00000265641|CPT1A	REV__ENSG00000110090|ENST00000265641|CPT1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2787475585938	2	518.306532	1034.59851	-0.29328	-0.00015201	3.1139	0.001614	2.8207	0.001462	518.3081136771726	77.087	1.0826	76.925	76.316	77.398	-0.16196					43	25	3	0	0	0	0.03519	1	9208	9208		24.203	0	1	1215300	+		40557	21839	27949	28002	45988	45988					0.08259673665611444
LIAHKRTHTG	10	Unmodified	_LIAHKRTHTG_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3298950195312	2	567.330539	1132.64652	-0.38591	-0.00021894	-0.9009	-0.00051111	-1.2868	-0.00073005	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0992	1	11104	11104		32.812	3.6424	1	4298500			40558	4461	27950	28003	45989	45989					0.08550747585650242
LIAHKRTHTG	10	Unmodified	_LIAHKRTHTG_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	0.96965	1	11559	11559		49.442	5.0644	1	13648000			40559	4461	27950	28003	45990	45990					0.08550747585650242
LIAHKRTHTG	10	Unmodified	_LIAHKRTHTG_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3291625976562	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.1286	1	11208	11208		25.574	2.5316	1	18337000			40560	4461	27950	28003	45991	45991					0.08550747585650242
LIAHKRTHTG	10	Unmodified	_LIAHKRTHTG_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3304443359375	2	567.330539	1132.64652	-0.025912	-1.4701E-05	-1.2829	-0.0007278	-1.3088	-0.0007425	567.3297015547128	93.386	0.56843	93.242	92.914	93.483	-0.1441					23	12	2	0	0	0	1.1329	1	11446	11446		27.882	1.1893	1	914870			40561	4461	27950	28003	45992	45992					0.08550747585650242
LIAHKRTHTG	10	Unmodified	_LIAHKRTHTG_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.330322265625	2	567.330539	1132.64652	-0.10453	-5.9304E-05	-1.2225	-0.00069356	-1.327	-0.00075286	567.329698253714	93.908	1.2793	93.76	93.435	94.715	-0.14771					95	29	5	0	0	0	1.0616	1	11541	11541		37.812	0.65241	1	1243400			40562	4461	27950	28003	45993	45993					0.08550747585650242
LIAHVKSLA	9	Unmodified	_LIAHVKSLA_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.3026123046875	2	476.302927	950.591301	-0.46532	-0.00022163	0.31424	0.00014967	-0.15109	-7.1963E-05	476.3028800784044	22.913	0.55407	22.727	22.507	23.061	-0.18539					24	11	4	0	0	0	0.25032	1	853	853		82.305	8.3303	1	312610	+		40563	23370	27951	28004	45994	45994					0.11402941065171035
LIAHVKSLA	9	Unmodified	_LIAHVKSLA_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	476.302927	950.591301	-0.46532	-0.00022163	0.31424	0.00014967	-0.15109	-7.1963E-05	476.3028800784044	22.913	0.55407	22.727	22.507	23.061	-0.18539	4.105E-05	0.00097128	NaN	82.305	24	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312610	+		40564	23370	27951	28004							0.11402941065171035
LIAINFMH	8	Unmodified	_LIAINFMH_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.3024597167969	2	479.762581	957.510608	0.19731	9.466E-05	2.5485	0.0012227	2.7458	0.0013173	479.763655384708	73.471	0.67813	73.194	72.884	73.562	-0.2769					34	16	3	0	0	0	0.027866	1	8619	8619		28.254	0	1	1065000	+		40565	23894	27952	28005	45995	45995					0.03015336750638653
LIAKEDVDF	9	Unmodified	_LIAKEDVDF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2788696289062	2	525.279315	1048.54408	-0.78878	-0.00041433	1.2318	0.00064704	0.44303	0.00023271	525.2797466672889	85.951	1.0179	85.975	85.575	86.593	0.023674					50	23	3	0	0	0	0.024457	1	10790	10790		37.159	12.956	1	1705300			40566	2420;14459	27953	28006	45996	45996					0.021746170035157775
LIAKLEKH	8	Unmodified	_LIAKLEKH_					0	0	0		ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	ENSG00000125352|ENST00000371442|RNF113A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.26092529296875	2	476.302927	950.591301	-0.68447	-0.00032601	-1.7389	-0.00082823	-2.4233	-0.0011542	476.3027537273808	28.388	0.24075	28.142	28.081	28.322	-0.24524					7	5	2	0	0	0	0.027866	1	1679	1679		19.36	1.0356	1	89082			40567	4098	27954	28007	45997	45997					0.11402941065182404
LIALDKWLD	9	Unmodified	_LIALDKWLD_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3233032226562	2	543.813325	1085.6121	-0.14711	-7.9998E-05	1.8708	0.0010174	1.7237	0.00093739	543.8141851406933	82.013	0.83112	81.903	81.765	82.596	-0.11006					30	19	3	0	0	0	0.024405	1	10176	10176		35.618	0	1	541760			40568	724	27955	28008	45998	45998					0.07271486654190085
LIALIALGLL	10	Unmodified	_LIALIALGLL_					0	0	0			REV__ENSG00000204296|ENST00000533191|TSBP1	REV__ENSG00000204296|ENST00000533191|TSBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.323974609375	2	505.354628	1008.6947	-0.63723	-0.00032203	-2.0737	-0.001048	-2.7109	-0.00137	505.3538119699737	79.179	0.74814	79.007	78.736	79.484	-0.17226					29	17	3	0	0	0	0.03519	1	9765	9765		26.796	7.4361	1	502370	+		40569	28587	27956	28009	45999	45999					0.19070428452971555
LIALKKIL	8	Unmodified	_LIALKKIL_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2342224121094	2	456.336239	910.657924	0.85723	0.00039119	-1.2465	-0.00056882	-0.38926	-0.00017763	456.3355951130409	51	0.49963	50.888	50.749	51.249	-0.11163					19	12	2	0	0	0	0.027866	1	5204	5204		21.702	12.88	1	145230			40570	1633	27957	28010	46000	46000					0.19902176627078916
LIALKKIL	8	Unmodified	_LIALKKIL_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.336239	910.657924	0.95317	0.00043497	-1.1456	-0.00052277	-0.19241	-8.7804E-05	456.3355871631671	51.201	0.46377	51.02	50.797	51.261	-0.18071	0.051748	-0.00043799	NaN	4.3163	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144180			40571	1633	27957	28010							0.19902176627078916
LIALTRYAE	9	Unmodified	_LIALTRYAE_					0	0	0			REV__nc|ENSG00000270379|A2RTY3-5|HEATR9	REV__nc|ENSG00000270379|A2RTY3-5|HEATR9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.3028564453125	2	525.303124	1048.5917	0.34328	0.00018032	-0.64285	-0.00033769	-0.29957	-0.00015737	525.3026926763421	63.654	1.0422	63.654	63.126	64.168	0					94	28	4	0	0	0	0.16468	1	7471	7471		96.19	8.4361	1	6369600	+		40572	29162	27958	28011	46001	46001					0.06934315994362805
LIALTRYAE	9	Unmodified	_LIALTRYAE_					0	0	0			REV__nc|ENSG00000270379|A2RTY3-5|HEATR9	REV__nc|ENSG00000270379|A2RTY3-5|HEATR9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.3030395507812	2	525.303124	1048.5917	1.7559	0.00092236	-2.3319	-0.001225	-0.57608	-0.00030262	525.3017732505265	63.719	1.1068	63.773	63.126	64.233	0.054104					100	30	4	0	0	0	0.20967	1	7400	7400		87.754	5.4493	1	6044900	+		40573	29162	27958	28011	46002	46002					0.06934315994362805
LIAMLVVLE	9	Unmodified	_LIAMLVVLE_					0	0	0		ENST00000472190.5_1_1:233765551-233807273:+|nuORF;ENSG00000135750|ENST00000366621|KCNK1	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	ENST00000472190.5_1_1:233765551-233807273:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.8076171875	2	500.809196	999.60384	0.0087155	4.3648E-06	-2.8433	-0.001424	-2.8346	-0.0014196	500.807541045539	107.06	0.52048	106.94	106.74	107.26	-0.1238					31	16	3	0	0	0	0.75282	1	13321	13321		42.474	1.9018	1	261950			40574	4928	27959	28012	46003	46003					0.10402216413217502
LIANIAENSV	10	Unmodified	_LIANIAENSV_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15;ENST00000478827.1_1_13:41367302-41376286:+|nuORF	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3267822265625	2	522.290214	1042.56587	-0.25104	-0.00013112	-0.035632	-1.861E-05	-0.28667	-0.00014973	522.2898653264489	55.726	0.6279	55.57	55.331	55.958	-0.15602					25	14	2	0	0	0	0.03519	1	6112	6112		51.193	22.043	1	484050			40575	2423	27960	28013	46004	46004					0.04629421752088092
LIAQGPVKTY	10	Unmodified	_LIAQGPVKTY_					0	0	0		AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant;AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant;nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant	AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3163452148438	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0719	1	11243	11243		36.447	2.2742	1	12792000			40576	84	27961	28014	46005	46005					0.08222889028479585
LIAQGPVKTY	10	Unmodified	_LIAQGPVKTY_					0	0	0		AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant;AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant;nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant	AMPD1|p.Y639Tfs*5|1|0.11|ENSG00000116748|chr1:114674067-114674067|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.31640625	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.0719	1	10479	10479		36.447	0.82846	1	4936700			40577	84	27961	28014	46006	46006					0.08222889028479585
LIAQINPLI	9	Unmodified	_LIAQINPLI_					0	0	0			REV__ENST00000456007.1_1_2:33281402-33281501:-|nuORF	REV__ENST00000456007.1_1_2:33281402-33281501:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2558898925781	2	497.81841	993.622267	-0.15254	-7.5935E-05	0.72878	0.0003628	0.57624	0.00028686	497.81840629482184	80.365	0.46549	80.365	80.078	80.544	0					15	10	2	0	0	0	0.024386	1	9966	9966		42.474	0	1	105700	+		40578	32792	27962	28015	46007	46007					0.1252009437940842
LIAQINPLI	9	Unmodified	_LIAQINPLI_					0	0	0			REV__ENST00000456007.1_1_2:33281402-33281501:-|nuORF	REV__ENST00000456007.1_1_2:33281402-33281501:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.81841	993.622267	-1.0037	-0.00049964	0.98439	0.00049005	-0.019258	-9.5869E-06	497.8184493461675	80.548	0.38095	80.397	80.133	80.514	-0.15168	0.016538	-6.5218E-05	NaN	68.485	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66810	+		40579	32792	27962	28015							0.1252009437940842
LIAQIPELN	9	Unmodified	_LIAQIPELN_					0	0	0		chr11:88149955-88173412|361|15.44|0.49|4.98|-|1|TE_info:MIR,MIR_dup116649,MIR,SINE,donor,-,88173412,88173497|RAB38,None|2	chr11:88149955-88173412|361|15.44|0.49|4.98|-|1|TE_info:MIR,MIR_dup116649,MIR,SINE,donor,-,88173412,88173497|RAB38,None|2	chr11:88149955-88173412|361|15.44|0.49|4.98|-|1|TE_info:MIR,MIR_dup116649,MIR,SINE,donor,-,88173412,88173497|RAB38,None|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7983093261719	2	505.797675	1009.5808	-0.67459	-0.00034121	1.4087	0.00071252	0.73411	0.00037131	505.7982619122751	80.779	0.84344	80.779	80.415	81.258	0					47	20	3	0	0	0	0.67687	1	10062	10062		47.657	3.2801	1	1499200			40580	314	27963	28016	46008	46008					0.07638913620075982
LIAQLLAR	8	Unmodified	_LIAQLLAR_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.7544250488281	2	449.297645	896.580737	-0.7293	-0.00032767	0.8035	0.00036101	0.074192	3.3334E-05	449.2979334452509	39.492	0.34723	39.393	39.234	39.582	-0.098755					16	9	2	0	0	0	0.027866	1	3400	3400		20.482	0	1	201320	+		40581	20987	27964	28017	46009	46009					0.12830958410745552
LIASAEHIE	9	Unmodified	_LIASAEHIE_					0	0	0			REV__ENST00000480786.1_1_21:45553579-45560342:+|nuORF	REV__ENST00000480786.1_1_21:45553579-45560342:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7947998046875	2	491.763832	981.513111	0.15241	7.4949E-05	0.53969	0.0002654	0.69209	0.00034035	491.764343989342	48.374	0.28246	48.187	48.015	48.298	-0.18684					11	7	2	0	0	0	0.024294	1	4771	4771		37.159	12.956	1	68989	+		40582	25297	27965	28018	46010	46010					0.021614636892763883
LIASETPGKN	10	Unmodified	_LIASETPGKN_					0	0	0		ENSG00000100665|ENST00000557004|SERPINA4	ENSG00000100665|ENST00000557004|SERPINA4	ENSG00000100665|ENST00000557004|SERPINA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2847290039062	2	515.282389	1028.55022	-0.78762	-0.00040585	4.393	0.0022636	3.6053	0.0018578	515.2845123020854	82.345	1.3976	82.371	81.859	83.257	0.025711					61	32	3	0	0	0	0.67706	1	10190	10190		68.787	5.4806	1	1626900			40583	2237	27966	28019	46011	46011					0.03709135235044414
LIASLASTSSH	11	Unmodified	_LIASLASTSSH_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8133544921875	2	543.793121	1085.57169	-0.64396	-0.00035018	-3.1499	-0.0017129	-3.7939	-0.0020631	544.293300439151	93.473	0.21847	93.329	93.22	93.439	-0.1441					7	4	2	0	0	0	0.024783	1	11485	11485		42.396	8.2236	1	14877	+		40584	20777	27967	28020	46012	46012					0.032325202637593975
LIASLYNPS	9	Unmodified	_LIASLYNPS_					0	0	0			REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.28936767578125	2	489.26875	976.522947	0.38438	0.00018807	-0.35275	-0.00017259	0.031634	1.5478E-05	489.2684706187982	72.361	1.4222	72.097	71.676	73.099	-0.26479					48	33	3	0	0	0	0.024541	1	8433	8433		17.365	3.5896	1	333580	+		40585	27873	27968	28021	46013	46013					0.033746516946507654
LIATQRDLI	9	Unmodified	_LIATQRDLI_					0	0	0		ENSG00000102021|ENST00000371920|LUZP4;nc|ENSG00000102021|Q9P127-2|LUZP4	ENSG00000102021|ENST00000371920|LUZP4	ENSG00000102021|ENST00000371920|LUZP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8169555664062	2	521.816399	1041.61824	-1.4748	-0.00076958	1.5424	0.00080486	0.067606	3.5278E-05	521.817377216374	64.929	0.92853	64.666	64.379	65.307	-0.2626					81	24	4	0	0	0	0.33245	1	7658	7658		71.296	11.177	1	10600000			40586	2371	27969	28022	46014	46014					0.09910004885705348
LIATSNKV	8	Unmodified	_LIATSNKV_					0	0	0		ENST00000545759.5_1_12:109895733-109895895:-|nuORF	ENST00000545759.5_1_12:109895733-109895895:-|nuORF	ENST00000545759.5_1_12:109895733-109895895:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.2580871582031	2	423.258185	844.501818	0.049741	2.1053E-05	0.0049033	2.0754E-06	0.054645	2.3129E-05	423.2580975681547	27.321	1.0311	27.165	26.887	27.918	-0.15664					65	24	4	0	0	0	0.42327	1	1463	1463		94.006	0	1	3341200			40587	16495	27970	28023	46015	46015					0.07334686385809164
LIATYFTL	8	Unmodified	_LIATYFTL_					0	0	0			REV__ENSG00000143473|ENST00000271751|KCNH1	REV__ENSG00000143473|ENST00000271751|KCNH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2690124511719	2	471.270761	940.52697	0.27441	0.00012932	-4.2671	-0.002011	-3.9927	-0.0018816	471.26860627698454	78.303	1.0331	78.303	77.959	78.993	0					45	24	3	0	0	0	0.78609	1	9683	9683		60.294	1.512	1	2363600	+		40588	24252	27971	28024	46016	46016					0.054327411883718923
LIAVMLVSRTY	11	Unmodified	_LIAVMLVSRTY_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3;nc|ENSG00000117528|P28288-3|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.5816955566406	3	422.581053	1264.72133	0.90621	0.00038295	1.3375	0.0005652	2.2437	0.00094815	422.58153013425874	95.949	3.134	95.826	94.641	97.774	-0.12305					212	71	4	0	0	0	1.0483	1	11862	11862		22.562	0	1	631120			40589	3638	27972	28025	46017	46017					0.09955749282016768
LIAVPWLL	8	Unmodified	_LIAVPWLL_					0	0	0			REV__ENST00000559668.5_1_15:84870350-84870740:-|nuORF	REV__ENST00000559668.5_1_15:84870350-84870740:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7846374511719	2	462.799489	923.584425	-0.88135	-0.00040789	0.43808	0.00020274	-0.44328	-0.00020515	462.8004152509825	43.586	0.24377	43.367	43.246	43.49	-0.21939					8	6	2	0	0	0	0.027866	1	3977	3977		54.895	11.269	1	104590	+		40590	35123	27973	28026	46018	46018					0.11957628184609348
LIAVRVAKQ	9	Unmodified	_LIAVRVAKQ_					0	0	0			REV__nc|ENSG00000160683|P32302-2|CXCR5	REV__nc|ENSG00000160683|P32302-2|CXCR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2743835449219	2	499.329476	996.6444	-0.44806	-0.00022373	-0.081002	-4.0446E-05	-0.52906	-0.00026418	499.32925133043005	20.56	0.39693	20.336	20.117	20.514	-0.22344					16	7	3	0	0	0	0.024436	1	510	510		23.042	10.836	1	76981	+		40591	25333	27974	28027	46019	46019					0.1459431884784408
LIAVTGALAV	10	Unmodified	_LIAVTGALAV_					0	0	0			REV__nc|ENSG00000046653|Q13491-2|GPM6B	REV__nc|ENSG00000046653|Q13491-2|GPM6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2927551269531	2	464.29731	926.580068	-0.063577	-2.9519E-05	0.015628	7.2559E-06	-0.04795	-2.2263E-05	464.29708568665825	61.264	0.47736	61.048	60.831	61.308	-0.21622					17	12	2	0	0	0	0.03519	1	7042	7042		25.45	1.2474	1	211080	+		40592	19657	27975	28028	46020	46020					0.1138411897103424
LIAVYTFQF	9	Unmodified	_LIAVYTFQF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.782958984375	2	551.302593	1100.59063	-0.71164	-0.00039233	4.0153	0.0022136	3.3037	0.0018213	551.3048103511494	27.641	1.0117	27.641	26.951	27.963	0					64	26	3	0	0	0	0.024535	1	1454	1454		18.324	0	1	989460			40593	2494	27976	28029	46021	46021					0.04436101625469746
LIAYTRSL	8	Unmodified	_LIAYTRSL_					0	0	0			REV__DRD1|p.S197L|1|0.12|ENSG00000184845|chr5:175442510-175442510|G/A|missense_variant	REV__DRD1|p.S197L|1|0.12|ENSG00000184845|chr5:175442510-175442510|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7650146484375	2	468.779285	935.544017	0.80975	0.00037959	-0.71229	-0.00033391	0.097455	4.5685E-05	468.7788576987034	71.48	0.79243	71.491	71.162	71.954	0.010735					41	20	3	0	0	0	0.027866	1	8656	8656		40.573	8.6178	1	572470	+		40594	19707	27977	28030	46022	46022					0.07366661794185347
LICFLDLSL	9	Unmodified	_LICFLDLSL_					0	0	0			REV__ENST00000359358.8_1_18:30252788-30252947:-|nuORF	REV__ENST00000359358.8_1_18:30252788-30252947:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.2789916992188	2	518.791004	1035.56745	-1.3456	-0.00069811	3.623	0.0018796	2.2773	0.0011815	518.7922936020544	62.038	0.31706	62.038	61.832	62.149	0					13	8	2	0	0	0	0.024183	1	7175	7175		71.378	13.567	1	577660	+		40595	30877	27978	28031	46023	46023					0.05109339516502587
LICFLDLSL	9	Unmodified	_LICFLDLSL_					0	0	0			REV__ENST00000359358.8_1_18:30252788-30252947:-|nuORF	REV__ENST00000359358.8_1_18:30252788-30252947:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2791137695312	2	518.791004	1035.56745	-0.72824	-0.00037781	2.7111	0.0014065	1.9829	0.0010287	518.7919030193259	62.279	0.31626	62.045	61.796	62.112	-0.23404					12	8	2	0	0	0	0.024262	1	7176	7176		47.916	7.343	1	617180	+		40596	30877	27978	28031	46024	46024					0.05109339516502587
LICKGGPL	8	Carbamidomethyl (C)	_LIC(Carbamidomethyl (C))KGGPL_	LIC(1)KGGPL		LIC(87)KGGPL		0	1	0		ENSG00000197753|ENST00000360215|LHFPL5	ENSG00000197753|ENST00000360215|LHFPL5	ENSG00000197753|ENST00000360215|LHFPL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.2769775390625	2	429.249306	856.484059	0.31969	0.00013723	-0.49292	-0.00021159	-0.17324	-7.4361E-05	429.2488103903327	42.998	0.8598	42.885	42.428	43.288	-0.11253					40	22	3	0	0	0	0.027866	1	3936	3936		86.935	12.418	1	245170			40597	10045	27979	28032	46025	46025	141				0.050076478593155116
LICPLVSEL	9	Unmodified	_LICPLVSEL_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.78302001953125	2	493.783179	985.551804	-0.49094	-0.00024242	0.91803	0.00045331	0.4271	0.00021089	493.783589375499	82.62	0.89951	82.646	82.273	83.172	0.025879					52	20	4	0	0	0	0.36105	1	10255	10255		68.485	5.5063	1	779320	+		40598	26976	27980	28033	46026	46026					0.05845052999438849
LICSFETRATL	11	Unmodified	_LICSFETRATL_					0	0	0		ENST00000472487.5_1_1:59122047-59122251:-|nuORF	ENST00000472487.5_1_1:59122047-59122251:-|nuORF	ENST00000472487.5_1_1:59122047-59122251:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	627.3535766601562	2	627.331556	1252.64856	-0.44392	-0.00027848	-1.8483	-0.0011595	-2.2923	-0.001438	627.3316197382989	76.757	0.46835	76.506	76.314	76.782	-0.25162					15	10	2	0	0	0	0.024727	1	9151	9151		18.262	0	1	75020			40599	14990	27981	28034	46027	46027					0.03233995488585606
LICSKISKL	9	Unmodified	_LICSKISKL_					0	0	0			REV__ENST00000263464.7_1_11:102195487-102195538:+|nuORF	REV__ENST00000263464.7_1_11:102195487-102195538:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.8131408691406	2	502.81227	1003.60999	0.44787	0.00022519	2.342	0.0011776	2.7899	0.0014028	502.8135488206677	96.216	2.0121	96.08	95.682	97.694	-0.13671					136	45	5	0	0	0	0.98128	1	11950	11950		24.203	0	1	16921000	+		40600	29689	27982	28035	46028	46028					0.10832734644725406
LICSYGFIV	9	Unmodified	_LICSYGFIV_					0	0	0			REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF	REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7682800292969	2	507.770071	1013.52559	-0.63032	-0.00032006	-3.6035	-0.0018297	-4.2338	-0.0021498	507.76808491514674	60.584	2.4414	60.584	59.675	62.117	0					199	65	4	0	0	0	0.16533	1	6947	6947		96.048	21.531	1	6914900	+		40601	33513	27983	28036	46029	46029					0.01936783827977706
LICSYGFIV	9	Unmodified	_LICSYGFIV_					0	0	0			REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF	REV__ENST00000483516.1_1_3:193364860-193365959:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.76800537109375	2	507.770071	1013.52559	-1.1368	-0.00057723	-3.0388	-0.001543	-4.1756	-0.0021202	507.76832191894147	60.587	2.2409	60.666	59.863	62.104	0.078888					177	59	4	0	0	0	0.24299	2	6897	6886;6897		83.287	11.991	1	6349000	+		40602	33513	27983	28036	46030;46031	46031					0.01936783827977706
LICTVNTPA	9	Unmodified	_LICTVNTPA_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.24774169921875	2	466.249503	930.484453	1.4435	0.00067304	-1.25	-0.0005828	0.19354	9.024E-05	466.2488127539522	17.237	1.3929	17.083	16.856	18.249	-0.15403					45	27	2	0	0	0	0.87448	1	151	151		34.173	3.6689	1	334490	+		40603	21324	27984	28037	46032	46032					0.0164302278848254
LICVFMKI	8	Unmodified	_LICVFMKI_					0	0	0		ENST00000287474.9_1_1:100195237-100203667:-|nuORF	ENST00000287474.9_1_1:100195237-100203667:-|nuORF	ENST00000287474.9_1_1:100195237-100203667:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.77874755859375	2	483.779385	965.544217	0.00053037	2.5658E-07	0.66676	0.00032257	0.6673	0.00032282	483.7794776106876	62.294	0.74275	62.036	61.546	62.289	-0.25824					42	18	3	0	0	0	0.48546	1	6986	6986		86.935	21.037	1	1189500			40604	11764	27985	28038	46033	46033					0.060066221981742274
LICVFMKI	8	Unmodified	_LICVFMKI_					0	0	0		ENST00000287474.9_1_1:100195237-100203667:-|nuORF	ENST00000287474.9_1_1:100195237-100203667:-|nuORF	ENST00000287474.9_1_1:100195237-100203667:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.779385	965.544217	-0.017372	-8.4041E-06	0.97207	0.00047027	0.9547	0.00046186	483.77952773365365	62.174	0.87262	61.96	61.334	62.206	-0.21375	-0.01452	-7.5068E-05	NaN	86.935	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039400			40605	11764	27985	28038							0.060066221981742274
LICVFMKI	8	Unmodified	_LICVFMKI_					0	0	0		ENST00000287474.9_1_1:100195237-100203667:-|nuORF	ENST00000287474.9_1_1:100195237-100203667:-|nuORF	ENST00000287474.9_1_1:100195237-100203667:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	483.779385	965.544217	-0.88359	-0.00042746	1.8265	0.00088364	0.94295	0.00045618	483.77997822480285	62.106	0.89185	61.928	61.412	62.304	-0.17781	-0.04663	0.00075168	NaN	86.935	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1174400			40606	11764	27985	28038							0.060066221981742274
LICYHGGVLH	10	Unmodified	_LICYHGGVLH_					0	0	0		ENST00000323786.9_2_16:70531840-70531912:-|nuORF	ENST00000323786.9_2_16:70531840-70531912:-|nuORF	ENST00000323786.9_2_16:70531840-70531912:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.3067016601562	2	556.289494	1110.56443	0.0623	3.4657E-05	0.8533	0.00047468	0.9156	0.00050934	556.2886302934431	67.309	3.4678	67.309	66.487	69.954	0					206	88	5	0	0	0	0.03519	1	8358	8358		35.201	13.498	1	3137100			40607	12244	27986	28039	46034	46034					0.013575091823668117
LIDCPLHLCPS	11	Unmodified	_LIDCPLHLCPS_					0	0	0			REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|12|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2037048339844	3	404.203477	1209.5886	-0.97374	-0.00039359	1.2651	0.00051137	0.29137	0.00011777	404.20383001318737	60.845	1.0513	60.591	60.294	61.346	-0.25373					64	25	4	0	0	0	1.0022	1	6777	6777		36.318	1.1656	1	2026800	+		40608	36363	27987	28040	46035	46035					-0.0078101844626417005
LIDEEYQY	8	Unmodified	_LIDEEYQY_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3413696289062	2	536.745305	1071.47606	-0.92628	-0.00049717	2.0529	0.0011019	1.1266	0.00060471	536.7461218766892	50.42	0.59345	50.42	50.146	50.74	0					36	17	3	0	0	0	0.027866	1	5308	5308		55.504	4.1688	1	480600	+		40609	21411	27988	28041	46036	46036					-0.05682252647147834
LIDEFQLL	8	Unmodified	_LIDEFQLL_					0	0	0		ENSG00000142319|ENST00000270349|SLC6A3	ENSG00000142319|ENST00000270349|SLC6A3	ENSG00000142319|ENST00000270349|SLC6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.7805480957031	2	495.778951	989.543348	0.51243	0.00025405	2.5945	0.0012863	3.1069	0.0015403	495.78005374565015	89.197	1.0102	89.175	88.822	89.833	-0.021645					61	23	4	0	0	0	0.71833	1	11209	11209		65.803	0	1	1633500			40610	5552	27989	28042	46037	46037					0.04815822354487409
LIDEKKVEL	9	Unmodified	_LIDEKKVEL_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8201904296875	2	543.823889	1085.63323	-0.91122	-0.00049554	-3.4684	-0.0018862	-4.3797	-0.0023818	543.8204033181283	47.63	2.1834	47.63	47.216	49.399	0					176	63	6	0	0	0	0.72494	1	4835	4835		44.377	3.8046	1	22379000	+		40611	28343	27990	28043	46038	46038					0.09383451963026346
LIDEQDDKVQ	10	Unmodified	_LIDEQDDKVQ_					0	0	0			REV__SH3BP4|p.A599D|1|0.2|ENSG00000130147|chr2:235042565-235042565|C/A|missense_variant	REV__SH3BP4|p.A599D|1|0.2|ENSG00000130147|chr2:235042565-235042565|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.55938720703125	3	401.534825	1201.58265	-0.10651	-4.2768E-05	0.069113	2.7751E-05	-0.037399	-1.5017E-05	401.5346278217332	35.785	1.3517	35.587	34.899	36.251	-0.19829					69	36	3	0	0	0	0.03519	1	2711	2711		10.587	0	1	902920	+		40612	37484	27991	28044	46039	46039					-0.010081221526206718
LIDFALHRQ	9	Unmodified	_LIDFALHRQ_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.7925415039062	2	556.81419	1111.61383	-0.77381	-0.00043087	0.093417	5.2016E-05	-0.68039	-0.00037885	556.8144127847651	57.652	0.49407	57.418	57.129	57.624	-0.23363					18	12	2	0	0	0	0.024374	1	6318	6318		58.782	3.2778	1	179030	+		40613	26442	27992	28045	46040	46040					0.062485404627977914
LIDFTCLNI	9	Unmodified	_LIDFTCLNI_					0	0	0			REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2816162109375	2	526.27826	1050.54197	-1.9174	-0.0010091	4.0622	0.0021378	2.1448	0.0011288	526.2803230118662	91.085	1.1392	91.085	90.845	91.985	0					47	26	2	0	0	0	0.082191	1	11536	11536		116.9	20.713	1	570140	+		40614	30804	27993	28046	46041	46041					0.018718649940410614
LIDFTCLNI	9	Unmodified	_LIDFTCLNI_					0	0	0			REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2808837890625	2	526.27826	1050.54197	-0.56391	-0.00029677	2.742	0.0014431	2.1781	0.0011463	526.2794897041156	91.087	1.1323	91.075	90.869	92.001	-0.012383					71	26	4	0	0	0	0.082191	1	11509	11509		116.9	5.2553	1	607110	+		40615	30804	27993	28046	46042	46042					0.018718649940410614
LIDFTCLNI	9	Unmodified	_LIDFTCLNI_					0	0	0			REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.28125	2	526.27826	1050.54197	0.49792	0.00026205	1.563	0.00082259	2.061	0.0010846	526.2790709482456	91.144	1.2822	91.155	90.909	92.191	0.011276					44	30	2	0	0	0	0.15029	1	11462	11462		99.375	0.74558	1	608680	+		40616	30804	27993	28046	46043	46043					0.018718649940410614
LIDFTCLNI	9	Unmodified	_LIDFTCLNI_					0	0	0			REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	526.27826	1050.54197	-1.9174	-0.0010091	4.0622	0.0021378	2.1448	0.0011288	526.2803230118662	91.085	1.1392	91.085	90.845	91.985	0	-0.019621	0.0013277	NaN	116.9	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570140	+		40617	30804	27993	28046							0.018718649940410614
LIDFTCLNI	9	Unmodified	_LIDFTCLNI_					0	0	0			REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	526.27826	1050.54197	0.49792	0.00026205	1.563	0.00082259	2.061	0.0010846	526.2790709482456	91.144	1.2822	91.155	90.909	92.191	0.011276	0.04997	-0.0013028	NaN	116.9	44	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608680	+		40618	30804	27993	28046							0.018718649940410614
LIDGIRDI	8	Unmodified	_LIDGIRDI_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2953186035156	2	457.768917	913.523281	0.043698	2.0004E-05	-0.032793	-1.5012E-05	0.010905	4.9921E-06	457.7687218070692	55.588	0.83464	55.432	55.16	55.995	-0.15602					46	22	3	0	0	0	0.027866	1	6195	6195		47.916	26.969	1	677220	+		40619	28792	27994	28047	46044	46044					0.06306071414508096
LIDIENPNR	9	Unmodified	_LIDIENPNR_					0	0	0		ENST00000426447.3_1_7:98994307-99001137:-|nuORF;ENSG00000106244|ENST00000350498|PDAP1	ENST00000426447.3_1_7:98994307-99001137:-|nuORF	ENST00000426447.3_1_7:98994307-99001137:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2946166992188	2	542.293288	1082.57202	-0.50446	-0.00027357	3.5909	0.0019473	3.0865	0.0016738	542.2935582505123	72.852	0.38856	72.575	72.411	72.799	-0.2769					13	8	2	0	0	0	0.024495	1	8526	8526		26.693	7.3329	1	56209			40620	2768	27995	28048	46045	46045					0.03403939983604687
LIDKIHTK	8	Unmodified	_LIDKIHTK_					0	0	0		nc|ENSG00000213213|Q5T5S1-3|CCDC183;ENST00000479371.5_1_9:139697227-139701184:+|nuORF;ENST00000415992.5_1_9:139693810-139699267:+|nuORF;nc|ENSG00000213213|Q5T5S1-4|CCDC183;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000371682.7_1_9:139690828-139700853:+|nuORF;nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183	nc|ENSG00000213213|Q5T5S1-3|CCDC183	nc|ENSG00000213213|Q5T5S1-3|CCDC183	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.3003845214844	2	484.300384	966.586216	0.38668	0.00018727	-0.67774	-0.00032823	-0.29106	-0.00014096	484.30006087047553	60.234	1.7019	60.037	59.689	61.391	-0.19742					117	42	5	0	0	0	0.83003	1	6690	6690		56.721	10.749	1	25202000			40621	10495	27996	28049	46046	46046					0.10158637202550835
LIDKKWKPLQ	10	Unmodified	_LIDKKWKPLQ_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	634.8924560546875	2	634.889898	1267.76524	0.034627	2.1984E-05	3.9084	0.0024814	3.943	0.0025034	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	1.1266	1	13348	13348		29.17	1.0886	1	2042800			40622	3389	27997	28050	46047	46047					0.14207101770671215
LIDLIGVLK	9	Unmodified	_LIDLIGVLK_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2924499511719	2	492.328611	982.642668	-1.019	-0.00050167	1.32	0.00064988	0.30104	0.00014821	492.3291193680434	79.531	0.75433	79.359	79.109	79.863	-0.17226					36	17	3	0	0	0	0.022587	1	9846	9846		84.916	10.66	1	389130	+		40623	28200	27998	28051	46048	46048					0.1506526503924306
LIDLIGVLK	9	Unmodified	_LIDLIGVLK_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2924499511719	2	492.328611	982.642668	-0.27094	-0.00013339	0.39484	0.00019439	0.1239	6.0999E-05	492.32869012542085	79.444	0.8266	79.463	79.15	79.977	0.018677					39	19	3	0	0	0	0.020546	1	9782	9782		96.19	11.275	1	349370	+		40624	28200	27998	28051	46049	46049					0.1506526503924306
LIDLIGVLK	9	Unmodified	_LIDLIGVLK_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.328611	982.642668	0.30057	0.00014798	-0.099797	-4.9133E-05	0.20078	9.8848E-05	492.3285411223114	79.303	0.16898	79.153	79.026	79.195	-0.15051	-0.17878	-0.00082196	NaN	96.19	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23302	+		40625	28200	27998	28051							0.1506526503924306
LIDLPPTG	8	Unmodified	_LIDLPPTG_					0	0	0			REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2381896972656	2	413.239461	824.46437	0.064624	2.6705E-05	-3.0455	-0.0012585	-2.9808	-0.0012318	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	1.0133	1	9086	9086		35.201	1.6851	1	908900	+		40626	26171	27999	28052	46050	46050					0.045115951201864846
LIDLPPTG	8	Unmodified	_LIDLPPTG_					0	0	0			REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	REV__nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2377624511719	2	413.239461	824.46437	0.092707	3.831E-05	-3.0236	-0.0012495	-2.9309	-0.0012111	413.23811756919946	76.351	3.9324	76.183	74.993	78.925	-0.16853					174	94	3	0	0	0	0.85409	2	9018	9018;9047		54.765	10.52	1	809840	+		40627	26171	27999	28052	46051;46052	46051					0.045115951201864846
LIDLPVVAQRR	11	Unmodified	_LIDLPVVAQRR_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.26495361328125	3	427.266345	1278.7772	-0.45996	-0.00019653	-4.0555	-0.0017328	-4.5154	-0.0019293	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0592	1	5905	5905		22.562	1.5294	1	57851000			40628	4658	28000	28053	46053	46053					0.14896718513841734
LIDMFWCI	8	Oxidation (M)	_LIDM(Oxidation (M))FWCI_		LIDM(1)FWCI		LIDM(57)FWCI	0	0	1			REV__ENST00000222553.7_1_7:105891375-105891519:-|nuORF	REV__ENST00000222553.7_1_7:105891375-105891519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7482299804688	2	528.748282	1055.48201	0.46157	0.00024405	-0.40762	-0.00021553	0.05395	2.8526E-05	528.7478381280127	84.986	3.1781	84.827	84.02	87.198	-0.15869					155	74	4	0	0	0	0.82104	1	10301	10301		57.453	8.0111	1	2044000	+		40629	29357	28001	28054	46054	46054		856			-0.04351148940827443
LIDMFWCI	8	Oxidation (M)	_LIDM(Oxidation (M))FWCI_		LIDM(1)FWCI		LIDM(55)FWCI	0	0	1			REV__ENST00000222553.7_1_7:105891375-105891519:-|nuORF	REV__ENST00000222553.7_1_7:105891375-105891519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.74853515625	2	528.748282	1055.48201	0.51812	0.00027396	-0.42477	-0.0002246	0.093346	4.9357E-05	528.7478249114087	84.976	3.36	84.838	83.845	87.205	-0.13752					151	78	4	0	0	0	0.85409	1	10262	10262		54.765	7.9982	1	1831100	+		40630	29357	28001	28054	46055	46055		856			-0.04351148940827443
LIDPARFRY	9	Unmodified	_LIDPARFRY_					0	0	0		ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8240356445312	2	575.822015	1149.62948	-0.82074	-0.0004726	3.4453	0.0019839	2.6246	0.0015113	575.8237823931892	44.995	1.506	44.846	44.523	46.029	-0.1488					84	43	3	0	0	0	0.55828	1	4337	4337		55.504	4.1688	1	2149500			40631	3115	28002	28055	46056	46056					0.060648269798548426
LIDREIISHD	10	Unmodified	_LIDREIISHD_					0	0	0		nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	nc|ENSG00000100243|P00387-2|CYB5R3	nc|ENSG00000100243|P00387-2|CYB5R3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.21820068359375	3	404.21906	1209.63535	-0.56914	-0.00023006	-1.3795	-0.0005576	-1.9486	-0.00078766	404.2184923782548	57.381	1.0168	57.148	56.805	57.822	-0.23363					83	26	5	0	0	0	1.0545	1	6227	6227		38.754	0.94209	1	11765000			40632	2159	28003	28056	46057	46057					0.0389188070084856
LIDRHRQL	8	Unmodified	_LIDRHRQL_					0	0	0			REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF	REV__ENST00000467635.6_1_17:28804451-28817236:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.27685546875	2	525.811982	1049.60941	-0.69193	-0.00036382	2.8564	0.0015019	2.1645	0.0011381	525.813272593521	94.147	0.76007	94.147	93.77	94.53	0					44	18	3	0	0	0	0.027866	1	12021	12021		55.504	0	1	591100	+		40633	21749	28004	28057	46058	46058					0.08659076039884894
LIDRLIVP	8	Unmodified	_LIDRLIVP_					0	0	0			REV__ENST00000571814.1_2_17:81042314-81042740:+|nuORF	REV__ENST00000571814.1_2_17:81042314-81042740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7517395019531	2	469.805303	937.596052	-0.11748	-5.5195E-05	0.041108	1.9313E-05	-0.076376	-3.5882E-05	469.80506089015415	54.287	0.78397	54.287	54.01	54.794	0					44	22	3	0	0	0	0.027866	1	5927	5927		106.42	12.409	1	1179400	+		40634	35415	28005	28058	46059	46059					0.12475825207934577
LIDTGEGWL	9	Unmodified	_LIDTGEGWL_					0	0	0		ENST00000478951.5_1_3:111717614-111717758:+|nuORF	ENST00000478951.5_1_3:111717614-111717758:+|nuORF	ENST00000478951.5_1_3:111717614-111717758:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78240966796875	2	502.258382	1002.50221	-0.92919	-0.00046669	-3.2891	-0.001652	-4.2183	-0.0021187	502.7576389576123	44.292	0.63778	44.292	44.12	44.758	0					27	18	2	0	0	0	0.024354	1	4253	4253		57.811	3.0466	1	379810			40635	15157	28006	28059	46060	46060					0.0010606131501162963
LIDTIKKSK	9	Unmodified	_LIDTIKKSK_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7986450195312	2	523.334424	1044.6543	-0.067006	-3.5067E-05	3.6648	0.0019179	3.5978	0.0018828	523.3362415103392	71.252	0.44477	70.98	70.746	71.191	-0.27185					15	9	2	0	0	0	0.024541	1	8326	8326		6.7355	0	1	219180			40636	9889	28007	28060	46061	46061					0.1337546206254956
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7532958984375	2	500.752933	999.491313	-0.67099	-0.000336	0.56372	0.00028228	-0.10728	-5.3719E-05	500.75312562117807	69.366	1.044	69.099	68.66	69.704	-0.26725					73	24	4	0	0	0	0.040175	4	8043	8032;8043;8055;8068		133.47	62.091	1	5494400			40637	3970	28008	28061	46062;46063;46064;46065	46063					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.75341796875	2	500.752933	999.491313	0.14398	7.21E-05	-0.36875	-0.00018465	-0.22476	-0.00011255	500.7526769668036	69.3	1.0338	69.058	68.707	69.74	-0.24278					69	24	4	0	0	0	0.033883	5	8031	8023;8031;8043;8055;8068		138.48	69.995	1	7133400			40638	3970	28008	28061	46066;46067;46068;46069;46070	46067					-0.008453410592892396
LIDVGTGYY	9	Unmodified	_LIDVGTGYY_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7535400390625	2	500.752933	999.491313	-0.55367	-0.00027725	0.16834	8.4299E-05	-0.38533	-0.00019296	500.75303341647356	69.301	0.91151	69.079	68.685	69.597	-0.22245					89	21	6	0	0	0	0.0146	4	8032	8021;8032;8046;8058		163.84	92.549	1	7778800			40639	3970	28008	28061	46071;46072;46073;46074	46072					-0.008453410592892396
LIDVITCAFL	10	Unmodified	_LIDVITCAFL_					0	0	0			REV__nc|ENSG00000108963|Q9BZG8-5|DPH1;REV__ENST00000576129.5_1_17:1936818-1940251:+|nuORF	REV__nc|ENSG00000108963|Q9BZG8-5|DPH1	MSMS	OPSCC_39_ClassI_Rep-3	3	554.3077392578125	2	554.309561	1106.60457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.81	1	100.8	100.3	101.3	-0.0054474								0	0	0	0.77309	1	12821	12821		55.504	4.1688	1		+		40640	36559;21773	28009	28062	46075	46075					0.05553011062238511
LIDVQTLY	8	Unmodified	_LIDVQTLY_					0	0	0			REV__HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	REV__HJURP|p.C310Sfs*22|1|0.3|ENSG00000123485|chr2:233841851-233841851|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.771240234375	2	482.771126	963.527698	-0.089514	-4.3215E-05	0.52068	0.00025137	0.43116	0.00020815	482.77109662965046	95.842	0.83726	95.842	95.519	96.356	0					44	19	4	0	0	0	0.91956	1	12215	12215		49.442	3.4896	1	1053200	+		40641	22701	28010	28063	46076	46076					0.044475358374370444
LIDYDTNFLP	10	Unmodified	_LIDYDTNFLP_					0	0	0			REV__nc|ENSG00000077514|Q15054-3|POLD3	REV__nc|ENSG00000077514|Q15054-3|POLD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.20391845703125	3	404.204528	1209.59175	-0.11795	-4.7678E-05	-2.0744	-0.00083847	-2.1923	-0.00088615	404.2035424769428	60.624	0.75793	60.448	60.156	60.914	-0.1761					54	18	4	0	0	0	1.0236	1	6757	6757		42.864	5.3561	1	2490400	+		40642	20593	28011	28064	46077	46077					-0.004657287962800183
LIDYREAVG	9	Unmodified	_LIDYREAVG_					0	0	0			REV__ENSG00000127329|ENST00000334414|PTPRB	REV__ENSG00000127329|ENST00000334414|PTPRB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.291748046875	2	518.277106	1034.53966	0.093523	4.8471E-05	-0.76392	-0.00039592	-0.6704	-0.00034745	518.2761362387749	54.833	0.17843	54.603	54.459	54.638	-0.23087					6	4	2	0	0	0	0.024523	1	5845	5845		21.96	6.3181	1	44601	+		40643	22927	28012	28065	46078	46078					0.023771525806068894
LIEAFEKAL	9	Unmodified	_LIEAFEKAL_					0	0	0			REV__ENSG00000197872|ENST00000381323|CYRIA	REV__ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.3001098632812	2	517.30005	1032.58555	-0.27569	-0.00014261	0.67353	0.00034842	0.39784	0.0002058	517.3002761995172	93.484	0.50684	93.484	93.051	93.558	0					28	11	3	0	0	0	0.18915	1	11865	11865		90.777	0	1	2210700	+		40644	28355	28013	28066	46079	46079					0.07055797762859584
LIEDRLRV	8	Unmodified	_LIEDRLRV_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3092956542969	2	507.308741	1012.60293	-1.0431	-0.00052917	-0.64497	-0.0003272	-1.6881	-0.00085637	507.3085410053728	43.586	1.6368	43.367	43.032	44.668	-0.21939					155	44	6	0	0	0	0.81662	1	4049	4049		57.811	2.3071	1	106880000	+		40645	23370	28014	28067	46080	46080					0.0971313808852301
LIEEFDFY	8	Unmodified	_LIEEFDFY_					0	0	0			REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF	REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	538.2483520507812	2	538.252766	1074.49098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.143	1	55.928	55.428	56.428	-0.21551								0	0	0	0.33926	1	6054	6054		86.935	2.0191	1		+		40646	22453	28015	28068	46081	46081					-0.04328760779139884
LIEEFDFY	8	Unmodified	_LIEEFDFY_					0	0	0			REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF	REV__ENST00000487555.5_1_9:123623373-123629236:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	538.2491455078125	2	538.252766	1074.49098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.219	1	56.004	55.504	56.504	-0.21551								0	0	0	0.43076	1	6066	6066		62.978	4.1965	1		+		40647	22453	28015	28068	46082	46082					-0.04328760779139884
LIEEISGYL	9	Unmodified	_LIEEISGYL_					0	0	0		ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR	ENSG00000171105|ENST00000302850|INSR	ENSG00000171105|ENST00000302850|INSR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7800903320312	2	518.78169	1035.54883	-1.3425	-0.00069646	-2.0403	-0.0010585	-3.3828	-0.0017549	518.7805579526613	51.41	1.39	51.497	50.926	52.316	0.087006					86	37	4	0	0	0	0.40179	1	5388	5388		65.803	2.4969	1	8677900			40648	8111	28016	28069	46083	46083					0.032475011463020564
LIEETPVL	8	Unmodified	_LIEETPVL_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.26300048828125	2	457.265676	912.516799	-0.063203	-2.8901E-05	-2.1947	-0.0010036	-2.2579	-0.0010325	457.26459602525	78.772	1.7484	78.58	78.135	79.884	-0.1921					79	41	2	0	0	0	1.0133	1	9725	9725		35.201	6.0512	1	810240	+		40649	20567	28017	28070	46084	46084					0.05704133463132166
LIEFNPSH	8	Unmodified	_LIEFNPSH_					0	0	0		nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-2|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;ENSG00000082126|ENST00000409474|MPP4	nc|ENSG00000082126|Q96JB8-5|MPP4	nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7926330566406	2	478.745442	955.476331	0.28855	0.00013814	-0.5167	-0.00024737	-0.22814	-0.00010922	478.74518008535	49.465	0.75791	49.364	48.955	49.713	-0.1008					43	19	3	0	0	0	0.027866	1	4913	4913		73.975	23.95	1	863620			40650	1723	28018	28071	46085	46085					-0.003187881366216061
LIEIKLYTK	9	Unmodified	_LIEIKLYTK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.8522338867188	2	560.85245	1119.69035	0.19003	0.00010658	-1.203	-0.00067468	-1.0129	-0.00056811	560.8514298856466	103.54	0.45993	103.41	103.19	103.65	-0.12724					18	10	2	0	0	0	0.96322	1	12885	12885		27.882	3.6795	1	161080			40651	2483	28019	28072	46086	46086					0.13528919239388415
LIEIKYELTK	10	Unmodified	_LIEIKYELTK_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.9034118652344	3	417.25159	1248.73294	-0.14619	-6.0997E-05	-3.1711	-0.0013232	-3.3173	-0.0013842	417.25015301487025	31.873	0.42236	31.716	31.569	31.991	-0.15772					15	9	2	0	0	0	0.03519	1	2159	2159		38.754	7.1193	1	75024	+		40652	19377	28020	28073	46087	46087					0.11852269576957042
LIEKEKKR	8	Unmodified	_LIEKEKKR_					0	0	0			REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.32421875	2	522.332216	1042.64988	0.27649	0.00014442	-0.075234	-3.9297E-05	0.20125	0.00010512	522.3310188982688	79.458	0.45924	79.307	79.195	79.654	-0.15051					11	10	2	0	0	0	0.027866	1	9476	9476		7.1934	0.45781	1	46754	+		40653	36498	28021	28074	46088	46088					0.13025997639647358
LIEKSRVVY	9	Unmodified	_LIEKSRVVY_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8310546875	2	553.832049	1105.64954	-0.80482	-0.00044573	-0.083018	-4.5978E-05	-0.88783	-0.00049171	553.8319719630811	48.371	1.4141	48.273	47.966	49.381	-0.097553					114	37	5	0	0	0	0.43973	2	4798	4798;4810		63.306	6.5852	1	20399000			40654	18528;8481	28022	28075	46089;46090	46089					0.10094577919812764
LIEKSRVVY	9	Unmodified	_LIEKSRVVY_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8311767578125	2	553.832049	1105.64954	-0.97515	-0.00054007	0.031605	1.7504E-05	-0.94354	-0.00052256	553.8320187004048	48.673	1.4707	48.395	48.078	49.549	-0.27785					120	39	5	0	0	0	0.22754	1	4839	4839		85.359	3.0545	1	19538000			40655	18528;8481	28022	28075	46091	46091					0.10094577919812764
LIEKWELQ	8	Unmodified	_LIEKWELQ_					0	0	0		nc|ENSG00000083544|Q9H7E2-2|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;ENSG00000083544|ENST00000377881|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.326416015625	2	529.797675	1057.5808	-0.29276	-0.0001551	0.23521	0.00012461	-0.057553	-3.0491E-05	529.7976542685252	74.817	1.0574	74.827	74.481	75.539	0.010376					61	26	3	0	0	0	0.027866	1	9063	9063		93.195	10.89	1	1319100			40656	1755	28023	28076	46092	46092					0.05430913620079991
LIELNRYII	9	Unmodified	_LIELNRYII_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	573.8306884765625	2	573.847699	1145.68084	-1.3115	-0.00075261	-0.95328	-0.00054704	-2.2648	-0.0012996	573.8464849142853	54.69	0.3836	54.69	54.524	54.908	0					23	10	3	0	0	0	0.023181	1	5999	5999		82.305	13.518	1	243670	+		40657	25882	28024	28077	46093	46093					0.11383150953906807
LIELNRYII	9	Unmodified	_LIELNRYII_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	573.83056640625	2	573.847699	1145.68084	-0.11733	-6.7327E-05	-1.942	-0.0011144	-2.0593	-0.0011817	573.8462798670871	54.517	0.48991	54.615	54.426	54.916	0.098015					22	13	3	0	0	0	0.023817	1	5894	5894		82.305	15.876	1	205320	+		40658	25882	28024	28077	46094	46094					0.11383150953906807
LIELNRYII	9	Unmodified	_LIELNRYII_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	573.847699	1145.68084	-0.2945	-0.000169	0.017145	9.8385E-06	-0.27736	-0.00015916	573.8474476582469	54.687	0.71828	54.541	54.043	54.761	-0.14609	-0.079908	0.00072107	NaN	82.305	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357700	+		40659	25882	28024	28077							0.11383150953906807
LIELNRYII	9	Unmodified	_LIELNRYII_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	573.847699	1145.68084	-0.17496	-0.0001004	-0.1793	-0.00010289	-0.35427	-0.00020329	573.8474902284698	54.825	0.46955	54.594	54.351	54.821	-0.23087	-0.027166	0.00049561	NaN	82.305	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350390	+		40660	25882	28024	28077							0.11383150953906807
LIELNRYII	9	Unmodified	_LIELNRYII_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	573.847699	1145.68084	0.74862	0.00042959	-1.1561	-0.00066341	-0.40745	-0.00023382	573.846855024508	54.764	0.63597	54.557	54.122	54.758	-0.20613	-0.063455	-0.00062542	NaN	82.305	25	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366500	+		40661	25882	28024	28077							0.11383150953906807
LIELRLTGH	9	Unmodified	_LIELRLTGH_					0	0	0			REV__ENST00000368679.8_1_10:127702365-127702623:-|nuORF	REV__ENST00000368679.8_1_10:127702365-127702623:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.268310546875	2	526.316566	1050.61858	0.32979	0.00017357	-1.123	-0.00059108	-0.79325	-0.0004175	526.3158920119289	52.595	0.729	52.687	52.321	53.05	0.091942					49	18	4	0	0	0	0.024294	1	5624	5624		55.504	6.0627	1	1525400	+		40662	31063	28025	28078	46095	46095					0.09529424605557324
LIENEDEDV	9	Unmodified	_LIENEDEDV_					0	0	0			REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2440185546875	2	538.243126	1074.4717	-1.1984	-0.00064505	2.0664	0.0011122	0.86792	0.00046715	538.2442843963282	55.781	0.58214	55.624	55.312	55.894	-0.15655					52	15	5	0	0	0	0.31037	2	5990	5990;5999		74.255	7.8258	1	10777000	+		40663	36579	28026	28079	46096;46097	46096					-0.06255761860711573
LIEPLRLVK	9	Unmodified	_LIEPLRLVK_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3321533203125	2	540.860609	1079.70667	-0.73509	-0.00039758	0.32586	0.00017625	-0.40922	-0.00022133	540.8606096529529	67.504	0.39616	67.216	66.992	67.388	-0.28834					15	9	2	0	0	0	0.024381	1	8048	8048		45.952	19.259	1	80455	+		40664	23699	28027	28080	46098	46098					0.17000045196164137
LIEQFGWF	8	Unmodified	_LIEQFGWF_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8230590820312	2	520.26601	1038.51747	-0.66208	-0.00034446	-0.63561	-0.00033068	-1.2977	-0.00067514	520.7683903105733	82.684	0.51474	82.711	82.359	82.874	0.026558					17	11	3	0	0	0	0.027866	1	10202	10202		47.916	7.1374	1	106480			40665	5835	28028	28081	46099	46099					-0.0002502709714917728
LIERKSKEQG	10	Unmodified	_LIERKSKEQG_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	594.8309936523438	2	594.340769	1186.66699	-0.60164	-0.00035758	3.7259	0.0022145	3.1243	0.0018569	594.3428595614522	58.544	0.36635	58.356	58.18	58.546	-0.18795					13	8	2	0	0	0	0.03519	1	6411	6411		40.778	10.275	1	151640	+		40666	27334	28029	28082	46100	46100					0.08111873454799934
LIERKSKEQG	10	Unmodified	_LIERKSKEQG_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	594.340769	1186.66699	-0.63414	-0.0003769	4.2675	0.0025364	3.6334	0.0021595	594.3431898254162	58.411	0.28117	58.221	58.136	58.417	-0.19017	-0.076509	0.00076031	NaN	37.812	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184710	+		40667	27334	28029	28082							0.08111873454799934
LIERKSKEQG	10	Unmodified	_LIERKSKEQG_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	594.340769	1186.66699	0.2171	0.00012903	2.1566	0.0012818	2.3737	0.0014108	594.3414121212041	58.557	0.37001	58.316	58.173	58.543	-0.24166	0.018083	-0.0017489	NaN	37.812	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93477	+		40668	27334	28029	28082							0.08111873454799934
LIERVECAIEL	11	Unmodified	_LIERVECAIEL_					0	0	0			REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.9024658203125	3	429.904084	1286.69042	0.17665	7.5944E-05	-4.2603	-0.0018315	-4.0837	-0.0017556	429.9021257633563	110.35	0.86909	110.34	110.08	110.95	-0.0094986					82	33	4	0	0	0	1.0592	1	13933	13933		22.562	1.5294	1	940620	+		40669	23253	28030	28083	46101	46101					0.05854551177094436
LIERVSLGR	9	Unmodified	_LIERVSLGR_					0	0	0			REV__ENST00000492364.1_1_X:19362065-19369554:+|nuORF	REV__ENST00000492364.1_1_X:19362065-19369554:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.765625	2	521.822015	1041.62948	0.28736	0.00014995	3.8974	0.0020337	4.1848	0.0021837	521.8239796939496	79.282	0.45876	79.132	78.862	79.321	-0.15051					16	10	2	0	0	0	0.024354	1	9429	9429		30.504	7.4612	1	83555	+		40670	23235	28031	28084	46102	46102					0.11032826979840138
LIERVSLGR	9	Unmodified	_LIERVSLGR_					0	0	0			REV__ENST00000492364.1_1_X:19362065-19369554:+|nuORF	REV__ENST00000492364.1_1_X:19362065-19369554:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.822015	1041.62948	0.44671	0.0002331	3.686	0.0019234	4.1327	0.0021565	521.8240353936872	79.37	0.41128	79.15	78.832	79.244	-0.21922	0.0094299	-0.00016476	NaN	30.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78305	+		40671	23235	28031	28084							0.11032826979840138
LIESAQARLV	10	Unmodified	_LIESAQARLV_					0	0	0			REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF	REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3270874023438	2	550.327131	1098.63971	-0.26348	-0.000145	-0.47987	-0.00026409	-0.74335	-0.00040909	550.3279305908578	98.909	1.0484	98.919	98.397	99.446	0.010231					50	23	3	0	0	0	1.1286	1	12594	12594		25.574	0	1	216050	+		40672	20040	28032	28085	46103	46103					0.09433389914420331
LIESRAEAQL	10	Unmodified	_LIESRAEAQL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.3162841796875	2	565.31422	1128.61389	-0.55768	-0.00031526	4.113	0.0023251	3.5553	0.0020099	565.3164309945279	95.114	1.291	95.114	94.573	95.864	0					78	29	4	0	0	0	0.80817	1	12090	12090		60.118	1.8883	1	2251100	+		40673	20735	28033	28086	46104	46104					0.054724956721202034
LIEVLSKLD	9	Unmodified	_LIEVLSKLD_					0	0	0			REV__ENST00000378954.8_1_2:38536531-38536564:-|nuORF	REV__ENST00000378954.8_1_2:38536531-38536564:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.796630859375	2	515.313158	1028.61176	-0.41974	-0.0002163	0.35093	0.00018084	-0.06881	-3.5458E-05	515.3132008839083	91.922	0.69929	91.913	91.537	92.236	-0.0082932					30	16	3	0	0	0	0.024477	1	11587	11587		35.618	0	1	99252	+		40674	31421	28034	28087	46105	46105					0.098600669343341
LIEVLSKLD	9	Unmodified	_LIEVLSKLD_					0	0	0			REV__ENST00000378954.8_1_2:38536531-38536564:-|nuORF	REV__ENST00000378954.8_1_2:38536531-38536564:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.313158	1028.61176	0.20844	0.00010741	-1.8554	-0.0009561	-1.6469	-0.00084869	515.3124141472199	91.899	0.2625	91.757	91.616	91.879	-0.14131	-0.18882	-0.002267	NaN	42.396	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40280	+		40675	31421	28034	28087							0.098600669343341
LIEVSVITP	9	Unmodified	_LIEVSVITP_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-5|EBPL	REV__nc|ENSG00000123179|Q9BY08-5|EBPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.80657958984375	2	485.794601	969.574648	-0.51332	-0.00024937	-1.454	-0.00070633	-1.9673	-0.0009557	485.7920390916609	33.854	1.0002	33.854	33.59	34.59	0					41	25	3	0	0	0	0.024405	1	2564	2564		35.618	12.576	1	205160	+		40676	22683	28035	28088	46106	46106					0.08864395388559387
LIEVSVITP	9	Unmodified	_LIEVSVITP_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-5|EBPL	REV__nc|ENSG00000123179|Q9BY08-5|EBPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.794601	969.574648	-0.41489	-0.00020155	-6.565	-0.0031892	-6.9798	-0.0033908	485.79190023010375	33.662	0.62132	33.668	33.461	34.082	0.0066261	0.0071094	-0.00043566	NaN	60.972	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304610	+		40677	22683	28035	28088							0.08864395388559387
LIEVSVITP	9	Unmodified	_LIEVSVITP_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-5|EBPL	REV__nc|ENSG00000123179|Q9BY08-5|EBPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.794601	969.574648	-0.52457	-0.00025483	-5.4902	-0.0026671	-6.0147	-0.0029219	485.7919861781109	33.645	0.75846	33.702	33.461	34.22	0.056572	0.040511	0.0006086	NaN	60.972	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257860	+		40678	22683	28035	28088							0.08864395388559387
LIEVVRAM	8	Unmodified	_LIEVVRAM_					0	0	0			REV__ENST00000512560.5_1_5:79278531-79278720:-|nuORF	REV__ENST00000512560.5_1_5:79278531-79278720:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77734375	2	465.775688	929.536823	-0.52619	-0.00024508	4.4718	0.0020829	3.9456	0.0018378	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	1.0017	1	9855	9855		37.028	1.8278	1	1029300	+		40679	34138	28036	28089	46107	46107					0.06923605922111165
LIFALAKT	8	Unmodified	_LIFALAKT_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7566833496094	2	438.781296	875.54804	0.31464	0.00013806	-3.7743	-0.0016561	-3.4596	-0.001518	438.7795230721432	41.324	0.41703	41.347	41.147	41.564	0.023006					18	11	2	0	0	0	0.027866	1	3619	3619		40.573	0	1	116190			40680	456;1424	28037	28090	46108	46108					0.10528751287893101
LIFCDEVSVS	10	Unmodified	_LIFCDEVSVS_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.8058471679688	2	556.270632	1110.52671	-0.10052	-5.5919E-05	-3.7179	-0.0020682	-3.8184	-0.0021241	556.2686610060241	33.122	0.51905	32.922	32.69	33.209	-0.20019					24	12	3	0	0	0	0.03519	1	2358	2358		34.173	14.176	1	206510			40681	9743	28038	28091	46109	46109					-0.024130465938014822
LIFCHSLSDS	10	Unmodified	_LIFCHSLSDS_					0	0	0		ENST00000335753.8_3_10:105785504-105785564:+|nuORF	ENST00000335753.8_3_10:105785504-105785564:+|nuORF	ENST00000335753.8_3_10:105785504-105785564:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2701416015625	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.152	1	26.984	26.484	27.484	-0.16816								0	0	0	0.75114	1	1471	1471		29.15	0	1				40682	12397	28039	28092	46110	46110					-0.03314511016696997
LIFDPVTREDL	11	Unmodified	_LIFDPVTREDL_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.7536926269531	3	439.906482	1316.69762	-0.27654	-0.00012165	-2.0121	-0.00088514	-2.2887	-0.0010068	439.9055837529037	28.128	0.84446	28.124	27.654	28.499	-0.0042					45	20	3	0	0	0	0.024734	1	1541	1541		16.53	0	1	242040			40683	3468	28040	28093	46111	46111					0.05193607049181992
LIFESDLQL	9	Unmodified	_LIFESDLQL_					0	0	0		ENST00000482945.5_1_15:58889748-58902828:-|nuORF	ENST00000482945.5_1_15:58889748-58902828:-|nuORF	ENST00000482945.5_1_15:58889748-58902828:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2959594726562	2	539.294965	1076.57538	-0.49213	-0.0002654	-0.11206	-6.0436E-05	-0.60419	-0.00032584	539.2946175074579	87.608	1.0112	87.429	87.112	88.123	-0.17874					59	24	4	0	0	0	0.072054	1	10666	10666		120.62	1.8779	1	1205400			40684	15271	28041	28094	46112	46112					0.04015190037625871
LIFFDEID	8	Unmodified	_LIFFDEID_					0	0	0		ENST00000470499.1_1_3:131895005-131895206:+|nuORF;nc|ENSG00000161057|P35998-2|PSMC2;ENSG00000161057|ENST00000292644|PSMC2	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	ENST00000470499.1_1_3:131895005-131895206:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.7978515625	2	506.255308	1010.49606	-0.6928	-0.00035073	-0.85905	-0.0004349	-1.5519	-0.00078563	506.25466541273096	80.731	0.43416	80.731	80.544	80.978	0					17	10	2	0	0	0	0.027866	1	10050	10050		35.201	0	1	86940			40685	6863	28042	28095	46113	46113					-0.008764569165350622
LIFFERIT	8	Unmodified	_LIFFERIT_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.8203735351562	2	519.80276	1037.59097	0.51935	0.00026996	-3.401	-0.0017679	-2.8817	-0.0014979	519.8017761699704	80.693	0.41203	80.487	80.215	80.627	-0.20633					19	9	3	0	0	0	0.027866	1	9657	9657		17.365	0	1	363920	+		40686	23785	28043	28096	46114	46114					0.07367521345327077
LIFFIKHLY	9	Unmodified	_LIFFIKHLY_					0	0	0		ENST00000305901.6_1_15:53049713-53049821:-|nuORF	ENST00000305901.6_1_15:53049713-53049821:-|nuORF	ENST00000305901.6_1_15:53049713-53049821:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.3667602539062	2	597.357702	1192.70085	0.52306	0.00031246	1.3824	0.00082579	1.9055	0.0011382	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	0.90698	1	12330	12330		31.955	7.7521	1	2779900			40687	11994	28044	28097	46115	46115					0.11220946684511546
LIFFIKHLY	9	Unmodified	_LIFFIKHLY_					0	0	0		ENST00000305901.6_1_15:53049713-53049821:-|nuORF	ENST00000305901.6_1_15:53049713-53049821:-|nuORF	ENST00000305901.6_1_15:53049713-53049821:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.3688354492188	2	597.357702	1192.70085	-0.33408	-0.00019956	2.0052	0.0011978	1.6712	0.00099828	597.3587791150173	98.823	1.5113	98.654	98.154	99.666	-0.16862					108	35	4	0	0	0	0.90698	1	12328	12328		31.955	7.4357	1	2695800			40688	11994	28044	28097	46116	46116					0.11220946684511546
LIFGKWME	8	Unmodified	_LIFGKWME_					0	0	0			REV__SH3GL1-STAP2|1|fusion	REV__SH3GL1-STAP2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.327392578125	2	512.270238	1022.52592	-1.023	-0.00052406	2.94	0.0015061	1.9169	0.00098199	512.2717678205169	105.91	0.29005	105.77	105.58	105.87	-0.1328					24	13	2	0	0	0	0.027866	1	13176	13176		20.482	9.6163	1	59856	+		40689	27164	28045	28098	46117	46117					0.015562035478183134
LIFGKWME	8	Unmodified	_LIFGKWME_					0	0	0			REV__SH3GL1-STAP2|1|fusion	REV__SH3GL1-STAP2|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.270238	1022.52592	-0.0032779	-1.6792E-06	1.5522	0.00079516	1.549	0.00079349	512.2706451321986	105.86	0.47392	105.86	105.51	105.99	-0.0013199	0.03969	4.9289E-05	NaN	20.482	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100520	+		40690	27164	28045	28098							0.015562035478183134
LIFGKWME	8	Unmodified	_LIFGKWME_					0	0	0			REV__SH3GL1-STAP2|1|fusion	REV__SH3GL1-STAP2|1|fusion	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	512.270238	1022.52592	-0.20394	-0.00010447	1.4534	0.00074452	1.2494	0.00064005	512.2707861377073	105.96	0.68755	105.96	105.38	106.07	0.00014496	0.14142	-5.2002E-05	NaN	20.482	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110060	+		40691	27164	28045	28098							0.015562035478183134
LIFGKWME	8	Unmodified	_LIFGKWME_					0	0	0			REV__SH3GL1-STAP2|1|fusion	REV__SH3GL1-STAP2|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.270238	1022.52592	0.040462	2.0727E-05	1.2648	0.0006479	1.3052	0.00066863	512.2707098219624	105.82	0.57837	105.69	105.32	105.9	-0.12444	-0.13027	-0.00024524	NaN	20.482	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58857	+		40692	27164	28045	28098							0.015562035478183134
LIFGTDHITT	10	Unmodified	_LIFGTDHITT_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2982788085938	2	559.298039	1116.58152	1.0928	0.0006112	2.6338	0.0014731	3.7266	0.0020843	559.2996732802944	97.763	0.477	97.639	97.372	97.849	-0.12368					17	10	2	0	0	0	1.0781	1	12108	12108		35.618	6.4687	1	140880			40693	18305	28046	28099	46118	46118					0.027897082691197284
LIFHLVKVALL	11	Unmodified	_LIFHLVKVALL_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	633.36962890625	2	633.420834	1264.82712	-0.62833	-0.000398	1.316	0.0008336	0.6877	0.0004356	633.9243345701493	95.864	0.17131	95.727	95.639	95.81	-0.13689					5	3	2	0	0	0	0.024802	1	11839	11839		6.3127	0	1	26436			40694	2071	28047	28100	46119	46119					0.20529453189783453
LIFIFPGLF	9	Unmodified	_LIFIFPGLF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000556938.1_1_14:61518778-61518892:+|nuORF	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2763061523438	2	533.820421	1065.62629	-2.1406	-0.0011427	-2.1876	-0.0011678	-4.3282	-0.0023105	533.8193182794091	52.254	0.67223	51.985	51.76	52.432	-0.26903					34	17	3	0	0	0	0.024475	1	5413	5413		39.021	3.8208	1	649610			40695	5381	28048	28101	46120	46120					0.09610183873132883
LIFKGLFF	8	Unmodified	_LIFKGLFF_					0	0	0			REV__ENSG00000101558|ENST00000400000|VAPA	REV__ENSG00000101558|ENST00000400000|VAPA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7845458984375	2	492.799489	983.584425	0.037175	1.832E-05	0.46754	0.0002304	0.50471	0.00024872	492.8001436334531	46.813	0.14621	46.543	46.415	46.561	-0.26939					5	3	2	0	0	0	0.027866	1	4515	4515		28.254	2.8041	1	175690	+		40696	21243	28049	28102	46121	46121					0.09197628184608675
LIFLFAVLL	9	Unmodified	_LIFLFAVLL_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.8270874023438	2	524.843897	1047.67324	0.79275	0.00041607	-1.0929	-0.00057362	-0.30019	-0.00015755	524.8427149170096	98.009	0.49996	98.007	97.724	98.224	-0.0020752					15	11	2	0	0	0	0.024475	1	12418	12418		29.842	0	1	74411			40697	7975	28050	28103	46122	46122					0.1513104342425322
LIFLSRNIN	9	Unmodified	_LIFLSRNIN_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3015747070312	2	545.324391	1088.63423	-1.5079	-0.00082231	0.10846	5.9147E-05	-1.3995	-0.00076316	545.3239472179575	62.88	0.71339	62.641	62.419	63.132	-0.23926					30	17	3	0	0	0	0.024436	1	7343	7343		16.473	0	1	659800	+		40698	23899	28051	28104	46123	46123					0.09345711122614375
LIFLYIYT	8	Unmodified	_LIFLYIYT_					0	0	0			REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3035278320312	2	523.302062	1044.58957	0.11837	6.1943E-05	2.3255	0.0012169	2.4439	0.0012789	523.3032736484524	85.135	2.651	85.135	83.649	86.3	0					186	62	4	0	0	0	1.0574	1	10649	10649		23.037	1.351	1	2671500	+		40699	34571	28052	28105	46124	46124					0.06905887256561982
LIFLYIYT	8	Unmodified	_LIFLYIYT_					0	0	0			REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.303466796875	2	523.302062	1044.58957	-0.39587	-0.00020716	2.9807	0.0015598	2.5848	0.0013526	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.98906	1	10615	10615		39.021	4.849	1	14072000	+		40700	34571	28052	28105	46125	46125					0.06905887256561982
LIFLYIYT	8	Unmodified	_LIFLYIYT_					0	0	0			REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.303466796875	2	523.302062	1044.58957	0.82974	0.00043421	1.7879	0.0009356	2.6176	0.0013698	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.0362	1	10469	10469		31.579	8.5364	1	3893600	+		40701	34571	28052	28105	46126	46126					0.06905887256561982
LIFLYIYT	8	Unmodified	_LIFLYIYT_					0	0	0			REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	REV__ENST00000531971.1_1_11:118656990-118657077:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3033447265625	2	523.302062	1044.58957	0.50944	0.00026659	2.1609	0.0011308	2.6703	0.0013974	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.94001	1	10388	10388		46.766	2.2354	1	3714800	+		40702	34571	28052	28105	46127	46127					0.06905887256561982
LIFPIGGPG	9	Unmodified	_LIFPIGGPG_					0	0	0			REV__nc|ENSG00000109667|Q9NRM0-2|SLC2A9	REV__nc|ENSG00000109667|Q9NRM0-2|SLC2A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2483825683594	2	435.757821	869.501089	0.91365	0.00039813	-3.4677	-0.0015111	-2.5541	-0.001113	435.75612021157866	71.436	0.62053	71.147	70.844	71.464	-0.28857					26	15	3	0	0	0	0.024289	1	8588	8588		29.842	1.5873	1	319450	+		40703	21805	28053	28106	46128	46128					0.061118917367593895
LIFPIGGPG	9	Unmodified	_LIFPIGGPG_					0	0	0			REV__nc|ENSG00000109667|Q9NRM0-2|SLC2A9	REV__nc|ENSG00000109667|Q9NRM0-2|SLC2A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.2482604980469	2	435.757821	869.501089	0.1291	5.6255E-05	-2.819	-0.0012284	-2.6899	-0.0011721	435.75638460588823	71.367	0.65649	71.105	70.824	71.48	-0.26199					20	15	2	0	0	0	0.024389	1	8309	8309		49.211	13.593	1	290340	+		40704	21805	28053	28106	46129	46129					0.061118917367593895
LIFPQFCF	8	Unmodified	_LIFPQFCF_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.82403564453125	2	507.759507	1013.50446	-0.7971	-0.00040474	0.94786	0.00048129	0.15076	7.655E-05	507.75980812295666	81.531	0.32648	81.401	81.217	81.543	-0.13075					10	7	2	0	0	0	0.027866	1	10122	10122		54.765	8.8127	1	97672			40705	5741	28054	28107	46130	46130					-0.0017518148089266106
LIFPVLFRESF	11	Unmodified	_LIFPVLFRESF_					0	0	0		ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	ENST00000467500.1_1_6:111678104-111680097:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2342224121094	3	456.595579	1366.76491	0.7544	0.00034446	0.38317	0.00017495	1.1376	0.00051941	456.9297257049295	50.932	0.30143	50.82	50.749	51.051	-0.11163					11	7	2	0	0	0	0.024821	1	5204	5204		9.6461	0	1	87044			40706	14840	28055	28108	46131	46131					0.09619682050811207
LIFQEEALI	9	Unmodified	_LIFQEEALI_					0	0	0			REV__ENSG00000137100|ENST00000259632|DCTN3	REV__ENSG00000137100|ENST00000259632|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3042602539062	2	538.305332	1074.59611	0.28965	0.00015592	-1.1834	-0.00063702	-0.89373	-0.0004811	538.3045680256793	85.822	2.156	85.822	85.457	87.613	0					114	50	4	0	0	0	0.13494	1	10824	10824		102.77	12.404	1	7167900	+		40707	23727	28056	28109	46132	46132					0.06179780417301117
LIFQKRKKRKT	11	Unmodified	_LIFQKRKKRKT_					0	0	0		ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	ENST00000415149.6_1_3:107429416-107435478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2684326171875	3	482.652422	1444.93544	-0.13158	-6.3509E-05	-1.5938	-0.00076923	-1.7253	-0.00083274	482.9864432171328	46.773	0.18267	46.503	46.379	46.561	-0.26939					5	4	2	0	0	0	0.024888	1	4516	4516		3.2113	0.35952	1	36055			40708	13871	28057	28110	46133	46133					0.2307663749288622
LIFRNLLD	8	Unmodified	_LIFRNLLD_					0	0	0			REV__ENSG00000125170|ENST00000340099|DOK4	REV__ENSG00000125170|ENST00000340099|DOK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7840576171875	2	502.300384	1002.58622	-0.082619	-4.1499E-05	-0.26017	-0.00013069	-0.34279	-0.00017219	502.3001275305869	72.797	0.97173	72.532	72.127	73.099	-0.26479					31	22	2	0	0	0	0.027866	1	8504	8504		19.36	0	1	385970	+		40709	22801	28058	28111	46134	46134					0.08502637202559526
LIFRNVELQ	9	Unmodified	_LIFRNVELQ_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7344970703125	2	566.329673	1130.64479	0.68202	0.00038625	-1.325	-0.0007504	-0.64299	-0.00036415	566.3287418282074	59.571	0.50077	59.395	59.24	59.741	-0.1761					18	12	2	0	0	0	0.024506	1	6577	6577		30.504	0	1	143970			40710	752	28059	28112	46135	46135					0.08469693777033172
LIFRSRVCI	9	Unmodified	_LIFRSRVCI_					0	0	0			REV__ENST00000360566.6_1_2:10270282-10270354:+|nuORF	REV__ENST00000360566.6_1_2:10270282-10270354:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8300170898438	2	553.828786	1105.64302	0.04182	2.3161E-05	2.0665	0.0011445	2.1084	0.0011677	553.8296782014007	101.58	0.90076	101.41	101.15	102.05	-0.17178					49	20	4	0	0	0	0.96906	1	12606	12606		26.693	0	1	519240	+		40711	30914	28060	28113	46136	46136					0.09442361487435846
LIFTARDAE	9	Unmodified	_LIFTARDAE_					0	0	0			REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	REV__nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.296875	2	518.277106	1034.53966	0.18666	9.6742E-05	-3.9771	-0.0020612	-3.7904	-0.0019645	518.7770825557484	102.51	0.2692	102.38	102.27	102.54	-0.12931					6	5	2	0	0	0	0.024354	1	12718	12718		23.042	0	1	29100	+		40712	33447	28061	28114	46137	46137					0.023771525806068894
LIFTCINRVE	10	Unmodified	_LIFTCINRVE_					0	0	0			REV__ENST00000529428.5_1_16:30291792-30291867:-|nuORF	REV__ENST00000529428.5_1_16:30291792-30291867:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	605.2429809570312	2	604.328816	1206.64308	-0.40028	-0.0002419	-4.1788	-0.0025254	-4.5791	-0.0027673	604.3255455532832	70.02	0.29184	69.769	69.691	69.983	-0.25063					12	6	2	0	0	0	0.03519	1	8173	8173		31.53	1.2121	1	80927	+		40713	34515	28062	28115	46138	46138					0.0480231669675959
LIFVAGMSSL	10	Unmodified	_LIFVAGMSSL_					0	0	0			REV__ENSG00000166558|ENST00000299709|SLC38A8	REV__ENSG00000166558|ENST00000299709|SLC38A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.8110961914062	2	519.288628	1036.5627	-1.2999	-0.00067505	-0.15671	-8.1378E-05	-1.4567	-0.00075643	519.7908795560409	60.807	0.67404	60.878	60.529	61.203	0.071129					38	17	3	0	0	0	0.03519	1	6900	6900		21.96	0	1	696720	+		40714	26034	28063	28116	46139	46139					0.045884553737323586
LIFVVAIFSPI	11	Unmodified	_LIFVVAIFSPI_					0	0	0			REV__CLEC4D|p.V22F|1|0.21|ENSG00000166527|chr12:8515271-8515271|G/T|missense_variant	REV__CLEC4D|p.V22F|1|0.21|ENSG00000166527|chr12:8515271-8515271|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2108459472656	3	406.921404	1217.74238	-0.012571	-5.1154E-06	0.044004	1.7906E-05	0.031433	1.2791E-05	407.2559086996172	27.257	0.37886	27.015	26.828	27.207	-0.24217					11	8	2	0	0	0	0.024735	1	1507	1507		19.263	0	1	50907	+		40715	19495	28064	28117	46140	46140					0.14222082653213874
LIFYGSILS	9	Unmodified	_LIFYGSILS_					0	0	0		ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.78668212890625	2	506.789318	1011.56408	0.10201	5.1697E-05	-3.7845	-0.0019179	-3.6824	-0.0018662	506.7872835741994	71.172	1.1344	71.183	70.854	71.989	0.010735					57	29	3	0	0	0	0.024436	1	8655	8655		23.042	0	1	1071900			40716	9991	28065	28118	46141	46141					0.058764127341419226
LIFYMEEL	8	Unmodified	_LIFYMEEL_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8075561523438	2	529.267361	1056.52017	-0.32211	-0.00017048	4.2495	0.0022491	3.9274	0.0020786	529.2694775048981	50.324	0.56892	50.173	49.924	50.493	-0.1512					41	16	4	0	0	0	0.027866	1	5193	5193		35.201	0	1	844430			40717	18056	28066	28119	46142	46142					-0.005829397545085158
LIFYMEEL	8	Unmodified	_LIFYMEEL_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8085327148438	2	529.267361	1056.52017	-0.15096	-7.9899E-05	4.1033	0.0021717	3.9523	0.0020918	529.2692941772679	50.001	0.5015	50.082	49.775	50.276	0.080994					37	14	3	0	0	0	0.027866	1	5107	5107		37.028	0	1	1025900			40718	18056	28066	28119	46143	46143					-0.005829397545085158
LIFYPVPV	8	Unmodified	_LIFYPVPV_					0	0	0		ENST00000324093.8_1_3:129275052-129275106:-|nuORF	ENST00000324093.8_1_3:129275052-129275106:-|nuORF	ENST00000324093.8_1_3:129275052-129275106:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.7648620605469	2	474.283672	946.552791	-1.1236	-0.00053289	-2.5373	-0.0012034	-3.6609	-0.0017363	474.2822778306797	91.565	0.68952	91.417	91.14	91.829	-0.1487					24	15	2	0	0	0	0.027866	1	11273	11273		10.185	0	1	172140			40719	12249	28067	28120	46144	46144					0.07737635430657974
LIGCSAYEY	9	Carbamidomethyl (C)	_LIGC(Carbamidomethyl (C))SAYEY_	LIGC(1)SAYEY		LIGC(68)SAYEY		0	1	0		nc|ENSG00000124440|Q9Y2N7-4|HIF3A;ENST00000475432.6_1_19:46800333-46815736:+|nuORF;ENST00000528563.5_1_19:46807167-46825077:+|nuORF;nc|ENSG00000124440|Q9Y2N7-6|HIF3A;nc|ENSG00000124440|Q9Y2N7-7|HIF3A;nc|ENSG00000124440|Q9Y2N7-5|HIF3A;nc|ENSG00000124440|Q9Y2N7-3|HIF3A;ENST00000244302.8_1_19:46800333-46834596:+|nuORF;nc|ENSG00000124440|Q9Y2N7-2|HIF3A;ENSG00000124440|ENST00000377670|HIF3A	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2467041015625	2	538.241875	1074.4692	-1.1984	-0.00064505	4.391	0.0023634	3.1926	0.0017184	538.2442843963282	55.781	0.58214	55.624	55.312	55.894	-0.15655					52	15	5	0	0	0	0.36105	1	6035	6035		68.485	9.7027	1	10777000			40720	4047	28068	28121	46145	46145	48				-0.06505888799370041
LIGCSAYEY	9	Carbamidomethyl (C)	_LIGC(Carbamidomethyl (C))SAYEY_	LIGC(1)SAYEY		LIGC(68)SAYEY		0	1	0		nc|ENSG00000124440|Q9Y2N7-4|HIF3A;ENST00000475432.6_1_19:46800333-46815736:+|nuORF;ENST00000528563.5_1_19:46807167-46825077:+|nuORF;nc|ENSG00000124440|Q9Y2N7-6|HIF3A;nc|ENSG00000124440|Q9Y2N7-7|HIF3A;nc|ENSG00000124440|Q9Y2N7-5|HIF3A;nc|ENSG00000124440|Q9Y2N7-3|HIF3A;ENST00000244302.8_1_19:46800333-46834596:+|nuORF;nc|ENSG00000124440|Q9Y2N7-2|HIF3A;ENSG00000124440|ENST00000377670|HIF3A	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2491455078125	2	538.241875	1074.4692	-1.1153	-0.00060029	1.8624	0.0010024	0.74716	0.00040215	538.2429281519651	56.366	0.31732	56.141	55.99	56.307	-0.2248					12	7	2	0	0	0	0.024262	1	6066	6066		68.485	19.043	1	207030			40721	4047	28068	28121	46146	46146	48				-0.06505888799370041
LIGDLPFVGAV	11	Unmodified	_LIGDLPFVGAV_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.8211669921875	2	550.82115	1099.62775	0.31899	0.00017571	-0.54077	-0.00029787	-0.22178	-0.00012216	550.8207791101496	101.7	1.8078	101.56	100.86	102.66	-0.13156					100	41	4	0	0	0	0.28197	1	12621	12621		90.777	5.6158	1	1315100			40722	5353	28069	28122	46147	46147					0.08191773171211025
LIGEWGGH	8	Unmodified	_LIGEWGGH_					0	0	0			REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2742004394531	2	434.719227	867.423902	-0.45727	-0.00019878	0.6361	0.00027652	0.17883	7.774E-05	434.7192579793483	48.205	0.43814	48.052	47.891	48.329	-0.15301					21	12	2	0	0	0	0.027866	1	4859	4859		28.254	13.59	1	220130	+		40723	22894	28070	28123	46148	46148					-0.015113264795672876
LIGEYRIQAKS	11	Unmodified	_LIGEYRIQAKS_					0	0	0			REV__ENSG00000149657|ENST00000279068|LSM14B	REV__ENSG00000149657|ENST00000279068|LSM14B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	639.3629760742188	2	639.364244	1276.71394	0.083932	5.3663E-05	-1.6378	-0.0010472	-1.5539	-0.00099351	639.3630283090524	109.99	0.45077	110	109.83	110.28	0.0059204					54	19	4	0	0	0	1.013	1	13868	13868		33.922	6.8743	1	2199500	+		40724	24695	28071	28124	46149	46149					0.08664733005957714
LIGEYRIQAKS	11	Unmodified	_LIGEYRIQAKS_					0	0	0			REV__ENSG00000149657|ENST00000279068|LSM14B	REV__ENSG00000149657|ENST00000279068|LSM14B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	639.364244	1276.71394	0.20212	0.00012923	-1.61	-0.0010294	-1.4079	-0.00090017	639.3628708427515	110.2	0.60709	110.05	109.78	110.39	-0.14889	0.055661	-0.00020653	NaN	33.922	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	961470	+		40725	24695	28071	28124							0.08664733005957714
LIGGLLSANL	10	Unmodified	_LIGGLLSANL_					0	0	0			REV__ENSG00000008197|ENST00000008391|TFAP2D	REV__ENSG00000008197|ENST00000008391|TFAP2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7696228027344	2	485.800217	969.585882	-0.82576	-0.00040115	0.176	8.55E-05	-0.64976	-0.00031566	485.80020704092743	35.434	0.54892	35.478	35.192	35.741	0.04406					25	13	2	0	0	0	0.03519	1	2654	2654		17.365	0	1	464120	+		40726	19876	28072	28125	46150	46150					0.09987217482705546
LIGGLLSANL	10	Unmodified	_LIGGLLSANL_					0	0	0			REV__ENSG00000008197|ENST00000008391|TFAP2D	REV__ENSG00000008197|ENST00000008391|TFAP2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2667541503906	2	485.800217	969.585882	0.17697	8.5972E-05	-0.015801	-7.6759E-06	0.16117	7.8296E-05	485.79950175200986	67.89	0.40612	67.657	67.471	67.877	-0.23376					13	9	2	0	0	0	0.03519	1	7859	7859		30.504	1.3541	1	87839	+		40727	19876	28072	28125	46151	46151					0.09987217482705546
LIGHKWVL	8	Unmodified	_LIGHKWVL_					0	0	0			REV__ENSG00000175548|ENST00000308742|ALG10B	REV__ENSG00000175548|ENST00000308742|ALG10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.6461181640625	2	483.300188	964.585822	-0.78851	-0.00038109	-3.5485	-0.001715	-4.337	-0.0020961	483.29839700283213	47.054	0.71904	47.113	46.803	47.522	0.059097					32	19	2	0	0	0	0.027866	1	4606	4606		14.664	0	1	584980	+		40728	26959	28073	28126	46152	46152					0.10211262273367083
LIGICPRNL	9	Unmodified	_LIGICPRNL_					0	0	0		ENST00000534575.1_1_8:61300309-61300393:+|nuORF	ENST00000534575.1_1_8:61300309-61300393:+|nuORF	ENST00000534575.1_1_8:61300309-61300393:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.80389404296875	2	499.794412	997.574271	-0.063489	-3.1731E-05	-3.3585	-0.0016786	-3.422	-0.0017103	499.79255859191824	53.336	0.48622	53.209	52.951	53.437	-0.12705					21	12	2	0	0	0	0.024386	1	5549	5549		25.45	4.9683	1	538020			40729	16333	28074	28127	46153	46153					0.07538697187737853
LIGIPFPN	8	Unmodified	_LIGIPFPN_					0	0	0		ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant;ZBTB7C|p.P321Lfs*18|1|0.58|ENSG00000184828|chr18:48040148-48040148|C/-|frameshift_variant;ENSG00000184828|ENST00000590800|ZBTB7C	ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2481384277344	2	435.757821	869.501089	0.42045	0.00018322	-3.4263	-0.001493	-3.0058	-0.0013098	435.7562620913428	71.173	0.6172	71.183	70.854	71.472	0.010735					25	15	2	0	0	0	0.027866	1	8532	8532		52.299	0	1	312990			40730	38173	28075	28128	46154	46154					0.06111891736748021
LIGISKEI	8	Unmodified	_LIGISKEI_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7747802734375	2	436.776211	871.537869	0.68058	0.00029726	-3.9115	-0.0017084	-3.2309	-0.0014112	436.77442546630624	90.156	2.1751	90.018	89.532	91.707	-0.13824					144	51	5	0	0	0	0.96719	1	11022	11022		42.474	1.9018	1	20832000	+		40731	24084	28076	28129	46155	46155					0.09696143562666748
LIGKLTSLQ	9	Unmodified	_LIGKLTSLQ_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;P4HB-CDK5RAP3|1|fusion;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7740173339844	2	486.808042	971.601532	-0.020098	-9.7839E-06	-0.43692	-0.00021269	-0.45701	-0.00022248	486.80766329127687	27.344	0.71481	27.187	26.93	27.645	-0.15664					35	16	3	0	0	0	0.023655	1	1494	1494		60.118	0	1	551680			40732	2900	28077	28130	46156	46156					0.11459503999765275
LIGKRVSREAA	11	Unmodified	_LIGKRVSREAA_					0	0	0		ENST00000320849.8_1_20:34844201-34844534:+|nuORF	ENST00000320849.8_1_20:34844201-34844534:+|nuORF	ENST00000320849.8_1_20:34844201-34844534:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.5812683105469	3	400.578811	1198.7146	0.72126	0.00028892	3.2445	0.0012997	3.9658	0.0015886	400.9144300015786	110.55	0.3054	110.54	110.34	110.64	-0.011299					16	10	2	0	0	0	1.0408	1	13962	13962		27.644	1.5805	1	752520			40733	12198	28078	28131	46157	46157					0.12319572445676386
LIGLFKIL	8	Unmodified	_LIGLFKIL_					0	0	0		ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.78778076171875	2	458.815139	915.615725	-0.34929	-0.00016026	4.208	0.0019307	3.8587	0.0017704	458.8155348586307	92.246	0.46762	92.246	91.945	92.412	0					15	11	2	0	0	0	0.027866	1	11715	11715		29.842	0	1	89603			40734	65	28079	28132	46158	46158					0.1545420121871075
LIGLHFKIKP	10	Unmodified	_LIGLHFKIKP_					0	0	0		ENST00000544850.5_1_12:10758876-10761762:-|nuORF;nc|ENSG00000162385|P61326-2|MAGOH;ENSG00000162385|ENST00000371470|MAGOH;ENSG00000111196|ENST00000320756|MAGOHB	ENST00000544850.5_1_12:10758876-10761762:-|nuORF	ENST00000544850.5_1_12:10758876-10761762:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.3760986328125	2	583.376426	1164.7383	-0.13284	-7.7494E-05	1.0801	0.0006301	0.94726	0.00055261	583.3768732961844	46.356	0.90649	46.259	45.632	46.539	-0.096653					61	24	4	0	0	0	1.1329	1	4465	4465		27.882	10.517	1	5826800			40735	3090	28080	28133	46159	46159					0.16252037950107479
LIGLLLFR	8	Unmodified	_LIGLLLFR_					0	0	0			REV__ENST00000543095.6_2_14:31872224-31889787:-|nuORF	REV__ENST00000543095.6_2_14:31872224-31889787:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.28778076171875	2	472.818213	943.621873	0.65767	0.00031096	1.7396	0.00082251	2.3973	0.0011335	472.8194075101083	94.147	0.15578	94.147	94.088	94.244	0					6	3	2	0	0	0	0.027866	1	11966	11966		13.775	0	1	56098	+		40736	34799	28081	28134	46160	46160					0.14780719450232027
LIGLLMKTV	9	Unmodified	_LIGLLMKTV_					0	0	0		ENST00000371097.8_1_10:98667427-98667487:+|nuORF	ENST00000371097.8_1_10:98667427-98667487:+|nuORF	ENST00000371097.8_1_10:98667427-98667487:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3009033203125	2	494.317189	986.619824	0.88176	0.00043587	1.1153	0.00055132	1.9971	0.00098719	494.3180522240048	96.133	0.4882	96.135	95.868	96.356	0.0020752					19	11	3	0	0	0	0.024477	1	12202	12202		27.882	0	1	639740			40737	12984	28082	28135	46161	46161					0.12597922650104465
LIGLPDSPL	9	Unmodified	_LIGLPDSPL_					0	0	0			REV__ENST00000325042.2_1_7:22765745-22766153:-|nuORF	REV__ENST00000325042.2_1_7:22765745-22766153:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.76092529296875	2	462.773668	923.532783	-0.3083	-0.00014267	2.9643	0.0013718	2.656	0.0012291	462.774908997227	48.926	0.21812	48.774	48.682	48.9	-0.15277					10	5	3	0	0	0	0.024466	1	4983	4983		25.45	14.585	1	234690	+		40738	30382	28083	28136	46162	46162					0.06795839700043871
LIGLSVYKLN	10	Unmodified	_LIGLSVYKLN_					0	0	0			REV__nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	REV__nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3399047851562	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	1.089	1	12610	12610		34.173	2.6427	1	13153000	+		40739	22364	28084	28137	46163	46163					0.11535748579603933
LIGLVHRGIT	10	Unmodified	_LIGLVHRGIT_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.76416015625	2	539.840208	1077.66586	-0.49432	-0.00026685	0.62699	0.00033848	0.13267	7.1622E-05	539.8403998727057	49.852	0.29868	49.701	49.482	49.781	-0.1512					12	7	2	0	0	0	0.03519	1	5141	5141		44.117	5.3107	1	89156	+		40740	22952	28085	28138	46164	46164					0.13013703876549698
LIGLVLTE	8	Unmodified	_LIGLVLTE_					0	0	0			REV__ENST00000381341.6_1_2:15771139-15771202:+|nuORF	REV__ENST00000381341.6_1_2:15771139-15771202:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.8705749511719	2	429.270761	856.52697	-0.029783	-1.2785E-05	2.3711	0.0010179	2.3414	0.0010051	429.27155528799716	36.931	0.52262	36.712	36.324	36.846	-0.2195					19	12	2	0	0	0	0.027866	1	2933	2933		20.482	2.1574	1	71484	+		40741	31516	28086	28139	46165	46165					0.09296741188359192
LIGNQFLI	8	Unmodified	_LIGNQFLI_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-3|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-3|SERPINA9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.27679443359375	2	459.276378	916.538203	-0.83227	-0.00038224	0.89695	0.00041195	0.064681	2.9706E-05	459.27661263750286	91.365	0.72672	91.365	91.133	91.86	0					45	16	4	0	0	0	0.30995	2	11556	11556;11592		109.7	8.4922	1	1816900	+		40742	36919	28087	28140	46166;46167	46166					0.07659563282516046
LIGNQFLI	8	Unmodified	_LIGNQFLI_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-3|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-3|SERPINA9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2768859863281	2	459.276378	916.538203	0.76491	0.00035131	-0.74122	-0.00034042	0.023693	1.0882E-05	459.2758734035205	91.413	0.76231	91.425	91.114	91.877	0.011276					43	17	4	0	0	0	0.047746	1	11486	11486		185.88	41.903	1	1814200	+		40743	36919	28087	28140	46168	46168					0.07659563282516046
LIGNQFLI	8	Unmodified	_LIGNQFLI_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-3|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-3|SERPINA9	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	459.276378	916.538203	0.76491	0.00035131	-0.74122	-0.00034042	0.023693	1.0882E-05	459.2758734035205	91.413	0.76231	91.425	91.114	91.877	0.011276	0.036235	-0.00089485	NaN	185.88	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1814200	+		40744	36919	28087	28140							0.07659563282516046
LIGQLFQV	8	Unmodified	_LIGQLFQV_					0	0	0		ENST00000261854.9_2_15:51041840-51041912:-|nuORF	ENST00000261854.9_2_15:51041840-51041912:-|nuORF	ENST00000261854.9_2_15:51041840-51041912:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.7709655761719	2	459.276378	916.538203	0.027037	1.2417E-05	2.6434	0.0012141	2.6705	0.0012265	459.27830709945374	102.3	0.41241	102.17	102	102.41	-0.12666					16	9	2	0	0	0	0.027866	1	12738	12738		28.254	0	1	253350			40745	11484	28088	28141	46169	46169					0.07659563282516046
LIGRFFIL	8	Unmodified	_LIGRFFIL_					0	0	0			REV__ENST00000370812.7_2_1:77620221-77620269:-|nuORF	REV__ENST00000370812.7_2_1:77620221-77620269:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2575988769531	2	489.810388	977.606223	0.56077	0.00027467	3.6102	0.0017683	4.171	0.002043	489.81199360883454	105.72	0.36732	105.72	105.52	105.89	0					18	10	2	0	0	0	0.027866	1	13565	13565		37.028	8.7742	1	59430	+		40746	31141	28089	28142	46170	46170					0.11652432933192358
LIGRSPSR	8	Unmodified	_LIGRSPSR_					0	0	0			REV__ENST00000556874.1_1_14:66975812-66976097:-|nuORF	REV__ENST00000556874.1_1_14:66975812-66976097:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.74566650390625	2	443.266876	884.519199	-0.17413	-7.7186E-05	-0.30984	-0.00013734	-0.48397	-0.00021453	443.2663694243932	24.297	0.43069	24.082	23.866	24.296	-0.2151					11	9	2	0	0	0	0.027866	1	1057	1057		18.324	4.5491	1	26998	+		40747	35049	28090	28143	46171	46171					0.07232026711471917
LIGSAAFM	8	Oxidation (M)	_LIGSAAFM(Oxidation (M))_		LIGSAAFM(1)		LIGSAAFM(78)	0	0	1		ENST00000370172.5_1_10:103346904-103348003:-|nuORF	ENST00000370172.5_1_10:103346904-103348003:-|nuORF	ENST00000370172.5_1_10:103346904-103348003:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.22735595703125	2	413.212389	824.410226	-0.50668	-0.00020937	3.6141	0.0014934	3.1075	0.001284	413.21397212874746	36.954	0.19946	36.734	36.647	36.846	-0.2195					6	4	2	0	0	0	0.027866	1	2931	2931		77.944	12.046	1	33238			40748	12948	28091	28144	46172	46172		482			-0.009003203030147233
LIGSEGKALR	10	Unmodified	_LIGSEGKALR_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.8126220703125	2	522.314023	1042.61349	0.080445	4.2018E-05	-0.83262	-0.00043489	-0.75218	-0.00039287	522.3135067720585	22.678	0.65215	22.489	22.281	22.933	-0.18894					23	13	3	0	0	0	0.03519	1	878	878		19.997	0.89325	1	111790	+		40749	23697	28092	28145	46173	46173					0.0938912074293512
LIGSGAFPSKL	11	Unmodified	_LIGSGAFPSKL_					0	0	0			REV__ENST00000234668.6_1_1:85647735-85666124:-|nuORF	REV__ENST00000234668.6_1_1:85647735-85666124:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165283203125	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.9728	1	10895	10895		42.864	1.4377	1	3529900	+		40750	20994	28093	28146	46174	46174					0.08222889028479585
LIGSKKLI	8	Unmodified	_LIGSKKLI_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.52264404296875	2	436.302396	870.590239	-0.31394	-0.00013697	0.47316	0.00020644	0.15922	6.947E-05	436.30242457549	47.795	0.47806	47.698	47.451	47.929	-0.097549					22	12	2	0	0	0	0.027866	1	4703	4703		33.516	6.8227	1	329430			40751	10614	28094	28147	46175	46175					0.14976726696284004
LIGSRKAEV	9	Unmodified	_LIGSRKAEV_					0	0	0			REV__ENST00000515731.1_1_1:161284326-161284476:+|nuORF	REV__ENST00000515731.1_1_1:161284326-161284476:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.77716064453125	2	486.795466	971.57638	0.03734	1.8177E-05	3.9818	0.0019383	4.0191	0.0019565	486.79717348114224	41.219	0.67099	41.219	40.981	41.652	0					27	18	2	0	0	0	0.022756	1	3757	3757		90.777	0	1	367130	+		40752	34207	28095	28148	46176	46176					0.08945449197187827
LIGTFACVCP	10	Unmodified	_LIGTFACVCP_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.25390625	2	512.253731	1022.49291	-0.65531	-0.00033569	-0.94354	-0.00048333	-1.5989	-0.00081902	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.91051	1	5764	5764		53.351	6.585	1	53582000			40753	5560	28096	28149	46177	46177					-0.017437465665466334
LIGTLKQS	8	Unmodified	_LIGTLKQS_					0	0	0			REV__ENST00000449363.1_1_17:13972592-13972670:-|nuORF	REV__ENST00000449363.1_1_17:13972592-13972670:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.23577880859375	2	430.26601	858.517468	-0.73932	-0.0003181	-0.59095	-0.00025427	-1.3303	-0.00057237	430.2650534286382	25.186	0.31075	25.186	25.052	25.363	0					10	7	2	0	0	0	0.027866	1	1188	1188		51.335	0	1	50859	+		40754	32675	28097	28150	46178	46178					0.08254972902852842
LIGTLKQS	8	Unmodified	_LIGTLKQS_					0	0	0			REV__ENST00000449363.1_1_17:13972592-13972670:-|nuORF	REV__ENST00000449363.1_1_17:13972592-13972670:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	430.26601	858.517468	-0.1931	-8.3086E-05	0.43877	0.00018879	0.24566	0.0001057	430.26604458760056	25.518	0.72371	25.292	24.752	25.476	-0.22683	0.082423	0.00076018	NaN	34.173	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182000	+		40755	32675	28097	28150							0.08254972902852842
LIGTLKQS	8	Unmodified	_LIGTLKQS_					0	0	0			REV__ENST00000449363.1_1_17:13972592-13972670:-|nuORF	REV__ENST00000449363.1_1_17:13972592-13972670:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	430.26601	858.517468	0.81669	0.00035139	-0.71276	-0.00030668	0.10393	4.4716E-05	430.2655464233716	25.321	0.5879	25.15	24.777	25.364	-0.17151	-0.059327	-0.00023075	NaN	34.173	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142040	+		40756	32675	28097	28150							0.08254972902852842
LIGVCVYMD	9	Oxidation (M)	_LIGVCVYM(Oxidation (M))D_		LIGVCVYM(1)D		LIGVCVYM(45)D	0	0	1		ENST00000471186.5_1_2:118866008-118866161:+|nuORF	ENST00000471186.5_1_2:118866008-118866161:+|nuORF	ENST00000471186.5_1_2:118866008-118866161:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7431030273438	2	514.743196	1027.47184	-0.69133	-0.00035586	1.3469	0.00069328	0.65553	0.00033743	514.7437199999408	69.976	0.50393	69.988	69.668	70.171	0.012421					28	12	3	0	0	0	0.72268	1	8360	8360		44.531	9.379	1	2358000			40757	14950	28098	28151	46179	46179		514			-0.040797566660558005
LIGVTVHT	8	Unmodified	_LIGVTVHT_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.2277526855469	2	420.252903	838.491253	-1.0686	-0.0004491	1.0241	0.00043039	-0.044502	-1.8702E-05	420.25321872718837	40.708	0.5366	40.478	40.273	40.809	-0.2303					18	14	2	0	0	0	0.027866	1	3532	3532		25.45	6.0902	1	215810			40758	3450	28099	28152	46180	46180					0.06554703731376321
LIHAVENNS	9	Unmodified	_LIHAVENNS_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7608947753906	2	498.759081	995.503609	3.692	0.0018414	1.1673	0.00058218	4.8592	0.0024236	498.7595237184479	16.588	0.44605	16.588	16.461	16.907	0					26	14	3	0	0	0	1.0051	1	83	83		19.36	1.0356	1	241180			40759	13698	28100	28153	46181	46181					0.005676954037539872
LIHEALNAIL	10	Unmodified	_LIHEALNAIL_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.830322265625	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0781	1	11111	11111		35.618	3.6634	1	6583300	+		40760	22500	28101	28154	46182	46182					0.10094577919812764
LIHEFVEY	8	Unmodified	_LIHEFVEY_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2322387695312	2	525.26875	1048.52295	-0.059179	-3.1085E-05	-4.0936	-0.0021502	-4.1528	-0.0021813	525.2668838625435	50.174	0.41856	50.069	49.82	50.238	-0.10558					14	10	2	0	0	0	0.027866	1	5102	5102		20.482	0	1	228570			40761	103	28102	28155	46183	46183					0.0006265169467951637
LIHEMPFLT	9	Unmodified	_LIHEMPFLT_					0	0	0			REV__nc|ENSG00000139278|P48060-2|GLIPR1	REV__nc|ENSG00000139278|P48060-2|GLIPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2821044921875	2	550.794078	1099.5736	-0.23468	-0.00012926	1.9929	0.0010977	1.7582	0.00096843	550.796000866277	61.853	0.55607	61.639	61.416	61.972	-0.21375					31	13	4	0	0	0	0.024436	1	6923	6923		38.806	0	1	1214000	+		40762	36712	28103	28156	46184	46184					0.027798577480098174
LIHERESSI	9	Unmodified	_LIHERESSI_					0	0	0		nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7	nc|ENSG00000079950|O15400-2|STX7	nc|ENSG00000079950|O15400-2|STX7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2957763671875	2	542.293288	1082.57202	3.2511	0.0017631	0.94073	0.00051015	4.1919	0.0022732	542.2936863791565	18.412	1.8912	18.475	18.222	20.113	0.063307					66	38	4	0	0	0	0.94809	1	244	244		29.15	0	1	653300			40763	1679	28104	28157	46185	46185					0.03403939983604687
LIHHIYVIF	9	Unmodified	_LIHHIYVIF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|234|3|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|234|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.8135375976562	2	577.839677	1153.6648	0.34048	0.00019674	-4.3525	-0.002515	-4.012	-0.0023183	577.8370308557858	71.209	0.87109	71.003	70.746	71.618	-0.20613					51	20	4	0	0	0	0.024389	1	8316	8316		29.842	1.9593	1	1021100	+		40764	36292	28105	28158	46186	46186					0.09411489507647275
LIHHPIIT	8	Unmodified	_LIHHPIIT_					0	0	0			REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7666015625	2	472.28982	942.565087	1.3526	0.00063883	-1.6269	-0.00076838	-0.2743	-0.00012955	472.28913887003745	70.883	0.64467	70.883	70.656	71.301	0					26	15	3	0	0	0	0.027866	1	8610	8610		49.211	5.094	1	294370	+		40765	20910	28106	28159	46187	46187					0.09150671893701201
LIHHPIIT	8	Unmodified	_LIHHPIIT_					0	0	0			REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7666931152344	2	472.28982	942.565087	0.45215	0.00021355	-0.23401	-0.00011052	0.21815	0.00010303	472.2896221470759	71.01	0.85061	71.02	70.507	71.358	0.010735					31	20	2	0	0	0	0.027866	1	8553	8553		49.211	2.4444	1	270920	+		40766	20910	28106	28159	46188	46188					0.09150671893701201
LIHIVVVKL	9	Unmodified	_LIHIVVVKL_					0	0	0		ENSG00000173157|ENST00000389420|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;nc|ENSG00000173157|P59510-2|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2991333007812	2	517.360245	1032.70594	-0.022113	-1.144E-05	-2.5793	-0.0013344	-2.6014	-0.0013459	517.3587879312596	67.85	0.11576	67.85	67.792	67.908	0					4	2	2	0	0	0	0.024535	1	8106	8106		18.324	0	1	26776			40767	8345	28107	28160	46189	46189					0.1908925054710835
LIHNDSLLE	9	Unmodified	_LIHNDSLLE_					0	0	0			REV__ENSG00000148795|ENST00000369887|CYP17A1	REV__ENSG00000148795|ENST00000369887|CYP17A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2738647460938	2	527.282389	1052.55022	0.16049	8.4623E-05	2.6966	0.0014219	2.8571	0.0015065	527.2836731444157	92.149	2.4714	92.008	91.704	94.175	-0.14131					95	57	3	0	0	0	0.024319	1	11278	11278		24.519	0	1	436990	+		40768	24635	28108	28161	46190	46190					0.026051352350577872
LIHPVQKPE	9	Unmodified	_LIHPVQKPE_					0	0	0			REV__ENSG00000163755|ENST00000296051|HPS3	REV__ENSG00000163755|ENST00000296051|HPS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8031616210938	2	530.811116	1059.60768	0.22745	0.00012073	3.37	0.0017888	3.5975	0.0019096	530.8128672792723	77.966	2.0259	77.755	77.503	79.529	-0.21087					80	48	2	0	0	0	0.024477	1	9817	9817		35.618	12.576	1	1371300	+		40769	25630	28109	28162	46191	46191					0.0802602223127451
LIHPVQKPE	9	Unmodified	_LIHPVQKPE_					0	0	0			REV__ENSG00000163755|ENST00000296051|HPS3	REV__ENSG00000163755|ENST00000296051|HPS3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.811116	1059.60768	-0.52142	-0.00027677	4.1248	0.0021895	3.6034	0.0019127	530.8132125212978	77.906	1.652	77.921	77.578	79.23	0.015907	0.20789	0.00033112	NaN	42.396	98	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1342100	+		40770	25630	28109	28162							0.0802602223127451
LIHQLEAKD	9	Unmodified	_LIHQLEAKD_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.255126953125	2	533.798206	1065.58186	-0.42453	-0.00022661	-0.85672	-0.00045731	-1.2812	-0.00068393	534.2991241144967	39.288	0.56838	39.062	38.6	39.168	-0.2257					34	15	3	0	0	0	0.024263	1	3241	3241		71.296	4.8664	1	689150			40771	6406	28110	28163	46192	46192					0.051691279890064834
LIHQLEAKD	9	Unmodified	_LIHQLEAKD_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.798206	1065.58186	-0.95705	-0.00051087	-0.22831	-0.00012187	-1.1854	-0.00063274	533.7979832096752	38.912	0.71301	38.814	38.591	39.304	-0.098755	-0.18309	-7.8075E-05	NaN	71.296	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526700			40772	6406	28110	28163							0.051691279890064834
LIHQLTTTV	9	Unmodified	_LIHQLTTTV_					0	0	0			REV__ENSG00000006607|ENST00000264042|FARP2	REV__ENSG00000006607|ENST00000264042|FARP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2689819335938	2	513.303124	1024.5917	0.18611	9.5532E-05	-1.0201	-0.00052362	-0.83398	-0.00042809	513.8038198450952	79.667	0.24926	79.448	79.327	79.577	-0.21923					7	5	2	0	0	0	0.024294	1	9557	9557		55.504	32.462	1	113040	+		40773	19835	28111	28164	46193	46193					0.08038315994349432
LIHSIQLAV	9	Unmodified	_LIHSIQLAV_					0	0	0		nc|ENSG00000173612|Q5T6X5-3|GPRC6A;ENSG00000173612|ENST00000310357|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2978515625	2	497.30821	992.601866	-0.255	-0.00012681	-0.42177	-0.00020975	-0.67677	-0.00033656	497.30776886224874	81.932	0.69833	81.958	81.66	82.358	0.025711					37	16	3	0	0	0	0.17822	1	10148	10148		93.195	4.5526	1	959570			40774	8392	28112	28165	46194	46194					0.10526923719623937
LIHTEPAC	8	Unmodified	_LIHTEPAC_					0	0	0		ENST00000571914.1_1_17:79605115-79605256:+|nuORF	ENST00000571914.1_1_17:79605115-79605256:+|nuORF	ENST00000571914.1_1_17:79605115-79605256:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.231689453125	2	442.220746	882.426938	0.13497	5.9687E-05	-1.9388	-0.00085737	-1.8038	-0.00079769	442.21994454975317	47.376	0.15033	47.107	47.013	47.163	-0.26939					5	3	2	0	0	0	0.027866	1	4618	4618		37.028	8.7742	1	107950			40775	17052	28113	28166	46195	46195					-0.018978194170813367
LIHVKFFR	8	Unmodified	_LIHVKFFR_					0	0	0			REV__RAD54L2|p.T1104Pfs*130|1|0.33|ENSG00000164080|chr3:51657661-51657662|-/ACCAGATGGGTCTACAATCA|frameshift_variant;REV__ENSG00000164080|ENST00000684192|RAD54L2	REV__ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2825317382812	2	530.326737	1058.63892	-0.92755	-0.0004919	2.178	0.001155	1.2504	0.00066313	530.3277268485223	39.889	0.13737	39.912	39.84	39.978	0.023727					5	3	2	0	0	0	0.027866	1	3401	3401		29.842	26.432	1	90828	+		40776	37425;25688	28114	28167	46196	46196					0.11194640056032767
LIHVPPGC	8	Unmodified	_LIHVPPGC_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	417.2393493652344	2	418.228374	834.442194	0.64344	0.00026911	-2.9953	-0.0012527	-2.3518	-0.00098359	418.22703383789246	87.722	1.0622	87.722	87.321	88.383	0					44	25	3	0	0	0	0.027866	1	11049	11049		16.705	0	1	642300			40777	5457	28115	28168	46197	46197					0.018350921707792622
LIHVPPGC	8	Unmodified	_LIHVPPGC_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	417.23944091796875	2	418.228374	834.442194	0.6387	0.00026712	-3.1098	-0.0013006	-2.4711	-0.0010335	418.2270323965819	87.775	1.064	87.74	87.447	88.511	-0.035355					40	25	2	0	0	0	0.027866	1	11032	11032		24.504	7.139	1	590500			40778	5457	28115	28168	46198	46198					0.018350921707792622
LIHVPPGC	8	Unmodified	_LIHVPPGC_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	417.2391357421875	2	418.228374	834.442194	0.95904	0.0004011	-3.2579	-0.0013625	-2.2989	-0.00096145	418.2268669597575	87.788	0.89366	87.807	87.473	88.366	0.018555					38	21	3	0	0	0	0.027866	1	10988	10988		24.504	6.1796	1	649850			40779	5457	28115	28168	46199	46199					0.018350921707792622
LIHVPPGC	8	Unmodified	_LIHVPPGC_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.2392883300781	2	418.228374	834.442194	-0.29862	-0.00012489	-2.2139	-0.00092593	-2.5126	-0.0010508	418.22738243610735	87.94	0.71597	87.761	87.448	88.164	-0.17875					33	17	2	0	0	0	0.027866	1	10701	10701		24.504	7.139	1	486940			40780	5457	28115	28168	46200	46200					0.018350921707792622
LIHVPPGC	8	Unmodified	_LIHVPPGC_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.2394714355469	2	418.228374	834.442194	0.31969	0.0001337	-2.9911	-0.0012509	-2.6714	-0.0011172	418.22707778281534	87.865	0.77497	87.727	87.415	88.19	-0.13744					33	18	2	0	0	0	0.027866	1	10682	10682		16.705	12.72	1	562100			40781	5457	28115	28168	46201	46201					0.018350921707792622
LIHYNTCIL	9	Unmodified	_LIHYNTCIL_					0	0	0			REV__ENSG00000153975|ENST00000368576|ZUP1	REV__ENSG00000153975|ENST00000368576|ZUP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.27490234375	2	545.291702	1088.56885	-0.59938	-0.00032683	-3.0815	-0.0016803	-3.6809	-0.0020072	545.7917724898651	77.812	0.24732	77.812	77.712	77.959	0					8	5	3	0	0	0	0.024436	1	9614	9614		38.806	0	1	75309	+		40782	24923	28116	28169	46202	46202					0.028109736052329026
LIIAAGGGGR	10	Unmodified	_LIIAAGGGGR_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7513122558594	2	442.769252	883.52395	0.37346	0.00016536	2.3033	0.0010198	2.6767	0.0011852	442.76919873875283	24.716	0.50374	24.794	24.501	25.005	0.078344					27	10	4	0	0	0	0.03519	1	1070	1070		24.203	6.8378	1	65347			40783	8108	28117	28170	46203	46203					0.07752910854242145
LIIAFFFW	8	Unmodified	_LIIAFFFW_					0	0	0			REV__ENSG00000135905|ENST00000258390|DOCK10	REV__ENSG00000135905|ENST00000258390|DOCK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7725219726562	2	528.799489	1055.58443	-1.4162	-0.00074887	0.095961	5.0744E-05	-1.3202	-0.00069813	528.7995233703538	28.565	0.49956	28.32	28.121	28.621	-0.24524					23	11	3	0	0	0	0.027866	1	1717	1717		33.493	11.791	1	123960	+		40784	23592	28118	28171	46204	46204					0.058856281846146885
LIICGLGK	8	Unmodified	_LIICGLGK_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.7322998046875	2	408.754224	815.493896	0.14468	5.9137E-05	1.0385	0.00042449	1.1832	0.00048363	408.7564596635865	30.97	0.16986	30.982	30.871	31.041	0.011797					5	3	2	0	0	0	0.027866	1	2012	2012		28.254	6.5519	1	20784			40785	2943	28119	28172	46205	46205					0.07876835864692566
LIICINISI	9	Unmodified	_LIICINISI_					0	0	0		ENSG00000181323|ENST00000323675|SPEM1	ENSG00000181323|ENST00000323675|SPEM1	ENSG00000181323|ENST00000323675|SPEM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.3082580566406	2	501.306821	1000.59909	0.25524	0.00012795	4.0119	0.0020112	4.2671	0.0021391	501.308821008582	103.31	0.75272	103.31	102.9	103.65	-0.0046082					19	11	2	0	0	0	0.90698	1	13171	13171		31.955	1.4512	1	327030			40786	9033	28120	28173	46206	46206					0.09881332270435905
LIICVARLD	9	Unmodified	_LIICVARLD_					0	0	0		ENST00000562760.1_1_8:95651061-95651130:-|nuORF	ENST00000562760.1_1_8:95651061-95651130:-|nuORF	ENST00000562760.1_1_8:95651061-95651130:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.8014221191406	2	508.30207	1014.58959	-0.88652	-0.00045062	0.65647	0.00033369	-0.23005	-0.00011693	508.3023500786697	55.676	1.7745	55.774	54.66	56.435	0.098015					108	39	3	0	0	0	0.43973	1	5995	5995		63.306	9.9548	1	9000800			40787	16849	28121	28174	46207	46207					0.08287563984913504
LIIDIAKKV	9	Unmodified	_LIIDIAKKV_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8229064941406	2	506.841885	1011.66922	-0.74982	-0.00038004	-0.099454	-5.0407E-05	-0.84928	-0.00043045	506.8417071738302	60.548	0.49184	60.294	60.092	60.584	-0.25374					25	11	3	0	0	0	0.023837	1	6723	6723		84.916	8.1414	1	202550	+		40788	21909	28122	28175	46208	46208					0.16384953930560187
LIIEKTINKLT	11	Unmodified	_LIIEKTINKLT_					0	0	0			REV__ENST00000420836.2_1_12:68429859-68429931:+|nuORF	REV__ENST00000420836.2_1_12:68429859-68429931:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	643.4007568359375	2	643.408121	1284.80169	0.35482	0.00022829	-2.7743	-0.001785	-2.4195	-0.0015567	643.4065276479043	104.41	0.52249	104.41	104.14	104.67	-0.0032196					36	12	4	0	0	0	1.013	1	13342	13342		33.922	2.3918	1	413010	+		40789	32170	28123	28176	46209	46209					0.17067933876705865
LIIEQQKF	8	Unmodified	_LIIEQQKF_					0	0	0			REV__ENSG00000122958|ENST00000263559|VPS26A	REV__ENSG00000122958|ENST00000263559|VPS26A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.7635192871094	2	509.800217	1017.58588	-0.17008	-8.6705E-05	1.0769	0.000549	0.90682	0.0004623	509.80117340378354	49.421	0.15125	49.142	49.049	49.201	-0.27977					5	3	2	0	0	0	0.027866	1	4941	4941		52.299	6.3472	1	167460	+		40790	22670	28124	28177	46210	46210					0.07779217482720924
LIIFGFAGSL	10	Unmodified	_LIIFGFAGSL_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.264404296875	2	519.305136	1036.59572	-1.2472	-0.00064768	-3.7254	-0.0019346	-4.9726	-0.0025823	519.3029614074	55.466	0.58971	55.564	55.409	55.999	0.098015					26	15	2	0	0	0	0.03519	1	6121	6121		45.952	25.005	1	815030	+		40791	21107	28125	28178	46211	46211					0.07888405488097305
LIIGNYLV	8	Unmodified	_LIIGNYLV_					0	0	0			REV__ENSG00000164073|ENST00000641686|MFSD8	REV__ENSG00000164073|ENST00000641686|MFSD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.77734375	2	452.778754	903.542954	0.52394	0.00023723	-3.4788	-0.0015751	-2.9548	-0.0013379	452.7770744736323	41.103	1.1868	41.103	40.8	41.987	0					83	33	4	0	0	0	0.98906	1	3675	3675		39.021	1.993	1	4481200	+		40792	25685	28126	28179	46212	46212					0.08732447425279588
LIIGRDGDLW	10	Unmodified	_LIIGRDGDLW_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.7819213867188	2	579.319306	1156.62406	-0.67201	-0.00038931	-3.2959	-0.0019094	-3.9679	-0.0022987	579.3173461443749	36.703	0.50342	36.64	36.362	36.866	-0.063385					29	12	3	0	0	0	0.03519	1	2891	2891		36.447	4.9169	1	264190			40793	8985	28127	28180	46213	46213					0.05201103397371298
LIIGRTIN	8	Unmodified	_LIIGRTIN_					0	0	0		ENSG00000198099|ENST00000265512|ADH4;nc|ENSG00000198099|P08319-2|ADH4	ENSG00000198099|ENST00000265512|ADH4	ENSG00000198099|ENST00000265512|ADH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2744140625	2	450.287277	898.560001	0.4309	0.00019403	4.2743	0.0019247	4.7052	0.0021187	450.28893175470404	92.123	0.35233	92.132	91.875	92.227	0.0094147					14	8	2	0	0	0	0.027866	1	11568	11568		37.159	8.0096	1	385660			40794	10095	28128	28181	46214	46214					0.10666368031093043
LIIGSVAVFGN	11	Unmodified	_LIIGSVAVFGN_					0	0	0			REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3167114257812	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.98904	1	11205	11205		39.253	0	1	11601000	+		40795	23087	28129	28182	46215	46215					0.08222889028479585
LIIGSVAVFGN	11	Unmodified	_LIIGSVAVFGN_					0	0	0			REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3167724609375	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.018	1	11134	11134		32.812	8.2932	1	12792000	+		40796	23087	28129	28182	46216	46216					0.08222889028479585
LIIGSVAVFGN	11	Unmodified	_LIIGSVAVFGN_					0	0	0			REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.316650390625	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0442	1	10839	10839		26.693	1.1189	1	17400000	+		40797	23087	28129	28182	46217	46217					0.08222889028479585
LIIGSVAVFGN	11	Unmodified	_LIIGSVAVFGN_					0	0	0			REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	REV__nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	0.99553	1	10590	10590		37.812	3.8899	1	5204600	+		40798	23087	28129	28182	46218	46218					0.08222889028479585
LIIGTGKII	9	Unmodified	_LIIGTGKII_					0	0	0			REV__ENSG00000215262|ENST00000399881|KCNU1	REV__ENSG00000215262|ENST00000399881|KCNU1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.31549072265625	2	464.315503	926.616454	-0.05163	-2.3972E-05	0.17651	8.1958E-05	0.12488	5.7986E-05	464.3154475859254	61.24	0.6986	61.034	60.81	61.509	-0.20599					37	16	3	0	0	0	0.072054	1	6860	6860		120.62	1.0642	1	1430800	+		40799	28803	28130	28183	46219	46219					0.15020995867757847
LIIGTSLLDD	10	Unmodified	_LIIGTSLLDD_					0	0	0			REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3154296875	2	530.300247	1058.58594	-0.61948	-0.00032851	-3.0813	-0.001634	-3.7008	-0.0019625	530.2969115552759	67.434	0.92673	67.434	66.755	67.682	0					66	22	5	0	0	0	0.03519	1	7969	7969		29.15	15.696	1	643210	+		40800	36498	28131	28184	46220	46220					0.058991726920339715
LIIGTSLLDD	10	Unmodified	_LIIGTSLLDD_					0	0	0			REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.300247	1058.58594	-0.34688	-0.00018395	-5.1814	-0.0027477	-5.5283	-0.0029316	530.2967780869392	67.801	0.91353	67.512	66.872	67.785	-0.28835	0.019031	-0.0004056	NaN	60.972	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462410	+		40801	36498	28131	28184							0.058991726920339715
LIIGTSLLDD	10	Unmodified	_LIIGTSLLDD_					0	0	0			REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.300247	1058.58594	0.0017531	9.2968E-07	-5.6971	-0.0030212	-5.6954	-0.0030202	530.2964522668125	67.51	1.0545	67.534	66.769	67.824	0.023911	0.040365	-0.00095256	NaN	60.972	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650710	+		40802	36498	28131	28184							0.058991726920339715
LIIGWPGEA	9	Unmodified	_LIIGWPGEA_					0	0	0			REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D	REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.8027648925781	2	478.26601	954.517468	-0.36389	-0.00017404	-3.3157	-0.0015858	-3.6796	-0.0017598	478.26410449011433	33.872	0.46048	33.672	33.442	33.902	-0.20019					22	11	3	0	0	0	0.024466	1	2413	2413		7.1934	0	1	332680	+		40803	21906	28132	28185	46221	46221					0.03838972902849491
LIIHNACVVLL	11	Unmodified	_LIIHNACVVLL_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	REV__nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.2470703125	3	403.245893	1206.71585	0.06455	2.6029E-05	2.3639	0.00095323	2.4284	0.00097926	403.246861555348	103.54	1.4225	103.37	102.95	104.38	-0.17034					83	36	4	0	0	0	1.0465	1	12874	12874		26.063	0.9374	1	1393700	+		40804	25657	28133	28186	46222	46222					0.12076070490184065
LIIIGTDVL	9	Unmodified	_LIIIGTDVL_					0	0	0			REV__ENST00000258341.4_1_1:183114505-183114610:+|nuORF	REV__ENST00000258341.4_1_1:183114505-183114610:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7588806152344	2	478.804968	955.595384	0.24359	0.00011663	-1.6103	-0.00077104	-1.3667	-0.0006544	478.8047882935958	33.887	0.27024	33.887	33.662	33.932	0					8	6	2	0	0	0	0.024466	1	2471	2471		25.45	0	1	44085	+		40805	29575	28134	28187	46223	46223					0.11580985768216578
LIIKEKSI	8	Unmodified	_LIIKEKSI_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.31243896484375	2	472.312961	942.611368	-0.30105	-0.00014219	-0.32764	-0.00015475	-0.6287	-0.00029694	472.31270733512713	45.059	0.85072	44.806	44.508	45.359	-0.25252					63	22	5	0	0	0	0.2917	1	4228	4228		115.46	3.8107	1	6277100	+		40806	23384	28135	28188	46224	46224					0.13776692005137647
LIIKEKSI	8	Unmodified	_LIIKEKSI_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.31256103515625	2	472.312961	942.611368	-0.72458	-0.00034223	0.016076	7.5931E-06	-0.70851	-0.00033464	472.3128743993293	45.024	0.82772	44.813	44.554	45.382	-0.21109					55	22	4	0	0	0	0.25873	1	4233	4233		129.68	12.779	1	6372400	+		40807	23384	28135	28188	46225	46225					0.13776692005137647
LIIKHKNQF	9	Unmodified	_LIIKHKNQF_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.7276611328125	2	570.848033	1139.68151	-0.5626	-0.00032116	-0.93685	-0.0005348	-1.4995	-0.00085596	570.8471463744468	51.595	0.2006	51.595	51.501	51.702	0					7	5	2	0	0	0	0.024523	1	5477	5477		21.96	0	1	65820			40808	8414	28136	28189	46226	46226					0.11725990393620123
LIIKPRPRTPD	11	Unmodified	_LIIKPRPRTPD_					0	0	0			REV__nc|ENSG00000154027|Q9Y6K8-3|AK5	REV__nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.21160888671875	3	435.938228	1304.79285	0.7377	0.00032159	-1.512	-0.00065915	-0.77434	-0.00033756	435.9379840269098	43.075	0.47142	43.105	42.795	43.267	0.030823					23	12	3	0	0	0	0.024789	1	3912	3912		15.921	0	1	116170	+		40809	24928	28137	28190	46227	46227					0.15265005030892098
LIILENFI	8	Unmodified	_LIILENFI_					0	0	0		ENST00000231368.9_1_5:96365570-96365711:+|nuORF	ENST00000231368.9_1_5:96365570-96365711:+|nuORF	ENST00000231368.9_1_5:96365570-96365711:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2992248535156	2	487.799686	973.584819	0.25083	0.00012236	-0.067686	-3.3017E-05	0.18315	8.934E-05	487.7990108676507	98.303	0.71362	98.313	97.979	98.693	0.010231					24	16	2	0	0	0	0.027866	1	12498	12498		57.811	0	1	152190			40810	11239	28138	28191	46228	46228					0.09697003113808478
LIILKMDDL	9	Oxidation (M)	_LIILKM(Oxidation (M))DDL_		LIILKM(1)DDL		LIILKM(77)DDL	0	0	1			REV__ENSG00000008853|ENST00000251822|RHOBTB2	REV__ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3157348632812	2	545.314843	1088.61513	-0.43795	-0.00023882	2.7383	0.0014932	2.3003	0.0012544	545.3161053729997	100.43	0.3588	100.26	100.14	100.5	-0.17088					13	9	2	0	0	0	0.29104	1	12471	12471		76.847	11.043	1	164650	+		40811	19886	28139	28192	46229	46229		613			0.07436993716669349
LIILTSYTLI	10	Unmodified	_LIILTSYTLI_					0	0	0		ENSG00000144891|ENST00000349243|AGTR1	ENSG00000144891|ENST00000349243|AGTR1	ENSG00000144891|ENST00000349243|AGTR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.8185424804688	2	575.360108	1148.70566	-0.88155	-0.00050721	2.2534	0.0012965	1.3718	0.00078929	575.361301367238	68.119	0.80519	68.119	67.755	68.56	0					32	20	2	0	0	0	0.03519	1	8201	8201		29.15	10.825	1	183120			40812	5779	28140	28193	46230	46230					0.13725786036616228
LIIPGFHLDAL	11	Unmodified	_LIIPGFHLDAL_					0	0	0		ENST00000488748.1_1_20:60777823-60778294:+|nuORF	ENST00000488748.1_1_20:60777823-60778294:+|nuORF	ENST00000488748.1_1_20:60777823-60778294:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.57196044921875	3	403.572775	1207.69649	0.47636	0.00019225	-2.7507	-0.0011101	-2.2743	-0.00091785	403.5716517356722	42.594	1.719	42.471	42.116	43.834	-0.12299					117	45	4	0	0	0	1.0281	1	3846	3846		30.569	1.0181	1	5393200			40813	15393	28141	28194	46231	46231					0.10095437470931756
LIISAHKKPI	10	Unmodified	_LIISAHKKPI_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000069431|O60706|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3397827148438	2	560.366059	1118.71756	-0.14052	-7.8744E-05	-1.4336	-0.00080333	-1.5741	-0.00088208	560.364965140694	101.14	0.25165	101.14	101.08	101.33	0					9	5	2	0	0	0	0.03519	1	12966	12966		19.997	0	1	127070			40814	1402	28142	28195	46232	46232					0.1629544757045096
LIISCSIILD	10	Unmodified	_LIISCSIILD_					0	0	0			REV__ENST00000354772.8_3_14:23815551-23815695:-|nuORF	REV__ENST00000354772.8_3_14:23815551-23815695:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3164672851562	2	545.314843	1088.61513	-0.34336	-0.00018724	3.4625	0.0018882	3.1192	0.0017009	545.3166020452929	101.61	1.0189	101.43	101.15	102.17	-0.17178					36	23	2	0	0	0	1.1329	1	12612	12612		27.882	0	1	1068300	+		40815	30762	28143	28196	46233	46233					0.07436993716692086
LIISIQVLN	9	Unmodified	_LIISIQVLN_					0	0	0		BPIFB4|p.R480S|1|0.05|ENSG00000186191|chr20:33097658-33097658|G/T|missense_variant	BPIFB4|p.R480S|1|0.05|ENSG00000186191|chr20:33097658-33097658|G/T|missense_variant	BPIFB4|p.R480S|1|0.05|ENSG00000186191|chr20:33097658-33097658|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8236083984375	2	506.823692	1011.63283	-0.28333	-0.0001436	-0.00067305	-3.4112E-07	-0.284	-0.00014394	506.82340434715854	60.236	0.77855	60.236	59.951	60.73	0					48	20	4	0	0	0	0.15366	1	6922	6922		98.629	2.8142	1	3046500			40816	189	28144	28197	46234	46234					0.12748077033859317
LIISLAKNL	9	Unmodified	_LIISLAKNL_					0	0	0			REV__ENSG00000145780|ENST00000274457|FEM1C	REV__ENSG00000145780|ENST00000274457|FEM1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7845153808594	2	492.826235	983.637917	0.16336	8.0507E-05	3.7522	0.0018492	3.9156	0.0019297	492.8282487135536	47.087	0.24747	46.817	46.695	46.943	-0.26939					9	6	2	0	0	0	0.024457	1	4582	4582		29.15	14.485	1	169430	+		40817	24432	28145	28198	46235	46235					0.14544380896461462
LIISMLGPTT	10	Unmodified	_LIISMLGPTT_					0	0	0			REV__ENST00000295756.10_1_3:108549606-108565961:+|nuORF	REV__ENST00000295756.10_1_3:108549606-108565961:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303955078125	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	1.0992	1	10865	10865		32.812	1.2826	1	11993000	+		40818	29983	28146	28199	46236	46236					0.06840724545213561
LIISMLGPTT	10	Unmodified	_LIISMLGPTT_					0	0	0			REV__ENST00000295756.10_1_3:108549606-108565961:+|nuORF	REV__ENST00000295756.10_1_3:108549606-108565961:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3035278320312	2	523.301736	1044.58892	0.82974	0.00043421	2.4108	0.0012616	3.2405	0.0016958	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.089	1	10493	10493		34.173	2.6427	1	3893600	+		40819	29983	28146	28199	46237	46237					0.06840724545213561
LIISSLKML	9	Unmodified	_LIISSLKML_					0	0	0			REV__ENST00000446553.2_1_12:6959577-6960430:-|nuORF	REV__ENST00000446553.2_1_12:6959577-6960430:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.32330322265625	2	509.322471	1016.63039	0.35018	0.00017835	0.21812	0.00011109	0.5683	0.00028945	509.3229459371607	78.47	1.5745	78.278	78.016	79.59	-0.1921					75	37	4	0	0	0	0.25032	1	9701	9701		82.305	2.854	1	3633100	+		40820	32630	28147	28200	46238	46238					0.1227390530456205
LIITHIPKN	9	Unmodified	_LIITHIPKN_					0	0	0			REV__nc|ENSG00000145349|Q13557-11|CAMK2D	REV__nc|ENSG00000145349|Q13557-11|CAMK2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.8267211914062	2	524.829309	1047.64407	-0.67594	-0.00035475	-3.8331	-0.0020117	-4.509	-0.0023665	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	0.80658	2	12488	12488;12500		38.806	9.6566	1	14120000	+		40821	24401	28148	28201	46239;46240	46239					0.12214899127980061
LIITLVFTTV	10	Unmodified	_LIITLVFTTV_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.34033203125	2	560.354825	1118.6951	0.16246	9.1035E-05	3.519	0.0019719	3.6815	0.0020629	560.3561972515225	101.25	0.20725	101.25	101.11	101.31	-0.0054474					6	4	2	0	0	0	0.03519	1	12880	12880		21.96	5.4867	1	104690	+		40822	26468	28149	28202	46241	46241					0.14049803382158643
LIIVFYCVM	9	Unmodified	_LIIVFYCVM_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.3348999023438	2	550.797774	1099.581	0.0099871	5.5009E-06	1.2408	0.00068346	1.2508	0.00068896	551.300328991119	74.711	0.99475	74.436	74.308	75.303	-0.27573					39	23	2	0	0	0	0.024475	1	8800	8800		29.842	0	1	141390	+		40823	24979	28150	28203	46242	46242					0.03518874024075558
LIIVQRQDKLN	11	Unmodified	_LIIVQRQDKLN_					0	0	0		ENSG00000112218|ENST00000229955|GPR63;ENSG00000135973|ENST00000258456|GPR45	ENSG00000112218|ENST00000229955|GPR63;ENSG00000135973|ENST00000258456|GPR45	ENSG00000112218|ENST00000229955|GPR63	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.2745361328125	3	447.273388	1338.79833	0.087689	3.9221E-05	-1.006	-0.00044998	-0.91836	-0.00041076	447.2728452141442	106.24	0.62864	106.24	105.98	106.61	0.00014496					70	21	4	0	0	0	1.0499	1	13564	13564		25.126	2.5644	1	1378200			40824	3184;4963	28151	28204	46243	46243					0.14248683822711428
LIIVVLNII	9	Unmodified	_LIIVVLNII_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.8248596191406	2	505.354628	1008.6947	-1.2379	-0.0006256	3.7851	0.0019128	2.5471	0.0012872	505.3575508889286	79.775	0.46169	79.603	79.484	79.945	-0.17226					11	10	2	0	0	0	0.023254	1	9910	9910		62.978	0	1	46752	+		40825	23222	28152	28205	46244	46244					0.19070428452994292
LIIVWMLY	8	Unmodified	_LIIVWMLY_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2540893554688	2	525.806457	1049.59836	-0.47063	-0.00024746	0.34656	0.00018222	-0.12407	-6.5238E-05	525.8065881052917	38.293	0.26453	38.075	37.988	38.253	-0.21848					9	7	2	0	0	0	0.027866	1	3156	3156		33.493	0	1	177390			40826	18207	28153	28206	46245	46245					0.07554537621399504
LIIYFLLAVI	10	Unmodified	_LIIYFLLAVI_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.383386	1176.75222	-0.57959	-0.0003416	2.3882	0.0014076	1.8086	0.001066	589.3847455741998	93.122	0.39037	92.978	92.743	93.133	-0.1441					10	8	2	0	0	0	0.03519	1	11412	11412		12.959	0	1	17267			40827	7975	28154	28207	46246	46246					0.1709127065857956
LIIYYYSV	8	Unmodified	_LIIYYYSV_					0	0	0			REV__ENSG00000184022|ENST00000642090|OR2T10	REV__ENSG00000184022|ENST00000642090|OR2T10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.748046875	2	517.283869	1032.55318	0.47539	0.00024591	-0.86244	-0.00044613	-0.38705	-0.00020021	517.2833730863832	63.53	0.41862	63.272	63.041	63.46	-0.25824					16	10	2	0	0	0	0.027866	1	7193	7193		46.766	2.6496	1	224300	+		40828	27632	28155	28208	46247	46247					0.03821010359843058
LIKCRLERA	9	Unmodified	_LIKCRLERA_					0	0	0			REV__ENST00000491554.6_1_15:40716399-40727929:+|nuORF	REV__ENST00000491554.6_1_15:40716399-40727929:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.8180541992188	2	551.331693	1100.64883	0.28886	0.00015926	-3.2527	-0.0017933	-2.9638	-0.001634	551.3297504513671	52.792	0.51569	52.534	52.287	52.803	-0.25838					26	12	3	0	0	0	0.024405	1	5467	5467		27.882	3.3631	1	406800	+		40829	33452	28156	28209	46248	46248					0.10253459999103143
LIKDIPTTC	9	Unmodified	_LIKDIPTTC_					0	0	0		RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant	RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2902526855469	2	502.27826	1002.54197	0.21793	0.00010946	-2.3765	-0.0011937	-2.1586	-0.0010842	502.277091474952	86.272	0.43819	86.085	85.859	86.298	-0.18696					15	9	2	0	0	0	0.024457	1	10489	10489		21.96	10.449	1	89504			40830	37836	28157	28210	46249	46249					0.040798649940370524
LIKDLRGTES	10	Unmodified	_LIKDLRGTES_					0	0	0		ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.3224487304688	2	566.322045	1130.62954	0.070965	4.0189E-05	0.26956	0.00015266	0.34052	0.00019285	566.322303110478	105.93	0.62749	105.81	105.51	106.13	-0.12381					61	22	4	0	0	0	0.83673	1	13173	13173		58.23	3.4536	1	622550			40831	1287	28158	28211	46250	46250					0.06944782189157195
LIKEMNKEL	9	Oxidation (M)	_LIKEM(Oxidation (M))NKEL_		LIKEM(1)NKEL		LIKEM(130)NKEL	0	0	1			REV__LZTS2|p.S206Lfs*96|1|0.23|ENSG00000107816|chr10:101003714-101003718|AGTGG/-|frameshift_variant	REV__LZTS2|p.S206Lfs*96|1|0.23|ENSG00000107816|chr10:101003714-101003718|AGTGG/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	567.3129272460938	2	567.315374	1132.6162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.302	1	61.302	60.802	61.802	0								0	0	0	0.017387	1	7090	7090		134.81	17.907	1		+		40832	21689	28159	28212	46251	46251		657			0.055192080855931636
LIKEWGGHQQI	11	Unmodified	_LIKEWGGHQQI_					0	0	0			REV__ENST00000266434.8_1_12:12247552-12251919:+|nuORF	REV__ENST00000266434.8_1_12:12247552-12251919:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.8814392089844	3	436.906816	1307.69862	-0.32082	-0.00014017	-1.6631	-0.00072661	-1.9839	-0.00086678	437.2406051622453	39.565	0.50037	39.401	39.153	39.653	-0.16458					29	12	4	0	0	0	0.022997	1	3335	3335		75.652	0	1	971330	+		40833	22592	28160	28213	46252	46252					0.05707866208763335
LIKFIYNI	8	Unmodified	_LIKFIYNI_					0	0	0		ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A;nc|ENSG00000198925|Q7Z3C6-3|ATG9A	ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant	ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.73388671875	2	512.315503	1022.61645	0.30202	0.00015473	-4.4161	-0.0022624	-4.114	-0.0021077	512.3131075606625	59.106	1.0671	58.924	58.669	59.736	-0.18134					48	26	3	0	0	0	0.027866	1	6524	6524		62.978	8.2138	1	591780			40834	146	28161	28214	46253	46253					0.10604995867754496
LIKFLHKWNVK	11	Unmodified	_LIKFLHKWNVK_					0	0	0			REV__ENST00000234170.9_1_2:37456031-37456130:-|nuORF	REV__ENST00000234170.9_1_2:37456031-37456130:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.96112060546875	3	475.962485	1424.86563	1.484	0.00070634	-4.3479	-0.0020695	-2.8639	-0.0013631	475.9602974187592	63.466	1.2583	63.466	63.126	64.384	0					106	34	5	0	0	0	1.0592	1	7443	7443		22.562	4.7284	1	6733000	+		40835	29423	28162	28215	46254	46254					0.1701875882429249
LIKFNGRV	8	Unmodified	_LIKFNGRV_					0	0	0			REV__ENST00000564945.1_1_15:66621377-66621779:+|nuORF	REV__ENST00000564945.1_1_15:66621377-66621779:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2713623046875	2	473.795269	945.575986	-0.1538	-7.2871E-05	-2.1737	-0.0010299	-2.3275	-0.0011027	473.793991214763	47.994	0.14695	48.061	48.007	48.154	0.066795					5	3	2	0	0	0	0.027866	1	4799	4799		37.028	8.7742	1	35273	+		40836	35263	28163	28216	46255	46255					0.10102074267990702
LIKGGEPLEM	10	Unmodified	_LIKGGEPLEM_					0	0	0		nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.7620849609375	2	543.796817	1085.57908	-1.1408	-0.00062038	-1.2919	-0.00070252	-2.4327	-0.0013229	543.7959061465833	83.746	1.1568	83.655	83.172	84.328	-0.090454					44	26	2	0	0	0	0.03519	1	10500	10500		85.161	30.385	1	110140			40837	18464	28164	28217	46256	46256					0.03971536539825138
LIKGKLTK	8	Unmodified	_LIKGKLTK_					0	0	0		ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7813415527344	2	450.81567	899.616788	0.74124	0.00033416	1.8794	0.00084728	2.6207	0.0011814	450.8165825872907	98.414	0.12373	98.412	98.351	98.474	-0.0020752					4	2	2	0	0	0	0.027866	1	12501	12501		11.511	0	1	26155			40838	9919	28165	28218	46257	46257					0.16296415587601132
LIKGTSLP	8	Unmodified	_LIKGTSLP_					0	0	0			REV__ENSG00000204291|ENST00000375001|COL15A1	REV__ENSG00000204291|ENST00000375001|COL15A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.7618103027344	2	414.763104	827.511654	0.29023	0.00012038	-4.0537	-0.0016813	-3.7634	-0.0015609	414.7613841509049	87.889	2.3301	87.752	87.289	89.619	-0.13744					147	55	6	0	0	0	1.0017	1	10767	10767		37.028	1.8278	1	22642000	+		40839	28586	28166	28219	46258	46258					0.09099874391188223
LIKHGWPEDI	10	Unmodified	_LIKHGWPEDI_					0	0	0		ENSG00000147419|ENST00000356537|CCDC25;ENST00000522915.5_1_8:27610094-27630105:-|nuORF	ENSG00000147419|ENST00000356537|CCDC25	ENSG00000147419|ENST00000356537|CCDC25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.2037048339844	3	403.220513	1206.63971	-1.0602	-0.00042748	-1.8095	-0.00072965	-2.8697	-0.0011571	403.2197677463768	61.096	0.43012	60.842	60.623	61.053	-0.25373					20	10	3	0	0	0	0.03519	1	6777	6777		32.751	17.417	1	180940			40840	5963	28167	28220	46259	46259					0.04465389914435036
LIKILAAS	8	Unmodified	_LIKILAAS_					0	0	0		ENST00000373122.8_1_6:41126504-41129123:-|nuORF;ENSG00000095970|ENST00000373113|TREM2	ENST00000373122.8_1_6:41126504-41129123:-|nuORF	ENST00000373122.8_1_6:41126504-41129123:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.7618408203125	2	414.781296	827.54804	-0.35866	-0.00014877	-2.3609	-0.00097924	-2.7195	-0.001128	414.7801147338311	88.105	0.27316	87.935	87.817	88.09	-0.17053					8	6	2	0	0	0	0.027866	1	10742	10742		26.796	8.4717	1	49024			40841	2043	28168	28221	46260	46260					0.12736751287889092
LIKIVGNP	8	Unmodified	_LIKIVGNP_					0	0	0		ENST00000524234.1_2_8:54745628-54755167:-|nuORF	ENST00000524234.1_2_8:54745628-54755167:-|nuORF	ENST00000524234.1_2_8:54745628-54755167:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.3028259277344	2	427.278921	852.543289	-0.29484	-0.00012598	0.76596	0.00032728	0.47112	0.0002013	427.2792227848682	66.553	0.37688	66.329	66.026	66.403	-0.22374					13	9	2	0	0	0	0.027866	1	7646	7646		12.207	0	1	96498			40842	16057	28169	28222	46261	46261					0.11111867145132237
LIKIWNDP	8	Unmodified	_LIKIWNDP_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.9013671875	2	499.78711	997.559667	-1.282	-0.00064071	-3.4891	-0.0017438	-4.771	-0.0023845	499.785076591924	43.93	0.72321	43.711	43.35	44.073	-0.21939					46	19	4	0	0	0	0.027866	1	4090	4090		40.573	8.6178	1	1376900			40843	5789	28170	28223	46262	46262					0.06078948311210297
LIKKGDLN	8	Unmodified	_LIKKGDLN_					0	0	0			REV__MTHFD1L-RNF216|1|fusion;REV__ENSG00000120254|ENST00000367321|MTHFD1L	REV__MTHFD1L-RNF216|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2240295410156	2	450.779285	899.544017	-0.013747	-6.197E-06	0.37979	0.0001712	0.36604	0.000165	450.77935146710473	23.795	0.53204	23.871	23.604	24.136	0.076239					15	11	2	0	0	0	0.027866	1	937	937		44.117	16.235	1	41264	+		40844	36397;22519	28171	28224	46263	46263					0.09022661794176656
LIKKKGIL	8	Unmodified	_LIKKKGIL_					0	0	0			REV__ENSG00000189127|ENST00000338682|ANKRD34B	REV__ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.78717041015625	2	456.833863	911.653173	-0.18947	-8.6556E-05	0.054059	2.4696E-05	-0.13541	-6.186E-05	456.83377231753366	27.321	0.59036	27.164	26.974	27.564	-0.15664					21	13	2	0	0	0	0.027866	1	1464	1464		40.573	0	1	185070	+		40845	28099	28172	28225	46264	46264					0.19381292484331425
LIKKKGIL	8	Unmodified	_LIKKKGIL_					0	0	0			REV__ENSG00000189127|ENST00000338682|ANKRD34B	REV__ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.833863	911.653173	-0.23207	-0.00010602	0.30915	0.00014123	0.077083	3.5214E-05	456.8338772357891	27.275	0.59556	27.033	26.828	27.423	-0.24217	0.0022343	-9.8048E-06	NaN	31.955	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181680	+		40846	28099	28172	28225							0.19381292484331425
LIKKKGIL	8	Unmodified	_LIKKKGIL_					0	0	0			REV__ENSG00000189127|ENST00000338682|ANKRD34B	REV__ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.833863	911.653173	-0.4783	-0.0002185	0.72118	0.00032946	0.24288	0.00011095	456.8339179365746	27.062	0.50668	26.894	26.723	27.23	-0.16816	-0.13627	0.00036665	NaN	31.955	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131730	+		40847	28099	28172	28225							0.19381292484331425
LIKKKKLF	8	Unmodified	_LIKKKKLF_					0	0	0		ENST00000405334.5_1_2:37334471-37336383:-|nuORF	ENST00000405334.5_1_2:37334471-37336383:-|nuORF	ENST00000405334.5_1_2:37334471-37336383:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2843322753906	2	509.362788	1016.71102	-0.72288	-0.00036821	1.9169	0.00097641	1.194	0.0006082	509.36350269652826	46.488	0.28703	46.286	46.12	46.407	-0.20175					14	7	3	0	0	0	0.027866	1	4485	4485		8.8223	0.59103	1	247880			40848	13715	28173	28226	46265	46265					0.20333554409751287
LIKKTNLA	8	Unmodified	_LIKKTNLA_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.78143310546875	2	450.797478	899.580402	0.38953	0.0001756	-0.43063	-0.00019413	-0.041106	-1.853E-05	450.79952435062177	98.391	0.4141	98.391	98.233	98.647	0					16	9	2	0	0	0	0.027866	1	12560	12560		23.042	4.7181	1	53794			40849	2238;18576;3669	28174	28227	46266	46266					0.12659538690877525
LIKKTNLA	8	Unmodified	_LIKKTNLA_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	450.797478	899.580402	0.73233	0.00033013	-7.781	-0.0035076	-7.0486	-0.0031775	450.79408859001126	98.457	0.58736	98.455	98.182	98.769	-0.0020752	0.031724	-0.0060092	NaN	16.473	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121930			40850	2238;18576;3669	28174	28227							0.12659538690877525
LIKLAIRR	8	Unmodified	_LIKLAIRR_					0	0	0			REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.8468322753906	2	491.847836	981.681119	0.72954	0.00035882	-0.82792	-0.00040721	-0.098376	-4.8386E-05	491.84724326101275	108.47	0.46706	108.32	108	108.46	-0.15438					34	24	3	0	0	0	1.0572	1	13402	13402		28.254	0	1	1199600	+		40851	25188	28175	28228	46267	46267					0.18954615464417657
LIKLIKCFI	9	Unmodified	_LIKLIKCFI_					0	0	0			REV__ENST00000482466.5_1_3:37190523-37216082:-|nuORF	REV__ENST00000482466.5_1_3:37190523-37216082:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.275390625	2	545.856481	1089.69841	-0.47095	-0.00025707	1.8055	0.00098552	1.3345	0.00072845	545.8568151392562	77.612	0.1218	77.612	77.51	77.632	0					4	2	2	0	0	0	0.023181	1	9578	9578		60.972	0	1	29615	+		40852	33485	28176	28229	46268	46268					0.15714774955176836
LIKLKSRMM	9	Unmodified	_LIKLKSRMM_					0	0	0		ENST00000561223.1_1_15:39543043-39544343:+|nuORF	ENST00000561223.1_1_15:39543043-39544343:+|nuORF	ENST00000561223.1_1_15:39543043-39544343:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3402099609375	2	560.340672	1118.66679	0.39378	0.00022065	-1.3378	-0.00074964	-0.94405	-0.00052899	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	0.75397	1	12630	12630		42.396	11.892	1	14365000			40853	16818	28177	28230	46269	46269					0.11220458929597044
LIKLKSVL	8	Unmodified	_LIKLKSVL_					0	0	0			REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.31292724609375	2	457.325871	912.637189	-0.020148	-9.2141E-06	-0.60783	-0.00027798	-0.62798	-0.00028719	457.3268652215373	44.453	0.37533	44.49	44.306	44.681	0.0369					13	10	2	0	0	0	0.027866	1	4211	4211		37.159	1.5408	1	82120	+		40854	22111	28178	28231	46270	46270					0.17737586247415038
LIKLLSRDL	9	Unmodified	_LIKLLSRDL_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1;ENST00000508756.2_1_5:98204705-98207835:-|nuORF	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8004150390625	2	535.850242	1069.68593	-1.0593	-0.00056764	-1.1219	-0.00060118	-2.1812	-0.0011688	535.8495495917268	55.429	0.45048	55.283	55.022	55.472	-0.14609					18	12	2	0	0	0	0.024447	1	5918	5918		32.812	17.948	1	180640			40855	6366	28179	28232	46271	46271					0.15387454816504942
LIKLQEKTF	9	Unmodified	_LIKLQEKTF_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3405151367188	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	0.92825	1	12650	12650		30.504	1.3541	1	13153000	+		40856	24824	28180	28233	46272	46272					0.11535748579581195
LIKLRKMV	8	Unmodified	_LIKLRKMV_					0	0	0		ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27685546875	2	500.838623	999.662692	-0.13706	-6.8644E-05	-2.3668	-0.0011854	-2.5038	-0.001254	500.83808739061436	61.36	0.21609	61.133	60.937	61.153	-0.22663					7	5	2	0	0	0	0.027866	1	7048	7048		21.702	7.927	1	76842			40857	10447	28181	28234	46273	46273					0.1628473749818795
LIKLSGFNKE	10	Unmodified	_LIKLSGFNKE_					0	0	0		ORC6|p.L74F|1|0.13|ENSG00000091651|chr16:46692408-46692408|G/C|missense_variant	ORC6|p.L74F|1|0.13|ENSG00000091651|chr16:46692408-46692408|G/C|missense_variant	ORC6|p.L74F|1|0.13|ENSG00000091651|chr16:46692408-46692408|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.8358154296875	2	574.837331	1147.66011	0.097744	5.6187E-05	-3.6926	-0.0021227	-3.5949	-0.0020665	574.8352416292701	105.92	0.61894	105.8	105.44	106.06	-0.12381					63	21	4	0	0	0	1.1265	1	13200	13200		24.519	0	1	351890			40858	18930	28182	28235	46274	46274					0.09218560574208823
LIKLVGERY	9	Unmodified	_LIKLVGERY_					0	0	0		ENSG00000061794|ENST00000081029|MRPS35;MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant	ENSG00000061794|ENST00000081029|MRPS35	ENSG00000061794|ENST00000081029|MRPS35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2753295898438	2	545.834591	1089.65463	-0.90075	-0.00049166	-1.3198	-0.00072041	-2.2206	-0.0012121	545.8332440344994	77.474	0.4249	77.487	77.231	77.656	0.013504					21	9	3	0	0	0	0.023417	1	9514	9514		58.782	0	1	207170			40859	1246	28183	28236	46275	46275					0.11338881782421595
LIKMLDDAD	9	Unmodified	_LIKMLDDAD_					0	0	0			REV__ENST00000370768.6_1_1:78414343-78414388:-|nuORF	REV__ENST00000370768.6_1_1:78414343-78414388:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2918090820312	2	517.26535	1032.51615	-0.5884	-0.00030436	2.1591	0.0011168	1.5707	0.00081248	517.2662809072249	54.499	0.55874	54.358	54.016	54.575	-0.14134					18	13	2	0	0	0	0.024506	1	5827	5827		23.042	0	1	157980	+		40860	31140	28184	28237	46276	46276					0.0011897075178239902
LIKMTTFLL	9	Unmodified	_LIKMTTFLL_					0	0	0		nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.331787109375	2	540.330296	1078.64604	-0.59897	-0.00032364	3.814	0.0020608	3.215	0.0017372	540.3322744216315	67.386	0.79572	67.409	67.028	67.824	0.023911					50	19	3	0	0	0	0.43973	1	7971	7971		63.306	2.3343	1	1646200			40861	18359	28185	28238	46277	46277					0.1098619182157563
LIKMTTFLL	9	Unmodified	_LIKMTTFLL_					0	0	0		nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	540.330296	1078.64604	-0.62828	-0.00033948	3.8253	0.0020669	3.197	0.0017274	540.332254778646	67.655	0.79381	67.367	66.992	67.785	-0.28834	-0.011548	1.4073E-06	NaN	63.306	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1982800			40862	18359	28185	28238							0.1098619182157563
LIKNGGHE	8	Unmodified	_LIKNGGHE_					0	0	0			REV__ENST00000545186.1_1_6:163483196-163516415:+|nuORF	REV__ENST00000545186.1_1_6:163483196-163516415:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	434.2415771484375	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.516	1	97.379	96.879	97.879	-0.1367								0	0	0	0.81261	1	12057	12057		33.516	6.7195	1		+		40863	22008	28186	28239	46278	46278					0.02244345066196729
LIKPIKDVDIL	11	Unmodified	_LIKPIKDVDIL_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.5924987792969	3	422.939235	1265.79587	0.73498	0.00031085	-0.48381	-0.00020462	0.25117	0.00010623	423.27406024148394	49.865	0.36848	49.684	49.495	49.864	-0.18071					11	9	2	0	0	0	0.024759	1	5050	5050		17.833	0.36513	1	57053			40864	4054	28187	28240	46279	46279					0.17360835365025196
LIKPQSWSA	9	Unmodified	_LIKPQSWSA_					0	0	0		ENST00000300101.2_1_12:57394566-57394620:-|nuORF	ENST00000300101.2_1_12:57394566-57394620:-|nuORF	ENST00000300101.2_1_12:57394566-57394620:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2674560546875	2	515.290017	1028.56548	-0.73313	-0.00037777	-2.6186	-0.0013493	-3.3517	-0.0017271	515.7891257998813	31.21	0.24543	31.279	31.082	31.327	0.068962					6	5	2	0	0	0	0.024436	1	2015	2015		30.504	3.8107	1	31988			40865	11895	28188	28241	46280	46280					0.05234046822897653
LIKPRHTL	8	Unmodified	_LIKPRHTL_					0	0	0			REV__ENST00000601785.5_1_19:51728415-51738809:+|nuORF	REV__ENST00000601785.5_1_19:51728415-51738809:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.3144226074219	2	489.316369	976.618185	-1.0508	-0.00051419	-4.0751	-0.001994	-5.126	-0.0025082	489.3142275858638	94.356	1.1901	94.218	93.834	95.024	-0.13779					78	27	5	0	0	0	1.0574	1	11644	11644		13.775	0.81615	1	1637300	+		40866	21522	28189	28242	46281	46281					0.12894049676367558
LIKPSVVFL	9	Unmodified	_LIKPSVVFL_					0	0	0		ENST00000490952.1_1_3:60522548-60807619:-|nuORF;ENSG00000189283|ENST00000492590|FHIT	ENST00000490952.1_1_3:60522548-60807619:-|nuORF	ENST00000490952.1_1_3:60522548-60807619:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.30572509765625	2	508.331153	1014.64775	-0.38874	-0.00019761	-4.0742	-0.002071	-4.4629	-0.0022686	508.3289680087663	22.128	0.3853	21.926	21.76	22.146	-0.20199					14	7	2	0	0	0	0.024535	1	738	738		25.45	11.675	1	66437			40867	9802	28190	28243	46282	46282					0.141015689018559
LIKPTLASPAP	11	Unmodified	_LIKPTLASPAP_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3438110351562	2	554.342249	1106.66995	-0.030294	-1.6793E-05	3.4836	0.0019311	3.4533	0.0019143	554.344081060851	77.111	2.4502	77.124	76.777	79.228	0.013504					130	58	4	0	0	0	0.51994	1	9494	9494		75.043	12.936	1	6888900	+		40868	20367	28191	28244	46283	46283					0.12087748579619984
LIKRLAEN	8	Unmodified	_LIKRLAEN_					0	0	0			REV__ENSG00000177938|ENST00000317658|CAPZA3	REV__ENSG00000177938|ENST00000317658|CAPZA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2637023925781	2	478.798009	955.581465	-0.43502	-0.00020829	-1.3928	-0.00066686	-1.8278	-0.00087515	478.797794948887	38.427	0.9056	38.345	37.883	38.788	-0.082516					63	24	3	0	0	0	0.027866	1	3261	3261		66.429	20.477	1	1642500	+		40869	27152	28192	28245	46284	46284					0.10189753059796658
LIKRNQFF	8	Unmodified	_LIKRNQFF_					0	0	0			REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2973022460938	2	533.313826	1064.6131	-0.28322	-0.00015105	-1.2966	-0.00069151	-1.5798	-0.00084255	533.3128337365919	61.425	0.49553	61.215	60.924	61.42	-0.21026					17	11	2	0	0	0	0.027866	1	6858	6858		35.201	0	1	162610	+		40870	20552	28193	28246	46285	46285					0.08337745813742004
LIKRRNRFQRE	11	Unmodified	_LIKRRNRFQRE_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-3|RAVER1	REV__nc|ENSG00000161847|Q8IY67-3|RAVER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3236389160156	3	505.970814	1514.89061	-0.71715	-0.00036286	3.2156	0.001627	2.4985	0.0012642	506.3079074753907	79.194	0.37186	79.021	78.944	79.316	-0.17226					12	8	2	0	0	0	0.024809	1	9825	9825		12.433	3.221	1	217870	+		40871	25402	28194	28247	46286	46286					0.15376206679593452
LIKRTEETEF	10	Unmodified	_LIKRTEETEF_					0	0	0			REV__ENSG00000065427|ENST00000302445|KARS1	REV__ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.56219482421875	3	422.562715	1264.66632	-0.037385	-1.5798E-05	1.5109	0.00063846	1.4735	0.00062266	422.5633200376155	17.745	0.25024	17.539	17.414	17.664	-0.20669					6	4	2	0	0	0	0.03519	1	203	203		6.3209	0	1	8956.4	+		40872	20310	28195	28248	46287	46287					0.044570340150812626
LIKRWPPPL	9	Unmodified	_LIKRWPPPL_					0	0	0		nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;ENST00000513190.1_1_3:129233175-129239105:+|nuORF;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122	nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-9|IFT122	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3108520507812	2	560.355494	1118.69644	-1.0757	-0.00060277	-2.7937	-0.0015655	-3.8694	-0.0021682	560.3539801278552	51.375	0.099827	51.462	51.411	51.511	0.087006					4	2	2	0	0	0	0.024517	1	5368	5368		35.201	8.4046	1	101870			40873	7169	28196	28249	46288	46288					0.14183482261591962
LIKSPAEVSL	10	Unmodified	_LIKSPAEVSL_					0	0	0			REV__ENST00000587765.1_1_19:38282860-38283352:+|nuORF	REV__ENST00000587765.1_1_19:38282860-38283352:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.3219604492188	2	528.818607	1055.62266	0.3863	0.00020428	0.12584	6.6546E-05	0.51214	0.00027083	528.8181804285152	82.796	0.86604	82.576	82.26	83.126	-0.22015					44	19	3	0	0	0	1.118	1	9994	9994		30.318	1.1682	1	411660	+		40874	35633	28197	28250	46289	46289					0.09707469308614236
LIKSVPVK	8	Unmodified	_LIKSVPVK_					0	0	0			REV__nc|ENSG00000163939|Q86U86-5|PBRM1;REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	REV__nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.23077392578125	2	442.302396	882.590239	-0.15913	-7.0383E-05	0.52284	0.00023125	0.36371	0.00016087	442.3024664291702	46.584	0.56545	46.487	46.331	46.897	-0.096649					17	15	2	0	0	0	0.027866	1	4560	4560		11.511	0	1	343940	+		40875	25662;32896	28198	28251	46290	46290					0.14424726696279322
LIKSVPVKN	9	Unmodified	_LIKSVPVKN_					0	0	0			REV__nc|ENSG00000163939|Q86U86-5|PBRM1;REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	REV__nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.32342529296875	2	499.32386	996.633166	0.38604	0.00019276	-0.27224	-0.00013593	0.11381	5.6827E-05	499.32367611671106	75.985	1.0941	75.997	75.681	76.775	0.011635					62	27	3	0	0	0	0.35646	1	9266	9266		68.787	5.4806	1	6312300	+		40876	25662;32896	28199	28252	46291	46291					0.1347149675370929
LIKTMESLV	9	Unmodified	_LIKTMESLV_					0	0	0			REV__L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|22|3|sense	REV__L1P4_dup2393|chr10:47974237-47974904:-|2.6457893342176693|0.1836211835218236|3.85|507.0|22|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3133544921875	2	517.301736	1032.58892	0.46036	0.00023815	1.9755	0.0010219	2.4358	0.0012601	517.2996072990587	96.957	1.1515	96.966	96.443	97.594	0.0089111					57	25	3	0	0	0	0.024541	1	12418	12418		18.324	0.95945	1	251970	+		40877	36222	28200	28253	46292	46292					0.07392724545184137
LIKTSKVKL	9	Unmodified	_LIKTSKVKL_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L;ENST00000461562.1_1_10:96121274-96122595:-|nuORF;ENST00000463649.5_1_10:96117838-96122595:-|nuORF	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3128051757812	2	515.35516	1028.69577	0.18395	9.4802E-05	-2.1872	-0.0011272	-2.0033	-0.0010324	515.3542798149517	88.198	0.12869	88.217	88.153	88.281	0.018555					4	2	2	0	0	0	0.024541	1	11044	11044		21.96	12.777	1	18573			40878	8343	28201	28254	46293	46293					0.18256642821893365
LIKVDEFT	8	Unmodified	_LIKVDEFT_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7708740234375	2	482.771126	963.527698	0.6276	0.00030299	-0.4081	-0.00019702	0.2195	0.00010597	482.77070121874584	95.79	0.88801	95.668	95.422	96.31	-0.12251					40	20	3	0	0	0	0.96719	1	11861	11861		42.474	0.078325	1	1178600	+		40879	22245	28202	28255	46294	46294					0.04447535837425676
LIKVDFFPI	9	Unmodified	_LIKVDFFPI_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2755737304688	2	546.328611	1090.64267	-1.2277	-0.00067073	-2.6099	-0.0014259	-3.8376	-0.0020966	546.3270880948899	79.923	0.83839	79.944	79.478	80.316	0.021439					34	19	2	0	0	0	0.024484	1	9800	9800		37.812	11.119	1	2344700	+		40880	28824	28203	28256	46295	46295					0.10097265039235026
LIKVDFFPI	9	Unmodified	_LIKVDFFPI_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.328611	1090.64267	-0.9112	-0.00049781	-2.793	-0.0015259	-3.7042	-0.0020237	546.3269924105039	79.917	0.75849	79.917	79.53	80.289	0	0.14583	0.00030143	NaN	37.812	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2573100	+		40881	28824	28203	28256							0.10097265039235026
LIKVDFFPI	9	Unmodified	_LIKVDFFPI_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.328611	1090.64267	-1.6754	-0.0009153	-2.1519	-0.0011756	-3.8272	-0.0020909	546.3273520874616	80.097	0.88055	79.945	79.504	80.385	-0.15168	0.17429	0.0010019	NaN	37.812	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2514500	+		40882	28824	28203	28256							0.10097265039235026
LIKWAQDIEI	10	Unmodified	_LIKWAQDIEI_					0	0	0			REV__ENST00000527731.1_1_11:31436399-31447922:+|nuORF	REV__ENST00000527731.1_1_11:31436399-31447922:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.8913879394531	3	410.236051	1227.68632	-0.41425	-0.00016994	-1.9081	-0.00078276	-2.3223	-0.0009527	410.2352351093913	28.294	0.55673	28.142	27.885	28.441	-0.15195					24	13	2	0	0	0	0.03519	1	1637	1637		30.569	0	1	170720	+		40883	26521	28204	28257	46296	46296					0.08158829745707408
LILADHHDI	9	Unmodified	_LILADHHDI_					0	0	0		LRP1B|p.E3024D|1|0.3|ENSG00000168702|chr2:140492656-140492656|C/G|missense_variant	LRP1B|p.E3024D|1|0.3|ENSG00000168702|chr2:140492656-140492656|C/G|missense_variant	LRP1B|p.E3024D|1|0.3|ENSG00000168702|chr2:140492656-140492656|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.79541015625	2	523.785099	1045.55564	-0.026947	-1.4114E-05	-0.25199	-0.00013199	-0.27894	-0.0001461	523.7851120546276	68.846	0.54218	68.553	68.211	68.753	-0.29267					22	13	2	0	0	0	0.024466	1	8202	8202		33.516	0	1	104300			40884	17922	28205	28258	46297	46297					0.03468858817495857
LILAIGAFTL	10	Unmodified	_LILAIGAFTL_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3;B3GNT3|p.A59Pfs*50|1|0.45|ENSG00000179913|chr19:17807981-17807993|GGCCCCGTGCCAT/-|frameshift_variant	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3194580078125	2	516.328611	1030.64267	-0.11727	-6.0552E-05	-0.24873	-0.00012843	-0.366	-0.00018898	516.3281638446617	68.048	0.72678	68.048	67.755	68.482	0					43	18	4	0	0	0	0.03519	1	8141	8141		35.618	0.41757	1	1428300			40885	8936	28206	28259	46298	46298					0.1285726503922433
LILAIGAFTL	10	Unmodified	_LILAIGAFTL_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3;B3GNT3|p.A59Pfs*50|1|0.45|ENSG00000179913|chr19:17807981-17807993|GGCCCCGTGCCAT/-|frameshift_variant	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2570190429688	2	516.328611	1030.64267	-0.71531	-0.00036933	-3.1846	-0.0016443	-3.8999	-0.0020136	516.3268116801845	25.518	0.36937	25.292	25.148	25.517	-0.22683					15	8	2	0	0	0	0.03519	1	1201	1201		30.504	7.4612	1	100920			40886	8936	28206	28259	46299	46299					0.1285726503922433
LILARDILE	9	Unmodified	_LILARDILE_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.3255615234375	2	528.326599	1054.63865	-0.93883	-0.00049601	-1.8288	-0.00096621	-2.7676	-0.0014622	528.3255368621127	28.297	0.95946	28.128	27.768	28.727	-0.16897					48	22	4	0	0	0	0.96322	1	1633	1633		27.882	4.8398	1	781910			40887	2073	28207	28260	46300	46300					0.11351175545519254
LILARDILE	9	Unmodified	_LILARDILE_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.326599	1054.63865	-1.2375	-0.0006538	-1.6892	-0.00089243	-2.9267	-0.0015462	528.3256469078843	28.437	0.78276	28.192	27.882	28.665	-0.24524	0.010315	0.00013136	NaN	27.882	41	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	946610			40888	2073	28207	28260							0.11351175545519254
LILARDILE	9	Unmodified	_LILARDILE_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.326599	1054.63865	-0.46383	-0.00024506	-2.1613	-0.0011419	-2.6251	-0.0013869	528.3253450249675	28.377	0.94889	28.225	27.961	28.91	-0.15195	0.043252	-0.00036751	NaN	27.882	45	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1063500			40889	2073	28207	28260							0.11351175545519254
LILASIFSISV	11	Unmodified	_LILASIFSISV_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|220|1|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|220|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.81640625	2	581.857732	1161.70091	-1.8466	-0.0010745	2.6059	0.0015162	0.75923	0.00044177	581.8590980237358	65.085	0.77094	64.883	64.577	65.348	-0.20254					42	18	3	0	0	0	0.024811	1	7447	7447		64.207	7.4862	1	575660	+		40890	36268	28208	28261	46301	46301					0.1265290189382995
LILCGNPL	8	Carbamidomethyl (C)	_LILC(Carbamidomethyl (C))GNPL_	LILC(1)GNPL		LILC(78)GNPL		0	1	0		ENST00000392562.5_1_17:73400926-73401187:-|nuORF	ENST00000392562.5_1_17:73400926-73401187:-|nuORF	ENST00000392562.5_1_17:73400926-73401187:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7789306640625	2	450.254588	898.494624	-0.16194	-7.2915E-05	1.3581	0.00061147	1.1961	0.00053856	450.25518398774466	30.553	0.2867	30.309	30.163	30.45	-0.24415					9	6	2	0	0	0	0.027866	1	1973	1973		77.944	27.919	1	77869			40891	13420	28209	28262	46302	46302	182				0.04131630513734308
LILCHLLLP	9	Unmodified	_LILCHLLLP_					0	0	0		ENST00000433473.7_1_1:40539496-40539580:-|nuORF	ENST00000433473.7_1_1:40539496-40539580:-|nuORF	ENST00000433473.7_1_1:40539496-40539580:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.8271484375	2	517.825181	1033.63581	-0.39319	-0.00020361	3.9273	0.0020337	3.5341	0.00183	517.8270991961155	34.968	0.93539	34.781	34.479	35.415	-0.18675					65	23	4	0	0	0	0.65391	1	2629	2629		49.211	19.369	1	2489500			40892	14226	28210	28263	46303	46303					0.12033628887002124
LILDILCFI	9	Unmodified	_LILDILCFI_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|295|2|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|295|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8170166015625	2	531.817021	1061.61949	0.061557	3.2737E-05	0.095532	5.0806E-05	0.15709	8.3543E-05	531.8169861653995	99.962	0.63961	99.956	99.608	100.25	-0.0050888					34	17	3	0	0	0	0.75282	1	12702	12702		42.474	8.3019	1	1034500	+		40893	36271	28211	28264	46304	46304					0.09114502930265189
LILDTELLK	9	Unmodified	_LILDTELLK_					0	0	0			REV__ENST00000338728.9_1_6:117870548-117870578:+|nuORF	REV__ENST00000338728.9_1_6:117870548-117870578:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8074340820312	2	529.328808	1056.64306	-0.38436	-0.00020345	-1.6606	-0.00087901	-2.045	-0.0010825	529.3275777034072	49.617	0.33808	49.466	49.22	49.558	-0.1512					11	8	2	0	0	0	0.023817	1	5105	5105		82.305	7.2617	1	51307	+		40894	30593	28212	28265	46305	46305					0.11700639968398718
LILDTELLK	9	Unmodified	_LILDTELLK_					0	0	0			REV__ENST00000338728.9_1_6:117870548-117870578:+|nuORF	REV__ENST00000338728.9_1_6:117870548-117870578:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.328808	1056.64306	-0.11674	-6.1793E-05	-0.47765	-0.00025283	-0.59439	-0.00031463	529.8305174494892	49.358	0.18636	49.358	49.287	49.473	0	-0.065579	0.00039773	NaN	82.305	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51764	+		40895	30593	28212	28265							0.11700639968398718
LILDTELLK	9	Unmodified	_LILDTELLK_					0	0	0			REV__ENST00000338728.9_1_6:117870548-117870578:+|nuORF	REV__ENST00000338728.9_1_6:117870548-117870578:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.328808	1056.64306	-1.5292	-0.00080944	-0.19899	-0.00010533	-1.7282	-0.00091478	529.8307696211684	49.372	0.36925	49.446	49.096	49.465	0.074196	0.022949	0.00069273	NaN	82.305	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66421	+		40896	30593	28212	28265							0.11700639968398718
LILEKPQW	8	Unmodified	_LILEKPQW_					0	0	0			REV__chr2:68046043-68047173|108|12.34|0.77|4.01|-|0|C1D,C1D|1	REV__chr2:68046043-68047173|108|12.34|0.77|4.01|-|0|C1D,C1D|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2853393554688	2	513.80276	1025.59097	-0.87826	-0.00045125	-1.8411	-0.00094595	-2.7193	-0.0013972	513.8017646333872	61.915	0.34719	61.737	61.576	61.923	-0.17781					13	8	2	0	0	0	0.027866	1	6960	6960		19.36	0	1	91789	+		40897	19418	28213	28266	46306	46306					0.0791952134532039
LILENQQEA	9	Unmodified	_LILENQQEA_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3109741210938	2	529.279846	1056.54514	-0.87295	-0.00046204	-2.8914	-0.0015303	-3.7643	-0.0019924	529.2775974719901	57.228	0.40926	57.228	56.936	57.345	0					22	10	3	0	0	0	0.023454	1	6398	6398		82.241	5.4664	1	488930	+		40898	26456	28214	28267	46307	46307					0.019128313724195323
LILFELLY	8	Unmodified	_LILFELLY_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2952270507812	2	512.309887	1022.60522	-1.4544	-0.00074511	-2.8631	-0.0014668	-4.3176	-0.0022119	512.3082809011185	65.449	0.45095	65.236	65.012	65.463	-0.21327					15	10	2	0	0	0	0.027866	1	7496	7496		37.028	0	1	209480			40899	689	28215	28268	46308	46308					0.09482173773619706
LILFYTIFFTL	11	Unmodified	_LILFYTIFFTL_					0	0	0			REV__ENST00000520586.5_1_5:170570427-170610199:+|nuORF	REV__ENST00000520586.5_1_5:170570427-170610199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.75531005859375	3	464.272214	1389.79481	0.54948	0.00025511	-0.42965	-0.00019948	0.11982	5.563E-05	464.27208230332263	19.088	0.24643	18.885	18.708	18.954	-0.20371					6	4	2	0	0	0	0.024821	1	363	363		19.263	0	1	16632	+		40900	34298	28216	28269	46309	46309					0.11550620996104044
LILGEELL	8	Unmodified	_LILGEELL_					0	0	0			REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2746887207031	2	450.276044	898.537535	-0.35559	-0.00016011	-3.7038	-0.0016678	-4.0594	-0.0018279	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	1.0572	1	11751	11751		28.254	0	1	67958000	+		40901	34885	28217	28270	46310	46310					0.08420723842812095
LILGLEPT	8	Unmodified	_LILGLEPT_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2618408203125	2	428.262936	854.51132	0.60688	0.0002599	-3.4974	-0.0014978	-2.8905	-0.0012379	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.0572	1	11064	11064		28.254	1.4582	1	63872000	+		40902	21321	28218	28271	46311	46311					0.0782445467133357
LILGNPASA	9	Unmodified	_LILGNPASA_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2619934082031	2	428.25036	854.486168	-0.8406	-0.00035999	-2.1719	-0.00093013	-3.0125	-0.0012901	428.25040834598224	90.068	0.73817	90.068	89.731	90.469	0					33	17	3	0	0	0	0.024021	1	11434	11434		40.778	3.6191	1	441900			40903	1238	28219	28272	46312	46312					0.053103998687561216
LILGPHESKI	10	Unmodified	_LILGPHESKI_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.832049	1105.64954	0.28505	0.00015787	-4.1617	-0.0023049	-3.8767	-0.002147	553.8296167290418	101.48	0.89046	101.36	101.07	101.96	-0.12576					50	21	4	0	0	0	1.1307	1	12617	12617		26.693	2.4902	1	571900			40904	2562	28220	28273	46313	46313					0.10094577919812764
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2584533691406	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	0.72494	1	13502	13502		44.377	3.8046	1	6618800	+		40905	26324	28221	28274	46314	46314					0.012100613149982564
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2580261230469	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.85329	2	13384	13384;13412		35.618	5.3006	1	7056700	+		40906	26324	28221	28274	46315;46316	46315					0.012100613149982564
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2581481933594	2	490.258382	978.502212	-0.31257	-0.00015324	-0.53928	-0.00026439	-0.85186	-0.00041763	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	0.96322	1	13079	13079		27.882	3.6795	1	4889800	+		40907	26324	28221	28274	46317	46317					0.012100613149982564
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2573547363281	2	490.258382	978.502212	-0.68729	-0.00033695	-0.25279	-0.00012393	-0.94008	-0.00046088	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	0.85329	1	13167	13167		35.618	0.41757	1	5001000	+		40908	26324	28221	28274	46318	46318					0.012100613149982564
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2587585449219	2	490.258382	978.502212	0.17838	8.7454E-05	4.2192	0.0020685	4.3976	0.002156	490.2619605390136	98.339	1.7967	98.174	98	99.797	-0.1652					76	43	3	0	0	0	0.50848	1	12189	12189		58.782	12.83	1	167280	+		40909	26324	28221	28274	46319	46319					0.012100613149982564
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	490.258382	978.502212	0.27285	0.00013377	4.5371	0.0022244	4.81	0.0023581	490.26218095532454	98.363	1.8607	98.226	97.927	99.787	-0.13625	-0.025882	0.0038578	NaN	58.782	85	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161930	+		40910	26324	28221	28274							0.012100613149982564
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	490.258382	978.502212	1.2884	0.00063167	-1.0687	-0.00052392	0.21979	0.00010776	490.2582004580761	98.481	1.1238	98.357	97.988	99.112	-0.12414	0.10445	-0.0016388	NaN	58.782	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174820	+		40911	26324	28221	28274							0.012100613149982564
LILGQFSSD	9	Unmodified	_LILGQFSSD_					0	0	0			REV__ENSG00000169131|ENST00000335815|ZNF354A	REV__ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	490.258382	978.502212	0.17838	8.7454E-05	4.2192	0.0020685	4.3976	0.002156	490.2619605390136	98.339	1.7967	98.174	98	99.797	-0.1652	-0.078572	0.0035461	NaN	58.782	76	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167280	+		40912	26324	28221	28274							0.012100613149982564
LILGTQLSQV	10	Unmodified	_LILGTQLSQV_					0	0	0			REV__ENST00000497815.5_1_7:101459310-101755188:+|nuORF	REV__ENST00000497815.5_1_7:101459310-101755188:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7075805664062	2	536.324057	1070.63356	-0.11158	-5.9845E-05	-0.52199	-0.00027996	-0.63358	-0.0003398	536.3236184257366	56.998	0.57838	56.796	56.557	57.136	-0.20209					32	15	3	0	0	0	0.03519	1	6189	6189		30.318	0	1	751360	+		40913	33860	28222	28275	46320	46320					0.10106871682887686
LILGTQLSQV	10	Unmodified	_LILGTQLSQV_					0	0	0			REV__ENST00000497815.5_1_7:101459310-101755188:+|nuORF	REV__ENST00000497815.5_1_7:101459310-101755188:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7072143554688	2	536.324057	1070.63356	-0.52795	-0.00028315	-0.00058294	-3.1264E-07	-0.52853	-0.00028346	536.323814176459	57.069	0.55159	56.844	56.621	57.173	-0.22479					32	14	3	0	0	0	0.03519	1	6197	6197		65.465	7.2191	1	672890	+		40914	33860	28222	28275	46321	46321					0.10106871682887686
LILGVAINFK	10	Unmodified	_LILGVAINFK_					0	0	0			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3469848632812	2	544.347335	1086.68012	0.035767	1.947E-05	-0.17223	-9.375E-05	-0.13646	-7.428E-05	544.3471106564123	78.67	1.2238	78.439	78.091	79.315	-0.23141					76	28	5	0	0	0	0.9856	1	9385	9385		47.916	5.5195	1	2889500	+		40915	19711	28223	28276	46322	46322					0.14024356304844332
LILGVAINFK	10	Unmodified	_LILGVAINFK_					0	0	0			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3473510742188	2	544.347335	1086.68012	-0.50632	-0.00027562	0.23061	0.00012553	-0.27571	-0.00015008	544.3473901389589	78.575	1.272	78.419	78.043	79.315	-0.15591					69	29	4	0	0	0	1.0004	1	9378	9378		45.952	3.5558	1	2709600	+		40916	19711	28223	28276	46323	46323					0.14024356304844332
LILGVREQREP	11	Unmodified	_LILGVREQREP_					0	0	0		nc|ENSG00000168389|Q8NA29-3|MFSD2A;ENST00000491515.5_1_1:40432335-40433413:+|nuORF;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.2571105957031	3	437.257738	1308.75138	0.14146	6.1854E-05	-0.92656	-0.00040514	-0.7851	-0.00034329	437.25730148495717	97.255	3.51	97.255	96.194	99.704	0					235	80	4	0	0	0	1.0471	1	12440	12440		25.892	0	1	1246800			40917	18493	28224	28277	46324	46324					0.10935824271541605
LILGVREQREP	11	Unmodified	_LILGVREQREP_					0	0	0		nc|ENSG00000168389|Q8NA29-3|MFSD2A;ENST00000491515.5_1_1:40432335-40433413:+|nuORF;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.25701904296875	3	437.257738	1308.75138	0.65097	0.00028464	-1.4641	-0.00064018	-0.81311	-0.00035554	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	0.95911	1	12411	12411		45.908	10.756	1	1147200			40918	18493	28224	28277	46325	46325					0.10935824271541605
LILGVREQREP	11	Unmodified	_LILGVREQREP_					0	0	0		nc|ENSG00000168389|Q8NA29-3|MFSD2A;ENST00000491515.5_1_1:40432335-40433413:+|nuORF;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.257080078125	3	437.257738	1308.75138	0.70758	0.0003094	-1.6013	-0.00070019	-0.89375	-0.0003908	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	0.99147	2	12020	12020;12129		38.714	4.4627	1	1350500			40919	18493	28224	28277	46326;46327	46326					0.10935824271541605
LILGVREQREP	11	Unmodified	_LILGVREQREP_					0	0	0		nc|ENSG00000168389|Q8NA29-3|MFSD2A;ENST00000491515.5_1_1:40432335-40433413:+|nuORF;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2572021484375	3	437.257738	1308.75138	1.0571	0.00046224	-1.8864	-0.00082483	-0.82923	-0.00036259	437.25688759784646	97.353	2.9903	97.23	96.187	99.177	-0.12368					226	70	5	0	0	0	0.9703	3	12149	12062;12100;12149		43.419	14.248	1	1091400			40920	18493	28224	28277	46328;46329;46330	46330					0.10935824271541605
LILGVREQREP	11	Unmodified	_LILGVREQREP_					0	0	0		nc|ENSG00000168389|Q8NA29-3|MFSD2A;ENST00000491515.5_1_1:40432335-40433413:+|nuORF;ENST00000483824.5_1_1:40420832-40434017:+|nuORF;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.25726318359375	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	1.017	1	12054	12054		33.039	2.4705	1	1104700			40921	18493	28224	28277	46331	46331					0.10935824271541605
LILGWIFV	8	Unmodified	_LILGWIFV_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.8001403808594	2	480.799489	959.584425	0.37808	0.00018178	1.9639	0.00094425	2.342	0.001126	480.80031956512425	94.257	2.0083	94.257	93.77	95.778	0					166	47	6	0	0	0	1.0241	3	11957	11957;12003;12015		33.493	1.5381	1	23477000			40922	2146	28225	28278	46332;46333;46334	46332					0.1030162818460667
LILGWIFV	8	Unmodified	_LILGWIFV_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.801025390625	2	480.799489	959.584425	-0.63881	-0.00030714	3.0038	0.0014442	2.365	0.0011371	480.80082202255966	94.22	2.2256	94.226	93.689	95.914	0.0059814					161	52	5	0	0	0	1.0241	1	11945	11945		33.493	0	1	22094000			40923	2146	28225	28278	46335	46335					0.1030162818460667
LILGWIFV	8	Unmodified	_LILGWIFV_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.80078125	2	480.799489	959.584425	-0.2816	-0.00013539	2.6293	0.0012641	2.3477	0.0011288	480.8006558847944	94.33	2.1067	94.192	93.703	95.809	-0.13779					175	48	6	0	0	0	1.0241	2	11629	11629;11653		33.493	0	1	20329000			40924	2146	28225	28278	46336;46337	46336					0.1030162818460667
LILGWIFV	8	Unmodified	_LILGWIFV_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.8008117675781	2	480.799489	959.584425	0.25492	0.00012256	2.2284	0.0010714	2.4833	0.001194	480.8004656046571	94.354	2.1881	94.232	93.711	95.899	-0.12215					167	50	6	0	0	0	1.0241	2	11631	11631;11643		33.493	0	1	16484000			40925	2146	28225	28278	46338;46339	46338					0.1030162818460667
LILHHTET	8	Unmodified	_LILHHTET_					0	0	0		ENST00000414993.1_1_1:21106987-21112762:-|nuORF;ENST00000417710.5_1_1:21106987-21112698:-|nuORF;ENST00000438032.5_1_1:21106987-21113725:-|nuORF	ENST00000414993.1_1_1:21106987-21112762:-|nuORF	ENST00000414993.1_1_1:21106987-21112762:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.8055419921875	2	482.266542	962.51853	0.0054408	2.6239E-06	0.66395	0.0003202	0.6694	0.00032283	482.2666648020872	53.204	0.60734	53.204	52.974	53.582	0					23	16	2	0	0	0	0.027866	1	5801	5801		35.201	0	1	149800			40926	13869	28226	28279	46340	46340					0.03577187271753246
LILHLKLMKLL	11	Unmodified	_LILHLKLMKLL_					0	0	0		ENST00000575041.5_1_16:11864830-11868126:-|nuORF	ENST00000575041.5_1_16:11864830-11868126:-|nuORF	ENST00000575041.5_1_16:11864830-11868126:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.635986328125	3	445.636721	1333.88834	0.21536	9.5974E-05	-1.8166	-0.00080954	-1.6012	-0.00071357	445.6358142382711	40.084	1.9182	40.084	39.733	41.652	0					203	53	5	0	0	0	1.1135	1	3502	3502		6.3209	0.6221	1	6583600			40927	17094	28227	28280	46341	46341					0.2347464189758739
LILHLKLMKLL	11	Unmodified	_LILHLKLMKLL_					0	0	0		ENST00000575041.5_1_16:11864830-11868126:-|nuORF	ENST00000575041.5_1_16:11864830-11868126:-|nuORF	ENST00000575041.5_1_16:11864830-11868126:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	445.6358947753906	3	445.636721	1333.88834	-0.41799	-0.00018627	-1.1856	-0.00052834	-1.6036	-0.00071461	445.63608809011873	40.543	1.8033	40.566	40.051	41.854	0.023006					203	50	5	0	0	0	1.1045	1	3481	3481		10.104	0.45776	1	7582000			40928	17094	28227	28280	46342	46342					0.2347464189758739
LILIAGLLW	9	Unmodified	_LILIAGLLW_					0	0	0			REV__IL19|p.T13A|1|0.24|ENSG00000142224|chr1:206836699-206836699|A/G|missense_variant	REV__IL19|p.T13A|1|0.24|ENSG00000142224|chr1:206836699-206836699|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7518005371094	2	506.333696	1010.65284	-0.37873	-0.00019176	-3.8364	-0.0019425	-4.2151	-0.0021342	506.33154863446936	67.594	0.38467	67.355	67.245	67.629	-0.23814					12	8	2	0	0	0	0.023868	1	7793	7793		49.211	4.6797	1	146650	+		40929	36149	28228	28281	46343	46343					0.14793872764482785
LILIDFTCLNI	11	Unmodified	_LILIDFTCLNI_					0	0	0			REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	REV__ENST00000356884.10_1_9:95475360-95475549:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	639.3629150390625	2	639.362324	1276.7101	-1.3694	-0.00087557	2.8196	0.0018027	1.4501	0.00092715	639.3639435468325	110.2	0.52441	110.06	109.85	110.37	-0.13983					60	20	4	0	0	0	1.0844	1	13521	13521		15.642	0.77694	1	470490	+		40930	30804	28229	28282	46344	46344					0.08280927187888665
LILIFTFF	8	Unmodified	_LILIFTFF_					0	0	0			REV__ENST00000338222.6_1_X:56592195-56592459:+|nuORF	REV__ENST00000338222.6_1_X:56592195-56592459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7825012207031	2	507.307147	1012.59974	-0.43778	-0.00022209	3.6997	0.0018769	3.2619	0.0016548	507.30861459535066	41.586	0.92576	41.359	40.847	41.773	-0.2278					48	23	3	0	0	0	0.027866	1	3733	3733		25.45	0	1	1277800	+		40931	30577	28230	28283	46345	46345					0.09394494981791013
LILIIHDSN	9	Unmodified	_LILIIHDSN_					0	0	0			REV__ENSG00000174123|ENST00000308973|TLR10	REV__ENSG00000174123|ENST00000308973|TLR10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.3243408203125	2	519.303124	1036.5917	-0.26757	-0.00013895	-0.039911	-2.0726E-05	-0.30748	-0.00015968	519.3030094468611	40.899	0.66949	40.899	40.657	41.326	0					36	18	3	0	0	0	0.024386	1	3647	3647		18.324	7.4589	1	842270	+		40932	26833	28231	28284	46346	46346					0.07486315994378856
LILIIHDSN	9	Unmodified	_LILIIHDSN_					0	0	0			REV__ENSG00000174123|ENST00000308973|TLR10	REV__ENSG00000174123|ENST00000308973|TLR10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.303124	1036.5917	-0.58459	-0.00030358	0.12152	6.3104E-05	-0.46307	-0.00024047	519.3031021320771	40.962	0.69701	40.827	40.597	41.294	-0.13553	-0.12807	0.00023464	NaN	25.45	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729270	+		40933	26833	28231	28284							0.07486315994378856
LILIIHDSN	9	Unmodified	_LILIIHDSN_					0	0	0			REV__ENSG00000174123|ENST00000308973|TLR10	REV__ENSG00000174123|ENST00000308973|TLR10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.303124	1036.5917	-0.0448	-2.3265E-05	-0.47638	-0.00024739	-0.52118	-0.00027065	519.3027286596395	41.215	0.58746	40.987	40.767	41.355	-0.2278	0.031981	-0.00038634	NaN	25.45	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	777130	+		40934	26833	28231	28284							0.07486315994378856
LILIIHDSN	9	Unmodified	_LILIIHDSN_					0	0	0			REV__ENSG00000174123|ENST00000308973|TLR10	REV__ENSG00000174123|ENST00000308973|TLR10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.303124	1036.5917	-0.65744	-0.00034141	0.15371	7.982E-05	-0.50374	-0.00026159	519.3031096611356	41.217	0.58257	40.987	40.771	41.354	-0.23029	0.032333	0.00026808	NaN	25.45	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804510	+		40935	26833	28231	28284							0.07486315994378856
LILIINEPD	9	Unmodified	_LILIINEPD_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8214111328125	2	520.305332	1038.59611	-0.46429	-0.00024157	-0.071646	-3.7278E-05	-0.53594	-0.00027885	520.3053310611417	81.698	0.34083	81.556	81.357	81.698	-0.14248					18	7	3	0	0	0	0.024457	1	9814	9814		21.96	0	1	75678	+		40936	23835	28232	28285	46347	46347					0.07835780417281057
LILISTNGSFI	11	Unmodified	_LILISTNGSFI_					0	0	0		ENST00000487402.1_1_3:52291508-52301068:-|nuORF;ENSG00000164091|ENST00000296490|WDR82	ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENST00000487402.1_1_3:52291508-52301068:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.343994140625	2	589.344989	1176.67542	-1.1197	-0.00065991	-2.1296	-0.001255	-3.2493	-0.001915	589.3435077588188	103.81	0.67852	103.68	103.38	104.06	-0.12927					45	16	4	0	0	0	1.0483	1	12944	12944		25.574	3.6142	1	466270			40937	7210	28233	28286	46348	46348					0.09415427371436635
LILITIKN	8	Unmodified	_LILITIKN_					0	0	0		ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	ENSG00000176230|ENST00000641386|OR4K17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.3153991699219	2	464.315503	926.616454	-0.85873	-0.00039872	0.94483	0.0004387	0.0861	3.9977E-05	464.3157970359227	61.163	0.82434	60.987	60.753	61.577	-0.1761					40	19	3	0	0	0	0.50239	1	6853	6853		85.359	0	1	1307800			40938	8623	28234	28287	46349	46349					0.15020995867757847
LILITTLS	8	Unmodified	_LILITTLS_					0	0	0			REV__ENSG00000233056|ENST00000447535|ERVH48-1	REV__ENSG00000233056|ENST00000447535|ERVH48-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.7746276855469	2	437.286411	872.55827	-1.0345	-0.00045237	3.2065	0.0014022	2.172	0.00094978	437.2876200215188	90.323	0.19926	90.168	90.022	90.222	-0.1552					7	4	2	0	0	0	0.027866	1	11036	11036		4.3163	0	1	46149	+		40939	28906	28235	28288	46350	46350					0.11689314222473968
LILKARLTS	9	Unmodified	_LILKARLTS_					0	0	0			REV__ENST00000261187.8_1_12:60179162-60179252:+|nuORF	REV__ENST00000261187.8_1_12:60179162-60179252:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8369140625	2	507.837134	1013.65972	1.2098	0.00061437	-1.3261	-0.00067343	-0.11631	-5.9066E-05	507.83635996070103	17.637	0.3994	17.483	17.308	17.708	-0.15403					24	7	4	0	0	0	0.92825	1	214	214		30.504	0	1	519650	+		40940	29611	28236	28289	46351	46351					0.153431856450311
LILKDSFGT	9	Unmodified	_LILKDSFGT_					0	0	0		ENST00000466604.5_1_3:31863684-32001816:-|nuORF	ENST00000466604.5_1_3:31863684-32001816:-|nuORF	ENST00000466604.5_1_3:31863684-32001816:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2836608886719	2	497.2844	992.554247	-0.056962	-2.8327E-05	-3.3314	-0.0016567	-3.3884	-0.001685	497.2827894016265	81.853	1.2441	81.853	81.506	82.75	0					59	29	3	0	0	0	0.082191	1	10194	10194		116.9	5.2553	1	2309000			40941	14815	28237	28290	46352	46352					0.057672247287769096
LILKTEPNIE	10	Unmodified	_LILKTEPNIE_					0	0	0			REV__ENSG00000140093|ENST00000261994|SERPINA10	REV__ENSG00000140093|ENST00000261994|SERPINA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2822265625	2	585.342446	1168.67034	-0.77839	-0.00045563	1.4356	0.00084033	0.65723	0.00038471	585.3432142531354	51.275	0.37877	50.999	50.816	51.195	-0.27643					17	9	2	0	0	0	0.03519	1	5269	5269		60.118	17.254	1	258780	+		40942	23989	28238	28291	46353	46353					0.09275123508814431
LILKVSVNT	9	Unmodified	_LILKVSVNT_					0	0	0			REV__nc|ENSG00000173482|P28827|PTPRM	REV__nc|ENSG00000173482|P28827|PTPRM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.815673828125	2	493.815867	985.617182	-0.81805	-0.00040397	0.37671	0.00018602	-0.44134	-0.00021794	493.8159769780723	20.961	0.79062	20.748	20.475	21.266	-0.2128					44	15	4	0	0	0	0.17822	1	575	575		93.195	5.4412	1	1563700	+		40943	26777	28239	28292	46354	46354					0.12379790516808953
LILLGATEIM	10	Oxidation (M)	_LILLGATEIM(Oxidation (M))_		LILLGATEIM(1)		LILLGATEIM(63)	0	0	1		IL5RA|p.L18M|1|0.38|ENSG00000091181|chr3:3104933-3104933|G/T|missense_variant	IL5RA|p.L18M|1|0.38|ENSG00000091181|chr3:3104933-3104933|G/T|missense_variant	IL5RA|p.L18M|1|0.38|ENSG00000091181|chr3:3104933-3104933|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3162841796875	2	545.314843	1088.61513	-0.40471	-0.0002207	3.6345	0.001982	3.2298	0.0017613	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.75995	1	10824	10824		63.306	12.114	1	3438300			40944	17764	28240	28293	46355	46355		560			0.07436993716669349
LILLKDIF	8	Unmodified	_LILLKDIF_					0	0	0			REV__ENSG00000147613|ENST00000276616|PSKH2	REV__ENSG00000147613|ENST00000276616|PSKH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.81756591796875	2	487.817879	973.621205	-0.22747	-0.00011096	1.5506	0.00075639	1.3231	0.00064542	487.8178462587236	103.92	1.81	103.91	103.44	105.25	-0.0032196					68	49	2	0	0	0	1.0574	1	13254	13254		26.796	0	1	194730	+		40945	24572	28241	28294	46356	46356					0.13333880010520716
LILLKMDQV	9	Oxidation (M)	_LILLKM(Oxidation (M))DQV_		LILLKM(1)DQV		LILLKM(140)DQV	0	0	1			REV__ENST00000321356.8_1_2:201724451-201724856:-|nuORF	REV__ENST00000321356.8_1_2:201724451-201724856:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.8215942382812	2	544.822835	1087.63112	0.4339	0.0002364	-3.4443	-0.0018765	-3.0104	-0.0016401	544.820693758924	98.64	1.4015	98.504	98.233	99.635	-0.13625					62	33	3	0	0	0	0.034181	1	12202	12202		138.24	13.648	1	576460	+		40946	30345	28242	28295	46357	46357		868			0.09080699953574367
LILLKMDQV	9	Oxidation (M)	_LILLKM(Oxidation (M))DQV_		LILLKM(1)DQV		LILLKM(99)DQV	0	0	1			REV__ENST00000321356.8_1_2:201724451-201724856:-|nuORF	REV__ENST00000321356.8_1_2:201724451-201724856:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.8212890625	2	544.822835	1087.63112	-0.59151	-0.00032227	-2.3397	-0.0012747	-2.9312	-0.001597	544.8212457030517	98.764	1.6467	98.596	98.113	99.759	-0.16863					109	39	4	0	0	0	0.15029	1	12269	12269		99.375	11.621	1	820000	+		40947	30345	28242	28295	46358	46358		868			0.09080699953574367
LILLPRLAE	9	Unmodified	_LILLPRLAE_					0	0	0		SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|32|3|sense	SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|32|3|sense	SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|32|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.3396606445312	2	519.33951	1036.66447	0.55476	0.00028811	-0.87515	-0.0004545	-0.32039	-0.00016639	519.3388991441475	72.482	0.86389	72.201	71.845	72.709	-0.28124					39	21	3	0	0	0	0.43973	1	8795	8795		63.306	2.3343	1	873990			40948	38016	28243	28296	46359	46359					0.14760069787803332
LILLQEKVKN	10	Unmodified	_LILLQEKVKN_					0	0	0		nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1;nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.3797607421875	2	599.381906	1196.74926	-0.67183	-0.00040268	-2.4976	-0.001497	-3.1695	-0.0018997	599.3803918245654	102.23	0.72807	102.24	101.98	102.71	0.0073471					50	16	4	0	0	0	1.0665	1	13092	13092		37.159	2.0071	1	866470			40949	6315	28244	28297	46360	46360					0.15875395533748815
LILLSAWSD	9	Unmodified	_LILLSAWSD_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.76348876953125	2	509.2844	1016.55425	-1.0507	-0.00053509	-1.6078	-0.00081881	-2.6584	-0.0013539	509.2834496384226	48.291	1.0482	48.015	47.89	48.938	-0.27598					41	28	2	0	0	0	0.024535	1	4917	4917		18.324	0	1	2682600	+		40950	20707	28245	28298	46361	46361					0.04663224728756177
LILLWRPP	8	Unmodified	_LILLWRPP_					0	0	0		ENST00000472424.1_1_1:82447641-82450328:+|nuORF	ENST00000472424.1_1_1:82447641-82450328:+|nuORF	ENST00000472424.1_1_1:82447641-82450328:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2964782714844	2	504.323663	1006.63277	4.7418	0.0023914	1.9331	0.00097491	6.6749	0.0033663	504.3246561985497	17.917	1.1535	17.977	17.786	18.939	0.06036					67	24	5	0	0	0	0.027866	1	298	298		15.636	6.1657	1	2544500			40951	14989	28246	28299	46362	46362					0.12972121824509486
LILPETLPL	9	Unmodified	_LILPETLPL_					0	0	0		nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF	nc|ENSG00000107175|O43889-3|CREB3	nc|ENSG00000107175|O43889-3|CREB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.77734375	2	504.820618	1007.62668	-0.93767	-0.00047336	-4.2687	-0.0021549	-5.2064	-0.0026283	504.8183949847221	62.275	0.40624	62.338	62.201	62.608	0.062767					16	10	2	0	0	0	0.024487	1	7149	7149		11.511	0	1	1727900			40952	2829	28247	28300	46363	46363					0.12317558802340045
LILQCFTR	8	Unmodified	_LILQCFTR_					0	0	0			REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.28314208984375	2	497.281137	992.547722	0.2606	0.00012959	2.6488	0.0013172	2.9095	0.0014468	497.2826736619178	81.902	1.2486	81.673	81.395	82.644	-0.2289					48	28	3	0	0	0	0.33369	1	9843	9843		106.42	1.1464	1	1212900	+		40953	19731	28248	28301	46364	46364					0.051150082963886234
LILQLVSN	8	Unmodified	_LILQLVSN_					0	0	0		ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2820129394531	2	450.28166	898.548768	-0.19322	-8.7002E-05	-0.15273	-6.8769E-05	-0.34594	-0.00015577	450.281441937698	102.79	0.85701	102.79	102.53	103.38	0					50	20	4	0	0	0	1.043	1	13168	13168		30.504	6.3009	1	3439100			40954	12763	28249	28302	46365	46365					0.09543545936958253
LILQLVSN	8	Unmodified	_LILQLVSN_					0	0	0		ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.28166	898.548768	0.14276	6.428E-05	-0.87815	-0.00039542	-0.7354	-0.00033114	450.28128382836036	102.76	0.76556	102.77	102.46	103.22	0.0054245	-0.045153	-0.0001741	NaN	30.504	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3331900			40955	12763	28249	28302							0.09543545936958253
LILQLVSN	8	Unmodified	_LILQLVSN_					0	0	0		ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	450.28166	898.548768	0.29721	0.00013383	-0.72622	-0.000327	-0.42901	-0.00019317	450.2812948343477	102.85	0.76272	102.85	102.59	103.36	-0.0046082	0.034881	-3.7267E-05	NaN	30.504	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2951200			40956	12763	28249	28302							0.09543545936958253
LILQLVSN	8	Unmodified	_LILQLVSN_					0	0	0		ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.28166	898.548768	0.58265	0.00026236	-1.0739	-0.00048355	-0.49124	-0.00022119	450.28112451149985	102.94	0.87052	102.81	102.49	103.36	-0.12723	-0.001866	-0.00035036	NaN	30.504	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1921500			40957	12763	28249	28302							0.09543545936958253
LILQLVSN	8	Unmodified	_LILQLVSN_					0	0	0		ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.28166	898.548768	0.25649	0.00011549	-0.84646	-0.00038115	-0.58998	-0.00026566	450.28128932151805	103.03	0.88962	102.86	102.55	103.44	-0.17034	0.048254	-0.00014555	NaN	30.504	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4541100			40958	12763	28249	28302							0.09543545936958253
LILQWKKVA	9	Unmodified	_LILQWKKVA_					0	0	0		ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2976684570312	2	549.855327	1097.6961	-0.078984	-4.343E-05	-0.61905	-0.00034039	-0.69803	-0.00038382	549.8549225091944	54.457	0.78387	54.212	53.949	54.733	-0.2453					51	22	3	0	0	0	0.024412	1	5827	5827		40.573	3.4135	1	2644700			40959	10509	28250	28303	46366	46366					0.15116062541756037
LILRKGKPV	9	Unmodified	_LILRKGKPV_					0	0	0			REV__ENST00000481630.1_1_6:117824949-117829236:+|nuORF	REV__ENST00000481630.1_1_6:117824949-117829236:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2537231445312	2	512.355494	1022.69644	0.58229	0.00029834	-2.6439	-0.0013546	-2.0616	-0.0010563	512.3546698516777	54.515	0.66671	54.309	53.981	54.648	-0.20613					26	17	2	0	0	0	0.024487	1	5806	5806		31.955	7.7521	1	976540	+		40960	25758	28251	28304	46367	46367					0.1859948226161805
LILRTYSVPR	10	Unmodified	_LILRTYSVPR_					0	0	0		ENST00000462924.5_1_10:99206088-99212597:+|nuORF;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.91876220703125	3	406.583674	1216.72919	0.36669	0.00014909	0.40293	0.00016383	0.76962	0.00031291	406.5837615324145	110.7	0.44067	110.58	110.51	110.95	-0.12525					30	15	2	0	0	0	1.101	1	13628	13628		11.097	0	1	830120			40961	8138	28252	28305	46368	46368					0.12949644593800258
LILSFLVPW	9	Unmodified	_LILSFLVPW_					0	0	0		ENST00000497815.5_1_7:101459310-101755188:+|nuORF	ENST00000497815.5_1_7:101459310-101755188:+|nuORF	ENST00000497815.5_1_7:101459310-101755188:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.7667236328125	2	544.331153	1086.64775	-0.17213	-9.3694E-05	-3.9792	-0.002166	-4.1513	-0.0022597	544.3289415057519	46.882	0.78304	46.613	46.304	47.087	-0.26939					42	19	3	0	0	0	0.024418	1	4536	4536		37.028	0	1	1175900			40962	15602	28253	28306	46369	46369					0.10789568901827806
LILSFLVPW	9	Unmodified	_LILSFLVPW_					0	0	0		ENST00000497815.5_1_7:101459310-101755188:+|nuORF	ENST00000497815.5_1_7:101459310-101755188:+|nuORF	ENST00000497815.5_1_7:101459310-101755188:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.7665405273438	2	544.331153	1086.64775	-1.0689	-0.00058186	-3.1081	-0.0016919	-4.1771	-0.0022737	544.3294036100581	46.735	0.65064	46.541	46.309	46.959	-0.19387					40	16	3	0	0	0	0.024418	1	4519	4519		46.766	15.237	1	939380			40963	15602	28253	28306	46370	46370					0.10789568901827806
LILSPGELL	9	Unmodified	_LILSPGELL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526;ZNF526|p.D128Vfs*41|1|0.27|ENSG00000167625|chr19:42224786-42224786|A/-|frameshift_variant	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7972106933594	2	477.797143	953.579734	0.94443	0.00045125	-0.85542	-0.00040872	0.08901	4.2529E-05	477.79663613466545	96.284	2.5404	96.29	95.477	98.017	0.0065002					149	58	5	0	0	0	0.80658	1	12337	12337		38.806	6.8513	1	7638300			40964	7710	28254	28307	46371	46371					0.10108699251202324
LILSPKFS	8	Unmodified	_LILSPKFS_					0	0	0		ENST00000539693.1_1_19:19313985-19314099:-|nuORF	ENST00000539693.1_1_19:19313985-19314099:-|nuORF	ENST00000539693.1_1_19:19313985-19314099:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.7774963378906	2	452.778754	903.542954	0.40021	0.00018121	-3.3414	-0.0015129	-2.9412	-0.0013317	452.7771356402899	41.252	1.1611	41.129	40.833	41.994	-0.12317					75	32	4	0	0	0	0.845	1	3670	3670		55.504	0.73953	1	4061900			40965	16408	28255	28308	46372	46372					0.08732447425290957
LILTAGDRVN	10	Unmodified	_LILTAGDRVN_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3116455078125	2	536.31148	1070.60841	-0.66715	-0.0003578	0.98845	0.00053012	0.3213	0.00017232	536.3120255330238	96.983	0.75471	96.983	96.615	97.37	0					40	16	3	0	0	0	1.1228	1	12366	12366		22.58	0.61977	1	520020	+		40966	33406	28256	28309	46373	46373					0.07592816880332975
LILTDLTLA	9	Unmodified	_LILTDLTLA_					0	0	0		ENST00000509232.5_1_4:164057286-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7840576171875	2	486.802426	971.590298	0.51069	0.0002486	-1.152	-0.00056079	-0.64131	-0.00031219	486.80156095488695	100.89	0.34445	100.77	100.68	101.03	-0.12576					14	8	2	0	0	0	0.024535	1	12551	12551		18.324	0	1	100120			40967	15801	28257	28310	46374	46374					0.10336681905607747
LILTKRLD	8	Unmodified	_LILTKRLD_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2271728515625	2	486.316035	970.617516	-0.023712	-1.1531E-05	-0.86607	-0.00042118	-0.88978	-0.00043271	486.3155805247985	54.731	0.35528	54.5	54.246	54.601	-0.23087					16	9	2	0	0	0	0.027866	1	5838	5838		25.574	0	1	190070	+		40968	25017	28258	28311	46375	46375					0.13103210236658924
LILTVLTTS	9	Unmodified	_LILTVLTTS_					0	0	0		ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.8011779785156	2	480.802426	959.590298	-0.093749	-4.5075E-05	-3.6663	-0.0017628	-3.76	-0.0018078	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	0.90698	1	12037	12037		31.955	3.7006	1	24672000			40969	10573	28259	28312	46376	46376					0.10888681905601061
LILTVLTTSFN	11	Unmodified	_LILTVLTTSFN_					0	0	0		ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3558349609375	2	611.358096	1220.70164	-1.8096	-0.0011063	-1.3459	-0.00082285	-3.1556	-0.0019292	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	0.98904	1	11575	11575		39.253	0.49923	1	13060000			40970	10573	28260	28313	46377	46377					0.10011696542892423
LILTVYTF	8	Unmodified	_LILTVYTF_					0	0	0		ENST00000478361.6_1_10:94234505-94239065:-|nuORF	ENST00000478361.6_1_10:94234505-94239065:-|nuORF	ENST00000478361.6_1_10:94234505-94239065:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	485.286411	968.55827	0.15652	7.5958E-05	-2.4776	-0.0012023	-2.3211	-0.0011264	485.2850914499703	53.94	1.1962	53.742	53.387	54.583	-0.19739					49	34	2	0	0	0	0.027866	1	5825	5825		7.6903	0	1	1139200			40971	15144	28261	28314	46378	46378					0.07273314222459248
LILVMLEIV	9	Unmodified	_LILVMLEIV_					0	0	0		ENST00000434425.5_1_13:34398105-34399951:+|nuORF	ENST00000434425.5_1_13:34398105-34399951:+|nuORF	ENST00000434425.5_1_13:34398105-34399951:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2721557617188	2	521.832672	1041.65079	-0.55829	-0.00029134	3.6153	0.0018866	3.057	0.0015953	521.8345251729088	42.709	0.50507	42.709	42.497	43.002	0					32	13	3	0	0	0	0.024497	1	3921	3921		20.482	11.299	1	284870			40972	14245	28262	28315	46379	46379					0.13163075964348536
LILVMLEIV	9	Unmodified	_LILVMLEIV_					0	0	0		ENST00000434425.5_1_13:34398105-34399951:+|nuORF	ENST00000434425.5_1_13:34398105-34399951:+|nuORF	ENST00000434425.5_1_13:34398105-34399951:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.832672	1041.65079	-0.18184	-9.4889E-05	3.2941	0.001719	3.1123	0.0016241	521.8342681249259	42.936	0.50443	42.796	42.595	43.1	-0.13929	-0.015761	1.458E-06	NaN	20.482	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218940			40973	14245	28262	28315							0.13163075964348536
LILVMLEIV	9	Unmodified	_LILVMLEIV_					0	0	0		ENST00000434425.5_1_13:34398105-34399951:+|nuORF	ENST00000434425.5_1_13:34398105-34399951:+|nuORF	ENST00000434425.5_1_13:34398105-34399951:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.832672	1041.65079	0.13387	6.9858E-05	2.9832	0.0015567	3.117	0.0016266	521.8341222120135	42.903	0.43115	42.931	42.682	43.113	0.027763	0.11867	-0.00032305	NaN	20.482	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250920			40974	14245	28262	28315							0.13163075964348536
LILVVHVLAL	10	Unmodified	_LILVVHVLAL_					0	0	0			REV__ENSG00000221836|ENST00000641693|OR2A5	REV__ENSG00000221836|ENST00000641693|OR2A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.373352	1088.73215	-0.78387	-0.0004275	-2.5861	-0.0014104	-3.37	-0.0018379	545.3718589142817	89.033	0.12616	88.863	88.757	88.883	-0.17054					4	2	2	0	0	0	0.03519	1	10849	10849		19.36	6.4008	1	56614	+		40975	28830	28263	28316	46380	46380					0.1913351971859356
LILVYMQKI	9	Unmodified	_LILVYMQKI_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7665405273438	2	560.843571	1119.67259	0.2178	0.00012215	3.4184	0.0019172	3.6362	0.0020393	560.8453507395151	22.863	0.37331	22.674	22.466	22.839	-0.18894					16	7	3	0	0	0	0.024541	1	834	834		18.324	6.8134	1	107020	+		40976	28369	28264	28317	46381	46381					0.11753880712922182
LILVYMQKI	9	Unmodified	_LILVYMQKI_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.843571	1119.67259	0.89061	0.00049949	3.0168	0.001692	3.9075	0.0021915	560.845128846965	22.972	0.41658	22.781	22.572	22.988	-0.19117	0.042386	-0.00061116	NaN	18.324	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100460	+		40977	28369	28264	28317							0.11753880712922182
LILYHGKLN	9	Unmodified	_LILYHGKLN_					0	0	0			REV__ENST00000370546.5_2_10:100219485-100249948:-|nuORF	REV__ENST00000370546.5_2_10:100219485-100249948:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2705688476562	2	535.821484	1069.62842	-0.42926	-0.00023001	-2.7626	-0.0014803	-3.1919	-0.0017103	535.819665712985	52.542	0.4943	52.634	52.445	52.939	0.091938					17	12	2	0	0	0	0.024443	1	5546	5546		26.796	3.7536	1	140400	+		40978	31131	28265	28318	46382	46382					0.09638612610956443
LILYKLSLV	9	Unmodified	_LILYKLSLV_					0	0	0			REV__ENST00000522308.1_1_8:121457695-121463626:+|nuORF	REV__ENST00000522308.1_1_8:121457695-121463626:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8018798828125	2	531.352086	1060.68962	-0.25716	-0.00013664	-0.16458	-8.7448E-05	-0.42173	-0.00022409	531.3518874713628	78.948	0.7446	78.967	78.609	79.354	0.018677					30	17	2	0	0	0	0.024541	1	9752	9752		20.947	3.582	1	159690	+		40979	34337	28266	28319	46383	46383					0.16170124590371415
LILYKLYFDII	11	Unmodified	_LILYKLYFDII_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.9518737792969	3	471.951252	1412.83193	-0.37479	-0.00017688	1.1349	0.00053561	0.76009	0.00035872	471.9519256674257	104.43	0.62478	104.3	104.06	104.68	-0.12928					44	18	3	0	0	0	1.1027	1	13002	13002		10.587	0	1	198840	+		40980	23860	28267	28320	46384	46384					0.1420229254190417
LILYQGLKE	9	Unmodified	_LILYQGLKE_					0	0	0		ENST00000264220.6_1_4:57267056-57268281:-|nuORF	ENST00000264220.6_1_4:57267056-57268281:-|nuORF	ENST00000264220.6_1_4:57267056-57268281:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7997436523438	2	538.82115	1075.62775	-0.38574	-0.00020784	1.2184	0.00065652	0.8327	0.00044868	538.8216056718578	68.288	0.20205	68.057	67.875	68.077	-0.23048					6	4	2	0	0	0	0.024381	1	7879	7879		37.159	0	1	56392			40981	11555	28268	28321	46385	46385					0.09295773171243127
LILYTLTVAGN	11	Unmodified	_LILYTLTVAGN_					0	0	0		nc|ENSG00000158731|Q8NGY7|OR10J6P	nc|ENSG00000158731|Q8NGY7|OR10J6P	nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3436279296875	2	589.344989	1176.67542	-0.80911	-0.00047685	-2.3196	-0.001367	-3.1287	-0.0018439	589.3434865746038	94.967	0.64822	94.829	94.506	95.155	-0.13779					49	14	4	0	0	0	1.018	1	11689	11689		32.812	0	1	1636700			40982	18417	28269	28322	46386	46386					0.09415427371436635
LIMDTMSFL	9	Oxidation (M)	_LIM(Oxidation (M))DTMSFL_		LIM(0.999)DTM(0.001)SFL		LIM(32)DTM(-32)SFL	0	0	1			REV__ENSG00000127948|ENST00000461988|POR	REV__ENSG00000127948|ENST00000461988|POR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.7626953125	2	543.764129	1085.5137	-0.8708	-0.00047351	-1.845	-0.0010032	-2.7158	-0.0014767	543.7627828558142	84.132	1.2286	84.132	83.605	84.834	0					92	28	5	0	0	0	0.29104	1	10516	10516		76.847	11.043	2	1592400	+		40983	22954	28270	28323	46387	46387		686			-0.0256320097751086
LIMDTMSFL	9	Oxidation (M)	_LIM(Oxidation (M))DTMSFL_		LIM(1)DTMSFL		LIM(42)DTM(-42)SFL	0	0	1			REV__ENSG00000127948|ENST00000461988|POR	REV__ENSG00000127948|ENST00000461988|POR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.7623291015625	2	543.764129	1085.5137	-1.3138	-0.00071438	-1.5721	-0.00085486	-2.8859	-0.0015692	543.7630002857842	84.047	1.4454	84.074	83.427	84.872	0.026558					103	33	5	0	0	0	0.29104	1	10428	10428		76.847	11.043	2	1544300	+		40984	22954	28270	28323	46388	46388		686			-0.0256320097751086
LIMELLTNL	9	Oxidation (M)	_LIM(Oxidation (M))ELLTNL_		LIM(1)ELLTNL		LIM(130)ELLTNL	0	0	1		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3042602539062	2	538.307018	1074.59948	0.28965	0.00015592	-4.3143	-0.0023224	-4.0247	-0.0021665	538.3045680256793	85.822	2.156	85.822	85.457	87.613	0					114	50	4	0	0	0	0.057894	1	10797	10797		125.81	8.2883	1	7167900			40985	4666	28271	28324	46389	46389		185			0.06516707199625671
LIMELLTNL	9	Oxidation (M)	_LIM(Oxidation (M))ELLTNL_		LIM(1)ELLTNL		LIM(120)ELLTNL	0	0	1		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3046264648438	2	538.307018	1074.59948	-1.4916	-0.00080292	-2.686	-0.0014459	-4.1776	-0.0022488	538.305403072209	85.767	2.467	85.791	85.408	87.875	0.023666					131	58	4	0	0	0	0.067814	1	10697	10697		122.18	6.6819	1	6568400			40986	4666	28271	28324	46390	46390		185			0.06516707199625671
LIMELLTNL	9	Oxidation (M)	_LIM(Oxidation (M))ELLTNL_		LIM(1)ELLTNL		LIM(110)ELLTNL	0	0	1		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3045654296875	2	538.307018	1074.59948	0.37092	0.00019967	-3.7408	-0.0020137	-3.3699	-0.001814	538.3048003228321	85.789	1.0281	85.64	85.285	86.313	-0.14967					76	23	4	0	0	0	0.091713	1	10413	10413		113.41	8.665	1	1617000			40987	4666	28271	28324	46391	46391		185			0.06516707199625671
LIMGVCYFI	9	Carbamidomethyl (C)	_LIMGVC(Carbamidomethyl (C))YFI_	LIMGVC(1)YFI		LIMGVC(86)YFI		0	1	0		ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2900390625	2	558.285031	1114.55551	-0.53543	-0.00029892	1.5071	0.00084138	0.97166	0.00054246	558.2855897567745	57.848	0.53957	57.67	57.319	57.859	-0.17775					19	13	2	0	0	0	0.22343	1	6338	6338		85.909	8.5916	1	1643000			40988	4328	28272	28325	46392	46392	56				0.0028139950163676986
LIMITIDF	8	Unmodified	_LIMITIDF_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.27423095703125	2	483.272447	964.530341	-0.53374	-0.00025794	3.9758	0.0019214	3.4421	0.0016635	483.27440438118646	30.343	1.2938	30.352	30.002	31.296	0.0086689					85	30	4	0	0	0	0.82104	1	1945	1945		57.453	2.688	1	9559800	+		40989	19859	28273	28326	46393	46393					0.04665667970721188
LIMKRIVK	8	Unmodified	_LIMKRIVK_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.82391357421875	2	500.838623	999.662692	-0.26108	-0.00013076	-2.646	-0.0013252	-2.9071	-0.001456	500.8376689798794	42.198	0.16159	42.066	41.953	42.115	-0.13219					5	4	2	0	0	0	0.027866	1	3833	3833		3.9852	0	1	57401			40990	9736	28274	28327	46394	46394					0.1628473749818795
LIMLFPQKL	9	Unmodified	_LIMLFPQKL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.2529907226562	2	551.838288	1101.66202	-1.2792	-0.00070592	-3.4705	-0.0019151	-4.7497	-0.002621	551.837440059968	46.07	0.45337	45.918	45.683	46.136	-0.15157					25	12	3	0	0	0	0.024325	1	4471	4471		50.025	2.1089	1	174300			40991	6234	28275	28328	46395	46395					0.11525898058494022
LIMMPAPGA	9	Unmodified	_LIMMPAPGA_					0	0	0		ENST00000518820.1_1_8:143560496-143561060:+|nuORF	ENST00000518820.1_1_8:143560496-143561060:+|nuORF	ENST00000518820.1_1_8:143560496-143561060:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7813415527344	2	450.737717	899.460881	0.71372	0.0003217	4.0381	0.0018201	4.7518	0.0021418	450.7395009371781	98.529	0.12237	98.525	98.432	98.554	-0.0035019					4	2	2	0	0	0	0.024475	1	12501	12501		21.702	0.7554	1	44494			40992	15935	28276	28329	46396	46396					0.007128857503175823
LIMSREGKQM	10	Unmodified	_LIMSREGKQM_					0	0	0			REV__ENST00000264331.8_2_3:25656718-25656929:-|nuORF	REV__ENST00000264331.8_2_3:25656718-25656929:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	596.8140869140625	2	596.812476	1191.6104	-0.82009	-0.00048944	3.4684	0.00207	2.6483	0.0015805	596.8144809670995	55.328	0.88951	55.177	54.894	55.784	-0.15036					71	24	4	0	0	0	0.57594	1	6075	6075		79.713	7.4694	1	4694500	+		40993	29717	28277	28330	46397	46397					0.02225786302255983
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_		LIM(1)TVPATIL		LIM(130)TVPATIL	0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.323974609375	2	544.325211	1086.63587	-0.97113	-0.00052861	-1.8501	-0.0010071	-2.8212	-0.0015357	544.324091947251	103.02	1.348	103.02	102.77	104.12	0					81	32	5	0	0	0	0.10389	3	13209	13209;13218;13231		134.81	44.034	1	2335900	+		40994	28631	28278	28331	46398;46399;46400	46398		850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_		LIM(1)TVPATIL		LIM(100)TVPATIL	0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.3242797851562	2	544.325211	1086.63587	-0.69621	-0.00037896	-2.0989	-0.0011425	-2.7951	-0.0015215	544.323945002171	102.98	1.0849	102.99	102.67	103.75	0.0054245					64	27	4	0	0	0	0.34101	4	13170	13158;13170;13181;13193		104.75	37.393	1	2344000	+		40995	28631	28278	28331	46401;46402;46403;46404	46402		850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_		LIM(1)TVPATIL		LIM(100)TVPATIL	0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.3240356445312	2	544.325211	1086.63587	-0.54575	-0.00029707	-2.3637	-0.0012866	-2.9094	-0.0015837	544.3238341020049	103.04	0.97617	103.03	102.79	103.77	-0.0046005					71	23	5	0	0	0	0.34101	3	13130	13130;13141;13152		104.75	19.831	1	2545300	+		40996	28631	28278	28331	46405;46406;46407	46405		850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_					0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	544.325211	1086.63587	-0.97113	-0.00052861	-1.8501	-0.0010071	-2.8212	-0.0015357	544.324091947251	103.02	1.348	103.02	102.77	104.12	0	0.13803	0.00025149	NaN	134.81	81	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2335900	+		40997	28631	28278	28331				850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_					0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	544.325211	1086.63587	-0.69621	-0.00037896	-2.0989	-0.0011425	-2.7951	-0.0015215	544.323945002171	102.98	1.0849	102.99	102.67	103.75	0.0054245	0.10252	-1.9409E-05	NaN	134.81	64	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2344000	+		40998	28631	28278	28331				850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_					0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	544.325211	1086.63587	-0.54575	-0.00029707	-2.3637	-0.0012866	-2.9094	-0.0015837	544.3238341020049	103.04	0.97617	103.03	102.79	103.77	-0.0046005	0.14754	-0.00030763	NaN	134.81	71	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2545300	+		40999	28631	28278	28331				850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_					0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.325211	1086.63587	0.044933	2.4458E-05	-2.5691	-0.0013984	-2.5241	-0.001374	544.3236961916498	102.87	0.57198	102.74	102.49	103.06	-0.12878	-0.14731	-0.00053124	NaN	134.81	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188280	+		41000	28631	28278	28331				850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_					0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.325211	1086.63587	-0.27154	-0.00014781	-2.1627	-0.0011772	-2.4342	-0.001325	544.3239587406667	102.88	0.50341	102.75	102.5	103	-0.12783	-0.13863	-8.8822E-05	NaN	134.81	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182870	+		41001	28631	28278	28331				850			0.09601584096344595
LIMTVPATIL	10	Oxidation (M)	_LIM(Oxidation (M))TVPATIL_					0	0	1			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.325211	1086.63587	-0.31937	-0.00017384	-1.7307	-0.00094207	-2.0501	-0.0011159	544.3240799687372	102.95	0.49178	102.78	102.55	103.04	-0.17034	-0.10215	0.00038145	NaN	134.81	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215760	+		41002	28631	28278	28331				850			0.09601584096344595
LINANQFA	8	Unmodified	_LINANQFA_					0	0	0			REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.2691650390625	2	445.74016	889.465767	-0.16929	-7.5461E-05	-2.7105	-0.0012082	-2.8798	-0.0012837	445.73878357708924	65.251	0.96936	65.288	64.928	65.898	0.037376					66	26	4	0	0	0	0.027866	1	7641	7641		52.299	0	1	3024500	+		41003	21963	28279	28332	46408	46408					0.016612292089462244
LINAYTEGH	9	Unmodified	_LINAYTEGH_					0	0	0			REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	REV__sp|P0CAP6|RIR2_EBVB9Ribonucleoside-diphosphatereductasesmallsubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.82708740234375	2	509.253631	1016.49271	-1.2382	-0.00063054	2.9263	0.0014902	1.6881	0.00085969	509.7571918199399	40.937	0.3314	40.707	40.554	40.886	-0.2303					10	8	2	0	0	0	0.02435	1	3544	3544		51.335	17.163	1	59760	+		41004	37558	28280	28333	46409	46409					-0.014877069705221402
LINDHLNED	9	Unmodified	_LINDHLNED_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.7642211914062	2	541.759278	1081.504	-0.553	-0.00029959	1.5369	0.00083264	0.98391	0.00053304	541.7593197344673	49.933	0.90627	49.782	49.482	50.388	-0.1512					46	25	3	0	0	0	0.02435	1	5176	5176		60.972	25.354	1	253490	+		41005	27924	28281	28334	46410	46410					-0.033489296670495605
LINEIFLSI	9	Unmodified	_LINEIFLSI_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.G1180Vfs*6|1|0.21|ENSG00000132549|chr8:99467505-99467505|G/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;ENST00000521932.1_1_8:100168860-100253210:+|nuORF;nc|ENSG00000132549|Q7Z7G8-4|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2978515625	2	531.3157	1060.61685	-0.33603	-0.00017854	-0.16526	-8.7806E-05	-0.50129	-0.00026634	531.3153545574794	65.912	0.92905	65.671	65.372	66.301	-0.24145					57	22	4	0	0	0	0.023454	1	7515	7515		71.877	24.22	1	1509800			41006	4619	28282	28335	46411	46411					0.0889637079694694
LINELQQF	8	Unmodified	_LINELQQF_					0	0	0			REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7933654785156	2	502.7742	1003.53385	-0.11614	-5.8394E-05	-1.7874	-0.00089864	-1.9035	-0.00095704	503.27553936085695	63.933	0.36227	63.741	63.638	64	-0.19243					12	8	2	0	0	0	0.027866	1	7280	7280		33.516	8.0654	1	264480	+		41007	27697	28283	28336	46412	46412					0.03222054068953639
LINHLEAIL	9	Unmodified	_LINHLEAIL_					0	0	0			REV__PTEN|p.R74Pfs*20|1|0.13|ENSG00000171862|chr10:87931055-87931070|AAGACATTATGACACC/-|frameshift_variant	REV__PTEN|p.R74Pfs*20|1|0.13|ENSG00000171862|chr10:87931055-87931070|AAGACATTATGACACC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.747314453125	2	518.313492	1034.61243	0.12555	6.5073E-05	-1.5006	-0.00077777	-1.375	-0.0007127	518.3123339804937	47.548	0.33047	47.361	47.161	47.491	-0.18684					11	8	2	0	0	0	0.024436	1	4673	4673		23.042	0	1	118260	+		41008	37418	28284	28337	46413	46413					0.09650906374031365
LINIELII	8	Unmodified	_LINIELII_					0	0	0			REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.8076477050781	2	470.807511	939.600469	0.45222	0.00021291	-0.27335	-0.00012869	0.17887	8.4215E-05	470.8072280001935	106.45	0.47737	106.45	106.2	106.67	-0.0013199					33	14	3	0	0	0	0.87148	1	13623	13623		53.351	0	1	611580	+		41009	35322	28285	28338	46414	46414					0.12825289630870884
LINIELII	8	Unmodified	_LINIELII_					0	0	0			REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.807511	939.600469	1.184	0.00055742	-1.0178	-0.00047917	0.1662	7.8251E-05	470.8068652690213	106.51	0.40898	106.51	106.29	106.7	0	0.13128	-0.00067284	NaN	53.351	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202980	+		41010	35322	28285	28338							0.12825289630870884
LINIELII	8	Unmodified	_LINIELII_					0	0	0			REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	470.807511	939.600469	0.45222	0.00021291	-0.27335	-0.00012869	0.17887	8.4215E-05	470.8072280001935	106.45	0.47737	106.45	106.2	106.67	-0.0013199	0.073628	2.8116E-05	NaN	53.351	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611580	+		41011	35322	28285	28338							0.12825289630870884
LINIELII	8	Unmodified	_LINIELII_					0	0	0			REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.807511	939.600469	0.5752	0.00027081	-0.57513	-0.00027078	7.2283E-05	3.4032E-08	470.80709120648953	106.6	0.49242	106.6	106.37	106.86	0.0018387	0.22541	-0.00025605	NaN	53.351	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377660	+		41012	35322	28285	28338							0.12825289630870884
LINIELII	8	Unmodified	_LINIELII_					0	0	0			REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.807511	939.600469	-0.88719	-0.0004177	1.2743	0.00059994	0.38708	0.00018224	470.8079764084727	106.29	0.27155	106.16	106.04	106.31	-0.13279	-0.22138	0.0014854	NaN	53.351	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94605	+		41013	35322	28285	28338							0.12825289630870884
LINIELII	8	Unmodified	_LINIELII_					0	0	0			REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	REV__ENST00000567521.1_1_16:66847354-66847468:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.807511	939.600469	0.2642	0.00012439	-0.35751	-0.00016832	-0.093304	-4.3928E-05	470.8072729264057	106.33	0.33757	106.17	106.07	106.4	-0.16132	-0.20893	-5.113E-05	NaN	53.351	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65279	+		41014	35322	28285	28338							0.12825289630870884
LINIHHLMV	9	Unmodified	_LINIHHLMV_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.316162109375	2	545.315512	1088.61647	-0.49641	-0.0002707	3.1384	0.0017114	2.642	0.0014407	545.3167995568245	101.47	1.1348	101.46	101.15	102.28	-0.0054474					62	25	4	0	0	0	0.88411	1	12907	12907		33.516	1.9858	1	1300000			41015	10639	28286	28339	46415	46415					0.07570672596102668
LINKALKKV	9	Unmodified	_LINKALKKV_					0	0	0			REV__ENST00000492026.4_1_14:74507337-74544940:+|nuORF	REV__ENST00000492026.4_1_14:74507337-74544940:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8367309570312	2	513.855327	1025.6961	-0.29005	-0.00014904	-2.1221	-0.0010904	-2.4121	-0.0012395	513.8536509504451	68.333	0.34247	68.333	68.102	68.444	0					14	8	2	0	0	0	0.024436	1	8200	8200		23.042	10.083	1	169160	+		41016	22467	28287	28340	46416	46416					0.18428062541715917
LINKCLGLVP	10	Unmodified	_LINKCLGLVP_					0	0	0			REV__ENSG00000148483|ENST00000377495|TMEM236	REV__ENSG00000148483|ENST00000377495|TMEM236	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.3263549804688	2	535.325545	1068.63654	-0.63624	-0.0003406	0.31351	0.00016783	-0.32273	-0.00017277	535.3255467471857	77.819	0.63907	77.657	77.398	78.037	-0.16196					36	14	3	0	0	0	0.65054	1	9262	9262		71.296	10.324	1	1095700	+		41017	24621	28288	28341	46417	46417					0.10496423536051225
LINKDIRCKVC	11	Unmodified	_LINKDIRCKVC_					0	0	0		ENST00000590325.1_1_19:13049472-13051084:+|nuORF	ENST00000590325.1_1_19:13049472-13051084:+|nuORF	ENST00000590325.1_1_19:13049472-13051084:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.57769775390625	3	435.577425	1303.71045	1.4143	0.00061602	-0.6855	-0.00029859	0.72877	0.00031743	435.57704527423255	110.37	0.77484	110.37	110.08	110.86	0					74	23	4	0	0	0	1.0281	1	14032	14032		30.569	10.254	1	451640			41018	17328	28289	28342	46418	46418					0.07074023636073434
LINKLNFLD	9	Unmodified	_LINKLNFLD_					0	0	0		EHBP1-MDH1|1|fusion;EHBP1-MDH1|2|fusion;EHBP1|p.E288Tfs*36|1|0.3|ENSG00000115504|chr2:62859281-62859282|-/GACTCAGA|frameshift_variant;EHBP1-MDH1|3|fusion;EHBP1-MDH1|4|fusion;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	EHBP1-MDH1|1|fusion;ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3330688476562	2	545.318774	1088.623	0.9133	0.00049804	-4.3249	-0.0023585	-3.4116	-0.0018604	545.3160485036983	97.753	1.2231	97.629	97.018	98.241	-0.12368					37	28	2	0	0	0	0.024354	1	12033	12033		38.806	27.941	1	76367			41019	3455;687	28290	28343	46419	46419					0.08222889028479585
LINLEIKHI	9	Unmodified	_LINLEIKHI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8397827148438	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	0.59099	1	12787	12787		53.351	10.955	1	11254000			41020	1175	28291	28344	46420	46420					0.12811168299458586
LINLEIKHI	9	Unmodified	_LINLEIKHI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.840576171875	2	546.842416	1091.67028	-0.54263	-0.00029673	-3.6256	-0.0019826	-4.1682	-0.0022794	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	0.59099	1	12718	12718		53.351	9.2347	1	11370000			41021	1175	28291	28344	46421	46421					0.12811168299458586
LINLEIKHI	9	Unmodified	_LINLEIKHI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.841064453125	2	546.842416	1091.67028	-0.3389	-0.00018533	-3.9718	-0.002172	-4.3107	-0.0023573	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	0.70186	1	12448	12448		45.952	10.334	1	9530200			41022	1175	28291	28344	46422	46422					0.12811168299458586
LINLGLIKV	9	Unmodified	_LINLGLIKV_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2923583984375	2	491.836603	981.658653	-0.11624	-5.7171E-05	0.44896	0.00022081	0.33272	0.00016364	491.83663378639403	79.337	1.3377	79.337	78.783	80.12	0					42	31	2	0	0	0	0.024354	1	9839	9839		47.916	10.756	1	122990			41023	6972	28292	28345	46423	46423					0.16708971276148077
LINLGLIKV	9	Unmodified	_LINLGLIKV_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2924499511719	2	491.836603	981.658653	-0.88361	-0.00043459	1.2163	0.00059821	0.33266	0.00016362	491.8369399482615	79.625	1.7545	79.453	78.526	80.28	-0.17226					66	41	2	0	0	0	0.024	1	9846	9846		65.803	12.452	1	114800			41024	6972	28292	28345	46424	46424					0.16708971276148077
LINPSDEA	8	Unmodified	_LINPSDEA_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.73779296875	2	429.713808	857.413062	0.17621	7.572E-05	3.1374	0.0013482	3.3136	0.0014239	429.7151223864177	39.958	0.72018	39.958	39.594	40.314	0					41	19	3	0	0	0	0.027866	1	3451	3451		27.882	0	1	690630			41025	4541	28293	28346	46425	46425					-0.02134773644525012
LINREEEF	8	Unmodified	_LINREEEF_					0	0	0			REV__ENSG00000122966|ENST00000392521|CIT	REV__ENSG00000122966|ENST00000392521|CIT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.266845703125	2	525.266739	1048.51892	0.31642	0.00016621	0.43666	0.00022936	0.75308	0.00039557	525.2663804263314	83.7	1.6244	83.561	82.995	84.619	-0.1386					96	37	6	0	0	0	0.71833	1	10094	10094		65.803	2.4969	1	901040	+		41026	22672	28294	28347	46426	46426					-0.00339437799038933
LINRGVNL	8	Unmodified	_LINRGVNL_					0	0	0		nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;nc|ENSG00000111641|P46087-3|NOP2;ENST00000536506.5_1_12:6669839-6672276:-|nuORF	nc|ENSG00000111641|P46087-2|NOP2	nc|ENSG00000111641|P46087-2|NOP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7409973144531	2	449.777077	897.5396	-0.6148	-0.00027652	0.30898	0.00013897	-0.30583	-0.00013755	449.77696724788575	30.408	0.49555	30.482	30.254	30.75	0.074314					15	11	2	0	0	0	0.027866	1	1880	1880		33.516	8.0654	1	52129			41027	3128	28295	28348	46427	46427					0.08673197371274455
LINRKSNL	8	Unmodified	_LINRKSNL_					0	0	0			REV__LIPT1|p.W362R|1|0.12|ENSG00000144182|chr2:99163041-99163041|T/C|missense_variant	REV__LIPT1|p.W362R|1|0.12|ENSG00000144182|chr2:99163041-99163041|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2972717285156	2	479.295633	956.576714	1.0001	0.00047936	3.5978	0.0017244	4.598	0.0022038	479.2971482998715	70.303	1.5577	70.01	69.551	71.109	-0.29291					69	42	3	0	0	0	0.91239	1	8447	8447		50.025	0	1	5900200	+		41028	36314	28296	28349	46428	46428					0.09668868917037798
LINRPILVL	9	Unmodified	_LINRPILVL_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.85546875	2	525.855327	1049.6961	0.193	0.00010149	-0.17388	-9.1438E-05	0.019113	1.0051E-05	525.8550687122862	77.053	0.5423	76.785	76.424	76.966	-0.26807					32	12	4	0	0	0	0.52323	1	9141	9141		57.811	7.7867	1	817830			41029	9573	28297	28350	46429	46429					0.17324062541752028
LINRPILVL	9	Unmodified	_LINRPILVL_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.8556518554688	2	525.855327	1049.6961	0.34124	0.00017945	-0.40187	-0.00021133	-0.060626	-3.1881E-05	525.8549604776006	76.933	0.54391	76.681	76.399	76.943	-0.25162					29	12	3	0	0	0	0.40179	1	9152	9152		65.803	4.8312	1	635830			41030	9573	28297	28350	46430	46430					0.17324062541752028
LINRVSPII	9	Unmodified	_LINRVSPII_					0	0	0			REV__ENST00000479748.5_1_6:126359878-126359941:+|nuORF	REV__ENST00000479748.5_1_6:126359878-126359941:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3086547851562	2	512.829309	1023.64407	-0.095233	-4.8838E-05	-0.5887	-0.0003019	-0.68393	-0.00035074	512.8289992592454	54.556	0.77293	54.406	54.084	54.857	-0.15036					53	21	3	0	0	0	0.024374	1	5955	5955		40.778	0	1	1173500	+		41031	33408	28298	28351	46431	46431					0.13318899127989425
LINSEEIPE	9	Unmodified	_LINSEEIPE_					0	0	0			REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.809814453125	2	522.266404	1042.51826	-0.43711	-0.00022829	-0.59538	-0.00031095	-1.0325	-0.00053923	522.2654909676586	53.06	1.0232	53.156	52.677	53.7	0.095669					37	27	2	0	0	0	0.023274	1	5734	5734		87.696	0	1	1033500	+		41032	22678	28299	28352	46432	46432					-0.0013027723878167308
LINSNLVCKV	10	Unmodified	_LINSNLVCKV_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8162231445312	2	551.818084	1101.62162	-0.80995	-0.00044694	-1.0279	-0.00056719	-1.8378	-0.0010141	551.81745148556	93.291	0.71577	93.287	92.99	93.706	-0.0042038					43	16	4	0	0	0	0.61732	1	11821	11821		75.043	6.1972	1	1115600			41033	1093	28300	28353	46433	46433					0.07486931668063335
LINVGSID	8	Unmodified	_LINVGSID_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2121887207031	2	415.734543	829.454533	-0.37027	-0.00015393	0.69123	0.00028737	0.32096	0.00013344	415.73497128249966	29.236	0.36238	29.314	29.165	29.527	0.078346					10	8	2	0	0	0	0.027866	1	1709	1709		19.36	0	1	92304			41034	1603	28301	28354	46434	46434					0.03298407114800739
LINVIGLSD	9	Unmodified	_LINVIGLSD_					0	0	0			REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2755126953125	2	472.276575	942.538597	1.0841	0.00051201	-4.1426	-0.0019565	-3.0585	-0.0014444	472.27458376978996	20.767	0.39337	20.836	20.661	21.054	0.068901					14	7	3	0	0	0	0.96322	1	542	542		27.882	2.3082	1	85661	+		41035	32371	28302	28355	46435	46435					0.06502938211713172
LINVIGLSD	9	Unmodified	_LINVIGLSD_					0	0	0			REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.276575	942.538597	-0.47442	-0.00022406	-2.6959	-0.0012732	-3.1703	-0.0014973	472.27526375720333	20.78	0.68223	20.78	20.562	21.244	0	-0.038373	0.00082324	NaN	27.882	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94572	+		41036	32371	28302	28355							0.06502938211713172
LINVIGLSD	9	Unmodified	_LINVIGLSD_					0	0	0			REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.276575	942.538597	-0.010198	-4.8163E-06	-2.9397	-0.0013884	-2.9499	-0.0013932	472.27510465116416	20.929	0.47817	20.839	20.63	21.109	-0.090092	0.020422	0.00059293	NaN	27.882	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103720	+		41037	32371	28302	28355							0.06502938211713172
LINVIGLSD	9	Unmodified	_LINVIGLSD_					0	0	0			REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	472.276575	942.538597	1.0841	0.00051201	-4.1426	-0.0019565	-3.0585	-0.0014444	472.27458376978996	20.767	0.39337	20.836	20.661	21.054	0.068901	0.017951	-0.00054325	NaN	27.882	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85661	+		41038	32371	28302	28355							0.06502938211713172
LINVKSTL	8	Unmodified	_LINVKSTL_					0	0	0			REV__ENST00000521384.5_1_5:21751848-21889748:-|nuORF	REV__ENST00000521384.5_1_5:21751848-21889748:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.25115966796875	2	444.28166	886.548768	-1.2603	-0.00055994	0.99413	0.00044167	-0.2662	-0.00011827	444.28196321390203	29.699	0.76654	29.699	29.37	30.137	0					29	18	3	0	0	0	0.027866	1	1799	1799		85.359	0	1	199580	+		41039	24943	28303	28356	46436	46436					0.10095545936962935
LIPAETPSPV	10	Unmodified	_LIPAETPSPV_					0	0	0		ENSG00000138642|ENST00000264346|HERC6	ENSG00000138642|ENST00000264346|HERC6	ENSG00000138642|ENST00000264346|HERC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2533569335938	2	512.289682	1022.56481	-0.11684	-5.9858E-05	-1.5529	-0.00079555	-1.6698	-0.0008554	512.2892152305113	54.543	0.57075	54.298	53.98	54.551	-0.2453					19	16	2	0	0	0	0.03519	1	5769	5769		49.442	7.0454	1	374900			41040	5258	28304	28357	46437	46437					0.054432073831776506
LIPAQSIFE	9	Unmodified	_LIPAQSIFE_					0	0	0		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.76373291015625	2	509.2844	1016.55425	-0.48315	-0.00024606	-2.0124	-0.0010249	-2.4955	-0.0012709	509.28318055146923	47.963	1.1782	47.865	47.743	48.921	-0.097553					44	31	2	0	0	0	0.024436	1	4884	4884		30.504	15.84	1	2679800			41041	7595	28305	28358	46438	46438					0.04663224728756177
LIPAQSIFE	9	Unmodified	_LIPAQSIFE_					0	0	0		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.2844	1016.55425	-0.71098	-0.00036209	-2.8713	-0.0014623	-3.5823	-0.0018244	509.2828226438817	48.167	1.6664	48.014	47.015	48.681	-0.153	0.04924	-0.00062325	NaN	30.504	69	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7198000			41042	7595	28305	28358							0.04663224728756177
LIPEHNITV	9	Unmodified	_LIPEHNITV_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.80078125	2	518.295299	1034.57605	-0.32684	-0.0001694	0.76715	0.00039761	0.44031	0.00022821	518.2955145842075	105.8	0.61139	105.8	105.34	105.95	0.00014496					31	21	2	0	0	0	0.024457	1	13454	13454		37.159	5.2042	1	101760			41043	6595	28306	28359	46439	46439					0.06014029477319127
LIPFPRAA	8	Unmodified	_LIPFPRAA_					0	0	0			REV__ENST00000468722.1_1_1:52328041-52344287:-|nuORF	REV__ENST00000468722.1_1_1:52328041-52344287:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2312316894531	2	442.771263	883.527973	0.0093507	4.1402E-06	0.23185	0.00010265	0.2412	0.0001068	442.771148525247	47.043	0.39869	46.849	46.678	47.077	-0.19387					22	10	3	0	0	0	0.027866	1	4606	4606		26.796	0	1	311910	+		41044	20614	28307	28360	46440	46440					0.08155000347937857
LIPFVQLPP	9	Unmodified	_LIPFVQLPP_					0	0	0		nc|ENSG00000122512|P54278-2|PMS2;nc|ENSG00000122512|P54278-3|PMS2;ENSG00000122512|ENST00000265849|PMS2	nc|ENSG00000122512|P54278-2|PMS2	nc|ENSG00000122512|P54278-2|PMS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2689208984375	2	512.315503	1022.61645	-0.47671	-0.00024423	-4.427	-0.002268	-4.9038	-0.0025123	512.3131714651578	79.096	1.0864	79.096	78.7	79.786	0					31	25	2	0	0	0	0.024294	1	9872	9872		29.15	0	1	323990			41045	3928	28308	28361	46441	46441					0.10604995867754496
LIPGWRVAA	9	Unmodified	_LIPGWRVAA_					0	0	0		ENST00000288828.8_1_7:5229834-5229981:+|nuORF	ENST00000288828.8_1_7:5229834-5229981:+|nuORF	ENST00000288828.8_1_7:5229834-5229981:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.79559326171875	2	491.795269	981.575986	-1.0943	-0.00053818	2.0342	0.0010004	0.93987	0.00046222	491.7961070619947	48.176	2.2411	48.078	47.855	50.096	-0.097553					125	59	4	0	0	0	0.90698	1	4757	4757		31.955	1.4512	1	3339200			41046	11772	28309	28362	46442	46442					0.08446074267976655
LIPHMLRVF	9	Oxidation (M)	_LIPHM(Oxidation (M))LRVF_		LIPHM(1)LRVF		LIPHM(41)LRVF	0	0	1		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.3320922851562	2	571.331162	1140.64777	0.16501	9.4278E-05	-0.071139	-4.0644E-05	0.093874	5.3633E-05	571.3310014080151	101.29	0.71938	101.12	100.8	101.52	-0.17178					35	15	4	0	0	0	0.78069	1	12559	12559		40.573	12.69	1	338220			41047	10202	28310	28363	46443	46443		431			0.0830724563018066
LIPIHLCLT	9	Unmodified	_LIPIHLCLT_					0	0	0		ENSG00000061492|ENST00000506684|WNT8A	ENSG00000061492|ENST00000506684|WNT8A	ENSG00000061492|ENST00000506684|WNT8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.84405517578125	2	511.806988	1021.59942	0.020325	1.0402E-05	-1.582	-0.00080967	-1.5617	-0.00079927	511.8066799711811	76.162	0.30993	76.174	76.015	76.325	0.011635					12	7	2	0	0	0	0.024443	1	9306	9306		12.959	0	1	96878			41048	1244	28311	28364	46444	46444					0.08948751990283199
LIPKVLIPV	9	Unmodified	_LIPKVLIPV_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.78082275390625	2	496.349346	990.684139	0.1594	7.9116E-05	-0.86985	-0.00043175	-0.71045	-0.00035263	496.34874199560926	90.581	0.38154	90.443	90.196	90.578	-0.13824					10	8	2	0	0	0	0.024541	1	11073	11073		12.959	0	1	24398			41049	7370	28312	28365	46445	46445					0.18842445798566132
LIPLVEPLSNV	11	Unmodified	_LIPLVEPLSNV_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.3624267578125	2	597.360639	1192.70673	0.52306	0.00031246	-3.5336	-0.0021108	-3.0105	-0.0017984	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	1.0592	1	12206	12206		22.58	1.6327	1	2779900	+		41050	19410	28313	28366	46446	46446					0.11808000405494568
LIPMPQSL	8	Unmodified	_LIPMPQSL_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7409973144531	2	449.756964	897.499375	-0.64279	-0.0002891	4.3163	0.0019413	3.6735	0.0016522	449.75887646654223	30.409	0.57991	30.484	30.254	30.834	0.074314					24	13	3	0	0	0	0.027866	1	1880	1880		71.378	0	1	197470			41051	9736	28314	28367	46447	46447					0.046525146564931674
LIPPITAS	8	Unmodified	_LIPPITAS_					0	0	0		ENST00000311601.5_1_5:171764958-171765231:-|nuORF	ENST00000311601.5_1_5:171764958-171765231:-|nuORF	ENST00000311601.5_1_5:171764958-171765231:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.24859619140625	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0239	1	11122	11122		33.516	0	1	123310000			41052	12081	28315	28368	46448	46448					0.07228185499843676
LIPPLNIA	8	Unmodified	_LIPPLNIA_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;SLC26A8|p.S369Kfs*27|1|0.07|ENSG00000112053|chr6:35977272-35977273|-/TTTTT|frameshift_variant;ENST00000486155.1_1_6:35928714-35992326:-|nuORF	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7750549316406	2	425.773471	849.53239	-0.21096	-8.9821E-05	3.6783	0.0015661	3.4673	0.0014763	425.77492564602755	43.279	1.886	43.042	42.719	44.605	-0.23737					116	50	5	0	0	0	1.0574	1	3941	3941		21.702	1.2205	1	10379000			41053	3167	28316	28369	46449	46449					0.10160464770842736
LIPPMLNPI	9	Oxidation (M)	_LIPPM(Oxidation (M))LNPI_		LIPPM(1)LNPI		LIPPM(110)LNPI	0	0	1		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2537841796875	2	512.298996	1022.58344	0.22355	0.00011452	-2.6491	-0.0013571	-2.4256	-0.0012426	512.2980473035399	54.108	0.18068	54.206	54.114	54.294	0.098015					5	4	2	0	0	0	0.019237	1	5819	5819		105.27	21.982	1	135490			41054	11074	28317	28370	46450	46450		461			0.0730504575338955
LIPPVAGGNV	10	Unmodified	_LIPPVAGGNV_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2952880859375	2	468.779285	935.544017	1.9847	0.00093038	1.0734	0.00050318	3.0581	0.0014336	468.7801724937803	63.301	0.50176	63.355	63.09	63.592	0.054104					17	13	2	0	0	0	0.03519	1	7307	7307		45.952	15.448	1	222840			41055	10617	28318	28371	46451	46451					0.07366661794185347
LIPRASLLL	9	Unmodified	_LIPRASLLL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.33428955078125	2	498.334227	994.653902	-0.48227	-0.00024033	0.22588	0.00011256	-0.25639	-0.00012777	498.33429074647324	74.367	0.55562	74.376	74.051	74.607	0.0096512					47	12	4	0	0	0	0.50848	1	9050	9050		58.782	0.97068	1	5411700			41056	10802	28319	28372	46452	46452					0.15636087133384535
LIPRNPQSN	9	Unmodified	_LIPRNPQSN_					0	0	0			REV__ENST00000361875.7_1_3:150176295-150176361:+|nuORF	REV__ENST00000361875.7_1_3:150176295-150176361:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8206787109375	2	519.788173	1037.56179	-0.91478	-0.00047549	1.9357	0.0010062	1.0209	0.00053066	519.7894633567223	80.722	0.41161	80.722	80.373	80.784	0					12	5	3	0	0	0	0.024427	1	10005	10005		34.173	12.213	1	841450	+		41057	30955	28320	28373	46453	46453					0.04451377049053917
LIPRVLHTCV	10	Unmodified	_LIPRVLHTCV_					0	0	0			REV__ENST00000539658.1_1_12:121148334-121149523:+|nuORF	REV__ENST00000539658.1_1_12:121148334-121149523:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8432006835938	2	575.841894	1149.66923	-1.2575	-0.00072414	3.1191	0.0017961	1.8616	0.001072	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.1267	1	11276	11276		29.15	1.0681	1	6251500	+		41058	34736	28321	28374	46454	46454					0.10038630658914371
LIPSLRRHIRR	11	Unmodified	_LIPSLRRHIRR_					0	0	0		TAS2R7|p.L206P|1|0.44|ENSG00000121377|chr12:10801954-10801954|A/G|missense_variant	TAS2R7|p.L206P|1|0.44|ENSG00000121377|chr12:10801954-10801954|A/G|missense_variant	TAS2R7|p.L206P|1|0.44|ENSG00000121377|chr12:10801954-10801954|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.9715881347656	3	472.972266	1415.89497	0.041171	1.9473E-05	-2.6912	-0.0012729	-2.6501	-0.0012534	472.9709299389086	49.368	1.396	49.088	48.825	50.221	-0.27977					123	36	5	0	0	0	1.1045	1	4978	4978		10.104	0.8921	1	7255500			41059	38056	28322	28375	46455	46455					0.20365715893149172
LIPVSRANLLA	11	Unmodified	_LIPVSRANLLA_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.8026123046875	2	583.866423	1165.71829	-0.2088	-0.00012191	-0.36672	-0.00021411	-0.57552	-0.00033603	583.8659776634546	54.313	0.32406	54.116	53.922	54.246	-0.19739					15	8	2	0	0	0	0.024762	1	5767	5767		18.262	0	1	205600	+		41060	21984	28323	28376	46456	46456					0.14206242219529486
LIPYFNPC	8	Carbamidomethyl (C)	_LIPYFNPC(Carbamidomethyl (C))_	LIPYFNPC(1)		LIPYFNPC(75)		0	1	0		ENST00000432627.5_1_7:48018406-48019095:-|nuORF	ENST00000432627.5_1_7:48018406-48019095:-|nuORF	ENST00000432627.5_1_7:48018406-48019095:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.253662109375	2	512.252046	1022.48954	-0.47089	-0.00024122	3.239	0.0016592	2.7681	0.001418	512.253782438945	54.125	2.449	54.125	53.655	56.104	0					199	69	5	0	0	0	0.61897	2	5918	5906;5918		74.517	10.406	1	29802000			41061	14210	28324	28377	46457;46458	46458	192				-0.020806733488939244
LIQAAKMF	8	Unmodified	_LIQAAKMF_					0	0	0		ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	ENSG00000182993|ENST00000330828|C12orf60	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.26483154296875	2	461.264956	920.515359	-0.21096	-9.7307E-05	0.42961	0.00019816	0.21865	0.00010086	461.2649360840451	92.324	2.299	92.201	91.674	93.973	-0.12242					98	53	3	0	0	0	1.0572	1	11351	11351		28.254	1.4582	1	1283700			41062	9186	28325	28378	46459	46459					0.051922208933888214
LIQAAQLLQL	10	Unmodified	_LIQAAQLLQL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.2888793945312	2	555.847699	1109.68084	0.36985	0.00020558	-1.0152	-0.00056431	-0.64538	-0.00035874	555.8471747953816	67.63	0.62006	67.654	67.389	68.009	0.023911					26	15	2	0	0	0	0.03519	1	7993	7993		82.305	0	1	281530			41063	7670	28326	28379	46460	46460					0.13039150953909484
LIQAGSEHII	10	Unmodified	_LIQAGSEHII_					0	0	0			REV__nc|ENSG00000204653|A6ND91-2|ASPDH	REV__nc|ENSG00000204653|A6ND91-2|ASPDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.805419921875	2	540.806031	1079.59751	0.52722	0.00028512	-0.73389	-0.00039689	-0.20666	-0.00011177	540.8055389815946	59.829	1.2482	59.829	59.408	60.656	0					80	33	5	0	0	0	0.85955	1	6838	6838		56.721	6.6965	1	7931700	+		41064	28628	28327	28380	46461	46461					0.060894145060501614
LIQCWGQQEF	10	Unmodified	_LIQCWGQQEF_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.2271728515625	3	417.865741	1250.57539	-0.5569	-0.00023271	3.6908	0.0015422	3.1339	0.0013095	417.86684827596946	25.184	0.48255	24.957	24.665	25.148	-0.22683					15	10	2	0	0	0	0.03519	1	1178	1178		31.634	7.3583	1	46481			41065	8051	28328	28381	46462	46462					-0.03987133234045359
LIQCWGQQEF	10	Unmodified	_LIQCWGQQEF_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	417.865741	1250.57539	1.5305	0.00063953	-0.64808	-0.00027081	0.88239	0.00036872	417.86500275939665	25.016	0.4764	24.845	24.599	25.076	-0.17151	-0.055989	-0.00324	NaN	31.634	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33261			41066	8051	28328	28381							-0.03987133234045359
LIQEEISN	8	Unmodified	_LIQEEISN_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2715759277344	2	473.248015	944.481476	-0.030065	-1.4228E-05	1.6675	0.00078916	1.6375	0.00077493	473.24927033102097	48.208	0.14613	48.021	47.94	48.086	-0.18684					5	3	2	0	0	0	0.027866	1	4750	4750		28.254	0	1	64941	+		41067	20666	28329	28382	46463	46463					0.007014709353370563
LIQFLIILGLV	11	Unmodified	_LIQFLIILGLV_					0	0	0		ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.9195556640625	2	621.415217	1240.81588	-0.56917	-0.00035369	0.38502	0.00023926	-0.18415	-0.00011443	621.4150551609636	107.25	0.29568	107.25	107.1	107.4	0.0018311					18	7	3	0	0	0	1.0483	1	13698	13698		25.574	2.0514	1	106970			41068	4408	28330	28383	46464	46464					0.20510631095658027
LIQFLIILGLV	11	Unmodified	_LIQFLIILGLV_					0	0	0		ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	621.415217	1240.81588	0.70227	0.0004364	-0.55471	-0.00034471	0.14756	9.1697E-05	621.4145528634162	107.12	0.39978	107.12	106.95	107.35	0	0.029564	-0.00033967	NaN	25.574	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116590			41069	4408	28330	28383							0.20510631095658027
LIQFLIILGLV	11	Unmodified	_LIQFLIILGLV_					0	0	0		ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	621.415217	1240.81588	0.34127	0.00021207	-0.57508	-0.00035737	-0.23382	-0.0001453	621.4148447197372	107.1	0.30704	107.1	106.92	107.23	-0.0034866	0.003748	-0.00036499	NaN	25.574	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70705			41070	4408	28330	28383							0.20510631095658027
LIQFLIILGLV	11	Unmodified	_LIQFLIILGLV_					0	0	0		ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	621.415217	1240.81588	0.14429	8.9665E-05	-0.088498	-5.4994E-05	0.055793	3.4671E-05	621.9173079476075	107.02	0.22923	106.9	106.81	107.04	-0.1238	-0.19484	0.00023975	NaN	25.574	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28325			41071	4408	28330	28383							0.20510631095658027
LIQFLKVA	8	Unmodified	_LIQFLKVA_					0	0	0		ENST00000579008.1_1_18:8412788-8413139:+|nuORF	ENST00000579008.1_1_18:8412788-8413139:+|nuORF	ENST00000579008.1_1_18:8412788-8413139:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.76910400390625	2	466.302396	930.590239	0.40505	0.00018888	-0.52054	-0.00024273	-0.11548	-5.385E-05	466.3021093570244	74.308	0.63213	74.049	73.86	74.492	-0.25887					20	14	2	0	0	0	0.027866	1	9040	9040		52.299	0	1	274610			41072	17137	28331	28384	46465	46465					0.12216726696271962
LIQFLPLTL	9	Unmodified	_LIQFLPLTL_					0	0	0			REV__ENST00000587491.5_1_17:75207779-75210102:+|nuORF	REV__ENST00000587491.5_1_17:75207779-75210102:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3219604492188	2	529.336436	1056.65832	0.41864	0.0002216	-0.030802	-1.6304E-05	0.38784	0.0002053	529.8384143176369	83.02	0.30138	82.8	82.652	82.954	-0.22015					10	6	2	0	0	0	0.024495	1	9994	9994		26.693	1.1189	1	48855	+		41073	35628	28332	28385	46466	46466					0.13225551556274695
LIQHQKTHS	9	Unmodified	_LIQHQKTHS_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.317138671875	2	546.301447	1090.58834	-0.72675	-0.00039702	2.3841	0.0013024	1.6573	0.00090541	546.3025519501023	90.163	0.99576	90.038	89.676	90.671	-0.12513					43	23	2	0	0	0	0.024436	1	11055	11055		23.042	0	1	395690			41074	4274	28333	28386	46467	46467					0.046670659403844184
LIQIIIRTT	9	Unmodified	_LIQIIIRTT_					0	0	0			REV__ENSG00000215262|ENST00000399881|KCNU1	REV__ENSG00000215262|ENST00000399881|KCNU1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.80029296875	2	535.850242	1069.68593	-1.0942	-0.00058631	-0.12905	-6.915E-05	-1.2232	-0.00065546	535.8501697019898	55.456	0.5281	55.241	55.037	55.565	-0.21551					21	14	2	0	0	0	0.024495	1	5905	5905		26.693	7.5894	1	155240	+		41075	28803	28334	28387	46468	46468					0.15387454816504942
LIQILHGAYED	11	Unmodified	_LIQILHGAYED_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	635.386474609375	2	636.335153	1270.65575	-0.97181	-0.00061839	2.8899	0.001839	1.9181	0.0012206	636.8384925134535	105.06	0.20052	104.93	104.8	105	-0.13099					11	7	2	0	0	0	0.024727	1	13075	13075		31.53	0	1	24143	+		41076	20012	28335	28388	46469	46469					0.031250513606664754
LIQKDRTF	8	Unmodified	_LIQKDRTF_					0	0	0		ENST00000491834.5_1_3:3197887-3221343:-|nuORF;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000478353.1_1_3:3215741-3221371:-|nuORF;ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF	ENST00000491834.5_1_3:3197887-3221343:-|nuORF	ENST00000491834.5_1_3:3197887-3221343:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2810363769531	2	510.795466	1019.57638	-0.11205	-5.7236E-05	1.8809	0.00096075	1.7688	0.00090352	510.7950411557417	62	0.86039	61.774	61.189	62.049	-0.22663					59	22	4	0	0	0	0.027866	1	7110	7110		38.806	3.6054	1	2532300			41077	3331	28336	28389	46470	46470					0.06737449197180467
LIQKDTEKN	9	Unmodified	_LIQKDTEKN_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8392944335938	2	544.800946	1087.58734	-0.78391	-0.00042708	-4.1771	-0.0022757	-4.961	-0.0027028	544.7984045599173	73.006	0.94627	73.016	72.652	73.598	0.0096588					59	23	3	0	0	0	0.020356	1	8805	8805		63.534	0	1	1557000	+		41078	28200	28337	28390	46471	46471					0.04704806780819126
LIQKKPVS	8	Unmodified	_LIQKKPVS_					0	0	0			REV__ENST00000276654.9_1_8:105510067-105510277:-|nuORF	REV__ENST00000276654.9_1_8:105510067-105510277:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2589111328125	2	456.797478	911.580402	-0.43792	-0.00020004	0.30132	0.00013764	-0.13659	-6.2396E-05	456.7974562736244	28.417	0.33913	28.417	28.191	28.53	0					12	7	2	0	0	0	0.027866	1	1641	1641		53.351	16.192	1	58276	+		41079	29854	28338	28391	46472	46472					0.1210753869089558
LIQKLFET	8	Unmodified	_LIQKLFET_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.7667236328125	2	496.294768	990.574983	-0.4296	-0.00021321	-1.5705	-0.00077942	-2.0001	-0.00099263	496.29434433358756	62.433	0.35078	62.212	61.925	62.276	-0.22097					24	8	4	0	0	0	0.027866	1	7015	7015		47.916	7.343	1	573410	+		41080	28220	28339	28392	46473	46473					0.0793181510841805
LIQKRSGPAQ	10	Unmodified	_LIQKRSGPAQ_					0	0	0		ENST00000441384.5_1_3:47852163-47883242:+|nuORF;ENST00000445061.5_1_3:47852163-47868840:+|nuORF;ENST00000476446.5_1_3:47852163-47863615:+|nuORF;ENST00000492893.5_1_3:47852163-47866315:+|nuORF	ENST00000441384.5_1_3:47852163-47883242:+|nuORF	ENST00000441384.5_1_3:47852163-47883242:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.798828125	2	549.324922	1096.63529	-1.6441	-0.00090312	1.5243	0.00083734	-0.11975	-6.5779E-05	549.325691071167	22.048	0.57973	22.12	21.88	22.46	0.072571					30	11	3	0	0	0	0.03519	1	668	668		20.947	2.6225	1	181150			41081	14360	28340	28393	46474	46474					0.0908392549151813
LIQLATLCL	9	Unmodified	_LIQLATLCL_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|52|3|sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|52|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3009948730469	2	494.298996	986.583439	0.003029	1.4972E-06	3.2604	0.0016116	3.2634	0.0016131	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	0.90698	1	12390	12390		31.955	2.8053	1	42897000	+		41082	37692	28341	28394	46475	46475					0.08961045753392227
LIQLILVLVIL	11	Unmodified	_LIQLILVLVIL_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	MSMS	OPSCC_40_ClassI_Rep-3	6	417.29644775390625	3	417.300104	1248.87848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.66	1	108.5	108	109	-0.15141								0	0	0	1.7531	1	13411	13411		3.6191	1.5911	1		+		41083	22259	28342	28395	46476	46476					0.2639977716382873
LIQLLRTSA	9	Unmodified	_LIQLLRTSA_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.81915283203125	2	507.818941	1013.62333	0.30683	0.00015581	-0.71172	-0.00036142	-0.40489	-0.00020561	507.818447851776	22.912	0.73805	22.71	22.499	23.237	-0.20193					29	15	3	0	0	0	0.42604	1	865	865		64.207	5.4253	1	366590	+		41084	21403	28343	28396	46477	46477					0.11706308748318861
LIQLLRTSA	9	Unmodified	_LIQLLRTSA_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	507.818941	1013.62333	1.0483	0.00053234	-1.3935	-0.00070766	-0.34524	-0.00017532	507.81808573523904	23.019	0.50624	22.827	22.617	23.124	-0.19117	0.045239	-0.00073001	NaN	64.207	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424400	+		41085	21403	28343	28396							0.11706308748318861
LIQLQEKF	8	Unmodified	_LIQLQEKF_					0	0	0		ENST00000333891.13_1_7:82467627-82470818:-|nuORF	ENST00000333891.13_1_7:82467627-82470818:-|nuORF	ENST00000333891.13_1_7:82467627-82470818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8016357421875	2	509.800217	1017.58588	0.032589	1.6614E-05	-0.60496	-0.00030841	-0.57237	-0.00029179	509.7992687125416	88.184	0.23938	88.052	87.955	88.194	-0.13135					8	5	2	0	0	0	0.5947	1	10771	10771		76.774	2.5191	1	296880			41086	12372	28344	28397	46478	46478					0.07779217482709555
LIQLVEFY	8	Unmodified	_LIQLVEFY_					0	0	0		nc|ENSG00000115290|Q14449-2|GRB14;ENSG00000115290|ENST00000263915|GRB14	nc|ENSG00000115290|Q14449-2|GRB14	nc|ENSG00000115290|Q14449-2|GRB14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.78466796875	2	512.789318	1023.56408	-0.28426	-0.00014577	-3.7822	-0.0019395	-4.0665	-0.0020852	512.7872521722348	66.624	0.47101	66.376	66.021	66.492	-0.2484					34	12	4	0	0	0	0.32162	2	7637	7637;7649		108.09	25.782	1	2668400			41087	3428	28345	28398	46479;46480	46479					0.053244127341372405
LIQLVEFY	8	Unmodified	_LIQLVEFY_					0	0	0		nc|ENSG00000115290|Q14449-2|GRB14;ENSG00000115290|ENST00000263915|GRB14	nc|ENSG00000115290|Q14449-2|GRB14	nc|ENSG00000115290|Q14449-2|GRB14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7869262695312	2	512.789318	1023.56408	-0.63204	-0.0003241	-3.4743	-0.0017816	-4.1064	-0.0021057	512.7874354372112	66.57	0.51233	66.346	66.026	66.539	-0.22374					35	13	4	0	0	0	0.26064	1	7645	7645		128.86	36.67	1	2767000			41088	3428	28345	28398	46481	46481					0.053244127341372405
LIQRFPVT	8	Unmodified	_LIQRFPVT_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.25042724609375	2	487.295102	972.575651	-0.097403	-4.7464E-05	2.3515	0.0011459	2.2541	0.0010984	487.29602086017115	32.912	0.38055	32.975	32.766	33.147	0.062885					23	9	3	0	0	0	0.027866	1	2297	2297		40.573	1.7665	1	184970			41089	1097	28346	28399	46482	46482					0.08826654548136048
LIQRSEPL	8	Unmodified	_LIQRSEPL_					0	0	0		SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3006591796875	2	478.282192	954.549831	-0.71191	-0.00034049	0.81394	0.00038929	0.10203	4.8798E-05	478.2824136207874	37.991	0.54953	37.991	37.735	38.284	0					45	16	4	0	0	0	0.027866	1	3127	3127		138.24	4.4296	1	2425300			41090	38050	28347	28400	46483	46483					0.07073760305854648
LIQRSEPL	8	Unmodified	_LIQRSEPL_					0	0	0		SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3004455566406	2	478.282192	954.549831	-0.80779	-0.00038635	0.99094	0.00047395	0.18315	8.7597E-05	478.28246664989996	37.939	0.80382	37.857	37.57	38.374	-0.082516					60	22	4	0	0	0	0.027866	1	3085	3085		111.65	15.458	1	2278200			41091	38050	28347	28400	46484	46484					0.07073760305854648
LIQRSEPL	8	Unmodified	_LIQRSEPL_					0	0	0		SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	SYNE2|p.K6313R|1|0.56|ENSG00000054654|chr14:64212887-64212887|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3004455566406	2	478.282192	954.549831	-1.3326	-0.00063738	1.307	0.00062513	-0.0256	-1.2244E-05	478.28276205859197	38.114	0.58251	38.141	37.782	38.365	0.027275					35	16	3	0	0	0	0.027866	1	3072	3072		138.24	17.621	1	2228100			41092	38050	28347	28400	46485	46485					0.07073760305854648
LIQSRRGK	8	Unmodified	_LIQSRRGK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.76397705078125	2	479.30125	956.587947	0.044205	2.1188E-05	2.8347	0.0013587	2.8789	0.0013799	479.30251847880174	73.79	0.44379	73.519	73.167	73.611	-0.27126					18	11	2	0	0	0	0.027866	1	8939	8939		18.324	3.4595	1	875160			41093	6477	28348	28401	46486	46486					0.10791691011183957
LIQTFPNQL	9	Unmodified	_LIQTFPNQL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.3001708984375	2	537.303124	1072.5917	-1.0248	-0.00055065	-2.6029	-0.0013985	-3.6277	-0.0019492	537.3015337813486	56.777	1.005	56.613	56.313	57.318	-0.16431					57	27	4	0	0	0	0.39228	1	6299	6299		66.429	4.3219	1	3827000			41094	3841	28349	28402	46487	46487					0.058303159943761784
LIQTYELN	8	Unmodified	_LIQTYELN_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3;ENST00000542173.1_1_17:43195641-43196287:-|nuORF	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7923889160156	2	497.266207	992.517862	0.20178	0.00010034	-0.89051	-0.00044282	-0.68873	-0.00034248	497.2655935838968	71.269	0.83619	71.28	70.854	71.691	0.010735					35	21	2	0	0	0	0.027866	1	8555	8555		45.952	5.3793	1	223510			41095	6891	28350	28403	46488	46488					0.021303478320419345
LIQVLIMN	8	Unmodified	_LIQVLIMN_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2881164550781	2	472.285889	942.557224	0.20114	9.4994E-05	3.3876	0.0015999	3.5887	0.0016949	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	1.0239	1	12028	12028		33.516	3.674	1	52660000	+		41096	20705	28351	28404	46489	46489					0.08364776581913702
LIQVYEAFI	9	Unmodified	_LIQVYEAFI_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.2794799804688	2	548.307875	1094.6012	-0.53914	-0.00029561	3.7037	0.0020308	3.1646	0.0017352	548.3097411297504	77.012	1.0413	77.025	76.777	77.819	0.013504					50	24	3	0	0	0	0.024294	1	9536	9536		55.504	9.532	1	1456000			41097	5716	28352	28405	46490	46490					0.05768084279884533
LIQVYEAFI	9	Unmodified	_LIQVYEAFI_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.307875	1094.6012	-0.041234	-2.2609E-05	3.0883	0.0016934	3.0471	0.0016708	548.3094493770611	76.986	0.9536	76.986	76.678	77.632	0	0.048278	-0.00034354	NaN	45.952	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1663000			41098	5716	28352	28405							0.05768084279884533
LIQVYEAFI	9	Unmodified	_LIQVYEAFI_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.307875	1094.6012	0.27456	0.00015054	3.1466	0.0017253	3.4211	0.0018758	548.309446838207	77.143	0.6301	76.875	76.424	77.054	-0.26806	-0.062678	-0.00027969	NaN	45.952	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555140			41099	5716	28352	28405							0.05768084279884533
LIQVYEAFI	9	Unmodified	_LIQVYEAFI_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.307875	1094.6012	0.47824	0.00026222	2.7643	0.0015157	3.2425	0.0017779	548.3090782391309	77.164	0.54734	76.913	76.484	77.032	-0.25162	-0.025094	-0.00069892	NaN	45.952	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519390			41100	5716	28352	28405							0.05768084279884533
LIQWSYLN	8	Unmodified	_LIQWSYLN_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.2791137695312	2	518.776742	1035.53893	-0.4777	-0.00024782	2.3387	0.0012132	1.861	0.00096543	519.2790776020206	62.108	0.68549	61.881	61.534	62.219	-0.22663					65	18	5	0	0	0	0.94517	1	7176	7176		45.952	5.1738	1	5605500	+		41101	24415	28353	28406	46491	46491					0.022583579315551106
LIRAADLTL	9	Unmodified	_LIRAADLTL_					0	0	0		nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	nc|ENSG00000188372|P21754-2|ZP3	nc|ENSG00000188372|P21754-2|ZP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3055419921875	2	493.305667	984.596781	1.4181	0.00069955	-1.9008	-0.00093769	-0.48274	-0.00023814	493.30472465707845	59.354	0.87406	59.154	58.853	59.727	-0.20016					69	23	4	0	0	0	0.80658	1	6763	6763		38.806	1.647	1	9720000			41102	9715	28354	28407	46492	46492					0.10386619856978996
LIRASALFVT	10	Unmodified	_LIRASALFVT_					0	0	0			REV__ENST00000528107.5_2_11:33061718-33061820:+|nuORF	REV__ENST00000528107.5_2_11:33061718-33061820:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2825927734375	2	545.834591	1089.65463	0.0015145	8.2669E-07	-0.81452	-0.0004446	-0.81301	-0.00044377	546.3355582987906	51.8	0.9455	51.616	51.449	52.395	-0.18404					29	24	2	0	0	0	0.03519	1	5310	5310		22.58	6.5729	1	136330	+		41103	34488	28355	28408	46493	46493					0.11338881782398857
LIRECLNELA	10	Carbamidomethyl (C)	_LIREC(Carbamidomethyl (C))LNELA_	LIREC(1)LNELA		LIREC(58)LNELA		0	1	0			REV__ENSG00000166997|ENST00000262932|CNPY4	REV__ENSG00000166997|ENST00000262932|CNPY4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	615.829345703125	2	615.82918	1229.64381	0.25455	0.00015676	0.29637	0.00018251	0.55092	0.00033927	615.8292512725548	98.587	1.4271	98.597	98.19	99.617	0.010231					87	32	3	0	0	0	0.83673	1	12553	12553		58.23	15.366	1	911620	+		41104	26095	28356	28409	46494	46494	345				0.03817111345824742
LIRECLNELA	10	Carbamidomethyl (C)	_LIREC(Carbamidomethyl (C))LNELA_	LIREC(1)LNELA		LIREC(44)LNELA		0	1	0			REV__ENSG00000166997|ENST00000262932|CNPY4	REV__ENSG00000166997|ENST00000262932|CNPY4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	615.8294067382812	2	615.82918	1229.64381	-0.26249	-0.00016165	0.72417	0.00044597	0.46168	0.00028432	615.8294527197208	98.711	1.4697	98.707	98.307	99.777	-0.0038834					85	33	3	0	0	0	1.0122	1	12533	12533		44.377	6.5657	1	889840	+		41105	26095	28356	28409	46495	46495	345				0.03817111345824742
LIRFRVKV	8	Unmodified	_LIRFRVKV_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C;FAM120C|p.R250Kfs*31|1|0.08|ENSG00000184083|chrX:54159567-54159568|-/ATATT|frameshift_variant	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3134155273438	2	515.847836	1029.68112	-0.1341	-6.9173E-05	-2.8031	-0.001446	-2.9372	-0.0015151	515.8463594876345	68.231	0.15634	68.25	68.158	68.314	0.018913					5	3	2	0	0	0	0.027866	1	8099	8099		8.8223	0	1	42357			41106	9305	28357	28410	46496	46496					0.16746615464421666
LIRFWVLQIIF	11	Unmodified	_LIRFWVLQIIF_					0	0	0		GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant;ENSG00000135355|ENST00000369352|GJA10	GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	GJA10|p.G522Vfs*10|1|0.1|ENSG00000135355|chr6:89896032-89896033|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.64678955078125	3	483.298986	1446.87513	-0.12595	-6.0871E-05	-1.3358	-0.00064558	-1.4617	-0.00070645	483.2978589862261	46.912	0.17083	46.719	46.644	46.814	-0.19387					6	4	2	0	0	0	0.024804	1	4546	4546		20.837	0	1	85172			41107	4882	28358	28411	46497	46497					0.16956527109823583
LIRGGRDV	8	Unmodified	_LIRGGRDV_					0	0	0			REV__ENST00000325327.3_1_19:2429314-2429548:-|nuORF	REV__ENST00000325327.3_1_19:2429314-2429548:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.2667236328125	2	443.266876	884.519199	0.58884	0.00026101	-0.44474	-0.00019714	0.14409	6.3871E-05	443.26659446344723	85.917	1.0344	85.78	85.452	86.487	-0.13734					64	23	4	0	0	0	1.0009	1	10420	10420		37.159	1.9584	1	878650	+		41108	30387	28359	28412	46498	46498					0.07232026711460549
LIRGNAAAKF	10	Unmodified	_LIRGNAAAKF_					0	0	0			REV__ENSG00000143772|ENST00000429204|ITPKB	REV__ENSG00000143772|ENST00000429204|ITPKB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2822875976562	2	530.816733	1059.61891	-1.4454	-0.00076725	-1.2717	-0.00067506	-2.7172	-0.0014423	530.8165093779452	39.779	0.21989	39.667	39.534	39.754	-0.11222					8	5	2	0	0	0	0.03519	1	3411	3411		44.117	3.5442	1	64628	+		41109	24280	28360	28413	46499	46499					0.091488443254093
LIRGSVGLLP	10	Unmodified	_LIRGSVGLLP_					0	0	0			REV__ENST00000488642.6_1_12:1034631-1036165:-|nuORF	REV__ENST00000488642.6_1_12:1034631-1036165:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.30810546875	2	512.829309	1023.64407	-0.79096	-0.00040563	-0.16674	-8.5512E-05	-0.95771	-0.00049114	512.8292146582212	54.413	0.65001	54.413	54.144	54.794	0					45	18	3	0	0	0	0.03519	1	5980	5980		74.255	10.048	1	933410	+		41110	29390	28361	28414	46500	46500					0.13318899127989425
LIRIPDTMF	9	Unmodified	_LIRIPDTMF_					0	0	0			REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7828979492188	2	553.307352	1104.60015	-0.23442	-0.0001297	4.2402	0.0023461	4.0058	0.0022164	553.3096146324002	41.819	0.43753	41.589	41.394	41.832	-0.23029					23	11	3	0	0	0	0.024405	1	3673	3673		44.117	0	1	213780	+		41111	24103	28362	28415	46501	46501					0.052035466393363095
LIRIPDTMF	9	Unmodified	_LIRIPDTMF_					0	0	0			REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.307352	1104.60015	-0.13324	-7.3725E-05	5.9004	0.0032648	5.7672	0.003191	553.8125229021551	41.646	0.32619	41.669	41.564	41.89	0.023003	0.092864	0.001775	NaN	44.117	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142950	+		41112	24103	28362	28415							0.052035466393363095
LIRKDDLQ	8	Unmodified	_LIRKDDLQ_					0	0	0		ENST00000467703.1_1_3:113796335-113796386:+|nuORF	ENST00000467703.1_1_3:113796335-113796386:+|nuORF	ENST00000467703.1_1_3:113796335-113796386:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.79302978515625	2	500.792924	999.571294	0.014314	7.1682E-06	-0.28256	-0.0001415	-0.26825	-0.00013434	500.79269802473954	51.856	0.88568	51.737	51.357	52.243	-0.11875					87	23	6	0	0	0	0.59392	1	5339	5339		76.847	0.072494	1	10550000			41113	14851	28363	28416	46502	46502					0.07149145334562945
LIRKDDLQ	8	Unmodified	_LIRKDDLQ_					0	0	0		ENST00000467703.1_1_3:113796335-113796386:+|nuORF	ENST00000467703.1_1_3:113796335-113796386:+|nuORF	ENST00000467703.1_1_3:113796335-113796386:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.792724609375	2	500.792924	999.571294	0.02379	1.1914E-05	-0.68184	-0.00034146	-0.65805	-0.00032955	500.7924977441126	51.965	1.056	51.781	51.258	52.314	-0.18404					99	27	7	0	0	0	0.42327	1	5345	5345		94.006	3.2298	1	10537000			41114	14851	28363	28416	46503	46503					0.07149145334562945
LIRKHTHLF	9	Unmodified	_LIRKHTHLF_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MSMS	OPSCC_40_ClassI_Rep-2	5	582.8556518554688	2	582.85365	1163.69275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.23	1	103.11	102.61	103.61	-0.12783								0	0	0	0.64601	1	12849	12849		31.955	4.0726	1				41115	4674	28364	28417	46504	46504					0.11744812487722811
LIRKTVEV	8	Unmodified	_LIRKTVEV_					0	0	0			REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7927551269531	2	479.30821	956.601866	-0.30269	-0.00014508	-0.37362	-0.00017908	-0.67631	-0.00032416	479.3078097134007	64.53	0.5064	64.275	63.959	64.465	-0.25562					17	12	2	0	0	0	0.027866	1	7278	7278		12.207	0	1	121010	+		41116	36346	28365	28418	46505	46505					0.12182923719603878
LIRKTVEV	8	Unmodified	_LIRKTVEV_					0	0	0			REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.30821	956.601866	-0.36032	-0.00017271	0.5515	0.00026434	0.19118	9.1633E-05	479.3083151664637	64.511	0.60095	64.248	64.012	64.613	-0.2626	-0.0003654	0.00081376	NaN	10.866	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100600	+		41117	36346	28365	28418							0.12182923719603878
LIRKTVEV	8	Unmodified	_LIRKTVEV_					0	0	0			REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.30821	956.601866	0.73398	0.0003518	-0.63447	-0.00030411	0.09951	4.7696E-05	479.30774229674915	64.235	0.59652	64.28	64.046	64.642	0.045502	0.031778	-0.00032313	NaN	10.866	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1399100	+		41118	36346	28365	28418							0.12182923719603878
LIRKTVEV	8	Unmodified	_LIRKTVEV_					0	0	0			REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	REV__M1AP|p.G181R|1|0.3|ENSG00000159374|chr2:74607109-74607109|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.30821	956.601866	-0.15308	-7.3374E-05	-0.34731	-0.00016647	-0.50039	-0.00023984	479.3078495532564	64.446	0.50973	64.244	63.951	64.461	-0.20254	-0.0048201	-4.7853E-05	NaN	10.866	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231040	+		41119	36346	28365	28418							0.12182923719603878
LIRMVFQQV	9	Unmodified	_LIRMVFQQV_					0	0	0		nc|ENSG00000066855|Q15390-2|MTFR1;ENSG00000066855|ENST00000262146|MTFR1;ENST00000424808.6_1_8:66582187-66620357:+|nuORF;MTFR1|p.R7L|1|0.1|ENSG00000066855|chr8:65669972-65669972|G/T|missense_variant;ENST00000523170.5_1_8:66582187-66594293:+|nuORF;ENST00000522239.5_1_8:66582187-66594598:+|nuORF	nc|ENSG00000066855|Q15390-2|MTFR1	nc|ENSG00000066855|Q15390-2|MTFR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.330078125	2	567.328619	1132.64269	-0.48805	-0.00027688	2.2354	0.0012682	1.7474	0.00099135	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.98128	1	11310	11310		24.203	0	1	14972000			41120	1347	28366	28419	46506	46506					0.08166941767581193
LIRNLVTDL	9	Unmodified	_LIRNLVTDL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2482299804688	2	528.824224	1055.63389	0.25621	0.00013549	-0.10125	-5.3545E-05	0.15496	8.1947E-05	528.8236831643995	59.491	0.71292	59.312	58.913	59.626	-0.17948					26	17	2	0	0	0	0.024427	1	6542	6542		34.173	0	1	437730			41121	7670	28367	28420	46507	46507					0.10830291402771763
LIRNLVTDL	9	Unmodified	_LIRNLVTDL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.824224	1055.63389	0.34137	0.00018053	-1.2002	-0.0006347	-0.85884	-0.00045418	528.8235052355933	59.353	0.98617	59.353	58.86	59.846	0	-0.007999	-0.00013201	NaN	19.997	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731180			41122	7670	28367	28420							0.10830291402771763
LIRNLVTDL	9	Unmodified	_LIRNLVTDL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.824224	1055.63389	0.60662	0.00032079	-1.3533	-0.00071564	-0.74665	-0.00039485	528.8235757602065	59.576	0.80378	59.375	58.923	59.727	-0.20016	0.014601	-0.00029389	NaN	19.997	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1016400			41123	7670	28367	28420							0.10830291402771763
LIRNLVTDL	9	Unmodified	_LIRNLVTDL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.824224	1055.63389	0.24467	0.00012939	-1.2625	-0.00066765	-1.0178	-0.00053826	528.8236642046796	59.274	0.84199	59.36	58.921	59.763	0.085682	-0.0013919	-0.00019791	NaN	19.997	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824370			41124	7670	28367	28420							0.10830291402771763
LIRNLVTDL	9	Unmodified	_LIRNLVTDL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.824224	1055.63389	0.67582	0.00035739	-1.2064	-0.00063795	-0.53053	-0.00028056	528.8235180563382	59.577	0.5574	59.38	59.132	59.689	-0.19742	0.018827	-0.00013851	NaN	19.997	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469470			41125	7670	28367	28420							0.10830291402771763
LIRNLVTDL	9	Unmodified	_LIRNLVTDL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.824224	1055.63389	0.22712	0.00012011	-0.2449	-0.00012951	-0.017773	-9.399E-06	528.8237913835877	59.634	0.47971	59.386	59.13	59.61	-0.24842	0.02494	0.00087837	NaN	19.997	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458170			41126	7670	28367	28420							0.10830291402771763
LIRQHAFGMAE	11	Unmodified	_LIRQHAFGMAE_					0	0	0		nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	nc|ENSG00000157152|Q92777-2|SYN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.89007568359375	3	424.888768	1271.64448	1.5067	0.0006402	1.4179	0.00060246	2.9247	0.0012427	424.8895039089047	20.322	2.5821	20.391	19.972	22.554	0.068901					147	52	6	0	0	0	1.0233	1	534	534		31.634	7.4025	1	3393500			41127	6579	28368	28421	46508	46508					0.01951950785542067
LIRRIIGLS	9	Unmodified	_LIRRIIGLS_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3027954101562	2	520.850576	1039.6866	-0.69583	-0.00036242	0.17371	9.0478E-05	-0.52212	-0.00027195	520.850449958519	60.517	0.63748	60.304	60.118	60.756	-0.2134					23	16	2	0	0	0	0.024495	1	6997	6997		42.396	13.247	1	157750			41128	8945	28369	28422	46509	46509					0.16834294256227622
LIRRRHRL	8	Unmodified	_LIRRRHRL_					0	0	0			REV__USP44|p.W151R|1|0.29|ENSG00000136014|chr12:95533806-95533806|A/G|missense_variant	REV__USP44|p.W151R|1|0.29|ENSG00000136014|chr12:95533806-95533806|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3109130859375	2	560.370333	1118.72611	-1.081	-0.00060579	-0.94521	-0.00052967	-2.0263	-0.0011355	560.3702779034016	51.494	0.30375	51.581	51.411	51.715	0.087006					11	8	2	0	0	0	0.027866	1	5404	5404		29.842	4.3914	1	174590	+		41129	37770	28370	28423	46510	46510					0.17149859050323357
LIRSGLPA	8	Unmodified	_LIRSGLPA_					0	0	0			REV__ENSG00000123600|ENST00000375258|METTL8	REV__ENSG00000123600|ENST00000375258|METTL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.76055908203125	2	413.760895	825.507237	0.1025	4.2409E-05	-0.0075458	-3.1222E-06	0.094952	3.9287E-05	413.7607466503138	48.526	0.94002	48.344	48.02	48.96	-0.18206					59	25	4	0	0	0	0.65272	1	4807	4807		71.378	0.082209	1	3214700	+		41130	22710	28371	28424	46511	46511					0.08750409968286021
LIRSGLPA	8	Unmodified	_LIRSGLPA_					0	0	0			REV__ENSG00000123600|ENST00000375258|METTL8	REV__ENSG00000123600|ENST00000375258|METTL8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.760895	825.507237	-0.72718	-0.00030088	0.92514	0.00038279	0.19795	8.1906E-05	413.76113348279466	48.369	0.8045	48.272	48.002	48.806	-0.097553	-0.073138	0.00014842	NaN	71.378	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1965600	+		41131	22710	28371	28424							0.08750409968286021
LIRSGLPA	8	Unmodified	_LIRSGLPA_					0	0	0			REV__ENSG00000123600|ENST00000375258|METTL8	REV__ENSG00000123600|ENST00000375258|METTL8	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	413.760895	825.507237	-1.0474	-0.00043337	1.1318	0.0004683	0.084427	3.4933E-05	413.76123361062554	48.699	0.86143	48.419	48.112	48.973	-0.27977	0.074274	0.00031945	NaN	71.378	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2431700	+		41132	22710	28371	28424							0.08750409968286021
LIRSGLPA	8	Unmodified	_LIRSGLPA_					0	0	0			REV__ENSG00000123600|ENST00000375258|METTL8	REV__ENSG00000123600|ENST00000375258|METTL8	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	413.760895	825.507237	0.1025	4.2409E-05	-0.0075458	-3.1222E-06	0.094952	3.9287E-05	413.7607466503138	48.526	0.94002	48.344	48.02	48.96	-0.18206	-0.0011362	-0.00062339	NaN	71.378	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3214700	+		41133	22710	28371	28424							0.08750409968286021
LIRSIYAISA	10	Unmodified	_LIRSIYAISA_					0	0	0			REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8297729492188	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0271	1	11284	11284		42.396	1.618	1	4870500	+		41134	21953	28372	28425	46512	46512					0.10094577919812764
LIRSIYAISA	10	Unmodified	_LIRSIYAISA_					0	0	0			REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8297729492188	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0271	1	11232	11232		42.396	3.1433	1	4967900	+		41135	21953	28372	28425	46513	46513					0.10094577919812764
LIRSIYAISA	10	Unmodified	_LIRSIYAISA_					0	0	0			REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	REV__ENST00000514824.5_1_6:11714744-11735835:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830322265625	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.82838	1	11015	11015		58.782	5.4305	1	6921700	+		41136	21953	28372	28425	46514	46514					0.10094577919812764
LIRSSQQSFG	10	Unmodified	_LIRSSQQSFG_					0	0	0			REV__ENST00000389063.2_1_5:112343701-112343737:+|nuORF	REV__ENST00000389063.2_1_5:112343701-112343737:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2702026367188	2	561.798737	1121.58292	-0.3348	-0.00018809	-0.1112	-6.247E-05	-0.44599	-0.00025056	561.7984828468665	26.951	0.75594	26.783	26.301	27.057	-0.16816					42	17	4	0	0	0	0.03519	1	1377	1377		51.335	0	1	448880	+		41137	31565	28373	28426	46515	46515					0.026993423579142473
LIRSVERGLK	10	Unmodified	_LIRSVERGLK_					0	0	0			REV__nc|ENSG00000204979|Q5J8X5-3|MS4A13	REV__nc|ENSG00000204979|Q5J8X5-3|MS4A13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.7212524414062	2	585.869497	1169.72444	-1.1027	-0.00064604	0.64454	0.00037762	-0.45817	-0.00026843	585.8701101427964	33.407	0.27083	33.207	33.094	33.365	-0.20019					11	6	3	0	0	0	0.03519	1	2364	2364		18.262	0	1	63391	+		41138	28652	28374	28427	46516	46516					0.1463676045102602
LIRSWLGES	9	Unmodified	_LIRSWLGES_					0	0	0			REV__ENST00000463823.5_1_6:31940225-31947331:+|nuORF	REV__ENST00000463823.5_1_6:31940225-31947331:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2821044921875	2	530.792924	1059.57129	-0.17748	-9.4203E-05	-1.2034	-0.00063875	-1.3809	-0.00073296	530.7920180605338	59.942	0.56376	59.694	59.533	60.097	-0.24841					26	14	3	0	0	0	0.024506	1	6614	6614		30.504	8.5438	1	1263100	+		41139	32948	28375	28428	46517	46517					0.04389145334562272
LIRTVTLGF	9	Unmodified	_LIRTVTLGF_					0	0	0			REV__ENSG00000140519|ENST00000268122|RHCG	REV__ENSG00000140519|ENST00000268122|RHCG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7645568847656	2	510.316035	1018.61752	-0.37233	-0.00019001	-0.33694	-0.00017194	-0.70927	-0.00036195	510.31590708053903	25.709	0.25183	25.539	25.33	25.581	-0.17078					9	5	2	0	0	0	0.023417	1	1242	1242		40.778	0	1	48652	+		41140	24024	28376	28429	46518	46518					0.10895210236662933
LIRVLQPVLKR	11	Unmodified	_LIRVLQPVLKR_					0	0	0			REV__ENSG00000166747|ENST00000299980|AP1G1	REV__ENSG00000166747|ENST00000299980|AP1G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.6358947753906	3	445.638001	1333.89217	-0.52599	-0.0002344	-3.814	-0.0016997	-4.34	-0.0019341	445.6361772627151	40.212	1.7286	40.062	39.629	41.358	-0.1497					166	45	5	0	0	0	1.1077	1	3458	3458		9.2118	0.41249	1	4197600	+		41141	26051	28377	28430	46519	46519					0.23858447715633702
LIRYILEM	8	Unmodified	_LIRYILEM_					0	0	0		nc|ENSG00000069188|Q58EX2-2|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;SDK2|p.R2017Gfs*28|1|0.24|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.8023681640625	2	525.804445	1049.59434	-0.89928	-0.00047285	-2.9403	-0.001546	-3.8396	-0.0020189	525.8029813282415	101.69	1.3686	101.69	101.28	102.65	0					75	30	4	0	0	0	0.75307	1	13000	13000		62.978	8.2138	1	2025900			41142	18071	28378	28431	46520	46520					0.07152448127681055
LIRYIVLHFGR	11	Unmodified	_LIRYIVLHFGR_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7995910644531	3	462.950468	1385.82957	-0.35938	-0.00016637	3.4873	0.0016144	3.1279	0.0014481	462.95212419704336	103.28	0.59181	103.28	103.04	103.63	0					25	13	3	0	0	0	0.024828	1	13220	13220		5.6988	0	1	201960			41143	163	28379	28432	46521	46521					0.1520930164742822
LISDQDFF	8	Unmodified	_LISDQDFF_					0	0	0		ENSG00000176018|ENST00000315948|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	ENSG00000176018|ENST00000315948|LYSMD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7840576171875	2	492.737283	983.460012	-0.37631	-0.00018542	3.0798	0.0015175	2.7035	0.0013321	492.7378215620635	46.771	0.43473	46.577	46.415	46.85	-0.19387					24	12	3	0	0	0	0.027866	1	4521	4521		63.306	15.649	1	167410			41144	8604	28380	28433	46522	46522					-0.03237914093381278
LISEDWALL	9	Unmodified	_LISEDWALL_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8077392578125	2	530.289682	1058.56481	0.15032	7.9714E-05	2.3344	0.0012379	2.4847	0.0013176	530.2910461426995	71.714	0.65201	71.425	71.036	71.688	-0.28857					21	16	2	0	0	0	0.024466	1	8693	8693		33.516	12.569	1	162980			41145	9236	28381	28434	46523	46523					0.037872073831977104
LISELAKKV	9	Unmodified	_LISELAKKV_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7662353515625	2	500.823692	999.632832	0.17172	8.6001E-05	-1.6878	-0.00084531	-1.5161	-0.00075931	500.8232447482492	74.519	0.51616	74.256	74.054	74.57	-0.26326					15	11	2	0	0	0	0.024487	1	8790	8790		17.365	9.1337	1	94562	+		41146	26976	28382	28435	46524	46524					0.13300077033841262
LISELQHAM	9	Oxidation (M)	_LISELQHAM(Oxidation (M))_		LISELQHAM(1)		LISELQHAM(79)	0	0	1			REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2715454101562	2	529.270967	1056.52738	0.031491	1.6667E-05	0.17649	9.3413E-05	0.20798	0.00011008	529.2710381803324	89.579	0.67082	89.557	89.283	89.954	-0.021645					32	15	3	0	0	0	0.27161	1	11275	11275		79.451	7.5735	1	995080	+		41147	29712	28383	28436	46525	46525		860			0.0013779284590782481
LISELQHAM	9	Oxidation (M)	_LISELQHAM(Oxidation (M))_					0	0	1			REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.270967	1056.52738	-0.92287	-0.00048845	0.8959	0.00047417	-0.026969	-1.4274E-05	529.2715431574047	89.606	0.70142	89.606	89.313	90.015	0	-0.010291	0.00066161	NaN	79.451	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	960590	+		41148	29712	28383	28436				860			0.0013779284590782481
LISELQHAM	9	Oxidation (M)	_LISELQHAM(Oxidation (M))_					0	0	1			REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	529.270967	1056.52738	0.031491	1.6667E-05	0.17649	9.3413E-05	0.20798	0.00011008	529.2710381803324	89.579	0.67082	89.557	89.283	89.954	-0.021645	-0.059224	-9.9905E-05	NaN	79.451	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995080	+		41149	29712	28383	28436				860			0.0013779284590782481
LISELQHAM	9	Oxidation (M)	_LISELQHAM(Oxidation (M))_					0	0	1			REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	REV__ENST00000264110.6_1_2:176001189-176015807:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.270967	1056.52738	0.085687	4.5352E-05	0.16873	8.9304E-05	0.25442	0.00013466	529.2710218309545	89.673	0.69946	89.686	89.383	90.082	0.013443	0.069515	-0.00010812	NaN	79.451	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944810	+		41150	29712	28383	28436				860			0.0013779284590782481
LISFHSESCV	10	Unmodified	_LISFHSESCV_					0	0	0			REV__ENSG00000106125|ENST00000265299|MINDY4	REV__ENSG00000106125|ENST00000265299|MINDY4	MSMS	OPSCC_40_ClassI_Rep-2	5	561.270263671875	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.662	1	26.493	25.993	26.993	-0.16816								0	0	0	0.74254	1	1401	1401		38.806	1.647	1		+		41151	21598	28384	28437	46526	46526					-0.03314511016696997
LISFHSESCV	10	Unmodified	_LISFHSESCV_					0	0	0			REV__ENSG00000106125|ENST00000265299|MINDY4	REV__ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2702026367188	2	561.268424	1120.5223	-1.2106	-0.00067947	3.0665	0.0017211	1.8559	0.0010416	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	1.0541	1	1263	1263		38.806	4.6336	1	242840000	+		41152	21598	28384	28437	46527	46527					-0.03314511016696997
LISFKKVAAL	10	Unmodified	_LISFKKVAAL_					0	0	0			REV__nc|ENSG00000118369|Q9P2H5-2|USP35	REV__nc|ENSG00000118369|Q9P2H5-2|USP35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3021240234375	2	545.35516	1088.69577	-0.60284	-0.00032876	3.7507	0.0020455	3.1479	0.0017167	545.3570605817187	63.534	0.10808	63.283	63.192	63.3	-0.25141					4	2	2	0	0	0	0.03519	1	7403	7403		37.812	6.2817	1	64857	+		41153	22400	28385	28438	46528	46528					0.1549664282190406
LISFNELFL	9	Unmodified	_LISFNELFL_					0	0	0			REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3082275390625	2	548.307875	1094.6012	-0.56933	-0.00031217	0.08789	4.8191E-05	-0.48144	-0.00026398	548.307774593908	101.61	1.8886	101.61	100.99	102.88	0					101	43	4	0	0	0	0.13494	3	13026	13003;13015;13026		102.77	8.7669	1	2686600	+		41154	24787	28386	28439	46529;46530;46531	46531					0.05768084279884533
LISFNELFL	9	Unmodified	_LISFNELFL_					0	0	0			REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3079833984375	2	548.307875	1094.6012	-0.63397	-0.00034761	0.27737	0.00015208	-0.3566	-0.00019553	548.30787158307	101.57	1.6212	101.58	101.09	102.71	0.0090332					100	37	4	0	0	0	0.11848	2	12952	12952;12985		106.42	0	1	2768400	+		41155	24787	28386	28439	46532;46533	46532					0.05768084279884533
LISFNELFL	9	Unmodified	_LISFNELFL_					0	0	0			REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3078002929688	2	548.307875	1094.6012	-0.34826	-0.00019095	0.045134	2.4748E-05	-0.30312	-0.00016621	548.30777302576	101.66	1.8008	101.65	101.06	102.86	-0.0054474					102	41	4	0	0	0	0.17455	2	12928	12928;13003		94.006	7.8149	1	3111100	+		41156	24787	28386	28439	46534;46535	46534					0.05768084279884533
LISGATLLLV	10	Unmodified	_LISGATLLLV_					0	0	0		ENST00000360409.7_1_2:206547732-206547855:+|nuORF	ENST00000360409.7_1_2:206547732-206547855:+|nuORF	ENST00000360409.7_1_2:206547732-206547855:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.31304931640625	2	500.326068	998.637583	0.35916	0.0001797	0.3114	0.0001558	0.67056	0.0003355	500.3261419662669	76.214	0.48663	76.226	76.166	76.653	0.011642					17	11	3	0	0	0	0.03519	1	9365	9365		66.429	0	1	346270			41157	12766	28387	28440	46536	46536					0.1382096117662286
LISGAYTYI	9	Unmodified	_LISGAYTYI_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B;REV__MYO9B-ABHD8|1|fusion	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7894592285156	2	500.771126	999.527698	-0.016656	-8.3407E-06	1.8789	0.0009409	1.8622	0.00093255	500.7715793810969	92.918	0.33852	92.925	92.801	93.14	0.0077286					14	7	2	0	0	0	0.024487	1	11722	11722		31.955	5.1588	1	66709	+		41158	21001;36414	28388	28441	46537	46537					0.02791535837422998
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3046264648438	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.79525	3	11019	11006;11019;11031		60.972	9.7792	1	11993000	+		41159	24649	28389	28442	46538;46539;46540	46539					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3043212890625	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.71272	3	10965	10965;10977;11123		66.429	9.5837	1	10615000	+		41160	24649	28389	28442	46541;46542;46543	46541					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3035888671875	2	523.301736	1044.58892	0.14512	7.5942E-05	3.2274	0.0016889	3.3725	0.0017648	523.3034587451363	89.598	0.54921	89.577	89.283	89.833	-0.021645					40	12	4	0	0	0	1.0271	1	11281	11281		42.396	1.618	1	592480	+		41161	24649	28389	28442	46544	46544					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.30419921875	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.82838	4	10912	10912;10936;10949;11069		58.782	5.237	1	11897000	+		41162	24649	28389	28442	46545;46546;46547;46548	46545					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3033447265625	2	523.301736	1044.58892	0.12304	6.4388E-05	3.2645	0.0017083	3.3876	0.0017727	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	1.0781	2	10330	10330;10340		35.618	2.8059	1	3963900	+		41163	24649	28389	28442	46549;46550	46549					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3037109375	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	1.0781	3	10651	10651;10831;10871		35.618	5.1146	1	14072000	+		41164	24649	28389	28442	46551;46552;46553	46551					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3036499023438	2	523.301736	1044.58892	0.82974	0.00043421	2.4108	0.0012616	3.2405	0.0016958	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.0665	2	10445	10410;10445		37.159	6.6555	1	3893600	+		41165	24649	28389	28442	46554;46555	46555					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3033447265625	2	523.301736	1044.58892	0.47324	0.00024765	2.705	0.0014155	3.1782	0.0016632	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.941	6	10647	10647;10659;10757;10773;10821;10872		51.335	5.237	1	13836000	+		41166	24649	28389	28442	46556;46557;46558;46559;46560;46561	46556					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3036499023438	2	523.301736	1044.58892	-0.28114	-0.00014712	3.8839	0.0020324	3.6027	0.0018853	523.3036290350911	89.646	0.60334	89.518	89.242	89.846	-0.12774					45	13	4	0	0	0	1.0142	1	10933	10933		44.117	3.3386	1	897320	+		41167	24649	28389	28442	46562	46562					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0271	3	10608	10608;10632;10770		42.396	5.237	1	14210000	+		41168	24649	28389	28442	46563;46564;46565	46563					0.06840724545190824
LISGVLELMA	10	Unmodified	_LISGVLELMA_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3041381835938	2	523.301736	1044.58892	0.29693	0.00015538	3.2182	0.0016841	3.5151	0.0018395	523.3032989158403	89.717	0.56227	89.58	89.273	89.836	-0.13761					34	12	3	0	0	0	0.71272	1	10940	10940		66.429	6.311	1	910160	+		41169	24649	28389	28442	46566	46566					0.06840724545190824
LISILSASW	9	Unmodified	_LISILSASW_					0	0	0			REV__ENSG00000106404|ENST00000308344|CLDN15	REV__ENSG00000106404|ENST00000308344|CLDN15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.8066711425781	2	495.286943	988.559333	0.67776	0.00033568	-1.441	-0.00071369	-0.76321	-0.00037801	495.2856990099544	82.158	0.24501	82.048	81.881	82.126	-0.11006					9	5	2	0	0	0	0.024436	1	10194	10194		47.916	1.9636	1	111270	+		41170	21617	28390	28443	46567	46567					0.0645952859136969
LISILSASW	9	Unmodified	_LISILSASW_					0	0	0			REV__ENSG00000106404|ENST00000308344|CLDN15	REV__ENSG00000106404|ENST00000308344|CLDN15	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.286943	988.559333	-0.28849	-0.00014289	0.20092	9.9513E-05	-0.087573	-4.3374E-05	495.2870500653059	82.011	0.28952	82.037	81.899	82.189	0.025711	-0.0056222	0.00084764	NaN	47.916	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99651	+		41171	21617	28390	28443							0.0645952859136969
LISKGGQFTI	10	Unmodified	_LISKGGQFTI_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2939453125	2	532.310949	1062.60735	-0.7127	-0.00037938	0.606	0.00032258	-0.10669	-5.6794E-05	533.3168403933457	77.851	0.29232	77.867	77.739	78.031	0.015907					12	6	3	0	0	0	0.03519	1	9541	9541		30.318	6.115	1	54657			41172	5140	28391	28444	46568	46568					0.0785460251142922
LISKKYRA	8	Unmodified	_LISKKYRA_					0	0	0		ENSG00000102539|ENST00000218721|MLNR	ENSG00000102539|ENST00000218721|MLNR	ENSG00000102539|ENST00000218721|MLNR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2657775878906	2	489.808377	977.6022	0.012999	6.3668E-06	-1.9822	-0.0009709	-1.9692	-0.00096453	489.8070818191174	55.775	0.50203	55.559	55.27	55.772	-0.21607					16	13	2	0	0	0	0.027866	1	6015	6015		32.812	0	1	160650			41173	2413	28392	28445	46569	46569					0.1125034343946254
LISLLLYKV	9	Unmodified	_LISLLLYKV_					0	0	0			REV__ENSG00000112116|ENST00000336123|IL17F	REV__ENSG00000112116|ENST00000336123|IL17F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8026733398438	2	531.352086	1060.68962	-0.69017	-0.00036673	0.31085	0.00016517	-0.37933	-0.00020156	531.3520446261342	78.999	0.91544	78.82	78.562	79.478	-0.17852					29	21	2	0	0	0	0.024447	1	9835	9835		32.812	4.9302	1	154840	+		41174	21967	28393	28446	46570	46570					0.16170124590348678
LISLLQPNI	9	Unmodified	_LISLLQPNI_					0	0	0			REV__nc|ENSG00000108846|O15438-5|ABCC3	REV__nc|ENSG00000108846|O15438-5|ABCC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7138671875	2	505.815867	1009.61718	-0.56844	-0.00028753	-2.3459	-0.0011866	-2.9143	-0.0014741	505.81447081867043	32.052	0.34093	31.894	31.694	32.035	-0.15772					14	7	3	0	0	0	0.024506	1	2173	2173		30.504	7.4612	1	60516	+		41175	21766	28394	28447	46571	46571					0.11275790516799589
LISLLQPNI	9	Unmodified	_LISLLQPNI_					0	0	0			REV__nc|ENSG00000108846|O15438-5|ABCC3	REV__nc|ENSG00000108846|O15438-5|ABCC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.815867	1009.61718	0.075657	3.8269E-05	-2.6149	-0.0013226	-2.5392	-0.0012844	505.81442477905455	32.063	0.52017	31.871	31.685	32.205	-0.19261	-0.011849	-0.00012701	NaN	16.473	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32260	+		41176	21766	28394	28447							0.11275790516799589
LISLPPARV	9	Unmodified	_LISLPPARV_					0	0	0		ENST00000551535.1_1_12:49500594-49504491:-|nuORF	ENST00000551535.1_1_12:49500594-49504491:-|nuORF	ENST00000551535.1_1_12:49500594-49504491:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.77630615234375	2	483.310752	964.606951	0.42389	0.00020487	-1.0149	-0.00049053	-0.59106	-0.00028566	483.31011836591085	49.206	0.87158	49.206	48.934	49.805	0					41	23	2	0	0	0	0.024477	1	5147	5147		27.882	9.5578	1	1802800			41177	16602	28395	28448	46572	46572					0.12323227582226082
LISLWRTN	8	Unmodified	_LISLWRTN_					0	0	0		RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	RAB42|p.G81Vfs*119|1|0.22|ENSG00000188060|chr1:28594035-28594035|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8176574707031	2	501.790184	1001.56581	-0.52237	-0.00026212	3.6364	0.0018247	3.114	0.0015626	502.2933392776465	93.719	0.16273	93.715	93.623	93.786	-0.0041962					5	3	2	0	0	0	0.027866	1	11874	11874		31.955	14.59	1	55545			41178	19020	28396	28449	46573	46573					0.06509466542763676
LISMKVKYQSL	11	Unmodified	_LISMKVKYQSL_					0	0	0		ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENST00000510751.5_1_5:169015420-169022772:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.25714111328125	3	437.256458	1308.74754	0.65097	0.00028464	1.4631	0.00063976	2.1141	0.0009244	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	1.0563	1	12376	12376		23.378	0	1	1147200			41179	15756	28397	28450	46574	46574					0.10552018453495293
LISMRNAVKWS	11	Unmodified	_LISMRNAVKWS_					0	0	0			REV__ENST00000486339.6_1_16:2156986-2157277:-|nuORF	REV__ENST00000486339.6_1_16:2156986-2157277:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.57763671875	3	435.576302	1303.70708	1.4143	0.00061602	1.8941	0.00082502	3.3084	0.001441	435.57704527423255	110.37	0.77484	110.37	110.08	110.86	0					74	23	4	0	0	0	1.0592	1	14047	14047		22.562	3.2989	1	451640	+		41180	33586	28398	28451	46575	46575					0.06737096853726143
LISNQGPGGSG	11	Unmodified	_LISNQGPGGSG_					0	0	0			REV__ENST00000518210.5_1_6:74171896-74172010:+|nuORF	REV__ENST00000518210.5_1_6:74171896-74172010:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7720031738281	2	493.748713	985.482873	0.47157	0.00023284	-1.5009	-0.00074105	-1.0293	-0.00050821	493.7478489224058	33.218	0.66133	33.275	32.838	33.5	0.056568					27	17	2	0	0	0	0.024795	1	2291	2291		60.118	16.001	1	229180	+		41181	34226	28399	28452	46576	46576					-0.01044894975882471
LISPARLNL	9	Unmodified	_LISPARLNL_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2983703613281	2	498.813659	995.612765	-0.70564	-0.00035198	-0.3453	-0.00017224	-1.0509	-0.00052422	498.813418116131	62.027	0.43472	62.027	61.682	62.117	0					19	11	2	0	0	0	0.024323	1	7166	7166		53.351	0	1	461510			41182	9753	28400	28453	46577	46577					0.114783260938907
LISPCFFLF	9	Unmodified	_LISPCFFLF_					0	0	0			REV__ENST00000412278.2_3_11:66413513-66413711:+|nuORF	REV__ENST00000412278.2_3_11:66413513-66413711:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2371215820312	2	543.788264	1085.56198	-0.021869	-1.1892E-05	-3.7073	-0.002016	-3.7292	-0.0020279	543.7862627171447	58.948	0.39285	58.706	58.461	58.854	-0.24165					15	9	2	0	0	0	0.024443	1	6463	6463		44.531	27.166	1	306040	+		41183	31993	28401	28454	46578	46578					0.022616607246618514
LISPKPLAL	9	Unmodified	_LISPKPLAL_					0	0	0		ENST00000585456.1_1_18:61026935-61034351:-|nuORF;ENST00000589530.5_1_18:61022616-61034411:-|nuORF;KDSR|p.M202Ifs*7|1|0.2|ENSG00000119537|chr18:63350891-63350892|-/A|frameshift_variant;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR;ENST00000590056.1_1_18:61033898-61034411:-|nuORF;ENST00000587292.1_1_18:61033532-61034411:-|nuORF	ENST00000585456.1_1_18:61026935-61034351:-|nuORF	ENST00000585456.1_1_18:61026935-61034351:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.31610107421875	2	476.315503	950.616454	0.29458	0.00014031	-0.4524	-0.00021548	-0.15782	-7.5173E-05	476.3151581549341	66.244	0.57885	65.962	65.634	66.213	-0.28148					49	14	4	0	0	0	0.53979	1	7881	7881		56.721	7.2795	1	8021800			41184	3745	28402	28455	46579	46579					0.13916995867737114
LISPQHVLT	9	Unmodified	_LISPQHVLT_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7632141113281	2	504.297842	1006.58113	-0.45821	-0.00023107	-0.13505	-6.8106E-05	-0.59326	-0.00029918	504.2975866235206	31.014	0.71518	31.026	30.75	31.465	0.011797					41	16	4	0	0	0	0.024397	1	2069	2069		47.657	0	1	1017900			41185	5869	28403	28456	46580	46580					0.0781033333993264
LISPQHVLT	9	Unmodified	_LISPQHVLT_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.297842	1006.58113	-0.95572	-0.00048197	0.28588	0.00014417	-0.66984	-0.0003378	504.29778270834294	31.133	0.59032	31.133	30.838	31.428	0	0.12818	0.00032262	NaN	47.657	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	839800			41186	5869	28403	28456							0.0781033333993264
LISPQHVLT	9	Unmodified	_LISPQHVLT_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.297842	1006.58113	-0.36324	-0.00018318	-0.26154	-0.00013189	-0.62478	-0.00031508	504.2974895591094	30.78	0.668	30.855	30.586	31.254	0.074314	-0.14992	-0.00022951	NaN	47.657	44	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1040100			41187	5869	28403	28456							0.0781033333993264
LISRSPKAL	9	Unmodified	_LISRSPKAL_					0	0	0			REV__ENST00000330636.8_2_6:5216929-5261090:-|nuORF	REV__ENST00000330636.8_2_6:5216929-5261090:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7848205566406	2	492.813659	983.612765	0.098585	4.8584E-05	1.0263	0.00050577	1.1249	0.00055435	492.81493661030225	46.946	0.41834	46.677	46.49	46.908	-0.26939					18	11	2	0	0	0	0.024405	1	4539	4539		27.882	4.8398	1	1270600	+		41188	30461	28404	28457	46581	46581					0.12030326093884014
LISRSPKAL	9	Unmodified	_LISRSPKAL_					0	0	0			REV__ENST00000330636.8_2_6:5216929-5261090:-|nuORF	REV__ENST00000330636.8_2_6:5216929-5261090:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7840576171875	2	492.813659	983.612765	-0.42883	-0.00021134	3.1162	0.0015357	2.6874	0.0013244	492.81543993391193	46.71	0.36699	46.516	46.345	46.712	-0.19387					23	10	3	0	0	0	0.024292	1	4521	4521		40.778	17.741	1	396760	+		41189	30461	28404	28457	46582	46582					0.12030326093884014
LISRVCAL	8	Unmodified	_LISRVCAL_					0	0	0			REV__ENST00000569969.5_2_16:28986191-28992937:+|nuORF	REV__ENST00000569969.5_2_16:28986191-28992937:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.7530822753906	2	437.762581	873.510608	-0.35919	-0.00015724	1.4038	0.00061452	1.0446	0.00045728	437.7631885865515	49.45	1.2113	49.349	48.726	49.938	-0.1008					36	31	2	0	0	0	0.027866	1	4962	4962		47.916	5.4411	1	196280	+		41190	35381	28405	28458	46583	46583					0.06879336750637322
LISSAKQV	8	Unmodified	_LISSAKQV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2583312988281	2	423.258185	844.501818	-0.21137	-8.9463E-05	0.39095	0.00016547	0.17958	7.6009E-05	423.25824823313735	27.226	1.0208	26.984	26.701	27.721	-0.24217					63	23	5	0	0	0	0.42327	1	1488	1488		94.006	0	1	2125500			41191	5087;8217	28406	28459	46584	46584					0.07334686385809164
LISSAKQV	8	Unmodified	_LISSAKQV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.258056640625	2	423.258185	844.501818	-0.27339	-0.00011571	0.36242	0.0001534	0.08903	3.7683E-05	423.2582263060112	27.077	1.0641	26.908	26.506	27.57	-0.16816					71	24	5	0	0	0	0.59392	1	1483	1483		76.847	0	1	3024700			41192	5087;8217	28406	28459	46585	46585					0.07334686385809164
LISSEEQSH	9	Unmodified	_LISSEEQSH_					0	0	0		ENST00000586075.1_2_19:14044750-14048885:-|nuORF	ENST00000586075.1_2_19:14044750-14048885:-|nuORF	ENST00000586075.1_2_19:14044750-14048885:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2821655273438	2	515.246003	1028.47745	-0.6229	-0.00032094	-2.2829	-0.0011763	-2.9058	-0.0014972	515.2446018160671	65.309	0.40307	65.309	65.091	65.494	0					17	11	2	0	0	0	0.024466	1	7745	7745		25.45	3.4903	1	702240			41193	17236	28407	28460	46586	46586					-0.035646185583800616
LISSEQTFY	9	Unmodified	_LISSEQTFY_					0	0	0			REV__ENST00000513439.5_1_5:7889238-7895910:+|nuORF	REV__ENST00000513439.5_1_5:7889238-7895910:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.2646484375	2	544.268947	1086.52334	-0.46467	-0.00025291	0.26206	0.00014263	-0.20262	-0.00011028	544.2691524127117	58.645	1.3014	58.458	57.964	59.265	-0.18795					79	31	5	0	0	0	0.27161	1	6451	6451		79.451	10.966	1	2446000	+		41194	34046	28408	28461	46587	46587					-0.01645973376139409
LISSRFNRG	9	Unmodified	_LISSRFNRG_					0	0	0			REV__ENST00000439129.5_2_22:42487426-42487501:+|nuORF	REV__ENST00000439129.5_2_22:42487426-42487501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.295654296875	2	525.296165	1048.57778	-0.18574	-9.7569E-05	1.5476	0.00081292	1.3618	0.00071536	525.2965732248329	81.032	0.86768	80.889	80.616	81.483	-0.14248					49	20	4	0	0	0	0.70156	1	9742	9742		45.972	1.8554	1	1115800	+		41195	32500	28409	28462	46588	46588					0.05543083285942885
LISSVNKGDF	10	Unmodified	_LISSVNKGDF_					0	0	0			REV__ENSG00000164951|ENST00000297598|PDP1	REV__ENSG00000164951|ENST00000297598|PDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7655639648438	2	540.290214	1078.56587	-0.56595	-0.00030577	0.79837	0.00043135	0.23242	0.00012558	540.2905489437021	49.756	0.90415	49.576	48.884	49.788	-0.18071					34	23	3	0	0	0	0.03519	1	5016	5016		42.864	0	1	669840	+		41196	25825	28410	28463	46589	46589					0.029734217520854145
LISTAGMPVI	10	Unmodified	_LISTAGMPVI_					0	0	0			REV__nc|ENSG00000100767|O95428-4|PAPLN	REV__nc|ENSG00000100767|O95428-4|PAPLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2902526855469	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	1.0004	1	10838	10838		45.952	1.8352	1	8460100	+		41197	21149	28411	28464	46590	46590					0.06244455373735036
LISTAGMPVI	10	Unmodified	_LISTAGMPVI_					0	0	0			REV__nc|ENSG00000100767|O95428-4|PAPLN	REV__nc|ENSG00000100767|O95428-4|PAPLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2907409667969	2	501.288628	1000.5627	-0.5165	-0.00025891	3.5401	0.0017746	3.0236	0.0015157	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	1.1166	1	10691	10691		30.504	1.3541	1	8326900	+		41198	21149	28411	28464	46591	46591					0.06244455373735036
LISTAGMPVI	10	Unmodified	_LISTAGMPVI_					0	0	0			REV__nc|ENSG00000100767|O95428-4|PAPLN	REV__nc|ENSG00000100767|O95428-4|PAPLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29046630859375	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.0541	2	10441	10441;10513		38.806	3.1879	1	10557000	+		41199	21149	28411	28464	46592;46593	46592					0.06244455373735036
LISTHKFW	8	Unmodified	_LISTHKFW_					0	0	0		ENST00000371703.7_1_10:92631554-92631593:+|nuORF	ENST00000371703.7_1_10:92631554-92631593:+|nuORF	ENST00000371703.7_1_10:92631554-92631593:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.3140258789062	2	516.287277	1030.56	-0.065051	-3.3585E-05	-2.4966	-0.0012889	-2.5616	-0.0013225	516.285649101881	98.139	0.21163	97.973	97.904	98.116	-0.1652					6	5	2	0	0	0	0.027866	1	12134	12134		30.504	2.6214	1	138370			41200	13009	28412	28465	46594	46594					0.04594368031075646
LISTIFKQDL	10	Unmodified	_LISTIFKQDL_					0	0	0			REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.34326171875	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0122	1	11806	11806		44.377	9.2252	1	12648000	+		41201	35998	28413	28466	46595	46595					0.09415427371436635
LISTIFKQDL	10	Unmodified	_LISTIFKQDL_					0	0	0			REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3430786132812	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0816	2	11769	11757;11769		35.152	4.6509	1	13724000	+		41202	35998	28413	28466	46596;46597	46597					0.09415427371436635
LISTIFKQDL	10	Unmodified	_LISTIFKQDL_					0	0	0			REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428344726562	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0236	3	11642	11365;11388;11642		42.864	5.0528	1	17343000	+		41203	35998	28413	28466	46598;46599;46600	46600					0.09415427371436635
LISTIFKQDL	10	Unmodified	_LISTIFKQDL_					0	0	0			REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	REV__EPCAM|p.P178Q|1|0.17|ENSG00000119888|chr2:47377055-47377055|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3436889648438	2	589.344989	1176.67542	-0.89938	-0.00053004	-2.2856	-0.001347	-3.185	-0.0018771	589.3435287738987	95.622	0.99408	95.471	95.142	96.136	-0.15186					57	22	3	0	0	0	0.96965	1	11775	11775		49.442	10.189	1	942320	+		41204	35998	28413	28466	46601	46601					0.09415427371436635
LISTQPAVA	9	Unmodified	_LISTQPAVA_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2873229980469	2	450.263468	898.512382	-0.93437	-0.00042071	-0.45733	-0.00020592	-1.3917	-0.00062664	450.2626788376429	37.313	0.62447	37.093	36.647	37.271	-0.2195					27	15	3	0	0	0	0.021088	1	2957	2957		68.787	0	1	103880	+		41205	23118	28414	28467	46602	46602					0.05906669040223278
LISTVKEV	8	Unmodified	_LISTVKEV_					0	0	0			REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	445.2885437011719	2	444.773668	887.532783	0.15934	7.087E-05	-0.83044	-0.00036936	-0.67111	-0.00029849	444.7735460875842	90.495	1.1124	90.478	89.999	91.111	-0.016708					40	26	2	0	0	0	0.027866	1	11344	11344		12.959	5.2689	1	587690	+		41206	23789	28415	28468	46603	46603					0.08451839700046548
LISTVKEV	8	Unmodified	_LISTVKEV_					0	0	0			REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	444.773668	887.532783	-1.0538	-0.00046872	1.0506	0.00046727	-0.003257	-1.4486E-06	444.7740825234194	90.448	0.75465	90.448	90.133	90.887	0	0.090156	0.00052594	NaN	12.959	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	773350	+		41207	23789	28415	28468							0.08451839700046548
LISTVKEV	8	Unmodified	_LISTVKEV_					0	0	0			REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	444.773668	887.532783	0.30999	0.00013788	-0.2129	-9.4692E-05	0.097094	4.3185E-05	444.7734823133182	90.466	1.202	90.48	90.161	91.363	0.013443	0.12222	-0.00059798	NaN	12.959	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1136800	+		41208	23789	28415	28468							0.08451839700046548
LISTVKEV	8	Unmodified	_LISTVKEV_					0	0	0			REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	444.773668	887.532783	-1.0466	-0.00046548	1.1628	0.0005172	0.11627	5.1714E-05	444.7741064404365	90.37	0.70035	90.215	89.944	90.644	-0.1552	-0.14281	0.0006258	NaN	12.959	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302400	+		41209	23789	28415	28468							0.08451839700046548
LISTVKEV	8	Unmodified	_LISTVKEV_					0	0	0			REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	444.773668	887.532783	-0.69329	-0.00030836	0.72191	0.00032109	0.028614	1.2727E-05	444.77392786454556	90.373	0.7827	90.248	89.97	90.753	-0.12513	-0.10972	0.00023358	NaN	12.959	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577290	+		41210	23789	28415	28468							0.08451839700046548
LISTVKEV	8	Unmodified	_LISTVKEV_					0	0	0			REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	REV__ENST00000560523.5_1_15:70964229-70991966:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	444.773668	887.532783	0.47286	0.00021032	-0.47431	-0.00021096	-0.0014514	-6.4554E-07	444.7733809488393	90.415	0.78789	90.277	89.997	90.785	-0.13824	-0.080383	-0.00083052	NaN	12.959	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641690	+		41211	23789	28415	28468							0.08451839700046548
LISVGKKNP	9	Unmodified	_LISVGKKNP_					0	0	0		ENST00000590392.5_1_19:37203293-37203431:+|nuORF	ENST00000590392.5_1_19:37203293-37203431:+|nuORF	ENST00000590392.5_1_19:37203293-37203431:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.30059814453125	2	478.300384	954.586216	-0.77628	-0.00037129	-0.11055	-5.2875E-05	-0.88682	-0.00042417	478.3002911219348	37.77	1.786	37.688	37.144	38.93	-0.082516					105	49	4	0	0	0	0.22754	1	3110	3110		85.359	0	1	15242000			41212	17333	28416	28469	46604	46604					0.10710637202555517
LISVQSERCL	10	Unmodified	_LISVQSERCL_					0	0	0			REV__ENST00000485726.1_1_7:103828364-103848439:-|nuORF	REV__ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	573.7911987304688	2	574.310623	1146.60669	-1.7306	-0.0009939	1.7421	0.0010005	0.011501	6.605E-06	574.3112728511181	21.328	0.58878	21.328	20.949	21.537	0					18	11	2	0	0	0	0.03519	1	618	618		49.536	14.384	1	29132	+		41213	25805	28417	28470	46605	46605					0.03925439800082131
LISVRSGKLV	10	Unmodified	_LISVRSGKLV_					0	0	0			REV__nc|ENSG00000069966|O14775-3|GNB5	REV__nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.33154296875	2	536.347866	1070.68118	-0.21587	-0.00011578	3.4982	0.0018763	3.2823	0.0017605	536.3495726650413	46.608	0.35046	46.511	46.368	46.719	-0.096653					14	9	2	0	0	0	0.03519	1	4522	4522		36.447	18.122	1	1248400	+		41214	20409	28418	28471	46606	46606					0.1486657067375745
LISWNLKW	8	Unmodified	_LISWNLKW_					0	0	0		ENST00000196169.7_2_13:61084847-61084877:+|nuORF	ENST00000196169.7_2_13:61084847-61084877:+|nuORF	ENST00000196169.7_2_13:61084847-61084877:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2825317382812	2	530.302927	1058.5913	-1.0537	-0.00055878	-2.6919	-0.0014275	-3.7456	-0.0019863	530.3014657624675	55.748	0.82274	55.591	55.312	56.135	-0.15656					53	21	4	0	0	0	0.027866	1	6060	6060		51.335	1.8939	1	1624100			41215	11126	28419	28472	46607	46607					0.06434941065163002
LISWNLKW	8	Unmodified	_LISWNLKW_					0	0	0		ENST00000196169.7_2_13:61084847-61084877:+|nuORF	ENST00000196169.7_2_13:61084847-61084877:+|nuORF	ENST00000196169.7_2_13:61084847-61084877:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2794799804688	2	530.302927	1058.5913	-0.44592	-0.00023647	-3.4724	-0.0018414	-3.9183	-0.0020779	530.30104324796	55.85	0.70154	55.634	55.336	56.038	-0.21607					42	18	3	0	0	0	0.027866	1	6046	6046		51.335	1.3109	1	1788300			41216	11126	28419	28472	46608	46608					0.06434941065163002
LISWPLLGF	9	Unmodified	_LISWPLLGF_					0	0	0		ENST00000589630.1_1_18:32821016-32822453:+|nuORF;ENST00000589420.1_1_18:32821016-32837899:+|nuORF	ENST00000589630.1_1_18:32821016-32822453:+|nuORF	ENST00000589630.1_1_18:32821016-32822453:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8070678710938	2	523.307678	1044.6008	-0.46554	-0.00024362	-3.4557	-0.0018084	-3.9212	-0.002052	523.3058108763659	72.559	0.6582	72.559	72.252	72.91	0					37	15	3	0	0	0	0.024325	1	8790	8790		40.573	4.9543	1	1113200			41217	17309	28420	28473	46609	46609					0.0802870935071951
LISWVEEEA	9	Unmodified	_LISWVEEEA_					0	0	0		ENSG00000169951|ENST00000395091|ZNF764;nc|ENSG00000169951|Q96H86|ZNF764	ENSG00000169951|ENST00000395091|ZNF764	ENSG00000169951|ENST00000395091|ZNF764	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2445678710938	2	538.268947	1074.52334	-2.0682	-0.0011132	-3.1683	-0.0017054	-5.2365	-0.0028186	538.2674398508113	55.956	0.17792	55.74	55.673	55.851	-0.21551					5	4	2	0	0	0	0.023596	1	6018	6018		85.359	27.548	1	83347			41218	7994	28421	28474	46610	46610					-0.010939733761233583
LISYLIPDL	9	Unmodified	_LISYLIPDL_					0	0	0		ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.8389892578125	2	523.810251	1045.60595	-0.81064	-0.00042462	3.6673	0.001921	2.8567	0.0014964	523.8125544087559	60.82	0.11649	60.891	60.831	60.947	0.071125					4	2	2	0	0	0	0.024457	1	6932	6932		37.159	11.709	1	184890			41219	6211	28422	28475	46611	46611					0.08496968422650752
LISYSVSRS	9	Unmodified	_LISYSVSRS_					0	0	0			REV__ENSG00000168676|ENST00000304372|KCTD19	REV__ENSG00000168676|ENST00000304372|KCTD19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.2919616699219	2	506.277106	1010.53966	0.44392	0.00022475	4.0563	0.0020536	4.5002	0.0022784	506.27904698718345	96.043	0.62133	96.05	95.775	96.397	0.0065079					24	14	2	0	0	0	0.024523	1	12204	12204		21.96	3.6355	1	91770	+		41220	26282	28423	28476	46612	46612					0.03481152580627622
LITCEEIN	8	Unmodified	_LITCEEIN_					0	0	0			REV__nc|ENSG00000101489|Q9BZC1-5|CELF4	REV__nc|ENSG00000101489|Q9BZC1-5|CELF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7318420410156	2	467.731143	933.447733	-0.54561	-0.0002552	0.75943	0.00035521	0.21383	0.00010001	467.73135740885226	60.38	1.4397	60.204	59.849	61.289	-0.1761					67	35	4	0	0	0	0.62178	1	6710	6710		74.255	8.4519	1	1639800	+		41221	21238	28424	28477	46613	46613					-0.021652738280636186
LITCEEIN	8	Unmodified	_LITCEEIN_					0	0	0			REV__nc|ENSG00000101489|Q9BZC1-5|CELF4	REV__nc|ENSG00000101489|Q9BZC1-5|CELF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.73101806640625	2	467.731143	933.447733	-0.72809	-0.00034055	0.87868	0.00041098	0.15059	7.0434E-05	467.73135333953655	60.484	0.94125	60.23	59.794	60.736	-0.25373					56	23	4	0	0	0	0.4075	1	6725	6725		96.19	0.14271	1	1478900	+		41222	21238	28424	28477	46614	46614					-0.021652738280636186
LITDMALTKV	10	Unmodified	_LITDMALTKV_					0	0	0			REV__ENST00000507559.1_1_5:141384487-141385853:-|nuORF	REV__ENST00000507559.1_1_5:141384487-141385853:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8158569335938	2	552.820292	1103.62603	0.36653	0.00020262	-3.4544	-0.0019097	-3.0879	-0.001707	552.8182658375508	98.768	0.82756	98.764	98.472	99.3	-0.0038834					43	18	3	0	0	0	0.42812	1	12547	12547		95.815	8.0609	1	403530	+		41223	22072	28425	28478	46615	46615					0.07836396090965536
LITFHSTF	8	Unmodified	_LITFHSTF_					0	0	0		nc|ENSG00000134198|O60636-2|TSPAN2;ENSG00000134198|ENST00000369516|TSPAN2	nc|ENSG00000134198|O60636-2|TSPAN2	nc|ENSG00000134198|O60636-2|TSPAN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2561340332031	2	483.258185	964.501818	-0.69184	-0.00033434	-3.5296	-0.0017057	-4.2215	-0.0020401	483.25635086536585	39.121	1.1378	39.022	38.552	39.69	-0.098755					85	31	4	0	0	0	0.61897	1	3322	3322		74.517	3.2209	1	3750800			41224	4763	28426	28479	46616	46616					0.018146863858078177
LITFSEEVN	9	Unmodified	_LITFSEEVN_					0	0	0			REV__ENSG00000179331|ENST00000320578|RAB39A	REV__ENSG00000179331|ENST00000320578|RAB39A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.287109375	2	526.268947	1050.52334	0.0091972	4.8402E-06	-3.0036	-0.0015807	-2.9944	-0.0015758	526.2676030806963	82.437	0.21681	82.256	82.07	82.287	-0.18079					7	4	2	0	0	0	0.024447	1	9927	9927		40.778	14.085	1	37806	+		41225	27258	28427	28480	46617	46617					0.00010026623863268469
LITGHFVTI	9	Unmodified	_LITGHFVTI_					0	0	0			REV__OR5D14|p.I252V|1|0.28|ENSG00000186113|chr11:55796309-55796309|A/G|missense_variant	REV__OR5D14|p.I252V|1|0.28|ENSG00000186113|chr11:55796309-55796309|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7981262207031	2	500.794935	999.575317	0.069481	3.4796E-05	4.4057	0.0022064	4.4752	0.0022412	500.79818337706723	93.297	2.4951	93.175	92.884	95.379	-0.12215					109	57	4	0	0	0	0.67308	1	11513	11513		47.916	0	1	1781000	+		41226	37321	28428	28481	46618	46618					0.07551234828292763
LITGVALDPL	10	Unmodified	_LITGVALDPL_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.30804443359375	2	506.307875	1010.6012	-0.60771	-0.00030769	0.71461	0.00036181	0.1069	5.4126E-05	506.30812060812616	83.984	1.1116	84.011	83.427	84.538	0.026558					59	25	4	0	0	0	0.91051	1	10441	10441		53.351	2.016	1	1033700	+		41227	25147	28429	28482	46619	46619					0.0963208427989457
LITIEINL	8	Unmodified	_LITIEINL_					0	0	0		COMT|p.P143L|1|0.21|ENSG00000093010|chr22:19963704-19963704|C/T|missense_variant	COMT|p.P143L|1|0.21|ENSG00000093010|chr22:19963704-19963704|C/T|missense_variant	COMT|p.P143L|1|0.21|ENSG00000093010|chr22:19963704-19963704|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7744445800781	2	464.789318	927.564084	0.86339	0.0004013	-0.5326	-0.00024755	0.33079	0.00015375	464.7888537420371	51.223	0.46785	51.042	50.834	51.302	-0.18071					16	11	2	0	0	0	0.027866	1	5238	5238		51.335	12.083	1	240530			41228	476	28430	28483	46620	46620					0.09740412734140591
LITIELVDETI	11	Unmodified	_LITIELVDETI_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.7438049316406	3	420.242871	1257.70678	-0.35449	-0.00014897	-3.4768	-0.0014611	-3.8313	-0.0016101	420.24109819641285	27.743	0.64396	27.73	27.464	28.108	-0.012983					25	16	2	0	0	0	0.024757	1	1538	1538		28.577	23.164	1	74030	+		41229	27316	28431	28484	46621	46621					0.08823955614866463
LITIHNEL	8	Unmodified	_LITIHNEL_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7767333984375	2	476.776742	951.538931	1.6489	0.00078615	-2.1221	-0.0010118	-0.47324	-0.00022563	476.7756841288616	106.54	0.35786	106.54	106.39	106.75	0					16	10	2	0	0	0	0.97924	1	13686	13686		40.573	1.7665	1	155960	+		41230	20797	28432	28485	46622	46622					0.06122357931565148
LITIIALDR	9	Unmodified	_LITIIALDR_					0	0	0		ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2774658203125	2	514.329142	1026.64373	-0.10556	-5.4291E-05	-1.7097	-0.00087935	-1.8153	-0.00093364	514.3279625207316	40.726	0.28421	40.726	40.516	40.8	0					18	7	4	0	0	0	0.024541	1	3575	3575		12.207	0	1	1153500			41231	9626	28433	28486	46623	46623					0.13147479408121399
LITINQKL	8	Unmodified	_LITINQKL_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.8045959472656	2	471.80276	941.590967	0.13382	6.3136E-05	0.25626	0.0001209	0.39008	0.00018404	471.8025992737434	56.096	0.91352	55.94	55.666	56.58	-0.15601					57	24	4	0	0	0	0.24001	1	6215	6215		133.81	4.13	1	3200000	+		41232	27801	28434	28487	46624	46624					0.11783521345330428
LITINQKL	8	Unmodified	_LITINQKL_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.8046569824219	2	471.80276	941.590967	-0.33721	-0.0001591	0.72671	0.00034286	0.3895	0.00018377	471.8027885725601	55.803	0.94825	55.901	55.598	56.546	0.097931					58	25	4	0	0	0	0.71063	1	6116	6116		66.429	0	1	3193600	+		41233	27801	28434	28487	46625	46625					0.11783521345330428
LITIRVHKSQT	11	Unmodified	_LITIRVHKSQT_					0	0	0			REV__ENSG00000186130|ENST00000373659|ZBTB6	REV__ENSG00000186130|ENST00000373659|ZBTB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	648.3933715820312	2	648.393336	1294.77212	-0.46644	-0.00030244	-0.36851	-0.00023894	-0.83495	-0.00054138	648.3929857733464	105.5	0.73857	105.37	104.95	105.69	-0.13099					49	24	4	0	0	0	0.96599	1	13145	13145		44.377	15.228	1	1002700	+		41234	27826	28435	28488	46626	46626					0.13652414651210165
LITISAPP	8	Unmodified	_LITISAPP_					0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.2486267089844	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0017	1	11153	11153		37.028	0	1	123310000			41235	37919	28436	28489	46627	46627					0.07228185499843676
LITKFGPFR	9	Unmodified	_LITKFGPFR_					0	0	0		ENSG00000125998|ENST00000374408|FAM83C	ENSG00000125998|ENST00000374408|FAM83C	ENSG00000125998|ENST00000374408|FAM83C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7639770507812	2	539.824027	1077.6335	-0.15135	-8.1704E-05	-3.4155	-0.0018438	-3.5669	-0.0019255	539.8220377615456	50.007	0.45691	49.901	49.708	50.165	-0.10558					19	11	2	0	0	0	0.024477	1	5068	5068		35.618	5.3006	1	250710			41236	4172	28437	28490	46628	46628					0.09778916473578647
LITKLKVW	8	Unmodified	_LITKLKVW_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.8005676269531	2	500.83132	999.648088	-0.50855	-0.0002547	-3.6865	-0.0018463	-4.195	-0.002101	500.8293967310583	46.789	0.65628	46.636	46.242	46.899	-0.15301					40	17	3	0	0	0	0.027866	1	4641	4641		54.765	8.8127	1	598560	+		41237	27755	28438	28491	46629	46629					0.1482498862170587
LITKRDLAL	9	Unmodified	_LITKRDLAL_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENST00000496854.1_1_2:187533488-187534577:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.833984375	2	521.834591	1041.65463	-0.6794	-0.00035454	0.21234	0.00011081	-0.46706	-0.00024373	521.8346325329472	69.245	1.0165	69.245	68.898	69.915	0					82	25	4	0	0	0	0.4752	1	8346	8346		60.972	0	1	5249100			41238	5244	28439	28492	46630	46630					0.13546881782394848
LITKSHGEL	9	Unmodified	_LITKSHGEL_					0	0	0			REV__ENSG00000103994|ENST00000564754|ZNF106	REV__ENSG00000103994|ENST00000564754|ZNF106	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.287841796875	2	499.287474	996.560395	0.7385	0.00036872	-1.2764	-0.0006373	-0.53791	-0.00026857	499.2868437970992	55.686	1.1057	55.686	55.319	56.424	0					76	30	3	0	0	0	0.26966	1	6187	6187		79.713	6.8333	1	25199000	+		41239	21410	28440	28493	46631	46631					0.06197742960296182
LITKSKEG	8	Unmodified	_LITKSKEG_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.263671875	2	438.263468	874.512382	-0.442	-0.00019371	0.69369	0.00030402	0.25169	0.00011031	438.26364621628903	41.031	1.8467	40.801	40.485	42.331	-0.23029					96	49	4	0	0	0	1.0516	1	3606	3606		29.15	2.4566	1	1620600	+		41240	25715	28441	28494	46632	46632					0.07010669040244011
LITKVTAVD	9	Unmodified	_LITKVTAVD_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7757568359375	2	480.292225	958.569897	0.10241	4.9187E-05	0.60963	0.0002928	0.71204	0.00034199	480.2924379431756	79.86	0.42038	79.86	79.616	80.036	0					14	9	2	0	0	0	0.024021	1	9898	9898		58.782	19.529	1	81297			41241	18758	28442	28495	46633	46633					0.08895511245816579
LITLAQGAFLS	11	Unmodified	_LITLAQGAFLS_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3302001953125	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0624	1	11141	11141		21.686	1.689	1	4116000	+		41242	20160	28443	28496	46634	46634					0.0881915819995811
LITLLFTD	8	Unmodified	_LITLLFTD_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7311096191406	2	468.276044	934.537535	-0.82114	-0.00038452	2.1597	0.0010113	1.3385	0.00062679	468.2769064891801	60.549	0.44097	60.373	60.156	60.597	-0.1761					17	10	2	0	0	0	0.027866	1	6732	6732		30.504	7.4612	1	156970			41243	3112	28444	28497	46635	46635					0.06764723842809417
LITLLFTD	8	Unmodified	_LITLLFTD_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.276044	934.537535	-0.11913	-5.5788E-05	1.1914	0.00055791	1.0723	0.00050212	468.27645956003477	60.865	0.51088	60.659	60.378	60.889	-0.20599	0.12356	-0.0008269	NaN	30.504	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93300			41244	3112	28444	28497							0.06764723842809417
LITLLFTD	8	Unmodified	_LITLLFTD_					0	0	0		ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.276044	934.537535	-1.0123	-0.00047406	2.4406	0.0011429	1.4283	0.00066882	468.27699538384064	60.829	0.43455	60.575	60.378	60.813	-0.25373	0.039499	0.00034303	NaN	30.504	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107250			41245	3112	28444	28497							0.06764723842809417
LITLNRPIV	9	Unmodified	_LITLNRPIV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8369140625	2	519.837134	1037.65972	-0.18488	-9.6106E-05	0.087954	4.5722E-05	-0.096923	-5.0384E-05	519.8374366616823	69.895	0.53731	69.895	69.629	70.166	0					18	15	2	0	0	0	0.39228	1	8442	8442		66.429	15.094	1	5175700			41246	5269	28445	28498	46636	46636					0.14239185645033103
LITLNRPIV	9	Unmodified	_LITLNRPIV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.837158203125	2	519.837134	1037.65972	0.60249	0.0003132	-0.074039	-3.8488E-05	0.52845	0.00027471	519.8369791235318	70.24	0.48982	69.947	69.673	70.163	-0.29291					23	13	3	0	0	0	0.50848	1	8441	8441		58.782	11.125	1	4812800			41247	5269	28445	28498	46637	46637					0.14239185645033103
LITLTAIYLL	10	Unmodified	_LITLTAIYLL_					0	0	0			REV__ENST00000468349.1_1_21:34962215-34963578:-|nuORF	REV__ENST00000468349.1_1_21:34962215-34963578:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.2686767578125	2	567.36265	1132.71075	-0.7355	-0.00041729	2.5099	0.001424	1.7744	0.0010067	567.3638897438276	45.695	1.5787	45.493	44.686	46.264	-0.20226					109	43	4	0	0	0	0.03519	1	4416	4416		12.207	5.8942	1	1724700	+		41248	33102	28446	28499	46638	46638					0.1497008989922506
LITLTELL	8	Unmodified	_LITLTELL_					0	0	0			REV__ENSG00000127529|ENST00000248072|OR7C2	REV__ENSG00000127529|ENST00000248072|OR7C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.241455078125	2	458.291694	914.568835	-0.57666	-0.00026428	1.7552	0.0008044	1.1786	0.00054012	458.2926459529451	86.028	0.55453	86.051	85.778	86.332	0.023666					24	12	3	0	0	0	0.027866	1	10704	10704		44.531	0	1	88895	+		41249	22937	28447	28500	46639	46639					0.10813296876915501
LITMVVISSL	10	Unmodified	_LITMVVISSL_					0	0	0		ENST00000512561.5_1_5:68651527-68651587:-|nuORF	ENST00000512561.5_1_5:68651527-68651587:-|nuORF	ENST00000512561.5_1_5:68651527-68651587:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.327392578125	2	538.325211	1074.63587	-0.46158	-0.00024848	3.9725	0.0021385	3.5109	0.00189	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	1.0781	1	12705	12705		35.618	1.4457	1	22988000			41250	15858	28448	28501	46640	46640					0.10153584096383383
LITNHHQF	8	Unmodified	_LITNHHQF_					0	0	0		nc|ENSG00000155085|Q5TCS8-3|AK9;ENST00000466992.1_1_6:109871214-109940313:-|nuORF	nc|ENSG00000155085|Q5TCS8-3|AK9	nc|ENSG00000155085|Q5TCS8-3|AK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3235168457031	2	505.264333	1008.51411	-0.39148	-0.0001978	4.3869	0.0022166	3.9955	0.0020188	505.26722390909134	78.971	0.29387	78.971	78.825	79.119	0					9	6	3	0	0	0	0.027866	1	9782	9782		24.203	3.7209	1	245870			41251	18397	28449	28502	46641	46641					0.010197228488550536
LITNILHSV	9	Unmodified	_LITNILHSV_					0	0	0			REV__ENST00000468428.1_1_20:17594397-17594817:-|nuORF	REV__ENST00000468428.1_1_20:17594397-17594817:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.30517578125	2	505.305667	1008.59678	-0.32733	-0.0001654	-0.047861	-2.4184E-05	-0.37519	-0.00018959	505.3056046204511	69.656	1.2061	69.671	68.9	70.107	0.015121					86	30	4	0	0	0	0.12602	1	8301	8301		104.75	5.3716	1	5746700	+		41252	33104	28450	28503	46642	46642					0.09282619857003738
LITPTCPCL	9	Unmodified	_LITPTCPCL_					0	0	0			REV__ENST00000290510.9_1_12:6948642-6948927:+|nuORF	REV__ENST00000290510.9_1_12:6948642-6948927:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2830810546875	2	480.748282	959.48201	0.41898	0.00020143	-3.5222	-0.0016933	-3.1032	-0.0014919	480.7463979014885	101.93	0.37027	101.76	101.56	101.93	-0.17178					11	8	2	0	0	0	0.024354	1	12629	12629		30.504	0	1	109890	+		41253	29932	28451	28504	46643	46643					0.000648510591872764
LITPYLLDLHK	11	Unmodified	_LITPYLLDLHK_					0	0	0			REV__nc|ENSG00000172955|P28332|ADH6	REV__nc|ENSG00000172955|P28332|ADH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.6012268066406	3	442.599101	1324.77547	0.54223	0.00023999	3.0885	0.001367	3.6308	0.001607	442.6007398797832	102.53	0.67576	102.35	102.09	102.76	-0.17178					43	15	4	0	0	0	1.0674	1	12725	12725		20.315	1.0523	1	539770	+		41254	26725	28452	28505	46644	46644					0.12607664705228672
LITRTSMC	8	Carbamidomethyl (C)	_LITRTSMC(Carbamidomethyl (C))_	LITRTSMC(1)		LITRTSMC(63)		0	1	0			REV__ENST00000444090.6_1_1:160718220-160722967:+|nuORF	REV__ENST00000444090.6_1_1:160718220-160722967:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.248046875	2	491.246437	980.478322	0.13486	6.6248E-05	3.1533	0.0015491	3.2882	0.0016153	491.24786050752704	68.45	0.82254	68.469	68.118	68.941	0.018913					50	21	4	0	0	0	0.74904	1	8132	8132		63.306	6.5852	1	2569100	+		41255	32584	28453	28506	46645	46645	429				-0.012698187146725104
LITSFLDS	8	Unmodified	_LITSFLDS_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2590026855469	2	448.242201	894.469849	0.47075	0.00021101	0.18017	8.076E-05	0.65092	0.00029177	448.242811551535	89.019	0.25023	89.019	88.852	89.102	0					8	5	2	0	0	0	0.027866	1	11223	11223		52.299	0	1	79704			41256	9783	28454	28507	46646	46646					0.018392739120145052
LITSVAIIVM	10	Oxidation (M)	_LITSVAIIVM(Oxidation (M))_		LITSVAIIVM(1)		LITSVAIIVM(41)	0	0	1			REV__ENST00000514325.1_1_4:83277653-83277776:-|nuORF	REV__ENST00000514325.1_1_4:83277653-83277776:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3272705078125	2	538.325211	1074.63587	-0.74784	-0.00040258	4.164	0.0022416	3.4162	0.001839	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.0408	1	12342	12342		40.573	10.069	1	21993000	+		41257	34169	28455	28508	46647	46647		929			0.10153584096360646
LITSVEKKVF	10	Unmodified	_LITSVEKKVF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3533935546875	2	582.355357	1162.69616	-0.88276	-0.00051408	-2.3647	-0.0013771	-3.2475	-0.0018912	582.3538408674295	102.24	1.4134	102.24	101.94	103.36	0.0073471					111	33	7	0	0	0	1.0992	2	13047	13047;13096		32.812	3.6424	1	7932900			41258	7266	28456	28509	46648;46649	46648					0.12132017751082458
LITSVEKKVF	10	Unmodified	_LITSVEKKVF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.3531494140625	2	582.355357	1162.69616	-0.68918	-0.00040135	-2.6596	-0.0015488	-3.3488	-0.0019502	582.3536897697854	102.35	1.693	102.23	101.92	103.61	-0.12666					100	40	6	0	0	0	1.0781	2	12731	12720;12731		35.618	2.8059	1	7549000			41259	7266	28456	28509	46650;46651	46651					0.12132017751082458
LITSVEKKVF	10	Unmodified	_LITSVEKKVF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.3533325195312	2	582.355357	1162.69616	-0.28496	-0.00016595	-3.1107	-0.0018115	-3.3956	-0.0019775	582.3534070628981	102.44	0.86188	102.26	101.97	102.84	-0.17178					81	20	6	0	0	0	1.1329	1	12719	12719		27.882	1.1893	1	8672600			41260	7266	28456	28509	46652	46652					0.12132017751082458
LITTLYIAL	9	Unmodified	_LITTLYIAL_					0	0	0			REV__ENSG00000280094|ENST00000623530|OR1B1	REV__ENSG00000280094|ENST00000623530|OR1B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7644348144531	2	510.820618	1019.62668	-0.74673	-0.00038144	0.33833	0.00017283	-0.4084	-0.00020862	510.82097361121924	25.722	0.16743	25.688	25.598	25.765	-0.034395					5	3	2	0	0	0	0.024517	1	1237	1237		12.959	3.2535	1	13520	+		41261	29233	28457	28510	46653	46653					0.11765558802323994
LITTSLLTPM	10	Unmodified	_LITTSLLTPM_					0	0	0			REV__nc|ENSG00000112062|Q16539-4|MAPK14	REV__nc|ENSG00000112062|Q16539-4|MAPK14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3163452148438	2	545.314843	1088.61513	-0.65895	-0.00035933	3.7367	0.0020377	3.0778	0.0016784	545.3167551725024	101.4	1.0525	101.4	101.12	102.17	0					35	23	2	0	0	0	1.0781	1	12975	12975		35.618	0.46626	1	1388500	+		41262	36569	28458	28511	46654	46654					0.07436993716669349
LITTSPQPV	9	Unmodified	_LITTSPQPV_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.2773132324219	2	478.276575	954.538597	0.51644	0.000247	-0.40502	-0.00019371	0.11142	5.3288E-05	478.27627972810893	74.935	2.0097	74.935	74.298	76.308	0					90	51	4	0	0	0	0.42604	1	9217	9217		64.207	0	1	4339100			41263	127;9786	28459	28512	46655	46655					0.0595093821170849
LIVAELEL	8	Unmodified	_LIVAELEL_					0	0	0			REV__ENST00000452532.1_1_X:55935193-56041369:+|nuORF	REV__ENST00000452532.1_1_X:55935193-56041369:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.27435302734375	2	450.276044	898.537535	-0.17068	-7.6855E-05	-3.9191	-0.0017647	-4.0898	-0.0018415	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	1.0472	1	11616	11616		29.842	0	1	67707000	+		41264	32737	28460	28513	46656	46656					0.08420723842789357
LIVAELELWM	10	Unmodified	_LIVAELELWM_					0	0	0			REV__ENST00000452532.1_1_X:55935193-56041369:+|nuORF	REV__ENST00000452532.1_1_X:55935193-56041369:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.837158203125	2	608.835942	1215.65733	0.31552	0.0001921	1.1905	0.00072483	1.506	0.00091693	608.8365388372442	109.86	0.70741	109.71	109.47	110.18	-0.14888					85	33	5	0	0	0	1.1237	2	13484	13479;13484		29.15	4.9468	1	6043200	+		41265	32737	28461	28514	46657;46658	46658					0.05812969125031486
LIVAGQNLHTA	11	Unmodified	_LIVAGQNLHTA_					0	0	0			REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8259887695312	2	568.824755	1135.63496	0.53534	0.00030451	3.01	0.0017122	3.5453	0.0020167	568.8263418510251	74.552	1.1516	74.552	74.042	75.194	0					83	27	4	0	0	0	0.56861	1	9114	9114		71.877	5.4482	1	2759100	+		41266	36498	28462	28515	46659	46659					0.07256505771647426
LIVALAAAS	9	Unmodified	_LIVALAAAS_					0	0	0			REV__nc|ENSG00000271503|P13501|CCL5	REV__nc|ENSG00000271503|P13501|CCL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.76153564453125	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	0.90698	1	11002	11002		31.955	7.7521	1	53595000	+		41267	29166	28463	28516	46660	46660					0.09099874391176854
LIVALAAAS	9	Unmodified	_LIVALAAAS_					0	0	0			REV__nc|ENSG00000271503|P13501|CCL5	REV__nc|ENSG00000271503|P13501|CCL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7618408203125	2	414.763104	827.511654	-0.33499	-0.00013894	-3.3986	-0.0014096	-3.7336	-0.0015486	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	0.88411	1	10742	10742		33.516	5.2613	1	36536000	+		41268	29166	28463	28516	46661	46661					0.09099874391176854
LIVALDDN	8	Unmodified	_LIVALDDN_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;ENST00000496337.1_1_7:141870985-141908039:+|nuORF	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7748718261719	2	436.739825	871.465098	-0.41552	-0.00018147	-3.2138	-0.0014036	-3.6293	-0.0015851	436.73871112014643	89.997	0.52438	89.997	89.816	90.34	0					17	12	2	0	0	0	0.027866	1	11409	11409		45.952	21.749	1	91330			41269	10923	28464	28517	46662	46662					0.024223897692309038
LIVAQPFR	8	Unmodified	_LIVAQPFR_					0	0	0		ENST00000359591.8_1_14:23346768-23347047:+|nuORF	ENST00000359591.8_1_14:23346768-23347047:+|nuORF	ENST00000359591.8_1_14:23346768-23347047:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2879638671875	2	472.28982	942.565087	-0.48925	-0.00023107	-4.2582	-0.0020111	-4.7475	-0.0022422	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.0133	2	11673	11673;11709		35.201	3.2459	1	45907000			41270	12745	28465	28518	46663;46664	46663					0.09150671893701201
LIVAVLGREWL	11	Unmodified	_LIVAVLGREWL_					0	0	0		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.8928833007812	2	634.889898	1267.76524	0.12287	7.8009E-05	3.5786	0.002272	3.7014	0.00235	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0483	1	12977	12977		25.574	0	1	1729500			41271	4291	28466	28519	46665	46665					0.14207101770671215
LIVCSYKRLL	10	Unmodified	_LIVCSYKRLL_					0	0	0			REV__nc|ENSG00000005100|Q9H6R0-2|DHX33	REV__nc|ENSG00000005100|Q9H6R0-2|DHX33	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3665771484375	2	604.365201	1206.71585	-1.0438	-0.00063086	3.7275	0.0022528	2.6837	0.0016219	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.0344	1	13198	13198		29.15	5.6269	1	4517100	+		41272	19794	28467	28520	46666	46666					0.12076070490184065
LIVCSYKRLL	10	Unmodified	_LIVCSYKRLL_					0	0	0			REV__nc|ENSG00000005100|Q9H6R0-2|DHX33	REV__nc|ENSG00000005100|Q9H6R0-2|DHX33	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.2469787597656	3	403.245893	1206.71585	0.86007	0.00034682	1.9389	0.00078186	2.799	0.0011287	403.24679190087267	103.38	1.8075	103.25	102.9	104.71	-0.12724					103	45	4	0	0	0	1.1211	1	12855	12855		21.686	2.4231	1	2106700	+		41273	19794	28467	28520	46667	46667					0.12076070490184065
LIVDARLM	8	Unmodified	_LIVDARLM_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.77716064453125	2	465.775688	929.536823	0.065671	3.0588E-05	3.2586	0.0015178	3.3243	0.0015484	465.77702176396326	81.519	3.6939	81.543	79.858	83.552	0.023911					241	88	3	0	0	0	0.94517	1	9962	9962		45.952	7.1458	1	1163400	+		41274	25831	28468	28521	46668	46668					0.06923605922099796
LIVDARLM	8	Unmodified	_LIVDARLM_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7772216796875	2	465.775688	929.536823	0.30012	0.00013979	3.7382	0.0017412	4.0383	0.001881	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0239	1	9714	9714		33.516	6.7195	1	1281300	+		41275	25831	28468	28521	46669	46669					0.06923605922099796
LIVDFKSK	8	Unmodified	_LIVDFKSK_					0	0	0			REV__UGT2B15|p.E143K|1|0.25|ENSG00000196620|chr4:68670192-68670192|C/T|missense_variant	REV__UGT2B15|p.E143K|1|0.25|ENSG00000196620|chr4:68670192-68670192|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.260986328125	2	475.289485	948.564418	0.28808	0.00013692	-0.50749	-0.0002412	-0.2194	-0.00010428	475.2890755277683	50.276	0.33929	50.095	49.978	50.317	-0.18071					13	8	2	0	0	0	0.027866	1	5089	5089		19.36	7.1531	1	203970	+		41276	37756	28469	28522	46670	46670					0.08807832453999254
LIVDFLFIL	9	Unmodified	_LIVDFLFIL_					0	0	0		ENST00000506864.5_1_4:90472711-90509087:+|nuORF	ENST00000506864.5_1_4:90472711-90509087:+|nuORF	ENST00000506864.5_1_4:90472711-90509087:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.84033203125	2	546.838811	1091.66307	0.39821	0.00021775	2.0404	0.0011158	2.4386	0.0013335	546.8399841843885	99.748	1.3784	99.613	99.184	100.56	-0.13526					99	37	6	0	0	0	0.75282	1	12386	12386		42.474	12.633	1	10192000			41277	15749	28470	28523	46671	46671					0.12090435699042246
LIVELTAKN	9	Unmodified	_LIVELTAKN_					0	0	0			REV__ENST00000593523.1_1_19:41897706-41903233:-|nuORF	REV__ENST00000593523.1_1_19:41897706-41903233:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.8080749511719	2	500.8055	999.596446	1.1367	0.00056929	3.2515	0.0016284	4.3883	0.0021977	500.80691396471514	107.23	0.54973	107.23	106.88	107.43	0					24	10	3	0	0	0	0.80658	1	13766	13766		38.806	3.1879	1	389010	+		41278	20589	28471	28524	46672	46672					0.09663200137129024
LIVERSSKGT	10	Unmodified	_LIVERSSKGT_					0	0	0		nc|ENSG00000106636|O15498-2|YKT6;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	nc|ENSG00000106636|O15498-2|YKT6	nc|ENSG00000106636|O15498-2|YKT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.316763	1088.61897	-0.35128	-0.00019156	0.14645	7.9859E-05	-0.20484	-0.0001117	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.96822	1	10609	10609		49.536	7.1399	1	4936700			41279	2805	28472	28525	46673	46673					0.07820799534783873
LIVEVNKKN	9	Unmodified	_LIVEVNKKN_					0	0	0		nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7-4|MAGI1	nc|ENSG00000151276|Q96QZ7-4|MAGI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8238525390625	2	528.824224	1055.63389	-0.30478	-0.00016117	-2.2784	-0.0012049	-2.5832	-0.0013661	528.8228591148959	66.532	0.61368	66.562	66.463	67.077	0.030106					20	14	2	0	0	0	0.83071	1	7836	7836		37.159	2.0071	1	817590			41280	6191	28473	28526	46674	46674					0.10830291402771763
LIVFENESY	9	Unmodified	_LIVFENESY_					0	0	0		ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12;nc|ENSG00000148848|O43184-3|ADAM12;nc|ENSG00000148848|O43184-4|ADAM12;nc|ENSG00000148848|O43184-2|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8446655273438	2	557.276772	1112.53899	-0.26963	-0.00015026	-1.1883	-0.00066224	-1.458	-0.0008125	557.276385891128	54.501	0.385	54.351	54.156	54.541	-0.15036					15	10	2	0	0	0	0.024436	1	5909	5909		38.806	0	1	220790			41281	6056	28474	28527	46675	46675					-0.012776868590890444
LIVFFVTPL	9	Unmodified	_LIVFFVTPL_					0	0	0			REV__ENST00000514199.1_1_5:139944539-139945076:+|nuORF	REV__ENST00000514199.1_1_5:139944539-139945076:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8273315429688	2	524.825704	1047.63685	0.5509	0.00028913	1.4687	0.00077083	2.0196	0.00106	524.8263320992579	98.046	2.2952	97.91	97.423	99.718	-0.13625					172	55	6	0	0	0	1.0051	1	12194	12194		19.36	4.4951	1	14595000	+		41282	34168	28475	28528	46676	46676					0.1149416652756372
LIVFVVNLHSK	11	Unmodified	_LIVFVVNLHSK_					0	0	0		nc|ENSG00000100162|Q9NSP4-4|CENPM;nc|ENSG00000100162|Q9NSP4-2|CENPM;ENST00000396437.3_1_22:42341142-42343146:-|nuORF;ENSG00000100162|ENST00000215980|CENPM	nc|ENSG00000100162|Q9NSP4-4|CENPM	nc|ENSG00000100162|Q9NSP4-4|CENPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	634.8931274414062	2	634.889898	1267.76524	0.41338	0.00026245	3.8077	0.0024175	4.2211	0.0026799	634.8925865119255	104.35	1.0618	104.35	103.98	105.04	0					81	29	5	0	0	0	1.0075	1	13383	13383		35.152	0	1	1987300			41283	2144	28476	28529	46677	46677					0.14207101770648478
LIVGCGVSSLT	11	Unmodified	_LIVGCGVSSLT_					0	0	0		ENSG00000181790|ENST00000517894|ADGRB1;ENST00000518820.1_1_8:143561046-143604069:+|nuORF	ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.30322265625	2	524.788992	1047.56343	-0.23733	-0.00012455	-1.0959	-0.00057509	-1.3332	-0.00069964	524.7881609178021	64.133	0.3989	63.882	63.695	64.094	-0.2514					19	10	3	0	0	0	0.024776	1	7489	7489		25.574	0	1	224920			41284	9071	28477	28530	46678	46678					0.04155250022790824
LIVGCGVSSLT	11	Unmodified	_LIVGCGVSSLT_					0	0	0		ENSG00000181790|ENST00000517894|ADGRB1;ENST00000518820.1_1_8:143561046-143604069:+|nuORF	ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3030395507812	2	524.788992	1047.56343	1.7095	0.00089714	-3.1676	-0.0016623	-1.458	-0.00076516	524.7873257998917	63.921	0.39477	63.966	63.794	64.189	0.045502					19	10	2	0	0	0	0.024759	1	7400	7400		34.173	0	1	345960			41285	9071	28477	28530	46679	46679					0.04155250022790824
LIVGITIVKD	10	Unmodified	_LIVGITIVKD_					0	0	0			REV__ENSG00000152749|ENST00000376958|GPR180	REV__ENSG00000152749|ENST00000376958|GPR180	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8114624023438	2	535.844625	1069.6747	0.16403	8.7893E-05	0.074862	4.0114E-05	0.23889	0.00012801	535.844704695859	71.137	0.80806	71.137	70.948	71.756	0					29	20	3	0	0	0	0.03519	1	8704	8704		34.173	8.5985	1	201050	+		41286	24861	28478	28531	46680	46680					0.14264632722370152
LIVGVKMD	8	Unmodified	_LIVGVKMD_					0	0	0		ENST00000401075.3_1_1:31961199-31961370:-|nuORF	ENST00000401075.3_1_1:31961199-31961370:-|nuORF	ENST00000401075.3_1_1:31961199-31961370:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.23577880859375	2	437.756964	873.499375	-0.27304	-0.00011952	-3.6104	-0.0015805	-3.8834	-0.0017	437.7554433138676	58.61	0.31368	58.423	58.349	58.663	-0.18795					10	7	2	0	0	0	0.027866	1	6452	6452		19.36	11.129	1	133240			41287	13666	28479	28532	46681	46681					0.05756514656491163
LIVIGLSGG	9	Unmodified	_LIVIGLSGG_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7616271972656	2	414.763104	827.511654	-0.33499	-0.00013894	-3.3986	-0.0014096	-3.7336	-0.0015486	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	0.96855	1	10706	10706		26.796	0	1	36536000			41288	5700	28480	28533	46682	46682					0.09099874391188223
LIVIGLSGG	9	Unmodified	_LIVIGLSGG_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.7619934082031	2	414.763104	827.511654	0.29023	0.00012038	-4.0537	-0.0016813	-3.7634	-0.0015609	414.7613841509049	87.889	2.3301	87.752	87.289	89.619	-0.13744					147	55	6	0	0	0	0.88411	1	10756	10756		33.516	1.5607	1	22642000			41289	5700	28480	28533	46683	46683					0.09099874391188223
LIVKIKQQD	9	Unmodified	_LIVKIKQQD_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-4|KIF27	REV__nc|ENSG00000165115|Q86VH2-4|KIF27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8314819335938	2	542.839874	1083.66519	-0.035165	-1.9089E-05	1.6973	0.00092135	1.6621	0.00090226	542.8406096348477	71.622	0.46297	71.334	71.074	71.537	-0.28858					18	11	2	0	0	0	0.024381	1	8638	8638		37.159	5.2042	1	415030	+		41290	36871	28481	28534	46684	46684					0.1267086443685912
LIVKKPERFL	10	Unmodified	_LIVKKPERFL_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.89990234375	2	621.900266	1241.78598	-2.0128	-0.0012517	3.9959	0.0024851	1.9831	0.0012333	621.9024579436951	106.09	0.34456	105.96	105.77	106.12	-0.13279					29	13	3	0	0	0	1.1197	1	13195	13195		20.947	0	1	410230			41291	3685	28482	28535	46685	46685					0.1747569215033309
LIVKKSGLL	9	Unmodified	_LIVKKSGLL_					0	0	0			REV__ENST00000417226.6_1_3:128998609-129007820:+|nuORF	REV__ENST00000417226.6_1_3:128998609-129007820:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.83660888671875	2	485.836603	969.658653	-0.33934	-0.00016487	0.20807	0.00010109	-0.13127	-6.3777E-05	485.83661434416143	33.74	1.1642	33.54	33.209	34.373	-0.20019					79	29	4	0	0	0	0.72875	1	2417	2417		44.117	0	1	5154200	+		41292	32092	28483	28536	46686	46686					0.1726097127615276
LIVKRYLD	8	Unmodified	_LIVKRYLD_					0	0	0			REV__ENST00000600135.1_3_19:21407975-21428034:-|nuORF	REV__ENST00000600135.1_3_19:21407975-21428034:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.3235168457031	2	510.316035	1018.61752	-0.17948	-9.1593E-05	-0.4542	-0.00023178	-0.63368	-0.00032338	510.3155302966248	79.189	0.32549	79.208	79.028	79.354	0.018677					16	7	3	0	0	0	0.027866	1	9728	9728		20.482	0	1	222650	+		41293	35841	28484	28537	46687	46687					0.10895210236662933
LIVLHTVF	8	Unmodified	_LIVLHTVF_					0	0	0		KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;ENST00000581453.1_1_17:73492852-73494804:+|nuORF;ENST00000585105.5_1_17:73489877-73495164:+|nuORF	KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2878112792969	2	471.294571	940.574589	0.090416	4.2613E-05	0.92623	0.00043653	1.0166	0.00047914	471.29482142905385	94.487	0.25143	94.493	94.325	94.576	0.0059814					7	5	2	0	0	0	0.027866	1	11950	11950		28.254	1.4582	1	20302			41294	8767	28485	28538	46688	46688					0.1019244017921892
LIVLLVRPLW	10	Unmodified	_LIVLLVRPLW_					0	0	0			REV__ENST00000564480.1_2_16:19729090-19729441:-|nuORF	REV__ENST00000564480.1_2_16:19729090-19729441:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	611.3561401367188	2	611.407727	1220.8009	-0.43966	-0.00026881	-3.8754	-0.0023695	-4.3151	-0.0026383	611.4060367215133	94.469	0.24124	94.321	94.128	94.369	-0.14771					6	5	2	0	0	0	0.03519	1	11635	11635		11.511	7.4281	1	34299	+		41295	35249	28486	28539	46689	46689					0.19933184018327665
LIVLMHIL	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))LIVLM(Oxidation (M))HIL_		LIVLM(1)HIL		LIVLM(55)HIL	1	0	1		ENST00000461125.1_1_3:179304300-179305795:+|nuORF	ENST00000461125.1_1_3:179304300-179305795:+|nuORF	ENST00000461125.1_1_3:179304300-179305795:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.31109619140625	2	505.309364	1008.60417	-0.65874	-0.00033287	3.9071	0.0019743	3.2484	0.0016414	505.31127657292905	48.327	1.5047	48.327	48.003	49.508	0					101	42	5	0	0	0	0.8525	1	4928	4928		54.895	7.2372	1	8412400			41296	14676	28487	28540	46690	46690		511			0.1002163613305811
LIVLPQNPN	9	Unmodified	_LIVLPQNPN_					0	0	0			REV__nc|ENSG00000090861|P49588-2|AARS1	REV__nc|ENSG00000090861|P49588-2|AARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2749938964844	2	504.297842	1006.58113	-0.40555	-0.00020452	0.032576	1.6428E-05	-0.37297	-0.00018809	504.2975954032648	56.893	0.43619	56.893	56.712	57.148	0					26	12	3	0	0	0	0.024436	1	6346	6346		30.504	0	1	393560	+		41297	20886	28488	28541	46691	46691					0.0781033333993264
LIVLSNCCYV	10	Unmodified	_LIVLSNCCYV_					0	0	0		EXOC2|p.L721V|1|0.07|ENSG00000112685|chr6:549252-549252|G/C|missense_variant	EXOC2|p.L721V|1|0.07|ENSG00000112685|chr6:549252-549252|G/C|missense_variant	EXOC2|p.L721V|1|0.07|ENSG00000112685|chr6:549252-549252|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.7853393554688	2	563.785395	1125.55624	-0.4157	-0.00023436	0.37219	0.00020983	-0.04351	-2.4531E-05	563.7854471231282	65.329	1.3053	65.094	64.49	65.796	-0.2345					75	31	4	0	0	0	0.71272	1	7451	7451		66.429	0.6261	1	1760800			41298	17627	28489	28542	46692	46692					-0.0015180584932750207
LIVPMLWW	8	Unmodified	_LIVPMLWW_					0	0	0			REV__AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|1|1|sense	REV__AluSc_dup26247|chr14:55143427-55143722:-|1.651647276752361|0.0255733500930304|6.01|521.0|1|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7796020507812	2	529.298799	1056.58304	-0.52807	-0.00027951	-1.4981	-0.00079296	-2.0262	-0.0010725	529.7989100149915	85.718	0.92249	85.66	85.228	86.15	-0.057617					34	21	2	0	0	0	0.027866	1	10762	10762		43.626	1.2299	1	108970	+		41299	19118	28490	28543	46693	46693					0.05701670824191751
LIVPQKGNLLI	11	Unmodified	_LIVPQKGNLLI_					0	0	0		ENSG00000113924|ENST00000283871|HGD;HGD|p.N177Mfs*14|1|0.07|ENSG00000113924|chr3:120646994-120646994|G/-|frameshift_variant	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	604.366943359375	2	604.392273	1206.76999	-1.0452	-0.00063169	1.6685	0.0010085	0.62337	0.00037676	604.3933529442832	103.31	0.17234	103.31	103.23	103.4	-0.0046082					6	3	2	0	0	0	0.024776	1	13175	13175		9.7057	0	1	26101			41300	3335	28491	28544	46694	46694					0.17487985913430748
LIVRAYST	8	Unmodified	_LIVRAYST_					0	0	0			REV__ENSG00000177186|ENST00000317965|OR2M7	REV__ENSG00000177186|ENST00000317965|OR2M7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7730407714844	2	461.77146	921.528367	1.1331	0.00052325	1.1899	0.00054948	2.3231	0.0010727	461.77169065097365	98.477	0.98392	98.475	98.139	99.123	-0.0020752					47	22	3	0	0	0	0.91239	1	12497	12497		50.025	2.1089	1	682700	+		41301	27088	28492	28545	46695	46695					0.064463752771303
LIVREVAM	8	Unmodified	_LIVREVAM_					0	0	0		ENSG00000185504|ENST00000327787|FAAP100;nc|ENSG00000185504|Q0VG06-3|FAAP100;nc|ENSG00000185504|Q0VG06-2|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77752685546875	2	465.775688	929.536823	-0.52619	-0.00024508	4.4718	0.0020829	3.9456	0.0018378	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	1.0009	1	9734	9734		37.159	5.6293	1	1029300			41302	9446	28493	28546	46696	46696					0.06923605922111165
LIVSFLLLM	9	Unmodified	_LIVSFLLLM_					0	0	0			REV__ENSG00000134389|ENST00000256785|CFHR5	REV__ENSG00000134389|ENST00000256785|CFHR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8269653320312	2	524.827389	1047.64023	0.5509	0.00028913	-1.7426	-0.00091458	-1.1917	-0.00062545	524.8263320992579	98.046	2.2952	97.91	97.423	99.718	-0.13625					172	55	6	0	0	0	0.90698	1	12181	12181		31.955	2.1133	1	14595000	+		41303	23448	28494	28547	46697	46697					0.11831093309933749
LIVSLASY	8	Unmodified	_LIVSLASY_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2557678222656	2	433.255111	864.49567	0.082102	3.5571E-05	-1.5381	-0.00066638	-1.456	-0.00063081	433.25533421616046	102.79	2.2075	102.8	102.41	104.62	0.0054245					176	55	6	0	0	0	1.0133	2	13124	13124;13136		35.201	0	1	219000000			41304	4237	28495	28548	46698;46699	46698					0.058001681542691585
LIVSLASY	8	Unmodified	_LIVSLASY_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.25469970703125	2	433.255111	864.49567	0.5502	0.00023838	-0.69107	-0.00029941	-0.14087	-6.1032E-05	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	1.0133	1	13108	13108		35.201	0	1	237570000			41305	4237	28495	28548	46700	46700					0.058001681542691585
LIVSSAVIE	9	Unmodified	_LIVSSAVIE_					0	0	0			REV__ENST00000562017.1_1_16:56643060-56643138:+|nuORF	REV__ENST00000562017.1_1_16:56643060-56643138:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7779235839844	2	465.778951	929.543348	-0.52618	-0.00024508	-2.5328	-0.0011797	-3.059	-0.0014248	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.85329	1	9757	9757		35.618	11.416	1	1029300	+		41306	35187	28496	28549	46701	46701					0.07575822354465345
LIVSWFLV	8	Unmodified	_LIVSWFLV_					0	0	0			REV__ENST00000446228.5_1_2:162758621-162834241:+|nuORF	REV__ENST00000446228.5_1_2:162758621-162834241:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7947998046875	2	488.796946	975.57934	0.13584	6.6396E-05	-4.3367	-0.0021198	-4.2009	-0.0020534	488.794668321873	72.537	1.1515	72.537	72.211	73.362	0					74	28	4	0	0	0	0.85409	1	8836	8836		54.765	6.8491	1	2638100	+		41307	24323	28497	28550	46702	46702					0.0905732432199784
LIVTATQLVV	10	Unmodified	_LIVTATQLVV_					0	0	0			REV__ENST00000398145.6_2_22:26877999-26878053:-|nuORF	REV__ENST00000398145.6_2_22:26877999-26878053:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.296875	2	528.8368	1055.65905	-0.92649	-0.00048996	0.74263	0.00039273	-0.18385	-9.7229E-05	528.8370156089235	56.297	0.46473	56.297	56.07	56.535	0					19	12	2	0	0	0	0.03519	1	6233	6233		45.972	3.5761	1	154240	+		41308	31799	28498	28551	46703	46703					0.1334434620534921
LIVTIDKE	8	Unmodified	_LIVTIDKE_					0	0	0			REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7780456542969	2	465.778951	929.543348	-0.52618	-0.00024508	-2.5328	-0.0011797	-3.059	-0.0014248	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	1.0338	1	9886	9886		31.955	5.1588	1	1029300	+		41309	22824	28499	28552	46704	46704					0.07575822354465345
LIVTLALVL	9	Unmodified	_LIVTLALVL_					0	0	0			REV__ENSG00000117154|ENST00000251296|IGSF21	REV__ENSG00000117154|ENST00000251296|IGSF21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.83428955078125	2	477.833529	953.652505	0.39262	0.00018761	0.073048	3.4905E-05	0.46566	0.00022251	477.8334281447745	105.79	1.1708	105.79	105.37	106.54	-0.0013199					118	39	4	0	0	0	1.0281	1	13559	13559		14.664	0.88877	1	1956600	+		41310	22332	28500	28553	46705	46705					0.17382453044604063
LIVTMSCL	8	Unmodified	_LIVTMSCL_					0	0	0		ENSG00000121933|ENST00000369716|TMIGD3;nc|ENSG00000121933|P0DMS9|TMIGD3	ENSG00000121933|ENST00000369716|TMIGD3	ENSG00000121933|ENST00000369716|TMIGD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.2540283203125	2	440.23755	878.460547	-1.1395	-0.00050164	1.9786	0.00087106	0.83914	0.00036942	440.23825674568167	37.981	1.0323	37.981	37.523	38.555	0					65	29	3	0	0	0	0.027866	1	3147	3147		28.254	0.37203	1	989350			41311	3898	28501	28554	46706	46706					0.016454660304589197
LIVTRLAM	8	Unmodified	_LIVTRLAM_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.78704833984375	2	458.786056	915.557558	-0.3482	-0.00015975	2.8329	0.0012997	2.4847	0.0011399	458.78731010977094	92.159	2.2616	92.159	91.383	93.645	0					168	53	6	0	0	0	1.0338	1	11703	11703		31.955	2.1133	1	28740000	+		41312	24671	28502	28555	46707	46707					0.09640196301768356
LIVTRLAM	8	Unmodified	_LIVTRLAM_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.787841796875	2	458.786056	915.557558	0.65247	0.00029934	1.8977	0.00087062	2.5501	0.00117	458.7868940578265	92.184	1.9062	92.193	91.701	93.608	0.0094147					162	45	6	0	0	0	1.0338	3	11585	11585;11620;11644		31.955	2.1133	1	27672000	+		41313	24671	28502	28555	46708;46709;46710	46708					0.09640196301768356
LIVTRLAM	8	Unmodified	_LIVTRLAM_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.787353515625	2	458.786056	915.557558	-1.5662	-0.00071855	4.0915	0.0018771	2.5253	0.0011586	458.7879005444892	92.294	1.8204	92.151	91.661	93.481	-0.14356					148	42	6	0	0	0	1.0338	2	11311	11311;11335		31.955	2.1133	1	24204000	+		41314	24671	28502	28555	46711;46712	46711					0.09640196301768356
LIVTRLAM	8	Unmodified	_LIVTRLAM_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.78790283203125	2	458.786056	915.557558	-0.2269	-0.0001041	2.7104	0.0012435	2.4835	0.0011394	458.7872764164579	92.323	1.6929	92.2	91.76	93.453	-0.12242					146	39	6	0	0	0	1.0009	1	11387	11387		37.159	5.2042	1	20312000	+		41315	24671	28502	28555	46713	46713					0.09640196301768356
LIVTRLAM	8	Unmodified	_LIVTRLAM_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.78778076171875	2	458.786056	915.557558	0.21652	9.9336E-05	2.3973	0.0010999	2.6138	0.0011992	458.78713516574805	92.333	1.7818	92.192	91.704	93.485	-0.14131					127	41	5	0	0	0	1.0574	1	11298	11298		24.203	2.5004	1	18009000	+		41316	24671	28502	28555	46714	46714					0.09640196301768356
LIVTRLLD	8	Unmodified	_LIVTRLLD_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77447509765625	2	471.80276	941.590967	0.099586	4.6985E-05	-0.4434	-0.0002092	-0.34381	-0.00016221	471.8023722976629	36.655	0.83319	36.6	36.303	37.136	-0.054779					42	21	3	0	0	0	0.027866	1	2945	2945		13.775	0	1	828970	+		41317	22058	28503	28556	46715	46715					0.11783521345330428
LIVVAWLVV	9	Unmodified	_LIVVAWLVV_					0	0	0		ENSG00000164082|ENST00000395052|GRM2;ENST00000296479.9_1_3:51747995-51752125:+|nuORF	ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3190002441406	2	506.333696	1010.65284	-0.47569	-0.00024086	-1.4829	-0.00075086	-1.9586	-0.00099172	506.33253568727207	53.076	0.14944	52.929	52.873	53.023	-0.14723					5	3	2	0	0	0	0.024289	1	5695	5695		49.211	0	1	64369			41318	7207	28504	28557	46716	46716					0.14793872764460048
LIWDMYEAVKT	11	Unmodified	_LIWDMYEAVKT_					0	0	0			REV__ENSG00000164344|ENST00000264690|KLKB1	REV__ENSG00000164344|ENST00000264690|KLKB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.26934814453125	3	456.900451	1367.67952	-0.50529	-0.00023087	3.52	0.0016083	3.0147	0.0013774	456.90192402938527	47.695	0.33949	47.754	47.522	47.862	0.059097					17	10	2	0	0	0	0.024734	1	4724	4724		21.78	0.74819	1	606050	+		41319	25743	28505	28558	46717	46717					0.010391488027835294
LIWFRIPI	8	Unmodified	_LIWFRIPI_					0	0	0			REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.311279296875	2	529.331488	1056.64842	-0.41802	-0.00022127	-2.7616	-0.0014618	-3.1797	-0.0016831	529.3290030390343	60.916	0.26841	60.71	60.581	60.849	-0.20599					9	6	2	0	0	0	0.027866	1	6792	6792		26.796	0	1	68867	+		41320	24752	28506	28559	46718	46718					0.12236408341573224
LIWGCKGLL	9	Unmodified	_LIWGCKGLL_					0	0	0		nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7953796386719	2	501.793881	1001.57321	-0.0037369	-1.8751E-06	1.9639	0.0009855	1.9602	0.00098362	501.79478656848715	50.013	0.75963	50.094	49.584	50.344	0.08099					70	21	4	0	0	0	0.21579	1	5126	5126		86.935	5.2186	1	9564100			41321	8582	28507	28560	46719	46719					0.07248482818829416
LIWKYQLY	8	Unmodified	_LIWKYQLY_					0	0	0		nc|ENSG00000184029|P56555|DSCR4	nc|ENSG00000184029|P56555|DSCR4	nc|ENSG00000184029|P56555|DSCR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2666625976562	2	563.81841	1125.62227	-0.23281	-0.00013126	3.3072	0.0018647	3.0744	0.0017334	563.8203273898991	73.497	0.47179	73.22	73.01	73.482	-0.2769					20	11	2	0	0	0	0.027866	1	8614	8614		25.45	3.7478	1	383770			41322	18582	28508	28561	46720	46720					0.06448094379425129
LIWPGGALE	9	Unmodified	_LIWPGGALE_					0	0	0			REV__ENST00000344773.6_1_2:28561412-28561616:+|nuORF	REV__ENST00000344773.6_1_2:28561412-28561616:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2635803222656	2	478.26601	954.517468	-0.95011	-0.00045441	-4.3678	-0.0020889	-5.3179	-0.0025434	478.26382117450925	38.985	0.76754	39.009	38.688	39.455	0.023727					49	20	4	0	0	0	0.36105	1	3245	3245		68.485	0	1	6271100	+		41323	30691	28509	28562	46721	46721					0.03838972902849491
LIWQMAALFV	10	Unmodified	_LIWQMAALFV_					0	0	0			REV__nc|ENSG00000197429|Q9Y573-2|IPP	REV__nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.7747192382812	2	596.33337	1190.65219	-1.2661	-0.00075503	3.5403	0.0021112	2.2741	0.0013561	596.3354019511468	69.187	0.33757	68.926	68.747	69.084	-0.26166					11	7	2	0	0	0	0.03519	1	7996	7996		23.042	0	1	73446	+		41324	28302	28510	28563	46722	46722					0.06448710053064133
LIWYSVGFL	9	Unmodified	_LIWYSVGFL_					0	0	0		HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|63|2|anti-sense	HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|63|2|anti-sense	HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|63|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3025512695312	2	549.305136	1096.59572	-0.61842	-0.0003397	-3.5517	-0.001951	-4.1701	-0.0022907	549.3031625449072	78.887	1.7112	78.695	78.298	80.009	-0.1921					129	40	6	0	0	0	0.52323	1	9729	9729		57.811	6.6186	1	14463000			41325	17709	28511	28564	46723	46723					0.051284054880852636
LIYFFHFF	8	Unmodified	_LIYFFHFF_					0	0	0			REV__ENSG00000010282|ENST00000441594|HHATL	REV__ENSG00000010282|ENST00000441594|HHATL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3133544921875	2	567.294571	1132.57459	-0.067938	-3.8541E-05	0.23033	0.00013066	0.16239	9.2123E-05	567.2956583833386	67.769	0.24671	67.531	67.422	67.669	-0.23814					7	5	2	0	0	0	0.027866	1	7799	7799		33.493	17.486	1	53809	+		41326	19901	28512	28565	46724	46724					0.013604401792235876
LIYFQLNL	8	Unmodified	_LIYFQLNL_					0	0	0			REV__ENST00000174618.4_1_17:2304187-2304379:-|nuORF	REV__ENST00000174618.4_1_17:2304187-2304379:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7516479492188	2	512.29731	1022.58007	-0.020053	-1.0273E-05	-3.9802	-0.002039	-4.0002	-0.0020493	512.2951789641945	69.74	0.62062	69.489	69.196	69.817	-0.25063					33	14	3	0	0	0	0.027866	1	8065	8065		20.482	4.0087	1	626490	+		41327	29285	28513	28566	46725	46725					0.0696811897103089
LIYGNSGIV	9	Unmodified	_LIYGNSGIV_					0	0	0			REV__ENSG00000181090|ENST00000460843|EHMT1	REV__ENSG00000181090|ENST00000460843|EHMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.26373291015625	2	468.263468	934.512382	-0.20413	-9.5586E-05	-0.027243	-1.2757E-05	-0.23137	-0.00010834	468.2632989720304	43.521	1.1962	43.408	43.071	44.267	-0.11253					58	32	3	0	0	0	0.62163	1	4028	4028		51.335	0	1	5788200	+		41328	27384	28514	28567	46726	46726					0.04250669040243338
LIYHVLLT	8	Unmodified	_LIYHVLLT_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2825927734375	2	486.299853	970.585153	-0.67553	-0.00032851	-2.9004	-0.0014105	-3.5759	-0.001739	486.29831186971296	65.201	0.51556	65.201	64.944	65.46	0					26	14	2	0	0	0	0.027866	1	7705	7705		29.842	7.8817	1	1536800			41329	9914	28515	28568	46727	46727					0.09868422833653767
LIYIIFFVLFL	11	Unmodified	_LIYIIFFVLFL_					0	0	0			REV__ENSG00000255582|ENST00000542433|OR10G2	REV__ENSG00000255582|ENST00000542433|OR10G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.62353515625	3	467.624587	1399.85193	0.094959	4.4405E-05	-1.8456	-0.00086306	-1.7507	-0.00081866	467.62365324391635	107.08	0.60744	106.96	106.74	107.35	-0.12381					60	20	4	0	0	0	1.0855	1	13309	13309		15.333	0	1	609420	+		41330	29070	28516	28569	46728	46728					0.16800088272498215
LIYLRITDI	9	Unmodified	_LIYLRITDI_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3399658203125	2	560.342249	1118.66995	-0.38796	-0.00021739	-3.4302	-0.0019221	-3.8182	-0.0021395	560.3401809188904	101.1	1.8443	101.11	100.79	102.63	0.0090256					135	42	6	0	0	0	0.6504	1	12930	12930		49.442	1.7842	1	14349000	+		41331	19927	28517	28570	46729	46729					0.11535748579603933
LIYNETKGN	9	Unmodified	_LIYNETKGN_					0	0	0			REV__ENSG00000182271|ENST00000328886|TMIGD1	REV__ENSG00000182271|ENST00000328886|TMIGD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2769165039062	2	526.274564	1050.53457	-0.34464	-0.00018137	4.0713	0.0021426	3.7266	0.0019612	526.2766292286955	94.576	1.2287	94.576	94.072	95.301	-0.00022888					75	26	4	0	0	0	0.40693	1	12029	12029		65.465	5.3471	1	2688900	+		41332	27465	28518	28571	46730	46730					0.011328487180207958
LIYNLNLIY	9	Unmodified	_LIYNLNLIY_					0	0	0			REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2677612304688	2	569.828975	1137.6434	0.096762	5.5138E-05	0.74246	0.00042308	0.83922	0.00047821	569.8292269996606	78.496	0.34419	78.34	78.17	78.514	-0.15591					10	7	2	0	0	0	0.024354	1	9368	9368		57.811	4.4598	1	50459	+		41333	29926	28519	28572	46731	46731					0.08008059688290814
LIYNLNLIY	9	Unmodified	_LIYNLNLIY_					0	0	0			REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.828975	1137.6434	-0.87645	-0.00049943	0.79942	0.00045553	-0.077037	-4.3898E-05	569.8292670526579	78.552	0.62921	78.552	78.363	78.993	0	0.066441	0.00046467	NaN	57.811	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153300	+		41334	29926	28519	28572							0.08008059688290814
LIYNLNLIY	9	Unmodified	_LIYNLNLIY_					0	0	0			REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.828975	1137.6434	0.053608	3.0547E-05	0.039636	2.2586E-05	0.093244	5.3133E-05	569.8289589419472	78.755	0.751	78.563	78.298	79.049	-0.19211	0.077002	-0.00040122	NaN	57.811	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120850	+		41335	29926	28519	28572							0.08008059688290814
LIYNLNLIY	9	Unmodified	_LIYNLNLIY_					0	0	0			REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.828975	1137.6434	-0.83847	-0.00047779	0.78756	0.00044877	-0.050917	-2.9014E-05	569.8292662310711	78.562	0.83278	78.577	78.438	79.271	0.015907	0.091717	0.00045115	NaN	57.811	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132550	+		41336	29926	28519	28572							0.08008059688290814
LIYNLNLIY	9	Unmodified	_LIYNLNLIY_					0	0	0			REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	REV__ENST00000287957.3_1_7:92086815-92086875:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	569.828975	1137.6434	0.08439	4.8088E-05	0.30269	0.00017248	0.38708	0.00022057	569.8289390060028	78.651	0.30285	78.396	78.254	78.557	-0.25471	-0.08936	-0.00010143	NaN	57.811	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39249	+		41337	29926	28519	28572							0.08008059688290814
LIYPVPLP	8	Unmodified	_LIYPVPLP_					0	0	0			REV__ENST00000589123.5_2_19:3464049-3464370:+|nuORF	REV__ENST00000589123.5_2_19:3464049-3464370:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7428283691406	2	456.283672	910.552791	-0.27067	-0.0001235	-4.0796	-0.0018614	-4.3502	-0.0019849	456.28170870328137	46.004	0.37239	45.743	45.557	45.93	-0.26118					12	9	2	0	0	0	0.027866	1	4381	4381		43.626	10.133	1	94071	+		41338	35666	28520	28573	46732	46732					0.09393635430660652
LIYRDLPLS	9	Unmodified	_LIYRDLPLS_					0	0	0			REV__ENSG00000070614|ENST00000261797|NDST1	REV__ENSG00000070614|ENST00000261797|NDST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3165283203125	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.62163	1	10861	10861		51.335	3.6781	1	3438300	+		41339	20431	28521	28574	46733	46733					0.08222889028479585
LIYRLQQVLFW	11	Unmodified	_LIYRLQQVLFW_					0	0	0			REV__ENSG00000108733|ENST00000225873|PEX12	REV__ENSG00000108733|ENST00000225873|PEX12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.81353759765625	3	493.622128	1477.84456	-0.086892	-4.2892E-05	-2.6492	-0.0013077	-2.7361	-0.0013506	493.6208170197396	30.269	1.2562	30.12	29.792	31.048	-0.14952					58	29	3	0	0	0	0.024845	1	1871	1871		14.694	5.8944	1	803840	+		41340	21758	28522	28575	46734	46734					0.12474748724775964
LIYRSKAR	8	Unmodified	_LIYRSKAR_					0	0	0		PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant;ENSG00000166450|ENST00000389286|PRTG	PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7694396972656	2	503.811451	1005.60835	-0.32851	-0.00016551	-0.46626	-0.00023491	-0.79476	-0.00040041	503.8112733135137	43.114	0.40126	42.974	42.809	43.21	-0.13929					18	10	2	0	0	0	0.027866	1	4018	4018		26.796	0	1	135160			41341	7565	28523	28576	46735	46735					0.10576861670983817
LIYSLYPVL	9	Unmodified	_LIYSLYPVL_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.3319702148438	2	540.820618	1079.62668	-0.048917	-2.6455E-05	2.9064	0.0015719	2.8575	0.0015454	540.821915974841	79.848	0.87657	79.629	79.202	80.079	-0.21923					28	20	2	0	0	0	0.024506	1	9505	9505		30.504	1.3541	1	77822	+		41342	21540	28524	28577	46736	46736					0.09005558802323321
LIYVIPFLI	9	Unmodified	_LIYVIPFLI_					0	0	0			REV__ENSG00000183185|ENST00000472788|GABRR3	REV__ENSG00000183185|ENST00000472788|GABRR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.302734375	2	545.849179	1089.6838	-0.22717	-0.000124	-3.9414	-0.0021514	-4.1685	-0.0022754	545.8470503404078	63.829	0.56159	63.571	63.313	63.875	-0.25824					21	14	2	0	0	0	0.024389	1	7182	7182		21.702	0.7554	1	181570	+		41343	27549	28525	28578	46737	46737					0.14255026078694755
LIYVVNDW	8	Unmodified	_LIYVVNDW_					0	0	0			REV__nc|ENSG00000122550|Q8IXQ5-2|KLHL7;REV__ENSG00000122550|ENST00000339077|KLHL7	REV__ENSG00000122550|ENST00000339077|KLHL7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2537841796875	2	511.271293	1020.52803	-0.39268	-0.00020076	4.4038	0.0022515	4.0111	0.0020507	511.2735852550746	54.476	0.43426	54.34	54.183	54.618	-0.13616					22	11	3	0	0	0	0.027866	1	5782	5782		37.028	19.664	1	380280	+		41344	36623;22652	28526	28579	46738	46738					0.01858955557270292
LIYYLQSI	8	Unmodified	_LIYYLQSI_					0	0	0		nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant;ENSG00000188869|ENST00000359440|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3155212402344	2	506.789318	1011.56408	-0.39221	-0.00019877	-4.0516	-0.0020533	-4.4438	-0.0022521	506.78734400094777	63.225	0.39586	62.986	62.736	63.132	-0.23926					16	9	2	0	0	0	0.027866	1	7340	7340		40.573	7.057	1	154450			41345	9762	28527	28580	46739	46739					0.058764127341419226
LIYYRAKK	8	Unmodified	_LIYYRAKK_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8060302734375	2	527.824027	1053.6335	-0.55285	-0.00029181	1.5831	0.00083558	1.0302	0.00054377	527.8237926050589	49.06	1.4238	49.06	48.344	49.768	0					134	39	6	0	0	0	0.027866	1	5161	5161		37.028	6.5248	1	3161500			41346	4109	28528	28581	46740	46740					0.10882916473542537
LKAADTIGY	9	Unmodified	_LKAADTIGY_					0	0	0		nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1	nc|ENSG00000021826|P31327-2|CPS1	nc|ENSG00000021826|P31327-2|CPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	477.25604248046875	2	476.260925	950.507297	0.1954	9.3061E-05	1.1233	0.000535	1.3187	0.00062806	476.26085861360974	41.688	0.62546	41.565	41.227	41.853	-0.12299					20	16	2	0	0	0	0.024323	1	3674	3674		44.117	5.3107	1	130060			41347	962	28529	28582	46741	46741					0.030063651776117695
LKAANQLFSL	10	Unmodified	_LKAANQLFSL_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2249145507812	2	552.824224	1103.63389	-0.45257	-0.00025019	3.3105	0.0018301	2.8579	0.0015799	552.8258019713754	31.121	0.55778	30.88	30.627	31.185	-0.24109					21	13	2	0	0	0	0.03519	1	2030	2030		24.519	6.1948	1	155930	+		41348	20054	28530	28583	46742	46742					0.08622291402753035
LKAAVTPE	8	Unmodified	_LKAAVTPE_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.72216796875	2	414.744911	827.475269	0.35011	0.00014521	2.1206	0.00087949	2.4707	0.0010247	414.74507603750084	42.851	0.54393	42.877	42.605	43.148	0.026012					27	14	4	0	0	0	0.027866	1	3871	3871		3.6843	2.4792	1	97963			41349	9560	28531	28584	46743	46743					0.05462997494475985
LKAAVTPE	8	Unmodified	_LKAAVTPE_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	414.744911	827.475269	0.68005	0.00028205	0.15095	6.2608E-05	0.831	0.00034465	414.74475086956505	42.803	0.4698	42.803	42.605	43.075	0	-0.039304	-0.0007575	NaN	1.0954	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167330			41350	9560	28531	28584							0.05462997494475985
LKAAVTPE	8	Unmodified	_LKAAVTPE_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	414.744911	827.475269	0.34031	0.00014114	3.0619	0.0012699	3.4022	0.0014111	414.7450906446081	42.987	0.39533	42.848	42.631	43.027	-0.13929	0.0052453	0.0016571	NaN	1.0954	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125720			41351	9560	28531	28584							0.05462997494475985
LKACMGEL	8	Unmodified	_LKACMGEL_					0	0	0		ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.72052001953125	2	432.719524	863.424495	0.23941	0.0001036	1.9634	0.00084961	2.2028	0.00095321	432.72025659621454	30.771	1.8285	30.619	30.298	32.127	-0.15231					91	44	4	0	0	0	0.97924	1	1996	1996		40.573	4.9543	1	2000600			41352	3180	28532	28585	46744	46744					-0.01267991146391978
LKADFELQL	9	Unmodified	_LKADFELQL_					0	0	0			REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152	REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8017578125	2	538.802957	1075.59136	0.0041487	2.2353E-06	-1.3471	-0.00072584	-1.343	-0.00072361	538.8016496239434	87.804	0.63877	87.668	87.388	88.027	-0.13614					34	15	4	0	0	0	0.091713	1	10710	10710		113.41	6.4041	1	1162300	+		41353	28502	28533	28586	46745	46745					0.05658896274530889
LKAEIEAEL	9	Unmodified	_LKAEIEAEL_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000529408.1_1_12:85431954-85441296:+|nuORF;ENST00000525971.6_1_12:85431954-85518298:+|nuORF	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2862243652344	2	508.28714	1014.55973	-0.84588	-0.00042995	0.88435	0.0004495	0.038466	1.9552E-05	508.2875091966944	58.27	1.3365	58.095	57.825	59.161	-0.1749					101	36	5	0	0	0	0.014918	2	6556	6556;6568		190.52	0	1	16857000			41354	4720	28534	28587	46746;46747	46746					0.05302903520566815
LKAEIEAEL	9	Unmodified	_LKAEIEAEL_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000529408.1_1_12:85431954-85441296:+|nuORF;ENST00000525971.6_1_12:85431954-85518298:+|nuORF	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2862243652344	2	508.28714	1014.55973	-0.091541	-4.6529E-05	-0.68926	-0.00035034	-0.7808	-0.00039687	508.28685192013046	58.238	1.073	58.061	57.795	58.868	-0.17776					63	26	5	0	0	0	0.014918	1	6391	6391		162.25	13.266	1	3611000			41355	4720	28534	28587	46748	46748					0.05302903520566815
LKAEIEAEL	9	Unmodified	_LKAEIEAEL_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000529408.1_1_12:85431954-85441296:+|nuORF;ENST00000525971.6_1_12:85431954-85518298:+|nuORF	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2847595214844	2	508.28714	1014.55973	-0.19749	-0.00010038	0.10567	5.371E-05	-0.091818	-4.667E-05	508.28712281739155	58.147	1.016	57.956	57.48	58.496	-0.19018					59	25	3	0	0	0	0.015064	1	6390	6390		190.52	0	1	3701300			41356	4720	28534	28587	46749	46749					0.05302903520566815
LKAEKKPL	8	Unmodified	_LKAEKKPL_					0	0	0		ENST00000517719.5_1_8:37963213-37963649:+|nuORF	ENST00000517719.5_1_8:37963213-37963649:+|nuORF	ENST00000517719.5_1_8:37963213-37963649:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2667541503906	2	463.805303	925.596052	0.91925	0.00042635	2.6106	0.0012108	3.5298	0.0016371	463.80676106274234	42.915	0.18015	42.944	42.829	43.009	0.02932					7	4	2	0	0	0	0.027866	1	3919	3919		15.642	4.7763	1	63263			41357	15916	28535	28588	46750	46750					0.13027825207950627
LKAELVQL	8	Unmodified	_LKAELVQL_					0	0	0		RNF217-TPD52L1|3|fusion;RNF217-TPD52L1|2|fusion;RNF217-TPD52L1|1|fusion;nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	RNF217-TPD52L1|3|fusion	RNF217-TPD52L1|3|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2903137207031	2	457.289485	912.564418	0.44168	0.00020197	-1.111	-0.00050803	-0.66929	-0.00030606	457.2890456844276	93.866	3.011	93.866	93.303	96.314	0					211	71	5	0	0	0	0.20995	1	12072	12072		138.83	0	1	43644000			41358	37842	28536	28589	46751	46751					0.10463832454001931
LKAFRRLV	8	Unmodified	_LKAFRRLV_					0	0	0		nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5	nc|ENSG00000069998|Q9BXW7-2|HDHD5	nc|ENSG00000069998|Q9BXW7-2|HDHD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8009948730469	2	501.832186	1001.64982	-0.049981	-2.5082E-05	4.3362	0.002176	4.2862	0.002151	501.83433378610226	46.362	0.16689	46.414	46.274	46.441	0.051399					7	4	2	0	0	0	0.027866	1	4495	4495		26.796	0	1	351050			41359	1411	28537	28590	46752	46752					0.1490604243032294
LKAFVGYDI	9	Unmodified	_LKAFVGYDI_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3060302734375	2	513.286943	1024.55933	-0.58397	-0.00029975	1.4863	0.00076289	0.90232	0.00046315	513.7905051218603	53.123	0.88438	52.976	52.645	53.529	-0.14723					38	23	2	0	0	0	0.022756	1	5789	5789		90.777	16.802	1	313930	+		41360	22916	28538	28591	46753	46753					0.04803528591378381
LKAGAIALV	9	Unmodified	_LKAGAIALV_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2864685058594	2	428.286746	854.558939	-0.77509	-0.00033196	0.87774	0.00037593	0.10265	4.3965E-05	428.286988656732	63.009	1.0071	63.009	62.729	63.736	0					65	26	4	0	0	0	0.70186	1	7351	7351		45.952	1.8352	1	5906900	+		41361	22537	28539	28592	46754	46754					0.12584153662169228
LKAGFHPTL	9	Unmodified	_LKAGFHPTL_					0	0	0		ENST00000309982.9_2_8:104240677-104240884:+|nuORF	ENST00000309982.9_2_8:104240677-104240884:+|nuORF	ENST00000309982.9_2_8:104240677-104240884:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.28826904296875	2	492.287277	982.560001	1.2068	0.0005941	-0.22356	-0.00011006	0.98325	0.00048404	492.28674156014347	59.395	0.66267	59.195	59.028	59.691	-0.20016					18	17	2	0	0	0	0.024427	1	6799	6799		19.997	0	1	109650			41362	12050	28540	28593	46755	46755					0.06802368031083006
LKAGRFIL	8	Unmodified	_LKAGRFIL_					0	0	0			REV__ENST00000315596.14_2_13:33349708-33349795:+|nuORF	REV__ENST00000315596.14_2_13:33349708-33349795:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.26824951171875	2	459.300188	916.585822	0.10172	4.672E-05	-1.4646	-0.00067268	-1.3628	-0.00062596	459.2991456569262	48.348	0.42842	48.161	47.94	48.368	-0.18684					18	11	2	0	0	0	0.027866	1	4786	4786		12.959	0	1	282010	+		41363	30269	28541	28594	46756	46756					0.12419262273363074
LKAIEDLPK	9	Unmodified	_LKAIEDLPK_					0	0	0		ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3038940429688	2	513.813325	1025.6121	-1.4857	-0.00076336	-1.2345	-0.00063429	-2.7202	-0.0013977	513.8124758323784	30.077	0.6048	30.077	29.611	30.216	0					18	14	2	0	0	0	0.024288	1	1867	1867		52.937	8.8199	1	155390			41364	1650	28542	28595	46757	46757					0.10031486654179389
LKAIEDLPK	9	Unmodified	_LKAIEDLPK_					0	0	0		ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3037719726562	2	513.813325	1025.6121	-1.3817	-0.00070995	-1.5043	-0.00077295	-2.8861	-0.0014829	513.8123654125615	29.755	0.48006	29.833	29.527	30.007	0.078344					18	11	3	0	0	0	0.024288	1	1763	1763		71.877	18.941	1	147800			41365	1650	28542	28595	46758	46758					0.10031486654179389
LKAIEVLR	8	Unmodified	_LKAIEVLR_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.30828857421875	2	471.310752	940.606951	-0.037984	-1.7902E-05	-3.353	-0.0015803	-3.391	-0.0015982	471.3092114228552	17.348	0.7011	17.141	16.963	17.664	-0.20669					34	13	4	0	0	0	0.99042	1	157	157		38.806	1.7777	1	2630800			41366	5309	28543	28596	46759	46759					0.13427227582235446
LKAIRPEEV	9	Unmodified	_LKAIRPEEV_					0	0	0			REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3160400390625	2	527.816399	1053.61824	-1.5048	-0.00079426	-0.41731	-0.00022026	-1.9221	-0.0010145	527.8160561223148	62.597	0.80382	62.358	62.144	62.947	-0.23926					43	22	2	0	0	0	0.31037	1	7268	7268		74.255	2.3776	1	3869900	+		41367	24807	28544	28597	46760	46760					0.09358004885712035
LKAKIDIL	8	Unmodified	_LKAKIDIL_					0	0	0		nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.28924560546875	2	457.307678	912.600803	-0.27969	-0.0001279	-4.0433	-0.001849	-4.323	-0.001977	457.307364848487	93.748	0.36662	93.744	93.581	93.947	-0.0042038					17	8	3	0	0	0	0.027866	1	11871	11871		31.955	6.5047	1	140820			41368	18216	28545	28598	46761	46761					0.1410070935071417
LKAKVDIPK	9	Unmodified	_LKAKVDIPK_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7564392089844	2	506.331685	1010.64882	-0.67724	-0.00034291	0.23608	0.00011953	-0.44117	-0.00022338	506.3318545340014	34.685	0.39235	34.735	34.518	34.91	0.050251					15	9	2	0	0	0	0.024477	1	2544	2544		20.947	7.9877	1	126740	+		41369	23359	28546	28599	46762	46762					0.14391783270741598
LKAKVDIPK	9	Unmodified	_LKAKVDIPK_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.331685	1010.64882	-0.68043	-0.00034452	0.223	0.00011291	-0.45743	-0.00023161	506.331700064136	34.673	0.44016	34.489	34.244	34.685	-0.18309	-0.11577	6.3422E-05	NaN	27.882	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103180	+		41370	23359	28546	28599							0.14391783270741598
LKALCSILN	9	Unmodified	_LKALCSILN_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7906494140625	2	487.788795	973.563038	0.29152	0.0001422	3.4181	0.0016673	3.7097	0.0018095	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.77768	1	10403	10403		40.778	6.6056	1	2091900			41371	3152	28547	28600	46763	46763					0.07519875093601058
LKALETSVD	9	Unmodified	_LKALETSVD_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.28192138671875	2	488.27149	974.528426	-0.2279	-0.00011128	0.29138	0.00014227	0.063481	3.0996E-05	488.2715055820107	65.682	0.5777	65.431	65.148	65.726	-0.25112					36	13	3	0	0	0	0.024506	1	7487	7487		23.042	0	1	639740			41372	5178	28548	28601	46764	46764					0.04014330486484141
LKALGVNAM	9	Unmodified	_LKALGVNAM_					0	0	0		ENSG00000166426|ENST00000299529|CRABP1	ENSG00000166426|ENST00000299529|CRABP1	ENSG00000166426|ENST00000299529|CRABP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.7457580566406	2	458.767863	915.521173	0.44984	0.00020637	3.6618	0.0016799	4.1116	0.0018863	458.7692572011456	25.961	0.36435	26.041	25.966	26.33	0.08009					12	8	2	0	0	0	0.024262	1	1266	1266		38.806	5.3132	1	137420			41373	7555	28549	28602	46765	46765					0.06003319405056118
LKALLLEAQ	9	Unmodified	_LKALLLEAQ_					0	0	0		ENSG00000164051|ENST00000395694|CCDC51;nc|ENSG00000164051|Q96ER9-2|CCDC51	ENSG00000164051|ENST00000395694|CCDC51	ENSG00000164051|ENST00000395694|CCDC51	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.76348876953125	2	499.815867	997.617182	0.41976	0.0002098	-2.2961	-0.0011476	-1.8764	-0.00093783	499.81519522654565	99.705	0.46883	99.699	99.388	99.857	-0.0050812					16	10	2	0	0	0	0.024447	1	12658	12658		32.812	0	1	84370			41374	7198	28550	28603	46766	46766					0.11827790516804271
LKALQSGT	8	Unmodified	_LKALQSGT_					0	0	0		ENST00000519726.2_1_8:8025406-8025547:-|nuORF;ENST00000468859.1_1_3:125581808-125604769:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.5390930175781	2	409.242535	816.470518	-0.38555	-0.00015778	0.26419	0.00010812	-0.12136	-4.9666E-05	409.2425105363396	30.315	0.67398	30.137	29.866	30.54	-0.17818					31	15	3	0	0	0	0.027866	1	1969	1969		0.90815	0	1	270030			41375	14887	28551	28604	46767	46767					0.05494113351721808
LKALQSGT	8	Unmodified	_LKALQSGT_					0	0	0		ENST00000519726.2_1_8:8025406-8025547:-|nuORF;ENST00000468859.1_1_3:125581808-125604769:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	409.242535	816.470518	-0.16956	-6.9393E-05	0.35006	0.00014326	0.1805	7.3867E-05	409.2425573885614	30.411	0.76228	30.167	29.82	30.582	-0.24415	0.026045	9.4929E-05	NaN	0.90815	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251510			41376	14887	28551	28604							0.05494113351721808
LKALQSGT	8	Unmodified	_LKALQSGT_					0	0	0		ENST00000519726.2_1_8:8025406-8025547:-|nuORF;ENST00000468859.1_1_3:125581808-125604769:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	409.242535	816.470518	-0.11151	-4.5634E-05	0.14183	5.8044E-05	0.030326	1.2411E-05	409.2424561119601	30.269	0.63727	30.12	29.792	30.429	-0.14952	-0.021594	-7.5501E-05	NaN	0.90815	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268500			41377	14887	28551	28604							0.05494113351721808
LKALVIEPN	9	Unmodified	_LKALVIEPN_					0	0	0			REV__ENST00000510543.1_1_4:63682918-63683389:+|nuORF	REV__ENST00000510543.1_1_4:63682918-63683389:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2552490234375	2	498.808042	995.601532	0.12827	6.3984E-05	-0.3077	-0.00015348	-0.17943	-8.9501E-05	498.80782804404555	71.83	0.75774	71.554	71.314	72.071	-0.2751					24	18	2	0	0	0	0.024427	1	8398	8398		19.997	0	1	171550	+		41378	34105	28552	28605	46768	46768					0.10355503999744542
LKALVPPRAY	10	Unmodified	_LKALVPPRAY_					0	0	0			REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.805419921875	2	564.350409	1126.68626	-0.74277	-0.00041918	-3.6049	-0.0020344	-4.3477	-0.0024536	564.3482090404993	56.778	1.1193	56.614	56.313	57.432	-0.16431					74	30	4	0	0	0	0.03519	1	6277	6277		32.812	6.1195	1	1822100	+		41379	19961	28553	28606	46769	46769					0.12798874536360927
LKALWIIL	8	Unmodified	_LKALWIIL_					0	0	0		ENST00000251636.9_1_5:54566241-54566439:-|nuORF	ENST00000251636.9_1_5:54566241-54566439:-|nuORF	ENST00000251636.9_1_5:54566241-54566439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.28839111328125	2	485.328414	968.642274	0.22848	0.00011089	1.2241	0.00059409	1.4526	0.00070498	485.3294415424324	18.016	0.19554	17.884	17.811	18.006	-0.13147					5	3	2	0	0	0	0.027866	1	241	241		14.664	0	1	13055			41380	11355	28554	28607	46770	46770					0.1566989011004125
LKALYIAEYE	10	Unmodified	_LKALYIAEYE_					0	0	0			REV__ENSG00000198252|ENST00000354586|STYX	REV__ENSG00000198252|ENST00000354586|STYX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.923095703125	3	404.88854	1211.64379	-0.23177	-9.384E-05	3.7665	0.001525	3.5347	0.0014312	404.8910290163353	26.524	0.29365	26.288	26.162	26.456	-0.23603					11	7	2	0	0	0	0.03519	1	1385	1385		31.634	0	1	80301	+		41381	28405	28555	28608	46771	46771					0.04643434617491948
LKALYWPL	8	Unmodified	_LKALYWPL_					0	0	0			REV__ENST00000367051.5_1_1:207812769-207813015:+|nuORF	REV__ENST00000367051.5_1_1:207812769-207813015:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30413818359375	2	502.302396	1002.59024	-0.49298	-0.00024762	-1.8272	-0.00091782	-2.3202	-0.0011654	502.3012398373382	25.3	0.38922	25.073	24.842	25.231	-0.22683					13	8	2	0	0	0	0.027866	1	1165	1165		21.702	6.0605	1	63752	+		41382	31000	28556	28609	46772	46772					0.08904726696277976
LKALYWPL	8	Unmodified	_LKALYWPL_					0	0	0			REV__ENST00000367051.5_1_1:207812769-207813015:+|nuORF	REV__ENST00000367051.5_1_1:207812769-207813015:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.302396	1002.59024	0.69857	0.0003509	-2.1089	-0.0010593	-1.4103	-0.00070839	502.3012408021279	25.069	0.34118	24.897	24.777	25.118	-0.17151	-0.087875	-6.1387E-05	NaN	21.702	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67523	+		41383	31000	28556	28609							0.08904726696277976
LKANLSFTK	9	Unmodified	_LKANLSFTK_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.84393310546875	2	511.305667	1020.59678	-0.28713	-0.00014681	-0.7938	-0.00040588	-1.0809	-0.00055269	511.30527091392344	76.256	0.31246	75.988	75.817	76.129	-0.26806					11	7	2	0	0	0	0.024457	1	9019	9019		29.15	4.6304	1	138580			41384	4619	28557	28610	46773	46773					0.08730619857010424
LKAPEKSLS	9	Unmodified	_LKAPEKSLS_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.790771484375	2	486.78985	971.565146	-0.97284	-0.00047357	2.375	0.0011561	1.4022	0.00068256	486.79080649089747	37.597	0.71998	37.378	37.114	37.834	-0.2195					61	18	5	0	0	0	0.56934	1	3030	3030		54.776	4.7518	1	2567000	+		41385	26603	28558	28611	46774	46774					0.07822627103041668
LKAPGVLQPE	10	Unmodified	_LKAPGVLQPE_					0	0	0		ENST00000409331.6_1_2:85582684-85584214:+|nuORF	ENST00000409331.6_1_2:85582684-85584214:+|nuORF	ENST00000409331.6_1_2:85582684-85584214:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3214111328125	2	526.310949	1050.60735	1.2888	0.00067831	-1.2563	-0.0006612	0.032516	1.7114E-05	526.3100679909037	19.632	0.29668	19.399	19.275	19.572	-0.23345					7	5	2	0	0	0	0.03519	1	433	433		24.519	6.2571	1	30863			41386	13773	28559	28612	46775	46775					0.08406602511445271
LKAPQSIQP	9	Unmodified	_LKAPQSIQP_					0	0	0			REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2900390625	2	491.290017	980.565481	-0.57676	-0.00028336	-0.15815	-7.7699E-05	-0.73491	-0.00036106	491.2898870922152	44.742	1.4595	44.742	44.12	45.58	0					74	42	3	0	0	0	0.077175	2	4331	4287;4331		118.74	38.804	1	6480900	+		41387	21446	28560	28613	46776;46777	46777					0.07442046822893644
LKAPQSIQP	9	Unmodified	_LKAPQSIQP_					0	0	0			REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2899475097656	2	491.290017	980.565481	-0.94428	-0.00046391	0.26844	0.00013188	-0.67584	-0.00033203	491.29010854393937	44.916	1.2926	44.768	44.222	45.515	-0.1488					64	37	3	0	0	0	0.057894	1	4305	4305		125.81	32.671	1	6835500	+		41388	21446	28560	28613	46778	46778					0.07442046822893644
LKAPQSIQP	9	Unmodified	_LKAPQSIQP_					0	0	0			REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	REV__ENST00000522665.5_1_8:134254200-134261004:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.29010009765625	2	491.290017	980.565481	-0.41902	-0.00020586	-0.22992	-0.00011296	-0.64894	-0.00031882	491.28983347070357	44.772	1.5008	44.809	44.072	45.573	0.0369					77	43	4	0	0	0	0.033448	1	4236	4236		138.83	28.706	1	6291400	+		41389	21446	28560	28613	46779	46779					0.07442046822893644
LKAQVTISI	9	Unmodified	_LKAQVTISI_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2909851074219	2	486.808042	971.601532	0.45999	0.00022393	3.3145	0.0016135	3.7744	0.0018374	486.81001402577994	102.36	0.22847	102.19	102.01	102.24	-0.17178					9	5	2	0	0	0	0.024466	1	12705	12705		24.519	6.1948	1	30060			41390	7399	28561	28614	46780	46780					0.11459503999765275
LKAQVTISI	9	Unmodified	_LKAQVTISI_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.808042	971.601532	-0.45996	-0.00022391	4.218	0.0020533	3.758	0.0018294	486.8102388993603	102.41	0.44253	102.41	102.17	102.61	0	0.063675	-2.8313E-05	NaN	24.519	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56679			41391	7399	28561	28614							0.11459503999765275
LKAQVTISI	9	Unmodified	_LKAQVTISI_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.808042	971.601532	-0.21585	-0.00010508	4.5154	0.0021981	4.2995	0.002093	486.8102656297899	102.44	0.4408	102.44	102.19	102.63	-0.0054474	0.092202	0.00026124	NaN	24.519	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72916			41392	7399	28561	28614							0.11459503999765275
LKASMKVSL	9	Unmodified	_LKASMKVSL_					0	0	0			REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2825012207031	2	488.79662	975.578688	-0.133	-6.5012E-05	0.82355	0.00040255	0.69055	0.00033754	488.79693660964193	55.634	0.22391	55.478	55.293	55.517	-0.15601					8	5	2	0	0	0	0.024313	1	6104	6104		35.152	8.4591	1	72672	+		41393	35604	28562	28615	46781	46781					0.08992161610649418
LKATWLLI	8	Unmodified	_LKATWLLI_					0	0	0			REV__ENST00000372518.4_1_20:44519787-44519817:-|nuORF	REV__ENST00000372518.4_1_20:44519787-44519817:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.30615234375	2	479.310221	956.605889	0.4978	0.0002386	-4.4553	-0.0021355	-3.9575	-0.0018969	479.30782594177003	20.686	0.78246	20.519	20.049	20.832	-0.16774					39	15	4	0	0	0	0.91239	1	571	571		50.025	2.1089	1	495990	+		41394	31207	28563	28616	46782	46782					0.12585013213345064
LKAVSSEKI	9	Unmodified	_LKAVSSEKI_					0	0	0			REV__AGPS-MOB4|1|fusion	REV__AGPS-MOB4|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2709045410156	2	487.797675	973.580796	0.090139	4.397E-05	-0.51305	-0.00025026	-0.42291	-0.00020629	487.7973111504357	23.088	0.46811	22.886	22.593	23.061	-0.20193					18	9	3	0	0	0	0.024292	1	866	866		32.812	0	1	74820	+		41395	19087	28564	28617	46783	46783					0.09294913620101397
LKAVVASWLV	10	Unmodified	_LKAVVASWLV_					0	0	0		ENST00000442773.1_1_21:40752424-40752547:+|nuORF	ENST00000442773.1_1_21:40752424-40752547:+|nuORF	ENST00000442773.1_1_21:40752424-40752547:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.318603515625	2	543.33951	1084.66447	-0.63855	-0.00034695	-3.5001	-0.0019017	-4.1386	-0.0022487	543.3372560823512	50.26	0.8334	50.108	49.854	50.687	-0.1512					42	24	2	0	0	0	0.03519	1	5212	5212		45.972	6.7194	1	247450			41396	14387	28565	28618	46784	46784					0.12552069787784603
LKAYYKEF	8	Unmodified	_LKAYYKEF_					0	0	0			REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7716674804688	2	531.286943	1060.55933	0.025919	1.377E-05	-2.4584	-0.0013061	-2.4325	-0.0012923	531.287356162772	24.574	0.27551	24.652	24.547	24.823	0.078344					9	5	3	0	0	0	0.027866	1	1028	1028		53.351	17.733	1	20208	+		41397	21345	28566	28619	46785	46785					0.031475285913757034
LKCAGNEDIV	10	Unmodified	_LKCAGNEDIV_					0	0	0		ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENST00000397222.2_1_X:45918520-45918886:-|nuORF	ENST00000397222.2_1_X:45918520-45918886:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2850341796875	2	531.268424	1060.5223	0.22722	0.00012071	-1.2749	-0.00067729	-1.0476	-0.00055658	531.2681046759179	70.729	0.54308	70.729	70.483	71.026	0					18	12	3	0	0	0	0.03519	1	8519	8519		44.377	0	1	65693			41398	13587	28567	28620	46786	46786					-0.005545110167076928
LKCAHILK	8	Carbamidomethyl (C)	_LKC(Carbamidomethyl (C))AHILK_	LKC(1)AHILK		LKC(41)AHILK		0	1	0		ENST00000599145.1_1_19:58927211-58927334:+|nuORF	ENST00000599145.1_1_19:58927211-58927334:+|nuORF	ENST00000599145.1_1_19:58927211-58927334:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7964172363281	2	491.796955	981.579357	-0.8897	-0.00043755	-1.34	-0.00065903	-2.2297	-0.0010966	491.79612149361634	47.571	1.5221	47.63	46.587	48.109	0.059097					127	43	4	0	0	0	0.97924	1	4748	4748		40.573	15.122	1	6614300			41399	17487	28568	28621	46787	46787	234				0.08783001050358052
LKCCKRNT	8	Unmodified	_LKCCKRNT_					0	0	0		ENSG00000147246|ENST00000276198|HTR2C	ENSG00000147246|ENST00000276198|HTR2C	ENSG00000147246|ENST00000276198|HTR2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6463928222656	2	483.254597	964.494641	0.128	6.1854E-05	2.0856	0.0010079	2.2136	0.0010697	483.2551080278017	47.199	0.34419	47.103	46.934	47.278	-0.096649					15	8	2	0	0	0	0.027866	1	4579	4579		24.203	0	1	295260			41400	5950	28569	28622	46788	46788					0.010973072420597418
LKCGFWIL	8	Unmodified	_LKCGFWIL_					0	0	0			REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7613830566406	2	490.275324	978.536095	0.29585	0.00014505	2.4829	0.0012173	2.7788	0.0013624	490.27605540488366	87.192	0.59206	87.192	86.899	87.491	0					20	13	2	0	0	0	0.027866	1	10926	10926		26.796	13.837	1	121010	+		41401	21117	28570	28623	46789	46789					0.04596811273063395
LKCIHLKQ	8	Unmodified	_LKCIHLKQ_					0	0	0			REV__ENST00000498453.1_1_5:130325619-130325778:+|nuORF	REV__ENST00000498453.1_1_5:130325619-130325778:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7252502441406	2	491.796955	981.579357	0.47055	0.00023141	-2.3289	-0.0011453	-1.8583	-0.00091391	491.79565551026997	71.964	2.2525	71.964	71.185	73.438	0					79	57	2	0	0	0	0.027866	1	8728	8728		14.865	0	1	178690	+		41402	33881	28571	28624	46790	46790					0.08783001050346684
LKCIVRKK	8	Unmodified	_LKCIVRKK_					0	0	0			REV__ENST00000590306.5_1_19:9544810-9545835:-|nuORF	REV__ENST00000590306.5_1_19:9544810-9545835:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.30108642578125	2	494.328422	986.642291	0.53987	0.00026687	2.2481	0.0011113	2.7879	0.0013782	494.32768927720264	96	0.36792	96.007	95.818	96.186	0.0065079					12	8	2	0	0	0	0.027866	1	12183	12183		25.45	13.243	1	104970	+		41403	35698	28572	28625	46791	46791					0.14843566838385414
LKCLACIL	8	Unmodified	_LKCLACIL_					0	0	0			REV__nc|ENSG00000101871|O15344-2|MID1;REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.263671875	2	438.75591	875.497266	-0.26851	-0.00011781	1.1805	0.00051795	0.91199	0.00040014	438.75640557938567	41.304	0.58642	41.073	40.848	41.434	-0.23029					33	14	3	0	0	0	0.027866	1	3606	3606		42.474	0	1	768090	+		41404	20656;21261	28573	28626	46792	46792					0.054537626470278155
LKCNHCEIT	9	Unmodified	_LKCNHCEIT_					0	0	0			REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.294677734375	2	530.749344	1059.48414	-1.301	-0.0006905	-1.6232	-0.00086152	-2.9242	-0.001552	530.7478981796588	65.905	0.24684	65.692	65.547	65.794	-0.21327					8	5	2	0	0	0	0.024506	1	7534	7534		30.504	1.3541	1	285680	+		41405	37185	28574	28627	46793	46793					-0.043227202030038825
LKCSGMIVTH	10	Carbamidomethyl (C),Oxidation (M)	_LKC(Carbamidomethyl (C))SGM(Oxidation (M))IVTH_	LKC(1)SGMIVTH	LKCSGM(1)IVTH	LKC(48)SGMIVTH	LKCSGM(48)IVTH	0	1	1		ENST00000360150.8_1_12:29491470-29491608:-|nuORF	ENST00000360150.8_1_12:29491470-29491608:-|nuORF	ENST00000360150.8_1_12:29491470-29491608:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	581.2941284179688	2	581.291376	1160.5682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.364	1	99.36	98.86	99.86	-0.0038834								0	0	0	0.75873	1	12625	12625		47.657	6.2307	1				41406	12756	28575	28628	46794	46794	171	477			-0.005661891060981361
LKCVLFLL	8	Unmodified	_LKCVLFLL_					0	0	0			REV__ENST00000396821.7_1_22:38879500-38879563:-|nuORF	REV__ENST00000396821.7_1_22:38879500-38879563:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.7561950683594	2	474.801174	947.587796	1.0299	0.00048901	2.3489	0.0011153	3.3788	0.0016043	474.802361908674	22.925	0.37078	22.734	22.572	22.942	-0.19117					10	7	2	0	0	0	0.027866	1	852	852		20.482	0	1	31306	+		41407	31748	28576	28629	46795	46795					0.11190554966947275
LKCVLFLL	8	Unmodified	_LKCVLFLL_					0	0	0			REV__ENST00000396821.7_1_22:38879500-38879563:-|nuORF	REV__ENST00000396821.7_1_22:38879500-38879563:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.801174	947.587796	0.57905	0.00027494	3.8045	0.0018064	4.3835	0.0020813	474.8024557512014	22.866	0.32717	22.677	22.512	22.839	-0.18894	-0.031778	0.00031136	NaN	20.482	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27273	+		41408	31748	28576	28629							0.11190554966947275
LKCVLFLL	8	Unmodified	_LKCVLFLL_					0	0	0			REV__ENST00000396821.7_1_22:38879500-38879563:-|nuORF	REV__ENST00000396821.7_1_22:38879500-38879563:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	474.801174	947.587796	-0.4224	-0.00020055	3.9057	0.0018544	3.4833	0.0016539	474.80305893719014	22.9	0.32332	22.715	22.554	22.877	-0.18539	0.0060934	0.00040744	NaN	20.482	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34946	+		41409	31748	28576	28629							0.11190554966947275
LKDAEQLML	9	Unmodified	_LKDAEQLML_					0	0	0			REV__ENSG00000120756|ENST00000457734|PLS1	REV__ENSG00000120756|ENST00000457734|PLS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8139038085938	2	530.788992	1059.56343	-0.082838	-4.3969E-05	-0.53542	-0.00028419	-0.61825	-0.00032816	530.7885937962061	77.572	0.59416	77.31	77.141	77.735	-0.26202					18	13	2	0	0	0	0.024447	1	9279	9279		32.812	0	1	78982	+		41410	22559	28577	28630	46796	46796					0.03603250022774773
LKDARNKLT	9	Unmodified	_LKDARNKLT_					0	0	0		CON__Q922U2	CON__Q922U2	CON__Q922U2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2972412109375	2	529.819473	1057.62439	-0.28162	-0.00014921	2.7162	0.0014391	2.4346	0.0012899	529.8206801011632	52.251	0.55997	52.104	51.846	52.406	-0.14735					34	14	3	0	0	0	0.023007	1	5542	5542		39.253	4.1008	1	612180		+	41411	569	28578	28631	46797	46797					0.09788523117231307
LKDCSINPK	9	Unmodified	_LKDCSINPK_					0	0	0		nc|ENSG00000070614|P52848-2|NDST1;nc|ENSG00000070614|P52848-3|NDST1;ENSG00000070614|ENST00000261797|NDST1	nc|ENSG00000070614|P52848-2|NDST1	nc|ENSG00000070614|P52848-2|NDST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.8031921386719	2	509.273509	1016.53247	0.04407	2.2444E-05	-4.2324	-0.0021554	-4.1883	-0.002133	509.2715983636472	36.954	0.92769	36.891	36.628	37.556	-0.063389					36	24	3	0	0	0	0.019436	1	2948	2948		107.01	16.231	1	273360			41412	1430	28579	28632	46798	46798					0.024860967085373886
LKDDKLRTE	9	Unmodified	_LKDDKLRTE_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.3323364257812	2	559.31422	1116.61389	0.38784	0.00021693	-3.8276	-0.0021408	-3.4397	-0.0019239	559.811709707329	58.795	0.87877	58.553	58.422	59.301	-0.24165					35	21	3	0	0	0	0.024527	1	6552	6552		24.519	0.99649	1	159650			41413	164	28580	28633	46799	46799					0.06024495672136254
LKDDKLRTE	9	Unmodified	_LKDDKLRTE_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	559.31422	1116.61389	-0.18739	-0.00010481	-0.99978	-0.00055919	-1.1872	-0.000664	559.8151877545373	58.63	0.40746	58.443	58.24	58.648	-0.18705	-0.05534	0.00076727	NaN	29.17	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249200			41414	164	28580	28633							0.06024495672136254
LKDEDRIF	8	Unmodified	_LKDEDRIF_					0	0	0		ENST00000534139.5_1_11:67374453-67375950:+|nuORF;ENST00000530638.1_1_11:67374453-67376046:+|nuORF;ENST00000525086.5_1_11:67374475-67376939:+|nuORF;ENST00000524838.5_1_11:67374453-67377304:+|nuORF;nc|ENSG00000167792|P49821-2|NDUFV1;ENSG00000167792|ENST00000322776|NDUFV1	ENST00000534139.5_1_11:67374453-67375950:+|nuORF	ENST00000534139.5_1_11:67374453-67375950:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.704833984375	2	518.277106	1034.53966	-0.11643	-6.0341E-05	-1.5594	-0.00080821	-1.6758	-0.00086855	518.2765895472997	34.015	0.53288	33.808	33.587	34.12	-0.20696					17	13	2	0	0	0	0.027866	1	2515	2515		60.972	6.1956	1	397590			41415	7739	28581	28634	46800	46800					0.023771525806068894
LKDELSHFEQS	11	Unmodified	_LKDELSHFEQS_					0	0	0			REV__CON__P31096	REV__CON__P31096	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.6357116699219	3	444.885858	1331.63574	-0.47907	-0.00021313	-2.3969	-0.0010664	-2.876	-0.0012795	444.88386785909796	40.588	0.1356	40.611	40.527	40.663	0.023006					5	3	2	0	0	0	0.024723	1	3523	3523		19.627	0	1	46564	+	+	41416	19559	28582	28635	46801	46801					-0.016807443699462965
LKDESVTQ	8	Unmodified	_LKDESVTQ_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.22723388671875	2	460.24019	918.465826	-0.27855	-0.0001282	1.1142	0.00051281	0.83566	0.00038461	460.2403942600777	27.391	0.54534	27.391	27.144	27.689	0					33	14	3	0	0	0	0.027866	1	1478	1478		15.642	0	1	435280	+		41417	25024	28583	28636	46802	46802					0.0033318441828669165
LKDESVTQ	8	Unmodified	_LKDESVTQ_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.24019	918.465826	-0.6007	-0.00027646	0.91869	0.00042282	0.31799	0.00014635	460.2404590421321	27	0.51614	27.081	26.841	27.357	0.081293	-0.18426	8.8443E-06	NaN	15.642	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	792230	+		41418	25024	28583	28636							0.0033318441828669165
LKDEVLEVL	9	Unmodified	_LKDEVLEVL_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.739501953125	2	529.310615	1056.60668	-0.19921	-0.00010544	-3.8925	-0.0020603	-4.0917	-0.0021658	530.3101956246488	21.365	0.48936	21.175	20.882	21.372	-0.19072					20	9	3	0	0	0	0.024436	1	637	637		30.504	2.6214	1	49195			41419	8709	28584	28637	46803	46803					0.08063763071731955
LKDEVLEVL	9	Unmodified	_LKDEVLEVL_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.310615	1056.60668	0.080296	4.2501E-05	-4.8544	-0.0025695	-4.7741	-0.002527	529.8096095659167	21.218	0.62441	21.04	20.678	21.303	-0.17721	-0.062415	-0.0021489	NaN	23.042	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51737			41420	8709	28584	28637							0.08063763071731955
LKDFNVGGYI	10	Unmodified	_LKDFNVGGYI_					0	0	0		PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2704467773438	2	563.300581	1124.58661	-0.086951	-4.8979E-05	-0.75776	-0.00042684	-0.84471	-0.00047582	563.299971631459	63.961	0.91461	63.703	63.39	64.304	-0.25824					49	23	3	0	0	0	0.03519	1	7285	7285		76.774	2.5191	1	1584500			41421	1394	28585	28638	46804	46804					0.0293001213176467
LKDGFNVE	8	Unmodified	_LKDGFNVE_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.28399658203125	2	461.23745	920.460347	-1.1249	-0.00051883	2.1144	0.00097526	0.98959	0.00045643	461.23833905908896	65.182	1.0403	64.919	64.267	65.307	-0.2626					40	27	3	0	0	0	0.027866	1	7713	7713		29.15	0	1	200410	+		41422	24852	28586	28639	46805	46805					-0.003064943735239467
LKDGVVTVE	9	Unmodified	_LKDGVVTVE_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.29022216796875	2	480.274032	958.533512	0.18164	8.7236E-05	0.91532	0.00043961	1.097	0.00052684	480.2744634952198	48.778	0.59019	48.778	48.482	49.072	0					24	16	2	0	0	0	0.024447	1	5005	5005		25.574	10.91	1	723490	+		41423	21246	28587	28640	46806	46806					0.05258634349092972
LKDGVVTVE	9	Unmodified	_LKDGVVTVE_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28961181640625	2	480.274032	958.533512	-0.63483	-0.00030489	1.5099	0.00072515	0.87504	0.00042026	480.27468604032146	48.671	0.59811	48.738	48.417	49.015	0.066795					22	16	2	0	0	0	0.024319	1	4908	4908		31.53	10.583	1	696730	+		41424	21246	28587	28640	46807	46807					0.05258634349092972
LKDGVVTVE	9	Unmodified	_LKDGVVTVE_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.274032	958.533512	-0.48745	-0.00023411	1.216	0.00058403	0.72859	0.00034992	480.2744750337923	48.809	0.7123	48.708	48.434	49.147	-0.1008	-0.062585	0.000158	NaN	24.519	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1381100	+		41425	21246	28587	28640							0.05258634349092972
LKDGVVTVE	9	Unmodified	_LKDGVVTVE_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.274032	958.533512	-0.5423	-0.00026045	1.1899	0.00057148	0.64761	0.00031103	480.2744887541436	49.13	0.74203	48.85	48.538	49.28	-0.27977	0.079846	0.0001329	NaN	24.519	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1413100	+		41426	21246	28587	28640							0.05258634349092972
LKDGVVTVE	9	Unmodified	_LKDGVVTVE_					0	0	0			REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	REV__MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.274032	958.533512	-0.037407	-1.7965E-05	0.69744	0.00033496	0.66004	0.000317	480.27425408687105	48.948	0.78255	48.766	48.446	49.228	-0.18206	-0.0043927	-0.00034013	NaN	24.519	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1424600	+		41427	21246	28587	28640							0.05258634349092972
LKDLEQLAK	9	Unmodified	_LKDLEQLAK_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2970581054688	2	529.316232	1056.61791	-0.5743	-0.00030399	0.23537	0.00012458	-0.33893	-0.0001794	529.3161789292484	55.982	0.49463	55.982	55.679	56.174	0					19	13	2	0	0	0	0.023655	1	6244	6244		69.628	5.4204	1	143110			41428	8414	28588	28641	46808	46808					0.09186585165844008
LKDLEQLAK	9	Unmodified	_LKDLEQLAK_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	529.316232	1056.61791	-0.81585	-0.00043184	0.80474	0.00042596	-0.011116	-5.8837E-06	529.3166628237458	55.831	0.98724	55.929	55.523	56.51	0.097893					31	26	2	0	0	0	0.023061	1	6138	6138		79.713	10.085	1	136950			41429	8414	28588	28641	46809	46809					0.09186585165844008
LKDLKSIID	9	Unmodified	_LKDLKSIID_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7509765625	2	522.818607	1043.62266	-0.1875	-9.803E-05	1.6875	0.00088228	1.5	0.00078425	523.3233426479269	39.87	0.472	39.645	39.38	39.852	-0.225					31	11	4	0	0	0	0.024541	1	3383	3383		9.1829	0	1	80261	+		41430	20273	28589	28642	46810	46810					0.10259469308630287
LKDLLKAM	8	Unmodified	_LKDLLKAM_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2533264160156	2	466.285889	930.557224	-0.64319	-0.00029991	-2.5871	-0.0012063	-3.2303	-0.0015062	466.2843990426823	26.644	0.15111	26.408	26.305	26.456	-0.23603					5	3	2	0	0	0	0.027866	1	1398	1398		24.203	0	1	63061	+		41431	19690	28590	28643	46811	46811					0.08916776581918384
LKDLLPSP	8	Unmodified	_LKDLLPSP_					0	0	0		ENST00000391965.6_1_19:44103467-44103539:+|nuORF	ENST00000391965.6_1_19:44103467-44103539:+|nuORF	ENST00000391965.6_1_19:44103467-44103539:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7678527832031	2	441.768386	881.522219	0.37011	0.0001635	-1.3269	-0.00058618	-0.95679	-0.00042268	441.76786199204633	102.85	1.6021	102.85	102.5	104.11	-0.0046005					103	38	6	0	0	0	0.97924	1	13166	13166		40.573	1.7665	1	25278000			41432	13399	28591	28644	46812	46812					0.07671857045613706
LKDLNKFW	8	Unmodified	_LKDLNKFW_					0	0	0			REV__nc|ENSG00000104774|O00754-2|MAN2B1	REV__nc|ENSG00000104774|O00754-2|MAN2B1	MSMS	OPSCC_39_ClassI_Rep-3	3	532.2984008789062	2	532.300384	1062.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.034	1	52.126	51.626	52.626	0.091938								0	0	0	0.3462	1	5485	5485		73.975	4.3471	1		+		41433	21462	28592	28645	46813	46813					0.05742637202547485
LKDNSWLKGE	10	Unmodified	_LKDNSWLKGE_					0	0	0		MDH1|p.D216N|1|0.16|ENSG00000014641|chr2:63604843-63604843|G/A|missense_variant	MDH1|p.D216N|1|0.16|ENSG00000014641|chr2:63604843-63604843|G/A|missense_variant	MDH1|p.D216N|1|0.16|ENSG00000014641|chr2:63604843-63604843|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.806396484375	2	595.31422	1188.61389	-1.2925	-0.00076944	3.5423	0.0021088	2.2498	0.0013394	595.3165858403132	66.085	0.56461	65.872	65.629	66.194	-0.21327					21	13	2	0	0	0	0.03519	1	7544	7544		36.447	3.6343	1	197820			41434	17960	28593	28646	46814	46814					0.02712495672130899
LKDPDWLAQL	10	Unmodified	_LKDPDWLAQL_					0	0	0		ENST00000471370.5_1_12:58007928-58008279:+|nuORF;nc|ENSG00000240771|Q86VW2-2|ARHGEF25;ENSG00000240771|ENST00000286494|ARHGEF25;nc|ENSG00000240771|Q86VW2-3|ARHGEF25	ENST00000471370.5_1_12:58007928-58008279:+|nuORF	ENST00000471370.5_1_12:58007928-58008279:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	400.220401	1197.63937	1.0338	0.00041374	-0.56819	-0.0002274	0.46558	0.00018633	400.2195343531637	22.886	0.18704	22.692	22.6	22.787	-0.1947					5	3	2	0	0	0	0.03519	1	854	854		43.651	16.603	1	7167.5			41435	14956	28594	28647	46815	46815					0.04845970194560323
LKDPGAVDL	9	Unmodified	_LKDPGAVDL_					0	0	0		ENSG00000125457|ENST00000325102|MIF4GD;ENST00000580099.1_1_17:73264046-73266216:-|nuORF	ENSG00000125457|ENST00000325102|MIF4GD	ENSG00000125457|ENST00000325102|MIF4GD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7869567871094	2	464.260925	926.507297	1.0055	0.00046683	-0.56829	-0.00026384	0.43724	0.00020299	464.26053281387897	71.058	0.64998	70.765	70.499	71.149	-0.29291					31	15	3	0	0	0	0.022756	1	8596	8596		49.442	0	1	1000500			41436	4107	28595	28648	46816	46816					0.04110365177609765
LKDQIILVE	9	Unmodified	_LKDQIILVE_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.815673828125	2	535.826432	1069.63831	-0.34511	-0.00018492	-1.6485	-0.00088333	-1.9936	-0.0010682	535.8257323846817	76.65	0.32771	76.65	76.431	76.759	0					10	7	2	0	0	0	0.024506	1	9468	9468		30.504	0.18592	1	229290	+		41437	24805	28596	28649	46817	46817					0.10627755825680651
LKDQVIRQT	9	Unmodified	_LKDQVIRQT_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.33154296875	2	550.824755	1099.63496	1.9436	0.0010706	-3.1223	-0.0017198	-1.1787	-0.00064923	551.3251905512737	19.161	0.29603	18.928	18.731	19.027	-0.23345					7	5	2	0	0	0	0.024527	1	343	343		24.519	0	1	16170	+		41438	21540	28597	28650	46818	46818					0.0891250577167284
LKDRSRGQ	8	Unmodified	_LKDRSRGQ_					0	0	0		ENST00000534012.1_1_6:135264967-135265117:-|nuORF	ENST00000534012.1_1_6:135264967-135265117:-|nuORF	ENST00000534012.1_1_6:135264967-135265117:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8970947265625	2	480.27269	958.530826	-0.12928	-6.2091E-05	4.1103	0.001974	3.981	0.001912	480.2745365254093	32.127	0.38483	31.969	31.737	32.121	-0.15772					16	8	2	0	0	0	0.027866	1	2178	2178		29.15	7.4472	1	288400			41439	16324	28598	28651	46819	46819					0.0499022373481921
LKDRSRGQ	8	Unmodified	_LKDRSRGQ_					0	0	0		ENST00000534012.1_1_6:135264967-135265117:-|nuORF	ENST00000534012.1_1_6:135264967-135265117:-|nuORF	ENST00000534012.1_1_6:135264967-135265117:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.27269	958.530826	0.47279	0.00022707	4.1746	0.002005	4.6474	0.002232	480.2742041974616	32.162	0.38924	31.926	31.697	32.086	-0.23667	-0.041475	2.8588E-06	NaN	29.15	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161260			41440	16324	28598	28651							0.0499022373481921
LKDRSRGQ	8	Unmodified	_LKDRSRGQ_					0	0	0		ENST00000534012.1_1_6:135264967-135265117:-|nuORF	ENST00000534012.1_1_6:135264967-135265117:-|nuORF	ENST00000534012.1_1_6:135264967-135265117:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.27269	958.530826	0.1268	6.0898E-05	4.272	0.0020517	4.3988	0.0021126	480.27461052536916	32.199	0.60846	32.007	31.597	32.205	-0.19261	0.03975	9.6379E-05	NaN	29.15	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201850			41441	16324	28598	28651							0.0499022373481921
LKDSKKFF	8	Unmodified	_LKDSKKFF_					0	0	0		ENSG00000132297|ENST00000414222|HHLA1	ENSG00000132297|ENST00000414222|HHLA1	ENSG00000132297|ENST00000414222|HHLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7564392089844	2	506.794935	1011.57532	-0.60571	-0.00030697	-2.0688	-0.0010484	-2.6745	-0.0013554	506.7937657174936	34.809	0.55813	34.859	34.64	35.198	0.050255					18	14	2	0	0	0	0.027866	1	2544	2544		19.36	10.538	1	347020			41442	4587	28599	28652	46820	46820					0.06999234828288081
LKDSVTAVVFV	11	Unmodified	_LKDSVTAVVFV_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3;nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000183023|P32418-2|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3428344726562	2	589.344989	1176.67542	-1.1102	-0.00065427	-2.5095	-0.001479	-3.6197	-0.0021332	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	0.97926	1	11459	11459		41.427	2.1738	1	4794700			41443	2238;18576	28601	28653	46821	46821					0.09415427371436635
LKDTLTSRPA	10	Unmodified	_LKDTLTSRPA_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2577514648438	2	551.316763	1100.61897	0.035392	1.9512E-05	-0.55105	-0.0003038	-0.51565	-0.00028429	551.3161330388681	20.754	0.38914	20.586	20.395	20.784	-0.16774					12	7	2	0	0	0	0.03519	1	608	608		20.947	0	1	48181			41444	3442	28602	28654	46822	46822					0.07268799534767822
LKDTLTSRPA	10	Unmodified	_LKDTLTSRPA_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.316763	1100.61897	-1.2879	-0.00071005	1.7285	0.00095295	0.44057	0.00024289	551.3177897083302	20.493	0.57629	20.493	20.225	20.801	0	-0.11025	0.0017136	NaN	20.947	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55460			41445	3442	28602	28654							0.07268799534767822
LKDTLTSRPA	10	Unmodified	_LKDTLTSRPA_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.316763	1100.61897	-0.86773	-0.00047839	1.3318	0.00073427	0.46411	0.00025587	551.3173107268228	20.664	0.52174	20.56	20.375	20.897	-0.10477	-0.043376	0.0012762	NaN	20.947	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50960			41446	3442	28602	28654							0.07268799534767822
LKDTLTSRPA	10	Unmodified	_LKDTLTSRPA_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.316763	1100.61897	0.63551	0.00035037	0.10336	5.6981E-05	0.73887	0.00040735	551.316880804873	20.539	0.63922	20.608	20.415	21.054	0.068901	0.0052778	-7.8382E-05	NaN	20.947	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62907			41447	3442	28602	28654							0.07268799534767822
LKDTLTSRPA	10	Unmodified	_LKDTLTSRPA_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	551.316763	1100.61897	0.51321	0.00028294	-1.033	-0.00056953	-0.51983	-0.00028659	551.315999282533	20.869	0.39378	20.673	20.435	20.828	-0.19577	0.070006	-0.0013314	NaN	20.947	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47756			41448	3442	28602	28654							0.07268799534767822
LKDTLTSRPA	10	Unmodified	_LKDTLTSRPA_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	551.316763	1100.61897	-0.82836	-0.00045669	0.45012	0.00024816	-0.37824	-0.00020853	551.3168450957894	20.911	0.29778	20.698	20.525	20.822	-0.2128	0.095147	0.00030397	NaN	20.947	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58610			41449	3442	28602	28654							0.07268799534767822
LKDVRQII	8	Unmodified	_LKDVRQII_					0	0	0			REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7252502441406	2	492.813659	983.612765	0.64365	0.0003172	3.0029	0.0014799	3.6465	0.0017971	492.81320834674773	71.951	0.77168	71.951	71.642	72.414	0					34	19	3	0	0	0	0.027866	1	8728	8728		58.782	7.4465	1	202030	+		41450	20094	28603	28655	46823	46823					0.12030326093906751
LKDWQILG	8	Unmodified	_LKDWQILG_					0	0	0			REV__ENSG00000143167|ENST00000367868|GPA33	REV__ENSG00000143167|ENST00000367868|GPA33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7772521972656	2	486.779285	971.544017	-0.81719	-0.00039779	0.13479	6.5611E-05	-0.6824	-0.00033218	486.77921022439176	52.527	0.45103	52.258	51.981	52.432	-0.26903					14	11	2	0	0	0	0.027866	1	5459	5459		21.96	0	1	109000	+		41451	24207	28604	28656	46824	46824					0.05710661794205407
LKDYIAYAH	9	Unmodified	_LKDYIAYAH_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3104858398438	2	547.287474	1092.5604	-1.2098	-0.0006621	3.6488	0.001997	2.439	0.0013349	547.7948340855903	62.885	0.20901	62.885	62.729	62.938	0					8	4	3	0	0	0	0.024506	1	7317	7317		23.042	0	1	77471			41452	2593	28605	28657	46825	46825					0.017817429602473567
LKEAELGLPCI	11	Carbamidomethyl (C)	_LKEAELGLPC(Carbamidomethyl (C))I_	LKEAELGLPC(1)I		LKEAELGLPC(57)I		0	1	0		ENST00000520892.5_2_8:141900864-142011029:-|nuORF;ENST00000523797.1_1_8:141935746-142011029:-|nuORF	ENST00000520892.5_2_8:141900864-142011029:-|nuORF	ENST00000520892.5_2_8:141900864-142011029:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.89862060546875	3	414.89693	1241.66896	0.04343	1.8019E-05	3.2737	0.0013582	3.3171	0.0013762	414.8983674042411	25.156	1.4178	25.156	24.786	26.203	0					97	33	6	0	0	0	0.80896	1	1177	1177		57.149	9.9211	1	11629000			41453	15994	28606	28658	46826	46826	216				0.05779166148386139
LKEAELGLPCI	11	Carbamidomethyl (C)	_LKEAELGLPC(Carbamidomethyl (C))I_	LKEAELGLPC(1)I		LKEAELGLPC(55)I		0	1	0		ENST00000520892.5_2_8:141900864-142011029:-|nuORF;ENST00000523797.1_1_8:141935746-142011029:-|nuORF	ENST00000520892.5_2_8:141900864-142011029:-|nuORF	ENST00000520892.5_2_8:141900864-142011029:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.8985595703125	3	414.89693	1241.66896	-0.59712	-0.00024774	3.9897	0.0016553	3.3926	0.0014076	414.89867835631566	25.215	1.3769	25.181	24.815	26.192	-0.034395					96	32	6	0	0	0	0.84303	1	1147	1147		55.084	7.8562	1	11333000			41454	15994	28606	28658	46827	46827	216				0.05779166148386139
LKEAFKDIMI	10	Unmodified	_LKEAFKDIMI_					0	0	0		ENST00000556275.5_1_14:64735521-64746848:-|nuORF	ENST00000556275.5_1_14:64735521-64746848:-|nuORF	ENST00000556275.5_1_14:64735521-64746848:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.1932373046875	3	403.23002	1206.66823	-0.37385	-0.00015075	3.0714	0.0012385	2.6976	0.0010877	403.23112397276145	30.469	0.80558	30.319	29.879	30.684	-0.14952					44	18	4	0	0	0	0.03519	1	1909	1909		22.562	0	1	490170			41455	16704	28607	28659	46828	46828					0.07316371499359775
LKEAGRLTQ	9	Unmodified	_LKEAGRLTQ_					0	0	0		nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2357177734375	2	508.298373	1014.58219	-0.97574	-0.00049597	-0.26556	-0.00013498	-1.2413	-0.00063095	508.2979227974012	31.282	0.67023	31.282	30.879	31.549	0					47	15	4	0	0	0	0.024427	1	2090	2090		9.1829	2.8703	1	192450			41456	6573	28608	28660	46829	46829					0.07548547708859132
LKEDGGCTIWY	11	Unmodified	_LKEDGGCTIWY_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.8705139160156	3	428.869151	1283.58562	0.60692	0.00026029	2.339	0.0010031	2.9459	0.0012634	428.87023194734195	36.907	1.352	36.714	36.335	37.687	-0.193					113	34	4	0	0	0	0.95911	1	2926	2926		45.908	4.4815	1	12673000			41457	1674	28609	28661	46830	46830					-0.04482570299433064
LKEDGGCTIWY	11	Unmodified	_LKEDGGCTIWY_					0	0	0		nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.8705749511719	3	428.869151	1283.58562	-0.014633	-6.2758E-06	2.8731	0.0012322	2.8585	0.0012259	428.87047733430035	36.788	1.6975	36.572	36.205	37.903	-0.21661					123	43	4	0	0	0	0.94699	1	2933	2933		48.602	0.64203	1	11744000			41458	1674	28609	28661	46831	46831					-0.04482570299433064
LKEEHVTTF	9	Unmodified	_LKEEHVTTF_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.2719116210938	2	552.290214	1102.56587	-0.28176	-0.00015562	3.3262	0.001837	3.0444	0.0016814	552.2919492214419	77.298	0.7151	77.312	77.062	77.777	0.013504					31	16	3	0	0	0	0.024511	1	9516	9516		25.574	0	1	683080			41459	1561	28610	28662	46832	46832					0.018694217520987877
LKEELEAL	8	Unmodified	_LKEELEAL_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-4|PATL1	REV__nc|ENSG00000166889|Q86TB9-4|PATL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.76910400390625	2	472.768583	943.522613	0.03294	1.5573E-05	1.1137	0.00052653	1.1467	0.00054211	472.7687053048227	76.179	1.0169	75.951	75.633	76.65	-0.22843					41	25	3	0	0	0	0.845	1	9346	9346		55.504	0	1	1095300	+		41460	26075	28611	28663	46833	46833					0.04859231974819522
LKEEMAKVK	9	Unmodified	_LKEEMAKVK_					0	0	0			REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3128662109375	2	538.312635	1074.61072	0.24458	0.00013166	-3.8369	-0.0020654	-3.5923	-0.0019338	538.3104271435263	63.013	1.4972	63.067	62.557	64.054	0.054104					85	39	4	0	0	0	0.024541	1	7195	7195		19.997	6.2214	1	3588700	+		41461	26091	28612	28664	46834	46834					0.07639529293783198
LKEEMAKVK	9	Unmodified	_LKEEMAKVK_					0	0	0			REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.312635	1074.61072	-1.0427	-0.00056129	-2.752	-0.0014815	-3.7947	-0.0020427	538.3110370811667	63.063	1.2329	63.063	62.612	63.845	0	-0.010278	0.00038348	NaN	14.137	74	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3635000	+		41462	26091	28612	28664							0.07639529293783198
LKEEMAKVK	9	Unmodified	_LKEEMAKVK_					0	0	0			REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.312635	1074.61072	-0.66479	-0.00035786	-2.8618	-0.0015405	-3.5266	-0.0018984	538.310972026565	63.259	1.4601	63.016	62.571	64.031	-0.24358	-0.058045	0.0002653	NaN	14.137	79	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3846500	+		41463	26091	28612	28664							0.07639529293783198
LKEEMAKVK	9	Unmodified	_LKEEMAKVK_					0	0	0			REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.312635	1074.61072	-0.29032	-0.00015628	-3.5415	-0.0019064	-3.8318	-0.0020627	538.3104580560458	63.28	0.68144	63.059	62.691	63.372	-0.22097	-0.015181	-0.00046648	NaN	14.137	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417560	+		41464	26091	28612	28664							0.07639529293783198
LKEEMAKVK	9	Unmodified	_LKEEMAKVK_					0	0	0			REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.312635	1074.61072	-0.55357	-0.00029799	-3.6754	-0.0019785	-4.229	-0.0022765	538.3102965043109	63.288	0.67989	63.104	62.746	63.426	-0.18386	0.030413	-0.00061062	NaN	14.137	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449190	+		41465	26091	28612	28664							0.07639529293783198
LKEEMAKVK	9	Unmodified	_LKEEMAKVK_					0	0	0			REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	REV__MAP1A|p.P2370Qfs*84|1|0.24|ENSG00000166963|chr15:43528577-43528577|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.312635	1074.61072	-0.50646	-0.00027263	-3.1587	-0.0017003	-3.6651	-0.001973	538.3105738456833	63.392	0.63302	63.133	62.792	63.425	-0.25824	0.059737	-5.4304E-05	NaN	14.137	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471940	+		41466	26091	28612	28664							0.07639529293783198
LKEFMCKI	8	Unmodified	_LKEFMCKI_					0	0	0			REV__ENST00000590181.5_1_17:33310024-33316690:+|nuORF	REV__ENST00000590181.5_1_17:33310024-33316690:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3003845214844	2	506.271924	1010.52929	-0.61234	-0.00031001	-0.64197	-0.00032501	-1.2543	-0.00063502	506.7732567118455	32.458	0.11215	32.47	32.376	32.488	0.011799					4	2	2	0	0	0	0.027866	1	2233	2233		82.241	0	1	35374	+		41467	19796	28613	28665	46835	46835					0.02445130330181655
LKEGNHIR	8	Unmodified	_LKEGNHIR_					0	0	0			REV__ZNF525|p.F448Pfs*6|1|0.08|ENSG00000203326|chr19:53381920-53381936|CTTCAGTCAGGAGTTAT/-|frameshift_variant	REV__ZNF525|p.F448Pfs*6|1|0.08|ENSG00000203326|chr19:53381920-53381936|CTTCAGTCAGGAGTTAT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7782287597656	2	483.777608	965.540663	-0.60425	-0.00029232	1.2859	0.00062211	0.68169	0.00032979	483.7783014314685	29.28	0.98277	29.283	29.014	29.997	0.0031376					69	24	4	0	0	0	0.5947	1	1772	1772		76.774	2.5191	1	10605000	+		41468	28534	28614	28666	46836	46836					0.05651411740188905
LKEGQTCTM	9	Carbamidomethyl (C)	_LKEGQTC(Carbamidomethyl (C))TM_	LKEGQTC(1)TM		LKEGQTC(80)TM		0	1	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2468872070312	2	534.246634	1066.47872	-0.64235	-0.00034318	0.38497	0.00020567	-0.25739	-0.00013751	534.2467369123614	34.441	1.4941	34.437	34.152	35.646	-0.0045624					91	38	5	0	0	0	0.26966	1	2547	2547		79.713	7.8351	1	6365600			41469	6479	28615	28667	46837	46837	80				-0.051864437854646894
LKEIHFHLI	9	Unmodified	_LKEIHFHLI_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.3455810546875	2	575.342584	1148.67061	0.72587	0.00041762	4.4757	0.0025751	5.2016	0.0029927	575.345019698839	97.117	1.277	96.993	96.572	97.849	-0.12368					101	28	5	0	0	0	0.94809	1	12027	12027		29.15	2.3535	1	3498400	+		41470	20191;37668	28616	28668	46838	46838					0.10222588019314571
LKEIIEKPILI	11	Unmodified	_LKEIIEKPILI_					0	0	0			REV__ENSG00000122299|ENST00000355758|ZC3H7A	REV__ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.8811340332031	3	436.954885	1307.84282	-0.46864	-0.00020477	-0.89468	-0.00039094	-1.3633	-0.00059571	436.9557136776826	39.798	0.27615	39.821	39.598	39.874	0.023727					12	7	3	0	0	0	0.024702	1	3354	3354		57.149	0	1	76579	+		41471	22636	28617	28669	46839	46839					0.20121694916201704
LKEIKEHAE	9	Unmodified	_LKEIKEHAE_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.291259765625	2	548.803488	1095.59242	-1.0387	-0.00057005	-0.11598	-6.3649E-05	-1.1547	-0.00063369	548.8032049488012	45.885	0.40214	45.683	45.528	45.93	-0.20226					20	10	3	0	0	0	0.024292	1	4357	4357		58.782	0	1	175070	+		41472	36781	28618	28670	46840	46840					0.04845110643418593
LKEILLLGF	9	Unmodified	_LKEILLLGF_					0	0	0		CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	CFAP61|p.R580L|1|0.39|ENSG00000089101|chr20:20196718-20196718|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.286865234375	2	523.336436	1044.65832	-0.14574	-7.627E-05	-2.5487	-0.0013338	-2.6944	-0.0014101	523.335065750942	28.435	0.45309	28.515	28.289	28.742	0.080812					13	10	2	0	0	0	0.024506	1	1576	1576		23.042	11.531	1	177590			41473	258	28619	28671	46841	46841					0.13777551556290746
LKEKESRSL	9	Unmodified	_LKEKESRSL_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.31640625	2	545.316763	1088.61897	-0.35893	-0.00019573	-0.19775	-0.00010784	-0.55668	-0.00030357	545.3165463924156	92.202	1.4758	92.061	91.66	93.136	-0.14131					107	34	4	0	0	0	0.96224	1	11296	11296		28.081	0	1	1496200	+		41474	24796	28620	28672	46842	46842					0.07820799534761136
LKEKGIVVGI	10	Unmodified	_LKEKGIVVGI_					0	0	0		ENSG00000136872|ENST00000647789|ALDOB	ENSG00000136872|ENST00000647789|ALDOB	ENSG00000136872|ENST00000647789|ALDOB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7484741210938	2	528.344792	1054.67503	0.4802	0.00025371	-0.77959	-0.00041189	-0.2994	-0.00015819	528.3443687183177	85.372	0.66983	85.223	84.948	85.618	-0.14967					30	15	3	0	0	0	0.03519	1	10345	10345		42.864	0	1	206500			41475	5060	28621	28673	46843	46843					0.14988052442231492
LKEKINNV	8	Unmodified	_LKEKINNV_					0	0	0			REV__ENSG00000123165|ENST00000371124|ACTRT1	REV__ENSG00000123165|ENST00000371124|ACTRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.29052734375	2	479.290017	956.565481	0.032555	1.5603E-05	-0.053332	-2.5561E-05	-0.020777	-9.9581E-06	479.28979312798833	31.175	0.74192	30.934	30.627	31.369	-0.24109					45	18	4	0	0	0	0.38451	1	2051	2051		99.375	5.3685	1	4129400	+		41476	22682	28622	28674	46844	46844					0.08546046822880271
LKEKLIAPVAE	11	Unmodified	_LKEKLIAPVAE_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000544151.1_1_12:21807353-21810687:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.87158203125	2	605.873914	1209.73327	-0.27427	-0.00016617	-2.7727	-0.0016799	-3.047	-0.0018461	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	1.0521	1	12215	12215		24.519	3.5723	1	990980			41477	3141	28623	28675	46845	46845					0.13679689296827746
LKEKLSTS	8	Unmodified	_LKEKLSTS_					0	0	0		ENSG00000113396|ENST00000262462|SLC27A6;SLC27A6|p.A335Qfs*15|1|0.44|ENSG00000113396|chr5:129015917-129015917|G/-|frameshift_variant;SLC27A6|p.G419Rfs*24|1|0.43|ENSG00000113396|chr5:129023703-129023704|-/A|frameshift_variant	ENSG00000113396|ENST00000262462|SLC27A6	ENSG00000113396|ENST00000262462|SLC27A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.5653991699219	2	453.26875	904.522947	0.50287	0.00022794	1.6947	0.00076817	2.1976	0.0009961	453.2693350418546	19.035	0.44436	18.832	18.609	19.053	-0.20371					11	8	2	0	0	0	0.027866	1	383	383		38.806	1.647	1	27974			41478	3292	28624	28676	46846	46846					0.0668665169465612
LKEKSRPPG	9	Unmodified	_LKEKSRPPG_					0	0	0		nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3006896972656	2	506.300916	1010.58728	-0.61212	-0.00030992	-1.4062	-0.00071197	-2.0183	-0.0010219	506.3006706752486	32.406	1.4396	32.418	32.063	33.503	0.011799					71	38	3	0	0	0	0.11092	1	2247	2247		108.09	12.272	1	11057000			41479	8492	28625	28677	46847	46847					0.0824085157147465
LKEKTAPSLL	10	Unmodified	_LKEKTAPSLL_					0	0	0			REV__ENSG00000115594|ENST00000410023|IL1R1	REV__ENSG00000115594|ENST00000410023|IL1R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2891235351562	2	550.339707	1098.66486	-0.81039	-0.00044599	-0.1591	-8.7557E-05	-0.96949	-0.00053355	550.3395152096246	48.231	0.59217	47.955	47.664	48.257	-0.27598					36	15	3	0	0	0	0.03519	1	4777	4777		18.262	0	1	679480	+		41480	22215	28626	28678	46848	46848					0.1194744471699778
LKELALKIKDA	11	Unmodified	_LKELALKIKDA_					0	0	0			REV__ENSG00000077420|ENST00000376236|APBB1IP	REV__ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	621.393798828125	2	621.395013	1240.77547	0.43285	0.00026897	-4.309	-0.0026776	-3.8761	-0.0024086	621.3920314992529	104.13	0.28841	103.96	103.85	104.14	-0.16791					9	7	2	0	0	0	0.024804	1	12956	12956		10.587	0	1	100450	+		41481	20591	28627	28679	46849	46849					0.16471664705204603
LKELCVLLD	9	Unmodified	_LKELCVLLD_					0	0	0		ENSG00000055813|ENST00000407595|CCDC85A	ENSG00000055813|ENST00000407595|CCDC85A	ENSG00000055813|ENST00000407595|CCDC85A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3032836914062	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.5973	1	10759	10759		52.937	8.8199	1	14072000			41482	1190	28628	28680	46850	46850					0.06840724545213561
LKELLEKHL	9	Unmodified	_LKELLEKHL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.8455200195312	2	561.847699	1121.68084	0.071573	4.0213E-05	-3.5519	-0.0019956	-3.4803	-0.0019554	561.8455167309728	95.387	1.0647	95.391	95.053	96.117	0.0041199					85	24	5	0	0	0	0.67687	1	12073	12073		47.657	13.485	1	1612900	+		41483	26898	28629	28681	46851	46851					0.12487150953893433
LKELLEKHL	9	Unmodified	_LKELLEKHL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.845947265625	2	561.847699	1121.68084	-0.10164	-5.7109E-05	-3.3286	-0.0018702	-3.4303	-0.0019273	561.8456674057395	95.47	0.99585	95.334	94.982	95.978	-0.13689					72	22	5	0	0	0	0.89441	1	11780	11780		32.812	6.1195	1	1624700	+		41484	26898	28629	28681	46852	46852					0.12487150953893433
LKELLEKHL	9	Unmodified	_LKELLEKHL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.8455200195312	2	561.847699	1121.68084	-0.4692	-0.00026362	-3.0701	-0.0017249	-3.5393	-0.0019885	561.8458359900303	95.569	1.081	95.417	95.055	96.136	-0.15186					84	24	5	0	0	0	0.67687	1	11790	11790		47.657	5.2612	1	1438300	+		41485	26898	28629	28681	46853	46853					0.12487150953893433
LKELRIKHGN	10	Unmodified	_LKELRIKHGN_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;DMTF1|p.N330Kfs*8|1|0.11|ENSG00000135164|chr7:87184566-87184567|TT/-|frameshift_variant	nc|ENSG00000135164|Q9Y222-5|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.36669921875	2	604.367121	1206.71969	-1.4686	-0.00088758	0.85378	0.00051599	-0.61484	-0.00037159	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.118	1	13278	13278		20.947	0	1	4767200			41486	4867	28630	28682	46854	46854					0.12459876308253115
LKELRIKHGN	10	Unmodified	_LKELRIKHGN_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;DMTF1|p.N330Kfs*8|1|0.11|ENSG00000135164|chr7:87184566-87184567|TT/-|frameshift_variant	nc|ENSG00000135164|Q9Y222-5|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.3668212890625	2	604.367121	1206.71969	-0.44133	-0.00026673	-0.063761	-3.8535E-05	-0.5051	-0.00030526	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.1237	1	13226	13226		24.519	5.4157	1	5077600			41487	4867	28630	28682	46855	46855					0.12459876308253115
LKELRIKHGN	10	Unmodified	_LKELRIKHGN_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;DMTF1|p.N330Kfs*8|1|0.11|ENSG00000135164|chr7:87184566-87184567|TT/-|frameshift_variant	nc|ENSG00000135164|Q9Y222-5|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.36669921875	2	604.367121	1206.71969	-0.25622	-0.00015485	-0.39433	-0.00023832	-0.65055	-0.00039317	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	1.037	1	12854	12854		36.447	11.928	1	4809400			41488	4867	28630	28682	46856	46856					0.12459876308253115
LKELRIKHGN	10	Unmodified	_LKELRIKHGN_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;DMTF1|p.N330Kfs*8|1|0.11|ENSG00000135164|chr7:87184566-87184567|TT/-|frameshift_variant	nc|ENSG00000135164|Q9Y222-5|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3667602539062	2	604.367121	1206.71969	-0.63259	-0.00038232	0.014142	8.5468E-06	-0.61845	-0.00037377	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	1.1325	1	12882	12882		29.17	0	1	4804600			41489	4867	28630	28682	46857	46857					0.12459876308253115
LKELRNKD	8	Unmodified	_LKELRNKD_					0	0	0		nc|ENSG00000144837|Q53H76-4|PLA1A;nc|ENSG00000144837|Q53H76-2|PLA1A;nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A	nc|ENSG00000144837|Q53H76-4|PLA1A	nc|ENSG00000144837|Q53H76-4|PLA1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.8133239746094	2	508.298373	1014.58219	-0.011608	-5.9004E-06	-2.7194	-0.0013822	-2.731	-0.0013881	508.2965407277114	92.671	0.75299	92.678	92.302	93.055	0.0077286					24	17	2	0	0	0	0.027866	1	11724	11724		38.806	0	1	176220			41490	5775	28631	28683	46858	46858					0.07548547708847764
LKELSFYACR	10	Unmodified	_LKELSFYACR_					0	0	0			REV__ENST00000609314.5_1_X:148619180-148620284:-|nuORF	REV__ENST00000609314.5_1_X:148619180-148620284:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.8988037109375	3	410.549753	1228.62743	0.35408	0.00014537	-2.2292	-0.00091519	-1.8751	-0.00076982	410.54861232025104	18.293	0.59444	18.09	17.816	18.411	-0.20371					20	11	2	0	0	0	0.03519	1	292	292		19.263	2.5453	1	34264	+		41491	32670	28632	28684	46859	46859					0.022260301797132342
LKELTGSPPR	10	Unmodified	_LKELTGSPPR_					0	0	0			REV__ENST00000469694.5_1_2:241404001-241405704:+|nuORF	REV__ENST00000469694.5_1_2:241404001-241405704:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.342529296875	2	549.319306	1096.62406	-0.502	-0.00027576	-1.6891	-0.00092785	-2.1911	-0.0012036	549.3181761312392	50.319	0.1891	50.168	50.065	50.254	-0.1512					6	5	2	0	0	0	0.03519	1	5229	5229		19.104	0	1	116030	+		41492	20274	28633	28685	46860	46860					0.0796110339738334
LKELTMNL	8	Unmodified	_LKELTMNL_					0	0	0			REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.80511474609375	2	481.272978	960.531403	-0.6198	-0.00029829	-0.85804	-0.00041295	-1.4778	-0.00071125	481.2720224661195	53.357	0.69595	53.209	52.797	53.493	-0.14724					24	18	2	0	0	0	0.027866	1	5777	5777		42.396	0	1	193760	+		41493	21033	28634	28686	46861	46861					0.04955882339629625
LKEMIIDAL	9	Unmodified	_LKEMIIDAL_					0	0	0			REV__ENSG00000112578|ENST00000230340|BYSL	REV__ENSG00000112578|ENST00000230340|BYSL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3041381835938	2	523.301736	1044.58892	0.35068	0.00018351	3.4109	0.0017849	3.7616	0.0019684	523.3033589717056	90.251	1.1125	90.113	89.792	90.904	-0.13824					76	26	4	0	0	0	0.67687	1	11019	11019		47.657	5.2612	1	1624800	+		41494	22014	28635	28687	46862	46862					0.06840724545190824
LKEMRKNLTK	10	Unmodified	_LKEMRKNLTK_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5232238769531	3	420.920069	1259.73838	0.52597	0.00022139	-2.0425	-0.00085971	-1.5165	-0.00063832	420.91907188655597	19.051	0.84091	18.89	18.639	19.48	-0.16079					31	16	3	0	0	0	0.03519	1	401	401		34.087	0	1	73892			41495	9653	28636	28688	46863	46863					0.11889669887796117
LKENKYLIV	9	Unmodified	_LKENKYLIV_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3397827148438	2	560.342249	1118.66995	0.14489	8.1187E-05	-3.9654	-0.002222	-3.8205	-0.0021408	560.3398724189238	101.17	1.8281	101.17	100.81	102.63	-0.0054474					131	41	5	0	0	0	0.99229	1	12930	12930		21.96	1.013	1	15569000			41496	5538	28637	28689	46864	46864					0.11535748579581195
LKEPILEEK	9	Unmodified	_LKEPILEEK_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15;REV__ENSG00000172766|ENST00000379406|NAA16	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2716064453125	2	549.823889	1097.63323	-1.2826	-0.00070519	3.139	0.0017259	1.8564	0.0010207	550.3248802289592	55.757	0.14973	55.855	55.744	55.894	0.098015					5	3	2	0	0	0	0.024539	1	6098	6098		27.882	3.6795	1	50610	+		41497	25703;26707	28638	28690	46865	46865					0.08831451963033032
LKEPKTAVLT	10	Unmodified	_LKEPKTAVLT_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.28955078125	2	550.339707	1098.66486	0.15549	8.5573E-05	-1.1772	-0.00064786	-1.0217	-0.00056228	550.3389364006762	47.945	0.596	47.758	47.561	48.157	-0.18684					34	15	3	0	0	0	0.03519	1	4745	4745		31.53	3.6476	1	443090	+		41498	25208	28639	28691	46866	46866					0.1194744471699778
LKEPLEQKD	9	Unmodified	_LKEPLEQKD_					0	0	0		ENST00000356609.2_1_1:220088793-220101375:-|nuORF;ENSG00000196660|ENST00000366926|SLC30A10;nc|ENSG00000196660|Q6XR72-2|SLC30A10;ENST00000484079.1_1_1:220088793-220091843:-|nuORF;SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	ENST00000356609.2_1_1:220088793-220101375:-|nuORF;SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2916870117188	2	550.303321	1098.59209	-0.55935	-0.00030781	3.6998	0.002036	3.1404	0.0017282	550.3049669690607	65.299	0.37105	65.299	65.158	65.529	0					15	10	2	0	0	0	0.024456	1	7767	7767		42.864	11.334	1	322410			41499	9908;37884	28640	28692	46867	46867					0.04673690923573304
LKEPLEQKD	9	Unmodified	_LKEPLEQKD_					0	0	0		ENST00000356609.2_1_1:220088793-220101375:-|nuORF;ENSG00000196660|ENST00000366926|SLC30A10;nc|ENSG00000196660|Q6XR72-2|SLC30A10;ENST00000484079.1_1_1:220088793-220091843:-|nuORF;SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	ENST00000356609.2_1_1:220088793-220101375:-|nuORF;SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2931518554688	2	550.303321	1098.59209	-0.7805	-0.00042951	3.6108	0.001987	2.8303	0.0015575	550.3047398933974	65.662	0.44731	65.39	65.195	65.642	-0.27283					19	12	2	0	0	0	0.024359	1	7785	7785		47.96	10.148	1	270860			41500	9908;37884	28640	28692	46868	46868					0.04673690923573304
LKEPLEQKD	9	Unmodified	_LKEPLEQKD_					0	0	0		ENST00000356609.2_1_1:220088793-220101375:-|nuORF;ENSG00000196660|ENST00000366926|SLC30A10;nc|ENSG00000196660|Q6XR72-2|SLC30A10;ENST00000484079.1_1_1:220088793-220091843:-|nuORF;SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	ENST00000356609.2_1_1:220088793-220101375:-|nuORF;SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	SLC30A10|p.D386N|1|0.34|ENSG00000196660|chr1:219915751-219915751|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.303321	1098.59209	-0.33564	-0.0001847	3.3152	0.0018243	2.9795	0.0016396	550.8069226675486	65.697	0.16987	65.456	65.33	65.5	-0.24145	0.077481	-0.00024875	NaN	32.751	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62739			41501	9908;37884	28640	28692							0.04673690923573304
LKEPMTVSSD	10	Unmodified	_LKEPMTVSSD_					0	0	0		ENSG00000164879|ENST00000285381|CA3	ENSG00000164879|ENST00000285381|CA3	ENSG00000164879|ENST00000285381|CA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.2569580078125	2	553.773539	1105.53253	-0.2602	-0.00014409	-3.1461	-0.0017422	-3.4063	-0.0018863	553.7717789185945	45.206	0.22543	44.954	44.865	45.091	-0.25252					8	5	2	0	0	0	0.03519	1	4261	4261		37.812	0	1	130080			41502	7332	28641	28693	46869	46869					-0.016019480821114485
LKEPREKP	8	Unmodified	_LKEPREKP_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.79571533203125	2	498.795466	995.57638	0.12946	6.4576E-05	-0.48239	-0.00024062	-0.35293	-0.00017604	498.7951140358253	58.67	0.79811	58.483	58.173	58.971	-0.18705					44	21	3	0	0	0	0.6536	1	6625	6625		71.296	2.5089	1	3092700	+		41503	27045	28642	28694	46870	46870					0.07841449197178463
LKEQLAEQEI	10	Unmodified	_LKEQLAEQEI_					0	0	0			REV__nc|ENSG00000148019|Q5JTW2|CEP78	REV__nc|ENSG00000148019|Q5JTW2|CEP78	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.5545349121094	3	400.887199	1199.63977	1.0883	0.00043629	3.9312	0.001576	5.0195	0.0020122	400.8887851977193	26.843	0.69814	26.843	26.7	27.398	0					37	17	3	0	0	0	0.03519	1	1412	1412		53.089	13.031	1	877840	+		41504	24590	28644	28695	46871	46871					0.04793345123766812
LKEQVAPIN	9	Unmodified	_LKEQVAPIN_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7649230957031	2	506.295299	1010.57605	-0.74849	-0.00037896	-0.28386	-0.00014371	-1.0323	-0.00052267	506.2952337156046	80.485	0.42315	80.507	80.189	80.612	0.021446					12	9	2	0	0	0	0.024367	1	9894	9894		44.377	0	1	84107	+		41505	23178	28645	28696	46872	46872					0.07118029477328491
LKERESVPSY	10	Unmodified	_LKERESVPSY_					0	0	0		ENSG00000163827|ENST00000395905|LRRC2	ENSG00000163827|ENST00000395905|LRRC2	ENSG00000163827|ENST00000395905|LRRC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.81146240234375	3	403.215427	1206.62445	-0.86602	-0.00034919	3.2388	0.0013059	2.3728	0.00095674	403.21655143500084	28.845	0.34613	28.599	28.363	28.709	-0.24524					9	7	2	0	0	0	0.03519	1	1720	1720		39.873	11.296	1	37511			41506	7154	28646	28697	46873	46873					0.029404783265590595
LKERKSGRSGE	11	Unmodified	_LKERKSGRSGE_					0	0	0			REV__ENST00000264025.7_1_11:119534994-119535162:-|nuORF	REV__ENST00000264025.7_1_11:119534994-119535162:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2315673828125	3	416.233592	1245.67895	-0.81461	-0.00033907	-4.0486	-0.0016852	-4.8632	-0.0020242	416.2319342734464	21.111	2.258	20.898	20.525	22.783	-0.2128					156	46	7	0	0	0	1.0123	1	615	615		34.087	1.336	1	3140900	+		41507	29709	28647	28698	46874	46874					0.06593490197997198
LKERPVEP	8	Unmodified	_LKERPVEP_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7795715332031	2	484.282192	966.549831	-0.76911	-0.00037247	1.3734	0.0006651	0.60426	0.00029263	484.2824098853185	39.142	0.46206	39.043	38.807	39.269	-0.098755					17	12	2	0	0	0	0.027866	1	3293	3293		24.203	4.8428	1	172960	+		41508	25008	28648	28699	46875	46875					0.06521760305849966
LKERPVEP	8	Unmodified	_LKERPVEP_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.282192	966.549831	-0.72249	-0.00034989	3.0171	0.0014611	2.2946	0.0011112	484.2829309787658	39.155	0.46669	38.991	38.761	39.228	-0.16458	-0.02624	0.0011054	NaN	17.365	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152200	+		41509	25008	28648	28699							0.06521760305849966
LKESAKKSD	9	Unmodified	_LKESAKKSD_					0	0	0			REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000109061|ENST00000226207|MYH1	REV__ENSG00000125414|ENST00000245503|MYH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.8139343261719	2	503.282389	1004.55022	0.38607	0.0001943	3.8275	0.0019263	4.2136	0.0021206	503.28435674862243	95.95	0.75012	95.956	95.519	96.269	0.0065002					27	17	2	0	0	0	0.024313	1	12220	12220		69.628	7.5202	1	694470	+		41510	22814;23337;21775	28649	28700	46876	46876					0.048131352350424095
LKESHHYL	8	Unmodified	_LKESHHYL_					0	0	0		ENST00000421606.6_2_16:55801397-55827869:+|nuORF	ENST00000421606.6_2_16:55801397-55827869:+|nuORF	ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.30322265625	2	513.771991	1025.52943	0.45584	0.0002342	-2.2439	-0.0011528	-1.788	-0.00091864	513.7711138583757	37.026	0.3495	36.817	36.726	37.075	-0.2092					11	8	2	0	0	0	0.027866	1	2965	2965		31.955	3.7006	1	105550			41511	13995	28650	28701	46877	46877					0.01768589646030705
LKESSLADI	9	Unmodified	_LKESSLADI_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79815673828125	2	488.27149	974.528426	-0.042101	-2.0556E-05	-1.2273	-0.00059927	-1.2694	-0.00061982	488.2709569306452	75.805	0.6921	75.817	75.436	76.128	0.011642					28	18	2	0	0	0	0.02435	1	9200	9200		34.173	0	1	279320	+		41512	22104	28651	28702	46878	46878					0.040143304864727725
LKETFTLYY	9	Unmodified	_LKETFTLYY_					0	0	0			REV__MER58A_dup5652|chr7:93810599-93810805:-|1.7841562390201156|0.020634993768474|6.43|482.0|3|1|sense	REV__MER58A_dup5652|chr7:93810599-93810805:-|1.7841562390201156|0.020634993768474|6.43|482.0|3|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.3299560546875	2	589.310615	1176.60668	-0.56888	-0.00033525	-1.9073	-0.001124	-2.4761	-0.0014592	589.8109008320548	41.762	0.39711	41.639	41.456	41.853	-0.12299					18	10	2	0	0	0	0.024541	1	3704	3704		30.504	12.242	1	118400	+		41513	36370	28652	28703	46879	46879					0.02543763071707872
LKETRISF	8	Unmodified	_LKETRISF_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000470300.5_1_1:247004234-247028597:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7745361328125	2	497.290017	992.565481	0.036251	1.8027E-05	3.5537	0.0017672	3.5899	0.0017852	497.29147058243564	72.931	0.37778	72.931	72.656	73.034	0					15	8	2	0	0	0	0.027866	1	8897	8897		24.203	0	1	198230			41514	6329	28653	28704	46880	46880					0.068900468229117
LKETRISF	8	Unmodified	_LKETRISF_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000470300.5_1_1:247004234-247028597:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7745361328125	2	497.290017	992.565481	0.071547	3.558E-05	2.7198	0.0013525	2.7913	0.0013881	497.29119963191323	73.218	0.44785	72.946	72.719	73.167	-0.27126					19	10	2	0	0	0	0.027866	1	8907	8907		45.952	0	1	184370			41515	6329	28653	28704	46881	46881					0.068900468229117
LKETYKLLLS	10	Unmodified	_LKETYKLLLS_					0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3663940429688	2	604.368464	1206.72238	-1.4686	-0.00088758	-1.3678	-0.00082668	-2.8364	-0.0017143	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.0975	1	13242	13242		28.081	0	1	4767200	+		41516	20455	28654	28705	46882	46882					0.12728286922560983
LKEVGKRN	8	Unmodified	_LKEVGKRN_					0	0	0		ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.28765869140625	2	472.287808	942.561064	-0.12415	-5.8633E-05	-0.45206	-0.0002135	-0.57621	-0.00027214	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	1.0574	1	11890	11890		27.882	2.4321	1	53299000			41517	12715	28655	28706	46883	46883					0.0874858239999412
LKEVGKRN	8	Unmodified	_LKEVGKRN_					0	0	0		ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2875061035156	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.97794	1	11613	11613		40.778	1.5253	1	42478000			41518	12715	28655	28706	46884	46884					0.0874858239999412
LKEVGKRN	8	Unmodified	_LKEVGKRN_					0	0	0		ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	ENST00000358387.8_1_5:134235382-134235466:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.287841796875	2	472.287808	942.561064	-0.32971	-0.00015572	-0.19839	-9.3697E-05	-0.5281	-0.00024942	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.97794	1	11587	11587		40.778	1.5253	1	42351000			41519	12715	28655	28706	46885	46885					0.0874858239999412
LKEVLEIVE	9	Unmodified	_LKEVLEIVE_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-2|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2926025390625	2	536.31844	1070.62233	-1.6681	-0.00089464	-3.466	-0.0018589	-5.1342	-0.0027535	536.3173642137025	44.608	0.27134	44.459	44.322	44.593	-0.1488					11	7	2	0	0	0	0.024397	1	4243	4243		31.53	0	1	83197			41520	18506	28656	28707	46886	46886					0.08984049588752896
LKFAPENY	8	Unmodified	_LKFAPENY_					0	0	0		ENST00000302418.4_1_10:32299749-32299908:-|nuORF	ENST00000302418.4_1_10:32299749-32299908:-|nuORF	ENST00000302418.4_1_10:32299749-32299908:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.24298095703125	2	491.255643	980.496732	-0.14917	-7.3281E-05	3.3072	0.0016247	3.158	0.0015514	491.25730819399297	37.395	0.43093	37.186	36.923	37.354	-0.2092					18	10	2	0	0	0	0.027866	1	2999	2999		42.396	6.7778	1	373560			41521	11956	28657	28708	46887	46887					0.005703825231762494
LKFCIIGWGL	10	Unmodified	_LKFCIIGWGL_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8436889648438	2	575.328088	1148.64162	-0.63018	-0.00036256	-0.67583	-0.00038882	-1.306	-0.00075138	575.3274057365867	89.394	0.5098	89.231	89.092	89.602	-0.1626					16	11	2	0	0	0	0.03519	1	10929	10929		21.96	1.013	1	86470			41522	3212	28658	28709	46888	46888					0.07324727398668074
LKFEVPIDV	9	Unmodified	_LKFEVPIDV_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2879028320312	2	530.307875	1058.6012	-0.79088	-0.00041941	1.564	0.00082943	0.77316	0.00041001	530.308745508351	95.455	0.46999	95.455	95.265	95.735	0					15	10	2	0	0	0	0.0242	1	12162	12162		69.628	16.276	1	66881	+		41523	21560	28659	28710	46889	46889					0.07424084279887211
LKFEVPIDV	9	Unmodified	_LKFEVPIDV_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.307875	1058.6012	0.24607	0.00013049	0.11456	6.075E-05	0.36063	0.00019124	530.3082508061048	95.45	0.51542	95.454	95.226	95.741	0.0041199	0.10657	-0.0011363	NaN	69.628	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49855	+		41524	21560	28659	28710							0.07424084279887211
LKFEVPIDV	9	Unmodified	_LKFEVPIDV_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.307875	1058.6012	-0.35362	-0.00018753	1.6692	0.00088518	1.3156	0.00069765	530.3077618050263	95.271	0.13068	95.134	95.025	95.156	-0.13689	-0.21395	0.00051256	NaN	69.628	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26963	+		41525	21560	28659	28710							0.07424084279887211
LKFFSKIY	8	Unmodified	_LKFFSKIY_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.325439453125	2	523.307678	1044.6008	0.25708	0.00013453	-3.741	-0.0019577	-3.484	-0.0018232	523.3056949727048	79.515	0.66844	79.364	78.943	79.612	-0.15051					25	15	2	0	0	0	0.027866	1	9454	9454		38.806	0	1	199160			41526	5065	28660	28711	46890	46890					0.0802870935071951
LKFGMTPS	8	Unmodified	_LKFGMTPS_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.7663879394531	2	440.733489	879.452425	0.081794	3.605E-05	-4.4819	-0.0019753	-4.4001	-0.0019393	440.7290437346672	37.402	0.39046	37.192	36.923	37.313	-0.2092					14	9	2	0	0	0	0.027866	1	2973	2973		29.15	0	1	55049			41527	7391	28661	28712	46891	46891					0.007876551053527692
LKFGQKIF	8	Unmodified	_LKFGQKIF_					0	0	0		ARHGAP1|p.F180L|1|0.1|ENSG00000175220|chr11:46681106-46681106|G/T|missense_variant	ARHGAP1|p.F180L|1|0.1|ENSG00000175220|chr11:46681106-46681106|G/T|missense_variant	ARHGAP1|p.F180L|1|0.1|ENSG00000175220|chr11:46681106-46681106|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7561340332031	2	490.80002	979.585488	-0.81657	-0.00040077	-3.9236	-0.0019257	-4.7402	-0.0023265	490.79796345492844	43.756	0.43159	43.756	43.44	43.872	0					14	11	2	0	0	0	0.027866	1	4093	4093		35.201	9.7505	1	173670			41528	118	28662	28713	46892	46892					0.09487842553494374
LKFIDMHKAD	10	Unmodified	_LKFIDMHKAD_					0	0	0			REV__ENST00000442952.1_1_10:121664067-121664139:+|nuORF	REV__ENST00000442952.1_1_10:121664067-121664139:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2032775878906	3	406.549753	1216.62743	0.73159	0.00029743	1.5379	0.00062524	2.2695	0.00092267	406.5503999237001	22.78	0.23167	22.578	22.468	22.7	-0.20199					6	4	2	0	0	0	0.03519	1	823	823		25.126	0	1	11061	+		41529	32572	28663	28714	46893	46893					0.02778030179729285
LKFIDMHKAD	10	Unmodified	_LKFIDMHKAD_					0	0	0			REV__ENST00000442952.1_1_10:121664067-121664139:+|nuORF	REV__ENST00000442952.1_1_10:121664067-121664139:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	406.549753	1216.62743	0.66833	0.00027171	6.3849	0.0025958	7.0532	0.0028675	406.5521375722364	22.251	0.32532	22.251	22.06	22.385	0	-0.16303	0.0025432	NaN	25.126	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15784	+		41530	32572	28663	28714							0.02778030179729285
LKFKIIVTA	9	Unmodified	_LKFKIIVTA_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;ITM2B-RB1|2|fusion;ITM2B-RB1|3|fusion	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8075561523438	2	516.844428	1031.6743	-0.5278	-0.00027279	3.4392	0.0017775	2.9114	0.0015047	516.8472126086963	93.656	0.25114	93.651	93.495	93.746	-0.0042038					9	5	2	0	0	0	0.024541	1	11877	11877		17.365	0	1	45284			41531	5359	28664	28715	46894	46894					0.15973257793189077
LKFLIANL	8	Unmodified	_LKFLIANL_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7684020996094	2	466.302396	930.590239	1.2025	0.00056072	-0.99994	-0.00046627	0.20254	9.4443E-05	466.301977422545	73.964	0.63928	73.964	73.784	74.424	0					21	14	2	0	0	0	0.027866	1	9080	9080		45.952	5.3793	1	271970	+		41532	23219	28665	28716	46895	46895					0.12216726696283331
LKFLLLIL	8	Unmodified	_LKFLLLIL_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.81341552734375	2	486.846439	971.678326	-0.94219	-0.0004587	0.4815	0.00023441	-0.4607	-0.00022429	486.8467441943735	21.599	0.19256	21.386	21.266	21.458	-0.2128					5	3	2	0	0	0	0.027866	1	657	657		14.664	0	1	8939.3	+		41533	25874	28666	28717	46896	46896					0.191353472869082
LKFPHLIF	8	Unmodified	_LKFPHLIF_					0	0	0		ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7878723144531	2	507.810388	1013.60622	-0.75505	-0.00038342	0.70697	0.00035901	-0.048075	-2.4413E-05	507.81011514958766	20.166	0.72799	20.166	19.644	20.372	0					22	14	2	0	0	0	0.027866	1	447	447		13.775	0	1	72095			41534	3242	28667	28718	46897	46897					0.09996432933178312
LKFRFDKLSH	10	Unmodified	_LKFRFDKLSH_					0	0	0		nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2	nc|ENSG00000132359|Q684P5-3|RAP1GAP2	nc|ENSG00000132359|Q684P5-3|RAP1GAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.2659912109375	3	430.915423	1289.72444	0.047471	2.0456E-05	0.96378	0.00041531	1.0112	0.00043576	430.91607605393466	48.936	1.0237	48.936	48.413	49.437	0					43	28	2	0	0	0	0.03519	1	4958	4958		20.03	0	1	116570			41535	4596	28668	28719	46898	46898					0.09116760451024675
LKFRKKKV	8	Unmodified	_LKFRKKKV_					0	0	0		ENST00000378230.7_1_1:3743286-3745840:-|nuORF	ENST00000378230.7_1_1:3743286-3745840:-|nuORF	ENST00000378230.7_1_1:3743286-3745840:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.8358764648438	2	523.863486	1045.71242	-1.1765	-0.00061635	3.0665	0.0016064	1.89	0.00099009	523.8631289905956	60.845	0.1916	60.845	60.692	60.884	0					6	4	2	0	0	0	0.027866	1	6994	6994		13.775	5.544	1	42769			41536	13233	28669	28720	46899	46899					0.19139188498502335
LKFVHKRK	8	Unmodified	_LKFVHKRK_					0	0	0			REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__nc|ENSG00000173898|O15020-2|SPTBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7708740234375	2	528.345461	1054.67637	-1.0682	-0.00056438	0.12919	6.8257E-05	-0.939	-0.00049612	528.3453185970064	47.717	0.71028	47.717	47.464	48.174	0					40	21	3	0	0	0	0.027866	1	4868	4868		25.45	0	1	754870	+		41537	26818	28670	28721	46900	46900					0.15121731321642073
LKFVILHA	8	Unmodified	_LKFVILHA_					0	0	0		nc|ENSG00000243414|Q86XR7-2|TICAM2;ENSG00000243414|ENST00000427199|TICAM2	nc|ENSG00000243414|Q86XR7-2|TICAM2	nc|ENSG00000243414|Q86XR7-2|TICAM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2925109863281	2	470.802563	939.590573	-0.087695	-4.1287E-05	-4.2861	-0.0020179	-4.3738	-0.0020592	470.80034617692223	60.805	0.50747	60.599	60.421	60.928	-0.20599					15	12	2	0	0	0	0.027866	1	6824	6824		39.021	0	1	131890			41538	18760	28671	28722	46901	46901					0.11836146416123938
LKFVRLLRFSR	11	Unmodified	_LKFVRLLRFSR_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.79248046875	3	478.973384	1433.89832	-0.86565	-0.00041462	3.094	0.001482	2.2284	0.0010673	478.97485220700594	48.78	1.1224	48.5	48.039	49.161	-0.27977					59	30	3	0	0	0	0.024876	1	4943	4943		9.2118	5.8031	1	289970	+		41539	27755;24322;19859;27620;28233	28672	28723	46902	46902					0.19872965947138255
LKFVRLLRFSR	11	Unmodified	_LKFVRLLRFSR_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A;REV__ENSG00000185313|ENST00000449082|SCN10A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.79248046875	3	478.973384	1433.89832	-0.066313	-3.1762E-05	2.6595	0.0012738	2.5932	0.0012421	479.308889364791	49.833	0.7584	49.553	48.934	49.693	-0.27977					29	19	2	0	0	0	0.024876	1	4943	4943		9.2118	5.8031	1	161490	+		41540	27755;24322;19859;27620;28233	28672	28723	46903	46903					0.19872965947138255
LKFVSIPLSTL	11	Unmodified	_LKFVSIPLSTL_					0	0	0		ENST00000507167.1_1_4:99407804-99579377:-|nuORF	ENST00000507167.1_1_4:99407804-99579377:-|nuORF	ENST00000507167.1_1_4:99407804-99579377:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.58746337890625	3	406.588313	1216.74311	-0.18538	-7.5374E-05	-2.4749	-0.0010063	-2.6603	-0.0010816	406.5876067950022	25.442	1.4271	25.215	24.887	26.314	-0.22683					124	36	6	0	0	0	0.97559	1	1222	1222		42.243	5.7958	1	39997000			41541	15753	28673	28724	46904	46904					0.14340877302220179
LKFYLLLFLQR	11	Unmodified	_LKFYLLLFLQR_					0	0	0			REV__ENST00000371558.6_1_X:118717417-118717525:+|nuORF	REV__ENST00000371558.6_1_X:118717417-118717525:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.30267333984375	3	485.302507	1452.88569	-0.14311	-6.9453E-05	0.29748	0.00014437	0.15437	7.4915E-05	485.3026494534992	17.645	1.6869	17.438	17.166	18.853	-0.20669					80	33	4	0	0	0	1.1062	1	192	192		9.6461	0.43434	1	381270	+		41542	31165	28674	28725	46905	46905					0.17736509764245056
LKGAKKVH	8	Unmodified	_LKGAKKVH_					0	0	0		ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.7662048339844	2	440.789987	879.565421	-1.1174	-0.00049256	-0.93229	-0.00041094	-2.0497	-0.0009035	440.7905549952099	37.313	0.42857	37.093	36.962	37.39	-0.2195					19	10	2	0	0	0	0.027866	1	3003	3003		20.482	5.8177	1	258420			41543	1931	28675	28726	46906	46906					0.12082091613558532
LKGDLKGPE	9	Unmodified	_LKGDLKGPE_					0	0	0		AHNAK|p.E3569K|1|0.62|ENSG00000124942|chr11:62523712-62523712|C/T|missense_variant	AHNAK|p.E3569K|1|0.62|ENSG00000124942|chr11:62523712-62523712|C/T|missense_variant	AHNAK|p.E3569K|1|0.62|ENSG00000124942|chr11:62523712-62523712|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.24346923828125	2	478.7742	955.533846	1.1146	0.00053366	-2.0243	-0.0009692	-0.9097	-0.00043554	478.77299196221117	40.705	0.35473	40.582	40.407	40.762	-0.12318					14	9	2	0	0	0	0.024257	1	3557	3557		58.23	10.314	1	325730			41544	49	28676	28727	46907	46907					0.0543005406894963
LKGDLKGPE	9	Unmodified	_LKGDLKGPE_					0	0	0		AHNAK|p.E3569K|1|0.62|ENSG00000124942|chr11:62523712-62523712|C/T|missense_variant	AHNAK|p.E3569K|1|0.62|ENSG00000124942|chr11:62523712-62523712|C/T|missense_variant	AHNAK|p.E3569K|1|0.62|ENSG00000124942|chr11:62523712-62523712|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.7742	955.533846	-0.33775	-0.00016171	-0.28678	-0.0001373	-0.62453	-0.00029901	478.7737017387826	40.748	0.34153	40.771	40.629	40.97	0.023006	0.094635	0.0011024	NaN	58.23	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407820			41545	49	28676	28727							0.0543005406894963
LKGDLLTFGGI	11	Unmodified	_LKGDLLTFGGI_					0	0	0			REV__ENSG00000105122|ENST00000343625|RASAL3	REV__ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3309326171875	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0592	1	11117	11117		22.58	0.61977	1	4116000	+		41546	21493	28677	28728	46908	46908					0.0881915819995811
LKGDRRTY	8	Unmodified	_LKGDRRTY_					0	0	0			REV__ENSG00000115548|ENST00000312912|KDM3A	REV__ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7666320800781	2	504.78289	1007.55123	-0.19325	-9.7549E-05	1.8819	0.00094994	1.6886	0.0008524	504.78388946163545	63.63	0.61202	63.437	63.186	63.798	-0.19243					23	15	2	0	0	0	0.027866	1	7234	7234		29.15	3.6994	1	274750	+		41547	22212	28678	28729	46909	46909					0.04775394394596333
LKGFHESPF	9	Unmodified	_LKGFHESPF_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2659912109375	2	531.274367	1060.53418	-1.1252	-0.00059777	-2.5931	-0.0013776	-3.7182	-0.0019754	531.7757349068315	33.423	0.75362	33.257	32.958	33.711	-0.16565					30	18	3	0	0	0	0.024541	1	2423	2423		24.203	4.8428	1	90750	+		41548	23482	28679	28730	46910	46910					0.0063347378879825555
LKGFHESPF	9	Unmodified	_LKGFHESPF_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.274367	1060.53418	-1.2358	-0.00065655	-2.3442	-0.0012454	-3.58	-0.001902	531.2731935827022	33.138	0.58371	33.138	32.903	33.487	0	0.044819	0.00011179	NaN	17.365	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208280	+		41549	23482	28679	28730							0.0063347378879825555
LKGFHESPF	9	Unmodified	_LKGFHESPF_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.274367	1060.53418	-1.016	-0.00053978	-2.3078	-0.0012261	-3.3238	-0.0017658	531.2729390197039	32.911	0.66309	32.918	32.625	33.288	0.0066261	-0.17563	0.00015049	NaN	17.365	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251010	+		41550	23482	28679	28730							0.0063347378879825555
LKGFHESPF	9	Unmodified	_LKGFHESPF_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.274367	1060.53418	-0.0052065	-2.7661E-06	-3.1336	-0.0016648	-3.1388	-0.0016676	531.2724555037543	32.752	0.78358	32.815	32.502	33.286	0.062885	-0.2781	-0.00072704	NaN	17.365	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305330	+		41551	23482	28679	28730							0.0063347378879825555
LKGFHESPF	9	Unmodified	_LKGFHESPF_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.274367	1060.53418	-0.85721	-0.00045542	-1.0377	-0.00055132	-1.8949	-0.0010067	531.7750863436121	33.539	0.27087	33.338	33.171	33.442	-0.20019	0.24488	0.0014999	NaN	17.365	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110610	+		41552	23482	28679	28730							0.0063347378879825555
LKGGIKAR	8	Unmodified	_LKGGIKAR_					0	0	0			REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.7820129394531	2	421.782162	841.549771	2.3674	0.00099853	-2.2234	-0.0009378	0.144	6.0736E-05	421.7811107279661	24.62	0.96249	24.44	23.893	24.855	-0.18089					35	21	3	0	0	0	0.99042	1	1068	1068		38.806	5.2906	1	746690	+		41553	34356	28680	28731	46911	46911					0.12265805096501481
LKGGIKAR	8	Unmodified	_LKGGIKAR_					0	0	0			REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	421.782162	841.549771	-0.18114	-7.6402E-05	0.25882	0.00010916	0.077676	3.2762E-05	421.7821969960261	24.789	1.0724	24.574	24.044	25.116	-0.2151	0.10524	0.00062988	NaN	38.806	36	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569720	+		41554	34356	28680	28731							0.12265805096501481
LKGGIKAR	8	Unmodified	_LKGGIKAR_					0	0	0			REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	421.782162	841.549771	-0.03464	-1.461E-05	0.34515	0.00014558	0.31051	0.00013097	421.78220656268473	24.567	0.94787	24.392	23.873	24.821	-0.17484	-0.076308	0.00070271	NaN	38.806	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722870	+		41555	34356	28680	28731							0.12265805096501481
LKGGIKAR	8	Unmodified	_LKGGIKAR_					0	0	0			REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	421.782162	841.549771	2.3674	0.00099853	-2.2234	-0.0009378	0.144	6.0736E-05	421.7811107279661	24.62	0.96249	24.44	23.893	24.855	-0.18089	-0.028936	-0.001464	NaN	38.806	35	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	746690	+		41556	34356	28680	28731							0.12265805096501481
LKGGRLPEL	9	Unmodified	_LKGGRLPEL_					0	0	0		ENST00000586411.1_1_17:43628025-43635826:-|nuORF	ENST00000586411.1_1_17:43628025-43635826:-|nuORF	ENST00000586411.1_1_17:43628025-43635826:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.29010009765625	2	491.805834	981.597115	-0.40071	-0.00019707	-0.39355	-0.00019355	-0.79426	-0.00039062	491.8054345189145	44.76	0.83151	44.797	44.375	45.207	0.036903					58	23	4	0	0	0	0.023817	1	4236	4236		60.972	18.576	1	1290500			41557	17242	28681	28732	46912	46912					0.10558039576824285
LKGHEGSVACL	11	Unmodified	_LKGHEGSVACL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.2688598632812	2	557.289691	1112.56483	-1.0998	-0.00061291	-2.7641	-0.0015404	-3.864	-0.0021533	557.2881309708811	48.561	1.0871	48.285	47.928	49.015	-0.27598					56	27	3	0	0	0	0.024732	1	4873	4873		25.574	0	1	2269100			41558	1790	28682	28733	46913	46913					0.013048841115278265
LKGHEGSVACL	11	Unmodified	_LKGHEGSVACL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.289691	1112.56483	-0.38874	-0.00021664	-3.3856	-0.0018868	-3.7744	-0.0021034	557.2877518594158	48.3	1.507	48.3	48.037	49.544	0	0.072988	-7.5455E-05	NaN	35.152	82	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2287900			41559	1790	28682	28733							0.013048841115278265
LKGHEGSVACL	11	Unmodified	_LKGHEGSVACL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.289691	1112.56483	-0.78429	-0.00043708	-3.0183	-0.0016821	-3.8026	-0.0021192	557.2879618097065	48.451	1.5708	48.298	48.023	49.594	-0.15301	0.070639	0.00033392	NaN	35.152	86	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2260000			41560	1790	28682	28733							0.013048841115278265
LKGHEGSVACL	11	Unmodified	_LKGHEGSVACL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.289691	1112.56483	-0.24155	-0.00013461	-3.7033	-0.0020638	-3.9449	-0.0021984	557.2874859368732	48.142	1.5592	48.209	47.936	49.495	0.066795	-0.018218	-0.00042956	NaN	35.152	81	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2232300			41561	1790	28682	28733							0.013048841115278265
LKGHEGSVACL	11	Unmodified	_LKGHEGSVACL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.289691	1112.56483	-0.19809	-0.00011039	-3.7503	-0.00209	-3.9484	-0.0022004	557.2875121808694	48.344	1.3983	48.157	47.749	49.148	-0.18684	-0.069831	-0.0004819	NaN	35.152	70	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2099000			41562	1790	28682	28733							0.013048841115278265
LKGHHKLY	8	Unmodified	_LKGHHKLY_					0	0	0			REV__ENSG00000182568|ENST00000338745|SATB1	REV__ENSG00000182568|ENST00000338745|SATB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2555236816406	2	498.292894	994.571235	-0.28604	-0.00014253	-1.8943	-0.00094391	-2.1803	-0.0010864	498.291866342433	62.127	0.46814	61.913	61.7	62.168	-0.21375					15	11	3	0	0	0	0.027866	1	6997	6997		50.025	0	1	257860	+		41563	27490	28683	28734	46914	46914					0.07373190125213114
LKGIPTVMA	9	Unmodified	_LKGIPTVMA_					0	0	0			REV__ENST00000589450.5_1_18:53745418-53763461:+|nuORF	REV__ENST00000589450.5_1_18:53745418-53763461:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.28033447265625	2	465.278063	928.541574	0.58248	0.00027101	3.7335	0.0017371	4.316	0.0020081	465.2796843838928	87.889	1.2768	87.859	87.495	88.772	-0.029808					82	30	4	0	0	0	0.94809	1	11034	11034		29.15	1.2673	1	1985900	+		41564	35677	28684	28735	46915	46915					0.07444490064870024
LKGISRVT	8	Unmodified	_LKGISRVT_					0	0	0			REV__ENST00000442114.6_2_6:43971070-43971394:+|nuORF	REV__ENST00000442114.6_2_6:43971070-43971394:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2796936035156	2	437.279452	872.544351	-0.75069	-0.00032826	0.71597	0.00031308	-0.034722	-1.5183E-05	437.2796748316289	21.599	0.91922	21.386	21.069	21.988	-0.2128					42	18	4	0	0	0	0.71063	1	658	658		66.429	3.123	1	1348700	+		41565	32555	28685	28736	46916	46916					0.10298081514042678
LKGIVTILI	9	Unmodified	_LKGIVTILI_					0	0	0			REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	REV__SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.28839111328125	2	485.338978	968.663404	0.22445	0.00010893	-0.49364	-0.00023958	-0.2692	-0.00013065	485.33684350329816	18.047	0.19554	17.916	17.811	18.006	-0.13147					5	3	2	0	0	0	0.024436	1	241	241		38.806	3.1879	1	13810	+		41566	26251	28686	28737	46917	46917					0.1778185541890025
LKGIWGLLI	9	Unmodified	_LKGIWGLLI_					0	0	0		nc|ENSG00000151812|A4IF30-2|SLC35F4;ENSG00000151812|ENST00000556826|SLC35F4;nc|ENSG00000151812|A4IF30|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3127136230469	2	506.83132	1011.64809	0.18365	9.3078E-05	-4.386	-0.0022229	-4.2023	-0.0021299	506.8289894965206	64.388	0.48091	64.388	64.097	64.578	0					19	12	2	0	0	0	0.024412	1	7542	7542		40.573	5.3719	1	174160			41567	6232	28687	28738	46918	46918					0.14272988621712557
LKGKKAYTL	9	Unmodified	_LKGKKAYTL_					0	0	0			REV__ENST00000393238.7_1_3:129599158-129599206:-|nuORF	REV__ENST00000393238.7_1_3:129599158-129599206:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2644958496094	2	511.32386	1020.63317	-0.70974	-0.00036291	0.98036	0.00050128	0.27062	0.00013837	511.32402387892097	80.739	2.2114	80.588	80.343	82.554	-0.15169					75	53	3	0	0	0	0.024323	1	10108	10108		35.618	0	1	420150	+		41568	31636	28688	28739	46919	46919					0.12367496753699925
LKGLAIAY	8	Unmodified	_LKGLAIAY_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|38	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.7608337402344	2	424.765646	847.516739	1.4169	0.00060186	-1.1306	-0.00048026	0.28628	0.0001216	424.7651454151134	59.354	0.21643	59.154	59.028	59.245	-0.20016					6	5	2	0	0	0	0.027866	1	6732	6732		52.299	5.5327	1	35562	+		41569	19460	28689	28740	46920	46920					0.08688178253783008
LKGLEVLWRKL	11	Unmodified	_LKGLEVLWRKL_					0	0	0			REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1	REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.61981201171875	3	452.29049	1353.84964	-0.030766	-1.3915E-05	-2.7209	-0.0012307	-2.7517	-0.0012446	452.28940764093795	18.077	0.49695	17.871	17.564	18.061	-0.20669					12	9	2	0	0	0	0.024873	1	223	223		9.6461	5.5632	1	23816	+		41570	36934	28690	28741	46921	46921					0.1868705258737009
LKGLGHIN	8	Unmodified	_LKGLGHIN_					0	0	0		nc|ENSG00000124253|P35558-2|PCK1;ENSG00000124253|ENST00000319441|PCK1	nc|ENSG00000124253|P35558-2|PCK1	nc|ENSG00000124253|P35558-2|PCK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.27130126953125	2	426.25852	850.502486	-0.0019269	-8.2137E-07	2.421	0.001032	2.4191	0.0010312	426.2595010261394	39.602	0.38367	39.602	39.459	39.843	0					15	10	2	0	0	0	0.027866	1	3406	3406		17.365	0	1	119510			41571	4035	28691	28742	46922	46922					0.07125525825517798
LKGLKLVLL	9	Unmodified	_LKGLKLVLL_					0	0	0		ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.83154296875	2	498.862621	995.710688	-1.3061	-0.00065157	-3.0952	-0.0015441	-4.4013	-0.0021956	498.8612210718687	44.5	0.21546	44.281	44.212	44.428	-0.21939					7	5	2	0	0	0	0.024457	1	4155	4155		45.952	10.334	1	34918			41572	8752	28692	28743	46923	46923					0.21266134689892624
LKGLLDTTI	9	Unmodified	_LKGLLDTTI_					0	0	0			REV__nc|ENSG00000161960|P60842-2|EIF4A1	REV__nc|ENSG00000161960|P60842-2|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2980651855469	2	487.30005	972.585547	0.010091	4.9172E-06	0.2598	0.0001266	0.26989	0.00013152	487.3001688400615	58.249	0.78873	58.059	57.871	58.66	-0.19018					37	19	3	0	0	0	0.091713	1	6401	6401		113.41	9.3548	1	1866900	+		41573	36841	28693	28744	46924	46924					0.09815797762848888
LKGLLDTTI	9	Unmodified	_LKGLLDTTI_					0	0	0			REV__nc|ENSG00000161960|P60842-2|EIF4A1	REV__nc|ENSG00000161960|P60842-2|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2991943359375	2	487.30005	972.585547	0.69092	0.00033669	-0.26519	-0.00012923	0.42573	0.00020746	487.29974958494626	58.379	0.85756	58.138	57.918	58.776	-0.24165					42	20	3	0	0	0	0.091713	1	6387	6387		113.41	6.4041	1	1758000	+		41574	36841	28693	28744	46925	46925					0.09815797762848888
LKGLRALGE	9	Unmodified	_LKGLRALGE_					0	0	0		ENSG00000160117|ENST00000404085|ANKLE1	ENSG00000160117|ENST00000404085|ANKLE1	ENSG00000160117|ENST00000404085|ANKLE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.24365234375	2	478.798009	955.581465	0.73847	0.00035358	-1.0257	-0.00049112	-0.28726	-0.00013754	478.79747552347385	40.497	0.66098	40.497	40.247	40.908	0					43	18	3	0	0	0	0.024319	1	3551	3551		56.721	0	1	1063200			41575	6783	28694	28745	46926	46926					0.10189753059785289
LKGLTPLTE	9	Unmodified	_LKGLTPLTE_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;COL14A1|p.P852Hfs*5|1|0.28|ENSG00000187955|chr8:120247683-120247683|C/-|frameshift_variant;ENST00000498051.6_1_8:121226287-121243878:+|nuORF	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2906494140625	2	486.292225	970.569897	-0.49887	-0.00024259	-3.6235	-0.0017621	-4.1224	-0.0020047	486.29060350488385	27.569	2.2712	27.556	27.101	29.372	-0.012983					129	57	5	0	0	0	0.80658	1	1582	1582		38.806	0	1	37106000			41576	9677	28695	28746	46927	46927					0.08343511245800528
LKGMAQGPAPP	11	Unmodified	_LKGMAQGPAPP_					0	0	0			REV__ENST00000257215.9_1_11:61512188-61512554:+|nuORF	REV__ENST00000257215.9_1_11:61512188-61512554:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7743530273438	2	533.789327	1065.5641	-0.15589	-8.3214E-05	2.6148	0.0013957	2.4589	0.0013125	533.7909322809949	47.764	0.33009	47.577	47.457	47.787	-0.18684					15	8	3	0	0	0	0.024759	1	4689	4689		34.173	11.13	1	545550	+		41577	29561	28696	28747	46928	46928					0.03394089462494776
LKGNKPIDI	9	Unmodified	_LKGNKPIDI_					0	0	0			REV__ENSG00000127511|ENST00000248054|SIN3B	REV__ENSG00000127511|ENST00000248054|SIN3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7876281738281	2	499.305667	996.596781	0.84499	0.00042191	-0.74282	-0.00037089	0.10217	5.1013E-05	499.30514391695516	71.129	0.55201	71.129	70.787	71.339	0					27	13	3	0	0	0	0.02435	1	8603	8603		34.173	0	1	343510	+		41578	22935	28697	28748	46929	46929					0.09834619856997051
LKGPAPLI	8	Unmodified	_LKGPAPLI_					0	0	0			REV__ENST00000575826.5_1_17:7530037-7530880:-|nuORF	REV__ENST00000575826.5_1_17:7530037-7530880:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.1700439453125	2	404.768189	807.521825	0.12658	5.1234E-05	0.32083	0.00012986	0.4474	0.00018109	404.76814833163394	76.185	0.54356	75.913	75.622	76.165	-0.27266					22	13	2	0	0	0	0.027866	1	9037	9037		18.324	0	1	107580	+		41579	24096	28698	28749	46930	46930					0.11036482116412571
LKGPCSERH	9	Unmodified	_LKGPCSERH_					0	0	0		ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1	ENSG00000132952|ENST00000255304|USPL1	ENSG00000132952|ENST00000255304|USPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2984008789062	2	513.761101	1025.50765	-1.0302	-0.00052929	3.8462	0.001976	2.816	0.0014467	514.2634154373036	35.181	0.44212	35.159	34.866	35.308	-0.021767					13	11	2	0	0	0	0.024427	1	2629	2629		34.173	11.13	1	54700			41580	4665	28699	28750	46931	46931					-0.004085383741994519
LKGPRHPRMG	10	Unmodified	_LKGPRHPRMG_					0	0	0			REV__ENST00000467155.6_1_17:46683509-46683713:+|nuORF	REV__ENST00000467155.6_1_17:46683509-46683713:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.3109741210938	2	574.827109	1147.63967	-0.63188	-0.00036322	-0.80279	-0.00046147	-1.4347	-0.00082469	574.8265897855998	42.742	0.49755	42.516	42.336	42.833	-0.22597					17	12	2	0	0	0	0.03519	1	3852	3852		27.882	0	1	154550	+		41581	33064	28700	28751	46932	46932					0.07175111433411985
LKGQLRPL	8	Unmodified	_LKGQLRPL_					0	0	0			REV__ENSG00000198130|ENST00000359678|HIBCH	REV__ENSG00000198130|ENST00000359678|HIBCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	462.803094	923.591636	-0.45792	-0.00021193	1.6816	0.00077826	1.2237	0.00056633	462.8036446669929	23.348	0.31743	23.287	23.069	23.386	-0.060862					12	7	2	0	0	0	0.027866	1	878	878		65.803	33.848	1	74155	+		41582	28387	28701	28752	46933	46933					0.12678360785037057
LKGREKPE	8	Unmodified	_LKGREKPE_					0	0	0			REV__ENSG00000160194|ENST00000354250|NDUFV3	REV__ENSG00000160194|ENST00000354250|NDUFV3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.24365234375	2	478.779816	955.545079	0.78236	0.00037458	-1.0797	-0.00051695	-0.29737	-0.00014237	478.77922679330476	40.248	0.81377	40.248	39.951	40.764	0					42	22	3	0	0	0	0.027866	1	3551	3551		53.351	0	1	2664000	+		41583	25293	28702	28753	46934	46934					0.0655287616308442
LKGRLAGLDV	10	Unmodified	_LKGRLAGLDV_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2737426757812	2	521.324391	1040.63423	-0.6141	-0.00032014	3.8356	0.0019996	3.2215	0.0016795	521.3261684897267	61.293	0.41494	61.116	60.874	61.289	-0.1761					14	9	2	0	0	0	0.03519	1	6860	6860		42.864	3.6114	1	107390	+		41584	27209	28703	28754	46935	46935					0.11553711122587629
LKGRLLKT	8	Unmodified	_LKGRLLKT_					0	0	0		ENST00000356554.7_1_1:118065613-118065685:+|nuORF	ENST00000356554.7_1_1:118065613-118065685:+|nuORF	ENST00000356554.7_1_1:118065613-118065685:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.7950134277344	2	464.818744	927.622936	0.0084376	3.9219E-06	2.3489	0.0010918	2.3573	0.0010957	464.8201262186058	33.993	0.24359	33.769	33.64	33.883	-0.22412					8	5	2	0	0	0	0.027866	1	2454	2454		3.6843	0	1	43579			41585	12672	28704	28755	46936	46936					0.15622933819133777
LKGRQLLVL	9	Unmodified	_LKGRQLLVL_					0	0	0		nc|ENSG00000168904|Q86X40-2|LRRC28	nc|ENSG00000168904|Q86X40-2|LRRC28	nc|ENSG00000168904|Q86X40-2|LRRC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8186645507812	2	520.352951	1038.69135	0.36059	0.00018763	-1.8472	-0.00096119	-1.4866	-0.00077356	520.351777623944	71.7	0.26381	71.411	71.273	71.537	-0.28858					9	6	2	0	0	0	0.024354	1	8647	8647		38.806	0	1	52788			41586	18497	28705	28756	46937	46937					0.17355178398975113
LKGSVWTQ	8	Unmodified	_LKGSVWTQ_					0	0	0		ENST00000562755.5_3_16:67562263-67562392:+|nuORF	ENST00000562755.5_3_16:67562263-67562392:+|nuORF	ENST00000562755.5_3_16:67562263-67562392:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.22723388671875	2	459.75581	917.497067	-0.096379	-4.4311E-05	-3.2933	-0.0015141	-3.3897	-0.0015584	459.75409393479856	27.025	0.71912	27.025	26.825	27.544	0					27	18	2	0	0	0	0.027866	1	1478	1478		15.642	5.3766	1	265580			41587	16848	28706	28757	46938	46938					0.03501802243044949
LKGSVWTQ	8	Unmodified	_LKGSVWTQ_					0	0	0		ENST00000562755.5_3_16:67562263-67562392:+|nuORF	ENST00000562755.5_3_16:67562263-67562392:+|nuORF	ENST00000562755.5_3_16:67562263-67562392:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	459.75581	917.497067	-0.3393	-0.000156	-4.1616	-0.0019133	-4.5009	-0.0020693	459.75378058948974	26.738	0.45295	26.819	26.543	26.996	0.081293	-0.13014	-0.00033814	NaN	18.262	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247260			41588	16848	28706	28757							0.03501802243044949
LKGTKLSLL	9	Unmodified	_LKGTKLSLL_					0	0	0			REV__ENSG00000273079|ENST00000609686|GRIN2B	REV__ENSG00000273079|ENST00000609686|GRIN2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7843017578125	2	486.826235	971.637917	-0.16311	-7.9405E-05	-0.37786	-0.00018395	-0.54097	-0.00026336	486.8258845126704	100.95	0.17001	100.95	100.85	101.02	-0.0054474					5	3	2	0	0	0	0.024541	1	12850	12850		19.104	3.4617	1	57341	+		41589	29173	28707	28758	46939	46939					0.15096380896466144
LKGTNGPNVK	10	Unmodified	_LKGTNGPNVK_					0	0	0			REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2992553710938	2	514.298373	1026.58219	1.7663	0.0009084	-2.3573	-0.0012124	-0.59104	-0.00030397	514.297018513231	23.42	1.2994	23.229	22.804	24.104	-0.19117					46	29	3	0	0	0	0.03519	1	865	865		29.17	0	1	513450	+		41590	25725	28708	28759	46940	46940					0.0699654770885445
LKGVILLI	8	Unmodified	_LKGVILLI_					0	0	0		EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	EIF4G2|p.K722Tfs*29|1|0.25|ENSG00000110321|chr11:10799709-10799713|CCTTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7482604980469	2	434.815139	867.615725	-0.41133	-0.00017885	1.1013	0.00047886	0.68996	0.0003	434.81540888011233	65.548	0.33773	65.275	65.126	65.464	-0.27283					12	9	2	0	0	0	0.027866	1	7757	7757		33.516	5.2613	1	118660			41591	695	28709	28760	46941	46941					0.1766220121870674
LKGVTSVL	8	Unmodified	_LKGVTSVL_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.5826416015625	2	408.763104	815.511654	0.31708	0.00012961	1.9346	0.00079078	2.2516	0.00092039	408.76375293664705	35.35	0.78171	35.35	34.826	35.608	0					25	20	2	0	0	0	0.027866	1	2684	2684		40.573	0	1	67548	+		41592	22104	28710	28761	46942	46942					0.09651874391192905
LKGYIKFKPM	10	Unmodified	_LKGYIKFKPM_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.7422790527344	3	408.910622	1223.71004	1.7257	0.00070567	3.1267	0.0012785	4.8524	0.0019842	408.9117745250877	55.483	1.4444	55.483	54.944	56.388	0					77	40	3	0	0	0	0.03519	1	6127	6127		7.3997	0	1	969590	+		41593	28369	28711	28762	46943	46943					0.10712971978523456
LKHASDCW	8	Unmodified	_LKHASDCW_					0	0	0		nc|ENSG00000167483|Q86XR2-2|NIBAN3	nc|ENSG00000167483|Q86XR2-2|NIBAN3	nc|ENSG00000167483|Q86XR2-2|NIBAN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	480.22382	958.433086	-0.64824	-0.0003113	1.5523	0.00074544	0.90404	0.00043414	480.22452307748256	28.622	0.72019	28.453	28.007	28.727	-0.16897					28	16	3	0	0	0	0.027866	1	1693	1693		31.955	18.996	1	233460			41594	18479	28712	28763	46944	46944					-0.04779301185556051
LKHFPVDL	8	Unmodified	_LKHFPVDL_					0	0	0		nc|ENSG00000161944|P07307-3|ASGR2;nc|ENSG00000161944|P07307-2|ASGR2;ENSG00000161944|ENST00000691900|ASGR2;nc|ENSG00000161944|P07307|ASGR2	nc|ENSG00000161944|P07307-3|ASGR2	nc|ENSG00000161944|P07307-3|ASGR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2535400390625	2	484.781828	967.549102	-0.58657	-0.00028436	1.0093	0.00048927	0.42268	0.00020491	484.7814555495868	53.443	1.5732	53.296	52.447	54.02	-0.14724					52	42	2	0	0	0	0.027866	1	5624	5624		29.15	0	1	418030			41595	6902	28713	28764	46945	46945					0.06402965656786819
LKHGKKTGEL	10	Unmodified	_LKHGKKTGEL_					0	0	0			REV__ENSG00000113140|ENST00000231061|SPARC	REV__ENSG00000113140|ENST00000231061|SPARC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.8367919921875	2	555.835123	1109.65569	0.3919	0.00021783	3.6852	0.0020484	4.0771	0.0022662	556.3390798342774	106.45	0.37006	106.29	106.09	106.46	-0.16132					30	17	2	0	0	0	1.0616	1	13228	13228		37.812	2.6108	1	132790	+		41596	22043	28714	28765	46946	46946					0.10525096151332036
LKHLTCIVE	9	Unmodified	_LKHLTCIVE_					0	0	0			REV__ENSG00000164776|ENST00000297373|PHKG1	REV__ENSG00000164776|ENST00000297373|PHKG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2738037109375	2	528.299527	1054.5845	-0.68867	-0.00036382	-4.1335	-0.0021837	-4.8222	-0.0025476	528.8001149366002	92.78	0.34373	92.774	92.602	92.946	-0.0062561					11	7	2	0	0	0	0.023837	1	11724	11724		74.255	15.473	1	52416	+		41597	25801	28715	28766	46947	46947					0.05939260122295309
LKHNEAYTW	9	Unmodified	_LKHNEAYTW_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.7527465820312	2	581.288005	1160.56146	-0.23011	-0.00013376	-0.63357	-0.00036829	-0.86368	-0.00050205	581.2873801008129	70.297	0.27558	70.083	69.937	70.213	-0.21425					13	6	3	0	0	0	0.024374	1	8190	8190		49.442	0	1	206850			41598	4442	28716	28767	46948	46948					-0.012400426708154555
LKHSKAFV	8	Unmodified	_LKHSKAFV_					0	0	0		ENSG00000197921|ENST00000378453|HES5	ENSG00000197921|ENST00000378453|HES5	ENSG00000197921|ENST00000378453|HES5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2801818847656	2	465.281995	928.549437	-0.188	-8.7473E-05	-3.7879	-0.0017625	-3.9759	-0.0018499	465.2799934559697	88.073	1.1725	87.9	87.497	88.67	-0.17254					86	28	5	0	0	0	1.0572	1	10720	10720		28.254	6.5519	1	1783100			41599	10067	28717	28768	46949	46949					0.08230385376657523
LKHVPSAA	8	Unmodified	_LKHVPSAA_					0	0	0		ENST00000368374.5_1_1:155187792-155194724:-|nuORF	ENST00000368374.5_1_1:155187792-155194724:-|nuORF	ENST00000368374.5_1_1:155187792-155194724:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.2137451171875	2	411.745245	821.475937	-0.88281	-0.00036349	0.24608	0.00010132	-0.63673	-0.00026217	411.74522755649934	44.561	0.4726	44.35	44.082	44.554	-0.21109					20	12	2	0	0	0	0.027866	1	4171	4171		29.15	10.825	1	371170			41600	12890	28718	28769	46950	46950					0.058058369341779326
LKIAFVIH	8	Unmodified	_LKIAFVIH_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7878723144531	2	470.802563	939.590573	0.34028	0.00016021	2.9449	0.0013864	3.2851	0.0015467	470.80373518707444	23.723	0.30874	23.8	23.647	23.956	0.076241					11	6	3	0	0	0	0.027866	1	928	928		12.207	0	1	81201	+		41601	19378	28719	28770	46951	46951					0.11836146416135307
LKIASHDSF	9	Unmodified	_LKIASHDSF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2884216308594	2	509.271824	1016.5291	-0.024344	-1.2398E-05	-0.25662	-0.00013069	-0.28097	-0.00014309	509.773067274014	52.825	0.44187	52.698	52.432	52.874	-0.12706					19	10	2	0	0	0	0.024427	1	5497	5497		34.173	8.5985	1	151660	+		41602	36265	28720	28771	46952	46952					0.021491699261900976
LKIASHDSF	9	Unmodified	_LKIASHDSF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.271824	1016.5291	-0.573	-0.00029181	0.52904	0.00026942	-0.043965	-2.239E-05	509.27199891884646	52.817	0.75372	52.817	52.513	53.267	0	0.077533	0.0003985	NaN	34.173	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1223100	+		41603	36265	28720	28771							0.021491699261900976
LKIASHDSF	9	Unmodified	_LKIASHDSF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.271824	1016.5291	-0.086385	-4.3993E-05	0.10384	5.2884E-05	0.017457	8.8904E-06	509.2718252849129	52.859	0.61251	52.712	52.447	53.06	-0.14724	-0.027158	-3.4584E-05	NaN	34.173	34	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1334700	+		41604	36265	28720	28771							0.021491699261900976
LKIASHDSF	9	Unmodified	_LKIASHDSF_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|151|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.271824	1016.5291	0.061785	3.1465E-05	-0.058962	-3.0028E-05	0.0028231	1.4377E-06	509.2717232704306	52.651	0.729	52.742	52.321	53.05	0.091942	0.0034898	-0.00020041	NaN	34.173	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1471500	+		41605	36265	28720	28771							0.021491699261900976
LKICGDFSIY	10	Unmodified	_LKICGDFSIY_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|75|1|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|75|1|anti-sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|75|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7518920898438	2	579.796817	1157.57908	-0.059624	-3.457E-05	2.7872	0.001616	2.7276	0.0015815	579.7987416159157	74.859	0.33776	74.676	74.513	74.851	-0.18279					9	7	2	0	0	0	0.03519	1	8806	8806		56.434	6.9922	1	27210			41606	17836	28721	28772	46953	46953					0.006595365398425201
LKIDKTDLDPQ	11	Unmodified	_LKIDKTDLDPQ_					0	0	0			REV__ENST00000551506.1_1_12:46623410-46662443:-|nuORF	REV__ENST00000551506.1_1_12:46623410-46662443:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.73797607421875	3	429.23812	1284.69253	-0.5805	-0.00024917	1.0976	0.00047111	0.51706	0.00022194	429.2379286344261	24.387	0.57396	24.387	24.123	24.697	0					16	12	2	0	0	0	0.024742	1	1091	1091		32.034	0.96598	1	29948	+		41607	34890	28722	28773	46954	46954					0.06157303186569152
LKIDKTDLDPQ	11	Unmodified	_LKIDKTDLDPQ_					0	0	0			REV__ENST00000551506.1_1_12:46623410-46662443:-|nuORF	REV__ENST00000551506.1_1_12:46623410-46662443:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	429.23812	1284.69253	-1.035	-0.00044427	2.7932	0.001199	1.7582	0.00075468	429.23935891338687	24.435	0.70881	24.388	23.869	24.578	-0.047148	0.00057443	0.00082113	NaN	32.034	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61060	+		41608	34890	28722	28773							0.06157303186569152
LKIDQQGM	8	Unmodified	_LKIDQQGM_					0	0	0		ENST00000344683.9_2_8:6303062-6312696:+|nuORF	ENST00000344683.9_2_8:6303062-6312696:+|nuORF	ENST00000344683.9_2_8:6303062-6312696:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.7817077636719	2	466.747127	931.479702	-0.37053	-0.00017294	-2.4678	-0.0011518	-2.8383	-0.0013248	466.74580191793757	29.92	0.84764	29.676	29.274	30.122	-0.24415					29	19	2	0	0	0	0.027866	1	1814	1814		51.335	5.3835	1	93325			41609	12554	28723	28774	46955	46955					0.01122138645735049
LKIDRTEPK	9	Unmodified	_LKIDRTEPK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.3265991210938	2	550.327131	1098.63971	0.55563	0.00030578	-0.31295	-0.00017222	0.24269	0.00013356	550.3273856834469	99.019	1.1026	98.884	98.412	99.514	-0.13526					62	26	3	0	0	0	0.77768	1	12281	12281		40.778	5.6261	1	184890			41610	3207	28724	28775	46956	46956					0.09433389914420331
LKIEARNQA	9	Unmodified	_LKIEARNQA_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-5|QKI	REV__nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2796630859375	2	521.803823	1041.59309	0.65629	0.00034245	2.3796	0.0012417	3.0359	0.0015841	521.8052397958552	59.554	0.73074	59.354	59.099	59.83	-0.20016					60	19	4	0	0	0	0.024447	1	6844	6844		49.442	24.922	1	1589700	+		41611	22009	28725	28776	46957	46957					0.073959500831279
LKIEARNQA	9	Unmodified	_LKIEARNQA_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-5|QKI	REV__nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.803823	1041.59309	0.82683	0.00043144	3.734	0.0019484	4.5609	0.0023799	521.8056400654921	59.639	0.58246	59.463	59.158	59.741	-0.1761	0.046782	0.00067046	NaN	32.812	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232580	+		41612	22009	28725	28776							0.073959500831279
LKIEARNQA	9	Unmodified	_LKIEARNQA_					0	0	0			REV__nc|ENSG00000112531|Q96PU8-5|QKI	REV__nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.803823	1041.59309	0.14711	7.6764E-05	4.1648	0.0021732	4.3119	0.0022499	521.8059575444227	59.854	0.57921	59.605	59.294	59.873	-0.24842	0.18864	0.0011199	NaN	32.812	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209080	+		41613	22009	28725	28776							0.073959500831279
LKIERKKLP	9	Unmodified	_LKIERKKLP_					0	0	0			REV__RSF1|p.K1002Nfs*18|1|0.29|ENSG00000048649|chr11:77683769-77683769|T/-|frameshift_variant	REV__RSF1|p.K1002Nfs*18|1|0.29|ENSG00000048649|chr11:77683769-77683769|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.79345703125	2	562.879333	1123.74411	-0.40045	-0.00022541	0.36383	0.00020479	-0.036617	-2.0611E-05	562.8794427578745	54.881	0.52448	54.731	54.541	55.065	-0.15036					29	14	3	0	0	0	0.024511	1	6052	6052		32.812	3.6424	1	451730	+		41614	20140	28726	28777	46958	46958					0.18719136461777452
LKIERKKLP	9	Unmodified	_LKIERKKLP_					0	0	0			REV__RSF1|p.K1002Nfs*18|1|0.29|ENSG00000048649|chr11:77683769-77683769|T/-|frameshift_variant	REV__RSF1|p.K1002Nfs*18|1|0.29|ENSG00000048649|chr11:77683769-77683769|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.7935791015625	2	562.879333	1123.74411	-0.21232	-0.00011951	0.12882	7.2513E-05	-0.083492	-4.6996E-05	562.8792073735932	54.617	0.55783	54.715	54.458	55.016	0.098015					31	15	3	0	0	0	0.024466	1	5939	5939		31.53	24.794	1	447330	+		41615	20140	28726	28777	46959	46959					0.18719136461777452
LKIFHCQVT	9	Unmodified	_LKIFHCQVT_					0	0	0		ENSG00000174946|ENST00000309180|GPR171	ENSG00000174946|ENST00000309180|GPR171	ENSG00000174946|ENST00000309180|GPR171	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3201293945312	2	544.799694	1087.58484	-0.95159	-0.00051843	-1.692	-0.0009218	-2.6436	-0.0014402	544.7985268976013	72.965	1.1844	72.965	72.292	73.477	0					79	29	4	0	0	0	0.020546	1	8848	8848		84.916	5.4645	1	1472500			41616	8513	28727	28778	46960	46960					0.04454679842137921
LKIFRVVD	8	Unmodified	_LKIFRVVD_					0	0	0			REV__ENSG00000198879|ENST00000397167|SFMBT2	REV__ENSG00000198879|ENST00000397167|SFMBT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2973937988281	2	495.310752	988.606951	0.80962	0.00040101	2.2568	0.0011178	3.0665	0.0015188	495.3121157172433	54.245	0.13599	54.343	54.225	54.361	0.098015					6	3	2	0	0	0	0.027866	1	5842	5842		3.6843	0	1	259550	+		41617	28505	28728	28779	46961	46961					0.11219227582228086
LKIFSYLLE	9	Unmodified	_LKIFSYLLE_					0	0	0		nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;nc|ENSG00000138081|Q86XK2-4|FBXO11	nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11	nc|ENSG00000138081|Q86XK2-3|FBXO11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.787841796875	2	563.33135	1124.64815	-0.46719	-0.00026319	-2.7961	-0.0015751	-3.2633	-0.0018383	563.3298618028101	30.185	0.42623	29.941	29.737	30.163	-0.24415					14	9	2	0	0	0	0.024418	1	1916	1916		45.972	7.1661	1	65693			41618	5203;18318	28729	28780	46962	46962					0.09080943831054356
LKIFSYLLE	9	Unmodified	_LKIFSYLLE_					0	0	0		nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.T906Lfs*15|1|0.23|ENSG00000138081|chr2:47808187-47808188|-/GG|frameshift_variant;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;FBXO11|p.C390Mfs*3|1|0.35|ENSG00000138081|chr2:47832664-47832665|-/T|frameshift_variant;nc|ENSG00000138081|Q86XK2-4|FBXO11	nc|ENSG00000138081|Q86XK2-3|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11	nc|ENSG00000138081|Q86XK2-3|FBXO11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	563.33135	1124.64815	-0.26773	-0.00015082	-2.6208	-0.0014764	-2.8886	-0.0016272	563.3297827662233	30.18	0.46974	30.031	29.75	30.219	-0.14952	0.068533	-0.00014711	NaN	45.972	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90320			41619	5203;18318	28729	28780							0.09080943831054356
LKIGPKANLL	10	Unmodified	_LKIGPKANLL_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7972412109375	2	533.852784	1065.69102	-0.91528	-0.00048863	0.29367	0.00015678	-0.62161	-0.00033185	533.8530392998173	55.172	0.37684	55.026	54.911	55.288	-0.14609					17	10	2	0	0	0	0.03519	1	5929	5929		20.947	12.125	1	165880			41620	742	28730	28781	46963	46963					0.1607975867912046
LKIHLLAV	8	Unmodified	_LKIHLLAV_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.2815856933594	2	453.810388	905.606223	-0.099145	-4.4993E-05	-0.12549	-5.6948E-05	-0.22463	-0.00010194	453.8102067956281	49.187	0.38927	49.034	48.829	49.218	-0.15277					21	10	3	0	0	0	0.027866	1	5066	5066		8.2313	0	1	191100			41621	8729	28731	28782	46964	46964					0.14964432933174976
LKIIPIPRCGT	11	Unmodified	_LKIIPIPRCGT_					0	0	0			REV__nc|ENSG00000124493|Q14833-5|GRM4	REV__nc|ENSG00000124493|Q14833-5|GRM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8715209960938	2	605.870651	1209.72675	-0.27427	-0.00016617	2.6122	0.0015827	2.3379	0.0014165	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	1.0483	1	12204	12204		25.574	1.0549	1	990980	+		41622	36631	28732	28783	46965	46965					0.13027472864473566
LKIKYNPFA	9	Unmodified	_LKIKYNPFA_					0	0	0		ENSG00000143178|ENST00000367821|TBX19;nc|ENSG00000164458|O15178-2|TBXT;nc|ENSG00000164458|O15178|TBXT;ENSG00000164458|ENST00000366876|TBXT	ENSG00000143178|ENST00000367821|TBX19	ENSG00000143178|ENST00000367821|TBX19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3035888671875	2	547.32386	1092.63317	-0.78071	-0.0004273	3.8974	0.0021331	3.1167	0.0017058	547.3264824433057	37.083	0.34531	37.115	36.957	37.303	0.032269					11	8	2	0	0	0	0.024506	1	2963	2963		30.504	12.179	1	112860			41623	5617	28733	28784	46966	46966					0.0905549675369457
LKILFFKN	8	Unmodified	_LKILFFKN_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|281|2|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|339|3|anti-sense;chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|50;chr5:90929313-90965415|334|14.64|0.23|5.99|+|0|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|88;chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|102;chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|75;chr15:53523322-53540662|353|34.83|0.17|7.69|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|63;chr1:89418355-89420191|233|12.99|0.01|10.41|+|0|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|107;chr1:59653519-59660219|372|15.17|0.05|8.23|+|2|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|89;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|348|3|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|281|2|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|281|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.84466552734375	2	511.823495	1021.63244	-0.44318	-0.00022683	-4.0135	-0.0020542	-4.4567	-0.002281	511.8215593305299	76.149	0.42574	75.877	75.699	76.125	-0.27266					15	10	2	0	0	0	0.027866	1	8995	8995		19.36	4.6959	1	66656			41624	297	28734	28785	46967	46967					0.12248702104648146
LKILGKSL	8	Unmodified	_LKILGKSL_					0	0	0			REV__ENST00000392902.2_1_9:125791658-125791787:-|nuORF	REV__ENST00000392902.2_1_9:125791658-125791787:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8810729980469	2	436.302396	870.590239	-0.019761	-8.6216E-06	1.1506	0.00050203	1.1309	0.0004934	436.30266916005223	39.979	0.88395	39.749	39.313	40.197	-0.23021					50	22	3	0	0	0	0.027866	1	3351	3351		24.203	0	1	1456500	+		41625	22390	28735	28786	46968	46968					0.14976726696284004
LKILKGKKRE	10	Unmodified	_LKILKGKKRE_					0	0	0		ENST00000494493.1_1_X:69675734-69675893:+|nuORF	ENST00000494493.1_1_X:69675734-69675893:+|nuORF	ENST00000494493.1_1_X:69675734-69675893:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9228820800781	3	404.943202	1211.80778	0.52493	0.00021257	-3.6619	-0.0014829	-3.137	-0.0012703	404.9414036629093	26.168	0.31288	26	25.84	26.153	-0.16816					16	9	2	0	0	0	0.03519	1	1324	1324		14.694	0	1	166540			41626	15530	28736	28787	46969	46969					0.21034496898869293
LKILPDVNS	9	Unmodified	_LKILPDVNS_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.76666259765625	2	499.797675	997.580796	-0.35349	-0.00017667	-2.4837	-0.0012413	-2.8372	-0.001418	499.79625614488515	41.945	0.21183	41.813	41.678	41.889	-0.13219					6	5	2	0	0	0	0.024447	1	3796	3796		40.778	12.896	1	34889			41627	1082	28737	28788	46970	46970					0.08190913620080664
LKILPSYM	8	Unmodified	_LKILPSYM_					0	0	0		ENSG00000154240|ENST00000535342|CEP112;ENST00000580624.1_1_17:64172908-64188196:-|nuORF	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2459411621094	2	482.780439	963.546325	-1.1472	-0.00055383	4.1062	0.0019824	2.959	0.0014286	482.78191449529015	39.078	0.35794	39.102	38.919	39.277	0.023727					14	9	2	0	0	0	0.027866	1	3264	3264		13.775	0	1	109230			41628	6393	28738	28789	46971	46971					0.06309374207626206
LKILTSLAEV	10	Unmodified	_LKILTSLAEV_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2575073242188	2	543.842082	1085.66961	-0.43648	-0.00023738	0.69929	0.0003803	0.26281	0.00014292	543.8422063259695	47.282	0.40608	47.185	47.046	47.452	-0.096649					14	10	2	0	0	0	0.03519	1	4621	4621		16.473	9.2798	1	147420			41629	1787	28739	28790	46972	46972					0.13020328859738584
LKINLREV	8	Unmodified	_LKINLREV_					0	0	0		ENSG00000102781|ENST00000380615|KATNAL1	ENSG00000102781|ENST00000380615|KATNAL1	ENSG00000102781|ENST00000380615|KATNAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2582702636719	2	492.813659	983.612765	-0.12683	-6.2505E-05	-0.31916	-0.00015729	-0.44599	-0.00021979	492.8132563783311	41.797	0.39443	41.82	41.564	41.958	0.023006					18	10	2	0	0	0	0.027866	1	3716	3716		44.117	9.9443	1	96210			41630	2427	28740	28791	46973	46973					0.12030326093895383
LKIPPGLLD	9	Unmodified	_LKIPPGLLD_					0	0	0			REV__ENST00000609118.1_1_1:111505930-111506428:+|nuORF	REV__ENST00000609118.1_1_1:111505930-111506428:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2378234863281	2	483.305136	964.595718	-0.25979	-0.00012556	-3.7838	-0.0018288	-4.0436	-0.0019543	483.30310141143013	40.715	0.18865	40.579	40.524	40.712	-0.13553					5	4	2	0	0	0	0.024506	1	3562	3562		23.042	4.7181	1	47546	+		41631	35978	28741	28792	46974	46974					0.11200405488091292
LKISTIRSL	9	Unmodified	_LKISTIRSL_					0	0	0		ENST00000524747.1_1_11:31451062-31451257:+|nuORF;ENST00000395949.2_1_11:31451062-31451945:+|nuORF	ENST00000524747.1_1_11:31451062-31451257:+|nuORF	ENST00000524747.1_1_11:31451062-31451257:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2821044921875	2	515.834591	1029.65463	-0.54656	-0.00028194	-2.9012	-0.0014966	-3.4478	-0.0017785	515.8319935261035	65.369	0.27281	65.407	65.321	65.594	0.037384					9	7	2	0	0	0	0.024484	1	7685	7685		37.812	6.2817	1	175830			41632	13537	28742	28793	46975	46975					0.14098881782433637
LKITGSLK	8	Unmodified	_LKITGSLK_					0	0	0		ENST00000301923.13_2_22:40731254-40731416:+|nuORF	ENST00000301923.13_2_22:40731254-40731416:+|nuORF	ENST00000301923.13_2_22:40731254-40731416:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.265869140625	2	430.284203	858.553853	-0.46277	-0.00019912	-4.4191	-0.0019015	-4.8818	-0.0021006	430.2824047926239	48.568	0.20999	48.415	48.295	48.505	-0.15277					8	5	2	0	0	0	0.027866	1	4933	4933		34.173	5.023	1	219350			41633	11943	28743	28794	46976	46976					0.1189184979956508
LKITSTTT	8	Unmodified	_LKITSTTT_					0	0	0			REV__DCAF6|p.E561K|1|0.2|ENSG00000143164|chr1:168044653-168044653|G/A|missense_variant	REV__DCAF6|p.E561K|1|0.2|ENSG00000143164|chr1:168044653-168044653|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.8884582519531	2	432.755475	863.496398	-0.21224	-9.1849E-05	2.186	0.000946	1.9738	0.00085415	432.7562854001192	22.103	0.52381	21.916	21.617	22.141	-0.18672					16	10	2	0	0	0	0.027866	1	725	725		10.866	0	1	94517	+		41634	19653	28744	28795	46977	46977					0.059189628033209374
LKIVETICV	9	Unmodified	_LKIVETICV_					0	0	0			REV__ENSG00000164414|ENST00000369552|SLC35A1	REV__ENSG00000164414|ENST00000369552|SLC35A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.3061828613281	2	509.304278	1016.594	0.26627	0.00013561	3.1542	0.0016064	3.4204	0.001742	509.30576152941245	91.807	1.4459	91.816	91.442	92.888	0.0094147					101	34	5	0	0	0	0.96322	1	11532	11532		27.882	0	1	3719700	+		41635	25752	28745	28796	46978	46978					0.08637028407838443
LKIYEYHV	8	Unmodified	_LKIYEYHV_					0	0	0		ENST00000505585.5_2_1:84810953-84815454:+|nuORF;nc|ENSG00000203943|Q5VXD3-3|SAMD13;ENST00000506295.1_2_1:84810518-84815454:+|nuORF;ENSG00000203943|ENST00000394834|SAMD13;nc|ENSG00000203943|Q5VXD3-2|SAMD13;nc|ENSG00000203943|Q5VXD3|SAMD13	ENST00000505585.5_2_1:84810953-84815454:+|nuORF	ENST00000505585.5_2_1:84810953-84815454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2984008789062	2	532.792392	1063.57023	-0.62497	-0.00033298	-3.3559	-0.001788	-3.9809	-0.002121	532.7913475828107	52.195	0.97242	52.287	52.04	53.013	0.091938					60	24	3	0	0	0	0.027866	1	5485	5485		60.294	0	1	1210900			41636	10289	28746	28797	46979	46979					0.040989309656424666
LKKAAYSW	8	Unmodified	_LKKAAYSW_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.7901306152344	2	483.774003	965.533452	-0.7791	-0.00037691	-2.9813	-0.0014423	-3.7604	-0.0018192	483.7722331920168	37.227	0.507	37.008	36.607	37.114	-0.2195					21	12	2	0	0	0	0.027866	1	2917	2917		31.955	8.9124	1	122610			41637	7759	28747	28798	46980	46980					0.049306791397384586
LKKAGRQP	8	Unmodified	_LKKAGRQP_					0	0	0		ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2607116699219	2	449.285069	896.555585	-0.011997	-5.39E-06	-0.18393	-8.2639E-05	-0.19593	-8.8029E-05	449.2849376532538	31.508	0.45101	31.266	30.995	31.446	-0.24109					17	11	2	0	0	0	0.027866	1	2078	2078		26.796	0	1	122540			41638	3225	28748	28799	46981	46981					0.10316903608179473
LKKAHGLLAE	10	Unmodified	_LKKAHGLLAE_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7926025390625	2	540.332216	1078.64988	-1.038	-0.00056085	-0.096694	-5.2247E-05	-1.1347	-0.0006131	540.3321992646671	78.23	0.36678	78.246	77.989	78.356	0.015907					10	8	2	0	0	0	0.03519	1	9586	9586		26.693	3.6504	1	82536			41639	5130	28749	28800	46982	46982					0.11369997639667417
LKKAHRSL	8	Unmodified	_LKKAHRSL_					0	0	0			REV__nc|ENSG00000103723|Q13367|AP3B2	REV__nc|ENSG00000103723|Q13367|AP3B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7590026855469	2	476.806168	951.597784	0.44841	0.00021381	2.9892	0.0014252	3.4376	0.0016391	476.8071056463486	101.01	0.53914	100.89	100.65	101.19	-0.12576					17	13	2	0	0	0	0.027866	1	12523	12523		18.324	6.1176	1	72985	+		41640	21404	28750	28801	46983	46983					0.12004879016558334
LKKAHRTE	8	Unmodified	_LKKAHRTE_					0	0	0		nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38	nc|ENSG00000211455|Q9Y2H1-2|STK38L	nc|ENSG00000211455|Q9Y2H1-2|STK38L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2735900878906	2	491.793258	981.571963	-1.3739	-0.00067567	-0.082351	-4.0499E-05	-1.4562	-0.00071616	491.7931972283585	38.023	0.6298	38.05	37.634	38.264	0.027279					25	17	2	0	0	0	0.027866	1	3128	3128		11.511	0	1	261100			41641	3169	28751	28802	46984	46984					0.08043984774258206
LKKAKYVY	8	Unmodified	_LKKAKYVY_					0	0	0			REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	REV__ENST00000329092.12_1_3:197677808-197679492:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3127136230469	2	506.813128	1011.6117	0.04966	2.5168E-05	-4.3653	-0.0022124	-4.3157	-0.0021872	507.3122594373052	64.291	0.88565	64.291	64.097	64.983	0					34	23	3	0	0	0	0.027866	1	7542	7542		33.516	6.8227	1	170460	+		41642	30442	28752	28803	46985	46985					0.10636111724977582
LKKARKSI	8	Unmodified	_LKKARKSI_					0	0	0			REV__nc|ENSG00000012171|Q13214-2|SEMA3B	REV__nc|ENSG00000012171|Q13214-2|SEMA3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.28790283203125	2	472.324194	942.633835	0.60316	0.00028489	-2.5649	-0.0012115	-1.9617	-0.00092657	472.32378289695185	94.287	0.52579	94.287	94.047	94.573	0					21	12	3	0	0	0	0.027866	1	12014	12014		29.15	6.1071	1	101450	+		41643	19942	28753	28804	46986	46986					0.16022336193407227
LKKARKSI	8	Unmodified	_LKKARKSI_					0	0	0			REV__nc|ENSG00000012171|Q13214-2|SEMA3B	REV__nc|ENSG00000012171|Q13214-2|SEMA3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2876281738281	2	472.324194	942.633835	-0.33677	-0.00015906	-3.403	-0.0016073	-3.7397	-0.0017664	472.3218853545892	94.451	0.45724	94.303	94.128	94.585	-0.14771					18	10	3	0	0	0	0.027866	1	11622	11622		10.866	0	1	90747	+		41644	19942	28753	28804	46987	46987					0.16022336193407227
LKKATLRES	9	Unmodified	_LKKATLRES_					0	0	0			REV__DHX29|p.G117E|1|0.24|ENSG00000067248|chr5:55297310-55297310|C/T|missense_variant	REV__DHX29|p.G117E|1|0.24|ENSG00000067248|chr5:55297310-55297310|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2796020507812	2	523.321848	1044.62914	-0.66235	-0.00034662	-2.8241	-0.0014779	-3.4864	-0.0018245	523.3200430084067	38.75	0.38382	38.651	38.318	38.702	-0.098755					15	9	2	0	0	0	0.024436	1	3247	3247		16.473	0	1	138490	+		41645	19672	28754	28805	46988	46988					0.10861407259994849
LKKCNILIL	9	Unmodified	_LKKCNILIL_					0	0	0			REV__nc|ENSG00000121807|P41597|CCR2	REV__nc|ENSG00000121807|P41597|CCR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.74853515625	2	529.343738	1056.67292	0.41382	0.00021905	-4.213	-0.0022301	-3.7991	-0.002011	529.3414656812523	84.662	0.33469	84.503	84.364	84.698	-0.15868					12	7	2	0	0	0	0.024541	1	10267	10267		16.473	0	1	44258	+		41646	36617	28755	28806	46989	46989					0.14685300432779513
LKKDDRNKL	9	Unmodified	_LKKDDRNKL_					0	0	0			REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.337890625	2	565.33803	1128.66151	0.6854	0.00038748	-0.88167	-0.00049844	-0.19627	-0.00011096	565.3373101660706	19.197	0.44276	19.197	18.972	19.414	0					18	8	3	0	0	0	0.6504	1	386	386		49.442	1.7842	1	87461	+		41647	24740	28756	28807	46990	46990					0.10232194662967231
LKKDDRNKL	9	Unmodified	_LKKDDRNKL_					0	0	0			REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	565.33803	1128.66151	0.6854	0.00038748	-0.88167	-0.00049844	-0.19627	-0.00011096	565.3373101660706	19.197	0.44276	19.197	18.972	19.414	0	-0.10703	-0.00042299	NaN	49.442	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87461	+		41648	24740	28756	28807							0.10232194662967231
LKKDDRNKL	9	Unmodified	_LKKDDRNKL_					0	0	0			REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.33803	1128.66151	-0.36386	-0.0002057	0.11426	6.4597E-05	-0.2496	-0.00014111	565.3380047857302	19.393	0.44291	19.274	19.052	19.495	-0.11872	-0.030005	0.00070308	NaN	49.442	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87428	+		41649	24740	28756	28807							0.10232194662967231
LKKDDRNKL	9	Unmodified	_LKKDDRNKL_					0	0	0			REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	REV__SEC24D|p.M816Tfs*20|1|0.2|ENSG00000150961|chr4:118738298-118738310|TAACATGCCAACA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.33803	1128.66151	2.0282	0.0011466	-1.9819	-0.0011204	0.04634	2.6198E-05	565.3367795554808	19.375	0.39584	19.441	19.291	19.687	0.066195	0.13703	-0.001667	NaN	49.442	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61041	+		41650	24740	28756	28807							0.10232194662967231
LKKDILLP	8	Unmodified	_LKKDILLP_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.3157653808594	2	470.315503	938.616454	0.35122	0.00016518	-0.27939	-0.0001314	0.071833	3.3784E-05	470.31523834516287	56.345	1.1351	56.129	55.598	56.733	-0.21607					85	29	4	0	0	0	0.39824	1	6093	6093		97.473	3.4663	1	6063100			41651	4921	28757	28808	46991	46991					0.14468995867753165
LKKDRLSAS	9	Unmodified	_LKKDRLSAS_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48;nc|ENSG00000114742|Q8TAF3-2|WDR48;ENST00000466405.1_1_3:39133106-39135740:+|nuORF	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.3060302734375	2	509.306198	1016.59784	0.056025	2.8534E-05	-0.40178	-0.00020463	-0.34575	-0.00017609	509.30586273305124	92	1.5619	91.858	91.442	93.004	-0.14131					109	36	5	0	0	0	0.85329	1	11281	11281		35.618	0	1	3302600			41652	3380	28758	28809	46992	46992					0.09020834225884755
LKKDRPLK	8	Unmodified	_LKKDRPLK_					0	0	0		ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.8093566894531	2	499.329476	996.6444	-0.9095	-0.00045414	0.73142	0.00036522	-0.17808	-8.8921E-05	499.32973402771427	38.366	0.56069	38.187	37.939	38.5	-0.17929					24	15	2	0	0	0	0.027866	1	3133	3133		37.159	11.709	1	309600			41653	13874	28759	28810	46993	46993					0.1459431884783271
LKKDRPLK	8	Unmodified	_LKKDRPLK_					0	0	0		ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.329476	996.6444	-0.63882	-0.00031898	0.42635	0.00021289	-0.21247	-0.00010609	499.32963463419946	38.485	0.52438	38.266	38.083	38.607	-0.21848	0.017669	-0.00019373	NaN	21.96	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190490			41654	13874	28759	28810							0.1459431884783271
LKKEAKHA	8	Unmodified	_LKKEAKHA_					0	0	0			REV__ENSG00000006194|ENST00000219069|ZNF263;REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.7846374511719	2	462.784902	923.55525	-0.89185	-0.00041274	-0.053802	-2.4899E-05	-0.94566	-0.00043764	462.7849063720639	43.586	1.1809	43.367	43.068	44.249	-0.21938					83	32	4	0	0	0	0.845	1	3977	3977		55.504	0.73953	1	15075000	+		41655	19826;23794	28760	28811	46994	46994					0.09041483888313451
LKKEEPHLL	9	Unmodified	_LKKEEPHLL_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A;nc|ENSG00000130038|Q9BSW2-1|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8305053710938	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	0.80658	1	11317	11317		38.806	0.99462	1	4967900			41656	4381	28761	28812	46995	46995					0.10094577919812764
LKKELSVAM	9	Unmodified	_LKKELSVAM_					0	0	0			REV__ENSG00000102468|ENST00000542664|HTR2A	REV__ENSG00000102468|ENST00000542664|HTR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8038024902344	2	509.801903	1017.58925	0.50937	0.00025968	3.0016	0.0015302	3.5109	0.0017899	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.67687	1	10665	10665		47.657	7.0847	1	2754700	+		41657	21311	28762	28813	46996	46996					0.08116144265056846
LKKELSVAM	9	Unmodified	_LKKELSVAM_					0	0	0			REV__ENSG00000102468|ENST00000542664|HTR2A	REV__ENSG00000102468|ENST00000542664|HTR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.80322265625	2	509.801903	1017.58925	-0.39701	-0.0002024	3.951	0.0020142	3.554	0.0018118	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	0.75397	2	10637	10637;10842		42.396	3.1433	1	3182000	+		41658	21311	28762	28813	46997;46998	46997					0.08116144265056846
LKKELSVAM	9	Unmodified	_LKKELSVAM_					0	0	0			REV__ENSG00000102468|ENST00000542664|HTR2A	REV__ENSG00000102468|ENST00000542664|HTR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8035583496094	2	509.801903	1017.58925	0.28678	0.0001462	3.2196	0.0016413	3.5063	0.0017875	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.83071	2	10442	10351;10442		37.159	2.9866	1	3746700	+		41659	21311	28762	28813	46999;47000	47000					0.08116144265056846
LKKELSVAM	9	Unmodified	_LKKELSVAM_					0	0	0			REV__ENSG00000102468|ENST00000542664|HTR2A	REV__ENSG00000102468|ENST00000542664|HTR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8037109375	2	509.801903	1017.58925	0.56391	0.00028748	2.8432	0.0014495	3.4071	0.0017369	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.83071	2	10336	10336;10531		37.159	4.3467	1	3699900	+		41660	21311	28762	28813	47001;47002	47001					0.08116144265056846
LKKELSVAM	9	Unmodified	_LKKELSVAM_					0	0	0			REV__ENSG00000102468|ENST00000542664|HTR2A	REV__ENSG00000102468|ENST00000542664|HTR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.8037109375	2	509.801903	1017.58925	0.28849	0.00014708	3.1095	0.0015852	3.398	0.0017323	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.92825	1	10340	10340		30.504	0.18592	1	3441300	+		41661	21311	28762	28813	47003	47003					0.08116144265056846
LKKELVSL	8	Unmodified	_LKKELVSL_					0	0	0			REV__ENST00000585477.1_1_18:54814294-54814510:+|nuORF	REV__ENST00000585477.1_1_18:54814294-54814510:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2690734863281	2	465.305136	928.595718	0.28362	0.00013197	-1.0356	-0.00048185	-0.75194	-0.00034988	465.30445455955044	66.063	0.38628	66.063	65.837	66.224	0					22	9	3	0	0	0	0.027866	1	7832	7832		47.657	12.039	1	1006700	+		41662	35577	28763	28814	47004	47004					0.12856405488071232
LKKETEALK	9	Unmodified	_LKKETEALK_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8081665039062	2	530.324057	1058.63356	-0.35867	-0.00019021	-3.0858	-0.0016365	-3.4444	-0.0018267	530.3228266132485	73.471	0.19341	73.194	73.133	73.327	-0.2769					6	4	2	0	0	0	0.024495	1	8630	8630		26.693	12.556	1	73335	+		41663	26603	28764	28815	47005	47005					0.10658871682880999
LKKEYNVND	9	Unmodified	_LKKEYNVND_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.3138427734375	2	561.793121	1121.57169	-0.33132	-0.00018613	0.076881	4.3191E-05	-0.25444	-0.00014294	561.7933389588376	70.689	0.59236	70.701	70.385	70.978	0.012421					25	13	2	0	0	0	0.024405	1	8466	8466		20.947	0	1	225820			41664	1458	28765	28816	47006	47006					0.0157652026375672
LKKFGPEES	9	Unmodified	_LKKFGPEES_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2926635742188	2	517.779482	1033.54441	-0.77201	-0.00039973	3.7195	0.0019259	2.9474	0.0015261	517.7812793383	31.566	0.52105	31.635	31.406	31.927	0.06896					27	12	3	0	0	0	0.024477	1	2083	2083		20.947	8.7401	1	379220			41665	8195	28766	28817	47007	47007					0.028980367233771176
LKKFHILSQ	9	Unmodified	_LKKFHILSQ_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.3216552734375	2	557.342584	1112.67061	-0.62281	-0.00034712	-0.82413	-0.00045932	-1.4469	-0.00080644	557.3423689039103	28.807	0.42302	28.657	28.403	28.826	-0.14952					19	9	3	0	0	0	0.024427	1	1692	1692		34.173	0	1	67924			41666	9378	28767	28818	47008	47008					0.11878588019317249
LKKFLGKS	8	Unmodified	_LKKFLGKS_					0	0	0		nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.2222595214844	2	460.80002	919.585488	-0.067713	-3.1202E-05	-0.1058	-4.8751E-05	-0.17351	-7.9953E-05	460.7998261744437	41.999	1.4753	41.769	41.472	42.947	-0.23029					78	39	3	0	0	0	0.027866	1	3861	3861		12.959	0	1	1660200			41667	4544	28768	28819	47009	47009					0.12247842553506416
LKKFVFPK	8	Unmodified	_LKKFVFPK_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7869567871094	2	503.826038	1005.63752	-1.1027	-0.00055559	-2.4489	-0.0012338	-3.5517	-0.0017894	503.8228053792315	37.614	0.19513	37.395	37.311	37.506	-0.2195					6	4	2	0	0	0	0.027866	1	3039	3039		18.324	0	1	102460	+		41668	23417	28769	28820	47010	47010					0.13493005967268346
LKKGCKSV	8	Unmodified	_LKKGCKSV_					0	0	0		ENSG00000256771|ENST00000589717|ZNF253;nc|ENSG00000256771|O75346-2|ZNF253	ENSG00000256771|ENST00000589717|ZNF253	ENSG00000256771|ENST00000589717|ZNF253	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.8884582519531	2	431.762581	861.510608	-0.17218	-7.434E-05	-3.383	-0.0014607	-3.5552	-0.001535	431.76079427929864	22.068	0.5685	21.877	21.662	22.23	-0.19072					16	11	2	0	0	0	0.027866	1	725	725		20.482	0	1	27743			41669	10910	28770	28821	47011	47011					0.07431336750630635
LKKGGVIR	8	Unmodified	_LKKGGVIR_					0	0	0		ENST00000470597.5_1_5:64558740-64769500:-|nuORF	ENST00000470597.5_1_5:64558740-64769500:-|nuORF	ENST00000470597.5_1_5:64558740-64769500:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.7976989746094	2	435.797812	869.581071	-0.25996	-0.00011329	0.49275	0.00021474	0.23279	0.00010145	435.79786767543027	22.063	0.86043	21.873	21.324	22.184	-0.19072					42	17	4	0	0	0	1.0574	1	739	739		19.36	0	1	261110			41670	14933	28771	28822	47012	47012					0.14106378130611574
LKKGGVIR	8	Unmodified	_LKKGGVIR_					0	0	0		ENST00000470597.5_1_5:64558740-64769500:-|nuORF	ENST00000470597.5_1_5:64558740-64769500:-|nuORF	ENST00000470597.5_1_5:64558740-64769500:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.797812	869.581071	0.39928	0.00017401	-0.15547	-6.7753E-05	0.24381	0.00010625	435.7975807980689	21.899	0.80968	21.719	21.207	22.016	-0.17967	-0.07845	-0.00035371	NaN	19.36	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144820			41671	14933	28771	28822							0.14106378130611574
LKKGGVIR	8	Unmodified	_LKKGGVIR_					0	0	0		ENST00000470597.5_1_5:64558740-64769500:-|nuORF	ENST00000470597.5_1_5:64558740-64769500:-|nuORF	ENST00000470597.5_1_5:64558740-64769500:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	435.797812	869.581071	-0.13601	-5.9274E-05	0.35546	0.00015491	0.21945	9.5635E-05	435.7978493609406	22.003	0.91733	21.801	21.276	22.194	-0.20199	0.0032036	9.1618E-05	NaN	19.36	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262880			41672	14933	28771	28822							0.14106378130611574
LKKGIAISR	9	Unmodified	_LKKGIAISR_					0	0	0			REV__ENSG00000062725|ENST00000083182|APPBP2	REV__ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3088684082031	2	493.329476	984.6444	0.24799	0.00012234	-0.41556	-0.00020501	-0.16757	-8.2666E-05	493.3291385920245	18.441	0.69345	18.237	18.014	18.708	-0.20371					33	13	4	0	0	0	0.024541	1	310	310		5.9211	0	1	663730	+		41673	20266	28772	28823	47013	47013					0.15146318847826024
LKKGLVND	8	Unmodified	_LKKGLVND_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.27923583984375	2	443.77146	885.528367	-0.23128	-0.00010264	-1.2377	-0.00054927	-1.469	-0.00065191	443.7712804915034	54.826	0.24572	54.826	54.623	54.869	0					10	6	2	0	0	0	0.027866	1	6014	6014		24.203	0	1	147370			41674	1825	28773	28824	47014	47014					0.08102375277132978
LKKHLPQILK	10	Unmodified	_LKKHLPQILK_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.5870056152344	3	406.607931	1216.80196	0.436	0.00017728	0.85466	0.00034751	1.2907	0.00052479	406.60836696286356	25.103	0.12988	24.933	24.825	24.955	-0.17078					4	2	2	0	0	0	0.03519	1	1139	1139		21.686	0	1	30365			41675	4590	28774	28825	47015	47015					0.20223398387224734
LKKIAAGT	8	Unmodified	_LKKIAAGT_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.22198486328125	2	401.263271	800.511988	1.7167	0.00068884	-1.1848	-0.00047543	0.53184	0.00021341	401.2626681314636	24.444	0.43291	24.263	24.028	24.461	-0.18089					17	9	2	0	0	0	0.027866	1	1044	1044		12.207	0	1	86220	+		41676	28706	28775	28826	47016	47016					0.10375294111042876
LKKIDRPL	8	Unmodified	_LKKIDRPL_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;ENSG00000277149|ENST00000620995|TYW1B;nc|ENSG00000277149|Q6NUM6-2|TYW1B	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2576904296875	2	491.824027	981.633501	0.30677	0.00015088	-0.31279	-0.00015384	-0.0060173	-2.9595E-06	491.8235648403332	40.35	0.98875	40.35	40.062	41.051	0					68	27	3	0	0	0	0.027866	1	3501	3501		29.15	4.9468	1	2126600			41677	10233	28776	28827	47017	47017					0.14194916473547892
LKKIEDLGAA	10	Unmodified	_LKKIEDLGAA_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297119140625	2	529.316232	1056.61791	-0.54492	-0.00028844	0.51201	0.00027102	-0.032911	-1.742E-05	529.3166345520347	55.951	0.54504	55.795	55.628	56.173	-0.15601					22	14	2	0	0	0	0.03519	1	6239	6239		84.916	10.66	1	164400			41678	10033	28777	28828	47018	47018					0.09186585165844008
LKKIFREV	8	Unmodified	_LKKIFREV_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000485363.1_1_11:116775672-116969011:-|nuORF	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.830810546875	2	516.831852	1031.64915	-0.23807	-0.00012304	-0.28439	-0.00014698	-0.52246	-0.00027003	516.8316092983823	53.738	1.0865	53.54	53.201	54.287	-0.19739					84	31	4	0	0	0	0.93437	1	5657	5657		47.657	1.7054	1	10566000			41679	6823	28778	28829	47019	47019					0.13459202990588892
LKKIFSNVK	9	Unmodified	_LKKIFSNVK_					0	0	0		ENST00000496877.1_1_3:100630362-100630893:-|nuORF	ENST00000496877.1_1_3:100630362-100630893:-|nuORF	ENST00000496877.1_1_3:100630362-100630893:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.863037109375	2	538.844959	1075.67537	-1.5031	-0.00080995	-1.8119	-0.00097635	-3.3151	-0.0017863	538.8439049086434	80.474	0.29396	80.322	80.091	80.385	-0.15168					9	6	2	0	0	0	0.024427	1	9946	9946		42.396	10.441	1	104120			41680	15577	28779	28830	47020	47020					0.14055472162067417
LKKILVGLP	9	Unmodified	_LKKILVGLP_					0	0	0		nc|ENSG00000072756|Q96Q11-2|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2956237792969	2	490.846971	979.679388	-0.4689	-0.00023016	0.24071	0.00011815	-0.22818	-0.000112	490.8472553727514	56.706	0.4007	56.803	56.546	56.947	0.097893					17	11	2	0	0	0	0.024466	1	6256	6256		33.516	8.0654	1	195720			41681	18077	28780	28831	47021	47021					0.18873561655789217
LKKIWMPY	8	Unmodified	_LKKIWMPY_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000490115.5_1_3:48586091-48594264:-|nuORF;PFKFB4|p.F191Efs*4|1|0.31|ENSG00000114268|chr3:48538556-48538560|TGAAG/-|frameshift_variant	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7927856445312	2	539.809531	1077.60451	0.014224	7.6784E-06	1.1859	0.00064014	1.2001	0.00064782	539.8098116025991	78.428	0.41319	78.236	78.135	78.549	-0.1921					14	9	2	0	0	0	0.027866	1	9681	9681		44.531	11.015	1	136160			41682	3351	28781	28832	47022	47022					0.06881055852909412
LKKKGYEI	8	Unmodified	_LKKKGYEI_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.8023681640625	2	489.80276	977.590967	-0.91637	-0.00044884	0.55435	0.00027152	-0.36201	-0.00017732	489.8030056427524	25.266	0.76779	25.039	24.708	25.476	-0.22683					59	17	5	0	0	0	0.38451	2	1186	1174;1186		99.375	24.448	1	5271200	+		41683	23486	28782	28833	47023;47024	47024					0.1012752134532775
LKKKGYEI	8	Unmodified	_LKKKGYEI_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.8025207519531	2	489.80276	977.590967	-0.07473	-3.6603E-05	-0.27088	-0.00013268	-0.34561	-0.00016928	489.8025853401574	25.015	0.73197	24.84	24.511	25.243	-0.17484					58	16	5	0	0	0	0.47665	2	1132	1123;1132		87.754	17.944	1	4559600	+		41684	23486	28782	28833	47025;47026	47026					0.1012752134532775
LKKKGYEI	8	Unmodified	_LKKKGYEI_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.8026428222656	2	489.80276	977.590967	1.2495	0.00061199	-1.736	-0.00085029	-0.48652	-0.0002383	489.80186840830345	25.096	0.72148	24.925	24.643	25.364	-0.17151					57	16	5	0	0	0	0.47665	3	1116	1116;1126;1137		87.754	18.967	1	5140000	+		41685	23486	28782	28833	47027;47028;47029	47027					0.1012752134532775
LKKKGYEI	8	Unmodified	_LKKKGYEI_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	489.80276	977.590967	-0.07473	-3.6603E-05	-0.27088	-0.00013268	-0.34561	-0.00016928	489.8025853401574	25.015	0.73197	24.84	24.511	25.243	-0.17484	-0.094742	0.0002037	NaN	99.375	58	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4559600	+		41686	23486	28782	28833							0.1012752134532775
LKKKIAEET	9	Unmodified	_LKKKIAEET_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7926025390625	2	530.324057	1058.63356	1.1238	0.00059595	-1.2595	-0.00066796	-0.13578	-7.2005E-05	530.3231177274887	25.072	0.56281	24.901	24.513	25.076	-0.17151					22	12	3	0	0	0	0.024541	1	1073	1073		6.7355	0	1	140940			41687	5070	28783	28834	47030	47030					0.10658871682880999
LKKKKASFCK	10	Unmodified	_LKKKKASFCK_					0	0	0		ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.86669921875	2	590.865369	1179.71618	-1.6451	-0.00097203	3.2866	0.0019419	1.6415	0.00096992	590.8675248480401	102.24	1.0921	102.24	101.95	103.04	0					85	25	6	0	0	0	0.91678	2	13104	13092;13104		52.937	8.5595	1	5963900			41688	16734	28784	28835	47031;47032	47032					0.1335149021003872
LKKKKASFCK	10	Unmodified	_LKKKKASFCK_					0	0	0		ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.8666381835938	2	590.865369	1179.71618	0.62198	0.0003675	1.3867	0.00081938	2.0087	0.0011869	590.8660983357469	102.35	1.1233	102.34	102.02	103.14	-0.0054474					67	26	5	0	0	0	1.0122	1	13055	13055		44.377	12.422	1	6109300			41689	16734	28784	28835	47033	47033					0.1335149021003872
LKKKKASFCK	10	Unmodified	_LKKKKASFCK_					0	0	0		ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.8663330078125	2	590.865369	1179.71618	-0.71437	-0.0004221	2.1984	0.001299	1.484	0.00087686	590.8669241812987	102.37	1.1116	102.25	101.89	103	-0.12666					79	26	5	0	0	0	0.91678	2	12732	12721;12732		52.937	20.124	1	4456200			41690	16734	28784	28835	47034;47035	47035					0.1335149021003872
LKKKKASFCK	10	Unmodified	_LKKKKASFCK_					0	0	0		ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENST00000557583.1_1_14:58690362-58697140:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.8665161132812	2	590.865369	1179.71618	-0.3811	-0.00022518	1.8032	0.0010654	1.4221	0.00084025	590.8667438142205	102.45	1.104	102.28	101.97	103.08	-0.17178					75	26	5	0	0	0	1.0002	3	12720	12690;12720;12764		45.972	6.7194	1	5015400			41691	16734	28784	28835	47036;47037;47038	47037					0.1335149021003872
LKKKKINFF	9	Unmodified	_LKKKKINFF_					0	0	0		ENST00000367696.6_1_1:173962170-173991250:-|nuORF	ENST00000367696.6_1_1:173962170-173991250:-|nuORF	ENST00000367696.6_1_1:173962170-173991250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.376708984375	2	583.376426	1164.7383	-0.13284	-7.7494E-05	1.0801	0.0006301	0.94726	0.00055261	583.3768732961844	46.356	0.90649	46.259	45.632	46.539	-0.096653					61	24	4	0	0	0	0.94809	1	4478	4478		29.15	1.2673	1	5826800			41692	12875	28785	28836	47039	47039					0.16252037950107479
LKKKKKKTQL	10	Unmodified	_LKKKKKKTQL_					0	0	0		ENST00000287701.14_1_8:28909287-28909479:+|nuORF	ENST00000287701.14_1_8:28909287-28909479:+|nuORF	ENST00000287701.14_1_8:28909287-28909479:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.9058532714844	3	414.958852	1241.85473	-0.046376	-1.9244E-05	4.1537	0.0017236	4.1074	0.0017044	414.9610662467178	21.19	0.24524	21.1	21.01	21.255	-0.090092					5	4	2	0	0	0	0.03519	1	620	620		15.333	10.994	1	3766.9			41693	11767	28786	28837	47040	47040					0.24347356450016377
LKKKLLPPK	9	Unmodified	_LKKKLLPPK_					0	0	0			REV__ENSG00000139218|ENST00000369367|SCAF11	REV__ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.784423828125	2	532.881345	1063.74814	-0.67321	-0.00035874	1.5648	0.00083384	0.89157	0.0004751	532.8828128688817	45.76	0.2726	45.76	45.646	45.919	0					12	7	3	0	0	0	0.024436	1	4501	4501		30.504	0	1	578600	+		41694	23928	28787	28838	47041	47041					0.21881225955485206
LKKKLLPPK	9	Unmodified	_LKKKLLPPK_					0	0	0			REV__ENSG00000139218|ENST00000369367|SCAF11	REV__ENSG00000139218|ENST00000369367|SCAF11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.881345	1063.74814	-1.1036	-0.00058808	5.5415	0.002953	4.4379	0.0023649	532.8858171151415	45.889	0.18118	45.687	45.563	45.744	-0.20226	-0.036381	0.0015959	NaN	16.473	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71715	+		41695	23928	28787	28838							0.21881225955485206
LKKKMFMM	8	Unmodified	_LKKKMFMM_					0	0	0			REV__ENSG00000242550|ENST00000238508|SERPINB10	REV__ENSG00000242550|ENST00000238508|SERPINB10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2574462890625	2	528.791969	1055.56939	-0.26782	-0.00014162	-1.0192	-0.00053896	-1.287	-0.00068058	528.7914075152629	44.647	0.4463	44.684	44.476	44.923	0.036903					18	12	2	0	0	0	0.027866	1	4213	4213		35.201	8.4046	1	220460	+		41696	28978	28788	28839	47042	47042					0.04382353729101851
LKKKQHLY	8	Unmodified	_LKKKQHLY_					0	0	0			REV__PBK|p.E160K|1|0.16|ENSG00000168078|chr8:27820682-27820682|C/T|missense_variant	REV__PBK|p.E160K|1|0.16|ENSG00000168078|chr8:27820682-27820682|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2821044921875	2	529.329476	1056.6444	0.036048	1.9081E-05	-2.1412	-0.0011334	-2.1051	-0.0011143	529.3289013096278	59.836	0.19164	59.588	59.457	59.648	-0.24842					6	4	2	0	0	0	0.027866	1	6614	6614		19.36	7.849	1	35183	+		41697	37350	28789	28840	47043	47043					0.11834318847832037
LKKKQTVI	8	Unmodified	_LKKKQTVI_					0	0	0			REV__ENST00000494799.5_1_10:90751287-90770560:+|nuORF	REV__ENST00000494799.5_1_10:90751287-90770560:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2843933105469	2	479.326402	956.638252	-0.40793	-0.00019553	-4.3874	-0.002103	-4.7953	-0.0022985	479.3253195261392	75.535	0.58104	75.535	75.413	75.994	0					27	15	3	0	0	0	0.027866	1	9328	9328		4.3163	0	1	1003000	+		41698	31181	28790	28841	47044	47044					0.15819800616316115
LKKKSPKL	8	Unmodified	_LKKKSPKL_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.3290100097656	2	471.328945	940.643337	0.85141	0.00040129	-0.56115	-0.00026449	0.29026	0.00013681	471.32848575390483	18.723	0.74137	18.566	18.099	18.84	-0.15637					25	14	4	0	0	0	0.78825	1	338	338		60.118	6.7668	1	224030	+		41699	19855	28791	28842	47045	47045					0.17064104478936315
LKKKTHIL	8	Unmodified	_LKKKTHIL_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7953796386719	2	490.834394	979.654236	-0.0083115	-4.0796E-06	-0.50331	-0.00024704	-0.51162	-0.00025112	490.83400699165645	49.02	0.4093	48.838	48.667	49.076	-0.18206					15	10	2	0	0	0	0.027866	1	4879	4879		8.2313	0	1	78682	+		41700	21776	28792	28843	47046	47046					0.16359506853234507
LKKKTISVP	9	Unmodified	_LKKKTISVP_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	507.33951	1012.66447	-0.49373	-0.00025049	0.066603	3.379E-05	-0.42712	-0.0002167	507.339366992539	46.931	0.33689	46.991	46.842	47.179	0.059097					12	8	2	0	0	0	0.024457	1	4596	4596		37.159	0	1	108090	+		41701	22841	28793	28844	47047	47047					0.15864069787812696
LKKKVEVS	8	Unmodified	_LKKKVEVS_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.7800598144531	2	465.80276	929.590967	0.68426	0.00031873	-0.27132	-0.00012638	0.41295	0.00019235	465.8023151337322	19.265	0.29655	19.065	18.859	19.156	-0.2001					12	5	3	0	0	0	0.027866	1	403	403		20.482	8.275	1	34271	+		41702	25909	28794	28845	47048	47048					0.12335521345323741
LKKLAALID	9	Unmodified	_LKKLAALID_					0	0	0			REV__ENSG00000234127|ENST00000454678|TRIM26	REV__ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.8014831542969	2	492.826235	983.637917	-1.1358	-0.00055975	-3.1366	-0.0015458	-4.2724	-0.0021056	492.82415298984546	36.02	0.23671	35.978	35.83	36.067	-0.042454					9	6	2	0	0	0	0.024457	1	2815	2815		21.96	1.013	1	97168	+		41703	28913	28795	28846	47049	47049					0.14544380896461462
LKKLAEID	8	Unmodified	_LKKLAEID_					0	0	0			REV__ENSG00000198755|ENST00000322203|RPL10A	REV__ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.3154602050781	2	465.286943	928.559333	-0.57502	-0.00026755	0.43552	0.00020264	-0.1395	-6.4905E-05	465.2870451733473	48.12	0.41311	47.844	47.63	48.043	-0.27598					16	10	2	0	0	0	0.027866	1	4734	4734		76.847	8.3619	1	194510	+		41704	28465	28796	28847	47050	47050					0.09219528591370363
LKKLFARV	8	Unmodified	_LKKLFARV_					0	0	0			REV__ENST00000580291.5_1_17:21117690-21121415:+|nuORF	REV__ENST00000580291.5_1_17:21117690-21121415:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79254150390625	2	487.829112	973.643671	-1.1953	-0.00058309	-1.6422	-0.00080109	-2.8374	-0.0013842	487.82734496377464	36.015	0.27025	35.972	35.797	36.067	-0.042454					10	7	2	0	0	0	0.027866	1	2803	2803		26.796	7.4361	1	50205	+		41705	32502	28797	28848	47051	47051					0.15579524198778927
LKKLKLHKLVE	11	Unmodified	_LKKLKLHKLVE_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.766357421875	3	450.30614	1347.89659	-0.26919	-0.00012122	3.4517	0.0015543	3.1825	0.0014331	450.30729305489666	45.152	0.30434	44.9	44.786	45.091	-0.25252					10	7	2	0	0	0	0.024856	1	4249	4249		5.6988	0	1	58710	+		41706	27967	28798	28849	47052	47052					0.2365591213854259
LKKLKPNHT	9	Unmodified	_LKKLKPNHT_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7926025390625	2	539.840208	1077.66586	-0.98006	-0.00052908	-1.2907	-0.00069678	-2.2708	-0.0012259	539.8399083547198	78.338	0.28676	78.354	78.235	78.522	0.015907					9	6	2	0	0	0	0.024535	1	9634	9634		18.324	0.95945	1	38791			41707	11016	28799	28850	47053	47053					0.13013703876549698
LKKLLETL	8	Unmodified	_LKKLLETL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2845153808594	2	479.320786	956.627018	0.33847	0.00016224	-2.1277	-0.0010198	-1.7892	-0.0008576	479.31986737889446	75.758	0.1842	75.77	75.717	75.901	0.011635					5	4	2	0	0	0	0.027866	1	9245	9245		26.796	0	1	134690	+		41708	20533	28800	28851	47054	47054					0.14696978522169957
LKKLLKKCN	9	Unmodified	_LKKLLKKCN_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.297607421875	2	544.354637	1086.69472	-1.2513	-0.00068115	-2.0843	-0.0011346	-3.3356	-0.0018158	544.3533753763943	53.989	0.4896	53.852	53.661	54.151	-0.13617					34	15	3	0	0	0	0.024506	1	5665	5665		23.042	5.6775	1	893550	+		41709	28343	28801	28852	47055	47055					0.1548410518134915
LKKLQWSP	8	Unmodified	_LKKLQWSP_					0	0	0			REV__ENST00000461701.5_1_11:64680365-64680938:-|nuORF	REV__ENST00000461701.5_1_11:64680365-64680938:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.78961181640625	2	500.302927	998.591301	-0.12406	-6.2067E-05	0.82017	0.00041033	0.69611	0.00034827	500.80311527390637	92.933	0.343	92.933	92.708	93.051	0					20	7	4	0	0	0	0.027866	1	11792	11792		31.955	1.4512	1	115100	+		41710	32882	28802	28853	47056	47056					0.09194941065163675
LKKLTLLI	8	Unmodified	_LKKLTLLI_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3290710449219	2	471.341521	940.668489	0.51324	0.00024191	2.6347	0.0012419	3.148	0.0014838	471.34297683905703	22.586	0.13858	22.397	22.327	22.466	-0.18894					4	2	2	0	0	0	0.027866	1	812	812		12.959	0.75233	1	20544			41711	3450	28803	28854	47057	47057					0.19578159281513763
LKKLVWIV	8	Unmodified	_LKKLVWIV_					0	0	0		nc|ENSG00000138764|Q16589-2|CCNG2;ENSG00000138764|ENST00000316355|CCNG2;ENST00000497512.5_1_4:78078410-78106259:+|nuORF	nc|ENSG00000138764|Q16589-2|CCNG2	nc|ENSG00000138764|Q16589-2|CCNG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.8270568847656	2	499.841688	997.668823	-0.38651	-0.00019319	2.6913	0.0013452	2.3048	0.001152	499.84317444423436	22.016	0.3316	21.825	21.71	22.042	-0.19072					12	6	3	0	0	0	0.027866	1	721	721		28.254	7.7724	1	44789			41712	5281	28804	28855	47058	47058					0.1698957900135838
LKKMARKDK	9	Unmodified	_LKKMARKDK_					0	0	0			REV__ENSG00000146376|ENST00000368149|ARHGAP18	REV__ENSG00000146376|ENST00000368149|ARHGAP18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.3211059570312	2	559.347343	1116.68013	0.2537	0.00014191	1.821	0.0010186	2.0747	0.0011605	559.8488890181101	67.677	0.19173	67.701	67.595	67.786	0.023911					6	4	2	0	0	0	0.024457	1	7991	7991		37.159	16.212	1	143590	+		41713	24481	28805	28856	47059	47059					0.12646033033183812
LKKMHVLE	8	Unmodified	_LKKMHVLE_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.8267822265625	2	499.296788	996.579022	0.33599	0.00016776	3.1616	0.0015786	3.4976	0.0017463	499.2980510103061	22.12	0.75734	21.931	21.434	22.191	-0.18894					38	15	4	0	0	0	0.027866	1	720	720		73.975	29.598	1	251420			41714	4022	28806	28857	47060	47060					0.08059581330485344
LKKMIHIG	8	Unmodified	_LKKMIHIG_					0	0	0			REV__nc|ENSG00000119661|Q4LDG9-3|DNAL1	REV__nc|ENSG00000119661|Q4LDG9-3|DNAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2959289550781	2	470.294048	938.573543	4.0872	0.0019222	-0.60054	-0.00028243	3.4866	0.0016397	470.29387853859765	18.737	1.81	18.8	18.55	20.36	0.063307					78	36	4	0	0	0	1.0133	3	274	274;286;312		35.201	5.5846	1	3904300	+		41715	22470	28807	28858	47061;47062;47063	47061					0.10179902538675378
LKKMKYSF	8	Unmodified	_LKKMKYSF_					0	0	0		ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8187255859375	2	522.799163	1043.58377	-1.1698	-0.00061156	-4.0745	-0.0021301	-5.2443	-0.0027417	522.7966124271536	54.598	0.82158	54.598	54.01	54.831	0					22	12	2	0	0	0	0.027866	1	5945	5945		82.305	0	1	407590			41716	7435	28808	28859	47064	47064					0.06372465473259581
LKKMLIKT	8	Unmodified	_LKKMLIKT_					0	0	0		ENST00000299468.11_1_20:62891430-62891532:+|nuORF;ENST00000609372.1_1_20:62891430-62904657:+|nuORF	ENST00000299468.11_1_20:62891430-62891532:+|nuORF	ENST00000299468.11_1_20:62891430-62891532:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7926330566406	2	487.825181	973.635809	-1.0697	-0.00052182	1.2885	0.00062856	0.21882	0.00010675	487.8241503919566	36.098	0.30347	36.098	35.96	36.263	0					13	8	2	0	0	0	0.027866	1	2825	2825		23.042	9.2672	1	71137			41717	11883	28809	28860	47065	47065					0.14793628887014165
LKKMMRDLV	9	Unmodified	_LKKMMRDLV_					0	0	0			REV__ENSG00000163191|ENST00000271638|S100A11	REV__ENSG00000163191|ENST00000271638|S100A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.7672119140625	2	567.330304	1132.64606	-0.41333	-0.0002345	-3.0807	-0.0017478	-3.494	-0.0019823	567.328313769274	40.686	0.60279	40.686	40.448	41.051	0					34	16	3	0	0	0	0.024405	1	3659	3659		35.618	0	1	682020	+		41718	25543	28810	28861	47066	47066					0.08503868549928484
LKKMMRIK	8	Unmodified	_LKKMMRIK_					0	0	0		ENST00000360104.7_1_7:151873953-151874022:-|nuORF	ENST00000360104.7_1_7:151873953-151874022:-|nuORF	ENST00000360104.7_1_7:151873953-151874022:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2899780273438	2	524.330107	1046.64566	-0.0022579	-1.1839E-06	-2.0826	-0.001092	-2.0848	-0.0010931	524.3285249303516	71.803	0.35242	71.528	71.354	71.706	-0.2751					12	8	2	0	0	0	0.027866	1	8390	8390		31.955	6.5047	1	65019			41719	12755	28811	28862	47067	47067					0.12420493620720663
LKKMVSKP	8	Unmodified	_LKKMVSKP_					0	0	0		nc|ENSG00000074319|Q99816-2|TSG101	nc|ENSG00000074319|Q99816-2|TSG101	nc|ENSG00000074319|Q99816-2|TSG101	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.6079406738281	2	465.793881	929.573209	-0.076927	-3.5832E-05	3.7659	0.0017541	3.689	0.0017183	465.79568165581884	100.58	0.55309	100.58	100.31	100.86	0					19	12	2	0	0	0	0.027866	1	12902	12902		12.959	4.7279	1	233380			41720	18080	28812	28863	47068	47068					0.10560482818823402
LKKNLPVQ	8	Unmodified	_LKKNLPVQ_					0	0	0		nc|ENSG00000164113|Q96M93-3|ADAD1;nc|ENSG00000164113|Q96M93-2|ADAD1;ENSG00000164113|ENST00000296513|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.29022216796875	2	470.302927	938.591301	-0.66832	-0.00031431	-3.9883	-0.0018757	-4.6566	-0.00219	470.30085420530696	27.811	0.159	27.643	27.57	27.729	-0.16816					5	3	2	0	0	0	0.027866	1	1561	1561		30.504	6.3009	1	35671			41721	7215	28813	28864	47069	47069					0.11954941065164348
LKKNNKRD	8	Unmodified	_LKKNNKRD_					0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.305419921875	2	508.30399	1014.59343	-0.079683	-4.0503E-05	-2.0024	-0.0010178	-2.082	-0.0010583	508.8049522980106	41.588	0.31969	41.611	41.498	41.818	0.023006					11	8	2	0	0	0	0.027866	1	3678	3678		33.516	4.366	1	204920	+		41722	27415	28814	28865	47070	47070					0.08671369802982554
LKKNVARVW	9	Unmodified	_LKKNVARVW_					0	0	0		POU4F3|p.V318A|1|0.23|ENSG00000091010|chr5:146340380-146340380|T/C|missense_variant	POU4F3|p.V318A|1|0.23|ENSG00000091010|chr5:146340380-146340380|T/C|missense_variant	POU4F3|p.V318A|1|0.23|ENSG00000091010|chr5:146340380-146340380|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.7926025390625	2	557.3482	1112.68185	-0.71967	-0.0004011	-0.49811	-0.00027762	-1.2178	-0.00067873	557.3478071046271	57.602	0.42615	57.424	57.169	57.596	-0.17775					27	10	3	0	0	0	0.024381	1	6308	6308		37.159	2.9866	1	239590			41723	18982	28815	28866	47071	47071					0.13001410113474776
LKKPPPAV	8	Unmodified	_LKKPPPAV_					0	0	0		nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.1780090332031	2	425.281463	848.548374	1.3492	0.0005738	-1.0497	-0.00044641	0.29954	0.00012739	425.2808791883954	25.078	0.55363	24.906	24.688	25.241	-0.17151					26	12	3	0	0	0	0.027866	1	1121	1121		20.482	1.1219	1	290190			41724	2662	28816	28867	47072	47072					0.11804171007736386
LKKPPPAV	8	Unmodified	_LKKPPPAV_					0	0	0		nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	425.281463	848.548374	-0.28443	-0.00012096	0.72485	0.00030826	0.44042	0.0001873	425.2816530037384	25.257	0.47883	25.03	24.752	25.231	-0.22683	0.10417	0.00063267	NaN	26.796	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174470			41725	2662	28816	28867							0.11804171007736386
LKKPPPAV	8	Unmodified	_LKKPPPAV_					0	0	0		nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	425.281463	848.548374	0.045068	1.9167E-05	0.34743	0.00014776	0.3925	0.00016692	425.2814593114806	25.017	0.56184	24.842	24.598	25.159	-0.17484	-0.08433	0.00031166	NaN	26.796	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211400			41726	2662	28816	28867							0.11804171007736386
LKKPRDPTKK	10	Unmodified	_LKKPRDPTKK_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.2171325683594	3	404.25919	1209.75574	-0.69355	-0.00028037	2.7628	0.0011169	2.0692	0.0008365	404.59514713711604	21.989	0.67649	21.787	21.517	22.194	-0.20199					40	13	4	0	0	0	0.03519	1	745	745		16.007	0.67366	1	121580			41727	1515	28817	28868	47073	47073					0.15925333485097326
LKKPRDPTKK	10	Unmodified	_LKKPRDPTKK_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	404.25919	1209.75574	0.91358	0.00036932	0.64249	0.00025973	1.5561	0.00062906	404.59434957985917	21.879	0.62123	21.701	21.397	22.019	-0.17721	-0.087138	-0.0010107	NaN	16.007	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86472			41728	1515	28817	28868							0.15925333485097326
LKKPRDPTKK	10	Unmodified	_LKKPRDPTKK_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	404.25919	1209.75574	0.44184	0.00017862	1.0504	0.00042464	1.4923	0.00060326	404.59459084877585	22.068	0.57257	21.877	21.564	22.137	-0.19072	0.088414	-0.000516	NaN	16.007	35	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129040			41729	1515	28817	28868							0.15925333485097326
LKKQAEQMV	9	Unmodified	_LKKQAEQMV_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7823486328125	2	537.802434	1073.59032	-1.0947	-0.00058873	-3.0799	-0.0016564	-4.1746	-0.0022451	537.8005387891536	32.752	0.41359	32.759	32.553	32.967	0.0066261					16	10	2	0	0	0	0.024374	1	2299	2299		49.442	19.124	1	132890	+		41730	24776	28818	28869	47074	47074					0.056463586339759786
LKKQDVKDLI	10	Unmodified	_LKKQDVKDLI_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.58416748046875	3	400.583451	1198.72852	0.118	4.727E-05	1.4742	0.00059053	1.5922	0.0006378	400.5840285241121	25.26	0.93346	25.089	24.732	25.666	-0.17151					55	21	4	0	0	0	0.93809	1	1147	1147		51.528	2.9262	1	1569200	+		41731	21662	28819	28870	47075	47075					0.13710805154096306
LKKQHAPLD	9	Unmodified	_LKKQHAPLD_					0	0	0			REV__nc|ENSG00000154451|Q96PP8-2|GBP5	REV__nc|ENSG00000154451|Q96PP8-2|GBP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2880249023438	2	525.308741	1048.60293	0.3533	0.00018559	3.2869	0.0017266	3.6402	0.0019122	525.3104767834383	82.826	0.51984	82.606	82.391	82.911	-0.22015					18	11	2	0	0	0	0.024541	1	9951	9951		16.473	0	1	137670	+		41732	24960	28820	28871	47076	47076					0.08057138088497595
LKKQILLI	8	Unmodified	_LKKQILLI_					0	0	0		ENST00000354566.7_1_11:85436805-85436946:-|nuORF	ENST00000354566.7_1_11:85436805-85436946:-|nuORF	ENST00000354566.7_1_11:85436805-85436946:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.79779052734375	2	484.846971	967.679388	0.52411	0.00025411	2.7427	0.0013298	3.2668	0.0015839	484.84877754774874	58.842	0.21666	58.842	58.643	58.86	0					6	5	2	0	0	0	0.027866	1	6667	6667		26.796	0	1	273930			41733	12626	28821	28872	47077	47077					0.19425561655805268
LKKQKLTD	8	Unmodified	_LKKQKLTD_					0	0	0			REV__nc|ENSG00000110693|P35712-4|SOX6	REV__nc|ENSG00000110693|P35712-4|SOX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.30517578125	2	487.305667	972.596781	0.027784	1.3539E-05	-0.35839	-0.00017464	-0.3306	-0.00016111	487.3053633762337	19.665	0.82285	19.504	19.282	20.105	-0.1608					36	16	5	0	0	0	0.93274	1	450	450		47.916	8.6628	1	645280	+		41734	21867	28822	28873	47078	47078					0.10938619856972309
LKKQKLTD	8	Unmodified	_LKKQKLTD_					0	0	0			REV__nc|ENSG00000110693|P35712-4|SOX6	REV__nc|ENSG00000110693|P35712-4|SOX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.30535888671875	2	487.305667	972.596781	1.3053	0.0006361	-1.5354	-0.00074821	-0.23005	-0.0001121	487.3048054255853	19.731	0.49404	19.498	19.275	19.769	-0.23345					28	9	4	0	0	0	0.93274	1	430	430		47.916	0.25827	1	651230	+		41735	21867	28822	28873	47079	47079					0.10938619856972309
LKKREAEV	8	Unmodified	_LKKREAEV_					0	0	0			REV__ENSG00000047662|ENST00000265018|FAM184B	REV__ENSG00000047662|ENST00000265018|FAM184B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7950134277344	2	486.795466	971.57638	0.5067	0.00024666	-0.72063	-0.0003508	-0.21393	-0.00010414	486.7950270285052	18.775	1.138	18.618	18.346	19.484	-0.15637					45	22	3	0	0	0	0.6248	1	341	341		73.975	0	1	568910	+		41736	20131	28823	28874	47080	47080					0.08945449197176458
LKKRFELL	8	Unmodified	_LKKRFELL_					0	0	0		ENST00000464295.5_2_3:119962976-119963186:-|nuORF	ENST00000464295.5_2_3:119962976-119963186:-|nuORF	ENST00000464295.5_2_3:119962976-119963186:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8211669921875	2	523.839677	1045.6648	-0.78426	-0.00041083	1.6194	0.00084831	0.83514	0.00043748	523.8395066420311	48.198	0.18342	48.1	47.966	48.15	-0.097553					6	4	2	0	0	0	0.027866	1	4762	4762		55.504	0	1	57394			41737	14755	28824	28875	47081	47081					0.14379489507655308
LKKRGLGG	8	Unmodified	_LKKRGLGG_					0	0	0			REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.7613830566406	2	414.774337	827.534121	1.0342	0.00042895	-4.0143	-0.001665	-2.9802	-0.0012361	414.7725559122033	87.709	0.32191	87.709	87.406	87.728	0					11	7	2	0	0	0	0.027866	1	11036	11036		26.796	18.565	1	340450	+		41738	34134	28825	28876	47082	47082					0.1134551857948054
LKKRGLGG	8	Unmodified	_LKKRGLGG_					0	0	0			REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.76190185546875	2	414.774337	827.534121	-0.31843	-0.00013208	2.2716	0.00094219	1.9531	0.00081011	414.77524570570097	87.902	0.54939	87.723	87.491	88.041	-0.17875					27	13	3	0	0	0	0.027866	1	10670	10670		26.796	17.974	1	290670	+		41739	34134	28825	28876	47083	47083					0.1134551857948054
LKKRHLII	8	Unmodified	_LKKRHLII_					0	0	0			REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8443298339844	2	510.855661	1019.69677	0.065541	3.3482E-05	3.6308	0.0018548	3.6963	0.0018883	510.8574884541632	76.239	0.19873	76.251	76.166	76.365	0.011642					7	4	2	0	0	0	0.027866	1	9323	9323		14.664	0	1	206960	+		41740	29994	28826	28877	47084	47084					0.1877090198145197
LKKRHLII	8	Unmodified	_LKKRHLII_					0	0	0			REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.855661	1019.69677	-0.49336	-0.00025204	8.303	0.0042416	7.8096	0.0039896	510.8609227602235	76.315	0.78559	76.087	75.74	76.526	-0.22844	-0.08191	0.0035791	NaN	20.482	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229160	+		41741	29994	28826	28877							0.1877090198145197
LKKRKGRK	8	Unmodified	_LKKRKGRK_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.31573486328125	2	507.35636	1012.69817	-0.50358	-0.00025549	-2.8674	-0.0014548	-3.371	-0.0017103	507.3554499081077	68.831	0.22346	68.831	68.754	68.977	0					6	5	2	0	0	0	0.027866	1	8260	8260		19.36	0	1	40172			41742	3553	28827	28878	47085	47085					0.19232536070217066
LKKRKRKEK	9	Unmodified	_LKKRKRKEK_					0	0	0			REV__ENST00000507394.1_1_4:100479199-100480495:-|nuORF	REV__ENST00000507394.1_1_4:100479199-100480495:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	405.278696	1212.81426	0.7977	0.00032329	-2.8133	-0.0011402	-2.0156	-0.00081688	405.278272594832	27	0.21367	27.081	26.923	27.136	0.081293					7	5	2	0	0	0	0.024438	1	1364	1364		11.636	0	1	46569	+		41743	24398	28828	28879	47086	47086					0.21636434850233854
LKKRQKNY	8	Unmodified	_LKKRQKNY_					0	0	0		ERI1|p.L106Q|1|0.19|ENSG00000104626|chr8:9011571-9011571|T/A|missense_variant	ERI1|p.L106Q|1|0.19|ENSG00000104626|chr8:9011571-9011571|T/A|missense_variant	ERI1|p.L106Q|1|0.19|ENSG00000104626|chr8:9011571-9011571|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.2964477539062	2	539.330008	1076.64546	-0.51807	-0.00027941	-0.79566	-0.00042912	-1.3137	-0.00070853	539.3292928951186	58.629	0.36871	58.442	58.206	58.575	-0.18705					12	9	2	0	0	0	0.027866	1	6593	6593		18.324	0	1	99557			41744	17621	28829	28880	47087	47087					0.11020533216742479
LKKRSVQT	8	Unmodified	_LKKRSVQT_					0	0	0			REV__nc|ENSG00000143363|Q86TP1-6|PRUNE1	REV__nc|ENSG00000143363|Q86TP1-6|PRUNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.25250244140625	2	480.303458	958.592364	-0.47509	-0.00022819	-2.6964	-0.0012951	-3.1715	-0.0015233	480.3033050515146	35.51	0.15541	35.554	35.42	35.575	0.04406					5	3	2	0	0	0	0.027866	1	2680	2680		29.15	6.1071	1	28804	+		41745	24231	28830	28881	47088	47088					0.1114115543407479
LKKRTEITKV	10	Unmodified	_LKKRTEITKV_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|96|2|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|96|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7445983886719	3	405.930962	1214.77106	0.080287	3.2591E-05	4.1252	0.0016745	4.2055	0.0017071	405.93250774545896	38.254	1.0249	38.281	37.746	38.771	0.027275					60	28	3	0	0	0	0.03519	1	3116	3116		3.2113	0	1	654650	+		41746	36224	28831	28882	47089	47089					0.17226200282289028
LKKRTKILT	9	Unmodified	_LKKRTKILT_					0	0	0		ENST00000439696.2_1_14:69255479-69255557:-|nuORF	ENST00000439696.2_1_14:69255479-69255557:-|nuORF	ENST00000439696.2_1_14:69255479-69255557:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8085327148438	2	550.879333	1099.74411	-1.0011	-0.00055147	1.9913	0.001097	0.99025	0.00054551	550.8804717886636	55.78	0.10642	55.624	55.572	55.678	-0.15656					4	2	2	0	0	0	0.024541	1	6005	6005		11.511	0	1	64623			41747	14336	28832	28883	47090	47090					0.19823136461786817
LKKSFKDL	8	Unmodified	_LKKSFKDL_					0	0	0			REV__ENST00000538842.1_1_11:72527798-72531202:+|nuORF	REV__ENST00000538842.1_1_11:72527798-72531202:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.80255126953125	2	489.80276	977.590967	-0.91637	-0.00044884	0.55435	0.00027152	-0.36201	-0.00017732	489.8030056427524	25.266	0.76779	25.039	24.708	25.476	-0.22683					59	17	5	0	0	0	0.71063	1	1200	1200		66.429	5.4573	1	5271200	+		41748	26214	28833	28884	47091	47091					0.1012752134532775
LKKSFKDL	8	Unmodified	_LKKSFKDL_					0	0	0			REV__ENST00000538842.1_1_11:72527798-72531202:+|nuORF	REV__ENST00000538842.1_1_11:72527798-72531202:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.8026428222656	2	489.80276	977.590967	-0.07473	-3.6603E-05	-0.27088	-0.00013268	-0.34561	-0.00016928	489.8025853401574	25.015	0.73197	24.84	24.511	25.243	-0.17484					58	16	5	0	0	0	0.89627	1	1156	1156		51.335	1.3109	1	4559600	+		41749	26214	28833	28884	47092	47092					0.1012752134532775
LKKSFVNQL	9	Unmodified	_LKKSFVNQL_					0	0	0			REV__ENSG00000189339|ENST00000617444|SLC35E2B	REV__ENSG00000189339|ENST00000617444|SLC35E2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.825439453125	2	538.826766	1075.63898	-0.47024	-0.00025338	-0.34306	-0.00018485	-0.8133	-0.00043823	538.8264313665431	50.97	1.2592	50.97	50.341	51.6	0					92	35	4	0	0	0	0.2508	1	5362	5362		82.241	2.3013	1	5143700	+		41750	28114	28834	28885	47093	47093					0.1041859526535518
LKKSMLLN	8	Unmodified	_LKKSMLLN_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2;TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant;TM9SF2|p.H152Q|1|0.3|ENSG00000125304|chr13:99529589-99529589|T/A|missense_variant	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7781677246094	2	473.791338	945.568123	-0.5615	-0.00026603	0.29815	0.00014126	-0.26334	-0.00012477	473.79178794662	24.245	0.48984	24.198	24.088	24.578	-0.047148					14	10	2	0	0	0	0.027866	1	1045	1045		53.351	0	1	49130			41751	4094	28835	28886	47094	47094					0.09316178956203203
LKKSTSSV	8	Unmodified	_LKKSTSSV_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.25640869140625	2	425.255643	848.496732	-0.26602	-0.00011313	1.8585	0.00079035	1.5925	0.00067723	425.2562630776489	38.071	0.67558	37.892	37.63	38.305	-0.17929					47	19	4	0	0	0	1.043	1	3109	3109		30.504	0	1	3050700	+		41752	26215;36902	28836	28887	47095	47095					0.06642382523182278
LKKSTSSV	8	Unmodified	_LKKSTSSV_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	425.255643	848.496732	-0.26602	-0.00011313	1.8585	0.00079035	1.5925	0.00067723	425.2562630776489	38.071	0.67558	37.892	37.63	38.305	-0.17929	-0.017978	-0.00012242	NaN	30.504	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3050700	+		41753	26215;36902	28836	28887							0.06642382523182278
LKKSTSSV	8	Unmodified	_LKKSTSSV_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	425.255643	848.496732	-0.60193	-0.00025597	2.1963	0.00093398	1.5943	0.000678	425.25644444488586	38.127	0.68942	37.906	37.686	38.375	-0.22149	-0.0040937	0.00016482	NaN	30.504	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2966600	+		41754	26215;36902	28836	28887							0.06642382523182278
LKKSTSSV	8	Unmodified	_LKKSTSSV_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	425.255643	848.496732	-0.37378	-0.00015895	1.8027	0.00076661	1.4289	0.00060765	425.2562312834648	38.15	0.75658	37.932	37.571	38.327	-0.21849	0.022071	-0.00016992	NaN	30.504	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3249300	+		41755	26215;36902	28836	28887							0.06642382523182278
LKKTKELQ	8	Unmodified	_LKKTKELQ_					0	0	0		nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1;nc|ENSG00000072952|Q9Y6F6-6|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7948303222656	2	494.313492	986.612431	-0.44279	-0.00021888	-1.0655	-0.00052667	-1.5082	-0.00074554	494.31279976983683	36.54	0.4502	36.497	36.28	36.73	-0.042454					26	11	3	0	0	0	0.027866	1	2867	2867		11.511	0	1	314950			41756	1495	28837	28888	47096	47096					0.11858906374038725
LKKTKELQ	8	Unmodified	_LKKTKELQ_					0	0	0		nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1;nc|ENSG00000072952|Q9Y6F6-6|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.313492	986.612431	0.53647	0.00026519	-1.6938	-0.00083727	-1.1573	-0.00057208	494.3124112160855	36.716	0.49218	36.716	36.474	36.966	0	0.073814	-0.00054461	NaN	5.9211	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355960			41757	1495	28837	28888							0.11858906374038725
LKKTKELQ	8	Unmodified	_LKKTKELQ_					0	0	0		nc|ENSG00000072952|Q9Y6F6-3|IRAG1;nc|ENSG00000072952|Q9Y6F6-5|IRAG1;nc|ENSG00000072952|Q9Y6F6-1|IRAG1;nc|ENSG00000072952|Q9Y6F6-2|IRAG1;nc|ENSG00000072952|Q9Y6F6-4|IRAG1;nc|ENSG00000072952|Q9Y6F6|IRAG1;ENSG00000072952|ENST00000423302|IRAG1;nc|ENSG00000072952|Q9Y6F6-6|IRAG1;nc|ENSG00000072952|Q9Y6F6-8|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	nc|ENSG00000072952|Q9Y6F6-3|IRAG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.313492	986.612431	-0.40862	-0.00020199	-0.8248	-0.00040771	-1.2334	-0.0006097	494.31309845657665	36.676	0.48543	36.714	36.478	36.963	0.038044	0.071245	0.0003145	NaN	5.9211	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383350			41758	1495	28837	28888							0.11858906374038725
LKKTKGQA	8	Unmodified	_LKKTKGQA_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2796630859375	2	437.279452	872.544351	-0.028377	-1.2409E-05	0.13396	5.8579E-05	0.10558	4.617E-05	437.27940681848236	21.599	0.8219	21.409	21.078	21.9	-0.19072					46	16	4	0	0	0	0.77775	1	694	694		60.972	9.6365	1	950110	+		41759	23210	28838	28889	47097	47097					0.1029808151403131
LKKTKVKGK	9	Unmodified	_LKKTKVKGK_					0	0	0			REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF	REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2816772460938	2	515.360776	1028.707	-0.83071	-0.00042811	3.887	0.0020032	3.0563	0.0015751	515.3631385633888	65.241	0.16884	65.241	65.091	65.26	0					8	4	3	0	0	0	0.024541	1	7709	7709		7.1934	2.8771	1	155280	+		41760	23648	28839	28890	47098	47098					0.19379464916028155
LKKTNKQTT	9	Unmodified	_LKKTNKQTT_					0	0	0		nc|ENSG00000186960|Q86U37|LINC01551;ENST00000399387.8_1_14:29242013-29261464:+|nuORF	nc|ENSG00000186960|Q86U37|LINC01551	nc|ENSG00000186960|Q86U37|LINC01551	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3194580078125	2	531.319306	1060.62406	-0.48852	-0.00025956	-0.059295	-3.1505E-05	-0.54781	-0.00029106	531.3192925010384	93.662	1.7888	93.662	93.261	95.05	0					114	42	5	0	0	0	0.89441	1	11888	11888		32.812	0	1	4009000			41761	13643	28840	28891	47099	47099					0.0961710339736328
LKKTQPTVI	9	Unmodified	_LKKTQPTVI_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.331298828125	2	514.329142	1026.64373	-0.65534	-0.00033706	1.2447	0.00064018	0.58936	0.00030312	514.3297325669535	70.026	0.76947	70.039	69.503	70.272	0.012421					31	20	2	0	0	0	0.82115	1	8386	8386		37.812	0	1	1476400			41762	9547	28841	28892	47100	47100					0.13147479408121399
LKKTVLSAM	9	Unmodified	_LKKTVLSAM_					0	0	0		ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.8058776855469	2	495.804445	989.594338	0.17837	8.8437E-05	3.4225	0.0016969	3.6009	0.0017853	495.80599426573156	89.928	1.4923	89.911	89.372	90.865	-0.016708					85	35	4	0	0	0	0.72875	1	11347	11347		44.117	5.3107	1	994920			41763	12242	28842	28893	47101	47101					0.09912448127670359
LKKTVLSAM	9	Unmodified	_LKKTVLSAM_					0	0	0		ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.8044738769531	2	495.804445	989.594338	-0.50371	-0.00024974	4.2846	0.0021243	3.7809	0.0018746	495.80652594744515	90.022	1.3395	89.897	89.373	90.712	-0.12512					80	31	4	0	0	0	0.85329	1	11035	11035		35.618	0.41757	1	722730			41764	12242	28842	28893	47102	47102					0.09912448127670359
LKKTVLSAM	9	Unmodified	_LKKTVLSAM_					0	0	0		ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	495.804445	989.594338	0.24949	0.0001237	3.4009	0.0016862	3.6504	0.0018099	495.8060840239016	89.945	1.4022	89.959	89.591	90.993	0.013443	0.051183	-0.00069428	NaN	44.117	84	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074700			41765	12242	28842	28893							0.09912448127670359
LKKTWEDI	8	Unmodified	_LKKTWEDI_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2900390625	2	516.78985	1031.56515	-1.2946	-0.00066901	-3.8068	-0.0019673	-5.1014	-0.0026364	516.7879429393475	28.452	0.54028	28.207	28.081	28.621	-0.24524					21	12	2	0	0	0	0.027866	1	1646	1646		49.442	8.0149	1	205120			41766	5644	28843	28894	47103	47103					0.050626271030296266
LKKVESLLR	9	Unmodified	_LKKVESLLR_					0	0	0			REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8353881835938	2	543.355691	1084.69683	-1.1872	-0.00064509	4.0481	0.0021996	2.8609	0.0015545	543.3576878990913	51.551	0.66068	51.403	51.084	51.745	-0.14735					45	18	4	0	0	0	0.024484	1	5500	5500		37.812	5.8567	1	1148100	+		41767	22164	28844	28895	47104	47104					0.1578685719080113
LKKVESLLR	9	Unmodified	_LKKVESLLR_					0	0	0			REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.355691	1084.69683	-0.2443	-0.00013274	3.3959	0.0018452	3.1516	0.0017124	543.357274296981	51.305	0.60292	51.305	51.03	51.633	0	-0.041394	-0.00053956	NaN	44.377	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1362400	+		41768	22164	28844	28895							0.1578685719080113
LKKVESLLR	9	Unmodified	_LKKVESLLR_					0	0	0			REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	REV__ENST00000470322.5_1_10:104240622-104242055:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.355691	1084.69683	-1.6804	-0.00091307	4.6026	0.0025008	2.9221	0.0015878	543.357943499481	51.244	0.58008	51.331	50.964	51.544	0.087006	-0.015728	0.00077173	NaN	44.377	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	829450	+		41769	22164	28844	28895							0.1578685719080113
LKKVKVQLQCV	11	Unmodified	_LKKVKVQLQCV_					0	0	0		ENSG00000149735|ENST00000279168|GPHA2	ENSG00000149735|ENST00000279168|GPHA2	ENSG00000149735|ENST00000279168|GPHA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	643.4047241210938	2	643.404858	1284.79516	-1.6875	-0.0010858	4.0128	0.0025818	2.3252	0.0014961	643.4079123955756	104.44	0.95735	104.31	103.65	104.61	-0.12561					46	24	3	0	0	0	1.0442	1	12996	12996		26.693	5.0072	1	373140			41770	6116	28845	28896	47105	47105					0.16415717444328948
LKKVLASS	8	Unmodified	_LKKVLASS_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2750244140625	2	423.276378	844.538203	-0.082883	-3.5082E-05	-3.2282	-0.0013664	-3.3111	-0.0014015	423.27490422918225	87.973	0.84181	87.795	87.405	88.247	-0.17875					58	20	4	0	0	0	1.0574	1	10695	10695		18.324	4.5491	1	1819200			41771	3505	28846	28897	47106	47106					0.10971563282510033
LKKVVIFL	8	Unmodified	_LKKVVIFL_					0	0	0		ENST00000518622.5_1_19:48714695-48714965:-|nuORF	ENST00000518622.5_1_19:48714695-48714965:-|nuORF	ENST00000518622.5_1_19:48714695-48714965:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2922058105469	2	480.336239	958.657924	-0.30361	-0.00014583	-0.84324	-0.00040504	-1.1468	-0.00055087	480.3372700924319	31.544	0.15495	31.359	31.245	31.4	-0.18503					5	3	2	0	0	0	0.027866	1	2099	2099		20.482	10.217	1	39200			41772	15932	28847	28898	47107	47107					0.17694176627082925
LKKYNPKKL	9	Unmodified	_LKKYNPKKL_					0	0	0			REV__ENSG00000068796|ENST00000407818|KIF2A	REV__ENSG00000068796|ENST00000407818|KIF2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.277587890625	2	566.366059	1130.71756	0.16272	9.2158E-05	-0.071672	-4.0593E-05	0.091046	5.1565E-05	566.3662341273656	75.325	0.32649	75.15	74.986	75.312	-0.17548					9	7	2	0	0	0	0.024436	1	8904	8904		23.042	10.836	1	74377	+		41773	20388	28848	28899	47108	47108					0.15743447570457647
LKKYNPKKL	9	Unmodified	_LKKYNPKKL_					0	0	0			REV__ENSG00000068796|ENST00000407818|KIF2A	REV__ENSG00000068796|ENST00000407818|KIF2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	566.366059	1130.71756	-0.1558	-8.8241E-05	-1.4883	-0.00084291	-1.6441	-0.00093116	566.365039683059	75.519	0.48393	75.246	75.018	75.502	-0.27266	0.038933	-8.2753E-05	NaN	23.042	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289090	+		41774	20388	28848	28899							0.15743447570457647
LKKYNPKKL	9	Unmodified	_LKKYNPKKL_					0	0	0			REV__ENSG00000068796|ENST00000407818|KIF2A	REV__ENSG00000068796|ENST00000407818|KIF2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	566.366059	1130.71756	-0.23847	-0.00013506	-1.4726	-0.00083405	-1.7111	-0.00096911	566.3652165677878	75.485	0.36491	75.227	75.033	75.398	-0.25865	0.019088	-6.5025E-05	NaN	23.042	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155610	+		41775	20388	28848	28899							0.15743447570457647
LKKYPSTQ	8	Unmodified	_LKKYPSTQ_					0	0	0		ENST00000350796.7_1_7:6203761-6203953:-|nuORF	ENST00000350796.7_1_7:6203761-6203953:-|nuORF	ENST00000350796.7_1_7:6203761-6203953:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7767639160156	2	482.776742	963.538931	0.6934	0.00033476	-0.18076	-8.7268E-05	0.51264	0.00024749	482.77627247229407	97.308	1.5198	97.308	96.749	98.269	-3.8147E-05					71	34	4	0	0	0	0.96769	1	12337	12337		42.396	3.59	1	1009800			41776	12594	28849	28900	47109	47109					0.05570357931560466
LKKYTFWEV	9	Unmodified	_LKKYTFWEV_					0	0	0		sp|P03101|VL1_HPV16MajorcapsidproteinL1OS=Humanpapillomavirustype16OX=333760GN=L1PE=1SV=3	sp|P03101|VL1_HPV16MajorcapsidproteinL1OS=Humanpapillomavirustype16OX=333760GN=L1PE=1SV=3	sp|P03101|VL1_HPV16MajorcapsidproteinL1OS=Humanpapillomavirustype16OX=333760GN=L1PE=1SV=3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.5706787109375	3	405.225375	1212.6543	0.07164	2.903E-05	2.7412	0.0011108	2.8128	0.0011398	405.2264841949581	30.579	0.74743	30.587	30.164	30.911	0.0086708					45	17	5	0	0	0	0.024541	1	1906	1906		4.6126	0	1	422940			41777	37913	28850	28901	47110	47110					0.05647462062552222
LKLAEILY	8	Unmodified	_LKLAEILY_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.7611389160156	2	481.799686	961.584819	-0.22823	-0.00010996	-3.7845	-0.0018234	-4.0127	-0.0019333	481.7979335935184	42.071	0.36127	42.097	41.928	42.289	0.026012					15	10	2	0	0	0	0.027866	1	3756	3756		40.573	0	1	93128			41778	1698	28851	28902	47111	47111					0.10249003113790423
LKLALLALPLL	11	Unmodified	_LKLALLALPLL_					0	0	0		nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	nc|ENSG00000166482|P55083-2|MFAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3428344726562	2	589.41776	1176.82097	-0.5277	-0.00031103	3.4237	0.002018	2.896	0.001707	589.419607904643	92.728	0.2081	92.587	92.412	92.62	-0.14131					5	4	2	0	0	0	0.024812	1	11376	11376		5.9211	0	1	27348			41779	18476	28852	28903	47112	47112					0.2396293495826285
LKLANNTTV	9	Unmodified	_LKLANNTTV_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2868957519531	2	487.287474	972.560395	1.0484	0.00051087	-1.7309	-0.00084344	-0.68249	-0.00033257	487.2865535510062	37.252	0.66629	37.252	36.966	37.632	0					42	17	4	0	0	0	0.053401	2	3023	3012;3023		127.46	0	1	10525000			41780	1533	28853	28904	47113;47114	47114					0.07301742960260071
LKLANNTTV	9	Unmodified	_LKLANNTTV_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2871398925781	2	487.287474	972.560395	0.25458	0.00012405	-1.0533	-0.00051325	-0.79871	-0.0003892	487.2868783682916	37.134	0.73347	37.07	36.789	37.522	-0.063385					45	19	4	0	0	0	0.03666	2	2979	2979;2990		136.27	0	1	9817800			41781	1533	28853	28904	47115;47116	47115					0.07301742960260071
LKLANNTTV	9	Unmodified	_LKLANNTTV_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.287109375	2	487.287474	972.560395	-0.40099	-0.0001954	-0.50594	-0.00024654	-0.90694	-0.00044194	487.2871266934691	37.211	0.83003	37.244	36.957	37.787	0.032269					45	21	3	0	0	0	0.03666	3	2957	2947;2957;2969		136.27	0	1	9246000			41782	1533	28853	28904	47117;47118;47119	47118					0.07301742960260071
LKLARELE	8	Unmodified	_LKLARELE_					0	0	0			REV__ENSG00000101004|ENST00000278886|NINL	REV__ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2817687988281	2	486.297842	970.581131	-0.62683	-0.00030483	1.1146	0.000542	0.48772	0.00023718	486.29830761081564	65.54	0.59221	65.267	64.94	65.532	-0.27282					29	16	2	0	0	0	0.027866	1	7719	7719		38.806	0	1	1236000	+		41783	21176	28854	28905	47120	47120					0.09466333339946686
LKLCRKRI	8	Unmodified	_LKLCRKRI_					0	0	0			REV__ENSG00000182585|ENST00000413830|EPGN	REV__ENSG00000182585|ENST00000413830|EPGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3115844726562	2	515.339321	1028.66409	0.47802	0.00024634	1.0225	0.00052693	1.5005	0.00077327	515.3393589022689	20.163	0.24068	19.939	19.779	20.02	-0.22344					6	4	2	0	0	0	0.027866	1	496	496		52.299	0	1	19699	+		41784	27494	28855	28906	47121	47121					0.15090371586939
LKLDHDLK	8	Unmodified	_LKLDHDLK_					0	0	0		nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.29052734375	2	491.290017	980.565481	0.82396	0.0004048	-0.82893	-0.00040724	-0.0049667	-2.4401E-06	491.2895083322687	73.743	1.2398	73.743	73.477	74.717	0					53	29	3	0	0	0	0.71833	1	8999	8999		65.803	10.299	1	5601200			41785	18186	28856	28907	47122	47122					0.07442046822882276
LKLDHDLK	8	Unmodified	_LKLDHDLK_					0	0	0		nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.289794921875	2	491.290017	980.565481	0.040001	1.9652E-05	-0.036095	-1.7733E-05	0.0039053	1.9186E-06	491.289864404351	74.051	1.1911	73.78	73.499	74.69	-0.27126					57	28	3	0	0	0	0.94517	1	9041	9041		45.952	1.4209	1	5858600			41786	18186	28856	28907	47123	47123					0.07442046822882276
LKLDHDLK	8	Unmodified	_LKLDHDLK_					0	0	0		nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-8|ARMC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2912902832031	2	491.290017	980.565481	-0.60574	-0.00029759	0.43206	0.00021227	-0.17368	-8.5327E-05	491.2901471375091	73.762	1.0908	73.771	73.558	74.648	0.0096512					48	25	3	0	0	0	0.30053	1	8925	8925		111.65	8.8749	1	5584100			41787	18186	28856	28907	47124	47124					0.07442046822882276
LKLDLIMLF	9	Unmodified	_LKLDLIMLF_					0	0	0			REV__ENST00000539098.5_1_12:133618053-133624816:+|nuORF	REV__ENST00000539098.5_1_12:133618053-133624816:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.2254028320312	2	553.338121	1104.66169	-0.48542	-0.0002686	3.8394	0.0021245	3.354	0.0018559	553.3399505773021	31.029	0.32418	30.844	30.66	30.984	-0.18503					9	7	2	0	0	0	0.024541	1	2003	2003		12.959	3.2535	1	35777	+		41788	34728	28857	28908	47125	47125					0.11354478338603258
LKLDLIMLF	9	Unmodified	_LKLDLIMLF_					0	0	0			REV__ENST00000539098.5_1_12:133618053-133624816:+|nuORF	REV__ENST00000539098.5_1_12:133618053-133624816:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.338121	1104.66169	-0.33929	-0.00018774	3.3842	0.0018726	3.0449	0.0016849	553.3398926403391	31.101	0.3202	30.949	30.765	31.085	-0.15231	0.052244	-0.00034265	NaN	12.959	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52236	+		41789	34728	28857	28908							0.11354478338603258
LKLDRNPK	8	Unmodified	_LKLDRNPK_					0	0	0			REV__ENSG00000157637|ENST00000374759|SLC38A10	REV__ENSG00000157637|ENST00000374759|SLC38A10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.8299255371094	2	492.303458	982.592364	-0.13902	-6.8439E-05	0.58495	0.00028797	0.44594	0.00021954	492.30375496977285	25.939	0.2958	25.768	25.542	25.837	-0.17078					11	7	2	0	0	0	0.027866	1	1259	1259		63.306	0	1	58954	+		41790	25142	28858	28909	47126	47126					0.10037155434076794
LKLEELTV	8	Unmodified	_LKLEELTV_					0	0	0		nc|ENSG00000176909|Q6ZN01-3|MAMSTR;nc|ENSG00000176909|Q6ZN01-2|MAMSTR;ENSG00000176909|ENST00000318083|MAMSTR	nc|ENSG00000176909|Q6ZN01-3|MAMSTR	nc|ENSG00000176909|Q6ZN01-3|MAMSTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2850646972656	2	472.786776	943.558998	0.29707	0.00014045	-3.6458	-0.0017237	-3.3487	-0.0015832	472.7866478462673	83.539	1.6973	83.448	83.043	84.741	-0.090454					83	39	5	0	0	0	0.77775	1	10408	10408		60.972	0	1	3320500			41791	8682	28859	28910	47127	47127					0.08496108871509023
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.3076171875	2	619.310289	1236.60602	-0.84924	-0.00052594	-2.5843	-0.0016005	-3.4335	-0.0021264	619.3085766857085	48.089	2.2536	48.089	46.852	49.106	0					174	65	4	0	0	0	0.11225	3	4876	4853;4876;4887		132.76	10.678	1	6876400			41792	37833	28860	28911	47128;47129;47130	47129					-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.308349609375	2	619.310289	1236.60602	-0.39592	-0.0002452	-3.193	-0.0019775	-3.5889	-0.0022227	619.3081918629942	48.227	2.7448	48.074	46.698	49.443	-0.15301					197	77	5	0	0	0	0.1333	2	4875	4875;4900		129.42	7.2453	1	7564100			41793	37833	28860	28911	47131;47132	47131					-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.3077392578125	2	619.310289	1236.60602	-1.2896	-0.00079867	-2.1405	-0.0013256	-3.4301	-0.0021243	619.3088183493469	47.885	2.4978	47.952	46.737	49.234	0.066666					183	70	4	0	0	0	0.11225	3	4777	4777;4789;4800		132.76	28.011	1	6973100			41794	37833	28860	28911	47133;47134;47135	47133					-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.3095092773438	2	619.310289	1236.60602	-0.45148	-0.0002796	-1.9332	-0.0011972	-2.3847	-0.0014768	619.3089756151306	39.56	0.80132	39.395	39.116	39.918	-0.16459					49	20	3	0	0	0	0.1333	1	3367	3367		129.42	41.725	1	1582000			41795	37833	28860	28911	47136	47136					-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	619.310289	1236.60602	-0.77457	-0.0004797	-1.8877	-0.0011691	-2.6622	-0.0016488	619.3088916574661	39.512	0.31274	39.413	39.234	39.547	-0.098755	-0.10562	-0.00021625	NaN	129.42	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108700			41796	37833	28860	28911							-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	619.310289	1236.60602	-1.4921	-0.00092408	-1.1938	-0.00073934	-2.6859	-0.0016634	619.8112355622247	39.718	0.5646	39.742	39.562	40.126	0.023727	0.22317	0.00064318	NaN	129.42	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200650			41797	37833	28860	28911							-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	619.310289	1236.60602	-0.56729	-0.00035133	-3.0092	-0.0018636	-3.5765	-0.002215	619.3082050296179	48.053	2.0869	47.956	46.681	48.768	-0.097553	-0.071305	-0.00032828	NaN	132.76	114	56	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1077600			41798	37833	28860	28911							-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	619.310289	1236.60602	-1.5828	-0.00098026	-2.0987	-0.0012997	-3.6815	-0.00228	619.3088406382728	48.373	1.8914	48.097	46.794	48.685	-0.27598	0.069718	0.00079956	NaN	132.76	111	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	980920			41799	37833	28860	28911							-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	619.310289	1236.60602	-1.1787	-0.00072996	-1.3829	-0.00085647	-2.5616	-0.0015864	619.3093417907944	39.743	0.59058	39.52	39.263	39.854	-0.22311	0.0017666	0.00040893	NaN	129.42	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761740			41800	37833	28860	28911							-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	619.310289	1236.60602	0.12609	7.8087E-05	-3.8042	-0.002356	-3.6782	-0.0022779	619.3078052650043	48.182	1.9434	47.995	46.719	48.662	-0.18684	-0.031753	-0.001313	NaN	132.76	91	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147700			41801	37833	28860	28911							-0.002813996396298535
LKLEFCEENI	10	Unmodified	_LKLEFCEENI_					0	0	0		RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	RGS2|p.S103L|1|0.3|ENSG00000116741|chr1:192811014-192811014|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	619.310289	1236.60602	-0.10221	-6.3298E-05	-2.3124	-0.0014321	-2.4146	-0.0014954	619.3087400890698	39.753	0.69271	39.523	39.237	39.93	-0.23021	0.0041941	-0.0007423	NaN	129.42	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869200			41802	37833	28860	28911							-0.002813996396298535
LKLELIGSET	10	Unmodified	_LKLELIGSET_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.33154296875	2	551.821347	1101.62814	2.0531	0.0011329	0.82574	0.00045566	2.8788	0.0015886	552.3238379090329	19.038	0.29588	18.805	18.682	18.978	-0.23345					9	5	2	0	0	0	0.03519	1	343	343		40.778	7.9657	1	21009	+		41803	27924	28861	28912	47137	47137					0.08139148100440252
LKLELIGSET	10	Unmodified	_LKLELIGSET_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.821347	1101.62814	-0.28299	-0.00015616	-0.36703	-0.00020254	-0.65002	-0.00035869	551.8215299496379	18.705	0.24422	18.574	18.401	18.645	-0.13147	-0.11565	-0.00064785	NaN	40.778	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10733	+		41804	27924	28861	28912							0.08139148100440252
LKLELSPL	8	Unmodified	_LKLELSPL_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.8883361816406	2	456.791861	911.569169	-0.76823	-0.00035092	2.7568	0.0012593	1.9886	0.00090837	456.7929658534417	37.775	0.99198	37.775	37.523	38.515	0					49	28	2	0	0	0	0.027866	1	3095	3095		53.351	0	1	285030	+		41805	22811	28862	28913	47138	47138					0.10984716596760791
LKLELSPL	8	Unmodified	_LKLELSPL_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.88800048828125	2	456.791861	911.569169	-1.0164	-0.00046427	2.971	0.0013571	1.9546	0.00089285	456.79311885422646	37.953	1.2148	37.981	37.595	38.81	0.027275					59	33	2	0	0	0	0.027866	1	3077	3077		94.006	8.6469	1	217020	+		41806	22811	28862	28913	47139	47139					0.10984716596760791
LKLELSPL	8	Unmodified	_LKLELSPL_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.8883361816406	2	456.791861	911.569169	-0.93183	-0.00042565	3.5047	0.0016009	2.5729	0.0011753	456.7932560909046	37.923	0.79818	37.701	37.388	38.187	-0.22149					31	22	2	0	0	0	0.027866	1	3108	3108		60.972	0	1	161530	+		41807	22811	28862	28913	47140	47140					0.10984716596760791
LKLEPFTD	8	Unmodified	_LKLEPFTD_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.25579833984375	2	481.7633	961.512048	-0.53695	-0.00025868	1.0619	0.00051158	0.52494	0.0002529	481.7633670497769	49.018	0.55049	48.738	48.611	49.161	-0.27977					25	14	2	0	0	0	0.027866	1	4878	4878		44.117	12.162	1	701990	+		41808	19939	28863	28914	47141	47141					0.029752493203773156
LKLEPLLS	8	Unmodified	_LKLEPLLS_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.8883972167969	2	456.791861	911.569169	-0.26585	-0.00012144	3.4934	0.0015957	3.2275	0.0014743	456.7932492898724	37.884	0.80628	37.705	37.363	38.17	-0.17929					47	22	3	0	0	0	0.027866	1	3065	3065		73.975	10.668	1	162900	+		41809	23819	28864	28915	47142	47142					0.10984716596760791
LKLEPLLS	8	Unmodified	_LKLEPLLS_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.88763427734375	2	456.791861	911.569169	-0.73808	-0.00033715	3.5039	0.0016005	2.7658	0.0012634	456.7934838653711	38.074	0.94349	37.855	37.424	38.368	-0.21849					45	26	2	0	0	0	0.027866	1	3076	3076		63.306	9.9548	1	178820	+		41810	23819	28864	28915	47143	47143					0.10984716596760791
LKLEPPEEEII	11	Unmodified	_LKLEPPEEEII_					0	0	0		ENSG00000123119|ENST00000417640|NECAB1	ENSG00000123119|ENST00000417640|NECAB1	ENSG00000123119|ENST00000417640|NECAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.88140869140625	3	437.246504	1308.71768	0.42302	0.00018496	1.6554	0.0007238	2.0784	0.00090876	437.2461132201896	39.447	0.33998	39.447	39.254	39.594	0					13	9	2	0	0	0	0.022997	1	3385	3385		104.42	18.562	1	56127			41811	3958	28865	28916	47144	47144					0.07567357989159973
LKLEPPEEEII	11	Unmodified	_LKLEPPEEEII_					0	0	0		ENSG00000123119|ENST00000417640|NECAB1	ENSG00000123119|ENST00000417640|NECAB1	ENSG00000123119|ENST00000417640|NECAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.8815002441406	3	437.246504	1308.71768	-0.79415	-0.00034724	-0.89431	-0.00039103	-1.6885	-0.00073827	437.2461575177569	39.528	0.24317	39.429	39.304	39.547	-0.098755					9	6	2	0	0	0	0.023773	1	3403	3403		84.817	16.032	1	65544			41812	3958	28865	28916	47145	47145					0.07567357989159973
LKLERVTL	8	Unmodified	_LKLERVTL_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29132080078125	2	486.316035	970.617516	-0.37973	-0.00018467	-3.1308	-0.0015226	-3.5106	-0.0017072	486.3128331760277	60.118	0.32656	59.918	59.727	60.053	-0.20016					12	8	2	0	0	0	0.027866	1	6840	6840		45.972	3.5761	1	77950	+		41813	28437	28866	28917	47146	47146					0.13103210236658924
LKLEVNIDRM	10	Unmodified	_LKLEVNIDRM_					0	0	0		ENSG00000167414|ENST00000693335|GNG8	ENSG00000167414|ENST00000693335|GNG8	ENSG00000167414|ENST00000693335|GNG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.89862060546875	3	410.900674	1229.68019	0.99069	0.00040707	-4.3248	-0.0017771	-3.3341	-0.00137	410.8982959784356	18.329	0.69002	18.172	17.953	18.643	-0.15637					21	13	2	0	0	0	1.1228	1	302	302		22.562	1.5294	1	300080			41814	7687	28867	28918	47147	47147					0.07453988242514242
LKLEVNIDRM	10	Unmodified	_LKLEVNIDRM_					0	0	0		ENSG00000167414|ENST00000693335|GNG8	ENSG00000167414|ENST00000693335|GNG8	ENSG00000167414|ENST00000693335|GNG8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	410.900674	1229.68019	3.1408	0.0012906	-8.6668	-0.0035612	-5.526	-0.0022707	410.89745359181586	18.442	0.74796	18.199	17.974	18.722	-0.24256	0.013419	-0.0011612	NaN	22.562	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117880			41815	7687	28867	28918							0.07453988242514242
LKLEVWNN	8	Unmodified	_LKLEVWNN_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.D1400Ifs*6|1|0.26|ENSG00000205038|chr8:109441367-109441367|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3025817871094	2	508.282192	1014.54983	-0.020264	-1.03E-05	2.0712	0.0010527	2.0509	0.0010424	508.2829258659317	54.67	0.72223	54.768	54.328	55.05	0.098015					44	20	3	0	0	0	0.027866	1	5910	5910		32.812	10.853	1	1155100			41816	10401	28868	28919	47148	47148					0.043137603058426066
LKLEVWNN	8	Unmodified	_LKLEVWNN_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.D1400Ifs*6|1|0.26|ENSG00000205038|chr8:109441367-109441367|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.282192	1014.54983	-0.34667	-0.0001762	1.8828	0.000957	1.5361	0.00078079	508.28313488738513	54.838	0.52583	54.838	54.656	55.182	0	0.035213	2.9866E-05	NaN	32.812	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1270700			41817	10401	28868	28919							0.043137603058426066
LKLEVWNN	8	Unmodified	_LKLEVWNN_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.D1400Ifs*6|1|0.26|ENSG00000205038|chr8:109441367-109441367|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.282192	1014.54983	-0.25098	-0.00012757	1.7676	0.00089844	1.5166	0.00077087	508.2829564779899	54.952	0.55764	54.802	54.574	55.132	-0.15036	-0.00074195	-8.7258E-05	NaN	32.812	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1379100			41818	10401	28868	28919							0.043137603058426066
LKLFLNPI	8	Unmodified	_LKLFLNPI_					0	0	0		ENSG00000100565|ENST00000689127|LRRC74A;nc|ENSG00000100565|Q0VAA2|LRRC74A	ENSG00000100565|ENST00000689127|LRRC74A	ENSG00000100565|ENST00000689127|LRRC74A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7734069824219	2	479.310221	956.605889	-0.4028	-0.00019307	-3.6988	-0.0017729	-4.1016	-0.0019659	479.3083314561147	46.558	0.78711	46.364	45.79	46.577	-0.19387					39	21	3	0	0	0	0.027866	1	4518	4518		60.294	16.177	1	1033300			41819	2217	28869	28920	47149	47149					0.12585013213322327
LKLFLSDEEL	10	Unmodified	_LKLFLSDEEL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5364074707031	3	402.892062	1205.65436	-0.75648	-0.00030478	-1.8388	-0.00074084	-2.5953	-0.0010456	402.89135015482617	32.889	0.56207	32.724	32.436	32.998	-0.16565					28	13	3	0	0	0	0.03519	1	2249	2249		16.717	0	1	73003			41820	4760	28870	28921	47150	47150					0.059754172719067356
LKLFTRVAS	9	Unmodified	_LKLFTRVAS_					0	0	0			REV__ENST00000472564.1_1_13:113959885-113960029:+|nuORF	REV__ENST00000472564.1_1_13:113959885-113960029:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.8193969726562	2	517.821484	1033.62842	-1.6951	-0.00087776	-2.517	-0.0013033	-4.2121	-0.0021811	517.8200078149463	91.902	1.1742	91.753	91.268	92.442	-0.1487					75	27	4	0	0	0	0.96322	1	11283	11283		27.882	1.1893	1	1173500	+		41821	33209	28871	28922	47151	47151					0.11294612610936383
LKLGAKKA	8	Unmodified	_LKLGAKKA_					0	0	0			REV__nc|ENSG00000168803|Q6DHV7-2|ADAL	REV__nc|ENSG00000168803|Q6DHV7-2|ADAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.19879150390625	2	414.786913	827.559273	0.024733	1.0259E-05	1.2382	0.0005136	1.263	0.00052386	414.78716837205354	20.699	0.34363	20.531	20.296	20.639	-0.16774					11	6	2	0	0	0	0.027866	1	562	562		3.9852	0	1	23815	+		41822	26294	28872	28923	47152	47152					0.1385957338203525
LKLGGRVK	8	Unmodified	_LKLGGRVK_					0	0	0		ENSG00000100055|ENST00000248901|CYTH4;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000105443|ENST00000452733|CYTH2;ENSG00000008256|ENST00000350796|CYTH3;ENST00000462927.5_1_22:37699411-37707619:+|nuORF	ENSG00000100055|ENST00000248901|CYTH4	ENSG00000100055|ENST00000248901|CYTH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7640686035156	2	435.797812	869.581071	-0.040713	-1.7743E-05	0.85379	0.00037208	0.81308	0.00035434	435.7982237440045	27.029	0.25876	26.872	26.715	26.974	-0.15664					7	5	2	0	0	0	0.027866	1	1415	1415		29.15	11.785	1	26766			41823	839	28873	28924	47153	47153					0.14106378130611574
LKLGKYKH	8	Unmodified	_LKLGKYKH_					0	0	0			REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.8072204589844	2	493.810919	985.607286	0.2963	0.00014632	-2.3874	-0.0011789	-2.0911	-0.0010326	493.8094393899695	99.668	0.42802	99.663	99.388	99.816	-0.0050888					14	9	2	0	0	0	0.027866	1	12655	12655		24.203	3.7209	1	36277	+		41824	31608	28874	28925	47154	47154					0.11390647302073376
LKLGKYKH	8	Unmodified	_LKLGKYKH_					0	0	0			REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.810919	985.607286	0.60355	0.00029804	-3.7512	-0.0018524	-3.1477	-0.0015544	493.8086523313015	99.607	0.39123	99.607	99.313	99.704	0	0.12098	-0.0015296	NaN	24.203	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43192	+		41825	31608	28874	28925							0.11390647302073376
LKLGKYKH	8	Unmodified	_LKLGKYKH_					0	0	0			REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.810919	985.607286	0.2868	0.00014163	-2.2772	-0.0011245	-1.9904	-0.0009829	493.8099370207745	99.517	0.45186	99.382	99.184	99.636	-0.13526	-0.10414	-7.3826E-05	NaN	24.203	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33491	+		41826	31608	28874	28925							0.11390647302073376
LKLGKYKH	8	Unmodified	_LKLGKYKH_					0	0	0			REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.810919	985.607286	0.93544	0.00046193	-1.9494	-0.00096263	-1.0139	-0.0005007	493.8096576627943	99.584	0.43777	99.459	99.203	99.641	-0.12459	-0.026496	0.00024998	NaN	24.203	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25330	+		41827	31608	28874	28925							0.11390647302073376
LKLGKYKH	8	Unmodified	_LKLGKYKH_					0	0	0			REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	REV__ENST00000419821.6_1_12:118704533-118797312:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.810919	985.607286	0.031216	1.5415E-05	-1.9142	-0.00094525	-1.883	-0.00092984	493.80996784231354	99.488	0.45353	99.319	99.243	99.697	-0.16863	-0.16691	0.00028473	NaN	24.203	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27319	+		41828	31608	28874	28925							0.11390647302073376
LKLIIIATK	9	Unmodified	_LKLIIIATK_					0	0	0			REV__ENST00000339950.4_1_1:62914231-62914300:+|nuORF	REV__ENST00000339950.4_1_1:62914231-62914300:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7561950683594	2	506.860078	1011.7056	-0.60138	-0.00030482	2.6862	0.0013615	2.0848	0.0010567	506.8616207159654	34.842	0.29717	34.892	34.723	35.02	0.050255					9	7	2	0	0	0	0.024541	1	2590	2590		15.642	0	1	37959	+		41829	30606	28875	28926	47155	47155					0.20021830827272424
LKLIKVFVL	9	Unmodified	_LKLIKVFVL_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7977294921875	2	536.878271	1071.74199	-0.74149	-0.00039809	3.6239	0.0019456	2.8824	0.0015475	536.8809963624753	65.919	0.15408	65.949	65.852	66.006	0.030106					5	3	2	0	0	0	0.024487	1	7751	7751		24.203	1.1603	1	57157			41830	8371	28876	28927	47156	47156					0.20898707723995358
LKLIQGNNPRV	11	Unmodified	_LKLIQGNNPRV_					0	0	0		ENSG00000183347|ENST00000370456|GBP6	ENSG00000183347|ENST00000370456|GBP6	ENSG00000183347|ENST00000370456|GBP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.3797607421875	2	626.380229	1250.7459	-1.3509	-0.00084619	0.33333	0.00020879	-1.0176	-0.00063739	626.3803519046847	104.49	0.97306	104.36	104.02	105	-0.12928					86	31	4	0	0	0	1.0327	1	13026	13026		14.137	0	1	2188000			41831	9220	28877	28928	47157	47157					0.1305614547973164
LKLIVELEKK	10	Unmodified	_LKLIVELEKK_					0	0	0		ENSG00000179046|ENST00000682553|TRIML2;chr4:188104932-188105180|220|10.44|0.2|5.7|-|ENST00000512729|TRIML2,TRIML2;chr4:188099175-188101056|229|12.55|0.3|5.38|-|ENST00000512729|TRIML2,TRIML2;chr4:188091941-188097061|202|10.38|0.22|5.59|-|ENST00000512729|TRIML2,TRIML2;nc|ENSG00000179046|Q8N7C3-2|TRIML2;ENST00000511771.1_1_4:189020146-189026726:-|nuORF	ENSG00000179046|ENST00000682553|TRIML2	ENSG00000179046|ENST00000682553|TRIML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	404.935713	1211.78531	-0.96212	-0.0003896	-0.55105	-0.00022314	-1.5132	-0.00061274	404.9352001058381	26.563	0.60756	26.4	26.101	26.708	-0.16331					26	15	2	0	0	0	0.03519	1	1353	1353		20.837	5.504	1	312840			41832	394	28878	28929	47158	47158					0.18788852710599713
LKLIVLLSAQD	11	Unmodified	_LKLIVLLSAQD_					0	0	0			REV__ENSG00000182447|ENST00000327928|OTOL1	REV__ENSG00000182447|ENST00000327928|OTOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	3	404.923585	1211.74892	0.50474	0.00020438	-3.0148	-0.0012208	-2.51	-0.0010164	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.0648	1	1291	1291		21.032	1.7696	1	35253000	+		41833	27475	28879	28930	47159	47159					0.15151975813864738
LKLKLGLTL	9	Unmodified	_LKLKLGLTL_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;ENST00000462656.5_1_10:134180160-134188743:+|nuORF;ENST00000475747.5_1_10:134165051-134188743:+|nuORF	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2875061035156	2	499.852253	997.689953	0.98496	0.00049233	-1.2233	-0.00061148	-0.23837	-0.00011915	499.85152287816175	55.47	0.64303	55.47	55.249	55.892	0					25	17	2	0	0	0	0.024323	1	6151	6151		35.618	0	1	266740			41834	6050	28880	28931	47160	47160					0.19101544310228746
LKLKLGLTL	9	Unmodified	_LKLKLGLTL_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;ENST00000462656.5_1_10:134180160-134188743:+|nuORF;ENST00000475747.5_1_10:134165051-134188743:+|nuORF	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.852253	997.689953	-0.92986	-0.00046479	0.5522	0.00027602	-0.37766	-0.00018877	499.85247493768105	55.763	0.43557	55.606	55.348	55.783	-0.15655	0.079767	0.0004315	NaN	35.618	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198550			41835	6050	28880	28931							0.19101544310228746
LKLKLGLTL	9	Unmodified	_LKLKLGLTL_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;ENST00000462656.5_1_10:134180160-134188743:+|nuORF;ENST00000475747.5_1_10:134165051-134188743:+|nuORF	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.852253	997.689953	-0.081544	-4.076E-05	-0.41274	-0.00020631	-0.49428	-0.00024707	499.8519230283025	55.833	0.32874	55.617	55.409	55.737	-0.21607	0.090466	-0.00053316	NaN	35.618	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204250			41836	6050	28880	28931							0.19101544310228746
LKLKLGLTL	9	Unmodified	_LKLKLGLTL_					0	0	0		nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27;ENST00000462656.5_1_10:134180160-134188743:+|nuORF;ENST00000475747.5_1_10:134165051-134188743:+|nuORF	nc|ENSG00000148814|Q9C0I9-2|LRRC27	nc|ENSG00000148814|Q9C0I9-2|LRRC27	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.852253	997.689953	-1.4961	-0.00074781	0.96335	0.00048153	-0.53271	-0.00026628	499.8526350493117	55.843	0.47751	55.628	55.373	55.851	-0.21551	0.10145	0.00084252	NaN	35.618	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163180			41837	6050	28880	28931							0.19101544310228746
LKLKMPTK	8	Unmodified	_LKLKMPTK_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29217529296875	2	479.809531	957.604509	0.3067	0.00014716	2.3379	0.0011218	2.6446	0.0012689	479.8144348102416	31.621	0.30325	31.38	31.221	31.524	-0.24109					18	7	3	0	0	0	0.027866	1	2111	2111		47.916	12.715	1	68495			41838	4536	28881	28932	47161	47161					0.12401055852922127
LKLKQMLNK	9	Unmodified	_LKLKQMLNK_					0	0	0			REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2658081054688	2	558.352094	1114.68964	-0.60585	-0.00033828	-2.9321	-0.0016372	-3.538	-0.0019754	558.3503937272345	83.803	0.94837	83.83	83.257	84.206	0.02655					35	21	2	0	0	0	0.024427	1	10412	10412		42.396	8.2236	1	56149	+		41839	19084	28882	28933	47162	47162					0.1368780131872427
LKLKSSDS	8	Unmodified	_LKLKSSDS_					0	0	0		nc|ENSG00000147526|O75410-7|TACC1	nc|ENSG00000147526|O75410-7|TACC1	nc|ENSG00000147526|O75410-7|TACC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.2518615722656	2	439.2531	876.491647	-0.6487	-0.00028495	-0.62889	-0.00027624	-1.2776	-0.00056119	439.25274302714246	90.189	0.95551	90.064	89.589	90.544	-0.12512					58	22	4	0	0	0	1.0574	1	11058	11058		25.574	3.6142	1	1623900			41840	18364	28883	28934	47163	47163					0.04846078660580133
LKLKTFYRCHW	11	Unmodified	_LKLKTFYRCHW_					0	0	0		ENST00000563328.4_1_16:72822707-72822839:+|nuORF	ENST00000563328.4_1_16:72822707-72822839:+|nuORF	ENST00000563328.4_1_16:72822707-72822839:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.9019775390625	3	498.939463	1493.79656	0.00026605	1.3274E-07	4.084	0.0020377	4.0843	0.0020378	498.9412795937317	43.827	0.43634	43.857	43.593	44.029	0.030827					13	11	2	0	0	0	0.024759	1	4072	4072		29.551	6.1728	1	146600			41841	16865	28884	28935	47164	47164					0.06941351533077977
LKLLDLRND	9	Unmodified	_LKLLDLRND_					0	0	0			REV__IPPK-IARS|1|fusion	REV__IPPK-IARS|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2924194335938	2	550.327131	1098.63971	0.30569	0.00016823	0.37044	0.00020386	0.67613	0.00037209	550.3272274200109	40.626	0.64128	40.503	40.301	40.943	-0.12317					32	17	3	0	0	0	0.024367	1	3580	3580		44.377	10.205	1	512420	+		41842	28161	28885	28936	47165	47165					0.09433389914420331
LKLLELGANKM	11	Unmodified	_LKLLELGANKM_					0	0	0		nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1;ENST00000465832.5_1_7:117008647-117066986:-|nuORF;ENST00000463182.5_1_7:117008647-117066914:-|nuORF	nc|ENSG00000154438|Q8WWH4-2|ASZ1	nc|ENSG00000154438|Q8WWH4-2|ASZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.52471923828125	3	410.581053	1228.72133	-0.4207	-0.00017273	1.8923	0.00077692	1.4716	0.00060419	410.915882374745	55.076	0.1114	54.93	54.837	54.948	-0.14609					4	2	2	0	0	0	0.024746	1	5890	5890		15.921	7.227	1	55571			41843	6410	28886	28937	47166	47166					0.11611749282019446
LKLLFKVAT	9	Unmodified	_LKLLFKVAT_					0	0	0			REV__nc|ENSG00000175497|Q8N608-3|DPP10	REV__nc|ENSG00000175497|Q8N608-3|DPP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.80810546875	2	516.844428	1031.6743	-0.19119	-9.8817E-05	-0.0092652	-4.7886E-06	-0.20046	-0.00010361	516.844674549302	93.721	0.37332	93.721	93.515	93.888	0					13	8	2	0	0	0	0.024457	1	11883	11883		29.15	0	1	59560	+		41844	36960	28887	28938	47167	47167					0.1597325779316634
LKLLGSCVLK	10	Unmodified	_LKLLGSCVLK_					0	0	0			REV__ENST00000503240.5_1_5:148743537-148748214:+|nuORF	REV__ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7972412109375	2	537.341195	1072.66784	-0.66234	-0.0003559	-2.7701	-0.0014885	-3.4324	-0.0018444	537.3396656071885	77.139	0.67548	77.153	77.021	77.696	0.013504					18	15	2	0	0	0	0.03519	1	9522	9522		54.776	15.523	1	152890	+		41845	24442	28888	28939	47168	47168					0.13440996570125208
LKLLHLILA	9	Unmodified	_LKLLHLILA_					0	0	0		ENST00000393110.6_1_2:120021396-120021600:+|nuORF	ENST00000393110.6_1_2:120021396-120021600:+|nuORF	ENST00000393110.6_1_2:120021396-120021600:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3236083984375	2	517.360245	1032.70594	1.0804	0.00055898	-2.7798	-0.0014381	-1.6993	-0.00087916	517.3581744895023	63.755	0.10848	63.755	63.701	63.81	0					4	2	2	0	0	0	0.024294	1	7475	7475		37.159	14.117	1	89496			41846	13439	28889	28940	47169	47169					0.19089250547131087
LKLLKLVY	8	Unmodified	_LKLLKLVY_					0	0	0			REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.3232116699219	2	495.341521	988.668489	-0.41863	-0.00020736	-2.0337	-0.0010074	-2.4523	-0.0012147	495.34061142624194	64.383	0.47777	64.121	63.901	64.379	-0.2626					24	12	3	0	0	0	0.027866	1	7530	7530		14.664	5.8418	1	328700	+		41847	22992	28890	28941	47170	47170					0.17370159281495035
LKLLKLVY	8	Unmodified	_LKLLKLVY_					0	0	0			REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.3233642578125	2	495.341521	988.668489	-0.54761	-0.00027126	-2.1692	-0.0010745	-2.7168	-0.0013458	495.3407514369675	64.313	0.19548	64.086	64.027	64.223	-0.22773					7	4	2	0	0	0	0.027866	1	7316	7316		15.636	0.97212	1	133260	+		41848	22992	28890	28941	47171	47171					0.17370159281495035
LKLLKMII	8	Unmodified	_LKLLKMII_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29205322265625	2	486.337924	970.661295	-0.10378	-5.0471E-05	3.0927	0.0015041	2.9889	0.0014536	486.33945170565477	81.854	0.1576	81.724	81.625	81.783	-0.13075					5	3	2	0	0	0	0.027866	1	10179	10179		13.775	4.953	1	103900			41849	3532	28891	28942	47172	47172					0.17479103409436902
LKLLPHQP	8	Unmodified	_LKLLPHQP_					0	0	0		nc|ENSG00000215859|A8MUH7-2|PDZK1P1;ENST00000401008.6_1_1:147468098-147482410:-|nuORF;nc|ENSG00000215859|A8MUH7|PDZK1P1;ENST00000425209.1_1_1:147466535-147481815:-|nuORF;ENSG00000174827|ENST00000417171|PDZK1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	nc|ENSG00000215859|A8MUH7-2|PDZK1P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7459716796875	2	473.297645	944.580737	0.51144	0.00024206	-1.3768	-0.00065163	-0.86534	-0.00040956	473.2966481550085	57.373	0.72595	57.373	56.841	57.567	0					34	19	3	0	0	0	0.027866	1	6406	6406		25.45	0	1	295270			41850	8501	28892	28943	47173	47173					0.10622958410738192
LKLLRSSTL	9	Unmodified	_LKLLRSSTL_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.27001953125	2	515.834591	1029.65463	-0.50434	-0.00026016	0.39263	0.00020253	-0.11171	-5.7625E-05	515.8347979112032	51.296	0.743	51.147	50.897	51.64	-0.14916					37	20	3	0	0	0	0.024292	1	5396	5396		49.442	7.0454	1	624730	+		41851	22195	28893	28944	47174	47174					0.14098881782433637
LKLMHGIIKGT	11	Unmodified	_LKLMHGIIKGT_					0	0	0			REV__ENSG00000146070|ENST00000274793|PLA2G7	REV__ENSG00000146070|ENST00000274793|PLA2G7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8717651367188	2	605.870651	1209.72675	-0.92863	-0.00056263	3.1491	0.0019079	2.2205	0.0013453	605.8723603924029	98.583	1.08	98.583	98.233	99.313	0					66	24	4	0	0	0	1.0238	1	12635	12635		31.53	9.5699	1	1252900	+		41852	24457	28894	28945	47175	47175					0.13027472864473566
LKLMHGIIKGT	11	Unmodified	_LKLMHGIIKGT_					0	0	0			REV__ENSG00000146070|ENST00000274793|PLA2G7	REV__ENSG00000146070|ENST00000274793|PLA2G7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8718872070312	2	605.870651	1209.72675	0.74452	0.00045108	1.7411	0.0010549	2.4856	0.001506	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	1.0483	1	12277	12277		25.574	2.0514	1	1081300	+		41853	24457	28894	28945	47176	47176					0.13027472864473566
LKLMTAKLL	9	Oxidation (M)	_LKLM(Oxidation (M))TAKLL_		LKLM(1)TAKLL		LKLM(100)TAKLL	0	0	1		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.8213500976562	2	523.835746	1045.65694	0.10102	5.2919E-05	2.9631	0.0015522	3.0641	0.0016051	523.8373959549635	48.398	0.35311	48.212	48.015	48.368	-0.18684					14	9	2	0	0	0	0.023061	1	4799	4799		101.6	27.626	1	133360			41854	9607	28895	28946	47177	47177		396			0.13593594195867809
LKLNSPLPK	9	Unmodified	_LKLNSPLPK_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.78497314453125	2	505.32386	1008.63317	1.422	0.00071858	-1.4158	-0.00071543	0.0062406	3.1535E-06	505.32300070855837	63.898	0.50182	63.898	63.666	64.168	0					32	13	3	0	0	0	0.024263	1	7478	7478		60.972	4.2509	1	966690	+		41855	26976	28896	28947	47178	47178					0.12919496753704607
LKLNTDEFI	9	Unmodified	_LKLNTDEFI_					0	0	0			REV__ENSG00000196396|ENST00000371621|PTPN1	REV__ENSG00000196396|ENST00000371621|PTPN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7646484375	2	546.800414	1091.58628	-0.74595	-0.00040789	-0.24152	-0.00013206	-0.98747	-0.00053995	546.8001618272878	67.186	0.68008	67.186	66.926	67.606	0					30	16	3	0	0	0	0.024261	1	8060	8060		54.776	1.8396	1	1109800	+		41856	28175	28897	28948	47179	47179					0.04414592411899321
LKLNVKTF	8	Unmodified	_LKLNVKTF_					0	0	0			REV__ENST00000295087.12_1_2:152658001-152658127:-|nuORF	REV__ENST00000295087.12_1_2:152658001-152658127:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.596923828125	2	481.805303	961.596052	-0.32982	-0.00015891	0.12006	5.7845E-05	-0.20976	-0.00010107	481.8051530366005	26.145	0.48788	25.976	25.774	26.262	-0.16816					20	14	2	0	0	0	0.027866	1	1290	1290		20.482	0	1	203350	+		41857	29970	28898	28949	47180	47180					0.11371825207936581
LKLPFPLN	8	Unmodified	_LKLPFPLN_					0	0	0			REV__nc|ENSG00000230246|P0DKV0|SPATA31C1;REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.76470947265625	2	471.294571	940.574589	-0.070166	-3.3069E-05	-3.3601	-0.0015836	-3.4303	-0.0016167	471.29286930714665	35.799	0.40311	35.586	35.314	35.717	-0.21246					19	10	3	0	0	0	0.027866	1	2751	2751		40.573	15.122	1	120510	+		41858	36975;27795	28899	28950	47181	47181					0.10192440179230289
LKLPMCQS	8	Unmodified	_LKLPMCQS_					0	0	0			REV__nc|ENSG00000105722|P50548-2|ERF	REV__nc|ENSG00000105722|P50548-2|ERF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.2222595214844	2	460.240624	918.466695	-0.35505	-0.00016341	0.55324	0.00025462	0.19818	9.1213E-05	460.24106111452403	42.728	0.15087	42.502	42.447	42.597	-0.22597					5	3	2	0	0	0	0.027866	1	3861	3861		18.324	6.1176	1	45773	+		41859	21559	28900	28951	47182	47182					0.004199842619868832
LKLQPIDRCL	10	Unmodified	_LKLQPIDRCL_					0	0	0			REV__ENSG00000153060|ENST00000283025|TEKT5	REV__ENSG00000153060|ENST00000283025|TEKT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	400.237398	1197.69036	1.0536	0.0004217	1.9306	0.00077269	2.9842	0.0011944	400.23801724804787	22.818	0.83407	22.629	21.959	22.793	-0.18894					22	17	2	0	0	0	0.03519	1	854	854		20.03	0	1	72362	+		41860	24881	28901	28952	47183	47183					0.09942595967754642
LKLQSHPTV	9	Unmodified	_LKLQSHPTV_					0	0	0		ENST00000568920.1_1_16:57246991-57250108:+|nuORF;ENSG00000159579|ENST00000394420|RSPRY1	ENST00000568920.1_1_16:57246991-57250108:+|nuORF	ENST00000568920.1_1_16:57246991-57250108:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2562561035156	2	511.803291	1021.59203	-1.2504	-0.00063994	0.30503	0.00015612	-0.94533	-0.00048382	511.80297943826406	37.803	0.31424	37.721	37.636	37.95	-0.082516					11	8	2	0	0	0	0.024405	1	3115	3115		27.882	0	1	69487			41861	6753	28902	28953	47184	47184					0.08209735714240196
LKLRASVS	8	Unmodified	_LKLRASVS_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2796936035156	2	437.279452	872.544351	0.23314	0.00010195	-0.078018	-3.4116E-05	0.15512	6.7832E-05	437.2792778617901	21.41	0.90859	21.233	20.967	21.875	-0.17721					42	18	4	0	0	0	0.74904	1	678	678		63.306	9.9548	1	775250			41862	6400	28903	28954	47185	47185					0.10298081514042678
LKLRASVS	8	Unmodified	_LKLRASVS_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2797546386719	2	437.279452	872.544351	-0.75069	-0.00032826	0.71597	0.00031308	-0.034722	-1.5183E-05	437.2796748316289	21.599	0.91922	21.386	21.069	21.988	-0.2128					42	18	4	0	0	0	0.87148	1	671	671		53.351	0	1	1348700			41863	6400	28903	28954	47186	47186					0.10298081514042678
LKLRFFYLPL	10	Unmodified	_LKLRFFYLPL_					0	0	0			REV__ENST00000353275.9_2_4:1980855-1981176:+|nuORF	REV__ENST00000353275.9_2_4:1980855-1981176:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.881591796875	3	437.272548	1308.79581	-0.81421	-0.00035603	2.6586	0.0011625	1.8444	0.0008065	437.2737060142825	39.719	0.9179	39.607	39.291	40.208	-0.11223					68	24	4	0	0	0	0.03519	1	3379	3379		41.427	0	1	740570	+		41864	30741	28904	28955	47187	47187					0.15376880155690742
LKLRKGGG	8	Unmodified	_LKLRKGGG_					0	0	0			REV__ENST00000500537.2_1_11:112831441-112833979:-|nuORF	REV__ENST00000500537.2_1_11:112831441-112833979:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.7616271972656	2	414.774337	827.534121	0.27998	0.00011613	-1.5185	-0.00062983	-1.2385	-0.00051371	414.7752873504602	87.823	0.4032	87.686	87.459	87.862	-0.13734					13	9	2	0	0	0	0.027866	1	10687	10687		7.6903	0	1	104500	+		41865	33906	28905	28956	47188	47188					0.1134551857948054
LKLRLPPE	8	Unmodified	_LKLRLPPE_					0	0	0		ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1;ENST00000579065.1_1_17:8052750-8054072:-|nuORF	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7798156738281	2	483.310752	964.606951	-0.17299	-8.3607E-05	-0.42877	-0.00020723	-0.60176	-0.00029084	483.3104186118343	49.423	0.98746	49.27	48.935	49.922	-0.15277					45	26	2	0	0	0	0.027866	1	5164	5164		10.265	0	1	2052000			41866	8869	28906	28957	47189	47189					0.12323227582226082
LKLRRGTK	8	Unmodified	_LKLRRGTK_					0	0	0			REV__nc|ENSG00000101190|Q9UL49-2|TCFL5	REV__nc|ENSG00000101190|Q9UL49-2|TCFL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.3109130859375	2	486.327268	970.639983	0.011039	5.3685E-06	1.2614	0.00061343	1.2724	0.0006188	486.32764332368174	75.023	0.68453	74.764	74.492	75.177	-0.25887					19	16	2	0	0	0	0.027866	1	9165	9165		20.947	0	1	161560	+		41867	21196	28907	28958	47190	47190					0.15348854424939873
LKLSGLSI	8	Unmodified	_LKLSGLSI_					0	0	0		ENST00000318238.8_1_7:92763540-92763603:-|nuORF	ENST00000318238.8_1_7:92763540-92763603:-|nuORF	ENST00000318238.8_1_7:92763540-92763603:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.7715148925781	2	415.770929	829.527304	-0.30223	-0.00012566	0.17212	7.1561E-05	-0.13011	-5.4097E-05	415.7708758660752	45.033	0.50181	44.822	44.554	45.056	-0.21109					28	12	3	0	0	0	0.71833	1	4230	4230		65.803	0	1	994620			41868	12171	28908	28959	47191	47191					0.10572160908247952
LKLSGLSI	8	Unmodified	_LKLSGLSI_					0	0	0		ENST00000318238.8_1_7:92763540-92763603:-|nuORF	ENST00000318238.8_1_7:92763540-92763603:-|nuORF	ENST00000318238.8_1_7:92763540-92763603:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	415.770929	829.527304	-1.0229	-0.00042529	0.99461	0.00041353	-0.028289	-1.1762E-05	415.771160395524	44.893	0.423	44.794	44.554	44.977	-0.099445	-0.012507	0.00046531	NaN	65.803	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523690			41869	12171	28908	28959							0.10572160908247952
LKLSGLSI	8	Unmodified	_LKLSGLSI_					0	0	0		ENST00000318238.8_1_7:92763540-92763603:-|nuORF	ENST00000318238.8_1_7:92763540-92763603:-|nuORF	ENST00000318238.8_1_7:92763540-92763603:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	415.770929	829.527304	-0.49265	-0.00020483	0.41295	0.00017169	-0.079702	-3.3138E-05	415.77101442581244	45.056	0.46527	44.804	44.59	45.055	-0.25252	-0.0029966	-1.8372E-05	NaN	65.803	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729520			41870	12171	28908	28959							0.10572160908247952
LKLSICLHK	9	Unmodified	_LKLSICLHK_					0	0	0			REV__ENST00000269033.7_1_17:27956058-27956139:-|nuORF	REV__ENST00000269033.7_1_17:27956058-27956139:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.2715454101562	2	527.825712	1053.63687	-0.18359	-9.6902E-05	2.2824	0.0012047	2.0988	0.0011078	528.3273721226115	46.584	1.1587	46.487	46.259	47.418	-0.096649					40	31	2	0	0	0	0.024523	1	4608	4608		29.15	9.1528	1	510290	+		41871	29785	28909	28960	47192	47192					0.11219843255889828
LKLSNVHTI	9	Unmodified	_LKLSNVHTI_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8;REV__ENST00000446228.5_1_2:162758621-162834241:+|nuORF	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2880859375	2	512.811116	1023.60768	-0.14533	-7.4528E-05	-0.27894	-0.00014304	-0.42427	-0.00021757	512.8109403164948	55.654	0.83771	55.498	55.194	56.031	-0.15601					38	22	3	0	0	0	0.023239	1	6137	6137		64.207	0	1	1145800	+		41872	20160;24323	28910	28961	47193	47193					0.09682022231288556
LKLSSLHAL	9	Unmodified	_LKLSSLHAL_					0	0	0			REV__ENSG00000198812|ENST00000361484|LRRC10	REV__ENSG00000198812|ENST00000361484|LRRC10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2971496582031	2	491.30821	980.601866	0.20833	0.00010236	-0.77846	-0.00038246	-0.57013	-0.00028011	491.30749988267206	47.505	0.26286	47.318	47.161	47.423	-0.18684					10	6	2	0	0	0	0.024523	1	4650	4650		29.15	0	1	138020	+		41873	28486	28911	28962	47194	47194					0.11078923719594513
LKLTGAIAN	9	Unmodified	_LKLTGAIAN_					0	0	0			REV__nc|ENSG00000159842|Q12979-4|ABR;REV__nc|ENSG00000159842|Q12979-3|ABR;REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2684326171875	2	450.779285	899.544017	-1.0569	-0.00047643	0.36338	0.00016381	-0.69352	-0.00031263	450.7793361030251	37.86	0.51175	37.86	37.559	38.071	0					38	14	4	0	0	0	0.024447	1	3161	3161		32.812	0	1	3752900	+		41874	27880;25277;36831	28912	28963	47195	47195					0.09022661794165288
LKLTKHIK	8	Unmodified	_LKLTKHIK_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2765808105469	2	490.834394	979.654236	-0.32148	-0.00015779	0.11994	5.8872E-05	-0.20154	-9.892E-05	490.83434823314326	46.62	0.60193	46.672	46.308	46.91	0.051395					40	16	3	0	0	0	0.027866	1	4508	4508		18.324	0	1	644490			41875	2448	28913	28964	47196	47196					0.16359506853223138
LKLTKHIK	8	Unmodified	_LKLTKHIK_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.834394	979.654236	0.21802	0.00010701	-0.60142	-0.0002952	-0.3834	-0.00018818	490.8339858414173	46.686	0.69531	46.686	46.308	47.003	0	0.13656	-0.0005317	NaN	7.1934	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710050			41876	2448	28913	28964							0.16359506853223138
LKLTKHIK	8	Unmodified	_LKLTKHIK_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.834394	979.654236	-0.45137	-0.00022155	0.35558	0.00017453	-0.095786	-4.7015E-05	490.83441572375835	46.817	0.62322	46.664	46.276	46.899	-0.15301	0.11413	0.00040776	NaN	7.1934	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589590			41877	2448	28913	28964							0.16359506853223138
LKLTKHIK	8	Unmodified	_LKLTKHIK_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.834394	979.654236	-0.41598	-0.00020418	0.24501	0.00012026	-0.17097	-8.3917E-05	490.8344273289644	46.503	0.56718	46.407	46.078	46.645	-0.096649	-0.14296	0.00029922	NaN	7.1934	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1213100			41878	2448	28913	28964							0.16359506853223138
LKLTKHIK	8	Unmodified	_LKLTKHIK_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.834394	979.654236	0.047911	2.3516E-05	-0.3314	-0.00016266	-0.28349	-0.00013915	490.83409065017435	46.775	0.5762	46.506	46.153	46.73	-0.26939	-0.043908	-0.00026663	NaN	7.1934	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1200300			41879	2448	28913	28964							0.16359506853223138
LKLTKHIK	8	Unmodified	_LKLTKHIK_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.834394	979.654236	-0.36982	-0.00018152	-0.079703	-3.9121E-05	-0.44953	-0.00022064	490.8342153209491	46.558	0.72175	46.364	46.128	46.85	-0.19387	-0.18562	-1.9544E-05	NaN	7.1934	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1428100			41880	2448	28913	28964							0.16359506853223138
LKLVFQLN	8	Unmodified	_LKLVFQLN_					0	0	0		ENST00000532790.5_1_11:58916298-58916346:+|nuORF	ENST00000532790.5_1_11:58916298-58916346:+|nuORF	ENST00000532790.5_1_11:58916298-58916346:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7925109863281	2	487.805303	973.596052	-1.1738	-0.00057258	1.5887	0.00077498	0.41492	0.0002024	487.8062667752468	35.891	0.20454	35.848	35.726	35.931	-0.042454					6	5	2	0	0	0	0.027866	1	2776	2776		25.45	1.2474	1	93030			41881	16299	28914	28965	47197	47197					0.10819825207943268
LKLVGVQYSL	10	Unmodified	_LKLVGVQYSL_					0	0	0		ENST00000298999.7_2_10:99923151-99968013:+|nuORF	ENST00000298999.7_2_10:99923151-99968013:+|nuORF	ENST00000298999.7_2_10:99923151-99968013:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.309814453125	2	560.342249	1118.66995	-1.0848	-0.00060785	3.2065	0.0017967	2.1217	0.0011889	560.3443974873819	51.44	0.33916	51.527	51.375	51.715	0.087006					13	9	2	0	0	0	0.03519	1	5358	5358		29.17	2.374	1	212320			41882	11878	28915	28966	47198	47198					0.11535748579603933
LKLVKDALL	9	Unmodified	_LKLVKDALL_					0	0	0			REV__ENSG00000154174|ENST00000284320|TOMM70	REV__ENSG00000154174|ENST00000284320|TOMM70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8127746582031	2	506.841885	1011.66922	-0.12682	-6.4276E-05	-0.26312	-0.00013336	-0.38993	-0.00019763	506.84157087985676	54.731	0.96474	54.829	54.558	55.523	0.098015					75	26	5	0	0	0	0.018983	1	5914	5914		93.195	0	1	4389800	+		41883	24945	28916	28967	47199	47199					0.16384953930560187
LKLVLLAL	8	Unmodified	_LKLVLLAL_					0	0	0		nc|ENSG00000135870|Q5TC82-2|RC3H1;ENSG00000135870|ENST00000367696|RC3H1;RC3H1|p.E212Q|1|0.07|ENSG00000135870|chr1:173982861-173982861|C/G|missense_variant;RC3H1|p.L453Sfs*18|1|0.09|ENSG00000135870|chr1:173965099-173965100|-/AAAAATAGAT|frameshift_variant;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2;RC3H1|p.Q619Gfs*18|1|0.07|ENSG00000135870|chr1:173962072-173962073|-/AGATTCCACC|frameshift_variant;nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;ENSG00000056586|ENST00000357244|RC3H2	nc|ENSG00000135870|Q5TC82-2|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7874755859375	2	441.822964	881.631375	-0.74659	-0.00032986	3.6916	0.001631	2.945	0.0013012	441.82373137930875	40.663	0.22032	40.522	40.448	40.669	-0.14107					6	5	2	0	0	0	0.027866	1	3533	3533		8.8223	0	1	59820			41884	4944	28917	28968	47200	47200					0.1858248773575042
LKLVNILVQ	9	Unmodified	_LKLVNILVQ_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.764404296875	2	520.347335	1038.68012	-0.96045	-0.00049977	1.0719	0.00055776	0.11146	5.7997E-05	520.34777792467	83.406	1.4054	83.432	83.257	84.663	0.026558					55	32	2	0	0	0	0.024541	1	10424	10424		16.473	0	1	167610			41885	186	28918	28969	47201	47201					0.16232356304840323
LKLVPHKIR	9	Unmodified	_LKLVPHKIR_					0	0	0			REV__ENST00000396307.6_1_15:55497313-55497613:-|nuORF	REV__ENST00000396307.6_1_15:55497313-55497613:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.3259887695312	2	552.374218	1102.73388	-1.1015	-0.00060846	-2.3024	-0.0012718	-3.4039	-0.0018802	552.3726557595911	53.968	0.11728	53.832	53.75	53.867	-0.13617					5	3	2	0	0	0	0.024541	1	5683	5683		12.207	0	1	169470	+		41886	31729	28919	28970	47202	47202					0.18662573527194581
LKLWKPVK	8	Unmodified	_LKLWKPVK_					0	0	0			REV__ENST00000577733.5_1_17:79966858-79975195:+|nuORF	REV__ENST00000577733.5_1_17:79966858-79975195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2716979980469	2	506.339313	1010.66407	-0.82213	-0.00041628	-3.3605	-0.0017016	-4.1826	-0.0021178	506.33751176853144	31.499	0.70284	31.499	31.047	31.749	0					29	16	2	0	0	0	0.027866	1	2084	2084		38.806	0	1	136510	+		41887	26393	28920	28971	47203	47203					0.15916694858606206
LKLYVYNTDT	10	Unmodified	_LKLYVYNTDT_					0	0	0		ENST00000488928.1_1_2:171806716-171807969:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	ENST00000488928.1_1_2:171806716-171807969:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.52471923828125	3	410.551928	1228.63395	-0.46177	-0.00018958	-2.6774	-0.0010992	-3.1391	-0.0012888	410.55138769451713	55.077	0.50246	54.931	54.686	55.188	-0.14609					15	13	2	0	0	0	0.03519	1	5890	5890		14.086	4.3804	1	107760			41888	3490	28921	28972	47204	47204					0.028782466120901518
LKMEKNGK	8	Unmodified	_LKMEKNGK_					0	0	0			REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF	REV__ENST00000569415.1_1_15:30516861-30517158:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.2701721191406	2	474.27077	946.526987	-0.41365	-0.00019618	1.3271	0.00062943	0.91349	0.00043324	474.27156716822003	24.143	0.56744	24.096	23.741	24.308	-0.047148					28	12	3	0	0	0	0.6248	1	999	999		73.975	5.49	1	2352100	+		41889	21013	28922	28973	47205	47205					0.051584179167321054
LKMERSFF	8	Unmodified	_LKMERSFF_					0	0	0		ENSG00000162873|ENST00000367155|KLHDC8A	ENSG00000162873|ENST00000367155|KLHDC8A	ENSG00000162873|ENST00000367155|KLHDC8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.3109741210938	2	529.278595	1056.54264	0.05312	2.8115E-05	-1.7819	-0.00094311	-1.7288	-0.000915	529.2771328293767	57.361	0.38079	57.186	56.964	57.345	-0.1749					23	9	3	0	0	0	0.027866	1	6383	6383		50.025	2.1089	1	419820			41890	7001	28923	28974	47206	47206					0.016627044337838015
LKMHNNMLKK	10	Unmodified	_LKMHNNMLKK_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.5231018066406	3	419.570382	1255.68932	0.8541	0.00035835	-0.12337	-5.1761E-05	0.73073	0.00030659	419.5702972082516	19.53	0.3491	19.33	19.106	19.455	-0.2001					9	6	2	0	0	0	0.03519	1	407	407		20.837	6.1435	1	26000	+		41891	24144	28924	28975	47207	47207					0.0717005832718769
LKMIVSFTI	9	Unmodified	_LKMIVSFTI_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.7753295898438	2	526.314646	1050.61474	-1.2441	-0.00065481	1.0911	0.00057428	-0.153	-8.0528E-05	526.3151651549035	80.535	1.0415	80.383	79.758	80.799	-0.15169					36	24	2	0	0	0	0.023837	1	9960	9960		64.207	12.872	1	106360			41892	8096	28925	28976	47208	47208					0.09145618787488274
LKMKDVQEQK	10	Unmodified	_LKMKDVQEQK_					0	0	0			REV__ENSG00000180263|ENST00000343958|FGD6	REV__ENSG00000180263|ENST00000343958|FGD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.2315673828125	3	416.232312	1245.67511	0.055213	2.2981E-05	-1.8714	-0.00077895	-1.8162	-0.00075597	416.2315842412846	20.954	2.1418	20.777	20.336	22.478	-0.17721					111	44	6	0	0	0	1.0447	1	623	623		40.058	3.7405	1	3025500	+		41893	27325	28926	28977	47209	47209					0.06209684379905411
LKMKGPEP	8	Unmodified	_LKMKGPEP_					0	0	0		nc|ENSG00000147257|P51654-3|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.28497314453125	2	450.254588	898.494624	0.21362	9.6184E-05	-2.7658	-0.0012453	-2.5522	-0.0011491	450.25537446599833	35.062	0.3243	34.846	34.589	34.913	-0.21556					12	7	2	0	0	0	0.027866	1	2597	2597		16.473	0	1	78184			41894	18362	28927	28978	47210	47210					0.04131630513734308
LKMLALKT	8	Unmodified	_LKMLALKT_					0	0	0		ENST00000600795.1_1_11:77885130-77885199:+|nuORF	ENST00000600795.1_1_11:77885130-77885199:+|nuORF	ENST00000600795.1_1_11:77885130-77885199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2580261230469	2	459.296256	916.57796	-1.0021	-0.00046027	-3.2737	-0.0015036	-4.2758	-0.0019639	459.29467309717865	37.815	0.37695	37.596	37.311	37.688	-0.2195					10	9	2	0	0	0	0.027866	1	3073	3073		6.7355	2.7503	1	75649			41895	17504	28928	28979	47211	47211					0.11633366961575575
LKMLALLKRK	10	Unmodified	_LKMLALLKRK_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B;GATAD2B|p.S250Rfs*13|1|0.1|ENSG00000143614|chr1:153817524-153817525|-/GCCCT|frameshift_variant;GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	ENSG00000143614|ENST00000368655|GATAD2B;GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.23870849609375	3	405.277416	1212.81042	0.79057	0.0003204	-2.1738	-0.00088098	-1.3832	-0.00056058	405.6110527141066	27.161	0.1416	27.161	27.109	27.251	0					5	3	2	0	0	0	0.03519	1	1452	1452		29.17	0	1	29171			41896	5671;17672	28929	28980	47212	47212					0.21252629032187542
LKMLHIIE	8	Unmodified	_LKMLHIIE_					0	0	0		ENST00000469911.1_1_3:182328694-182329198:+|nuORF	ENST00000469911.1_1_3:182328694-182329198:+|nuORF	ENST00000469911.1_1_3:182328694-182329198:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8003845214844	2	498.799163	995.583773	-0.56117	-0.00027991	3.2761	0.0016341	2.7149	0.0013542	498.8007358679737	28.693	1.0069	28.688	28.374	29.381	-0.0042019					60	24	4	0	0	0	0.91239	1	1694	1694		50.025	0	1	2801300			41897	14920	28930	28981	47213	47213					0.08580465473255572
LKMMGRLEL	9	Unmodified	_LKMMGRLEL_					0	0	0		ENST00000246071.7_1_20:16721543-16721627:+|nuORF	ENST00000246071.7_1_20:16721543-16721627:+|nuORF	ENST00000246071.7_1_20:16721543-16721627:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.8115234375	2	545.809205	1089.60386	-0.49619	-0.00027083	2.2472	0.0012265	1.751	0.00095569	545.8102985256902	53.748	0.98847	53.748	53.404	54.393	0					76	27	4	0	0	0	0.33245	1	5834	5834		71.296	7.0884	1	4925300			41898	11318	28931	28982	47214	47214					0.0626389314154494
LKMMGRLEL	9	Unmodified	_LKMMGRLEL_					0	0	0		ENST00000246071.7_1_20:16721543-16721627:+|nuORF	ENST00000246071.7_1_20:16721543-16721627:+|nuORF	ENST00000246071.7_1_20:16721543-16721627:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.8084106445312	2	545.809205	1089.60386	-0.93775	-0.00051183	2.7117	0.0014801	1.774	0.00096825	545.8105778063236	53.813	1.1351	53.666	53.31	54.445	-0.14723					87	31	4	0	0	0	0.18915	1	5801	5801		90.777	3.0802	1	4977300			41899	11318	28931	28982	47215	47215					0.0626389314154494
LKMMGRLEL	9	Unmodified	_LKMMGRLEL_					0	0	0		ENST00000246071.7_1_20:16721543-16721627:+|nuORF	ENST00000246071.7_1_20:16721543-16721627:+|nuORF	ENST00000246071.7_1_20:16721543-16721627:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	545.809205	1089.60386	-1.2007	-0.00065534	3.0237	0.0016504	1.8231	0.00099504	545.8107216000413	53.552	0.95615	53.648	53.336	54.292	0.095669	-0.039373	0.00035072	NaN	90.777	83	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4834000			41900	11318	28931	28982							0.0626389314154494
LKMMSTLEAD	10	Unmodified	_LKMMSTLEAD_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7380981445312	2	569.777767	1137.54098	-0.32933	-0.00018765	0.13823	7.8763E-05	-0.1911	-0.00010888	569.7772331915087	57.822	0.31652	57.589	57.424	57.74	-0.23363					12	7	2	0	0	0	0.03519	1	6324	6324		14.865	0	1	166660			41901	186	28932	28983	47216	47216					-0.022287174371513174
LKMVNNPAL	9	Unmodified	_LKMVNNPAL_					0	0	0			REV__ENSG00000074855|ENST00000159087|ANO8	REV__ENSG00000074855|ENST00000159087|ANO8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8053283691406	2	500.28642	998.558287	-0.018934	-9.4725E-06	-3.706	-0.0018541	-3.7249	-0.0018635	500.28435755338904	59.905	0.69673	59.705	59.356	60.053	-0.20016					34	18	2	0	0	0	0.024354	1	6856	6856		38.806	17.859	1	413410	+		41902	20535	28933	28984	47217	47217					0.05894990950821466
LKNAIMFGKK	10	Unmodified	_LKNAIMFGKK_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3444213867188	2	575.344269	1148.67399	0.52304	0.00030093	1.5391	0.00088551	2.0621	0.0011864	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	1.0992	1	12386	12386		32.812	6.1195	1	4068000			41903	1985	28934	28985	47218	47218					0.105595148016846
LKNARKVV	8	Unmodified	_LKNARKVV_					0	0	0		ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2	ENSG00000167207|ENST00000647318|NOD2	ENSG00000167207|ENST00000647318|NOD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2721252441406	2	464.308544	926.602535	0.5273	0.00024483	-0.46576	-0.00021626	0.061539	2.8573E-05	464.30860275905354	19.438	0.1904	19.438	19.366	19.556	0					5	3	2	0	0	0	0.027866	1	419	419		20.482	0	1	19174			41904	7659	28935	28986	47219	47219					0.13629763159326558
LKNCSPHMN	9	Unmodified	_LKNCSPHMN_					0	0	0		ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	ENSG00000001561|ENST00000321037|ENPP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2448120117188	2	522.241686	1042.46882	-0.27228	-0.0001422	-2.9417	-0.0015363	-3.214	-0.0016785	522.7425547040034	50.872	0.22969	50.723	50.528	50.758	-0.14916					9	6	2	0	0	0	0.024209	1	5325	5325		47.657	7.0847	1	120950			41905	720	28936	28987	47220	47220					-0.05071587000202271
LKNGRKISVRA	11	Unmodified	_LKNGRKISVRA_					0	0	0		ENST00000534336.1_1_11:65265625-65265937:+|nuORF	ENST00000534336.1_1_11:65265625-65265937:+|nuORF	ENST00000534336.1_1_11:65265625-65265937:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.393798828125	2	621.39367	1240.77279	0.18936	0.00011767	-1.2014	-0.00074654	-1.012	-0.00062888	621.3928046236636	103.28	0.6273	103.29	103.01	103.64	0.0054245					38	14	3	0	0	0	1.0748	1	13212	13212		18.262	0	1	753360			41906	16329	28937	28988	47221	47221					0.1620325409094221
LKNHGVSLE	9	Unmodified	_LKNHGVSLE_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.80047607421875	2	498.777274	995.539994	-0.58842	-0.00029349	2.8926	0.0014427	2.3042	0.0011493	498.7784853810952	29.171	0.7968	29.175	28.672	29.469	0.0031357					56	19	4	0	0	0	0.024374	1	1681	1681		49.442	20.292	1	920950	+		41907	22916	28938	28989	47222	47222					0.04204572300477594
LKNIGNAA	8	Unmodified	_LKNIGNAA_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.8861083984375	2	400.734877	799.455202	0.25191	0.00010095	-1.7096	-0.00068511	-1.4577	-0.00058416	400.73395611128416	54.464	0.9971	54.258	54.016	55.013	-0.20613					38	26	2	0	0	0	0.027866	1	5853	5853		42.474	18.272	1	485280	+		41908	23803	28939	28990	47223	47223					0.047452465545120504
LKNIGNAA	8	Unmodified	_LKNIGNAA_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	400.734877	799.455202	1.1566	0.00046348	-1.6547	-0.0006631	-0.49814	-0.00019962	400.7340871603892	54.555	0.51988	54.31	54.103	54.623	-0.2453	0.026153	1.261E-05	NaN	42.474	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325600	+		41909	23803	28939	28990							0.047452465545120504
LKNKRKRYRKK	11	Unmodified	_LKNKRKRYRKK_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.79266357421875	3	506.666954	1516.97903	-1.2028	-0.00060939	2.2179	0.0011238	1.0152	0.00051436	507.0032544311728	44.226	0.10489	44.081	43.994	44.099	-0.14471					4	2	2	0	0	0	0.024888	1	4183	4183		9.6461	2.9865	1	38825	+		41910	36458	28940	28991	47224	47224					0.2412224699003218
LKNLDLWC	8	Unmodified	_LKNLDLWC_					0	0	0		nc|ENSG00000123360|Q01064-2|PDE1B;ENSG00000123360|ENST00000243052|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.27008056640625	2	502.76532	1003.51609	-0.28545	-0.00014351	-2.2591	-0.0011358	-2.5445	-0.0012793	502.76409365278977	39.989	0.41813	39.764	39.696	40.114	-0.225					16	10	2	0	0	0	0.027866	1	3408	3408		40.573	24.099	1	377230			41911	3973	28941	28992	47225	47225					0.014470155424419318
LKNLELLHKM	10	Unmodified	_LKNLELLHKM_					0	0	0			REV__ENSG00000153044|ENST00000283006|CENPH	REV__ENSG00000153044|ENST00000283006|CENPH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8699340820312	2	619.868108	1237.72166	-1.0156	-0.00062956	3.1308	0.0019407	2.1152	0.0013111	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.118	1	12042	12042		30.318	4.2543	1	4459000	+		41912	24879	28942	28993	47226	47226					0.11231169001848684
LKNLPFYDVL	10	Unmodified	_LKNLPFYDVL_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.53546142578125	3	407.90078	1220.68051	0.14961	6.1026E-05	4.167	0.0016997	4.3166	0.0017607	407.90264371159805	22.025	0.42879	21.834	21.613	22.042	-0.19072					19	8	3	0	0	0	0.03519	1	709	709		16.007	0	1	38316			41913	1624	28943	28994	47227	47227					0.07899731234033425
LKNLRKTRTL	10	Unmodified	_LKNLRKTRTL_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3;ENST00000539112.5_1_15:102194787-102197157:-|nuORF	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.9013061523438	2	621.903871	1241.79319	-1.8282	-0.001137	-2.9575	-0.0018393	-4.7857	-0.0029763	621.901779649968	105.46	0.42779	105.33	105.07	105.5	-0.13099					28	11	3	0	0	0	1.1131	1	13120	13120		17.468	0	1	1094000			41914	9435	28944	28995	47228	47228					0.18196424750726692
LKNLTRLN	8	Unmodified	_LKNLTRLN_					0	0	0		TLR8|p.D645N|1|0.57|ENSG00000101916|chrX:12920973-12920973|G/A|missense_variant	TLR8|p.D645N|1|0.57|ENSG00000101916|chrX:12920973-12920973|G/A|missense_variant	TLR8|p.D645N|1|0.57|ENSG00000101916|chrX:12920973-12920973|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.83642578125	2	486.303458	970.592364	-0.34801	-0.00016924	-1.5331	-0.00074558	-1.8812	-0.00091481	486.3028528170491	33.678	0.38873	33.478	33.286	33.675	-0.20019					14	9	2	0	0	0	0.027866	1	2442	2442		63.306	0	1	77404			41915	38077	28945	28996	47229	47229					0.10589155434070108
LKNLYDLY	8	Unmodified	_LKNLYDLY_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2498168945312	2	521.2844	1040.55425	-0.20999	-0.00010947	-0.74025	-0.00038588	-0.95025	-0.00049535	521.2843379838476	72.325	1.0517	72.048	71.705	72.756	-0.2769					31	24	2	0	0	0	0.027866	1	8421	8421		55.504	9.5523	1	221800			41916	1423	28946	28997	47230	47230					0.035592247287468126
LKNLYLAQN	9	Unmodified	_LKNLYLAQN_					0	0	0		nc|ENSG00000010626|Q53EV4-2|LRRC23;ENSG00000010626|ENST00000443597|LRRC23	nc|ENSG00000010626|Q53EV4-2|LRRC23	nc|ENSG00000010626|Q53EV4-2|LRRC23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3253784179688	2	538.808574	1075.60259	-0.089716	-4.834E-05	-3.9661	-0.002137	-4.0558	-0.0021853	539.3076724311233	101.8	0.44235	101.68	101.41	101.86	-0.12666					20	10	3	0	0	0	0.024523	1	12620	12620		21.96	0	1	100260			41917	879	28947	28998	47231	47231					0.06781718368642942
LKNMCDMLA	9	Unmodified	_LKNMCDMLA_					0	0	0			REV__ENSG00000184117|ENST00000216121|NIPSNAP1	REV__ENSG00000184117|ENST00000216121|NIPSNAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.76953125	2	519.742673	1037.47079	-0.47635	-0.00024758	0.72796	0.00037835	0.25161	0.00013077	519.7428799894853	22.322	0.37671	22.246	21.987	22.363	-0.075296					9	7	2	0	0	0	0.024523	1	761	761		21.96	7.095	1	40407	+		41918	27637	28948	28999	47232	47232					-0.04644294306604024
LKNMLSQV	8	Unmodified	_LKNMLSQV_					0	0	0		ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.76361083984375	2	466.76532	931.516088	0.41126	0.00019196	-3.8545	-0.0017992	-3.4433	-0.0016072	466.7634096958611	69.758	0.6471	69.771	69.424	70.071	0.012421					45	15	4	0	0	0	0.44952	1	8319	8319		90.37	16.115	1	3795700			41919	4018	28949	29000	47233	47233					0.04759015542435918
LKNNQGSA	8	Unmodified	_LKNNQGSA_					0	0	0			REV__RASGRF1|p.N914Tfs*15|1|0.14|ENSG00000058335|chr15:78999798-78999798|G/-|frameshift_variant	REV__RASGRF1|p.N914Tfs*15|1|0.14|ENSG00000058335|chr15:78999798-78999798|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.23492431640625	2	416.219591	830.42463	-0.38896	-0.00016189	1.6335	0.00067989	1.2445	0.000518	416.220224345296	23.639	0.63547	23.578	23.308	23.943	-0.060862					24	14	2	0	0	0	0.027866	1	944	944		31.955	7.7521	1	487830	+		41920	20231	28950	29001	47234	47234					0.002634681694758001
LKNQRAKL	8	Unmodified	_LKNQRAKL_					0	0	0		CON__Q9DCV7	CON__Q9DCV7	CON__Q9DCV7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7886962890625	2	485.811451	969.608348	-0.10762	-5.2285E-05	-1.2527	-0.00060857	-1.3603	-0.00066085	485.8105435396619	46.859	0.33887	46.859	46.772	47.111	0					14	8	2	0	0	0	0.027866	1	4682	4682		76.847	0	1	486640		+	41921	571	28951	29002	47235	47235					0.12232861670975126
LKNQRAKL	8	Unmodified	_LKNQRAKL_					0	0	0		CON__Q9DCV7	CON__Q9DCV7	CON__Q9DCV7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7886962890625	2	485.811451	969.608348	-0.76178	-0.00037008	-0.63108	-0.00030658	-1.3929	-0.00067666	485.81100035219583	46.817	0.44791	46.869	46.758	47.206	0.051395					20	11	3	0	0	0	0.027866	1	4619	4619		76.847	0	1	484730		+	41922	571	28951	29002	47236	47236					0.12232861670975126
LKNQTLKKKL	10	Unmodified	_LKNQTLKKKL_					0	0	0			REV__ENSG00000049883|ENST00000380639|PTCD2	REV__ENSG00000049883|ENST00000380639|PTCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	405.271207	1212.79179	0.85438	0.00034626	0.91627	0.00037134	1.7707	0.0007176	405.271415515116	26.965	0.14094	27.046	26.923	27.064	0.081293					6	3	2	0	0	0	0.03519	1	1364	1364		42.864	18.345	1	35271	+		41923	20152	28952	29003	47237	47237					0.19390790661964274
LKNRLKPGF	9	Unmodified	_LKNRLKPGF_					0	0	0		ENST00000341119.9_1_7:87488049-87505510:-|nuORF	ENST00000341119.9_1_7:87488049-87505510:-|nuORF	ENST00000341119.9_1_7:87488049-87505510:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.294677734375	2	536.834926	1071.6553	-0.11702	-6.2818E-05	3.1697	0.0017016	3.0527	0.0016388	536.8365971939769	56.523	0.50546	56.312	56.043	56.548	-0.21115					22	12	2	0	0	0	0.024541	1	6124	6124		17.365	5.1581	1	437500			41924	12485	28953	29004	47238	47238					0.12233721222105487
LKNRNGIF	8	Unmodified	_LKNRNGIF_					0	0	0			REV__ENSG00000188001|ENST00000345063|TPRG1	REV__ENSG00000188001|ENST00000345063|TPRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2648010253906	2	481.282526	960.550499	-0.55636	-0.00026776	1.8902	0.00090973	1.3339	0.00064197	481.2839263844471	37.54	0.35009	37.476	37.305	37.655	-0.063389					18	9	3	0	0	0	0.027866	1	3068	3068		42.474	0	1	127860	+		41925	28000	28954	29005	47239	47239					0.06864599745551914
LKNRWVCIW	9	Unmodified	_LKNRWVCIW_					0	0	0			REV__chr16:57897543-57897796|437|35.54|0.93|5.26|-|0|CNGB1,CNGB1|1	REV__chr16:57897543-57897796|437|35.54|0.93|5.26|-|0|CNGB1,CNGB1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2032775878906	3	406.558583	1216.65392	1.0691	0.00043464	-2.5468	-0.0010354	-1.4777	-0.00060077	406.5576793661962	22.972	0.41571	22.781	22.664	23.079	-0.19117					12	8	2	0	0	0	0.024511	1	823	823		19.104	0	1	228050	+		41926	19382	28955	29006	47240	47240					0.05425763861694577
LKNSKPDGVA	10	Unmodified	_LKNSKPDGVA_					0	0	0		ENST00000430454.5_1_7:18535437-18542232:+|nuORF	ENST00000430454.5_1_7:18535437-18542232:+|nuORF	ENST00000430454.5_1_7:18535437-18542232:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.33447265625	2	514.790381	1027.56621	-0.037821	-1.947E-05	0.59473	0.00030616	0.55691	0.00028669	514.7899715730285	50.142	0.62041	49.991	49.634	50.254	-0.1512					30	17	2	0	0	0	0.03519	1	5151	5151		21.96	0	1	236840			41927	14172	28956	29007	47241	47241					0.05352841471949432
LKNSKYQL	8	Unmodified	_LKNSKYQL_					0	0	0		ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2740478515625	2	497.290017	992.565481	-0.23999	-0.00011935	-1.352	-0.00067235	-1.592	-0.00079169	497.2891211560637	40.147	0.55509	40.035	39.792	40.347	-0.11223					34	14	3	0	0	0	0.027866	1	3490	3490		99.375	19.924	1	641120			41928	3006	28957	29008	47242	47242					0.06890046822900331
LKNSSLSSI	9	Unmodified	_LKNSSLSSI_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.77166748046875	2	474.771657	947.528761	-0.47587	-0.00022593	0.14737	6.9965E-05	-0.32851	-0.00015597	474.77166322133087	29.294	1.0218	29.122	28.85	29.872	-0.17258					47	23	3	0	0	0	0.11092	1	1785	1785		108.09	1.4044	1	3761600	+		41929	26520	28958	29009	47243	47243					0.05289750206338795
LKNSSRIY	8	Unmodified	_LKNSSRIY_					0	0	0		nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7923583984375	2	490.779816	979.545079	-0.78417	-0.00038485	1.1156	0.00054752	0.33145	0.00016267	490.78003177423795	37.26	0.89936	37.041	36.607	37.506	-0.2195					52	22	4	0	0	0	0.027866	1	3043	3043		24.203	15.971	1	1580900			41930	1646	28959	29010	47244	47244					0.05448876163075056
LKNSSRIY	8	Unmodified	_LKNSSRIY_					0	0	0		nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.779816	979.545079	0.29622	0.00014538	-0.2706	-0.00013281	0.025615	1.2572E-05	490.77948393637826	37.189	0.5886	36.98	36.765	37.354	-0.2092	-0.033061	-0.00056947	NaN	17.365	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1474100			41931	1646	28959	29010							0.05448876163075056
LKNVFFIL	8	Unmodified	_LKNVFFIL_					0	0	0		nc|ENSG00000134042|Q9BYG7-6|MRO;nc|ENSG00000134042|Q9BYG7-2|MRO;ENSG00000134042|ENST00000398439|MRO;nc|ENSG00000134042|Q9BYG7-5|MRO	nc|ENSG00000134042|Q9BYG7-6|MRO	nc|ENSG00000134042|Q9BYG7-6|MRO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2623596191406	2	497.310221	992.605889	-0.97391	-0.00048433	-3.765	-0.0018724	-4.7389	-0.0023567	497.30824384621025	48.858	0.74584	48.757	48.323	49.068	-0.1008					34	19	2	0	0	0	0.027866	1	4840	4840		52.299	0	1	218890			41932	4745	28960	29011	47245	47245					0.1092901321331965
LKPAHPKLMA	10	Unmodified	_LKPAHPKLMA_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.3318481445312	2	553.331162	1104.64777	-0.4027	-0.00022283	2.6291	0.0014548	2.2264	0.001232	553.332456575769	95.559	1.4151	95.408	95.012	96.427	-0.15186					99	32	5	0	0	0	1.1329	1	11811	11811		27.882	2.3082	1	3966700	+		41933	23683	28961	29012	47246	47246					0.09963245630206075
LKPANVFL	8	Unmodified	_LKPANVFL_					0	0	0		nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2;nc|ENSG00000117650|P51955-3|NEK2	nc|ENSG00000117650|P51955-2|NEK2	nc|ENSG00000117650|P51955-2|NEK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.27801513671875	2	451.278921	900.543289	-0.093133	-4.2029E-05	0.11578	5.225E-05	0.022649	1.0221E-05	451.2788316672266	67.26	0.88708	66.971	66.665	67.552	-0.28834					61	21	4	0	0	0	0.61897	1	7983	7983		74.517	0	1	2559700			41934	3651	28962	29013	47247	47247					0.08903867145136246
LKPANVFL	8	Unmodified	_LKPANVFL_					0	0	0		nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2;nc|ENSG00000117650|P51955-3|NEK2	nc|ENSG00000117650|P51955-2|NEK2	nc|ENSG00000117650|P51955-2|NEK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2774658203125	2	451.278921	900.543289	-0.0023362	-1.0543E-06	0.099704	4.4994E-05	0.097368	4.394E-05	451.27880365922806	66.999	0.90451	67.022	66.769	67.674	0.023903					47	21	3	0	0	0	0.61897	1	7897	7897		74.517	0	1	2201700			41935	3651	28962	29013	47248	47248					0.08903867145136246
LKPANVFLDG	10	Unmodified	_LKPANVFLDG_					0	0	0		nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2;nc|ENSG00000117650|P51955-3|NEK2	nc|ENSG00000117650|P51955-2|NEK2	nc|ENSG00000117650|P51955-2|NEK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.75537109375	2	537.303124	1072.5917	-1.4333	-0.00077012	-1.8733	-0.0010065	-3.3066	-0.0017766	537.3019477081078	38.105	0.5364	37.887	37.681	38.218	-0.21848					29	15	3	0	0	0	0.03519	1	3159	3159		19.997	0	1	589940			41936	3651	28963	29014	47249	47249					0.058303159943761784
LKPDVRLSR	9	Unmodified	_LKPDVRLSR_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-6|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7593994140625	2	542.33529	1082.65603	-0.58672	-0.0003182	0.21902	0.00011878	-0.3677	-0.00019942	542.3352619225913	41.293	0.57449	41.157	40.869	41.443	-0.13553					34	14	3	0	0	0	0.024541	1	3604	3604		16.473	0.83134	1	810990			41937	7936	28964	29015	47250	47250					0.1180051587118669
LKPENVKV	8	Unmodified	_LKPENVKV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7872009277344	2	463.78711	925.559667	0.69134	0.00032063	-0.63638	-0.00029515	0.054954	2.5487E-05	463.7866923026978	70.808	1.1213	70.808	70.483	71.604	0					65	27	4	0	0	0	0.44658	1	8566	8566		90.777	5.4172	1	6074700			41938	8851	28965	29016	47251	47251					0.0939094831123839
LKPENVKV	8	Unmodified	_LKPENVKV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.78729248046875	2	463.78711	925.559667	0.97648	0.00045288	-0.9771	-0.00045317	-0.00061882	-2.87E-07	463.7865642315273	71.188	1.3287	70.899	70.546	71.875	-0.28857					72	33	4	0	0	0	0.35998	2	8569	8569;8581		102.77	17.414	1	6749200			41939	8851	28965	29016	47252;47253	47252					0.0939094831123839
LKPENVKV	8	Unmodified	_LKPENVKV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.787109375	2	463.78711	925.559667	0.61242	0.00028403	-0.63001	-0.00029219	-0.01759	-8.1582E-06	463.786713180117	70.89	1.3658	70.901	70.55	71.916	0.010735					73	34	4	0	0	0	0.44658	1	8507	8507		90.777	5.4172	1	5401900			41940	8851	28965	29016	47254	47254					0.0939094831123839
LKPFILQDLI	10	Unmodified	_LKPFILQDLI_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.5843505859375	3	400.584792	1198.73255	0.99202	0.00039739	-2.5706	-0.0010298	-1.5786	-0.00063236	400.58371914235164	25.217	1.0128	25.046	24.647	25.659	-0.17078					73	23	4	0	0	0	0.83673	1	1164	1164		58.23	6.7022	1	1369400	+		41941	21051	28966	29017	47255	47255					0.14112894647814755
LKPIPFRL	8	Unmodified	_LKPIPFRL_					0	0	0			REV__nc|ENSG00000167528|Q96N77-2|ZNF641	REV__nc|ENSG00000167528|Q96N77-2|ZNF641	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.30340576171875	2	492.323663	982.632772	-0.46208	-0.00022749	1.1394	0.00056096	0.67734	0.00033347	492.324921542523	31.637	0.19903	31.706	31.606	31.805	0.068962					5	4	2	0	0	0	0.027866	1	2080	2080		52.299	7.7681	1	25479	+		41942	26150	28967	29018	47256	47256					0.14076121824507482
LKPKERAR	8	Unmodified	_LKPKERAR_					0	0	0		ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7674255371094	2	499.3169	996.619247	0.31461	0.00015709	-0.57827	-0.00028874	-0.26365	-0.00013165	499.31649053810065	40.721	0.91261	40.721	40.448	41.36	0					59	25	4	0	0	0	0.027866	1	3583	3583		26.796	1.3459	1	2658000			41943	17151	28968	29019	47257	47257					0.12080264045266631
LKPKLGRA	8	Unmodified	_LKPKLGRA_					0	0	0			REV__ENST00000360403.6_1_1:45316663-45323405:-|nuORF	REV__ENST00000360403.6_1_1:45316663-45323405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7879943847656	2	441.797812	881.581071	0.26868	0.0001187	2.4095	0.0010645	2.6782	0.0011832	441.79838998681225	40.753	0.42787	40.753	40.623	41.051	0					18	11	2	0	0	0	0.027866	1	3613	3613		17.365	10.172	1	173630	+		41944	30907	28969	29020	47258	47258					0.13554378130606892
LKPKLGRA	8	Unmodified	_LKPKLGRA_					0	0	0			REV__ENST00000360403.6_1_1:45316663-45323405:-|nuORF	REV__ENST00000360403.6_1_1:45316663-45323405:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	441.797812	881.581071	-0.71787	-0.00031715	6.3026	0.0027845	5.5848	0.0024673	441.8008976594655	41.059	0.63431	40.829	40.485	41.119	-0.23029	0.037991	0.0014559	NaN	17.365	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178030	+		41945	30907	28969	29020							0.13554378130606892
LKPKNARA	8	Unmodified	_LKPKNARA_					0	0	0			REV__ENST00000553932.5_1_14:39306894-39307230:-|nuORF	REV__ENST00000553932.5_1_14:39306894-39307230:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.7637023925781	2	449.285069	896.555585	-0.13566	-6.0948E-05	2.4131	0.0010842	2.2774	0.0010232	449.28462725802655	30.499	0.45728	30.35	30.056	30.513	-0.14952					13	10	2	0	0	0	0.027866	1	1942	1942		12.959	0.75233	1	46645	+		41946	34976	28970	29021	47259	47259					0.10316903608168104
LKPLEYGSV	9	Unmodified	_LKPLEYGSV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2715759277344	2	503.2844	1004.55425	0.13884	6.9874E-05	3.1645	0.0015927	3.3034	0.0016625	503.7855795600133	57.25	0.33702	57.086	56.941	57.278	-0.16432					12	8	3	0	0	0	0.024405	1	6422	6422		27.882	4.3595	1	145440			41947	4929	28971	29022	47260	47260					0.05215224728760859
LKPLEYGSV	9	Unmodified	_LKPLEYGSV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2715759277344	2	503.2844	1004.55425	0.31944	0.00016077	-1.6561	-0.00083351	-1.3367	-0.00067274	503.28383148622805	57.605	0.38151	57.43	57.19	57.571	-0.1749					25	9	3	0	0	0	0.024405	1	6422	6422		27.882	4.3595	1	214260			41948	4929	28971	29022	47261	47261					0.05215224728760859
LKPLLLEIL	9	Unmodified	_LKPLLLEIL_					0	0	0			REV__nc|ENSG00000170581|P52630-4|STAT2	REV__nc|ENSG00000170581|P52630-4|STAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2985229492188	2	526.359911	1050.70527	-1.0572	-0.00055647	3.0712	0.0016166	2.014	0.0010601	526.3613273316158	38.247	0.90452	38.165	37.777	38.682	-0.082516					53	24	3	0	0	0	0.024541	1	3227	3227		21.96	0	1	414250	+		41949	26486	28972	29023	47262	47262					0.1819441110740172
LKPLRRRKPQR	11	Unmodified	_LKPLRRRKPQR_					0	0	0			REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF	REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.23736572265625	3	483.319666	1446.93717	-0.37379	-0.00018066	-3.1309	-0.0015132	-3.5047	-0.0016939	483.3167371281626	40.425	0.43409	40.275	40.04	40.474	-0.1497					17	11	2	0	0	0	0.024899	1	3532	3532		5.4129	2.5611	1	470500	+		41950	29925	28973	29024	47263	47263					0.2315769130152603
LKPLSLPSL	9	Unmodified	_LKPLSLPSL_					0	0	0			REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.3127746582031	2	484.312961	966.611368	0.32462	0.00015722	-0.57586	-0.0002789	-0.25124	-0.00012168	484.31246372669887	99.613	0.77578	99.613	99.135	99.91	0					44	17	3	0	0	0	0.10174	2	12742	12718;12742		110.12	2.0324	1	1008200	+		41951	37420	28974	29025	47264;47265	47265					0.12672692005139652
LKPNKLKKP	9	Unmodified	_LKPNKLKKP_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7980346679688	2	533.360776	1064.707	-1.0673	-0.00056927	-0.45195	-0.00024105	-1.5193	-0.00081033	533.3607129276851	55.035	0.30878	55.133	54.949	55.257	0.098015					11	8	2	0	0	0	0.024477	1	5976	5976		27.882	5.9224	1	188860	+		41952	26054	28975	29026	47266	47266					0.17723464916025478
LKPPGPLVPP	10	Unmodified	_LKPPGPLVPP_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7878723144531	2	507.820953	1013.62735	-0.1002	-5.0882E-05	2.0954	0.0010641	1.9953	0.0010132	507.8223145752519	19.728	0.2799	19.728	19.6	19.88	0					7	5	2	0	0	0	0.03519	1	447	447		11.511	0	1	9690.9			41953	1939	28976	29027	47267	47267					0.1210839824203731
LKPPLVPPV	9	Unmodified	_LKPPLVPPV_					0	0	0			REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	REV__ENST00000474942.5_1_20:44403069-44408499:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29229736328125	2	480.318046	958.621539	0.62006	0.00029783	-0.013417	-6.4446E-06	0.60664	0.00029138	480.3175894950963	55.922	0.24902	55.922	55.786	56.035	0					8	6	2	0	0	0	0.024517	1	6184	6184		19.36	12.167	1	76257	+		41954	22731	28977	29028	47268	47268					0.14057299730370687
LKPPPICRP	9	Unmodified	_LKPPPICRP_					0	0	0			REV__ENST00000471934.1_1_1:44435799-44436661:+|nuORF	REV__ENST00000471934.1_1_1:44435799-44436661:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.84423828125	2	510.80478	1019.59501	-0.66709	-0.00034075	-0.0069539	-3.5521E-06	-0.67404	-0.0003443	511.3064831466217	76.111	0.50942	76.111	75.881	76.391	0					25	12	4	0	0	0	0.024457	1	9394	9394		37.159	3.6435	1	282440	+		41955	33189	28978	29029	47269	47269					0.08599287567392366
LKPPSNVVSPL	11	Unmodified	_LKPPSNVVSPL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8427124023438	2	575.845156	1149.67576	-1.2575	-0.00072414	-2.5466	-0.0014665	-3.8042	-0.0021906	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.013	1	11180	11180		33.922	3.418	1	6251500			41956	2021	28979	29030	47270	47270					0.10690847091291289
LKPPSNVVSPL	11	Unmodified	_LKPPSNVVSPL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8433837890625	2	575.845156	1149.67576	-0.51071	-0.00029409	-3.3307	-0.0019179	-3.8414	-0.002212	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.97926	1	10908	10908		41.427	0.64845	1	2085600			41957	2021	28979	29030	47271	47271					0.10690847091291289
LKPRKAPA	8	Unmodified	_LKPRKAPA_					0	0	0		nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3	nc|ENSG00000214021|Q9Y4R7|TTLL3	nc|ENSG00000214021|Q9Y4R7|TTLL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.7663879394531	2	440.789987	879.565421	0.40602	0.00017897	-2.3289	-0.0010266	-1.9229	-0.00084759	440.7889848468762	37.266	0.23018	37.056	36.923	37.153	-0.2092					7	5	2	0	0	0	0.027866	1	2973	2973		20.482	0	1	121950			41958	10536	28980	29031	47272	47272					0.12082091613547163
LKPRQSIGPG	10	Unmodified	_LKPRQSIGPG_					0	0	0			REV__ENST00000305623.12_1_10:5319231-5325679:-|nuORF	REV__ENST00000305623.12_1_10:5319231-5325679:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2950439453125	2	526.81419	1051.61383	-0.2165	-0.00011406	1.4767	0.00077794	1.2602	0.00066388	526.814960081387	54.16	0.75639	54.012	53.821	54.577	-0.14723					35	21	2	0	0	0	0.03519	1	5866	5866		34.173	7.4796	1	441890	+		41959	30114	28981	29032	47273	47273					0.09008540462809833
LKPSLQIAD	9	Unmodified	_LKPSLQIAD_					0	0	0			REV__ENSG00000130762|ENST00000378378|ARHGEF16	REV__ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.26971435546875	2	492.78985	983.565146	0.72698	0.00035825	-0.58423	-0.0002879	0.14275	7.0345E-05	492.78942491348386	35.953	0.63685	35.755	35.575	36.212	-0.19829					35	17	3	0	0	0	0.02435	1	2773	2773		26.693	0	1	703490	+		41960	23151	28982	29033	47274	47274					0.07270627103036986
LKPSLQIAD	9	Unmodified	_LKPSLQIAD_					0	0	0			REV__ENSG00000130762|ENST00000378378|ARHGEF16	REV__ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.78985	983.565146	-1.057	-0.00052089	1.1926	0.00058771	0.13559	6.6816E-05	492.79032759741466	35.987	0.73607	35.782	35.506	36.242	-0.20518	-0.010138	0.00085955	NaN	26.693	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489150	+		41961	23151	28982	29033							0.07270627103036986
LKPSLQIAD	9	Unmodified	_LKPSLQIAD_					0	0	0			REV__ENSG00000130762|ENST00000378378|ARHGEF16	REV__ENSG00000130762|ENST00000378378|ARHGEF16	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.78985	983.565146	0.11691	5.7611E-05	0.074135	3.6533E-05	0.19104	9.4144E-05	492.7897107304168	36.056	0.78223	35.84	35.544	36.326	-0.21661	0.047496	-0.00024281	NaN	26.693	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761940	+		41962	23151	28982	29033							0.07270627103036986
LKPTRELH	8	Unmodified	_LKPTRELH_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.29736328125	2	497.295633	992.576714	0.5982	0.00029748	3.2278	0.0016051	3.826	0.0019026	497.29713382221155	69.867	2.3595	69.574	68.634	70.993	-0.29291					150	63	4	0	0	0	0.845	1	8402	8402		55.504	0	1	3690300	+		41963	20777	28983	29034	47275	47275					0.0801286891704649
LKPTRTKT	8	Unmodified	_LKPTRTKT_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|29|1|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|136|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|29|1|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|29|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.764404296875	2	472.798009	943.581465	-0.6007	-0.00028401	0.88657	0.00041917	0.28588	0.00013516	472.79821948803885	28.258	0.4367	28.106	27.885	28.321	-0.15195					24	10	4	0	0	0	0.027866	1	1632	1632		18.324	6.1176	1	295510			41964	17840	28984	29035	47276	47276					0.10741753059812709
LKPVEVVK	8	Unmodified	_LKPVEVVK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2824401855469	2	456.299853	910.585153	-0.3832	-0.00017485	3.162	0.0014428	2.7788	0.001268	456.30120203460604	34.54	1.1454	34.536	34.298	35.443	-0.0045624					83	29	3	0	0	0	0.027866	1	2565	2565		20.947	3.582	1	896490			41965	6479	28985	29036	47277	47277					0.1262842283365444
LKPYRPPA	8	Unmodified	_LKPYRPPA_					0	0	0			REV__nc|ENSG00000159212|Q96NY7|CLIC6	REV__nc|ENSG00000159212|Q96NY7|CLIC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.748291015625	2	471.281995	940.549437	0.092148	4.3428E-05	0.043406	2.0456E-05	0.13555	6.3884E-05	471.28179603512643	50.292	0.88973	50.111	49.644	50.534	-0.18071					49	23	3	0	0	0	0.027866	1	5029	5029		26.796	0	1	1118800	+		41966	36823	28986	29037	47278	47278					0.07678385376652841
LKQAFLPPN	9	Unmodified	_LKQAFLPPN_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.2991333007812	2	514.300384	1026.58622	-0.2643	-0.00013593	-3.7987	-0.0019537	-4.063	-0.0020896	514.2983788996071	95.184	0.77753	95.188	94.791	95.569	0.0041199					50	17	4	0	0	0	0.96322	1	12020	12020		27.882	1.1893	1	1155800	+		41967	23829	28987	29038	47279	47279					0.07398637202550162
LKQAIGPK	8	Unmodified	_LKQAIGPK_					0	0	0			REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF	REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2569580078125	2	427.776545	853.538538	0.21696	9.2809E-05	0.47757	0.00020429	0.69452	0.0002971	427.7763527760949	38.694	0.62849	38.468	38.143	38.771	-0.2257					26	16	2	0	0	0	0.027866	1	3235	3235		18.324	0	1	259190	+		41968	35765	28988	29039	47280	47280					0.10590983002373378
LKQAIGPK	8	Unmodified	_LKQAIGPK_					0	0	0			REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF	REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	427.776545	853.538538	-0.8563	-0.00036631	1.4497	0.00062014	0.59338	0.00025383	427.7769718376428	38.709	0.64473	38.545	38.083	38.727	-0.16459	0.038469	0.00037374	NaN	18.324	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182550	+		41969	35765	28988	29039							0.10590983002373378
LKQEQKKWC	9	Unmodified	_LKQEQKKWC_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.25048828125	2	595.821158	1189.62776	-0.7561	-0.0004505	4.361	0.0025984	3.6049	0.0021479	595.8237812876326	49.338	0.60306	49.058	48.756	49.359	-0.27977					53	15	5	0	0	0	0.024541	1	4891	4891		14.865	0	1	933750	+		41970	29168;36188	28989	29040	47281	47281					0.040534498995839385
LKQETPAVLE	10	Unmodified	_LKQETPAVLE_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant;nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.3025512695312	2	564.318971	1126.62339	0.041588	2.3469E-05	-2.3645	-0.0013343	-2.3229	-0.0013109	564.3170692261473	86.625	0.17452	86.488	86.356	86.53	-0.13734					7	3	3	0	0	0	0.03519	1	10496	10496		31.53	8.0071	1	36384			41971	4722	28990	29041	47282	47282					0.0651426395766066
LKQGKTLAFT	10	Unmodified	_LKQGKTLAFT_					0	0	0		nc|ENSG00000112304|Q9NPJ3-2|ACOT13;ENSG00000112304|ENST00000230048|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8309936523438	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.1286	1	10763	10763		25.574	1.3713	1	6583300			41972	3198	28991	29042	47283	47283					0.10094577919790026
LKQGRLVK	8	Unmodified	_LKQGRLVK_					0	0	0			REV__ENST00000381431.9_1_4:52886931-52887045:-|nuORF	REV__ENST00000381431.9_1_4:52886931-52887045:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3289489746094	2	471.316369	940.618185	-0.41032	-0.00019339	-1.8473	-0.00087065	-2.2576	-0.001064	471.3149707306019	22.623	0.22877	22.437	22.325	22.554	-0.18539					8	4	2	0	0	0	0.027866	1	826	826		25.45	0	1	18990	+		41973	31518	28992	29043	47284	47284					0.14550049676358867
LKQGSRIVEVQ	11	Unmodified	_LKQGSRIVEVQ_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24053955078125	3	419.582221	1255.72483	2.082	0.00087358	-1.738	-0.00072921	0.34406	0.00014436	419.58264690686184	23.632	0.37617	23.441	23.284	23.66	-0.19117					12	8	2	0	0	0	0.024809	1	940	940		8.4073	5.1959	1	44825	+		41974	23025	28993	29044	47285	47285					0.10720135380211104
LKQIAYID	8	Unmodified	_LKQIAYID_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.7691955566406	2	482.279118	962.543683	-0.55497	-0.00026765	-1.2548	-0.00060518	-1.8098	-0.00087283	482.2781766170003	44.599	0.24015	44.495	44.35	44.59	-0.10377					11	5	3	0	0	0	0.027866	1	4153	4153		38.806	13.356	1	154700	+		41975	20457	28994	29045	47286	47286					0.060912420743079565
LKQIKPISI	9	Unmodified	_LKQIKPISI_					0	0	0			REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.78564453125	2	520.347335	1038.68012	-0.64588	-0.00033608	0.63676	0.00033134	-0.0091165	-4.7437E-06	520.3474703135173	78.307	1.2009	78.307	78.042	79.243	0					44	28	3	0	0	0	0.024405	1	9669	9669		27.882	0	1	391900	+		41976	32150	28995	29046	47287	47287					0.16232356304840323
LKQKIERV	8	Unmodified	_LKQKIERV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.30810546875	2	507.326934	1012.63931	-1.0344	-0.0005248	-2.7246	-0.0013822	-3.759	-0.001907	507.32522205064186	43.617	0.56638	43.398	43.068	43.634	-0.21939					33	15	3	0	0	0	0.027866	1	3975	3975		53.351	5.4358	1	906910			41977	6479	28996	29047	47288	47288					0.13350014985235248
LKQLDKLY	8	Unmodified	_LKQLDKLY_					0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.75335693359375	2	510.808042	1019.60153	-0.39565	-0.0002021	3.0893	0.001578	2.6936	0.0013759	510.8094665224701	45.256	1.1929	45.003	44.67	45.863	-0.25252					58	32	3	0	0	0	0.027866	1	4389	4389		63.306	5.495	1	2302400	+		41978	21711	28997	29048	47289	47289					0.09251503999757915
LKQLDNLKV	9	Unmodified	_LKQLDNLKV_					0	0	0		ENST00000433284.1_1_22:49609931-49610129:-|nuORF	ENST00000433284.1_1_22:49609931-49610129:-|nuORF	ENST00000433284.1_1_22:49609931-49610129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3065185546875	2	535.832049	1069.64954	-0.64185	-0.00034392	1.1837	0.00063425	0.54182	0.00029033	535.8324611613363	78.456	1.1172	78.456	77.918	79.035	0					58	26	4	0	0	0	0.024511	1	9678	9678		19.104	0	1	890750			41979	14221	28998	29049	47290	47290					0.11750577919792704
LKQLGTLYRN	10	Unmodified	_LKQLGTLYRN_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.5706787109375	3	402.571545	1204.69281	0.5349	0.00021534	-2.4806	-0.00099861	-1.9457	-0.00078328	402.57051897965744	19.969	1.3279	19.746	19.037	20.365	-0.22344					37	26	3	0	0	0	1.0909	1	461	461		33.922	1.1711	1	218460	+		41980	36819	28999	29050	47291	47291					0.09864767697104071
LKQLIDGIH	9	Unmodified	_LKQLIDGIH_					0	0	0			REV__FGD1|p.R452H|1|0.2|ENSG00000102302|chrX:54465838-54465838|C/T|missense_variant	REV__FGD1|p.R452H|1|0.2|ENSG00000102302|chrX:54465838-54465838|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.81005859375	2	518.811116	1035.60768	-0.14392	-7.4668E-05	-1.3142	-0.00068184	-1.4582	-0.00075651	518.8102552827737	95.189	1.2171	95.037	94.71	95.927	-0.15186					63	27	3	0	0	0	0.70186	1	11721	11721		45.952	5.1738	1	1305800	+		41981	36037	29000	29051	47292	47292					0.09130022231261137
LKQLIDGIH	9	Unmodified	_LKQLIDGIH_					0	0	0			REV__FGD1|p.R452H|1|0.2|ENSG00000102302|chrX:54465838-54465838|C/T|missense_variant	REV__FGD1|p.R452H|1|0.2|ENSG00000102302|chrX:54465838-54465838|C/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	518.811116	1035.60768	-0.39184	-0.00020329	-1.0878	-0.00056434	-1.4796	-0.00076763	518.8104013285716	95.186	1.339	95.049	94.68	96.019	-0.13689	0.014261	0.00049277	NaN	45.952	62	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1542000	+		41982	36037	29000	29051							0.09130022231261137
LKQLNRMHG	9	Unmodified	_LKQLNRMHG_					0	0	0			REV__ENSG00000270601|ENST00000622421|PRAMEF5	REV__ENSG00000270601|ENST00000622421|PRAMEF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8633422851562	2	548.805842	1095.59713	-0.33881	-0.00018594	-4.4004	-0.002415	-4.7392	-0.0026009	548.8032708660608	36.555	0.42811	36.35	36.056	36.484	-0.20518					18	10	3	0	0	0	0.024487	1	2880	2880		31.955	16.313	1	155390	+		41983	28609	29001	29052	47293	47293					0.05315716305199203
LKQMQEFFGL	10	Unmodified	_LKQMQEFFGL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1;ENST00000315274.6_1_11:102668091-102668148:-|nuORF	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.89837646484375	3	414.218003	1239.63218	-0.65351	-0.0002707	2.4388	0.0010102	1.7853	0.00073949	414.2188468307565	25.035	0.21699	25.001	24.904	25.121	-0.034395					8	4	2	0	0	0	0.03519	1	1138	1138		27.047	4.4857	1	68694			41984	9902	29002	29053	47294	47294					0.02194914322490149
LKQNNTAKL	9	Unmodified	_LKQNNTAKL_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.307373046875	2	515.306198	1028.59784	-0.086728	-4.4692E-05	-1.7121	-0.00088227	-1.7988	-0.00092696	515.3052739178606	20.387	0.39297	20.22	20.002	20.395	-0.16774					22	7	4	0	0	0	0.29158	1	540	540		76.774	4.8967	1	293930			41985	10355	29003	29054	47295	47295					0.08468834225891442
LKQPLHRKS	9	Unmodified	_LKQPLHRKS_					0	0	0		nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.7724609375	2	553.843282	1105.67201	-0.08926	-4.9436E-05	-0.072536	-4.0174E-05	-0.1618	-8.961E-05	553.8431519424391	37.539	0.46415	37.346	37.152	37.616	-0.193					17	11	2	0	0	0	0.024541	1	3024	3024		19.104	8.238	1	165150			41986	1785	29004	29055	47296	47296					0.12340222108082344
LKQPLHRKS	9	Unmodified	_LKQPLHRKS_					0	0	0		nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.843282	1105.67201	-0.66621	-0.00036898	-0.37587	-0.00020817	-1.0421	-0.00057715	553.8431025272961	37.636	0.48526	37.636	37.45	37.936	0	0.12046	-0.00089236	NaN	19.104	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97133			41987	1785	29004	29055							0.12340222108082344
LKQPLHRKS	9	Unmodified	_LKQPLHRKS_					0	0	0		nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.843282	1105.67201	-1.1083	-0.00061381	0.073978	4.0972E-05	-1.0343	-0.00057284	553.8431431645265	37.579	0.45671	37.515	37.305	37.762	-0.063389	-0.00024045	-0.00039407	NaN	19.104	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90755			41988	1785	29004	29055							0.12340222108082344
LKQPLHRKS	9	Unmodified	_LKQPLHRKS_					0	0	0		nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.843282	1105.67201	-0.76961	-0.00042625	-0.028925	-1.602E-05	-0.79854	-0.00044227	553.843176358844	37.833	0.35692	37.865	37.6	37.957	0.032272	0.34986	-0.00050805	NaN	19.104	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92907			41989	1785	29004	29055							0.12340222108082344
LKQQHPLILK	10	Unmodified	_LKQQHPLILK_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.5875244140625	3	406.595802	1216.76558	0.0084746	3.4457E-06	4.0914	0.0016635	4.0998	0.001667	406.5973699688932	25.379	0.41798	25.207	25.118	25.536	-0.17151					12	9	2	0	0	0	0.03519	1	1204	1204		33.922	0	1	135930			41990	1240	29005	29056	47297	47297					0.16586521490489758
LKQQNAPL	8	Unmodified	_LKQQNAPL_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.22503662109375	2	456.269084	910.523616	0.35711	0.00016294	-0.6406	-0.00029229	-0.28349	-0.00012935	456.2687150266537	52.006	0.59171	51.822	51.561	52.153	-0.18404					26	15	2	0	0	0	0.027866	1	5353	5353		33.516	0	1	776760	+		41991	25045	29006	29057	47298	47298					0.06477491134353386
LKQQTGLATV	10	Unmodified	_LKQQTGLATV_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8138427734375	2	529.813856	1057.61316	-0.25549	-0.00013536	-0.42876	-0.00022716	-0.68426	-0.00036253	529.8136235246992	29.299	1.1432	29.149	28.869	30.012	-0.14952					73	26	5	0	0	0	0.37169	2	1768	1746;1768		101.6	13.846	1	4402800			41992	590	29007	29058	47299;47300	47300					0.0866570102307378
LKQRAIDQLQ	10	Unmodified	_LKQRAIDQLQ_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.90655517578125	3	404.906816	1211.69862	1.0447	0.00042302	-1.3452	-0.00054468	-0.30047	-0.00012166	404.906264810894	22.603	1.1513	22.677	22.365	23.516	0.073954					66	25	4	0	0	0	0.88431	1	757	757		55.084	16.33	1	1438400	+		41993	25074	29008	29059	47301	47301					0.10123866208732579
LKQSAAVEAD	10	Unmodified	_LKQSAAVEAD_					0	0	0			REV__ENST00000310574.7_1_2:27434356-27435124:-|nuORF	REV__ENST00000310574.7_1_2:27434356-27435124:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.274169921875	2	516.272021	1030.52949	0.31742	0.00016387	3.5521	0.0018339	3.8695	0.0019977	516.2737187534925	79.938	0.70923	79.719	79.369	80.079	-0.21923					43	16	5	0	0	0	0.59716	1	9577	9577		77.318	3.0625	1	975290	+		41994	30190	29009	29060	47302	47302					0.015445448553691676
LKQSINASN	9	Unmodified	_LKQSINASN_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.792236328125	2	487.766906	973.519259	-1.1491	-0.00056047	1.741	0.00084921	0.59196	0.00028874	487.7678202269237	36.127	0.48742	36.084	35.896	36.383	-0.042454					22	13	2	0	0	0	0.024418	1	2822	2822		23.523	0	1	455480	+		41995	27537	29010	29061	47303	47303					0.03143981920788974
LKQTGPPE	8	Unmodified	_LKQTGPPE_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.54742431640625	2	435.239993	868.465432	-1.0122	-0.00044057	0.75206	0.00032733	-0.26018	-0.00011324	435.24019799794996	29.241	0.90308	28.995	28.621	29.524	-0.24524					31	20	3	0	0	0	0.027866	1	1841	1841		6.3127	0	1	86008	+		41996	22109	29011	29062	47304	47304					0.025938094890875618
LKQTGPPE	8	Unmodified	_LKQTGPPE_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.54742431640625	2	435.239993	868.465432	-0.43642	-0.00018995	0.52964	0.00023052	0.093221	4.0573E-05	435.240185148359	29.889	0.59023	29.645	29.358	29.948	-0.24415					30	13	3	0	0	0	0.027866	1	1841	1841		6.3127	0	1	233980	+		41997	22109	29011	29062	47305	47305					0.025938094890875618
LKQYDPYEPI	10	Unmodified	_LKQYDPYEPI_					0	0	0		DGKG|p.H47Y|1|0.48|ENSG00000058866|chr3:186306906-186306906|G/A|missense_variant	DGKG|p.H47Y|1|0.48|ENSG00000058866|chr3:186306906-186306906|G/A|missense_variant	DGKG|p.H47Y|1|0.48|ENSG00000058866|chr3:186306906-186306906|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.51324462890625	3	422.551928	1264.63395	-0.50577	-0.00021371	-4.3927	-0.0018562	-4.8985	-0.0020699	422.5491644555133	31.998	0.35938	31.998	31.789	32.149	0					17	8	3	0	0	0	0.03519	1	2159	2159		30.569	10.942	1	60853			41998	634	29012	29063	47306	47306					0.012222466120874742
LKQYYLRVSL	10	Unmodified	_LKQYYLRVSL_					0	0	0		ENST00000427628.5_1_12:46123676-46149750:+|nuORF	ENST00000427628.5_1_12:46123676-46149750:+|nuORF	ENST00000427628.5_1_12:46123676-46149750:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.882568359375	2	641.87953	1281.74451	0.34309	0.00022022	4.1213	0.0026454	4.4644	0.0028656	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.0393	1	11635	11635		40.778	2.9666	1	1209200			41999	14117	29013	29064	47307	47307					0.11490511390979918
LKQYYLRVSL	10	Unmodified	_LKQYYLRVSL_					0	0	0		ENST00000427628.5_1_12:46123676-46149750:+|nuORF	ENST00000427628.5_1_12:46123676-46149750:+|nuORF	ENST00000427628.5_1_12:46123676-46149750:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8826293945312	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.1088	1	11904	11904		31.53	3.4483	1	3421300			42000	14117	29013	29064	47308	47308					0.11490511390979918
LKRAGGTF	8	Unmodified	_LKRAGGTF_					0	0	0		ENST00000452079.5_2_1:3656745-3659715:-|nuORF	ENST00000452079.5_2_1:3656745-3659715:-|nuORF	ENST00000452079.5_2_1:3656745-3659715:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.26300048828125	2	425.250695	848.486836	-1.2296	-0.0005229	1.5841	0.00067366	0.35451	0.00015075	425.2514368033295	37.876	0.34742	37.793	37.636	37.984	-0.082516					13	9	2	0	0	0	0.027866	1	3141	3141		17.365	0	1	127570			42001	14531	29014	29065	47309	47309					0.056532393084808064
LKRANVQRRMA	11	Unmodified	_LKRANVQRRMA_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.7376403808594	3	448.266462	1341.77756	-0.020172	-9.0423E-06	-3.2402	-0.0014525	-3.2604	-0.0014615	448.26603803206524	41.941	0.7226	41.967	41.601	42.323	0.026012					59	20	4	0	0	0	0.024792	1	3696	3696		9.2118	0	1	735040			42002	3794	29015	29066	47310	47310					0.12033814962023826
LKRANVQRRMA	11	Unmodified	_LKRANVQRRMA_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	448.266462	1341.77756	-0.06484	-2.9066E-05	-3.0388	-0.0013622	-3.1036	-0.0013913	448.2659896550818	41.987	0.7593	41.855	41.491	42.251	-0.13219	-0.025247	0.00050484	NaN	9.2118	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	681260			42003	3794	29015	29066							0.12033814962023826
LKRAPGPK	8	Unmodified	_LKRAPGPK_					0	0	0		ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7593688964844	2	433.782162	865.549771	0.8657	0.00037552	-1.1503	-0.00049898	-0.2846	-0.00012346	433.78083017801293	87.114	0.2513	87.135	86.927	87.178	0.021263					7	5	2	0	0	0	0.027866	1	10854	10854		10.866	0	1	30151			42004	2398	29016	29067	47311	47311					0.11161805096503485
LKRARFSL	8	Unmodified	_LKRARFSL_					0	0	0			REV__nc|ENSG00000178773|Q9UBL6|CPNE7	REV__nc|ENSG00000178773|Q9UBL6|CPNE7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.26763916015625	2	495.813993	989.613434	0.51561	0.00025565	-2.1055	-0.0010439	-1.5899	-0.00078827	495.8136047596443	39.403	0.1716	39.403	39.323	39.495	0					6	4	2	0	0	0	0.027866	1	3395	3395		7.6903	0	1	35350	+		42005	27206	29017	29068	47312	47312					0.11821165533592648
LKRCFIATI	9	Unmodified	_LKRCFIATI_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7960205078125	2	532.817887	1063.62122	-1.2478	-0.00066483	4.43	0.0023604	3.1822	0.0016955	532.8201336824872	35.39	0.78857	35.39	34.981	35.769	0					44	20	3	0	0	0	0.024021	1	2772	2772		49.442	2.9848	1	461260	+		42006	31793	29018	29069	47313	47313					0.0919555673888226
LKRCFIATI	9	Unmodified	_LKRCFIATI_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.817887	1063.62122	-1.358	-0.00072357	4.5998	0.0024509	3.2418	0.0017273	532.8202159555202	35.212	0.79392	35.19	34.674	35.468	-0.021763	-0.1079	0.00017824	NaN	49.442	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401580	+		42007	31793	29018	29069							0.0919555673888226
LKRCHDGRNAM	11	Unmodified	_LKRCHDGRNAM_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2663269042969	3	434.216891	1299.62884	-0.031508	-1.3681E-05	2.5975	0.0011279	2.566	0.0011142	434.2182877686625	24.628	0.8666	24.453	24.21	25.077	-0.17484					24	19	2	0	0	0	0.024727	1	1077	1077		12.957	0	1	106520	+		42008	28526	29019	29070	47314	47314					-0.008986590031781816
LKRCKIAGV	9	Unmodified	_LKRCKIAGV_					0	0	0		ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7833557128906	2	494.310229	986.605906	-0.37716	-0.00018643	-3.2026	-0.0015831	-3.5797	-0.0017695	494.3087758068506	56.514	0.55999	56.611	56.321	56.881	0.097897					33	15	3	0	0	0	0.02309	1	6234	6234		47.916	7.343	1	421040			42009	4792	29020	29071	47315	47315					0.11206689941673176
LKRDDSAWNPW	11	Unmodified	_LKRDDSAWNPW_					0	0	0			REV__SYT16|p.H282Tfs*31|1|0.36|ENSG00000139973|chr14:62075238-62075239|-/A|frameshift_variant	REV__SYT16|p.H282Tfs*31|1|0.36|ENSG00000139973|chr14:62075238-62075239|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.7568359375	3	463.229959	1386.66805	0.15234	7.0568E-05	-3.0457	-0.0014108	-2.8933	-0.0013403	463.2284415961736	20.671	1.31	20.503	19.955	21.265	-0.16774					56	26	3	0	0	0	0.024792	1	584	584		13.508	0	1	76386	+		42010	23977	29021	29072	47316	47316					-0.009819121763030125
LKRDKEKKNN	10	Unmodified	_LKRDKEKKNN_					0	0	0		nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.8903503417969	3	424.917604	1271.73098	-0.52861	-0.00022462	0.54582	0.00023193	0.017209	7.3124E-06	424.91781356262305	20.455	0.14764	20.35	20.227	20.375	-0.10477					4	2	2	0	0	0	0.03519	1	523	523		19.263	1.7947	1	24613			42011	18243	29022	29073	47317	47317					0.10598653611759801
LKRDTGLAL	9	Unmodified	_LKRDTGLAL_					0	0	0			REV__nc|ENSG00000143847|O75335-2|PPFIA4	REV__nc|ENSG00000143847|O75335-2|PPFIA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.77642822265625	2	493.803291	985.59203	0.34734	0.00017152	-0.92462	-0.00045658	-0.57728	-0.00028506	493.8026865052888	32.75	0.52784	32.557	32.293	32.821	-0.19261					21	12	2	0	0	0	0.022756	1	2249	2249		68.787	0	1	178700	+		42012	24291	29023	29074	47318	47318					0.09865735714208768
LKRDWTVEL	9	Unmodified	_LKRDWTVEL_					0	0	0		UBE2S|p.A105V|1|0.11|ENSG00000108106|chr19:55404316-55404316|G/A|missense_variant	UBE2S|p.A105V|1|0.11|ENSG00000108106|chr19:55404316-55404316|G/A|missense_variant	UBE2S|p.A105V|1|0.11|ENSG00000108106|chr19:55404316-55404316|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	580.3054809570312	2	580.327131	1158.63971	0.87135	0.00050567	-1.9971	-0.001159	-1.1257	-0.0006533	580.325959422537	64.195	0.66764	64.24	63.975	64.642	0.045502					38	17	3	0	0	0	0.022411	1	7478	7478		90.37	0	1	1320200			42013	38122	29024	29075	47319	47319					0.0667338991440829
LKREKDHLVQ	10	Unmodified	_LKREKDHLVQ_					0	0	0		ERC1|p.R967H|1|0.36|ENSG00000082805|chr12:1371952-1371952|G/A|missense_variant	ERC1|p.R967H|1|0.36|ENSG00000082805|chr12:1371952-1371952|G/A|missense_variant	ERC1|p.R967H|1|0.36|ENSG00000082805|chr12:1371952-1371952|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.51806640625	3	422.582333	1264.72517	0.18203	7.6923E-05	-0.80148	-0.00033869	-0.61945	-0.00026177	422.58201861333265	30.83	0.21174	30.678	30.553	30.765	-0.15231					6	4	2	0	0	0	0.03519	1	1981	1981		9.6461	0	1	25776			42014	17619	29025	29076	47320	47320					0.1033955510006308
LKRELTRVMET	11	Unmodified	_LKRELTRVMET_					0	0	0			REV__ENST00000326105.6_1_1:175013764-175014370:-|nuORF	REV__ENST00000326105.6_1_1:175013764-175014370:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2881164550781	3	459.262383	1374.76532	0.02625	1.2056E-05	-3.4285	-0.0015746	-3.4023	-0.0015625	459.26058861821787	52.77	0.28279	52.58	52.348	52.631	-0.18982					8	6	2	0	0	0	0.024834	1	5461	5461		8.7993	3.6569	1	160610	+		42015	19241	29026	29077	47321	47321					0.09292733708298329
LKREWRQVRV	10	Unmodified	_LKREWRQVRV_					0	0	0		ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.27752685546875	3	457.277355	1368.81024	0.91178	0.00041693	-4.2022	-0.0019216	-3.2904	-0.0015046	457.276747621906	97.175	1.7213	97.039	96.06	97.781	-0.13671					96	38	4	0	0	0	1.1165	1	12027	12027		19.263	3.2559	1	276490			42016	12753	29027	29078	47322	47322					0.14058345356511381
LKREWRQVRV	10	Unmodified	_LKREWRQVRV_					0	0	0		ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	457.277355	1368.81024	0.69951	0.00031987	-6.2347	-0.002851	-5.5352	-0.0025311	457.276679473175	96.809	2.0783	96.818	95.692	97.77	0.0089111	-0.23408	-0.0019878	NaN	19.263	129	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247280			42017	12753	29027	29078							0.14058345356511381
LKREWRQVRV	10	Unmodified	_LKREWRQVRV_					0	0	0		ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	457.277355	1368.81024	1.2548	0.00057381	-5.3702	-0.0024557	-4.1154	-0.0018819	457.27643931883074	97.117	1.9488	97.117	95.866	97.815	-3.0518E-05	0.06454	-0.00080191	NaN	19.263	91	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224360			42018	12753	29027	29078							0.14058345356511381
LKREWRQVRV	10	Unmodified	_LKREWRQVRV_					0	0	0		ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	457.277355	1368.81024	0.95255	0.00043558	-4.9156	-0.0022478	-3.963	-0.0018122	457.2765382479756	97.267	1.872	97.144	95.94	97.812	-0.12368	0.091325	-0.00017817	NaN	19.263	99	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309790			42019	12753	29027	29078							0.14058345356511381
LKREWRQVRV	10	Unmodified	_LKREWRQVRV_					0	0	0		ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	ENST00000360013.7_2_3:124281811-124351390:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	457.277355	1368.81024	-0.10748	-4.9147E-05	-2.6383	-0.0012064	-2.7458	-0.0012556	457.277144940612	97.305	1.8852	97.144	95.918	97.803	-0.16106	0.091756	0.0029458	NaN	19.263	90	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240530			42020	12753	29027	29078							0.14058345356511381
LKRFDFDY	8	Unmodified	_LKRFDFDY_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3179321289062	2	552.279649	1102.54475	-0.40642	-0.00022446	-1.171	-0.00064672	-1.5774	-0.00087118	552.2788066431848	64.456	0.31363	64.222	64.021	64.334	-0.2345					11	7	2	0	0	0	0.027866	1	7313	7313		42.474	10.52	1	116110			42021	8016	29028	29079	47323	47323					-0.0024254355676021078
LKRFDGSTDSI	11	Unmodified	_LKRFDGSTDSI_					0	0	0			REV__ENSG00000182718|ENST00000451270|ANXA2	REV__ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.55023193359375	3	413.550698	1237.63027	-0.49749	-0.00020574	-0.11395	-4.7124E-05	-0.61144	-0.00025286	413.550692351935	29.631	1.5607	29.631	29.073	30.634	0					57	38	2	0	0	0	0.97516	1	1830	1830		42.338	0	1	5348700	+		42022	27505	29029	29080	47324	47324					0.020955768382464157
LKRFFSKLL	9	Unmodified	_LKRFFSKLL_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23;REV__ENSG00000107863|ENST00000396432|ARHGAP21	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.279541015625	2	576.368601	1150.72265	-1.4459	-0.0008334	2.2537	0.0012989	0.80772	0.00046554	576.3697508337738	40.433	1.0727	40.203	40.008	41.08	-0.23021					38	28	2	0	0	0	0.024506	1	3450	3450		16.473	6.7675	1	265530	+		42023	29195;21693	29030	29081	47325	47325					0.15331751433086538
LKRFFSKLL	9	Unmodified	_LKRFFSKLL_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23;REV__ENSG00000107863|ENST00000396432|ARHGAP21	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.368601	1150.72265	-0.83534	-0.00048146	1.8143	0.0010457	0.97899	0.00056426	576.3695328042749	40.288	0.95687	40.288	39.843	40.8	0	0.0031379	0.00045875	NaN	16.473	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397120	+		42024	29195;21693	29030	29081							0.15331751433086538
LKRFFSKLL	9	Unmodified	_LKRFFSKLL_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23;REV__ENSG00000107863|ENST00000396432|ARHGAP21	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	576.368601	1150.72265	0.34628	0.00019959	0.79837	0.00046016	1.1447	0.00065974	576.3689507168469	40.346	0.90274	40.234	39.978	40.881	-0.11223	-0.050954	-0.00071238	NaN	16.473	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340500	+		42025	29195;21693	29030	29081							0.15331751433086538
LKRFFSKLL	9	Unmodified	_LKRFFSKLL_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23;REV__ENSG00000107863|ENST00000396432|ARHGAP21	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.368601	1150.72265	-0.92151	-0.00053113	1.9579	0.0011285	1.0364	0.00059733	576.3695714466411	40.536	0.83633	40.559	40.274	41.111	0.023003	0.27454	0.00062424	NaN	16.473	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571730	+		42026	29195;21693	29030	29081							0.15331751433086538
LKRGKPAP	8	Unmodified	_LKRGKPAP_					0	0	0			REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF	REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.23675537109375	2	433.782162	865.549771	-0.077754	-3.3728E-05	-1.1272	-0.00048897	-1.205	-0.0005227	433.78164096828317	72.589	0.12323	72.391	72.289	72.412	-0.19811					4	2	2	0	0	0	0.027866	1	8506	8506		33.516	8.0654	1	18907	+		42027	32286	29031	29082	47326	47326					0.11161805096492117
LKRGTKGL	8	Unmodified	_LKRGTKGL_					0	0	0		nc|ENSG00000114805|Q4KWH8-2|PLCH1;PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1;PLCH1|p.G158Vfs*5|1|0.21|ENSG00000114805|chr3:155586156-155586156|C/-|frameshift_variant;PLCH1|p.Y208Lfs*19|1|0.21|ENSG00000114805|chr3:155583584-155583585|-/A|frameshift_variant	nc|ENSG00000114805|Q4KWH8-2|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7640686035156	2	436.787444	871.560336	-0.20924	-9.1394E-05	-0.3597	-0.00015711	-0.56894	-0.00024851	436.7873026644659	26.777	0.33727	26.615	26.46	26.797	-0.16132					12	7	2	0	0	0	0.027866	1	1415	1415		38.806	8.3025	1	41130			42028	3386	29032	29083	47327	47327					0.11941787750936328
LKRHFKLYL	9	Unmodified	_LKRHFKLYL_					0	0	0		nc|ENSG00000151694|P78536-2|ADAM17;ENSG00000151694|ENST00000310823|ADAM17;ADAM17-ITGB1BP1|2|fusion;ENST00000478059.1_1_2:9667906-9695734:-|nuORF;ADAM17-ITGB1BP1|1|fusion	nc|ENSG00000151694|P78536-2|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.58740234375	3	406.588759	1216.74445	0.41999	0.00017076	-4.0929	-0.0016641	-3.6729	-0.0014934	406.5873798753871	25.209	2.1595	25.038	24.647	26.806	-0.17078					142	54	6	0	0	0	0.5973	1	1224	1224		52.937	5.709	1	30937000			42029	6223	29033	29084	47328	47328					0.14474556181653497
LKRIFRLL	8	Unmodified	_LKRIFRLL_					0	0	0		ENSG00000164885|ENST00000485972|CDK5;nc|ENSG00000164885|Q00535-2|CDK5	ENSG00000164885|ENST00000485972|CDK5	ENSG00000164885|ENST00000485972|CDK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8082275390625	2	529.863486	1057.71242	-0.63141	-0.00033456	1.0277	0.00054456	0.39633	0.00021	529.8642480324219	73.636	0.25797	73.365	73.241	73.499	-0.27126					11	6	3	0	0	0	0.027866	1	8941	8941		0	0	1	353180			42030	7334	29034	29085	47329	47329					0.18587188498509022
LKRIHLAR	8	Unmodified	_LKRIHLAR_					0	0	0			REV__ENSG00000196935|ENST00000355086|SRGAP1	REV__ENSG00000196935|ENST00000355086|SRGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7869567871094	2	503.83526	1005.65597	-1.097	-0.0005527	1.7719	0.00089275	0.67491	0.00034004	503.83625170223735	37.601	0.23491	37.381	37.271	37.506	-0.2195					9	5	2	0	0	0	0.027866	1	3039	3039		25.45	0	1	68692	+		42031	28241	29035	29086	47330	47330					0.15336560661842213
LKRKAAALKSQ	11	Unmodified	_LKRKAAALKSQ_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MSMS	OPSCC_40_ClassI_Rep-2	5	405.2635498046875	3	405.262823	1212.76664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.15	113.65	114.65	-0.14448								0	0	0	1.6511	1	13725	13725		8.4073	1.0075	1		+		42032	29117;37005	29036	29087	47331	47331					0.16876735859386827
LKRKANLL	8	Unmodified	_LKRKANLL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.3237609863281	2	478.324194	954.633835	0.080065	3.8297E-05	-0.60939	-0.00029148	-0.52932	-0.00025319	478.3237879505759	24.787	0.562	24.572	24.336	24.898	-0.2151					28	12	3	0	0	0	0.88442	1	1124	1124		52.299	0	1	980830			42033	3912	29037	29088	47332	47332					0.15470336193402545
LKRKFTGF	8	Unmodified	_LKRKFTGF_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-4|ZGRF1;nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;nc|ENSG00000138658|Q86YA3-6|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.803955078125	2	498.803094	995.591636	-0.076385	-3.8101E-05	0.61262	0.00030558	0.53624	0.00026748	498.8033988625939	52.928	2.1732	52.928	51.836	54.01	0					154	58	5	0	0	0	1.0574	1	5768	5768		26.796	0	1	12555000			42034	5262;15886	29038	29089	47333	47333					0.09366360785031702
LKRKFTGF	8	Unmodified	_LKRKFTGF_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-4|ZGRF1;nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;nc|ENSG00000138658|Q86YA3-6|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8033142089844	2	498.803094	995.591636	-0.048509	-2.4196E-05	1.2296	0.00061332	1.1811	0.00058913	498.80359687571143	52.78	1.1183	52.653	52.353	53.471	-0.12705					100	28	5	0	0	0	1.0574	1	5562	5562		26.796	0	1	22958000			42035	5262;15886	29038	29089	47334	47334					0.09366360785031702
LKRKFTGF	8	Unmodified	_LKRKFTGF_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-4|ZGRF1;nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;nc|ENSG00000138658|Q86YA3-6|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.8025817871094	2	498.803094	995.591636	-0.29606	-0.00014768	1.4127	0.00070466	1.1166	0.00055698	498.8036455447494	52.863	1.3878	52.673	52.389	53.777	-0.18982					105	37	5	0	0	0	0.97924	3	5580	5499;5554;5580		40.573	6.7195	1	10595000			42036	5262;15886	29038	29089	47335;47336;47337	47337					0.09366360785031702
LKRKGTSDI	9	Unmodified	_LKRKGTSDI_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant;ENST00000479391.6_3_9:98729892-98767017:+|nuORF	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MSMS	OPSCC_40_ClassI_Rep-3	6	509.3095397949219	2	509.306198	1016.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.7	1	83.561	83.061	84.061	-0.1386								0	0	0	0.5395	1	10096	10096		47.657	3.5405	1				42037	9104	29039	29090	47338	47338					0.09020834225896124
LKRKKDLHK	9	Unmodified	_LKRKKDLHK_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.3768920898438	2	583.380032	1164.74551	-1.1788	-0.00068768	-4.1778	-0.0024372	-5.3566	-0.0031249	583.3774143519692	46.265	1.1451	46.265	45.784	46.93	0					94	31	4	0	0	0	0.62163	1	4563	4563		51.335	8.9393	1	4403900	+		42038	25924	29040	29091	47339	47339					0.16972770550546556
LKRKKDLHK	9	Unmodified	_LKRKKDLHK_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	583.380032	1164.74551	-1.1788	-0.00068768	-4.1778	-0.0024372	-5.3566	-0.0031249	583.3774143519692	46.265	1.1451	46.265	45.784	46.93	0	0.092783	0.00013328	NaN	51.335	94	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4403900	+		42039	25924	29040	29091							0.16972770550546556
LKRKKDLHK	9	Unmodified	_LKRKKDLHK_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	583.380032	1164.74551	-1.9285	-0.001125	-3.3302	-0.0019428	-5.2587	-0.0030678	583.3778787378059	46.163	1.2173	46.011	45.683	46.9	-0.15157	-0.16107	0.0011222	NaN	51.335	98	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2736100	+		42040	25924	29040	29091							0.16972770550546556
LKRKKDLHK	9	Unmodified	_LKRKKDLHK_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	583.380032	1164.74551	0.20472	0.00011943	-5.2125	-0.0030409	-5.0078	-0.0029214	583.3766960584704	46.102	1.0429	46.154	45.83	46.873	0.051395	-0.018655	-0.001074	NaN	51.335	71	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547420	+		42041	25924	29040	29091							0.16972770550546556
LKRKKKAE	8	Unmodified	_LKRKKKAE_					0	0	0			REV__ENSG00000157895|ENST00000288757|C12orf43	REV__ENSG00000157895|ENST00000288757|C12orf43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7869873046875	2	500.834926	999.655299	-0.32157	-0.00016105	-1.3978	-0.00070009	-1.7194	-0.00086115	500.8344070600797	60.348	0.14342	60.348	60.294	60.437	0					5	3	2	0	0	0	0.027866	1	6931	6931		18.324	5.3652	1	88035	+		42042	25158	29041	29092	47340	47340					0.1554572122212221
LKRKNKTT	8	Unmodified	_LKRKNKTT_					0	0	0		ENST00000243298.2_1_X:103080673-103087036:-|nuORF	ENST00000243298.2_1_X:103080673-103087036:-|nuORF	ENST00000243298.2_1_X:103080673-103087036:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.30108642578125	2	494.816733	987.618913	0.17666	8.7416E-05	-4.0168	-0.0019876	-3.8401	-0.0019002	494.8147023568543	96.341	0.2487	96.204	96.142	96.391	-0.1367					8	5	2	0	0	0	0.027866	1	11899	11899		25.45	8.977	1	76493			42043	11291	29042	29093	47341	47341					0.12460844325414655
LKRKPFSI	8	Unmodified	_LKRKPFSI_					0	0	0			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7936706542969	2	494.818744	987.622936	0.24343	0.00012046	3.5468	0.001755	3.7903	0.0018755	494.8202931688215	18.973	0.29588	18.812	18.639	18.935	-0.16079					9	5	2	0	0	0	0.027866	1	380	380		17.365	4.4058	1	31949	+		42044	20949	29043	29094	47342	47342					0.12862933819133104
LKRKPFSI	8	Unmodified	_LKRKPFSI_					0	0	0			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.818744	987.622936	2.189	0.0010832	1.2083	0.00059789	3.3973	0.0016811	494.8191102753154	19.018	0.24637	18.784	18.632	18.878	-0.23345	-0.024967	-0.0010824	NaN	6.7355	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23890	+		42045	20949	29043	29094							0.12862933819133104
LKRKRKIV	8	Unmodified	_LKRKRKIV_					0	0	0		ENST00000574110.5_1_19:30499934-30499991:+|nuORF	ENST00000574110.5_1_19:30499934-30499991:+|nuORF	ENST00000574110.5_1_19:30499934-30499991:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7667846679688	2	520.874385	1039.73422	-0.77757	-0.00040502	-3.7273	-0.0019414	-4.5048	-0.0023465	520.8725571226533	47.504	0.22971	47.504	47.361	47.591	0					8	6	2	0	0	0	0.027866	1	4783	4783		8.2313	3.915	1	77810			42046	17079	29044	29095	47343	47343					0.21593993247051912
LKRLERVIIGY	11	Unmodified	_LKRLERVIIGY_					0	0	0		ENSG00000129696|ENST00000431156|TTI2;ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.7816162109375	3	453.953878	1358.8398	-0.01853	-8.4116E-06	-0.42476	-0.00019282	-0.44329	-0.00020123	453.95349411100085	41.338	0.38264	41.202	41.06	41.443	-0.13554					13	9	2	0	0	0	0.024828	1	3662	3662		5.6988	0	1	82338			42047	4367	29045	29096	47344	47344					0.1747386458202982
LKRLKIII	8	Unmodified	_LKRLKIII_					0	0	0		ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.83154296875	2	498.868237	995.721922	-1.2879	-0.0006425	-0.12597	-6.2845E-05	-1.4139	-0.00070535	498.8682318455896	44.556	0.21694	44.345	44.257	44.474	-0.21109					8	5	2	0	0	0	0.027866	1	4155	4155		33.516	6.7195	1	70259			42048	4543	29046	29097	47345	47345					0.22388956784027414
LKRLLKEQHL	10	Unmodified	_LKRLLKEQHL_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7753601074219	3	426.60659	1276.79794	0.72708	0.00031018	-1.0263	-0.00043784	-0.29926	-0.00012767	426.9416579105004	43.068	0.10681	43.099	43.046	43.153	0.030827					4	2	2	0	0	0	0.03519	1	3953	3953		6.6596	0	1	32686			42049	7313	29047	29098	47346	47346					0.1706130889351698
LKRLLTPE	8	Unmodified	_LKRLLTPE_					0	0	0		ENST00000397137.5_2_20:36146737-36146800:-|nuORF	ENST00000397137.5_2_20:36146737-36146800:-|nuORF	ENST00000397137.5_2_20:36146737-36146800:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2716369628906	2	485.30821	968.601866	1.1922	0.0005786	-1.195	-0.00057995	-0.002779	-1.3486E-06	485.30737932614124	63.747	0.68762	63.747	63.41	64.097	0					38	18	3	0	0	0	0.027866	1	7481	7481		40.573	13.777	1	570010			42050	13583	29048	29099	47347	47347					0.11630923719610564
LKRLRDSA	8	Unmodified	_LKRLRDSA_					0	0	0		ENST00000609454.5_1_22:38228707-38236239:-|nuORF;ENST00000407117.6_1_22:38234565-38240173:-|nuORF;ENSG00000100124|ENST00000215941|ANKRD54	ENST00000609454.5_1_22:38228707-38236239:-|nuORF	ENST00000609454.5_1_22:38228707-38236239:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2774963378906	2	479.793258	957.571963	0.31677	0.00015198	0.85297	0.00040925	1.1697	0.00056123	479.7930407681917	83.284	0.67573	83.114	82.734	83.409	-0.16916					20	15	2	0	0	0	0.027866	1	10065	10065		26.693	4.733	1	94279			42051	2138	29049	29100	47348	47348					0.0914798477426757
LKRLVSAL	8	Unmodified	_LKRLVSAL_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.24334716796875	2	450.30547	898.596387	-0.44731	-0.00020143	0.25634	0.00011543	-0.19097	-8.5996E-05	450.3054309240538	30.989	0.28275	30.804	30.702	30.984	-0.18503					10	6	2	0	0	0	0.027866	1	2037	2037		16.473	0	1	25561			42052	5928	29050	29101	47349	47349					0.1430324492780528
LKRNVIPE	8	Unmodified	_LKRNVIPE_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7978515625	2	484.798009	967.581465	1.4645	0.00071001	-2.4093	-0.001168	-0.94471	-0.00045799	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.845	1	6730	6730		55.504	0	1	119110000			42053	9890	29051	29102	47350	47350					0.09637753059803345
LKRPKVNN	8	Unmodified	_LKRPKVNN_					0	0	0			REV__ENSG00000012660|ENST00000304434|ELOVL5	REV__ENSG00000012660|ENST00000304434|ELOVL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7794189453125	2	484.803626	967.592698	-1.7462	-0.00084657	1.8818	0.00091229	0.13556	6.5721E-05	484.8045781252337	38.497	0.63477	38.524	38.397	39.032	0.027275					25	16	2	0	0	0	0.027866	1	3241	3241		38.806	9.6566	1	113840	+		42054	19945	29052	29103	47351	47351					0.10760575153938134
LKRPSFLD	8	Unmodified	_LKRPSFLD_					0	0	0		ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.751953125	2	488.284734	974.554916	-0.55922	-0.00027306	-3.5059	-0.0017119	-4.0651	-0.0019849	488.2831654869662	74.991	1.296	75.001	74.139	75.435	0.010376					53	31	2	0	0	0	0.027866	1	9171	9171		23.042	7.4007	1	108540			42055	6148	29053	29104	47352	47352					0.06662064168460802
LKRQMPRSL	9	Unmodified	_LKRQMPRSL_					0	0	0			REV__RC3H1|p.L453Sfs*18|1|0.09|ENSG00000135870|chr1:173965099-173965100|-/AAAAATAGAT|frameshift_variant;REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.80712890625	2	564.837143	1127.65973	0.25183	0.00014224	-3.4251	-0.0019346	-3.1733	-0.0017924	564.8350897552201	32.82	0.20203	32.628	32.536	32.738	-0.19262					6	4	2	0	0	0	0.024487	1	2296	2296		17.365	0	1	47525	+		42056	20215;23589	29054	29105	47353	47353					0.10100862373383279
LKRQVLLN	8	Unmodified	_LKRQVLLN_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.26971435546875	2	492.321651	982.62875	1.7179	0.00084578	-1.8578	-0.00091465	-0.13988	-6.8867E-05	492.32060853764193	36.522	1.196	36.324	35.776	36.972	-0.19829					60	30	3	0	0	0	0.027866	1	2773	2773		18.324	0	1	616090		+	42057	548	29055	29106	47354	47354					0.13674032330789032
LKRRRWHRRKS	11	Unmodified	_LKRRRWHRRKS_					0	0	0			REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	REV__ENST00000478577.1_1_17:54650436-54650553:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.7908325195312	3	526.994064	1577.96036	0.36132	0.00019041	2.1691	0.0011431	2.5304	0.0013335	527.3296777498675	18.923	0.14784	18.767	18.693	18.84	-0.15637					4	2	2	0	0	0	0.024892	1	365	365		5.4129	5.1007	1	11026	+		42058	33372	29056	29107	47355	47355					0.1945013013882999
LKRSKQVSL	9	Unmodified	_LKRSKQVSL_					0	0	0		ENST00000427177.5_1_17:75495565-75495685:+|nuORF	ENST00000427177.5_1_17:75495565-75495685:+|nuORF	ENST00000427177.5_1_17:75495565-75495685:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8198852539062	2	529.837665	1057.66078	0.90944	0.00048185	3.3227	0.0017605	4.2322	0.0022424	529.8390046108306	19.879	0.2961	19.645	19.473	19.769	-0.23345					8	5	2	0	0	0	0.0242	1	435	435		51.193	0	1	18898			42059	14103	29057	29108	47356	47356					0.13425400013943545
LKRSLMKF	8	Unmodified	_LKRSLMKF_					0	0	0			REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.75848388671875	2	511.812605	1021.61066	-0.67222	-0.00034405	3.3362	0.0017075	2.6639	0.0013634	511.8140542474462	26.076	0.3404	26.076	25.823	26.163	0					11	7	2	0	0	0	0.027866	1	1303	1303		18.324	0	1	61637	+		42060	22599	29058	29109	47357	47357					0.10071574084440726
LKRSNKEPV	9	Unmodified	_LKRSNKEPV_					0	0	0			REV__ENSG00000166855|ENST00000300107|CLPX	REV__ENSG00000166855|ENST00000300107|CLPX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2667846679688	2	535.819473	1069.62439	-0.11035	-5.9127E-05	-0.60729	-0.0003254	-0.71764	-0.00038453	535.8191628974164	49.204	0.76163	49.204	48.969	49.731	0					36	20	3	0	0	0	0.024209	1	5043	5043		47.657	0	1	878200	+		42061	26065	29059	29110	47358	47358					0.09236523117237994
LKRSNKSLD	9	Unmodified	_LKRSNKSLD_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2902221679688	2	530.809105	1059.60366	-0.12311	-6.535E-05	-1.9133	-0.0010156	-2.0364	-0.001081	530.8067714134264	86.484	1.1967	86.484	85.956	87.152	0					39	27	2	0	0	0	0.024495	1	10871	10871		34.173	3.6689	1	55853	+		42062	28456	29060	29111	47359	47359					0.0762393273755606
LKRTALGPGP	10	Unmodified	_LKRTALGPGP_					0	0	0		ENST00000380599.8_1_17:7369222-7369633:-|nuORF	ENST00000380599.8_1_17:7369222-7369633:-|nuORF	ENST00000380599.8_1_17:7369222-7369633:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.78826904296875	2	505.311284	1008.60801	-0.042793	-2.1624E-05	-0.63673	-0.00032175	-0.67953	-0.00034337	505.31084880845657	46.715	1.017	46.715	46.378	47.395	0					66	27	5	0	0	0	0.03519	1	4652	4652		18.324	0	1	4525200			42063	13314	29061	29112	47360	47360					0.1040544195111579
LKRTEDMTL	9	Unmodified	_LKRTEDMTL_					0	0	0			REV__ENSG00000123473|ENST00000371877|STIL	REV__ENSG00000123473|ENST00000371877|STIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.7666625976562	2	553.797349	1105.58014	-0.047276	-2.6181E-05	-3.5593	-0.0019711	-3.6065	-0.0019973	553.7947885909236	54.397	0.49517	54.151	53.949	54.445	-0.2453					23	14	2	0	0	0	0.023635	1	5803	5803		76.774	29.117	1	469610	+		42064	22700	29062	29113	47361	47361					0.03157750908712842
LKRTEDMTL	9	Unmodified	_LKRTEDMTL_					0	0	0			REV__ENSG00000123473|ENST00000371877|STIL	REV__ENSG00000123473|ENST00000371877|STIL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.797349	1105.58014	0.22052	0.00012212	-4.0885	-0.0022642	-3.868	-0.0021421	553.7946212473734	54.305	0.47697	54.108	53.889	54.366	-0.19739	-0.011148	-0.00031256	NaN	76.774	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380080	+		42065	22700	29062	29113							0.03157750908712842
LKRTVELA	8	Unmodified	_LKRTVELA_					0	0	0			REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2861022949219	2	465.292559	928.570566	-0.12816	-5.963E-05	0.7859	0.00036567	0.65775	0.00030604	465.29293668617026	62.016	0.58547	61.789	61.534	62.119	-0.22663					31	15	3	0	0	0	0.027866	1	7151	7151		45.952	8.7928	1	1932000	+		42066	19682	29063	29114	47362	47362					0.10342350685505153
LKRVAAPK	8	Unmodified	_LKRVAAPK_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000129824|ENST00000250784|RPS4Y1	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7879638671875	2	441.797812	881.581071	-0.31267	-0.00013814	2.2655	0.0010009	1.9528	0.00086275	441.79864784665284	42.707	0.27016	42.594	42.464	42.735	-0.11253					10	6	2	0	0	0	0.027866	1	3864	3864		19.36	0	1	55544			42067	10086	29064	29115	47363	47363					0.13554378130595524
LKRVERCW	8	Unmodified	_LKRVERCW_					0	0	0			REV__ENSG00000118503|ENST00000612899|TNFAIP3	REV__ENSG00000118503|ENST00000612899|TNFAIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2821655273438	2	545.302936	1088.59132	0.66199	0.00036098	0.068327	3.7259E-05	0.73031	0.00039824	545.3044816590702	51.383	0.19723	51.202	51.143	51.34	-0.18071					6	4	2	0	0	0	0.027866	1	5271	5271		12.959	0	1	84682	+		42068	22410	29065	29116	47364	47364					0.0505661779352522
LKRVFGMF	8	Unmodified	_LKRVFGMF_					0	0	0		ENSG00000121764|ENST00000403528|HCRTR1;ENSG00000137252|ENST00000370862|HCRTR2	ENSG00000121764|ENST00000403528|HCRTR1;ENSG00000137252|ENST00000370862|HCRTR2	ENSG00000121764|ENST00000403528|HCRTR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7843933105469	2	499.286223	996.557893	0.13003	6.4925E-05	-0.30848	-0.00015402	-0.17845	-8.9095E-05	499.2858833747437	47.094	0.62913	47.094	46.659	47.289	0					31	16	3	0	0	0	0.027866	1	4689	4689		35.201	3.6709	1	1621700			42069	3887;5105	29066	29117	47365	47365					0.05947616021637714
LKRVGFGH	8	Unmodified	_LKRVGFGH_					0	0	0			REV__nc|ENSG00000125851|P16519-3|PCSK2	REV__nc|ENSG00000125851|P16519-3|PCSK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.28924560546875	2	457.271961	912.52937	-0.28989	-0.00013256	3.232	0.0014779	2.9421	0.0013453	457.2736938715462	93.743	0.24773	93.739	93.538	93.786	-0.0042038					9	5	2	0	0	0	0.027866	1	11871	11871		23.037	8.3726	1	165460	+		42070	22852	29067	29118	47366	47366					0.06960634436711644
LKRVKDIGY	9	Unmodified	_LKRVKDIGY_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2767333984375	2	546.332216	1090.64988	-1.336	-0.00072992	1.6851	0.00092062	0.34906	0.0001907	546.8351232195613	29.252	0.17384	29.007	28.881	29.055	-0.24524					5	3	2	0	0	0	0.024541	1	1771	1771		26.796	1.3459	1	19124			42071	5359	29068	29119	47367	47367					0.10817997639651367
LKRWQIGE	8	Unmodified	_LKRWQIGE_					0	0	0		ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI	ENSG00000173611|ENST00000336505|SCAI	ENSG00000173611|ENST00000336505|SCAI	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2958374023438	2	515.295633	1028.57671	-0.26039	-0.00013418	-0.37368	-0.00019255	-0.63407	-0.00032673	515.2956224158916	73.619	0.82855	73.342	72.926	73.755	-0.2769					77	20	5	0	0	0	0.46709	1	8648	8648		88.643	3.482	1	13984000			42072	8391	29069	29120	47368	47368					0.06356868917032443
LKRYGVALVV	10	Unmodified	_LKRYGVALVV_					0	0	0			REV__AADACL3|p.Q198Kfs*14|1|0.29|ENSG00000188984|chr1:12725526-12725526|T/-|frameshift_variant	REV__AADACL3|p.Q198Kfs*14|1|0.29|ENSG00000188984|chr1:12725526-12725526|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.321533203125	2	559.358234	1116.70191	-0.17345	-9.7023E-05	3.3104	0.0018517	3.137	0.0017547	559.3605859031413	67.879	0.23623	67.591	67.511	67.748	-0.28834					6	5	2	0	0	0	0.03519	1	8087	8087		35.618	5.3006	1	28468	+		42073	19042	29070	29121	47369	47369					0.1482316105341397
LKSALISLKN	10	Unmodified	_LKSALISLKN_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.84912109375	2	543.847699	1085.68084	-0.80649	-0.00043861	4.3152	0.0023468	3.5087	0.0019082	543.850093839186	77.186	1.037	76.975	76.708	77.745	-0.21087					44	24	2	0	0	0	0.80817	1	9511	9511		60.118	6.7668	1	1257600	+		42074	37004	29071	29122	47370	47370					0.1414315095389611
LKSARHGG	8	Unmodified	_LKSARHGG_					0	0	0		ENST00000460788.5_1_2:241655965-241656310:-|nuORF	ENST00000460788.5_1_2:241655965-241656310:-|nuORF	ENST00000460788.5_1_2:241655965-241656310:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.2373962402344	2	413.238119	824.461684	0.18653	7.708E-05	0.26478	0.00010942	0.45131	0.0001865	413.2380543501921	75.996	3.7473	75.751	74.958	78.705	-0.24455					141	93	3	0	0	0	1.0239	1	9367	9367		33.516	3.0119	1	885270			42075	14663	29072	29123	47371	47371					0.04243184505901354
LKSCPKINPKI	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LKSCPKINPKI_					1	0	0			REV__ENST00000400324.8_1_13:60240656-60240770:-|nuORF	REV__ENST00000400324.8_1_13:60240656-60240770:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8822021484375	2	641.881216	1281.74788	-2.5036	-0.001607	4.256	0.0027318	1.7524	0.0011248	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	0.93459	1	11566	11566		49.536	13.089	1	1400600	+		42076	31848	29073	29124	47372	47372					0.11827438173349947
LKSCPKINPKI	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LKSCPKINPKI_					1	0	0			REV__ENST00000400324.8_1_13:60240656-60240770:-|nuORF	REV__ENST00000400324.8_1_13:60240656-60240770:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.882080078125	2	641.881216	1281.74788	-0.57437	-0.00036868	2.3388	0.0015012	1.7644	0.0011326	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	0.97926	1	11701	11701		41.427	11.109	1	1351900	+		42077	31848	29073	29124	47373	47373					0.11827438173349947
LKSDLYTL	8	Unmodified	_LKSDLYTL_					0	0	0			REV__ENSG00000150261|ENST00000279783|OR8K1	REV__ENSG00000150261|ENST00000279783|OR8K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.20123291015625	2	476.771126	951.527698	-0.14965	-7.135E-05	-2.7192	-0.0012964	-2.8688	-0.0013678	476.7697678582933	40.147	0.29444	39.998	39.821	40.116	-0.1497					12	7	2	0	0	0	0.027866	1	3470	3470		44.117	0	1	103750	+		42078	24712	29074	29125	47374	47374					0.04999535837418989
LKSDQSFL	8	Unmodified	_LKSDQSFL_					0	0	0			REV__nc|ENSG00000124789|P49790-3|NUP153	REV__nc|ENSG00000124789|P49790-3|NUP153	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.25372314453125	2	469.2531	936.491647	0.78166	0.0003668	-0.67633	-0.00031737	0.10533	4.9427E-05	469.2526722336673	76.895	0.7887	76.909	76.572	77.361	0.013504					30	18	2	0	0	0	0.93274	1	9404	9404		47.916	0	1	871270	+		42079	36632	29075	29126	47375	47375					0.0208607866057946
LKSERVILEI	10	Unmodified	_LKSERVILEI_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.5844421386719	3	400.583451	1198.72852	0.99202	0.00039739	0.77678	0.00031116	1.7688	0.00070855	400.58371914235164	25.217	1.0128	25.046	24.647	25.659	-0.17078					73	23	4	0	0	0	0.58878	1	1175	1175		78.264	9.4176	1	1369400			42080	5657	29076	29127	47376	47376					0.13710805154119043
LKSGDRIL	8	Unmodified	_LKSGDRIL_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2375793457031	2	451.276909	900.539266	-0.2638	-0.00011905	0.25497	0.00011506	-0.0088387	-3.9887E-06	451.27694378684623	27.018	0.62546	26.776	26.41	27.035	-0.24217					30	14	3	0	0	0	0.027866	1	1484	1484		26.796	14.589	1	431290			42081	10581	29077	29128	47377	47377					0.08501777651417797
LKSGDRIL	8	Unmodified	_LKSGDRIL_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.276909	900.539266	-0.29639	-0.00013376	0.38365	0.00017313	0.087251	3.9375E-05	451.2768423051794	26.835	0.63086	26.667	26.301	26.931	-0.16816	-0.17411	4.7422E-05	NaN	26.796	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369560			42082	10581	29077	29128							0.08501777651417797
LKSIKRTD	8	Unmodified	_LKSIKRTD_					0	0	0		ENST00000336505.10_1_9:127783037-127789160:-|nuORF	ENST00000336505.10_1_9:127783037-127789160:-|nuORF	ENST00000336505.10_1_9:127783037-127789160:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.8002624511719	2	480.795466	959.57638	0.82601	0.00039714	-1.3155	-0.00063248	-0.48948	-0.00023534	480.79469273542105	21.849	0.47713	21.672	21.445	21.923	-0.17721					17	9	3	0	0	0	0.027866	1	750	750		29.15	0	1	21185			42083	12410	29078	29129	47378	47378					0.09497449197169772
LKSKLVEVI	9	Unmodified	_LKSKLVEVI_					0	0	0		nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1	nc|ENSG00000187164|A0MZ66-5|SHTN1	nc|ENSG00000187164|A0MZ66-5|SHTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8394165039062	2	514.839342	1027.66413	-0.67642	-0.00034825	0.19895	0.00010243	-0.47747	-0.00024582	514.839388077999	57.258	0.89933	57.091	56.786	57.686	-0.1672					86	23	5	0	0	0	0.10174	1	6251	6251		110.12	6.0631	1	12877000			42084	9612	29079	29130	47379	47379					0.15140650067951356
LKSKLVEVI	9	Unmodified	_LKSKLVEVI_					0	0	0		nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1	nc|ENSG00000187164|A0MZ66-5|SHTN1	nc|ENSG00000187164|A0MZ66-5|SHTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.8392944335938	2	514.839342	1027.66413	-0.39829	-0.00020506	-0.13492	-6.9463E-05	-0.53322	-0.00027452	514.8392398933679	57.414	0.89743	57.18	56.843	57.74	-0.23363					79	23	5	0	0	0	0.12914	1	6279	6279		104.06	21.306	1	13100000			42085	9612	29079	29130	47380	47380					0.15140650067951356
LKSKRQLL	8	Unmodified	_LKSKRQLL_					0	0	0			REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3293762207031	2	493.329476	984.6444	0.24799	0.00012234	-0.41556	-0.00020501	-0.16757	-8.2666E-05	493.3291385920245	18.441	0.69345	18.237	18.014	18.708	-0.20371					33	13	4	0	0	0	0.46709	1	287	287		88.643	0	1	663730	+		42086	27023	29080	29131	47381	47381					0.15146318847837392
LKSKRQLL	8	Unmodified	_LKSKRQLL_					0	0	0			REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	REV__nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.32891845703125	2	493.329476	984.6444	3.1556	0.0015568	-3.1182	-0.0015383	0.037481	1.849E-05	493.3278214110012	18.442	0.69865	18.199	17.974	18.673	-0.24256					33	13	5	0	0	0	1.0009	1	295	295		37.159	1.5408	1	693760	+		42087	27023	29080	29131	47382	47382					0.15146318847837392
LKSKSTRKP	9	Unmodified	_LKSKSTRKP_					0	0	0		ENSG00000057935|ENST00000405094|MTA3;ENST00000478602.1_1_2:42946162-42950180:+|nuORF	ENSG00000057935|ENST00000405094|MTA3	ENSG00000057935|ENST00000405094|MTA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3033447265625	2	522.82984	1043.64513	0.032564	1.7025E-05	-0.55826	-0.00029187	-0.52569	-0.00027485	522.8295450054269	21.217	0.62321	21.04	20.774	21.397	-0.17721					31	12	4	0	0	0	0.024405	1	629	629		35.618	0	1	529680			42088	1208	29081	29132	47383	47383					0.1250511349687713
LKSLDRLK	8	Unmodified	_LKSLDRLK_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7740783691406	2	486.813659	971.612765	-0.56704	-0.00027604	-0.31561	-0.00015364	-0.88265	-0.00042969	486.8132359636449	27.376	0.17396	27.208	27.099	27.273	-0.16816					5	3	2	0	0	0	0.027866	1	1499	1499		49.442	0	1	52197	+		42089	23247	29082	29133	47384	47384					0.12582326093900065
LKSLEELN	8	Unmodified	_LKSLEELN_					0	0	0		ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.76910400390625	2	473.266207	944.517862	0.060179	2.8481E-05	0.60517	0.00028641	0.66535	0.00031489	473.26635523563414	75.919	0.83416	75.675	75.153	75.987	-0.24455					46	22	3	0	0	0	0.027866	1	9346	9346		40.573	8.6178	1	2101600			42090	4522	29083	29134	47385	47385					0.043383478320379254
LKSLEQMSP	9	Unmodified	_LKSLEQMSP_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7953491210938	2	516.773342	1031.53213	-0.18683	-9.6548E-05	-3.6497	-0.0018861	-3.8366	-0.0019826	517.2739207979239	23.454	0.58068	23.274	23.157	23.738	-0.17989					16	13	2	0	0	0	0.024457	1	987	987		29.15	12.676	1	96311	+		42091	23178	29084	29135	47386	47386					0.017626769887101545
LKSLKHKPI	9	Unmodified	_LKSLKHKPI_					0	0	0			REV__ENSG00000116198|ENST00000378230|CEP104	REV__ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2413330078125	2	532.352951	1062.69135	-0.75229	-0.00040048	0.0060372	3.2139E-06	-0.74625	-0.00039727	532.3529987573053	33.949	0.27245	33.742	33.587	33.86	-0.20696					8	6	2	0	0	0	0.024541	1	2459	2459		14.137	3.8719	1	56658	+		42092	22267	29085	29136	47387	47387					0.16251178398988486
LKSLLSKAR	9	Unmodified	_LKSLLSKAR_					0	0	0		SWAP70-WEE1|1|fusion	SWAP70-WEE1|1|fusion	SWAP70-WEE1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2812805175781	2	508.334759	1014.65496	0.29847	0.00015172	3.0505	0.0015507	3.3489	0.0017024	508.33623768384166	84.326	0.77499	84.188	83.845	84.62	-0.13789					33	17	3	0	0	0	0.023297	1	10186	10186		74.165	12.058	1	168160			42093	38045	29086	29137	47388	47388					0.1482230150227224
LKSLQLYVCS	10	Carbamidomethyl (C)	_LKSLQLYVC(Carbamidomethyl (C))S_	LKSLQLYVC(1)S		LKSLQLYVC(73)S		0	1	0		ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8309936523438	2	605.828649	1209.64274	2.3972	0.0014523	0.54553	0.0003305	2.9428	0.0017828	605.8289087646085	17.573	0.54125	17.573	17.399	17.94	0					22	10	4	0	0	0	0.6365	1	181	181		72.879	6.45	1	230220			42094	1108	29087	29138	47389	47389	17				0.046308969769143005
LKSLSRKT	8	Unmodified	_LKSLSRKT_					0	0	0		ENST00000300289.9_1_15:44057730-44058107:+|nuORF	ENST00000300289.9_1_15:44057730-44058107:+|nuORF	ENST00000300289.9_1_15:44057730-44058107:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.26739501953125	2	466.798009	931.581465	0.14487	6.7627E-05	-1.3394	-0.00062525	-1.1946	-0.00055762	466.79724693453505	19.96	0.2864	19.792	19.669	19.955	-0.16774					7	5	2	0	0	0	0.027866	1	500	500		2.9294	0	1	39008			42095	11900	29088	29139	47390	47390					0.11293753059783285
LKSLVPVE	8	Unmodified	_LKSLVPVE_					0	0	0		nc|ENSG00000196730|P53355-3|DAPK1;ENSG00000196730|ENST00000408954|DAPK1	nc|ENSG00000196730|P53355-3|DAPK1	nc|ENSG00000196730|P53355-3|DAPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.22576904296875	2	442.776211	883.537869	-0.36934	-0.00016354	-2.8342	-0.0012549	-3.2036	-0.0014185	442.77493165579045	29.85	0.32484	29.859	29.717	30.042	0.0086708					10	7	2	0	0	0	0.027866	1	1859	1859		40.778	9.2484	1	45424			42096	9916	29089	29140	47391	47391					0.09144143562650697
LKSLYFKL	8	Unmodified	_LKSLYFKL_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.30010986328125	2	506.315503	1010.61645	-0.35929	-0.00018191	-0.42841	-0.00021691	-0.7877	-0.00039882	506.3172187145082	32.197	0.18952	32.26	32.163	32.352	0.062885					6	4	2	0	0	0	0.027866	1	2177	2177		85.359	21.152	1	28122			42097	3145	29090	29141	47392	47392					0.11156995867759179
LKSNEKKIY	9	Unmodified	_LKSNEKKIY_					0	0	0			REV__nc|ENSG00000198625|O15151-4|MDM4	REV__nc|ENSG00000198625|O15151-4|MDM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7940673828125	2	561.829506	1121.64446	-0.34714	-0.00019503	-0.37899	-0.00021293	-0.72612	-0.00040796	561.8292940431307	52.437	0.36289	52.247	52.067	52.43	-0.18982					15	8	2	0	0	0	0.024319	1	5435	5435		47.657	0	1	177870	+		42098	28440	29091	29142	47393	47393					0.08850274057181196
LKSNEKKIY	9	Unmodified	_LKSNEKKIY_					0	0	0			REV__nc|ENSG00000198625|O15151-4|MDM4	REV__nc|ENSG00000198625|O15151-4|MDM4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.829506	1121.64446	-0.40847	-0.00022949	0.15887	8.9257E-05	-0.2496	-0.00014023	561.8295104184983	52.372	0.74153	52.372	52.085	52.827	0	0.059475	0.00018791	NaN	39.253	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1349900	+		42099	28440	29091	29142							0.08850274057181196
LKSNEKKIY	9	Unmodified	_LKSNEKKIY_					0	0	0			REV__nc|ENSG00000198625|O15151-4|MDM4	REV__nc|ENSG00000198625|O15151-4|MDM4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	561.829506	1121.64446	0.021118	1.1864E-05	-0.29085	-0.00016341	-0.26973	-0.00015154	561.8292569596355	52.454	0.62488	52.306	52.057	52.682	-0.14723	-0.0058332	-0.00031741	NaN	39.253	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1184200	+		42100	28440	29091	29142							0.08850274057181196
LKSNEKKIY	9	Unmodified	_LKSNEKKIY_					0	0	0			REV__nc|ENSG00000198625|O15151-4|MDM4	REV__nc|ENSG00000198625|O15151-4|MDM4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	561.829506	1121.64446	-0.5041	-0.00028322	0.03765	2.1153E-05	-0.46645	-0.00026206	561.829428150905	52.291	0.66988	52.383	52.079	52.749	0.091938	0.070695	5.1705E-05	NaN	39.253	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897770	+		42101	28440	29091	29142							0.08850274057181196
LKSPKRICP	9	Unmodified	_LKSPKRICP_					0	0	0		nc|ENSG00000104221|Q9HAW0-2|BRF2;ENSG00000104221|ENST00000220659|BRF2	nc|ENSG00000104221|Q9HAW0-2|BRF2	nc|ENSG00000104221|Q9HAW0-2|BRF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7435302734375	2	521.315512	1040.61647	-0.87736	-0.00045738	-2.129	-0.0011099	-3.0064	-0.0015673	521.3136458564065	44.117	0.50321	43.897	43.709	44.212	-0.21939					22	13	3	0	0	0	0.024539	1	4051	4051		27.882	4.8398	1	237300			42102	2554	29092	29143	47394	47394					0.09778672596098659
LKSPRCAEP	9	Unmodified	_LKSPRCAEP_					0	0	0		ENST00000322428.9_1_8:145159646-145159745:+|nuORF	ENST00000322428.9_1_8:145159646-145159745:+|nuORF	ENST00000322428.9_1_8:145159646-145159745:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.78765869140625	2	500.765852	999.51715	0.69465	0.00034786	-4.0589	-0.0020325	-3.3642	-0.0016847	501.26528765040877	72.16	0.45668	72.17	71.915	72.371	0.0097733					17	11	2	0	0	0	0.024495	1	8714	8714		19.997	9.1312	1	99927			42103	12224	29093	29144	47395	47395					0.01737229911339
LKSRTVPLE	9	Unmodified	_LKSRTVPLE_					0	0	0		ENST00000294383.6_1_1:55533016-55533118:-|nuORF	ENST00000294383.6_1_1:55533016-55533118:-|nuORF	ENST00000294383.6_1_1:55533016-55533118:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7830200195312	2	521.816399	1041.61824	-0.26652	-0.00013907	1.1859	0.00061881	0.91936	0.00047974	521.8164237538979	67.821	1.0024	67.821	67.367	68.369	0					38	25	2	0	0	0	0.024292	1	8107	8107		58.782	0	1	378470			42104	11813	29094	29145	47396	47396					0.0991000488568261
LKSSARPSSV	10	Unmodified	_LKSSARPSSV_					0	0	0		CON__A2AB72	CON__A2AB72	CON__A2AB72	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2966918945312	2	516.29583	1030.57711	-0.41218	-0.00021281	1.7967	0.00092765	1.3846	0.00071484	516.2966569634165	36.966	1.0255	36.746	36.365	37.39	-0.2195					79	25	4	0	0	0	0.54901	1	2925	2925		82.75	11.934	1	5890400		+	42105	477	29095	29146	47397	47397					0.06304243846238933
LKSSVKAVI	9	Unmodified	_LKSSVKAVI_					0	0	0		nc|ENSG00000105928|O60443-2|GSDME;nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	nc|ENSG00000105928|O60443-2|GSDME	nc|ENSG00000105928|O60443-2|GSDME	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.81048583984375	2	472.810585	943.606617	-1.1179	-0.00052858	1.2592	0.00059538	0.14129	6.6802E-05	472.81083558307154	21.695	0.91733	21.482	21.266	22.183	-0.2128					30	18	3	0	0	0	0.59099	1	678	678		53.351	6.585	1	276640			42106	2735	29096	29147	47398	47398					0.1325580786236742
LKSSVKAVI	9	Unmodified	_LKSSVKAVI_					0	0	0		nc|ENSG00000105928|O60443-2|GSDME;nc|ENSG00000105928|O60443-3|GSDME;ENSG00000105928|ENST00000645220|GSDME	nc|ENSG00000105928|O60443-2|GSDME	nc|ENSG00000105928|O60443-2|GSDME	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.810585	943.606617	-0.01868	-8.8321E-06	0.53928	0.00025498	0.5206	0.00024615	472.81038150445323	21.727	0.86151	21.537	21.275	22.137	-0.19072	0.056579	0.00020767	NaN	53.351	33	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206010			42107	2735	29096	29147							0.1325580786236742
LKSTTVLKP	9	Unmodified	_LKSTTVLKP_					0	0	0			REV__ENST00000342992.10_3_2:179439865-179439952:-|nuORF	REV__ENST00000342992.10_3_2:179439865-179439952:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.78509521484375	2	493.815867	985.617182	0.16773	8.2829E-05	-0.51972	-0.00025665	-0.35199	-0.00017382	493.815586261504	25.69	0.25415	25.771	25.581	25.835	0.08009					8	5	2	0	0	0	0.024527	1	1170	1170		24.519	4.5224	1	32279	+		42108	30659	29097	29148	47399	47399					0.12379790516797584
LKSVIKKD	8	Unmodified	_LKSVIKKD_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2866516113281	2	465.80276	929.590967	-0.1366	-6.3631E-05	-0.18853	-8.782E-05	-0.32514	-0.00015145	465.80258331046343	93.807	0.6777	93.807	93.645	94.322	0					24	16	2	0	0	0	0.027866	1	11928	11928		27.882	13.745	1	116730	+		42109	21813	29098	29149	47400	47400					0.12335521345323741
LKSVIKKDP	9	Unmodified	_LKSVIKKDP_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7442016601562	2	514.329142	1026.64373	0.68398	0.00035179	-0.19557	-0.00010059	0.48841	0.0002512	514.328912407934	70.272	0.71634	69.979	69.467	70.184	-0.29291					42	19	4	0	0	0	0.024466	1	8461	8461		47.657	40.922	1	2224300	+		42110	21813	29099	29150	47401	47401					0.13147479408144136
LKSWEAGLMKT	11	Unmodified	_LKSWEAGLMKT_					0	0	0			REV__ENSG00000064961|ENST00000333651|HMG20B	REV__ENSG00000064961|ENST00000333651|HMG20B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.2689514160156	3	421.897041	1262.66929	-0.2015	-8.5011E-05	4.2025	0.001773	4.001	0.001688	422.2332136466161	45.822	0.17116	45.822	45.714	45.885	0					7	4	2	0	0	0	0.024797	1	4492	4492		15.337	0.64381	1	105210	+		42111	20297	29100	29151	47402	47402					0.04846585868222064
LKSYAERQ	8	Unmodified	_LKSYAERQ_					0	0	0			REV__ENSG00000146263|ENST00000683635|MMS22L	REV__ENSG00000146263|ENST00000683635|MMS22L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.25531005859375	2	497.769448	993.524344	-0.61141	-0.00030434	2.5343	0.0012615	1.9229	0.00095717	497.7702372409701	43.604	0.43272	43.604	43.367	43.8	0					20	11	2	0	0	0	0.027866	1	4069	4069		47.916	0	1	293480	+		42112	24475	29101	29152	47403	47403					0.02732285783417865
LKSYIPDL	8	Unmodified	_LKSYIPDL_					0	0	0		ENST00000374423.7_1_2:207169553-207169727:+|nuORF	ENST00000374423.7_1_2:207169553-207169727:+|nuORF	ENST00000374423.7_1_2:207169553-207169727:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.773681640625	2	474.773668	947.532783	0.66162	0.00031412	-0.79343	-0.0003767	-0.1318	-6.2575E-05	474.77321307172184	99.111	1.2212	99.122	98.522	99.743	0.010239					65	27	3	0	0	0	1.0574	1	12690	12690		26.796	1.3459	1	2003000			42113	13114	29102	29153	47404	47404					0.056918397000458754
LKTADHQM	8	Unmodified	_LKTADHQM_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1;REV__ENSG00000122728|ENST00000242310|TAF1L	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2695617675781	2	472.236927	942.459301	-0.15728	-7.4273E-05	-0.042162	-1.9911E-05	-0.19944	-9.4184E-05	472.23739079356346	40.027	0.44906	39.878	39.591	40.04	-0.1497					14	11	2	0	0	0	0.027866	1	3446	3446		29.15	0	1	76427	+		42114	36762;22661	29103	29154	47405	47405					-0.014230320140768526
LKTALKLVN	9	Unmodified	_LKTALKLVN_					0	0	0			REV__nc|ENSG00000006576|Q8N3S3-4|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.31317138671875	2	500.331685	998.648816	0.36538	0.00018281	1.5844	0.00079273	1.9498	0.00097555	500.33349385062576	76.175	0.82291	76.186	75.788	76.611	0.011635					33	20	3	0	0	0	0.024292	1	9353	9353		32.812	12.816	1	566090	+		42115	19834	29104	29155	47406	47406					0.14943783270734912
LKTAPSQVIRR	11	Unmodified	_LKTAPSQVIRR_					0	0	0		nc|ENSG00000110042|Q9Y2E6-2|DTX4;ENSG00000110042|ENST00000227451|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.8920288085938	2	634.893503	1267.77245	0.12287	7.8009E-05	-2.1001	-0.0013333	-1.9772	-0.0012553	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0392	1	13031	13031		28.081	4.5588	1	1729500			42116	3014	29105	29156	47407	47407					0.1492783437106482
LKTDCSTT	8	Unmodified	_LKTDCSTT_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.74798583984375	2	434.707668	867.400783	0.21143	9.1911E-05	1.4539	0.00063204	1.6654	0.00072395	434.7062156117527	65.288	0.37448	65.326	65.081	65.455	0.037384					16	10	3	0	0	0	0.027866	1	7638	7638		47.916	12.297	1	239320	+		42117	19916	29106	29157	47408	47408					-0.038221333792193946
LKTEIKNI	8	Unmodified	_LKTEIKNI_					0	0	0		ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant;ENSG00000073331|ENST00000650871|ALPK1;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29150390625	2	479.800217	957.585882	-0.049965	-2.3973E-05	-0.65426	-0.00031391	-0.70422	-0.00033789	479.79994306575855	27.321	1.3138	27.164	26.844	28.158	-0.15664					56	31	4	0	0	0	0.027866	1	1505	1505		44.117	0	1	9005200			42118	65	29107	29158	47409	47409					0.1053921748269886
LKTFRQLENL	10	Unmodified	_LKTFRQLENL_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.5206604003906	3	421.24695	1260.71902	0.057005	2.4013E-05	0.51935	0.00021877	0.57635	0.00024279	421.247158275923	34.389	0.69704	34.165	33.762	34.459	-0.22412					34	17	3	0	0	0	0.03519	1	2474	2474		17.833	5.0214	1	425560	+		42119	20686	29108	29159	47410	47410					0.09909036868589283
LKTFRQLENL	10	Unmodified	_LKTFRQLENL_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	421.24695	1260.71902	-0.098742	-4.1595E-05	0.79279	0.00033396	0.69405	0.00029237	421.24735308551664	34.336	0.77498	34.129	33.71	34.485	-0.20696	-0.016678	7.8345E-05	NaN	8.7993	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269030	+		42120	20686	29108	29159							0.09909036868589283
LKTFRQLENL	10	Unmodified	_LKTFRQLENL_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	421.24695	1260.71902	-0.53153	-0.00022391	0.98518	0.000415	0.45365	0.0001911	421.24744720606816	34.319	0.751	34.143	33.701	34.452	-0.17557	-0.0024587	0.00032147	NaN	8.7993	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345690	+		42121	20686	29108	29159							0.09909036868589283
LKTGRLSLP	9	Unmodified	_LKTGRLSLP_					0	0	0		ENST00000489520.2_1_12:66151931-66152630:-|nuORF	ENST00000489520.2_1_12:66151931-66152630:-|nuORF	ENST00000489520.2_1_12:66151931-66152630:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7850646972656	2	492.813659	983.612765	-0.83302	-0.00041052	0.76751	0.00037824	-0.065515	-3.2287E-05	492.8139197961783	57.077	0.61557	56.91	56.676	57.291	-0.1672					40	16	3	0	0	0	0.024344	1	6178	6178		45.972	7.1661	1	1601700			42122	15412	29109	29160	47411	47411					0.12030326093884014
LKTHKIIRTGE	11	Unmodified	_LKTHKIIRTGE_					0	0	0		ZNF735|p.H347R|1|0.35|ENSG00000223614|chr7:64220091-64220091|A/G|missense_variant	ZNF735|p.H347R|1|0.35|ENSG00000223614|chr7:64220091-64220091|A/G|missense_variant	ZNF735|p.H347R|1|0.35|ENSG00000223614|chr7:64220091-64220091|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	648.3909912109375	2	648.393336	1294.77212	-0.12697	-8.2326E-05	0.13319	8.6362E-05	0.0062234	4.0352E-06	648.3939088012331	105.59	1.1539	105.42	105.27	106.42	-0.16216					77	47	4	0	0	0	1.0592	1	13157	13157		22.58	2.5829	1	1122300			42123	38207	29110	29161	47412	47412					0.13652414651232903
LKTIDEKE	8	Unmodified	_LKTIDEKE_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2499694824219	2	488.27149	974.528426	-0.54791	-0.00026753	-2.4591	-0.0012007	-3.007	-0.0014682	488.26932594316423	26.086	0.25989	26.063	25.864	26.124	-0.023088					7	5	2	0	0	0	0.027866	1	1286	1286		69.628	21.712	1	27897			42124	7355	29111	29162	47413	47413					0.04014330486484141
LKTIFMWY	8	Unmodified	_LKTIFMWY_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.3218994140625	2	551.293714	1100.57287	-0.51436	-0.00028357	-0.089904	-4.9564E-05	-0.60427	-0.00033313	551.2935463252218	46.8	0.79408	46.606	46.165	46.959	-0.19387					48	22	3	0	0	0	0.027866	1	4585	4585		8.2313	0	1	1684300			42125	9190	29112	29163	47414	47414					0.026610630989580386
LKTIFMWY	8	Unmodified	_LKTIFMWY_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.293714	1100.57287	-0.68299	-0.00037653	-5.0463	-0.002782	-5.7293	-0.0031585	551.7932521900298	46.896	0.15273	46.955	46.842	46.995	0.059097	0.22417	-0.0049922	NaN	25.45	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32517			42126	9190	29112	29163							0.026610630989580386
LKTIKIISR	9	Unmodified	_LKTIKIISR_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|9|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|9|1|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|9|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3306884765625	2	536.366059	1070.71756	-1.1007	-0.00059039	2.2534	0.0012086	1.1526	0.00061824	536.3671461529576	46.71	0.26412	46.517	46.345	46.609	-0.19387					13	7	2	0	0	0	0.024539	1	4491	4491		14.865	0	1	237180			42127	17902	29113	29164	47415	47415					0.18503447570446951
LKTIQTTREG	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LKTIQTTREG_					1	0	0		ENST00000584950.5_1_17:16843810-16852120:-|nuORF	ENST00000584950.5_1_17:16843810-16852120:-|nuORF	ENST00000584950.5_1_17:16843810-16852120:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	594.8323364257812	2	594.832777	1187.651	-0.53829	-0.00032019	-4.1199	-0.0024507	-4.6582	-0.0027709	594.8302407261693	58.354	0.89481	58.176	57.895	58.79	-0.17775					48	21	3	0	0	0	0.80817	1	6398	6398		60.118	8.7828	1	1699400			42128	17217	29114	29165	47416	47416					0.06468167217894916
LKTIQTTREG	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LKTIQTTREG_					1	0	0		ENST00000584950.5_1_17:16843810-16852120:-|nuORF	ENST00000584950.5_1_17:16843810-16852120:-|nuORF	ENST00000584950.5_1_17:16843810-16852120:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	594.832777	1187.651	-0.71057	-0.00042267	-3.7158	-0.0022103	-4.4264	-0.002633	594.8305271198092	58.167	0.66682	57.977	57.75	58.417	-0.19018	-0.11295	0.0006422	NaN	60.118	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1226000			42129	17217	29114	29165							0.06468167217894916
LKTISPEKY	9	Unmodified	_LKTISPEKY_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7806396484375	2	539.810782	1077.60701	-0.96928	-0.00052323	-2.7991	-0.001511	-3.7683	-0.0020342	539.8093261436971	28.292	0.3283	28.123	27.966	28.294	-0.16897					13	7	2	0	0	0	0.024457	1	1625	1625		37.159	0	1	76381	+		42130	23084	29115	29166	47417	47417					0.0713118279156788
LKTKRCDIP	9	Unmodified	_LKTKRCDIP_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;RIF1|p.M1082L|1|0.4|ENSG00000080345|chr2:151462258-151462258|A/T|missense_variant	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.758056640625	2	537.310426	1072.6063	-0.68429	-0.00036768	-3.532	-0.0018978	-4.2162	-0.0022654	537.3091189983005	39.582	0.23005	39.357	39.242	39.472	-0.2257					7	5	2	0	0	0	0.024506	1	3352	3352		16.473	0	1	80612			42131	1685	29116	29167	47418	47418					0.0729006487085826
LKTLAGHE	8	Unmodified	_LKTLAGHE_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.74835205078125	2	434.747985	867.481417	-0.20708	-9.0027E-05	0.081859	3.5588E-05	-0.12522	-5.4439E-05	434.7481411347547	65.246	1.5339	65.246	64.69	66.224	0					145	41	5	0	0	0	0.71063	1	7796	7796		66.429	3.123	1	102340000			42132	5061	29117	29168	47419	47419					0.04237515726003949
LKTLAGHE	8	Unmodified	_LKTLAGHE_					0	0	0		ENSG00000136875|ENST00000374198|PRPF4;nc|ENSG00000136875|O43172|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	ENSG00000136875|ENST00000374198|PRPF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7484436035156	2	434.747985	867.481417	0.16778	7.2943E-05	-0.27376	-0.00011901	-0.10597	-4.6072E-05	434.7479913700864	65.234	1.4639	65.272	64.78	66.244	0.037384					144	39	5	0	0	0	0.47665	1	7592	7592		87.754	2.3948	1	104280000			42133	5061	29117	29168	47420	47420					0.04237515726003949
LKTLCSRCVV	10	Unmodified	_LKTLCSRCVV_					0	0	0			REV__ENST00000290650.8_1_15:43250282-43256162:-|nuORF	REV__ENST00000290650.8_1_15:43250282-43256162:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7855224609375	2	561.312112	1120.60967	0.25142	0.00014112	1.9309	0.0010838	2.1823	0.0012249	561.3131528916565	68.39	0.9233	68.159	67.516	68.439	-0.23048					38	22	3	0	0	0	0.03519	1	7824	7824		54.776	21.964	1	355780	+		42134	29936	29118	29169	47421	47421					0.054189916532095594
LKTLDPQPI	9	Unmodified	_LKTLDPQPI_					0	0	0			REV__nc|ENSG00000197111|Q15366-7|PCBP2	REV__nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3037109375	2	512.8055	1023.59645	-0.29594	-0.00015176	0.015568	7.9832E-06	-0.28037	-0.00014377	512.8053473418729	62.694	0.75893	62.757	62.483	63.242	0.062767					34	18	3	0	0	0	0.024374	1	7293	7293		40.778	0	1	1659100	+		42135	28265	29119	29170	47422	47422					0.08559200137142398
LKTLIAQTQSD	11	Unmodified	_LKTLIAQTQSD_					0	0	0			REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.8770751953125	3	406.562715	1216.66632	0.67588	0.00027479	0.14499	5.8946E-05	0.82087	0.00033373	406.8970349063704	50.366	0.41993	50.086	49.839	50.258	-0.27977					14	10	2	0	0	0	0.024738	1	5065	5065		31.068	10.231	1	75211	+		42136	26395	29120	29171	47423	47423					0.06665034015077254
LKTLKAKAP	9	Unmodified	_LKTLKAKAP_					0	0	0			REV__nc|ENSG00000172493|P51825|AFF1	REV__nc|ENSG00000172493|P51825|AFF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29229736328125	2	485.326402	968.638252	-1.2031	-0.00058389	1.5585	0.00075636	0.35538	0.00017248	485.32699716087023	80.712	2.1226	80.736	80.276	82.399	0.023903					112	51	4	0	0	0	0.024466	1	10168	10168		18.262	0	1	1543000	+		42137	26678	29121	29172	47424	47424					0.15267800616311433
LKTLKKFRRIY	11	Unmodified	_LKTLKKFRRIY_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|143|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|143|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|143|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.3107604980469	3	489.317039	1464.92929	0.88482	0.00043296	2.0694	0.0010126	2.9542	0.0014455	489.31795513863915	17.537	0.59748	17.383	17.209	17.807	-0.15403					17	11	2	0	0	0	0.024898	1	215	215		6.001	2.5923	1	29619			42138	17852	29122	29173	47425	47425					0.2154211926140306
LKTLKPSV	8	Unmodified	_LKTLKPSV_					0	0	0		ENST00000401395.1_1_22:25465993-25466170:+|nuORF	ENST00000401395.1_1_22:25465993-25466170:+|nuORF	ENST00000401395.1_1_22:25465993-25466170:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2796936035156	2	443.292028	884.569503	0.036333	1.6106E-05	-0.58825	-0.00026077	-0.55192	-0.00024466	443.29165539006567	54.905	0.22021	54.905	54.794	55.014	0					8	5	2	0	0	0	0.027866	1	6037	6037		34.173	5.023	1	109480			42139	13668	29123	29174	47426	47426					0.12260136316604076
LKTLRFVK	8	Unmodified	_LKTLRFVK_					0	0	0		NR0B1|p.L334Tfs*55|1|0.13|ENSG00000169297|chrX:30308364-30308365|-/T|frameshift_variant;nc|ENSG00000169297|P51843-2|NR0B1;ENSG00000169297|ENST00000378970|NR0B1	NR0B1|p.L334Tfs*55|1|0.13|ENSG00000169297|chrX:30308364-30308365|-/T|frameshift_variant	NR0B1|p.L334Tfs*55|1|0.13|ENSG00000169297|chrX:30308364-30308365|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.81060791015625	2	502.834394	1003.65424	-0.20326	-0.00010221	-1.0545	-0.00053021	-1.2577	-0.00063242	502.8330662948101	69.206	0.10689	69.206	69.131	69.238	0					4	2	2	0	0	0	0.027866	1	8321	8321		79.451	47.496	1	53534			42140	7924	29124	29175	47427	47427					0.15255506853225143
LKTLYPIIG	9	Unmodified	_LKTLYPIIG_					0	0	0		ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2841796875	2	509.320786	1016.62702	0.036116	1.8395E-05	-0.53824	-0.00027414	-0.50212	-0.00025574	509.3204449826166	69.335	1.3187	69.087	68.542	69.861	-0.24858					59	31	4	0	0	0	0.022924	1	8139	8139		73.975	22.639	1	1016800			42141	8352	29125	29176	47428	47428					0.11936978522180652
LKTLYPIIG	9	Unmodified	_LKTLYPIIG_					0	0	0		ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.320786	1016.62702	-0.6714	-0.00034196	0.27999	0.0001426	-0.39141	-0.00019935	509.32081765218646	69.465	0.92142	69.198	68.741	69.662	-0.26724	0.040547	0.00056374	NaN	73.975	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	983940			42142	8352	29125	29176							0.11936978522180652
LKTLYPIIG	9	Unmodified	_LKTLYPIIG_					0	0	0		ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.320786	1016.62702	-0.33028	-0.00016822	-0.042158	-2.1472E-05	-0.37244	-0.00018969	509.32057812775076	69.303	0.90633	69.08	68.567	69.474	-0.22245	-0.076929	0.00023558	NaN	73.975	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890870			42143	8352	29125	29176							0.11936978522180652
LKTMLFTND	9	Unmodified	_LKTMLFTND_					0	0	0			REV__ENSG00000155026|ENST00000404406|RSPH10B	REV__ENSG00000155026|ENST00000404406|RSPH10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.2933349609375	2	541.781167	1081.54778	-0.42741	-0.00023156	-3.9818	-0.0021572	-4.4092	-0.0023888	542.2816894702192	59.193	0.21715	59.279	59.134	59.351	0.085682					6	5	2	0	0	0	0.024447	1	6668	6668		19.104	0	1	63438	+		42144	24988	29126	29177	47429	47429					0.01026963505751155
LKTPGGGW	8	Unmodified	_LKTPGGGW_					0	0	0		ENST00000371843.7_1_1:48865081-48865123:-|nuORF	ENST00000371843.7_1_1:48865081-48865123:-|nuORF	ENST00000371843.7_1_1:48865081-48865123:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.26873779296875	2	408.224146	814.433738	-0.040284	-1.6445E-05	3.5503	0.0014493	3.51	0.0014329	408.22401147644564	28.848	0.53588	28.848	28.613	29.149	0					18	12	2	0	0	0	0.027866	1	1693	1693		33.516	0	1	105980			42145	13017	29127	29178	47430	47430					0.01909861525814449
LKTQGRREV	9	Unmodified	_LKTQGRREV_					0	0	0		ENSG00000167103|ENST00000388747|PIP5KL1;ENST00000490773.5_1_9:130687427-130690958:-|nuORF;ENST00000498783.5_1_9:130687427-130690958:-|nuORF	ENSG00000167103|ENST00000388747|PIP5KL1	ENSG00000167103|ENST00000388747|PIP5KL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8198852539062	2	543.822547	1085.63054	-0.91661	-0.00049847	-1.4423	-0.00078435	-2.3589	-0.0012828	543.8203714709691	47.785	1.7405	47.632	47.265	49.005	-0.153					176	50	6	0	0	0	0.43628	1	4834	4834		63.534	3.4156	1	24001000			42146	7649	29128	29179	47431	47431					0.09115041348741215
LKTQVSTT	8	Unmodified	_LKTQVSTT_					0	0	0		ENST00000304926.7_1_16:3440119-3447566:-|nuORF	ENST00000304926.7_1_16:3440119-3447566:-|nuORF	ENST00000304926.7_1_16:3440119-3447566:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.25213623046875	2	439.2531	876.491647	-0.43149	-0.00018953	0.071916	3.1589E-05	-0.35958	-0.00015795	439.2526196526615	89.96	1.6578	89.96	88.978	90.636	0					92	39	4	0	0	0	1.0574	1	11368	11368		20.947	0	1	2093000			42147	11983	29129	29180	47432	47432					0.04846078660580133
LKTRNPEAR	9	Unmodified	_LKTRNPEAR_					0	0	0		nc|ENSG00000187288|Q96AQ7-4|CIDEC	nc|ENSG00000187288|Q96AQ7-4|CIDEC	nc|ENSG00000187288|Q96AQ7-4|CIDEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2932739257812	2	542.814722	1083.61489	-1.3096	-0.00071087	-3.4524	-0.001874	-4.762	-0.0025849	542.8127319371072	39.135	0.49701	39.036	38.914	39.411	-0.098755					17	13	2	0	0	0	0.024319	1	3381	3381		47.657	3.5405	1	202150			42148	18603	29130	29181	47433	47433					0.07642754831681486
LKTSPPLI	8	Unmodified	_LKTSPPLI_					0	0	0		FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant	FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant	FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7479553222656	2	434.778754	867.542954	0.8446	0.00036721	2.3593	0.0010258	3.2039	0.001393	434.77965027233586	65.665	0.75245	65.665	65.392	66.145	0					27	19	2	0	0	0	0.027866	1	7758	7758		87.754	18.967	1	94752			42149	17642	29131	29182	47434	47434					0.10388447425293634
LKTSVIKG	8	Unmodified	_LKTSVIKG_					0	0	0		ENST00000487133.1_1_X:119739298-119742228:+|nuORF;ENSG00000232119|ENST00000371317|MCTS1;ENSG00000101898|ENST00000394552|MCTS2;nc|ENSG00000232119|Q9ULC4-3|MCTS1;ENST00000464508.1_1_20:30135258-30136223:+|nuORF;ENST00000487964.5_1_20:30135258-30136595:+|nuORF;ENST00000479096.1_1_20:30135258-30136578:+|nuORF	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2749328613281	2	423.276378	844.538203	0.13071	5.5328E-05	-3.0954	-0.0013102	-2.9647	-0.0012549	423.274939460662	110.55	0.42538	110.42	110.14	110.57	-0.12524					34	13	3	0	0	0	1.0574	1	13571	13571		12.207	3.3845	1	122380			42150	2358	29132	29183	47435	47435					0.10971563282521402
LKTTDISIE	9	Unmodified	_LKTTDISIE_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8441467285156	2	510.284597	1018.55464	-0.49803	-0.00025413	-1.7881	-0.00091241	-2.2861	-0.0011665	510.2829208049824	76.302	0.48131	76.073	76.003	76.485	-0.22843					15	11	2	0	0	0	0.024354	1	9399	9399		47.916	3.7988	1	166780			42151	9453	29133	29184	47436	47436					0.046105996579512976
LKTTHNSAF	9	Unmodified	_LKTTHNSAF_					0	0	0		ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	ENSG00000143061|ENST00000369486|IGSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7752380371094	2	509.769448	1017.52434	-0.45748	-0.00023321	-2.2314	-0.0011375	-2.6889	-0.0013707	509.7680211451157	44.561	0.40792	44.598	44.375	44.783	0.036903					28	11	4	0	0	0	0.024511	1	4178	4178		32.812	6.0163	1	438620			42152	5605	29134	29185	47437	47437					0.016282857834198694
LKTTLAALK	9	Unmodified	_LKTTLAALK_					0	0	0		nc|ENSG00000122417|Q9ULJ1-6|ODF2L;nc|ENSG00000122417|Q9ULJ1-3|ODF2L;ENSG00000122417|ENST00000460698|ODF2L;ENST00000534092.5_1_1:86824370-86836727:-|nuORF;nc|ENSG00000122417|Q9ULJ1-5|ODF2L	nc|ENSG00000122417|Q9ULJ1-6|ODF2L	nc|ENSG00000122417|Q9ULJ1-6|ODF2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.7611389160156	2	479.81841	957.622267	0.52961	0.00025412	3.6884	0.0017697	4.218	0.0020239	479.8200111350379	74.65	0.46159	74.375	74.176	74.638	-0.27573					16	10	2	0	0	0	0.024495	1	8795	8795		26.693	0	1	94865			42153	3923	29135	29186	47438	47438					0.14176094379411097
LKTVEAPTVA	10	Unmodified	_LKTVEAPTVA_					0	0	0			REV__nc|ENSG00000090097|P57723-2|PCBP4	REV__nc|ENSG00000090097|P57723-2|PCBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7909545898438	2	514.802957	1027.59136	-0.44921	-0.00023126	-1.1876	-0.00061139	-1.6368	-0.00084265	514.8023288174264	41.684	0.29077	41.707	41.564	41.854	0.023006					16	7	3	0	0	0	0.03519	1	3703	3703		45.972	1.5951	1	187750	+		42154	20869	29136	29187	47439	47439					0.0786689627452688
LKTVELPTL	9	Unmodified	_LKTVELPTL_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.31585693359375	2	507.3157	1012.61685	0.24268	0.00012312	-0.87819	-0.00044552	-0.63551	-0.00032241	507.3152387394442	69.209	1.5557	68.916	68.405	69.96	-0.29292					105	39	4	0	0	0	0.027092	1	8263	8263		143.89	12.855	1	23631000	+		42155	36745	29137	29188	47440	47440					0.11104370796954299
LKTVQINIK	9	Unmodified	_LKTVQINIK_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.80322265625	2	528.842416	1055.67028	0.88341	0.00046718	-1.4684	-0.00077653	-0.58496	-0.00030935	528.8414522375554	63.83	0.57444	63.83	63.558	64.133	0					36	15	3	0	0	0	0.024409	1	7525	7525		41.427	7.505	1	964450	+		42156	24020	29138	29189	47441	47441					0.14467168299438526
LKTVREQPL	9	Unmodified	_LKTVREQPL_					0	0	0			REV__nc|ENSG00000285791|Q8IWW8-2|ADHFE1	REV__nc|ENSG00000285791|Q8IWW8-2|ADHFE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7761840820312	2	542.329673	1082.64479	-0.91013	-0.00049359	0.26206	0.00014213	-0.64807	-0.00035147	542.3298192447248	66.881	0.81456	66.881	66.714	67.528	0					31	19	3	0	0	0	0.024477	1	8062	8062		35.618	0	1	680770	+		42157	24566	29139	29190	47442	47442					0.10677693777029162
LKTVRSNSN	9	Unmodified	_LKTVRSNSN_					0	0	0		ENSG00000181626|ENST00000587848|ANKRD62;nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENST00000434304.2_1_22:17154630-17158220:-|nuORF	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.808837890625	2	509.78563	1017.55671	-0.74821	-0.00038143	-3.7327	-0.0019029	-4.4809	-0.0022843	509.78355846434533	61.058	1.9186	60.805	60.336	62.255	-0.25374					73	47	2	0	0	0	0.024292	1	6875	6875		13.454	0	1	834020			42158	9054	29140	29191	47443	47443					0.048630731864250265
LKTWLRLL	8	Unmodified	_LKTWLRLL_					0	0	0			REV__ENST00000468074.1_1_3:136455757-136455820:-|nuORF	REV__ENST00000468074.1_1_3:136455757-136455820:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.9918212890625	2	521.84222	1041.66989	-0.72098	-0.00037624	-4.2035	-0.0021936	-4.9245	-0.0025698	522.3414630030106	54.923	0.15117	54.777	54.686	54.837	-0.14609					5	3	2	0	0	0	0.027866	1	5863	5863		12.959	0	1	55408	+		42159	33090	29141	29192	47444	47444					0.15071793370270825
LKVALRSLP	9	Unmodified	_LKVALRSLP_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40;ENST00000566703.1_1_16:30776326-30777900:+|nuORF	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.8316345214844	2	498.831852	995.649151	-0.7803	-0.00038924	0.49425	0.00024655	-0.28605	-0.00014269	498.8319696709098	44.353	1.2417	44.353	43.872	45.114	0					80	35	4	0	0	0	0.40693	1	4222	4222		65.465	3.358	1	4715500			42160	2516	29142	29193	47445	47445					0.1511520299059157
LKVALRSLP	9	Unmodified	_LKVALRSLP_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40;ENST00000566703.1_1_16:30776326-30777900:+|nuORF	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8312072753906	2	498.831852	995.649151	-0.94356	-0.00047068	-0.16957	-8.4588E-05	-1.1131	-0.00055527	498.8317684352171	44.435	1.0845	44.33	44.03	45.115	-0.10468					80	28	4	0	0	0	0.40693	1	4134	4134		65.465	2.1591	1	12242000			42161	2516	29142	29193	47446	47446					0.1511520299059157
LKVALRSLP	9	Unmodified	_LKVALRSLP_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40;ENST00000566703.1_1_16:30776326-30777900:+|nuORF	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.8317565917969	2	498.831852	995.649151	-1.2666	-0.00063182	0.22998	0.00011472	-1.0366	-0.0005171	498.83196788635445	44.558	1.0747	44.347	44.014	45.089	-0.21109					79	28	4	0	0	0	0.34489	1	4167	4167		69.628	2.134	1	12668000			42162	2516	29142	29193	47447	47447					0.1511520299059157
LKVAPPPP	8	Unmodified	_LKVAPPPP_					0	0	0		ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.535400390625	2	409.760364	817.506175	0.44671	0.00018305	-0.12138	-4.9737E-05	0.32533	0.00013331	409.76018182741444	47.526	0.14834	47.256	47.163	47.311	-0.26939					5	3	2	0	0	0	0.027866	1	4639	4639		8.2313	0	1	40905			42163	4894	29143	29194	47448	47448					0.09012195599359529
LKVAWKRR	8	Unmodified	_LKVAWKRR_					0	0	0		ENST00000479915.5_1_7:76129456-76134915:+|nuORF;ENST00000465488.1_1_7:76132718-76134915:+|nuORF;ENST00000468546.5_1_7:76131596-76134915:+|nuORF;nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2	ENST00000479915.5_1_7:76129456-76134915:+|nuORF	ENST00000479915.5_1_7:76129456-76134915:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8478393554688	2	528.843085	1055.67162	5.0242	0.002657	4.1134	0.0021753	9.1377	0.0048324	528.845136468888	17.74	0.21691	17.8	17.686	17.903	0.06036					10	5	2	0	0	0	1.0574	1	167	167		19.36	1.0356	1	21957			42164	15182	29144	29195	47449	47449					0.14600847178871845
LKVDGQLVNL	10	Unmodified	_LKVDGQLVNL_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.8322143554688	2	549.829506	1097.64446	0.3278	0.00018024	3.275	0.0018007	3.6028	0.0019809	549.831298587792	105.26	1.1551	105.09	104.85	106	-0.16485					86	43	6	0	0	0	0.98527	1	13073	13073		47.96	1.5027	1	2138500			42165	2932	29145	29196	47450	47450					0.0995427405719056
LKVDLPVL	8	Unmodified	_LKVDLPVL_					0	0	0			REV__nc|ENSG00000167767|Q6KB66-2|KRT80	REV__nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.7508544921875	2	448.794404	895.574254	-1.0317	-0.00046301	-2.7391	-0.0012293	-3.7707	-0.0016923	448.7930646014255	21.14	0.24777	20.928	20.723	20.971	-0.2128					6	4	2	0	0	0	0.027866	1	587	587		20.482	0	1	9116.1	+	+	42166	19597	29146	29197	47451	47451					0.12229020459369622
LKVKELPL	8	Unmodified	_LKVKELPL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.31561279296875	2	470.315503	938.616454	0.35122	0.00016518	-0.27939	-0.0001314	0.071833	3.3784E-05	470.31523834516287	56.345	1.1351	56.129	55.598	56.733	-0.21607					85	29	4	0	0	0	0.35998	1	6118	6118		102.77	8.7669	1	6063100			42167	6479	29147	29198	47452	47452					0.14468995867753165
LKVKHLVNL	9	Unmodified	_LKVKHLVNL_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;SCN3A|p.A745S|1|0.09|ENSG00000153253|chr2:165138037-165138037|C/A|missense_variant;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	nc|ENSG00000153253|Q9NY46-4|SCN3A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2659912109375	2	532.352951	1062.69135	-0.25832	-0.00013752	0.66476	0.00035389	0.40644	0.00021637	532.3530349372622	33.941	0.2439	33.717	33.6	33.844	-0.22412					7	5	2	0	0	0	0.024541	1	2444	2444		21.96	7.095	1	29919			42168	6337;5026	29148	29199	47453	47453					0.16251178398988486
LKVKKLLL	8	Unmodified	_LKVKKLLL_					0	0	0			REV__ENST00000486291.1_1_2:202262833-202263061:-|nuORF	REV__ENST00000486291.1_1_2:202262833-202263061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7777404785156	2	477.857338	953.700124	-0.074145	-3.5431E-05	2.974	0.0014211	2.8999	0.0013857	477.858756925152	27.235	0.10679	27.222	27.134	27.241	-0.012983					4	2	2	0	0	0	0.027866	1	1453	1453		4.3163	4.3163	1	36271	+		42169	30493	29149	29200	47454	47454					0.22142152035473828
LKVKQGLFE	9	Unmodified	_LKVKQGLFE_					0	0	0			REV__ENSG00000076864|ENST00000374765|RAP1GAP	REV__ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3219604492188	2	531.321317	1060.62808	-1.3639	-0.00072469	0.90487	0.00048078	-0.45908	-0.00024392	531.3218740313993	75.157	1.0121	75.157	74.757	75.769	0					56	26	3	0	0	0	0.67687	1	9230	9230		47.657	1.6851	1	1421800	+		42170	20574	29150	29201	47455	47455					0.10019192891104467
LKVKTEKD	8	Unmodified	_LKVKTEKD_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.8002624511719	2	480.78985	959.565146	0.78865	0.00037917	-0.19178	-9.2206E-05	0.59687	0.00028697	480.7897141880376	22.215	0.55803	22.026	21.769	22.327	-0.18894					27	11	3	0	0	0	0.027866	1	750	750		57.811	0	1	107390	+		42171	36804	29151	29202	47456	47456					0.0837462710304635
LKVLGLPPF	9	Unmodified	_LKVLGLPPF_					0	0	0			REV__ENST00000592391.5_1_19:14520811-14521407:-|nuORF	REV__ENST00000592391.5_1_19:14520811-14521407:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27301025390625	2	492.318046	982.621539	-0.73711	-0.00036289	4.4633	0.0021974	3.7262	0.0018345	492.3203990993085	23.723	0.21327	23.663	23.514	23.727	-0.060862					6	4	2	0	0	0	0.024325	1	937	937		50.025	2.1089	1	15923	+		42172	35631	29152	29203	47457	47457					0.12953299730372692
LKVLIILL	8	Unmodified	_LKVLIILL_					0	0	0			REV__ENST00000392710.8_1_17:66526103-66526435:+|nuORF	REV__ENST00000392710.8_1_17:66526103-66526435:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7720031738281	2	462.846439	923.678326	0.015426	7.1397E-06	-0.80647	-0.00037327	-0.79105	-0.00036613	462.8470292594951	23.11	0.19731	23.186	23.114	23.312	0.076241					6	4	2	0	0	0	0.027866	1	838	838		14.664	0	1	34158	+		42173	31620	29153	29204	47458	47458					0.21343347286892822
LKVLLPEEV	9	Unmodified	_LKVLLPEEV_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2420654296875	2	520.323525	1038.6325	-0.83643	-0.00043521	-0.9831	-0.00051153	-1.8195	-0.00094674	520.3229899723932	85.724	1.7328	85.748	85.575	87.308	0.023666					51	40	2	0	0	0	0.02435	1	10730	10730		60.972	9.6365	1	88843	+		42174	22725	29154	29205	47459	47459					0.11472657313993295
LKVLSGSEV	9	Unmodified	_LKVLSGSEV_					0	0	0		ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	ENSG00000149150|ENST00000278426|SLC43A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7841491699219	2	466.276575	930.538597	-0.15922	-7.4238E-05	-0.4663	-0.00021743	-0.62552	-0.00029167	466.27613466634057	46.797	0.98352	46.797	46.447	47.43	0					39	26	2	0	0	0	0.024523	1	4619	4619		10.265	0	1	569670			42175	6067	29155	29206	47460	47460					0.07054938211717854
LKVLTLMDNPM	11	Unmodified	_LKVLTLMDNPM_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.2164306640625	3	425.566415	1273.67742	-0.2149	-9.1455E-05	0.45671	0.00019436	0.24181	0.00010291	425.5663221370555	26.953	0.25816	26.796	26.586	26.844	-0.15664					9	5	2	0	0	0	0.024746	1	1421	1421		15.921	0	1	34368			42176	9707	29156	29207	47461	47461					0.0515239679334627
LKVLTLMDNPM	11	Unmodified	_LKVLTLMDNPM_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	425.566415	1273.67742	-0.51772	-0.00022032	1.0243	0.0004359	0.50657	0.00021558	425.56693208636455	26.825	0.33491	26.825	26.658	26.993	0	0.073161	0.00013116	NaN	20.315	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96477			42177	9707	29156	29207							0.0515239679334627
LKVLTLMDNPM	11	Unmodified	_LKVLTLMDNPM_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	425.566415	1273.67742	-0.51099	-0.00021746	0.94821	0.00040353	0.43722	0.00018607	425.5667535349603	26.754	0.2896	26.731	26.569	26.859	-0.023088	-0.021369	3.404E-05	NaN	20.315	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109390			42178	9707	29156	29207							0.0515239679334627
LKVNNPISIK	10	Unmodified	_LKVNNPISIK_					0	0	0			REV__ENSG00000118965|ENST00000281405|WDR35	REV__ENSG00000118965|ENST00000281405|WDR35	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3530883789062	2	563.353148	1124.69174	1.246	0.00070197	-0.74497	-0.00041968	0.50108	0.00028228	563.3523933939094	74.151	2.52	74.151	73.871	76.391	0					120	63	3	0	0	0	0.61732	1	9060	9060		75.043	2.1641	1	5884400	+		42179	22433	29157	29208	47462	47462					0.13438553328182934
LKVPLAPP	8	Unmodified	_LKVPLAPP_					0	0	0		ENST00000564774.5_1_16:84212549-84214094:-|nuORF;nc|ENSG00000103168|Q15572-5|TAF1C;ENST00000564208.5_1_16:84212549-84215086:-|nuORF;nc|ENSG00000103168|Q15572|TAF1C;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572-4|TAF1C	ENST00000564774.5_1_16:84212549-84214094:-|nuORF;nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.7327880859375	2	417.776014	833.537475	-0.56432	-0.00023576	0.09975	4.1673E-05	-0.46457	-0.00019409	417.7758738662718	39.259	0.54723	39.036	38.755	39.302	-0.22311					24	14	3	0	0	0	0.027866	1	3328	3328		14.664	0	1	281960			42180	18138;16903	29158	29209	47463	47463					0.11404768633462936
LKVQRHRLY	9	Unmodified	_LKVQRHRLY_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	607.8482055664062	2	606.869831	1211.72511	-0.41518	-0.00025196	-0.18437	-0.00011189	-0.59954	-0.00036384	606.8692114395535	42.419	0.4132	42.287	42.115	42.528	-0.1322					16	11	2	0	0	0	0.024541	1	3874	3874		3.1592	0	1	128120	+		42181	27175	29159	29210	47464	47464					0.12771599890766083
LKVRPVALI	9	Unmodified	_LKVRPVALI_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.2642517089844	2	504.850045	1007.68554	-0.5163	-0.00026065	0.39735	0.0002006	-0.11895	-6.005E-05	504.8502382721422	52.87	0.29853	52.87	52.75	53.049	0					11	7	2	0	0	0	0.024541	1	5687	5687		17.365	0	1	64554			42182	2054	29160	29211	47465	47465					0.18200079887310494
LKVRSHST	8	Unmodified	_LKVRSHST_					0	0	0		ENSG00000144460|ENST00000272907|NYAP2;nc|ENSG00000144460|Q9P242|NYAP2;nc|ENSG00000144460|Q9P242-3|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.29736328125	2	464.272158	926.529764	0.0025641	1.1905E-06	0.85662	0.0003977	0.85918	0.00039889	464.2723007810574	84.473	0.65984	84.473	84.258	84.917	0					21	15	2	0	0	0	0.027866	1	10636	10636		45.952	16.802	1	142230			42183	5742	29161	29212	47466	47466					0.06356009365902082
LKVRSHST	8	Unmodified	_LKVRSHST_					0	0	0		ENSG00000144460|ENST00000272907|NYAP2;nc|ENSG00000144460|Q9P242|NYAP2;nc|ENSG00000144460|Q9P242-3|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.272158	926.529764	0.2328	0.00010808	0.54853	0.00025467	0.78133	0.00036275	464.27222317080134	84.477	0.49944	84.504	84.206	84.705	0.026558	-0.0047414	0.00079981	NaN	45.952	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94310			42184	5742	29161	29212							0.06356009365902082
LKVRSHST	8	Unmodified	_LKVRSHST_					0	0	0		ENSG00000144460|ENST00000272907|NYAP2;nc|ENSG00000144460|Q9P242|NYAP2;nc|ENSG00000144460|Q9P242-3|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.272158	926.529764	0.55125	0.00025593	-0.18439	-8.5607E-05	0.36686	0.00017032	464.271781584614	84.685	0.59203	84.481	84.124	84.716	-0.20329	-0.026834	0.00011926	NaN	45.952	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181160			42185	5742	29161	29212							0.06356009365902082
LKVRSHST	8	Unmodified	_LKVRSHST_					0	0	0		ENSG00000144460|ENST00000272907|NYAP2;nc|ENSG00000144460|Q9P242|NYAP2;nc|ENSG00000144460|Q9P242-3|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.272158	926.529764	0.79299	0.00036816	-1.1884	-0.00055172	-0.39537	-0.00018356	464.271695913856	84.683	0.99711	84.524	84.279	85.276	-0.15868	0.015719	-0.00081297	NaN	45.952	38	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178750			42186	5742	29161	29212							0.06356009365902082
LKVRSHST	8	Unmodified	_LKVRSHST_					0	0	0		ENSG00000144460|ENST00000272907|NYAP2;nc|ENSG00000144460|Q9P242|NYAP2;nc|ENSG00000144460|Q9P242-3|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	ENSG00000144460|ENST00000272907|NYAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.272158	926.529764	0.46067	0.00021388	-0.57604	-0.00026744	-0.11537	-5.3563E-05	464.2717868338487	84.684	0.63676	84.546	84.151	84.788	-0.13789	0.038001	-0.0002444	NaN	45.952	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170470			42187	5742	29161	29212							0.06356009365902082
LKVSATDL	8	Unmodified	_LKVSATDL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5180969238281	2	423.750193	845.485833	-0.37526	-0.00015902	2.7305	0.0011571	2.3553	0.00099805	423.7510699273357	30.877	0.82917	30.699	30.083	30.912	-0.17818					22	19	2	0	0	0	0.027866	1	1998	1998		17.365	0	1	137530			42188	1818;17643	29162	29213	47467	47467					0.056909801489041456
LKVSGAHSIR	10	Unmodified	_LKVSGAHSIR_					0	0	0			REV__ENSG00000167619|ENST00000301204|TMEM145	REV__ENSG00000167619|ENST00000301204|TMEM145	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2466430664062	2	534.31964	1066.62473	-1.3099	-0.00069989	-1.7964	-0.00095983	-3.1062	-0.0016597	534.3193150653512	34.276	0.34557	34.326	34.253	34.599	0.050255					11	8	2	0	0	0	0.03519	1	2519	2519		77.318	5.4401	1	58511	+		42189	26167	29163	29214	47468	47468					0.09407942837083283
LKVSKKGL	8	Unmodified	_LKVSKKGL_					0	0	0		ENST00000600988.1_1_19:36249340-36249487:+|nuORF	ENST00000600988.1_1_19:36249340-36249487:+|nuORF	ENST00000600988.1_1_19:36249340-36249487:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.9338684082031	2	436.80002	871.585488	-0.60578	-0.0002646	1.1632	0.0005081	0.55746	0.0002435	436.80048921938123	21.125	0.49484	20.912	20.574	21.069	-0.2128					14	9	2	0	0	0	0.027866	1	569	569		3.6843	0	1	28592			42190	17506	29164	29215	47469	47469					0.14455842553513776
LKVSKVLQRAT	11	Unmodified	_LKVSKVLQRAT_					0	0	0		CON__ENSEMBL:ENSBTAP00000013050	CON__ENSEMBL:ENSBTAP00000013050	CON__ENSEMBL:ENSBTAP00000013050	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.9011840820312	2	621.898254	1241.78196	0.37707	0.0002345	3.7742	0.0023472	4.1513	0.0025817	621.9004326010249	105.36	0.44228	105.24	105.03	105.48	-0.12444					26	10	3	0	0	0	1.0777	1	13109	13109		17.468	2.6031	1	1613900		+	42191	483	29165	29216	47470	47470					0.17073602656591902
LKVVESLLQ	9	Unmodified	_LKVVESLLQ_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2819213867188	2	514.82115	1027.62775	-0.18009	-9.2713E-05	0.61345	0.00031582	0.43337	0.00022311	515.3234044291858	66.244	0.26852	65.962	65.826	66.095	-0.28148					9	6	2	0	0	0	0.024466	1	7838	7838		39.253	1.4413	1	83215	+		42192	22509	29166	29217	47471	47471					0.11503773171239118
LKVVKGLL	8	Unmodified	_LKVVKGLL_					0	0	0		ENST00000543677.1_1_12:121469378-121476732:-|nuORF	ENST00000543677.1_1_12:121469378-121476732:-|nuORF	ENST00000543677.1_1_12:121469378-121476732:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.26934814453125	2	435.312764	868.610974	-0.10643	-4.6332E-05	0.73048	0.00031799	0.62404	0.00027165	435.31221078960243	23.244	0.15834	23.32	23.234	23.392	0.076239					5	3	2	0	0	0	0.027866	1	845	845		0	0	1	34622			42193	16470	29167	29218	47472	47472					0.17141317075936513
LKVVSLPI	8	Unmodified	_LKVVSLPI_					0	0	0			REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.77191162109375	2	434.796946	867.57934	0.58625	0.0002549	-1.6659	-0.00072431	-1.0796	-0.00046941	434.7967220091058	25.232	0.24276	25.312	25.134	25.377	0.08009					12	5	3	0	0	0	0.027866	1	1109	1109		26.796	0	1	212260	+		42194	25130	29168	29219	47473	47473					0.14025324321983135
LKVWDFYTE	9	Unmodified	_LKVWDFYTE_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.8658142089844	3	400.869368	1199.58628	0.17729	7.1069E-05	-2.5128	-0.0010073	-2.3355	-0.00093623	400.8681091831259	44.187	0.47473	43.942	43.711	44.186	-0.2444					19	12	2	0	0	0	0.0245	1	4098	4098		36.447	1.2685	1	147420			42195	2157	29169	29220	47474	47474					-0.005534075881087119
LKVWTFIS	8	Unmodified	_LKVWTFIS_					0	0	0			REV__ENST00000579991.2_1_17:56164563-56166653:+|nuORF	REV__ENST00000579991.2_1_17:56164563-56166653:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.77410888671875	2	497.292028	992.569503	0.27682	0.00013766	-1.7402	-0.00086537	-1.4633	-0.0007277	497.2909513189537	72.87	0.45544	72.88	72.652	73.107	0.0096512					16	10	2	0	0	0	0.027866	1	8824	8824		31.955	20.444	1	150030	+		42196	35509	29170	29221	47475	47475					0.07292136316596043
LKVYKTLDT	9	Unmodified	_LKVYKTLDT_					0	0	0		ENST00000515140.1_3_4:68340585-68358532:-|nuORF;ENST00000513216.5_3_4:68338325-68358532:-|nuORF;CENPC|p.S868Lfs*5|1|0.3|ENSG00000145241|chr4:67490035-67490035|A/-|frameshift_variant;ENSG00000145241|ENST00000273853|CENPC	ENST00000515140.1_3_4:68340585-68358532:-|nuORF	ENST00000515140.1_3_4:68340585-68358532:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8213500976562	2	540.818607	1079.62266	0.090821	4.9118E-05	3.0857	0.0016688	3.1765	0.0017179	540.8202719051073	105.92	0.60449	105.92	105.69	106.29	0					43	25	2	0	0	0	0.87448	1	13608	13608		34.173	0.65696	1	215800			42197	250	29171	29222	47476	47476					0.08603469308604872
LKVYLEKTV	9	Unmodified	_LKVYLEKTV_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7297973632812	2	546.8368	1091.65905	-0.97847	-0.00053507	0.4867	0.00026615	-0.49177	-0.00026892	546.8371636868283	61.9	0.67566	61.722	61.287	61.963	-0.17782					21	16	2	0	0	0	0.024541	1	6894	6894		10.265	0	1	121800	+		42198	19189	29172	29223	47477	47477					0.11688346205301059
LKVYLLPH	8	Unmodified	_LKVYLLPH_					0	0	0			REV__nc|ENSG00000137409|Q9NZJ7-2|MTCH1	REV__nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7953186035156	2	491.807845	981.601138	0.089983	4.4255E-05	-0.21357	-0.00010503	-0.12359	-6.078E-05	491.80812275396283	24.642	0.18377	24.72	24.639	24.823	0.078344					5	3	2	0	0	0	0.027866	1	1043	1043		21.702	0.7554	1	9641.9	+		42199	23750	29173	29224	47478	47478					0.10960129070554103
LKWAFSMYNLD	11	Unmodified	_LKWAFSMYNLD_					0	0	0		HPCAL1|p.D109N|1|0.2|ENSG00000115756|chr2:10420082-10420082|G/A|missense_variant	HPCAL1|p.D109N|1|0.2|ENSG00000115756|chr2:10420082-10420082|G/A|missense_variant	HPCAL1|p.D109N|1|0.2|ENSG00000115756|chr2:10420082-10420082|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.79034423828125	3	463.228679	1386.66421	-0.73335	-0.00033971	0.53919	0.00024977	-0.19416	-8.9941E-05	463.2289810517547	20.25	1.0193	20.25	19.782	20.801	0					34	20	2	0	0	0	0.024841	1	504	504		10.145	0	1	44570			42200	17745	29174	29225	47479	47479					-0.013657179943493247
LKWAPLDM	8	Unmodified	_LKWAPLDM_					0	0	0			REV__ENST00000578847.5_1_17:73083883-73089702:+|nuORF	REV__ENST00000578847.5_1_17:73083883-73089702:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29205322265625	2	487.262413	972.510274	-0.38878	-0.00018944	0.47533	0.00023161	0.086557	4.2176E-05	487.2619966631121	81.637	0.56246	81.506	81.298	81.86	-0.13075					28	13	3	0	0	0	0.027866	1	10179	10179		19.36	0	1	178040	+		42201	35494	29175	29226	47480	47480					0.022919170307659442
LKWDQPIS	8	Unmodified	_LKWDQPIS_					0	0	0		ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7976379394531	2	493.768917	985.523281	-0.4546	-0.00022447	1.2218	0.00060329	0.76719	0.00037882	493.7692092111299	61.406	0.41171	61.199	60.888	61.3	-0.20669					12	9	2	0	0	0	0.027866	1	6836	6836		30.504	0	1	73123			42202	10345	29176	29227	47481	47481					0.029940714145254788
LKWGICLIYI	10	Unmodified	_LKWGICLIYI_					0	0	0		ENST00000608354.1_1_22:30642479-30642794:+|nuORF	ENST00000608354.1_1_22:30642479-30642794:+|nuORF	ENST00000608354.1_1_22:30642479-30642794:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3501586914062	2	611.356845	1220.69914	-1.2666	-0.00077434	-0.053566	-3.2748E-05	-1.3202	-0.00080709	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.0541	1	11782	11782		38.806	6.0556	1	3820300			42203	17592	29177	29228	47482	47482					0.09761569604256692
LKWGTVSF	8	Unmodified	_LKWGTVSF_					0	0	0			REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.7332763671875	2	469.260728	936.506903	0.065938	3.0942E-05	2.0269	0.00095116	2.0929	0.0009821	469.2638569031243	33.277	0.47834	33.077	32.73	33.209	-0.20019					16	11	2	0	0	0	0.027866	1	2359	2359		19.36	9.0947	1	62812	+		42204	23798	29178	29229	47483	47483					0.03610990248421331
LKWLIAVLA	9	Unmodified	_LKWLIAVLA_					0	0	0			REV__ENSG00000164171|ENST00000296585|ITGA2	REV__ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.8423461914062	2	513.839146	1025.66374	1.7671	0.00090803	3.8514	0.001979	5.6185	0.002887	513.8411597134086	23.493	1.0272	23.302	23.034	24.061	-0.19117					62	23	4	0	0	0	0.80658	1	933	933		38.806	1.647	1	6987900	+		42205	25711	29179	29230	47484	47484					0.15193275138744866
LKWSGWYRY	9	Unmodified	_LKWSGWYRY_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|15|1|sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|15|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2404479980469	3	420.217102	1257.62948	-0.026291	-1.1048E-05	-2.6912	-0.0011309	-2.7174	-0.0011419	420.54971259569953	37.472	0.77388	37.504	37.149	37.923	0.032269					38	20	3	0	0	0	0.024527	1	2968	2968		24.519	0.99649	1	184840	+		42206	36120	29180	29231	47485	47485					0.0109682697984681
LKWSLLLL	8	Unmodified	_LKWSLLLL_					0	0	0		ENSG00000169255|ENST00000320474|B3GALNT1	ENSG00000169255|ENST00000320474|B3GALNT1	ENSG00000169255|ENST00000320474|B3GALNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3056640625	2	493.325871	984.637189	0.87217	0.00043027	1.2273	0.00060546	2.0995	0.0010357	493.3267250615703	84.916	0.28178	84.758	84.698	84.98	-0.15869					11	6	2	0	0	0	0.027866	1	10305	10305		51.335	0	1	57755			42207	7919	29181	29232	47486	47486					0.14425586247421052
LKWSLVASA	9	Unmodified	_LKWSLVASA_					0	0	0			REV__ENSG00000188725|ENST00000339020|SMIM15	REV__ENSG00000188725|ENST00000339020|SMIM15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7914123535156	2	487.78711	973.559667	-0.33809	-0.00016492	3.4071	0.0016619	3.069	0.001497	487.7909205774562	96.283	1.1017	96.283	95.735	96.836	0					75	25	5	0	0	0	0.96906	1	12252	12252		26.693	1.2427	1	1162000	+		42208	28056	29182	29233	47487	47487					0.07182948311219661
LKWSVFLSVG	10	Unmodified	_LKWSVFLSVG_					0	0	0			REV__ENSG00000170743|ENST00000318881|SYT9	REV__ENSG00000170743|ENST00000318881|SYT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2679443359375	2	568.329142	1134.64373	-0.1218	-6.9224E-05	-1.8537	-0.0010535	-1.9755	-0.0011228	568.3282270910897	24.492	0.71964	24.277	24.089	24.809	-0.2151					20	16	2	0	0	0	0.03519	1	1074	1074		37.812	0	1	99766	+		42209	26499	29183	29234	47488	47488					0.08179479408113366
LKWTSSIAQL	10	Unmodified	_LKWTSSIAQL_					0	0	0		nc|ENSG00000165801|Q8TER5-3|ARHGEF40;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000554514.1_1_14:21549058-21555515:+|nuORF;ENST00000555232.5_1_14:21549679-21554039:+|nuORF;nc|ENSG00000165801|Q8TER5-2|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.704345703125	2	573.829506	1145.64446	0.053518	3.071E-05	-0.50551	-0.00029007	-0.45199	-0.00025936	573.8291143499349	63.324	0.50703	63.103	62.94	63.447	-0.22097					26	12	3	0	0	0	0.03519	1	7133	7133		36.447	13.867	1	380910			42210	18469	29184	29235	47489	47489					0.07746274057171831
LKWVEPAV	8	Unmodified	_LKWVEPAV_					0	0	0			REV__nc|ENSG00000089177|Q96L93-2|KIF16B	REV__nc|ENSG00000089177|Q96L93-2|KIF16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2561340332031	2	471.276378	940.538203	0.16654	7.8485E-05	1.6794	0.00079148	1.846	0.00086997	471.27623452154785	44.537	0.74471	44.574	44.072	44.817	0.036903					29	21	2	0	0	0	0.027866	1	4226	4226		25.45	0	1	269400	+		42211	36498	29185	29236	47490	47490					0.06555563282506682
LKYAKSKEV	9	Unmodified	_LKYAKSKEV_					0	0	0			REV__ENSG00000196116|ENST00000355295|TDRD7	REV__ENSG00000196116|ENST00000355295|TDRD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7840576171875	2	533.318774	1064.623	-0.57622	-0.00030731	-1.7407	-0.00092835	-2.3169	-0.0012357	533.3186236126131	45.214	0.50815	45.257	45.038	45.546	0.043877					31	14	3	0	0	0	0.023239	1	4366	4366		64.207	0	1	1210300	+		42212	28127	29186	29237	47491	47491					0.09326889028466212
LKYEMQLL	8	Unmodified	_LKYEMQLL_					0	0	0		ENSG00000078124|ENST00000532485|ACER3;ENST00000527508.1_1_11:76637608-76709863:+|nuORF;ENST00000530334.5_1_11:76579304-76726162:+|nuORF	ENSG00000078124|ENST00000532485|ACER3	ENSG00000078124|ENST00000532485|ACER3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.7756958007812	2	519.288628	1036.5627	-0.027265	-1.4159E-05	-2.4627	-0.0012788	-2.4899	-0.001293	519.2870833660475	75.741	0.277	75.482	75.319	75.596	-0.25866					9	6	2	0	0	0	0.027866	1	8983	8983		19.36	0	1	56495			42213	1629	29187	29238	47492	47492					0.045884553737323586
LKYITHDKK	9	Unmodified	_LKYITHDKK_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8;nc|ENSG00000101353|Q9H579|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.3391723632812	2	573.337498	1144.66044	0.078313	4.49E-05	4.1243	0.0023646	4.2026	0.0024095	573.3400338240002	91.946	1.0947	91.805	91.442	92.537	-0.1413					65	25	4	0	0	0	0.87448	1	11284	11284		34.173	0.65696	1	529060			42214	2315	29188	29239	47493	47493					0.0938998029407685
LKYKYLVFG	9	Unmodified	_LKYKYLVFG_					0	0	0			REV__ENSG00000189221|ENST00000338702|MAOA	REV__ENSG00000189221|ENST00000338702|MAOA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7815551757812	2	565.83406	1129.65357	-0.8425	-0.00047671	-2.1956	-0.0012424	-3.0381	-0.0017191	565.8329224530155	78.647	0.83264	78.663	78.397	79.23	0.015907					25	19	2	0	0	0	0.024487	1	9635	9635		40.573	17.53	1	220980	+		42215	28109	29189	29240	47494	47494					0.09392667413499112
LKYLFGVKTKR	11	Unmodified	_LKYLFGVKTKR_					0	0	0		nc|ENSG00000170615|P58743-4|SLC26A5;nc|ENSG00000170615|P58743-3|SLC26A5;nc|ENSG00000170615|P58743-2|SLC26A5;nc|ENSG00000170615|P58743-5|SLC26A5;nc|ENSG00000170615|P58743-6|SLC26A5;ENSG00000170615|ENST00000306312|SLC26A5	nc|ENSG00000170615|P58743-4|SLC26A5	nc|ENSG00000170615|P58743-4|SLC26A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.61981201171875	3	451.618607	1351.83399	-0.13411	-6.0567E-05	3.2745	0.0014788	3.1404	0.0014183	451.6200575280716	17.8	1.0433	17.593	17.364	18.408	-0.20669					32	20	3	0	0	0	1.0764	1	223	223		17.833	3.1395	1	58723			42216	8061	29190	29241	47495	47495					0.17214766070333098
LKYMLCLYL	9	Unmodified	_LKYMLCLYL_					0	0	0		ENST00000263461.10_1_10:122668592-122668682:+|nuORF	ENST00000263461.10_1_10:122668592-122668682:+|nuORF	ENST00000263461.10_1_10:122668592-122668682:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	579.8128051757812	2	580.316331	1158.61811	-1.1012	-0.00063903	-0.62134	-0.00036057	-1.7225	-0.0009996	580.3161061085567	97.972	0.90472	97.972	97.37	98.275	0					26	20	2	0	0	0	0.024436	1	12516	12516		38.806	3.1879	1	91677			42217	11535	29191	29242	47496	47496					0.0451454556985027
LKYRSPVPL	9	Unmodified	_LKYRSPVPL_					0	0	0		ENST00000533807.3_1_19:18304624-18306862:+|nuORF;nc|ENSG00000254858|Q567V2-2|MPV17L2;ENSG00000254858|ENST00000599612|MPV17L2	ENST00000533807.3_1_19:18304624-18306862:+|nuORF	ENST00000533807.3_1_19:18304624-18306862:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.784912109375	2	536.829309	1071.64407	-0.64127	-0.00034425	-0.74527	-0.00040008	-1.3865	-0.00074434	536.8288535958833	52.852	0.37437	52.947	52.752	53.126	0.094315					15	9	2	0	0	0	0.024457	1	5600	5600		29.15	0	1	133910			42218	10886	29192	29243	47497	47497					0.11110899127993434
LKYVGSLK	8	Unmodified	_LKYVGSLK_					0	0	0			REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF	REV__ENST00000492535.1_1_22:32875160-32883832:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.26593017578125	2	454.284203	906.553853	-0.20863	-9.4777E-05	4.1757	0.001897	3.9671	0.0018022	454.28665438222225	63.307	0.31648	63.123	62.955	63.272	-0.18386					10	7	2	0	0	0	0.027866	1	7138	7138		68.787	28.214	1	57931	+		42219	21069	29193	29244	47498	47498					0.09683849799569089
LKYWGTVA	8	Unmodified	_LKYWGTVA_					0	0	0			REV__ENSG00000117016|ENST00000372684|RIMS3	REV__ENSG00000117016|ENST00000372684|RIMS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2952880859375	2	469.260728	936.506903	1.9606	0.00092005	0.36982	0.00017354	2.3305	0.0010936	469.2617713234709	63.301	0.21587	63.355	63.267	63.483	0.054104					6	5	2	0	0	0	0.027866	1	7307	7307		65.803	15.779	1	76006	+		42220	22320	29194	29245	47499	47499					0.03610990248421331
LKYWKYWHSRQ	11	Unmodified	_LKYWKYWHSRQ_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;nc|ENSG00000083307|Q6ISB3-2|GRHL2;C12orf52-GRHL2|1|fusion	ENSG00000083307|ENST00000646743|GRHL2	ENSG00000083307|ENST00000646743|GRHL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7840576171875	3	532.280765	1593.82047	-0.46552	-0.00024779	2.2874	0.0012176	1.8219	0.00096977	532.2824773593028	45.63	0.54838	45.674	45.344	45.892	0.043877					18	15	2	0	0	0	0.024816	1	4366	4366		11.932	0	1	465460			42221	1750	29195	29246	47500	47500					0.04730908291094238
LKYYKLIL	8	Unmodified	_LKYYKLIL_					0	0	0		ENST00000498732.5_1_X:139854537-139854750:+|nuORF	ENST00000498732.5_1_X:139854537-139854750:+|nuORF	ENST00000498732.5_1_X:139854537-139854750:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7384643554688	2	527.338978	1052.6634	-0.053834	-2.8389E-05	-0.48718	-0.00025691	-0.54101	-0.0002853	527.3386189675955	53.281	0.26628	53.154	52.951	53.217	-0.12705					10	6	2	0	0	0	0.027866	1	5548	5548		8.2313	1.9186	1	59595			42222	15633	29196	29247	47501	47501					0.13917855418890213
LLAAAALLAQ	10	Unmodified	_LLAAAALLAQ_					0	0	0		ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7898864746094	2	477.80276	953.590967	-0.2183	-0.0001043	0.34412	0.00016442	0.12583	6.012E-05	477.8026928349925	53.244	0.51879	53.097	52.72	53.239	-0.14724					23	13	2	0	0	0	0.03519	1	5745	5745		21.96	0	1	309070			42223	9059	29197	29248	47502	47502					0.11231521345314377
LLAAARNP	8	Unmodified	_LLAAARNP_					0	0	0		VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant;ENSG00000168140|ENST00000304735|VASN	VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.7428283691406	2	413.250695	824.486836	0.446	0.00018431	1.2559	0.000519	1.7019	0.00070331	413.2513398957514	37.273	0.36293	37.209	37.052	37.415	-0.063385					14	9	2	0	0	0	0.027866	1	3005	3005		28.254	9.9299	1	46875			42224	7788	29198	29249	47503	47503					0.06757239308467433
LLAAASSPALP	11	Unmodified	_LLAAASSPALP_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7978515625	2	505.797675	1009.5808	-0.89988	-0.00045516	1.6594	0.00083933	0.75954	0.00038417	505.7983780077611	80.737	0.92451	80.761	80.445	81.37	0.023911					49	22	3	0	0	0	0.782	1	9967	9967		58.782	5.4305	1	1326500			42225	3051	29199	29250	47504	47504					0.07638913620087351
LLAAGCALVL	10	Unmodified	_LLAAGCALVL_					0	0	0		ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2877502441406	2	472.285889	942.557224	-0.48925	-0.00023107	4.0657	0.0019202	3.5765	0.0016891	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.1309	1	11733	11733		26.796	1.3459	1	45907000			42226	4284	29200	29251	47505	47505					0.08364776581913702
LLAAGRGPAN	10	Unmodified	_LLAAGRGPAN_					0	0	0			REV__ENST00000460508.3_1_2:74730137-74730440:-|nuORF	REV__ENST00000460508.3_1_2:74730137-74730440:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.27252197265625	2	470.272158	938.529764	0.12142	5.7102E-05	-0.22663	-0.00010658	-0.10521	-4.9476E-05	470.27204080654536	88.706	1.0467	88.575	88.277	89.324	-0.13135					54	24	3	0	0	0	1.0781	1	10842	10842		35.618	5.1146	1	328100	+		42227	32850	29201	29252	47506	47506					0.058040093658974
LLAALAHLAAA	11	Unmodified	_LLAALAHLAAA_					0	0	0		ENSG00000174206|ENST00000398055|KICS2;ENST00000540673.1_1_12:64615457-64616017:-|nuORF	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7996215820312	2	517.821484	1033.62842	-0.16999	-8.8023E-05	1.5197	0.00078691	1.3497	0.00069889	517.8227228827132	104.69	0.33693	104.69	104.53	104.87	0					12	9	2	0	0	0	0.024733	1	13447	13447		17.365	0	1	60566			42228	8450	29202	29253	47507	47507					0.1129461261095912
LLAALALMKN	10	Unmodified	_LLAALALMKN_					0	0	0			REV__CON__P13717	REV__CON__P13717	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.7669067382812	2	529.325545	1056.63654	0.18179	9.6223E-05	-3.6926	-0.0019546	-3.5108	-0.0018584	529.3234344750526	67.618	0.77363	67.642	67.389	68.163	0.023903					34	19	3	0	0	0	0.03519	1	8031	8031		44.117	0	1	1947000	+	+	42229	19551	29203	29254	47508	47508					0.11048423536090013
LLAALLASTL	10	Unmodified	_LLAALLASTL_					0	0	0		ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3056335449219	2	493.318243	984.621933	0.49769	0.00024552	3.5851	0.0017686	4.0828	0.0020141	493.3198760436739	69.532	0.53429	69.239	68.933	69.467	-0.29292					26	13	3	0	0	0	0.03519	1	8309	8309		15.642	0	1	788480			42230	5615	29204	29255	47509	47509					0.12900674659567812
LLAAPGNNVL	10	Unmodified	_LLAAPGNNVL_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.2281494140625	2	491.290017	980.565481	-0.73713	-0.00036215	0.73804	0.00036259	0.00090128	4.4279E-07	491.29027493094577	61.851	1.044	61.673	61.37	62.414	-0.17781					53	26	4	0	0	0	0.03519	1	6979	6979		42.396	0	1	3176800	+		42231	23135	29205	29256	47510	47510					0.07442046822893644
LLAAQKVI	8	Unmodified	_LLAAQKVI_					0	0	0		nc|ENSG00000082212|P23368-2|ME2;ENSG00000082212|ENST00000321341|ME2	nc|ENSG00000082212|P23368-2|ME2	nc|ENSG00000082212|P23368-2|ME2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2872009277344	2	428.286746	854.558939	1.224	0.00052422	-1.072	-0.00045914	0.15193	6.5072E-05	428.2861494408152	62.994	1.0832	63.048	62.719	63.803	0.054104					71	28	4	0	0	0	0.85409	1	7256	7256		54.765	0	1	5319800			42232	1727	29206	29257	47511	47511					0.12584153662180597
LLAARASLDL	10	Unmodified	_LLAARASLDL_					0	0	0		ENSG00000179598|ENST00000321560|PLD6	ENSG00000179598|ENST00000321560|PLD6	ENSG00000179598|ENST00000321560|PLD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7966918945312	2	521.816399	1041.61824	0.14447	7.5385E-05	-1.1556	-0.00060301	-1.0111	-0.00052762	521.8153592701414	69.146	0.5723	68.854	68.556	69.129	-0.29275					25	14	2	0	0	0	0.03519	1	8277	8277		36.447	3.6343	1	296680			42233	8908	29207	29258	47512	47512					0.09910004885705348
LLAARQPI	8	Unmodified	_LLAARQPI_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.24517822265625	2	441.281995	880.549437	-0.25626	-0.00011308	0.59016	0.00026043	0.3339	0.00014734	441.2820096547526	32.279	0.61061	32.291	31.984	32.594	0.011795					35	15	4	0	0	0	0.027866	1	2243	2243		42.474	19.432	1	333240	+		42234	20777	29208	29259	47513	47513					0.10438385376664883
LLAARQPI	8	Unmodified	_LLAARQPI_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	441.281995	880.549437	-0.32672	-0.00014417	0.77766	0.00034317	0.45094	0.00019899	441.28205740524106	32.361	0.61236	32.361	32.03	32.642	0	0.097853	0.00020042	NaN	40.573	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393160	+		42235	20777	29208	29259							0.10438385376664883
LLAATKRW	8	Unmodified	_LLAATKRW_					0	0	0			REV__ENST00000445329.5_1_11:5618049-5624898:+|nuORF	REV__ENST00000445329.5_1_11:5618049-5624898:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7500915527344	2	479.795269	957.575986	-0.67323	-0.00032301	-3.1602	-0.0015162	-3.8334	-0.0018392	479.7936528686807	30.413	0.3343	30.413	30.216	30.55	0					12	7	2	0	0	0	0.027866	1	1955	1955		29.842	0	1	57283	+		42236	32608	29209	29260	47514	47514					0.0955007426798602
LLAAWHVKV	9	Unmodified	_LLAAWHVKV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.79248046875	2	518.818744	1035.62294	0.57508	0.00029836	-2.4992	-0.0012966	-1.9241	-0.00099826	518.8168872834527	55.445	0.10994	55.445	55.39	55.5	0					4	2	2	0	0	0	0.024535	1	6129	6129		18.324	11.131	1	55317			42237	8851	29210	29261	47515	47515					0.10654933819137113
LLAAWHVKV	9	Unmodified	_LLAAWHVKV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.818744	1035.62294	-0.9448	-0.00049018	4.4621	0.002315	3.5173	0.0018248	518.8207596047542	55.312	0.89879	55.166	54.647	55.546	-0.14609	-0.087562	0.00090881	NaN	25.45	68	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735870			42238	8851	29210	29261							0.10654933819137113
LLAAWHVKV	9	Unmodified	_LLAAWHVKV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.818744	1035.62294	0.026744	1.3875E-05	3.3246	0.0017249	3.3514	0.0017388	518.8202034987871	55.449	0.87344	55.218	54.674	55.547	-0.23087	-0.035008	-0.00027146	NaN	25.45	61	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636270			42239	8851	29210	29261							0.10654933819137113
LLAAWHVKV	9	Unmodified	_LLAAWHVKV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.818744	1035.62294	-0.18206	-9.4455E-05	3.4925	0.001812	3.3104	0.0017175	518.8204046404499	55.4	0.8525	55.184	54.676	55.528	-0.21551	-0.068898	-9.7301E-05	NaN	25.45	61	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	670930			42240	8851	29210	29261							0.10654933819137113
LLAAWTARA	9	Unmodified	_LLAAWTARA_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.21136474609375	2	486.784902	971.55525	0.9607	0.00046766	-0.13907	-6.7698E-05	0.82163	0.00039996	486.78487335023823	54.889	0.43529	54.683	54.431	54.866	-0.20613					26	11	3	0	0	0	0.024025	1	5850	5850		71.877	16.983	1	566470			42241	5545	29211	29262	47516	47516					0.0683348388831746
LLACFTTPAE	10	Unmodified	_LLACFTTPAE_					0	0	0			REV__ENSG00000129946|ENST00000264554|SHC2	REV__ENSG00000129946|ENST00000264554|SHC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2554321289062	2	533.267893	1064.52123	-0.90384	-0.00048199	1.5507	0.00082695	0.64687	0.00034496	533.7704376462219	52.94	0.22191	52.94	52.827	53.049	0					7	5	2	0	0	0	0.03519	1	5692	5692		37.159	1.5408	1	53001	+		42242	23068	29212	29263	47517	47517					-0.00844725385604761
LLADASAFSGE	11	Unmodified	_LLADASAFSGE_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.76416015625	2	540.764029	1079.5135	-0.2368	-0.00012805	0.8826	0.00047728	0.6458	0.00034922	540.7643940942081	50.096	1.755	49.816	49.397	51.152	-0.27977					119	46	4	0	0	0	0.61689	1	5085	5085		68.787	2.9837	1	11668000	+		42243	23829	29213	29264	47518	47518					-0.02307161381509104
LLADASAFSGE	11	Unmodified	_LLADASAFSGE_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7640380859375	2	540.764029	1079.5135	-0.47149	-0.00025496	1.2262	0.00066307	0.75469	0.00040811	540.7645879283925	49.966	1.8384	49.785	49.383	51.222	-0.18071					122	48	4	0	0	0	0.69247	1	5086	5086		64.207	16.292	1	11458000	+		42244	23829	29213	29264	47519	47519					-0.02307161381509104
LLADIEEETY	10	Unmodified	_LLADIEEETY_					0	0	0			REV__nc|ENSG00000116497|Q96BU1-2|S100PBP	REV__nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.85693359375	2	598.290076	1194.5656	-0.33485	-0.00020033	-4.1039	-0.0024553	-4.4388	-0.0026557	598.2874544478589	94.128	0.80232	93.98	93.651	94.454	-0.14771					46	18	4	0	0	0	0.03519	1	11590	11590		45.952	21.433	1	233980	+		42245	22279	29214	29265	47520	47520					-0.023900427584067074
LLAEELNKL	9	Unmodified	_LLAEELNKL_					0	0	0		ENSG00000179988|ENST00000406217|PSTK;ENST00000465232.5_1_10:124742932-124749886:+|nuORF	ENSG00000179988|ENST00000406217|PSTK	ENSG00000179988|ENST00000406217|PSTK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8101196289062	2	521.810782	1041.60701	-0.48975	-0.00025556	-1.1378	-0.0005937	-1.6275	-0.00084926	521.8103418711199	53.626	1.0494	53.721	53.407	54.456	0.095669					79	29	5	0	0	0	0.077175	1	5760	5760		118.74	3.249	1	13378000			42246	8952	29215	29266	47521	47521					0.08787182791570558
LLAEIRTRA	9	Unmodified	_LLAEIRTRA_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.809814453125	2	521.822015	1041.62948	-0.69586	-0.00036311	3.157	0.0016474	2.4611	0.0012843	521.824354774481	53.6	0.36201	53.696	53.444	53.806	0.095669					15	9	2	0	0	0	0.022083	1	5734	5734		99.375	9.0051	1	260440			42247	8336	29216	29267	47522	47522					0.11032826979840138
LLAEKVEQL	9	Unmodified	_LLAEKVEQL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.81005859375	2	521.810782	1041.60701	-0.44903	-0.00023431	-1.0014	-0.00052255	-1.4505	-0.00075686	521.8103545221695	53.784	1.0834	53.784	53.474	54.558	0					87	30	5	0	0	0	0.013946	3	5853	5841;5853;5864		181.41	18.256	1	12082000			42248	2590	29217	29268	47523;47524;47525	47524					0.0878718279154782
LLAEKVEQL	9	Unmodified	_LLAEKVEQL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OPSCC_39_ClassI_Rep-2	2	521.8102416992188	2	521.810782	1041.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.894	1	53.747	53.247	54.247	-0.14723								0	0	0	0.014435	1	5829	5829		143.37	10.616	1				42249	2590	29217	29268	47526	47526					0.0878718279154782
LLAEKVEQL	9	Unmodified	_LLAEKVEQL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OPSCC_39_ClassI_Rep-2	2	521.810302734375	2	521.810782	1041.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.967	1	53.82	53.32	54.32	-0.14723								0	0	0	0.023134	1	5841	5841		126.24	7.4995	1				42250	2590	29217	29268	47527	47527					0.0878718279154782
LLAEKVEQL	9	Unmodified	_LLAEKVEQL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8101196289062	2	521.810782	1041.60701	-0.48975	-0.00025556	-1.1378	-0.0005937	-1.6275	-0.00084926	521.8103418711199	53.626	1.0494	53.721	53.407	54.456	0.095669					79	29	5	0	0	0	0.013719	2	5746	5725;5746		168.26	10.184	1	13378000			42251	2590	29217	29268	47528;47529	47529					0.0878718279154782
LLAELGQHS	9	Unmodified	_LLAELGQHS_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2824401855469	2	484.263999	966.513445	0.093692	4.5371E-05	1.0027	0.00048559	1.0964	0.00053097	484.2643165023903	42.117	0.45041	41.887	41.651	42.101	-0.23029					13	12	2	0	0	0	0.024427	1	3739	3739		34.173	8.7224	1	83406	+		42252	22383	29218	29269	47530	47530					0.02884883409149097
LLAELPTFCV	10	Unmodified	_LLAELPTFCV_					0	0	0			REV__ENSG00000158715|ENST00000367145|SLC45A3	REV__ENSG00000158715|ENST00000367145|SLC45A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.332275390625	2	553.301736	1104.58892	0.51426	0.00028454	-3.6193	-0.0020025	-3.105	-0.001718	553.2994596773393	95.379	0.52084	95.256	94.77	95.291	-0.12251					19	11	2	0	0	0	0.03519	1	11767	11767		20.947	6.0821	1	70800	+		42253	25215	29219	29270	47531	47531					0.04080724545178782
LLAELRVSK	9	Unmodified	_LLAELRVSK_					0	0	0			REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8042602539062	2	514.826766	1027.63898	-0.091328	-4.7018E-05	0.23348	0.0001202	0.14215	7.3182E-05	514.8266976780459	58.403	0.42381	58.225	58.017	58.441	-0.17775					15	9	2	0	0	0	0.024409	1	6417	6417		33.922	13.925	1	410660	+		42254	24571	29220	29271	47532	47532					0.12626595265373908
LLAELRVSK	9	Unmodified	_LLAELRVSK_					0	0	0			REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.826766	1027.63898	0.034855	1.7944E-05	0.072799	3.7479E-05	0.10765	5.5423E-05	514.8266387807297	58.358	0.40062	58.168	58.056	58.457	-0.19017	-0.046392	0.00016693	NaN	27.047	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296930	+		42255	24571	29220	29271							0.12626595265373908
LLAELRVSK	9	Unmodified	_LLAELRVSK_					0	0	0			REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.826766	1027.63898	0.57424	0.00029563	-0.75462	-0.0003885	-0.18038	-9.2865E-05	514.8264028711828	58.491	0.50045	58.25	58.001	58.502	-0.24165	0.035212	-0.00068503	NaN	27.047	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303600	+		42256	24571	29220	29271							0.12626595265373908
LLAERYVI	8	Unmodified	_LLAERYVI_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7950134277344	2	488.794935	975.575317	0.45436	0.00022209	-0.60108	-0.0002938	-0.14672	-7.1716E-05	488.7944965426369	72.887	1.2344	72.606	72.139	73.374	-0.28124					64	30	3	0	0	0	0.91239	1	8841	8841		50.025	0	1	2674300			42257	6938	29221	29272	47533	47533					0.08655234828268021
LLAESLFQL	9	Unmodified	_LLAESLFQL_					0	0	0		ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.3187866210938	2	517.30005	1032.58555	-0.4636	-0.00023982	-0.81837	-0.00042334	-1.282	-0.00066316	517.3002379090981	77.129	0.42609	77.143	77.021	77.447	0.013504					14	9	2	0	0	0	0.023817	1	9450	9450		60.972	0	1	193890			42258	5234	29222	29273	47534	47534					0.07055797762859584
LLAESSCSTL	10	Unmodified	_LLAESSCSTL_					0	0	0			REV__nc|ENSG00000173193|Q460N5-1|PARP14	REV__nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2537841796875	2	512.254982	1022.49541	-0.65531	-0.00033569	-3.3861	-0.0017345	-4.0414	-0.0020702	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.941	1	5782	5782		51.335	8.861	1	53582000	+		42259	26750	29223	29274	47535	47535					-0.014936196278654279
LLAETHYQL	9	Unmodified	_LLAETHYQL_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7946166992188	2	544.292756	1086.57096	-0.79502	-0.00043272	2.5286	0.0013763	1.7336	0.00094357	544.7956890737445	55.244	0.88165	55.094	54.641	55.523	-0.15036					59	24	4	0	0	0	0.12602	2	6064	6064;6073		104.75	14.377	1	6459400			42260	4651;16166	29224	29275	47536;47537	47536					0.031137256147076187
LLAETLLVV	9	Unmodified	_LLAETLLVV_					0	0	0			REV__ENSG00000198445|ENST00000359963|CCT8L2;REV__nc|ENSG00000020219|A6NM43|CCT8L1P	REV__ENSG00000198445|ENST00000359963|CCT8L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.81268310546875	2	485.812793	969.611034	-0.0016193	-7.8669E-07	-0.40187	-0.00019523	-0.40349	-0.00019602	485.8126380555575	89.123	2.245	89.123	88.725	90.97	0					101	53	5	0	0	0	0.15889	1	11218	11218		97.473	5.2821	1	9462000	+		42261	28423;36440	29225	29276	47538	47538					0.12501272285282994
LLAETLLVV	9	Unmodified	_LLAETLLVV_					0	0	0			REV__ENSG00000198445|ENST00000359963|CCT8L2;REV__nc|ENSG00000020219|A6NM43|CCT8L1P	REV__ENSG00000198445|ENST00000359963|CCT8L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.81231689453125	2	485.812793	969.611034	0.40498	0.00019674	-0.6947	-0.00033749	-0.28972	-0.00014075	485.8123485160711	89.125	2.098	88.987	88.607	90.705	-0.13762					128	49	4	0	0	0	0.4855	1	10893	10893		60.294	0	1	3117100	+		42262	28423;36440	29225	29276	47539	47539					0.12501272285282994
LLAFDFHW	8	Unmodified	_LLAFDFHW_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276;nc|ENSG00000291317|P0DTL6-1|ZFTRAF1	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.302490234375	2	524.766178	1047.5178	-0.30353	-0.00015928	-2.3935	-0.001256	-2.697	-0.0014153	524.7673423382951	65.787	0.13815	65.515	65.43	65.568	-0.27283					5	3	2	0	0	0	0.027866	1	7766	7766		29.842	14.2	1	46367			42263	18840	29226	29277	47540	47540					-0.004056073772972013
LLAFILALS	9	Unmodified	_LLAFILALS_					0	0	0		ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.7327575683594	2	480.810054	959.605554	-0.43716	-0.00021019	-2.4577	-0.0011817	-2.8949	-0.0013919	480.808705211949	57.306	0.37832	57.402	57.051	57.429	0.09531					11	9	2	0	0	0	0.024386	1	6310	6310		33.516	0	1	106990			42264	8129	29227	29278	47541	47541					0.12413593493465669
LLAFLELSD	9	Unmodified	_LLAFLELSD_					0	0	0			REV__ENST00000303391.10_2_X:153294741-153294930:-|nuORF	REV__ENST00000303391.10_2_X:153294741-153294930:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.8440856933594	2	510.784233	1019.55391	-0.0049447	-2.5257E-06	2.9274	0.0014952	2.9224	0.0014927	510.78623664961316	76.056	0.23116	75.887	75.741	75.972	-0.16854					8	5	2	0	0	0	0.024354	1	9021	9021		30.504	0	1	50717	+		42265	30093	29228	29279	47542	47542					0.04491805008899519
LLAFPFQSV	9	Unmodified	_LLAFPFQSV_					0	0	0			REV__ENST00000435068.5_1_7:44112663-44113867:-|nuORF	REV__ENST00000435068.5_1_7:44112663-44113867:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.31475830078125	2	511.289485	1020.56442	-1.0579	-0.00054088	-2.4479	-0.0012516	-3.5058	-0.0017925	511.28799865413595	51.63	0.38762	51.357	51.12	51.507	-0.27266					15	9	2	0	0	0	0.023837	1	5287	5287		45.972	0	1	167170	+		42266	22658	29229	29280	47543	47543					0.054958324539938985
LLAFPLLLL	9	Unmodified	_LLAFPLLLL_					0	0	0		ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF	ENSG00000165282|ENST00000378617|PIGO	ENSG00000165282|ENST00000378617|PIGO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.8233337402344	2	506.843897	1011.67324	-0.28166	-0.00014276	-3.8252	-0.0019388	-4.1069	-0.0020816	506.84173707470507	60.526	0.45182	60.32	60.091	60.543	-0.20599					24	10	3	0	0	0	0.023092	1	6722	6722		72.62	0	1	276030			42267	7392	29230	29281	47544	47544					0.16787043424290005
LLAGIHDD	8	Unmodified	_LLAGIHDD_					0	0	0			REV__ENSG00000180104|ENST00000512944|EXOC3	REV__ENSG00000180104|ENST00000512944|EXOC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.27130126953125	2	427.224342	852.434132	-1.0673	-0.00045596	2.2705	0.00097002	1.2033	0.00051406	427.22520923924964	39.665	0.53687	39.553	39.255	39.792	-0.11223					23	14	2	0	0	0	0.027866	1	3413	3413		21.702	7.0382	1	132480	+		42268	27315	29231	29282	47545	47545					0.0020123645499552367
LLAGIIAPG	9	Unmodified	_LLAGIIAPG_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.7428283691406	2	412.765646	823.516739	0.39046	0.00016117	3.175	0.0013105	3.5654	0.0014717	412.7667742612386	37.227	0.76165	37.164	36.828	37.589	-0.063385					32	20	2	0	0	0	0.024475	1	3005	3005		29.842	16.066	1	63201	+		42269	25347	29232	29283	47546	47546					0.0979217825380374
LLAGIVPVS	9	Unmodified	_LLAGIVPVS_					0	0	0			REV__ENST00000566581.5_1_15:34656349-34659376:-|nuORF	REV__ENST00000566581.5_1_15:34656349-34659376:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.77984619140625	2	434.778754	867.542954	0.45067	0.00019594	2.8989	0.0012604	3.3496	0.0014563	434.7798992749092	40.428	1.9181	40.428	39.696	41.615	0					185	53	4	0	0	0	0.85941	1	3500	3500		35.201	1.6851	1	6987300	+		42270	27024	29233	29284	47547	47547					0.10388447425282266
LLAGKAAVL	9	Unmodified	_LLAGKAAVL_					0	0	0		nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1	nc|ENSG00000164403|Q2M3G4-2|SHROOM1	nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2867126464844	2	428.286746	854.558939	-0.77509	-0.00033196	0.87774	0.00037593	0.10265	4.3965E-05	428.286988656732	63.009	1.0071	63.009	62.729	63.736	0					65	26	4	0	0	0	0.52323	1	7365	7365		57.811	10.154	1	5906900			42271	7275	29234	29285	47548	47548					0.12584153662180597
LLAGKAAVL	9	Unmodified	_LLAGKAAVL_					0	0	0		nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1	nc|ENSG00000164403|Q2M3G4-2|SHROOM1	nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	428.286746	854.558939	-0.15282	-6.5452E-05	0.29494	0.00012632	0.14212	6.0868E-05	428.28673327833013	63.282	1.0828	63.031	62.683	63.765	-0.25141	0.0014026	0.00024858	NaN	57.811	68	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6288900			42272	7275	29234	29285							0.12584153662180597
LLAGKAQGQW	10	Unmodified	_LLAGKAQGQW_					0	0	0		ENST00000315249.11_1_17:33338774-33338990:-|nuORF	ENST00000315249.11_1_17:33338774-33338990:-|nuORF	ENST00000315249.11_1_17:33338774-33338990:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2727661132812	2	536.300916	1070.58728	-1.0946	-0.00058702	-1.1399	-0.00061136	-2.2345	-0.0011984	536.3003850167054	36.523	0.46486	36.561	36.338	36.803	0.038044					23	12	2	0	0	0	0.03519	1	2876	2876		29.15	13.508	1	753910			42273	12132	29235	29286	47549	47549					0.05480851571473977
LLAGPELI	8	Unmodified	_LLAGPELI_					0	0	0		ATXN3L|p.L196Ifs*8|1|0.86|ENSG00000123594|chrX:13319349-13319350|-/T|frameshift_variant;ENSG00000123594|ENST00000380622|ATXN3L	ATXN3L|p.L196Ifs*8|1|0.86|ENSG00000123594|chrX:13319349-13319350|-/T|frameshift_variant	ATXN3L|p.L196Ifs*8|1|0.86|ENSG00000123594|chrX:13319349-13319350|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.255859375	2	413.257654	824.500755	0.5061	0.00020915	-2.7716	-0.0011454	-2.2655	-0.00093623	413.2564504261921	96.565	0.73563	96.565	96.234	96.969	0					35	16	3	0	0	0	0.95417	1	12318	12318		44.531	2.0566	1	355550			42274	167	29236	29287	47550	47550					0.08148472016898722
LLAGPELI	8	Unmodified	_LLAGPELI_					0	0	0		ATXN3L|p.L196Ifs*8|1|0.86|ENSG00000123594|chrX:13319349-13319350|-/T|frameshift_variant;ENSG00000123594|ENST00000380622|ATXN3L	ATXN3L|p.L196Ifs*8|1|0.86|ENSG00000123594|chrX:13319349-13319350|-/T|frameshift_variant	ATXN3L|p.L196Ifs*8|1|0.86|ENSG00000123594|chrX:13319349-13319350|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.2549743652344	2	413.257654	824.500755	1.3303	0.00054975	-3.646	-0.0015067	-2.3157	-0.00095699	413.2562278249237	96.55	0.78291	96.55	96.231	97.014	-3.0518E-05					36	17	3	0	0	0	0.96719	1	12254	12254		42.474	3.453	1	297330			42275	167	29236	29287	47551	47551					0.08148472016898722
LLAGTIRSK	9	Unmodified	_LLAGTIRSK_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;ENST00000460788.5_1_2:241656783-241663482:-|nuORF;ENST00000492812.5_1_2:241656783-241664929:-|nuORF;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29766845703125	2	479.805834	957.597115	2.1753	0.0010437	-0.34104	-0.00016364	1.8342	0.00088006	479.80399037767796	19.186	0.24679	18.953	18.78	19.027	-0.23345					6	4	2	0	0	0	0.02435	1	375	375		51.335	5.3835	1	18731			42276	4407	29237	29288	47552	47552					0.11662039576845018
LLAGVDRLD	9	Unmodified	_LLAGVDRLD_					0	0	0		nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;ENST00000538501.5_1_11:73950145-73964552:+|nuORF;nc|ENSG00000214517|Q9Y570-3|PPME1;ENST00000541340.5_1_11:73950145-73962300:+|nuORF;nc|ENSG00000214517|Q9Y570-4|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	nc|ENSG00000214517|Q9Y570-2|PPME1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2612609863281	2	486.279649	970.544745	-0.56987	-0.00027711	0.75746	0.00036834	0.1876	9.1224E-05	486.2796088550034	46.169	0.34336	46.221	45.998	46.342	0.051395					11	9	2	0	0	0	0.023596	1	4482	4482		63.306	2.3343	1	383870			42277	10557	29238	29289	47553	47553					0.05829456443234449
LLAGVLSLIN	10	Unmodified	_LLAGVLSLIN_					0	0	0			REV__SLC2A2|p.G148Dfs*7|1|0.52|ENSG00000163581|chr3:171010011-171010011|C/-|frameshift_variant	REV__SLC2A2|p.G148Dfs*7|1|0.52|ENSG00000163581|chr3:171010011-171010011|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8233337402344	2	506.823692	1011.63283	-0.28333	-0.0001436	-0.00067305	-3.4112E-07	-0.284	-0.00014394	506.82340434715854	60.236	0.77855	60.236	59.951	60.73	0					48	20	4	0	0	0	0.34101	1	6911	6911		104.75	11.551	1	3046500	+		42278	25597	29239	29290	47554	47554					0.12748077033859317
LLAHAWLLP	9	Unmodified	_LLAHAWLLP_					0	0	0		ENST00000597643.5_1_19:17441010-17441209:-|nuORF	ENST00000597643.5_1_19:17441010-17441209:-|nuORF	ENST00000597643.5_1_19:17441010-17441209:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.8272094726562	2	517.313295	1032.61204	-0.39736	-0.00020556	-4.0282	-0.0020839	-4.4256	-0.0022894	517.3111658556843	34.843	0.65891	34.656	34.441	35.1	-0.18675					19	16	2	0	0	0	0.024475	1	2604	2604		29.842	5.6388	1	161650			42279	17453	29240	29291	47555	47555					0.09703531444847613
LLAIALLEGGN	11	Unmodified	_LLAIALLEGGN_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000487016.1_1_3:4774792-4777134:+|nuORF	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.30810546875	2	542.324057	1082.63356	-1.5381	-0.00083415	0.50128	0.00027185	-1.0368	-0.00056229	542.8249876821068	80.664	0.5432	80.512	80.217	80.76	-0.15169					17	12	2	0	0	0	0.024752	1	9964	9964		25.574	5.5773	1	89881			42280	6165	29241	29292	47556	47556					0.0955487168291711
LLAIDNDY	8	Unmodified	_LLAIDNDY_					0	0	0			REV__nc|ENSG00000104368|P00750-4|PLAT	REV__nc|ENSG00000104368|P00750-4|PLAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7899475097656	2	468.737283	935.460012	-0.17711	-8.3019E-05	-1.8699	-0.0008765	-2.047	-0.00095952	468.73637967141013	27.154	0.4143	27.154	26.908	27.323	0					20	10	3	0	0	0	0.027866	1	1448	1448		33.516	0	1	204900	+		42281	21439	29242	29293	47557	47557					-0.010299140933852868
LLAIFCKN	8	Unmodified	_LLAIFCKN_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.2647705078125	2	461.264956	920.515359	-1.6026	-0.00073924	1.8565	0.00085635	0.25388	0.00011711	461.2655843697249	92.32	2.1234	92.177	91.617	93.74	-0.14356					89	49	3	0	0	0	1.0572	1	11337	11337		28.254	1.4582	1	1434600			42282	1206	29243	29294	47558	47558					0.051922208933888214
LLAIHPPN	8	Unmodified	_LLAIHPPN_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000120008|ENST00000263461|WDR11	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.14874267578125	2	437.760895	873.507237	-0.14701	-6.4354E-05	1.0657	0.00046651	0.91866	0.00040215	437.7611251798521	42.957	0.82877	42.731	42.447	43.275	-0.22597					41	21	3	0	0	0	0.027866	1	3918	3918		35.201	0	1	503540			42283	38149	29244	29295	47559	47559					0.06542409968267293
LLAILPFYI	9	Unmodified	_LLAILPFYI_					0	0	0		KCNV1|p.A367Cfs*2|1|0.34|ENSG00000164794|chr8:109968492-109968493|-/A|frameshift_variant;ENSG00000164794|ENST00000524391|KCNV1	KCNV1|p.A367Cfs*2|1|0.34|ENSG00000164794|chr8:109968492-109968493|-/A|frameshift_variant	KCNV1|p.A367Cfs*2|1|0.34|ENSG00000164794|chr8:109968492-109968493|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7968139648438	2	531.833529	1061.6525	-0.49009	-0.00026065	3.1719	0.0016869	2.6818	0.0014263	531.8351358451414	93.842	0.27953	93.842	93.687	93.967	0					8	6	2	0	0	0	0.024541	1	11937	11937		29.842	8.1392	1	48789			42284	7322	29245	29296	47560	47560					0.12414453044607399
LLAIPVVKGR	10	Unmodified	_LLAIPVVKGR_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2476806640625	2	533.360776	1064.707	-0.98081	-0.00052313	3.67	0.0019574	2.6891	0.0014343	533.3610863492077	49.04	0.17809	48.76	48.647	48.825	-0.27977					6	4	2	0	0	0	0.03519	1	4887	4887		6.7355	0.42289	1	73936			42285	5031	29246	29297	47561	47561					0.17723464916048215
LLAKKRER	8	Unmodified	_LLAKKRER_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.27679443359375	2	507.33255	1012.65055	-0.10031	-5.089E-05	-3.3208	-0.0016847	-3.4211	-0.0017356	507.33092912603934	78.506	0.17029	78.251	78.17	78.34	-0.25471					5	3	2	0	0	0	0.027866	1	9351	9351		12.207	0	1	20619	+		42286	20141	29247	29298	47562	47562					0.1447283707935867
LLAKPRVL	8	Unmodified	_LLAKPRVL_					0	0	0			REV__IL34|p.Y213Sfs*20|1|0.25|ENSG00000157368|chr16:70660089-70660090|-/AGCTG|frameshift_variant	REV__IL34|p.Y213Sfs*20|1|0.25|ENSG00000157368|chr16:70660089-70660090|-/AGCTG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2462158203125	2	455.315838	908.617122	-0.45427	-0.00020684	-0.12187	-5.5491E-05	-0.57614	-0.00026233	455.3157769745951	42.072	0.68789	41.84	41.391	42.079	-0.23186					20	18	2	0	0	0	0.027866	1	3768	3768		57.453	10.686	1	78841	+		42287	25127	29248	29299	47563	47563					0.15915835307464477
LLAKPRVL	8	Unmodified	_LLAKPRVL_					0	0	0			REV__IL34|p.Y213Sfs*20|1|0.25|ENSG00000157368|chr16:70660089-70660090|-/AGCTG|frameshift_variant	REV__IL34|p.Y213Sfs*20|1|0.25|ENSG00000157368|chr16:70660089-70660090|-/AGCTG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.315838	908.617122	0.050147	2.2833E-05	0.20089	9.1467E-05	0.25103	0.0001143	455.31575917771306	41.87	0.24939	41.747	41.603	41.853	-0.12299	-0.057097	0.00019361	NaN	28.254	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63910	+		42288	25127	29248	29299							0.15915835307464477
LLAKREHKLKL	11	Unmodified	_LLAKREHKLKL_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2890625	3	450.297756	1347.87144	0.024185	1.089E-05	-4.2833	-0.0019288	-4.2591	-0.0019179	450.6301906987231	56.297	0.81989	56.297	55.892	56.712	0					34	22	2	0	0	0	0.02486	1	6203	6203		12.957	6.2979	1	159790	+		42289	24074	29249	29300	47564	47564					0.21141857335965142
LLAKREHKLKL	11	Unmodified	_LLAKREHKLKL_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	450.297756	1347.87144	-0.31913	-0.0001437	-0.40578	-0.00018272	-0.72491	-0.00032643	450.6301698570543	56.351	0.72656	56.194	55.922	56.648	-0.15676	0.13211	0.0045632	NaN	8.7993	57	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124700	+		42290	24074	29249	29300							0.21141857335965142
LLAKREHKLKL	11	Unmodified	_LLAKREHKLKL_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	450.297756	1347.87144	-0.36775	-0.0001656	-1.4132	-0.00063634	-1.7809	-0.00080194	450.2959988187426	56.108	0.56867	55.952	55.607	56.176	-0.15656	-0.11076	0.0032023	NaN	8.7993	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148230	+		42291	24074	29249	29300							0.21141857335965142
LLAKREHKLKL	11	Unmodified	_LLAKREHKLKL_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	450.297756	1347.87144	0.083033	3.739E-05	-4.0043	-0.0018031	-3.9212	-0.0017657	450.29586387874053	56.104	0.67085	55.888	55.447	56.118	-0.21607	-0.17392	-0.00029799	NaN	8.7993	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115520	+		42292	24074	29249	29300							0.21141857335965142
LLAKREHKLKL	11	Unmodified	_LLAKREHKLKL_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	450.297756	1347.87144	-0.74933	-0.00033742	-3.5505	-0.0015988	-4.2999	-0.0019362	450.296274135727	56.195	0.79344	55.98	55.602	56.395	-0.21551	-0.082375	0.00031493	NaN	8.7993	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78075	+		42293	24074	29249	29300							0.21141857335965142
LLAKVVNKV	9	Unmodified	_LLAKVVNKV_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2107238769531	2	492.334227	982.653902	0.10877	5.3552E-05	-0.037336	-1.8382E-05	0.071436	3.517E-05	492.334051893162	49.963	0.33051	49.684	49.472	49.802	-0.27977					11	8	2	0	0	0	0.024541	1	5009	5009		24.203	0	1	85071	+		42294	34101	29250	29301	47565	47565					0.1618808713336648
LLAKVVNKV	9	Unmodified	_LLAKVVNKV_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.334227	982.653902	-0.23228	-0.00011436	0.43925	0.00021626	0.20697	0.0001019	492.3341073222154	49.781	0.4455	49.676	49.411	49.856	-0.10558	-0.0040362	0.00024067	NaN	24.203	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151810	+		42295	34101	29250	29301							0.1618808713336648
LLAKYKSLQW	10	Unmodified	_LLAKYKSLQW_					0	0	0		GALK2-C15orf43|1|fusion;ENSG00000156958|ENST00000560031|GALK2;ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF;GALK2-C15orf43|2|fusion;nc|ENSG00000156958|Q01415-2|GALK2	GALK2-C15orf43|1|fusion	GALK2-C15orf43|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	624.3763427734375	2	625.368798	1248.72304	0.013666	8.546E-06	-3.4928	-0.0021843	-3.4791	-0.0021757	625.3664917384526	100.62	0.55309	100.62	100.31	100.86	0					31	12	3	0	0	0	0.03519	1	12867	12867		25.574	4.7369	1	870320			42296	6561	29251	29302	47566	47566					0.10863126362278308
LLAKYKSLQW	10	Unmodified	_LLAKYKSLQW_					0	0	0		GALK2-C15orf43|1|fusion;ENSG00000156958|ENST00000560031|GALK2;ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF;GALK2-C15orf43|2|fusion;nc|ENSG00000156958|Q01415-2|GALK2	GALK2-C15orf43|1|fusion	GALK2-C15orf43|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	625.3684692382812	2	625.368798	1248.72304	-0.32465	-0.00020303	-3.04	-0.0019011	-3.3646	-0.0021041	625.3667167744693	100.76	0.49556	100.63	100.31	100.81	-0.12503					34	14	3	0	0	0	0.88896	1	12522	12522		54.776	1.6874	1	702600			42297	6561	29251	29302	47567	47567					0.10863126362278308
LLAKYKSLQW	10	Unmodified	_LLAKYKSLQW_					0	0	0		GALK2-C15orf43|1|fusion;ENSG00000156958|ENST00000560031|GALK2;ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF;GALK2-C15orf43|2|fusion;nc|ENSG00000156958|Q01415-2|GALK2	GALK2-C15orf43|1|fusion	GALK2-C15orf43|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	625.3670043945312	2	625.368798	1248.72304	0.067521	4.2225E-05	-3.7301	-0.0023327	-3.6625	-0.0022904	625.3662358707653	100.83	0.46889	100.66	100.37	100.84	-0.17178					28	13	3	0	0	0	0.85955	2	12489	12489;12512		56.721	13.857	1	750910			42298	6561	29251	29302	47568;47569	47568					0.10863126362278308
LLALGHFLL	9	Unmodified	_LLALGHFLL_					0	0	0		ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8031311035156	2	498.81567	995.616788	-0.16379	-8.1703E-05	4.249	0.0021195	4.0852	0.0020378	498.8178638861049	52.964	0.19054	52.817	52.72	52.91	-0.14723					5	4	2	0	0	0	0.023868	1	5666	5666		49.211	10.189	1	62788			42299	11829	29252	29303	47570	47570					0.1188041558760915
LLALHHEL	8	Unmodified	_LLALHHEL_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.9708251953125	2	473.279452	944.544351	-0.19863	-9.4009E-05	2.7691	0.0013105	2.5704	0.0012165	473.28041547318674	49.211	0.38273	49.029	48.845	49.228	-0.18206					10	9	2	0	0	0	0.027866	1	4953	4953		46.766	0	1	126040			42300	8130	29253	29304	47571	47571					0.06986081514037323
LLALIGPPG	9	Unmodified	_LLALIGPPG_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9;REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7748718261719	2	425.773471	849.53239	-0.086541	-3.6847E-05	3.0095	0.0012814	2.923	0.0012445	425.7747981740325	42.002	1.1717	42.002	41.579	42.75	0					125	33	6	0	0	0	1.0281	1	3802	3802		14.664	0	1	65572000	+		42301	21094;36411	29254	29305	47572	47572					0.10160464770854105
LLALIWGYSA	10	Unmodified	_LLALIWGYSA_					0	0	0		ENSG00000186188|ENST00000371481|FFAR4;nc|ENSG00000186188|Q5NUL3-1|FFAR4	ENSG00000186188|ENST00000371481|FFAR4	ENSG00000186188|ENST00000371481|FFAR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.83056640625	2	553.815867	1105.61718	0.23009	0.00012743	-2.7098	-0.0015008	-2.4798	-0.0013733	553.8140480889222	101.74	0.34666	101.61	101.42	101.76	-0.12576					11	7	2	0	0	0	0.03519	1	12631	12631		29.15	0	1	126650			42302	9525	29255	29306	47573	47573					0.06859790516796238
LLALKAHW	8	Unmodified	_LLALKAHW_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.26055908203125	2	476.292362	950.570172	-0.453	-0.00021576	2.4744	0.0011785	2.0214	0.00096276	476.29339345182456	28.335	0.16262	28.183	28.08	28.243	-0.15195					5	3	2	0	0	0	0.027866	1	1629	1629		9.4706	4.7888	1	81813			42303	3602	29256	29307	47574	47574					0.09290975756312037
LLALLLAR	8	Unmodified	_LLALLLAR_					0	0	0		ENSG00000215148|ENST00000399677|PRSS41;nc|ENSG00000215148|Q7RTY9|PRSS41;nc|ENSG00000007038|Q9Y6M0-3|PRSS21;nc|ENSG00000007038|Q9Y6M0-2|PRSS21;ENSG00000007038|ENST00000005995|PRSS21	ENSG00000215148|ENST00000399677|PRSS41	ENSG00000215148|ENST00000399677|PRSS41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7880554199219	2	441.810388	881.606223	0.93861	0.00041469	-1.8094	-0.0007994	-0.87075	-0.00038471	441.80953682455686	40.65	0.81884	40.527	40.336	41.155	-0.12317					31	22	2	0	0	0	0.027866	1	3656	3656		14.664	5.1935	1	147190			42304	10582	29257	29308	47575	47575					0.16068432933172971
LLALLRPAL	9	Unmodified	_LLALLRPAL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.33685302734375	2	490.33677	978.658987	-0.33209	-0.00016284	0.16537	8.1086E-05	-0.16672	-8.1751E-05	490.33674210402376	81.489	0.89236	81.489	81.057	81.95	0					68	21	5	0	0	0	0.4855	1	10142	10142		60.294	2.4827	1	6618100			42305	1020	29258	29309	47576	47576					0.16880390995981998
LLALLRPAL	9	Unmodified	_LLALLRPAL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.3365173339844	2	490.33677	978.658987	-0.45529	-0.00022325	0.18206	8.9272E-05	-0.27323	-0.00013397	490.33678673635853	81.617	1.9966	81.486	81.135	83.131	-0.13075					80	47	3	0	0	0	0.44472	1	10126	10126		62.978	0	1	6795700			42306	1020	29258	29309	47577	47577					0.16880390995981998
LLALQKLGLL	10	Unmodified	_LLALQKLGLL_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.826416015625	2	541.37081	1080.72707	-0.79229	-0.00042892	0.21111	0.00011429	-0.58118	-0.00031463	541.3707321427295	91.137	0.53634	91.014	90.834	91.371	-0.12341					20	12	2	0	0	0	0.03519	1	11178	11178		14.865	2.658	1	205090			42307	6738	29259	29310	47578	47578					0.18993215855994094
LLALQKLGLL	10	Unmodified	_LLALQKLGLL_					0	0	0		nc|ENSG00000159337|Q86XP0-2|PLA2G4D;ENSG00000159337|ENST00000290472|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.826171875	2	541.37081	1080.72707	-0.55397	-0.0002999	0.044319	2.3993E-05	-0.50965	-0.00027591	541.370652332824	91.182	0.45304	91.043	90.863	91.316	-0.13942					18	10	2	0	0	0	0.03519	1	11155	11155		42.396	20.694	1	198900			42308	6738	29259	29310	47579	47579					0.18993215855994094
LLALRHGDLA	10	Unmodified	_LLALRHGDLA_					0	0	0			REV__nc|ENSG00000114948|O75077-3|ADAM23	REV__nc|ENSG00000114948|O75077-3|ADAM23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.76416015625	2	539.822015	1077.62948	-0.23726	-0.00012808	0.28296	0.00015275	0.045695	2.4667E-05	539.8221841692942	50.368	0.30507	50.089	49.953	50.258	-0.27977					10	7	2	0	0	0	0.03519	1	5085	5085		34.173	0	1	351930	+		42309	36583	29260	29311	47580	47580					0.09376826979860198
LLALRHVM	8	Oxidation (M)	_LLALRHVM(Oxidation (M))_		LLALRHVM(1)		LLALRHVM(41)	0	0	1		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.7876281738281	2	484.78913	967.563706	0.011682	5.6633E-06	-1.6915	-0.00082	-1.6798	-0.00081434	484.7879560062432	42.827	1.0239	42.714	42.047	43.071	-0.11253					37	26	2	0	0	0	0.97521	1	3890	3890		41.208	9.6295	1	1083400			42310	2241	29261	29312	47581	47581		87			0.07862714533303006
LLALSLLVIP	10	Unmodified	_LLALSLLVIP_					0	0	0			REV__nc|ENSG00000189099|Q7RTY5-3|PRSS48	REV__nc|ENSG00000189099|Q7RTY5-3|PRSS48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.274658203125	2	526.359911	1050.70527	-0.44888	-0.00023627	2.8417	0.0014958	2.3928	0.0012595	526.3612519046845	34.568	1.0592	34.392	34.252	35.311	-0.17557					58	26	3	0	0	0	0.03519	1	2527	2527		3.1592	0	1	404690	+		42311	28097	29262	29313	47582	47582					0.1819441110740172
LLALVPPHH	9	Unmodified	_LLALVPPHH_					0	0	0			REV__ENST00000407472.5_1_22:19839644-19839932:-|nuORF	REV__ENST00000407472.5_1_22:19839644-19839932:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.80377197265625	2	498.803094	995.591636	-0.50951	-0.00025414	1.3025	0.00064967	0.79295	0.00039552	498.8036589675882	52.964	1.3147	52.817	52.607	53.921	-0.14723					67	35	2	0	0	0	0.80342	1	5701	5701		39.021	7.0666	1	12483000	+		42312	31936	29263	29314	47583	47583					0.09366360785031702
LLALVRPV	8	Unmodified	_LLALVRPV_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.7658996582031	2	440.802563	879.590573	-1.1217	-0.00049443	3.465	0.0015274	2.3434	0.001033	440.8051270563242	37.39	0.27203	37.17	36.999	37.271	-0.2195					9	6	2	0	0	0	0.027866	1	2969	2969		21.702	0	1	87249	+		42313	25347	29264	29315	47584	47584					0.1459614641613598
LLAMKVPN	8	Unmodified	_LLAMKVPN_					0	0	0		ENSG00000005100|ENST00000225296|DHX33;nc|ENSG00000005100|Q9H6R0-2|DHX33;ENST00000575153.5_1_17:5347527-5364435:-|nuORF	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.25250244140625	2	443.264956	884.515359	-0.11436	-5.069E-05	1.2302	0.0005453	1.1158	0.00049461	443.2654048435138	45.316	0.26212	45.105	44.988	45.25	-0.21109					13	7	2	0	0	0	0.027866	1	4275	4275		35.201	9.7505	1	255270			42314	758	29265	29316	47585	47585					0.06848220893391499
LLAMSGEAVE	10	Unmodified	_LLAMSGEAVE_					0	0	0			REV__ENST00000397498.8_1_17:79648623-79648737:-|nuORF	REV__ENST00000397498.8_1_17:79648623-79648737:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3207092285156	2	510.257525	1018.5005	0.24919	0.00012715	-0.7888	-0.00040249	-0.53961	-0.00027534	510.2570186687488	69.292	0.45246	68.999	68.713	69.166	-0.29291					17	11	2	0	0	0	0.03519	1	8323	8323		30.504	17.544	1	110700	+		42315	31774	29266	29317	47586	47586					-0.00801315765261279
LLANKVPAA	9	Unmodified	_LLANKVPAA_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6;nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF;ENST00000546564.5_1_12:120636605-120638589:-|nuORF;ENST00000459899.1_1_14:35857513-35858113:-|nuORF	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.2615966796875	2	448.781828	895.549102	0.3375	0.00015146	-0.26908	-0.00012076	0.068423	3.0707E-05	448.7815562763116	41.28	0.78004	41.28	40.908	41.688	0					58	21	4	0	0	0	0.024354	1	3685	3685		47.916	9.1095	1	2110000			42316	18712	29267	29318	47587	47587					0.09714965656792174
LLANSKLLN	9	Unmodified	_LLANSKLLN_					0	0	0		nc|ENSG00000117152|P49798-3|RGS4;ENST00000491263.1_1_1:163039244-163042290:+|nuORF	nc|ENSG00000117152|P49798-3|RGS4	nc|ENSG00000117152|P49798-3|RGS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2640380859375	2	493.305667	984.596781	0.029425	1.4515E-05	0.67661	0.00033377	0.70603	0.00034829	493.30595707326574	71.328	0.49197	71.339	71.124	71.616	0.010735					19	12	2	0	0	0	0.024374	1	8540	8540		40.778	10.275	1	147800			42317	18198	29268	29319	47588	47588					0.10386619856990364
LLAPCPSLSP	10	Unmodified	_LLAPCPSLSP_					0	0	0			REV__ENST00000491278.5_1_2:128392149-128394989:+|nuORF	REV__ENST00000491278.5_1_2:128392149-128394989:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.8317565917969	2	499.272978	996.531403	-0.54386	-0.00027153	0.8238	0.0004113	0.27994	0.00013977	499.27333423053557	44.708	0.73102	44.708	44.348	45.079	0					34	20	2	0	0	0	0.03519	1	4246	4246		45.952	5.3793	1	632600	+		42318	33721	29269	29320	47589	47589					0.03299882339638316
LLAPDLMAFT	10	Unmodified	_LLAPDLMAFT_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B|p.G1180Vfs*6|1|0.21|ENSG00000132549|chr8:99467505-99467505|G/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;VPS13B|p.I929M|1|0.13|ENSG00000132549|chr8:99275217-99275217|C/G|missense_variant	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	546.293911	1090.57327	-0.51857	-0.00028329	-0.78974	-0.00043143	-1.3083	-0.00071472	546.2943703289457	88.144	0.46979	87.974	87.703	88.173	-0.17053					16	11	2	0	0	0	0.03519	1	10731	10731		35.618	4.0885	1	166790			42319	4619	29270	29321	47590	47590					0.03160438028180579
LLAPGLCR	8	Unmodified	_LLAPGLCR_					0	0	0			REV__nc|ENSG00000125861|Q9GZZ7-3|GFRA4	REV__nc|ENSG00000125861|Q9GZZ7-3|GFRA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.59307861328125	2	421.749473	841.484393	-0.10887	-4.5917E-05	-3.7369	-0.0015761	-3.8458	-0.001622	421.74786179575744	49.37	0.46114	49.269	49.068	49.529	-0.1008					14	11	2	0	0	0	0.027866	1	4993	4993		13.775	0	1	97551	+		42320	22853	29271	29322	47591	47591					0.057310675791541144
LLAPLPGLT	9	Unmodified	_LLAPLPGLT_					0	0	0			REV__ENST00000511663.5_1_4:2811506-2826487:+|nuORF	REV__ENST00000511663.5_1_4:2811506-2826487:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.20953369140625	2	447.786579	893.558604	-0.37659	-0.00016863	-2.5495	-0.0011416	-2.926	-0.0013102	447.78546011226655	39.03	0.42515	38.931	38.665	39.091	-0.098755					14	11	2	0	0	0	0.024517	1	3292	3292		26.796	11.16	1	112800	+		42321	34123	29272	29323	47592	47592					0.1075673394233263
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.30535888671875	2	468.30547	934.596387	-0.14754	-6.9094E-05	0.23194	0.00010862	0.084402	3.9526E-05	468.30547904736426	53.174	0.89842	53.174	52.864	53.763	0					65	24	4	0	0	0	0.22754	2	5739	5727;5739		85.359	19.556	1	4971300			42322	4368	29273	29324	47593;47594	47594					0.12647244927791235
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.3052673339844	2	468.30547	934.596387	-0.39672	-0.00018579	0.51546	0.00024139	0.11874	5.5606E-05	468.3055790196381	53.225	0.95103	53.078	52.797	53.748	-0.14723					61	25	4	0	0	0	0.22754	3	5710	5710;5720;5734		85.359	19.556	1	4475700			42323	4368	29273	29324	47595;47596;47597	47595					0.12647244927791235
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.3055114746094	2	468.30547	934.596387	0.42419	0.00019865	-0.29618	-0.0001387	0.12801	5.9947E-05	468.30519013363244	53.015	0.79907	53.11	52.83	53.629	0.095669					58	21	4	0	0	0	0.15889	3	5629	5629;5641;5654		97.473	29.855	1	4470300			42324	4368	29273	29324	47598;47599;47600	47598					0.12647244927791235
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.30499267578125	2	468.30547	934.596387	0.3963	0.00018559	-0.44493	-0.00020836	-0.048628	-2.2773E-05	468.30514513431166	53.133	0.89383	53.006	52.713	53.607	-0.12705					58	23	4	0	0	0	0.22754	3	5561	5539;5550;5561		85.359	19.035	1	4890300			42325	4368	29273	29324	47601;47602;47603	47603					0.12647244927791235
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.3056640625	2	468.30547	934.596387	0.31937	0.00014956	-0.43225	-0.00020243	-0.11288	-5.286E-05	468.30515072765894	53.319	0.71443	53.061	52.763	53.477	-0.25838					50	18	4	0	0	0	0.20304	3	5561	5561;5572;5584		88.643	20.158	1	4913700			42326	4368	29273	29324	47604;47605;47606	47604					0.12647244927791235
LLAPRPVAV	9	Unmodified	_LLAPRPVAV_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.30517578125	2	468.30547	934.596387	-0.30671	-0.00014364	0.18754	8.7826E-05	-0.11917	-5.581E-05	468.30541666941303	53.269	0.83392	53.079	52.793	53.627	-0.18982					57	22	4	0	0	0	0.22754	3	5561	5551;5561;5573		85.359	19.556	1	5187000			42327	4368	29273	29324	47607;47608;47609	47608					0.12647244927791235
LLAQPLLTL	9	Unmodified	_LLAQPLLTL_					0	0	0			REV__ENST00000545712.6_1_12:109994590-109994683:-|nuORF	REV__ENST00000545712.6_1_12:109994590-109994683:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.29803466796875	2	491.320786	980.627018	-0.73601	-0.00036162	0.59815	0.00029388	-0.13786	-6.7731E-05	491.32097589349655	60.468	0.83107	60.262	59.903	60.734	-0.20599					40	20	3	0	0	0	0.024523	1	6746	6746		15.642	1.8665	1	941450	+		42328	34829	29274	29325	47610	47610					0.1359297852217196
LLAQQQIEL	9	Unmodified	_LLAQQQIEL_					0	0	0			REV__ENST00000521168.5_1_8:68070723-68107652:+|nuORF	REV__ENST00000521168.5_1_8:68070723-68107652:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2803344726562	2	528.308406	1054.60226	-0.016572	-8.7552E-06	-0.50118	-0.00026478	-0.51775	-0.00027353	528.3080571220636	69.137	0.49681	68.895	68.626	69.123	-0.24277					20	11	2	0	0	0	0.024294	1	8004	8004		55.504	4.1688	1	316520	+		42329	21425	29275	29326	47611	47611					0.07714298648784279
LLAQTKKVV	9	Unmodified	_LLAQTKKVV_					0	0	0		ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2771911621094	2	500.331685	998.648816	0.057095	2.8566E-05	3.7148	0.0018586	3.7719	0.0018872	500.33374010170235	61.097	0.25912	61.097	60.921	61.18	0					12	6	3	0	0	0	0.024412	1	7069	7069		31.955	0	1	138570			42330	10814	29276	29327	47612	47612					0.1494378327075765
LLARDDHCL	9	Unmodified	_LLARDDHCL_					0	0	0			REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7377319335938	2	528.268758	1054.52296	-0.37938	-0.00020041	3.5042	0.0018511	3.1248	0.0016507	528.2709251652628	60.983	0.75398	60.777	60.421	61.175	-0.20599					30	18	2	0	0	0	0.024487	1	6752	6752		31.955	12.595	1	258740	+		42331	29667	29277	29328	47613	47613					-0.0021167157699437666
LLARDDHCL	9	Unmodified	_LLARDDHCL_					0	0	0			REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.268758	1054.52296	-1.1997	-0.00063377	4.1739	0.0022049	2.9742	0.0015712	528.7718643252591	60.917	0.6763	60.741	60.403	61.08	-0.1761	-0.041702	0.00015483	NaN	21.96	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236160	+		42332	29667	29277	29328							-0.0021167157699437666
LLARDDHCL	9	Unmodified	_LLARDDHCL_					0	0	0			REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.268758	1054.52296	-0.74308	-0.00039254	4.1541	0.0021945	3.411	0.0018019	528.2710489667064	61.083	0.67446	60.83	60.504	61.179	-0.25373	0.047423	0.00013392	NaN	21.96	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231500	+		42333	29667	29277	29328							-0.0021167157699437666
LLARDSCSM	9	Unmodified	_LLARDSCSM_					0	0	0			REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.8027648925781	2	498.23607	994.457586	-0.057865	-2.883E-05	-1.5486	-0.00077156	-1.6064	-0.00080039	498.2349269655973	53.01	0.50847	53.105	52.792	53.3	0.095669					21	13	2	0	0	0	0.024	1	5586	5586		45.952	0	1	176960	+		42334	32376	29278	29329	47614	47614					-0.0398640909434107
LLAREFLY	8	Unmodified	_LLAREFLY_					0	0	0		ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7337646484375	2	512.794935	1023.57532	-0.31591	-0.000162	-2.0624	-0.0010576	-2.3783	-0.0012196	512.7928140976992	58.774	0.87718	58.586	58.223	59.1	-0.18795					64	21	4	0	0	0	0.027866	1	6527	6527		40.573	5.3719	1	1544500			42335	11339	29279	29330	47615	47615					0.0644723482827203
LLARFFPSAT	10	Unmodified	_LLARFFPSAT_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2936401367188	2	561.818941	1121.62333	0.398	0.0002236	4.0493	0.002275	4.4473	0.0024986	561.8206111937743	82.149	1.2066	81.928	81.445	82.651	-0.22141					48	27	3	0	0	0	0.03519	1	9969	9969		34.173	14.813	1	257890	+		42336	24038	29280	29331	47616	47616					0.06738308748322197
LLARGSPRGLA	11	Unmodified	_LLARGSPRGLA_					0	0	0		nc|ENSG00000186493|Q86SI9-3|IRX2-DT;nc|ENSG00000186493|Q86SI9|IRX2-DT;nc|ENSG00000186493|Q86SI9-2|IRX2-DT	nc|ENSG00000186493|Q86SI9-3|IRX2-DT	nc|ENSG00000186493|Q86SI9-3|IRX2-DT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7691650390625	2	555.840739	1109.66693	-0.83932	-0.00046653	-0.99359	-0.00055228	-1.8329	-0.0010188	555.8397235944678	38.177	0.28817	37.955	37.797	38.085	-0.22149					12	8	2	0	0	0	0.024785	1	3105	3105		54.776	13.998	1	91807			42337	18597	29281	29332	47617	47617					0.11647918245466826
LLARIKSKA	9	Unmodified	_LLARIKSKA_					0	0	0			REV__nc|ENSG00000120694|Q92598-2|HSPH1	REV__nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2769775390625	2	500.337301	998.66005	-0.3288	-0.00016451	2.8798	0.0014409	2.551	0.0012764	500.3389367538122	60.968	0.2197	61.039	60.947	61.167	0.071125					6	5	2	0	0	0	0.024457	1	6950	6950		45.952	3.4775	1	76194	+		42338	22549	29282	29333	47618	47618					0.1606660536489244
LLARKRIL	8	Unmodified	_LLARKRIL_					0	0	0		ENST00000569819.5_1_15:77578821-77638894:-|nuORF	ENST00000569819.5_1_15:77578821-77638894:-|nuORF	ENST00000569819.5_1_15:77578821-77638894:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.33648681640625	2	491.847836	981.681119	0.72954	0.00035882	-0.82792	-0.00040721	-0.098376	-4.8386E-05	491.84724326101275	108.47	0.46706	108.32	108	108.46	-0.15438					34	24	3	0	0	0	0.027866	1	13398	13398		9.4706	0.64823	1	1199600			42339	17010	29283	29334	47619	47619					0.18954615464417657
LLARLMAVE	9	Unmodified	_LLARLMAVE_					0	0	0			REV__ENSG00000159214|ENST00000372318|CCDC24	REV__ENSG00000159214|ENST00000372318|CCDC24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.30181884765625	2	508.30207	1014.58959	-0.35052	-0.00017817	0.19073	9.6946E-05	-0.15979	-8.1223E-05	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.39228	1	6218	6218		66.429	0.96389	1	8370900	+		42340	25240	29284	29335	47620	47620					0.08287563984913504
LLARLTLPV	9	Unmodified	_LLARLTLPV_					0	0	0			REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3343811035156	2	498.334227	994.653902	-0.48227	-0.00024033	0.22588	0.00011256	-0.25639	-0.00012777	498.33429074647324	74.367	0.55562	74.376	74.051	74.607	0.0096512					47	12	4	0	0	0	0.25032	1	9024	9024		82.305	2.854	1	5411700	+		42341	31177	29285	29336	47621	47621					0.15636087133373167
LLARNLPW	8	Unmodified	_LLARNLPW_					0	0	0			REV__ENSG00000172967|ENST00000684488|XKR3	REV__ENSG00000172967|ENST00000684488|XKR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.22821044921875	2	491.795269	981.575986	-0.1725	-8.4834E-05	3.2585	0.0016025	3.086	0.0015177	491.79665562768565	62.394	0.35352	62.136	61.897	62.25	-0.25824					10	8	2	0	0	0	0.027866	1	6981	6981		28.254	0	1	65085	+		42342	26726	29286	29337	47622	47622					0.08446074267976655
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3341369628906	2	498.334227	994.653902	2.1217	0.0010573	-2.3014	-0.0011469	-0.17974	-8.9568E-05	498.3330237962994	74.302	0.59526	74.302	73.955	74.551	0					47	13	4	0	0	0	0.6504	2	9120	9073;9120		49.442	3.5442	1	5410200			42343	2760	29287	29338	47623;47624	47624					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2558898925781	2	498.334227	994.653902	-0.19348	-9.642E-05	0.39994	0.0001993	0.20646	0.00010288	498.3343739196396	80.3	1.1436	80.3	79.994	81.138	0					45	27	3	0	0	0	0.024405	1	9966	9966		44.117	17.321	1	341510			42344	2760	29287	29338	47625	47625					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.74542236328125	2	498.334227	994.653902	0.4612	0.00022983	-0.92052	-0.00045872	-0.45932	-0.00022889	498.33365604942816	74.84	1.0355	74.84	74.551	75.586	0					79	26	4	0	0	0	0.024294	1	9212	9212		45.952	1.8352	1	5041300			42345	2760	29287	29338	47626	47626					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.3341369628906	2	498.334227	994.653902	0.37447	0.00018661	-0.59923	-0.00029862	-0.22476	-0.00011201	498.33387218002036	74.564	0.59087	74.305	73.986	74.577	-0.25887					46	13	4	0	0	0	0.85329	1	9078	9078		35.618	2.1027	1	5843200			42346	2760	29287	29338	47627	47627					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.3340148925781	2	498.334227	994.653902	-0.068515	-3.4143E-05	-0.47794	-0.00023817	-0.54645	-0.00027232	498.3338565140082	75.079	0.95576	74.826	74.583	75.539	-0.25311					73	24	4	0	0	0	0.17455	2	9156	9145;9156		94.006	10.345	1	4745800			42347	2760	29287	29338	47628;47629	47629					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3339538574219	2	498.334227	994.653902	-0.081498	-4.0613E-05	-0.44783	-0.00022317	-0.52933	-0.00026378	498.33388290643506	74.89	0.89658	74.9	74.607	75.504	0.010368					74	22	4	0	0	0	0.27161	1	9081	9081		79.451	0	1	4856900			42348	2760	29287	29338	47630	47630					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.334227	994.653902	-1.0008	-0.00049872	1.3186	0.00065709	0.3178	0.00015837	498.3348283057171	80.464	1.1465	80.312	80.049	81.196	-0.15168	0.0028635	0.00040621	NaN	58.782	48	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327400			42349	2760	29287	29338							0.15636087133384535
LLARQWPL	8	Unmodified	_LLARQWPL_					0	0	0			REV__ENST00000568591.5_1_16:2156634-2167660:-|nuORF	REV__ENST00000568591.5_1_16:2156634-2167660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.8033752441406	2	498.803094	995.591636	-0.076385	-3.8101E-05	0.61262	0.00030558	0.53624	0.00026748	498.8033988625939	52.928	2.1732	52.928	51.836	54.01	0					154	58	5	0	0	0	1.0239	1	5707	5707		33.516	1.5607	1	12555000	+		42350	35345	29288	29339	47631	47631					0.09366360785031702
LLARRQTD	8	Unmodified	_LLARRQTD_					0	0	0			REV__nc|ENSG00000249115|O94927-2|HAUS5	REV__nc|ENSG00000249115|O94927-2|HAUS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.291748046875	2	486.78289	971.551228	0.087464	4.2576E-05	1.8577	0.00090427	1.9451	0.00094685	486.78392726968696	94.454	0.71368	94.307	94.086	94.8	-0.14771					26	16	2	0	0	0	0.027866	1	11601	11601		20.482	0	1	146000	+		42351	29014	29289	29340	47632	47632					0.06431394394610379
LLARRSLQAQL	11	Unmodified	_LLARRSLQAQL_					0	0	0		ENST00000464102.5_1_3:45776682-45785158:+|nuORF;nc|ENSG00000211456|Q9NTJ5-2|SACM1L;ENSG00000211456|ENST00000389061|SACM1L	ENST00000464102.5_1_3:45776682-45785158:+|nuORF	ENST00000464102.5_1_3:45776682-45785158:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.59765625	3	423.598094	1267.77245	-0.35558	-0.00015062	-0.85644	-0.00036278	-1.212	-0.00051341	423.59775231961066	104.52	0.65574	104.39	104.06	104.71	-0.12927					52	19	4	0	0	0	1.0685	1	13017	13017		12.957	0	1	289440			42352	10477	29290	29341	47633	47633					0.14927834371087556
LLARTPPPG	9	Unmodified	_LLARTPPPG_					0	0	0			REV__AJUBA|p.P100Lfs*142|1|0.24|ENSG00000129474|chr14:22981968-22981968|G/-|frameshift_variant	REV__AJUBA|p.P100Lfs*142|1|0.24|ENSG00000129474|chr14:22981968-22981968|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.27947998046875	2	461.279452	920.544351	0.63098	0.00029106	-0.74354	-0.00034298	-0.11256	-5.1924E-05	461.2790168142663	42.709	0.4703	42.735	42.427	42.897	0.026012					35	12	3	0	0	0	0.4855	1	3901	3901		60.294	1.512	1	6928000	+		42353	19094	29291	29342	47634	47634					0.08090081514035319
LLARTQPQV	9	Unmodified	_LLARTQPQV_					0	0	0			REV__ENST00000292524.5_1_8:145750285-145750465:+|nuORF	REV__ENST00000292524.5_1_8:145750285-145750465:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.30810546875	2	513.308741	1024.60293	-0.81778	-0.00041977	0.034693	1.7808E-05	-0.78309	-0.00040197	513.3087525472763	54.497	1.1779	54.497	54.249	55.427	0					90	33	5	0	0	0	0.29158	1	5980	5980		76.774	2.7994	1	7591300	+		42354	29952	29292	29343	47635	47635					0.0916113808850696
LLARVAGRRRL	11	Unmodified	_LLARVAGRRRL_					0	0	0		ENST00000600437.1_1_19:39989581-39996225:+|nuORF;ENSG00000090932|ENST00000356433|DLL3;nc|ENSG00000090932|Q9NYJ7|DLL3	ENST00000600437.1_1_19:39989581-39996225:+|nuORF	ENST00000600437.1_1_19:39989581-39996225:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.2643737792969	3	427.617712	1279.83131	-0.7876	-0.00033679	-2.163	-0.00092493	-2.9506	-0.0012617	427.61693718489465	53.878	0.17836	53.742	53.63	53.808	-0.13617					9	5	2	0	0	0	0.024792	1	5664	5664		24.232	8.225	1	263160			42355	1945	29293	29344	47636	47636					0.2025835545607606
LLASALKQK	9	Unmodified	_LLASALKQK_					0	0	0			REV__ENSG00000124217|ENST00000244051|MOCS3	REV__ENSG00000124217|ENST00000244051|MOCS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2612609863281	2	486.316035	970.617516	-0.54618	-0.00026562	-0.065139	-3.1678E-05	-0.61132	-0.00029729	486.31589280701075	46.342	0.66497	46.393	46.131	46.796	0.051395					30	18	2	0	0	0	0.024205	1	4482	4482		53.351	22.848	1	176310	+		42356	22751	29294	29345	47637	47637					0.13103210236658924
LLASCCSTG	9	Unmodified	_LLASCCSTG_					0	0	0			REV__ENST00000493275.5_1_6:26383438-26385267:+|nuORF	REV__ENST00000493275.5_1_6:26383438-26385267:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.2619323730469	2	427.690964	853.367374	-0.38235	-0.00016353	2.5451	0.0010885	2.1628	0.00092499	427.6920385057174	90.574	0.46377	90.449	90.249	90.712	-0.12512					16	10	2	0	0	0	0.024436	1	11110	11110		38.806	9.6566	1	28793	+		42357	30797	29295	29346	47638	47638					-0.06517458422763411
LLASGGISSI	10	Unmodified	_LLASGGISSI_					0	0	0			REV__ENST00000545698.1_1_12:104359681-104373925:+|nuORF	REV__ENST00000545698.1_1_12:104359681-104373925:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2673034667969	2	459.26875	916.522947	0.086246	3.961E-05	0.72188	0.00033154	0.80812	0.00037115	459.2690827463652	48.255	1.7426	48.068	47.596	49.339	-0.18684					105	46	3	0	0	0	1.0781	1	4801	4801		35.618	0	1	5330000	+		42358	34807	29296	29347	47639	47639					0.06134651694674176
LLASGVHLVK	10	Unmodified	_LLASGVHLVK_					0	0	0		ENST00000267970.8_1_15:77338989-77339115:-|nuORF	ENST00000267970.8_1_15:77338989-77339115:-|nuORF	ENST00000267970.8_1_15:77338989-77339115:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2791137695312	2	518.829309	1035.64407	-0.030382	-1.5763E-05	-0.71874	-0.0003729	-0.74913	-0.00038867	518.8288148441432	61.922	0.55932	61.695	61.455	62.015	-0.22663					23	14	2	0	0	0	0.03519	1	7176	7176		39.253	14.734	1	402930			42359	11622	29297	29348	47640	47640					0.12766899127996112
LLASLEGLKG	10	Unmodified	_LLASLEGLKG_					0	0	0		MROH7|p.A701S|1|0.17|ENSG00000184313|chr1:54679314-54679314|G/T|missense_variant	MROH7|p.A701S|1|0.17|ENSG00000184313|chr1:54679314-54679314|G/T|missense_variant	MROH7|p.A701S|1|0.17|ENSG00000184313|chr1:54679314-54679314|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2923278808594	2	500.8055	999.596446	-0.41942	-0.00021005	0.54926	0.00027507	0.12984	6.5024E-05	500.8057934571982	57.833	0.20179	57.655	57.473	57.675	-0.17775					6	4	2	0	0	0	0.03519	1	6326	6326		20.947	0	1	85619			42360	17993	29298	29349	47641	47641					0.09663200137140393
LLASLSRSW	9	Unmodified	_LLASLSRSW_					0	0	0			REV__nc|ENSG00000039068|P12830-2|CDH1	REV__nc|ENSG00000039068|P12830-2|CDH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7482299804688	2	516.795466	1031.57638	-0.23449	-0.00012118	0.1439	7.4368E-05	-0.090588	-4.6815E-05	516.7953025991258	63.72	0.6961	63.493	63.212	63.908	-0.22773					48	17	4	0	0	0	0.024263	1	7203	7203		60.972	13.012	1	2659900	+		42361	20081	29299	29350	47642	47642					0.06185449197187154
LLASNLAQFL	10	Unmodified	_LLASNLAQFL_					0	0	0		ENSG00000139151|ENST00000266505|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	ENSG00000139151|ENST00000266505|PLCZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.318774	1088.623	0.14148	7.7154E-05	-4.0226	-0.0021936	-3.8811	-0.0021164	545.3163921405243	101.52	0.93464	101.39	101.03	101.96	-0.12576					49	22	4	0	0	0	1.0393	1	12612	12612		40.778	2.9666	1	1111300			42362	5303	29300	29351	47643	47643					0.08222889028479585
LLASPLAIFR	10	Unmodified	_LLASPLAIFR_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2404174804688	2	550.844959	1099.67537	-0.96215	-0.00053	0.89156	0.00049111	-0.070596	-3.8887E-05	550.8451592147939	82.912	0.8523	82.938	82.659	83.512	0.026558					29	19	2	0	0	0	0.03519	1	10291	10291		31.53	3.6476	1	100690			42363	9413	29301	29352	47644	47644					0.12951472162058053
LLASQSHHFA	10	Unmodified	_LLASQSHHFA_					0	0	0			REV__nc|ENSG00000090372|Q9NRL3-3|STRN4	REV__nc|ENSG00000090372|Q9NRL3-3|STRN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7691650390625	2	555.788173	1109.56179	-0.83023	-0.00046143	0.74483	0.00041397	-0.085401	-4.7465E-05	555.7893574338782	38.193	0.46011	37.971	37.761	38.221	-0.22149					34	13	4	0	0	0	0.03519	1	3105	3105		42.396	0	1	1085900	+		42364	20871	29302	29353	47645	47645					0.011393770490485622
LLATAVYLF	9	Unmodified	_LLATAVYLF_					0	0	0			REV__OR7D4|p.V198F|1|0.15|ENSG00000174667|chr19:9214246-9214246|C/A|missense_variant	REV__OR7D4|p.V198F|1|0.15|ENSG00000174667|chr19:9214246-9214246|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.79876708984375	2	505.799686	1009.58482	-0.99624	-0.0005039	-2.3472	-0.0011872	-3.3435	-0.0016911	505.79839942248833	80.921	0.76334	80.769	80.514	81.277	-0.15168					47	18	4	0	0	0	0.36105	1	10026	10026		68.485	7.5128	1	1395100	+		42365	37331	29303	29354	47646	47646					0.08041003113794432
LLATCVDQ	8	Unmodified	_LLATCVDQ_					0	0	0			REV__ENST00000455854.2_1_6:43492784-43493024:-|nuORF	REV__ENST00000455854.2_1_6:43492784-43493024:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.8523864746094	2	431.720578	861.426604	0.1518	6.5534E-05	0.29685	0.00012816	0.44865	0.00019369	431.720672462347	45.7	0.54402	45.744	45.512	46.056	0.043877					25	15	2	0	0	0	0.027866	1	4433	4433		45.952	0	1	222060	+		42366	32790	29304	29355	47647	47647					-0.009652391369286306
LLATGAVGR	9	Unmodified	_LLATGAVGR_					0	0	0			REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF	REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2296447753906	2	429.263802	856.513051	-0.1095	-4.7004E-05	-1.3094	-0.00056207	-1.4189	-0.00060907	429.2634995565189	42.21	0.78479	42.078	41.889	42.674	-0.13219					34	22	3	0	0	0	0.024205	1	3943	3943		44.117	0	1	128640	+		42367	34529	29305	29356	47648	47648					0.0790550847995064
LLATLDRLL	9	Unmodified	_LLATLDRLL_					0	0	0			REV__ENST00000301067.11_1_12:49447780-49448195:-|nuORF	REV__ENST00000301067.11_1_12:49447780-49448195:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2902221679688	2	514.329142	1026.64373	-0.31673	-0.00016291	-0.39438	-0.00020284	-0.71111	-0.00036575	514.3288790570152	70.246	0.41326	69.979	69.746	70.159	-0.26725					13	9	2	0	0	0	0.024354	1	8189	8189		30.504	0	1	100360	+		42368	30054	29306	29357	47649	47649					0.13147479408144136
LLATLIAVDI	10	Unmodified	_LLATLIAVDI_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.246826171875	2	521.33135	1040.64815	-1.1619	-0.00060575	0.76364	0.00039811	-0.39828	-0.00020763	521.3316236084644	83.73	0.94369	83.73	83.52	84.463	0					39	21	2	0	0	0	0.03519	1	10451	10451		14.137	10.152	1	387420	+		42369	20933	29307	29358	47650	47650					0.12944943831053024
LLATPIAAI	9	Unmodified	_LLATPIAAI_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.78802490234375	2	441.786579	881.558604	0.19884	8.7846E-05	2.7852	0.0012305	2.9841	0.0013183	441.78771995741124	42.661	0.83592	42.661	41.987	42.823	0					57	23	5	0	0	0	0.75282	1	3938	3938		42.474	1.9018	1	11253000			42370	2482	29308	29359	47651	47651					0.11308733942325944
LLAVAKPF	8	Unmodified	_LLAVAKPF_					0	0	0		ENSG00000187714|ENST00000374115|SLC18A3;SLC18A3|p.A268P|1|0.27|ENSG00000187714|chr10:49611542-49611542|G/C|missense_variant;SLC18A3|p.L298Sfs*19|1|0.31|ENSG00000187714|chr10:49611631-49611631|G/-|frameshift_variant	ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.73760986328125	2	429.776014	857.537475	-1.0649	-0.00045767	1.4993	0.00064438	0.43442	0.00018671	429.77665685622225	39.798	0.15065	39.686	39.603	39.754	-0.11222					6	3	2	0	0	0	0.027866	1	3446	3446		24.504	19.417	1	43787			42371	9649	29309	29360	47652	47652					0.1030076863346494
LLAVAKPF	8	Unmodified	_LLAVAKPF_					0	0	0		ENSG00000187714|ENST00000374115|SLC18A3;SLC18A3|p.A268P|1|0.27|ENSG00000187714|chr10:49611542-49611542|G/C|missense_variant;SLC18A3|p.L298Sfs*19|1|0.31|ENSG00000187714|chr10:49611631-49611631|G/-|frameshift_variant	ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	429.7378234863281	2	429.776014	857.537475	-0.47735	-0.00020515	2.7882	0.0011983	2.3108	0.00099314	429.7774613016172	39.971	0.14386	39.994	39.907	40.051	0.023006					5	3	2	0	0	0	0.027866	1	3418	3418		31.579	1.7373	1	113210			42372	9649	29309	29360	47653	47653					0.1030076863346494
LLAVDEKEID	10	Unmodified	_LLAVDEKEID_					0	0	0		ENST00000388822.9_1_4:119631314-119631464:+|nuORF	ENST00000388822.9_1_4:119631314-119631464:+|nuORF	ENST00000388822.9_1_4:119631314-119631464:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	572.8085327148438	2	572.808436	1143.60232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.71	1	105.71	105.21	106.21	-0.0013123								0	0	0	0.74119	1	13529	13529		34.173	0	1				42373	13372	29310	29361	47654	47654					0.03626253858124073
LLAVDRGR	8	Unmodified	_LLAVDRGR_					0	0	0		ENST00000373709.7_1_1:31898701-31899576:+|nuORF	ENST00000373709.7_1_1:31898701-31899576:+|nuORF	ENST00000373709.7_1_1:31898701-31899576:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2740478515625	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	0.99042	1	11455	11455		38.806	1.7777	1	55183000			42374	13089	29311	29362	47655	47655					0.08152313228515595
LLAVGAARAR	10	Unmodified	_LLAVGAARAR_					0	0	0			REV__ENST00000421699.6_2_9:131018308-131018410:-|nuORF	REV__ENST00000421699.6_2_9:131018308-131018410:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7665100097656	2	499.3169	996.619247	-0.1952	-9.7468E-05	0.038552	1.925E-05	-0.15665	-7.8219E-05	499.3166975753677	40.86	1.0092	40.883	40.349	41.358	0.023006					66	28	4	0	0	0	0.03519	1	3540	3540		27.882	0	1	2361600	+		42375	32185	29312	29363	47656	47656					0.12080264045266631
LLAVGPFLAL	10	Unmodified	_LLAVGPFLAL_					0	0	0			REV__ENST00000469684.1_1_15:44038662-44048907:+|nuORF	REV__ENST00000469684.1_1_15:44038662-44048907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.80194091796875	2	507.323328	1012.6321	0.09865	5.0047E-05	-4.4308	-0.0022478	-4.3321	-0.0021978	507.3209194649922	91.315	0.54436	91.176	90.943	91.487	-0.13941					25	12	3	0	0	0	0.03519	1	11157	11157		44.531	2.1349	1	235140	+		42376	26096	29313	29364	47657	47657					0.12629282384773433
LLAVGPQRGPR	11	Unmodified	_LLAVGPQRGPR_					0	0	0		ENST00000361711.7_1_16:83998807-83998978:+|nuORF	ENST00000361711.7_1_16:83998807-83998978:+|nuORF	ENST00000361711.7_1_16:83998807-83998978:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.3535766601562	2	582.354014	1162.69348	-1.4953	-0.00087077	0.5142	0.00029945	-0.98105	-0.00057132	582.3541963101079	102.27	0.85596	102.27	101.95	102.81	0					90	19	7	0	0	0	1.018	1	13098	13098		32.812	4.7309	1	8600900			42377	12803	29314	29365	47658	47658					0.1186360713677459
LLAVGPQRGPR	11	Unmodified	_LLAVGPQRGPR_					0	0	0		ENST00000361711.7_1_16:83998807-83998978:+|nuORF	ENST00000361711.7_1_16:83998807-83998978:+|nuORF	ENST00000361711.7_1_16:83998807-83998978:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3536376953125	2	582.354014	1162.69348	-0.88276	-0.00051408	-0.059109	-3.4422E-05	-0.94187	-0.0005485	582.3538408674295	102.24	1.4134	102.24	101.94	103.36	0.0073471					111	33	7	0	0	0	0.98904	1	13058	13058		39.253	12.56	1	7932900			42378	12803	29314	29365	47659	47659					0.1186360713677459
LLAVGRLVWH	10	Unmodified	_LLAVGRLVWH_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.3535766601562	2	582.356025	1162.6975	-0.28496	-0.00016595	-4.2589	-0.0024802	-4.5439	-0.0026462	582.3534070628981	102.44	0.86188	102.26	101.97	102.84	-0.17178					81	20	6	0	0	0	1.1166	2	12689	12689;12743		30.504	6.3009	1	8672600	+		42379	20082	29315	29366	47660;47661	47660					0.12265696630493039
LLAVKLEP	8	Unmodified	_LLAVKLEP_					0	0	0		ENST00000480825.6_1_1:36937516-36938309:-|nuORF	ENST00000480825.6_1_1:36937516-36938309:-|nuORF	ENST00000480825.6_1_1:36937516-36938309:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.78790283203125	2	441.786579	881.558604	-0.21775	-9.62E-05	3.3208	0.0014671	3.103	0.0013709	441.78792845566716	42.96	0.76768	42.734	42.105	42.873	-0.22597					49	19	4	0	0	0	1.0239	1	3891	3891		33.516	5.2613	1	7360500			42380	15214	29316	29367	47662	47662					0.11308733942314575
LLAVLAGLL	9	Unmodified	_LLAVLAGLL_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ENST00000557555.1_3_12:56079014-56082669:-|nuORF	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7878723144531	2	441.804771	881.59499	0.26485	0.00011701	1.9612	0.00086646	2.226	0.00098347	441.8064080043057	40.606	0.66832	40.606	40.347	41.016	0					22	18	2	0	0	0	0.024389	1	3554	3554		39.021	0	1	296810			42381	4892	29317	29368	47663	47663					0.1494561083904955
LLAVLISELE	10	Unmodified	_LLAVLISELE_					0	0	0			REV__nc|ENSG00000118702|P01286-2|GHRH	REV__nc|ENSG00000118702|P01286-2|GHRH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.3345947265625	2	550.33409	1098.65363	0.10517	5.7879E-05	0.59766	0.00032892	0.70284	0.00038679	550.3342510766763	74.645	0.59049	74.382	74.142	74.732	-0.26326					27	13	3	0	0	0	0.87795	1	8815	8815		55.504	14.726	1	987650	+		42382	22419	29318	29369	47664	47664					0.1082462262286299
LLAVLLMGSA	10	Unmodified	_LLAVLLMGSA_					0	0	0			REV__ENSG00000255974|ENST00000301141|CYP2A6	REV__ENSG00000255974|ENST00000301141|CYP2A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.3008728027344	2	494.298996	986.583439	0.57173	0.00028261	2.7614	0.001365	3.3331	0.0016476	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	1.1166	1	12331	12331		30.504	1.3541	1	37513000	+		42383	29074	29319	29370	47665	47665					0.08961045753403596
LLAVLVFVM	9	Unmodified	_LLAVLVFVM_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.8141174316406	2	502.814282	1003.61401	0.44786	0.00022519	-1.6582	-0.00083378	-1.2104	-0.00060859	502.8135488206677	96.216	2.0121	96.08	95.682	97.694	-0.13671					136	45	5	0	0	0	0.93795	1	11855	11855		29.842	5.6388	1	16921000			42384	5244	29320	29371	47666	47666					0.11234824138443855
LLAVLVFVM	9	Unmodified	_LLAVLVFVM_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.8135986328125	2	502.814282	1003.61401	-0.52334	-0.00026314	-0.88111	-0.00044303	-1.4044	-0.00070618	502.8139776910766	96.308	1.7928	96.151	95.794	97.587	-0.15646					121	40	5	0	0	0	0.93795	1	11892	11892		29.842	3.1486	1	13743000			42385	5244	29320	29371	47667	47667					0.11234824138443855
LLAVLYCL	8	Unmodified	_LLAVLYCL_					0	0	0		ENST00000526139.1_1_11:88911121-88933495:+|nuORF;nc|ENSG00000077498|P14679-2|TYR;ENSG00000077498|ENST00000263321|TYR	ENST00000526139.1_1_11:88911121-88933495:+|nuORF	ENST00000526139.1_1_11:88911121-88933495:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.2371520996094	2	454.269707	906.524861	-0.84036	-0.00038175	4.3839	0.0019915	3.5435	0.0016097	454.2715713131744	43.604	0.31397	43.384	43.176	43.49	-0.21939					17	8	3	0	0	0	0.027866	1	3994	3994		43.626	0	1	504360			42386	1614	29321	29372	47668	47668					0.06785989178922591
LLAVPALNC	9	Unmodified	_LLAVPALNC_					0	0	0		ENST00000425637.2_1_12:123738833-123739055:+|nuORF	ENST00000425637.2_1_12:123738833-123739055:+|nuORF	ENST00000425637.2_1_12:123738833-123739055:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2641296386719	2	457.262413	912.510274	0.17052	7.7972E-05	4.031	0.0018432	4.2015	0.0019212	457.26418172468357	78.803	2.5833	78.647	77.361	79.944	-0.15591					144	60	5	0	0	0	0.78069	1	9398	9398		40.573	6.4001	1	998950			42387	14067	29322	29373	47669	47669					0.050519170307552486
LLAVPTVMSP	10	Unmodified	_LLAVPTVMSP_					0	0	0		GRM2|p.F67Lfs*89|1|0.26|ENSG00000164082|chr3:51709180-51709180|T/-|frameshift_variant	GRM2|p.F67Lfs*89|1|0.26|ENSG00000164082|chr3:51709180-51709180|T/-|frameshift_variant	GRM2|p.F67Lfs*89|1|0.26|ENSG00000164082|chr3:51709180-51709180|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.298583984375	2	514.296453	1026.57835	-0.2643	-0.00013593	3.8453	0.0019776	3.581	0.0018417	514.2983788996071	95.184	0.77753	95.188	94.791	95.569	0.0041199					50	17	4	0	0	0	1.0665	1	12030	12030		37.159	6.6555	1	1155800			42388	17698	29323	29374	47670	47670					0.06612741890762663
LLAVPYGWTT	10	Unmodified	_LLAVPYGWTT_					0	0	0			REV__ENSG00000149506|ENST00000278853|ZP1	REV__ENSG00000149506|ENST00000278853|ZP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3397216796875	2	560.8055	1119.59645	-0.15829	-8.8772E-05	-4.048	-0.0022701	-4.2063	-0.0023589	560.804553696351	101.17	0.2507	101.17	100.99	101.24	0					8	5	2	0	0	0	0.03519	1	12942	12942		24.203	9.3379	1	37668	+		42389	24684	29324	29375	47671	47671					0.04143200137127678
LLAVRMTI	8	Unmodified	_LLAVRMTI_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.7871398925781	2	458.786056	915.557558	-0.3482	-0.00015975	2.8329	0.0012997	2.4847	0.0011399	458.78731010977094	92.159	2.2616	92.159	91.383	93.645	0					168	53	6	0	0	0	1.0133	2	11679	11679;11715		35.201	5.3592	1	28740000	+		42390	27801	29325	29376	47672;47673	47672					0.09640196301768356
LLAVRMTI	8	Unmodified	_LLAVRMTI_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7873840332031	2	458.786056	915.557558	-0.24715	-0.00011339	2.6403	0.0012113	2.3932	0.001098	458.78724723277566	92.233	1.8673	92.224	91.752	93.619	-0.0082932					114	44	3	0	0	0	1.0133	1	11639	11639		35.201	5.3592	1	30570000	+		42391	27801	29325	29376	47674	47674					0.09640196301768356
LLAVRMTI	8	Unmodified	_LLAVRMTI_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.7868347167969	2	458.786056	915.557558	0.65247	0.00029934	1.8977	0.00087062	2.5501	0.00117	458.7868940578265	92.184	1.9062	92.193	91.701	93.608	0.0094147					162	45	6	0	0	0	1.0133	2	11608	11608;11632		35.201	5.3592	1	27672000	+		42392	27801	29325	29376	47675;47676	47675					0.09640196301768356
LLAVRMTI	8	Unmodified	_LLAVRMTI_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.7872314453125	2	458.786056	915.557558	-0.2269	-0.0001041	2.7104	0.0012435	2.4835	0.0011394	458.7872764164579	92.323	1.6929	92.2	91.76	93.453	-0.12242					146	39	6	0	0	0	0.95417	1	11361	11361		44.531	2.0566	1	20312000	+		42393	27801	29325	29376	47677	47677					0.09640196301768356
LLAVRMTI	8	Unmodified	_LLAVRMTI_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.7878112792969	2	458.786056	915.557558	0.21652	9.9336E-05	2.3973	0.0010999	2.6138	0.0011992	458.78713516574805	92.333	1.7818	92.192	91.704	93.485	-0.14131					127	41	5	0	0	0	1.0239	1	11371	11371		33.516	1.5607	1	18009000	+		42394	27801	29325	29376	47678	47678					0.09640196301768356
LLAVRMTI	8	Unmodified	_LLAVRMTI_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	458.786056	915.557558	0.21652	9.9336E-05	2.3973	0.0010999	2.6138	0.0011992	458.78713516574805	92.333	1.7818	92.192	91.704	93.485	-0.14131	0.005067	-0.00026663	NaN	44.531	127	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18009000	+		42395	27801	29325	29376							0.09640196301768356
LLAVSPLWNIR	11	Unmodified	_LLAVSPLWNIR_					0	0	0		ENST00000261735.3_1_12:112460511-112460547:+|nuORF	ENST00000261735.3_1_12:112460511-112460547:+|nuORF	ENST00000261735.3_1_12:112460511-112460547:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.384033203125	2	641.387522	1280.76049	-0.27889	-0.00017887	-4.0715	-0.0026114	-4.3504	-0.0027903	641.384701093394	101.52	0.72579	101.35	101.05	101.78	-0.17178					47	15	4	0	0	0	1.0238	1	12581	12581		31.53	4.4825	1	985230			42396	11480	29326	29377	47679	47679					0.131342176278622
LLAVTKRLP	9	Unmodified	_LLAVTKRLP_					0	0	0			REV__ENST00000435624.2_2_14:97411522-97411696:+|nuORF	REV__ENST00000435624.2_2_14:97411522-97411696:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.79876708984375	2	505.839677	1009.6648	-1.0417	-0.00052693	0.76168	0.00038529	-0.28001	-0.00014164	505.8399220799775	80.726	0.89554	80.575	80.259	81.155	-0.15168					41	21	3	0	0	0	0.024263	1	10026	10026		60.972	9.6365	1	610620	+		42397	32440	29327	29378	47680	47680					0.16035489507646616
LLAVTPEL	8	Unmodified	_LLAVTPEL_					0	0	0			REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2619934082031	2	428.262936	854.51132	0.10911	4.6729E-05	-2.7902	-0.0011949	-2.6811	-0.0011482	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0574	1	11379	11379		21.702	0	1	88816000	+		42398	25578	29328	29379	47681	47681					0.07824454671310832
LLAVTPEL	8	Unmodified	_LLAVTPEL_					0	0	0			REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.261962890625	2	428.262936	854.51132	0.49679	0.00021276	-3.3115	-0.0014182	-2.8147	-0.0012054	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0572	1	11396	11396		28.254	1.4582	1	86424000	+		42399	25578	29328	29379	47682	47682					0.07824454671310832
LLAVTPEL	8	Unmodified	_LLAVTPEL_					0	0	0			REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2618103027344	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0574	1	11013	11013		21.702	0	1	68116000	+		42400	25578	29328	29379	47683	47683					0.07824454671310832
LLAVTPEL	8	Unmodified	_LLAVTPEL_					0	0	0			REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2622375488281	2	428.262936	854.51132	0.60688	0.0002599	-3.4974	-0.0014978	-2.8905	-0.0012379	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.0574	1	11028	11028		21.702	0	1	63872000	+		42401	25578	29328	29379	47684	47684					0.07824454671310832
LLAVVTGLP	9	Unmodified	_LLAVVTGLP_					0	0	0			REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7879638671875	2	441.786579	881.558604	0.36074	0.00015937	2.6381	0.0011655	2.9989	0.0013249	441.78763511523596	42.748	0.64491	42.774	42.289	42.934	0.026012					56	17	5	0	0	0	0.88411	2	3889	3889;3898		33.516	0	1	12475000	+		42402	29046	29329	29380	47685;47686	47685					0.11308733942325944
LLAVVVGATHL	11	Unmodified	_LLAVVVGATHL_					0	0	0		ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.84033203125	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	0.96716	1	12740	12740		44.117	9.9443	1	11254000			42403	8083	29330	29381	47687	47687					0.12811168299458586
LLAVVVGATHL	11	Unmodified	_LLAVVVGATHL_					0	0	0		ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8402709960938	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	0.87162	1	12675	12675		53.351	10.877	1	10488000			42404	8083	29330	29381	47688	47688					0.12811168299458586
LLAWAAPL	8	Unmodified	_LLAWAAPL_					0	0	0		ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENST00000565793.5_1_15:79069566-79092863:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.26617431640625	2	427.760364	853.506175	-0.30177	-0.00012909	3.2765	0.0014016	2.9747	0.0012725	427.7613557894295	43.454	0.35596	43.217	43.099	43.455	-0.23737					12	9	2	0	0	0	0.027866	1	3990	3990		54.895	26.64	1	69180			42405	16929	29331	29382	47689	47689					0.0735619559936822
LLAWAAPL	8	Unmodified	_LLAWAAPL_					0	0	0		ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENST00000565793.5_1_15:79069566-79092863:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.760364	853.506175	-0.49476	-0.00021164	-2.4643	-0.0010541	-2.959	-0.0012658	427.7613389440654	43.485	0.21214	43.259	43.097	43.31	-0.22597	0.02099	-0.00025955	NaN	54.895	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84743			42406	16929	29331	29382							0.0735619559936822
LLAWAEKKA	9	Unmodified	_LLAWAEKKA_					0	0	0		ENST00000401715.2_1_6:10118966-10119482:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF;ENST00000437757.1_9:45949416-45949632:+|nuORF	ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENST00000401715.2_1_6:10118966-10119482:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7611083984375	2	515.30821	1028.60187	-0.47285	-0.00024366	-0.84212	-0.00043395	-1.315	-0.00067761	515.3077599278629	70.903	0.76948	70.913	70.55	71.319	0.010735					38	18	4	0	0	0	0.024323	1	8483	8483		44.117	1.7207	1	766940			42407	13674	29332	29383	47690	47690					0.08870923719609891
LLAWLKRH	8	Unmodified	_LLAWLKRH_					0	0	0			REV__ENST00000395879.5_2_7:43680244-43687232:-|nuORF	REV__ENST00000395879.5_2_7:43680244-43687232:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8216552734375	2	518.824361	1035.63417	-1.2479	-0.00064742	0.49634	0.00025751	-0.75152	-0.00038991	518.8245386134616	80.611	1.3796	80.632	80.316	81.696	0.021439					51	33	2	0	0	0	0.027866	1	10097	10097		57.453	6.1172	1	1177100	+		42408	31719	29333	29384	47691	47691					0.11777755913271903
LLAWSLAIP	9	Unmodified	_LLAWSLAIP_					0	0	0			REV__ENST00000403491.7_1_1:61923769-61923901:+|nuORF	REV__ENST00000403491.7_1_1:61923769-61923901:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2985534667969	2	492.299853	982.585153	-0.57193	-0.00028156	-3.5549	-0.0017501	-4.1268	-0.0020316	492.2979634668604	60.679	1.2712	60.465	60.04	61.311	-0.21339					111	33	6	0	0	0	0.15889	1	6942	6942		97.473	17.76	1	5328000	+		42409	31891	29334	29385	47692	47692					0.09316422833637716
LLAWTGTAEM	10	Unmodified	_LLAWTGTAEM_					0	0	0			REV__ENSG00000167600|ENST00000310054|CYP2S1	REV__ENSG00000167600|ENST00000310054|CYP2S1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.7769165039062	2	546.773342	1091.53213	-0.51387	-0.00028097	3.6123	0.0019751	3.0984	0.0016941	546.7752427870461	76.733	0.88537	76.747	76.053	76.939	0.013496					31	21	2	0	0	0	0.91051	1	9386	9386		53.351	2.016	1	400120	+		42410	26159	29335	29386	47693	47693					-0.009973230113246245
LLAWTLMGSD	10	Unmodified	_LLAWTLMGSD_					0	0	0		ENSG00000181017|ENST00000641377|OR56B2P;nc|ENSG00000181017|Q8NGI1|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3035888671875	2	553.781167	1105.54778	-0.63488	-0.00035159	-0.58538	-0.00032417	-1.2203	-0.00067576	553.7808666236137	92.201	1.0649	92.201	91.816	92.881	0					50	25	3	0	0	0	0.03519	1	11754	11754		26.693	0	1	918810			42411	9017	29336	29387	47694	47694					-0.0007703649425820913
LLAWTPLPKVK	11	Unmodified	_LLAWTPLPKVK_					0	0	0			REV__ENST00000472045.1_1_5:131821325-131821457:-|nuORF	REV__ENST00000472045.1_1_5:131821325-131821457:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5930480957031	3	422.604186	1264.79073	-0.06485	-2.7406E-05	-1.3624	-0.00057576	-1.4273	-0.00060317	422.60338526051675	50.429	0.46104	50.278	50.099	50.56	-0.15075					15	13	2	0	0	0	0.024735	1	5275	5275		27.644	21.945	1	206210	+		42412	33196	29337	29388	47695	47695					0.16892576293048478
LLAWWEWDTKF	11	Unmodified	_LLAWWEWDTKF_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.90179443359375	3	498.918722	1493.73434	-1.2573	-0.00062728	-1.9987	-0.00099719	-3.256	-0.0016245	499.25179254767585	44.055	0.37159	43.836	43.634	44.006	-0.21938					13	9	2	0	0	0	0.024747	1	4077	4077		55.084	35.457	1	143550			42413	908;4176	29338	29389	47696	47696					0.007219036657261313
LLAYDYDLT	9	Unmodified	_LLAYDYDLT_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7947387695312	2	543.771322	1085.52809	-0.3463	-0.00018831	-2.1343	-0.0011606	-2.4806	-0.0013489	543.7696945514499	40.174	0.60477	40.174	39.843	40.448	0					28	16	3	0	0	0	0.024294	1	3491	3491		55.504	0	1	240120	+		42414	24474	29339	29390	47697	47697					-0.011250892333919182
LLAYIALALS	10	Unmodified	_LLAYIALALS_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3092651367188	2	524.326068	1046.63758	-0.033814	-1.7729E-05	-0.3742	-0.0001962	-0.40801	-0.00021393	524.3259281713173	74.224	0.427	73.965	73.817	74.244	-0.25887					13	9	2	0	0	0	0.03519	1	9049	9049		55.504	13.108	1	185570	+		42415	23141	29340	29391	47698	47698					0.11612961176592762
LLAYIALALS	10	Unmodified	_LLAYIALALS_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3092651367188	2	524.326068	1046.63758	-0.46959	-0.00024622	-0.24896	-0.00013054	-0.71855	-0.00037675	524.3258793287423	73.914	0.51851	73.924	73.793	74.312	0.0096512					16	11	2	0	0	0	0.03519	1	8966	8966		68.485	5.1784	1	228250	+		42416	23141	29340	29391	47699	47699					0.11612961176592762
LLAYRSKVD	9	Unmodified	_LLAYRSKVD_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2885131835938	2	532.808574	1063.60259	-0.55493	-0.00029567	0.25275	0.00013467	-0.30218	-0.000161	532.8090216695099	85.954	0.37383	85.909	85.616	85.99	-0.045105					13	8	2	0	0	0	0.024447	1	10741	10741		25.574	11.437	1	72549			42417	6201	29341	29392	47700	47700					0.07333718368658992
LLAYRSKVD	9	Unmodified	_LLAYRSKVD_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.808574	1063.60259	0.21351	0.00011376	-0.49671	-0.00026465	-0.2832	-0.00015089	532.808439186143	85.923	0.46536	85.923	85.748	86.214	0	0.0004849	-0.00097017	NaN	25.574	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68461			42418	6201	29341	29392							0.07333718368658992
LLAYRSKVD	9	Unmodified	_LLAYRSKVD_					0	0	0		nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENSG00000151445|ENST00000557658|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	nc|ENSG00000151445|Q9H9C1-2|VIPAS39	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.808574	1063.60259	-1.2526	-0.00066738	1.1793	0.00062835	-0.073264	-3.9036E-05	532.8092998918358	85.912	0.42162	85.936	85.737	86.159	0.023666	0.01324	0.00081582	NaN	25.574	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58643			42419	6201	29341	29392							0.07333718368658992
LLCCANSPLF	10	Unmodified	_LLCCANSPLF_					0	0	0			REV__ENST00000345365.10_1_17:33427675-33427975:-|nuORF	REV__ENST00000345365.10_1_17:33427675-33427975:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.76416015625	2	540.764463	1079.51437	-0.53455	-0.00028907	0.38071	0.00020587	-0.15384	-8.3192E-05	540.7645140691427	49.878	1.3574	49.727	49.33	50.687	-0.1512					105	38	3	0	0	0	0.98754	2	5150	5150;5176		47.657	3.2801	1	6169200	+		42420	30697	29342	29393	47701;47702	47701					-0.022203615378430186
LLCDAYMCMY	10	Unmodified	_LLCDAYMCMY_					0	0	0		ENSG00000083799|ENST00000427738|CYLD;nc|ENSG00000083799|Q9NQC7-2|CYLD	ENSG00000083799|ENST00000427738|CYLD	ENSG00000083799|ENST00000427738|CYLD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	613.2908935546875	2	613.241649	1224.46874	-1.0398	-0.00063763	-0.33611	-0.00020612	-1.3759	-0.00084375	613.2415735618877	61.008	0.34862	60.754	60.623	60.971	-0.25373					10	8	2	0	0	0	0.03519	1	6803	6803		53.351	0	1	134440			42421	1758	29343	29394	47703	47703					-0.13451091106730928
LLCDAYNEKL	10	Unmodified	_LLCDAYNEKL_					0	0	0			REV__nc|ENSG00000151892|P56159-2|GFRA1	REV__nc|ENSG00000151892|P56159-2|GFRA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	591.2987670898438	2	591.297181	1180.57981	-0.78003	-0.00046123	3.8435	0.0022727	3.0635	0.0018114	591.299369309404	27.471	0.76781	27.229	26.954	27.721	-0.24217					41	17	3	0	0	0	0.91678	1	1518	1518		52.937	3.4007	1	2107700	+		42422	24804	29344	29395	47704	47704					-0.0032566881113780255
LLCEALQPLL	10	Carbamidomethyl (C)	_LLC(Carbamidomethyl (C))EALQPLL_	LLC(1)EALQPLL		LLC(88)EALQPLL		0	1	0			REV__SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|1|1|sense	REV__SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|1|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	585.3310546875	2	585.333567	1168.65258	-1.5537	-0.00090945	-1.3294	-0.00077816	-2.8832	-0.0016876	585.332619554506	82.087	1.4359	82.087	81.83	83.266	0					97	33	4	0	0	0	0.50466	1	10248	10248		87.754	10.98	1	897200	+		42423	37619	29345	29396	47705	47705	487				0.07500084982302724
LLCFGIIFLI	10	Unmodified	_LLCFGIIFLI_					0	0	0		ENST00000550373.2_1_12:53937026-53937696:-|nuORF;nc|ENSG00000170653|P17544-5|ATF7	ENST00000550373.2_1_12:53937026-53937696:-|nuORF	ENST00000550373.2_1_12:53937026-53937696:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	577.2979736328125	2	576.348489	1150.68242	-1.1262	-0.00064907	-4.401	-0.0025365	-5.5272	-0.0031856	576.3456509996586	93.128	0.80673	93.128	92.751	93.558	0					37	18	3	0	0	0	0.03519	1	11813	11813		44.531	5.5096	1	156210			42424	16577	29346	29397	47706	47706					0.1131106871830525
LLCFGPLRI	9	Unmodified	_LLCFGPLRI_					0	0	0		ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.28759765625	2	516.307155	1030.59976	-0.14202	-7.3328E-05	3.5484	0.001832	3.4063	0.0017587	516.8098685027775	49.638	0.2282	49.486	49.33	49.558	-0.1512					6	5	2	0	0	0	0.024386	1	5121	5121		42.474	0	1	170440			42425	12561	29347	29398	47707	47707					0.08568171710135175
LLCFGPLRI	9	Unmodified	_LLCFGPLRI_					0	0	0		ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.307155	1030.59976	0.068915	3.5581E-05	10.762	0.0055565	10.831	0.005592	516.312706660945	49.857	0.52262	49.751	49.449	49.972	-0.10558	0.13231	0.00080623	NaN	12.207	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231020			42426	12561	29347	29398							0.08568171710135175
LLCFIFFWHGF	11	Unmodified	_LLCFIFFWHGF_					0	0	0			REV__ENST00000367506.9_1_1:185125904-185126051:-|nuORF	REV__ENST00000367506.9_1_1:185125904-185126051:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.280029296875	3	477.242372	1428.70529	-0.65752	-0.00031379	2.8768	0.0013729	2.2193	0.0010591	477.57747003699524	37.543	0.3558	37.334	37.153	37.509	-0.2092					14	8	3	0	0	0	0.024761	1	3006	3006		20.837	0	1	93850	+		42427	31022	29348	29399	47708	47708					0.008080878357532129
LLCFNWLT	8	Unmodified	_LLCFNWLT_					0	0	0			REV__ENST00000513439.5_1_5:7889238-7895910:+|nuORF	REV__ENST00000513439.5_1_5:7889238-7895910:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.79876708984375	2	505.262413	1008.51027	-0.98508	-0.00049772	3.7378	0.0018886	2.7527	0.0013909	505.2641539234584	81.027	0.71979	80.896	80.619	81.339	-0.13075					42	17	3	0	0	0	0.027866	1	10026	10026		44.531	0	1	1067300	+		42428	34046	29349	29400	47709	47709					0.00635917030751898
LLCIGCHLNS	10	Unmodified	_LLCIGCHLNS_					0	0	0			REV__ENST00000607868.1_1_4:111539283-111539958:-|nuORF	REV__ENST00000607868.1_1_4:111539283-111539958:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.76904296875	2	536.767537	1071.52052	-0.21374	-0.00011473	2.7697	0.0014867	2.556	0.001372	536.7690591095416	87.146	2.0835	87.146	86.343	88.426	0					53	16	4	0	0	0	0.65054	1	10937	10937		71.296	11.177	1	4369100	+		42429	35961	29350	29401	47710	47710					-0.012378433063076955
LLCIPLLVGK	10	Unmodified	_LLCIPLLVGK_					0	0	0		ENST00000239940.11_1_3:149683956-149684166:-|nuORF	ENST00000239940.11_1_3:149683956-149684166:-|nuORF	ENST00000239940.11_1_3:149683956-149684166:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3170166015625	2	534.846113	1067.67767	-1.104	-0.00059047	1.8555	0.0009924	0.75149	0.00040193	535.3486789687869	44.257	0.20726	44.152	43.996	44.203	-0.10468					8	5	2	0	0	0	0.03519	1	4111	4111		21.96	0	1	97852			42430	11277	29351	29402	47711	47711					0.1465418457553369
LLCIRSLDS	9	Unmodified	_LLCIRSLDS_					0	0	0		ENST00000479421.5_2_20:43531717-43535076:+|nuORF	ENST00000479421.5_2_20:43531717-43535076:+|nuORF	ENST00000479421.5_2_20:43531717-43535076:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.8056945800781	2	510.281334	1018.54812	-0.10747	-5.4839E-05	-1.3379	-0.00068272	-1.4454	-0.00073755	510.28093567097596	57.75	0.78048	57.56	57.008	57.789	-0.19017					42	20	4	0	0	0	0.024535	1	6337	6337		33.516	15.191	1	467790			42431	15171	29352	29403	47712	47712					0.039583832255971174
LLCIRSLDS	9	Unmodified	_LLCIRSLDS_					0	0	0		ENST00000479421.5_2_20:43531717-43535076:+|nuORF	ENST00000479421.5_2_20:43531717-43535076:+|nuORF	ENST00000479421.5_2_20:43531717-43535076:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.281334	1018.54812	-0.48265	-0.00024629	-3.729	-0.0019028	-4.2117	-0.0021491	510.2796332461062	57.805	0.35616	57.627	57.358	57.714	-0.17776	0.01304	-0.00082894	NaN	25.45	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498320			42432	15171	29352	29403							0.039583832255971174
LLCIRSLDS	9	Unmodified	_LLCIRSLDS_					0	0	0		ENST00000479421.5_2_20:43531717-43535076:+|nuORF	ENST00000479421.5_2_20:43531717-43535076:+|nuORF	ENST00000479421.5_2_20:43531717-43535076:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.281334	1018.54812	-0.49856	-0.0002544	-3.0069	-0.0015344	-3.5054	-0.0017888	510.27967387813527	57.889	0.31599	57.655	57.386	57.702	-0.23363	0.041143	-9.196E-05	NaN	25.45	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465350			42433	15171	29352	29403							0.039583832255971174
LLCIVGEGLS	10	Unmodified	_LLCIVGEGLS_					0	0	0		ENST00000244745.3_2_6:21594235-21594328:+|nuORF	ENST00000244745.3_2_6:21594235-21594328:+|nuORF	ENST00000244745.3_2_6:21594235-21594328:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.8138427734375	2	502.27826	1002.54197	0.74083	0.0003721	-1.861	-0.00093475	-1.1202	-0.00056265	502.2771039044803	96.365	0.76556	96.242	95.941	96.706	-0.12305					44	17	4	0	0	0	0.03519	1	11944	11944		45.952	15.634	1	750770			42434	11304	29353	29404	47713	47713					0.040798649940711584
LLCKIPPLSP	10	Unmodified	_LLCKIPPLSP_					0	0	0			REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.28564453125	2	540.827921	1079.64129	-0.79106	-0.00042783	3.9944	0.0021603	3.2034	0.0017325	540.8298828519381	22.343	0.51893	22.141	21.903	22.421	-0.20199					20	10	3	0	0	0	0.03519	1	780	780		34.173	12.213	1	61521	+		42435	30559	29354	29405	47714	47714					0.1046530767882814
LLCKIPPLSP	10	Unmodified	_LLCKIPPLSP_					0	0	0			REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.827921	1079.64129	0.016745	9.0563E-06	2.9688	0.0016056	2.9856	0.0016147	540.8293336238784	22.224	0.37503	22.035	21.816	22.191	-0.18894	-0.063023	-0.00065304	NaN	34.173	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80675	+		42436	30559	29354	29405							0.1046530767882814
LLCKIPPLSP	10	Unmodified	_LLCKIPPLSP_					0	0	0			REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	REV__ENST00000337231.5_1_17:73001140-73001404:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.827921	1079.64129	-0.85278	-0.00046121	4.0537	0.0021923	3.2009	0.0017311	540.8298725987631	22.304	0.32868	22.118	21.952	22.281	-0.18539	0.020319	0.00052042	NaN	34.173	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91716	+		42437	30559	29354	29405							0.1046530767882814
LLCKKLFI	8	Unmodified	_LLCKKLFI_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.31439208984375	2	489.314449	976.614345	0.036112	1.767E-05	-1.1945	-0.00058451	-1.1584	-0.00056684	489.3137714988226	94.248	0.94348	94.248	93.888	94.831	0					66	22	4	0	0	0	1.0574	1	11987	11987		14.664	5.8418	1	1893000	+		42438	24021	29355	29406	47715	47715					0.1251024385827577
LLCKKLFI	8	Unmodified	_LLCKKLFI_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.3136901855469	2	489.314449	976.614345	-0.27597	-0.00013504	-0.79859	-0.00039076	-1.0746	-0.0005258	489.3139393052219	94.212	1.04	94.211	93.87	94.91	-0.00023651					80	24	5	0	0	0	1.0572	1	11952	11952		28.254	1.4582	1	2097800	+		42439	24021	29355	29406	47716	47716					0.1251024385827577
LLCKKLFI	8	Unmodified	_LLCKKLFI_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.3141784667969	2	489.314449	976.614345	0.44356	0.00021704	-1.5098	-0.00073878	-1.0663	-0.00052174	489.31359152290486	94.352	0.88556	94.23	93.842	94.727	-0.12215					55	20	4	0	0	0	1.0574	1	11634	11634		14.664	5.8418	1	1081100	+		42440	24021	29355	29406	47717	47717					0.1251024385827577
LLCKKLFI	8	Unmodified	_LLCKKLFI_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.3140869140625	2	489.314449	976.614345	0.10783	5.2763E-05	-1.242	-0.00060773	-1.1342	-0.00055497	489.3136970750936	94.352	1.0606	94.204	93.869	94.929	-0.14771					55	24	3	0	0	0	1.0574	1	11613	11613		21.702	6.0661	1	908630	+		42441	24021	29355	29406	47718	47718					0.1251024385827577
LLCKKLFI	8	Unmodified	_LLCKKLFI_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	489.314449	976.614345	-0.85843	-0.00042004	-0.29385	-0.00014378	-1.1523	-0.00056382	489.3142004915776	94.225	0.85927	94.231	93.89	94.75	0.0059891	0.0073872	0.00051213	NaN	28.254	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1745200	+		42442	24021	29355	29406							0.1251024385827577
LLCKKLFI	8	Unmodified	_LLCKKLFI_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	489.314449	976.614345	-1.0508	-0.00051419	-0.15148	-7.4122E-05	-1.2023	-0.00058831	489.3142275858638	94.356	1.1901	94.218	93.834	95.024	-0.13779	-0.0058709	0.00065146	NaN	28.254	78	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1637300	+		42443	24021	29355	29406							0.1251024385827577
LLCLALYF	8	Unmodified	_LLCLALYF_					0	0	0			REV__nc|ENSG00000017427|P05019-4|IGF1	REV__nc|ENSG00000017427|P05019-4|IGF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.2694091796875	2	478.269707	954.524861	0.84531	0.00040428	-0.72189	-0.00034526	0.12341	5.9024E-05	478.2693143749098	101.27	0.55231	101.14	100.86	101.41	-0.13156					27	11	3	0	0	0	1.0241	1	12564	12564		33.493	0	1	433000	+		42444	36438	29356	29407	47719	47719					0.045779891789152316
LLCLAMWPA	9	Unmodified	_LLCLAMWPA_					0	0	0			REV__GPR153|p.V282L|1|0.43|ENSG00000158292|chr1:6251473-6251473|C/A|missense_variant	REV__GPR153|p.V282L|1|0.43|ENSG00000158292|chr1:6251473-6251473|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.26806640625	2	509.266642	1016.51873	-1.0672	-0.00054347	3.4782	0.0017713	2.411	0.0012278	509.2682614222805	61.983	0.69149	61.983	61.492	62.183	0					57	18	6	0	0	0	0.65391	1	7203	7203		49.211	4.6797	1	5651600	+		42445	36080	29357	29408	47720	47720					0.011131476757441305
LLCLFQLPS	9	Unmodified	_LLCLFQLPS_					0	0	0		ENST00000262053.7_1_12:51203261-51207867:+|nuORF	ENST00000262053.7_1_12:51203261-51207867:+|nuORF	ENST00000262053.7_1_12:51203261-51207867:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3236083984375	2	517.291171	1032.56779	0.68696	0.00035536	-2.2454	-0.0011615	-1.5584	-0.00080615	517.2867061022981	63.646	0.39998	63.646	63.41	63.81	0					20	10	3	0	0	0	0.023007	1	7475	7475		87.754	4.4671	1	155140			42446	11485	29358	29409	47721	47721					0.05280759236347876
LLCLGITALV	10	Unmodified	_LLCLGITALV_					0	0	0		nc|ENSG00000135472|Q9BWQ8-2|FAIM2;ENSG00000135472|ENST00000320634|FAIM2	nc|ENSG00000135472|Q9BWQ8-2|FAIM2	nc|ENSG00000135472|Q9BWQ8-2|FAIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2944641113281	2	508.314646	1014.61474	-0.51156	-0.00026003	-0.69763	-0.00035462	-1.2092	-0.00061465	508.8149059104709	94.356	0.54073	94.362	94.209	94.75	0.0059814					15	12	2	0	0	0	0.03519	1	11951	11951		40.573	0	1	46059			42447	4900	29359	29410	47722	47722					0.10801618787479583
LLCLLLINV	9	Unmodified	_LLCLLLINV_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|81|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|81|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|81|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.82373046875	2	507.325014	1012.63547	-0.61368	-0.00031133	2.9766	0.0015101	2.3629	0.0011988	507.3264613307488	81.254	2.0224	81.254	80.899	82.922	0					83	48	2	0	0	0	0.024386	1	10152	10152		25.45	0	1	592810			42448	17815	29360	29411	47723	47723					0.1296620916715483
LLCLLLVAK	9	Unmodified	_LLCLLLVAK_					0	0	0			REV__ENST00000434555.6_1_1:44446805-44447499:+|nuORF	REV__ENST00000434555.6_1_1:44446805-44447499:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3162841796875	2	493.327556	984.64056	0.4467	0.00022037	3.2796	0.0016179	3.7263	0.0018383	493.3290664040318	18.379	0.74051	18.223	18.002	18.742	-0.15637					35	14	4	0	0	0	0.024541	1	312	312		12.959	0	1	651440	+		42449	22343	29361	29412	47724	47724					0.14762513029768343
LLCLLLVAK	9	Unmodified	_LLCLLLVAK_					0	0	0			REV__ENST00000434555.6_1_1:44446805-44447499:+|nuORF	REV__ENST00000434555.6_1_1:44446805-44447499:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.287353515625	2	493.327556	984.64056	0.34398	0.0001697	-2.0943	-0.0010332	-1.7504	-0.0008635	493.32567589990475	22.464	0.32447	22.262	22.097	22.421	-0.20199					12	6	2	0	0	0	0.024541	1	789	789		17.365	4.4058	1	30051	+		42450	22343	29361	29412	47725	47725					0.14762513029768343
LLCLRWSL	8	Unmodified	_LLCLRWSL_					0	0	0		ENST00000564774.5_1_16:84214522-84215086:-|nuORF	ENST00000564774.5_1_16:84214522-84215086:-|nuORF	ENST00000564774.5_1_16:84214522-84215086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78240966796875	2	502.291505	1002.56846	-0.78404	-0.00039382	1.5453	0.00077617	0.76122	0.00038236	502.29197349789337	44.593	0.5895	44.593	44.417	45.006	0					38	16	3	0	0	0	0.027866	1	4253	4253		47.916	0	1	2686000			42451	16904	29362	29413	47726	47726					0.06727598676059188
LLCLVLLSP	9	Unmodified	_LLCLVLLSP_					0	0	0		ENST00000556730.1_1_14:95047745-95056676:+|nuORF;ENSG00000188488|ENST00000329597|SERPINA5	ENST00000556730.1_1_14:95047745-95056676:+|nuORF	ENST00000556730.1_1_14:95047745-95056676:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.80584716796875	2	485.803914	969.593275	-0.14106	-6.8526E-05	3.6443	0.0017704	3.5033	0.0017019	485.80556673210566	34.284	1.1141	34.279	33.988	35.102	-0.0045624					66	28	4	0	0	0	0.36105	1	2536	2536		68.485	7.5128	1	4371900			42452	9724	29363	29414	47727	47727					0.10726233758782655
LLCLVLLSP	9	Unmodified	_LLCLVLLSP_					0	0	0		ENST00000556730.1_1_14:95047745-95056676:+|nuORF;ENSG00000188488|ENST00000329597|SERPINA5	ENST00000556730.1_1_14:95047745-95056676:+|nuORF	ENST00000556730.1_1_14:95047745-95056676:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	485.803914	969.593275	-1.2571	-0.00061069	4.883	0.0023722	3.6259	0.0017615	485.8061720813172	34.337	0.67546	34.387	34.047	34.723	0.050255	0.00059638	0.00046534	NaN	68.485	51	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3636300			42453	9724	29363	29414							0.10726233758782655
LLCLWSECGPG	11	Unmodified	_LLCLWSECGPG_					0	0	0			REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.2634887695312	2	589.272652	1176.53075	-0.6694	-0.00039446	-1.659	-0.0009776	-2.3284	-0.0013721	589.270923727979	52.663	0.87407	52.474	52.106	52.981	-0.18981					29	21	2	0	0	0	0.024738	1	5532	5532		42.396	8.2236	1	187470	+		42454	33441	29364	29415	47728	47728					-0.05045280371723493
LLCLWSECGPG	11	Unmodified	_LLCLWSECGPG_					0	0	0			REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.272652	1176.53075	-0.74389	-0.00043835	0.68081	0.00040118	-0.06308	-3.7171E-05	589.2729381646864	52.596	0.43761	52.469	52.234	52.672	-0.12705	-0.072195	0.00083366	NaN	26.693	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220170	+		42455	33441	29364	29415							-0.05045280371723493
LLCLWSECGPG	11	Unmodified	_LLCLWSECGPG_					0	0	0			REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	589.272652	1176.53075	-0.20257	-0.00011937	-1.5341	-0.00090403	-1.7367	-0.0010234	589.2713774579962	52.939	0.40055	52.68	52.443	52.843	-0.25838	0.13945	-0.0017768	NaN	26.693	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232000	+		42456	33441	29364	29415							-0.05045280371723493
LLCQGKPIN	9	Unmodified	_LLCQGKPIN_					0	0	0			REV__ENST00000370713.5_1_1:82417659-82417722:+|nuORF	REV__ENST00000370713.5_1_1:82417659-82417722:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.8135986328125	2	493.278595	984.542637	-0.11984	-5.9115E-05	0.25894	0.00012773	0.1391	6.8614E-05	493.27857683126496	53.479	0.5388	53.281	53.049	53.588	-0.19739					23	14	2	0	0	0	0.023355	1	5634	5634		55.504	16.698	1	247270	+		42457	31136	29365	29416	47729	47729					0.04974704433766419
LLCQGKPIN	9	Unmodified	_LLCQGKPIN_					0	0	0			REV__ENST00000370713.5_1_1:82417659-82417722:+|nuORF	REV__ENST00000370713.5_1_1:82417659-82417722:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.278595	984.542637	-0.45489	-0.00022439	-0.035484	-1.7503E-05	-0.49037	-0.00024189	493.2784545861297	53.362	0.48942	53.235	52.913	53.402	-0.12705	-0.023187	-0.00014514	NaN	55.504	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322840	+		42458	31136	29365	29416							0.04974704433766419
LLCQNRKN	8	Unmodified	_LLCQNRKN_					0	0	0			REV__ENST00000553932.5_1_14:39308236-39359955:-|nuORF	REV__ENST00000553932.5_1_14:39308236-39359955:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.77947998046875	2	494.771468	987.528384	-0.27658	-0.00013684	4.2856	0.0021204	4.0091	0.0019836	494.7742384029219	49.855	0.26938	49.929	49.84	50.11	0.074196					12	7	2	0	0	0	0.027866	1	5101	5101		25.45	5.4534	1	191850	+		42459	34977	29366	29417	47730	47730					0.03412052005478472
LLCQPHSH	8	Unmodified	_LLCQPHSH_					0	0	0		ENSG00000050165|ENST00000683431|DKK3	ENSG00000050165|ENST00000683431|DKK3	ENSG00000050165|ENST00000683431|DKK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.3057556152344	2	467.731812	933.449071	0.2755	0.00012886	-1.3121	-0.00061369	-1.0366	-0.00048483	467.73113210229883	61.957	1.2713	62.02	60.781	62.052	0.062767					42	33	2	0	0	0	0.027866	1	7076	7076		38.806	0	1	318660			42460	1138	29367	29418	47731	47731					-0.02031594948653037
LLCRASYCL	9	Unmodified	_LLCRASYCL_					0	0	0			REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8109130859375	2	521.26463	1040.51471	-0.13244	-6.9035E-05	2.6697	0.0013916	2.5373	0.0013226	521.2662177789234	83.496	0.81054	83.406	82.915	83.725	-0.090454					23	18	2	0	0	0	0.024487	1	10386	10386		31.955	1.4512	1	112210	+		42461	33364	29368	29419	47732	47732					-0.003929418179723143
LLCRRHRRR	9	Unmodified	_LLCRRHRRR_					0	0	0		ENST00000330070.5_1_17:46621981-46622053:-|nuORF	ENST00000330070.5_1_17:46621981-46622053:-|nuORF	ENST00000330070.5_1_17:46621981-46622053:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.25048828125	3	422.591391	1264.75234	0.080428	3.3988E-05	2.6648	0.0011261	2.7452	0.0011601	422.5924833153993	53.73	0.78951	53.533	52.86	53.65	-0.19739					32	21	2	0	0	0	0.024541	1	5593	5593		13.454	0	1	172810			42462	12325	29369	29420	47733	47733					0.1305580495011327
LLCRTLAHL	9	Unmodified	_LLCRTLAHL_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000467558.5_1_7:2580597-2582974:-|nuORF;ENST00000493232.5_1_7:2580815-2581753:-|nuORF;ENST00000469750.5_1_7:2580597-2582612:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3018188476562	2	520.307687	1038.60082	-0.73954	-0.00038479	1.0337	0.00053783	0.29413	0.00015304	520.8084456299755	60.842	0.82996	60.629	60.157	60.987	-0.21339					31	21	2	0	0	0	0.024381	1	7021	7021		55.504	3.205	1	236780			42463	2747	29370	29421	47734	47734					0.0830638607903893
LLCSAAEILL	10	Unmodified	_LLCSAAEILL_					0	0	0		ENST00000406733.1_1_22:47170095-47170131:+|nuORF	ENST00000406733.1_1_22:47170095-47170131:+|nuORF	ENST00000406733.1_1_22:47170095-47170131:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3040771484375	2	523.301736	1044.58892	0.26856	0.00014054	3.4907	0.0018267	3.7593	0.0019672	523.303622742998	99.956	1.0415	99.951	99.477	100.52	-0.0050812					58	26	4	0	0	0	1.0665	1	12690	12690		37.159	3.2375	1	1507600			42464	13736	29371	29422	47735	47735					0.06840724545213561
LLCSSDLAL	9	Unmodified	_LLCSSDLAL_					0	0	0			REV__ENSG00000068697|ENST00000175091|LAPTM4A	REV__ENSG00000068697|ENST00000175091|LAPTM4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7491149902344	2	467.749336	933.484119	-0.075421	-3.5278E-05	0.49971	0.00023374	0.42429	0.00019846	467.74940801294713	69.372	0.97742	69.372	68.938	69.915	0					64	24	4	0	0	0	0.20304	1	8360	8360		88.643	0	1	1326600	+		42465	20384	29372	29423	47736	47736					0.014716030686258819
LLCSSDLAL	9	Unmodified	_LLCSSDLAL_					0	0	0			REV__ENSG00000068697|ENST00000175091|LAPTM4A	REV__ENSG00000068697|ENST00000175091|LAPTM4A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	467.749336	933.484119	-0.32029	-0.00014981	0.61533	0.00028782	0.29504	0.000138	467.7493035940131	69.568	0.6193	69.346	69.103	69.722	-0.22245	-0.032155	0.00057382	NaN	88.643	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137270	+		42466	20384	29372	29423							0.014716030686258819
LLCVGFQTV	9	Carbamidomethyl (C)	_LLC(Carbamidomethyl (C))VGFQTV_	LLC(1)VGFQTV		LLC(59)VGFQTV		0	1	0		ENST00000523427.1_1_8:128864343-128902860:+|nuORF	ENST00000523427.1_1_8:128864343-128902860:+|nuORF	ENST00000523427.1_1_8:128864343-128902860:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.2794189453125	2	518.778428	1035.5423	-0.4777	-0.00024782	-0.91014	-0.00047216	-1.3878	-0.00071998	519.2790776020206	62.108	0.68549	61.881	61.534	62.219	-0.22663					65	18	5	0	0	0	0.50848	1	7165	7165		58.782	7.4465	1	5605500			42467	16043	29373	29424	47737	47737	217				0.02595284713925139
LLCVPLAHNI	10	Unmodified	_LLCVPLAHNI_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7747802734375	2	546.815344	1091.61614	-0.27288	-0.00014922	-2.2422	-0.001226	-2.515	-0.0013753	546.8137677174562	33.194	0.67368	32.994	32.73	33.404	-0.20019					20	16	2	0	0	0	0.03519	1	2382	2382		16.473	3.0191	1	89453			42468	1042	29374	29425	47738	47738					0.07399252876257378
LLDAAPLL	8	Unmodified	_LLDAAPLL_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2557373046875	2	413.257654	824.500755	0.61002	0.0002521	-2.7264	-0.0011267	-2.1164	-0.0008746	413.2565531797293	96.577	0.61254	96.44	96.222	96.835	-0.13671					33	13	4	0	0	0	0.98906	1	11938	11938		39.021	0	1	246640	+		42469	21403	29375	29426	47739	47739					0.08148472016898722
LLDAMRQQLL	10	Unmodified	_LLDAMRQQLL_					0	0	0			REV__RNF123|p.H1014R|1|0.3|ENSG00000164068|chr3:49715605-49715605|A/G|missense_variant	REV__RNF123|p.H1014R|1|0.3|ENSG00000164068|chr3:49715605-49715605|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.88616943359375	3	400.897152	1199.66963	1.0513	0.00042148	3.0978	0.0012419	4.1491	0.0016634	400.8981449308161	55.025	0.55783	54.794	54.601	55.159	-0.23087					35	15	3	0	0	0	0.03519	1	5866	5866		44.377	20.999	1	1269100	+		42470	37443	29376	29427	47740	47740					0.0777800558812487
LLDDCIFNM	9	Unmodified	_LLDDCIFNM_					0	0	0		nc|ENSG00000120669|Q9NX45-3|SOHLH2;nc|ENSG00000120669|Q9NX45-2|SOHLH2;ENSG00000120669|ENST00000379881|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2449951171875	2	542.246103	1082.47765	-0.30784	-0.00016693	0.52325	0.00028373	0.2154	0.0001168	542.2461981630324	89.668	0.74364	89.646	89.367	90.111	-0.021645					38	17	3	0	0	0	0.4752	1	11287	11287		60.972	2.19	1	902730			42471	18216	29377	29428	47741	47741					-0.060286581543778084
LLDDFLLTY	9	Unmodified	_LLDDFLLTY_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.79736328125	2	556.79734	1111.58013	0.46249	0.00025751	-0.098227	-5.4692E-05	0.36426	0.00020282	556.7971057712874	100.48	1.4358	100.35	100.1	101.54	-0.13364					61	36	4	0	0	0	0.013492	5	12463	12439;12441;12463;12475;12488		177.71	66.059	1	1447600			42472	4997	29378	29429	47742;47743;47744;47745;47746	47744					0.028800741803934216
LLDDFLLTY	9	Unmodified	_LLDDFLLTY_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.7975463867188	2	556.79734	1111.58013	0.59512	0.00033136	-0.23604	-0.00013143	0.35907	0.00019993	556.7970561487042	100.46	1.1405	100.33	100.1	101.24	-0.12504					58	32	4	0	0	0	0.013805	4	12462	12452;12462;12474;12485		193.98	65.051	1	1299300			42473	4997	29378	29429	47747;47748;47749;47750	47748					0.028800741803934216
LLDDFLLTY	9	Unmodified	_LLDDFLLTY_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.797119140625	2	556.79734	1111.58013	-0.085022	-4.734E-05	0.28045	0.00015615	0.19543	0.00010881	556.7973441309468	100.53	1.0825	100.36	100.16	101.24	-0.17088					51	28	4	0	0	0	0.014251	4	12456	12447;12456;12467;12478		211.23	63.539	1	1648100			42474	4997	29378	29429	47751;47752;47753;47754	47752					0.028800741803934216
LLDDTHWLY	9	Unmodified	_LLDDTHWLY_					0	0	0			REV__ENSG00000263528|ENST00000581977|IKBKE	REV__ENSG00000263528|ENST00000581977|IKBKE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.29052734375	2	588.290214	1174.56587	-0.048063	-2.8275E-05	0.081395	4.7884E-05	0.033332	1.9609E-05	588.2902216385961	85.339	1.3508	85.144	84.808	86.159	-0.19507					83	31	4	0	0	0	0.29104	1	10342	10342		76.847	2.8719	1	1864400	+		42475	29129	29379	29430	47755	47755					-0.0144257824788383
LLDEAIQAV	9	Unmodified	_LLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2750549316406	2	486.274032	970.533512	0.64607	0.00031417	-0.40099	-0.00019499	0.24508	0.00011918	486.2738468986523	70.805	0.99709	70.805	70.569	71.566	0					55	24	4	0	0	0	0.08613	1	8556	8556		115.46	13.858	1	2186500			42476	1401	29380	29431	47756	47756					0.0470663434908829
LLDEAIQAV	9	Unmodified	_LLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2745056152344	2	486.274032	970.533512	0.84383	0.00041033	-0.66323	-0.00032251	0.1806	8.7822E-05	486.27365130194875	71.156	0.869	70.867	70.633	71.502	-0.28858					52	21	4	0	0	0	0.11092	2	8578	8566;8578		108.09	17.311	1	2530600			42477	1401	29380	29431	47757;47758	47758					0.0470663434908829
LLDEAIQAV	9	Unmodified	_LLDEAIQAV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.27435302734375	2	486.274032	970.533512	-0.42912	-0.00020867	0.59127	0.00028752	0.16215	7.8849E-05	486.274270331763	70.865	0.87329	70.876	70.636	71.509	0.010735					49	21	4	0	0	0	0.096521	1	8496	8496		111.65	17.642	1	2499600			42478	1401	29380	29431	47759	47759					0.0470663434908829
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2955322265625	2	537.295496	1072.57644	-0.72556	-0.00038984	0.42672	0.00022928	-0.29884	-0.00016057	537.2956834278802	56.28	0.67887	56.28	55.999	56.678	0					48	18	4	0	0	0	0.056725	2	6256	6256;6265		126.24	41.082	1	9079500			42479	3219	29381	29432	47760;47761	47760					0.04305404406522939
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.29541015625	2	537.295496	1072.57644	-0.99417	-0.00053416	0.51255	0.00027539	-0.48163	-0.00025878	537.2957428324561	56.425	0.96225	56.261	55.914	56.876	-0.16431					53	20	4	0	0	0	0.048057	4	6265	6243;6253;6265;6278		129.42	43.492	1	8673000			42480	3219	29381	29432	47762;47763;47764;47765	47764					0.04305404406522939
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.29541015625	2	537.295496	1072.57644	-1.3285	-0.00071381	0.87015	0.00046753	-0.45838	-0.00024628	537.2959198698738	56.095	0.85803	56.193	55.894	56.752	0.097893					44	18	3	0	0	0	0.01896	3	6160	6148;6160;6174		150.36	48.761	1	7906800			42481	3219	29381	29432	47766;47767;47768	47767					0.04305404406522939
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.295166015625	2	537.295496	1072.57644	-0.5637	-0.00030287	0.51426	0.00027631	-0.049433	-2.656E-05	537.2956280670707	56.42	0.82865	56.264	55.933	56.761	-0.15656					52	20	4	0	0	0	0.16539	3	6101	6101;6113;6127		96.034	24.738	1	2427900			42482	3219	29381	29432	47769;47770;47771	47769					0.04305404406522939
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.294677734375	2	537.295496	1072.57644	-0.11054	-5.9391E-05	0.075527	4.058E-05	-0.03501	-1.8811E-05	537.2954407241854	56.481	0.73496	56.264	55.998	56.733	-0.21607					49	18	4	0	0	0	0.10464	2	6124	6112;6124		109.48	33.926	1	3055600			42483	3219	29381	29432	47772;47773	47773					0.04305404406522939
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.2949829101562	2	537.295496	1072.57644	-0.62342	-0.00033496	0.35771	0.0001922	-0.26571	-0.00014276	537.295598326244	56.515	0.78521	56.29	56.029	56.814	-0.2248					48	19	3	0	0	0	0.11727	3	6101	6101;6112;6126		106.68	37.837	1	3145200			42484	3219	29381	29432	47774;47775;47776	47774					0.04305404406522939
LLDEGAMLLY	10	Oxidation (M)	_LLDEGAM(Oxidation (M))LLY_		LLDEGAM(1)LLY		LLDEGAM(82)LLY	0	0	1		nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2938232421875	2	577.294107	1152.57366	0.56896	0.00032846	-0.65406	-0.00037759	-0.085099	-4.9127E-05	577.2934587649324	82.967	3.0817	82.747	81.701	84.783	-0.22015					149	71	3	0	0	0	0.55296	1	9976	9976		82.305	8.3303	1	613750			42485	7712	29382	29433	47777	47777		316			0.003478129573750266
LLDEGAMLLY	10	Oxidation (M)	_LLDEGAM(Oxidation (M))LLY_		LLDEGAM(1)LLY		LLDEGAM(82)LLY	0	0	1		nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.2949829101562	2	577.294107	1152.57366	-0.052927	-3.0554E-05	-0.011686	-6.7462E-06	-0.064613	-3.7301E-05	577.29379784767	82.92	3.149	82.739	81.647	84.796	-0.18079					146	73	3	0	0	0	0.55296	3	9990	9990;10024;10038		82.305	21.333	1	715690			42486	7712	29382	29433	47778;47779;47780	47778		316			0.003478129573750266
LLDEGAMLLY	10	Oxidation (M)	_LLDEGAM(Oxidation (M))LLY_		LLDEGAM(1)LLY		LLDEGAM(100)LLY	0	0	1		nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	nc|ENSG00000167634|Q8WX94|NLRP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2939453125	2	577.294107	1152.57366	-0.49656	-0.00028666	0.36026	0.00020798	-0.1363	-7.8687E-05	577.294036898395	83.001	2.5747	82.862	81.915	84.489	-0.13861					138	59	3	0	0	0	0.36026	5	9980	9969;9980;9992;10003;10030		102.77	39.467	1	659780			42487	7712	29382	29433	47781;47782;47783;47784;47785	47782		316			0.003478129573750266
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.7791137695312	2	563.780013	1125.54547	-0.91741	-0.00051722	0.21321	0.0001202	-0.7042	-0.00039702	563.7800162298171	44.342	0.75382	44.237	44.03	44.784	-0.10468					47	19	3	0	0	0	0.015527	1	4140	4140		193.98	99.972	1	3422100			42488	2116	29383	29434	47786	47786					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.7802734375	2	563.780013	1125.54547	-0.79564	-0.00044857	0.20367	0.00011483	-0.59197	-0.00033374	563.7799996640781	44.551	0.7893	44.307	44.045	44.835	-0.2444					47	20	3	0	0	0	0.01471	1	4157	4157		187.63	81.218	1	3704500			42489	2116	29383	29434	47787	47787					-0.012277489076950587
LLDEHHISY	9	Unmodified	_LLDEHHISY_					0	0	0		SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.7792358398438	2	563.780013	1125.54547	-1.1401	-0.00064277	0.43395	0.00024465	-0.70615	-0.00039811	563.780176446616	44.517	0.74967	44.298	44.073	44.823	-0.21939					47	19	3	0	0	0	0.013492	2	4164	4152;4164		177.71	81.517	1	3053900			42490	2116	29383	29434	47788;47789	47789					-0.012277489076950587
LLDEVQQVK	9	Unmodified	_LLDEVQQVK_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3012084960938	2	536.305864	1070.59717	-0.73991	-0.00039682	0.85215	0.00045701	0.11225	6.0198E-05	536.3059331989874	56.785	0.43312	56.785	56.535	56.968	0					19	12	2	0	0	0	0.024427	1	6329	6329		34.173	5.023	1	339950	+		42491	23691	29384	29435	47790	47790					0.06469994786198185
LLDFEKKKV	9	Unmodified	_LLDFEKKKV_					0	0	0		ENSG00000113361|ENST00000265071|CDH6;nc|ENSG00000113361|P55285-2|CDH6	ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3402709960938	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	0.97455	1	12637	12637		25.574	1.0549	1	13153000			42492	3285	29385	29436	47791	47791					0.11535748579603933
LLDFLPREG	9	Unmodified	_LLDFLPREG_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2785034179688	2	530.295299	1058.57605	0.33008	0.00017504	3.1212	0.0016552	3.4513	0.0018302	530.2967017617586	69.884	0.41068	69.591	69.467	69.878	-0.29292					12	9	2	0	0	0	0.024506	1	8390	8390		23.042	0	1	62797			42493	8695	29386	29437	47792	47792					0.04910029477309763
LLDHLTSIN	9	Unmodified	_LLDHLTSIN_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.30810546875	2	513.284931	1024.55531	-0.00053916	-2.7674E-07	1.0829	0.00055582	1.0823	0.00055554	513.28444009171	54.321	0.72248	54.174	53.855	54.577	-0.14723					30	19	3	0	0	0	0.024319	1	5944	5944		66.429	2.222	1	3568800	+		42494	26909	29387	29438	47793	47793					0.04401439097682669
LLDHLTSIN	9	Unmodified	_LLDHLTSIN_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.284931	1024.55531	-0.7018	-0.00036022	-0.84535	-0.0004339	-1.5471	-0.00079413	513.2843298721075	54.27	0.57181	54.134	53.897	54.469	-0.13617	-0.015711	7.6874E-05	NaN	96.19	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1257600	+		42495	26909	29387	29438							0.04401439097682669
LLDHLTSIN	9	Unmodified	_LLDHLTSIN_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.284931	1024.55531	-0.07655	-3.9292E-05	-1.2089	-0.00062053	-1.2855	-0.00065982	513.2840512492494	54.427	0.64331	54.182	53.98	54.623	-0.2453	0.031481	-0.00029638	NaN	96.19	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1434400	+		42496	26909	29387	29438							0.04401439097682669
LLDHLTSIN	9	Unmodified	_LLDHLTSIN_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.284931	1024.55531	0.41444	0.00021272	-1.6087	-0.0008257	-1.1942	-0.00061298	513.2839275439726	54.347	0.66125	54.15	53.922	54.583	-0.19739	-6.8042E-05	-0.00070672	NaN	96.19	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1089300	+		42497	26909	29387	29438							0.04401439097682669
LLDIARNAI	9	Unmodified	_LLDIARNAI_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.32122802734375	2	499.803291	997.59203	-0.26246	-0.00013118	0.1666	8.3265E-05	-0.095862	-4.7912E-05	499.8031535644057	25.796	0.56648	25.625	25.33	25.896	-0.17078					31	14	3	0	0	0	0.024344	1	1278	1278		45.972	3.5761	1	720770	+		42498	22118	29388	29439	47794	47794					0.09313735714226823
LLDIGSNHNG	10	Unmodified	_LLDIGSNHNG_					0	0	0			REV__nc|ENSG00000080822|Q9NY35-3|CLDND1	REV__nc|ENSG00000080822|Q9NY35-3|CLDND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7670288085938	2	520.261988	1038.50942	-0.45962	-0.00023912	-0.082981	-4.3172E-05	-0.5426	-0.00028229	520.2618713208313	22.784	0.96893	22.709	22.363	23.332	-0.075296					77	21	6	0	0	0	1.0508	1	803	803		39.253	0	1	5969800	+		42499	20664	29389	29440	47795	47795					-0.008292060845633387
LLDIYSTYW	9	Unmodified	_LLDIYSTYW_					0	0	0			REV__ENSG00000127580|ENST00000293883|WDR24	REV__ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	587.2952270507812	2	587.294965	1172.57538	-0.82882	-0.00048676	1.2112	0.00071133	0.38238	0.00022457	587.2956514141753	74.266	2.0461	74.007	73.701	75.747	-0.25887					171	51	5	0	0	0	0.67308	1	9093	9093		47.916	3.5384	1	53559000	+		42500	22940	29390	29441	47796	47796					-0.004008099623888484
LLDKHKRLAN	10	Unmodified	_LLDKHKRLAN_					0	0	0			REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.2477722167969	3	403.247173	1206.71969	0.86007	0.00034682	-1.2352	-0.00049809	-0.37512	-0.00015127	403.24679190087267	103.38	1.8075	103.25	102.9	104.71	-0.12724					103	45	4	0	0	0	1.1195	1	12880	12880		20.837	0.80668	1	2106700	+		42501	21445	29391	29442	47797	47797					0.12459876308275852
LLDKRLRSE	9	Unmodified	_LLDKRLRSE_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.8067016601562	2	565.33803	1128.66151	-1.538	-0.00086948	1.9438	0.0010989	0.40583	0.00022943	565.3389685951718	28.96	0.56446	28.96	28.696	29.26	0					28	13	3	0	0	0	0.024511	1	1724	1724		25.574	0	1	166780			42502	11022	29392	29443	47798	47798					0.10232194662989968
LLDKSTSL	8	Unmodified	_LLDKSTSL_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.7564697265625	2	438.755475	875.496398	0.35176	0.00015434	1.5078	0.00066154	1.8595	0.00081588	438.7560123278091	40.963	1.0971	40.963	40.728	41.825	0					68	30	4	0	0	0	0.94517	1	3651	3651		45.952	0	1	3675600	+		42503	28288	29393	29444	47799	47799					0.05366962803338993
LLDKSTSL	8	Unmodified	_LLDKSTSL_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.7566833496094	2	438.755475	875.496398	0.24096	0.00010572	1.4773	0.00064818	1.7183	0.0007539	438.75601774874855	41.154	0.84414	41.177	40.899	41.743	0.023006					54	23	3	0	0	0	0.845	1	3619	3619		55.504	0	1	2956400	+		42504	28288	29393	29444	47800	47800					0.05366962803338993
LLDKVRAFK	9	Unmodified	_LLDKVRAFK_					0	0	0			REV__ENSG00000197780|ENST00000338366|TAF13	REV__ENSG00000197780|ENST00000338366|TAF13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2830200195312	2	545.342584	1088.67061	0.21127	0.00011522	-1.019	-0.00055573	-0.80777	-0.00044051	545.3414995817405	51.032	0.29979	50.851	50.723	51.023	-0.18071					13	7	2	0	0	0	0.024506	1	5211	5211		38.806	15.764	1	228290	+		42505	28348	29394	29445	47801	47801					0.12982588019326613
LLDLFISSA	9	Unmodified	_LLDLFISSA_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.2589416503906	2	489.778951	977.543348	0.32905	0.00016116	-1.0449	-0.00051176	-0.71583	-0.0003506	489.7787341963382	98.73	0.82484	98.594	98.147	98.972	-0.13625					28	18	2	0	0	0	0.024506	1	12179	12179		30.504	5.0535	1	44993			42506	1596	29395	29446	47802	47802					0.05367822354469354
LLDLFISSA	9	Unmodified	_LLDLFISSA_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	489.778951	977.543348	0.19685	9.6414E-05	-1.266	-0.00062008	-1.0692	-0.00052366	489.77859215328084	98.573	0.64312	98.573	98.358	99.001	0	-0.012711	4.1292E-05	NaN	30.504	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84144			42507	1596	29395	29446							0.05367822354469354
LLDLFISSA	9	Unmodified	_LLDLFISSA_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.778951	977.543348	0.30922	0.00015145	-1.265	-0.00061959	-0.95581	-0.00046813	489.7785744307001	98.691	0.77004	98.687	98.307	99.077	-0.0038834	0.1018	4.2276E-05	NaN	30.504	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77704			42508	1596	29395	29446							0.05367822354469354
LLDLHFTLV	9	Unmodified	_LLDLHFTLV_					0	0	0			REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1	REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2468872070312	2	535.815867	1069.61718	-0.74754	-0.00040054	1.8966	0.0010162	1.149	0.00061567	535.8166506195614	70.249	1.0219	70.261	69.993	71.015	0.012421					53	26	3	0	0	0	0.024325	1	8405	8405		31.955	2.1133	1	1821700	+		42509	25342	29396	29447	47803	47803					0.08515790516798916
LLDLKEVCL	9	Unmodified	_LLDLKEVCL_					0	0	0			REV__nc|ENSG00000253868|Q96M78|FER1L6-AS2	REV__nc|ENSG00000253868|Q96M78|FER1L6-AS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3040771484375	2	523.301736	1044.58892	-0.20164	-0.00010552	4.1006	0.0021459	3.899	0.0020403	523.3037912633964	99.824	1.0285	99.834	99.446	100.47	0.010117					42	25	2	0	0	0	0.72875	1	12721	12721		44.117	3.5442	1	1714900	+		42510	37170	29397	29448	47804	47804					0.06840724545213561
LLDLKPELAAQ	11	Unmodified	_LLDLKPELAAQ_					0	0	0			REV__ENST00000582482.1_1_17:46058511-46058865:+|nuORF	REV__ENST00000582482.1_1_17:46058511-46058865:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8554077148438	2	605.855721	1209.69689	-0.22702	-0.00013754	0.035065	2.1245E-05	-0.19195	-0.00011629	605.8555419942754	82.066	1.3776	81.837	81.395	82.773	-0.2289					85	29	5	0	0	0	0.58492	1	9862	9862		70.816	0.41764	1	2615800	+		42511	21737	29398	29449	47805	47805					0.10042812400138246
LLDLLSELY	9	Unmodified	_LLDLLSELY_					0	0	0		ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3;nc|ENSG00000143624|Q68E01-3|INTS3	ENSG00000143624|ENST00000318967|INTS3	ENSG00000143624|ENST00000318967|INTS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.805908203125	2	539.805165	1077.59578	-0.43823	-0.00023656	1.2286	0.00066322	0.7904	0.00042666	539.805578651501	103.01	0.62447	102.88	102.75	103.38	-0.12783					20	14	2	0	0	0	0.29104	2	12837	12825;12837		76.847	34.372	1	211530			42512	5674	29399	29450	47806;47807	47807					0.060083606974330905
LLDLMIFLQL	10	Unmodified	_LLDLMIFLQL_					0	0	0		ENST00000301919.8_1_11:105878863-105879127:-|nuORF	ENST00000301919.8_1_11:105878863-105879127:-|nuORF	ENST00000301919.8_1_11:105878863-105879127:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.90899658203125	3	406.910399	1217.70937	-0.6897	-0.00028065	-3.9381	-0.0016025	-4.6278	-0.0018831	406.90872223770316	55.457	1.0348	55.241	55.004	56.038	-0.21551					81	28	4	0	0	0	0.86389	1	5959	5959		56.434	8.4743	1	3138700			42513	11940	29400	29451	47808	47808					0.1092213253882619
LLDLNDKIL	9	Unmodified	_LLDLNDKIL_					0	0	0		nc|ENSG00000155886|Q9UI40-2|SLC24A2;ENSG00000155886|ENST00000341998|SLC24A2	nc|ENSG00000155886|Q9UI40-2|SLC24A2	nc|ENSG00000155886|Q9UI40-2|SLC24A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.31884765625	2	528.818607	1055.62266	-0.37916	-0.00020051	0.87129	0.00046075	0.49213	0.00026025	528.818487726817	82.849	0.9071	82.709	82.303	83.21	-0.14014					36	20	2	0	0	0	0.43973	1	10005	10005		63.306	0	1	440730			42514	6494	29401	29452	47809	47809					0.09707469308614236
LLDLRQKV	8	Unmodified	_LLDLRQKV_					0	0	0		ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2872009277344	2	492.813659	983.612765	-0.082665	-4.0739E-05	0.5145	0.00025355	0.43184	0.00021282	492.81380124619	67.238	0.95452	67.262	66.942	67.897	0.023911					45	23	2	0	0	0	0.027866	1	8013	8013		31.53	0	1	1385600			42515	9811	29402	29453	47810	47810					0.12030326093895383
LLDLSRPII	9	Unmodified	_LLDLSRPII_					0	0	0			REV__ENSG00000111802|ENST00000378198|TDP2	REV__ENSG00000111802|ENST00000378198|TDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.32958984375	2	520.329142	1038.64373	-0.37675	-0.00019603	1.2977	0.00067525	0.92099	0.00047922	520.3300203658873	69.687	0.79145	69.687	69.202	69.993	0					45	19	3	0	0	0	0.4752	1	8417	8417		60.972	0	1	8390300	+		42516	21947	29403	29454	47811	47811					0.12595479408128085
LLDLSRPII	9	Unmodified	_LLDLSRPII_					0	0	0			REV__ENSG00000111802|ENST00000378198|TDP2	REV__ENSG00000111802|ENST00000378198|TDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3297119140625	2	520.329142	1038.64373	0.53391	0.00027781	0.27198	0.00014152	0.80589	0.00041933	520.3294514037375	70.026	0.72508	69.733	69.275	70	-0.29291					42	17	3	0	0	0	0.23085	1	8417	8417		84.916	0	1	7754200	+		42517	21947	29403	29454	47812	47812					0.12595479408128085
LLDLSSIAR	9	Unmodified	_LLDLSSIAR_					0	0	0			REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7826232910156	2	494.295299	986.576045	-0.26791	-0.00013242	3.0331	0.0014993	2.7652	0.0013668	494.29578288821773	46.832	0.19001	46.679	46.586	46.776	-0.15301					5	4	2	0	0	0	0.023635	1	4649	4649		47.657	0	1	36182	+		42518	37487	29404	29455	47813	47813					0.08222029477337855
LLDLSSIAR	9	Unmodified	_LLDLSSIAR_					0	0	0			REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	REV__SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7513427734375	2	494.295299	986.576045	-0.79073	-0.00039085	0.17327	8.5648E-05	-0.61746	-0.00030521	494.29533538109484	45.783	0.7193	45.581	45.325	46.044	-0.20226					55	19	4	0	0	0	0.024263	1	4366	4366		42.396	0	1	3133900	+		42519	37487	29404	29455	47814	47814					0.08222029477337855
LLDLYRQGL	9	Unmodified	_LLDLYRQGL_					0	0	0			REV__nc|ENSG00000186283|Q9H497-2|TOR3A	REV__nc|ENSG00000186283|Q9H497-2|TOR3A	MSMS	OPSCC_40_ClassI_Rep-2	5	545.8164672851562	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.35	1	107.21	106.71	107.71	-0.1346								0	0	0	0.61872	1	13329	13329		37.159	6.6555	1		+		42520	27843	29405	29456	47815	47815					0.07702004885709357
LLDMETTYS	9	Unmodified	_LLDMETTYS_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3424072265625	2	536.74699	1071.47943	-0.51932	-0.00027874	-1.7569	-0.00094301	-2.2762	-0.0012217	536.7458581144416	50.614	0.6641	50.465	50.162	50.826	-0.14916					38	19	3	0	0	0	0.024405	1	5301	5301		53.351	35.986	1	545520			42521	6757	29406	29457	47816	47816					-0.05345325864800543
LLDMIPQLV	9	Unmodified	_LLDMIPQLV_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.3048706054688	2	521.304278	1040.594	-0.60362	-0.00031467	2.6662	0.0013899	2.0626	0.0010752	521.3059271953067	47.129	1.791	47.129	46.587	48.378	0					117	51	5	0	0	0	0.4752	1	4741	4741		60.972	11.53	1	133990000	+		42522	23116	29407	29458	47817	47817					0.07533028407806341
LLDMLKFY	8	Unmodified	_LLDMLKFY_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.22900390625	2	521.785721	1041.55689	-0.58585	-0.00030569	0.41653	0.00021734	-0.16931	-8.8345E-05	521.786060702589	36.341	0.29517	36.135	35.987	36.282	-0.20518					10	7	2	0	0	0	0.027866	1	2821	2821		31.955	2.8053	1	145560			42523	961	29408	29459	47818	47818					0.03777356862065062
LLDMLKFY	8	Unmodified	_LLDMLKFY_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.785721	1041.55689	0.44953	0.00023456	-0.96858	-0.00050539	-0.51905	-0.00027083	521.7850339292914	36.301	0.34592	36.084	35.981	36.326	-0.21661	-0.02548	-0.00048817	NaN	50.025	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115640			42524	961	29408	29459							0.03777356862065062
LLDPGMLVNI	10	Unmodified	_LLDPGMLVNI_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8029174804688	2	542.807185	1083.59982	-0.67683	-0.00036739	1.2921	0.00070136	0.61527	0.00033397	542.8078001604058	101.61	1.0906	101.61	100.99	102.08	0					55	24	4	0	0	0	0.74632	1	13022	13022		64.207	3.8036	1	909900			42525	8741	29409	29460	47819	47819					0.06136126919500384
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.8663940429688	2	622.866089	1243.71762	1.1674	0.00072713	-1.2927	-0.00080519	-0.12531	-7.8052E-05	622.8651879236476	74.496	0.94374	74.496	74.172	75.116	0					60	22	4	0	0	0	0.14913	2	9115	9115;9133		104.42	40.89	1	1967400			42526	18202	29410	29461	47820;47821	47820					0.10551402779788077
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.8670654296875	2	622.866089	1243.71762	0.58813	0.00036633	-0.54135	-0.00033719	0.046779	2.9137E-05	622.8655663521847	74.728	0.86476	74.469	74.158	75.023	-0.25887					59	20	4	0	0	0	0.40024	2	9114	9114;9127		82.831	34.871	1	1882700			42527	18202	29410	29461	47822;47823	47822					0.10551402779788077
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.8662719726562	2	622.866089	1243.71762	-1.0515	-0.00065495	0.67032	0.00041752	-0.38118	-0.00023742	622.8664389793927	74.573	0.86717	74.583	74.224	75.091	0.0096512					45	19	3	0	0	0	0.082489	3	9055	9043;9055;9069		112.3	57.573	1	1851200			42528	18202	29410	29461	47824;47825;47826	47825					0.10551402779788077
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	622.866089	1243.71762	0.47609	0.00029654	-0.77843	-0.00048486	-0.30235	-0.00018832	622.8654688471644	74.716	0.58408	74.44	74.22	74.804	-0.27573	-0.021173	-0.00076558	NaN	112.3	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390050			42529	18202	29410	29461							0.10551402779788077
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	622.866089	1243.71762	-0.87036	-0.00054212	0.60802	0.00037871	-0.26234	-0.0001634	622.8664229794431	74.684	0.88496	74.421	73.889	74.774	-0.26326	-0.040738	0.00096157	NaN	112.3	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357640			42530	18202	29410	29461							0.10551402779788077
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	622.866089	1243.71762	0.57118	0.00035577	-0.88686	-0.0005524	-0.31568	-0.00019663	622.8654460995333	74.543	0.79294	74.36	73.889	74.682	-0.18278	-0.10168	-0.00090066	NaN	112.3	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401920			42531	18202	29410	29461							0.10551402779788077
LLDPRSLLD	9	Unmodified	_LLDPRSLLD_					0	0	0		ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3027954101562	2	521.300581	1040.58661	-0.74576	-0.00038877	0.5627	0.00029334	-0.18306	-9.5428E-05	521.3007347232244	60.95	0.74994	60.737	60.31	61.06	-0.21339					52	19	3	0	0	0	0.071379	2	6997	6997;7008		120.87	22.239	1	6106600			42532	14249	29411	29462	47827;47828	47827					0.06794012131740601
LLDPRSLLD	9	Unmodified	_LLDPRSLLD_					0	0	0		ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.302978515625	2	521.300581	1040.58661	-1.5643	-0.00081549	1.397	0.00072824	-0.16737	-8.7252E-05	521.3011782946406	60.612	0.96732	60.691	60.28	61.247	0.078884					67	25	4	0	0	0	0.1158	1	6898	6898		107.01	13.812	1	6281700			42533	14249	29411	29462	47829	47829					0.06794012131740601
LLDPRSLLD	9	Unmodified	_LLDPRSLLD_					0	0	0		ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7848510742188	2	521.300581	1040.58661	-0.68681	-0.00035803	3.4917	0.0018202	2.8049	0.0014622	521.301953686101	60.639	0.51823	60.463	60.156	60.674	-0.1761					20	12	2	0	0	0	0.024541	1	6782	6782		26.693	11.051	1	112060			42534	14249	29411	29462	47830	47830					0.06794012131740601
LLDPRSLLD	9	Unmodified	_LLDPRSLLD_					0	0	0		ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.300581	1040.58661	-0.53323	-0.00027797	3.4308	0.0017885	2.8976	0.0015105	521.3022533170915	60.696	0.51834	60.49	60.254	60.772	-0.20599	-0.11745	0.0020387	NaN	49.442	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141410			42535	14249	29411	29462							0.06794012131740601
LLDPRSLLD	9	Unmodified	_LLDPRSLLD_					0	0	0		ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	ENST00000434623.6_1_9:112811001-112898440:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.300581	1040.58661	-0.63557	-0.00033132	3.4736	0.0018108	2.8381	0.0014795	521.3022317313174	60.843	0.59697	60.589	60.294	60.891	-0.25373	-0.017931	0.0020833	NaN	49.442	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91959			42536	14249	29411	29462							0.06794012131740601
LLDPRSLLL	9	Unmodified	_LLDPRSLLL_					0	0	0			REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF	REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.330078125	2	520.329142	1038.64373	0.53391	0.00027781	0.27198	0.00014152	0.80589	0.00041933	520.3294514037375	70.026	0.72508	69.733	69.275	70	-0.29291					42	17	3	0	0	0	0.091713	2	8429	8406;8429		113.41	8.665	1	7754200	+		42537	31625	29412	29463	47831;47832	47832					0.12595479408128085
LLDPRSLLL	9	Unmodified	_LLDPRSLLL_					0	0	0			REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF	REV__ENST00000392914.3_1_12:102517666-102545686:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3299560546875	2	520.329142	1038.64373	-0.58303	-0.00030337	1.309	0.0006811	0.72595	0.00037773	520.3299963767871	69.806	0.86319	69.818	69.168	70.032	0.012421					45	21	3	0	0	0	0.077175	1	8328	8328		118.74	10.656	1	8178600	+		42538	31625	29412	29463	47833	47833					0.12595479408128085
LLDPSQKNLY	10	Unmodified	_LLDPSQKNLY_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627;ENST00000476676.1_1_19:12296653-12296758:+|nuORF;nc|ENSG00000214189|Q6ZQV5-2|ZNF788P;ENSG00000223547|ENST00000439326|ZNF844;ENST00000464860.1_1_19:12296590-12298813:+|nuORF;ENSG00000196646|ENST00000343979|ZNF136;ENSG00000132010|ENST00000334213|ZNF20;ENSG00000277462|ENST00000366503|ZNF670;ENSG00000257591|ENST00000439556|ZNF625;ENSG00000196418|ENST00000543802|ZNF124;nc|ENSG00000196418|Q15973-4|ZNF124;ENST00000543124.1_1_12:133624462-133624816:+|nuORF;ENST00000539098.5_1_12:133618053-133624816:+|nuORF;ENST00000480770.5_3_19:12241465-12247683:-|nuORF;nc|ENSG00000214189|Q6ZQV5|ZNF788P;nc|ENSG00000196418|Q15973-5|ZNF124;ENST00000478942.5_1_19:12246557-12251057:-|nuORF;ENSG00000198040|ENST00000539354|ZNF84;ENSG00000257446|ENST00000547628|ZNF878	ENSG00000198551|ENST00000361113|ZNF627;ENSG00000257446|ENST00000547628|ZNF878	ENSG00000198551|ENST00000361113|ZNF627	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.2947998046875	2	595.824421	1189.63429	-0.62938	-0.000375	0.56886	0.00033894	-0.060512	-3.6055E-05	595.8246577461731	53.332	0.77878	53.205	52.951	53.73	-0.12705					53	21	4	0	0	0	0.03519	1	5575	5575		58.23	27.726	1	1865000			42539	10147;10920	29413	29464	47834	47834					0.04705666331960856
LLDPSQKNLY	10	Unmodified	_LLDPSQKNLY_					0	0	0		ENSG00000198551|ENST00000361113|ZNF627;ENST00000476676.1_1_19:12296653-12296758:+|nuORF;nc|ENSG00000214189|Q6ZQV5-2|ZNF788P;ENSG00000223547|ENST00000439326|ZNF844;ENST00000464860.1_1_19:12296590-12298813:+|nuORF;ENSG00000196646|ENST00000343979|ZNF136;ENSG00000132010|ENST00000334213|ZNF20;ENSG00000277462|ENST00000366503|ZNF670;ENSG00000257591|ENST00000439556|ZNF625;ENSG00000196418|ENST00000543802|ZNF124;nc|ENSG00000196418|Q15973-4|ZNF124;ENST00000543124.1_1_12:133624462-133624816:+|nuORF;ENST00000539098.5_1_12:133618053-133624816:+|nuORF;ENST00000480770.5_3_19:12241465-12247683:-|nuORF;nc|ENSG00000214189|Q6ZQV5|ZNF788P;nc|ENSG00000196418|Q15973-5|ZNF124;ENST00000478942.5_1_19:12246557-12251057:-|nuORF;ENSG00000198040|ENST00000539354|ZNF84;ENSG00000257446|ENST00000547628|ZNF878	ENSG00000198551|ENST00000361113|ZNF627;ENSG00000257446|ENST00000547628|ZNF878	ENSG00000198551|ENST00000361113|ZNF627	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.29443359375	2	595.824421	1189.63429	-0.67362	-0.00040136	0.631	0.00037596	-0.042618	-2.5393E-05	595.8247144672238	53.572	0.63485	53.314	53.039	53.674	-0.25839					51	17	5	0	0	0	0.03519	1	5590	5590		42.864	19.822	1	2046000			42540	10147;10920	29413	29464	47835	47835					0.04705666331960856
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.78466796875	2	513.784567	1025.55458	-0.82105	-0.00042184	0.87008	0.00044703	0.049035	2.5193E-05	513.7849470972443	73.163	0.69148	73.163	72.825	73.516	0					56	17	5	0	0	0	0.040175	5	8913	8902;8913;8926;8939;8951		133.47	56.622	1	6307300			42541	9388	29414	29465	47836;47837;47838;47839;47840	47837					0.04282644448608153
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7844848632812	2	513.784567	1025.55458	-0.29119	-0.00014961	0.31476	0.00016172	0.02357	1.211E-05	513.7846615106254	73.518	0.76861	73.247	72.842	73.611	-0.27126					58	19	4	0	0	0	0.040175	4	8915	8915;8926;8943;8956		133.47	52.014	1	6271600			42542	9388	29414	29465	47841;47842;47843;47844	47841					0.04282644448608153
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7842407226562	2	513.784567	1025.55458	-0.55125	-0.00028322	0.6857	0.0003523	0.13446	6.9082E-05	513.784855754653	73.156	0.69829	73.166	72.859	73.558	0.0096512					52	17	4	0	0	0	0.040175	4	8831	8831;8842;8859;8871		133.47	48.179	1	6142700			42543	9388	29414	29465	47845;47846;47847;47848	47845					0.04282644448608153
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.7844848632812	2	513.784567	1025.55458	-0.27806	-0.00014286	0.27014	0.00013879	-0.0079173	-4.0678E-06	513.7845948951862	73.478	0.8033	73.201	72.842	73.645	-0.2769					50	19	3	0	0	0	0.040175	3	8610	8610;8621;8632		133.47	56.622	1	3705100			42544	9388	29414	29465	47849;47850;47851	47849					0.04282644448608153
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.7841186523438	2	513.784567	1025.55458	-0.46147	-0.0002371	0.30544	0.00015693	-0.15603	-8.0168E-05	513.7846417695256	73.423	0.8372	73.158	72.81	73.647	-0.26479					52	20	3	0	0	0	0.040175	2	8633	8622;8633		133.47	57.483	1	4066400			42545	9388	29414	29465	47852;47853	47853					0.04282644448608153
LLDPSVFHV	9	Unmodified	_LLDPSVFHV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.7846069335938	2	513.784567	1025.55458	-0.37071	-0.00019046	0.32768	0.00016836	-0.043026	-2.2106E-05	513.7846530609853	73.266	0.92714	73.076	72.675	73.602	-0.19027					41	22	2	0	0	0	0.028181	1	8591	8591		143.02	58.104	1	3496200			42546	9388	29414	29465	47854	47854					0.04282644448608153
LLDPTNVFI	9	Unmodified	_LLDPTNVFI_					0	0	0		ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2928466796875	2	516.292225	1030.5699	-0.32414	-0.00016735	0.44851	0.00023156	0.12437	6.4214E-05	516.2924310337548	90.078	0.98729	90.091	89.674	90.661	0.013443					47	23	3	0	0	0	0.047345	1	11312	11312		129.68	9.0616	1	784730			42547	9249	29415	29466	47855	47855					0.05583511245822592
LLDPTNVFI	9	Unmodified	_LLDPTNVFI_					0	0	0		ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.292225	1030.5699	-0.95656	-0.00049386	1.1614	0.00059962	0.20484	0.00010576	516.2929263009487	90.048	0.90452	90.048	89.731	90.636	0	0.066743	0.00060726	NaN	129.68	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632650			42548	9249	29415	29466							0.05583511245822592
LLDPTNVFI	9	Unmodified	_LLDPTNVFI_					0	0	0		ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.292225	1030.5699	0.053838	2.7796E-05	-0.37837	-0.00019535	-0.32453	-0.00016755	516.2923535034704	90.032	0.77843	90.015	89.667	90.445	-0.016708	0.033394	-0.00098267	NaN	129.68	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601670			42549	9249	29415	29466							0.05583511245822592
LLDPTNVFI	9	Unmodified	_LLDPTNVFI_					0	0	0		ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.292225	1030.5699	-0.99504	-0.00051373	3.8065	0.0019652	2.8114	0.0014515	516.2930373267856	90.029	0.87887	89.866	89.215	90.093	-0.16261	-0.11508	0.0033385	NaN	129.68	30	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120370			42550	9249	29415	29466							0.05583511245822592
LLDPTNVFI	9	Unmodified	_LLDPTNVFI_					0	0	0		ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.292225	1030.5699	-0.43332	-0.00022372	2.837	0.0014647	2.4037	0.001241	516.2925194632478	90.03	0.49884	89.904	89.589	90.088	-0.12512	-0.077054	0.0023375	NaN	129.68	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115100			42551	9249	29415	29466							0.05583511245822592
LLDPTNVFI	9	Unmodified	_LLDPTNVFI_					0	0	0		ENST00000461438.5_1_10:120917240-120925159:-|nuORF;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENSG00000183605|ENST00000355697|SFXN4	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	ENST00000461438.5_1_10:120917240-120925159:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.292225	1030.5699	0.2863	0.00014781	-0.47936	-0.00024749	-0.19306	-9.9676E-05	516.2919552050274	90.102	0.53455	89.964	89.662	90.196	-0.13824	-0.017508	-0.001087	NaN	129.68	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118000			42552	9249	29415	29466							0.05583511245822592
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.322265625	2	596.322045	1190.62954	-0.32031	-0.00019101	0.18385	0.00010963	-0.13646	-8.1374E-05	596.3221342297215	50.289	1.5504	50.183	49.894	51.444	-0.10558					119	40	5	0	0	0	4.7119E-06	5	5092	5083;5092;5104;5116;5130		248.96	121.5	1	23014000			42553	456	29416	29467	47856;47857;47858;47859;47860	47857					0.04184782189190628
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.3219604492188	2	596.322045	1190.62954	-0.44987	-0.00026827	0.56671	0.00033794	0.11684	6.9676E-05	596.3223688228683	50.558	1.471	50.278	49.992	51.463	-0.27977					106	38	5	0	0	0	4.7777E-06	5	5139	5116;5127;5139;5151;5164		271.48	144.02	1	23801000			42554	456	29416	29467	47861;47862;47863;47864;47865	47863					0.04184782189190628
LLDQGQLNKY	10	Unmodified	_LLDQGQLNKY_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.3221435546875	2	596.322045	1190.62954	-0.031871	-1.9006E-05	0.11437	6.8199E-05	0.082494	4.9193E-05	596.3221199743111	50.44	1.6637	50.26	49.864	51.527	-0.18071					123	43	5	0	0	0	4.4598E-06	6	5093	5093;5103;5115;5127;5140;5153		271.48	149.31	1	23982000			42555	456	29416	29467	47866;47867;47868;47869;47870;47871	47866					0.04184782189190628
LLDQLTKAL	9	Unmodified	_LLDQLTKAL_					0	0	0		ENST00000510524.5_1_3:129170769-129177513:+|nuORF	ENST00000510524.5_1_3:129170769-129177513:+|nuORF	ENST00000510524.5_1_3:129170769-129177513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.78668212890625	2	507.813325	1013.6121	0.51086	0.00025942	-0.35754	-0.00018156	0.15332	7.7859E-05	507.81298733000784	72.302	0.65626	72.021	71.769	72.425	-0.28124					39	16	3	0	0	0	0.024323	1	8739	8739		53.351	0	1	1386600			42556	15824	29417	29468	47872	47872					0.10583486654184071
LLDRAYEPL	9	Unmodified	_LLDRAYEPL_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2999877929688	2	545.300581	1088.58661	0.074613	4.0686E-05	-0.39532	-0.00021557	-0.3207	-0.00017488	545.3002082365441	74.467	0.76583	74.204	73.966	74.732	-0.26326					39	17	3	0	0	0	0.70156	1	8793	8793		45.972	3.108	1	1194900			42557	6841	29418	29469	47873	47873					0.0458601213174461
LLDREVANI	9	Unmodified	_LLDREVANI_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2451782226562	2	521.798206	1041.58186	-0.96916	-0.00050571	-0.19423	-0.00010135	-1.1634	-0.00060705	521.7984924805843	50.01	0.81304	50.01	49.731	50.544	0					62	23	3	0	0	0	0.024344	1	5301	5301		54.776	13.998	1	1530200	+		42558	27060	29419	29470	47874	47874					0.0627312798899311
LLDRFAQPV	9	Unmodified	_LLDRFAQPV_					0	0	0		ENSG00000135976|ENST00000420699|ANKRD36	ENSG00000135976|ENST00000420699|ANKRD36	ENSG00000135976|ENST00000420699|ANKRD36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.282958984375	2	529.803291	1057.59203	-0.76127	-0.00040332	-4.1856	-0.0022175	-4.9469	-0.0026209	529.8012146054903	48.817	0.53441	48.665	48.295	48.829	-0.15277					23	14	2	0	0	0	0.024405	1	4940	4940		44.117	2.6902	1	203230			42559	4965	29420	29471	47875	47875					0.06553735714237519
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.3136596679688	2	524.313492	1046.61243	-1.1636	-0.00061009	0.83226	0.00043636	-0.33133	-0.00017372	524.3139743647313	73.243	1.977	73.243	72.74	74.717	0					163	48	5	0	0	0	0.025498	8	8924	8901;8912;8924;8937;8949;8961;8974;8987		145.16	68.382	1	37349000			42560	3705	29421	29472	47876;47877;47878;47879;47880;47881;47882;47883	47878					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.3131103515625	2	524.313492	1046.61243	-0.46386	-0.00024321	0.11655	6.1108E-05	-0.34731	-0.0001821	524.313586738568	73.555	1.9281	73.283	72.883	74.811	-0.27126					157	47	5	0	0	0	0.025498	8	8924	8914;8924;8935;8947;8959;8971;8985;8997		145.16	57.401	1	37298000			42561	3705	29421	29472	47884;47885;47886;47887;47888;47889;47890;47891	47885					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.3135375976562	2	524.313492	1046.61243	-0.21638	-0.00011345	0.038222	2.004E-05	-0.17816	-9.3412E-05	524.3135429405381	73.249	2.0368	73.258	72.818	74.854	0.0096512					141	49	5	0	0	0	0.014738	8	8889	8830;8840;8853;8865;8877;8889;8901;8914		163.15	70.32	1	36374000			42562	3705	29421	29472	47892;47893;47894;47895;47896;47897;47898;47899	47897					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.313720703125	2	524.313492	1046.61243	-0.40776	-0.0002138	-0.098771	-5.1787E-05	-0.50654	-0.00026558	524.3134409815302	73.471	0.95547	73.194	72.842	73.798	-0.2769					45	24	2	0	0	0	0.014738	5	8613	8603;8613;8624;8636;8650		163.15	58.404	1	20711000			42563	3705	29421	29472	47900;47901;47902;47903;47904	47901					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3131103515625	2	524.313492	1046.61243	-0.38865	-0.00020377	-0.1771	-9.2857E-05	-0.56575	-0.00029663	524.3133944866823	73.425	0.90877	73.16	72.852	73.761	-0.26479					43	22	2	0	0	0	0.025498	5	8639	8618;8627;8639;8652;8664		145.16	65.705	1	17753000			42564	3705	29421	29472	47905;47906;47907;47908;47909	47907					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.3135375976562	2	524.313492	1046.61243	-0.26397	-0.0001384	-0.29673	-0.00015558	-0.5607	-0.00029398	524.3133464400688	73.279	1.0456	73.089	72.718	73.764	-0.19026					49	26	2	0	0	0	0.013337	5	8589	8578;8589;8602;8614;8627		176.44	59.541	1	16953000			42565	3705	29421	29472	47910;47911;47912;47913;47914	47911					0.09098906374038052
LLDRGNSF	8	Unmodified	_LLDRGNSF_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.3024597167969	2	461.243067	920.47158	-0.72116	-0.00033263	0.78108	0.00036027	0.059914	2.7635E-05	461.2432523121745	45.949	0.52124	45.797	45.578	46.099	-0.15156					23	14	2	0	0	0	0.027866	1	4493	4493		42.396	0	1	385010	+		42566	20681	29422	29473	47915	47915					0.00816327720622212
LLDRRLHLQ	9	Unmodified	_LLDRRLHLQ_					0	0	0		ENST00000514992.2_1_17:28928777-28942977:+|nuORF	ENST00000514992.2_1_17:28928777-28942977:+|nuORF	ENST00000514992.2_1_17:28928777-28942977:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.353271484375	2	582.354014	1162.69348	-1.4953	-0.00087077	0.5142	0.00029945	-0.98105	-0.00057132	582.3541963101079	102.27	0.85596	102.27	101.95	102.81	0					90	19	7	0	0	0	0.78069	1	13086	13086		40.573	3.4135	1	8600900			42567	15890	29423	29474	47916	47916					0.11863607136797327
LLDSGRIEI	9	Unmodified	_LLDSGRIEI_					0	0	0		ENSG00000161243|ENST00000292853|FBXO27	ENSG00000161243|ENST00000292853|FBXO27	ENSG00000161243|ENST00000292853|FBXO27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2929382324219	2	508.292756	1014.57096	-0.6292	-0.00031982	1.7571	0.00089313	1.1279	0.00057331	508.2928982004938	74.194	1.4011	74.204	73.924	75.325	0.0096512					82	33	4	0	0	0	0.1158	1	9030	9030		107.01	5.7549	1	6864000			42568	6868	29424	29475	47917	47917					0.06425725614690236
LLDSIGAPHT	10	Unmodified	_LLDSIGAPHT_					0	0	0			REV__ENST00000468403.1_1_1:153748971-153749722:+|nuORF	REV__ENST00000468403.1_1_1:153748971-153749722:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.3138427734375	2	512.277106	1022.53966	-0.82797	-0.00042415	1.0149	0.00051993	0.18698	9.5784E-05	512.2774478903114	50.153	0.56573	50.153	49.913	50.479	0					44	16	4	0	0	0	0.03519	1	5270	5270		35.618	5.7767	1	2147800	+		42569	24261	29425	29476	47918	47918					0.029291525806115715
LLDSRSALI	9	Unmodified	_LLDSRSALI_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MSMS	OPSCC_39_ClassI_Rep-2	2	494.2957458496094	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.28	1	106.28	105.78	106.78	-0.0013123								0	0	0	0.48579	1	13604	13604		54.776	3.4409	1		+		42570	26456	29426	29477	47919	47919					0.08222029477337855
LLDSRTLW	8	Unmodified	_LLDSRTLW_					0	0	0		ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.28192138671875	2	502.282192	1002.54983	0.82259	0.00041317	-1.0317	-0.0005182	-0.20911	-0.00010503	502.281579407372	51.456	0.94162	51.345	50.934	51.876	-0.11163					62	24	4	0	0	0	0.44658	1	5286	5286		90.777	5.4172	1	5393500			42571	2286	29427	29478	47920	47920					0.048657603058586574
LLDTACKMV	9	Carbamidomethyl (C)	_LLDTAC(Carbamidomethyl (C))KMV_	LLDTAC(1)KMV		LLDTAC(66)KMV		0	1	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.274169921875	2	525.769745	1049.52494	-0.33165	-0.00017437	0.7681	0.00040385	0.43645	0.00022947	525.7695742420977	34.074	1.1849	33.867	33.627	34.812	-0.20696					73	29	4	0	0	0	0.39228	1	2514	2514		66.429	20.457	1	9132600			42572	7729	29428	29479	47921	47921	92				0.0021562111660387018
LLDTELDLY	9	Unmodified	_LLDTELDLY_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.784423828125	2	547.78443	1093.55431	0.41025	0.00022473	-0.97562	-0.00053443	-0.56537	-0.0003097	547.7839600500071	83.873	0.89195	83.662	83.476	84.368	-0.21159					54	20	4	0	0	0	0.13494	1	10126	10126		102.77	3.3984	1	920300			42573	5365	29429	29480	47922	47922					0.011271799381120218
LLDTELDLY	9	Unmodified	_LLDTELDLY_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.7849731445312	2	547.78443	1093.55431	0.48421	0.00026524	-0.72386	-0.00039652	-0.23965	-0.00013128	547.7840350724524	83.931	0.86034	83.761	83.451	84.311	-0.16915					49	19	4	0	0	0	0.33245	1	10158	10158		71.296	7.9894	1	629740			42574	5365	29429	29480	47923	47923					0.011271799381120218
LLDTELDLY	9	Unmodified	_LLDTELDLY_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.7859497070312	2	547.78443	1093.55431	0.033413	1.8303E-05	-0.23451	-0.00012846	-0.20109	-0.00011016	547.7842981937149	83.901	0.77396	83.762	83.506	84.28	-0.13816					55	17	4	0	0	0	0.80658	1	10131	10131		38.806	0	1	666100			42575	5365	29429	29480	47924	47924					0.011271799381120218
LLDTIQAVS	9	Unmodified	_LLDTIQAVS_					0	0	0			REV__ENSG00000183346|ENST00000648843|CABCOCO1	REV__ENSG00000183346|ENST00000648843|CABCOCO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7349853515625	2	480.274032	958.533512	0.10389	4.9897E-05	-1.2644	-0.00060727	-1.1605	-0.00055737	480.2733545286547	59.935	0.44386	59.759	59.554	59.998	-0.1761					19	11	2	0	0	0	0.024457	1	6652	6652		29.15	2.4566	1	230600	+		42576	27567	29430	29481	47925	47925					0.05258634349092972
LLDTPVKTQY	10	Unmodified	_LLDTPVKTQY_					0	0	0		ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	590.2638549804688	2	589.326796	1176.63904	-0.34713	-0.00020457	0.50332	0.00029662	0.15619	9.2048E-05	589.3269809024277	52.865	0.6313	52.738	52.511	53.143	-0.12705					36	15	3	0	0	0	0.03519	1	5521	5521		70.816	24.864	1	841400			42577	7859	29431	29482	47926	47926					0.057785504747243976
LLDTPVKTQY	10	Unmodified	_LLDTPVKTQY_					0	0	0		ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.2637939453125	2	589.326796	1176.63904	-0.5921	-0.00034894	0.42766	0.00025203	-0.16444	-9.691E-05	589.3269543314166	53.042	0.65451	52.852	52.591	53.245	-0.18982					47	16	4	0	0	0	0.03519	1	5521	5521		67.494	50.026	1	1767800			42578	7859	29431	29482	47927	47927					0.057785504747243976
LLDTSCLLL	9	Unmodified	_LLDTSCLLL_					0	0	0		nc|ENSG00000176783|Q96T51-3|RUFY1	nc|ENSG00000176783|Q96T51-3|RUFY1	nc|ENSG00000176783|Q96T51-3|RUFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.780517578125	2	495.780636	989.546719	0.3343	0.00016574	-0.66705	-0.00033071	-0.33275	-0.00016497	495.7801626933624	89.255	0.96286	89.271	88.88	89.843	0.015907					60	22	4	0	0	0	0.24299	1	11168	11168		83.287	9.3125	1	2058500			42579	18543	29432	29483	47928	47928					0.05152749136846069
LLDVEVLSEE	10	Unmodified	_LLDVEVLSEE_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2464599609375	2	573.300444	1144.58634	-0.45486	-0.00026077	0.35628	0.00020426	-0.098578	-5.6515E-05	573.8003216358131	73.305	0.96889	73.04	72.638	73.607	-0.26479					42	23	3	0	0	0	0.03519	1	8679	8679		76.774	0	1	536830			42580	1059	29433	29484	47929	47929					0.019825476212417925
LLDVKLALD	9	Unmodified	_LLDVKLALD_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000176619|ENST00000325327|LMNB2	ENSG00000113368|ENST00000261366|LMNB1;ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.28204345703125	2	500.307875	998.601197	-0.16308	-8.1591E-05	0.043035	2.1531E-05	-0.12005	-6.006E-05	500.3073756000621	96.682	1.0021	96.682	96.234	97.236	0					37	22	3	0	0	0	0.024319	1	12383	12383		56.721	14.325	1	261750			42581	8653;3286	29434	29485	47930	47930					0.10184084279887884
LLDVKMRLEQ	10	Unmodified	_LLDVKMRLEQ_					0	0	0		ENST00000417510.5_1_17:16722254-16722455:-|nuORF	ENST00000417510.5_1_17:16722254-16722455:-|nuORF	ENST00000417510.5_1_17:16722254-16722455:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.22088623046875	3	415.572557	1243.69584	-0.40017	-0.0001663	3.3529	0.0013934	2.9527	0.0012271	415.5739387967536	24.713	0.25802	24.498	24.377	24.635	-0.2151					9	5	2	0	0	0	0.03519	1	1111	1111		45.022	13.388	1	30170			42582	13916	29435	29486	47931	47931					0.08374274759580658
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7657165527344	2	449.765843	897.517133	0.49315	0.0002218	0.0098503	4.4303E-06	0.50301	0.00022623	449.76556804618644	71.851	0.78798	71.861	71.543	72.331	0.0097656					53	20	4	0	0	0	0.11848	1	8645	8645		106.42	45.443	1	1829100			42583	10597	29436	29487	47932	47932					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.76593017578125	2	449.765843	897.517133	0.32905	0.00014799	-0.06287	-2.8277E-05	0.26618	0.00011972	449.7656572923575	72.205	0.73489	71.93	71.549	72.284	-0.27509					43	17	3	0	0	0	0.25032	3	8434	8434;8445;8458		82.305	24.547	1	2022500			42584	10597	29436	29487	47933;47934;47935	47933					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.7662658691406	2	449.765843	897.517133	0.36832	0.00016566	-0.12782	-5.749E-05	0.2405	0.00010817	449.765618053904	72.128	0.73955	71.866	71.519	72.259	-0.262					54	17	4	0	0	0	0.11848	4	8454	8443;8454;8467;8481		106.42	35.037	1	2728900			42585	10597	29436	29487	47936;47937;47938;47939	47937					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.7659606933594	2	449.765843	897.517133	-0.15248	-6.8579E-05	0.30916	0.00013905	0.15669	7.0472E-05	449.765863237256	72.035	0.78065	71.829	71.459	72.24	-0.20613					56	18	4	0	0	0	0.11848	4	8427	8406;8416;8427;8440		106.42	37.931	1	3598700			42586	10597	29436	29487	47940;47941;47942;47943	47942					0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.765843	897.517133	0.67932	0.00030554	-0.15432	-6.9409E-05	0.525	0.00023613	449.76552543134034	71.783	0.75577	71.783	71.415	72.17	0	-0.072757	-0.00014682	NaN	106.42	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1301100			42587	10597	29436	29487							0.06427553182993506
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	449.765843	897.517133	0.7412	0.00033337	-0.32406	-0.00014575	0.41714	0.00018762	449.76549339495665	72.151	0.71694	71.869	71.545	72.262	-0.28124	0.013123	-0.00029951	NaN	106.42	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1248800			42588	10597	29436	29487							0.06427553182993506
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2903137207031	2	511.287474	1020.5604	0.43145	0.0002206	-0.26685	-0.00013644	0.1646	8.4158E-05	511.28712642846284	50.804	1.0227	50.692	50.379	51.401	-0.11163					62	26	4	0	0	0	0.014918	1	5198	5198		162.25	40.076	1	2455500			42589	6129	29437	29488	47944	47944					0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2894592285156	2	511.287474	1020.5604	0.17343	8.8675E-05	-0.16903	-8.6422E-05	0.0044063	2.2529E-06	511.2872569065045	51.065	0.67274	50.788	50.443	51.116	-0.27643					40	17	3	0	0	0	0.020687	1	5215	5215		148.99	32.083	1	2413500			42590	6129	29437	29488	47945	47945					0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2893371582031	2	511.287474	1020.5604	0.52681	0.00026935	-0.58391	-0.00029855	-0.057096	-2.9193E-05	511.28704673247546	50.929	0.83912	50.749	50.462	51.302	-0.18071					49	21	3	0	0	0	0.020687	1	5201	5201		148.99	26.811	1	2667200			42591	6129	29437	29488	47946	47946					0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.287474	1020.5604	-0.40076	-0.0002049	1.1786	0.0006026	0.77783	0.0003977	511.2878172504955	50.784	0.26838	50.784	50.577	50.845	0	0.026796	0.0015009	NaN	162.25	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327230			42592	6129	29437	29488							0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.287474	1020.5604	-0.23025	-0.00011773	1.1152	0.00057017	0.88492	0.00045245	511.28776777505834	50.949	0.27144	50.799	50.626	50.897	-0.14915	0.041974	0.0014361	NaN	162.25	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343520			42593	6129	29437	29488							0.05093742960286818
LLDVQPHTV	9	Unmodified	_LLDVQPHTV_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.287474	1020.5604	-0.59726	-0.00030537	1.3717	0.00070134	0.77446	0.00039597	511.2879157216479	50.651	0.30419	50.732	50.51	50.814	0.080994	-0.025128	0.0016984	NaN	162.25	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417870			42594	6129	29437	29488							0.05093742960286818
LLDVRRSLRRF	11	Unmodified	_LLDVRRSLRRF_					0	0	0		ENSG00000125875|ENST00000354200|TBC1D20;nc|ENSG00000125875|Q96BZ9-3|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	ENSG00000125875|ENST00000354200|TBC1D20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.6269836425781	3	477.628276	1429.863	0.55603	0.00026557	-3.1708	-0.0015145	-2.6147	-0.0012489	477.62690384565883	104.3	1.1599	104.17	103.52	104.68	-0.12561					27	15	3	0	0	0	1.0501	1	12975	12975		25.068	3.2874	1	124690			42595	4159	29438	29489	47947	47947					0.16526303419323085
LLEACRTE	8	Unmodified	_LLEACRTE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7943115234375	2	467.73676	933.458967	-0.49473	-0.0002314	2.4773	0.0011587	1.9826	0.00092733	467.7386903895025	65.516	1.004	65.243	64.602	65.606	-0.27283					57	27	4	0	0	0	0.027866	1	7659	7659		25.45	10.786	1	303270			42596	1466	29439	29490	47948	47948					-0.010424517339401973
LLEACRTE	8	Unmodified	_LLEACRTE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	467.73676	933.458967	-0.64218	-0.00030037	3.0008	0.0014036	2.3586	0.0011032	467.73904224254403	65.196	0.73204	65.196	64.873	65.605	0	0.082794	0.003085	NaN	25.45	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320920			42597	1466	29439	29490							-0.010424517339401973
LLEACRTE	8	Unmodified	_LLEACRTE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	467.73676	933.458967	0.46942	0.00021956	2.9456	0.0013778	3.415	0.0015973	467.738041110664	65.099	0.74054	65.136	64.891	65.631	0.037384	0.022793	0.0030334	NaN	25.45	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468840			42598	1466	29439	29490							-0.010424517339401973
LLEACRTE	8	Unmodified	_LLEACRTE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	467.73676	933.458967	-0.31029	-0.00014513	-2.9505	-0.0013801	-3.2608	-0.0015252	467.73526261514905	65.277	0.40602	65.043	64.768	65.174	-0.2345	-0.070524	-0.0024823	NaN	25.45	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208470			42599	1466	29439	29490							-0.010424517339401973
LLEACRTE	8	Unmodified	_LLEACRTE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	467.73676	933.458967	-1.211	-0.00056645	-2.2054	-0.0010315	-3.4164	-0.001598	467.7355302185519	65.217	0.32724	65.015	64.859	65.186	-0.20254	-0.098511	-0.0017852	NaN	25.45	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236570			42600	1466	29439	29490							-0.010424517339401973
LLEACRTE	8	Unmodified	_LLEACRTE_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;ZFYVE26|p.P660Lfs*9|1|0.33|ENSG00000072121|chr14:67798285-67798285|C/-|frameshift_variant;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	467.73676	933.458967	-0.71586	-0.00033483	-2.7732	-0.0012971	-3.489	-0.0016319	467.73527670425545	65.298	0.36555	65.047	64.823	65.189	-0.25112	-0.065957	-0.0023164	NaN	25.45	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359000			42601	1466	29439	29490							-0.010424517339401973
LLEAEHLSK	9	Unmodified	_LLEAEHLSK_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.263671875	2	520.292756	1038.57096	-0.98731	-0.00051369	-0.7416	-0.00038585	-1.7289	-0.00089954	520.291931521523	55.997	0.1758	56.095	56.033	56.209	0.097893					7	4	2	0	0	0	0.024477	1	6154	6154		20.947	0	1	58267	+		42602	24109	29440	29491	47949	47949					0.05321725614680872
LLEAETMQ	8	Unmodified	_LLEAETMQ_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.7318420410156	2	467.731143	933.447733	-0.2161	-0.00010108	0.47335	0.0002214	0.25725	0.00012032	467.73123991974416	60.354	1.006	60.141	59.713	60.719	-0.21339					79	26	4	0	0	0	0.39824	1	6905	6905		97.473	0	1	5016000			42603	2051	29441	29492	47950	47950					-0.021652738280636186
LLEAFRTDK	9	Unmodified	_LLEAFRTDK_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.7559204101562	2	546.806031	1091.59751	0.25553	0.00013973	0.94901	0.00051892	1.2045	0.00065865	546.8057341266564	21.057	0.63852	20.861	20.484	21.123	-0.19577					29	12	3	0	0	0	0.024263	1	625	625		71.296	25.323	1	66363	+		42604	22090	29442	29493	47951	47951					0.05537414506011373
LLEAFRTDK	9	Unmodified	_LLEAFRTDK_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.806031	1091.59751	-1.625	-0.00088856	4.9449	0.0027039	3.3199	0.0018153	547.3108258195947	20.51	0.57648	20.51	20.176	20.753	0	-0.20909	0.0048994	NaN	71.296	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28688	+		42605	22090	29442	29493							0.05537414506011373
LLEAFRTDK	9	Unmodified	_LLEAFRTDK_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.806031	1091.59751	-1.0399	-0.00056861	1.0168	0.00055601	-0.023042	-1.26E-05	546.8061873910227	20.818	0.57116	20.714	20.424	20.995	-0.10477	-0.005441	0.00060361	NaN	71.296	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24358	+		42606	22090	29442	29493							0.05537414506011373
LLEAFRTDK	9	Unmodified	_LLEAFRTDK_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.806031	1091.59751	-0.02227	-1.2177E-05	-0.1512	-8.2678E-05	-0.17347	-9.4855E-05	546.8057231048496	20.969	0.53214	20.792	20.533	21.065	-0.17721	0.072422	-0.00067376	NaN	71.296	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66837	+		42607	22090	29442	29493							0.05537414506011373
LLEALECIL	9	Unmodified	_LLEALECIL_					0	0	0		ENST00000547505.2_1_12:44054116-44054311:+|nuORF	ENST00000547505.2_1_12:44054116-44054311:+|nuORF	ENST00000547505.2_1_12:44054116-44054311:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.320068359375	2	508.788461	1015.56237	-0.43426	-0.00022095	2.7282	0.0013881	2.294	0.0011671	509.2909052895638	69.116	0.15527	69.132	69.053	69.209	0.015129					5	3	2	0	0	0	0.024466	1	8245	8245		18.324	0	1	76916			42608	16535	29443	29494	47952	47952					0.05521035653885065
LLEAYATL	8	Unmodified	_LLEAYATL_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2169494628906	2	447.252569	892.490584	0.72651	0.00032494	-3.8455	-0.0017199	-3.1189	-0.001395	447.2507041639669	25.234	0.67666	25.062	24.688	25.365	-0.17151					32	15	3	0	0	0	0.027866	1	1176	1176		31.955	6.5047	1	428990	+		42609	26216	29444	29495	47953	47953					0.040038642916556455
LLECFSEKV	9	Unmodified	_LLECFSEKV_					0	0	0		nc|ENSG00000159086|Q9Y5B6-4|PAXBP1;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1	nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8060302734375	2	534.275718	1066.53688	-0.96428	-0.00051519	2.9865	0.0015956	2.0222	0.0010804	534.2770963690155	80.665	1.1803	80.665	80.078	81.258	0					48	28	2	0	0	0	0.024257	1	9982	9982		67.494	16.158	1	129520			42610	6717	29445	29496	47954	47954					0.006275611314549678
LLECFSEKV	9	Unmodified	_LLECFSEKV_					0	0	0		nc|ENSG00000159086|Q9Y5B6-4|PAXBP1;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1	nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.275718	1066.53688	-1.3206	-0.00070555	3.8356	0.0020493	2.515	0.0013437	534.2776585835895	80.915	0.71587	80.939	80.573	81.288	0.023911	0.15006	0.00034086	NaN	67.494	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113010			42611	6717	29445	29496							0.006275611314549678
LLEDEPLL	8	Unmodified	_LLEDEPLL_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2926330566406	2	471.263133	940.511714	-0.18226	-8.5891E-05	-2.9814	-0.001405	-3.1636	-0.0014909	471.2614316908851	50.161	0.25697	50.161	50.084	50.341	0					9	7	2	0	0	0	0.027866	1	5228	5228		44.531	0	1	160280	+		42612	24168	29446	29497	47955	47955					0.03907829600530022
LLEEANKYEK	10	Unmodified	_LLEEANKYEK_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	619.3080444335938	2	618.82716	1235.63977	-0.49753	-0.00030788	4.1721	0.0025818	3.6745	0.0022739	619.3316777203897	48.102	0.29288	47.948	47.764	48.057	-0.15301					13	8	2	0	0	0	0.03519	1	4864	4864		49.442	25.919	1	260980			42613	2250	29447	29498	47956	47956					0.031373451237413974
LLEEANKYEK	10	Unmodified	_LLEEANKYEK_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	619.3077392578125	2	618.82716	1235.63977	-1.3612	-0.00084232	4.0348	0.0024968	2.6736	0.0016545	618.8295486662369	47.867	0.22352	47.93	47.742	47.966	0.06245					9	6	2	0	0	0	0.03519	1	4777	4777		51.193	26.674	1	192200			42614	2250	29447	29498	47957	47957					0.031373451237413974
LLEEATLVY	9	Unmodified	_LLEEATLVY_					0	0	0		ENSG00000141579|ENST00000269394|ZNF750;ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7896118164062	2	525.789515	1049.56448	-0.39534	-0.00020786	0.20308	0.00010678	-0.19226	-0.00010109	525.7894880404003	76.321	0.90143	76.053	75.779	76.681	-0.26806					36	21	2	0	0	0	0.25032	2	9051	9041;9051		82.305	34.45	1	1471600			42615	5508	29448	29499	47958;47959	47959					0.041677876633457345
LLEEATLVY	9	Unmodified	_LLEEATLVY_					0	0	0		ENSG00000141579|ENST00000269394|ZNF750;ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.789306640625	2	525.789515	1049.56448	-0.092937	-4.8865E-05	0.0045738	2.4049E-06	-0.088363	-4.6461E-05	525.789345513141	76.303	0.98693	76.051	75.754	76.741	-0.25162					45	23	3	0	0	0	0.22754	2	9055	9055;9067		85.359	35.335	1	1671400			42616	5508	29448	29499	47960;47961	47960					0.041677876633457345
LLEEATLVY	9	Unmodified	_LLEEATLVY_					0	0	0		ENSG00000141579|ENST00000269394|ZNF750;ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.78955078125	2	525.789515	1049.56448	0.070766	3.7208E-05	-0.22005	-0.0001157	-0.14929	-7.8494E-05	525.7892393225237	76.196	1.1555	76.028	75.703	76.859	-0.16854					49	27	3	0	0	0	0.08613	2	9024	9024;9034		115.46	56.677	1	1582100			42617	5508	29448	29499	47962;47963	47962					0.041677876633457345
LLEEATLVY	9	Unmodified	_LLEEATLVY_					0	0	0		ENSG00000141579|ENST00000269394|ZNF750;ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.789515	1049.56448	-1.3074	-0.00068744	3.7453	0.0019692	2.4379	0.0012818	525.7898478003104	75.976	0.22674	75.976	75.844	76.071	0	-0.051253	0.0039128	NaN	115.46	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47636			42618	5508	29448	29499							0.041677876633457345
LLEEEAVS	8	Unmodified	_LLEEEAVS_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.22802734375	2	445.22929	888.444028	-0.2891	-0.00012872	-2.5549	-0.0011375	-2.844	-0.0012662	445.22803051653125	26.11	1.524	25.942	25.662	27.186	-0.16816					93	39	4	0	0	0	1.0133	1	1355	1355		35.201	3.2459	1	5333000	+		42619	26717	29449	29500	47964	47964					-0.004656203302829454
LLEEHPLLL	9	Unmodified	_LLEEHPLLL_					0	0	0			REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7871704101562	2	538.82115	1075.62775	-0.74687	-0.00040243	-0.28815	-0.00015526	-1.035	-0.00055769	538.8205698646963	68.624	0.64936	68.624	68.407	69.056	0					34	16	3	0	0	0	0.024354	1	8237	8237		57.811	24.999	1	352770	+		42620	30542	29450	29501	47965	47965					0.09295773171243127
LLEEHPLLL	9	Unmodified	_LLEEHPLLL_					0	0	0			REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.787841796875	2	538.82115	1075.62775	-0.26863	-0.00014474	-0.86314	-0.00046508	-1.1318	-0.00060982	538.8205963460375	68.978	0.68428	68.686	68.366	69.051	-0.29267					41	17	3	0	0	0	0.024412	1	8223	8223		50.025	20.875	1	483510	+		42621	30542	29450	29501	47966	47966					0.09295773171243127
LLEEHPLLL	9	Unmodified	_LLEEHPLLL_					0	0	0			REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	REV__ENST00000336095.10_1_20:3914522-3914756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7874755859375	2	538.82115	1075.62775	-0.63927	-0.00034445	-0.7123	-0.0003838	-1.3516	-0.00072826	538.8203772402285	68.703	0.59908	68.72	68.497	69.096	0.017433					32	15	3	0	0	0	0.024262	1	8156	8156		68.485	18.46	1	423880	+		42622	30542	29450	29501	47967	47967					0.09295773171243127
LLEEINFGPVF	11	Unmodified	_LLEEINFGPVF_					0	0	0			REV__ENST00000558287.1_1_15:63632408-63634218:-|nuORF	REV__ENST00000558287.1_1_15:63632408-63634218:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	639.3394165039062	2	639.342446	1276.67034	0.23569	0.00015069	0.56718	0.00036262	0.80287	0.00051331	639.3427684848161	103.48	0.49986	103.47	103.27	103.77	-0.0043869					26	11	3	0	0	0	0.98904	1	13229	13229		39.253	4.1008	1	125520	+		42623	19232	29451	29502	47968	47968					0.043071235088063986
LLEELFGSM	9	Unmodified	_LLEELFGSM_					0	0	0			REV__ENSG00000167693|ENST00000336868|NXN	REV__ENSG00000167693|ENST00000336868|NXN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8230590820312	2	519.762443	1037.51033	-0.66516	-0.00034572	4.2667	0.0022177	3.6015	0.0018719	519.7643474367474	81.975	1.0382	82	81.578	82.616	0.025719					61	24	4	0	0	0	0.024	1	10202	10202		65.803	12.452	1	1325600	+		42624	26180	29452	29503	47969	47969					-0.006921277598848974
LLEEQLPLGKA	11	Unmodified	_LLEEQLPLGKA_					0	0	0		ENSG00000197646|ENST00000397747|PDCD1LG2;nc|ENSG00000197646|Q9BQ51-2|PDCD1LG2;nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	ENSG00000197646|ENST00000397747|PDCD1LG2;nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	ENSG00000197646|ENST00000397747|PDCD1LG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8558349609375	2	605.855721	1209.69689	0.33333	0.00020195	-0.12759	-7.73E-05	0.20574	0.00012465	605.855435743201	82.134	1.6348	82.024	81.646	83.28	-0.11006					91	38	5	0	0	0	0.82076	1	10218	10218		56.434	3.3448	1	2457500			42625	10029;18640	29453	29504	47970	47970					0.10042812400160983
LLEEWYGE	8	Unmodified	_LLEEWYGE_					0	0	0			REV__ENST00000471501.1_1_1:11709834-11710766:-|nuORF;REV__ENST00000474239.1_1_1:11724615-11732081:+|nuORF	REV__ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.821044921875	2	519.742565	1037.47058	-0.56432	-0.0002933	-1.7395	-0.00090407	-2.3038	-0.0011974	519.7418610154575	81.693	0.32518	81.562	81.38	81.705	-0.13075					11	7	2	0	0	0	0.027866	1	10161	10161		45.952	3.5558	1	42797	+		42626	22286;22287	29454	29505	47971	47971					-0.046659314389671636
LLEFGAKAQL	10	Unmodified	_LLEFGAKAQL_					0	0	0		nc|ENSG00000165192|Q8WXH4-3|ASB11;nc|ENSG00000165192|Q8WXH4-2|ASB11;ENSG00000165192|ENST00000480796|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.31689453125	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	1.1088	1	10966	10966		31.53	1.0262	1	3438300			42627	7377	29455	29506	47972	47972					0.08222889028479585
LLEFGAKAQL	10	Unmodified	_LLEFGAKAQL_					0	0	0		nc|ENSG00000165192|Q8WXH4-3|ASB11;nc|ENSG00000165192|Q8WXH4-2|ASB11;ENSG00000165192|ENST00000480796|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3162841796875	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0393	2	11277	11277;11326		40.778	3.6424	1	11601000			42628	7377	29455	29506	47973;47974	47973					0.08222889028479585
LLEFGAKAQL	10	Unmodified	_LLEFGAKAQL_					0	0	0		nc|ENSG00000165192|Q8WXH4-3|ASB11;nc|ENSG00000165192|Q8WXH4-2|ASB11;ENSG00000165192|ENST00000480796|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.0002	1	10691	10691		45.972	1.8554	1	4888900			42629	7377	29455	29506	47975	47975					0.08222889028479585
LLEFMRDASI	10	Unmodified	_LLEFMRDASI_					0	0	0			REV__ENSG00000178075|ENST00000358160|GRAMD1C	REV__ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	597.8564453125	2	597.812999	1193.61144	-1.0358	-0.00061922	-1.0551	-0.00063075	-2.0909	-0.00125	597.8122685562917	92.397	0.60785	92.388	92.121	92.729	-0.0082932					22	14	2	0	0	0	0.03519	1	11703	11703		25.574	5.5773	1	162300	+		42630	27163	29456	29507	47976	47976					0.022383239428108936
LLEGARGREV	10	Unmodified	_LLEGARGREV_					0	0	0			REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF	REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.7900390625	2	550.314554	1098.61456	-0.34505	-0.00018988	-3.6935	-0.0020326	-4.0386	-0.0022225	550.3125880070727	92.618	0.67159	92.626	92.341	93.013	0.0077286					31	15	3	0	0	0	0.03519	1	11684	11684		40.778	0	1	266460	+		42631	31605	29457	29508	47977	47977					0.06919335111865621
LLEGCPMFF	9	Unmodified	_LLEGCPMFF_					0	0	0			REV__ENSG00000174885|ENST00000534750|NLRP6	REV__ENSG00000174885|ENST00000534750|NLRP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7484130859375	2	528.748282	1055.48201	0.51812	0.00027396	-0.42477	-0.0002246	0.093346	4.9357E-05	528.7478249114087	84.976	3.36	84.838	83.845	87.205	-0.13752					151	78	4	0	0	0	0.72268	1	10275	10275		44.531	5.2782	1	1831100	+		42632	26901	29458	29509	47978	47978					-0.043511489408047055
LLEGFPKKG	9	Unmodified	_LLEGFPKKG_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|209|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|209|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|209|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7944641113281	2	494.794935	987.575317	0.040807	2.0191E-05	0.46701	0.00023108	0.50782	0.00025127	494.79504258189485	92.859	0.72391	92.859	92.537	93.261	0					45	16	4	0	0	0	0.4752	1	11777	11777		60.972	2.19	1	993100			42633	17727	29459	29510	47979	47979					0.08103234828274708
LLEGLKLMA	9	Unmodified	_LLEGLKLMA_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.30078125	2	494.298996	986.583439	0.89614	0.00044296	2.2975	0.0011357	3.1936	0.0015786	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	0.85329	1	12274	12274		35.618	6.4687	1	45891000			42634	4017	29460	29511	47980	47980					0.08961045753392227
LLEGQCTLL	9	Unmodified	_LLEGQCTLL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.79498291015625	2	495.270435	988.526318	-0.04878	-2.4159E-05	0.6626	0.00032817	0.61382	0.00030401	495.2700056231291	92.65	0.47038	92.65	92.454	92.924	0					19	10	3	0	0	0	0.023417	1	11789	11789		79.451	13.022	1	115430	+		42635	28328	29461	29512	47981	47981					0.03159578477016112
LLEGQCTLL	9	Unmodified	_LLEGQCTLL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7950134277344	2	495.270435	988.526318	-0.37594	-0.00018619	-0.0097364	-4.8222E-06	-0.38567	-0.00019101	495.2700577032456	92.587	0.59064	92.578	92.353	92.944	-0.0082932					14	13	2	0	0	0	0.023837	1	11747	11747		74.255	8.4519	1	88392	+		42636	28328	29461	29512	47982	47982					0.03159578477016112
LLEGSEIYL	9	Unmodified	_LLEGSEIYL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.781982421875	2	518.78169	1035.54883	-0.61517	-0.00031914	0.16282	8.4467E-05	-0.45235	-0.00023467	518.7815811101284	78.935	1.2125	78.935	78.489	79.701	0					55	28	3	0	0	0	0.10076	2	9779	9779;9791		110.34	16.331	1	1384100			42637	10817	29462	29513	47983;47984	47983					0.03247501146279319
LLEGSEIYL	9	Unmodified	_LLEGSEIYL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.781494140625	2	518.78169	1035.54883	-0.49785	-0.00025827	-0.093886	-4.8706E-05	-0.59173	-0.00030698	518.7814855112049	79.108	0.91544	78.936	78.568	79.484	-0.17226					57	21	4	0	0	0	0.074956	2	9773	9762;9773		119.56	28.032	1	1215800			42638	10817	29462	29513	47985;47986	47986					0.03247501146279319
LLEGSEIYL	9	Unmodified	_LLEGSEIYL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.781982421875	2	518.78169	1035.54883	-0.41568	-0.00021564	-0.029634	-1.5374E-05	-0.44531	-0.00023102	518.7815117364016	78.908	1.1172	78.926	78.609	79.726	0.018669					61	26	4	0	0	0	0.10076	2	9702	9702;9713		110.34	30.398	1	1591100			42639	10817	29462	29513	47987;47988	47987					0.03247501146279319
LLEGSEIYL	9	Unmodified	_LLEGSEIYL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.78169	1035.54883	0.17839	9.2546E-05	-1.0593	-0.00054956	-0.88093	-0.00045701	518.7807571585548	79.083	0.5013	78.829	78.644	79.145	-0.25471	-0.066269	-0.0009818	NaN	119.56	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196550			42640	10817	29462	29513							0.03247501146279319
LLEGSEIYL	9	Unmodified	_LLEGSEIYL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.78169	1035.54883	0.40858	0.00021197	-1.5112	-0.000784	-1.1026	-0.00057203	518.7805201433376	79.113	0.5844	78.882	78.563	79.148	-0.23141	-0.0129	-0.0014507	NaN	119.56	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220990			42641	10817	29462	29513							0.03247501146279319
LLEGSEIYL	9	Unmodified	_LLEGSEIYL_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.78169	1035.54883	0.24143	0.00012525	-1.3146	-0.00068199	-1.0732	-0.00055674	518.7808538281405	79.013	0.54707	78.862	78.563	79.11	-0.15051	-0.032901	-0.0012467	NaN	119.56	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171760			42642	10817	29462	29513							0.03247501146279319
LLEILHEIK	9	Unmodified	_LLEILHEIK_					0	0	0		ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A	ENST00000556039.5_1_14:53110276-53130527:-|nuORF	ENST00000556039.5_1_14:53110276-53130527:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3442993164062	2	554.342249	1106.66995	-0.30425	-0.00016866	3.8408	0.0021291	3.5366	0.0019605	554.3442259508357	77.241	2.1141	77.03	76.708	78.822	-0.21087					135	50	5	0	0	0	0.31037	1	9546	9546		74.255	2.3776	1	6155600			42643	10068	29463	29514	47989	47989					0.12087748579597246
LLEKAATK	8	Unmodified	_LLEKAATK_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.9337158203125	2	437.273835	872.533118	0.52874	0.00023121	-2.3118	-0.0010109	-1.7831	-0.0007797	437.2724534718358	20.901	0.44201	20.705	20.484	20.926	-0.19577					18	8	3	0	0	0	0.027866	1	589	589		34.173	0	1	226950	+		42644	20364	29464	29515	47990	47990					0.09175259419885151
LLEKASVLF	9	Unmodified	_LLEKASVLF_					0	0	0		nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENSG00000131941|ENST00000254260|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2740173339844	2	510.310418	1018.60628	-0.32845	-0.00016761	0.53942	0.00027527	0.21097	0.00010766	510.31033653606227	75.936	0.93932	75.678	75.24	76.179	-0.25865					53	23	3	0	0	0	0.023417	1	8979	8979		58.782	0	1	490170			42645	4560	29465	29516	47991	47991					0.09772388142528143
LLEKASVLFN	10	Unmodified	_LLEKASVLFN_					0	0	0		nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENSG00000131941|ENST00000254260|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3305053710938	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0393	1	11154	11154		40.778	5.1599	1	4298500			42646	4560	29466	29517	47992	47992					0.0881915819995811
LLEKASVLFN	10	Unmodified	_LLEKASVLFN_					0	0	0		nc|ENSG00000131941|Q8IUC4-2|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1;ENSG00000131941|ENST00000254260|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3308715820312	2	567.331882	1132.64921	-0.57331	-0.00032526	-2.9862	-0.0016942	-3.5595	-0.0020194	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.1088	1	10959	10959		31.53	1.0262	1	5699600			42647	4560	29466	29517	47993	47993					0.0881915819995811
LLEKDEFKS	9	Unmodified	_LLEKDEFKS_					0	0	0		ENSG00000116096|ENST00000234454|SPR	ENSG00000116096|ENST00000234454|SPR	ENSG00000116096|ENST00000234454|SPR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8316650390625	2	554.797872	1107.58119	-0.23761	-0.00013183	-0.54871	-0.00030442	-0.78632	-0.00043625	554.7973326940976	48.531	0.39469	48.349	48.126	48.521	-0.18206					17	10	2	0	0	0	0.024477	1	4809	4809		20.947	0	1	231950			42648	3517	29467	29518	47994	47994					0.031702885492677524
LLEKEILFY	9	Unmodified	_LLEKEILFY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.3365478515625	2	584.336633	1166.65871	-0.35764	-0.00020898	0.26109	0.00015257	-0.096545	-5.6415E-05	584.3366405110571	73.741	0.62143	73.465	73.133	73.755	-0.2769					42	15	4	0	0	0	0.15388	2	8676	8664;8676		98.582	22.412	1	2310200			42649	6323	29468	29519	47995;47996	47996					0.08204926485473152
LLEKEILFY	9	Unmodified	_LLEKEILFY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.3365478515625	2	584.336633	1166.65871	-1.0415	-0.0006086	0.97629	0.00057048	-0.065239	-3.8121E-05	584.3370540047831	73.664	0.54832	73.399	73.139	73.687	-0.26479					45	13	4	0	0	0	0.071379	2	8678	8678;8690		120.87	44.699	1	2289200			42650	6323	29468	29519	47997;47998	47997					0.08204926485473152
LLEKEILFY	9	Unmodified	_LLEKEILFY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.3360595703125	2	584.336633	1166.65871	-0.75589	-0.0004417	0.37004	0.00021623	-0.38586	-0.00022547	584.3366893616278	73.486	0.63611	73.296	73.007	73.643	-0.19026					51	15	4	0	0	0	0.062622	2	8634	8634;8647		124.08	30.074	1	2179000			42651	6323	29468	29519	47999;48000	47999					0.08204926485473152
LLEKLQVAHTK	11	Unmodified	_LLEKLQVAHTK_					0	0	0		nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2646179199219	3	427.2626	1278.76597	0.50024	0.00021373	3.7573	0.0016053	4.2575	0.0018191	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.044	1	5879	5879		26.75	1.6237	1	61030000			42652	4985	29469	29520	48001	48001					0.13773896419684206
LLEKLQVAHTK	11	Unmodified	_LLEKLQVAHTK_					0	0	0		nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.264404296875	3	427.2626	1278.76597	0.1987	8.4896E-05	4.029	0.0017214	4.2277	0.0018063	427.26444300600974	54.063	2.6284	53.818	53.421	56.049	-0.2453					263	76	6	0	0	0	1.0674	1	5753	5753		20.315	0.28454	1	50149000			42653	4985	29469	29520	48002	48002					0.13773896419684206
LLEKMLVLD	9	Oxidation (M)	_LLEKM(Oxidation (M))LVLD_		LLEKM(1)LVLD		LLEKM(130)LVLD	0	0	1		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.31298828125	2	545.314843	1088.61513	-0.47685	-0.00026003	-2.1741	-0.0011856	-2.6509	-0.0014456	545.313591124939	100.7	0.98195	100.7	100.14	101.12	0					50	22	3	0	0	0	0.039744	2	12894	12894;12907		133.81	25.725	1	893870			42654	3168	29470	29521	48003;48004	48003		119			0.07436993716669349
LLEKMLVLD	9	Oxidation (M)	_LLEKM(Oxidation (M))LVLD_		LLEKM(1)LVLD		LLEKM(99)LVLD	0	0	1		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3129272460938	2	545.314843	1088.61513	-0.78808	-0.00042975	-1.6903	-0.00092177	-2.4784	-0.0013515	545.3138812126966	100.73	0.99254	100.74	100.1	101.09	0.0090332					52	23	3	0	0	0	0.15029	1	12842	12842		99.375	8.5983	1	888250			42655	3168	29470	29521	48005	48005		119			0.07436993716669349
LLEKMLVLD	9	Oxidation (M)	_LLEKM(Oxidation (M))LVLD_		LLEKM(1)LVLD		LLEKM(130)LVLD	0	0	1		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.817138671875	2	545.314843	1088.61513	-0.46866	-0.00025557	-2.5154	-0.0013717	-2.984	-0.0016272	545.3132771611588	100.84	0.80174	100.83	100.43	101.23	-0.0054398					46	19	3	0	0	0	0.057894	3	12802	12802;12816;12828		125.81	17.727	1	860210			42656	3168	29470	29521	48006;48007;48008	48006		119			0.07436993716669349
LLEKMLVLD	9	Oxidation (M)	_LLEKM(Oxidation (M))LVLD_		LLEKM(1)LVLD		LLEKM(93)LVLD	0	0	1		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3134155273438	2	545.314843	1088.61513	0.43093	0.00023499	-0.59618	-0.00032511	-0.16525	-9.0115E-05	545.314223860613	100.28	0.64389	100.16	100.07	100.71	-0.12503					33	20	2	0	0	0	0.17822	1	12488	12488		93.195	10.955	1	187590			42657	3168	29470	29521	48009	48009		119			0.07436993716669349
LLEKMLVLD	9	Oxidation (M)	_LLEKM(Oxidation (M))LVLD_					0	0	1		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	545.314843	1088.61513	-0.44893	-0.00024481	4.7574	0.0025943	4.3084	0.0023495	545.3175087487701	100.29	0.33849	100.29	100.14	100.47	-0.0050812	0.054477	0.0020352	NaN	93.195	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140900			42658	3168	29470	29521				119			0.07436993716669349
LLEKMLVLD	9	Oxidation (M)	_LLEKM(Oxidation (M))LVLD_					0	0	1		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	545.314843	1088.61513	-0.43795	-0.00023882	2.7383	0.0014932	2.3003	0.0012544	545.3161053729997	100.43	0.3588	100.26	100.14	100.5	-0.17088	0.021417	-0.00016691	NaN	93.195	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164650			42659	3168	29470	29521				119			0.07436993716669349
LLEKVEVIT	9	Unmodified	_LLEKVEVIT_					0	0	0		ENST00000587411.5_1_19:5921137-5924855:-|nuORF;ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF;nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3	ENST00000587411.5_1_19:5921137-5924855:-|nuORF	ENST00000587411.5_1_19:5921137-5924855:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2999877929688	2	522.320983	1042.62741	0.54468	0.0002845	-3.2863	-0.0017165	-2.7416	-0.001432	522.319190464981	18.478	0.34676	18.321	18.148	18.495	-0.15637					11	6	2	0	0	0	0.024427	1	292	292		34.173	5.023	1	105550			42660	1013	29471	29522	48010	48010					0.10780353451377778
LLELALKLP	9	Unmodified	_LLELALKLP_					0	0	0		ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.76055908203125	2	505.336436	1008.65832	0.0079932	4.0393E-06	-2.0521	-0.001037	-2.0441	-0.0010329	505.33515494226145	107.32	0.64336	107.32	106.8	107.44	-0.003479					45	20	3	0	0	0	0.024539	1	13674	13674		27.882	6.9353	1	297840			42661	7909	29472	29523	48011	48011					0.15433551556270686
LLELIKTRG	9	Unmodified	_LLELIKTRG_					0	0	0		ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	ENSG00000212122|ENST00000390666|TSSK1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.765625	2	521.834591	1041.65463	0.24143	0.00012599	3.1598	0.0016489	3.4012	0.0017749	521.8361940258624	78.95	0.50424	78.794	78.557	79.062	-0.15591					17	11	2	0	0	0	0.024457	1	9429	9429		21.96	0	1	100580			42662	10479	29473	29524	48012	48012					0.13546881782417586
LLELPWSL	8	Unmodified	_LLELPWSL_					0	0	0		ENST00000264658.10_1_17:37417522-37417675:-|nuORF	ENST00000264658.10_1_17:37417522-37417675:-|nuORF	ENST00000264658.10_1_17:37417522-37417675:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7786865234375	2	485.784036	969.553519	-0.98249	-0.00047728	-1.7414	-0.00084592	-2.7238	-0.0013232	485.78227415677964	56.244	0.47918	56.342	56.067	56.546	0.097897					18	12	2	0	0	0	0.027866	1	6179	6179		44.531	7.372	1	211830			42663	11568	29474	29525	48013	48013					0.06752430079700389
LLELSCFLEKV	11	Unmodified	_LLELSCFLEKV_					0	0	0		ENST00000303545.3_1_8:125498182-125498296:+|nuORF	ENST00000303545.3_1_8:125498182-125498296:+|nuORF	ENST00000303545.3_1_8:125498182-125498296:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.7249755859375	3	431.908947	1292.70501	-0.18912	-8.1683E-05	4.2408	0.0018316	4.0516	0.0017499	432.2450204113364	36.208	0.72469	36.003	35.718	36.443	-0.20518					44	19	3	0	0	0	0.024747	1	2848	2848		11.932	0	1	211690			42664	11972	29475	29526	48014	48014					0.07036623325211622
LLELWDKV	8	Unmodified	_LLELWDKV_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.81915283203125	2	508.294768	1014.57498	0.30077	0.00015288	2.6419	0.0013429	2.9427	0.0014958	508.2976667220801	22.941	0.46829	22.739	22.546	23.014	-0.20193					16	9	3	0	0	0	0.027866	1	865	865		47.916	17.412	1	47212			42665	13153;10050	29476	29527	48015	48015					0.06827815108408686
LLEMNKEQVS	10	Unmodified	_LLEMNKEQVS_					0	0	0			REV__ENST00000450485.6_1_12:123014665-123014707:+|nuORF	REV__ENST00000450485.6_1_12:123014665-123014707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.8065795898438	2	595.807913	1189.60127	-0.81019	-0.00048272	-2.3215	-0.0013832	-3.1317	-0.0018659	595.8065505789369	65.895	0.57176	65.643	65.353	65.925	-0.25111					42	13	4	0	0	0	0.77808	1	7537	7537		62.107	2.1766	1	1281400	+		42666	32702	29477	29528	48016	48016					0.014057162175959093
LLEMRVEF	8	Unmodified	_LLEMRVEF_					0	0	0		ENST00000328914.4_1_7:4807208-4807256:+|nuORF	ENST00000328914.4_1_7:4807208-4807256:+|nuORF	ENST00000328914.4_1_7:4807208-4807256:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7799682617188	2	518.778428	1035.5423	-1.3425	-0.00069646	4.2486	0.0022041	2.9061	0.0015076	518.7805579526613	51.41	1.39	51.497	50.926	52.316	0.087006					86	37	4	0	0	0	0.845	1	5364	5364		55.504	2.1528	1	8677900			42667	12310	29478	29529	48017	48017					0.02595284713925139
LLENLEVF	8	Unmodified	_LLENLEVF_					0	0	0			REV__nc|ENSG00000164889|P04920-2|SLC4A2	REV__nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25408935546875	2	488.771126	975.527698	-1.3005	-0.00063563	-2.8535	-0.0013947	-4.1539	-0.0020303	488.769538808799	29.443	0.78674	29.443	29.149	29.936	0					59	19	4	0	0	0	0.027866	1	1783	1783		42.474	18.272	1	2992000	+		42668	25813	29479	29530	48018	48018					0.03895535837432362
LLEPGLIAYT	10	Unmodified	_LLEPGLIAYT_					0	0	0		ENST00000562859.5_2_15:42565754-42566412:+|nuORF	ENST00000562859.5_2_15:42565754-42566412:+|nuORF	ENST00000562859.5_2_15:42565754-42566412:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.2747802734375	2	545.313158	1088.61176	-0.54057	-0.00029478	2.9678	0.0016184	2.4272	0.0013236	545.8160622043442	77.692	0.95013	77.692	77.252	78.202	0					48	22	3	0	0	0	0.03519	1	9602	9602		96.19	35.787	1	231350			42669	16853	29480	29531	48019	48019					0.07100066934322058
LLEPIRDF	8	Unmodified	_LLEPIRDF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.77996826171875	2	501.784567	1001.55458	-0.21109	-0.00010592	-3.3947	-0.0017034	-3.6058	-0.0018093	501.78172481802704	53.156	0.466	53.156	52.938	53.404	0					16	12	2	0	0	0	0.027866	1	5750	5750		31.955	1.4512	1	87773			42670	5147	29481	29532	48020	48020					0.05386644448606148
LLEQAQPLE	9	Unmodified	_LLEQAQPLE_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7804565429688	2	520.784764	1039.55498	0.46689	0.00024315	0.75671	0.00039408	1.2236	0.00063723	520.784782857817	85.408	0.33612	85.408	85.331	85.667	0					12	7	2	0	0	0	0.024319	1	10743	10743		47.657	24.615	1	146910	+		42671	29143	29482	29533	48021	48021					0.03678019377821329
LLEQLHIQFT	10	Unmodified	_LLEQLHIQFT_					0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.35009765625	2	621.348063	1240.68157	-0.76542	-0.00047559	3.8421	0.0023873	3.0767	0.0019117	621.3502573824375	102.84	0.51168	102.84	102.61	103.12	0					28	12	3	0	0	0	1.0997	1	13180	13180		14.865	0	1	1174100	+		42672	24343	29483	29534	48022	48022					0.07085945602921129
LLEQLQGKV	9	Unmodified	_LLEQLQGKV_					0	0	0			REV__ENST00000427391.1_1_X:130917988-130930157:-|nuORF	REV__ENST00000427391.1_1_X:130917988-130930157:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3233032226562	2	514.310949	1026.60735	0.34725	0.00017859	-0.33777	-0.00017372	0.0094731	4.8721E-06	514.3105640835277	74.51	0.46367	74.251	74.071	74.535	-0.25887					17	10	2	0	0	0	0.024466	1	9073	9073		47.657	9.8458	1	249440	+		42673	32294	29484	29535	48023	48023					0.09510602511409161
LLEQLYSAV	9	Unmodified	_LLEQLYSAV_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.758056640625	2	518.289682	1034.56481	0.64066	0.00033205	-3.9748	-0.0020601	-3.3341	-0.001728	518.2872201020233	59.352	1.0671	59.17	58.669	59.736	-0.18134					41	26	2	0	0	0	0.024405	1	6624	6624		27.882	0	1	398330	+		42674	20112	29485	29536	48024	48024					0.048912073831616
LLEQLYSAV	9	Unmodified	_LLEQLYSAV_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.289682	1034.56481	0.60623	0.0003142	-5.7097	-0.0029593	-5.1035	-0.0026451	518.2862603046792	59.588	0.65954	59.388	59.136	59.795	-0.20016	0.098356	-0.00046076	NaN	20.947	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233980	+		42675	20112	29485	29536							0.048912073831616
LLEQPPRSRPR	11	Unmodified	_LLEQPPRSRPR_					0	0	0		ENST00000308664.10_1_12:110719046-110719250:+|nuORF	ENST00000308664.10_1_12:110719046-110719250:+|nuORF	ENST00000308664.10_1_12:110719046-110719250:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7407531738281	3	450.265115	1347.77352	-0.30237	-0.00013615	-3.6117	-0.0016262	-3.914	-0.0017623	450.2631177165505	30.456	0.66467	30.465	30.123	30.787	0.0086708					34	15	3	0	0	0	0.024739	1	1949	1949		50.034	11.28	1	256940			42676	12034	29486	29537	48025	48025					0.11354048739963218
LLEQQQPQ	8	Unmodified	_LLEQQQPQ_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.82965087890625	2	492.261456	982.50836	-1.099	-0.000541	1.1874	0.00058453	0.088423	4.3527E-05	492.2619841990062	26.132	0.46206	25.896	25.636	26.098	-0.23603					24	12	3	0	0	0	0.027866	1	1297	1297		82.305	0	1	1192500			42677	10490	29487	29538	48026	48026					0.016405795465288975
LLERAFIDP	9	Unmodified	_LLERAFIDP_					0	0	0		ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2948608398438	2	537.303124	1072.5917	-1.5003	-0.00080614	1.3169	0.0007076	-0.1834	-9.8541E-05	537.3036574054829	55.695	0.54049	55.793	55.561	56.102	0.098015					34	14	3	0	0	0	0.023239	1	6140	6140		96.19	16.251	1	845500			42678	1619	29488	29539	48027	48027					0.058303159943761784
LLERKWLLH	9	Unmodified	_LLERKWLLH_					0	0	0		ENST00000299381.4_1_10:73975879-73983808:+|nuORF;ENST00000470481.2_1_10:73983622-73983808:+|nuORF	ENST00000299381.4_1_10:73975879-73983808:+|nuORF	ENST00000299381.4_1_10:73975879-73983808:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.3668212890625	2	604.369133	1206.72371	-0.44133	-0.00026673	-3.3918	-0.0020499	-3.8331	-0.0023166	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	0.98128	1	13252	13252		24.203	5.9407	1	5077600			42679	11881	29489	29540	48028	48028					0.12861965801971564
LLERLDRV	8	Unmodified	_LLERLDRV_					0	0	0		ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000398207.8_1_9:139916273-139923324:-|nuORF;ENST00000476211.5_1_9:139916273-139923324:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000494046.5_1_9:139914760-139922592:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.30828857421875	2	507.308741	1012.60293	-0.26039	-0.0001321	-1.191	-0.00060419	-1.4514	-0.00073629	507.3082857973226	43.417	1.8823	43.305	42.854	44.736	-0.11253					163	50	6	0	0	0	0.71833	5	3964	3964;4000;4012;4025;4037		65.803	5.5092	1	110540000			42680	15517;2835	29490	29541	48029;48030;48031;48032;48033	48029					0.0971313808852301
LLERLDRV	8	Unmodified	_LLERLDRV_					0	0	0		ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000398207.8_1_9:139916273-139923324:-|nuORF;ENST00000476211.5_1_9:139916273-139923324:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000494046.5_1_9:139914760-139922592:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3078918457031	2	507.308741	1012.60293	-0.8274	-0.00041975	-0.78171	-0.00039657	-1.6091	-0.00081632	507.3084751133819	43.57	1.8058	43.333	42.879	44.685	-0.23736					159	48	6	0	0	0	0.77775	5	4023	3967;3987;4023;4035;4048		60.972	5.4797	1	107780000			42681	15517;2835	29490	29541	48034;48035;48036;48037;48038	48036					0.0971313808852301
LLERLDRV	8	Unmodified	_LLERLDRV_					0	0	0		ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000398207.8_1_9:139916273-139923324:-|nuORF;ENST00000476211.5_1_9:139916273-139923324:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000494046.5_1_9:139914760-139922592:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3082275390625	2	507.308741	1012.60293	-1.0431	-0.00052917	-0.64497	-0.0003272	-1.6881	-0.00085637	507.3085410053728	43.586	1.6368	43.367	43.032	44.668	-0.21939					155	44	6	0	0	0	0.71833	3	3987	3987;4011;4035		65.803	5.5092	1	106880000			42682	15517;2835	29490	29541	48039;48040;48041	48039					0.0971313808852301
LLERLKEL	8	Unmodified	_LLERLKEL_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.T1556Nfs*3|1|0.74|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3065490722656	2	507.321317	1012.62808	-1.1427	-0.0005797	-0.5132	-0.00026036	-1.6559	-0.00084005	507.3207407899929	44.104	0.59251	43.86	43.593	44.186	-0.2444					25	15	3	0	0	0	0.027866	1	4075	4075		45.952	0	1	392710			42683	4847	29491	29542	48042	48042					0.12227192891100458
LLERQAFTW	9	Unmodified	_LLERQAFTW_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B;REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.844482421875	2	582.314023	1162.61349	-0.40459	-0.0002356	0.1886	0.00010983	-0.21599	-0.00012577	582.3138197100374	68.679	0.75674	68.436	68.033	68.79	-0.24278					37	18	3	0	0	0	0.024495	1	7966	7966		26.693	0	1	161790	+		42684	36457;20189	29492	29543	48043	48043					0.03869120742933774
LLESGFDPNI	10	Unmodified	_LLESGFDPNI_					0	0	0		ENSG00000186106|ENST00000335659|ANKRD46;nc|ENSG00000186106|Q86W74-1|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.790771484375	2	552.782222	1103.54989	-0.16692	-9.2269E-05	3.7997	0.0021004	3.6328	0.0020081	552.7840605061945	98.686	0.74529	98.518	98.285	99.03	-0.16778					35	16	3	0	0	0	0.91678	1	12224	12224		52.937	1.6012	1	165760			42685	9514	29493	29544	48044	48044					0.0022571551519376953
LLESPADKS	9	Unmodified	_LLESPADKS_					0	0	0			REV__ENSG00000108176|ENST00000225171|DNAJC12	REV__ENSG00000108176|ENST00000225171|DNAJC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2844543457031	2	480.25584	958.497126	0.54618	0.00026231	-0.31038	-0.00014906	0.2358	0.00011325	480.2555381612105	78.593	0.74306	78.401	78.056	78.799	-0.1921					28	17	2	0	0	0	0.024457	1	9726	9726		15.642	0	1	478590	+		42686	21714	29494	29545	48045	48045					0.016217574523807343
LLESRVPLL	9	Unmodified	_LLESRVPLL_					0	0	0		ENST00000543476.5_1_12:21590575-21590641:+|nuORF	ENST00000543476.5_1_12:21590575-21590641:+|nuORF	ENST00000543476.5_1_12:21590575-21590641:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.329345703125	2	520.329142	1038.64373	-0.37675	-0.00019603	1.2977	0.00067525	0.92099	0.00047922	520.3300203658873	69.687	0.79145	69.687	69.202	69.993	0					45	19	3	0	0	0	0.20967	1	8405	8405		87.754	2.8388	1	8390300			42687	16467	29495	29546	48046	48046					0.12595479408128085
LLESRVPLL	9	Unmodified	_LLESRVPLL_					0	0	0		ENST00000543476.5_1_12:21590575-21590641:+|nuORF	ENST00000543476.5_1_12:21590575-21590641:+|nuORF	ENST00000543476.5_1_12:21590575-21590641:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3297119140625	2	520.329142	1038.64373	-0.58303	-0.00030337	1.309	0.0006811	0.72595	0.00037773	520.3299963767871	69.806	0.86319	69.818	69.168	70.032	0.012421					45	21	3	0	0	0	0.17822	1	8340	8340		93.195	1.0048	1	8178600			42688	16467	29495	29546	48047	48047					0.12595479408128085
LLESVLQW	8	Unmodified	_LLESVLQW_					0	0	0			REV__ENST00000398637.9_1_12:46581846-46582023:-|nuORF	REV__ENST00000398637.9_1_12:46581846-46582023:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.8157958984375	2	494.279118	986.543683	-0.095816	-4.736E-05	-2.8275	-0.0013976	-2.9233	-0.0014449	494.2772708827742	67.148	0.9539	67.172	66.559	67.513	0.023911					32	22	2	0	0	0	0.027866	1	7884	7884		31.955	1.4512	1	535830	+		42689	31805	29496	29547	48048	48048					0.049872420743326984
LLETGFLDY	9	Unmodified	_LLETGFLDY_					0	0	0			REV__ENSG00000165983|ENST00000535784|PTER	REV__ENSG00000165983|ENST00000535784|PTER	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7733764648438	2	535.773865	1069.53318	-0.69305	-0.00037132	-0.79822	-0.00042767	-1.4913	-0.00079898	535.7733329535425	41.788	0.55768	41.558	41.274	41.832	-0.2303					44	14	4	0	0	0	0.36105	2	3690	3690;3701		68.485	8.6005	1	3607700	+		42690	25953	29497	29548	48049;48050	48049					0.001192146292396501
LLETGVSQV	9	Unmodified	_LLETGVSQV_					0	0	0		ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.26611328125	2	473.266207	944.517862	1.7408	0.00082386	-1.6092	-0.00076159	0.13157	6.2268E-05	473.2653361346061	73.889	0.76508	73.889	73.617	74.382	0					52	17	4	0	0	0	0.028071	3	9041	9017;9041;9054		143.11	10.048	1	6680100			42691	15863	29498	29549	48051;48052;48053	48052					0.04338347832049294
LLETGVSQV	9	Unmodified	_LLETGVSQV_					0	0	0		ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2662658691406	2	473.266207	944.517862	-0.086786	-4.1073E-05	0.060103	2.8445E-05	-0.026683	-1.2628E-05	473.2660898370753	73.907	0.84009	73.917	73.64	74.481	0.0096512					52	19	5	0	0	0	0.028071	2	8957	8957;8983		143.11	15.303	1	6356300			42692	15863	29498	29549	48054;48055	48054					0.04338347832049294
LLETGVSQV	9	Unmodified	_LLETGVSQV_					0	0	0		ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	ENST00000512914.1_1_4:6643196-6643628:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2662353515625	2	473.266207	944.517862	0.20331	9.6219E-05	-0.089486	-4.2351E-05	0.11382	5.3868E-05	473.26605417257434	74.068	1.331	73.881	73.686	75.017	-0.18795					65	33	3	0	0	0	0.50848	1	8704	8704		58.782	4.0056	1	2364000			42693	15863	29498	29549	48056	48056					0.04338347832049294
LLETKNALN	9	Unmodified	_LLETKNALN_					0	0	0		ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	ENST00000514613.5_1_17:49067015-49156972:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2942810058594	2	508.292756	1014.57096	-0.47056	-0.00023918	3.9643	0.002015	3.4938	0.0017759	508.2947246058536	94.464	1.0537	94.47	94.131	95.185	0.0059891					74	24	4	0	0	0	0.45795	1	11930	11930		62.107	3.3255	1	3558700			42694	842	29499	29550	48057	48057					0.06425725614701605
LLETLYLLG	9	Unmodified	_LLETLYLLG_					0	0	0		ENSG00000144410|ENST00000272852|CPO	ENSG00000144410|ENST00000272852|CPO	ENSG00000144410|ENST00000272852|CPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7998657226562	2	517.810251	1033.60595	0.028023	1.4511E-05	4.0939	0.0021199	4.1219	0.0021344	517.8125898937618	104.39	0.20181	104.27	104.17	104.38	-0.12561					6	4	2	0	0	0	0.024466	1	12988	12988		42.474	3.6683	1	164940			42695	5737	29500	29551	48058	48058					0.09048968422666803
LLETMRII	8	Unmodified	_LLETMRII_					0	0	0			REV__ENST00000548443.2_14:19856929-19857043:-|nuORF	REV__ENST00000548443.2_14:19856929-19857043:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7943420410156	2	494.79662	987.578688	-0.021013	-1.0397E-05	-2.8918	-0.0014308	-2.9128	-0.0014412	494.7950489151716	92.827	0.72279	92.835	92.544	93.267	0.0077286					39	16	3	0	0	0	0.71833	1	11704	11704		65.803	2.4969	1	984550	+		42696	34876	29501	29552	48059	48059					0.08440161610621999
LLETTASGLT	10	Unmodified	_LLETTASGLT_					0	0	0			REV__ENSG00000103994|ENST00000564754|ZNF106	REV__ENSG00000103994|ENST00000564754|ZNF106	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.28594970703125	2	503.276772	1004.53899	-0.27244	-0.00013711	-3.0594	-0.0015397	-3.3318	-0.0016768	503.2748964527459	63.291	0.51543	63.107	62.873	63.388	-0.18386					39	12	5	0	0	0	0.03519	1	7134	7134		40.778	0	1	972510	+		42697	21410	29502	29553	48060	48060					0.036903131409076195
LLEVEEPGTE	10	Unmodified	_LLEVEEPGTE_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.317626953125	2	558.276969	1114.53938	0.14922	8.3307E-05	-0.28742	-0.00016046	-0.1382	-7.7153E-05	558.2766298218154	67.301	0.92538	67.325	66.898	67.824	0.023911					51	22	3	0	0	0	0.03519	1	7893	7893		64.207	0.901	1	413940			42698	5494	29503	29554	48061	48061					-0.013303119299052923
LLEVIFAIN	9	Unmodified	_LLEVIFAIN_					0	0	0			REV__ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	REV__ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7482299804688	2	516.310418	1030.60628	-0.23818	-0.00012297	-1.0384	-0.00053615	-1.2766	-0.00065913	516.3094326908054	63.824	0.56971	63.596	63.212	63.782	-0.22773					20	14	2	0	0	0	0.024381	1	7203	7203		37.159	1.5408	1	315750	+		42699	19075	29504	29555	48062	48062					0.0922038814253483
LLEVMFAL	8	Unmodified	_LLEVMFAL_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.26904296875	2	468.267164	934.519776	-0.34566	-0.00016186	4.4319	0.0020753	4.0863	0.0019135	468.26911095689854	60.652	0.94478	60.439	60.079	61.024	-0.21339					60	24	4	0	0	0	0.58212	1	6943	6943		77.944	12.046	1	4426400			42700	6938	29505	29556	48063	48063					0.049896853162977095
LLEVRYLT	8	Unmodified	_LLEVRYLT_					0	0	0			REV__CHD8|p.I1890V|1|0.77|ENSG00000100888|chr14:21394127-21394127|T/C|missense_variant	REV__CHD8|p.I1890V|1|0.77|ENSG00000100888|chr14:21394127-21394127|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.24810791015625	2	503.800217	1005.58588	-0.37341	-0.00018812	-1.8778	-0.00094603	-2.2512	-0.0011342	503.79850924716027	60.963	0.37662	60.963	60.768	61.144	0					15	9	2	0	0	0	0.027866	1	7047	7047		44.531	16.277	1	269060	+		42701	19307	29506	29557	48064	48064					0.08331217482702868
LLEVWLTF	8	Unmodified	_LLEVWLTF_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2636413574219	2	510.791861	1019.56917	0.20592	0.00010518	-3.1496	-0.0016088	-2.9436	-0.0015036	510.78981206409446	81.314	0.41298	81.085	80.816	81.229	-0.2289					15	9	2	0	0	0	0.027866	1	9725	9725		35.201	9.7505	1	159060			42702	8901	29507	29558	48065	48065					0.06016716596752758
LLEVWLTF	8	Unmodified	_LLEVWLTF_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2638854980469	2	510.791861	1019.56917	-0.4323	-0.00022082	-2.7383	-0.0013987	-3.1706	-0.0016195	510.790233939361	81.216	0.78535	81.074	80.656	81.441	-0.14248					29	18	2	0	0	0	0.027866	1	9710	9710		28.254	1.4582	1	154690			42703	8901	29507	29558	48066	48066					0.06016716596752758
LLEWFVMVL	9	Unmodified	_LLEWFVMVL_					0	0	0			REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.7626342773438	2	575.322471	1148.63039	-0.19743	-0.00011359	3.1879	0.001834	2.9904	0.0017205	575.3244843964031	72.763	0.29561	72.499	72.3	72.595	-0.26479					10	6	2	0	0	0	0.024535	1	8533	8533		18.324	3.4595	1	81198	+		42704	36723	29508	29559	48067	48067					0.06201905304533284
LLEWSSTSTAD	11	Unmodified	_LLEWSSTSTAD_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.2866821289062	2	605.285325	1208.5561	-0.29963	-0.00018136	1.2349	0.00074749	0.9353	0.00056612	605.2858867234773	57.688	0.93591	57.498	57.042	57.978	-0.19017					73	24	5	0	0	0	0.95882	1	6322	6322		45.972	0	1	4871800	+		42705	28047	29509	29560	48068	48068					-0.03983811043940477
LLEWVRGP	8	Unmodified	_LLEWVRGP_					0	0	0			REV__ENST00000508131.5_3_5:38445751-38445802:+|nuORF	REV__ENST00000508131.5_3_5:38445751-38445802:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.8062438964844	2	485.279452	968.544351	-1.2197	-0.00059189	-2.6703	-0.0012959	-3.89	-0.0018878	485.2779660689428	34.395	0.71098	34.445	34.089	34.8	0.050255					50	17	5	0	0	0	0.027866	1	2486	2486		30.504	1.3541	1	686870	+		42706	34058	29510	29561	48069	48069					0.05882081514039328
LLEYADIQP	9	Unmodified	_LLEYADIQP_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8025512695312	2	531.279315	1060.54408	-0.40721	-0.00021634	-2.0327	-0.0010799	-2.4399	-0.0012963	531.7794249266942	79.611	0.78421	79.629	79.11	79.894	0.018677					30	18	2	0	0	0	0.02435	1	9764	9764		26.693	0	1	53185	+		42707	26930	29511	29562	48070	48070					0.016226170034997267
LLEYEAQKL	9	Unmodified	_LLEYEAQKL_					0	0	0		ENSG00000176422|ENST00000338146|SPRYD4	ENSG00000176422|ENST00000338146|SPRYD4	ENSG00000176422|ENST00000338146|SPRYD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.808239	1105.60193	0.2553	0.00014139	-0.98139	-0.0005435	-0.72609	-0.00040211	553.807543513277	87.954	0.42561	87.817	87.602	88.027	-0.13613					25	10	3	0	0	0	0.024381	1	10686	10686		29.15	8.2026	1	310070			42708	8638	29512	29563	48071	48071					0.05334878928942999
LLFAIILVM	9	Unmodified	_LLFAIILVM_					0	0	0			REV__AFG3L2|p.T260M|1|0.21|ENSG00000141385|chr18:12358917-12358917|G/A|missense_variant	REV__AFG3L2|p.T260M|1|0.21|ENSG00000141385|chr18:12358917-12358917|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7810668945312	2	516.829932	1031.64531	-0.82989	-0.00042891	3.8395	0.0019844	3.0097	0.0015555	516.8318630725186	44.525	0.67465	44.562	44.142	44.817	0.0369					37	19	3	0	0	0	0.024389	1	4147	4147		29.842	0	1	157660	+		42709	19083	29513	29564	48072	48072					0.1307539717254258
LLFALFLCL	9	Unmodified	_LLFALFLCL_					0	0	0		nc|ENSG00000220721|Q8NHA8|OR1F12P	nc|ENSG00000220721|Q8NHA8|OR1F12P	nc|ENSG00000220721|Q8NHA8|OR1F12P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2984619140625	2	526.814282	1051.61401	-1.3991	-0.00073709	1.0821	0.00057005	-0.31708	-0.00016704	526.8146058299342	38.604	0.67897	38.604	38.433	39.112	0					26	17	3	0	0	0	0.024475	1	3236	3236		21.702	4.3374	1	218600			42710	18728	29514	29565	48073	48073					0.09026824138436496
LLFALLLAM	9	Unmodified	_LLFALLLAM_					0	0	0		ENSG00000104499|ENST00000220940|GML	ENSG00000104499|ENST00000220940|GML	ENSG00000104499|ENST00000220940|GML	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.81353759765625	2	502.814282	1003.61401	0.44786	0.00022519	-1.6582	-0.00083378	-1.2104	-0.00060859	502.8135488206677	96.216	2.0121	96.08	95.682	97.694	-0.13671					136	45	5	0	0	0	0.93795	2	11937	11925;11937		29.842	0	1	16921000			42711	2576	29515	29566	48074;48075	48075					0.11234824138443855
LLFARFDAN	9	Unmodified	_LLFARFDAN_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7960815429688	2	533.787641	1065.56073	-0.86808	-0.00046337	-3.1859	-0.0017006	-4.0539	-0.0021639	533.785680009252	35.13	0.98793	35.174	34.794	35.782	0.04406					53	25	3	0	0	0	0.024436	1	2706	2706		30.504	0	1	843270	+		42712	28740	29516	29567	48076	48076					0.030571626801247476
LLFARPEEL	9	Unmodified	_LLFARPEEL_					0	0	0			REV__ENST00000263967.3_1_3:178866353-178916577:+|nuORF	REV__ENST00000263967.3_1_3:178866353-178916577:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.8206787109375	2	544.310949	1086.60735	-0.19426	-0.00010574	2.5381	0.0013815	2.3438	0.0012758	544.3121983011839	63.604	0.59105	63.346	63.122	63.713	-0.25824					22	15	2	0	0	0	0.02435	1	7234	7234		42.396	0	1	408730	+		42713	29702	29517	29568	48077	48077					0.06750602511419856
LLFASSTLTL	10	Unmodified	_LLFASSTLTL_					0	0	0			REV__FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	REV__FKTN|p.F369Sfs*37|1|0.28|ENSG00000106692|chr9:105619989-105619989|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7974853515625	2	533.313158	1064.61176	-1.0732	-0.00057233	2.7615	0.0014728	1.6884	0.00090043	533.3148496942983	90.352	0.53484	90.227	90.01	90.544	-0.12512					18	12	2	0	0	0	0.03519	1	11107	11107		11.511	0	1	155510	+		42714	21638	29518	29569	48078	48078					0.08204066934331422
LLFCCVWGGV	10	Unmodified	_LLFCCVWGGV_					0	0	0			REV__ENSG00000165409|ENST00000298171|TSHR	REV__ENSG00000165409|ENST00000298171|TSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8443603515625	2	548.769548	1095.52454	-0.71014	-0.00038971	2.2638	0.0012423	1.5537	0.00085261	548.7708332342893	45.278	0.45017	45.178	44.906	45.356	-0.099449					25	12	3	0	0	0	0.03519	1	4292	4292		19.36	0	1	281370	+		42715	25884	29519	29570	48079	48079					-0.019397538125986102
LLFDASFNL	9	Unmodified	_LLFDASFNL_					0	0	0			REV__ENST00000434365.1_1_X:114937188-114937365:+|nuORF	REV__ENST00000434365.1_1_X:114937188-114937365:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2744750976562	2	520.276575	1038.5386	0.30387	0.00015809	0.31525	0.00016402	0.61912	0.00032211	520.276637293016	17.252	1.885	17.109	16.895	18.78	-0.14278					65	39	4	0	0	0	0.62163	1	131	131		51.335	0	1	808860	+		42716	32420	29520	29571	48080	48080					0.020869382117098212
LLFDMTTH	8	Unmodified	_LLFDMTTH_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.8123474121094	2	489.241678	976.468803	-0.88482	-0.00043289	2.8779	0.001408	1.993	0.00097508	489.2430469911889	58.247	0.46431	58.072	57.859	58.323	-0.1749					19	12	2	0	0	0	0.027866	1	6541	6541		35.201	5.3592	1	342810			42717	3288	29521	29572	48081	48081					-0.02037263728561811
LLFDSVIHL	9	Unmodified	_LLFDSVIHL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2841186523438	2	528.808042	1055.60153	-0.37901	-0.00020042	4.318	0.0022834	3.939	0.002083	528.8080313490485	87.484	1.7794	87.484	86.69	88.47	0					116	42	4	0	0	0	0.023181	1	10991	10991		94.006	17.232	1	1236500			42718	3998	29522	29573	48082	48082					0.07595503999755238
LLFDSVIHL	9	Unmodified	_LLFDSVIHL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2846069335938	2	528.808042	1055.60153	0.058999	3.1199E-05	4.1457	0.0021923	4.2047	0.0022235	528.8077981535266	87.455	1.5258	87.42	86.899	88.425	-0.035355					128	36	6	0	0	0	0.023596	1	10956	10956		85.359	16.875	1	1146000			42719	3998	29522	29573	48083	48083					0.07595503999755238
LLFDSVIHL	9	Unmodified	_LLFDSVIHL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.8076171875	2	528.808042	1055.60153	-0.29571	-0.00015638	0.031525	1.6671E-05	-0.26419	-0.0001397	528.8079667184608	87.42	0.75024	87.241	86.944	87.695	-0.17875					36	17	3	0	0	0	0.36105	1	10637	10637		68.485	11.764	1	552550			42720	3998	29522	29573	48084	48084					0.07595503999755238
LLFDSVIHL	9	Unmodified	_LLFDSVIHL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.8073120117188	2	528.808042	1055.60153	0.18323	9.6896E-05	-0.62041	-0.00032808	-0.43718	-0.00023118	528.8076582206936	87.371	0.87148	87.234	86.926	87.798	-0.13613					46	20	3	0	0	0	0.25032	1	10639	10639		82.305	8.3303	1	582800			42721	3998	29522	29573	48085	48085					0.07595503999755238
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.8397827148438	2	581.839539	1161.66453	0.57481	0.00033445	-0.47429	-0.00027596	0.10052	5.8485E-05	581.8391421225297	74.359	0.9108	74.359	74.084	74.995	0					61	21	4	0	0	0	0.029455	1	9102	9102		155.58	40.091	1	1306000			42722	10673	29523	29574	48086	48086					0.09016024997140448
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.8401489257812	2	581.839539	1161.66453	-0.3528	-0.00020527	0.43772	0.00025468	0.084925	4.9412E-05	581.8396292177753	74.603	0.91177	74.344	74.071	74.983	-0.25887					61	21	4	0	0	0	0.13984	1	9103	9103		128.6	43.441	1	1385200			42723	10673	29523	29574	48087	48087					0.09016024997140448
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.8400268554688	2	581.839539	1161.66453	-0.39812	-0.00023164	0.47964	0.00027907	0.081519	4.7431E-05	581.8397057979867	74.377	0.75668	74.387	74.138	74.895	0.0096588					54	17	4	0	0	0	0.03397	2	9039	9027;9039		152.06	41.941	1	1201900			42724	10673	29523	29574	48088;48089	48089					0.09016024997140448
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	581.839539	1161.66453	-0.011942	-6.9481E-06	0.36933	0.00021489	0.35739	0.00020794	581.8392953591591	74.605	0.59578	74.329	74.001	74.597	-0.27573	0.021366	0.00016699	NaN	155.58	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241920			42725	10673	29523	29574							0.09016024997140448
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.839539	1161.66453	-0.53336	-0.00031033	1.0776	0.00062697	0.5442	0.00031664	581.8395372026838	74.534	0.43288	74.271	74.098	74.531	-0.26326	-0.036828	0.00099113	NaN	155.58	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196060			42726	10673	29523	29574							0.09016024997140448
LLFEGEKITI	10	Unmodified	_LLFEGEKITI_					0	0	0		nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	nc|ENSG00000285437|Q9H1A7|POLR2J3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.839539	1161.66453	0.037239	2.1667E-05	0.22666	0.00013188	0.2639	0.00015355	581.8396218338485	74.341	0.47214	74.158	73.961	74.434	-0.18279	-0.15021	9.619E-07	NaN	155.58	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187210			42727	10673	29523	29574							0.09016024997140448
LLFEGIARI	9	Unmodified	_LLFEGIARI_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.3160400390625	2	516.316035	1030.61752	-0.81148	-0.00041898	1.3443	0.00069407	0.53279	0.00027509	516.3159554282183	75.973	1.0153	75.973	75.622	76.637	0					52	25	3	0	0	0	0.1158	1	9360	9360		107.01	10.96	1	1460200			42728	2461	29524	29575	48090	48090					0.10343210236646883
LLFEGIARI	9	Unmodified	_LLFEGIARI_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.316035	1030.61752	-0.49848	-0.00025737	1.0069	0.00051986	0.50839	0.00026249	516.3157802558308	76.097	1.0574	75.868	75.633	76.691	-0.22843	-0.0062038	0.00015688	NaN	107.01	61	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1333700			42729	2461	29524	29575							0.10343210236646883
LLFEGIARI	9	Unmodified	_LLFEGIARI_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.316035	1030.61752	-0.21565	-0.00011134	0.57453	0.00029664	0.35888	0.00018529	516.3155866339965	75.95	1.0995	75.962	75.717	76.816	0.011635	0.087708	-0.00028957	NaN	107.01	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1391000			42730	2461	29524	29575							0.10343210236646883
LLFEGIARI	9	Unmodified	_LLFEGIARI_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.316035	1030.61752	-0.60571	-0.00031274	2.3412	0.0012088	1.7355	0.00089607	516.3157638052235	76.115	0.38107	75.843	75.582	75.964	-0.27266	-0.031679	0.0015348	NaN	107.01	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180160			42731	2461	29524	29575							0.10343210236646883
LLFEGIARI	9	Unmodified	_LLFEGIARI_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.316035	1030.61752	-0.048597	-2.5091E-05	0.72641	0.00037506	0.67781	0.00034996	516.3158258694272	76.1	0.30292	75.841	75.557	75.86	-0.25866	-0.033506	-0.00013274	NaN	107.01	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275700			42732	2461	29524	29575							0.10343210236646883
LLFEGIARI	9	Unmodified	_LLFEGIARI_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.316035	1030.61752	0.14762	7.6218E-05	-1.1276	-0.00058221	-0.98001	-0.00050599	516.3147307340281	75.934	0.41763	75.759	75.468	75.885	-0.17548	-0.11542	-0.0020473	NaN	107.01	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250080			42733	2461	29524	29575							0.10343210236646883
LLFELFYY	8	Unmodified	_LLFELFYY_					0	0	0			REV__GPNMB|p.G9E|1|0.36|ENSG00000136235|chr7:23246883-23246883|G/A|missense_variant	REV__GPNMB|p.G9E|1|0.36|ENSG00000136235|chr7:23246883-23246883|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.8302001953125	2	554.291694	1106.56883	0.4207	0.00023319	2.3974	0.0013288	2.8181	0.001562	554.2938056901154	88.747	0.34319	88.763	88.537	88.88	0.015907					11	7	2	0	0	0	0.027866	1	11123	11123		29.842	1.5873	1	37738	+		42734	36079	29525	29576	48091	48091					0.01981296876920169
LLFELQTI	8	Unmodified	_LLFELQTI_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|74|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|74|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|74|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.7899475097656	2	488.789318	975.564084	0.6985	0.00034142	-0.93533	-0.00045718	-0.23683	-0.00011576	488.78893072011454	100.45	0.37044	100.33	100.15	100.52	-0.12504					21	9	3	0	0	0	0.96719	1	12483	12483		42.474	1.9018	1	350540			42735	17813	29526	29577	48092	48092					0.075324127341446
LLFEQKPKS	9	Unmodified	_LLFEQKPKS_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3163452148438	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.72494	1	10968	10968		44.377	4.319	1	3529900	+		42736	20018	29527	29578	48093	48093					0.08222889028479585
LLFEQKPKS	9	Unmodified	_LLFEQKPKS_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3168334960938	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.80003	1	10586	10586		39.253	3.6345	1	4936700	+		42737	20018	29527	29578	48094	48094					0.08222889028479585
LLFEQKPKS	9	Unmodified	_LLFEQKPKS_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3172607421875	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.67244	2	11141	10851;11141		47.96	4.3087	1	17400000	+		42738	20018	29527	29578	48095;48096	48096					0.08222889028479585
LLFERVAQV	9	Unmodified	_LLFERVAQV_					0	0	0		ENST00000496369.1_1_2:62063126-62066596:-|nuORF	ENST00000496369.1_1_2:62063126-62066596:-|nuORF	ENST00000496369.1_1_2:62063126-62066596:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7759399414062	2	537.818941	1073.62333	-0.77983	-0.00041941	2.6799	0.0014413	1.9001	0.0010219	537.8195358367536	79.317	0.65793	79.335	79.11	79.768	0.018677					26	15	2	0	0	0	0.023635	1	9755	9755		76.774	0	1	162700			42739	15566	29528	29579	48097	48097					0.08946308748318188
LLFESVSSQNE	11	Unmodified	_LLFESVSSQNE_					0	0	0			REV__ENSG00000197233|ENST00000335302|OR1J2	REV__ENSG00000197233|ENST00000335302|OR1J2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	626.8064575195312	2	626.806425	1251.5983	-0.37953	-0.00023789	0.016332	1.0237E-05	-0.3632	-0.00022765	626.8067608866869	110.19	1.1048	110.19	109.85	110.96	0.0059204					73	37	3	0	0	0	1.0483	1	13906	13906		25.574	5.5773	1	106000	+		42740	28280	29529	29580	48098	48098					-0.01743835635556934
LLFEVAWEV	9	Unmodified	_LLFEVAWEV_					0	0	0		ENSG00000111713|ENST00000261195|GYS2	ENSG00000111713|ENST00000261195|GYS2	ENSG00000111713|ENST00000261195|GYS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.2816772460938	2	553.30005	1104.58555	-0.25315	-0.00014007	-0.31924	-0.00017664	-0.57239	-0.00031671	553.2997053644042	94.417	1.149	94.269	93.523	94.672	-0.14771					51	26	3	0	0	0	0.024506	1	11536	11536		23.042	0	1	618330			42741	3140	29530	29581	48099	48099					0.037437977628542285
LLFEWLYIT	9	Unmodified	_LLFEWLYIT_					0	0	0			REV__ENSG00000102034|ENST00000308167|ELF4;REV__nc|ENSG00000120690|P32519-2|ELF1	REV__ENSG00000102034|ENST00000308167|ELF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	598.8506469726562	2	599.33135	1196.64815	0.43081	0.0002582	-3.6685	-0.0021987	-3.2377	-0.0019405	599.3292604035546	96.973	0.58093	96.836	96.568	97.149	-0.1367					30	12	3	0	0	0	0.024386	1	11951	11951		33.516	16.151	1	247230	+		42742	21279;22548	29531	29582	48100	48100					0.05768943831026263
LLFFFMVI	8	Unmodified	_LLFFFMVI_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.281982421875	2	515.295725	1028.5769	-0.17399	-8.9655E-05	-2.6482	-0.0013646	-2.8222	-0.0014542	515.2947770280012	66.208	0.34605	65.927	65.788	66.134	-0.28148					12	8	3	0	0	0	0.027866	1	7825	7825		33.493	0	1	109530			42743	6165	29532	29583	48101	48101					0.06375152592681843
LLFFGVMFY	9	Unmodified	_LLFFGVMFY_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.287109375	2	568.796089	1135.57763	-0.76503	-0.00043515	0.87477	0.00049757	0.10974	6.2421E-05	568.7961016943259	69.139	0.70403	68.877	68.507	69.211	-0.26166					38	16	3	0	0	0	0.024389	1	8003	8003		39.021	7.0666	1	554740			42744	6248	29533	29584	48102	48102					0.015259472417483266
LLFFKDMLLTL	11	Unmodified	_LLFFKDMLLTL_					0	0	0		ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.9329833984375	3	451.933204	1352.77778	0.40681	0.00018385	-1.5681	-0.00070868	-1.1613	-0.00052483	451.93241469583455	98.661	2.0539	98.671	97.815	99.869	0.010239					182	47	5	0	0	0	1.0471	1	12645	12645		25.892	2.5138	1	1634100			42745	7482	29534	29585	48103	48103					0.11550377118692268
LLFFLFRLLLR	11	Unmodified	_LLFFLFRLLLR_					0	0	0		CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant;ENSG00000171954|ENST00000269703|CYP4F22	CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant	CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.79779052734375	3	484.314747	1449.92241	0.58019	0.000281	-4.2154	-0.0020416	-3.6352	-0.0017606	484.6475313403937	58.874	0.21598	58.874	58.714	58.93	0					10	5	3	0	0	0	0.024869	1	6691	6691		10.104	3.4443	1	78985			42746	616	29535	29586	48104	48104					0.21544806380848058
LLFFPEFF	8	Unmodified	_LLFFPEFF_					0	0	0		ENST00000258341.4_1_1:183114505-183114610:+|nuORF	ENST00000258341.4_1_1:183114505-183114610:+|nuORF	ENST00000258341.4_1_1:183114505-183114610:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2556762695312	2	530.281129	1058.54771	-0.86944	-0.00046105	4.3277	0.0022949	3.4582	0.0018338	530.2833540439464	28.946	0.57718	28.949	28.589	29.166	0.0031357					21	13	2	0	0	0	0.027866	1	1695	1695		46.766	22.262	1	117310			42747	11418	29536	29587	48105	48105					0.02077331568034424
LLFFSPLP	8	Unmodified	_LLFFSPLP_					0	0	0			REV__ENST00000478553.1_1_20:4764623-4764782:-|nuORF	REV__ENST00000478553.1_1_20:4764623-4764782:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2693176269531	2	467.275847	932.537141	-0.42311	-0.00019771	1.773	0.00082848	1.3499	0.00063077	467.27633964818926	43.087	0.3648	43.087	42.859	43.224	0					20	9	3	0	0	0	0.027866	1	3988	3988		39.021	10.767	1	165360	+		42748	33371	29537	29588	48106	48106					0.06817348913614296
LLFGASLDL	9	Unmodified	_LLFGASLDL_					0	0	0			REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.77362060546875	2	474.773668	947.532783	1.1535	0.00054764	-1.3124	-0.00062307	-0.15888	-7.5433E-05	474.77297582327463	99.198	1.0987	99.198	98.647	99.746	0					64	24	3	0	0	0	0.59099	1	12657	12657		53.351	9.2347	1	2194500	+		42749	22207	29538	29589	48107	48107					0.056918397000458754
LLFGFTGLL	9	Unmodified	_LLFGFTGLL_					0	0	0		ENSG00000235568|ENST00000329021|NFAM1	ENSG00000235568|ENST00000329021|NFAM1	ENSG00000235568|ENST00000329021|NFAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.74310302734375	2	490.794404	979.574254	-0.4233	-0.00020775	-1.1741	-0.00057623	-1.5974	-0.00078398	490.79373845507695	31.597	0.24005	31.597	31.509	31.749	0					7	5	2	0	0	0	0.024386	1	2112	2112		33.516	27.958	1	46583			42750	10731	29539	29590	48108	48108					0.08365020459370953
LLFGISFIP	9	Unmodified	_LLFGISFIP_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7509765625	2	503.802229	1005.5899	-0.062758	-3.1618E-05	-1.4796	-0.00074543	-1.5424	-0.00077705	503.8012934937239	33.805	0.52089	33.581	33.362	33.883	-0.22412					25	12	3	0	0	0	0.024466	1	2464	2464		33.516	0	1	297080			42751	6394	29540	29591	48109	48109					0.08733306976421318
LLFGVHAR	8	Unmodified	_LLFGVHAR_					0	0	0			REV__ENST00000258418.9_1_2:231683497-231683671:+|nuORF	REV__ENST00000258418.9_1_2:231683497-231683671:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.79742431640625	2	456.774337	911.534121	-1.2384	-0.00056566	3.3824	0.001545	2.144	0.00097931	456.7760612229663	65.1	0.49257	64.837	64.572	65.065	-0.2626					19	12	2	0	0	0	0.027866	1	7675	7675		26.796	6.3143	1	74910	+		42752	29578	29541	29592	48110	48110					0.07481518579459134
LLFHSLLV	8	Unmodified	_LLFHSLLV_					0	0	0			REV__ENST00000399683.7_1_20:3734467-3734644:-|nuORF	REV__ENST00000399683.7_1_20:3734467-3734644:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2929382324219	2	471.294571	940.574589	-0.11834	-5.5771E-05	-4.2294	-0.0019933	-4.3477	-0.002049	471.29258327038116	50.194	1.2249	50.194	49.805	51.03	0					106	35	4	0	0	0	0.82104	1	5278	5278		57.453	4.1012	1	24213000	+		42753	31837	29542	29593	48111	48111					0.10192440179230289
LLFIFPSVI	9	Unmodified	_LLFIFPSVI_					0	0	0			REV__ENSG00000181609|ENST00000322641|OR52D1	REV__ENSG00000181609|ENST00000322641|OR52D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.8270874023438	2	524.825704	1047.63685	-0.04084	-2.1434E-05	1.9855	0.0010421	1.9447	0.0010206	524.8266178770541	98.118	1.9254	97.953	97.397	99.322	-0.1652					155	45	5	0	0	0	0.88411	1	12138	12138		33.516	3.674	1	11527000	+		42754	27412	29543	29594	48112	48112					0.1149416652756372
LLFILVCEI	9	Unmodified	_LLFILVCEI_					0	0	0		ABCC8|p.V84I|1|0.36|ENSG00000006071|chr11:17474926-17474926|C/T|missense_variant	ABCC8|p.V84I|1|0.36|ENSG00000006071|chr11:17474926-17474926|C/T|missense_variant	ABCC8|p.V84I|1|0.36|ENSG00000006071|chr11:17474926-17474926|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.81689453125	2	531.817021	1061.61949	-0.018498	-9.8373E-06	-0.55332	-0.00029426	-0.57182	-0.0003041	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.96121	1	10853	10853		28.254	1.5614	1	3781500			42755	6	29544	29595	48113	48113					0.09114502930242452
LLFKRKGNM	9	Unmodified	_LLFKRKGNM_					0	0	0			REV__ENST00000373119.8_1_X:86919906-86921517:+|nuORF	REV__ENST00000373119.8_1_X:86919906-86921517:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8302612304688	2	553.828786	1105.64302	0.11487	6.3616E-05	2.002	0.0011087	2.1168	0.0011724	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	0.97516	1	11151	11151		25.45	2.4077	1	4870500	+		42756	31238	29545	29596	48114	48114					0.09442361487435846
LLFLALRSI	9	Unmodified	_LLFLALRSI_					0	0	0		nc|ENSG00000106113|Q13324-6|CRHR2;nc|ENSG00000106113|Q13324-5|CRHR2;nc|ENSG00000106113|Q13324-4|CRHR2;nc|ENSG00000106113|Q13324-3|CRHR2;nc|ENSG00000106113|Q13324-7|CRHR2;ENSG00000106113|ENST00000471646|CRHR2;nc|ENSG00000106113|Q13324-2|CRHR2	nc|ENSG00000106113|Q13324-6|CRHR2	nc|ENSG00000106113|Q13324-6|CRHR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3040161132812	2	523.342052	1044.66955	0.062191	3.2547E-05	4.1378	0.0021655	4.2	0.002198	523.3434192127186	87.208	0.21056	87.172	87.11	87.321	-0.035355					6	4	2	0	0	0	0.024539	1	10953	10953		27.882	0	1	50871			42757	2761	29546	29597	48115	48115					0.14900373650425536
LLFLEFRA	8	Unmodified	_LLFLEFRA_					0	0	0		ENST00000350498.7_1_7:98993965-98994055:-|nuORF	ENST00000350498.7_1_7:98993965-98994055:-|nuORF	ENST00000350498.7_1_7:98993965-98994055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.77142333984375	2	504.797478	1007.5804	-0.48671	-0.00024569	2.2086	0.0011149	1.7219	0.00086921	504.7987214870574	48.642	0.41727	48.709	48.452	48.87	0.066795					24	11	3	0	0	0	0.027866	1	4936	4936		19.36	4.6959	1	257740			42758	12592	29547	29598	48116	48116					0.07691538690903599
LLFLIRVDS	9	Unmodified	_LLFLIRVDS_					0	0	0		ENSG00000181733|ENST00000641125|OR2Z1	ENSG00000181733|ENST00000641125|OR2Z1	ENSG00000181733|ENST00000641125|OR2Z1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3245239257812	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	0.77768	1	12834	12834		40.778	5.1599	1	22353000			42759	9064	29548	29599	48117	48117					0.10939479408125408
LLFLKANL	8	Unmodified	_LLFLKANL_					0	0	0		ENST00000343855.5_1_7:150028109-150028460:+|nuORF	ENST00000343855.5_1_7:150028109-150028460:+|nuORF	ENST00000343855.5_1_7:150028109-150028460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7693176269531	2	466.302396	930.590239	0.2346	0.00010939	-0.23857	-0.00011125	-0.0039747	-1.8534E-06	466.3021763079883	73.978	0.55969	73.988	73.837	74.397	0.0096512					24	12	3	0	0	0	0.027866	1	8960	8960		37.028	0	1	252130			42760	12535	29549	29600	48118	48118					0.12216726696260594
LLFLLGKLA	9	Unmodified	_LLFLLGKLA_					0	0	0			REV__TTYH1|p.E390K|1|0.08|ENSG00000167614|chr19:54435584-54435584|G/A|missense_variant	REV__TTYH1|p.E390K|1|0.08|ENSG00000167614|chr19:54435584-54435584|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3353576660156	2	494.333696	986.652839	0.062182	3.0739E-05	2.6418	0.0013059	2.704	0.0013367	494.3344720782167	106.14	0.54523	106.14	105.73	106.27	0.00014496					29	20	2	0	0	0	1.0051	1	13550	13550		19.36	3.7238	1	165290	+		42761	37744	29550	29601	48119	48119					0.15897872764469412
LLFLLGKLA	9	Unmodified	_LLFLLGKLA_					0	0	0			REV__TTYH1|p.E390K|1|0.08|ENSG00000167614|chr19:54435584-54435584|G/A|missense_variant	REV__TTYH1|p.E390K|1|0.08|ENSG00000167614|chr19:54435584-54435584|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.333696	986.652839	-0.97283	-0.0004809	7.7562	0.0038342	6.7834	0.0033533	494.337507790128	106.23	0.22865	106.1	105.96	106.18	-0.13279	0.0069493	0.0014167	NaN	19.36	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62083	+		42762	37744	29550	29601							0.15897872764469412
LLFLLLWF	8	Unmodified	_LLFLLLWF_					0	0	0			REV__ENSG00000124212|ENST00000244043|PTGIS	REV__ENSG00000124212|ENST00000244043|PTGIS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7576293945312	2	532.830789	1063.64703	-0.5128	-0.00027324	3.5185	0.0018747	3.0057	0.0016015	532.832557879127	59.024	0.83491	58.836	58.431	59.265	-0.18795					47	20	3	0	0	0	0.027866	1	6480	6480		24.504	2.8017	1	1328100	+		42763	22748	29551	29602	48120	48120					0.11774774252785392
LLFLPQATY	9	Unmodified	_LLFLPQATY_					0	0	0			REV__ENST00000527328.5_1_8:145537548-145537990:+|nuORF	REV__ENST00000527328.5_1_8:145537548-145537990:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.8192138671875	2	533.302593	1064.59063	-0.078615	-4.1926E-05	-2.6862	-0.0014326	-2.7648	-0.0014745	533.3008024811801	70.282	0.36522	70.068	69.73	70.096	-0.21424					11	8	2	0	0	0	0.024541	1	8130	8130		17.365	3.5896	1	162420	+		42764	27737	29552	29603	48121	48121					0.060921016254724236
LLFLVLPP	8	Unmodified	_LLFLVLPP_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7428283691406	2	456.301865	910.589176	-0.27662	-0.00012622	-1.6162	-0.00073746	-1.8928	-0.00086368	456.3009972415275	46.088	0.86607	45.827	45.557	46.423	-0.26118					52	22	3	0	0	0	0.027866	1	4381	4381		33.493	8.989	1	487590	+		42765	27810	29553	29604	48122	48122					0.1303051232736152
LLFLVLPP	8	Unmodified	_LLFLVLPP_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	456.301865	910.589176	0.42285	0.00019295	-2.219	-0.0010126	-1.7962	-0.00081961	456.3006978254658	45.988	1.321	45.988	45.375	46.696	0	0.12938	-0.00040552	NaN	33.493	75	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357730	+		42766	27810	29553	29604							0.1303051232736152
LLFLVLPP	8	Unmodified	_LLFLVLPP_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	456.301865	910.589176	-0.77769	-0.00035486	-1.4455	-0.0006596	-2.2232	-0.0010145	456.30126675608693	46.037	1.2056	45.885	45.309	46.515	-0.15157	0.026993	0.00030039	NaN	33.493	70	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428210	+		42767	27810	29553	29604							0.1303051232736152
LLFLVLPP	8	Unmodified	_LLFLVLPP_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.301865	910.589176	0.09884	4.5101E-05	-1.7197	-0.00078468	-1.6208	-0.00073958	456.30090484495605	45.938	1.0696	45.99	45.689	46.758	0.051395	0.13137	5.0228E-05	NaN	33.493	72	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566530	+		42768	27810	29553	29604							0.1303051232736152
LLFLVLPP	8	Unmodified	_LLFLVLPP_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.301865	910.589176	-0.72899	-0.00033264	-1.3038	-0.00059495	-2.0328	-0.00092758	456.3010947439995	45.917	0.84213	45.715	45.458	46.3	-0.20226	-0.14331	0.0004297	NaN	33.493	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720000	+		42769	27810	29553	29604							0.1303051232736152
LLFLVVKNI	9	Unmodified	_LLFLVVKNI_					0	0	0			REV__ENST00000341307.6_1_11:63526292-63526517:+|nuORF	REV__ENST00000341307.6_1_11:63526292-63526517:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8195190429688	2	529.852253	1057.68995	0.58469	0.0003098	-3.6856	-0.0019528	-3.1009	-0.001643	529.8499106096621	19.828	0.24633	19.628	19.554	19.801	-0.2001					5	4	2	0	0	0	0.024541	1	459	459		11.511	0	1	8229.1	+		42770	30634	29554	29605	48123	48123					0.16341544310216705
LLFMGITVK	9	Unmodified	_LLFMGITVK_					0	0	0			REV__nc|ENSG00000167106|Q5T9C2-2|EEIG1	REV__nc|ENSG00000167106|Q5T9C2-2|EEIG1	MSMS	OPSCC_39_ClassI_Rep-1	1	511.30859375	2	511.309364	1020.60417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	107.48	106.98	107.98	0								0	0	0	0.47068	1	13808	13808		56.721	7.2795	1		+		42771	26105	29555	29606	48124	48124					0.09469636133053427
LLFNEGLT	8	Unmodified	_LLFNEGLT_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62728346-62728628:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.77386474609375	2	453.750193	905.485833	0.88877	0.00040328	3.4279	0.0015554	4.3167	0.0019587	453.7499728053851	71.732	0.60085	71.732	71.377	71.978	0					42	15	4	0	0	0	0.027866	1	8742	8742		35.618	0	1	184570			42772	9588	29556	29607	48125	48125					0.029309801489034726
LLFNICLPD	9	Unmodified	_LLFNICLPD_					0	0	0		ENSG00000164893|ENST00000297524|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2959594726562	2	524.280803	1046.54705	-0.94179	-0.00049376	-4.1983	-0.0022011	-5.1401	-0.0026949	524.7787975159315	51.284	0.35061	51.371	51.227	51.577	0.087006					16	9	2	0	0	0	0.024323	1	5387	5387		44.117	12.587	1	91730			42773	7336	29557	29608	48126	48126					0.025641688566793164
LLFPESIRV	9	Unmodified	_LLFPESIRV_					0	0	0		ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	ENSG00000197226|ENST00000355235|TBC1D9B	ENSG00000197226|ENST00000355235|TBC1D9B	MSMS	OPSCC_39_ClassI_Rep-2	2	537.3208618164062	2	537.321317	1072.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.974	1	73.703	73.203	74.203	-0.27126								0	0	0	0.39148	1	9009	9009		62.107	6.6032	1				42774	9972	29558	29609	48127	48127					0.09467192891088416
LLFPHYVTT	9	Unmodified	_LLFPHYVTT_					0	0	0			REV__ENST00000415792.5_1_2:114647705-114688890:+|nuORF	REV__ENST00000415792.5_1_2:114647705-114688890:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2824096679688	2	545.800217	1089.58588	-2.1219	-0.0011581	-0.040948	-2.235E-05	-2.1629	-0.0011805	546.3012058436574	51.974	0.58089	51.705	51.4	51.981	-0.26903					40	15	4	0	0	0	0.024466	1	5315	5315		18.324	0	1	392630	+		42775	32062	29559	29610	48128	48128					0.044672174827155686
LLFPLHPF	8	Unmodified	_LLFPLHPF_					0	0	0			REV__TNFRSF10D|p.K371Sfs*46|1|0.26|ENSG00000173530|chr8:23137919-23137919|T/-|frameshift_variant	REV__TNFRSF10D|p.K371Sfs*46|1|0.26|ENSG00000173530|chr8:23137919-23137919|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2724609375	2	492.289288	982.564024	-0.99586	-0.00049025	4.0257	0.0019818	3.0298	0.0014916	492.2910640752838	24.216	0.43905	24.168	23.869	24.308	-0.047148					13	9	2	0	0	0	0.027866	1	988	988		16.705	0	1	76179	+		42776	37712	29560	29611	48129	48129					0.07204457524790087
LLFPLHPF	8	Unmodified	_LLFPLHPF_					0	0	0			REV__TNFRSF10D|p.K371Sfs*46|1|0.26|ENSG00000173530|chr8:23137919-23137919|T/-|frameshift_variant	REV__TNFRSF10D|p.K371Sfs*46|1|0.26|ENSG00000173530|chr8:23137919-23137919|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.289288	982.564024	-0.29654	-0.00014598	3.008	0.0014808	2.7114	0.0013348	492.29085352435266	24.159	0.30315	24.159	23.994	24.297	0	-0.0082329	5.2677E-06	NaN	16.705	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65961	+		42777	37712	29560	29611							0.07204457524790087
LLFPRLVK	8	Unmodified	_LLFPRLVK_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;REV__ENSG00000080503|ENST00000349721|SMARCA2;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP;REV__nc|ENSG00000127616|P51532-5|SMARCA4	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3057556152344	2	493.331488	984.648422	-0.57458	-0.00028346	1.9142	0.00094434	1.3396	0.00066088	493.3328593390834	85.031	0.2057	85.057	84.953	85.159	0.025536					7	4	2	0	0	0	0.027866	1	10595	10595		28.254	0	1	28540	+		42778	37579;20657;20655;22943	29561	29612	48130	48130					0.1554840834156721
LLFPSLKKN	9	Unmodified	_LLFPSLKKN_					0	0	0		ENST00000528443.6_1_1:179888013-179888181:+|nuORF	ENST00000528443.6_1_1:179888013-179888181:+|nuORF	ENST00000528443.6_1_1:179888013-179888181:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.27783203125	2	530.331685	1058.64882	-0.3986	-0.00021139	0.26205	0.00013897	-0.13656	-7.242E-05	530.3316450493704	79.535	1.2075	79.554	79.233	80.44	0.018677					41	28	2	0	0	0	0.021513	1	9917	9917		93.195	8.2799	1	571180			42779	16182	29562	29613	48131	48131					0.12183783270756976
LLFPSLKKN	9	Unmodified	_LLFPSLKKN_					0	0	0		ENST00000528443.6_1_1:179888013-179888181:+|nuORF	ENST00000528443.6_1_1:179888013-179888181:+|nuORF	ENST00000528443.6_1_1:179888013-179888181:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.331685	1058.64882	-1.4359	-0.00076152	1.3318	0.00070629	-0.10414	-5.5228E-05	530.3321965514888	79.635	0.75337	79.463	79.15	79.904	-0.17226	0.089197	0.0010327	NaN	93.195	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618520			42780	16182	29562	29613							0.12183783270756976
LLFPVRLF	8	Unmodified	_LLFPVRLF_					0	0	0		L1MEd_dup14839|chr11:12978246-12978514:+|1.1627743790377367|0.1235672442981885|3.23|506.0|20|3|anti-sense	L1MEd_dup14839|chr11:12978246-12978514:+|1.1627743790377367|0.1235672442981885|3.23|506.0|20|3|anti-sense	L1MEd_dup14839|chr11:12978246-12978514:+|1.1627743790377367|0.1235672442981885|3.23|506.0|20|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.25372314453125	2	502.818213	1003.62187	-1.1894	-0.00059804	-3.0513	-0.0015342	-4.2406	-0.0021323	502.81639742384397	44.723	0.72121	44.574	44.288	45.009	-0.1488					33	20	2	0	0	0	0.027866	1	4269	4269		37.028	0	1	432810			42781	17838	29563	29614	48132	48132					0.12020719450219985
LLFPVTIFV	9	Unmodified	_LLFPVTIFV_					0	0	0			REV__nc|ENSG00000174970|Q8NH19|OR10AG1	REV__nc|ENSG00000174970|Q8NH19|OR10AG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8270263671875	2	524.825704	1047.63685	0.5509	0.00028913	1.4687	0.00077083	2.0196	0.00106	524.8263320992579	98.046	2.2952	97.91	97.423	99.718	-0.13625					172	55	6	0	0	0	0.96855	1	12169	12169		26.796	0	1	14595000	+		42782	26910	29564	29615	48133	48133					0.1149416652756372
LLFPVWLD	8	Unmodified	_LLFPVWLD_					0	0	0		ENST00000485124.1_1_3:12779155-12780073:-|nuORF	ENST00000485124.1_1_3:12779155-12780073:-|nuORF	ENST00000485124.1_1_3:12779155-12780073:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7927551269531	2	501.786579	1001.5586	0.091028	4.5677E-05	-4.3034	-0.0021594	-4.2124	-0.0021137	501.78447724028933	52.803	0.83743	52.656	52.366	53.203	-0.14723					23	14	2	0	0	0	0.027866	1	5630	5630		28.254	0	1	609920			42783	15321	29565	29616	48134	48134					0.057887339423245976
LLFQIILA	8	Unmodified	_LLFQIILA_					0	0	0		nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.80450439453125	2	465.804771	929.59499	-0.58301	-0.00027157	0.77508	0.00036104	0.19207	8.9469E-05	465.80500292390263	84.385	1.7109	84.312	83.917	85.628	-0.072769					111	40	4	0	0	0	0.61897	1	10566	10566		74.517	1.8967	1	3225700			42784	1226	29566	29617	48135	48135					0.1273761083904219
LLFQTETLS	9	Unmodified	_LLFQTETLS_					0	0	0			REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2867431640625	2	526.28714	1050.55973	-1.7575	-0.00092495	3.0433	0.0016017	1.2858	0.00067671	526.2886363560979	60.407	0.71285	60.486	60.242	60.955	0.078888					43	14	4	0	0	0	0.20967	1	6869	6869		87.754	1.8451	1	5224500	+		42785	31632	29567	29618	48136	48136					0.036469035205982436
LLFQTETLS	9	Unmodified	_LLFQTETLS_					0	0	0			REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.28714	1050.55973	-0.88072	-0.00046351	1.9948	0.0010498	1.114	0.00058631	526.2881541206787	60.764	0.60015	60.55	60.273	60.873	-0.21339	0.027118	0.00035517	NaN	87.754	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3819200	+		42786	31632	29567	29618							0.036469035205982436
LLFQTETLS	9	Unmodified	_LLFQTETLS_					0	0	0			REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	526.28714	1050.55973	-1.7575	-0.00092495	3.0433	0.0016017	1.2858	0.00067671	526.2886363560979	60.407	0.71285	60.486	60.242	60.955	0.078888	-0.037232	0.0014588	NaN	87.754	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5224500	+		42787	31632	29567	29618							0.036469035205982436
LLFQTETLS	9	Unmodified	_LLFQTETLS_					0	0	0			REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.28714	1050.55973	-1.0672	-0.00056163	1.0478	0.00055144	-0.019375	-1.0197E-05	526.2874022832959	60.659	1.0911	60.483	60.239	61.33	-0.1761	-0.040356	-0.00064159	NaN	87.754	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	976110	+		42788	31632	29567	29618							0.036469035205982436
LLFQTETLS	9	Unmodified	_LLFQTETLS_					0	0	0			REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	REV__ENST00000393087.8_1_14:94848946-94848997:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.28714	1050.55973	-0.69474	-0.00036563	0.63359	0.00033345	-0.061151	-3.2183E-05	526.2872195460391	60.867	1.1327	60.613	60.294	61.427	-0.25374	0.089888	-0.0010776	NaN	87.754	53	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1123800	+		42789	31632	29567	29618							0.036469035205982436
LLFRFYLF	8	Unmodified	_LLFRFYLF_					0	0	0		ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.7568359375	2	559.823495	1117.63244	0.43613	0.00024415	3.534	0.0019784	3.9702	0.0022226	560.3274693555227	71.236	0.87373	71.03	70.703	71.577	-0.20613					39	20	3	0	0	0	0.027866	1	8346	8346		28.254	0	1	273430			42790	6675	29568	29619	48137	48137					0.07832702104656164
LLFRGLRRHP	10	Unmodified	_LLFRGLRRHP_					0	0	0			REV__ENST00000608402.1_1_4:140478044-140478398:+|nuORF	REV__ENST00000608402.1_1_4:140478044-140478398:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	632.8650512695312	2	632.891098	1263.76764	-1.2751	-0.00080698	2.6574	0.0016819	1.3824	0.00087489	632.8925938521663	105.47	0.43983	105.34	105.09	105.53	-0.13099					25	11	3	0	0	0	0.03519	1	13110	13110		16.473	0	1	948130	+		42791	35968	29569	29620	48138	48138					0.14630995018978865
LLFRVLLQ	8	Unmodified	_LLFRVLLQ_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7929992675781	2	501.328945	1000.64334	-0.46182	-0.00023152	0.079998	4.0105E-05	-0.38182	-0.00019142	501.32895160815815	52.112	0.60259	51.994	51.719	52.322	-0.11875					27	15	2	0	0	0	0.027866	1	5363	5363		65.803	23.407	1	278500			42792	2480;18139	29570	29621	48139	48139					0.14304104478935642
LLFRVLLQ	8	Unmodified	_LLFRVLLQ_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.79302978515625	2	501.328945	1000.64334	-1.3926	-0.00069814	1.2468	0.00062504	-0.14582	-7.3105E-05	501.32939704647066	52.412	0.5622	52.143	51.831	52.393	-0.26903					27	14	2	0	0	0	0.027866	1	5392	5392		55.504	9.5523	1	319380			42793	2480;18139	29570	29621	48140	48140					0.14304104478935642
LLFRVLLQ	8	Unmodified	_LLFRVLLQ_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.79296875	2	501.328945	1000.64334	-0.39391	-0.00019748	-0.16531	-8.2877E-05	-0.55923	-0.00028036	501.32872796452097	52.275	0.60851	52.091	51.705	52.314	-0.18404					25	15	2	0	0	0	0.027866	1	5356	5356		65.803	0	1	224900			42794	2480;18139	29570	29621	48141	48141					0.14304104478935642
LLFSAVTT	8	Unmodified	_LLFSAVTT_					0	0	0			REV__ANKRD49|p.R155T|1|0.15|ENSG00000168876|chr11:94498276-94498276|G/C|missense_variant	REV__ANKRD49|p.R155T|1|0.15|ENSG00000168876|chr11:94498276-94498276|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2461853027344	2	426.247286	850.48002	0.074352	3.1692E-05	-2.919	-0.0012442	-2.8446	-0.0012125	426.24594874726847	86.792	1.9596	86.792	86.085	88.044	0					116	46	5	0	0	0	1.0572	1	10878	10878		28.254	0	1	11239000	+		42795	19145	29571	29622	48142	48142					0.04879881637236849
LLFSRKDSE	9	Unmodified	_LLFSRKDSE_					0	0	0			REV__nc|ENSG00000215301|O00571-2|DDX3X	REV__nc|ENSG00000215301|O00571-2|DDX3X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.7147216796875	2	547.795663	1093.57677	-1.0762	-0.00058955	-0.65489	-0.00035875	-1.7311	-0.0009483	547.7955078377868	44.229	0.3604	43.984	43.79	44.151	-0.2444					23	9	3	0	0	0	0.024412	1	4115	4115		31.955	7.7521	1	322990	+		42796	28804	29572	29623	48143	48143					0.03372824126381602
LLFSVGMIL	9	Unmodified	_LLFSVGMIL_					0	0	0		nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7744445800781	2	496.796089	991.577625	0.24457	0.0001215	-2.1818	-0.0010839	-1.9373	-0.00096243	496.79614468365344	77.89	0.20851	77.89	77.792	78.001	0					6	4	2	0	0	0	0.024517	1	9627	9627		19.36	3.7238	1	21722			42797	1744	29573	29624	48144	48144					0.08149947241747668
LLFTNNSEL	9	Unmodified	_LLFTNNSEL_					0	0	0			REV__ENSG00000102384|ENST00000682095|CENPI	REV__ENSG00000102384|ENST00000682095|CENPI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7766723632812	2	525.776939	1049.53933	-0.31531	-0.00016578	-0.066892	-3.517E-05	-0.3822	-0.00020095	525.7768557932674	73.817	1.2161	73.826	73.598	74.814	0.0096512					58	28	3	0	0	0	0.03849	1	8954	8954		134.81	13.942	1	1843500	+		42798	21306	29574	29625	48145	48145					0.016537328607682866
LLFTNRKK	8	Unmodified	_LLFTNRKK_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.3098449707031	2	510.321651	1018.62875	-0.16024	-8.1775E-05	3.6839	0.00188	3.5236	0.0017982	510.32382392948756	77.111	0.38297	77.124	77.021	77.404	0.013504					14	8	3	0	0	0	0.027866	1	9436	9436		26.693	0	1	575360	+		42799	23808	29575	29626	48146	48146					0.12018032330797723
LLFTYVVF	8	Unmodified	_LLFTYVVF_					0	0	0			REV__ENSG00000132671|ENST00000255008|SSTR4	REV__ENSG00000132671|ENST00000255008|SSTR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2820739746094	2	501.288954	1000.56336	1.1127	0.00055778	3.6037	0.0018065	4.7164	0.0023643	501.289903203083	96.758	1.1548	96.758	95.992	97.147	-3.8147E-05					52	26	3	0	0	0	0.027866	1	12314	12314		54.765	14.192	1	240350	+		42800	23307	29576	29627	48147	48147					0.06309618085094826
LLFVDNSNL	9	Unmodified	_LLFVDNSNL_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.28759765625	2	517.779482	1033.54441	0.038187	1.9773E-05	4.2843	0.0022183	4.3224	0.0022381	517.7811427064194	49.734	0.59969	49.629	49.411	50.011	-0.10558					27	15	3	0	0	0	0.024436	1	4980	4980		38.806	10.924	1	914560	+		42801	23540	29577	29628	48148	48148					0.028980367233771176
LLFVFGRF	8	Unmodified	_LLFVFGRF_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80078125	2	499.794738	997.574923	-0.23264	-0.00011627	4.3596	0.0021789	4.1269	0.0020626	500.29842663852895	31.556	0.24011	31.625	31.406	31.646	0.068962					8	5	2	0	0	0	0.027866	1	2042	2042		28.254	1.4582	1	52211	+		42802	19975	29578	29629	48149	48149					0.07603859899097642
LLFVFGRF	8	Unmodified	_LLFVFGRF_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.794738	997.574923	-0.41529	-0.00020756	4.8183	0.0024082	4.403	0.0022006	499.7962866545903	31.954	0.20042	31.966	31.823	32.023	0.011799	0.17033	0.00023051	NaN	28.254	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23461	+		42803	19975	29578	29629							0.07603859899097642
LLFVNVINL	9	Unmodified	_LLFVNVINL_					0	0	0		ENST00000319074.5_1_14:23567332-23567638:+|nuORF	ENST00000319074.5_1_14:23567332-23567638:+|nuORF	ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3023681640625	2	522.826235	1043.63792	-0.50654	-0.00026483	1.0915	0.00057067	0.58497	0.00030584	522.8263642533775	69.469	0.94106	69.485	69.014	69.955	0.015129					34	23	2	0	0	0	0.024436	1	8252	8252		47.916	15.961	1	824620			42804	12177	29579	29630	48150	48150					0.11784380896460789
LLFVSEIDI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LLFVSEIDI_					1	0	0		ENST00000428221.5_1_2:11586145-11586385:-|nuORF	ENST00000428221.5_1_2:11586145-11586385:-|nuORF	ENST00000428221.5_1_2:11586145-11586385:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.802734375	2	545.805165	1089.59578	-1.3623	-0.00074355	-1.7509	-0.00095566	-3.1132	-0.0016992	545.8041091018016	45.14	0.88728	44.991	44.628	45.515	-0.1488					73	25	4	0	0	0	0.36105	2	4331	4331;4343		68.485	11.852	1	5227900			42805	14130	29580	29631	48151;48152	48151					0.05456360697439777
LLFVSEIDI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LLFVSEIDI_					1	0	0		ENST00000428221.5_1_2:11586145-11586385:-|nuORF	ENST00000428221.5_1_2:11586145-11586385:-|nuORF	ENST00000428221.5_1_2:11586145-11586385:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.8034057617188	2	545.805165	1089.59578	-0.95595	-0.00052176	-2.2415	-0.0012234	-3.1975	-0.0017452	545.8037826783913	45.015	0.82416	45.059	44.722	45.546	0.04388					69	23	4	0	0	0	0.55828	1	4279	4279		55.504	7.5886	1	4477700			42806	14130	29580	29631	48153	48153					0.05456360697439777
LLFWVWTV	8	Unmodified	_LLFWVWTV_					0	0	0		ENST00000404894.1_1_7:12727886-12728018:+|nuORF	ENST00000404894.1_1_7:12727886-12728018:+|nuORF	ENST00000404894.1_1_7:12727886-12728018:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7808837890625	2	532.302396	1062.59024	-0.37572	-0.0002	2.0106	0.0010702	1.6348	0.00087022	532.3038509396187	65.82	0.70318	65.578	65.085	65.789	-0.24145					24	16	2	0	0	0	0.027866	1	7461	7461		20.482	0	1	352800			42807	13707	29581	29632	48154	48154					0.06144726696265934
LLFYGSLIT	9	Unmodified	_LLFYGSLIT_					0	0	0			REV__ENST00000435074.5_1_6:33080250-33086274:+|nuORF	REV__ENST00000435074.5_1_6:33080250-33086274:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.8098754882812	2	513.797143	1025.57973	-1.4366	-0.00073812	-1.7189	-0.00088316	-3.1555	-0.0016213	514.2978981986946	37.983	0.63452	38.01	37.596	38.23	0.027279					27	17	3	0	0	0	0.024436	1	3125	3125		23.042	6.5693	1	123210	+		42808	32435	29582	29633	48155	48155					0.067966992511856
LLGAALWAR	9	Unmodified	_LLGAALWAR_					0	0	0			REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7841491699219	2	485.795269	969.575986	-0.19583	-9.5134E-05	-0.78278	-0.00038027	-0.97862	-0.00047541	485.7944895936912	101.37	0.43239	101.38	101.13	101.56	0.0090332					13	9	2	0	0	0	0.024517	1	12921	12921		7.6903	0	1	66124	+		42809	23973	29583	29634	48156	48156					0.08998074267969969
LLGAALWAR	9	Unmodified	_LLGAALWAR_					0	0	0			REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.795269	969.575986	-0.25114	-0.000122	-1.0685	-0.00051907	-1.3196	-0.00064107	485.79454929762693	101.35	0.44341	101.35	101.24	101.68	0	-0.016276	-9.2922E-05	NaN	12.207	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74773	+		42810	23973	29583	29634							0.08998074267969969
LLGAARAGAL	10	Unmodified	_LLGAARAGAL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.P880Lfs*20|1|0.31|ENSG00000004399|chr3:129574384-129574384|C/-|frameshift_variant	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MSMS	OPSCC_40_ClassI_Rep-3	6	456.7823486328125	2	456.784902	911.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.335	1	49.153	48.653	49.653	-0.18206								0	0	0	0.20996	1	4943	4943		88.643	17.265	1				42811	738	29584	29635	48157	48157					0.09593483888306764
LLGAGYAKV	9	Unmodified	_LLGAGYAKV_					0	0	0			REV__nc|ENSG00000180176|P07101-6|TH	REV__nc|ENSG00000180176|P07101-6|TH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.25860595703125	2	446.268553	890.522553	0.13239	5.9083E-05	0.24788	0.00011062	0.38027	0.0001697	446.2685245340841	42.671	0.54113	42.697	42.393	42.934	0.026016					28	14	3	0	0	0	0.024412	1	3865	3865		31.955	1.4512	1	282520	+		42812	27317	29585	29636	48158	48158					0.07291276765465682
LLGAIISCLV	10	Unmodified	_LLGAIISCLV_					0	0	0			REV__nc|ENSG00000268758|Q86SQ3|ADGRE4P	REV__nc|ENSG00000268758|Q86SQ3|ADGRE4P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.30682373046875	2	501.306821	1000.59909	-0.50479	-0.00025305	-3.1581	-0.0015832	-3.6628	-0.0018362	501.3049935765431	97.031	1.2098	96.87	96.55	97.76	-0.16106					37	26	2	0	0	0	0.03519	1	11948	11948		31.955	16.313	1	190650	+		42813	37196	29586	29637	48159	48159					0.09881332270447274
LLGAIYAF	8	Unmodified	_LLGAIYAF_					0	0	0			REV__GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant	REV__GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2740783691406	2	434.252372	866.49019	-0.18676	-8.11E-05	2.5419	0.0011038	2.3551	0.0010227	434.2536316183086	47.901	0.2215	47.748	47.574	47.795	-0.15301					9	6	2	0	0	0	0.027866	1	4819	4819		10.185	0	1	80510	+		42814	25205	29587	29638	48160	48160					0.05160489362469889
LLGALPPRRRC	11	Unmodified	_LLGALPPRRRC_					0	0	0			REV__ENSG00000187650|ENST00000339485|VMAC	REV__ENSG00000187650|ENST00000339485|VMAC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	626.3802490234375	2	626.376966	1250.73938	-0.014204	-8.8969E-06	4.3987	0.0027553	4.3845	0.0027464	626.3796706228852	104.33	1.1031	104.33	103.94	105.04	0					82	30	5	0	0	0	1.0499	1	13415	13415		15.642	0	1	2455700	+		42815	27955	29588	29639	48161	48161					0.1240392904737746
LLGANKIALP	10	Unmodified	_LLGANKIALP_					0	0	0			REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.8253173828125	2	505.32386	1008.63317	-0.41311	-0.00020875	-0.55573	-0.00028082	-0.96884	-0.00048958	505.3239398964379	79.056	3.538	79.056	78.616	82.154	0					279	85	6	0	0	0	0.65054	2	9916	9860;9916		71.296	21.271	1	98664000	+		42816	27847	29589	29640	48162;48163	48163					0.12919496753693238
LLGANKIALP	10	Unmodified	_LLGANKIALP_					0	0	0			REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3187255859375	2	505.32386	1008.63317	-0.021531	-1.088E-05	-1.0461	-0.00052863	-1.0676	-0.00053951	505.32367507392587	79.153	5.1565	79.172	78.693	83.85	0.018677					323	123	5	0	0	0	0.79525	5	9840	9790;9814;9833;9840;9846		60.972	19.836	1	98007000	+		42817	27847	29589	29640	48164;48165;48166;48167;48168	48167					0.12919496753693238
LLGANKIALP	10	Unmodified	_LLGANKIALP_					0	0	0			REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.3239440917969	2	505.32386	1008.63317	0.43061	0.0002176	-1.1927	-0.00060271	-0.76212	-0.00038512	505.3233501309143	79.104	3.6681	78.849	78.471	82.139	-0.25471					219	87	5	0	0	0	1.0142	2	9501	9488;9501		44.117	6.9577	1	36200000	+		42818	27847	29589	29640	48169;48170	48170					0.12919496753693238
LLGANKIALP	10	Unmodified	_LLGANKIALP_					0	0	0			REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3219299316406	2	505.32386	1008.63317	0.12083	6.106E-05	-0.87121	-0.00044024	-0.75037	-0.00037918	505.32350651286185	79.073	3.4594	78.842	78.346	81.805	-0.23141					204	82	5	0	0	0	1.0142	1	9527	9527		44.117	3.5442	1	35664000	+		42819	27847	29589	29640	48171	48171					0.12919496753693238
LLGANKIALP	10	Unmodified	_LLGANKIALP_					0	0	0			REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	REV__nc|ENSG00000186334|Q495N2-3|SLC36A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.3215026855469	2	505.32386	1008.63317	-0.071224	-3.5991E-05	-0.74214	-0.00037502	-0.81337	-0.00041101	505.32356722396315	78.994	3.687	78.843	78.432	82.119	-0.15051					219	87	6	0	0	0	0.65054	2	9500	9486;9500		71.296	18.359	1	35565000	+		42820	27847	29589	29640	48172;48173	48173					0.12919496753693238
LLGAQVRP	8	Unmodified	_LLGAQVRP_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.26611328125	2	427.266345	852.518136	0.057993	2.4779E-05	0.32013	0.00013678	0.37812	0.00016156	427.2663046027323	43.394	0.84662	43.281	42.962	43.809	-0.11253					56	22	3	0	0	0	0.85409	1	3972	3972		54.765	3.4292	1	3014500	+		42821	23576	29590	29641	48174	48174					0.08597812342566158
LLGARDCR	8	Unmodified	_LLGARDCR_					0	0	0			REV__ENSG00000188937|ENST00000378220|NYX	REV__ENSG00000188937|ENST00000378220|NYX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2301330566406	2	452.245086	902.47562	-0.36624	-0.00016563	-0.32527	-0.0001471	-0.69151	-0.00031273	452.24465704315514	26.569	0.46832	26.65	26.331	26.799	0.081293					13	10	2	0	0	0	0.027866	1	1318	1318		26.796	14.589	1	57354	+		42822	28080	29591	29642	48175	48175					0.020480939426761324
LLGARLLL	8	Unmodified	_LLGARLLL_					0	0	0			REV__ENSG00000162998|ENST00000295113|FRZB	REV__ENSG00000162998|ENST00000295113|FRZB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7482604980469	2	434.802563	867.590573	0.10526	4.5765E-05	-0.027386	-1.1907E-05	0.07787	3.3858E-05	434.80241826825954	66.108	0.57423	65.835	65.568	66.142	-0.27282					25	14	3	0	0	0	0.027866	1	7809	7809		14.664	6.4328	1	306480	+		42823	25518	29592	29643	48176	48176					0.15148146416129293
LLGASPSLTL	10	Unmodified	_LLGASPSLTL_					0	0	0			REV__ENSG00000171219|ENST00000342711|CDC42BPG	REV__ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2919616699219	2	486.292225	970.569897	0.86071	0.00041855	-1.6345	-0.00079486	-0.77382	-0.0003763	486.29141327896167	59.829	1.5878	59.829	59.257	60.845	0					113	42	5	0	0	0	0.87795	1	6826	6826		55.504	0	1	28486000	+		42824	26554	29593	29644	48177	48177					0.08343511245811897
LLGCVLTSN	9	Unmodified	_LLGCVLTSN_					0	0	0			REV__ENST00000443503.6_2_3:38023988-38024135:+|nuORF	REV__ENST00000443503.6_2_3:38023988-38024135:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2678527832031	2	460.249503	918.484453	-0.0096762	-4.4535E-06	-0.089855	-4.1356E-05	-0.099531	-4.5809E-05	460.2493386246905	75.21	0.59575	74.965	74.633	75.229	-0.24455					24	14	2	0	0	0	0.024466	1	9175	9175		25.45	13.939	1	236230	+		42825	32580	29594	29645	48178	48178					0.02195022788487222
LLGDEGKPL	9	Unmodified	_LLGDEGKPL_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.26910400390625	2	471.26875	940.522947	0.27441	0.00012932	0.00088899	4.1895E-07	0.2753	0.00012974	471.26860627698454	78.303	1.0331	78.303	77.959	78.993	0					45	24	3	0	0	0	0.33245	1	9696	9696		71.296	5.4925	1	2363600			42826	6749	29595	29646	48179	48179					0.0503065169467618
LLGDEGKPL	9	Unmodified	_LLGDEGKPL_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.26875	940.522947	0.083197	3.9208E-05	-0.1083	-5.104E-05	-0.025107	-1.1832E-05	471.26857398070365	78.534	0.81676	78.279	77.955	78.772	-0.25471	0.021451	2.5871E-05	NaN	71.296	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470610			42827	6749	29595	29646							0.0503065169467618
LLGDEGKPL	9	Unmodified	_LLGDEGKPL_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.26875	940.522947	0.44691	0.00021062	-0.26182	-0.00012339	0.18509	8.7227E-05	471.268480127456	78.48	0.68663	78.249	77.92	78.607	-0.23141	-0.0088869	-0.00011883	NaN	71.296	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429250			42828	6749	29595	29646							0.0503065169467618
LLGDEGKPL	9	Unmodified	_LLGDEGKPL_					0	0	0		UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	UBR1|p.A1412Kfs*31|1|0.11|ENSG00000159459|chr15:42976853-42976854|-/TC|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.26875	940.522947	-0.2134	-0.00010057	0.55035	0.00025936	0.33695	0.00015879	471.2688053839288	78.376	0.64458	78.22	78	78.645	-0.15592	-0.037269	0.00064668	NaN	71.296	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405060			42829	6749	29595	29646							0.0503065169467618
LLGDIRTKKKP	11	Unmodified	_LLGDIRTKKKP_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	634.3746948242188	2	634.906079	1267.79761	-0.98316	-0.00062421	2.9523	0.0018744	1.9692	0.0012502	634.9077529350357	110.7	0.47864	110.58	110.51	110.99	-0.12525					30	17	2	0	0	0	0.024813	1	13593	13593		6.3127	0	1	592090			42830	18447	29596	29647	48180	48180					0.17441889173642267
LLGDQISLL	9	Unmodified	_LLGDQISLL_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000493599.1_1_20:44979343-44980935:-|nuORF;ENST00000480329.5_1_20:44979343-44983832:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2557678222656	2	486.292225	970.569897	-0.90928	-0.00044217	1.9443	0.00094548	1.035	0.00050331	486.29266345988844	53.199	0.39124	53.295	53.127	53.518	0.095669					17	10	2	0	0	0	0.022832	1	5659	5659		82.241	7.1972	1	101710			42831	1682	29597	29648	48181	48181					0.08343511245811897
LLGDTPEQV	9	Unmodified	_LLGDTPEQV_					0	0	0		SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant;SI|p.I1271Nfs*3|1|0.36|ENSG00000090402|chr3:165016028-165016029|-/T|frameshift_variant;SI|p.Y1292Lfs*48|1|0.34|ENSG00000090402|chr3:165015959-165015965|ATAATGT/-|frameshift_variant;ENSG00000090402|ENST00000264382|SI	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	SI|p.E1241Nfs*27|1|0.57|ENSG00000090402|chr3:165017586-165017586|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.25634765625	2	486.25584	970.497126	-0.66244	-0.00032211	0.90163	0.00043842	0.2392	0.00011631	486.25607927494997	53.237	1.548	53.089	52.406	53.954	-0.14724					102	41	5	0	0	0	0.33245	1	5741	5741		71.296	8.3173	1	5141500			42832	1930	29598	29649	48182	48182					0.01069757452387421
LLGEFRCTL	9	Unmodified	_LLGEFRCTL_					0	0	0			REV__nc|ENSG00000113303|Q6UX41-4|BTNL8	REV__nc|ENSG00000113303|Q6UX41-4|BTNL8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.8021850585938	2	526.283877	1050.5532	0.40702	0.00021421	4.0105	0.0021107	4.4176	0.0023249	526.2851848666367	76.696	0.24593	76.71	76.572	76.818	0.013206					9	5	2	0	0	0	0.024294	1	9369	9369		55.504	0	1	134060	+		42833	22057	29599	29650	48183	48183					0.02994687088221326
LLGEFRCTL	9	Unmodified	_LLGEFRCTL_					0	0	0			REV__nc|ENSG00000113303|Q6UX41-4|BTNL8	REV__nc|ENSG00000113303|Q6UX41-4|BTNL8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.283877	1050.5532	-0.22045	-0.00011602	4.5687	0.0024044	4.3483	0.0022884	526.2861560388637	76.8	0.54987	76.631	76.309	76.859	-0.16854	-0.043977	0.00087418	NaN	71.296	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108520	+		42834	22057	29599	29650							0.02994687088221326
LLGEKSITL	9	Unmodified	_LLGEKSITL_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.30084228515625	2	487.30005	972.585547	0.69092	0.00033669	-0.26519	-0.00012923	0.42573	0.00020746	487.29974958494626	58.379	0.85756	58.138	57.918	58.776	-0.24165					42	20	3	0	0	0	0.34489	1	6411	6411		69.628	0.8408	1	1758000	+		42835	26890	29600	29651	48184	48184					0.09815797762848888
LLGELHGTFMV	11	Unmodified	_LLGELHGTFMV_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2195739746094	3	406.218003	1215.63218	-0.83224	-0.00033807	0.83604	0.00033962	0.0038029	1.5448E-06	406.21820590291793	46.245	0.93177	46.043	45.669	46.6	-0.20226					74	25	5	0	0	0	1.0074	1	4444	4444		35.178	0	1	2050000			42836	5550	29601	29652	48185	48185					0.03298914322499513
LLGELPVAGL	10	Unmodified	_LLGELPVAGL_					0	0	0			REV__ENST00000300051.8_2_16:75149460-75150658:-|nuORF	REV__ENST00000300051.8_2_16:75149460-75150658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.3022766113281	2	491.302593	980.590633	0.25062	0.00012313	-0.16595	-8.1533E-05	0.084664	4.1596E-05	491.3023746723937	95.339	0.94035	95.342	95.045	95.985	0.0033798					51	21	3	0	0	0	0.91051	1	12144	12144		53.351	5.6941	1	1315100	+		42837	30041	29602	29653	48186	48186					0.09956101625471092
LLGFFLAKV	9	Unmodified	_LLGFFLAKV_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.24542236328125	2	504.318046	1006.62154	0.073312	3.6973E-05	2.7962	0.0014102	2.8695	0.0014472	504.3194433747614	56.275	0.69139	56.059	55.737	56.429	-0.21607					24	17	2	0	0	0	0.024517	1	6137	6137		26.796	0	1	183260			42838	2354	29603	29654	48187	48187					0.11849299730363327
LLGFLHAEH	9	Unmodified	_LLGFLHAEH_					0	0	0		ENST00000389063.2_1_5:112321606-112321678:+|nuORF	ENST00000389063.2_1_5:112321606-112321678:+|nuORF	ENST00000389063.2_1_5:112321606-112321678:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.780029296875	2	518.782359	1035.55016	-1.3425	-0.00069646	-3.3293	-0.0017272	-4.6718	-0.0024236	518.7805579526613	51.41	1.39	51.497	50.926	52.316	0.087006					86	37	4	0	0	0	0.21579	2	5400	5375;5400		86.935	12.418	1	8677900			42839	13375	29604	29655	48188;48189	48189					0.03381180025712638
LLGFPPQR	8	Unmodified	_LLGFPPQR_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B;PCED1B|p.R300H|1|0.17|ENSG00000179715|chr12:47235962-47235962|G/A|missense_variant	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2972717285156	2	464.27417	926.533787	-0.53941	-0.00025043	-2.6748	-0.0012418	-3.2142	-0.0014923	464.2724924449242	84.595	0.99174	84.522	84.221	85.213	-0.072769					34	23	2	0	0	0	0.027866	1	10620	10620		12.959	0	1	90440			42840	8917	29605	29656	48190	48190					0.06758098859609163
LLGFQLPPL	9	Unmodified	_LLGFQLPPL_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.31854248046875	2	499.307678	996.600803	0.53673	0.00026799	-0.47795	-0.00023864	0.058776	2.9347E-05	499.30727571197434	96.808	1.1068	96.817	96.443	97.55	0.0089111					44	24	2	0	0	0	0.024293	1	12287	12287		62.978	2.0065	1	200620			42841	2827	29606	29657	48191	48191					0.102367093507155
LLGFTPEELH	10	Unmodified	_LLGFTPEELH_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MSMS	OPSCC_40_ClassI_Rep-2	5	578.30615234375	2	578.305864	1154.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.08	1	109.94	109.44	110.44	-0.13983								0	0	0	0.76324	1	13508	13508		23.042	1.0826	1				42842	6606	29607	29658	48192	48192					0.02605994786199517
LLGFVGPGGL	10	Unmodified	_LLGFVGPGGL_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C;DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant;nc|ENSG00000151240|Q9Y2E4-2|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.89312744140625	2	465.276378	928.538203	-0.335	-0.00015587	-0.18194	-8.465E-05	-0.51693	-0.00024052	465.2758355609325	30.127	0.59507	29.883	29.568	30.163	-0.24415					15	13	2	0	0	0	0.03519	1	1925	1925		26.796	0	1	60594			42843	641	29608	29659	48193	48193					0.0710756328254547
LLGGAGAGLLL	11	Unmodified	_LLGGAGAGLLL_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.3292541503906	2	477.80276	953.590967	0.56551	0.0002702	-0.099766	-4.7668E-05	0.46574	0.00022253	477.8024611728371	78.077	0.53035	78.077	77.792	78.323	0					23	12	3	0	0	0	0.02474	1	9684	9684		40.573	10.069	1	235040	+		42844	25557	29609	29660	48194	48194					0.11231521345348483
LLGGAGAGLLL	11	Unmodified	_LLGGAGAGLLL_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	477.80276	953.590967	1.2148	0.00058045	-0.99668	-0.00047622	0.21816	0.00010424	477.80219204322003	78.228	0.45073	78.036	77.806	78.257	-0.1921	-0.037958	-0.00089637	NaN	71.378	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239080	+		42845	25557	29609	29660							0.11231521345348483
LLGGAGAGLLL	11	Unmodified	_LLGGAGAGLLL_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	477.80276	953.590967	-0.27464	-0.00013122	0.81694	0.00039034	0.5423	0.00025911	477.8028863920402	78.093	0.53473	78.109	77.863	78.397	0.015907	0.035223	0.00083674	NaN	71.378	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190540	+		42846	25557	29609	29660							0.11231521345348483
LLGGAPPLL	9	Unmodified	_LLGGAPPLL_					0	0	0			REV__ENST00000311956.8_1_11:46699617-46699725:-|nuORF	REV__ENST00000311956.8_1_11:46699617-46699725:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.77471923828125	2	425.773471	849.53239	0.19274	8.2063E-05	2.6344	0.0011217	2.8272	0.0012037	425.7746312811681	42.075	1.1896	42.101	41.636	42.825	0.026012					124	33	6	0	0	0	0.99355	1	3814	3814		21.702	7.0382	1	66524000	+		42847	30216	29610	29661	48195	48195					0.10160464770854105
LLGGAPPLL	9	Unmodified	_LLGGAPPLL_					0	0	0			REV__ENST00000311956.8_1_11:46699617-46699725:-|nuORF	REV__ENST00000311956.8_1_11:46699617-46699725:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.7752380371094	2	425.773471	849.53239	0.11223	4.7786E-05	2.9026	0.0012358	3.0148	0.0012836	425.7746512667468	42.244	1.0604	42.013	41.688	42.749	-0.2303					107	28	5	0	0	0	0.93795	1	3755	3755		29.842	1.5873	1	35838000	+		42848	30216	29610	29661	48196	48196					0.10160464770854105
LLGGARAPL	9	Unmodified	_LLGGARAPL_					0	0	0		ENST00000530404.5_3_11:843688-847263:+|nuORF	ENST00000530404.5_3_11:843688-847263:+|nuORF	ENST00000530404.5_3_11:843688-847263:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	434.2747802734375	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.469	1	83.3	82.8	83.8	-0.16915								0	0	0	0.63881	1	10081	10081		33.516	3.674	1				42849	16233	29611	29662	48197	48197					0.09518098859598467
LLGGAVPGAR	10	Unmodified	_LLGGAVPGAR_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7532043457031	2	455.777077	909.5396	0.089767	4.0914E-05	0.081688	3.7232E-05	0.17146	7.8146E-05	455.77691537304065	22.267	0.97751	22.267	21.916	22.894	0					43	20	4	0	0	0	0.03519	1	817	817		29.15	13.508	1	304060	+		42850	23819	29612	29663	48198	48198					0.08121197371281141
LLGGAVSVPL	10	Unmodified	_LLGGAVSVPL_					0	0	0			REV__ENSG00000142700|ENST00000404795|DMRTA2	REV__ENSG00000142700|ENST00000404795|DMRTA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7375793457031	2	463.289485	924.564418	0.90231	0.00041803	-0.28874	-0.00013377	0.61358	0.00028426	463.28929350403956	72.712	0.41496	72.721	72.529	72.944	0.0096512					13	9	2	0	0	0	0.03519	1	8808	8808		44.117	11.304	1	148140	+		42851	24179	29613	29664	48199	48199					0.09911832453997249
LLGGGCKMF	9	Carbamidomethyl (C)	_LLGGGC(Carbamidomethyl (C))KMF_	LLGGGC(1)KMF		LLGGGC(68)KMF		0	1	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7962646484375	2	491.746073	981.477594	-0.31864	-0.00015669	-3.8516	-0.001894	-4.1702	-0.0020507	491.74380979735867	47.976	0.33399	47.976	47.875	48.209	0					14	9	2	0	0	0	0.022127	1	4859	4859		68.485	8.1907	1	160620	+		42852	28421	29614	29665	48200	48200	371				-0.013886133637129205
LLGGHFTQV	9	Unmodified	_LLGGHFTQV_					0	0	0			REV__nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	REV__nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2124328613281	2	486.269084	970.523616	-0.097142	-4.7237E-05	1.0673	0.00051901	0.9702	0.00047178	486.26943066267125	55.358	0.81654	55.145	54.788	55.604	-0.21276					35	22	2	0	0	0	0.024386	1	5862	5862		33.516	0	1	415960	+		42853	22978	29615	29666	48201	48201					0.037174911343640815
LLGGHGGASLA	11	Unmodified	_LLGGHGGASLA_					0	0	0			REV__ENSG00000182255|ENST00000328224|KCNA4	REV__ENSG00000182255|ENST00000328224|KCNA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7630310058594	2	476.764166	951.513779	0.21925	0.00010453	-4.2191	-0.0020115	-3.9999	-0.001907	476.76202059485604	66.486	0.97414	66.205	65.387	66.361	-0.28149					37	27	2	0	0	0	0.69247	1	7893	7893		64.207	5.4253	1	1275600	+		42854	27462	29616	29667	48202	48202					0.036083031289990686
LLGGIIAKEV	10	Unmodified	_LLGGIIAKEV_					0	0	0			REV__ENST00000484084.5_1_20:55043753-55045712:+|nuORF	REV__ENST00000484084.5_1_20:55043753-55045712:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8233947753906	2	506.823692	1011.63283	-0.61258	-0.00031047	0.26034	0.00013195	-0.35224	-0.00017852	506.8234952198366	60.499	0.79404	60.285	59.962	60.756	-0.21339					43	20	4	0	0	0	0.45367	1	6932	6932		93.195	5.4412	1	2978900	+		42855	33530	29617	29668	48203	48203					0.1274807703384795
LLGGLCQPLS	10	Carbamidomethyl (C)	_LLGGLC(Carbamidomethyl (C))QPLS_	LLGGLC(1)QPLS		LLGGLC(64)QPLS		0	1	0		ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.288330078125	2	529.289159	1056.56377	-0.7768	-0.00041115	-2.5956	-0.0013738	-3.3724	-0.001785	529.2877348145014	57.447	0.5655	57.447	57.038	57.603	0					24	10	3	0	0	0	0.74632	1	6467	6467		64.207	8.7031	1	3000400			42856	13604	29618	29669	48204	48204	183				0.037746697426428
LLGGPGRRIT	10	Unmodified	_LLGGPGRRIT_					0	0	0		ENST00000350997.11_1_11:61567735-61567927:-|nuORF	ENST00000350997.11_1_11:61567735-61567927:-|nuORF	ENST00000350997.11_1_11:61567735-61567927:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2897338867188	2	520.322183	1038.62981	0.14214	7.3961E-05	-0.76861	-0.00039993	-0.62647	-0.00032597	520.3216919067223	37.108	0.62653	37.045	36.789	37.415	-0.063385					18	16	2	0	0	0	0.03519	1	2986	2986		25.574	12.12	1	70019			42857	12595	29619	29670	48205	48205					0.11204246699708165
LLGGSRLLP	9	Unmodified	_LLGGSRLLP_					0	0	0		ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.29449462890625	2	463.295102	924.575651	-0.95973	-0.00044464	0.34919	0.00016178	-0.61054	-0.00028286	463.29517850450213	48.696	1.5471	48.416	47.962	49.51	-0.27977					102	41	5	0	0	0	0.50848	1	4818	4818		58.782	5.4305	1	9984200			42858	16793	29620	29671	48206	48206					0.11034654548143408
LLGGSVHLTL	10	Unmodified	_LLGGSVHLTL_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-9|NOX4	REV__nc|ENSG00000086991|Q9NPH5-9|NOX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3046875	2	505.305667	1008.59678	0.52634	0.00026596	-0.87061	-0.00043992	-0.34427	-0.00017396	505.3051955886164	69.907	1.1048	69.614	68.933	70.038	-0.29291					79	27	4	0	0	0	0.36026	1	8377	8377		102.77	1.1726	1	6499700	+		42859	20780	29621	29672	48207	48207					0.09282619856992369
LLGGVIMIL	9	Unmodified	_LLGGVIMIL_					0	0	0		nc|ENSG00000117090|Q13291-4|SLAMF1;nc|ENSG00000117090|Q13291-2|SLAMF1;ENSG00000117090|ENST00000302035|SLAMF1	nc|ENSG00000117090|Q13291-4|SLAMF1	nc|ENSG00000117090|Q13291-4|SLAMF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.23028564453125	2	464.798632	927.582711	0.073241	3.4042E-05	4.1061	0.0019085	4.1793	0.0019425	464.80037048302654	37.298	0.51104	37.235	36.941	37.452	-0.063385					21	13	2	0	0	0	0.024289	1	3020	3020		60.404	11.193	1	220990			42860	18197	29622	29673	48208	48208					0.1160225110435249
LLGGVIMIL	9	Unmodified	_LLGGVIMIL_					0	0	0		nc|ENSG00000117090|Q13291-4|SLAMF1;nc|ENSG00000117090|Q13291-2|SLAMF1;ENSG00000117090|ENST00000302035|SLAMF1	nc|ENSG00000117090|Q13291-4|SLAMF1	nc|ENSG00000117090|Q13291-4|SLAMF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2304382324219	2	464.798632	927.582711	0.67607	0.00031423	2.8533	0.0013262	3.5294	0.0016404	464.8000790474955	37.404	0.56573	37.437	37.149	37.715	0.032269					30	14	4	0	0	0	0.024389	1	3001	3001		49.211	22.415	1	214100			42861	18197	29622	29673	48209	48209					0.1160225110435249
LLGHLGMYL	9	Unmodified	_LLGHLGMYL_					0	0	0		CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant;ENSG00000171954|ENST00000269703|CYP4F22	CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant	CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.3263244628906	2	508.783513	1015.55247	0.25872	0.00013163	2.1602	0.001099	2.4189	0.0012307	508.7849205850298	56.796	0.46769	56.571	56.347	56.814	-0.22479					16	11	2	0	0	0	0.024389	1	6142	6142		39.021	20.697	1	521080			42862	616	29623	29674	48210	48210					0.045318924391494875
LLGHWLLTTC	10	Unmodified	_LLGHWLLTTC_					0	0	0		nc|ENSG00000177674|Q6RW13-3|AGTRAP;nc|ENSG00000177674|Q6RW13-5|AGTRAP	nc|ENSG00000177674|Q6RW13-3|AGTRAP	nc|ENSG00000177674|Q6RW13-3|AGTRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.2926025390625	2	578.812802	1155.61105	0.46556	0.00026947	-0.62973	-0.0003645	-0.16417	-9.5025E-05	579.3124731053603	98.896	0.56068	98.771	98.673	99.234	-0.12459					18	14	2	0	0	0	0.03519	1	12304	12304		30.504	0	1	24841			42863	18545	29624	29675	48211	48211					0.03946949013629819
LLGIEIPLP	9	Unmodified	_LLGIEIPLP_					0	0	0		ICAM1|p.T62I|1|0.32|ENSG00000090339|chr19:10274882-10274882|C/T|missense_variant	ICAM1|p.T62I|1|0.32|ENSG00000090339|chr19:10274882-10274882|C/T|missense_variant	ICAM1|p.T62I|1|0.32|ENSG00000090339|chr19:10274882-10274882|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.6461181640625	2	482.807511	963.600469	-0.95092	-0.00045911	-2.0619	-0.00099552	-3.0128	-0.0014546	482.8063290754562	47.303	0.67372	47.363	46.88	47.554	0.059093					28	18	2	0	0	0	0.024466	1	4606	4606		12.207	4.5166	1	275200			42864	17757	29625	29676	48212	48212					0.1172128963086152
LLGIETPL	8	Unmodified	_LLGIETPL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1;ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.26177978515625	2	428.262936	854.51132	0.49679	0.00021276	-3.3115	-0.0014182	-2.8147	-0.0012054	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0572	1	11344	11344		28.254	6.2944	1	86424000			42865	1927	29626	29677	48213	48213					0.0782445467133357
LLGIETPL	8	Unmodified	_LLGIETPL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1;ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.26165771484375	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0572	1	11122	11122		28.254	2.8041	1	68116000			42866	1927	29626	29677	48214	48214					0.0782445467133357
LLGIFFVIP	9	Unmodified	_LLGIFFVIP_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.634521484375	2	509.820421	1017.62629	0.29404	0.00014991	2.3953	0.0012212	2.6893	0.0013711	509.8217185594077	103.29	0.53965	103.16	102.94	103.48	-0.12724					28	12	4	0	0	0	0.024475	1	12820	12820		14.664	5.8418	1	115620	+		42867	21146	29627	29678	48215	48215					0.11818183873128874
LLGIFFVIP	9	Unmodified	_LLGIFFVIP_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.6341857910156	2	509.820421	1017.62629	-0.36611	-0.00018665	3.2498	0.0016568	2.8837	0.0014702	509.8221171743207	103.37	0.33304	103.25	103.05	103.38	-0.12784					12	7	2	0	0	0	0.024475	1	12864	12864		14.664	3.7985	1	78029	+		42868	21146	29627	29678	48216	48216					0.11818183873128874
LLGIGPGKVQ	10	Unmodified	_LLGIGPGKVQ_					0	0	0			REV__ENSG00000177465|ENST00000326303|ACOT4	REV__ENSG00000177465|ENST00000326303|ACOT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2976379394531	2	491.30821	980.601866	-0.65538	-0.00032199	-0.74901	-0.000368	-1.4044	-0.00068999	491.30800603061857	47.438	0.29572	47.341	47.122	47.418	-0.096649					12	7	2	0	0	0	0.03519	1	4651	4651		20.947	8.1352	1	93891	+		42869	27115	29628	29679	48217	48217					0.11078923719617251
LLGILASSSL	10	Unmodified	_LLGILASSSL_					0	0	0			REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF	REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2548522949219	2	487.30005	972.585547	-0.92626	-0.00045137	1.2272	0.00059802	0.30096	0.00014666	487.30056337239955	64.804	0.95636	64.804	64.538	65.494	0					38	26	2	0	0	0	0.03519	1	7622	7622		94.006	35.777	1	811370	+		42870	20731	29629	29680	48218	48218					0.09815797762848888
LLGISLTVLF	10	Unmodified	_LLGISLTVLF_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.326904296875	2	538.341718	1074.66888	-0.3085	-0.00016608	1.0489	0.00056468	0.74042	0.0003986	538.3416609364233	99.549	0.26247	99.544	99.388	99.651	-0.0050888					6	5	2	0	0	0	0.03519	1	12636	12636		38.806	12.113	1	45322			42871	6692	29630	29681	48219	48219					0.13453534210680118
LLGKKSLL	8	Unmodified	_LLGKKSLL_					0	0	0			REV__ENST00000553320.5_2_14:89087611-89093274:-|nuORF	REV__ENST00000553320.5_2_14:89087611-89093274:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.5474853515625	2	436.302396	870.590239	0.2084	9.0928E-05	-0.22097	-9.6409E-05	-0.012563	-5.4812E-06	436.302226109956	29.39	0.28856	29.241	29.129	29.418	-0.14952					9	6	2	0	0	0	0.027866	1	1783	1783		23.042	0	1	55644	+		42872	25898	29631	29682	48220	48220					0.14976726696284004
LLGKKSLL	8	Unmodified	_LLGKKSLL_					0	0	0			REV__ENST00000553320.5_2_14:89087611-89093274:-|nuORF	REV__ENST00000553320.5_2_14:89087611-89093274:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	436.302396	870.590239	-0.51099	-0.00022294	0.85421	0.00037269	0.34322	0.00014975	436.30265443001144	29.319	0.25545	29.146	29.07	29.325	-0.17258	-0.047461	0.00050637	NaN	16.473	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34890	+		42873	25898	29631	29682							0.14976726696284004
LLGKKVVL	8	Unmodified	_LLGKKVVL_					0	0	0		nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9;ENST00000578798.5_1_17:72769807-72771837:-|nuORF;ENST00000582359.5_1_17:72770032-72771837:-|nuORF;ENST00000579837.1_1_17:72771678-72771837:-|nuORF;ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000582118.1_1_17:72769619-72771837:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF	nc|ENSG00000109065|Q9BTE0-2|NAT9	nc|ENSG00000109065|Q9BTE0-2|NAT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77984619140625	2	435.312764	868.610974	0.53842	0.00023438	-0.50347	-0.00021916	0.03495	1.5214E-05	435.31240646907924	47.668	0.43309	47.481	47.279	47.712	-0.18684					16	11	2	0	0	0	0.027866	1	4639	4639		8.2313	4.2461	1	106830			42874	2958	29632	29683	48221	48221					0.17141317075936513
LLGKKVVL	8	Unmodified	_LLGKKVVL_					0	0	0		nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9;ENST00000578798.5_1_17:72769807-72771837:-|nuORF;ENST00000582359.5_1_17:72770032-72771837:-|nuORF;ENST00000579837.1_1_17:72771678-72771837:-|nuORF;ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000582118.1_1_17:72769619-72771837:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF	nc|ENSG00000109065|Q9BTE0-2|NAT9	nc|ENSG00000109065|Q9BTE0-2|NAT9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.312764	868.610974	-0.15891	-6.9177E-05	0.12948	5.6364E-05	-0.029434	-1.2813E-05	435.31268282853966	47.531	0.39185	47.434	47.239	47.631	-0.096649	-0.040815	0.00027815	NaN	8.2313	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109360			42875	2958	29632	29683							0.17141317075936513
LLGKKVVL	8	Unmodified	_LLGKKVVL_					0	0	0		nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9;ENST00000578798.5_1_17:72769807-72771837:-|nuORF;ENST00000582359.5_1_17:72770032-72771837:-|nuORF;ENST00000579837.1_1_17:72771678-72771837:-|nuORF;ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000582118.1_1_17:72769619-72771837:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF	nc|ENSG00000109065|Q9BTE0-2|NAT9	nc|ENSG00000109065|Q9BTE0-2|NAT9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.312764	868.610974	-0.17301	-7.5312E-05	-0.20277	-8.8268E-05	-0.37577	-0.00016358	435.31260705615813	47.786	0.46881	47.51	47.382	47.851	-0.27598	0.034472	-1.111E-05	NaN	8.2313	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172070			42876	2958	29632	29683							0.17141317075936513
LLGKLVNI	8	Unmodified	_LLGKLVNI_					0	0	0		TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.8912658691406	2	435.294571	868.574589	-1.2667	-0.00055137	-0.0050384	-2.1932E-06	-1.2717	-0.00055356	435.2943106186714	65.255	0.44833	65.052	64.859	65.307	-0.20254					17	10	2	0	0	0	0.027866	1	7458	7458		62.978	0	1	262440			42877	38081	29633	29684	48222	48222					0.13504440179247013
LLGKLVNI	8	Unmodified	_LLGKLVNI_					0	0	0		TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	TMCC1|p.I590V|1|0.27|ENSG00000172765|chr3:129651675-129651675|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.8909606933594	2	435.294571	868.574589	-0.085414	-3.718E-05	-1.435	-0.00062465	-1.5204	-0.00066183	435.2936165492728	65.226	0.48837	64.975	64.823	65.312	-0.25112					19	11	2	0	0	0	0.027866	1	7437	7437		42.474	0	1	300470			42878	38081	29633	29684	48223	48223					0.13504440179247013
LLGKRWTV	8	Unmodified	_LLGKRWTV_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7769775390625	2	486.803094	971.591636	-0.39543	-0.0001925	0.68444	0.00033319	0.28901	0.00014069	486.80330643128696	41.792	0.33346	41.66	41.491	41.825	-0.13219					11	8	2	0	0	0	0.027866	1	3770	3770		52.299	8.1824	1	124470	+		42879	36798;24957	29634	29685	48224	48224					0.10470360785041066
LLGKTKIPDL	10	Unmodified	_LLGKTKIPDL_					0	0	0		ENST00000556421.5_1_14:23416818-23417238:-|nuORF	ENST00000556421.5_1_14:23416818-23417238:-|nuORF	ENST00000556421.5_1_14:23416818-23417238:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7671508789062	2	549.350074	1096.6856	-0.58446	-0.00032108	-2.1457	-0.0011788	-2.7302	-0.0014998	549.3486827094223	31.86	0.49646	31.703	31.451	31.948	-0.15772					25	11	3	0	0	0	0.03519	1	2139	2139		19.104	0	1	206470			42880	16709	29635	29686	48225	48225					0.14112035096650288
LLGLALLGI	9	Unmodified	_LLGLALLGI_					0	0	0		ENSG00000178826|ENST00000359333|TMEM139	ENSG00000178826|ENST00000359333|TMEM139	ENSG00000178826|ENST00000359333|TMEM139	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78802490234375	2	441.804771	881.59499	-0.13439	-5.9373E-05	-3.6468	-0.0016112	-3.7812	-0.0016706	441.80308150479766	43.275	0.32589	43.136	42.921	43.247	-0.13929					14	8	2	0	0	0	0.023868	1	4009	4009		39.021	0	1	116490			42881	8839	29636	29687	48226	48226					0.1494561083904955
LLGLALLGI	9	Unmodified	_LLGLALLGI_					0	0	0		ENSG00000178826|ENST00000359333|TMEM139	ENSG00000178826|ENST00000359333|TMEM139	ENSG00000178826|ENST00000359333|TMEM139	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	441.804771	881.59499	-0.31828	-0.00014062	-8.2018	-0.0036236	-8.52	-0.0037642	441.8013560160052	43.115	0.41071	43.002	42.735	43.145	-0.11253	-0.066665	-0.0020019	NaN	39.021	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101010			42882	8839	29636	29687							0.1494561083904955
LLGLAPKLPPD	11	Unmodified	_LLGLAPKLPPD_					0	0	0			REV__ENST00000263033.9_1_X:99957056-99987090:-|nuORF	REV__ENST00000263033.9_1_X:99957056-99987090:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.32958984375	2	567.350074	1132.6856	-0.39697	-0.00022522	-0.86745	-0.00049215	-1.2644	-0.00071737	567.3483087732023	88.843	0.12733	88.859	88.795	88.923	0.015907					4	2	2	0	0	0	0.024749	1	11128	11128		13.454	0	1	44315	+		42883	29676	29637	29688	48227	48227					0.12456035096647611
LLGLCALQI	9	Unmodified	_LLGLCALQI_					0	0	0			REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2878112792969	2	472.285889	942.557224	0.20114	9.4994E-05	3.3876	0.0015999	3.5887	0.0016949	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	0.75282	1	11919	11919		42.474	6.8562	1	52660000	+		42884	22040	29638	29689	48228	48228					0.08364776581913702
LLGLCALQI	9	Unmodified	_LLGLCALQI_					0	0	0			REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2878112792969	2	472.285889	942.557224	-0.12415	-5.8633E-05	3.6131	0.0017064	3.4889	0.0016478	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	0.78069	1	12025	12025		40.573	3.5441	1	53299000	+		42885	22040	29638	29689	48229	48229					0.08364776581913702
LLGLDKFRPPL	11	Unmodified	_LLGLDKFRPPL_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7;WDR7|p.E1158Sfs*3|1|0.35|ENSG00000091157|chr18:56880110-56880116|TGAGGGA/-|frameshift_variant;ENST00000591524.1_1_18:54424563-54448991:+|nuORF	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.89306640625	2	634.889898	1267.76524	0.73688	0.00046784	3.7588	0.0023864	4.4957	0.0028543	634.8922740551877	104.3	1.0119	104.3	103.98	104.99	0.0031357					77	28	5	0	0	0	1.0119	2	13355	13345;13355		34.173	3.6689	1	1973800			42886	1957	29639	29690	48230;48231	48231					0.14207101770671215
LLGLDYYNTIL	11	Unmodified	_LLGLDYYNTIL_					0	0	0		ENST00000460481.1_1_2:172779577-172779664:+|nuORF	ENST00000460481.1_1_2:172779577-172779664:+|nuORF	ENST00000460481.1_1_2:172779577-172779664:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.91278076171875	3	433.239461	1296.69655	-0.75973	-0.00032915	3.6123	0.001565	2.8526	0.0012359	433.24076955398766	21.023	0.2957	21.023	20.9	21.195	0					6	5	2	0	0	0	0.024731	1	605	605		30.569	0	1	5641.1			42887	14658	29640	29691	48232	48232					0.060073926802715505
LLGLHCGR	8	Unmodified	_LLGLHCGR_					0	0	0		ENST00000563741.5_1_16:1828298-1832574:-|nuORF;ENST00000564709.5_1_16:1828298-1831862:-|nuORF;ENST00000565550.1_1_16:1828298-1832508:-|nuORF	ENST00000563741.5_1_16:1828298-1832574:-|nuORF	ENST00000563741.5_1_16:1828298-1832574:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7796630859375	2	434.744722	867.474891	-0.19453	-8.457E-05	0.98113	0.00042654	0.7866	0.00034197	434.7454141823121	37.883	0.28662	37.704	37.557	37.844	-0.17929					13	7	2	0	0	0	0.027866	1	3094	3094		19.36	15.044	1	118210			42888	16875	29641	29692	48233	48233					0.03585299293627031
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3512573242188	2	611.354834	1220.69511	-1.2666	-0.00077434	3.2365	0.0019786	1.9699	0.0012043	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	0.99553	2	11687	11687;11698		37.812	7.4938	1	3820300			42889	6301	29642	29693	48234;48235	48234					0.09359480110538243
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.355712890625	2	611.354834	1220.69511	-0.81332	-0.00049722	2.9276	0.0017898	2.1143	0.0012926	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.0119	1	11950	11950		34.173	9.6534	1	11166000			42890	6301	29642	29693	48236	48236					0.09359480110538243
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.35205078125	2	611.354834	1220.69511	-0.5279	-0.00032273	2.5058	0.0015319	1.9779	0.0012092	611.3562554984684	92.326	2.2035	92.318	91.16	93.364	-0.0082932					149	52	4	0	0	0	0.93615	4	11665	11605;11665;11688;11723		49.442	17.912	1	3964400			42891	6301	29642	29693	48237;48238;48239;48240	48238					0.09359480110538243
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3563232421875	2	611.354834	1220.69511	-0.32068	-0.00019605	2.5162	0.0015383	2.1955	0.0013422	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.018	1	11985	11985		32.812	2.4947	1	11218000			42892	6301	29642	29693	48241	48241					0.09359480110538243
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3533935546875	2	611.354834	1220.69511	-0.79598	-0.00048662	2.8399	0.0017362	2.0439	0.0012496	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.018	2	11634	11634;11656		32.812	2.4947	1	4189200			42893	6301	29642	29693	48242;48243	48242					0.09359480110538243
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3547973632812	2	611.354834	1220.69511	-1.352	-0.00082658	3.5207	0.0021524	2.1687	0.0013258	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	0.99553	1	12040	12040		37.812	8.2608	1	11699000			42894	6301	29642	29693	48244	48244					0.09359480110538243
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.356689453125	2	611.354834	1220.69511	-1.8097	-0.0011063	3.9907	0.0024397	2.181	0.0013334	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	0.98218	2	11671	11671;11707		40.778	12.697	1	13060000			42895	6301	29642	29693	48245;48246	48245					0.09359480110538243
LLGLHPKIEMA	11	Unmodified	_LLGLHPKIEMA_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.356201171875	2	611.354834	1220.69511	0.14542	8.89E-05	2.1046	0.0012867	2.25	0.0013756	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	0.99553	2	11638	11566;11638		37.812	7.4938	1	13233000			42896	6301	29642	29693	48247;48248	48248					0.09359480110538243
LLGLLGPGMS	10	Unmodified	_LLGLLGPGMS_					0	0	0			REV__ENST00000581150.6_1_19:2271460-2271610:+|nuORF	REV__ENST00000581150.6_1_19:2271460-2271610:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.277587890625	2	479.275521	956.536489	-0.16077	-7.7054E-05	3.8323	0.0018367	3.6715	0.0017597	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	0.941	1	9706	9706		51.335	5.3632	1	2028900	+		42897	35526	29643	29694	48249	48249					0.0564818620226788
LLGLLVPVV	9	Unmodified	_LLGLLVPVV_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.8207092285156	2	461.820421	921.62629	1.3703	0.00063285	-1.3411	-0.00061935	0.02923	1.3499E-05	461.81973154993875	97.514	0.66051	97.512	97.234	97.894	-0.0015335					31	14	3	0	0	0	0.65391	1	12372	12372		49.211	10.189	1	249180			42898	18361	29644	29695	48250	48250					0.16234183873132224
LLGLLVPVV	9	Unmodified	_LLGLLVPVV_					0	0	0		nc|ENSG00000146839|Q9Y493-7|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;ENSG00000146839|ENST00000613979|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	nc|ENSG00000146839|Q9Y493-7|ZAN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	461.820421	921.62629	-0.045817	-2.1159E-05	-0.0077031	-3.5575E-06	-0.05352	-2.4717E-05	461.820352128119	97.573	1.001	97.573	97.147	98.148	0	0.04412	0.0006155	NaN	49.211	46	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260530			42899	18361	29644	29695							0.16234183873132224
LLGLPIQP	8	Unmodified	_LLGLPIQP_					0	0	0		nc|ENSG00000142163|Q8WZA6|OR1E3;ENSG00000180016|ENST00000322608|OR1E1;ENSG00000127780|ENST00000248384|OR1E2	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7748107910156	2	425.773471	849.53239	0.13242	5.6379E-05	3.3056	0.0014074	3.438	0.0014638	425.7747769997875	43.162	2.0429	43.05	42.693	44.736	-0.11253					127	54	5	0	0	0	1.0572	1	3928	3928		28.254	6.5519	1	9807800			42900	18343	29645	29696	48251	48251					0.10160464770854105
LLGLPLTGV	9	Unmodified	_LLGLPLTGV_					0	0	0			REV__nc|ENSG00000170615|P58743-5|SLC26A5	REV__nc|ENSG00000170615|P58743-5|SLC26A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.78802490234375	2	441.786579	881.558604	-0.18492	-8.1696E-05	3.2582	0.0014394	3.0733	0.0013577	441.7879440468571	43.189	2.7104	43.049	42.846	45.557	-0.13929					162	77	5	0	0	0	0.78069	2	4009	4009;4033		40.573	6.5047	1	23376000	+		42901	36923	29646	29697	48252;48253	48252					0.11308733942325944
LLGLPLTGV	9	Unmodified	_LLGLPLTGV_					0	0	0			REV__nc|ENSG00000170615|P58743-5|SLC26A5	REV__nc|ENSG00000170615|P58743-5|SLC26A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7882080078125	2	441.786579	881.558604	0.5436	0.00024016	2.4419	0.0010788	2.9855	0.001319	441.7875773536456	43.102	2.1581	43.133	42.939	45.097	0.030827					145	60	5	0	0	0	0.88411	1	3952	3952		33.516	0	1	24747000	+		42902	36923	29646	29697	48254	48254					0.11308733942325944
LLGLPPNGLLL	11	Unmodified	_LLGLPPNGLLL_					0	0	0		nc|ENSG00000173068|Q6ZN30-2|BNC2;ENSG00000173068|ENST00000380672|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3402099609375	2	560.360442	1118.70633	0.39421	0.0002209	1.6654	0.00093325	2.0597	0.0011541	560.3606770697537	101.33	0.36547	101.2	100.9	101.27	-0.13156					11	7	2	0	0	0	0.024783	1	12556	12556		42.396	15.6	1	91913			42903	8337	29647	29698	48255	48255					0.15172625476338908
LLGLPPNGLLL	11	Unmodified	_LLGLPPNGLLL_					0	0	0		nc|ENSG00000173068|Q6ZN30-2|BNC2;ENSG00000173068|ENST00000380672|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.3400268554688	2	560.360442	1118.70633	-0.076072	-4.2628E-05	2.1951	0.0012301	2.1191	0.0011874	560.3617239383095	101.31	0.37073	101.14	100.96	101.33	-0.17178					11	7	2	0	0	0	0.024783	1	12550	12550		51.335	17.163	1	36422			42904	8337	29647	29698	48256	48256					0.15172625476338908
LLGLPTAVV	9	Unmodified	_LLGLPTAVV_					0	0	0		ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.78790283203125	2	441.786579	881.558604	-0.30922	-0.00013661	3.3597	0.0014843	3.0505	0.0013477	441.78798563803605	43.02	2.2928	43.02	42.786	45.079	0					149	64	5	0	0	0	0.88411	1	4027	4027		33.516	1.5607	1	23586000			42905	5206	29648	29699	48257	48257					0.11308733942325944
LLGLRDLN	8	Unmodified	_LLGLRDLN_					0	0	0			REV__ENST00000375023.3_1_6:32188393-32188603:-|nuORF	REV__ENST00000375023.3_1_6:32188393-32188603:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2643737792969	2	457.276909	912.539266	-0.041448	-1.8953E-05	0.81578	0.00037304	0.77433	0.00035408	457.276245107252	81.776	0.2006	81.645	81.543	81.744	-0.13075					6	4	2	0	0	0	0.027866	1	10175	10175		31.955	0	1	41700	+		42906	31315	29649	29700	48258	48258					0.07949777651413115
LLGLRTALV	9	Unmodified	_LLGLRTALV_					0	0	0			REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2673645019531	2	478.318577	954.622602	-0.23322	-0.00011155	0.60102	0.00028748	0.3678	0.00017593	478.3187365590536	69.816	0.36667	69.829	69.585	69.952	0.012421					18	8	3	0	0	0	0.024523	1	8307	8307		37.159	8.0096	1	203870	+		42907	30716	29650	29701	48259	48259					0.14347514099267755
LLGLSHLV	8	Unmodified	_LLGLSHLV_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2459716796875	2	426.271096	850.527639	0.069069	2.9442E-05	0.78467	0.00033448	0.85374	0.00036393	426.2713472931138	86.803	0.33778	86.803	86.561	86.899	0					10	7	2	0	0	0	0.027866	1	10886	10886		21.702	7.0382	1	57417			42908	7493	29651	29702	48260	48260					0.09639580628095246
LLGLSHLV	8	Unmodified	_LLGLSHLV_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	426.271096	850.527639	0.27958	0.00011918	7.6678	0.0032686	7.9474	0.0033878	426.27431450963746	87.029	0.33501	86.842	86.56	86.895	-0.18696	0.019639	0.0029099	NaN	21.702	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39032			42909	7493	29651	29702							0.09639580628095246
LLGLSKKMA	9	Unmodified	_LLGLSKKMA_					0	0	0		ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.8006591796875	2	480.799163	959.583773	0.37808	0.00018178	2.6419	0.0012702	3.02	0.001452	480.80031956512425	94.257	2.0083	94.257	93.77	95.778	0					166	47	6	0	0	0	0.90698	2	11979	11979;11991		31.955	0	1	23477000			42910	15634	29652	29703	48261;48262	48261					0.10236465473246881
LLGLSKKMA	9	Unmodified	_LLGLSKKMA_					0	0	0		ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.8005065917969	2	480.799163	959.583773	-0.09375	-4.5075E-05	3.1194	0.0014998	3.0257	0.0014547	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	0.90698	5	11949	11949;11961;11973;12000;12061		31.955	5.1588	1	24672000			42911	15634	29652	29703	48263;48264;48265;48266;48267	48263					0.10236465473246881
LLGLSKKMA	9	Unmodified	_LLGLSKKMA_					0	0	0		ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.8011779785156	2	480.799163	959.583773	-0.63881	-0.00030714	3.6818	0.0017702	3.043	0.0014631	480.80082202255966	94.22	2.2256	94.226	93.689	95.914	0.0059814					161	52	5	0	0	0	0.78069	5	11876	11876;11884;11896;11920;11932		40.573	13.777	1	22094000			42912	15634	29652	29703	48268;48269;48270;48271;48272	48268					0.10236465473246881
LLGLSKKMA	9	Unmodified	_LLGLSKKMA_					0	0	0		ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.80133056640625	2	480.799163	959.583773	-0.2816	-0.00013539	3.3072	0.0015901	3.0256	0.0014547	480.8006558847944	94.33	2.1067	94.192	93.703	95.809	-0.13779					175	48	6	0	0	0	0.70186	4	11665	11593;11605;11617;11665		45.952	13.777	1	20329000			42913	15634	29652	29703	48273;48274;48275;48276	48276					0.10236465473246881
LLGLSKKMA	9	Unmodified	_LLGLSKKMA_					0	0	0		ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.80059814453125	2	480.799163	959.583773	0.25492	0.00012256	2.9064	0.0013974	3.1613	0.0015199	480.8004656046571	94.354	2.1881	94.232	93.711	95.899	-0.12215					167	50	6	0	0	0	0.78069	5	11619	11597;11607;11619;11655;11668		40.573	8.6178	1	16484000			42914	15634	29652	29703	48277;48278;48279;48280;48281	48279					0.10236465473246881
LLGLSKKMA	9	Unmodified	_LLGLSKKMA_					0	0	0		ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.80059814453125	2	480.799163	959.583773	0.090455	4.3491E-05	3.0156	0.0014499	3.1061	0.0014934	480.8005013291242	94.353	2.0213	94.206	93.738	95.76	-0.14771					162	46	6	0	0	0	0.64155	7	11616	11592;11604;11616;11628;11640;11652;11665		50.025	18.07	1	14863000			42915	15634	29652	29703	48282;48283;48284;48285;48286;48287;48288	48284					0.10236465473246881
LLGLYYFI	8	Unmodified	_LLGLYYFI_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29034423828125	2	501.288954	1000.56336	0.11274	5.6515E-05	2.7978	0.0014025	2.9106	0.001459	501.29026904779676	98.113	1.3182	98.113	97.727	99.045	0					53	30	2	0	0	0	0.9599	1	12545	12545		43.626	6.5976	1	1822700	+		42916	19851	29653	29704	48289	48289					0.06309618085094826
LLGLYYFI	8	Unmodified	_LLGLYYFI_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29010009765625	2	501.288954	1000.56336	-0.4045	-0.00020277	2.871	0.0014392	2.4665	0.0012364	501.2902410582537	98.333	1.0191	98.167	97.834	98.853	-0.1652					56	24	3	0	0	0	0.9599	1	12174	12174		43.626	6.5976	1	1431700	+		42917	19851	29653	29704	48290	48290					0.06309618085094826
LLGMFLKRLS	10	Unmodified	_LLGMFLKRLS_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3430786132812	2	589.359919	1176.70529	-1.3749	-0.0008103	1.6357	0.000964	0.26079	0.0001537	589.3605189340439	93.057	0.38103	93.053	92.819	93.2	-0.0042038					11	8	2	0	0	0	0.03519	1	11769	11769		40.778	7.9657	1	101670			42918	4245	29654	29705	48291	48291					0.12400087835771956
LLGMLLDLGG	10	Unmodified	_LLGMLLDLGG_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2904052734375	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	1.0665	1	10706	10706		37.159	1.5408	1	8460100	+		42919	24038	29655	29706	48292	48292					0.062444553737577735
LLGMLLDLGG	10	Unmodified	_LLGMLLDLGG_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2906188964844	2	501.288628	1000.5627	-0.5165	-0.00025891	3.5401	0.0017746	3.0236	0.0015157	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	1.0004	1	10727	10727		45.952	1.8352	1	8326900	+		42920	24038	29655	29706	48293	48293					0.062444553737577735
LLGMLLDLGG	10	Unmodified	_LLGMLLDLGG_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2925720214844	2	501.288628	1000.5627	0.66236	0.00033203	2.9983	0.001503	3.6606	0.001835	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	1.0541	1	10167	10167		38.806	3.1879	1	3151900	+		42921	24038	29655	29706	48294	48294					0.062444553737577735
LLGMLLDLGG	10	Unmodified	_LLGMLLDLGG_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.28997802734375	2	501.288628	1000.5627	0.0063351	3.1757E-06	3.9276	0.0019688	3.9339	0.001972	501.29041154116453	88.404	1.9279	88.273	87.955	89.883	-0.13135					92	45	3	0	0	0	1.0781	1	10819	10819		35.618	1.4457	1	1364200	+		42922	24038	29655	29706	48295	48295					0.062444553737577735
LLGMLLDLGG	10	Unmodified	_LLGMLLDLGG_					0	0	0			REV__nc|ENSG00000140691|Q96C12-2|ARMC5	REV__nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29034423828125	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0408	1	10537	10537		40.573	3.4135	1	10074000	+		42923	24038	29655	29706	48296	48296					0.062444553737577735
LLGMVPQEA	9	Unmodified	_LLGMVPQEA_					0	0	0		ENST00000528986.1_1_11:121962442-121971135:-|nuORF;ENST00000524376.1_1_11:121962418-121971135:-|nuORF	ENST00000528986.1_1_11:121962442-121971135:-|nuORF	ENST00000528986.1_1_11:121962442-121971135:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7821350097656	2	479.257328	956.500103	-0.010693	-5.1247E-06	-3.4557	-0.0016562	-3.4664	-0.0016613	479.25529373799844	57.935	0.28109	57.757	57.514	57.795	-0.17775					8	6	2	0	0	0	0.024535	1	6318	6318		33.516	13.519	1	338230			42924	16061	29656	29707	48297	48297					0.020113093055442732
LLGMVQPSL	9	Unmodified	_LLGMVQPSL_					0	0	0			REV__nc|ENSG00000135903|P23760|PAX3	REV__nc|ENSG00000135903|P23760|PAX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2777099609375	2	479.275521	956.536489	0.21198	0.0001016	4.1284	0.0019786	4.3404	0.0020802	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.6504	2	10449	10284;10449		49.442	1.5259	1	4888300	+		42925	23591	29657	29708	48298;48299	48299					0.05648186202256511
LLGMVQPSL	9	Unmodified	_LLGMVQPSL_					0	0	0			REV__nc|ENSG00000135903|P23760|PAX3	REV__nc|ENSG00000135903|P23760|PAX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27777099609375	2	479.275521	956.536489	0.51466	0.00024666	3.7322	0.0017887	4.2468	0.0020354	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.4752	2	10281	10281;10537		60.972	4.2509	1	4752300	+		42926	23591	29657	29708	48300;48301	48300					0.05648186202256511
LLGMVQPSL	9	Unmodified	_LLGMVQPSL_					0	0	0			REV__nc|ENSG00000135903|P23760|PAX3	REV__nc|ENSG00000135903|P23760|PAX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2774353027344	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.72875	1	10248	10248		44.117	5.3107	1	7158600	+		42927	23591	29657	29708	48302	48302					0.05648186202256511
LLGMVQPSL	9	Unmodified	_LLGMVQPSL_					0	0	0			REV__nc|ENSG00000135903|P23760|PAX3	REV__nc|ENSG00000135903|P23760|PAX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2776184082031	2	479.275521	956.536489	-0.16077	-7.7054E-05	3.8323	0.0018367	3.6715	0.0017597	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	0.75397	1	9795	9795		42.396	9.5837	1	2028900	+		42928	23591	29657	29708	48303	48303					0.05648186202256511
LLGMVQPSL	9	Unmodified	_LLGMVQPSL_					0	0	0			REV__nc|ENSG00000135903|P23760|PAX3	REV__nc|ENSG00000135903|P23760|PAX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2774658203125	2	479.275521	956.536489	0.2758	0.00013219	3.6384	0.0017438	3.9142	0.001876	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.96906	1	9944	9944		26.693	1.1189	1	7407200	+		42929	23591	29657	29708	48304	48304					0.05648186202256511
LLGNAAIFFV	10	Unmodified	_LLGNAAIFFV_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.3082275390625	2	532.810585	1063.60662	-0.32957	-0.0001756	-1.9681	-0.0010486	-2.2976	-0.0012242	532.809199622919	70.929	1.1836	70.94	70.507	71.691	0.010735					105	29	5	0	0	0	1.0665	1	8478	8478		37.159	2.9866	1	3335500			42930	10425	29658	29709	48305	48305					0.07735807862354704
LLGNEMVK	8	Unmodified	_LLGNEMVK_					0	0	0			REV__ENSG00000152642|ENST00000282541|GPD1L	REV__ENSG00000152642|ENST00000282541|GPD1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.25262451171875	2	452.252046	902.489538	0.41831	0.00018918	0.50853	0.00022998	0.92683	0.00041916	452.25221502306823	104.51	0.80556	104.38	104.14	104.94	-0.12561					41	22	2	0	0	0	0.93437	1	12992	12992		47.657	3.1263	1	733480	+		42931	24856	29659	29710	48306	48306					0.0343932665111879
LLGNIAVLN	9	Unmodified	_LLGNIAVLN_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.78692626953125	2	463.78711	925.559667	0.69134	0.00032063	-0.63638	-0.00029515	0.054954	2.5487E-05	463.7866923026978	70.808	1.1213	70.808	70.483	71.604	0					65	27	4	0	0	0	0.22754	1	8579	8579		85.359	0	1	6074700	+		42932	26216	29660	29711	48307	48307					0.0939094831123839
LLGNLAAADL	10	Unmodified	_LLGNLAAADL_					0	0	0		ENSG00000064547|ENST00000407877|LPAR2;LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7813415527344	2	485.782025	969.549496	0.30251	0.00014695	-1.83	-0.00088899	-1.5275	-0.00074204	485.78103827129513	80.929	1.107	80.723	80.385	81.492	-0.20633					57	26	3	0	0	0	0.59716	1	9723	9723		77.318	2.2743	1	4558200			42933	1275	29661	29712	48308	48308					0.0635034058598194
LLGNRISSI	9	Unmodified	_LLGNRISSI_					0	0	0		ENST00000379374.4_1_X:22196463-22237191:+|nuORF	ENST00000379374.4_1_X:22196463-22237191:+|nuORF	ENST00000379374.4_1_X:22196463-22237191:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2635498046875	2	486.795466	971.57638	-1.0438	-0.00050813	0.49071	0.00023888	-0.55312	-0.00026925	486.79560866437726	30.542	0.75045	30.616	30.337	31.087	0.074314					46	17	4	0	0	0	0.024457	1	1898	1898		29.15	3.6994	1	824100			42934	13261	29662	29713	48309	48309					0.08945449197187827
LLGNWLLIN	9	Unmodified	_LLGNWLLIN_					0	0	0			REV__nc|ENSG00000005436|P16383-2|GCFC2	REV__nc|ENSG00000005436|P16383-2|GCFC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2398681640625	2	528.316035	1054.61752	-0.22051	-0.0001165	3.6798	0.0019441	3.4593	0.0018276	528.3179410615782	63.634	0.80185	63.382	62.893	63.695	-0.25141					22	11	3	0	0	0	0.024294	1	7430	7430		45.952	10.8	1	633880	+		42935	19806	29663	29714	48310	48310					0.09239210236682993
LLGPAGARA	9	Unmodified	_LLGPAGARA_					0	0	0		ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.22735595703125	2	413.250695	824.486836	0.25544	0.00010556	0.70574	0.00029165	0.96118	0.00039721	413.2505179273718	36.938	0.77663	36.745	36.375	37.152	-0.193					52	19	5	0	0	0	0.020485	1	2932	2932		88.643	5.3557	1	876090			42936	7909	29664	29715	48311	48311					0.06757239308467433
LLGPAGARA	9	Unmodified	_LLGPAGARA_					0	0	0		ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	413.250695	824.486836	0.023673	9.7829E-06	0.014632	6.0465E-06	0.038305	1.5829E-05	413.2505918156254	36.906	0.58647	36.944	36.684	37.27	0.038044	0.1295	0.00015761	NaN	88.643	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186600			42937	7909	29664	29715							0.06757239308467433
LLGPALRS	8	Unmodified	_LLGPALRS_					0	0	0		ENSG00000197361|ENST00000638704|FBXL22;nc|ENSG00000197361|Q6P050|FBXL22	ENSG00000197361|ENST00000638704|FBXL22	ENSG00000197361|ENST00000638704|FBXL22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2100830078125	2	413.760895	825.507237	-0.10089	-4.1743E-05	0.90127	0.00037291	0.80039	0.00033117	413.76098444994403	20.579	0.64507	20.356	20.167	20.812	-0.22344					19	12	2	0	0	0	0.027866	1	545	545		19.36	0	1	76416			42938	9987	29665	29716	48312	48312					0.08750409968286021
LLGPAQAR	8	Unmodified	_LLGPAQAR_					0	0	0		ENST00000283131.3_1_4:144434858-144434999:+|nuORF	ENST00000283131.3_1_4:144434858-144434999:+|nuORF	ENST00000283131.3_1_4:144434858-144434999:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2275085449219	2	413.250695	824.486836	-0.55303	-0.00022854	1.2208	0.00050449	0.66775	0.00027595	413.2508214103425	36.984	0.67025	36.764	36.405	37.076	-0.2195					41	16	3	0	0	0	0.027866	1	2944	2944		68.485	2.6815	1	794680			42939	11732	29666	29717	48313	48313					0.06757239308467433
LLGPFAPHTI	10	Unmodified	_LLGPFAPHTI_					0	0	0			REV__ENSG00000177151|ENST00000641268|OR2T35	REV__ENSG00000177151|ENST00000641268|OR2T35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7905883789062	2	533.30821	1064.60187	0.3522	0.00018783	-0.16035	-8.5517E-05	0.19185	0.00010232	533.3088782722525	64.171	0.76855	64.171	63.81	64.578	0					37	20	3	0	0	0	0.03519	1	7586	7586		27.882	2.3082	1	725850	+		42940	27085	29667	29718	48314	48314					0.07214923719629951
LLGPGRGR	8	Unmodified	_LLGPGRGR_					0	0	0			REV__nc|ENSG00000244486|Q96GP6|SCARF2	REV__nc|ENSG00000244486|Q96GP6|SCARF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.20733642578125	2	413.256311	824.49807	-0.5984	-0.00024729	-2.2959	-0.00094878	-2.8943	-0.0011961	413.2553498289898	22.495	0.5548	22.31	21.952	22.507	-0.18539					17	11	2	0	0	0	0.027866	1	787	787		13.775	0	1	120860	+		42941	29000	29668	29719	48315	48315					0.07880061402613592
LLGPLPIRLG	10	Unmodified	_LLGPLPIRLG_					0	0	0			REV__ENST00000395782.5_1_17:17412858-17480243:-|nuORF	REV__ENST00000395782.5_1_17:17412858-17480243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3031616210938	2	524.847502	1047.68045	-0.11646	-6.1125E-05	-0.27461	-0.00014413	-0.39107	-0.00020525	524.8474151406225	64.031	0.36063	63.779	63.59	63.95	-0.25141					20	9	3	0	0	0	0.03519	1	7463	7463		24.203	12.692	1	164890	+		42942	31714	29669	29720	48316	48316					0.158517760246923
LLGPLPPAVD	10	Unmodified	_LLGPLPPAVD_					0	0	0		ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.3104248046875	2	496.294768	990.574983	0.17129	8.501E-05	-0.44806	-0.00022237	-0.27677	-0.00013736	496.2946399213944	74.859	0.88763	74.601	74.327	75.214	-0.25887					41	21	4	0	0	0	0.03519	1	9199	9199		17.365	0	1	217920			42943	10793	29670	29721	48317	48317					0.0793181510841805
LLGPPKYTFAL	11	Unmodified	_LLGPPKYTFAL_					0	0	0			REV__nc|ENSG00000172508|A5YM72|CARNS1	REV__nc|ENSG00000172508|A5YM72|CARNS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.2322998046875	3	407.241025	1218.70125	1.6207	0.00066003	0.28864	0.00011755	1.9094	0.00077758	407.24221637050357	43.509	0.2169	43.54	43.376	43.593	0.030827					8	5	2	0	0	0	0.024774	1	4004	4004		46.457	11.305	1	40350	+		42944	26680	29671	29722	48318	48318					0.10064321613708671
LLGPPLLQ	8	Unmodified	_LLGPPLLQ_					0	0	0			REV__SRD5A3|p.L148Gfs*21|1|0.39|ENSG00000128039|chr4:55364115-55364116|-/TGTGGCTGCACAGCTTACGAAGACTCTTCGAG|frameshift_variant	REV__SRD5A3|p.L148Gfs*21|1|0.39|ENSG00000128039|chr4:55364115-55364116|-/TGTGGCTGCACAGCTTACGAAGACTCTTCGAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.77496337890625	2	425.773471	849.53239	-0.44034	-0.00018748	3.9742	0.0016921	3.5338	0.0015046	425.7750913073762	43.22	2.2821	43.081	42.737	45.019	-0.13929					150	64	5	0	0	0	1.0472	1	4049	4049		29.842	0	1	18199000	+		42945	22963	29672	29723	48319	48319					0.10160464770854105
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.765625	2	424.765646	847.516739	0.28102	0.00011937	0.034925	1.4835E-05	0.31595	0.0001342	424.7655374147557	71.119	1.9671	71.119	70.526	72.493	0					120	49	4	0	0	0	0.0402	5	8585	8585;8596;8607;8619;8631		133.45	73.046	1	6325500			42946	6021	29673	29724	48320;48321;48322;48323;48324	48320					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.7655334472656	2	424.765646	847.516739	0.63174	0.00026834	-0.31681	-0.00013457	0.31493	0.00013377	424.7653849612215	71.419	1.5511	71.13	70.503	72.054	-0.28858					105	39	4	0	0	0	0.0402	5	8608	8597;8608;8618;8631;8643		133.45	73.046	1	6635000			42947	6021	29673	29724	48325;48326;48327;48328;48329	48326					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.7659606933594	2	424.765646	847.516739	0.32949	0.00013996	0.0129	5.4794E-06	0.34239	0.00014544	424.765514734141	71.121	2.068	71.132	70.422	72.49	0.010735					116	52	4	0	0	0	0.0402	5	8513	8513;8525;8537;8548;8561		133.45	73.046	1	5804700			42948	6021	29673	29724	48330;48331;48332;48333;48334	48330					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.76593017578125	2	424.765646	847.516739	0.41045	0.00017435	-0.13213	-5.6125E-05	0.27832	0.00011822	424.7654572339732	71.426	1.0816	71.151	70.788	71.87	-0.2751					73	25	4	0	0	0	0.0402	5	8342	8318;8330;8342;8355;8369		133.45	73.046	1	4150700			42949	6021	29673	29724	48335;48336;48337;48338;48339	48337					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.7656555175781	2	424.765646	847.516739	0.27054	0.00011492	0.095549	4.0586E-05	0.36609	0.0001555	424.76556916416075	71.401	1.9077	71.139	70.69	72.598	-0.26199					101	45	4	0	0	0	0.0402	6	8323	8323;8334;8346;8358;8371;8384		133.45	73.046	1	5456600			42950	6021	29673	29724	48340;48341;48342;48343;48344;48345	48340					0.08688178253805745
LLGPPPVGV	9	Unmodified	_LLGPPPVGV_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.76556396484375	2	424.765646	847.516739	0.97503	0.00041416	-0.67075	-0.00028491	0.30428	0.00012925	424.7652277136582	71.31	1.5368	71.104	70.703	72.24	-0.20613					88	36	4	0	0	0	0.0402	6	8308	8297;8308;8319;8332;8345;8365		133.45	73.046	1	4150800			42951	6021	29673	29724	48346;48347;48348;48349;48350;48351	48347					0.08688178253805745
LLGPPQGGS	9	Unmodified	_LLGPPQGGS_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.22747802734375	2	413.226885	824.439217	1.0144	0.00041917	-0.4077	-0.00016847	0.60669	0.0002507	413.2266359280801	36.951	1.1924	36.742	36.201	37.393	-0.2092					72	29	4	0	0	0	0.35646	1	2905	2905		68.787	5.8084	1	4113200			42952	9758	29674	29725	48352	48352					0.01997540317631774
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.3207092285156	2	476.32112	950.627687	0.99507	0.00047397	-0.43386	-0.00020666	0.56121	0.00026732	476.3207445839341	66.367	1.8417	66.367	66.105	67.947	0					105	50	3	0	0	0	0.22754	6	7888	7879;7888;7894;7902;7911;7921		85.359	26.822	1	6337300			42953	8027	29675	29726	48353;48354;48355;48356;48357;48358	48354					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.3221130371094	2	476.32112	950.627687	0.09588	4.567E-05	0.38908	0.00018533	0.48496	0.000231	476.3211663053395	66.724	1.7744	66.442	66.173	67.947	-0.28148					104	49	3	0	0	0	0.15889	5	7908	7901;7908;7916;7923;7931		97.473	28.988	1	8046500			42954	8027	29675	29726	48359;48360;48361;48362;48363	48360					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.3208312988281	2	476.32112	950.627687	-0.044478	-2.1186E-05	0.69542	0.00033124	0.65094	0.00031006	476.3211944784513	66.414	2.0106	66.444	66.159	68.169	0.030106					100	53	3	0	0	0	0.22754	7	7808	7800;7808;7815;7823;7829;7841;7856		85.359	16.875	1	6536900			42955	8027	29675	29726	48364;48365;48366;48367;48368;48369;48370	48365					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.3216247558594	2	476.32112	950.627687	0.10425	4.9657E-05	0.39673	0.00018897	0.50098	0.00023863	476.3211568686596	66.633	0.58861	66.384	66.061	66.65	-0.2484					42	19	4	0	0	0	0.10076	4	7667	7636;7648;7659;7667		110.34	41.853	1	7679400			42956	8027	29675	29726	48371;48372;48373;48374	48374					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.3221740722656	2	476.32112	950.627687	-0.54617	-0.00026015	0.69041	0.00032886	0.14424	6.8703E-05	476.32132010147	66.598	0.62165	66.375	66.026	66.648	-0.22374					44	18	4	0	0	0	0.22754	4	7638	7638;7650;7663;7675		85.359	16.875	1	5821000			42957	8027	29675	29726	48375;48376;48377;48378	48375					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;TMED10-TTLL5|1|fusion	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.3216247558594	2	476.32112	950.627687	-0.39762	-0.0001894	0.66646	0.00031745	0.26884	0.00012805	476.3213163478973	66.579	0.57334	66.334	65.972	66.545	-0.24517					44	16	4	0	0	0	0.15889	4	7631	7619;7631;7642;7655		97.473	28.988	1	6069400			42958	8027	29675	29726	48379;48380;48381;48382	48380					0.15039817961894641
LLGPVLPAS	9	Unmodified	_LLGPVLPAS_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.7724304199219	2	433.770929	865.527304	0.4682	0.00020309	2.8687	0.0012444	3.3369	0.0014474	433.7719868185217	72.235	2.4257	71.973	70.908	73.334	-0.26199					80	58	2	0	0	0	0.97516	1	8469	8469		25.45	4.9683	1	947330	+		42959	22175	29676	29727	48383	48383					0.08916160908233906
LLGPWLRN	8	Unmodified	_LLGPWLRN_					0	0	0			REV__ENST00000475417.1_1_6:24480140-24495238:-|nuORF	REV__ENST00000475417.1_1_6:24480140-24495238:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.7881164550781	2	484.787444	967.560336	-0.31163	-0.00015107	2.0819	0.0010093	1.7703	0.00085822	484.78810391780854	42.987	0.75516	42.75	42.344	43.099	-0.23737					30	19	2	0	0	0	0.94001	1	3900	3900		46.766	7.7449	1	1140900	+		42960	33293	29677	29728	48384	48384					0.07525787750932977
LLGPWVSP	8	Unmodified	_LLGPWVSP_					0	0	0		ENST00000541788.1_22:38616387-38617064:-|nuORF	ENST00000541788.1_22:38616387-38617064:-|nuORF	ENST00000541788.1_22:38616387-38617064:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7798156738281	2	434.749996	867.485439	-0.42214	-0.00018353	1.1746	0.00051065	0.75245	0.00032713	434.7507041319443	40.012	0.45747	39.899	39.715	40.172	-0.11223					15	11	2	0	0	0	0.027866	1	3455	3455		52.299	24.045	1	103470			42961	16443	29678	29729	48385	48385					0.046396052197110293
LLGQARTH	8	Unmodified	_LLGQARTH_					0	0	0		ENST00000418107.2_1_6:32906702-32908822:-|nuORF	ENST00000418107.2_1_6:32906702-32908822:-|nuORF	ENST00000418107.2_1_6:32906702-32908822:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2584228515625	2	448.259051	894.503549	0.74944	0.00033594	-0.89695	-0.00040207	-0.14751	-6.6124E-05	448.2585106257318	89.09	1.8304	89.069	88.61	90.44	-0.021645					94	43	4	0	0	0	1.043	1	11179	11179		30.504	0	1	7259500			42962	13931	29679	29730	48386	48386					0.05207740194430244
LLGQETRL	8	Unmodified	_LLGQETRL_					0	0	0			REV__nc|ENSG00000001617|Q13275-2|SEMA3F	REV__nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.25689697265625	2	465.274367	928.53418	1.8143	0.00084413	1.7038	0.00079275	3.5181	0.0016369	465.2749075228236	59.248	0.57484	59.061	58.866	59.44	-0.18705					40	15	3	0	0	0	0.027866	1	6737	6737		88.643	9.1918	1	2681900	+		42963	19760	29680	29731	48387	48387					0.06705473788792915
LLGQIPLP	8	Unmodified	_LLGQIPLP_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7752380371094	2	425.773471	849.53239	-0.77888	-0.00033163	4.3224	0.0018404	3.5436	0.0015088	425.7752383126621	43.079	2.1122	43.079	42.75	44.862	0					140	59	5	0	0	0	1.0472	2	4021	4009;4021		29.842	0	1	17325000	+		42964	28396	29681	29732	48388;48389	48389					0.10160464770854105
LLGQIPLP	8	Unmodified	_LLGQIPLP_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.7750549316406	2	425.773471	849.53239	-0.44034	-0.00018748	3.9742	0.0016921	3.5338	0.0015046	425.7750913073762	43.22	2.2821	43.081	42.737	45.019	-0.13929					150	64	5	0	0	0	1.0472	2	4034	4022;4034		29.842	0	1	18199000	+		42965	28396	29681	29732	48390;48391	48391					0.10160464770854105
LLGQIPLP	8	Unmodified	_LLGQIPLP_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.7753601074219	2	425.773471	849.53239	0.67355	0.00028678	2.7876	0.0011869	3.4611	0.0014737	425.7745799755931	43.106	2.4421	43.136	42.759	45.201	0.030823					140	68	5	0	0	0	1.0572	2	3953	3953;3965		28.254	0	1	17718000	+		42966	28396	29681	29732	48392;48393	48392					0.10160464770854105
LLGQIPLP	8	Unmodified	_LLGQIPLP_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7754211425781	2	425.773471	849.53239	0.13242	5.6379E-05	3.3056	0.0014074	3.438	0.0014638	425.7747769997875	43.162	2.0429	43.05	42.693	44.736	-0.11253					127	54	5	0	0	0	1.0472	2	3940	3940;3953		29.842	0	1	9807800	+		42967	28396	29681	29732	48394;48395	48394					0.10160464770854105
LLGQIPLP	8	Unmodified	_LLGQIPLP_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.7749328613281	2	425.773471	849.53239	-0.44573	-0.00018978	3.8346	0.0016327	3.3889	0.0014429	425.77499342824996	43.306	1.947	43.08	42.753	44.7	-0.22597					119	52	5	0	0	0	1.0472	2	3931	3931;3940		29.842	0	1	11576000	+		42968	28396	29681	29732	48396;48397	48396					0.10160464770854105
LLGQKKLN	8	Unmodified	_LLGQKKLN_					0	0	0			REV__ENSG00000100412|ENST00000216254|ACO2	REV__ENSG00000100412|ENST00000216254|ACO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.25872802734375	2	457.295102	912.575651	0.038967	1.782E-05	0.10242	4.6837E-05	0.14139	6.4656E-05	457.29496667570885	60.938	0.74348	60.938	60.473	61.216	0					35	19	3	0	0	0	0.027866	1	7067	7067		54.765	1.4132	1	507650	+		42969	21112	29682	29733	48398	48398					0.11586654548125352
LLGQLLKST	9	Unmodified	_LLGQLLKST_					0	0	0		nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2906799316406	2	486.808042	971.601532	-0.44939	-0.00021877	0.10528	5.1251E-05	-0.34411	-0.00016751	486.80790596659085	27.136	0.56261	27.136	26.908	27.471	0					33	14	3	0	0	0	0.024325	1	1506	1506		40.573	10.069	1	900480			42970	1646	29683	29734	48399	48399					0.11459503999765275
LLGQLLKST	9	Unmodified	_LLGQLLKST_					0	0	0		nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2905578613281	2	486.808042	971.601532	-1.4517	-0.00070668	1.1031	0.000537	-0.34856	-0.00016968	486.8084049633041	26.938	0.47834	27.02	26.841	27.319	0.081291					28	12	3	0	0	0	0.024325	1	1418	1418		40.573	0	1	1016500			42971	1646	29683	29734	48400	48400					0.11459503999765275
LLGQPFVP	8	Unmodified	_LLGQPFVP_					0	0	0			REV__ENST00000493504.1_1_19:59093379-59093973:+|nuORF	REV__ENST00000493504.1_1_19:59093379-59093973:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.24755859375	2	435.757821	869.501089	1.1079	0.00048276	-3.7806	-0.0016474	-2.6728	-0.0011647	435.7558533388672	71.316	0.67358	71.109	70.746	71.42	-0.20613					19	15	2	0	0	0	0.027866	1	8305	8305		54.765	22.81	1	168740	+		42972	33764	29684	29735	48401	48401					0.061118917367593895
LLGQQRLP	8	Unmodified	_LLGQQRLP_					0	0	0		ENST00000348367.8_1_10:113942591-113943479:-|nuORF	ENST00000348367.8_1_10:113942591-113943479:-|nuORF	ENST00000348367.8_1_10:113942591-113943479:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.7843933105469	2	462.784902	923.55525	-0.70821	-0.00032775	0.1496	6.923E-05	-0.55862	-0.00025852	462.7849581866432	43.57	0.99104	43.333	43.061	44.052	-0.23736					75	26	4	0	0	0	0.85409	1	4025	4025		54.765	0	1	10983000			42973	12579	29685	29736	48402	48402					0.09041483888336188
LLGQRAPSP	9	Unmodified	_LLGQRAPSP_					0	0	0		nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1;ENST00000487671.1_1_22:31840579-31845472:-|nuORF	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.77423095703125	2	469.774534	937.534515	-0.68823	-0.00032331	0.083264	3.9115E-05	-0.60497	-0.0002842	469.77444443956506	44.009	0.75821	43.864	43.534	44.292	-0.14471					35	21	2	0	0	0	0.75397	1	4143	4143		42.396	0	1	6198600			42974	9363	29686	29737	48403	48403					0.0632489350865626
LLGRGVAM	8	Unmodified	_LLGRGVAM_					0	0	0		ENST00000337619.9_1_7:100803850-100804129:+|nuORF	ENST00000337619.9_1_7:100803850-100804129:+|nuORF	ENST00000337619.9_1_7:100803850-100804129:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.7322998046875	2	408.741648	815.468743	0.15356	6.2767E-05	0.11958	4.8877E-05	0.27314	0.00011164	408.7415021760509	31.009	0.21226	31.021	30.871	31.084	0.011797					7	4	2	0	0	0	0.027866	1	2012	2012		39.021	0	1	67467			42975	12427	29687	29738	48404	48404					0.053627810621151184
LLGRMLVLD	9	Unmodified	_LLGRMLVLD_					0	0	0		ENSG00000185386|ENST00000330651|MAPK11	ENSG00000185386|ENST00000330651|MAPK11	ENSG00000185386|ENST00000330651|MAPK11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2826538085938	2	515.309895	1028.60524	-1.2976	-0.00066867	-0.96058	-0.00049499	-2.2582	-0.0011637	515.309320792747	65.232	0.79274	64.959	64.369	65.162	-0.27267					48	20	3	0	0	0	0.024541	1	7704	7704		18.324	14.914	1	614970			42976	9434	29688	29739	48405	48405					0.09207850501957182
LLGRMLVLD	9	Unmodified	_LLGRMLVLD_					0	0	0		ENSG00000185386|ENST00000330651|MAPK11	ENSG00000185386|ENST00000330651|MAPK11	ENSG00000185386|ENST00000330651|MAPK11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.309895	1028.60524	-0.56754	-0.00029246	-0.019523	-1.006E-05	-0.58706	-0.00030252	515.3097980307349	64.826	0.55247	64.592	64.256	64.808	-0.2345	-0.27592	0.0005927	NaN	18.324	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254320			42977	9434	29688	29739							0.09207850501957182
LLGRRMGTA	9	Unmodified	_LLGRRMGTA_					0	0	0			REV__ENSG00000178804|ENST00000324382|H1-8	REV__ENSG00000178804|ENST00000324382|H1-8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.8030700683594	2	487.781836	973.549119	0.01594	7.7752E-06	2.8049	0.0013682	2.8208	0.0013759	487.7830837717309	88.943	1.5037	88.958	87.753	89.257	0.015907					55	35	2	0	0	0	0.024436	1	11083	11083		30.504	1.3336	1	649670	+		42978	27208	29689	29740	48406	48406					0.06128642385169769
LLGRTRSP	8	Unmodified	_LLGRTRSP_					0	0	0			REV__ENST00000338074.6_2_20:34761832-34763479:+|nuORF	REV__ENST00000338074.6_2_20:34761832-34763479:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.274169921875	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	0.99042	1	11466	11466		38.806	1.7777	1	55183000	+		42979	30573	29690	29741	48407	48407					0.08152313228515595
LLGRVGTK	8	Unmodified	_LLGRVGTK_					0	0	0			REV__ENST00000589827.5_1_17:75138810-75139725:+|nuORF	REV__ENST00000589827.5_1_17:75138810-75139725:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.5205078125	2	422.27417	842.533787	-0.11164	-4.7143E-05	0.29245	0.00012349	0.18081	7.6351E-05	422.2742716285847	31.818	0.29264	31.661	31.569	31.861	-0.15772					9	6	2	0	0	0	0.027866	1	2125	2125		3.1592	0	1	48597	+		42980	35684	29691	29742	48408	48408					0.106220988596192
LLGSAHEV	8	Unmodified	_LLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2273864746094	2	413.226885	824.439217	1.0144	0.00041917	-0.4077	-0.00016847	0.60669	0.0002507	413.2266359280801	36.951	1.1924	36.742	36.201	37.393	-0.2092					72	29	4	0	0	0	0.46709	2	2914	2914;2926		88.643	17.265	1	4113200			42981	10033	29692	29743	48409;48410	48409					0.019975403176204054
LLGSCIESSSL	11	Unmodified	_LLGSCIESSSL_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.8302612304688	2	554.781364	1107.54818	0.38114	0.00021145	-4.4556	-0.0024719	-4.0744	-0.0022604	554.7794572649346	88.525	0.72675	88.497	88.217	88.944	-0.027657					23	16	2	0	0	0	0.024752	1	11151	11151		25.574	0	1	202290			42982	8409	29693	29744	48411	48411					-0.0012966156507445703
LLGSEIKL	8	Unmodified	_LLGSEIKL_					0	0	0		nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7749938964844	2	436.776211	871.537869	-0.42442	-0.00018538	-2.8951	-0.0012645	-3.3196	-0.0014499	436.77487826052743	90.03	2.3328	90.03	89.44	91.772	0					165	55	5	0	0	0	1.0239	1	11373	11373		33.516	0	1	38190000			42983	4690	29694	29745	48412	48412					0.09696143562666748
LLGSFKCQPN	10	Unmodified	_LLGSFKCQPN_					0	0	0		EVA1C|p.V154G|1|0.29|ENSG00000166979|chr21:32457700-32457700|T/G|missense_variant	EVA1C|p.V154G|1|0.29|ENSG00000166979|chr21:32457700-32457700|T/G|missense_variant	EVA1C|p.V154G|1|0.29|ENSG00000166979|chr21:32457700-32457700|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3320922851562	2	553.786784	1105.55902	0.33454	0.00018527	2.64	0.001462	2.9746	0.0016473	554.2896337197008	95.486	0.60152	95.49	95.183	95.784	0.0041199					16	13	2	0	0	0	0.03519	1	12049	12049		25.574	5.5773	1	69434			42984	17624	29695	29746	48413	48413					0.010457855998993182
LLGSFSRTLI	10	Unmodified	_LLGSFSRTLI_					0	0	0		ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	ENST00000264712.7_1_2:26151240-26151528:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8303833007812	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	0.96965	1	10492	10492		49.442	5.3247	1	1623500			42985	11570	29696	29747	48414	48414					0.10094577919835501
LLGSLVIN	8	Unmodified	_LLGSLVIN_					0	0	0			REV__ENST00000263708.6_1_2:120517455-120517605:+|nuORF	REV__ENST00000263708.6_1_2:120517455-120517605:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.7618103027344	2	414.763104	827.511654	0.29023	0.00012038	-4.0537	-0.0016813	-3.7634	-0.0015609	414.7613841509049	87.889	2.3301	87.752	87.289	89.619	-0.13744					147	55	6	0	0	0	0.96719	1	10675	10675		42.474	0	1	22642000	+		42986	29695	29697	29748	48415	48415					0.09099874391176854
LLGSPGRR	8	Unmodified	_LLGSPGRR_					0	0	0		ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2624816894531	2	428.261594	854.508634	-0.84173	-0.00036048	1.3058	0.00055924	0.46411	0.00019876	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0574	2	11372	11372;11396		26.796	0	1	86056000			42987	6154	29698	29749	48416;48417	48416					0.07556044057048439
LLGSPGRR	8	Unmodified	_LLGSPGRR_					0	0	0		ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2624816894531	2	428.261594	854.508634	0.10911	4.6729E-05	0.34496	0.00014773	0.45407	0.00019446	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0574	1	11343	11343		25.45	0	1	88816000			42988	6154	29698	29749	48418	48418					0.07556044057048439
LLGSPGRR	8	Unmodified	_LLGSPGRR_					0	0	0		ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2622985839844	2	428.261594	854.508634	-0.55429	-0.00023738	0.94817	0.00040607	0.39388	0.00016869	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0574	2	11011	11011;11023		26.796	0	1	83817000			42989	6154	29698	29749	48419;48420	48419					0.07556044057048439
LLGSPGRR	8	Unmodified	_LLGSPGRR_					0	0	0		ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2621154785156	2	428.261594	854.508634	-0.27209	-0.00011653	0.66798	0.00028607	0.39589	0.00016955	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0239	1	11159	11159		33.516	0	1	68116000			42990	6154	29698	29749	48421	48421					0.07556044057048439
LLGSSVVTDET	11	Unmodified	_LLGSSVVTDET_					0	0	0		ENST00000296674.12_1_5:81573566-81574204:-|nuORF	ENST00000296674.12_1_5:81573566-81574204:-|nuORF	ENST00000296674.12_1_5:81573566-81574204:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8135986328125	2	560.790244	1119.56593	0.070603	3.9593E-05	-4.0302	-0.0022601	-3.9595	-0.0022205	561.2894851897396	76.744	0.40604	76.757	76.572	76.978	0.013504					13	9	2	0	0	0	0.024732	1	9363	9363		19.104	0	1	210490			42991	11850	29699	29750	48422	48422					0.01093376961443937
LLGSTLAIMI	10	Unmodified	_LLGSTLAIMI_					0	0	0			REV__RHCE|p.V375M|1|0.13|ENSG00000188672|chr1:25375379-25375379|C/T|missense_variant	REV__RHCE|p.V375M|1|0.13|ENSG00000188672|chr1:25375379-25375379|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.31396484375	2	516.312103	1030.60965	-0.26252	-0.00013554	3.4971	0.0018056	3.2346	0.0016701	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	1.0665	1	12568	12568		37.159	1.5408	1	33267000	+		42992	37440	29700	29751	48423	48423					0.09557314924882121
LLGSTLAIMI	10	Unmodified	_LLGSTLAIMI_					0	0	0			REV__RHCE|p.V375M|1|0.13|ENSG00000188672|chr1:25375379-25375379|C/T|missense_variant	REV__RHCE|p.V375M|1|0.13|ENSG00000188672|chr1:25375379-25375379|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.31396484375	2	516.312103	1030.60965	0.22709	0.00011725	3.0016	0.0015498	3.2287	0.001667	516.313585376337	97.954	2.7122	97.952	97.189	99.901	-0.0020828					210	62	6	0	0	0	1.0665	1	12483	12483		37.159	5.6293	1	31857000	+		42993	37440	29700	29751	48424	48424					0.09557314924882121
LLGSVARKVF	10	Unmodified	_LLGSVARKVF_					0	0	0		ENST00000571722.3_1_17:18966850-18967177:-|nuORF	ENST00000571722.3_1_17:18966850-18967177:-|nuORF	ENST00000571722.3_1_17:18966850-18967177:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3165893554688	2	545.342584	1088.67061	-0.079283	-4.3237E-05	2.6554	0.0014481	2.5761	0.0014049	545.3439031833967	89.059	0.24943	89.038	88.907	89.157	-0.021645					7	5	2	0	0	0	0.03519	1	11217	11217		34.173	9.9698	1	27606			42994	17044	29701	29752	48425	48425					0.12982588019326613
LLGSVAVLCV	10	Unmodified	_LLGSVAVLCV_					0	0	0		nc|ENSG00000204852|Q2MV58-5|TCTN1	nc|ENSG00000204852|Q2MV58-5|TCTN1	nc|ENSG00000204852|Q2MV58-5|TCTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.29345703125	2	487.291171	972.567789	-0.48665	-0.00023714	4.4592	0.0021729	3.9725	0.0019358	487.2932372320569	90.024	1.5907	89.899	89.122	90.712	-0.12512					97	37	4	0	0	0	1.0665	1	11028	11028		37.159	1.5408	1	2379400			42995	18666	29702	29753	48426	48426					0.08040759236359918
LLGSVFQPCT	10	Unmodified	_LLGSVFQPCT_					0	0	0			REV__ENSG00000158473|ENST00000674085|CD1D	REV__ENSG00000158473|ENST00000674085|CD1D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8165893554688	2	532.775885	1063.53722	-0.25971	-0.00013837	-0.31292	-0.00016672	-0.57263	-0.00030508	532.7738836553808	86.775	0.37618	86.73	86.597	86.973	-0.045097					12	8	2	0	0	0	0.03519	1	10864	10864		21.686	0	1	101250	+		42996	25198	29703	29754	48427	48427					0.007989808513002572
LLGSVLPL	8	Unmodified	_LLGSVLPL_					0	0	0			REV__ENST00000412686.5_1_7:99037063-99040649:+|nuORF	REV__ENST00000412686.5_1_7:99037063-99040649:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2490539550781	2	406.268022	810.521491	0.90792	0.00036886	4.0329	0.0016384	4.9408	0.0020073	406.26975125139813	88.023	0.39086	87.891	87.563	87.954	-0.13223					21	9	3	0	0	0	0.027866	1	10695	10695		15.636	0	1	274310	+		42997	32006	29704	29755	48428	48428					0.10865062396578651
LLGSVQALSFV	11	Unmodified	_LLGSVQALSFV_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3294677734375	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0392	1	11283	11283		28.081	2.5074	1	19210000	+		42998	20291	29705	29756	48429	48429					0.08819158199935373
LLGSVQALSFV	11	Unmodified	_LLGSVQALSFV_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3302001953125	2	567.331882	1132.64921	-0.025912	-1.4701E-05	-3.6495	-0.0020705	-3.6754	-0.0020852	567.3297015547128	93.386	0.56843	93.242	92.914	93.483	-0.1441					23	12	2	0	0	0	0.98904	1	11458	11458		39.253	1.4413	1	914870	+		42999	20291	29705	29756	48430	48430					0.08819158199935373
LLGSYTQDN	9	Unmodified	_LLGSYTQDN_					0	0	0		EIF3M|p.E194Q|1|0.27|ENSG00000149100|chr11:32593912-32593912|G/C|missense_variant	EIF3M|p.E194Q|1|0.27|ENSG00000149100|chr11:32593912-32593912|G/C|missense_variant	EIF3M|p.E194Q|1|0.27|ENSG00000149100|chr11:32593912-32593912|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.24542236328125	2	505.743096	1009.47164	0.1484	7.5053E-05	-3.644	-0.0018429	-3.4956	-0.0017679	505.74062005735715	56.684	0.19211	56.481	56.365	56.557	-0.20209					6	4	2	0	0	0	0.024495	1	6137	6137		34.173	3.6689	1	191440			43000	692	29706	29757	48431	48431					-0.032717170700493625
LLGTEKINFV	10	Unmodified	_LLGTEKINFV_					0	0	0			REV__ENSG00000169989|ENST00000304337|TIGD4	REV__ENSG00000169989|ENST00000304337|TIGD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3302001953125	2	567.331882	1132.64921	0.14889	8.447E-05	-3.8286	-0.0021721	-3.6797	-0.0020876	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.0508	1	10994	10994		39.253	8.9351	1	5699400	+		43001	26423	29707	29758	48432	48432					0.08819158199935373
LLGTLISK	8	Unmodified	_LLGTLISK_					0	0	0			REV__ENST00000398080.5_1_X:17767598-17768074:+|nuORF	REV__ENST00000398080.5_1_X:17767598-17768074:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.250244140625	2	422.778754	843.542954	0.39527	0.00016711	0.0018181	7.6867E-07	0.39708	0.00016788	422.77866822474687	53.158	0.41998	53.031	52.833	53.253	-0.12706					18	10	2	0	0	0	0.027866	1	5588	5588		51.335	8.9393	1	167830	+		43002	31794	29708	29759	48433	48433					0.11492447425280261
LLGTLISK	8	Unmodified	_LLGTLISK_					0	0	0			REV__ENST00000398080.5_1_X:17767598-17768074:+|nuORF	REV__ENST00000398080.5_1_X:17767598-17768074:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.778754	843.542954	0.34627	0.00014639	-0.040314	-1.7044E-05	0.30595	0.00012935	422.77862752810427	53.366	0.38007	53.108	52.882	53.262	-0.25838	0.035857	-4.2451E-05	NaN	51.335	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167980	+		43003	31794	29708	29759							0.11492447425280261
LLGTLLPAA	9	Unmodified	_LLGTLLPAA_					0	0	0		ENSG00000166923|ENST00000651154|GREM1;nc|ENSG00000166923|O60565-2|GREM1	ENSG00000166923|ENST00000651154|GREM1	ENSG00000166923|ENST00000651154|GREM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	434.778754	867.542954	-0.30055	-0.00013067	3.4762	0.0015114	3.1757	0.0013807	434.7801213004645	42.409	1.3768	42.177	41.546	42.923	-0.23186					122	36	4	0	0	0	0.80658	1	3828	3828		38.806	8.3025	1	3210900			43004	7629	29709	29760	48434	48434					0.10388447425270897
LLGTLLPAA	9	Unmodified	_LLGTLLPAA_					0	0	0		ENSG00000166923|ENST00000651154|GREM1;nc|ENSG00000166923|O60565-2|GREM1	ENSG00000166923|ENST00000651154|GREM1	ENSG00000166923|ENST00000651154|GREM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7799987792969	2	434.778754	867.542954	-0.5382	-0.000234	3.2413	0.0014092	2.7031	0.0011753	434.7800218543267	44.198	1.8271	43.979	42.88	44.707	-0.21938					157	49	4	0	0	0	0.75282	2	4067	4067;4080		42.474	8.9589	1	4335900			43005	7629	29709	29760	48435;48436	48435					0.10388447425270897
LLGTLLPAA	9	Unmodified	_LLGTLLPAA_					0	0	0		ENSG00000166923|ENST00000651154|GREM1;nc|ENSG00000166923|O60565-2|GREM1	ENSG00000166923|ENST00000651154|GREM1	ENSG00000166923|ENST00000651154|GREM1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	434.778754	867.542954	0.012934	5.6234E-06	3.3564	0.0014593	3.3694	0.0014649	434.7800761644998	42.495	1.8289	42.363	41.753	43.582	-0.13219	0.14843	0.00017773	NaN	38.806	167	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2479100			43006	7629	29709	29760							0.10388447425270897
LLGTSGAIQGP	11	Unmodified	_LLGTSGAIQGP_					0	0	0			REV__ENSG00000102243|ENST00000370634|VGLL1	REV__ENSG00000102243|ENST00000370634|VGLL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3233337402344	2	507.284931	1012.55531	0.010065	5.106E-06	-0.45593	-0.00023129	-0.44587	-0.00022618	507.2848276511625	104.9	0.71355	104.9	104.38	105.09	0					43	22	3	0	0	0	0.024738	1	13436	13436		34.173	1.3601	1	159120	+		43007	21297	29710	29761	48437	48437					0.04953439097664614
LLGTSGAIQGP	11	Unmodified	_LLGTSGAIQGP_					0	0	0			REV__ENSG00000102243|ENST00000370634|VGLL1	REV__ENSG00000102243|ENST00000370634|VGLL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.284931	1012.55531	0.099879	5.0667E-05	-0.48858	-0.00024785	-0.3887	-0.00019718	507.2848259878132	104.97	0.4731	104.97	104.7	105.17	-0.0015945	0.040994	0.00018834	NaN	34.173	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152770	+		43008	21297	29710	29761							0.04953439097664614
LLGTVCMLY	9	Unmodified	_LLGTVCMLY_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7635192871094	2	506.763932	1011.51331	-0.0026277	-1.3316E-06	0.37387	0.00018946	0.37124	0.00018813	506.7639938992478	49.5	0.71252	49.319	49.04	49.752	-0.18071					43	18	3	0	0	0	0.75282	1	4981	4981		42.474	0.078325	1	2254600			43009	6462	29711	29762	48438	48438					0.00801424093276637
LLGVFAVC	8	Unmodified	_LLGVFAVC_					0	0	0		nc|ENSG00000134489|Q9H3N8-2|HRH4;ENSG00000134489|ENST00000256906|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.7555236816406	2	411.233125	820.451696	0.27417	0.00011275	3.154	0.001297	3.4282	0.0014098	411.23505595432005	37.346	0.8894	37.153	36.618	37.508	-0.193					39	22	3	0	0	0	0.027866	1	3036	3036		16.705	0	1	183780			43010	4801	29712	29763	48439	48439					0.034288604563016634
LLGVFAVC	8	Unmodified	_LLGVFAVC_					0	0	0		nc|ENSG00000134489|Q9H3N8-2|HRH4;ENSG00000134489|ENST00000256906|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	411.233125	820.451696	1.8229	0.00074964	5.6087	0.0023065	7.4316	0.0030561	411.23440946713936	37.259	0.94506	37.259	36.578	37.523	0	0.058178	0.00028828	NaN	16.705	34	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117940			43011	4801	29712	29763							0.034288604563016634
LLGVFAVC	8	Unmodified	_LLGVFAVC_					0	0	0		nc|ENSG00000134489|Q9H3N8-2|HRH4;ENSG00000134489|ENST00000256906|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	411.233125	820.451696	0.69759	0.00028687	4.2683	0.0017553	4.9659	0.0020421	411.23481536123177	37.172	0.76003	37.108	36.508	37.268	-0.063385	-0.092201	-0.00081416	NaN	16.705	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121080			43012	4801	29712	29763							0.034288604563016634
LLGVFAVC	8	Unmodified	_LLGVFAVC_					0	0	0		nc|ENSG00000134489|Q9H3N8-2|HRH4;ENSG00000134489|ENST00000256906|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	nc|ENSG00000134489|Q9H3N8-2|HRH4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	411.233125	820.451696	0.61192	0.00025164	4.4377	0.0018249	5.0496	0.0020766	411.23486323045853	37.303	1.1791	37.336	36.643	37.822	0.032269	0.13499	-0.00067485	NaN	16.705	40	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176610			43013	4801	29712	29763							0.034288604563016634
LLGVIVAPS	9	Unmodified	_LLGVIVAPS_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7798156738281	2	434.778754	867.542954	-0.63702	-0.00027696	4.1615	0.0018093	3.5245	0.0015324	434.7804586001769	39.007	1.1435	38.908	38.737	39.88	-0.098755					106	31	4	0	0	0	0.64155	1	3455	3455		50.025	0	1	3134400	+		43014	20936	29713	29764	48440	48440					0.10388447425293634
LLGVIVAPS	9	Unmodified	_LLGVIVAPS_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.78021240234375	2	434.778754	867.542954	-0.80807	-0.00035133	4.0744	0.0017715	3.2664	0.0014202	434.7803826773186	38.404	0.63618	38.224	37.939	38.576	-0.17929					62	17	4	0	0	0	1.0148	1	3193	3193		17.365	0	1	3943600	+		43015	20936	29713	29764	48441	48441					0.10388447425293634
LLGVIVAPS	9	Unmodified	_LLGVIVAPS_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7797546386719	2	434.778754	867.542954	-0.56318	-0.00024486	3.454	0.0015017	2.8908	0.0012569	434.780071839875	48.246	2.2711	48.149	47.557	49.828	-0.097553					144	60	4	0	0	0	0.88411	1	4758	4758		33.516	0	1	2675200	+		43016	20936	29713	29764	48442	48442					0.10388447425293634
LLGVIVAPS	9	Unmodified	_LLGVIVAPS_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7798767089844	2	434.778754	867.542954	-0.30055	-0.00013067	3.4762	0.0015114	3.1757	0.0013807	434.7801213004645	42.409	1.3768	42.177	41.546	42.923	-0.23186					122	36	4	0	0	0	0.90698	1	3841	3841		31.955	2.1133	1	3210900	+		43017	20936	29713	29764	48443	48443					0.10388447425293634
LLGVIVAPS	9	Unmodified	_LLGVIVAPS_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	434.778754	867.542954	-0.72648	-0.00031586	3.6936	0.0016059	2.9671	0.0012901	434.7802124734377	48.558	1.352	48.282	47.775	49.127	-0.27598					129	36	4	0	0	0	0.88411	1	4897	4897		33.516	0	1	3466800	+		43018	20936	29713	29764	48444	48444					0.10388447425293634
LLGVIVAPS	9	Unmodified	_LLGVIVAPS_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	2	434.778754	867.542954	0.1037	4.5087E-05	2.9814	0.0012963	3.0851	0.0013413	434.7799173070872	42.423	1.5544	42.193	41.354	42.908	-0.23029					129	41	4	0	0	0	0.75282	2	3821	3821;3889		42.474	8.9589	1	3875500	+		43019	20936	29713	29764	48445;48446	48445					0.10388447425293634
LLGVIVAPS	9	Unmodified	_LLGVIVAPS_					0	0	0			REV__ENSG00000092621|ENST00000641023|PHGDH	REV__ENSG00000092621|ENST00000641023|PHGDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7790832519531	2	434.778754	867.542954	0.30511	0.00013265	2.618	0.0011382	2.9231	0.0012709	434.7797610540028	48.309	1.399	48.122	47.596	48.995	-0.18684					119	37	4	0	0	0	0.88411	1	4770	4770		33.516	0	1	3718000	+		43020	20936	29713	29764	48447	48447					0.10388447425293634
LLGVLGSLP	9	Unmodified	_LLGVLGSLP_					0	0	0		ENST00000211379.9_1_6:31619532-31620470:-|nuORF;ENST00000375964.10_1_6:31619532-31620470:-|nuORF	ENST00000211379.9_1_6:31619532-31620470:-|nuORF	ENST00000211379.9_1_6:31619532-31620470:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	434.778754	867.542954	0.15534	6.7538E-05	3.0454	0.0013241	3.2007	0.0013916	434.77996518621967	36.241	1.8835	36.025	35.43	37.314	-0.21661					124	49	3	0	0	0	0.78069	1	2837	2837		40.573	0	1	8069600			43021	11141	29714	29765	48448	48448					0.10388447425293634
LLGVPTAPV	9	Unmodified	_LLGVPTAPV_					0	0	0		ENST00000521797.1_1_5:162886593-162886797:-|nuORF	ENST00000521797.1_1_5:162886593-162886797:-|nuORF	ENST00000521797.1_1_5:162886593-162886797:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.7724304199219	2	433.770929	865.527304	0.26144	0.0001134	3.2544	0.0014117	3.5158	0.0015251	433.7721214046263	72.111	2.1183	71.91	70.838	72.956	-0.2012					92	50	3	0	0	0	0.96855	1	8436	8436		26.796	1.3459	1	1110700			43022	16013	29715	29766	48449	48449					0.08916160908222537
LLGVQSCI	8	Unmodified	_LLGVQSCI_					0	0	0			REV__ENST00000492568.1_1_1:230398906-230399248:+|nuORF	REV__ENST00000492568.1_1_1:230398906-230399248:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.23046875	2	416.733489	831.452425	-0.057267	-2.3865E-05	2.2829	0.00095134	2.2256	0.00092748	416.73427852522053	39.876	0.656	39.646	39.352	40.008	-0.23021					25	16	2	0	0	0	0.027866	1	3408	3408		60.294	15.763	1	785710	+		43023	33743	29716	29767	48450	48450					0.0299565510534876
LLGVRAASA	9	Unmodified	_LLGVRAASA_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	429.2632751464844	2	429.263802	856.513051	0.2857	0.00012264	-0.01411	-6.057E-06	0.27159	0.00011658	429.2636841034224	41.653	1.0452	41.525	41.183	42.229	-0.12831					72	27	4	0	0	0	0.053401	4	3679	3679;3689;3701;3714		127.46	22.715	1	5221900			43024	9173	29717	29768	48451;48452;48453;48454	48451					0.07905508479939272
LLGVRAASA	9	Unmodified	_LLGVRAASA_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	429.2637939453125	2	429.263802	856.513051	-0.057871	-2.4842E-05	0.13175	5.6557E-05	0.073883	3.1715E-05	429.26375243265403	41.844	1.6185	41.612	40.803	42.422	-0.23186					83	42	4	0	0	0	0.043667	4	3719	3697;3707;3719;3731		131.03	34.841	1	5488400			43025	9173	29717	29768	48455;48456;48457;48458	48457					0.07905508479939272
LLGVRAASA	9	Unmodified	_LLGVRAASA_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	429.2637634277344	2	429.263802	856.513051	0.24037	0.00010318	-0.17228	-7.3954E-05	0.068085	2.9227E-05	429.26363855498425	41.86	1.2913	41.63	41.003	42.294	-0.23029					82	34	4	0	0	0	0.016758	3	3708	3696;3708;3720		153.04	23.353	1	5983000			43026	9173	29717	29768	48459;48460;48461	48460					0.07905508479939272
LLGWKHNGTV	10	Unmodified	_LLGWKHNGTV_					0	0	0			REV__ENSG00000162426|ENST00000471889|SLC45A1	REV__ENSG00000162426|ENST00000471889|SLC45A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7975463867188	2	562.81419	1123.61383	0.23354	0.00013144	1.3602	0.00076553	1.5937	0.00089697	562.8127083385425	101.85	0.53238	101.72	101.5	102.04	-0.12666					19	13	2	0	0	0	0.03519	1	12654	12654		6.3127	0	1	58664	+		43027	25438	29718	29769	48462	48462					0.056965404627817406
LLGYLPQDL	9	Unmodified	_LLGYLPQDL_					0	0	0		ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1;nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3;ENSG00000132326|ENST00000254657|PER2	ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000049246|P56645|PER3;ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2919921875	2	516.292225	1030.5699	0.099432	5.1336E-05	3.484	0.0017987	3.5834	0.0018501	516.2939651663211	62.797	0.75948	62.852	62.76	63.519	0.054104					36	19	2	0	0	0	0.40179	1	7242	7242		65.803	4.8312	1	3446100			43028	4592;8869;1126	29719	29770	48463	48463					0.05583511245822592
LLHAKPVQV	9	Unmodified	_LLHAKPVQV_					0	0	0			REV__ENST00000272167.9_1_1:226032912-226032984:+|nuORF	REV__ENST00000272167.9_1_1:226032912-226032984:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2537841796875	2	502.816202	1003.61785	-0.83147	-0.00041808	3.4299	0.0017246	2.5984	0.0013065	502.81613238725896	44.628	0.76483	44.628	44.314	45.079	0					57	21	4	0	0	0	0.024487	1	4264	4264		24.203	0	1	461300	+		43029	29808	29720	29771	48464	48464					0.11618629956512905
LLHALRPL	8	Unmodified	_LLHALRPL_					0	0	0			REV__MGAT4C|p.F275L|1|0.11|ENSG00000182050|chr12:85979901-85979901|A/C|missense_variant	REV__MGAT4C|p.F275L|1|0.11|ENSG00000182050|chr12:85979901-85979901|A/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.2447204589844	2	466.805637	931.596721	-0.72559	-0.00033871	1.9721	0.00092059	1.2465	0.00058189	466.806504358531	32.846	0.64511	32.846	32.642	33.287	0					22	16	2	0	0	0	0.027866	1	2336	2336		12.959	0	1	164110	+		43030	36377	29721	29772	48465	48465					0.12818664647636524
LLHAQLSGAD	10	Unmodified	_LLHAQLSGAD_					0	0	0		FCGBP|p.H2171Q|1|0.18|ENSG00000275395|chr19:39892130-39892130|G/T|missense_variant	FCGBP|p.H2171Q|1|0.18|ENSG00000275395|chr19:39892130-39892130|G/T|missense_variant	FCGBP|p.H2171Q|1|0.18|ENSG00000275395|chr19:39892130-39892130|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.288818359375	2	512.774731	1023.53491	-1.0136	-0.00051977	-2.992	-0.0015342	-4.0056	-0.002054	512.7731969939656	83.641	0.73033	83.641	83.223	83.954	0					27	16	2	0	0	0	0.03519	1	10499	10499		32.812	1.2826	1	193390			43031	17647	29722	29773	48466	48466					0.024082684378413433
LLHASHTGQEP	11	Unmodified	_LLHASHTGQEP_					0	0	0		nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;nc|ENSG00000185046|Q7Z6G8-9|ANKS1B;nc|ENSG00000185046|Q7Z6G8-7|ANKS1B	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.2810668945312	2	595.301644	1188.58874	0.15931	9.484E-05	3.1677	0.0018857	3.327	0.0019806	595.3034327238038	59.164	0.51623	58.922	58.661	59.177	-0.24166					28	12	3	0	0	0	0.02475	1	6542	6542		35.152	0	1	414210			43032	18588	29723	29774	48467	48467					0.0019844086957618856
LLHCLTLNQ	9	Unmodified	_LLHCLTLNQ_					0	0	0		ENST00000391975.5_1_2:242168774-242168870:-|nuORF	ENST00000391975.5_1_2:242168774-242168870:-|nuORF	ENST00000391975.5_1_2:242168774-242168870:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.8154907226562	2	527.789327	1053.5641	-1.6632	-0.00087783	1.2302	0.00064931	-0.43297	-0.00022852	527.789867437232	43.941	1.0697	43.941	43.113	44.183	0					58	28	3	0	0	0	0.024183	1	4126	4126		60.294	30.452	1	1689600			43033	13401	29724	29775	48468	48468					0.03946089462465352
LLHDANKSL	9	Unmodified	_LLHDANKSL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.78704833984375	2	505.785099	1009.55564	-0.41906	-0.00021196	0.065808	3.3285E-05	-0.35325	-0.00017867	505.7851199612441	46.881	1.2775	46.728	45.918	47.196	-0.15301					74	34	4	0	0	0	0.20967	1	4657	4657		87.754	1.8925	1	3024600	+		43034	36722	29725	29776	48469	48469					0.05124858817509903
LLHDANKSL	9	Unmodified	_LLHDANKSL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	505.785099	1009.55564	-0.41906	-0.00021196	0.065808	3.3285E-05	-0.35325	-0.00017867	505.7851199612441	46.881	1.2775	46.728	45.918	47.196	-0.15301	0.12115	0.00030674	NaN	87.754	74	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3024600	+		43035	36722	29725	29776							0.05124858817509903
LLHDANKSL	9	Unmodified	_LLHDANKSL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.785099	1009.55564	0.077229	3.9061E-05	-0.77805	-0.00039353	-0.70082	-0.00035447	505.7846151797733	46.515	0.31296	46.418	46.259	46.572	-0.096649	-0.18873	-0.00054688	NaN	87.754	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347040	+		43036	36722	29725	29776							0.05124858817509903
LLHDANKSL	9	Unmodified	_LLHDANKSL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.785099	1009.55564	-0.15037	-7.6055E-05	0.10271	5.195E-05	-0.047659	-2.4105E-05	505.78496351226266	46.804	0.46	46.535	46.304	46.764	-0.26939	-0.071964	0.00034407	NaN	87.754	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391680	+		43037	36722	29725	29776							0.05124858817509903
LLHDANKSL	9	Unmodified	_LLHDANKSL_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.785099	1009.55564	-0.75102	-0.00037985	0.67783	0.00034283	-0.073193	-3.702E-05	505.785118778464	46.625	0.3708	46.432	46.238	46.609	-0.19387	-0.17519	0.00092584	NaN	87.754	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477610	+		43038	36722	29725	29776							0.05124858817509903
LLHENSDLES	10	Unmodified	_LLHENSDLES_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.8034057617188	2	578.777667	1155.54078	0.17792	0.00010297	-0.019411	-1.1234E-05	0.15851	9.174E-05	578.7772369232476	59.157	0.51315	58.916	58.583	59.096	-0.24165					18	12	2	0	0	0	0.03519	1	6512	6512		32.812	0	1	136760	+		43039	37226	29726	29777	48470	48470					-0.03076677841113451
LLHFFLLA	8	Unmodified	_LLHFFLLA_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7956237792969	2	487.297114	972.579674	-0.50885	-0.00024796	0.10323	5.0305E-05	-0.40562	-0.00019766	487.2973069458593	30.819	0.82757	30.641	30.124	30.952	-0.17818					32	19	3	0	0	0	0.027866	1	1997	1997		33.493	6.6969	1	341010			43040	3212	29727	29778	48471	48471					0.09228744041854497
LLHFHMFL	8	Unmodified	_LLHFHMFL_					0	0	0		ENST00000497230.2_1_1:170695565-170695829:+|nuORF	ENST00000497230.2_1_1:170695565-170695829:+|nuORF	ENST00000497230.2_1_1:170695565-170695829:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.60791015625	2	529.286223	1056.55789	-0.38723	-0.00020496	3.115	0.0016487	2.7278	0.0014438	529.2872313089122	72.981	0.38676	72.704	72.539	72.926	-0.2769					12	8	2	0	0	0	0.027866	1	8555	8555		24.504	6.1796	1	72058			43041	15585	29728	29779	48472	48472					0.031876160216143035
LLHFPGGLIL	10	Unmodified	_LLHFPGGLIL_					0	0	0		ENSG00000215029|ENST00000642911|TCP11X2;ENSG00000268235|ENST00000622971|TCP11X1	ENSG00000215029|ENST00000642911|TCP11X2	ENSG00000215029|ENST00000642911|TCP11X2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.3314208984375	2	540.334227	1078.6539	-0.59949	-0.00032393	-3.4429	-0.0018603	-4.0423	-0.0021842	540.3322920966114	67.358	0.8664	67.358	66.926	67.792	0					51	21	3	0	0	0	1.0111	1	8036	8036		44.531	0	1	1763300			43042	10579	29729	29780	48473	48473					0.11772087133385867
LLHGGPQSPL	10	Unmodified	_LLHGGPQSPL_					0	0	0			REV__ENST00000427980.6_1_16:71879975-71883657:+|nuORF	REV__ENST00000427980.6_1_16:71879975-71883657:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.78753662109375	2	509.787641	1017.56073	-1.6617	-0.0008471	1.4314	0.00072972	-0.23025	-0.00011738	509.78813996348833	60.138	0.67382	60.217	59.9	60.573	0.078884					43	17	4	0	0	0	0.60198	1	6814	6814		76.774	2.5191	1	5200200	+		43043	32310	29730	29781	48474	48474					0.05265162680132107
LLHHAIPKN	9	Unmodified	_LLHHAIPKN_					0	0	0			REV__ENSG00000134262|ENST00000369569|AP4B1;REV__ENST00000484201.5_1_1:114440516-114447658:-|nuORF	REV__ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.812744140625	2	521.811451	1041.60835	-0.21676	-0.00011311	2.9847	0.0015574	2.7679	0.0014443	521.8130103174198	42.098	1.6966	42.124	41.821	43.517	0.026016					122	47	3	0	0	0	0.96855	1	3752	3752		26.796	0.10319	1	8235700	+		43044	23432;33533	29731	29782	48475	48475					0.0892086167098114
LLHHALPP	8	Unmodified	_LLHHALPP_					0	0	0		ENSG00000176155|ENST00000694881|CCDC57	ENSG00000176155|ENST00000694881|CCDC57	ENSG00000176155|ENST00000694881|CCDC57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.5614013671875	2	449.268887	896.523222	-1.1113	-0.00049927	0.31722	0.00014252	-0.79408	-0.00035675	449.26924913373006	48.561	0.57414	48.285	48.004	48.578	-0.27598					41	15	4	0	0	0	0.027866	1	4782	4782		24.504	11.545	1	1329300			43045	8616	29732	29783	48476	48476					0.07082116205162947
LLHHASPTQ	9	Unmodified	_LLHHASPTQ_					0	0	0		nc|ENSG00000125485|Q9H8H2|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;ENST00000482620.1_1_9:135536593-135545636:-|nuORF;nc|ENSG00000125485|Q9H8H2-3|DDX31;nc|ENSG00000125485|Q9H8H2-4|DDX31	nc|ENSG00000125485|Q9H8H2|DDX31	nc|ENSG00000125485|Q9H8H2|DDX31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.737548828125	2	502.269616	1002.52468	-0.18733	-9.409E-05	-0.17327	-8.7026E-05	-0.3606	-0.00018112	502.2695515083682	36.396	1.478	36.191	35.819	37.297	-0.20518					102	38	5	0	0	0	0.024323	1	2808	2808		27.882	2.3082	1	3420100			43046	18244	29733	29784	48477	48477					0.023517055032812095
LLHHILEEE	9	Unmodified	_LLHHILEEE_					0	0	0			REV__ENSG00000101544|ENST00000262198|ADNP2	REV__ENSG00000101544|ENST00000262198|ADNP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.821533203125	2	566.803488	1131.59242	-0.46263	-0.00026222	-1.1876	-0.00067316	-1.6503	-0.00093538	566.8022553016061	68.011	0.22847	68.03	67.93	68.158	0.018913					8	5	2	0	0	0	0.024535	1	8059	8059		12.207	0	1	60398	+		43047	21241	29734	29785	48478	48478					0.031891106434159155
LLHIRTTNLLR	11	Unmodified	_LLHIRTTNLLR_					0	0	0			REV__nc|ENSG00000109625|Q66K79-3|CPZ	REV__nc|ENSG00000109625|Q66K79-3|CPZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76123046875	3	450.617377	1348.8303	-0.79336	-0.0003575	-2.5206	-0.0011358	-3.314	-0.0014933	450.6147760312134	38.991	0.28015	38.826	38.727	39.008	-0.16459					9	7	2	0	0	0	0.02484	1	3286	3286		12.433	0	1	166190	+		43048	21803	29735	29786	48479	48479					0.16984096296482676
LLHIYDKVM	9	Unmodified	_LLHIYDKVM_					0	0	0		nc|ENSG00000165816|Q5GFL6-3|VWA2;nc|ENSG00000165816|Q5GFL6-2|VWA2;ENSG00000165816|ENST00000392982|VWA2	nc|ENSG00000165816|Q5GFL6-3|VWA2	nc|ENSG00000165816|Q5GFL6-3|VWA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.3132934570312	2	566.315177	1130.6158	-0.80024	-0.00045319	-2.2122	-0.0012528	-3.0125	-0.001706	566.3138239134385	89.688	1.5448	89.526	89.173	90.718	-0.16261					71	36	2	0	0	0	0.5973	1	10951	10951		52.937	1.744	1	1931800			43049	7472	29736	29787	48480	48480					0.05571833156386674
LLHKDDLPP	9	Unmodified	_LLHKDDLPP_					0	0	0			REV__ANKRD11|p.V361L|1|0.33|ENSG00000167522|chr16:89285461-89285461|C/A|missense_variant	REV__ANKRD11|p.V361L|1|0.33|ENSG00000167522|chr16:89285461-89285461|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3238525390625	2	524.295299	1046.57605	0.03672	1.9252E-05	-0.1733	-9.0862E-05	-0.13658	-7.1609E-05	524.2952183407933	50.057	0.63583	49.777	49.51	50.145	-0.27977					43	16	5	0	0	0	0.024477	1	5092	5092		44.117	28.475	1	702000	+		43050	19137	29737	29788	48481	48481					0.054620294773030764
LLHKKGKNLSK	11	Unmodified	_LLHKKGKNLSK_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000604740.5_1_6:112443215-112450276:-|nuORF	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5623474121094	3	422.60659	1264.79794	1.4055	0.00059396	-3.6714	-0.0015516	-2.2659	-0.0009576	422.6048187159475	17.438	0.24805	17.284	17.209	17.458	-0.15403					7	4	2	0	0	0	0.024779	1	197	197		11.932	0	1	22009			43051	3238	29738	29789	48482	48482					0.17613308893487556
LLHKPRST	8	Unmodified	_LLHKPRST_					0	0	0			REV__ENSG00000100422|ENST00000216264|CERK	REV__ENSG00000100422|ENST00000216264|CERK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.7510986328125	2	476.290351	950.566149	0.21203	0.00010099	-0.0053855	-2.5651E-06	0.20665	9.8424E-05	476.29017460422494	20.302	0.63555	20.079	19.779	20.415	-0.22344					22	12	2	0	0	0	0.027866	1	541	541		31.955	0	1	87142	+		43052	21114	29739	29790	48483	48483					0.08888886262604956
LLHKVAEKV	9	Unmodified	_LLHKVAEKV_					0	0	0			REV__ENSG00000277556|ENST00000374779|OR13C5	REV__ENSG00000277556|ENST00000374779|OR13C5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.2789306640625	2	518.829309	1035.64407	-0.60169	-0.00031217	-0.10817	-5.6124E-05	-0.70986	-0.0003683	518.8291294262599	61.617	0.48643	61.689	61.434	61.92	0.071125					21	12	2	0	0	0	0.02435	1	7089	7089		51.335	14.176	1	415120	+		43053	29198	29740	29791	48484	48484					0.12766899127996112
LLHLENASY	9	Unmodified	_LLHLENASY_					0	0	0		ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2777099609375	2	530.277106	1058.53966	-0.49955	-0.0002649	1.0183	0.00054	0.51878	0.0002751	530.2773461568727	57.936	0.95255	57.759	57.281	58.233	-0.17775					74	23	5	0	0	0	0.32811	1	6330	6330		71.877	5.4482	1	12046000			43054	7845	29741	29792	48485	48485					0.012731525806202626
LLHLGIMIPLM	11	Unmodified	_LLHLGIMIPLM_					0	0	0		ENST00000273398.7_1_3:113503651-113505112:+|nuORF	ENST00000273398.7_1_3:113503651-113505112:+|nuORF	ENST00000273398.7_1_3:113503651-113505112:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.2271728515625	3	417.583629	1249.72906	-0.65618	-0.00027401	4.2146	0.00176	3.5584	0.0014859	417.5853593769479	25.451	0.50072	25.224	24.975	25.476	-0.22683					15	11	2	0	0	0	0.024761	1	1178	1178		15.333	7.9334	1	56129			43055	11668	29742	29793	48486	48486					0.11418185277921111
LLHLGSLSP	9	Unmodified	_LLHLGSLSP_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.76171875	2	468.779285	935.544017	0.27635	0.00012955	-0.27871	-0.00013065	-0.0023625	-1.1075E-06	468.77897239095205	69.183	0.88851	69.198	68.865	69.754	0.015129					45	22	3	0	0	0	0.024466	1	8247	8247		18.324	0	1	555810			43056	6182	29743	29794	48487	48487					0.07366661794185347
LLHLLSRA	8	Unmodified	_LLHLLSRA_					0	0	0			REV__ENSG00000169733|ENST00000310496|RFNG	REV__ENSG00000169733|ENST00000310496|RFNG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.7953796386719	2	461.795269	921.575986	3.1664	0.0014622	-2.9743	-0.0013735	0.19204	8.8682E-05	461.79375537068995	18.429	0.5994	18.186	17.974	18.573	-0.24256					28	11	4	0	0	0	0.845	1	273	273		55.504	0	1	312560	+		43057	26396	29744	29795	48488	48488					0.11206074267988697
LLHLLYLVM	9	Unmodified	_LLHLLYLVM_					0	0	0		ENST00000490508.5_1_2:85582731-85618082:+|nuORF;ENST00000410106.5_1_2:85598540-85618082:+|nuORF;nc|ENSG00000115459|Q96FG2-2|ELMOD3;ENSG00000115459|ENST00000409013|ELMOD3;nc|ENSG00000115459|Q96FG2-6|ELMOD3	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2824096679688	2	557.838288	1113.66202	-0.58994	-0.00032909	-3.3596	-0.0018741	-3.9496	-0.0022032	557.8362071262499	58.524	0.39922	58.336	58.101	58.5	-0.18705					24	10	3	0	0	0	0.024389	1	6581	6581		29.842	0	1	611910			43058	15433	29745	29796	48489	48489					0.10973898058477971
LLHLLYLVM	9	Unmodified	_LLHLLYLVM_					0	0	0		ENST00000490508.5_1_2:85582731-85618082:+|nuORF;ENST00000410106.5_1_2:85598540-85618082:+|nuORF;nc|ENSG00000115459|Q96FG2-2|ELMOD3;ENSG00000115459|ENST00000409013|ELMOD3;nc|ENSG00000115459|Q96FG2-6|ELMOD3	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.2825317382812	2	557.838288	1113.66202	0.036677	2.046E-05	-3.7072	-0.002068	-3.6705	-0.0020476	557.8360691744855	58.136	0.46815	58.227	57.979	58.448	0.091217					30	12	3	0	0	0	0.024475	1	6454	6454		29.842	0	1	655280			43059	15433	29745	29796	48490	48490					0.10973898058477971
LLHLSLFF	8	Unmodified	_LLHLSLFF_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.80572509765625	2	495.294571	988.574589	-0.34869	-0.00017271	1.6285	0.00080658	1.2798	0.00063388	495.29557096390374	39.93	0.53889	39.7	39.391	39.93	-0.23021					18	13	2	0	0	0	0.027866	1	3367	3367		8.2313	0	1	151420			43060	16292	29746	29797	48491	48491					0.07984440179222929
LLHNNRKLL	9	Unmodified	_LLHNNRKLL_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant;ITPR3|p.D722Efs*12|1|0.07|ENSG00000096433|chr6:33669133-33669133|C/-|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.8511962890625	2	560.851107	1119.68766	0.19003	0.00010658	1.191	0.00066799	1.381	0.00077456	560.8514298856466	103.54	0.45993	103.41	103.19	103.65	-0.12724					18	10	2	0	0	0	0.92825	1	12875	12875		30.504	7.4612	1	161080			43061	6165;2051;3956	29747	29798	48492	48492					0.13260508625126022
LLHNNRKLL	9	Unmodified	_LLHNNRKLL_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant;ITPR3|p.D722Efs*12|1|0.07|ENSG00000096433|chr6:33669133-33669133|C/-|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	560.851107	1119.68766	-0.27163	-0.00015234	1.6645	0.00093354	1.3929	0.0007812	560.8514344937288	103.56	0.40503	103.43	103.25	103.66	-0.12783	0.01268	0.00033894	NaN	30.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94720			43062	6165;2051;3956	29747	29798							0.13260508625126022
LLHPAAPS	8	Unmodified	_LLHPAAPS_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5927429199219	2	403.231971	804.449388	-0.30989	-0.00012496	2.1633	0.00087232	1.8534	0.00074736	403.2326894198113	38.287	0.63618	38.107	37.939	38.576	-0.17929					25	17	2	0	0	0	0.027866	1	3132	3132		28.254	8.8943	1	90464	+		43063	25522	29748	29799	48493	48493					0.03934148042844754
LLHPAAPS	8	Unmodified	_LLHPAAPS_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	403.231971	804.449388	0.1887	7.609E-05	0.79156	0.00031918	0.98026	0.00039527	403.23223640408736	38.487	0.37304	38.265	38.085	38.458	-0.22149	0.05062	-0.000547	NaN	28.254	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87896	+		43064	25522	29748	29799							0.03934148042844754
LLHPALVS	8	Unmodified	_LLHPALVS_					0	0	0		ENST00000345136.7_2_8:144989462-144989657:-|nuORF	ENST00000345136.7_2_8:144989462-144989657:-|nuORF	ENST00000345136.7_2_8:144989462-144989657:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.862060546875	2	425.263271	848.511988	-0.18694	-7.9499E-05	0.2422	0.000103	0.055264	2.3502E-05	425.263265776838	30.003	0.42287	29.759	29.525	29.948	-0.24415					16	9	2	0	0	0	0.027866	1	1890	1890		23.037	4.7123	1	150760			43065	12562	29749	29800	48494	48494					0.08167294111035517
LLHPEEKKL	9	Unmodified	_LLHPEEKKL_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.829833984375	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.83071	1	11157	11157		37.159	4.3467	1	4896800	+		43066	23077	29750	29801	48495	48495					0.10094577919812764
LLHPEEKKL	9	Unmodified	_LLHPEEKKL_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.80658	1	10747	10747		38.806	6.8513	1	1748900	+		43067	23077	29750	29801	48496	48496					0.10094577919812764
LLHPEEKKL	9	Unmodified	_LLHPEEKKL_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8296508789062	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	0.6504	1	11128	11128		49.442	7.0454	1	5986700	+		43068	23077	29750	29801	48497	48497					0.10094577919812764
LLHPEEKKL	9	Unmodified	_LLHPEEKKL_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8309936523438	2	553.832049	1105.64954	0.041819	2.3161E-05	-3.8244	-0.0021181	-3.7826	-0.0020949	553.8296782014007	101.58	0.90076	101.41	101.15	102.05	-0.17178					49	20	4	0	0	0	0.96322	1	12619	12619		27.882	1.1893	1	519240	+		43069	23077	29750	29801	48498	48498					0.10094577919812764
LLHPQVLED	9	Unmodified	_LLHPQVLED_					0	0	0		ENST00000496089.6_1_19:40739781-40742062:-|nuORF	ENST00000496089.6_1_19:40739781-40742062:-|nuORF	ENST00000496089.6_1_19:40739781-40742062:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7981567382812	2	532.292756	1062.57096	-0.46099	-0.00024538	2.289	0.0012184	1.828	0.00097302	532.7959604055143	101.92	0.67728	101.93	101.65	102.33	0.0073471					28	15	2	0	0	0	0.024354	1	12993	12993		57.811	3.0889	1	73754			43070	15558	29751	29802	48499	48499					0.04217725614716983
LLHRHRRRLRR	11	Unmodified	_LLHRHRRRLRR_					0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.80126953125	3	523.669692	1567.98725	-0.13718	-7.1837E-05	-2.7577	-0.0014441	-2.8948	-0.0015159	524.0016355070558	19.565	0.22959	19.565	19.414	19.644	0					6	4	2	0	0	0	0.024898	1	425	425		3.2113	0	1	12563			43071	3058	29752	29803	48500	48500					0.2259723875004056
LLHRKTPL	8	Unmodified	_LLHRKTPL_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.3133544921875	2	489.316369	976.618185	-0.85842	-0.00042004	-4.2175	-0.0020637	-5.0759	-0.0024837	489.3142004915776	94.225	0.85927	94.231	93.89	94.75	0.0059891					57	20	4	0	0	0	1.0572	1	11917	11917		28.254	0	1	1745200	+		43072	26186	29753	29804	48501	48501					0.12894049676367558
LLHRLTLG	8	Unmodified	_LLHRLTLG_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.79541015625	2	461.795269	921.575986	0.85056	0.00039278	-0.72389	-0.00033429	0.12667	5.8494E-05	461.79480167740695	18.378	0.59193	18.222	18.002	18.594	-0.15637					23	11	3	0	0	0	0.44658	1	294	294		90.777	0	1	327950			43073	9764	29754	29805	48502	48502					0.11206074267988697
LLHRPVHW	8	Unmodified	_LLHRPVHW_					0	0	0		ENST00000359741.9_3_8:22267528-22267600:+|nuORF	ENST00000359741.9_3_8:22267528-22267600:+|nuORF	ENST00000359741.9_3_8:22267528-22267600:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7793579101562	2	529.306336	1056.59812	-0.43343	-0.00022942	-2.4712	-0.001308	-2.9047	-0.0015375	529.806480829425	63.74	0.14488	63.548	63.456	63.601	-0.19243					5	3	2	0	0	0	0.027866	1	7228	7228		21.702	0	1	121880			43074	12747	29755	29806	48503	48503					0.07208298736418328
LLHRQRDL	8	Unmodified	_LLHRQRDL_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7830810546875	2	525.811982	1049.60941	0.47781	0.00025124	-2.1588	-0.0011351	-1.681	-0.0008839	525.811319234681	49.806	0.14721	49.625	49.57	49.717	-0.18071					5	3	2	0	0	0	0.027866	1	5013	5013		31.955	0	1	58729			43075	7493	29756	29807	48504	48504					0.08659076039884894
LLHSAPAPPL	10	Unmodified	_LLHSAPAPPL_					0	0	0			REV__ENST00000233121.6_1_2:27249316-27249727:+|nuORF	REV__ENST00000233121.6_1_2:27249316-27249727:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2681884765625	2	508.300384	1014.58622	-0.11297	-5.7421E-05	1.0028	0.0005097	0.88978	0.00045228	508.3003175294734	61.804	0.79012	61.591	61.416	62.206	-0.21375					54	19	4	0	0	0	0.03519	1	6998	6998		31.955	13.63	1	1153600	+		43076	29416	29757	29808	48505	48505					0.07950637202554844
LLHSDGIE	8	Unmodified	_LLHSDGIE_					0	0	0			REV__nc|ENSG00000186510|P51800-3|CLCNKA	REV__nc|ENSG00000186510|P51800-3|CLCNKA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.2310485839844	2	442.229625	882.444697	0.091805	4.0599E-05	4.293	0.0018985	4.3848	0.0019391	442.2314296782027	47.099	1.679	46.905	46.577	48.256	-0.19387					108	45	4	0	0	0	0.88442	1	4560	4560		52.299	7.7681	1	11135000	+		43077	27864	29758	29809	48506	48506					-0.0012278089056962926
LLHSHDTET	9	Unmodified	_LLHSHDTET_					0	0	0		ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2867431640625	2	526.753995	1051.49344	-0.42024	-0.00022136	-3.3633	-0.0017716	-3.7835	-0.001993	526.7522698825901	61.089	1.435	61.16	60.195	61.63	0.071129					69	37	2	0	0	0	0.024354	1	6869	6869		38.806	0	1	196840			43078	5199	29759	29810	48507	48507					-0.030249123214844076
LLHSLKEII	9	Unmodified	_LLHSLKEII_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.300048828125	2	533.336967	1064.65938	-0.43274	-0.0002308	-0.28341	-0.00015115	-0.71615	-0.00038195	533.3368216204893	61.329	0.21367	61.102	61.011	61.225	-0.22663					8	5	2	0	0	0	0.024511	1	7049	7049		40.778	18.818	1	86578			43079	3121	29760	29811	48508	48508					0.12963765925201187
LLHTLIIKV	9	Unmodified	_LLHTLIIKV_					0	0	0			REV__ENSG00000174225|ENST00000450049|ARL13A	REV__ENSG00000174225|ENST00000450049|ARL13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3153686523438	2	525.357702	1048.70085	-0.048987	-2.5736E-05	-0.5484	-0.00028811	-0.59739	-0.00031384	525.8566669604157	73.599	0.24259	73.409	73.276	73.519	-0.19026					6	5	2	0	0	0	0.024541	1	8655	8655		19.36	11.67	1	45549	+		43080	26842	29761	29812	48509	48509					0.17844946684522256
LLHTLLRG	8	Unmodified	_LLHTLLRG_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.7950744628906	2	461.795269	921.575986	0.13833	6.388E-05	0.0027701	1.2792E-06	0.1411	6.516E-05	461.7951259660024	18.441	0.59439	18.237	18.014	18.609	-0.20371					23	11	3	0	0	0	0.81662	1	293	293		57.811	0	1	330800			43081	7968	29762	29813	48510	48510					0.11206074268000066
LLHTLMVLQLT	11	Unmodified	_LLHTLMVLQLT_					0	0	0		ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.9258728027344	3	427.92482	1280.75263	-0.25745	-0.00011017	2.3402	0.0010014	2.0828	0.00089126	427.92576293040884	101.37	0.91425	101.37	100.95	101.86	0					65	20	5	0	0	0	1.0483	1	12982	12982		17.167	3.9303	1	648060			43082	8093	29763	29814	48511	48511					0.12348322316120175
LLHTLMVLQLT	11	Unmodified	_LLHTLMVLQLT_					0	0	0		ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.384033203125	2	641.383591	1280.75263	-0.27889	-0.00017887	2.0579	0.0013199	1.779	0.001141	641.384701093394	101.52	0.72579	101.35	101.05	101.78	-0.17178					47	15	4	0	0	0	1.0292	1	12592	12592		30.318	4.2543	1	985230			43083	8093	29763	29814	48512	48512					0.12348322316120175
LLHTLMVLQLT	11	Unmodified	_LLHTLMVLQLT_					0	0	0		ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	427.92482	1280.75263	-0.12631	-5.4053E-05	2.1617	0.00092503	2.0354	0.00087098	427.92569915479913	101.3	0.64894	101.31	101.05	101.69	0.0090332	-0.037363	0.0005658	NaN	17.167	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665290			43084	8093	29763	29814							0.12348322316120175
LLHTLMVLQLT	11	Unmodified	_LLHTLMVLQLT_					0	0	0		ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	427.92482	1280.75263	0.5111	0.00021871	1.3939	0.00059648	1.905	0.00081519	427.9254339023776	101.5	0.81295	101.33	101.01	101.82	-0.17178	-0.015697	-0.00041985	NaN	17.167	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430360			43085	8093	29763	29814							0.12348322316120175
LLHTPDLE	8	Unmodified	_LLHTPDLE_					0	0	0		ENST00000597934.1_1_19:7754081-7762121:-|nuORF	ENST00000597934.1_1_19:7754081-7762121:-|nuORF	ENST00000597934.1_1_19:7754081-7762121:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.7643127441406	2	469.2531	936.491647	0.37557	0.00017624	0.26609	0.00012486	0.64166	0.0003011	469.25292707060083	71.796	0.72269	71.534	71.282	72.004	-0.262					32	17	3	0	0	0	0.027866	1	8463	8463		31.955	17.291	1	310310			43086	17459	29764	29815	48513	48513					0.020860786605680914
LLHTVHVLS	9	Unmodified	_LLHTVHVLS_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8043518066406	2	509.805834	1017.59712	0.26088	0.000133	-4.4458	-0.0022665	-4.185	-0.0021335	509.8034341260335	98.051	1.1848	98.061	97.728	98.913	0.010231					53	27	3	0	0	0	0.98128	1	12475	12475		24.203	2.5004	1	929870			43087	1089	29765	29816	48514	48514					0.08902039576844345
LLHVKDLEF	9	Unmodified	_LLHVKDLEF_					0	0	0		nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.3160400390625	2	557.318774	1112.623	0.12303	6.8568E-05	-0.73224	-0.00040809	-0.60921	-0.00033953	557.318306226657	69.604	0.84265	69.604	69.238	70.081	0					72	21	5	0	0	0	0.20967	2	8369	8369;8430		87.754	7.0884	1	9046200			43088	8795	29766	29817	48515;48516	48515					0.07118889028470221
LLHVKDLEF	9	Unmodified	_LLHVKDLEF_					0	0	0		nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3175659179688	2	557.318774	1112.623	-0.13902	-7.7481E-05	-1.9446	-0.0010837	-2.0836	-0.0011612	557.3174457265237	69.763	0.97316	69.775	69.131	70.104	0.012421					87	24	5	0	0	0	0.11092	1	8312	8312		108.09	31.241	1	9234900			43089	8795	29766	29817	48517	48517					0.07118889028470221
LLHVKDLEFLL	11	Unmodified	_LLHVKDLEFLL_					0	0	0		nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.2740478515625	3	447.270984	1338.79112	0.2875	0.00012859	4.1482	0.0018554	4.4357	0.0019839	447.27275580646767	106.14	0.71733	106.14	105.89	106.6	-0.0013123					70	22	4	0	0	0	1.0684	1	13602	13602		20.03	2.1973	1	1980000			43090	8795	29767	29818	48518	48518					0.13527951222295087
LLHVKDLEFLL	11	Unmodified	_LLHVKDLEFLL_					0	0	0		nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42;nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.2736511230469	3	447.270984	1338.79112	0.61872	0.00027674	3.7444	0.0016747	4.3631	0.0019515	447.2725425691253	106.39	0.89557	106.23	105.77	106.67	-0.16132					103	41	5	0	0	0	1.0465	1	13227	13227		26.063	5.7484	1	1499900			43091	8795	29767	29818	48519	48519					0.13527951222295087
LLHVLSSKV	9	Unmodified	_LLHVLSSKV_					0	0	0			REV__ENST00000450743.5_1_7:43988307-43990240:+|nuORF	REV__ENST00000450743.5_1_7:43988307-43990240:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.23419189453125	2	498.316035	994.617516	-0.35999	-0.00017939	-0.31972	-0.00015932	-0.67971	-0.00033871	498.3156890403049	56.888	0.41261	56.721	56.52	56.932	-0.1672					16	10	2	0	0	0	0.024535	1	6210	6210		25.45	17.76	1	147040	+		43092	32710	29768	29819	48520	48520					0.11999210236660929
LLHYDPVVK	9	Unmodified	_LLHYDPVVK_					0	0	0		ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.3009643554688	2	542.313492	1082.61243	-1.2598	-0.00068319	0.44042	0.00023885	-0.81934	-0.00044434	542.3136029241053	65.277	0.32481	65.025	64.823	65.148	-0.25112					12	7	2	0	0	0	0.023817	1	7420	7420		71.296	25.323	1	312680			43093	10805	29769	29820	48521	48521					0.07442906374035374
LLHYDPVVK	9	Unmodified	_LLHYDPVVK_					0	0	0		ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	ENSG00000243147|ENST00000296102|MRPL33	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.313492	1082.61243	-1.5985	-0.0008669	0.52147	0.0002828	-1.077	-0.0005841	542.3136048435059	65.246	0.36751	65.043	64.859	65.226	-0.20254	0.069063	-0.00026591	NaN	71.296	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356690			43094	10805	29769	29820							0.07442906374035374
LLIAALSHDL	10	Unmodified	_LLIAALSHDL_					0	0	0		ENSG00000138735|ENST00000354960|PDE5A;nc|ENSG00000138735|O76074-2|PDE5A;ENST00000513594.5_1_4:120438269-120460171:-|nuORF	ENSG00000138735|ENST00000354960|PDE5A	ENSG00000138735|ENST00000354960|PDE5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.3004150390625	2	533.318774	1064.623	-0.42948	-0.00022905	0.204	0.0001088	-0.22548	-0.00012025	533.8194907156291	61.353	0.39923	61.126	60.899	61.298	-0.22663					16	10	2	0	0	0	0.03519	1	7038	7038		44.117	5.3107	1	216610			43095	5273	29770	29821	48522	48522					0.09326889028466212
LLIALGALQ	9	Unmodified	_LLIALGALQ_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.8633117675781	2	456.299853	910.585153	-0.69887	-0.00031889	1.6913	0.00077173	0.99242	0.00045284	456.3002252781168	38.095	0.46851	37.876	37.681	38.15	-0.21849					20	13	2	0	0	0	0.024293	1	3133	3133		42.474	7.2737	1	160770			43096	6164	29771	29822	48523	48523					0.1262842283365444
LLIAPSSY	8	Unmodified	_LLIAPSSY_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.2460632324219	2	432.247286	862.48002	0.37397	0.00016165	-1.2692	-0.00054859	-0.8952	-0.00038695	432.2468884496756	93.516	1.3321	93.394	92.927	94.259	-0.12215					76	30	4	0	0	0	0.9224	2	11539	11525;11539		49.211	10.189	1	1609800	+		43097	22193	29772	29823	48524;48525	48525					0.04327881637232167
LLIAPSSY	8	Unmodified	_LLIAPSSY_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.2464294433594	2	432.247286	862.48002	0.3533	0.00015271	-1.4524	-0.0006278	-1.0991	-0.00047509	432.2468585643377	93.595	1.2109	93.451	93.002	94.212	-0.14411					71	27	5	0	0	0	0.98906	1	11503	11503		39.021	0	1	1643700	+		43098	22193	29772	29823	48526	48526					0.04327881637232167
LLIAQVPSV	9	Unmodified	_LLIAQVPSV_					0	0	0			REV__ENST00000608290.1_1_22:46409584-46410459:+|nuORF	REV__ENST00000608290.1_1_22:46409584-46410459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.7692565917969	2	470.29731	938.580068	-0.95659	-0.00044988	0.53146	0.00024994	-0.42513	-0.00019994	470.29742338126727	65.102	0.73302	64.9	64.657	65.39	-0.20254					36	17	3	0	0	0	0.024447	1	7441	7441		49.442	17.487	1	684140	+		43099	35966	29773	29824	48527	48527					0.10832118971040927
LLICKARAK	9	Unmodified	_LLICKARAK_					0	0	0			REV__ENSG00000166111|ENST00000610966|SVOP	REV__ENSG00000166111|ENST00000610966|SVOP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.29248046875	2	508.325879	1014.63721	-0.61142	-0.0003108	-4.1237	-0.0020962	-4.7351	-0.002407	508.3236207508488	74.48	0.54865	74.49	74.224	74.773	0.0096512					22	12	2	0	0	0	0.024412	1	9017	9017		31.955	1.4512	1	98612	+		43100	25969	29774	29825	48528	48528					0.13047262975760532
LLICRRKI	8	Unmodified	_LLICRRKI_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|45|2|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|45|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8338623046875	2	507.833872	1013.65319	-0.83577	-0.00042443	0.22765	0.00011561	-0.60812	-0.00030882	507.8337928877734	105.04	0.48005	104.91	104.71	105.19	-0.13099					48	17	4	0	0	0	0.95417	1	13086	13086		44.531	0	1	244340	+		43101	36258	29775	29826	48529	48529					0.1469096921267692
LLIDNEPIE	9	Unmodified	_LLIDNEPIE_					0	0	0			REV__nc|ENSG00000163939|Q86U86-5|PBRM1	REV__nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2841796875	2	528.284597	1054.55464	0.040374	2.1329E-05	-0.17496	-9.2431E-05	-0.13459	-7.1102E-05	528.2843800053182	87.191	1.5307	87.053	86.136	87.667	-0.13734					93	35	5	0	0	0	0.32811	1	10597	10597		71.877	2.2498	1	2169600	+		43102	25662	29776	29827	48530	48530					0.029545996579372513
LLIEAPTQ	8	Unmodified	_LLIEAPTQ_					0	0	0			REV__ENST00000558282.5_1_15:85734698-85737265:+|nuORF	REV__ENST00000558282.5_1_15:85734698-85737265:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.7745056152344	2	442.758018	883.501483	-0.50269	-0.00022257	-2.3725	-0.0010505	-2.8752	-0.001273	442.75686934931844	21.795	0.80308	21.795	21.441	22.245	0					27	16	3	0	0	0	0.027866	1	698	698		25.45	2.4077	1	108290	+		43103	35094	29777	29828	48531	48531					0.055072666659384595
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A161Gfs*?|1|0.16|ENSG00000233276|chr3:49357493-49357518|CACCAGGAACTTCTCAAAGTTCCAGG/-|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2917785644531	2	486.292225	970.569897	-0.48161	-0.0002342	-0.35568	-0.00017296	-0.83729	-0.00040717	486.2921821793508	81.852	4.4466	81.852	81.138	85.584	0					210	105	6	0	0	0	0.0089939	12	10196	10174;10184;10196;10208;10220;10232;10244;10258;10270;10282;10295;10306		237.81	98.988	1	61117000			43104	10711	29778	29829	48532;48533;48534;48535;48536;48537;48538;48539;48540;48541;48542;48543	48534					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A161Gfs*?|1|0.16|ENSG00000233276|chr3:49357493-49357518|CACCAGGAACTTCTCAAAGTTCCAGG/-|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2921142578125	2	486.292225	970.569897	0.24926	0.00012121	-1.1081	-0.00053884	-0.8588	-0.00041763	486.2917919209839	81.984	4.1888	81.874	81.155	85.344	-0.11006					188	99	5	0	0	0	0.0089939	11	10168	10157;10168;10179;10191;10203;10215;10228;10240;10253;10265;10277		237.81	94.706	1	56395000			43105	10711	29778	29829	48544;48545;48546;48547;48548;48549;48550;48551;48552;48553;48554	48545					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A161Gfs*?|1|0.16|ENSG00000233276|chr3:49357493-49357518|CACCAGGAACTTCTCAAAGTTCCAGG/-|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2922668457031	2	486.292225	970.569897	-0.85883	-0.00041764	0.050482	2.4549E-05	-0.80835	-0.00039309	486.2923900224475	81.808	2.2025	81.833	80.97	83.172	0.025711					152	52	5	0	0	0	0.010658	12	10144	10098;10108;10120;10132;10144;10156;10168;10181;10194;10206;10217;10228		258.1	87.514	1	61304000			43106	10711	29778	29829	48555;48556;48557;48558;48559;48560;48561;48562;48563;48564;48565;48566	48559					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A161Gfs*?|1|0.16|ENSG00000233276|chr3:49357493-49357518|CACCAGGAACTTCTCAAAGTTCCAGG/-|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.2921447753906	2	486.292225	970.569897	0.36368	0.00017686	-1.0886	-0.00052936	-0.72488	-0.0003525	486.29172366389264	81.9	2.5608	81.671	80.98	83.541	-0.2289					149	59	3	0	0	0	0.0088851	11	9819	9819;9829;9841;9853;9865;9877;9891;9903;9916;9928;9941		275.71	84.083	1	28362000			43107	10711	29778	29829	48567;48568;48569;48570;48571;48572;48573;48574;48575;48576;48577	48567					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A161Gfs*?|1|0.16|ENSG00000233276|chr3:49357493-49357518|CACCAGGAACTTCTCAAAGTTCCAGG/-|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.29205322265625	2	486.292225	970.569897	0.19853	9.6541E-05	-0.96626	-0.00046988	-0.76773	-0.00037334	486.291769283485	81.916	3.7336	81.722	81.09	84.823	-0.19333					178	87	3	0	0	0	0.0089939	11	9843	9832;9843;9855;9867;9879;9892;9904;9917;9931;9942;9954		237.81	94.706	1	27348000			43108	10711	29778	29829	48578;48579;48580;48581;48582;48583;48584;48585;48586;48587;48588	48579					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF;GPX1|p.A161Gfs*?|1|0.16|ENSG00000233276|chr3:49357493-49357518|CACCAGGAACTTCTCAAAGTTCCAGG/-|frameshift_variant;nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.2919921875	2	486.292225	970.569897	-0.41246	-0.00020058	-0.34365	-0.00016712	-0.75612	-0.00036769	486.29205582172006	81.861	4.2524	81.719	81.026	85.279	-0.14249					228	99	5	0	0	0	0.0089939	11	9834	9811;9822;9834;9846;9859;9871;9884;9897;9910;9921;9940		258.1	100.77	1	25898000			43109	10711	29778	29829	48589;48590;48591;48592;48593;48594;48595;48596;48597;48598;48599	48591					0.08343511245811897
LLIFLSWL	8	Unmodified	_LLIFLSWL_					0	0	0			REV__ENST00000258739.8_1_7:6501076-6501211:-|nuORF	REV__ENST00000258739.8_1_7:6501076-6501211:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.8137512207031	2	502.812596	1003.61064	-0.30262	-0.00015216	2.2596	0.0011362	1.957	0.000984	502.8138186792779	96.134	1.9926	96.134	95.735	97.727	0					171	45	6	0	0	0	1.0472	1	12278	12278		29.842	0	1	20832000	+		43110	29581	29779	29830	48600	48600					0.10897897356085195
LLIFNTFW	8	Unmodified	_LLIFNTFW_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.2898559570312	2	527.292028	1052.5695	-0.72339	-0.00038144	-1.2215	-0.0006441	-1.9449	-0.0010255	527.2911177964082	104.14	0.60208	104.14	103.9	104.5	0					39	13	4	0	0	0	0.77775	1	13365	13365		60.972	5.4677	1	792640	+		43111	20677	29780	29831	48601	48601					0.04532136316629476
LLIFNTFW	8	Unmodified	_LLIFNTFW_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.2904052734375	2	527.292028	1052.5695	0.2692	0.00014195	-2.4367	-0.0012849	-2.1676	-0.0011429	527.2904909579391	104.17	0.90962	104.17	103.94	104.85	-0.0032196					50	23	3	0	0	0	0.71833	1	13296	13296		65.803	7.9919	1	708410	+		43112	20677	29780	29831	48602	48602					0.04532136316629476
LLIFWLIY	8	Unmodified	_LLIFWLIY_					0	0	0		ENST00000258886.12_1_15:78792554-78792710:+|nuORF	ENST00000258886.12_1_15:78792554-78792710:+|nuORF	ENST00000258886.12_1_15:78792554-78792710:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2904663085938	2	540.828246	1079.64194	-0.84475	-0.00045686	-3.6217	-0.0019587	-4.4665	-0.0024156	540.826234477263	66.574	0.29718	66.35	66.106	66.403	-0.22374					11	7	2	0	0	0	0.027866	1	7636	7636		54.895	0	1	265380			43113	11429	29781	29832	48603	48603					0.1053047039017656
LLIFWLIY	8	Unmodified	_LLIFWLIY_					0	0	0		ENST00000258886.12_1_15:78792554-78792710:+|nuORF	ENST00000258886.12_1_15:78792554-78792710:+|nuORF	ENST00000258886.12_1_15:78792554-78792710:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7801513671875	2	540.828246	1079.64194	-1.0317	-0.00055795	-0.98516	-0.0005328	-2.0168	-0.0010907	540.8277361215427	80.801	0.49074	80.655	80.532	81.023	-0.146					17	11	2	0	0	0	0.027866	1	9670	9670		33.493	0	1	81685			43114	11429	29781	29832	48604	48604					0.1053047039017656
LLIFWLIY	8	Unmodified	_LLIFWLIY_					0	0	0		ENST00000258886.12_1_15:78792554-78792710:+|nuORF	ENST00000258886.12_1_15:78792554-78792710:+|nuORF	ENST00000258886.12_1_15:78792554-78792710:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.828246	1079.64194	0.0086709	4.6894E-06	-2.5464	-0.0013772	-2.5377	-0.0013725	540.8271849080514	80.932	0.44775	80.725	80.548	80.996	-0.20633	0.035377	-0.0011105	NaN	33.493	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123280			43115	11429	29781	29832							0.1053047039017656
LLIFYLSF	8	Unmodified	_LLIFYLSF_					0	0	0		CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1;nc|ENSG00000134376|P82279-5|CRB1;ENST00000475659.1_1_1:197237491-197326220:+|nuORF	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2868957519531	2	508.296779	1014.57901	0.39527	0.00020091	4.3036	0.0021875	4.6988	0.0023884	508.2981580101849	53.098	0.43559	52.84	52.603	53.039	-0.25838					16	10	2	0	0	0	0.027866	1	5519	5519		46.766	2.2354	1	173060			43116	584	29782	29833	48605	48605					0.07229904602149873
LLIGASGVRE	10	Unmodified	_LLIGASGVRE_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.818603515625	2	507.800749	1013.58694	0.83418	0.0004236	-0.58958	-0.00029939	0.2446	0.00012421	507.7998750595671	22.925	0.41764	22.734	22.479	22.897	-0.19117					17	8	3	0	0	0	0.03519	1	844	844		75.043	8.614	1	90318	+		43117	23932	29783	29834	48606	48606					0.0806943185162936
LLIGKFGISQ	10	Unmodified	_LLIGKFGISQ_					0	0	0			REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	REV__ENST00000577191.5_1_17:7123303-7125473:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.326171875	2	538.329142	1074.64373	-0.74783	-0.00040258	-3.1387	-0.0016897	-3.8866	-0.0020923	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.1286	1	12423	12423		25.574	1.0549	1	21993000	+		43118	20480	29784	29835	48607	48607					0.10939479408125408
LLIGLMLMWFF	11	Unmodified	_LLIGLMLMWFF_					0	0	0			REV__ENSG00000153292|ENST00000371253|ADGRF1	REV__ENSG00000153292|ENST00000371253|ADGRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.76055908203125	3	461.923763	1382.74946	-0.21466	-9.9156E-05	-0.37414	-0.00017282	-0.5888	-0.00027198	462.2579992682302	48.843	0.50281	48.909	48.622	49.125	0.066795					20	13	3	0	0	0	0.024761	1	4906	4906		27.047	2.8155	1	124420	+		43119	24898	29785	29836	48608	48608					0.07339355937710934
LLIGQTEV	8	Unmodified	_LLIGQTEV_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7582702636719	2	436.758018	871.501483	-0.55206	-0.00024112	0.69518	0.00030363	0.14312	6.2509E-05	436.75821477606297	66.458	0.53235	66.235	65.945	66.478	-0.22374					31	13	3	0	0	0	0.6248	1	7628	7628		73.975	0	1	1048700			43120	4276	29786	29837	48609	48609					0.060592666659431416
LLIGSKQFGL	10	Unmodified	_LLIGSKQFGL_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3240966796875	2	538.329142	1074.64373	-0.2783	-0.00014982	-2.3463	-0.0012631	-2.6246	-0.0014129	538.3279196802408	102.39	0.67706	102.27	102	102.67	-0.12666					20	15	2	0	0	0	1.1197	1	12729	12729		20.947	0	1	44196			43121	9893	29787	29838	48610	48610					0.10939479408125408
LLIGTAKDI	9	Unmodified	_LLIGTAKDI_					0	0	0			REV__nc|ENSG00000172053|P47897-2|QARS1	REV__nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2941589355469	2	472.294768	942.574983	0.45697	0.00021582	-0.26862	-0.00012687	0.18835	8.8955E-05	472.29430970932697	32.301	0.561	32.108	31.856	32.417	-0.19261					27	12	3	0	0	0	0.27161	1	2219	2219		79.451	2.6769	1	743410	+		43122	26630	29788	29839	48611	48611					0.10139815108414041
LLIHPTRF	8	Unmodified	_LLIHPTRF_					0	0	0		ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8034973144531	2	498.803094	995.591636	-0.50951	-0.00025414	1.3025	0.00064967	0.79295	0.00039552	498.8036589675882	52.964	1.3147	52.817	52.607	53.921	-0.14723					67	35	2	0	0	0	0.97924	1	5689	5689		40.573	7.057	1	12483000			43123	13874	29789	29840	48612	48612					0.09366360785031702
LLIHPTRF	8	Unmodified	_LLIHPTRF_					0	0	0		ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.8039855957031	2	498.803094	995.591636	-0.29606	-0.00014768	1.4127	0.00070466	1.1166	0.00055698	498.8036455447494	52.863	1.3878	52.673	52.389	53.777	-0.18982					105	37	5	0	0	0	1.0133	1	5511	5511		35.201	1.6851	1	10595000			43124	13874	29789	29840	48613	48613					0.09366360785031702
LLIICKKF	8	Unmodified	_LLIICKKF_					0	0	0		nc|nan|Q9HD87|C6orf50	nc|nan|Q9HD87|C6orf50	nc|nan|Q9HD87|C6orf50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.31414794921875	2	489.314449	976.614345	0.44356	0.00021704	-1.5098	-0.00073878	-1.0663	-0.00052174	489.31359152290486	94.352	0.88556	94.23	93.842	94.727	-0.12215					55	20	4	0	0	0	1.0574	1	11645	11645		15.636	0.97212	1	1081100			43125	18859	29790	29841	48614	48614					0.1251024385829851
LLIIFHTSF	9	Unmodified	_LLIIFHTSF_					0	0	0			REV__ENST00000297071.8_1_7:23544966-23545065:-|nuORF	REV__ENST00000297071.8_1_7:23544966-23545065:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7896118164062	2	545.81841	1089.62227	-0.84901	-0.0004634	-0.32461	-0.00017718	-1.1736	-0.00064058	545.8181061673451	31.561	1.7424	31.409	30.426	32.169	-0.15231					65	42	2	0	0	0	0.024386	1	1995	1995		18.324	0	1	193460	+		43126	30008	29791	29842	48615	48615					0.08104094379405069
LLIIIMGGKI	10	Unmodified	_LLIIIMGGKI_					0	0	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7861938476562	2	535.853938	1069.69332	-0.45428	-0.00024343	3.4429	0.0018449	2.9886	0.0016015	535.8553384865796	55.97	0.24675	55.97	55.892	56.139	0					10	6	2	0	0	0	0.03519	1	6220	6220		38.806	18.809	1	88804	+		43127	21141	29792	29843	48616	48616					0.1612647109259342
LLIILKEI	8	Unmodified	_LLIILKEI_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.83428955078125	2	477.833529	953.652505	-0.88629	-0.0004235	1.2692	0.00060646	0.3829	0.00018296	477.83392867359913	105.5	0.89895	105.37	105.26	106.16	-0.13099					63	33	3	0	0	0	1.0574	1	13140	13140		26.796	2.5934	1	1015200			43128	1359	29793	29844	48617	48617					0.17382453044604063
LLIKDCSLEAQ	11	Carbamidomethyl (C)	_LLIKDC(Carbamidomethyl (C))SLEAQ_	LLIKDC(1)SLEAQ		LLIKDC(44)SLEAQ		0	1	0		ENST00000486200.1_1_14:51258793-51261178:-|nuORF	ENST00000486200.1_1_14:51258793-51261178:-|nuORF	ENST00000486200.1_1_14:51258793-51261178:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	645.3400268554688	2	645.34212	1288.66969	-0.091827	-5.926E-05	-2.8978	-0.0018701	-2.9896	-0.0019293	645.3400652365837	54.377	0.79939	54.172	53.85	54.65	-0.20442					62	21	4	0	0	0	0.96599	1	5766	5766		44.377	9.2252	1	4477000			43129	15340	29794	29845	48618	48618	200				0.03689960797441927
LLIKDCSLEAQ	11	Carbamidomethyl (C)	_LLIKDC(Carbamidomethyl (C))SLEAQ_					0	1	0		ENST00000486200.1_1_14:51258793-51261178:-|nuORF	ENST00000486200.1_1_14:51258793-51261178:-|nuORF	ENST00000486200.1_1_14:51258793-51261178:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	645.34212	1288.66969	0.37562	0.0002424	-3.1869	-0.0020566	-2.8113	-0.0018142	645.3398259053688	53.851	0.55567	53.948	53.738	54.294	0.097404	-0.11189	-0.00027075	NaN	44.377	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604660			43130	15340	29794	29845			200				0.03689960797441927
LLIKDVVGYN	10	Unmodified	_LLIKDVVGYN_					0	0	0		nc|ENSG00000103888|Q8WUJ3-2|CEMIP;ENSG00000103888|ENST00000394685|CEMIP	nc|ENSG00000103888|Q8WUJ3-2|CEMIP	nc|ENSG00000103888|Q8WUJ3-2|CEMIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297729492188	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.089	1	11106	11106		34.173	1.3601	1	4116000			43131	2532	29795	29846	48619	48619					0.0881915819995811
LLIKITKR	8	Unmodified	_LLIKITKR_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2421875	2	492.850045	983.685536	4.4295	0.0021831	-4.1023	-0.0020218	0.32723	0.00016127	492.847717845667	17.646	0.29024	17.396	17.23	17.52	-0.25049					12	5	3	0	0	0	0.027866	1	171	171		8.8223	1.132	1	42996	+		43132	23665	29796	29847	48620	48620					0.1930407988730849
LLIKKYENV	9	Unmodified	_LLIKKYENV_					0	0	0			REV__ENST00000491210.1_1_1:158811943-158812264:+|nuORF	REV__ENST00000491210.1_1_1:158811943-158812264:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3377075195312	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	0.75397	1	12703	12703		42.396	3.1433	1	13153000	+		43133	25593	29797	29848	48621	48621					0.11535748579603933
LLIKKYENV	9	Unmodified	_LLIKKYENV_					0	0	0			REV__ENST00000491210.1_1_1:158811943-158812264:+|nuORF	REV__ENST00000491210.1_1_1:158811943-158812264:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3401489257812	2	560.342249	1118.66995	-0.071418	-4.0019E-05	-3.7355	-0.0020932	-3.8069	-0.0021332	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	0.98697	1	12650	12650		23.042	0.46283	1	13448000	+		43134	25593	29797	29848	48622	48622					0.11535748579603933
LLIKLRVPIAQ	11	Unmodified	_LLIKLRVPIAQ_					0	0	0			REV__ENSG00000169594|ENST00000345382|BNC1	REV__ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	632.4342041015625	2	632.42919	1262.84383	1.3725	0.00086802	0.11583	7.3255E-05	1.4883	0.00094127	632.4288029042639	107.71	0.34282	107.71	107.57	107.91	0					33	17	3	0	0	0	1.0898	1	13834	13834		14.137	4.4315	1	2468000	+		43135	26380	29798	29849	48623	48623					0.22291954075762987
LLIKLRVPIAQ	11	Unmodified	_LLIKLRVPIAQ_					0	0	0			REV__ENSG00000169594|ENST00000345382|BNC1	REV__ENSG00000169594|ENST00000345382|BNC1	MSMS	OPSCC_40_ClassI_Rep-3	6	632.4301147460938	2	632.42919	1262.84383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	107.32	106.82	107.82	-0.15772								0	0	0	1.5136	1	13341	13341		14.865	2.0532	1		+		43136	26380	29798	29849	48624	48624					0.22291954075762987
LLIKPLENF	9	Unmodified	_LLIKPLENF_					0	0	0		ENSG00000079482|ENST00000355520|OPHN1;nc|ENSG00000079482|O60890-2|OPHN1;OPHN1|p.E176Rfs*5|1|0.15|ENSG00000079482|chrX:68213934-68213935|-/A|frameshift_variant	ENSG00000079482|ENST00000355520|OPHN1	ENSG00000079482|ENST00000355520|OPHN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8296508789062	2	543.831517	1085.64848	-0.084144	-4.576E-05	-0.18886	-0.00010271	-0.273	-0.00014847	543.8312062375346	74.543	0.80163	74.361	74.049	74.851	-0.18279					46	18	4	0	0	0	0.35646	1	8802	8802		68.787	1.2932	1	1175700			43137	1668	29799	29850	48625	48625					0.10908363550879585
LLIKSSGLI	9	Unmodified	_LLIKSSGLI_					0	0	0			REV__ENST00000555658.5_1_14:89730286-89817056:-|nuORF	REV__ENST00000555658.5_1_14:89730286-89817056:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.3125915527344	2	472.312961	942.611368	-0.72458	-0.00034223	0.016076	7.5931E-06	-0.70851	-0.00033464	472.3128743993293	45.024	0.82772	44.813	44.554	45.382	-0.21109					55	22	4	0	0	0	0.2508	1	4248	4248		82.241	2.7895	1	6372400	+		43138	35013	29800	29851	48626	48626					0.13776692005160385
LLILAMNQS	9	Unmodified	_LLILAMNQS_					0	0	0			REV__ENST00000491840.1_1_13:26141407-26501380:+|nuORF	REV__ENST00000491840.1_1_13:26141407-26501380:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.77996826171875	2	501.786253	1001.55795	-0.29072	-0.00014588	-3.1835	-0.0015974	-3.4742	-0.0017433	501.78456945687157	52.703	0.91108	52.703	52.391	53.302	0					22	13	2	0	0	0	0.024381	1	5750	5750		29.15	0	1	598590	+		43139	23330	29801	29852	48627	48627					0.057235712309761766
LLILAPSEAEY	11	Unmodified	_LLILAPSEAEY_					0	0	0		nc|ENSG00000125485|Q9H8H2|DDX31;ENSG00000125485|ENST00000372159|DDX31	nc|ENSG00000125485|Q9H8H2|DDX31	nc|ENSG00000125485|Q9H8H2|DDX31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	609.7562255859375	2	609.834454	1217.65436	-0.30192	-0.00018412	-1.7504	-0.0010675	-2.0523	-0.0012516	609.8333781918703	53.155	0.57376	52.965	52.672	53.245	-0.18981					24	14	3	0	0	0	0.024731	1	5531	5531		5.5578	0	1	212190			43140	18244	29802	29853	48628	48628					0.05423417271913422
LLILDDVW	8	Unmodified	_LLILDDVW_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-6|APAF1;APAF1|p.A304Qfs*11|1|0.19|ENSG00000120868|chr12:98662760-98662760|G/-|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.76873779296875	2	493.781493	985.548434	0.73505	0.00036295	-4.1349	-0.0020417	-3.3998	-0.0016788	493.77929295533085	70.296	0.60289	70.003	69.467	70.07	-0.29292					24	14	3	0	0	0	0.027866	1	8420	8420		35.201	8.1534	1	472830			43141	103	29803	29854	48629	48629					0.05508126217091558
LLILDHIY	8	Unmodified	_LLILDHIY_					0	0	0		nc|ENSG00000116833|O00482-3|NR5A2;nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2	nc|ENSG00000116833|O00482-3|NR5A2	nc|ENSG00000116833|O00482-3|NR5A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.73773193359375	2	500.29731	998.580068	-1.3491	-0.00067496	-2.9866	-0.0014942	-4.3357	-0.0021691	500.2957462694922	33.56	0.56028	33.394	32.918	33.479	-0.16565					17	13	2	0	0	0	0.027866	1	2391	2391		37.028	0	1	76645			43142	3584	29804	29855	48630	48630					0.08072118971051623
LLILGLHCAP	10	Unmodified	_LLILGLHCAP_					0	0	0		CON__Q9TT36	CON__Q9TT36	CON__Q9TT36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2875366210938	2	525.312438	1048.61032	-0.487	-0.00025583	-2.0961	-0.0011011	-2.5831	-0.0013569	525.310701841284	82.911	1.4996	82.937	82.402	83.901	0.026558					56	34	3	0	0	0	0.03519	1	10230	10230		35.201	1.6851	1	115120		+	43143	574	29805	29856	48631	48631					0.08796154364586073
LLILGPPQ	8	Unmodified	_LLILGPPQ_					0	0	0			REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7748107910156	2	425.773471	849.53239	-0.77888	-0.00033163	4.3224	0.0018404	3.5436	0.0015088	425.7752383126621	43.079	2.1122	43.079	42.75	44.862	0					140	59	5	0	0	0	1.0133	1	4033	4033		35.201	5.3592	1	17325000	+		43144	37649	29806	29857	48632	48632					0.10160464770854105
LLILGPPQ	8	Unmodified	_LLILGPPQ_					0	0	0			REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.77490234375	2	425.773471	849.53239	0.19274	8.2063E-05	2.6344	0.0011217	2.8272	0.0012037	425.7746312811681	42.075	1.1896	42.101	41.636	42.825	0.026012					124	33	6	0	0	0	1.0574	1	3802	3802		21.702	4.9974	1	66524000	+		43145	37649	29806	29857	48633	48633					0.10160464770854105
LLILGPPQ	8	Unmodified	_LLILGPPQ_					0	0	0			REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	REV__SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|33|3|sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	425.773471	849.53239	-0.44573	-0.00018978	3.8346	0.0016327	3.3889	0.0014429	425.77499342824996	43.306	1.947	43.08	42.753	44.7	-0.22597	0.0018597	0.00014626	NaN	35.201	119	52	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11576000	+		43146	37649	29806	29857							0.10160464770854105
LLILGPQVE	9	Unmodified	_LLILGPQVE_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7818298339844	2	491.302593	980.590633	-1.0083	-0.00049538	-0.61553	-0.00030241	-1.6238	-0.00079779	491.3022008075515	62.752	0.46875	62.513	62.394	62.863	-0.23926					19	11	2	0	0	0	0.024386	1	7302	7302		42.474	0	1	439020			43147	9482;18594	29807	29858	48634	48634					0.09956101625471092
LLILGPQVE	9	Unmodified	_LLILGPQVE_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7814025878906	2	491.302593	980.590633	-0.46501	-0.00022846	-1.1689	-0.00057429	-1.6339	-0.00080275	491.3019484434469	62.574	0.48673	62.637	62.367	62.853	0.062767					19	11	2	0	0	0	0.024386	1	7200	7200		25.45	1.2474	1	266630			43148	9482;18594	29807	29858	48635	48635					0.09956101625471092
LLILHLLVIMH	11	Unmodified	_LLILHLLVIMH_					0	0	0		ENST00000418058.1_1_1:65280440-65280524:+|nuORF;ENST00000294428.7_1_1:65280416-65296531:+|nuORF	ENST00000418058.1_1_1:65280440-65280524:+|nuORF	ENST00000418058.1_1_1:65280440-65280524:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.2833251953125	3	438.949188	1313.82573	1.3481	0.00059173	-1.0487	-0.00046034	0.29933	0.00013139	439.28304206924076	16.889	0.29763	16.736	16.609	16.907	-0.15376					10	5	3	0	0	0	1.1027	1	122	122		10.587	1.375	1	44479			43149	11816	29808	29859	48636	48636					0.18137495829387262
LLILIEQHS	9	Unmodified	_LLILIEQHS_					0	0	0			REV__ENSG00000173226|ENST00000310864|IQCB1	REV__ENSG00000173226|ENST00000310864|IQCB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.83447265625	2	533.318774	1064.623	-0.46628	-0.00024868	3.6062	0.0019233	3.14	0.0016746	533.3207031220692	80.858	0.3688	80.713	80.612	80.981	-0.146					14	8	2	0	0	0	0.024405	1	9733	9733		53.351	9.2347	1	105110	+		43150	26754	29809	29860	48637	48637					0.09326889028466212
LLILIEQHS	9	Unmodified	_LLILIEQHS_					0	0	0			REV__ENSG00000173226|ENST00000310864|IQCB1	REV__ENSG00000173226|ENST00000310864|IQCB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.318774	1064.623	-1.3535	-0.00072187	0.65733	0.00035057	-0.69621	-0.0003713	533.3187778781455	80.696	0.42357	80.545	80.174	80.598	-0.15169	-0.14124	-0.0026118	NaN	44.117	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70421	+		43151	26754	29809	29860							0.09326889028466212
LLILIEQHS	9	Unmodified	_LLILIEQHS_					0	0	0			REV__ENSG00000173226|ENST00000310864|IQCB1	REV__ENSG00000173226|ENST00000310864|IQCB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.318774	1064.623	-0.085396	-4.5543E-05	3.3051	0.0017627	3.2197	0.0017171	533.3203680502996	80.956	0.31936	80.718	80.569	80.889	-0.23784	0.032482	0.00021244	NaN	44.117	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133370	+		43152	26754	29809	29860							0.09326889028466212
LLILILPEP	9	Unmodified	_LLILILPEP_					0	0	0		ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.80328369140625	2	510.838811	1019.66307	-0.30904	-0.00015787	-2.5988	-0.0013276	-2.9078	-0.0014854	510.8374282619186	50.806	3.5033	50.806	49.508	53.011	0					119	97	2	0	0	0	0.024517	1	5630	5630		26.796	1.3459	1	346230			43153	4013	29810	29861	48638	48638					0.15402435699036232
LLILLGHCGE	10	Unmodified	_LLILLGHCGE_					0	0	0		ENST00000530286.5_1_11:34643613-34643706:+|nuORF	ENST00000530286.5_1_11:34643613-34643706:+|nuORF	ENST00000530286.5_1_11:34643613-34643706:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2999877929688	2	534.299527	1066.5845	-0.34932	-0.00018664	-4.4558	-0.0023807	-4.8051	-0.0025674	534.2961511381582	61.428	0.34975	61.428	61.255	61.605	0					10	8	2	0	0	0	0.03519	1	7101	7101		29.15	8.2026	1	66866			43154	16231	29811	29862	48639	48639					0.05387260122324733
LLILLPGLSP	10	Unmodified	_LLILLPGLSP_					0	0	0			REV__ENST00000306072.9_1_15:89198758-89198920:+|nuORF	REV__ENST00000306072.9_1_15:89198758-89198920:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.3242797851562	2	518.344261	1034.67397	-0.37141	-0.00019252	-4.1178	-0.0021344	-4.4892	-0.0023269	518.3417559531513	41.285	0.3154	41.308	41.182	41.498	0.023006					12	8	2	0	0	0	0.03519	1	3640	3640		16.473	0	1	116730	+		43155	30121	29812	29863	48640	48640					0.15801838073343788
LLILLSFIN	9	Unmodified	_LLILLSFIN_					0	0	0			REV__L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|9|1|anti-sense	REV__L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|9|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7703247070312	2	523.336436	1044.65832	-0.36892	-0.00019307	0.10552	5.5221E-05	-0.2634	-0.00013785	523.3363654476634	72.85	0.51668	72.573	72.282	72.799	-0.2769					17	11	2	0	0	0	0.024412	1	8567	8567		40.573	7.057	1	65922	+		43156	36197	29813	29864	48641	48641					0.13777551556290746
LLILLTMW	8	Unmodified	_LLILLTMW_					0	0	0		ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2867736816406	2	501.806457	1001.59836	0.047103	2.3637E-05	-4.4673	-0.0022417	-4.4202	-0.0022181	501.8040769348184	63.421	0.38948	63.163	63	63.39	-0.25824					24	9	4	0	0	0	0.027866	1	7141	7141		35.201	9.7505	1	310420			43157	10894	29814	29865	48642	48642					0.09762537621395495
LLILQANEV	9	Unmodified	_LLILQANEV_					0	0	0			REV__ENST00000604430.1_1_16:29332285-29370594:+|nuORF	REV__ENST00000604430.1_1_16:29332285-29370594:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7518005371094	2	506.8055	1011.59645	-0.61451	-0.00031144	0.31966	0.00016201	-0.29485	-0.00014943	506.8054069166974	67.221	0.67007	66.983	66.796	67.466	-0.23814					30	15	3	0	0	0	0.024427	1	7793	7793		34.173	8.5985	1	1163400	+		43158	35909	29815	29866	48643	48643					0.09111200137135711
LLILQANEV	9	Unmodified	_LLILQANEV_					0	0	0			REV__ENST00000604430.1_1_16:29332285-29370594:+|nuORF	REV__ENST00000604430.1_1_16:29332285-29370594:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.8055	1011.59645	0.39304	0.00019919	-0.79182	-0.0004013	-0.39878	-0.0002021	506.80499928208945	67.318	0.71103	67.068	66.791	67.502	-0.25015	0.035974	-0.00061403	NaN	19.997	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1010300	+		43159	35909	29815	29866							0.09111200137135711
LLILQANEV	9	Unmodified	_LLILQANEV_					0	0	0			REV__ENST00000604430.1_1_16:29332285-29370594:+|nuORF	REV__ENST00000604430.1_1_16:29332285-29370594:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.8055	1011.59645	-0.4656	-0.00023597	0.26918	0.00013642	-0.19642	-9.9549E-05	506.80540469324376	67.269	0.70646	67.045	66.816	67.523	-0.22374	0.013186	0.00046141	NaN	19.997	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	822720	+		43160	35909	29815	29866							0.09111200137135711
LLILSRAM	8	Unmodified	_LLILSRAM_					0	0	0		ENSG00000168924|ENST00000302787|LETM1;ENST00000511977.1_1_4:1824675-1834605:-|nuORF;LETM1|p.S413L|1|0.11|ENSG00000168924|chr4:1823738-1823738|G/A|missense_variant	ENSG00000168924|ENST00000302787|LETM1;LETM1|p.S413L|1|0.11|ENSG00000168924|chr4:1823738-1823738|G/A|missense_variant	ENSG00000168924|ENST00000302787|LETM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7881164550781	2	458.786056	915.557558	-0.24715	-0.00011339	2.6403	0.0012113	2.3932	0.001098	458.78724723277566	92.233	1.8673	92.224	91.752	93.619	-0.0082932					114	44	3	0	0	0	1.0574	1	11712	11712		25.45	1.2474	1	30570000			43161	7883;17914	29816	29867	48644	48644					0.09640196301768356
LLILTSNFN	9	Unmodified	_LLILTSNFN_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7987060546875	2	517.797675	1033.5808	0.49012	0.00025378	2.8186	0.0014595	3.3088	0.0017133	517.7991702290866	104.61	2.3703	104.45	104.08	106.46	-0.16484					233	88	5	0	0	0	0.62163	1	13141	13141		51.335	1.8939	1	26826000	+		43162	19872	29817	29868	48645	48645					0.06534913620112093
LLIMRAAS	8	Unmodified	_LLIMRAAS_					0	0	0		ENST00000539869.2_1_6:166075455-166075494:-|nuORF	ENST00000539869.2_1_6:166075455-166075494:-|nuORF	ENST00000539869.2_1_6:166075455-166075494:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.5714111328125	2	437.762581	873.510608	-0.097065	-4.2491E-05	-0.73252	-0.00032067	-0.82959	-0.00036316	437.76231019017735	49.399	0.49801	49.119	48.861	49.359	-0.27977					19	12	2	0	0	0	0.027866	1	4921	4921		12.959	0	1	86780			43163	16410	29818	29869	48646	48646					0.06879336750637322
LLINLPAP	8	Unmodified	_LLINLPAP_					0	0	0		ENST00000408011.7_1_18:24128932-24129277:-|nuORF	ENST00000408011.7_1_18:24128932-24129277:-|nuORF	ENST00000408011.7_1_18:24128932-24129277:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.7751770019531	2	425.773471	849.53239	-0.44034	-0.00018748	3.9742	0.0016921	3.5338	0.0015046	425.7750913073762	43.22	2.2821	43.081	42.737	45.019	-0.13929					150	64	5	0	0	0	1.0574	1	3999	3999		19.36	1.0356	1	18199000			43164	13758	29819	29870	48647	48647					0.10160464770842736
LLINLRSL	8	Unmodified	_LLINLRSL_					0	0	0		ENST00000487863.5_1_19:53056575-53056806:+|nuORF	ENST00000487863.5_1_19:53056575-53056806:+|nuORF	ENST00000487863.5_1_19:53056575-53056806:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.8082275390625	2	471.310752	940.606951	1.045	0.00049253	-0.80814	-0.00038089	0.23689	0.00011165	471.31005133925555	19.695	0.44581	19.495	19.305	19.751	-0.2001					16	8	3	0	0	0	0.027866	1	438	438		14.664	0	1	247880			43165	15377	29820	29871	48648	48648					0.13427227582224077
LLIPFAPLSL	10	Unmodified	_LLIPFAPLSL_					0	0	0			REV__ENST00000302386.9_1_17:7143934-7144000:-|nuORF	REV__ENST00000302386.9_1_17:7143934-7144000:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.30810546875	2	542.344261	1082.67397	-1.5873	-0.00086086	-2.478	-0.0013439	-4.0652	-0.0022048	542.342680826121	80.398	0.58913	80.247	80.091	80.68	-0.15168					18	13	2	0	0	0	0.03519	1	9964	9964		24.203	0	1	108690	+		43166	30075	29821	29872	48649	48649					0.1359383807332506
LLIPGLATA	9	Unmodified	_LLIPGLATA_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7791748046875	2	434.778754	867.542954	-0.29687	-0.00012907	0.044841	1.9496E-05	-0.25203	-0.00010958	434.7788927720626	83.245	1.4639	83.245	82.664	84.128	0					70	33	4	0	0	0	0.049708	3	10422	10396;10407;10422		128.82	23.547	1	1209400			43167	4099	29822	29873	48650;48651;48652	48652					0.10388447425282266
LLIPGLATA	9	Unmodified	_LLIPGLATA_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7788391113281	2	434.778754	867.542954	0.53037	0.00023059	-0.80602	-0.00035044	-0.27565	-0.00011985	434.77858193361936	83.329	1.5015	83.238	82.615	84.117	-0.090454					69	34	3	0	0	0	0.12366	2	10393	10381;10393		105.27	33.069	1	970740			43168	4099	29822	29873	48653;48654	48654					0.10388447425282266
LLIPGLATA	9	Unmodified	_LLIPGLATA_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7789306640625	2	434.778754	867.542954	-0.35401	-0.00015392	0.31228	0.00013577	-0.041728	-1.8143E-05	434.77894097922865	83.198	1.7169	83.224	82.617	84.334	0.02655					67	39	3	0	0	0	0.12366	3	10315	10315;10326;10340		105.27	42.29	1	1356900			43169	4099	29822	29873	48655;48656;48657	48655					0.10388447425282266
LLIPGLATA	9	Unmodified	_LLIPGLATA_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.77874755859375	2	434.778754	867.542954	0.70125	0.00030489	-0.79557	-0.00034589	-0.094313	-4.1005E-05	434.7784781646529	83.295	1.7169	83.084	82.356	84.073	-0.21159					90	39	4	0	0	0	0.12366	3	10030	10030;10042;10055		105.27	21.982	1	958200			43170	4099	29822	29873	48658;48659;48660	48658					0.10388447425282266
LLIPGLATA	9	Unmodified	_LLIPGLATA_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7788391113281	2	434.778754	867.542954	0.53528	0.00023273	-0.54274	-0.00023597	-0.0074608	-3.2438E-06	434.7785637256609	83.27	1.535	83.1	82.647	84.182	-0.16915					78	35	4	0	0	0	0.12366	4	10049	10037;10049;10062;10075		105.27	33.891	1	1196700			43171	4099	29822	29873	48661;48662;48663;48664	48662					0.10388447425282266
LLIPGLATA	9	Unmodified	_LLIPGLATA_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7787780761719	2	434.778754	867.542954	0.36886	0.00016037	-0.45401	-0.0001974	-0.085157	-3.7025E-05	434.77861666998047	83.241	1.6706	83.102	82.523	84.194	-0.1386					84	38	4	0	0	0	0.24299	3	10027	10016;10027;10053		83.287	24.505	1	1269500			43172	4099	29822	29873	48665;48666;48667	48666					0.10388447425282266
LLIPKSTLS	9	Unmodified	_LLIPKSTLS_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3083190917969	2	486.310418	970.606283	1.2607	0.0006131	-4.1275	-0.0020072	-2.8667	-0.0013941	486.30827018458734	17.438	0.24952	17.284	17.108	17.358	-0.15403					7	4	2	0	0	0	0.96322	1	188	188		27.882	4.8398	1	59403	+		43173	19982	29823	29874	48668	48668					0.11980388142535503
LLIPKSTLS	9	Unmodified	_LLIPKSTLS_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	486.310418	970.606283	1.2607	0.0006131	-4.1275	-0.0020072	-2.8667	-0.0013941	486.30827018458734	17.438	0.24952	17.284	17.108	17.358	-0.15403	0.031435	-0.00038791	NaN	27.882	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59403	+		43174	19982	29823	29874							0.11980388142535503
LLIPKSTLS	9	Unmodified	_LLIPKSTLS_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.310418	970.606283	-0.16709	-8.1259E-05	-2.5697	-0.0012497	-2.7368	-0.0013309	486.3088848863356	17.427	0.14969	17.221	17.116	17.265	-0.20669	-0.031435	0.0011272	NaN	27.882	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13736	+		43175	19982	29823	29874							0.11980388142535503
LLIPNMIRY	9	Unmodified	_LLIPNMIRY_					0	0	0		ENST00000261220.13_2_12:95889788-95889839:+|nuORF	ENST00000261220.13_2_12:95889788-95889839:+|nuORF	ENST00000261220.13_2_12:95889788-95889839:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.8287353515625	2	566.830995	1131.64744	0.35031	0.00019857	-3.9137	-0.0022184	-3.5634	-0.0020199	566.8286927487397	50.087	0.49052	49.906	49.681	50.172	-0.18071					20	12	2	0	0	0	0.024535	1	5095	5095		25.45	19.892	1	368380			43176	11462	29824	29875	48669	48669					0.08687825910351421
LLIPSCPGAL	10	Unmodified	_LLIPSCPGAL_					0	0	0		ENST00000532320.5_1_11:771189-774104:-|nuORF;ENSG00000177225|ENST00000319863|GATD1;nc|ENSG00000177225|Q8NB37-2|GATD1	ENST00000532320.5_1_11:771189-774104:-|nuORF	ENST00000532320.5_1_11:771189-774104:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.28515625	2	492.283346	982.552139	-0.36272	-0.00017856	4.4347	0.0021831	4.0719	0.0020045	492.28549420674483	93.237	1.1339	93.245	92.758	93.892	0.0077286					61	26	4	0	0	0	1.1267	1	11752	11752		29.15	1.2673	1	2546900			43177	8721	29825	29876	48670	48670					0.06016472719295507
LLIQCFHVV	9	Unmodified	_LLIQCFHVV_					0	0	0		ENSG00000206177|ENST00000356815|HBM	ENSG00000206177|ENST00000356815|HBM	ENSG00000206177|ENST00000356815|HBM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2897338867188	2	536.304613	1070.59467	-1.0007	-0.00053669	3.2746	0.0017562	2.2739	0.0012195	536.3061986703955	82.526	1.0621	82.552	81.94	83.002	0.025711					40	24	3	0	0	0	0.024517	1	10177	10177		26.796	0	1	637310			43178	10465	29826	29877	48671	48671					0.06219867847539717
LLIQEGGLLG	10	Unmodified	_LLIQEGGLLG_					0	0	0		ENST00000512100.5_1_4:8211452-8220050:+|nuORF	ENST00000512100.5_1_4:8211452-8220050:+|nuORF	ENST00000512100.5_1_4:8211452-8220050:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7635192871094	2	506.8055	1011.59645	-0.11218	-5.6852E-05	0.079258	4.0168E-05	-0.032919	-1.6684E-05	506.80505726665564	49.827	0.4071	49.547	49.359	49.766	-0.27977					22	10	3	0	0	0	0.03519	1	4999	4999		52.937	12.159	1	262910			43179	15850	29827	29878	48672	48672					0.09111200137158448
LLIQIPEEL	9	Unmodified	_LLIQIPEEL_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.3204345703125	2	534.320983	1066.62741	0.36698	0.00019608	-0.49774	-0.00026595	-0.13076	-6.9869E-05	534.3205505934575	96.273	0.62619	96.15	95.813	96.44	-0.12305					35	14	3	0	0	0	0.53979	1	11911	11911		56.721	12.604	1	736370			43180	18651	29828	29879	48673	48673					0.09676353451391151
LLIRTGSH	8	Unmodified	_LLIRTGSH_					0	0	0		ENSG00000112812|ENST00000230582|PRSS16;ENST00000485603.1_1_6:27222413-27223091:+|nuORF;ENST00000468138.5_1_6:27219498-27223091:+|nuORF;ENST00000495683.5_1_6:27218862-27223091:+|nuORF	ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2082214355469	2	448.769252	895.52395	-0.2625	-0.0001178	0.43672	0.00019599	0.17422	7.8186E-05	448.76925603031094	32.28	0.50175	32.28	32.03	32.531	0					25	12	3	0	0	0	0.027866	1	2217	2217		18.324	6.8134	1	243850			43181	3242	29829	29880	48674	48674					0.07200910854248832
LLISITSPCV	10	Unmodified	_LLISITSPCV_					0	0	0		ENST00000406438.4_1_17:18219347-18219446:+|nuORF	ENST00000406438.4_1_17:18219347-18219446:+|nuORF	ENST00000406438.4_1_17:18219347-18219446:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3042602539062	2	523.301736	1044.58892	0.35837	0.00018754	3.4114	0.0017852	3.7697	0.0019727	523.3034561801154	100.01	0.80638	99.881	99.471	100.28	-0.13364					42	23	2	0	0	0	1.1267	1	12422	12422		29.15	0	1	1402800			43182	13734	29830	29881	48675	48675					0.06840724545213561
LLISKIWEEY	10	Unmodified	_LLISKIWEEY_					0	0	0		ENST00000430210.1_1_1:227681388-227682478:-|nuORF	ENST00000430210.1_1_1:227681388-227682478:-|nuORF	ENST00000430210.1_1_1:227681388-227682478:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	646.3657836914062	2	647.358096	1292.70164	0.058829	3.8084E-05	-3.7352	-0.002418	-3.6764	-0.0023799	647.3554950293956	46.389	0.34573	46.128	45.854	46.2	-0.26118					21	8	3	0	0	0	0.03519	1	4458	4458		24.519	0	1	999280			43183	14161	29831	29882	48676	48676					0.06699696542909805
LLISLAAKV	9	Unmodified	_LLISLAAKV_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.787353515625	2	464.315503	926.616454	0.62731	0.00029127	-0.71374	-0.0003314	-0.086433	-4.0132E-05	464.31505626950724	70.865	0.79858	70.876	70.636	71.434	0.010735					29	19	3	0	0	0	0.023837	1	8493	8493		84.916	2.675	1	449860	+		43184	20580	29832	29883	48677	48677					0.15020995867757847
LLISLAAKV	9	Unmodified	_LLISLAAKV_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.315503	926.616454	0.20811	9.6629E-05	-0.48085	-0.00022327	-0.27274	-0.00012664	464.3153768556892	71.033	0.40051	70.761	70.614	71.015	-0.27185	-0.02264	0.00028477	NaN	84.916	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133020	+		43185	20580	29832	29883							0.15020995867757847
LLISLAAKV	9	Unmodified	_LLISLAAKV_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.315503	926.616454	-0.0076791	-3.5655E-06	0.24924	0.00011572	0.24156	0.00011216	464.3155013820996	70.974	0.43274	70.717	70.564	70.997	-0.25713	-0.06601	0.00096275	NaN	84.916	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175540	+		43186	20580	29832	29883							0.15020995867757847
LLITLIAVV	9	Unmodified	_LLITLIAVV_					0	0	0		ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.83404541015625	2	477.833529	953.652505	1.2397	0.00059239	-0.82252	-0.00039303	0.41722	0.00019936	477.83300080283107	105.72	1.0572	105.72	105.41	106.46	0					78	37	4	0	0	0	1.0365	1	13601	13601		12.959	4.1369	1	749940			43187	9782	29833	29884	48678	48678					0.1738245304461543
LLITMIICV	9	Unmodified	_LLITMIICV_					0	0	0			REV__ENST00000441380.1_1_6:29718508-29718580:-|nuORF	REV__ENST00000441380.1_1_6:29718508-29718580:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8038330078125	2	509.805599	1017.59665	-0.17148	-8.7423E-05	-3.589	-0.0018297	-3.7605	-0.0019171	509.80368236575634	98.113	1.9328	98.113	97.771	99.704	0					58	44	2	0	0	0	0.78069	1	12525	12525		40.573	7.7602	1	902990	+		43188	32543	29834	29885	48679	48679					0.08855160541122586
LLITRKTSTT	10	Unmodified	_LLITRKTSTT_					0	0	0		ENST00000427836.7_2_2:208866461-208866548:-|nuORF	ENST00000427836.7_2_2:208866461-208866548:-|nuORF	ENST00000427836.7_2_2:208866461-208866548:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	567.348063	1132.68157	-1.2023	-0.00068214	2.509	0.0014235	1.3067	0.00074137	567.3496650132539	91.06	0.36723	90.912	90.772	91.14	-0.1487					13	8	2	0	0	0	0.03519	1	11173	11173		32.812	7.2384	1	117590			43189	14121	29835	29886	48680	48680					0.12053945602929161
LLITRKTSTT	10	Unmodified	_LLITRKTSTT_					0	0	0		ENST00000427836.7_2_2:208866461-208866548:-|nuORF	ENST00000427836.7_2_2:208866461-208866548:-|nuORF	ENST00000427836.7_2_2:208866461-208866548:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3298950195312	2	567.348063	1132.68157	0.18955	0.00010754	3.0178	0.0017122	3.2074	0.0018197	567.3492014376195	91.565	0.77699	91.426	91.147	91.924	-0.13941					25	17	2	0	0	0	0.03519	1	11268	11268		40.778	32.547	1	58411			43190	14121	29835	29886	48681	48681					0.12053945602929161
LLIVGACY	8	Unmodified	_LLIVGACY_					0	0	0			REV__ENST00000561871.1_2_15:42565754-42565823:+|nuORF	REV__ENST00000561871.1_2_15:42565754-42565823:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2380065917969	2	426.238407	850.462261	0.16145	6.8818E-05	0.26579	0.00011329	0.42725	0.00018211	426.2385205947043	58.082	0.26736	57.892	57.789	58.056	-0.19018					11	6	2	0	0	0	1.0241	1	6376	6376		33.493	6.6969	1	1880500	+		43191	35182	29836	29887	48682	48682					0.031048431107251417
LLIVKEGG	8	Unmodified	_LLIVKEGG_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-2|SLC17A9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.7617492675781	2	414.763104	827.511654	0.29023	0.00012038	-4.0537	-0.0016813	-3.7634	-0.0015609	414.7613841509049	87.889	2.3301	87.752	87.289	89.619	-0.13744					147	55	6	0	0	0	1.0472	1	10699	10699		29.842	1.5873	1	22642000	+		43192	21198	29837	29888	48683	48683					0.09099874391199592
LLIWLVGQ	8	Unmodified	_LLIWLVGQ_					0	0	0			REV__ENSG00000161031|ENST00000340880|PGLYRP2	REV__ENSG00000161031|ENST00000340880|PGLYRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.3026428222656	2	471.294571	940.574589	-0.59345	-0.00027969	0.66968	0.00031562	0.076225	3.5925E-05	471.29492708081364	67.458	0.47006	67.22	67.038	67.508	-0.23814					14	10	2	0	0	0	0.027866	1	7795	7795		8.8223	0.59103	1	43908	+		43193	25371	29838	29889	48684	48684					0.10192440179241657
LLIYCNHIP	9	Unmodified	_LLIYCNHIP_					0	0	0		ENST00000346329.7_1_11:70281328-70281493:+|nuORF	ENST00000346329.7_1_11:70281328-70281493:+|nuORF	ENST00000346329.7_1_11:70281328-70281493:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.300537109375	2	543.294245	1084.57394	-0.23299	-0.00012658	1.485	0.00080681	1.252	0.00068023	543.2945910673651	74.626	1.6074	74.363	74.098	75.705	-0.26325					86	38	3	0	0	0	0.023954	1	8805	8805		42.474	0	1	973230			43194	12567	29839	29890	48685	48685					0.0350327746784842
LLIYSFCIY	9	Unmodified	_LLIYSFCIY_					0	0	0		ENST00000474795.5_1_3:62280441-62302825:-|nuORF	ENST00000474795.5_1_3:62280441-62302825:-|nuORF	ENST00000474795.5_1_3:62280441-62302825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.828857421875	2	567.798829	1133.5831	0.19111	0.00010851	-0.33532	-0.00019039	-0.14421	-8.1882E-05	567.798390549503	50.161	0.34563	50.055	49.856	50.202	-0.10558					14	8	2	0	0	0	0.024354	1	5072	5072		57.811	27.97	1	175290			43195	15041	29840	29891	48686	48686					0.021656260335475963
LLKAAEQAGF	10	Unmodified	_LLKAAEQAGF_					0	0	0		ENST00000317594.6_1_11:117693022-117695420:-|nuORF	ENST00000317594.6_1_11:117693022-117695420:-|nuORF	ENST00000317594.6_1_11:117693022-117695420:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3034057617188	2	524.295299	1046.57605	-0.92594	-0.00048547	0.87204	0.00045721	-0.053897	-2.8258E-05	524.2949785553783	89.587	0.34383	89.424	89.215	89.558	-0.1626					9	7	2	0	0	0	0.03519	1	10947	10947		40.778	25.913	1	34181			43196	12165	29841	29892	48687	48687					0.054620294773030764
LLKAATVSPL	10	Unmodified	_LLKAATVSPL_					0	0	0			REV__SPEN|p.S2481L|1|0.22|ENSG00000065526|chr1:15933682-15933682|C/T|missense_variant	REV__SPEN|p.S2481L|1|0.22|ENSG00000065526|chr1:15933682-15933682|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8272399902344	2	506.823692	1011.63283	5.2876	0.0026799	3.3243	0.0016848	8.6119	0.0043647	506.8252498667382	17.446	0.37442	17.506	17.379	17.754	0.06036					24	11	3	0	0	0	1.089	1	134	134		34.173	7.4796	1	110720	+		43197	37574	29842	29893	48688	48688					0.1274807703384795
LLKATCGMKV	10	Unmodified	_LLKATCGMKV_					0	0	0		ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant;ANKRD30A|p.F1133Lfs*7|1|0.19|ENSG00000148513|chr10:37219109-37219109|T/-|frameshift_variant;ENSG00000148513|ENST00000361713|ANKRD30A	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.301025390625	2	532.303755	1062.59296	-0.86461	-0.00046023	3.3568	0.0017868	2.4922	0.0013266	532.3054123417063	60.938	1.3181	60.938	60.401	61.72	0					57	34	2	0	0	0	0.03519	1	7029	7029		40.778	3.6191	1	3521800			43198	93	29843	29894	48689	48689					0.06416490767264804
LLKATSALGFV	11	Unmodified	_LLKATSALGFV_					0	0	0			REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.340087890625	2	560.342249	1118.66995	0.39378	0.00022065	-4.1525	-0.0023268	-3.7587	-0.0021062	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	0.98904	1	12592	12592		39.253	0	1	14365000	+		43199	29010	29844	29895	48690	48690					0.11535748579581195
LLKAVTPKHI	10	Unmodified	_LLKAVTPKHI_					0	0	0		ENST00000578036.5_1_17:62801160-62825332:-|nuORF;ENST00000584585.1_1_17:62817020-62825332:-|nuORF;ENST00000580919.5_1_17:62811233-62825332:-|nuORF;ENST00000397718.8_1_17:62816508-62825332:-|nuORF	ENST00000578036.5_1_17:62801160-62825332:-|nuORF	ENST00000578036.5_1_17:62801160-62825332:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3397827148438	2	560.366059	1118.71756	0.39943	0.00022383	0.89645	0.00050234	1.2959	0.00072617	560.3663683850838	101.2	0.17541	101.08	100.94	101.11	-0.12576					6	3	2	0	0	0	0.03519	1	12563	12563		25.574	6.2141	1	60580			43200	13600	29845	29896	48691	48691					0.1629544757045096
LLKCAPRG	8	Unmodified	_LLKCAPRG_					0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.262451171875	2	429.254923	856.495293	-0.26328	-0.00011301	-3.8466	-0.0016512	-4.1098	-0.0017642	429.2532997477459	90.226	0.19829	90.101	90.01	90.208	-0.12512					6	4	2	0	0	0	0.027866	1	11037	11037		28.254	5.2176	1	71799			43201	5530	29846	29897	48692	48692					0.06130469953438933
LLKDEAVPVT	10	Unmodified	_LLKDEAVPVT_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2896118164062	2	542.816064	1083.61758	-0.45998	-0.00024968	-0.67005	-0.00036371	-1.13	-0.0006134	542.8162112435459	104.35	0.89355	104.35	104.03	104.92	0					29	23	2	0	0	0	0.03519	1	13414	13414		49.442	10.189	1	92073	+		43202	24158	29847	29898	48693	48693					0.07911165445989354
LLKDEAVPVT	10	Unmodified	_LLKDEAVPVT_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.816064	1083.61758	-0.60092	-0.00032619	-0.60538	-0.00032861	-1.2063	-0.0006548	542.8165148179849	104.35	0.78221	104.36	104.15	104.93	0.0031357	-0.021656	-4.0345E-05	NaN	64.207	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83322	+		43203	24158	29847	29898							0.07911165445989354
LLKDEAVPVT	10	Unmodified	_LLKDEAVPVT_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.816064	1083.61758	-0.58233	-0.0003161	-0.46183	-0.00025069	-1.0442	-0.00056679	542.8162368189638	104.43	0.92349	104.43	104.03	104.95	-0.0032196	0.046685	0.00011549	NaN	64.207	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90220	+		43204	24158	29847	29898							0.07911165445989354
LLKDRVEKA	9	Unmodified	_LLKDRVEKA_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.29296875	2	536.329673	1070.64479	-1.1764	-0.00063093	-1.5261	-0.00081849	-2.7025	-0.0014494	536.3287893395143	44.596	0.76245	44.596	44.451	45.214	0					25	21	2	0	0	0	0.024466	1	4249	4249		39.253	10.083	1	115760	+		43205	27155	29848	29899	48694	48694					0.11229693777045213
LLKEAYGDE	9	Unmodified	_LLKEAYGDE_					0	0	0		ENSG00000179240|ENST00000529331|GVQW3;ENST00000531785.1_1_11:76092857-76106035:+|nuORF;nc|ENSG00000179240|Q3ZCU0-2|GVQW3;nc|ENSG00000179240|Q3ZCU0|GVQW3	ENSG00000179240|ENST00000529331|GVQW3	ENSG00000179240|ENST00000529331|GVQW3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8252563476562	2	519.261122	1036.50769	-1.1317	-0.00058767	2.3024	0.0011955	1.1707	0.00060788	519.2625036717732	81.034	0.88281	81.058	80.775	81.658	0.023911					59	21	4	0	0	0	0.024292	1	10048	10048		68.787	13.283	1	753140			43206	8882	29849	29900	48695	48695					-0.00910259893203147
LLKEDETWMWQ	11	Oxidation (M)	_LLKEDETWM(Oxidation (M))WQ_		LLKEDETWM(1)WQ		LLKEDETWM(70)WQ	0	0	1			REV__ENSG00000127329|ENST00000334414|PTPRB	REV__ENSG00000127329|ENST00000334414|PTPRB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.9018859863281	3	498.902632	1493.68607	-0.72454	-0.00036148	-1.5611	-0.00077886	-2.2857	-0.0011403	498.90222051567366	43.712	1.7815	43.712	43.332	45.114	0					155	50	7	0	0	0	0.59134	1	4099	4099		70.399	39.33	1	51450000	+		43207	22927	29850	29901	48696	48696		684			-0.041029580364693174
LLKEETCLD	9	Unmodified	_LLKEETCLD_					0	0	0		ENSG00000159527|ENST00000683862|PGLYRP3	ENSG00000159527|ENST00000683862|PGLYRP3	ENSG00000159527|ENST00000683862|PGLYRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2551879882812	2	532.270632	1062.52671	-0.91337	-0.00048616	1.4832	0.00078946	0.56982	0.0003033	532.2714691338751	52.857	0.68769	52.857	52.472	53.16	0					24	17	2	0	0	0	0.024354	1	5667	5667		38.806	3.1879	1	259820			43208	6752	29851	29902	48697	48697					-0.002050465937827539
LLKEFFEV	8	Unmodified	_LLKEFFEV_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.7869873046875	2	512.789318	1023.56408	0.11255	5.7714E-05	-4.0582	-0.002081	-3.9457	-0.0020233	512.7870957707205	66.167	0.41662	66.167	65.913	66.33	0					25	11	3	0	0	0	0.99042	1	7875	7875		38.806	6.8513	1	2519100	+		43209	27297	29852	29903	48698	48698					0.05324412734148609
LLKEISRKRR	10	Unmodified	_LLKEISRKRR_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.25531005859375	3	433.617489	1297.83064	0.086997	3.7723E-05	2.8818	0.0012496	2.9688	0.0012873	433.61804491741543	102.74	0.34344	102.75	102.59	102.93	0.0054169					8	8	2	0	0	0	0.03519	1	13112	13112		16.007	2.4988	1	42110			43210	6354	29853	29904	48699	48699					0.19363516016346694
LLKEKNVEI	9	Unmodified	_LLKEKNVEI_					0	0	0		ANKRD30A|p.E1371V|1|0.28|ENSG00000148513|chr10:37219824-37219824|A/T|missense_variant	ANKRD30A|p.E1371V|1|0.28|ENSG00000148513|chr10:37219824-37219824|A/T|missense_variant	ANKRD30A|p.E1371V|1|0.28|ENSG00000148513|chr10:37219824-37219824|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.8104858398438	2	543.331882	1084.64921	-1.231	-0.00066884	0.1775	9.6444E-05	-1.0535	-0.00057239	543.3317607726199	63.099	0.29296	62.859	62.654	62.947	-0.23926					9	6	2	0	0	0	0.022587	1	7334	7334		96.19	34.083	1	127740			43211	92	29854	29905	48700	48700					0.11027158199954101
LLKELCTD	8	Unmodified	_LLKELCTD_					0	0	0			REV__ENSG00000106009|ENST00000340611|BRAT1	REV__ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.76885986328125	2	467.749336	933.484119	0.42279	0.00019776	-0.48304	-0.00022594	-0.060245	-2.8179E-05	467.7490043582256	74.27	1.625	74.011	73.589	75.214	-0.25887					64	39	2	0	0	0	0.027866	1	9051	9051		53.351	32.87	1	320510	+		43212	21588	29855	29906	48701	48701					0.014716030686486192
LLKELEQKDF	10	Unmodified	_LLKELEQKDF_					0	0	0		ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	ENSG00000053328|ENST00000338882|METTL24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.7508239746094	3	421.571211	1261.6918	-0.031126	-1.3122E-05	-1.618	-0.00068211	-1.6491	-0.00069523	421.570454638869	41.658	0.58548	41.531	41.263	41.849	-0.12681					29	15	3	0	0	0	0.03519	1	3746	3746		38.754	10.672	1	266470			43213	1158	29856	29907	48702	48702					0.07142508537504
LLKELLPVI	9	Unmodified	_LLKELLPVI_					0	0	0		nc|ENSG00000100084|P54198-2|HIRA;ENSG00000100084|ENST00000263208|HIRA	nc|ENSG00000100084|P54198-2|HIRA	nc|ENSG00000100084|P54198-2|HIRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8223876953125	2	519.352086	1036.68962	-0.94923	-0.00049298	-1.0468	-0.00054364	-1.996	-0.0010366	519.3524657162552	81.303	2.9348	81.327	81.007	83.942	0.023911					213	69	5	0	0	0	0.023007	1	10214	10214		87.754	21.325	1	22676000			43214	2129	29857	29908	48703	48703					0.1727412459038078
LLKEMIIQV	9	Oxidation (M)	_LLKEM(Oxidation (M))IIQV_		LLKEM(1)IIQV		LLKEM(110)IIQV	0	0	1			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8289184570312	2	551.83066	1101.64677	-0.43905	-0.00024228	-2.0573	-0.0011353	-2.4964	-0.0013776	551.8293845140449	102.8	2.3433	102.8	102.5	104.84	0.0054245					140	61	4	0	0	0	0.091713	1	13174	13174		113.41	31.107	1	4472800	+		43215	36781	29858	29909	48704	48704		975			0.10000986470618045
LLKEMIIQV	9	Oxidation (M)	_LLKEM(Oxidation (M))IIQV_		LLKEM(1)IIQV		LLKEM(130)IIQV	0	0	1			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.8279418945312	2	551.83066	1101.64677	-0.057858	-3.1928E-05	-2.4396	-0.0013463	-2.4975	-0.0013782	551.8291985704104	102.86	2.5227	102.86	102.59	105.12	-0.0046005					140	66	4	0	0	0	0.043667	3	13115	13104;13115;13127		131.03	15.572	1	4991000	+		43216	36781	29858	29909	48705;48706;48707	48706		975			0.10000986470618045
LLKEMIIQV	9	Oxidation (M)	_LLKEM(Oxidation (M))IIQV_		LLKEM(1)IIQV		LLKEM(130)IIQV	0	0	1			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.8291625976562	2	551.83066	1101.64677	-0.10765	-5.9407E-05	-2.6164	-0.0014438	-2.7241	-0.0015032	551.8291137740849	102.82	1.7524	102.69	102.36	104.12	-0.12783					96	43	3	0	0	0	0.057894	2	12779	12770;12779		125.81	14.13	1	3679100	+		43217	36781	29858	29909	48708;48709	48709		975			0.10000986470618045
LLKEMIIQV	9	Oxidation (M)	_LLKEM(Oxidation (M))IIQV_		LLKEM(1)IIQV		LLKEM(100)IIQV	0	0	1			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.8289184570312	2	551.83066	1101.64677	0.1778	9.8113E-05	-2.7168	-0.0014992	-2.539	-0.0014011	551.8290436959719	102.87	1.6249	102.7	102.42	104.05	-0.17034					87	39	3	0	0	0	0.14024	1	12756	12756		101.6	13.846	1	2934300	+		43218	36781	29858	29909	48710	48710		975			0.10000986470618045
LLKEPDKAF	9	Unmodified	_LLKEPDKAF_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2787475585938	2	530.8055	1059.59645	-0.80642	-0.00042805	-1.3548	-0.00071914	-2.1612	-0.0011472	530.8038670407933	69.064	0.56255	69.064	68.861	69.423	0					17	14	2	0	0	0	0.024466	1	8362	8362		33.516	11.556	1	157490			43219	10726	29859	29910	48711	48711					0.06903200137116983
LLKEPRDLIA	10	Unmodified	_LLKEPRDLIA_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.3561401367188	2	584.358431	1166.70231	-1.5035	-0.00087856	-2.2448	-0.0013117	-3.7482	-0.0021903	584.3569906340243	90.918	2.9096	90.763	89.904	92.814	-0.1552					184	69	3	0	0	0	1.1217	1	11156	11156		21.96	0	1	681520	+		43220	27888	29860	29911	48712	48712					0.1256253598260173
LLKEQQDLL	9	Unmodified	_LLKEQQDLL_					0	0	0			REV__ENSG00000157637|ENST00000374759|SLC38A10	REV__ENSG00000157637|ENST00000374759|SLC38A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3370361328125	2	550.321514	1098.62847	-0.30356	-0.00016706	-0.11965	-6.5846E-05	-0.42321	-0.0002329	550.3214647681405	68.329	0.4183	68.329	68.064	68.482	0					15	10	2	0	0	0	0.024344	1	8170	8170		45.972	8.1607	1	140590	+		43221	25142	29861	29912	48713	48713					0.08310567820285542
LLKEVPLI	8	Unmodified	_LLKEVPLI_					0	0	0			REV__ENST00000521713.1_1_7:6183795-6185153:+|nuORF	REV__ENST00000521713.1_1_7:6183795-6185153:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.8104553222656	2	462.810054	923.605554	-0.3122	-0.00014449	0.42243	0.00019551	0.11023	5.1015E-05	462.81004978397175	68.85	0.64124	68.85	68.56	69.202	0					40	16	3	0	0	0	0.42327	1	8276	8276		94.006	10.719	1	1637300	+		43222	34323	29862	29913	48714	48714					0.14069593493468346
LLKFAFSIRA	10	Unmodified	_LLKFAFSIRA_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	584.3300170898438	2	583.358234	1164.70191	0.041264	2.4071E-05	-3.5128	-0.0020492	-3.4716	-0.0020252	583.3561323739575	59.695	0.47924	59.781	59.501	59.98	0.085682					20	12	2	0	0	0	0.03519	1	6750	6750		18.262	0	1	155560			43223	2418	29863	29914	48715	48715					0.12615161053417978
LLKFWTCY	8	Unmodified	_LLKFWTCY_					0	0	0		ENSG00000260286|ENST00000565469|ARMH2	ENSG00000260286|ENST00000565469|ARMH2	ENSG00000260286|ENST00000565469|ARMH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.2789306640625	2	537.278063	1072.54157	-0.51764	-0.00027812	1.6035	0.0008615	1.0858	0.00058338	537.2787287221751	24.668	0.56864	24.493	24.252	24.821	-0.17484					29	12	4	0	0	0	0.97924	1	1109	1109		40.573	1.3198	1	771000			43224	10941	29864	29915	48716	48716					0.008204900648479452
LLKGCSLFL	9	Carbamidomethyl (C)	_LLKGC(Carbamidomethyl (C))SLFL_	LLKGC(1)SLFL		LLKGC(94)SLFL		0	1	0		ENST00000514949.1_1_5:122111158-122111338:+|nuORF	ENST00000514949.1_1_5:122111158-122111338:+|nuORF	ENST00000514949.1_1_5:122111158-122111338:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.802734375	2	525.804445	1049.59434	-0.34685	-0.00018237	-3.4756	-0.0018275	-3.8224	-0.0020099	525.8027046355868	101.64	1.3777	101.65	101.25	102.63	0.0090332					77	31	5	0	0	0	0.17455	1	13009	13009		94.006	9.0909	1	2034600			43225	15888	29865	29916	48717	48717	212				0.07152448127658317
LLKGIVGF	8	Unmodified	_LLKGIVGF_					0	0	0		ENSG00000112175|ENST00000370830|BMP5;nc|ENSG00000112175|P22003-2|BMP5	ENSG00000112175|ENST00000370830|BMP5	ENSG00000112175|ENST00000370830|BMP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.72698974609375	2	423.776014	845.537475	-0.66327	-0.00028108	-4.4754	-0.0018966	-5.1387	-0.0021777	423.77337051625676	34.462	0.14414	34.462	34.408	34.552	0					6	3	2	0	0	0	0.027866	1	2585	2585		14.664	0	1	45388			43226	3179	29866	29917	48718	48718					0.10852768633469623
LLKGIYAINFN	11	Unmodified	_LLKGIYAINFN_					0	0	0		ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3735961914062	2	633.366256	1264.71796	1.1238	0.00071176	3.4519	0.0021863	4.5757	0.0028981	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.018	1	12395	12395		32.812	2.4947	1	8250400			43227	3214	29867	29918	48719	48719					0.0961882249964674
LLKGNGPI	8	Unmodified	_LLKGNGPI_					0	0	0			REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2188720703125	2	406.255446	810.496338	0.41835	0.00016996	3.1648	0.0012857	3.5832	0.0014557	406.25658890175214	46.614	1.3515	46.518	45.999	47.35	-0.096649					66	36	3	0	0	0	0.027866	1	4448	4448		7.6903	0	1	740430	+		43228	22003	29868	29919	48720	48720					0.08351007594001203
LLKGSVHL	8	Unmodified	_LLKGSVHL_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.7766418457031	2	433.776545	865.538538	-0.6263	-0.00027168	0.91241	0.00039578	0.2861	0.00012411	433.7767719489303	29.569	0.97945	29.323	29.011	29.99	-0.24524					58	22	4	0	0	0	0.65272	1	1812	1812		71.378	0.082209	1	1530800	+		43229	21301	29869	29920	48721	48721					0.10038983002368695
LLKHEKLK	8	Unmodified	_LLKHEKLK_					0	0	0		RBM28|p.Q475E|1|0.12|ENSG00000106344|chr7:128321406-128321406|G/C|missense_variant	RBM28|p.Q475E|1|0.12|ENSG00000106344|chr7:128321406-128321406|G/C|missense_variant	RBM28|p.Q475E|1|0.12|ENSG00000106344|chr7:128321406-128321406|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.78948974609375	2	504.831852	1007.64915	-0.58156	-0.00029359	-0.10165	-5.1314E-05	-0.68321	-0.0003449	504.83174985012766	35.335	0.35112	35.122	34.963	35.314	-0.21246					12	8	2	0	0	0	0.027866	1	2653	2653		90.777	5.4172	1	90312			43230	19036	29870	29921	48722	48722					0.14563202990598256
LLKHEQTLET	10	Unmodified	_LLKHEQTLET_					0	0	0		ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5111083984375	3	404.559194	1210.65575	-0.50972	-0.00020621	4.3393	0.0017555	3.8295	0.0015493	404.5606394915293	32.303	0.3366	32.145	31.948	32.284	-0.15772					14	7	3	0	0	0	0.03519	1	2182	2182		37.508	5.9784	1	96868			43231	2398	29871	29922	48723	48723					0.0588505136065578
LLKHKKESW	9	Unmodified	_LLKHKKESW_					0	0	0		ENST00000261254.7_1_12:4412413-4412500:+|nuORF	ENST00000261254.7_1_12:4412413-4412500:+|nuORF	ENST00000261254.7_1_12:4412413-4412500:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.7547607421875	2	584.84549	1167.67643	-0.39811	-0.00023283	0.21285	0.00012449	-0.18525	-0.00010834	584.8452522809068	70.088	0.36797	69.866	69.68	70.048	-0.22246					12	8	2	0	0	0	0.024506	1	8167	8167		30.504	4.9296	1	74288			43232	11465	29872	29923	48724	48724					0.09929686530995241
LLKHKKESW	9	Unmodified	_LLKHKKESW_					0	0	0		ENST00000261254.7_1_12:4412413-4412500:+|nuORF	ENST00000261254.7_1_12:4412413-4412500:+|nuORF	ENST00000261254.7_1_12:4412413-4412500:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	584.84549	1167.67643	-0.77649	-0.00045413	-0.46405	-0.00027139	-1.2405	-0.00072552	584.845713999371	70.13	0.33218	69.879	69.691	70.023	-0.25063	0.0066739	-0.0004922	NaN	30.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63918			43233	11465	29872	29923							0.09929686530995241
LLKIFQEEN	9	Unmodified	_LLKIFQEEN_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MSMS	OPSCC_39_ClassI_Rep-2	2	567.3130493164062	2	567.313689	1132.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.602	1	61.376	60.876	61.876	-0.22663								0	0	0	0.071952	1	7104	7104		99.375	6.1795	1				43234	5185	29873	29924	48725	48725					0.05182281303223135
LLKIHAGP	8	Unmodified	_LLKIHAGP_					0	0	0		ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.23858642578125	2	424.771263	847.527973	0.15235	6.4715E-05	-0.016648	-7.0717E-06	0.13571	5.7644E-05	424.77116928275115	29.526	0.58068	29.376	29.087	29.668	-0.14952					26	13	3	0	0	0	0.027866	1	1812	1812		15.636	6.1657	1	163660			43235	11161	29874	29925	48726	48726					0.09811000347929166
LLKIKESL	8	Unmodified	_LLKIKESL_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.3128356933594	2	472.312961	942.611368	-0.65365	-0.00030873	-0.03528	-1.6663E-05	-0.68893	-0.00032539	472.3128665108423	44.907	0.94538	44.808	44.513	45.458	-0.099445					65	25	4	0	0	0	0.32162	1	4216	4216		108.09	1.6723	1	6715900			43236	1504	29875	29926	48727	48727					0.13776692005137647
LLKIKESL	8	Unmodified	_LLKIKESL_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.31243896484375	2	472.312961	942.611368	-0.72458	-0.00034223	0.016076	7.5931E-06	-0.70851	-0.00033464	472.3128743993293	45.024	0.82772	44.813	44.554	45.382	-0.21109					55	22	4	0	0	0	0.25873	1	4222	4222		129.68	5.0884	1	6372400			43237	1504	29875	29926	48728	48728					0.13776692005137647
LLKIKSAHKLL	11	Unmodified	_LLKIKSAHKLL_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	632.9308471679688	2	632.42919	1262.84383	1.3725	0.00086802	0.11583	7.3255E-05	1.4883	0.00094127	632.4288029042639	107.71	0.34282	107.71	107.57	107.91	0					33	17	3	0	0	0	1.0651	1	13836	13836		20.947	6.0821	1	2468000			43238	3450	29876	29927	48729	48729					0.2229195407574025
LLKIKSAHKLL	11	Unmodified	_LLKIKSAHKLL_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	633.4244384765625	2	632.42919	1262.84383	0.7621	0.00048198	-1.4878	-0.00094095	-0.72573	-0.00045897	632.4280759973636	107.69	0.27964	107.69	107.54	107.82	-0.0056458					20	13	2	0	0	0	0.024812	1	13770	13770		10.265	7.5468	1	2638700			43239	3450	29876	29927	48730	48730					0.2229195407574025
LLKIKSAHKLL	11	Unmodified	_LLKIKSAHKLL_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	632.42919	1262.84383	-0.17887	-0.00011313	1.7265	0.0010919	1.5477	0.00097878	632.4300558458323	107.73	0.27046	107.74	107.61	107.88	0.0033951	0.077986	0.0006894	NaN	10.265	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1409500			43240	3450	29876	29927							0.2229195407574025
LLKIKSAHKLL	11	Unmodified	_LLKIKSAHKLL_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	632.42919	1262.84383	-1.7409	-0.001101	2.788	0.0017632	1.0471	0.00066219	632.932342193424	107.7	0.095856	107.56	107.51	107.6	-0.1365	-0.096703	0.002032	NaN	10.265	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1326600			43241	3450	29876	29927							0.2229195407574025
LLKIKSCDV	9	Unmodified	_LLKIKSCDV_					0	0	0			REV__nc|ENSG00000116761|P32929-2|CTH	REV__nc|ENSG00000116761|P32929-2|CTH	MSMS	OPSCC_40_ClassI_Rep-3	6	509.80108642578125	2	509.801903	1017.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.256	1	88.119	87.619	88.619	-0.13744								0	0	0	0.14599	1	10744	10744		82.241	2.7895	1		+		43242	22302	29877	29928	48731	48731					0.08116144265056846
LLKINRHS	8	Unmodified	_LLKINRHS_					0	0	0			REV__ENSG00000049618|ENST00000636930|ARID1B	REV__ENSG00000049618|ENST00000636930|ARID1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.80328369140625	2	490.803626	979.592698	-0.63737	-0.00031282	-0.015559	-7.6362E-06	-0.65293	-0.00032046	490.8036342615088	35.494	1.1527	35.538	35.12	36.273	0.04406					106	30	6	0	0	0	0.81662	1	2686	2686		57.811	0	1	4559600	+		43243	20148	29878	29929	48732	48732					0.10208575153944821
LLKISPSTK	9	Unmodified	_LLKISPSTK_					0	0	0			REV__ENST00000560374.5_1_15:83654729-83654861:-|nuORF	REV__ENST00000560374.5_1_15:83654729-83654861:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.8153381347656	2	493.815867	985.617182	0.5731	0.00028301	-0.9635	-0.00047579	-0.3904	-0.00019279	493.8153233454757	20.901	1.0293	20.705	20.385	21.415	-0.19577					49	20	5	0	0	0	0.39228	1	610	610		66.429	0	1	1458100	+		43244	35145	29879	29930	48733	48733					0.12379790516797584
LLKIVPPV	8	Unmodified	_LLKIVPPV_					0	0	0			REV__ENST00000505189.5_3_4:159133255-159133342:+|nuORF	REV__ENST00000505189.5_3_4:159133255-159133342:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.2518615722656	2	439.807314	877.600075	-0.76123	-0.00033479	0.91968	0.00040448	0.15845	6.9686E-05	439.8076122483319	90.436	0.49919	90.311	90.088	90.587	-0.12512					20	11	2	0	0	0	0.027866	1	11058	11058		9.4706	0.64823	1	161530	+		43245	34004	29880	29931	48734	48734					0.156379147016537
LLKIVTGSL	9	Unmodified	_LLKIVTGSL_					0	0	0		ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.3125	2	472.312961	942.611368	-0.30105	-0.00014219	-0.32764	-0.00015475	-0.6287	-0.00029694	472.31270733512713	45.059	0.85072	44.806	44.508	45.359	-0.25252					63	22	5	0	0	0	0.19099	1	4218	4218		90.37	0	1	6277100			43246	10276	29881	29932	48735	48735					0.13776692005137647
LLKKDATKFS	10	Unmodified	_LLKKDATKFS_					0	0	0			REV__nc|ENSG00000197548|O95352-3|ATG7	REV__nc|ENSG00000197548|O95352-3|ATG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8433837890625	2	575.845156	1149.67576	0.025684	1.479E-05	-3.0728	-0.0017694	-3.0471	-0.0017547	575.8433115256851	102.77	0.5423	102.59	102.33	102.87	-0.17034					32	12	4	0	0	0	1.0616	1	12776	12776		37.812	6.1772	1	397440	+		43247	28315	29882	29933	48736	48736					0.10690847091291289
LLKKELLIHKN	11	Unmodified	_LLKKELLIHKN_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108355483-108366962:+|nuORF	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.26666259765625	3	450.294012	1347.86021	0.61245	0.00027578	3.4663	0.0015608	4.0787	0.0018366	450.2956211286229	54.065	0.55087	54.163	53.94	54.491	0.098015					22	15	2	0	0	0	0.024821	1	5801	5801		19.263	0.73163	1	148020			43248	10251	29883	29934	48737	48737					0.20019035241830352
LLKKFRQP	8	Unmodified	_LLKKFRQP_					0	0	0		ENSG00000171657|ENST00000302548|GPR82	ENSG00000171657|ENST00000302548|GPR82	ENSG00000171657|ENST00000302548|GPR82	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3132934570312	2	515.332019	1028.64948	-0.12047	-6.208E-05	-2.5208	-0.001299	-2.6413	-0.0013611	515.3311015892656	68.175	0.11917	68.194	68.118	68.237	0.018921					4	2	2	0	0	0	0.027866	1	8088	8088		26.796	1.3459	1	47131			43249	8179	29884	29935	48738	48738					0.1363062271045692
LLKKGYEVIY	10	Unmodified	_LLKKGYEVIY_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.2904052734375	2	613.363182	1224.71181	-1.2902	-0.00079135	-0.65394	-0.00040111	-1.9441	-0.0011925	613.3617359398922	60.792	0.23117	60.616	60.483	60.714	-0.1761					9	5	2	0	0	0	0.03519	1	6772	6772		79.451	8.1553	1	105650			43250	7589	29885	29936	48739	48739					0.10844304268152882
LLKKHEAL	8	Unmodified	_LLKKHEAL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.30267333984375	2	476.302927	950.591301	1.1381	0.00054209	-1.4119	-0.00067248	-0.27375	-0.00013039	476.30212147239376	22.969	0.50782	22.778	22.572	23.079	-0.19117					26	10	4	0	0	0	0.87148	1	840	840		53.351	9.2347	1	326340			43251	10033	29886	29937	48740	48740					0.11402941065182404
LLKKISDL	8	Unmodified	_LLKKISDL_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.L1333Ffs*8|1|0.23|ENSG00000124721|chr6:38842701-38842702|-/T|frameshift_variant;DNAH8|p.Y2004Tfs*18|1|0.37|ENSG00000124721|chr6:38866842-38866842|T/-|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.305136	928.595718	-0.29304	-0.00013636	-0.56136	-0.00026121	-0.85441	-0.00039756	465.3046648938945	75.589	0.37202	75.344	75.037	75.409	-0.24455					22	9	3	0	0	0	0.027866	1	9209	9209		42.474	6.8562	1	510230			43252	4071	29887	29938	48741	48741					0.1285640548809397
LLKKKPSLDD	10	Unmodified	_LLKKKPSLDD_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	578.8489379882812	2	578.850438	1155.68632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.163	1	19.002	18.502	19.502	-0.16079								0	0	0	0.75365	1	392	392		27.882	6.9353	1				43253	6044	29888	29939	48742	48742					0.11470829745690025
LLKKMRNMI	9	Unmodified	_LLKKMRNMI_					0	0	0			REV__ENSG00000108559|ENST00000573584|NUP88	REV__ENSG00000108559|ENST00000573584|NUP88	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.8306274414062	2	573.846122	1145.67769	-0.078655	-4.5136E-05	1.2749	0.00073162	1.1963	0.00068648	573.8467578123834	54.879	0.4525	54.728	54.442	54.894	-0.15036					24	12	3	0	0	0	0.024	1	5998	5998		55.504	0	1	255000	+		43254	21746	29889	29940	48743	48743					0.11067861303899917
LLKKVKTTT	9	Unmodified	_LLKKVKTTT_					0	0	0		ENST00000519124.5_1_8:124335233-124335293:-|nuORF	ENST00000519124.5_1_8:124335233-124335293:-|nuORF	ENST00000519124.5_1_8:124335233-124335293:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.3141479492188	2	516.344792	1030.67503	0.63668	0.00032874	3.2687	0.0016878	3.9054	0.0020165	516.3468139174206	98.079	0.33832	97.943	97.65	97.989	-0.13625					13	8	2	0	0	0	0.024541	1	12131	12131		15.642	9.7207	1	110620			43255	15944	29890	29941	48744	48744					0.1609205244221812
LLKLAATIYN	10	Unmodified	_LLKLAATIYN_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3404541015625	2	560.342249	1118.66995	-0.14841	-8.3159E-05	-3.8046	-0.0021319	-3.9531	-0.0022151	560.339968220762	101.14	1.958	101.14	100.73	102.69	0					150	44	6	0	0	0	1.0616	1	13018	13018		37.812	0.65241	1	14784000	+		43256	23873	29891	29942	48745	48745					0.11535748579603933
LLKLLVKPLT	10	Unmodified	_LLKLLVKPLT_					0	0	0			REV__ENSG00000186190|ENST00000375494|BPIFB3	REV__ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2835083007812	2	569.40211	1136.78967	-0.35859	-0.00020418	-0.12297	-7.0017E-05	-0.48156	-0.0002742	569.402036019764	81.313	0.20683	81.171	81.026	81.233	-0.14249					6	4	2	0	0	0	0.03519	1	9744	9744		14.865	4.5996	1	59814	+		43257	27833	29892	29943	48746	48746					0.22674361924168807
LLKLPNSF	8	Unmodified	_LLKLPNSF_					0	0	0			REV__ENST00000274457.4_1_5:114859130-114859301:-|nuORF	REV__ENST00000274457.4_1_5:114859130-114859301:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2919921875	2	466.284203	930.553853	-0.36801	-0.0001716	1.0785	0.0005029	0.71051	0.0003313	466.28441487192543	61.004	0.45723	60.791	60.567	61.024	-0.21339					19	11	2	0	0	0	0.027866	1	7031	7031		3.9852	0	1	103270	+		43258	29831	29893	29944	48747	48747					0.08579849799559724
LLKLQERVLNN	11	Unmodified	_LLKLQERVLNN_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.27374267578125	3	447.273388	1338.79833	-1.0771	-0.00048174	0.093236	4.1702E-05	-0.98383	-0.00044004	447.27335468333325	106.34	0.65143	106.2	105.92	106.58	-0.13279					81	28	4	0	0	0	1.0408	1	13232	13232		27.644	9.1129	1	1107000			43259	9990	29894	29945	48748	48748					0.14248683822711428
LLKLQERVLNN	11	Unmodified	_LLKLQERVLNN_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.2736511230469	3	447.273388	1338.79833	0.61872	0.00027674	-1.6294	-0.0007288	-1.0107	-0.00045206	447.2725425691253	106.39	0.89557	106.23	105.77	106.67	-0.16132					103	41	5	0	0	0	1.0764	1	13220	13220		17.833	0	1	1499900			43260	9990	29894	29945	48749	48749					0.14248683822711428
LLKLQERVLNN	11	Unmodified	_LLKLQERVLNN_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	447.273388	1338.79833	0.79111	0.00035384	-1.7113	-0.00076543	-0.92022	-0.00041159	447.27252393560246	106.17	0.60676	106.17	105.93	106.54	0	-0.02151	-0.00074076	NaN	27.644	88	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2219100			43261	9990	29894	29945							0.14248683822711428
LLKLRVSL	8	Unmodified	_LLKLRVSL_					0	0	0		ENST00000397954.6_1_15:25601962-25605532:-|nuORF	ENST00000397954.6_1_15:25601962-25605532:-|nuORF	ENST00000397954.6_1_15:25601962-25605532:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7878112792969	2	471.328945	940.643337	-0.32751	-0.00015436	-0.19688	-9.2797E-05	-0.52439	-0.00024716	471.32853175568005	23.639	0.46931	23.578	23.386	23.856	-0.060862					20	10	3	0	0	0	0.027866	1	961	961		3.41	0	1	84644			43262	13609	29895	29946	48750	48750					0.17064104478936315
LLKLVKPYV	9	Unmodified	_LLKLVKPYV_					0	0	0		ENSG00000265817|ENST00000481490|FSBP	ENSG00000265817|ENST00000481490|FSBP	ENSG00000265817|ENST00000481490|FSBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3056030273438	2	536.860078	1071.7056	-0.97544	-0.00052368	4.4346	0.0023808	3.4591	0.0018571	536.8627631097423	47.933	0.22221	47.78	47.702	47.924	-0.15301					9	6	2	0	0	0	0.024436	1	4814	4814		47.916	1.9636	1	276360			43263	10970	29896	29947	48751	48751					0.17261830827260383
LLKMKQQLQRN	11	Unmodified	_LLKMKQQLQRN_					0	0	0		ENST00000421745.6_1_2:32696141-32696189:+|nuORF	ENST00000421745.6_1_2:32696141-32696189:+|nuORF	ENST00000421745.6_1_2:32696141-32696189:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.60797119140625	3	467.278256	1398.81294	0.6313	0.00029499	-4.4888	-0.0020975	-3.8575	-0.0018025	467.27618999731317	100.88	0.38278	100.75	100.56	100.95	-0.13364					12	10	2	0	0	0	0.024801	1	12498	12498		23.378	10.945	1	147880			43264	13997	29897	29948	48752	48752					0.12948432699204204
LLKMLKLHLIL	11	Unmodified	_LLKMLKLHLIL_					0	0	0			REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF	REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.6358337402344	3	445.636721	1333.88834	0.21536	9.5974E-05	-1.8166	-0.00080954	-1.6012	-0.00071357	445.6358142382711	40.084	1.9182	40.084	39.733	41.652	0					203	53	5	0	0	0	1.1135	1	3527	3527		6.3209	0	1	6583600	+		43265	35456	29898	29949	48753	48753					0.2347464189758739
LLKMLKLHLIL	11	Unmodified	_LLKMLKLHLIL_					0	0	0			REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF	REV__ENST00000575041.5_1_16:11864830-11868126:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.6359558105469	3	445.636721	1333.88834	0.56368	0.00025119	-2.1189	-0.00094427	-1.5553	-0.00069308	445.6356673138534	40.339	2.0526	40.227	39.792	41.845	-0.11222					213	56	4	0	0	0	1.1045	1	3556	3556		10.104	1.3046	1	5905500	+		43266	35456	29898	29949	48754	48754					0.2347464189758739
LLKMWEDL	8	Unmodified	_LLKMWEDL_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3034057617188	2	524.280803	1046.54705	-0.94609	-0.00049602	-2.5204	-0.0013214	-3.4665	-0.0018174	524.2793328588941	89.628	0.60158	89.466	89.215	89.816	-0.1626					36	13	4	0	0	0	0.027866	1	10947	10947		12.959	0	1	228350			43267	6570	29899	29950	48755	48755					0.025641688566793164
LLKNHLSR	8	Unmodified	_LLKNHLSR_					0	0	0			REV__XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant	REV__XRCC4|p.Q203Lfs*23|1|0.1|ENSG00000152422|chr5:83203676-83203677|-/TGCTTAGCATTAACAT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.8034973144531	2	490.803626	979.592698	-0.69619	-0.00034169	0.21433	0.00010519	-0.48186	-0.0002365	490.8037124440314	35.574	0.96212	35.574	35.2	36.162	0					102	25	5	0	0	0	0.99042	1	2749	2749		38.806	1.647	1	4851900	+		43268	24838	29900	29951	48756	48756					0.10208575153944821
LLKNLTKYP	9	Unmodified	_LLKNLTKYP_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3345947265625	2	545.336967	1088.65938	-0.12412	-6.7689E-05	-3.3849	-0.0018459	-3.5091	-0.0019136	545.3350513773139	105.51	0.4071	105.51	105.32	105.73	0					22	9	3	0	0	0	0.92825	1	13549	13549		30.504	2.6214	1	219900			43269	6076	29901	29952	48757	48757					0.11859765925169086
LLKNLTKYP	9	Unmodified	_LLKNLTKYP_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	545.336967	1088.65938	-0.65491	-0.00035715	-2.7375	-0.0014929	-3.3924	-0.00185	545.3352622645874	105.61	0.37705	105.61	105.41	105.79	0.00014496	0.093398	0.00032514	NaN	30.504	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150070			43270	6076	29901	29952							0.11859765925169086
LLKNLTKYP	9	Unmodified	_LLKNLTKYP_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.336967	1088.65938	-0.17013	-9.278E-05	-3.2503	-0.0017725	-3.4204	-0.0018653	545.3350909575892	105.6	0.38959	105.48	105.28	105.67	-0.12444	-0.032785	-0.00023414	NaN	30.504	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133040			43271	6076	29901	29952							0.11859765925169086
LLKNLTKYP	9	Unmodified	_LLKNLTKYP_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.336967	1088.65938	-1.0367	-0.00056537	-2.477	-0.0013508	-3.5137	-0.0019162	545.3354888297479	105.65	0.26005	105.52	105.39	105.65	-0.13099	0.0034594	0.00060927	NaN	30.504	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93698			43272	6076	29901	29952							0.11859765925169086
LLKNLTKYP	9	Unmodified	_LLKNLTKYP_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENST00000587624.5_1_7:64601607-64646883:+|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.336967	1088.65938	-0.019709	-1.0748E-05	-2.8656	-0.0015627	-2.8853	-0.0015735	545.335389562085	105.66	0.3382	105.5	105.37	105.71	-0.16132	-0.015509	0.00018536	NaN	30.504	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85187			43273	6076	29901	29952							0.11859765925169086
LLKNVPTV	8	Unmodified	_LLKNVPTV_					0	0	0			REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.23077392578125	2	442.284203	882.553853	-0.17864	-7.9008E-05	1.5485	0.00068489	1.3699	0.00060588	442.2850019382926	46.713	0.89502	46.617	46.039	46.934	-0.096653					33	24	2	0	0	0	0.027866	1	4560	4560		23.042	0	1	330570	+		43274	37144	29902	29953	48758	48758					0.10787849799567084
LLKPEPRIAAM	11	Unmodified	_LLKPEPRIAAM_					0	0	0			REV__ENSG00000172985|ENST00000309415|SH3RF3	REV__ENSG00000172985|ENST00000309415|SH3RF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8695068359375	2	619.868108	1237.72166	-0.9051	-0.00056104	2.858	0.0017716	1.9529	0.0012106	619.869711333175	92.412	2.3777	92.412	91.051	93.429	0					189	56	4	0	0	0	1.0075	1	11729	11729		35.152	2.4015	1	1314500	+		43275	26728	29903	29954	48759	48759					0.11231169001871422
LLKPEPRIAAM	11	Unmodified	_LLKPEPRIAAM_					0	0	0			REV__ENSG00000172985|ENST00000309415|SH3RF3	REV__ENSG00000172985|ENST00000309415|SH3RF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8702392578125	2	619.868108	1237.72166	-0.66004	-0.00040914	2.7871	0.0017276	2.1271	0.0013185	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0718	1	11696	11696		19.104	0.84144	1	5229800	+		43276	26728	29903	29954	48760	48760					0.11231169001871422
LLKPFCAAL	9	Unmodified	_LLKPFCAAL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2859802246094	2	488.288431	974.562309	-0.27605	-0.00013479	-4.0262	-0.001966	-4.3023	-0.0021007	488.285363244478	106.43	0.71112	106.43	106.15	106.86	0.00015259					44	25	3	0	0	0	0.78069	1	13577	13577		40.573	8.6178	1	209240			43277	8540	29904	29955	48761	48761					0.07401080444515173
LLKPLNAIT	9	Unmodified	_LLKPLNAIT_					0	0	0		ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-6|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	ENSG00000083223|ENST00000375963|TUT7	ENSG00000083223|ENST00000375963|TUT7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.29241943359375	2	491.81841	981.622267	1.1101	0.00054596	-4.2337	-0.0020822	-3.1236	-0.0015362	491.8162382051132	22.878	0.51007	22.687	22.432	22.942	-0.19117					17	10	2	0	0	0	0.024541	1	835	835		5.9211	0	1	284080			43278	1748	29905	29956	48762	48762					0.13072094379401733
LLKPPLEQL	9	Unmodified	_LLKPPLEQL_					0	0	0		ENSG00000172315|ENST00000372114|TP53RK	ENSG00000172315|ENST00000372114|TP53RK	ENSG00000172315|ENST00000372114|TP53RK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.27685546875	2	525.831517	1049.64848	-0.71685	-0.00037694	-0.85931	-0.00045185	-1.5762	-0.00082879	525.8313264434521	94.289	0.73753	94.289	94.007	94.745	0					22	17	2	0	0	0	0.02435	1	12021	12021		60.972	2.19	1	71344			43279	8261	29906	29957	48763	48763					0.12564363550882263
LLKPPLLQGE	10	Unmodified	_LLKPPLLQGE_					0	0	0			REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.3455810546875	2	554.342249	1106.66995	0.35053	0.00019431	3.4744	0.001926	3.825	0.0021203	554.3440067571802	77.162	0.88404	76.894	76.595	77.479	-0.26806					53	21	4	0	0	0	0.52765	1	9185	9185		85.161	2.9203	1	2150100	+		43280	25868	29907	29958	48764	48764					0.12087748579619984
LLKPPLLQGE	10	Unmodified	_LLKPPLLQGE_					0	0	0			REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3450317382812	2	554.342249	1106.66995	0.59817	0.00033159	3.2458	0.0017993	3.844	0.0021309	554.3439177557184	77.11	1.1588	76.858	76.571	77.729	-0.25163					63	28	4	0	0	0	0.59716	1	9187	9187		77.318	5.4401	1	1912900	+		43281	25868	29907	29958	48765	48765					0.12087748579619984
LLKPPLLQGE	10	Unmodified	_LLKPPLLQGE_					0	0	0			REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.34423828125	2	554.342249	1106.66995	-0.49942	-0.00027685	4.229	0.0023443	3.7296	0.0020675	554.3444030162519	76.98	1.0387	76.811	76.482	77.52	-0.16854					50	24	4	0	0	0	0.42812	2	9146	9146;9159		95.815	18.498	1	2431300	+		43282	25868	29907	29958	48766;48767	48766					0.12087748579619984
LLKQLSLL	8	Unmodified	_LLKQLSLL_					0	0	0		ENST00000317012.4_1_3:111313738-111313888:-|nuORF	ENST00000317012.4_1_3:111313738-111313888:-|nuORF	ENST00000317012.4_1_3:111313738-111313888:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.31524658203125	2	464.315503	926.616454	-0.20678	-9.6013E-05	0.13566	6.2987E-05	-0.071129	-3.3026E-05	464.3154223350025	47.686	0.83657	47.589	47.349	48.186	-0.097553					56	22	3	0	0	0	0.39824	1	4682	4682		97.473	0	1	3038000			43283	12153	29908	29959	48768	48768					0.15020995867757847
LLKRAKVQ	8	Unmodified	_LLKRAKVQ_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3006591796875	2	478.324194	954.633835	-0.79395	-0.00037976	-1.1962	-0.00057218	-1.9902	-0.00095195	478.32379750043685	37.92	0.16671	37.92	37.803	37.969	0					6	4	2	0	0	0	0.027866	1	3127	3127		60.294	10.269	1	84546			43284	11013	29909	29960	48769	48769					0.15470336193413914
LLKREQGEVLL	11	Unmodified	_LLKREQGEVLL_					0	0	0			REV__ENSG00000103047|ENST00000261778|TANGO6	REV__ENSG00000103047|ENST00000261778|TANGO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.7449645996094	3	433.266122	1296.77654	-0.81012	-0.000351	0.34326	0.00014872	-0.46685	-0.00020227	433.26618233567285	28.392	1.0719	28.146	27.593	28.665	-0.24524					64	25	5	0	0	0	0.024723	1	1636	1636		35.178	14.863	1	2336600	+		43285	21350	29910	29961	48770	48770					0.1400187907415784
LLKREQGEVLL	11	Unmodified	_LLKREQGEVLL_					0	0	0			REV__ENSG00000103047|ENST00000261778|TANGO6	REV__ENSG00000103047|ENST00000261778|TANGO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.74481201171875	3	433.266122	1296.77654	-0.51066	-0.00022125	0.13654	5.9156E-05	-0.37413	-0.0001621	433.2660622272836	28.225	1.0721	28.056	27.569	28.641	-0.16897					67	25	4	0	0	0	0.02477	1	1618	1618		35.178	22.745	1	2008800	+		43286	21350	29910	29961	48771	48771					0.1400187907415784
LLKRKRFYLTK	11	Unmodified	_LLKRKRFYLTK_					0	0	0			REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF	REV__ENST00000391974.3_1_1:198190099-198190180:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.311279296875	3	489.317039	1464.92929	-0.094967	-4.6469E-05	3.0774	0.0015058	2.9825	0.0014594	489.3181748920911	17.629	0.59796	17.422	17.166	17.764	-0.20669					17	11	2	0	0	0	0.024876	1	209	209		13.508	7.5069	1	20434	+		43287	31591	29911	29962	48772	48772					0.2154211926140306
LLKRLNAN	8	Unmodified	_LLKRLNAN_					0	0	0			REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2755126953125	2	471.298176	940.581799	1.0661	0.00050246	-0.94518	-0.00044546	0.12094	5.6997E-05	471.29750517410275	20.814	0.34434	20.882	20.71	21.054	0.068901					11	6	2	0	0	0	0.027866	1	542	542		35.201	4.6971	1	24195	+		43288	30646	29912	29963	48773	48773					0.10913172779657998
LLKRLNAN	8	Unmodified	_LLKRLNAN_					0	0	0			REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.298176	940.581799	-0.57724	-0.00027205	0.12062	5.6846E-05	-0.45663	-0.00021521	471.29809154179475	20.854	0.38946	20.854	20.609	20.998	0	-0.030576	0.00022731	NaN	35.201	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12404	+		43289	30646	29912	29963							0.10913172779657998
LLKRLNAN	8	Unmodified	_LLKRLNAN_					0	0	0			REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.298176	940.581799	-0.050468	-2.3786E-05	0.0064345	3.0326E-06	-0.044034	-2.0753E-05	471.29805717279487	21.008	0.29306	20.917	20.766	21.059	-0.090094	0.032793	0.00011968	NaN	35.201	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15154	+		43290	30646	29912	29963							0.10913172779657998
LLKRPISR	8	Unmodified	_LLKRPISR_					0	0	0			REV__ENSG00000164691|ENST00000367066|TAGAP	REV__ENSG00000164691|ENST00000367066|TAGAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.82940673828125	2	491.829643	981.644734	-0.94863	-0.00046656	0.49347	0.0002427	-0.45515	-0.00022386	491.82977338378083	26.034	1.2943	25.871	25.414	26.708	-0.16331					95	34	4	0	0	0	0.95679	1	1243	1243		44.117	1.6423	1	5966800	+		43291	25792	29913	29964	48774	48774					0.1531773856770542
LLKRPQLEL	9	Unmodified	_LLKRPQLEL_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.3533325195312	2	555.355691	1108.69683	-0.12046	-6.6898E-05	-3.7617	-0.0020891	-3.8821	-0.002156	555.3534816537995	99.884	0.65701	99.713	99.316	99.974	-0.17088					48	18	4	0	0	0	0.78069	1	12354	12354		40.573	4.9543	1	851930			43292	2400	29914	29965	48775	48775					0.14682857190791765
LLKRSELP	8	Unmodified	_LLKRSELP_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.3006591796875	2	478.300384	954.586216	-0.60152	-0.00028771	-0.32955	-0.00015762	-0.93106	-0.00044533	478.30016845288947	37.854	1.6328	37.854	37.269	38.902	0					100	45	4	0	0	0	0.24207	5	3127	3091;3102;3114;3127;3139		133.47	18.01	1	16605000	+		43293	20160	29915	29966	48776;48777;48778;48779;48780	48779					0.10710637202555517
LLKRSELP	8	Unmodified	_LLKRSELP_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.30029296875	2	478.300384	954.586216	-0.77628	-0.00037129	-0.11055	-5.2875E-05	-0.88682	-0.00042417	478.3002911219348	37.77	1.786	37.688	37.144	38.93	-0.082516					105	49	4	0	0	0	0.24207	4	3064	3064;3074;3085;3124		133.47	30.696	1	15242000	+		43294	20160	29915	29966	48781;48782;48783;48784	48781					0.10710637202555517
LLKRSELP	8	Unmodified	_LLKRSELP_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3004455566406	2	478.300384	954.586216	-1.0606	-0.0005073	-0.16764	-8.0183E-05	-1.2283	-0.00058749	478.3002496219315	37.978	1.6944	38.005	37.372	39.067	0.027275					110	46	4	0	0	0	0.24207	2	3072	3072;3106		133.47	12.848	1	13748000	+		43295	20160	29915	29966	48785;48786	48785					0.10710637202555517
LLKRVVLLLFD	11	Unmodified	_LLKRVVLLLFD_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.25311279296875	3	443.626991	1327.85914	-0.33575	-0.00014895	-2.5494	-0.001131	-2.8851	-0.0012799	443.62653513339586	29.09	0.22595	29.094	29.014	29.24	0.0031376					6	5	2	0	0	0	0.024876	1	1759	1759		13.508	3.8618	1	30813	+		43296	25074	29916	29967	48787	48787					0.20832820872942648
LLKRWSLRHIL	11	Unmodified	_LLKRWSLRHIL_					0	0	0			REV__ENST00000371437.4_1_X:119005537-119005681:+|nuORF	REV__ENST00000371437.4_1_X:119005537-119005681:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.97479248046875	3	478.973384	1433.89832	0.078473	3.7586E-05	3.011	0.0014422	3.0894	0.0014798	478.9747108849284	107.1	0.21643	107.1	106.92	107.14	0.0018311					17	5	4	0	0	0	1.1077	1	13672	13672		9.2118	0.41249	1	446640	+		43297	31161	29917	29968	48788	48788					0.19872965947160992
LLKSLKSHL	9	Unmodified	_LLKSLKSHL_					0	0	0		ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.825439453125	2	519.837134	1037.65972	-0.49251	-0.00025603	0.78372	0.0004074	0.2912	0.00015138	519.8378397166069	81.617	0.56367	81.486	81.258	81.821	-0.13075					19	13	2	0	0	0	0.024261	1	10113	10113		54.776	0	1	142770			43298	17298	29918	29969	48789	48789					0.14239185645033103
LLKSSKISVTY	11	Unmodified	_LLKSSKISVTY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8690185546875	2	619.871371	1237.72819	0.12405	7.6895E-05	-3.5353	-0.0021914	-3.4113	-0.0021145	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0429	1	11481	11481		27.047	2.5281	1	1596200	+		43299	28266	29919	29970	48790	48790					0.11883385434248339
LLKTAKEK	8	Unmodified	_LLKTAKEK_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1;ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.90069580078125	2	465.80276	929.590967	-0.25214	-0.00011745	0.34009	0.00015842	0.087956	4.097E-05	465.80287711054655	20.497	0.54564	20.273	20.067	20.613	-0.22344					17	10	2	0	0	0	0.027866	1	511	511		29.15	0	1	128640			43300	723	29920	29971	48791	48791					0.12335521345323741
LLKTDPVAGF	10	Unmodified	_LLKTDPVAGF_					0	0	0		ENST00000560141.2_1_15:45024324-45024492:+|nuORF	ENST00000560141.2_1_15:45024324-45024492:+|nuORF	ENST00000560141.2_1_15:45024324-45024492:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.255615234375	2	530.8055	1059.59645	-1.6009	-0.00084975	4.0123	0.0021297	2.4114	0.00128	531.3092762281727	28.781	0.67189	28.781	28.318	28.99	0					27	15	3	0	0	0	0.03519	1	1719	1719		34.173	16.808	1	44460			43301	16796	29921	29972	48792	48792					0.0690320013713972
LLKTDPVAGF	10	Unmodified	_LLKTDPVAGF_					0	0	0		ENST00000560141.2_1_15:45024324-45024492:+|nuORF	ENST00000560141.2_1_15:45024324-45024492:+|nuORF	ENST00000560141.2_1_15:45024324-45024492:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.8055	1059.59645	-1.4017	-0.00074403	4.5603	0.0024206	3.1586	0.0016766	530.8085203084919	29.104	0.25824	28.859	28.709	28.967	-0.24524	0.039225	0.00036671	NaN	42.396	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33991			43302	16796	29921	29972							0.0690320013713972
LLKTKAIVNA	10	Unmodified	_LLKTKAIVNA_					0	0	0		ENSG00000104147|ENST00000220514|OIP5	ENSG00000104147|ENST00000220514|OIP5	ENSG00000104147|ENST00000220514|OIP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3306884765625	2	535.850242	1069.68593	-1.1652	-0.00062437	0.64552	0.0003459	-0.51968	-0.00027847	535.8503921278483	46.508	0.43542	46.312	46.011	46.446	-0.19664					24	11	3	0	0	0	0.03519	1	4491	4491		13.454	0	1	378270			43303	2548	29922	29973	48793	48793					0.15387454816504942
LLKTLELPHVF	11	Unmodified	_LLKTLELPHVF_					0	0	0		ENST00000485726.1_1_7:103828364-103848439:-|nuORF;nc|ENSG00000164815|O43913-2|ORC5;ENSG00000164815|ENST00000297431|ORC5	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.24530029296875	3	437.267463	1308.78056	-0.58439	-0.00025553	1.8151	0.00079368	1.2307	0.00053814	437.26819289793264	51.006	1.2044	51.093	50.648	51.852	0.087009					105	33	4	0	0	0	0.024839	1	5438	5438		6.6596	0	1	694210			43304	7324	29923	29974	48794	48794					0.13851968567837503
LLKTRESD	8	Unmodified	_LLKTRESD_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.8006286621094	2	481.269281	960.52401	-0.68638	-0.00033033	-2.5571	-0.0012307	-3.2435	-0.001561	481.26720111950215	94.243	0.11581	94.249	94.17	94.286	0.0059814					4	2	2	0	0	0	0.027866	1	11908	11908		40.573	0	1	24021			43305	1266	29924	29975	48795	48795					0.042168660635638844
LLKTSLAKSV	10	Unmodified	_LLKTSLAKSV_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7631225585938	2	530.342249	1058.66995	-0.23615	-0.00012524	2.9595	0.0015696	2.7234	0.0014443	530.3438675396312	81.806	0.383	81.613	81.377	81.76	-0.19334					11	8	2	0	0	0	0.03519	1	9859	9859		35.152	0	1	34711			43306	9816	29925	29976	48796	48796					0.14295748579593237
LLKVHKAKP	9	Unmodified	_LLKVHKAKP_					0	0	0		ENST00000504674.1_1_5:39719945-39720791:-|nuORF	ENST00000504674.1_1_5:39719945-39720791:-|nuORF	ENST00000504674.1_1_5:39719945-39720791:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3245849609375	2	517.347669	1032.68079	1.26	0.00065184	1.7286	0.00089427	2.9885	0.0015461	517.3500356292143	63.886	0.46711	63.886	63.595	64.062	0					22	12	3	0	0	0	0.024457	1	7453	7453		37.159	11.709	1	183650			43307	15719	29926	29977	48797	48797					0.16575195744530902
LLKVHKAKP	9	Unmodified	_LLKVHKAKP_					0	0	0		ENST00000504674.1_1_5:39719945-39720791:-|nuORF	ENST00000504674.1_1_5:39719945-39720791:-|nuORF	ENST00000504674.1_1_5:39719945-39720791:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.323974609375	2	517.347669	1032.68079	1.2903	0.00066752	-3.5795	-0.0018519	-2.2893	-0.0011843	517.8451087169095	63.891	0.49862	63.937	63.619	64.117	0.045502					22	13	2	0	0	0	0.024457	1	7379	7379		21.96	0	1	163290			43308	15719	29926	29977	48798	48798					0.16575195744530902
LLKVHLQT	8	Unmodified	_LLKVHLQT_					0	0	0		ENSG00000183048|ENST00000350690|SLC25A10;nc|ENSG00000183048|Q9UBX3-2|SLC25A10	ENSG00000183048|ENST00000350690|SLC25A10	ENSG00000183048|ENST00000350690|SLC25A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.302490234375	2	476.302927	950.591301	0.61599	0.0002934	-0.87204	-0.00041535	-0.25605	-0.00012196	476.3024115314426	22.866	0.55926	22.677	22.374	22.933	-0.18894					25	11	3	0	0	0	0.71833	1	860	860		65.803	2.4969	1	289000			43309	9191	29927	29978	48799	48799					0.11402941065182404
LLKVHTVIDT	10	Unmodified	_LLKVHTVIDT_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.8453979492188	2	569.845156	1137.67576	-1.874	-0.0010679	2.4396	0.0013902	0.56553	0.00032226	569.8464406403712	38.799	1.3815	38.826	38.496	39.877	0.027275					92	37	4	0	0	0	0.96965	1	3218	3218		49.442	15.269	1	1406500	+		43310	20134	29928	29979	48800	48800					0.11242847091261865
LLKVHYLCI	9	Unmodified	_LLKVHYLCI_					0	0	0			REV__nc|ENSG00000185860|Q86UF4-2|CCDC190	REV__nc|ENSG00000185860|Q86UF4-2|CCDC190	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.81787109375	2	551.328088	1100.64162	-0.49238	-0.00027146	4.4146	0.0024339	3.9222	0.0021624	551.330127776124	52.555	0.43653	52.428	52.195	52.632	-0.12705					21	10	3	0	0	0	0.024487	1	5431	5431		31.955	7.7521	1	301510	+		43311	19316	29929	29980	48801	48801					0.09532727398664065
LLKVNQEL	8	Unmodified	_LLKVNQEL_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.79278564453125	2	478.792392	955.570232	0.1056	5.056E-05	-0.45587	-0.00021827	-0.35027	-0.0001677	478.79194578600783	49.237	0.97733	49.055	48.702	49.68	-0.18206					57	25	4	0	0	0	0.20995	1	4925	4925		138.83	9.1429	1	3193100			43312	2187	29930	29981	48802	48802					0.09066930965661868
LLKVQYLSI	9	Unmodified	_LLKVQYLSI_					0	0	0		ENST00000339438.10_1_1:115282507-115292512:-|nuORF;ENST00000533818.5_1_1:115291023-115292512:-|nuORF	ENST00000339438.10_1_1:115282507-115292512:-|nuORF	ENST00000339438.10_1_1:115282507-115292512:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8214111328125	2	538.839342	1075.66413	-0.98854	-0.00053267	3.7933	0.002044	2.8047	0.0015113	539.3434371299109	64.635	0.1115	64.635	64.578	64.69	0					4	2	2	0	0	0	0.024323	1	7613	7613		35.618	6.4687	1	57785			43313	12458	29931	29982	48803	48803					0.12932650067932627
LLKVSAVVLG	10	Unmodified	_LLKVSAVVLG_					0	0	0		nc|ENSG00000140386|Q9BY12-3|SCAPER;ENSG00000140386|ENST00000563290|SCAPER;ENST00000303521.10_1_15:76673691-77134263:-|nuORF	nc|ENSG00000140386|Q9BY12-3|SCAPER	nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.90191650390625	2	499.83406	997.653567	-0.95926	-0.00047947	-0.38028	-0.00019008	-1.3395	-0.00066955	499.8337522499496	43.837	0.64066	43.692	43.425	44.065	-0.14471					49	17	4	0	0	0	0.03519	1	4112	4112		27.882	1.1893	1	2302900			43314	5405	29932	29983	48804	48804					0.15464667413516509
LLKVVAVFV	9	Unmodified	_LLKVVAVFV_					0	0	0			REV__ENST00000355947.6_1_7:99489387-99489726:-|nuORF	REV__ENST00000355947.6_1_7:99489387-99489726:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3009033203125	2	494.333696	986.652839	0.90941	0.00044955	-3.3948	-0.0016782	-2.4854	-0.0012286	494.3316207113098	96.154	0.61954	96.156	95.911	96.53	0.0020752					20	14	2	0	0	0	0.024541	1	12202	12202		19.36	0	1	170980	+		43315	30784	29933	29984	48805	48805					0.15897872764469412
LLKVVAVFV	9	Unmodified	_LLKVVAVFV_					0	0	0			REV__ENST00000355947.6_1_7:99489387-99489726:-|nuORF	REV__ENST00000355947.6_1_7:99489387-99489726:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.333696	986.652839	0.79601	0.0003935	-11.511	-0.00569	-10.714	-0.0052965	494.32762257247776	96.085	0.12653	95.962	95.898	96.025	-0.12305	-0.079522	-0.0033208	NaN	19.36	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47003	+		43316	30784	29933	29984							0.15897872764469412
LLKWQAGLRK	10	Unmodified	_LLKWQAGLRK_					0	0	0			REV__nc|ENSG00000129194|O60248-2|SOX15	REV__nc|ENSG00000129194|O60248-2|SOX15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	3	404.92403	1211.75026	-0.99259	-0.00040192	-2.7069	-0.0010961	-3.6995	-0.001498	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.1228	1	1329	1329		22.58	2.5492	1	42819000	+		43317	23036	29934	29985	48806	48806					0.15285654693298056
LLKWTYSAL	9	Unmodified	_LLKWTYSAL_					0	0	0		ENST00000221452.12_1_19:45541072-45541210:+|nuORF	ENST00000221452.12_1_19:45541072-45541210:+|nuORF	ENST00000221452.12_1_19:45541072-45541210:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	547.8131713867188	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.517	1	56.615	56.115	57.115	0.097893								0	0	0	0.1457	1	6228	6228		82.305	5.5309	1				43318	11182	29935	29986	48807	48807					0.07411790516812289
LLKYILDS	8	Unmodified	_LLKYILDS_					0	0	0		ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7620849609375	2	482.789318	963.564084	-0.60676	-0.00029294	-0.12006	-5.7966E-05	-0.72682	-0.0003509	482.7890991140217	86.421	0.68982	86.445	86.116	86.806	0.023666					25	15	2	0	0	0	0.027866	1	10759	10759		47.916	0	1	67886			43319	4048	29936	29987	48808	48808					0.08084412734137914
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.313232421875	2	521.313158	1040.61176	-1.5766	-0.0008219	1.229	0.0006407	-0.34758	-0.0001812	521.3136863289513	91.362	0.97388	91.362	91.011	91.985	0					75	22	4	0	0	0	0.013333	7	11596	11550;11560;11571;11583;11596;11610;11622		262.97	0	1	4075400	+		43320	24754	29937	29988	48809;48810;48811;48812;48813;48814;48815	48813					0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3130493164062	2	521.313158	1040.61176	-0.49514	-0.00025812	0.13111	6.835E-05	-0.36402	-0.00018977	521.3131258796121	91.344	0.96715	91.331	91.034	92.001	-0.012383					71	22	4	0	0	0	0.012289	5	11530	11520;11530;11542;11553;11568		227.71	0	1	3810400	+		43321	24754	29937	29988	48816;48817;48818;48819;48820	48817					0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.312255859375	2	521.313158	1040.61176	0.18788	9.7946E-05	-0.55454	-0.00028909	-0.36665	-0.00019114	521.3127776534839	91.353	0.92684	91.364	91.074	92	0.011276					73	21	5	0	0	0	0.014988	6	11473	11473;11484;11494;11506;11518;11533		282.2	0	1	3817400	+		43322	24754	29937	29988	48821;48822;48823;48824;48825;48826	48821					0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.3128051757812	2	521.313158	1040.61176	-1.547	-0.00080649	1.1795	0.00061486	-0.36758	-0.00019162	521.3136784544304	91.309	0.93275	91.161	90.853	91.785	-0.1487					74	21	4	0	0	0	0.013333	4	11169	11169;11181;11192;11207		195.81	0	1	4198300	+		43323	24754	29937	29988	48827;48828;48829;48830	48827					0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.31298828125	2	521.313158	1040.61176	-0.21384	-0.00011148	-0.03787	-1.9742E-05	-0.25171	-0.00013122	521.3130130300254	91.329	1.0163	91.206	90.874	91.89	-0.12341					73	23	4	0	0	0	0.013333	5	11196	11183;11196;11207;11219;11232		207.6	0	1	3753200	+		43324	24754	29937	29988	48831;48832;48833;48834;48835	48832					0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.3130493164062	2	521.313158	1040.61176	0.36145	0.00018843	-0.81444	-0.00042458	-0.45298	-0.00023614	521.3126347573634	91.313	1.9296	91.173	90.903	92.833	-0.13942					100	45	4	0	0	0	0.013333	5	11179	11168;11179;11191;11203;11215		224.43	0	1	3208400	+		43325	24754	29937	29988	48836;48837;48838;48839;48840	48837					0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	521.313158	1040.61176	-1.5766	-0.0008219	1.229	0.0006407	-0.34758	-0.0001812	521.3136863289513	91.362	0.97388	91.362	91.011	91.985	0	0.095563	0.0010126	NaN	227.71	75	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4075400	+		43326	24754	29937	29988							0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	521.313158	1040.61176	-0.49514	-0.00025812	0.13111	6.835E-05	-0.36402	-0.00018977	521.3131258796121	91.344	0.96715	91.331	91.034	92.001	-0.012383	0.065116	-0.00013208	NaN	227.71	71	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3810400	+		43327	24754	29937	29988							0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	521.313158	1040.61176	0.18788	9.7946E-05	-0.55454	-0.00028909	-0.36665	-0.00019114	521.3127776534839	91.353	0.92684	91.364	91.074	92	0.011276	0.097728	-0.00084695	NaN	227.71	73	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3817400	+		43328	24754	29937	29988							0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	521.313158	1040.61176	-1.547	-0.00080649	1.1795	0.00061486	-0.36758	-0.00019162	521.3136784544304	91.309	0.93275	91.161	90.853	91.785	-0.1487	-0.10553	0.00096095	NaN	227.71	74	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4198300	+		43329	24754	29937	29988							0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	521.313158	1040.61176	-0.21384	-0.00011148	-0.03787	-1.9742E-05	-0.25171	-0.00013122	521.3130130300254	91.329	1.0163	91.206	90.874	91.89	-0.12341	-0.060063	-0.00030826	NaN	227.71	73	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3753200	+		43330	24754	29937	29988							0.09308066934318049
LLLAELEQL	9	Unmodified	_LLLAELEQL_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	521.313158	1040.61176	0.36145	0.00018843	-0.81444	-0.00042458	-0.45298	-0.00023614	521.3126347573634	91.313	1.9296	91.173	90.903	92.833	-0.13942	-0.092814	-0.0011179	NaN	227.71	100	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3208400	+		43331	24754	29937	29988							0.09308066934318049
LLLAFGKIGTV	11	Unmodified	_LLLAFGKIGTV_					0	0	0		ENST00000323813.3_1_18:649743-649872:-|nuORF	ENST00000323813.3_1_18:649743-649872:-|nuORF	ENST00000323813.3_1_18:649743-649872:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3298950195312	2	566.360442	1130.70633	-0.5	-0.00028318	0.075187	4.2583E-05	-0.42482	-0.0002406	566.3606686876898	90.505	0.99194	90.518	90.043	91.035	0.013443					53	23	3	0	0	0	0.024776	1	11345	11345		32.812	4.9302	1	333600			43332	12246	29938	29989	48841	48841					0.14620625476322857
LLLAFNLQN	9	Unmodified	_LLLAFNLQN_					0	0	0		sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3053588867188	2	523.305667	1044.59678	-0.3005	-0.00015725	-3.5216	-0.0018429	-3.8221	-0.0020001	523.3036719773831	99.834	1.216	99.834	99.358	100.57	0					55	29	3	0	0	0	0.90698	1	12756	12756		31.955	2.8053	1	1346600			43333	37934	29939	29990	48842	48842					0.0762661985700106
LLLAHNLPQ	9	Unmodified	_LLLAHNLPQ_					0	0	0		ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	ENSG00000086548|ENST00000199764|CEACAM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8038024902344	2	509.805834	1017.59712	-0.17148	-8.7423E-05	-4.049	-0.0020642	-4.2205	-0.0021516	509.80368236575634	98.113	1.9328	98.113	97.771	99.704	0					58	44	2	0	0	0	0.92825	1	12538	12538		30.504	0.18592	1	902990			43334	1817	29940	29991	48843	48843					0.08902039576844345
LLLAIAGDVSF	11	Unmodified	_LLLAIAGDVSF_					0	0	0		ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7578125	2	559.826432	1117.63831	0.060241	3.3725E-05	-0.61909	-0.00034658	-0.55885	-0.00031286	559.8259987466658	71.4	0.81915	71.138	70.779	71.598	-0.26199					32	19	2	0	0	0	0.024759	1	8391	8391		42.396	0	1	336670			43335	10749	29941	29992	48844	48844					0.08419755825661923
LLLAIAGDVSF	11	Unmodified	_LLLAIAGDVSF_					0	0	0		ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	ENSG00000237524|ENST00000568484|TEX51	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	559.826432	1117.63831	0.55741	0.00031205	-1.1022	-0.00061704	-0.54479	-0.00030499	559.8255281421342	71.124	0.57939	71.124	70.948	71.528	0	0.0088309	-0.00026616	NaN	42.396	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310790			43336	10749	29941	29992							0.08419755825661923
LLLAIEICTG	10	Unmodified	_LLLAIEICTG_					0	0	0		ENSG00000205863|ENST00000382137|C1QTNF9B;ENSG00000240654|ENST00000332018|C1QTNF9;nc|ENSG00000205863|B2RNN3-2|C1QTNF9B	ENSG00000205863|ENST00000382137|C1QTNF9B	ENSG00000205863|ENST00000382137|C1QTNF9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3035278320312	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	1.0004	1	10845	10845		45.952	1.5748	1	10615000			43337	10452	29942	29993	48845	48845					0.06840724545190824
LLLAIEICTG	10	Unmodified	_LLLAIEICTG_					0	0	0		ENSG00000205863|ENST00000382137|C1QTNF9B;ENSG00000240654|ENST00000332018|C1QTNF9;nc|ENSG00000205863|B2RNN3-2|C1QTNF9B	ENSG00000205863|ENST00000382137|C1QTNF9B	ENSG00000205863|ENST00000382137|C1QTNF9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3035888671875	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	1.0665	1	10844	10844		37.159	4.3467	1	14072000			43338	10452	29942	29993	48846	48846					0.06840724545190824
LLLALGLMA	9	Unmodified	_LLLALGLMA_					0	0	0		ENSG00000169194|ENST00000304506|IL13	ENSG00000169194|ENST00000304506|IL13	ENSG00000169194|ENST00000304506|IL13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.2644958496094	2	457.790807	913.56706	0.39556	0.00018108	3.4785	0.0015924	3.8741	0.0017735	457.7942243726042	81.519	0.24948	81.29	81.229	81.479	-0.2289					6	5	2	0	0	0	0.024475	1	9817	9817		29.842	0	1	16410			43339	7911	29943	29994	48847	48847					0.10681964587286075
LLLALQTLF	9	Unmodified	_LLLALQTLF_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3193969726562	2	516.328611	1030.64267	0.090489	4.6722E-05	-0.65293	-0.00033713	-0.56244	-0.0002904	516.3280780415196	68.377	0.8531	68.085	67.781	68.634	-0.29267					35	21	2	0	0	0	0.024	1	8153	8153		55.504	16.698	1	1418800			43340	17723	29944	29995	48848	48848					0.12857265039201593
LLLALQTLF	9	Unmodified	_LLLALQTLF_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.328611	1030.64267	-0.089987	-4.6463E-05	-1.1136	-0.00057497	-1.2036	-0.00062143	516.3275387883848	68.409	0.65157	68.148	67.814	68.466	-0.26166	0.065251	-0.00038804	NaN	55.504	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346380			43341	17723	29944	29995							0.12857265039201593
LLLALQTLF	9	Unmodified	_LLLALQTLF_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.328611	1030.64267	0.4848	0.00025032	-2.0132	-0.0010395	-1.5284	-0.00078913	516.3270239649396	68.333	0.68257	68.099	67.756	68.439	-0.23376	0.016346	-0.001317	NaN	55.504	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368610			43342	17723	29944	29995							0.12857265039201593
LLLALQTLF	9	Unmodified	_LLLALQTLF_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|10|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.328611	1030.64267	0.45797	0.00023646	-0.91233	-0.00047106	-0.45436	-0.0002346	516.3279875529312	68.247	0.48004	68.017	67.715	68.195	-0.23047	-0.065668	-0.00018023	NaN	55.504	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401540			43343	17723	29944	29995							0.12857265039201593
LLLAPVLWRA	10	Unmodified	_LLLAPVLWRA_					0	0	0		ENST00000491166.1_1_13:114201574-114203850:+|nuORF;ENST00000460039.5_1_13:114200091-114203850:+|nuORF;ENSG00000150403|ENST00000434316|TMCO3	ENST00000491166.1_1_13:114201574-114203850:+|nuORF	ENST00000491166.1_1_13:114201574-114203850:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2796020507812	2	576.368601	1150.72265	-0.52192	-0.00030082	0.86221	0.00049695	0.3403	0.00019614	576.3691722643838	40.273	0.83924	40.124	39.859	40.698	-0.1497					26	22	2	0	0	0	0.03519	1	3452	3452		16.473	1.6083	1	221300			43344	6134	29945	29996	48849	48849					0.15331751433086538
LLLAPVVFFI	10	Unmodified	_LLLAPVVFFI_					0	0	0			REV__ENST00000526349.5_1_8:42716994-42725245:-|nuORF	REV__ENST00000526349.5_1_8:42716994-42725245:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3296508789062	2	566.362453	1130.71035	0.13443	7.6135E-05	-3.4464	-0.0019519	-3.312	-0.0018758	566.3603732243132	89.395	0.67792	89.257	89.028	89.706	-0.13761					37	15	3	0	0	0	0.03519	1	10933	10933		35.201	0	1	282700	+		43345	34441	29946	29997	48850	48850					0.15022714970041307
LLLAQRGM	8	Unmodified	_LLLAQRGM_					0	0	0			REV__ENST00000477639.5_1_7:44621634-44621805:-|nuORF	REV__ENST00000477639.5_1_7:44621634-44621805:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2496032714844	2	451.26803	900.521507	-1.0306	-0.00046506	-2.5573	-0.001154	-3.5878	-0.0016191	451.26674371655974	37.663	0.65372	37.445	37.028	37.681	-0.21848					21	16	2	0	0	0	0.027866	1	2980	2980		28.254	0	1	134670	+		43346	25206	29947	29998	48851	48851					0.06726739124928827
LLLAQRGM	8	Unmodified	_LLLAQRGM_					0	0	0			REV__ENST00000477639.5_1_7:44621634-44621805:-|nuORF	REV__ENST00000477639.5_1_7:44621634-44621805:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.26803	900.521507	0.18023	8.1332E-05	-4.0791	-0.0018408	-3.8989	-0.0017595	451.26603095708003	37.628	0.3472	37.435	37.269	37.616	-0.193	-0.0051532	-0.00076362	NaN	28.254	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98803	+		43347	25206	29947	29998							0.06726739124928827
LLLASGWEGL	10	Unmodified	_LLLASGWEGL_					0	0	0		ENST00000393946.6_1_11:66774383-66774566:+|nuORF	ENST00000393946.6_1_11:66774383-66774566:+|nuORF	ENST00000393946.6_1_11:66774383-66774566:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.32666015625	2	529.797675	1057.5808	-0.14818	-7.8508E-05	0.21983	0.00011647	0.071649	3.796E-05	529.7976328182452	74.704	1.0378	74.704	74.34	75.378	0					70	25	4	0	0	0	0.03519	1	9121	9121		45.952	0	1	1316900			43348	13477	29948	29999	48852	48852					0.054309136201027286
LLLASPAAAM	10	Unmodified	_LLLASPAAAM_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2773132324219	2	479.275521	956.536489	0.97614	0.00046784	3.0162	0.0014456	3.9924	0.0019134	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	1.1166	1	10275	10275		30.504	1.3541	1	7774800	+		43349	28454	29949	30000	48853	48853					0.05648186202245142
LLLASPAAAM	10	Unmodified	_LLLASPAAAM_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27734375	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	1.0665	1	10161	10161		37.159	3.6435	1	7158600	+		43350	28454	29949	30000	48854	48854					0.05648186202245142
LLLATSDKP	9	Unmodified	_LLLATSDKP_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.300048828125	2	479.2844	956.554247	-0.40867	-0.00019587	2.7392	0.0013128	2.3305	0.001117	479.28518105432727	37.713	0.4754	37.745	37.413	37.889	0.032269					18	12	2	0	0	0	0.024205	1	3061	3061		63.306	9.9548	1	105300			43351	6550	29950	30001	48855	48855					0.07423224728768218
LLLAWLALP	9	Unmodified	_LLLAWLALP_					0	0	0			REV__ENSG00000105509|ENST00000540069|HAS1	REV__ENSG00000105509|ENST00000540069|HAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.8248596191406	2	505.325871	1008.63719	-0.75385	-0.00038094	-4.2575	-0.0021514	-5.0113	-0.0025324	505.324085613359	79.222	5.1637	79.05	78.611	83.775	-0.17226					329	123	6	0	0	0	0.48384	1	9903	9903		60.404	7.0522	1	92209000	+		43352	21533	29951	30002	48856	48856					0.1332158624740032
LLLCFEEIS	9	Unmodified	_LLLCFEEIS_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.8345336914062	2	533.778093	1065.54163	-0.14638	-7.8135E-05	-1.5597	-0.00083252	-1.7061	-0.00091066	534.2781844866266	81.116	0.3698	80.916	80.673	81.043	-0.2001					10	8	2	0	0	0	0.024517	1	9757	9757		26.796	7.4361	1	32075			43353	8885	29952	30003	48857	48857					0.01148445274225196
LLLCFQVQVL	10	Unmodified	_LLLCFQVQVL_					0	0	0		ENSG00000156427|ENST00000274625|FGF18	ENSG00000156427|ENST00000274625|FGF18	ENSG00000156427|ENST00000274625|FGF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3195190429688	2	588.346477	1174.6784	-1.1633	-0.0006844	4.3918	0.0025839	3.2285	0.0018995	588.349028222999	53.951	0.62958	53.804	53.602	54.232	-0.14723					38	17	3	0	0	0	0.03519	1	5878	5878		27.882	5.9224	1	1287400			43354	6527	29953	30004	48858	48858					0.09804979224600174
LLLCIHLW	8	Unmodified	_LLLCIHLW_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|327|3|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|327|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3108825683594	2	505.796423	1009.57829	-1.2045	-0.00060922	3.7489	0.0018962	2.5444	0.0012869	505.79828966525264	48.443	0.42822	48.167	48.004	48.433	-0.27598					16	11	2	0	0	0	0.027866	1	4795	4795		54.895	6.979	1	135560	+		43355	36274	29954	30005	48859	48859					0.07388786681428883
LLLCLIELL	9	Unmodified	_LLLCLIELL_					0	0	0			REV__ENSG00000124571|ENST00000265351|XPO5	REV__ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2994995117188	2	521.832672	1041.65079	0.35677	0.00018617	1.4902	0.00077764	1.847	0.00096381	522.3343798703771	69.514	0.65792	69.264	68.95	69.608	-0.25063					20	15	2	0	0	0	0.024541	1	8047	8047		7.6903	0	1	107170	+		43356	22773	29955	30006	48860	48860					0.13163075964348536
LLLCLSISPQP	11	Unmodified	_LLLCLSISPQP_					0	0	0		ENST00000534472.5_1_11:125479379-125479505:+|nuORF	ENST00000534472.5_1_11:125479379-125479505:+|nuORF	ENST00000534472.5_1_11:125479379-125479505:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	592.8692626953125	2	592.341392	1182.66823	-0.9101	-0.00053909	-2.1722	-0.0012867	-3.0823	-0.0018258	592.8413935995472	102.77	0.42609	102.78	102.54	102.97	0.0054245					14	10	2	0	0	0	0.024732	1	13133	13133		25.574	0	1	237920			43357	16330	29956	30007	48861	48861					0.08420371499346402
LLLCLSNLM	9	Unmodified	_LLLCLSNLM_					0	0	0		nc|ENSG00000137103|A6NDV4-2|TMEM8B;nc|ENSG00000137103|A6NDV4|TMEM8B;ENSG00000137103|ENST00000643932|TMEM8B;nc|ENSG00000137103|A6NDV4-3|TMEM8B	nc|ENSG00000137103|A6NDV4-2|TMEM8B	nc|ENSG00000137103|A6NDV4-2|TMEM8B	MSMS	OPSCC_40_ClassI_Rep-2	5	510.28466796875	2	510.285031	1018.55551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.815	1	66.592	66.092	67.092	-0.22374								0	0	0	0.65271	1	7682	7682		30.504	2.2494	1				43358	5090	29957	30008	48862	48862					0.046973995016401204
LLLCSRSSVE	10	Unmodified	_LLLCSRSSVE_					0	0	0		nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.3242797851562	2	553.797349	1105.58014	0.058309	3.2291E-05	-0.285	-0.00015783	-0.2267	-0.00012554	553.7969320264652	50.558	0.74624	50.446	49.966	50.712	-0.11163					26	19	2	0	0	0	0.03519	1	5144	5144		32.812	10.853	1	201210			43359	9227	29958	30009	48863	48863					0.03157750908735579
LLLDDGLLSL	10	Unmodified	_LLLDDGLLSL_					0	0	0			REV__ENSG00000153820|ENST00000392056|SPHKAP	REV__ENSG00000153820|ENST00000392056|SPHKAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.2364501953125	2	536.31844	1070.62233	-0.19787	-0.00010612	2.5434	0.0013641	2.3455	0.0012579	536.3203272990359	69.428	0.20277	69.177	69.033	69.236	-0.25063					6	4	2	0	0	0	0.03519	1	8050	8050		34.173	0	1	60584	+		43360	24912	29959	30010	48864	48864					0.08984049588775633
LLLDELVAL	9	Unmodified	_LLLDELVAL_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.8105163574219	2	499.810251	997.605948	-0.084661	-4.2314E-05	0.36285	0.00018135	0.27818	0.00013904	499.8101412950059	103.35	0.4592	103.36	103.18	103.64	0.0054169					17	10	2	0	0	0	0.88411	1	13242	13242		33.516	0.70317	1	141820			43361	3455	29960	30011	48865	48865					0.10704968422658112
LLLDLIAAGV	10	Unmodified	_LLLDLIAAGV_					0	0	0			REV__ENST00000464544.1_2_11:62476673-62477070:-|nuORF	REV__ENST00000464544.1_2_11:62476673-62477070:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.76690673828125	2	499.318243	996.621933	0.65395	0.00032653	-3.7126	-0.0018538	-3.0587	-0.0015273	499.31624498618567	40.88	0.85326	40.756	40.441	41.294	-0.12317					64	23	4	0	0	0	0.03519	1	3563	3563		16.473	0	1	2253300	+		43362	32979	29961	30012	48866	48866					0.12348674659574499
LLLDLKHS	8	Unmodified	_LLLDLKHS_					0	0	0		ENSG00000170681|ENST00000307584|CAVIN4	ENSG00000170681|ENST00000307584|CAVIN4	ENSG00000170681|ENST00000307584|CAVIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7691955566406	2	469.78711	937.559667	-0.54472	-0.0002559	-0.85807	-0.00040311	-1.4028	-0.00065901	469.78656928712104	64.757	0.48407	64.757	64.46	64.944	0					17	12	2	0	0	0	0.027866	1	7638	7638		35.201	1.6851	1	193370			43363	8068	29962	30013	48867	48867					0.08838948311233707
LLLDLNATDP	10	Unmodified	_LLLDLNATDP_					0	0	0		nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7960815429688	2	542.797872	1083.58119	-0.28428	-0.00015431	3.5619	0.0019334	3.2776	0.0017791	542.7996369913358	39.898	0.50971	39.898	39.627	40.137	0					24	13	2	0	0	0	0.59716	1	3478	3478		77.318	6.0219	1	1004200			43364	9796	29963	30014	48868	48868					0.042742885492771165
LLLDLRQK	8	Unmodified	_LLLDLRQK_					0	0	0		nc|ENSG00000133997|O75586-2|MED6;ENSG00000133997|ENST00000256379|MED6;MED6|p.D178N|1|0.27|ENSG00000133997|chr14:70591316-70591316|C/T|missense_variant	nc|ENSG00000133997|O75586-2|MED6	nc|ENSG00000133997|O75586-2|MED6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.73773193359375	2	499.821484	997.628415	-1.2934	-0.00064649	1.0537	0.00052666	-0.23973	-0.00011982	499.8218173939302	33.422	0.44084	33.257	33.038	33.479	-0.16565					27	10	4	0	0	0	0.027866	1	2391	2391		25.45	4.9683	1	249510			43365	4742	29964	30015	48869	48869					0.1295061261095043
LLLDLYCQ	8	Unmodified	_LLLDLYCQ_					0	0	0			REV__UIMC1|p.G319Sfs*15|1|0.07|ENSG00000087206|chr5:176968800-176968801|-/AAGGA|frameshift_variant	REV__UIMC1|p.G319Sfs*15|1|0.07|ENSG00000087206|chr5:176968800-176968801|-/AAGGA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.25921630859375	2	490.759704	979.504854	0.019552	9.5951E-06	-0.58731	-0.00028823	-0.56776	-0.00027863	490.75936201377107	97.562	0.91669	97.562	97.147	98.063	0					33	20	2	0	0	0	0.027866	1	12460	12460		19.36	0	1	61237	+		43366	37758	29965	30016	48870	48870					0.014281934483051373
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3077392578125	2	506.307875	1010.6012	-0.71844	-0.00036375	0.49626	0.00025126	-0.22219	-0.0001125	506.3080906255929	84.017	1.1096	84.017	83.477	84.587	0					66	25	5	0	0	0	0.79525	1	10515	10515		60.972	21.719	1	983930			43367	10597	29966	30017	48871	48871					0.09632084279905939
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3073425292969	2	506.307875	1010.6012	-0.99409	-0.00050332	0.88018	0.00044564	-0.11391	-5.7672E-05	506.3082412801873	84.059	1.0617	83.986	83.486	84.548	-0.072769					55	24	4	0	0	0	0.71272	1	10480	10480		66.429	22.052	1	1010800			43368	10597	29966	30017	48872	48872					0.09632084279905939
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.30706787109375	2	506.307875	1010.6012	-0.60771	-0.00030769	0.71461	0.00036181	0.1069	5.4126E-05	506.30812060812616	83.984	1.1116	84.011	83.427	84.538	0.026558					59	25	4	0	0	0	0.96965	1	10418	10418		49.442	7.0454	1	1033700			43369	10597	29966	30017	48873	48873					0.09632084279905939
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.3077392578125	2	506.307875	1010.6012	0.6115	0.00030961	-0.40989	-0.00020753	0.20161	0.00010208	506.30754760851704	84.013	1.1867	83.802	83.264	84.451	-0.21159					68	27	4	0	0	0	0.67706	3	10131	10131;10142;10155		68.787	15.435	1	1253800			43370	10597	29966	30017	48874;48875;48876	48874					0.09632084279905939
LLLDVPTAAV	10	Unmodified	_LLLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.30743408203125	2	506.307875	1010.6012	0.15853	8.0265E-05	0.051471	2.606E-05	0.21	0.00010633	506.3077712435844	83.991	1.2368	83.853	83.383	84.62	-0.13789					60	28	4	0	0	0	1.0393	1	10125	10125		40.778	1.972	1	1196600			43371	10597	29966	30017	48877	48877					0.09632084279905939
LLLDVTLV	8	Unmodified	_LLLDVTLV_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2428894042969	2	443.286411	884.55827	-1.6211	-0.00071862	2.829	0.0012541	1.2079	0.00053546	443.2875113608342	38.335	0.099407	38.362	38.298	38.397	0.027275					4	2	2	0	0	0	0.027866	1	3149	3149		46.766	0	1	47664			43372	8434	29967	30018	48878	48878					0.11137314222480654
LLLEAKEEL	9	Unmodified	_LLLEAKEEL_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3109741210938	2	529.310615	1056.60668	-0.91976	-0.00048684	0.97414	0.00051562	0.05438	2.8784E-05	529.3109195178018	57.022	1.1066	57.022	56.46	57.567	0					112	30	5	0	0	0	0.067814	1	6398	6398		122.18	0	1	8873500	+		43373	26228	29968	30019	48879	48879					0.08063763071709218
LLLEKQLH	8	Unmodified	_LLLEKQLH_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.30218505859375	2	497.30821	992.601866	-0.035774	-1.7791E-05	-0.51206	-0.00025465	-0.54784	-0.00027244	497.3076867140673	81.988	0.65173	81.988	81.711	82.363	0					35	15	3	0	0	0	0.53523	1	10235	10235		82.305	2.854	1	927100	+		43374	21929	29969	30020	48880	48880					0.10526923719623937
LLLEKQLH	8	Unmodified	_LLLEKQLH_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.3031921386719	2	497.30821	992.601866	-0.255	-0.00012681	-0.42177	-0.00020975	-0.67677	-0.00033656	497.30776886224874	81.932	0.69833	81.958	81.66	82.358	0.025711					37	16	3	0	0	0	0.33369	1	10153	10153		106.42	12.409	1	959570	+		43375	21929	29969	30020	48881	48881					0.10526923719623937
LLLELNTID	9	Unmodified	_LLLELNTID_					0	0	0		ENST00000301399.11_1_19:52376656-52376935:-|nuORF	ENST00000301399.11_1_19:52376656-52376935:-|nuORF	ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.246826171875	2	522.30279	1042.59103	-1.2528	-0.00065433	-1.5334	-0.00080091	-2.7862	-0.0014552	522.3029704746166	83.932	0.52229	83.932	83.562	84.084	0					16	11	2	0	0	0	0.024457	1	10451	10451		15.642	0.77694	1	51840			43376	11927	29970	30021	48882	48882					0.0714347655466554
LLLENHLCV	9	Unmodified	_LLLENHLCV_					0	0	0		ENSG00000196917|ENST00000432564|HCAR1	ENSG00000196917|ENST00000432564|HCAR1	ENSG00000196917|ENST00000432564|HCAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.28955078125	2	527.291702	1052.56885	0.39544	0.00020851	-1.6914	-0.00089186	-1.296	-0.00068335	527.290534281171	104.08	0.63309	103.91	103.6	104.23	-0.1679					46	16	4	0	0	0	0.4752	1	12943	12943		60.972	0	1	592460			43377	9933	29971	30022	48883	48883					0.044669736052583175
LLLENPYY	8	Unmodified	_LLLENPYY_					0	0	0		nc|ENSG00000164074|Q0P651-3|ABHD18;nc|ENSG00000164074|Q0P651-2|ABHD18;ENST00000473040.6_1_4:128905516-128956965:+|nuORF;nc|ENSG00000164074|Q0P651|ABHD18;ENSG00000164074|ENST00000645843|ABHD18	nc|ENSG00000164074|Q0P651-3|ABHD18	nc|ENSG00000164074|Q0P651-3|ABHD18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7164916992188	2	512.771126	1023.5277	-1.0725	-0.00054992	-1.3827	-0.00070903	-2.4552	-0.001259	512.7703102365238	56.086	0.59646	55.871	55.602	56.198	-0.21551					27	15	3	0	0	0	0.027866	1	6013	6013		50.025	4.0523	1	451060			43378	7205	29972	30023	48884	48884					0.016875358374250027
LLLEPSPQP	9	Unmodified	_LLLEPSPQP_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.28167724609375	2	497.2844	992.554247	0.16725	8.3171E-05	-3.9086	-0.0019437	-3.7413	-0.0018605	497.2826909892045	81.933	1.2903	81.74	81.419	82.709	-0.19334					41	29	2	0	0	0	0.2508	1	9876	9876		82.241	8.2658	1	1152200	+		43379	28401	29973	30024	48885	48885					0.05767224728765541
LLLEQVAP	8	Unmodified	_LLLEQVAP_					0	0	0			REV__NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	REV__NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7684020996094	2	441.768386	881.522219	-0.32178	-0.00014215	-0.70805	-0.00031279	-1.0298	-0.00045495	441.7681351071089	102.79	1.3357	102.79	102.48	103.82	0					96	32	5	0	0	0	0.91239	1	13233	13233		50.025	2.1089	1	28165000	+		43380	28698	29974	30025	48886	48886					0.07671857045613706
LLLERYPE	8	Unmodified	_LLLERYPE_					0	0	0		SH3GL1-STAP2|1|fusion;ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2	SH3GL1-STAP2|1|fusion	SH3GL1-STAP2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.240478515625	2	516.78985	1031.56515	0.056612	2.9257E-05	3.4575	0.0017868	3.5141	0.0018161	517.2948396950711	78.857	0.38517	78.603	78.471	78.856	-0.25471					11	8	2	0	0	0	0.027866	1	9409	9409		47.916	22.342	1	76079			43381	8790	29975	30026	48887	48887					0.05062627103052364
LLLEVPIMIL	10	Unmodified	_LLLEVPIMIL_					0	0	0			REV__ENSG00000175336|ENST00000398189|APOF	REV__ENSG00000175336|ENST00000398189|APOF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.3662719726562	2	577.366878	1152.7192	-0.17168	-9.9121E-05	-0.37581	-0.00021698	-0.54749	-0.0003161	577.3665334259606	101.3	0.81555	101.13	100.88	101.69	-0.17178					47	17	4	0	0	0	1.1166	1	12552	12552		30.504	0.18592	1	911130	+		43382	26942	29976	30027	48888	48888					0.1489532054420124
LLLFDSILN	9	Unmodified	_LLLFDSILN_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3240966796875	2	524.307875	1046.6012	-0.22668	-0.00011885	-0.85541	-0.0004485	-1.0821	-0.00056735	524.3072057376963	72.037	1.3055	72.037	71.604	72.91	0					46	32	2	0	0	0	0.024354	1	8751	8751		38.806	0	1	3321800	+		43383	21377	29977	30028	48889	48889					0.07976084279903262
LLLFFAILI	9	Unmodified	_LLLFFAILI_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7972412109375	2	531.851722	1061.68889	-0.77396	-0.00041163	2.5992	0.0013824	1.8253	0.00097078	531.8540963754667	93.79	0.1997	93.788	93.708	93.908	-0.0021667					5	4	2	0	0	0	0.024541	1	11884	11884		21.702	0	1	37788			43384	202	29978	30029	48890	48890					0.16051329941319636
LLLFFMII	8	Unmodified	_LLLFFMII_					0	0	0		ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.78704833984375	2	505.311375	1008.6082	-0.41802	-0.00021123	-0.27224	-0.00013757	-0.69026	-0.0003488	505.3111026876073	46.83	1.1332	46.677	46.376	47.51	-0.15301					74	30	5	0	0	0	0.027866	1	4657	4657		33.493	0	1	4126300			43385	9579	29979	30030	48891	48891					0.10423725626776559
LLLFFTLLL	9	Unmodified	_LLLFFTLLL_					0	0	0			REV__ENSG00000214063|ENST00000397397|TSPAN4	REV__ENSG00000214063|ENST00000397397|TSPAN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.8403930664062	2	546.857004	1091.69945	0.39684	0.00021701	-0.58421	-0.00031948	-0.18737	-0.00010247	546.8556362344397	99.823	0.29494	99.688	99.424	99.719	-0.13526					9	6	2	0	0	0	0.024517	1	12376	12376		26.796	17.974	1	55449	+		43386	28770	29980	30031	48892	48892					0.15727312595754483
LLLFILSSI	9	Unmodified	_LLLFILSSI_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.7635192871094	2	509.830986	1017.64742	-0.24128	-0.00012301	0.18578	9.4717E-05	-0.055494	-2.8293E-05	509.83126124593707	49.384	0.11157	49.104	49.011	49.123	-0.27977					4	2	2	0	0	0	0.024466	1	4941	4941		33.516	0	1	43863			43387	8092	29981	30032	48893	48893					0.1393014918199924
LLLFKDVKN	9	Unmodified	_LLLFKDVKN_					0	0	0		ENST00000470012.1_1_2:73959253-73964442:-|nuORF;ENST00000497464.5_1_2:73957656-73964442:-|nuORF;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	ENST00000470012.1_1_2:73959253-73964442:-|nuORF	ENST00000470012.1_1_2:73959253-73964442:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.331787109375	2	545.336967	1088.65938	-0.6052	-0.00033004	-2.9831	-0.0016268	-3.5883	-0.0019568	545.3352759136492	105.47	0.38431	105.47	105.32	105.71	0.00096893					23	13	2	0	0	0	0.87448	1	13520	13520		34.173	0	1	210980			43388	5714	29982	30033	48894	48894					0.11859765925191823
LLLFLAILI	9	Unmodified	_LLLFLAILI_					0	0	0		sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8028564453125	2	514.859547	1027.70454	0.98217	0.00050568	-1.0943	-0.00056341	-0.11213	-5.7732E-05	514.8591943981369	59.693	0.19089	59.693	59.52	59.711	0					6	4	2	0	0	0	0.024541	1	6811	6811		8.8223	0	1	135910			43389	37936	29983	30034	48895	48895					0.19179616458359305
LLLFLLSW	8	Unmodified	_LLLFLLSW_					0	0	0		ENST00000382357.3_1_21:34400498-34400627:+|nuORF	ENST00000382357.3_1_21:34400498-34400627:+|nuORF	ENST00000382357.3_1_21:34400498-34400627:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.81378173828125	2	502.812596	1003.61064	-0.30262	-0.00015216	2.2596	0.0011362	1.957	0.000984	502.8138186792779	96.134	1.9926	96.134	95.735	97.727	0					171	45	6	0	0	0	1.0472	1	12293	12293		29.842	0	1	20832000			43390	13359	29984	30035	48896	48896					0.10897897356085195
LLLFLPPLL	9	Unmodified	_LLLFLPPLL_					0	0	0		ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.8206787109375	2	519.851722	1037.68889	-0.13109	-6.8145E-05	1.17	0.00060825	1.039	0.0005401	519.8527224345248	80.666	0.24446	80.429	80.206	80.45	-0.23784					10	5	2	0	0	0	0.024541	1	9661	9661		14.664	0	1	86188			43391	10597	29985	30036	48897	48897					0.17155329941329
LLLFLVLSLVF	11	Unmodified	_LLLFLVLSLVF_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.23486328125	3	426.280821	1275.82063	-0.34622	-0.00014759	-1.4091	-0.00060068	-1.7553	-0.00074827	426.28193211975486	27.679	0.18643	27.76	27.646	27.833	0.081291					9	4	3	0	0	0	0.024873	1	1480	1480		9.6461	2.2464	1	127330			43392	999	29986	30037	48898	48898					0.1937551523840284
LLLFNLLLP	9	Unmodified	_LLLFNLLLP_					0	0	0		ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3267211914062	2	528.346803	1054.67905	-0.15134	-7.996E-05	-2.3545	-0.001244	-2.5058	-0.001324	528.3478485272393	66.047	0.19185	66.047	65.913	66.105	0					6	4	2	0	0	0	0.024443	1	7847	7847		44.531	9.3304	1	35803			43393	12815	29987	30038	48899	48899					0.15390141935949941
LLLFPLFGGL	10	Unmodified	_LLLFPLFGGL_					0	0	0			REV__ENSG00000175514|ENST00000312457|GPR152	REV__ENSG00000175514|ENST00000312457|GPR152	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2822265625	2	545.338978	1088.6634	0.18121	9.8821E-05	2.2572	0.0012309	2.4384	0.0013298	545.3408272080183	50.843	0.33422	50.732	50.525	50.859	-0.11163					14	8	3	0	0	0	0.03519	1	5170	5170		19.36	0	1	409500	+		43394	26955	29988	30039	48900	48900					0.12261855418887535
LLLGAELPG	9	Unmodified	_LLLGAELPG_					0	0	0			REV__ENST00000506485.1_1_5:114937968-114938790:+|nuORF	REV__ENST00000506485.1_1_5:114937968-114938790:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7669677734375	2	441.768386	881.522219	0.37011	0.0001635	-1.3269	-0.00058618	-0.95679	-0.00042268	441.76786199204633	102.85	1.6021	102.85	102.5	104.11	-0.0046005					103	38	6	0	0	0	0.88411	1	13102	13102		33.516	0	1	25278000	+		43395	34028	29989	30040	48901	48901					0.07671857045613706
LLLGARVM	8	Unmodified	_LLLGARVM_					0	0	0			REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF	REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.77490234375	2	436.772948	871.531344	0.53541	0.00023385	3.5556	0.001553	4.091	0.0017868	436.77442646981	90.011	2.1118	90.025	89.55	91.662	0.013443					149	50	5	0	0	0	1.0472	1	11302	11302		29.842	0	1	34213000	+		43396	32664	29990	30041	48902	48902					0.09043927130301199
LLLGDHHLLT	10	Unmodified	_LLLGDHHLLT_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.2750854492188	2	566.329673	1130.64479	-0.60721	-0.00034388	0.24443	0.00013843	-0.36278	-0.00020546	566.3296813067114	60.263	0.67293	60.062	59.761	60.434	-0.20016					49	17	4	0	0	0	0.03519	1	6938	6938		44.117	5.3107	1	1235900	+		43397	27746	29991	30042	48903	48903					0.08469693777033172
LLLGFALVQP	10	Unmodified	_LLLGFALVQP_					0	0	0			REV__ENSG00000119888|ENST00000263735|EPCAM	REV__ENSG00000119888|ENST00000263735|EPCAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.8155517578125	2	535.83406	1069.65357	-0.046441	-2.4885E-05	-3.8282	-0.0020513	-3.8747	-0.0020762	535.8318093840277	72.056	0.69601	71.794	71.52	72.216	-0.26199					34	16	3	0	0	0	0.03519	1	8417	8417		31.955	0	1	370260	+		43398	22494	29992	30043	48904	48904					0.12152667413533891
LLLGKICN	8	Unmodified	_LLLGKICN_					0	0	0		nc|ENSG00000187908|Q9UGM3-9|DMBT1;nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1	nc|ENSG00000187908|Q9UGM3-9|DMBT1	nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.77490234375	2	437.264956	872.515359	0.51746	0.00022627	-2.7682	-0.0012104	-2.2508	-0.00098418	437.2635953050615	90.088	0.19698	90.102	89.924	90.121	0.013443					5	4	2	0	0	0	0.027866	1	11302	11302		21.702	0	1	140360			43399	9674	29993	30044	48905	48905					0.07400220893384812
LLLGKSEL	8	Unmodified	_LLLGKSEL_					0	0	0			REV__ENSG00000146282|ENST00000369536|RARS2	REV__ENSG00000146282|ENST00000369536|RARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.77447509765625	2	436.776211	871.537869	-0.42442	-0.00018538	-2.8951	-0.0012645	-3.3196	-0.0014499	436.77487826052743	90.03	2.3328	90.03	89.44	91.772	0					165	55	5	0	0	0	1.0574	2	11397	11397;11422		26.796	0	1	38190000	+		43400	24476	29994	30045	48906;48907	48906					0.09696143562666748
LLLGLCLY	8	Unmodified	_LLLGLCLY_					0	0	0		ENSG00000162951|ENST00000295057|LRRTM1;LRRTM1|p.F3S|1|0.23|ENSG00000162951|chr2:80303812-80303812|A/G|missense_variant	ENSG00000162951|ENST00000295057|LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.2374267578125	2	454.269707	906.524861	-0.06704	-3.0454E-05	3.7178	0.0016889	3.6507	0.0016584	454.2714907720881	43.444	0.42879	43.332	42.997	43.426	-0.11253					25	11	4	0	0	0	0.027866	1	3997	3997		33.493	13.496	1	386210			43401	7018	29995	30046	48908	48908					0.06785989178911223
LLLGLFVGSL	10	Unmodified	_LLLGLFVGSL_					0	0	0			REV__ENST00000578199.5_1_17:37873700-37873802:+|nuORF	REV__ENST00000578199.5_1_17:37873700-37873802:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3138427734375	2	516.328611	1030.64267	-0.28076	-0.00014496	0.30785	0.00015895	0.027088	1.3986E-05	516.3290974855881	97.948	0.3831	97.948	97.639	98.022	0					12	8	2	0	0	0	0.03519	1	12506	12506		29.15	0	1	182100	+		43402	35490	29996	30047	48909	48909					0.1285726503922433
LLLGLGAPP	9	Unmodified	_LLLGLGAPP_					0	0	0			REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7747802734375	2	425.773471	849.53239	-0.086541	-3.6847E-05	3.0095	0.0012814	2.923	0.0012445	425.7747981740325	42.002	1.1717	42.002	41.579	42.75	0					125	33	6	0	0	0	0.99355	1	3823	3823		21.702	0	1	65572000	+		43403	33121	29997	30048	48910	48910					0.10160464770854105
LLLGLGAPP	9	Unmodified	_LLLGLGAPP_					0	0	0			REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7751159667969	2	425.773471	849.53239	0.17338	7.3822E-05	2.9368	0.0012504	3.1102	0.0013242	425.77467244094674	42.032	1.0796	41.909	41.603	42.683	-0.12299					99	28	5	0	0	0	0.99355	1	3772	3772		21.702	0	1	37307000	+		43404	33121	29997	30048	48911	48911					0.10160464770854105
LLLGLGAPP	9	Unmodified	_LLLGLGAPP_					0	0	0			REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7747802734375	2	425.773471	849.53239	-0.20506	-8.731E-05	3.2791	0.0013961	3.074	0.0013088	425.77482073258034	42.256	0.99166	42.024	41.733	42.725	-0.23186					102	26	5	0	0	0	0.99355	1	3762	3762		21.702	0	1	38059000	+		43405	33121	29997	30048	48912	48912					0.10160464770854105
LLLGLGAPP	9	Unmodified	_LLLGLGAPP_					0	0	0			REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.77490234375	2	425.773471	849.53239	0.11223	4.7786E-05	2.9026	0.0012358	3.0148	0.0012836	425.7746512667468	42.244	1.0604	42.013	41.688	42.749	-0.2303					107	28	5	0	0	0	0.80342	2	3765	3765;3777		39.021	9.18	1	35838000	+		43406	33121	29997	30048	48913;48914	48913					0.10160464770854105
LLLGLGAPP	9	Unmodified	_LLLGLGAPP_					0	0	0			REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	REV__ENST00000469086.5_1_22:39136824-39138467:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.77508544921875	2	425.773471	849.53239	-0.44573	-0.00018978	3.8346	0.0016327	3.3889	0.0014429	425.77499342824996	43.306	1.947	43.08	42.753	44.7	-0.22597					119	52	5	0	0	0	0.93795	1	3952	3952		29.842	0	1	11576000	+		43407	33121	29997	30048	48915	48915					0.10160464770854105
LLLGLVASS	9	Unmodified	_LLLGLVASS_					0	0	0			REV__nc|ENSG00000099866|Q13477-4|MADCAM1	REV__nc|ENSG00000099866|Q13477-4|MADCAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.77508544921875	2	436.776211	871.537869	0.28535	0.00012463	-3.604	-0.0015741	-3.3186	-0.0014495	436.7745739222148	90.041	2.3328	90.025	89.541	91.873	-0.016708					171	55	5	0	0	0	0.75282	1	11314	11314		42.474	7.2737	1	37030000	+		43408	21016	29998	30049	48916	48916					0.09696143562666748
LLLGLVGGVC	10	Unmodified	_LLLGLVGGVC_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;ENST00000467972.5_1_7:100454518-100454833:+|nuORF	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28814697265625	2	472.285889	942.557224	0.48131	0.00022732	3.1588	0.0014918	3.6401	0.0017192	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.0812	1	11783	11783		35.201	1.6851	1	42478000			43409	5910	29999	30050	48917	48917					0.08364776581925071
LLLGLVGGVC	10	Unmodified	_LLLGLVGGVC_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;ENST00000467972.5_1_7:100454518-100454833:+|nuORF	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2879943847656	2	472.285889	942.557224	-0.32971	-0.00015572	3.8668	0.0018262	3.537	0.0016705	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	1.0812	2	11709	11709;11758		35.201	8.4046	1	42351000			43410	5910	29999	30050	48918;48919	48918					0.08364776581925071
LLLGLWRG	8	Unmodified	_LLLGLWRG_					0	0	0			REV__nc|ENSG00000157510|Q8TED9-2|AFAP1L1	REV__nc|ENSG00000157510|Q8TED9-2|AFAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.27880859375	2	464.292362	926.570172	0.62766	0.00029142	3.0812	0.0014306	3.7089	0.001722	464.2933212314	51.679	0.44064	51.495	51.374	51.815	-0.18404					20	11	2	0	0	0	0.027866	1	5362	5362		12.959	0	1	175180	+		43411	25135	30000	30051	48920	48920					0.10394975756321401
LLLGNWKRIIS	11	Unmodified	_LLLGNWKRIIS_					0	0	0			REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.27301025390625	3	438.27484	1311.80269	-0.053208	-2.332E-05	-3.599	-0.0015773	-3.6522	-0.0016007	438.2732444854445	105.5	1.0452	105.38	104.85	105.9	-0.12444					64	30	4	0	0	0	1.0408	1	13149	13149		27.644	5.8635	1	717220	+		43412	37385	30001	30052	48921	48921					0.1592619303628453
LLLGNWKRIIS	11	Unmodified	_LLLGNWKRIIS_					0	0	0			REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	438.27484	1311.80269	0.23005	0.00010082	-3.7919	-0.0016619	-3.5618	-0.0015611	438.2732450806234	105.36	0.5953	105.36	105.05	105.65	0.00097656	-0.034875	8.3907E-05	NaN	27.644	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549590	+		43413	37385	30001	30052							0.1592619303628453
LLLGNWKRIIS	11	Unmodified	_LLLGNWKRIIS_					0	0	0			REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	438.27484	1311.80269	0.39344	0.00017244	-3.8732	-0.0016975	-3.4798	-0.0015251	438.2731945560894	105.48	0.57191	105.48	105.22	105.79	0.00014496	0.083539	-2.3055E-05	NaN	27.644	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729400	+		43414	37385	30001	30052							0.1592619303628453
LLLGNWKRIIS	11	Unmodified	_LLLGNWKRIIS_					0	0	0			REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	438.27484	1311.80269	-0.8587	-0.00037635	-2.7961	-0.0012255	-3.6548	-0.0016018	438.2735583424749	105.5	0.45616	105.37	105.15	105.61	-0.13099	-0.028075	0.0013931	NaN	27.644	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455050	+		43415	37385	30001	30052							0.1592619303628453
LLLGNWKRIIS	11	Unmodified	_LLLGNWKRIIS_					0	0	0			REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	REV__PLSCR4|p.S284L|1|0.17|ENSG00000114698|chr3:146195218-146195218|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	438.27484	1311.80269	0.9219	0.00040405	-4.8194	-0.0021122	-3.8975	-0.0017082	438.2727294872352	105.62	0.37601	105.45	105.3	105.67	-0.16132	0.059937	-0.0012671	NaN	27.644	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365830	+		43416	37385	30001	30052							0.1592619303628453
LLLGPEIT	8	Unmodified	_LLLGPEIT_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2619934082031	2	428.262936	854.51132	-0.84173	-0.00036048	-1.8293	-0.00078343	-2.671	-0.0011439	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0017	2	11434	11360;11434		37.028	6.8048	1	86056000	+		43417	20632	30002	30053	48922;48923	48923					0.0782445467133357
LLLGPEIT	8	Unmodified	_LLLGPEIT_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2618713378906	2	428.262936	854.51132	-0.55429	-0.00023738	-2.187	-0.0009366	-2.7413	-0.001174	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0472	2	10999	10999;11059		29.842	1.4582	1	83817000	+		43418	20632	30002	30053	48924;48925	48924					0.0782445467133357
LLLGPEIT	8	Unmodified	_LLLGPEIT_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.262451171875	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	0.98906	2	11037	11037;11073		39.021	7.4426	1	68116000	+		43419	20632	30002	30053	48926;48927	48926					0.0782445467133357
LLLGPICLPL	10	Unmodified	_LLLGPICLPL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.3146362304688	2	526.332839	1050.65112	-0.15853	-8.3437E-05	1.9256	0.0010135	1.767	0.00093005	526.3336071532976	74.894	0.24596	74.631	74.57	74.816	-0.26326					8	5	2	0	0	0	0.03519	1	8851	8851		26.796	5.8492	1	33446			43420	9997	30003	30054	48928	48928					0.12782495684200512
LLLGQPLP	8	Unmodified	_LLLGQPLP_					0	0	0			REV__ENSG00000139914|ENST00000267426|FITM1	REV__ENSG00000139914|ENST00000267426|FITM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7749328613281	2	425.773471	849.53239	-0.086541	-3.6847E-05	3.0095	0.0012814	2.923	0.0012445	425.7747981740325	42.002	1.1717	42.002	41.579	42.75	0					125	33	6	0	0	0	1.0472	1	3811	3811		29.842	0	1	65572000	+		43421	23972	30004	30055	48929	48929					0.10160464770854105
LLLGQPLP	8	Unmodified	_LLLGQPLP_					0	0	0			REV__ENSG00000139914|ENST00000267426|FITM1	REV__ENSG00000139914|ENST00000267426|FITM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.77508544921875	2	425.773471	849.53239	-0.21096	-8.9821E-05	3.6783	0.0015661	3.4673	0.0014763	425.77492564602755	43.279	1.886	43.042	42.719	44.605	-0.23737					116	50	5	0	0	0	1.0472	1	3953	3953		29.842	0	1	10379000	+		43422	23972	30004	30055	48930	48930					0.10160464770854105
LLLGTELP	8	Unmodified	_LLLGTELP_					0	0	0		ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2615966796875	2	428.262936	854.51132	-0.55429	-0.00023738	-2.187	-0.0009366	-2.7413	-0.001174	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0574	1	10987	10987		21.702	0	1	83817000			43423	13915	30005	30056	48931	48931					0.0782445467133357
LLLGTELP	8	Unmodified	_LLLGTELP_					0	0	0		ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.26141357421875	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0133	1	11148	11148		35.201	0	1	68116000			43424	13915	30005	30056	48932	48932					0.0782445467133357
LLLGVYNL	8	Unmodified	_LLLGVYNL_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.77740478515625	2	452.778754	903.542954	0.52394	0.00023723	-3.4788	-0.0015751	-2.9548	-0.0013379	452.7770744736323	41.103	1.1868	41.103	40.8	41.987	0					83	33	4	0	0	0	0.82104	1	3687	3687		57.453	2.688	1	4481200			43425	3935	30006	30057	48933	48933					0.0873244742526822
LLLGVYNL	8	Unmodified	_LLLGVYNL_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.7772521972656	2	452.778754	903.542954	0.40021	0.00018121	-3.3414	-0.0015129	-2.9412	-0.0013317	452.7771356402899	41.252	1.1611	41.129	40.833	41.994	-0.12317					75	32	4	0	0	0	0.82104	2	3682	3682;3692		57.453	8.2419	1	4061900			43426	3935	30006	30057	48934;48935	48934					0.0873244742526822
LLLHACAHNP	10	Unmodified	_LLLHACAHNP_					0	0	0		ENST00000564400.5_1_16:58750074-58768228:-|nuORF;nc|ENSG00000125166|P00505-2|GOT2;ENSG00000125166|ENST00000245206|GOT2	ENST00000564400.5_1_16:58750074-58768228:-|nuORF	ENST00000564400.5_1_16:58750074-58768228:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8236083984375	2	544.787118	1087.55968	-0.96779	-0.00052724	-3.1384	-0.0017098	-4.1062	-0.002237	545.2872038245605	66.989	0.24706	66.989	66.841	67.088	0					8	5	2	0	0	0	0.03519	1	7984	7984		11.511	2.8173	1	120450			43427	4089	30007	30058	48936	48936					0.01940625039560473
LLLHCGVPL	9	Unmodified	_LLLHCGVPL_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.78424072265625	2	482.786056	963.557558	0.40478	0.00019542	-3.8083	-0.0018386	-3.4035	-0.0016432	482.7840246086426	73.006	0.88227	72.725	72.385	73.267	-0.28124					65	21	4	0	0	0	0.80342	1	8847	8847		39.021	0	1	1879100			43428	10221	30008	30059	48937	48937					0.07432196301772365
LLLHIRQE	8	Unmodified	_LLLHIRQE_					0	0	0			REV__ENSG00000171487|ENST00000390649|NLRP5	REV__ENSG00000171487|ENST00000390649|NLRP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.287109375	2	511.311284	1020.60801	0.69203	0.00035384	2.9299	0.0014981	3.6219	0.0018519	511.31292627106325	58.845	0.18381	58.658	58.538	58.721	-0.18705					6	4	2	0	0	0	0.027866	1	6652	6652		47.916	7.343	1	61901	+		43429	26570	30009	30060	48938	48938					0.09853441951145214
LLLHMLIFA	9	Unmodified	_LLLHMLIFA_					0	0	0			REV__ENST00000463792.5_1_2:220099420-220100035:+|nuORF	REV__ENST00000463792.5_1_2:220099420-220100035:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.755859375	2	535.825181	1069.63581	-0.70148	-0.00037587	1.0069	0.0005395	0.30538	0.00016363	535.8259128744664	76.629	0.25887	76.46	76.266	76.525	-0.16854					8	5	2	0	0	0	0.024389	1	9083	9083		49.211	15.718	1	80476	+		43430	32947	30010	30061	48939	48939					0.10377628886999446
LLLHPQLVS	9	Unmodified	_LLLHPQLVS_					0	0	0			REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF	REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.32421875	2	510.316035	1018.61752	-0.76836	-0.00039211	0.7863	0.00040126	0.017937	9.1536E-06	510.31621034632167	79.289	0.49725	79.116	78.944	79.441	-0.17226					20	11	3	0	0	0	0.024354	1	9780	9780		30.504	0	1	174780	+		43431	34745	30011	30062	48940	48940					0.10895210236674302
LLLHPSPPCV	10	Unmodified	_LLLHPSPPCV_					0	0	0			REV__ENST00000593281.1_1_19:11541422-11545627:-|nuORF	REV__ENST00000593281.1_1_19:11541422-11545627:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.327392578125	2	538.30207	1074.58959	-0.73419	-0.00039522	4.3235	0.0023273	3.5893	0.0019321	538.3038117267048	99.861	0.15694	99.69	99.634	99.791	-0.17088					6	4	2	0	0	0	0.03519	1	12378	12378		38.806	6.8513	1	96014	+		43432	35763	30012	30063	48941	48941					0.055275639849242
LLLHRQLY	8	Unmodified	_LLLHRQLY_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.3172607421875	2	528.321651	1054.62875	-0.70049	-0.00037008	-3.0242	-0.0015978	-3.7247	-0.0019678	528.3196994874484	35.668	0.49803	35.453	35.176	35.674	-0.21555					29	12	3	0	0	0	1.0133	1	2725	2725		35.201	6.9464	1	1369700			43433	8901;16105	30013	30064	48942	48942					0.10362032330795046
LLLHSSIQV	9	Unmodified	_LLLHSSIQV_					0	0	0			REV__ENST00000311117.7_1_7:104742426-104742498:+|nuORF	REV__ENST00000311117.7_1_7:104742426-104742498:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8248596191406	2	505.305667	1008.59678	-0.22568	-0.00011404	-1.3699	-0.00069223	-1.5956	-0.00080627	505.3038867284197	79.56	0.25163	79.578	79.516	79.768	0.018677					11	5	3	0	0	0	0.024427	1	9814	9814		51.335	3.6781	1	53608	+		43434	30197	30014	30065	48943	48943					0.09282619857003738
LLLIALFMV	9	Unmodified	_LLLIALFMV_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7479248046875	2	516.829932	1031.64531	0.067539	3.4906E-05	3.57	0.0018451	3.6375	0.00188	516.8316086326122	63.97	0.69729	63.778	63.418	64.115	-0.19243					28	17	2	0	0	0	0.024389	1	7206	7206		21.702	0	1	103190	+		43435	22048	30015	30066	48944	48944					0.13075397172519843
LLLIEAFPE	9	Unmodified	_LLLIEAFPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7703247070312	2	522.802426	1043.5903	-0.47816	-0.00024998	-3.3643	-0.0017588	-3.8424	-0.0020088	522.8004912824688	73.275	0.80608	72.998	72.756	73.562	-0.2769					33	19	3	0	0	0	0.024436	1	8567	8567		38.806	0	1	671100			43436	6479;18400	30016	30067	48945	48945					0.07024681905613761
LLLIEAFPE	9	Unmodified	_LLLIEAFPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.802426	1043.5903	-1.0564	-0.00055227	-2.6161	-0.0013677	-3.6724	-0.00192	522.8010053014609	73.014	0.70115	73.014	72.698	73.399	0	0.01427	0.00088926	NaN	29.15	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1733900			43437	6479;18400	30016	30067							0.07024681905613761
LLLIEAFPE	9	Unmodified	_LLLIEAFPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.802426	1043.5903	-0.28753	-0.00015032	-3.4394	-0.0017981	-3.727	-0.0019485	522.8006219349436	73.342	0.77933	73.07	72.719	73.499	-0.27126	0.070733	2.8342E-05	NaN	29.15	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1877600			43438	6479;18400	30016	30067							0.07024681905613761
LLLIEAFPE	9	Unmodified	_LLLIEAFPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.802426	1043.5903	-0.12241	-6.3995E-05	-3.6782	-0.0019229	-3.8006	-0.0019869	522.800479727714	73.038	0.74673	73.047	72.693	73.44	0.0096512	0.047459	-0.00022127	NaN	29.15	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1781200			43439	6479;18400	30016	30067							0.07024681905613761
LLLIEAFPE	9	Unmodified	_LLLIEAFPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.802426	1043.5903	-0.23995	-0.00012544	-3.7222	-0.001946	-3.9621	-0.0020714	522.8003360088215	73.265	0.75845	73.001	72.767	73.526	-0.26479	0.00097396	-0.00026728	NaN	29.15	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	943310			43440	6479;18400	30016	30067							0.07024681905613761
LLLIEAFPE	9	Unmodified	_LLLIEAFPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.802426	1043.5903	-0.29676	-0.00015514	-3.7321	-0.0019511	-4.0288	-0.0021063	522.8003977161941	73.064	0.80396	72.868	72.626	73.43	-0.19643	-0.13205	-0.00027763	NaN	29.15	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780840			43441	6479;18400	30016	30067							0.07024681905613761
LLLIESRCS	9	Unmodified	_LLLIESRCS_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;UBE3C-PTPRN2|1|fusion	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8271484375	2	517.289159	1032.56377	-0.30715	-0.00015888	3.2625	0.0016877	2.9554	0.0015288	517.2902746805966	35.237	0.87123	35.025	34.601	35.472	-0.21246					65	21	5	0	0	0	0.024405	1	2626	2626		27.882	0	1	469110			43442	856	30017	30068	48946	48946					0.04878669742629427
LLLIKKVT	8	Unmodified	_LLLIKKVT_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1;nc|ENSG00000170959|M0R2J8-3|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2790222167969	2	464.333696	926.652839	0.0034387	1.5967E-06	-0.27802	-0.00012909	-0.27458	-0.0001275	464.3333547612085	52.1	0.5275	51.916	51.705	52.233	-0.18405					32	13	3	0	0	0	0.027866	1	5374	5374		57.811	0	1	658470			43443	8100	30018	30069	48947	48947					0.18657872764458716
LLLILRGIGQF	11	Unmodified	_LLLILRGIGQF_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.8986206054688	2	621.900266	1241.78598	-0.5035	-0.00031313	2.0217	0.0012573	1.5182	0.00094415	621.9012393385995	106.03	0.34787	106.03	105.83	106.18	0.00014496					28	12	3	0	0	0	1.0483	1	13547	13547		25.574	4.6271	1	559380	+		43444	25147	30019	30070	48948	48948					0.1747569215031035
LLLILRGIGQF	11	Unmodified	_LLLILRGIGQF_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	621.900266	1241.78598	-0.5035	-0.00031313	2.0217	0.0012573	1.5182	0.00094415	621.9012393385995	106.03	0.34787	106.03	105.83	106.18	0.00014496	0.076448	0.00022908	NaN	25.574	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559380	+		43445	25147	30019	30070							0.1747569215031035
LLLILRGIGQF	11	Unmodified	_LLLILRGIGQF_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	621.900266	1241.78598	0.57434	0.00035718	0.8326	0.0005178	1.4069	0.00087498	621.9007683682157	106.12	0.1525	105.96	105.87	106.03	-0.16133	0.009252	-0.0012499	NaN	25.574	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70085	+		43446	25147	30019	30070							0.1747569215031035
LLLIMITL	8	Unmodified	_LLLIMITL_					0	0	0			REV__ENST00000454859.7_1_6:127609987-127610047:-|nuORF	REV__ENST00000454859.7_1_6:127609987-127610047:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.286865234375	2	465.308832	928.603112	0.044703	2.0801E-05	2.3669	0.0011013	2.4116	0.0011221	465.3098663925575	75.546	0.15533	75.37	75.312	75.468	-0.17548					8	3	3	0	0	0	0.027866	1	8942	8942		29.842	0	1	96702	+		43447	32773	30020	30071	48949	48949					0.1359542176415971
LLLIMTLVN	9	Unmodified	_LLLIMTLVN_					0	0	0		ENST00000396842.6_1_3:15473651-15473720:+|nuORF	ENST00000396842.6_1_3:15473651-15473720:+|nuORF	ENST00000396842.6_1_3:15473651-15473720:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2963256835938	2	515.322471	1028.63039	-0.25806	-0.00013299	-3.9226	-0.0020214	-4.1807	-0.0021544	515.3211277892741	73.441	0.15573	73.251	73.16	73.316	-0.19026					5	3	2	0	0	0	0.024477	1	8615	8615		20.947	0	1	36880			43448	13566	30021	30072	48950	48950					0.1172190530453463
LLLIQDKT	8	Unmodified	_LLLIQDKT_					0	0	0			REV__ENST00000587329.1_1_19:10909095-10913035:+|nuORF	REV__ENST00000587329.1_1_19:10909095-10913035:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2944641113281	2	472.294768	942.574983	0.22094	0.00010435	-0.053041	-2.5051E-05	0.1679	7.9296E-05	472.2944862395558	32.299	0.51411	32.063	31.824	32.339	-0.23666					29	11	4	0	0	0	0.53523	1	2214	2214		82.305	0	1	834430	+		43449	19697	30022	30073	48951	48951					0.10139815108414041
LLLIQERWKRA	11	Unmodified	_LLLIQERWKRA_					0	0	0		nc|ENSG00000148572|Q96F24-2|NRBF2;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2;ENST00000520874.1_1_8:108995475-108995910:+|nuORF	nc|ENSG00000148572|Q96F24-2|NRBF2	nc|ENSG00000148572|Q96F24-2|NRBF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7632751464844	3	475.961144	1424.8616	0.3137	0.00014931	-0.31505	-0.00014995	-0.0013465	-6.4089E-07	475.96096438351964	67.343	1.7893	67.054	66.581	68.371	-0.28835					97	44	3	0	0	0	0.024873	1	7946	7946		9.6461	3.6451	1	316270			43450	6040	30023	30074	48952	48952					0.1661666933057404
LLLIQFNN	8	Unmodified	_LLLIQFNN_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.7645568847656	2	487.78711	973.559667	-0.21827	-0.00010647	-0.64091	-0.00031263	-0.85918	-0.0004191	487.7880067324543	43.137	0.18884	42.9	42.8	42.989	-0.23736					5	4	2	0	0	0	0.027866	1	3925	3925		35.201	12.158	1	38984	+		43451	27906	30024	30075	48953	48953					0.0718294831123103
LLLIQFNN	8	Unmodified	_LLLIQFNN_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.78711	973.559667	-0.28388	-0.00013847	-2.5858	-0.0012613	-2.8697	-0.0013998	487.7858724087709	43.103	0.28939	42.963	42.885	43.174	-0.13929	-0.0078826	0.00023188	NaN	26.796	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101720	+		43452	27906	30024	30075							0.0718294831123103
LLLIQFNN	8	Unmodified	_LLLIQFNN_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.78711	973.559667	0.028868	1.4081E-05	-3.7851	-0.0018463	-3.7562	-0.0018322	487.785315358819	43.02	0.36494	43.051	42.902	43.267	0.030823	0.079546	-0.00093812	NaN	26.796	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73080	+		43453	27906	30024	30075							0.0718294831123103
LLLIRFIFLV	10	Unmodified	_LLLIRFIFLV_					0	0	0			REV__ENSG00000152661|ENST00000282561|GJA1	REV__ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	623.914794921875	2	623.917927	1245.8213	0.93974	0.00058632	-3.3451	-0.0020871	-2.4054	-0.0015008	623.9157293580129	107.7	0.30437	107.7	107.55	107.85	0					23	15	2	0	0	0	1.1031	1	13830	13830		12.207	0	1	2190900	+		43454	24857	30025	30076	48954	48954					0.20822354678102784
LLLKAEKE	8	Unmodified	_LLLKAEKE_					0	0	0		nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2945556640625	2	472.294768	942.574983	0.45697	0.00021582	-0.26862	-0.00012687	0.18835	8.8955E-05	472.29430970932697	32.301	0.561	32.108	31.856	32.417	-0.19261					27	12	3	0	0	0	0.46709	1	2208	2208		88.643	0	1	743410			43455	18636	30026	30077	48955	48955					0.1013981510842541
LLLKAEKE	8	Unmodified	_LLLKAEKE_					0	0	0		nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	472.294768	942.574983	0.22094	0.00010435	-0.053041	-2.5051E-05	0.1679	7.9296E-05	472.2944862395558	32.299	0.51411	32.063	31.824	32.339	-0.23666	-0.041663	-3.4776E-05	NaN	88.643	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834430			43456	18636	30026	30077							0.1013981510842541
LLLKAEKE	8	Unmodified	_LLLKAEKE_					0	0	0		nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.294768	942.574983	-0.50498	-0.0002385	0.40814	0.00019276	-0.096836	-4.5735E-05	472.29465691105156	32.3	0.58273	32.142	31.861	32.444	-0.15772	0.037959	0.00040085	NaN	88.643	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	878430			43457	18636	30026	30077							0.1013981510842541
LLLKAEQLSV	10	Unmodified	_LLLKAEQLSV_					0	0	0			REV__ENST00000495790.1_1_10:32581422-32635732:-|nuORF	REV__ENST00000495790.1_1_10:32581422-32635732:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.3182373046875	2	557.347532	1112.68051	0.40507	0.00022576	3.0813	0.0017174	3.4864	0.0019431	557.3500675899418	69.966	0.12067	69.674	69.593	69.714	-0.29291					4	2	2	0	0	0	0.03519	1	8405	8405		24.519	0	1	25174	+		43458	22543	30027	30078	48956	48956					0.1286773123401872
LLLKALVPLL	10	Unmodified	_LLLKALVPLL_					0	0	0		ENST00000508874.1_1_5:43587648-43587864:-|nuORF;ENSG00000123505|ENST00000368885|AMD1	ENST00000508874.1_1_5:43587648-43587864:-|nuORF	ENST00000508874.1_1_5:43587648-43587864:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.8402099609375	2	546.891378	1091.7682	-0.14967	-8.1856E-05	0.25206	0.00013785	0.10239	5.5996E-05	546.8912999249281	99.557	0.2123	99.557	99.492	99.704	0					7	4	2	0	0	0	0.03519	1	12728	12728		12.207	0	1	41524			43459	3983	30028	30079	48957	48957					0.2259897689546051
LLLKDIKSG	9	Unmodified	_LLLKDIKSG_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000533733.5_1_11:108158320-108160529:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.8155517578125	2	493.815867	985.617182	-0.81805	-0.00040397	0.37671	0.00018602	-0.44134	-0.00021794	493.8159769780723	20.961	0.79062	20.748	20.475	21.266	-0.2128					44	15	4	0	0	0	0.20967	1	597	597		87.754	0	1	1563700			43460	6083	30029	30080	48958	48958					0.12379790516808953
LLLKEKLS	8	Unmodified	_LLLKEKLS_					0	0	0			REV__nc|ENSG00000087206|Q96RL1-3|UIMC1	REV__nc|ENSG00000087206|Q96RL1-3|UIMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.3128967285156	2	472.312961	942.611368	-0.65365	-0.00030873	-0.03528	-1.6663E-05	-0.68893	-0.00032539	472.3128665108423	44.907	0.94538	44.808	44.513	45.458	-0.099445					65	25	4	0	0	0	0.2917	2	4228	4207;4228		115.46	0	1	6715900	+		43461	20792	30030	30081	48959;48960	48960					0.13776692005137647
LLLKEKLS	8	Unmodified	_LLLKEKLS_					0	0	0			REV__nc|ENSG00000087206|Q96RL1-3|UIMC1	REV__nc|ENSG00000087206|Q96RL1-3|UIMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.3127136230469	2	472.312961	942.611368	-0.30105	-0.00014219	-0.32764	-0.00015475	-0.6287	-0.00029694	472.31270733512713	45.059	0.85072	44.806	44.508	45.359	-0.25252					63	22	5	0	0	0	0.21344	1	4239	4239		138.24	0	1	6277100	+		43462	20792	30030	30081	48961	48961					0.13776692005137647
LLLKEKTV	8	Unmodified	_LLLKEKTV_					0	0	0			REV__ENST00000376598.2_2_9:80863756-80866847:+|nuORF	REV__ENST00000376598.2_2_9:80863756-80866847:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.3121032714844	2	472.312961	942.611368	-0.72458	-0.00034223	0.016076	7.5931E-06	-0.70851	-0.00033464	472.3128743993293	45.024	0.82772	44.813	44.554	45.382	-0.21109					55	22	4	0	0	0	0.32162	1	4211	4211		108.09	5.3142	1	6372400	+		43463	31363	30031	30082	48962	48962					0.13776692005149016
LLLKKLLS	8	Unmodified	_LLLKKLLS_					0	0	0			REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.2794494628906	2	464.333696	926.652839	-1.835	-0.00085205	1.6086	0.00074692	-0.2264	-0.00010513	464.33425998054406	52.199	0.58608	51.93	51.691	52.277	-0.26903					31	15	3	0	0	0	0.027866	1	5393	5393		85.359	0	1	623770	+		43464	21819	30032	30083	48963	48963					0.18657872764481453
LLLKKMYL	8	Unmodified	_LLLKKMYL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.3273620605469	2	511.327556	1020.64056	0.48015	0.00024551	-1.3492	-0.00068987	-0.86903	-0.00044436	511.326731002724	96.077	1.1484	96.084	95.732	96.881	0.0065002					67	26	4	0	0	0	1.0574	1	12240	12240		14.664	0	1	1445900			43465	3443	30033	30084	48964	48964					0.13106513029777034
LLLKLNPSCQ	10	Unmodified	_LLLKLNPSCQ_					0	0	0			REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.8277587890625	2	564.825909	1127.63727	-0.69412	-0.00039206	3.7813	0.0021358	3.0872	0.0017437	564.8279462834419	34.034	0.7408	34.034	33.739	34.479	0					55	18	4	0	0	0	0.941	1	2516	2516		51.335	10.763	1	2845300	+		43466	32485	30034	30085	48965	48965					0.07855218185113699
LLLKLNPSCQ	10	Unmodified	_LLLKLNPSCQ_					0	0	0			REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8279418945312	2	564.825909	1127.63727	-0.48487	-0.00027387	3.5879	0.0020265	3.103	0.0017526	564.8278695407402	33.854	0.81385	33.85	33.561	34.375	-0.0045624					58	20	4	0	0	0	1.0271	1	2471	2471		42.396	5.237	1	2951200	+		43467	32485	30034	30085	48966	48966					0.07855218185113699
LLLKPAMTG	9	Unmodified	_LLLKPAMTG_					0	0	0			REV__ENST00000553440.1_1_15:27216658-27271989:+|nuORF	REV__ENST00000553440.1_1_15:27216658-27271989:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2879333496094	2	472.285889	942.557224	-0.32971	-0.00015572	3.8668	0.0018262	3.537	0.0016705	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.92825	1	11722	11722		30.504	2.2494	1	42351000	+		43468	34971	30035	30086	48967	48967					0.08364776581925071
LLLKRTPC	8	Unmodified	_LLLKRTPC_					0	0	0			REV__ENST00000596530.1_3_19:20718870-20718945:-|nuORF	REV__ENST00000596530.1_3_19:20718870-20718945:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3128967285156	2	472.291505	942.568457	-0.63803	-0.00030134	-2.8439	-0.0013432	-3.4819	-0.0016445	472.2898844896722	44.962	1.1533	44.863	44.001	45.154	-0.099445					51	30	2	0	0	0	0.027866	1	4228	4228		106.42	43.437	1	169550	+		43469	35795	30036	30087	48968	48968					0.09487598676048492
LLLKRTPC	8	Unmodified	_LLLKRTPC_					0	0	0			REV__ENST00000596530.1_3_19:20718870-20718945:-|nuORF	REV__ENST00000596530.1_3_19:20718870-20718945:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.3127136230469	2	472.291505	942.568457	-0.51908	-0.00024516	-2.9393	-0.0013882	-3.4584	-0.0016334	472.28981209295097	44.687	1.1923	44.442	43.94	45.132	-0.2444					51	31	2	0	0	0	0.027866	1	4239	4239		128.86	36.67	1	181330	+		43470	35795	30036	30087	48969	48969					0.09487598676048492
LLLKRTPC	8	Unmodified	_LLLKRTPC_					0	0	0			REV__ENST00000596530.1_3_19:20718870-20718945:-|nuORF	REV__ENST00000596530.1_3_19:20718870-20718945:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.31256103515625	2	472.291505	942.568457	-0.98429	-0.00046487	-2.6491	-0.0012512	-3.6334	-0.001716	472.29001815120466	44.643	1.2405	44.432	43.944	45.185	-0.21109					52	33	2	0	0	0	0.027866	1	4233	4233		115.46	33.154	1	158360	+		43471	35795	30036	30087	48970	48970					0.09487598676048492
LLLKSAELF	9	Unmodified	_LLLKSAELF_					0	0	0			REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7722778320312	2	517.318243	1032.62193	0.52743	0.00027285	3.1781	0.0016441	3.7055	0.0019169	517.319900108384	71.265	1.874	71.059	70.615	72.489	-0.20613					58	44	2	0	0	0	0.023596	1	8470	8470		44.117	0	1	222930	+		43472	24750	30037	30088	48971	48971					0.10692674659549084
LLLLAAMLL	9	Unmodified	_LLLLAAMLL_					0	0	0		ENST00000489214.5_1_2:85921541-85921898:+|nuORF;ENST00000482900.5_1_2:85921541-85923236:+|nuORF;ENSG00000115523|ENST00000263863|GNLY	ENST00000489214.5_1_2:85921541-85921898:+|nuORF	ENST00000489214.5_1_2:85921541-85921898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2483825683594	2	485.822107	969.629661	-0.24699	-0.00011999	3.8183	0.001855	3.5713	0.001735	485.82390638450926	26.318	0.45094	26.15	25.928	26.379	-0.16816					18	12	2	0	0	0	0.024541	1	1320	1320		14.664	4.4793	1	139680			43473	3458	30038	30089	48972	48972					0.14363110655483524
LLLLAAMLL	9	Unmodified	_LLLLAAMLL_					0	0	0		ENST00000489214.5_1_2:85921541-85921898:+|nuORF;ENST00000482900.5_1_2:85921541-85923236:+|nuORF;ENSG00000115523|ENST00000263863|GNLY	ENST00000489214.5_1_2:85921541-85921898:+|nuORF	ENST00000489214.5_1_2:85921541-85921898:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.822107	969.629661	-0.73407	-0.00035663	3.9889	0.0019379	3.2548	0.0015813	485.82402211857016	26.547	0.33856	26.311	26.197	26.535	-0.23603	0.019716	6.6066E-05	NaN	8.8223	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115450			43474	3458	30038	30089							0.14363110655483524
LLLLAAMLL	9	Unmodified	_LLLLAAMLL_					0	0	0		ENST00000489214.5_1_2:85921541-85921898:+|nuORF;ENST00000482900.5_1_2:85921541-85923236:+|nuORF;ENSG00000115523|ENST00000263863|GNLY	ENST00000489214.5_1_2:85921541-85921898:+|nuORF	ENST00000489214.5_1_2:85921541-85921898:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.822107	969.629661	-0.54147	-0.00026306	3.9428	0.0019155	3.4013	0.0016524	485.8238519784009	26.576	0.42354	26.413	26.199	26.622	-0.16331	0.12162	2.1257E-05	NaN	8.8223	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122170			43475	3458	30038	30089							0.14363110655483524
LLLLAHIIAL	10	Unmodified	_LLLLAHIIAL_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000521571.6_1_11:61607769-61608033:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.281982421875	2	545.373352	1088.73215	0.31931	0.00017414	-1.8595	-0.0010141	-1.5402	-0.00083997	545.3721425374658	50.953	0.18524	50.841	50.749	50.934	-0.11163					9	4	3	0	0	0	0.03519	1	5218	5218		12.959	0	1	310450			43476	4832	30039	30090	48973	48973					0.1913351971859356
LLLLAPPLW	9	Unmodified	_LLLLAPPLW_					0	0	0			REV__ENSG00000178789|ENST00000392621|CD300LB	REV__ENSG00000178789|ENST00000392621|CD300LB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2522583007812	2	518.333696	1034.65284	-0.0078931	-4.0913E-06	-3.8684	-0.0020051	-3.8763	-0.0020092	518.8333202556512	74.969	0.66237	74.694	74.479	75.141	-0.27573					19	15	2	0	0	0	0.024475	1	8878	8878		39.021	15.979	1	91525	+		43477	27207	30040	30091	48974	48974					0.13689872764462052
LLLLCLGV	8	Unmodified	_LLLLCLGV_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.21771240234375	2	422.27225	842.529947	-0.15104	-6.3781E-05	4.0868	0.0017257	3.9357	0.0016619	422.27398101208246	35.666	0.38461	35.453	35.233	35.618	-0.21246					15	9	2	0	0	0	0.027866	1	2743	2743		33.493	0	1	185840			43478	8440	30041	30092	48975	48975					0.10238293041538782
LLLLCLGV	8	Unmodified	_LLLLCLGV_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	422.27225	842.529947	-0.4082	-0.00017237	5.0521	0.0021334	4.6439	0.001961	422.274209498138	35.692	0.35113	35.477	35.255	35.606	-0.21555	0.043636	0.00037075	NaN	33.493	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177060			43479	8440	30041	30092							0.10238293041538782
LLLLCLGV	8	Unmodified	_LLLLCLGV_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	422.27225	842.529947	-0.088767	-3.7484E-05	3.8844	0.0016403	3.7957	0.0016028	422.27387492825	35.556	0.30727	35.369	35.18	35.488	-0.18675	-0.064097	-0.0006154	NaN	33.493	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135450			43480	8440	30041	30092							0.10238293041538782
LLLLCPSR	8	Unmodified	_LLLLCPSR_					0	0	0		nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000152784|ENST00000415738|PRDM8	nc|ENSG00000152784|Q9NQV8-2|PRDM8	nc|ENSG00000152784|Q9NQV8-2|PRDM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7976379394531	2	457.778231	913.541908	-0.12068	-5.5245E-05	-2.6377	-0.0012075	-2.7584	-0.0012627	457.7767297325548	62.603	2.6338	62.603	62.275	64.909	0					156	72	3	0	0	0	0.027866	1	7653	7653		42.474	18.272	1	3066800			43481	6299	30042	30093	48976	48976					0.08167909784731364
LLLLCPSR	8	Unmodified	_LLLLCPSR_					0	0	0		nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000152784|ENST00000415738|PRDM8	nc|ENSG00000152784|Q9NQV8-2|PRDM8	nc|ENSG00000152784|Q9NQV8-2|PRDM8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.778231	913.541908	0.59449	0.00027214	-3.6079	-0.0016516	-3.0134	-0.0013795	457.7763407623382	62.536	2.4246	62.598	62.272	64.697	0.062767	0.014071	-0.00055825	NaN	42.474	129	64	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2965400			43482	6299	30042	30093							0.08167909784731364
LLLLDKGG	8	Unmodified	_LLLLDKGG_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.7619323730469	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	1.0017	1	11113	11113		37.028	1.8278	1	53595000	+		43483	27572	30043	30094	48977	48977					0.09099874391199592
LLLLDKGG	8	Unmodified	_LLLLDKGG_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7620544433594	2	414.763104	827.511654	-0.33499	-0.00013894	-3.3986	-0.0014096	-3.7336	-0.0015486	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	1.0239	1	10766	10766		33.516	3.0119	1	36536000	+		43484	27572	30043	30094	48978	48978					0.09099874391199592
LLLLDKGG	8	Unmodified	_LLLLDKGG_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.761474609375	2	414.763104	827.511654	0.17372	7.2053E-05	-3.8235	-0.0015859	-3.6498	-0.0015138	414.76147745809476	87.954	2.2305	87.817	87.304	89.534	-0.13613					149	53	5	0	0	0	1.0017	1	10788	10788		37.028	1.4102	1	32442000	+		43485	27572	30043	30094	48979	48979					0.09099874391199592
LLLLEPGG	8	Unmodified	_LLLLEPGG_					0	0	0		ENST00000483330.1_1_7:43908587-43908701:-|nuORF	ENST00000483330.1_1_7:43908587-43908701:-|nuORF	ENST00000483330.1_1_7:43908587-43908701:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.248779296875	2	406.249829	810.485105	0.91381	0.00037124	-4.0137	-0.0016306	-3.0999	-0.0012593	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0472	1	10755	10755		29.842	4.3914	1	86727000			43486	15281	30044	30095	48980	48980					0.07228185499855044
LLLLFGGGSV	10	Unmodified	_LLLLFGGGSV_					0	0	0		ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2821350097656	2	488.29731	974.580068	-0.73218	-0.00035752	-1.2737	-0.00062193	-2.0059	-0.00097946	488.2966475867226	44.288	2.3374	44.069	42.604	44.941	-0.21938					72	62	2	0	0	0	0.03519	1	4021	4021		23.042	0	1	1435000			43487	15904	30045	30096	48981	48981					0.09176118971060987
LLLLFLPGW	9	Unmodified	_LLLLFLPGW_					0	0	0			REV__ENSG00000180739|ENST00000333430|S1PR5	REV__ENSG00000180739|ENST00000333430|S1PR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.8152465820312	2	536.333696	1070.65284	-0.872	-0.00046768	3.553	0.0019056	2.681	0.0014379	536.3360396409645	76.749	0.64917	76.521	76.041	76.691	-0.22844					19	15	2	0	0	0	0.024389	1	9450	9450		49.211	0	1	113110	+		43488	27358	30046	30097	48982	48982					0.12033872764482112
LLLLFLPGW	9	Unmodified	_LLLLFLPGW_					0	0	0			REV__ENSG00000180739|ENST00000333430|S1PR5	REV__ENSG00000180739|ENST00000333430|S1PR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.333696	1070.65284	-0.3926	-0.00021056	1.4001	0.0007509	1.0075	0.00054034	536.3350181362848	76.634	0.36932	76.634	76.35	76.719	0	0.021194	-0.00074392	NaN	49.211	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110690	+		43489	27358	30046	30097							0.12033872764482112
LLLLGAITLH	10	Unmodified	_LLLLGAITLH_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.82373046875	2	532.347335	1062.68012	-0.70771	-0.00037675	0.0090405	4.8127E-06	-0.69867	-0.00037194	532.3474053184677	52.242	0.49464	52.242	51.977	52.472	0					19	12	2	0	0	0	0.03519	1	5594	5594		31.955	7.7521	1	257540			43490	8460	30047	30098	48983	48983					0.1512835630483096
LLLLGAITLH	10	Unmodified	_LLLLGAITLH_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.82470703125	2	532.347335	1062.68012	-0.87137	-0.00046387	0.12023	6.4007E-05	-0.75114	-0.00039987	532.3464000223732	52.169	0.5815	52.261	51.823	52.404	0.091938					25	14	3	0	0	0	0.03519	1	5510	5510		31.955	8.9124	1	92740			43491	8460	30047	30098	48984	48984					0.1512835630483096
LLLLGAITLH	10	Unmodified	_LLLLGAITLH_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.347335	1062.68012	-0.74944	-0.00039896	-0.50963	-0.0002713	-1.2591	-0.00067026	532.3468297105435	52.137	0.29366	52.018	51.833	52.126	-0.11875	-0.15857	-0.00016804	NaN	24.203	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169920			43492	8460	30047	30098							0.1512835630483096
LLLLGAITLH	10	Unmodified	_LLLLGAITLH_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.347335	1062.68012	-1.7083	-0.0009094	-1.3151	-0.00070011	-3.0234	-0.0016095	532.3467591227069	52.463	0.33322	52.194	51.944	52.277	-0.26903	0.017058	-0.0010257	NaN	24.203	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136350			43493	8460	30047	30098							0.1512835630483096
LLLLGAITLH	10	Unmodified	_LLLLGAITLH_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.347335	1062.68012	-0.37969	-0.00020213	-2.3414	-0.0012464	-2.721	-0.0014485	532.345574233752	52.34	0.31039	52.156	51.963	52.273	-0.18404	-0.020847	-0.0021183	NaN	24.203	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135070			43494	8460	30047	30098							0.1512835630483096
LLLLGGIVM	9	Unmodified	_LLLLGGIVM_					0	0	0		ENSG00000250510|ENST00000311268|GPR162;ENST00000535220.1_1_12:6933100-6934099:+|nuORF	ENSG00000250510|ENST00000311268|GPR162	ENSG00000250510|ENST00000311268|GPR162	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.9007873535156	2	464.798632	927.582711	0.83615	0.00038864	3.9183	0.0018212	4.7545	0.0022099	464.8001905144048	20.591	0.5425	20.396	20.04	20.582	-0.19577					18	10	2	0	0	0	0.024541	1	543	543		21.702	0	1	41120			43495	10849	30048	30099	48985	48985					0.1160225110435249
LLLLGQPP	8	Unmodified	_LLLLGQPP_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7751159667969	2	425.773471	849.53239	0.17338	7.3822E-05	2.9368	0.0012504	3.1102	0.0013242	425.77467244094674	42.032	1.0796	41.909	41.603	42.683	-0.12299					99	28	5	0	0	0	1.0133	1	3748	3748		35.201	0	1	37307000			43496	5209	30049	30100	48986	48986					0.10160464770854105
LLLLIPAHS	9	Unmodified	_LLLLIPAHS_					0	0	0		nc|ENSG00000198121|Q92633-2|LPAR1	nc|ENSG00000198121|Q92633-2|LPAR1	nc|ENSG00000198121|Q92633-2|LPAR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2924499511719	2	488.813128	975.611703	-2.3042	-0.0011263	-1.8294	-0.00089423	-4.1336	-0.0020206	488.8145257788856	60.365	0.29151	60.444	60.356	60.647	0.078888					9	7	2	0	0	0	0.024497	1	6878	6878		20.482	0	1	42805			43497	18645	30050	30101	48987	48987					0.12292111724991628
LLLLISESMA	10	Unmodified	_LLLLISESMA_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF;TTC7B|p.S481Vfs*7|1|0.18|ENSG00000165914|chr14:90655011-90655012|-/GTAC|frameshift_variant;ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B	ENSG00000068724|ENST00000319190|TTC7A;TTC7B|p.S481Vfs*7|1|0.18|ENSG00000165914|chr14:90655011-90655012|-/GTAC|frameshift_variant	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3170776367188	2	545.314843	1088.61513	0.29621	0.00016153	2.9793	0.0016246	3.2755	0.0017862	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.1166	1	10734	10734		30.504	3.8107	1	4888900			43498	1388;7483	30051	30102	48988	48988					0.07436993716692086
LLLLISESMA	10	Unmodified	_LLLLISESMA_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF;TTC7B|p.S481Vfs*7|1|0.18|ENSG00000165914|chr14:90655011-90655012|-/GTAC|frameshift_variant;ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B	ENSG00000068724|ENST00000319190|TTC7A;TTC7B|p.S481Vfs*7|1|0.18|ENSG00000165914|chr14:90655011-90655012|-/GTAC|frameshift_variant	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3168334960938	2	545.314843	1088.61513	-0.4393	-0.00023956	3.6371	0.0019834	3.1978	0.0017438	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.1166	1	10532	10532		30.504	4.9296	1	5204600			43499	1388;7483	30051	30102	48989	48989					0.07436993716692086
LLLLLKGFR	9	Unmodified	_LLLLLKGFR_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3060913085938	2	536.865695	1071.71684	-0.8806	-0.00047277	1.5121	0.00081177	0.63146	0.00033901	536.8660963771636	47.878	0.2536	47.878	47.717	47.971	0					16	7	4	0	0	0	0.024541	1	4837	4837		26.796	18.565	1	420060	+		43500	21996	30052	30103	48990	48990					0.1838465292141791
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		ENSG00000215644|ENST00000400723|GCGR;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000182685|Q6PL45|BRICD5;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000182272|ENST00000329962|B4GALNT4;B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000125810|ENST00000246006|CD93;ENSG00000104972|ENST00000324602|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000087116|O95450-2|ADAMTS2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2;ENSG00000178473|ENST00000380433|UCN3;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;LRP8|p.R147Lfs*14|1|0.28|ENSG00000157193|chr1:53280643-53280644|-/A|frameshift_variant;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000182685|ENST00000328540|BRICD5;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;ENSG00000109255|ENST00000264218|NMU;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	REV__ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000243364|ENST00000368409|EFNA4;REV__nc|ENSG00000131042|Q8N423-3|LILRB2;REV__FAT1-MTNR1A|1|fusion;ENSG00000054654|ENST00000555002|SYNE2;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000204301|ENST00000375023|NOTCH4;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000054654|ENST00000555002|SYNE2;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000125810|ENST00000246006|CD93;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;ENSG00000088812|ENST00000262919|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000117899|ENST00000261758|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000155093|Q92932-2|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000083807|ENST00000263093|SLC27A5;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000109255|ENST00000264218|NMU;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000167680|ENST00000586582|SEMA6B;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000184985|ENST00000507866|SORCS2;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;REV__ENSG00000242866|ENST00000450892|STRC;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__LRP5-CLPB|1|fusion;REV__nc|ENSG00000213402|Q14761|PTPRCAP	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7373046875	2	462.348815	922.683077	0.029551	1.3663E-05	-8.5998E-05	-3.9761E-08	0.029465	1.3623E-05	462.34871782457327	72.627	0.49622	72.627	72.414	72.91	0					19	11	2	0	0	0	0.027866	1	8861	8861		24.504	0	1	124230		+	43501	1175;20191;26001;24738;20725;24992;247;3413;7543;6159;9145;19737;22169;689;1762;17640;17639;28649;17642;23497;6088;6926;36021;17641;19288;9391;10397;23731;22379;9401;22130;7909;4616;3864;3370;20822;1876;28588;9487;196;26178;19195;10326;26222;26327;9071;3663;19525;19755;18407;20722;24246;28984;22590;24064;25118;25944;27725;27428;28986;27716;37126;22844;7777;5470;23182;11090;18806;23508;9297;29249;4844;6882;7337;28810;27696;27492;27719;1276;28621;10808;26802;18241;4856;17926;13927;19065;12930;10803;9419;36330;487;8404;7751;7722;7666;6901;6452;5649;21787;27744	30053	30104	48991	48991					0.21864231429651682
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		ENSG00000215644|ENST00000400723|GCGR;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000182685|Q6PL45|BRICD5;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000182272|ENST00000329962|B4GALNT4;B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000125810|ENST00000246006|CD93;ENSG00000104972|ENST00000324602|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000087116|O95450-2|ADAMTS2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2;ENSG00000178473|ENST00000380433|UCN3;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;LRP8|p.R147Lfs*14|1|0.28|ENSG00000157193|chr1:53280643-53280644|-/A|frameshift_variant;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000182685|ENST00000328540|BRICD5;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;ENSG00000109255|ENST00000264218|NMU;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	REV__ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000243364|ENST00000368409|EFNA4;REV__nc|ENSG00000131042|Q8N423-3|LILRB2;REV__FAT1-MTNR1A|1|fusion;ENSG00000054654|ENST00000555002|SYNE2;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000204301|ENST00000375023|NOTCH4;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000054654|ENST00000555002|SYNE2;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000125810|ENST00000246006|CD93;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;ENSG00000088812|ENST00000262919|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000117899|ENST00000261758|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000155093|Q92932-2|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000083807|ENST00000263093|SLC27A5;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000109255|ENST00000264218|NMU;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000167680|ENST00000586582|SEMA6B;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000184985|ENST00000507866|SORCS2;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;REV__ENSG00000242866|ENST00000450892|STRC;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__LRP5-CLPB|1|fusion;REV__nc|ENSG00000213402|Q14761|PTPRCAP	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7373046875	2	462.348815	922.683077	0.45406	0.00020993	-0.29146	-0.00013476	0.1626	7.5177E-05	462.34855219345076	73.024	0.53421	72.743	72.465	72.999	-0.28124					20	12	2	0	0	0	0.027866	1	8877	8877		43.626	0	1	147960		+	43502	1175;20191;26001;24738;20725;24992;247;3413;7543;6159;9145;19737;22169;689;1762;17640;17639;28649;17642;23497;6088;6926;36021;17641;19288;9391;10397;23731;22379;9401;22130;7909;4616;3864;3370;20822;1876;28588;9487;196;26178;19195;10326;26222;26327;9071;3663;19525;19755;18407;20722;24246;28984;22590;24064;25118;25944;27725;27428;28986;27716;37126;22844;7777;5470;23182;11090;18806;23508;9297;29249;4844;6882;7337;28810;27696;27492;27719;1276;28621;10808;26802;18241;4856;17926;13927;19065;12930;10803;9419;36330;487;8404;7751;7722;7666;6901;6452;5649;21787;27744	30053	30104	48992	48992					0.21864231429651682
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		ENSG00000215644|ENST00000400723|GCGR;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000182685|Q6PL45|BRICD5;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000182272|ENST00000329962|B4GALNT4;B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000125810|ENST00000246006|CD93;ENSG00000104972|ENST00000324602|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000087116|O95450-2|ADAMTS2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2;ENSG00000178473|ENST00000380433|UCN3;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;LRP8|p.R147Lfs*14|1|0.28|ENSG00000157193|chr1:53280643-53280644|-/A|frameshift_variant;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000182685|ENST00000328540|BRICD5;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;ENSG00000109255|ENST00000264218|NMU;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	REV__ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000243364|ENST00000368409|EFNA4;REV__nc|ENSG00000131042|Q8N423-3|LILRB2;REV__FAT1-MTNR1A|1|fusion;ENSG00000054654|ENST00000555002|SYNE2;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000204301|ENST00000375023|NOTCH4;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000054654|ENST00000555002|SYNE2;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000125810|ENST00000246006|CD93;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;ENSG00000088812|ENST00000262919|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000117899|ENST00000261758|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000155093|Q92932-2|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000083807|ENST00000263093|SLC27A5;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000109255|ENST00000264218|NMU;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000167680|ENST00000586582|SEMA6B;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000184985|ENST00000507866|SORCS2;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;REV__ENSG00000242866|ENST00000450892|STRC;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__LRP5-CLPB|1|fusion;REV__nc|ENSG00000213402|Q14761|PTPRCAP	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7373962402344	2	462.348815	922.683077	0.93135	0.00043061	-0.80702	-0.00037312	0.12434	5.7488E-05	462.3483792254035	72.687	0.5381	72.696	72.489	73.027	0.0097046					17	12	2	0	0	0	0.027866	1	8795	8795		33.493	0	1	138210		+	43503	1175;20191;26001;24738;20725;24992;247;3413;7543;6159;9145;19737;22169;689;1762;17640;17639;28649;17642;23497;6088;6926;36021;17641;19288;9391;10397;23731;22379;9401;22130;7909;4616;3864;3370;20822;1876;28588;9487;196;26178;19195;10326;26222;26327;9071;3663;19525;19755;18407;20722;24246;28984;22590;24064;25118;25944;27725;27428;28986;27716;37126;22844;7777;5470;23182;11090;18806;23508;9297;29249;4844;6882;7337;28810;27696;27492;27719;1276;28621;10808;26802;18241;4856;17926;13927;19065;12930;10803;9419;36330;487;8404;7751;7722;7666;6901;6452;5649;21787;27744	30053	30104	48993	48993					0.21864231429651682
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		ENSG00000215644|ENST00000400723|GCGR;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000182685|Q6PL45|BRICD5;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000182272|ENST00000329962|B4GALNT4;B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000125810|ENST00000246006|CD93;ENSG00000104972|ENST00000324602|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000087116|O95450-2|ADAMTS2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2;ENSG00000178473|ENST00000380433|UCN3;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;LRP8|p.R147Lfs*14|1|0.28|ENSG00000157193|chr1:53280643-53280644|-/A|frameshift_variant;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000182685|ENST00000328540|BRICD5;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;ENSG00000109255|ENST00000264218|NMU;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	REV__ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000243364|ENST00000368409|EFNA4;REV__nc|ENSG00000131042|Q8N423-3|LILRB2;REV__FAT1-MTNR1A|1|fusion;ENSG00000054654|ENST00000555002|SYNE2;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000204301|ENST00000375023|NOTCH4;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000054654|ENST00000555002|SYNE2;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000125810|ENST00000246006|CD93;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;ENSG00000088812|ENST00000262919|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000117899|ENST00000261758|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000155093|Q92932-2|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000083807|ENST00000263093|SLC27A5;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000109255|ENST00000264218|NMU;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000167680|ENST00000586582|SEMA6B;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000184985|ENST00000507866|SORCS2;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;REV__ENSG00000242866|ENST00000450892|STRC;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__LRP5-CLPB|1|fusion;REV__nc|ENSG00000213402|Q14761|PTPRCAP	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.7373352050781	2	462.348815	922.683077	-0.22915	-0.00010595	0.26805	0.00012393	0.038898	1.7984E-05	462.34881701028553	73.011	0.50488	72.746	72.553	73.058	-0.26479					19	11	2	0	0	0	0.027866	1	8595	8595		1.619	0	1	152320		+	43504	1175;20191;26001;24738;20725;24992;247;3413;7543;6159;9145;19737;22169;689;1762;17640;17639;28649;17642;23497;6088;6926;36021;17641;19288;9391;10397;23731;22379;9401;22130;7909;4616;3864;3370;20822;1876;28588;9487;196;26178;19195;10326;26222;26327;9071;3663;19525;19755;18407;20722;24246;28984;22590;24064;25118;25944;27725;27428;28986;27716;37126;22844;7777;5470;23182;11090;18806;23508;9297;29249;4844;6882;7337;28810;27696;27492;27719;1276;28621;10808;26802;18241;4856;17926;13927;19065;12930;10803;9419;36330;487;8404;7751;7722;7666;6901;6452;5649;21787;27744	30053	30104	48994	48994					0.21864231429651682
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		ENSG00000215644|ENST00000400723|GCGR;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000182685|Q6PL45|BRICD5;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000182272|ENST00000329962|B4GALNT4;B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000125810|ENST00000246006|CD93;ENSG00000104972|ENST00000324602|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000087116|O95450-2|ADAMTS2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2;ENSG00000178473|ENST00000380433|UCN3;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;LRP8|p.R147Lfs*14|1|0.28|ENSG00000157193|chr1:53280643-53280644|-/A|frameshift_variant;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000182685|ENST00000328540|BRICD5;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;ENSG00000109255|ENST00000264218|NMU;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	REV__ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000243364|ENST00000368409|EFNA4;REV__nc|ENSG00000131042|Q8N423-3|LILRB2;REV__FAT1-MTNR1A|1|fusion;ENSG00000054654|ENST00000555002|SYNE2;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000204301|ENST00000375023|NOTCH4;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000054654|ENST00000555002|SYNE2;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000125810|ENST00000246006|CD93;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;ENSG00000088812|ENST00000262919|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000117899|ENST00000261758|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000155093|Q92932-2|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000083807|ENST00000263093|SLC27A5;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000109255|ENST00000264218|NMU;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000167680|ENST00000586582|SEMA6B;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000184985|ENST00000507866|SORCS2;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;REV__ENSG00000242866|ENST00000450892|STRC;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__LRP5-CLPB|1|fusion;REV__nc|ENSG00000213402|Q14761|PTPRCAP	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.73724365234375	2	462.348815	922.683077	-0.42242	-0.0001953	0.53658	0.00024809	0.11416	5.2783E-05	462.3488571805974	72.887	0.42219	72.689	72.497	72.919	-0.19811					19	9	3	0	0	0	0.027866	1	8557	8557		43.626	0	1	187340		+	43505	1175;20191;26001;24738;20725;24992;247;3413;7543;6159;9145;19737;22169;689;1762;17640;17639;28649;17642;23497;6088;6926;36021;17641;19288;9391;10397;23731;22379;9401;22130;7909;4616;3864;3370;20822;1876;28588;9487;196;26178;19195;10326;26222;26327;9071;3663;19525;19755;18407;20722;24246;28984;22590;24064;25118;25944;27725;27428;28986;27716;37126;22844;7777;5470;23182;11090;18806;23508;9297;29249;4844;6882;7337;28810;27696;27492;27719;1276;28621;10808;26802;18241;4856;17926;13927;19065;12930;10803;9419;36330;487;8404;7751;7722;7666;6901;6452;5649;21787;27744	30053	30104	48995	48995					0.21864231429651682
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		ENSG00000215644|ENST00000400723|GCGR;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000182685|Q6PL45|BRICD5;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;FAT1|p.A274Cfs*7|1|0.63|ENSG00000083857|chr4:186709008-186709009|-/A|frameshift_variant;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000182272|ENST00000329962|B4GALNT4;B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000125810|ENST00000246006|CD93;ENSG00000104972|ENST00000324602|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000087116|O95450-2|ADAMTS2;nc|ENSG00000131042|Q8N423-3|LILRB2;nc|ENSG00000131042|Q8N423-4|LILRB2;ENSG00000178473|ENST00000380433|UCN3;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;LRP8|p.R147Lfs*14|1|0.28|ENSG00000157193|chr1:53280643-53280644|-/A|frameshift_variant;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000182685|ENST00000328540|BRICD5;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;STRC|p.P154Lfs*30|2|0.21|ENSG00000242866|chr15:43617960-43617960|G/-|frameshift_variant;ENSG00000109255|ENST00000264218|NMU;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;LTBP3|p.Y377Vfs*19|1|0.08|ENSG00000168056|chr11:65552917-65552918|-/AGATATTGCTTAGCGTTAAGTTTTTAAC|frameshift_variant;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.P1123Rfs*41|1|0.31|ENSG00000114554|chr3:127017515-127017515|C/-|frameshift_variant;ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000167261|ENST00000393847|DPEP2;nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	REV__ENSG00000185245|ENST00000329125|GP1BA;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000243364|ENST00000368409|EFNA4;REV__nc|ENSG00000131042|Q8N423-3|LILRB2;REV__FAT1-MTNR1A|1|fusion;ENSG00000054654|ENST00000555002|SYNE2;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000204301|ENST00000375023|NOTCH4;CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;ENSG00000162337|ENST00000294304|LRP5;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000184985|ENST00000507866|SORCS2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000054654|ENST00000555002|SYNE2;FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000204301|ENST00000375023|NOTCH4;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000125810|ENST00000246006|CD93;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;CON__ENSEMBL:ENSBTAP00000023055;EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;ENSG00000088812|ENST00000262919|ATRN;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000117899|ENST00000261758|MESD;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000155093|Q92932-2|PTPRN2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000167680|ENST00000586582|SEMA6B;GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;ENSG00000169174|ENST00000302118|PCSK9;WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000183971|ENST00000566435|NPW;ENSG00000185033|ENST00000411539|SEMA4B;GP1BA|p.G620*|1|0.04|ENSG00000185245|chr17:4934462-4934468|GGGCCTC/-|frameshift_variant;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant;LRP5-CLPB|1|fusion;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000157193|Q14114-2|LRP8;REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant;REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant;REV__CON__ENSEMBL:ENSBTAP00000023055;REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;REV__ENSG00000001036|ENST00000002165|FUCA2;REV__ENSG00000083807|ENST00000263093|SLC27A5;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000109255|ENST00000264218|NMU;REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000117899|ENST00000261758|MESD;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000167680|ENST00000586582|SEMA6B;REV__nc|ENSG00000168056|Q9NS15-2|LTBP3;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000184985|ENST00000507866|SORCS2;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185033|ENST00000411539|SEMA4B;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;REV__ENSG00000242866|ENST00000450892|STRC;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__LRP5-CLPB|1|fusion;REV__nc|ENSG00000213402|Q14761|PTPRCAP	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.348815	922.683077	-0.19975	-9.2353E-05	0.22514	0.00010409	0.025392	1.174E-05	462.34874012768	73.069	0.46887	72.792	72.582	73.051	-0.2769	0.076788	0.00024416	NaN	24.504	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219900		+	43506	1175;20191;26001;24738;20725;24992;247;3413;7543;6159;9145;19737;22169;689;1762;17640;17639;28649;17642;23497;6088;6926;36021;17641;19288;9391;10397;23731;22379;9401;22130;7909;4616;3864;3370;20822;1876;28588;9487;196;26178;19195;10326;26222;26327;9071;3663;19525;19755;18407;20722;24246;28984;22590;24064;25118;25944;27725;27428;28986;27716;37126;22844;7777;5470;23182;11090;18806;23508;9297;29249;4844;6882;7337;28810;27696;27492;27719;1276;28621;10808;26802;18241;4856;17926;13927;19065;12930;10803;9419;36330;487;8404;7751;7722;7666;6901;6452;5649;21787;27744	30053	30104							0.21864231429651682
LLLLLLLPL	9	Unmodified	_LLLLLLLPL_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000137142|ENST00000377694|IGFBPL1;nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8;ENST00000374369.7_1_20:34025707-34025902:-|nuORF;ENST00000361799.6_1_1:44870995-44877742:+|nuORF;ENST00000355387.6_1_1:44870947-44877656:+|nuORF;ENSG00000134917|ENST00000257359|ADAMTS8;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000183971|ENST00000566435|NPW;nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET;CON__Q6T181;nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8	ENSG00000149930|ENST00000308893|TAOK2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__nc|ENSG00000110076|P58401|NRXN2;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000183971|ENST00000566435|NPW;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000165731|P07949-2|RET;REV__nc|ENSG00000149930|Q9UL54-3|TAOK2;CON__Q6T181;nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;REV__ENSG00000005108|ENST00000423059|THSD7A;REV__ENSG00000104805|ENST00000405315|NUCB1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7894592285156	2	510.875197	1019.73584	-0.33386	-0.00017056	-2.9432	-0.0015036	-3.2771	-0.0016742	510.873163336068	85.629	0.28735	85.571	85.397	85.684	-0.05761					8	6	2	0	0	0	0.024541	1	10707	10707		4.3163	0	1	94838		+	43507	26001;24992;6126;196;3864;23731;26327;7460;9297;4844;28986;36776;36563;19795;562;2662;21465	30054	30105	48996	48996					0.22676189492460708
LLLLLLLPL	9	Unmodified	_LLLLLLLPL_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000137142|ENST00000377694|IGFBPL1;nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8;ENST00000374369.7_1_20:34025707-34025902:-|nuORF;ENST00000361799.6_1_1:44870995-44877742:+|nuORF;ENST00000355387.6_1_1:44870947-44877656:+|nuORF;ENSG00000134917|ENST00000257359|ADAMTS8;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000183971|ENST00000566435|NPW;nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET;CON__Q6T181;nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8	ENSG00000149930|ENST00000308893|TAOK2;ENSG00000134917|ENST00000257359|ADAMTS8;REV__nc|ENSG00000110076|P58401|NRXN2;C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000121316|ENST00000240617|PLBD1;ENSG00000183971|ENST00000566435|NPW;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000169174|ENST00000302118|PCSK9;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000165731|P07949-2|RET;REV__nc|ENSG00000149930|Q9UL54-3|TAOK2;CON__Q6T181;nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;REV__ENSG00000005108|ENST00000423059|THSD7A;REV__ENSG00000104805|ENST00000405315|NUCB1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.875197	1019.73584	0.57376	0.00029312	-9.242	-0.0047215	-8.6682	-0.0044284	510.870430453171	85.581	0.16489	85.431	85.327	85.492	-0.14967	-0.069906	-0.0021605	NaN	0	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52209		+	43508	26001;24992;6126;196;3864;23731;26327;7460;9297;4844;28986;36776;36563;19795;562;2662;21465	30054	30105							0.22676189492460708
LLLLLLLR	8	Unmodified	_LLLLLLLR_					0	0	0		ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ST8SIA6|p.E161Gfs*5|1|0.3|ENSG00000148488|chr10:17331448-17331449|-/C|frameshift_variant;ENSG00000142552|ENST00000270645|RCN3;ENST00000498707.5_1_3:64673464-64673620:-|nuORF;nc|ENSG00000134470|Q13261-4|IL15RA;nc|ENSG00000134470|Q13261-8|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;ENSG00000134470|ENST00000379977|IL15RA;nc|ENSG00000134470|Q13261-9|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000141096|ENST00000268793|DPEP3;ENSG00000005108|ENST00000423059|THSD7A;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000101955|P78539-3|SRPX;ENSG00000101955|ENST00000378533|SRPX;nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000104805|ENST00000405315|NUCB1;ENSG00000148488|ENST00000377602|ST8SIA6	REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000141096|ENST00000268793|DPEP3;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000005108|ENST00000423059|THSD7A;REV__ENSG00000169418|ENST00000368680|NPR1;REV__ENSG00000267631|ENST00000301407|CGB1;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;REV__ENSG00000170775|ENST00000303921|GPR37;nc|ENSG00000101955|P78539-3|SRPX;REV__ENSG00000136928|ENST00000259455|GABBR2;REV__nc|ENSG00000165731|P07949-2|RET;REV__ENST00000311177.6_1_17:46698590-46699007:-|nuORF;ENSG00000148488|ENST00000377602|ST8SIA6;REV__nc|ENSG00000080644|P32297-3|CHRNA3	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2380065917969	2	483.857338	965.700124	-1.1024	-0.0005334	-1.0915	-0.00052815	-2.1939	-0.0010615	483.8566631746349	40.586	0.39258	40.355	40.197	40.589	-0.23028					16	10	3	0	0	0	0.027866	1	3543	3543		0	0	1	252870			43509	24738;28649;20822;23705;18806;5470;24064;26366;25923;26502;2364;30201;29148;6037;759;7581;20660	30055	30106	48997	48997					0.21590152035457777
LLLLLLLR	8	Unmodified	_LLLLLLLR_					0	0	0		ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000228789|E2RYF7|HCG22;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ST8SIA6|p.E161Gfs*5|1|0.3|ENSG00000148488|chr10:17331448-17331449|-/C|frameshift_variant;ENSG00000142552|ENST00000270645|RCN3;ENST00000498707.5_1_3:64673464-64673620:-|nuORF;nc|ENSG00000134470|Q13261-4|IL15RA;nc|ENSG00000134470|Q13261-8|IL15RA;nc|ENSG00000134470|Q13261-5|IL15RA;ENSG00000134470|ENST00000379977|IL15RA;nc|ENSG00000134470|Q13261-9|IL15RA;nc|ENSG00000134470|Q13261-6|IL15RA;nc|ENSG00000134470|Q13261-7|IL15RA;nc|ENSG00000134470|Q13261-3|IL15RA;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000141096|ENST00000268793|DPEP3;ENSG00000005108|ENST00000423059|THSD7A;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000101955|P78539-3|SRPX;ENSG00000101955|ENST00000378533|SRPX;nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENSG00000104805|ENST00000405315|NUCB1;ENSG00000148488|ENST00000377602|ST8SIA6	REV__ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000283706|Q9UI38|PRSS50;ENSG00000141096|ENST00000268793|DPEP3;REV__ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000005108|ENST00000423059|THSD7A;REV__ENSG00000169418|ENST00000368680|NPR1;REV__ENSG00000267631|ENST00000301407|CGB1;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;REV__ENSG00000170775|ENST00000303921|GPR37;nc|ENSG00000101955|P78539-3|SRPX;REV__ENSG00000136928|ENST00000259455|GABBR2;REV__nc|ENSG00000165731|P07949-2|RET;REV__ENST00000311177.6_1_17:46698590-46699007:-|nuORF;ENSG00000148488|ENST00000377602|ST8SIA6;REV__nc|ENSG00000080644|P32297-3|CHRNA3	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.857338	965.700124	-0.20662	-9.9976E-05	5.0366	0.002437	4.83	0.002337	483.85927360342737	40.518	0.21785	40.293	40.114	40.332	-0.225	-0.031133	0.0032432	NaN	8.8223	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226170			43510	24738;28649;20822;23705;18806;5470;24064;26366;25923;26502;2364;30201;29148;6037;759;7581;20660	30055	30106							0.21590152035457777
LLLLLLLRPPP	11	Unmodified	_LLLLLLLRPPP_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5232238769531	3	419.960082	1256.85842	0.46406	0.00019489	-3.7472	-0.0015737	-3.2831	-0.0013788	419.958394179803	19.153	0.29771	18.992	18.836	19.134	-0.16079					11	5	3	0	0	0	0.024869	1	401	401		6.3209	0	1	17429	+		43511	24738	30056	30107	48998	48998					0.24026026223896224
LLLLLLLRPPP	11	Unmodified	_LLLLLLLRPPP_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	419.960082	1256.85842	0.67746	0.00028451	-3.5326	-0.0014836	-2.8552	-0.0011991	419.95826974563573	19.183	0.29655	18.983	18.859	19.156	-0.2001	-0.00036573	0.0009277	NaN	6.3209	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19997	+		43512	24738	30056	30107							0.24026026223896224
LLLLLLLRPPP	11	Unmodified	_LLLLLLLRPPP_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	419.960082	1256.85842	2.2288	0.00093601	-5.1804	-0.0021756	-2.9516	-0.0012396	419.9578134542005	19.207	0.29641	18.974	18.78	19.077	-0.23345	-0.0091131	-0.0011483	NaN	6.3209	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19171	+		43513	24738	30056	30107							0.24026026223896224
LLLLLLPPAL	10	Unmodified	_LLLLLLPPAL_					0	0	0		ENSG00000161610|ENST00000293330|HCRT	ENSG00000161610|ENST00000293330|HCRT	ENSG00000161610|ENST00000293330|HCRT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3270874023438	2	538.378103	1074.74165	-0.74704	-0.00040219	-0.50935	-0.00027422	-1.2564	-0.00067642	538.3778244337466	99.81	0.19924	99.639	99.495	99.695	-0.17088					8	5	2	0	0	0	0.03519	1	12361	12361		12.959	0	1	26278			43514	6882	30057	30108	48999	48999					0.20727288004104594
LLLLLLPPLVL	11	Unmodified	_LLLLLLPPLVL_					0	0	0		nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MSMS	OPSCC_39_ClassI_Rep-3	3	406.2961120605469	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.85	1	112.86	112.36	113.36	0.0084457								0	0	0	1.7978	1	14048	14048		1.523	0	1				43515	11090	30058	30109	49000	49000					0.2577239213512712
LLLLLPEVDRQ	11	Unmodified	_LLLLLPEVDRQ_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;nc|ENSG00000141431|Q9C0F0-2|ASXL3	ENSG00000143970|ENST00000435504|ASXL2;ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	ENSG00000143970|ENST00000435504|ASXL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.93389892578125	3	436.934372	1307.78129	0.042733	1.8672E-05	-0.76699	-0.00033512	-0.72426	-0.00031645	436.9338403733163	20.466	3.1397	20.298	20.002	23.141	-0.16774					157	65	4	0	0	0	1.0674	1	569	569		20.315	1.0523	1	862240			43516	5705;141	30059	30110	49001	49001					0.13970763216889281
LLLLLPQP	8	Unmodified	_LLLLLPQP_					0	0	0		ENST00000396908.8_2_19:36255765-36256006:+|nuORF	ENST00000396908.8_2_19:36255765-36256006:+|nuORF	ENST00000396908.8_2_19:36255765-36256006:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.75006103515625	2	453.804771	905.59499	-0.38184	-0.00017328	0.40214	0.0001825	0.020309	9.2164E-06	453.80480628282453	81.436	1.5171	81.305	81.015	82.532	-0.13075					56	36	3	0	0	0	0.027866	1	10147	10147		21.702	1.2205	1	409130			43517	13568	30060	30111	49002	49002					0.13841610839040186
LLLLLSSN	8	Unmodified	_LLLLLSSN_					0	0	0			REV__ENST00000169298.7_1_3:186793630-186793699:+|nuORF	REV__ENST00000169298.7_1_3:186793630-186793699:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7748718261719	2	436.776211	871.537869	-0.55494	-0.00024239	-2.6294	-0.0011485	-3.1844	-0.0013909	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	1.0572	1	11113	11113		28.254	0	1	24367000	+		43518	29278	30061	30112	49003	49003					0.09696143562666748
LLLLLTHLP	9	Unmodified	_LLLLLTHLP_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8260498046875	2	516.844428	1031.6743	-0.58786	-0.00030383	4.1869	0.002164	3.5991	0.0018602	516.8471119607078	56.887	0.33254	56.887	56.778	57.111	0					10	9	2	0	0	0	0.024466	1	6407	6407		33.516	22.005	1	114340			43519	4130	30062	30113	49004	49004					0.15973257793189077
LLLLLTLCL	9	Unmodified	_LLLLLTLCL_					0	0	0		ENSG00000121578|ENST00000393765|B4GALT4	ENSG00000121578|ENST00000393765|B4GALT4	ENSG00000121578|ENST00000393765|B4GALT4	MSMS	OPSCC_40_ClassI_Rep-2	5	507.8368835449219	2	507.835214	1013.65588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.718	1	17.512	17.012	18.012	-0.20669								0	0	0	0.67604	1	208	208		25.45	3.4903	1				43520	3875	30063	30114	49005	49005					0.1495937982696205
LLLLLTVLI	9	Unmodified	_LLLLLTVLI_					0	0	0		ENST00000260952.8_2_2:190532026-190532098:+|nuORF	ENST00000260952.8_2_2:190532026-190532098:+|nuORF	ENST00000260952.8_2_2:190532026-190532098:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8158264160156	2	505.864829	1009.7151	0.21688	0.00010971	-4.3684	-0.0022098	-4.1515	-0.0021001	506.36429000976415	68.356	0.2032	68.094	67.939	68.142	-0.26165					5	4	2	0	0	0	0.024541	1	7880	7880		8.2313	0	1	36153			43521	11456	30064	30115	49006	49006					0.21063599112801512
LLLLLVVT	8	Unmodified	_LLLLLVVT_					0	0	0		ENSG00000204381|ENST00000375614|LAYN;nc|ENSG00000204381|Q6UX15|LAYN;nc|ENSG00000204381|Q6UX15-3|LAYN	REV__nc|ENSG00000213402|Q14761|PTPRCAP;ENSG00000204381|ENST00000375614|LAYN	REV__nc|ENSG00000213402|Q14761|PTPRCAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.289794921875	2	442.314972	882.615391	-0.70315	-0.00031101	0.14854	6.5702E-05	-0.55461	-0.00024531	442.3136602196163	44.386	1.1498	44.166	43.864	45.014	-0.21939					47	30	3	0	0	0	0.027866	1	4157	4157		14.664	0	1	435130			43522	37126;10337	30065	30116	49007	49007					0.1693878149885677
LLLLLWPVP	9	Unmodified	_LLLLLWPVP_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7835693359375	2	532.349346	1062.68414	0.040629	2.1629E-05	-3.8432	-0.0020459	-3.8026	-0.0020243	532.3473227240596	83.437	0.9749	83.267	82.99	83.965	-0.16915					27	22	2	0	0	0	0.024541	1	10045	10045		21.702	2.5988	1	175090			43523	6088	30066	30117	49008	49008					0.15530445798549408
LLLLMLGCV	9	Unmodified	_LLLLMLGCV_					0	0	0		ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.791259765625	2	487.792492	973.570431	0.89451	0.00043633	-3.2998	-0.0016096	-2.4053	-0.0011733	487.7908895121262	96.705	1.7766	96.582	95.509	97.285	-0.12305					55	40	2	0	0	0	0.93795	1	11940	11940		29.842	0.69198	1	797160			43524	4518	30067	30118	49009	49009					0.0825889136965543
LLLLPLLGKV	10	Unmodified	_LLLLPLLGKV_					0	0	0		nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET	nc|ENSG00000165731|P07949-2|RET	nc|ENSG00000165731|P07949-2|RET	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7926025390625	2	539.883553	1077.75255	-1.0309	-0.00055658	-4.058	-0.0021908	-5.0889	-0.0027474	539.8800285803329	78.264	0.20076	78.28	78.114	78.315	0.015907					7	4	2	0	0	0	0.03519	1	9586	9586		3.6843	3.6843	1	55042			43525	7460	30068	30119	49010	49010					0.21678690378416832
LLLLPNHSVNK	11	Unmodified	_LLLLPNHSVNK_					0	0	0			REV__ENSG00000116711|ENST00000367466|PLA2G4A	REV__ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.376953125	2	624.377155	1246.73976	0.2017	0.00012593	4.4909	0.002804	4.6926	0.0029299	624.3798069627062	105.29	0.38515	105.29	105.06	105.45	0					23	9	3	0	0	0	1.0442	1	13501	13501		26.693	3.1702	1	694610	+		43526	22295	30069	30120	49011	49011					0.12625627248235105
LLLLPNMKL	9	Unmodified	_LLLLPNMKL_					0	0	0			REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3551635742188	2	527.838288	1053.66202	0.171	9.0258E-05	3.62	0.0019108	3.791	0.0020011	527.8403199089291	50.365	0.46486	50.446	50.211	50.676	0.08099					19	13	2	0	0	0	0.024386	1	5172	5172		42.474	1.9018	1	324670	+		43527	35518	30070	30121	49012	49012					0.13733898058490013
LLLLQATA	8	Unmodified	_LLLLQATA_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.58203125	2	421.770929	841.527304	0.69797	0.00029438	-4.1172	-0.0017365	-3.4192	-0.0014421	421.7693434977176	96.556	0.52377	96.419	96.222	96.746	-0.13671					21	11	3	0	0	0	0.027866	1	11931	11931		12.959	0	1	96343			43528	5772	30071	30122	49013	49013					0.10020160908220532
LLLLQATA	8	Unmodified	_LLLLQATA_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	421.770929	841.527304	0.66018	0.00027844	-3.906	-0.0016474	-3.2458	-0.001369	421.76941928253405	96.5	0.65316	96.506	96.228	96.881	0.0065079	0.0030222	0.00036597	NaN	12.959	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139260			43529	5772	30071	30122							0.10020160908220532
LLLLQATA	8	Unmodified	_LLLLQATA_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;MYH15|p.N945Ffs*8|1|0.05|ENSG00000144821|chr3:108441143-108441144|-/CCACTCTCAAA|frameshift_variant	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	421.770929	841.527304	1.3036	0.00054982	-4.8589	-0.0020494	-3.5553	-0.0014995	421.7691517437901	96.55	0.6944	96.55	96.231	96.926	-3.0518E-05	0.046961	-0.00043788	NaN	12.959	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128720			43530	5772	30071	30122							0.10020160908220532
LLLLQPVHER	10	Unmodified	_LLLLQPVHER_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.58441162109375	3	406.583674	1216.72919	0.36669	0.00014909	0.40293	0.00016383	0.76962	0.00031291	406.5837615324145	110.7	0.44067	110.58	110.51	110.95	-0.12525					30	15	2	0	0	0	1.1117	1	13620	13620		16.717	0.71061	1	830120	+		43531	25558	30072	30123	49014	49014					0.12949644593800258
LLLLRSPYT	9	Unmodified	_LLLLRSPYT_					0	0	0		ENST00000338488.8_1_9:102584219-102584522:+|nuORF	ENST00000338488.8_1_9:102584219-102584522:+|nuORF	ENST00000338488.8_1_9:102584219-102584522:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3272705078125	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	0.85329	1	12766	12766		35.618	3.6634	1	22353000			43532	12440	30073	30124	49015	49015					0.10939479408125408
LLLLSGTM	8	Unmodified	_LLLLSGTM_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2505798339844	2	424.251514	846.488476	-0.78296	-0.00033217	-1.8331	-0.00077769	-2.6161	-0.0011099	424.25068578129424	102.81	3.5004	102.81	100.1	103.6	0					120	81	3	0	0	0	1.0574	1	13203	13203		26.796	3.7594	1	6301600	+		43533	27257	30074	30125	49016	49016					0.059091122822110265
LLLLSGTM	8	Unmodified	_LLLLSGTM_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.24957275390625	2	424.251514	846.488476	0.45724	0.00019398	-3.0224	-0.0012823	-2.5652	-0.0010883	424.2501970516105	102.85	2.0987	102.85	102.33	104.43	-0.0046005					96	50	3	0	0	0	1.0133	1	13110	13110		35.201	3.6218	1	7378400	+		43534	27257	30074	30125	49017	49017					0.059091122822110265
LLLLSLSN	8	Unmodified	_LLLLSLSN_					0	0	0		ENST00000264657.9_1_17:40467570-40467729:-|nuORF	ENST00000264657.9_1_17:40467570-40467729:-|nuORF	ENST00000264657.9_1_17:40467570-40467729:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7747497558594	2	436.776211	871.537869	-0.42442	-0.00018538	-2.8951	-0.0012645	-3.3196	-0.0014499	436.77487826052743	90.03	2.3328	90.03	89.44	91.772	0					165	55	5	0	0	0	1.0572	1	11385	11385		28.254	0	1	38190000			43535	11567	30075	30126	49018	49018					0.0969614356265538
LLLLTLLTHSA	11	Unmodified	_LLLLTLLTHSA_					0	0	0		nc|ENSG00000211642|A0A075B6I4|IGLV10-54	nc|ENSG00000211642|A0A075B6I4|IGLV10-54	nc|ENSG00000211642|A0A075B6I4|IGLV10-54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	597.8561401367188	2	597.876456	1193.73836	-1.6618	-0.00099356	-2.6542	-0.0015869	-4.316	-0.0025804	597.8756262835949	92.851	0.34412	92.851	92.665	93.009	0					10	7	2	0	0	0	0.024749	1	11762	11762		19.104	0	1	25115			43536	18683	30076	30127	49019	49019					0.14923993159482052
LLLLVGASWL	10	Unmodified	_LLLLVGASWL_					0	0	0		nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000592279.6_1_19:15751729-15757926:+|nuORF;ENST00000608168.1_1_19:16003249-16008861:-|nuORF	nc|ENSG00000186529|Q08477-2|CYP4F3	nc|ENSG00000186529|Q08477-2|CYP4F3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2575073242188	2	542.841885	1083.66922	-0.71116	-0.00038605	-3.6975	-0.0020071	-4.4086	-0.0023932	542.8397221170261	48.048	0.84592	47.772	47.305	48.151	-0.27598					48	22	3	0	0	0	0.03519	1	4667	4667		40.573	1.7665	1	517080			43537	9559	30077	30128	49020	49020					0.13072953930554831
LLLLVTRPA	9	Unmodified	_LLLLVTRPA_					0	0	0			REV__ENST00000434333.1_1_6:31324722-31324935:-|nuORF	REV__ENST00000434333.1_1_6:31324722-31324935:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.3343811035156	2	498.334227	994.653902	0.37447	0.00018661	-0.59923	-0.00029862	-0.22476	-0.00011201	498.33387218002036	74.564	0.59087	74.305	73.986	74.577	-0.25887					46	13	4	0	0	0	0.56952	1	9113	9113		54.765	4.7401	1	5843200	+		43538	28919	30078	30129	49021	49021					0.15636087133361798
LLLLVWEL	8	Unmodified	_LLLLVWEL_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.79559326171875	2	499.817879	997.621205	-0.42389	-0.00021187	-3.871	-0.0019348	-4.2949	-0.0021467	499.81561154163256	67.141	0.48255	66.859	66.672	67.154	-0.28148					19	11	2	0	0	0	0.027866	1	7961	7961		14.664	6.4328	1	1423800	+		43539	19816	30079	30130	49022	49022					0.12229880010499983
LLLLWPMP	8	Unmodified	_LLLLWPMP_					0	0	0			REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.26666259765625	2	491.793349	981.572146	-0.55303	-0.00027198	0.50952	0.00025058	-0.043516	-2.1401E-05	491.7935143111037	28.977	1.4142	28.98	28.337	29.751	0.0031376					55	34	2	0	0	0	0.027866	1	1664	1664		54.895	11.269	1	1746500	+		43540	28986	30080	30131	49023	49023					0.08062268449918975
LLLMCVLQI	9	Unmodified	_LLLMCVLQI_					0	0	0			REV__chr12:85876701-85882223|176|81.78|0.56|7.19|+|ENST00000551529|NTS,NTS	REV__chr12:85876701-85882223|176|81.78|0.56|7.19|+|ENST00000551529|NTS,NTS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7902221679688	2	523.311049	1044.60755	-0.49277	-0.00025787	-0.66201	-0.00034644	-1.1548	-0.00060431	523.3107593275432	60.808	0.79616	60.602	60.295	61.091	-0.20599					85	19	6	0	0	0	0.024294	1	6777	6777		55.504	11.387	1	2615400	+		43541	19363	30081	30132	49024	49024					0.08702562915414092
LLLMDELVL	9	Unmodified	_LLLMDELVL_					0	0	0			REV__ENST00000205402.9_1_7:107542209-107542251:+|nuORF	REV__ENST00000205402.9_1_7:107542209-107542251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2669067382812	2	529.811936	1057.60932	-0.087787	-4.651E-05	-3.8018	-0.0020142	-3.8896	-0.0020608	529.8097300404974	53.291	0.34152	53.101	52.942	53.283	-0.18982					13	8	2	0	0	0	0.024517	1	5545	5545		12.959	2.6939	1	151830	+		43542	29301	30082	30133	49025	49025					0.08281895205027467
LLLMDSSSTG	10	Unmodified	_LLLMDSSSTG_					0	0	0			REV__ENST00000419804.5_3_X:152937579-152953009:-|nuORF	REV__ENST00000419804.5_3_X:152937579-152953009:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2534790039062	2	512.254982	1022.49541	-0.65531	-0.00033569	-3.3861	-0.0017345	-4.0414	-0.0020702	512.2536777176458	54.27	2.8689	54.134	53.564	56.433	-0.13617					233	80	5	0	0	0	0.98754	1	5807	5807		47.657	5.2612	1	53582000	+		43543	32149	30083	30134	49026	49026					-0.014936196278540592
LLLMIIIFIY	10	Unmodified	_LLLMIIIFIY_					0	0	0			REV__ENST00000299612.11_1_17:19286554-19286854:+|nuORF	REV__ENST00000299612.11_1_17:19286554-19286854:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	626.3968505859375	2	626.392896	1250.77124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.69	1	107.57	107.07	108.07	-0.1238								0	0	0	0.77053	1	13381	13381		19.36	0	1		+		43544	30036	30084	30135	49027	49027					0.15588483957981225
LLLMLLPS	8	Unmodified	_LLLMLLPS_					0	0	0		ENST00000479322.1_1_1:218607587-218614701:+|nuORF;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENST00000479322.1_1_1:218607587-218614701:+|nuORF	ENST00000479322.1_1_1:218607587-218614701:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2066955566406	2	450.285357	898.556161	0.61463	0.00027676	2.5802	0.0011618	3.1948	0.0014386	450.2861924816498	22.649	0.4597	22.447	22.24	22.7	-0.20199					15	9	2	0	0	0	0.027866	1	798	798		26.796	0	1	30387			43545	2002	30085	30136	49028	49028					0.10282562213012625
LLLMNENQI	9	Unmodified	_LLLMNENQI_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7952270507812	2	544.294442	1086.57433	-0.14114	-7.6822E-05	-0.83849	-0.00045638	-0.97963	-0.00053321	544.7952835173093	55.149	1.3759	55.149	54.623	55.999	0					109	38	5	0	0	0	0.15366	2	6077	6077;6086		98.629	8.0346	1	6359300	+		43546	26887	30086	30137	49029;49030	49029					0.03450652397077647
LLLMYVDLKVF	11	Unmodified	_LLLMYVDLKVF_					0	0	0		ENST00000338910.8_1_13:20277187-20277373:-|nuORF	ENST00000338910.8_1_13:20277187-20277373:-|nuORF	ENST00000338910.8_1_13:20277187-20277373:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.93280029296875	3	451.933204	1352.77778	0.91985	0.00041571	-2.1466	-0.00097011	-1.2267	-0.0005544	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0592	1	12229	12229		22.562	2.5311	1	1435400			43547	12450	30087	30138	49031	49031					0.11550377118646793
LLLNKPPRGR	10	Unmodified	_LLLNKPPRGR_					0	0	0			REV__ENSG00000126705|ENST00000673934|AHDC1	REV__ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.3531494140625	2	582.372207	1162.72986	0.43832	0.00025526	2.4815	0.0014451	2.9198	0.0017004	582.3734330313375	102.27	0.30866	102.26	102.15	102.46	-0.0054474					11	6	2	0	0	0	0.03519	1	13018	13018		15.642	0	1	52762	+		43548	22906	30088	30139	49032	49032					0.15500484033509565
LLLNLQTKF	9	Unmodified	_LLLNLQTKF_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2828369140625	2	545.336967	1088.65938	0.12321	6.719E-05	-1.9629	-0.0010704	-1.8397	-0.0010032	545.335674032806	51.123	0.26433	50.846	50.74	51.004	-0.27643					12	6	3	0	0	0	0.024477	1	5229	5229		44.117	5.3107	1	371640	+		43549	28200	30089	30140	49033	49033					0.11859765925169086
LLLNRQPTL	9	Unmodified	_LLLNRQPTL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.279052734375	2	534.332216	1066.64988	-0.3611	-0.00019295	-0.6914	-0.00036944	-1.0525	-0.00056239	534.3319396810095	57.105	0.2982	56.88	56.7	56.998	-0.22479					10	7	2	0	0	0	0.024535	1	6205	6205		18.324	0	1	115410			43550	1387	30090	30141	49034	49034					0.11921997639660731
LLLPAARLL	9	Unmodified	_LLLPAARLL_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.33648681640625	2	490.33677	978.658987	-0.23798	-0.00011669	0.20669	0.00010135	-0.031288	-1.5341E-05	490.3366994535845	82.387	2.6741	82.387	81.83	84.504	0					133	62	4	0	0	0	0.88411	1	10323	10323		33.516	3.0119	1	869100	+		43551	20413	30091	30142	49035	49035					0.16880390995981998
LLLPAVALV	9	Unmodified	_LLLPAVALV_					0	0	0		ENSG00000149506|ENST00000278853|ZP1	ENSG00000149506|ENST00000278853|ZP1	ENSG00000149506|ENST00000278853|ZP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.81182861328125	2	454.812596	907.61064	0.50675	0.00023048	-0.63808	-0.00029021	-0.13133	-5.973E-05	454.8121985209513	100.25	0.43083	100.25	100.12	100.55	-0.0050812					17	10	2	0	0	0	0.48384	2	12769	12750;12769		60.404	21.382	1	263970			43552	6098	30092	30143	49036;49037	49037					0.15313897356077177
LLLPFDLALG	10	Unmodified	_LLLPFDLALG_					0	0	0			REV__nc|ENSG00000226777|Q9NZY2|FAM30A	REV__nc|ENSG00000226777|Q9NZY2|FAM30A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3486938476562	2	536.326068	1070.63758	-0.22342	-0.00011982	-3.4563	-0.0018537	-3.6797	-0.0019735	536.3241984256753	88.886	0.4249	88.902	88.667	89.092	0.015907					15	9	2	0	0	0	0.03519	1	11132	11132		47.916	0	1	117630	+		43553	37142	30093	30144	49038	49038					0.10508961176583398
LLLPFRQAP	9	Unmodified	_LLLPFRQAP_					0	0	0			REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8057861328125	2	527.824027	1053.6335	-0.99075	-0.00052294	1.9929	0.0010519	1.0021	0.00052895	527.8239768972344	48.966	1.3839	49.04	48.309	49.693	0.074196					127	37	6	0	0	0	0.024517	1	5069	5069		19.36	3.7238	1	2817500	+		43554	31866	30094	30145	49039	49039					0.10882916473565274
LLLPGGLRPL	10	Unmodified	_LLLPGGLRPL_					0	0	0		ENST00000392341.5_1_17:80197025-80197367:+|nuORF	ENST00000392341.5_1_17:80197025-80197367:+|nuORF	ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.3029174804688	2	524.847502	1047.68045	0.63859	0.00033516	-0.73132	-0.00038383	-0.092737	-4.8673E-05	524.8470595188993	63.733	0.43198	63.733	63.558	63.99	0					19	11	3	0	0	0	0.03519	1	7483	7483		37.159	12.956	1	226770			43555	13411	30095	30146	49040	49040					0.158517760246923
LLLPGTLDL	9	Unmodified	_LLLPGTLDL_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3;REV__CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant;REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.79742431640625	2	477.797143	953.579734	0.94443	0.00045125	-0.85542	-0.00040872	0.08901	4.2529E-05	477.79663613466545	96.284	2.5404	96.29	95.477	98.017	0.0065002					149	58	5	0	0	0	0.67308	1	12213	12213		47.916	1.9636	1	7638300	+		43556	20542;19879;19288	30096	30147	49041	49041					0.10108699251179587
LLLPHMKKID	10	Unmodified	_LLLPHMKKID_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.2474365234375	3	403.245893	1206.71585	0.52792	0.00021288	2.0057	0.00080878	2.5336	0.0010217	403.2466960427338	103.28	1.2607	103.29	102.89	104.15	0.0054245					81	31	4	0	0	0	1.1295	1	13227	13227		26.063	0	1	2575000			43557	1240	30097	30148	49042	49042					0.12076070490184065
LLLPHVQT	8	Unmodified	_LLLPHVQT_					0	0	0			REV__ENST00000278071.6_1_10:106073096-106073477:-|nuORF	REV__ENST00000278071.6_1_10:106073096-106073477:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.3034362792969	2	460.781828	919.549102	0.044111	2.0326E-05	-0.64193	-0.00029579	-0.59782	-0.00027547	460.78148009045117	45.833	0.27287	45.833	45.748	46.021	0					11	7	2	0	0	0	0.027866	1	4504	4504		29.15	0	1	89701	+		43558	29862	30098	30149	49043	49043					0.08610965656805547
LLLPILVTV	9	Unmodified	_LLLPILVTV_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.8420715332031	2	490.841354	979.668155	0.67839	0.00033298	-0.8542	-0.00041928	-0.17581	-8.6296E-05	490.84071598485474	105.93	0.47302	105.93	105.65	106.12	0					36	18	3	0	0	0	0.36105	1	13606	13606		68.485	16.186	1	135530			43559	10229	30099	30150	49044	49044					0.17750739561677165
LLLPILVTV	9	Unmodified	_LLLPILVTV_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.84173583984375	2	490.841354	979.668155	0.049117	2.4109E-05	-0.18358	-9.0111E-05	-0.13447	-6.6002E-05	490.84112315921334	105.88	0.5228	105.88	105.67	106.2	-0.0013123					33	18	3	0	0	0	0.52323	1	13561	13561		57.811	15.337	1	201160			43560	10229	30099	30150	49045	49045					0.17750739561677165
LLLPIMWL	8	Unmodified	_LLLPIMWL_					0	0	0		ENST00000342992.10_3_2:179456809-179456971:-|nuORF	ENST00000342992.10_3_2:179456809-179456971:-|nuORF	ENST00000342992.10_3_2:179456809-179456971:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	499.8111877441406	2	499.808999	997.603446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.55	1	103.55	103.05	104.05	-0.0032196								0	0	0	0.93994	1	13208	13208		24.504	1.4615	1				43561	12518	30100	30151	49046	49046					0.10454841484011013
LLLPISVD	8	Unmodified	_LLLPISVD_					0	0	0			REV__nc|ENSG00000118369|Q9P2H5-2|USP35	REV__nc|ENSG00000118369|Q9P2H5-2|USP35	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2693786621094	2	435.270761	868.52697	-0.094046	-4.0935E-05	-3.5712	-0.0015544	-3.6652	-0.0015954	435.2692346075311	23.255	1.6602	23.331	22.702	24.362	0.076241					91	37	4	0	0	0	1.0572	1	870	870		28.254	0	1	11197000	+		43562	22400	30101	30152	49047	49047					0.08744741188388616
LLLPIYDY	8	Unmodified	_LLLPIYDY_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3236389160156	2	505.283869	1008.55318	-0.11398	-5.7593E-05	-2.4918	-0.0012591	-2.6058	-0.0013167	505.7839826856291	78.779	0.34655	78.623	78.427	78.773	-0.15591					14	7	2	0	0	0	0.027866	1	9414	9414		21.702	0	1	123860	+		43563	27726	30102	30153	49048	49048					0.04925010359852422
LLLPLLLAGP	10	Unmodified	_LLLPLLLAGP_					0	0	0		ENSG00000116962|ENST00000264187|NID1;nc|ENSG00000116962|P14543-2|NID1;NID1|p.Y191Mfs*89|1|0.3|ENSG00000116962|chr1:236045639-236045639|G/-|frameshift_variant	ENSG00000116962|ENST00000264187|NID1	ENSG00000116962|ENST00000264187|NID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2638854980469	2	510.346803	1018.67905	0.10029	5.1185E-05	2.0609	0.0010518	2.1612	0.001103	510.8491748375124	81.199	0.12583	81.006	80.924	81.05	-0.19333					4	2	2	0	0	0	0.03519	1	9765	9765		19.36	6.4008	1	16962			43564	3595	30103	30154	49049	49049					0.1704614193595262
LLLPLLML	8	Unmodified	_LLLPLLML_					0	0	0		ENSG00000087303|ENST00000216286|NID2	ENSG00000087303|ENST00000216286|NID2	ENSG00000087303|ENST00000216286|NID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.7796325683594	2	463.311375	924.608197	0.74357	0.0003445	3.5061	0.0016244	4.2496	0.0019689	463.3127915571955	67.686	0.62694	67.431	67.113	67.74	-0.25516					26	14	3	0	0	0	0.027866	1	7830	7830		16.705	0	1	531740			43565	1847	30104	30155	49050	49050					0.14287725626775227
LLLPLLML	8	Unmodified	_LLLPLLML_					0	0	0		ENSG00000087303|ENST00000216286|NID2	ENSG00000087303|ENST00000216286|NID2	ENSG00000087303|ENST00000216286|NID2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.311375	924.608197	-0.08715	-4.0378E-05	4.4341	0.0020544	4.347	0.002014	463.31323216049907	67.601	0.50195	67.367	67.134	67.636	-0.23375	-0.012573	0.00017744	NaN	10.185	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346470			43566	1847	30104	30155							0.14287725626775227
LLLPLLML	8	Unmodified	_LLLPLLML_					0	0	0		ENSG00000087303|ENST00000216286|NID2	ENSG00000087303|ENST00000216286|NID2	ENSG00000087303|ENST00000216286|NID2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.311375	924.608197	-0.30648	-0.000142	4.5935	0.0021282	4.287	0.0019862	463.31333364216795	67.58	0.55083	67.341	67.118	67.669	-0.23814	-0.038414	0.0003251	NaN	10.185	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486910			43567	1847	30104	30155							0.14287725626775227
LLLPLPRRS	9	Unmodified	_LLLPLPRRS_					0	0	0		ENST00000368849.7_1_1:151554198-151554447:+|nuORF	ENST00000368849.7_1_1:151554198-151554447:+|nuORF	ENST00000368849.7_1_1:151554198-151554447:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	532.850830078125	2	532.850576	1063.6866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.979	1	15.771	15.271	16.271	-0.20777								0	0	0	0.73432	1	44	44		12.959	0	1				43568	12907	30105	30156	49051	49051					0.15730294256240995
LLLPLRRRWRR	11	Unmodified	_LLLPLRRRWRR_					0	0	0		ENST00000418337.6_2_7:151292537-151329253:-|nuORF;ENST00000493872.5_1_7:151328836-151329256:-|nuORF	ENST00000418337.6_2_7:151292537-151329253:-|nuORF	ENST00000418337.6_2_7:151292537-151329253:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2535400390625	3	512.335427	1533.98445	0.37531	0.00019229	3.1403	0.0016089	3.5156	0.0018012	512.6701098539359	54.347	0.18602	54.15	54.06	54.246	-0.19739					7	4	2	0	0	0	0.024896	1	5757	5757		3.4087	1.8857	1	112910			43569	13934	30106	30157	49052	49052					0.2388197057250636
LLLPLRVM	8	Unmodified	_LLLPLRVM_					0	0	0		ENST00000454079.5_1_3:50004874-50005063:+|nuORF	ENST00000454079.5_1_3:50004874-50005063:+|nuORF	ENST00000454079.5_1_3:50004874-50005063:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7734069824219	2	477.812073	953.609594	-0.015553	-7.4313E-06	4.2736	0.002042	4.2581	0.0020346	477.8139352900048	46.946	0.23941	46.677	46.561	46.801	-0.26939					8	6	2	0	0	0	0.027866	1	4529	4529		20.482	1.1219	1	136230			43570	14561	30107	30158	49053	49053					0.13093359715549013
LLLPMFPI	8	Unmodified	_LLLPMFPI_					0	0	0			REV__nc|ENSG00000079337|O95398-3|RAPGEF3;REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2878723144531	2	472.2879	942.561247	0.48131	0.00022732	-1.1	-0.00051954	-0.61873	-0.00029222	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.9599	1	11771	11771		43.626	0	1	42478000	+		43571	20635;23640	30108	30159	49054	49054					0.0876686607564352
LLLPPKLLVVL	11	Unmodified	_LLLPPKLLVVL_					0	0	0			REV__CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	REV__CD300E|p.L182P|1|0.41|ENSG00000186407|chr17:74612726-74612726|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.58746337890625	3	406.624699	1216.85227	-0.17269	-7.0218E-05	-3.6702	-0.0014924	-3.8429	-0.0015626	406.62331817269893	25.42	0.4163	25.193	25.018	25.434	-0.22683					15	9	2	0	0	0	0.024888	1	1234	1234		3.2113	0	1	103420	+		43572	19274	30109	30160	49055	49055					0.2525150799237963
LLLPPLSP	8	Unmodified	_LLLPPLSP_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	REV__ENST00000452841.1_1_13:19467552-19468185:-|nuORF;REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.2388916015625	2	425.275847	848.537141	-0.15241	-6.4818E-05	-3.3701	-0.0014332	-3.5225	-0.001498	425.2744162774087	22.068	0.42742	21.877	21.662	22.089	-0.19072					14	8	2	0	0	0	0.027866	1	733	733		4.3163	2.8514	1	82633			43573	28692;32740	30110	30161	49056	49056					0.10681348913624333
LLLPPPCV	8	Unmodified	_LLLPPPCV_					0	0	0			REV__nc|ENSG00000188199|A6NNL0-2|NUTM2B	REV__nc|ENSG00000188199|A6NNL0-2|NUTM2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2459411621094	2	426.2566	850.498647	0.093575	3.9887E-05	-0.045367	-1.9338E-05	0.048208	2.0549E-05	426.2566592492484	86.753	0.12744	86.753	86.647	86.775	0					4	2	2	0	0	0	0.027866	1	10898	10898		16.705	6.5202	1	51315	+		43574	27711	30111	30162	49057	49057					0.0674172000743738
LLLPPPLPL	9	Unmodified	_LLLPPPLPL_					0	0	0		ENST00000369603.9_1_10:112063289-112064608:-|nuORF	ENST00000369603.9_1_10:112063289-112064608:-|nuORF	ENST00000369603.9_1_10:112063289-112064608:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7840881347656	2	486.828246	971.64194	-0.063956	-3.1136E-05	-0.14803	-7.2063E-05	-0.21198	-0.0001032	486.8282156181635	100.88	0.25561	100.88	100.73	100.99	0					9	5	2	0	0	0	0.024475	1	12912	12912		21.702	0	1	53846			43575	12930	30112	30163	49058	49058					0.15498470390184593
LLLPPTES	8	Unmodified	_LLLPPTES_					0	0	0		nc|ENSG00000134121|O00533|CHL1;ENSG00000134121|ENST00000256509|CHL1	nc|ENSG00000134121|O00533|CHL1	nc|ENSG00000134121|O00533|CHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.26934814453125	2	435.252569	868.490584	-0.13094	-5.6991E-05	-3.0055	-0.0013082	-3.1365	-0.0013652	435.2511130053601	23.662	0.78828	23.662	23.206	23.994	0					28	18	2	0	0	0	0.027866	1	912	912		28.254	13.59	1	341660			43576	4757	30113	30164	49059	49059					0.0510786429166501
LLLPQPLHQEG	11	Unmodified	_LLLPQPLHQEG_					0	0	0			REV__ENSG00000119283|ENST00000366653|TRIM67	REV__ENSG00000119283|ENST00000366653|TRIM67	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2303771972656	3	415.571434	1243.69247	0.12426	5.1639E-05	-2.806	-0.0011661	-2.6817	-0.0011145	415.5703434007113	25.912	0.43187	25.912	25.611	26.043	0					15	9	2	0	0	0	0.024772	1	1279	1279		26.063	6.8007	1	55278	+		43577	22446	30114	30165	49060	49060					0.0803734797721063
LLLPRVSPRA	10	Unmodified	_LLLPRVSPRA_					0	0	0			REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF;REV__ENSG00000101974|ENST00000682941|ATP11C	REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2698974609375	2	561.361308	1120.70806	-0.25675	-0.00014413	3.8995	0.002189	3.6428	0.0020449	561.3637499725936	26.304	0.20556	26.136	26.019	26.224	-0.16816					9	5	2	0	0	0	0.03519	1	1341	1341		54.776	33.829	1	101200	+		43578	32860;21272	30115	30166	49061	49061					0.15253679284933241
LLLPSFPSQN	10	Unmodified	_LLLPSFPSQN_					0	0	0		chr1:117606153-117622842|430|13.77|0.01|11.03|+|1|TENT5C,TENT5C|1;ENST00000369448.3_1_1:118148719-118165488:+|nuORF	chr1:117606153-117622842|430|13.77|0.01|11.03|+|1|TENT5C,TENT5C|1	chr1:117606153-117622842|430|13.77|0.01|11.03|+|1|TENT5C,TENT5C|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.3101196289062	2	558.308406	1114.60226	-0.25322	-0.00014137	0.52937	0.00029555	0.27616	0.00015418	558.3087596379827	66.73	0.80649	66.73	66.519	67.326	0					44	19	4	0	0	0	0.48123	1	7934	7934		90.37	0	1	2511400			43579	270	30116	30167	49062	49062					0.04954298648817712
LLLPSVVRW	9	Unmodified	_LLLPSVVRW_					0	0	0			REV__ENSG00000164363|ENST00000324642|SLC6A18	REV__ENSG00000164363|ENST00000324642|SLC6A18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.843505859375	2	541.839677	1081.6648	4.2823	0.0023203	1.9954	0.0010812	6.2778	0.0034015	541.8408574415744	17.81	0.48199	17.87	17.569	18.051	0.06036					24	11	3	0	0	0	1.0101	1	181	181		18.324	0.95945	1	63187	+		43580	25747	30117	30168	49063	49063					0.1272348950765263
LLLPTPSA	8	Unmodified	_LLLPTPSA_					0	0	0			REV__ENST00000569143.1_1_16:777475-778030:+|nuORF	REV__ENST00000569143.1_1_16:777475-778030:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2490539550781	2	406.249829	810.485105	0.91381	0.00037124	-4.0137	-0.0016306	-3.0999	-0.0012593	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0572	3	10731	10731;10767;10779		28.254	0	1	86727000	+		43581	35365	30118	30169	49064;49065;49066	49064					0.07228185499843676
LLLPTVLRI	9	Unmodified	_LLLPTVLRI_					0	0	0			REV__ENST00000575643.1_1_17:4700983-4701328:+|nuORF	REV__ENST00000575643.1_1_17:4700983-4701328:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.357421875	2	519.357702	1036.70085	0.34456	0.00017895	-0.28099	-0.00014594	0.063564	3.3012E-05	519.3574278250842	82.317	1.1227	82.136	81.856	82.979	-0.18079					63	25	4	0	0	0	0.27161	1	9913	9913		79.451	7.5735	1	1136600	+		43582	35462	30119	30170	49067	49067					0.18396946684492832
LLLPVLRDA	9	Unmodified	_LLLPVLRDA_					0	0	0		B3GALT6|p.A124V|1|0.43|ENSG00000176022|chr1:1232649-1232649|C/T|missense_variant	B3GALT6|p.A124V|1|0.43|ENSG00000176022|chr1:1232649-1232649|C/T|missense_variant	B3GALT6|p.A124V|1|0.43|ENSG00000176022|chr1:1232649-1232649|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.30517578125	2	505.32386	1008.63317	-0.38578	-0.00019495	-0.02556	-1.2916E-05	-0.41134	-0.00020786	505.32378405710045	69.458	0.54495	69.473	69.209	69.754	0.015121					24	13	3	0	0	0	0.023635	1	8301	8301		76.774	7.1465	1	209370			43583	172	30120	30171	49068	49068					0.12919496753693238
LLLPVVPAPL	10	Unmodified	_LLLPVVPAPL_					0	0	0		ENST00000406420.7_1_2:24239147-24246476:+|nuORF	ENST00000406420.7_1_2:24239147-24246476:+|nuORF	ENST00000406420.7_1_2:24239147-24246476:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.31396484375	2	516.346803	1030.67905	0.3113	0.00016074	1.1963	0.0006177	1.5076	0.00077844	516.3478786221368	97.909	0.29833	97.919	97.64	97.938	0.010231					12	6	3	0	0	0	0.03519	1	12429	12429		12.959	0	1	83681			43584	13732	30121	30172	49069	49069					0.16494141935936568
LLLQARAATPD	11	Unmodified	_LLLQARAATPD_					0	0	0		SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|1|1|sense	SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|1|1|sense	SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|1|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.8377075195312	2	584.837862	1167.66117	-1.6075	-0.00094015	1.0139	0.00059297	-0.59364	-0.00034718	584.8384827619993	52.92	0.87505	52.92	52.634	53.509	0					75	23	5	0	0	0	0.36442	1	5702	5702		85.161	2.9203	1	7466100			43585	38005	30122	30173	49070	49070					0.08404774943119264
LLLQGSTEV	9	Unmodified	_LLLQGSTEV_					0	0	0		ENST00000443548.1_1:143357063-143465436:-|nuORF	ENST00000443548.1_1:143357063-143465436:-|nuORF	ENST00000443548.1_1:143357063-143465436:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	480.274032	958.533512	-0.19271	-9.2555E-05	1.1327	0.000544	0.93997	0.00045144	480.27446689770204	48.936	0.53593	48.783	48.575	49.111	-0.15277					22	14	2	0	0	0	0.024354	1	4999	4999		23.042	0	1	699000			43586	14400	30123	30174	49071	49071					0.052586343491157095
LLLQKLRDD	9	Unmodified	_LLLQKLRDD_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.3179321289062	2	557.334956	1112.65536	-0.11698	-6.5199E-05	-3.6248	-0.0020202	-3.7418	-0.0020854	557.3328933795688	69.799	0.24404	69.811	69.668	69.912	0.012421					7	5	2	0	0	0	0.024381	1	8333	8333		29.15	3.6994	1	104510			43587	7208	30124	30175	49072	49072					0.1035367643146401
LLLQKSLI	8	Unmodified	_LLLQKSLI_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.31561279296875	2	464.315503	926.616454	-0.05163	-2.3972E-05	0.17651	8.1958E-05	0.12488	5.7986E-05	464.3154475859254	61.24	0.6986	61.034	60.81	61.509	-0.20599					37	16	3	0	0	0	0.24207	1	6849	6849		133.47	0	1	1430800	+		43588	23735	30125	30176	49073	49073					0.15020995867757847
LLLQKSLI	8	Unmodified	_LLLQKSLI_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.31549072265625	2	464.315503	926.616454	-0.85873	-0.00039872	0.94483	0.0004387	0.0861	3.9977E-05	464.3157970359227	61.163	0.82434	60.987	60.753	61.577	-0.1761					40	19	3	0	0	0	0.2917	1	6841	6841		115.46	0	1	1307800	+		43589	23735	30125	30176	49074	49074					0.15020995867757847
LLLQKSLI	8	Unmodified	_LLLQKSLI_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.3157958984375	2	464.315503	926.616454	-0.63726	-0.00029589	0.5915	0.00027464	-0.045759	-2.1246E-05	464.3156182600068	61.356	0.73743	61.098	60.809	61.547	-0.25725					42	17	4	0	0	0	0.10945	2	6847	6847;6861		157.99	0	1	1431800	+		43590	23735	30125	30176	49075;49076	49075					0.15020995867757847
LLLQKSLI	8	Unmodified	_LLLQKSLI_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	464.315503	926.616454	-0.05163	-2.3972E-05	0.17651	8.1958E-05	0.12488	5.7986E-05	464.3154475859254	61.24	0.6986	61.034	60.81	61.509	-0.20599	-0.0057415	-0.00035314	NaN	157.99	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1430800	+		43591	23735	30125	30176							0.15020995867757847
LLLQKSLI	8	Unmodified	_LLLQKSLI_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	464.315503	926.616454	-0.63726	-0.00029589	0.5915	0.00027464	-0.045759	-2.1246E-05	464.3156182600068	61.356	0.73743	61.098	60.809	61.547	-0.25725	0.058383	3.2229E-05	NaN	157.99	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1431800	+		43592	23735	30125	30176							0.15020995867757847
LLLQLGKNP	9	Unmodified	_LLLQLGKNP_					0	0	0			REV__nc|ENSG00000211786|A0A0B4J237|TRAV8-2	REV__nc|ENSG00000211786|A0A0B4J237|TRAV8-2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7894287109375	2	498.316035	994.617516	-0.020248	-1.009E-05	0.15608	7.7778E-05	0.13583	6.7688E-05	498.31584280365576	68.889	1.1492	68.889	68.56	69.71	0					44	29	2	0	0	0	0.024436	1	8228	8228		30.504	7.4612	1	752220	+		43593	37108	30126	30177	49077	49077					0.11999210236672297
LLLQLLLLQDS	11	Unmodified	_LLLQLLLLQDS_					0	0	0		ENST00000484016.1_1_12:56226082-56226935:+|nuORF	ENST00000484016.1_1_12:56226082-56226935:+|nuORF	ENST00000484016.1_1_12:56226082-56226935:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	635.3878173828125	2	634.894846	1267.77514	-0.88559	-0.00056226	-2.9011	-0.0018419	-3.7867	-0.0024042	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	0.99553	1	13057	13057		37.812	9.73	1	1402800			43594	15293	30127	30178	49078	49078					0.15196244985395424
LLLQLYHL	8	Unmodified	_LLLQLYHL_					0	0	0		ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.33349609375	2	506.813128	1011.6117	0.11203	5.6776E-05	0.28638	0.00014514	0.3984	0.00020191	506.81287369167165	80.535	0.48087	80.297	80.206	80.686	-0.23784					13	11	2	0	0	0	0.027866	1	9644	9644		57.453	0	1	98884			43595	15451	30128	30179	49079	49079					0.1063611172498895
LLLQPGVEM	9	Unmodified	_LLLQPGVEM_					0	0	0			REV__ENST00000486524.1_1_16:3650978-3651206:-|nuORF	REV__ENST00000486524.1_1_16:3650978-3651206:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2833557128906	2	500.280803	998.547053	-0.79341	-0.00039693	3.5968	0.0017994	2.8033	0.0014025	500.28250524748483	37.833	0.73566	37.865	37.6	38.336	0.032272					66	20	5	0	0	0	0.35646	1	3074	3074		68.787	12.066	1	2845600	+		43596	28070	30129	30180	49080	49080					0.04772168856698045
LLLQPWET	8	Unmodified	_LLLQPWET_					0	0	0		nc|ENSG00000124159|O95460-3|MATN4;nc|ENSG00000124159|O95460|MATN4;nc|ENSG00000124159|O95460-4|MATN4;ENSG00000124159|ENST00000372756|MATN4	nc|ENSG00000124159|O95460-3|MATN4	nc|ENSG00000124159|O95460-3|MATN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.30780029296875	2	500.279118	998.543683	0.25584	0.00012799	-3.5421	-0.001772	-3.2862	-0.001644	500.7784918403727	72.868	1.1075	72.878	72.371	73.479	0.0096512					54	27	3	0	0	0	0.027866	1	8807	8807		44.531	26.207	1	237440			43597	18236	30130	30181	49081	49081					0.04435242074339385
LLLQPWET	8	Unmodified	_LLLQPWET_					0	0	0		nc|ENSG00000124159|O95460-3|MATN4;nc|ENSG00000124159|O95460|MATN4;nc|ENSG00000124159|O95460-4|MATN4;ENSG00000124159|ENST00000372756|MATN4	nc|ENSG00000124159|O95460-3|MATN4	nc|ENSG00000124159|O95460-3|MATN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.279118	998.543683	-0.22062	-0.00011037	-1.9859	-0.0009935	-2.2065	-0.0011039	500.2784758059122	73.318	0.74423	73.041	72.582	73.327	-0.2769	0.08167	0.0010029	NaN	44.531	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214520			43598	18236	30130	30181							0.04435242074339385
LLLQQAQE	8	Unmodified	_LLLQQAQE_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.24951171875	2	471.766374	941.518196	0.54761	0.00025834	-0.6914	-0.00032618	-0.14379	-6.7836E-05	471.76609395993273	21	0.34307	20.804	20.681	21.024	-0.19577					10	6	2	0	0	0	0.027866	1	599	599		8.2313	0	1	82102			43599	5175	30131	30182	49082	49082					0.04509767551905952
LLLQQFCEV	9	Unmodified	_LLLQQFCEV_					0	0	0			REV__ENST00000391878.6_1_1:223968135-223968339:-|nuORF	REV__ENST00000391878.6_1_1:223968135-223968339:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2756958007812	2	546.791535	1091.56852	-1.1207	-0.00061278	3.1268	0.0017097	2.0061	0.0010969	546.7929754704257	77.903	0.74605	77.919	77.449	78.195	0.015915					36	17	3	0	0	0	0.024261	1	9576	9576		54.776	17.748	1	434880	+		43600	31585	30132	30183	49083	49083					0.026395538854103506
LLLQQGVE	8	Unmodified	_LLLQQGVE_					0	0	0		nc|ENSG00000106013|Q92527-2|ANKRD7;ENSG00000106013|ENST00000265224|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7789306640625	2	450.263468	898.512382	-0.12366	-5.5679E-05	0.24501	0.00011032	0.12135	5.464E-05	450.2633535999092	31.003	1.0835	30.762	30.248	31.332	-0.24109					59	26	3	0	0	0	0.027866	1	1973	1973		97.473	1.2823	1	615090			43601	18153	30133	30184	49084	49084					0.059066690402460154
LLLQQMQN	8	Unmodified	_LLLQQMQN_					0	0	0		ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.28741455078125	2	494.268227	986.521901	-0.54715	-0.00027044	-3.4468	-0.0017036	-3.9939	-0.0019741	494.26661428899513	29.632	0.40589	29.635	29.427	29.833	0.0031376					14	9	2	0	0	0	0.027866	1	1835	1835		42.474	1.9018	1	50330			43602	9333	30134	30185	49085	49085					0.028101140541139102
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.3262329101562	2	556.327131	1110.63971	-0.72663	-0.00040424	0.37651	0.00020946	-0.35012	-0.00019478	556.3272339381683	60.596	0.77835	60.596	60.366	61.144	0					52	20	3	0	0	0	0.014251	2	6977	6977;6995		200.96	0	1	3449700	+		43603	28935	30135	30186	49086;49087	49086					0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.3265991210938	2	556.327131	1110.63971	-0.87691	-0.00048785	0.60721	0.00033781	-0.2697	-0.00015004	556.3273735053386	60.872	0.74535	60.658	60.421	61.166	-0.2134					47	19	3	0	0	0	0.014251	2	6980	6980;6990		200.96	0	1	3913200	+		43604	28935	30135	30186	49088;49089	49088					0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.3270874023438	2	556.327131	1110.63971	-1.3147	-0.0007314	1.1697	0.00065075	-0.14496	-8.0645E-05	556.3276631945224	60.557	0.81925	60.636	60.356	61.175	0.078888					53	21	3	0	0	0	0.01672	1	6892	6892		200.96	0	1	3275800	+		43605	28935	30135	30186	49090	49090					0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	556.327131	1110.63971	-0.72663	-0.00040424	0.37651	0.00020946	-0.35012	-0.00019478	556.3272339381683	60.596	0.77835	60.596	60.366	61.144	0	-0.082917	-0.00040298	NaN	200.96	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3449700	+		43606	28935	30135	30186							0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	556.327131	1110.63971	-0.87691	-0.00048785	0.60721	0.00033781	-0.2697	-0.00015004	556.3273735053386	60.872	0.74535	60.658	60.421	61.166	-0.2134	-0.021034	-0.0001463	NaN	200.96	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3913200	+		43607	28935	30135	30186							0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	556.327131	1110.63971	-1.3147	-0.0007314	1.1697	0.00065075	-0.14496	-8.0645E-05	556.3276631945224	60.557	0.81925	60.636	60.356	61.175	0.078888	-0.042868	0.00047959	NaN	200.96	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3275800	+		43608	28935	30135	30186							0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.327131	1110.63971	-0.31592	-0.00017576	-0.074109	-4.1229E-05	-0.39003	-0.00021699	556.3268354901396	60.942	0.54604	60.736	60.504	61.05	-0.20599	0.056519	-0.00090437	NaN	200.96	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327460	+		43609	28935	30135	30186							0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	556.327131	1110.63971	-0.9498	-0.0005284	0.62212	0.0003461	-0.32768	-0.00018229	556.3272837394989	60.871	0.47097	60.694	60.443	60.914	-0.1761	0.015205	-0.00012971	NaN	200.96	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419770	+		43610	28935	30135	30186							0.08881389914427018
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	556.327131	1110.63971	-0.99371	-0.00055283	0.88147	0.00049038	-0.11224	-6.2444E-05	556.3273339722585	61.008	0.42712	60.754	60.544	60.971	-0.25373	0.075095	0.00015886	NaN	200.96	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354180	+		43611	28935	30135	30186							0.08881389914427018
LLLQQQTQS	9	Unmodified	_LLLQQQTQS_					0	0	0		ENST00000552338.5_1_12:50571813-50589811:-|nuORF	ENST00000552338.5_1_12:50571813-50589811:-|nuORF	ENST00000552338.5_1_12:50571813-50589811:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.7850952148438	2	529.795663	1057.57677	0.13695	7.2556E-05	-1.1822	-0.0006263	-1.0452	-0.00055374	529.7947721027914	43.413	0.47568	43.444	43.153	43.629	0.030823					25	12	3	0	0	0	0.024427	1	3972	3972		42.396	0	1	385660			43612	16622	30136	30187	49091	49091					0.05028824126384279
LLLQSSLTETN	11	Unmodified	_LLLQSSLTETN_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.8788146972656	3	406.890721	1217.65033	1.6961	0.00069012	2.2006	0.00089541	3.8967	0.0015855	406.89126635434303	20.12	0.18593	19.92	19.85	20.035	-0.2001					5	3	2	0	0	0	0.02476	1	508	508		20.315	0	1	13087			43613	8409	30137	30188	49092	49092					0.0502132777821771
LLLRAMVSP	9	Unmodified	_LLLRAMVSP_					0	0	0			REV__nc|ENSG00000196263|Q9BX82-2|ZNF471	REV__nc|ENSG00000196263|Q9BX82-2|ZNF471	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2769775390625	2	500.304613	998.594672	-0.20494	-0.00010253	-1.7639	-0.00088251	-1.9689	-0.00098504	500.3033266899882	60.941	0.875	61.012	60.831	61.706	0.071129					37	22	2	0	0	0	0.02435	1	6950	6950		60.972	8.6728	1	875960	+		43614	37050	30138	30189	49093	49093					0.09531867847545072
LLLRARRQWN	10	Unmodified	_LLLRARRQWN_					0	0	0			REV__ENSG00000164366|ENST00000296824|CCDC127	REV__ENSG00000164366|ENST00000296824|CCDC127	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.6009826660156	3	442.60195	1324.78402	0.19098	8.4528E-05	-2.8236	-0.0012497	-2.6326	-0.0011652	442.6009574074855	102.43	0.67945	102.3	102.03	102.71	-0.1293					50	15	4	0	0	0	1.1211	1	12731	12731		21.686	4.519	1	675520	+		43615	25748	30139	30190	49094	49094					0.1346207618507833
LLLRFGKQD	9	Unmodified	_LLLRFGKQD_					0	0	0			REV__ENSG00000142623|ENST00000375471|PADI1	REV__ENSG00000142623|ENST00000375471|PADI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.302001953125	2	545.324391	1088.63423	-0.72786	-0.00039692	-0.42246	-0.00023038	-1.1503	-0.0006273	545.323776371961	62.645	0.76435	62.708	62.442	63.207	0.062767					34	18	3	0	0	0	0.024447	1	7253	7253		40.778	0	1	695100	+		43616	24171	30140	30191	49095	49095					0.09345711122614375
LLLRGALL	8	Unmodified	_LLLRGALL_					0	0	0		nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.748046875	2	434.802563	867.590573	0.9521	0.00041397	-0.86064	-0.00037421	0.091458	3.9766E-05	434.8020758386229	65.777	0.53593	65.777	65.529	66.065	0					26	13	3	0	0	0	0.027866	1	7783	7783		7.6903	0	1	304760			43617	18552	30141	30192	49096	49096					0.15148146416129293
LLLRGHRRFHH	11	Unmodified	_LLLRGHRRFHH_					0	0	0		ENST00000282146.4_1_14:90528455-90650665:+|nuORF	ENST00000282146.4_1_14:90528455-90650665:+|nuORF	ENST00000282146.4_1_14:90528455-90650665:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2828369140625	3	481.284844	1440.8327	0.97727	0.00047034	-3.2768	-0.0015771	-2.2996	-0.0011067	481.283231723936	100.5	0.43654	100.37	100.13	100.56	-0.13364					18	11	2	0	0	0	1.1045	1	12466	12466		10.104	0.8921	1	211450			43618	11727	30142	30193	49097	49097					0.1299198954482108
LLLRKTNSD	9	Unmodified	_LLLRKTNSD_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;ENST00000552420.5_1_12:57870791-57873587:-|nuORF	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2823486328125	2	530.31148	1058.60841	-0.92257	-0.00048925	-0.14852	-7.8763E-05	-1.0711	-0.00056801	530.3117129852099	39.946	0.32277	39.969	39.84	40.162	0.023006					13	8	3	0	0	0	0.024495	1	3450	3450		26.693	0	1	110530			43619	3968	30143	30194	49098	49098					0.08144816880326289
LLLRLFLL	8	Unmodified	_LLLRLFLL_					0	0	0		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7894592285156	2	500.849513	999.684474	0.003488	1.7469E-06	3.4076	0.0017067	3.4111	0.0017084	500.8511547985058	92.9	0.25385	92.907	92.801	93.055	0.0077286					6	5	2	0	0	0	0.027866	1	11722	11722		15.636	0	1	19583			43620	7861	30144	30195	49099	49099					0.1846186551840674
LLLRLSVC	8	Unmodified	_LLLRLSVC_					0	0	0		ENST00000256682.8_1_12:49331189-49331324:-|nuORF	ENST00000256682.8_1_12:49331189-49331324:-|nuORF	ENST00000256682.8_1_12:49331189-49331324:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.787841796875	2	458.786056	915.557558	-0.24715	-0.00011339	2.6403	0.0012113	2.3932	0.001098	458.78724723277566	92.233	1.8673	92.224	91.752	93.619	-0.0082932					114	44	3	0	0	0	1.0133	1	11699	11699		35.201	5.3592	1	30570000			43621	11399	30145	30196	49100	49100					0.09640196301768356
LLLRLSVC	8	Unmodified	_LLLRLSVC_					0	0	0		ENST00000256682.8_1_12:49331189-49331324:-|nuORF	ENST00000256682.8_1_12:49331189-49331324:-|nuORF	ENST00000256682.8_1_12:49331189-49331324:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.78778076171875	2	458.786056	915.557558	-0.2269	-0.0001041	2.7104	0.0012435	2.4835	0.0011394	458.7872764164579	92.323	1.6929	92.2	91.76	93.453	-0.12242					146	39	6	0	0	0	1.0572	1	11400	11400		28.254	2.8041	1	20312000			43622	11399	30145	30196	49101	49101					0.09640196301768356
LLLRMVEIY	9	Oxidation (M)	_LLLRM(Oxidation (M))VEIY_		LLLRM(1)VEIY		LLLRM(61)VEIY	0	0	1			REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.3338623046875	2	583.33611	1164.65767	0.24629	0.00014367	-3.633	-0.0021193	-3.3868	-0.0019756	583.3338213982425	84.939	1.3819	84.736	84.418	85.799	-0.20329					81	32	4	0	0	0	0.4752	1	10276	10276		60.972	7.6205	1	1756100	+		43623	22825	30146	30197	49102	49102		682			0.08192388844940979
LLLRMVEIY	9	Oxidation (M)	_LLLRM(Oxidation (M))VEIY_		LLLRM(1)VEIY		LLLRM(94)VEIY	0	0	1			REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.3340454101562	2	583.33611	1164.65767	0.021884	1.2766E-05	-3.275	-0.0019104	-3.2531	-0.0018977	583.3340233413905	84.792	1.5034	84.633	84.321	85.825	-0.15869					88	35	4	0	0	0	0.17455	1	10285	10285		94.006	19.751	1	2075600	+		43624	22825	30146	30197	49103	49103		682			0.08192388844940979
LLLRMVEIY	9	Oxidation (M)	_LLLRM(Oxidation (M))VEIY_		LLLRM(1)VEIY		LLLRM(110)VEIY	0	0	1			REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.3341064453125	2	583.33611	1164.65767	0.020249	1.1812E-05	-3.4332	-0.0020027	-3.4129	-0.0019909	583.3339232583728	84.857	1.6404	84.719	84.365	86.005	-0.13789					89	38	4	0	0	0	0.11848	1	10269	10269		106.42	16.045	1	1695700	+		43625	22825	30146	30197	49104	49104		682			0.08192388844940979
LLLRMVEIY	9	Oxidation (M)	_LLLRM(Oxidation (M))VEIY_					0	0	1			REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	583.33611	1164.65767	0.24629	0.00014367	-3.633	-0.0021193	-3.3868	-0.0019756	583.3338213982425	84.939	1.3819	84.736	84.418	85.799	-0.20329	0.040067	-0.00021515	NaN	106.42	81	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1756100	+		43626	22825	30146	30197				682			0.08192388844940979
LLLRMVEIY	9	Oxidation (M)	_LLLRM(Oxidation (M))VEIY_					0	0	1			REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	583.33611	1164.65767	0.020249	1.1812E-05	-3.4332	-0.0020027	-3.4129	-0.0019909	583.3339232583728	84.857	1.6404	84.719	84.365	86.005	-0.13789	0.022971	1.8018E-05	NaN	106.42	89	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1695700	+		43627	22825	30146	30197				682			0.08192388844940979
LLLRPGSCL	9	Unmodified	_LLLRPGSCL_					0	0	0			REV__ENSG00000141505|ENST00000269299|ASGR1	REV__ENSG00000141505|ENST00000269299|ASGR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.764892578125	2	486.288963	970.563372	-0.27403	-0.00013326	4.2653	0.0020742	3.9913	0.0019409	486.29096623778696	19.734	0.62275	19.616	19.2	19.823	-0.11872					16	12	2	0	0	0	0.024381	1	453	453		45.952	23.992	1	47333	+		43628	24097	30147	30198	49105	49105					0.07691294813446348
LLLRPGSCL	9	Unmodified	_LLLRPGSCL_					0	0	0			REV__ENSG00000141505|ENST00000269299|ASGR1	REV__ENSG00000141505|ENST00000269299|ASGR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.288963	970.563372	1.8322	0.00089096	2.4305	0.0011819	4.2627	0.0020729	486.2900261462073	19.645	0.67748	19.711	19.389	20.067	0.066195	0.11362	-0.0008271	NaN	45.952	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55830	+		43629	24097	30147	30198							0.07691294813446348
LLLRPGSCL	9	Unmodified	_LLLRPGSCL_					0	0	0			REV__ENSG00000141505|ENST00000269299|ASGR1	REV__ENSG00000141505|ENST00000269299|ASGR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.288963	970.563372	0.13513	6.5714E-05	1.5887	0.00077257	1.7238	0.00083828	486.2902094242447	19.69	0.34454	19.529	19.331	19.676	-0.16079	-0.0684	-0.0016458	NaN	45.952	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28880	+		43630	24097	30147	30198							0.07691294813446348
LLLRPRMTLL	10	Unmodified	_LLLRPRMTLL_					0	0	0			REV__ENSG00000085465|ENST00000369732|OVGP1	REV__ENSG00000085465|ENST00000369732|OVGP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2469787597656	3	409.265288	1224.77403	0.53413	0.0002186	-2.6879	-0.0011	-2.1537	-0.00088144	409.26382454158926	37.682	0.2919	37.715	37.563	37.854	0.032269					12	7	3	0	0	0	0.03519	1	3056	3056		47.96	15.209	1	46889	+		43631	20751	30148	30199	49106	49106					0.17063752135504728
LLLRRLLPSM	10	Unmodified	_LLLRRLLPSM_					0	0	0			REV__nc|ENSG00000173511|P49765-2|VEGFB	REV__nc|ENSG00000173511|P49765-2|VEGFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.3869018554688	2	606.386468	1210.75838	-0.2035	-0.0001234	2.1889	0.0013273	1.9854	0.0012039	606.3875171274191	107.31	0.4583	107.31	106.98	107.44	-0.003479					32	14	3	0	0	0	1.1088	1	13738	13738		31.53	1.2121	1	193720	+		43632	26778	30149	30200	49107	49107					0.16143465618438313
LLLRSLSFN	9	Unmodified	_LLLRSLSFN_					0	0	0		ENST00000471771.5_1_13:28019229-28024035:-|nuORF	ENST00000471771.5_1_13:28019229-28024035:-|nuORF	ENST00000471771.5_1_13:28019229-28024035:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8173828125	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.92825	1	10866	10866		30.504	1.3541	1	4853400			43633	14966	30150	30201	49108	49108					0.09498308748334239
LLLRTKCRTY	10	Unmodified	_LLLRTKCRTY_					0	0	0		ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	MSMS	OPSCC_40_ClassI_Rep-3	6	633.8704223632812	2	633.871182	1265.72781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.071	1	94.919	94.419	95.419	-0.15186								0	0	0	0.74614	1	11713	11713		40.778	4.3314	1				43634	1592	30151	30202	49109	49109					0.10557687233404067
LLLRTSVI	8	Unmodified	_LLLRTSVI_					0	0	0		ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.80511474609375	2	457.805303	913.596052	0.66437	0.00030415	-0.42632	-0.00019517	0.23805	0.00010898	457.80493825630407	69.588	0.86778	69.295	69.01	69.878	-0.29291					52	21	4	0	0	0	0.53523	1	8354	8354		82.305	8.3303	1	1845100			43635	9570	30152	30203	49110	49110					0.1357982520794394
LLLRTSVI	8	Unmodified	_LLLRTSVI_					0	0	0		ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	457.805303	913.596052	0.18851	8.63E-05	-0.014962	-6.8497E-06	0.17355	7.945E-05	457.8051643966276	69.264	0.89714	69.264	68.977	69.874	0	-0.044055	-9.1302E-07	NaN	82.305	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2145400			43636	9570	30152	30203							0.1357982520794394
LLLRTSVI	8	Unmodified	_LLLRTSVI_					0	0	0		ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	ENSG00000186687|ENST00000379380|LYRM7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	457.805303	913.596052	-0.1164	-5.3289E-05	0.31648	0.00014489	0.20008	9.1599E-05	457.8053071483345	69.349	0.90129	69.364	69.053	69.955	0.015129	0.056603	0.00030256	NaN	82.305	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1407100			43637	9570	30152	30203							0.1357982520794394
LLLRVFTTN	9	Unmodified	_LLLRVFTTN_					0	0	0		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18;ENST00000485646.1_1_13:21714754-21715135:+|nuORF	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8267822265625	2	538.826766	1075.63898	-0.58398	-0.00031466	0.14991	8.0777E-05	-0.43407	-0.00023389	538.8267490736815	55.09	1.2157	54.884	54.502	55.718	-0.20613					83	33	4	0	0	0	0.45795	1	5861	5861		62.107	1.8135	1	7294600			43638	6137	30153	30204	49111	49111					0.10418595265377917
LLLRYKNL	8	Unmodified	_LLLRYKNL_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7481079101562	2	516.831852	1031.64915	0.0054919	2.8384E-06	-0.36476	-0.00018852	-0.35927	-0.00018568	516.8315065182575	64.074	0.84463	63.816	63.46	64.304	-0.25824					30	21	2	0	0	0	0.027866	1	7219	7219		40.573	7.057	1	93184	+		43639	20270	30154	30205	49112	49112					0.1345920299061163
LLLSELAQN	9	Unmodified	_LLLSELAQN_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.786865234375	2	500.787307	999.560061	0.35902	0.00017979	-1.2574	-0.0006297	-0.8984	-0.00044991	500.7855799705616	54.595	1.1426	54.693	54.077	55.22	0.098015					94	32	4	0	0	0	0.091713	2	5917	5906;5917		113.41	11.811	1	5169800			43640	9029	30155	30206	49113;49114	49114					0.060263232404167866
LLLSELAQN	9	Unmodified	_LLLSELAQN_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	500.787307	999.560061	-0.5145	-0.00025766	-5.2481	-0.0026282	-5.7626	-0.0028858	500.7840659844226	54.525	0.61375	54.525	54.144	54.757	0	-0.052344	-0.00067005	NaN	113.41	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2304400			43641	9029	30155	30206							0.060263232404167866
LLLSELAQN	9	Unmodified	_LLLSELAQN_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.787307	999.560061	-0.11531	-5.7745E-05	-5.5865	-0.0027977	-5.7019	-0.0028554	500.78396908630674	54.665	0.58961	54.515	54.156	54.745	-0.15036	-0.062798	-0.0010091	NaN	113.41	45	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2410500			43642	9029	30155	30206							0.060263232404167866
LLLSGMQLA	9	Unmodified	_LLLSGMQLA_					0	0	0		ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7871398925781	2	473.275521	944.536489	1.0325	0.00048866	-3.0628	-0.0014496	-2.0303	-0.0009609	473.2738175330989	87.223	1.2277	87.245	86.803	88.031	0.021263					42	29	2	0	0	0	0.024427	1	10916	10916		34.173	7.4796	1	70082			43643	7435	30156	30207	49115	49115					0.062001862022498244
LLLSHTSII	9	Unmodified	_LLLSHTSII_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.25555419921875	2	498.808042	995.601532	0.16221	8.0913E-05	-0.52635	-0.00026255	-0.36414	-0.00018163	498.80759890746737	71.555	0.6416	71.349	71.139	71.78	-0.20613					25	15	2	0	0	0	0.024412	1	8363	8363		40.573	0	1	279160	+		43644	24424	30157	30208	49116	49116					0.1035550399976728
LLLSHTSII	9	Unmodified	_LLLSHTSII_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.808042	995.601532	0.67736	0.00033787	-0.50934	-0.00025406	0.16802	8.3809E-05	498.80768552543157	71.472	1.1901	71.472	71.223	72.414	0	-0.036955	-0.00018322	NaN	40.573	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812240	+		43645	24424	30157	30208							0.1035550399976728
LLLSHTSII	9	Unmodified	_LLLSHTSII_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.808042	995.601532	0.4086	0.00020381	-0.36949	-0.00018431	0.039109	1.9508E-05	498.8077783092295	71.849	1.1045	71.56	71.313	72.418	-0.28857	0.051474	-4.3706E-05	NaN	40.573	59	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886560	+		43646	24424	30157	30208							0.1035550399976728
LLLSHTSII	9	Unmodified	_LLLSHTSII_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.808042	995.601532	0.37244	0.00018578	-0.13138	-6.5533E-05	0.24107	0.00012025	498.8078283151598	71.623	1.2108	71.633	71.319	72.53	0.010735	0.12453	0.00019384	NaN	40.573	60	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899920	+		43647	24424	30157	30208							0.1035550399976728
LLLSHVMDL	9	Oxidation (M)	_LLLSHVM(Oxidation (M))DL_		LLLSHVM(1)DL		LLLSHVM(74)DL	0	0	1			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.7927856445312	2	528.791535	1055.56852	-0.49371	-0.00026107	-1.0991	-0.00058121	-1.5928	-0.00084228	528.790723629104	104.68	0.77525	104.68	104.38	105.15	0					46	24	3	0	0	0	0.31247	1	13417	13417		73.975	31.5	1	393470	+		43648	29207	30158	30209	49117	49117		855			0.04295553885413028
LLLSHVMDL	9	Oxidation (M)	_LLLSHVM(Oxidation (M))DL_		LLLSHVM(1)DL		LLLSHVM(82)DL	0	0	1			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.7907104492188	2	528.791535	1055.56852	0.12268	6.4873E-05	-1.7887	-0.00094584	-1.666	-0.00088097	528.7904229333961	104.71	0.69019	104.71	104.43	105.12	-0.0015945					44	21	3	0	0	0	0.25032	1	13371	13371		82.305	34.389	1	375930	+		43649	29207	30158	30209	49118	49118		855			0.04295553885413028
LLLSHVMDL	9	Oxidation (M)	_LLLSHVM(Oxidation (M))DL_		LLLSHVM(1)DL		LLLSHVM(51)DL	0	0	1			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7904052734375	2	528.791535	1055.56852	0.0069581	3.6794E-06	-2.2907	-0.0012113	-2.2837	-0.0012076	528.7902932408939	104.52	0.86827	104.39	104.1	104.97	-0.1256					50	24	3	0	0	0	0.62163	2	13018	13018;13038		51.335	7.1458	1	991500	+		43650	29207	30158	30209	49119;49120	49119		855			0.04295553885413028
LLLSILGMN	9	Unmodified	_LLLSILGMN_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2933349609375	2	487.291171	972.567789	-0.48665	-0.00023714	4.4592	0.0021729	3.9725	0.0019358	487.2932372320569	90.024	1.5907	89.899	89.122	90.712	-0.12512					97	37	4	0	0	0	0.72875	1	11008	11008		44.117	6.9577	1	2379400			43651	8462	30159	30210	49121	49121					0.08040759236371287
LLLSLACAAV	10	Unmodified	_LLLSLACAAV_					0	0	0			REV__ENST00000035307.6_1_7:150930120-150930237:+|nuORF	REV__ENST00000035307.6_1_7:150930120-150930237:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2935791015625	2	487.291171	972.567789	-0.23305	-0.00011356	3.2904	0.0016034	3.0573	0.0014898	487.292578243981	89.93	1.0289	89.944	89.674	90.702	0.013443					74	24	4	0	0	0	1.0665	1	11318	11318		37.159	1.9584	1	3269400	+		43652	29262	30160	30211	49122	49122					0.08040759236348549
LLLSLCLPSL	10	Unmodified	_LLLSLCLPSL_					0	0	0			REV__ENST00000495054.1_1_1:149903225-149903459:-|nuORF	REV__ENST00000495054.1_1_1:149903225-149903459:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2386474609375	2	536.327753	1070.64095	-0.33674	-0.0001806	3.1565	0.0016929	2.8197	0.0015123	536.329149051659	60.125	0.70473	60.125	59.914	60.619	0					41	18	3	0	0	0	0.03519	1	6928	6928		104.75	22.506	1	1009800	+		43653	33789	30161	30212	49123	49123					0.10845887958976164
LLLSLCLPSL	10	Unmodified	_LLLSLCLPSL_					0	0	0			REV__ENST00000495054.1_1_1:149903225-149903459:-|nuORF	REV__ENST00000495054.1_1_1:149903225-149903459:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2384643554688	2	536.327753	1070.64095	-0.93273	-0.00050025	3.3396	0.0017911	2.4068	0.0012909	536.3293146289512	60.375	0.75752	60.162	59.924	60.682	-0.21339					43	19	3	0	0	0	0.03519	1	6983	6983		124.59	25.219	1	746500	+		43654	33789	30161	30212	49124	49124					0.10845887958976164
LLLSLKTK	8	Unmodified	_LLLSLKTK_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2478942871094	2	458.315503	914.616454	0.084574	3.8762E-05	-0.38963	-0.00017857	-0.30505	-0.00013981	458.31529039977454	43.979	0.28936	44.016	43.853	44.142	0.0369					13	7	2	0	0	0	0.027866	1	4087	4087		11.511	0	1	134530	+		43655	24301	30162	30213	49125	49125					0.15572995867773898
LLLSLLEQD	9	Unmodified	_LLLSLLEQD_					0	0	0			REV__ENST00000485694.1_1_2:15307174-15319276:-|nuORF;REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.313232421875	2	522.30279	1042.59103	-0.53063	-0.00027715	0.96249	0.00050271	0.43185	0.00022556	522.3031781328929	91.854	0.55078	91.845	91.494	92.045	-0.0082932					13	12	2	0	0	0	0.024262	1	11568	11568		57.811	13.694	1	48931	+		43656	24796;33565	30163	30214	49126	49126					0.07143476554688277
LLLSLRNIP	9	Unmodified	_LLLSLRNIP_					0	0	0			REV__nc|ENSG00000121577|Q9HBU9|POPDC2	REV__nc|ENSG00000121577|Q9HBU9|POPDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7670288085938	2	519.837134	1037.65972	-0.66017	-0.00034318	-0.31924	-0.00016595	-0.97941	-0.00050913	519.8368074955326	47.995	0.44633	47.897	47.667	48.114	-0.097553					17	11	2	0	0	0	0.024457	1	4711	4711		45.952	0	1	156200	+		43657	36616	30164	30215	49127	49127					0.1423918564505584
LLLSMLLY	8	Oxidation (M)	_LLLSM(Oxidation (M))LLY_		LLLSM(1)LLY		LLLSM(96)LLY	0	0	1		TRIM3|p.V402M|1|0.27|ENSG00000110171|chr11:6456522-6456522|C/T|missense_variant	TRIM3|p.V402M|1|0.27|ENSG00000110171|chr11:6456522-6456522|C/T|missense_variant	TRIM3|p.V402M|1|0.27|ENSG00000110171|chr11:6456522-6456522|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.22821044921875	2	491.288097	980.561641	0.089569	4.4004E-05	3.7867	0.0018604	3.8763	0.0019044	491.28982166923504	62.02	0.9052	61.763	61.464	62.369	-0.25725					50	22	4	0	0	0	0.027866	1	6981	6981		96.048	18.104	1	3614800			43658	38105	30165	30216	49128	49128		994			0.07058241004835963
LLLSPRALL	9	Unmodified	_LLLSPRALL_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3341064453125	2	498.334227	994.653902	0.4612	0.00022983	-0.92052	-0.00045872	-0.45932	-0.00022889	498.33365604942816	74.84	1.0355	74.84	74.551	75.586	0					79	26	4	0	0	0	0.59099	1	9146	9146		53.351	0	1	5041300	+		43659	21597	30166	30217	49129	49129					0.15636087133384535
LLLSQAVPS	9	Unmodified	_LLLSQAVPS_					0	0	0			REV__ENST00000371477.3_1_6:44355409-44355517:+|nuORF	REV__ENST00000371477.3_1_6:44355409-44355517:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.2794494628906	2	464.279118	926.543683	-1.6618	-0.00077153	0.96577	0.00044839	-0.69601	-0.00032314	464.2795676442103	51.871	1.8781	51.602	50.634	52.513	-0.26903					152	49	6	0	0	0	0.15366	1	5393	5393		98.629	10.875	1	31385000	+		43660	31163	30167	30218	49130	49130					0.07747242074333371
LLLSQLVNL	9	Unmodified	_LLLSQLVNL_					0	0	0			REV__ENSG00000018280|ENST00000233202|SLC11A1	REV__ENSG00000018280|ENST00000233202|SLC11A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.8228454589844	2	506.823692	1011.63283	-0.22357	-0.00011331	0.40933	0.00020746	0.18576	9.4148E-05	506.82376476733606	60.476	0.99355	60.27	59.975	60.968	-0.20599					52	24	4	0	0	0	0.28753	1	6732	6732		77.318	0.54344	1	2144500	+		43661	19979	30168	30219	49131	49131					0.12748077033870686
LLLSQLVNL	9	Unmodified	_LLLSQLVNL_					0	0	0			REV__ENSG00000018280|ENST00000233202|SLC11A1	REV__ENSG00000018280|ENST00000233202|SLC11A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.8226318359375	2	506.823692	1011.63283	-0.81002	-0.00041054	0.89079	0.00045147	0.080773	4.0937E-05	506.8240199283193	60.391	0.7917	60.215	59.922	60.714	-0.1761					51	19	4	0	0	0	0.2101	1	6720	6720		87.696	10.922	1	2464900	+		43662	19979	30168	30219	49132	49132					0.12748077033870686
LLLSQLVNL	9	Unmodified	_LLLSQLVNL_					0	0	0			REV__ENSG00000018280|ENST00000233202|SLC11A1	REV__ENSG00000018280|ENST00000233202|SLC11A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.8236083984375	2	506.823692	1011.63283	-0.73543	-0.00037273	0.71123	0.00036047	-0.024198	-1.2264E-05	506.8239055099606	60.55	0.83784	60.296	60.014	60.852	-0.25374					53	20	4	0	0	0	0.22902	2	6733	6723;6733		85.161	2.5279	1	1803900	+		43663	19979	30168	30219	49133;49134	49134					0.12748077033870686
LLLSSKMIL	9	Unmodified	_LLLSSKMIL_					0	0	0			REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF	REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.32342529296875	2	509.322471	1016.63039	-0.38613	-0.00019667	0.83955	0.0004276	0.45342	0.00023094	509.3230779907955	78.386	1.6534	78.402	78.155	79.808	0.015907					70	39	5	0	0	0	0.16468	1	9642	9642		96.19	8.4361	1	3480300	+		43664	33004	30169	30220	49135	49135					0.1227390530456205
LLLSSKMIL	9	Unmodified	_LLLSSKMIL_					0	0	0			REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF	REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.322471	1016.63039	-0.19565	-9.965E-05	-0.6886	-0.00035072	-0.88425	-0.00045037	509.3219815336545	78.432	0.8609	78.178	77.869	78.729	-0.25471	-0.084544	-0.00050299	NaN	96.19	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	708770	+		43665	33004	30169	30220							0.1227390530456205
LLLSSKMIL	9	Unmodified	_LLLSSKMIL_					0	0	0			REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF	REV__ENST00000465486.6_1_9:134065776-134072618:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	509.322471	1016.63039	0.23757	0.000121	-0.96108	-0.0004895	-0.7235	-0.0003685	509.32184753805416	78.344	0.5123	78.112	77.877	78.389	-0.23141	-0.15017	-0.00078056	NaN	96.19	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1047800	+		43666	33004	30169	30220							0.1227390530456205
LLLSSSCPFL	10	Carbamidomethyl (C)	_LLLSSSC(Carbamidomethyl (C))PFL_	LLLSSSC(1)PFL		LLLSSSC(53)PFL		0	1	0			REV__ENST00000360000.8_1_X:102508893-102510067:-|nuORF	REV__ENST00000360000.8_1_X:102508893-102510067:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.8027954101562	2	568.804642	1135.59473	0.89057	0.00050656	-3.4194	-0.001945	-2.5288	-0.0014384	568.8024520625137	97.226	0.99213	97.09	96.746	97.738	-0.1367					49	21	3	0	0	0	0.91051	1	12028	12028		53.351	8.9743	1	226450	+		43667	30894	30170	30221	49136	49136	403				0.03235823056888876
LLLSTRAAQ	9	Unmodified	_LLLSTRAAQ_					0	0	0			REV__ENST00000497700.1_1_15:44068610-44069126:-|nuORF	REV__ENST00000497700.1_1_15:44068610-44069126:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7774353027344	2	486.795466	971.57638	-0.82338	-0.00040082	-3.4051	-0.0016576	-4.2285	-0.0020584	486.7933248659943	56.459	0.44625	56.557	56.435	56.881	0.097893					23	12	3	0	0	0	0.024367	1	6214	6214		52.937	6.9645	1	261820	+		43668	23015	30171	30222	49137	49137					0.08945449197176458
LLLSVRRR	8	Unmodified	_LLLSVRRR_					0	0	0			REV__ENST00000472612.5_1_1:114268399-114280846:-|nuORF	REV__ENST00000472612.5_1_1:114268399-114280846:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8110046386719	2	506.840542	1011.66653	-0.16623	-8.425E-05	-2.0638	-0.001046	-2.2301	-0.0011303	506.8407758080675	54.664	0.13257	54.513	54.442	54.574	-0.15036					5	3	2	0	0	0	0.027866	1	5965	5965		8.8223	0.59103	1	58518	+		43669	33211	30172	30223	49138	49138					0.16116543316275056
LLLTADRSGSV	11	Unmodified	_LLLTADRSGSV_					0	0	0			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.3221435546875	2	566.322045	1130.62954	0.070965	4.0189E-05	0.26956	0.00015266	0.34052	0.00019285	566.322303110478	105.93	0.62749	105.81	105.51	106.13	-0.12381					61	22	4	0	0	0	0.96309	1	13191	13191		45.022	13.067	1	622550	+		43670	26721	30173	30224	49139	49139					0.06944782189179932
LLLTAGQI	8	Unmodified	_LLLTAGQI_					0	0	0			REV__ENSG00000139370|ENST00000266771|SLC15A4	REV__ENSG00000139370|ENST00000266771|SLC15A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7615966796875	2	414.763104	827.511654	-0.33499	-0.00013894	-3.3986	-0.0014096	-3.7336	-0.0015486	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	1.0133	1	10682	10682		35.201	1.6851	1	36536000	+		43671	23940	30174	30225	49140	49140					0.09099874391188223
LLLTAPSP	8	Unmodified	_LLLTAPSP_					0	0	0		ENST00000368069.7_1_1:160259783-160259930:-|nuORF	ENST00000368069.7_1_1:160259783-160259930:-|nuORF	ENST00000368069.7_1_1:160259783-160259930:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.2487487792969	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0574	2	11013	11013;11037		21.702	1.2205	1	123310000			43672	12880	30175	30226	49141;49142	49141					0.07228185499855044
LLLTCFSEAM	10	Unmodified	_LLLTCFSEAM_					0	0	0		ENST00000528902.1_1_17:72957966-72959197:-|nuORF;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1	ENST00000528902.1_1_17:72957966-72959197:-|nuORF	ENST00000528902.1_1_17:72957966-72959197:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2771606445312	2	564.277403	1126.54025	0.18604	0.00010498	0.034205	1.9301E-05	0.22024	0.00012428	564.2772344326279	90.838	0.95221	90.699	90.407	91.359	-0.13942					49	22	3	0	0	0	0.75995	1	11134	11134		63.306	2.3343	1	2004000			43673	7745	30176	30227	49143	49143					-0.017955120861870455
LLLTDLSLL	9	Unmodified	_LLLTDLSLL_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8;ENST00000578252.1_1_18:29450325-29450937:-|nuORF	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7894592285156	2	500.818076	999.621598	-0.028289	-1.4168E-05	3.4562	0.0017309	3.4279	0.0017167	500.82183070307235	92.932	0.25314	92.939	92.844	93.097	0.0077209					8	5	2	0	0	0	0.024517	1	11722	11722		26.796	0	1	40554			43674	6343	30177	30228	49144	49144					0.12177254939717841
LLLTDVLL	8	Unmodified	_LLLTDVLL_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2748107910156	2	450.294236	898.57392	-0.36566	-0.00016465	1.5161	0.00068271	1.1505	0.00051806	450.2954695357107	92.172	0.59273	92.172	91.945	92.537	0					28	14	3	0	0	0	0.027866	1	11714	11714		8.8223	0	1	140880			43675	10574	30178	30229	49145	49145					0.12057600739535701
LLLTEELL	8	Unmodified	_LLLTEELL_					0	0	0			REV__ENST00000507834.3_1_4:86167470-86167848:+|nuORF	REV__ENST00000507834.3_1_4:86167470-86167848:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2878723144531	2	472.289151	942.563749	0.59467	0.00028086	-3.9523	-0.0018667	-3.3577	-0.0015858	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	1.0572	1	11990	11990		28.254	1.5614	1	51888000	+		43676	34056	30179	30230	49146	49146					0.0901699301429062
LLLTEELL	8	Unmodified	_LLLTEELL_					0	0	0			REV__ENST00000507834.3_1_4:86167470-86167848:+|nuORF	REV__ENST00000507834.3_1_4:86167470-86167848:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2878112792969	2	472.289151	942.563749	-0.12415	-5.8633E-05	-3.295	-0.0015562	-3.4191	-0.0016148	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	1.0574	1	11950	11950		26.796	1.3459	1	53299000	+		43677	34056	30179	30230	49147	49147					0.0901699301429062
LLLTGMLVGGI	11	Oxidation (M)	_LLLTGM(Oxidation (M))LVGGI_		LLLTGM(1)LVGGI		LLLTGM(120)LVGGI	0	0	1		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.8301391601562	2	551.83066	1101.64677	-0.58397	-0.00032225	-1.896	-0.0010463	-2.48	-0.0013685	551.8294810734367	102.89	2.2842	102.89	102.53	104.81	0					119	56	4	0	0	0	0.040064	3	13195	13173;13195;13208		124.59	21.821	1	4404900			43678	9393	30180	30231	49148;49149;49150	49149		391			0.10000986470640782
LLLTGMLVGGI	11	Oxidation (M)	_LLLTGM(Oxidation (M))LVGGI_		LLLTGM(1)LVGGI		LLLTGM(120)LVGGI	0	0	1		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8300170898438	2	551.83066	1101.64677	-0.43905	-0.00024228	-2.0573	-0.0011353	-2.4964	-0.0013776	551.8293845140449	102.8	2.3433	102.8	102.5	104.84	0.0054245					140	61	4	0	0	0	0.040064	2	13126	13126;13138		124.59	21.821	1	4472800			43679	9393	30180	30231	49151;49152	49151		391			0.10000986470640782
LLLTGMLVGGI	11	Oxidation (M)	_LLLTGM(Oxidation (M))LVGGI_		LLLTGM(1)LVGGI		LLLTGM(130)LVGGI	0	0	1		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.82958984375	2	551.83066	1101.64677	-0.057858	-3.1928E-05	-2.4396	-0.0013463	-2.4975	-0.0013782	551.8291985704104	102.86	2.5227	102.86	102.59	105.12	-0.0046005					140	66	4	0	0	0	0.025345	1	13094	13094		128.86	26.088	1	4991000			43680	9393	30180	30231	49153	49153		391			0.10000986470640782
LLLTGMLVGGI	11	Oxidation (M)	_LLLTGM(Oxidation (M))LVGGI_		LLLTGM(1)LVGGI		LLLTGM(110)LVGGI	0	0	1		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.8292236328125	2	551.83066	1101.64677	0.24586	0.00013567	-2.8324	-0.001563	-2.5865	-0.0014273	551.8289666413172	102.78	1.9033	102.65	102.23	104.13	-0.12931					119	46	4	0	0	0	0.084721	1	12766	12766		111.65	8.8749	1	3325500			43681	9393	30180	30231	49154	49154		391			0.10000986470640782
LLLTGMLVGGI	11	Oxidation (M)	_LLLTGM(Oxidation (M))LVGGI_		LLLTGM(1)LVGGI		LLLTGM(120)LVGGI	0	0	1		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.8291625976562	2	551.83066	1101.64677	-0.10765	-5.9407E-05	-2.6164	-0.0014438	-2.7241	-0.0015032	551.8291137740849	102.82	1.7524	102.69	102.36	104.12	-0.12783					96	43	3	0	0	0	0.05377	1	12792	12792		120.62	7.2094	1	3679100			43682	9393	30180	30231	49155	49155		391			0.10000986470640782
LLLTGMLVGGI	11	Oxidation (M)	_LLLTGM(Oxidation (M))LVGGI_		LLLTGM(1)LVGGI		LLLTGM(120)LVGGI	0	0	1		ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.8294677734375	2	551.83066	1101.64677	0.1778	9.8113E-05	-2.7168	-0.0014992	-2.539	-0.0014011	551.8290436959719	102.87	1.6249	102.7	102.42	104.05	-0.17034					87	39	3	0	0	0	0.05377	2	12780	12766;12780		120.62	19.02	1	2934300			43683	9393	30180	30231	49156;49157	49157		391			0.10000986470640782
LLLTLDVGPA	10	Unmodified	_LLLTLDVGPA_					0	0	0			REV__CON__Q148H6	REV__CON__Q148H6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.3076477050781	2	506.307875	1010.6012	0.15853	8.0265E-05	0.051471	2.606E-05	0.21	0.00010633	506.3077712435844	83.991	1.2368	83.853	83.383	84.62	-0.13789					60	28	4	0	0	0	1.0781	1	10136	10136		35.618	0	1	1196600	+	+	43684	19567	30181	30232	49158	49158					0.09632084279905939
LLLTLTSFNSL	11	Unmodified	_LLLTLTSFNSL_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.354736328125	2	611.358096	1220.70164	-0.79597	-0.00048662	-2.4967	-0.0015264	-3.2927	-0.002013	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	0.97926	1	11668	11668		41.427	8.6142	1	4189200	+		43685	24288	30182	30233	49159	49159					0.1001169654291516
LLLTPGVEL	9	Unmodified	_LLLTPGVEL_					0	0	0		ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENST00000481458.1_1_21:37771819-37785123:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7972412109375	2	477.797143	953.579734	0.40374	0.0001929	-0.32063	-0.0001532	0.083106	3.9708E-05	477.7969033037499	96.363	2.7985	96.363	95.476	98.275	0					152	64	4	0	0	0	0.80658	1	12327	12327		38.806	1.647	1	7655300			43686	15228	30183	30234	49160	49160					0.10108699251179587
LLLTPGVEL	9	Unmodified	_LLLTPGVEL_					0	0	0		ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENST00000481458.1_1_21:37771819-37785123:+|nuORF	ENST00000481458.1_1_21:37771819-37785123:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7973937988281	2	477.797143	953.579734	0.94443	0.00045125	-0.85542	-0.00040872	0.08901	4.2529E-05	477.79663613466545	96.284	2.5404	96.29	95.477	98.017	0.0065002					149	58	5	0	0	0	0.59099	1	12225	12225		53.351	2.016	1	7638300			43687	15228	30183	30234	49161	49161					0.10108699251179587
LLLTPQGIRRE	11	Unmodified	_LLLTPQGIRRE_					0	0	0			REV__ENSG00000106992|ENST00000644144|AK1	REV__ENSG00000106992|ENST00000644144|AK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.9320373535156	3	432.597983	1294.77212	0.87253	0.00037745	-1.5681	-0.00067836	-0.69558	-0.00030091	432.59715866374853	105.58	0.78917	105.42	104.98	105.77	-0.16282					65	27	5	0	0	0	1.0655	1	13130	13130		18.966	6.0088	1	1089400	+		43688	21650	30184	30235	49162	49162					0.13652414651232903
LLLTPQGIRRE	11	Unmodified	_LLLTPQGIRRE_					0	0	0			REV__ENSG00000106992|ENST00000644144|AK1	REV__ENSG00000106992|ENST00000644144|AK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	648.3920288085938	2	648.393336	1294.77212	-0.12697	-8.2326E-05	0.13319	8.6362E-05	0.0062234	4.0352E-06	648.3939088012331	105.59	1.1539	105.42	105.27	106.42	-0.16216					77	47	4	0	0	0	1.0344	1	13140	13140		29.17	0	1	1122300	+		43689	21650	30184	30235	49163	49163					0.13652414651232903
LLLTQADIVK	10	Unmodified	_LLLTQADIVK_					0	0	0		nc|ENSG00000185513|Q9Y468-4|L3MBTL1	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.7927856445312	2	557.347532	1112.68051	0.095285	5.3107E-05	-0.69069	-0.00038495	-0.5954	-0.00033185	557.3471730464463	57.541	0.37712	57.351	57.222	57.599	-0.19018					21	9	3	0	0	0	0.03519	1	6313	6313		52.937	5.0211	1	260460			43690	18593	30185	30236	49164	49164					0.1286773123401872
LLLTRNDV	8	Unmodified	_LLLTRNDV_					0	0	0			REV__ENSG00000112293|ENST00000230036|GPLD1	REV__ENSG00000112293|ENST00000230036|GPLD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2497253417969	2	472.282192	942.549831	-1.3352	-0.00063057	0.25872	0.00012219	-1.0764	-0.00050838	472.2814955707398	21.159	0.19767	20.946	20.822	21.02	-0.2128					5	3	2	0	0	0	0.027866	1	593	593		23.042	0	1	11995	+		43691	21988	30186	30237	49165	49165					0.07625760305847962
LLLTSVCPSI	10	Unmodified	_LLLTSVCPSI_					0	0	0			REV__ENST00000481773.1_1_3:113933257-113952219:+|nuORF	REV__ENST00000481773.1_1_3:113933257-113952219:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303466796875	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	1.1307	1	11115	11115		26.693	0	1	11993000	+		43692	33460	30187	30238	49166	49166					0.06840724545213561
LLLTVLVAL	9	Unmodified	_LLLTVLVAL_					0	0	0		ENST00000435340.6_1_17:17409107-17410505:-|nuORF;ENST00000477595.5_1_17:17409107-17410369:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000435340.6_1_17:17409107-17410505:-|nuORF	ENST00000435340.6_1_17:17409107-17410505:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.8339538574219	2	477.833529	953.652505	0.44753	0.00021385	-0.10736	-5.13E-05	0.34018	0.00016255	477.8333134263394	105.5	0.66282	105.38	105.24	105.9	-0.12444					38	19	3	0	0	0	1.0402	1	13150	13150		12.207	0	1	313620			43693	4671	30188	30239	49167	49167					0.17382453044604063
LLLTWKTV	8	Unmodified	_LLLTWKTV_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.76141357421875	2	487.307678	972.600803	0.017658	8.6049E-06	-3.0086	-0.0014661	-2.9909	-0.0014575	487.30678269190173	63.648	0.82859	63.397	63.084	63.912	-0.25141					50	22	3	0	0	0	0.027866	1	7425	7425		26.796	0	1	550300			43694	18528	30189	30240	49168	49168					0.11340709350702127
LLLTYNAK	8	Unmodified	_LLLTYNAK_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.262939453125	2	468.28166	934.548768	-0.12765	-5.9774E-05	0.11853	5.5507E-05	-0.0091115	-4.2667E-06	468.28158681075354	47.289	0.69389	47.348	47.106	47.8	0.059097					27	20	2	0	0	0	0.027866	1	4634	4634		16.473	0	1	709260	+		43695	26617	30190	30241	49169	49169					0.07887545936944207
LLLTYNAK	8	Unmodified	_LLLTYNAK_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.28166	934.548768	-0.10615	-4.9708E-05	0.1037	4.8563E-05	-0.0024465	-1.1456E-06	468.28151912644944	47.345	0.48355	47.345	47.076	47.56	0	-0.0040567	-0.00010935	NaN	16.473	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	764870	+		43696	26617	30190	30241							0.07887545936944207
LLLTYNAK	8	Unmodified	_LLLTYNAK_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.28166	934.548768	0.31585	0.00014791	3.0351	0.0014213	3.351	0.0015692	468.28371029280805	47.506	0.73312	47.353	47.125	47.858	-0.15301	0.0044352	0.0026361	NaN	16.473	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695910	+		43697	26617	30190	30241							0.07887545936944207
LLLVAYGQR	9	Unmodified	_LLLVAYGQR_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000530363.5_1_16:81161532-81175087:-|nuORF;ENST00000533478.5_1_16:81157348-81174942:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7840576171875	2	516.813659	1031.61277	0.33347	0.00017234	-2.4681	-0.0012756	-2.1346	-0.0011032	516.8125210279683	93.745	0.64987	93.623	93.366	94.016	-0.12215					24	14	2	0	0	0	0.024517	1	11580	11580		19.36	7.1531	1	79154			43698	18475	30191	30242	49170	49170					0.09822326093899392
LLLVDCQAT	9	Unmodified	_LLLVDCQAT_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;ENSG00000125731|ENST00000245908|SH2D3A;nc|ENSG00000125731|Q9BRG2-2|SH2D3A	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2817687988281	2	488.26261	974.510668	-0.91964	-0.00044903	2.0432	0.00099764	1.1236	0.00054861	488.26362181690644	86.33	0.52082	86.354	86.072	86.593	0.023666					17	11	2	0	0	0	0.024506	1	10733	10733		38.806	14.603	1	98152			43699	4131	30192	30243	49171	49171					0.022392919599724337
LLLVDCQAT	9	Unmodified	_LLLVDCQAT_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;ENSG00000125731|ENST00000245908|SH2D3A;nc|ENSG00000125731|Q9BRG2-2|SH2D3A	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.26261	974.510668	0.70669	0.00034505	-0.63864	-0.00031182	0.068047	3.3225E-05	488.26213805142515	86.324	0.69662	86.182	85.754	86.451	-0.14218	-0.083958	-0.0010878	NaN	30.504	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100520			43700	4131	30192	30243							0.022392919599724337
LLLVDCQAT	9	Unmodified	_LLLVDCQAT_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;ENSG00000125731|ENST00000245908|SH2D3A;nc|ENSG00000125731|Q9BRG2-2|SH2D3A	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	488.26261	974.510668	0.4369	0.00021332	1.5063	0.00073549	1.9433	0.00094882	488.2625922730103	86.371	1.2467	86.233	85.875	87.122	-0.13734	-0.032338	0.0010069	NaN	30.504	43	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85777			43701	4131	30192	30243							0.022392919599724337
LLLVELDL	8	Unmodified	_LLLVELDL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2790222167969	2	464.291694	926.568835	0.53128	0.00024667	2.6797	0.0012441	3.2109	0.0014908	464.29389055094396	51.698	0.6754	51.58	51.082	51.758	-0.11876					27	17	2	0	0	0	0.027866	1	5357	5357		44.531	0	1	92931	+		43702	24045	30193	30244	49172	49172					0.10261296876910819
LLLVFAVLF	9	Unmodified	_LLLVFAVLF_					0	0	0			REV__ENST00000590056.1_1_18:61033898-61034411:-|nuORF	REV__ENST00000590056.1_1_18:61033898-61034411:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.799560546875	2	517.836071	1033.65759	-0.41571	-0.00021527	2.8566	0.0014793	2.4409	0.001264	517.8376841384589	104.58	0.41079	104.45	104.23	104.64	-0.12927					13	9	2	0	0	0	0.024475	1	13008	13008		39.021	0	1	71038	+		43703	22464	30194	30245	49173	49173					0.1421075690723228
LLLVLPSAE	9	Unmodified	_LLLVLPSAE_					0	0	0			REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7777404785156	2	477.797143	953.579734	-0.066215	-3.1637E-05	3.1374	0.001499	3.0712	0.0014674	477.7980841678407	27.255	0.48342	27.242	26.869	27.352	-0.012983					21	12	2	0	0	0	0.024412	1	1453	1453		31.955	1.4512	1	731180	+		43704	35924	30195	30246	49174	49174					0.10108699251179587
LLLVLSPRLD	10	Unmodified	_LLLVLSPRLD_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2843627929688	2	569.863349	1137.71214	-0.37133	-0.00021161	-2.6394	-0.0015041	-3.0108	-0.0017157	569.8620668157974	81.371	0.16501	81.229	81.11	81.275	-0.14249					5	3	2	0	0	0	0.03519	1	9768	9768		23.523	0	1	44200			43705	1424	30196	30247	49175	49175					0.14879723987974103
LLLVMLTLI	9	Unmodified	_LLLVMLTLI_					0	0	0		ENST00000022615.8_1_8:42252643-42256287:+|nuORF	ENST00000022615.8_1_8:42252643-42256287:+|nuORF	ENST00000022615.8_1_8:42252643-42256287:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2948608398438	2	514.843039	1027.67153	-0.1317	-6.7806E-05	2.9983	0.0015437	2.8666	0.0014759	514.8444217851408	53.876	0.34685	53.63	53.458	53.804	-0.2453					18	10	2	0	0	0	0.024535	1	5693	5693		12.207	0	1	289170			43706	11102	30197	30248	49176	49176					0.15879666344017096
LLLVMLTLI	9	Unmodified	_LLLVMLTLI_					0	0	0		ENST00000022615.8_1_8:42252643-42256287:+|nuORF	ENST00000022615.8_1_8:42252643-42256287:+|nuORF	ENST00000022615.8_1_8:42252643-42256287:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.843039	1027.67153	-0.11705	-6.026E-05	2.6741	0.0013767	2.557	0.0013165	514.8443762177797	53.803	0.21539	53.803	53.691	53.907	0	0.14958	-0.0010431	NaN	17.365	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78662			43707	11102	30197	30248							0.15879666344017096
LLLVRLPLL	9	Unmodified	_LLLVRLPLL_					0	0	0			REV__ENST00000397901.7_1_16:89720316-89724043:-|nuORF	REV__ENST00000397901.7_1_16:89720316-89724043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2816162109375	2	525.375895	1048.73724	-1.9737	-0.0010369	1.8792	0.00098726	-0.094549	-4.9674E-05	525.3767252285611	90.967	1.345	90.967	90.384	91.729	0					58	31	3	0	0	0	0.024357	1	11536	11536		44.531	0	1	394010	+		43708	31790	30198	30249	49177	49177					0.21481823581234494
LLLVRLPLL	9	Unmodified	_LLLVRLPLL_					0	0	0			REV__ENST00000397901.7_1_16:89720316-89724043:-|nuORF	REV__ENST00000397901.7_1_16:89720316-89724043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.28125	2	525.375895	1048.73724	0.41043	0.00021563	-0.65809	-0.00034575	-0.24766	-0.00013011	525.3755205611292	91.011	1.5085	91.022	90.238	91.747	0.011276					56	35	2	0	0	0	0.023954	1	11462	11462		74.517	11.538	1	289360	+		43709	31790	30198	30249	49178	49178					0.21481823581234494
LLLVSCGRFI	10	Carbamidomethyl (C)	_LLLVSC(Carbamidomethyl (C))GRFI_	LLLVSC(1)GRFI		LLLVSC(42)GRFI		0	1	0			REV__ENST00000310074.7_1_4:7057430-7057760:+|nuORF	REV__ENST00000310074.7_1_4:7057430-7057760:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.341726	1176.6689	-0.27156	-0.00016004	2.4745	0.0014583	2.2029	0.0012983	589.343051619512	103.85	0.53911	103.68	103.44	103.98	-0.16791					37	12	4	0	0	0	1.0271	1	12906	12906		42.396	15.703	1	433340	+		43710	30178	30199	30250	49179	49179	394				0.08763210939059718
LLLVSGIDL	9	Unmodified	_LLLVSGIDL_					0	0	0		ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.79736328125	2	471.797143	941.579734	-0.34274	-0.00016171	0.5594	0.00026392	0.21665	0.00010222	471.7972669938408	85.602	1.3414	85.626	85.035	86.376	0.024162					58	31	3	0	0	0	0.29104	1	10674	10674		76.847	5.5509	1	1244500			43711	15941	30200	30251	49180	49180					0.10660699251207006
LLLVSGIDL	9	Unmodified	_LLLVSGIDL_					0	0	0		ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	471.797143	941.579734	0.16606	7.8348E-05	-0.19785	-9.3344E-05	-0.031785	-1.4996E-05	471.79693021431285	85.681	0.83841	85.624	85.355	86.194	-0.05761	0.048697	1.3483E-05	NaN	76.847	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	773500			43712	15941	30200	30251							0.10660699251207006
LLLVSGIDL	9	Unmodified	_LLLVSGIDL_					0	0	0		ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.797143	941.579734	0.50602	0.00023874	-0.34891	-0.00016462	0.15711	7.4124E-05	471.7968746215946	85.69	0.81143	85.495	85.172	85.983	-0.19508	-0.080003	-0.00012906	NaN	76.847	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324480			43713	15941	30200	30251							0.10660699251207006
LLLVSGIDL	9	Unmodified	_LLLVSGIDL_					0	0	0		ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.797143	941.579734	0.8591	0.00040532	-0.71069	-0.0003353	0.14841	7.0018E-05	471.7966900761084	85.66	0.8064	85.51	85.158	85.964	-0.14967	-0.064853	-0.00047043	NaN	76.847	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451250			43714	15941	30200	30251							0.10660699251207006
LLLVSGIDL	9	Unmodified	_LLLVSGIDL_					0	0	0		ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	ENST00000519072.5_1_8:42251729-42254267:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	471.797143	941.579734	0.15999	7.5483E-05	0.0015758	7.4345E-07	0.16157	7.6226E-05	471.79703884185085	85.652	0.89514	85.515	85.241	86.136	-0.13753	-0.060291	0.00020166	NaN	76.847	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635180			43715	15941	30200	30251							0.10660699251207006
LLLVSPLLV	9	Unmodified	_LLLVSPLLV_					0	0	0			REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.8341369628906	2	483.833529	965.652505	-0.18462	-8.9325E-05	0.69072	0.00033419	0.5061	0.00024487	483.8336095134233	103.13	0.37499	103	102.83	103.21	-0.12783					19	8	3	0	0	0	0.64155	1	12843	12843		50.025	7.5501	1	121430	+		43716	32190	30201	30252	49181	49181					0.1683045304461075
LLLVSPLLV	9	Unmodified	_LLLVSPLLV_					0	0	0			REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.833529	965.652505	-0.31525	-0.00015253	0.057783	2.7957E-05	-0.25747	-0.00012457	483.8334038647379	103.3	0.67355	103.3	103	103.67	0	0.14251	0.00011876	NaN	50.025	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196030	+		43717	32190	30201	30252							0.1683045304461075
LLLVSPLLV	9	Unmodified	_LLLVSPLLV_					0	0	0			REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.833529	965.652505	-0.087883	-4.2521E-05	0.074101	3.5853E-05	-0.013781	-6.6679E-06	483.8334215767432	103.26	0.6778	103.27	102.89	103.57	0.0054169	0.11193	0.00013455	NaN	50.025	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222800	+		43718	32190	30201	30252							0.1683045304461075
LLLVSPLLV	9	Unmodified	_LLLVSPLLV_					0	0	0			REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.833529	965.652505	-0.086273	-4.1742E-05	0.11004	5.3241E-05	0.023767	1.1499E-05	483.8334637805913	103.32	0.79243	103.32	102.98	103.77	-0.0046082	0.1646	0.00016933	NaN	50.025	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211690	+		43719	32190	30201	30252							0.1683045304461075
LLLVSPLLV	9	Unmodified	_LLLVSPLLV_					0	0	0			REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	483.833529	965.652505	0.49221	0.00023815	-0.24271	-0.00011743	0.2495	0.00012072	483.8333069190511	103.11	0.40599	102.99	102.83	103.23	-0.12724	-0.16959	-0.00017202	NaN	50.025	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148640	+		43720	32190	30201	30252							0.1683045304461075
LLLVSPLLV	9	Unmodified	_LLLVSPLLV_					0	0	0			REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	483.833529	965.652505	-0.18462	-8.9325E-05	0.69072	0.00033419	0.5061	0.00024487	483.8336095134233	103.13	0.37499	103	102.83	103.21	-0.12783	-0.15527	0.00073123	NaN	50.025	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121430	+		43721	32190	30201	30252							0.1683045304461075
LLLVSPLLV	9	Unmodified	_LLLVSPLLV_					0	0	0			REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	REV__ENST00000421834.6_3_6:56707955-56708075:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	483.833529	965.652505	0.52705	0.000255	-0.49575	-0.00023986	0.031296	1.5142E-05	483.83317749499423	103.23	0.48103	103.06	102.84	103.32	-0.17034	-0.094163	-0.00041688	NaN	50.025	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178510	+		43722	32190	30201	30252							0.1683045304461075
LLLVTEGLL	9	Unmodified	_LLLVTEGLL_					0	0	0		ENSG00000140832|ENST00000268485|MARVELD3	ENSG00000140832|ENST00000268485|MARVELD3	ENSG00000140832|ENST00000268485|MARVELD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.8103332519531	2	485.812793	969.611034	0.026188	1.2722E-05	-0.64721	-0.00031442	-0.62102	-0.0003017	485.81251497527137	106.76	0.47713	106.76	106.63	107.1	-0.003479					21	15	2	0	0	0	0.78069	1	13676	13676		40.573	1.7665	1	211050			43723	5445	30202	30253	49182	49182					0.1250127228530573
LLLVTKAVK	9	Unmodified	_LLLVTKAVK_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5;nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000171680|O94827-4|PLEKHG5;nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7848815917969	2	492.844428	983.674303	-0.44169	-0.00021768	0.20279	9.9943E-05	-0.2389	-0.00011774	492.8447363120835	46.659	0.19659	46.465	46.38	46.577	-0.19387					7	5	2	0	0	0	0.024506	1	4488	4488		23.042	0	1	114620			43724	8181;953	30203	30254	49183	49183					0.18181257793185068
LLLVWAAPL	9	Unmodified	_LLLVWAAPL_					0	0	0			REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF	REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.8317565917969	2	498.318046	994.621539	-0.51297	-0.00025562	-4.1313	-0.0020587	-4.6442	-0.0023143	498.3155923799443	44.625	0.55526	44.625	44.451	45.006	0					25	15	2	0	0	0	0.024389	1	4246	4246		21.702	0	1	130440	+		43725	33766	30204	30255	49184	49184					0.12401299730356641
LLLVWQLF	8	Unmodified	_LLLVWQLF_					0	0	0			REV__nc|ENSG00000148290|Q15526-2|SURF1	REV__nc|ENSG00000148290|Q15526-2|SURF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7923583984375	2	516.318046	1030.62154	-0.17897	-9.2408E-05	-3.4563	-0.0017846	-3.6353	-0.001877	516.3161306199971	77.639	0.42613	77.478	77.268	77.694	-0.16196					15	9	2	0	0	0	0.027866	1	9225	9225		9.4706	0	1	145500	+		43726	24602	30205	30256	49185	49185					0.10745299730365332
LLLWALAPL	9	Unmodified	_LLLWALAPL_					0	0	0			REV__ENSG00000224940|ENST00000446477|PRRT4	REV__ENSG00000224940|ENST00000446477|PRRT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3210144042969	2	505.325871	1008.63719	-0.75385	-0.00038094	-4.2575	-0.0021514	-5.0113	-0.0025324	505.324085613359	79.222	5.1637	79.05	78.611	83.775	-0.17226					329	123	6	0	0	0	0.22343	5	9867	9855;9867;9879;9910;9918		85.909	13.289	1	92209000	+		43727	28861	30206	30257	49186;49187;49188;49189;49190	49187					0.1332158624740032
LLLWEVTTQ	9	Unmodified	_LLLWEVTTQ_					0	0	0		ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2678833007812	2	551.810782	1101.60701	-1.4101	-0.00077812	1.4119	0.00077908	0.0017448	9.6278E-07	551.8112532845334	90.861	1.5149	90.861	90.214	91.729	0					62	35	2	0	0	0	0.024457	1	11448	11448		21.96	8.5058	1	402520			43728	9592	30207	30258	49191	49191					0.06027182791558516
LLLWLGVF	8	Unmodified	_LLLWLGVF_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21;ADAM21|p.C446Lfs*100|1|0.24|ENSG00000139985|chr14:70458836-70458836|G/-|frameshift_variant;ENST00000530196.1_1_14:70713981-70714470:-|nuORF	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.80120849609375	2	480.799489	959.584425	-0.63881	-0.00030714	3.0038	0.0014442	2.365	0.0011371	480.80082202255966	94.22	2.2256	94.226	93.689	95.914	0.0059814					161	52	5	0	0	0	1.0574	1	11959	11959		24.504	2.5441	1	22094000			43729	5383	30208	30259	49192	49192					0.10301628184618039
LLLWVVLIL	9	Unmodified	_LLLWVVLIL_					0	0	0		ENST00000458659.2_2_13:45149225-45149267:-|nuORF	ENST00000458659.2_2_13:45149225-45149267:-|nuORF	ENST00000458659.2_2_13:45149225-45149267:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.8255004882812	2	541.372821	1080.73109	-1.5855	-0.00085836	-2.8496	-0.0015427	-4.4352	-0.0024011	541.3710830412773	91.107	0.53387	90.958	90.691	91.225	-0.1487					20	12	2	0	0	0	0.024389	1	11170	11170		21.702	0	1	182590			43730	14627	30209	30260	49193	49193					0.19395305349712544
LLLWYCQI	8	Unmodified	_LLLWYCQI_					0	0	0		ENSG00000164897|ENST00000297533|TMUB1	ENSG00000164897|ENST00000297533|TMUB1	ENSG00000164897|ENST00000297533|TMUB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.80224609375	2	526.285889	1050.55722	-0.67139	-0.00035334	-1.336	-0.0007031	-2.0074	-0.0010564	526.2847952678196	76.921	0.45221	76.693	76.32	76.772	-0.22843					19	10	3	0	0	0	0.027866	1	9415	9415		57.453	0.7316	1	228060			43731	7337	30210	30261	49194	49194					0.03396776581917038
LLLWYHLV	8	Unmodified	_LLLWYHLV_					0	0	0			REV__ENSG00000177363|ENST00000317449|LRRN4CL	REV__ENSG00000177363|ENST00000317449|LRRN4CL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8077392578125	2	528.81567	1055.61679	0.31046	0.00016417	3.4027	0.0017994	3.7132	0.0019636	528.817509547834	71.915	0.95898	71.627	70.802	71.761	-0.28858					29	24	2	0	0	0	0.027866	1	8693	8693		24.504	0	1	865320	+		43732	27107	30211	30262	49195	49195					0.0912041558758574
LLLYHLVVIA	10	Unmodified	_LLLYHLVVIA_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.3062744140625	2	577.37081	1152.72707	-0.61408	-0.00035455	-2.5198	-0.0014549	-3.1339	-0.0018094	577.3692029261988	76.207	1.0169	75.979	75.633	76.65	-0.22843					81	25	4	0	0	0	0.03519	1	9377	9377		26.796	15.285	1	2857000			43733	1542	30212	30263	49196	49196					0.1568121585598874
LLLYILLCV	9	Unmodified	_LLLYILLCV_					0	0	0		ENST00000553612.5_1_14:81642676-81642709:-|nuORF	ENST00000553612.5_1_14:81642676-81642709:-|nuORF	ENST00000553612.5_1_14:81642676-81642709:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8341064453125	2	531.835214	1061.65588	-0.51233	-0.00027247	0.15942	8.4787E-05	-0.3529	-0.00018769	531.8350949499164	104.36	0.51607	104.36	104.16	104.68	0					27	12	3	0	0	0	0.80342	1	13409	13409		39.021	0	1	196300			43734	16641	30213	30264	49197	49197					0.1275137982695469
LLLYILLCV	9	Unmodified	_LLLYILLCV_					0	0	0		ENST00000553612.5_1_14:81642676-81642709:-|nuORF	ENST00000553612.5_1_14:81642676-81642709:-|nuORF	ENST00000553612.5_1_14:81642676-81642709:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.835214	1061.65588	0.017689	9.4076E-06	-0.75729	-0.00040275	-0.7396	-0.00039334	532.3363295793926	104.46	0.44046	104.34	104.1	104.54	-0.12561	-0.056937	-0.00044009	NaN	39.021	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81136			43735	16641	30213	30264							0.1275137982695469
LLLYILLCV	9	Unmodified	_LLLYILLCV_					0	0	0		ENST00000553612.5_1_14:81642676-81642709:-|nuORF	ENST00000553612.5_1_14:81642676-81642709:-|nuORF	ENST00000553612.5_1_14:81642676-81642709:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.835214	1061.65588	0.23729	0.0001262	-1.0371	-0.00055158	-0.79984	-0.00042538	531.8345207346869	104.66	0.39539	104.49	104.23	104.63	-0.16484	0.096056	-0.00073776	NaN	39.021	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90854			43736	16641	30213	30264							0.1275137982695469
LLLYNKLSD	9	Unmodified	_LLLYNKLSD_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8214111328125	2	539.810782	1077.60701	-1.4991	-0.00080921	1.128	0.00060891	-0.37105	-0.0002003	539.8111154421334	64.844	0.88135	64.844	64.578	65.46	0					48	24	3	0	0	0	0.024457	1	7613	7613		29.15	2.4566	1	1209900	+		43737	23654	30214	30265	49198	49198					0.0713118279156788
LLLYSKLIL	9	Unmodified	_LLLYSKLIL_					0	0	0		ENST00000374583.1_1_X:68383083-68383194:-|nuORF	ENST00000374583.1_1_X:68383083-68383194:-|nuORF	ENST00000374583.1_1_X:68383083-68383194:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3273315429688	2	538.359911	1074.70527	0.47734	0.00025698	0.8339	0.00044894	1.3112	0.00070592	538.3605269609967	99.828	0.28394	99.703	99.471	99.755	-0.12503					10	7	2	0	0	0	0.024541	1	12363	12363		7.6903	0.49693	1	52440			43738	13122	30215	30266	49199	49199					0.1709041110743783
LLLYTSAF	8	Unmodified	_LLLYTSAF_					0	0	0			REV__ENSG00000180914|ENST00000316793|OXTR	REV__ENSG00000180914|ENST00000316793|OXTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.2790222167969	2	464.262936	926.51132	-1.6242	-0.00075404	2.2827	0.0010598	0.65858	0.00030575	464.26497067096864	51.89	0.46839	51.621	51.4	51.869	-0.26903					15	12	2	0	0	0	0.027866	1	5380	5380		28.254	0	1	243330	+		43739	27372	30216	30267	49200	49200					0.04512454671339583
LLMAALYLV	9	Unmodified	_LLMAALYLV_					0	0	0		nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2852478027344	2	503.803914	1005.59328	-0.19798	-9.9744E-05	3.1001	0.0015618	2.9021	0.0014621	503.8054168145949	37.32	0.57786	37.256	36.978	37.556	-0.063389					45	15	4	0	0	0	0.024389	1	3011	3011		49.211	27.508	1	777640			43740	10090	30217	30268	49201	49201					0.0907023375875724
LLMAALYLV	9	Unmodified	_LLMAALYLV_					0	0	0		nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	503.803914	1005.59328	0.055594	2.8008E-05	2.735	0.0013779	2.7906	0.0014059	503.8052430041772	37.48	0.67795	37.48	37.158	37.836	0	0.031502	-0.00022112	NaN	39.021	52	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791010			43741	10090	30217	30268							0.0907023375875724
LLMAALYLV	9	Unmodified	_LLMAALYLV_					0	0	0		nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.803914	1005.59328	-0.085169	-4.2909E-05	3.0939	0.0015587	3.0087	0.0015158	503.8053956716944	37.528	0.5987	37.56	37.189	37.787	0.032269	0.11154	0.00014054	NaN	39.021	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577460			43742	10090	30217	30268							0.0907023375875724
LLMAGPALQE	10	Unmodified	_LLMAGPALQE_					0	0	0		ENST00000340305.9_1_1:9662757-9662931:+|nuORF	ENST00000340305.9_1_1:9662757-9662931:+|nuORF	ENST00000340305.9_1_1:9662757-9662931:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8095092773438	2	521.78371	1041.55287	-0.48527	-0.00025321	0.40519	0.00021142	-0.080084	-4.1786E-05	521.7834317569962	53.894	0.25512	53.747	53.566	53.821	-0.14723					11	6	2	0	0	0	0.45367	1	5819	5819		93.195	13.256	1	96056			43743	12468	30218	30269	49202	49202					0.033752673683238754
LLMARSLAK	9	Unmodified	_LLMARSLAK_					0	0	0			REV__ENST00000552433.1_1_12:51449776-51450294:+|nuORF	REV__ENST00000552433.1_1_12:51449776-51450294:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7947082519531	2	501.810062	1001.60557	-0.50357	-0.0002527	2.8523	0.0014313	2.3487	0.0011786	501.8121346642749	50.145	0.19162	50.145	49.986	50.178	0					7	5	2	0	0	0	0.024477	1	5207	5207		35.618	14.671	1	75120	+		43744	20159	30219	30270	49203	49203					0.10483270221811836
LLMASLTLN	9	Unmodified	_LLMASLTLN_					0	0	0			REV__nc|ENSG00000140836|Q15911-2|ZFHX3	REV__nc|ENSG00000140836|Q15911-2|ZFHX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7828369140625	2	488.280803	974.547053	-0.15656	-7.6443E-05	-3.4906	-0.0017044	-3.6472	-0.0017809	488.27894925059366	89.432	2.2171	89.448	87.907	90.124	0.015907					86	52	3	0	0	0	0.024405	1	11144	11144		35.618	20.753	1	1289600	+		43745	24044	30220	30271	49204	49204					0.058761688566846715
LLMASLTLN	9	Unmodified	_LLMASLTLN_					0	0	0			REV__nc|ENSG00000140836|Q15911-2|ZFHX3	REV__nc|ENSG00000140836|Q15911-2|ZFHX3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.280803	974.547053	-0.20882	-0.00010196	-3.1077	-0.0015174	-3.3165	-0.0016194	488.2793207594852	89.349	0.76254	89.222	88.997	89.76	-0.12774	-0.10662	0.0004085	NaN	35.618	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393460	+		43746	24044	30220	30271							0.058761688566846715
LLMAYFIG	8	Unmodified	_LLMAYFIG_					0	0	0			REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.25341796875	2	464.254057	926.493561	0.32832	0.00015242	-0.92996	-0.00043174	-0.60164	-0.00027931	464.25350960111643	78.41	1.5236	78.179	77.834	79.357	-0.23141					99	35	4	0	0	0	0.9599	1	9375	9375		43.626	10.133	1	2225500	+		43747	22297	30221	30272	49205	49205					0.027374161448278755
LLMEAEALR	9	Unmodified	_LLMEAEALR_					0	0	0			REV__ENSG00000179142|ENST00000323110|CYP11B2	REV__ENSG00000179142|ENST00000323110|CYP11B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8024291992188	2	523.289159	1044.56377	0.39211	0.00020519	-0.16048	-8.398E-05	0.23163	0.00012121	523.7916768201691	96.815	0.66225	96.824	96.575	97.237	0.0089111					18	14	2	0	0	0	0.024263	1	12340	12340		71.296	14.575	1	33013	+		43748	27242	30222	30273	49206	49206					0.04326669742613376
LLMESLSKL	9	Unmodified	_LLMESLSKL_					0	0	0		ENST00000379887.8_2_15:72875657-72875942:+|nuORF	ENST00000379887.8_2_15:72875657-72875942:+|nuORF	ENST00000379887.8_2_15:72875657-72875942:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.3002319335938	2	517.301736	1032.58892	-0.80371	-0.00041576	-1.9677	-0.0010179	-2.7714	-0.0014336	517.3005652204125	93.495	0.55046	93.503	93.013	93.564	0.0077286					28	12	3	0	0	0	0.096521	1	11796	11796		111.65	3.5608	1	2495800			43749	13286	30223	30274	49207	49207					0.07392724545206875
LLMFLEIS	8	Unmodified	_LLMFLEIS_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000561818.1_1_15:42455822-42456706:-|nuORF;ENST00000562258.5_1_15:42452954-42456706:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.27435302734375	2	483.272447	964.530341	-1.073	-0.00051857	4.373	0.0021133	3.2999	0.0015948	483.27460517941046	30.404	1.2801	30.404	29.977	31.257	0					90	30	5	0	0	0	0.71717	1	1973	1973		65.897	10.393	1	9871600			43750	7621	30224	30275	49208	49208					0.046656679707325566
LLMFLLWL	8	Unmodified	_LLMFLLWL_					0	0	0		ENST00000314666.10_1_17:8172582-8172783:+|nuORF	ENST00000314666.10_1_17:8172582-8172783:+|nuORF	ENST00000314666.10_1_17:8172582-8172783:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2553100585938	2	524.816824	1047.6191	-0.89003	-0.0004671	0.65191	0.00034213	-0.23812	-0.00012497	524.8170463163583	45.16	0.60683	45.061	44.749	45.356	-0.099445					38	16	3	0	0	0	0.027866	1	4256	4256		24.504	2.5441	1	1266200			43751	12119	30225	30276	49209	49209					0.0971912800107475
LLMFQEAL	8	Unmodified	_LLMFQEAL_					0	0	0		ENST00000433049.5_1_5:139918555-139918624:+|nuORF	ENST00000433049.5_1_5:139918555-139918624:+|nuORF	ENST00000433049.5_1_5:139918555-139918624:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7627258300781	2	482.762246	963.50994	-0.99094	-0.00047839	1.3103	0.00063257	0.31938	0.00015418	482.76276330465237	85.612	0.66078	85.636	85.241	85.902	0.023666					38	15	3	0	0	0	0.91239	1	10675	10675		50.025	3.2581	1	898100			43752	14215	30226	30277	49210	49210					0.02672497310925337
LLMGGPKLLK	10	Unmodified	_LLMGGPKLLK_					0	0	0			REV__ENSG00000123600|ENST00000375258|METTL8	REV__ENSG00000123600|ENST00000375258|METTL8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3059692382812	2	535.343738	1068.67292	-0.65331	-0.00034974	0.46634	0.00024965	-0.18696	-0.00010009	535.3438153827025	78.803	1.615	78.821	78.238	79.853	0.018677					51	38	2	0	0	0	0.03519	1	9608	9608		17.365	5.8539	1	121430	+		43753	22710	30227	30278	49211	49211					0.14133300432763463
LLMGKQPL	8	Unmodified	_LLMGKQPL_					0	0	0			REV__ENST00000379598.9_1_20:3786205-3786352:+|nuORF	REV__ENST00000379598.9_1_20:3786205-3786352:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2743835449219	2	450.272781	898.531009	-0.35559	-0.00016011	3.5419	0.0015948	3.1863	0.0014347	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	1.0017	1	11776	11776		37.028	1.8278	1	67958000	+		43754	31438	30228	30279	49212	49212					0.07768507410446546
LLMGLKTEP	9	Unmodified	_LLMGLKTEP_					0	0	0			REV__ENST00000480863.1_1_2:109111769-109112171:+|nuORF	REV__ENST00000480863.1_1_2:109111769-109112171:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.280029296875	2	501.288628	1000.5627	0.39447	0.00019774	-0.74416	-0.00037304	-0.34969	-0.0001753	501.28825251632264	91.046	0.8692	91.057	90.617	91.487	0.011276					28	20	2	0	0	0	0.024288	1	11390	11390		52.937	2.9122	1	378510	+		43755	33434	30229	30280	49213	49213					0.062444553737236674
LLMGNNKLL	9	Unmodified	_LLMGNNKLL_					0	0	0		ENSG00000123552|ENST00000500704|USP45;nc|ENSG00000123552|Q70EL2-3|USP45	ENSG00000123552|ENST00000500704|USP45	ENSG00000123552|ENST00000500704|USP45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7666320800781	2	508.30207	1014.58959	-0.17019	-8.6509E-05	-2.827	-0.001437	-2.9972	-0.0015235	508.3006030152032	66.123	0.53512	65.851	65.568	66.103	-0.27282					39	13	4	0	0	0	0.023775	1	7819	7819		68.485	0	1	1214800			43756	3984	30230	30281	49214	49214					0.08287563984913504
LLMHVSLL	8	Unmodified	_LLMHVSLL_					0	0	0			REV__ENST00000452918.6_2_19:19104239-19104413:-|nuORF	REV__ENST00000452918.6_2_19:19104239-19104413:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7561340332031	2	463.280606	924.546659	0.34454	0.00015962	2.2752	0.0010541	2.6198	0.0012137	463.28181021445533	40.315	0.90554	40.203	39.867	40.773	-0.11223					40	24	2	0	0	0	0.027866	1	3572	3572		28.254	0	1	238170	+		43757	32742	30231	30282	49215	49215					0.0813679392749691
LLMKQTSIV	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))LLM(Oxidation (M))KQTSIV_		LLM(1)KQTSIV		LLM(48)KQTSIV	1	0	1			REV__ENST00000251047.5_1_18:56996763-56996880:-|nuORF	REV__ENST00000251047.5_1_18:56996763-56996880:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.8114624023438	2	545.812467	1089.61038	-1.5334	-0.00083692	-0.24482	-0.00013362	-1.7782	-0.00097055	545.8126020667369	91.474	1.5267	91.474	91.011	92.537	0					93	36	4	0	0	0	0.67687	1	11620	11620		47.657	6.8792	1	3855000	+		43758	29495	30232	30283	49216	49216		858			0.06916109573921858
LLMKRYFI	8	Unmodified	_LLMKRYFI_					0	0	0		ENST00000452760.2_1_17:20516367-20517318:+|nuORF	ENST00000452760.2_1_17:20516367-20517318:+|nuORF	ENST00000452760.2_1_17:20516367-20517318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.81103515625	2	542.322805	1082.63106	-0.34608	-0.00018769	1.2857	0.00069724	0.93958	0.00050956	542.3234842847344	62.826	0.29638	62.881	62.719	63.016	0.054104					9	6	2	0	0	0	0.027866	1	7255	7255		42.474	3.453	1	157220			43759	14538	30233	30284	49217	49217					0.09304744744235904
LLMKRYFI	8	Unmodified	_LLMKRYFI_					0	0	0		ENST00000452760.2_1_17:20516367-20517318:+|nuORF	ENST00000452760.2_1_17:20516367-20517318:+|nuORF	ENST00000452760.2_1_17:20516367-20517318:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.322805	1082.63106	-0.60503	-0.00032812	4.1892	0.0022719	3.5841	0.0019438	542.3254951367862	63.21	0.24612	62.951	62.876	63.122	-0.25824	0.050109	0.0021222	NaN	42.474	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78467			43760	14538	30233	30284							0.09304744744235904
LLMLGLELL	9	Unmodified	_LLMLGLELL_					0	0	0		ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8153991699219	2	507.817021	1013.61949	-0.3235	-0.00016428	-2.496	-0.0012675	-2.8195	-0.0014318	507.81561002100875	103.92	1.1172	103.92	103.56	104.68	0					75	27	5	0	0	0	0.15889	1	13323	13323		97.473	8.8298	1	1065300			43761	3214	30234	30285	49218	49218					0.11322502930238443
LLMLIEMSL	9	Unmodified	_LLMLIEMSL_					0	0	0		nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF	nc|ENSG00000073969|P46459-2|NSF	nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7655639648438	2	531.800514	1061.58648	-0.40318	-0.00021441	1.6816	0.00089429	1.2785	0.00067988	532.303087567994	40.297	0.45229	40.297	40.099	40.551	0					19	12	2	0	0	0	0.024294	1	3514	3514		55.504	0	1	101050			43762	1521	30235	30286	49219	49219					0.058145528159002424
LLMLLLGK	8	Unmodified	_LLMLLLGK_					0	0	0		ENST00000476743.5_2_X:11776781-11777966:+|nuORF;ENST00000380693.7_1_X:11777873-11777969:+|nuORF;ENST00000337339.6_1_X:11776446-11777969:+|nuORF;ENST00000380692.6_1_X:11777763-11777966:+|nuORF	ENST00000476743.5_2_X:11776781-11777966:+|nuORF	ENST00000476743.5_2_X:11776781-11777966:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7813415527344	2	450.801174	899.587796	0.70725	0.00031883	-1.1427	-0.00051513	-0.43546	-0.00019631	450.8004678424764	98.537	0.24887	98.534	98.431	98.68	-0.0038834					8	5	2	0	0	0	0.027866	1	12501	12501		26.796	5.0938	1	61764			43763	12421	30236	30287	49220	49220					0.13398554966966003
LLMLLPVGY	9	Unmodified	_LLMLLPVGY_					0	0	0		ENSG00000009765|ENST00000344419|IYD	ENSG00000009765|ENST00000344419|IYD	ENSG00000009765|ENST00000344419|IYD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8036804199219	2	509.803914	1017.59328	0.50937	0.00025968	-0.94383	-0.00048117	-0.43446	-0.00022149	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.99355	1	10653	10653		21.702	0	1	2754700			43764	861	30237	30288	49221	49221					0.08518233758775295
LLMLPLPL	8	Oxidation (M)	_LLM(Oxidation (M))LPLPL_		LLM(1)LPLPL		LLM(67)LPLPL	0	0	1			REV__ENSG00000203989|ENST00000371402|RHOXF2B	REV__ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.29498291015625	2	463.293182	924.571812	-0.66685	-0.00030895	4.2507	0.0019693	3.5839	0.0016604	463.29505731713635	48.375	0.99148	48.277	47.966	48.958	-0.097549					80	26	5	0	0	0	0.69959	1	4804	4804		67.327	8.5452	1	9029400	+		43765	23229	30238	30289	49222	49222		689			0.1065084873006299
LLMLPLPL	8	Oxidation (M)	_LLM(Oxidation (M))LPLPL_		LLM(1)LPLPL		LLM(67)LPLPL	0	0	1			REV__ENSG00000203989|ENST00000371402|RHOXF2B	REV__ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.29510498046875	2	463.293182	924.571812	-0.14797	-6.8552E-05	3.6069	0.0016711	3.459	0.0016025	463.29478320941917	48.514	1.2853	48.332	48.02	49.305	-0.18206					98	34	5	0	0	0	0.69959	1	4792	4792		67.327	6.3553	1	10417000	+		43766	23229	30238	30289	49223	49223		689			0.1065084873006299
LLMLSGVCPP	10	Unmodified	_LLMLSGVCPP_					0	0	0		ENST00000259526.3_1_8:120428798-120429168:+|nuORF	ENST00000259526.3_1_8:120428798-120429168:+|nuORF	ENST00000259526.3_1_8:120428798-120429168:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7573852539062	2	515.277206	1028.53986	-0.16013	-8.2513E-05	-2.4164	-0.0012451	-2.5765	-0.0013276	515.2761601782088	73.997	0.29453	73.72	73.482	73.776	-0.2769					11	7	2	0	0	0	0.03519	1	8714	8714		38.806	22.101	1	317290			43767	11437	30239	30290	49224	49224					0.026731129846211843
LLMLSGVCPP	10	Unmodified	_LLMLSGVCPP_					0	0	0		ENST00000259526.3_1_8:120428798-120429168:+|nuORF	ENST00000259526.3_1_8:120428798-120429168:+|nuORF	ENST00000259526.3_1_8:120428798-120429168:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.277206	1028.53986	-0.82672	-0.00042599	-0.69278	-0.00035698	-1.5195	-0.00078296	515.2767568280539	73.682	0.35094	73.692	73.402	73.753	0.0096512	0.027145	0.00087329	NaN	23.042	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1522900			43768	11437	30239	30290							0.026731129846211843
LLMLSPPVPP	10	Unmodified	_LLMLSPPVPP_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7970581054688	2	532.314646	1062.61474	-1.8408	-0.00097991	0.69368	0.00036925	-1.1472	-0.00061066	532.3151484559655	90.68	0.50226	90.68	90.427	90.929	0					16	11	2	0	0	0	0.03519	1	11505	11505		30.504	5.9844	1	90224			43769	17863	30240	30291	49225	49225					0.08593618787472224
LLMMAAAAD	9	Unmodified	_LLMMAAAAD_					0	0	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2179260253906	2	453.724806	905.43506	0.29922	0.00013576	-0.42049	-0.00019079	-0.12127	-5.5024E-05	453.7229572217554	59.521	0.36709	59.272	59.09	59.457	-0.24842					11	8	2	0	0	0	0.024412	1	6558	6558		24.203	7.7296	1	65094	+		43770	26507	30241	30292	49226	49226					-0.021440084919731817
LLMNKKLLT	9	Unmodified	_LLMNKKLLT_					0	0	0			REV__ENSG00000176102|ENST00000323959|CSTF3	REV__ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.30517578125	2	537.341195	1072.66784	-0.70015	-0.00037622	0.9123	0.00049022	0.21215	0.000114	537.3417135642259	68.619	0.34795	68.619	68.369	68.717	0					13	8	2	0	0	0	0.024506	1	8206	8206		30.504	0	1	159010	+		43771	26995	30242	30293	49227	49227					0.13440996570147945
LLMRSIGNKN	10	Unmodified	_LLMRSIGNKN_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.3267211914062	2	573.326608	1144.63866	-0.5235	-0.00030014	-1.2933	-0.00074146	-1.8168	-0.0010416	573.3256531057511	72.733	1.347	72.535	72.248	73.595	-0.19811					59	32	4	0	0	0	0.91678	1	8544	8544		52.937	0	1	1057800			43772	6555	30243	30294	49228	49228					0.0721285227386943
LLMSLEELI	9	Unmodified	_LLMSLEELI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.80126953125	2	530.801568	1059.58858	0.067051	3.5591E-05	-0.078682	-4.1765E-05	-0.011632	-6.174E-06	530.801319543455	101.17	0.88271	101	100.77	101.65	-0.17178					47	19	3	0	0	0	0.26797	1	12569	12569		79.939	8.5613	1	1205000			43773	6301	30244	30295	49229	49229					0.06117304825352221
LLMSRLTDV	9	Unmodified	_LLMSRLTDV_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2943725585938	2	524.296985	1046.57942	-0.48822	-0.00025597	1.028	0.00053896	0.53975	0.00028299	524.2974061099324	100.39	1.4136	100.39	99.871	101.28	0					101	34	5	0	0	0	0.31037	1	12922	12922		74.255	2.3776	1	3300600	+		43774	27294	30245	30296	49230	49230					0.05798956259673105
LLMSRLTDV	9	Unmodified	_LLMSRLTDV_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2969360351562	2	524.296985	1046.57942	0.31866	0.00016707	0.32581	0.00017082	0.64447	0.0003379	524.2970509151143	100.44	1.3456	100.44	100.01	101.36	-0.0050812					96	34	5	0	0	0	0.11092	1	12820	12820		108.09	17.311	1	3281700	+		43775	27294	30245	30296	49231	49231					0.05798956259673105
LLMSVEILR	9	Unmodified	_LLMSVEILR_					0	0	0		ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant;ADGRB3|p.D1453Gfs*26|1|0.38|ENSG00000135298|chr6:69382909-69382910|-/G|frameshift_variant;ENSG00000135298|ENST00000370598|ADGRB3	ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.3232421875	2	537.323002	1072.63145	-0.84882	-0.00045609	0.51544	0.00027696	-0.33338	-0.00017913	537.3232041332304	81.598	1.3378	81.598	80.899	82.237	0					47	29	2	0	0	0	0.12602	1	10163	10163		104.75	13.97	1	1443900			43776	34	30246	30297	49232	49232					0.09804119673435707
LLMTLGQQ	8	Unmodified	_LLMTLGQQ_					0	0	0		AK3-RCL1|1|fusion;ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1	AK3-RCL1|1|fusion	AK3-RCL1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2522277832031	2	452.252046	902.489538	0.40867	0.00018482	0.42545	0.00019241	0.83411	0.00037723	452.25215478079406	104.61	0.90871	104.45	104.18	105.09	-0.16484					58	30	2	0	0	0	0.96769	1	13026	13026		42.396	0	1	1408700			43777	54	30247	30298	49233	49233					0.0343932665111879
LLMTSLTES	9	Unmodified	_LLMTSLTES_					0	0	0		ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7578125	2	497.759901	993.505248	0.35435	0.00017638	3.0525	0.0015194	3.4069	0.0016958	497.76052960885585	68.116	0.80138	68.116	67.719	68.52	0					60	20	5	0	0	0	0.18915	1	8150	8150		90.777	19.399	1	848430			43778	8598	30248	30299	49234	49234					0.008235683774842073
LLMTSLTES	9	Unmodified	_LLMTSLTES_					0	0	0		ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.75830078125	2	497.759901	993.505248	0.14702	7.3183E-05	2.2873	0.0011385	2.4343	0.0012117	497.76060042255693	68.423	0.73701	68.13	67.743	68.48	-0.29267					39	18	3	0	0	0	0.13494	1	8168	8168		102.77	31.395	1	741970			43779	8598	30248	30299	49235	49235					0.008235683774842073
LLMTSLTES	9	Unmodified	_LLMTSLTES_					0	0	0		ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.75830078125	2	497.759901	993.505248	0.43718	0.00021761	2.2687	0.0011293	2.7059	0.0013469	497.7609716967669	68.159	1.0146	68.178	67.819	68.833	0.018913					49	26	3	0	0	0	0.22754	1	8078	8078		85.359	33.06	1	1052000			43780	8598	30248	30299	49236	49236					0.008235683774842073
LLMTWALEV	9	Unmodified	_LLMTWALEV_					0	0	0		ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	ENST00000523028.5_1_16:21892164-21910369:-|nuORF	ENST00000523028.5_1_16:21892164-21910369:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3280029296875	2	538.296453	1074.57835	-0.84514	-0.00045493	-3.6784	-0.0019801	-4.5235	-0.002435	538.2943756075135	81.797	0.65025	81.797	81.299	81.95	0					24	15	2	0	0	0	0.024354	1	10200	10200		47.916	3.7988	1	179160			43781	12046	30249	30300	49237	49237					0.044047418907666724
LLMVAVPII	9	Unmodified	_LLMVAVPII_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2663879394531	2	484.814282	967.614011	-0.2216	-0.00010744	4.3537	0.0021107	4.1321	0.0020033	484.8161920172525	67.308	1.5928	67.084	66.816	68.409	-0.22374					43	38	2	0	0	0	0.024389	1	7882	7882		49.211	6.8147	1	177250			43782	2368	30250	30301	49238	49238					0.12890824138446533
LLMVSHVK	8	Unmodified	_LLMVSHVK_					0	0	0		ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.77642822265625	2	463.778231	925.541908	0.23993	0.00011128	-3.8135	-0.0017686	-3.5736	-0.0016573	463.77628912674555	73.528	1.7868	73.538	73.068	74.854	0.0096512					72	43	2	0	0	0	0.56067	1	8920	8920		79.939	5.9645	1	3911000			43783	10276	30251	30302	49239	49239					0.07615909784738051
LLMVSHVK	8	Unmodified	_LLMVSHVK_					0	0	0		ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.778231	925.541908	-0.24449	-0.00011339	-2.586	-0.0011993	-2.8305	-0.0013127	463.7763178228399	73.515	0.47958	73.325	73.123	73.602	-0.19027	-0.14501	0.00082575	NaN	79.939	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71802			43784	10276	30251	30302							0.07615909784738051
LLNAACAPIL	10	Unmodified	_LLNAACAPIL_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80078125	2	499.788795	997.563038	-0.44906	-0.00022443	0.45899	0.0002294	0.0099333	4.9645E-06	499.78896653001124	31.459	0.28685	31.459	31.343	31.63	0					10	6	2	0	0	0	0.03519	1	2114	2114		53.351	0	1	46424			43785	37917	30252	30303	49240	49240					0.06415875093591694
LLNDNNLLL	9	Unmodified	_LLNDNNLLL_					0	0	0			REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.31884765625	2	521.300581	1040.58661	0.30678	0.00015992	-0.12569	-6.5525E-05	0.18108	9.4398E-05	521.3009299091885	85.782	0.54179	85.782	85.5	86.042	0					19	12	2	0	0	0	0.023417	1	10774	10774		79.451	13.022	1	147430	+		43786	19246	30253	30304	49241	49241					0.06794012131763338
LLNDNNLLL	9	Unmodified	_LLNDNNLLL_					0	0	0			REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.300581	1040.58661	0.032559	1.6973E-05	3.0938	0.0016128	3.1263	0.0016298	521.302395390926	85.826	0.25238	85.631	85.469	85.721	-0.19508	-0.051228	0.0016001	NaN	79.451	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41388	+		43787	19246	30253	30304							0.06794012131763338
LLNDNNLLL	9	Unmodified	_LLNDNNLLL_					0	0	0			REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.300581	1040.58661	0.9674	0.0005043	2.3226	0.0012108	3.29	0.0017151	521.8029643719177	85.683	0.37846	85.534	85.368	85.747	-0.14967	-0.14799	0.0007961	NaN	79.451	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33539	+		43788	19246	30253	30304							0.06794012131763338
LLNEILEQV	9	Unmodified	_LLNEILEQV_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.8084716796875	2	535.808239	1069.60193	0.31502	0.00016879	-0.83767	-0.00044883	-0.52266	-0.00028004	535.8079442060878	84.968	1.7586	84.968	84.628	86.386	0					85	41	3	0	0	0	0.013337	3	10662	10637;10648;10662		209.19	65.308	1	2003900			43789	2999	30254	30305	49242;49243;49244	49244					0.06990878928968414
LLNEILEQV	9	Unmodified	_LLNEILEQV_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.808349609375	2	535.808239	1069.60193	-0.93924	-0.00050325	0.34328	0.00018393	-0.59595	-0.00031932	535.8085788575313	84.938	1.0803	84.881	84.563	85.643	-0.057617					61	25	3	0	0	0	0.015032	3	10619	10597;10607;10619		195.05	32.932	1	2010300			43790	2999	30254	30305	49245;49246;49247	49247					0.06990878928968414
LLNEILEQV	9	Unmodified	_LLNEILEQV_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.8081665039062	2	535.808239	1069.60193	-1.0605	-0.00056824	0.45434	0.00024344	-0.60618	-0.0003248	535.8085757146115	84.896	2.0596	84.921	84.579	86.639	0.025528					89	48	3	0	0	0	0.014475	3	10565	10554;10565;10579		185.72	49.45	1	1954400			43791	2999	30254	30305	49248;49249;49250	49249					0.06990878928968414
LLNEILEQV	9	Unmodified	_LLNEILEQV_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.808239	1069.60193	0.16084	8.618E-05	-0.81266	-0.00043543	-0.65182	-0.00034925	535.8079776813904	84.963	1.428	84.76	84.459	85.887	-0.20329	-0.11045	-0.00059163	NaN	185.72	66	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417940			43792	2999	30254	30305							0.06990878928968414
LLNEILEQV	9	Unmodified	_LLNEILEQV_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.808239	1069.60193	0.4049	0.00021695	-0.53052	-0.00028426	-0.12562	-6.7309E-05	535.8078547377859	84.98	1.0371	84.821	84.446	85.483	-0.15869	-0.049031	-0.00028929	NaN	185.72	71	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392370			43793	2999	30254	30305							0.06990878928968414
LLNEILEQV	9	Unmodified	_LLNEILEQV_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.808239	1069.60193	-0.0049775	-2.667E-06	-0.70811	-0.00037941	-0.71309	-0.00038208	535.8079640230067	85.008	1.2534	84.871	84.449	85.702	-0.13753	0.00044452	-0.00047959	NaN	185.72	59	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367340			43794	2999	30254	30305							0.06990878928968414
LLNEKGILI	9	Unmodified	_LLNEKGILI_					0	0	0			REV__ENSG00000187522|ENST00000378372|HSPA14	REV__ENSG00000187522|ENST00000378372|HSPA14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.810302734375	2	506.823692	1011.63283	-0.23578	-0.0001195	-0.46881	-0.00023761	-0.70459	-0.0003571	506.822788667496	64.198	0.43802	63.97	63.825	64.263	-0.22773					14	10	2	0	0	0	0.019995	1	7311	7311		125.81	17.727	1	75354	+		43795	27938	30255	30306	49251	49251					0.12748077033870686
LLNELDDESVK	11	Unmodified	_LLNELDDESVK_					0	0	0			REV__ENSG00000146233|ENST00000275016|CYP39A1	REV__ENSG00000146233|ENST00000275016|CYP39A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.25653076171875	3	425.553997	1273.64016	-1.0964	-0.0004666	1.5543	0.00066144	0.45785	0.00019484	425.55425860279297	35.334	0.46	35.312	35.049	35.509	-0.021763					17	11	2	0	0	0	0.024735	1	2715	2715		21.78	3.9473	1	53173	+		43796	24471	30256	30307	49252	49252					0.01428720052922472
LLNERNLVG	9	Unmodified	_LLNERNLVG_					0	0	0			REV__ENST00000558993.1_1_20:39833672-39945572:-|nuORF	REV__ENST00000558993.1_1_20:39833672-39945572:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2987670898438	2	514.298373	1026.58219	-0.26021	-0.00013383	-0.61526	-0.00031643	-0.87547	-0.00045025	514.2978037910609	95.323	1.1741	95.171	94.667	95.842	-0.15186					65	26	4	0	0	0	0.77768	1	11776	11776		40.778	1.5253	1	1560600	+		43797	35107	30257	30308	49253	49253					0.0699654770885445
LLNFLACL	8	Unmodified	_LLNFLACL_					0	0	0		ENST00000472397.5_1_1:155226487-155230214:-|nuORF;ENST00000490999.5_1_1:155226066-155230310:-|nuORF;nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3	ENST00000472397.5_1_1:155226487-155230214:-|nuORF	ENST00000472397.5_1_1:155226487-155230214:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.748779296875	2	453.759507	905.50446	-0.011359	-5.1542E-06	3.0298	0.0013748	3.0184	0.0013696	453.7606401499417	81.284	0.7334	81.284	81.057	81.791	0					41	17	3	0	0	0	0.027866	1	10158	10158		37.028	0	1	448570			43798	3552	30258	30309	49254	49254					0.047928185191153716
LLNGDLDCQY	10	Unmodified	_LLNGDLDCQY_					0	0	0			REV__nc|ENSG00000162923|Q9H7D7-2|WDR26	REV__nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	577.7968139648438	2	577.263339	1152.51212	-0.85761	-0.00049506	4.0457	0.0023355	3.1881	0.0018404	577.2654680671097	42.572	0.73597	42.572	42.087	42.823	0					28	20	2	0	0	0	0.03519	1	3929	3929		40.778	3.6191	1	105160	+		43799	25509	30259	30310	49255	49255					-0.058031187419373964
LLNGEIDDED	10	Unmodified	_LLNGEIDDED_					0	0	0			REV__ENSG00000115155|ENST00000272371|OTOF	REV__ENSG00000115155|ENST00000272371|OTOF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.75439453125	2	566.753858	1131.49316	0.27945	0.00015838	0.95236	0.00053975	1.2318	0.00069813	566.7541225976161	50.664	0.77961	50.388	50.111	50.891	-0.27643					50	20	3	0	0	0	0.67706	1	5143	5143		68.787	7.8149	1	3815100	+		43800	22169	30260	30311	49256	49256					-0.0673237683199659
LLNHDFQSI	9	Unmodified	_LLNHDFQSI_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3187866210938	2	543.782556	1085.55056	0.58431	0.00031774	3.204	0.0017423	3.7883	0.00206	543.7837307082824	59.745	0.73652	59.745	59.444	60.181	0					32	19	2	0	0	0	0.024427	1	6837	6837		34.173	1.3601	1	216580	+		43801	29015	30261	30312	49257	49257					0.01120554954900399
LLNHDFQSI	9	Unmodified	_LLNHDFQSI_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.782556	1085.55056	0.77852	0.00042335	4.4032	0.0023944	5.1817	0.0028177	543.7852342980756	59.883	0.72015	59.686	59.38	60.1	-0.19742	0.036957	-0.00099973	NaN	34.173	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171760	+		43802	29015	30261	30312							0.01120554954900399
LLNHDFQSI	9	Unmodified	_LLNHDFQSI_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.782556	1085.55056	0.28213	0.00015342	5.1035	0.0027752	5.3856	0.0029286	543.7851235433773	59.731	0.56794	59.555	59.281	59.849	-0.1761	-0.094173	-0.00023813	NaN	34.173	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187330	+		43803	29015	30261	30312							0.01120554954900399
LLNHDFQSI	9	Unmodified	_LLNHDFQSI_					0	0	0			REV__ENSG00000249437|ENST00000517649|NAIP	REV__ENSG00000249437|ENST00000517649|NAIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.782556	1085.55056	-0.72206	-0.00039264	6.2241	0.0033846	5.5021	0.0029919	543.7859890037935	59.859	0.72239	59.61	59.335	60.058	-0.24842	-0.038726	0.00098064	NaN	34.173	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166440	+		43804	29015	30261	30312							0.01120554954900399
LLNIFDSSA	9	Unmodified	_LLNIFDSSA_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2589416503906	2	490.258382	978.502212	-0.68729	-0.00033695	-0.25279	-0.00012393	-0.94008	-0.00046088	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	0.72875	1	13178	13178		44.117	1.7207	1	5001000	+		43805	26221	30262	30313	49258	49258					0.012100613149982564
LLNINASEL	9	Unmodified	_LLNINASEL_					0	0	0			REV__ENST00000298119.8_1_14:42076845-42077079:+|nuORF	REV__ENST00000298119.8_1_14:42076845-42077079:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7793273925781	2	493.779482	985.544411	-0.27197	-0.00013429	0.3197	0.00015786	0.04773	2.3568E-05	493.77948364464703	24.072	0.90846	23.857	23.554	24.463	-0.21511					30	20	2	0	0	0	0.6504	1	1027	1027		49.442	1.7842	1	787120	+		43806	30020	30263	30314	49259	49259					0.05106036723384477
LLNKLYVIGG	10	Unmodified	_LLNKLYVIGG_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3353881835938	2	545.336967	1088.65938	-0.12412	-6.7689E-05	-3.3849	-0.0018459	-3.5091	-0.0019136	545.3350513773139	105.51	0.4071	105.51	105.32	105.73	0					22	9	3	0	0	0	1.1267	1	13573	13573		29.15	4.9468	1	219900			43807	2096	30264	30315	49260	49260					0.11859765925169086
LLNKSYFNP	9	Unmodified	_LLNKSYFNP_					0	0	0			REV__ENST00000517404.1_1_8:87486539-87487267:-|nuORF	REV__ENST00000517404.1_1_8:87486539-87487267:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.778076171875	2	548.295299	1094.57605	0.37132	0.00020359	-2.5978	-0.0014244	-2.2265	-0.0012208	548.2935885196906	64.244	0.21371	64.244	64.133	64.347	0					6	5	2	0	0	0	0.024323	1	7554	7554		27.882	0	1	47374	+		43808	27034	30265	30316	49261	49261					0.032540294773070855
LLNLKAKPI	9	Unmodified	_LLNLKAKPI_					0	0	0		ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.79876708984375	2	505.342052	1008.66955	-0.97193	-0.00049116	0.27296	0.00013794	-0.69898	-0.00035322	505.3416788353089	81.059	0.59699	80.928	80.701	81.298	-0.13075					23	14	2	0	0	0	0.024412	1	10026	10026		50.025	11.218	1	722540			43809	12998	30266	30317	49262	49262					0.16556373650416845
LLNLKWELLQK	11	Unmodified	_LLNLKWELLQK_					0	0	0			REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.6214904785156	3	466.622017	1396.84422	0.077056	3.5956E-05	-1.1603	-0.0005414	-1.0832	-0.00050545	466.6214109484827	46.874	0.52938	46.604	46.379	46.908	-0.26939					52	14	5	0	0	0	1.0878	1	4549	4549		14.694	0	1	5469600	+		43810	30657	30267	30318	49263	49263					0.16167329004929343
LLNLPTRVI	9	Unmodified	_LLNLPTRVI_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8372802734375	2	519.837134	1037.65972	0.60249	0.0003132	-0.074039	-3.8488E-05	0.52845	0.00027471	519.8369791235318	70.24	0.48982	69.947	69.673	70.163	-0.29291					23	13	3	0	0	0	0.53979	1	8454	8454		56.721	5.3856	1	4812800			43811	5446	30268	30319	49264	49264					0.1423918564505584
LLNLPTRVI	9	Unmodified	_LLNLPTRVI_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.8370361328125	2	519.837134	1037.65972	-0.55875	-0.00029046	1.2517	0.00065066	0.69291	0.0003602	519.8377031345655	69.954	0.47409	69.966	69.751	70.225	0.012421					18	12	2	0	0	0	0.56934	1	8375	8375		54.776	0	1	3629600			43812	5446	30268	30319	49265	49265					0.1423918564505584
LLNLSSFAV	9	Unmodified	_LLNLSSFAV_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.7708740234375	2	482.279118	962.543683	0.16986	8.1918E-05	0.11748	5.6658E-05	0.28734	0.00013858	482.2790045189785	83.202	0.51646	83.063	82.781	83.298	-0.13861					13	11	2	0	0	0	0.024323	1	10004	10004		35.618	0	1	45014	+		43813	23025	30269	30320	49266	49266					0.06091242074330694
LLNLVRLI	8	Unmodified	_LLNLVRLI_					0	0	0			REV__ENSG00000155530|ENST00000285928|LRGUK	REV__ENSG00000155530|ENST00000285928|LRGUK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.3289794921875	2	477.328945	952.643337	0.56814	0.00027119	-0.40108	-0.00019145	0.16706	7.9743E-05	477.3286412961257	78.544	2.5418	78.352	78.016	80.558	-0.1921					152	60	3	0	0	0	0.88442	1	9700	9700		52.299	4.3836	1	3530800	+		43814	25010	30270	30321	49267	49267					0.16512104478943002
LLNMSNLML	9	Unmodified	_LLNMSNLML_					0	0	0			REV__ENST00000330137.11_1_17:57188831-57189044:-|nuORF	REV__ENST00000330137.11_1_17:57188831-57189044:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7894287109375	2	524.780113	1047.54567	-0.70314	-0.00036899	-4.0722	-0.002137	-4.7754	-0.002506	525.2798998544532	60.824	0.27602	60.57	60.421	60.697	-0.25373					9	6	2	0	0	0	0.024294	1	6775	6775		65.803	0	1	118600	+		43815	30452	30271	30322	49268	49268					0.023802114962563792
LLNNNKKTT	9	Unmodified	_LLNNNKKTT_					0	0	0		ENST00000552054.1_1_12:115118611-115121104:-|nuORF	ENST00000552054.1_1_12:115118611-115121104:-|nuORF	ENST00000552054.1_1_12:115118611-115121104:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3042602539062	2	523.303655	1044.59276	0.26856	0.00014054	-0.17813	-9.3214E-05	0.090431	4.7323E-05	523.303622742998	99.956	1.0415	99.951	99.477	100.52	-0.0050812					58	26	4	0	0	0	0.91321	2	12700	12700;12729		31.53	1.2121	1	1507600			43816	16613	30272	30323	49269;49270	49269					0.07224530363282611
LLNNNKKTT	9	Unmodified	_LLNNNKKTT_					0	0	0		ENST00000552054.1_1_12:115118611-115121104:-|nuORF	ENST00000552054.1_1_12:115118611-115121104:-|nuORF	ENST00000552054.1_1_12:115118611-115121104:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3048706054688	2	523.303655	1044.59276	0.35837	0.00018754	-0.25747	-0.00013474	0.1009	5.28E-05	523.3034561801154	100.01	0.80638	99.881	99.471	100.28	-0.13364					42	23	2	0	0	0	0.82115	1	12391	12391		37.812	2.1932	1	1402800			43817	16613	30272	30323	49271	49271					0.07224530363282611
LLNNNKKTT	9	Unmodified	_LLNNNKKTT_					0	0	0		ENST00000552054.1_1_12:115118611-115121104:-|nuORF	ENST00000552054.1_1_12:115118611-115121104:-|nuORF	ENST00000552054.1_1_12:115118611-115121104:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3035888671875	2	523.303655	1044.59276	0.35068	0.00018351	-0.25796	-0.00013499	0.092721	4.8521E-05	523.3033589717056	90.251	1.1125	90.113	89.792	90.904	-0.13824					76	26	4	0	0	0	0.72875	1	11056	11056		44.117	5.3107	1	1624800			43818	16613	30272	30323	49272	49272					0.07224530363282611
LLNNNLILI	9	Unmodified	_LLNNNLILI_					0	0	0			REV__ENSG00000178235|ENST00000674365|SLITRK1	REV__ENSG00000178235|ENST00000674365|SLITRK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3305053710938	2	520.329142	1038.64373	-0.58303	-0.00030337	1.309	0.0006811	0.72595	0.00037773	520.3299963767871	69.806	0.86319	69.818	69.168	70.032	0.012421					45	21	3	0	0	0	0.22754	1	8352	8352		85.359	5.6469	1	8178600	+		43819	27179	30273	30324	49273	49273					0.12595479408150823
LLNPHQPI	8	Unmodified	_LLNPHQPI_					0	0	0		nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2535705566406	2	466.271627	930.528701	-0.21212	-9.8906E-05	3.1485	0.001468	2.9363	0.0013691	466.2727664870955	26.696	0.37954	26.528	26.301	26.68	-0.16816					15	8	2	0	0	0	0.027866	1	1391	1391		26.796	13.837	1	118870			43820	18622	30274	30325	49274	49274					0.06065794997005014
LLNQINLAN	9	Unmodified	_LLNQINLAN_					0	0	0			REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8237609863281	2	506.792924	1011.57129	0.43091	0.00021838	-1.8443	-0.00093469	-1.4134	-0.0007163	506.79078434857206	43.084	0.32798	43.115	42.939	43.267	0.030827					12	8	2	0	0	0	0.024436	1	3950	3950		38.806	0	1	68439	+		43821	37532	30275	30326	49275	49275					0.06597145334546894
LLNRFEVP	8	Unmodified	_LLNRFEVP_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.288330078125	2	494.284734	986.554916	0.05232	2.5861E-05	2.3442	0.0011587	2.3965	0.0011845	494.28491060975756	58.545	1.0496	58.358	58.173	59.222	-0.18705					43	28	2	0	0	0	0.65272	1	6629	6629		71.378	2.5911	1	10034000	+		43822	21779	30276	30327	49276	49276					0.06110064168467488
LLNSASDPSL	10	Unmodified	_LLNSASDPSL_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.76458740234375	2	508.766571	1015.51859	-0.17918	-9.1158E-05	0.064027	3.2575E-05	-0.11515	-5.8584E-05	508.7664582786257	66.052	0.96021	65.811	65.414	66.375	-0.24145					52	23	4	0	0	0	0.6365	1	7559	7559		72.879	4.0924	1	1746100			43823	5849	30277	30328	49277	49277					0.011451424810957178
LLNSQYNV	8	Unmodified	_LLNSQYNV_					0	0	0			REV__ENSG00000139537|ENST00000320516|CCDC65	REV__ENSG00000139537|ENST00000320516|CCDC65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7876281738281	2	475.750724	949.486896	2.1735	0.001034	-1.3349	-0.00063509	0.83853	0.00039893	475.74990820966747	59.771	0.36	59.771	59.52	59.88	0					18	9	2	0	0	0	0.027866	1	6815	6815		29.15	0	1	265830	+		43824	23945	30278	30329	49278	49278					0.010131945178045498
LLNSYTTKT	9	Unmodified	_LLNSYTTKT_					0	0	0			REV__CAGE1|p.H588Y|1|0.14|ENSG00000164304|chr6:7370050-7370050|G/A|missense_variant	REV__CAGE1|p.H588Y|1|0.14|ENSG00000164304|chr6:7370050-7370050|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.301513671875	2	520.784764	1039.55498	-1.7401	-0.00090624	2.0517	0.0010685	0.31155	0.00016225	520.7856391404273	60.516	0.78493	60.595	60.318	61.103	0.078888					61	20	4	0	0	0	0.023635	1	6910	6910		76.774	15.802	1	3493300	+		43825	19238	30279	30330	49279	49279					0.036780193777985914
LLNTILVKD	9	Unmodified	_LLNTILVKD_					0	0	0		ENST00000474780.1_1_3:19987557-19988503:-|nuORF	ENST00000474780.1_1_3:19987557-19988503:-|nuORF	ENST00000474780.1_1_3:19987557-19988503:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	514.82115	1027.62775	-0.24678	-0.00012705	2.3356	0.0012024	2.0888	0.0010754	514.8224432830086	67.51	0.24389	67.534	67.43	67.674	0.023911					8	5	2	0	0	0	0.024374	1	7967	7967		32.812	0	1	44473			43826	15040	30280	30331	49280	49280					0.11503773171239118
LLNTLLVLV	9	Unmodified	_LLNTLLVLV_					0	0	0			REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	REV__LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.3247375488281	2	499.336436	996.658318	1.3857	0.00069191	4.2999	0.0021471	5.6856	0.002839	499.33865828435694	63.718	0.39557	63.718	63.522	63.917	0					16	10	2	0	0	0	0.022083	1	7442	7442		111.65	3.5608	1	400440	+		43827	20287	30281	30332	49281	49281					0.15985551556286737
LLNVEHDV	8	Unmodified	_LLNVEHDV_					0	0	0			REV__ENSG00000146386|ENST00000367660|ABRACL	REV__ENSG00000146386|ENST00000367660|ABRACL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.7515869140625	2	469.750724	937.486896	0.35944	0.00016885	-0.5079	-0.00023859	-0.14846	-6.9741E-05	469.7504089355473	54.183	1.7013	54.035	53.711	55.413	-0.14723					117	48	4	0	0	0	0.35998	1	5908	5908		102.77	17.414	1	10362000	+		43828	24485	30282	30333	49282	49282					0.01565194517809232
LLNVEHDV	8	Unmodified	_LLNVEHDV_					0	0	0			REV__ENSG00000146386|ENST00000367660|ABRACL	REV__ENSG00000146386|ENST00000367660|ABRACL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.7510986328125	2	469.750724	937.486896	0.72202	0.00033917	-0.875	-0.00041103	-0.15298	-7.1864E-05	469.7502258095601	53.888	1.6277	53.986	53.667	55.294	0.098015					114	46	5	0	0	0	0.35998	1	5808	5808		102.77	5.3007	1	12226000	+		43829	24485	30282	30333	49283	49283					0.01565194517809232
LLNVEVPQKV	10	Unmodified	_LLNVEVPQKV_					0	0	0		ENST00000528375.1_1_11:61905314-61909007:+|nuORF;ENST00000528037.1_1_11:61891511-61905356:+|nuORF;nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP	ENST00000528375.1_1_11:61905314-61909007:+|nuORF	ENST00000528375.1_1_11:61905314-61909007:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.8457641601562	2	569.845156	1137.67576	-0.67345	-0.00038376	1.3533	0.0007712	0.6799	0.00038744	569.8458069104875	38.496	1.0276	38.414	38.116	39.143	-0.082512					80	27	4	0	0	0	1.0122	1	3233	3233		44.377	1.981	1	1830600			43830	6097	30283	30334	49284	49284					0.11242847091261865
LLNVEYMM	8	Unmodified	_LLNVEYMM_					0	0	0		nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3;ENST00000553959.1_1_14:93125773-93154048:+|nuORF	nc|ENSG00000100599|Q8TB24-4|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	MSMS	OPSCC_39_ClassI_Rep-3	3	506.7460021972656	2	506.745739	1011.47692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.963	1	81.989	81.489	82.489	0.025711								0	0	0	0.38842	1	10147	10147		68.485	2.0554	1				43831	2226	30284	30335	49285	49285					-0.028354528034356008
LLNVFEEYI	9	Unmodified	_LLNVFEEYI_					0	0	0		FAM9B|p.L109F|1|0.13|ENSG00000177138|chrX:9029375-9029375|G/A|missense_variant	FAM9B|p.L109F|1|0.13|ENSG00000177138|chrX:9029375-9029375|G/A|missense_variant	FAM9B|p.L109F|1|0.13|ENSG00000177138|chrX:9029375-9029375|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.3025512695312	2	570.30279	1138.59103	0.042942	2.449E-05	-0.21393	-0.00012201	-0.17099	-9.7515E-05	570.3026134813938	99.209	1.4706	99.219	98.356	99.827	0.010239					131	33	5	0	0	0	0.31247	1	12630	12630		73.975	10.668	1	2890600			43832	17636	30285	30336	49286	49286					0.02727476554673558
LLNVKMALD	9	Unmodified	_LLNVKMALD_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000135406|P41219-2|PRPH;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES;ENSG00000277586|ENST00000610854|NEFL;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	ENSG00000026025|ENST00000544301|VIM;ENSG00000175084|ENST00000373960|DES;ENSG00000277586|ENST00000610854|NEFL;nc|ENSG00000100285|P12036-2|NEFH	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8133544921875	2	508.794078	1015.5736	0.047169	2.3999E-05	0.32351	0.0001646	0.37068	0.0001886	508.79416210012886	93.609	1.2561	93.487	92.884	94.14	-0.12215					62	28	3	0	0	0	0.024541	1	11452	11452		12.207	0	1	238630			43833	992;11058;2167;8525	30286	30337	49287	49287					0.06643857748008486
LLNVKSNL	8	Unmodified	_LLNVKSNL_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2637023925781	2	450.779285	899.544017	-0.35223	-0.00015878	0.49866	0.00022479	0.14643	6.6008E-05	450.77936211688365	60.411	0.81628	60.411	60.104	60.921	0					44	21	3	0	0	0	0.027866	1	7023	7023		24.203	0	1	884350			43834	8799	30287	30338	49288	49288					0.09022661794188025
LLNVSSLPP	9	Unmodified	_LLNVSSLPP_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2792663574219	2	470.279118	938.543683	-0.076771	-3.6104E-05	0.82128	0.00038623	0.74451	0.00035013	470.2793582758717	75.724	1.1156	75.48	75.229	76.344	-0.24455					66	29	3	0	0	0	0.15889	1	9289	9289		97.473	0	1	2871400	+		43835	25860	30288	30339	49289	49289					0.07195242074340058
LLNYTGPPTI	10	Unmodified	_LLNYTGPPTI_					0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8359985351562	2	544.802957	1087.59136	-0.084392	-4.5977E-05	-0.21369	-0.00011642	-0.29808	-0.00016239	544.8027701837369	71.95	0.47626	71.675	71.433	71.91	-0.2751					28	11	4	0	0	0	0.03519	1	8387	8387		42.396	28.942	1	486690	+		43836	27187	30289	30340	49290	49290					0.05106896274537576
LLNYVIAQK	9	Unmodified	_LLNYVIAQK_					0	0	0			REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7971801757812	2	531.321317	1060.62808	-0.68999	-0.0003666	-3.685	-0.0019579	-4.375	-0.0023245	531.319452090534	93.628	1.6585	93.634	93.265	94.924	0.0059814					106	39	5	0	0	0	0.024487	1	11855	11855		40.573	24.099	1	3894200	+		43837	28244	30290	30341	49291	49291					0.10019192891104467
LLPAADLL	8	Unmodified	_LLPAADLL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.2559509277344	2	413.257654	824.500755	1.1177	0.00046192	-3.6975	-0.001528	-2.5797	-0.0010661	413.256126065872	96.466	0.52382	96.472	96.269	96.793	0.0065079					22	11	2	0	0	0	0.9224	2	12271	12271;12283		49.211	2.4444	1	347410			43838	2521	30291	30342	49292;49293	49292					0.08148472016898722
LLPALSVEL	9	Unmodified	_LLPALSVEL_					0	0	0		ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7971496582031	2	477.797143	953.579734	1.1591	0.00055384	-1.1256	-0.0005378	0.033575	1.6042E-05	477.7965293272773	96.337	2.6643	96.339	95.395	98.06	0.0020676					149	61	4	0	0	0	0.40179	1	12232	12232		65.803	0	1	9914000			43839	15551	30292	30343	49294	49294					0.10108699251179587
LLPAPAVEHIV	11	Unmodified	_LLPAPAVEHIV_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7537231445312	2	579.847699	1157.68084	0.12541	7.2717E-05	-2.109	-0.0012229	-1.9836	-0.0011502	579.8476334980801	75.117	0.2108	74.841	74.72	74.931	-0.27573					6	4	2	0	0	0	0.024729	1	8869	8869		21.96	1.013	1	34491			43840	7061	30293	30344	49295	49295					0.10831150953890756
LLPAVAHGGNY	11	Unmodified	_LLPAVAHGGNY_					0	0	0		ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-3|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2950439453125	2	556.298373	1110.58219	0.18915	0.00010522	-1.8583	-0.0010338	-1.6691	-0.00092854	556.297280756981	107.21	0.50556	107.21	106.96	107.47	0.0018311					25	13	2	0	0	0	1.0054	1	13697	13697		35.618	2.8059	1	150730			43841	5612	30294	30345	49296	49296					0.03132547708855782
LLPAWIRQ	8	Unmodified	_LLPAWIRQ_					0	0	0			REV__ENST00000490180.2_1_14:65197520-65198405:+|nuORF	REV__ENST00000490180.2_1_14:65197520-65198405:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.80352783203125	2	498.803094	995.591636	-0.032016	-1.5969E-05	0.76347	0.00038082	0.73146	0.00036485	498.80335500721344	52.799	1.1628	52.891	52.674	53.836	0.091938					99	31	4	0	0	0	1.0572	1	5627	5627		28.254	1.4582	1	12396000	+		43842	33695	30295	30346	49297	49297					0.09366360785020333
LLPCIKCTSC	10	Unmodified	_LLPCIKCTSC_					0	0	0		ENST00000244061.5_1_20:48570270-48570396:+|nuORF	ENST00000244061.5_1_20:48570270-48570396:+|nuORF	ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7639770507812	2	540.766148	1079.51774	-0.15462	-8.3614E-05	-3.131	-0.0016931	-3.2856	-0.0017768	540.7643553531553	49.856	1.6841	49.751	49.373	51.057	-0.10558					123	44	5	0	0	0	0.98754	1	5082	5082		47.657	1.7054	1	11601000			43843	11299	30296	30347	49298	49298					-0.018834347554729902
LLPCLLPGW	9	Unmodified	_LLPCLLPGW_					0	0	0			REV__ENST00000560078.1_1_15:41106223-41106421:+|nuORF	REV__ENST00000560078.1_1_15:41106223-41106421:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8226318359375	2	506.288431	1010.56231	-0.5903	-0.00029886	-3.1362	-0.0015878	-3.7265	-0.0018867	506.2866189121416	60.349	0.39946	60.172	59.922	60.322	-0.1761					14	9	2	0	0	0	0.024389	1	6720	6720		29.842	4.2675	1	74725	+		43844	35132	30297	30348	49299	49299					0.057450804445238646
LLPDCDTYF	9	Unmodified	_LLPDCDTYF_					0	0	0			REV__ENSG00000105641|ENST00000222248|SLC5A5	REV__ENSG00000105641|ENST00000222248|SLC5A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8107299804688	2	543.74425	1085.47395	-0.9069	-0.00049312	2.13	0.0011582	1.2231	0.00066504	543.7452434360455	43.854	0.26982	43.749	43.583	43.853	-0.10468					12	6	2	0	0	0	0.024517	1	4063	4063		19.36	12.167	1	186130	+		43845	21547	30298	30349	49300	49300					-0.06537004656593126
LLPDCDTYF	9	Unmodified	_LLPDCDTYF_					0	0	0			REV__ENSG00000105641|ENST00000222248|SLC5A5	REV__ENSG00000105641|ENST00000222248|SLC5A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.74425	1085.47395	-1.6028	-0.0008715	0.26624	0.00014477	-1.3365	-0.00072673	543.7436593944124	44.049	0.19262	43.829	43.672	43.864	-0.21938	0.039962	-0.00088307	NaN	18.324	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125500	+		43846	21547	30298	30349							-0.06537004656593126
LLPDNILQV	9	Unmodified	_LLPDNILQV_					0	0	0		NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;ENST00000478884.5_1_2:203881095-203927086:+|nuORF;ENST00000460416.2_1_2:203881095-203914720:+|nuORF	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.28466796875	2	512.8055	1023.59645	-0.73955	-0.00037925	-0.7864	-0.00040327	-1.5259	-0.00078252	512.8061721450447	61.794	0.26225	61.794	61.643	61.906	0					8	6	2	0	0	0	0.024495	1	7172	7172		26.693	3.6504	1	37906			43847	5738	30299	30350	49301	49301					0.08559200137131029
LLPDSDVEI	9	Unmodified	_LLPDSDVEI_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.76434326171875	2	500.763497	999.512442	0.45183	0.00022626	-0.75301	-0.00037708	-0.30118	-0.00015082	500.763125712338	99.574	0.91721	99.574	98.912	99.829	0					42	20	3	0	0	0	0.67308	1	12714	12714		47.916	3.3845	1	400030			43848	10297	30300	30351	49302	49302					0.012666242495811275
LLPDSDVEI	9	Unmodified	_LLPDSDVEI_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.76348876953125	2	500.763497	999.512442	0.41319	0.00020691	-0.71618	-0.00035864	-0.30299	-0.00015173	500.7631175787896	99.66	0.72955	99.655	99.21	99.939	-0.0050888					37	16	3	0	0	0	0.17455	2	12658	12658;12671		94.006	25.522	1	604480			43849	10297	30300	30351	49303;49304	49303					0.012666242495811275
LLPDSDVEI	9	Unmodified	_LLPDSDVEI_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	500.763497	999.512442	-0.00619	-3.0997E-06	-0.13013	-6.5162E-05	-0.13632	-6.8262E-05	500.76340134071575	99.566	0.78098	99.576	99.046	99.827	0.010231	-0.053999	0.00041223	NaN	94.006	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500290			43850	10297	30300	30351							0.012666242495811275
LLPDSDVEI	9	Unmodified	_LLPDSDVEI_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.763497	999.512442	-0.30412	-0.00015229	-0.50635	-0.00025356	-0.81047	-0.00040585	500.7635204786543	99.886	0.46506	99.715	99.361	99.826	-0.17088	0.084856	3.5432E-05	NaN	94.006	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84792			43851	10297	30300	30351							0.012666242495811275
LLPDSPAQLAL	11	Unmodified	_LLPDSPAQLAL_					0	0	0			REV__ENST00000552916.5_1_12:56965569-56983042:+|nuORF	REV__ENST00000552916.5_1_12:56965569-56983042:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7489013671875	2	569.329339	1136.64412	0.12233	6.9645E-05	3.4921	0.0019882	3.6145	0.0020578	569.8340953797941	69.98	0.12534	69.729	69.649	69.775	-0.25063					4	2	2	0	0	0	0.024756	1	8146	8146		44.377	15.228	1	37152	+		43852	34965	30301	30352	49305	49305					0.08126854337297118
LLPEDYVWC	9	Unmodified	_LLPEDYVWC_					0	0	0			REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.267822265625	2	569.267893	1136.52123	-0.027525	-1.5669E-05	-0.34244	-0.00019494	-0.36997	-0.00021061	569.2676179559305	24.453	1.5092	24.238	23.733	25.243	-0.2151					90	34	4	0	0	0	0.72268	2	1037	1037;1063		44.531	11.719	1	2498100	+		43853	22376	30302	30353	49306;49307	49306					-0.04156725385610116
LLPEDYVWC	9	Unmodified	_LLPEDYVWC_					0	0	0			REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2673950195312	2	569.267893	1136.52123	-0.21662	-0.00012331	-0.32826	-0.00018687	-0.54488	-0.00031018	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	0.72268	1	953	953		44.531	6.7195	1	3402100	+		43854	22376	30302	30353	49308	49308					-0.04156725385610116
LLPEDYVWC	9	Unmodified	_LLPEDYVWC_					0	0	0			REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2678833007812	2	569.267893	1136.52123	-0.033071	-1.8826E-05	-0.22508	-0.00012813	-0.25815	-0.00014696	569.2676691973824	24.287	1.2505	24.113	23.743	24.993	-0.17484					80	27	5	0	0	0	0.72268	1	1032	1032		44.531	0.15388	1	2920100	+		43855	22376	30302	30353	49309	49309					-0.04156725385610116
LLPEEALL	8	Unmodified	_LLPEEALL_					0	0	0			REV__ENSG00000100099|ENST00000398145|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.8658752441406	2	449.268219	896.521884	-0.73997	-0.00033244	-1.8805	-0.00084484	-2.6204	-0.0011773	449.26657008232144	48.215	0.30515	47.939	47.775	48.08	-0.27598					13	7	3	0	0	0	0.027866	1	4753	4753		19.36	0	1	92781	+		43856	21048	30303	30354	49310	49310					0.06948437325752366
LLPEEISI	8	Unmodified	_LLPEEISI_					0	0	0		ENST00000596663.5_1_2:56403161-56411872:-|nuORF	ENST00000596663.5_1_2:56403161-56411872:-|nuORF	ENST00000596663.5_1_2:56403161-56411872:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2643737792969	2	457.265676	912.516799	-0.036934	-1.6889E-05	-2.8862	-0.0013198	-2.9232	-0.0013367	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.95417	1	10155	10155		44.531	2.0566	1	3048400			43857	17436	30304	30355	49311	49311					0.057041334631549034
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.7682800292969	2	453.768386	905.522219	-0.018336	-8.3202E-06	0.27713	0.00012575	0.2588	0.00011743	453.76833923046115	71.191	0.8445	70.934	70.564	71.408	-0.25713					44	19	3	0	0	0	0.14199	1	8307	8307		101.21	5.1639	1	976210			43858	1144	30305	30356	49312	49312					0.06567857045604342
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	453.768386	905.522219	1.0776	0.00048897	-0.75206	-0.00034126	0.32551	0.0001477	453.7678492212813	71.2	0.91837	70.912	70.546	71.464	-0.28858	-0.028342	-0.00046765	NaN	101.21	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2215200			43859	1144	30305	30356							0.06567857045604342
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.768386	905.522219	0.19125	8.6785E-05	0.24613	0.00011168	0.43738	0.00019847	453.76826774968947	70.977	0.95132	70.988	70.593	71.544	0.010735	0.047644	0.00043824	NaN	101.21	58	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1963800			43860	1144	30305	30356							0.06567857045604342
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	453.768386	905.522219	0.35963	0.00016319	-0.078012	-3.5399E-05	0.28162	0.00012779	453.76818159868327	71.267	0.89488	70.995	70.658	71.552	-0.27205	0.055134	0.00014408	NaN	101.21	51	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981010			43861	1144	30305	30356							0.06567857045604342
LLPEGPPAI	9	Unmodified	_LLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	453.768386	905.522219	0.67202	0.00030494	-0.26735	-0.00012132	0.40467	0.00018363	453.7680658020568	71.124	1.0431	70.914	70.61	71.653	-0.2107	-0.0264	-2.7759E-05	NaN	101.21	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	815810			43862	1144	30305	30356							0.06567857045604342
LLPEIREKI	9	Unmodified	_LLPEIREKI_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2892456054688	2	555.847699	1109.68084	0.26697	0.00014839	-0.53977	-0.00030003	-0.2728	-0.00015163	555.8473191170641	67.564	0.54776	67.564	67.245	67.792	0					28	13	3	0	0	0	0.024263	1	8051	8051		71.296	0	1	278560			43863	4651;16166	30306	30357	49313	49313					0.13039150953886747
LLPELLSA	8	Unmodified	_LLPELLSA_					0	0	0		ENSG00000221829|ENST00000378643|FANCG;ENST00000461149.1_1_9:35078119-35078602:-|nuORF	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2615051269531	2	428.262936	854.51132	-0.84173	-0.00036048	-1.8293	-0.00078343	-2.671	-0.0011439	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0574	1	11490	11490		13.775	0	1	86056000			43864	10612	30307	30358	49314	49314					0.07824454671322201
LLPELLSA	8	Unmodified	_LLPELLSA_					0	0	0		ENSG00000221829|ENST00000378643|FANCG;ENST00000461149.1_1_9:35078119-35078602:-|nuORF	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2619323730469	2	428.262936	854.51132	0.60688	0.0002599	-3.4974	-0.0014978	-2.8905	-0.0012379	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	0.96719	1	11121	11121		42.474	0	1	63872000			43865	10612	30307	30358	49315	49315					0.07824454671322201
LLPEPDRA	8	Unmodified	_LLPEPDRA_					0	0	0		ENST00000492244.5_1_1:155288033-155288472:+|nuORF	ENST00000492244.5_1_1:155288033-155288472:+|nuORF	ENST00000492244.5_1_1:155288033-155288472:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2250061035156	2	455.753267	909.491981	0.35301	0.00016089	-0.43895	-0.00020005	-0.08594	-3.9168E-05	455.75305193587815	51.746	0.32821	51.627	51.468	51.796	-0.11875					15	8	2	0	0	0	0.027866	1	5353	5353		47.916	0	1	201140			43866	15478	30308	30359	49316	49316					0.03361498380411376
LLPFHLYF	8	Unmodified	_LLPFHLYF_					0	0	0			REV__ENST00000379089.5_1_9:34400393-34400651:-|nuORF	REV__ENST00000379089.5_1_9:34400393-34400651:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3056030273438	2	525.294571	1048.57459	-1.0228	-0.00053728	-2.7657	-0.0014528	-3.7885	-0.0019901	525.292789980545	65.752	0.20736	65.538	65.463	65.67	-0.21327					11	4	3	0	0	0	0.027866	1	7520	7520		24.504	0	1	309700	+		43867	31425	30309	30360	49317	49317					0.05224440179222256
LLPFIVKR	8	Unmodified	_LLPFIVKR_					0	0	0			REV__ENST00000486433.5_1_12:56865273-56869736:-|nuORF	REV__ENST00000486433.5_1_12:56865273-56869736:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.30548095703125	2	493.331488	984.648422	0.037249	1.8376E-05	2.0614	0.001017	2.0987	0.0010353	493.33273601012826	85.077	0.32082	84.873	84.759	85.079	-0.20329					12	7	2	0	0	0	0.027866	1	10297	10297		37.028	1.8278	1	45539	+		43868	33591	30310	30361	49318	49318					0.15548408341555842
LLPFLGVLAL	10	Unmodified	_LLPFLGVLAL_					0	0	0		ENSG00000145354|ENST00000273986|CISD2	ENSG00000145354|ENST00000273986|CISD2	ENSG00000145354|ENST00000273986|CISD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7720336914062	2	528.346803	1054.67905	-0.2906	-0.00015354	-3.4658	-0.0018312	-3.7564	-0.0019847	528.3450055226563	55.883	0.35957	55.667	55.485	55.845	-0.21607					16	9	3	0	0	0	0.03519	1	6025	6025		44.531	17.735	1	117310			43869	5809	30311	30362	49319	49319					0.15390141935927204
LLPFLSLCL	9	Unmodified	_LLPFLSLCL_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8033142089844	2	509.803914	1017.59328	1.0443	0.00053241	-1.7691	-0.00090187	-0.72471	-0.00036946	509.80280499972037	98.265	0.97583	98.141	97.773	98.749	-0.12414					57	23	4	0	0	0	0.80658	1	12169	12169		38.806	6.8513	1	624670			43870	17518	30312	30363	49320	49320					0.08518233758763927
LLPGCLSFCA	10	Unmodified	_LLPGCLSFCA_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2533569335938	2	512.253731	1022.49291	0.0020289	1.0393E-06	-0.56313	-0.00028847	-0.5611	-0.00028743	512.2535245500372	53.952	2.95	54.05	53.631	56.581	0.098015					227	82	5	0	0	0	1.0004	1	5807	5807		45.952	1.8352	1	29194000	+		43871	27385	30313	30364	49321	49321					-0.017437465665466334
LLPGCLSFCA	10	Unmodified	_LLPGCLSFCA_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.25341796875	2	512.253731	1022.49291	0.46489	0.00023814	-1.5496	-0.00079378	-1.0847	-0.00055564	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.79525	1	5793	5793		60.972	13.056	1	42815000	+		43872	27385	30313	30364	49322	49322					-0.017437465665466334
LLPGFRVLN	9	Unmodified	_LLPGFRVLN_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2841186523438	2	514.816202	1027.61785	0.4257	0.00021916	-0.25259	-0.00013004	0.17311	8.9121E-05	514.8158622848395	84.384	1.3871	84.18	83.776	85.163	-0.20329					51	32	3	0	0	0	0.024436	1	10313	10313		47.916	1.9636	1	285700			43873	18258	30314	30365	49323	49323					0.10514629956514909
LLPGGLLE	8	Unmodified	_LLPGGLLE_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.875732421875	2	406.249829	810.485105	1.5552	0.00063179	-4.2132	-0.0017116	-2.658	-0.0010798	406.2478582100968	19.73	0.64158	19.53	19.255	19.897	-0.2001					23	12	3	0	0	0	0.027866	1	483	483		29.842	0	1	173910			43874	5169	30315	30366	49324	49324					0.07228185499843676
LLPGRAKGP	9	Unmodified	_LLPGRAKGP_					0	0	0		ENSG00000116218|ENST00000367615|NPHS2;nc|ENSG00000116218|Q9NP85-2|NPHS2	ENSG00000116218|ENST00000367615|NPHS2	ENSG00000116218|ENST00000367615|NPHS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.2371520996094	2	454.787444	907.560336	-0.83697	-0.00038064	0.1597	7.2632E-05	-0.67727	-0.00030801	454.7873657052617	43.564	0.38545	43.345	43.176	43.562	-0.21938					15	10	2	0	0	0	0.023775	1	3994	3994		47.916	5.4411	1	160530			43875	3536	30316	30367	49325	49325					0.1028578775093365
LLPGRGPL	8	Unmodified	_LLPGRGPL_					0	0	0			REV__ENST00000375155.7_1_1:19644098-19644251:+|nuORF	REV__ENST00000375155.7_1_1:19644098-19644251:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	411.7633972167969	2	411.763438	821.512323	0.20916	8.6126E-05	0.1777	7.3172E-05	0.38687	0.0001593	411.7632863476411	48.286	1.3011	48.353	47.97	49.271	0.066795					78	35	4	0	0	0	0.75307	1	4850	4850		62.978	5.5258	1	2768300	+		43876	31321	30317	30368	49326	49326					0.0944271383089017
LLPGRIRR	8	Unmodified	_LLPGRIRR_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-4|PATL1	REV__nc|ENSG00000166889|Q86TB9-4|PATL1	MSMS	OPSCC_39_ClassI_Rep-1	1	490.82855224609375	2	490.827435	979.640317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.436	1	66.436	65.936	66.936	0								0	0	0	0.78881	1	7905	7905		35.201	3.6709	1		+		43877	26075	30318	30369	49327	49327					0.1496827414478048
LLPHARLL	8	Unmodified	_LLPHARLL_					0	0	0			REV__ENST00000519104.5_1_6:114317083-114317191:+|nuORF	REV__ENST00000519104.5_1_6:114317083-114317191:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2638854980469	2	466.805637	931.596721	-0.29779	-0.00013901	1.6105	0.00075181	1.3127	0.0006128	466.80630384075266	30.737	0.62668	30.492	30.245	30.872	-0.24415					20	14	2	0	0	0	0.027866	1	1975	1975		13.775	0	1	102640	+		43878	34250	30319	30370	49328	49328					0.12818664647659261
LLPHFVLKI	9	Unmodified	_LLPHFVLKI_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|239|1|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|239|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3338623046875	2	540.35242	1078.69029	-1.3025	-0.00070379	4.324	0.0023365	3.0216	0.0016327	540.3559842981892	79.376	0.37024	79.203	79.029	79.399	-0.17226					14	8	3	0	0	0	0.024443	1	9790	9790		35.201	0	1	63495	+		43879	36270	30320	30371	49329	49329					0.15408964030075367
LLPHIEDED	9	Unmodified	_LLPHIEDED_					0	0	0			REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.76416015625	2	540.764029	1079.5135	-0.53455	-0.00028907	1.1836	0.00064007	0.64909	0.00035101	540.7645140691427	49.878	1.3574	49.727	49.33	50.687	-0.1512					105	38	3	0	0	0	0.60698	2	5141	5141;5189		52.299	4.3836	1	6169200	+		43880	28286	30321	30372	49330;49331	49330					-0.023071613815318415
LLPHINVH	8	Unmodified	_LLPHINVH_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.78802490234375	2	471.779619	941.544686	0.050251	2.3707E-05	-4.3576	-0.0020558	-4.3074	-0.0020321	471.7773867671522	24.046	0.25796	24.046	23.822	24.08	0					10	5	2	0	0	0	0.027866	1	996	996		49.211	14.01	1	255240			43881	6210	30322	30373	49332	49332					0.07157501233893981
LLPHIWGNV	9	Unmodified	_LLPHIWGNV_					0	0	0		nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	nc|ENSG00000213553|Q8NHW5|RPLP0P6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8289794921875	2	524.800552	1047.58655	0.2037	0.0001069	-0.99032	-0.00051972	-0.78662	-0.00041282	524.7994617450126	101.96	0.75067	101.83	101.36	102.11	-0.12931					26	17	2	0	0	0	0.024325	1	12668	12668		50.025	19.521	1	79414			43882	18712	30323	30374	49333	49333					0.06466056922408825
LLPHLEAKI	9	Unmodified	_LLPHLEAKI_					0	0	0		nc|ENSG00000150281|Q16619-2|CTF1;ENSG00000150281|ENST00000279804|CTF1	nc|ENSG00000150281|Q16619-2|CTF1	nc|ENSG00000150281|Q16619-2|CTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.30517578125	2	517.32386	1032.63317	0.37934	0.00019624	-3.3107	-0.0017127	-2.9313	-0.0015164	517.3228511574131	60.126	0.2619	59.929	59.838	60.1	-0.19742					10	6	2	0	0	0	0.024541	1	6702	6702		23.042	1.0826	1	586320			43883	6132	30324	30375	49334	49334					0.11815496753706611
LLPHLLPSK	9	Unmodified	_LLPHLLPSK_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;ENST00000525284.5_1_15:101565016-101602660:+|nuORF;ENST00000531270.5_1_15:101565016-101589971:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3055114746094	2	509.326402	1016.63825	-0.69046	-0.00035167	-3.9352	-0.0020043	-4.6256	-0.002356	509.32438000063564	22.29	0.33002	22.104	21.906	22.236	-0.18539					10	6	2	0	0	0	0.024323	1	766	766		35.618	6.4687	1	56572			43884	6392	30325	30376	49335	49335					0.1305980061632681
LLPHPCLRP	9	Unmodified	_LLPHPCLRP_					0	0	0			REV__TSFM-OS9|6|fusion	REV__TSFM-OS9|6|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.30419921875	2	523.302404	1044.59026	0.14151	7.4053E-05	2.1066	0.0011024	2.2481	0.0011764	523.3033649420273	100.12	1.0934	99.948	99.406	100.5	-0.17088					55	32	2	0	0	0	0.4855	1	12420	12420		60.294	21.488	1	1144200	+		43885	23550	30326	30377	49336	49336					0.06974403424624143
LLPHPCLRP	9	Unmodified	_LLPHPCLRP_					0	0	0			REV__TSFM-OS9|6|fusion	REV__TSFM-OS9|6|fusion	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	523.302404	1044.59026	0.14151	7.4053E-05	2.1066	0.0011024	2.2481	0.0011764	523.3033649420273	100.12	1.0934	99.948	99.406	100.5	-0.17088	0.053172	-0.00028245	NaN	60.294	55	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1144200	+		43886	23550	30326	30377							0.06974403424624143
LLPHPLELL	9	Unmodified	_LLPHPLELL_					0	0	0			REV__ENSG00000007968|ENST00000361729|E2F2	REV__ENSG00000007968|ENST00000361729|E2F2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2994995117188	2	522.826235	1043.63792	0.27657	0.0001446	0.65464	0.00034226	0.93121	0.00048686	522.826246223746	69.511	0.49082	69.261	69.033	69.524	-0.25063					25	11	3	0	0	0	0.024535	1	8047	8047		12.207	0	1	279820	+		43887	19873	30327	30378	49337	49337					0.11784380896460789
LLPIDCELS	9	Unmodified	_LLPIDCELS_					0	0	0		C8B|p.M61L|1|0.41|ENSG00000021852|chr1:56960088-56960088|T/A|missense_variant	C8B|p.M61L|1|0.41|ENSG00000021852|chr1:56960088-56960088|T/A|missense_variant	C8B|p.M61L|1|0.41|ENSG00000021852|chr1:56960088-56960088|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7640075683594	2	501.762443	1001.51033	-0.23043	-0.00011562	3.7384	0.0018758	3.5079	0.0017601	501.7642193662153	31.367	0.6779	31.436	31.208	31.886	0.06896					38	16	3	0	0	0	0.20304	1	2053	2053		88.643	16.765	1	1786900			43888	200	30328	30379	49338	49338					0.009638722401177802
LLPILEGT	8	Unmodified	_LLPILEGT_					0	0	0			REV__nc|ENSG00000166507|P52849-2|NDST2	REV__nc|ENSG00000166507|P52849-2|NDST2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2620544433594	2	428.262936	854.51132	0.49679	0.00021276	-3.3115	-0.0014182	-2.8147	-0.0012054	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0017	1	11332	11332		37.028	0	1	86424000	+		43889	36889	30329	30380	49339	49339					0.0782445467133357
LLPILFLL	8	Unmodified	_LLPILFLL_					0	0	0		ENSG00000176231|ENST00000322107|OR10H4	ENSG00000176231|ENST00000322107|OR10H4	ENSG00000176231|ENST00000322107|OR10H4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	471.32534	940.636126	0.49051	0.00023119	1.8775	0.00088492	2.368	0.0011161	471.3260991798651	50.033	0.15722	50.114	50.022	50.18	0.08099					7	4	2	0	0	0	0.027866	1	5141	5141		33.493	0	1	67598			43890	8624	30330	30381	49340	49340					0.16343371878519974
LLPITHVC	8	Unmodified	_LLPITHVC_					0	0	0		ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	ENSG00000163785|ENST00000623711|RYK	ENSG00000163785|ENST00000623711|RYK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2589416503906	2	448.257131	894.499709	0.41659	0.00018674	3.7428	0.0016777	4.1593	0.0018645	448.25867764123615	89.029	1.3807	89.029	88.555	89.936	0					85	32	4	0	0	0	1.0017	1	11247	11247		37.028	5.0736	1	7392500			43891	7143	30331	30382	49341	49341					0.04823934376338457
LLPITHVC	8	Unmodified	_LLPITHVC_					0	0	0		ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	ENSG00000163785|ENST00000623711|RYK	ENSG00000163785|ENST00000623711|RYK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2585754394531	2	448.257131	894.499709	0.35149	0.00015756	3.7748	0.0016921	4.1263	0.0018496	448.2586890631354	89.096	1.4611	89.112	88.623	90.084	0.015907					87	34	4	0	0	0	1.0017	1	11147	11147		37.028	1.8278	1	7395300			43892	7143	30331	30382	49342	49342					0.04823934376338457
LLPKEETIQV	10	Unmodified	_LLPKEETIQV_					0	0	0			REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.2705688476562	2	585.342446	1168.67034	-0.027952	-1.6361E-05	0.0044061	2.5791E-06	-0.023546	-1.3782E-05	585.342598177298	84.606	0.50777	84.468	84.28	84.788	-0.13789					17	11	2	0	0	0	0.03519	1	10264	10264		28.081	0.19925	1	89948	+		43893	25928	30332	30383	49343	49343					0.09275123508814431
LLPKEETIQV	10	Unmodified	_LLPKEETIQV_					0	0	0			REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	585.342446	1168.67034	-0.87727	-0.0005135	0.36852	0.00021571	-0.50875	-0.00029779	585.3423960040006	84.655	0.53596	84.655	84.463	84.999	0	0.11256	0.00038527	NaN	28.081	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181430	+		43894	25928	30332	30383							0.09275123508814431
LLPKEETIQV	10	Unmodified	_LLPKEETIQV_					0	0	0			REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	585.342446	1168.67034	-1.7307	-0.001013	1.1978	0.0007011	-0.53289	-0.00031192	585.3431473658864	84.634	0.57762	84.561	84.346	84.924	-0.072769	0.018864	0.0013561	NaN	28.081	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137260	+		43895	25928	30332	30383							0.09275123508814431
LLPKEETIQV	10	Unmodified	_LLPKEETIQV_					0	0	0			REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	585.342446	1168.67034	0.18518	0.00010839	-0.68527	-0.00040112	-0.50009	-0.00029273	585.3419664627564	84.603	0.57913	84.629	84.375	84.954	0.025826	0.087163	-0.00084838	NaN	28.081	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221500	+		43896	25928	30332	30383							0.09275123508814431
LLPKEETIQV	10	Unmodified	_LLPKEETIQV_					0	0	0			REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.342446	1168.67034	0.20083	0.00011755	-0.397	-0.00023238	-0.19617	-0.00011483	585.3421837062662	84.68	0.42146	84.476	84.294	84.716	-0.20329	-0.06588	-0.00051091	NaN	28.081	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91260	+		43897	25928	30332	30383							0.09275123508814431
LLPKEETIQV	10	Unmodified	_LLPKEETIQV_					0	0	0			REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	REV__ENST00000557167.1_1_14:21491318-21492212:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.342446	1168.67034	-0.015406	-9.0181E-06	-0.17088	-0.00010002	-0.18628	-0.00010904	585.3424011108863	84.622	0.45918	84.463	84.279	84.738	-0.15869	-0.078992	-0.00024619	NaN	28.081	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79452	+		43898	25928	30332	30383							0.09275123508814431
LLPKGEFKAS	10	Unmodified	_LLPKGEFKAS_					0	0	0			REV__nc|ENSG00000183336|Q9H3K6-2|BOLA2	REV__nc|ENSG00000183336|Q9H3K6-2|BOLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3163452148438	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.0508	1	10666	10666		39.253	5.0803	1	4888900	+		43899	26387	30333	30384	49344	49344					0.08222889028479585
LLPKGEFKAS	10	Unmodified	_LLPKGEFKAS_					0	0	0			REV__nc|ENSG00000183336|Q9H3K6-2|BOLA2	REV__nc|ENSG00000183336|Q9H3K6-2|BOLA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0508	1	10472	10472		39.253	2.8061	1	5204600	+		43900	26387	30333	30384	49345	49345					0.08222889028479585
LLPKNVHSL	9	Unmodified	_LLPKNVHSL_					0	0	0		nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.3057861328125	2	510.813659	1019.61277	0.077663	3.9671E-05	-0.035373	-1.8069E-05	0.04229	2.1602E-05	510.8135089717162	65.585	0.47934	65.585	65.358	65.837	0					18	12	2	0	0	0	0.024374	1	7812	7812		40.778	0	1	485510			43901	18359	30334	30385	49346	49346					0.10374326093892705
LLPKQLLL	8	Unmodified	_LLPKQLLL_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR	REV__nc|ENSG00000164808|Q14159-2|SPIDR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.7692565917969	2	469.325871	936.637189	-1.2506	-0.00058694	1.2986	0.00060947	0.048003	2.2529E-05	469.32631498783877	65.356	0.44972	65.153	64.94	65.39	-0.20254					17	10	2	0	0	0	0.027866	1	7441	7441		26.796	0	1	147480	+		43902	25804	30335	30386	49347	49347					0.16633586247417043
LLPKTAVVLRC	11	Unmodified	_LLPKTAVVLRC_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9228210449219	3	404.921409	1211.7424	0.50475	0.00020438	2.3567	0.0009543	2.8615	0.0011587	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.017	1	1313	1313		33.039	10.46	1	35253000			43903	8786	30336	30387	49348	49348					0.14499759381533295
LLPLAGLEEL	10	Unmodified	_LLPLAGLEEL_					0	0	0		ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	ENSG00000147324|ENST00000276282|MFHAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.3206176757812	2	534.320983	1066.62741	-0.80226	-0.00042866	0.60636	0.00032399	-0.1959	-0.00010467	534.3211505721415	96.377	0.8007	96.377	95.991	96.792	0					50	18	4	0	0	0	0.65054	1	12286	12286		71.296	12.514	1	1239800			43904	5956	30337	30388	49349	49349					0.09676353451391151
LLPLELLPLLL	11	Unmodified	_LLPLELLPLLL_					0	0	0			REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2399597167969	3	416.284342	1245.8312	-0.25755	-0.00010721	2.7183	0.0011316	2.4607	0.0010244	416.28537953632855	41.669	0.14772	41.546	41.456	41.603	-0.12299					6	3	2	0	0	0	0.024865	1	3688	3688		6.6596	0	1	87922	+		43905	36510	30338	30389	49350	49350					0.2181149789284973
LLPLFAYF	8	Unmodified	_LLPLFAYF_					0	0	0		ENST00000425923.1_1_5:131657926-131660304:+|nuORF;ENSG00000197208|ENST00000200652|SLC22A4	ENST00000425923.1_1_5:131657926-131660304:+|nuORF	ENST00000425923.1_1_5:131657926-131660304:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.285400390625	2	492.283672	982.552791	0.12845	6.3233E-05	3.2855	0.0016174	3.414	0.0016807	492.2852440981204	93.282	0.93618	93.282	92.751	93.687	0					63	21	4	0	0	0	1.0574	1	11861	11861		24.504	0.98132	1	2432500			43906	14075	30339	30390	49351	49351					0.06081635430643928
LLPLHLVAN	9	Unmodified	_LLPLHLVAN_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.3233337402344	2	495.310752	988.606951	-0.43694	-0.00021642	-4.4193	-0.0021889	-4.8562	-0.0024054	495.3087767811336	64.389	0.23057	64.133	63.999	64.23	-0.25563					7	5	2	0	0	0	0.024497	1	7283	7283		28.254	3.7351	1	66581	+		43907	23370	30340	30391	49352	49352					0.11219227582228086
LLPLHPQSP	9	Unmodified	_LLPLHPQSP_					0	0	0			REV__ENST00000445355.7_1_10:135075987-135076521:-|nuORF	REV__ENST00000445355.7_1_10:135075987-135076521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.77264404296875	2	501.292559	1000.57057	-1.5205	-0.00076221	0.9611	0.00048179	-0.55939	-0.00028042	501.292901590545	55.946	0.84398	55.73	55.234	56.078	-0.21551					47	22	3	0	0	0	0.024381	1	5983	5983		21.96	1.013	1	1352000	+		43908	32610	30341	30392	49353	49353					0.07030350685522535
LLPLKSSA	8	Unmodified	_LLPLKSSA_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7618103027344	2	414.763104	827.511654	-0.11281	-4.6791E-05	-2.8477	-0.0011811	-2.9605	-0.0012279	414.7618481739228	110.56	0.5822	110.43	110.11	110.69	-0.12524					39	18	3	0	0	0	1.0574	1	13575	13575		26.796	5.0938	1	182020	+		43909	31573	30342	30393	49354	49354					0.09099874391176854
LLPLLLLLL	9	Unmodified	_LLPLLLLLL_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;ENSG00000137142|ENST00000377694|IGFBPL1;ENSG00000132334|ENST00000254667|PTPRE;ENST00000490362.1_1_2:217498183-217525611:+|nuORF;ENSG00000164054|ENST00000296444|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000099617|ENST00000215368|EFNA2;ENSG00000166033|ENST00000368984|HTRA1;ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;CPAMD8|p.E956Sfs*20|1|0.35|ENSG00000160111|chr19:16945611-16945618|TCTCCTCA/-|frameshift_variant;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant;ENSG00000174498|ENST00000327987|IGDCC3;nc|ENSG00000254402|Q50LG9|LRRC24;ENSG00000161638|ENST00000293379|ITGA5;nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1;ENSG00000115457|ENST00000233809|IGFBP2;ENSG00000104805|ENST00000405315|NUCB1	ENSG00000149930|ENST00000308893|TAOK2;ENSG00000166033|ENST00000368984|HTRA1;ENSG00000160111|ENST00000443236|CPAMD8;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8;REV__nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000174498|ENST00000327987|IGDCC3;nc|ENSG00000254402|Q50LG9|LRRC24;REV__nc|ENSG00000149930|Q9UL54-3|TAOK2;REV__ENSG00000163704|ENST00000412055|PRRT3;ENSG00000161638|ENST00000293379|ITGA5;nc|ENSG00000105290|P51693|APLP1;ENSG00000115457|ENST00000233809|IGFBP2;REV__ENSG00000136928|ENST00000259455|GABBR2;REV__nc|ENSG00000165731|P07949-2|RET;REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	ENSG00000149930|ENST00000308893|TAOK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.8443603515625	2	510.875197	1019.73584	-0.35284	-0.00018025	-2.2916	-0.0011707	-2.6444	-0.001351	510.8739439918495	76.176	0.51128	75.904	75.737	76.248	-0.27266					15	12	2	0	0	0	0.024541	1	9061	9061		1.3276	0	1	108140			43910	6126;7543;6781;7497;23705;36661;7337;22590;25923;36776;25621;6884;3448;8475;18772;21517;2657;26801	30343	30394	49355	49355					0.22676189492460708
LLPLLLLPAG	10	Unmodified	_LLPLLLLPAG_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3;EPHB3|p.R363Gfs*43|1|0.26|ENSG00000182580|chr3:184576913-184576913|C/-|frameshift_variant	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2644958496094	2	510.346803	1018.67905	-0.87946	-0.00044883	2.4219	0.001236	1.5424	0.00078717	510.347714194541	81.314	0.28537	81.338	81.166	81.452	0.023903					11	6	2	0	0	0	0.03519	1	10037	10037		7.6903	0	1	83595			43911	9146	30344	30395	49356	49356					0.17046141935929882
LLPLLLVSL	9	Unmodified	_LLPLLLVSL_					0	0	0			REV__nc|ENSG00000112655|Q13308-2|PTK7	REV__nc|ENSG00000112655|Q13308-2|PTK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.8416442871094	2	490.841354	979.668155	0.67839	0.00033298	-0.8542	-0.00041928	-0.17581	-8.6296E-05	490.84071598485474	105.93	0.47302	105.93	105.65	106.12	0					36	18	3	0	0	0	0.75282	1	13594	13594		42.474	7.2737	1	135530	+		43912	36574	30345	30396	49357	49357					0.17750739561643059
LLPLLLVSL	9	Unmodified	_LLPLLLVSL_					0	0	0			REV__nc|ENSG00000112655|Q13308-2|PTK7	REV__nc|ENSG00000112655|Q13308-2|PTK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.8406066894531	2	490.841354	979.668155	-0.12549	-6.1596E-05	-0.3876	-0.00019025	-0.51309	-0.00025185	490.84112874761354	105.96	0.42726	105.96	105.75	106.18	0.00014496					24	15	2	0	0	0	0.44472	1	13533	13533		62.978	12.954	1	221550	+		43913	36574	30345	30396	49358	49358					0.17750739561643059
LLPLNSALL	9	Unmodified	_LLPLNSALL_					0	0	0		RC3H1|p.V66L|1|0.47|ENSG00000135870|chr1:173992790-173992790|C/A|missense_variant	RC3H1|p.V66L|1|0.47|ENSG00000135870|chr1:173992790-173992790|C/A|missense_variant	RC3H1|p.V66L|1|0.47|ENSG00000135870|chr1:173992790-173992790|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7901916503906	2	477.305136	952.595718	0.72007	0.00034369	-3.9993	-0.0019089	-3.2793	-0.0015652	477.30150692277317	53.528	0.20989	53.528	53.372	53.582	0					7	5	2	0	0	0	0.024447	1	5789	5789		40.778	0	1	47822			43914	19039	30346	30397	49359	49359					0.11752405488095974
LLPLPASH	8	Unmodified	_LLPLPASH_					0	0	0		ENST00000550533.1_1_12:51467850-51470340:-|nuORF	ENST00000550533.1_1_12:51467850-51470340:-|nuORF	ENST00000550533.1_1_12:51467850-51470340:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.2388916015625	2	424.255446	846.496338	-0.0040262	-1.7082E-06	0.80078	0.00033974	0.79675	0.00033803	424.2555913326096	21.862	0.4814	21.672	21.372	21.853	-0.19072					13	9	2	0	0	0	0.027866	1	733	733		8.2313	2.3102	1	32574			43915	16585	30347	30398	49360	49360					0.06695007593987157
LLPLPGLYPL	10	Unmodified	_LLPLPGLYPL_					0	0	0		ENST00000417036.1_1_3:9404932-9405082:+|nuORF;ENST00000345094.7_1_3:9404932-9406789:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2889404296875	2	548.344261	1094.67397	-1.2383	-0.00067902	2.0643	0.001132	0.82602	0.00045294	548.3449929792979	93.796	0.69678	93.656	93.223	93.919	-0.13995					30	15	3	0	0	0	0.03519	1	11500	11500		19.36	0	1	184350			43916	12560	30348	30399	49361	49361					0.1304183807330901
LLPLPGLYPL	10	Unmodified	_LLPLPGLYPL_					0	0	0		ENST00000417036.1_1_3:9404932-9405082:+|nuORF;ENST00000345094.7_1_3:9404932-9406789:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.344261	1094.67397	-0.31803	-0.00017439	1.7729	0.00097214	1.4548	0.00079775	548.3449222973276	93.695	0.62863	93.695	93.219	93.848	0	0.016069	-0.00041334	NaN	12.959	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204560			43917	12560	30348	30399							0.1304183807330901
LLPLPGLYPL	10	Unmodified	_LLPLPGLYPL_					0	0	0		ENST00000417036.1_1_3:9404932-9405082:+|nuORF;ENST00000345094.7_1_3:9404932-9406789:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.344261	1094.67397	-0.96684	-0.00053016	2.8247	0.0015489	1.8578	0.0010187	548.3455818099787	93.691	0.53782	93.687	93.368	93.906	-0.0042038	0.0082483	0.00074018	NaN	12.959	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243690			43918	12560	30348	30399							0.1304183807330901
LLPLPGLYPL	10	Unmodified	_LLPLPGLYPL_					0	0	0		ENST00000417036.1_1_3:9404932-9405082:+|nuORF;ENST00000345094.7_1_3:9404932-9406789:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.344261	1094.67397	-1.0663	-0.00058471	2.7358	0.0015002	1.6695	0.00091546	548.3455726068297	93.65	0.53753	93.656	93.433	93.971	0.0059814	-0.023397	0.00064273	NaN	12.959	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149790			43919	12560	30348	30399							0.1304183807330901
LLPLPGLYPL	10	Unmodified	_LLPLPGLYPL_					0	0	0		ENST00000417036.1_1_3:9404932-9405082:+|nuORF;ENST00000345094.7_1_3:9404932-9406789:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.344261	1094.67397	0.12394	6.7962E-05	-0.049138	-2.6945E-05	0.074802	4.1017E-05	548.3436856845311	93.77	0.56381	93.648	93.322	93.886	-0.12215	-0.030913	-0.0024115	NaN	12.959	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151950			43920	12560	30348	30399							0.1304183807330901
LLPLPGLYPL	10	Unmodified	_LLPLPGLYPL_					0	0	0		ENST00000417036.1_1_3:9404932-9405082:+|nuORF;ENST00000345094.7_1_3:9404932-9406789:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	ENST00000417036.1_1_3:9404932-9405082:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.344261	1094.67397	-0.31495	-0.0001727	1.4795	0.0008113	1.1646	0.0006386	548.3445184211624	93.88	0.47718	93.732	93.392	93.869	-0.14771	0.053232	-0.00073502	NaN	12.959	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133830			43921	12560	30348	30399							0.1304183807330901
LLPLRVGG	8	Unmodified	_LLPLRVGG_					0	0	0		ENST00000374694.2_1_10:35928201-35929404:-|nuORF	ENST00000374694.2_1_10:35928201-35929404:-|nuORF	ENST00000374694.2_1_10:35928201-35929404:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.7463684082031	2	412.771263	823.527973	0.5448	0.00022488	3.8599	0.0015933	4.4047	0.0018181	412.7728493683634	84.559	0.20713	84.356	84.294	84.502	-0.20329					6	4	2	0	0	0	0.027866	1	10219	10219		23.037	0	1	41187			43922	13129	30349	30400	49362	49362					0.10915000347949899
LLPLSHGRAR	10	Unmodified	_LLPLSHGRAR_					0	0	0			REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3402099609375	2	560.340907	1118.66726	0.39378	0.00022065	-1.7563	-0.00098414	-1.3625	-0.00076349	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	1.089	1	12605	12605		34.173	2.2177	1	14365000	+		43923	33624	30350	30401	49363	49363					0.11267337965296065
LLPMFPILP	9	Unmodified	_LLPMFPILP_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2919921875	2	520.814282	1039.61401	-0.8188	-0.00042644	-3.0047	-0.0015649	-3.8235	-0.0019913	520.8126689250445	72.857	0.52587	72.857	72.656	73.182	0					21	12	2	0	0	0	0.024389	1	8890	8890		21.702	0	1	220670	+		43924	20907	30351	30402	49364	49364					0.09578824138452546
LLPMGTALPL	10	Unmodified	_LLPMGTALPL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3082885742188	2	513.306821	1024.59909	0.33058	0.00016969	2.8	0.0014372	3.1306	0.0016069	513.3082328360034	54.345	1.107	54.443	54.15	55.257	0.098015					75	31	3	0	0	0	0.52589	1	5882	5882		85.359	10.316	1	9063000			43925	10947	30352	30403	49365	49365					0.0877733227043791
LLPMVIFSD	9	Unmodified	_LLPMVIFSD_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF;ENST00000521877.1_1_16:88782015-88782615:-|nuORF	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7996826171875	2	517.783179	1033.5518	-0.00015901	-8.2332E-08	4.362	0.0022586	4.3619	0.0022585	517.7855763001377	104.75	0.16973	104.62	104.54	104.71	-0.12561					6	4	2	0	0	0	0.024535	1	13032	13032		18.324	0	1	18951			43926	2494	30353	30404	49366	49366					0.036370529994655953
LLPNILLTG	9	Unmodified	_LLPNILLTG_					0	0	0		ENSG00000085231|ENST00000380822|AK6;ENST00000217893.9_1_5:68661579-68665353:-|nuORF;ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENSG00000085231|ENST00000380822|AK6;ENST00000540219.1_1_12:34402420-34402531:+|nuORF	ENSG00000085231|ENST00000380822|AK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.30377197265625	2	477.305136	952.595718	0.39644	0.00018922	-3.3999	-0.0016228	-3.0035	-0.0014336	477.3034128087534	18.903	0.88469	18.773	18.55	19.435	-0.13031					41	17	4	0	0	0	0.67687	1	344	344		47.657	5.2612	1	610590			43927	1783;16416	30354	30405	49367	49367					0.11752405488084605
LLPNIVSSL	9	Unmodified	_LLPNIVSSL_					0	0	0			REV__ENSG00000183840|ENST00000329321|GPR39	REV__ENSG00000183840|ENST00000329321|GPR39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.277099609375	2	478.294768	954.574983	0.28455	0.0001361	2.5109	0.001201	2.7955	0.0013371	478.2963985111301	86.501	0.56342	86.456	85.947	86.51	-0.045105					15	12	2	0	0	0	0.024292	1	10805	10805		40.778	0	1	46684	+		43928	27615	30355	30406	49368	49368					0.09587815108409359
LLPNVKVN	8	Unmodified	_LLPNVKVN_					0	0	0			REV__ENST00000560298.1_1_15:57024815-57024902:-|nuORF	REV__ENST00000560298.1_1_15:57024815-57024902:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.78375244140625	2	448.781828	895.549102	0.072954	3.274E-05	4.3217	0.0019395	4.3946	0.0019722	448.78372873485154	100.94	0.64117	100.95	100.7	101.34	0.0090332					30	14	3	0	0	0	0.88442	1	12886	12886		52.299	2.8576	1	344100	+		43929	35142	30356	30407	49369	49369					0.09714965656803543
LLPPALATID	10	Unmodified	_LLPPALATID_					0	0	0			REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2537841796875	2	512.307875	1022.6012	0.40749	0.00020876	3.5477	0.0018175	3.9552	0.0020263	512.3099646660792	54.326	0.30616	54.129	54.06	54.366	-0.19739					10	7	2	0	0	0	0.03519	1	5781	5781		63.306	0	1	94157	+		43930	29765	30357	30408	49370	49370					0.09080084279889888
LLPPEWQV	8	Unmodified	_LLPPEWQV_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79266357421875	2	491.273835	980.533118	0.049017	2.4081E-05	-3.5838	-0.0017606	-3.5348	-0.0017366	491.27195852557804	61.077	0.56736	61.077	60.807	61.374	0					22	14	3	0	0	0	0.027866	1	7031	7031		47.916	13.743	1	617880	+		43931	36494	30358	30409	49371	49371					0.04207259419899856
LLPPGPLPSAG	11	Unmodified	_LLPPGPLPSAG_					0	0	0		ENST00000513567.5_1_4:46995745-46995916:+|nuORF	ENST00000513567.5_1_4:46995745-46995916:+|nuORF	ENST00000513567.5_1_4:46995745-46995916:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7638244628906	2	509.800217	1017.58588	-0.075671	-3.8577E-05	0.4161	0.00021213	0.34043	0.00017355	509.79872907259283	49.354	0.11385	49.172	49.076	49.19	-0.18206					4	2	2	0	0	0	0.024729	1	4935	4935		29.15	0	1	83231			43932	15869	30359	30410	49372	49372					0.07779217482709555
LLPPKPSSQG	10	Unmodified	_LLPPKPSSQG_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.25341796875	2	512.295299	1022.57605	0.70502	0.00036118	1.5175	0.00077739	2.2225	0.0011386	512.2960642594809	54.584	0.23053	54.378	54.237	54.468	-0.20613					8	5	2	0	0	0	0.03519	1	5793	5793		51.193	1.7511	1	91954			43933	4054	30360	30411	49373	49373					0.06566029477335178
LLPPLLLGR	9	Unmodified	_LLPPLLLGR_					0	0	0			REV__ENSG00000162512|ENST00000339394|SDC3	REV__ENSG00000162512|ENST00000339394|SDC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7743835449219	2	496.33677	990.658987	-0.023135	-1.1483E-05	-0.077363	-3.8398E-05	-0.1005	-4.9881E-05	496.33663067412	77.358	0.71544	77.371	77.145	77.86	0.013504					27	16	2	0	0	0	0.024386	1	9515	9515		25.45	0	1	265010	+		43934	25450	30361	30412	49374	49374					0.16328390996000053
LLPPLLSL	8	Unmodified	_LLPPLLSL_					0	0	0			REV__ENST00000318978.5_1_19:7989756-7989993:-|nuORF	REV__ENST00000318978.5_1_19:7989756-7989993:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.54852294921875	2	433.291497	864.568441	-0.30833	-0.0001336	-2.7619	-0.0011967	-3.0702	-0.0013303	433.29032044059863	24.422	1.2304	24.422	23.822	25.052	0					46	27	3	0	0	0	0.027866	1	1094	1094		3.9852	0	1	219770	+		43935	30317	30362	30413	49375	49375					0.13073921947716372
LLPPNSGSAAP	11	Unmodified	_LLPPNSGSAAP_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2538452148438	2	512.277106	1022.53966	-0.23353	-0.00011963	0.40271	0.0002063	0.16918	8.6666E-05	512.2765614294286	53.902	0.41171	54	53.739	54.15	0.098015					16	11	2	0	0	0	0.024797	1	5772	5772		63.534	32.004	1	114630			43936	11053	30363	30414	49376	49376					0.029291525806115715
LLPPPCLDPS	10	Carbamidomethyl (C)	_LLPPPC(Carbamidomethyl (C))LDPS_	LLPPPC(1)LDPS		LLPPPC(74)LDPS		0	1	0			REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF	REV__ENST00000502574.1_1_15:65134152-65214443:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.7871704101562	2	554.788992	1107.56343	-0.26605	-0.0001476	-2.9356	-0.0016286	-3.2016	-0.0017762	554.7872547805438	82.226	1.3997	82.252	81.899	83.299	0.025711					124	32	6	0	0	0	0.62679	1	10232	10232		73.975	11.867	1	9537400	+		43937	33933	30364	30415	49377	49377	446				0.01395250022756045
LLPPPPLLA	9	Unmodified	_LLPPPPLLA_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.8041687011719	2	465.804771	929.59499	-0.12873	-5.9964E-05	0.36073	0.00016803	0.232	0.00010807	465.8048113886321	84.333	1.7568	84.333	83.91	85.667	0					115	41	4	0	0	0	0.084323	7	10536	10536;10547;10557;10569;10583;10595;10608		116.12	44.744	1	3359900			43938	6011	30365	30416	49378;49379;49380;49381;49382;49383;49384	49378					0.1273761083904219
LLPPPPLLA	9	Unmodified	_LLPPPPLLA_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.80474853515625	2	465.804771	929.59499	-0.58301	-0.00027157	0.77508	0.00036104	0.19207	8.9469E-05	465.80500292390263	84.385	1.7109	84.312	83.917	85.628	-0.072769					111	40	4	0	0	0	0.016798	6	10541	10507;10517;10529;10541;10554;10579		152.83	52.474	1	3225700			43939	6011	30365	30416	49385;49386;49387;49388;49389;49390	49388					0.1273761083904219
LLPPPPLLA	9	Unmodified	_LLPPPPLLA_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.8048400878906	2	465.804771	929.59499	0.26032	0.00012126	-0.027118	-1.2632E-05	0.23321	0.00010863	465.80460999531607	84.318	2.131	84.344	83.901	86.032	0.02655					126	50	4	0	0	0	0.0402	6	10493	10458;10471;10483;10493;10505;10520		133.45	60.83	1	3021700			43940	6011	30365	30416	49391;49392;49393;49394;49395;49396	49394					0.1273761083904219
LLPPPPPPPP	10	Unmodified	_LLPPPPPPPP_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1;PRIMA1|p.P59L|1|0.31|ENSG00000175785|chr14:93779229-93779229|G/A|missense_variant;ENST00000584214.1_1_17:16253243-16256750:-|nuORF;ENST00000403681.6_2_12:66218024-66218900:+|nuORF;ENST00000559694.5_1_14:24530705-24534560:+|nuORF;ENSG00000204335|ENST00000375281|SP5;nc|ENSG00000186648|Q8ND23-2|CARMIL3;ENST00000560349.1_1_14:24532322-24538610:+|nuORF;ENSG00000176165|ENST00000313071|FOXG1;ENSG00000166582|ENST00000299736|CENPV;nc|ENSG00000166582|Q7Z7K6|CENPV;ENSG00000186648|ENST00000342740|CARMIL3;ENSG00000183153|ENST00000578689|GJD3	ENSG00000162458|ENST00000375766|FBLIM1;REV__ENSG00000203485|ENST00000392634|INF2;REV__nc|ENSG00000110076|P58401|NRXN2;REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant;ENSG00000166582|ENST00000299736|CENPV;ENSG00000186648|ENST00000342740|CARMIL3;ENSG00000183153|ENST00000578689|GJD3	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.3027954101562	2	511.307678	1020.6008	-0.77314	-0.00039531	-3.5047	-0.001792	-4.2778	-0.0021873	511.3057745693309	66.183	0.70798	65.969	65.67	66.378	-0.21327					35	17	3	0	0	0	0.03519	1	7616	7616		26.796	0	1	1433900			43941	28535;36563;6946;27644;7586;9568;9203	30366	30417	49397	49397					0.09132709350694768
LLPPPPPPPP	10	Unmodified	_LLPPPPPPPP_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1;PRIMA1|p.P59L|1|0.31|ENSG00000175785|chr14:93779229-93779229|G/A|missense_variant;ENST00000584214.1_1_17:16253243-16256750:-|nuORF;ENST00000403681.6_2_12:66218024-66218900:+|nuORF;ENST00000559694.5_1_14:24530705-24534560:+|nuORF;ENSG00000204335|ENST00000375281|SP5;nc|ENSG00000186648|Q8ND23-2|CARMIL3;ENST00000560349.1_1_14:24532322-24538610:+|nuORF;ENSG00000176165|ENST00000313071|FOXG1;ENSG00000166582|ENST00000299736|CENPV;nc|ENSG00000166582|Q7Z7K6|CENPV;ENSG00000186648|ENST00000342740|CARMIL3;ENSG00000183153|ENST00000578689|GJD3	ENSG00000162458|ENST00000375766|FBLIM1;REV__ENSG00000203485|ENST00000392634|INF2;REV__nc|ENSG00000110076|P58401|NRXN2;REV__TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant;ENSG00000166582|ENST00000299736|CENPV;ENSG00000186648|ENST00000342740|CARMIL3;ENSG00000183153|ENST00000578689|GJD3	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.307678	1020.6008	-0.21525	-0.00011006	-4.1202	-0.0021067	-4.3354	-0.0022167	511.3054736263531	66.21	0.59441	65.969	65.706	66.301	-0.24145	0.0012424	0.00013244	NaN	26.796	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1573800			43942	28535;36563;6946;27644;7586;9568;9203	30366	30417							0.09132709350694768
LLPPPRMSL	9	Unmodified	_LLPPPRMSL_					0	0	0		ENST00000325147.13_1_11:203487-204003:-|nuORF;ENST00000433234.2_11:203487-204043:-|nuORF	ENST00000325147.13_1_11:203487-204003:-|nuORF	ENST00000325147.13_1_11:203487-204003:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2537841796875	2	512.304613	1022.59467	0.014033	7.1891E-06	-0.85399	-0.0004375	-0.83996	-0.00043031	512.804306376268	53.965	0.21473	54.063	53.973	54.188	0.098015					8	5	2	0	0	0	0.022083	1	5819	5819		111.65	10.437	1	93931			43943	12267	30367	30418	49398	49398					0.08427867847535708
LLPPQAPAL	9	Unmodified	_LLPPQAPAL_					0	0	0		ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.28375244140625	2	460.284203	918.553853	-0.26793	-0.00012332	0.3744	0.00017233	0.10647	4.9007E-05	460.2841563202568	65.176	1.4508	65.176	64.654	66.105	0					105	39	3	0	0	0	0.40179	2	7719	7707;7719		65.803	0	1	2579000			43944	14368	30368	30419	49399;49400	49400					0.09131849799553038
LLPPQAPAL	9	Unmodified	_LLPPQAPAL_					0	0	0		ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.28399658203125	2	460.284203	918.553853	-0.40672	-0.00018721	0.51553	0.00023729	0.10881	5.0083E-05	460.284237108121	65.565	1.5459	65.292	64.675	66.221	-0.27282					123	41	4	0	0	0	0.40179	1	7713	7713		65.803	0	1	2595000			43945	14368	30368	30419	49401	49401					0.09131849799553038
LLPPQAPAL	9	Unmodified	_LLPPQAPAL_					0	0	0		ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.28350830078125	2	460.284203	918.553853	-0.24492	-0.00011273	0.070334	3.2373E-05	-0.17458	-8.0358E-05	460.28402413468183	65.543	1.8162	65.301	64.522	66.338	-0.24145					132	44	4	0	0	0	0.43973	5	7466	7466;7478;7513;7526;7545		63.306	1.9636	1	2946100			43946	14368	30368	30419	49402;49403;49404;49405;49406	49402					0.09131849799553038
LLPPQAPAL	9	Unmodified	_LLPPQAPAL_					0	0	0		ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.28399658203125	2	460.284203	918.553853	-1.1723	-0.0005396	0.85279	0.00039253	-0.31952	-0.00014707	460.284367401358	65.538	1.8501	65.325	64.528	66.378	-0.21328					119	45	4	0	0	0	0.40179	3	7498	7498;7511;7536		65.803	0	1	2954800			43947	14368	30368	30419	49407;49408;49409	49407					0.09131849799553038
LLPPQAPAL	9	Unmodified	_LLPPQAPAL_					0	0	0		ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	ENST00000441896.1_1_7:57059615-57063740:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	460.284203	918.553853	0.23853	0.00010979	-0.18491	-8.5112E-05	0.053616	2.4679E-05	460.28393771769186	65.263	1.4973	65.3	64.707	66.205	0.037384	0.017168	-0.00040915	NaN	65.803	107	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2811200			43948	14368	30368	30419							0.09131849799553038
LLPPQPALA	9	Unmodified	_LLPPQPALA_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.28387451171875	2	460.284203	918.553853	-0.24492	-0.00011273	0.070334	3.2373E-05	-0.17458	-8.0358E-05	460.28402413468183	65.543	1.8162	65.301	64.522	66.338	-0.24145					132	44	4	0	0	0	0.40179	2	7490	7490;7502		65.803	7.9919	1	2946100			43949	6757	30369	30420	49410;49411	49410					0.09131849799541669
LLPPQPALA	9	Unmodified	_LLPPQPALA_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2838439941406	2	460.284203	918.553853	-0.38254	-0.00017608	-0.052951	-2.4373E-05	-0.43549	-0.00020045	460.2839007881893	65.556	1.7258	65.305	64.508	66.234	-0.25112					118	42	5	0	0	0	0.40179	3	7497	7485;7497;7511		65.803	0	1	2475400			43950	6757	30369	30420	49412;49413;49414	49413					0.09131849799541669
LLPPRLAAR	9	Unmodified	_LLPPRLAAR_					0	0	0			REV__ENST00000337288.9_2_2:96861281-96874146:-|nuORF	REV__ENST00000337288.9_2_2:96861281-96874146:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.77142333984375	2	503.829643	1005.64473	-0.31928	-0.00016086	-0.30758	-0.00015497	-0.62687	-0.00031583	503.8292680827483	48.487	0.49171	48.554	48.378	48.87	0.066795					22	13	2	0	0	0	0.024535	1	4936	4936		12.207	0	1	122130	+		43951	30560	30370	30421	49415	49415					0.14213738567684686
LLPQGLPGL	9	Unmodified	_LLPQGLPGL_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.2830810546875	2	454.284203	906.553853	-0.71205	-0.00032347	0.96954	0.00044044	0.25748	0.00011697	454.2845376717809	83.965	1.2304	83.891	83.485	84.715	-0.074249					66	28	4	0	0	0	0.52323	1	10479	10479		57.811	2.3071	1	1264000			43952	10321	30371	30422	49416	49416					0.0968384979955772
LLPQIITRF	9	Unmodified	_LLPQIITRF_					0	0	0			REV__ENST00000542302.6_1_12:1519571-1599393:+|nuORF	REV__ENST00000542302.6_1_12:1519571-1599393:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8447265625	2	550.844959	1099.67537	0.1921	0.00010582	-0.21062	-0.00011602	-0.018518	-1.02E-05	550.8447078299653	82.703	0.64977	82.522	82.201	82.85	-0.18079					38	14	4	0	0	0	0.84115	1	9979	9979		36.447	3.6343	1	562220	+		43953	34790	30372	30423	49417	49417					0.1295147216208079
LLPQPTNGLPI	11	Unmodified	_LLPQPTNGLPI_					0	0	0		ENST00000473202.1_1_2:224844995-224845190:-|nuORF	ENST00000473202.1_1_2:224844995-224845190:-|nuORF	ENST00000473202.1_1_2:224844995-224845190:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.8447875976562	2	581.845156	1161.67576	-0.43303	-0.00025196	-0.1694	-9.8563E-05	-0.60243	-0.00035052	581.844949758247	68.814	1.0574	68.572	68.227	69.284	-0.24277					66	25	4	0	0	0	0.25893	1	7954	7954		93.143	13.431	1	3181700			43954	15004	30373	30424	49418	49418					0.10138847091275238
LLPQPVLA	8	Unmodified	_LLPQPVLA_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.77484130859375	2	425.773471	849.53239	-0.086541	-3.6847E-05	3.0095	0.0012814	2.923	0.0012445	425.7747981740325	42.002	1.1717	42.002	41.579	42.75	0					125	33	6	0	0	0	1.0574	1	3847	3847		15.636	0.97212	1	65572000			43955	1794	30374	30425	49419	49419					0.10160464770842736
LLPQPVLA	8	Unmodified	_LLPQPVLA_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.7750549316406	2	425.773471	849.53239	0.67355	0.00028678	2.7876	0.0011869	3.4611	0.0014737	425.7745799755931	43.106	2.4421	43.136	42.759	45.201	0.030823					140	68	5	0	0	0	1.0574	1	3989	3989		23.037	1.3344	1	17718000			43956	1794	30374	30425	49420	49420					0.10160464770842736
LLPQPVLA	8	Unmodified	_LLPQPVLA_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.7755432128906	2	425.773471	849.53239	0.13242	5.6379E-05	3.3056	0.0014074	3.438	0.0014638	425.7747769997875	43.162	2.0429	43.05	42.693	44.736	-0.11253					127	54	5	0	0	0	1.0574	1	3919	3919		23.037	1.3344	1	9807800			43957	1794	30374	30425	49421	49421					0.10160464770842736
LLPQPVLA	8	Unmodified	_LLPQPVLA_					0	0	0		ENST00000496645.5_1_1:159897137-159899822:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000496645.5_1_1:159897137-159899822:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.775146484375	2	425.773471	849.53239	-0.21096	-8.9821E-05	3.6783	0.0015661	3.4673	0.0014763	425.77492564602755	43.279	1.886	43.042	42.719	44.605	-0.23737					116	50	5	0	0	0	1.0574	1	3965	3965		23.037	1.3344	1	10379000			43958	1794	30374	30425	49422	49422					0.10160464770842736
LLPRDARAP	9	Unmodified	_LLPRDARAP_					0	0	0		ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2695617675781	2	504.801083	1007.58761	0.22993	0.00011607	-0.37596	-0.00018979	-0.14603	-7.3717E-05	504.8008019384105	18.738	0.396	18.535	18.312	18.708	-0.20371					12	6	2	0	0	0	0.024539	1	347	347		27.882	10.517	1	57712			43959	10998	30375	30426	49423	49423					0.0841227129130857
LLPRHVCW	8	Unmodified	_LLPRHVCW_					0	0	0			REV__ENST00000605571.1_1_4:1715074-1715257:+|nuORF	REV__ENST00000605571.1_1_4:1715074-1715257:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2535400390625	2	512.281472	1022.54839	-0.74985	-0.00038413	3.9027	0.0019993	3.1529	0.0016151	512.2829968259085	54.244	0.42307	54.108	53.867	54.291	-0.13617					14	12	2	0	0	0	0.027866	1	5713	5713		44.531	8.9128	1	298570	+		43960	35918	30376	30427	49424	49424					0.03801847736099262
LLPRKPSF	8	Unmodified	_LLPRKPSF_					0	0	0		nc|ENSG00000175513|Q3SY00-2|TSGA10IP;ENSG00000175513|ENST00000532620|TSGA10IP	nc|ENSG00000175513|Q3SY00-2|TSGA10IP	nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2983093261719	2	479.297645	956.580737	1.0001	0.00047936	-0.5987	-0.00028695	0.40143	0.00019241	479.2971482998715	70.303	1.5577	70.01	69.551	71.109	-0.29291					69	42	3	0	0	0	0.91239	1	8470	8470		50.025	5.4935	1	5900200			43961	8565	30377	30428	49425	49425					0.10070958410756248
LLPRKPSF	8	Unmodified	_LLPRKPSF_					0	0	0		nc|ENSG00000175513|Q3SY00-2|TSGA10IP;ENSG00000175513|ENST00000532620|TSGA10IP	nc|ENSG00000175513|Q3SY00-2|TSGA10IP	nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.297607421875	2	479.297645	956.580737	-0.20541	-9.8454E-05	0.54261	0.00026007	0.3372	0.00016162	479.29772652342143	70.058	1.3879	70.07	69.627	71.015	0.012413					72	35	3	0	0	0	0.91239	1	8383	8383		50.025	5.4935	1	4766400			43962	8565	30377	30428	49426	49426					0.10070958410756248
LLPRLGGPL	9	Unmodified	_LLPRLGGPL_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.30535888671875	2	468.30547	934.596387	-0.14446	-6.7653E-05	-0.86869	-0.00040681	-1.0132	-0.00047447	468.3050202581613	61.906	1.6994	61.968	61.542	63.242	0.062767					95	44	5	0	0	0	0.59099	2	7088	7088;7135		53.351	3.3269	1	43419000	+		43963	31601	30378	30429	49427;49428	49427					0.12647244927802603
LLPRLVNV	8	Unmodified	_LLPRLVNV_					0	0	0		ENST00000394321.9_1_19:7591427-7598678:+|nuORF	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2870178222656	2	462.30547	922.596387	-0.3357	-0.0001552	-4.3239	-0.0019989	-4.6596	-0.0021541	462.30423678968117	52.713	0.34343	52.713	52.595	52.938	0					16	8	3	0	0	0	0.027866	1	5671	5671		20.482	0	1	129800			43964	13485	30379	30430	49429	49429					0.13199244927795917
LLPRTVYDL	9	Unmodified	_LLPRTVYDL_					0	0	0		ENST00000567143.1_1_16:58436992-58437325:+|nuORF	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	ENST00000567143.1_1_16:58436992-58437325:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.31640625	2	545.318774	1088.623	0.20032	0.00010924	-4.0607	-0.0022144	-3.8604	-0.0021051	545.3163945789998	101.48	0.89848	101.35	101	101.89	-0.13156					45	20	4	0	0	0	0.83071	1	12597	12597		37.159	5.2042	1	1038300			43965	16956	30380	30431	49430	49430					0.08222889028479585
LLPRVPKLV	9	Unmodified	_LLPRVPKLV_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7996215820312	2	517.85787	1033.70119	-0.41254	-0.00021364	-3.8172	-0.0019768	-4.2297	-0.0021904	517.856222522482	104.63	0.32387	104.5	104.23	104.56	-0.12927					14	7	2	0	0	0	0.024541	1	12999	12999		25.45	12.491	1	43479	+		43966	36675	30381	30432	49431	49431					0.1856836640433812
LLPSGHTK	8	Unmodified	_LLPSGHTK_					0	0	0		ENST00000373209.2_1_10:72360428-72360569:-|nuORF	ENST00000373209.2_1_10:72360428-72360569:-|nuORF	ENST00000373209.2_1_10:72360428-72360569:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7746276855469	2	426.750527	851.486502	0.22626	9.6556E-05	3.3419	0.0014261	3.5681	0.0015227	426.7521582105535	42.328	0.3019	42.205	42.116	42.417	-0.12299					13	7	2	0	0	0	0.027866	1	3796	3796		24.203	0	1	77048			43967	13070	30382	30433	49432	49432					0.05481819588601411
LLPSGHTK	8	Unmodified	_LLPSGHTK_					0	0	0		ENST00000373209.2_1_10:72360428-72360569:-|nuORF	ENST00000373209.2_1_10:72360428-72360569:-|nuORF	ENST00000373209.2_1_10:72360428-72360569:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.7749938964844	2	426.750527	851.486502	-0.12178	-5.1968E-05	4.245	0.0018116	4.1232	0.0017596	426.75247851663215	42.558	0.41306	42.326	42.117	42.53	-0.23186					14	10	2	0	0	0	0.027866	1	3807	3807		30.504	13.139	1	67679			43968	13070	30382	30433	49433	49433					0.05481819588601411
LLPSHLPLHKP	11	Unmodified	_LLPSHLPLHKP_					0	0	0			REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.92230224609375	3	417.923919	1250.74993	0.28462	0.00011895	-4.2423	-0.0017729	-3.9576	-0.001654	417.9220987365481	104.41	1.0474	104.4	104.07	105.12	-0.0032196					79	30	4	0	0	0	1.0718	1	13312	13312		12.433	0	1	2347400	+		43969	30686	30383	30434	49434	49434					0.1345823497345009
LLPSKQMP	8	Unmodified	_LLPSKQMP_					0	0	0		nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2637939453125	2	457.262413	912.510274	0.3516	0.00016077	3.8598	0.0017649	4.2114	0.0019257	457.2640675136426	78.861	1.8585	78.607	77.998	79.857	-0.25471					112	43	5	0	0	0	1.043	1	9406	9406		30.504	3.7075	1	1133100			43970	6225	30384	30435	49435	49435					0.05051917030777986
LLPSNDPVVME	11	Unmodified	_LLPSNDPVVME_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9229431152344	3	405.209285	1212.60602	-0.23846	-9.6626E-05	0.10584	4.2889E-05	-0.13262	-5.3738E-05	405.2096429837717	26.462	0.43015	26.226	25.948	26.378	-0.23603					17	12	2	0	0	0	0.024746	1	1361	1361		29.245	3.6709	1	170590			43971	10202	30385	30436	49436	49436					0.008226003603567733
LLPSPEFDY	9	Unmodified	_LLPSPEFDY_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7638549804688	2	540.76604	1079.51753	-0.47149	-0.00025496	-2.4933	-0.0013483	-2.9648	-0.0016033	540.7645879283925	49.966	1.8384	49.785	49.383	51.222	-0.18071					122	48	4	0	0	0	0.40179	1	5049	5049		65.803	7.9919	1	11458000			43972	9241	30386	30437	49437	49437					-0.019050718877906547
LLPSSIKRSD	10	Unmodified	_LLPSSIKRSD_					0	0	0			REV__ENST00000424300.5_1_3:49083955-49084507:-|nuORF	REV__ENST00000424300.5_1_3:49083955-49084507:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.3240966796875	2	558.324588	1114.63462	1.0696	0.00059718	-0.94284	-0.00052641	0.12675	7.0768E-05	558.3240449933329	98.769	1.2313	98.645	98.241	99.472	-0.12414					51	30	3	0	0	0	1.1286	1	12260	12260		25.574	2.5316	1	217700	+		43973	32231	30387	30438	49438	49438					0.081890860518115
LLPTATTNG	9	Unmodified	_LLPTATTNG_					0	0	0		ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	444.2456970214844	2	444.245275	886.475997	-0.38856	-0.00017261	0.092758	4.1207E-05	-0.2958	-0.00013141	444.24570454476	102.79	1.6394	102.79	102.21	103.85	0					89	39	5	0	0	0	0.92825	1	13196	13196		30.504	1.3541	1	7543800			43974	6842	30388	30439	49439	49439					0.028217921435157223
LLPTATTNG	9	Unmodified	_LLPTATTNG_					0	0	0		ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.2454833984375	2	444.245275	886.475997	0.15763	7.0029E-05	0.53755	0.0002388	0.69518	0.00030883	444.24545220635093	102.77	1.0672	102.77	102.5	103.57	0.0054169					45	25	2	0	0	0	0.85329	1	13121	13121		35.618	2.8059	1	7580800			43975	6842	30388	30439	49440	49440					0.028217921435157223
LLPTQGLAP	9	Unmodified	_LLPTQGLAP_					0	0	0		ENST00000374232.7_1_9:115626678-115631377:+|nuORF	ENST00000374232.7_1_9:115626678-115631377:+|nuORF	ENST00000374232.7_1_9:115626678-115631377:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.24627685546875	2	455.273835	908.533118	0.073364	3.3401E-05	0.57545	0.00026199	0.64881	0.00029539	455.27386529615904	42.318	1.0005	42.195	41.603	42.604	-0.12299					44	26	3	0	0	0	0.02435	1	3751	3751		42.396	3.1433	1	171820			43976	13102	30389	30440	49441	49441					0.07519259419882474
LLPTQLGPA	9	Unmodified	_LLPTQLGPA_					0	0	0			REV__ENST00000375749.7_1_20:30822509-30822659:+|nuORF	REV__ENST00000375749.7_1_20:30822509-30822659:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.2464599609375	2	455.273835	908.533118	-0.31859	-0.00014504	0.50345	0.00022921	0.18486	8.4163E-05	455.2738497093351	42.519	0.86408	42.289	41.965	42.829	-0.23029					29	22	2	0	0	0	0.024381	1	3773	3773		37.159	0	1	146130	+		43977	31337	30390	30441	49442	49442					0.07519259419893842
LLPTYVGVEV	10	Unmodified	_LLPTYVGVEV_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.313232421875	2	545.313158	1088.61176	-0.78808	-0.00042975	1.4004	0.00076364	0.61229	0.00033389	545.3138812126966	100.73	0.99254	100.74	100.1	101.09	0.0090332					52	23	3	0	0	0	0.55296	2	12829	12829;12877		82.305	13.518	1	888250			43978	7399	30391	30442	49443;49444	49443					0.07100066934322058
LLPTYVGVEV	10	Unmodified	_LLPTYVGVEV_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3151245117188	2	545.313158	1088.61176	0.43093	0.00023499	2.4945	0.0013603	2.9255	0.0015953	545.314223860613	100.28	0.64389	100.16	100.07	100.71	-0.12503					33	20	2	0	0	0	0.55296	1	12478	12478		82.305	8.05	1	187590			43979	7399	30391	30442	49445	49445					0.07100066934322058
LLPTYVGVEV	10	Unmodified	_LLPTYVGVEV_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MSMS	OPSCC_40_ClassI_Rep-3	6	545.3152465820312	2	545.313158	1088.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.69	1	100.51	100.01	101.01	-0.17165								0	0	0	0.17839	1	12482	12482		102.77	17.858	1				43980	7399	30391	30442	49446	49446					0.07100066934322058
LLPTYVGVQV	10	Unmodified	_LLPTYVGVQV_					0	0	0		FAT3|p.E1901Q|1|0.25|ENSG00000165323|chr11:92799164-92799164|G/C|missense_variant	FAT3|p.E1901Q|1|0.25|ENSG00000165323|chr11:92799164-92799164|G/C|missense_variant	FAT3|p.E1901Q|1|0.25|ENSG00000165323|chr11:92799164-92799164|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.821533203125	2	544.82115	1087.62775	-0.21682	-0.00011813	0.31611	0.00017222	0.099289	5.4095E-05	544.8210100253785	98.776	1.4681	98.772	98.39	99.858	-0.0038834					119	33	4	0	0	0	0.60198	1	12600	12600		76.774	0	1	3155200			43981	17644	30392	30443	49447	49447					0.08743773171249813
LLPTYVGVQV	10	Unmodified	_LLPTYVGVQV_					0	0	0		FAT3|p.E1901Q|1|0.25|ENSG00000165323|chr11:92799164-92799164|G/C|missense_variant	FAT3|p.E1901Q|1|0.25|ENSG00000165323|chr11:92799164-92799164|G/C|missense_variant	FAT3|p.E1901Q|1|0.25|ENSG00000165323|chr11:92799164-92799164|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.8226318359375	2	544.82115	1087.62775	0.92508	0.000504	-0.73033	-0.0003979	0.19475	0.00010611	544.8205090762251	98.64	1.3744	98.515	98.197	99.571	-0.12413					70	34	3	0	0	0	0.42446	2	12255	12255;12271		96.19	8.4361	1	834230			43982	17644	30392	30443	49448;49449	49448					0.08743773171249813
LLPVDELFDVD	11	Unmodified	_LLPVDELFDVD_					0	0	0			REV__nc|ENSG00000288642|P51861|CDR1	REV__nc|ENSG00000288642|P51861|CDR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2562561035156	3	425.555338	1273.64418	-0.15055	-6.4068E-05	-3.5722	-0.0015202	-3.7227	-0.0015842	425.5538714572263	35.346	0.47084	35.39	35.229	35.699	0.04406					17	11	2	0	0	0	0.024731	1	2682	2682		24.232	0	1	79378	+		43983	37222	30393	30444	49450	49450					0.018308095466636587
LLPVDLAR	8	Unmodified	_LLPVDLAR_					0	0	0			REV__ENST00000460343.5_1_3:53260493-53260973:-|nuORF	REV__ENST00000460343.5_1_3:53260493-53260973:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.26153564453125	2	448.781828	895.549102	-0.029484	-1.3232E-05	0.39112	0.00017553	0.36164	0.0001623	448.78167213072055	41.411	0.56744	41.275	40.985	41.552	-0.13553					32	14	3	0	0	0	0.027866	1	3619	3619		37.159	5.2042	1	289960	+		43984	32845	30394	30445	49451	49451					0.09714965656792174
LLPVDLAR	8	Unmodified	_LLPVDLAR_					0	0	0			REV__ENST00000460343.5_1_3:53260493-53260973:-|nuORF	REV__ENST00000460343.5_1_3:53260493-53260973:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.26165771484375	2	448.781828	895.549102	-0.34101	-0.00015304	-0.17308	-7.7674E-05	-0.51409	-0.00023071	448.7820031108327	41.648	0.64788	41.417	41.003	41.651	-0.23029					33	16	3	0	0	0	0.027866	1	3645	3645		37.159	3.6435	1	291540	+		43985	32845	30394	30445	49452	49452					0.09714965656792174
LLPVGPPLN	9	Unmodified	_LLPVGPPLN_					0	0	0			REV__UBAP2L|p.P797L|1|0.16|ENSG00000143569|chr1:154257382-154257382|C/T|missense_variant	REV__UBAP2L|p.P797L|1|0.16|ENSG00000143569|chr1:154257382-154257382|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2831115722656	2	460.284203	918.553853	0.23853	0.00010979	-0.18491	-8.5112E-05	0.053616	2.4679E-05	460.28393771769186	65.263	1.4973	65.3	64.707	66.205	0.037384					107	40	3	0	0	0	0.64155	1	7622	7622		50.025	4.0726	1	2811200	+		43986	37749	30395	30446	49453	49453					0.09131849799564407
LLPVMLAYV	9	Unmodified	_LLPVMLAYV_					0	0	0			REV__ENST00000383729.8_2_3:49027379-49027721:+|nuORF	REV__ENST00000383729.8_2_3:49027379-49027721:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8041076660156	2	509.803914	1017.59328	0.52857	0.00026947	-0.9194	-0.00046871	-0.39083	-0.00019925	509.8032727891544	98.163	1.089	98.161	97.813	98.902	-0.0020752					57	25	4	0	0	0	0.93795	1	12443	12443		29.842	3.0454	1	775880	+		43987	31555	30396	30447	49454	49454					0.08518233758775295
LLPVPQVR	8	Unmodified	_LLPVPQVR_					0	0	0		ENST00000592703.1_1_19:16344886-16345243:+|nuORF	ENST00000592703.1_1_19:16344886-16345243:+|nuORF	ENST00000592703.1_1_19:16344886-16345243:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.2745361328125	2	461.297645	920.580737	-0.96704	-0.00044609	0.94244	0.00043475	-0.024593	-1.1344E-05	461.2978972157021	21.706	0.77759	21.494	21.02	21.798	-0.2128					32	15	3	0	0	0	0.027866	1	670	670		19.36	0	1	116810			43988	17380	30397	30448	49455	49455					0.11726958410747557
LLPVVISD	8	Unmodified	_LLPVVISD_					0	0	0		ENSG00000113361|ENST00000265071|CDH6;nc|ENSG00000113361|P55285-2|CDH6;ENST00000503958.1_1_5:24487774-24493064:-|nuORF	ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.26177978515625	2	428.262936	854.51132	0.49679	0.00021276	-3.3115	-0.0014182	-2.8147	-0.0012054	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0472	1	11414	11414		29.842	1.9593	1	86424000			43989	3285	30398	30449	49456	49456					0.0782445467133357
LLPVVISD	8	Unmodified	_LLPVVISD_					0	0	0		ENSG00000113361|ENST00000265071|CDH6;nc|ENSG00000113361|P55285-2|CDH6;ENST00000503958.1_1_5:24487774-24493064:-|nuORF	ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2617492675781	2	428.262936	854.51132	-0.55429	-0.00023738	-2.187	-0.0009366	-2.7413	-0.001174	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0574	2	11096	11096;11109		23.037	1.3344	1	83817000			43990	3285	30398	30449	49457;49458	49457					0.0782445467133357
LLPVVPHETT	10	Unmodified	_LLPVVPHETT_					0	0	0			REV__ENST00000525183.1_1_11:75848287-75852454:+|nuORF	REV__ENST00000525183.1_1_11:75848287-75852454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.3262329101562	2	553.316232	1104.61791	-1.2726	-0.00070414	1.8569	0.0010275	0.58433	0.00032332	553.3172495163178	65.368	0.54453	65.096	64.786	65.33	-0.27282					19	14	2	0	0	0	0.03519	1	7688	7688		38.806	20.482	1	391960	+		43991	34408	30399	30450	49459	49459					0.06978585165848017
LLPWGRVKLSN	11	Unmodified	_LLPWGRVKLSN_					0	0	0			REV__ENST00000586859.1_1_17:74039843-74041464:-|nuORF	REV__ENST00000586859.1_1_17:74039843-74041464:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8831787109375	2	641.885147	1281.75574	-0.57436	-0.00036868	-3.7858	-0.00243	-4.3602	-0.0027987	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0399	1	11614	11614		27.882	4.3595	1	1351900	+		43992	35609	30400	30451	49460	49460					0.12613333485137446
LLPWHKVLQR	10	Unmodified	_LLPWHKVLQR_					0	0	0		ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	646.3657836914062	2	645.395682	1288.77681	-0.031422	-2.028E-05	-2.1685	-0.0013996	-2.1999	-0.0014198	645.3941490760317	46.339	0.53277	46.077	45.854	46.387	-0.26118					37	13	4	0	0	0	0.03519	1	4458	4458		23.042	13.86	1	1139700			43993	14167	30401	30452	49461	49461					0.1439734358464193
LLPYCFCSL	9	Unmodified	_LLPYCFCSL_					0	0	0			REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.78466796875	2	529.756107	1057.49766	-0.10726	-5.6824E-05	1.4357	0.00076056	1.3284	0.00070374	529.7564338572568	72.002	1.27	71.74	71.075	72.345	-0.26199					52	30	3	0	0	0	0.024386	1	8492	8492		18.324	0	1	331290	+		43994	27143	30402	30453	49462	49462					-0.02878862423767714
LLPYIPII	8	Unmodified	_LLPYIPII_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2926330566406	2	471.307147	940.599741	-0.12817	-6.0406E-05	0.47995	0.0002262	0.35178	0.0001658	471.30759209556703	50.161	0.46352	50.161	49.878	50.341	0					16	13	2	0	0	0	0.027866	1	5228	5228		33.493	0	1	197280	+		43995	24952	30403	30454	49463	49463					0.12706494981796368
LLPYLGGL	8	Unmodified	_LLPYLGGL_					0	0	0		ENST00000338779.10_1_16:70714719-70719815:-|nuORF	ENST00000338779.10_1_16:70714719-70719815:-|nuORF	ENST00000338779.10_1_16:70714719-70719815:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.71990966796875	2	423.260197	844.50584	-0.55589	-0.00023528	-3.8047	-0.0016104	-4.3606	-0.0018457	423.25845048384724	40.005	0.53692	40.028	39.774	40.311	0.023006					31	14	3	0	0	0	0.027866	1	3416	3416		43.626	0	1	558310			43996	12448	30404	30455	49464	49464					0.07736775879516244
LLPYLIDFL	9	Unmodified	_LLPYLIDFL_					0	0	0			REV__ENST00000474067.5_1_7:17932997-17946875:-|nuORF	REV__ENST00000474067.5_1_7:17932997-17946875:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.83056640625	2	553.828443	1105.64233	0.28505	0.00015787	2.3481	0.0013004	2.6331	0.0014583	553.8296167290418	101.48	0.89046	101.36	101.07	101.96	-0.12576					50	21	4	0	0	0	0.80658	1	12631	12631		38.806	6.8513	1	571900	+		43997	33262	30405	30456	49465	49465					0.09373845319350949
LLPYLVQLN	9	Unmodified	_LLPYLVQLN_					0	0	0			REV__ENSG00000183196|ENST00000332272|CHST6	REV__ENSG00000183196|ENST00000332272|CHST6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7969360351562	2	536.823692	1071.63283	-0.89034	-0.00047796	3.2866	0.0017643	2.3962	0.0012863	536.8232135435943	76.363	0.62468	76.134	75.777	76.402	-0.22844					45	15	4	0	0	0	0.024386	1	9334	9334		33.516	0	1	352690	+		43998	23571	30406	30457	49466	49466					0.09988077033835907
LLQAALLCV	9	Unmodified	_LLQAALLCV_					0	0	0		ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28753662109375	2	472.285889	942.557224	0.48131	0.00022732	3.1588	0.0014918	3.6401	0.0017192	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.0101	1	11795	11795		18.324	0.95945	1	42478000			43999	4747	30407	30458	49467	49467					0.08364776581913702
LLQAIILLI	9	Unmodified	_LLQAIILLI_					0	0	0			REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	REV__ENST00000466132.5_1_6:31948575-31948888:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.3545227050781	2	505.354628	1008.6947	-0.99082	-0.00050072	0.84106	0.00042503	-0.14977	-7.5684E-05	505.35494830298984	90.481	0.98271	90.326	89.824	90.806	-0.1552					76	23	5	0	0	0	0.10076	1	11079	11079		110.34	11.708	1	4655800	+		44000	33021	30408	30459	49468	49468					0.19070428452994292
LLQALKPIP	9	Unmodified	_LLQALKPIP_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7850036621094	2	496.828778	991.643003	-0.033036	-1.6413E-05	0.25729	0.00012783	0.22426	0.00011142	496.82871555345355	90.391	1.2373	90.374	89.751	90.989	-0.016716					67	29	3	0	0	0	0.024535	1	11478	11478		25.45	0	1	366440			44001	4754	30409	30460	49469	49469					0.1468468475906093
LLQALLRR	8	Unmodified	_LLQALLRR_					0	0	0			REV__ENST00000420886.6_1_12:123778282-123778597:-|nuORF	REV__ENST00000420886.6_1_12:123778282-123778597:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.8294982910156	2	491.829643	981.644734	-0.13038	-6.4124E-05	-0.0029212	-1.4367E-06	-0.1333	-6.5561E-05	491.82958822725203	25.851	1.303	25.68	25.288	26.591	-0.17078					79	34	4	0	0	0	0.56067	1	1272	1272		79.939	8.5613	1	5567500	+		44002	32171	30410	30461	49470	49470					0.1531773856769405
LLQALLRR	8	Unmodified	_LLQALLRR_					0	0	0			REV__ENST00000420886.6_1_12:123778282-123778597:-|nuORF	REV__ENST00000420886.6_1_12:123778282-123778597:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.82928466796875	2	491.829643	981.644734	-0.94863	-0.00046656	0.49347	0.0002427	-0.45515	-0.00022386	491.82977338378083	26.034	1.2943	25.871	25.414	26.708	-0.16331					95	34	4	0	0	0	0.65272	1	1253	1253		71.378	8.0716	1	5966800	+		44003	32171	30410	30461	49471	49471					0.1531773856769405
LLQAPRQV	8	Unmodified	_LLQAPRQV_					0	0	0			REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.7855529785156	2	462.784902	923.55525	-0.2302	-0.00010654	-0.032676	-1.5122E-05	-0.26288	-0.00012166	462.7848338895305	43.425	1.1632	43.312	42.997	44.161	-0.11253					79	31	4	0	0	0	0.75307	1	4002	4002		62.978	0	1	9235900	+		44004	23741	30411	30462	49472	49472					0.0904148388832482
LLQAPRQVPR	10	Unmodified	_LLQAPRQVPR_					0	0	0			REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3429565429688	2	589.361839	1176.70913	-1.1276	-0.00066457	-0.39215	-0.00023112	-1.5198	-0.00089568	589.3622318956502	90.735	0.21072	90.718	90.612	90.823	-0.016716					6	4	2	0	0	0	0.03519	1	11434	11434		25.574	0	1	26654	+		44005	23741	30412	30463	49473	49473					0.12783893653841005
LLQAVFFVLFV	11	Unmodified	_LLQAVFFVLFV_					0	0	0		ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	648.3923950195312	2	648.391742	1294.76893	1.2288	0.00079673	0.39461	0.00025586	1.6234	0.0010526	648.3919129843497	105.35	0.84909	105.35	104.93	105.78	0.00096893					59	28	4	0	0	0	1.0442	1	13504	13504		26.693	2.1737	1	1056100			44006	10705	30413	30464	49474	49474					0.13333771544489537
LLQCALLVP	9	Unmodified	_LLQCALLVP_					0	0	0		ENST00000527780.5_1_19:50840286-50840625:-|nuORF	ENST00000527780.5_1_19:50840286-50840625:-|nuORF	ENST00000527780.5_1_19:50840286-50840625:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.81268310546875	2	485.293714	968.572874	0.35943	0.00017443	0.12548	6.0897E-05	0.48492	0.00023533	485.29379758104466	89.395	0.62891	89.374	88.95	89.579	-0.021645					22	14	2	0	0	0	0.024262	1	11230	11230		68.485	37.981	1	124290			44007	16162	30414	30465	49475	49475					0.08733063098964067
LLQCEGPYDAG	11	Unmodified	_LLQCEGPYDAG_					0	0	0			REV__nc|ENSG00000188157|O00468-4|AGRN	REV__nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.3341064453125	2	583.263339	1164.51212	0.021993	1.2828E-05	-2.7353	-0.0015954	-2.7133	-0.0015826	583.2618734455674	84.947	0.83479	84.809	84.533	85.368	-0.13753					26	19	2	0	0	0	0.024787	1	10269	10269		58.23	0	1	310820	+		44008	37039	30415	30466	49476	49476					-0.0635511874193071
LLQDGERRK	9	Unmodified	_LLQDGERRK_					0	0	0		ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2718505859375	2	557.820004	1113.62546	-0.24783	-0.00013824	0.62965	0.00035123	0.38183	0.00021299	557.8201489897577	41.084	0.42956	40.856	40.653	41.082	-0.2278					17	10	2	0	0	0	0.024541	1	3611	3611		14.865	2.658	1	170810			44009	11477	30416	30467	49477	49477					0.07318737486116333
LLQDGERRK	9	Unmodified	_LLQDGERRK_					0	0	0		ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.820004	1113.62546	0.19206	0.00010713	-0.30123	-0.00016803	-0.10917	-6.0897E-05	557.8198268334628	40.828	0.42878	40.828	40.587	41.016	0	-0.036451	-0.00071902	NaN	14.865	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236310			44010	11477	30416	30467							0.07318737486116333
LLQDGERRK	9	Unmodified	_LLQDGERRK_					0	0	0		ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.820004	1113.62546	0.34814	0.0001942	-0.71374	-0.00039814	-0.3656	-0.00020394	557.8197547782734	41.022	0.57331	40.899	40.547	41.12	-0.12318	0.034755	-0.0011792	NaN	14.865	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186950			44011	11477	30416	30467							0.07318737486116333
LLQDGERRK	9	Unmodified	_LLQDGERRK_					0	0	0		ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.820004	1113.62546	-0.03323	-1.8536E-05	-0.024776	-1.382E-05	-0.058005	-3.2357E-05	557.8201644516872	40.989	0.55996	41.012	40.764	41.324	0.023006	0.14713	-0.0004106	NaN	14.865	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175910			44012	11477	30416	30467							0.07318737486116333
LLQDGERRK	9	Unmodified	_LLQDGERRK_					0	0	0		ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.820004	1113.62546	-0.51718	-0.00028849	0.65568	0.00036575	0.1385	7.726E-05	557.8201909937453	40.852	0.42364	40.716	40.561	40.985	-0.13553	-0.14853	0.00034854	NaN	14.865	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185880			44013	11477	30416	30467							0.07318737486116333
LLQDGERRK	9	Unmodified	_LLQDGERRK_					0	0	0		ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	ENST00000261609.11_1_15:28465605-28465737:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.820004	1113.62546	-1.1119	-0.00062025	1.0751	0.00059971	-0.036811	-2.0534E-05	557.8206200542846	41.107	0.46143	40.876	40.696	41.157	-0.2303	0.011924	0.00081646	NaN	14.865	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127170			44014	11477	30416	30467							0.07318737486116333
LLQDGVLLL	9	Unmodified	_LLQDGVLLL_					0	0	0		ENST00000555658.5_1_14:89730286-89817056:-|nuORF	ENST00000555658.5_1_14:89730286-89817056:-|nuORF	ENST00000555658.5_1_14:89730286-89817056:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.3110656738281	2	492.310418	982.606283	-0.75733	-0.00037284	0.62395	0.00030718	-0.13338	-6.5664E-05	492.3106104748416	61.872	0.97343	61.694	61.37	62.343	-0.17781					60	24	5	0	0	0	0.40179	1	6973	6973		65.803	2.4969	1	7369600			44015	16686	30417	30468	49478	49478					0.11428388142530821
LLQDIKLLE	9	Unmodified	_LLQDIKLLE_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.8323364257812	2	542.834257	1083.65396	-0.11232	-6.0973E-05	0.74429	0.00040403	0.63197	0.00034306	542.834489656186	70.935	1.0846	70.721	70.484	71.568	-0.21425					60	25	4	0	0	0	0.48817	1	8265	8265		60.118	5.3419	1	2964900			44016	1175	30418	30469	49479	49479					0.11548042342701592
LLQDKQFEL	9	Unmodified	_LLQDKQFEL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF;ENST00000568029.5_1_15:42462052-42470793:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MSMS	OPSCC_39_ClassI_Rep-2	2	567.313232421875	2	567.313689	1132.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.517	1	61.291	60.791	61.791	-0.22663								0	0	0	0.014476	1	7091	7091		140.11	5.3015	1				44017	7621	30419	30470	49480	49480					0.05182281303223135
LLQDKQFEL	9	Unmodified	_LLQDKQFEL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF;ENST00000568029.5_1_15:42462052-42470793:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3135375976562	2	567.313689	1132.61282	-0.6797	-0.0003856	-1.4646	-0.00083089	-2.1443	-0.0012165	567.3125827975446	61.187	1.0852	61.258	60.871	61.956	0.071129					119	28	6	0	0	0	0.025498	1	6984	6984		145.16	37.068	1	3675200			44018	7621	30419	30470	49481	49481					0.05182281303223135
LLQDKQFEL	9	Unmodified	_LLQDKQFEL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF;ENST00000568029.5_1_15:42462052-42470793:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.313689	1132.61282	-0.03736	-2.1195E-05	-0.2798	-0.00015873	-0.31716	-0.00017993	567.3134799539212	61.527	0.82093	61.313	60.803	61.624	-0.21375	0.054237	-0.00027689	NaN	145.16	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	986150			44019	7621	30419	30470							0.05182281303223135
LLQDKQFEL	9	Unmodified	_LLQDKQFEL_					0	0	0		ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF;ENST00000568029.5_1_15:42462052-42470793:-|nuORF	ENSG00000166887|ENST00000318006|VPS39	ENSG00000166887|ENST00000318006|VPS39	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.313689	1132.61282	-0.77335	-0.00043873	0.43421	0.00024633	-0.33914	-0.0001924	567.3137973625577	61.381	0.70366	61.205	60.874	61.577	-0.1761	-0.053257	0.00053324	NaN	145.16	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753920			44020	7621	30419	30470							0.05182281303223135
LLQEFNKIE	9	Unmodified	_LLQEFNKIE_					0	0	0		ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2;ENST00000461880.5_1_6:31847863-31852380:-|nuORF	ENST00000494816.5_1_6:31847863-31852859:-|nuORF	ENST00000494816.5_1_6:31847863-31852859:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3135986328125	2	567.313689	1132.61282	-0.6797	-0.0003856	-1.4646	-0.00083089	-2.1443	-0.0012165	567.3125827975446	61.187	1.0852	61.258	60.871	61.956	0.071129					119	28	6	0	0	0	0.053401	1	6995	6995		127.46	1.6477	1	3675200			44021	10336	30420	30471	49482	49482					0.051822813032458726
LLQEHDDI	8	Unmodified	_LLQEHDDI_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.31353759765625	2	491.745639	981.476725	-0.18628	-9.1601E-05	0.68735	0.000338	0.50107	0.0002464	491.74531788391533	29.123	0.55402	28.973	28.7	29.254	-0.14952					15	12	2	0	0	0	0.027866	1	1713	1713		79.451	18.479	1	45535			44022	5269	30421	30472	49483	49483					-0.014754132074358495
LLQELDGLV	9	Unmodified	_LLQELDGLV_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	REV__nc|ENSG00000134369|Q8NEY1-6|NAV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27716064453125	2	500.289682	998.564812	0.2563	0.00012822	-0.13894	-6.9509E-05	0.11736	5.8715E-05	500.28912532796056	61.543	0.41994	61.316	61.153	61.573	-0.22663					15	10	2	0	0	0	0.024466	1	7072	7072		33.516	0	1	173490	+		44023	23446	30422	30473	49484	49484					0.06547207383175646
LLQERPAL	8	Unmodified	_LLQERPAL_					0	0	0		ENST00000508906.6_3_6:26370772-26373254:+|nuORF;ENST00000604202.1_1_6:26373056-26373254:+|nuORF	ENST00000508906.6_3_6:26370772-26373254:+|nuORF	ENST00000508906.6_3_6:26370772-26373254:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2843017578125	2	470.284734	938.554916	0.0042196	1.9844E-06	-0.25544	-0.00012013	-0.25122	-0.00011815	470.28431006075874	51.137	0.91824	50.988	50.657	51.575	-0.14916					51	25	3	0	0	0	0.78609	1	5393	5393		60.294	2.4827	1	2404100			44024	15796	30423	30474	49485	49485					0.08318064168463479
LLQESLAQA	9	Unmodified	_LLQESLAQA_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7715759277344	2	486.771657	971.528761	-0.29018	-0.00014125	0.64788	0.00031537	0.3577	0.00017412	486.7717964069689	56.783	0.93193	56.616	56.284	57.216	-0.1672					65	24	4	0	0	0	0.15366	1	6181	6181		98.629	0	1	3315800			44025	7794	30424	30475	49486	49486					0.04185750206318062
LLQESLAQA	9	Unmodified	_LLQESLAQA_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.771240234375	2	486.771657	971.528761	0.29267	0.00014246	0.023862	1.1615E-05	0.31653	0.00015408	486.77151810116993	56.862	0.99259	56.659	56.365	57.358	-0.20209					49	26	4	0	0	0	0.091713	1	6185	6185		113.41	11.811	1	3462100			44026	7794	30424	30475	49487	49487					0.04185750206318062
LLQESLAQA	9	Unmodified	_LLQESLAQA_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7708435058594	2	486.771657	971.528761	0.51551	0.00025093	-0.057427	-2.7954E-05	0.45808	0.00022298	486.7714146759232	56.877	1.6402	56.652	55.952	57.592	-0.22479					69	42	4	0	0	0	0.086035	1	6179	6179		115.49	10.747	1	2895100			44027	7794	30424	30475	49488	49488					0.04185750206318062
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.8035888671875	2	554.803488	1107.59242	-0.16624	-9.2232E-05	-0.39134	-0.00021712	-0.55758	-0.00030935	554.803157993252	54.753	0.66867	54.851	54.626	55.294	0.098015					33	18	2	0	0	0	0.015512	1	5941	5941		159.28	66.08	1	2588800			44028	2894	30425	30476	49489	49489					0.0429311064342528
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	554.803488	1107.59242	0.21369	0.00011855	-0.7183	-0.00039852	-0.50462	-0.00027996	554.8029669366796	55.008	0.87999	55.008	54.656	55.536	0	0.077369	-0.00050986	NaN	159.28	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1810900			44029	2894	30425	30476							0.0429311064342528
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.803488	1107.59242	-0.43379	-0.00024067	0.034793	1.9303E-05	-0.399	-0.00022137	554.8034259658795	55.134	0.69666	54.983	54.676	55.373	-0.15036	0.052498	0.00032578	NaN	159.28	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2382700			44030	2894	30425	30476							0.0429311064342528
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	554.803488	1107.59242	-0.1554	-8.6218E-05	-0.20596	-0.00011426	-0.36136	-0.00020048	554.8033476760276	55.176	0.68324	54.945	54.711	55.394	-0.23087	0.013999	5.8647E-05	NaN	159.28	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934520			44031	2894	30425	30476							0.0429311064342528
LLQEVEHQL	9	Unmodified	_LLQEVEHQL_					0	0	0		nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37;ENST00000582852.1_1_17:57141714-57157166:-|nuORF	nc|ENSG00000108395|O94972-2|TRIM37	nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	554.803488	1107.59242	0.0037783	2.0962E-06	-0.33779	-0.00018741	-0.33401	-0.00018531	554.803301340992	55.117	0.55866	54.911	54.685	55.244	-0.20613	-0.019956	-8.7637E-05	NaN	159.28	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953490			44032	2894	30425	30476							0.0429311064342528
LLQFPPEL	8	Unmodified	_LLQFPPEL_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7926330566406	2	478.776211	955.537869	-0.21766	-0.00010421	-3.0092	-0.0014407	-3.2269	-0.0015449	478.77639842157976	49.131	0.22754	49.03	48.88	49.107	-0.1008					6	5	2	0	0	0	0.027866	1	4913	4913		106.42	15.639	1	60792			44033	9027	30426	30477	49490	49490					0.058321435626680795
LLQGGRGRES	10	Unmodified	_LLQGGRGRES_					0	0	0			REV__ENST00000557815.1_1_15:70342626-70342737:-|nuORF	REV__ENST00000557815.1_1_15:70342626-70342737:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3424682617188	2	536.796529	1071.5785	-0.58089	-0.00031182	3.502	0.0018799	2.9211	0.0015681	536.798368255866	50.766	0.9057	50.617	50.356	51.261	-0.14916					63	22	3	0	0	0	0.03519	1	5290	5290		51.193	0	1	5278300	+		44034	35081	30427	30478	49491	49491					0.045578779349852994
LLQGQREQVE	10	Unmodified	_LLQGQREQVE_					0	0	0		ENST00000551848.1_1_12:32259795-32260041:+|nuORF	ENST00000551848.1_1_12:32259795-32260041:+|nuORF	ENST00000551848.1_1_12:32259795-32260041:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.3240356445312	2	600.322576	1198.6306	-0.23404	-0.0001405	2.0591	0.0012361	1.825	0.0010956	600.3237090836494	109.68	0.6177	109.68	109.53	110.15	0					61	26	5	0	0	0	1.0781	1	13959	13959		35.618	1.6967	1	1708800			44035	16608	30428	30479	49492	49492					0.03922996558071645
LLQGRNASI	9	Unmodified	_LLQGRNASI_					0	0	0		ENST00000360862.9_2_16:3534964-3535998:+|nuORF;ENST00000407558.8_1_16:3534861-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.8026123046875	2	486.285266	970.555979	0.56758	0.00027601	2.5534	0.0012417	3.1209	0.0015177	486.28735403273487	88.87	1.0182	88.848	88.139	89.157	-0.021645					48	23	3	0	0	0	0.024381	1	11137	11137		37.159	24.347	1	269350			44036	12779	30429	30480	49493	49493					0.0695227853735787
LLQGSDKGVE	10	Unmodified	_LLQGSDKGVE_					0	0	0		MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant;MDGA2|p.G845Dfs*4|1|0.65|ENSG00000139915|chr14:46873444-46873444|C/-|frameshift_variant;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2	MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.33447265625	2	523.279846	1044.54514	-0.32223	-0.00016861	1.248	0.00065306	0.92579	0.00048445	523.2805277615976	27.092	0.37633	26.924	26.723	27.099	-0.16816					15	8	2	0	0	0	0.03519	1	1458	1458		44.117	8.4985	1	90410			44037	5376	30430	30481	49494	49494					0.02464831372435583
LLQGSKRCVS	10	Unmodified	_LLQGSKRCVS_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8059692382812	2	545.805508	1089.59646	-0.40919	-0.00022334	0.92111	0.00050275	0.51192	0.00027941	545.8059104926652	72.971	1.6573	72.694	71.947	73.605	-0.2769					87	39	3	0	0	0	0.77808	1	8564	8564		62.107	1.1355	1	2256600	+		44038	23535	30431	30482	49495	49495					0.055248768654792
LLQGSKRCVS	10	Unmodified	_LLQGSKRCVS_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.805908203125	2	545.805508	1089.59646	-0.23169	-0.00012646	0.43553	0.00023772	0.20384	0.00011126	545.8057522238269	72.928	1.7259	72.663	71.881	73.607	-0.26479					117	41	5	0	0	0	0.96822	1	8558	8558		49.536	5.4192	1	2467500	+		44039	23535	30431	30482	49496	49496					0.055248768654792
LLQGYLWCLH	10	Unmodified	_LLQGYLWCLH_					0	0	0		ENST00000444527.2_1_8:56366358-56367090:-|nuORF	ENST00000444527.2_1_8:56366358-56367090:-|nuORF	ENST00000444527.2_1_8:56366358-56367090:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.90576171875	3	415.886476	1244.6376	0.14914	6.2027E-05	-3.4189	-0.0014219	-3.2698	-0.0013599	415.88516225063347	21.158	0.29527	21.23	21.106	21.401	0.071487					8	5	2	0	0	0	0.03519	1	574	574		17.468	0	1	13595			44040	14425	30432	30483	49497	49497					0.025066379049576426
LLQHGASL	8	Unmodified	_LLQHGASL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.22802734375	2	419.742702	837.470852	-0.36881	-0.0001548	-0.57425	-0.00024104	-0.94306	-0.00039584	419.74292453162667	25.862	0.47156	25.862	25.652	26.124	0					15	10	2	0	0	0	0.027866	1	1263	1263		29.15	0	1	24420			44041	2029	30433	30484	49498	49498					0.045615330715691016
LLQHLLLPS	9	Unmodified	_LLQHLLLPS_					0	0	0			REV__MYEOV|p.H301Q|1|0.69|ENSG00000172927|chr11:69296353-69296353|C/A|missense_variant	REV__MYEOV|p.H301Q|1|0.69|ENSG00000172927|chr11:69296353-69296353|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.3236083984375	2	517.32386	1032.63317	1.1431	0.00059133	-1.9138	-0.00099007	-0.77076	-0.00039873	517.3228706277799	63.83	1.3894	63.83	63.336	64.725	0					112	37	6	0	0	0	0.35646	1	7475	7475		68.787	6.6794	1	54186000	+		44042	36405	30434	30485	49499	49499					0.11815496753729349
LLQHVVPID	9	Unmodified	_LLQHVVPID_					0	0	0			REV__ENST00000587014.1_1_17:43180336-43181457:+|nuORF	REV__ENST00000587014.1_1_17:43180336-43181457:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3138427734375	2	517.305667	1032.59678	-0.35252	-0.00018236	1.5413	0.00079733	1.1888	0.00061497	517.3057757068237	97.837	1.1253	97.837	97.191	98.317	0					50	25	5	0	0	0	0.024436	1	12506	12506		38.806	3.6054	1	660340	+		44043	23656	30435	30486	49500	49500					0.08178619856994374
LLQKFEDKN	9	Unmodified	_LLQKFEDKN_					0	0	0			REV__ENSG00000106631|ENST00000223364|MYL7	REV__ENSG00000106631|ENST00000223364|MYL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.8109741210938	2	567.811313	1133.60807	0.3344	0.00018988	-1.4225	-0.00080772	-1.0881	-0.00061784	567.8103965361772	69.529	1.6331	69.236	68.405	70.038	-0.29292					131	41	6	0	0	0	0.42604	1	8339	8339		64.207	2.0999	1	12873000	+		44044	21632	30436	30487	49501	49501					0.04661397160475644
LLQKFGWTW	9	Unmodified	_LLQKFGWTW_					0	0	0		ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-3|TAS1R1;TAS1R1|p.L562Ffs*3|1|0.16|ENSG00000173662|chr1:6578740-6578741|-/T|frameshift_variant	ENSG00000173662|ENST00000333172|TAS1R1	ENSG00000173662|ENST00000333172|TAS1R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.8193969726562	2	589.821484	1177.62842	-0.61035	-0.00036	-2.1709	-0.0012805	-2.7813	-0.0016405	589.8199842203446	69.797	0.89934	69.575	69.266	70.165	-0.22245					63	20	4	0	0	0	0.33245	1	8089	8089		71.296	12.514	1	2633300			44045	8396	30437	30488	49502	49502					0.0467061261094841
LLQKGAGLL	9	Unmodified	_LLQKGAGLL_					0	0	0			REV__ENST00000551269.1_1_12:50037029-50037194:+|nuORF	REV__ENST00000551269.1_1_12:50037029-50037194:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.78717041015625	2	456.797478	911.580402	-0.19427	-8.8741E-05	0.17417	7.956E-05	-0.020099	-9.1811E-06	456.79720768485515	27.347	0.28975	27.191	27.018	27.307	-0.15664					10	6	2	0	0	0	0.024436	1	1464	1464		38.806	25.847	1	50438	+		44046	34929	30438	30489	49503	49503					0.1210753869090695
LLQKHANVPFF	11	Unmodified	_LLQKHANVPFF_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2481384277344	3	438.583674	1312.72919	0.48335	0.00021199	4.3931	0.0019268	4.8765	0.0021387	438.5856202259303	32.785	0.38637	32.848	32.653	33.039	0.062885					15	9	2	0	0	0	0.024845	1	2280	2280		10.104	0	1	123120			44047	262	30439	30490	49504	49504					0.08533644593762801
LLQKLVGTA	9	Unmodified	_LLQKLVGTA_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.30035400390625	2	471.80276	941.590967	-0.70646	-0.00033331	1.5299	0.00072183	0.82348	0.00038852	471.8027807635485	38.062	0.68063	37.841	37.613	38.294	-0.22148					27	19	3	0	0	0	0.024535	1	3133	3133		12.207	2.5012	1	485470	+		44048	22130	30440	30491	49505	49505					0.11783521345319059
LLQKPKIL	8	Unmodified	_LLQKPKIL_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.8027648925781	2	476.83132	951.648088	-0.3655	-0.00017428	-1.5728	-0.00074996	-1.9383	-0.00092424	476.83075278018845	33.749	0.2686	33.549	33.365	33.634	-0.20019					9	6	2	0	0	0	0.027866	1	2413	2413		8.2313	0	1	42376			44049	749	30441	30492	49506	49506					0.1703298862171323
LLQKQGVSL	9	Unmodified	_LLQKQGVSL_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30645751953125	2	493.305667	984.596781	1.0832	0.00053433	-1.5571	-0.00076813	-0.47394	-0.0002338	493.3048559255982	59.163	0.92426	59.163	58.787	59.711	0					76	24	4	0	0	0	0.83071	1	6730	6730		37.159	1.5408	1	8577700	+		44050	20906	30442	30493	49507	49507					0.10386619857001733
LLQKSHSP	8	Unmodified	_LLQKSHSP_					0	0	0			REV__nc|ENSG00000169635|Q96JB3-2|HIC2	REV__nc|ENSG00000169635|Q96JB3-2|HIC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.2428283691406	2	455.261259	908.507966	-0.2413	-0.00010985	3.8195	0.0017389	3.5782	0.001629	455.26209156581854	36.626	0.67838	36.583	36.208	36.887	-0.042458					33	17	3	0	0	0	0.027866	1	2870	2870		47.916	3.3845	1	128420	+		44051	26388	30443	30494	49508	49508					0.05005204617327763
LLQKWRNL	8	Unmodified	_LLQKWRNL_					0	0	0		ENST00000577583.1_1_17:27835094-27837891:+|nuORF	ENST00000577583.1_1_17:27835094-27837891:+|nuORF	ENST00000577583.1_1_17:27835094-27837891:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.8152465820312	2	535.827101	1069.63965	-0.85724	-0.00045933	-2.3425	-0.0012552	-3.1998	-0.0017145	535.826069113501	76.81	0.28854	76.582	76.402	76.691	-0.22843					9	6	2	0	0	0	0.027866	1	9450	9450		19.36	0	1	216240			44052	17118	30444	30495	49509	49509					0.10761434705068496
LLQLAITDT	9	Unmodified	_LLQLAITDT_					0	0	0		ENSG00000184999|ENST00000332793|SLC22A10;nc|ENSG00000184999|Q63ZE4-2|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	ENSG00000184999|ENST00000332793|SLC22A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.31573486328125	2	494.289682	986.564812	-0.87975	-0.00043485	1.3192	0.00065208	0.43948	0.00021723	494.29032019287763	80.909	0.32385	80.757	80.514	80.838	-0.15169					10	7	2	0	0	0	0.024323	1	10038	10038		35.618	1.4457	1	97688			44053	9393	30445	30496	49510	49510					0.0709920738316896
LLQLALRR	8	Unmodified	_LLQLALRR_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.82965087890625	2	491.829643	981.644734	-1.1272	-0.00055441	0.93504	0.00045988	-0.1922	-9.453E-05	491.8300297099961	26.132	1.2402	25.896	25.467	26.707	-0.23603					82	32	4	0	0	0	0.34196	1	1307	1307		105.27	13.078	1	5995500			44054	4086	30446	30497	49511	49511					0.1531773856769405
LLQLALRR	8	Unmodified	_LLQLALRR_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	491.829643	981.644734	-0.13038	-6.4124E-05	-0.0029212	-1.4367E-06	-0.1333	-6.5561E-05	491.82958822725203	25.851	1.303	25.68	25.288	26.591	-0.17078	-0.1354	-0.00043503	NaN	105.27	79	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5567500			44055	4086	30446	30497							0.1531773856769405
LLQLALRR	8	Unmodified	_LLQLALRR_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	491.829643	981.644734	-0.94863	-0.00046656	0.49347	0.0002427	-0.45515	-0.00022386	491.82977338378083	26.034	1.2943	25.871	25.414	26.708	-0.16331	0.054812	5.3248E-05	NaN	105.27	95	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5966800			44056	4086	30446	30497							0.1531773856769405
LLQLDRFQ	8	Unmodified	_LLQLDRFQ_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7844848632812	2	516.795466	1031.57638	-1.0305	-0.00053254	0.4647	0.00024015	-0.56577	-0.00029239	516.7954448914929	44.778	0.58808	44.678	44.28	44.868	-0.099445					28	14	3	0	0	0	0.027866	1	4148	4148		60.972	10.947	1	681650	+		44057	29123	30447	30498	49512	49512					0.06185449197187154
LLQLEELGF	9	Unmodified	_LLQLEELGF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.255615234375	2	531.297507	1060.58046	-1.7162	-0.00091179	-0.44167	-0.00023466	-2.1578	-0.0011464	531.29721870846	29.042	0.40354	29.042	28.82	29.223	0					16	9	2	0	0	0	0.024381	1	1719	1719		37.159	0	1	74824			44058	1685	30448	30499	49513	49513					0.05259493900234702
LLQLISIACN	10	Unmodified	_LLQLISIACN_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3146362304688	2	544.312635	1086.61072	-0.85438	-0.00046505	3.8212	0.0020799	2.9668	0.0016149	544.3146427028958	42.385	0.87344	42.155	41.797	42.67	-0.23029					65	23	4	0	0	0	1.0393	1	3817	3817		40.778	9.2484	1	2825900			44059	5790	30449	30500	49514	49514					0.07087529293767147
LLQLLVPS	8	Unmodified	_LLQLLVPS_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.78802490234375	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	1.0574	1	3656	3656		25.45	0	1	39693000	+		44060	22933	30450	30501	49515	49515					0.11308733942325944
LLQLLVPS	8	Unmodified	_LLQLLVPS_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7879638671875	2	441.786579	881.558604	-0.73639	-0.00032533	3.7839	0.0016717	3.0475	0.0013464	441.78816325900505	40.674	1.7833	40.537	40.09	41.874	-0.13704					126	47	4	0	0	0	1.0239	1	3520	3520		33.516	0	1	20144000	+		44061	22933	30450	30501	49516	49516					0.11308733942325944
LLQLLVPS	8	Unmodified	_LLQLLVPS_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7881164550781	2	441.786579	881.558604	-0.75125	-0.00033189	3.7526	0.0016578	3.0013	0.0013259	441.788141210744	40.907	2.019	40.676	40.158	42.177	-0.23029					183	54	5	0	0	0	0.99042	2	3537	3525;3537		38.806	0	1	21377000	+		44062	22933	30450	30501	49517;49518	49518					0.11308733942325944
LLQLPIVS	8	Unmodified	_LLQLPIVS_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.78814697265625	2	441.786579	881.558604	-0.29735	-0.00013137	3.287	0.0014522	2.9897	0.0013208	441.7879427918054	40.843	1.9371	40.615	40.184	42.121	-0.2278					180	51	6	0	0	0	1.0574	1	3543	3543		26.796	0	1	18973000	+		44063	28417	30451	30502	49519	49519					0.11308733942337312
LLQLTGDP	8	Unmodified	_LLQLTGDP_					0	0	0			REV__nc|ENSG00000145604|Q13309-4|SKP2	REV__nc|ENSG00000145604|Q13309-4|SKP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7947692871094	2	428.742368	855.470183	1.0235	0.0004388	-0.26992	-0.00011573	0.75353	0.00032307	428.7423618335501	64.078	0.8639	64.078	63.558	64.422	0					28	23	2	0	0	0	0.027866	1	7521	7521		33.516	14.156	1	181850	+		44064	24416	30452	30503	49520	49520					0.036666936318511034
LLQLVVGEI	9	Unmodified	_LLQLVVGEI_					0	0	0			REV__ENSG00000104549|ENST00000265896|SQLE	REV__ENSG00000104549|ENST00000265896|SQLE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.3109436035156	2	492.310418	982.606283	-0.57068	-0.00028095	0.52126	0.00025662	-0.049419	-2.433E-05	492.310576829834	61.96	0.86977	61.746	61.375	62.244	-0.21375					62	21	5	0	0	0	0.31247	2	6961	6961;6971		73.975	7.8149	1	6854900	+		44065	21451	30453	30504	49521;49522	49521					0.11428388142508084
LLQLYKKAL	9	Unmodified	_LLQLYKKAL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3164672851562	2	545.35516	1088.69577	-1.0108	-0.00055122	2.1577	0.0011767	1.1469	0.00062547	545.3554032530625	89.742	0.43115	89.58	89.257	89.688	-0.1626					15	9	3	0	0	0	0.024506	1	10921	10921		30.504	9.5567	1	65420	+		44066	24045	30454	30505	49523	49523					0.1549664282190406
LLQLYLQT	8	Unmodified	_LLQLYLQT_					0	0	0			REV__ENST00000303052.12_2_15:64463961-64464126:-|nuORF	REV__ENST00000303052.12_2_15:64463961-64464126:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7662658691406	2	496.294768	990.574983	-0.81288	-0.00040343	-0.38663	-0.00019188	-1.1995	-0.00059531	496.29477347786394	62.351	0.65508	62.173	61.728	62.383	-0.17781					36	16	4	0	0	0	0.027866	1	7001	7001		29.15	0	1	620120	+		44067	30087	30455	30506	49524	49524					0.0793181510841805
LLQMKQEHE	9	Unmodified	_LLQMKQEHE_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.2971801757812	2	578.294973	1154.57539	0.64454	0.00037274	-2.8142	-0.0016275	-2.1697	-0.0012547	578.2927912671993	99.091	0.79159	98.956	98.457	99.249	-0.13526					21	19	2	0	0	0	0.4752	1	12301	12301		60.972	4.2509	1	149930	+		44068	25841	30456	30507	49525	49525					0.004288667659920975
LLQMVNSPD	9	Unmodified	_LLQMVNSPD_					0	0	0			REV__RANBP6|p.A585P|1|0.65|ENSG00000137040|chr9:6013855-6013855|C/G|missense_variant	REV__RANBP6|p.A585P|1|0.65|ENSG00000137040|chr9:6013855-6013855|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3023376464844	2	508.757692	1015.50083	-0.40617	-0.00020664	-2.7741	-0.0014113	-3.1803	-0.001618	508.75795041131613	56.058	0.76355	55.902	55.704	56.468	-0.15602					26	20	2	0	0	0	0.022484	1	6182	6182		60.972	20.194	1	98783	+		44069	37426	30457	30508	49526	49526					-0.00629896045404621
LLQNEALSL	9	Unmodified	_LLQNEALSL_					0	0	0			REV__ENSG00000106809|ENST00000375561|OGN	REV__ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7867431640625	2	500.787307	999.560061	0.095134	4.7642E-05	0.41898	0.00020982	0.51411	0.00025746	500.786959413394	54.915	1.1172	54.915	54.492	55.61	0					125	31	6	0	0	0	0.11092	1	6027	6027		108.09	3.3409	1	4814600	+		44070	21645	30458	30509	49527	49527					0.060263232404167866
LLQNEKII	8	Unmodified	_LLQNEKII_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2662048339844	2	485.800217	969.585882	0.88529	0.00043007	-1.3681	-0.0006646	-0.48276	-0.00023453	485.79936753176764	67.936	0.62227	67.68	67.323	67.945	-0.25516					18	14	2	0	0	0	0.027866	1	7857	7857		47.916	0	1	129200			44071	1939	30459	30510	49528	49528					0.09987217482705546
LLQNKGDEV	9	Unmodified	_LLQNKGDEV_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1;REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.80242919921875	2	508.274564	1014.53457	-0.74757	-0.00037997	1.3	0.00066073	0.55239	0.00028076	508.27505351756906	37.451	0.47306	37.241	36.999	37.472	-0.2092					29	11	4	0	0	0	0.024495	1	2958	2958		34.173	8.7224	1	306030	+		44072	36628;22733	30460	30511	49529	49529					0.02788848718000736
LLQNLLFGSL	10	Unmodified	_LLQNLLFGSL_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2;SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000115616|ENST00000233969|SLC9A2;SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.320068359375	2	559.334424	1116.6543	-0.15654	-8.7558E-05	-0.11665	-6.5245E-05	-0.27319	-0.0001528	559.3340200540283	72.649	0.47211	72.372	72.154	72.626	-0.2769					17	10	2	0	0	0	0.03519	1	8529	8529		21.96	0	1	150370			44073	3474;8967	30461	30512	49530	49530					0.10063462062566941
LLQNSWPSL	9	Unmodified	_LLQNSWPSL_					0	0	0			REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3109741210938	2	529.287474	1056.5604	-0.94135	-0.00049824	1.1427	0.00060483	0.20138	0.00010659	529.2879390653762	56.887	0.509	56.887	56.678	57.187	0					31	14	3	0	0	0	0.023635	1	6398	6398		76.774	0	1	691590	+		44074	34364	30462	30513	49531	49531					0.034377429602727716
LLQNSWPSL	9	Unmodified	_LLQNSWPSL_					0	0	0			REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.287474	1056.5604	-0.5435	-0.00028767	0.59784	0.00031643	0.054339	2.8761E-05	529.287782398496	56.985	0.54303	56.818	56.637	57.18	-0.1672	-0.040134	0.00017958	NaN	76.774	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314290	+		44075	34364	30462	30513							0.034377429602727716
LLQNSWPSL	9	Unmodified	_LLQNSWPSL_					0	0	0			REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.287474	1056.5604	-0.095697	-5.0651E-05	0.028463	1.5065E-05	-0.067234	-3.5586E-05	529.2874240560667	57.04	0.83532	56.838	56.633	57.469	-0.20209	-0.02058	-0.00042315	NaN	76.774	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354070	+		44076	34364	30462	30513							0.034377429602727716
LLQNSWPSL	9	Unmodified	_LLQNSWPSL_					0	0	0			REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.287474	1056.5604	0.022548	1.1934E-05	-0.81292	-0.00043027	-0.79037	-0.00041833	529.2871566062471	57.076	0.47755	56.852	56.661	57.138	-0.22479	-0.0065758	-0.0013138	NaN	76.774	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350460	+		44077	34364	30462	30513							0.034377429602727716
LLQPERPLE	9	Unmodified	_LLQPERPLE_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-8|TSC2;ENST00000461648.2_1_16:2098014-2103834:+|nuORF	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MSMS	OPSCC_39_ClassI_Rep-3	3	547.8135375976562	2	547.813856	1093.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.388	1	56.486	55.986	56.986	0.097893								0	0	0	0.21285	1	6206	6206		74.255	2.9593	1				44078	2480	30463	30514	49532	49532					0.07009701023071102
LLQPGGLL	8	Unmodified	_LLQPGGLL_					0	0	0			REV__ENSG00000133812|ENST00000256190|SBF2	REV__ENSG00000133812|ENST00000256190|SBF2	MSMS	OPSCC_40_ClassI_Rep-3	6	405.75958251953125	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.99	1	113.85	113.35	114.35	-0.14429								0	0	0	1.3698	1	13699	13699		5.0869	0	1		+		44079	23398	30464	30515	49533	49533					0.08871891736771431
LLQPKLLPT	9	Unmodified	_LLQPKLLPT_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.83392333984375	2	511.83406	1021.65357	0.14912	7.6324E-05	-0.43638	-0.00022335	-0.28726	-0.00014703	511.8337258261736	73.134	1.103	72.862	72.435	73.538	-0.27142					83	27	4	0	0	0	0.12602	1	8893	8893		104.75	6.1172	1	5141900	+		44080	30722	30465	30516	49534	49534					0.14360667413507144
LLQPKLLPT	9	Unmodified	_LLQPKLLPT_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.8338317871094	2	511.83406	1021.65357	-0.21832	-0.00011174	0.17134	8.7698E-05	-0.046976	-2.4044E-05	511.83393937221024	72.986	0.72588	72.709	72.325	73.051	-0.27689					48	16	4	0	0	0	0.17455	2	8537	8537;8579		94.006	7.8149	1	1204300	+		44081	30722	30465	30516	49535;49536	49535					0.14360667413507144
LLQPLLGAQG	10	Unmodified	_LLQPLLGAQG_					0	0	0		ENSG00000108849|ENST00000225992|PPY;nc|ENSG00000108849|P01298-2|PPY	ENSG00000108849|ENST00000225992|PPY	ENSG00000108849|ENST00000225992|PPY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7882385253906	2	505.305667	1008.59678	-0.99396	-0.00050225	-2.107	-0.0010647	-3.1009	-0.0015669	505.3044853544493	20.288	0.62988	20.288	19.979	20.609	0					20	12	3	0	0	0	0.03519	1	524	524		29.15	0	1	35191			44082	2942	30466	30517	49537	49537					0.09282619857003738
LLQPLLPI	8	Unmodified	_LLQPLLPI_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.748779296875	2	453.804771	905.59499	-0.0029611	-1.3438E-06	0.35789	0.00016241	0.35493	0.00016107	453.8047308393287	81.28	1.3917	81.28	81.057	82.449	0					50	33	3	0	0	0	0.027866	1	10158	10158		15.636	0	1	472410	+		44083	20348	30467	30518	49538	49538					0.13841610839051555
LLQPPFFL	8	Unmodified	_LLQPPFFL_					0	0	0			REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7908020019531	2	487.789121	973.56369	0.37956	0.00018514	2.6849	0.0013097	3.0645	0.0014948	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.98906	1	10064	10064		39.021	3.8208	1	2659000	+		44084	32379	30468	30519	49539	49539					0.0758503780494948
LLQPPFFL	8	Unmodified	_LLQPPFFL_					0	0	0			REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.791015625	2	487.789121	973.56369	0.34339	0.0001675	3.571	0.0017419	3.9144	0.0019094	487.79092235400344	96.371	1.7522	96.235	95.853	97.605	-0.1367					89	39	4	0	0	0	1.0572	1	11896	11896		28.254	6.5519	1	805910	+		44085	32379	30468	30519	49540	49540					0.0758503780494948
LLQPPFFL	8	Unmodified	_LLQPPFFL_					0	0	0			REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	REV__ENST00000432246.1_1_10:93557707-93557869:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7906494140625	2	487.789121	973.56369	0.56547	0.00027583	2.4795	0.0012095	3.0449	0.0014853	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.98906	1	10023	10023		39.021	4.849	1	2408700	+		44086	32379	30468	30519	49541	49541					0.0758503780494948
LLQPQPPLL	9	Unmodified	_LLQPQPPLL_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8185119628906	2	509.81841	1017.62227	0.14516	7.4004E-05	-0.2681	-0.00013668	-0.12295	-6.2681E-05	509.81814647496833	74.804	1.4945	74.804	74.424	75.918	0					80	38	5	0	0	0	0.10076	1	9151	9151		110.34	24.428	1	4681000			44087	18125	30469	30520	49542	49542					0.11416094379421793
LLQPQPPLL	9	Unmodified	_LLQPQPPLL_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.81842041015625	2	509.81841	1017.62227	-0.37523	-0.0001913	0.13959	7.1167E-05	-0.23564	-0.00012013	509.81832895541544	74.839	1.3009	74.849	74.523	75.824	0.010376					68	33	4	0	0	0	0.14199	2	9092	9080;9092		101.21	11.564	1	4218300			44088	18125	30469	30520	49543;49544	49544					0.11416094379421793
LLQPVSNSL	9	Unmodified	_LLQPVSNSL_					0	0	0			REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.78094482421875	2	485.782025	969.549496	-0.47452	-0.00023051	0.22453	0.00010907	-0.24999	-0.00012144	485.78207533675146	70.6	0.93386	70.613	70.347	71.28	0.012421					35	22	3	0	0	0	0.43628	1	8468	8468		63.534	7.1001	1	961980	+		44089	29010	30470	30521	49545	49545					0.06350340586004677
LLQQELEEL	9	Unmodified	_LLQQELEEL_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.3239135742188	2	557.803154	1113.59175	-0.11215	-6.2556E-05	0.71036	0.00039624	0.59821	0.00033369	557.804005143476	76.079	0.19398	75.911	75.778	75.972	-0.16854					5	4	2	0	0	0	0.0242	1	9012	9012		60.118	18.692	1	55290			44090	2250	30471	30522	49546	49546					0.039502712037119636
LLQQEQSDP	9	Unmodified	_LLQQEQSDP_					0	0	0			REV__ENSG00000165891|ENST00000322886|E2F7;REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.3213500976562	2	529.261653	1056.50875	-0.13106	-6.9364E-05	-1.6525	-0.00087461	-1.7836	-0.00094397	529.2606942874021	82.676	0.64977	82.495	82.201	82.85	-0.18079					23	14	3	0	0	0	0.024457	1	10009	10009		15.642	0	1	194270	+		44091	25941;34936	30472	30523	49547	49547					-0.01724045524269968
LLQQGRLP	8	Unmodified	_LLQQGRLP_					0	0	0		ENST00000578961.5_1_17:73389657-73389774:-|nuORF	ENST00000578961.5_1_17:73389657-73389774:-|nuORF	ENST00000578961.5_1_17:73389657-73389774:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.7847900390625	2	462.784902	923.55525	-0.89185	-0.00041274	-0.053802	-2.4899E-05	-0.94566	-0.00043764	462.7849063720639	43.586	1.1809	43.367	43.068	44.249	-0.21938					83	32	4	0	0	0	0.71717	3	3988	3988;4000;4012		65.897	2.0065	1	15075000			44092	17136	30473	30524	49548;49549;49550	49548					0.09041483888336188
LLQQQFHSPL	10	Unmodified	_LLQQQFHSPL_					0	0	0			REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1	REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	606.8322143554688	2	605.83258	1209.65061	-0.77884	-0.00047185	0.92225	0.00055873	0.14341	8.6882E-05	605.8330131654886	54.495	0.3489	54.593	54.458	54.807	0.098011					14	9	2	0	0	0	0.03519	1	5886	5886		37.812	0	1	136070	+		44093	19179	30474	30525	49551	49551					0.05416792288724537
LLQQQQRRRAT	11	Unmodified	_LLQQQQRRRAT_					0	0	0			REV__ENSG00000111052|ENST00000552864|LIN7A	REV__ENSG00000111052|ENST00000552864|LIN7A	MSMS	OPSCC_39_ClassI_Rep-3	3	466.6081237792969	3	466.607652	1396.80113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.704	1	99.699	99.199	100.2	-0.0050888								0	0	0	1.3642	1	12672	12672		22.562	4.0305	1		+		44094	21891	30475	30526	49552	49552					0.11859952000213525
LLQQQQRRRAT	11	Unmodified	_LLQQQQRRRAT_					0	0	0			REV__ENSG00000111052|ENST00000552864|LIN7A	REV__ENSG00000111052|ENST00000552864|LIN7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6083679199219	3	466.607652	1396.80113	0.67563	0.00031525	0.22198	0.00010358	0.89761	0.00041883	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0621	1	12457	12457		21.78	0	1	1258700	+		44095	21891	30475	30526	49553	49553					0.11859952000213525
LLQQQQRRRAT	11	Unmodified	_LLQQQQRRRAT_					0	0	0			REV__ENSG00000111052|ENST00000552864|LIN7A	REV__ENSG00000111052|ENST00000552864|LIN7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.6083068847656	3	466.607652	1396.80113	0.78149	0.00036465	0.025596	1.1943E-05	0.80709	0.00037659	466.60760028685866	100.08	2.3153	99.953	99.233	101.55	-0.12504					111	64	3	0	0	0	0.024757	1	12480	12480		20.315	0	1	757670	+		44096	21891	30475	30526	49554	49554					0.11859952000213525
LLQRHRLV	8	Unmodified	_LLQRHRLV_					0	0	0		ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B	ENSG00000183336|ENST00000330978|BOLA2	ENSG00000183336|ENST00000330978|BOLA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7998046875	2	517.832717	1033.65088	0.50034	0.00025909	-1.5898	-0.00082326	-1.0895	-0.00056417	518.33304705882	104.83	0.19851	104.67	104.55	104.75	-0.16484					6	5	2	0	0	0	0.027866	1	13034	13034		21.702	11.437	1	16863			44097	7959	30476	30527	49555	49555					0.13540256799205963
LLQRIKSLNPN	11	Unmodified	_LLQRIKSLNPN_					0	0	0		ENST00000260665.11_1_2:44126637-44126715:-|nuORF	ENST00000260665.11_1_2:44126637-44126715:-|nuORF	ENST00000260665.11_1_2:44126637-44126715:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.59820556640625	3	432.597983	1294.77212	-0.63305	-0.00027386	-0.074467	-3.2214E-05	-0.70752	-0.00030607	432.5978350493493	105.5	0.80409	105.37	104.9	105.71	-0.13099					65	27	4	0	0	0	1.0872	1	13143	13143		18.531	3.8374	1	1683800			44098	11453	30477	30528	49556	49556					0.13652414651232903
LLQRIVERH	9	Unmodified	_LLQRIVERH_					0	0	0			REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	REV__nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.3536376953125	2	582.354014	1162.69348	-1.4953	-0.00087077	0.5142	0.00029945	-0.98105	-0.00057132	582.3541963101079	102.27	0.85596	102.27	101.95	102.81	0					90	19	7	0	0	0	0.98128	1	13135	13135		24.203	1.1603	1	8600900	+		44099	27103	30478	30529	49557	49557					0.1186360713677459
LLQRLISN	8	Unmodified	_LLQRLISN_					0	0	0		ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26348876953125	2	478.798009	955.581465	-1.3892	-0.00066514	-0.43429	-0.00020794	-1.8235	-0.00087307	478.79829262235717	38.591	1.0151	38.618	38.23	39.245	0.027275					69	27	3	0	0	0	0.027866	1	3270	3270		60.972	0	1	1628900			44100	11092	30479	30530	49558	49558					0.10189753059796658
LLQRLLNPD	9	Unmodified	_LLQRLLNPD_					0	0	0			REV__nc|ENSG00000095787|Q9BTA9-5|WAC	REV__nc|ENSG00000095787|Q9BTA9-5|WAC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3240966796875	2	541.321848	1080.62914	-0.98465	-0.00053301	-0.086361	-4.6749E-05	-1.071	-0.00057976	541.3217675287749	60.274	2.0855	60.073	59.356	61.442	-0.2004					144	55	4	0	0	0	0.56934	1	6876	6876		54.776	1.4249	1	23185000	+		44101	20975	30480	30531	49559	49559					0.09205407259992171
LLQRRGVPGGP	11	Unmodified	_LLQRRGVPGGP_					0	0	0		ENSG00000166106|ENST00000299164|ADAMTS15	ENSG00000166106|ENST00000299164|ADAMTS15	ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.3450927734375	2	575.346189	1148.67783	-0.38187	-0.0002197	-0.74323	-0.00042762	-1.1251	-0.00064732	575.3456405295979	97.221	1.199	97.06	96.639	97.838	-0.16106					88	26	5	0	0	0	1.0651	1	11982	11982		20.947	1.8434	1	4066100			44102	7504	30481	30532	49560	49560					0.10943320619753649
LLQSAWME	8	Unmodified	_LLQSAWME_					0	0	0		nc|ENSG00000196482|P62508-4|ESRRG;nc|ENSG00000119715|O95718|ESRRB;nc|ENSG00000196482|P62508-2|ESRRG;nc|ENSG00000196482|P62508-3|ESRRG;ENSG00000119715|ENST00000644823|ESRRB;ENSG00000196482|ENST00000408911|ESRRG;nc|ENSG00000196482|P62508-5|ESRRG;nc|ENSG00000119715|O95718-2|ESRRB;nc|ENSG00000119715|O95718-1|ESRRB	nc|ENSG00000196482|P62508-4|ESRRG	nc|ENSG00000196482|P62508-4|ESRRG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265869140625	2	489.241678	976.468803	-1.0868	-0.00053171	1.1295	0.00055258	0.042643	2.0863E-05	489.242362574219	55.922	0.10678	55.765	55.713	55.82	-0.15656					4	2	2	0	0	0	0.027866	1	6040	6040		45.952	0	1	102540			44103	3760	30482	30533	49561	49561					-0.020372637285504425
LLQSKSHGQ	9	Unmodified	_LLQSKSHGQ_					0	0	0			REV__nc|ENSG00000119596|P49750-1|YLPM1	REV__nc|ENSG00000119596|P49750-1|YLPM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.80078125	2	499.274898	996.535243	-0.33091	-0.00016521	0.61119	0.00030515	0.28029	0.00013994	499.275054082285	31.224	0.46567	31.236	30.999	31.465	0.011797					16	10	2	0	0	0	0.024427	1	2080	2080		26.693	0	1	123500	+		44104	22466	30483	30534	49562	49562					0.03683688157718734
LLQSNKVQL	9	Unmodified	_LLQSNKVQL_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.319091796875	2	521.816399	1041.61824	-0.67651	-0.00035301	0.85683	0.00044711	0.18033	9.4097E-05	521.8170059460965	64.752	0.94876	64.792	64.442	65.391	0.039429					77	25	5	0	0	0	0.62163	1	7578	7578		51.335	0	1	9637600	+		44105	26887	30484	30535	49563	49563					0.09910004885705348
LLQSPLPSL	9	Unmodified	_LLQSPLPSL_					0	0	0			REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF	REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.295166015625	2	484.294768	966.574983	0.9232	0.0004471	-0.98318	-0.00047615	-0.059989	-2.9052E-05	484.29428972571293	85.173	0.99649	85.173	84.792	85.789	0					66	23	4	0	0	0	0.067814	1	10692	10692		122.18	14.088	1	1900400	+		44106	33658	30485	30536	49564	49564					0.09035815108438783
LLQSPLPSL	9	Unmodified	_LLQSPLPSL_					0	0	0			REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF	REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2950439453125	2	484.294768	966.574983	-0.49564	-0.00024004	0.5208	0.00025222	0.025164	1.2187E-05	484.29499537271585	85.139	1.1595	85.082	84.732	85.891	-0.057617					70	27	4	0	0	0	0.12602	2	10650	10650;10662		104.75	5.4543	1	1940500	+		44107	33658	30485	30536	49565;49566	49565					0.09035815108438783
LLQSPLPSL	9	Unmodified	_LLQSPLPSL_					0	0	0			REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF	REV__ENST00000583582.5_1_17:37814522-37814894:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2948913574219	2	484.294768	966.574983	-0.85399	-0.00041358	0.78174	0.00037859	-0.072255	-3.4993E-05	484.29513721707673	85.115	1.0742	85.141	84.788	85.862	0.025536					70	25	4	0	0	0	0.17822	1	10578	10578		93.195	2.4188	1	2059500	+		44108	33658	30485	30536	49567	49567					0.09035815108438783
LLQSVSTLD	9	Unmodified	_LLQSVSTLD_					0	0	0			REV__ENST00000471224.5_1_19:24014515-24014623:+|nuORF	REV__ENST00000471224.5_1_19:24014515-24014623:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7889709472656	2	488.27149	974.528426	0.33649	0.0001643	0.070288	3.432E-05	0.40677	0.00019862	488.2696303581104	81.099	0.28932	80.894	80.788	81.078	-0.20512					9	6	2	0	0	0	0.024427	1	9763	9763		34.173	0	1	45253	+		44109	33171	30486	30537	49568	49568					0.0401433048649551
LLQTLSKVPKA	11	Unmodified	_LLQTLSKVPKA_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.3792724609375	2	599.381906	1196.74926	-0.0023505	-1.4088E-06	-3.1	-0.0018581	-3.1023	-0.0018595	599.3799609845375	102.37	0.72133	102.24	101.99	102.71	-0.12931					46	16	4	0	0	0	1.0238	1	12724	12724		31.53	0	1	899540	+		44110	23803	30487	30538	49569	49569					0.15875395533748815
LLQVGGEKI	9	Unmodified	_LLQVGGEKI_					0	0	0			REV__ENST00000420492.2_1_9:101369387-101369513:+|nuORF	REV__ENST00000420492.2_1_9:101369387-101369513:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7926330566406	2	478.792392	955.570232	-0.17572	-8.4133E-05	-0.030657	-1.4678E-05	-0.20638	-9.8812E-05	478.79217366850173	49.101	1.0232	49	48.689	49.713	-0.1008					69	26	4	0	0	0	0.086035	1	4913	4913		115.49	10.747	1	3116300	+		44111	22650	30488	30539	49570	49570					0.09066930965661868
LLQVIKEKN	9	Unmodified	_LLQVIKEKN_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.R628Pfs*12|1|0.57|ENSG00000147234|chrX:107597659-107597660|-/C|frameshift_variant	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.831787109375	2	542.839874	1083.66519	-0.61379	-0.00033319	2.5153	0.0013654	1.9015	0.0010322	542.8410428088989	71.366	0.41695	71.377	71.162	71.579	0.010735					18	10	2	0	0	0	0.024374	1	8559	8559		49.442	12.282	1	418820			44112	5949	30489	30540	49571	49571					0.12670864436836382
LLQVNKLE	8	Unmodified	_LLQVNKLE_					0	0	0		ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7923889160156	2	478.792392	955.570232	-0.17572	-8.4133E-05	-0.030657	-1.4678E-05	-0.20638	-9.8812E-05	478.79217366850173	49.101	1.0232	49	48.689	49.713	-0.1008					69	26	4	0	0	0	0.18427	2	4903	4903;4925		143.11	0	1	3116300			44113	7575	30490	30541	49572;49573	49572					0.09066930965650499
LLQVNKLE	8	Unmodified	_LLQVNKLE_					0	0	0		ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.79248046875	2	478.792392	955.570232	-0.1591	-7.6175E-05	-0.26547	-0.00012711	-0.42457	-0.00020328	478.79207141351003	49.351	0.9383	49.071	48.791	49.729	-0.27977					60	24	3	0	0	0	0.20995	3	4943	4932;4943;4955		138.83	0	1	3323600			44114	7575	30490	30541	49574;49575;49576	49575					0.09066930965650499
LLQVNKLE	8	Unmodified	_LLQVNKLE_					0	0	0		ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	ENSG00000166510|ENST00000591504|CCDC68	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7919006347656	2	478.792392	955.570232	0.1056	5.056E-05	-0.45587	-0.00021827	-0.35027	-0.0001677	478.79194578600783	49.237	0.97733	49.055	48.702	49.68	-0.18206					57	25	4	0	0	0	0.20995	2	4915	4915;4938		138.83	0	1	3193100			44115	7575	30490	30541	49577;49578	49577					0.09066930965650499
LLQWICDL	8	Unmodified	_LLQWICDL_					0	0	0			REV__MTMR8|p.M410L|1|0.09|ENSG00000102043|chrX:64331681-64331681|T/A|missense_variant	REV__MTMR8|p.M410L|1|0.09|ENSG00000102043|chrX:64331681-64331681|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2898254394531	2	502.267696	1002.52084	-0.54422	-0.00027334	-0.5508	-0.00027665	-1.095	-0.00054999	502.77018255698295	83.14	0.59879	83.14	82.878	83.477	0					21	13	2	0	0	0	0.027866	1	10402	10402		19.36	0	1	54837	+		44116	36400	30491	30542	49579	49579					0.019678996852007913
LLQYFKITL	9	Unmodified	_LLQYFKITL_					0	0	0		ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.8461303710938	2	569.847167	1137.67978	-0.67345	-0.00038376	-2.1763	-0.0012402	-2.8498	-0.0016239	569.8458069104875	38.496	1.0276	38.414	38.116	39.143	-0.082512					80	27	4	0	0	0	0.72875	1	3220	3220		44.117	0	1	1830600			44117	12943	30492	30543	49580	49580					0.11644936584980314
LLQYLLQG	8	Unmodified	_LLQYLLQG_					0	0	0		ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	ENSG00000128564|ENST00000249330|VGF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7648010253906	2	474.28166	946.548768	0.13131	6.2278E-05	0.20066	9.5171E-05	0.33197	0.00015745	474.28165896152115	91.634	0.69271	91.494	91.231	91.924	-0.13942					26	15	2	0	0	0	0.027866	1	11277	11277		24.203	0	1	219510			44118	4295	30493	30544	49581	49581					0.07335545936950894
LLRAAHQPDS	10	Unmodified	_LLRAAHQPDS_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.3005981445312	2	554.298904	1106.58326	0.2306	0.00012782	3.5883	0.001989	3.8189	0.0021168	554.3007485676574	77.345	0.79958	77.083	76.813	77.612	-0.26202					42	19	3	0	0	0	0.80817	1	9221	9221		60.118	1.3363	1	1356500	+		44119	29116	30494	30545	49582	49582					0.034227620777301127
LLRAAPGPG	9	Unmodified	_LLRAAPGPG_					0	0	0			REV__ENST00000310331.2_1_5:139927339-139928819:+|nuORF	REV__ENST00000310331.2_1_5:139927339-139928819:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.246337890625	2	426.25852	850.502486	0.40512	0.00017268	3.552	0.0015141	3.9571	0.0016868	426.25967893824065	86.926	0.5073	86.788	86.53	87.038	-0.13734					15	11	2	0	0	0	0.024357	1	10530	10530		7.6903	0	1	59993	+		44120	30180	30495	30546	49583	49583					0.07125525825517798
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.3365478515625	2	490.33677	978.658987	-0.23798	-0.00011669	0.20669	0.00010135	-0.031288	-1.5341E-05	490.3366994535845	82.387	2.6741	82.387	81.83	84.504	0					133	62	4	0	0	0	0.78069	1	10314	10314		40.573	8.6178	1	869100			44121	1413	30496	30547	49584	49584					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.3368835449219	2	490.33677	978.658987	-0.45529	-0.00022325	0.18206	8.9272E-05	-0.27323	-0.00013397	490.33678673635853	81.617	1.9966	81.486	81.135	83.131	-0.13075					80	47	3	0	0	0	0.78069	1	10115	10115		40.573	1.7665	1	6795700			44122	1413	30496	30547	49585	49585					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.336669921875	2	490.33677	978.658987	1.2361	0.00060612	-1.3661	-0.00066985	-0.12997	-6.3728E-05	490.33599853639276	82.584	2.4277	82.474	81.881	84.309	-0.11006					90	56	2	0	0	0	0.29104	2	10303	10303;10333		76.847	13.868	1	861240			44123	1413	30496	30547	49586;49587	49586					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.33677	978.658987	0.30362	0.00014888	-0.11965	-5.8668E-05	0.18397	9.0207E-05	490.3369082684649	82.577	0.47806	82.396	82.244	82.722	-0.18079	-0.023137	0.00041667	NaN	76.847	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48820			44124	1413	30496	30547							0.16880390995981998
LLRAASVRKKH	11	Unmodified	_LLRAASVRKKH_					0	0	0			REV__ENSG00000089250|ENST00000317775|NOS1	REV__ENSG00000089250|ENST00000317775|NOS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2657470703125	3	426.942084	1277.80442	-0.10079	-4.303E-05	-0.055203	-2.3569E-05	-0.15599	-6.6598E-05	426.9421592370942	42.517	0.91901	42.385	42.115	43.034	-0.13219					55	25	4	0	0	0	0.024779	1	3905	3905		27.644	17.54	1	1180200	+		44125	20851	30497	30548	49588	49588					0.17663246844881542
LLRAATIDD	9	Unmodified	_LLRAATIDD_					0	0	0			REV__ENST00000494490.1_3_15:57999305-58006874:+|nuORF;REV__nc|ENSG00000263155|P0CAP1-11|MYZAP	REV__nc|ENSG00000263155|P0CAP1-11|MYZAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.81597900390625	2	494.277106	986.53966	-0.21832	-0.00010791	1.7784	0.00087904	1.5601	0.00077113	494.2772882322601	67.402	1.0843	67.114	66.548	67.632	-0.28834					37	26	2	0	0	0	0.024495	1	7968	7968		26.693	0	1	597170	+		44126	29068;37189	30498	30549	49589	49589					0.04585152580614249
LLRAEPGMGG	10	Unmodified	_LLRAEPGMGG_					0	0	0		ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7506103515625	2	500.765852	999.51715	-0.27753	-0.00013898	-0.79532	-0.00039827	-1.0729	-0.00053725	500.7664773374391	36.41	0.83352	36.205	35.852	36.685	-0.20518					32	21	3	0	0	0	0.03519	1	2797	2797		42.396	14.142	1	183500			44127	11898	30499	30550	49590	49590					0.017372299113617373
LLRAEPGMGG	10	Unmodified	_LLRAEPGMGG_					0	0	0		ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.765852	999.51715	0.1404	7.0305E-05	-0.82447	-0.00041287	-0.68408	-0.00034256	500.7654567641477	36.393	0.66907	36.176	35.981	36.65	-0.21661	0.020072	0.00036183	NaN	31.53	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177220			44128	11898	30499	30550							0.017372299113617373
LLRAEPGMGG	10	Unmodified	_LLRAEPGMGG_					0	0	0		ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	ENST00000300179.6_1_7:100081575-100084449:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.765852	999.51715	1.0205	0.00051104	-1.9697	-0.00098634	-0.94914	-0.0004753	500.76479990363174	36.285	0.66006	36.087	35.876	36.536	-0.19829	-0.06908	-0.00078511	NaN	31.53	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123080			44129	11898	30499	30550							0.017372299113617373
LLRAHSCAP	9	Unmodified	_LLRAHSCAP_					0	0	0		nc|ENSG00000143845|Q9NVF9-3|ETNK2;ENSG00000143845|ENST00000367202|ETNK2;nc|ENSG00000143845|Q9NVF9-2|ETNK2	nc|ENSG00000143845|Q9NVF9-3|ETNK2	nc|ENSG00000143845|Q9NVF9-3|ETNK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.7667236328125	2	484.260736	966.50692	-0.019979	-9.6748E-06	1.3156	0.00063712	1.2957	0.00062744	484.25802662178376	27.327	1.0094	27.17	26.715	27.724	-0.15664					63	23	5	0	0	0	0.90698	1	1475	1475		31.955	2.8053	1	3021700			44130	5694	30500	30551	49591	49591					0.02232666976760811
LLRALAALL	9	Unmodified	_LLRALAALL_					0	0	0			REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.3291015625	2	477.328945	952.643337	0.55973	0.00026718	-0.35501	-0.00016946	0.20472	9.7718E-05	477.3286239558356	78.319	2.5845	78.319	78.042	80.626	0					138	61	4	0	0	0	0.29104	1	9695	9695		76.847	2.8719	1	3617800	+		44131	26153	30501	30552	49592	49592					0.16512104478943002
LLRALAALL	9	Unmodified	_LLRALAALL_					0	0	0			REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.3288879394531	2	477.328945	952.643337	-0.068032	-3.2473E-05	0.2106	0.00010053	0.14257	6.8053E-05	477.3289054610907	78.443	2.1561	78.459	78.155	80.311	0.015907					129	51	4	0	0	0	0.60698	1	9666	9666		52.299	0	1	3587800	+		44132	26153	30501	30552	49593	49593					0.16512104478943002
LLRALAALL	9	Unmodified	_LLRALAALL_					0	0	0			REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.328945	952.643337	0.15595	7.4438E-05	-0.13113	-6.2591E-05	0.02482	1.1847E-05	477.32868909541503	78.49	0.64546	78.235	77.869	78.514	-0.25471	-0.02763	6.4685E-05	NaN	76.847	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322240	+		44133	26153	30501	30552							0.16512104478943002
LLRALAALL	9	Unmodified	_LLRALAALL_					0	0	0			REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.328945	952.643337	0.36142	0.00017251	-0.36487	-0.00017416	-0.0034487	-1.6462E-06	477.3286401365891	78.344	0.72961	78.112	77.834	78.563	-0.23141	-0.1509	-0.00015845	NaN	76.847	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471820	+		44134	26153	30501	30552							0.16512104478943002
LLRALAALL	9	Unmodified	_LLRALAALL_					0	0	0			REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.328945	952.643337	0.081903	3.9095E-05	-0.1526	-7.2842E-05	-0.070701	-3.3748E-05	477.32874623424505	78.257	0.64278	78.101	77.784	78.427	-0.15591	-0.16228	4.4183E-05	NaN	76.847	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570590	+		44135	26153	30501	30552							0.16512104478943002
LLRALLLKHS	10	Unmodified	_LLRALLLKHS_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1;SLC4A1|p.V797Sfs*32|1|0.27|ENSG00000004939|chr17:44251511-44251511|C/-|frameshift_variant	ENSG00000004939|ENST00000262418|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.3531494140625	2	582.384783	1162.75501	0.43844	0.00025534	-1.6704	-0.00097282	-1.232	-0.00071748	582.3835489538708	102.35	0.13194	102.35	102.24	102.37	-0.0054474					4	2	2	0	0	0	0.03519	1	13030	13030		15.642	3.435	1	20175			44136	752	30502	30553	49594	49594					0.1801453883610975
LLRALLLPS	9	Unmodified	_LLRALLLPS_					0	0	0			REV__ENSG00000103168|ENST00000566732|TAF1C	REV__ENSG00000103168|ENST00000566732|TAF1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.33447265625	2	498.334227	994.653902	2.1217	0.0010573	-2.3014	-0.0011469	-0.17974	-8.9568E-05	498.3330237962994	74.302	0.59526	74.302	73.955	74.551	0					47	13	4	0	0	0	0.33245	1	9108	9108		71.296	5.4925	1	5410200	+		44137	21361	30503	30554	49595	49595					0.15636087133384535
LLRAQGCP	8	Unmodified	_LLRAQGCP_					0	0	0		ENST00000369295.3_1_10:115805063-115805390:+|nuORF	ENST00000369295.3_1_10:115805063-115805390:+|nuORF	ENST00000369295.3_1_10:115805063-115805390:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2373352050781	2	429.23673	856.458907	-0.814	-0.0003494	1.1981	0.00051428	0.38413	0.00016488	429.2378232885026	29.938	0.24921	30.016	29.842	30.091	0.078344					6	5	2	0	0	0	0.027866	1	1806	1806		14.664	0	1	93532			44138	12919	30504	30555	49596	49596					0.02493593056726695
LLRAQLGIL	9	Unmodified	_LLRAQLGIL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.31781005859375	2	498.831852	995.649151	0.030127	1.5028E-05	0.69074	0.00034456	0.72086	0.00035959	498.83189669643525	79.313	0.53252	79.331	79.11	79.643	0.018677					16	12	2	0	0	0	0.024354	1	9737	9737		57.811	17.239	1	75811			44139	5353	30505	30556	49597	49597					0.15115202990614307
LLRAQLGIL	9	Unmodified	_LLRAQLGIL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.831852	995.649151	0.41931	0.00020917	-0.20821	-0.00010386	0.2111	0.0001053	498.83167561623765	79.245	0.58296	78.998	78.695	79.278	-0.24651	-0.11715	-0.00028122	NaN	38.806	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431590			44140	5353	30505	30556							0.15115202990614307
LLRAQLGIL	9	Unmodified	_LLRAQLGIL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.831852	995.649151	0.20397	0.00010175	0.15233	7.5989E-05	0.3563	0.00017774	498.8317717341419	79.194	0.62161	78.975	78.706	79.327	-0.21923	-0.14095	7.8473E-05	NaN	38.806	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397720			44141	5353	30505	30556							0.15115202990614307
LLRAQLGIL	9	Unmodified	_LLRAQLGIL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.831852	995.649151	-0.11453	-5.7134E-05	0.39319	0.00019614	0.27866	0.000139	498.83186838662544	79.11	0.62831	78.959	78.65	79.278	-0.15051	-0.15624	0.00031877	NaN	38.806	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367820			44142	5353	30505	30556							0.15115202990614307
LLRARERYDSL	11	Unmodified	_LLRARERYDSL_					0	0	0			REV__ENSG00000146216|ENST00000259750|TTBK1	REV__ENSG00000146216|ENST00000259750|TTBK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.79522705078125	3	464.596642	1390.7681	-0.0012211	-5.6731E-07	2.9346	0.0013634	2.9333	0.0013628	464.5979138193193	55.729	0.55631	55.573	55.331	55.887	-0.15601					25	14	2	0	0	0	0.024851	1	6113	6113		14.086	7.7651	1	475570	+		44143	24469	30506	30557	49598	49598					0.08834325157522471
LLRASLIVAE	10	Unmodified	_LLRASLIVAE_					0	0	0			REV__ENST00000573685.5_1_16:68573279-68591907:+|nuORF	REV__ENST00000573685.5_1_16:68573279-68591907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2575073242188	2	542.839874	1083.66519	-0.58229	-0.00031609	0.0026463	1.4365E-06	-0.57964	-0.00031465	542.8397493211553	47.688	0.80632	47.59	47.16	47.966	-0.097553					40	21	2	0	0	0	0.03519	1	4632	4632		32.812	0	1	558000	+		44144	35439	30507	30558	49599	49599					0.1267086443685912
LLRCGKGTTY	10	Unmodified	_LLRCGKGTTY_					0	0	0		nc|ENSG00000100299|P15289-2|ARSA;nc|ENSG00000100299|P15289|ARSA;ENSG00000100299|ENST00000216124|ARSA	nc|ENSG00000100299|P15289-2|ARSA	nc|ENSG00000100299|P15289-2|ARSA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2295532226562	2	556.300059	1110.58556	-0.91741	-0.00051036	-2.5552	-0.0014215	-3.4727	-0.0019318	556.2982616182508	43.269	0.25338	43.043	42.951	43.205	-0.22597					9	6	2	0	0	0	0.03519	1	3959	3959		82.241	5.4664	1	82922			44145	2172	30508	30559	49600	49600					0.0346947449122581
LLRCGLGIL	9	Unmodified	_LLRCGLGIL_					0	0	0		ENST00000331343.11_1_21:46686342-46686516:-|nuORF	ENST00000331343.11_1_21:46686342-46686516:-|nuORF	ENST00000331343.11_1_21:46686342-46686516:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.298095703125	2	479.29933	956.584108	-0.20541	-9.8454E-05	-2.9738	-0.0014253	-3.1792	-0.0015238	479.29772652342143	70.058	1.3879	70.07	69.627	71.015	0.012413					72	35	3	0	0	0	0.52323	1	8413	8413		57.811	3.0466	1	4766400			44146	12342	30509	30560	49601	49601					0.10407885193103539
LLRCVTSK	8	Unmodified	_LLRCVTSK_					0	0	0			REV__nc|ENSG00000172409|Q92989-2|CLP1	REV__nc|ENSG00000172409|Q92989-2|CLP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2718505859375	2	460.273312	918.532072	-0.06573	-3.0254E-05	-2.7891	-0.0012837	-2.8548	-0.001314	460.272060142532	42.904	1.2878	42.904	42.187	43.475	0					66	35	2	0	0	0	0.68535	2	3977	3977;3987		68.485	0	1	3564800	+		44147	26669	30510	30561	49602;49603	49602					0.06954721779356987
LLRDHLAL	8	Unmodified	_LLRDHLAL_					0	0	0		ENSG00000248712|ENST00000503566|CCDC153;ENST00000375140.7_1_11:119064239-119066706:-|nuORF	ENSG00000248712|ENST00000503566|CCDC153;ENST00000375140.7_1_11:119064239-119066706:-|nuORF	ENST00000375140.7_1_11:119064239-119066706:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.7924499511719	2	475.792727	949.5709	0.70691	0.00033634	-0.25496	-0.00012131	0.45195	0.00021503	475.7923469658226	56.322	1.434	56.322	55.715	57.148	0					83	40	3	0	0	0	0.85409	1	6280	6280		54.765	0	1	2458000			44148	10834;13151	30511	30562	49604	49604					0.09409770405352447
LLREFNEI	8	Unmodified	_LLREFNEI_					0	0	0			REV__ENSG00000140297|ENST00000396065|GCNT3	REV__ENSG00000140297|ENST00000396065|GCNT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.3001708984375	2	517.287474	1032.5604	-0.89348	-0.00046218	-1.7224	-0.00089099	-2.6159	-0.0013532	517.2867708626245	93.609	0.29807	93.615	93.391	93.689	0.0059814					9	6	2	0	0	0	0.027866	1	11785	11785		57.811	0	1	25666	+		44149	24000	30512	30563	49605	49605					0.04541742960282136
LLREKSPD	8	Unmodified	_LLREKSPD_					0	0	0			REV__ENSG00000173581|ENST00000586790|CCDC106	REV__ENSG00000173581|ENST00000586790|CCDC106	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3004455566406	2	479.271824	956.529095	-0.23797	-0.00011405	0.76341	0.00036588	0.52544	0.00025183	479.2716703678051	37.461	0.6713	37.398	37.091	37.762	-0.063385					28	18	2	0	0	0	0.027866	1	3085	3085		79.451	26.1	1	636370	+		44150	26787	30513	30564	49606	49606					0.049091699261907706
LLREKSPD	8	Unmodified	_LLREKSPD_					0	0	0			REV__ENSG00000173581|ENST00000586790|CCDC106	REV__ENSG00000173581|ENST00000586790|CCDC106	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.271824	956.529095	1.8253	0.0008748	-2.591	-0.0012418	-0.76569	-0.00036697	479.2701460313798	37.06	0.50471	37.06	36.764	37.269	0	-0.16903	-0.0014704	NaN	79.451	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186320	+		44151	26787	30513	30564							0.049091699261907706
LLREPQSVI	9	Unmodified	_LLREPQSVI_					0	0	0			REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.8154907226562	2	527.816399	1053.61824	-1.6028	-0.00084597	1.5973	0.00084307	-0.0054973	-2.9016E-06	527.8166991341571	43.693	1.0818	43.693	43.404	44.485	0					78	30	5	0	0	0	0.35646	1	4126	4126		68.787	1.2932	1	4799400	+		44152	25325	30514	30565	49607	49607					0.09358004885712035
LLREYQEEI	9	Unmodified	_LLREYQEEI_					0	0	0		ENSG00000117245|ENST00000400463|KIF17;nc|ENSG00000117245|Q9P2E2|KIF17	ENSG00000117245|ENST00000400463|KIF17	ENSG00000117245|ENST00000400463|KIF17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	596.8143310546875	2	596.814053	1191.61355	-0.82009	-0.00048944	0.82574	0.00049281	0.0056569	3.3761E-06	596.8144809670995	55.328	0.88951	55.177	54.894	55.784	-0.15036					71	24	4	0	0	0	0.29609	1	6087	6087		76.17	7.3235	1	4694500			44153	3618	30515	30566	49608	49608					0.02541075952308347
LLRFIAGVD	9	Unmodified	_LLRFIAGVD_					0	0	0		ENST00000529210.1_1_11:14520513-14521387:-|nuORF	ENST00000529210.1_1_11:14520513-14521387:-|nuORF	ENST00000529210.1_1_11:14520513-14521387:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7841796875	2	502.300384	1002.58622	0.70007	0.00035164	-2.1324	-0.0010711	-1.4323	-0.00071946	502.2984980881807	72.147	0.5882	72.156	72.023	72.611	0.0097733					20	14	2	0	0	0	0.024436	1	8696	8696		30.504	1.3541	1	150290			44154	16204	30516	30567	49609	49609					0.08502637202570895
LLRFVSPVT	9	Unmodified	_LLRFVSPVT_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7606201171875	2	516.316035	1030.61752	0.50077	0.00025855	1.3594	0.00070186	1.8601	0.00096041	516.316619052856	70.921	0.70482	70.921	70.44	71.145	0					26	16	2	0	0	0	0.024495	1	8548	8548		34.173	11.13	1	224690			44155	8193	30517	30568	49610	49610					0.10343210236646883
LLRGAQELI	9	Unmodified	_LLRGAQELI_					0	0	0		ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.810302734375	2	506.811116	1011.60768	-0.12925	-6.5504E-05	0.10913	5.5306E-05	-0.020121	-1.0198E-05	506.81103839753365	64.288	0.99091	64.096	63.757	64.748	-0.19243					49	24	4	0	0	0	0.11092	1	7297	7297		108.09	1.6723	1	2467500			44156	2664	30518	30569	49611	49611					0.10234022231293238
LLRGERPTRI	10	Unmodified	_LLRGERPTRI_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8717041015625	2	605.872571	1209.73059	-0.27427	-0.00016617	-0.55664	-0.00033725	-0.83091	-0.00050343	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	1.0122	1	12237	12237		44.377	15.228	1	990980			44157	6126	30519	30570	49612	49612					0.13411278682542616
LLRGIAAGLI	10	Unmodified	_LLRGIAAGLI_					0	0	0			REV__nc|ENSG00000186510|P51800-3|CLCNKA	REV__nc|ENSG00000186510|P51800-3|CLCNKA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.3169250488281	2	498.831852	995.649151	-0.048446	-2.4166E-05	0.20674	0.00010313	0.15829	7.896E-05	498.8318754182563	79.314	0.5806	79.314	79.035	79.616	0					19	13	2	0	0	0	0.03519	1	9821	9821		53.351	12.779	1	97407	+		44158	27864	30520	30571	49613	49613					0.15115202990614307
LLRGKPVR	8	Unmodified	_LLRGKPVR_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.8158264160156	2	469.816536	937.618519	-1.3131	-0.00061691	0.64427	0.00030269	-0.66881	-0.00031422	469.8166873020197	44.239	0.75717	44.02	43.749	44.506	-0.21938					44	20	3	0	0	0	0.88442	1	4093	4093		52.299	7.7681	1	2059800	+		44159	28722	30521	30572	49614	49614					0.14721469396215525
LLRGKPVR	8	Unmodified	_LLRGKPVR_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.816536	937.618519	-0.62094	-0.00029173	-0.33949	-0.0001595	-0.96044	-0.00045123	469.8162481658019	44.048	0.68581	43.943	43.701	44.387	-0.10468	-0.038266	-0.00044366	NaN	52.299	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1108100	+		44160	28722	30521	30572							0.14721469396215525
LLRGKPVR	8	Unmodified	_LLRGKPVR_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.816536	937.618519	-0.81515	-0.00038297	-0.02742	-1.2882E-05	-0.84257	-0.00039585	469.8163833162965	44.226	0.76461	43.982	43.711	44.476	-0.2444	4.0196E-05	-0.00015042	NaN	52.299	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1397500	+		44161	28722	30521	30572							0.14721469396215525
LLRGKPVR	8	Unmodified	_LLRGKPVR_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	469.816536	937.618519	-1.3131	-0.00061691	0.64427	0.00030269	-0.66881	-0.00031422	469.8166873020197	44.239	0.75717	44.02	43.749	44.506	-0.21938	0.038225	0.00048072	NaN	52.299	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2059800	+		44162	28722	30521	30572							0.14721469396215525
LLRGRSRFG	9	Unmodified	_LLRGRSRFG_					0	0	0		ENST00000257860.8_1_12:49688178-49688403:+|nuORF	ENST00000257860.8_1_12:49688178-49688403:+|nuORF	ENST00000257860.8_1_12:49688178-49688403:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.289794921875	2	531.319974	1060.6254	-0.23744	-0.00012616	-2.5015	-0.0013291	-2.7389	-0.0014552	531.3170475943166	55.356	0.20113	55.144	54.97	55.171	-0.21233					8	5	2	0	0	0	0.024506	1	5907	5907		16.473	0	1	114600			44163	11409	30522	30573	49615	49615					0.09750782276796599
LLRGVDSLL	9	Unmodified	_LLRGVDSLL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30615234375	2	493.305667	984.596781	0.031035	1.531E-05	-0.50497	-0.00024911	-0.47394	-0.0002338	493.30540554648553	56.119	0.99241	56.119	55.786	56.778	0					73	27	5	0	0	0	0.20967	1	6262	6262		87.754	2.5935	1	10044000			44164	1220	30523	30574	49616	49616					0.10386619857001733
LLRHVGAL	8	Unmodified	_LLRHVGAL_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.75262451171875	2	439.782162	877.549771	-0.03331	-1.4649E-05	0.032587	1.4331E-05	-0.00072331	-3.181E-07	439.78204790594634	23.596	0.63947	23.394	23.107	23.747	-0.20193					20	14	2	0	0	0	0.027866	1	925	925		20.482	0	1	119630	+		44165	23480	30524	30575	49617	49617					0.1060980509652154
LLRIQDLL	8	Unmodified	_LLRIQDLL_					0	0	0		EVC2|p.S990R|1|0.14|ENSG00000173040|chr4:5584710-5584710|G/C|missense_variant	EVC2|p.S990R|1|0.14|ENSG00000173040|chr4:5584710-5584710|G/C|missense_variant	EVC2|p.S990R|1|0.14|ENSG00000173040|chr4:5584710-5584710|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.28759765625	2	492.316035	982.617516	0.18086	8.904E-05	-0.2573	-0.00012667	-0.076442	-3.7633E-05	492.315589292512	75.956	0.52335	75.968	75.681	76.205	0.011635					21	13	3	0	0	0	0.027866	1	9271	9271		68.485	0	1	143470			44166	17625	30525	30576	49618	49618					0.12551210236654242
LLRIRAIHG	9	Unmodified	_LLRIRAIHG_					0	0	0			REV__DCAF12L1|p.P134R|1|0.2|ENSG00000198889|chrX:126552208-126552208|G/C|missense_variant	REV__DCAF12L1|p.P134R|1|0.2|ENSG00000198889|chrX:126552208-126552208|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.8268432617188	2	524.840542	1047.66653	-0.031403	-1.6482E-05	-0.067803	-3.5586E-05	-0.099206	-5.2068E-05	524.8406662164236	98.261	0.1903	98.096	97.967	98.158	-0.1652					6	4	2	0	0	0	0.024487	1	12161	12161		40.573	8.6178	1	32938	+		44167	19652	30526	30577	49619	49619					0.1446054331624964
LLRKEEEW	8	Unmodified	_LLRKEEEW_					0	0	0		ENSG00000176155|ENST00000694881|CCDC57;nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;CCDC57|p.R22K|1|0.33|ENSG00000176155|chr17:82201880-82201880|C/T|missense_variant	ENSG00000176155|ENST00000694881|CCDC57	ENSG00000176155|ENST00000694881|CCDC57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2584228515625	2	551.798206	1101.58186	-0.052187	-2.8797E-05	0.74751	0.00041247	0.69532	0.00038368	551.7965449394917	64.035	0.20439	63.842	63.717	63.921	-0.19243					7	4	2	0	0	0	0.027866	1	7249	7249		29.15	6.1071	1	26594			44168	8616	30527	30578	49620	49620					0.03513127989003806
LLRKLLTIWKF	11	Unmodified	_LLRKLLTIWKF_					0	0	0		ENST00000375344.7_1_9:97222409-97222715:+|nuORF	ENST00000375344.7_1_9:97222409-97222715:+|nuORF	ENST00000375344.7_1_9:97222409-97222715:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77764892578125	3	477.646385	1429.91733	-0.05892	-2.8143E-05	-0.25736	-0.00012293	-0.31628	-0.00015107	477.6476987864071	27.307	0.39727	27.294	27.067	27.464	-0.012983					11	10	2	0	0	0	0.024888	1	1489	1489		3.2113	0	1	44685			44169	13158	30528	30579	49621	49621					0.2195650251819643
LLRKLQRIA	9	Unmodified	_LLRKLQRIA_					0	0	0			REV__ENSG00000015532|ENST00000017003|XYLT2	REV__ENSG00000015532|ENST00000017003|XYLT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7691040039062	2	555.877125	1109.7397	-0.63682	-0.000354	-1.3538	-0.00075253	-1.9906	-0.0011065	555.8747258903549	38.124	0.15848	37.945	37.844	38.002	-0.17929					7	4	2	0	0	0	0.024506	1	3112	3112		23.042	5.6775	1	132560	+		44170	19970	30529	30580	49622	49622					0.18921672038891302
LLRKSLDP	8	Unmodified	_LLRKSLDP_					0	0	0		ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2928771972656	2	471.292559	940.570566	0.3653	0.00017216	-0.44603	-0.00021021	-0.080726	-3.8046E-05	471.29235913514	50.39	1.4067	50.238	49.817	51.224	-0.1512					111	40	4	0	0	0	0.68164	1	5277	5277		68.787	0	1	27149000			44171	13684	30530	30581	49623	49623					0.09790350685523208
LLRLEILA	8	Unmodified	_LLRLEILA_					0	0	0		ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	ENST00000433971.5_1_3:188850369-188850438:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.75494384765625	2	470.813128	939.611703	-0.074512	-3.5081E-05	-0.73011	-0.00034375	-0.80462	-0.00037883	470.81247052853274	37.638	0.21567	37.638	37.486	37.702	0					8	5	2	0	0	0	0.027866	1	3092	3092		19.36	0	1	71551			44172	14236	30531	30582	49624	49624					0.13948111724971568
LLRLFLFIVV	10	Unmodified	_LLRLFLFIVV_					0	0	0			REV__PTCH1|p.G759R|1|0.41|ENSG00000185920|chr9:95467401-95467401|C/G|missense_variant	REV__PTCH1|p.G759R|1|0.41|ENSG00000185920|chr9:95467401-95467401|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.5633239746094	3	411.60916	1231.80565	0.55875	0.00022999	2.1195	0.00087242	2.6783	0.0011024	411.60975044012514	32.628	0.20331	32.435	32.293	32.496	-0.19261					7	4	2	0	0	0	0.03519	1	2253	2253		4.3388	0	1	48858	+		44173	37417	30532	30583	49625	49625					0.19902068161036368
LLRLLCYC	8	Unmodified	_LLRLLCYC_					0	0	0		nc|ENSG00000134326|Q5EBM0-2|CMPK2;nc|ENSG00000134326|Q5EBM0-3|CMPK2;nc|ENSG00000134326|Q5EBM0-4|CMPK2;ENSG00000134326|ENST00000256722|CMPK2	nc|ENSG00000134326|Q5EBM0-2|CMPK2	nc|ENSG00000134326|Q5EBM0-2|CMPK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7899475097656	2	498.772091	995.529629	-0.2722	-0.00013576	-0.7767	-0.0003874	-1.0489	-0.00052316	498.7722430732471	70.328	0.20676	70.056	69.869	70.076	-0.27185					5	4	2	0	0	0	0.027866	1	8180	8180		46.766	16.925	1	73459			44174	4785	30533	30584	49626	49626					0.03168550050020258
LLRLLQPERAT	11	Unmodified	_LLRLLQPERAT_					0	0	0			REV__ENSG00000180878|ENST00000316375|C11orf42	REV__ENSG00000180878|ENST00000316375|C11orf42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.24249267578125	3	437.269866	1308.78777	0.1317	5.7588E-05	-4.3482	-0.0019013	-4.2165	-0.0018438	437.6022129006989	53.741	0.65649	53.543	53.201	53.857	-0.19739					47	19	4	0	0	0	0.02477	1	5605	5605		22.562	13.35	1	459630	+		44175	27369	30534	30585	49627	49627					0.1457270116827658
LLRLLQPERAT	11	Unmodified	_LLRLLQPERAT_					0	0	0			REV__ENSG00000180878|ENST00000316375|C11orf42	REV__ENSG00000180878|ENST00000316375|C11orf42	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	437.269866	1308.78777	0.19598	8.5696E-05	-3.5329	-0.0015448	-3.3369	-0.0014591	437.26883428528083	53.967	1.0153	53.967	53.509	54.524	0	0.2187	0.0002169	NaN	17.167	72	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753630	+		44176	27369	30534	30585							0.1457270116827658
LLRLLQPERAT	11	Unmodified	_LLRLLQPERAT_					0	0	0			REV__ENSG00000180878|ENST00000316375|C11orf42	REV__ENSG00000180878|ENST00000316375|C11orf42	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	437.269866	1308.78777	0.074496	3.2575E-05	-3.6806	-0.0016094	-3.6061	-0.0015768	437.2685560160478	54.046	1.1351	53.899	53.31	54.445	-0.14723	0.15016	2.3166E-05	NaN	17.167	65	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	799650	+		44177	27369	30534	30585							0.1457270116827658
LLRLLQPERAT	11	Unmodified	_LLRLLQPERAT_					0	0	0			REV__ENSG00000180878|ENST00000316375|C11orf42	REV__ENSG00000180878|ENST00000316375|C11orf42	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	437.269866	1308.78777	0.23009	0.00010061	-3.6615	-0.0016011	-3.4314	-0.0015004	437.2686966014172	53.723	0.80688	53.819	53.518	54.325	0.095669	0.070033	4.8236E-05	NaN	17.167	71	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	877810	+		44178	27369	30534	30585							0.1457270116827658
LLRLLQPERAT	11	Unmodified	_LLRLLQPERAT_					0	0	0			REV__ENSG00000180878|ENST00000316375|C11orf42	REV__ENSG00000180878|ENST00000316375|C11orf42	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	437.269866	1308.78777	-0.94763	-0.00041437	-3.066	-0.0013407	-4.0136	-0.001755	437.26848821710405	53.794	0.72572	53.658	53.171	53.897	-0.13616	-0.090755	0.00082941	NaN	17.167	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436310	+		44179	27369	30534	30585							0.1457270116827658
LLRLLQPERAT	11	Unmodified	_LLRLLQPERAT_					0	0	0			REV__ENSG00000180878|ENST00000316375|C11orf42	REV__ENSG00000180878|ENST00000316375|C11orf42	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	437.269866	1308.78777	-0.13828	-6.0465E-05	-4.2927	-0.0018771	-4.431	-0.0019375	437.2681499767463	53.851	0.93583	53.606	53.199	54.135	-0.2453	-0.14282	-0.00077979	NaN	17.167	60	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417460	+		44180	27369	30534	30585							0.1457270116827658
LLRLPGLIL	9	Unmodified	_LLRLPGLIL_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3185119628906	2	504.35242	1006.69029	-1.1377	-0.00057379	1.2864	0.00064878	0.14869	7.4992E-05	504.3529282368204	80.249	0.54683	80.097	79.924	80.471	-0.15168					16	12	2	0	0	0	0.024487	1	9918	9918		31.955	1.4512	1	69789			44181	9832	30535	30586	49628	49628					0.18720964030080722
LLRLPGLIL	9	Unmodified	_LLRLPGLIL_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.35242	1006.69029	-0.48009	-0.00024213	0.34601	0.00017451	-0.13408	-6.7624E-05	504.35250467367916	80.026	0.41963	80.026	79.911	80.331	0	-0.052382	-0.00062289	NaN	31.955	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68203			44182	9832	30535	30586							0.18720964030080722
LLRLPGLIL	9	Unmodified	_LLRLPGLIL_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.35242	1006.69029	-0.55429	-0.00027956	2.7333	0.0013785	2.179	0.001099	504.35288562262303	80.09	0.54796	80.112	79.98	80.528	0.021446	0.033352	0.0017851	NaN	31.955	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59736			44183	9832	30535	30586							0.18720964030080722
LLRLPIDV	8	Unmodified	_LLRLPIDV_					0	0	0			REV__ENSG00000159217|ENST00000290341|IGF2BP1	REV__ENSG00000159217|ENST00000290341|IGF2BP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.7515869140625	2	469.805303	937.596052	0.33318	0.00015653	-0.40409	-0.00018984	-0.070902	-3.331E-05	469.80492828503156	54.387	0.69009	54.238	53.952	54.642	-0.1494					38	19	3	0	0	0	0.027866	1	5908	5908		88.643	0	1	1088100	+		44184	25241	30536	30587	49629	49629					0.12475825207934577
LLRLPIDV	8	Unmodified	_LLRLPIDV_					0	0	0			REV__ENSG00000159217|ENST00000290341|IGF2BP1	REV__ENSG00000159217|ENST00000290341|IGF2BP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7510986328125	2	469.805303	937.596052	1.1768	0.00055287	-1.2234	-0.00057478	-0.046643	-2.1913E-05	469.8045484398885	54.143	0.58457	54.241	53.973	54.558	0.098015					36	16	3	0	0	0	0.027866	1	5808	5808		88.643	0	1	1358200	+		44185	25241	30536	30587	49630	49630					0.12475825207934577
LLRLPVLLL	9	Unmodified	_LLRLPVLLL_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7896728515625	2	525.375895	1048.73724	0.43449	0.00022827	4.1687	0.0021902	4.6032	0.0024184	526.3806640963717	99.499	0.62348	99.364	99.054	99.677	-0.13526					35	15	3	0	0	0	0.024541	1	12354	12354		18.324	5.3652	1	63345			44186	16292	30537	30588	49631	49631					0.21481823581211756
LLRMAIQQ	8	Unmodified	_LLRMAIQQ_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	BICD2-IPPK|1|fusion;nc|ENSG00000151746|Q96G01-4|BICD1	BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.22711181640625	2	486.786587	971.558621	-0.49567	-0.00024129	-1.9467	-0.00094763	-2.4424	-0.0011889	486.78553850964187	54.76	0.37794	54.613	54.459	54.837	-0.14609					22	9	3	0	0	0	0.027866	1	5833	5833		42.474	18.272	1	561070			44187	185;6227	30538	30589	49632	49632					0.0717041067067612
LLRNGSNFQG	10	Unmodified	_LLRNGSNFQG_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.74853515625	2	553.291079	1104.56761	-0.18153	-0.00010044	0.66652	0.00036878	0.48499	0.00026834	553.7952365526614	43.111	0.75017	42.999	42.538	43.288	-0.11253					24	19	2	0	0	0	0.03519	1	3949	3949		32.812	0	1	436450	+		44188	36458	30539	30590	49633	49633					0.019504755606931212
LLRNQIVTDP	10	Unmodified	_LLRNQIVTDP_					0	0	0		ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.8377685546875	2	584.837862	1167.66117	-1.3256	-0.00077527	0.84721	0.00049548	-0.4784	-0.00027979	584.8383370442375	53.001	0.77698	52.853	52.569	53.346	-0.14723					67	20	5	0	0	0	0.74632	1	5692	5692		64.207	11.118	1	6449700			44189	11092	30540	30591	49634	49634					0.08404774943142002
LLRNVSPVQ	9	Unmodified	_LLRNVSPVQ_					0	0	0		ENST00000528986.1_1_11:121962353-121971085:-|nuORF	ENST00000528986.1_1_11:121962353-121971085:-|nuORF	ENST00000528986.1_1_11:121962353-121971085:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3079223632812	2	513.308741	1024.60293	-0.81778	-0.00041977	0.034693	1.7808E-05	-0.78309	-0.00040197	513.3087525472763	54.497	1.1779	54.497	54.249	55.427	0					90	33	5	0	0	0	0.12602	1	5955	5955		104.75	0	1	7591300			44190	16197	30541	30592	49635	49635					0.09161138088529697
LLRPALALI	9	Unmodified	_LLRPALALI_					0	0	0			REV__ENST00000482974.1_1_3:50614485-50617422:+|nuORF	REV__ENST00000482974.1_1_3:50614485-50617422:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.3369445800781	2	490.33677	978.658987	1.2361	0.00060612	-1.3661	-0.00066985	-0.12997	-6.3728E-05	490.33599853639276	82.584	2.4277	82.474	81.881	84.309	-0.11006					90	56	2	0	0	0	0.78069	1	10243	10243		40.573	0	1	861240	+		44191	22137	30542	30593	49636	49636					0.16880390995981998
LLRPCPSL	8	Unmodified	_LLRPCPSL_					0	0	0			REV__ENST00000480367.1_1_7:154677243-154681360:+|nuORF	REV__ENST00000480367.1_1_7:154677243-154681360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.284912109375	2	449.762581	897.510608	-0.19921	-8.9599E-05	-3.7928	-0.0017058	-3.992	-0.0017954	449.7607285442801	34.593	0.47098	34.589	34.336	34.807	-0.0045624					21	11	2	0	0	0	0.027866	1	2603	2603		65.803	19.851	1	614660	+		44192	33421	30543	30594	49637	49637					0.057753367506279574
LLRPEHLQT	9	Unmodified	_LLRPEHLQT_					0	0	0			REV__ENST00000306336.5_2_2:85835574-85835748:-|nuORF	REV__ENST00000306336.5_2_2:85835574-85835748:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7484130859375	2	553.819473	1105.62439	-1.0026	-0.00055527	0.31346	0.0001736	-0.68916	-0.00038167	553.8193871432544	43.6	0.45805	43.381	43.176	43.634	-0.21938					33	12	4	0	0	0	0.024484	1	3985	3985		37.812	17.815	1	1384500	+		44193	30122	30544	30595	49638	49638					0.07580523117235316
LLRPHFPSF	9	Unmodified	_LLRPHFPSF_					0	0	0			REV__ENST00000396081.5_1_7:35734290-35734692:-|nuORF	REV__ENST00000396081.5_1_7:35734290-35734692:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3136596679688	2	557.313826	1112.6131	-0.84977	-0.00047359	0.70553	0.0003932	-0.14424	-8.0384E-05	557.3141584542666	55.285	1.0298	55.139	54.837	55.867	-0.14609					55	28	2	0	0	0	0.50848	1	5924	5924		58.782	4.0056	1	2791000	+		44194	31723	30545	30596	49639	49639					0.061297458137460126
LLRPLGPSL	9	Unmodified	_LLRPLGPSL_					0	0	0			REV__nc|ENSG00000027075|C0HM02|PRKCH	REV__nc|ENSG00000027075|C0HM02|PRKCH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.3114013671875	2	483.310752	964.606951	-0.25527	-0.00012338	0.77896	0.00037648	0.52368	0.0002531	483.3108401721876	67.045	0.93794	67.045	66.63	67.568	0					68	22	4	0	0	0	0.62163	1	8010	8010		51.335	8.9393	1	2132700	+		44195	30497	30546	30597	49640	49640					0.12323227582214713
LLRPPASL	8	Unmodified	_LLRPPASL_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.7765197753906	2	433.776545	865.538538	-0.48511	-0.00021043	0.6594	0.00028603	0.17429	7.5602E-05	433.77670826378187	29.509	1.0213	29.336	28.981	30.002	-0.17258					55	23	3	0	0	0	0.59392	1	1794	1794		76.847	5.5509	1	2297100			44196	2562	30547	30598	49641	49641					0.10038983002368695
LLRPRHQQ	8	Unmodified	_LLRPRHQQ_					0	0	0			REV__ENST00000460297.1_1_16:448229-448523:+|nuORF	REV__ENST00000460297.1_1_16:448229-448523:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3045654296875	2	524.312149	1046.60975	0.13989	7.3344E-05	2.4503	0.0012847	2.5902	0.0013581	524.313499930905	69.903	0.37357	69.681	69.474	69.847	-0.22245					15	8	2	0	0	0	0.027866	1	8111	8111		25.45	0	1	125460	+		44197	32843	30548	30599	49642	49642					0.08830495759752921
LLRPRSHKS	9	Unmodified	_LLRPRSHKS_					0	0	0		nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	MSMS	OPSCC_39_ClassI_Rep-1	1	547.33251953125	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.08	1	101.08	100.58	101.58	0								0	0	0	0.64798	1	12939	12939		31.53	3.2755	1				44198	1132	30549	30600	49643	49643					0.10899051448268438
LLRPSNLSI	9	Unmodified	_LLRPSNLSI_					0	0	0		ENST00000412466.1_1_7:66764334-66767385:-|nuORF	ENST00000412466.1_1_7:66764334-66767385:-|nuORF	ENST00000412466.1_1_7:66764334-66767385:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.8110046386719	2	506.811116	1011.60768	-0.38019	-0.00019268	0.31105	0.00015764	-0.069144	-3.5043E-05	506.8111061534803	45.36	1.5001	45.26	44.828	46.328	-0.099449					90	41	5	0	0	0	0.033448	4	4310	4286;4297;4310;4322		138.83	27.426	1	5665300			44199	13819	30550	30601	49644;49645;49646;49647	49646					0.10234022231293238
LLRPSNLSI	9	Unmodified	_LLRPSNLSI_					0	0	0		ENST00000412466.1_1_7:66764334-66767385:-|nuORF	ENST00000412466.1_1_7:66764334-66767385:-|nuORF	ENST00000412466.1_1_7:66764334-66767385:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.8109130859375	2	506.811116	1011.60768	-0.19793	-0.00010031	-0.049773	-2.5225E-05	-0.2477	-0.00012554	506.81094579314833	45.551	1.7948	45.298	44.748	46.543	-0.25252					97	38	5	0	0	0	0.072054	3	4302	4302;4314;4333		120.62	15.874	1	5147800			44200	13819	30550	30601	49648;49649;49650	49648					0.10234022231293238
LLRPSNLSI	9	Unmodified	_LLRPSNLSI_					0	0	0		ENST00000412466.1_1_7:66764334-66767385:-|nuORF	ENST00000412466.1_1_7:66764334-66767385:-|nuORF	ENST00000412466.1_1_7:66764334-66767385:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.8111572265625	2	506.811116	1011.60768	-0.70481	-0.00035721	0.57434	0.00029108	-0.13047	-6.6125E-05	506.81122858579016	45.483	1.5737	45.272	44.754	46.327	-0.21109					86	41	4	0	0	0	0.039744	4	4301	4290;4301;4315;4327		133.81	29.066	1	5689100			44201	13819	30550	30601	49651;49652;49653;49654	49652					0.10234022231293238
LLRQKEIVI	9	Unmodified	_LLRQKEIVI_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7685546875	2	556.363516	1110.71248	-0.8393	-0.00046696	-4.4255	-0.0024622	-5.2648	-0.0029292	556.3609058804785	38.155	0.09325	37.933	37.866	37.959	-0.22148					4	2	2	0	0	0	0.024457	1	3117	3117		37.159	10.363	1	77355			44202	3152	30551	30602	49655	49655					0.16155143707828756
LLRQNVERC	9	Unmodified	_LLRQNVERC_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.80712890625	2	565.808582	1129.60261	0.25355	0.00014346	-3.4973	-0.0019788	-3.2437	-0.0018353	565.8065729795808	32.833	0.8432	32.641	32.335	33.178	-0.19261					48	20	3	0	0	0	0.96906	1	2286	2286		26.693	0.62953	1	2499800	+		44203	28398	30552	30603	49656	49656					0.042993950970185324
LLRQNVIV	8	Unmodified	_LLRQNVIV_					0	0	0		ENST00000407426.7_1_2:29147850-29148012:+|nuORF	ENST00000407426.7_1_2:29147850-29148012:+|nuORF	ENST00000407426.7_1_2:29147850-29148012:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26348876953125	2	477.808377	953.6022	-0.7783	-0.00037188	0.35157	0.00016798	-0.42673	-0.0002039	477.80848565732776	39.164	1.0337	39.188	38.807	39.84	0.023727					57	28	3	0	0	0	0.027866	1	3270	3270		20.482	0	1	821170			44204	13748	30553	30604	49657	49657					0.12354343439460536
LLRQPGPS	8	Unmodified	_LLRQPGPS_					0	0	0			REV__FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	REV__FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7802734375	2	434.255977	866.497401	-0.56218	-0.00024413	1.1413	0.00049564	0.57917	0.00025151	434.2563466128885	41.078	0.83967	40.847	40.554	41.394	-0.23029					37	21	3	0	0	0	0.027866	1	3563	3563		24.203	6.8378	1	217620	+		44205	36024	30554	30605	49658	49658					0.05881221962908967
LLRRCLVD	8	Unmodified	_LLRRCLVD_					0	0	0			REV__ENSG00000166685|ENST00000299886|COG1	REV__ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3152160644531	2	494.292037	986.56952	-0.94264	-0.00046594	-4.2959	-0.0021234	-5.2386	-0.0025894	494.2898926423179	80.757	0.35985	80.78	80.53	80.89	0.023903					11	8	2	0	0	0	0.027866	1	9972	9972		60.294	23.135	1	231780	+		44206	26044	30555	30606	49659	49659					0.07569813044949569
LLRRDLGVG	9	Unmodified	_LLRRDLGVG_					0	0	0		ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.3239440917969	2	499.808908	997.603263	0.03215	1.6069E-05	-3.8593	-0.0019289	-3.8272	-0.0019129	500.3079729340917	63.728	0.57375	63.477	63.228	63.802	-0.25141					42	15	4	0	0	0	0.024205	1	7482	7482		53.351	15.54	1	1626900			44207	3165	30556	30607	49660	49660					0.1043655780838435
LLRRDLGVG	9	Unmodified	_LLRRDLGVG_					0	0	0		ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	ENSG00000112039|ENST00000229769|FANCE	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.808908	997.603263	-0.047254	-2.3618E-05	-8.7065	-0.0043516	-8.7537	-0.0043752	499.80287888566835	63.458	0.31057	63.23	63.055	63.366	-0.22773	-0.19285	-0.0038437	NaN	53.351	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103170			44208	3165	30556	30607							0.1043655780838435
LLRRHGPPW	9	Unmodified	_LLRRHGPPW_					0	0	0		ENST00000300853.7_1_19:45912063-45912522:-|nuORF	ENST00000300853.7_1_19:45912063-45912522:-|nuORF	ENST00000300853.7_1_19:45912063-45912522:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.7348022460938	2	566.330342	1130.64613	0.018338	1.0386E-05	-2.1634	-0.0012252	-2.145	-0.0012148	566.3289467730269	59.795	0.35023	59.546	59.335	59.686	-0.24841					18	8	3	0	0	0	0.024541	1	6583	6583		20.482	0	1	177850			44209	11912	30557	30608	49661	49661					0.08603372656443753
LLRRQILL	8	Unmodified	_LLRRQILL_					0	0	0		OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7337646484375	2	512.853119	1023.69168	-0.37332	-0.00019146	0.44757	0.00022954	0.07425	3.8079E-05	512.8532118274637	59.038	0.39831	58.85	58.702	59.1	-0.18795					11	9	2	0	0	0	0.027866	1	6535	6535		28.254	0	1	75851			44210	18903	30558	30609	49662	49662					0.1807859811885919
LLRRQILL	8	Unmodified	_LLRRQILL_					0	0	0		OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.853119	1023.69168	0.49461	0.00025366	-0.71099	-0.00036464	-0.21639	-0.00011098	512.8524229030554	58.982	0.50241	58.982	58.679	59.182	0	0.01786	-0.00047594	NaN	20.482	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120290			44211	18903	30558	30609							0.1807859811885919
LLRRQILL	8	Unmodified	_LLRRQILL_					0	0	0		OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	OGDHL|p.V827L|1|0.28|ENSG00000197444|chr10:49737985-49737985|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.853119	1023.69168	0.059223	3.0373E-05	-0.3804	-0.00019509	-0.32118	-0.00016472	512.8528470572971	58.973	0.50122	59.059	58.74	59.241	0.085682	0.095432	-0.00013685	NaN	20.482	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104260			44212	18903	30558	30609							0.1807859811885919
LLRSIFTVT	9	Unmodified	_LLRSIFTVT_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3030395507812	2	525.321317	1048.62808	1.7532	0.000921	-2.869	-0.0015071	-1.1158	-0.00058615	525.319521110876	63.97	0.46416	64.016	63.653	64.117	0.045502					20	12	2	0	0	0	0.023817	1	7400	7400		82.305	23.523	1	123000			44213	2928	30559	30610	49663	49663					0.1057119289109778
LLRSRPLTRS	10	Unmodified	_LLRSRPLTRS_					0	0	0		ENST00000546390.1_1_12:52473886-52501266:+|nuORF	ENST00000546390.1_1_12:52473886-52501266:+|nuORF	ENST00000546390.1_1_12:52473886-52501266:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.5755615234375	3	400.250806	1197.73059	1.0581	0.00042349	3.5249	0.0014108	4.5829	0.0018343	400.25262447055104	17.846	0.19994	17.64	17.564	17.764	-0.20669					6	3	2	0	0	0	0.03519	1	225	225		27.047	7.0168	1	15039			44214	16509	30560	30611	49664	49664					0.13963278682558666
LLRSVLIA	8	Unmodified	_LLRSVLIA_					0	0	0			REV__ENSG00000184368|ENST00000379643|MAP7D2	REV__ENSG00000184368|ENST00000379643|MAP7D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.2663879394531	2	442.80002	883.585488	-1.0255	-0.0004541	1.3861	0.00061377	0.3606	0.00015967	442.8004266138243	60.715	0.31222	60.539	60.362	60.674	-0.1761					11	7	2	0	0	0	0.027866	1	6745	6745		25.45	0	1	73383	+		44215	27663	30561	30612	49665	49665					0.13903842553520462
LLRSVVTVI	9	Unmodified	_LLRSVVTVI_					0	0	0		CON__Q5D862;ENSG00000143520|ENST00000388718|FLG2	CON__Q5D862	CON__Q5D862	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3135986328125	2	500.331685	998.648816	-0.26432	-0.00013225	2.1522	0.0010768	1.8879	0.00094459	500.33326509441014	76.079	0.38781	75.911	75.666	76.054	-0.16854					20	9	3	0	0	0	0.024457	1	8986	8986		37.159	0	1	239790		+	44216	557	30562	30613	49666	49666					0.1494378327075765
LLRTGAPV	8	Unmodified	_LLRTGAPV_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.7607116699219	2	413.760895	825.507237	-1.0474	-0.00043337	1.1318	0.0004683	0.084427	3.4933E-05	413.76123361062554	48.699	0.86143	48.419	48.112	48.973	-0.27977					53	23	3	0	0	0	0.87148	1	4837	4837		53.351	0	1	2431700	+		44217	21324	30563	30614	49667	49667					0.08750409968274653
LLRTLLAPL	9	Unmodified	_LLRTLLAPL_					0	0	0			REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32366943359375	2	505.342052	1008.66955	0.036318	1.8353E-05	-1.8259	-0.00092272	-1.7896	-0.00090436	505.34189600387305	79.072	0.61481	79.091	78.86	79.475	0.018677					29	14	4	0	0	0	0.022832	1	9724	9724		104.75	53.411	1	1012100	+		44218	36900	30564	30615	49668	49668					0.16556373650394107
LLRTRELD	8	Unmodified	_LLRTRELD_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.32025146484375	2	508.298373	1014.58219	-0.30121	-0.00015311	3.3504	0.001703	3.0492	0.0015499	508.30000647051617	73.493	0.53374	73.222	72.925	73.459	-0.27126					21	13	2	0	0	0	0.027866	1	8963	8963		24.203	6.8378	1	240740			44219	18827	30565	30616	49669	49669					0.07548547708836395
LLRTRVGQG	9	Unmodified	_LLRTRVGQG_					0	0	0			REV__ENSG00000144229|ENST00000409968|THSD7B	REV__ENSG00000144229|ENST00000409968|THSD7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27685546875	2	500.306532	998.598512	-0.13286	-6.6469E-05	-0.81603	-0.00040827	-0.94889	-0.00047473	500.3052613208061	61.265	0.71281	61.049	60.87	61.583	-0.21667					33	18	3	0	0	0	0.024381	1	7048	7048		29.15	6.1071	1	662520	+		44220	24318	30566	30617	49670	49670					0.09915673665614122
LLRTSLVI	8	Unmodified	_LLRTSLVI_					0	0	0			REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.8056640625	2	457.805303	913.596052	-0.1164	-5.3289E-05	0.31648	0.00014489	0.20008	9.1599E-05	457.8053071483345	69.349	0.90129	69.364	69.053	69.955	0.015129					53	22	3	0	0	0	0.89627	1	8282	8282		51.335	3.4199	1	1407100	+		44221	27642	30567	30618	49671	49671					0.13579825207921203
LLRTYVFNII	10	Unmodified	_LLRTYVFNII_					0	0	0		ENSG00000121743|ENST00000241125|GJA3	ENSG00000121743|ENST00000241125|GJA3	ENSG00000121743|ENST00000241125|GJA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.92120361328125	3	417.920174	1250.73869	-0.018505	-7.7338E-06	1.139	0.00047603	1.1205	0.00046829	417.9205654200903	45.869	1.9879	45.914	45.28	47.268	0.044941					171	56	4	0	0	0	1.1195	1	4412	4412		20.837	0.52214	1	3223500			44222	3884	30568	30619	49672	49672					0.12335412879338037
LLRVCAPPLV	10	Unmodified	_LLRVCAPPLV_					0	0	0			REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8317260742188	2	540.833537	1079.65252	-1.5879	-0.00085881	-2.5017	-0.001353	-4.0896	-0.0022118	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	1.0665	1	9244	9244		37.159	5.6293	1	90806000	+		44223	19669	30569	30620	49673	49673					0.11588129772940192
LLRVCAPPLV	10	Unmodified	_LLRVCAPPLV_					0	0	0			REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8316650390625	2	540.833537	1079.65252	-0.45582	-0.00024652	-3.5399	-0.0019145	-3.9957	-0.002161	540.8316944739571	75.373	1.966	75.383	75.051	77.017	0.010376					182	50	6	0	0	0	0.91051	1	9210	9210		53.351	10.955	1	103560000	+		44224	19669	30569	30620	49674	49674					0.11588129772940192
LLRVLNDGIS	10	Unmodified	_LLRVLNDGIS_					0	0	0		nc|ENSG00000266733|Q9UFV1|TBC1D29P	nc|ENSG00000266733|Q9UFV1|TBC1D29P	nc|ENSG00000266733|Q9UFV1|TBC1D29P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.3267211914062	2	550.327131	1098.63971	0.95956	0.00052807	-0.57934	-0.00031883	0.38022	0.00020925	550.327154146998	99.08	0.96799	98.955	98.504	99.472	-0.12459					55	24	3	0	0	0	1.0271	1	12303	12303		42.396	1.8235	1	187150			44225	18788	30570	30621	49675	49675					0.09433389914443069
LLRVRDLHS	9	Unmodified	_LLRVRDLHS_					0	0	0			REV__nc|ENSG00000165983|Q96BW5-2|PTER	REV__nc|ENSG00000165983|Q96BW5-2|PTER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.781005859375	2	554.832914	1107.65128	1.0155	0.00056346	-1.5527	-0.00086148	-0.53713	-0.00029802	554.8320940833436	37.252	0.36633	37.252	37.12	37.486	0					12	9	2	0	0	0	0.024541	1	3021	3021		11.511	0	1	123560	+		44226	36880	30571	30622	49676	49676					0.10175631728407097
LLRVVAPI	8	Unmodified	_LLRVVAPI_					0	0	0			REV__ENST00000498008.5_1_1:46809037-46809295:+|nuORF	REV__ENST00000498008.5_1_1:46809037-46809295:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7660827636719	2	440.802563	879.590573	-0.18367	-8.0963E-05	3.5281	0.0015552	3.3444	0.0014742	440.80434888846486	37.388	0.1547	37.195	37.114	37.269	-0.193					5	3	2	0	0	0	0.027866	1	2992	2992		42.474	0	1	33995	+		44227	33866	30572	30623	49677	49677					0.1459614641613598
LLRWMDISQEF	11	Unmodified	_LLRWMDISQEF_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.30340576171875	3	479.91135	1436.71222	2.9499	0.0014157	1.4389	0.00069056	4.3888	0.0021062	479.91211324512915	18.422	0.29324	18.422	18.284	18.577	0					7	5	2	0	0	0	0.024856	1	276	276		18.531	1.3643	1	8495.3			44228	9837	30573	30624	49678	49678					0.011333559256854642
LLRWVGARM	9	Unmodified	_LLRWVGARM_					0	0	0		ENSG00000103154|ENST00000305202|NECAB2	ENSG00000103154|ENST00000305202|NECAB2	ENSG00000103154|ENST00000305202|NECAB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.3348999023438	2	551.321128	1100.6277	0.055934	3.0838E-05	-4.2282	-0.0023311	-4.1723	-0.0023003	551.318787783142	74.801	0.668	74.526	74.22	74.888	-0.27573					33	15	3	0	0	0	0.024436	1	8800	8800		38.806	0.99462	1	527010			44229	2474	30574	30625	49679	49679					0.08141494690244144
LLRYLLDL	8	Unmodified	_LLRYLLDL_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8185729980469	2	509.81841	1017.62227	0.17219	8.7784E-05	0.70054	0.00035715	0.87272	0.00044493	509.81825701954796	75.027	0.95103	74.751	74.352	75.303	-0.27573					55	22	4	0	0	0	0.44658	1	8855	8855		90.777	4.8675	1	983230	+		44230	21449	30575	30626	49680	49680					0.11416094379421793
LLRYLNADS	9	Unmodified	_LLRYLNADS_					0	0	0			REV__ENSG00000164047|ENST00000652295|CAMP	REV__ENSG00000164047|ENST00000652295|CAMP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3209838867188	2	532.790381	1063.56621	-0.37867	-0.00020175	-0.65963	-0.00035144	-1.0383	-0.00055319	532.7897938178604	30.244	0.84406	30.094	29.542	30.386	-0.14952					41	19	4	0	0	0	0.024354	1	1883	1883		23.042	0	1	355950	+		44231	25677	30576	30627	49681	49681					0.036968414719467546
LLRYNKLL	8	Unmodified	_LLRYNKLL_					0	0	0			REV__ENST00000449570.6_1_3:9798246-9807816:+|nuORF	REV__ENST00000449570.6_1_3:9798246-9807816:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7951049804688	2	516.831852	1031.64915	-0.32081	-0.00016581	0.11335	5.8583E-05	-0.20746	-0.00010722	516.8316941392254	64.048	0.97974	63.82	63.44	64.42	-0.22774					34	24	2	0	0	0	0.027866	1	7217	7217		62.978	15.063	1	78225	+		44232	32681	30577	30628	49682	49682					0.1345920299061163
LLSAAGSLSF	10	Unmodified	_LLSAAGSLSF_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;ENST00000468556.1_1_10:49450143-49459678:-|nuORF;nc|ENSG00000170324|Q68DX3-3|FRMPD2;ENST00000486151.5_1_10:49420141-49482610:-|nuORF	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.26873779296875	2	483.26875	964.522947	0.28322	0.00013687	-0.92262	-0.00044587	-0.6394	-0.000309	483.26827531432946	46.35	1.6766	46.254	45.741	47.418	-0.096649					124	45	5	0	0	0	0.88896	1	4438	4438		54.776	0.053964	1	37009000			44233	8024	30578	30629	49683	49683					0.03926651694666816
LLSAKCGRV	9	Unmodified	_LLSAKCGRV_					0	0	0			REV__ENSG00000147614|ENST00000285393|ATP6V0D2	REV__ENSG00000147614|ENST00000285393|ATP6V0D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.778564453125	2	473.778762	945.542971	0.27668	0.00013108	-2.0152	-0.00095474	-1.7385	-0.00082366	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.62163	1	1075	1075		51.335	1.3109	1	5959600	+		44234	24573	30579	30630	49684	49684					0.06802124153637124
LLSALKSL	8	Unmodified	_LLSALKSL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.25048828125	2	422.778754	843.542954	0.24426	0.00010327	0.10413	4.4024E-05	0.34838	0.00014729	422.7786738446713	53.267	0.41504	53.077	52.905	53.32	-0.18982					16	10	2	0	0	0	0.027866	1	5593	5593		29.15	0	1	145820			44235	7823	30580	30631	49685	49685					0.11492447425268892
LLSAMMTDLRG	11	Unmodified	_LLSAMMTDLRG_					0	0	0			REV__ENSG00000187758|ENST00000209668|ADH1A	REV__ENSG00000187758|ENST00000209668|ADH1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	605.2854614257812	2	604.312309	1206.61006	-1.661	-0.0010038	-3.2702	-0.0019762	-4.9311	-0.00298	604.3101330541841	57.398	0.33708	57.494	57.204	57.541	0.095306					15	8	3	0	0	0	0.024741	1	6368	6368		30.318	3.6248	1	490570	+		44236	27969	30581	30632	49686	49686					0.015023665824173804
LLSAMMTDLRG	11	Unmodified	_LLSAMMTDLRG_					0	0	0			REV__ENSG00000187758|ENST00000209668|ADH1A	REV__ENSG00000187758|ENST00000209668|ADH1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	604.312309	1206.61006	-1.2348	-0.00074622	-4.0125	-0.0024248	-5.2474	-0.003171	604.8112133481293	57.602	0.29633	57.602	57.384	57.68	0	0.040054	-5.9232E-05	NaN	30.318	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679810	+		44237	27969	30581	30632							0.015023665824173804
LLSANVKEFI	10	Unmodified	_LLSANVKEFI_					0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3301391601562	2	567.331882	1132.64921	0.23301	0.0001322	-3.6742	-0.0020845	-3.4412	-0.0019523	567.3296771474468	102.77	0.5423	102.6	102.33	102.87	-0.17034					35	12	4	0	0	0	1.0992	1	12761	12761		32.812	2.4947	1	797050	+		44238	20607	30582	30633	49687	49687					0.0881915819995811
LLSARVCL	8	Unmodified	_LLSARVCL_					0	0	0			REV__ENST00000382142.7_1_5:32312928-32313105:-|nuORF	REV__ENST00000382142.7_1_5:32312928-32313105:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.7530822753906	2	437.762581	873.510608	0.42809	0.0001874	-0.53367	-0.00023362	-0.10558	-4.6221E-05	437.7621932275396	49.303	0.75078	49.121	48.631	49.382	-0.18206					24	19	2	0	0	0	0.027866	1	4973	4973		26.796	14.589	1	159520	+		44239	31535	30583	30634	49688	49688					0.06879336750637322
LLSAWQLR	8	Unmodified	_LLSAWQLR_					0	0	0			REV__nc|ENSG00000102100|P78381-5|SLC35A2	REV__nc|ENSG00000102100|P78381-5|SLC35A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.772216796875	2	493.792727	985.5709	-0.67619	-0.0003339	-2.4059	-0.001188	-3.0821	-0.0015219	493.7923860594278	33.057	0.37307	33.063	32.85	33.223	0.0066261					15	9	2	0	0	0	0.027866	1	2315	2315		50.025	15.852	1	47226	+		44240	21288	30584	30635	49689	49689					0.07753770405361138
LLSCIVLGGL	10	Unmodified	_LLSCIVLGGL_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3009948730469	2	494.298996	986.583439	0.003029	1.4972E-06	3.2604	0.0016116	3.2634	0.0016131	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	1.1166	1	12333	12333		30.504	2.6214	1	42897000	+		44241	19851	30585	30636	49690	49690					0.08961045753392227
LLSDIISSED	10	Unmodified	_LLSDIISSED_					0	0	0		nc|ENSG00000186439|Q13061-3|TRDN;nc|ENSG00000186439|Q13061-2|TRDN;ENSG00000186439|ENST00000334268|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	nc|ENSG00000186439|Q13061-3|TRDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2760620117188	2	546.276969	1090.53938	-0.5211	-0.00028467	-1.7524	-0.00095731	-2.2735	-0.001242	546.2759398979144	77.659	4.3143	77.497	77.024	81.338	-0.16196					192	102	4	0	0	0	0.82838	1	9328	9328		58.782	3.2778	1	1561000			44242	9549	30586	30637	49691	49691					-0.002263119298731908
LLSDPIPEV	9	Unmodified	_LLSDPIPEV_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;ENSG00000141564|ENST00000306801|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.6992492675781	2	491.776408	981.538263	-0.1306	-6.4228E-05	-0.73446	-0.00036119	-0.86506	-0.00042542	491.77622336312595	28.718	0.68591	28.799	28.37	29.056	0.080811					32	16	3	0	0	0	0.024294	1	1591	1591		55.504	0	1	455340			44243	17112	30587	30638	49692	49692					0.04675518491865205
LLSDRCVTGA	10	Unmodified	_LLSDRCVTGA_					0	0	0			REV__ENST00000486256.5_1_7:6770271-6770355:+|nuORF	REV__ENST00000486256.5_1_7:6770271-6770355:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7846069335938	2	517.768591	1033.52263	-1.0465	-0.00054184	-2.9641	-0.0015347	-4.0106	-0.0020766	517.7668126465106	44.497	0.64525	44.392	44.099	44.744	-0.10468					27	16	2	0	0	0	0.03519	1	4159	4159		26.693	3.6504	1	786340	+		44244	33582	30588	30639	49693	49693					0.007209087031696981
LLSDSSPSFA	10	Unmodified	_LLSDSSPSFA_					0	0	0			REV__ENSG00000136997|ENST00000621592|MYC	REV__ENSG00000136997|ENST00000621592|MYC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2534790039062	2	512.253297	1022.49204	-0.12497	-6.4016E-05	-0.58698	-0.00030068	-0.71195	-0.0003647	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	1.0271	1	5757	5757		42.396	0	1	54943000	+		44245	23716	30589	30640	49694	49694					-0.018305464102354563
LLSDSSPSFA	10	Unmodified	_LLSDSSPSFA_					0	0	0			REV__ENSG00000136997|ENST00000621592|MYC	REV__ENSG00000136997|ENST00000621592|MYC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2537231445312	2	512.253297	1022.49204	0.46489	0.00023814	-0.70196	-0.00035958	-0.23707	-0.00012144	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.82838	1	5842	5842		58.782	7.4465	1	42815000	+		44246	23716	30589	30640	49695	49695					-0.018305464102354563
LLSDVGRLL	9	Unmodified	_LLSDVGRLL_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30596923828125	2	493.305667	984.596781	0.031035	1.531E-05	-0.50497	-0.00024911	-0.47394	-0.0002338	493.30540554648553	56.119	0.99241	56.119	55.786	56.778	0					73	27	5	0	0	0	0.13494	1	6249	6249		102.77	0	1	10044000	+		44247	20238	30590	30641	49696	49696					0.10386619857001733
LLSDYSCD	8	Unmodified	_LLSDYSCD_					0	0	0		ENST00000381261.8_1_X:1719013-1719070:+|nuORF	ENST00000381261.8_1_X:1719013-1719070:+|nuORF	ENST00000381261.8_1_X:1719013-1719070:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.2650451660156	2	458.191851	914.369149	-0.99811	-0.00045732	-1.8988	-0.00087002	-2.8969	-0.0013273	458.1908673556133	93.722	1.2385	93.582	93.266	94.504	-0.13995					56	28	3	0	0	0	0.027866	1	11603	11603		19.36	0	1	1028000			44248	13334	30591	30642	49697	49697					-0.09146126133168764
LLSDYSCD	8	Unmodified	_LLSDYSCD_					0	0	0		ENST00000381261.8_1_X:1719013-1719070:+|nuORF	ENST00000381261.8_1_X:1719013-1719070:+|nuORF	ENST00000381261.8_1_X:1719013-1719070:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2646179199219	2	458.191851	914.369149	0.024931	1.1423E-05	-3.2175	-0.0014742	-3.1926	-0.0014628	458.19040667589405	93.759	1.3676	93.613	93.306	94.673	-0.14616					68	31	4	0	0	0	0.027866	1	11618	11618		25.45	0	1	1395900			44249	13334	30591	30642	49698	49698					-0.09146126133168764
LLSDYWIV	8	Unmodified	_LLSDYWIV_					0	0	0		ENST00000598221.1_1_19:49796478-49828345:-|nuORF;nc|ENSG00000063127|Q9GZN6-2|SLC6A16;ENSG00000063127|ENST00000335875|SLC6A16	ENST00000598221.1_1_19:49796478-49828345:-|nuORF	ENST00000598221.1_1_19:49796478-49828345:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.24542236328125	2	504.773668	1007.53278	0.15911	8.0316E-05	-4.1243	-0.0020818	-3.9651	-0.0020015	504.7714280220619	56.807	1.1374	56.605	55.682	56.819	-0.20209					26	12	3	0	0	0	0.027866	1	6137	6137		37.028	0	1	802140			44250	1257	30592	30643	49699	49699					0.029318397000338337
LLSEEMNSY	9	Unmodified	_LLSEEMNSY_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2435913085938	2	543.244615	1084.47468	-0.01577	-8.5669E-06	3.2922	0.0017884	3.2764	0.0017799	543.2444413470183	67.132	3.6672	66.884	66.511	70.178	-0.24839					172	93	3	0	0	0	0.59099	1	7739	7739		53.351	5.4358	1	2240700	+		44251	28972	30593	30644	49700	49700					-0.06418210007541347
LLSELRAR	8	Unmodified	_LLSELRAR_					0	0	0			REV__nc|ENSG00000118515|O00141-3|SGK1	REV__nc|ENSG00000118515|O00141-3|SGK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.29461669921875	2	479.295633	956.576714	0.30053	0.00014404	-0.44052	-0.00021114	-0.13999	-6.7097E-05	479.29531281550055	24.41	0.85894	24.195	23.733	24.592	-0.2151					52	19	4	0	0	0	0.97794	1	1081	1081		40.778	0	1	2213900	+		44252	36604	30594	30645	49701	49701					0.0966886891702643
LLSEPRSIA	9	Unmodified	_LLSEPRSIA_					0	0	0			REV__ENST00000511367.6_1_5:31532099-31532132:-|nuORF	REV__ENST00000511367.6_1_5:31532099-31532132:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.28839111328125	2	493.287474	984.560395	-0.21668	-0.00010689	-0.26441	-0.00013043	-0.48109	-0.00023732	493.2873143771843	22.172	1.2161	22.172	21.771	22.987	0					65	25	5	0	0	0	0.83071	1	776	776		37.159	4.3467	1	3576000	+		44253	34120	30595	30646	49702	49702					0.06749742960289495
LLSERPGAP	9	Unmodified	_LLSERPGAP_					0	0	0		ENST00000410070.6_3_1:42846497-42865159:+|nuORF	ENST00000410070.6_3_1:42846497-42865159:+|nuORF	ENST00000410070.6_3_1:42846497-42865159:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7821044921875	2	470.266542	938.51853	0.18549	8.723E-05	-0.5405	-0.00025418	-0.35501	-0.00016695	470.26537104500517	29.171	0.28179	29.25	29.128	29.41	0.078346					9	6	2	0	0	0	0.024405	1	1722	1722		27.882	4.3595	1	31392			44254	13802	30596	30647	49703	49703					0.0468118727176261
LLSESNERL	9	Unmodified	_LLSESNERL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;PPFIA4|p.P529Qfs*10|1|0.12|ENSG00000143847|chr1:203051827-203051827|C/-|frameshift_variant;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;PPFIA3|p.V638Cfs*90|1|0.35|ENSG00000177380|chr19:49138261-49138261|G/-|frameshift_variant;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000131626|Q13136-2|PPFIA1;nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.7853393554688	2	530.785296	1059.55604	-0.97552	-0.00051779	0.38815	0.00020603	-0.58737	-0.00031177	530.7854988531432	42.984	1.6134	42.984	42.569	44.183	0					102	44	4	0	0	0	0.041068	3	3993	3993;4006;4017		132.76	20.347	1	5794300			44255	4537;18348	30597	30648	49704;49705;49706	49704					0.028642337467317702
LLSESNERL	9	Unmodified	_LLSESNERL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;PPFIA4|p.P529Qfs*10|1|0.12|ENSG00000143847|chr1:203051827-203051827|C/-|frameshift_variant;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;PPFIA3|p.V638Cfs*90|1|0.35|ENSG00000177380|chr19:49138261-49138261|G/-|frameshift_variant;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000131626|Q13136-2|PPFIA1;nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7852783203125	2	530.785296	1059.55604	-0.66966	-0.00035545	0.17308	9.1866E-05	-0.49659	-0.00026358	530.7853827644902	43.183	1.7335	43.044	42.631	44.365	-0.13929					112	48	4	0	0	0	0.041068	3	4012	4000;4012;4024		132.76	17.264	1	5833800			44256	4537;18348	30597	30648	49707;49708;49709	49708					0.028642337467317702
LLSESNERL	9	Unmodified	_LLSESNERL_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;PPFIA4|p.P529Qfs*10|1|0.12|ENSG00000143847|chr1:203051827-203051827|C/-|frameshift_variant;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;PPFIA3|p.V638Cfs*90|1|0.35|ENSG00000177380|chr19:49138261-49138261|G/-|frameshift_variant;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000131626|Q13136-2|PPFIA1;nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.78564453125	2	530.785296	1059.55604	0.1767	9.3788E-05	-1.0424	-0.00055327	-0.86566	-0.00045948	530.7848552249928	43.083	1.8499	43.114	42.722	44.572	0.030823					125	51	4	0	0	0	0.015752	2	3948	3948;3958		158.07	42.581	1	5614800			44257	4537;18348	30597	30648	49710;49711	49710					0.028642337467317702
LLSFINELL	9	Unmodified	_LLSFINELL_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3153686523438	2	531.3157	1060.61685	-0.71227	-0.00037844	0.44694	0.00023747	-0.26532	-0.00014097	531.3157761224343	97.26	2.5222	97.26	96.925	99.447	0					107	57	4	0	0	0	0.17455	1	12446	12446		94.006	8.6469	1	1772500	+		44258	20462	30598	30649	49712	49712					0.0889637079694694
LLSFLLER	8	Unmodified	_LLSFLLER_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.323486328125	2	495.80276	989.590967	1.9494	0.0009665	-1.386	-0.00068717	0.56339	0.00027933	495.8019529062428	63.85	0.50233	63.85	63.595	64.097	0					32	13	4	0	0	0	0.027866	1	7506	7506		30.504	5.0535	1	483360			44259	7591	30599	30650	49713	49713					0.09575521345323068
LLSFLRSNL	9	Unmodified	_LLSFLRSNL_					0	0	0			REV__ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	REV__ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.3056030273438	2	531.818941	1061.62333	0.80441	0.0004278	-2.4852	-0.0013217	-1.6808	-0.00089387	531.8179534551222	63.089	0.66666	63.144	62.888	63.555	0.054104					21	17	2	0	0	0	0.024427	1	7296	7296		26.693	7.3329	1	297720	+		44260	28900	30600	30651	49714	49714					0.09498308748334239
LLSFTVSAAL	10	Unmodified	_LLSFTVSAAL_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2357788085938	2	511.30005	1020.58555	-0.45022	-0.0002302	1.2494	0.00063881	0.79916	0.00040861	511.3004139737987	57.911	0.43452	57.733	57.319	57.754	-0.17775					16	10	2	0	0	0	0.03519	1	6302	6302		37.159	6.6555	1	380770	+		44261	23009	30601	30652	49715	49715					0.07607797762852897
LLSGALALTD	10	Unmodified	_LLSGALALTD_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	ENSG00000204642|ENST00000259951|HLA-F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2918395996094	2	487.281857	972.549162	-0.25495	-0.00012423	-4.3041	-0.0020973	-4.559	-0.0022215	487.28141031259463	60.398	0.43999	60.201	59.947	60.387	-0.19742					12	10	2	0	0	0	0.03519	1	6683	6683		27.882	0	1	82625			44262	18664;10364	30602	30653	49716	49716					0.061789208661252815
LLSGFISA	8	Unmodified	_LLSGFISA_					0	0	0			REV__nc|ENSG00000204084|P32019-3|INPP5B	REV__nc|ENSG00000204084|P32019-3|INPP5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.2326965332031	2	404.234179	806.453805	-0.10547	-4.2633E-05	-3.6241	-0.001465	-3.7296	-0.0015076	404.23247999449234	84.477	3.3436	84.404	82.163	85.507	-0.072769					158	78	4	0	0	0	1.0239	1	10563	10563		33.516	5.2613	1	13931000	+		44263	28565	30603	30654	49717	49717					0.042836124657469554
LLSGFISA	8	Unmodified	_LLSGFISA_					0	0	0			REV__nc|ENSG00000204084|P32019-3|INPP5B	REV__nc|ENSG00000204084|P32019-3|INPP5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2328186035156	2	404.234179	806.453805	0.2566	0.00010373	-4.2648	-0.001724	-4.0082	-0.0016203	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0239	1	10242	10242		33.516	0	1	12775000	+		44264	28565	30603	30654	49718	49718					0.042836124657469554
LLSGFLLPL	9	Unmodified	_LLSGFLLPL_					0	0	0		ITGAV|p.L23F|1|0.09|ENSG00000138448|chr2:186590405-186590405|C/T|missense_variant	ITGAV|p.L23F|1|0.09|ENSG00000138448|chr2:186590405-186590405|C/T|missense_variant	ITGAV|p.L23F|1|0.09|ENSG00000138448|chr2:186590405-186590405|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2919921875	2	486.810054	971.605554	-0.083239	-4.0522E-05	2.7537	0.0013405	2.6705	0.0013	486.812411090208	60.212	0.11008	59.964	59.909	60.019	-0.24842					4	2	2	0	0	0	0.024466	1	6678	6678		33.516	6.7195	1	56009			44265	17775	30604	30655	49719	49719					0.11861593493460987
LLSGKKNQSD	10	Unmodified	_LLSGKKNQSD_					0	0	0		ENSG00000184863|ENST00000401878|RBM33;nc|ENSG00000184863|Q96EV2-2|RBM33	ENSG00000184863|ENST00000401878|RBM33	ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.29857	1088.58259	0.49204	0.00026831	-3.591	-0.0019582	-3.0989	-0.0016899	545.2954268689808	86.111	0.21839	85.969	85.884	86.103	-0.14218					6	4	2	0	0	0	0.03519	1	10473	10473		34.087	11.044	1	15349			44266	9375	30605	30656	49720	49720					0.04183922638048898
LLSGKLFAA	9	Unmodified	_LLSGKLFAA_					0	0	0		ENST00000582179.5_1_17:70943804-71084903:-|nuORF	ENST00000582179.5_1_17:70943804-71084903:-|nuORF	ENST00000582179.5_1_17:70943804-71084903:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2834167480469	2	460.284203	918.553853	-0.38254	-0.00017608	-0.052951	-2.4373E-05	-0.43549	-0.00020045	460.2839007881893	65.556	1.7258	65.305	64.508	66.234	-0.25112					118	42	5	0	0	0	0.6504	1	7474	7474		49.442	3.4896	1	2475400			44267	17174	30606	30657	49721	49721					0.09131849799541669
LLSGLRRE	8	Unmodified	_LLSGLRRE_					0	0	0		ENST00000379542.9_1_6:10748006-10749500:+|nuORF;ENST00000473276.5_1_6:10748057-10756748:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2842102050781	2	472.287808	942.561064	0.59446	0.00028076	1.4325	0.00067654	2.0269	0.00095729	472.28939176396005	98.976	0.74799	98.987	98.564	99.312	0.010231					26	16	2	0	0	0	0.027866	1	12607	12607		17.365	10.629	1	84158			44268	13269	30607	30658	49722	49722					0.0874858239999412
LLSGLRRE	8	Unmodified	_LLSGLRRE_					0	0	0		ENST00000379542.9_1_6:10748006-10749500:+|nuORF;ENST00000473276.5_1_6:10748057-10756748:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	ENST00000379542.9_1_6:10748006-10749500:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.287808	942.561064	0.81754	0.00038612	2.2275	0.001052	3.045	0.0014381	472.28993709622006	99.135	0.66711	99.135	98.691	99.358	0	0.087189	0.00053291	NaN	17.365	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54278			44269	13269	30607	30658							0.0874858239999412
LLSGNDILL	9	Unmodified	_LLSGNDILL_					0	0	0		ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.28448486328125	2	479.2844	956.554247	-0.19258	-9.2301E-05	0.60147	0.00028828	0.40889	0.00019597	479.28455219110884	90.081	1.5333	90.081	89.27	90.804	0					85	36	5	0	0	0	0.4752	1	11370	11370		60.972	0	1	1732000			44270	8752	30608	30659	49723	49723					0.07423224728779587
LLSGRFGF	8	Unmodified	_LLSGRFGF_					0	0	0		ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.284912109375	2	448.75307	895.491587	-0.3097	-0.00013898	-4.027	-0.0018071	-4.3367	-0.0019461	448.75106018108926	34.665	0.657	34.66	34.336	34.993	-0.0045624					25	16	2	0	0	0	0.027866	1	2603	2603		54.765	39.123	1	247580			44271	13894	30609	30660	49724	49724					0.03966123451232306
LLSGRFGF	8	Unmodified	_LLSGRFGF_					0	0	0		ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.75307	895.491587	-0.14541	-6.5255E-05	-3.3377	-0.0014978	-3.4831	-0.0015631	448.75163512728477	34.313	0.27062	34.313	34.209	34.479	0	-0.060976	0.0018658	NaN	54.765	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123340			44272	13894	30609	30660							0.03966123451232306
LLSGRFGF	8	Unmodified	_LLSGRFGF_					0	0	0		ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	448.75307	895.491587	-0.68673	-0.00030817	-1.6494	-0.00074016	-2.3361	-0.0010483	448.7523492956655	34.118	0.31503	34.168	34.089	34.404	0.050255	-0.20546	0.003381	NaN	54.765	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100140			44273	13894	30609	30660							0.03966123451232306
LLSGRFGF	8	Unmodified	_LLSGRFGF_					0	0	0		ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	ENST00000416186.1_1_2:176049218-176049332:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	448.75307	895.491587	-0.61616	-0.0002765	-8.4263	-0.0037813	-9.0425	-0.0040578	448.75107202205714	34.53	0.206	34.354	34.168	34.374	-0.17557	-0.019689	-0.0027013	NaN	54.765	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59176			44274	13894	30609	30660							0.03966123451232306
LLSGSKKL	8	Unmodified	_LLSGSKKL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.27508544921875	2	423.276378	844.538203	0.046932	1.9865E-05	-3.3619	-0.001423	-3.315	-0.0014032	423.2748331715636	87.722	1.1912	87.722	87.406	88.597	0					78	28	4	0	0	0	1.0338	1	11032	11032		31.955	2.8053	1	3178300	+		44275	24580	30610	30661	49725	49725					0.10971563282521402
LLSGSKKL	8	Unmodified	_LLSGSKKL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.27496337890625	2	423.276378	844.538203	0.365	0.0001545	-3.6358	-0.0015389	-3.2708	-0.0013844	423.27473569730836	87.824	1.1914	87.789	87.405	88.596	-0.035355					72	28	4	0	0	0	1.0572	1	11010	11010		28.254	0.37203	1	3163800	+		44276	24580	30610	30661	49726	49726					0.10971563282521402
LLSGSKKL	8	Unmodified	_LLSGSKKL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.27496337890625	2	423.276378	844.538203	1.05	0.00044445	-4.4628	-0.001889	-3.4128	-0.0014446	423.2743858254429	87.783	1.1949	87.802	87.388	88.583	0.018555					70	28	4	0	0	0	1.0574	1	10969	10969		26.796	4.8362	1	2440400	+		44277	24580	30610	30661	49727	49727					0.10971563282521402
LLSGSKKL	8	Unmodified	_LLSGSKKL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	423.276378	844.538203	1.05	0.00044445	-4.4628	-0.001889	-3.4128	-0.0014446	423.2743858254429	87.783	1.1949	87.802	87.388	88.583	0.018555	0.020967	-0.00069118	NaN	31.955	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2440400	+		44278	24580	30610	30661							0.10971563282521402
LLSGSKKL	8	Unmodified	_LLSGSKKL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	423.276378	844.538203	0.45132	0.00019103	-3.763	-0.0015928	-3.3117	-0.0014017	423.2746798193047	87.952	0.92746	87.816	87.262	88.189	-0.13613	0.035531	-9.8716E-05	NaN	31.955	56	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1674900	+		44279	24580	30610	30661							0.10971563282521402
LLSGSSCYEMV	11	Carbamidomethyl (C),Oxidation (M)	_LLSGSSC(Carbamidomethyl (C))YEM(Oxidation (M))V_	LLSGSSC(1)YEMV	LLSGSSCYEM(1)V	LLSGSSC(49)YEMV	LLSGSSCYEM(49)V	0	1	1			REV__ENSG00000263528|ENST00000581977|IKBKE	REV__ENSG00000263528|ENST00000581977|IKBKE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	631.2755126953125	2	631.275589	1260.53662	-0.16845	-0.00010634	0.9992	0.00063077	0.83075	0.00052443	631.2759397310358	59.124	0.76721	58.943	58.628	59.395	-0.18133					49	18	4	0	0	0	0.93615	1	6529	6529		49.442	11.63	1	1597700	+		44280	29129	30611	30662	49728	49728	383	854			-0.08322226650716402
LLSGVKLPL	9	Unmodified	_LLSGVKLPL_					0	0	0			REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.3159484863281	2	470.315503	938.616454	-0.27778	-0.00013065	0.37359	0.00017571	0.095808	4.506E-05	470.31554670627236	56.263	1.1121	56.107	55.535	56.648	-0.15655					78	28	4	0	0	0	0.034181	1	6062	6062		138.24	4.7732	1	5525100	+		44281	35736	30612	30663	49729	49729					0.14468995867753165
LLSGVKLPL	9	Unmodified	_LLSGVKLPL_					0	0	0			REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.3152160644531	2	470.315503	938.616454	-0.59671	-0.00028064	0.67347	0.00031674	0.076759	3.6101E-05	470.31569899175867	56.428	1.1519	56.203	55.7	56.851	-0.2248					82	29	4	0	0	0	0.11092	1	6070	6070		108.09	1.6723	1	5121100	+		44282	35736	30612	30663	49730	49730					0.14468995867753165
LLSGVKLPL	9	Unmodified	_LLSGVKLPL_					0	0	0			REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	470.315503	938.616454	-0.27778	-0.00013065	0.37359	0.00017571	0.095808	4.506E-05	470.31554670627236	56.263	1.1121	56.107	55.535	56.648	-0.15655	-0.039617	0.00011432	NaN	138.24	78	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5525100	+		44283	35736	30612	30663							0.14468995867753165
LLSGVKLPL	9	Unmodified	_LLSGVKLPL_					0	0	0			REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	REV__ENST00000591996.1_1_17:76416381-76416633:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	470.315503	938.616454	-0.59671	-0.00028064	0.67347	0.00031674	0.076759	3.6101E-05	470.31569899175867	56.428	1.1519	56.203	55.7	56.851	-0.2248	0.056908	0.00039639	NaN	138.24	82	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5121100	+		44284	35736	30612	30663							0.14468995867753165
LLSIHITI	8	Unmodified	_LLSIHITI_					0	0	0			REV__nc|ENSG00000004766|Q96JG6-2|VPS50	REV__nc|ENSG00000004766|Q96JG6-2|VPS50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7657165527344	2	455.292028	908.569503	0.69994	0.00031868	-1.1509	-0.000524	-0.45097	-0.00020532	455.2913121260986	88.672	0.51626	88.688	88.406	88.923	0.015907					19	11	2	0	0	0	0.027866	1	11131	11131		19.36	1.0356	1	114390	+		44285	36426	30613	30664	49731	49731					0.11156136316617449
LLSISIPC	8	Unmodified	_LLSISIPC_					0	0	0		ENST00000401468.7_1_17:602604-613813:-|nuORF	ENST00000401468.7_1_17:602604-613813:-|nuORF	ENST00000401468.7_1_17:602604-613813:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.2295227050781	2	423.243689	844.472826	-1.0329	-0.00043718	-3.6025	-0.0015248	-4.6355	-0.0019619	423.24523215026386	24.116	0.70116	24.069	23.741	24.442	-0.047148					37	15	4	0	0	0	0.027866	1	994	994		33.516	11.813	1	77321			44286	13669	30614	30665	49732	49732					0.04436825765151298
LLSIVSWTVP	10	Unmodified	_LLSIVSWTVP_					0	0	0			REV__nc|ENSG00000138172|Q9HA72-3|CALHM2	REV__nc|ENSG00000138172|Q9HA72-3|CALHM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2849731445312	2	557.828975	1113.6434	-0.029869	-1.6662E-05	-0.12311	-6.8675E-05	-0.15298	-8.5337E-05	557.8289156540992	78.698	0.51748	78.443	78.254	78.772	-0.25471					16	11	2	0	0	0	0.03519	1	9359	9359		42.396	0	1	63491	+		44287	23831	30615	30666	49733	49733					0.09112059688277441
LLSKGALSSI	10	Unmodified	_LLSKGALSSI_					0	0	0			REV__ENST00000259254.8_1_2:127454005-127454110:+|nuORF	REV__ENST00000259254.8_1_2:127454005-127454110:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.8050537109375	2	494.8055	987.596446	0.33615	0.00016633	-0.90806	-0.00044931	-0.57191	-0.00028298	494.8049108362055	81.99	1.1587	81.88	81.523	82.682	-0.11006					73	27	4	0	0	0	1.0719	1	10182	10182		36.447	2.2742	1	1738300	+		44288	29587	30616	30667	49734	49734					0.10215200137145075
LLSKKFLSH	9	Unmodified	_LLSKKFLSH_					0	0	0			REV__NEDD1|p.Y170H|1|0.14|ENSG00000139350|chr12:96934994-96934994|T/C|missense_variant	REV__NEDD1|p.Y170H|1|0.14|ENSG00000139350|chr12:96934994-96934994|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3115844726562	2	536.829309	1071.64407	-0.79405	-0.00042627	-4.1369	-0.0022208	-4.9309	-0.0026471	536.8273738493629	97.411	0.94154	97.25	96.862	97.803	-0.16105					36	20	3	0	0	0	0.024487	1	12014	12014		24.203	0	1	72264	+		44289	37273	30617	30668	49735	49735					0.11110899127993434
LLSKKGLS	8	Unmodified	_LLSKKGLS_					0	0	0			REV__ENST00000430799.7_2_1:27107308-27107494:+|nuORF	REV__ENST00000430799.7_2_1:27107308-27107494:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.27508544921875	2	423.276378	844.538203	-0.082883	-3.5082E-05	-3.2282	-0.0013664	-3.3111	-0.0014015	423.27490422918225	87.973	0.84181	87.795	87.405	88.247	-0.17875					58	20	4	0	0	0	1.0574	1	10708	10708		23.042	3.6825	1	1819200	+		44290	32359	30618	30669	49736	49736					0.10971563282521402
LLSKVLIYL	9	Unmodified	_LLSKVLIYL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8026733398438	2	531.352086	1060.68962	-0.87558	-0.00046524	0.45843	0.00024359	-0.41716	-0.00022166	531.3522059538216	79.608	0.70988	79.608	79.243	79.953	0					24	16	2	0	0	0	0.024381	1	9852	9852		29.15	9.1528	1	71149			44291	2029	30619	30670	49737	49737					0.16170124590371415
LLSKWIII	8	Unmodified	_LLSKWIII_					0	0	0		ENST00000339526.8_1_1:182359866-182360031:-|nuORF	ENST00000339526.8_1_1:182359866-182360031:-|nuORF	ENST00000339526.8_1_1:182359866-182360031:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30596923828125	2	493.325871	984.637189	0.011974	5.9068E-06	-3.731	-0.0018406	-3.719	-0.0018347	493.32422743268063	56.12	0.24261	56.12	56.035	56.277	0					8	6	2	0	0	0	0.027866	1	6249	6249		143.02	36.012	1	75626			44292	12461	30620	30671	49738	49738					0.14425586247421052
LLSLFHNIP	9	Unmodified	_LLSLFHNIP_					0	0	0		ENST00000273317.4_1_3:45718871-45719018:+|nuORF	ENST00000273317.4_1_3:45718871-45719018:+|nuORF	ENST00000273317.4_1_3:45718871-45719018:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.314453125	2	527.30821	1052.60187	0.39942	0.00021062	0.24305	0.00012816	0.64247	0.00033878	527.307468690688	83.909	0.5624	83.74	83.533	84.096	-0.16915					16	12	2	0	0	0	0.024541	1	10127	10127		17.365	0	1	66472			44293	11665	30621	30672	49739	49739					0.07766923719600527
LLSLFSSALI	10	Unmodified	_LLSLFSSALI_					0	0	0		ENST00000406246.7_1_11:65421201-65421468:-|nuORF	ENST00000406246.7_1_11:65421201-65421468:-|nuORF	ENST00000406246.7_1_11:65421201-65421468:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7761840820312	2	532.323525	1062.6325	-0.59719	-0.0003179	0.57713	0.00030722	-0.020058	-1.0677E-05	532.3236278842709	82.337	0.89233	82.363	82.023	82.916	0.025719					28	20	2	0	0	0	0.03519	1	10264	10264		65.803	9.0821	1	104370			44294	13729	30622	30673	49740	49740					0.10368657313983931
LLSLHLEEN	9	Unmodified	_LLSLHLEEN_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.317138671875	2	534.290214	1066.56587	-0.77291	-0.00041296	1.705	0.00091095	0.93205	0.00049799	534.2900196324496	96.825	0.70196	96.825	96.356	97.058	0					23	15	2	0	0	0	0.023817	1	12330	12330		51.335	5.3632	1	58279			44295	8032	30623	30674	49741	49741					0.035254217521242026
LLSLHLEEN	9	Unmodified	_LLSLHLEEN_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.290214	1066.56587	0.42258	0.00022578	-0.86334	-0.00046127	-0.44076	-0.00023549	534.2893934600473	96.565	1.6198	96.429	95.894	97.514	-0.13671	-0.085701	-0.0013406	NaN	51.335	58	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93981			44296	8032	30623	30674							0.035254217521242026
LLSLHLEEN	9	Unmodified	_LLSLHLEEN_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.290214	1066.56587	-0.60694	-0.00032428	0.20836	0.00011133	-0.39857	-0.00021295	534.2892015802548	96.446	0.77925	96.29	96.132	96.911	-0.15646	-0.22474	-0.0001954	NaN	51.335	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139860			44297	8032	30623	30674							0.035254217521242026
LLSLLALIE	9	Unmodified	_LLSLLALIE_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.784423828125	2	492.820618	983.626684	-0.36227	-0.00017854	-2.8428	-0.001401	-3.2051	-0.0015795	492.81910143003495	46.64	0.45644	46.543	46.368	46.825	-0.096649					23	12	3	0	0	0	0.024457	1	4498	4498		37.159	8.0096	1	431330			44298	8375	30624	30675	49742	49742					0.13421558802326672
LLSLLLLVT	9	Unmodified	_LLSLLLLVT_					0	0	0			REV__ENSG00000013563|ENST00000369807|DNASE1L1	REV__ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7848205566406	2	492.838811	983.663069	0.082923	4.0868E-05	3.0875	0.0015216	3.1704	0.0015625	492.8399221634916	46.891	0.31077	46.622	46.526	46.837	-0.26939					9	8	2	0	0	0	0.024541	1	4539	4539		16.473	0	1	186860	+		44299	19960	30625	30676	49743	49743					0.1705843569903891
LLSLLPDE	8	Unmodified	_LLSLLPDE_					0	0	0		nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.22393798828125	2	450.257851	898.501149	-0.35384	-0.00015932	-1.2016	-0.00054102	-1.5554	-0.00070034	450.2567126434562	23.246	0.62	23.322	23.07	23.69	0.076239					18	14	2	0	0	0	0.027866	1	889	889		52.299	0	1	32709			44300	7501	30626	30677	49744	49744					0.04783846946088488
LLSLQPEGGL	10	Unmodified	_LLSLQPEGGL_					0	0	0		ENST00000230895.10_2_5:10679466-10679685:-|nuORF	ENST00000230895.10_2_5:10679466-10679685:-|nuORF	ENST00000230895.10_2_5:10679466-10679685:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7666625976562	2	513.795132	1025.57571	-0.38628	-0.00019847	-2.0288	-0.0010424	-2.415	-0.0012408	513.7941381962604	79.094	0.69805	79.113	78.818	79.516	0.018677					22	16	2	0	0	0	0.03519	1	9756	9756		71.877	13.096	1	132580			44301	11235	30627	30678	49745	49745					0.06394609757489889
LLSLRITVS	9	Unmodified	_LLSLRITVS_					0	0	0		ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	ENSG00000183185|ENST00000472788|GABRR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2742614746094	2	501.321317	1000.62808	-0.77677	-0.00038941	-0.57251	-0.00028701	-1.3493	-0.00067642	501.32086705140784	34.92	0.50598	34.733	34.479	34.985	-0.18675					28	12	3	0	0	0	0.024541	1	2566	2566		10.866	0	1	219160			44302	9205	30628	30679	49746	49746					0.12779192891082403
LLSLRNLSSL	10	Unmodified	_LLSLRNLSSL_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.327392578125	2	558.342781	1114.67101	-0.51005	-0.00028478	-0.18477	-0.00010317	-0.69482	-0.00038795	558.3425965955006	67.18	2.0152	66.898	66.63	68.645	-0.28148					162	50	5	0	0	0	0.47897	1	7969	7969		90.601	3.7193	1	10552000			44303	262	30629	30680	49747	49747					0.11825962948501001
LLSLRNLSSL	10	Unmodified	_LLSLRNLSSL_					0	0	0		CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	CHAMP1|p.F485Lfs*100|1|0.04|ENSG00000198824|chr13:114325292-114325292|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3405151367188	2	558.342781	1114.67101	0.063281	3.5333E-05	-0.68579	-0.0003829	-0.62251	-0.00034757	558.3423337379335	67.081	2.0692	67.105	66.769	68.838	0.023903					159	52	5	0	0	0	0.45418	1	7896	7896		93.143	6.2617	1	9358700			44304	262	30629	30680	49748	49748					0.11825962948501001
LLSLRPSAV	9	Unmodified	_LLSLRPSAV_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3007507324219	2	478.300384	954.586216	-1.0606	-0.0005073	-0.16764	-8.0183E-05	-1.2283	-0.00058749	478.3002496219315	37.978	1.6944	38.005	37.372	39.067	0.027275					110	46	4	0	0	0	0.43973	1	3122	3122		63.306	0	1	13748000			44305	4475	30630	30681	49749	49749					0.10710637202555517
LLSLRVHS	8	Unmodified	_LLSLRVHS_					0	0	0		ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9	ENSG00000186393|ENST00000335552|KRT26	ENSG00000186393|ENST00000335552|KRT26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.7847900390625	2	462.784902	923.55525	-0.2302	-0.00010654	-0.032676	-1.5122E-05	-0.26288	-0.00012166	462.7848338895305	43.425	1.1632	43.312	42.997	44.161	-0.11253					79	31	4	0	0	0	0.62178	1	3965	3965		74.255	0.28031	1	9235900		+	44306	566	30631	30682	49750	49750					0.0904148388832482
LLSLRVHS	8	Unmodified	_LLSLRVHS_					0	0	0		ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9	ENSG00000186393|ENST00000335552|KRT26	ENSG00000186393|ENST00000335552|KRT26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.7844543457031	2	462.784902	923.55525	-0.70821	-0.00032775	0.1496	6.923E-05	-0.55862	-0.00025852	462.7849581866432	43.57	0.99104	43.333	43.061	44.052	-0.23736					75	26	4	0	0	0	0.73796	1	3978	3978		64.207	6.396	1	10983000		+	44307	566	30631	30682	49751	49751					0.0904148388832482
LLSMEAMAFVT	11	Unmodified	_LLSMEAMAFVT_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	605.85595703125	2	606.803785	1211.59302	-0.16662	-0.00010111	4.2694	0.0025907	4.1027	0.0024896	606.8061974871961	81.849	0.88824	81.656	81.213	82.101	-0.19334					32	20	2	0	0	0	0.024762	1	9883	9883		45.972	5.3996	1	116100			44308	2270	30632	30683	49752	49752					-0.004315540234074433
LLSMHIASTGV	11	Unmodified	_LLSMHIASTGV_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8063354492188	2	564.807716	1127.60088	-0.34876	-0.00019698	-0.12027	-6.7929E-05	-0.46903	-0.00026491	564.8075199895703	100.28	0.41592	100.29	100.1	100.51	0.010117					19	8	3	0	0	0	0.81602	1	12796	12796		56.721	5.3856	1	187630	+		44309	22540	30633	30684	49753	49753					0.04218341288378724
LLSMLLYGQP	10	Unmodified	_LLSMLLYGQP_					0	0	0		TRIM3|p.V402M|1|0.27|ENSG00000110171|chr11:6456522-6456522|C/T|missense_variant	TRIM3|p.V402M|1|0.27|ENSG00000110171|chr11:6456522-6456522|C/T|missense_variant	TRIM3|p.V402M|1|0.27|ENSG00000110171|chr11:6456522-6456522|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.7844848632812	2	567.81501	1133.61547	-1.3651	-0.00077515	-1.0929	-0.00062059	-2.4581	-0.0013957	568.3160580462928	94.178	0.84854	94.184	93.771	94.619	0.0059891					50	20	3	0	0	0	0.03519	1	11960	11960		40.778	9.2484	1	314120			44310	38105	30634	30685	49754	49754					0.05400413436541385
LLSNEIRNI	9	Unmodified	_LLSNEIRNI_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.310546875	2	536.31148	1070.60841	-1.2365	-0.00066316	0.69276	0.00037154	-0.54377	-0.00029163	536.3117980036959	53.447	0.60232	53.543	53.336	53.938	0.095669					50	16	4	0	0	0	0.28753	1	5738	5738		77.318	0	1	4381700			44311	10603	30635	30686	49755	49755					0.07592816880332975
LLSNGLLII	9	Unmodified	_LLSNGLLII_					0	0	0			REV__ENSG00000179055|ENST00000641530|OR13D1	REV__ENSG00000179055|ENST00000641530|OR13D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	478.312961	954.611368	-1.1038	-0.00052796	0.30872	0.00014767	-0.79508	-0.0003803	478.31365428140896	37.991	0.20821	38.018	37.918	38.127	0.027275					8	5	2	0	0	0	0.021088	1	3083	3083		115.46	0	1	169680	+		44312	27231	30636	30687	49756	49756					0.13224692005132965
LLSPELLE	8	Unmodified	_LLSPELLE_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.26336669921875	2	457.265676	912.516799	-0.30083	-0.00013756	-2.7133	-0.0012407	-3.0142	-0.0013783	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	0.96719	1	9920	9920		42.474	0	1	3503800	+		44313	26892	30637	30688	49757	49757					0.05704133463143535
LLSPGILMN	9	Unmodified	_LLSPGILMN_					0	0	0		nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;nc|ENSG00000090975|Q9BZ72-3|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27752685546875	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.97516	1	10017	10017		25.45	1.2474	1	7158600			44314	18110	30638	30689	49758	49758					0.05648186202256511
LLSPGLLMGT	10	Unmodified	_LLSPGLLMGT_					0	0	0		nc|ENSG00000141527|Q9BXL6-3|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2902526855469	2	501.288628	1000.5627	0.11274	5.6515E-05	3.4481	0.0017285	3.5608	0.001785	501.29026904779676	98.113	1.3182	98.113	97.727	99.045	0					53	30	2	0	0	0	1.0142	1	12519	12519		44.117	1.2525	1	1822700			44315	18340	30639	30690	49759	49759					0.06244455373735036
LLSPGLLMGT	10	Unmodified	_LLSPGLLMGT_					0	0	0		nc|ENSG00000141527|Q9BXL6-3|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29052734375	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	1.0142	1	10503	10503		44.117	1.7207	1	10571000			44316	18340	30639	30690	49760	49760					0.06244455373735036
LLSPLAWAL	9	Unmodified	_LLSPLAWAL_					0	0	0			REV__ENSG00000008438|ENST00000008938|PGLYRP1	REV__ENSG00000008438|ENST00000008938|PGLYRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.2977294921875	2	492.299853	982.585153	-0.53196	-0.00026188	-2.9403	-0.0014475	-3.4722	-0.0017094	492.29770599551057	60.7	1.4677	60.446	59.794	61.262	-0.25373					72	36	4	0	0	0	0.78069	1	6758	6758		40.573	2.7611	1	1395400	+		44317	19881	30640	30691	49761	49761					0.09316422833660454
LLSPLPPLT	9	Unmodified	_LLSPLPPLT_					0	0	0			REV__SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	REV__SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.2540283203125	2	475.799686	949.584819	0.49792	0.00023691	-1.7822	-0.00084796	-1.2843	-0.00061105	475.7986135849257	27.38	0.69493	27.38	27.109	27.804	0					32	18	2	0	0	0	0.024541	1	1451	1451		7.6903	3.705	1	250040	+		44318	25674	30641	30692	49762	49762					0.10801003113806473
LLSPLPPLT	9	Unmodified	_LLSPLPPLT_					0	0	0			REV__SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	REV__SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.799686	949.584819	0.045757	2.1771E-05	-1.6615	-0.00079053	-1.6157	-0.00076876	475.79872190724825	27.346	0.66514	27.333	27.134	27.799	-0.012983	-0.065584	2.7476E-06	NaN	7.6903	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141410	+		44319	25674	30641	30692							0.10801003113806473
LLSPLPPLT	9	Unmodified	_LLSPLPPLT_					0	0	0			REV__SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	REV__SLC9B2|p.H170Qfs*94|1|0.1|ENSG00000164038|chr4:103050317-103050318|GC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.799686	949.584819	-0.60309	-0.00028695	-1.5532	-0.00073902	-2.1563	-0.001026	475.7988078099953	27.4	0.69631	27.482	27.136	27.833	0.081293	0.083582	0.00010578	NaN	7.6903	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186680	+		44320	25674	30641	30692							0.10801003113806473
LLSPLSSQPN	10	Unmodified	_LLSPLSSQPN_					0	0	0			REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.3003540039062	2	528.290214	1054.56587	1.4749	0.00077915	-1.3616	-0.00071934	0.11323	5.9816E-05	528.2890134266798	23.188	0.27305	22.997	22.851	23.124	-0.19117					7	5	2	0	0	0	0.03519	1	845	845		27.882	0	1	56360	+		44321	30866	30642	30693	49763	49763					0.04077421752117516
LLSPPGLQV	9	Unmodified	_LLSPPGLQV_					0	0	0		ENST00000538010.5_1_12:122497565-122497964:+|nuORF	ENST00000538010.5_1_12:122497565-122497964:+|nuORF	ENST00000538010.5_1_12:122497565-122497964:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.282958984375	2	462.28166	922.548768	-0.20373	-9.4181E-05	0.35598	0.00016456	0.15224	7.0379E-05	462.281672378442	76.715	1.0473	76.546	75.892	76.939	-0.16854					58	24	3	0	0	0	0.77768	1	9084	9084		40.778	8.8233	1	920980			44322	16383	30643	30694	49764	49764					0.08439545936948889
LLSPPRPGR	9	Unmodified	_LLSPPRPGR_					0	0	0		nc|ENSG00000136099|O95206-2|PCDH8;ENSG00000136099|ENST00000377942|PCDH8	nc|ENSG00000136099|O95206-2|PCDH8	nc|ENSG00000136099|O95206-2|PCDH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2655944824219	2	496.803626	991.592698	-0.3335	-0.00016568	-0.19545	-9.71E-05	-0.52895	-0.00026278	496.8033079447277	37.665	0.36723	37.697	37.487	37.854	0.032269					12	9	2	0	0	0	0.024263	1	3004	3004		51.335	2.1247	1	101360			44323	4981	30644	30695	49765	49765					0.09656575153940139
LLSPQMGK	8	Unmodified	_LLSPQMGK_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.2454528808594	2	437.246763	872.478974	-0.47858	-0.00020926	3.3059	0.0014455	2.8273	0.0012362	437.24820552491866	27.393	0.44007	27.474	27.319	27.759	0.081291					15	11	2	0	0	0	0.027866	1	1448	1448		13.775	3.5906	1	78480			44324	4666	30645	30696	49766	49766					0.03763343996695312
LLSPQMGK	8	Unmodified	_LLSPQMGK_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.246763	872.478974	-0.29817	-0.00013037	2.8527	0.0012473	2.5545	0.0011169	437.24774412085657	27.599	0.56275	27.599	27.361	27.924	0	0.062223	-0.00029825	NaN	18.324	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62720			44325	4666	30645	30696							0.03763343996695312
LLSPTFHAP	9	Unmodified	_LLSPTFHAP_					0	0	0		ENST00000225394.7_1_17:27901485-27901539:-|nuORF	ENST00000225394.7_1_17:27901485-27901539:-|nuORF	ENST00000225394.7_1_17:27901485-27901539:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.31097412109375	2	491.77146	981.528367	0.051688	2.5419E-05	0.9128	0.00044889	0.96449	0.00047431	491.77133837942444	61.856	0.59429	61.598	61.383	61.978	-0.25725					22	14	2	0	0	0	0.024294	1	6954	6954		55.504	9.5523	1	155000			44326	11206	30646	30697	49767	49767					0.036863752771296276
LLSQALSGSP	10	Unmodified	_LLSQALSGSP_					0	0	0			REV__ENST00000282388.3_2_2:43450650-43450884:-|nuORF	REV__ENST00000282388.3_2_2:43450650-43450884:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78826904296875	2	486.771657	971.528761	-0.42305	-0.00020593	-0.19313	-9.4009E-05	-0.61617	-0.00029994	486.7715830792122	46.778	0.92413	46.625	46.376	47.3	-0.15301					54	24	3	0	0	0	0.03519	1	4694	4694		37.812	0	1	1984800	+		44327	29898	30647	30698	49768	49768					0.041857502063294305
LLSQEAMGPG	10	Unmodified	_LLSQEAMGPG_					0	0	0		nc|ENSG00000236311|P0CAT3|TLX1NB	nc|ENSG00000236311|P0CAT3|TLX1NB	nc|ENSG00000236311|P0CAT3|TLX1NB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7868957519531	2	501.749867	1001.48518	0.59434	0.00029821	-3.9969	-0.0020054	-3.4026	-0.0017072	501.7477077011052	55.242	0.59474	55.242	54.979	55.573	0					43	16	4	0	0	0	0.03519	1	6053	6053		26.693	12.918	1	1101900			44328	18751	30648	30699	49769	49769					-0.01550182562448299
LLSQNKNLI	9	Unmodified	_LLSQNKNLI_					0	0	0			REV__ENSG00000124214|ENST00000371856|STAU1	REV__ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8173828125	2	521.816399	1041.61824	-0.67651	-0.00035301	0.85683	0.00044711	0.18033	9.4097E-05	521.8170059460965	64.752	0.94876	64.792	64.442	65.391	0.039429					77	25	5	0	0	0	0.27161	1	7573	7573		79.451	10.664	1	9637600	+		44329	22749	30649	30700	49770	49770					0.09910004885705348
LLSQRRPL	8	Unmodified	_LLSQRRPL_					0	0	0		ENST00000460950.1_1_1:173446500-173450645:+|nuORF	ENST00000460950.1_1_1:173446500-173450645:+|nuORF	ENST00000460950.1_1_1:173446500-173450645:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2711181640625	2	491.811451	981.608348	-0.0053524	-2.6324E-06	-0.72195	-0.00035506	-0.7273	-0.00035769	491.8111191436656	41.465	0.38519	41.342	41.189	41.574	-0.12318					11	10	2	0	0	0	0.027866	1	3723	3723		37.159	8.0096	1	53539			44330	14669	30650	30701	49771	49771					0.11680861670993181
LLSQSTVHM	9	Unmodified	_LLSQSTVHM_					0	0	0			REV__ENSG00000148156|ENST00000374667|ACTL7B	REV__ENSG00000148156|ENST00000374667|ACTL7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.81915283203125	2	508.265684	1014.51682	0.31936	0.00016232	-4.3875	-0.00223	-4.0681	-0.0020677	508.26304168076604	22.691	0.83933	22.502	22.281	23.12	-0.18894					22	17	2	0	0	0	0.024427	1	865	865		26.693	0	1	53847	+		44331	24596	30651	30702	49772	49772					0.010138101915003972
LLSQTFGHIL	10	Unmodified	_LLSQTFGHIL_					0	0	0			REV__ENSG00000166685|ENST00000299886|COG1	REV__ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.8055419921875	2	564.824224	1127.63389	-0.68065	-0.00038445	-4.2642	-0.0024085	-4.9448	-0.002793	564.8216829805492	56.602	0.43499	56.602	56.277	56.712	0					20	11	2	0	0	0	0.03519	1	6302	6302		29.15	0	1	212010	+		44332	26044	30652	30703	49773	49773					0.07518291402766408
LLSRKTIPL	9	Unmodified	_LLSRKTIPL_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.263671875	2	520.844959	1039.67537	-0.807	-0.00042032	3.7438	0.00195	2.9368	0.0015296	520.8464043197022	56.571	0.33313	56.406	56.201	56.535	-0.16431					10	8	2	0	0	0	0.024457	1	6297	6297		45.952	10.751	1	82550			44333	4705	30653	30704	49774	49774					0.15711472162092832
LLSRPSVLL	9	Unmodified	_LLSRPSVLL_					0	0	0			REV__ENST00000373122.8_1_6:41126504-41129123:-|nuORF	REV__ENST00000373122.8_1_6:41126504-41129123:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.3240051269531	2	499.32386	996.633166	-0.32988	-0.00016472	0.51494	0.00025712	0.18506	9.2404E-05	499.32405481101443	75.973	1.1005	75.973	75.659	76.759	0					54	27	2	0	0	0	0.42604	1	9342	9342		64.207	8.7031	1	6794000	+		44334	31239	30654	30705	49775	49775					0.13471496753720658
LLSRSPEAQ	9	Unmodified	_LLSRSPEAQ_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7752380371094	2	500.774731	999.534909	0.026064	1.3052E-05	-2.0343	-0.0010187	-2.0083	-0.0010057	500.7730418752975	106.45	0.30792	106.44	106.27	106.57	-0.0013123					11	8	2	0	0	0	0.77768	1	13617	13617		40.778	1.972	1	83710			44335	6833	30655	30706	49776	49776					0.035122684378507074
LLSRVGPLR	9	Unmodified	_LLSRVGPLR_					0	0	0			REV__ENST00000468090.5_1_21:45177297-45177525:+|nuORF	REV__ENST00000468090.5_1_21:45177297-45177525:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8237609863281	2	505.827101	1009.63965	0.44367	0.00022442	0.46202	0.0002337	0.90569	0.00045812	505.82712131211787	43.165	0.43848	43.195	42.974	43.413	0.030827					33	11	4	0	0	0	0.024477	1	3950	3950		27.882	0	1	1231300	+		44336	33091	30656	30707	49777	49777					0.13521434705080537
LLSSAVQLDGQ	11	Unmodified	_LLSSAVQLDGQ_					0	0	0			REV__RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	REV__RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.806640625	2	565.806228	1129.5979	-0.76532	-0.00043303	1.2651	0.00071579	0.49975	0.00028276	565.8067947601237	28.837	1.1935	28.84	28.01	29.204	0.0031376					81	28	4	0	0	0	0.99689	1	1703	1703		37.508	0.34906	1	1298000	+		44337	25491	30657	30708	49778	49778					0.038287894352379226
LLSSAVQLDGQ	11	Unmodified	_LLSSAVQLDGQ_					0	0	0			REV__RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	REV__RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.8064575195312	2	565.806228	1129.5979	-0.78682	-0.00044519	1.2407	0.00070201	0.4539	0.00025682	565.8067429670461	28.504	1.3345	28.584	27.759	29.093	0.080811					85	32	4	0	0	0	1.0281	1	1620	1620		30.569	0.065224	1	1675400	+		44338	25491	30657	30708	49779	49779					0.038287894352379226
LLSSDCSCGMS	11	Carbamidomethyl (C),Oxidation (M)	_LLSSDC(Carbamidomethyl (C))SCGM(Oxidation (M))S_	LLSSDC(0.992)SC(0.008)GMS	LLSSDCSCGM(1)S	LLSSDC(21)SC(-21)GMS	LLSSDCSCGM(41)S	0	1	1			REV__ENST00000369063.7_1_6:107040122-107067091:-|nuORF	REV__ENST00000369063.7_1_6:107040122-107067091:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	588.2227783203125	2	588.222499	1174.43044	-0.94255	-0.00055443	1.5501	0.00091179	0.60752	0.00035736	588.2232007396209	84.68	0.90655	84.68	84.341	85.247	0					60	21	4	0	0	0	0.98218	1	10624	10624		40.778	9.2484	2	1898700	+		44339	31080	30658	30709	49780	49780	408	875			-0.1497930548766817
LLSSGPEDGEE	11	Unmodified	_LLSSGPEDGEE_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.7546997070312	2	566.753858	1131.49316	-0.25163	-0.00014261	0.93983	0.00053265	0.6882	0.00039004	566.7541983733022	50.487	1.1589	50.338	50.067	51.226	-0.14916					85	33	4	0	0	0	0.81602	1	5278	5278		56.721	5.3856	1	5909700	+		44340	21099	30659	30710	49781	49781					-0.0673237683199659
LLSSIKTK	8	Unmodified	_LLSSIKTK_					0	0	0			REV__ENSG00000075826|ENST00000370345|SEC31B	REV__ENSG00000075826|ENST00000370345|SEC31B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2283020019531	2	445.289485	888.564418	-0.55264	-0.00024609	0.50733	0.00022591	-0.045318	-2.018E-05	445.2895622762119	26.63	0.60338	26.467	26.234	26.837	-0.16331					28	14	3	0	0	0	0.027866	1	1351	1351		11.511	0.64546	1	236310	+		44341	20557	30660	30711	49782	49782					0.11567832454011295
LLSSILGRSN	10	Unmodified	_LLSSILGRSN_					0	0	0		ENST00000589195.1_1_17:42307151-42307565:-|nuORF	ENST00000589195.1_1_17:42307151-42307565:-|nuORF	ENST00000589195.1_1_17:42307151-42307565:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7869873046875	2	530.31148	1058.60841	0.25684	0.0001362	-1.2351	-0.000655	-0.97829	-0.0005188	530.3106596362735	91.171	1.0381	91.032	90.363	91.402	-0.13942					36	24	3	0	0	0	0.03519	1	11186	11186		8.6937	0	1	189920			44342	17304	30661	30712	49783	49783					0.08144816880349026
LLSSLLVSGPL	11	Unmodified	_LLSSLLVSGPL_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.8563842773438	2	549.842082	1097.66961	0.17227	9.4719E-05	0.75517	0.00041522	0.92744	0.00050994	549.8422460397516	79.649	0.41577	79.43	79.285	79.701	-0.21923					18	9	3	0	0	0	0.024752	1	9565	9565		32.812	10.233	1	120130	+		44343	27290	30662	30713	49784	49784					0.12468328859790745
LLSSLLVSGPL	11	Unmodified	_LLSSLLVSGPL_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.842082	1097.66961	-0.77067	-0.00042374	0.75585	0.0004156	-0.014817	-8.1473E-06	549.8423571143263	79.679	0.21085	79.7	79.602	79.813	0.020889	0.21474	0.00036165	NaN	25.574	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58949	+		44344	27290	30662	30713							0.12468328859790745
LLSSLLVSGPL	11	Unmodified	_LLSSLLVSGPL_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.842082	1097.66961	0.47145	0.00025922	0.12751	7.0112E-05	0.59896	0.00032934	549.8420374906359	79.673	0.33395	79.426	79.278	79.612	-0.2465	-0.058913	-0.00032932	NaN	25.574	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123220	+		44345	27290	30662	30713							0.12468328859790745
LLSSLLVSGPL	11	Unmodified	_LLSSLLVSGPL_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.842082	1097.66961	0.026215	1.4414E-05	0.20896	0.00011489	0.23517	0.00012931	549.842090076984	79.535	0.33322	79.385	79.278	79.612	-0.15051	-0.10061	-0.00023976	NaN	25.574	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171940	+		44346	27290	30662	30713							0.12468328859790745
LLSSLSKLL	9	Unmodified	_LLSSLSKLL_					0	0	0		ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7908020019531	2	487.318243	972.621933	-0.59392	-0.00028943	0.12033	5.8637E-05	-0.4736	-0.00023079	487.31829348942045	78.456	1.2804	78.472	78.275	79.555	0.015907					65	30	3	0	0	0	0.024263	1	9677	9677		60.972	29.017	1	629320			44347	7750	30663	30714	49785	49785					0.13452674659572494
LLSSLVNMS	9	Unmodified	_LLSSLVNMS_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2558288574219	2	482.26261	962.510668	-0.40299	-0.00019435	0.050088	2.4156E-05	-0.3529	-0.00017019	482.2624613080436	38.228	2.1484	38.228	38.199	40.347	0					92	59	2	0	0	0	0.024487	1	3334	3334		24.203	0	1	1462100	+		44348	27726	30664	30715	49786	49786					0.027912919599884845
LLSSRRSF	8	Unmodified	_LLSSRRSF_					0	0	0			REV__nc|ENSG00000186376|P51815-2|ZNF75D;REV__ENSG00000198482|ENST00000359798|ZNF808	REV__ENSG00000198482|ENST00000359798|ZNF808	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.27880859375	2	483.279983	964.545414	0.10211	4.935E-05	-2.4416	-0.00118	-2.3395	-0.0011306	483.2788798563669	94.192	2.0448	94.192	93.177	95.222	0					106	48	5	0	0	0	1.0338	1	11976	11976		31.955	1.4512	1	1262000	+		44349	28426;27850	30665	30716	49787	49787					0.06172295882947765
LLSSSDEYY	9	Unmodified	_LLSSSDEYY_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2445678710938	2	538.742762	1075.47097	-2.0352	-0.0010965	4.304	0.0023188	2.2688	0.0012223	538.7456915686735	55.908	0.5876	55.692	55.373	55.961	-0.21551					39	15	4	0	0	0	0.024183	1	6018	6018		60.294	0	1	3994600			44350	2812	30666	30717	49788	49788					-0.06374556509740614
LLSSSKVPL	9	Unmodified	_LLSSSKVPL_					0	0	0			REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7923583984375	2	472.294768	942.574983	-0.26182	-0.00012365	-2.3004	-0.0010865	-2.5622	-0.0012101	472.295419182812	54.997	1.1824	55.095	54.525	55.707	0.098015					76	32	4	0	0	0	0.50848	1	6002	6002		58.782	0.97068	1	3588300	+		44351	21989	30667	30718	49789	49789					0.10139815108436778
LLSSSVTLKM	10	Unmodified	_LLSSSVTLKM_					0	0	0		ENSG00000236032|ENST00000641380|OR5H14	ENSG00000236032|ENST00000641380|OR5H14	ENSG00000236032|ENST00000641380|OR5H14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7926025390625	2	539.812467	1077.61038	-0.66207	-0.00035739	2.2114	0.0011937	1.5493	0.00083635	539.8126378779784	78.198	0.24033	78.198	78.042	78.282	0					11	5	3	0	0	0	0.03519	1	9656	9656		24.519	5.1592	1	167900			44352	10736	30668	30719	49790	49790					0.07468109573937909
LLSSTLPSL	9	Unmodified	_LLSSTLPSL_					0	0	0		nc|ENSG00000111452|Q6QNK2-4|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1	nc|ENSG00000111452|Q6QNK2-4|ADGRD1	nc|ENSG00000111452|Q6QNK2-4|ADGRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7775573730469	2	465.778951	929.543348	-0.18378	-8.5601E-05	-3.5688	-0.0016623	-3.7526	-0.0017479	465.7770589296706	81.53	4.4485	81.399	79.15	83.599	-0.13075					270	106	3	0	0	0	0.70186	1	10200	10200		45.952	0	1	1253000			44353	3118	30669	30720	49791	49791					0.07575822354476713
LLSSVFWIF	9	Unmodified	_LLSSVFWIF_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2766723632812	2	556.312961	1110.61137	-0.026629	-1.4814E-05	-3.1376	-0.0017455	-3.1642	-0.0017603	556.3109099421669	77.71	0.72047	77.448	77.184	77.904	-0.26201					34	16	3	0	0	0	0.024466	1	9215	9215		18.324	0	1	416110			44354	8702	30670	30721	49792	49792					0.06048692005128942
LLSSVQLL	8	Unmodified	_LLSSVQLL_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.7750549316406	2	436.776211	871.537869	-0.42442	-0.00018538	-2.8951	-0.0012645	-3.3196	-0.0014499	436.77487826052743	90.03	2.3328	90.03	89.44	91.772	0					165	55	5	0	0	0	1.0574	1	11436	11436		26.796	1.3459	1	38190000			44355	10022	30671	30722	49793	49793					0.09696143562666748
LLSSVWLLV	9	Unmodified	_LLSSVWLLV_					0	0	0			REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF	REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2821655273438	2	515.320786	1028.62702	-0.81096	-0.0004179	3.5323	0.0018203	2.7213	0.0014023	515.32289765264	65.178	0.40581	65.178	65.02	65.426	0					15	11	2	0	0	0	0.024466	1	7745	7745		33.516	8.0654	1	313880	+		44356	33052	30672	30723	49794	49794					0.11384978522164602
LLSTAFPVCI	10	Unmodified	_LLSTAFPVCI_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.2951049804688	2	532.296453	1062.57835	0.36152	0.00019244	-3.4093	-0.0018148	-3.0478	-0.0016223	532.2944444535694	95.825	1.0064	95.827	95.524	96.53	0.0020752					47	23	3	0	0	0	0.82838	1	12134	12134		58.782	0	1	613700			44357	9990	30673	30724	49795	49795					0.04956741890782723
LLSTAPAPPCP	11	Unmodified	_LLSTAPAPPCP_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.25927734375	2	533.78371	1065.55287	-0.42835	-0.00022865	-1.4224	-0.00075926	-1.8508	-0.00098791	533.7824894738759	66.299	0.7453	66.058	65.665	66.41	-0.24145					58	18	4	0	0	0	0.024766	1	7627	7627		35.618	2.8059	1	669580			44358	18057	30674	30725	49796	49796					0.022712673683372486
LLSTIRNAN	9	Unmodified	_LLSTIRNAN_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904052734375	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.72875	1	10316	10316		44.117	1.7207	1	10557000	+		44359	25663	30675	30726	49797	49797					0.06628261191792717
LLSTLTLL	8	Unmodified	_LLSTLTLL_					0	0	0		ENSG00000100522|ENST00000216410|GNPNAT1	ENSG00000100522|ENST00000216410|GNPNAT1	ENSG00000100522|ENST00000216410|GNPNAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	438.24249267578125	2	437.286411	872.55827	0.11673	5.1046E-05	0.095468	4.1747E-05	0.2122	9.2793E-05	437.28655549910115	53.694	0.4641	53.496	53.275	53.74	-0.19739					21	13	2	0	0	0	0.027866	1	5605	5605		8.8223	0	1	194400			44360	2212	30676	30727	49798	49798					0.11689314222473968
LLSTLTLL	8	Unmodified	_LLSTLTLL_					0	0	0		ENSG00000100522|ENST00000216410|GNPNAT1	ENSG00000100522|ENST00000216410|GNPNAT1	ENSG00000100522|ENST00000216410|GNPNAT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.286411	872.55827	-0.95171	-0.00041617	-0.60115	-0.00026287	-1.5529	-0.00067904	437.2862145592551	53.628	0.53998	53.492	53.357	53.897	-0.13617	-0.0020798	-0.00034118	NaN	8.8223	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166160			44361	2212	30676	30727							0.11689314222473968
LLSTLTPL	8	Unmodified	_LLSTLTPL_					0	0	0			REV__ENST00000377200.9_1_9:72328089-72328218:-|nuORF	REV__ENST00000377200.9_1_9:72328089-72328218:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.26605224609375	2	429.270761	856.52697	0.61079	0.0002622	-4.2817	-0.001838	-3.6709	-0.0015758	429.26877457272417	21.006	0.48351	20.829	20.63	21.113	-0.17721					13	9	2	0	0	0	0.027866	1	606	606		54.765	2.4655	1	21831	+		44362	31373	30677	30728	49799	49799					0.09296741188370561
LLSTLTPL	8	Unmodified	_LLSTLTPL_					0	0	0			REV__ENST00000377200.9_1_9:72328089-72328218:-|nuORF	REV__ENST00000377200.9_1_9:72328089-72328218:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	429.270761	856.52697	-0.77167	-0.00033125	-2.2429	-0.00096283	-3.0146	-0.0012941	429.26962824223136	21.17	0.39515	20.957	20.723	21.118	-0.2128	0.043313	0.0013081	NaN	54.765	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32948	+		44363	31373	30677	30728							0.09296741188370561
LLSTQFKLDL	10	Unmodified	_LLSTQFKLDL_					0	0	0			REV__ENST00000298556.7_1_X:133632445-133632670:+|nuORF	REV__ENST00000298556.7_1_X:133632445-133632670:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3430786132812	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0719	1	11876	11876		36.447	2.5251	1	12648000	+		44364	30026	30678	30729	49800	49800					0.09415427371436635
LLSTYNRNL	9	Unmodified	_LLSTYNRNL_					0	0	0			REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.31396484375	2	547.303655	1092.59276	-1.5309	-0.00083785	3.8337	0.0020982	2.3028	0.0012603	547.3049895517602	44.313	0.16508	44.313	44.183	44.348	0					6	4	2	0	0	0	0.024292	1	4211	4211		40.778	0	1	88632	+		44365	24516	30679	30730	49801	49801					0.050165303632638825
LLSVCFFK	8	Unmodified	_LLSVCFFK_					0	0	0		ENST00000269141.7_1_18:25531022-25531103:-|nuORF	ENST00000269141.7_1_18:25531022-25531103:-|nuORF	ENST00000269141.7_1_18:25531022-25531103:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.30615234375	2	478.767332	955.52011	0.43958	0.00021046	3.0373	0.0014542	3.4769	0.0016646	478.76877879976996	20.538	0.44419	20.37	20.098	20.542	-0.16774					11	8	2	0	0	0	0.027866	1	571	571		33.516	15.191	1	48306			44366	11633	30680	30731	49802	49802					0.04057105036156372
LLSVCFFK	8	Unmodified	_LLSVCFFK_					0	0	0		ENST00000269141.7_1_18:25531022-25531103:-|nuORF	ENST00000269141.7_1_18:25531022-25531103:-|nuORF	ENST00000269141.7_1_18:25531022-25531103:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.767332	955.52011	-0.17477	-8.3672E-05	-0.51404	-0.0002461	-0.6888	-0.00032978	478.7667464414311	20.697	0.47296	20.592	20.473	20.946	-0.10477	0.14867	-0.0026322	NaN	33.516	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49009			44367	11633	30680	30731							0.04057105036156372
LLSVIPVYI	9	Unmodified	_LLSVIPVYI_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.82275390625	2	508.823161	1015.63177	0.14097	7.1729E-05	-0.22621	-0.0001151	-0.085237	-4.3371E-05	508.8228394644372	99.605	0.64227	99.605	99.268	99.91	0					42	14	4	0	0	0	0.36105	1	12738	12738		68.485	0	1	380040			44368	1409	30681	30732	49803	49803					0.12457862664939512
LLSVIPVYI	9	Unmodified	_LLSVIPVYI_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.82373046875	2	508.823161	1015.63177	0.64239	0.00032687	-0.89206	-0.0004539	-0.24966	-0.00012703	508.82255066740515	99.464	0.46395	99.328	99.129	99.593	-0.13526					28	11	4	0	0	0	0.88411	1	12331	12331		33.516	0	1	118430			44369	1409	30681	30732	49804	49804					0.12457862664939512
LLSVIPVYI	9	Unmodified	_LLSVIPVYI_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.82305908203125	2	508.823161	1015.63177	-0.12349	-6.2836E-05	-0.24622	-0.00012528	-0.36971	-0.00018812	508.8229213328234	99.541	0.51899	99.372	99.118	99.637	-0.16862					22	12	2	0	0	0	0.88411	1	12320	12320		33.516	1.9858	1	138480			44370	1409	30681	30732	49805	49805					0.12457862664939512
LLSVKFLKMD	10	Unmodified	_LLSVKFLKMD_					0	0	0			REV__DNAH11|p.P1115L|1|0.64|ENSG00000105877|chr7:21601098-21601098|C/T|missense_variant	REV__DNAH11|p.P1115L|1|0.64|ENSG00000105877|chr7:21601098-21601098|C/T|missense_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	597.3536376953125	2	597.35176	1192.68897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.75	1	103.62	103.12	104.12	-0.12883								0	0	0	0.75822	1	12916	12916		25.574	4.6271	1		+		44371	19686	30682	30733	49806	49806					0.10032961879005597
LLSVLPRVV	9	Unmodified	_LLSVLPRVV_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2547302246094	2	498.334227	994.653902	-0.017604	-8.7727E-06	-0.53518	-0.0002667	-0.55278	-0.00027547	498.3338939462223	72.233	0.40874	71.958	71.747	72.155	-0.2751					12	9	2	0	0	0	0.024541	1	8442	8442		21.96	1.013	1	110120	+		44372	24029	30683	30734	49807	49807					0.15636087133373167
LLSVLPRVV	9	Unmodified	_LLSVLPRVV_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.334227	994.653902	0.67161	0.00033468	-0.39117	-0.00019493	0.28044	0.00013975	498.33389173348485	71.999	0.6954	71.999	71.718	72.414	0	0.015659	9.8164E-06	NaN	15.642	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520560	+		44373	24029	30683	30734							0.15636087133373167
LLSVLPRVV	9	Unmodified	_LLSVLPRVV_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.334227	994.653902	0.59492	0.00029647	-0.31198	-0.00015547	0.28294	0.000141	498.3339359027489	72.303	0.65744	72.022	71.807	72.465	-0.28124	0.038264	8.8743E-05	NaN	15.642	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530110	+		44374	24029	30683	30734							0.15636087133373167
LLSVLPRVV	9	Unmodified	_LLSVLPRVV_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.334227	994.653902	0.63488	0.00031638	-0.4128	-0.00020571	0.22207	0.00011067	498.33376093915626	72.04	0.93321	72.05	71.802	72.736	0.0097733	0.066468	-1.1749E-05	NaN	15.642	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502820	+		44375	24029	30683	30734							0.15636087133373167
LLSVLPRVV	9	Unmodified	_LLSVLPRVV_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.334227	994.653902	0.36272	0.00018075	-0.89354	-0.00044528	-0.53082	-0.00026453	498.3336097695296	72.15	0.45212	71.888	71.72	72.173	-0.26199	-0.09484	-0.00049088	NaN	15.642	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85917	+		44376	24029	30683	30734							0.15636087133373167
LLSVPLGSP	9	Unmodified	_LLSVPLGSP_					0	0	0			REV__CON__Q05443	REV__CON__Q05443	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7676086425781	2	441.768386	881.522219	-0.17194	-7.5957E-05	-0.7357	-0.00032501	-0.90764	-0.00040097	441.7681216130439	102.94	1.5731	102.81	102.45	104.03	-0.12783					93	37	5	0	0	0	0.55828	1	12803	12803		55.504	13.03	1	25733000	+	+	44377	19564	30684	30735	49808	49808					0.07671857045613706
LLSVSARDP	9	Unmodified	_LLSVSARDP_					0	0	0		nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19;ENSG00000165194|ENST00000373034|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3004455566406	2	479.271824	956.529095	-0.29936	-0.00014348	0.79742	0.00038218	0.49806	0.00023871	479.271744318463	37.642	0.62082	37.674	37.303	37.923	0.032269					27	16	2	0	0	0	0.024	1	3072	3072		76.847	8.0598	1	512840			44378	7378	30685	30736	49809	49809					0.049091699261907706
LLSWPLAPSR	10	Unmodified	_LLSWPLAPSR_					0	0	0			REV__ENST00000568763.1_1_16:30197020-30197302:+|nuORF	REV__ENST00000568763.1_1_16:30197020-30197302:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2723999023438	2	570.332216	1138.64988	0.13847	7.8976E-05	0.11971	6.8273E-05	0.25818	0.00014725	570.3321000030819	49.787	0.5186	49.507	49.32	49.839	-0.27977					15	13	2	0	0	0	0.03519	1	5028	5028		29.17	0	1	154030	+		44379	35354	30686	30737	49810	49810					0.08609997639655376
LLSYLLRAN	9	Unmodified	_LLSYLLRAN_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MSMS	OPSCC_39_ClassI_Rep-1	1	531.8186645507812	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.795	1	99.795	99.295	100.29	0								0	0	0	0.63578	1	12761	12761		34.173	2.6427	1		+		44380	20457	30687	30738	49811	49811					0.09498308748334239
LLSYLSMFI	9	Unmodified	_LLSYLSMFI_					0	0	0			REV__ENSG00000103044|ENST00000569188|HAS3	REV__ENSG00000103044|ENST00000569188|HAS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.7623291015625	2	543.798829	1085.5831	-1.4507	-0.00078889	-4.4068	-0.0023964	-5.8575	-0.0031853	543.796169041238	83.471	1.7478	83.497	82.874	84.621	0.026558					58	40	2	0	0	0	0.024262	1	10428	10428		68.485	22.533	1	112560	+		44381	21349	30688	30739	49812	49812					0.04373626033543587
LLTAIYIY	8	Unmodified	_LLTAIYIY_					0	0	0		ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2885437011719	2	485.286411	968.55827	3.2593	0.0015817	0.59788	0.00029014	3.8572	0.0018719	485.28684316422704	17.869	2.0137	17.869	17.449	19.463	0					85	40	5	0	0	0	1.0574	1	209	209		21.702	0.7554	1	6870700			44382	9973	30689	30740	49813	49813					0.07273314222459248
LLTANMDTCY	10	Unmodified	_LLTANMDTCY_					0	0	0			REV__nc|ENSG00000165682|Q9P126-2|CLEC1B	REV__nc|ENSG00000165682|Q9P126-2|CLEC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2866821289062	2	572.754292	1143.49403	-0.5736	-0.00032853	1.6413	0.00094007	1.0677	0.00061154	572.7553304950978	52.225	0.72401	52.106	51.796	52.52	-0.11875					47	18	3	0	0	0	0.03519	1	5470	5470		26.693	0	1	2840000	+		44383	19494	30690	30741	49814	49814					-0.0719757698830108
LLTAPELI	8	Unmodified	_LLTAPELI_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.209716796875	2	435.270761	868.52697	0.93592	0.00040738	-3.9261	-0.0017089	-2.9902	-0.0013015	435.2688173037475	98.678	0.72816	98.674	98.349	99.077	-0.0038834					39	16	3	0	0	0	0.027866	1	12511	12511		14.664	0	1	270940			44384	5353	30691	30742	49815	49815					0.08744741188377247
LLTCFLILV	9	Unmodified	_LLTCFLILV_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3|KCNT1	REV__nc|ENSG00000107147|Q5JUK3|KCNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.799560546875	2	517.819564	1033.62458	0.013705	7.0965E-06	-2.6225	-0.001358	-2.6088	-0.0013509	517.8183763245913	104.52	0.46328	104.4	104.25	104.71	-0.12561					23	11	3	0	0	0	0.024466	1	13024	13024		33.516	0	1	174290	+		44385	36550	30692	30743	49816	49816					0.10910806792867334
LLTCLLAML	9	Carbamidomethyl (C),Oxidation (M)	_LLTC(Carbamidomethyl (C))LLAM(Oxidation (M))L_	LLTC(1)LLAML	LLTCLLAM(1)L	LLTC(60)LLAML	LLTCLLAM(60)L	0	1	1		ENSG00000188807|ENST00000340381|TMEM201;nc|ENSG00000188807|Q5SNT2-2|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2949829101562	2	532.298139	1062.58172	-0.57303	-0.00030502	-4.383	-0.0023331	-4.956	-0.0026381	532.2952952315607	104.18	0.5679	104.18	103.9	104.47	0					26	12	3	0	0	0	0.4855	1	13385	13385		60.294	10.269	1	162330			44386	9753	30693	30744	49817	49817	130	403			0.052936686731527516
LLTCQLED	8	Unmodified	_LLTCQLED_					0	0	0			REV__nc|ENSG00000060709|O15034-2|RIMBP2	REV__nc|ENSG00000060709|O15034-2|RIMBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.73114013671875	2	467.731143	933.447733	-0.54561	-0.0002552	0.75943	0.00035521	0.21383	0.00010001	467.73135740885226	60.38	1.4397	60.204	59.849	61.289	-0.1761					67	35	4	0	0	0	0.59392	1	6721	6721		76.847	2.33	1	1639800	+		44387	20253	30694	30745	49818	49818					-0.021652738280636186
LLTDFVQCIP	10	Unmodified	_LLTDFVQCIP_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.7627563476562	2	574.804642	1147.59473	-0.17286	-9.936E-05	-3.8612	-0.0022194	-4.0341	-0.0023188	574.8027007214747	73.021	0.76698	72.744	72.325	73.092	-0.2769					29	17	2	0	0	0	0.03519	1	8525	8525		23.523	0	1	127690			44388	8012	30695	30746	49819	49819					0.02683823056872825
LLTDHGDVKL	10	Unmodified	_LLTDHGDVKL_					0	0	0		ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.2888793945312	2	555.811313	1109.60807	0.43013	0.00023907	-3.8794	-0.0021562	-3.4493	-0.0019171	556.3106118578304	67.832	0.56847	67.851	67.59	68.158	0.018913					21	14	2	0	0	0	0.03519	1	7993	7993		84.916	18.486	1	509020			44389	910	30696	30747	49820	49820					0.057653971604850085
LLTDLLLID	9	Unmodified	_LLTDLLLID_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.334228515625	2	514.815533	1027.61651	-0.042536	-2.1898E-05	4.4848	0.0023088	4.4422	0.0022869	514.8179168381429	49.719	0.41073	49.568	49.407	49.817	-0.1512					14	10	2	0	0	0	0.024381	1	5140	5140		37.159	9.2769	1	85024	+		44390	21449	30697	30748	49821	49821					0.10380951077104328
LLTDQHDR	8	Unmodified	_LLTDQHDR_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7691955566406	2	499.256705	996.498858	0.088651	4.4259E-05	1.454	0.00072594	1.5427	0.0007702	499.25746265395196	19.714	0.44038	19.553	19.43	19.871	-0.16079					11	8	2	0	0	0	0.027866	1	451	451		24.203	11.244	1	32358	+		44391	26425	30698	30749	49822	49822					0.0004681126099512767
LLTEDETTI	9	Unmodified	_LLTEDETTI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.799560546875	2	517.766237	1033.51792	-0.40878	-0.00021165	0.078154	4.0466E-05	-0.33062	-0.00017118	517.7672607467974	104.6	0.47862	104.47	104.2	104.68	-0.12927					15	10	2	0	0	0	0.024487	1	13054	13054		31.955	17.09	1	89557			44392	1009	30699	30750	49823	49823					0.002503030413890883
LLTEEKCKL	9	Unmodified	_LLTEEKCKL_					0	0	0			REV__ENST00000505202.5_1_5:36607109-36608519:+|nuORF	REV__ENST00000505202.5_1_5:36607109-36608519:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3280639648438	2	538.804642	1075.59473	-1.2186	-0.00065657	1.8545	0.0009992	0.63591	0.00034263	539.3063343953352	81.737	0.52851	81.762	81.29	81.819	0.025719					17	12	2	0	0	0	0.024457	1	10116	10116		29.15	0	1	465180	+		44393	34005	30700	30751	49824	49824					0.0599582305687818
LLTEIVTHG	9	Unmodified	_LLTEIVTHG_					0	0	0		ENST00000469765.5_1_1:32745435-32751314:+|nuORF;LCK|p.L453Rfs*19|1|0.06|ENSG00000182866|chr1:32285541-32285542|-/CCGACCCAGACAGAGACCACTCACT|frameshift_variant;ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK	ENST00000469765.5_1_1:32745435-32751314:+|nuORF	ENST00000469765.5_1_1:32745435-32751314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2668151855469	2	491.782025	981.549496	-0.84375	-0.00041494	-0.82598	-0.0004062	-1.6697	-0.00082114	491.7796161028417	28.69	0.54315	28.69	28.318	28.862	0					17	12	2	0	0	0	0.024294	1	1686	1686		45.952	6.6991	1	132630			44394	9171	30701	30752	49825	49825					0.057983405860113635
LLTEKLLRLLS	11	Unmodified	_LLTEKLLRLLS_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2550354003906	3	433.618384	1297.83332	0.67692	0.00029353	2.5185	0.0010921	3.1954	0.0013856	433.618114965811	103.06	0.3154	102.89	102.68	103	-0.17034					10	7	2	0	0	0	0.024828	1	12772	12772		18.531	13.625	1	187360			44395	1825	30702	30753	49826	49826					0.19631926630654561
LLTENGILL	9	Unmodified	_LLTENGILL_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3003845214844	2	493.30005	984.585547	-0.39701	-0.00019585	0.41547	0.00020495	0.018456	9.1044E-06	493.3001399464545	92.98	1.2853	92.976	92.125	93.41	-0.0041962					54	30	3	0	0	0	0.25032	1	11784	11784		82.305	2.854	1	1233600			44396	4234	30703	30754	49827	49827					0.09263797762878312
LLTENGILL	9	Unmodified	_LLTENGILL_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	493.30005	984.585547	0.041685	2.0563E-05	0.026383	1.3015E-05	0.068067	3.3578E-05	493.2999512044171	92.977	1.3369	92.977	92.178	93.515	0	0.084942	-0.00017002	NaN	82.305	50	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1256300			44397	4234	30703	30754							0.09263797762878312
LLTENGILL	9	Unmodified	_LLTENGILL_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	493.30005	984.585547	-0.17516	-8.6407E-05	0.2696	0.00013299	0.09444	4.6587E-05	493.3000629523364	92.984	0.93122	92.991	92.461	93.393	0.0077286	0.099271	6.9937E-05	NaN	82.305	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1514500			44398	4234	30703	30754							0.09263797762878312
LLTENGILL	9	Unmodified	_LLTENGILL_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.30005	984.585547	-1.9341	-0.00095411	1.6511	0.00081451	-0.28299	-0.0001396	493.30076491942674	92.893	0.96899	92.75	92.206	93.175	-0.14356	-0.14247	0.001433	NaN	82.305	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338910			44399	4234	30703	30754							0.09263797762878312
LLTENGILL	9	Unmodified	_LLTENGILL_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.30005	984.585547	0.069343	3.4207E-05	-0.43164	-0.00021293	-0.3623	-0.00017872	493.29971306260666	92.931	0.94024	92.809	92.382	93.322	-0.12221	-0.083131	-0.00062191	NaN	82.305	35	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347380			44400	4234	30703	30754							0.09263797762878312
LLTENGILL	9	Unmodified	_LLTENGILL_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.30005	984.585547	0.10205	5.0339E-05	-0.52343	-0.00025821	-0.42138	-0.00020787	493.29967363845105	92.994	0.85684	92.85	92.451	93.308	-0.1441	-0.042171	-0.00071246	NaN	82.305	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350240			44401	4234	30703	30754							0.09263797762878312
LLTENPQV	8	Unmodified	_LLTENPQV_					0	0	0		nc|ENSG00000158423|Q8N443-3|RIBC1;ENSG00000158423|ENST00000375327|RIBC1	nc|ENSG00000158423|Q8N443-3|RIBC1	nc|ENSG00000158423|Q8N443-3|RIBC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.75396728515625	2	457.2531	912.491647	0.079995	3.6578E-05	-2.5372	-0.0011602	-2.4572	-0.0011236	457.2516662646891	33.004	1.0342	32.804	32.37	33.404	-0.20019					33	25	2	0	0	0	0.027866	1	2269	2269		40.573	10.069	1	306760			44402	6668	30704	30755	49828	49828					0.031900786605774556
LLTERWNFG	9	Unmodified	_LLTERWNFG_					0	0	0			REV__ENSG00000154127|ENST00000284273|UBASH3B	REV__ENSG00000154127|ENST00000284273|UBASH3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.330078125	2	568.298373	1134.58219	-0.29976	-0.00017035	-2.568	-0.0014594	-2.8678	-0.0016298	568.2961113167331	90.648	0.87333	90.632	90.402	91.276	-0.016708					46	20	4	0	0	0	0.024436	1	11451	11451		10.866	0	1	590510	+		44403	24937	30705	30756	49829	49829					0.020285477088464177
LLTFHLNLT	9	Unmodified	_LLTFHLNLT_					0	0	0		nc|ENSG00000100354|Q9UPQ9-2|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B	nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7775268554688	2	536.313492	1070.61243	-0.90163	-0.00048355	-2.8309	-0.0015183	-3.7325	-0.0020018	536.3118191136166	57.167	0.30609	57.262	57.014	57.32	0.095306					13	7	2	0	0	0	0.023239	1	6320	6320		54.776	0	1	337210			44404	2189	30706	30757	49830	49830					0.07994906374028687
LLTFRDKEI	9	Unmodified	_LLTFRDKEI_					0	0	0		ENSG00000102962|ENST00000219235|CCL22	ENSG00000102962|ENST00000219235|CCL22	ENSG00000102962|ENST00000219235|CCL22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8299560546875	2	567.829506	1133.64446	-0.4122	-0.00023406	0.25273	0.00014351	-0.15948	-9.0556E-05	567.8295695138067	65.188	0.81934	64.954	64.687	65.507	-0.2345					58	19	4	0	0	0	0.22902	1	7450	7450		85.161	5.4482	1	2727500			44405	2449	30707	30758	49831	49831					0.08298274057187882
LLTFRDKEI	9	Unmodified	_LLTFRDKEI_					0	0	0		ENSG00000102962|ENST00000219235|CCL22	ENSG00000102962|ENST00000219235|CCL22	ENSG00000102962|ENST00000219235|CCL22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8297119140625	2	567.829506	1133.64446	-1.142	-0.00064848	0.8156	0.00046312	-0.32643	-0.00018536	567.8299076024258	65.166	0.73471	64.964	64.697	65.432	-0.20254					54	17	5	0	0	0	0.16638	1	7440	7440		95.815	0	1	3057400			44406	2449	30707	30758	49832	49832					0.08298274057187882
LLTFWKNW	8	Unmodified	_LLTFWKNW_					0	0	0		nc|ENSG00000165688|Q10713-2|PMPCA	nc|ENSG00000165688|Q10713-2|PMPCA	nc|ENSG00000165688|Q10713-2|PMPCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3011474609375	2	554.302927	1106.5913	-0.52293	-0.00028986	-2.9981	-0.0016619	-3.5211	-0.0019517	554.3010446323304	77.087	1.1642	76.925	76.7	77.864	-0.16196					52	27	3	0	0	0	0.59392	1	9177	9177		76.847	2.8719	1	1228800			44407	18468	30708	30759	49833	49833					0.04226941065189749
LLTGLLAFQN	10	Unmodified	_LLTGLLAFQN_					0	0	0		ENST00000594346.1_1_13:99098225-99098510:+|nuORF	ENST00000594346.1_1_13:99098225-99098510:+|nuORF	ENST00000594346.1_1_13:99098225-99098510:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165283203125	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.59716	3	10811	10811;10822;10835		77.318	20.597	1	3529900			44408	17405	30709	30760	49834;49835;49836	49834					0.08222889028479585
LLTGLLAFQN	10	Unmodified	_LLTGLLAFQN_					0	0	0		ENST00000594346.1_1_13:99098225-99098510:+|nuORF	ENST00000594346.1_1_13:99098225-99098510:+|nuORF	ENST00000594346.1_1_13:99098225-99098510:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3167114257812	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.88896	1	10836	10836		54.776	7.119	1	3438300			44409	17405	30709	30760	49837	49837					0.08222889028479585
LLTGLLAFQN	10	Unmodified	_LLTGLLAFQN_					0	0	0		ENST00000594346.1_1_13:99098225-99098510:+|nuORF	ENST00000594346.1_1_13:99098225-99098510:+|nuORF	ENST00000594346.1_1_13:99098225-99098510:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165893554688	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.96965	1	10736	10736		49.442	0	1	3635800			44410	17405	30709	30760	49838	49838					0.08222889028479585
LLTGYFVIV	9	Unmodified	_LLTGYFVIV_					0	0	0			REV__ENSG00000280314|ENST00000641662|OR8K3	REV__ENSG00000280314|ENST00000641662|OR8K3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.8064575195312	2	512.807511	1023.60047	-0.35239	-0.00018071	-3.9696	-0.0020356	-4.3219	-0.0022163	512.8052250840627	70.749	0.85467	70.76	70.465	71.319	0.010735					42	20	3	0	0	0	0.4855	1	8482	8482		60.294	2.4827	1	1291700	+		44411	29237	30710	30761	49839	49839					0.08961289630849478
LLTHLPPPN	9	Unmodified	_LLTHLPPPN_					0	0	0			REV__ENST00000360156.11_1_X:118827247-118827316:-|nuORF	REV__ENST00000360156.11_1_X:118827247-118827316:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.28997802734375	2	501.292559	1000.57057	-0.55827	-0.00027985	-3.5602	-0.0017847	-4.1184	-0.0020645	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.83071	1	10325	10325		37.159	1.5408	1	2156900	+		44412	30897	30711	30762	49840	49840					0.07030350685511166
LLTHLPPPN	9	Unmodified	_LLTHLPPPN_					0	0	0			REV__ENST00000360156.11_1_X:118827247-118827316:-|nuORF	REV__ENST00000360156.11_1_X:118827247-118827316:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903137207031	2	501.292559	1000.57057	-0.25386	-0.00012726	-4.0451	-0.0020278	-4.2989	-0.002155	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.94809	1	10045	10045		29.15	3.6994	1	2648000	+		44413	30897	30711	30762	49841	49841					0.07030350685511166
LLTIAASY	8	Unmodified	_LLTIAASY_					0	0	0			REV__nc|ENSG00000211891|P01854|IGHE	REV__nc|ENSG00000211891|P01854|IGHE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.24737548828125	2	426.247286	850.48002	0.05639	2.4036E-05	-1.4626	-0.00062341	-1.4062	-0.00059937	426.24743103277154	103.3	0.69844	103.17	102.79	103.49	-0.12783					47	16	5	0	0	0	1.0574	1	12868	12868		26.796	0	1	761650	+		44414	37118	30712	30763	49842	49842					0.04879881637236849
LLTIFFLRN	9	Unmodified	_LLTIFFLRN_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.8259887695312	2	568.844959	1135.67537	-0.4527	-0.00025751	3.4069	0.001938	2.9542	0.0016805	568.8466308827494	74.879	1.2248	74.879	74.256	75.481	0					64	30	3	0	0	0	0.024021	1	9114	9114		68.787	24.67	1	536000			44415	18358	30713	30764	49843	49843					0.11295472162078113
LLTIFFLRN	9	Unmodified	_LLTIFFLRN_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.82568359375	2	568.844959	1135.67537	-0.87961	-0.00050036	3.7433	0.0021294	2.8637	0.001629	568.8468098523141	74.962	1.2792	74.972	74.225	75.504	0.010368					69	31	3	0	0	0	0.024292	1	9066	9066		49.442	0	1	508110			44416	18358	30713	30764	49844	49844					0.11295472162078113
LLTIGFLFK	9	Unmodified	_LLTIGFLFK_					0	0	0		ATXN10-TUBGCP6|2|fusion;ATXN10-TUBGCP6|1|fusion;ENST00000498611.5_1_22:50657979-50682900:-|nuORF;nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6	ATXN10-TUBGCP6|2|fusion	ATXN10-TUBGCP6|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.314697265625	2	526.331153	1050.64775	-0.066763	-3.514E-05	-1.6216	-0.00085351	-1.6884	-0.00088865	526.331223312673	74.89	0.36296	74.9	74.649	75.012	0.010368					10	8	2	0	0	0	0.024541	1	9065	9065		24.203	4.206	1	121930			44417	165	30714	30765	49845	49845					0.12445568901853221
LLTILTLI	8	Unmodified	_LLTILTLI_					0	0	0			REV__nc|ENSG00000148680|P34969-3|HTR7	REV__nc|ENSG00000148680|P34969-3|HTR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2745056152344	2	450.312429	898.610306	-0.16484	-7.4229E-05	0.4112	0.00018517	0.24636	0.00011094	450.3126366185076	92.113	0.31229	92.105	91.924	92.236	-0.0082932					15	7	3	0	0	0	0.027866	1	11626	11626		8.8223	0	1	185900	+		44418	19346	30715	30766	49846	49846					0.1569447763623657
LLTILTLI	8	Unmodified	_LLTILTLI_					0	0	0			REV__nc|ENSG00000148680|P34969-3|HTR7	REV__nc|ENSG00000148680|P34969-3|HTR7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.312429	898.610306	-1.3821	-0.00062236	4.962	0.0022345	3.58	0.0016121	450.3135437682082	92.37	0.36054	92.227	91.965	92.325	-0.14356	0.060848	0.0020561	NaN	8.8223	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179090	+		44419	19346	30715	30766							0.1569447763623657
LLTILTRY	8	Unmodified	_LLTILTRY_					0	0	0			REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.28314208984375	2	496.810585	991.606617	0.28469	0.00014144	0.13092	6.5041E-05	0.41561	0.00020648	496.8103595019237	82.17	0.64487	81.95	81.659	82.304	-0.22015					19	14	2	0	0	0	0.027866	1	9843	9843		40.573	8.9937	1	132180	+		44420	25578	30716	30767	49847	49847					0.1104780786236006
LLTIRLPSP	9	Unmodified	_LLTIRLPSP_					0	0	0			REV__nc|ENSG00000128604|Q13568-6|IRF5	REV__nc|ENSG00000128604|Q13568-6|IRF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.32366943359375	2	505.32386	1008.63317	-0.021531	-1.088E-05	-1.0461	-0.00052863	-1.0676	-0.00053951	505.32367507392587	79.153	5.1565	79.172	78.693	83.85	0.018677					323	123	5	0	0	0	0.2101	1	9724	9724		87.696	15.819	1	98007000	+		44421	33651	30717	30768	49848	49848					0.12919496753693238
LLTKGFINE	9	Unmodified	_LLTKGFINE_					0	0	0		nc|ENSG00000175267|A6NCI4-3|VWA3A;nc|ENSG00000175267|A6NCI4-4|VWA3A;nc|ENSG00000175267|A6NCI4-2|VWA3A;ENSG00000175267|ENST00000389398|VWA3A	nc|ENSG00000175267|A6NCI4-3|VWA3A	nc|ENSG00000175267|A6NCI4-3|VWA3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8143310546875	2	517.797675	1033.5808	-0.72604	-0.00037594	0.86648	0.00044866	0.14044	7.2721E-05	517.7973677630174	65.167	0.56414	65.205	64.891	65.455	0.037384					27	15	2	0	0	0	0.024447	1	7585	7585		25.574	0	1	1267500			44422	8545	30718	30769	49849	49849					0.06534913620112093
LLTKLCNVLA	10	Unmodified	_LLTKLCNVLA_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.7665405273438	2	544.330827	1086.6471	-0.24498	-0.00013335	-3.0903	-0.0016822	-3.3353	-0.0018155	544.3290339978571	46.622	0.75065	46.525	46.295	47.046	-0.096649					52	20	4	0	0	0	0.03519	1	4501	4501		47.657	22.207	1	2410100	+		44423	24671	30719	30770	49850	49850					0.10724406190502123
LLTKLWICCR	10	Unmodified	_LLTKLWICCR_					0	0	0		nc|ENSG00000175221|Q9Y2X0-2|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.90325927734375	3	416.903361	1247.68826	0.053622	2.2355E-05	-1.8159	-0.00075706	-1.7623	-0.00073471	416.90299892715046	31.941	0.93558	31.756	31.321	32.257	-0.18503					73	21	4	0	0	0	1.0545	1	2190	2190		38.754	0.039523	1	2656200			44424	8542	30720	30771	49851	49851					0.07431843958306672
LLTLEMVF	8	Unmodified	_LLTLEMVF_					0	0	0			REV__ENSG00000159461|ENST00000290649|AMFR	REV__ENSG00000159461|ENST00000290649|AMFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7714538574219	2	483.272447	964.530341	0.38908	0.00018803	2.0279	0.00098005	2.417	0.0011681	483.27365837119714	95.782	0.88959	95.788	95.178	96.067	0.0058899					34	20	3	0	0	0	0.027866	1	12178	12178		54.765	17.606	1	439530	+		44425	25260	30721	30772	49852	49852					0.04665667970743925
LLTLEQKN	8	Unmodified	_LLTLEQKN_					0	0	0		nc|nan|Q9BVC5-2|C2orf49;ENSG00000135974|ENST00000258457|C2orf49	nc|nan|Q9BVC5-2|C2orf49	nc|nan|Q9BVC5-2|C2orf49	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7841491699219	2	479.782025	957.549496	0.20602	9.8847E-05	4.2405	0.0020345	4.4465	0.0021333	479.7839161313922	96.725	1.1986	96.725	96.44	97.639	0					71	26	5	0	0	0	0.81662	1	12356	12356		57.811	2.3071	1	2318500			44426	4964	30722	30773	49853	49853					0.06902340586009359
LLTLFISLSL	10	Unmodified	_LLTLFISLSL_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3399047851562	2	560.354825	1118.6951	0.3872	0.00021697	4.1276	0.0023129	4.5148	0.0025299	560.3572436810156	101.22	0.38914	101.09	100.94	101.33	-0.12576					13	8	2	0	0	0	0.03519	1	12586	12586		26.693	0	1	130490	+		44427	20345	30723	30774	49854	49854					0.1404980338218138
LLTLFTAR	8	Unmodified	_LLTLFTAR_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.73114013671875	2	467.789653	933.564752	-0.38116	-0.0001783	0.26778	0.00012526	-0.11338	-5.3039E-05	467.7897028282102	60.248	0.48134	60.072	59.922	60.403	-0.1761					19	11	2	0	0	0	0.027866	1	6721	6721		63.306	0	1	136750	+		44428	22489	30724	30775	49855	49855					0.09531252173849225
LLTLFTAR	8	Unmodified	_LLTLFTAR_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.73101806640625	2	467.789653	933.564752	-0.69547	-0.00032534	-0.009665	-4.5212E-06	-0.70514	-0.00032986	467.78955350794627	60.43	0.52316	60.176	59.94	60.463	-0.25373					19	12	2	0	0	0	0.027866	1	6725	6725		90.777	8.4716	1	118050	+		44429	22489	30724	30775	49856	49856					0.09531252173849225
LLTLGLAAQH	10	Unmodified	_LLTLGLAAQH_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32;ENST00000464145.1_1_11:76369030-76376998:-|nuORF	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.8101806640625	2	518.811116	1035.60768	0.7238	0.00037552	-2.1456	-0.0011131	-1.4218	-0.00073763	518.8098889136849	95.14	1.3841	95.018	94.641	96.025	-0.12251					65	31	3	0	0	0	1.0271	1	11758	11758		42.396	0	1	1303400			44430	5133	30725	30776	49857	49857					0.09130022231261137
LLTLLTQLT	9	Unmodified	_LLTLLTQLT_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7948913574219	2	508.323525	1014.6325	-0.077146	-3.9215E-05	0.73114	0.00037166	0.654	0.00033244	508.3232764015704	78.531	0.64578	78.375	78.085	78.731	-0.15591					39	14	4	0	0	0	0.024495	1	9404	9404		26.693	1.1189	1	278110			44431	18142	30726	30777	49858	49858					0.1257665731399129
LLTLLVDL	8	Unmodified	_LLTLLVDL_					0	0	0			REV__nc|ENSG00000290649|Q8NH63|OR51H1	REV__nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2745361328125	2	450.294236	898.57392	0.33311	0.00015	-3.3279	-0.0014985	-2.9948	-0.0013485	450.29297135431113	92.314	0.39439	92.323	92.152	92.546	0.0094147					15	9	2	0	0	0	0.027866	1	11663	11663		26.796	0	1	284680	+		44432	37229	30727	30778	49859	49859					0.12057600739512964
LLTLPKGK	8	Unmodified	_LLTLPKGK_					0	0	0			REV__ENST00000495442.1_1_12:9220650-9221456:-|nuORF	REV__ENST00000495442.1_1_12:9220650-9221456:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.8913879394531	2	435.294571	868.574589	-0.35172	-0.0001531	-0.12671	-5.5158E-05	-0.47843	-0.00020826	435.2942820737914	65.266	0.73903	65.032	64.768	65.507	-0.2345					24	17	2	0	0	0	0.027866	1	7454	7454		47.916	0	1	273200	+		44433	33804	30728	30779	49860	49860					0.13504440179235644
LLTLPPTT	8	Unmodified	_LLTLPPTT_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2618408203125	2	428.262936	854.51132	0.49679	0.00021276	-3.3115	-0.0014182	-2.8147	-0.0012054	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0574	1	11320	11320		20.482	0	1	86424000			44434	16656	30729	30780	49861	49861					0.07824454671310832
LLTLPPTT	8	Unmodified	_LLTLPPTT_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.26171875	2	428.262936	854.51132	-0.55429	-0.00023738	-2.187	-0.0009366	-2.7413	-0.001174	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0239	1	11071	11071		33.516	6.7195	1	83817000			44435	16656	30729	30780	49862	49862					0.07824454671310832
LLTLPPTT	8	Unmodified	_LLTLPPTT_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2617492675781	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0574	2	11002	11002;11097		25.45	3.7209	1	68116000			44436	16656	30729	30780	49863;49864	49863					0.07824454671310832
LLTLPPTT	8	Unmodified	_LLTLPPTT_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2616882324219	2	428.262936	854.51132	0.60688	0.0002599	-3.4974	-0.0014978	-2.8905	-0.0012379	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.0239	1	11078	11078		33.516	6.7195	1	63872000			44437	16656	30729	30780	49865	49865					0.07824454671310832
LLTLPVIIR	9	Unmodified	_LLTLPVIIR_					0	0	0		FPR1|p.L240Yfs*24|1|0.28|ENSG00000171051|chr19:51746278-51746278|G/-|frameshift_variant;ENSG00000171051|ENST00000304748|FPR1	FPR1|p.L240Yfs*24|1|0.28|ENSG00000171051|chr19:51746278-51746278|G/-|frameshift_variant	FPR1|p.L240Yfs*24|1|0.28|ENSG00000171051|chr19:51746278-51746278|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.357666015625	2	519.357702	1036.70085	-0.64784	-0.00033646	0.81192	0.00042168	0.16408	8.5217E-05	519.3579685211666	82.244	1.512	82.104	81.827	83.339	-0.14014					71	34	4	0	0	0	0.27161	1	9898	9898		79.451	2.1334	1	1159000			44438	8107	30730	30781	49866	49866					0.18396946684492832
LLTLQLRR	8	Unmodified	_LLTLQLRR_					0	0	0		ENST00000428202.6_2_5:75013174-75013210:-|nuORF	ENST00000428202.6_2_5:75013174-75013210:-|nuORF	ENST00000428202.6_2_5:75013174-75013210:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3006896972656	2	506.834926	1011.6553	-1.3193	-0.00066865	0.9437	0.0004783	-0.37556	-0.00019035	506.83525317014806	24.691	0.70624	24.644	24.442	25.148	-0.047148					36	15	3	0	0	0	0.027866	1	1117	1117		26.796	0	1	333840			44439	14126	30731	30782	49867	49867					0.14993721222128897
LLTLSGLLPI	10	Unmodified	_LLTLSGLLPI_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.32958984375	2	520.341718	1038.66888	0.51588	0.00026843	4.2217	0.0021968	4.7376	0.0024652	520.3445076928853	69.956	0.20333	69.663	69.551	69.754	-0.29292					6	4	2	0	0	0	0.03519	1	8406	8406		79.451	10.664	1	51938			44440	7855;17923	30732	30783	49868	49868					0.15109534210705533
LLTLSVLKV	9	Unmodified	_LLTLSVLKV_					0	0	0			REV__ENST00000504194.5_1_4:3387770-3387881:+|nuORF	REV__ENST00000504194.5_1_4:3387770-3387881:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2873229980469	2	493.336436	984.658318	-0.52376	-0.00025839	1.3928	0.00068714	0.86909	0.00042875	493.3376676912158	22.499	0.17926	22.314	22.236	22.415	-0.18539					5	3	2	0	0	0	0.024523	1	807	807		29.15	6.1071	1	24972	+		44441	33976	30733	30784	49869	49869					0.16537551556268681
LLTLVNKHRN	10	Unmodified	_LLTLVNKHRN_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.2470397949219	3	403.247173	1206.71969	0.06455	2.6029E-05	-0.8102	-0.00032671	-0.74565	-0.00030068	403.246861555348	103.54	1.4225	103.37	102.95	104.38	-0.17034					83	36	4	0	0	0	1.1211	1	12863	12863		21.686	3.1547	1	1393700			44442	9914	30734	30785	49870	49870					0.12459876308275852
LLTMLAMLL	9	2 Oxidation (M)	_LLTM(Oxidation (M))LAM(Oxidation (M))LL_		LLTM(1)LAM(1)LL		LLTM(96)LAM(96)LL	0	0	2		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.8029174804688	2	525.800514	1049.58648	0.37672	0.00019808	3.3304	0.0017512	3.7072	0.0019492	525.802385848111	101.72	1.529	101.71	101.06	102.59	-0.0054474					86	34	5	0	0	0	0.16533	1	12966	12966		96.048	8.2934	1	2156700			44443	3719	30735	30786	49871	49871		144;145			0.06366552815916293
LLTMVLLFV	9	Unmodified	_LLTMVLLFV_					0	0	0		nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4	nc|ENSG00000179242|P55283-2|CDH4	nc|ENSG00000179242|P55283-2|CDH4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8270874023438	2	524.827389	1047.64023	0.5509	0.00028913	-1.7426	-0.00091458	-1.1917	-0.00062545	524.8263320992579	98.046	2.2952	97.91	97.423	99.718	-0.13625					172	55	6	0	0	0	0.78069	1	12115	12115		40.573	1.5511	1	14595000			44444	8883	30736	30787	49872	49872					0.11831093309933749
LLTMVLLFV	9	Unmodified	_LLTMVLLFV_					0	0	0		nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4	nc|ENSG00000179242|P55283-2|CDH4	nc|ENSG00000179242|P55283-2|CDH4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.8267822265625	2	524.827389	1047.64023	-0.04084	-2.1434E-05	-1.2258	-0.00064335	-1.2667	-0.00066478	524.8266178770541	98.118	1.9254	97.953	97.397	99.322	-0.1652					155	45	5	0	0	0	0.85941	1	12118	12118		35.201	1.6851	1	11527000			44445	8883	30736	30787	49873	49873					0.11831093309933749
LLTPLQLQP	9	Unmodified	_LLTPLQLQP_					0	0	0			REV__nc|ENSG00000164122|Q8WWX0-2|ASB5	REV__nc|ENSG00000164122|Q8WWX0-2|ASB5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7586975097656	2	511.815867	1021.61718	-0.52668	-0.00026956	-2.3792	-0.0012177	-2.9059	-0.0014873	511.81414951023385	26.474	0.826	26.451	25.909	26.735	-0.023088					33	19	3	0	0	0	0.024506	1	1291	1291		23.042	0	1	129010	+		44446	25700	30737	30788	49874	49874					0.10723790516806275
LLTPMIHLN	9	Unmodified	_LLTPMIHLN_					0	0	0			REV__ENSG00000112981|ENST00000265191|NME5	REV__ENSG00000112981|ENST00000265191|NME5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2869873046875	2	526.30207	1050.58959	1.1903	0.00062644	3.3954	0.001787	4.5857	0.0024135	526.3036868123257	82.511	0.12853	82.401	82.294	82.422	-0.11006					4	2	2	0	0	0	0.024292	1	10263	10263		49.442	5.3247	1	22999	+		44447	22032	30738	30789	49875	49875					0.06631563984933564
LLTPNNEN	8	Unmodified	_LLTPNNEN_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.29559326171875	2	457.732532	913.45051	0.46382	0.00021231	-3.4094	-0.0015606	-2.9456	-0.0013483	457.73055509942054	55.982	0.17711	55.982	55.822	55.999	0					6	4	2	0	0	0	0.027866	1	6212	6212		31.955	1.4512	1	63244	+		44448	28475	30739	30790	49876	49876					-0.009676823789050104
LLTPQGPSP	9	Unmodified	_LLTPQGPSP_					0	0	0		ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant;ENSG00000078061|ENST00000377045|ARAF	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2462158203125	2	455.255643	908.496732	-0.3849	-0.00017523	-0.14089	-6.4143E-05	-0.52579	-0.00023937	455.25560757276344	42.671	0.78724	42.439	41.937	42.725	-0.23186					26	20	2	0	0	0	0.024319	1	3768	3768		66.429	20.477	1	178250			44449	111	30740	30791	49877	49877					0.03882382523192973
LLTPQGPSP	9	Unmodified	_LLTPQGPSP_					0	0	0		ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant;ENSG00000078061|ENST00000377045|ARAF	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	ARAF|p.L207Yfs*85|1|0.31|ENSG00000078061|chrX:47566695-47566695|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.255643	908.496732	0.081065	3.6905E-05	0.19281	8.7779E-05	0.27388	0.00012468	455.2555405554459	42.585	0.64629	42.462	42.037	42.683	-0.12299	-0.00092355	1.9875E-05	NaN	36.447	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142170			44450	111	30740	30791							0.03882382523192973
LLTPRVSVP	9	Unmodified	_LLTPRVSVP_					0	0	0		ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.33697509765625	2	491.30821	980.601866	-0.73189	-0.00035958	0.54944	0.00026994	-0.18245	-8.9641E-05	491.3084652928145	76.28	0.52091	76.012	75.817	76.338	-0.26807					15	12	2	0	0	0	0.024436	1	9074	9074		30.504	0	1	78004			44451	17020	30741	30792	49878	49878					0.11078923719617251
LLTPWLQQGE	10	Unmodified	_LLTPWLQQGE_					0	0	0		ENST00000597723.5_1_19:50431071-50432707:-|nuORF;ENST00000596217.1_2_19:50432578-50432707:-|nuORF;ENST00000600583.5_1_19:50430999-50432707:-|nuORF	ENST00000597723.5_1_19:50431071-50432707:-|nuORF	ENST00000597723.5_1_19:50431071-50432707:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.2976684570312	2	592.819138	1183.62372	-0.5624	-0.0003334	2.2842	0.0013541	1.7218	0.0010207	592.8211196876797	82.478	0.73759	82.297	82.027	82.765	-0.18079					47	16	4	0	0	0	0.03519	1	9961	9961		54.776	1.8396	1	401140			44452	17430	30742	30793	49879	49879					0.039256836774939075
LLTPWLQQGE	10	Unmodified	_LLTPWLQQGE_					0	0	0		ENST00000597723.5_1_19:50431071-50432707:-|nuORF;ENST00000596217.1_2_19:50432578-50432707:-|nuORF;ENST00000600583.5_1_19:50430999-50432707:-|nuORF	ENST00000597723.5_1_19:50431071-50432707:-|nuORF	ENST00000597723.5_1_19:50431071-50432707:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.819138	1183.62372	-0.031409	-1.862E-05	2.4206	0.001435	2.3892	0.0014164	592.8208950924773	82.501	0.91049	82.281	81.914	82.824	-0.22015	-0.0080761	-0.00069786	NaN	45.972	53	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407520			44453	17430	30742	30793							0.039256836774939075
LLTRPLETPL	10	Unmodified	_LLTRPLETPL_					0	0	0		ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.3052368164062	2	576.852981	1151.69141	0.38381	0.0002214	-3.7598	-0.0021689	-3.376	-0.0019475	576.8509876877828	96.19	0.37376	96.067	95.813	96.187	-0.12305					14	8	2	0	0	0	0.03519	1	11855	11855		27.882	6.9353	1	83489			44454	1940	30743	30794	49880	49880					0.12163133608351018
LLTSALKKM	9	Unmodified	_LLTSALKKM_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.8139953613281	2	502.81227	1003.60999	0.44787	0.00022519	2.342	0.0011776	2.7899	0.0014028	502.8135488206677	96.216	2.0121	96.08	95.682	97.694	-0.13671					136	45	5	0	0	0	0.83071	1	11900	11900		37.159	12.64	1	16921000	+		44455	27294	30744	30795	49881	49881					0.10832734644736774
LLTSALKKM	9	Unmodified	_LLTSALKKM_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.8136901855469	2	502.81227	1003.60999	-0.52334	-0.00026314	3.1191	0.0015683	2.5958	0.0013052	502.8139776910766	96.308	1.7928	96.151	95.794	97.587	-0.15646					121	40	5	0	0	0	0.94809	1	11904	11904		29.15	2.3535	1	13743000	+		44456	27294	30744	30795	49882	49882					0.10832734644736774
LLTSDLLSL	9	Unmodified	_LLTSDLLSL_					0	0	0		nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.791259765625	2	487.792058	973.569563	0.56547	0.00027583	-3.5408	-0.0017272	-2.9753	-0.0014513	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.67308	1	10156	10156		47.916	1.1492	1	2408700			44457	7085	30745	30796	49883	49883					0.08172091525955238
LLTSFPHM	8	Unmodified	_LLTSFPHM_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.28778076171875	2	473.246763	944.478974	0.68179	0.00032266	0.36447	0.00017248	1.0463	0.00049514	473.24802742012605	94.321	0.23535	94.321	94.167	94.402	0					6	5	2	0	0	0	0.027866	1	12002	12002		29.842	4.3914	1	38919			44458	8759	30746	30797	49884	49884					0.004513439966899568
LLTSSDPPSSA	11	Unmodified	_LLTSSDPPSSA_					0	0	0		nc|ENSG00000162946|Q9NRI5-5|DISC1	nc|ENSG00000162946|Q9NRI5-5|DISC1	nc|ENSG00000162946|Q9NRI5-5|DISC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3273315429688	2	537.769311	1073.52407	0.48654	0.00026165	1.5981	0.00085942	2.0847	0.0011211	538.2721629668392	99.701	0.16933	99.576	99.472	99.641	-0.12459					6	4	2	0	0	0	0.024747	1	12363	12363		39.253	0	1	30019			44459	18437	30747	30798	49885	49885					-0.009751787270943169
LLTSTSAF	8	Unmodified	_LLTSTSAF_					0	0	0		nc|ENSG00000253771|Q5T6R2-2|TPTE2P1;nc|ENSG00000253771|Q5T6R2|TPTE2P1	nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.24102783203125	2	420.229094	838.443634	0.1666	7.0012E-05	-4.4471	-0.0018688	-4.2805	-0.0017988	420.2274715219066	37.315	0.58075	37.122	36.927	37.508	-0.193					20	14	2	0	0	0	0.027866	1	3031	3031		20.482	0	1	117330			44460	18769	30748	30799	49886	49886					0.01795004740540662
LLTTGCTKLI	10	Unmodified	_LLTTGCTKLI_					0	0	0			REV__ENSG00000123505|ENST00000368885|AMD1	REV__ENSG00000123505|ENST00000368885|AMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.295654296875	2	531.81501	1061.61547	0.41662	0.00022157	-0.41632	-0.00022141	0.00030195	1.6058E-07	531.816012384209	78.072	0.73488	77.88	77.522	78.257	-0.19211					31	17	3	0	0	0	0.03519	1	9595	9595		62.107	19.711	1	215730	+		44461	22702	30749	30800	49887	49887					0.0871241343654674
LLTTGRIVK	9	Unmodified	_LLTTGRIVK_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.801025390625	2	500.829309	999.644065	0.21546	0.00010791	-0.27856	-0.00013951	-0.063093	-3.1599E-05	500.8289906561922	46.668	0.55486	46.668	46.412	46.967	0					25	14	2	0	0	0	0.024374	1	4646	4646		32.812	0	1	605390	+		44462	27924	30750	30801	49888	49888					0.1442289912798742
LLTTPQLH	8	Unmodified	_LLTTPQLH_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7723083496094	2	461.77146	921.528367	0.16911	7.8089E-05	2.0933	0.00096663	2.2624	0.0010447	461.7720766093848	98.419	0.93749	98.419	98.063	99.001	0					47	21	3	0	0	0	0.91239	1	12561	12561		50.025	0	1	819260			44463	915	30751	30802	49889	49889					0.06446375277153038
LLTVAEEC	8	Carbamidomethyl (C)	_LLTVAEEC(Carbamidomethyl (C))_	LLTVAEEC(1)		LLTVAEEC(110)		0	1	0			REV__ENST00000494295.1_1_X:134477218-134477365:-|nuORF	REV__ENST00000494295.1_1_X:134477218-134477365:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7311706542969	2	467.731143	933.447733	0.33005	0.00015437	-0.021155	-9.8946E-06	0.30889	0.00014448	467.73101857583174	60.103	1.0543	60.103	59.675	60.73	0					79	28	4	0	0	0	0.29372	2	6903	6903;6916		114.59	12.761	1	5000800	+		44464	33780	30752	30803	49890;49891	49890	445				-0.021652738280636186
LLTVDMGF	8	Unmodified	_LLTVDMGF_					0	0	0			REV__ENSG00000004487|ENST00000400181|KDM1A	REV__ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.7613220214844	2	448.233322	894.45209	0.05356	2.4008E-05	3.7017	0.0016592	3.7552	0.0016832	448.23492170235863	32.614	0.45501	32.677	32.428	32.883	0.062885					19	11	2	0	0	0	0.027866	1	2245	2245		20.482	3.1169	1	201440	+		44465	19779	30753	30804	49892	49892					0.0006423538550279773
LLTVINLN	8	Unmodified	_LLTVINLN_					0	0	0			REV__nc|ENSG00000175697|Q8NFN8-2|GPR156	REV__nc|ENSG00000175697|Q8NFN8-2|GPR156	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2686767578125	2	450.28166	898.548768	-1.3191	-0.00059395	1.0998	0.00049521	-0.2193	-9.8746E-05	450.2819506757643	52.403	0.48586	52.134	51.869	52.354	-0.26903					23	12	2	0	0	0	0.027866	1	5400	5400		12.959	0	1	203220	+		44466	26966	30754	30805	49893	49893					0.09543545936946884
LLTVMAFDL	9	Unmodified	_LLTVMAFDL_					0	0	0		ENSG00000274102|ENST00000614722|OR4M2;ENSG00000182974|ENST00000332663|OR4M2B	ENSG00000274102|ENST00000614722|OR4M2	ENSG00000274102|ENST00000614722|OR4M2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2626953125	2	511.783179	1021.5518	-0.89454	-0.00045781	-3.1518	-0.0016131	-4.0464	-0.0020709	511.78181553727154	85.319	1.0382	85.345	84.62	85.659	0.025536					66	24	4	0	0	0	0.024412	1	10556	10556		40.573	13.88	1	1934500			44467	9183	30755	30806	49894	49894					0.0418905299944754
LLTWLTPEV	9	Unmodified	_LLTWLTPEV_					0	0	0		ENSG00000105989|ENST00000265441|WNT2	ENSG00000105989|ENST00000265441|WNT2	ENSG00000105989|ENST00000265441|WNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.81298828125	2	536.307875	1070.6012	-1.4308	-0.00076732	-1.5618	-0.00083758	-2.9925	-0.0016049	536.3069327413102	51.893	0.30224	51.985	51.857	52.16	0.091938					14	7	2	0	0	0	0.024323	1	5444	5444		53.351	0	1	460170			44468	2744	30756	30807	49895	49895					0.06872084279893897
LLTWLTPEV	9	Unmodified	_LLTWLTPEV_					0	0	0		ENSG00000105989|ENST00000265441|WNT2	ENSG00000105989|ENST00000265441|WNT2	ENSG00000105989|ENST00000265441|WNT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.307875	1070.6012	-0.58672	-0.00031466	-3.1964	-0.0017142	-3.7831	-0.0020289	536.3061316377015	52.02	0.72798	52.02	51.906	52.634	0	-0.05798	-6.1879E-05	NaN	51.335	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412750			44469	2744	30756	30807							0.06872084279893897
LLTWLTPEV	9	Unmodified	_LLTWLTPEV_					0	0	0		ENSG00000105989|ENST00000265441|WNT2	ENSG00000105989|ENST00000265441|WNT2	ENSG00000105989|ENST00000265441|WNT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.307875	1070.6012	-0.36733	-0.000197	-3.5619	-0.0019102	-3.9292	-0.0021072	536.3059987972501	52.377	0.60764	52.229	51.881	52.488	-0.14735	0.15127	-0.0004539	NaN	51.335	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373150			44470	2744	30756	30807							0.06872084279893897
LLTYLCNHCQC	11	Unmodified	_LLTYLCNHCQC_					0	0	0			REV__ENST00000445430.5_1_3:195412816-195412894:+|nuORF	REV__ENST00000445430.5_1_3:195412816-195412894:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.52923583984375	3	437.527854	1309.56173	0.030478	1.3335E-05	2.8207	0.0012341	2.8512	0.0012475	437.52901442469056	31.885	0.57911	31.727	31.412	31.991	-0.15772					35	13	3	0	0	0	1.0327	1	2141	2141		29.551	1.9068	1	1402000	+		44471	32614	30757	30808	49896	49896					-0.08066450329101826
LLTYLISE	8	Unmodified	_LLTYLISE_					0	0	0		ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	ENSG00000119812|ENST00000238823|FAM98A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2538757324219	2	476.273501	950.532449	-0.22802	-0.0001086	-1.3014	-0.00061982	-1.5294	-0.00072842	476.27251725315307	22.122	0.48181	21.92	21.712	22.194	-0.20199					10	9	2	0	0	0	0.027866	1	759	759		40.573	3.4135	1	18418			44472	3769	30758	30809	49897	49897					0.05520419980200586
LLVAAQRQDRL	11	Unmodified	_LLVAAQRQDRL_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B;ENST00000592937.1_1_19:2476275-2476629:+|nuORF	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.882568359375	2	641.883136	1281.75172	0.55581	0.00035677	-1.6557	-0.0010628	-1.0999	-0.00070601	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	1.0238	1	12269	12269		31.53	1.2121	1	3344500			44473	2091	30759	30810	49898	49898					0.12211243991396259
LLVADRTR	8	Unmodified	_LLVADRTR_					0	0	0			REV__ENST00000325103.10_1_10:100205097-100206676:-|nuORF	REV__ENST00000325103.10_1_10:100205097-100206676:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2878723144531	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	1.0572	1	12038	12038		28.254	1.4582	1	51888000	+		44474	30384	30760	30811	49899	49899					0.0874858239999412
LLVADRTR	8	Unmodified	_LLVADRTR_					0	0	0			REV__ENST00000325103.10_1_10:100205097-100206676:-|nuORF	REV__ENST00000325103.10_1_10:100205097-100206676:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2877502441406	2	472.287808	942.561064	0.20114	9.4994E-05	-0.67758	-0.00032001	-0.47644	-0.00022502	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	1.0574	1	11979	11979		25.45	2.4077	1	52660000	+		44475	30384	30760	30811	49900	49900					0.0874858239999412
LLVADRTR	8	Unmodified	_LLVADRTR_					0	0	0			REV__ENST00000325103.10_1_10:100205097-100206676:-|nuORF	REV__ENST00000325103.10_1_10:100205097-100206676:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2877502441406	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.0572	1	11625	11625		28.254	1.5614	1	42478000	+		44476	30384	30760	30811	49901	49901					0.0874858239999412
LLVAGPRAQ	9	Unmodified	_LLVAGPRAQ_					0	0	0		ENST00000439129.5_2_22:42487043-42487446:+|nuORF	ENST00000439129.5_2_22:42487043-42487446:+|nuORF	ENST00000439129.5_2_22:42487043-42487446:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.78509521484375	2	462.784902	923.55525	-0.89185	-0.00041274	-0.053802	-2.4899E-05	-0.94566	-0.00043764	462.7849063720639	43.586	1.1809	43.367	43.068	44.249	-0.21938					83	32	4	0	0	0	0.44472	1	4027	4027		62.978	5.5258	1	15075000			44477	14325	30761	30812	49902	49902					0.09041483888313451
LLVAKILC	8	Unmodified	_LLVAKILC_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3;nc|ENSG00000141873|Q9BRY0-2|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3;nc|ENSG00000141873|Q9BRY0-2|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7748718261719	2	436.785524	871.556496	-0.63184	-0.00027598	-0.81657	-0.00035666	-1.4484	-0.00063264	436.78513866821993	90.236	0.21056	90.236	90.173	90.384	0					7	4	3	0	0	0	0.027866	1	11409	11409		21.702	1.2205	1	103550			44478	5526;18342	30762	30813	49903	49903					0.1155798193285591
LLVAKYLDN	9	Unmodified	_LLVAKYLDN_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.8270874023438	2	524.8055	1047.59645	0.78902	0.00041408	-1.1757	-0.00061701	-0.38667	-0.00020293	524.806313574054	98.036	0.62635	98.034	97.724	98.351	-0.0020752					20	14	2	0	0	0	0.024263	1	12418	12418		51.335	7.2187	1	85295	+		44479	22907	30763	30814	49904	49904					0.07455200137133033
LLVALRGN	8	Unmodified	_LLVALRGN_					0	0	0		ENST00000547357.5_1_12:82752311-82853681:+|nuORF;ENST00000548569.5_1_12:82752311-82782582:+|nuORF;ENSG00000127720|ENST00000248306|METTL25	ENST00000547357.5_1_12:82752311-82853681:+|nuORF	ENST00000547357.5_1_12:82752311-82853681:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2618713378906	2	428.27417	854.533787	-0.59648	-0.00025546	0.43227	0.00018513	-0.16421	-7.0328E-05	428.27435688938107	90.355	0.28592	90.2	90.062	90.348	-0.1552					15	6	3	0	0	0	0.027866	1	11047	11047		19.36	0	1	407410			44480	16529	30764	30815	49905	49905					0.10070098859614518
LLVALRGN	8	Unmodified	_LLVALRGN_					0	0	0		ENST00000547357.5_1_12:82752311-82853681:+|nuORF;ENST00000548569.5_1_12:82752311-82782582:+|nuORF;ENSG00000127720|ENST00000248306|METTL25	ENST00000547357.5_1_12:82752311-82853681:+|nuORF	ENST00000547357.5_1_12:82752311-82853681:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2618408203125	2	428.27417	854.533787	0.60364	0.00025852	2.4391	0.0010446	3.0427	0.0013031	428.27564406643404	90.185	0.65913	90.047	89.749	90.408	-0.13824					37	15	3	0	0	0	0.027866	1	11064	11064		24.203	0	1	352650			44481	16529	30764	30815	49906	49906					0.10070098859614518
LLVALSLLL	9	Unmodified	_LLVALSLLL_					0	0	0		ENST00000533146.5_1_15:40979267-40987285:-|nuORF	ENST00000533146.5_1_15:40979267-40987285:-|nuORF	ENST00000533146.5_1_15:40979267-40987285:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.8334045410156	2	477.833529	953.652505	-0.88629	-0.0004235	1.2692	0.00060646	0.3829	0.00018296	477.83392867359913	105.5	0.89895	105.37	105.26	106.16	-0.13099					63	33	3	0	0	0	0.72268	1	13151	13151		44.531	2.0566	1	1015200			44482	16310	30765	30816	49907	49907					0.173824530446268
LLVALSYS	8	Unmodified	_LLVALSYS_					0	0	0			REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.25738525390625	2	433.255111	864.49567	0.082102	3.5571E-05	-1.5381	-0.00066638	-1.456	-0.00063081	433.25533421616046	102.79	2.2075	102.8	102.41	104.62	0.0054245					176	55	6	0	0	0	0.85409	2	13102	13102;13148		54.765	1.4582	1	219000000	+		44483	27015	30766	30817	49908;49909	49908					0.05800168154280527
LLVALSYS	8	Unmodified	_LLVALSYS_					0	0	0			REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	REV__nc|ENSG00000176383|Q9C0J1-2|B3GNT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.2554931640625	2	433.255111	864.49567	0.068768	2.9794E-05	-0.16359	-7.0878E-05	-0.094827	-4.1084E-05	433.25539260258705	102.94	2.6221	102.81	102.45	105.08	-0.12783					130	72	2	0	0	0	1.0017	1	12856	12856		37.028	0	1	236480000	+		44484	27015	30766	30817	49910	49910					0.05800168154280527
LLVAMAID	8	Unmodified	_LLVAMAID_					0	0	0		ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2583312988281	2	423.243689	844.472826	-0.34728	-0.00014699	3.9074	0.0016538	3.5602	0.0015068	423.2455766464571	41.972	0.20044	41.84	41.753	41.953	-0.13219					8	5	2	0	0	0	0.027866	1	3811	3811		4.6817	0	1	83589			44485	8627	30767	30818	49911	49911					0.044368257651626664
LLVAMERSL	9	Unmodified	_LLVAMERSL_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3140869140625	2	516.299527	1030.5845	-0.26179	-0.00013516	0.089523	4.622E-05	-0.17226	-8.8939E-05	516.298958505597	97.919	0.63591	97.919	97.639	98.275	0					17	14	2	0	0	0	0.02435	1	12542	12542		19.997	5.1319	1	291790			44486	7116	30768	30819	49912	49912					0.07043260122304673
LLVAPVASLAR	11	Unmodified	_LLVAPVASLAR_					0	0	0			REV__ENSG00000054803|ENST00000064571|CBLN4	REV__ENSG00000054803|ENST00000064571|CBLN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.3543090820312	2	555.355691	1108.69683	0.52818	0.00029333	-4.3682	-0.0024259	-3.84	-0.0021326	555.3531407219169	99.771	0.71594	99.636	99.184	99.9	-0.13526					46	17	4	0	0	0	1.0017	1	12381	12381		36.447	3.6343	1	852080	+		44487	20195	30769	30820	49913	49913					0.14682857190791765
LLVAQINPLVG	11	Unmodified	_LLVAQINPLVG_					0	0	0			REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.8533325195312	2	568.855524	1135.69649	-0.46285	-0.00026329	-3.4276	-0.0019498	-3.8904	-0.0022131	568.8534480412821	101.18	1.7422	101.17	100.85	102.59	-0.0054398					103	39	5	0	0	0	1.0054	1	12869	12869		35.618	3.6634	1	8581000	+		44488	25764	30770	30821	49914	49914					0.13407437470914374
LLVAQPAPLLE	11	Unmodified	_LLVAQPAPLLE_					0	0	0			REV__ENSG00000174326|ENST00000574600|SLC16A11	REV__ENSG00000174326|ENST00000574600|SLC16A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.35302734375	2	582.355357	1162.69616	-0.28496	-0.00016595	-3.1107	-0.0018115	-3.3956	-0.0019775	582.3534070628981	102.44	0.86188	102.26	101.97	102.84	-0.17178					81	20	6	0	0	0	1.0292	1	12755	12755		30.318	6.795	1	8672600	+		44489	26853	30771	30822	49915	49915					0.1213201775105972
LLVATLMR	8	Unmodified	_LLVATLMR_					0	0	0			REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.7882385253906	2	458.786056	915.557558	0.65247	0.00029934	1.8977	0.00087062	2.5501	0.00117	458.7868940578265	92.184	1.9062	92.193	91.701	93.608	0.0094147					162	45	6	0	0	0	1.0239	1	11657	11657		33.516	1.5607	1	27672000	+		44490	33562	30772	30823	49916	49916					0.09640196301768356
LLVATLMR	8	Unmodified	_LLVATLMR_					0	0	0			REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.78759765625	2	458.786056	915.557558	-1.5662	-0.00071855	4.0915	0.0018771	2.5253	0.0011586	458.7879005444892	92.294	1.8204	92.151	91.661	93.481	-0.14356					148	42	6	0	0	0	1.0239	1	11359	11359		33.516	1.5607	1	24204000	+		44491	33562	30772	30823	49917	49917					0.09640196301768356
LLVATLMR	8	Unmodified	_LLVATLMR_					0	0	0			REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.78692626953125	2	458.786056	915.557558	-0.2269	-0.0001041	2.7104	0.0012435	2.4835	0.0011394	458.7872764164579	92.323	1.6929	92.2	91.76	93.453	-0.12242					146	39	6	0	0	0	0.96719	1	11349	11349		42.474	8.9589	1	20312000	+		44492	33562	30772	30823	49918	49918					0.09640196301768356
LLVATLMR	8	Unmodified	_LLVATLMR_					0	0	0			REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	REV__ENST00000485551.5_1_1:35917324-35917369:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.7874450683594	2	458.786056	915.557558	0.21652	9.9336E-05	2.3973	0.0010999	2.6138	0.0011992	458.78713516574805	92.333	1.7818	92.192	91.704	93.485	-0.14131					127	41	5	0	0	0	1.0239	1	11310	11310		33.516	0	1	18009000	+		44493	33562	30772	30823	49919	49919					0.09640196301768356
LLVATPRII	9	Unmodified	_LLVATPRII_					0	0	0			REV__PIGB|p.I237L|1|0.12|ENSG00000069943|chr15:55333922-55333922|A/C|missense_variant	REV__PIGB|p.I237L|1|0.12|ENSG00000069943|chr15:55333922-55333922|A/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3343811035156	2	498.334227	994.653902	-0.48227	-0.00024033	0.22588	0.00011256	-0.25639	-0.00012777	498.33429074647324	74.367	0.55562	74.376	74.051	74.607	0.0096512					47	12	4	0	0	0	0.64155	2	9012	9002;9012		50.025	0	1	5411700	+		44494	37372	30773	30824	49920;49921	49921					0.15636087133361798
LLVAVLVMPWK	11	Unmodified	_LLVAVLVMPWK_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.8927612304688	2	634.893595	1267.77264	-0.77889	-0.00049451	-1.1716	-0.00074386	-1.9505	-0.0012384	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	1.0054	1	12983	12983		35.618	19.145	1	1853200			44495	9372	30774	30825	49922	49922					0.1494611804669148
LLVAVLVMPWK	11	Unmodified	_LLVAVLVMPWK_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.892578125	2	634.893595	1267.77264	-0.8856	-0.00056226	-0.93038	-0.00059069	-1.816	-0.0011529	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.0614	1	13034	13034		21.96	0.27414	1	1402800			44496	9372	30774	30825	49923	49923					0.1494611804669148
LLVAVLVMPWK	11	Unmodified	_LLVAVLVMPWK_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.8928833007812	2	634.893595	1267.77264	0.12287	7.8009E-05	-2.2441	-0.0014248	-2.1213	-0.0013468	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0054	1	13021	13021		35.618	4.0885	1	1729500			44497	9372	30774	30825	49924	49924					0.1494611804669148
LLVAVRLHT	9	Unmodified	_LLVAVRLHT_					0	0	0		ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.3270568847656	2	511.329476	1020.6444	-0.31632	-0.00016175	-4.2996	-0.0021985	-4.6159	-0.0023602	511.32720987540836	96.338	0.93864	96.182	95.794	96.733	-0.15646					55	21	4	0	0	0	0.92825	2	11899	11884;11899		30.504	7.1258	1	818320			44498	14124	30775	30826	49925;49926	49926					0.13490318847846083
LLVCDVNKI	9	Unmodified	_LLVCDVNKI_					0	0	0			REV__nc|ENSG00000099810|Q13126-7|MTAP	REV__nc|ENSG00000099810|Q13126-7|MTAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.7960205078125	2	508.794078	1015.5736	0.11828	6.0178E-05	3.7332	0.0018994	3.8515	0.0019596	508.795892717671	102.66	0.5137	102.48	102.17	102.68	-0.17034					23	11	3	0	0	0	0.87448	1	12735	12735		34.173	1.3601	1	240760	+		44499	19286	30776	30827	49927	49927					0.06643857748008486
LLVCGILRA	9	Unmodified	_LLVCGILRA_					0	0	0			REV__ENST00000591762.1_1_17:74379488-74379602:+|nuORF	REV__ENST00000591762.1_1_17:74379488-74379602:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.29595947265625	2	479.29933	956.584108	0.85284	0.00040877	-4.0459	-0.0019392	-3.1931	-0.0015304	479.29716956746876	69.973	1.4403	69.973	69.547	70.987	0					69	38	4	0	0	0	0.60698	1	8431	8431		52.299	0	1	6097800	+		44500	35730	30777	30828	49928	49928					0.10407885193103539
LLVCVFSSK	9	Unmodified	_LLVCVFSSK_					0	0	0			REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.9019470214844	2	498.283346	994.552139	-0.25982	-0.00012946	4.2111	0.0020983	3.9513	0.0019689	498.28525638045505	43.25	0.99088	43.138	42.854	43.845	-0.11253					57	26	3	0	0	0	0.024337	1	4060	4060		41.427	13.544	1	1747400	+		44501	19249	30778	30829	49929	49929					0.054644727193021936
LLVCVFSSK	9	Unmodified	_LLVCVFSSK_					0	0	0			REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.90191650390625	2	498.283346	994.552139	-0.56646	-0.00028226	4.3087	0.002147	3.7423	0.0018647	498.28533458212564	43.439	0.95736	43.202	42.879	43.836	-0.23737					61	25	4	0	0	0	0.024418	1	4066	4066		37.812	7.3079	1	1552900	+		44502	19249	30778	30829	49930	49930					0.054644727193021936
LLVCVFSSK	9	Unmodified	_LLVCVFSSK_					0	0	0			REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.283346	994.552139	-0.23385	-0.00011652	2.7316	0.0013611	2.4978	0.0012446	498.28419726360954	43.142	0.43693	43.142	42.859	43.296	0	-0.03547	-0.001399	NaN	41.427	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500220	+		44503	19249	30778	30829							0.054644727193021936
LLVCVFSSK	9	Unmodified	_LLVCVFSSK_					0	0	0			REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.283346	994.552139	-0.41737	-0.00020797	2.6348	0.0013129	2.2175	0.0011049	498.2843755036636	43.253	0.50867	43.113	42.885	43.393	-0.13929	-0.064069	-0.0014954	NaN	41.427	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399690	+		44504	19249	30778	30829							0.054644727193021936
LLVCVFSSK	9	Unmodified	_LLVCVFSSK_					0	0	0			REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	REV__CASP3|p.R111K|1|0.28|ENSG00000164305|chr4:184631916-184631916|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.283346	994.552139	0.50313	0.0002507	1.7497	0.00087184	2.2528	0.0011225	498.2838350933253	43.228	0.3297	43.259	43.046	43.376	0.030827	0.081518	-0.0023776	NaN	41.427	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430700	+		44505	19249	30778	30829							0.054644727193021936
LLVDAKGL	8	Unmodified	_LLVDAKGL_					0	0	0			REV__ENST00000581487.1_1_16:66655025-66655589:-|nuORF	REV__ENST00000581487.1_1_16:66655025-66655589:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.7616271972656	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	1.0338	1	11026	11026		31.955	5.1588	1	53595000	+		44506	35534	30779	30830	49931	49931					0.09099874391188223
LLVDFDSKS	9	Unmodified	_LLVDFDSKS_					0	0	0		ENST00000264381.7_1_3:165548589-165548652:-|nuORF	ENST00000264381.7_1_3:165548589-165548652:-|nuORF	ENST00000264381.7_1_3:165548589-165548652:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2710571289062	2	512.27149	1022.52843	-1.3044	-0.00066821	0.14151	7.249E-05	-1.1629	-0.00059572	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.96322	1	13319	13319		27.882	0	1	5095800			44507	11561	30780	30831	49932	49932					0.018063304864767815
LLVDFLKYVMI	11	Unmodified	_LLVDFLKYVMI_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|318|3|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|318|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.93280029296875	3	451.933204	1352.77778	1.0325	0.00046661	-2.2291	-0.0010074	-1.1967	-0.00054081	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0499	1	12296	12296		25.126	2.5644	1	1299700	+		44508	36238	30781	30832	49933	49933					0.1155037711866953
LLVDINPPISL	11	Unmodified	_LLVDINPPISL_					0	0	0			REV__ENSG00000204574|ENST00000326195|ABCF1	REV__ENSG00000204574|ENST00000326195|ABCF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.35888671875	2	597.360639	1192.70673	-0.034733	-2.0748E-05	-3.4904	-0.002085	-3.5251	-0.0021058	597.3583204343577	98.637	1.8036	98.633	98.096	99.899	-0.0038834					117	41	4	0	0	0	1.013	1	12520	12520		33.922	12.236	1	2975900	+		44509	28619	30782	30833	49934	49934					0.11808000405494568
LLVDKDVDE	9	Unmodified	_LLVDKDVDE_					0	0	0			REV__ENSG00000226174|ENST00000451127|TEX22	REV__ENSG00000226174|ENST00000451127|TEX22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2579956054688	2	523.274229	1044.53391	-1.0499	-0.00054937	1.6156	0.00084538	0.56569	0.00029601	523.2744702349955	23.929	0.30016	23.929	23.78	24.08	0					9	6	2	0	0	0	0.024484	1	983	983		37.812	5.8567	1	37983	+		44510	28870	30783	30834	49935	49935					0.013420092782780557
LLVDPASHT	9	Unmodified	_LLVDPASHT_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7580871582031	2	476.758549	951.502546	-0.30085	-0.00014343	-0.97006	-0.00046248	-1.2709	-0.00060592	476.75800283223526	103.64	1.2436	103.51	102.91	104.16	-0.12783					67	32	3	0	0	0	0.83071	1	12939	12939		37.159	6.6555	1	2423600			44511	4913	30784	30835	49936	49936					0.024854810348415413
LLVDPVTSI	9	Unmodified	_LLVDPVTSI_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1;nc|ENSG00000070601|Q5SYB0-2|FRMPD1;nc|ENSG00000070601|Q5SYB0-3|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.78564453125	2	478.786776	955.558998	0.40351	0.0001932	-2.361	-0.0011304	-1.9575	-0.00093722	478.7856310301666	91.166	1.1754	91.177	90.825	92	0.011276					60	27	4	0	0	0	0.70186	1	11479	11479		45.952	5.1738	1	2311200			44512	1429	30785	30836	49937	49937					0.0794410887151571
LLVEANPI	8	Unmodified	_LLVEANPI_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7592468261719	2	434.760561	867.506569	0.66526	0.00028923	-3.4121	-0.0014835	-2.7469	-0.0011942	434.7589968686671	86.998	1.8354	86.856	86.147	87.982	-0.14218					104	43	4	0	0	0	1.0239	1	10570	10570		33.516	3.0119	1	5508400	+		44513	22118	30786	30837	49938	49938					0.06751570528570028
LLVEGLSLHTL	11	Unmodified	_LLVEGLSLHTL_					0	0	0		VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8568725585938	2	597.858264	1193.70197	-0.78863	-0.00047149	-2.1219	-0.0012686	-2.9105	-0.0017401	598.358780099829	90.777	2.8733	90.76	88.87	91.743	-0.016716					174	68	3	0	0	0	1.018	1	11507	11507		32.812	0	1	2218500			44514	38142	30787	30838	49939	49939					0.11287116262769814
LLVEGLSLHTL	11	Unmodified	_LLVEGLSLHTL_					0	0	0		VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8545532226562	2	597.858264	1193.70197	-0.39778	-0.00023782	-2.4142	-0.0014433	-2.8119	-0.0016811	598.3585984414767	90.781	2.8287	90.792	88.918	91.747	0.011276					183	67	3	0	0	0	0.9749	1	11461	11461		42.396	5.237	1	2105300			44515	38142	30787	30838	49940	49940					0.11287116262769814
LLVEGLSLHTL	11	Unmodified	_LLVEGLSLHTL_					0	0	0		VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	VIPR2|p.Y226S|1|0.07|ENSG00000106018|chr7:159036823-159036823|T/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8565063476562	2	597.858264	1193.70197	-0.21005	-0.00012558	-3.4027	-0.0020343	-3.6127	-0.0021599	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0119	1	11540	11540		34.173	3.6689	1	5598500			44516	38142	30787	30838	49941	49941					0.11287116262769814
LLVEHQAI	8	Unmodified	_LLVEHQAI_					0	0	0		ENST00000526129.5_1_1:76198579-76227103:+|nuORF;EGFR-ACADM|1|fusion;ENSG00000117054|ENST00000370841|ACADM;nc|ENSG00000117054|P11310-2|ACADM	ENST00000526129.5_1_1:76198579-76227103:+|nuORF	ENST00000526129.5_1_1:76198579-76227103:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7724609375	2	461.77146	921.528367	0.37183	0.0001717	1.8717	0.00086429	2.2435	0.001036	461.7720283962125	98.317	1.1137	98.327	98.021	99.135	0.010239					49	25	3	0	0	0	1.0574	1	12517	12517		25.45	1.2474	1	743680			44517	685	30788	30839	49942	49942					0.064463752771303
LLVEIAKAI	9	Unmodified	_LLVEIAKAI_					0	0	0			REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	REV__ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77099609375	2	485.320786	968.627018	-0.19871	-9.6439E-05	0.053816	2.6118E-05	-0.1449	-7.0321E-05	485.32063786519313	72.735	0.70111	72.735	72.333	73.034	0					29	16	2	0	0	0	0.024294	1	8831	8831		55.504	18.345	1	144720	+		44518	25578	30789	30840	49943	49943					0.14144978522176643
LLVEKTCLN	9	Unmodified	_LLVEKTCLN_					0	0	0			REV__ENST00000521950.1_1_8:108296908-108334178:-|nuORF	REV__ENST00000521950.1_1_8:108296908-108334178:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2288818359375	2	516.791535	1031.56852	-0.28878	-0.00014924	-2.1391	-0.0011055	-2.4279	-0.0012547	516.7904390040511	61.931	0.46871	61.718	61.544	62.012	-0.21375					16	11	2	0	0	0	0.024389	1	6959	6959		60.118	31.864	1	76885	+		44519	34329	30790	30841	49944	49944					0.05399553885399655
LLVERLGM	8	Unmodified	_LLVERLGM_					0	0	0		nc|ENSG00000197620|Q8TE69-2|EOLA1;ENSG00000197620|ENST00000393985|EOLA1;ENSG00000197021|ENST00000370406|EOLA2	nc|ENSG00000197620|Q8TE69-2|EOLA1	nc|ENSG00000197620|Q8TE69-2|EOLA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7774963378906	2	465.775688	929.536823	0.30012	0.00013979	3.7382	0.0017412	4.0383	0.001881	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0574	1	9899	9899		26.796	0	1	1281300			44520	9945	30791	30842	49945	49945					0.06923605922111165
LLVESLNHRI	10	Unmodified	_LLVESLNHRI_					0	0	0			REV__ENSG00000102900|ENST00000308159|NUP93	REV__ENSG00000102900|ENST00000308159|NUP93	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.3558349609375	2	597.35368	1192.69281	-0.68039	-0.00040643	2.0382	0.0012175	1.3578	0.00081107	597.3540221839667	103.66	1.264	103.66	103.14	104.4	0.0031357					78	31	5	0	0	0	1.1197	1	13253	13253		20.947	0.95016	1	534480	+		44521	21337	30792	30843	49946	49946					0.10416767697097384
LLVFAVPS	8	Unmodified	_LLVFAVPS_					0	0	0			REV__ENST00000403096.7_1_2:3653453-3653594:+|nuORF	REV__ENST00000403096.7_1_2:3653453-3653594:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.51324462890625	2	423.260197	844.50584	-0.57279	-0.00024244	-3.2744	-0.0013859	-3.8472	-0.0016284	423.25865020494297	31.93	0.51681	31.93	31.669	32.186	0					18	12	2	0	0	0	0.027866	1	2159	2159		28.254	4.0515	1	65754	+		44522	31885	30793	30844	49947	49947					0.07736775879516244
LLVFAVPS	8	Unmodified	_LLVFAVPS_					0	0	0			REV__ENST00000403096.7_1_2:3653453-3653594:+|nuORF	REV__ENST00000403096.7_1_2:3653453-3653594:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	423.260197	844.50584	0.08137	3.4441E-05	-4.8163	-0.0020386	-4.7349	-0.0020041	423.2580128544208	32.565	0.87203	32.328	31.998	32.87	-0.23667	0.082878	0.00012091	NaN	28.254	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1340500	+		44523	31885	30793	30844							0.07736775879516244
LLVFAVPS	8	Unmodified	_LLVFAVPS_					0	0	0			REV__ENST00000403096.7_1_2:3653453-3653594:+|nuORF	REV__ENST00000403096.7_1_2:3653453-3653594:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	423.260197	844.50584	0.044326	1.8762E-05	-4.8964	-0.0020725	-4.8521	-0.0020537	423.2579897036222	32.511	0.86319	32.353	31.904	32.767	-0.15772	0.10824	5.3117E-05	NaN	28.254	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1251300	+		44524	31885	30793	30844							0.07736775879516244
LLVFCIKKI	9	Unmodified	_LLVFCIKKI_					0	0	0		ENST00000367142.4_1_1:205682466-205682574:-|nuORF	ENST00000367142.4_1_1:205682466-205682574:-|nuORF	ENST00000367142.4_1_1:205682466-205682574:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8246459960938	2	538.848656	1075.68276	-0.98076	-0.00052848	-1.2657	-0.000682	-2.2464	-0.0012105	538.8483861983508	48.227	0.2386	48.227	48.174	48.413	0					10	6	2	0	0	0	0.024517	1	4904	4904		35.201	10.998	1	97899			44525	12844	30794	30845	49948	49948					0.14794488438155895
LLVFGFPLL	9	Unmodified	_LLVFGFPLL_					0	0	0			REV__ENSG00000171054|ENST00000338616|OR13H1	REV__ENSG00000171054|ENST00000338616|OR13H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8184509277344	2	509.820421	1017.62629	-0.074488	-3.7976E-05	-4.1449	-0.0021131	-4.2194	-0.0021511	509.8181687725682	75.061	1.4837	74.802	74.451	75.934	-0.25887					70	38	4	0	0	0	0.14584	1	9174	9174		100.36	0	1	4516300	+		44526	26536	30795	30846	49949	49949					0.11818183873151611
LLVFIIKGY	9	Unmodified	_LLVFIIKGY_					0	0	0			REV__nc|ENSG00000250361|P06028-2|GYPB	REV__nc|ENSG00000250361|P06028-2|GYPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.3399047851562	2	533.338978	1064.6634	0.36136	0.00019273	1.9145	0.0010211	2.2758	0.0012138	533.3398352886462	97.929	0.92052	97.927	97.635	98.556	-0.0020752					55	21	4	0	0	0	0.96855	2	12414	12414;12437		26.796	0	1	1074400	+		44527	26440	30796	30847	49950;49951	49950					0.13365855418919637
LLVFIIKGY	9	Unmodified	_LLVFIIKGY_					0	0	0			REV__nc|ENSG00000250361|P06028-2|GYPB	REV__nc|ENSG00000250361|P06028-2|GYPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.33984375	2	533.338978	1064.6634	0.56165	0.00029955	1.3262	0.0007073	1.8878	0.0010069	533.339545522493	98.05	0.94133	97.914	97.56	98.501	-0.13626					56	22	3	0	0	0	0.96121	1	12147	12147		28.254	10.889	1	1206100	+		44528	26440	30796	30847	49952	49952					0.13365855418919637
LLVFIIKGY	9	Unmodified	_LLVFIIKGY_					0	0	0			REV__nc|ENSG00000250361|P06028-2|GYPB	REV__nc|ENSG00000250361|P06028-2|GYPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.3396606445312	2	533.338978	1064.6634	0.73667	0.00039289	1.0271	0.00054781	1.7638	0.0009407	533.3394494791199	98.037	1.0001	97.912	97.462	98.463	-0.12413					57	23	3	0	0	0	0.97516	1	12161	12161		25.45	0	1	782840	+		44529	26440	30796	30847	49953	49953					0.13365855418919637
LLVFIIKGY	9	Unmodified	_LLVFIIKGY_					0	0	0			REV__nc|ENSG00000250361|P06028-2|GYPB	REV__nc|ENSG00000250361|P06028-2|GYPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.339599609375	2	533.338978	1064.6634	-0.41683	-0.00022231	2.166	0.0011552	1.7491	0.00093288	533.3399660774493	98.104	0.8865	97.939	97.578	98.465	-0.16521					55	21	3	0	0	0	1.0325	2	12157	12145;12157		13.775	0.81615	1	925780	+		44530	26440	30796	30847	49954;49955	49955					0.13365855418919637
LLVFPPAF	8	Unmodified	_LLVFPPAF_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2539978027344	2	452.270564	902.526576	-0.7651	-0.00034603	1.8427	0.00083341	1.0776	0.00048738	452.27285985122904	20.451	0.33183	20.451	20.372	20.704	0					11	6	3	0	0	0	0.027866	1	569	569		16.705	2.0409	1	61771			44531	3097	30797	30848	49956	49956					0.07141366259179449
LLVFPWSI	8	Unmodified	_LLVFPWSI_					0	0	0			REV__ENSG00000174437|ENST00000539276|ATP2A2	REV__ENSG00000174437|ENST00000539276|ATP2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79058837890625	2	487.789121	973.56369	0.29152	0.0001422	2.7499	0.0013414	3.0414	0.0014836	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.94001	1	10379	10379		46.766	3.1404	1	2091900	+		44532	26861	30798	30849	49957	49957					0.0758503780494948
LLVFVTEVV	9	Unmodified	_LLVFVTEVV_					0	0	0		nc|ENSG00000140391|O60637-3|TSPAN3;ENSG00000140391|ENST00000267970|TSPAN3;ENST00000560715.5_1_15:77348115-77348262:-|nuORF	nc|ENSG00000140391|O60637-3|TSPAN3	nc|ENSG00000140391|O60637-3|TSPAN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.81243896484375	2	509.812793	1017.61103	-0.02137	-1.0895E-05	0.045963	2.3432E-05	0.024593	1.2538E-05	509.81265950198656	104.28	1.2317	104.28	103.98	105.21	-0.0032196					92	35	4	0	0	0	0.60698	1	13350	13350		52.299	2.2746	1	1365200			44533	5406	30799	30850	49958	49958					0.10293272285298372
LLVFWEIV	8	Unmodified	_LLVFWEIV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8038024902344	2	509.802229	1017.5899	0.50937	0.00025968	2.3622	0.0012042	2.8715	0.0014639	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	1.0017	2	10641	10641;10908		37.028	3.6709	1	2754700			44534	4330	30800	30851	49959;49960	49959					0.08181306976416636
LLVFWEIV	8	Unmodified	_LLVFWEIV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8038330078125	2	509.802229	1017.5899	-0.39701	-0.0002024	3.3116	0.0016882	2.9146	0.0014858	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	0.95417	1	10649	10649		44.531	2.1349	1	3182000			44535	4330	30800	30851	49961	49961					0.08181306976416636
LLVFWEIV	8	Unmodified	_LLVFWEIV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8038024902344	2	509.802229	1017.5899	0.60396	0.0003079	2.032	0.0010359	2.6359	0.0013438	509.80316832379725	83.279	2.7899	83.067	81.496	84.286	-0.21159					160	64	4	0	0	0	1.0017	1	10035	10035		37.028	7.1869	1	1089300			44536	4330	30800	30851	49962	49962					0.08181306976416636
LLVFWTIL	8	Unmodified	_LLVFWTIL_					0	0	0		ENST00000555259.5_1_14:31112578-31185169:+|nuORF	ENST00000555259.5_1_14:31112578-31185169:+|nuORF	ENST00000555259.5_1_14:31112578-31185169:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.8141174316406	2	502.812596	1003.61064	0.69855	0.00035124	1.4917	0.00075004	2.1902	0.0011013	502.81346829160253	96.243	1.9146	96.12	95.685	97.599	-0.12305					125	43	5	0	0	0	1.0472	1	11919	11919		29.842	0	1	14776000			44537	16680	30801	30852	49963	49963					0.10897897356085195
LLVGASVLLP	10	Unmodified	_LLVGASVLLP_					0	0	0			REV__ENSG00000147571|ENST00000276571|CRH	REV__ENSG00000147571|ENST00000276571|CRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2985534667969	2	491.320786	980.627018	-0.54676	-0.00026863	0.68151	0.00033484	0.13476	6.6209E-05	491.32097348714706	60.505	0.94959	60.292	60	60.95	-0.21339					55	24	4	0	0	0	0.03519	1	6942	6942		68.485	7.5128	1	2921300	+		44538	24564	30802	30853	49964	49964					0.13592978522194699
LLVGDNRIVE	10	Unmodified	_LLVGDNRIVE_					0	0	0			REV__ENSG00000138768|ENST00000514213|USO1	REV__ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.3025512695312	2	564.324588	1126.63462	-0.17993	-0.00010154	-3.1942	-0.0018026	-3.3741	-0.0019041	564.8224762105139	86.706	0.12909	86.661	86.554	86.683	-0.045105					4	2	2	0	0	0	0.03519	1	10852	10852		27.882	4.8398	1	38102	+		44539	23895	30803	30854	49965	49965					0.07637086051818187
LLVGHMPVM	9	Unmodified	_LLVGHMPVM_					0	0	0		nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	nc|ENSG00000104728|O15013-7|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.77099609375	2	498.772091	995.529629	-0.83576	-0.00041686	-1.144	-0.00057059	-1.9797	-0.00098744	498.7714294292241	105.46	1.4997	105.33	104.64	106.14	-0.13099					137	54	4	0	0	0	0.93795	1	13107	13107		29.842	3.1486	1	3947400			44540	2591	30804	30855	49966	49966					0.03168550050042995
LLVGIIPN	8	Unmodified	_LLVGIIPN_					0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.7688293457031	2	419.773471	837.53239	0.18207	7.6427E-05	-0.42479	-0.00017832	-0.24272	-0.00010189	419.7732695721214	58.224	0.69183	58.315	57.979	58.671	0.091217					27	18	2	0	0	0	0.027866	1	6552	6552		20.482	0	1	148880	+		44541	26016	30805	30856	49967	49967					0.1071246477083605
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3402099609375	2	533.338978	1064.6634	-0.5182	-0.00027637	2.7661	0.0014752	2.2479	0.0011989	533.3403481687069	97.908	0.97088	97.908	97.549	98.52	0					61	22	4	0	0	0	0.75282	1	12483	12483		42.474	1.6963	1	1189600	+		44542	27909	30806	30857	49968	49968					0.13365855418874162
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.3399658203125	2	533.338978	1064.6634	-0.011237	-5.9933E-06	2.1969	0.0011717	2.1856	0.0011657	533.3400481509884	97.915	0.8876	97.925	97.551	98.439	0.010231					58	20	4	0	0	0	0.85941	3	12460	12448;12460;12486		35.201	10.998	1	1273400	+		44543	27909	30806	30857	49969;49970;49971	49970					0.13365855418874162
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.340087890625	2	533.338978	1064.6634	0.36136	0.00019273	1.9145	0.0010211	2.2758	0.0012138	533.3398352886462	97.929	0.92052	97.927	97.635	98.556	-0.0020752					55	21	4	0	0	0	0.96855	1	12449	12449		26.796	2.5934	1	1074400	+		44544	27909	30806	30857	49972	49972					0.13365855418874162
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.3405151367188	2	533.338978	1064.6634	0.56165	0.00029955	1.3262	0.0007073	1.8878	0.0010069	533.339545522493	98.05	0.94133	97.914	97.56	98.501	-0.13626					56	22	3	0	0	0	0.60698	2	12117	12117;12127		52.299	6.3472	1	1206100	+		44545	27909	30806	30857	49973;49974	49973					0.13365855418874162
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.3388671875	2	533.338978	1064.6634	0.73667	0.00039289	1.0271	0.00054781	1.7638	0.0009407	533.3394494791199	98.037	1.0001	97.912	97.462	98.463	-0.12413					57	23	3	0	0	0	0.85941	2	12128	12128;12139		35.201	8.4046	1	782840	+		44546	27909	30806	30857	49975;49976	49975					0.13365855418874162
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	533.338978	1064.6634	0.36136	0.00019273	1.9145	0.0010211	2.2758	0.0012138	533.3398352886462	97.929	0.92052	97.927	97.635	98.556	-0.0020752	0.0062807	-0.00010806	NaN	52.299	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074400	+		44547	27909	30806	30857							0.13365855418874162
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	533.338978	1064.6634	0.73667	0.00039289	1.0271	0.00054781	1.7638	0.0009407	533.3394494791199	98.037	1.0001	97.912	97.462	98.463	-0.12413	-0.008318	-0.0010546	NaN	52.299	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782840	+		44548	27909	30806	30857							0.13365855418874162
LLVGKYLFI	9	Unmodified	_LLVGKYLFI_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	533.338978	1064.6634	-0.41683	-0.00022231	2.166	0.0011552	1.7491	0.00093288	533.3399660774493	98.104	0.8865	97.939	97.578	98.465	-0.16521	0.017882	0.00016021	NaN	52.299	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	925780	+		44549	27909	30806	30857							0.13365855418874162
LLVGLSHEE	9	Unmodified	_LLVGLSHEE_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7718200683594	2	498.771657	995.528761	-0.83576	-0.00041686	-0.27345	-0.00013639	-1.1092	-0.00055324	498.7714294292241	105.46	1.4997	105.33	104.64	106.14	-0.13099					137	54	4	0	0	0	0.88411	1	13126	13126		33.516	0.70317	1	3947400			44550	4705	30807	30858	49977	49977					0.03081750206331435
LLVGNQISL	9	Unmodified	_LLVGNQISL_					0	0	0		ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2774658203125	2	478.792392	955.570232	-0.29069	-0.00013918	0.38624	0.00018493	0.095549	4.5748E-05	478.7923238465232	84.823	0.57959	84.75	84.468	85.047	-0.072769					18	13	2	0	0	0	0.024523	1	10560	10560		15.642	3.435	1	104650			44551	6892	30808	30859	49978	49978					0.09066930965661868
LLVGNQISL	9	Unmodified	_LLVGNQISL_					0	0	0		ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.792392	955.570232	1.1341	0.00054302	-1.0769	-0.00051562	0.057228	2.74E-05	478.791638359561	84.771	0.53598	84.771	84.587	85.123	0	0.0084932	-0.0007575	NaN	15.642	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115980			44552	6892	30808	30859							0.09066930965661868
LLVGNQISL	9	Unmodified	_LLVGNQISL_					0	0	0		ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.792392	955.570232	-0.31345	-0.00015008	0.18617	8.9134E-05	-0.12729	-6.0945E-05	478.7922572493337	84.742	0.49837	84.767	84.579	85.078	0.025536	0.0046139	0.00045201	NaN	15.642	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138060			44553	6892	30808	30859							0.09066930965661868
LLVGQNRN	8	Unmodified	_LLVGQNRN_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.26300048828125	2	457.264333	912.514114	0.64915	0.00029683	-0.50586	-0.00023131	0.14329	6.5523E-05	457.26408262448706	84.2	1.7699	83.997	83.608	85.378	-0.20329					87	41	3	0	0	0	1.0133	1	10151	10151		35.201	0	1	724170	+		44554	28092	30809	30860	49979	49979					0.054357228488470355
LLVGRLWVVFI	11	Unmodified	_LLVGRLWVVFI_					0	0	0		ENSG00000140675|ENST00000330498|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.9483642578125	3	438.948064	1313.82236	-0.24421	-0.0001072	2.7698	0.0012158	2.5256	0.0011086	438.9490828818225	16.845	0.2422	16.637	16.519	16.762	-0.20777					7	4	2	0	0	0	1.09	1	101	101		14.086	1.1285	1	54564			44555	5435	30810	30861	49980	49980					0.17800569047017234
LLVGVDIN	8	Unmodified	_LLVGVDIN_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.7515869140625	2	421.752736	841.490919	-0.43887	-0.0001851	-2.1596	-0.0009108	-2.5984	-0.0010959	421.751737766717	89.682	1.1123	89.682	89.228	90.34	0					59	26	4	0	0	0	1.0284	1	11328	11328		32.812	0	1	907600			44556	6969	30811	30862	49981	49981					0.06383284011519663
LLVHAISIN	9	Unmodified	_LLVHAISIN_					0	0	0		nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	nc|ENSG00000067842|Q16720-8|ATP2B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7612609863281	2	490.300384	978.586216	-0.45427	-0.00022273	1.0263	0.00050321	0.57206	0.00028048	490.30071875322847	86.596	1.1516	86.619	86.029	87.181	0.023422					41	26	3	0	0	0	0.024412	1	10836	10836		24.203	6.8378	1	173250			44557	1372	30812	30863	49982	49982					0.0960663720256889
LLVHARIGAA	10	Unmodified	_LLVHARIGAA_					0	0	0			REV__ENST00000354230.7_1_7:99698082-99698214:-|nuORF	REV__ENST00000354230.7_1_7:99698082-99698214:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.80859375	2	510.819276	1019.624	0.38737	0.00019788	-3.5562	-0.0018166	-3.1689	-0.0016187	510.8173409108117	21.935	0.52477	21.746	21.482	22.007	-0.18894					18	10	2	0	0	0	0.03519	1	743	743		17.365	0	1	111440	+		44558	30751	30813	30864	49983	49983					0.11497148188027495
LLVHFLLPLL	10	Unmodified	_LLVHFLLPLL_					0	0	0		ENST00000245479.2_1_17:70121293-70121485:+|nuORF	ENST00000245479.2_1_17:70121293-70121485:+|nuORF	ENST00000245479.2_1_17:70121293-70121485:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3430786132812	2	589.389003	1176.76345	-1.3706	-0.00080781	1.403	0.00082693	0.03244	1.9119E-05	589.3906759068599	93.002	0.17036	92.997	92.862	93.032	-0.0042038					5	3	2	0	0	0	0.03519	1	11769	11769		12.959	6.2236	1	25171			44559	11313	30814	30865	49984	49984					0.1821409275271435
LLVHGNNKVMA	11	Unmodified	_LLVHGNNKVMA_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	598.334433	1194.65431	-1.0251	-0.00061336	0.63296	0.00037872	-0.39214	-0.00023463	598.3348718097183	91.249	0.37666	91.126	90.994	91.371	-0.12341					16	8	2	0	0	0	0.024724	1	11202	11202		27.882	0	1	83912			44560	1061	30815	30866	49985	49985					0.0647713879091043
LLVHPLMAL	9	Unmodified	_LLVHPLMAL_					0	0	0		ENST00000397149.3_1_9:33056112-33056181:-|nuORF	ENST00000397149.3_1_9:33056112-33056181:-|nuORF	ENST00000397149.3_1_9:33056112-33056181:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.253173828125	2	503.809531	1005.60451	-0.21091	-0.00010626	2.8104	0.0014159	2.5995	0.0013096	503.81100870662345	44.672	0.93445	44.708	44.273	45.207	0.0369					50	26	3	0	0	0	0.024475	1	4219	4219		29.842	6.7991	1	169090			44561	13584	30816	30867	49986	49986					0.10193055852914767
LLVHVLLICVF	11	Unmodified	_LLVHVLLICVF_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7	REV__ENSG00000121281|ENST00000673801|ADCY7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	634.8930053710938	2	634.893595	1267.77264	0.034626	2.1984E-05	-1.9143	-0.0012154	-1.8797	-0.0011934	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	1.0219	1	13338	13338		31.955	0	1	2042800	+		44562	22588	30817	30868	49987	49987					0.14946118046714219
LLVHVLLICVF	11	Unmodified	_LLVHVLLICVF_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7	REV__ENSG00000121281|ENST00000673801|ADCY7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	635.3884887695312	2	634.893595	1267.77264	-0.8856	-0.00056226	-0.93038	-0.00059069	-1.816	-0.0011529	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.0781	1	13065	13065		17.365	0	1	1402800	+		44563	22588	30817	30868	49988	49988					0.14946118046714219
LLVIEEIIP	9	Unmodified	_LLVIEEIIP_					0	0	0		ENSG00000147432|ENST00000289957|CHRNB3;ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.766357421875	2	519.825901	1037.63725	-1.1406	-0.00059293	0.95109	0.0004944	-0.18954	-9.8529E-05	519.8258958693278	47.52	0.52203	47.579	47.247	47.769	0.059097					33	15	3	0	0	0	0.024183	1	4714	4714		60.294	2.4827	1	216150			44564	5965	30818	30869	49989	49989					0.11993541456763523
LLVIRPQMH	9	Unmodified	_LLVIRPQMH_					0	0	0			REV__nc|ENSG00000205726|Q15811-5|ITSN1	REV__nc|ENSG00000205726|Q15811-5|ITSN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8301391601562	2	553.828786	1105.64302	-0.79306	-0.00043922	2.9265	0.0016208	2.1334	0.0011816	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	0.78069	1	10970	10970		40.573	1.7665	1	6583300	+	+	44565	37088	30819	30870	49990	49990					0.09442361487435846
LLVIRPQMH	9	Unmodified	_LLVIRPQMH_					0	0	0			REV__nc|ENSG00000205726|Q15811-5|ITSN1	REV__nc|ENSG00000205726|Q15811-5|ITSN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8302612304688	2	553.828786	1105.64302	-0.33257	-0.00018418	2.3882	0.0013226	2.0556	0.0011384	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.78069	2	10989	10965;10989		40.573	3.1879	1	6921700	+	+	44566	37088	30819	30870	49991;49992	49992					0.09442361487435846
LLVIRPQMH	9	Unmodified	_LLVIRPQMH_					0	0	0			REV__nc|ENSG00000205726|Q15811-5|ITSN1	REV__nc|ENSG00000205726|Q15811-5|ITSN1	MSMS	OPSCC_40_ClassI_Rep-2	5	553.8296508789062	2	553.828786	1105.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.341	1	86.199	85.699	86.699	-0.14217								0	0	0	0.67604	1	10488	10488		25.45	8.0852	1		+	+	44567	37088	30819	30870	49993	49993					0.09442361487435846
LLVITYPLM	9	Unmodified	_LLVITYPLM_					0	0	0		nc|ENSG00000173085|Q96H96-3|COQ2;ENSG00000173085|ENST00000647002|COQ2;nc|ENSG00000173085|Q96H96-6|COQ2;nc|ENSG00000173085|Q96H96-5|COQ2;nc|ENSG00000173085|Q96H96-4|COQ2	nc|ENSG00000173085|Q96H96-3|COQ2	nc|ENSG00000173085|Q96H96-3|COQ2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8167724609375	2	531.817021	1061.61949	0.30294	0.00016111	-0.91839	-0.00048842	-0.61545	-0.00032731	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.97516	2	10842	10842;10853		25.45	2.4077	1	3405600			44568	8339	30820	30871	49994;49995	49994					0.09114502930242452
LLVIWMKY	8	Unmodified	_LLVIWMKY_					0	0	0			REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF	REV__ENST00000309964.8_1_4:56294512-56294707:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2987060546875	2	533.311906	1064.60926	-1.3002	-0.00069343	3.0449	0.0016239	1.7447	0.00093047	533.3133139614575	61.345	0.37441	61.169	60.914	61.289	-0.1761					18	8	3	0	0	0	0.027866	1	6836	6836		37.028	15.069	1	192400	+		44569	30174	30821	30872	49996	49996					0.07953939995672954
LLVKEKKID	9	Unmodified	_LLVKEKKID_					0	0	0			REV__nc|ENSG00000112640|Q14738-3|PPP2R5D	REV__nc|ENSG00000112640|Q14738-3|PPP2R5D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3497924804688	2	543.350074	1084.6856	-1.264	-0.00068679	1.038	0.00056401	-0.22597	-0.00012278	543.3505035540428	25.778	0.63754	25.744	25.515	26.152	-0.034258					39	14	4	0	0	0	0.27161	1	1247	1247		79.451	7.5735	1	604770	+		44570	22017	30822	30873	49997	49997					0.14664035096643602
LLVKKASS	8	Unmodified	_LLVKKASS_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2751159667969	2	423.276378	844.538203	-0.082883	-3.5082E-05	-3.2282	-0.0013664	-3.3111	-0.0014015	423.27490422918225	87.973	0.84181	87.795	87.405	88.247	-0.17875					58	20	4	0	0	0	1.0574	1	10721	10721		24.203	5.8783	1	1819200	+		44571	20205	30823	30874	49998	49998					0.10971563282521402
LLVKKASS	8	Unmodified	_LLVKKASS_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2751159667969	2	423.276378	844.538203	0.13071	5.5328E-05	-3.0954	-0.0013102	-2.9647	-0.0012549	423.274939460662	110.55	0.42538	110.42	110.14	110.57	-0.12524					34	13	3	0	0	0	1.0574	1	13579	13579		9.4706	0	1	122380	+		44572	20205	30823	30874	49999	49999					0.10971563282521402
LLVKKASS	8	Unmodified	_LLVKKASS_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.2754211425781	2	423.276378	844.538203	0.45132	0.00019103	-3.763	-0.0015928	-3.3117	-0.0014017	423.2746798193047	87.952	0.92746	87.816	87.262	88.189	-0.13613					56	22	4	0	0	0	1.0574	3	10693	10693;10715;10728		27.882	5.8783	1	1674900	+		44573	20205	30823	30874	50000;50001;50002	50000					0.10971563282521402
LLVKKASS	8	Unmodified	_LLVKKASS_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.275146484375	2	423.276378	844.538203	0.36652	0.00015514	-3.7091	-0.00157	-3.3425	-0.0014148	423.2747144936764	87.899	0.9429	87.762	87.289	88.232	-0.13744					51	22	3	0	0	0	1.0574	1	10707	10707		24.203	6.8378	1	872390	+		44574	20205	30823	30874	50003	50003					0.10971563282521402
LLVKQNKTY	9	Unmodified	_LLVKQNKTY_					0	0	0		ENST00000473684.5_3_3:119149608-119149695:-|nuORF	ENST00000473684.5_3_3:119149608-119149695:-|nuORF	ENST00000473684.5_3_3:119149608-119149695:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8302612304688	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	0.55828	1	11394	11394		55.504	5.9682	1	4870500			44575	15015	30824	30875	50004	50004					0.10094577919812764
LLVKQNKTY	9	Unmodified	_LLVKQNKTY_					0	0	0		ENST00000473684.5_3_3:119149608-119149695:-|nuORF	ENST00000473684.5_3_3:119149608-119149695:-|nuORF	ENST00000473684.5_3_3:119149608-119149695:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8306274414062	2	553.832049	1105.64954	0.36892	0.00020432	-4.1653	-0.0023069	-3.7964	-0.0021026	553.8295563012404	101.52	0.97879	101.39	101.09	102.07	-0.13156					52	22	4	0	0	0	0.96322	1	12613	12613		27.882	1.0861	1	618770			44576	15015	30824	30875	50005	50005					0.10094577919812764
LLVKRLYTT	9	Unmodified	_LLVKRLYTT_					0	0	0			REV__ENST00000503671.2_1_4:110737056-110740318:+|nuORF	REV__ENST00000503671.2_1_4:110737056-110740318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.8302001953125	2	553.850242	1105.68593	0.3309	0.00018327	-3.1138	-0.0017246	-2.7829	-0.0015413	553.8479516136501	88.886	0.21275	88.902	88.71	88.923	0.015907					5	4	2	0	0	0	0.024506	1	11123	11123		23.042	0	1	39270	+		44577	33962	30825	30876	50006	50006					0.13731454816502264
LLVKRLYTT	9	Unmodified	_LLVKRLYTT_					0	0	0			REV__ENST00000503671.2_1_4:110737056-110740318:+|nuORF	REV__ENST00000503671.2_1_4:110737056-110740318:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8308715820312	2	553.850242	1105.68593	0.051119	2.8312E-05	3.1987	0.0017716	3.2498	0.0017999	553.8524807867794	89.265	0.2877	89.127	89.028	89.316	-0.13761					8	6	2	0	0	0	0.024457	1	10914	10914		21.96	9.7532	1	51423	+		44578	33962	30825	30876	50007	50007					0.13731454816502264
LLVKVKVIK	9	Unmodified	_LLVKVKVIK_					0	0	0		ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.820556640625	2	520.38372	1038.75289	0.53359	0.00027767	-3.0697	-0.0015974	-2.5361	-0.0013197	520.3824334486491	80.611	0.20499	80.405	80.343	80.548	-0.20633					5	4	2	0	0	0	0.024541	1	9669	9669		12.207	9.0476	1	53368			44579	9376	30826	30877	50008	50008					0.23506110098264799
LLVKYIFTL	9	Unmodified	_LLVKYIFTL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.3530883789062	2	555.352086	1108.68962	0.4637	0.00025752	1.9279	0.0010707	2.3916	0.0013282	555.3530876150478	99.618	0.75595	99.618	99.224	99.98	0					46	17	4	0	0	0	0.92825	1	12735	12735		30.504	3.7075	1	1104100			44580	6209	30827	30878	50009	50009					0.13962124590375424
LLVKYIFTL	9	Unmodified	_LLVKYIFTL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.353759765625	2	555.352086	1108.68962	-0.21036	-0.00011683	2.8947	0.0016076	2.6843	0.0014908	555.353605243723	99.586	0.64217	99.596	99.268	99.91	0.010231					45	14	4	0	0	0	0.83071	1	12708	12708		37.159	1.9584	1	1220000			44581	6209	30827	30878	50010	50010					0.13962124590375424
LLVLALGPGE	10	Unmodified	_LLVLALGPGE_					0	0	0			REV__ENST00000356731.9_1_5:179050060-179050201:-|nuORF	REV__ENST00000356731.9_1_5:179050060-179050201:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.3368835449219	2	491.302593	980.590633	-0.1774	-8.7156E-05	0.09129	4.4851E-05	-0.086107	-4.2305E-05	491.30284580877554	82.217	0.41753	82.217	82.031	82.449	0					14	9	2	0	0	0	0.03519	1	10266	10266		24.203	10.427	1	67920	+		44582	30800	30828	30879	50011	50011					0.09956101625482461
LLVLARLPGK	10	Unmodified	_LLVLARLPGK_					0	0	0			REV__ENSG00000165794|ENST00000298681|SLC39A2	REV__ENSG00000165794|ENST00000298681|SLC39A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.2561645507812	2	540.368601	1078.72265	-1.3873	-0.00074963	0.5341	0.00028861	-0.85317	-0.00046103	540.3688476866287	48.491	0.50293	48.215	47.966	48.469	-0.27598					16	13	2	0	0	0	0.03519	1	4815	4815		12.207	8.2216	1	165740	+		44583	25927	30829	30880	50012	50012					0.18643751433069156
LLVLDAPFI	9	Unmodified	_LLVLDAPFI_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.8071594238281	2	500.807511	999.600469	0.26474	0.00013258	0.096188	4.8171E-05	0.36093	0.00018076	500.80720596841684	107.19	0.46753	107.04	106.83	107.3	-0.15772					33	17	3	0	0	0	0.75282	1	13306	13306		42.474	8.9589	1	264810	+		44584	20226	30830	30881	50013	50013					0.10065289630847474
LLVLGRRCRRA	11	Unmodified	_LLVLGRRCRRA_					0	0	0		ENST00000325954.8_2_12:120972156-120972429:+|nuORF	ENST00000325954.8_2_12:120972156-120972429:+|nuORF	ENST00000325954.8_2_12:120972156-120972429:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.2726135253906	3	438.275069	1311.80338	-0.053208	-2.332E-05	-4.1203	-0.0018058	-4.1735	-0.0018292	438.2732444854445	105.5	1.0452	105.38	104.85	105.9	-0.12444					64	30	4	0	0	0	1.0563	1	13137	13137		23.378	2.5408	1	717220			44585	12276	30831	30882	50014	50014					0.15994709204323954
LLVLHQLDSI	10	Unmodified	_LLVLHQLDSI_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;NF1-CCDC47|1|fusion;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-5|NF1	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8436279296875	2	575.845156	1149.67576	-2.0743	-0.0011945	-1.718	-0.00098928	-3.7922	-0.0021837	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.0781	1	11412	11412		35.618	0	1	5238400			44586	9914	30832	30883	50015	50015					0.10690847091291289
LLVLKTQLH	9	Unmodified	_LLVLKTQLH_					0	0	0			REV__ENSG00000182858|ENST00000330817|ALG12	REV__ENSG00000182858|ENST00000330817|ALG12	MSMS	OPSCC_39_ClassI_Rep-3	3	533.1907958984375	2	532.844959	1063.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.178	1	15.234	14.734	15.734	0.055788								0	0	0	0.73035	1	10	10		13.775	0.81615	1		+		44587	27514	30833	30884	50016	50016					0.14607472162083468
LLVLKVPES	9	Unmodified	_LLVLKVPES_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.3197021484375	2	499.318243	996.621933	0.58825	0.00029373	-0.78582	-0.00039237	-0.19757	-9.8648E-05	499.31772948015424	96.588	1.5732	96.594	96.107	97.68	0.0065079					66	35	3	0	0	0	0.43973	1	12301	12301		63.306	7.8021	1	701090			44588	3739	30834	30885	50017	50017					0.1234867465956313
LLVLKYIH	8	Unmodified	_LLVLKYIH_					0	0	0		ENST00000373109.6_1_10:73822135-73822213:-|nuORF	ENST00000373109.6_1_10:73822135-73822213:-|nuORF	ENST00000373109.6_1_10:73822135-73822213:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.2720947265625	2	499.823495	997.632438	-0.59095	-0.00029537	-4.4441	-0.0022213	-5.0351	-0.0025166	499.8214429557591	39.296	0.41133	39.073	38.891	39.302	-0.22311					24	10	4	0	0	0	0.027866	1	3339	3339		28.254	0	1	189760			44589	13069	30835	30886	50018	50018					0.1335270210464614
LLVLLHNR	8	Unmodified	_LLVLLHNR_					0	0	0			REV__ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant	REV__ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.31402587890625	2	489.316369	976.618185	-1.0508	-0.00051419	-4.0751	-0.001994	-5.126	-0.0025082	489.3142275858638	94.356	1.1901	94.218	93.834	95.024	-0.13779					78	27	5	0	0	0	1.0574	1	11609	11609		20.482	5.8177	1	1637300	+		44590	36012	30836	30887	50019	50019					0.12894049676367558
LLVLPVQSP	9	Unmodified	_LLVLPVQSP_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.3070983886719	2	483.305136	964.595718	-0.82529	-0.00039887	1.0071	0.00048673	0.18178	8.7857E-05	483.30551226965287	81.541	0.73053	81.565	81.207	81.938	0.023903					41	17	3	0	0	0	0.64155	1	10088	10088		50.025	2.1089	1	1173600	+		44591	21453	30837	30888	50020	50020					0.11200405488079923
LLVLRHLLL	9	Unmodified	_LLVLRHLLL_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.378969	1088.74339	-0.71261	-0.00038864	-3.7113	-0.0020241	-4.4239	-0.0024127	545.3765997151672	88.807	0.20973	88.636	88.505	88.714	-0.17054					6	4	2	0	0	0	0.024541	1	10825	10825		17.365	0	1	23678	+		44592	27316	30838	30889	50021	50021					0.20256341812751089
LLVLSLPLV	9	Unmodified	_LLVLSLPLV_					0	0	0			REV__ENSG00000204278|ENST00000421688|TMEM235	REV__ENSG00000204278|ENST00000421688|TMEM235	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.8330993652344	2	483.833529	965.652505	0.49221	0.00023815	-0.24271	-0.00011743	0.2495	0.00012072	483.8333069190511	103.11	0.40599	102.99	102.83	103.23	-0.12724					19	9	3	0	0	0	0.78069	1	12822	12822		40.573	1.7665	1	148640	+		44593	28584	30839	30890	50022	50022					0.1683045304461075
LLVLSRFL	8	Unmodified	_LLVLSRFL_					0	0	0		RABGGTB|p.P93Lfs*24|1|0.23|ENSG00000137955|chr1:75789324-75789324|C/-|frameshift_variant	RABGGTB|p.P93Lfs*24|1|0.23|ENSG00000137955|chr1:75789324-75789324|C/-|frameshift_variant	RABGGTB|p.P93Lfs*24|1|0.23|ENSG00000137955|chr1:75789324-75789324|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.801025390625	2	480.81567	959.616788	-0.31641	-0.00015213	-2.1263	-0.0010223	-2.4427	-0.0011745	480.8147779106772	94.341	0.28778	94.204	93.965	94.253	-0.13779					14	6	3	0	0	0	0.027866	1	11583	11583		25.45	0	1	115060			44594	19021	30840	30891	50023	50023					0.13536415587611828
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		ENSG00000106991|ENST00000373203|ENG;nc|ENSG00000106991|P17813-2|ENG;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENSG00000106991|ENST00000373203|ENG	ENSG00000106991|ENST00000373203|ENG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.343505859375	2	589.344989	1176.67542	-2.3876	-0.0014071	-1.1613	-0.0006844	-3.5489	-0.0020915	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0238	1	11555	11555		31.53	1.0262	1	4758600			44595	2822	30841	30892	50024	50024					0.09415427371413898
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		ENSG00000106991|ENST00000373203|ENG;nc|ENSG00000106991|P17813-2|ENG;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENSG00000106991|ENST00000373203|ENG	ENSG00000106991|ENST00000373203|ENG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3430786132812	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0238	1	11794	11794		31.53	0	1	13724000			44596	2822	30841	30892	50025	50025					0.09415427371413898
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		ENSG00000106991|ENST00000373203|ENG;nc|ENSG00000106991|P17813-2|ENG;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENSG00000106991|ENST00000373203|ENG	ENSG00000106991|ENST00000373203|ENG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3433227539062	2	589.344989	1176.67542	-1.6034	-0.00094497	-2.0205	-0.0011907	-3.6239	-0.0021357	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	0.98904	1	11081	11081		39.253	1.4413	1	5827400			44597	2822	30841	30892	50026	50026					0.09415427371413898
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		ENSG00000106991|ENST00000373203|ENG;nc|ENSG00000106991|P17813-2|ENG;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENSG00000106991|ENST00000373203|ENG	ENSG00000106991|ENST00000373203|ENG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3428344726562	2	589.344989	1176.67542	-0.80911	-0.00047685	-2.3196	-0.001367	-3.1287	-0.0018439	589.3434865746038	94.967	0.64822	94.829	94.506	95.155	-0.13779					49	14	4	0	0	0	0.96599	1	11677	11677		44.377	7.9304	1	1636700			44598	2822	30841	30892	50027	50027					0.09415427371413898
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		ENSG00000106991|ENST00000373203|ENG;nc|ENSG00000106991|P17813-2|ENG;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENSG00000106991|ENST00000373203|ENG	ENSG00000106991|ENST00000373203|ENG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3436889648438	2	589.344989	1176.67542	-1.3212	-0.00077864	-2.2086	-0.0013016	-3.5297	-0.0020802	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	0.9728	1	11140	11140		42.864	9.3487	1	5175100			44599	2822	30841	30892	50028	50028					0.09415427371413898
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		ENSG00000106991|ENST00000373203|ENG;nc|ENSG00000106991|P17813-2|ENG;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENSG00000106991|ENST00000373203|ENG	ENSG00000106991|ENST00000373203|ENG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3427124023438	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0017	1	11533	11533		36.447	2.2742	1	17343000			44600	2822	30841	30892	50029	50029					0.09415427371413898
LLVLVHLLT	9	Unmodified	_LLVLVHLLT_					0	0	0		ENST00000426595.1_1_7:55979573-55979666:+|nuORF	ENST00000426595.1_1_7:55979573-55979666:+|nuORF	ENST00000426595.1_1_7:55979573-55979666:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26361083984375	2	510.844428	1019.6743	-0.68631	-0.0003506	0.17516	8.9479E-05	-0.51115	-0.00026112	511.3460484035051	81.775	0.25723	81.632	81.441	81.698	-0.14248					8	5	2	0	0	0	0.024386	1	9829	9829		42.474	0	1	14294			44601	14089	30842	30893	50030	50030					0.16525257793159653
LLVLVLVLLV	10	Unmodified	_LLVLVLVLLV_					0	0	0		nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	nc|ENSG00000127838|Q8N490-3|PNKD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.326904296875	2	547.401579	1092.7886	-0.57755	-0.00031615	-0.20039	-0.00010969	-0.77794	-0.00042585	547.4015491162907	41.468	0.13542	41.345	41.294	41.43	-0.12317					5	3	2	0	0	0	0.03519	1	3721	3721		3.6843	0	1	37351			44602	18252	30843	30894	50031	50031					0.24592147555244992
LLVLVNLHS	9	Unmodified	_LLVLVNLHS_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7714538574219	2	504.316035	1006.61752	-0.45995	-0.00023196	0.89781	0.00045278	0.43786	0.00022082	504.81845419145543	49.077	0.1777	48.924	48.792	48.97	-0.15277					6	4	2	0	0	0	0.024443	1	5013	5013		26.796	0	1	53280			44603	1845	30844	30895	50032	50032					0.11447210236656247
LLVMAVLPL	9	Unmodified	_LLVMAVLPL_					0	0	0			REV__nc|ENSG00000063015|Q53EL9-2|SEZ6	REV__nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2662048339844	2	484.814282	967.614011	0.43716	0.00021194	3.8118	0.001848	4.2489	0.0020599	484.8161205854587	66.97	1.2372	66.721	66.673	67.91	-0.24839					44	30	2	0	0	0	0.024389	1	7857	7857		39.021	0	1	404760	+		44604	20268	30845	30896	50033	50033					0.12890824138446533
LLVMESGTF	9	Unmodified	_LLVMESGTF_					0	0	0			REV__ENSG00000169488|ENST00000305051|OR4K15	REV__ENSG00000169488|ENST00000305051|OR4K15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3190002441406	2	498.757161	995.499769	1.1551	0.00057613	-0.047591	-2.3736E-05	1.1075	0.0005524	498.75674554759854	96.747	0.44141	96.747	96.484	96.926	-3.0518E-05					16	9	2	0	0	0	0.024386	1	12258	12258		42.474	6.8562	1	70160	+		44605	26370	30846	30897	50034	50034					0.0018388958569630631
LLVMGVFDDDD	11	Unmodified	_LLVMGVFDDDD_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.20733642578125	3	413.525161	1237.55365	-0.59848	-0.00024749	0.96713	0.00039993	0.36865	0.00015245	413.52564941140196	22.578	0.36436	22.392	22.236	22.6	-0.18539					10	7	2	0	0	0	0.024757	1	787	787		17.167	0	1	33507			44606	10221	30847	30898	50035	50035					-0.055619827732471094
LLVMGWRKS	9	Unmodified	_LLVMGWRKS_					0	0	0		ENST00000249442.10_1_2:177191615-177193069:+|nuORF	ENST00000249442.10_1_2:177191615-177193069:+|nuORF	ENST00000249442.10_1_2:177191615-177193069:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.281982421875	2	545.315512	1088.61647	0.1769	9.6467E-05	1.4264	0.00077784	1.6033	0.0008743	545.315536457158	51.048	0.33684	50.867	50.647	50.984	-0.18071					10	8	2	0	0	0	0.024466	1	5199	5199		25.45	10.117	1	361280			44607	11341	30848	30899	50036	50036					0.07570672596102668
LLVMKALSVG	10	Unmodified	_LLVMKALSVG_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251741-251975:+|nuORF;ENST00000529679.1_1_11:251741-252597:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7811889648438	2	515.820095	1029.62564	0.63285	0.00032644	-4.0009	-0.0020637	-3.3681	-0.0017373	515.8178277377966	71.018	1.3522	70.804	70.461	71.813	-0.21425					60	32	3	0	0	0	0.03519	1	8374	8374		32.812	0	1	2488500			44608	9458	30849	30900	50037	50037					0.11201021161787139
LLVMRSPP	8	Unmodified	_LLVMRSPP_					0	0	0			REV__ENST00000366472.5_1_1:249119294-249120038:-|nuORF	REV__ENST00000366472.5_1_1:249119294-249120038:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.22503662109375	2	456.770406	911.526258	-0.0090798	-4.1474E-06	-1.5263	-0.00069718	-1.5354	-0.00070133	456.76861160478103	52.302	0.95129	52.118	51.524	52.475	-0.18404					28	24	2	0	0	0	0.027866	1	5353	5353		57.811	25.856	1	233020	+		44609	30971	30850	30901	50038	50038					0.06695623267683004
LLVMSKAKR	9	Unmodified	_LLVMSKAKR_					0	0	0		ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3035888671875	2	523.331162	1044.64777	-0.32249	-0.00016877	2.8722	0.0015031	2.5497	0.0013343	523.3323228559478	87.42	0.37645	87.241	86.903	87.28	-0.17875					13	8	3	0	0	0	0.024539	1	10627	10627		20.947	11.764	1	62840			44610	2197	30851	30902	50039	50039					0.1272324563019538
LLVNDMVVD	9	Unmodified	_LLVNDMVVD_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2886047363281	2	509.267893	1016.52123	-1.0672	-0.00054347	1.0213	0.00052011	-0.045881	-2.3366E-05	509.2682614222805	61.983	0.69149	61.983	61.492	62.183	0					57	18	6	0	0	0	0.024477	1	7196	7196		27.882	11.409	1	5651600			44611	1112;18045	30852	30903	50040	50040					0.013632746144025987
LLVNDNPDP	9	Unmodified	_LLVNDNPDP_					0	0	0		TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant	TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.32568359375	2	498.753464	995.492375	0.052489	2.6179E-05	0.32271	0.00016095	0.3752	0.00018713	498.7534732850631	63.77	0.86691	63.519	63.156	64.023	-0.25141					54	23	3	0	0	0	0.024313	1	7449	7449		60.118	28.163	1	850430			44612	2574	30853	30904	50041	50041					-0.005551266903921714
LLVNDNPDP	9	Unmodified	_LLVNDNPDP_					0	0	0		TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant	TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3249206542969	2	498.753464	995.492375	1.6375	0.00081671	-1.3155	-0.0006561	0.32203	0.00016061	498.75262757262476	63.488	1.0035	63.542	63.016	64.019	0.054104					63	27	3	0	0	0	0.023655	1	7363	7363		69.628	23.676	1	979560			44613	2574	30853	30904	50042	50042					-0.005551266903921714
LLVNDNPDP	9	Unmodified	_LLVNDNPDP_					0	0	0		TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant	TRPS1|p.C525Lfs*5|1|0.71|ENSG00000104447|chr8:115604356-115604357|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.753464	995.492375	-0.18465	-9.2096E-05	-1.2331	-0.00061503	-1.4178	-0.00070713	498.7530832125339	63.967	0.45652	63.709	63.46	63.916	-0.25824	0.14482	-0.00065703	NaN	69.628	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99168			44614	2574	30853	30904							-0.005551266903921714
LLVNKLYE	8	Unmodified	_LLVNKLYE_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.2962951660156	2	496.294768	990.574983	-0.55176	-0.00027383	2.392	0.0011871	1.8402	0.0009133	496.29576749336945	66.918	0.48649	66.673	66.545	67.031	-0.24517					21	14	2	0	0	0	1.0574	1	7694	7694		13.775	2.2643	1	1130600	+		44615	23606	30854	30905	50043	50043					0.0793181510841805
LLVPDRINGT	10	Unmodified	_LLVPDRINGT_					0	0	0		nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000048740|O95319-4|CELF2	nc|ENSG00000048740|O95319-4|CELF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.8175659179688	2	549.319306	1096.62406	0.75373	0.00041404	-3.311	-0.0018188	-2.5573	-0.0014048	549.3174448773781	99.74	0.56215	99.616	99.234	99.796	-0.12458					46	14	4	0	0	0	1.1286	1	12397	12397		25.574	1.3713	1	437000			44616	1120	30855	30906	50044	50044					0.0796110339738334
LLVPGDILI	9	Unmodified	_LLVPGDILI_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5;ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.80712890625	2	476.807511	951.600469	0.69297	0.00033041	-0.37679	-0.00017965	0.31619	0.00015076	476.8071060785484	102.56	0.55478	102.43	102.15	102.71	-0.12931					28	12	3	0	0	0	0.44472	1	12726	12726		62.978	12.954	1	438550			44617	9631	30856	30907	50045	50045					0.12273289630866202
LLVPGPIPFL	10	Unmodified	_LLVPGPIPFL_					0	0	0			REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.3399658203125	2	533.338978	1064.6634	0.36136	0.00019273	1.9145	0.0010211	2.2758	0.0012138	533.3398352886462	97.929	0.92052	97.927	97.635	98.556	-0.0020752					55	21	4	0	0	0	1.1309	1	12425	12425		26.796	0	1	1074400	+		44618	25868	30857	30908	50046	50046					0.133658554188969
LLVPGPIPFL	10	Unmodified	_LLVPGPIPFL_					0	0	0			REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.3407592773438	2	533.338978	1064.6634	0.73667	0.00039289	1.0271	0.00054781	1.7638	0.0009407	533.3394494791199	98.037	1.0001	97.912	97.462	98.463	-0.12413					57	23	3	0	0	0	1.1309	1	12148	12148		26.796	2.5934	1	782840	+		44619	25868	30857	30908	50047	50047					0.133658554188969
LLVPGPIPFL	10	Unmodified	_LLVPGPIPFL_					0	0	0			REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.3397216796875	2	533.338978	1064.6634	-0.41683	-0.00022231	2.166	0.0011552	1.7491	0.00093288	533.3399660774493	98.104	0.8865	97.939	97.578	98.465	-0.16521					55	21	3	0	0	0	1.1309	1	12125	12125		26.796	0	1	925780	+		44620	25868	30857	30908	50048	50048					0.133658554188969
LLVPHVANEV	10	Unmodified	_LLVPHVANEV_					0	0	0		ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2758178710938	2	545.816399	1089.61824	-0.31473	-0.00017178	0.22846	0.0001247	-0.086262	-4.7083E-05	545.8170443564273	58.222	0.12251	57.989	57.887	58.009	-0.23363					4	2	2	0	0	0	0.03519	1	6374	6374		31.53	0	1	513660			44621	10869	30858	30909	50049	50049					0.07702004885709357
LLVPLAREV	9	Unmodified	_LLVPLAREV_					0	0	0		ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.78094482421875	2	505.32386	1008.63317	-0.81278	-0.00041072	0.91457	0.00046216	0.10179	5.1437E-05	505.32429213792534	83.36	1.1624	83.36	82.878	84.041	0					38	22	2	0	0	0	0.024427	1	10408	10408		26.693	0	1	219390			44622	11209	30859	30910	50050	50050					0.12919496753693238
LLVPLEET	8	Unmodified	_LLVPLEET_					0	0	0		MTRF1L|p.S121L|1|0.12|ENSG00000112031|chr6:152995297-152995297|G/A|missense_variant	MTRF1L|p.S121L|1|0.12|ENSG00000112031|chr6:152995297-152995297|G/A|missense_variant	MTRF1L|p.S121L|1|0.12|ENSG00000112031|chr6:152995297-152995297|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2899475097656	2	457.265676	912.516799	-0.29772	-0.00013613	-1.3963	-0.00063847	-1.694	-0.00077461	457.26504068651235	94.173	1.3343	94.179	93.85	95.185	0.0059814					69	31	4	0	0	0	0.027866	1	11952	11952		28.254	8.8943	1	1796800			44623	18000	30860	30911	50051	50051					0.05704133463132166
LLVPLGLRISN	11	Unmodified	_LLVPLGLRISN_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.8563842773438	2	597.882073	1193.74959	-0.18508	-0.00011065	1.155	0.00069057	0.96995	0.00057991	597.8827377305512	92.742	0.20789	92.601	92.454	92.662	-0.14131					5	4	2	0	0	0	0.024747	1	11370	11370		31.53	7.0106	1	27056	+		44624	22204	30861	30912	50052	50052					0.16046815253594104
LLVPPISWLL	10	Unmodified	_LLVPPISWLL_					0	0	0		nc|ENSG00000138835|P49796-7|RGS3;nc|ENSG00000138835|P49796-8|RGS3	nc|ENSG00000138835|P49796-7|RGS3	nc|ENSG00000138835|P49796-7|RGS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8428955078125	2	575.86536	1149.71617	-0.59703	-0.00034381	-2.5005	-0.00144	-3.0975	-0.0017838	575.8636088548976	89.289	0.12157	89.126	89.052	89.173	-0.1626					4	2	2	0	0	0	0.03519	1	10894	10894		30.504	1.3541	1	30513			44625	18326	30862	30913	50053	50053					0.1472981348169924
LLVPPPTLLF	10	Unmodified	_LLVPPPTLLF_					0	0	0		ENST00000311661.4_2_17:77020401-77042770:+|nuORF;ENST00000339142.6_2_17:77020254-77040169:+|nuORF	ENST00000311661.4_2_17:77020401-77042770:+|nuORF	ENST00000311661.4_2_17:77020401-77042770:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.35302734375	2	555.352086	1108.68962	0.52818	0.00029333	2.1237	0.0011794	2.6519	0.0014727	555.3531407219169	99.771	0.71594	99.636	99.184	99.9	-0.13526					46	17	4	0	0	0	1.1237	1	12347	12347		23.042	0	1	852080			44626	12083	30863	30914	50054	50054					0.13962124590375424
LLVPPPTLLF	10	Unmodified	_LLVPPPTLLF_					0	0	0		ENST00000311661.4_2_17:77020401-77042770:+|nuORF;ENST00000339142.6_2_17:77020254-77040169:+|nuORF	ENST00000311661.4_2_17:77020401-77042770:+|nuORF	ENST00000311661.4_2_17:77020401-77042770:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.352783203125	2	555.352086	1108.68962	0.80031	0.00044446	1.968	0.0010929	2.7683	0.0015374	555.3530192204877	99.747	0.68683	99.622	99.234	99.921	-0.12458					49	18	4	0	0	0	1.1237	1	12395	12395		23.042	4.7181	1	835110			44627	12083	30863	30914	50055	50055					0.13962124590375424
LLVPPRSM	8	Unmodified	_LLVPPRSM_					0	0	0			REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7721252441406	2	456.770406	911.526258	0.66934	0.00030574	3.2345	0.0014774	3.9038	0.0017831	456.7717653095696	89.004	2.3631	89.004	87.651	90.015	0					120	56	4	0	0	0	0.96769	1	11236	11236		42.396	3.59	1	3840100	+		44628	22297	30864	30915	50056	50056					0.06695623267683004
LLVPPRSM	8	Unmodified	_LLVPPRSM_					0	0	0			REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	REV__ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.7721862792969	2	456.770406	911.526258	-0.2547	-0.00011634	3.5483	0.0016208	3.2936	0.0015044	456.7722485298994	89.203	2.0073	89.075	88.281	90.288	-0.12774					107	47	4	0	0	0	1.0009	1	10890	10890		37.159	6.6555	1	3333900	+		44629	22297	30864	30915	50057	50057					0.06695623267683004
LLVQFHMI	8	Unmodified	_LLVQFHMI_					0	0	0			REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.28240966796875	2	500.786056	999.557558	-0.043038	-2.1553E-05	-3.6652	-0.0018355	-3.7083	-0.0018571	500.7842787887892	102.59	0.48068	102.46	102.19	102.67	-0.12666					21	10	3	0	0	0	0.027866	1	12761	12761		26.796	12.659	1	230070	+		44630	22050	30865	30916	50058	50058					0.05776196301769687
LLVQPGSLL	9	Unmodified	_LLVQPGSLL_					0	0	0			REV__ENST00000421025.3_1_7:63727092-63727275:+|nuORF	REV__ENST00000421025.3_1_7:63727092-63727275:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.7688903808594	2	470.29731	938.580068	-0.32095	-0.00015094	-0.0067002	-3.1511E-06	-0.32765	-0.00015409	470.297132464097	65.092	0.77124	64.858	64.607	65.379	-0.2345					35	18	3	0	0	0	0.024294	1	7424	7424		55.504	13.03	1	639550	+		44631	32174	30866	30917	50059	50059					0.10832118971052296
LLVQRLASRVN	11	Unmodified	_LLVQRLASRVN_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	634.892333984375	2	634.893503	1267.77245	0.034626	2.1984E-05	-1.7703	-0.0011239	-1.7357	-0.001102	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	1.0557	1	13304	13304		23.523	3.5259	1	2042800			44632	9530	30867	30918	50060	50060					0.14927834371087556
LLVQVVAKHGN	11	Unmodified	_LLVQVVAKHGN_					0	0	0			REV__ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	REV__ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	589.3569946289062	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.44	1	107.44	106.94	107.94	0								0	0	0	1.1407	1	13803	13803		34.173	0	1		+		44633	19147	30868	30919	50061	50061					0.11661071559728953
LLVRIGAM	8	Unmodified	_LLVRIGAM_					0	0	0		ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.7749328613281	2	436.772948	871.531344	0.28535	0.00012463	3.8657	0.0016885	4.1511	0.0018131	436.7745739222148	90.041	2.3328	90.025	89.541	91.873	-0.016708					171	55	5	0	0	0	1.0017	4	11411	11337;11349;11411;11425		37.028	7.1869	1	37030000			44634	16106	30869	30920	50062;50063;50064;50065	50064					0.09043927130301199
LLVRIGAM	8	Unmodified	_LLVRIGAM_					0	0	0		ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.77471923828125	2	436.772948	871.531344	0.53541	0.00023385	3.5556	0.001553	4.091	0.0017868	436.77442646981	90.011	2.1118	90.025	89.55	91.662	0.013443					149	50	5	0	0	0	0.95417	2	11364	11364;11378		44.531	14.69	1	34213000			44635	16106	30869	30920	50066;50067	50066					0.09043927130301199
LLVRIGAM	8	Unmodified	_LLVRIGAM_					0	0	0		ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7749328613281	2	436.772948	871.531344	0.68058	0.00029726	3.5582	0.0015541	4.2388	0.0018514	436.77442546630624	90.156	2.1751	90.018	89.532	91.707	-0.13824					144	51	5	0	0	0	0.95417	2	11058	11046;11058		44.531	14.027	1	20832000			44636	16106	30869	30920	50068;50069	50069					0.09043927130301199
LLVRKEKM	8	Unmodified	_LLVRKEKM_					0	0	0			REV__ENSG00000164089|ENST00000296486|ETNPPL	REV__ENSG00000164089|ENST00000296486|ETNPPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7666320800781	2	508.817887	1015.62122	-1.0278	-0.00052298	-3.2091	-0.0016329	-4.237	-0.0021558	508.81689178899376	22.509	0.1897	22.583	22.51	22.7	0.073954					5	3	2	0	0	0	0.027866	1	766	766		47.916	3.3845	1	14303	+		44637	25692	30870	30921	50070	50070					0.11403556738866882
LLVRLPSPQP	10	Unmodified	_LLVRLPSPQP_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3508911132812	2	560.347866	1118.68118	-0.18989	-0.0001064	3.1646	0.0017733	2.9747	0.0016669	560.3495502471608	105.99	0.56302	105.99	105.7	106.27	-0.0013123					45	19	3	0	0	0	1.0508	2	13579	13568;13579		39.253	2.8061	1	423880	+		44638	25148	30871	30922	50071;50072	50072					0.1265857067376146
LLVRLVLAL	9	Unmodified	_LLVRLVLAL_					0	0	0			REV__ENST00000473429.5_1_1:110584140-110584332:+|nuORF	REV__ENST00000473429.5_1_1:110584140-110584332:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3236389160156	2	505.360245	1008.70594	-0.80713	-0.00040789	-0.29886	-0.00015103	-1.106	-0.00055892	505.3602367823443	79.222	0.4975	79.05	78.986	79.484	-0.17226					13	11	2	0	0	0	0.024541	1	9825	9825		3.6843	0	1	149390	+		44639	33235	30872	30923	50073	50073					0.20193250547117714
LLVRNGGP	8	Unmodified	_LLVRNGGP_					0	0	0			REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF	REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.1948547363281	2	413.250695	824.486836	-0.3042	-0.00012571	0.85911	0.00035503	0.55492	0.00022932	413.25077190637074	23.53	0.63006	23.351	23.021	23.651	-0.17989					25	14	3	0	0	0	0.027866	1	898	898		8.8223	0.59103	1	91655	+		44640	35478	30873	30924	50074	50074					0.06757239308478802
LLVRNGGP	8	Unmodified	_LLVRNGGP_					0	0	0			REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF	REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	413.250695	824.486836	0.40689	0.00016815	0.60521	0.0002501	1.0121	0.00041825	413.2508546058878	23.572	0.32436	23.572	23.283	23.607	0	0.1651	0.00041194	NaN	8.8223	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40779	+		44641	35478	30873	30924							0.06757239308478802
LLVRNGGP	8	Unmodified	_LLVRNGGP_					0	0	0			REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF	REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.250695	824.486836	0.24328	0.00010054	-0.15671	-6.4759E-05	0.086578	3.5778E-05	413.2504870528839	23.579	0.59383	23.377	23.153	23.747	-0.20193	-0.029624	-0.00021778	NaN	8.8223	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54975	+		44642	35478	30873	30924							0.06757239308478802
LLVRPLLLL	9	Unmodified	_LLVRPLLLL_					0	0	0			REV__nc|ENSG00000112514|O60888-3|CUTA	REV__nc|ENSG00000112514|O60888-3|CUTA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.72412109375	2	525.375895	1048.73724	-0.42247	-0.00022195	1.3474	0.00070789	0.92492	0.00048593	525.376612021525	89.652	1.0538	89.524	88.914	89.967	-0.12775					32	24	3	0	0	0	0.024386	1	10932	10932		33.516	0	1	99214	+		44643	22007	30874	30925	50075	50075					0.21481823581234494
LLVRRRVQN	9	Unmodified	_LLVRRRVQN_					0	0	0			REV__ENSG00000163644|ENST00000608933|PPM1K	REV__ENSG00000163644|ENST00000608933|PPM1K	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	577.3668823242188	2	577.367456	1152.72036	-1.0688	-0.00061712	-0.58714	-0.000339	-1.656	-0.00095611	577.3670156537873	101.16	0.99826	101.16	100.82	101.82	0					57	22	4	0	0	0	0.90698	1	12934	12934		31.955	1.6371	1	1213500	+		44644	25611	30875	30926	50076	50076					0.1501071574798516
LLVSAYMS	8	Unmodified	_LLVSAYMS_					0	0	0			REV__ENSG00000213903|ENST00000345363|LTB4R	REV__ENSG00000213903|ENST00000345363|LTB4R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.2314758300781	2	442.233322	882.45209	0.075977	3.36E-05	-4.0201	-0.0017778	-3.9441	-0.0017442	442.23146374260193	47.263	1.5678	46.994	46.695	48.263	-0.26939					103	42	4	0	0	0	0.96719	1	4633	4633		42.474	7.2737	1	11562000	+		44645	28755	30876	30927	50077	50077					0.006162353854961111
LLVSDGAADY	10	Unmodified	_LLVSDGAADY_					0	0	0		ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2543334960938	2	512.253297	1022.49204	-0.12497	-6.4016E-05	-0.58698	-0.00030068	-0.71195	-0.0003647	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.87795	1	5867	5867		55.504	0.60963	1	54943000			44646	9629	30877	30928	50078	50078					-0.01830546410246825
LLVSGVTEF	9	Unmodified	_LLVSGVTEF_					0	0	0			REV__SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	REV__SLC20A1|p.I562Nfs*37|1|0.46|ENSG00000144136|chr2:112660461-112660462|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7711486816406	2	482.771126	963.527698	0.6276	0.00030299	-0.4081	-0.00019702	0.2195	0.00010597	482.77070121874584	95.79	0.88801	95.668	95.422	96.31	-0.12251					40	20	3	0	0	0	0.40179	1	11827	11827		65.803	2.4969	1	1178600	+		44647	24313	30878	30929	50079	50079					0.04447535837425676
LLVSILHHTV	10	Unmodified	_LLVSILHHTV_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7674560546875	2	566.347866	1130.68118	-0.17553	-9.9413E-05	3.2214	0.0018244	3.0459	0.001725	566.3494602299892	41.136	0.50716	40.908	40.729	41.236	-0.2278					17	12	2	0	0	0	0.03519	1	3592	3592		44.117	9.9443	1	146270			44648	5919	30879	30930	50080	50080					0.12106570673745409
LLVSISTEI	9	Unmodified	_LLVSISTEI_					0	0	0			REV__ENSG00000105983|ENST00000353442|LMBR1	REV__ENSG00000105983|ENST00000353442|LMBR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.791015625	2	487.792058	973.569563	-0.4369	-0.00021311	-2.5541	-0.0012459	-2.991	-0.001459	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.75282	1	10467	10467		42.474	0	1	2003200	+		44649	21585	30880	30931	50081	50081					0.08172091525932501
LLVSLESTL	9	Unmodified	_LLVSLESTL_					0	0	0		ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7915344238281	2	487.792058	973.569563	0.086791	4.2336E-05	-1.5835	-0.00077243	-1.4967	-0.0007301	487.79112874532336	94.424	1.0624	94.276	94.128	95.19	-0.14771					47	24	3	0	0	0	0.67308	1	11643	11643		47.916	1.9636	1	742330			44650	4505	30881	30932	50082	50082					0.08172091525955238
LLVSLESTL	9	Unmodified	_LLVSLESTL_					0	0	0		ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.792058	973.569563	-0.82693	-0.00040337	-0.8393	-0.0004094	-1.6662	-0.00081277	487.79150042547946	94.407	0.97299	94.269	94.051	95.024	-0.13779	-0.007687	0.00062099	NaN	47.916	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368820			44651	4505	30881	30932							0.08172091525955238
LLVSLESTL	9	Unmodified	_LLVSLESTL_					0	0	0		ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.792058	973.569563	0.43956	0.00021441	-1.991	-0.00097121	-1.5515	-0.0007568	487.79104469819026	94.407	1.2326	94.285	94.058	95.291	-0.12215	0.0084558	-0.00050263	NaN	47.916	50	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534640			44652	4505	30881	30932							0.08172091525955238
LLVSLESTLS	10	Unmodified	_LLVSLESTLS_					0	0	0		ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7634887695312	2	531.308072	1060.60159	-0.85003	-0.00045163	-2.0349	-0.0010811	-2.8849	-0.0015328	531.3068394547121	81.952	1.8022	81.812	81.277	83.079	-0.14014					69	41	3	0	0	0	0.03519	1	9870	9870		26.693	0	1	278110			44653	4505	30882	30933	50083	50083					0.07371459209116438
LLVSPRRP	8	Unmodified	_LLVSPRRP_					0	0	0			REV__ENST00000360612.4_1_22:50356889-50357390:+|nuORF	REV__ENST00000360612.4_1_22:50356889-50357390:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.3519287109375	2	469.300719	936.586885	-1.1089	-0.00052039	1.6137	0.0007573	0.50483	0.00023692	469.30133817483033	108.51	0.15495	108.38	108.29	108.44	-0.1365					9	7	2	0	0	0	0.027866	1	13402	13402		24.203	7.7296	1	303380	+		44654	30915	30883	30934	50084	50084					0.11605476642273516
LLVSPRRP	8	Unmodified	_LLVSPRRP_					0	0	0			REV__ENST00000360612.4_1_22:50356889-50357390:+|nuORF	REV__ENST00000360612.4_1_22:50356889-50357390:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	469.300719	936.586885	0.62729	0.00029439	-0.77373	-0.00036311	-0.14644	-6.8722E-05	469.30027452195657	108.56	0.13565	108.56	108.44	108.58	0.0047836	0.093866	-0.0010941	NaN	24.203	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494410	+		44655	30915	30883	30934							0.11605476642273516
LLVSSVYFLL	10	Unmodified	_LLVSSVYFLL_					0	0	0			REV__ENST00000306336.5_2_2:85835574-85835748:-|nuORF	REV__ENST00000306336.5_2_2:85835574-85835748:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2981567382812	2	577.347	1152.67945	-0.24409	-0.00014092	4.1606	0.0024021	3.9165	0.0022612	577.3481916231998	92.811	0.38161	92.666	92.576	92.958	-0.1441					10	8	2	0	0	0	0.03519	1	11413	11413		16.473	0	1	30203	+		44656	30122	30884	30935	50085	50085					0.10921516865141712
LLVSTLIN	8	Unmodified	_LLVSTLIN_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7746887207031	2	436.776211	871.537869	-0.55494	-0.00024239	-2.6294	-0.0011485	-3.1844	-0.0013909	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	1.0239	2	11050	11050;11099		33.516	6.7195	1	24367000	+		44657	23359	30885	30936	50086;50087	50086					0.09696143562678117
LLVSYNFYTMH	11	Unmodified	_LLVSYNFYTMH_					0	0	0		ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	ENSG00000174948|ENST00000389740|GPR149	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.260009765625	3	463.228679	1386.66421	-0.36818	-0.00017055	0.14502	6.7179E-05	-0.22316	-0.00010337	463.2287988918373	20.573	1.0144	20.468	19.932	20.946	-0.10477					36	20	2	0	0	0	0.024759	1	485	485		29.551	0.97402	1	32198			44658	8514	30886	30937	50088	50088					-0.013657179943720621
LLVTIMVW	8	Unmodified	_LLVTIMVW_					0	0	0			REV__ENST00000538689.4_1_8:11696323-11696383:+|nuORF	REV__ENST00000538689.4_1_8:11696323-11696383:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.79046630859375	2	487.790807	973.56706	0.33726	0.00016451	-0.79423	-0.00038742	-0.45697	-0.0002229	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0472	1	10140	10140		29.842	1.5873	1	1999500	+		44659	34717	30887	30938	50089	50089					0.0792196458729677
LLVTRVVEISI	11	Unmodified	_LLVTRVVEISI_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.39404296875	2	621.395013	1240.77547	-1.2361	-0.00076809	-2.0241	-0.0012578	-3.2602	-0.0020259	621.3936308468791	103.45	0.61192	103.32	103.09	103.7	-0.12783					38	14	4	0	0	0	1.0429	1	12899	12899		27.047	7.0505	1	482820			44660	4371	30888	30939	50090	50090					0.1647166470522734
LLVTTLASCI	10	Unmodified	_LLVTTLASCI_					0	0	0			REV__TNFRSF19|p.A179T|1|0.43|ENSG00000127863|chr13:23659139-23659139|G/A|missense_variant	REV__TNFRSF19|p.A179T|1|0.43|ENSG00000127863|chr13:23659139-23659139|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.3001708984375	2	517.301736	1032.58892	-0.80371	-0.00041576	-1.9677	-0.0010179	-2.7714	-0.0014336	517.3005652204125	93.495	0.55046	93.503	93.013	93.564	0.0077286					28	12	3	0	0	0	0.52589	1	11785	11785		85.359	8.5128	1	2495800	+		44661	37713	30889	30940	50091	50091					0.07392724545206875
LLVTVNPAP	9	Unmodified	_LLVTVNPAP_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2826232910156	2	462.28166	922.548768	0.27194	0.00012571	-0.068676	-3.1748E-05	0.20326	9.3965E-05	462.2814614836224	76.814	0.99651	76.562	75.867	76.863	-0.25162					50	23	3	0	0	0	0.59099	1	9111	9111		53.351	0	1	865930	+		44662	22849	30890	30941	50092	50092					0.0843954593693752
LLVTYFGASH	10	Unmodified	_LLVTYFGASH_					0	0	0			REV__ENST00000460307.1_1_2:70528587-70528650:-|nuORF	REV__ENST00000460307.1_1_2:70528587-70528650:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.8311157226562	2	554.295299	1106.57605	-0.68336	-0.00037878	1.1288	0.00062567	0.4454	0.00024688	554.2956432747706	90.062	0.9888	90.062	89.647	90.636	0					64	23	4	0	0	0	0.03519	1	11375	11375		27.882	0	1	732890	+		44663	32844	30891	30942	50093	50093					0.027020294773365094
LLVVCLPQN	9	Carbamidomethyl (C)	_LLVVC(Carbamidomethyl (C))LPQN_	LLVVC(1)LPQN		LLVVC(120)LPQN		0	1	0		ENST00000476724.1_1_1:45119888-45120092:-|nuORF	ENST00000476724.1_1_1:45119888-45120092:-|nuORF	ENST00000476724.1_1_1:45119888-45120092:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3255615234375	2	528.299527	1054.5845	0.62698	0.00033123	-3.6689	-0.0019383	-3.0419	-0.001607	528.2974306144224	72.077	0.61177	72.087	71.878	72.489	0.0097733					27	15	2	0	0	0	0.019237	1	8694	8694		119.22	21.748	1	202730			44664	15094	30892	30943	50094	50094	198				0.05939260122295309
LLVVCLPQN	9	Carbamidomethyl (C)	_LLVVC(Carbamidomethyl (C))LPQN_					0	1	0		ENST00000476724.1_1_1:45119888-45120092:-|nuORF	ENST00000476724.1_1_1:45119888-45120092:-|nuORF	ENST00000476724.1_1_1:45119888-45120092:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.299527	1054.5845	-0.14667	-7.7487E-05	-0.49114	-0.00025947	-0.63781	-0.00033696	528.2986653826837	72.285	0.71472	72.008	71.868	72.582	-0.2769	-0.033587	0.0023235	NaN	119.22	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130610			44665	15094	30892	30943			198				0.05939260122295309
LLVVCLPQN	9	Carbamidomethyl (C)	_LLVVC(Carbamidomethyl (C))LPQN_					0	1	0		ENST00000476724.1_1_1:45119888-45120092:-|nuORF	ENST00000476724.1_1_1:45119888-45120092:-|nuORF	ENST00000476724.1_1_1:45119888-45120092:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.299527	1054.5845	-0.17082	-9.0243E-05	-2.453	-0.0012959	-2.6238	-0.0013862	528.2979458794453	72.091	0.53525	71.885	71.577	72.113	-0.20542	-0.15644	0.00025056	NaN	119.22	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97596			44666	15094	30892	30943			198				0.05939260122295309
LLVVDAQKV	9	Unmodified	_LLVVDAQKV_					0	0	0			REV__ENST00000474221.5_1_11:293333-294746:+|nuORF	REV__ENST00000474221.5_1_11:293333-294746:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7848815917969	2	492.808042	983.601532	-0.45525	-0.00022435	-0.22717	-0.00011195	-0.68242	-0.0003363	492.8083014649411	46.691	0.20354	46.497	46.309	46.512	-0.19387					11	5	3	0	0	0	0.024405	1	4488	4488		44.117	1.7207	1	372850	+		44667	24133	30893	30944	50095	50095					0.10907503999749224
LLVVGKSI	8	Unmodified	_LLVVGKSI_					0	0	0			REV__ENST00000452544.2_2_6:157472012-157472270:+|nuORF	REV__ENST00000452544.2_2_6:157472012-157472270:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.7615966796875	2	414.781296	827.54804	1.0345	0.00042907	-1.5616	-0.00064771	-0.52711	-0.00021864	414.78064901806283	87.747	0.27567	87.747	87.491	87.767	0					11	6	2	0	0	0	0.027866	1	11048	11048		25.45	8.0852	1	434990	+		44668	32738	30894	30945	50096	50096					0.12736751287889092
LLVVIAPL	8	Unmodified	_LLVVIAPL_					0	0	0		ENST00000370713.5_1_1:82432165-82432204:+|nuORF	ENST00000370713.5_1_1:82432165-82432204:+|nuORF	ENST00000370713.5_1_1:82432165-82432204:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24066162109375	2	419.29404	836.573526	-0.81607	-0.00034217	-2.0471	-0.00085835	-2.8632	-0.0012005	419.29299224126464	37.637	0.41789	37.424	37.269	37.687	-0.21255					14	10	2	0	0	0	0.027866	1	3003	3003		16.705	0	1	60989			44669	12971	30895	30946	50097	50097					0.14870225810318516
LLVVKYPGL	9	Unmodified	_LLVVKYPGL_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7786865234375	2	501.323328	1000.6321	0.21501	0.00010779	-0.45688	-0.00022904	-0.24187	-0.00012125	501.322929755387	69.057	0.5331	68.764	68.517	69.051	-0.29267					25	13	3	0	0	0	0.024487	1	8300	8300		31.955	12.595	1	299680	+	+	44670	19530	30896	30947	50098	50098					0.13181282384800852
LLVVLLGMPG	10	Unmodified	_LLVVLLGMPG_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7037048339844	2	506.317189	1010.61982	-0.11698	-5.9228E-05	3.5237	0.0017841	3.4067	0.0017249	506.3187812424488	32.763	0.65422	32.528	32.217	32.871	-0.23547					45	15	5	0	0	0	0.03519	1	2288	2288		26.796	4.8362	1	487010	+		44671	21525	30897	30948	50099	50099					0.11493922650129207
LLVVLLGMPG	10	Unmodified	_LLVVLLGMPG_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7038269042969	2	506.317189	1010.61982	0.12858	6.5103E-05	3.3648	0.0017036	3.4933	0.0017687	506.3187907443869	32.788	0.77954	32.595	32.205	32.985	-0.19261					45	18	4	0	0	0	0.03519	1	2255	2255		26.796	2.5934	1	467170	+		44672	21525	30897	30948	50100	50100					0.11493922650129207
LLVVLLGMPG	10	Unmodified	_LLVVLLGMPG_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.70391845703125	2	506.317189	1010.61982	-0.52737	-0.00026702	3.7343	0.0018907	3.2069	0.0016237	506.3189898747355	32.78	0.60232	32.614	32.276	32.879	-0.16565					36	14	3	0	0	0	0.03519	1	2232	2232		19.36	0	1	506100	+		44673	21525	30897	30948	50101	50101					0.11493922650129207
LLVVLWIRW	9	Unmodified	_LLVVLWIRW_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	599.3770141601562	2	599.378969	1196.74339	-0.68609	-0.00041123	2.4041	0.001441	1.718	0.0010297	599.3802338408786	102.36	0.61472	102.35	102.06	102.68	-0.0054474					45	13	5	0	0	0	0.75282	1	13016	13016		42.474	10.945	1	1236000			44674	5952	30898	30949	50102	50102					0.15288341812743056
LLVVLWIRW	9	Unmodified	_LLVVLWIRW_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	599.378969	1196.74339	-0.0023505	-1.4088E-06	1.7994	0.0010785	1.7971	0.0010771	599.3799609845375	102.37	0.72133	102.24	101.99	102.71	-0.12931	-0.022559	-0.00071093	NaN	42.474	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899540			44675	5952	30898	30949							0.15288341812743056
LLVVPAIKK	9	Unmodified	_LLVVPAIKK_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7559814453125	2	490.846971	979.679388	-0.75575	-0.00037096	-3.468	-0.0017023	-4.2238	-0.0020732	490.845122568759	43.612	0.25338	43.467	43.316	43.569	-0.14471					10	6	2	0	0	0	0.024541	1	4063	4063		12.959	0	1	81202			44676	3630	30899	30950	50103	50103					0.18873561655789217
LLVVRLVR	8	Unmodified	_LLVVRLVR_					0	0	0			REV__ENSG00000132591|ENST00000254928|ERAL1	REV__ENSG00000132591|ENST00000254928|ERAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.3003845214844	2	484.342387	966.67022	-0.21823	-0.0001057	-3.8778	-0.0018782	-4.096	-0.0019839	484.3405597027617	60.154	0.18808	59.978	59.849	60.037	-0.1761					5	4	2	0	0	0	0.027866	1	6683	6683		20.482	12.251	1	80658	+		44677	23295	30900	30951	50104	50104					0.1855521309012147
LLVVTPPIL	9	Unmodified	_LLVVTPPIL_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MSMS	OPSCC_39_ClassI_Rep-1	1	482.8241882324219	2	482.825704	963.636855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.5	1	112.5	112	113	0								0	0	0	0.75445	1	14144	14144		8.8223	0	1				44678	6362	30901	30952	50105	50105					0.1535816652756239
LLVVYVPFV	9	Unmodified	_LLVVYVPFV_					0	0	0			REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.8271484375	2	524.825704	1047.63685	0.79891	0.00041929	1.558	0.00081767	2.3569	0.001237	524.8264135376637	97.953	2.024	97.951	97.456	99.48	-0.0020828					149	46	5	0	0	0	0.65391	1	12395	12395		49.211	8.6382	1	12702000	+		44679	30069	30902	30953	50106	50106					0.1149416652756372
LLVVYVPFV	9	Unmodified	_LLVVYVPFV_					0	0	0			REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8272705078125	2	524.825704	1047.63685	0.5509	0.00028913	1.4687	0.00077083	2.0196	0.00106	524.8263320992579	98.046	2.2952	97.91	97.423	99.718	-0.13625					172	55	6	0	0	0	0.93795	2	12103	12103;12136		29.842	3.0454	1	14595000	+		44680	30069	30902	30953	50107;50108	50107					0.1149416652756372
LLVVYVPFV	9	Unmodified	_LLVVYVPFV_					0	0	0			REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.8270263671875	2	524.825704	1047.63685	1.1502	0.00060363	0.89043	0.00046732	2.0406	0.001071	524.8260243870249	98.019	1.8552	97.895	97.417	99.272	-0.12414					149	45	5	0	0	0	0.99355	1	12203	12203		21.702	0	1	12738000	+		44681	30069	30902	30953	50109	50109					0.1149416652756372
LLVVYVPFV	9	Unmodified	_LLVVYVPFV_					0	0	0			REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	REV__ENST00000301923.13_2_22:40720677-40720767:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.82666015625	2	524.825704	1047.63685	-0.04084	-2.1434E-05	1.9855	0.0010421	1.9447	0.0010206	524.8266178770541	98.118	1.9254	97.953	97.397	99.322	-0.1652					155	45	5	0	0	0	0.93795	1	12129	12129		29.842	3.0454	1	11527000	+		44682	30069	30902	30953	50110	50110					0.1149416652756372
LLVWLLLI	8	Unmodified	_LLVWLLLI_					0	0	0		nc|ENSG00000290203|Q96PH1-5|NOX5;ENST00000527315.5_1_15:69323805-69349033:+|nuORF;nc|ENSG00000290203|Q96PH1-4|NOX5;nc|ENSG00000290203|Q96PH1-6|NOX5;nc|ENSG00000290203|Q96PH1-3|NOX5;nc|ENSG00000290203|Q96PH1-2|NOX5;ENSG00000255346|ENST00000388866|NOX5	nc|ENSG00000290203|Q96PH1-5|NOX5	nc|ENSG00000290203|Q96PH1-5|NOX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7980651855469	2	491.838614	981.662675	0.031293	1.5391E-05	-4.1235	-0.0020281	-4.0922	-0.0020127	491.8365189559179	52.635	0.52467	52.445	52.147	52.672	-0.18982					25	12	3	0	0	0	0.027866	1	5472	5472		10.185	0	1	322790			44683	10891	30903	30954	50111	50111					0.1711106076984379
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.63623046875	3	445.635598	1333.88496	0.56368	0.00025119	0.40242	0.00017933	0.9661	0.00043053	445.6356673138534	40.339	2.0526	40.227	39.792	41.845	-0.11222					213	56	4	0	0	0	1.1062	1	3578	3578		9.6461	1.2389	1	5905500			44684	6400	30904	30955	50112	50112					0.23137715115194624
LLVWPRNW	8	Unmodified	_LLVWPRNW_					0	0	0			REV__ENST00000500695.2_1_12:69079778-69080563:-|nuORF	REV__ENST00000500695.2_1_12:69079778-69080563:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2957763671875	2	542.308544	1082.60253	-1.0093	-0.00054734	0.37146	0.00020145	-0.63782	-0.0003459	542.8111930762002	72.169	0.37442	71.97	71.788	72.163	-0.19811					12	8	2	0	0	0	0.027866	1	8465	8465		15.636	1.4991	1	109480	+		44685	33908	30905	30956	50113	50113					0.06453763159333903
LLVYGIHV	8	Unmodified	_LLVYGIHV_					0	0	0		ENSG00000238227|ENST00000418388|TMEM250	ENSG00000238227|ENST00000418388|TMEM250	ENSG00000238227|ENST00000418388|TMEM250	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7778015136719	2	457.278921	912.543289	2.7095	0.001239	-1.0418	-0.00047639	1.6677	0.00076259	457.27854203538766	18.505	0.3417	18.505	18.284	18.626	0					10	6	2	0	0	0	0.027866	1	302	302		24.504	15.033	1	20673			44686	10752	30906	30957	50114	50114					0.08351867145131564
LLWAGLRLLP	10	Unmodified	_LLWAGLRLLP_					0	0	0			REV__ENST00000481697.5_1_7:102389635-102389809:+|nuORF	REV__ENST00000481697.5_1_7:102389635-102389809:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2539672851562	2	576.368601	1150.72265	-0.83745	-0.00048268	1.3021	0.00075049	0.46465	0.00026781	576.3693081537481	45.327	1.5405	45.116	44.715	46.255	-0.21109					77	42	2	0	0	0	0.03519	1	4457	4457		24.203	1.1603	1	264700	+		44687	33458	30907	30958	50115	50115					0.15331751433086538
LLWAGPVNA	9	Unmodified	_LLWAGPVNA_					0	0	0		nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8;nc|ENSG00000283063|P0DPF7|TRBV6-3;nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6;nc|ENSG00000211721|A0A0K0K1A5|TRBV6-5	nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8	nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7659606933594	2	470.766178	939.517802	-0.26389	-0.00012423	0.54698	0.0002575	0.28309	0.00013327	470.76623472242886	76.09	1.0425	75.817	75.462	76.505	-0.27266					60	25	4	0	0	0	0.12366	1	9022	9022		105.27	36.784	1	2238200			44688	18695	30908	30959	50116	50116					0.04562392622699463
LLWAGPVNA	9	Unmodified	_LLWAGPVNA_					0	0	0		nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8;nc|ENSG00000283063|P0DPF7|TRBV6-3;nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6;nc|ENSG00000211721|A0A0K0K1A5|TRBV6-5	nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8	nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.7658996582031	2	470.766178	939.517802	0.053991	2.5417E-05	0.18164	8.5508E-05	0.23563	0.00011093	470.76610121552443	76.039	1.1294	75.781	75.477	76.607	-0.25865					62	27	3	0	0	0	0.061957	2	9032	9032;9045		124.32	55.839	1	2263600			44689	18695	30908	30959	50117;50118	50117					0.04562392622699463
LLWAGPVNA	9	Unmodified	_LLWAGPVNA_					0	0	0		nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8;nc|ENSG00000283063|P0DPF7|TRBV6-3;nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6;nc|ENSG00000211721|A0A0K0K1A5|TRBV6-5	nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8	nc|ENSG00000253534|A0A0A6YYG3|TRBV6-8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.76580810546875	2	470.766178	939.517802	-0.18033	-8.4894E-05	0.4511	0.00021236	0.27077	0.00012747	470.76624182726596	75.92	1.046	75.744	75.429	76.475	-0.17548					59	25	4	0	0	0	0.039359	2	9004	8993;9004		134.12	54.18	1	2260600			44690	18695	30908	30959	50119;50120	50120					0.04562392622699463
LLWAPALSL	9	Unmodified	_LLWAPALSL_					0	0	0		ENSG00000148204|ENST00000373631|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2	ENSG00000148204|ENST00000373631|CRB2	ENSG00000148204|ENST00000373631|CRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2857360839844	2	492.299853	982.585153	1.0407	0.00051232	3.9362	0.0019378	4.9769	0.0024501	492.3007112441257	58.88	1.197	58.693	58.173	59.37	-0.18705					86	32	5	0	0	0	0.024517	1	6647	6647		35.201	13.241	1	2575100			44691	6008	30909	30960	50121	50121					0.09316422833660454
LLWAPEHG	8	Unmodified	_LLWAPEHG_					0	0	0		ENST00000464224.5_1_11:113185371-113185644:+|nuORF	ENST00000464224.5_1_11:113185371-113185644:+|nuORF	ENST00000464224.5_1_11:113185371-113185644:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.28741455078125	2	461.742702	921.470852	0.77123	0.00035611	0.99622	0.00046	1.7675	0.00081611	461.74298533819643	59.212	0.43839	59.297	59.063	59.501	0.085686					20	11	2	0	0	0	0.027866	1	6677	6677		57.453	18.431	1	106910			44692	14754	30910	30961	50122	50122					0.006975330715590644
LLWASPVNA	9	Unmodified	_LLWASPVNA_					0	0	0		nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.7716064453125	2	485.77146	969.528367	-0.21001	-0.00010201	0.75509	0.0003668	0.54508	0.00026478	485.77160308170573	76.326	0.77266	76.058	75.779	76.552	-0.26806					43	18	3	0	0	0	0.39228	1	9057	9057		66.429	27.623	1	917490			44693	18691	30911	30962	50123	50123					0.04238375277122941
LLWASPVNA	9	Unmodified	_LLWASPVNA_					0	0	0		nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.77130126953125	2	485.77146	969.528367	-0.0095197	-4.6244E-06	0.5747	0.00027917	0.56518	0.00027455	485.77152711597176	76.285	0.8221	76.034	75.792	76.614	-0.25162					47	19	3	0	0	0	0.50848	2	9056	9056;9069		58.782	12.83	1	1092900			44694	18691	30911	30962	50124;50125	50124					0.04238375277122941
LLWASPVNA	9	Unmodified	_LLWASPVNA_					0	0	0		nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7714538574219	2	485.77146	969.528367	0.25823	0.00012544	0.04402	2.1384E-05	0.30225	0.00014682	485.77126591461774	76.175	1.1149	76.006	75.703	76.818	-0.16853					55	26	3	0	0	0	0.18915	1	9027	9027		90.777	36	1	1076100			44695	18691	30911	30962	50126	50126					0.04238375277122941
LLWASPVNA	9	Unmodified	_LLWASPVNA_					0	0	0		nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.77146	969.528367	-0.57656	-0.00028008	1.8926	0.00091937	1.316	0.00063929	485.77173494785205	76.13	0.71237	76.13	75.844	76.556	0	0.073536	0.0013448	NaN	90.777	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218760			44696	18691	30911	30962							0.04238375277122941
LLWDYVYQL	9	Unmodified	_LLWDYVYQL_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.818359375	2	606.818607	1211.62266	-1.1773	-0.00071443	1.099	0.00066691	-0.078314	-4.7522E-05	606.8192519327488	101.58	1.3254	101.58	101.2	102.53	0					74	27	4	0	0	0	0.03849	5	13002	12994;13002;13014;13028;13041		134.81	65.183	1	3358600			44697	868;5296	30912	30963	50127;50128;50129;50130;50131	50128					0.02531469308587475
LLWDYVYQL	9	Unmodified	_LLWDYVYQL_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.8187255859375	2	606.818607	1211.62266	-0.42065	-0.00025526	0.46503	0.00028219	0.044379	2.693E-05	606.8188401901533	101.53	1.2955	101.54	101.25	102.55	0.0090332					79	29	4	0	0	0	0.013333	5	12966	12954;12966;12978;12992;13004		176.41	91.051	1	3240800			44698	868;5296	30912	30963	50132;50133;50134;50135;50136	50133					0.02531469308587475
LLWDYVYQL	9	Unmodified	_LLWDYVYQL_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	606.8184814453125	2	606.818607	1211.62266	-0.88451	-0.00053674	1.1152	0.00067675	0.23073	0.00014001	606.8192020659906	101.64	1.1439	101.64	101.27	102.41	-0.0054474					75	25	5	0	0	0	0.047345	5	12946	12922;12934;12946;12959;12972		129.68	49.228	1	2899900			44699	868;5296	30912	30963	50137;50138;50139;50140;50141	50139					0.02531469308587475
LLWDYVYQL	9	Unmodified	_LLWDYVYQL_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.8179321289062	2	606.818607	1211.62266	-0.32075	-0.00019464	0.16435	9.9732E-05	-0.1564	-9.4905E-05	606.8186527529061	101.51	1.0527	101.38	101.17	102.23	-0.13156					51	24	4	0	0	0	0.53979	1	12599	12599		56.721	10.264	1	568810			44700	868;5296	30912	30963	50142	50142					0.02531469308587475
LLWDYVYQL	9	Unmodified	_LLWDYVYQL_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	606.818359375	2	606.818607	1211.62266	-0.028384	-1.7224E-05	-0.24285	-0.00014737	-0.27123	-0.00016459	606.8184115545429	101.5	0.75701	101.38	101.07	101.83	-0.12576					46	17	4	0	0	0	0.34489	2	12605	12605;12616		69.628	14.123	1	613780			44701	868;5296	30912	30963	50143;50144	50143					0.02531469308587475
LLWDYVYQL	9	Unmodified	_LLWDYVYQL_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7;ENSG00000139083|ENST00000396373|ETV6	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.8182983398438	2	606.818607	1211.62266	-0.073262	-4.4457E-05	-0.18647	-0.00011315	-0.25973	-0.00015761	606.818304038377	101.57	0.8279	101.4	101.15	101.97	-0.17178					37	18	3	0	0	0	0.2508	2	12601	12590;12601		82.241	23.685	1	588660			44702	868;5296	30912	30963	50145;50146	50146					0.02531469308587475
LLWEIVSL	8	Unmodified	_LLWEIVSL_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK;ENSG00000066056|ENST00000372476|TIE1	nc|ENSG00000120156|Q02763-3|TEK;ENSG00000066056|ENST00000372476|TIE1	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.790283203125	2	486.791861	971.569169	-0.44132	-0.00021483	-4.0701	-0.0019813	-4.5115	-0.0021961	486.78974038536256	52.006	1.2191	51.859	51.228	52.447	-0.14735					78	33	4	0	0	0	0.65272	1	5530	5530		71.378	0.5617	1	3801500			44703	3794;1330	30913	30964	50147	50147					0.0822471659673738
LLWEIVTL	8	Unmodified	_LLWEIVTL_					0	0	0		nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET	nc|ENSG00000165731|P07949-2|RET	nc|ENSG00000165731|P07949-2|RET	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.77911376953125	2	493.799686	985.584819	0.11427	5.6427E-05	1.6542	0.00081683	1.7684	0.00087325	493.80112540517393	57.45	0.23	57.45	57.266	57.496	0					7	5	2	0	0	0	0.027866	1	6440	6440		35.201	0	1	101250			44704	7460	30914	30965	50148	50148					0.09145003113803796
LLWEPAGAWLA	11	Unmodified	_LLWEPAGAWLA_					0	0	0		FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant;nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	613.8320922851562	2	613.832049	1225.64954	-0.40645	-0.00024949	0.50061	0.00030729	0.094164	5.7801E-05	613.8323034815196	99.114	1.0987	99.114	98.647	99.746	0					87	24	4	0	0	0	0.28593	4	12650	12650;12674;12686;12700		90.37	19.554	1	1972500			44705	7096	30915	30966	50149;50150;50151;50152	50149					0.04574577919811418
LLWEPAGAWLA	11	Unmodified	_LLWEPAGAWLA_					0	0	0		FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant;nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	613.8322143554688	2	613.832049	1225.64954	0.095539	5.8645E-05	0.32313	0.00019834	0.41866	0.00025699	613.831944222022	99.059	1.2202	99.07	98.564	99.785	0.010239					89	27	4	0	0	0	0.53206	1	12629	12629		74.255	8.7897	1	1853400			44706	7096	30915	30966	50153	50153					0.04574577919811418
LLWEPAGAWLA	11	Unmodified	_LLWEPAGAWLA_					0	0	0		FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant;nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	613.832275390625	2	613.832049	1225.64954	-0.44099	-0.00027069	0.48526	0.00029787	0.044275	2.7177E-05	613.8322484578647	99.197	1.0092	99.193	98.767	99.777	-0.0038757					73	22	4	0	0	0	0.048406	1	12604	12604		122.18	34.48	1	1608300			44707	7096	30915	30966	50154	50154					0.04574577919811418
LLWEPAGAWLA	11	Unmodified	_LLWEPAGAWLA_					0	0	0		FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant;nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	613.832049	1225.64954	0.63206	0.00038798	-0.37715	-0.0002315	0.25491	0.00015647	613.8316547983827	98.973	1.262	98.848	98.417	99.679	-0.12458	-0.14341	-0.00093516	NaN	122.18	94	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922240			44708	7096	30915	30966							0.04574577919811418
LLWEPAGAWLA	11	Unmodified	_LLWEPAGAWLA_					0	0	0		FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant;nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	613.832049	1225.64954	-0.23461	-0.00014401	0.38347	0.00023539	0.14886	9.1373E-05	613.8320727076139	99.067	1.1122	98.899	98.461	99.573	-0.16863	-0.092767	-1.3815E-06	NaN	122.18	75	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	891100			44709	7096	30915	30966							0.04574577919811418
LLWFLLWF	8	Unmodified	_LLWFLLWF_					0	0	0			REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF	REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3112182617188	2	569.328414	1136.64227	-0.96846	-0.00055137	3.2516	0.0018512	2.2832	0.0012999	569.32971820687	52.45	0.22252	52.181	52.054	52.277	-0.26903					9	5	2	0	0	0	0.027866	1	5439	5439		16.705	0	1	111510	+		44710	34566	30916	30967	50155	50155					0.07941890110009808
LLWGLEGLPL	10	Unmodified	_LLWGLEGLPL_					0	0	0		nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	nc|ENSG00000165271|Q9H6R4-2|NOL6	nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7693481445312	2	555.831517	1109.64848	-0.64858	-0.0003605	1.5649	0.00086982	0.91631	0.00050932	555.833505612212	38.09	0.22537	37.911	37.809	38.035	-0.17929					8	6	2	0	0	0	0.03519	1	3100	3100		38.806	0	1	107500			44711	7388	30917	30968	50156	50156					0.09804363550892958
LLWGNLPEI	9	Unmodified	_LLWGNLPEI_					0	0	0		nc|ENSG00000196550|Q5TYM5-2|FAM72A;nc|ENSG00000188610|Q86X60-2|FAM72B;ENST00000471903.2_1:120837853-120854583:+|nuORF;ENSG00000196550|ENST00000367128|FAM72A;ENSG00000188610|ENST00000369390|FAM72B	nc|ENSG00000196550|Q5TYM5-2|FAM72A	nc|ENSG00000196550|Q5TYM5-2|FAM72A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2398681640625	2	527.800217	1053.58588	-0.19766	-0.00010433	0.2638	0.00013923	0.066138	3.4908E-05	527.7998932025507	63.734	0.35847	63.482	63.3	63.659	-0.25141					16	9	2	0	0	0	0.023817	1	7430	7430		60.972	25.771	1	61776			44712	9731	30918	30969	50157	50157					0.06123217482695509
LLWGNLPEI	9	Unmodified	_LLWGNLPEI_					0	0	0		nc|ENSG00000196550|Q5TYM5-2|FAM72A;nc|ENSG00000188610|Q86X60-2|FAM72B;ENST00000471903.2_1:120837853-120854583:+|nuORF;ENSG00000196550|ENST00000367128|FAM72A;ENSG00000188610|ENST00000369390|FAM72B	nc|ENSG00000196550|Q5TYM5-2|FAM72A	nc|ENSG00000196550|Q5TYM5-2|FAM72A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.800217	1053.58588	-0.27983	-0.00014769	-0.58719	-0.00030992	-0.86702	-0.00045761	527.8000377333285	63.715	0.57385	63.487	63.251	63.825	-0.22773	-0.0022608	7.3618E-05	NaN	51.335	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131490			44713	9731	30918	30969							0.06123217482695509
LLWGNLPEI	9	Unmodified	_LLWGNLPEI_					0	0	0		nc|ENSG00000196550|Q5TYM5-2|FAM72A;nc|ENSG00000188610|Q86X60-2|FAM72B;ENST00000471903.2_1:120837853-120854583:+|nuORF;ENSG00000196550|ENST00000367128|FAM72A;ENSG00000188610|ENST00000369390|FAM72B	nc|ENSG00000196550|Q5TYM5-2|FAM72A	nc|ENSG00000196550|Q5TYM5-2|FAM72A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.800217	1053.58588	0.31909	0.00016842	-0.86302	-0.0004555	-0.54393	-0.00028708	527.7997433793962	63.752	0.55161	63.494	63.201	63.752	-0.25824	0.0048979	-0.00021755	NaN	51.335	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151710			44714	9731	30918	30969							0.06123217482695509
LLWGVLAEV	9	Unmodified	_LLWGVLAEV_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3133544921875	2	500.29731	998.580068	-0.29503	-0.0001476	3.979	0.0019907	3.684	0.0018431	500.2996732418511	76.079	0.2847	75.911	75.853	76.138	-0.16854					11	6	2	0	0	0	0.023954	1	9044	9044		42.474	5.3154	1	167140	+		44715	23007	30919	30970	50158	50158					0.08072118971028885
LLWHASGG	8	Unmodified	_LLWHASGG_					0	0	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.7502746582031	2	420.72177	839.428987	0.1555	6.5423E-05	-0.079633	-3.3503E-05	0.07587	3.192E-05	420.7216632921003	41.792	0.50493	41.561	41.394	41.899	-0.23029					22	13	2	0	0	0	0.027866	1	3747	3747		28.254	23.573	1	324440	+		44716	35563	30920	30971	50159	50159					0.0028497738304622544
LLWIAQNVR	9	Unmodified	_LLWIAQNVR_					0	0	0			REV__ENSG00000083845|ENST00000196551|RPS5	REV__ENSG00000083845|ENST00000196551|RPS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2651977539062	2	556.832383	1111.65021	-0.29126	-0.00016219	1.5478	0.00086187	1.2566	0.00069969	556.8329084201613	52.535	0.48383	52.345	52.188	52.672	-0.18982					20	11	3	0	0	0	0.024541	1	5491	5491		16.473	0	1	119570	+		44717	20724	30921	30972	50160	50160					0.09885417359510029
LLWIWLVS	8	Unmodified	_LLWIWLVS_					0	0	0		ENST00000481996.1_1_6:74344990-74351530:-|nuORF;nc|ENSG00000119899|Q9NRA2-2|SLC17A5;ENSG00000119899|ENST00000355773|SLC17A5	ENST00000481996.1_1_6:74344990-74351530:-|nuORF	ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7875366210938	2	515.310221	1028.60589	0.55205	0.00028448	-1.1864	-0.00061135	-0.63432	-0.00032687	515.3094619110118	59.391	0.59964	59.209	58.911	59.511	-0.18133					37	14	3	0	0	0	0.027866	1	6584	6584		46.766	0	1	806720			44718	3771	30922	30973	50161	50161					0.0927301321332834
LLWKEKQA	8	Unmodified	_LLWKEKQA_					0	0	0			REV__nc|ENSG00000161533|Q15067|ACOX1	REV__nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7665100097656	2	508.300384	1014.58622	-0.14599	-7.4206E-05	0.43497	0.00022109	0.28898	0.00014689	508.3006471208829	65.814	0.53445	65.844	65.624	66.159	0.030106					41	13	4	0	0	0	0.027866	1	7700	7700		65.803	0	1	1196400	+		44719	36840	30923	30974	50162	50162					0.07950637202554844
LLWKKISYTN	10	Unmodified	_LLWKKISYTN_					0	0	0		ENSG00000154511|ENST00000370310|DIPK1A	ENSG00000154511|ENST00000370310|DIPK1A	ENSG00000154511|ENST00000370310|DIPK1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3684692382812	2	633.366256	1264.71796	0.30625	0.00019397	4.1235	0.0026117	4.4298	0.0028057	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	1.1266	1	11775	11775		29.17	2.4771	1	9528000			44720	6416	30924	30975	50163	50163					0.09618822499669477
LLWKNWRLKN	10	Unmodified	_LLWKNWRLKN_					0	0	0		ENST00000557933.5_1_19:11240172-11241989:+|nuORF;nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR	ENST00000557933.5_1_19:11240172-11241989:+|nuORF	ENST00000557933.5_1_19:11240172-11241989:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.6081237792969	3	457.606701	1369.79827	0.3464	0.00015852	2.511	0.001149	2.8574	0.0013076	457.60795031928546	98.588	2.0119	98.598	97.815	99.827	0.010231					130	46	3	0	0	0	1.1117	1	12571	12571		16.717	0.79673	1	424030			44721	4390	30925	30976	50164	50164					0.1281672861334755
LLWLGVFL	8	Unmodified	_LLWLGVFL_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21;ADAM21|p.C446Lfs*100|1|0.24|ENSG00000139985|chr14:70458836-70458836|G/-|frameshift_variant;ENST00000530196.1_1_14:70713981-70714470:-|nuORF	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.8017883300781	2	480.799489	959.584425	-0.63881	-0.00030714	3.0038	0.0014442	2.365	0.0011371	480.80082202255966	94.22	2.2256	94.226	93.689	95.914	0.0059814					161	52	5	0	0	0	1.0241	1	11990	11990		33.493	8.989	1	22094000			44722	5383	30926	30977	50165	50165					0.1030162818460667
LLWLINLA	8	Unmodified	_LLWLINLA_					0	0	0			REV__ENST00000473145.5_1_3:52448512-52448653:+|nuORF	REV__ENST00000473145.5_1_3:52448512-52448653:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.3240051269531	2	478.302396	954.590239	-0.19694	-9.4198E-05	-3.7926	-0.001814	-3.9896	-0.0019082	478.3003870320396	24.438	0.4194	24.263	24.048	24.468	-0.17484					16	9	2	0	0	0	0.027866	1	1086	1086		37.028	0	1	154530	+		44723	33226	30927	30978	50166	50166					0.11112726696273967
LLWLPGGI	8	Unmodified	_LLWLPGGI_					0	0	0		ENST00000487841.5_1_6:166738023-166743732:-|nuORF;ENSG00000198818|ENST00000361731|SFT2D1	ENST00000487841.5_1_6:166738023-166743732:-|nuORF	ENST00000487841.5_1_6:166738023-166743732:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7483215332031	2	434.768189	867.521825	-0.32884	-0.00014297	3.665	0.0015934	3.3362	0.0014505	434.77009261612125	65.25	0.30306	65.25	65.055	65.358	0					20	8	3	0	0	0	0.027866	1	7697	7697		33.493	8.0428	1	441500			44724	10211	30928	30979	50167	50167					0.08276482116434636
LLWMLLVE	8	Unmodified	_LLWMLLVE_					0	0	0			REV__ENSG00000172889|ENST00000308874|EGFL7	REV__ENSG00000172889|ENST00000308874|EGFL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.79339599609375	2	508.796089	1015.57763	0.1912	9.7284E-05	-3.1008	-0.0015777	-2.9096	-0.0014804	508.79437577539767	104.53	0.67113	104.4	104.14	104.81	-0.12561					38	17	3	0	0	0	0.96719	1	13021	13021		42.474	6.0277	1	161550	+		44725	26718	30929	30980	50168	50168					0.07045947241726935
LLWMLLVE	8	Unmodified	_LLWMLLVE_					0	0	0			REV__ENSG00000172889|ENST00000308874|EGFL7	REV__ENSG00000172889|ENST00000308874|EGFL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.7941589355469	2	508.796089	1015.57763	-0.69878	-0.00035553	-2.2339	-0.0011366	-2.9327	-0.0014921	508.79480674111306	104.53	0.69931	104.4	104.16	104.86	-0.12927					39	19	3	0	0	0	0.85409	2	13041	13029;13041		54.765	7.1073	1	238860	+		44726	26718	30929	30980	50169;50170	50170					0.07045947241726935
LLWMLLVE	8	Unmodified	_LLWMLLVE_					0	0	0			REV__ENSG00000172889|ENST00000308874|EGFL7	REV__ENSG00000172889|ENST00000308874|EGFL7	MSMS	OPSCC_40_ClassI_Rep-3	6	508.79449462890625	2	508.796089	1015.57763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.65	1	104.48	103.98	104.98	-0.16484								0	0	0	0.6544	1	13012	13012		44.531	5.5096	1		+		44727	26718	30929	30980	50171	50171					0.07045947241726935
LLWPICLVD	9	Unmodified	_LLWPICLVD_					0	0	0			REV__ENST00000553863.5_1_14:77771036-77772802:-|nuORF	REV__ENST00000553863.5_1_14:77771036-77772802:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3244018554688	2	536.298996	1070.58344	-0.71062	-0.0003811	-3.7169	-0.0019934	-4.4275	-0.0023745	536.2969558473745	57.055	0.61279	57.055	56.809	57.422	0					29	16	2	0	0	0	0.024357	1	6359	6359		44.531	7.372	1	1302600	+		44728	34975	30930	30981	50172	50172					0.050970457534049274
LLWPKRES	8	Unmodified	_LLWPKRES_					0	0	0		ENST00000524877.5_1_11:61729625-61731591:+|nuORF;ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-4|BEST1;ENSG00000167995|ENST00000378043|BEST1;nc|ENSG00000167995|O76090-3|BEST1	ENST00000524877.5_1_11:61729625-61731591:+|nuORF	ENST00000524877.5_1_11:61729625-61731591:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	514.8005981445312	2	514.798009	1027.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.494	1	66.494	65.994	66.994	0								0	0	0	1.2609	1	7913	7913		8.8223	0	1				44729	7766	30931	30982	50173	50173					0.06877753059779934
LLWQNKTI	8	Unmodified	_LLWQNKTI_					0	0	0			REV__ENSG00000165678|ENST00000372134|GHITM	REV__ENSG00000165678|ENST00000372134|GHITM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7672424316406	2	508.300384	1014.58622	-0.084761	-4.3084E-05	-0.02114	-1.0746E-05	-0.1059	-5.383E-05	508.2996613791024	61.389	0.28785	61.162	60.937	61.225	-0.22663					10	7	2	0	0	0	0.027866	1	7057	7057		50.025	5.9077	1	196310	+		44730	25916	30932	30983	50174	50174					0.07950637202554844
LLWQRHLYLQV	11	Unmodified	_LLWQRHLYLQV_					0	0	0			REV__nc|ENSG00000187048|Q02928-2|CYP4A11	REV__nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2711181640625	3	490.285628	1467.83505	0.03345	1.64E-05	3.3183	0.0016269	3.3518	0.0016433	490.28713690775095	41.406	0.70692	41.283	40.98	41.687	-0.12317					44	19	3	0	0	0	0.024748	1	3723	3723		30.569	22.162	1	332350	+		44731	27908	30933	30984	50175	50175					0.11984980439274295
LLWQRHLYLQV	11	Unmodified	_LLWQRHLYLQV_					0	0	0			REV__nc|ENSG00000187048|Q02928-2|CYP4A11	REV__nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.77362060546875	3	490.285628	1467.83505	-1.2487	-0.00061223	3.3461	0.0016406	2.0974	0.0010283	490.28782419677583	65.337	0.61694	65.135	64.899	65.516	-0.20254					24	14	3	0	0	0	0.024869	1	7512	7512		3.4087	0	1	111710	+		44732	27908	30933	30984	50176	50176					0.11984980439274295
LLWQSLIL	8	Unmodified	_LLWQSLIL_					0	0	0		nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3057861328125	2	493.307678	984.600803	-0.39114	-0.00019295	-4.2196	-0.0020816	-4.6108	-0.0022745	493.3056111688616	56.24	0.7262	56.084	55.742	56.468	-0.15601					63	19	5	0	0	0	0.2917	3	6249	6237;6249;6262		115.46	16.084	1	10712000			44733	18484	30934	30985	50177;50178;50179	50178					0.10788709350720183
LLWQSLIL	8	Unmodified	_LLWQSLIL_					0	0	0		nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3063049316406	2	493.307678	984.600803	-0.78707	-0.00038827	-3.7876	-0.0018685	-4.5747	-0.0022567	493.30582554426474	55.972	0.68941	56.07	55.707	56.397	0.097893					57	18	4	0	0	0	0.27193	4	6133	6122;6133;6144;6156		123.99	24.614	1	9734700			44734	18484	30934	30985	50180;50181;50182;50183	50181					0.10788709350720183
LLWRRWQKRR	10	Unmodified	_LLWRRWQKRR_					0	0	0		SPN|p.R280W|1|0.15|ENSG00000197471|chr16:29664566-29664566|C/T|missense_variant	SPN|p.R280W|1|0.15|ENSG00000197471|chr16:29664566-29664566|C/T|missense_variant	SPN|p.R280W|1|0.15|ENSG00000197471|chr16:29664566-29664566|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.97039794921875	3	499.972378	1496.8953	-0.23171	-0.00011585	-3.6374	-0.0018186	-3.8691	-0.0019344	499.9704651204952	17.246	0.30288	17.039	16.913	17.216	-0.20669					16	5	4	0	0	0	1.1228	1	155	155		22.58	3.317	1	121100			44735	37963	30935	30986	50184	50184					0.16673135612995793
LLWSPWSP	8	Unmodified	_LLWSPWSP_					0	0	0		nc|ENSG00000196388|Q0VD86-2|INCA1;ENSG00000196388|ENST00000695324|INCA1	nc|ENSG00000196388|Q0VD86-2|INCA1	nc|ENSG00000196388|Q0VD86-2|INCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2984313964844	2	493.260728	984.506903	-0.63768	-0.00031454	-3.5878	-0.0017697	-4.2255	-0.0020843	493.258350738894	60.897	0.30137	60.684	60.493	60.795	-0.2134					9	7	2	0	0	0	0.027866	1	6977	6977		44.531	0	1	45355			44736	9864	30936	30987	50185	50185					0.014029902484139711
LLWVKSIL	8	Unmodified	_LLWVKSIL_					0	0	0		ENST00000520364.1_1_6:109309715-109314184:-|nuORF	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.26348876953125	2	486.318046	970.621539	-0.45769	-0.00022258	-2.608	-0.0012683	-3.0657	-0.0014909	486.3167705535438	66.79	0.77068	66.509	66.384	67.154	-0.28149					33	21	2	0	0	0	0.027866	1	7939	7939		40.573	11.423	1	1111700			44737	15978	30937	30988	50186	50186					0.13505299730377374
LLWVLSLLV	9	Unmodified	_LLWVLSLLV_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7711181640625	2	528.346803	1054.67905	-0.77202	-0.00040789	-2.7637	-0.0014602	-3.5357	-0.0018681	528.3451676846792	47.61	0.61514	47.669	47.457	48.072	0.059097					37	18	3	0	0	0	0.024412	1	4776	4776		31.955	0	1	703840			44738	8323	30938	30989	50187	50187					0.15390141935927204
LLWVLSLLV	9	Unmodified	_LLWVLSLLV_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.346803	1054.67905	-0.68249	-0.00036059	-2.982	-0.0015755	-3.6645	-0.0019361	528.3451407042288	47.922	0.58504	47.646	47.305	47.89	-0.27598	-0.021634	-4.972E-05	NaN	31.955	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213740			44739	8323	30938	30989							0.15390141935927204
LLWVLSLLV	9	Unmodified	_LLWVLSLLV_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.346803	1054.67905	0.22118	0.00011686	-4.2925	-0.002268	-4.0714	-0.0021511	528.3443545549717	47.775	0.39807	47.588	47.389	47.787	-0.18684	-0.079769	-0.0014345	NaN	31.955	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180190			44740	8323	30938	30989							0.15390141935927204
LLWWTPLV	8	Unmodified	_LLWWTPLV_					0	0	0			REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3235473632812	2	514.302396	1026.59024	0.2953	0.00015188	-3.3504	-0.0017231	-3.0551	-0.0015712	514.300277683338	74.403	0.75822	74.145	73.944	74.702	-0.25887					32	17	3	0	0	0	0.027866	1	9052	9052		29.842	8.8946	1	384040	+		44741	34025	30939	30990	50188	50188					0.07800726696245874
LLYARIPGE	9	Unmodified	_LLYARIPGE_					0	0	0			REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7482299804688	2	516.297842	1030.58113	-0.15207	-7.8511E-05	0.3586	0.00018514	0.20653	0.00010663	516.297605883334	63.433	0.62403	63.205	62.851	63.475	-0.22773					19	15	2	0	0	0	0.024319	1	7203	7203		39.253	3.6345	1	361760	+		44742	20003	30940	30991	50189	50189					0.06706333339957382
LLYAVRLH	8	Unmodified	_LLYAVRLH_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7845458984375	2	492.803094	983.591636	0.084211	4.1499E-05	-0.42528	-0.00020958	-0.34107	-0.00016808	492.80252221569435	46.921	0.27711	46.652	46.452	46.73	-0.26939					17	7	3	0	0	0	0.027866	1	4515	4515		15.636	0	1	588330			44743	10277	30941	30992	50190	50190					0.09918360785036384
LLYCCALP	8	2 Carbamidomethyl (C)	_LLYC(Carbamidomethyl (C))C(Carbamidomethyl (C))ALP_	LLYC(1)C(1)ALP		LLYC(67)C(67)ALP		0	2	0			REV__nc|ENSG00000082512|O00463-2|TRAF5	REV__nc|ENSG00000082512|O00463-2|TRAF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.7651672363281	2	505.245906	1008.47726	-0.54489	-0.0002753	2.019	0.0010201	1.4741	0.00074481	505.2462942118742	80.075	0.54606	80.075	79.911	80.457	0					23	12	2	0	0	0	0.027866	1	9945	9945		67.327	24.931	1	157310	+		44744	36487	30942	30993	50191	50191	471;472				-0.026640330835903114
LLYCCALP	8	2 Carbamidomethyl (C)	_LLYC(Carbamidomethyl (C))C(Carbamidomethyl (C))ALP_	LLYC(1)C(1)ALP		LLYC(81)C(81)ALP		0	2	0			REV__nc|ENSG00000082512|O00463-2|TRAF5	REV__nc|ENSG00000082512|O00463-2|TRAF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3187255859375	2	505.245906	1008.47726	-0.54538	-0.00027555	1.9437	0.00098203	1.3983	0.00070648	505.24662865682336	80.117	0.50296	80.139	79.897	80.4	0.021446					21	11	2	0	0	0	0.027866	1	9840	9840		80.997	47.481	1	174420	+		44745	36487	30942	30993	50192	50192	471;472				-0.026640330835903114
LLYCEALNL	9	Unmodified	_LLYCEALNL_					0	0	0		ENSG00000162951|ENST00000295057|LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2833862304688	2	526.27826	1050.54197	-0.56391	-0.00029677	2.742	0.0014431	2.1781	0.0011463	526.2794897041156	91.087	1.1323	91.075	90.869	92.001	-0.012383					71	26	4	0	0	0	0.11848	1	11491	11491		106.42	7.0402	1	607110			44746	7018	30943	30994	50193	50193					0.018718649940410614
LLYDAEIHL	9	Unmodified	_LLYDAEIHL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.7957763671875	2	543.795132	1085.57571	-0.10679	-5.8071E-05	-0.14265	-7.7572E-05	-0.24944	-0.00013564	543.7949670948245	71.786	1.3131	71.786	71.301	72.614	0					112	33	5	0	0	0	0.016838	3	8703	8693;8703;8714		152.63	64.268	1	14874000			44747	7232	30944	30995	50194;50195;50196	50195					0.03634609757477847
LLYDAEIHL	9	Unmodified	_LLYDAEIHL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.7951049804688	2	543.795132	1085.57571	-0.091788	-4.9914E-05	-0.23831	-0.00012959	-0.3301	-0.00017951	543.7949250070777	72.146	1.0825	71.864	71.545	72.627	-0.28124					68	27	3	0	0	0	0.016838	3	8731	8710;8719;8731		152.63	58.627	1	16183000			44748	7232	30944	30995	50197;50198;50199	50199					0.03634609757477847
LLYDAEIHL	9	Unmodified	_LLYDAEIHL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.7957153320312	2	543.795132	1085.57571	-0.31989	-0.00017396	-0.038327	-2.0842E-05	-0.35822	-0.0001948	543.7949844839256	71.85	1.8942	71.86	71.508	73.402	0.0097733					110	48	5	0	0	0	0.016838	3	8648	8626;8637;8648		152.63	72.694	1	16730000			44749	7232	30944	30995	50200;50201;50202	50202					0.03634609757477847
LLYDAEIHL	9	Unmodified	_LLYDAEIHL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.7970581054688	2	543.795132	1085.57571	-0.19973	-0.00010861	-0.01686	-9.1684E-06	-0.21659	-0.00011778	543.7949676522435	72.096	0.99675	71.821	71.588	72.584	-0.27509					53	23	3	0	0	0	0.096521	4	8428	8428;8440;8453;8464		111.65	56.144	1	2466400			44750	7232	30944	30995	50203;50204;50205;50206	50203					0.03634609757477847
LLYDAEIHL	9	Unmodified	_LLYDAEIHL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.7958984375	2	543.795132	1085.57571	0.12692	6.9021E-05	-0.5434	-0.0002955	-0.41647	-0.00022648	543.7947945522822	72.101	1.1246	71.839	71.559	72.684	-0.26199					66	26	4	0	0	0	0.096521	3	8448	8437;8448;8461		111.65	38.566	1	3883800			44751	7232	30944	30995	50207;50208;50209	50208					0.03634609757477847
LLYDAEIHL	9	Unmodified	_LLYDAEIHL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.79541015625	2	543.795132	1085.57571	-0.6626	-0.00036032	0.39569	0.00021518	-0.26691	-0.00014514	543.7951881572016	71.927	1.0766	71.72	71.497	72.574	-0.20613					56	25	3	0	0	0	0.034181	4	8410	8399;8410;8423;8437		138.24	64.268	1	4329500			44752	7232	30944	30995	50210;50211;50212;50213	50211					0.03634609757477847
LLYDSRLLP	9	Unmodified	_LLYDSRLLP_					0	0	0			REV__ENST00000505065.1_1_5:130651746-130694915:+|nuORF	REV__ENST00000505065.1_1_5:130651746-130694915:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3163452148438	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.4752	1	10847	10847		60.972	4.2509	1	3529900	+		44753	33999	30945	30996	50214	50214					0.08222889028479585
LLYECSDNGR	10	Unmodified	_LLYECSDNGR_					0	0	0			REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2833862304688	2	585.266413	1168.51827	-0.41111	-0.00024061	-2.4421	-0.0014293	-2.8532	-0.0016699	585.2661237987874	51.089	0.15051	50.813	50.74	50.891	-0.27643					5	3	2	0	0	0	0.03519	1	5224	5224		52.937	1.6012	1	42174	+		44754	19248	30946	30997	50215	50215					-0.059246005104114374
LLYEINPVAQP	11	Unmodified	_LLYEINPVAQP_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	629.79638671875	2	628.847896	1255.68124	-0.67083	-0.00042185	1.1276	0.00070911	0.4568	0.00028726	628.8487053344649	57.864	0.26952	57.674	57.48	57.75	-0.19018					10	6	2	0	0	0	0.024749	1	6352	6352		19.104	0	1	110310	+		44755	29195	30947	30998	50216	50216					0.06362525883105263
LLYEIQVNL	9	Unmodified	_LLYEIQVNL_					0	0	0			REV__ENST00000406807.2_1_6:149812705-149813218:-|nuORF	REV__ENST00000406807.2_1_6:149812705-149813218:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8148193359375	2	552.818607	1103.62266	-0.11979	-6.6223E-05	0.13674	7.5591E-05	0.016946	9.368E-06	552.8186280280004	98.686	0.85805	98.697	98.232	99.09	0.010231					40	19	3	0	0	0	0.20967	1	12593	12593		87.754	5.5138	1	302190	+		44756	31928	30948	30999	50217	50217					0.07499469308618245
LLYERQRDA	9	Unmodified	_LLYERQRDA_					0	0	0			REV__ENSG00000143614|ENST00000368655|GATAD2B	REV__ENSG00000143614|ENST00000368655|GATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	583.28125	2	582.312012	1162.60947	-1.7099	-0.00099571	-4.0775	-0.0023744	-5.7874	-0.0033701	582.3094453487768	73.081	0.49525	73.081	72.867	73.362	0					20	12	2	0	0	0	0.024405	1	8903	8903		27.882	4.3595	1	216540	+		44757	24265	30949	31000	50218	50218					0.03467031249238062
LLYESPERY	9	Unmodified	_LLYESPERY_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2957763671875	2	585.295496	1168.57644	0.045071	2.638E-05	-0.72846	-0.00042636	-0.68339	-0.00039999	585.2949735533869	50.765	0.66766	50.653	50.267	50.934	-0.11163					52	17	4	0	0	0	0.016758	3	5161	5161;5172;5183		153.04	65.282	1	7361200			44758	7818	30950	31001	50219;50220;50221	50219					-0.001105955934690428
LLYESPERY	9	Unmodified	_LLYESPERY_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.29638671875	2	585.295496	1168.57644	-0.45885	-0.00026856	-0.38389	-0.00022469	-0.84274	-0.00049325	585.2950003728805	50.988	0.70894	50.711	50.407	51.116	-0.27643					64	18	5	0	0	0	0.014034	3	5200	5189;5200;5211		166.68	53.714	1	6718200			44759	7818	30950	31001	50222;50223;50224	50223					-0.001105955934690428
LLYESPERY	9	Unmodified	_LLYESPERY_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2965698242188	2	585.295496	1168.57644	-0.11742	-6.8727E-05	-0.95296	-0.00055777	-1.0704	-0.00062649	585.2947643082144	50.832	0.51744	50.651	50.353	50.87	-0.18071					48	13	5	0	0	0	0.016758	3	5171	5171;5182;5193		153.04	64.859	1	10119000			44760	7818	30950	31001	50225;50226;50227	50225					-0.001105955934690428
LLYFDIIY	8	Unmodified	_LLYFDIIY_					0	0	0			REV__ENST00000542747.5_1_6:149997313-149997388:-|nuORF	REV__ENST00000542747.5_1_6:149997313-149997388:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2769165039062	2	530.291694	1058.56883	-0.25847	-0.00013707	-1.1005	-0.00058359	-1.359	-0.00072065	530.2909190619633	58.726	0.20243	58.545	58.426	58.628	-0.18134					6	4	2	0	0	0	0.027866	1	6478	6478		81.716	10.338	1	105750	+		44761	34796	30951	31002	50228	50228					0.0418929687691616
LLYFGIAF	8	Unmodified	_LLYFGIAF_					0	0	0			REV__ENSG00000131482|ENST00000253801|G6PC1	REV__ENSG00000131482|ENST00000253801|G6PC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.810791015625	2	472.268022	942.521491	0.61542	0.00029064	3.8911	0.0018376	4.5065	0.0021283	472.2699791287793	21.825	0.38363	21.647	21.397	21.781	-0.17721					12	7	3	0	0	0	0.027866	1	698	698		10.185	0	1	25485	+		44762	23217	30952	31003	50229	50229					0.04793062396561254
LLYFKLGW	8	Unmodified	_LLYFKLGW_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2890625	2	520.302396	1038.59024	-1.2094	-0.00062924	-1.9304	-0.0010044	-3.1398	-0.0016337	520.3007868251082	62.846	0.43907	62.846	62.651	63.09	0					20	10	3	0	0	0	0.027866	1	7323	7323		49.211	0	1	218300			44763	10140	30953	31004	50230	50230					0.07248726696275298
LLYFSLFV	8	Unmodified	_LLYFSLFV_					0	0	0			REV__SIDT2|p.I303V|1|0.17|ENSG00000149577|chr11:117186168-117186168|A/G|missense_variant	REV__SIDT2|p.I303V|1|0.17|ENSG00000149577|chr11:117186168-117186168|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2902526855469	2	501.288954	1000.56336	1.1341	0.00056849	1.7906	0.00089763	2.9247	0.0014661	501.2895170379871	98.251	1.1783	98.127	97.812	98.99	-0.12413					77	28	4	0	0	0	0.94001	1	12192	12192		46.766	0	1	1580300	+		44764	37489	30954	31005	50231	50231					0.06309618085094826
LLYGDSVDSL	10	Unmodified	_LLYGDSVDSL_					0	0	0		ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8033447265625	2	541.274229	1080.53391	0.36517	0.00019766	-4.455	-0.0024114	-4.0898	-0.0022137	541.2712177865467	96.418	0.95032	96.42	96.154	97.105	0.0020752					34	21	2	0	0	0	0.03519	1	12205	12205		21.96	0	1	223710			44765	5735	30955	31006	50232	50232					-0.0031399072172462184
LLYGEAVVF	9	Unmodified	_LLYGEAVVF_					0	0	0			REV__OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	REV__OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8251037597656	2	505.781493	1009.54843	-0.37594	-0.00019014	3.5403	0.0017906	3.1644	0.0016005	505.7831026276825	79.826	0.79732	79.847	79.561	80.358	0.021439					51	18	3	0	0	0	0.023528	1	9846	9846		71.378	2.8932	1	1160100	+		44766	28167	30956	31007	50233	50233					0.044041262170935624
LLYGEAVVF	9	Unmodified	_LLYGEAVVF_					0	0	0			REV__OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	REV__OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.781493	1009.54843	0.50394	0.00025488	2.5953	0.0013126	3.0992	0.0015675	505.78255408182036	79.927	0.50284	79.681	79.447	79.949	-0.2465	-0.065637	-0.0011323	NaN	71.378	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114850	+		44767	28167	30956	31007							0.044041262170935624
LLYGFLIKANN	11	Unmodified	_LLYGFLIKANN_					0	0	0		ENST00000491390.1_1_1:160325502-160326610:+|nuORF;nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	ENST00000491390.1_1_1:160325502-160326610:+|nuORF	ENST00000491390.1_1_1:160325502-160326610:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3695068359375	2	633.366256	1264.71796	0.31837	0.00020164	4.1352	0.0026191	4.4535	0.0028207	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	1.018	1	11999	11999		32.812	3.6424	1	3419700			44768	6983	30957	31008	50234	50234					0.09618822499669477
LLYGKRDF	8	Unmodified	_LLYGKRDF_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3233947753906	2	506.284734	1010.55492	-0.75422	-0.00038185	-4.4051	-0.0022302	-5.1593	-0.0026121	506.28228329897047	39.077	0.49679	38.978	38.772	39.269	-0.098751					22	13	2	0	0	0	0.027866	1	3286	3286		26.796	0	1	351120			44769	10420	30958	31009	50235	50235					0.05006064168469493
LLYGLPFAA	9	Unmodified	_LLYGLPFAA_					0	0	0			REV__ENST00000260403.6_1_15:43473393-43473471:+|nuORF	REV__ENST00000260403.6_1_15:43473393-43473471:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7764892578125	2	482.778754	963.542954	-0.0019381	-9.3566E-07	-3.7537	-0.0018122	-3.7556	-0.0018131	482.7765879924584	97.265	1.4826	97.265	96.792	98.275	0					67	33	4	0	0	0	0.93795	1	12437	12437		29.842	3.0454	1	992680	+		44770	29599	30959	31010	50236	50236					0.05972447425278915
LLYGVSSL	8	Unmodified	_LLYGVSSL_					0	0	0		ENST00000355803.8_1_16:1359045-1359090:+|nuORF	ENST00000355803.8_1_16:1359045-1359090:+|nuORF	ENST00000355803.8_1_16:1359045-1359090:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.24609375	2	426.247286	850.48002	-0.42493	-0.00018113	-2.4071	-0.001026	-2.832	-0.0012071	426.2461978843956	89.569	1.9508	89.407	88.263	90.214	-0.1626					72	46	2	0	0	0	1.0574	1	10935	10935		21.702	1.2205	1	716840			44771	12656	30960	31011	50237	50237					0.04879881637236849
LLYHPSRN	8	Unmodified	_LLYHPSRN_					0	0	0			REV__GALNT13|p.T244Ifs*10|1|0.2|ENSG00000144278|chr2:154245856-154245856|C/-|frameshift_variant	REV__GALNT13|p.T244Ifs*10|1|0.2|ENSG00000144278|chr2:154245856-154245856|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.27117919921875	2	500.272158	998.529764	-0.41173	-0.00020598	-0.45438	-0.00022731	-0.86611	-0.00043329	500.2721469767982	22.041	1.1792	21.965	21.56	22.739	-0.075296					84	24	6	0	0	0	0.94517	1	749	749		45.952	2.3259	1	381020	+		44772	24320	30961	31012	50238	50238					0.030440093659080958
LLYIATLTIL	10	Unmodified	_LLYIATLTIL_					0	0	0		ENST00000468349.1_1_21:34962215-34963578:-|nuORF	ENST00000468349.1_1_21:34962215-34963578:-|nuORF	ENST00000468349.1_1_21:34962215-34963578:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3297119140625	2	567.36265	1132.71075	-1.4463	-0.0008206	1.939	0.0011001	0.49261	0.00027949	567.3641893257895	91.836	0.13032	91.688	91.612	91.742	-0.1487					6	2	3	0	0	0	0.03519	1	11257	11257		20.947	0	1	23457			44773	14866	30962	31013	50239	50239					0.1497008989922506
LLYIATLTIL	10	Unmodified	_LLYIATLTIL_					0	0	0		ENST00000468349.1_1_21:34962215-34963578:-|nuORF	ENST00000468349.1_1_21:34962215-34963578:-|nuORF	ENST00000468349.1_1_21:34962215-34963578:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.36265	1132.71075	-0.28806	-0.00016344	0.80898	0.00045899	0.52092	0.00029555	567.362262112291	91.775	0.51604	91.652	91.243	91.759	-0.12341					17	11	2	0	0	0	0.03519	1	11223	11223		27.882	13.745	1	82969			44774	14866	30962	31013	50240	50240					0.1497008989922506
LLYIGVKII	9	Unmodified	_LLYIGVKII_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3138427734375	2	516.346803	1030.67905	-0.26798	-0.00013837	1.8089	0.00093401	1.5409	0.00079564	516.3476000514171	97.921	0.55137	97.921	97.639	98.19	0					21	12	3	0	0	0	0.024541	1	12506	12506		24.203	0	1	192890	+		44775	24490	30963	31014	50241	50241					0.16494141935959306
LLYINPEA	8	Unmodified	_LLYINPEA_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.7776184082031	2	466.758018	931.501483	0.28774	0.0001343	-1.0938	-0.00051052	-0.80602	-0.00037622	466.75748130804726	81.146	0.57526	80.908	80.686	81.262	-0.23784					22	13	2	0	0	0	0.027866	1	9777	9777		25.45	2.4077	1	121970			44776	8081	30964	31015	50242	50242					0.032992666659424685
LLYISVMHD	9	Unmodified	_LLYISVMHD_					0	0	0			REV__nc|ENSG00000164197|Q86T96-2|RNF180	REV__nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.78371	1089.55287	-0.69568	-0.00037969	-1.6349	-0.00089229	-2.3306	-0.001272	545.7824439789165	91.064	0.36487	90.941	90.794	91.159	-0.12341					12	8	2	0	0	0	0.024412	1	11190	11190		31.955	0	1	213410	+		44777	36862	30965	31016	50243	50243					0.011672673683733592
LLYKAIDAY	9	Unmodified	_LLYKAIDAY_					0	0	0		nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2344360351562	2	535.30005	1068.58555	0.39024	0.0002089	-0.48924	-0.00026189	-0.098992	-5.299E-05	535.2999159210219	67.556	0.38494	67.301	67.153	67.538	-0.25516					14	8	2	0	0	0	0.024381	1	7792	7792		45.952	7.1458	1	152520			44778	18133	30966	31017	50244	50244					0.05399797762834169
LLYKYKQKPK	10	Unmodified	_LLYKYKQKPK_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.5229187011719	3	436.939458	1307.79654	-0.094142	-4.1135E-05	1.018	0.00044479	0.92383	0.00040366	436.9398063433373	46.718	1.5993	46.622	46.368	47.967	-0.096653					108	43	4	0	0	0	0.03519	1	4715	4715		20.837	0	1	863020			44779	9145	30967	31018	50245	50245					0.15495674804719783
LLYLDRSF	8	Unmodified	_LLYLDRSF_					0	0	0			REV__ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	REV__ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3235473632812	2	513.784567	1025.55458	1.1289	0.00058003	0.61247	0.00031468	1.7414	0.0008947	513.7845831468043	74.021	1.2138	74.021	73.741	74.955	0					39	28	2	0	0	0	0.027866	1	9061	9061		20.482	0	1	166070	+		44780	19067	30968	31019	50246	50246					0.04282644448608153
LLYLIKTLI	9	Unmodified	_LLYLIKTLI_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3163452148438	2	545.367736	1088.72092	0.042981	2.344E-05	-0.42736	-0.00023307	-0.38438	-0.00020963	545.367379733606	86.149	1.0671	86.149	85.708	86.775	0					45	24	2	0	0	0	0.024374	1	10847	10847		40.778	0	1	130310	+		44781	25208	30969	31020	50247	50247					0.1801069762448151
LLYLIKTLI	9	Unmodified	_LLYLIKTLI_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.316650390625	2	545.367736	1088.72092	-1.4634	-0.00079808	0.81839	0.00044632	-0.64498	-0.00035175	545.3680544156142	86.105	1.3543	86.128	85.534	86.888	0.023674					58	31	3	0	0	0	0.024427	1	10760	10760		42.396	0	1	111460	+		44782	25208	30969	31020	50248	50248					0.1801069762448151
LLYLKHKVK	9	Unmodified	_LLYLKHKVK_					0	0	0		ENSG00000187950|ENST00000537054|OVCH1;nc|ENSG00000187950|Q7RTY7|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	ENSG00000187950|ENST00000537054|OVCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.310302734375	2	571.376426	1140.7383	0.53287	0.00030447	-2.4549	-0.0014027	-1.922	-0.0010982	571.8751829999106	74.671	0.2455	74.488	74.309	74.555	-0.18279					8	5	2	0	0	0	0.024541	1	8810	8810		12.207	5.4713	1	37462			44783	9675	30970	31021	50249	50249					0.17356037950116843
LLYLKKRR	8	Unmodified	_LLYLKKRR_					0	0	0			REV__POPDC3|p.S211T|1|0.26|ENSG00000132429|chr6:105158715-105158715|A/T|missense_variant	REV__POPDC3|p.S211T|1|0.26|ENSG00000132429|chr6:105158715-105158715|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.285888671875	2	545.366393	1088.71823	0.2627	0.00014327	1.9627	0.0010704	2.2253	0.0012136	545.3673766472019	84.462	0.4216	84.258	84.038	84.459	-0.20329					12	9	2	0	0	0	0.027866	1	10204	10204		26.796	0	1	65430	+		44784	23277	30971	31022	50250	50250					0.1774228701017364
LLYLLVPAL	9	Unmodified	_LLYLLVPAL_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R;ENST00000536092.1_12:7243942-7244984:-|nuORF;ENST00000545466.1_12:7242646-7244984:-|nuORF	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8333740234375	2	507.833529	1013.6525	0.15322	7.7812E-05	-0.31624	-0.0001606	-0.16301	-8.2784E-05	507.8332675843573	105.03	0.43443	104.9	104.68	105.12	-0.12444					35	13	3	0	0	0	0.80342	1	13064	13064		39.021	0	1	258220			44785	6745	30972	31023	50251	50251					0.1462245304460339
LLYLLVPAL	9	Unmodified	_LLYLLVPAL_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R;ENST00000536092.1_12:7243942-7244984:-|nuORF;ENST00000545466.1_12:7242646-7244984:-|nuORF	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8334045410156	2	507.833529	1013.6525	0.29283	0.00014871	-0.2568	-0.00013041	0.036021	1.8293E-05	507.8332285414215	105.13	0.47266	104.97	104.75	105.22	-0.16484					46	18	3	0	0	0	0.65391	2	13071	13065;13071		49.211	19.369	1	257580			44786	6745	30972	31023	50252;50253	50253					0.1462245304460339
LLYLPVIL	8	Unmodified	_LLYLPVIL_					0	0	0			REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.287841796875	2	472.314972	942.615391	-0.32753	-0.0001547	2.469	0.0011662	2.1415	0.0010115	472.3164526778493	94.364	0.37192	94.216	93.956	94.328	-0.14771					14	8	2	0	0	0	0.027866	1	11587	11587		24.504	0	1	145950	+		44787	29562	30973	31024	50254	50254					0.14178781498856097
LLYLRASE	8	Unmodified	_LLYLRASE_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7767639160156	2	482.776742	963.538931	0.6934	0.00033476	-0.18076	-8.7268E-05	0.51264	0.00024749	482.77627247229407	97.308	1.5198	97.308	96.749	98.269	-3.8147E-05					71	34	4	0	0	0	0.95417	1	12349	12349		44.531	3.9584	1	1009800			44788	1585	30974	31025	50255	50255					0.05570357931560466
LLYLSLPRI	9	Unmodified	_LLYLSLPRI_					0	0	0			REV__ENST00000515415.5_1_5:57755119-57755311:-|nuORF	REV__ENST00000515415.5_1_5:57755119-57755311:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3466186523438	2	544.347335	1086.68012	-0.50632	-0.00027562	0.23061	0.00012553	-0.27571	-0.00015008	544.3473901389589	78.575	1.272	78.419	78.043	79.315	-0.15591					69	29	4	0	0	0	0.75397	1	9355	9355		42.396	0	1	2709600	+		44789	34198	30975	31026	50256	50256					0.14024356304844332
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2462463378906	2	426.247286	850.48002	0.074352	3.1692E-05	-2.919	-0.0012442	-2.8446	-0.0012125	426.24594874726847	86.792	1.9596	86.792	86.085	88.044	0					116	46	5	0	0	0	1.0017	3	10936	10886;10898;10936		37.028	0	1	11239000	+		44790	28088	30976	31027	50257;50258;50259	50259					0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2468566894531	2	426.247286	850.48002	0.84051	0.00035826	-3.227	-0.0013755	-2.3865	-0.0010172	426.2457364112024	84.25	1.1492	84.047	83.567	84.716	-0.20329					69	26	5	0	0	0	0.95417	1	10156	10156		44.531	0	1	832130	+		44791	28088	30976	31027	50260	50260					0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2461242675781	2	426.247286	850.48002	0.26941	0.00011483	-3.1272	-0.001333	-2.8578	-0.0012181	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	1.0574	2	10573	10573;10585		26.796	0	1	14269000	+		44792	28088	30976	31027	50261;50262	50261					0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2464904785156	2	426.247286	850.48002	0.74858	0.00031908	-3.6265	-0.0015458	-2.8779	-0.0012267	426.24564567303247	84.196	1.2817	84.058	83.506	84.788	-0.13789					59	29	3	0	0	0	1.0239	1	10156	10156		33.516	1.5607	1	709750	+		44793	28088	30976	31027	50263	50263					0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.24609375	2	426.247286	850.48002	0.40347	0.00017198	-3.3338	-0.001421	-2.9303	-0.001249	426.24579574865595	86.946	2.1354	86.809	86.18	88.315	-0.13734					133	50	5	0	0	0	0.88442	3	10578	10530;10566;10578		52.299	2.2746	1	11262000	+		44794	28088	30976	31027	50264;50265;50266	50266					0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	426.247286	850.48002	-0.78622	-0.00033512	-2.1238	-0.00090525	-2.91	-0.0012404	426.24624737716465	84.001	1.0607	84.001	83.649	84.709	0	-0.046295	0.0007499	NaN	44.531	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	648070	+		44795	28088	30976	31027							0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.247286	850.48002	-0.91331	-0.00038929	-1.8036	-0.0007688	-2.717	-0.0011581	426.24635847753575	84.115	1.183	84.042	83.7	84.883	-0.072769	-0.0049367	0.0010228	NaN	44.531	81	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	727580	+		44796	28088	30976	31027							0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.247286	850.48002	-0.29354	-0.00012512	-2.5992	-0.0011079	-2.8928	-0.001233	426.2460501543944	84.024	1.1048	84.051	83.684	84.789	0.02655	0.0037458	0.00034458	NaN	44.531	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626570	+		44797	28088	30976	31027							0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	426.247286	850.48002	0.40347	0.00017198	-3.3338	-0.001421	-2.9303	-0.001249	426.24579574865595	86.946	2.1354	86.809	86.18	88.315	-0.13734	-0.00083911	-9.2269E-05	NaN	52.299	133	50	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11262000	+		44798	28088	30976	31027							0.04879881637236849
LLYLTNNLL	9	Unmodified	_LLYLTNNLL_					0	0	0		ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2960815429688	2	538.82115	1075.62775	0.23484	0.00012654	-3.3203	-0.001789	-3.0854	-0.0016625	539.3202708006698	87.39	0.42137	87.412	87.22	87.641	0.021255					16	9	2	0	0	0	0.022083	1	10940	10940		99.375	0	1	50844			44799	1065	30977	31028	50267	50267					0.09295773171243127
LLYMVLPP	8	Unmodified	_LLYMVLPP_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.27886962890625	2	473.277532	944.540511	-0.035156	-1.6639E-05	4.0296	0.0019071	3.9944	0.0018905	473.27927515504336	55.107	0.90251	54.876	54.53	55.432	-0.23087					60	25	3	0	0	0	0.9599	1	5893	5893		43.626	0	1	3141500			44800	9960	30978	31029	50268	50268					0.06602275695956905
LLYPGSTT	8	Unmodified	_LLYPGSTT_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.24609375	2	426.229094	850.443634	0.39579	0.0001687	4.2503	0.0018116	4.6461	0.0019803	426.2313505544462	87.001	0.63294	86.864	86.53	87.163	-0.13734					18	14	2	0	0	0	0.027866	1	10578	10578		44.531	16.277	1	49460	+		44801	28831	30979	31030	50269	50269					0.012430047405132427
LLYPPSNCI	9	Unmodified	_LLYPPSNCI_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.3098449707031	2	510.265153	1018.51575	-0.16352	-8.344E-05	-1.1424	-0.00058293	-1.3059	-0.00066637	510.2647703882014	77.174	0.25508	77.187	77.062	77.317	0.013496					7	5	2	0	0	0	0.024405	1	9436	9436		35.618	0	1	130040	+		44802	36535	30980	31031	50270	50270					0.007235958225919603
LLYPTEITV	9	Unmodified	_LLYPTEITV_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.79541015625	2	524.799883	1047.58521	0.21484	0.00011275	0.13216	6.9356E-05	0.347	0.0001821	524.7996028729073	81.385	0.83595	81.191	80.882	81.718	-0.19334					46	19	3	0	0	0	0.17455	1	9787	9787		94.006	30.7	1	576490			44803	777	30981	31032	50271	50271					0.06332378042975506
LLYQLPNN	8	Unmodified	_LLYQLPNN_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.76409912109375	2	487.768917	973.523281	-0.40381	-0.00019696	1.9278	0.00094032	1.524	0.00074335	487.7696331098916	43.434	0.93355	43.197	42.452	43.385	-0.23736					35	24	2	0	0	0	0.027866	1	3942	3942		19.36	5.5846	1	220820			44804	6953	30982	31033	50272	50272					0.035460714145074235
LLYQSELN	8	Unmodified	_LLYQSELN_					0	0	0			REV__ENSG00000127993|ENST00000265732|RBM48	REV__ENSG00000127993|ENST00000265732|RBM48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2928161621094	2	490.258382	978.502212	-0.29545	-0.00014485	-0.42071	-0.00020626	-0.71616	-0.00035111	490.25790662043204	67.273	0.47481	66.985	66.872	67.347	-0.28834					14	11	2	0	0	0	0.027866	1	7980	7980		31.955	5.2619	1	275860	+		44805	22959	30983	31034	50273	50273					0.012100613149982564
LLYRLSRSR	9	Unmodified	_LLYRLSRSR_					0	0	0		ENST00000534991.3_1_21:33765503-33765725:+|nuORF	ENST00000534991.3_1_21:33765503-33765725:+|nuORF	ENST00000534991.3_1_21:33765503-33765725:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3531494140625	2	582.354014	1162.69348	0.23222	0.00013523	-1.1864	-0.0006909	-0.95417	-0.00055567	582.3532009393155	102.38	1.4655	102.25	101.9	103.36	-0.12931					112	34	7	0	0	0	0.92825	1	12735	12735		30.504	3.8107	1	8525700			44806	16341	30984	31035	50274	50274					0.11863607136797327
LLYRRSRSL	9	Unmodified	_LLYRRSRSL_					0	0	0		nc|ENSG00000129515|Q9UNH7-2|SNX6;ENST00000556162.5_1_14:35032330-35073396:-|nuORF;ENSG00000129515|ENST00000362031|SNX6	nc|ENSG00000129515|Q9UNH7-2|SNX6	nc|ENSG00000129515|Q9UNH7-2|SNX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.3535766601562	2	582.354014	1162.69348	-1.4953	-0.00087077	0.5142	0.00029945	-0.98105	-0.00057132	582.3541963101079	102.27	0.85596	102.27	101.95	102.81	0					90	19	7	0	0	0	0.89441	1	13149	13149		32.812	1.2826	1	8600900			44807	4353	30985	31036	50275	50275					0.11863607136797327
LLYSEMDKL	9	Unmodified	_LLYSEMDKL_					0	0	0			REV__nc|ENSG00000154898|Q8IYA2|CCDC144CP;REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2888793945312	2	556.288825	1110.5631	0.28298	0.00015742	1.7321	0.00096356	2.0151	0.001121	556.2885791820868	67.439	3.4468	67.462	66.517	69.963	0.023903					212	87	5	0	0	0	0.27161	1	7993	7993		79.451	5.196	1	2760900	+		44808	26438;36802	30986	31037	50276	50276					0.01223830302933493
LLYSYVSDI	9	Unmodified	_LLYSYVSDI_					0	0	0		ENST00000307116.6_1_10:74767915-74768032:-|nuORF	ENST00000307116.6_1_10:74767915-74768032:-|nuORF	ENST00000307116.6_1_10:74767915-74768032:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.78173828125	2	536.78169	1071.54883	-0.37233	-0.00019986	0.35018	0.00018797	-0.022149	-1.1889E-05	536.7817590232619	94.976	1.0778	94.979	94.695	95.772	0.0033798					48	24	3	0	0	0	0.55828	1	12042	12042		55.504	5.4797	1	1296700			44809	12006	30987	31038	50277	50277					0.015915011462766415
LLYVLLGV	8	Unmodified	_LLYVLLGV_					0	0	0			REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.22821044921875	2	445.291497	888.568441	-0.75506	-0.00033622	-3.8689	-0.0017228	-4.624	-0.002059	445.2896352541639	26.683	0.48231	26.446	26.268	26.75	-0.23603					19	11	3	0	0	0	0.027866	1	1392	1392		43.626	10.133	1	237680	+		44810	24821	30988	31039	50278	50278					0.11969921947718376
LLYYMPSH	8	Unmodified	_LLYYMPSH_					0	0	0			REV__ENSG00000280094|ENST00000623530|OR1B1	REV__ENSG00000280094|ENST00000623530|OR1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2529907226562	2	512.252046	1022.48954	0.46489	0.00023814	1.7406	0.00089163	2.2055	0.0011298	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.98906	1	5831	5831		39.021	2.5747	1	42815000	+		44811	29233	30989	31040	50279	50279					-0.020806733488825557
LMACASIWL	9	Carbamidomethyl (C),Oxidation (M)	_LM(Oxidation (M))AC(Carbamidomethyl (C))ASIWL_	LMAC(1)ASIWL	LM(1)ACASIWL	LMAC(50)ASIWL	LM(50)ACASIWL	0	1	1			REV__ENSG00000183662|ENST00000478136|TAFA1	REV__ENSG00000183662|ENST00000478136|TAFA1	MSMS	OPSCC_39_ClassI_Rep-2	2	540.7640991210938	2	540.764463	1079.51437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.219	1	77.008	76.508	77.508	-0.21087								0	0	0	0.52164	1	9499	9499		50.025	9.2464	1		+		44812	27595	30990	31041	50280	50280	363	818			-0.022203615378202812
LMADILSRA	9	Unmodified	_LMADILSRA_					0	0	0		ENST00000578272.1_1_18:51686149-51714116:-|nuORF;ENSG00000134046|ENST00000256429|MBD2	ENST00000578272.1_1_18:51686149-51714116:-|nuORF	ENST00000578272.1_1_18:51686149-51714116:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2774963378906	2	495.276052	988.537551	-0.76342	-0.0003781	4.0627	0.0020121	3.2993	0.001634	495.277975893096	20.459	0.57648	20.459	20.176	20.753	0					32	11	4	0	0	0	0.42604	1	543	543		64.207	9.431	1	373390			44813	4746	30991	31042	50281	50281					0.042824005711622704
LMAEKIRP	8	Unmodified	_LMAEKIRP_					0	0	0		ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7354736328125	2	479.281137	956.547722	1.2416	0.00059509	-4.286	-0.0020542	-3.0443	-0.0014591	479.2789221522539	58.951	1.1419	58.951	58.495	59.637	0					85	30	4	0	0	0	0.027866	1	6807	6807		53.351	10.955	1	6852400			44814	6780	30992	31043	50282	50282					0.06771008296391301
LMAFSPSLQL	10	Oxidation (M)	_LM(Oxidation (M))AFSPSLQL_		LM(1)AFSPSLQL		LM(74)AFSPSLQL	0	0	1		nc|ENSG00000251664|Q9UN75-2|PCDHA12;ENSG00000251664|ENST00000398631|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.7952270507812	2	561.796817	1121.57908	0.37351	0.00020984	-3.6054	-0.0020255	-3.2319	-0.0018156	561.7946274883778	71.201	1.8764	71.201	70.656	72.533	0					120	47	4	0	0	0	0.62431	1	8639	8639		74.255	10.949	1	4721100			44815	10855	30993	31044	50283	50283		456			0.023155365398451977
LMAKREKL	8	Oxidation (M)	_LM(Oxidation (M))AKREKL_		LM(1)AKREKL		LM(59)AKREKL	0	0	1		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.79718017578125	2	502.799694	1003.58484	0.76384	0.00038406	-3.9299	-0.001976	-3.1661	-0.0015919	502.79762482275544	19.6	0.64475	19.4	19.156	19.801	-0.2001					26	12	3	0	0	0	0.80469	1	436	436		58.782	8.7574	1	308050			44816	8503	30994	31045	50284	50284		354			0.08318679842159327
LMALCRNEL	9	Unmodified	_LMALCRNEL_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7761840820312	2	531.775362	1061.53617	-0.78411	-0.00041697	3.1052	0.0016512	2.3211	0.0012343	531.777215766453	82.788	1.237	82.814	82.19	83.427	0.02655					80	28	5	0	0	0	0.11092	1	10289	10289		108.09	8.7125	1	3936900	+		44817	23052	30995	31046	50285	50285					0.007864432107453467
LMARWPTF	8	Unmodified	_LMARWPTF_					0	0	0		ENST00000447637.1_1_3:185146313-185146391:+|nuORF	ENST00000447637.1_1_3:185146313-185146391:+|nuORF	ENST00000447637.1_1_3:185146313-185146391:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2811279296875	2	511.26803	1020.52151	-0.30104	-0.00015391	1.7043	0.00087135	1.4033	0.00071744	511.2686840593205	61.051	0.64442	61.051	60.73	61.374	0					32	16	3	0	0	0	0.027866	1	7095	7095		40.573	6.651	1	750030			44818	14470	30996	31047	50286	50286					0.012067391249161119
LMARWPTF	8	Unmodified	_LMARWPTF_					0	0	0		ENST00000447637.1_1_3:185146313-185146391:+|nuORF	ENST00000447637.1_1_3:185146313-185146391:+|nuORF	ENST00000447637.1_1_3:185146313-185146391:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2810974121094	2	511.26803	1020.52151	-0.18022	-9.2143E-05	1.0915	0.00055802	0.91123	0.00046588	511.2684265935892	61.269	0.66922	61.051	60.715	61.384	-0.21819					31	17	2	0	0	0	0.027866	1	7099	7099		47.916	18.074	1	876840			44819	14470	30996	31047	50287	50287					0.012067391249161119
LMARWPTF	8	Unmodified	_LMARWPTF_					0	0	0		ENST00000447637.1_1_3:185146313-185146391:+|nuORF	ENST00000447637.1_1_3:185146313-185146391:+|nuORF	ENST00000447637.1_1_3:185146313-185146391:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.28106689453125	2	511.26803	1020.52151	-0.56217	-0.00028742	1.9611	0.0010027	1.399	0.00071524	511.2687872404046	61.007	0.67826	61.078	60.677	61.355	0.071125					32	17	3	0	0	0	0.027866	1	7001	7001		52.299	13.046	1	752410			44820	14470	30996	31047	50288	50288					0.012067391249161119
LMASTQPSH	9	Unmodified	_LMASTQPSH_					0	0	0			REV__nc|ENSG00000090861|P49588-2|AARS1	REV__nc|ENSG00000090861|P49588-2|AARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.26165771484375	2	486.234384	970.454216	-1.1972	-0.00058212	-3.9843	-0.0019373	-5.1815	-0.0025194	486.2330456706049	46.344	0.31226	46.192	46.099	46.411	-0.15156					12	8	2	0	0	0	0.023817	1	4573	4573		60.972	9.6365	1	133140	+		44821	20886	30997	31048	50289	50289					-0.03219335876678997
LMATMFQNL	9	2 Oxidation (M)	_LM(Oxidation (M))ATM(Oxidation (M))FQNL_		LM(1)ATM(1)FQNL		LM(74)ATM(74)FQNL	0	0	2		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.7620849609375	2	550.759378	1099.5042	0.20376	0.00011222	2.7607	0.0015205	2.9645	0.0016327	550.760776357194	74.317	0.67145	74.054	73.859	74.531	-0.26326					32	15	3	0	0	0	0.31037	1	8757	8757		74.255	15.473	1	796810			44822	4462	30998	31049	50290	50290		176;177			-0.0415696926304463
LMAVTTPKV	9	Oxidation (M)	_LM(Oxidation (M))AVTTPKV_		LM(1)AVTTPKV		LM(77)AVTTPKV	0	0	1			REV__ENST00000466373.1_1_22:19443242-19444153:-|nuORF	REV__ENST00000466373.1_1_22:19443242-19444153:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7515869140625	2	488.280803	974.547053	0.30698	0.00014989	3.4768	0.0016976	3.7838	0.0018475	488.28265763407825	74.806	1.1341	74.806	74.172	75.307	0					48	27	2	0	0	0	0.023007	1	9236	9236		76.774	29.117	1	91289	+		44823	33035	30999	31050	50291	50291		905			0.058761688566846715
LMAWEWPR	8	Unmodified	_LMAWEWPR_					0	0	0			REV__ENST00000497043.5_1_X:153056345-153059781:-|nuORF	REV__ENST00000497043.5_1_X:153056345-153059781:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	544.770937	1087.52732	-0.45635	-0.00024861	-1.2842	-0.00069958	-1.7405	-0.00094819	544.7704774825489	87.709	0.37644	87.531	87.28	87.656	-0.17875					12	8	2	0	0	0	0.027866	1	10633	10633		29.15	0	1	58416	+		44824	33843	31000	31051	50292	50292					-0.012941623634333155
LMAWEWPR	8	Unmodified	_LMAWEWPR_					0	0	0			REV__ENST00000497043.5_1_X:153056345-153059781:-|nuORF	REV__ENST00000497043.5_1_X:153056345-153059781:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3163452148438	2	544.770937	1087.52732	0.18742	0.0001021	-2.0426	-0.0011128	-1.8552	-0.0010107	545.271402467017	87.698	0.52856	87.562	87.346	87.874	-0.13613					15	12	2	0	0	0	0.027866	1	10666	10666		15.642	0	1	56715	+		44825	33843	31000	31051	50293	50293					-0.012941623634333155
LMCSKPDDP	9	Unmodified	_LMCSKPDDP_					0	0	0		AK5|p.E32D|1|0.42|ENSG00000154027|chr1:77286976-77286976|A/C|missense_variant	AK5|p.E32D|1|0.42|ENSG00000154027|chr1:77286976-77286976|A/C|missense_variant	AK5|p.E32D|1|0.42|ENSG00000154027|chr1:77286976-77286976|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.27838134765625	2	503.222628	1004.4307	-0.16944	-8.5267E-05	0.50964	0.00025646	0.3402	0.0001712	503.2228039737579	79.868	0.33818	79.718	79.57	79.908	-0.15051					11	7	2	0	0	0	0.024405	1	9544	9544		53.351	20.539	1	53766			44826	56	31001	31052	50294	50294					-0.07133517705540271
LMCSKSCCVY	10	Carbamidomethyl (C),Oxidation (M)	_LM(Oxidation (M))C(Carbamidomethyl (C))SKSCCVY_	LMC(0.914)SKSC(0.043)C(0.043)VY	LM(1)CSKSCCVY	LMC(13)SKSC(-13)C(-13)VY	LM(69)CSKSCCVY	0	1	1		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.2429809570312	2	605.24218	1208.46981	-0.38025	-0.00023015	3.1862	0.0019284	2.8059	0.0016983	605.2438402467284	70.092	0.57696	69.842	69.566	70.143	-0.25063					42	13	4	0	0	0	0.67706	1	8173	8173		68.787	6.6794	3	1788200			44827	10251	31002	31053	50295	50295	143	434			-0.12608876737795072
LMCSKSCCVY	10	Carbamidomethyl (C),Oxidation (M)	_LM(Oxidation (M))C(Carbamidomethyl (C))SKSCCVY_					0	1	1		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	605.24218	1208.46981	-0.88793	-0.00053741	3.5215	0.0021313	2.6335	0.0015939	605.2440821558706	70.166	0.61983	69.899	69.578	70.198	-0.26725	0.042639	0.00048665	NaN	68.787	45	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1815100			44828	10251	31002	31053			143	434			-0.12608876737795072
LMDAVALSCL	10	Unmodified	_LMDAVALSCL_					0	0	0			REV__ENSG00000124089|ENST00000243911|MC3R	REV__ENSG00000124089|ENST00000243911|MC3R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.264296	1034.51404	-0.19908	-0.00010318	1.9205	0.00099531	1.7214	0.00089213	518.2660912981588	102.68	0.28948	102.67	102.5	102.79	-0.0046082					11	6	3	0	0	0	0.03519	1	13060	13060		84.916	0	1	125520	+		44829	22729	31003	31054	50296	50296					-0.0018378125769231701
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.7662353515625	2	527.765517	1053.51648	-0.52668	-0.00027796	0.044566	2.3521E-05	-0.48211	-0.00025444	527.7651785215528	56.952	0.62447	56.788	56.497	57.122	-0.16431					60	17	4	0	0	0	0.31247	1	6347	6347		73.975	8.1716	1	2316500			44830	5139	31004	31055	50297	50297					-0.008136095283589384
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.7661743164062	2	527.765517	1053.51648	-0.51235	-0.0002704	0.20234	0.00010679	-0.31001	-0.00016361	527.7654177078206	56.916	1.0817	56.749	56.443	57.524	-0.1672					63	27	4	0	0	0	0.13494	1	6180	6180		102.77	25.927	1	2717900			44831	5139	31004	31055	50298	50298					-0.008136095283589384
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.7655639648438	2	527.765517	1053.51648	0.02371	1.2514E-05	-0.37811	-0.00019955	-0.3544	-0.00018704	527.7651220040913	57.011	0.98858	56.809	56.443	57.431	-0.20209					58	26	4	0	0	0	0.33245	1	6187	6187		71.296	7.9894	1	3081000			44832	5139	31004	31055	50299	50299					-0.008136095283589384
LMDKTQKV	8	Unmodified	_LMDKTQKV_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.7687072753906	2	481.770603	961.526652	-0.79794	-0.00038443	-3.6401	-0.0017537	-4.438	-0.0021381	481.7687003468187	44.497	0.88705	44.277	43.936	44.823	-0.21939					49	23	3	0	0	0	0.50239	1	4144	4144		85.359	0.44396	1	5009500			44833	9239	31005	31056	50300	50300					0.044349981968935026
LMDLCAQKP	9	Unmodified	_LMDLCAQKP_					0	0	0		ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.277099609375	2	509.756638	1017.49872	-0.22449	-0.00011444	3.8337	0.0019542	3.6092	0.0018398	509.75842596238607	33.913	0.35958	33.908	33.753	34.112	-0.0045624					9	8	2	0	0	0	0.023181	1	2488	2488		42.396	0	1	44648			44834	10326	31006	31057	50301	50301					-0.009326480548565996
LMDPWPFGF	9	Unmodified	_LMDPWPFGF_					0	0	0			REV__ENSG00000145423|ENST00000274063|SFRP2	REV__ENSG00000145423|ENST00000274063|SFRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.30126953125	2	555.259871	1108.50519	-0.042668	-2.3692E-05	-1.1393	-0.00063262	-1.182	-0.00065631	555.7607182489808	46.371	0.13275	46.423	46.308	46.441	0.051395					5	3	2	0	0	0	0.024517	1	4510	4510		19.36	0	1	49232	+		44835	24407	31007	31058	50302	50302					-0.04472386831844233
LMDSTMLKL	9	Unmodified	_LMDSTMLKL_					0	0	0			REV__CADPS2|p.A1045T|1|0.47|ENSG00000081803|chr7:122388614-122388614|C/T|missense_variant	REV__CADPS2|p.A1045T|1|0.47|ENSG00000081803|chr7:122388614-122388614|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2799682617188	2	526.279946	1050.54534	-0.15461	-8.1368E-05	0.7017	0.00036929	0.54709	0.00028792	526.2799400272917	44.029	0.89956	44.066	43.781	44.681	0.0369					45	25	2	0	0	0	0.31037	1	4117	4117		74.255	5.4682	1	5440300	+		44836	19237	31008	31059	50303	50303					0.022087917764110898
LMEAPSNPTL	10	Unmodified	_LMEAPSNPTL_					0	0	0			REV__ENSG00000138964|ENST00000444313|PARVG	REV__ENSG00000138964|ENST00000444313|PARVG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7691040039062	2	536.7708	1071.52705	-0.25081	-0.00013463	-3.3089	-0.0017761	-3.5597	-0.0019107	536.7690121483112	87.089	0.9583	87.054	86.734	87.693	-0.035362					48	15	4	0	0	0	0.54901	1	10902	10902		82.75	0	1	4653300	+		44837	23913	31009	31060	50304	50304					-0.005856268739080406
LMEDAVRW	8	Unmodified	_LMEDAVRW_					0	0	0			REV__ENST00000391911.5_1_1:209811967-209823327:-|nuORF	REV__ENST00000391911.5_1_1:209811967-209823327:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.77447509765625	2	510.252577	1018.4906	-0.96943	-0.00049465	0.99323	0.0005068	0.023797	1.2143E-05	510.252799225495	44.626	1.0947	44.626	44.247	45.342	0					41	31	3	0	0	0	0.027866	1	4229	4229		37.159	0	1	173030	+		44838	31587	31010	31061	50305	50305					-0.017904589799854875
LMEGSVPIRDS	11	Unmodified	_LMEGSVPIRDS_					0	0	0		nc|ENSG00000198488|Q6ZMB0-2|B3GNT6;ENSG00000198488|ENST00000622824|B3GNT6;nc|ENSG00000198488|Q6ZMB0-3|B3GNT6	nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8874816894531	3	401.872784	1202.59652	0.31855	0.00012802	-3.5309	-0.001419	-3.2124	-0.001291	401.8711877594567	30.943	1.1571	30.943	30.592	31.749	0					62	27	5	0	0	0	0.024811	1	1989	1989		43.419	10.668	1	1224300			44839	18648	31011	31062	50306	50306					0.00332832074855105
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7854919433594	2	510.786587	1019.55862	-1.0796	-0.00055143	0.95673	0.00048868	-0.12285	-6.2748E-05	510.78694479850947	41.056	0.56045	40.826	40.52	41.08	-0.2303					37	14	3	0	0	0	0.35998	2	3577	3577;3588		102.77	17.858	1	1884400			44840	2886	31012	31063	50307;50308	50307					0.0496241067066876
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.786587	1019.55862	-0.088516	-4.5213E-05	-0.071642	-3.6594E-05	-0.16016	-8.1807E-05	510.78646641638187	40.639	0.81025	40.639	40.414	41.225	0	-0.12943	-0.00047491	NaN	102.77	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693420			44841	2886	31012	31063							0.0496241067066876
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.786587	1019.55862	0.59576	0.0003043	-0.70481	-0.00036001	-0.10906	-5.5705E-05	510.7860874169073	40.903	0.88562	40.78	40.476	41.361	-0.12317	0.011299	-0.0011217	NaN	102.77	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693110			44842	2886	31012	31063							0.0496241067066876
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.786587	1019.55862	-0.45815	-0.00023402	0.43139	0.00022035	-0.02676	-1.3669E-05	510.7867531550418	40.945	0.731	40.968	40.663	41.394	0.023006	0.19964	3.8974E-05	NaN	102.77	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	653600			44843	2886	31012	31063							0.0496241067066876
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.786587	1019.55862	-0.48792	-0.00024922	0.37833	0.00019325	-0.10959	-5.5976E-05	510.7866888562158	40.77	0.64079	40.634	40.381	41.022	-0.13553	-0.13461	-1.5226E-05	NaN	102.77	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	879430			44844	2886	31012	31063							0.0496241067066876
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.786587	1019.55862	-0.37934	-0.00019376	0.43753	0.00022349	0.058188	2.9722E-05	510.78666175704063	40.992	0.64772	40.765	40.473	41.121	-0.2278	-0.0040427	4.5249E-05	NaN	102.77	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167700			44845	2886	31012	31063							0.0496241067066876
LMEIETETW	9	Unmodified	_LMEIETETW_					0	0	0			REV__ENST00000549857.1_1_17:6918973-6919195:+|nuORF	REV__ENST00000549857.1_1_17:6918973-6919195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	576.2947387695312	2	576.26809	1150.52163	0.055916	3.2223E-05	-2.126	-0.0012251	-2.0701	-0.0011929	576.7677064972203	59.833	0.96439	59.633	59.245	60.209	-0.20016					51	25	3	0	0	0	0.024436	1	6836	6836		38.806	5.2906	1	280760	+		44846	29095	31013	31064	50309	50309					-0.0476135045639694
LMEKDTILN	9	Unmodified	_LMEKDTILN_					0	0	0			REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2975463867188	2	538.78645	1075.55835	-0.20612	-0.00011105	-2.3835	-0.0012842	-2.5896	-0.0013953	539.2866383841198	58.645	1.3543	58.736	58.152	59.507	0.091217					46	36	2	0	0	0	0.020937	1	6705	6705		98.629	26.752	1	1942900	+		44847	20951	31014	31065	50310	50310					0.023589461601886796
LMEKVEVKN	9	Unmodified	_LMEKVEVKN_					0	0	0		CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3017578125	2	545.302267	1088.58998	-0.73037	-0.00039827	-0.25125	-0.00013701	-0.98162	-0.00053528	545.3021987952355	63.12	1.2968	63.12	62.729	64.026	0					110	34	4	0	0	0	0.12914	1	7367	7367		104.06	13.456	1	24837000			44848	447	31015	31066	50311	50311					0.049229389141146385
LMEKVEVKN	9	Unmodified	_LMEKVEVKN_					0	0	0		CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3020629882812	2	545.302267	1088.58998	-0.66641	-0.00036339	-0.25048	-0.00013659	-0.91689	-0.00049998	545.30223970613	63.426	1.5214	63.175	62.683	64.204	-0.25141					112	34	4	0	0	0	0.15366	1	7392	7392		98.629	2.5958	1	22862000			44849	447	31015	31066	50312	50312					0.049229389141146385
LMEKVEVKN	9	Unmodified	_LMEKVEVKN_					0	0	0		CIRH1A-SNTB2|2|fusion;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENSG00000141076|ENST00000314423|UTP4	CIRH1A-SNTB2|2|fusion	CIRH1A-SNTB2|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3009033203125	2	545.302267	1088.58998	-1.1241	-0.00061297	0.44233	0.00024121	-0.68176	-0.00037176	545.3023254796452	68.921	1.9004	68.66	68.063	69.963	-0.26166					84	45	3	0	0	0	0.15366	1	7979	7979		98.629	2.8142	1	2447000			44850	447	31015	31066	50313	50313					0.049229389141146385
LMEKYEELK	9	Unmodified	_LMEKYEELK_					0	0	0		nc|ENSG00000182923|Q96MT8-4|CEP63;nc|ENSG00000182923|Q96MT8-3|CEP63;nc|ENSG00000182923|Q96MT8-2|CEP63;ENSG00000182923|ENST00000675561|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	nc|ENSG00000182923|Q96MT8-4|CEP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	591.8092041015625	2	591.807382	1181.60021	-1.1646	-0.0006892	3.3459	0.0019801	2.1813	0.0012909	591.8096016512148	41.536	0.83357	41.536	41.153	41.987	0					63	23	4	0	0	0	0.32811	1	3761	3761		71.877	4.3838	1	2729100			44851	9176	31016	31067	50314	50314					0.01667501848669417
LMELHTQLL	9	Unmodified	_LMELHTQLL_					0	0	0			REV__ENST00000216039.9_1_22:39083023-39083575:-|nuORF	REV__ENST00000216039.9_1_22:39083023-39083575:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.3021240234375	2	549.30481	1096.59507	0.04961	2.7251E-05	-3.2522	-0.0017865	-3.2026	-0.0017592	549.3029806825865	78.876	1.0966	78.621	78.384	79.48	-0.25471					50	25	4	0	0	0	0.56934	1	9395	9395		54.776	0	1	1691300	+		44852	29308	31017	31068	50315	50315					0.050632427767368426
LMEYFSDL	8	Unmodified	_LMEYFSDL_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.8027648925781	2	509.233519	1016.45248	-0.43374	-0.00022088	3.569	0.0018174	3.1352	0.0015966	509.2353082450631	63.165	0.44138	62.926	62.654	63.096	-0.23926					20	10	3	0	0	0	0.027866	1	7316	7316		25.45	0	1	330750	+		44853	24641	31018	31069	50316	50316					-0.05508389685314796
LMFFICLF	8	Unmodified	_LMFFICLF_					0	0	0		ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3192749023438	2	517.26611	1032.51767	0.00093361	4.8292E-07	-0.47286	-0.00024459	-0.47193	-0.00024411	517.2652109530763	77.305	0.50723	77.305	76.919	77.426	0					12	11	2	0	0	0	0.027866	1	9534	9534		54.895	0	1	94490			44854	5301	31019	31070	50317	50317					0.002709333068196429
LMFGHDQKV	9	Unmodified	_LMFGHDQKV_					0	0	0			REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7686157226562	2	537.773677	1073.5328	-0.26692	-0.00014354	-2.5154	-0.0013527	-2.7823	-0.0014962	537.7721499474156	58.549	2.3568	58.368	57.267	59.624	-0.18134					154	59	4	0	0	0	0.23085	1	6396	6396		84.916	8.0689	1	8710200	+		44855	25583	31020	31071	50318	50318					-0.0010248357161799504
LMFLLRSSS	9	Unmodified	_LMFLLRSSS_					0	0	0		ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.2904052734375	2	527.291702	1052.56885	0.042688	2.2509E-05	-1.325	-0.00069869	-1.2824	-0.00067618	527.2907758574759	103.95	1.253	103.83	103.52	104.77	-0.12561					50	32	3	0	0	0	0.70186	1	12946	12946		45.952	1.8352	1	435140			44856	15876	31021	31072	50319	50319					0.044669736052583175
LMFSQFTDI	9	Oxidation (M)	_LM(Oxidation (M))FSQFTDI_		LM(1)FSQFTDI		LM(91)FSQFTDI	0	0	1		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6;ENST00000547138.5_1_12:50529516-50531570:-|nuORF;ENST00000546676.1_1_12:50529513-50531570:-|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;ENSG00000139624|ENST00000317551|CERS5;nc|ENSG00000139624|Q8N5B7-2|CERS5	ENSG00000172292|ENST00000305747|CERS6;ENSG00000139624|ENST00000317551|CERS5	ENSG00000172292|ENST00000305747|CERS6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2652587890625	2	559.26535	1116.51615	-0.47091	-0.00026336	0.41368	0.00023136	-0.057226	-3.2005E-05	559.265343842782	82.74	1.7562	82.766	81.332	83.088	0.026558					97	41	3	0	0	0	0.18915	1	10265	10265		90.777	8.4716	1	1518600			44857	8260;5348	31022	31073	50320	50320		219			-0.037450292482162695
LMFTTSRMA	9	Unmodified	_LMFTTSRMA_					0	0	0			REV__ENST00000473781.1_2_9:33262738-33264233:-|nuORF	REV__ENST00000473781.1_2_9:33262738-33264233:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3052368164062	2	529.262087	1056.50962	-0.3513	-0.00018593	-1.5824	-0.00083748	-1.9337	-0.0010234	529.763819767505	64.379	0.19165	64.123	63.999	64.191	-0.25563					9	4	3	0	0	0	0.024506	1	7299	7299		23.042	0	1	53782	+		44858	33253	31023	31074	50321	50321					-0.016372456805811453
LMFVMTVGKA	10	Unmodified	_LMFVMTVGKA_					0	0	0		ENST00000326361.7_2_3:179051926-179052001:+|nuORF	ENST00000326361.7_2_3:179051926-179052001:+|nuORF	ENST00000326361.7_2_3:179051926-179052001:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.276123046875	2	548.798306	1095.58206	-0.77077	-0.000423	2.2693	0.0012454	1.4986	0.00082242	548.7979458512449	46.764	0.14962	46.815	46.685	46.834	0.051395					5	3	2	0	0	0	0.03519	1	4567	4567		37.812	13.609	1	78025			44859	12281	31024	31075	50322	50322					0.038090883929953634
LMGIAGLKP	9	Unmodified	_LMGIAGLKP_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.27423095703125	2	450.272781	898.531009	-0.35559	-0.00016011	3.5419	0.0015948	3.1863	0.0014347	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	0.78069	1	11819	11819		40.573	1.5511	1	67958000			44860	2903	31025	31076	50323	50323					0.07768507410457914
LMGIAGLKP	9	Unmodified	_LMGIAGLKP_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2746887207031	2	450.272781	898.531009	-0.17068	-7.6855E-05	3.3267	0.0014979	3.156	0.0014211	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	0.78069	1	11722	11722		40.573	0	1	67707000			44861	2903	31025	31076	50324	50324					0.07768507410457914
LMGIGIKPNA	10	Unmodified	_LMGIGIKPNA_					0	0	0			REV__ENST00000471223.1_1_1:3548765-3548867:-|nuORF	REV__ENST00000471223.1_1_1:3548765-3548867:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8157653808594	2	507.294245	1012.57394	-0.5058	-0.00025659	-0.41489	-0.00021047	-0.92069	-0.00046706	507.29304336135135	103.99	0.5665	103.86	103.49	104.06	-0.12927					16	13	2	0	0	0	0.03519	1	12910	12910		34.173	5.9183	1	29820	+		44862	22270	31026	31077	50325	50325					0.06815277467865144
LMGISRGFGL	10	Oxidation (M)	_LM(Oxidation (M))GISRGFGL_		LM(1)GISRGFGL		LM(100)GISRGFGL	0	0	1		nc|ENSG00000112337|O00624|SLC17A2;ENSG00000112337|ENST00000377850|SLC17A2	nc|ENSG00000112337|O00624|SLC17A2	nc|ENSG00000112337|O00624|SLC17A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7877197265625	2	533.789327	1065.5641	0.84936	0.00045338	-3.8312	-0.0020451	-2.9819	-0.0015917	533.7871234989452	74.003	0.89381	74.003	73.741	74.635	0					55	20	4	0	0	0	0.34101	1	9048	9048		104.75	11.603	1	3076300			44863	3204	31027	31078	50326	50326		122			0.03394089462494776
LMGLSAQLD	9	Unmodified	_LMGLSAQLD_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2666931152344	2	474.24696	946.479368	-0.17789	-8.4365E-05	-3.0572	-0.0014499	-3.2351	-0.0015342	474.24542482167857	76.055	0.62303	75.782	75.542	76.165	-0.27266					27	15	2	0	0	0	0.024436	1	9017	9017		38.806	0	1	377610			44864	2842	31028	31079	50327	50327					0.003987189258737089
LMGWQSPQLS	10	Unmodified	_LMGWQSPQLS_					0	0	0			REV__ENSG00000013503|ENST00000228347|POLR3B	REV__ENSG00000013503|ENST00000228347|POLR3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.7822875976562	2	573.784241	1145.55393	-0.36545	-0.00020969	-2.7904	-0.0016011	-3.1559	-0.0018108	573.7827277938131	64.323	3.8502	64.131	62.696	66.546	-0.19243					217	96	4	0	0	0	0.94316	1	7256	7256		51.193	3.5354	1	6137800	+		44865	19958	31029	31080	50328	50328					-0.013025182627416143
LMGWVFLN	8	Unmodified	_LMGWVFLN_					0	0	0		ENST00000264954.4_1_4:7062504-7062588:-|nuORF	ENST00000264954.4_1_4:7062504-7062588:-|nuORF	ENST00000264954.4_1_4:7062504-7062588:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2601318359375	2	490.257131	978.499709	0.0031706	1.5544E-06	2.2423	0.0010993	2.2454	0.0011008	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.98906	1	13528	13528		39.021	3.4032	1	6674100			44866	11577	31030	31081	50329	50329					0.00959934376351157
LMHCQTTL	8	Carbamidomethyl (C)	_LMHC(Carbamidomethyl (C))QTTL_	LMHC(1)QTTL		LMHC(74)QTTL		0	1	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.23834228515625	2	502.238612	1002.46267	-0.14241	-7.1525E-05	-0.27042	-0.00013582	-0.41283	-0.00020734	502.2384636677859	44.938	0.99552	44.982	44.516	45.512	0.043877					60	28	4	0	0	0	0.6248	1	4272	4272		73.975	8.5094	1	1790000			44867	5042	31031	31082	50330	50330	64				-0.03846105231730235
LMHLFPPSL	9	Unmodified	_LMHLFPPSL_					0	0	0			REV__ENSG00000175520|ENST00000311659|UBQLN3	REV__ENSG00000175520|ENST00000311659|UBQLN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7708740234375	2	527.791338	1053.56812	-0.85682	-0.00045222	-2.86	-0.0015095	-3.7168	-0.0019617	527.7899712628738	47.307	2.3898	47.307	45.784	48.174	0					97	68	2	0	0	0	0.024354	1	4868	4868		38.806	24.142	1	1231400	+		44868	26957	31032	31083	50331	50331					0.04348178956206539
LMHLFPPSL	9	Unmodified	_LMHLFPPSL_					0	0	0			REV__ENSG00000175520|ENST00000311659|UBQLN3	REV__ENSG00000175520|ENST00000311659|UBQLN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7702026367188	2	527.791338	1053.56812	-0.2788	-0.00014715	-3.9044	-0.0020607	-4.1832	-0.0022079	527.789370146065	47.506	2.5116	47.353	45.886	48.398	-0.15301					102	71	2	0	0	0	0.024	1	4894	4894		55.504	0	1	1235800	+		44869	26957	31032	31083	50332	50332					0.04348178956206539
LMIASLGGHA	10	Unmodified	_LMIASLGGHA_					0	0	0		ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7458190917969	2	485.262945	968.511337	-0.78138	-0.00037918	0.13382	6.4938E-05	-0.64756	-0.00031424	485.2630217132743	62.548	0.29696	62.364	62.111	62.408	-0.18386					9	7	2	0	0	0	0.03519	1	7021	7021		35.618	0	1	242340			44870	10137	31033	31084	50333	50333					0.025821313996971185
LMIASSLLN	9	Unmodified	_LMIASSLLN_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2828369140625	2	481.272978	960.531403	-2.227	-0.0010718	-0.41789	-0.00020112	-2.6449	-0.0012729	481.2724506354499	52.049	0.50467	51.78	51.62	52.125	-0.26903					32	13	3	0	0	0	0.017891	1	5365	5365		96.19	2.995	1	475320			44871	3503	31034	31085	50334	50334					0.049558823396409935
LMIASSLLN	9	Unmodified	_LMIASSLLN_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.283203125	2	481.272978	960.531403	0.65114	0.00031337	-3.4988	-0.0016839	-2.8476	-0.0013705	481.2709154706193	51.916	0.4387	51.732	51.524	51.963	-0.18405					27	11	3	0	0	0	0.017891	1	5340	5340		84.916	0	1	521760			44872	3503	31034	31085	50335	50335					0.049558823396409935
LMIASSLLN	9	Unmodified	_LMIASSLLN_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.272978	960.531403	0.32856	0.00015813	-0.40908	-0.00019688	-0.080514	-3.8749E-05	481.27228242657566	51.774	0.86333	51.774	51.568	52.431	0	0.027423	0.00064733	NaN	96.19	49	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448240			44873	3503	31034	31085							0.049558823396409935
LMIASSLLN	9	Unmodified	_LMIASSLLN_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.272978	960.531403	-1.0798	-0.00051969	1.256	0.00060446	0.17612	8.4764E-05	481.27309862762934	51.666	0.83061	51.753	51.445	52.275	0.087006	0.0061489	0.00225	NaN	96.19	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414900			44874	3503	31034	31085							0.049558823396409935
LMIFGTAKFV	10	Unmodified	_LMIFGTAKFV_					0	0	0			REV__ENSG00000180919|ENST00000316529|OR56B4	REV__ENSG00000180919|ENST00000316529|OR56B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2658081054688	2	563.820095	1125.62564	-0.49513	-0.00027917	0.4197	0.00023664	-0.075429	-4.2529E-05	563.820460504242	73.292	0.47218	73.102	72.844	73.316	-0.19026					21	11	2	0	0	0	0.03519	1	8577	8577		51.335	7.2187	1	459320	+		44875	27374	31035	31086	50336	50336					0.0678502116177242
LMIFICVTI	9	Unmodified	_LMIFICVTI_					0	0	0			REV__ENSG00000198121|ENST00000683809|LPAR1	REV__ENSG00000198121|ENST00000683809|LPAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.7958374023438	2	526.797774	1051.581	0.18529	9.761E-05	-1.1982	-0.0006312	-1.0129	-0.00053359	526.7969624843922	79.117	1.3094	78.863	78.212	79.522	-0.25471					60	30	4	0	0	0	0.70186	1	9455	9455		45.952	6.9305	1	815980	+		44876	28386	31036	31087	50337	50337					0.05726874024094286
LMIGFIFV	8	Unmodified	_LMIGFIFV_					0	0	0		ENST00000372771.4_1_1:40706259-40706442:+|nuORF	ENST00000372771.4_1_1:40706259-40706442:+|nuORF	ENST00000372771.4_1_1:40706259-40706442:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	470.2723693847656	2	470.27225	938.529947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.711	1	96.588	96.088	97.088	-0.12305								0	0	0	0.81293	1	11965	11965		33.493	0	1				44877	13054	31037	31088	50338	50338					0.05822293041535431
LMIGMAHVLV	10	Unmodified	_LMIGMAHVLV_					0	0	0		ENST00000532094.5_1_11:420655-431830:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2454833984375	2	542.306298	1082.59804	-0.80625	-0.00043723	4.2577	0.002309	3.4514	0.0018717	542.3089261598475	89.587	0.70504	89.587	89.27	89.975	0					26	16	2	0	0	0	0.03519	1	11340	11340		26.796	0	1	150250			44878	16280	31038	31089	50339	50339					0.060047946298709576
LMIGRLHCS	9	Unmodified	_LMIGRLHCS_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2948608398438	2	515.270247	1028.52594	-0.03297	-1.6988E-05	1.141	0.00058791	1.108	0.00057092	515.2713144944705	54.193	0.5611	53.948	53.775	54.337	-0.2453					28	17	2	0	0	0	0.024487	1	5693	5693		24.203	3.7209	1	273730			44879	17725	31039	31090	50340	50340					0.01281880276155789
LMIGRLHCS	9	Unmodified	_LMIGRLHCS_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.270247	1028.52594	-0.21717	-0.0001119	2.1737	0.0011201	1.9566	0.0010082	515.2715128218019	53.978	0.41743	53.978	53.726	54.144	0	0.064564	-8.6407E-05	NaN	17.365	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344320			44880	17725	31039	31090							0.01281880276155789
LMIGRLHCS	9	Unmodified	_LMIGRLHCS_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|175|1|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.270247	1028.52594	-0.12584	-6.4842E-05	2.1168	0.0010907	1.991	0.0010259	515.2713844249923	54.02	0.37633	53.873	53.711	54.088	-0.14723	-0.040921	-0.00014506	NaN	17.365	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322290			44881	17725	31039	31090							0.01281880276155789
LMIIKNCN	8	Unmodified	_LMIIKNCN_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.27227783203125	2	474.753898	947.493244	0.97651	0.0004636	2.8878	0.001371	3.8643	0.0018346	474.75518839184383	17.585	0.27663	17.443	17.276	17.552	-0.14278					9	5	2	0	0	0	0.027866	1	172	172		19.36	0	1	16421	+		44882	24922	31040	31091	50341	50341					0.017396731533153797
LMIMALFPY	9	Unmodified	_LMIMALFPY_					0	0	0			REV__ENST00000513627.1_1_5:175921035-175923719:+|nuORF	REV__ENST00000513627.1_1_5:175921035-175923719:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.7403564453125	2	549.789949	1097.56535	-0.21143	-0.00011624	-3.1537	-0.0017338	-3.3651	-0.0018501	549.7881027390719	42.421	0.72247	42.298	41.961	42.683	-0.12299					41	18	3	0	0	0	0.024475	1	3872	3872		21.702	0	1	894010	+		44883	22047	31041	31092	50342	50342					0.02046587507015829
LMIMEEDV	8	Oxidation (M)	_LMIM(Oxidation (M))EEDV_		LMIM(1)EEDV		LM(-42)IM(42)EEDV	0	0	1			REV__nc|ENSG00000146857|Q7Z7C7|STRA8	REV__nc|ENSG00000146857|Q7Z7C7|STRA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.2980651855469	2	498.224836	994.43512	0.13	6.477E-05	0.99749	0.00049697	1.1275	0.00056174	498.2252187901183	61.912	0.63936	61.685	61.375	62.015	-0.22663					27	16	2	0	0	0	0.027866	1	7160	7160		62.978	17.026	2	309330	+		44884	24517	31042	31093	50343	50343		728			-0.0623205328261065
LMIPIRNT	8	Unmodified	_LMIPIRNT_					0	0	0			REV__ENST00000470072.1_1_7:151167581-151168580:-|nuORF	REV__ENST00000470072.1_1_7:151167581-151168580:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2821350097656	2	479.281137	956.547722	0.71739	0.00034383	-0.76677	-0.0003675	-0.049379	-2.3667E-05	479.2806546948124	20.542	0.6908	20.346	20.088	20.779	-0.19577					27	13	3	0	0	0	0.71833	1	563	563		65.803	5.5092	1	434950	+		44885	33145	31043	31094	50344	50344					0.06771008296379932
LMISYLMF	8	2 Oxidation (M)	_LM(Oxidation (M))ISYLM(Oxidation (M))F_		LM(1)ISYLM(1)F		LM(91)ISYLM(91)F	0	0	2		nc|ENSG00000171262|Q52LJ0-1|FAM98B	nc|ENSG00000171262|Q52LJ0-1|FAM98B	nc|ENSG00000171262|Q52LJ0-1|FAM98B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2852172851562	2	525.255939	1048.49733	-0.633	-0.00033249	1.2334	0.00064783	0.60036	0.00031534	525.7586422995699	66.529	0.38202	66.306	65.986	66.368	-0.22374					11	9	2	0	0	0	0.027866	1	7610	7610		90.939	28.832	1	112300			44886	18514	31044	31095	50345	50345		586;587			-0.024982821435969527
LMISYVQV	8	Unmodified	_LMISYVQV_					0	0	0		ENST00000559889.5_1_15:78449787-78454580:+|nuORF	ENST00000559889.5_1_15:78449787-78454580:+|nuORF	ENST00000559889.5_1_15:78449787-78454580:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7607421875	2	476.762246	951.50994	0.35086	0.00016728	-3.1132	-0.0014843	-2.7624	-0.001317	476.760589887112	19.195	0.54354	19.077	18.854	19.397	-0.11872					24	10	3	0	0	0	0.59392	2	373	364;373		76.847	26.822	1	279930			44887	16789	31045	31096	50346;50347	50347					0.03224497310930019
LMITHHAVI	9	Unmodified	_LMITHHAVI_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7937622070312	2	517.794412	1033.57427	-0.22961	-0.00011889	-0.97832	-0.00050657	-1.2079	-0.00062546	517.793553449622	100.65	1.2028	100.65	100.04	101.24	0					48	28	2	0	0	0	0.33184	1	12897	12897		71.378	10.974	1	337320			44888	7724	31046	31097	50348	50348					0.05882697187735175
LMITHHAVI	9	Unmodified	_LMITHHAVI_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7933349609375	2	517.794412	1033.57427	0.35641	0.00018455	-1.7425	-0.00090226	-1.3861	-0.00071772	517.7932431999924	100.65	1.3018	100.51	100.19	101.5	-0.13364					55	31	2	0	0	0	0.52323	1	12486	12486		57.811	11.859	1	398830			44889	7724	31046	31097	50349	50349					0.05882697187735175
LMITHHAVI	9	Unmodified	_LMITHHAVI_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7929077148438	2	517.794412	1033.57427	0.97355	0.0005041	-2.3756	-0.0012301	-1.4021	-0.000726	517.7930151292054	99.886	2.0152	99.761	97.848	99.863	-0.12504					66	51	2	0	0	0	0.26797	1	12402	12402		79.939	8.0618	1	554780			44890	7724	31046	31097	50350	50350					0.05882697187735175
LMITHHAVI	9	Unmodified	_LMITHHAVI_					0	0	0		nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	nc|ENSG00000167695|Q8TBR7-1|TLCD3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7933959960938	2	517.794412	1033.57427	0.18535	9.5972E-05	-1.6864	-0.00087323	-1.5011	-0.00077726	517.7933340082673	100.76	1.539	100.58	100.24	101.78	-0.17178					60	37	2	0	0	0	0.36105	1	12501	12501		68.485	6.3773	1	301950			44891	7724	31046	31097	50351	50351					0.05882697187735175
LMIVEELIT	9	Unmodified	_LMIVEELIT_					0	0	0			REV__ENST00000551727.5_1_12:104520004-104522249:-|nuORF	REV__ENST00000551727.5_1_12:104520004-104522249:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.801513671875	2	530.801568	1059.58858	-0.041967	-2.2276E-05	0.037899	2.0117E-05	-0.0040676	-2.1591E-06	530.8014096275714	101.08	0.966	100.96	100.71	101.68	-0.12576					52	22	3	0	0	0	0.25032	1	12545	12545		82.305	2.854	1	1241600	+		44892	34940	31047	31098	50352	50352					0.06117304825352221
LMKDIDILN	9	Unmodified	_LMKDIDILN_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7969970703125	2	537.796817	1073.57908	-0.90747	-0.00048803	1.0783	0.00057992	0.17086	9.1886E-05	537.7972456256986	77.675	3.3997	77.691	76.575	79.974	0.015907					185	81	3	0	0	0	0.42604	1	9546	9546		64.207	4.089	1	2174400			44893	6323	31048	31099	50353	50353					0.045235365398411886
LMKEALAR	8	Unmodified	_LMKEALAR_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7684020996094	2	466.273312	930.532072	1.7107	0.00079764	3.3717	0.0015721	5.0824	0.0023698	466.27463552307336	74.325	0.46437	74.325	74.128	74.593	0					12	10	2	0	0	0	0.027866	1	9080	9080		50.025	9.2464	1	122090	+		44894	27175	31049	31100	50354	50354					0.06402721779340936
LMKEGEHQL	9	Unmodified	_LMKEGEHQL_					0	0	0		nc|ENSG00000244482|Q6PI73-2|LILRA6;ENST00000444199.1_1_19:55208384-55209490:+|nuORF;nc|ENSG00000244482|Q6PI73|LILRA6;ENSG00000244482|ENST00000396365|LILRA6;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3	nc|ENSG00000244482|Q6PI73-2|LILRA6	nc|ENSG00000244482|Q6PI73-2|LILRA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7761840820312	2	542.776416	1083.53828	-0.32604	-0.00017697	0.18738	0.00010171	-0.13865	-7.5258E-05	542.776414331956	67.603	1.315	67.603	67.285	68.6	0					103	33	6	0	0	0	0.12602	2	8062	8062;8075		104.75	16.992	1	15261000			44895	10356	31050	31101	50355;50356	50355					-0.00014804779789301392
LMKEGEHQL	9	Unmodified	_LMKEGEHQL_					0	0	0		nc|ENSG00000244482|Q6PI73-2|LILRA6;ENST00000444199.1_1_19:55208384-55209490:+|nuORF;nc|ENSG00000244482|Q6PI73|LILRA6;ENSG00000244482|ENST00000396365|LILRA6;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3	nc|ENSG00000244482|Q6PI73-2|LILRA6	nc|ENSG00000244482|Q6PI73-2|LILRA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.7762451171875	2	542.776416	1083.53828	-0.48424	-0.00026284	0.46674	0.00025334	-0.0175	-9.4985E-06	542.776579577496	67.98	1.5263	67.691	67.268	68.794	-0.28834					105	38	4	0	0	0	0.15029	2	8088	8088;8100		99.375	0	1	14879000			44896	10356	31050	31101	50357;50358	50357					-0.00014804779789301392
LMKFFPSN	8	Unmodified	_LMKFFPSN_					0	0	0		ENST00000374864.8_3_20:33077078-33077186:+|nuORF	ENST00000374864.8_3_20:33077078-33077186:+|nuORF	ENST00000374864.8_3_20:33077078-33077186:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.2798767089844	2	492.254588	982.494624	-0.34398	-0.00016933	2.5087	0.0012349	2.1647	0.0010656	492.25574947851015	72.135	0.57523	71.86	71.666	72.241	-0.27509					18	13	2	0	0	0	0.027866	1	8427	8427		11.511	0	1	85835			44897	13137	31051	31102	50359	50359					0.002676305137356394
LMKIIHNYG	9	Unmodified	_LMKIIHNYG_					0	0	0		ENST00000472063.5_1_3:197712648-197723234:+|nuORF	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.810546875	2	544.799694	1087.58484	-0.96862	-0.00052771	-2.8005	-0.0015257	-3.7691	-0.0020534	544.7979988003804	44.686	0.67598	44.441	44.08	44.756	-0.2444					42	17	3	0	0	0	0.024354	1	4116	4116		47.916	10.756	1	963030			44898	14981	31052	31103	50360	50360					0.04454679842137921
LMKKRQVK	8	Unmodified	_LMKKRQVK_					0	0	0			REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2718505859375	2	515.831329	1029.6481	0.041576	2.1446E-05	-1.5212	-0.00078467	-1.4796	-0.00076322	515.830729592598	39.556	0.13478	39.556	39.459	39.594	0					5	3	2	0	0	0	0.027866	1	3410	3410		13.775	0	1	48516	+		44899	21345	31053	31104	50361	50361					0.1344666535005672
LMKLLPPPI	9	Unmodified	_LMKLLPPPI_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.32720947265625	2	511.327556	1020.64056	0.6587	0.00033681	-1.5042	-0.00076912	-0.84547	-0.00043231	511.32665137980894	96.169	1.2768	96.171	95.739	97.016	0.0020676					65	29	3	0	0	0	0.88411	2	12206	12193;12206		33.516	6.7195	1	1631100			44900	8611	31054	31105	50362;50363	50363					0.13106513029754296
LMKLQKTLQ	9	Unmodified	_LMKLQKTLQ_					0	0	0		CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.83447265625	2	551.836277	1101.658	0.42991	0.00023724	-4.2461	-0.0023432	-3.8162	-0.0021059	551.8338167972548	65.968	0.58044	65.968	65.643	66.224	0					47	14	4	0	0	0	0.20967	1	7839	7839		87.754	5.5138	1	3552300			44901	613	31055	31106	50364	50364					0.11123808564775572
LMKLYHLGE	9	Unmodified	_LMKLYHLGE_					0	0	0		ENST00000588191.5_3_18:11897564-11905747:-|nuORF;ENST00000589267.5_3_18:11897564-11906224:-|nuORF;ENST00000590501.5_3_18:11897564-11902321:-|nuORF	ENST00000588191.5_3_18:11897564-11905747:-|nuORF	ENST00000588191.5_3_18:11897564-11905747:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3269653320312	2	552.299527	1102.5845	-0.096419	-5.3252E-05	1.6287	0.00089952	1.5323	0.00084627	552.3011192831236	54.209	0.3309	53.964	53.804	54.135	-0.2453					23	10	3	0	0	0	0.024436	1	5704	5704		30.504	14.03	1	382650			44902	17283	31056	31107	50365	50365					0.03731260122299318
LMKNKRDS	8	Unmodified	_LMKNKRDS_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.793212890625	2	496.271301	990.528049	-1.4512	-0.0007202	1.2146	0.00060276	-0.23664	-0.00011744	496.2715156302017	38.768	0.82911	38.603	38.251	39.081	-0.16458					56	22	4	0	0	0	0.027866	1	3227	3227		42.474	11.971	1	4490800			44903	1787	31057	31108	50366	50366					0.032406322856331826
LMKPGILIK	9	Unmodified	_LMKPGILIK_					0	0	0			REV__ENST00000462934.5_1_7:6449470-6461666:-|nuORF;REV__ENSG00000164535|ENST00000297056|DAGLB	REV__ENSG00000164535|ENST00000297056|DAGLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7142333984375	2	506.833006	1011.65146	0.0038967	1.975E-06	-1.2686	-0.00064295	-1.2647	-0.00064097	506.83128514302877	34.306	0.41607	34.082	33.923	34.339	-0.22412					13	10	2	0	0	0	0.024541	1	2494	2494		12.959	0	1	217330	+		44904	32919;25769	31058	31109	50367	50367					0.14609915404059848
LMKQFGQP	8	Unmodified	_LMKQFGQP_					0	0	0			REV__ENST00000555567.5_1_14:75422059-75422119:-|nuORF	REV__ENST00000555567.5_1_14:75422059-75422119:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7668151855469	2	474.752213	947.489873	0.35289	0.00016753	-3.5558	-0.0016881	-3.2029	-0.0015206	474.74990611905895	55.062	0.2129	54.911	54.82	55.033	-0.15036					8	5	2	0	0	0	0.027866	1	6021	6021		25.45	0	1	102010	+		44905	35011	31059	31110	50368	50368					0.014027463709680887
LMKQKLTV	8	Unmodified	_LMKQKLTV_					0	0	0			REV__ENST00000495369.1_1_2:128262943-128263081:-|nuORF	REV__ENST00000495369.1_1_2:128262943-128263081:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.21697998046875	2	480.799163	959.583773	0.57857	0.00027818	-3.6914	-0.0017748	-3.1128	-0.0014967	480.7972546155108	37.327	0.69099	37.134	36.889	37.58	-0.193					36	17	3	0	0	0	0.027866	1	2966	2966		35.618	0	1	646990	+		44906	33801	31060	31111	50369	50369					0.10236465473235512
LMKRKELI	8	Oxidation (M)	_LM(Oxidation (M))KRKELI_		LM(1)KRKELI		LM(99)KRKELI	0	0	1		ENST00000558632.1_1_15:45722994-45723285:+|nuORF;ENSG00000166920|ENST00000396650|C15orf48	ENST00000558632.1_1_15:45722994-45723285:+|nuORF	ENST00000558632.1_1_15:45722994-45723285:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	523.821533203125	2	523.823169	1045.63179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.099	1	48.002	47.502	48.502	-0.097553								0	0	0	0.35706	1	4752	4752		99.375	8.5983	1				44907	7627	31061	31112	50370	50370		314			0.11079539393290361
LMKVEGVPF	9	Unmodified	_LMKVEGVPF_					0	0	0			REV__ENST00000470338.1_1_22:22316666-22317191:-|nuORF	REV__ENST00000470338.1_1_22:22316666-22317191:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2803039550781	2	510.283346	1018.55214	-0.047123	-2.4046E-05	3.1987	0.0016323	3.1516	0.0016082	510.28464798141994	61.401	0.53769	61.401	61.144	61.682	0					22	13	2	0	0	0	0.024412	1	7107	7107		24.203	0	1	448750	+		44908	21039	31062	31113	50371	50371					0.04360472719304198
LMKWKGPF	8	Unmodified	_LMKWKGPF_					0	0	0			REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.77880859375	2	503.780773	1005.54699	-0.51144	-0.00025766	-3.9022	-0.0019659	-4.4136	-0.0022235	503.77865186540316	23.039	2.1803	22.978	21.334	23.514	-0.06086					89	47	3	0	0	0	0.98906	1	850	850		39.021	1.8624	1	789290	+		44909	32283	31063	31114	50372	50372					0.04444213647343531
LMLAADIMR	9	Unmodified	_LMLAADIMR_					0	0	0		nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	nc|ENSG00000173805|P54257-3|HAP1	nc|ENSG00000173805|P54257-3|HAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2821044921875	2	517.28028	1032.54601	-0.088022	-4.5532E-05	3.8302	0.0019813	3.7422	0.0019357	517.282275500527	91.584	1.1057	91.594	91.317	92.423	0.0094147					45	26	2	0	0	0	0.20967	1	11534	11534		87.754	16.459	1	829810			44910	8412	31064	31115	50373	50373					0.031036312161177193
LMLAALTGR	9	Unmodified	_LMLAALTGR_					0	0	0		nc|ENSG00000165138|Q68DC2-4|ANKS6;ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-3|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	nc|ENSG00000165138|Q68DC2-4|ANKS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.28363037109375	2	473.281137	944.547722	-0.022896	-1.0836E-05	-4.4001	-0.0020825	-4.423	-0.0020933	473.2788451216643	53.978	0.6735	53.733	53.525	54.198	-0.2453					49	21	4	0	0	0	0.024205	1	5664	5664		63.306	17.334	1	3191800			44911	7369	31065	31116	50374	50374					0.07323008296384614
LMLCLPVLE	9	Unmodified	_LMLCLPVLE_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3160400390625	2	515.787407	1029.56026	-0.52382	-0.00027018	0.12133	6.258E-05	-0.40249	-0.0002076	515.7874766599423	76.21	0.76339	76.21	75.956	76.719	0					47	18	4	0	0	0	0.024412	1	9360	9360		50.025	20.854	1	558250			44912	18350	31066	31117	50375	50375					0.046662836444056666
LMLCLPVLE	9	Unmodified	_LMLCLPVLE_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.787407	1029.56026	-0.48857	-0.000252	-0.076208	-3.9307E-05	-0.56478	-0.0002913	515.7874542714111	76.426	0.99064	76.198	75.74	76.731	-0.22843	-0.021476	-6.3773E-05	NaN	47.916	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487240			44913	18350	31066	31117							0.046662836444056666
LMLCLPVLE	9	Unmodified	_LMLCLPVLE_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B;EXOC6B|p.V352Cfs*3|1|0.16|ENSG00000144036|chr2:72513245-72513246|-/A|frameshift_variant	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.787407	1029.56026	-0.20826	-0.00010742	-0.19294	-9.9518E-05	-0.4012	-0.00020693	515.7873019943675	76.238	0.67616	76.25	75.976	76.653	0.011635	0.030436	-0.00018419	NaN	47.916	41	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422150			44914	18350	31066	31117							0.046662836444056666
LMLDSIEKI	9	Oxidation (M)	_LM(Oxidation (M))LDSIEKI_		LM(1)LDSIEKI		LM(150)LDSIEKI	0	0	1			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2962036132812	2	539.29665	1076.57875	-0.21094	-0.00011376	-3.603	-0.0019431	-3.814	-0.0020569	539.2943051635774	87.592	1.2345	87.592	87.321	88.555	0					83	29	4	0	0	0	0.021872	1	11038	11038		148.04	13.232	1	2299100	+		44915	23311	31067	31118	50376	50376		692			0.04352116819973162
LMLFVLNV	8	Oxidation (M)	_LM(Oxidation (M))LFVLNV_		LM(1)LFVLNV		LM(47)LFVLNV	0	0	1		ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7710876464844	2	482.780439	963.546325	0.13538	6.5358E-05	3.6634	0.0017686	3.7988	0.001834	482.7820850093017	49.644	1.0866	49.644	49.324	50.411	0					87	30	4	0	0	0	0.94001	1	5140	5140		46.766	7.9603	1	2756900			44916	15435	31068	31119	50377	50377		519			0.06309374207637575
LMLGVTLPN	9	Unmodified	_LMLGVTLPN_					0	0	0		ENSG00000106404|ENST00000308344|CLDN15	ENSG00000106404|ENST00000308344|CLDN15	ENSG00000106404|ENST00000308344|CLDN15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7774963378906	2	479.275521	956.536489	0.41467	0.00019874	2.5663	0.00123	2.981	0.0014287	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	0.85329	1	10438	10438		35.618	0.41757	1	1015600			44917	2787	31069	31120	50378	50378					0.05648186202245142
LMLIPLGDS	9	Unmodified	_LMLIPLGDS_					0	0	0		ENST00000433688.2_2_11:63529479-63529599:-|nuORF	ENST00000433688.2_2_11:63529479-63529599:-|nuORF	ENST00000433688.2_2_11:63529479-63529599:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2808837890625	2	479.767529	957.520504	-0.69709	-0.00033444	0.71595	0.00034349	0.018855	9.0459E-06	479.76794050297957	85.403	0.70187	85.429	85.119	85.821	0.025536					36	16	3	0	0	0	0.024443	1	10656	10656		26.796	0	1	510760			44918	14233	31070	31121	50379	50379					0.04004479965351493
LMLIPLGDS	9	Unmodified	_LMLIPLGDS_					0	0	0		ENST00000433688.2_2_11:63529479-63529599:-|nuORF	ENST00000433688.2_2_11:63529479-63529599:-|nuORF	ENST00000433688.2_2_11:63529479-63529599:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.767529	957.520504	0.66038	0.00031683	-0.38827	-0.00018628	0.27212	0.00013055	479.76732754687475	85.411	0.38151	85.273	85.07	85.452	-0.13752	-0.11905	-0.00019795	NaN	26.796	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65387			44919	14233	31070	31121							0.04004479965351493
LMLKAKKID	9	Unmodified	_LMLKAKKID_					0	0	0			REV__nc|ENSG00000115652|Q8NBZ7|UXS1	REV__nc|ENSG00000115652|Q8NBZ7|UXS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.3313598632812	2	530.33337	1058.65219	-0.91201	-0.00048367	-2.3533	-0.001248	-3.2653	-0.0017317	530.3319432049624	79.535	1.2548	79.535	79.16	80.415	0					42	29	2	0	0	0	0.39228	1	9887	9887		66.429	4.3219	1	683350	+		44920	22221	31071	31122	50380	50380					0.12520710053104267
LMLLATCL	8	Unmodified	_LMLLATCL_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.58544921875	2	439.247917	876.481282	-0.13024	-5.7209E-05	2.783	0.0012224	2.6527	0.0011652	439.24922630625764	33.085	0.676	32.884	32.649	33.325	-0.20019					24	16	2	0	0	0	0.027866	1	2334	2334		8.8223	0	1	290250	+		44921	19076	31072	31123	50381	50381					0.038100564101227974
LMLLGTCKI	9	Carbamidomethyl (C),Oxidation (M)	_LM(Oxidation (M))LLGTC(Carbamidomethyl (C))KI_	LMLLGTC(1)KI	LM(1)LLGTCKI	LMLLGTC(77)KI	LM(77)LLGTCKI	0	1	1			REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF	REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7974853515625	2	532.795763	1063.57697	-1.3124	-0.00069924	4.0208	0.0021422	2.7084	0.001443	532.7977112360818	90.736	0.9549	90.581	90.264	91.219	-0.1552					66	22	5	0	0	0	0.29158	1	11146	11146		76.774	9.4469	1	3598100	+		44922	33058	31073	31124	50382	50382	437	906			0.047727845303825234
LMLLGTCKI	9	Carbamidomethyl (C),Oxidation (M)	_LM(Oxidation (M))LLGTC(Carbamidomethyl (C))KI_	LMLLGTC(1)KI	LM(1)LLGTCKI	LMLLGTC(72)KI	LM(72)LLGTCKI	0	1	1			REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF	REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.798095703125	2	532.795763	1063.57697	-1.0695	-0.00056981	3.7006	0.0019717	2.6311	0.0014018	532.7976248853954	90.774	0.95075	90.649	90.249	91.199	-0.12512					71	22	5	0	0	0	0.32811	1	11161	11161		71.877	8.899	1	4607100	+		44923	33058	31073	31124	50383	50383	437	906			0.047727845303825234
LMLLHPPLK	9	Unmodified	_LMLLHPPLK_					0	0	0			REV__ENST00000602462.1_1_7:100845744-100846490:-|nuORF	REV__ENST00000602462.1_1_7:100845744-100846490:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3082275390625	2	531.33063	1060.64671	1.1864	0.00063038	-3.6221	-0.0019245	-2.4356	-0.0012941	531.3283420683895	59.086	0.35888	58.899	58.648	59.007	-0.18705					17	9	2	0	0	0	0.024183	1	6688	6688		60.294	10.269	1	134030	+		44924	35874	31074	31125	50384	50384					0.1188103126128226
LMLLIDKNN	9	Oxidation (M)	_LM(Oxidation (M))LLIDKNN_		LM(1)LLIDKNN		LM(100)LLIDKNN	0	0	1			REV__nc|ENSG00000159842|Q12979-4|ABR;REV__nc|ENSG00000159842|Q12979-3|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.30126953125	2	545.302267	1088.58998	-0.73037	-0.00039827	-0.25125	-0.00013701	-0.98162	-0.00053528	545.3021987952355	63.12	1.2968	63.12	62.729	64.026	0					110	34	4	0	0	0	0.12602	1	7415	7415		104.75	6.1646	1	24837000	+		44925	25277;36831	31075	31126	50385	50385		749			0.049229389141146385
LMLLIDKNN	9	Oxidation (M)	_LM(Oxidation (M))LLIDKNN_		LM(1)LLIDKNN		LM(110)LLIDKNN	0	0	1			REV__nc|ENSG00000159842|Q12979-4|ABR;REV__nc|ENSG00000159842|Q12979-3|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.299072265625	2	545.302267	1088.58998	-0.66641	-0.00036339	-0.25048	-0.00013659	-0.91689	-0.00049998	545.30223970613	63.426	1.5214	63.175	62.683	64.204	-0.25141					112	34	4	0	0	0	0.11092	1	7428	7428		108.09	12.272	1	22862000	+		44926	25277;36831	31075	31126	50386	50386		749			0.049229389141146385
LMLLRLSIT	9	Unmodified	_LMLLRLSIT_					0	0	0		ENST00000441107.5_1_6:150023099-150023129:-|nuORF	ENST00000441107.5_1_6:150023099-150023129:-|nuORF	ENST00000441107.5_1_6:150023099-150023129:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3313598632812	2	530.33337	1058.65219	0.15927	8.4467E-05	-3.1174	-0.0016533	-2.9582	-0.0015688	530.3314353400998	79.371	0.87524	79.221	78.821	79.696	-0.15051					50	20	4	0	0	0	0.16468	1	9466	9466		96.19	0	1	1068300			44927	14354	31076	31127	50387	50387					0.12520710053104267
LMLNRSLSRL	10	Unmodified	_LMLNRSLSRL_					0	0	0		nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.5719909667969	3	401.57278	1201.69651	0.49211	0.00019762	-2.7396	-0.0011002	-2.2475	-0.00090254	401.5715603293036	33.39	1.0448	33.159	32.67	33.714	-0.23107					80	25	5	0	0	0	1.0639	1	2389	2389		37.508	2.0125	1	1803600			44928	2380	31077	31128	50388	50388					0.10373114199296651
LMLPAGHCGH	10	Unmodified	_LMLPAGHCGH_					0	0	0		ENST00000270066.10_1_19:44233122-44233236:-|nuORF	ENST00000270066.10_1_19:44233122-44233236:-|nuORF	ENST00000270066.10_1_19:44233122-44233236:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7799682617188	2	518.246772	1034.47899	-1.3887	-0.00071971	0.56855	0.00029465	-0.82019	-0.00042506	518.2465826441203	51.367	0.1026	51.454	51.375	51.478	0.087009					4	2	2	0	0	0	0.03519	1	5364	5364		26.796	15.285	1	45752			44929	11641	31078	31129	50389	50389					-0.036869792749484986
LMLPAGHCGH	10	Unmodified	_LMLPAGHCGH_					0	0	0		ENST00000270066.10_1_19:44233122-44233236:-|nuORF	ENST00000270066.10_1_19:44233122-44233236:-|nuORF	ENST00000270066.10_1_19:44233122-44233236:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.246772	1034.47899	-0.14814	-7.6775E-05	-2.1808	-0.0011302	-2.329	-0.001207	518.2454091251218	51.101	0.47722	51.101	50.845	51.323	0	-0.17633	-0.00083612	NaN	26.796	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77076			44930	11641	31078	31129							-0.036869792749484986
LMLRKFPV	8	Unmodified	_LMLRKFPV_					0	0	0			REV__ENST00000435645.1_1_10:30984882-30987340:+|nuORF	REV__ENST00000435645.1_1_10:30984882-30987340:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.6337890625	2	502.309698	1002.60484	-0.27888	-0.00014008	2.1123	0.001061	1.8335	0.00092096	502.8135748157741	102.22	0.66238	102.22	101.77	102.44	0					17	14	2	0	0	0	0.027866	1	13077	13077		13.775	0	1	41658	+		44931	32442	31079	31130	50390	50390					0.10364475572771426
LMLRQLSP	8	Unmodified	_LMLRQLSP_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2800598144531	2	479.281137	956.547722	1.2416	0.00059509	-4.286	-0.0020542	-3.0443	-0.0014591	479.2789221522539	58.951	1.1419	58.951	58.495	59.637	0					85	30	4	0	0	0	0.59392	1	6699	6699		76.847	5.5509	1	6852400	+		44932	25742	31080	31131	50391	50391					0.0677100829640267
LMLRQLSP	8	Unmodified	_LMLRQLSP_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2799987792969	2	479.281137	956.547722	0.45286	0.00021705	-3.4178	-0.0016381	-2.965	-0.0014211	479.2793452328716	58.812	1.0979	58.898	58.481	59.579	0.086258					87	29	4	0	0	0	0.39824	2	6597	6587;6597		97.473	18.022	1	6738700	+		44933	25742	31080	31131	50392;50393	50393					0.0677100829640267
LMLRSILCP	9	Unmodified	_LMLRSILCP_					0	0	0			REV__ENSG00000159459|ENST00000290650|UBR1	REV__ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2927856445312	2	523.298473	1044.58239	-1.7492	-0.00091535	-4.2899	-0.0022449	-6.0391	-0.0031603	523.2950570466779	51.874	1.3508	51.605	51.203	52.553	-0.26904					80	35	4	0	0	0	0.096521	1	5345	5345		111.65	21.278	1	7671500	+		44934	25259	31081	31132	50394	50394					0.06188508112859381
LMLSGNLIK	9	Oxidation (M)	_LM(Oxidation (M))LSGNLIK_		LM(1)LSGNLIK		LM(85)LSGNLIK	0	0	1		ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.7933654785156	2	502.794078	1003.5736	-0.079445	-3.9944E-05	-3.7187	-0.0018697	-3.7981	-0.0019097	502.79202657484876	64.19	0.9017	63.997	63.529	64.43	-0.19243					68	22	5	0	0	0	0.23085	2	7280	7280;7290		84.916	19.112	1	1926400			44935	14549	31082	31133	50395;50396	50395		509			0.07195857748024537
LMLSGNLIK	9	Oxidation (M)	_LM(Oxidation (M))LSGNLIK_		LM(1)LSGNLIK		LM(72)LSGNLIK	0	0	1		ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	ENST00000453465.1_1_10:21915067-21915193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.793212890625	2	502.794078	1003.5736	-0.55668	-0.0002799	-3.2741	-0.0016462	-3.8308	-0.0019261	502.7922666964359	64.28	0.70988	64.024	63.716	64.426	-0.25563					52	17	4	0	0	0	0.32811	1	7282	7282		71.877	15.156	1	2282300			44936	14549	31082	31133	50397	50397		509			0.07195857748024537
LMLSWLVPD	9	Unmodified	_LMLSWLVPD_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2616577148438	2	537.288628	1072.5627	-0.9002	-0.00048367	-2.8356	-0.0015235	-3.7358	-0.0020072	537.2867951191139	69.331	0.49542	69.108	68.894	69.39	-0.22246					17	11	2	0	0	0	0.024354	1	8004	8004		38.806	0	1	149740	+		44937	26810;37445	31083	31134	50398	50398					0.02932455373729681
LMLSWLVPD	9	Unmodified	_LMLSWLVPD_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2616577148438	2	537.288628	1072.5627	-0.74819	-0.000402	3.6137	0.0019416	2.8655	0.0015396	537.2906751899302	69.038	0.37494	68.808	68.637	69.012	-0.23048					10	8	2	0	0	0	0.024354	1	8004	8004		38.806	1.647	1	101380	+		44938	26810;37445	31083	31134	50399	50399					0.02932455373729681
LMLTTSPRRA	10	Unmodified	_LMLTTSPRRA_					0	0	0		ENST00000592182.5_1_2:179393207-179400524:+|nuORF;ENST00000588804.5_3_2:179393504-179400524:+|nuORF;ENST00000442329.6_1_2:179396215-179400524:+|nuORF;ENST00000585487.5_1_2:179388144-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.3255004882812	2	573.326608	1144.63866	-0.12319	-7.0627E-05	-1.487	-0.00085253	-1.6102	-0.00092315	573.3255769403254	72.98	1.083	72.703	72.282	73.365	-0.2769					54	25	4	0	0	0	0.66532	1	8548	8548		69.628	10.846	1	1030200			44939	14379	31084	31135	50400	50400					0.0721285227386943
LMLTTSPRRA	10	Unmodified	_LMLTTSPRRA_					0	0	0		ENST00000592182.5_1_2:179393207-179400524:+|nuORF;ENST00000588804.5_3_2:179393504-179400524:+|nuORF;ENST00000442329.6_1_2:179396215-179400524:+|nuORF;ENST00000585487.5_1_2:179388144-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	573.326608	1144.63866	-1.0044	-0.00057583	-1.2118	-0.00069478	-2.2162	-0.0012706	573.3254684062421	72.702	0.87242	72.702	72.454	73.327	0	-0.014128	0.00032169	NaN	69.628	35	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192510			44940	14379	31084	31135							0.0721285227386943
LMLTTSPRRA	10	Unmodified	_LMLTTSPRRA_					0	0	0		ENST00000592182.5_1_2:179393207-179400524:+|nuORF;ENST00000588804.5_3_2:179393504-179400524:+|nuORF;ENST00000442329.6_1_2:179396215-179400524:+|nuORF;ENST00000585487.5_1_2:179388144-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	573.326608	1144.63866	0.27142	0.00015561	-2.4533	-0.0014065	-2.1819	-0.0012509	573.3248325499944	73.138	0.64663	72.867	72.557	73.204	-0.27126	0.15155	-0.0011018	NaN	69.628	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196760			44941	14379	31084	31135							0.0721285227386943
LMLTTSPRRA	10	Unmodified	_LMLTTSPRRA_					0	0	0		ENST00000592182.5_1_2:179393207-179400524:+|nuORF;ENST00000588804.5_3_2:179393504-179400524:+|nuORF;ENST00000442329.6_1_2:179396215-179400524:+|nuORF;ENST00000585487.5_1_2:179388144-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	ENST00000592182.5_1_2:179393207-179400524:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	573.326608	1144.63866	-0.27733	-0.000159	-1.6814	-0.00096401	-1.9588	-0.001123	573.3252262798136	72.819	0.57838	72.828	72.489	73.068	0.0096512	0.11251	-0.00021677	NaN	69.628	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175320			44942	14379	31084	31135							0.0721285227386943
LMLVAARNI	9	Unmodified	_LMLVAARNI_					0	0	0			REV__nc|ENSG00000074603|Q6V1X1-6|DPP8	REV__nc|ENSG00000074603|Q6V1X1-6|DPP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2794494628906	2	500.802237	999.589921	-1.2182	-0.00061009	4.2262	0.0021165	3.008	0.0015064	500.80425549913843	90.957	0.45628	90.957	90.636	91.092	0					16	10	2	0	0	0	0.024487	1	11465	11465		17.365	0	1	107800	+		44943	20527	31085	31136	50401	50401					0.09010983704774844
LMMCFRLLQ	9	Unmodified	_LMMCFRLLQ_					0	0	0		ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2800903320312	2	577.797783	1153.58101	0.77656	0.00044869	-1.8596	-0.0010745	-1.083	-0.00062578	577.7966043399762	51.084	0.68865	50.973	50.638	51.327	-0.11163					23	17	2	0	0	0	0.024517	1	5210	5210		26.796	13.837	1	226230			44944	9751	31086	31137	50402	50402					0.010365507524284112
LMMDIYKY	8	Unmodified	_LMMDIYKY_					0	0	0		ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.32861328125	2	538.761389	1075.50822	-1.5806	-0.00085156	0.027151	1.4628E-05	-1.5534	-0.00083693	538.7614983360697	82.024	0.47093	81.884	81.659	82.13	-0.14014					15	10	2	0	0	0	0.027866	1	9831	9831		20.482	0	1	91320			44945	4859	31087	31138	50403	50403					-0.026508797693395536
LMMGVFDSAE	10	Oxidation (M)	_LM(Oxidation (M))MGVFDSAE_		LM(0.921)M(0.079)GVFDSAE		LM(11)M(-11)GVFDSAE	0	0	1			REV__ENSG00000114120|ENST00000324194|SLC25A36	REV__ENSG00000114120|ENST00000324194|SLC25A36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.3419189453125	2	558.241018	1114.46748	-0.28368	-0.00015836	-0.14046	-7.8412E-05	-0.42414	-0.00023677	558.2408577592299	66.764	0.50008	66.764	66.588	67.088	0					20	11	2	0	0	0	0.03519	1	7960	7960		79.451	29.915	2	520630	+		44946	22106	31088	31139	50404	50404		659			-0.08517265879640945
LMMGVFDSAE	10	Oxidation (M)	_LM(Oxidation (M))MGVFDSAE_		LM(0.953)M(0.047)GVFDSAE		LM(13)M(-13)GVFDSAE	0	0	1			REV__ENSG00000114120|ENST00000324194|SLC25A36	REV__ENSG00000114120|ENST00000324194|SLC25A36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.317626953125	2	558.241018	1114.46748	-0.15437	-8.6174E-05	0.14358	8.015E-05	-0.010791	-6.0238E-06	558.2409397095963	66.811	0.5901	66.835	66.601	67.191	0.023903					31	13	3	0	0	0	0.03519	1	7893	7893		79.451	18.479	2	583380	+		44947	22106	31088	31139	50405	50405		659			-0.08517265879640945
LMMIPPHR	8	Unmodified	_LMMIPPHR_					0	0	0		ENST00000554980.5_1_14:76425532-76432102:-|nuORF;nc|ENSG00000119699|P10600-2|TGFB3;ENSG00000119699|ENST00000238682|TGFB3	ENST00000554980.5_1_14:76425532-76432102:-|nuORF	ENST00000554980.5_1_14:76425532-76432102:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7876281738281	2	497.769883	993.525212	-0.12067	-6.0064E-05	-1.9046	-0.00094804	-2.0252	-0.0010081	497.7688719668748	57.019	0.43507	57.114	56.846	57.281	0.09531					21	11	3	0	0	0	0.027866	1	6271	6271		35.201	0	1	130990			44948	3757	31089	31140	50406	50406					0.02819085627129425
LMMKWHQL	8	Oxidation (M)	_LM(Oxidation (M))MKWHQL_		LM(1)MKWHQL		LM(46)M(-46)KWHQL	0	0	1		ENST00000285093.14_1_18:47318649-47318688:-|nuORF	ENST00000285093.14_1_18:47318649-47318688:-|nuORF	ENST00000285093.14_1_18:47318649-47318688:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.7800903320312	2	551.780447	1101.54634	-0.92569	-0.00051078	-0.73013	-0.00040287	-1.6558	-0.00091365	551.7800964391662	45.349	1.6885	45.2	44.866	46.554	-0.1488					112	48	5	0	0	0	0.37125	1	4400	4400		101.21	8.0161	2	20178000			44949	11748	31090	31141	50407	50407		469			-0.0003694906401960907
LMMPYYQL	8	Unmodified	_LMMPYYQL_					0	0	0		ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	ENSG00000165349|ENST00000374299|SLC7A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.80322265625	2	529.756107	1057.49766	0.41501	0.00021985	3.1402	0.0016636	3.5552	0.0018834	529.7577247414073	64.127	0.17584	64.127	64.062	64.238	0					5	4	2	0	0	0	0.027866	1	7547	7547		44.531	21.008	1	106710			44950	7402	31091	31142	50408	50408					-0.02878862423767714
LMNAVSPLK	9	Unmodified	_LMNAVSPLK_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7786865234375	2	486.78097	971.547388	-0.83054	-0.00040429	-3.5672	-0.0017364	-4.3977	-0.0021407	486.7791155363269	56.454	1.7667	56.552	55.999	57.766	0.097897					120	48	4	0	0	0	0.12602	1	6179	6179		104.75	0.68976	1	18453000			44951	7350	31092	31143	50409	50409					0.060475885765413295
LMNFPNPL	8	Oxidation (M)	_LM(Oxidation (M))NFPNPL_		LM(1)NFPNPL		LM(96)NFPNPL	0	0	1		PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.2431945800781	2	481.244221	960.473888	-1.0224	-0.00049201	3.3482	0.0016113	2.3258	0.0011193	481.2458621142709	60.894	1.5236	60.718	60.322	61.845	-0.1761					85	37	5	0	0	0	0.40853	1	6828	6828		96.048	13.743	1	11352000			44952	19003	31093	31144	50410	50410		598			-0.007929598659302428
LMNGLFAV	8	Unmodified	_LMNGLFAV_					0	0	0			REV__ENSG00000197437|ENST00000642119|OR13G1	REV__ENSG00000197437|ENST00000642119|OR13G1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.5483093261719	2	432.736031	863.45751	0.58721	0.00025411	3.9948	0.0017287	4.582	0.0019828	432.7377044343137	24.434	0.63938	24.513	24.275	24.914	0.078344					23	13	2	0	0	0	0.027866	1	1044	1044		13.775	4.953	1	63726	+		44953	28303	31094	31145	50411	50411					0.020319589679616
LMNGLYYE	8	Unmodified	_LMNGLYYE_					0	0	0			REV__ENSG00000068912|ENST00000185150|ERLEC1	REV__ENSG00000068912|ENST00000185150|ERLEC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2940673828125	2	501.733686	1001.45282	0.45483	0.0002282	-0.25809	-0.00012949	0.19674	9.871E-05	501.7333628771243	78.159	0.6757	77.924	77.624	78.3	-0.23489					34	15	3	0	0	0	0.027866	1	9310	9310		38.806	0	1	358780	+		44954	20391	31095	31146	50412	50412					-0.04784969965464825
LMNIIPSLH	9	Oxidation (M)	_LM(Oxidation (M))NIIPSLH_		LM(1)NIIPSLH		LM(63)NIIPSLH	0	0	1			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.2887573242188	2	527.291702	1052.56885	-0.72339	-0.00038144	-0.60334	-0.00031814	-1.3267	-0.00069958	527.2911177964082	104.14	0.60208	104.14	103.9	104.5	0					39	13	4	0	0	0	0.43973	1	13355	13355		63.306	7.8021	1	792640	+		44955	28454	31096	31147	50413	50413		842			0.044669736052583175
LMNILNKVVT	10	Unmodified	_LMNILNKVVT_					0	0	0		ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	ENSG00000126247|ENST00000246533|CAPNS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2643432617188	2	572.841559	1143.66857	0.28199	0.00016153	-3.263	-0.0018692	-2.981	-0.0017077	572.8395817153506	76.803	0.63497	76.552	76.228	76.863	-0.25162					40	14	4	0	0	0	0.03519	1	9141	9141		25.574	2.1961	1	558030			44956	4189	31097	31148	50414	50414					0.10247791219194369
LMNKLVVVI	9	Unmodified	_LMNKLVVVI_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ENST00000533107.3_1_19:1799652-1806029:-|nuORF;ENST00000531925.5_1_19:1789538-1806275:-|nuORF	nc|ENSG00000130270|O60423-3|ATP8B3;ENST00000531925.5_1_19:1789538-1806275:-|nuORF	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8028564453125	2	514.830463	1027.64637	-0.044337	-2.2826E-05	-0.077411	-3.9853E-05	-0.12175	-6.2679E-05	514.8316670803891	59.904	0.19049	59.656	59.571	59.762	-0.24842					8	4	2	0	0	0	0.024487	1	6630	6630		31.955	0	1	79251			44957	4405;16275	31098	31149	50415	50415					0.1336561154141691
LMNLYVPEI	9	Unmodified	_LMNLYVPEI_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.275634765625	2	546.293911	1090.57327	-0.81783	-0.00044677	-2.8337	-0.0015481	-3.6516	-0.0019948	546.2920497595659	73.061	0.50072	73.07	72.901	73.402	0.0096512					13	12	2	0	0	0	0.023417	1	8810	8810		79.451	31.794	1	94600	+		44958	36956	31099	31150	50416	50416					0.031604380281578415
LMNNIQQLRV	10	Unmodified	_LMNNIQQLRV_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.8587341308594	3	410.232535	1227.67578	-0.24187	-9.9224E-05	-1.4696	-0.00060286	-1.7114	-0.00070209	410.23179383683714	29.128	1.5651	28.978	28.615	30.18	-0.14952					78	36	3	0	0	0	0.03519	1	1902	1902		40.058	4.88	1	604050			44959	5151	31100	31151	50417	50417					0.07104523819612041
LMNNIQQLRV	10	Unmodified	_LMNNIQQLRV_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	410.232535	1227.67578	-0.21644	-8.879E-05	-2.0874	-0.00085633	-2.3039	-0.00094512	410.23124474402414	29.196	1.1482	29.023	28.723	29.872	-0.17258	0.0037371	-0.0012262	NaN	40.058	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632140			44960	5151	31100	31151							0.07104523819612041
LMNVELNNL	9	Unmodified	_LMNVELNNL_					0	0	0			REV__ENST00000433510.2_1_17:46713503-46713704:-|nuORF	REV__ENST00000433510.2_1_17:46713503-46713704:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2777099609375	2	530.278792	1058.54303	-0.59152	-0.00031367	-2.3362	-0.0012389	-2.9278	-0.0015525	530.277414161755	57.739	2.372	57.739	57.148	59.52	0					154	63	4	0	0	0	0.2101	1	6554	6554		87.696	10.922	1	56702000	+		44961	32407	31101	31152	50418	50418					0.016100793629675536
LMNVELNNL	9	Unmodified	_LMNVELNNL_					0	0	0			REV__ENST00000433510.2_1_17:46713503-46713704:-|nuORF	REV__ENST00000433510.2_1_17:46713503-46713704:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2770385742188	2	530.278792	1058.54303	-0.70494	-0.00037381	-2.1293	-0.0011291	-2.8343	-0.001503	530.2775091347208	57.991	2.1849	57.816	57.268	59.453	-0.1749					150	59	4	0	0	0	0.32811	1	6558	6558		71.877	7.6702	1	41030000	+		44962	32407	31101	31152	50419	50419					0.016100793629675536
LMPFPLPP	8	Unmodified	_LMPFPLPP_					0	0	0		ENST00000504485.5_1_6:43172915-43173005:+|nuORF	ENST00000504485.5_1_6:43172915-43173005:+|nuORF	ENST00000504485.5_1_6:43172915-43173005:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.1558532714844	2	456.2566	910.498647	-0.18049	-8.2348E-05	1.1751	0.00053614	0.99459	0.00045379	456.2571647690319	39.896	0.84603	39.665	39.2	40.046	-0.23021					26	21	2	0	0	0	0.027866	1	3403	3403		24.504	15.321	1	170290			44963	15715	31102	31153	50420	50420					0.039817200074367065
LMPHSPQP	8	Unmodified	_LMPHSPQP_					0	0	0			REV__ENST00000376655.1_1_1:11737515-11751604:-|nuORF	REV__ENST00000376655.1_1_1:11737515-11751604:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7146301269531	2	453.728738	905.442923	-0.61518	-0.00027912	-3.6537	-0.0016578	-4.2688	-0.0019369	453.7269254306278	23.778	2.8233	23.717	22.425	25.249	-0.060862					107	64	3	0	0	0	0.027866	1	833	833		37.159	9.2769	1	537980	+		44964	31365	31103	31154	50421	50421					-0.01358113180174314
LMPHSPQP	8	Unmodified	_LMPHSPQP_					0	0	0			REV__ENST00000376655.1_1_1:11737515-11751604:-|nuORF	REV__ENST00000376655.1_1_1:11737515-11751604:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	453.728738	905.442923	-0.13361	-6.0623E-05	-3.8408	-0.0017427	-3.9744	-0.0018033	453.7268102554957	23.398	2.3771	23.474	22.793	25.17	0.076239	-0.15371	0.000101	NaN	37.159	124	53	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492100	+		44965	31365	31103	31154							-0.01358113180174314
LMPKNVYHL	9	Oxidation (M)	_LM(Oxidation (M))PKNVYHL_		LM(1)PKNVYHL		LM(50)PKNVYHL	0	0	1			REV__nc|ENSG00000274150|A8MWK0|FADS2B	REV__nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.80712890625	2	565.804977	1129.5954	-0.78682	-0.00044519	3.4521	0.0019532	2.6653	0.001508	565.8067429670461	28.504	1.3345	28.584	27.759	29.093	0.080811					85	32	4	0	0	0	0.64155	1	1598	1598		50.025	8.5979	1	1675400	+		44966	37201	31104	31155	50422	50422		980			0.03578662496556717
LMPKNVYHL	9	Oxidation (M)	_LM(Oxidation (M))PKNVYHL_					0	0	1			REV__nc|ENSG00000274150|A8MWK0|FADS2B	REV__nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	565.804977	1129.5954	-0.76533	-0.00043303	3.4765	0.001967	2.7111	0.001534	565.8067947601237	28.837	1.1935	28.84	28.01	29.204	0.0031376	0.075763	-0.00028015	NaN	50.025	81	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1298000	+		44967	37201	31104	31155				980			0.03578662496556717
LMPLLKKYK	9	Unmodified	_LMPLLKKYK_					0	0	0		ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1;GXYLT1|p.L311Qfs*11|1|0.09|ENSG00000151233|chr12:42097966-42097966|A/-|frameshift_variant	ENSG00000151233|ENST00000398675|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.330322265625	2	567.359388	1132.70422	0.33643	0.00019088	-3.4708	-0.0019692	-3.1344	-0.0017783	567.3571866872329	93.859	0.72638	93.737	93.453	94.18	-0.12215					34	16	3	0	0	0	0.024487	1	11568	11568		24.203	0	1	211990			44968	6188	31105	31156	50423	50423					0.1431787346684814
LMPPLRIS	8	Unmodified	_LMPPLRIS_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7764587402344	2	463.778231	925.541908	-0.027944	-1.296E-05	-3.2495	-0.001507	-3.2774	-0.00152	463.77649224438414	73.805	2.076	73.533	73.05	75.126	-0.27126					84	51	2	0	0	0	0.99042	1	8981	8981		38.806	1.647	1	4373800			44969	9301	31106	31157	50424	50424					0.07615909784738051
LMPSSLTLV	9	Unmodified	_LMPSSLTLV_					0	0	0		ENST00000327367.8_1_15:67483135-67483486:+|nuORF	ENST00000327367.8_1_15:67483135-67483486:+|nuORF	ENST00000327367.8_1_15:67483135-67483486:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.21697998046875	2	480.775354	959.536154	0.72813	0.00035007	3.1	0.0014904	3.8281	0.0018405	480.77674988577445	37.088	0.81262	36.895	36.537	37.35	-0.193					44	20	4	0	0	0	0.024183	1	2966	2966		40.573	0	1	1253700			44970	12292	31107	31158	50425	50425					0.05476766482388484
LMPSTPSSF	9	Unmodified	_LMPSTPSSF_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2879638671875	2	483.733686	965.452819	-0.70303	-0.00034008	-2.2829	-0.0011043	-2.986	-0.0014444	483.73237732133515	25.311	0.55927	25.311	25.135	25.694	0					30	13	3	0	0	0	0.024	1	1159	1159		37.159	0	1	275680	+		44971	21934	31108	31159	50426	50426					-0.031289699654507785
LMQEIMKM	8	3 Oxidation (M)	_LM(Oxidation (M))QEIM(Oxidation (M))KM(Oxidation (M))_		LM(1)QEIM(1)KM(1)		LM(66)QEIM(66)KM(66)	0	0	3			REV__ENSG00000184459|ENST00000300399|BPIFC	REV__ENSG00000184459|ENST00000300399|BPIFC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2470092773438	2	536.247788	1070.48102	0.3431	0.00018399	-2.2095	-0.0011848	-1.8664	-0.0010008	536.2463994514429	70.461	2.043	70.168	69.714	71.757	-0.29292					98	55	3	0	0	0	0.71833	1	8505	8505		65.803	9.0821	1	4878300	+		44972	27673	31109	31160	50427	50427		821;822;823			-0.05139731372037204
LMQLLLDP	8	Unmodified	_LMQLLLDP_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7718811035156	2	471.770071	941.52559	0.75311	0.00035529	2.8276	0.001334	3.5807	0.0016893	471.7712681907095	39.932	1.5621	39.932	39.627	41.189	0					93	43	3	0	0	0	0.39824	1	3493	3493		97.473	5.2821	1	13354000	+		44973	36953	31110	31161	50428	50428					0.05248783827960324
LMQLRALPD	9	Unmodified	_LMQLRALPD_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1	REV__ENSG00000111676|ENST00000396684|ATN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3291015625	2	528.797152	1055.57975	0.32415	0.00017141	-3.0043	-0.0015887	-2.6802	-0.0014173	528.7951283410206	78.012	0.46347	77.769	77.575	78.038	-0.24232					17	10	2	0	0	0	0.024436	1	9277	9277		30.504	0	1	72145	+		44974	21937	31111	31162	50429	50429					0.05418375979525081
LMQLTTQN	8	Unmodified	_LMQLTTQN_					0	0	0			REV__ENSG00000135914|ENST00000258400|HTR2B	REV__ENSG00000135914|ENST00000258400|HTR2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7668151855469	2	474.744585	947.474617	0.4263	0.00020238	-0.38828	-0.00018434	0.038017	1.8048E-05	474.7443971855139	54.766	0.51972	54.616	54.409	54.929	-0.15036					26	14	2	0	0	0	0.027866	1	6021	6021		30.504	0	1	288460	+		44975	23595	31112	31163	50430	50430					-0.0012216521688515058
LMQYFEAN	8	Oxidation (M)	_LM(Oxidation (M))QYFEAN_		LM(1)QYFEAN		LM(71)QYFEAN	0	0	1			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|258|3|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|258|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2282104492188	2	516.228768	1030.44298	-0.28648	-0.00014789	0.5153	0.00026601	0.22881	0.00011812	516.2289456493144	61.969	0.90803	61.755	61.375	62.283	-0.21375					65	22	4	0	0	0	0.6536	1	6986	6986		71.296	19.96	1	6177500	+		44976	36293	31113	31164	50431	50431		961			-0.07102157970848566
LMQYPALLW	9	Unmodified	_LMQYPALLW_					0	0	0		ENST00000379484.9_1_X:21900582-21900627:+|nuORF	ENST00000379484.9_1_X:21900582-21900627:+|nuORF	ENST00000379484.9_1_X:21900582-21900627:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8299560546875	2	567.804445	1133.59434	-0.21953	-0.00012465	-2.527	-0.0014348	-2.7465	-0.0015595	568.3032534928581	65.563	0.74231	65.321	64.923	65.665	-0.24145					26	17	2	0	0	0	0.024412	1	7450	7450		40.573	0	1	198800			44977	13267	31114	31165	50432	50432					0.03288448127659649
LMRACWKW	8	Unmodified	_LMRACWKW_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-8|ABL2	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2901000976562	2	547.275332	1092.53611	0.36432	0.00019938	-4.2697	-0.0023367	-3.9054	-0.0021373	547.273040314415	96.531	1.1222	96.532	96.114	97.236	0.00086212					30	25	2	0	0	0	0.027866	1	12325	12325		26.796	2.2769	1	116500			44978	12	31115	31166	50433	50433					-0.006455119986185309
LMRCTPHYI	9	Unmodified	_LMRCTPHYI_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.81103515625	2	567.283354	1132.55216	-0.74431	-0.00042224	2.0037	0.0011366	1.2593	0.00071441	567.2841298278285	69.147	0.21659	69.147	69.056	69.273	0					6	5	2	0	0	0	0.022484	1	8339	8339		94.006	35.224	1	39596			44979	5555	31116	31167	50434	50434					-0.008818505523549902
LMRDRRDKRRK	11	Unmodified	_LMRDRRDKRRK_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.96868896484375	3	510.635437	1528.88448	-0.35391	-0.00018072	-1.4807	-0.00075608	-1.8346	-0.0009368	510.63447806200884	103.19	1.539	103.06	102.45	103.99	-0.12783					79	36	3	0	0	0	1.1077	1	12905	12905		9.2118	0	1	331380	+		44980	28466	31117	31168	50435	50435					0.14119365176384235
LMRELKVA	8	Unmodified	_LMRELKVA_					0	0	0			REV__ENSG00000177156|ENST00000319006|TALDO1	REV__ENSG00000177156|ENST00000319006|TALDO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2874450683594	2	480.288963	958.563372	-0.20623	-9.9049E-05	-3.4334	-0.001649	-3.6396	-0.0017481	480.28724246529	66.025	1.0632	65.774	65.353	66.416	-0.25112					79	26	4	0	0	0	0.44658	1	7539	7539		90.777	3.0224	1	6789200	+		44981	27086	31118	31169	50436	50436					0.08243294813428292
LMRIAVHM	8	Unmodified	_LMRIAVHM_					0	0	0			REV__ENST00000503278.1_1_4:6825914-6826001:+|nuORF	REV__ENST00000503278.1_1_4:6825914-6826001:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.78131103515625	2	485.769883	969.525212	0.093284	4.5314E-05	-4.214	-0.002047	-4.1207	-0.0020017	485.7676343575345	80.843	0.53046	80.697	80.451	80.981	-0.146					19	12	2	0	0	0	0.027866	1	9709	9709		54.765	3.572	1	74021	+		44982	33952	31119	31170	50437	50437					0.039230856271274206
LMRIPIQT	8	Unmodified	_LMRIPIQT_					0	0	0		ENST00000260276.7_1_11:111750228-111753254:+|nuORF	ENST00000260276.7_1_11:111750228-111753254:+|nuORF	ENST00000260276.7_1_11:111750228-111753254:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3126220703125	2	486.288963	970.563372	-1.1834	-0.00057546	0.94257	0.00045836	-0.24079	-0.00011709	486.289551164288	44.076	0.82984	44.076	43.621	44.451	0					40	23	3	0	0	0	0.027866	1	4215	4215		57.811	13.694	1	458600			44983	11446	31120	31171	50438	50438					0.07691294813446348
LMRKLAVTQ	9	Unmodified	_LMRKLAVTQ_					0	0	0			REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	REV__SCFD1|p.F201Lfs*9|1|0.41|ENSG00000092108|chr14:30643390-30643390|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.28564453125	2	530.320794	1058.62703	-0.00045854	-2.4317E-07	-0.5597	-0.00029682	-0.56016	-0.00029706	530.3198269302562	80.562	0.78404	80.324	79.747	80.531	-0.23784					31	18	3	0	0	0	0.024477	1	9569	9569		14.865	0	1	270620	+		44984	20926	31121	31172	50439	50439					0.10006655250526819
LMRKNRAD	8	Unmodified	_LMRKNRAD_					0	0	0		ENSG00000266472|ENST00000614145|MRPS21	ENSG00000266472|ENST00000614145|MRPS21	ENSG00000266472|ENST00000614145|MRPS21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.27630615234375	2	502.276918	1002.53928	-0.92848	-0.00046636	0.26719	0.0001342	-0.6613	-0.00033215	502.27662415833487	64.937	1.0471	64.734	64.301	65.348	-0.20254					71	25	4	0	0	0	0.89627	1	7399	7399		51.335	0	1	1954100			44985	10976	31122	31173	50440	50440					0.038114543797632905
LMRKPIPQ	8	Unmodified	_LMRKPIPQ_					0	0	0			REV__ENSG00000137547|ENST00000260102|MRPL15	REV__ENSG00000137547|ENST00000260102|MRPL15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.75048828125	2	491.796955	981.579357	-0.38583	-0.00018975	-0.73067	-0.00035934	-1.1165	-0.0005491	491.7958383914452	46.158	0.76621	46.062	45.529	46.295	-0.096649					42	20	3	0	0	0	0.027866	1	4382	4382		12.959	4.7279	1	518810	+		44986	23767	31123	31174	50441	50441					0.08783001050335315
LMRLLLRF	8	Unmodified	_LMRLLLRF_					0	0	0			REV__ENSG00000113645|ENST00000265293|WWC1	REV__ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2900390625	2	531.336247	1060.65794	-0.88443	-0.00046993	1.8177	0.00096583	0.9333	0.0004959	531.3370756920934	55.285	0.13421	55.139	55.022	55.156	-0.14609					5	3	2	0	0	0	0.027866	1	5908	5908		35.201	5.3592	1	70362	+		44987	22080	31124	31175	50442	50442					0.13003853355439787
LMRMTAILQ	9	Unmodified	_LMRMTAILQ_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8016357421875	2	538.80138	1075.58821	0.12626	6.8027E-05	-3.2376	-0.0017444	-3.1113	-0.0016764	538.7994419479146	87.772	0.72416	87.791	87.557	88.281	0.018555					30	17	2	0	0	0	0.17822	1	11011	11011		93.195	10.89	1	1953100			44988	6183	31125	31176	50443	50443					0.053436066245012626
LMRMYNSD	8	Unmodified	_LMRMYNSD_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2877197265625	2	515.228245	1028.44194	-0.12647	-6.5163E-05	-1.4802	-0.00076263	-1.6067	-0.00082779	515.2273722548813	34.347	0.85878	34.123	33.721	34.58	-0.22412					50	21	3	0	0	0	0.027866	1	2543	2543		47.916	17.412	1	1318000	+		44989	36819	31126	31177	50444	50444					-0.07114695611380739
LMRNLFIG	8	Unmodified	_LMRNLFIG_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.23486328125	2	482.275855	962.537157	-0.73824	-0.00035604	2.1443	0.0010341	1.4061	0.00067811	482.2767338850826	34.124	0.46817	33.949	33.742	34.21	-0.17557					16	11	2	0	0	0	0.027866	1	2472	2472		8.8223	0	1	85841			44990	2250	31127	31178	50445	50445					0.054390256419537764
LMRNVKMKV	9	Unmodified	_LMRNVKMKV_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8322143554688	2	559.830472	1117.64639	-0.14007	-7.8418E-05	2.8005	0.0015678	2.6604	0.0014894	559.831823225614	78.905	1.7462	78.924	78.609	80.355	0.018677					107	41	5	0	0	0	0.22754	1	9721	9721		85.359	14.064	1	3344200	+		44991	37579;20657	31128	31179	50446	50446					0.09227288269789824
LMRQGFEI	8	Unmodified	_LMRQGFEI_					0	0	0			REV__ENSG00000132471|ENST00000254806|WBP2	REV__ENSG00000132471|ENST00000254806|WBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2621765136719	2	497.262945	992.511337	-0.97259	-0.00048363	-0.46188	-0.00022968	-1.4345	-0.00071331	497.262694898755	44.149	1.7048	44.044	43.544	45.249	-0.10468					128	45	5	0	0	0	0.74904	1	4114	4114		63.306	0	1	26568000	+		44992	23284	31129	31180	50447	50447					0.014781313996763856
LMRQGFEI	8	Unmodified	_LMRQGFEI_					0	0	0			REV__ENSG00000132471|ENST00000254806|WBP2	REV__ENSG00000132471|ENST00000254806|WBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.26318359375	2	497.262945	992.511337	-0.92701	-0.00046097	-0.45996	-0.00022872	-1.387	-0.00068969	497.26266559054324	44.306	1.5544	44.062	43.711	45.266	-0.2444					122	41	5	0	0	0	0.80469	1	4144	4144		58.782	0.97068	1	25420000	+		44993	23284	31129	31180	50448	50448					0.014781313996763856
LMRQNKST	8	Unmodified	_LMRQNKST_					0	0	0		ENST00000448223.6_1_2:17899438-17902280:-|nuORF	ENST00000448223.6_1_2:17899438-17902280:-|nuORF	ENST00000448223.6_1_2:17899438-17902280:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2618103027344	2	489.263476	976.512399	0.10189	4.9851E-05	3.0088	0.0014721	3.1107	0.0015219	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.59392	1	5982	5982		76.847	28.931	1	81379000			44994	14479	31130	31181	50449	50449					0.02320345768578136
LMRSTLVKP	9	Unmodified	_LMRSTLVKP_					0	0	0			REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2927856445312	2	522.815344	1043.61614	-1.3454	-0.00070341	-4.3324	-0.002265	-5.6778	-0.0029685	522.8133660572142	51.799	0.40959	51.53	51.281	51.691	-0.26903					17	10	2	0	0	0	0.024319	1	5345	5345		66.429	11.653	1	149710	+		44995	27590	31131	31182	50450	50450					0.0960725287625337
LMRSTLVKP	9	Unmodified	_LMRSTLVKP_					0	0	0			REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	REV__ZNF438|p.Q262Hfs*4|1|0.03|ENSG00000183621|chr10:30849619-30849620|-/AACA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2979125976562	2	522.815344	1043.61614	-1.4783	-0.00077287	-0.50097	-0.00026191	-1.9793	-0.0010348	522.8150857259676	52.328	0.51336	52.059	51.725	52.238	-0.26903					27	13	3	0	0	0	0.024344	1	5370	5370		64.207	18.255	1	951560	+		44996	27590	31131	31182	50451	50451					0.0960725287625337
LMRTILDKL	9	Unmodified	_LMRTILDKL_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.834716796875	2	551.836277	1101.658	-0.54571	-0.00030114	-3.2566	-0.0017971	-3.8023	-0.0020983	551.8343942682029	66.337	0.53954	66.055	65.711	66.251	-0.28149					45	13	4	0	0	0	0.40693	1	7845	7845		65.465	3.358	1	3042800	+		44997	21883	31132	31183	50452	50452					0.11123808564775572
LMRTILDKL	9	Unmodified	_LMRTILDKL_					0	0	0			REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	REV__nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.834716796875	2	551.836277	1101.658	-0.39334	-0.00021706	-3.5597	-0.0019644	-3.9531	-0.0021814	551.8342208923393	66.036	0.55816	66.066	65.737	66.296	0.030106					41	14	4	0	0	0	0.22902	1	7773	7773		85.161	5.7098	1	3539100	+		44998	21883	31132	31183	50453	50453					0.11123808564775572
LMSFIGNRNK	10	Unmodified	_LMSFIGNRNK_					0	0	0		ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	590.2636108398438	2	590.318783	1178.62301	-0.61807	-0.00036486	-2.4233	-0.0014305	-3.0414	-0.0017954	590.3171333414516	56.302	0.35427	56.086	55.881	56.236	-0.21607					13	8	2	0	0	0	0.03519	1	6091	6091		19.997	0	1	155480			44999	9682	31133	31184	50454	50454					0.04084565756807024
LMSFIGNRNK	10	Unmodified	_LMSFIGNRNK_					0	0	0		ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	590.318783	1178.62301	-0.99924	-0.00058987	-3.1789	-0.0018766	-4.1781	-0.0024664	590.317102277265	56.197	0.32096	56.04	55.894	56.215	-0.15656	-0.023096	-0.00048337	NaN	26.693	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141660			45000	9682	31133	31184							0.04084565756807024
LMSISNNSL	9	Oxidation (M)	_LM(Oxidation (M))SISNNSL_		LM(1)SISNNSL		LM(93)SISNNSL	0	0	1			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.74542236328125	2	497.747324	993.480096	0.26208	0.00013045	-4.0891	-0.0020353	-3.827	-0.0019049	497.7452669093134	74.893	1.2551	74.893	74.551	75.806	0					78	32	4	0	0	0	0.17822	1	9212	9212		93.195	8.0346	1	13309000	+		45001	27660	31134	31185	50455	50455		820			-0.016904864250705032
LMSKRQTV	8	Oxidation (M)	_LM(Oxidation (M))SKRQTV_		LM(1)SKRQTV		LM(58)SKRQTV	0	0	1		ENSG00000122733|ENST00000242315|PHF24;ENST00000476115.2_1_9:34971295-34972428:+|nuORF	ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7716979980469	2	489.773677	977.5328	-0.10626	-5.2044E-05	-3.9665	-0.0019427	-4.0727	-0.0019947	489.7718697157063	42.781	0.95881	42.807	42.152	43.111	0.026012					82	26	4	0	0	0	0.81662	1	3910	3910		57.811	6.4758	1	11732000			45002	3939	31135	31186	50456	50456		154			0.04313516428408093
LMSREKEIN	9	Unmodified	_LMSREKEIN_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2974853515625	2	560.294973	1118.57539	0.13034	7.3029E-05	0.75214	0.00042142	0.88249	0.00049445	560.2950573449083	72.462	0.69682	72.462	72.17	72.867	0					55	16	5	0	0	0	0.54416	1	8813	8813		56.434	1.6575	1	1914200	+		45003	28084	31136	31187	50457	50457					0.020848667659720377
LMSRIIML	8	2 Oxidation (M)	_LM(Oxidation (M))SRIIM(Oxidation (M))L_		LM(1)SRIIM(1)L		LM(83)SRIIM(83)L	0	0	2			REV__ENST00000399921.5_1_21:30671872-30693608:+|nuORF	REV__ENST00000399921.5_1_21:30671872-30693608:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7845458984375	2	504.782656	1007.55076	-0.081644	-4.1212E-05	2.6487	0.001337	2.5671	0.0012958	504.7839530636181	98.088	1.3622	98.088	97.683	99.045	0					65	31	3	0	0	0	0.52467	1	12520	12520		83.287	9.3125	1	1114600	+		45004	29919	31137	31188	50458	50458		862;863			0.04728515358897312
LMSRIIML	8	2 Oxidation (M)	_LM(Oxidation (M))SRIIM(Oxidation (M))L_		LM(1)SRIIM(1)L		LM(71)SRIIM(71)L	0	0	2			REV__ENST00000399921.5_1_21:30671872-30693608:+|nuORF	REV__ENST00000399921.5_1_21:30671872-30693608:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7841796875	2	504.782656	1007.55076	0.8002	0.00040393	1.423	0.00071832	2.2232	0.0011222	504.7832262567277	97.974	1.7021	97.838	97.195	98.897	-0.13625					72	39	3	0	0	0	0.65272	1	12101	12101		71.378	8.0716	1	1007400	+		45005	29919	31137	31188	50459	50459		862;863			0.04728515358897312
LMSRLIETT	9	Unmodified	_LMSRLIETT_					0	0	0			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.2947387695312	2	532.294442	1062.57433	-0.3729	-0.00019849	0.81513	0.00043389	0.44223	0.0002354	532.2946136772903	104.12	0.52959	104.12	103.91	104.44	0.0031357					19	12	2	0	0	0	0.62163	1	13337	13337		51.335	1.8939	1	103060	+		45006	28596	31138	31189	50460	50460					0.04554652397064274
LMSRLSPD	8	Unmodified	_LMSRLSPD_					0	0	0		ENSG00000267710|ENST00000649256|EDDM13	ENSG00000267710|ENST00000649256|EDDM13	ENSG00000267710|ENST00000649256|EDDM13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	459.739302	917.464052	-0.32665	-0.00015018	1.4541	0.0006685	1.1274	0.00051833	459.73784064113175	26.738	0.207	26.715	26.569	26.776	-0.023088					5	4	2	0	0	0	0.027866	1	1367	1367		40.573	17.53	1	25050			45007	10985	31139	31190	50461	50461					0.0020185212869137104
LMSRPGAAAL	10	Unmodified	_LMSRPGAAAL_					0	0	0			REV__ENST00000485807.1_1_1:227921248-227921521:-|nuORF	REV__ENST00000485807.1_1_1:227921248-227921521:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.77642822265625	2	493.776219	985.537886	0.4612	0.00022773	-0.31952	-0.00015777	0.14168	6.9958E-05	493.7758275822837	32.577	0.79189	32.385	32.029	32.821	-0.19261					33	18	2	0	0	0	0.62431	1	2249	2249		74.255	7.8258	1	1614400	+		45008	33570	31140	31191	50462	50462					0.0445382029100756
LMSRSQPKV	9	Unmodified	_LMSRSQPKV_					0	0	0		nc|ENSG00000055208|Q9NYJ8-2|TAB2;ENSG00000055208|ENST00000637181|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.28955078125	2	523.294776	1044.575	-0.0068924	-3.6068E-06	1.6529	0.00086496	1.646	0.00086136	523.2944380769846	51.642	1.3975	51.523	51.082	52.48	-0.11875					88	36	4	0	0	0	0.20967	1	5303	5303		87.754	23.547	1	6381100			45009	1186	31141	31192	50463	50463					0.05449491836770903
LMSRSQPKV	9	Unmodified	_LMSRSQPKV_					0	0	0		nc|ENSG00000055208|Q9NYJ8-2|TAB2;ENSG00000055208|ENST00000637181|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2892456054688	2	523.294776	1044.575	-1.7492	-0.00091535	2.7745	0.0014519	1.0253	0.00053652	523.2950570466779	51.874	1.3508	51.605	51.203	52.553	-0.26904					80	35	4	0	0	0	0.17822	1	5323	5323		93.195	5.4412	1	7671500			45010	1186	31141	31192	50464	50464					0.05449491836770903
LMSSDKVN	8	Unmodified	_LMSSDKVN_					0	0	0			REV__ENSG00000198822|ENST00000361669|GRM3	REV__ENSG00000198822|ENST00000361669|GRM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.24005126953125	2	447.223485	892.432418	-0.028472	-1.2733E-05	3.8379	0.0017164	3.8095	0.0017037	447.22509894714364	54.493	0.16212	54.247	54.103	54.265	-0.2453					7	4	2	0	0	0	0.027866	1	5781	5781		35.618	6.4687	1	95128	+		45011	28488	31142	31193	50465	50465					-0.018101406252640118
LMSVAYRSF	9	Oxidation (M)	_LM(Oxidation (M))SVAYRSF_		LM(1)SVAYRSF		LM(48)SVAYRSF	0	0	1			REV__ENST00000460636.2_1_9:102866821-102894208:+|nuORF	REV__ENST00000460636.2_1_9:102866821-102894208:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.27587890625	2	545.273509	1088.53247	-0.30268	-0.00016504	1.6612	0.00090583	1.3586	0.00074079	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	0.67308	1	9520	9520		47.916	10.756	1	57394000	+		45012	32853	31143	31194	50466	50466		901			-0.008259032914565978
LMSVHMADN	9	Unmodified	_LMSVHMADN_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3022766113281	2	509.228245	1016.44194	-0.51547	-0.00026249	0.88963	0.00045302	0.37415	0.00019053	509.7300674253365	57.011	0.40318	57.011	56.745	57.148	0					15	11	2	0	0	0	0.024447	1	6353	6353		40.778	0	1	113280	+		45013	25290	31144	31195	50467	50467					-0.06562695611387426
LMSVIKPKT	9	Unmodified	_LMSVIKPKT_					0	0	0		ENST00000267176.8_1_12:123812498-123812567:-|nuORF	ENST00000267176.8_1_12:123812498-123812567:-|nuORF	ENST00000267176.8_1_12:123812498-123812567:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.28192138671875	2	508.81227	1015.60999	-0.48288	-0.0002457	2.2734	0.0011567	1.7905	0.00091105	508.81366709620715	23.403	0.13018	23.223	23.112	23.242	-0.17989					4	2	2	0	0	0	0.024506	1	903	903		23.042	9.2672	1	55512			45014	11615	31145	31196	50468	50468					0.10280734644720724
LMSYTTNAF	9	Unmodified	_LMSYTTNAF_					0	0	0		RAC2|p.I21M|1|0.19|ENSG00000128340|chr22:37241631-37241631|G/C|missense_variant	RAC2|p.I21M|1|0.19|ENSG00000128340|chr22:37241631-37241631|G/C|missense_variant	RAC2|p.I21M|1|0.19|ENSG00000128340|chr22:37241631-37241631|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2633056640625	2	524.244418	1046.47428	-0.0035025	-1.8362E-06	1.1111	0.00058247	1.1076	0.00058064	524.2458141187278	54.332	0.18793	54.087	54.01	54.198	-0.2453					6	5	2	0	0	0	0.024381	1	5765	5765		45.952	6.6991	1	61552			45015	19022	31146	31197	50469	50469					-0.047095849367678966
LMTCSLDLD	9	Carbamidomethyl (C)	_LMTC(Carbamidomethyl (C))SLDLD_	LMTC(1)SLDLD		LMTC(77)SLDLD		0	1	0		ENSG00000185504|ENST00000327787|FAAP100;nc|ENSG00000185504|Q0VG06-3|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	ENSG00000185504|ENST00000327787|FAAP100	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7869873046875	2	534.241018	1066.46748	0.38587	0.00020615	-4.2365	-0.0022633	-3.8506	-0.0020572	534.239129228536	78.292	0.78111	78.1	77.683	78.464	-0.1921					25	18	2	0	0	0	0.023355	1	9637	9637		76.847	30.895	1	106420			45016	9446	31147	31198	50470	50470	123				-0.06309265879622217
LMTILPLSN	9	Unmodified	_LMTILPLSN_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903137207031	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.62163	1	10513	10513		51.335	12.083	1	10074000	+		45017	22001	31148	31199	50471	50471					0.062444553737236674
LMTLGQQDVS	10	Unmodified	_LMTLGQQDVS_					0	0	0		AK3-RCL1|1|fusion;ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1	AK3-RCL1|1|fusion	AK3-RCL1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.271728515625	2	546.273706	1090.53286	-0.41588	-0.00022718	-2.6235	-0.0014331	-3.0394	-0.0016603	546.2721448783983	64.065	0.83146	63.837	63.549	64.38	-0.22773					52	20	4	0	0	0	0.70466	1	7277	7277		66.962	1.4965	1	1030600			45018	54	31149	31200	50472	50472					-0.008785283622728457
LMTSARVLDL	10	Unmodified	_LMTSARVLDL_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8146362304688	2	559.815541	1117.61653	-0.85269	-0.00047735	0.80728	0.00045193	-0.045414	-2.5423E-05	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.61732	1	10106	10106		75.043	10.836	1	10426000	+		45019	23756	31150	31201	50473	50473					0.06242627805431766
LMTVVAYNI	9	Unmodified	_LMTVVAYNI_					0	0	0		ENST00000524307.5_1_8:124089445-124141439:+|nuORF;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2799682617188	2	512.280803	1022.54705	1.4984	0.00076759	-2.2377	-0.0011463	-0.73929	-0.00037872	512.2785672852283	19.465	0.59472	19.232	18.878	19.473	-0.23345					30	11	4	0	0	0	0.72875	1	408	408		44.117	5.3107	1	98679			45020	6548	31151	31202	50474	50474					0.03668168856677312
LMVALSSCTM	10	Oxidation (M)	_LM(Oxidation (M))VALSSCTM_		LM(1)VALSSCTM		LM(56)VALSSCTM(-56)	0	0	1		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2455444335938	2	536.247788	1070.48102	-0.25522	-0.00013686	-1.68	-0.00090089	-1.9352	-0.0010377	536.2468431595214	70.382	0.62849	70.167	69.855	70.484	-0.21425					30	17	2	0	0	0	0.87795	2	8179	8179;8189		55.504	14.932	2	4620200			45021	6750	31152	31203	50475;50476	50475		281			-0.051397313720599414
LMVATLSIF	9	Unmodified	_LMVATLSIF_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7847595214844	2	497.785721	993.55689	-0.54031	-0.00026896	4.1683	0.0020749	3.628	0.001806	497.7876822515526	60.7	0.88899	60.7	60.366	61.255	0					55	23	4	0	0	0	0.64155	1	6982	6982		50.025	5.9077	1	3625800	+		45022	28484	31153	31204	50477	50477					0.05985356862072422
LMVFPKPVTA	10	Oxidation (M)	_LM(Oxidation (M))VFPKPVTA_		LM(1)VFPKPVTA		LM(57)VFPKPVTA	0	0	1		ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8157348632812	2	559.817553	1117.62055	0.27362	0.00015318	-3.9538	-0.0022134	-3.6801	-0.0020602	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.85955	1	9865	9865		56.721	7.2795	1	35108000			45023	1407	31154	31205	50478	50478		45			0.06644717299172953
LMVGLRPVQ	9	Unmodified	_LMVGLRPVQ_					0	0	0			REV__ENSG00000105655|ENST00000338128|ISYNA1	REV__ENSG00000105655|ENST00000338128|ISYNA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2662048339844	2	506.802237	1011.58992	-0.29248	-0.00014823	-3.9663	-0.0020101	-4.2588	-0.0021584	506.8004764382312	53.382	0.76488	53.192	52.83	53.595	-0.19022					55	20	4	0	0	0	0.024436	1	5536	5536		38.806	27.295	1	1601500	+		45024	21550	31155	31206	50479	50479					0.08458983704770162
LMVIDPMVQ	9	Unmodified	_LMVIDPMVQ_					0	0	0			REV__nc|ENSG00000157540|Q13627-4|DYRK1A	REV__nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2888793945312	2	523.274664	1044.53477	0.12165	6.3659E-05	2.7392	0.0014334	2.8609	0.001497	523.7784982083695	51.702	0.36214	51.583	51.357	51.719	-0.11875					13	9	2	0	0	0	0.021088	1	5294	5294		102.77	12.404	1	109420	+		45025	36814	31156	31207	50480	50480					0.01428809121989616
LMVIMVKAM	9	2 Oxidation (M)	_LM(Oxidation (M))VIM(Oxidation (M))VKAM_		LM(1)VIM(1)VKAM		LM(59)VIM(40)VKAM(-40)	0	0	2			REV__ENSG00000152266|ENST00000282091|PTH	REV__ENSG00000152266|ENST00000282091|PTH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2913818359375	2	534.286717	1066.55888	0.51422	0.00027474	1.2433	0.00066427	1.7575	0.00093901	534.288231390643	107.43	0.89018	107.43	106.6	107.49	0					31	26	2	0	0	0	0.4855	1	13796	13796		60.294	22.482	3	169300	+		45026	24830	31157	31208	50481	50481		735;736			0.028263262840255265
LMVIMVKAM	9	2 Oxidation (M)	_LM(Oxidation (M))VIM(Oxidation (M))VKAM_					0	0	2			REV__ENSG00000152266|ENST00000282091|PTH	REV__ENSG00000152266|ENST00000282091|PTH	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	534.286717	1066.55888	0.51422	0.00027474	1.2433	0.00066427	1.7575	0.00093901	534.288231390643	107.43	0.89018	107.43	106.6	107.49	0	0.10868	0.00056509	NaN	60.294	31	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169300	+		45027	24830	31157	31208				735;736			0.028263262840255265
LMVIMVKAM	9	2 Oxidation (M)	_LM(Oxidation (M))VIM(Oxidation (M))VKAM_					0	0	2			REV__ENSG00000152266|ENST00000282091|PTH	REV__ENSG00000152266|ENST00000282091|PTH	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	534.286717	1066.55888	-0.28454	-0.00015203	3.5319	0.001887	3.2474	0.001735	534.2896214958064	107.36	0.76871	107.36	106.67	107.44	-0.003479	0.036042	0.0030106	NaN	60.294	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162560	+		45028	24830	31157	31208				735;736			0.028263262840255265
LMVIMVKAM	9	2 Oxidation (M)	_LM(Oxidation (M))VIM(Oxidation (M))VKAM_					0	0	2			REV__ENSG00000152266|ENST00000282091|PTH	REV__ENSG00000152266|ENST00000282091|PTH	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	534.286717	1066.55888	-0.41019	-0.00021916	2.4772	0.0013235	2.067	0.0011044	534.2885772426994	107.45	0.68676	107.45	106.78	107.47	0.0018311	0.1241	0.0018836	NaN	60.294	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178810	+		45029	24830	31157	31208				735;736			0.028263262840255265
LMVIMVKAM	9	2 Oxidation (M)	_LM(Oxidation (M))VIM(Oxidation (M))VKAM_					0	0	2			REV__ENSG00000152266|ENST00000282091|PTH	REV__ENSG00000152266|ENST00000282091|PTH	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.286717	1066.55888	-0.24729	-0.00013212	-2.2206	-0.0011864	-2.4679	-0.0013186	534.2857300605039	107.25	0.51506	107.12	106.81	107.32	-0.12381	-0.19849	-0.0031364	NaN	60.294	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111450	+		45030	24830	31157	31208				735;736			0.028263262840255265
LMVPFLRR	8	Unmodified	_LMVPFLRR_					0	0	0		ENST00000182527.3_1_6:52363993-52364077:-|nuORF	ENST00000182527.3_1_6:52363993-52364077:-|nuORF	ENST00000182527.3_1_6:52363993-52364077:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7733154296875	2	516.312772	1030.61099	-0.46032	-0.00023767	-0.25016	-0.00012916	-0.71048	-0.00036683	516.8141413984033	67.119	0.52422	66.837	66.63	67.154	-0.28148					17	12	2	0	0	0	0.027866	1	7940	7940		7.6903	0	1	128920			45031	11123	31158	31209	50482	50482					0.09690993804292702
LMVPVVDLT	9	Unmodified	_LMVPVVDLT_					0	0	0			REV__ENST00000506847.5_1_5:122165335-122165428:+|nuORF	REV__ENST00000506847.5_1_5:122165335-122165428:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7831726074219	2	493.783179	985.551804	1.7986	0.00088813	-1.303	-0.00064339	0.49564	0.00024474	493.7824586337441	82.766	1.0269	82.656	82.168	83.195	-0.11006					52	23	4	0	0	0	0.78069	1	10309	10309		40.573	0	1	823050	+		45032	34037	31159	31210	50483	50483					0.05845052999438849
LMVTIGSLIN	10	Unmodified	_LMVTIGSLIN_					0	0	0			REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF	REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2779541015625	2	530.807185	1059.59982	-0.48449	-0.00025717	0.6324	0.00033568	0.14791	7.8513E-05	530.8073081665839	58.01	0.43214	58.01	57.796	58.228	0					21	11	3	0	0	0	0.03519	1	6529	6529		51.193	5.2204	1	812980	+		45033	33805	31160	31211	50484	50484					0.07240126919509748
LMVYYVSP	8	Unmodified	_LMVYYVSP_					0	0	0			REV__ENSG00000152315|ENST00000282146|KCNK13	REV__ENSG00000152315|ENST00000282146|KCNK13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.9289245605469	2	486.248972	970.48339	-0.20611	-0.00010022	3.7674	0.0018319	3.5613	0.0017317	486.250947081313	45.391	0.42689	45.179	45.022	45.449	-0.21109					20	12	2	0	0	0	0.027866	1	4283	4283		39.021	9.8719	1	361500	+		45034	24833	31161	31212	50485	50485					-0.0030319158041720584
LMWEGPNQ	8	Unmodified	_LMWEGPNQ_					0	0	0			REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF	REV__ENST00000489736.5_1_3:148904295-148925363:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.23040771484375	2	487.723652	973.432752	-1.2553	-0.00061223	-3.1289	-0.001526	-4.3842	-0.0021383	487.7219117094853	30.077	2.1362	30.077	29.333	31.469	0					82	51	2	0	0	0	0.027866	1	2083	2083		42.474	18.272	1	167990	+		45035	20126	31162	31213	50486	50486					-0.05502720905406022
LMYDGTKEV	9	Unmodified	_LMYDGTKEV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2577514648438	2	528.257525	1054.5005	-1.5119	-0.00079866	1.1453	0.00060501	-0.3666	-0.00019366	528.2579593183157	44.572	1.2911	44.572	43.987	45.278	0					75	37	4	0	0	0	0.12914	1	4265	4265		104.06	35.27	1	3481000			45036	3643	31163	31214	50487	50487					-0.024573157652639566
LMYDGTKEV	9	Unmodified	_LMYDGTKEV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2577514648438	2	528.257525	1054.5005	-1.3842	-0.00073124	1.094	0.00057794	-0.29021	-0.0001533	528.2580008391997	44.724	0.8539	44.575	44.19	45.044	-0.1488					69	24	4	0	0	0	0.2101	1	4270	4270		87.696	5.4559	1	3738300			45037	3643	31163	31214	50488	50488					-0.024573157652639566
LMYDGTKEV	9	Unmodified	_LMYDGTKEV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2574462890625	2	528.257525	1054.5005	-0.23893	-0.00012622	-0.17358	-9.1695E-05	-0.41251	-0.00021791	528.2573166518293	44.572	1.0311	44.609	44.273	45.304	0.0369					68	27	4	0	0	0	0.43628	1	4213	4213		63.534	3.2399	1	3330800			45038	3643	31163	31214	50489	50489					-0.024573157652639566
LMYDGTKEV	9	Unmodified	_LMYDGTKEV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.25732421875	2	528.257525	1054.5005	-1.0641	-0.00056214	0.53001	0.00027998	-0.53413	-0.00028216	528.2576552569942	44.717	0.76222	44.617	44.392	45.154	-0.099449					45	19	3	0	0	0	0.03201	2	4187	4187;4199		139.97	55.055	1	2495500			45039	3643	31163	31214	50490;50491	50490					-0.024573157652639566
LMYDGTKEV	9	Unmodified	_LMYDGTKEV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2570190429688	2	528.257525	1054.5005	-0.85778	-0.00045313	0.057775	3.052E-05	-0.80001	-0.00042261	528.2574338251786	44.905	0.86612	44.652	44.391	45.258	-0.25252					42	22	3	0	0	0	0.03666	2	4216	4204;4216		136.27	62.013	1	2810700			45040	3643	31163	31214	50492;50493	50493					-0.024573157652639566
LMYDGTKEV	9	Unmodified	_LMYDGTKEV_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2572021484375	2	528.257525	1054.5005	-0.65671	-0.00034691	-0.065786	-3.4752E-05	-0.7225	-0.00038166	528.2574115267511	44.908	0.55135	44.697	44.436	44.988	-0.21109					34	13	3	0	0	0	0.03201	3	4205	4195;4205;4218		139.97	49.194	1	2690300			45041	3643	31163	31214	50494;50495;50496	50495					-0.024573157652639566
LMYICTDQL	9	Unmodified	_LMYICTDQL_					0	0	0		ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55001700-55002231:+|nuORF;ARHGAP5|p.R210Ifs*5|1|0.16|ENSG00000100852|chr14:32091297-32091310|AGAGAAGTTCAGGC/-|frameshift_variant;ARHGAP5|p.L350Cfs*4|1|0.27|ENSG00000100852|chr14:32091715-32091715|T/-|frameshift_variant	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2606811523438	2	550.261753	1098.50895	-1.4382	-0.00079136	1.4188	0.00078071	-0.019364	-1.0655E-05	550.2624641323065	91.314	1.3095	91.165	90.772	92.082	-0.1487					68	30	3	0	0	0	0.34489	1	11205	11205		69.628	0.8408	1	3445400			45042	125	31164	31215	50497	50497					-0.03636085120297139
LMYSCMDLY	9	Unmodified	_LMYSCMDLY_					0	0	0		ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7738037109375	2	569.734514	1137.45447	0.55888	0.00031841	0.20897	0.00011906	0.76785	0.00043747	569.7344387730113	78.253	0.72668	78.021	77.75	78.476	-0.23141					39	16	3	0	0	0	0.024183	1	9316	9316		60.294	5.5293	1	449790			45043	11711	31165	31216	50498	50498					-0.10875420263369051
LNAACLQPR	9	Unmodified	_LNAACLQPR_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|42|3|sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|42|3|sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|42|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3057861328125	2	493.266019	984.517485	0.61358	0.00030266	-0.090801	-4.4789E-05	0.52278	0.00025787	493.2640723420633	84.964	0.33126	84.827	84.577	84.908	-0.13752					9	7	2	0	0	0	0.024354	1	10285	10285		38.806	6.8513	1	21557			45044	17904	31166	31217	50499	50499					0.024606496311889714
LNAAFVLVGSV	11	Unmodified	_LNAAFVLVGSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3162231445312	2	545.318774	1088.623	-0.49641	-0.0002707	-2.8445	-0.0015511	-3.3409	-0.0018218	545.3167995568245	101.47	1.1348	101.46	101.15	102.28	-0.0054474					62	25	4	0	0	0	0.95882	1	12929	12929		45.972	1.5951	1	1300000			45045	2485	31167	31218	50500	50500					0.08222889028479585
LNAALAFVKV	10	Unmodified	_LNAALAFVKV_					0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3135375976562	2	523.32386	1044.63317	-0.34523	-0.00018067	0.3973	0.00020791	0.052062	2.7246E-05	523.3239235776667	73.437	0.33762	73.446	73.181	73.519	0.0096512					12	8	2	0	0	0	0.03519	1	8853	8853		21.96	0	1	156050	+	+	45046	19579	31168	31219	50501	50501					0.1126349675369056
LNAAPLSSLV	10	Unmodified	_LNAAPLSSLV_					0	0	0		ENST00000316549.10_1_3:142984712-142984892:-|nuORF	ENST00000316549.10_1_3:142984712-142984892:-|nuORF	ENST00000316549.10_1_3:142984712-142984892:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7789001464844	2	492.78985	983.565146	-1.3406	-0.00066063	1.4442	0.00071168	0.10359	5.1048E-05	492.79047565030015	49.47	0.41512	49.544	49.316	49.731	0.074196					18	10	2	0	0	0	0.03519	1	5076	5076		42.396	0	1	397040			45047	12147	31169	31220	50502	50502					0.07270627103059724
LNAATCRDL	9	Unmodified	_LNAATCRDL_					0	0	0		ENSG00000187957|ENST00000341772|DNER	ENSG00000187957|ENST00000341772|DNER	ENSG00000187957|ENST00000341772|DNER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2979431152344	2	488.747659	975.480765	-0.4893	-0.00023915	-1.401	-0.00068475	-1.8903	-0.0009239	488.74669389863465	26.649	0.92107	26.626	26.203	27.124	-0.023087					38	22	2	0	0	0	0.024466	1	1430	1430		24.519	0	1	218610			45048	9678	31170	31221	50503	50503					-0.007956469853752424
LNACHMVAR	9	Unmodified	_LNACHMVAR_					0	0	0		ENST00000490711.5_1_6:32138036-32144343:-|nuORF	ENST00000490711.5_1_6:32138036-32144343:-|nuORF	ENST00000490711.5_1_6:32138036-32144343:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.77783203125	2	507.752221	1013.48989	-1.4368	-0.00072954	2.7235	0.0013829	1.2867	0.00065332	507.7531275139719	49.372	0.22529	49.446	49.352	49.578	0.074196					7	5	2	0	0	0	0.024263	1	5032	5032		19.997	0	1	55115			45049	15437	31171	31222	50504	50504					-0.0163157690068374
LNAEALAAIL	10	Unmodified	_LNAEALAAIL_					0	0	0		nc|ENSG00000214575|Q9BZB8-4|CPEB1;nc|ENSG00000214575|Q9BZB8-2|CPEB1;nc|ENSG00000214575|Q9BZB8-3|CPEB1;nc|ENSG00000214575|Q9BZB8|CPEB1;ENSG00000214575|ENST00000684509|CPEB1	nc|ENSG00000214575|Q9BZB8-4|CPEB1	nc|ENSG00000214575|Q9BZB8-4|CPEB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3133850097656	2	499.797675	997.580796	-0.080028	-3.9998E-05	0.41428	0.00020706	0.33425	0.00016706	499.79815811298494	77.421	0.4646	77.21	76.954	77.418	-0.21087					16	10	2	0	0	0	0.03519	1	9551	9551		52.937	5.2794	1	146530			45050	10558	31172	31223	50505	50505					0.08190913620080664
LNAGNFNFPSE	11	Unmodified	_LNAGNFNFPSE_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.8630676269531	3	403.85601	1208.5462	-0.60737	-0.00024529	-1.5036	-0.00060726	-2.111	-0.00085255	403.8551985360951	28.098	0.47393	27.947	27.729	28.203	-0.15195					18	11	2	0	0	0	0.02473	1	1554	1554		26.75	0	1	91421			45051	1881	31173	31224	50506	50506					-0.04972954258664686
LNAHHKCID	9	Unmodified	_LNAHHKCID_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.305419921875	2	525.761101	1049.50765	-0.18988	-9.9833E-05	-3.6301	-0.0019085	-3.8199	-0.0020084	525.759094547379	69.892	0.6824	69.904	69.349	70.032	0.012421					21	16	2	0	0	0	0.024381	1	8330	8330		21.96	0	1	253070	+		45052	23909	31174	31225	50507	50507					-0.015125383741860787
LNAHMNAT	8	Unmodified	_LNAHMNAT_					0	0	0		ENSG00000112175|ENST00000370830|BMP5;ENSG00000153162|ENST00000283147|BMP6	ENSG00000112175|ENST00000370830|BMP5;ENSG00000153162|ENST00000283147|BMP6	ENSG00000112175|ENST00000370830|BMP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7644348144531	2	436.20817	870.401786	-0.25291	-0.00011032	0.44691	0.00019495	0.194	8.4626E-05	436.2082517099834	20.685	2.2142	20.58	19.362	21.576	-0.10477					60	45	2	0	0	0	0.027866	1	497	497		19.36	0	1	40157			45053	3179;6325	31175	31226	50508	50508					-0.038598742196541025
LNAIHFQGF	9	Unmodified	_LNAIHFQGF_					0	0	0		CON__P28800;nc|ENSG00000167711|P08697-2|SERPINF2;ENSG00000167711|ENST00000453066|SERPINF2	CON__P28800;nc|ENSG00000167711|P08697-2|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.708740234375	2	523.774534	1045.53451	-0.61391	-0.00032155	-2.5695	-0.0013458	-3.1834	-0.0016674	523.7726723124373	43.243	0.57394	43.017	42.559	43.133	-0.22597					16	14	2	0	0	0	0.024412	1	3928	3928		24.203	3.2558	1	148370		+	45054	528;7728	31176	31227	50509	50509					0.013568935086595957
LNAILIPP	8	Unmodified	_LNAILIPP_					0	0	0		ENST00000493059.1_1_19:42734948-42736858:-|nuORF;ENSG00000105723|ENST00000222330|GSK3A	ENST00000493059.1_1_19:42734948-42736858:-|nuORF	ENST00000493059.1_1_19:42734948-42736858:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.76092529296875	2	425.773471	849.53239	0.6599	0.00028097	-2.5978	-0.0011061	-1.9379	-0.00082509	425.77180993291387	58.997	0.28613	59.083	58.884	59.171	0.085682					9	7	2	0	0	0	0.027866	1	6621	6621		35.201	3.6218	1	56074			45055	2717	31177	31228	50510	50510					0.10160464770854105
LNALKSQSL	9	Unmodified	_LNALKSQSL_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ARAP2|p.I568V|1|0.11|ENSG00000047365|chr4:36177982-36177982|T/C|missense_variant;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2879333496094	2	487.287474	972.560395	-0.62392	-0.00030403	0.97442	0.00047482	0.3505	0.00017079	487.2876205089054	33.312	0.83247	33.146	32.8	33.632	-0.16565					64	20	5	0	0	0	0.77768	1	2359	2359		40.778	3.6191	1	1193800			45056	1101;15776	31178	31229	50511	50511					0.0730174296027144
LNALVKPSI	9	Unmodified	_LNALVKPSI_					0	0	0			REV__ENSG00000255804|ENST00000540461|OR6J1	REV__ENSG00000255804|ENST00000540461|OR6J1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7857360839844	2	477.80276	953.590967	-0.57517	-0.00027482	1.7542	0.00083817	1.179	0.00056335	477.8032674677997	91.087	0.6992	90.964	90.714	91.413	-0.12341					29	16	3	0	0	0	0.024292	1	11191	11191		19.104	0	1	420010	+		45057	29073	31179	31230	50512	50512					0.11231521345325746
LNANKGIEV	9	Unmodified	_LNANKGIEV_					0	0	0			REV__ENST00000427077.1_1_2:102957780-102959889:+|nuORF	REV__ENST00000427077.1_1_2:102957780-102959889:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7925720214844	2	479.271824	956.529095	0.22506	0.00010787	-0.43348	-0.00020776	-0.20842	-9.989E-05	479.27147490132114	50.948	0.37309	50.671	50.443	50.816	-0.27643					16	9	3	0	0	0	0.02435	1	5197	5197		19.997	8.4858	1	225130	+		45058	22218	31180	31231	50513	50513					0.04909169926202139
LNAPLAGPK	9	Unmodified	_LNAPLAGPK_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.85357666015625	2	440.766178	879.517802	-0.33442	-0.0001474	0.50796	0.00022389	0.17354	7.6491E-05	440.7663488770962	31.677	0.48275	31.436	31.295	31.778	-0.24109					20	11	2	0	0	0	0.024436	1	2136	2136		16.473	0	1	161950	+		45059	28201	31181	31232	50514	50514					0.07322392622700136
LNAPSSTPW	9	Unmodified	_LNAPSSTPW_					0	0	0		ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1;ENSG00000185775|ENST00000332857|SPATA31A6	ENSG00000276581|ENST00000437823|SPATA31A5	ENSG00000276581|ENST00000437823|SPATA31A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2613525390625	2	486.742899	971.471246	-0.96533	-0.00046987	4.3	0.002093	3.3347	0.0016231	486.7447772863602	45.992	0.45337	45.84	45.683	46.136	-0.15156					17	12	2	0	0	0	0.024466	1	4539	4539		25.45	0	1	154980			45060	10382	31182	31233	50515	50515					-0.01563091999230437
LNAQKRKEP	9	Unmodified	_LNAQKRKEP_					0	0	0			REV__nc|ENSG00000181982|Q6ZUS6|CCDC149	REV__nc|ENSG00000181982|Q6ZUS6|CCDC149	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.30029296875	2	542.317097	1082.61964	-1.5148	-0.00082149	0.89672	0.00048631	-0.61806	-0.00033518	542.3169753329662	64.819	0.28973	64.819	64.654	64.944	0					12	7	2	0	0	0	0.024405	1	7637	7637		44.117	10.601	1	191740	+		45061	27441	31183	31234	50516	50516					0.08163638974474452
LNAQNKLLF	9	Unmodified	_LNAQNKLLF_					0	0	0			REV__nc|ENSG00000187984|Q9H560|ANKRD19P	REV__nc|ENSG00000187984|Q9H560|ANKRD19P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2784423828125	2	530.811116	1059.60768	-0.15133	-8.0329E-05	0.12787	6.7877E-05	-0.023458	-1.2452E-05	530.8114394300011	68.794	1.1798	68.501	68.132	69.312	-0.29267					70	30	4	0	0	0	0.024466	1	8341	8341		18.324	0	1	2910700	+		45062	33227	31184	31235	50517	50517					0.0802602223127451
LNAQNKLLF	9	Unmodified	_LNAQNKLLF_					0	0	0			REV__nc|ENSG00000187984|Q9H560|ANKRD19P	REV__nc|ENSG00000187984|Q9H560|ANKRD19P	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.811116	1059.60768	0.062705	3.3285E-05	-0.21919	-0.00011635	-0.15649	-8.3066E-05	530.811240945779	68.494	1.0142	68.513	68.198	69.212	0.018913	0.041163	-0.00046938	NaN	24.203	60	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2792500	+		45063	33227	31184	31235							0.0802602223127451
LNASRTIDE	9	Unmodified	_LNASRTIDE_					0	0	0			REV__nc|ENSG00000143995|O00470-2|MEIS1	REV__nc|ENSG00000143995|O00470-2|MEIS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.76153564453125	2	509.76182	1017.50909	-1.2032	-0.00061334	3.7477	0.0019105	2.5445	0.0012971	509.76350550618736	62.327	0.46295	62.327	62.149	62.612	0					21	14	2	0	0	0	0.82115	1	7263	7263		37.812	2.1932	1	1588100	+		45064	36742	31185	31236	50518	50518					0.0010337419556663008
LNASRTIDE	9	Unmodified	_LNASRTIDE_					0	0	0			REV__nc|ENSG00000143995|O00470-2|MEIS1	REV__nc|ENSG00000143995|O00470-2|MEIS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	509.76182	1017.50909	-1.2032	-0.00061334	3.7477	0.0019105	2.5445	0.0012971	509.76350550618736	62.327	0.46295	62.327	62.149	62.612	0	0.0093951	0.00044923	NaN	37.812	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1588100	+		45065	36742	31185	31236							0.0010337419556663008
LNASRTIDE	9	Unmodified	_LNASRTIDE_					0	0	0			REV__nc|ENSG00000143995|O00470-2|MEIS1	REV__nc|ENSG00000143995|O00470-2|MEIS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.76182	1017.50909	-1.1448	-0.00058358	2.9794	0.0015188	1.8346	0.00093523	509.7632889535835	62.245	0.48822	62.308	62.16	62.648	0.062767	-0.0093951	-0.00033407	NaN	37.812	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1426200	+		45066	36742	31185	31236							0.0010337419556663008
LNATARLIAE	10	Unmodified	_LNATARLIAE_					0	0	0			REV__ENSG00000130560|ENST00000371756|UBAC1	REV__ENSG00000130560|ENST00000371756|UBAC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3117065429688	2	536.31148	1070.60841	0.51774	0.00027767	0.39697	0.0002129	0.91471	0.00049057	536.3117782675039	59.287	1.6514	59.287	58.714	60.366	0					121	44	4	0	0	0	0.47897	1	6753	6753		90.601	2.9044	1	11726000	+		45067	23127	31186	31237	50519	50519					0.07592816880332975
LNATIAEVL	9	Unmodified	_LNATIAEVL_					0	0	0		nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.3002624511719	2	472.276575	942.538597	1.1334	0.00053528	0.32436	0.00015319	1.4578	0.00068846	472.27664494549833	20.263	0.43208	20.068	19.854	20.286	-0.19577					11	8	2	0	0	0	0.024405	1	503	503		53.351	14.545	1	13414			45068	10700	31187	31238	50520	50520					0.06502938211713172
LNAYDGLKT	9	Unmodified	_LNAYDGLKT_					0	0	0			REV__ENSG00000163554|ENST00000643759|SPTA1	REV__ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.77435302734375	2	497.763832	993.513111	0.39138	0.00019481	-0.62775	-0.00031247	-0.23637	-0.00011766	497.76178825862957	77.558	0.16335	77.558	77.469	77.632	0					5	3	2	0	0	0	0.024427	1	9591	9591		34.173	0	1	34024	+		45069	25591	31188	31239	50521	50521					0.01609463689283075
LNCEPVRAL	9	Carbamidomethyl (C)	_LNC(Carbamidomethyl (C))EPVRAL_	LNC(1)EPVRAL		LNC(96)EPVRAL		0	1	0			REV__ENSG00000164512|ENST00000341048|ANKRD55	REV__ENSG00000164512|ENST00000341048|ANKRD55	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.284408	1070.55426	0.15418	8.2686E-05	-1.7606	-0.00094417	-1.6064	-0.00086149	536.2836866575549	19.083	0.14703	18.88	18.757	18.904	-0.20371					4	2	2	0	0	0	0.022587	1	369	369		96.19	13.885	1	14934	+		45070	25766	31189	31240	50522	50522	342				0.021809014570862928
LNCGPPPI	8	Unmodified	_LNCGPPPI_					0	0	0		ENST00000368096.5_1_1:159893305-159893494:-|nuORF	ENST00000368096.5_1_1:159893305-159893494:-|nuORF	ENST00000368096.5_1_1:159893305-159893494:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7452087402344	2	405.712556	809.41056	1.5456	0.00062706	-4.3325	-0.0017578	-2.7869	-0.0011307	405.71013887494394	45.363	0.29794	45.406	45.214	45.512	0.043877					10	8	2	0	0	0	0.027866	1	4348	4348		42.474	0	1	48587			45071	12881	31190	31241	50523	50523					-0.0017690058316475188
LNCGPPPI	8	Unmodified	_LNCGPPPI_					0	0	0		ENST00000368096.5_1_1:159893305-159893494:-|nuORF	ENST00000368096.5_1_1:159893305-159893494:-|nuORF	ENST00000368096.5_1_1:159893305-159893494:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7452087402344	2	405.712556	809.41056	1.5592	0.00063258	3.7445	0.0015192	5.3037	0.0021518	405.71399210469184	45.417	0.17048	45.461	45.409	45.58	0.043877					6	4	2	0	0	0	0.027866	1	4348	4348		42.474	0	1	336990			45072	12881	31190	31241	50524	50524					-0.0017690058316475188
LNCIEELLK	9	Unmodified	_LNCIEELLK_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7973022460938	2	537.796817	1073.57908	-0.15802	-8.4984E-05	0.26332	0.00014161	0.1053	5.6629E-05	537.7968506342702	77.823	3.8719	77.613	76.789	80.661	-0.21087					197	92	3	0	0	0	0.2101	1	9564	9564		87.696	0	1	2474600	+		45073	20777	31191	31242	50525	50525					0.04523536539818451
LNCLCELSK	9	Unmodified	_LNCLCELSK_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2539672851562	2	511.754095	1021.49364	-0.67171	-0.00034375	3.8861	0.0019888	3.2144	0.001645	511.756074541778	80.488	0.62529	80.488	80.12	80.746	0					17	13	2	0	0	0	0.024541	1	10032	10032		19.997	11.765	1	237570			45074	6801	31192	31243	50526	50526					-0.01624951917483486
LNCLCELSK	9	Unmodified	_LNCLCELSK_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.754095	1021.49364	-0.13189	-6.7495E-05	-1.4325	-0.00073309	-1.5644	-0.00080059	512.2535387497019	80.683	0.49129	80.537	80.241	80.733	-0.146	0.024636	-0.0047044	NaN	19.997	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149650			45075	6801	31192	31243							-0.01624951917483486
LNCNPLEVPQ	10	Unmodified	_LNCNPLEVPQ_					0	0	0			REV__ENSG00000005421|ENST00000222381|PON1	REV__ENSG00000005421|ENST00000222381|PON1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8019409179688	2	563.781699	1125.54884	-0.74118	-0.00041787	2.0286	0.0011437	1.2874	0.00072581	563.7836517247179	32.18	0.1521	32.18	32.109	32.262	0					5	3	2	0	0	0	0.03519	1	2203	2203		64.207	18.255	1	51711	+		45076	19805	31193	31244	50527	50527					-0.008908221253477677
LNCQQATQI	9	Unmodified	_LNCQQATQI_					0	0	0		ENSG00000180730|ENST00000319420|SHISA2	ENSG00000180730|ENST00000319420|SHISA2	ENSG00000180730|ENST00000319420|SHISA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2945251464844	2	509.752941	1017.49133	1.0952	0.00055829	1.0794	0.00055023	2.1746	0.0011085	509.7526725944699	63.776	0.39557	63.776	63.522	63.917	0					18	10	2	0	0	0	0.024457	1	7441	7441		29.15	6.1071	1	137860			45077	8993	31194	31245	50528	50528					-0.016716643309337087
LNCQRKVQ	8	Unmodified	_LNCQRKVQ_					0	0	0			REV__ENST00000345732.8_1_11:60237332-60237389:+|nuORF	REV__ENST00000345732.8_1_11:60237332-60237389:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2893981933594	2	494.771468	987.528384	0.26876	0.00013297	2.3	0.001138	2.5688	0.0012709	494.7725675310191	61.223	0.22723	61.294	61.167	61.394	0.071125					7	5	2	0	0	0	0.027866	1	6983	6983		31.955	1.6371	1	130750	+		45078	30699	31195	31246	50529	50529					0.03412052005489841
LNCRELTLE	9	Unmodified	_LNCRELTLE_					0	0	0			REV__ENSG00000220008|ENST00000698372|LINGO3	REV__ENSG00000220008|ENST00000698372|LINGO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.271484375	2	545.781699	1089.54884	-0.77737	-0.00042427	-0.070051	-3.8233E-05	-0.84742	-0.0004625	545.7814929858816	64.311	0.51438	64.056	63.755	64.269	-0.25563					19	12	2	0	0	0	0.024447	1	7273	7273		32.812	0	1	571690	+		45079	28827	31196	31247	50530	50530					0.007651778746321725
LNCVIPVVL	9	Unmodified	_LNCVIPVVL_					0	0	0		ENST00000429429.6_2_4:1694966-1695095:-|nuORF	ENST00000429429.6_2_4:1694966-1695095:-|nuORF	ENST00000429429.6_2_4:1694966-1695095:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2820129394531	2	485.293714	968.572874	-0.15451	-7.4984E-05	2.5173	0.0012216	2.3628	0.0011466	485.294076051304	89.35	0.4621	89.35	89.102	89.564	0					22	10	3	0	0	0	0.024466	1	11264	11264		25.45	3.7478	1	131940			45080	14147	31197	31248	50531	50531					0.08733063098975435
LNCVLEGDPV	10	Unmodified	_LNCVLEGDPV_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7626953125	2	529.762975	1057.5114	-0.7093	-0.00037576	0.78046	0.00041346	0.071155	3.7695E-05	529.7632087230267	83.034	0.76826	83.06	82.531	83.3	0.026558					38	17	3	0	0	0	0.64538	1	10298	10298		71.877	3.0906	1	741930			45081	1631	31198	31249	50532	50532					-0.01505913390974456
LNCYIDIEKE	10	Unmodified	_LNCYIDIEKE_					0	0	0			REV__CON__Q7Z3Y9	REV__CON__Q7Z3Y9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2273864746094	3	413.86904	1238.58529	-0.61268	-0.00025357	-0.44582	-0.00018451	-1.0585	-0.00043808	413.8687011937132	36.953	0.78268	36.733	36.488	37.271	-0.2195					33	19	3	0	0	0	0.03519	1	2922	2922		31.634	13.801	1	363750	+	+	45082	19600	31199	31250	50533	50533					-0.024459900193051
LNCYSGCRA	9	Unmodified	_LNCYSGCRA_					0	0	0			REV__ENST00000370902.7_1_10:99202997-99205519:-|nuORF	REV__ENST00000370902.7_1_10:99202997-99205519:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.779541015625	2	493.712762	985.410971	0.025114	1.2399E-05	1.8302	0.00090358	1.8553	0.00091598	493.7121020109384	50.217	0.26745	50.065	49.924	50.191	-0.1512					9	7	2	0	0	0	0.024506	1	5188	5188		23.042	0	1	30920	+		45083	31142	31200	31251	50534	50534					-0.08231848925629492
LNCYSLEIATW	11	Unmodified	_LNCYSLEIATW_					0	0	0		ENST00000361028.5_1_6:28350065-28350296:-|nuORF	ENST00000361028.5_1_6:28350065-28350296:-|nuORF	ENST00000361028.5_1_6:28350065-28350296:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.52923583984375	3	438.212918	1311.61692	0.10262	4.4968E-05	-0.33241	-0.00014567	-0.2298	-0.0001007	438.21280830125977	31.971	0.47612	31.781	31.599	32.076	-0.19005					13	10	2	0	0	0	0.024757	1	2176	2176		28.577	1.827	1	34500			45084	12783	31201	31252	50535	50535					-0.026419972653684454
LNDEPPAI	8	Unmodified	_LNDEPPAI_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.74798583984375	2	434.724175	867.433798	0.10948	4.7592E-05	1.4673	0.00063786	1.5768	0.00068545	434.7249960992046	65.245	0.24075	65.282	65.081	65.321	0.037384					12	6	2	0	0	0	0.027866	1	7638	7638		65.803	7.9919	1	419370	+		45085	24084	31202	31253	50536	50536					-0.005221832648544478
LNDFIRTP	8	Unmodified	_LNDFIRTP_					0	0	0		nc|ENSG00000106013|Q92527-2|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	nc|ENSG00000106013|Q92527-2|ANKRD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.30517578125	2	488.266542	974.51853	-0.096894	-4.731E-05	-0.40527	-0.00019788	-0.50217	-0.00024519	488.26634316283304	19.764	1.1694	19.603	19.331	20.501	-0.16079					54	23	4	0	0	0	0.027866	1	450	450		42.396	8.2236	1	2127500			45086	18153	31203	31254	50537	50537					0.030251872717599326
LNDIYEEEP	9	Unmodified	_LNDIYEEEP_					0	0	0		ENSG00000115947|ENST00000392857|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;CON__Q2YDI2	ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2	ENSG00000115947|ENST00000392857|ORC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.784423828125	2	561.253494	1120.49243	-0.95033	-0.00053338	3.9832	0.0022356	3.0328	0.0017022	561.2554738888215	46.07	0.87753	45.868	45.563	46.441	-0.20226					26	23	2	0	0	0	0.024457	1	4469	4469		15.642	0	1	120070		+	45087	3502;549	31204	31255	50538	50538					-0.06299171481032317
LNDIYEEEP	9	Unmodified	_LNDIYEEEP_					0	0	0		ENSG00000115947|ENST00000392857|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;CON__Q2YDI2	ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2	ENSG00000115947|ENST00000392857|ORC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.253494	1120.49243	-0.17272	-9.6939E-05	3.6121	0.0020273	3.4394	0.0019304	561.2553193381499	45.993	1.5724	45.993	45.679	47.252	0	0.071012	-0.00078428	NaN	10.265	58	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235870		+	45088	3502;549	31204	31255							-0.06299171481032317
LNDIYEEEP	9	Unmodified	_LNDIYEEEP_					0	0	0		ENSG00000115947|ENST00000392857|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;CON__Q2YDI2	ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2	ENSG00000115947|ENST00000392857|ORC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	561.253494	1120.49243	-1.2024	-0.00067484	4.8394	0.0027161	3.637	0.0020413	561.2561583761963	46.058	0.96821	45.906	45.512	46.481	-0.15157	-0.016446	0.00059334	NaN	10.265	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198880		+	45089	3502;549	31204	31255							-0.06299171481032317
LNDKKEQIL	9	Unmodified	_LNDKKEQIL_					0	0	0			REV__ENST00000479309.6_1_2:169690730-169745796:-|nuORF	REV__ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2820434570312	2	550.819138	1099.62372	-0.52013	-0.0002865	0.12966	7.1418E-05	-0.39047	-0.00021508	550.8190335154718	56.76	0.76928	56.76	56.497	57.266	0					43	21	3	0	0	0	0.024477	1	6430	6430		35.618	4.0885	1	835790	+		45090	24828	31205	31256	50539	50539					0.07789683677515313
LNDLFRCN	8	Unmodified	_LNDLFRCN_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.30218505859375	2	497.742376	993.4702	-0.042828	-2.1317E-05	1.2612	0.00062775	1.2184	0.00060643	497.7416780203481	82.134	0.45393	82.134	81.909	82.363	0					13	10	2	0	0	0	0.027866	1	10235	10235		25.574	0	1	93473			45091	18030	31206	31257	50540	50540					-0.026796296397947117
LNDLIGLLI	9	Unmodified	_LNDLIGLLI_					0	0	0			REV__ENSG00000100219|ENST00000344347|XBP1	REV__ENSG00000100219|ENST00000344347|XBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.79510498046875	2	492.310418	982.606283	0.0065521	3.2257E-06	0.19615	9.6567E-05	0.2027	9.9792E-05	492.3105398171591	97.182	0.93489	97.182	96.836	97.771	0					38	20	3	0	0	0	0.024506	1	12432	12432		16.473	0	1	168230	+		45092	21067	31207	31258	50541	50541					0.11428388142530821
LNDNFVKLI	9	Unmodified	_LNDNFVKLI_					0	0	0		ENSG00000105679|ENST00000222286|GAPDHS	ENSG00000105679|ENST00000222286|GAPDHS	ENSG00000105679|ENST00000222286|GAPDHS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2975463867188	2	538.310949	1074.60735	0.24354	0.0001311	-2.7784	-0.0014956	-2.5349	-0.0013645	538.3086711740797	59.601	1.0992	59.401	58.994	60.093	-0.20016					71	29	4	0	0	0	0.024021	1	6792	6792		58.782	0	1	3118500			45093	2708	31208	31259	50542	50542					0.07302602511435907
LNDRASVLY	9	Unmodified	_LNDRASVLY_					0	0	0		ENST00000307714.12_1_1:32503693-32508222:+|nuORF	ENST00000307714.12_1_1:32503693-32508222:+|nuORF	ENST00000307714.12_1_1:32503693-32508222:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.783447265625	2	525.782556	1049.55056	-0.016827	-8.8472E-06	-0.37443	-0.00019687	-0.39126	-0.00020572	525.7824062473394	49.726	1.0136	49.621	49.259	50.273	-0.10558					90	26	6	0	0	0	0.39228	2	5002	5002;5026		66.429	6.311	1	15556000			45094	12013	31209	31260	50543;50544	50543					0.027765549549030766
LNDRASVLY	9	Unmodified	_LNDRASVLY_					0	0	0		ENST00000307714.12_1_1:32503693-32508222:+|nuORF	ENST00000307714.12_1_1:32503693-32508222:+|nuORF	ENST00000307714.12_1_1:32503693-32508222:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7830200195312	2	525.782556	1049.55056	-0.067203	-3.5334E-05	-0.39113	-0.00020565	-0.45833	-0.00024098	525.7823705063088	49.99	1.1902	49.71	49.359	50.549	-0.27977					84	31	6	0	0	0	0.59099	2	5022	5022;5043		53.351	3.9099	1	15789000			45095	12013	31209	31260	50545;50546	50545					0.027765549549030766
LNDSLLKPPVV	11	Unmodified	_LNDSLLKPPVV_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8565673828125	2	597.858264	1193.70197	-1.1131	-0.00066547	-1.508	-0.0009016	-2.6211	-0.0015671	598.3593015087366	90.895	2.4279	90.77	89.373	91.801	-0.12512					145	57	3	0	0	0	1.0292	1	11017	11017		30.318	0	1	2839900	+		45096	23950	31210	31261	50547	50547					0.11287116262769814
LNDTFKEL	8	Unmodified	_LNDTFKEL_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.25750732421875	2	490.258382	978.502212	-0.68729	-0.00033695	-0.25279	-0.00012393	-0.94008	-0.00046088	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	0.89627	1	13173	13173		51.335	5.3632	1	5001000			45097	5647	31211	31262	50548	50548					0.012100613149868877
LNDTSIGLN	9	Unmodified	_LNDTSIGLN_					0	0	0			REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2663269042969	2	473.745639	945.476725	0.56667	0.00026846	0.037308	1.7674E-05	0.60398	0.00028613	473.7453256514269	77.421	0.58767	77.211	77.037	77.624	-0.21087					14	13	2	0	0	0	0.0245	1	9532	9532		22.58	3.2197	1	74967	+		45098	26858	31212	31263	50549	50549					0.0018058679256682808
LNDTVTVRLS	10	Unmodified	_LNDTVTVRLS_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2431030273438	2	559.31422	1116.61389	-0.43631	-0.00024403	3.7722	0.0021099	3.3359	0.0018658	559.3160814511331	70.053	0.63054	69.786	69.41	70.04	-0.26725					25	14	2	0	0	0	0.03519	1	8116	8116		52.937	0	1	388760			45099	8414	31213	31264	50550	50550					0.060244956721589915
LNDVKYSV	8	Unmodified	_LNDVKYSV_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.7633972167969	2	469.2531	936.491647	0.35289	0.0001656	-0.11672	-5.4772E-05	0.23617	0.00011082	469.2528937494072	71.796	0.67612	71.521	71.273	71.949	-0.2751					27	16	2	0	0	0	0.027866	1	8448	8448		32.812	9.7699	1	212860	+		45100	20583	31214	31265	50551	50551					0.0208607866057946
LNEDLELLI	9	Unmodified	_LNEDLELLI_					0	0	0			REV__ENSG00000172331|ENST00000344924|BPGM	REV__ENSG00000172331|ENST00000344924|BPGM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3291625976562	2	536.300247	1070.58594	0.281	0.0001507	1.8337	0.00098342	2.1147	0.0011341	536.300577809098	18.973	0.44439	18.812	18.54	18.984	-0.16079					11	8	2	0	0	0	0.018452	1	370	370		122.18	5.2724	1	67822	+		45101	26660	31215	31266	50552	50552					0.05347172692040658
LNEEHDGLL	9	Unmodified	_LNEEHDGLL_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-4|PATL1	REV__nc|ENSG00000166889|Q86TB9-4|PATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8252563476562	2	520.256371	1038.49819	-0.89725	-0.0004668	3.3939	0.0017657	2.4966	0.0012989	520.2577540006326	81.467	0.20607	81.491	81.37	81.576	0.023911					6	4	2	0	0	0	0.024405	1	10060	10060		44.117	7.0883	1	47378	+		45102	26075	31216	31267	50553	50553					-0.019520281786981286
LNEELEYF	8	Unmodified	_LNEELEYF_					0	0	0		ENST00000317357.9_1_6:107979792-107980005:+|nuORF	ENST00000317357.9_1_6:107979792-107980005:+|nuORF	ENST00000317357.9_1_6:107979792-107980005:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2750244140625	2	528.747847	1055.48114	-0.3721	-0.00019675	-1.7999	-0.0009517	-2.172	-0.0011484	528.7462601809883	47.644	0.76289	47.491	47.161	47.924	-0.15301					62	22	4	0	0	0	0.027866	1	4736	4736		38.806	1.647	1	1612100			45103	12163	31217	31268	50554	50554					-0.04437948784516266
LNEFTEKSV	9	Unmodified	_LNEFTEKSV_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2548217773438	2	533.774396	1065.53424	-0.63251	-0.00033762	-0.60442	-0.00032263	-1.2369	-0.00066024	533.7741016725948	40.741	0.71655	40.516	40.368	41.085	-0.225					29	18	2	0	0	0	0.021513	1	3546	3546		71.877	0	1	280070	+		45104	20689	31218	31269	50555	50555					0.004094289981367183
LNEFTEKSV	9	Unmodified	_LNEFTEKSV_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2553100585938	2	533.774396	1065.53424	-1.5431	-0.00082367	0.2854	0.00015234	-1.2577	-0.00067133	533.7745298824758	40.823	0.77635	40.593	40.343	41.119	-0.2303					30	20	2	0	0	0	0.022832	1	3547	3547		71.877	0	1	332780	+		45105	20689	31218	31269	50556	50556					0.004094289981367183
LNEGHNVYV	9	Unmodified	_LNEGHNVYV_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7951049804688	2	522.759081	1043.50361	-0.015757	-8.2373E-06	-2.3579	-0.0012326	-2.3736	-0.0012408	522.758583587044	68.683	0.70046	68.391	68.052	68.753	-0.29267					28	17	2	0	0	0	0.024484	1	8192	8192		37.812	21.338	1	272150	+		45106	36535	31219	31270	50557	50557					-0.01640304596230635
LNEIHIKKAT	10	Unmodified	_LNEIHIKKAT_					0	0	0		ENSG00000071073|ENST00000393487|MGAT4A	ENSG00000071073|ENST00000393487|MGAT4A	ENSG00000071073|ENST00000393487|MGAT4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2850952148438	2	583.84823	1165.68191	-0.82032	-0.00047894	0.79467	0.00046397	-0.025648	-1.4975E-05	583.8486704730692	55.513	1.7405	55.282	54.674	56.414	-0.23087					107	47	3	0	0	0	0.03519	1	5956	5956		60.118	12.461	1	471900			45107	1445	31220	31271	50558	50558					0.1056936532279451
LNEIKLEQL	9	Unmodified	_LNEIKLEQL_					0	0	0			REV__nc|ENSG00000048828|Q9NZB2-4|FAM120A	REV__nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2997436523438	2	550.321514	1098.62847	-0.7138	-0.00039282	2.7032	0.0014876	1.9894	0.0010948	550.3226730869267	66.758	0.29932	66.783	66.644	66.944	0.025261					11	6	2	0	0	0	0.022029	1	7879	7879		109.48	10.849	1	179600	+		45108	20142	31221	31272	50559	50559					0.08310567820262804
LNEIRVAQ	8	Unmodified	_LNEIRVAQ_					0	0	0			REV__ENSG00000116752|ENST00000369541|BCAS2	REV__ENSG00000116752|ENST00000369541|BCAS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.3127136230469	2	471.771991	941.529429	-0.095424	-4.5018E-05	-0.37421	-0.00017654	-0.46964	-0.00022156	471.77173245218336	45.269	0.47108	45.017	44.786	45.258	-0.25252					19	12	2	0	0	0	0.027866	1	4239	4239		57.811	0	1	355770	+		45109	22301	31222	31273	50560	50560					0.05632589646040742
LNEKNFLK	8	Unmodified	_LNEKNFLK_					0	0	0		ENST00000359139.7_1_22:50781822-50810543:+|nuORF	ENST00000359139.7_1_22:50781822-50810543:+|nuORF	ENST00000359139.7_1_22:50781822-50810543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.75531005859375	2	503.290017	1004.56548	-0.14507	-7.3011E-05	-1.2374	-0.00062279	-1.3825	-0.0006958	503.2892017789997	47.465	0.92155	47.368	47.046	47.967	-0.096649					37	24	3	0	0	0	0.027866	1	4602	4602		27.882	11.409	1	650730			45110	12729	31223	31274	50561	50561					0.06338046822907017
LNEKPVLD	8	Unmodified	_LNEKPVLD_					0	0	0			REV__ENST00000496254.5_1_3:52720087-52724795:+|nuORF	REV__ENST00000496254.5_1_3:52720087-52724795:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.78692626953125	2	464.260925	926.507297	0.67752	0.00031454	-0.28019	-0.00013008	0.39732	0.00018446	464.2606230548131	70.67	0.62529	70.67	70.44	71.065	0					30	14	3	0	0	0	0.027866	1	8579	8579		111.65	12.273	1	863380	+		45111	25661	31224	31275	50562	50562					0.04110365177609765
LNEKRTFF	8	Unmodified	_LNEKRTFF_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.8136596679688	2	527.787641	1053.56073	-1.2839	-0.0006776	4.0247	0.0021242	2.7409	0.0014466	527.7896538835107	44.06	0.95268	43.915	43.241	44.194	-0.14471					55	26	3	0	0	0	0.027866	1	4130	4130		38.806	0	1	1969000			45112	731;10161	31225	31276	50563	50563					0.03609162680140798
LNELDAETF	9	Unmodified	_LNELDAETF_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2510986328125	2	526.250754	1050.48696	-0.073965	-3.8924E-05	0.61512	0.00032371	0.54115	0.00028478	526.2506619527213	62.108	0.82606	61.85	61.464	62.29	-0.25725					47	20	4	0	0	0	0.32811	1	6963	6963		71.877	17.101	1	2365500	+		45113	26873	31226	31277	50564	50564					-0.03626850272848969
LNELGFIYGPD	11	Unmodified	_LNELGFIYGPD_					0	0	0			REV__ENSG00000161896|ENST00000293756|IP6K3	REV__ENSG00000161896|ENST00000293756|IP6K3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2073974609375	3	413.208161	1236.60265	0.37268	0.00015399	-3.2765	-0.0013539	-2.9038	-0.0011999	413.20683212142177	22.268	0.79174	22.079	21.628	22.42	-0.18894					34	16	4	0	0	0	1.0259	1	782	782		31.068	0.75043	1	231640	+		45114	25404	31227	31278	50565	50565					-0.006183264219998819
LNELPPQV	8	Unmodified	_LNELPPQV_					0	0	0			REV__nc|ENSG00000137713|P30154-3|PPP2R1B	REV__nc|ENSG00000137713|P30154-3|PPP2R1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.2554931640625	2	455.255643	908.496732	-0.39246	-0.00017867	1.2151	0.00055318	0.82264	0.00037451	455.25574281458364	45.644	0.87753	45.492	45.112	45.989	-0.15157					76	25	4	0	0	0	0.56592	1	4432	4432		79.451	18.479	1	5011300	+		45115	36703	31228	31279	50566	50566					0.038823825231816045
LNELRKDAL	9	Unmodified	_LNELRKDAL_					0	0	0			REV__ENSG00000132623|ENST00000378392|ANKEF1	REV__ENSG00000132623|ENST00000378392|ANKEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.31148	1070.60841	0.15806	8.4768E-05	0.45167	0.00024223	0.60972	0.000327	536.3124978878168	19.083	0.49383	18.88	18.609	19.102	-0.20371					15	9	3	0	0	0	0.023239	1	369	369		84.916	19.112	1	80852	+		45116	23300	31229	31280	50567	50567					0.07592816880310238
LNELTNLLL	9	Unmodified	_LNELTNLLL_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.297119140625	2	521.810782	1041.60701	0.072468	3.7814E-05	1.932	0.0010082	2.0045	0.001046	522.3111027698695	52.716	0.18829	52.808	52.638	52.826	0.091938					7	4	2	0	0	0	0.024495	1	5582	5582		19.997	4.355	1	76959	+		45117	28675	31230	31281	50568	50568					0.08787182791570558
LNENRELIA	9	Unmodified	_LNENRELIA_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.293288	1070.57202	0.16124	8.6473E-05	-1.8968	-0.0010173	-1.7356	-0.00093079	536.2922910449471	19.115	0.29585	18.911	18.658	18.954	-0.20371					8	5	2	0	0	0	0.022587	1	369	369		108.09	20.333	1	21409	+		45118	22451	31231	31282	50569	50569					0.03955939983643475
LNEPLGVPN	9	Unmodified	_LNEPLGVPN_					0	0	0			REV__ENSG00000166351|ENST00000299443|POTED	REV__ENSG00000166351|ENST00000299443|POTED	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7576599121094	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.98697	1	13248	13248		23.042	1.3402	1	4565500	+		45119	26006	31232	31283	50570	50570					0.0248548103485291
LNEPLHLSF	9	Unmodified	_LNEPLHLSF_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7548217773438	2	535.287474	1068.5604	-0.21898	-0.00011722	1.0457	0.00055977	0.82676	0.00044255	535.2876062588829	56.314	0.50901	56.098	55.881	56.39	-0.21607					20	12	2	0	0	0	0.024447	1	6130	6130		25.574	9.1009	1	489200			45120	1023	31233	31284	50571	50571					0.028857429602794582
LNEQNAQFV	9	Unmodified	_LNEQNAQFV_					0	0	0			REV__nc|ENSG00000163399|P05023-2|ATP1A1	REV__nc|ENSG00000163399|P05023-2|ATP1A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2802734375	2	531.764363	1061.51417	-0.54713	-0.00029094	-2.1341	-0.0011349	-2.6813	-0.0014258	531.7631641081193	81.342	0.49925	81.2	80.9	81.399	-0.14248					28	11	3	0	0	0	0.024539	1	9724	9724		27.882	1.1893	1	200950	+		45121	25564	31234	31285	50572	50572					-0.01412321941825212
LNEQNAQFV	9	Unmodified	_LNEQNAQFV_					0	0	0			REV__nc|ENSG00000163399|P05023-2|ATP1A1	REV__nc|ENSG00000163399|P05023-2|ATP1A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.764363	1061.51417	0.062933	3.3466E-05	-2.7733	-0.0014748	-2.7104	-0.0014413	531.7626924935273	81.325	0.49749	81.097	80.898	81.395	-0.2289	-0.048145	-0.00050201	NaN	14.865	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213400	+		45122	25564	31234	31285							-0.01412321941825212
LNEQREEAL	9	Unmodified	_LNEQREEAL_					0	0	0			REV__ENSG00000148335|ENST00000372483|NTMT1	REV__ENSG00000148335|ENST00000372483|NTMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8245239257812	2	551.280377	1100.5462	-0.51845	-0.00028581	0.58539	0.00032271	0.066941	3.6903E-05	551.2804637147021	36.251	0.51117	36.046	35.852	36.363	-0.20518					25	13	3	0	0	0	0.024436	1	2868	2868		38.806	1.647	1	487370	+		45123	24607	31235	31286	50573	50573					-4.9542586793904775E-05
LNEQREEAL	9	Unmodified	_LNEQREEAL_					0	0	0			REV__ENSG00000148335|ENST00000372483|NTMT1	REV__ENSG00000148335|ENST00000372483|NTMT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.280377	1100.5462	-1.2136	-0.00066905	0.77234	0.00042578	-0.44129	-0.00024328	551.2807752037121	36.16	0.72639	36.16	35.886	36.613	0	0.10795	3.1667E-05	NaN	23.042	57	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3086900	+		45124	24607	31235	31286							-4.9542586793904775E-05
LNEQREEAL	9	Unmodified	_LNEQREEAL_					0	0	0			REV__ENSG00000148335|ENST00000372483|NTMT1	REV__ENSG00000148335|ENST00000372483|NTMT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.280377	1100.5462	-0.79456	-0.00043802	0.33633	0.00018541	-0.45822	-0.00025261	551.280545983906	36.061	0.82882	36.099	35.855	36.684	0.038044	0.047286	-0.00044906	NaN	23.042	56	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2711100	+		45125	24607	31235	31286							-4.9542586793904775E-05
LNERYRLD	8	Unmodified	_LNERYRLD_					0	0	0		nc|ENSG00000137221|Q5JTD0-4|TJAP1;nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1	nc|ENSG00000137221|Q5JTD0-4|TJAP1	nc|ENSG00000137221|Q5JTD0-4|TJAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7673950195312	2	539.78563	1077.55671	-1.5049	-0.00081231	-1.4804	-0.00079912	-2.9853	-0.0016114	539.7845842709886	27.45	0.513	27.531	27.282	27.795	0.081291					30	13	3	0	0	0	0.027866	1	1434	1434		51.335	18.523	1	273340			45126	5103	31236	31287	50574	50574					0.02103073186435722
LNESKHQLN	9	Unmodified	_LNESKHQLN_					0	0	0		ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.8093872070312	2	541.783087	1081.55162	-1.6423	-0.00088979	2.3904	0.0012951	0.7481	0.00040531	541.7842737427508	29.015	0.59238	29.015	28.778	29.37	0					30	14	3	0	0	0	0.023635	1	1767	1767		66.429	0.6261	1	391940			45127	7185	31237	31288	50575	50575					0.014107693238202046
LNESKHQLN	9	Unmodified	_LNESKHQLN_					0	0	0		ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.8088989257812	2	541.783087	1081.55162	-1.1302	-0.00061234	2.2212	0.0012034	1.0909	0.00059105	541.7840423568974	28.993	0.56305	28.996	28.713	29.276	0.0031376					31	13	3	0	0	0	0.024021	1	1745	1745		32.812	0	1	407100			45128	7185	31237	31288	50576	50576					0.014107693238202046
LNETTPLYL	9	Unmodified	_LNETTPLYL_					0	0	0			REV__ENST00000521244.1_1_1:178511933-178514557:+|nuORF	REV__ENST00000521244.1_1_1:178511933-178514557:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2874145507812	2	532.28714	1062.55973	0.20847	0.00011097	-0.097131	-5.1702E-05	0.11134	5.9264E-05	532.2869816566283	77.258	0.75473	76.996	76.644	77.399	-0.26202					33	18	2	0	0	0	0.35646	1	9177	9177		68.787	0	1	787880	+		45129	31029	31238	31289	50577	50577					0.030949035205594555
LNETVTLTV	9	Unmodified	_LNETVTLTV_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20;nc|nan|Q8ND61-2|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2776794433594	2	495.279315	988.544076	0.59618	0.00029527	-4.0287	-0.0019954	-3.4326	-0.0017001	495.2773867944501	20.852	0.8856	20.656	20.336	21.221	-0.19577					29	17	2	0	0	0	0.4752	1	591	591		60.972	6.1956	1	1663300			45130	4516	31239	31290	50578	50578					0.049346170035164505
LNFARYDL	8	Unmodified	_LNFARYDL_					0	0	0		ENST00000469793.1_1_3:8988887-9005069:-|nuORF	ENST00000469793.1_1_3:8988887-9005069:-|nuORF	ENST00000469793.1_1_3:8988887-9005069:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.26446533203125	2	506.266542	1010.51853	-0.53408	-0.00027039	-3.7848	-0.0019161	-4.3189	-0.0021865	506.2645828030413	34.323	0.77408	34.323	34.011	34.785	0					57	19	4	0	0	0	0.42327	1	2552	2552		94.006	8.8456	1	1833100			45131	14916	31240	31291	50579	50579					0.01369187271757255
LNFEPVTHS	9	Unmodified	_LNFEPVTHS_					0	0	0			REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|2|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|10	REV__chr11:70403012-70405265|277|15.3|0.9|4.09|+|2|TE_info:L1MB7,L1MB7_dup14982,L1,LINE,donor,-,70402310,70403012|None,CTTN|10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.301513671875	2	522.261456	1042.50836	-0.0055086	-2.8769E-06	-3.5435	-0.0018507	-3.5491	-0.0018535	522.2599647058144	61.324	1.14	61.395	60.639	61.779	0.071129					63	29	3	0	0	0	0.024292	1	6910	6910		40.778	0	1	510440	+		45132	19355	31241	31292	50580	50580					-0.011194204534604069
LNFGQIITI	9	Unmodified	_LNFGQIITI_					0	0	0		nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3	nc|ENSG00000079215|P43003-2|SLC1A3	nc|ENSG00000079215|P43003-2|SLC1A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2738342285156	2	509.800217	1017.58588	-0.77016	-0.00039263	-1.17	-0.00059648	-1.9402	-0.00098911	509.7997123774864	90.794	0.66361	90.669	90.249	90.912	-0.12512					17	15	2	0	0	0	0.024436	1	11117	11117		30.504	19.638	1	115540			45133	1654	31242	31293	50581	50581					0.07779217482709555
LNFLDALRY	9	Unmodified	_LNFLDALRY_					0	0	0			REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.8062744140625	2	562.808574	1123.60259	-0.62133	-0.00034969	-3.0651	-0.0017251	-3.6865	-0.0020748	562.8067326724728	34.742	1.0191	34.555	34.241	35.26	-0.18675					57	25	4	0	0	0	0.87448	1	2568	2568		34.173	2.6427	1	1967500	+		45134	27840	31243	31294	50582	50582					0.04573718368669688
LNFLDALRY	9	Unmodified	_LNFLDALRY_					0	0	0			REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	REV__nc|ENSG00000186231|Q96NJ5-3|KLHL32	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.808574	1123.60259	-0.096372	-5.4239E-05	-3.3341	-0.0018765	-3.4305	-0.0019307	562.8065975056687	34.821	0.9087	34.605	34.307	35.216	-0.21555	0.037346	-9.6424E-05	NaN	34.173	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1845900	+		45135	27840	31243	31294							0.04573718368669688
LNFLRTSEL	9	Unmodified	_LNFLRTSEL_					0	0	0		ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	ENSG00000168301|ENST00000404589|KCTD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.286376953125	2	546.806031	1091.59751	0.06036	3.3005E-05	-1.4787	-0.00080857	-1.4184	-0.00077557	546.8054790310332	84.31	0.64876	84.172	83.758	84.406	-0.13789					38	14	4	0	0	0	0.023635	1	10185	10185		76.774	21.998	1	130140			45136	7809	31244	31295	50583	50583					0.05537414506034111
LNFMGCFNPNT	11	Carbamidomethyl (C),Oxidation (M)	_LNFM(Oxidation (M))GC(Carbamidomethyl (C))FNPNT_	LNFMGC(1)FNPNT	LNFM(1)GCFNPNT	LNFMGC(49)FNPNT	LNFM(49)GCFNPNT	0	1	1			REV__ENST00000482016.5_1_3:88106406-88107183:-|nuORF	REV__ENST00000482016.5_1_3:88106406-88107183:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.18865966796875	3	444.190007	1329.54819	-0.24747	-0.00010992	-3.2338	-0.0014364	-3.4812	-0.0015463	444.1887742329825	33.276	1.1308	33.076	32.771	33.902	-0.20019					86	28	5	0	0	0	0.94699	1	2369	2369		48.602	14.515	1	8870100	+		45137	33475	31245	31296	50584	50584	440	915			-0.10339984836696203
LNFMYIEVD	9	Unmodified	_LNFMYIEVD_					0	0	0		ENSG00000112739|ENST00000337659|PRPF4B;ENST00000466185.1_1_6:4057151-4059093:+|nuORF;ENST00000463634.6_1_6:4056876-4060847:+|nuORF	ENSG00000112739|ENST00000337659|PRPF4B	ENSG00000112739|ENST00000337659|PRPF4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	572.297119140625	2	572.273175	1142.5318	-1.0471	-0.00059924	3.6817	0.002107	2.6346	0.0015077	572.2739295677746	64.949	0.22663	64.986	64.891	65.117	0.037384					8	5	2	0	0	0	0.024477	1	7597	7597		44.117	17.424	1	143690			45138	3236	31246	31297	50585	50585					-0.03376742731165905
LNFNRLLY	8	Unmodified	_LNFNRLLY_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2680053710938	2	526.798009	1051.58147	0.1833	9.6563E-05	4.0021	0.0021083	4.1854	0.0022049	527.2991643620442	78.503	0.41547	78.311	78.176	78.591	-0.1921					17	9	3	0	0	0	0.027866	1	9667	9667		14.664	0	1	89064	+		45139	19998	31247	31298	50586	50586					0.05773753059816045
LNFNWKRLI	9	Unmodified	_LNFNWKRLI_					0	0	0		ENST00000337198.9_1_8:103845385-103846436:-|nuORF	ENST00000337198.9_1_8:103845385-103846436:-|nuORF	ENST00000337198.9_1_8:103845385-103846436:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.9034729003906	3	401.904747	1202.69241	0.24655	9.9088E-05	-3.4539	-0.0013881	-3.2073	-0.001289	401.90332922764964	30.709	0.74809	30.465	30.163	30.911	-0.24415					49	17	4	0	0	0	0.53979	1	1974	1974		56.721	7.2795	1	1900800			45140	12415	31248	31299	50587	50587					0.09917392767897582
LNFPCRPF	8	Unmodified	_LNFPCRPF_					0	0	0		ENST00000372179.7_1_9:135042013-135042139:+|nuORF	ENST00000372179.7_1_9:135042013-135042139:+|nuORF	ENST00000372179.7_1_9:135042013-135042139:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.8218688964844	2	497.25238	992.490207	0.087015	4.3269E-05	2.6487	0.0013171	2.7357	0.0013604	497.2536148993181	42.467	0.57384	42.493	42.323	42.897	0.026012					23	15	2	0	0	0	0.027866	1	3841	3841		35.201	13.241	1	351950			45141	13030	31249	31300	50588	50588					-0.006338339091712442
LNFQKRKT	8	Unmodified	_LNFQKRKT_					0	0	0		ENST00000524270.5_1_12:6981776-6982483:-|nuORF	ENST00000524270.5_1_12:6981776-6982483:-|nuORF	ENST00000524270.5_1_12:6981776-6982483:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.8092041015625	2	517.808908	1033.60326	-0.73098	-0.00037851	0.33756	0.00017479	-0.39342	-0.00020372	517.8089053448344	38.004	0.95093	37.782	37.466	38.417	-0.22148					60	26	4	0	0	0	0.95679	1	3096	3096		44.117	0	1	2407700			45142	16058	31250	31301	50589	50589					0.08780557808381673
LNFSHVLL	8	Unmodified	_LNFSHVLL_					0	0	0		ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.771728515625	2	471.774003	941.533452	-0.30123	-0.00014211	-4.1831	-0.0019735	-4.4843	-0.0021156	471.7718853747908	40.157	1.2378	40.18	39.873	41.111	0.023006					76	34	3	0	0	0	0.42327	1	3448	3448		94.006	22.711	1	14076000			45143	4300	31251	31302	50590	50590					0.0603467913977056
LNFSQSAH	8	Unmodified	_LNFSQSAH_					0	0	0		ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2424011230469	2	452.219591	902.42463	-0.23047	-0.00010422	1.56	0.00070547	1.3296	0.00060125	452.21999256440375	53.838	0.21836	53.691	53.493	53.711	-0.14723					11	5	3	0	0	0	0.027866	1	5792	5792		33.516	8.0654	1	272140			45144	8675	31252	31303	50591	50591					-0.030485318305181863
LNGADAAGVL	10	Unmodified	_LNGADAAGVL_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7792663574219	2	450.742899	899.471246	-0.24455	-0.00011023	0.28092	0.00012662	0.036377	1.6397E-05	450.74365638178847	31.127	0.93385	30.975	30.298	31.232	-0.15231					48	22	4	0	0	0	0.03519	1	1962	1962		107.01	16.231	1	388020	+		45145	26001	31253	31304	50592	50592					0.017489080007635494
LNGDSHISE	9	Unmodified	_LNGDSHISE_					0	0	0		nc|ENSG00000178662|Q8WYN3-2|CSRNP3;ENSG00000178662|ENST00000651982|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2124328613281	2	486.225071	970.435589	1.0539	0.00051243	4.0959	0.0019915	5.1498	0.002504	486.2264879901057	54.8	0.98016	54.593	54.197	55.177	-0.20613					81	26	5	0	0	0	0.024405	1	5862	5862		27.882	0	1	2675200			45146	8827	31254	31305	50593	50593					-0.05081174246902265
LNGFKTSKP	9	Unmodified	_LNGFKTSKP_					0	0	0		ENST00000489410.1_1_1:151867411-151867519:-|nuORF	ENST00000489410.1_1_1:151867411-151867519:-|nuORF	ENST00000489410.1_1_1:151867411-151867519:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2505187988281	2	496.282192	990.549831	-0.16709	-8.2923E-05	2.3853	0.0011838	2.2182	0.0011008	496.28331106446484	25.324	0.54455	25.153	24.869	25.413	-0.17078					19	12	2	0	0	0	0.024374	1	1168	1168		49.442	25.239	1	161180			45147	15408	31255	31306	50594	50594					0.05417760305851971
LNGHAQLL	8	Unmodified	_LNGHAQLL_					0	0	0			REV__ENSG00000188257|ENST00000482011|PLA2G2A	REV__ENSG00000188257|ENST00000482011|PLA2G2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.25860595703125	2	433.248152	864.481751	-0.80331	-0.00034803	1.9093	0.00082722	1.106	0.00047919	433.24878727432036	35.017	1.2657	34.995	34.751	36.017	-0.021763					45	33	2	0	0	0	0.027866	1	2739	2739		28.254	9.9299	1	191740	+		45148	28023	31256	31307	50595	50595					0.04408935445860607
LNGISRPL	8	Unmodified	_LNGISRPL_					0	0	0			REV__nc|ENSG00000148356|Q6UWE0-2|LRSAM1	REV__nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801513671875	2	435.263802	868.513051	-0.50156	-0.00021831	0.74941	0.00032619	0.24785	0.00010788	435.2640275797	39.125	0.53202	39.026	38.772	39.304	-0.098755					24	14	2	0	0	0	0.027866	1	3323	3323		56.721	5.3856	1	796710	+		45149	24610	31257	31308	50596	50596					0.07353508479945958
LNGKDAFIGF	10	Unmodified	_LNGKDAFIGF_					0	0	0		ENST00000450062.1_1_7:55832495-55840978:+|nuORF	ENST00000450062.1_1_7:55832495-55840978:+|nuORF	ENST00000450062.1_1_7:55832495-55840978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.3086547851562	2	541.287474	1080.5604	-0.4677	-0.00025316	-2.3857	-0.0012914	-2.8534	-0.0015445	541.2862072989525	42.8	0.43712	42.826	42.605	43.042	0.026012					19	11	2	0	0	0	0.03519	1	3924	3924		58.782	14.251	1	174480			45150	14507	31258	31309	50597	50597					0.023337429602634074
LNGKGERPK	9	Unmodified	_LNGKGERPK_					0	0	0			REV__ENST00000514606.1_1_4:139988805-140005344:-|nuORF	REV__ENST00000514606.1_1_4:139988805-140005344:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2716979980469	2	499.790715	997.566878	-1.0504	-0.00052497	1.0036	0.00050159	-0.046771	-2.3376E-05	499.79106345453914	22.09	0.58075	22.164	21.832	22.413	0.073954					20	11	2	0	0	0	0.024466	1	679	679		31.53	0	1	188440	+		45151	34178	31259	31310	50598	50598					0.06799680911649375
LNGKIALI	8	Unmodified	_LNGKIALI_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.2791442871094	2	421.278921	840.543289	0.045183	1.9035E-05	0.037837	1.594E-05	0.08302	3.4975E-05	421.278798480375	29.342	0.67195	29.193	28.912	29.584	-0.14952					31	15	3	0	0	0	0.75307	1	1765	1765		62.978	7.4742	1	636700	+		45152	27742	31260	31311	50599	50599					0.11663867145114182
LNGKIALI	8	Unmodified	_LNGKIALI_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	421.278921	840.543289	-0.87334	-0.00036792	1.2366	0.00052097	0.36329	0.00015305	421.2793124278852	29.407	0.55904	29.162	28.881	29.44	-0.24524	0.0022277	0.00054497	NaN	62.978	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631670	+		45153	27742	31260	31311							0.11663867145114182
LNGKIALI	8	Unmodified	_LNGKIALI_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	421.278921	840.543289	-0.41614	-0.00017531	0.80997	0.00034122	0.39383	0.00016591	421.27910745129185	29.297	0.59638	29.124	28.893	29.49	-0.17258	-0.035401	0.00018548	NaN	62.978	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610310	+		45154	27742	31260	31311							0.11663867145114182
LNGKIALI	8	Unmodified	_LNGKIALI_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	421.278921	840.543289	0.045183	1.9035E-05	0.037837	1.594E-05	0.08302	3.4975E-05	421.278798480375	29.342	0.67195	29.193	28.912	29.584	-0.14952	0.033173	-0.00046509	NaN	62.978	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636700	+		45155	27742	31260	31311							0.11663867145114182
LNGLALYVF	9	Unmodified	_LNGLALYVF_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.2919616699219	2	505.289485	1008.56442	0.44319	0.00022394	3.7684	0.0019041	4.2116	0.0021281	505.29098546991	96.087	1.6768	96.094	95.647	97.323	0.0065002					112	38	5	0	0	0	0.98128	1	12204	12204		24.203	1.1603	1	854940			45156	10387	31261	31312	50600	50600					0.06047832453987212
LNGLALYVF	9	Unmodified	_LNGLALYVF_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	505.289485	1008.56442	0.45051	0.00022764	3.707	0.0018731	4.1575	0.0021007	505.2912101133561	96.254	1.7011	96.117	95.767	97.468	-0.1367	-0.016207	-0.00020233	NaN	24.203	76	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931960			45157	10387	31261	31312							0.06047832453987212
LNGLALYVF	9	Unmodified	_LNGLALYVF_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.289485	1008.56442	0.68139	0.0003443	3.4956	0.0017663	4.177	0.0021106	505.2910276805995	96.215	1.6955	96.092	95.813	97.509	-0.12305	-0.041539	-0.00041598	NaN	24.203	74	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	800230			45158	10387	31261	31312							0.06047832453987212
LNGLALYVF	9	Unmodified	_LNGLALYVF_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	505.289485	1008.56442	-0.46098	-0.00023293	4.6114	0.0023301	4.1504	0.0020972	505.29155691644564	96.328	1.475	96.171	95.794	97.269	-0.15646	0.037854	0.00071169	NaN	24.203	67	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710750			45159	10387	31261	31312							0.06047832453987212
LNGLRAVSP	9	Unmodified	_LNGLRAVSP_					0	0	0		nc|ENSG00000102858|O60291|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1	nc|ENSG00000102858|O60291|MGRN1	nc|ENSG00000102858|O60291|MGRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7767639160156	2	463.774534	925.534515	-0.68728	-0.00031874	1.8815	0.00087258	1.1942	0.00055384	463.77454884767565	49.115	0.95898	49.19	48.772	49.731	0.074192					81	25	4	0	0	0	0.85329	1	5024	5024		35.618	2.8059	1	10178000			45160	2434	31262	31313	50601	50601					0.06876893508660942
LNGLRLQT	8	Unmodified	_LNGLRLQT_					0	0	0		ENST00000492299.1_1_1:50610640-50645245:+|nuORF;ELAVL4|p.S199Kfs*53|1|0.61|ENSG00000162374|chr1:50195646-50195647|-/A|frameshift_variant;nc|ENSG00000107105|Q12926-2|ELAVL2;ENSG00000107105|ENST00000397312|ELAVL2;nc|ENSG00000162374|P26378-4|ELAVL4;ENSG00000162374|ENST00000371824|ELAVL4;nc|ENSG00000162374|P26378-5|ELAVL4;nc|ENSG00000162374|P26378-1|ELAVL4;nc|ENSG00000162374|P26378-3|ELAVL4;nc|ENSG00000162374|P26378|ELAVL4	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	ENST00000492299.1_1_1:50610640-50645245:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.77801513671875	2	457.774534	913.534515	0.48246	0.00022086	-0.35102	-0.00016069	0.13144	6.0171E-05	457.7742744898474	42.709	0.65164	42.735	42.459	43.111	0.026012					27	17	2	0	0	0	0.027866	1	3931	3931		24.203	0	1	2787600			45161	698	31263	31314	50602	50602					0.07428893508654255
LNGMIKVF	8	Unmodified	_LNGMIKVF_					0	0	0			REV__ENSG00000105755|ENST00000292147|ETHE1	REV__ENSG00000105755|ENST00000292147|ETHE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.26434326171875	2	461.264956	920.515359	-0.49934	-0.00023033	0.69374	0.00032	0.19441	8.9673E-05	461.26500235510275	92.169	2.2071	92.169	91.641	93.848	0					96	52	3	0	0	0	1.0572	1	11688	11688		28.254	2.8041	1	1540400	+		45162	21563	31264	31315	50603	50603					0.051922208933888214
LNGMLCLTH	9	Unmodified	_LNGMLCLTH_					0	0	0			REV__nc|ENSG00000151148|Q7Z3V4-2|UBE3B	REV__nc|ENSG00000151148|Q7Z3V4-2|UBE3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2497253417969	2	501.24898	1000.48341	0.18901	9.4743E-05	-1.0803	-0.00054147	-0.89124	-0.00044673	501.24839527813253	104.99	0.62553	104.98	104.63	105.26	-0.0016022					49	20	3	0	0	0	0.72875	1	13420	13420		44.117	1.2525	1	337750	+		45163	24755	31265	31316	50604	50604					-0.016815148520777257
LNGNLIVK	8	Unmodified	_LNGNLIVK_					0	0	0			REV__nc|ENSG00000182346|P59103-4|DAOA	REV__nc|ENSG00000182346|P59103-4|DAOA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7800598144531	2	435.774003	869.533452	-0.49103	-0.00021398	1.5002	0.00065377	1.0092	0.00043979	435.77459743545734	40.692	0.18593	40.556	40.488	40.674	-0.13553					6	4	2	0	0	0	0.027866	1	3552	3552		37.159	30.424	1	30988	+		45164	36993	31266	31317	50605	50605					0.09346679139753178
LNGNVIGQELI	11	Unmodified	_LNGNVIGQELI_					0	0	0		ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	585.331298828125	2	585.32987	1168.64519	-0.052468	-3.0711E-05	3.4431	0.0020153	3.3906	0.0019846	585.3317228290413	82.144	1.5196	82.034	81.803	83.323	-0.11006					103	35	4	0	0	0	0.32544	1	10225	10225		87.696	0	1	1037700			45165	11140	31267	31318	50606	50606					0.06761068706259721
LNGNVIGQELI	11	Unmodified	_LNGNVIGQELI_					0	0	0		ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	585.32987	1168.64519	-1.5537	-0.00090945	4.9863	0.0029186	3.4325	0.0020092	585.332619554506	82.087	1.4359	82.087	81.83	83.266	0	0.14815	0.0012348	NaN	87.696	97	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897200			45166	11140	31267	31318							0.06761068706259721
LNGNVIGQELI	11	Unmodified	_LNGNVIGQELI_					0	0	0		ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	585.32987	1168.64519	0.19293	0.00011293	3.1992	0.0018726	3.3922	0.0019855	585.3316043010238	82.005	1.6412	82.031	81.7	83.341	0.025711	0.092221	-0.00085718	NaN	87.696	96	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950520			45167	11140	31267	31318							0.06761068706259721
LNGNVIGQELI	11	Unmodified	_LNGNVIGQELI_					0	0	0		ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.32987	1168.64519	0.16405	9.6022E-05	2.89	0.0016916	3.0541	0.0017876	585.3314235203441	82.027	0.60025	81.798	81.564	82.165	-0.2289	-0.14004	-0.0012192	NaN	87.696	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372570			45168	11140	31267	31318							0.06761068706259721
LNGNVIGQELI	11	Unmodified	_LNGNVIGQELI_					0	0	0		ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.32987	1168.64519	-0.60907	-0.00035651	3.9846	0.0023323	3.3756	0.0019758	585.3319693375472	82.008	0.85725	81.815	81.548	82.405	-0.19333	-0.12359	6.2248E-05	NaN	87.696	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414220			45169	11140	31267	31318							0.06761068706259721
LNGNVIGQELI	11	Unmodified	_LNGNVIGQELI_					0	0	0		ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	ENST00000209875.8_1_12:54633396-54633516:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.32987	1168.64519	-1.3081	-0.0007657	4.5436	0.0026595	3.2355	0.0018938	585.3323374106685	82.006	0.73112	81.866	81.528	82.26	-0.14014	-0.072494	0.00071661	NaN	87.696	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406850			45170	11140	31267	31318							0.06761068706259721
LNGPVAND	8	Unmodified	_LNGPVAND_					0	0	0		ENST00000577760.1_1_17:37009181-37009274:-|nuORF	ENST00000577760.1_1_17:37009181-37009274:-|nuORF	ENST00000577760.1_1_17:37009181-37009274:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.247314453125	2	400.200867	798.387182	0.073699	2.9494E-05	0.24452	9.7856E-05	0.31822	0.00012735	400.20087035891027	32.48	1.2679	32.492	31.742	33.01	0.011799					65	32	3	0	0	0	0.027866	1	2297	2297		15.642	0	1	794600			45171	17120	31268	31319	50607	50607					-0.020076230961535657
LNGQFKGR	8	Unmodified	_LNGQFKGR_					0	0	0		ENST00000492552.5_1_3:23987629-24018907:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.2685241699219	2	460.259051	918.503549	0.93079	0.0004284	3.7671	0.0017338	4.6979	0.0021622	460.260576751716	68.011	0.74244	67.756	67.367	68.109	-0.25516					34	17	3	0	0	0	0.027866	1	7788	7788		31.955	12.595	1	487980			45172	15483	31269	31320	50608	50608					0.041037401944208796
LNGQLPNL	8	Unmodified	_LNGQLPNL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000529638.1_1_8:145139098-145139832:+|nuORF;ENST00000527653.1_1_8:145139038-145139470:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.747802734375	2	434.747985	867.481417	-0.20708	-9.0027E-05	0.081859	3.5588E-05	-0.12522	-5.4439E-05	434.7481411347547	65.246	1.5339	65.246	64.69	66.224	0					145	41	5	0	0	0	0.50239	1	7809	7809		85.359	16.573	1	102340000			45173	10056	31270	31321	50609	50609					0.0423751572599258
LNGRVGGLEI	10	Unmodified	_LNGRVGGLEI_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.2982177734375	2	514.298373	1026.58219	0.092329	4.7485E-05	-0.28028	-0.00014415	-0.18795	-9.6661E-05	514.2981816905186	95.108	0.82266	95.112	94.651	95.474	0.0033722					47	18	5	0	0	0	1.0508	1	12059	12059		39.253	5.0803	1	1292300	+		45174	27972	31271	31322	50610	50610					0.0699654770885445
LNGTARRAL	9	Unmodified	_LNGTARRAL_					0	0	0			REV__nc|ENSG00000176783|Q96T51-3|RUFY1	REV__nc|ENSG00000176783|Q96T51-3|RUFY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2616882324219	2	486.290882	970.567212	-1.1449	-0.00055675	-3.8425	-0.0018686	-4.9874	-0.0024253	486.2890899849097	38.316	0.5457	38.316	38.134	38.68	0					17	14	2	0	0	0	0.024292	1	3209	3209		40.778	15.328	1	169050	+		45175	27046	31272	31323	50611	50611					0.08075100631504029
LNGVIKLL	8	Unmodified	_LNGVIKLL_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.780029296875	2	435.294571	868.574589	-0.36221	-0.00015767	0.031512	1.3717E-05	-0.33069	-0.00014395	435.29441579170634	46.076	0.45078	45.873	45.669	46.119	-0.20226					16	11	2	0	0	0	0.027866	1	4380	4380		38.806	0	1	220230	+		45176	24424	31273	31324	50612	50612					0.13504440179224275
LNGVLFIIY	9	Unmodified	_LNGVLFIIY_					0	0	0			REV__ENSG00000181009|ENST00000641181|OR52N5	REV__ENSG00000181009|ENST00000641181|OR52N5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2680053710938	2	526.312961	1050.61137	0.24248	0.00012762	1.8957	0.00099772	2.1382	0.0011253	526.3138182133529	78.582	0.37065	78.39	78.135	78.506	-0.1921					12	8	2	0	0	0	0.024517	1	9667	9667		12.959	0.75233	1	56465	+		45177	27379	31274	31325	50613	50613					0.08808692005140983
LNGVQKQII	9	Unmodified	_LNGVQKQII_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2953796386719	2	506.811116	1011.60768	0.25101	0.00012721	-0.55292	-0.00028023	-0.30192	-0.00015301	506.81072754146834	17.868	0.7751	17.726	17.368	18.143	-0.14278					25	15	2	0	0	0	0.024506	1	260	260		30.504	1.3541	1	290360			45178	4619	31275	31326	50614	50614					0.10234022231293238
LNGVYLTK	8	Unmodified	_LNGVYLTK_					0	0	0			REV__ENST00000496452.5_1_2:70456348-70475673:-|nuORF	REV__ENST00000496452.5_1_2:70456348-70475673:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.2369079589844	2	454.26601	906.517468	-0.88962	-0.00040413	0.45949	0.00020873	-0.43013	-0.00019539	454.2661259857384	43.703	0.44454	43.484	43.42	43.864	-0.21938					19	11	2	0	0	0	0.027866	1	4007	4007		35.618	0	1	380190	+		45179	22249	31276	31327	50615	50615					0.06046972902845482
LNHATPPIL	9	Unmodified	_LNHATPPIL_					0	0	0			REV__ENST00000525379.1_1_11:66985159-66986889:+|nuORF;REV__ENSG00000173120|ENST00000529006|KDM2A	REV__ENST00000525379.1_1_11:66985159-66986889:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2739562988281	2	488.284734	974.554916	-0.18212	-8.8927E-05	0.0033795	1.6501E-06	-0.17874	-8.7277E-05	488.2846422476265	52.572	0.73633	52.664	52.24	52.976	0.091938					40	18	3	0	0	0	0.024436	1	5584	5584		30.504	8.5438	1	1807700	+		45180	34414;26740	31277	31328	50616	50616					0.06662064168483539
LNHDITLLF	9	Unmodified	_LNHDITLLF_					0	0	0			REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.300537109375	2	543.303124	1084.5917	0.030618	1.6635E-05	-2.5474	-0.001384	-2.5168	-0.0013674	543.301548711995	74.545	0.39483	74.282	73.966	74.361	-0.26326					14	8	2	0	0	0	0.35646	1	8805	8805		68.787	7.8149	1	1388700	+		45181	21680	31278	31329	50617	50617					0.05278315994382865
LNHDSLFDPSH	11	Unmodified	_LNHDSLFDPSH_					0	0	0			REV__ENST00000595822.1_1_19:47492766-47503942:+|nuORF	REV__ENST00000595822.1_1_19:47492766-47503942:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.7846374511719	3	427.866798	1280.57856	-0.31653	-0.00013543	1.1569	0.00049498	0.84032	0.00035955	428.2030627503985	26.169	0.22803	25.933	25.72	25.948	-0.23603					8	5	2	0	0	0	0.024809	1	1306	1306		22.562	6.0317	1	67184	+		45182	35788	31279	31330	50618	50618					-0.050501668556762525
LNHFNNIN	8	Unmodified	_LNHFNNIN_					0	0	0			REV__ENST00000414273.1_1_1:567800-567992:+|nuORF	REV__ENST00000414273.1_1_1:567800-567992:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.81329345703125	2	493.246141	984.477728	-0.78411	-0.00038676	-0.60853	-0.00030016	-1.3926	-0.00068692	493.2457418134855	30.127	0.29569	29.883	29.696	29.991	-0.24415					14	6	3	0	0	0	0.027866	1	1892	1892		62.978	7.4742	1	59304	+		45183	32031	31280	31331	50619	50619					-0.015131540478705574
LNHLDQFAD	9	Unmodified	_LNHLDQFAD_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3058471679688	2	536.756538	1071.49852	-0.45666	-0.00024512	-1.2756	-0.00068466	-1.7322	-0.00092978	536.7557342335408	47.695	0.35745	47.508	47.355	47.712	-0.18684					17	9	2	0	0	0	0.024511	1	4702	4702		25.574	0	1	233630	+		45184	24384	31281	31332	50620	50620					-0.03436608458855517
LNHLLYAVG	9	Unmodified	_LNHLLYAVG_					0	0	0		KEAP1|p.R470H|1|0.41|ENSG00000079999|chr19:10489770-10489770|C/T|missense_variant	KEAP1|p.R470H|1|0.41|ENSG00000079999|chr19:10489770-10489770|C/T|missense_variant	KEAP1|p.R470H|1|0.41|ENSG00000079999|chr19:10489770-10489770|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.824462890625	2	500.284734	998.554916	0.09623	4.8142E-05	-3.6907	-0.0018464	-3.5945	-0.0017983	500.2825502089479	33.656	0.93413	33.712	33.245	34.179	0.056572					33	23	3	0	0	0	0.024386	1	2377	2377		33.516	26.322	1	297980			45185	17793	31282	31333	50621	50621					0.05558064168474175
LNHNEQAE	8	Unmodified	_LNHNEQAE_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77752685546875	2	477.717413	953.420273	-0.08107	-3.8728E-05	0.63832	0.00030494	0.55725	0.00026621	477.7189105514877	27.456	0.40255	27.443	27.205	27.608	-0.012983					16	10	3	0	0	0	0.027866	1	1501	1501		34.173	0	1	118880	+		45186	23732	31283	31334	50622	50622					-0.05830041044089285
LNHPRISIL	9	Unmodified	_LNHPRISIL_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53112313-53114116:+|nuORF;TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.80712890625	2	531.824558	1061.63456	0.3353	0.00017832	-2.917	-0.0015513	-2.5817	-0.001373	531.8230460782462	20.836	0.44256	20.905	20.661	21.103	0.068901					13	8	2	0	0	0	0.024541	1	528	528		23.042	17.121	1	14793			45187	9315	31284	31335	50623	50623					0.10621130842469029
LNHPRISIL	9	Unmodified	_LNHPRISIL_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53112313-53114116:+|nuORF;TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.824558	1061.63456	-1.5879	-0.00084447	-1.0382	-0.00055215	-2.6261	-0.0013966	531.8239545728076	20.875	0.29271	20.875	20.656	20.949	0	-0.013859	0.0012018	NaN	30.504	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17438			45188	9315	31284	31335							0.10621130842469029
LNHPRISIL	9	Unmodified	_LNHPRISIL_					0	0	0		ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53112313-53114116:+|nuORF;TSPYL2|p.P341Qfs*56|1|0.37|ENSG00000184205|chrX:53084975-53084975|C/-|frameshift_variant	ENSG00000184205|ENST00000375442|TSPYL2	ENSG00000184205|ENST00000375442|TSPYL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.824558	1061.63456	-0.79372	-0.00042212	-1.4974	-0.00079637	-2.2912	-0.0012185	531.8236868488061	20.977	0.2899	20.887	20.72	21.01	-0.090092	-0.0019677	0.00071333	NaN	30.504	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19421			45189	9315	31284	31335							0.10621130842469029
LNHPVTHVD	9	Unmodified	_LNHPVTHVD_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2822875976562	2	516.267073	1030.51959	-0.44444	-0.00022945	-0.27086	-0.00013983	-0.71529	-0.00036928	516.7689913913798	32.741	0.5743	32.804	32.465	33.039	0.062885					21	14	3	0	0	0	0.024405	1	2246	2246		35.618	16.258	1	42722			45190	9797	31285	31336	50624	50624					0.0055540164069043385
LNHPVTHVD	9	Unmodified	_LNHPVTHVD_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.267073	1030.51959	0.11122	5.7417E-05	-3.2781	-0.0016924	-3.1669	-0.001635	516.2641201503548	33.04	0.2472	32.84	32.69	32.937	-0.20019	0.018194	-0.0022035	NaN	25.574	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20811			45191	9797	31285	31336							0.0055540164069043385
LNHQVALIL	9	Unmodified	_LNHQVALIL_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2738037109375	2	510.813659	1019.61277	-0.10903	-5.5692E-05	-1.1892	-0.00060747	-1.2983	-0.00066316	510.8126961831043	90.431	0.87092	90.414	90.077	90.948	-0.016716					55	20	4	0	0	0	0.024466	1	11397	11397		33.516	11.813	1	1174000	+		45192	28893	31286	31337	50625	50625					0.10374326093915442
LNHTAEPS	8	Unmodified	_LNHTAEPS_					0	0	0		nc|ENSG00000136295|Q9C0H2-2|TTYH3;ENSG00000136295|ENST00000258796|TTYH3;nc|ENSG00000136295|Q9C0H2-4|TTYH3	nc|ENSG00000136295|Q9C0H2-2|TTYH3	nc|ENSG00000136295|Q9C0H2-2|TTYH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7798156738281	2	434.711599	867.408646	-0.79527	-0.00034571	-2.0229	-0.00087936	-2.8181	-0.0012251	434.7106183322245	39.884	0.33588	39.772	39.568	39.904	-0.11223					11	8	2	0	0	0	0.027866	1	3455	3455		38.806	13.232	1	106880			45193	5008	31287	31338	50626	50626					-0.03036238067420527
LNHTAEPS	8	Unmodified	_LNHTAEPS_					0	0	0		nc|ENSG00000136295|Q9C0H2-2|TTYH3;ENSG00000136295|ENST00000258796|TTYH3;nc|ENSG00000136295|Q9C0H2-4|TTYH3	nc|ENSG00000136295|Q9C0H2-2|TTYH3	nc|ENSG00000136295|Q9C0H2-2|TTYH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	434.711599	867.408646	-0.44231	-0.00019228	-1.1126	-0.00048367	-1.5549	-0.00067595	434.7111209432969	39.883	0.34776	39.907	39.741	40.089	0.023727	0.067333	0.00051784	NaN	38.806	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81380			45194	5008	31287	31338							-0.03036238067420527
LNHTKASI	8	Unmodified	_LNHTKASI_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2353210449219	2	442.253434	882.492316	-0.27375	-0.00012107	0.34739	0.00015363	0.073634	3.2565E-05	442.25342746492134	33.758	0.49609	33.758	33.554	34.05	0					22	12	2	0	0	0	0.027866	1	2507	2507		85.359	0	1	491020	+		45195	24784	31288	31339	50627	50627					0.046369181002773985
LNHTKASI	8	Unmodified	_LNHTKASI_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2355041503906	2	442.253434	882.492316	-0.19951	-8.8234E-05	0.41516	0.00018361	0.21565	9.5372E-05	442.2534834407096	33.622	0.71087	33.629	33.288	33.999	0.0066261					29	18	2	0	0	0	0.027866	1	2455	2455		79.451	0	1	583230	+		45196	24784	31288	31339	50628	50628					0.046369181002773985
LNHTKASI	8	Unmodified	_LNHTKASI_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.253434	882.492316	-0.36786	-0.00016269	0.78191	0.0003458	0.41405	0.00018311	442.2534325435688	33.916	0.38247	33.713	33.552	33.934	-0.20352	0.01743	3.2285E-05	NaN	85.359	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96688	+		45197	24784	31288	31339							0.046369181002773985
LNHTKASI	8	Unmodified	_LNHTKASI_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.253434	882.492316	-0.92217	-0.00040783	0.7958	0.00035195	-0.12637	-5.5886E-05	442.25381683186896	33.906	0.66101	33.73	33.507	34.168	-0.17557	0.034597	4.4571E-05	NaN	85.359	24	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89882	+		45198	24784	31288	31339							0.046369181002773985
LNHTKRVGF	9	Unmodified	_LNHTKRVGF_					0	0	0			REV__ENST00000530934.5_1_11:67160948-67163588:+|nuORF	REV__ENST00000530934.5_1_11:67160948-67163588:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3292846679688	2	536.306532	1070.59851	1.5062	0.0008078	1.7516	0.00093942	3.2579	0.0017472	536.3088116559173	19.102	0.34534	18.868	18.682	19.027	-0.23345					10	6	3	0	0	0	0.022924	1	351	351		53.351	0	1	57478	+		45199	26692	31289	31340	50629	50629					0.06603673665608767
LNHVDVLFS	9	Unmodified	_LNHVDVLFS_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF;ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7647094726562	2	522.279649	1042.54475	-0.61662	-0.00032205	3.5797	0.0018696	2.9631	0.0015476	522.2815656127091	36.565	1.0457	36.565	35.96	37.005	0					32	28	2	0	0	0	0.024374	1	2823	2823		40.778	7.9657	1	165750			45200	123	31290	31341	50630	50630					0.025174564432290936
LNHVDVLFS	9	Unmodified	_LNHVDVLFS_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF;ARHGAP32|p.E1284Qfs*8|1|0.08|ENSG00000134909|chr11:128972614-128972615|-/TTTG|frameshift_variant	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.279649	1042.54475	-0.58087	-0.00030338	4.767	0.0024897	4.1861	0.0021863	522.2820824141738	36.562	0.50342	36.519	36.383	36.887	-0.042458	-0.022939	0.00068933	NaN	40.778	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107620			45201	123	31290	31341							0.025174564432290936
LNHVTWKMITE	11	Unmodified	_LNHVTWKMITE_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000497940.5_1_1:3549956-3553597:-|nuORF;ENST00000469643.1_1_1:3549956-3551942:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.7372741699219	3	457.907829	1370.70166	-0.11031	-5.0514E-05	-0.57425	-0.00026295	-0.68456	-0.00031347	457.908111125618	21.634	0.53409	21.444	21.128	21.662	-0.19072					15	10	2	0	0	0	0.024816	1	661	661		16.53	0	1	25918			45202	3535	31291	31342	50631	50631					0.03113373271276032
LNHWQVEV	8	Unmodified	_LNHWQVEV_					0	0	0			REV__ENST00000490010.1_1_13:103249388-103260038:+|nuORF	REV__ENST00000490010.1_1_13:103249388-103260038:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.8038024902344	2	512.764166	1023.51378	-0.51469	-0.00026391	1.5786	0.00080946	1.0639	0.00054555	513.2668595116007	45.641	0.34596	45.685	45.546	45.892	0.043877					13	9	2	0	0	0	0.027866	1	4394	4394		18.324	0.95945	1	302580	+		45203	33690	31292	31343	50632	50632					0.0029630312900508216
LNIAVQGLF	9	Unmodified	_LNIAVQGLF_					0	0	0			REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.301025390625	2	487.78711	973.559667	-0.18998	-9.2671E-05	0.30986	0.00015115	0.11988	5.8474E-05	487.7871310022615	58.461	0.57386	58.277	58.053	58.627	-0.18467					19	13	2	0	0	0	0.024405	1	6393	6393		35.618	7.364	1	349570	+		45204	21672	31293	31344	50633	50633					0.07182948311242399
LNIEITIL	8	Unmodified	_LNIEITIL_					0	0	0			REV__COMT|p.P143L|1|0.21|ENSG00000093010|chr22:19963704-19963704|C/T|missense_variant	REV__COMT|p.P143L|1|0.21|ENSG00000093010|chr22:19963704-19963704|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.81298828125	2	464.789318	927.564084	-0.73073	-0.00033963	3.4822	0.0016185	2.7515	0.0012788	464.7909458654453	38.259	0.42698	38.038	37.99	38.417	-0.22149					17	11	2	0	0	0	0.027866	1	3142	3142		106.42	14.225	1	152920	+		45205	19518	31294	31345	50634	50634					0.09740412734140591
LNIFKIKW	8	Unmodified	_LNIFKIKW_					0	0	0			REV__nc|nan|Q5JPI3-2|C3orf38	REV__nc|nan|Q5JPI3-2|C3orf38	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2900390625	2	531.328945	1060.64334	-0.92467	-0.0004913	-2.5312	-0.0013449	-3.4558	-0.0018362	531.3293922187252	55.319	0.30081	55.173	55.022	55.322	-0.14609					10	8	2	0	0	0	0.027866	1	5908	5908		19.36	1.995	1	299370	+		45206	27227	31295	31346	50635	50635					0.11544104478934969
LNIFQGVI	8	Unmodified	_LNIFQGVI_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24261474609375	2	452.268553	902.522553	0.33224	0.00015026	-0.039615	-1.7917E-05	0.29263	0.00013235	452.2681735632644	53.684	0.46067	53.684	53.302	53.763	0					16	12	2	0	0	0	0.027866	1	5804	5804		50.025	18.07	1	220490			45207	2903	31296	31347	50636	50636					0.06739276765483737
LNIFQGVI	8	Unmodified	_LNIFQGVI_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.268553	902.522553	-0.61126	-0.00027645	5.0392	0.0022791	4.428	0.0020026	452.27076646919016	53.521	0.36038	53.374	53.132	53.493	-0.14723	-0.18628	0.00018116	NaN	40.573	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158160			45208	2903	31296	31347							0.06739276765483737
LNIFQGVI	8	Unmodified	_LNIFQGVI_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	452.268553	902.522553	-0.39077	-0.00017673	4.5814	0.002072	4.1907	0.0018953	452.2706073179732	53.323	0.28603	53.418	53.195	53.481	0.095669	-0.1418	-0.00023292	NaN	40.573	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119620			45209	2903	31296	31347							0.06739276765483737
LNIGMVEEV	9	Unmodified	_LNIGMVEEV_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;ENST00000475319.1_1_6:127611016-127636085:-|nuORF	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7916564941406	2	502.260068	1002.50558	-0.8893	-0.00044666	0.71592	0.00035958	-0.17337	-8.7079E-05	502.2596278630869	62.395	0.46035	62.217	61.923	62.383	-0.17781					15	11	2	0	0	0	0.02435	1	7028	7028		42.396	0	1	641600			45210	2005	31297	31348	50637	50637					0.004429880973589206
LNIHLTIN	8	Unmodified	_LNIHLTIN_					0	0	0		ADRBK1|p.M188I|1|0.26|ENSG00000173020|chr11:67281101-67281101|G/C|missense_variant	ADRBK1|p.M188I|1|0.26|ENSG00000173020|chr11:67281101-67281101|G/C|missense_variant	ADRBK1|p.M188I|1|0.26|ENSG00000173020|chr11:67281101-67281101|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.27679443359375	2	469.276909	936.539266	0.3163	0.00014843	-0.29858	-0.00014012	0.017717	8.3143E-06	469.27667076878555	50.037	1.0392	49.885	49.52	50.559	-0.1512					69	29	3	0	0	0	0.83003	1	5182	5182		56.721	0	1	4206100			45211	41	31298	31349	50638	50638					0.06845777651426488
LNIIISVP	8	Unmodified	_LNIIISVP_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7796936035156	2	434.778754	867.542954	-0.73732	-0.00032057	3.4626	0.0015055	2.7253	0.0011849	434.7801177790497	44.225	2.0022	43.98	42.832	44.835	-0.2444					165	53	4	0	0	0	1.0133	1	4038	4038		35.201	1.6851	1	3379000			45212	1550	31299	31350	50639	50639					0.10388447425282266
LNIKAPKV	8	Unmodified	_LNIKAPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2664489746094	2	441.792195	881.569838	-0.84804	-0.00037466	1.2356	0.00054586	0.38752	0.0001712	441.7926310075791	59.924	0.41164	60.003	59.791	60.203	0.078888					16	10	2	0	0	0	0.027866	1	6815	6815		60.294	26.778	1	164450			45213	4084	31300	31351	50640	50640					0.12431556036460734
LNILDQGTF	9	Unmodified	_LNILDQGTF_					0	0	0			REV__ENSG00000198964|ENST00000361781|SGMS1	REV__ENSG00000198964|ENST00000361781|SGMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2636413574219	2	510.771657	1019.52876	0.20931	0.00010691	1.8132	0.00092612	2.0225	0.001033	510.7715036292199	81.262	0.49549	81.033	80.816	81.312	-0.2289					13	11	2	0	0	0	0.024374	1	9725	9725		40.778	17.736	1	145540	+		45214	28532	31301	31352	50641	50641					0.019777502063334396
LNILSELIT	9	Unmodified	_LNILSELIT_					0	0	0		ENST00000315183.11_2_16:24836827-24836932:+|nuORF	ENST00000315183.11_2_16:24836827-24836932:+|nuORF	ENST00000315183.11_2_16:24836827-24836932:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2945251464844	2	508.305332	1014.59611	1.274	0.00064757	-1.1228	-0.00057073	0.15118	7.6847E-05	508.3048177878219	63.83	0.78934	63.83	63.522	64.311	0					47	21	4	0	0	0	0.024506	1	7441	7441		16.473	0.83134	1	1362300			45215	12131	31303	31353	50642	50642					0.08939780417290422
LNILVIIKT	9	Unmodified	_LNILVIIKT_					0	0	0		ENSG00000106034|ENST00000310396|CPED1	ENSG00000106034|ENST00000310396|CPED1	ENSG00000106034|ENST00000310396|CPED1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7842407226562	2	513.84971	1025.68487	-0.5646	-0.00029012	3.8395	0.0019729	3.2749	0.0016828	513.8498007889854	73.189	0.61738	73.199	72.901	73.519	0.0096512					32	15	3	0	0	0	0.024457	1	8831	8831		21.96	0	1	337570			45216	2752	31304	31354	50643	50643					0.17305240447626602
LNINQSTSHL	10	Unmodified	_LNINQSTSHL_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8404541015625	2	563.796195	1125.57784	-0.22088	-0.00012453	-3.7322	-0.0021042	-3.953	-0.0022287	563.7932598289107	57.991	0.35845	57.991	57.835	58.193	0					12	9	2	0	0	0	0.03519	1	6556	6556		51.193	17.677	1	247900	+		45217	21424	31305	31355	50644	50644					0.020070384952759923
LNINQSTSHL	10	Unmodified	_LNINQSTSHL_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.796195	1125.57784	0.081514	4.5957E-05	-3.3504	-0.001889	-3.2689	-0.001843	563.7940231116879	58.496	0.36447	58.312	58.098	58.463	-0.18414	0.16026	0.00014106	NaN	75.043	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251620	+		45218	21424	31305	31355							0.020070384952759923
LNIREMPL	8	Unmodified	_LNIREMPL_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3060302734375	2	493.278595	984.542637	0.045302	2.2347E-05	3.2013	0.0015791	3.2466	0.0016015	493.2798852777062	85.204	0.82994	85.009	84.385	85.215	-0.19508					32	19	3	0	0	0	0.027866	1	10321	10321		47.916	3.7988	1	85734	+		45219	28275	31306	31356	50645	50645					0.04974704433777788
LNISHVDQ	8	Unmodified	_LNISHVDQ_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.7373352050781	2	463.240524	924.466495	-0.24387	-0.00011297	-3.1762	-0.0014713	-3.4201	-0.0015843	463.2391028755738	73.107	0.67496	72.842	72.343	73.017	-0.26479					19	15	2	0	0	0	0.027866	1	8595	8595		37.812	12.237	1	171950	+		45220	20735	31307	31357	50646	50646					0.0012402385799532567
LNISNKISP	9	Unmodified	_LNISNKISP_					0	0	0			REV__ENSG00000134917|ENST00000257359|ADAMTS8	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7964172363281	2	493.287474	984.560395	-0.094936	-4.6831E-05	-0.53684	-0.00026482	-0.63178	-0.00031165	493.2870854788105	62.611	0.57323	62.674	62.367	62.94	0.062767					27	13	3	0	0	0	0.022882	1	7194	7194		65.465	12.529	1	1467100	+		45221	23497	31308	31358	50647	50647					0.06749742960278127
LNISNKISP	9	Unmodified	_LNISNKISP_					0	0	0			REV__ENSG00000134917|ENST00000257359|ADAMTS8	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.287474	984.560395	-0.58745	-0.00028978	-0.07136	-3.5201E-05	-0.65881	-0.00032498	493.287352556792	62.676	0.64099	62.676	62.297	62.938	0	-0.012846	2.2527E-05	NaN	65.465	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1494700	+		45222	23497	31308	31358							0.06749742960278127
LNISNKISP	9	Unmodified	_LNISNKISP_					0	0	0			REV__ENSG00000134917|ENST00000257359|ADAMTS8	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.287474	984.560395	-0.73079	-0.00036049	0.64728	0.00031929	-0.083507	-4.1193E-05	493.28741805411835	62.955	0.45507	62.716	62.492	62.947	-0.23926	0.027478	0.00073152	NaN	65.465	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1345300	+		45223	23497	31308	31358							0.06749742960278127
LNITVHIRDVC	11	Unmodified	_LNITVHIRDVC_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.7846984863281	3	428.236057	1281.68634	-0.27483	-0.00011769	0.32893	0.00014086	0.0541	2.3167E-05	428.236030018965	25.947	0.20977	25.71	25.593	25.803	-0.23603					6	4	2	0	0	0	0.024779	1	1294	1294		21.78	12.569	1	21964			45224	7098	31309	31359	50648	50648					0.05676506474060261
LNIVKKNV	8	Unmodified	_LNIVKKNV_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2802734375	2	464.302927	926.591301	0.83932	0.0003897	-0.91339	-0.00042409	-0.074072	-3.4392E-05	464.30239110718964	40.609	0.56808	40.488	40.304	40.872	-0.12075					27	15	2	0	0	0	0.027866	1	3615	3615		40.573	6.4001	1	587390	+		45225	20771	31310	31360	50649	50649					0.125069410651804
LNIVKKNV	8	Unmodified	_LNIVKKNV_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2804870605469	2	464.302927	926.591301	0.19144	8.8888E-05	-0.36025	-0.00016727	-0.16881	-7.8379E-05	464.30256031240174	40.691	0.47833	40.714	40.527	41.005	0.023006					27	13	3	0	0	0	0.027866	1	3558	3558		24.203	5.8783	1	622920	+		45226	20771	31310	31360	50650	50650					0.125069410651804
LNIVPVWQ	8	Unmodified	_LNIVPVWQ_					0	0	0			REV__nc|ENSG00000116717|P24522-2|GADD45A	REV__nc|ENSG00000116717|P24522-2|GADD45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2667541503906	2	484.781828	967.549102	-0.43778	-0.00021223	1.3113	0.00063568	0.87348	0.00042345	484.78211848548835	66.963	1.221	66.74	66.626	67.847	-0.22374					50	31	2	0	0	0	0.027866	1	7859	7859		17.365	0	1	733000	+		45227	22296	31311	31361	50651	50651					0.06402965656798187
LNIVQRSI	8	Unmodified	_LNIVQRSI_					0	0	0			REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7874755859375	2	471.790184	941.565815	0.73565	0.00034707	-0.44722	-0.000211	0.28842	0.00013607	471.78988313953323	55.841	1.2453	55.841	55.5	56.745	0					70	34	3	0	0	0	0.29644	1	6202	6202		113.41	3.2917	1	3889400	+		45228	35721	31312	31362	50652	50652					0.0926946654275298
LNIYVNLH	8	Unmodified	_LNIYVNLH_					0	0	0			REV__nc|ENSG00000139324|Q6ZXV5|TMTC3	REV__nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2937927246094	2	493.276909	984.539266	0.47043	0.00023205	-2.5189	-0.0012425	-2.0484	-0.0010104	493.275718427473	19.723	0.61292	19.723	19.366	19.979	0					22	12	2	0	0	0	0.027866	1	435	435		35.201	9.7505	1	42220	+		45229	23934	31313	31363	50653	50653					0.04637777651419128
LNKAKNLSL	9	Unmodified	_LNKAKNLSL_					0	0	0		ENST00000182527.3_1_6:52367444-52367987:-|nuORF	ENST00000182527.3_1_6:52367444-52367987:-|nuORF	ENST00000182527.3_1_6:52367444-52367987:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7867431640625	2	500.811116	999.60768	-0.18702	-9.366E-05	-3.0197	-0.0015123	-3.2067	-0.001606	500.8090192533378	54.801	0.14584	54.801	54.723	54.869	0					5	3	2	0	0	0	0.016258	1	6027	6027		104.75	27.972	1	31338			45230	11124	31314	31364	50654	50654					0.10786022231286552
LNKEKKITG	9	Unmodified	_LNKEKKITG_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2674560546875	2	515.816399	1029.61824	-0.74132	-0.00038238	1.1536	0.00059504	0.41228	0.00021266	515.8164027180584	31.171	0.20662	31.24	31.082	31.288	0.068962					5	4	2	0	0	0	0.024427	1	2015	2015		42.396	0	1	28828			45231	1201	31315	31365	50655	50655					0.10462004885698661
LNKEKSWIP	9	Unmodified	_LNKEKSWIP_					0	0	0			REV__ENST00000360204.5_1_19:20975441-20976669:+|nuORF	REV__ENST00000360204.5_1_19:20975441-20976669:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3505859375	2	557.816399	1113.61824	-0.26262	-0.00014649	-2.8705	-0.0016012	-3.1332	-0.0017477	557.8147880529333	50.273	0.46455	50.122	49.924	50.388	-0.1512					20	13	2	0	0	0	0.024436	1	5192	5192		38.806	7.2763	1	349060	+		45232	30899	31316	31366	50656	50656					0.06598004885699993
LNKEVEKQV	9	Unmodified	_LNKEVEKQV_					0	0	0			REV__nc|ENSG00000140379|Q16548-2|BCL2A1	REV__nc|ENSG00000140379|Q16548-2|BCL2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.810791015625	2	543.811313	1085.60807	-1.6367	-0.00089008	0.63912	0.00034756	-0.99763	-0.00054252	543.811625998734	44.239	1.0666	44.019	43.562	44.628	-0.21939					74	28	4	0	0	0	0.016542	1	4081	4081		154.12	0	1	9084800	+		45233	24008	31317	31367	50657	50657					0.06869397160471635
LNKGPFLL	8	Unmodified	_LNKGPFLL_					0	0	0		nc|ENSG00000196678|A8K979-4|ERI2	nc|ENSG00000196678|A8K979-4|ERI2	nc|ENSG00000196678|A8K979-4|ERI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.760986328125	2	451.278921	900.543289	-0.91877	-0.00041462	-2.9316	-0.001323	-3.8504	-0.0017376	451.2775804516798	39.037	0.50666	39.06	38.807	39.313	0.023727					18	13	2	0	0	0	0.027866	1	3286	3286		44.531	7.5026	1	338680			45234	18630	31318	31368	50658	50658					0.08903867145136246
LNKHAPIL	8	Unmodified	_LNKHAPIL_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.28216552734375	2	453.281995	904.549437	-1.1753	-0.00053275	0.94165	0.00042683	-0.23367	-0.00010592	453.28231701912966	49.159	1.4269	49.233	48.842	50.269	0.074196					102	39	4	0	0	0	0.75307	1	4985	4985		62.978	5.1671	1	7365600	+		45235	22614	31319	31369	50659	50659					0.09334385376666887
LNKIDKEV	8	Unmodified	_LNKIDKEV_					0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8001403808594	2	479.782025	957.549496	-0.036592	-1.7556E-05	1.892	0.00090774	1.8554	0.00089018	479.78306076191245	27.385	0.45991	27.228	27.018	27.477	-0.15664					17	10	3	0	0	0	0.027866	1	1468	1468		125.81	0	1	308930	+		45236	21711	31320	31370	50660	50660					0.06902340586009359
LNKIDVAGRF	10	Unmodified	_LNKIDVAGRF_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.8278198242188	2	566.827298	1131.64004	-0.89125	-0.00050518	0.45325	0.00025692	-0.43799	-0.00024827	566.8274553648066	52.89	2.2809	52.986	51.723	54.004	0.095669					149	61	4	0	0	0	0.77808	1	5606	5606		62.107	0.41614	1	3234400	+		45237	24384	31321	31371	50661	50661					0.0794880963428568
LNKIFRNTV	9	Unmodified	_LNKIFRNTV_					0	0	0			REV__nc|ENSG00000166073|Q14439-2|GPR176	REV__nc|ENSG00000166073|Q14439-2|GPR176	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8111572265625	2	552.82984	1103.64513	-1.1418	-0.00063123	-0.64876	-0.00035865	-1.7906	-0.00098989	552.8292250881711	51.421	0.91985	51.508	51.116	52.035	0.087009					56	25	3	0	0	0	0.024477	1	5344	5344		20.947	0	1	1070400	+		45238	36881	31322	31372	50662	50662					0.09745113496887825
LNKIGNRG	8	Unmodified	_LNKIGNRG_					0	0	0		ENST00000489691.1_1_X:54558969-54570464:+|nuORF	ENST00000489691.1_1_X:54558969-54570464:+|nuORF	ENST00000489691.1_1_X:54558969-54570464:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.81060791015625	2	436.259051	870.503549	-0.51284	-0.00022373	-3.8019	-0.0016586	-4.3147	-0.0018823	436.25892285225063	22.623	0.13776	22.437	22.369	22.507	-0.18539					4	2	2	0	0	0	0.027866	1	811	811		33.516	5.2613	1	8783.2			45239	15417	31323	31373	50663	50663					0.06311740194428239
LNKIRKIA	8	Unmodified	_LNKIRKIA_					0	0	0			REV__ENSG00000103599|ENST00000335894|IQCH	REV__ENSG00000103599|ENST00000335894|IQCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.3240051269531	2	478.324194	954.633835	-0.20515	-9.813E-05	0.0057441	2.7475E-06	-0.19941	-9.5383E-05	478.32404960235226	24.537	0.6041	24.362	24.129	24.733	-0.17484					31	13	3	0	0	0	0.91239	1	1086	1086		50.025	0	1	890450	+		45240	21400	31324	31374	50664	50664					0.15470336193413914
LNKITYRSV	9	Unmodified	_LNKITYRSV_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.3200073242188	2	547.321848	1092.62914	0.41302	0.00022605	-2.992	-0.0016376	-2.579	-0.0014115	547.3199778916679	19.083	0.44418	18.88	18.658	19.102	-0.20371					18	8	3	0	0	0	0.85329	1	377	377		35.618	1.4457	1	154640	+		45241	20251	31325	31375	50665	50665					0.08653407259998858
LNKITYRSV	9	Unmodified	_LNKITYRSV_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.321848	1092.62914	0.32165	0.00017604	-3.0948	-0.0016939	-2.7732	-0.0015178	547.3199299564617	19.021	0.49505	18.86	18.639	19.134	-0.16079	0.012483	0.000281	NaN	35.618	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145250	+		45242	20251	31325	31375							0.08653407259998858
LNKITYRSV	9	Unmodified	_LNKITYRSV_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	547.321848	1092.62914	0.41302	0.00022605	-2.992	-0.0016376	-2.579	-0.0014115	547.3199778916679	19.083	0.44418	18.88	18.658	19.102	-0.20371	0.031985	0.00039357	NaN	35.618	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154640	+		45243	20251	31325	31375							0.08653407259998858
LNKKIWIL	8	Unmodified	_LNKKIWIL_					0	0	0			REV__ENST00000470840.5_1_9:131140285-131152010:+|nuORF	REV__ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.3340454101562	2	514.33677	1026.65899	-1.4588	-0.00075033	-2.8809	-0.0014818	-4.3397	-0.0022321	514.3351356005475	49.568	0.85734	49.643	49.316	50.173	0.074196					60	23	4	0	0	0	0.61897	1	5052	5052		74.517	5.7298	1	2793200	+		45244	26109	31326	31376	50666	50666					0.14672390995997375
LNKLDVVM	8	Unmodified	_LNKLDVVM_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.253173828125	2	466.267696	930.520839	-0.9254	-0.00043148	1.5326	0.00071459	0.60718	0.00028311	466.2679899180742	26.574	0.26656	26.41	26.271	26.537	-0.16331					11	6	2	0	0	0	0.027866	1	1360	1360		26.796	7.4361	1	102820	+		45245	28219	31327	31377	50667	50667					0.05279899685217515
LNKLHHPE	8	Unmodified	_LNKLHHPE_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.8157043457031	2	494.272158	986.529764	-0.21435	-0.00010595	0.64554	0.00031907	0.43119	0.00021312	494.2717023871291	20.759	0.49085	20.591	20.197	20.688	-0.16774					14	9	2	0	0	0	0.027866	1	593	593		63.306	0	1	16324	+		45246	24273	31328	31378	50668	50668					0.035960093658900405
LNKLKKEKN	9	Unmodified	_LNKLKKEKN_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.3322143554688	2	557.850773	1113.68699	0.27135	0.00015137	-0.51786	-0.00028889	-0.24651	-0.00013752	557.8503990599222	58.943	0.68876	58.762	58.546	59.235	-0.18134					30	16	3	0	0	0	0.023417	1	6550	6550		79.451	10.664	1	672210	+		45247	28452	31329	31379	50669	50669					0.13469669185428756
LNKLKKEKN	9	Unmodified	_LNKLKKEKN_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.850773	1113.68699	0.73698	0.00041113	-1.0766	-0.0006006	-0.33965	-0.00018947	557.8499654872788	58.898	0.39341	58.898	58.714	59.108	0	0.00084891	-0.00049624	NaN	79.451	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131310	+		45248	28452	31329	31379							0.13469669185428756
LNKLKKEKN	9	Unmodified	_LNKLKKEKN_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.850773	1113.68699	1.5296	0.00085329	-1.7899	-0.00099847	-0.26025	-0.00014518	557.8495800111098	59.176	0.46408	58.989	58.721	59.186	-0.18705	0.091427	-0.001292	NaN	79.451	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175350	+		45249	28452	31329	31379							0.13469669185428756
LNKLKKEKN	9	Unmodified	_LNKLKKEKN_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.850773	1113.68699	0.60202	0.00033584	-0.97374	-0.0005432	-0.37173	-0.00020737	557.8501342633728	58.826	0.39707	58.912	58.666	59.063	0.085682	0.014818	-0.00038144	NaN	79.451	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156910	+		45250	28452	31329	31379							0.13469669185428756
LNKLSFTLD	9	Unmodified	_LNKLSFTLD_					0	0	0			REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.305419921875	2	525.795132	1049.57571	-0.196	-0.00010305	0.78866	0.00041467	0.59266	0.00031162	525.7954566309928	69.8	0.7578	69.812	69.313	70.071	0.012421					33	18	3	0	0	0	0.024319	1	8330	8330		31.53	0	1	387750	+		45251	25081	31330	31380	50670	50670					0.052906097574805244
LNKLVSRIA	9	Unmodified	_LNKLVSRIA_					0	0	0		ENSG00000101004|ENST00000278886|NINL;nc|ENSG00000101004|Q9Y2I6-2|NINL;ENST00000464285.5_1_20:25434089-25439234:-|nuORF	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.80078125	2	507.326934	1012.63931	-0.59559	-0.00030216	-0.11267	-5.7158E-05	-0.70826	-0.00035932	507.32700138911076	31.029	0.3632	30.844	30.66	31.023	-0.18503					13	8	2	0	0	0	0.023417	1	2010	2010		58.782	0	1	78454			45252	2275	31331	31381	50671	50671					0.13350014985235248
LNKMTLLD	8	Unmodified	_LNKMTLLD_					0	0	0			REV__ENST00000517342.1_1_8:57389817-57390279:-|nuORF	REV__ENST00000517342.1_1_8:57389817-57390279:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.3081970214844	2	474.265153	946.515753	1.4627	0.0006937	3.5816	0.0016986	5.0443	0.0023923	474.26674882346396	17.637	0.24928	17.483	17.358	17.607	-0.15403					7	4	2	0	0	0	0.027866	1	211	211		23.042	12.777	1	40623	+		45253	24986	31332	31382	50672	50672					0.040355958225973154
LNKNDLKIT	9	Unmodified	_LNKNDLKIT_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8289184570312	2	529.813856	1057.61316	0.11432	6.0567E-05	1.0982	0.00058185	1.2125	0.00064242	529.8141551943702	68.711	0.77924	68.48	68.316	69.095	-0.23048					32	18	2	0	0	0	0.024319	1	7922	7922		56.721	3.7844	1	185370			45254	9241	31333	31383	50673	50673					0.0866570102307378
LNKNERKLT	9	Unmodified	_LNKNERKLT_					0	0	0			REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000109061|ENST00000226207|MYH1;REV__nc|ENSG00000078814|A7E2Y1|MYH7B	REV__ENSG00000125414|ENST00000245503|MYH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.3322143554688	2	558.330205	1114.64586	0.46282	0.00025841	2.9706	0.0016586	3.4334	0.001917	558.3317503544573	59.292	0.9045	59.11	58.831	59.736	-0.18134					61	22	4	0	0	0	0.16468	1	6550	6550		96.19	8.4361	1	5394800	+		45255	22814;21775;20622	31334	31384	50674	50674					0.09311908145923553
LNKNGGPRN	9	Unmodified	_LNKNGGPRN_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2668151855469	2	485.264865	968.515176	0.35623	0.00017287	2.5262	0.0012259	2.8825	0.0013988	485.2660207751723	68.172	1.0412	67.938	67.555	68.596	-0.23376					54	25	3	0	0	0	0.80658	1	7896	7896		38.806	0.99462	1	4444000			45256	662	31335	31385	50675	50675					0.02965937217766168
LNKNKYLT	8	Unmodified	_LNKNKYLT_					0	0	0		nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR;nc|ENSG00000165409|P16473-2|TSHR;nc|ENSG00000165409|P16473-3|TSHR	nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.3072204589844	2	497.290017	992.565481	-0.65301	-0.00032474	-0.38276	-0.00019034	-1.0358	-0.00051508	497.29172894302764	22.017	0.19057	21.815	21.712	21.903	-0.20198					5	3	2	0	0	0	0.027866	1	724	724		55.504	0	1	8112.8			45257	7411	31336	31386	50676	50676					0.06890046822900331
LNKNTLKTSA	10	Unmodified	_LNKNTLKTSA_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167724609375	2	545.316763	1088.61897	-0.6354	-0.0003465	0.4679	0.00025515	-0.1675	-9.1343E-05	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0992	1	11140	11140		32.812	0	1	11705000			45258	3130	31337	31387	50677	50677					0.07820799534783873
LNKRRGFVFIT	11	Unmodified	_LNKRRGFVFIT_					0	0	0		nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	nc|ENSG00000197451|Q99729-3|HNRNPAB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7610778808594	3	450.93834	1349.79319	-0.19796	-8.927E-05	4.1908	0.0018898	3.9928	0.0018005	451.27429873555616	38.819	0.42632	38.819	38.721	39.148	0					15	11	2	0	0	0	0.024809	1	3319	3319		22.562	13.762	1	619020			45259	10001	31338	31388	50678	50678					0.13228424750741397
LNKRVCIVK	9	Unmodified	_LNKRVCIVK_					0	0	0			REV__LRRC4C|p.R68G|1|0.29|ENSG00000148948|chr11:40116091-40116091|G/C|missense_variant	REV__LRRC4C|p.R68G|1|0.29|ENSG00000148948|chr11:40116091-40116091|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2950439453125	2	536.836611	1071.65867	-1.0896	-0.00058494	0.26357	0.00014149	-0.82603	-0.00044344	536.8366949691663	56.713	0.47151	56.548	56.239	56.71	-0.16431					18	12	2	0	0	0	0.024457	1	6278	6278		21.96	5.4867	1	221420	+		45260	24647	31339	31389	50679	50679					0.12570648004498253
LNKSRQFNL	9	Unmodified	_LNKSRQFNL_					0	0	0		IRF6|p.E92Q|1|0.33|ENSG00000117595|chr1:209796453-209796453|C/G|missense_variant	IRF6|p.E92Q|1|0.33|ENSG00000117595|chr1:209796453-209796453|C/G|missense_variant	IRF6|p.E92Q|1|0.33|ENSG00000117595|chr1:209796453-209796453|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7850341796875	2	560.317097	1118.61964	-0.32738	-0.00018344	-0.89974	-0.00050414	-1.2271	-0.00068758	560.3167265529515	67.76	0.25991	67.522	67.289	67.549	-0.23814					6	5	2	0	0	0	0.024466	1	7800	7800		39.253	8.7492	1	380800			45261	17774	31340	31390	50680	50680					0.06507638974471774
LNKTQNKLL	9	Unmodified	_LNKTQNKLL_					0	0	0			REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.329673	1070.64479	0.17227	9.2391E-05	-0.95495	-0.00051217	-0.78268	-0.00041978	536.3292010298713	19.084	1.4717	18.881	18.609	20.08	-0.20371					83	29	6	0	0	0	0.19099	1	381	381		90.37	0	1	7254100	+		45262	24491	31341	31391	50681	50681					0.11229693777045213
LNKTQNKLL	9	Unmodified	_LNKTQNKLL_					0	0	0			REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	REV__TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3292846679688	2	536.329673	1070.64479	1.5633	0.00083843	-2.3342	-0.0012519	-0.77095	-0.00041348	536.3284676516844	19.038	1.3354	18.805	18.533	19.868	-0.23345					74	26	5	0	0	0	0.091713	1	351	351		113.41	1.7633	1	7075300	+		45263	24491	31341	31391	50682	50682					0.11229693777045213
LNKTRYNN	8	Unmodified	_LNKTRYNN_					0	0	0		ENSG00000117971|ENST00000261751|CHRNB4;ENST00000560511.5_1_15:78923416-78927882:-|nuORF;nc|ENSG00000117971|P30926-2|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7893981933594	2	511.772522	1021.53049	-0.56168	-0.00028745	2.4657	0.0012619	1.904	0.00097443	511.7734597859945	82.684	0.56423	82.543	82.173	82.737	-0.14014					21	12	3	0	0	0	0.027866	1	9909	9909		37.159	10.363	1	227730			45264	3664	31342	31392	50683	50683					0.020588040149391418
LNKVLIFETI	10	Unmodified	_LNKVLIFETI_					0	0	0			REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.8242797851562	2	595.363182	1188.71181	-0.02134	-1.2705E-05	0.4581	0.00027273	0.43676	0.00026003	595.3635711917061	77.104	0.28836	76.836	76.638	76.927	-0.26806					13	6	3	0	0	0	0.03519	1	9130	9130		54.776	0	1	214180	+		45265	35714	31343	31393	50684	50684					0.1250030426815556
LNKVVQKV	8	Unmodified	_LNKVVQKV_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2821044921875	2	464.302927	926.591301	-0.68155	-0.00031644	-0.048916	-2.2712E-05	-0.73046	-0.00033916	464.302765947605	69.36	0.25092	69.092	68.87	69.121	-0.26724					8	5	2	0	0	0	0.027866	1	8028	8028		52.299	11.727	1	94238	+		45266	20711	31344	31394	50685	50685					0.12506941065191768
LNKYTSYKL	9	Unmodified	_LNKYTSYKL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.31640625	2	565.316232	1128.61791	-0.55768	-0.00031526	0.55502	0.00031376	-0.0026517	-1.499E-06	565.3164309945279	95.114	1.291	95.114	94.573	95.864	0					78	29	4	0	0	0	0.45795	1	12099	12099		62.107	0.41614	1	2251100	+		45267	21027	31345	31395	50686	50686					0.0587458516586139
LNKYTSYKL	9	Unmodified	_LNKYTSYKL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.3161010742188	2	565.316232	1128.61791	-0.51773	-0.00029268	0.53745	0.00030383	0.019719	1.1147E-05	565.3164586892149	95.11	1.3372	95.114	94.617	95.955	0.0041199					77	30	4	0	0	0	0.19099	2	12035	12023;12035		90.37	2.2498	1	2113100	+		45268	21027	31345	31395	50687;50688	50688					0.0587458516586139
LNKYTSYKL	9	Unmodified	_LNKYTSYKL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.316232	1128.61791	-0.34422	-0.00019459	0.45281	0.00025598	0.10859	6.1389E-05	565.3162543765272	95.006	0.47331	94.869	94.595	95.068	-0.13698	-0.12265	5.8825E-05	NaN	90.37	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169910	+		45269	21027	31345	31395							0.0587458516586139
LNKYTSYKL	9	Unmodified	_LNKYTSYKL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	565.316232	1128.61791	0.55663	0.00031467	-0.8571	-0.00048453	-0.30048	-0.00016986	565.3156358431147	95.043	0.47538	94.92	94.684	95.16	-0.12251	-0.070947	-0.0014222	NaN	90.37	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190830	+		45270	21027	31345	31395							0.0587458516586139
LNKYTSYKL	9	Unmodified	_LNKYTSYKL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	565.316232	1128.61791	-0.30888	-0.00017461	0.25512	0.00014422	-0.053756	-3.0389E-05	565.31617728826	95.08	0.56229	94.928	94.667	95.23	-0.15186	-0.06329	-0.00016469	NaN	90.37	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140830	+		45271	21027	31345	31395							0.0587458516586139
LNLAGTDTALD	11	Unmodified	_LNLAGTDTALD_					0	0	0		ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.3011474609375	2	552.282586	1102.55062	-0.69277	-0.0003826	-1.4153	-0.00078163	-2.108	-0.0011642	552.2815646374219	54.448	0.54404	54.448	54.179	54.723	0					21	15	2	0	0	0	0.024771	1	5914	5914		51.193	8.3284	1	126310			45272	6766	31346	31396	50689	50689					0.00344510164222811
LNLAIKPYL	9	Unmodified	_LNLAIKPYL_					0	0	0		ENSG00000183395|ENST00000329406|PMCH	ENSG00000183395|ENST00000329406|PMCH	ENSG00000183395|ENST00000329406|PMCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3104248046875	2	522.826235	1043.63792	-2.0224	-0.0010574	1.9821	0.0010363	-0.040315	-2.1078E-05	522.8277402774563	60.383	0.3292	60.462	60.318	60.647	0.078884					12	8	2	0	0	0	0.024466	1	6887	6887		33.516	5.2613	1	74452			45273	9224	31347	31397	50690	50690					0.11784380896460789
LNLAQNLL	8	Unmodified	_LNLAQNLL_					0	0	0		CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant;ENSG00000178772|ENST00000323830|CPN2	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7591247558594	2	449.77146	897.528367	-0.11426	-5.1392E-05	0.30416	0.0001368	0.1899	8.5412E-05	449.77139320972543	45.128	0.85681	45.172	44.79	45.647	0.04388					37	24	2	0	0	0	0.027866	1	4242	4242		79.939	22.128	1	1141800			45274	581	31348	31398	50691	50691					0.07550375277151034
LNLAQNLL	8	Unmodified	_LNLAQNLL_					0	0	0		CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant;ENSG00000178772|ENST00000323830|CPN2	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.75921630859375	2	449.77146	897.528367	-0.18897	-8.4995E-05	-3.6594	-0.0016459	-3.8483	-0.0017309	449.76983735827145	44.651	0.13697	44.688	44.612	44.749	0.0369					5	3	2	0	0	0	0.027866	1	4228	4228		79.939	11.455	1	97612			45275	581	31348	31398	50692	50692					0.07550375277151034
LNLAQNLL	8	Unmodified	_LNLAQNLL_					0	0	0		CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant;ENSG00000178772|ENST00000323830|CPN2	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.77146	897.528367	-0.20119	-9.0489E-05	0.48554	0.00021838	0.28435	0.00012789	449.7714073006774	45.19	0.61527	45.19	44.898	45.514	0	0.015463	-2.8845E-05	NaN	79.939	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176000			45276	581	31348	31398							0.07550375277151034
LNLAQNLL	8	Unmodified	_LNLAQNLL_					0	0	0		CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant;ENSG00000178772|ENST00000323830|CPN2	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	449.77146	897.528367	-0.37918	-0.00017054	0.7708	0.00034668	0.39162	0.00017614	449.7715597121674	45.311	0.64958	45.162	44.866	45.515	-0.1488	-0.012768	0.00022776	NaN	79.939	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1189700			45277	581	31348	31398							0.07550375277151034
LNLCLILLL	9	Unmodified	_LNLCLILLL_					0	0	0		ENST00000390006.8_1_17:80426676-80426727:+|nuORF	ENST00000390006.8_1_17:80426676-80426727:+|nuORF	ENST00000390006.8_1_17:80426676-80426727:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.334228515625	2	514.332839	1026.65112	-0.016649	-8.5629E-06	3.3046	0.0016997	3.2879	0.0016911	514.334412503085	49.839	0.83035	49.688	49.33	50.16	-0.1512					57	22	4	0	0	0	0.15889	2	5140	5140;5151		97.473	2.33	1	3426400			45278	13385	31349	31399	50693;50694	50693					0.13886495684209876
LNLCLILLL	9	Unmodified	_LNLCLILLL_					0	0	0		ENST00000390006.8_1_17:80426676-80426727:+|nuORF	ENST00000390006.8_1_17:80426676-80426727:+|nuORF	ENST00000390006.8_1_17:80426676-80426727:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	514.332839	1026.65112	-0.069578	-3.5786E-05	3.4392	0.0017689	3.3696	0.0017331	514.3344565730753	49.638	0.91785	49.638	49.324	50.242	0	-0.018324	-0.00039173	NaN	97.473	60	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3245100			45279	13385	31349	31399							0.13886495684209876
LNLEELEIV	9	Unmodified	_LNLEELEIV_					0	0	0			REV__nc|ENSG00000184220|Q9BQ75-2|CMSS1	REV__nc|ENSG00000184220|Q9BQ75-2|CMSS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2958374023438	2	536.300247	1070.58594	-0.81002	-0.00043441	-2.642	-0.0014169	-3.4521	-0.0018513	536.2985380303594	74.644	2.1297	74.654	74.439	76.568	0.0096512					100	54	2	0	0	0	0.19099	1	9075	9075		90.37	1.7269	1	2543300	+		45280	27648	31350	31400	50695	50695					0.05347172692040658
LNLEPVPS	8	Unmodified	_LNLEPVPS_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7801208496094	2	434.742368	867.470183	-0.56193	-0.00024429	3.6539	0.0015885	3.0919	0.0013442	434.743946138967	37.902	0.60418	37.683	37.384	37.988	-0.21848					21	16	2	0	0	0	0.027866	1	3096	3096		38.806	1.647	1	188210			45281	4960	31351	31401	50696	50696					0.0311469363185779
LNLFCEEQV	9	Unmodified	_LNLFCEEQV_					0	0	0			REV__ENSG00000083123|ENST00000320393|BCKDHB	REV__ENSG00000083123|ENST00000320393|BCKDHB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.8184814453125	2	547.762975	1093.5114	0.047424	2.5977E-05	2.6712	0.0014632	2.7186	0.0014891	547.764736105866	64.211	0.5174	64.257	64.046	64.563	0.045502					20	13	2	0	0	0	0.024381	1	7517	7517		37.159	0	1	155810	+		45282	20708	31352	31402	50697	50697					-0.031619133909771335
LNLFSLDPD	9	Unmodified	_LNLFSLDPD_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10;DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant;nc|ENSG00000135905|Q96BY6-2|DOCK10;ENST00000492369.5_1_2:225727286-225907091:-|nuORF	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7813110351562	2	517.263665	1032.51278	-0.064728	-3.3481E-05	3.1961	0.0016532	3.1314	0.0016198	517.765137627044	42.099	0.16702	42.099	41.987	42.154	0					6	4	2	0	0	0	0.024457	1	3838	3838		29.15	0	1	28968			45283	4946	31353	31403	50698	50698					-0.00217956030564892
LNLFVGVII	9	Unmodified	_LNLFVGVII_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2893981933594	2	494.315503	986.616454	0.2703	0.00013362	2.5241	0.0012477	2.7944	0.0013813	494.316647180067	61.271	0.53881	61.342	61.167	61.706	0.071125					30	13	3	0	0	0	0.024386	1	6983	6983		42.474	8.9589	1	444560			45284	9427	31354	31404	50699	50699					0.12260995867757174
LNLGHNPI	8	Unmodified	_LNLGHNPI_					0	0	0		ENST00000422370.2_1_19:45647868-45648611:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37	ENST00000422370.2_1_19:45647868-45648611:+|nuORF	ENST00000422370.2_1_19:45647868-45648611:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.7564697265625	2	439.248152	876.481751	0.33836	0.00014863	1.1904	0.00052288	1.5288	0.0006715	439.248468408372	40.981	0.5276	40.981	40.764	41.292	0					33	14	3	0	0	0	0.027866	1	3651	3651		83.287	11.909	1	511050			45285	2610	31355	31405	50700	50700					0.03856935445844556
LNLGHNPI	8	Unmodified	_LNLGHNPI_					0	0	0		ENST00000422370.2_1_19:45647868-45648611:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37	ENST00000422370.2_1_19:45647868-45648611:+|nuORF	ENST00000422370.2_1_19:45647868-45648611:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.75653076171875	2	439.248152	876.481751	0.54172	0.00023795	0.52225	0.0002294	1.064	0.00046735	439.2482898118334	41.139	0.70225	41.016	40.762	41.464	-0.12317					31	19	2	0	0	0	0.027866	1	3664	3664		96.048	33.069	1	456600			45286	2610	31355	31405	50701	50701					0.03856935445844556
LNLGHNPI	8	Unmodified	_LNLGHNPI_					0	0	0		ENST00000422370.2_1_19:45647868-45648611:+|nuORF;ENSG00000104866|ENST00000221462|PPP1R37	ENST00000422370.2_1_19:45647868-45648611:+|nuORF	ENST00000422370.2_1_19:45647868-45648611:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7566833496094	2	439.248152	876.481751	0.21912	9.6246E-05	0.783	0.00034393	1.0021	0.00044018	439.24843827697555	41.154	0.52951	41.177	40.934	41.464	0.023006					32	14	3	0	0	0	0.027866	1	3619	3619		83.287	30.988	1	477780			45287	2610	31355	31405	50702	50702					0.03856935445844556
LNLIAQGK	8	Unmodified	_LNLIAQGK_					0	0	0		ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22311488-22316996:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENST00000444502.5_1_22:22313806-22324763:-|nuORF	ENSG00000100038|ENST00000357179|TOP3B	ENSG00000100038|ENST00000357179|TOP3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.74853515625	2	428.766178	855.517802	-0.80707	-0.00034604	0.050825	2.1792E-05	-0.75624	-0.00032425	428.76625062720035	25.663	0.55623	25.663	25.445	26.001	0					16	12	2	0	0	0	0.027866	1	1209	1209		23.042	0	1	50911			45288	2123	31356	31406	50703	50703					0.084263926227095
LNLIFYNQ	8	Unmodified	_LNLIFYNQ_					0	0	0		ENST00000536093.5_3_12:27475116-27475341:+|nuORF	ENST00000536093.5_3_12:27475116-27475341:+|nuORF	ENST00000536093.5_3_12:27475116-27475341:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7509765625	2	512.776742	1023.53893	0.13633	6.9909E-05	-0.021424	-1.0986E-05	0.11491	5.8923E-05	512.7761908870098	69.307	0.20717	69.064	68.915	69.123	-0.24336					6	4	2	0	0	0	0.027866	1	8037	8037		12.207	0	1	41978			45289	16358	31357	31407	50704	50704					0.028103579315711613
LNLINKLKNDD	11	Unmodified	_LNLINKLKNDD_					0	0	0		ENST00000515074.1_1_4:163244087-163244557:+|nuORF	ENST00000515074.1_1_4:163244087-163244557:+|nuORF	ENST00000515074.1_1_4:163244087-163244557:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.91278076171875	3	433.913748	1298.71942	-0.26593	-0.00011539	-1.9057	-0.0008269	-2.1716	-0.00094228	433.9129246882194	21.127	1.3876	21.036	20.439	21.826	-0.090094					76	28	5	0	0	0	1.0341	1	602	602		29.245	1.1635	1	1169200			45290	15894	31358	31408	50705	50705					0.0820041179774762
LNLKKKTD	8	Unmodified	_LNLKKKTD_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197139871-197142331|461|11.21|0.54|4.37|-|2|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2977600097656	2	480.297842	958.581131	0.54178	0.00026022	-0.72138	-0.00034648	-0.1796	-8.6261E-05	480.29742495686094	19.281	0.59593	19.081	18.859	19.455	-0.2001					35	11	5	0	0	0	0.42327	1	399	399		94.006	0	1	1077000			45291	1335	31359	31409	50706	50706					0.1001833333994
LNLKKLLS	8	Unmodified	_LNLKKLLS_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.81298828125	2	464.813128	927.611703	-0.41563	-0.00019319	0.047262	2.1968E-05	-0.36837	-0.00017122	464.8131556107188	38.039	2.2723	37.86	37.557	39.829	-0.17929					147	62	5	0	0	0	0.21344	3	3113	3101;3113;3125		138.24	12.848	1	31508000			45292	2478	31360	31410	50707;50708;50709	50708					0.1450011172498762
LNLKKLLS	8	Unmodified	_LNLKKLLS_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.812744140625	2	464.813128	927.611703	-0.78326	-0.00036407	0.2922	0.00013582	-0.49106	-0.00022825	464.81328090009987	38.134	2.684	37.913	37.542	40.226	-0.22149					161	72	5	0	0	0	0.10945	2	3156	3106;3156		157.99	9.3811	1	33345000			45293	2478	31360	31410	50710;50711	50711					0.1450011172498762
LNLKKLLS	8	Unmodified	_LNLKKLLS_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.81292724609375	2	464.813128	927.611703	-0.79928	-0.00037152	0.30544	0.00014197	-0.49384	-0.00022954	464.81324776637933	38.129	2.5229	37.91	37.535	40.058	-0.21848					155	68	5	0	0	0	0.24207	1	3106	3106		133.47	12.848	1	31027000			45294	2478	31360	31410	50712	50712					0.1450011172498762
LNLLDEVI	8	Unmodified	_LNLLDEVI_					0	0	0			REV__nc|ENSG00000167604|Q8NI38|NFKBID	REV__nc|ENSG00000167604|Q8NI38|NFKBID	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.8125915527344	2	464.771126	927.527698	-0.82226	-0.00038216	0.06551	3.0447E-05	-0.75675	-0.00035171	464.7698275670811	38.135	0.35094	37.914	37.577	37.928	-0.22149					14	9	2	0	0	0	0.027866	1	3118	3118		119.56	0	1	72513	+		45295	26161	31361	31411	50713	50713					0.061035358374169846
LNLLGILL	8	Unmodified	_LNLLGILL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7718505859375	2	434.796946	867.57934	-0.48701	-0.00021175	4.14	0.0018001	3.653	0.0015883	434.7990908424839	25.505	0.36697	25.505	25.285	25.652	0					12	8	2	0	0	0	0.027866	1	1223	1223		19.36	0	1	78265			45296	6575	31362	31412	50714	50714					0.14025324322005872
LNLLQVFM	8	Unmodified	_LNLLQVFM_					0	0	0		ENST00000262225.7_1_12:124082408-124082543:+|nuORF	ENST00000262225.7_1_12:124082408-124082543:+|nuORF	ENST00000262225.7_1_12:124082408-124082543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2821350097656	2	489.278063	976.541574	-0.72473	-0.00035459	-4.0442	-0.0019787	-4.7689	-0.0023333	489.27540088983176	43.972	0.72263	43.753	43.385	44.108	-0.21939					27	19	2	0	0	0	0.027866	1	4021	4021		26.796	3.7594	1	311530			45297	11491	31363	31413	50715	50715					0.05236490064885402
LNLLRREV	8	Unmodified	_LNLLRREV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2718200683594	2	506.816733	1011.61891	-0.36227	-0.0001836	-0.39047	-0.0001979	-0.75274	-0.0003815	506.8164083236336	31.385	0.33512	31.397	31.17	31.505	0.011797					11	7	2	0	0	0	0.027866	1	2056	2056		52.299	31.352	1	49863			45298	4051;3357	31364	31414	50716	50716					0.1135684432541666
LNLLVAKQL	9	Unmodified	_LNLLVAKQL_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3003845214844	2	506.331685	1010.64882	-0.61165	-0.0003097	3.7852	0.0019166	3.1735	0.0016069	506.3337426387702	32.444	0.11215	32.455	32.376	32.488	0.011795					4	2	2	0	0	0	0.022484	1	2233	2233		94.006	22.711	1	25051	+		45299	25763	31365	31415	50717	50717					0.14391783270752967
LNLLVYLNQ	9	Unmodified	_LNLLVYLNQ_					0	0	0		ENST00000606522.1_1_6:10744115-10744349:-|nuORF	ENST00000606522.1_1_6:10744115-10744349:-|nuORF	ENST00000606522.1_1_6:10744115-10744349:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.271728515625	2	545.318774	1088.623	-0.51716	-0.00028201	-2.1598	-0.0011778	-2.677	-0.0014598	545.3178898655857	64.262	0.39824	64.034	63.825	64.223	-0.22774					17	9	3	0	0	0	0.024436	1	7277	7277		47.916	10.756	1	221720			45300	17566	31366	31416	50718	50718					0.08222889028456848
LNLLVYLNQ	9	Unmodified	_LNLLVYLNQ_					0	0	0		ENST00000606522.1_1_6:10744115-10744349:-|nuORF	ENST00000606522.1_1_6:10744115-10744349:-|nuORF	ENST00000606522.1_1_6:10744115-10744349:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.318774	1088.623	-0.15956	-8.7009E-05	-1.4374	-0.00078385	-1.597	-0.00087086	545.3177252803941	64.218	0.39243	64.025	63.881	64.273	-0.19244	-0.012909	-8.1947E-05	NaN	37.159	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238110			45301	17566	31366	31416							0.08222889028456848
LNLMLLGGQT	10	Unmodified	_LNLMLLGGQT_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000497693.1_1_9:37430482-37431094:+|nuORF;nc|ENSG00000137106|Q9UBQ7-2|GRHPR	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8136596679688	2	530.296985	1058.57942	-0.36802	-0.00019516	-2.9825	-0.0015816	-3.3505	-0.0017768	530.7968879949527	78.059	0.46646	77.797	77.653	78.119	-0.26202					15	10	2	0	0	0	0.03519	1	9291	9291		24.519	2.5593	1	71816			45302	13216	31367	31417	50719	50719					0.05246956259702529
LNLMQSGLTL	10	Unmodified	_LNLMQSGLTL_					0	0	0			REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.8211059570312	2	545.302267	1088.58998	-0.56011	-0.00030543	-1.3137	-0.00071639	-1.8739	-0.0010218	545.3016832882968	98.669	0.38721	98.502	98.286	98.673	-0.16649					16	8	3	0	0	0	0.03519	1	12210	12210		36.447	0	1	34442	+		45303	34348	31368	31418	50720	50720					0.049229389141146385
LNLNMAARR	9	Unmodified	_LNLNMAARR_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1;nc|ENSG00000170959|M0R2J8-3|DCDC1;nc|ENSG00000170959|M0R2J8-2|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8191528320312	2	529.798017	1057.58148	0.013565	7.1868E-06	-2.4617	-0.0013042	-2.4482	-0.001297	529.7964442463515	19.713	0.39387	19.552	19.331	19.725	-0.1608					11	7	2	0	0	0	0.024381	1	466	466		21.96	1.013	1	31257			45304	8100	31369	31419	50721	50721					0.05499429788142152
LNLPCCPLSP	10	Unmodified	_LNLPCCPLSP_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3116455078125	2	528.764463	1055.51437	-0.69166	-0.00036572	-1.382	-0.00073074	-2.0736	-0.0010965	528.7638719919304	60.697	0.56022	60.443	60.253	60.813	-0.25373					21	13	2	0	0	0	0.03519	1	6762	6762		58.23	5.2932	1	172100			45305	4388;663	31370	31420	50722	50722					-0.01116361537810917
LNLPLGVLF	9	Unmodified	_LNLPLGVLF_					0	0	0			REV__nc|ENSG00000126251|O15529|GPR42	REV__nc|ENSG00000126251|O15529|GPR42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2697448730469	2	493.307678	984.600803	-1.0121	-0.00049928	-3.0446	-0.0015019	-4.0567	-0.0020012	493.306038971618	25.913	0.49599	25.677	25.385	25.88	-0.23603					25	11	3	0	0	0	0.024354	1	1237	1237		38.806	3.6054	1	517710	+		45306	22887	31371	31421	50723	50723					0.10788709350708814
LNLPPWSL	8	Unmodified	_LNLPPWSL_					0	0	0			REV__ENST00000284320.5_1_3:100119564-100119939:-|nuORF	REV__ENST00000284320.5_1_3:100119564-100119939:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2666320800781	2	470.268553	938.522553	-0.34641	-0.0001629	-4.1671	-0.0019597	-4.5135	-0.0021226	470.2665127384437	29.852	1.2653	29.607	29.317	30.582	-0.24415					60	29	4	0	0	0	0.21344	1	1852	1852		138.24	4.4296	1	3146500	+		45307	29909	31372	31422	50724	50724					0.050832767654810596
LNLRFDFK	8	Unmodified	_LNLRFDFK_					0	0	0			REV__ENST00000318789.8_1_3:71006977-71007181:-|nuORF	REV__ENST00000318789.8_1_3:71006977-71007181:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.7968139648438	2	526.798009	1051.58147	0.063462	3.3432E-05	-1.5044	-0.00079252	-1.4409	-0.00075909	526.797050908111	79.076	0.87851	78.845	78.52	79.398	-0.23141					47	20	3	0	0	0	0.80469	1	9457	9457		58.782	0.97068	1	841600	+		45308	30314	31373	31423	50725	50725					0.05773753059793307
LNLRSTAVGE	10	Unmodified	_LNLRSTAVGE_					0	0	0			REV__ENST00000468499.5_1_7:99688666-99688864:+|nuORF	REV__ENST00000468499.5_1_7:99688666-99688864:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8197631835938	2	530.293288	1058.57202	-0.059464	-3.1533E-05	-4.3166	-0.002289	-4.376	-0.0023206	530.2905873099262	68.625	0.634	68.382	67.992	68.626	-0.24278					23	15	2	0	0	0	0.03519	1	7918	7918		63.534	13.509	1	320690	+		45309	33106	31374	31424	50726	50726					0.04507939983614051
LNLSDLVL	8	Unmodified	_LNLSDLVL_					0	0	0			REV__nc|ENSG00000140798|Q96J65|ABCC12	REV__nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.7647399902344	2	443.765843	885.517133	0.12053	5.3487E-05	-3.055	-0.0013557	-2.9345	-0.0013022	443.76444607559887	78.654	3.0913	78.399	77.578	80.67	-0.25471					182	73	3	0	0	0	1.0009	1	9590	9590		37.159	0	1	709500	+		45310	24042	31375	31425	50727	50727					0.0697955318298682
LNLSDNRLK	9	Unmodified	_LNLSDNRLK_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.8109130859375	2	536.809105	1071.60366	-1.6999	-0.00091254	2.8896	0.0015511	1.1896	0.0006386	536.8100432332413	65.218	0.61868	64.949	64.715	65.334	-0.26904					24	15	2	0	0	0	0.12914	1	7677	7677		104.06	0	1	1576900			45311	1021	31376	31426	50728	50728					0.0707193273754001
LNLSDNRLK	9	Unmodified	_LNLSDNRLK_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.8090209960938	2	536.809105	1071.60366	-0.46182	-0.00024791	-0.78505	-0.00042142	-1.2469	-0.00066933	536.8093187335754	31.682	0.7712	31.497	31.136	31.907	-0.18503					59	18	6	0	0	0	0.15029	1	2129	2129		99.375	0	1	1597700			45312	1021	31376	31426	50729	50729					0.0707193273754001
LNLSLKNLA	9	Unmodified	_LNLSLKNLA_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2699279785156	2	493.305667	984.596781	-0.13985	-6.8991E-05	0.26675	0.00013159	0.1269	6.26E-05	493.30555377242496	25.676	0.77414	25.505	24.997	25.771	-0.17078					37	18	4	0	0	0	0.024447	1	1188	1188		40.778	12.896	1	562250	+		45313	21664	31377	31427	50730	50730					0.10386619856990364
LNLSRMEVS	9	Unmodified	_LNLSRMEVS_					0	0	0			REV__ENST00000491073.5_1_16:2607608-2607764:+|nuORF	REV__ENST00000491073.5_1_16:2607608-2607764:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.8414306640625	2	524.776416	1047.53828	-0.17924	-9.4061E-05	-3.6097	-0.0018943	-3.789	-0.0019884	524.774687822646	46.617	0.6726	46.521	46.187	46.86	-0.096649					22	18	2	0	0	0	0.024389	1	4513	4513		35.152	1.6364	1	248660	+		45314	33719	31378	31428	50731	50731					0.01641195220213376
LNLTKWQPLI	10	Unmodified	_LNLTKWQPLI_					0	0	0			REV__ENSG00000228607|ENST00000453129|CLDN25	REV__ENSG00000228607|ENST00000453129|CLDN25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.2469787597656	3	409.248291	1224.72304	0.42019	0.00017196	-4.0041	-0.0016387	-3.5839	-0.0014667	409.2466928399336	37.663	1.5127	37.696	37.303	38.815	0.032269					135	41	5	0	0	0	0.37307	1	3068	3068		101.46	21.747	1	9816200	+		45315	28885	31379	31429	50732	50732					0.11967126362264935
LNLTRGVG	8	Unmodified	_LNLTRGVG_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.90576171875	2	415.248152	828.481751	0.42547	0.00017667	0.98484	0.00040895	1.4103	0.00058563	415.2487442772159	21	0.29494	21.069	20.956	21.251	0.068901					7	5	2	0	0	0	0.027866	1	574	574		12.207	0	1	29360			45316	10063	31380	31430	50733	50733					0.06064935445863284
LNLVAEKVVI	10	Unmodified	_LNLVAEKVVI_					0	0	0		ENSG00000148600|ENST00000623527|CDHR1;nc|ENSG00000148600|Q96JP9-2|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7670288085938	2	549.350074	1096.6856	-0.12653	-6.951E-05	-2.6421	-0.0014515	-2.7687	-0.001521	549.3484963180842	31.869	0.58083	31.632	31.373	31.954	-0.23667					21	13	2	0	0	0	0.03519	1	2176	2176		24.519	14.254	1	247470			45317	6041	31381	31431	50734	50734					0.14112035096650288
LNLVEGYKQ	9	Unmodified	_LNLVEGYKQ_					0	0	0			REV__ENSG00000104129|ENST00000220496|DNAJC17	REV__ENSG00000104129|ENST00000220496|DNAJC17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8349609375	2	532.292756	1062.57096	-0.3729	-0.00019849	3.9815	0.0021193	3.6085	0.0019208	532.2946136772903	104.12	0.52959	104.12	103.91	104.44	0.0031357					19	12	2	0	0	0	0.024457	1	13363	13363		37.159	13.636	1	103060	+		45318	21419	31382	31432	50735	50735					0.04217725614716983
LNLVFLLD	8	Unmodified	_LNLVFLLD_					0	0	0		nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.78704833984375	2	473.784036	945.553519	-0.30746	-0.00014567	2.4287	0.0011507	2.1212	0.001005	473.7841576763643	83.762	0.65123	83.788	83.555	84.206	0.02655					20	14	2	0	0	0	0.027866	1	10385	10385		25.45	0	1	73351			45319	8400	31383	31433	50736	50736					0.07856430079709753
LNLVFLLD	8	Unmodified	_LNLVFLLD_					0	0	0		nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.784036	945.553519	0.21931	0.00010391	0.27433	0.00012997	0.49364	0.00023388	473.7849267198724	83.983	0.25943	83.845	83.629	83.889	-0.13789	0.0284	-0.0010741	NaN	18.324	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22703			45320	8400	31383	31433							0.07856430079709753
LNLVLGVLS	9	Unmodified	_LNLVLGVLS_					0	0	0		nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;ENST00000533229.1_1_1:181452799-181620578:+|nuORF;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;ENSG00000081248|ENST00000362061|CACNA1S;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D;CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;ENSG00000081248|ENST00000362061|CACNA1S;nc|ENSG00000148408|Q00975-2|CACNA1B	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.2967224121094	2	464.29731	926.580068	-0.55673	-0.00025849	0.44903	0.00020848	-0.1077	-5.0005E-05	464.2973393168139	65.502	0.93868	65.251	64.986	65.925	-0.25112					45	22	3	0	0	0	0.25032	1	7480	7480		82.305	11.009	1	1672000			45321	202;18408;6175;1708;6028;18133	31384	31434	50737	50737					0.11384118971056978
LNLVSALEP	9	Unmodified	_LNLVSALEP_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.792724609375	2	478.276575	954.538597	0.25768	0.00012324	0.71929	0.00034402	0.97697	0.00046726	478.27628111729604	54.074	0.59241	53.927	53.639	54.232	-0.14723					30	16	2	0	0	0	0.02435	1	5872	5872		42.396	1.618	1	1423700			45322	3450	31385	31435	50738	50738					0.05950938211697121
LNLVTHPVK	9	Unmodified	_LNLVTHPVK_					0	0	0			REV__nc|ENSG00000188157|O00468-4|AGRN	REV__nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.78948974609375	2	510.813659	1019.61277	0.29424	0.0001503	4.4185	0.002257	4.7128	0.0024073	510.8154537646938	85.642	0.41959	85.447	85.301	85.721	-0.19508					17	9	3	0	0	0	0.024506	1	10393	10393		23.042	0	1	168750	+		45323	37039	31386	31436	50739	50739					0.10374326093892705
LNLVVIGHV	9	Unmodified	_LNLVVIGHV_					0	0	0		ENSG00000112339|ENST00000367837|HBS1L;nc|ENSG00000112339|Q9Y450-4|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.27532958984375	2	482.302927	962.591301	0.57773	0.00027864	-0.68982	-0.0003327	-0.11209	-5.4061E-05	482.3025092730815	64.227	0.99576	64.273	63.867	64.862	0.045502					56	26	3	0	0	0	0.024357	1	7515	7515		35.201	0	1	942360			45324	3205	31387	31437	50740	50740					0.10850941065177722
LNLWQVCV	8	Unmodified	_LNLWQVCV_					0	0	0		ENST00000462375.5_1_9:134385592-134386855:+|nuORF	ENST00000462375.5_1_9:134385592-134386855:+|nuORF	ENST00000462375.5_1_9:134385592-134386855:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2865905761719	2	487.760038	973.505523	0.04934	2.4066E-05	0.55711	0.00027174	0.60645	0.0002958	487.7600484062386	42.181	0.60619	41.95	41.725	42.331	-0.23029					41	16	3	0	0	0	0.027866	1	3732	3732		19.36	0	1	314720			45325	14705	31388	31438	50741	50741					0.017710328880184534
LNLYGSAR	8	Unmodified	_LNLYGSAR_					0	0	0			REV__ENST00000486818.5_1_7:72951185-72951437:-|nuORF	REV__ENST00000486818.5_1_7:72951185-72951437:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.2351379394531	2	447.245609	892.476666	-0.99319	-0.0004442	1.3075	0.00058478	0.31433	0.00014058	447.2460537828399	37.344	0.73069	37.125	36.885	37.615	-0.2195					36	18	4	0	0	0	0.027866	1	3061	3061		30.504	1.3541	1	529360	+		45326	33599	31389	31439	50742	50742					0.026126315832470937
LNLYIKSKP	9	Unmodified	_LNLYIKSKP_					0	0	0			REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	538.3245239257812	2	538.329142	1074.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.74	1	101.75	101.25	102.25	0.0073471								0	0	0	0.6703	1	12994	12994		26.693	1.1189	1		+		45327	31868	31390	31440	50743	50743					0.10939479408125408
LNLYILRP	8	Unmodified	_LNLYILRP_					0	0	0			REV__ENSG00000137507|ENST00000260061|LRRC32	REV__ENSG00000137507|ENST00000260061|LRRC32	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3080749511719	2	501.310752	1000.60695	-0.26401	-0.00013235	-2.9967	-0.0015023	-3.2607	-0.0016346	501.3092701422316	103.31	0.42107	103.18	102.96	103.38	-0.12783					17	9	3	0	0	0	1.0239	1	12863	12863		33.516	1.9858	1	167200	+		45328	23764	31391	31441	50744	50744					0.10667227582234773
LNLYSITTVT	10	Unmodified	_LNLYSITTVT_					0	0	0			REV__ENSG00000171051|ENST00000304748|FPR1	REV__ENSG00000171051|ENST00000304748|FPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.27392578125	2	562.813522	1123.61249	-0.32674	-0.0001839	3.446	0.0019395	3.1193	0.0017556	563.3186373788742	64.662	0.35379	64.46	64.224	64.577	-0.20254					13	8	2	0	0	0	0.03519	1	7339	7339		37.812	7.3079	1	66999	+		45329	26535	31392	31442	50745	50745					0.05562861583371159
LNMAPWQT	8	Unmodified	_LNMAPWQT_					0	0	0			REV__ENSG00000159208|ENST00000290363|CIART	REV__ENSG00000159208|ENST00000290363|CIART	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7795104980469	2	480.73402	959.453487	-0.69163	-0.00033249	-3.0884	-0.0014847	-3.78	-0.0018172	480.73286391108076	60.796	0.63664	60.867	60.639	61.276	0.071125					26	16	2	0	0	0	0.027866	1	6922	6922		37.159	0	1	95614	+		45330	25239	31393	31443	50746	50746					-0.02786130525748831
LNMFTELL	8	Unmodified	_LNMFTELL_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7923583984375	2	490.759704	979.504854	-0.36077	-0.00017705	1.9981	0.00098059	1.6373	0.00080354	490.76061076094715	61.156	0.37636	60.943	60.719	61.096	-0.21339					15	9	2	0	0	0	0.027866	1	7020	7020		17.365	0	1	169810			45331	10782	31394	31444	50747	50747					0.014281934483051373
LNMGPIPAP	9	Unmodified	_LNMGPIPAP_					0	0	0		nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216;MTHFD1L-RNF216|1|fusion;MTHFD1L-RNF216|3|fusion;MTHFD1L-RNF216|2|fusion	nc|ENSG00000011275|Q9NWF9|RNF216	nc|ENSG00000011275|Q9NWF9|RNF216	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7715148925781	2	455.246763	908.478974	0.4265	0.00019416	4.3796	0.0019938	4.806	0.0021879	455.2484992929437	72.679	1.0183	72.679	72.091	73.109	0					28	24	2	0	0	0	0.024466	1	8898	8898		25.45	0	1	628730			45332	891	31395	31445	50748	50748					0.021073439966926344
LNMHLSDI	8	Unmodified	_LNMHLSDI_					0	0	0		nc|ENSG00000293412|O75343|GUCY1B2;ENST00000389600.6_1_13:51590304-51594849:-|nuORF	nc|ENSG00000293412|O75343|GUCY1B2	nc|ENSG00000293412|O75343|GUCY1B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.75494384765625	2	471.739302	941.464052	-0.37897	-0.00017877	-3.151	-0.0014864	-3.5299	-0.0016652	471.7376871943166	37.605	0.7033	37.542	37.198	37.902	-0.063389					47	19	3	0	0	0	0.027866	1	3058	3058		18.324	0	1	2234200			45333	18845	31396	31446	50749	50749					-0.009021478713066244
LNMHRIIAID	10	Unmodified	_LNMHRIIAID_					0	0	0		ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	ENSG00000125863|ENST00000347364|MKKS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8569946289062	2	598.334433	1194.65431	-1.6914	-0.001012	0.90015	0.00053859	-0.79123	-0.00047342	598.3350387869626	91.251	0.41801	91.102	90.892	91.31	-0.1487					13	9	2	0	0	0	0.03519	1	11189	11189		20.947	0.95016	1	60058			45334	4154	31397	31447	50750	50750					0.0647713879091043
LNMIACIQFAK	11	Unmodified	_LNMIACIQFAK_					0	0	0			REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.89019775390625	3	417.891122	1250.65154	-0.094346	-3.9426E-05	-3.1726	-0.0013258	-3.267	-0.0013652	417.88973489956624	17.929	0.39791	17.723	17.564	17.962	-0.20669					10	7	2	0	0	0	1.0499	1	241	241		25.126	2.5644	1	67186	+		45335	26691	31398	31448	50751	50751					0.036235473417264075
LNMIACIQFAK	11	Unmodified	_LNMIACIQFAK_					0	0	0			REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	417.891122	1250.65154	-0.094346	-3.9426E-05	-3.1726	-0.0013258	-3.267	-0.0013652	417.88973489956624	17.929	0.39791	17.723	17.564	17.962	-0.20669	-0.0059013	0.0032903	NaN	25.126	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67186	+		45336	26691	31398	31448							0.036235473417264075
LNMIACIQFAK	11	Unmodified	_LNMIACIQFAK_					0	0	0			REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	417.891122	1250.65154	4.1228	0.0017229	-7.0811	-0.0029591	-2.9583	-0.0012363	417.8880672822801	17.977	0.29758	17.734	17.577	17.875	-0.24256	0.0059013	-0.0016097	NaN	25.126	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53968	+		45337	26691	31398	31448							0.036235473417264075
LNMIAKIPKPN	11	Unmodified	_LNMIAKIPKPN_					0	0	0			REV__ENSG00000011260|ENST00000225298|UTP18	REV__ENSG00000011260|ENST00000225298|UTP18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.868108	1237.72166	0.089003	5.517E-05	1.9977	0.0012383	2.0867	0.0012935	619.8691214704253	104.81	0.62352	104.69	104.38	105	-0.12561					43	18	3	0	0	0	1.0292	1	13042	13042		30.318	0	1	171530	+		45338	19923	31399	31449	50752	50752					0.11231169001871422
LNMLALLSP	9	Unmodified	_LNMLALLSP_					0	0	0			REV__ENST00000515213.1_1_7:420976-421372:+|nuORF	REV__ENST00000515213.1_1_7:420976-421372:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7477722167969	2	486.283346	970.552139	0.36479	0.00017739	-2.9608	-0.0014398	-2.596	-0.0012624	486.2814635561828	70.049	0.81504	69.827	69.39	70.205	-0.22245					36	19	2	0	0	0	0.023817	1	8143	8143		60.972	0	1	328770	+		45339	34192	31400	31450	50753	50753					0.06568472719322926
LNMLNILYI	9	Unmodified	_LNMLNILYI_					0	0	0		ENST00000486442.5_1_2:23929559-23929871:+|nuORF	ENST00000486442.5_1_2:23929559-23929871:+|nuORF	ENST00000486442.5_1_2:23929559-23929871:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3052368164062	2	553.817553	1105.62055	-1.0742	-0.00059494	3.8875	0.002153	2.8132	0.001558	554.3219275162055	75.399	0.88585	75.399	74.995	75.881	0					56	23	4	0	0	0	0.024293	1	9320	9320		52.299	0	1	670920			45340	15349	31401	31451	50754	50754					0.07196717299166266
LNMLNPLN	8	Unmodified	_LNMLNPLN_					0	0	0			REV__nc|ENSG00000058262|P61619-3|SEC61A1;REV__nc|ENSG00000065665|Q9H9S3-2|SEC61A2	REV__nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2790222167969	2	464.74967	927.484787	0.03075	1.4291E-05	-1.3295	-0.00061787	-1.2987	-0.00060358	464.74899783993317	51.933	0.43397	51.814	51.54	51.974	-0.11875					17	11	2	0	0	0	0.027866	1	5357	5357		38.806	0	1	120710	+		45341	20229;20320	31402	31452	50755	50755					0.018144425083619353
LNMTEIIIT	9	Unmodified	_LNMTEIIIT_					0	0	0			REV__ENST00000557520.1_1_14:88425979-88431954:-|nuORF	REV__ENST00000557520.1_1_14:88425979-88431954:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.272216796875	2	524.291368	1046.56818	-0.81645	-0.00042806	3.3721	0.0017679	2.5556	0.0013399	524.2930988936491	39.162	0.42108	39.162	38.97	39.391	0					24	11	3	0	0	0	0.024263	1	3379	3379		60.972	28.221	1	523150	+		45342	35072	31403	31453	50756	50756					0.04676134165561052
LNNDSNSRL	9	Unmodified	_LNNDSNSRL_					0	0	0			REV__ENSG00000162105|ENST00000601538|SHANK2	REV__ENSG00000162105|ENST00000601538|SHANK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.27734375	2	516.757069	1031.49959	-0.56045	-0.00028962	4.4149	0.0022814	3.8544	0.0019918	516.7592387466548	28.138	0.73347	28.134	27.848	28.582	-0.0042019					44	17	4	0	0	0	0.024495	1	1649	1649		26.693	19.003	1	598310	+		45343	25417	31404	31454	50757	50757					-0.01490394089955771
LNNELQKKQ	9	Unmodified	_LNNELQKKQ_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.3505859375	2	557.814387	1113.61422	-0.43606	-0.00024324	1.1378	0.00063469	0.70175	0.00039144	557.8147073832192	50.075	0.4744	50.075	49.768	50.242	0					27	13	3	0	0	0	0.0245	1	5177	5177		36.447	7.2972	1	327750			45344	10174	31405	31455	50758	50758					0.06195915392004281
LNNFSHRPS	9	Unmodified	_LNNFSHRPS_					0	0	0			REV__ENSG00000104856|ENST00000221452|RELB	REV__ENSG00000104856|ENST00000221452|RELB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.270147	1070.52574	0.27836	0.00014928	-0.3276	-0.00017568	-0.049235	-2.6403E-05	536.269489990409	19.315	0.49444	19.115	18.811	19.305	-0.2001					18	9	3	0	0	0	0.021513	1	369	369		116.9	37.453	1	70958	+		45345	21471	31406	31456	50759	50759					-0.006700801278157087
LNNFVEPWSRR	11	Unmodified	_LNNFVEPWSRR_					0	0	0			REV__ENSG00000124120|ENST00000262605|TTPAL	REV__ENSG00000124120|ENST00000262605|TTPAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.27154541015625	3	473.249354	1416.72623	-0.34479	-0.00016317	-2.2198	-0.0010505	-2.5646	-0.0012137	473.24833700754124	35.3	0.89986	35.087	34.685	35.584	-0.21246					33	22	2	0	0	0	0.024755	1	2608	2608		37.6	4.5605	1	204700	+		45346	22732	31407	31457	50760	50760					0.03453769468978862
LNNHRQML	8	Unmodified	_LNNHRQML_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3082275390625	2	513.269093	1024.52363	0.26406	0.00013553	1.2746	0.00065422	1.5387	0.00078976	513.7715708874467	54.166	0.38522	54.264	54.041	54.426	0.098015					15	10	2	0	0	0	0.027866	1	5857	5857		50.025	14.824	1	85990			45347	5346	31408	31458	50761	50761					0.012351678627283036
LNNHSLDLLAT	11	Unmodified	_LNNHSLDLLAT_					0	0	0			REV__ENSG00000181754|ENST00000369864|AMIGO1	REV__ENSG00000181754|ENST00000369864|AMIGO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2177734375	3	404.21906	1209.63535	-0.56914	-0.00023006	-1.3795	-0.0005576	-1.9486	-0.00078766	404.2184923782548	57.381	1.0168	57.148	56.805	57.822	-0.23363					83	26	5	0	0	0	1.0259	1	6276	6276		31.068	0.49928	1	11765000	+		45348	27421	31409	31459	50762	50762					0.0389188070084856
LNNKKLLDP	9	Unmodified	_LNNKKLLDP_					0	0	0			REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2926635742188	2	527.816399	1053.61824	-1.0272	-0.00054216	-0.71086	-0.0003752	-1.738	-0.00091736	527.8160075844131	54.749	0.85655	54.749	54.393	55.249	0					49	24	3	0	0	0	0.024263	1	6008	6008		34.173	0	1	6120300	+		45349	19324	31410	31460	50763	50763					0.09358004885712035
LNNLEKKSL	9	Unmodified	_LNNLEKKSL_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000512281.1_1_5:118470015-118483170:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.813720703125	2	529.813856	1057.61316	-0.1126	-5.9659E-05	3.333	0.0017659	3.2204	0.0017062	529.8134299031428	80.538	0.91306	80.332	79.714	80.627	-0.20633					40	21	3	0	0	0	0.31037	1	9667	9667		74.255	3.4388	1	573070			45350	8315	31411	31461	50764	50764					0.08665701023096517
LNNLEKKSL	9	Unmodified	_LNNLEKKSL_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000512281.1_1_5:118470015-118483170:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	529.813856	1057.61316	-0.022367	-1.185E-05	3.094	0.0016392	3.0716	0.0016274	529.8135080469444	80.472	0.86749	80.326	79.785	80.652	-0.146	-0.0031735	-0.00012629	NaN	74.255	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554740			45351	8315	31411	31461							0.08665701023096517
LNNPIHIF	8	Unmodified	_LNNPIHIF_					0	0	0			REV__PKDREJ|p.S297L|1|0.48|ENSG00000130943|chr22:46262433-46262433|G/A|missense_variant	REV__PKDREJ|p.S297L|1|0.48|ENSG00000130943|chr22:46262433-46262433|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2751159667969	2	484.271627	966.528701	-0.42015	-0.00020347	-0.97307	-0.00047123	-1.3932	-0.0006747	484.2709700993411	34.436	0.40176	34.261	34.128	34.53	-0.17557					19	9	3	0	0	0	0.027866	1	2512	2512		25.45	0	1	543760	+		45352	37380	31412	31462	50765	50765					0.04409794996990968
LNNPNRDTV	9	Unmodified	_LNNPNRDTV_					0	0	0			REV__ENSG00000177692|ENST00000381947|DNAJC28	REV__ENSG00000177692|ENST00000381947|DNAJC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7647705078125	2	521.767437	1041.52032	-0.72741	-0.00037954	1.434	0.00074821	0.70657	0.00036867	521.7682584875859	30.218	0.37261	30.226	30.082	30.455	0.0086708					10	8	2	0	0	0	0.024436	1	1917	1917		23.042	1.3402	1	30192	+		45353	27138	31413	31463	50766	50766					0.0012219628970342455
LNNQQGPPIV	10	Unmodified	_LNNQQGPPIV_					0	0	0			REV__nc|ENSG00000048991|Q15032|R3HDM1	REV__nc|ENSG00000048991|Q15032|R3HDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.2820434570312	2	540.29583	1078.57711	-1.5464	-0.00083551	2.3256	0.0012565	0.77922	0.00042101	540.2970006510295	80.39	0.25214	80.239	80.133	80.385	-0.15168					7	5	2	0	0	0	0.03519	1	9976	9976		35.618	24.753	1	217360	+		45354	20143	31414	31464	50767	50767					0.04096243846242942
LNNRDGQLLIL	11	Unmodified	_LNNRDGQLLIL_					0	0	0			REV__nc|ENSG00000122481|Q9Y3V2-2|RWDD3	REV__nc|ENSG00000122481|Q9Y3V2-2|RWDD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.5822448730469	3	423.582221	1267.72483	-0.05659	-2.397E-05	-0.091855	-3.8908E-05	-0.14844	-6.2879E-05	423.5820903061088	44.084	0.94846	44.121	43.528	44.476	0.0369					77	26	4	0	0	0	0.98082	1	4118	4118		41.08	3.5719	1	2512500	+		45355	22643	31415	31465	50768	50768					0.10168135380240528
LNNRKPHD	8	Unmodified	_LNNRKPHD_					0	0	0			REV__ENST00000358303.8_1_7:129680937-129691088:-|nuORF	REV__ENST00000358303.8_1_7:129680937-129691088:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2632751464844	2	497.264865	992.515176	-0.97259	-0.00048363	-4.3228	-0.0021496	-5.2954	-0.0026332	497.262694898755	44.149	1.7048	44.044	43.544	45.249	-0.10468					128	45	5	0	0	0	0.68535	1	4090	4090		68.485	2.6815	1	26568000	+		45356	30853	31416	31466	50769	50769					0.01861937217756804
LNPAAHLE	8	Unmodified	_LNPAAHLE_					0	0	0		nc|ENSG00000158321|Q8WXX7-5|AUTS2;nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.7321472167969	2	432.732335	863.450116	0.94554	0.00040916	-2.2002	-0.00095211	-1.2547	-0.00054294	432.7313165592402	98.51	1.8019	98.507	97.893	99.695	-0.0026855					100	41	3	0	0	0	1.0239	1	12564	12564		33.516	1.5607	1	3032200			45357	6663	31417	31467	50770	50770					0.012929426918958598
LNPAARPL	8	Unmodified	_LNPAARPL_					0	0	0		ENST00000373674.3_1_6:36922354-36922558:+|nuORF	ENST00000373674.3_1_6:36922354-36922558:+|nuORF	ENST00000373674.3_1_6:36922354-36922558:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77508544921875	2	426.25852	850.502486	-0.1193	-5.0854E-05	1.0311	0.00043951	0.91179	0.00038866	426.2588225500956	42.996	0.46846	42.857	42.631	43.1	-0.13929					20	12	2	0	0	0	0.027866	1	4010	4010		33.516	8.0654	1	301800			45358	13084	31418	31468	50771	50771					0.07125525825506429
LNPAARPL	8	Unmodified	_LNPAARPL_					0	0	0		ENST00000373674.3_1_6:36922354-36922558:+|nuORF	ENST00000373674.3_1_6:36922354-36922558:+|nuORF	ENST00000373674.3_1_6:36922354-36922558:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7753601074219	2	426.25852	850.502486	0.59052	0.00025172	0.199	8.4827E-05	0.78953	0.00033654	426.2584020389696	42.904	0.50622	42.932	42.682	43.188	0.027893					24	13	2	0	0	0	0.027866	1	3953	3953		25.45	21.766	1	398850			45359	13084	31418	31468	50772	50772					0.07125525825506429
LNPALLAR	8	Unmodified	_LNPALLAR_					0	0	0			REV__ENST00000606372.5_1_1:2263981-2323005:-|nuORF	REV__ENST00000606372.5_1_1:2263981-2323005:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.25213623046875	2	434.27417	866.533787	0.20276	8.8054E-05	2.6995	0.0011723	2.9023	0.0012604	434.27476451966265	77.456	1.9163	77.47	76.939	78.855	0.013504					75	45	2	0	0	0	0.027866	1	9602	9602		17.365	4.4058	1	259240	+		45360	35930	31419	31469	50773	50773					0.09518098859598467
LNPDPGQVI	9	Unmodified	_LNPDPGQVI_					0	0	0			REV__ENSG00000109180|ENST00000264312|OCIAD1	REV__ENSG00000109180|ENST00000264312|OCIAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7581787109375	2	476.758549	951.502546	0.59757	0.0002849	-1.8144	-0.00086505	-1.2169	-0.00058015	476.7575883352349	103.57	1.7067	103.44	102.86	104.57	-0.12723					123	42	4	0	0	0	0.74711	1	12941	12941		42.864	5.0528	1	2742400	+		45361	21786	31420	31470	50774	50774					0.024854810348642786
LNPECHHNI	9	Unmodified	_LNPECHHNI_					0	0	0			REV__ENSG00000181090|ENST00000460843|EHMT1	REV__ENSG00000181090|ENST00000460843|EHMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2435302734375	2	538.750733	1075.48691	-1.512	-0.0008146	1.9115	0.0010298	0.39946	0.00021521	538.7514883915926	55.692	0.76001	55.79	55.561	56.321	0.098015					35	20	3	0	0	0	0.024261	1	6058	6058		37.812	0	1	1757100	+		45362	27384	31421	31471	50775	50775					-0.04781128753847952
LNPFLYAFL	9	Unmodified	_LNPFLYAFL_					0	0	0		ENSG00000125522|ENST00000684052|NPBWR2;nc|ENSG00000288611|P48145|NPBWR1;nc|ENSG00000164270|Q13639-7|HTR4;nc|ENSG00000164270|Q13639-3|HTR4;nc|ENSG00000164270|Q13639-5|HTR4;nc|ENSG00000164270|Q13639-4|HTR4;nc|ENSG00000164270|Q13639-2|HTR4;ENSG00000164270|ENST00000377888|HTR4;nc|ENSG00000164270|Q13639-6|HTR4;nc|ENSG00000164270|Q13639-9|HTR4;nc|ENSG00000164270|Q13639-8|HTR4	ENSG00000125522|ENST00000684052|NPBWR2;nc|ENSG00000288611|P48145|NPBWR1;nc|ENSG00000164270|Q13639-7|HTR4	nc|ENSG00000288611|P48145|NPBWR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.302734375	2	549.305136	1096.59572	-0.077562	-4.2605E-05	-3.9112	-0.0021485	-3.9888	-0.0021911	549.3029425556938	78.69	1.1852	78.534	78.297	79.482	-0.15592					53	27	4	0	0	0	0.78069	1	9391	9391		40.573	1.3198	1	1689800			45363	4117;18819;7248	31422	31472	50776	50776					0.05128405488062526
LNPHIPNNN	9	Unmodified	_LNPHIPNNN_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2764892578125	2	516.764697	1031.51484	-0.11492	-5.9385E-05	-1.865	-0.00096379	-1.98	-0.0010232	517.2641271437058	88.788	0.50982	88.804	88.623	89.133	0.015907					14	11	2	0	0	0	0.024436	1	11143	11143		30.504	13.139	1	64010	+		45364	26063	31423	31473	50777	50777					0.0003451749792020564
LNPHIPNNN	9	Unmodified	_LNPHIPNNN_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.764697	1031.51484	-0.65192	-0.00033689	-1.9344	-0.00099964	-2.5864	-0.0013365	517.2649839783159	88.978	0.54163	88.807	88.463	89.004	-0.17054	-0.029327	0.00047254	NaN	10.265	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106370	+		45365	26063	31423	31473							0.0003451749792020564
LNPHIPNNN	9	Unmodified	_LNPHIPNNN_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.764697	1031.51484	0.0043678	2.2571E-06	-3.541	-0.0018299	-3.5366	-0.0018276	516.76283483443	89.019	0.71583	88.892	88.363	89.079	-0.12787	0.054982	-0.0011879	NaN	10.265	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39046	+		45366	26063	31423	31473							0.0003451749792020564
LNPLGGRPQ	9	Unmodified	_LNPLGGRPQ_					0	0	0			REV__ENST00000471466.5_1_5:176729462-176729608:-|nuORF	REV__ENST00000471466.5_1_5:176729462-176729608:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2607116699219	2	476.272158	950.529764	0.21115	0.00010057	3.6051	0.001717	3.8162	0.0018176	476.2743255826562	50.677	0.40286	50.4	50.224	50.627	-0.27643					14	10	2	0	0	0	0.024427	1	5129	5129		26.693	0	1	157310	+		45367	33176	31424	31474	50778	50778					0.05252009365904087
LNPLLLPR	8	Unmodified	_LNPLLLPR_					0	0	0			REV__ENSG00000089558|ENST00000264661|KCNH4	REV__ENSG00000089558|ENST00000264661|KCNH4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.30548095703125	2	468.30547	934.596387	-0.75523	-0.00035368	-0.01508	-7.062E-06	-0.77031	-0.00036074	468.3054831230446	61.988	0.80659	61.988	61.529	62.335	0					76	23	5	0	0	0	0.845	1	7189	7189		55.504	2.1528	1	45601000	+		45368	20855	31425	31475	50779	50779					0.12647244927791235
LNPNLYDNGK	10	Unmodified	_LNPNLYDNGK_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.2811889648438	2	574.290745	1146.56694	0.0036436	2.0925E-06	3.1387	0.0018025	3.1423	0.0018046	574.2923824414589	88.908	0.58234	88.77	88.566	89.148	-0.13761					30	13	3	0	0	0	0.03519	1	10844	10844		42.864	3.6114	1	272400			45369	8599	31426	31476	50780	50780					-0.00048363879000135057
LNPNNLIV	8	Unmodified	_LNPNNLIV_					0	0	0			REV__ENSG00000158077|ENST00000299481|NLRP14	REV__ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.2351379394531	2	448.763635	895.512717	-1.0203	-0.00045786	1.1527	0.00051728	0.13241	5.9422E-05	448.7640263927878	37.575	0.90583	37.356	36.962	37.868	-0.2195					50	23	4	0	0	0	0.027866	1	3061	3061		35.201	4.6971	1	1137600	+		45370	25170	31427	31477	50781	50781					0.060780887601026734
LNPRPLEP	8	Unmodified	_LNPRPLEP_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30548095703125	2	468.269084	934.523616	-0.68861	-0.00032245	4.0561	0.0018994	3.3675	0.0015769	468.27232809231333	61.955	0.24867	61.955	61.796	62.044	0					13	6	3	0	0	0	0.027866	1	7189	7189		71.877	29.481	1	142170			45371	7771	31428	31478	50782	50782					0.05373491134366759
LNPRTRSL	8	Unmodified	_LNPRTRSL_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-2|FMN1	REV__nc|ENSG00000248905|Q68DA7-2|FMN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.30078125	2	478.785433	955.556313	0.0092859	4.4459E-06	0.47383	0.00022686	0.48312	0.00023131	478.7856352468278	31.411	0.78584	31.423	30.956	31.742	0.011797					24	18	2	0	0	0	0.027866	1	2074	2074		42.396	0	1	253030	+		45372	29013	31429	31479	50783	50783					0.07675698257230579
LNQFLKHAI	9	Unmodified	_LNQFLKHAI_					0	0	0		ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2935180664062	2	542.319109	1082.62366	-1.0399	-0.00056396	-1.6534	-0.00089669	-2.6933	-0.0014607	542.3180920578362	40.239	1.0567	40.127	39.291	40.347	-0.11222					43	28	2	0	0	0	0.023181	1	3419	3419		94.006	3.4056	1	328970			45373	15320	31430	31480	50784	50784					0.08565728468170164
LNQFLKHAI	9	Unmodified	_LNQFLKHAI_					0	0	0		ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.319109	1082.62366	-0.82979	-0.00045001	-3.4505	-0.0018713	-4.2803	-0.0023213	542.3171264409467	40.18	0.54741	40.03	39.783	40.331	-0.1497	-0.097893	-0.00087294	NaN	94.006	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825060			45374	15320	31430	31480							0.08565728468170164
LNQFLKHAI	9	Unmodified	_LNQFLKHAI_					0	0	0		ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.319109	1082.62366	-0.40106	-0.0002175	-3.5996	-0.0019521	-4.0006	-0.0021696	542.3170386678693	40.353	0.51653	40.128	39.852	40.368	-0.225	-0.0002519	-0.0010346	NaN	94.006	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667630			45375	15320	31430	31480							0.08565728468170164
LNQFLKHAI	9	Unmodified	_LNQFLKHAI_					0	0	0		ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	ENST00000485101.5_1_3:186505555-186505672:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.319109	1082.62366	-1.7664	-0.00095794	-2.1438	-0.0011626	-3.9102	-0.0021206	542.3178616998916	40.372	0.48733	40.142	39.891	40.378	-0.23021	0.01351	0.0005443	NaN	94.006	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802840			45376	15320	31430	31480							0.08565728468170164
LNQFQHITN	9	Unmodified	_LNQFQHITN_					0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.8322143554688	2	557.78563	1113.55671	0.25731	0.00014353	3.6398	0.0020302	3.8971	0.0021737	557.7875301567524	22.462	0.27211	22.273	22.102	22.374	-0.18894					7	5	2	0	0	0	0.024477	1	786	786		20.947	0	1	15661	+		45377	25922	31431	31481	50785	50785					0.004470731864330446
LNQFQLLL	8	Unmodified	_LNQFQLLL_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|33	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7950134277344	2	494.794935	987.575317	-0.37922	-0.00018763	0.86871	0.00042983	0.48949	0.0002422	494.79520384729506	92.821	0.72227	92.816	92.52	93.242	-0.0042038					43	16	4	0	0	0	0.68535	1	11747	11747		68.485	5.1784	1	855080	+		45378	19466	31432	31482	50786	50786					0.08103234828286077
LNQIGMWPAD	10	Unmodified	_LNQIGMWPAD_					0	0	0			REV__FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	REV__FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.837646484375	2	572.776416	1143.53828	-0.85528	-0.00048989	-3.4283	-0.0019637	-4.2836	-0.0024535	572.7741102351222	61.963	0.19144	61.785	61.691	61.883	-0.17781					7	4	2	0	0	0	0.03519	1	6954	6954		26.693	9.9755	1	119730	+		45379	20693	31433	31483	50787	50787					-0.02774804779801343
LNQKKLHA	8	Unmodified	_LNQKKLHA_					0	0	0			REV__CON__Q3MHN2	REV__CON__Q3MHN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2904968261719	2	476.290351	950.566149	2.315	0.0011026	-2.3485	-0.0011186	-0.033542	-1.5976E-05	476.289082723405	18.94	0.69294	18.706	18.483	19.176	-0.23345					25	13	3	0	0	0	0.52467	1	336	336		83.287	0	1	404600	+	+	45380	19585	31434	31484	50788	50788					0.08888886262616325
LNQKLLSI	8	Unmodified	_LNQKLLSI_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.794921875	2	464.794935	927.575317	0.01405	6.5305E-06	-0.33608	-0.00015621	-0.32203	-0.00014968	464.79475122110193	34.005	1.0553	33.781	33.485	34.54	-0.22412					76	26	5	0	0	0	0.46709	1	2490	2490		88.643	3.2834	1	9242700	+		45381	21955	31435	31485	50789	50789					0.1086323482828675
LNQKLLSI	8	Unmodified	_LNQKLLSI_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.7952575683594	2	464.794935	927.575317	-1.2657	-0.00058829	0.90542	0.00042083	-0.36029	-0.00016746	464.79533553994145	33.988	1.0641	33.813	33.507	34.571	-0.17557					74	26	5	0	0	0	0.53523	1	2434	2434		82.305	5.4584	1	8647700	+		45382	21955	31435	31485	50790	50790					0.1086323482828675
LNQKQRKP	8	Unmodified	_LNQKQRKP_					0	0	0			REV__ENST00000515403.5_2_5:175602049-175603287:-|nuORF	REV__ENST00000515403.5_2_5:175602049-175603287:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.274169921875	2	506.306532	1010.59851	-0.37372	-0.00018922	-2.017	-0.0010212	-2.3907	-0.0012104	506.30657527312127	67.337	0.4766	67.049	66.791	67.268	-0.28834					28	11	4	0	0	0	0.027866	1	8018	8018		37.159	0	1	783230	+		45383	34196	31436	31486	50791	50791					0.0936367366560944
LNQKTGQLLG	10	Unmodified	_LNQKTGQLLG_					0	0	0			REV__nc|ENSG00000091262|O95255-3|ABCC6	REV__nc|ENSG00000091262|O95255-3|ABCC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3291625976562	2	536.31148	1070.60841	0.20393	0.00010937	-4.0341	-0.0021635	-3.8302	-0.0020542	536.3081522024131	19.145	0.29771	18.984	18.836	19.134	-0.16079					6	5	2	0	0	0	0.03519	1	382	382		101.25	5.4375	1	9627.4	+		45384	36506	31437	31487	50792	50792					0.07592816880332975
LNQKVLNL	8	Unmodified	_LNQKVLNL_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2927551269531	2	471.292559	940.570566	0.3653	0.00017216	-0.44603	-0.00021021	-0.080726	-3.8046E-05	471.29235913514	50.39	1.4067	50.238	49.817	51.224	-0.1512					111	40	4	0	0	0	0.81662	1	5207	5207		57.811	2.3071	1	27149000	+		45385	23505	31438	31488	50793	50793					0.09790350685523208
LNQLLGIEI	9	Unmodified	_LNQLLGIEI_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8058166503906	2	506.8055	1011.59645	-1.5024	-0.00076141	1.2779	0.00064765	-0.22446	-0.00011376	506.80617118592744	90.729	0.91899	90.729	90.173	91.092	0					61	21	4	0	0	0	0.20967	1	11478	11478		87.754	5.5138	1	1727700	+		45386	26572	31439	31489	50794	50794					0.0911120013714708
LNQLLGVE	8	Unmodified	_LNQLLGVE_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.77130126953125	2	443.255643	884.496732	-0.024415	-1.0822E-05	-1.9473	-0.00086317	-1.9718	-0.00087399	443.25515171259366	32.285	0.4155	32.127	31.948	32.363	-0.15772					14	9	2	0	0	0	0.027866	1	2224	2224		68.787	7.8149	1	66239	+		45387	26531	31440	31490	50795	50795					0.04986382523202337
LNQLQAAHS	9	Unmodified	_LNQLQAAHS_					0	0	0			REV__ENST00000579008.1_1_18:8412788-8413139:+|nuORF	REV__ENST00000579008.1_1_18:8412788-8413139:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.29547119140625	2	491.259248	980.503943	-0.16793	-8.2498E-05	3.8038	0.0018686	3.6358	0.0017861	491.26055241138965	56.641	0.468	56.641	56.277	56.745	0					15	12	2	0	0	0	0.024323	1	6326	6326		35.618	17.294	1	127880	+		45388	35500	31441	31491	50796	50796					0.012911151236039586
LNQLVAHGGN	10	Unmodified	_LNQLVAHGGN_					0	0	0			REV__ENST00000467305.1_1_13:96637506-96665674:-|nuORF	REV__ENST00000467305.1_1_13:96637506-96665674:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7897644042969	2	511.772522	1021.53049	1.7275	0.00088408	0.68115	0.00034859	2.4086	0.0012327	511.77246322881876	82.717	0.60111	82.607	82.252	82.853	-0.11006					21	13	2	0	0	0	0.03519	1	10276	10276		13.454	0	1	234060	+		45389	33071	31442	31492	50797	50797					0.020588040149505105
LNQMIVIEL	9	Unmodified	_LNQMIVIEL_					0	0	0		ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.8090209960938	2	536.807185	1071.59982	-0.31882	-0.00017114	3.6187	0.0019425	3.2998	0.0017714	536.8093963268041	31.75	0.72121	31.509	31.185	31.906	-0.2406					31	17	3	0	0	0	0.06122	1	2142	2142		124.59	14.474	1	1884600			45390	899	31443	31493	50798	50798					0.0668812691947096
LNQMIVIEL	9	Unmodified	_LNQMIVIEL_					0	0	0		ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	ENSG00000011465|ENST00000052754|DCN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	536.807185	1071.59982	-1.0948	-0.0005877	2.7246	0.0014626	1.6298	0.00087487	536.8094012478937	31.699	0.55116	31.546	31.232	31.783	-0.15231	0.02871	-0.00052498	NaN	124.59	42	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1676000			45391	899	31443	31493							0.0668812691947096
LNQNFSEVW	9	Unmodified	_LNQNFSEVW_					0	0	0		nc|ENSG00000196458|Q86T29-2|ZNF605	nc|ENSG00000196458|Q86T29-2|ZNF605	nc|ENSG00000196458|Q86T29-2|ZNF605	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.7703247070312	2	568.772188	1135.52982	0.010157	5.7772E-06	-3.8054	-0.0021644	-3.7953	-0.0021586	568.769774540671	72.51	0.9342	72.233	71.908	72.842	-0.2769					42	21	3	0	0	0	0.72875	1	8495	8495		44.117	1.7207	1	638120			45392	18626	31444	31494	50799	50799					-0.03252035424748101
LNQNGVHVI	9	Unmodified	_LNQNGVHVI_					0	0	0		ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	ENSG00000184860|ENST00000328945|SDR42E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2728576660156	2	497.277441	992.540328	-0.66374	-0.00033006	0.10703	5.3226E-05	-0.5567	-0.00027684	497.27737727232324	40.206	0.5848	40.229	39.977	40.562	0.023006					42	15	4	0	0	0	0.4855	1	3468	3468		60.294	6.9425	1	2939900			45393	9374	31445	31495	50800	50800					0.043759920203456204
LNQNVLIN	8	Unmodified	_LNQNVLIN_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2842102050781	2	464.266542	926.51853	1.9843	0.00092126	-2.0917	-0.00097109	-0.10733	-4.9831E-05	464.2652451702302	24.476	1.0078	24.295	23.715	24.723	-0.18089					35	22	3	0	0	0	0.027866	1	1078	1078		25.45	0	1	308620	+		45394	24519	31446	31496	50801	50801					0.05233187271767292
LNQPVSVYPL	10	Unmodified	_LNQPVSVYPL_					0	0	0		ENST00000486331.1_1_22:41716661-41728273:+|nuORF	ENST00000486331.1_1_22:41716661-41728273:+|nuORF	ENST00000486331.1_1_22:41716661-41728273:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.3165893554688	2	565.316232	1128.61791	-0.15064	-8.5161E-05	0.1448	8.1859E-05	-0.0058409	-3.3019E-06	565.3162646410173	95	1.208	95.004	94.564	95.772	0.0033722					76	27	4	0	0	0	0.69662	1	12052	12052		67.494	1.0644	1	2159100			45395	15345	31447	31497	50802	50802					0.0587458516586139
LNQRQAHVD	9	Unmodified	_LNQRQAHVD_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7803955078125	2	540.780879	1079.5472	-1.324	-0.00071598	0.5582	0.00030187	-0.76576	-0.00041411	540.7810206603442	28.347	0.87072	28.102	27.882	28.753	-0.24524					47	20	3	0	0	0	0.18915	1	1643	1643		90.777	14.003	1	1470200			45396	2651	31448	31498	50803	50803					0.010613049009180031
LNQSRLAV	8	Unmodified	_LNQSRLAV_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7667236328125	2	450.766709	899.518865	-0.50458	-0.00022745	-0.052206	-2.3533E-05	-0.55678	-0.00025098	450.7666834549954	35.226	0.84675	35.039	34.641	35.488	-0.18675					66	21	5	0	0	0	0.6536	1	2631	2631		71.296	0	1	7562200	+		45397	23325	31449	31499	50804	50804					0.06508606991610577
LNQTVEKPN	9	Unmodified	_LNQTVEKPN_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;TDRD7|p.E433Sfs*5|1|0.24|ENSG00000196116|chr9:97460617-97460617|A/-|frameshift_variant	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7803955078125	2	521.780013	1041.54547	0.31697	0.00016539	0.91059	0.00047513	1.2276	0.00064052	521.7803347831405	85.688	0.8843	85.688	85.372	86.257	0					60	20	4	0	0	0	0.53979	1	10755	10755		56.721	0	1	2567400			45398	9821	31450	31500	50805	50805					0.026362510922808724
LNRAIVAL	8	Unmodified	_LNRAIVAL_					0	0	0			REV__ENSG00000145439|ENST00000306193|CBR4	REV__ENSG00000145439|ENST00000306193|CBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.780029296875	2	435.281995	868.549437	-0.36287	-0.00015795	-0.59364	-0.0002584	-0.95651	-0.00041635	435.2817093180742	45.922	0.70198	45.719	45.528	46.23	-0.20226					34	18	2	0	0	0	0.027866	1	4380	4380		52.299	17.098	1	855230	+		45399	24410	31451	31501	50806	50806					0.10990385376669565
LNRAKSTL	8	Unmodified	_LNRAKSTL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.7745056152344	2	451.774534	901.534515	0.53672	0.00024248	-0.56877	-0.00025696	-0.032053	-1.4481E-05	451.77422096522645	21.331	0.57558	21.154	20.87	21.445	-0.17721					34	11	4	0	0	0	0.56592	1	656	656		79.451	8.0731	1	669740			45400	2053	31452	31502	50807	50807					0.07980893508670306
LNRAKSTL	8	Unmodified	_LNRAKSTL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.77447509765625	2	451.774534	901.534515	-1.3728	-0.00062019	1.2142	0.00054856	-0.15855	-7.1629E-05	451.7750249234346	21.486	0.58416	21.273	20.971	21.555	-0.2128					30	11	4	0	0	0	0.36844	2	645	635;645		101.6	33.116	1	683720			45401	2053	31452	31502	50808;50809	50809					0.07980893508670306
LNRAKSTL	8	Unmodified	_LNRAKSTL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	451.774534	901.534515	0.072932	3.2949E-05	-0.091045	-4.1132E-05	-0.018113	-8.1828E-06	451.7744200966355	21.49	0.633	21.299	20.931	21.564	-0.19072	0.057111	-8.0461E-05	NaN	101.6	38	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637930			45402	2053	31452	31502							0.07980893508670306
LNRALKINL	9	Unmodified	_LNRALKINL_					0	0	0			REV__ENST00000526986.5_1_11:66288770-66294440:-|nuORF	REV__ENST00000526986.5_1_11:66288770-66294440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3555297851562	2	527.840208	1053.66586	-1.12	-0.00059116	0.74556	0.00039354	-0.37439	-0.00019762	527.8407982804958	50.485	0.39936	50.485	50.242	50.642	0					26	11	3	0	0	0	0.024457	1	5279	5279		21.96	0	1	321160	+		45403	34463	31453	31503	50810	50810					0.14117703876559062
LNRCSVTIEV	10	Unmodified	_LNRCSVTIEV_					0	0	0			REV__ENSG00000124772|ENST00000244751|CPNE5	REV__ENSG00000124772|ENST00000244751|CPNE5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3192749023438	2	567.302798	1132.59104	-1.1185	-0.00063453	-3.1166	-0.0017681	-4.2351	-0.0024026	567.8025358628736	57.253	0.58707	57.348	56.878	57.465	0.09531					29	15	3	0	0	0	0.03519	1	6318	6318		36.447	0	1	368680	+		45404	22786	31454	31504	50811	50811					0.030051532830157157
LNRFQHSH	8	Unmodified	_LNRFQHSH_					0	0	0			REV__ENST00000414608.1_1_7:65238610-65238703:+|nuORF	REV__ENST00000414608.1_1_7:65238610-65238703:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7928466796875	2	519.765032	1037.51551	1.4182	0.00073711	0.86364	0.00044889	2.2818	0.001186	519.7652446748934	63.754	0.49946	63.802	63.549	64.049	0.04855					19	13	2	0	0	0	0.027866	1	7427	7427		1.0954	0	1	358120	+		45405	32039	31455	31505	50812	50812					-0.0017464306238252902
LNRGLWEPW	9	Unmodified	_LNRGLWEPW_					0	0	0		ENST00000609803.2_1_12:46120731-46120878:-|nuORF	ENST00000609803.2_1_12:46120731-46120878:-|nuORF	ENST00000609803.2_1_12:46120731-46120878:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.2848510742188	2	585.806365	1169.59818	0.64042	0.00037516	-3.1268	-0.0018317	-2.4864	-0.0014565	585.8046024711459	59.585	0.5574	59.387	59.132	59.689	-0.19742					19	13	2	0	0	0	0.024541	1	6566	6566		24.203	0	1	115480			45406	17611	31456	31506	50813	50813					0.020162539457487583
LNRGSPAL	8	Unmodified	_LNRGSPAL_					0	0	0			REV__ENSG00000123415|ENST00000682136|SMUG1	REV__ENSG00000123415|ENST00000682136|SMUG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.240478515625	2	414.240327	826.466101	-0.42915	-0.00017777	0.29961	0.00012411	-0.12954	-5.3659E-05	414.2403880218714	30.206	1.0244	30.206	29.692	30.717	0					74	24	5	0	0	0	0.845	1	1915	1915		55.504	2.1528	1	4517700	+		45407	22695	31457	31507	50814	50814					0.045926489288035555
LNRILGTL	8	Unmodified	_LNRILGTL_					0	0	0			REV__PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	REV__PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7533264160156	2	450.287277	898.560001	-0.43326	-0.00019509	0.72139	0.00032483	0.28812	0.00012974	450.28740471464334	61.798	0.70153	61.86	61.386	62.087	0.062767					42	18	3	0	0	0	0.027866	1	7014	7014		38.806	22.333	1	1007300	+		45408	27662	31458	31508	50815	50815					0.10666368031104412
LNRKIVQV	8	Unmodified	_LNRKIVQV_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;nc|ENSG00000114859|P51788-4|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.31304931640625	2	485.313826	968.613099	0.071989	3.4937E-05	-1.1428	-0.00055463	-1.0708	-0.0005197	485.31328019992156	40.081	1.6608	40.081	39.771	41.432	0					123	46	5	0	0	0	0.46709	3	3517	3499;3517;3532		88.643	10.673	1	27095000			45409	3390	31459	31509	50816;50817;50818	50817					0.12753745813768091
LNRKIVQV	8	Unmodified	_LNRKIVQV_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;nc|ENSG00000114859|P51788-4|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.3132629394531	2	485.313826	968.613099	-0.19609	-9.5163E-05	-0.68154	-0.00033076	-0.87763	-0.00042592	485.31350998505343	40.188	1.7945	40.076	39.754	41.548	-0.11223					134	49	5	0	0	0	0.46709	1	3499	3499		88.643	11.796	1	28426000			45410	3390	31459	31509	50819	50819					0.12753745813768091
LNRKIVQV	8	Unmodified	_LNRKIVQV_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;nc|ENSG00000114859|P51788-4|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.3114929199219	2	485.313826	968.613099	-1.0784	-0.00052335	0.29743	0.00014435	-0.78095	-0.00037901	485.31398015188483	40.346	1.4753	40.369	40.088	41.564	0.023006					108	41	5	0	0	0	0.43637	2	3517	3484;3517		92.191	24.435	1	29243000			45411	3390	31459	31509	50820;50821	50821					0.12753745813768091
LNRKLLDL	8	Unmodified	_LNRKLLDL_					0	0	0			REV__ENST00000548939.1_1_12:70732225-70736007:+|nuORF	REV__ENST00000548939.1_1_12:70732225-70736007:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.76416015625	2	492.813659	983.612765	-0.46354	-0.00022844	2.5109	0.0012374	2.0474	0.001009	492.8139149056077	78.202	0.82323	78.218	77.698	78.522	0.015907					33	19	3	0	0	0	0.027866	1	9544	9544		60.972	8.6728	1	170330	+		45412	34886	31460	31510	50822	50822					0.12030326093906751
LNRKNVGLSV	10	Unmodified	_LNRKNVGLSV_					0	0	0			REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2277221679688	2	550.332747	1098.65094	-0.45486	-0.00025033	3.8468	0.002117	3.392	0.0018667	550.3347230639312	39.918	0.64048	39.768	39.513	40.153	-0.1497					39	16	4	0	0	0	0.03519	1	3379	3379		25.574	7.2496	1	748780	+		45413	32860	31461	31511	50823	50823					0.10556212008555121
LNRKNVGLSV	10	Unmodified	_LNRKNVGLSV_					0	0	0			REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.332747	1098.65094	-0.65743	-0.00036181	4.2835	0.0023573	3.626	0.0019955	550.3349948809131	40.083	0.68855	39.853	39.546	40.235	-0.23021	0.034059	0.00035551	NaN	19.104	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	697780	+		45414	32860	31461	31511							0.10556212008555121
LNRLFQEV	8	Unmodified	_LNRLFQEV_					0	0	0		nc|ENSG00000257923|P39880-4|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	nc|ENSG00000257923|P39880-4|CUX1	nc|ENSG00000257923|P39880-4|CUX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7847900390625	2	509.787641	1017.56073	-0.15804	-8.0566E-05	0.79544	0.00040551	0.6374	0.00032494	509.78763326112534	59.872	0.54498	59.672	59.393	59.938	-0.20016					35	14	4	0	0	0	0.83003	1	6828	6828		56.721	3.3696	1	2783700			45415	10924	31462	31512	50824	50824					0.05265162680143476
LNRLVTKT	8	Unmodified	_LNRLVTKT_					0	0	0		ENST00000315792.4_1_8:40011460-40011619:+|nuORF	ENST00000315792.4_1_8:40011460-40011619:+|nuORF	ENST00000315792.4_1_8:40011460-40011619:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7809143066406	2	472.798009	943.581465	0.41747	0.00019738	-0.81114	-0.0003835	-0.39366	-0.00018612	472.79751141443637	23.835	0.61463	23.633	23.398	24.012	-0.20193					33	13	4	0	0	0	0.027866	1	998	998		26.693	4.733	1	285830			45416	12140	31463	31513	50825	50825					0.10741753059812709
LNRNPLILEE	10	Unmodified	_LNRNPLILEE_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.21826171875	3	404.231189	1209.67174	-0.026325	-1.0641E-05	-3.4593	-0.0013984	-3.4857	-0.001409	404.563229909242	57.261	0.28404	57.094	56.932	57.216	-0.1672					11	7	2	0	0	0	0.03519	1	6244	6244		37.508	18.245	1	175600	+		45417	22407	31464	31514	50826	50826					0.07528757597606273
LNRPAVKV	8	Unmodified	_LNRPAVKV_					0	0	0		ENST00000455140.6_2_19:16472777-16487983:-|nuORF	ENST00000455140.6_2_19:16472777-16487983:-|nuORF	ENST00000455140.6_2_19:16472777-16487983:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.235107421875	2	448.787444	895.560336	-0.80611	-0.00036177	1.2572	0.0005642	0.45106	0.00020243	448.78773438536916	38.187	0.50066	37.965	37.686	38.187	-0.22148					19	14	2	0	0	0	0.027866	1	3083	3083		40.573	12.318	1	126790			45418	14570	31465	31515	50827	50827					0.10837787750949701
LNRPAVKV	8	Unmodified	_LNRPAVKV_					0	0	0		ENST00000455140.6_2_19:16472777-16487983:-|nuORF	ENST00000455140.6_2_19:16472777-16487983:-|nuORF	ENST00000455140.6_2_19:16472777-16487983:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	448.787444	895.560336	-0.46974	-0.00021081	0.24801	0.0001113	-0.22173	-9.9509E-05	448.7875926052695	38.187	0.32585	38.008	37.844	38.17	-0.17929	0.012531	-0.00014331	NaN	65.803	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127500			45419	14570	31465	31515							0.10837787750949701
LNRPAVKV	8	Unmodified	_LNRPAVKV_					0	0	0		ENST00000455140.6_2_19:16472777-16487983:-|nuORF	ENST00000455140.6_2_19:16472777-16487983:-|nuORF	ENST00000455140.6_2_19:16472777-16487983:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	448.787444	895.560336	-0.59784	-0.0002683	0.70773	0.00031762	0.10989	4.9318E-05	448.7875365741876	38.231	0.42588	38.013	37.792	38.218	-0.21848	0.017413	0.00026932	NaN	65.803	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187480			45420	14570	31465	31515							0.10837787750949701
LNRPDPIL	8	Unmodified	_LNRPDPIL_					0	0	0			REV__nc|ENSG00000126583|P05129-2|PRKCG	REV__nc|ENSG00000126583|P05129-2|PRKCG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.2771911621094	2	469.276909	936.539266	0.3163	0.00014843	-0.29858	-0.00014012	0.017717	8.3143E-06	469.27667076878555	50.037	1.0392	49.885	49.52	50.559	-0.1512					69	29	3	0	0	0	0.89627	1	5171	5171		51.335	0	1	4206100	+		45421	22905	31466	31516	50828	50828					0.06845777651415119
LNRPDTFSV	9	Unmodified	_LNRPDTFSV_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3043212890625	2	524.774731	1047.53491	0.043086	2.261E-05	3.4173	0.0017933	3.4604	0.0018159	524.7762940132305	69.823	0.49992	69.572	69.317	69.817	-0.25063					21	11	2	0	0	0	0.024294	1	8116	8116		29.15	0	1	328500			45422	37917	31467	31517	50829	50829					0.013042684378660852
LNRPGSKP	8	Unmodified	_LNRPGSKP_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7779235839844	2	434.753601	867.49265	0.29172	0.00012683	-2.0917	-0.00090935	-1.7999	-0.00078253	434.7525660888599	36.881	0.61474	36.688	36.537	37.152	-0.193					24	15	3	0	0	0	0.027866	1	2912	2912		16.473	8.7829	1	134860	+		45423	21946	31468	31518	50830	50830					0.05360337820150107
LNRPGSKP	8	Unmodified	_LNRPGSKP_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	434.753601	867.49265	-0.33455	-0.00014545	-1.8496	-0.00080412	-2.1842	-0.00094957	434.75281796134067	36.954	0.39627	36.735	36.488	36.885	-0.2195	0.039353	0.00045177	NaN	16.473	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141640	+		45424	21946	31468	31518							0.05360337820150107
LNRPGSKP	8	Unmodified	_LNRPGSKP_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	434.753601	867.49265	1.3584	0.00059057	-3.2445	-0.0014106	-1.8861	-0.00081998	434.7521959247707	36.873	0.59013	36.663	36.485	37.075	-0.2092	-0.031869	-0.00076109	NaN	16.473	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216050	+		45425	21946	31468	31518							0.05360337820150107
LNRPTAWATP	10	Unmodified	_LNRPTAWATP_					0	0	0			REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.8057250976562	2	563.803823	1125.59309	-0.60076	-0.00033871	-0.45166	-0.00025465	-1.0524	-0.00059336	563.8033987617627	34.986	0.34453	34.799	34.641	34.985	-0.18675					13	8	2	0	0	0	0.03519	1	2580	2580		8.6937	0	1	154640	+		45426	34904	31469	31519	50831	50831					0.035319500831292316
LNRQEPTL	8	Unmodified	_LNRQEPTL_					0	0	0			REV__nc|ENSG00000184617|A6NDX5|ZNF840P	REV__nc|ENSG00000184617|A6NDX5|ZNF840P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7677917480469	2	485.769448	969.524344	-0.096255	-4.6758E-05	-0.027438	-1.3329E-05	-0.12369	-6.0086E-05	485.7694159812467	46.911	0.90826	46.911	46.273	47.181	0					38	24	2	0	0	0	0.6536	1	4661	4661		71.296	0.47949	1	2176500	+		45427	37011	31470	31520	50832	50832					0.03836285783427229
LNRRGLLW	8	Unmodified	_LNRRGLLW_					0	0	0			REV__ENSG00000135116|ENST00000257572|HRK	REV__ENSG00000135116|ENST00000257572|HRK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7346801757812	2	514.311618	1026.60868	-0.21807	-0.00011215	3.2658	0.0016796	3.0477	0.0015675	514.8142351907757	41.61	0.37308	41.474	41.294	41.668	-0.13553					12	9	2	0	0	0	0.027866	1	3710	3710		26.796	1.3459	1	152340	+		45428	23516	31471	31521	50833	50833					0.0964428139084248
LNRTKATMN	9	Unmodified	_LNRTKATMN_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC;ENST00000502648.5_1_5:112437417-112458501:-|nuORF;ENST00000505604.1_1_5:112437417-112440086:-|nuORF	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7819213867188	2	524.782033	1047.54951	-0.49458	-0.00025955	0.52744	0.00027679	0.032861	1.7245E-05	524.7822200866997	27.813	0.55295	27.894	27.571	28.124	0.081293					42	13	4	0	0	0	0.85329	1	1520	1520		35.618	1.4457	1	1314900			45429	8148	31472	31522	50834	50834					0.02764017314348166
LNRTPANL	8	Unmodified	_LNRTPANL_					0	0	0		nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.75848388671875	2	449.758884	897.503215	-0.53805	-0.00024199	0.0014517	6.5291E-07	-0.5366	-0.00024134	449.75889799941183	44.584	1.398	44.584	44.215	45.613	0					110	40	4	0	0	0	0.6248	1	4298	4298		73.975	2.679	1	13254000			45430	2232	31473	31523	50835	50835					0.05036320474573586
LNRTPANL	8	Unmodified	_LNRTPANL_					0	0	0		nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7591247558594	2	449.758884	897.503215	-0.81742	-0.00036764	0.39944	0.00017965	-0.41798	-0.00018799	449.7590709348939	44.762	1.1944	44.614	44.288	45.483	-0.1488					107	34	4	0	0	0	0.68164	2	4304	4304;4318		68.787	2.9837	1	13532000			45431	2232	31473	31523	50836;50837	50836					0.05036320474573586
LNRYEFFDGEV	11	Unmodified	_LNRYEFFDGEV_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.28460693359375	3	463.55422	1387.64083	-0.15526	-7.197E-05	2.6607	0.0012334	2.5054	0.0011614	463.55530371291934	24.647	0.25868	24.473	24.252	24.511	-0.17484					7	5	2	0	0	0	0.024792	1	1078	1078		13.508	8.6218	1	28198			45432	1956	31474	31524	50838	50838					-0.037484405073428206
LNRYLCLAVL	10	Unmodified	_LNRYLCLAVL_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant;RYR1|p.Q3422Lfs*41|1|0.13|ENSG00000196218|chr19:38523033-38523034|AG/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3441772460938	2	589.341726	1176.6689	-1.3447	-0.00079247	3.1761	0.0018718	1.8315	0.0010794	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.1166	1	12055	12055		30.504	1.3336	1	13724000			45433	9837	31475	31525	50839	50839					0.08763210939059718
LNSCLYYW	8	Unmodified	_LNSCLYYW_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2900390625	2	531.241678	1060.4688	-0.89303	-0.00047442	1.9655	0.0010442	1.0725	0.00056976	531.2443610547768	55.285	0.19935	55.139	55.022	55.221	-0.14609					6	5	2	0	0	0	0.027866	1	5908	5908		17.365	0	1	244210			45434	1432	31476	31526	50840	50840					-0.059012637285604796
LNSDLRRSP	9	Unmodified	_LNSDLRRSP_					0	0	0		nc|ENSG00000166037|Q86XR8-3|CEP57;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57	nc|ENSG00000166037|Q86XR8-3|CEP57	nc|ENSG00000166037|Q86XR8-3|CEP57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3113403320312	2	529.291079	1056.56761	-0.73107	-0.00038695	3.2517	0.0017211	2.5206	0.0013341	529.2940836454505	60.817	0.15946	60.564	60.463	60.623	-0.25373					5	3	2	0	0	0	0.024381	1	6751	6751		29.15	0	1	58564			45435	7499	31477	31527	50841	50841					0.041584755607118495
LNSEKPQTK	9	Unmodified	_LNSEKPQTK_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112501-5112846:+|nuORF	ENSG00000071564|ENST00000262965|TCF3	ENSG00000071564|ENST00000262965|TCF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.3140258789062	2	522.787838	1043.56112	-0.20998	-0.00010978	-2.1224	-0.0011095	-2.3324	-0.0012193	522.7866306602335	32.342	0.20977	32.185	32.035	32.245	-0.15772					6	4	2	0	0	0	0.024374	1	2195	2195		40.778	0	1	45367			45436	1455	31478	31528	50842	50842					0.04108537609317864
LNSERYVH	8	Unmodified	_LNSERYVH_					0	0	0		MGAT4C|p.G113Efs*20|1|0.17|ENSG00000182050|chr12:85980390-85980390|T/-|frameshift_variant;ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C	MGAT4C|p.G113Efs*20|1|0.17|ENSG00000182050|chr12:85980390-85980390|T/-|frameshift_variant	MGAT4C|p.G113Efs*20|1|0.17|ENSG00000182050|chr12:85980390-85980390|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.28912353515625	2	509.259248	1016.50394	-0.25108	-0.00012787	-4.2302	-0.0021542	-4.4812	-0.0022821	509.7578993327125	47.647	0.25714	47.55	47.485	47.743	-0.097553					8	6	2	0	0	0	0.027866	1	4700	4700		47.916	7.1374	1	78748			45437	9094	31479	31529	50843	50843					-0.0036488487637598155
LNSFIQVDA	9	Unmodified	_LNSFIQVDA_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.76092529296875	2	503.763832	1005.51311	-0.020892	-1.0524E-05	-2.9249	-0.0014735	-2.9458	-0.001484	503.76225673956753	47.842	0.8778	47.655	47.279	48.157	-0.18684					40	23	2	0	0	0	0.48817	1	4722	4722		60.118	1.3363	1	1654300			45438	4847	31480	31530	50844	50844					0.010574636892783928
LNSFLTEHQ	9	Unmodified	_LNSFLTEHQ_					0	0	0		ENST00000601957.5_1_19:35433558-35435739:+|nuORF;ENSG00000168661|ENST00000601142|ZNF30;nc|ENSG00000168661|P17039-2|ZNF30;ZNF30|p.R588Q|1|0.38|ENSG00000168661|chr19:34944729-34944729|G/A|missense_variant	ENST00000601957.5_1_19:35433558-35435739:+|nuORF	ENST00000601957.5_1_19:35433558-35435739:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8135375976562	2	544.772188	1087.52982	-0.20431	-0.0001113	-3.6819	-0.0020058	-3.8862	-0.0021171	544.7701809103204	92.806	1.0171	92.684	92.261	93.278	-0.12242					34	23	2	0	0	0	0.024405	1	11494	11494		44.117	9.9443	1	60852			45439	7851	31481	31531	50845	50845					-0.010440354247748473
LNSFQNFTR	9	Unmodified	_LNSFQNFTR_					0	0	0			REV__ENSG00000197372|ENST00000359788|ZNF675	REV__ENSG00000197372|ENST00000359788|ZNF675	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2776489257812	2	563.78563	1125.55671	0.15397	8.6807E-05	2.2767	0.0012836	2.4307	0.0013704	563.7867411750303	90.592	0.70818	90.454	90.116	90.825	-0.13824					30	15	3	0	0	0	0.024438	1	11120	11120		22.58	0	1	639440	+		45440	28297	31482	31532	50846	50846					-0.0010492681358300615
LNSFTMAKV	9	Unmodified	_LNSFTMAKV_					0	0	0			REV__ENST00000464235.5_1_13:37576413-37578626:+|nuORF	REV__ENST00000464235.5_1_13:37576413-37578626:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.27716064453125	2	505.770603	1009.52665	-0.65056	-0.00032904	-2.2143	-0.0011199	-2.8649	-0.001449	505.7689771045331	57.446	0.6147	57.277	57.069	57.684	-0.16896					26	15	3	0	0	0	0.024435	1	6242	6242		50.034	26.991	1	962950	+		45441	32966	31483	31533	50847	50847					0.02226998196886143
LNSFTMAKV	9	Unmodified	_LNSFTMAKV_					0	0	0			REV__ENST00000464235.5_1_13:37576413-37578626:+|nuORF	REV__ENST00000464235.5_1_13:37576413-37578626:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.770603	1009.52665	0.035345	1.7877E-05	-3.1524	-0.0015944	-3.1171	-0.0015765	505.7686532668584	57.454	0.52247	57.252	57.064	57.587	-0.20208	-0.038289	-0.00057339	NaN	47.228	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1113700	+		45442	32966	31483	31533							0.02226998196886143
LNSFTMAKV	9	Unmodified	_LNSFTMAKV_					0	0	0			REV__ENST00000464235.5_1_13:37576413-37578626:+|nuORF	REV__ENST00000464235.5_1_13:37576413-37578626:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.770603	1009.52665	-0.8092	-0.00040927	-2.2833	-0.0011548	-3.0925	-0.0015641	505.7689798226464	57.576	0.48802	57.342	57.095	57.583	-0.23363	0.05167	0.00030576	NaN	47.228	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	916950	+		45443	32966	31483	31533							0.02226998196886143
LNSGGKKGDL	10	Unmodified	_LNSGGKKGDL_					0	0	0			REV__ENSG00000182473|ENST00000589210|EXOC7	REV__ENSG00000182473|ENST00000589210|EXOC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7762145996094	2	494.774731	987.534909	0.32525	0.00016092	3.8165	0.0018883	4.1417	0.0020492	494.7764791055983	52.479	0.69104	52.332	51.915	52.607	-0.14723					33	17	2	0	0	0	0.83673	1	5607	5607		58.23	1.5089	1	1466900	+		45444	27478	31484	31534	50848	50848					0.04064268437866758
LNSIQAPHPV	10	Unmodified	_LNSIQAPHPV_					0	0	0		nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000080224|Q9UF33-3|EPHA6;nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6	nc|ENSG00000080224|Q9UF33-2|EPHA6	nc|ENSG00000080224|Q9UF33-2|EPHA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7991943359375	2	538.298373	1074.58219	-0.10096	-5.4348E-05	-0.58917	-0.00031715	-0.69014	-0.0003715	538.7988023463336	88.512	0.89118	88.512	88.003	88.894	0					54	20	4	0	0	0	0.61732	1	11170	11170		75.043	6.2565	1	979620			45445	1683	31485	31535	50849	50849					0.04788547708835722
LNSKVHLI	8	Unmodified	_LNSKVHLI_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7978515625	2	462.287277	922.560001	0.97708	0.00045169	-0.4906	-0.0002268	0.48648	0.00022489	462.28683102434945	58.808	0.73322	58.895	58.367	59.1	0.08696					37	19	3	0	0	0	0.027866	1	6574	6574		26.796	2.5934	1	452970	+		45446	26572	31486	31536	50850	50850					0.09562368031106416
LNSKWLSLK	9	Unmodified	_LNSKWLSLK_					0	0	0		nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.8275756835938	2	544.826766	1087.63898	-0.67663	-0.00036865	0.36425	0.00019845	-0.31238	-0.00017019	544.82687711852	61.6	0.71936	61.6	61.255	61.974	0					43	18	3	0	0	0	0.32064	1	7133	7133		72.879	0	1	1396800			45447	18670	31487	31537	50851	50851					0.09866595265361866
LNSKWLSLK	9	Unmodified	_LNSKWLSLK_					0	0	0		nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.826766	1087.63898	-0.35904	-0.00019562	-0.33173	-0.00018074	-0.69078	-0.00037635	544.8266260295323	61.812	0.71678	61.585	61.298	62.015	-0.22663	-0.0082091	-0.00048641	NaN	72.879	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1299200			45448	18670	31487	31537							0.09866595265361866
LNSKWLSLK	9	Unmodified	_LNSKWLSLK_					0	0	0		nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	nc|ENSG00000205464|Q52LC2|ATP6AP1L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.826766	1087.63898	-0.76196	-0.00041514	0.21748	0.00011849	-0.54448	-0.00029665	544.8268428317226	61.523	0.68018	61.595	61.276	61.956	0.071129	0.0011583	0.00011205	NaN	72.879	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1203700			45449	18670	31487	31537							0.09866595265361866
LNSLMVKCP	9	Unmodified	_LNSLMVKCP_					0	0	0		ENSG00000166349|ENST00000299440|RAG1;nc|ENSG00000166349|P15918-2|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7908020019531	2	502.767006	1003.51946	-0.61424	-0.00030882	1.7152	0.00086237	1.101	0.00055355	502.76897190147747	62.415	0.59152	62.157	61.82	62.411	-0.25824					35	14	5	0	0	0	0.024319	1	7040	7040		47.657	10.498	1	877680			45450	7546	31488	31538	50852	50852					0.017839423248005915
LNSLMVKCP	9	Unmodified	_LNSLMVKCP_					0	0	0		ENSG00000166349|ENST00000299440|RAG1;nc|ENSG00000166349|P15918-2|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.767006	1003.51946	-0.1739	-8.7432E-05	0.38734	0.00019474	0.21344	0.00010731	502.76834931291717	62.328	0.90803	62.114	61.375	62.283	-0.21375	0.0041154	-0.0036808	NaN	56.721	47	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995310			45451	7546	31488	31538							0.017839423248005915
LNSLQLVSEW	10	Unmodified	_LNSLQLVSEW_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.8189086914062	2	594.816596	1187.61864	0.20521	0.00012206	3.2086	0.0019085	3.4138	0.0020306	594.8184958173847	99.585	1.0446	99.461	98.711	99.755	-0.12459					65	27	4	0	0	0	1.0616	1	12381	12381		37.812	5.8567	1	503600			45452	3505	31489	31539	50853	50853					0.03233379814901127
LNSLRKLN	8	Unmodified	_LNSLRKLN_					0	0	0			REV__MACC1|p.P507Q|1|0.34|ENSG00000183742|chr7:20158841-20158841|G/T|missense_variant	REV__MACC1|p.P507Q|1|0.34|ENSG00000183742|chr7:20158841-20158841|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.29547119140625	2	479.295633	956.576714	0.30053	0.00014404	-0.44052	-0.00021114	-0.13999	-6.7097E-05	479.29531281550055	24.41	0.85894	24.195	23.733	24.592	-0.2151					52	19	4	0	0	0	0.59392	1	1067	1067		76.847	5.5509	1	2213900	+		45453	27602	31490	31540	50854	50854					0.0966886891702643
LNSLRKLN	8	Unmodified	_LNSLRKLN_					0	0	0			REV__MACC1|p.P507Q|1|0.34|ENSG00000183742|chr7:20158841-20158841|G/T|missense_variant	REV__MACC1|p.P507Q|1|0.34|ENSG00000183742|chr7:20158841-20158841|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2953796386719	2	479.295633	956.576714	2.1984	0.0010537	-2.26	-0.0010832	-0.061572	-2.9511E-05	479.29443333037256	24.273	0.8751	24.092	23.715	24.59	-0.18089					47	19	4	0	0	0	0.33369	2	1017	1006;1017		106.42	8.3303	1	1922100	+		45454	27602	31490	31540	50855;50856	50856					0.0966886891702643
LNSLRKLN	8	Unmodified	_LNSLRKLN_					0	0	0			REV__MACC1|p.P507Q|1|0.34|ENSG00000183742|chr7:20158841-20158841|G/T|missense_variant	REV__MACC1|p.P507Q|1|0.34|ENSG00000183742|chr7:20158841-20158841|G/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	479.295633	956.576714	0.30053	0.00014404	-0.44052	-0.00021114	-0.13999	-6.7097E-05	479.29531281550055	24.41	0.85894	24.195	23.733	24.592	-0.2151	0.080726	0.00039284	NaN	106.42	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2213900	+		45455	27602	31490	31540							0.0966886891702643
LNSLRLYKKKK	11	Unmodified	_LNSLRLYKKKK_					0	0	0			REV__ENST00000376510.7_1_10:23409918-23410092:+|nuORF	REV__ENST00000376510.7_1_10:23409918-23410092:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.3009033203125	3	464.301278	1389.882	0.13971	6.4869E-05	-3.9526	-0.0018352	-3.8129	-0.0017703	464.2992863087391	106.17	0.68498	106.16	105.92	106.6	-0.0013199					40	21	3	0	0	0	1.1092	1	13583	13583		8.7993	0.39205	1	651300	+		45456	31356	31491	31541	50857	50857					0.20265839990383938
LNSNATFLS	9	Unmodified	_LNSNATFLS_					0	0	0			REV__TRPC4|p.H501N|1|0.15|ENSG00000133107|chr13:37663603-37663603|G/T|missense_variant	REV__TRPC4|p.H501N|1|0.15|ENSG00000133107|chr13:37663603-37663603|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7481689453125	2	483.748182	965.481811	-0.15459	-7.4781E-05	0.9903	0.00047905	0.83571	0.00040427	483.7485057417841	68.501	0.98721	68.501	68.179	69.166	0					61	25	3	0	0	0	0.6504	1	8233	8233		49.442	1.7842	1	3879100	+		45457	37735	31492	31542	50858	50858					-0.002311093448156498
LNSNVLLW	8	Unmodified	_LNSNVLLW_					0	0	0		nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;NLGN4Y-VAMP7|1|fusion;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;NLGN4X|p.W127Cfs*9|1|0.21|ENSG00000146938|chrX:6151086-6151086|C/-|frameshift_variant	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.77178955078125	2	479.77146	957.528367	-0.045903	-2.2023E-05	0.40215	0.00019294	0.35625	0.00017092	479.771425577564	88.562	1.0437	88.43	88.032	89.076	-0.13135					64	24	4	0	0	0	0.56592	1	10789	10789		79.451	8.0731	1	1798700			45458	5921	31493	31543	50859	50859					0.047903752771503605
LNSNVLLW	8	Unmodified	_LNSNVLLW_					0	0	0		nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;NLGN4Y-VAMP7|1|fusion;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;NLGN4X|p.W127Cfs*9|1|0.21|ENSG00000146938|chrX:6151086-6151086|C/-|frameshift_variant	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7711486816406	2	479.77146	957.528367	0.32479	0.00015583	-0.071938	-3.4514E-05	0.25285	0.00012131	479.77121942885924	88.559	1.2113	88.422	88.105	89.316	-0.13744					73	28	4	0	0	0	0.27193	1	10783	10783		123.99	21.215	1	1951000			45459	5921	31493	31543	50860	50860					0.047903752771503605
LNSPKLKP	8	Unmodified	_LNSPKLKP_					0	0	0		ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000414513.7_1_X:2536701-2544672:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7840881347656	2	448.781828	895.549102	0.32739	0.00014693	3.9618	0.001778	4.2892	0.0019249	448.7835949324866	101.07	0.77135	101.06	100.76	101.53	-0.0054474					39	17	4	0	0	0	0.77775	1	12859	12859		60.972	13.056	1	402600			45460	13862	31494	31544	50861	50861					0.09714965656803543
LNSPKLKP	8	Unmodified	_LNSPKLKP_					0	0	0		ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000414513.7_1_X:2536701-2544672:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	448.781828	895.549102	0.072954	3.274E-05	4.3217	0.0019395	4.3946	0.0019722	448.78372873485154	100.94	0.64117	100.95	100.7	101.34	0.0090332	-0.054127	0.00012668	NaN	60.972	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344100			45461	13862	31494	31544							0.09714965656803543
LNSRELYFAR	10	Unmodified	_LNSRELYFAR_					0	0	0			REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.8399658203125	2	634.840936	1267.66732	-0.55219	-0.00035056	-1.7035	-0.0010814	-2.2556	-0.001432	634.839721133992	17.502	0.4482	17.295	17.116	17.564	-0.20669					17	8	3	0	0	0	1.1311	1	180	180		17.468	0	1	102940	+		45462	22733	31495	31545	50862	50862					0.04419293174669292
LNSRPSIL	8	Unmodified	_LNSRPSIL_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.74310302734375	2	450.269084	898.523616	-0.20669	-9.3066E-05	0.0884	3.9804E-05	-0.11829	-5.3262E-05	450.2691201060402	27.147	0.9288	27.134	26.911	27.84	-0.012981					41	24	3	0	0	0	0.027866	1	1445	1445		26.796	0	1	232120	+		45463	20469	31496	31546	50863	50863					0.07029491134380805
LNSRYNLNI	9	Unmodified	_LNSRYNLNI_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547226.5_1_12:56711395-56716647:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.77880859375	2	553.80128	1105.58801	-0.85381	-0.00047284	4.2292	0.0023421	3.3754	0.0018693	553.8030867516545	62.632	0.71621	62.632	62.409	63.126	0					23	17	2	0	0	0	0.024261	1	7281	7281		64.207	7.7735	1	642720			45464	4901	31497	31547	50864	50864					0.03943646220500341
LNSSLKKP	8	Unmodified	_LNSSLKKP_					0	0	0		ENST00000285968.10_1_7:135258489-135261062:+|nuORF	ENST00000285968.10_1_7:135258489-135261062:+|nuORF	ENST00000285968.10_1_7:135258489-135261062:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.279541015625	2	443.77146	885.528367	0.37271	0.0001654	0.6627	0.00029409	1.0354	0.00045949	443.77180145413445	54.617	0.20843	54.715	54.525	54.733	0.098015					10	5	2	0	0	0	0.027866	1	5909	5909		30.504	0	1	336590			45465	11755	31498	31548	50865	50865					0.08102375277155716
LNSSLTISE	9	Unmodified	_LNSSLTISE_					0	0	0			REV__GPI-EYS|2|fusion	REV__GPI-EYS|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2792053222656	2	482.253297	962.492041	-0.54464	-0.00026265	-1.5163	-0.00073126	-2.061	-0.00099391	482.2517700026662	82.005	1.3681	82.03	81.29	82.658	0.025711					46	32	2	0	0	0	0.024466	1	10176	10176		24.519	0	1	82190	+		45466	36078	31499	31549	50866	50866					0.009294535897765854
LNSTLSKVPE	10	Unmodified	_LNSTLSKVPE_					0	0	0			REV__ENSG00000163618|ENST00000383710|CADPS	REV__ENSG00000163618|ENST00000383710|CADPS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.8214721679688	2	544.303321	1086.59209	0.87577	0.00047668	3.0852	0.0016793	3.9609	0.002156	544.3041392668928	98.847	0.48601	98.722	98.504	98.99	-0.12447					17	11	3	0	0	0	0.03519	1	12245	12245		39.253	0	1	56800	+		45467	25601	31500	31550	50867	50867					0.052256909235893545
LNSTSHKI	8	Unmodified	_LNSTSHKI_					0	0	0		nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L	nc|ENSG00000290796|A4QPB2-2|LRP5L	nc|ENSG00000290796|A4QPB2-2|LRP5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.25091552734375	2	450.250892	898.48723	-0.33542	-0.00015102	0.67092	0.00030208	0.3355	0.00015106	450.2509766804257	35.32	0.88397	35.364	35.014	35.898	0.04406					80	22	5	0	0	0	0.81662	1	2678	2678		57.811	2.3071	1	2161000			45468	18829	31501	31551	50868	50868					0.03392614237657199
LNTDDPLIFK	10	Unmodified	_LNTDDPLIFK_					0	0	0		ENST00000464097.5_1_20:43249631-43251634:-|nuORF;ENST00000492931.5_1_20:43248477-43251634:-|nuORF;ENSG00000196839|ENST00000372874|ADA	ENST00000464097.5_1_20:43249631-43251634:-|nuORF	ENST00000464097.5_1_20:43249631-43251634:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.319580078125	2	588.318971	1174.62339	-1.757	-0.0010337	2.6515	0.0015599	0.89453	0.00052627	588.3203909187872	21.599	0.7264	21.386	21.118	21.845	-0.2128					41	14	4	0	0	0	0.88978	1	665	665		54.722	3.3869	1	418220			45469	9926	31502	31552	50869	50869					0.043062639576419315
LNTDWPAL	8	Unmodified	_LNTDWPAL_					0	0	0		ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	ENSG00000072682|ENST00000360568|P4HA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.26873779296875	2	465.239993	928.465432	0.54545	0.00025377	0.41257	0.00019195	0.95802	0.00044571	465.24071833370766	66.032	0.15348	66.062	65.968	66.121	0.030106					5	3	2	0	0	0	0.027866	1	7769	7769		33.516	0	1	129600			45470	1485	31503	31553	50870	50870					-0.0016619051090174253
LNTFCTRLSR	10	Unmodified	_LNTFCTRLSR_					0	0	0			REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|76	REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|76	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.21826171875	3	404.216885	1209.62883	-0.029885	-1.208E-05	3.4274	0.0013854	3.3975	0.0013733	404.21827196086645	57.238	1.0137	57.071	56.751	57.764	-0.1672					88	26	5	0	0	0	1.0896	1	6244	6244		34.087	2.4522	1	13924000	+		45471	19369	31504	31554	50871	50871					0.032396642684716426
LNTFDKSSGE	10	Unmodified	_LNTFDKSSGE_					0	0	0		nc|ENSG00000135903|P23760-8|PAX3	nc|ENSG00000135903|P23760-8|PAX3	nc|ENSG00000135903|P23760-8|PAX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.3258056640625	2	549.259111	1096.50367	0.19489	0.00010705	1.0422	0.00057244	1.2371	0.00067948	549.2604822110375	81.071	0.61479	80.865	80.667	81.282	-0.20633					20	14	2	0	0	0	0.03519	1	9785	9785		27.047	1.4733	1	141250			45472	18300	31505	31555	50872	50872					-0.04072349386888163
LNTGSYYEH	9	Unmodified	_LNTGSYYEH_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.30029296875	2	542.240721	1082.46689	-1.3036	-0.00070685	-2.3208	-0.0012584	-3.6244	-0.0019653	542.2394113024019	64.856	0.56242	64.893	64.555	65.117	0.037384					32	14	3	0	0	0	0.024323	1	7547	7547		53.351	1.8237	1	420160			45473	7278	31506	31556	50873	50873					-0.07104601212813577
LNTGSYYEH	9	Unmodified	_LNTGSYYEH_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.240721	1082.46689	-1.5762	-0.00085469	-2.6761	-0.0014511	-4.2523	-0.0023058	542.2391995195563	65.273	0.77293	65.071	64.617	65.39	-0.20254	0.1017	0.00026032	NaN	53.351	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542250			45474	7278	31506	31556							-0.07104601212813577
LNTIWLPRA	9	Unmodified	_LNTIWLPRA_					0	0	0			REV__ENSG00000185798|ENST00000332629|WDR53	REV__ENSG00000185798|ENST00000332629|WDR53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.30029296875	2	542.319109	1082.62366	-1.3628	-0.00073909	1.4035	0.00076116	0.040707	2.2076E-05	542.3203533148969	64.723	0.33743	64.769	64.715	65.053	0.045502					12	8	2	0	0	0	0.019436	1	7547	7547		118.74	43.7	1	193760	+		45475	27797	31507	31557	50874	50874					0.08565728468170164
LNTKRYLLI	9	Unmodified	_LNTKRYLLI_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.755126953125	2	567.355691	1132.69683	-0.22937	-0.00013013	0.34634	0.0001965	0.11697	6.6363E-05	567.3558089887152	60.831	0.55023	60.625	60.378	60.928	-0.20599					22	13	2	0	0	0	0.024427	1	6807	6807		42.396	0	1	242130			45476	9713	31508	31558	50875	50875					0.13578857190805138
LNTLEGPEL	9	Unmodified	_LNTLEGPEL_					0	0	0			REV__nc|ENSG00000186086|Q5VWK0-2|NBPF6	REV__nc|ENSG00000186086|Q5VWK0-2|NBPF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2633056640625	2	493.263665	984.512776	0.90884	0.0004483	-0.93341	-0.00046042	-0.024572	-1.2121E-05	493.2632028296755	71.047	1.3707	71.047	70.569	71.94	0					95	34	5	0	0	0	0.17822	1	8589	8589		93.195	0	1	11696000	+		45477	37023	31509	31559	50876	50876					0.01990043969431099
LNTLEGPEL	9	Unmodified	_LNTLEGPEL_					0	0	0			REV__nc|ENSG00000186086|Q5VWK0-2|NBPF6	REV__nc|ENSG00000186086|Q5VWK0-2|NBPF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2618103027344	2	493.263665	984.512776	-0.011324	-5.586E-06	0.12152	5.9939E-05	0.11019	5.4353E-05	493.26372478067407	71.143	1.5242	71.154	70.465	71.989	0.010735					97	38	4	0	0	0	0.14024	2	8508	8508;8528		101.6	8.4052	1	11193000	+		45478	37023	31509	31559	50877;50878	50877					0.01990043969431099
LNTLLKQL	8	Unmodified	_LNTLLKQL_					0	0	0		nc|ENSG00000242715|A6NNP5-5|CCDC169;ENSG00000242715|ENST00000239859|CCDC169;nc|ENSG00000242715|A6NNP5-3|CCDC169;nc|ENSG00000242715|A6NNP5-6|CCDC169;nc|ENSG00000242715|A6NNP5-4|CCDC169;nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000242715|A6NNP5-5|CCDC169;nc|ENSG00000120669|Q9NX45-3|SOHLH2	nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.8065490722656	2	471.80276	941.590967	0.13382	6.3136E-05	0.25626	0.0001209	0.39008	0.00018404	471.8025992737434	56.096	0.91352	55.94	55.666	56.58	-0.15601					57	24	4	0	0	0	0.37096	1	6202	6202		101.25	8.0572	1	3200000			45479	18216;10800	31510	31560	50879	50879					0.11783521345330428
LNTLQENVN	9	Unmodified	_LNTLQENVN_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3255615234375	2	522.769645	1043.52474	-0.39057	-0.00020418	-0.5683	-0.00029709	-0.95887	-0.00050127	522.7692676091804	82.113	0.53924	82.139	81.819	82.358	0.025711					23	12	3	0	0	0	0.024495	1	10136	10136		19.997	0	1	159920			45480	4060	31511	31561	50880	50880					0.004716607126283634
LNTLQRMH	8	Unmodified	_LNTLQRMH_					0	0	0		ENST00000337248.8_1_1:24706183-24710435:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.77099609375	2	506.771468	1011.52838	-0.55085	-0.00027916	0.10763	5.4546E-05	-0.44322	-0.00022461	506.77141411605925	20.574	1.064	20.47	19.981	21.045	-0.10477					54	21	3	0	0	0	1.043	1	571	571		30.504	0.18592	1	533810			45481	12417	31512	31562	50881	50881					0.023080520054918452
LNTPGAKV	8	Unmodified	_LNTPGAKV_					0	0	0		nc|ENSG00000293543|Q6B8I1|DUSP13A	nc|ENSG00000293543|Q6B8I1|DUSP13A	nc|ENSG00000293543|Q6B8I1|DUSP13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8875732421875	2	400.237253	798.459953	1.8423	0.00073737	-1.3343	-0.00053405	0.508	0.00020332	400.2365609953266	30.116	0.6659	30.19	29.92	30.586	0.074314					24	15	2	0	0	0	0.027866	1	1885	1885		31.955	9.995	1	186760			45482	18848	31513	31563	50882	50882					0.052661306972822786
LNTQHILLL	9	Unmodified	_LNTQHILLL_					0	0	0		ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;nc|ENSG00000180638|Q86VL8-6|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.82666015625	2	532.826766	1063.63898	-0.65105	-0.0003469	0.37585	0.00020026	-0.2752	-0.00014663	532.8268568603145	76.425	0.64833	76.425	76.071	76.719	0					40	15	3	0	0	0	0.16468	1	9409	9409		96.19	5.4138	1	1323900			45483	5563	31514	31564	50883	50883					0.10970595265393968
LNTQHILLL	9	Unmodified	_LNTQHILLL_					0	0	0		ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;nc|ENSG00000180638|Q86VL8-6|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8263549804688	2	532.826766	1063.63898	-0.79864	-0.00042554	0.49459	0.00026353	-0.30405	-0.00016201	532.8269153738183	76.605	0.77119	76.377	76.041	76.813	-0.22843					46	18	3	0	0	0	0.072054	1	9403	9403		120.62	3.7174	1	1504600			45484	5563	31514	31564	50884	50884					0.10970595265393968
LNTQHILLL	9	Unmodified	_LNTQHILLL_					0	0	0		ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;nc|ENSG00000180638|Q86VL8-6|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.826766	1063.63898	-0.067116	-3.5761E-05	-0.38138	-0.00020321	-0.44849	-0.00023897	532.8264540012506	76.414	0.76699	76.426	76.09	76.857	0.011635	0.016605	-0.00053165	NaN	120.62	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1539500			45485	5563	31514	31564							0.10970595265393968
LNTRRKVDWL	10	Unmodified	_LNTRRKVDWL_					0	0	0		ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF	ENST00000492144.5_1_3:186503809-186505672:+|nuORF	ENST00000492144.5_1_3:186503809-186505672:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7799987792969	3	434.254328	1299.74115	0.13509	5.8662E-05	0.1158	5.0286E-05	0.25088	0.00010895	434.25425437814533	46.775	0.37202	46.826	46.615	46.987	0.051395					18	9	3	0	0	0	0.03519	1	4604	4604		28.081	0	1	73895			45486	6564	31515	31565	50885	50885					0.10327261336988158
LNTTARINS	9	Unmodified	_LNTTARINS_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.29730224609375	2	495.272355	988.530158	0.016296	8.0708E-06	-0.99178	-0.0004912	-0.97548	-0.00048313	495.27286059482174	54.475	0.39214	54.325	54.017	54.409	-0.15036					14	10	2	0	0	0	0.024477	1	5925	5925		20.947	0	1	286570	+		45487	37546	31516	31566	50886	50886					0.03543384295085161
LNTVTKFKIW	10	Unmodified	_LNTVTKFKIW_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	624.8777465820312	2	625.368798	1248.72304	0.48676	0.00030441	-3.8014	-0.0023773	-3.3146	-0.0020729	625.3662595475936	106	0.20773	106	105.82	106.03	0					13	8	2	0	0	0	0.03519	1	13613	13613		35.618	8.9254	1	70479	+		45488	25017	31517	31567	50887	50887					0.10863126362278308
LNTVTKFKIW	10	Unmodified	_LNTVTKFKIW_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	625.3670043945312	2	625.368798	1248.72304	-0.35092	-0.00021946	-2.9635	-0.0018533	-3.3144	-0.0020727	625.3666955724143	105.32	0.42418	105.32	105.09	105.52	-0.0015945					29	12	3	0	0	0	1.0393	1	13434	13434		40.778	4.3314	1	1686700	+		45489	25017	31517	31567	50888	50888					0.10863126362278308
LNTVTKFKIW	10	Unmodified	_LNTVTKFKIW_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	624.3756103515625	2	625.368798	1248.72304	-0.37778	-0.00023625	-2.2317	-0.0013957	-2.6095	-0.0016319	625.3668290110578	105.99	0.39375	105.99	105.81	106.21	0.00015259					27	14	3	0	0	0	0.03519	1	13530	13530		44.377	1.981	1	257180	+		45490	25017	31517	31567	50889	50889					0.10863126362278308
LNTYRVLR	8	Unmodified	_LNTYRVLR_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.80859375	2	517.808908	1033.60326	-0.57012	-0.00029521	0.13532	7.0068E-05	-0.4348	-0.00022514	517.8088128483726	37.973	0.85992	37.794	37.522	38.381	-0.17929					46	24	3	0	0	0	0.96769	1	3097	3097		42.396	1.8235	1	2910400			45491	10594	31518	31568	50890	50890					0.08780557808381673
LNVANRLAS	9	Unmodified	_LNVANRLAS_					0	0	0			REV__nc|ENSG00000125675|P42263|GRIA3	REV__nc|ENSG00000125675|P42263|GRIA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2774353027344	2	479.277441	956.540328	0.1691	8.1046E-05	-0.42382	-0.00020313	-0.25472	-0.00012208	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.77768	1	9745	9745		40.778	6.6056	1	1990900	+		45492	36636	31519	31569	50891	50891					0.060319920203255606
LNVCLQLK	8	Unmodified	_LNVCLQLK_					0	0	0			REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7771911621094	2	465.775688	929.536823	-0.18378	-8.5601E-05	3.4358	0.0016003	3.252	0.0015147	465.7770589296706	81.53	4.4485	81.399	79.15	83.599	-0.13075					270	106	3	0	0	0	1.0574	1	10032	10032		26.796	0	1	1253000	+		45493	34757	31520	31570	50892	50892					0.06923605922122533
LNVDGKMGSP	10	Unmodified	_LNVDGKMGSP_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2922668457031	2	509.255317	1016.49608	-0.073479	-3.742E-05	0.82504	0.00042016	0.75157	0.00038274	509.25575126912054	52.31	0.72377	52.163	51.642	52.366	-0.14735					39	19	5	0	0	0	0.03519	1	5564	5564		39.253	8.7492	1	917040	+		45494	22258	31521	31571	50893	50893					-0.011507801881521118
LNVDKGKSKG	10	Unmodified	_LNVDKGKSKG_					0	0	0			REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF	REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3038940429688	2	523.303655	1044.59276	-0.50892	-0.00026632	0.8433	0.0004413	0.33437	0.00017498	523.3039441520884	90.238	1.1068	90.113	89.805	90.912	-0.12513					64	26	4	0	0	0	1.1266	1	11033	11033		29.17	0	1	1517700	+		45495	25456	31522	31572	50894	50894					0.07224530363305348
LNVDPQLN	8	Unmodified	_LNVDPQLN_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.781005859375	2	456.742899	911.471246	-1.1202	-0.00051162	1.366	0.0006239	0.24582	0.00011228	456.74329623624374	49.174	0.85043	49.248	48.842	49.693	0.074192					39	22	3	0	0	0	0.027866	1	4991	4991		20.947	0	1	518720	+		45496	27181	31523	31573	50895	50895					0.011969080007588673
LNVEQLSPD	9	Unmodified	_LNVEQLSPD_					0	0	0			REV__ENST00000561300.1_1_15:52073311-52075052:+|nuORF	REV__ENST00000561300.1_1_15:52073311-52075052:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2853698730469	2	507.758746	1013.50294	-0.46259	-0.00023489	2.5117	0.0012754	2.0491	0.0010405	508.2618308547093	30.765	0.75176	30.839	30.42	31.171	0.074314					37	17	3	0	0	0	0.024381	1	1933	1933		37.159	0	1	475400	+		45497	23013	31524	31574	50896	50896					-0.003271440359412736
LNVEWLVP	8	Unmodified	_LNVEWLVP_					0	0	0		ENSG00000162391|ENST00000302250|FAM151A	ENSG00000162391|ENST00000302250|FAM151A	ENSG00000162391|ENST00000302250|FAM151A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7477722167969	2	485.273835	968.533118	0.31977	0.00015518	-0.71682	-0.00034785	-0.39705	-0.00019268	485.27314090555717	69.894	0.73703	69.671	69.39	70.127	-0.22245					25	17	2	0	0	0	0.027866	1	8143	8143		50.025	0	1	336150			45498	6935	31525	31575	50897	50897					0.04759259419904538
LNVFEATLGE	10	Unmodified	_LNVFEATLGE_					0	0	0			REV__ENST00000473205.1_1_9:100746884-100764563:+|nuORF	REV__ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.3137817382812	2	546.782222	1091.54989	-1.1574	-0.00063285	1.1776	0.00064389	0.020184	1.1036E-05	546.7825916912824	46.035	0.70198	45.833	45.528	46.23	-0.20226					39	18	4	0	0	0	0.03519	1	4351	4351		49.442	0	1	663430	+		45499	23711	31526	31576	50898	50898					0.007777155151870829
LNVFGLRSI	9	Unmodified	_LNVFGLRSI_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.80377197265625	2	509.805834	1017.59712	-0.39701	-0.0002024	-3.7604	-0.0019171	-4.1574	-0.0021195	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	0.70156	1	10613	10613		45.972	6.7194	1	3182000			45500	4085	31527	31577	50899	50899					0.08902039576844345
LNVFLPNNKW	10	Unmodified	_LNVFLPNNKW_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	623.2901000976562	2	622.842948	1243.67134	0.22972	0.00014308	-3.6649	-0.0022826	-3.4352	-0.0021396	622.8406492609331	45.643	0.48416	45.546	45.257	45.741	-0.096649					36	13	3	0	0	0	0.03519	1	4364	4364		40.778	6.8565	1	1478500	+		45501	25866	31528	31578	50900	50900					0.05925382668374368
LNVFLPNNKW	10	Unmodified	_LNVFLPNNKW_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	623.2913208007812	2	622.842948	1243.67134	-1.1825	-0.00073651	-2.266	-0.0014114	-3.4485	-0.0021479	622.8415732233452	45.873	0.68948	45.612	45.317	46.006	-0.26118					44	18	3	0	0	0	0.03519	1	4373	4373		49.442	0	1	1935100	+		45502	25866	31528	31578	50901	50901					0.05925382668374368
LNVFRELEV	9	Unmodified	_LNVFRELEV_					0	0	0			REV__ENSG00000165355|ENST00000298097|FBXO33	REV__ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2176513671875	2	559.813856	1117.61316	-0.9027	-0.00050535	3.6541	0.0020456	2.7514	0.0015403	559.8153618823524	43.827	0.55943	43.582	43.344	43.904	-0.2444					30	14	3	0	0	0	0.024466	1	4056	4056		39.253	3.6345	1	633470			45503	25877	31529	31579	50902	50902					0.05905701023107213
LNVFRKLAR	9	Unmodified	_LNVFRKLAR_					0	0	0			REV__ENSG00000106266|ENST00000222990|SNX8	REV__ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3499145507812	2	558.85365	1115.69275	-0.24603	-0.00013749	-3.4502	-0.0019282	-3.6963	-0.0020657	558.8516716737059	50.16	1.1526	50.009	49.407	50.559	-0.1512					65	32	3	0	0	0	0.024381	1	5204	5204		15.642	0	1	3015100	+		45504	21605	31530	31580	50903	50903					0.13952812487764277
LNVGFRPLV	9	Unmodified	_LNVGFRPLV_					0	0	0			REV__ENST00000416202.5_1_22:46452749-46452818:+|nuORF	REV__ENST00000416202.5_1_22:46452749-46452818:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.80462646484375	2	507.808377	1013.6022	-0.18856	-9.5754E-05	-3.5994	-0.0018278	-3.788	-0.0019236	507.80640555696993	34.336	0.82064	34.332	33.948	34.769	-0.0045624					44	20	3	0	0	0	0.40179	1	2567	2567		65.803	0	1	3274500	+		45505	32071	31531	31581	50904	50904					0.09594343439459863
LNVGGFKQS	9	Unmodified	_LNVGGFKQS_					0	0	0		ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.79229736328125	2	475.258717	948.50288	0.52799	0.00025093	3.9075	0.0018571	4.4355	0.002108	475.26041189333404	49.956	0.64032	49.805	49.52	50.16	-0.1512					29	17	2	0	0	0	0.024344	1	5221	5221		37.812	0	1	166500			45506	8073	31532	31582	50905	50905					0.026569007547209367
LNVHFGGGL	9	Unmodified	_LNVHFGGGL_					0	0	0			REV__nc|ENSG00000185024|Q92994-6|BRF1	REV__nc|ENSG00000185024|Q92994-6|BRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2710876464844	2	457.248152	912.481751	-0.3392	-0.0001551	3.1085	0.0014213	2.7693	0.0012662	457.249386998865	43.445	0.72407	43.306	42.921	43.645	-0.13929					30	19	2	0	0	0	0.024293	1	4052	4052		33.516	0	1	110500	+		45507	27724	31533	31583	50906	50906					0.022009354458646158
LNVHQVHNS	9	Unmodified	_LNVHQVHNS_					0	0	0		PAPPA2|p.S568N|1|0.2|ENSG00000116183|chr1:176595307-176595307|G/A|missense_variant	PAPPA2|p.S568N|1|0.2|ENSG00000116183|chr1:176595307-176595307|G/A|missense_variant	PAPPA2|p.S568N|1|0.2|ENSG00000116183|chr1:176595307-176595307|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2725830078125	2	524.270147	1046.52574	-1.296	-0.00067947	-2.0956	-0.0010987	-3.3916	-0.0017781	524.7715190724037	62.833	0.12236	62.594	62.492	62.615	-0.23926					4	2	2	0	0	0	0.024495	1	7292	7292		19.997	9.7315	1	126740			45508	18940	31534	31584	50907	50907					0.004339198721709181
LNVIFEKIP	9	Unmodified	_LNVIFEKIP_					0	0	0		PLXNC1|p.V1204I|1|0.31|ENSG00000136040|chr12:94279484-94279484|G/A|missense_variant	PLXNC1|p.V1204I|1|0.31|ENSG00000136040|chr12:94279484-94279484|G/A|missense_variant	PLXNC1|p.V1204I|1|0.31|ENSG00000136040|chr12:94279484-94279484|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3052978515625	2	536.823692	1071.63283	-1.0591	-0.00056855	-3.3163	-0.0017803	-4.3754	-0.0023488	536.8220552796116	48.06	0.38792	47.907	47.669	48.057	-0.15301					20	11	3	0	0	0	0.024323	1	4805	4805		63.306	30.494	1	2911800			45509	18976	31535	31585	50908	50908					0.09988077033835907
LNVIHRAI	8	Unmodified	_LNVIHRAI_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30548095703125	2	468.292894	934.571235	-0.67294	-0.00031513	3.5904	0.0016814	2.9175	0.0013662	468.295285534216	61.924	0.17691	61.924	61.832	62.009	0					5	4	2	0	0	0	0.027866	1	7189	7189		40.573	7.057	1	463410			45510	5881	31536	31586	50909	50909					0.10133190125225155
LNVIYISRV	9	Unmodified	_LNVIYISRV_					0	0	0		ENST00000265713.6_2_8:41789140-41789482:-|nuORF	ENST00000265713.6_2_8:41789140-41789482:-|nuORF	ENST00000265713.6_2_8:41789140-41789482:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8252563476562	2	538.826766	1075.63898	-1.073	-0.00057815	-0.50884	-0.00027418	-1.5818	-0.00085233	538.8263755788566	48.407	2.2012	48.254	47.542	49.743	-0.15301					136	62	4	0	0	0	0.2101	1	4888	4888		87.696	2.5356	1	18467000			45511	11600	31537	31587	50910	50910					0.10418595265377917
LNVKGLAR	8	Unmodified	_LNVKGLAR_					0	0	0		nc|ENSG00000149380|Q7Z4N8-2|P4HA3;ENST00000525968.1_1_11:73984627-74015361:-|nuORF;ENSG00000149380|ENST00000331597|P4HA3;nc|ENSG00000149380|Q7Z4N8-3|P4HA3	nc|ENSG00000149380|Q7Z4N8-2|P4HA3	nc|ENSG00000149380|Q7Z4N8-2|P4HA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.248046875	2	435.779619	869.544686	-0.088301	-3.848E-05	0.094759	4.1294E-05	0.0064581	2.8143E-06	435.7795472296571	33.805	0.71228	33.581	33.321	34.033	-0.22412					32	17	3	0	0	0	0.027866	1	2478	2478		17.365	4.4058	1	623150			45512	6086	31538	31588	50911	50911					0.10469501233899337
LNVKGLAR	8	Unmodified	_LNVKGLAR_					0	0	0		nc|ENSG00000149380|Q7Z4N8-2|P4HA3;ENST00000525968.1_1_11:73984627-74015361:-|nuORF;ENSG00000149380|ENST00000331597|P4HA3;nc|ENSG00000149380|Q7Z4N8-3|P4HA3	nc|ENSG00000149380|Q7Z4N8-2|P4HA3	nc|ENSG00000149380|Q7Z4N8-2|P4HA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.2480773925781	2	435.779619	869.544686	-0.85094	-0.00037082	0.76484	0.0003333	-0.086105	-3.7523E-05	435.7799118529761	33.743	0.77647	33.567	33.352	34.128	-0.17557					34	19	3	0	0	0	0.027866	1	2459	2459		17.365	0	1	594040			45513	6086	31538	31588	50912	50912					0.10469501233899337
LNVKKSQVM	9	Unmodified	_LNVKKSQVM_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.769775390625	2	523.804977	1045.5954	-0.8086	-0.00042355	-2.9122	-0.0015254	-3.7208	-0.001949	523.8032306069517	61.302	0.66399	61.126	60.833	61.497	-0.1761					43	15	4	0	0	0	0.02435	1	6848	6848		51.335	19.806	1	1312600	+		45514	21708	31539	31589	50913	50913					0.07442662496578123
LNVKSFSTVI	10	Unmodified	_LNVKSFSTVI_					0	0	0		ENST00000558841.1_1_15:52338240-52338339:+|nuORF	ENST00000558841.1_1_15:52338240-52338339:+|nuORF	ENST00000558841.1_1_15:52338240-52338339:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.766845703125	2	554.324057	1106.63356	-1.0613	-0.00058828	0.91695	0.00050829	-0.1443	-7.999E-05	554.3245869491182	53.99	0.62475	53.854	53.63	54.255	-0.13617					52	19	4	0	0	0	0.03519	1	5777	5777		12.812	0	1	2144000			45515	16759	31540	31590	50914	50914					0.08450871682907746
LNVKSFSTVI	10	Unmodified	_LNVKSFSTVI_					0	0	0		ENST00000558841.1_1_15:52338240-52338339:+|nuORF	ENST00000558841.1_1_15:52338240-52338339:+|nuORF	ENST00000558841.1_1_15:52338240-52338339:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	554.324057	1106.63356	-0.099973	-5.5418E-05	0.72379	0.00040121	0.62382	0.0003458	554.3246473902161	54.152	0.54448	53.907	53.687	54.231	-0.2453	0.0298	-9.9094E-05	NaN	18.262	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1536900			45516	16759	31540	31590							0.08450871682907746
LNVKSFSTVI	10	Unmodified	_LNVKSFSTVI_					0	0	0		ENST00000558841.1_1_15:52338240-52338339:+|nuORF	ENST00000558841.1_1_15:52338240-52338339:+|nuORF	ENST00000558841.1_1_15:52338240-52338339:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	554.324057	1106.63356	-0.20645	-0.00011444	0.3491	0.00019351	0.14265	7.9074E-05	554.3244115988539	54.068	0.54881	53.87	53.619	54.168	-0.19739	-0.0068935	-0.00051449	NaN	18.262	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1437700			45517	16759	31540	31590							0.08450871682907746
LNVLFGNLSI	10	Unmodified	_LNVLFGNLSI_					0	0	0		ENST00000216014.8_1_22:38878537-38878720:+|nuORF	ENST00000216014.8_1_22:38878537-38878720:+|nuORF	ENST00000216014.8_1_22:38878537-38878720:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165283203125	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.0616	1	11182	11182		37.812	1.3648	1	17068000			45518	11151	31541	31591	50915	50915					0.08222889028479585
LNVLIYSVEK	10	Unmodified	_LNVLIYSVEK_					0	0	0		ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.343505859375	2	589.344989	1176.67542	-1.1102	-0.00065427	-2.5095	-0.001479	-3.6197	-0.0021332	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	1.0992	1	11545	11545		32.812	2.3088	1	4794700			45519	12707	31542	31592	50916	50916					0.09415427371436635
LNVLLLIN	8	Unmodified	_LNVLLLIN_					0	0	0		ENST00000428210.5_1_2:61719906-61720176:-|nuORF	ENST00000428210.5_1_2:61719906-61720176:-|nuORF	ENST00000428210.5_1_2:61719906-61720176:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.77801513671875	2	456.299853	910.585153	0.20974	9.5704E-05	2.8873	0.0013175	3.097	0.0014132	456.3009949579119	42.112	1.5505	42.138	41.857	43.408	0.026012					87	43	3	0	0	0	0.027866	1	3931	3931		42.474	0	1	523550			45520	14128	31543	31593	50917	50917					0.1262842283366581
LNVLVQNLL	9	Unmodified	_LNVLVQNLL_					0	0	0			REV__ENSG00000136867|ENST00000259392|SLC31A2	REV__ENSG00000136867|ENST00000259392|SLC31A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2847290039062	2	513.321317	1024.62808	-1.131	-0.00058056	0.63941	0.00032822	-0.49157	-0.00025233	513.321925558511	61.88	0.74104	61.943	61.346	62.087	0.062763					13	8	3	0	0	0	0.024487	1	7083	7083		24.203	10.427	1	351500	+		45521	23692	31544	31594	50918	50918					0.11675192891107145
LNVNRTQL	8	Unmodified	_LNVNRTQL_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27734375	2	479.277441	956.540328	0.51465	0.00024666	-0.27369	-0.00013117	0.24097	0.00011549	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.845	1	10523	10523		55.504	5.4797	1	4752300	+		45522	25638	31545	31595	50919	50919					0.06031992020336929
LNVNRTQL	8	Unmodified	_LNVNRTQL_					0	0	0			REV__ENSG00000163811|ENST00000407426|WDR43	REV__ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2777404785156	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.96769	1	10367	10367		42.396	1.8235	1	4947400	+		45523	25638	31545	31595	50920	50920					0.06031992020336929
LNVPDLLKSPV	11	Unmodified	_LNVPDLLKSPV_					0	0	0			REV__ENST00000555385.1_1_14:76045963-76129466:+|nuORF	REV__ENST00000555385.1_1_14:76045963-76129466:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8560791015625	2	597.858264	1193.70197	-0.56214	-0.00033608	-3.0322	-0.0018128	-3.5944	-0.0021489	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	1.0233	1	11556	11556		31.634	1.3165	1	5880700	+		45524	34982	31546	31596	50921	50921					0.11287116262769814
LNVPDLLKSPV	11	Unmodified	_LNVPDLLKSPV_					0	0	0			REV__ENST00000555385.1_1_14:76045963-76129466:+|nuORF	REV__ENST00000555385.1_1_14:76045963-76129466:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.3583984375	2	597.858264	1193.70197	0.028254	1.6892E-05	-2.7647	-0.0016529	-2.7364	-0.001636	598.3585788626698	90.988	1.6784	90.848	90.115	91.794	-0.13942					112	39	3	0	0	0	1.0392	1	11116	11116		28.081	1.3886	1	2547700	+		45525	34982	31546	31596	50922	50922					0.11287116262769814
LNVPDLLKSPV	11	Unmodified	_LNVPDLLKSPV_					0	0	0			REV__ENST00000555385.1_1_14:76045963-76129466:+|nuORF	REV__ENST00000555385.1_1_14:76045963-76129466:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.85693359375	2	597.858264	1193.70197	-0.21005	-0.00012558	-3.4027	-0.0020343	-3.6127	-0.0021599	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.013	2	11590	11559;11590		33.922	2.1227	1	5598500	+		45526	34982	31546	31596	50923;50924	50924					0.11287116262769814
LNVQAPPS	8	Unmodified	_LNVQAPPS_					0	0	0			REV__ENST00000373883.3_1_2:220408769-220409425:+|nuORF	REV__ENST00000373883.3_1_2:220408769-220409425:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.52203369140625	2	413.226885	824.439217	0.43183	0.00017844	0.35102	0.00014505	0.78285	0.00032349	413.2268821795097	36.797	0.94742	36.734	36.432	37.379	-0.063389					60	24	4	0	0	0	0.027866	1	2938	2938		30.504	0	1	1359900	+		45527	31277	31547	31597	50925	50925					0.019975403176204054
LNVRAINGT	9	Unmodified	_LNVRAINGT_					0	0	0			REV__ENSG00000102837|ENST00000219022|OLFM4	REV__ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27789306640625	2	479.277441	956.540328	0.63902	0.00030627	-0.86315	-0.00041369	-0.22414	-0.00010742	479.2771210125938	81.156	2.9484	80.92	79.122	82.071	-0.23574					188	70	3	0	0	0	0.87448	1	9844	9844		34.173	1.3601	1	2107600	+		45528	21330	31548	31598	50926	50926					0.06031992020314192
LNVRNLRFDL	10	Unmodified	_LNVRNLRFDL_					0	0	0			REV__SCFD1|p.H288R|1|0.33|ENSG00000092108|chr14:30670263-30670263|A/G|missense_variant	REV__SCFD1|p.H288R|1|0.33|ENSG00000092108|chr14:30670263-30670263|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.2791442871094	3	420.578811	1258.7146	0.017271	7.264E-06	-1.2172	-0.00051195	-1.2	-0.00050468	420.5785087357279	29.284	0.38357	29.134	28.912	29.296	-0.14952					11	8	2	0	0	0	0.03519	1	1765	1765		32.751	8.5187	1	39510	+		45529	37462	31549	31599	50927	50927					0.09559572445664344
LNVRNLRFDL	10	Unmodified	_LNVRNLRFDL_					0	0	0			REV__SCFD1|p.H288R|1|0.33|ENSG00000092108|chr14:30670263-30670263|A/G|missense_variant	REV__SCFD1|p.H288R|1|0.33|ENSG00000092108|chr14:30670263-30670263|A/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	420.578811	1258.7146	-0.48274	-0.00020303	-0.56261	-0.00023662	-1.0454	-0.00043965	420.5786150956062	29.394	0.38407	29.221	28.981	29.365	-0.17258	0.043616	0.00027824	NaN	32.751	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65166	+		45530	37462	31549	31599							0.09559572445664344
LNVSAASILVF	11	Unmodified	_LNVSAASILVF_					0	0	0			REV__ENSG00000146409|ENST00000275227|SLC18B1	REV__ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3296508789062	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	0.99553	4	11197	11197;11269;11281;11369		37.812	7.4938	1	17705000	+		45531	24487	31550	31600	50928;50929;50930;50931	50928					0.0881915819995811
LNVSAASILVF	11	Unmodified	_LNVSAASILVF_					0	0	0			REV__ENSG00000146409|ENST00000275227|SLC18B1	REV__ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.331882	1132.64921	-0.10765	-6.1074E-05	-3.625	-0.0020566	-3.7326	-0.0021176	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.0344	1	10906	10906		29.17	1.0886	1	5896300	+		45532	24487	31550	31600	50932	50932					0.0881915819995811
LNVSAASILVF	11	Unmodified	_LNVSAASILVF_					0	0	0			REV__ENSG00000146409|ENST00000275227|SLC18B1	REV__ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.330322265625	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	0.99553	1	11139	11139		37.812	6.2817	1	19210000	+		45533	24487	31550	31600	50933	50933					0.0881915819995811
LNVTDGVKR	9	Unmodified	_LNVTDGVKR_					0	0	0			REV__nc|ENSG00000221986|A2RUH7-2|MYBPHL	REV__nc|ENSG00000221986|A2RUH7-2|MYBPHL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2902526855469	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.80003	1	10419	10419		39.253	1.4413	1	10571000	+		45534	28843	31551	31601	50934	50934					0.06628261191815454
LNVTSLALP	9	Unmodified	_LNVTSLALP_					0	0	0		ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2976379394531	2	464.279118	926.543683	-0.01483	-6.8851E-06	0.091402	4.2436E-05	0.076572	3.5551E-05	464.27897503742673	61.903	0.61858	61.965	61.504	62.122	0.062767					26	16	2	0	0	0	0.024495	1	7065	7065		42.396	3.59	1	608970			45535	3802	31552	31602	50935	50935					0.07747242074310634
LNVVCGYEP	9	Unmodified	_LNVVCGYEP_					0	0	0			REV__ENSG00000164362|ENST00000310581|TERT	REV__ENSG00000164362|ENST00000310581|TERT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.26318359375	2	497.239135	992.463718	-0.92397	-0.00045944	1.0416	0.00051793	0.11765	5.8498E-05	497.239849640096	44.376	0.35231	44.132	43.904	44.256	-0.2444					10	9	2	0	0	0	0.023817	1	4144	4144		42.396	0	1	115140	+		45536	25746	31553	31603	50936	50936					-0.032815675911592734
LNVVFLAW	8	Unmodified	_LNVVFLAW_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2375793457031	2	481.278921	960.543289	0.12482	6.0073E-05	-0.062832	-3.024E-05	0.061987	2.9833E-05	481.2787553488911	70.178	0.66228	69.911	69.536	70.198	-0.26725					39	15	4	0	0	0	0.027866	1	8130	8130		35.201	0	1	934170	+		45537	29202	31554	31604	50937	50937					0.06143867145135573
LNVVRPRRVL	10	Unmodified	_LNVVRPRRVL_					0	0	0			REV__ENST00000565712.1_1_15:83674416-83680265:-|nuORF	REV__ENST00000565712.1_1_15:83674416-83680265:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	611.3558349609375	2	611.398756	1220.78296	0.09815	6.0009E-05	0.064747	3.9586E-05	0.1629	9.9595E-05	611.8988042109808	94.362	0.24315	94.24	94.016	94.259	-0.12215					7	5	2	0	0	0	0.03519	1	11614	11614		19.997	0	1	53909	+		45538	35286	31555	31605	50938	50938					0.18139861816189295
LNVWSLMLP	9	Unmodified	_LNVWSLMLP_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3419799804688	2	536.79662	1071.57869	-0.67496	-0.00036232	4.4176	0.0023713	3.7426	0.002009	536.7991103102303	26.761	0.92425	26.593	26.262	27.186	-0.16816					44	21	3	0	0	0	0.024427	1	1479	1479		51.335	7.2187	1	228820	+		45539	22435	31556	31606	50939	50939					0.04576161610634699
LNVYLWDV	8	Unmodified	_LNVYLWDV_					0	0	0		ENSG00000133116|ENST00000380099|KL	ENSG00000133116|ENST00000380099|KL	ENSG00000133116|ENST00000380099|KL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7896423339844	2	511.271293	1020.52803	-1.0567	-0.00054024	4.1098	0.0021012	3.0532	0.001561	511.2726787117286	85.689	0.4939	85.713	85.45	85.944	0.023666					10	7	2	0	0	0	0.027866	1	10660	10660		31.955	7.7521	1	363260			45540	4686	31557	31607	50940	50940					0.018589555572816607
LNVYPPGENH	10	Unmodified	_LNVYPPGENH_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2963256835938	2	570.277638	1138.54072	-0.44706	-0.00025495	1.3591	0.00077506	0.91204	0.00052011	570.2785174650005	61.41	0.2501	61.153	61.008	61.258	-0.25725					8	5	2	0	0	0	0.03519	1	6857	6857		30.318	0	1	82276			45541	1082	31558	31608	50941	50941					-0.023006330504813377
LNVYYIIIL	9	Unmodified	_LNVYYIIIL_					0	0	0		ENSG00000132164|ENST00000254488|SLC6A11;nc|ENSG00000132164|P48066-2|SLC6A11;ENSG00000111181|ENST00000684302|SLC6A12	ENSG00000132164|ENST00000254488|SLC6A11	ENSG00000132164|ENST00000254488|SLC6A11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.3121337890625	2	562.341718	1122.66888	-0.15026	-8.45E-05	2.5782	0.0014498	2.428	0.0013653	562.3430527792154	87.321	1.2256	87.143	86.349	87.575	-0.17875					67	28	3	0	0	0	0.024535	1	10629	10629		12.207	1.3413	1	191990			45542	4578	31559	31609	50942	50942					0.11245534210706865
LNWDLPEP	8	Unmodified	_LNWDLPEP_					0	0	0		NMB|p.S28N|1|0.32|ENSG00000197696|chr15:84658070-84658070|C/T|missense_variant	NMB|p.S28N|1|0.32|ENSG00000197696|chr15:84658070-84658070|C/T|missense_variant	NMB|p.S28N|1|0.32|ENSG00000197696|chr15:84658070-84658070|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2924499511719	2	492.245275	982.475997	-0.79636	-0.00039201	1.0552	0.00051943	0.25886	0.00012742	492.24479052514965	79.441	1.338	79.269	78.442	79.78	-0.17226					44	31	3	0	0	0	0.027866	1	9846	9846		68.787	12.066	1	78130			45543	18878	31560	31610	50943	50943					-0.015942078564762596
LNWIGVPTREF	11	Unmodified	_LNWIGVPTREF_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;ENST00000490115.5_1_3:48586091-48594264:-|nuORF;PFKFB4|p.F191Efs*4|1|0.31|ENSG00000114268|chr3:48538556-48538560|TGAAG/-|frameshift_variant;ENST00000496767.5_1_3:48586091-48599213:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7714538574219	3	444.575067	1330.70337	0.18009	8.0063E-05	-3.5115	-0.0015611	-3.3314	-0.0014811	444.57355932537	32.113	0.5639	31.92	31.685	32.249	-0.19261					16	12	2	0	0	0	0.024821	1	2225	2225		9.6461	0	1	55993			45544	3351	31561	31611	50944	50944					0.051247503515014614
LNWLTIDF	8	Unmodified	_LNWLTIDF_					0	0	0		ENST00000399959.6_1_X:41208058-41208109:+|nuORF	ENST00000399959.6_1_X:41208058-41208109:+|nuORF	ENST00000399959.6_1_X:41208058-41208109:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.8443908691406	2	511.271293	1020.52803	0.11555	5.9079E-05	0.08542	4.3673E-05	0.20097	0.00010275	511.27152896248646	76.976	1.2817	76.976	76.391	77.672	0					38	30	2	0	0	0	0.027866	1	9442	9442		51.335	14.176	1	544360			45545	13656	31562	31612	50945	50945					0.018589555572816607
LNWMQSLV	8	Unmodified	_LNWMQSLV_					0	0	0			REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	REV__sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.27764892578125	2	495.757495	989.500437	-0.18699	-9.2702E-05	3.4755	0.001723	3.2885	0.0016303	495.759180346624	20.523	0.73015	20.356	19.909	20.639	-0.16774					18	14	2	0	0	0	0.027866	1	575	575		37.159	0	1	59488	+		45546	37564	31563	31613	50946	50946					0.005267290253982537
LNWNSVRHFLT	11	Unmodified	_LNWNSVRHFLT_					0	0	0			REV__ENST00000251241.8_1_17:57685310-57685481:+|nuORF	REV__ENST00000251241.8_1_17:57685310-57685481:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.23193359375	3	462.914083	1385.72042	-1.0487	-0.00048545	-3.5186	-0.0016288	-4.5673	-0.0021143	462.91254764609187	28.78	0.5832	28.78	28.49	29.073	0					27	13	3	0	0	0	0.024759	1	1723	1723		23.378	14.579	1	155840	+		45547	29499	31564	31614	50947	50947					0.04298670957336981
LNWSEALKL	9	Unmodified	_LNWSEALKL_					0	0	0		ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55002433-55002823:+|nuORF	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant;ENST00000407916.2_1_7:55002433-55002823:+|nuORF	ARHGAP5|p.V763Efs*7|1|0.04|ENSG00000100852|chr14:32092955-32092959|TGTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3008422851562	2	537.303124	1072.5917	-1.0878	-0.00058449	-1.489	-0.00080006	-2.5768	-0.0013845	537.3024056668389	56.432	1.2851	56.53	55.999	57.284	0.097893					64	35	4	0	0	0	0.30449	1	6216	6216		75.043	0.78827	1	3334600			45548	125;13755	31565	31615	50948	50948					0.058303159943761784
LNWWNNLL	8	Unmodified	_LNWWNNLL_					0	0	0			REV__ENST00000410047.1_1_7:23164348-23164677:+|nuORF	REV__ENST00000410047.1_1_7:23164348-23164677:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3056640625	2	536.782359	1071.55016	-0.57289	-0.00030751	-3.9713	-0.0021317	-4.5441	-0.0024392	536.780508294594	47.764	0.65261	47.666	47.349	48.002	-0.097553					44	17	4	0	0	0	0.027866	1	4732	4732		35.201	0	1	795000	+		45549	31980	31566	31616	50949	50949					0.017251800257099603
LNYGIVKVE	9	Unmodified	_LNYGIVKVE_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2762451171875	2	517.797675	1033.5808	-0.92795	-0.00048049	0.38702	0.0002004	-0.54092	-0.00028009	517.7977111417506	61.703	0.54518	61.774	61.551	62.096	0.071125					22	14	2	0	0	0	0.024381	1	7114	7114		45.952	13.14	1	414950	+		45550	27225	31567	31617	50950	50950					0.06534913620089355
LNYGYGLL	8	Unmodified	_LNYGYGLL_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.78057861328125	2	456.744911	911.475269	0.0048579	2.2188E-06	-4.4071	-0.0020129	-4.4023	-0.0020107	456.742724161162	49.5	0.73253	49.349	48.901	49.634	-0.1512					40	19	3	0	0	0	0.027866	1	5081	5081		62.978	0	1	504810	+		45551	28441	31568	31618	50951	50951					0.015989974944886853
LNYIPKIA	8	Unmodified	_LNYIPKIA_					0	0	0		nc|ENSG00000196275|Q86UP8-6|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.29254150390625	2	466.284203	930.553853	-0.48455	-0.00022594	2.2986	0.0010718	1.814	0.00084586	466.28492223612363	60.662	0.41687	60.741	60.501	60.918	0.078888					15	10	2	0	0	0	0.027866	1	6930	6930		20.482	0	1	119510			45552	8465	31569	31619	50952	50952					0.08579849799548356
LNYSQSFSK	9	Unmodified	_LNYSQSFSK_					0	0	0			REV__ENSG00000196267|ENST00000682614|ZNF836	REV__ENSG00000196267|ENST00000682614|ZNF836	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3057250976562	2	537.266739	1072.51892	-0.97293	-0.00052272	1.7088	0.00091809	0.73588	0.00039537	537.2669792561665	48.524	0.51736	48.524	48.243	48.761	0					18	14	2	0	0	0	0.024405	1	4984	4984		35.618	14.671	1	85378	+		45553	28155	31570	31620	50953	50953					-0.014434377990482972
LNYTTIMSH	9	Unmodified	_LNYTTIMSH_					0	0	0		ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7635498046875	2	540.263142	1078.51173	-1.4331	-0.00077426	0.60828	0.00032863	-0.82483	-0.00044563	540.2632491884495	48.708	1.4952	48.775	48.228	49.723	0.066795					66	40	2	0	0	0	0.02435	1	5075	5075		19.997	0	1	350520			45554	10626	31571	31621	50954	50954					-0.024384936711157934
LNYVSLRIL	9	Unmodified	_LNYVSLRIL_					0	0	0		LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant;nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	LSS|p.H510Afs*18|1|0.37|ENSG00000160285|chr21:46206708-46206709|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8163452148438	2	545.834591	1089.65463	-0.60684	-0.00033123	-4.4858	-0.0024485	-5.0926	-0.0027797	545.8329594614228	67.143	0.16418	66.919	66.816	66.981	-0.22374					5	3	2	0	0	0	0.024457	1	7719	7719		37.159	5.2042	1	310920			45555	6802	31572	31622	50955	50955					0.11338881782421595
LPAAFLDLFT	10	Unmodified	_LPAAFLDLFT_					0	0	0		ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3320922851562	2	554.307875	1106.6012	0.036751	2.0372E-05	3.0311	0.0016802	3.0679	0.0017006	554.3100482522137	95.015	0.56335	95.02	94.791	95.355	0.0041199					25	12	3	0	0	0	0.03519	1	12049	12049		23.042	0	1	119920			45556	9053	31573	31623	50956	50956					0.05216084279913957
LPAALRVRPM	10	Unmodified	_LPAALRVRPM_					0	0	0			REV__ENSG00000175262|ENST00000377004|C1orf127	REV__ENSG00000175262|ENST00000377004|C1orf127	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3436279296875	2	562.342061	1122.66957	-0.75902	-0.00042683	3.129	0.0017596	2.37	0.0013328	562.3436714978816	89.172	2.615	89.009	88.263	90.878	-0.1626					183	62	4	0	0	0	1.1329	1	10937	10937		27.882	7.8855	1	736810	+		45557	26932	31574	31624	50957	50957					0.11314050378769025
LPAALTIGNVY	11	Unmodified	_LPAALTIGNVY_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5;ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.7705688476562	2	566.324057	1130.63356	-0.86917	-0.00049223	-0.3462	-0.00019606	-1.2154	-0.00068829	566.3237475486521	44.355	0.47756	44.251	44.03	44.508	-0.10468					20	12	2	0	0	0	0.024351	1	4163	4163		69.628	21.712	1	630100			45558	9631	31575	31625	50958	50958					0.07346871682898382
LPAALTIGNVY	11	Unmodified	_LPAALTIGNVY_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5;ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.771484375	2	566.324057	1130.63356	-0.77178	-0.00043708	-0.28025	-0.00015871	-1.052	-0.00059579	566.3237595888894	44.545	0.436	44.3	44.08	44.516	-0.2444					21	11	2	0	0	0	0.02479	1	4179	4179		79.713	21.901	1	595620			45559	9631	31575	31625	50959	50959					0.07346871682898382
LPAAPRITD	9	Unmodified	_LPAAPRITD_					0	0	0		ENST00000367607.7_2_1:180080953-180081142:+|nuORF	ENST00000367607.7_2_1:180080953-180081142:+|nuORF	ENST00000367607.7_2_1:180080953-180081142:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	477.2562255859375	2	477.274367	952.53418	0.24021	0.00011464	-0.30568	-0.00014589	-0.065473	-3.1249E-05	477.2742352455621	41.92	0.77838	41.797	41.456	42.234	-0.12299					38	20	3	0	0	0	0.024477	1	3691	3691		20.947	4.4738	1	603480			45560	12870	31576	31626	50960	50960					0.056014737887949195
LPAAPWRWR	9	Unmodified	_LPAAPWRWR_					0	0	0		ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.3082885742188	2	576.824892	1151.63523	-0.20451	-0.00011797	-0.78602	-0.0004534	-0.99053	-0.00057136	576.8242963454269	72.968	0.72266	72.691	72.411	73.133	-0.2769					33	16	3	0	0	0	0.024541	1	8566	8566		24.203	5.0992	1	633270			45561	11373	31577	31627	50961	50961					0.06547970282144888
LPAARVSRAAR	11	Unmodified	_LPAARVSRAAR_					0	0	0		ENST00000337959.8_1_22:43266013-43266163:-|nuORF	ENST00000337959.8_1_22:43266013-43266163:-|nuORF	ENST00000337959.8_1_22:43266013-43266163:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.3577880859375	2	584.357088	1166.69962	-1.2459	-0.00072803	-0.081369	-4.7549E-05	-1.3272	-0.00077557	584.3569062668547	91.004	2.861	90.88	89.85	92.711	-0.12341					175	68	3	0	0	0	1.0777	1	11155	11155		17.468	0	1	556520			45562	12432	31578	31628	50962	50962					0.12294125368293862
LPAARWSDP	9	Unmodified	_LPAARWSDP_					0	0	0		ENST00000553164.1_1_12:56708586-56709779:-|nuORF	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	ENST00000553164.1_1_12:56708586-56709779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7921447753906	2	506.764166	1011.51378	-1.2852	-0.00065132	-2.1034	-0.0010659	-3.3886	-0.0017172	507.26366812014317	44.216	0.29211	44.216	44.022	44.314	0					12	8	2	0	0	0	0.024	1	4177	4177		55.504	11.387	1	306920			45563	16632	31579	31629	50963	50963					0.008483031289870269
LPACRALDP	9	Carbamidomethyl (C)	_LPAC(Carbamidomethyl (C))RALDP_	LPAC(1)RALDP		LPAC(85)RALDP		0	1	0		ENST00000379977.7_3_10:5994794-5994992:-|nuORF	ENST00000379977.7_3_10:5994794-5994992:-|nuORF	ENST00000379977.7_3_10:5994794-5994992:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7922668457031	2	506.765852	1011.51715	-1.2446	-0.0006307	-2.2157	-0.0011228	-3.4602	-0.0017535	506.76501207832007	44.318	0.37161	44.173	43.921	44.292	-0.14471					13	10	2	0	0	0	0.021616	1	4171	4171		85.359	13.982	1	492690			45564	13294	31580	31630	50964	50964	180				0.011852299113343179
LPADALGHA	9	Unmodified	_LPADALGHA_					0	0	0			REV__ENSG00000116819|ENST00000373235|TFAP2E	REV__ENSG00000116819|ENST00000373235|TFAP2E	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.73175048828125	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	0.78069	1	12261	12261		40.573	12.69	1	1517800	+		45565	22307	31581	31631	50965	50965					0.01292942691884491
LPADRTALL	9	Unmodified	_LPADRTALL_					0	0	0		ENST00000449076.5_1_12:55368327-55378406:-|nuORF	ENST00000449076.5_1_12:55368327-55378406:-|nuORF	ENST00000449076.5_1_12:55368327-55378406:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.29071044921875	2	485.290017	968.565481	-0.25188	-0.00012223	0.41554	0.00020166	0.16367	7.9425E-05	485.2901426210494	34.543	0.7662	34.336	34.005	34.771	-0.20696					52	18	4	0	0	0	0.27161	1	2548	2548		79.451	5.4763	1	2254200			45566	14493	31582	31632	50966	50966					0.07994046822898326
LPADRTALL	9	Unmodified	_LPADRTALL_					0	0	0		ENST00000449076.5_1_12:55368327-55378406:-|nuORF	ENST00000449076.5_1_12:55368327-55378406:-|nuORF	ENST00000449076.5_1_12:55368327-55378406:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2911071777344	2	485.290017	968.565481	-0.37363	-0.00018132	0.23408	0.00011359	-0.13955	-6.7724E-05	485.2900089677078	34.525	0.83631	34.35	33.972	34.809	-0.17557					56	20	4	0	0	0	0.50848	1	2524	2524		58.782	2.0609	1	2571300			45567	14493	31582	31632	50967	50967					0.07994046822898326
LPADRTLRHV	10	Unmodified	_LPADRTLRHV_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.343505859375	2	589.343646	1176.67274	0.92698	0.00054631	-2.8783	-0.0016963	-1.9514	-0.00115	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.118	1	11386	11386		30.318	2.4355	1	4746700	+		45568	21230	31583	31633	50968	50968					0.09147016757151505
LPAEHTEALP	10	Unmodified	_LPAEHTEALP_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.7919311523438	2	539.282389	1076.55022	-0.19924	-0.00010745	-2.327	-0.0012549	-2.5262	-0.0013623	539.2814288323525	51.179	0.4623	51.179	51.105	51.568	0					21	12	2	0	0	0	0.03519	1	5405	5405		53.351	14.545	1	168730	+		45569	25862	31584	31634	50969	50969					0.01501135235048423
LPAELGLRG	9	Unmodified	_LPAELGLRG_					0	0	0		ENST00000357166.10_1_X:128976053-128977729:-|nuORF	ENST00000357166.10_1_X:128976053-128977729:-|nuORF	ENST00000357166.10_1_X:128976053-128977729:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.2769470214844	2	463.276909	924.539266	0.31896	0.00014777	-0.46242	-0.00021423	-0.14346	-6.6462E-05	463.2765371280349	47.175	1.518	47.022	46.309	47.827	-0.15301					92	42	4	0	0	0	0.27161	1	4706	4706		79.451	2.6769	1	5614400			45570	12689	31585	31635	50970	50970					0.07397777651419801
LPAELGLRG	9	Unmodified	_LPAELGLRG_					0	0	0		ENST00000357166.10_1_X:128976053-128977729:-|nuORF	ENST00000357166.10_1_X:128976053-128977729:-|nuORF	ENST00000357166.10_1_X:128976053-128977729:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.2767639160156	2	463.276909	924.539266	0.17604	8.1557E-05	-0.33645	-0.00015587	-0.1604	-7.4311E-05	463.2766173278001	46.99	1.2924	47.049	46.416	47.708	0.059097					83	36	4	0	0	0	0.33245	1	4639	4639		71.296	14.575	1	6407800			45571	12689	31585	31635	50971	50971					0.07397777651419801
LPAERNQL	8	Unmodified	_LPAERNQL_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7643127441406	2	470.764166	939.513779	-0.4818	-0.00022681	0.4567	0.000215	-0.0251	-1.1816E-05	470.7642810208321	35.805	0.6688	35.6	35.387	36.056	-0.20518					39	18	3	0	0	0	0.35998	1	2743	2743		102.77	25.927	1	2877500			45572	9797	31586	31636	50972	50972					0.04160303128992382
LPAEVKAI	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LPAEVKAI_					1	0	0		ENSG00000168904|ENST00000301981|LRRC28;ENST00000558890.5_1_15:99872165-99903471:+|nuORF;nc|ENSG00000168904|Q86X40-3|LRRC28;LRRC28|p.E266K|1|0.47|ENSG00000168904|chr15:99361436-99361436|G/A|missense_variant;nc|ENSG00000168904|Q86X40-2|LRRC28	ENSG00000168904|ENST00000301981|LRRC28;nc|ENSG00000168904|Q86X40-2|LRRC28	nc|ENSG00000168904|Q86X40-2|LRRC28	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7666931152344	2	441.768386	881.522219	0.37011	0.0001635	-1.3269	-0.00058618	-0.95679	-0.00042268	441.76786199204633	102.85	1.6021	102.85	102.5	104.11	-0.0046005					103	38	6	0	0	0	0.96719	1	13114	13114		42.474	7.2737	1	25278000			45573	7878;18497	31587	31637	50973	50973					0.07671857045613706
LPAEYCLP	8	Unmodified	_LPAEYCLP_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK;ENST00000464499.5_1_16:70502828-70508568:+|nuORF	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.7556457519531	2	453.225497	904.43644	-0.1169	-5.2983E-05	-3.8419	-0.0017412	-3.9588	-0.0017942	453.22348536709376	48.402	0.53432	48.469	48.265	48.8	0.066795					31	14	3	0	0	0	0.027866	1	4866	4866		52.299	18.127	1	292510			45574	6592	31588	31638	50974	50974					-0.01960051131561613
LPAFDALGQLT	11	Unmodified	_LPAFDALGQLT_					0	0	0		nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	nc|ENSG00000089127|P00973-4|OAS1	nc|ENSG00000089127|P00973-4|OAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2789916992188	2	573.313689	1144.61282	0.71696	0.00041105	-4.0431	-0.002318	-3.3262	-0.0019069	573.3112696660046	77.71	0.58986	77.468	77.405	77.995	-0.24232					24	13	3	0	0	0	0.024723	1	9255	9255		23.523	6.0547	1	361950			45575	1895	31589	31639	50975	50975					0.04630281303229822
LPAFLIDII	9	Unmodified	_LPAFLIDII_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.8169250488281	2	507.815336	1013.61612	-0.16831	-8.547E-05	-3.123	-0.0015859	-3.2913	-0.0016714	507.8170844481102	102.48	0.7421	102.49	102.11	102.85	0.0073471					32	17	3	0	0	0	0.60698	1	13080	13080		52.299	0	1	143870	+		45576	25912	31590	31640	50976	50976					0.1098557614790252
LPAFLIDII	9	Unmodified	_LPAFLIDII_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.815336	1013.61612	-0.56762	-0.00028825	3.8986	0.0019797	3.3309	0.0016915	507.8173717154712	102.47	0.56726	102.47	102.13	102.69	0	0.086585	0.0010183	NaN	52.299	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132170	+		45577	25912	31590	31640							0.1098557614790252
LPAFLIDII	9	Unmodified	_LPAFLIDII_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	507.815336	1013.61612	-0.16831	-8.547E-05	-3.123	-0.0015859	-3.2913	-0.0016714	507.8170844481102	102.48	0.7421	102.49	102.11	102.85	0.0073471	0.10781	-0.006113	NaN	52.299	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143870	+		45578	25912	31590	31640							0.1098557614790252
LPAFLIDII	9	Unmodified	_LPAFLIDII_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.815336	1013.61612	0.15319	7.7793E-05	1.1437	0.00058077	1.2969	0.00065857	507.8168711250567	102.49	0.89803	102.48	101.93	102.83	-0.0053864	0.10391	-0.0017797	NaN	52.299	26	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139740	+		45579	25912	31590	31640							0.1098557614790252
LPAFLIDII	9	Unmodified	_LPAFLIDII_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.815336	1013.61612	-0.024259	-1.2319E-05	3.9572	0.0020095	3.9329	0.0019972	507.8165633969409	102.21	0.23438	102.08	101.96	102.19	-0.12666	-0.2983	0.0010778	NaN	52.299	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23369	+		45580	25912	31590	31640							0.1098557614790252
LPAFLLTVNDN	11	Unmodified	_LPAFLLTVNDN_					0	0	0			REV__ENSG00000145248|ENST00000273861|SLC10A4	REV__ENSG00000145248|ENST00000273861|SLC10A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2054138183594	3	406.223923	1215.64994	0.718	0.00029167	0.71755	0.00029148	1.4355	0.00058315	406.22467911969113	22.821	0.5122	22.632	22.374	22.886	-0.18894					24	10	3	0	0	0	0.024749	1	842	842		5.1424	0	1	517410	+		45581	24394	31591	31641	50977	50977					0.05073952848988483
LPAFTTEIQE	10	Unmodified	_LPAFTTEIQE_					0	0	0		ENST00000493034.1_1_22:31679072-31685925:-|nuORF;ENST00000480654.5_1_22:31679072-31685707:-|nuORF;nc|ENSG00000100100|Q96FE7-4|PIK3IP1;nc|ENSG00000100100|Q96FE7-5|PIK3IP1;nc|ENSG00000100100|Q96FE7-2|PIK3IP1;ENSG00000100100|ENST00000215912|PIK3IP1	ENST00000493034.1_1_22:31679072-31685925:-|nuORF	ENST00000493034.1_1_22:31679072-31685925:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.7933349609375	2	574.795329	1147.5761	-0.24018	-0.00013805	-3.8575	-0.0022173	-4.0977	-0.0023553	574.7931073435153	31.67	1.0356	31.682	31.34	32.376	0.011797					82	25	5	0	0	0	0.94316	1	2114	2114		51.193	1.7511	1	9817200			45582	2134	31592	31642	50978	50978					0.008219846866495573
LPAFTTEIQE	10	Unmodified	_LPAFTTEIQE_					0	0	0		ENST00000493034.1_1_22:31679072-31685925:-|nuORF;ENST00000480654.5_1_22:31679072-31685707:-|nuORF;nc|ENSG00000100100|Q96FE7-4|PIK3IP1;nc|ENSG00000100100|Q96FE7-5|PIK3IP1;nc|ENSG00000100100|Q96FE7-2|PIK3IP1;ENSG00000100100|ENST00000215912|PIK3IP1	ENST00000493034.1_1_22:31679072-31685925:-|nuORF	ENST00000493034.1_1_22:31679072-31685925:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.7930908203125	2	574.795329	1147.5761	-0.77385	-0.00044481	-3.3843	-0.0019453	-4.1581	-0.0023901	574.7934100799879	31.439	0.96495	31.508	31.166	32.131	0.068962					73	23	5	0	0	0	1.0002	1	2056	2056		45.972	3.108	1	9108800			45583	2134	31592	31642	50979	50979					0.008219846866495573
LPAGGRAFL	9	Unmodified	_LPAGGRAFL_					0	0	0		ENST00000530897.1_1_11:1331270-1331348:+|nuORF	ENST00000530897.1_1_11:1331270-1331348:+|nuORF	ENST00000530897.1_1_11:1331270-1331348:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2667236328125	2	451.266345	900.518136	0.11624	5.2455E-05	0.099056	4.47E-05	0.2153	9.7156E-05	451.2662493923492	54.126	0.59334	54.126	53.835	54.428	0					53	16	4	0	0	0	0.52323	1	5896	5896		57.811	2.9167	1	5241500			45584	16248	31593	31643	50980	50980					0.06389812342570167
LPAGGRAFL	9	Unmodified	_LPAGGRAFL_					0	0	0		ENST00000530897.1_1_11:1331270-1331348:+|nuORF	ENST00000530897.1_1_11:1331270-1331348:+|nuORF	ENST00000530897.1_1_11:1331270-1331348:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2664794921875	2	451.266345	900.518136	0.25379	0.00011453	0.10076	4.547E-05	0.35455	0.00016	451.266240199669	54.218	1.0449	54.071	53.566	54.611	-0.14724					65	29	4	0	0	0	0.52323	1	5888	5888		57.811	0.35863	1	4467600			45585	16248	31593	31643	50981	50981					0.06389812342570167
LPAGGRAFL	9	Unmodified	_LPAGGRAFL_					0	0	0		ENST00000530897.1_1_11:1331270-1331348:+|nuORF	ENST00000530897.1_1_11:1331270-1331348:+|nuORF	ENST00000530897.1_1_11:1331270-1331348:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.26666259765625	2	451.266345	900.518136	0.25669	0.00011583	0.026579	1.1994E-05	0.28327	0.00012783	451.2662441321006	53.893	0.85514	53.991	53.703	54.558	0.098015					66	24	5	0	0	0	0.52323	1	5801	5801		57.811	0.35863	1	5221100			45586	16248	31593	31643	50982	50982					0.06389812342570167
LPAGKNVL	8	Unmodified	_LPAGKNVL_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1;ENST00000475193.1_1_3:32587326-32612262:-|nuORF	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2558288574219	2	406.255446	810.496338	-1.4027	-0.00056986	2.7174	0.001104	1.3147	0.00053409	406.2564309714345	40.71	1.7006	40.48	39.771	41.472	-0.23029					83	44	2	0	0	0	0.65272	1	3523	3523		71.378	5.4805	1	2005900			45587	5754	31594	31644	50983	50983					0.08351007593978466
LPAGKNVLLL	10	Unmodified	_LPAGKNVLLL_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1;ENST00000475193.1_1_3:32587326-32612262:-|nuORF	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7504272460938	2	519.33951	1036.66447	-0.47292	-0.00024561	-1.9821	-0.0010294	-2.455	-0.001275	519.3383375994505	23.78	0.53477	23.856	23.647	24.182	0.076241					18	11	2	0	0	0	0.03519	1	926	926		10.866	2.6343	1	66833			45588	5754	31595	31645	50984	50984					0.14760069787803332
LPAGKNVLLL	10	Unmodified	_LPAGKNVLLL_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1;ENST00000475193.1_1_3:32587326-32612262:-|nuORF	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.33951	1036.66447	-0.85469	-0.00044388	-1.7957	-0.00093257	-2.6504	-0.0013764	519.338473730953	23.872	0.47261	23.872	23.651	24.123	0	0.034809	4.5746E-05	NaN	10.866	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82568			45589	5754	31595	31645							0.14760069787803332
LPAGKNVLLL	10	Unmodified	_LPAGKNVLLL_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1;ENST00000475193.1_1_3:32587326-32612262:-|nuORF	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.33951	1036.66447	-0.93482	-0.00048549	-1.7661	-0.0009172	-2.7009	-0.0014027	519.3384556691731	23.835	0.47286	23.783	23.566	24.039	-0.052546	-0.053962	7.6489E-05	NaN	10.866	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77433			45590	5754	31595	31645							0.14760069787803332
LPAHRTSS	8	Unmodified	_LPAHRTSS_					0	0	0		ENSG00000128805|ENST00000249601|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-2|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7719421386719	2	434.735409	867.456264	-0.54253	-0.00023586	1.5077	0.00065544	0.96515	0.00041958	434.73604978246186	25.643	0.59505	25.609	25.392	25.987	-0.034395					19	13	2	0	0	0	0.027866	1	1219	1219		25.45	2.4077	1	76764			45591	4314;18257	31596	31646	50985	50985					0.017234609234378695
LPAIKHLN	8	Unmodified	_LPAIKHLN_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.75579833984375	2	453.281995	904.549437	-0.091923	-4.1667E-05	0.096565	4.3771E-05	0.0046424	2.1043E-06	453.28191509500965	48.596	0.55265	48.596	48.277	48.83	0					36	15	3	0	0	0	0.027866	1	4940	4940		28.254	0	1	621940	+		45592	23486	31597	31647	50986	50986					0.09334385376655518
LPAIKHLN	8	Unmodified	_LPAIKHLN_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.7557373046875	2	453.281995	904.549437	-0.25851	-0.00011718	0.53833	0.00024401	0.27982	0.00012684	453.28206211228263	48.763	0.63753	48.61	48.227	48.864	-0.15277					37	17	3	0	0	0	0.027866	1	4952	4952		35.201	3.2459	1	417650	+		45593	23486	31597	31647	50987	50987					0.09334385376655518
LPAKDIQT	8	Unmodified	_LPAKDIQT_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.2923583984375	2	443.255643	884.496732	-0.79677	-0.00035317	-3.5877	-0.0015903	-4.3845	-0.0019435	443.25638747089585	28.093	0.89953	27.848	27.463	28.363	-0.24524					39	21	3	0	0	0	0.027866	1	1633	1633		30.504	15.84	1	144010			45594	2073	31598	31648	50988	50988					0.049863825231796
LPAKMTKI	8	Unmodified	_LPAKMTKI_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.27838134765625	2	451.280606	900.546659	-0.088489	-3.9934E-05	-3.5048	-0.0015816	-3.5932	-0.0016216	451.2788689096227	66.932	0.89603	66.932	66.672	67.568	0					53	21	4	0	0	0	0.68535	1	7967	7967		68.485	5.5063	1	2660600	+		45595	20797	31599	31649	50989	50989					0.09240793927483537
LPAKRKRA	8	Unmodified	_LPAKRKRA_					0	0	0			REV__nc|ENSG00000141298|Q76I76-2|SSH2	REV__nc|ENSG00000141298|Q76I76-2|SSH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.29010009765625	2	470.314161	938.613768	-0.40454	-0.00019026	-4.4298	-0.0020834	-4.8343	-0.0022736	470.31202168291804	28.067	0.1501	28.067	27.963	28.113	0					5	3	2	0	0	0	0.027866	1	1585	1585		20.482	0	1	39858	+		45596	30377	31600	31650	50990	50990					0.14200585253456666
LPALGIINIP	10	Unmodified	_LPALGIINIP_					0	0	0			REV__ENST00000503467.1_1_4:17587853-17609209:+|nuORF	REV__ENST00000503467.1_1_4:17587853-17609209:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.84423828125	2	510.826235	1019.63792	-0.6949	-0.00035497	-0.9492	-0.00048487	-1.6441	-0.00083985	510.82557876516347	76.131	0.53558	76.131	75.732	76.268	0					25	13	3	0	0	0	0.03519	1	9394	9394		57.811	20.652	1	633840	+		45597	19762	31601	31651	50991	50991					0.12888380896470153
LPALIFAVK	9	Unmodified	_LPALIFAVK_					0	0	0		nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1	nc|ENSG00000007062|O43490-5|PROM1	nc|ENSG00000007062|O43490-5|PROM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2926330566406	2	486.318046	970.621539	-0.44476	-0.0002163	2.0683	0.0010059	1.6236	0.00078957	486.3195365993836	81.791	0.55768	81.649	81.526	82.084	-0.14248					16	12	2	0	0	0	0.024466	1	9884	9884		25.45	0	1	74189			45598	806	31602	31652	50992	50992					0.13505299730366005
LPALLTEPRP	10	Unmodified	_LPALLTEPRP_					0	0	0			REV__ENST00000262713.6_1_14:23451416-23451767:-|nuORF	REV__ENST00000262713.6_1_14:23451416-23451767:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.830322265625	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.1267	1	11089	11089		29.15	1.2673	1	4967900	+		45599	29669	31603	31653	50993	50993					0.10094577919812764
LPALLTRLLP	10	Unmodified	_LPALLTRLLP_					0	0	0		nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8311767578125	2	553.868434	1105.72232	-1.076	-0.00059596	0.46225	0.00025602	-0.61374	-0.00033993	553.8682036129637	48.689	0.17604	48.409	48.253	48.429	-0.27977					5	4	2	0	0	0	0.03519	1	4816	4816		21.96	7.8228	1	74436			45600	18483	31604	31654	50994	50994					0.17368331713214502
LPALPCLA	8	Carbamidomethyl (C)	_LPALPC(Carbamidomethyl (C))LA_	LPALPC(1)LA		LPALPC(67)LA		0	1	0		ENST00000310677.8_1_14:24791428-24793534:-|nuORF;ENST00000554577.5_1_14:24791773-24793534:-|nuORF;ENST00000554936.1_1_14:24791773-24792709:-|nuORF	ENST00000310677.8_1_14:24791428-24793534:-|nuORF	ENST00000310677.8_1_14:24791428-24793534:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.7425842285156	2	427.743857	853.47316	-0.38214	-0.00016346	-3.2113	-0.0013736	-3.5935	-0.0015371	427.74231927164794	89.552	0.9099	89.552	89.144	90.054	0					45	21	3	0	0	0	0.69959	1	11309	11309		67.327	6.9236	1	806260			45601	12068	31605	31655	50995	50995	165				0.04056245485014642
LPALPDIK	8	Unmodified	_LPALPDIK_					0	0	0			REV__ENST00000512621.5_1_4:99993722-100006301:-|nuORF	REV__ENST00000512621.5_1_4:99993722-100006301:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.2366638183594	2	433.770929	865.527304	0.2178	9.4477E-05	3.1721	0.001376	3.3899	0.0014705	433.77214821640433	72.288	1.1872	72.011	71.352	72.539	-0.2769					68	28	4	0	0	0	0.027866	1	8531	8531		26.796	13.837	1	1175800	+		45602	28360	31606	31656	50996	50996					0.08916160908233906
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000186350|ENST00000481739|RXRA;RXRA|p.R421H|1|0.09|ENSG00000186350|chr9:134436487-134436487|G/A|missense_variant;ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENSG00000186350|ENST00000481739|RXRA	ENSG00000186350|ENST00000481739|RXRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.30303955078125	2	470.302927	938.591301	0.24772	0.0001165	0.098649	4.6395E-05	0.34637	0.0001629	470.3028034431188	67.321	1.159	67.321	66.672	67.831	0					69	28	4	0	0	0	0.30449	1	8035	8035		75.043	0.78827	1	1713500			45603	9542	31607	31657	50997	50997					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000186350|ENST00000481739|RXRA;RXRA|p.R421H|1|0.09|ENSG00000186350|chr9:134436487-134436487|G/A|missense_variant;ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENSG00000186350|ENST00000481739|RXRA	ENSG00000186350|ENST00000481739|RXRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.3030700683594	2	470.302927	938.591301	0.2755	0.00012957	-0.07702	-3.6223E-05	0.19848	9.3344E-05	470.3027618226505	67.676	1.1916	67.387	66.749	67.94	-0.28834					67	29	3	0	0	0	0.40693	1	8055	8055		65.465	9.9612	1	1412700			45604	9542	31607	31657	50998	50998					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000186350|ENST00000481739|RXRA;RXRA|p.R421H|1|0.09|ENSG00000186350|chr9:134436487-134436487|G/A|missense_variant;ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENSG00000186350|ENST00000481739|RXRA	ENSG00000186350|ENST00000481739|RXRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.302978515625	2	470.302927	938.591301	0.65479	0.00030795	-0.42237	-0.00019864	0.23242	0.00010931	470.30256604673843	67.433	1.7465	67.457	66.685	68.432	0.023903					75	43	3	0	0	0	0.22902	2	7964	7964;7977		85.161	13.865	1	1512000			45605	9542	31607	31657	50999;51000	50999					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000186350|ENST00000481739|RXRA;RXRA|p.R421H|1|0.09|ENSG00000186350|chr9:134436487-134436487|G/A|missense_variant;ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENSG00000186350|ENST00000481739|RXRA	ENSG00000186350|ENST00000481739|RXRA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.30303955078125	2	470.302927	938.591301	0.83174	0.00039117	-0.61577	-0.0002896	0.21597	0.00010157	470.30248139399515	67.683	1.117	67.428	66.828	67.945	-0.25516					62	26	4	0	0	0	0.30449	3	7780	7780;7791;7804		75.043	8.7443	1	1213100			45606	9542	31607	31657	51001;51002;51003	51001					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000186350|ENST00000481739|RXRA;RXRA|p.R421H|1|0.09|ENSG00000186350|chr9:134436487-134436487|G/A|missense_variant;ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENSG00000186350|ENST00000481739|RXRA	ENSG00000186350|ENST00000481739|RXRA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.3031311035156	2	470.302927	938.591301	0.082924	3.8999E-05	0.035941	1.6903E-05	0.11886	5.5903E-05	470.3028341447277	67.591	1.1893	67.357	66.929	68.119	-0.23376					61	28	3	0	0	0	0.22902	3	7781	7781;7791;7804		85.161	13.283	1	1106300			45607	9542	31607	31657	51004;51005;51006	51004					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000186350|ENST00000481739|RXRA;RXRA|p.R421H|1|0.09|ENSG00000186350|chr9:134436487-134436487|G/A|missense_variant;ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENSG00000186350|ENST00000481739|RXRA	ENSG00000186350|ENST00000481739|RXRA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.3026428222656	2	470.302927	938.591301	-0.56017	-0.00026345	0.72614	0.00034151	0.16597	7.8058E-05	470.303107683184	67.578	1.0736	67.339	66.919	67.992	-0.23814					51	25	3	0	0	0	0.30449	3	7795	7771;7780;7795		75.043	18.322	1	1134100			45608	9542	31607	31657	51007;51008;51009	51009					0.11954941065175717
LPALRYSL	8	Unmodified	_LPALRYSL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.78173828125	2	466.781828	931.549102	-0.20058	-9.3626E-05	-0.27232	-0.00012711	-0.4729	-0.00022074	466.78155772351556	63.127	0.64638	62.943	62.704	63.351	-0.18386					40	15	4	0	0	0	0.50717	1	7124	7124		84.916	5.4645	1	805850			45609	5920	31608	31658	51010	51010					0.08058965656789496
LPALRYSL	8	Unmodified	_LPALRYSL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.7814636230469	2	466.781828	931.549102	0.010784	5.0336E-06	-0.42727	-0.00019944	-0.41648	-0.00019441	466.78150964727774	63.277	0.56349	63.019	62.75	63.313	-0.25824					30	13	3	0	0	0	0.47665	1	7122	7122		87.754	16.459	1	897900			45610	5920	31608	31658	51011	51011					0.08058965656789496
LPALRYSL	8	Unmodified	_LPALRYSL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.781828	931.549102	0.13294	6.2054E-05	-0.5117	-0.00023885	-0.37876	-0.0001768	466.7814572276683	63.222	0.6486	63.001	62.609	63.257	-0.22097	0.01361	-0.0001103	NaN	87.754	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782040			45611	5920	31608	31658							0.08058965656789496
LPALYFMVT	9	Unmodified	_LPALYFMVT_					0	0	0		ENST00000480599.6_1_7:80276056-80276293:+|nuORF	ENST00000480599.6_1_7:80276056-80276293:+|nuORF	ENST00000480599.6_1_7:80276056-80276293:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7639770507812	2	527.785721	1053.55689	-0.4041	-0.00021328	-2.3176	-0.0012232	-2.7217	-0.0014365	527.7846155298062	62.527	0.15349	62.269	62.135	62.289	-0.25824					5	3	2	0	0	0	0.024466	1	7019	7019		18.324	0	1	130820			45612	15205	31609	31659	51012	51012					0.03225356862071749
LPAMPQPTL	9	Unmodified	_LPAMPQPTL_					0	0	0		ENST00000490798.5_1_20:43550276-43564067:+|nuORF	ENST00000490798.5_1_20:43550276-43564067:+|nuORF	ENST00000490798.5_1_20:43550276-43564067:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.2695007324219	2	484.267696	966.520839	-0.20854	-0.00010099	4.0707	0.0019713	3.8621	0.0018703	484.26943259612744	27.014	0.80421	26.858	26.503	27.307	-0.15664					26	18	3	0	0	0	0.27161	1	1441	1441		79.451	13.022	1	523980			45613	15441	31610	31660	51013	51013					0.036238996852148375
LPANPSPVN	9	Unmodified	_LPANPSPVN_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7450256347656	2	454.745442	907.476331	0.47062	0.00021401	-1.899	-0.00086356	-1.4284	-0.00064954	454.74449165346823	101.24	1.4761	101.24	100.76	102.24	-0.0054474					99	33	4	0	0	0	0.87448	1	12875	12875		34.173	0	1	3938500	+		45614	26511	31611	31661	51014	51014					0.01889211863374385
LPAPGIKQGPR	11	Unmodified	_LPAPGIKQGPR_					0	0	0		nc|ENSG00000103269|O75783|RHBDL1	nc|ENSG00000103269|O75783|RHBDL1	nc|ENSG00000103269|O75783|RHBDL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.343017578125	2	567.343115	1132.67168	0.74134	0.00042059	-0.95836	-0.00054372	-0.21702	-0.00012312	567.342480522218	19.956	0.58431	19.732	19.483	20.067	-0.22344					30	11	4	0	0	0	1.0483	1	467	467		25.574	0	1	227810			45615	18140	31612	31662	51015	51015					0.1106480238822769
LPAPLQLC	8	Unmodified	_LPAPLQLC_					0	0	0		ENST00000433411.7_1_17:18062924-18082138:+|nuORF	ENST00000433411.7_1_17:18062924-18082138:+|nuORF	ENST00000433411.7_1_17:18062924-18082138:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.7423095703125	2	427.743857	853.47316	0.45594	0.00019502	-3.8592	-0.0016507	-3.4032	-0.0014557	427.74199434510916	89.595	1.0378	89.608	89.005	90.043	0.013603					68	24	4	0	0	0	1.0017	1	11252	11252		37.028	0	1	1190400			45616	14222	31613	31663	51016	51016					0.040562454850032736
LPAPRYSLV	9	Unmodified	_LPAPRYSLV_					0	0	0			REV__ENST00000342665.4_2_20:307512-307917:+|nuORF	REV__ENST00000342665.4_2_20:307512-307917:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.302001953125	2	508.300384	1014.58622	-0.034944	-1.7762E-05	3.1468	0.0015995	3.1118	0.0015818	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.33245	1	6241	6241		71.296	1.6681	1	8817200	+		45617	30648	31614	31664	51017	51017					0.07950637202566213
LPAPVQLDTP	10	Unmodified	_LPAPVQLDTP_					0	0	0			REV__ENST00000357666.8_1_19:53463395-53466070:-|nuORF	REV__ENST00000357666.8_1_19:53463395-53466070:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3043212890625	2	525.795132	1049.57571	-0.07338	-3.8583E-05	-0.92188	-0.00048472	-0.99526	-0.0005233	525.7943909050289	69.979	0.54022	69.729	69.483	70.023	-0.25063					19	12	2	0	0	0	0.03519	1	8116	8116		32.812	0	1	259490	+		45618	30836	31615	31665	51018	51018					0.05290609757457787
LPAQAKEELA	10	Unmodified	_LPAQAKEELA_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2968139648438	2	535.298039	1068.58152	0.2936	0.00015717	-2.4264	-0.0012988	-2.1328	-0.0011417	535.2966101122423	79.797	1.37	79.55	79.112	80.482	-0.2465					76	32	4	0	0	0	0.64538	1	9530	9530		71.877	4.3838	1	5415900			45619	2635	31616	31666	51019	51019					0.04997708269161194
LPARLPLL	8	Unmodified	_LPARLPLL_					0	0	0		ENST00000272233.5_1_2:20647835-20648045:+|nuORF	ENST00000272233.5_1_2:20647835-20648045:+|nuORF	ENST00000272233.5_1_2:20647835-20648045:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.8023986816406	2	446.802563	891.590573	0.54593	0.00024392	-0.31042	-0.0001387	0.23551	0.00010523	446.80224837639446	71.629	1.0338	71.629	71.339	72.373	0					59	26	3	0	0	0	0.58212	1	8706	8706		77.944	0	1	1886700			45620	11651	31617	31667	51020	51020					0.14044146416131298
LPARLVRSK	9	Unmodified	_LPARLVRSK_					0	0	0			REV__ENSG00000165406|ENST00000453424|MARCHF8	REV__ENSG00000165406|ENST00000453424|MARCHF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.8208618164062	2	520.340375	1038.6662	-0.1586	-8.2526E-05	-1.4516	-0.00075532	-1.6102	-0.00083785	520.3396332412908	80.68	0.60194	80.443	80.206	80.808	-0.23784					21	14	2	0	0	0	0.024523	1	9697	9697		15.642	0	1	212250	+		45621	25883	31618	31668	51021	51021					0.14841123596397665
LPARNNSSN	9	Unmodified	_LPARNNSSN_					0	0	0		ENST00000302188.7_1_2:28055610-28065998:-|nuORF	ENST00000302188.7_1_2:28055610-28065998:-|nuORF	ENST00000302188.7_1_2:28055610-28065998:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2613525390625	2	486.746505	971.478456	-0.16727	-8.142E-05	-4.4336	-0.002158	-4.6009	-0.0022395	486.7444351912304	45.956	0.6986	45.956	45.714	46.412	0					24	19	2	0	0	0	0.024436	1	4556	4556		47.916	26.969	1	210190			45622	11947	31619	31669	51022	51022					-0.008423593988140965
LPARPLPTP	9	Unmodified	_LPARPLPTP_					0	0	0		ENST00000264025.7_1_11:119535043-119535469:-|nuORF	ENST00000264025.7_1_11:119535043-119535469:-|nuORF	ENST00000264025.7_1_11:119535043-119535469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.3136291503906	2	481.295102	960.575651	0.24326	0.00011708	-0.0066162	-3.1844E-06	0.23665	0.0001139	481.29491741236484	68.284	0.64401	68.303	68.042	68.686	0.018913					34	16	3	0	0	0	0.024506	1	8157	8157		23.042	0	1	512690			45623	11549	31620	31670	51023	51023					0.09378654548117993
LPARPLPTP	9	Unmodified	_LPARPLPTP_					0	0	0		ENST00000264025.7_1_11:119535043-119535469:-|nuORF	ENST00000264025.7_1_11:119535043-119535469:-|nuORF	ENST00000264025.7_1_11:119535043-119535469:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.295102	960.575651	0.34647	0.00016675	-0.26933	-0.00012963	0.077135	3.7125E-05	481.29484494079367	68.191	0.68936	68.191	67.831	68.52	0	-0.060796	-0.00012414	NaN	44.117	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536690			45624	11549	31620	31670							0.09378654548117993
LPARPLPTP	9	Unmodified	_LPARPLPTP_					0	0	0		ENST00000264025.7_1_11:119535043-119535469:-|nuORF	ENST00000264025.7_1_11:119535043-119535469:-|nuORF	ENST00000264025.7_1_11:119535043-119535469:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.295102	960.575651	0.27526	0.00013248	-0.017629	-8.4849E-06	0.25763	0.000124	481.29481602055876	68.554	0.69836	68.261	67.936	68.634	-0.29267	0.0091759	0.00011814	NaN	44.117	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513500			45625	11549	31620	31670							0.09378654548117993
LPARSRVAARA	11	Unmodified	_LPARSRVAARA_					0	0	0		ENST00000426537.1_1_21:47705768-47706077:-|nuORF	ENST00000426537.1_1_21:47705768-47706077:-|nuORF	ENST00000426537.1_1_21:47705768-47706077:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.3563232421875	2	584.357088	1166.69962	-0.28947	-0.00016916	-1.1987	-0.00070044	-1.4881	-0.0008696	584.3562979173006	90.97	2.9599	90.83	89.916	92.876	-0.13942					132	70	2	0	0	0	1.0429	1	11156	11156		27.047	5.3616	1	758900			45626	14088	31621	31671	51024	51024					0.122941253683166
LPASAHAGP	9	Unmodified	_LPASAHAGP_					0	0	0		nc|ENSG00000171695|Q8TD35-2|LKAAEAR1	nc|ENSG00000171695|Q8TD35-2|LKAAEAR1	nc|ENSG00000171695|Q8TD35-2|LKAAEAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.7188415527344	2	410.719227	819.423902	-0.18606	-7.6417E-05	-0.79238	-0.00032545	-0.97844	-0.00040186	410.7188202086517	96.155	1.7784	95.999	95.4	97.178	-0.15646					90	40	4	0	0	0	0.98128	1	11862	11862		24.203	0	1	1136900			45627	18515	31622	31672	51025	51025					0.006966735204287033
LPASAWHS	8	Unmodified	_LPASAWHS_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7719421386719	2	434.719227	867.423902	-0.64003	-0.00027823	-1.1134	-0.00048403	-1.7535	-0.00076226	434.71880547243256	25.487	0.28793	25.452	25.351	25.639	-0.034395					9	6	2	0	0	0	0.027866	1	1219	1219		35.201	6.0512	1	72976			45628	5422	31623	31673	51026	51026					-0.015113264795786563
LPASGRSAEV	10	Unmodified	_LPASGRSAEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	493.7691955566406	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.538	1	32.538	32.038	33.038	0								0	0	0	0.31772	1	2264	2264		75.043	1.0686	1				45629	10702	31624	31674	51027	51027					0.025919819208070294
LPASGRSAEV	10	Unmodified	_LPASGRSAEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	493.76690673828125	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.618	1	32.618	32.118	33.118	0								0	0	0	0.2121	1	2277	2277		88.177	11.403	1				45630	10702	31624	31674	51028	51028					0.025919819208070294
LPASGRSAEV	10	Unmodified	_LPASGRSAEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	493.76678466796875	2	493.766906	985.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.69	1	32.69	32.19	33.19	0								0	0	0	0.18711	1	2289	2289		106.68	24.443	1				45631	10702	31624	31674	51029	51029					0.025919819208070294
LPASGRSAEV	10	Unmodified	_LPASGRSAEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7669677734375	2	493.766906	985.519259	-0.51211	-0.00025286	1.0506	0.00051877	0.53852	0.0002659	493.7673688033522	32.497	1.0303	32.509	31.902	32.933	0.011799					51	26	3	0	0	0	0.34816	3	2249	2236;2249;2260		104.01	26.406	1	4453200			45632	10702	31624	31674	51030;51031;51032	51031					0.025919819208070294
LPASGRSAEV	10	Unmodified	_LPASGRSAEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.76666259765625	2	493.766906	985.519259	-0.30587	-0.00015103	1.2809	0.00063247	0.97504	0.00048144	493.7677496911234	32.31	1.367	32.373	31.399	32.766	0.062885					62	34	3	0	0	0	0.37307	3	2192	2178;2192;2203		101.46	28.581	1	4302000			45633	10702	31624	31674	51033;51034;51035	51034					0.025919819208070294
LPASGTPLI	9	Unmodified	_LPASGTPLI_					0	0	0		YEATS2-HTR3C|1|fusion;ENSG00000178084|ENST00000318351|HTR3C	YEATS2-HTR3C|1|fusion	YEATS2-HTR3C|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7718505859375	2	434.760561	867.506569	-0.49495	-0.00021518	-3.6509	-0.0015873	-4.1458	-0.0018024	434.75908948281483	25.466	0.41965	25.466	25.403	25.823	0					10	9	2	0	0	0	0.024386	1	1211	1211		25.45	0	1	249110			45634	38163	31625	31675	51036	51036					0.06751570528570028
LPASSGRLP	9	Unmodified	_LPASSGRLP_					0	0	0			REV__nc|ENSG00000125813|P15863-2|PAX1	REV__nc|ENSG00000125813|P15863-2|PAX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.2616882324219	2	449.261259	896.507966	0.10115	4.5441E-05	0.062765	2.8198E-05	0.16391	7.3639E-05	449.2611045981265	41.32	1.0194	41.343	40.97	41.99	0.023006					101	28	6	0	0	0	0.43973	1	3650	3650		63.306	0	1	5774200	+		45635	36638	31626	31676	51037	51037					0.05557204617343814
LPASWRLVRP	10	Unmodified	_LPASWRLVRP_					0	0	0		ENST00000539208.5_1_9:36258326-36258398:-|nuORF	ENST00000539208.5_1_9:36258326-36258398:-|nuORF	ENST00000539208.5_1_9:36258326-36258398:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	597.858932	1193.70331	-1.1131	-0.00066547	-2.6265	-0.0015703	-3.7396	-0.0022358	598.3593015087366	90.895	2.4279	90.77	89.373	91.801	-0.12512					145	57	3	0	0	0	1.1088	1	11245	11245		31.53	0	1	2839900			45636	16398	31627	31677	51038	51038					0.11420795142180395
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2770690917969	2	481.276909	960.539266	-0.27917	-0.00013436	-0.20692	-9.9586E-05	-0.4861	-0.00023395	481.27671081382266	48.336	1.0661	48.239	47.892	48.958	-0.097553					73	28	4	0	0	0	0.077175	4	4805	4780;4793;4805;4818		118.74	22.553	1	8731500			45637	10532	31628	31678	51039;51040;51041;51042	51041					0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.27655029296875	2	481.276909	960.539266	-1.1019	-0.00053031	0.58241	0.0002803	-0.51948	-0.00025001	481.27710416826363	48.676	1.0104	48.397	48.078	49.088	-0.27813					76	27	5	0	0	0	0.16638	4	4842	4817;4830;4842;4855		95.815	21.56	1	8890300			45638	10532	31628	31678	51043;51044;51045;51046	51045					0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.2768249511719	2	481.276909	960.539266	0.13353	6.4267E-05	-0.6871	-0.00033069	-0.55357	-0.00026642	481.27650619191155	48.502	1.0559	48.32	47.983	49.039	-0.18206					76	28	4	0	0	0	0.091713	4	4804	4793;4804;4816;4830		113.41	28.496	1	9063800			45639	10532	31628	31678	51047;51048;51049;51050	51048					0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.276909	960.539266	-0.21797	-0.00010491	-0.43399	-0.00020887	-0.65196	-0.00031377	481.27651280359555	48.444	0.37617	48.444	48.243	48.619	0	0.066751	-0.00029352	NaN	118.74	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609260			45640	10532	31628	31678							0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.276909	960.539266	-0.38702	-0.00018626	-0.033022	-1.5893E-05	-0.42004	-0.00020216	481.2767134114056	48.592	0.3856	48.439	48.261	48.646	-0.15277	0.061634	9.2433E-05	NaN	118.74	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577200			45641	10532	31628	31678							0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.276909	960.539266	-0.38356	-0.0001846	-0.099835	-4.8048E-05	-0.48339	-0.00023265	481.2766767903595	48.359	0.43435	48.426	48.154	48.588	0.066795	0.048297	2.8122E-05	NaN	118.74	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543950			45642	10532	31628	31678							0.05741777651417124
LPATRIPDP	9	Unmodified	_LPATRIPDP_					0	0	0		ENSG00000149792|ENST00000279242|MRPL49	ENSG00000149792|ENST00000279242|MRPL49	ENSG00000149792|ENST00000279242|MRPL49	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2593688964844	2	490.282192	978.549831	-0.012038	-5.9019E-06	2.6557	0.0013021	2.6437	0.0012961	490.28409337035964	102.22	0.26442	102.22	102.11	102.37	-0.0054474					6	5	2	0	0	0	0.024506	1	13015	13015		30.504	5.9844	1	15356			45643	6121	31629	31679	51051	51051					0.059697603058339155
LPATRLAPIP	10	Unmodified	_LPATRLAPIP_					0	0	0			REV__ENSG00000163909|ENST00000372852|HEYL	REV__ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.8269653320312	2	524.829309	1047.64407	-0.67594	-0.00035475	-3.8331	-0.0020117	-4.509	-0.0023665	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	1.0271	1	12524	12524		42.396	6.7778	1	14120000	+		45644	25656	31630	31680	51052	51052					0.12214899127957324
LPAVPSLSSW	10	Unmodified	_LPAVPSLSSW_					0	0	0			REV__ENST00000549529.1_1_12:96649292-96660955:+|nuORF	REV__ENST00000549529.1_1_12:96649292-96660955:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2568359375	2	528.78985	1055.56515	-1.0652	-0.00056325	3.2804	0.0017346	2.2152	0.0011714	528.7915678333417	44.804	0.31528	44.704	44.513	44.828	-0.099445					13	7	2	0	0	0	0.03519	1	4199	4199		27.882	3.6795	1	159530	+		45645	21896	31631	31681	51053	51053					0.03958627103043
LPCAWVKP	8	Unmodified	_LPCAWVKP_					0	0	0		ENST00000544665.7_1_16:31343440-31343671:+|nuORF	ENST00000544665.7_1_16:31343440-31343671:+|nuORF	ENST00000544665.7_1_16:31343440-31343671:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.76776123046875	2	457.251849	912.489145	-0.39869	-0.0001823	0.26039	0.00011907	-0.13829	-6.3235E-05	457.2513736861574	32.997	0.84017	32.831	32.355	33.195	-0.16565					30	20	2	0	0	0	0.027866	1	2274	2274		35.201	10.998	1	260840			45646	16484	31632	31682	51054	51054					0.029399517219189875
LPCDKLLVS	9	Unmodified	_LPCDKLLVS_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3154602050781	2	494.280803	986.547053	0.11391	5.6302E-05	3.8855	0.0019205	3.9994	0.0019768	494.282438347022	19.868	0.24632	19.868	19.782	20.028	0					7	4	2	0	0	0	0.024541	1	459	459		17.365	0	1	19587			45647	9488	31633	31683	51055	51055					0.053241688566799894
LPCELASYW	9	Unmodified	_LPCELASYW_					0	0	0			REV__ENST00000588595.5_1_19:9939136-9939352:+|nuORF	REV__ENST00000588595.5_1_19:9939136-9939352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.801025390625	2	541.254785	1080.49502	-0.53614	-0.00029019	-3.3977	-0.001839	-3.9339	-0.0021292	541.2532206681483	34.696	0.72808	34.49	34.043	34.771	-0.20696					26	17	2	0	0	0	0.024541	1	2539	2539		17.365	0	1	82276	+		45648	35644	31634	31684	51056	51056					-0.04200994557095328
LPCELDFY	8	Unmodified	_LPCELDFY_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2076721191406	2	500.228236	998.44192	-0.88947	-0.00044494	3.6795	0.0018406	2.79	0.0013956	500.2292195260455	42.912	0.54111	42.686	42.484	43.025	-0.22597					18	13	2	0	0	0	0.027866	1	3900	3900		52.299	13.493	1	200900			45649	1119	31635	31685	51057	51057					-0.05736372339742957
LPCKTVTLL	9	Unmodified	_LPCKTVTLL_					0	0	0			REV__ENST00000393414.6_1_2:102626170-102632427:+|nuORF	REV__ENST00000393414.6_1_2:102626170-102632427:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.286865234375	2	494.298996	986.583439	0.032691	1.6159E-05	-2.9637	-0.001465	-2.931	-0.0014488	494.2980090763507	67.767	0.7532	67.479	67.148	67.901	-0.28834					28	18	2	0	0	0	0.023635	1	8045	8045		56.721	22.549	1	876130	+		45650	31645	31636	31686	51058	51058					0.08961045753414965
LPCPLLTGL	9	Unmodified	_LPCPLLTGL_					0	0	0		ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.77593994140625	2	463.772614	925.530675	-0.29238	-0.0001356	4.2269	0.0019603	3.9345	0.0018247	463.774487627089	47.307	0.73473	47.307	47.076	47.811	0					48	21	3	0	0	0	0.10076	2	4715	4715;4719		110.34	30.398	1	9512000			45651	16400	31637	31687	51059;51060	51059					0.06493087690591892
LPCPLLTGL	9	Unmodified	_LPCPLLTGL_					0	0	0		ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7747802734375	2	463.772614	925.530675	0.29055	0.00013475	3.624	0.0016807	3.9145	0.0018155	463.77420809585686	47.472	0.76969	47.319	47.089	47.858	-0.15301					51	22	3	0	0	0	0.15889	2	4731	4719;4731		97.473	13.681	1	9341000			45652	16400	31637	31687	51061;51062	51062					0.06493087690591892
LPCPLLTGL	9	Unmodified	_LPCPLLTGL_					0	0	0		ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7744445800781	2	463.772614	925.530675	-0.17289	-8.0183E-05	4.0412	0.0018742	3.8683	0.001794	463.77440666679087	47.277	0.76873	47.336	47.032	47.8	0.059097					49	22	3	0	0	0	0.15889	2	4656	4656;4694		97.473	4.2772	1	9153100			45653	16400	31637	31687	51063;51064	51063					0.06493087690591892
LPCPPPFKPP	10	Unmodified	_LPCPPPFKPP_					0	0	0			REV__ENST00000447574.1_1_7:75933094-75933362:+|nuORF	REV__ENST00000447574.1_1_7:75933094-75933362:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.29833984375	2	546.799163	1091.58377	-0.20468	-0.00011192	1.5882	0.0008684	1.3835	0.00075649	546.800145954818	55.148	0.66117	54.942	54.722	55.383	-0.20613					24	18	2	0	0	0	0.03519	1	5957	5957		42.396	3.3746	1	728650	+		45654	32651	31638	31688	51065	51065					0.041644654732408526
LPCRNNQKV	9	Unmodified	_LPCRNNQKV_					0	0	0			REV__ENST00000477012.5_1_3:141461724-141464116:+|nuORF	REV__ENST00000477012.5_1_3:141461724-141464116:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3117065429688	2	536.290025	1070.5655	0.50437	0.00027049	1.8704	0.0010031	2.3748	0.0012736	536.293037839235	59.276	0.18856	59.276	59.182	59.37	0					7	4	2	0	0	0	0.022924	1	6753	6753		63.306	0	1	79363	+		45655	22108	31639	31689	51066	51066					0.0330372355124382
LPCRSSLPSC	10	Unmodified	_LPCRSSLPSC_					0	0	0			REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF	REV__ENST00000586915.1_1_19:45495538-45496152:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.8152465820312	2	531.757169	1061.49979	-0.031193	-1.6587E-05	1.2114	0.00064417	1.1802	0.00062759	531.7591137375366	87.567	0.12822	87.431	87.346	87.474	-0.13613					4	2	2	0	0	0	0.03519	1	10653	10653		25.574	0	1	19822	+		45656	35613	31640	31690	51067	51067					-0.028504336859441537
LPCRVFLKN	9	Unmodified	_LPCRVFLKN_					0	0	0		ENSG00000103227|ENST00000262301|LMF1;ENST00000568897.5_1_16:1004355-1020830:-|nuORF;ENST00000566609.1_1_16:1002623-1020980:-|nuORF	ENSG00000103227|ENST00000262301|LMF1	ENSG00000103227|ENST00000262301|LMF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.31689453125	2	545.315512	1088.61647	-0.30487	-0.00016625	2.306	0.0012575	2.0012	0.0010913	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.70186	1	10825	10825		45.952	5.1738	1	3635800			45657	2484	31641	31691	51068	51068					0.07570672596102668
LPCSHRESVN	10	Unmodified	_LPCSHRESVN_					0	0	0			REV__ENSG00000203737|ENST00000367685|GPR52	REV__ENSG00000203737|ENST00000367685|GPR52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2963256835938	2	571.274572	1140.53459	-0.5266	-0.00030083	-1.8559	-0.0010602	-2.3825	-0.0013611	571.2710764995234	61.36	0.69273	61.103	60.771	61.464	-0.25725					60	16	5	0	0	0	0.03519	1	6857	6857		31.53	13.205	1	1188300	+		45658	28543	31642	31692	51069	51069					-0.030054745536517657
LPCTVVAH	8	Unmodified	_LPCTVVAH_					0	0	0			REV__ENSG00000215012|ENST00000328554|RTL10	REV__ENSG00000215012|ENST00000328554|RTL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.2409973144531	2	420.225831	838.437109	0.17806	7.4826E-05	-0.88782	-0.00037309	-0.70976	-0.00029826	420.2245947144258	24.039	0.48886	23.824	23.51	23.999	-0.2151					14	10	2	0	0	0	0.027866	1	1020	1020		29.842	1.5873	1	42396	+		45659	28796	31643	31693	51070	51070					0.01142788308152376
LPDAEADGAGE	11	Unmodified	_LPDAEADGAGE_					0	0	0			REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.291259765625	2	522.727643	1043.44073	-0.33655	-0.00017592	0.88041	0.00046022	0.54386	0.00028429	522.7279231829035	57.003	0.51565	56.839	56.606	57.122	-0.16431					22	14	2	0	0	0	0.02479	1	6352	6352		42.864	0	1	228840	+		45660	19675	31644	31694	51071	51071					-0.0792491517495364
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.2899169921875	2	522.290214	1042.56587	-0.84995	-0.00044392	1.6916	0.00088348	0.8416	0.00043956	522.290386490559	56.924	0.96044	56.924	56.643	57.603	0					59	26	3	0	0	0	0.15388	3	6399	6374;6386;6399		98.582	32.153	1	15461000			45661	2285	31645	31695	51072;51073;51074	51074					0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.2897338867188	2	522.290214	1042.56587	-0.19336	-0.00010099	0.85479	0.00044645	0.66144	0.00034546	522.290012293837	57.089	0.97835	56.925	56.641	57.619	-0.16431					49	26	2	0	0	0	0.20652	3	6363	6363;6375;6386		88.177	21.748	1	13003000			45662	2285	31645	31695	51075;51076;51077	51075					0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2899780273438	2	522.290214	1042.56587	-0.32947	-0.00017208	1.4296	0.00074666	1.1001	0.00057458	522.2901675062254	56.802	1.0341	56.9	56.51	57.544	0.097603					68	28	4	0	0	0	0.20652	3	6280	6257;6280;6295		88.177	16.881	1	14080000			45663	2285	31645	31695	51078;51079;51080	51079					0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.290214	1042.56587	0.43464	0.00022701	-0.55541	-0.00029009	-0.12077	-6.3079E-05	522.2899210997017	57.113	0.61335	56.911	56.633	57.247	-0.20209	-0.01725	-0.00062182	NaN	98.582	59	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3323700			45664	2285	31645	31695							0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.290214	1042.56587	-0.02362	-1.2336E-05	0.28606	0.00014941	0.26244	0.00013707	522.2901927147079	57.207	0.9705	56.982	56.621	57.592	-0.22479	0.053549	0.00025716	NaN	98.582	58	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3427200			45665	2285	31645	31695							0.046294217521108294
LPDFLICKL	9	Unmodified	_LPDFLICKL_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.305908203125	2	531.306821	1060.59909	0.051488	2.7356E-05	1.9987	0.0010619	2.0502	0.0010893	531.3077544987628	58.802	1.5172	58.802	58.228	59.745	0					95	34	5	0	0	0	0.12602	1	6736	6736		104.75	6.1172	1	28545000			45666	10229	31646	31696	51081	51081					0.0712133227045797
LPDFLICKL	9	Unmodified	_LPDFLICKL_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3078002929688	2	531.306821	1060.59909	1.1779	0.00062581	1.099	0.00058392	2.2769	0.0012097	531.3072905690176	59.034	1.4286	58.847	58.311	59.74	-0.18705					94	32	5	0	0	0	0.14024	2	6712	6712;6726		101.6	8.4052	1	37009000			45667	10229	31646	31696	51082;51083	51082					0.0712133227045797
LPDLKIHIN	9	Unmodified	_LPDLKIHIN_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8174438476562	2	531.818941	1061.62333	0.17298	9.1995E-05	-4.1238	-0.0021931	-3.9509	-0.0021011	531.8166531068138	85.355	2.6332	85.16	83.7	86.333	-0.19508					190	61	4	0	0	0	0.87448	1	10475	10475		34.173	0.65696	1	1282000			45668	1119	31647	31697	51084	51084					0.09498308748334239
LPDLKIHIN	9	Unmodified	_LPDLKIHIN_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8165283203125	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.85329	1	10534	10534		35.618	5.1146	1	4853400			45669	1119	31647	31697	51085	51085					0.09498308748334239
LPDLKIHIN	9	Unmodified	_LPDLKIHIN_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8163452148438	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	0.82115	1	10335	10335		37.812	2.1932	1	1297700			45670	1119	31647	31697	51086	51086					0.09498308748334239
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.58209228515625	3	423.582221	1267.72483	-1.3041	-0.0005524	0.9909	0.00041973	-0.31321	-0.00013267	423.5825055596696	44.07	0.87253	44.07	43.475	44.348	0					77	24	4	0	0	0	0.67481	1	4173	4173		65.278	15.742	1	2448100			45671	2550	31648	31698	51087	51087					0.10168135380240528
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	423.582221	1267.72483	-0.05659	-2.397E-05	-0.091855	-3.8908E-05	-0.14844	-6.2879E-05	423.5820903061088	44.084	0.94846	44.121	43.528	44.476	0.0369	0.032308	-0.00089997	NaN	65.278	77	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2512500			45672	2550	31648	31698							0.10168135380240528
LPDLSVFQN	9	Unmodified	_LPDLSVFQN_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2;ENST00000582788.5_1_17:37856514-37872404:+|nuORF	nc|ENSG00000141736|P04626-5|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2921752929688	2	516.771657	1031.52876	-0.22934	-0.00011852	3.6397	0.0018809	3.4104	0.0017624	516.7728111184691	63.347	0.82909	63.347	62.729	63.558	0					25	21	2	0	0	0	0.02435	1	7327	7327		42.396	8.8806	1	505990			45673	5518	31649	31699	51088	51088					0.014257502063401262
LPDNLGLSH	9	Unmodified	_LPDNLGLSH_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102106264-102108393:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.302490234375	2	483.256174	964.497795	-0.43013	-0.00020786	-2.7518	-0.0013298	-3.182	-0.0015377	483.25601856636575	73.527	0.92815	73.262	72.638	73.566	-0.26479					44	22	3	0	0	0	0.024506	1	8655	8655		30.504	1.3541	1	182160			45674	6861	31650	31700	51089	51089					0.01412596892100737
LPDPGAHPIL	10	Unmodified	_LPDPGAHPIL_					0	0	0		ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7694702148438	2	515.290017	1028.56548	0.46853	0.00024143	-2.8504	-0.0014688	-2.3819	-0.0012274	515.2893497585841	50.791	0.55498	50.611	50.39	50.945	-0.18071					35	14	4	0	0	0	0.03519	1	5142	5142		16.473	0	1	404470			45675	16647	31651	31701	51090	51090					0.05234046822897653
LPDQRVLRC	9	Unmodified	_LPDQRVLRC_					0	0	0			REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2	REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.3060913085938	2	550.305675	1098.5968	-0.23515	-0.0001294	0.36913	0.00020313	0.13398	7.3729E-05	550.3056695295984	16.588	0.30823	16.38	16.211	16.519	-0.20777					19	10	3	0	0	0	0.83071	1	74	74		37.159	1.5408	1	50314	+		45676	25973	31652	31702	51091	51091					0.05144296585331176
LPDRWIIL	8	Unmodified	_LPDRWIIL_					0	0	0		nc|ENSG00000164520|Q8TD07-5|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;RAET1E|p.N250Mfs*11|1|0.46|ENSG00000164520|chr6:149888541-149888541|T/-|frameshift_variant	nc|ENSG00000164520|Q8TD07-5|RAET1E	nc|ENSG00000164520|Q8TD07-5|RAET1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3079223632812	2	513.310752	1024.60695	-1.2025	-0.00061726	-3.4516	-0.0017718	-4.6541	-0.002389	513.3090625074976	44.386	0.60716	44.386	44.151	44.758	0					35	17	3	0	0	0	0.50239	1	4241	4241		85.359	3.0545	1	4384400			45677	7288	31653	31703	51092	51092					0.09563227582248146
LPDSIGYLN	9	Unmodified	_LPDSIGYLN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2923278808594	2	496.258382	990.502212	0.14392	7.142E-05	-2.119	-0.0010516	-1.975	-0.00098013	496.2576839386077	68.112	0.52064	67.874	67.549	68.07	-0.23814					13	12	2	0	0	0	0.024436	1	7878	7878		38.806	0	1	131210	+		45678	25017	31654	31704	51093	51093					0.00658061315004943
LPDYEKAI	8	Unmodified	_LPDYEKAI_					0	0	0			REV__ENSG00000184209|ENST00000526639|SNRNP35	REV__ENSG00000184209|ENST00000526639|SNRNP35	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.755615234375	2	474.755475	947.496398	0.77263	0.00036681	-0.69324	-0.00032912	0.079396	3.7694E-05	474.7549621228199	54.606	0.67202	54.4	54.122	54.794	-0.20613					42	17	3	0	0	0	0.42327	1	5800	5800		94.006	9.0909	1	2221900	+		45679	27646	31655	31705	51094	51094					0.02054962803322269
LPEEKIAPI	9	Unmodified	_LPEEKIAPI_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.32373046875	2	505.30005	1008.58555	0.41058	0.00020747	3.441	0.0017388	3.8516	0.0019462	505.3014062545899	79.089	0.63097	78.834	78.514	79.145	-0.25471					22	14	2	0	0	0	0.023596	1	9457	9457		73.975	28.023	1	241300	+		45680	26456	31656	31706	51095	51095					0.0815979776284621
LPEFLDFTS	9	Unmodified	_LPEFLDFTS_					0	0	0			REV__ENSG00000140526|ENST00000352732|ABHD2	REV__ENSG00000140526|ENST00000352732|ABHD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.3175048828125	2	534.76604	1067.51753	-0.75086	-0.00040153	-3.3534	-0.0017933	-4.1043	-0.0021948	534.7641532436177	33.836	0.35236	33.636	33.404	33.756	-0.20019					13	8	2	0	0	0	0.024412	1	2411	2411		24.203	5.9407	1	110500	+		45681	24026	31657	31707	51096	51096					-0.013530718877973413
LPEGQELKTL	10	Unmodified	_LPEGQELKTL_					0	0	0			REV__ENST00000599671.1_1_19:52399719-52400225:-|nuORF	REV__ENST00000599671.1_1_19:52399719-52400225:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.22705078125	2	564.318971	1126.62339	-0.92894	-0.00052422	-1.9856	-0.0011205	-2.9145	-0.0016447	564.3176725232778	37.326	0.50444	37.106	36.807	37.311	-0.2195					26	12	3	0	0	0	0.03519	1	3000	3000		39.253	12.56	1	343220	+		45682	28384	31658	31708	51097	51097					0.0651426395766066
LPEKLPNLN	9	Unmodified	_LPEKLPNLN_					0	0	0			REV__nc|ENSG00000008282|Q16563|SYPL1	REV__nc|ENSG00000008282|Q16563|SYPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.3240966796875	2	519.303124	1036.5917	-0.46194	-0.00023989	0.11804	6.1297E-05	-0.3439	-0.00017859	519.3030931193532	41.045	0.59965	41.068	40.864	41.464	0.023006					35	16	3	0	0	0	0.024495	1	3630	3630		26.693	10.22	1	655450	+		45683	19878	31659	31709	51098	51098					0.07486315994378856
LPEKPIVE	8	Unmodified	_LPEKPIVE_					0	0	0			REV__ENSG00000120278|ENST00000696526|PLEKHG1	REV__ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	462.773668	923.532783	-0.45765	-0.00021179	-3.5622	-0.0016485	-4.0198	-0.0018603	462.7721200636258	23.276	1.6306	23.215	22.097	23.727	-0.06086					124	36	5	0	0	0	0.78609	1	878	878		60.294	2.4827	1	26985000	+		45684	22522	31660	31710	51099	51099					0.06795839700043871
LPELRSLL	8	Unmodified	_LPELRSLL_					0	0	0		nc|ENSG00000215845|Q8NFU3-3|TSTD1;ENST00000486084.1_1_1:161008305-161008679:-|nuORF;ENSG00000215845|ENST00000423014|TSTD1;nc|ENSG00000215845|Q8NFU3-4|TSTD1	nc|ENSG00000215845|Q8NFU3-3|TSTD1	nc|ENSG00000215845|Q8NFU3-3|TSTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7955017089844	2	470.794935	939.575317	0.095809	4.5107E-05	-0.53674	-0.00025269	-0.44093	-0.00020759	470.79457097464905	42.623	1.4486	42.5	42.155	43.603	-0.12299					92	38	5	0	0	0	0.38451	2	3862	3851;3862		99.375	0	1	6323500			45685	18724	31661	31711	51100;51101	51101					0.10311234828293436
LPELRSLL	8	Unmodified	_LPELRSLL_					0	0	0		nc|ENSG00000215845|Q8NFU3-3|TSTD1;ENST00000486084.1_1_1:161008305-161008679:-|nuORF;ENSG00000215845|ENST00000423014|TSTD1;nc|ENSG00000215845|Q8NFU3-4|TSTD1	nc|ENSG00000215845|Q8NFU3-3|TSTD1	nc|ENSG00000215845|Q8NFU3-3|TSTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.795654296875	2	470.794935	939.575317	-0.16722	-7.8727E-05	-0.45342	-0.00021347	-0.62064	-0.00029219	470.79462391555353	42.777	1.2262	42.54	42.229	43.455	-0.23706					91	32	5	0	0	0	0.4075	1	3874	3874		96.19	0	1	7099200			45686	18724	31661	31711	51102	51102					0.10311234828293436
LPEPHSDAE	9	Unmodified	_LPEPHSDAE_					0	0	0			REV__ENST00000527623.1_1_19:46891683-46893600:+|nuORF	REV__ENST00000527623.1_1_19:46891683-46893600:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.3212890625	2	497.727446	993.44034	-0.40635	-0.00020225	1.399	0.00069634	0.99269	0.00049409	497.7281261729724	48.633	0.17582	48.7	48.588	48.764	0.066799					6	4	2	0	0	0	0.024412	1	4916	4916		24.203	1.1603	1	62439	+		45687	34478	31662	31712	51103	51103					-0.05664290104141401
LPEPIWQP	8	Unmodified	_LPEPIWQP_					0	0	0		ENST00000474797.1_1_10:105211283-105211340:-|nuORF	ENST00000474797.1_1_10:105211283-105211340:-|nuORF	ENST00000474797.1_1_10:105211283-105211340:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.74322509765625	2	490.26601	978.517468	-0.35488	-0.00017398	-4.2798	-0.0020982	-4.6347	-0.0022722	490.263781925088	31.753	0.60137	31.753	31.428	32.03	0					20	14	2	0	0	0	0.027866	1	2135	2135		52.299	32.939	1	203390			45688	15042	31663	31713	51104	51104					0.027349729028628644
LPERQLGL	8	Unmodified	_LPERQLGL_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.276611328125	2	463.276909	924.539266	0.15038	6.9669E-05	-0.073317	-3.3966E-05	0.077066	3.5703E-05	463.2767385481598	56.431	1.1114	56.529	56.173	57.284	0.097893					73	30	4	0	0	0	0.89627	1	6229	6229		51.335	0	1	4737600	+		45689	24569	31664	31714	51105	51105					0.07397777651419801
LPESLAEAR	9	Unmodified	_LPESLAEAR_					0	0	0			REV__ENSG00000131375|ENST00000253693|CAPN7	REV__ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.28692626953125	2	493.269281	984.52401	-0.53142	-0.00026213	-1.3048	-0.00064361	-1.8362	-0.00090574	493.26942942799025	22.443	0.31848	22.258	22.142	22.46	-0.18539					13	6	3	0	0	0	0.024263	1	774	774		51.335	19.806	1	106890	+		45690	23203	31665	31715	51106	51106					0.031128660635772576
LPETLQTLP	9	Unmodified	_LPETLQTLP_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.30078125	2	506.289682	1010.56481	-0.90683	-0.00045912	-1.7746	-0.00089845	-2.6814	-0.0013576	506.2887330020489	25.191	0.65263	25.191	24.874	25.527	0					34	15	3	0	0	0	0.024319	1	1133	1133		47.657	1.7054	1	645920			45691	10603	31666	31716	51107	51107					0.059952073831937014
LPETLQTLP	9	Unmodified	_LPETLQTLP_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3009338378906	2	506.289682	1010.56481	0.24641	0.00012476	-3.1237	-0.0015815	-2.8773	-0.0014567	506.2880867971685	25.077	0.92389	25.157	24.825	25.749	0.08009					37	21	3	0	0	0	0.024418	1	1078	1078		54.776	17.617	1	591560			45692	10603	31666	31716	51108	51108					0.059952073831937014
LPEVAGLELL	10	Unmodified	_LPEVAGLELL_					0	0	0			REV__nc|ENSG00000165309|Q5W041-3|ARMC3	REV__nc|ENSG00000165309|Q5W041-3|ARMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.845458984375	2	527.313158	1052.61176	-0.45997	-0.00024255	1.3199	0.00069602	0.85998	0.00045348	527.3133899338653	55.869	0.60316	55.869	55.536	56.139	0					35	16	3	0	0	0	0.03519	1	6166	6166		29.15	0	1	462100	+		45693	25872	31667	31717	51109	51109					0.08756066934324735
LPEVILLLP	9	Unmodified	_LPEVILLLP_					0	0	0		ENST00000407418.7_1_22:39262088-39262175:-|nuORF	ENST00000407418.7_1_22:39262088-39262175:-|nuORF	ENST00000407418.7_1_22:39262088-39262175:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7719421386719	2	503.830986	1005.64742	-0.53852	-0.00027132	-2.6244	-0.0013223	-3.1629	-0.0015936	503.829493510919	48.85	0.46635	48.697	48.433	48.9	-0.15277					18	12	2	0	0	0	0.024443	1	5003	5003		26.796	13.837	1	173930			45694	13747	31668	31718	51110	51110					0.14482149182003923
LPEVQLLL	8	Unmodified	_LPEVQLLL_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	462.791861	923.569169	-0.47709	-0.00022079	1.0669	0.00049376	0.58984	0.00027297	462.7931247483086	23.426	0.44508	23.366	23.069	23.514	-0.060862					17	10	2	0	0	0	0.027866	1	878	878		65.803	7.9919	1	65826			45695	1376	31669	31719	51111	51111					0.10432716596767477
LPEVRARV	8	Unmodified	_LPEVRARV_					0	0	0		ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2904357910156	2	470.290351	938.566149	-0.37865	-0.00017807	-0.022154	-1.0419E-05	-0.4008	-0.00018849	470.2903111115177	28.017	1.3316	28.017	27.616	28.947	0					75	32	4	0	0	0	0.68535	1	1596	1596		68.485	5.1784	1	6756000			45696	7372	31670	31720	51112	51112					0.09440886262609638
LPEVRARV	8	Unmodified	_LPEVRARV_					0	0	0		ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2898864746094	2	470.290351	938.566149	-0.64738	-0.00030446	0.54189	0.00025485	-0.10549	-4.9612E-05	470.29056172467494	27.873	1.2832	27.705	27.402	28.686	-0.16816					73	30	5	0	0	0	0.81662	1	1569	1569		57.811	4.4598	1	5857400			45697	7372	31670	31720	51113	51113					0.09440886262609638
LPFAYCNI	8	Unmodified	_LPFAYCNI_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.7631530761719	2	470.733489	939.452425	-0.48955	-0.00023045	0.3322	0.00015638	-0.15735	-7.4072E-05	470.7335343691407	35.925	0.7752	35.72	35.467	36.242	-0.20518					37	21	2	0	0	0	0.027866	1	2765	2765		42.474	0	1	1072900			45698	1705	31671	31721	51114	51114					-0.01972344894647904
LPFCPPVVL	9	Unmodified	_LPFCPPVVL_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.7821350097656	2	492.782982	983.55141	0.13961	6.8797E-05	0.80965	0.00039898	0.94926	0.00046778	492.7837819100149	49.302	1.3132	49.12	48.702	50.016	-0.18206					70	34	4	0	0	0	0.65391	1	4945	4945		49.211	1.5535	1	1163300			45699	2823	31672	31722	51115	51115					0.05897678070243728
LPFDSLIVNL	10	Unmodified	_LPFDSLIVNL_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.8251342773438	2	565.826432	1129.63831	0.524	0.00029649	-0.48504	-0.00027445	0.038962	2.2046E-05	565.8259664119463	100.95	0.74007	100.82	100.63	101.37	-0.12576					37	18	3	0	0	0	0.74632	1	12539	12539		64.207	3.2353	1	338530			45700	6692	31673	31723	51116	51116					0.07867755825691347
LPFDSLIVNL	10	Unmodified	_LPFDSLIVNL_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8267822265625	2	565.826432	1129.63831	0.38588	0.00021834	0.14121	7.99E-05	0.52709	0.00029824	565.8266447914776	105.27	0.28355	105.1	104.98	105.26	-0.16484					14	9	3	0	0	0	0.28861	1	13093	13093		110.12	27.369	1	348100			45701	6692	31673	31723	51117	51117					0.07867755825691347
LPFDSLIVNL	10	Unmodified	_LPFDSLIVNL_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	565.826432	1129.63831	-0.74926	-0.00042395	1.4882	0.00084204	0.73891	0.00041809	565.8273496493603	105.46	0.16798	105.33	105.26	105.43	-0.13099	0.17005	0.0017094	NaN	110.12	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228490			45702	6692	31673	31723							0.07867755825691347
LPFDSRQPP	9	Unmodified	_LPFDSRQPP_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7793579101562	2	528.777274	1055.53999	1.2382	0.00065472	2.0539	0.001086	3.292	0.0017408	528.778198615853	17.186	0.30292	17.032	16.907	17.209	-0.15403					13	5	3	0	0	0	0.94809	1	163	163		29.15	1.2673	1	166960	+		45703	19918	31674	31724	51118	51118					0.01444572300465552
LPFFIVFTTV	10	Unmodified	_LPFFIVFTTV_					0	0	0		nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18	nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	592.866943359375	2	592.341718	1182.66888	0.36437	0.00021583	-3.9353	-0.0023311	-3.571	-0.0021152	592.3395344535294	102.81	0.3029	102.81	102.64	102.94	-0.0046005					15	7	3	0	0	0	0.03519	1	13117	13117		14.865	0	1	118880			45704	7846	31675	31725	51119	51119					0.08485534210694823
LPFGIALPI	9	Unmodified	_LPFGIALPI_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.3106689453125	2	470.796946	939.57934	-0.099053	-4.6634E-05	-3.5744	-0.0016828	-3.6734	-0.0017294	470.79489615896796	48.746	0.35518	48.594	48.364	48.719	-0.15277					14	9	2	0	0	0	0.024389	1	4967	4967		39.021	0	1	90896			45705	6319	31676	31726	51120	51120					0.10713324321989148
LPFIHFLM	8	Unmodified	_LPFIHFLM_					0	0	0		ENST00000585090.1_1_18:3249478-3249580:+|nuORF	ENST00000585090.1_1_18:3249478-3249580:+|nuORF	ENST00000585090.1_1_18:3249478-3249580:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.7626037597656	2	509.283149	1016.55174	-1.3693	-0.00069734	-2.5836	-0.0013158	-3.9529	-0.0020131	509.2817569950783	65.493	1.0666	65.28	64.93	65.996	-0.21327					61	25	3	0	0	0	0.027866	1	7472	7472		33.493	5.6107	1	990860			45706	17220	31677	31727	51121	51121					0.04413097790109077
LPFIMRLI	8	Unmodified	_LPFIMRLI_					0	0	0		ENST00000361298.8_2_X:102632758-102632785:+|nuORF	ENST00000361298.8_2_X:102632758-102632785:+|nuORF	ENST00000361298.8_2_X:102632758-102632785:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.801025390625	2	501.812073	1001.60959	0.02644	1.3268E-05	1.6165	0.00081117	1.6429	0.00082444	501.81262920977724	46.119	0.35493	46.119	45.953	46.308	0					17	9	2	0	0	0	0.027866	1	4564	4564		15.636	8.4429	1	293900			45707	12792	31678	31728	51122	51122					0.10885359715530285
LPFLRITSL	9	Unmodified	_LPFLRITSL_					0	0	0		nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF	nc|ENSG00000144357|Q6ZT12-3|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.3313598632812	2	530.331685	1058.64882	-0.91202	-0.00048367	0.82471	0.00043737	-0.087303	-4.6299E-05	530.3319432049624	79.535	1.2548	79.535	79.16	80.415	0					42	29	2	0	0	0	0.17845	1	9876	9876		93.143	16.297	1	683350			45708	5729	31679	31729	51123	51123					0.12183783270756976
LPFLRITSL	9	Unmodified	_LPFLRITSL_					0	0	0		nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF	nc|ENSG00000144357|Q6ZT12-3|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.3314819335938	2	530.331685	1058.64882	0.47198	0.00025031	-0.27942	-0.00014818	0.19257	0.00010212	530.3313417532971	79.464	0.91624	79.217	78.906	79.822	-0.2465					53	21	4	0	0	0	0.1158	1	9497	9497		107.01	29.69	1	1059000			45709	5729	31679	31729	51124	51124					0.12183783270756976
LPFLRITSL	9	Unmodified	_LPFLRITSL_					0	0	0		nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF	nc|ENSG00000144357|Q6ZT12-3|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.3319091796875	2	530.331685	1058.64882	-0.19994	-0.00010604	0.3016	0.00015995	0.10166	5.3914E-05	530.3315909283914	79.471	0.8295	79.252	78.914	79.744	-0.21923					54	19	4	0	0	0	0.1158	2	9516	9516;9529		107.01	19.311	1	1053400			45710	5729	31679	31729	51125;51126	51125					0.12183783270756976
LPFLRITSL	9	Unmodified	_LPFLRITSL_					0	0	0		nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF	nc|ENSG00000144357|Q6ZT12-3|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3318481445312	2	530.331685	1058.64882	0.15927	8.4467E-05	0.060591	3.2133E-05	0.21986	0.0001166	530.3314353400998	79.371	0.87524	79.221	78.821	79.696	-0.15051					50	20	4	0	0	0	0.086035	2	9478	9478;9489		115.49	35.13	1	1068300			45711	5729	31679	31729	51127;51128	51127					0.12183783270756976
LPFPGPFCPQ	10	Unmodified	_LPFPGPFCPQ_					0	0	0		nc|ENSG00000106410|O60393-2|NOBOX;ENSG00000106410|ENST00000467773|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.782958984375	2	551.773145	1101.53174	-1.3197	-0.00072815	4.1654	0.0022984	2.8458	0.0015702	551.774944575994	27.144	0.14456	27.226	27.1	27.245	0.081293					5	3	2	0	0	0	0.03519	1	1387	1387		6.7355	0	1	37231			45712	2788	31680	31730	51129	51129					-0.0149669794050169
LPFPLEPAP	9	Unmodified	_LPFPLEPAP_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2595520019531	2	490.776211	979.537869	-0.11876	-5.8285E-05	2.0346	0.00099854	1.9159	0.00094026	490.77618246013543	101.78	0.63774	101.79	101.56	102.2	0.0073471					23	14	2	0	0	0	0.024541	1	13042	13042		19.36	1.0356	1	98616			45713	6886	31681	31731	51130	51130					0.047281435626587154
LPFPLEPAP	9	Unmodified	_LPFPLEPAP_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.776211	979.537869	-0.024402	-1.1976E-05	0.67168	0.00032965	0.64728	0.00031767	490.77616449413904	101.62	0.4512	101.49	101.27	101.72	-0.13156	-0.099472	0.00030564	NaN	19.36	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59104			45714	6886	31681	31731							0.047281435626587154
LPFPLEPAP	9	Unmodified	_LPFPLEPAP_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.776211	979.537869	0.37466	0.00018388	-0.33633	-0.00016506	0.038329	1.8811E-05	490.77562699836625	101.67	0.48875	101.49	101.33	101.82	-0.17178	-0.098462	-0.00068378	NaN	19.36	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64311			45715	6886	31681	31731							0.047281435626587154
LPFPSRFSPP	10	Unmodified	_LPFPSRFSPP_					0	0	0			REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.8375854492188	2	572.811116	1143.60768	-0.13097	-7.5023E-05	-4.345	-0.0024889	-4.476	-0.0025639	572.8083945976965	62.446	0.54874	62.225	61.767	62.316	-0.22097					27	13	3	0	0	0	0.03519	1	6968	6968		21.96	7.095	1	1223000	+		45716	35940	31682	31732	51131	51131					0.04162022231298579
LPFPSRFSPP	10	Unmodified	_LPFPSRFSPP_					0	0	0			REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	572.811116	1143.60768	-1.5889	-0.00091015	-10.553	-0.0060446	-12.142	-0.0069548	572.8055408589262	61.85	0.43676	61.85	61.643	62.08	0	-0.28506	-0.0076744	NaN	21.96	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106600	+		45717	35940	31682	31732							0.04162022231298579
LPFPSRFSPP	10	Unmodified	_LPFPSRFSPP_					0	0	0			REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	REV__ENST00000606994.1_1_5:32174612-32175047:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	572.811116	1143.60768	-0.8568	-0.00049078	-3.1205	-0.0017875	-3.9773	-0.0022783	572.8091443375258	62.354	0.61707	62.176	61.766	62.383	-0.17781	0.0414	0.00083995	NaN	21.96	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1274600	+		45718	35940	31682	31732							0.04162022231298579
LPFPVGIL	8	Unmodified	_LPFPVGIL_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2559509277344	2	428.270564	854.526576	-1.0521	-0.00045057	1.9658	0.00084191	0.91376	0.00039134	428.27120732399806	44.537	0.30824	44.537	44.314	44.622	0					10	8	2	0	0	0	0.027866	1	4255	4255		33.493	0	1	73666	+		45719	28318	31683	31733	51132	51132					0.0934936625917544
LPFTLVLNK	9	Unmodified	_LPFTLVLNK_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7646484375	2	522.826235	1043.63792	-0.91856	-0.00048025	-3.7213	-0.0019456	-4.6398	-0.0024258	522.8240621971263	30.283	0.66276	30.357	30.129	30.792	0.074316					44	15	4	0	0	0	0.024523	1	1848	1848		29.15	6.1071	1	1112600	+		45720	22560	31684	31734	51133	51133					0.11784380896460789
LPFVIGAGVLG	11	Unmodified	_LPFVIGAGVLG_					0	0	0		ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7930297851562	2	521.81841	1041.62227	-0.58643	-0.00030601	-2.9594	-0.0015443	-3.5458	-0.0018503	521.8166059714601	38.23	0.46851	38.011	37.681	38.15	-0.21848					21	13	2	0	0	0	0.02474	1	3071	3071		31.955	5.2619	1	163250			45721	10804	31685	31735	51134	51134					0.10312094379423797
LPFVIGAGVLG	11	Unmodified	_LPFVIGAGVLG_					0	0	0		ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.81841	1041.62227	-1.7939	-0.00093612	-3.0283	-0.0015802	-4.8223	-0.0025163	521.8166581758344	38.106	0.45047	38.106	37.869	38.319	0	0.067002	0.00033486	NaN	24.203	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346650			45722	10804	31685	31735							0.10312094379423797
LPFVIGAGVLG	11	Unmodified	_LPFVIGAGVLG_					0	0	0		ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.81841	1041.62227	-1.179	-0.00061523	-3.6669	-0.0019134	-4.8459	-0.0025287	521.8164100440093	38.073	0.40464	37.991	37.777	38.182	-0.082512	-0.048026	-0.00033155	NaN	24.203	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369120			45723	10804	31685	31735							0.10312094379423797
LPFVIGAGVLG	11	Unmodified	_LPFVIGAGVLG_					0	0	0		ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	ENSG00000242950|ENST00000603053|ERVW-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.81841	1041.62227	-1.8253	-0.00095245	-3.8433	-0.0020055	-5.6685	-0.0029579	521.8169328853991	38.237	0.82848	38.264	38.057	38.886	0.027279	0.22573	-0.00051566	NaN	24.203	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301420			45724	10804	31685	31735							0.10312094379423797
LPFVLHSLR	9	Unmodified	_LPFVLHSLR_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.8005981445312	2	541.329476	1080.6444	-0.37958	-0.00020548	-1.79	-0.00096897	-2.1696	-0.0011745	541.3284874524837	17.907	0.54706	17.701	17.464	18.011	-0.20669					13	10	2	0	0	0	0.024541	1	210	210		23.042	3.6825	1	21007			45725	8826	31686	31736	51135	51135					0.1073031884784541
LPFVSLGL	8	Unmodified	_LPFVSLGL_					0	0	0		nc|ENSG00000080822|Q9NY35-2|CLDND1;ENSG00000080822|ENST00000341181|CLDND1;ENST00000507411.5_1_3:98235680-98240280:-|nuORF;nc|ENSG00000080822|Q9NY35-3|CLDND1	nc|ENSG00000080822|Q9NY35-2|CLDND1	nc|ENSG00000080822|Q9NY35-2|CLDND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.7195129394531	2	423.260197	844.50584	0.038745	1.6399E-05	-4.1775	-0.0017682	-4.1388	-0.0017518	423.25834839500186	39.816	0.61319	39.816	39.562	40.176	0					32	16	3	0	0	0	0.027866	1	3464	3464		74.517	23.181	1	633180			45726	1696	31687	31737	51136	51136					0.07736775879516244
LPFWAVSH	8	Unmodified	_LPFWAVSH_					0	0	0		ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3006591796875	2	478.75307	955.491587	-0.70687	-0.00033842	-0.95265	-0.00045609	-1.6595	-0.0007945	478.75253796291105	38.067	0.48156	38.067	37.803	38.284	0					24	14	2	0	0	0	0.027866	1	3127	3127		54.765	12.29	1	427230			45727	3214	31688	31738	51137	51137					0.012061234512316332
LPFYKRIL	8	Unmodified	_LPFYKRIL_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.810546875	2	525.328945	1048.64334	-0.76066	-0.00039959	0.58369	0.00030663	-0.17697	-9.2966E-05	525.3290606675114	56.146	1.1417	55.931	55.489	56.631	-0.21551					63	29	3	0	0	0	0.027866	1	6034	6034		12.959	0	1	1216700			45728	1645	31689	31739	51138	51138					0.1209610447895102
LPFYLIPPSAT	11	Unmodified	_LPFYLIPPSAT_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.8944396972656	3	406.897147	1217.66961	-0.24688	-0.00010046	-2.3279	-0.00094723	-2.5748	-0.0010477	406.89599935306836	20.525	0.73951	20.301	19.973	20.712	-0.22344					31	14	4	0	0	0	1.0563	1	535	535		23.378	0.81632	1	191780			45729	4754	31690	31740	51139	51139					0.06948328859766661
LPGASPLLSRL	11	Unmodified	_LPGASPLLSRL_					0	0	0			REV__ENST00000457956.1_2_21:18984036-18985245:-|nuORF	REV__ENST00000457956.1_2_21:18984036-18985245:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.3444213867188	2	562.345323	1122.67609	0.019553	1.0995E-05	-3.5399	-0.0019906	-3.5203	-0.0019796	562.3432261733831	89.202	2.5118	89.064	88.274	90.786	-0.13762					130	59	3	0	0	0	0.99689	1	10930	10930		37.508	11.934	1	606860	+		45730	32815	31691	31741	51140	51140					0.11966266811123205
LPGASPLLSRL	11	Unmodified	_LPGASPLLSRL_					0	0	0			REV__ENST00000457956.1_2_21:18984036-18985245:-|nuORF	REV__ENST00000457956.1_2_21:18984036-18985245:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	562.345323	1122.67609	0.17417	9.7945E-05	-3.7702	-0.0021202	-3.596	-0.0020222	562.3430483292168	89.096	2.7198	89.075	88.223	90.943	-0.021645	-0.00043306	-0.00049925	NaN	37.508	152	64	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541230	+		45731	32815	31691	31741							0.11966266811123205
LPGASPLLSRL	11	Unmodified	_LPGASPLLSRL_					0	0	0			REV__ENST00000457956.1_2_21:18984036-18985245:-|nuORF	REV__ENST00000457956.1_2_21:18984036-18985245:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	562.345323	1122.67609	-0.05709	-3.2104E-05	-3.522	-0.0019806	-3.5791	-0.0020127	562.3431716522971	89.104	2.6335	89.12	88.321	90.955	0.015907	0.044432	-0.00022007	NaN	37.508	158	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479950	+		45732	32815	31691	31741							0.11966266811123205
LPGCQRHPHP	10	Unmodified	_LPGCQRHPHP_					0	0	0		nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.2263793945312	2	571.287817	1140.56108	0.30721	0.00017551	-4.274	-0.0024417	-3.9668	-0.0022662	571.2851990054105	50.655	0.47612	50.474	50.209	50.685	-0.18071					27	12	3	0	0	0	0.03519	1	5177	5177		20.947	0	1	479790			45733	18726	31692	31742	51141	51141					-0.0035774087166373647
LPGELFHVV	9	Unmodified	_LPGELFHVV_					0	0	0		ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	ENSG00000164603|ENST00000297145|BMT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3109130859375	2	505.78711	1009.55967	-0.33557	-0.00016973	-3.2307	-0.001634	-3.5663	-0.0018038	505.7854509608145	48.429	1.2608	48.496	47.936	49.197	0.066795					71	34	4	0	0	0	0.024386	1	4826	4826		33.516	0	1	1701500			45734	7298	31693	31743	51142	51142					0.05526948311239721
LPGGCILH	8	Unmodified	_LPGGCILH_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	2	405.220549	808.426544	0.44494	0.0001803	3.3787	0.0013691	3.8236	0.0015494	405.222644984484	26.828	0.13043	26.659	26.55	26.68	-0.16816					4	2	2	0	0	0	0.027866	1	1421	1421		10.185	5.8685	1	18714	+		45735	25396	31694	31744	51143	51143					0.014668056537288976
LPGGGSRR	8	Unmodified	_LPGGGSRR_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.8948059082031	2	400.230294	798.446034	0.12699	5.0826E-05	-1.7234	-0.00068975	-1.5964	-0.00063893	400.229130338241	26.257	0.77818	26.234	25.998	26.776	-0.023088					24	18	2	0	0	0	0.027866	1	1354	1354		26.796	0	1	115860	+		45736	27196	31695	31745	51144	51144					0.038748979888509893
LPGGPRVLLSP	11	Unmodified	_LPGGPRVLLSP_					0	0	0		ENST00000372099.10_1_9:135906218-135906281:+|nuORF	ENST00000372099.10_1_9:135906218-135906281:+|nuORF	ENST00000372099.10_1_9:135906218-135906281:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.217041015625	2	553.340041	1104.66553	0.051888	2.8712E-05	4.2243	0.0023375	4.2762	0.0023662	553.3420926291896	69.695	0.70409	69.444	69.196	69.9	-0.25063					30	16	3	0	0	0	0.024732	1	8160	8160		40.778	20.781	1	205370			45737	13026	31696	31746	51145	51145					0.11738284156717782
LPGGPRVLLSP	11	Unmodified	_LPGGPRVLLSP_					0	0	0		ENST00000372099.10_1_9:135906218-135906281:+|nuORF	ENST00000372099.10_1_9:135906218-135906281:+|nuORF	ENST00000372099.10_1_9:135906218-135906281:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.340041	1104.66553	-0.54806	-0.00030327	4.4735	0.0024754	3.9255	0.0021721	553.3422732779807	69.82	0.58655	69.553	69.287	69.874	-0.26725	0.062992	0.00034665	NaN	19.104	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182400			45738	13026	31696	31746							0.11738284156717782
LPGGPRVLLSP	11	Unmodified	_LPGGPRVLLSP_					0	0	0		ENST00000372099.10_1_9:135906218-135906281:+|nuORF	ENST00000372099.10_1_9:135906218-135906281:+|nuORF	ENST00000372099.10_1_9:135906218-135906281:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.340041	1104.66553	-0.1487	-8.2282E-05	3.8135	0.0021102	3.6648	0.0020279	553.3420400125686	69.695	0.62167	69.472	69.226	69.847	-0.22245	-0.017385	-0.00038376	NaN	19.104	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215090			45739	13026	31696	31746							0.11738284156717782
LPGHQKRIL	9	Unmodified	_LPGHQKRIL_					0	0	0		ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2892456054688	2	531.33255	1060.65055	-0.64193	-0.00034108	-1.4591	-0.00077525	-2.101	-0.0011163	531.3316203873202	55.405	0.32553	55.174	54.963	55.288	-0.23087					14	9	2	0	0	0	0.024517	1	5913	5913		12.959	0	1	182820			45740	5918	31697	31747	51146	51146					0.12264837079374047
LPGHTVAVL	9	Unmodified	_LPGHTVAVL_					0	0	0			REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.77386474609375	2	453.774003	905.533452	0.86217	0.00039123	-0.69273	-0.00031434	0.16944	7.6886E-05	453.77354935809143	71.995	0.9956	71.995	71.377	72.373	0					50	25	3	0	0	0	0.4855	2	8742	8742;8754		60.294	5.4411	1	1493600	+		45741	35900	31698	31748	51147;51148	51147					0.076906791397505
LPGHTVAVL	9	Unmodified	_LPGHTVAVL_					0	0	0			REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	453.774003	905.533452	0.86217	0.00039123	-0.69273	-0.00031434	0.16944	7.6886E-05	453.77354935809143	71.995	0.9956	71.995	71.377	72.373	0	0.012037	-7.244E-05	NaN	60.294	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1493600	+		45742	35900	31698	31748							0.076906791397505
LPGHTVAVL	9	Unmodified	_LPGHTVAVL_					0	0	0			REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	453.774003	905.533452	0.77571	0.000352	-0.63505	-0.00028817	0.14066	6.3828E-05	453.77357947416414	72.243	0.88914	71.961	71.658	72.547	-0.28124	-0.021422	-2.0095E-05	NaN	60.294	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1316900	+		45743	35900	31698	31748							0.076906791397505
LPGHTVAVL	9	Unmodified	_LPGHTVAVL_					0	0	0			REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	453.774003	905.533452	0.64721	0.00029369	-0.52508	-0.00023827	0.12213	5.5417E-05	453.77361645922275	71.982	0.90265	71.992	71.508	72.411	0.0097733	0.0093847	7.9711E-05	NaN	60.294	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1719400	+		45744	35900	31698	31748							0.076906791397505
LPGKKVHS	8	Unmodified	_LPGKKVHS_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|59|1|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|59|1|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|59|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.77679443359375	2	433.266345	864.518136	0.023206	1.0054E-05	0.087232	3.7795E-05	0.11044	4.7849E-05	433.26635971946365	31.998	0.34093	31.84	31.694	32.035	-0.15772					10	7	2	0	0	0	0.027866	1	2135	2135		31.955	7.7521	1	79529			45745	17907	31699	31749	51149	51149					0.08045812342561476
LPGKQGLPE	9	Unmodified	_LPGKQGLPE_					0	0	0		ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.75494384765625	2	469.768917	937.523281	-0.42398	-0.00019917	0.35834	0.00016834	-0.065638	-3.0834E-05	469.76888756483714	37.61	0.84638	37.546	37.091	37.937	-0.063385					56	23	3	0	0	0	0.024487	1	3058	3058		31.955	18.996	1	1166800			45746	7961	31700	31750	51150	51150					0.0520207141452147
LPGLRCPKAGK	11	Unmodified	_LPGLRCPKAGK_					0	0	0		nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.3455810546875	2	570.339518	1138.66448	-1.2097	-0.00068996	-2.531	-0.0014435	-3.7407	-0.0021335	570.3380536653373	35.98	0.76136	35.937	35.447	36.208	-0.042454					33	20	2	0	0	0	0.024738	1	2738	2738		26.693	7.5894	1	172630			45747	18332	31701	31751	51151	51151					0.10069746516137457
LPGLRCPKAGK	11	Unmodified	_LPGLRCPKAGK_					0	0	0		nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	570.339518	1138.66448	-1.5402	-0.00087843	-5.812	-0.0033148	-7.3522	-0.0041933	570.8377215244273	35.707	0.19721	35.707	35.531	35.728	0	-0.11494	-0.0031624	NaN	34.173	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40790			45748	18332	31701	31751							0.10069746516137457
LPGLVWGRGP	10	Unmodified	_LPGLVWGRGP_					0	0	0			REV__nc|ENSG00000160401|Q5JU67-2|CFAP157	REV__nc|ENSG00000160401|Q5JU67-2|CFAP157	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.3094482421875	2	526.306001	1050.59745	4.88	0.0025684	1.1124	0.00058546	5.9924	0.0031538	526.306438750117	17.946	0.479	18.006	17.825	18.304	0.06036					19	10	3	0	0	0	1.1259	1	200	200		24.203	3.7209	1	89038	+		45749	36834	31702	31752	51152	51152					0.07417459296721063
LPGPLMRLY	9	Unmodified	_LPGPLMRLY_					0	0	0			REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.2557983398438	2	530.304613	1058.59467	-0.15146	-8.0321E-05	0.33377	0.000177	0.18231	9.6678E-05	530.3053052945133	28.548	0.33192	28.628	28.452	28.784	0.080811					10	7	2	0	0	0	0.024443	1	1604	1604		19.36	1.0356	1	92035	+		45750	19159	31703	31753	51153	51153					0.06771867847533031
LPGPLMRLY	9	Unmodified	_LPGPLMRLY_					0	0	0			REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.304613	1058.59467	-0.84184	-0.00044643	3.3807	0.0017928	2.5388	0.0013463	530.3062164359777	28.96	0.29927	28.791	28.598	28.897	-0.16897	0.031513	0.0010423	NaN	19.36	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60689	+		45751	19159	31703	31753							0.06771867847533031
LPGPLMRLY	9	Unmodified	_LPGPLMRLY_					0	0	0			REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.304613	1058.59467	-0.41243	-0.00021871	2.7085	0.0014363	2.2961	0.0012176	530.3060743660216	29.009	0.34162	28.859	28.615	28.956	-0.14952	0.099671	0.00032941	NaN	19.36	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63971	+		45752	19159	31703	31753							0.06771867847533031
LPGPLRGAC	9	Unmodified	_LPGPLRGAC_					0	0	0		ENST00000254436.7_1_11:4411412-4414892:-|nuORF	ENST00000254436.7_1_11:4411412-4414892:-|nuORF	ENST00000254436.7_1_11:4411412-4414892:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2312316894531	2	442.244555	882.474557	0.073041	3.2302E-05	0.61727	0.00027299	0.69031	0.00030529	442.2440655814215	47.088	0.4419	46.894	46.712	47.154	-0.19387					20	11	3	0	0	0	0.024386	1	4606	4606		33.516	0	1	89228			45753	11379	31704	31754	51154	51154					0.028618795737770597
LPGRAPAVP	9	Unmodified	_LPGRAPAVP_					0	0	0			REV__ENSG00000197063|ENST00000357736|MAFG	REV__ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2663879394531	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	0.90698	1	4012	4012		31.955	5.1588	1	3361200	+		45754	28258	31705	31755	51155	51155					0.07493812342556794
LPGRLSPPH	9	Unmodified	_LPGRLSPPH_					0	0	0		ENST00000374316.9_1_6:33588911-33589319:+|nuORF	ENST00000374316.9_1_6:33588911-33589319:+|nuORF	ENST00000374316.9_1_6:33588911-33589319:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.27996826171875	2	487.282526	972.550499	-0.6437	-0.00031366	-3.1503	-0.0015351	-3.794	-0.0018487	487.28046722512994	23.391	1.0118	23.33	22.844	23.856	-0.060862					49	23	3	0	0	0	0.43973	1	911	911		63.306	17.354	1	1029800			45755	13111	31706	31756	51156	51156					0.06312599745569969
LPGRNEVAL	9	Unmodified	_LPGRNEVAL_					0	0	0		nc|ENSG00000205057|Q5K130|CLLU1-AS1	nc|ENSG00000205057|Q5K130|CLLU1-AS1	nc|ENSG00000205057|Q5K130|CLLU1-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7796325683594	2	484.779816	967.545079	-0.64244	-0.00031144	-0.4186	-0.00020293	-1.061	-0.00051437	484.7795833142868	38.801	0.73925	38.801	38.515	39.254	0					48	19	4	0	0	0	0.27161	1	3278	3278		79.451	4.4077	1	4830800			45756	18667	31707	31757	51157	51157					0.06000876163091107
LPGSGKSFLAR	11	Unmodified	_LPGSGKSFLAR_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.8271484375	2	566.827298	1131.64004	-0.89125	-0.00050518	0.45325	0.00025692	-0.43799	-0.00024827	566.8274553648066	52.89	2.2809	52.986	51.723	54.004	0.095669					149	61	4	0	0	0	0.67171	1	5628	5628		65.465	8.7443	1	3234400			45757	1631	31708	31758	51158	51158					0.07948809634262943
LPGSRTRPLP	10	Unmodified	_LPGSRTRPLP_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.8306274414062	2	547.327465	1092.64038	0.61373	0.00033591	0.21157	0.0001158	0.8253	0.00045171	547.8297113703293	18.498	1.0366	18.341	17.755	18.792	-0.15637					45	20	5	0	0	0	1.1286	1	305	305		25.574	0	1	221980	+		45758	19984	31709	31759	51159	51159					0.0977622935411091
LPGTSPPASL	10	Unmodified	_LPGTSPPASL_					0	0	0		ENST00000608648.1_1_19:18233497-18234133:+|nuORF	ENST00000608648.1_1_19:18233497-18234133:+|nuORF	ENST00000608648.1_1_19:18233497-18234133:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.29058837890625	2	470.260925	938.507297	-0.59954	-0.00028194	-0.40948	-0.00019256	-1.009	-0.0004745	470.2601259191319	27.918	0.4842	27.766	27.438	27.922	-0.15195					18	11	2	0	0	0	0.03519	1	1564	1564		42.396	5.237	1	102840			45759	17596	31710	31760	51160	51160					0.035583651776164515
LPGVPTEL	8	Unmodified	_LPGVPTEL_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.2379455566406	2	413.239461	824.46437	0.37943	0.00015679	-3.07	-0.0012686	-2.6905	-0.0011118	413.2380803151311	89.748	1.1119	89.762	89.297	90.409	0.013443					62	26	4	0	0	0	1.0574	1	11249	11249		26.796	1.3459	1	1651200	+		45760	36998	31711	31761	51161	51161					0.04511595120175116
LPGVPTEL	8	Unmodified	_LPGVPTEL_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.237548828125	2	413.239461	824.46437	-0.82222	-0.00033977	-1.5829	-0.00065411	-2.4051	-0.00099388	413.23867503470103	89.937	1.1672	89.775	89.343	90.51	-0.1626					65	27	4	0	0	0	1.0574	1	10985	10985		26.796	0	1	1502100	+		45761	36998	31711	31761	51162	51162					0.04511595120175116
LPGVVLES	8	Unmodified	_LPGVVLES_					0	0	0			REV__nc|ENSG00000131480|O75106-2|AOC2	REV__nc|ENSG00000131480|O75106-2|AOC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8789978027344	2	407.239461	812.46437	0.3701	0.00015072	-3.5461	-0.0014441	-3.176	-0.0012934	407.23782315197246	20.354	0.67675	20.186	19.767	20.444	-0.16774					31	13	3	0	0	0	0.027866	1	516	516		20.482	0	1	270490	+		45762	23216	31712	31762	51163	51163					0.050635951201911666
LPHAETNFVY	10	Unmodified	_LPHAETNFVY_					0	0	0			REV__ENSG00000177239|ENST00000371589|MAN1B1	REV__ENSG00000177239|ENST00000371589|MAN1B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.79541015625	2	595.795663	1189.57677	-1.1266	-0.00067121	1.3089	0.00077982	0.18231	0.00010862	595.7963833398851	61.125	0.84253	60.872	60.544	61.387	-0.25373					63	20	4	0	0	0	1.0002	1	6799	6799		45.972	5.1941	1	3782800	+		45763	27096	31713	31763	51164	51164					-0.010431758736103802
LPHAPGVQM	9	Unmodified	_LPHAPGVQM_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.24957275390625	2	475.249837	948.485122	1.3316	0.00063284	-1.559	-0.00074091	-0.22738	-0.00010806	475.2489744054795	49.457	1.1197	49.457	48.83	49.949	0					79	30	4	0	0	0	0.12366	3	5119	5097;5107;5119		105.27	39.466	1	5837800			45764	9897	31714	31764	51165;51166;51167	51167					0.008818622282092292
LPHAPGVQM	9	Unmodified	_LPHAPGVQM_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.249755859375	2	475.249837	948.485122	0.44619	0.00021205	-0.61244	-0.00029106	-0.16626	-7.9014E-05	475.24939433316297	49.652	1.1617	49.5	48.936	50.098	-0.1512					81	31	4	0	0	0	0.12366	3	5139	5115;5126;5139		105.27	20.158	1	5820500			45765	9897	31714	31764	51168;51169;51170	51170					0.008818622282092292
LPHAPGVQM	9	Unmodified	_LPHAPGVQM_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.24932861328125	2	475.249837	948.485122	-1.1374	-0.00054053	1.1488	0.00054596	0.011417	5.4261E-06	475.25025461905756	49.338	1.1054	49.413	48.807	49.912	0.074192					79	29	4	0	0	0	0.088511	3	5012	5012;5021;5034		114.59	40.611	1	5887000			45766	9897	31714	31764	51171;51172;51173	51171					0.008818622282092292
LPHAPGVQM	9	Oxidation (M)	_LPHAPGVQM(Oxidation (M))_		LPHAPGVQM(1)		LPHAPGVQM(110)	0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.2469482421875	2	483.247295	964.480036	-0.9926	-0.00047967	0.80083	0.000387	-0.19176	-9.2669E-05	483.24755555784395	40.232	1.5156	40.255	39.774	41.29	0.023006					75	42	4	0	0	0	0.10076	1	3457	3457		110.34	33.491	1	3308900			45767	9897	31714	31765	51174	51174		410			-0.0036244163439960175
LPHAPGVQM	9	Oxidation (M)	_LPHAPGVQM(Oxidation (M))_					0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.247295	964.480036	0.32732	0.00015818	-0.59125	-0.00028572	-0.26393	-0.00012754	483.2468701091638	40.034	1.3053	40.034	39.495	40.8	0	-0.069194	-0.00052237	NaN	110.34	69	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2493000			45768	9897	31714	31765				410			-0.0036244163439960175
LPHAPGVQM	9	Oxidation (M)	_LPHAPGVQM(Oxidation (M))_					0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.247295	964.480036	-0.39319	-0.00019001	0.19132	9.2457E-05	-0.20187	-9.7552E-05	483.2472209635283	40.133	1.3106	40.021	39.534	40.844	-0.11222	-0.082097	0.00023399	NaN	110.34	73	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2380700			45769	9897	31714	31765				410			-0.0036244163439960175
LPHEECLWL	9	Unmodified	_LPHEECLWL_					0	0	0			REV__nc|ENSG00000198720|Q86YJ7-2|ANKRD13B	REV__nc|ENSG00000198720|Q86YJ7-2|ANKRD13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7972412109375	2	570.281334	1138.54812	-0.79345	-0.00045249	-1.9721	-0.0011246	-2.7655	-0.0015771	570.2807855962537	44.457	0.38062	44.352	44.168	44.549	-0.10468					22	9	3	0	0	0	0.024466	1	4181	4181		33.516	11.556	1	540450	+		45770	19140	31715	31766	51175	51175					-0.0156161677439286
LPHEECLWL	9	Unmodified	_LPHEECLWL_					0	0	0			REV__nc|ENSG00000198720|Q86YJ7-2|ANKRD13B	REV__nc|ENSG00000198720|Q86YJ7-2|ANKRD13B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	570.281334	1138.54812	-0.85777	-0.00048917	-1.3068	-0.00074526	-2.1646	-0.0012344	570.2806280546254	44.685	0.4158	44.474	44.221	44.637	-0.21109	0.068893	0.00019305	NaN	33.516	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461800	+		45771	19140	31715	31766							-0.0156161677439286
LPHERVRLN	9	Unmodified	_LPHERVRLN_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A;REV__nc|ENSG00000054523|O60333-3|KIF1B;REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3292846679688	2	567.330539	1132.64652	0.34076	0.00019332	-1.6564	-0.00093973	-1.3156	-0.0007464	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	0.89441	1	11249	11249		32.812	0	1	4116000	+		45772	36457;20189;23099	31716	31767	51176	51176					0.0855074758567298
LPHGAGHLAF	10	Unmodified	_LPHGAGHLAF_					0	0	0		ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENSG00000227057|ENST00000374617|WDR46	ENSG00000227057|ENST00000374617|WDR46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2636413574219	2	510.274701	1018.53485	0.12102	6.1752E-05	1.8625	0.00095038	1.9835	0.0010121	510.2752812658946	80.963	0.6869	80.725	80.409	81.096	-0.23784					31	16	3	0	0	0	0.03519	1	9725	9725		19.36	0	1	170240			45773	10668	31717	31768	51177	51177					0.02632313228525618
LPHHLWPL	8	Unmodified	_LPHHLWPL_					0	0	0		ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.8241882324219	2	506.789987	1011.56542	-0.3145	-0.00015939	4.15	0.0021032	3.8355	0.0019438	506.7913963507707	43.137	0.32758	42.997	42.846	43.174	-0.13929					11	8	2	0	0	0	0.027866	1	4007	4007		24.504	0	1	90548			45774	12356	31718	31769	51178	51178					0.06010091613552504
LPHIPWTI	8	Unmodified	_LPHIPWTI_					0	0	0		ENST00000259318.7_1_9:112898482-112898686:+|nuORF	ENST00000259318.7_1_9:112898482-112898686:+|nuORF	ENST00000259318.7_1_9:112898482-112898686:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2500305175781	2	488.78437	975.554188	-0.4524	-0.00022113	-0.2729	-0.00013339	-0.7253	-0.00035451	488.78398822283697	33.468	0.55756	33.237	32.997	33.554	-0.23107					29	13	3	0	0	0	0.027866	1	2404	2404		28.254	0	1	411650			45775	11432	31719	31770	51179	51179					0.06543269519409023
LPHNRLVSL	9	Unmodified	_LPHNRLVSL_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2537841796875	2	524.816733	1047.61891	-0.30935	-0.00016235	0.23084	0.00012115	-0.078511	-4.1204E-05	524.8167625597259	45.27	0.74544	45.059	44.637	45.382	-0.21109					42	20	3	0	0	0	0.024484	1	4266	4266		30.318	12.953	1	1462500			45776	7076	31720	31771	51180	51180					0.09700844325402613
LPHPGSEQME	10	Unmodified	_LPHPGSEQME_					0	0	0		ENST00000322054.9_1_2:31489890-31490169:+|nuORF	ENST00000322054.9_1_2:31489890-31490169:+|nuORF	ENST00000322054.9_1_2:31489890-31490169:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.3145141601562	2	562.755681	1123.49681	-0.95045	-0.00053487	-1.7066	-0.00096038	-2.657	-0.0014953	563.255820340927	21.659	0.28786	21.731	21.591	21.879	0.071487					7	5	2	0	0	0	0.03519	1	643	643		47.657	0	1	12689			45777	12215	31721	31772	51181	51181					-0.05999985539096997
LPHRLFRKLKP	11	Unmodified	_LPHRLFRKLKP_					0	0	0			REV__ENSG00000198576|ENST00000356613|ARC	REV__ENSG00000198576|ENST00000356613|ARC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2768859863281	3	468.969863	1403.88776	0.44584	0.00020908	2.1631	0.0010144	2.6089	0.0012235	468.97083829144765	49.526	0.80543	49.526	49.072	49.878	0					38	21	2	0	0	0	0.024828	1	5165	5165		18.531	8.4272	1	202850	+		45778	28434	31722	31773	51182	51182					0.20196983292726145
LPHRLWRHFRL	11	Unmodified	_LPHRLWRHFRL_					0	0	0		ENST00000545022.5_1_12:121970787-121972525:-|nuORF	ENST00000545022.5_1_12:121970787-121972525:-|nuORF	ENST00000545022.5_1_12:121970787-121972525:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7640380859375	3	510.968745	1529.8844	-0.36582	-0.00018692	3.675	0.0018778	3.3092	0.0016909	511.30477426279276	25.75	0.36406	25.579	25.371	25.735	-0.17078					16	8	3	0	0	0	0.024869	1	1253	1253		14.694	0.60766	1	147030			45779	16488	31723	31774	51183	51183					0.14065733238726352
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		TBC1D22A-GCAT|2|fusion;TBC1D22A-GCAT|1|fusion;ENSG00000054611|ENST00000337137|TBC1D22A;TBC1D22A|p.S167C|1|0.17|ENSG00000054611|chr22:46797483-46797483|C/G|missense_variant;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A	TBC1D22A-GCAT|2|fusion	TBC1D22A-GCAT|2|fusion	MSMS	OPSCC_39_ClassI_Rep-1	1	469.76824951171875	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.221	1	48.221	47.721	48.721	0								0	0	0	0.077235	1	4901	4901		97.473	8.8298	1				45780	38059	31724	31775	51184	51184					0.052020714145328384
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		TBC1D22A-GCAT|2|fusion;TBC1D22A-GCAT|1|fusion;ENSG00000054611|ENST00000337137|TBC1D22A;TBC1D22A|p.S167C|1|0.17|ENSG00000054611|chr22:46797483-46797483|C/G|missense_variant;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A	TBC1D22A-GCAT|2|fusion	TBC1D22A-GCAT|2|fusion	MSMS	OPSCC_39_ClassI_Rep-1	1	469.7688293457031	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.277	1	48.277	47.777	48.777	0								0	0	0	0.13191	1	4911	4911		85.359	8.5128	1				45781	38059	31724	31775	51185	51185					0.052020714145328384
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		TBC1D22A-GCAT|2|fusion;TBC1D22A-GCAT|1|fusion;ENSG00000054611|ENST00000337137|TBC1D22A;TBC1D22A|p.S167C|1|0.17|ENSG00000054611|chr22:46797483-46797483|C/G|missense_variant;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A	TBC1D22A-GCAT|2|fusion	TBC1D22A-GCAT|2|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	469.7689514160156	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.379	1	48.226	47.726	48.726	-0.15301								0	0	0	0.077235	1	4905	4905		97.473	0	1				45782	38059	31724	31775	51186	51186					0.052020714145328384
LPHVSSPKI	9	Unmodified	_LPHVSSPKI_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.2768249511719	2	489.292559	976.570566	-0.39859	-0.00019503	0.37989	0.00018588	-0.018703	-9.1513E-06	489.29261645966926	76.471	0.45837	76.203	76.008	76.467	-0.26806					15	10	2	0	0	0	0.024323	1	9094	9094		44.117	0	1	68402			45783	6622	31725	31776	51187	51187					0.0813435068552053
LPHVVSSRK	9	Unmodified	_LPHVVSSRK_					0	0	0			REV__ENST00000515325.5_1_4:56465315-56502750:-|nuORF	REV__ENST00000515325.5_1_4:56465315-56502750:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.8083190917969	2	511.808908	1021.60326	-0.27729	-0.00014192	-0.23644	-0.00012101	-0.51374	-0.00026294	511.80868268499574	22.177	0.90224	21.975	21.566	22.468	-0.20199					38	18	3	0	0	0	0.78069	1	727	727		40.573	1.3198	1	538720	+		45784	34193	31726	31777	51188	51188					0.09332557808386355
LPHYVSGL	8	Unmodified	_LPHYVSGL_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.24267578125	2	443.245078	884.475603	-1.0212	-0.00045263	-3.7478	-0.0016612	-4.769	-0.0021138	443.2434356810486	38.266	1.6567	38.266	37.803	39.459	0					88	46	3	0	0	0	0.48546	3	3180	3180;3205;3217		86.935	2.5912	1	23284000			45785	5019	31727	31778	51189;51190;51191	51189					0.02874417214343339
LPHYVSGL	8	Unmodified	_LPHYVSGL_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2424011230469	2	443.245078	884.475603	-0.6829	-0.00030269	-4.1621	-0.0018448	-4.845	-0.0021475	443.2432481723972	38.172	1.4344	38.089	37.636	39.071	-0.082516					105	39	4	0	0	0	0.61897	2	3142	3142;3153		74.517	6.0319	1	21001000			45786	5019	31727	31778	51192;51193	51192					0.02874417214343339
LPHYVSGL	8	Unmodified	_LPHYVSGL_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2428894042969	2	443.245078	884.475603	-1.5616	-0.00069217	-3.2024	-0.0014195	-4.764	-0.0021116	443.2436552231153	38.354	1.6453	38.381	37.884	39.529	0.027275					110	45	4	0	0	0	0.61897	1	3186	3186		74.517	0.54187	1	22628000			45787	5019	31727	31778	51194	51194					0.02874417214343339
LPIAYDKF	8	Unmodified	_LPIAYDKF_					0	0	0			REV__ENST00000408931.3_1_7:35242061-35242097:-|nuORF	REV__ENST00000408931.3_1_7:35242061-35242097:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.28778076171875	2	483.768386	965.522219	-0.3371	-0.00016308	-4.1167	-0.0019915	-4.4538	-0.0021546	483.7659811255866	22.886	0.50371	22.886	22.619	23.123	0					18	10	2	0	0	0	0.027866	1	867	867		37.159	3.6435	1	134840	+		45788	31941	31728	31779	51195	51195					0.03807857045603669
LPIEPPVFV	9	Unmodified	_LPIEPPVFV_					0	0	0		ENSG00000168032|ENST00000301825|ENTPD3	ENSG00000168032|ENST00000301825|ENTPD3	ENSG00000168032|ENST00000301825|ENTPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8251037597656	2	505.799686	1009.58482	-0.48229	-0.00024394	-2.8976	-0.0014656	-3.3799	-0.0017095	505.79784678633445	80.024	0.58698	80.046	79.729	80.316	0.021446					20	13	2	0	0	0	0.023528	1	9846	9846		60.294	14.342	1	103150			45789	7774	31729	31780	51196	51196					0.080410031138058
LPIFVPVSH	9	Unmodified	_LPIFVPVSH_					0	0	0			REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7719421386719	2	504.797478	1007.5804	-0.50361	-0.00025422	2.3629	0.0011928	1.8593	0.00093856	504.7987033030602	49.022	0.39443	48.87	48.54	48.935	-0.15276					18	10	2	0	0	0	0.024436	1	5003	5003		23.042	2.5607	1	271700	+		45790	23818	31730	31781	51197	51197					0.07691538690903599
LPIGESEDPD	10	Unmodified	_LPIGESEDPD_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2471313476562	2	536.245669	1070.47678	-0.78009	-0.00041832	2.8071	0.0015053	2.0271	0.001087	536.2470433581592	70.21	2.4621	70.222	69.831	72.293	0.012421					97	64	2	0	0	0	1.0665	1	8442	8442		37.159	5.2042	1	4146200	+		45791	19339	31731	31782	51198	51198					-0.05563457998073318
LPIGVRHWL	9	Unmodified	_LPIGVRHWL_					0	0	0		ENST00000301244.11_1_19:38755109-38755307:+|nuORF	ENST00000301244.11_1_19:38755109-38755307:+|nuORF	ENST00000301244.11_1_19:38755109-38755307:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.81640625	2	545.829643	1089.64473	-0.042799	-2.3361E-05	4.3103	0.0023527	4.2675	0.0023293	545.8322069428596	67.146	0.12526	66.897	66.792	66.918	-0.24839					4	2	2	0	0	0	0.024517	1	7712	7712		26.796	2.5934	1	180350			45792	11923	31732	31783	51199	51199					0.10349738567697386
LPILVVDS	8	Unmodified	_LPILVVDS_					0	0	0		ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2622375488281	2	428.262936	854.51132	0.60688	0.0002599	-3.4974	-0.0014978	-2.8905	-0.0012379	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.0572	1	11140	11140		28.254	0	1	63872000			45793	6113	31733	31784	51200	51200					0.07824454671322201
LPIMVNIL	8	Unmodified	_LPIMVNIL_					0	0	0		ENSG00000169126|ENST00000305242|ODAD2;nc|ENSG00000169126|Q5T2S8-2|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7975158691406	2	456.782982	911.55141	-0.99974	-0.00045667	-1.3468	-0.00061519	-2.3465	-0.0010719	456.78197939169024	28.485	0.20076	28.24	28.162	28.363	-0.24524					6	4	2	0	0	0	0.027866	1	1660	1660		77.944	23.179	1	24692			45794	7905	31734	31785	51201	51201					0.09209678070249083
LPINHTYDN	9	Unmodified	_LPINHTYDN_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8023681640625	2	543.764363	1085.51417	-1.0643	-0.00057875	1.3551	0.00073687	0.29079	0.00015812	543.7648767335198	57.281	0.71979	57.377	56.783	57.503	0.09531					39	19	3	0	0	0	0.024283	1	6266	6266		56.434	4.1346	1	320480	+		45795	20367	31735	31786	51202	51202					-0.025163219418118388
LPINHTYDN	9	Unmodified	_LPINHTYDN_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.764363	1085.51417	-0.2087	-0.00011348	0.45936	0.00024979	0.25067	0.0001363	543.7644659717968	57.994	0.79792	57.804	57.148	57.946	-0.19018	0.22111	-0.00044582	NaN	56.434	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	744760	+		45796	20367	31735	31786							-0.025163219418118388
LPINHTYDN	9	Unmodified	_LPINHTYDN_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.764363	1085.51417	-0.97019	-0.00052756	0.86972	0.00047292	-0.10048	-5.4636E-05	543.765035685914	57.957	0.69015	57.723	57.164	57.854	-0.23363	0.14065	4.4657E-07	NaN	56.434	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474770	+		45797	20367	31735	31786							-0.025163219418118388
LPIPIYGNSPL	11	Unmodified	_LPIPIYGNSPL_					0	0	0		ENSG00000244476|ENST00000472091|ERVFRD-1	ENSG00000244476|ENST00000472091|ERVFRD-1	ENSG00000244476|ENST00000472091|ERVFRD-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.3057861328125	2	592.339707	1182.66486	-0.40313	-0.00023879	0.18259	0.00010815	-0.22055	-0.00013064	592.3396125151359	63.225	0.53269	62.967	62.706	63.239	-0.25824					33	12	4	0	0	0	0.024732	1	7157	7157		25.574	4.6271	1	587850			45798	10822	31736	31787	51203	51203					0.08083444716999111
LPIQEMKY	8	Unmodified	_LPIQEMKY_					0	0	0			REV__nc|ENSG00000106526|Q9C0K3-2|ACTR3C	REV__nc|ENSG00000106526|Q9C0K3-2|ACTR3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.25341796875	2	511.272978	1020.5314	-0.41156	-0.00021042	1.6819	0.00085993	1.2704	0.00064952	511.27345297494975	57.06	0.7739	56.893	56.443	57.216	-0.1672					37	20	3	0	0	0	0.027866	1	6222	6222		38.806	1.647	1	189550	+		45799	21623	31737	31788	51204	51204					0.021958823396403204
LPIRPLKMS	9	Unmodified	_LPIRPLKMS_					0	0	0			REV__nc|ENSG00000244486|Q96GP6|SCARF2	REV__nc|ENSG00000244486|Q96GP6|SCARF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2867431640625	2	527.825712	1053.63687	-1.8184	-0.00095981	2.0566	0.0010855	0.2382	0.00012573	527.8280472036134	30.553	0.29085	30.553	30.426	30.717	0					8	6	2	0	0	0	0.024541	1	1962	1962		10.866	0	1	29052	+		45800	29000	31738	31789	51205	51205					0.11219843255912565
LPISNGGPII	10	Unmodified	_LPISNGGPII_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.79290771484375	2	490.792392	979.570232	0.11909	5.8448E-05	1.0168	0.00049903	1.1359	0.00055748	490.7925488383622	61.547	0.82783	61.547	61.216	62.044	0					46	21	4	0	0	0	0.31896	1	7127	7127		107.01	0.5923	1	2219300	+		45801	21403	31739	31790	51206	51206					0.07962930965663872
LPISRGPP	8	Unmodified	_LPISRGPP_					0	0	0			REV__chr3:189808526-189864229|396|14.93|0.28|5.72|+|1|TP63,None|1	REV__chr3:189808526-189864229|396|14.93|0.28|5.72|+|1|TP63,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.900390625	2	418.75307	835.491587	2.4371	0.0010205	-2.6303	-0.0011014	-0.19323	-8.0916E-05	418.75203909256	19.038	0.34547	18.805	18.632	18.978	-0.23345					11	6	3	0	0	0	0.027866	1	330	330		13.775	6.085	1	16463	+		45802	19436	31740	31791	51207	51207					0.06726123451232979
LPISVILE	8	Unmodified	_LPISVILE_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.7348937988281	2	442.278586	882.54262	2.1283	0.0009413	-4.1514	-0.0018361	-2.0231	-0.00089478	442.27577481526345	23.612	0.49302	23.421	23.167	23.66	-0.19117					15	11	2	0	0	0	0.027866	1	949	949		30.504	6.3009	1	44266	+		45803	23857	31741	31792	51208	51208					0.09665027705420925
LPIVELENL	9	Unmodified	_LPIVELENL_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3052978515625	2	520.305332	1038.59611	-0.36642	-0.00019065	-0.12605	-6.5587E-05	-0.49248	-0.00025624	520.305250529144	93.624	1.9066	93.624	92.495	94.402	0					92	45	4	0	0	0	0.2508	3	11884	11874;11884;11895		82.241	14.747	1	6754900	+		45804	36915	31742	31793	51209;51210;51211	51210					0.07835780417281057
LPIVELENL	9	Unmodified	_LPIVELENL_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3051147460938	2	520.305332	1038.59611	-0.57988	-0.00030171	0.15207	7.9124E-05	-0.4278	-0.00022259	520.3053790993109	93.564	1.5776	93.56	92.647	94.224	-0.0042038					98	37	5	0	0	0	0.2508	4	11845	11845;11854;11866;11879		82.241	13.648	1	6559600	+		45805	36915	31742	31793	51212;51213;51214;51215	51212					0.07835780417281057
LPIVELENL	9	Unmodified	_LPIVELENL_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3049926757812	2	520.305332	1038.59611	-0.69967	-0.00036404	0.29519	0.00015359	-0.40448	-0.00021045	520.3054938297144	93.614	1.9055	93.62	92.501	94.406	0.0059814					101	45	5	0	0	0	0.2508	2	11824	11801;11824		82.241	8.7615	1	6622100	+		45806	36915	31742	31793	51216;51217	51217					0.07835780417281057
LPIVELENL	9	Unmodified	_LPIVELENL_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.30517578125	2	520.305332	1038.59611	-1.4143	-0.00073589	1.2395	0.00064493	-0.17482	-9.0957E-05	520.3058922379086	93.52	1.2196	93.38	92.829	94.049	-0.13995					70	27	4	0	0	0	0.32811	2	11493	11493;11504		71.877	11.51	1	1694100	+		45807	36915	31742	31793	51218;51219	51218					0.07835780417281057
LPIVELENL	9	Unmodified	_LPIVELENL_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.30517578125	2	520.305332	1038.59611	0.41563	0.00021626	-0.84892	-0.0004417	-0.43328	-0.00022544	520.304800388179	93.554	0.91519	93.432	92.971	93.886	-0.12215					61	20	4	0	0	0	0.32811	1	11531	11531		71.877	11.584	1	1813800	+		45808	36915	31742	31793	51220	51220					0.07835780417281057
LPIVELENL	9	Unmodified	_LPIVELENL_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	520.305332	1038.59611	-1.4143	-0.00073589	1.2395	0.00064493	-0.17482	-9.0957E-05	520.3058922379086	93.52	1.2196	93.38	92.829	94.049	-0.13995	-0.13251	0.0013046	NaN	82.241	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1694100	+		45809	36915	31742	31793							0.07835780417281057
LPIVELENL	9	Unmodified	_LPIVELENL_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	520.305332	1038.59611	0.09195	4.7842E-05	-0.52222	-0.00027171	-0.43027	-0.00022387	520.3049806038833	93.605	1.1323	93.461	92.958	94.09	-0.1441	-0.051954	-0.00052869	NaN	82.241	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1772100	+		45810	36915	31742	31793							0.07835780417281057
LPIVVLGVDI	10	Unmodified	_LPIVVLGVDI_					0	0	0			REV__ENSG00000164893|ENST00000297524|SLC7A13	REV__ENSG00000164893|ENST00000297524|SLC7A13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2899169921875	2	519.333893	1036.65323	0.62908	0.0003267	-3.3186	-0.0017235	-2.6895	-0.0013968	519.3320478486717	50.847	0.7952	50.666	50.426	51.222	-0.18071					48	20	3	0	0	0	0.03519	1	5268	5268		44.117	16.235	1	1303800	+		45811	25814	31743	31794	51221	51221					0.13637247693668542
LPKAAVRAR	9	Unmodified	_LPKAAVRAR_					0	0	0		ENST00000423701.6_1_3:42610528-42623396:-|nuORF	ENST00000423701.6_1_3:42610528-42623396:-|nuORF	ENST00000423701.6_1_3:42610528-42623396:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.30267333984375	2	491.319443	980.624333	0.37397	0.00018374	-0.0015454	-7.5929E-07	0.37242	0.00018298	491.31973231907915	87.47	0.32569	87.47	87.364	87.69	0					9	7	2	0	0	0	0.024541	1	11033	11033		17.365	5.8539	1	59112			45812	14028	31744	31795	51222	51222					0.1332456790788683
LPKANLLFKGF	11	Unmodified	_LPKANLLFKGF_					0	0	0		TOMM40|p.S317F|1|0.14|ENSG00000130204|chr19:44903033-44903033|C/T|missense_variant	TOMM40|p.S317F|1|0.14|ENSG00000130204|chr19:44903033-44903033|C/T|missense_variant	TOMM40|p.S317F|1|0.14|ENSG00000130204|chr19:44903033-44903033|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	625.3680419921875	2	624.379166	1246.74378	0.76106	0.00047519	2.5808	0.0016114	3.3419	0.0020866	624.3809216201895	100.09	0.53304	99.953	99.637	100.17	-0.13364					22	16	2	0	0	0	0.024765	1	12433	12433		64.207	36.325	1	486980			45813	38098	31745	31796	51223	51223					0.13027716741930817
LPKANLLFKGF	11	Unmodified	_LPKANLLFKGF_					0	0	0		TOMM40|p.S317F|1|0.14|ENSG00000130204|chr19:44903033-44903033|C/T|missense_variant	TOMM40|p.S317F|1|0.14|ENSG00000130204|chr19:44903033-44903033|C/T|missense_variant	TOMM40|p.S317F|1|0.14|ENSG00000130204|chr19:44903033-44903033|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	625.3674926757812	2	624.379166	1246.74378	-0.22661	-0.00014149	3.3763	0.0021081	3.1497	0.0019666	624.8824442385327	100.12	0.25887	99.994	99.894	100.15	-0.12504					13	9	2	0	0	0	0.024765	1	12429	12429		54.776	31.734	1	586040			45814	38098	31745	31796	51224	51224					0.13027716741930817
LPKAQTPQS	9	Unmodified	_LPKAQTPQS_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7480773925781	2	485.271824	968.529095	-0.00056544	-2.7439E-07	4.0628	0.0019716	4.0623	0.0019713	485.2734128450345	69.962	0.69907	69.711	69.483	70.182	-0.25063					25	16	2	0	0	0	0.022832	1	8166	8166		62.107	5.3864	1	361490	+		45815	28659	31746	31797	51225	51225					0.04357169926197457
LPKASRPP	8	Unmodified	_LPKASRPP_					0	0	0			REV__nc|ENSG00000141441|Q9H706-3|GAREM1	REV__nc|ENSG00000141441|Q9H706-3|GAREM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.2664489746094	2	433.266345	864.518136	2.3803	0.0010313	-3.507	-0.0015195	-1.1267	-0.00048817	433.26449317764343	24.636	1.368	24.455	24.072	25.44	-0.18089					56	31	3	0	0	0	0.6536	1	1056	1056		71.296	3.9685	1	2663900	+		45816	24087	31747	31798	51226	51226					0.08045812342561476
LPKAVIKV	8	Unmodified	_LPKAVIKV_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.28680419921875	2	434.304939	866.595324	0.091362	3.9679E-05	-4.2332	-0.0018385	-4.1418	-0.0017988	434.3033158326478	52.217	0.34214	52.217	52.049	52.391	0					11	8	2	0	0	0	0.027866	1	5575	5575		26.796	5.0938	1	112780	+		45817	34101	31748	31799	51227	51227					0.15669030558899522
LPKDKNIL	8	Unmodified	_LPKDKNIL_					0	0	0		nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4;ENST00000455611.6_1_4:146049153-146095893:-|nuORF;ENST00000237841.5_1_12:3949907-3950609:+|nuORF	nc|ENSG00000164164|Q01804-5|OTUD4	nc|ENSG00000164164|Q01804-5|OTUD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.7955627441406	2	470.794935	939.575317	-0.78049	-0.00036745	-0.012291	-5.7864E-06	-0.79278	-0.00037324	470.7948979440245	42.829	1.0896	42.603	42.22	43.31	-0.22597					83	28	5	0	0	0	0.38451	1	3867	3867		99.375	0	1	5810100			45818	7229	31749	31800	51228	51228					0.10311234828293436
LPKEHAASL	9	Unmodified	_LPKEHAASL_					0	0	0		ENSG00000140365|ENST00000267935|COMMD4;nc|ENSG00000140365|Q9H0A8-2|COMMD4	ENSG00000140365|ENST00000267935|COMMD4	ENSG00000140365|ENST00000267935|COMMD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.27484130859375	2	483.274367	964.53418	0.11731	5.6694E-05	-0.41495	-0.00020053	-0.29764	-0.00014384	483.27392866503413	30.558	0.54688	30.409	30.18	30.727	-0.14952					32	12	4	0	0	0	0.14181	1	1945	1945		101.25	32.466	1	1107200			45819	5403	31750	31801	51229	51229					0.05049473788801606
LPKEHAASL	9	Unmodified	_LPKEHAASL_					0	0	0		ENSG00000140365|ENST00000267935|COMMD4;nc|ENSG00000140365|Q9H0A8-2|COMMD4	ENSG00000140365|ENST00000267935|COMMD4	ENSG00000140365|ENST00000267935|COMMD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	483.274367	964.53418	-0.17645	-8.5275E-05	-0.13756	-6.6479E-05	-0.31401	-0.00015175	483.2741104786048	30.583	0.58594	30.339	30.122	30.708	-0.24415	0.015116	-0.00036585	NaN	101.25	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022600			45820	5403	31750	31801							0.05049473788801606
LPKEHAASL	9	Unmodified	_LPKEHAASL_					0	0	0		ENSG00000140365|ENST00000267935|COMMD4;nc|ENSG00000140365|Q9H0A8-2|COMMD4	ENSG00000140365|ENST00000267935|COMMD4	ENSG00000140365|ENST00000267935|COMMD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.274367	964.53418	-0.71851	-0.00034724	0.38707	0.00018706	-0.33144	-0.00016018	483.2742924579005	30.495	0.54264	30.317	30.083	30.625	-0.17818	-0.0068324	0.00014122	NaN	101.25	29	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006300			45821	5403	31750	31801							0.05049473788801606
LPKEWVLL	8	Unmodified	_LPKEWVLL_					0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3009033203125	2	499.307678	996.600803	-0.63654	-0.00031783	3.9508	0.0019727	3.3143	0.0016548	499.3087081793475	32.758	0.44296	32.764	32.445	32.888	0.0066261					16	11	2	0	0	0	0.027866	1	2258	2258		45.952	1.8352	1	124310	+		45822	24343	31751	31802	51230	51230					0.10236709350692763
LPKGKHSV	8	Unmodified	_LPKGKHSV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000468608.1_1_1:226549491-226550854:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.2669372558594	2	433.266345	864.518136	1.1316	0.0004903	-0.29499	-0.00012781	0.83665	0.00036249	433.26605967831284	18.134	0.6405	17.978	17.755	18.396	-0.15637					29	12	4	0	0	0	0.6248	2	275	263;275		73.975	19.08	1	660460			45823	5688	31752	31803	51231;51232	51232					0.08045812342561476
LPKGKHSV	8	Unmodified	_LPKGKHSV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000468608.1_1_1:226549491-226550854:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.2666320800781	2	433.266345	864.518136	0.18432	7.9859E-05	0.28148	0.00012196	0.4658	0.00020182	433.266322247631	18.143	0.49543	17.937	17.764	18.259	-0.20669					19	9	3	0	0	0	0.50239	2	269	256;269		85.359	25.066	1	622740			45824	5688	31752	31803	51233;51234	51234					0.08045812342561476
LPKGLLAPE	9	Unmodified	_LPKGLLAPE_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.75018310546875	2	469.289485	936.564418	0.021972	1.0311E-05	0.051354	2.41E-05	0.073326	3.4411E-05	469.2893565324005	53.048	1.7722	53.048	52.513	54.285	0					80	48	2	0	0	0	0.024381	1	5887	5887		37.159	0	1	149580			45825	185	31753	31804	51235	51235					0.09359832453992567
LPKKAPAKMR	10	Unmodified	_LPKKAPAKMR_					0	0	0			REV__ENSG00000183230|ENST00000433211|CTNNA3	REV__ENSG00000183230|ENST00000433211|CTNNA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.3148803710938	2	570.357711	1138.70087	-0.0047748	-2.7233E-06	3.2592	0.0018589	3.2544	0.0018562	570.3596756182781	95.495	1.0874	95.358	94.723	95.81	-0.13689					46	24	3	0	0	0	0.03519	1	11807	11807		26.693	0	1	179810	+		45826	27553	31754	31805	51236	51236					0.13706623412849694
LPKKEFVP	8	Unmodified	_LPKKEFVP_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2590026855469	2	479.292028	956.569503	-0.84456	-0.00040479	2.6452	0.0012678	1.8007	0.00086305	479.2931584471958	55.531	0.4379	55.629	55.561	55.999	0.098015					14	11	2	0	0	0	0.027866	1	6062	6062		76.847	36.274	1	386570	+		45827	25194	31755	31806	51237	51237					0.08948136316610089
LPKKEKKS	8	Unmodified	_LPKKEKKS_					0	0	0			REV__DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	REV__DHX37|p.V618Gfs*45|1|0.15|ENSG00000150990|chr12:124964576-124964586|ATTGGTGGCCA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.28424072265625	2	479.30821	956.601866	0.33275	0.00015949	-4.2338	-0.0020293	-3.9011	-0.0018698	479.3059964119824	75.624	0.23352	75.449	75.351	75.584	-0.17548					6	5	2	0	0	0	0.027866	1	8948	8948		17.365	0	1	34530	+		45828	19673	31756	31807	51238	51238					0.12182923719603878
LPKKKLGF	8	Unmodified	_LPKKKLGF_					0	0	0			REV__TMEM107|p.F140L|1|0.13|ENSG00000179029|chr17:8174206-8174206|G/C|missense_variant	REV__TMEM107|p.F140L|1|0.13|ENSG00000179029|chr17:8174206-8174206|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7811279296875	2	465.810388	929.606223	-1.4775	-0.00068823	0.7387	0.00034409	-0.73879	-0.00034413	465.810916869464	29.428	0.15105	29.428	29.296	29.447	0					5	3	2	0	0	0	0.027866	1	1805	1805		9.4706	0.64823	1	72933	+		45829	37704	31757	31808	51239	51239					0.1386043293317698
LPKKLARAP	9	Unmodified	_LPKKLARAP_					0	0	0		ENST00000561743.5_2_16:58033574-58036432:+|nuORF	ENST00000561743.5_2_16:58033574-58036432:+|nuORF	ENST00000561743.5_2_16:58033574-58036432:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	497.3270568847656	2	497.332019	992.649485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.56	1	105.56	105.06	106.06	0								0	0	0	0.60629	1	13553	13553		38.806	18.324	1				45830	16834	31758	31809	51240	51240					0.15286622710448228
LPKKLARAP	9	Unmodified	_LPKKLARAP_					0	0	0		ENST00000561743.5_2_16:58033574-58036432:+|nuORF	ENST00000561743.5_2_16:58033574-58036432:+|nuORF	ENST00000561743.5_2_16:58033574-58036432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2953186035156	2	497.332019	992.649485	0.38169	0.00018983	-0.729	-0.00036255	-0.34731	-0.00017273	497.331171602099	41.156	0.21609	41.033	40.87	41.086	-0.12317					8	5	2	0	0	0	0.024535	1	3667	3667		12.207	0	1	65111			45831	16834	31758	31809	51241	51241					0.15286622710448228
LPKKSQVL	8	Unmodified	_LPKKSQVL_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7974853515625	2	456.797478	911.580402	-0.88522	-0.00040436	0.65588	0.0002996	-0.22934	-0.00010476	456.79772240899496	28.4	1.1198	28.155	27.718	28.838	-0.24524					69	26	5	0	0	0	0.50717	1	1672	1672		84.916	2.6105	1	5730900			45832	9361	31759	31810	51242	51242					0.12107538690884212
LPKKSQVL	8	Unmodified	_LPKKSQVL_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.7976379394531	2	456.797478	911.580402	-0.70829	-0.00032355	1.3074	0.00059722	0.5991	0.00027367	456.7976913092468	28.286	1.0361	28.117	27.649	28.685	-0.16897					67	24	5	0	0	0	0.32162	3	1623	1611;1623;1635		108.09	17.311	1	4522300			45833	9361	31759	31810	51243;51244;51245	51244					0.12107538690884212
LPKKSQVL	8	Unmodified	_LPKKSQVL_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.7978820800781	2	456.797478	911.580402	-0.42623	-0.0001947	0.091981	4.2017E-05	-0.33424	-0.00015268	456.79751433474087	28.414	1.4025	28.263	27.808	29.211	-0.15195					54	33	2	0	0	0	0.4075	4	1612	1612;1623;1635;1650		96.19	8.3033	1	6154500			45834	9361	31759	31810	51246;51247;51248;51249	51246					0.12107538690884212
LPKLAVFDLG	10	Unmodified	_LPKLAVFDLG_					0	0	0		ENST00000530222.5_1_14:24685071-24685203:-|nuORF	ENST00000530222.5_1_14:24685071-24685203:-|nuORF	ENST00000530222.5_1_14:24685071-24685203:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7554321289062	2	536.823692	1071.63283	-1.2872	-0.00069101	-1.2659	-0.00067956	-2.5531	-0.0013706	536.8227028612167	38.562	0.44003	38.383	38.136	38.576	-0.17929					18	11	2	0	0	0	0.03519	1	3172	3172		49.442	22.749	1	131420			45835	16226	31760	31811	51250	51250					0.09988077033835907
LPKLAVFDLG	10	Unmodified	_LPKLAVFDLG_					0	0	0		ENST00000530222.5_1_14:24685071-24685203:-|nuORF	ENST00000530222.5_1_14:24685071-24685203:-|nuORF	ENST00000530222.5_1_14:24685071-24685203:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7551879882812	2	536.823692	1071.63283	-1.1068	-0.00059417	-2.3611	-0.0012675	-3.4679	-0.0018617	536.822468235952	38.458	0.54902	38.237	37.99	38.539	-0.22149					21	14	2	0	0	0	0.03519	1	3171	3171		76.774	56.777	1	137200			45836	16226	31760	31811	51251	51251					0.09988077033835907
LPKLAVFDLG	10	Unmodified	_LPKLAVFDLG_					0	0	0		ENST00000530222.5_1_14:24685071-24685203:-|nuORF	ENST00000530222.5_1_14:24685071-24685203:-|nuORF	ENST00000530222.5_1_14:24685071-24685203:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7552490234375	2	536.823692	1071.63283	-0.89775	-0.00048193	-2.9437	-0.0015802	-3.8414	-0.0020622	536.8220455442384	38.525	0.72501	38.307	38.019	38.744	-0.21848					26	19	2	0	0	0	0.03519	1	3171	3171		49.442	15.926	1	172260			45837	16226	31760	31811	51252	51252					0.09988077033835907
LPKLCCHGR	9	Unmodified	_LPKLCCHGR_					0	0	0			REV__ENST00000376874.8_1_12:123956975-123957059:-|nuORF	REV__ENST00000376874.8_1_12:123956975-123957059:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7738647460938	2	513.770414	1025.52628	-0.48118	-0.00024722	4.1764	0.0021457	3.6953	0.0018985	513.7720106468635	45.365	0.90666	45.266	44.977	45.884	-0.099445					69	25	5	0	0	0	0.024381	1	4346	4346		45.952	10.334	1	2061700	+		45838	31369	31761	31812	51253	51253					0.014532999960238158
LPKLEGPKL	9	Unmodified	_LPKLEGPKL_					0	0	0			REV__ENSG00000136158|ENST00000377104|SPRY2	REV__ENSG00000136158|ENST00000377104|SPRY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2740478515625	2	497.81841	993.622267	-0.33301	-0.00016578	-0.89366	-0.00044488	-1.2267	-0.00061066	497.8176505255998	40.139	0.37837	40.027	39.83	40.208	-0.11222					16	9	2	0	0	0	0.023454	1	3490	3490		71.877	0	1	96366	+		45839	23632	31762	31813	51254	51254					0.12520094379431157
LPKLKELNL	9	Unmodified	_LPKLKELNL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2426147460938	2	534.344792	1066.67503	-0.73405	-0.00039223	0.56734	0.00030316	-0.1667	-8.9076E-05	534.3449545877651	56.191	1.0316	56.035	55.499	56.53	-0.15656					61	26	4	0	0	0	0.024389	1	6084	6084		51.193	0	1	1590400			45840	2196	31763	31814	51255	51255					0.1443605244221544
LPKLKELNL	9	Unmodified	_LPKLKELNL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2432861328125	2	534.344792	1066.67503	-0.26908	-0.00014378	0.044782	2.3929E-05	-0.2243	-0.00011985	534.344675363948	56.266	0.90494	56.05	55.485	56.39	-0.21607					47	23	3	0	0	0	0.024257	1	6094	6094		33.922	12.236	1	1474800			45841	2196	31763	31814	51256	51256					0.1443605244221544
LPKLLGQLVS	10	Unmodified	_LPKLLGQLVS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.24365234375	2	534.344792	1066.67503	-0.9864	-0.00052708	0.83255	0.00044487	-0.15385	-8.2211E-05	534.3451222138478	56.333	0.86691	56.113	55.523	56.39	-0.22012					55	22	4	0	0	0	0.03519	1	6081	6081		56.434	0	1	1258100	+		45842	27387	31764	31815	51257	51257					0.1443605244221544
LPKLPRSGV	9	Unmodified	_LPKLPRSGV_					0	0	0			REV__ENSG00000123836|ENST00000367080|PFKFB2	REV__ENSG00000123836|ENST00000367080|PFKFB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.23736572265625	2	483.808377	965.6022	-0.41969	-0.00020305	-4.4225	-0.0021396	-4.8421	-0.0023427	483.8076288795524	40.515	0.43181	40.366	40.078	40.51	-0.1497					13	11	2	0	0	0	0.024487	1	3532	3532		24.203	10.427	1	212270	+		45843	22716	31765	31816	51258	51258					0.11802343439467222
LPKMPEMAV	9	Unmodified	_LPKMPEMAV_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8367614746094	2	508.269381	1014.52421	-0.32615	-0.00016577	-1.3578	-0.00069015	-1.684	-0.00085592	508.2686071301759	17.447	0.44942	17.24	17.065	17.514	-0.20669					12	8	2	0	0	0	0.024457	1	195	195		45.952	15.634	1	62358			45844	2648	31766	31817	51259	51259					0.01752826467554769
LPKPAAGR	8	Unmodified	_LPKPAAGR_					0	0	0			REV__ENST00000353704.2_2_9:35732491-35732602:+|nuORF	REV__ENST00000353704.2_2_9:35732491-35732602:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.23529052734375	2	405.253237	808.491922	-0.10267	-4.1608E-05	-3.1034	-0.0012577	-3.2061	-0.0012993	405.253409808897	23.537	0.83052	23.476	23.069	23.899	-0.06086					35	19	4	0	0	0	0.027866	1	957	957		19.36	9.8894	1	137220	+		45845	30745	31767	31818	51260	51260					0.08001543171087633
LPKPAAGR	8	Unmodified	_LPKPAAGR_					0	0	0			REV__ENST00000353704.2_2_9:35732491-35732602:+|nuORF	REV__ENST00000353704.2_2_9:35732491-35732602:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	405.253237	808.491922	0.70924	0.00028742	-4.5332	-0.0018371	-3.8239	-0.0015497	405.2530207892172	23.534	0.83239	23.534	23.033	23.866	0	0.031364	0.00012035	NaN	24.203	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122720	+		45846	30745	31767	31818							0.08001543171087633
LPKPAAGR	8	Unmodified	_LPKPAAGR_					0	0	0			REV__ENST00000353704.2_2_9:35732491-35732602:+|nuORF	REV__ENST00000353704.2_2_9:35732491-35732602:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	405.253237	808.491922	1.4632	0.00059295	-6.5373	-0.0026493	-5.0742	-0.0020563	405.2527237375401	23.422	1.0678	23.499	22.933	24.001	0.076239	-0.0042572	-0.001504	NaN	24.203	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88418	+		45847	30745	31767	31818							0.08001543171087633
LPKPKAKT	8	Unmodified	_LPKPKAKT_					0	0	0		ENST00000492877.1_1_1:28211787-28212430:+|nuORF;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2	ENST00000492877.1_1_1:28211787-28212430:+|nuORF	ENST00000492877.1_1_1:28211787-28212430:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.2172546386719	2	441.792195	881.569838	-0.75704	-0.00033445	1.3525	0.00059753	0.59549	0.00026308	441.7925065080595	38.093	0.50187	37.914	37.701	38.203	-0.17929					22	14	2	0	0	0	0.027866	1	3080	3080		12.207	3.9756	1	206940			45848	4457	31768	31819	51261	51261					0.12431556036449365
LPKPKAKT	8	Unmodified	_LPKPKAKT_					0	0	0		ENST00000492877.1_1_1:28211787-28212430:+|nuORF;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2	ENST00000492877.1_1_1:28211787-28212430:+|nuORF	ENST00000492877.1_1_1:28211787-28212430:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.792195	881.569838	-0.89776	-0.00039662	1.3009	0.00057475	0.40319	0.00017812	441.79257444657435	38.188	0.60818	37.967	37.686	38.294	-0.22148	0.015258	0.00014906	NaN	12.207	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271950			45849	4457	31768	31819							0.12431556036449365
LPKPKAKT	8	Unmodified	_LPKPKAKT_					0	0	0		ENST00000492877.1_1_1:28211787-28212430:+|nuORF;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2	ENST00000492877.1_1_1:28211787-28212430:+|nuORF	ENST00000492877.1_1_1:28211787-28212430:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	441.792195	881.569838	-0.33134	-0.00014638	0.7342	0.00032436	0.40286	0.00017798	441.7922055669322	38.193	0.49765	37.974	37.755	38.253	-0.21848	0.022358	-0.00035171	NaN	12.207	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174140			45850	4457	31768	31819							0.12431556036449365
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.8134765625	2	488.813128	975.611703	0.15653	7.6513E-05	-0.53273	-0.00026041	-0.3762	-0.00018389	488.8127287135169	58.041	1.7277	58.041	57.68	59.408	0					97	46	5	0	0	0	0.040175	2	6533	6533;6544		133.47	51.164	1	22638000			45851	867	31769	31820	51262;51263	51262					0.1229211172496889
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.8123474121094	2	488.813128	975.611703	-0.76004	-0.00037152	0.35156	0.00017185	-0.40848	-0.00019967	488.81315559059834	58.388	1.778	58.201	57.812	59.59	-0.18705					96	48	4	0	0	0	0.074956	2	6541	6541;6551		119.56	37.252	1	17612000			45852	867	31769	31820	51264;51265	51264					0.1229211172496889
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.81280517578125	2	488.813128	975.611703	-0.66381	-0.00032448	0.24709	0.00012078	-0.41671	-0.00020369	488.81313180968283	57.986	1.6367	58.078	57.683	59.32	0.091217					92	44	4	0	0	0	0.040175	2	6438	6438;6447		133.47	39.463	1	19366000			45853	867	31769	31820	51266;51267	51266					0.1229211172496889
LPKQPVIVK	9	Unmodified	_LPKQPVIVK_					0	0	0		ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2637023925781	2	511.342052	1020.66955	0.14638	7.4848E-05	-1.3876	-0.00070956	-1.2413	-0.00063471	511.3412709444305	81.064	0.48917	80.858	80.587	81.077	-0.20632					26	11	3	0	0	0	0.024487	1	9742	9742		17.365	0	1	168240			45854	7561	31770	31821	51268	51268					0.1600437365042353
LPKRMSGAPT	10	Unmodified	_LPKRMSGAPT_					0	0	0		ENST00000594348.1_1_19:8429070-8436049:+|nuORF	ENST00000594348.1_1_19:8429070-8436049:+|nuORF	ENST00000594348.1_1_19:8429070-8436049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8064575195312	2	529.294776	1056.575	-0.072876	-3.8573E-05	0.57096	0.0003022	0.49808	0.00026363	529.2949602143221	50.038	0.56682	50.119	49.81	50.377	0.080994					33	16	3	0	0	0	0.03519	1	5093	5093		40.778	3.6191	1	437260			45855	17406	31771	31822	51269	51269					0.0489749183677759
LPKRRRRKR	9	Unmodified	_LPKRRRRKR_					0	0	0		ENSG00000163516|ENST00000323348|ANKZF1;ENST00000463792.5_1_2:220099420-220100035:+|nuORF;ENST00000477479.5_1_2:220099420-220101164:+|nuORF	ENSG00000163516|ENST00000323348|ANKZF1	ENSG00000163516|ENST00000323348|ANKZF1	MSMS	OPSCC_39_ClassI_Rep-2	2	633.4244384765625	2	633.428713	1264.84287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.67	1	107.66	107.16	108.16	-0.0056458								0	0	0	0.73432	1	13770	13770		12.959	1.4482	1				45856	7093	31772	31823	51270	51270					0.22104597270049453
LPKRVIVQRIL	11	Unmodified	_LPKRVIVQRIL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.6363220214844	3	445.638001	1333.89217	-0.22348	-9.959E-05	-4.1616	-0.0018546	-4.3851	-0.0019542	445.6360074128349	40.438	2.0072	40.213	39.658	41.665	-0.225					176	52	4	0	0	0	1.0921	2	3504	3504;3517		13.508	4.7086	1	5821200			45857	4971	31773	31824	51271;51272	51271					0.2385844771565644
LPKRVIVQRIL	11	Unmodified	_LPKRVIVQRIL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.63616943359375	3	445.638001	1333.89217	-0.97497	-0.00043448	-3.3561	-0.0014956	-4.3311	-0.0019301	445.6363691293585	40.465	1.7994	40.235	39.851	41.651	-0.23021					187	47	5	0	0	0	1.0921	1	3535	3535		13.508	1.0751	1	4700100			45858	4971	31773	31824	51273	51273					0.2385844771565644
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B;ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.803955078125	2	560.8055	1119.59645	-0.27173	-0.00015239	-0.037182	-2.0852E-05	-0.30891	-0.00017324	560.8054166929137	57.498	1.6613	57.498	56.643	58.304	0					113	45	5	0	0	0	0.055122	6	6490	6441;6452;6464;6476;6490;6502		146.79	56.502	1	10494000			45859	1256	31774	31825	51274;51275;51276;51277;51278;51279	51278					0.04143200137127678
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B;ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.8056640625	2	560.8055	1119.59645	-0.068307	-3.8307E-05	-0.20835	-0.00011684	-0.27666	-0.00015515	560.8053116840726	57.703	1.9916	57.528	56.596	58.587	-0.1749					120	54	5	0	0	0	0.03397	8	6465	6431;6442;6452;6465;6476;6489;6503;6513		152.06	52.104	1	8612700			45860	1256	31774	31825	51280;51281;51282;51283;51284;51285;51286;51287	51283					0.04143200137127678
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B;ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.8045043945312	2	560.8055	1119.59645	-0.56884	-0.00031901	0.40022	0.00022445	-0.16862	-9.4562E-05	560.8056360479715	57.335	1.4044	57.43	56.684	58.088	0.095306					104	38	5	0	0	0	0.10407	6	6389	6341;6353;6365;6376;6389;6401		134.77	46.589	1	9895600			45861	1256	31774	31825	51288;51289;51290;51291;51292;51293	51292					0.04143200137127678
LPKSRASKR	9	Unmodified	_LPKSRASKR_					0	0	0		ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2823486328125	2	521.827632	1041.64071	0.33415	0.00017437	-1.9122	-0.00099783	-1.578	-0.00082346	522.3282822500568	22.443	0.23315	22.241	22.097	22.33	-0.20198					7	4	2	0	0	0	0.024506	1	754	754		23.042	0	1	23520			45862	4233	31775	31826	51294	51294					0.12155649073974928
LPKSSTQSL	9	Unmodified	_LPKSSTQSL_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF	ENSG00000161996|ENST00000293879|WDR90;nc|ENSG00000161996|Q96KV7-3|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.26983642578125	2	480.771657	959.528761	-0.16429	-7.8987E-05	-2.7668	-0.0013302	-2.9311	-0.0014092	480.7707988595616	33.458	1.0689	33.458	32.903	33.972	0					73	28	4	0	0	0	0.6238	1	2397	2397		51.193	3.5354	1	4794600			45863	6908;13966	31776	31827	51295	51295					0.04737750206345481
LPKSSTQSL	9	Unmodified	_LPKSSTQSL_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF	ENSG00000161996|ENST00000293879|WDR90;nc|ENSG00000161996|Q96KV7-3|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7674255371094	2	480.771657	959.528761	-0.53997	-0.0002596	-2.8871	-0.001388	-3.4271	-0.0016476	480.77098856202963	33.297	1.1837	33.304	32.776	33.959	0.0066223					82	31	4	0	0	0	0.18994	1	2386	2386		90.601	13.827	1	5782800			45864	6908;13966	31776	31827	51296	51296					0.04737750206345481
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.2789001464844	2	458.279118	914.543683	0.23192	0.00010628	-0.16957	-7.771E-05	0.062349	2.8573E-05	458.2788938898805	47.114	0.86352	47.114	46.696	47.56	0					58	23	4	0	0	0	0.077175	3	4690	4690;4701;4713		118.74	19.368	1	4787700			45865	7968	31777	31828	51297;51298;51299	51297					0.08299242074338053
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.2790222167969	2	458.279118	914.543683	0.59453	0.00027246	-0.27185	-0.00012458	0.32268	0.00014788	458.27894164982126	47.259	1.2768	47.106	46.55	47.827	-0.15301					68	35	4	0	0	0	0.043667	2	4707	4695;4707		131.03	31.656	1	4023400			45866	7968	31777	31828	51300;51301	51301					0.08299242074338053
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2787170410156	2	458.279118	914.543683	-0.223	-0.0001022	0.30502	0.00013978	0.082014	3.7585E-05	458.2791440621162	47.044	0.8615	47.103	46.693	47.554	0.059097					58	23	4	0	0	0	0.077175	3	4631	4622;4631;4644		118.74	13.997	1	4111400			45867	7968	31777	31828	51302;51303;51304	51303					0.08299242074338053
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.279118	914.543683	-0.0038764	-1.7765E-06	0.13678	6.2681E-05	0.1329	6.0905E-05	458.2791216510452	47.124	0.66381	47.027	46.754	47.418	-0.096649	-0.051862	0.00022296	NaN	131.03	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601680			45868	7968	31777	31828							0.08299242074338053
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	458.279118	914.543683	0.14523	6.6555E-05	-0.35668	-0.00016346	-0.21145	-9.6905E-05	458.2789214128495	47.371	0.66288	47.102	46.764	47.427	-0.26939	0.022711	-0.00022932	NaN	131.03	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480210			45869	7968	31777	31828							0.08299242074338053
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.279118	914.543683	-0.098831	-4.5292E-05	-0.16583	-7.5997E-05	-0.26466	-0.00012129	458.2789699291795	47.217	0.73856	47.024	46.644	47.382	-0.19387	-0.055779	-5.4398E-05	NaN	131.03	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415800			45870	7968	31777	31828							0.08299242074338053
LPKTTALEL	9	Unmodified	_LPKTTALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.301025390625	2	493.30005	984.585547	-0.49428	-0.00024383	-0.44731	-0.00022066	-0.94159	-0.00046449	493.2998636631055	56.427	0.73314	56.525	56.283	57.016	0.097893					41	20	3	0	0	0	0.15366	1	6198	6198		98.629	2.4389	1	4622100			45871	6721	31778	31829	51305	51305					0.09263797762832837
LPKTVNPSH	9	Unmodified	_LPKTVNPSH_					0	0	0		ENST00000473253.5_1_3:174581768-175298945:+|nuORF;ENSG00000177694|ENST00000454872|NAALADL2	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.82122802734375	2	496.779816	991.545079	0.075449	3.7482E-05	-0.93725	-0.00046561	-0.8618	-0.00042812	496.7792076721409	42.885	1.4365	42.885	42.222	43.658	0					72	39	3	0	0	0	0.024466	1	3881	3881		24.519	0	1	2027000			45872	8765	31779	31830	51306	51306					0.04896876163093111
LPKVRLIRA	9	Unmodified	_LPKVRLIRA_					0	0	0		ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7855224609375	2	533.366393	1064.71823	-0.57409	-0.0003062	0.08321	4.4381E-05	-0.49088	-0.00026182	533.3655857132584	45.654	0.24223	45.698	45.58	45.822	0.043877					10	6	3	0	0	0	0.024541	1	4414	4414		18.324	6.1176	1	526320			45873	3742	31780	31831	51307	51307					0.18846287010160268
LPKVSTLTK	9	Unmodified	_LPKVSTLTK_					0	0	0			REV__ENST00000316623.9_1_15:48797308-48800796:-|nuORF	REV__ENST00000316623.9_1_15:48797308-48800796:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7814636230469	2	493.815867	985.617182	-0.39231	-0.00019373	-0.59605	-0.00029434	-0.98835	-0.00048806	493.8157783606303	66.294	0.26848	66.048	65.972	66.24	-0.24517					9	6	2	0	0	0	0.024541	1	7602	7602		9.1829	0	1	61864	+		45874	30283	31781	31832	51308	51308					0.12379790516797584
LPKYVQQVQ	9	Unmodified	_LPKYVQQVQ_					0	0	0		ENSG00000213619|ENST00000263774|NDUFS3;nc|ENSG00000213619|O75489-2|NDUFS3;ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENSG00000213619|ENST00000263774|NDUFS3	ENSG00000213619|ENST00000263774|NDUFS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.288818359375	2	551.816399	1101.61824	-1.095	-0.00060423	3.6243	0.002	2.5293	0.0013957	551.8182198751857	47.538	0.74884	47.597	47.214	47.963	0.059093					37	22	3	0	0	0	0.024412	1	4784	4784		40.573	1.7665	1	1051900			45875	10513	31782	31833	51309	51309					0.07150004885693306
LPKYVQQVQ	9	Unmodified	_LPKYVQQVQ_					0	0	0		ENSG00000213619|ENST00000263774|NDUFS3;nc|ENSG00000213619|O75489-2|NDUFS3;ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENSG00000213619|ENST00000263774|NDUFS3	ENSG00000213619|ENST00000263774|NDUFS3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.816399	1101.61824	-0.51664	-0.00028509	2.7519	0.0015185	2.2353	0.0012335	551.8176350571907	47.622	0.48201	47.622	47.361	47.843	0	0.071779	-0.00039819	NaN	65.803	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497960			45876	10513	31782	31833							0.07150004885693306
LPKYVQQVQ	9	Unmodified	_LPKYVQQVQ_					0	0	0		ENSG00000213619|ENST00000263774|NDUFS3;nc|ENSG00000213619|O75489-2|NDUFS3;ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENSG00000213619|ENST00000263774|NDUFS3	ENSG00000213619|ENST00000263774|NDUFS3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.816399	1101.61824	-0.67078	-0.00037015	3.2876	0.0018141	2.6168	0.001444	551.8179963051349	47.811	0.5151	47.658	47.441	47.957	-0.15301	0.10773	0.00019296	NaN	65.803	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660880			45877	10513	31782	31833							0.07150004885693306
LPKYVQQVQ	9	Unmodified	_LPKYVQQVQ_					0	0	0		ENSG00000213619|ENST00000263774|NDUFS3;nc|ENSG00000213619|O75489-2|NDUFS3;ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENSG00000213619|ENST00000263774|NDUFS3	ENSG00000213619|ENST00000263774|NDUFS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	551.816399	1101.61824	-0.21714	-0.00011982	2.559	0.0014121	2.3418	0.0012922	551.8175905295585	47.764	0.35944	47.488	47.305	47.664	-0.27598	-0.061581	-0.00061114	NaN	65.803	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127510			45878	10513	31782	31833							0.07150004885693306
LPKYVQQVQ	9	Unmodified	_LPKYVQQVQ_					0	0	0		ENSG00000213619|ENST00000263774|NDUFS3;nc|ENSG00000213619|O75489-2|NDUFS3;ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENSG00000213619|ENST00000263774|NDUFS3	ENSG00000213619|ENST00000263774|NDUFS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	551.816399	1101.61824	-0.038508	-2.1249E-05	2.1689	0.0011968	2.1304	0.0011756	551.8176806086215	47.572	0.36846	47.385	47.123	47.491	-0.18684	-0.16525	-0.0010416	NaN	65.803	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156910			45879	10513	31782	31833							0.07150004885693306
LPLACPLKLD	10	Unmodified	_LPLACPLKLD_					0	0	0		ENST00000379731.4_1_9:33111977-33112064:-|nuORF	ENST00000379731.4_1_9:33111977-33112064:-|nuORF	ENST00000379731.4_1_9:33111977-33112064:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8314819335938	2	541.817553	1081.62055	-0.41117	-0.00022278	-1.521	-0.00082409	-1.9321	-0.0010469	542.3186699998741	75.963	0.38142	75.975	75.863	76.244	0.011642					13	9	2	0	0	0	0.03519	1	9273	9273		32.812	16.339	1	62239			45880	13283	31783	31834	51310	51310					0.08300717299152893
LPLAGELGP	9	Unmodified	_LPLAGELGP_					0	0	0		ENST00000459925.1_1_16:67702005-67702500:+|nuORF;ENSG00000159761|ENST00000403458|C16orf86	ENST00000459925.1_1_16:67702005-67702500:+|nuORF	ENST00000459925.1_1_16:67702005-67702500:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.75146484375	2	433.752736	865.490919	-0.11927	-5.1733E-05	-2.6732	-0.0011595	-2.7925	-0.0012112	433.7514853429107	20.01	1.9787	19.905	19.066	21.045	-0.10477					82	40	3	0	0	0	0.85941	1	424	424		35.201	1.6851	1	1132100			45881	6767	31784	31835	51311	51311					0.05279284011521668
LPLAPPPLQC	10	Unmodified	_LPLAPPPLQC_					0	0	0			REV__ENST00000524669.5_1_11:57416538-57416754:-|nuORF	REV__ENST00000524669.5_1_11:57416538-57416754:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3135375976562	2	524.79662	1047.57869	-0.24847	-0.0001304	1.4657	0.00076918	1.2172	0.00063878	524.7974664461631	73.337	0.18825	73.347	73.29	73.479	0.0096512					6	4	2	0	0	0	0.03519	1	8877	8877		25.45	1.2474	1	56360	+		45882	34391	31785	31836	51312	51312					0.05680161610621326
LPLCFGLLSL	10	Unmodified	_LPLCFGLLSL_					0	0	0			REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	REV__nc|ENSG00000167703|Q8N370-4|SLC43A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2737426757812	2	538.314646	1074.61474	-1.1137	-0.0005995	4.2018	0.0022619	3.0881	0.0016624	538.316906749506	62.545	0.3267	62.608	62.401	62.728	0.062763					13	7	2	0	0	0	0.03519	1	7178	7178		23.042	0	1	284090	+		45883	26183	31786	31837	51313	51313					0.08041618787501648
LPLCGNHR	8	Unmodified	_LPLCGNHR_					0	0	0		ENSG00000177476|ENST00000320002|OR2G3	ENSG00000177476|ENST00000320002|OR2G3	ENSG00000177476|ENST00000320002|OR2G3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.2496643066406	2	455.239804	908.465055	-0.20844	-9.4891E-05	-1.0885	-0.00049554	-1.297	-0.00059043	455.2391809994506	17.746	0.39935	17.54	17.364	17.764	-0.20669					19	7	4	0	0	0	0.027866	1	221	221		15.636	8.4429	1	158460			45884	8743	31787	31838	51314	51314					0.007161112882499765
LPLCLPLP	8	Unmodified	_LPLCLPLP_					0	0	0		ENST00000564785.5_1_15:75652318-75652519:-|nuORF	ENST00000564785.5_1_15:75652318-75652519:-|nuORF	ENST00000564785.5_1_15:75652318-75652519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.26629638671875	2	433.264425	864.514297	-0.13002	-5.6332E-05	3.4911	0.0015126	3.3611	0.0014562	433.2655979194355	24.787	1.0706	24.572	24.089	25.159	-0.2151					58	24	4	0	0	0	0.8525	1	1110	1110		54.895	0	1	3502900			45885	16905	31788	31839	51315	51315					0.07662006524481058
LPLCLPLP	8	Unmodified	_LPLCLPLP_					0	0	0		ENST00000564785.5_1_15:75652318-75652519:-|nuORF	ENST00000564785.5_1_15:75652318-75652519:-|nuORF	ENST00000564785.5_1_15:75652318-75652519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.2664794921875	2	433.264425	864.514297	0.0052749	2.2854E-06	3.4498	0.0014947	3.4551	0.001497	433.26558978027333	24.537	1.204	24.362	23.873	25.077	-0.17484					55	27	3	0	0	0	0.8525	1	1067	1067		54.895	11.269	1	3510900			45886	16905	31788	31839	51316	51316					0.07662006524481058
LPLCLPLP	8	Unmodified	_LPLCLPLP_					0	0	0		ENST00000564785.5_1_15:75652318-75652519:-|nuORF	ENST00000564785.5_1_15:75652318-75652519:-|nuORF	ENST00000564785.5_1_15:75652318-75652519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.26617431640625	2	433.264425	864.514297	2.3803	0.0010313	0.92422	0.00040043	3.3046	0.0014317	433.26449317764343	24.636	1.368	24.455	24.072	25.44	-0.18089					56	31	3	0	0	0	0.69959	1	1077	1077		67.327	1.524	1	2663900			45887	16905	31788	31839	51317	51317					0.07662006524481058
LPLCRKPV	8	Unmodified	_LPLCRKPV_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT;ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.75128173828125	2	463.286223	924.557893	0.074255	3.4401E-05	-2.9397	-0.0013619	-2.8655	-0.0013275	463.2848021803838	50.134	0.50628	49.983	49.781	50.287	-0.1512					29	14	3	0	0	0	0.027866	1	5199	5199		54.765	12.29	1	264920			45888	9647	31789	31840	51318	51318					0.09259616021620332
LPLCRRLL	8	Unmodified	_LPLCRRLL_					0	0	0		ENST00000372086.3_1_1:45923487-45956596:-|nuORF	ENST00000372086.3_1_1:45923487-45956596:-|nuORF	ENST00000372086.3_1_1:45923487-45956596:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2698669433594	2	492.312772	982.610991	-0.21168	-0.00010421	3.5455	0.0017455	3.3338	0.0016413	492.31433943097227	25.571	0.42417	25.399	25.241	25.666	-0.17151					14	9	2	0	0	0	0.027866	1	1201	1201		29.842	0	1	71322			45889	13025	31790	31841	51319	51319					0.11898993804288693
LPLDWIKSL	9	Unmodified	_LPLDWIKSL_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7759399414062	2	542.823692	1083.63283	-0.4417	-0.00023977	-3.7421	-0.0020313	-4.1838	-0.0022711	542.821705821676	68.131	0.50403	67.843	67.632	68.136	-0.28834					23	12	2	0	0	0	0.023635	1	8125	8125		76.774	25.439	1	733460	+		45890	28078	31791	31842	51320	51320					0.09436077033842594
LPLEKVYSL	9	Unmodified	_LPLEKVYSL_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22;ENST00000487090.1_1_22:20812284-20819767:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3156127929688	2	531.3157	1060.61685	-1.8461	-0.00098087	0.56652	0.000301	-1.2796	-0.00067986	531.3163290342367	65.303	0.57077	65.101	64.778	65.348	-0.20254					32	13	3	0	0	0	0.15388	1	7466	7466		98.582	21.808	1	1136700			45891	2096	31792	31843	51321	51321					0.0889637079694694
LPLEKVYSL	9	Unmodified	_LPLEKVYSL_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22;ENST00000487090.1_1_22:20812284-20819767:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.3157	1060.61685	-0.55901	-0.00029701	-0.61326	-0.00032583	-1.1723	-0.00062284	531.3156768124618	65.324	0.65097	65.09	64.728	65.379	-0.2345	0.0015222	-0.00044619	NaN	98.582	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1090500			45892	2096	31792	31843							0.0889637079694694
LPLEKVYSL	9	Unmodified	_LPLEKVYSL_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22;ENST00000487090.1_1_22:20812284-20819767:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.3157	1060.61685	-0.62183	-0.00033039	-1.0026	-0.00053271	-1.6244	-0.0008631	531.31575309318	65.325	0.64826	65.074	64.705	65.353	-0.25112	-0.01397	-0.00085994	NaN	98.582	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1316000			45893	2096	31792	31843							0.0889637079694694
LPLERQKV	8	Unmodified	_LPLERQKV_					0	0	0		ENST00000528737.5_1_11:58912617-58912722:+|nuORF	ENST00000528737.5_1_11:58912617-58912722:+|nuORF	ENST00000528737.5_1_11:58912617-58912722:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.2789001464844	2	491.805834	981.597115	-0.037557	-1.8471E-05	-1.4303	-0.00070341	-1.4678	-0.00072188	491.8055611374985	60.091	0.4477	59.843	59.571	60.019	-0.24842					22	11	2	0	0	0	0.027866	1	6627	6627		15.642	0	1	336870			45894	16188	31793	31844	51322	51322					0.10558039576847023
LPLETLVSP	9	Unmodified	_LPLETLVSP_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant;ENST00000470054.5_2_21:11038782-11047532:-|nuORF;ENST00000496773.1_1_21:11038782-11047532:-|nuORF	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2718200683594	2	484.786776	967.558998	1.3957	0.0006766	-3.3991	-0.0016478	-2.0034	-0.00097125	484.7873566559241	63.773	0.42795	63.818	63.511	63.939	0.045502					16	11	3	0	0	0	0.024487	1	7398	7398		31.955	7.7521	1	107200			45895	1189	31794	31845	51323	51323					0.07392108871533765
LPLETWRKF	9	Unmodified	_LPLETWRKF_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.3361206054688	2	595.340041	1188.66553	-1.8938	-0.0011275	-2.6851	-0.0015985	-4.5789	-0.002726	595.3384300970758	109.55	0.40125	109.42	109.29	109.69	-0.13821					47	19	3	0	0	0	0.98128	1	13470	13470		24.203	1.1603	1	1619200	+		45896	31722	31795	31846	51324	51324					0.07874284156696376
LPLETWRKF	9	Unmodified	_LPLETWRKF_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	595.340041	1188.66553	-0.23715	-0.00014119	-2.5647	-0.0015269	-2.8019	-0.0016681	595.339133207253	109.6	0.35064	109.6	109.31	109.66	0	0.11992	0.0011176	NaN	24.203	37	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403270	+		45897	31722	31795	31846							0.07874284156696376
LPLETWRKF	9	Unmodified	_LPLETWRKF_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	595.340041	1188.66553	-0.61186	-0.00036427	-2.6542	-0.0015802	-3.2661	-0.0019444	595.83880108958	109.48	0.22888	109.48	109.42	109.65	-0.0075684	-0.0045644	0.0010111	NaN	24.203	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215260	+		45898	31722	31795	31846							0.07874284156696376
LPLETWRKF	9	Unmodified	_LPLETWRKF_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	595.340041	1188.66553	-0.23245	-0.00013838	-2.5206	-0.0015006	-2.7531	-0.001639	595.3390618635578	109.55	0.056244	109.56	109.52	109.57	0.0059204	0.076834	0.0011701	NaN	24.203	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140950	+		45899	31722	31795	31846							0.07874284156696376
LPLETWRKF	9	Unmodified	_LPLETWRKF_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	595.340041	1188.66553	-1.8938	-0.0011275	-2.6851	-0.0015985	-4.5789	-0.002726	595.3384300970758	109.55	0.40125	109.42	109.29	109.69	-0.13821	-0.065655	0.00097433	NaN	24.203	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1619200	+		45900	31722	31795	31846							0.07874284156696376
LPLETWRKF	9	Unmodified	_LPLETWRKF_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	595.340041	1188.66553	0.20218	0.00012037	-4.3987	-0.0026187	-4.1965	-0.0024983	595.3374032689916	109.58	0.38065	109.43	109.29	109.67	-0.14889	-0.050714	-0.001066	NaN	24.203	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1491100	+		45901	31722	31795	31846							0.07874284156696376
LPLFLMLLF	9	Unmodified	_LPLFLMLLF_					0	0	0			REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.7794799804688	2	553.837757	1105.66096	-0.30252	-0.00016755	2.0867	0.0011557	1.7842	0.00098813	553.8391555331617	62.353	0.62051	62.139	61.662	62.283	-0.21375					31	15	3	0	0	0	0.024475	1	7020	7020		29.842	7.8817	1	455230	+		45902	32935	31796	31847	51325	51325					0.11235683689574216
LPLFLMLLF	9	Unmodified	_LPLFLMLLF_					0	0	0			REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.7796020507812	2	553.837757	1105.66096	-0.4417	-0.00024463	0.62454	0.00034589	0.18284	0.00010126	553.8369752999466	62.478	0.66122	62.219	61.666	62.327	-0.25824					31	16	3	0	0	0	0.024389	1	7020	7020		39.021	13.571	1	478800	+		45903	32935	31796	31847	51326	51326					0.11235683689574216
LPLFLSQF	8	Unmodified	_LPLFLSQF_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.77667236328125	2	482.778754	963.542954	-0.0019381	-9.3566E-07	-3.7537	-0.0018122	-3.7556	-0.0018131	482.7765879924584	97.265	1.4826	97.265	96.792	98.275	0					67	33	4	0	0	0	0.91239	1	12407	12407		50.025	0	1	992680			45904	37967	31797	31848	51327	51327					0.05972447425278915
LPLFPPQR	8	Unmodified	_LPLFPPQR_					0	0	0			REV__ENST00000372398.5_1_9:132995463-132995607:+|nuORF	REV__ENST00000372398.5_1_9:132995463-132995607:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.3084411621094	2	484.28982	966.565087	0.28533	0.00013818	2.9423	0.0014249	3.2276	0.0015631	484.29143774568377	78.518	0.38489	78.362	78.085	78.47	-0.15591					9	8	2	0	0	0	0.027866	1	9338	9338		37.028	11.578	1	34652	+		45905	31203	31798	31849	51328	51328					0.08046671893703206
LPLFRTKY	8	Unmodified	_LPLFRTKY_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2886962890625	2	519.310752	1036.60695	-0.65638	-0.00034086	3.0967	0.0016082	2.4403	0.0012673	519.3122224228255	51.558	0.38762	51.281	51.116	51.504	-0.27643					16	9	2	0	0	0	0.027866	1	5292	5292		29.15	0	1	151480	+		45906	28374	31799	31850	51329	51329					0.09011227582209358
LPLFYTTF	8	Unmodified	_LPLFYTTF_					0	0	0			REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7457275390625	2	501.270761	1000.52697	-0.62546	-0.00031352	1.9242	0.00096457	1.2988	0.00065104	501.2713201104312	41.64	0.23448	41.41	41.274	41.508	-0.23029					7	5	2	0	0	0	0.027866	1	3660	3660		44.531	17.735	1	52697	+		45907	20173	31800	31851	51330	51330					0.026727411883598506
LPLGAPVAL	9	Unmodified	_LPLGAPVAL_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.77471923828125	2	425.773471	849.53239	0.17338	7.3822E-05	2.9368	0.0012504	3.1102	0.0013242	425.77467244094674	42.032	1.0796	41.909	41.603	42.683	-0.12299					99	28	5	0	0	0	0.99355	1	3760	3760		21.702	0	1	37307000	+		45908	20261	31801	31852	51331	51331					0.10160464770854105
LPLGAQLL	8	Unmodified	_LPLGAQLL_					0	0	0			REV__ENSG00000181786|ENST00000324436|ACTL9	REV__ENSG00000181786|ENST00000324436|ACTL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2453308105469	2	412.765646	823.516739	-0.32299	-0.00013332	-0.048336	-1.9951E-05	-0.37133	-0.00015327	412.7658336733609	31.175	0.70576	30.934	30.367	31.073	-0.24109					20	16	2	0	0	0	0.027866	1	2066	2066		65.897	16.687	1	62065	+		45909	27425	31802	31853	51332	51332					0.09792178253815109
LPLGSMPTAL	10	Unmodified	_LPLGSMPTAL_					0	0	0		ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.2828674316406	2	500.280803	998.547053	-1.03	-0.00051529	3.8969	0.0019495	2.8669	0.0014343	500.2826614949427	37.755	0.71274	37.755	37.486	38.199	0					55	20	5	0	0	0	0.75995	1	3110	3110		63.306	0.32785	1	3132100			45910	6265	31803	31854	51333	51333					0.04772168856675307
LPLHHPAR	8	Unmodified	_LPLHHPAR_					0	0	0			REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.79498291015625	2	470.777411	939.540269	-0.18162	-8.5501E-05	-0.84716	-0.00039882	-1.0288	-0.00048432	470.776937487917	42.768	0.98776	42.532	41.967	42.955	-0.23555					62	25	4	0	0	0	0.027866	1	3853	3853		54.765	12.369	1	2610900	+		45911	30684	31804	31855	51334	51334					0.06808036810980411
LPLHVKTTL	9	Unmodified	_LPLHVKTTL_					0	0	0			REV__ENST00000472189.1_1_17:15960700-15961247:-|nuORF	REV__ENST00000472189.1_1_17:15960700-15961247:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2644348144531	2	511.32386	1020.63317	-0.63228	-0.0003233	0.60314	0.0003084	-0.029144	-1.4902E-05	511.32394186693506	81.446	1.2961	81.446	80.899	82.195	0					54	31	2	0	0	0	0.024381	1	10114	10114		45.952	11.779	1	103000	+		45912	33201	31805	31856	51335	51335					0.12367496753699925
LPLILAWDL	9	Unmodified	_LPLILAWDL_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7378540039062	2	527.320786	1052.62702	-0.53366	-0.00028141	-3.1388	-0.0016552	-3.6724	-0.0019366	527.3190521655488	53.446	0.50772	53.319	53.066	53.574	-0.12705					25	13	3	0	0	0	0.024517	1	5564	5564		12.959	0	1	401070	+		45913	23353	31806	31857	51336	51336					0.10280978522177975
LPLKIIAYHDL	11	Unmodified	_LPLKIIAYHDL_					0	0	0			REV__ENST00000498163.1_1_8:23064590-23064794:+|nuORF	REV__ENST00000498163.1_1_8:23064590-23064794:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2430114746094	3	432.595579	1294.76491	0.40428	0.00017489	-2.9114	-0.0012595	-2.5071	-0.0010846	432.5939762518934	47.468	0.83737	47.315	46.736	47.574	-0.15301					52	22	3	0	0	0	0.024748	1	4659	4659		30.569	1.0181	1	473240	+		45914	33876	31807	31858	51337	51337					0.12931682050793825
LPLKKRPAL	9	Unmodified	_LPLKKRPAL_					0	0	0			REV__ENSG00000223443|ENST00000333796|USP17L2	REV__ENSG00000223443|ENST00000333796|USP17L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.355494	1034.69644	-0.18923	-9.8086E-05	-4.1202	-0.0021357	-4.3094	-0.0022338	518.8544161352287	102.72	0.32542	102.71	102.5	102.83	-0.0046005					16	7	3	0	0	0	0.024541	1	13060	13060		19.36	6.4008	1	128050	+		45915	28847	31808	31859	51338	51338					0.1804748226159063
LPLKRHFG	8	Unmodified	_LPLKRHFG_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17;ENST00000504177.5_1_5:68666979-68710116:+|nuORF	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.26947021484375	2	484.295436	966.57632	-0.46712	-0.00022623	-4.1643	-0.0020167	-4.6314	-0.002243	484.2933547281832	27.349	0.77999	27.349	27.144	27.924	0					46	20	3	0	0	0	0.027866	1	1467	1467		9.4706	0	1	706420			45916	6309	31809	31860	51339	51339					0.09169493987849364
LPLLCPPL	8	Unmodified	_LPLLCPPL_					0	0	0			REV__ENSG00000101255|ENST00000217233|TRIB3	REV__ENSG00000101255|ENST00000217233|TRIB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.2663269042969	2	433.264425	864.514297	-0.13002	-5.6332E-05	3.4911	0.0015126	3.3611	0.0014562	433.2655979194355	24.787	1.0706	24.572	24.089	25.159	-0.2151					58	24	4	0	0	0	0.69959	1	1121	1121		67.327	0	1	3502900	+		45917	21209	31810	31861	51340	51340					0.07662006524481058
LPLLCPPL	8	Unmodified	_LPLLCPPL_					0	0	0			REV__ENSG00000101255|ENST00000217233|TRIB3	REV__ENSG00000101255|ENST00000217233|TRIB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.2663269042969	2	433.264425	864.514297	0.0052749	2.2854E-06	3.4498	0.0014947	3.4551	0.001497	433.26558978027333	24.537	1.204	24.362	23.873	25.077	-0.17484					55	27	3	0	0	0	0.69959	1	1077	1077		67.327	0	1	3510900	+		45918	21209	31810	31861	51341	51341					0.07662006524481058
LPLLCPPL	8	Unmodified	_LPLLCPPL_					0	0	0			REV__ENSG00000101255|ENST00000217233|TRIB3	REV__ENSG00000101255|ENST00000217233|TRIB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.2663269042969	2	433.264425	864.514297	2.3803	0.0010313	0.92422	0.00040043	3.3046	0.0014317	433.26449317764343	24.636	1.368	24.455	24.072	25.44	-0.18089					56	31	3	0	0	0	0.8525	1	1065	1065		54.895	0	1	2663900	+		45919	21209	31810	31861	51342	51342					0.07662006524481058
LPLLDMHTV	9	Unmodified	_LPLLDMHTV_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;ENST00000480863.1_1_2:109111769-109112171:+|nuORF	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2660522460938	2	519.786253	1037.55795	-0.60173	-0.00031277	-1.7184	-0.00089319	-2.3201	-0.001206	520.2871152394364	51.357	0.21619	51.208	51.118	51.335	-0.14916					6	5	2	0	0	0	0.024535	1	5429	5429		33.516	16.151	1	39713			45920	4961	31811	31862	51343	51343					0.040675712309621304
LPLLGLLLSL	10	Unmodified	_LPLLGLLLSL_					0	0	0		ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.2467651367188	2	526.359911	1050.70527	-1.0009	-0.00052682	3.5714	0.0018798	2.5705	0.001353	526.3615253958777	38.295	0.69059	38.115	37.809	38.5	-0.17929					29	19	2	0	0	0	0.03519	1	3128	3128		11.511	0	1	125010			45921	9200	31812	31863	51344	51344					0.18194411107424457
LPLLGQAEPL	10	Unmodified	_LPLLGQAEPL_					0	0	0		ENST00000435723.1_1_7:135661976-135662093:-|nuORF	ENST00000435723.1_1_7:135661976-135662093:-|nuORF	ENST00000435723.1_1_7:135661976-135662093:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.29833984375	2	525.813325	1049.6121	-0.39474	-0.00020756	0.25214	0.00013258	-0.14259	-7.4978E-05	525.8136189171187	55.193	0.62747	55.042	54.782	55.409	-0.15036					31	17	4	0	0	0	0.03519	1	6039	6039		37.812	27.546	1	491240			45922	14267	31813	31864	51345	51345					0.08927486654192762
LPLLKALGF	9	Unmodified	_LPLLKALGF_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3037414550781	2	486.318046	970.621539	-0.21017	-0.00010221	3.3066	0.001608	3.0964	0.0015058	486.31976707637915	47.416	0.26666	47.319	47.083	47.35	-0.096649					9	6	2	0	0	0	0.024517	1	4620	4620		12.959	0	1	72565	+		45923	21546	31814	31865	51346	51346					0.13505299730354636
LPLLLHLF	8	Unmodified	_LPLLLHLF_					0	0	0			REV__ENST00000483222.5_1_22:50686861-50687933:-|nuORF	REV__ENST00000483222.5_1_22:50686861-50687933:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2691955566406	2	483.312764	964.610974	-0.39968	-0.00019317	1.4997	0.00072484	1.1001	0.00053167	483.31343838234886	46.417	0.32768	46.214	46.044	46.372	-0.20226					11	8	2	0	0	0	0.027866	1	4438	4438		10.185	0	1	207340	+		45924	21118	31815	31866	51347	51347					0.12725317075933162
LPLLLTAE	8	Unmodified	_LPLLLTAE_					0	0	0		ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.5471496582031	2	435.270761	868.52697	-0.59322	-0.00025821	-2.7052	-0.0011775	-3.2984	-0.0014357	435.2694533769088	29.601	0.71572	29.429	29.156	29.872	-0.17258					35	16	3	0	0	0	0.027866	1	1818	1818		12.959	0	1	344650			45925	16855	31816	31867	51348	51348					0.08744741188377247
LPLLLTAE	8	Unmodified	_LPLLLTAE_					0	0	0		ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.270761	868.52697	-0.97114	-0.00042271	-2.1985	-0.00095693	-3.1696	-0.0013796	435.26962681578686	29.954	0.44447	29.954	29.692	30.137	0	0.29313	0.00046598	NaN	18.324	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302130			45926	16855	31816	31867							0.08744741188377247
LPLLLTAE	8	Unmodified	_LPLLLTAE_					0	0	0		ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.270761	868.52697	-0.41036	-0.00017862	-2.8259	-0.00123	-3.2362	-0.0014086	435.2693796798737	29.893	0.52671	29.902	29.637	30.164	0.0086708	0.24128	-8.0192E-05	NaN	18.324	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337200			45927	16855	31816	31867							0.08744741188377247
LPLLLTAE	8	Unmodified	_LPLLLTAE_					0	0	0		ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.270761	868.52697	-0.52442	-0.00022826	-2.4576	-0.0010697	-2.9821	-0.001298	435.2695209452677	29.656	0.55649	29.735	29.41	29.966	0.078346	0.073822	0.00024036	NaN	18.324	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334290			45928	16855	31816	31867							0.08744741188377247
LPLLPCAV	8	Unmodified	_LPLLPCAV_					0	0	0		ENST00000497857.5_1_2:218899814-218900102:+|nuORF	ENST00000497857.5_1_2:218899814-218900102:+|nuORF	ENST00000497857.5_1_2:218899814-218900102:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1947937011719	2	413.248775	824.482997	1.9711	0.00081458	3.3481	0.0013836	5.3192	0.0021982	413.24994431723394	23.518	0.49263	23.327	23.124	23.616	-0.19117					19	11	2	0	0	0	0.027866	1	881	881		16.705	0	1	76223			45929	15604	31817	31868	51349	51349					0.06373433490387015
LPLLPGVPM	9	Unmodified	_LPLLPGVPM_					0	0	0		ENST00000584580.1_1_17:45912634-45914483:+|nuORF;ENSG00000141294|ENST00000269025|LRRC46	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.7667541503906	2	468.782982	935.55141	-0.6371	-0.00029866	4.4295	0.0020765	3.7924	0.0017778	468.7848222880084	35.511	0.50438	35.511	35.306	35.81	0					18	12	2	0	0	0	0.024389	1	2719	2719		29.842	1.5873	1	173250			45930	5480	31818	31869	51350	51350					0.08105678070262456
LPLLPLWLG	9	Unmodified	_LPLLPLWLG_					0	0	0		ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.3269958496094	2	511.325871	1020.63719	0.38036	0.00019449	2.1636	0.0011063	2.544	0.0013008	511.32684664670245	96.235	1.1549	96.098	95.725	96.88	-0.13671					63	26	4	0	0	0	0.99355	1	11870	11870		21.702	0	1	1446800			45931	2114	31819	31870	51351	51351					0.12769586247429743
LPLLRGSHLN	10	Unmodified	_LPLLRGSHLN_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-4|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8157348632812	2	560.33529	1118.65603	-0.33471	-0.00018755	4.1155	0.0023061	3.7808	0.0021185	560.3377897287353	80.825	0.20044	80.679	80.532	80.733	-0.146					7	4	2	0	0	0	0.03519	1	9678	9678		37.812	3.639	1	153250			45932	5132	31820	31871	51352	51352					0.10144515871184012
LPLLTKLQMR	10	Unmodified	_LPLLTKLQMR_					0	0	0			REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9229431152344	3	404.921409	1211.7424	0.50475	0.00020438	2.3567	0.0009543	2.8615	0.0011587	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.1237	1	1383	1383		29.551	0.30575	1	35253000	+		45933	37796	31821	31872	51353	51353					0.14499759381510557
LPLPFEKNC	9	Unmodified	_LPLPFEKNC_					0	0	0		ENST00000571644.1_1_16:31374636-31388147:+|nuORF	ENST00000571644.1_1_16:31374636-31388147:+|nuORF	ENST00000571644.1_1_16:31374636-31388147:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2899169921875	2	530.778428	1059.5423	-1.2474	-0.00066207	1.8488	0.0009813	0.60143	0.00031922	530.7812225603802	25.27	0.39403	25.235	25.121	25.515	-0.034395					15	9	2	0	0	0	0.024506	1	1150	1150		16.473	0	1	98843			45934	17042	31822	31873	51354	51354					0.014912847139157748
LPLPHSSSVL	10	Unmodified	_LPLPHSSSVL_					0	0	0			REV__ENSG00000170185|ENST00000307017|USP38	REV__ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3197631835938	2	525.303124	1048.5917	0.019311	1.0144E-05	0.29543	0.00015519	0.31475	0.00016534	525.3030663005812	64.498	0.74768	64.543	64.189	64.937	0.045502					34	19	2	0	0	0	0.03519	1	7509	7509		24.203	0	1	586870	+		45935	26441	31823	31874	51355	51355					0.06934315994362805
LPLPLPLGTE	10	Unmodified	_LPLPLPLGTE_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3195190429688	2	525.3157	1048.61685	-1.3709	-0.00072014	-1.77	-0.00092982	-3.1409	-0.00165	525.3161510501836	64.671	0.80852	64.671	64.384	65.192	0					63	21	5	0	0	0	0.03519	1	7581	7581		24.203	0	1	2236400	+		45936	23961	31824	31875	51356	51356					0.0944837079696299
LPLPLPSPSP	10	Unmodified	_LPLPLPSPSP_					0	0	0		SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|8|2|sense;SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|1|1|sense	SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|8|2|sense	SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|8|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.74493408203125	2	509.302593	1016.59063	-1.1222	-0.00057153	-1.5705	-0.00079988	-2.6927	-0.0013714	509.30190623478	38.999	0.43476	39.023	38.807	39.242	0.023727					19	11	2	0	0	0	0.03519	1	3282	3282		51.335	0	1	346000			45937	30412	31825	31876	51357	51357					0.08300101625468415
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	OPSCC_39_ClassI_Rep-1	1	494.278564453125	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.691	1	88.691	88.191	89.191	0								0	0	0	0.071952	1	11183	11183		99.375	36.069	1				45938	992	31826	31877	51358	51358					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	OPSCC_39_ClassI_Rep-2	2	494.2788391113281	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.639	1	88.612	88.112	89.112	-0.027657								0	0	0	0.052088	1	11142	11142		108.09	17.487	1				45939	992	31826	31877	51359	51359					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	OPSCC_39_ClassI_Rep-3	3	494.27838134765625	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.702	1	88.718	88.218	89.218	0.015907								0	0	0	0.026904	1	11107	11107		120.62	21.246	1				45940	992	31826	31877	51360	51360					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	OPSCC_39_ClassI_Rep-3	3	494.2787780761719	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.794	1	88.81	88.31	89.31	0.015907								0	0	0	0.47068	1	11120	11120		56.721	1.2168	1				45941	992	31826	31877	51361	51361					0.049872420743326984
LPLPPTHNEA	10	Unmodified	_LPLPPTHNEA_					0	0	0		ENST00000538868.2_1_16:87728475-87728820:-|nuORF	ENST00000538868.2_1_16:87728475-87728820:-|nuORF	ENST00000538868.2_1_16:87728475-87728820:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7898559570312	2	544.790381	1087.56621	-0.12336	-6.7207E-05	-0.7217	-0.00039317	-0.84506	-0.00046038	544.7899729249108	49.267	0.76307	49.267	49.005	49.768	0					60	20	6	0	0	0	0.28861	2	5073	5073;5084		110.12	8.5192	1	6077600			45942	16394	31827	31878	51362;51363	51362					0.025928414719373905
LPLPPTHNEA	10	Unmodified	_LPLPPTHNEA_					0	0	0		ENST00000538868.2_1_16:87728475-87728820:-|nuORF	ENST00000538868.2_1_16:87728475-87728820:-|nuORF	ENST00000538868.2_1_16:87728475-87728820:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7899780273438	2	544.790381	1087.56621	-2.1558	-0.0011745	1.5503	0.00084461	-0.60548	-0.00032986	544.791175034852	49.183	0.89036	49.257	48.987	49.877	0.074196					60	23	5	0	0	0	0.21865	1	4988	4988		118.74	0.93201	1	6011800			45943	16394	31827	31878	51364	51364					0.025928414719373905
LPLQIEISDT	10	Unmodified	_LPLQIEISDT_					0	0	0		nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;nc|ENSG00000139364|Q14DG7-3|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.2953491210938	2	564.810979	1127.6074	-0.27876	-0.00015745	0.043757	2.4714E-05	-0.235	-0.00013273	564.8105598520963	103.98	0.46774	103.99	103.64	104.11	0.0031357					18	12	2	0	0	0	0.03519	1	13266	13266		26.693	13.734	1	47636			45944	5330	31828	31879	51365	51365					0.048705577207556416
LPLQLGGL	8	Unmodified	_LPLQLGGL_					0	0	0			REV__ENST00000357022.6_2_2:61404673-61404988:+|nuORF	REV__ENST00000357022.6_2_2:61404673-61404988:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	405.75933837890625	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.72	1	113.59	113.09	114.09	-0.12832								0	0	0	1.3698	1	13754	13754		5.0869	0	1		+		45945	30812	31829	31880	51366	51366					0.08871891736771431
LPLRFPTVP	9	Unmodified	_LPLRFPTVP_					0	0	0		ENST00000462715.1_1_1:36602806-36603094:-|nuORF	ENST00000462715.1_1_1:36602806-36603094:-|nuORF	ENST00000462715.1_1_1:36602806-36603094:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.766845703125	2	520.318577	1038.6226	0.16962	8.8258E-05	1.8322	0.00095332	2.0018	0.0010416	520.8211955903934	47.592	0.43815	47.405	47.123	47.561	-0.18684					21	11	3	0	0	0	0.024457	1	4659	4659		29.15	4.9468	1	131850			45946	14714	31830	31881	51367	51367					0.10483514099269087
LPLRFWINII	10	Unmodified	_LPLRFWINII_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1;ENST00000485535.5_1_3:48445895-48454598:-|nuORF	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.93438720703125	3	428.932414	1283.77541	-0.13929	-5.9748E-05	4.4307	0.0019005	4.2914	0.0018407	428.93435049927234	28.427	0.95379	28.275	28	28.954	-0.15195					69	22	4	0	0	0	0.69662	1	1630	1630		67.494	8.8641	1	3525800			45947	7197	31831	31882	51368	51368					0.14487709495915624
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.7944030761719	2	439.794738	877.574923	-0.10137	-4.4581E-05	0.37685	0.00016574	0.27548	0.00012116	439.794733714523	66.737	0.96332	66.737	66.487	67.45	0					48	23	3	0	0	0	0.61897	2	7945	7945;7957		74.517	17.064	1	1377700	+		45948	30380	31832	31883	51369;51370	51369					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.7950439453125	2	439.794738	877.574923	-0.21575	-9.4885E-05	0.53633	0.00023587	0.32058	0.00014099	439.7948101661232	67.021	0.89538	66.74	66.499	67.395	-0.28149					45	22	3	0	0	0	0.61897	2	7957	7957;7971		74.517	19.752	1	1670400	+		45949	30380	31832	31883	51371;51372	51371					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.7947692871094	2	439.794738	877.574923	-0.026368	-1.1596E-05	0.26368	0.00011596	0.23731	0.00010437	439.79467807716037	66.767	0.95443	66.791	66.517	67.471	0.023911					44	22	3	0	0	0	0.48546	1	7887	7887		86.935	8.9908	1	1347600	+		45950	30380	31832	31883	51373	51373					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	439.794738	877.574923	-0.10137	-4.4581E-05	0.37685	0.00016574	0.27548	0.00012116	439.794733714523	66.737	0.96332	66.737	66.487	67.45	0	-0.018804	-2.9429E-05	NaN	86.935	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1377700	+		45951	30380	31832	31883							0.13123859899098989
LPLRLNAEP	9	Unmodified	_LPLRLNAEP_					0	0	0		ENST00000355221.7_3_8:54628441-54628540:-|nuORF	ENST00000355221.7_3_8:54628441-54628540:-|nuORF	ENST00000355221.7_3_8:54628441-54628540:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.80340576171875	2	511.803291	1021.59203	0.22262	0.00011394	-0.20686	-0.00010587	0.015761	8.0665E-06	511.80302043970573	52.48	1.0271	52.332	51.846	52.873	-0.14723					68	26	4	0	0	0	0.35646	1	5626	5626		68.787	3.3214	1	2433500			45952	12642	31833	31884	51374	51374					0.08209735714217459
LPLRLRLRPL	10	Unmodified	_LPLRLRLRPL_					0	0	0			REV__SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|21|3|sense	REV__SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|21|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2389831542969	3	416.287192	1245.83975	-0.43466	-0.00018095	-3.7923	-0.0015787	-4.227	-0.0017597	416.28572885184457	41.872	0.22026	41.64	41.583	41.803	-0.23186					8	5	2	0	0	0	0.03519	1	3711	3711		4.6126	0	1	78874	+		45953	37655	31834	31885	51375	51375					0.22665909372676651
LPLSCSDISR	10	Unmodified	_LPLSCSDISR_					0	0	0		nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.3269653320312	2	545.781699	1089.54884	-1.5406	-0.00084083	1.9368	0.001057	0.39615	0.00021621	545.7826905463023	64.658	1.0535	64.395	64.083	65.136	-0.2626					69	27	4	0	0	0	0.03519	1	7573	7573		44.377	0	1	2406200			45954	18809	31835	31886	51376	51376					0.007651778746094351
LPLSFHLN	8	Unmodified	_LPLSFHLN_					0	0	0			REV__ENST00000534119.1_1_11:58715222-58723497:+|nuORF	REV__ENST00000534119.1_1_11:58715222-58723497:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7638244628906	2	470.766178	939.517802	-0.4818	-0.00022681	-3.8159	-0.0017964	-4.2977	-0.0020232	470.7642810208321	35.805	0.6688	35.6	35.387	36.056	-0.20518					39	18	3	0	0	0	0.59392	1	2753	2753		76.847	2.8719	1	2877500	+		45955	34628	31836	31887	51377	51377					0.04562392622699463
LPLSFLFF	8	Unmodified	_LPLSFLFF_					0	0	0		ENST00000535572.5_1_12:1018313-1018520:+|nuORF	ENST00000535572.5_1_12:1018313-1018520:+|nuORF	ENST00000535572.5_1_12:1018313-1018520:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.78326416015625	2	492.283672	982.552791	0.074545	3.6697E-05	-2.011	-0.00098996	-1.9364	-0.00095326	492.2829863364526	49.514	1.7253	49.234	48.861	50.586	-0.27977					102	45	4	0	0	0	1.0572	1	4968	4968		28.254	0	1	1256100			45956	16351	31837	31888	51378	51378					0.06081635430655297
LPLSGKLFMLF	11	Unmodified	_LPLSGKLFMLF_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.369384765625	2	633.369952	1264.72535	1.1238	0.00071176	-2.3848	-0.0015104	-1.261	-0.00079869	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0238	1	12361	12361		31.53	3.6476	1	8250400	+		45957	36635	31838	31889	51379	51379					0.1035783877571248
LPLSGKLFMLF	11	Unmodified	_LPLSGKLFMLF_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.370361328125	2	633.369952	1264.72535	-0.5109	-0.00032359	-0.79477	-0.00050339	-1.3057	-0.00082697	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	1.0292	1	12015	12015		30.318	0	1	9245900	+		45958	36635	31838	31889	51380	51380					0.1035783877571248
LPLSGKLFMLF	11	Unmodified	_LPLSGKLFMLF_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.36962890625	2	633.369952	1264.72535	-0.36915	-0.00023381	-0.86849	-0.00055007	-1.2376	-0.00078388	633.3692856842331	93.247	1.3144	93.125	92.182	93.497	-0.12215					76	30	4	0	0	0	1.018	1	11507	11507		32.812	2.4947	1	1726300	+		45959	36635	31838	31889	51381	51381					0.1035783877571248
LPLSGKLFMLF	11	Unmodified	_LPLSGKLFMLF_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3698120117188	2	633.369952	1264.72535	-0.22417	-0.00014198	-1.1746	-0.00074397	-1.3988	-0.00088596	633.3690599981089	93.272	1.3142	93.128	92.169	93.483	-0.1441					76	30	4	0	0	0	1.0292	1	11443	11443		30.318	2.2362	1	1667300	+		45960	36635	31838	31889	51382	51382					0.1035783877571248
LPLSRWWPVL	10	Unmodified	_LPLSRWWPVL_					0	0	0			REV__ENST00000402802.7_1_7:536981-537197:-|nuORF	REV__ENST00000402802.7_1_7:536981-537197:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.9166259765625	3	422.916764	1265.72846	0.87912	0.0003718	-4.2214	-0.0017853	-3.3423	-0.0014135	422.9149001889721	19.314	0.34508	19.314	19.021	19.366	0					11	6	2	0	0	0	0.03519	1	372	372		16.717	6.6135	1	5707.3	+		45961	31877	31839	31890	51383	51383					0.10622849944729751
LPLTKITKV	9	Unmodified	_LPLTKITKV_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.30316162109375	2	506.841885	1011.66922	-0.34269	-0.00017369	-0.26324	-0.00013342	-0.60593	-0.00030711	506.84166953935636	46.87	0.64248	46.717	46.41	47.052	-0.15301					44	16	4	0	0	0	0.023655	1	4666	4666		42.864	5.7052	1	1004500	+		45962	21245	31840	31891	51384	51384					0.1638495393053745
LPLTKITSA	9	Unmodified	_LPLTKITSA_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1;nc|ENSG00000146278|Q12796-2|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.294921875	2	472.294768	942.574983	0.22066	0.00010422	0.13646	6.445E-05	0.35712	0.00016867	472.29461277142053	50.032	0.63946	49.852	49.532	50.172	-0.18071					40	16	3	0	0	0	0.28047	1	5064	5064		78.264	22.76	1	1528700			45963	5872	31841	31892	51385	51385					0.10139815108402672
LPLTPPPQV	9	Unmodified	_LPLTPPPQV_					0	0	0		nc|ENSG00000132677|Q9H310-3|RHBG	nc|ENSG00000132677|Q9H310-3|RHBG	nc|ENSG00000132677|Q9H310-3|RHBG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.24542236328125	2	481.289485	960.564418	0.25145	0.00012102	0.18188	8.7537E-05	0.43333	0.00020856	481.28939978588824	61.147	0.75757	60.941	60.543	61.301	-0.20599					42	18	3	0	0	0	0.024374	1	6815	6815		49.442	29.445	1	855940			45964	18276	31842	31893	51386	51386					0.08255832453983203
LPLTPPPQV	9	Unmodified	_LPLTPPPQV_					0	0	0		nc|ENSG00000132677|Q9H310-3|RHBG	nc|ENSG00000132677|Q9H310-3|RHBG	nc|ENSG00000132677|Q9H310-3|RHBG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2453918457031	2	481.289485	960.564418	-0.46342	-0.00022304	0.47225	0.00022729	0.0088323	4.2509E-06	481.28952290958307	61.24	0.79972	60.986	60.504	61.304	-0.25373					41	19	3	0	0	0	0.024405	1	6816	6816		44.117	13.613	1	813060			45965	18276	31842	31893	51387	51387					0.08255832453983203
LPLTPTMR	8	Unmodified	_LPLTPTMR_					0	0	0			REV__ENST00000297788.8_2_7:128455827-128457854:+|nuORF	REV__ENST00000297788.8_2_7:128455827-128457854:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.75384521484375	2	464.767863	927.521173	-0.82247	-0.00038226	4.4743	0.0020795	3.6519	0.0016973	464.7686375092336	24.025	0.8265	23.978	23.571	24.398	-0.047148					28	18	3	0	0	0	0.027866	1	943	943		40.573	7.057	1	187770	+		45966	30016	31843	31894	51388	51388					0.05451319405051436
LPLVKNLI	8	Unmodified	_LPLVKNLI_					0	0	0		ENST00000553077.5_1_16:68224994-68225093:+|nuORF	ENST00000553077.5_1_16:68224994-68225093:+|nuORF	ENST00000553077.5_1_16:68224994-68225093:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.78228759765625	2	455.310221	908.605889	-0.24811	-0.00011297	0.35615	0.00016216	0.10804	4.9193E-05	455.3102526847775	67.42	0.78773	67.186	66.848	67.636	-0.23376					42	18	3	0	0	0	0.027866	1	7771	7771		71.378	0	1	724500			45967	16631	31844	31895	51389	51389					0.14793013213318318
LPLVLKKLL	9	Unmodified	_LPLVLKKLL_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2421875	2	518.878271	1035.74199	-1.0962	-0.00056879	0.43269	0.00022451	-0.66349	-0.00034427	518.8784402121723	68.847	0.57683	68.585	68.424	69.001	-0.26166					22	13	2	0	0	0	0.024541	1	7998	7998		24.203	0	1	141900			45968	7644	31845	31896	51390	51390					0.22554707723998035
LPLVLKKLL	9	Unmodified	_LPLVLKKLL_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.878271	1035.74199	0.50935	0.00026429	-1.2872	-0.00066792	-0.7779	-0.00040364	518.8774655671918	68.811	0.48286	68.568	68.307	68.79	-0.24277	0.0038329	-0.00054455	NaN	11.511	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120500			45969	7644	31845	31896							0.22554707723998035
LPLVLKKLL	9	Unmodified	_LPLVLKKLL_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.878271	1035.74199	0.31325	0.00016254	-1.3225	-0.00068621	-1.0092	-0.00052367	518.8774448369418	68.769	0.4025	68.539	68.275	68.677	-0.23048	-0.025257	-0.00058113	NaN	11.511	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101040			45970	7644	31845	31896							0.22554707723998035
LPLVLPGDP	9	Unmodified	_LPLVLPGDP_					0	0	0		ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	ENSG00000174326|ENST00000574600|SLC16A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.7742919921875	2	460.776211	919.537869	-0.33057	-0.00015232	-2.7831	-0.0012824	-3.1137	-0.0014347	460.77480760357395	24.057	0.69398	24.057	23.78	24.474	0					41	15	4	0	0	0	0.67308	1	1005	1005		47.916	9.1095	1	1886900			45971	8460	31846	31897	51391	51391					0.07488143562659388
LPLVLTTD	8	Unmodified	_LPLVLTTD_					0	0	0		ENST00000586749.1_1_19:649375-650400:-|nuORF	ENST00000586749.1_1_19:649375-650400:-|nuORF	ENST00000586749.1_1_19:649375-650400:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.26934814453125	2	436.260394	870.506234	-0.65282	-0.0002848	-2.1544	-0.00093986	-2.8072	-0.0012247	436.25942448876555	23.899	0.93377	23.852	23.243	24.177	-0.047146					53	21	4	0	0	0	0.027866	1	927	927		19.36	5.5846	1	364630			45972	17252	31847	31898	51392	51392					0.06580150808690632
LPLVLTTD	8	Unmodified	_LPLVLTTD_					0	0	0		ENST00000586749.1_1_19:649375-650400:-|nuORF	ENST00000586749.1_1_19:649375-650400:-|nuORF	ENST00000586749.1_1_19:649375-650400:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.260394	870.506234	-0.17717	-7.7292E-05	-2.5638	-0.0011185	-2.741	-0.0011958	436.2592380071795	23.896	0.64527	23.896	23.607	24.253	0	0.02944	-2.4972E-05	NaN	19.36	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391520			45973	17252	31847	31898							0.06580150808690632
LPLVVTVE	8	Unmodified	_LPLVVTVE_					0	0	0		ENST00000604204.1_1_6:3023831-3023987:-|nuORF	ENST00000604204.1_1_6:3023831-3023987:-|nuORF	ENST00000604204.1_1_6:3023831-3023987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2691955566406	2	435.270761	868.52697	-0.094046	-4.0935E-05	-3.5712	-0.0015544	-3.6652	-0.0015954	435.2692346075311	23.255	1.6602	23.331	22.702	24.362	0.076241					91	37	4	0	0	0	1.0574	1	884	884		23.037	1.3344	1	11197000			45974	17553	31848	31899	51393	51393					0.08744741188377247
LPLWSISHA	9	Unmodified	_LPLWSISHA_					0	0	0			REV__ENST00000556356.1_1_12:57597999-57598570:+|nuORF	REV__ENST00000556356.1_1_12:57597999-57598570:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.25341796875	2	512.284734	1022.55492	0.26534	0.00013593	-3.6241	-0.0018566	-3.3587	-0.0017206	512.283136868758	54.31	0.29067	54.112	53.955	54.246	-0.19739					10	7	2	0	0	0	0.024183	1	5745	5745		40.573	0	1	319310	+		45975	35033	31849	31900	51394	51394					0.04454064168464811
LPMALGLWP	9	Unmodified	_LPMALGLWP_					0	0	0		ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.8310546875	2	499.280606	996.546659	-0.9208	-0.00045974	3.1473	0.0015714	2.2265	0.0011116	499.28126172367047	44.289	0.28794	44.184	44.099	44.387	-0.10468					11	7	2	0	0	0	0.024389	1	4156	4156		49.211	6.8147	1	69957			45976	17464	31850	31901	51395	51395					0.048247939274801865
LPMATYLN	8	Unmodified	_LPMATYLN_					0	0	0			REV__ENSG00000123908|ENST00000220592|AGO2	REV__ENSG00000123908|ENST00000220592|AGO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7644348144531	2	461.738771	921.462989	0.31844	0.00014704	4.1938	0.0019364	4.5123	0.0020835	461.7405733687276	21.342	0.4305	21.413	21.254	21.684	0.071487					13	8	2	0	0	0	0.027866	1	637	637		29.842	10.482	1	40938	+		45977	22719	31851	31902	51396	51396					-0.0008836224022843453
LPMATYLN	8	Unmodified	_LPMATYLN_					0	0	0			REV__ENSG00000123908|ENST00000220592|AGO2	REV__ENSG00000123908|ENST00000220592|AGO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	461.738771	921.462989	-0.70381	-0.00032498	5.4975	0.0025384	4.7937	0.0022134	461.7410296145189	21.462	0.52953	21.462	21.146	21.676	0	0.027068	0.00064478	NaN	21.702	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70310	+		45978	22719	31851	31902							-0.0008836224022843453
LPMATYLN	8	Unmodified	_LPMATYLN_					0	0	0			REV__ENSG00000123908|ENST00000220592|AGO2	REV__ENSG00000123908|ENST00000220592|AGO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	461.738771	921.462989	-0.31466	-0.00014529	4.8889	0.0022574	4.5743	0.0021121	461.74079723155404	21.52	0.43283	21.43	21.158	21.591	-0.090094	-0.0052025	8.2788E-05	NaN	21.702	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63676	+		45979	22719	31851	31902							-0.0008836224022843453
LPMGPGLPRD	10	Unmodified	_LPMGPGLPRD_					0	0	0		nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8	nc|ENSG00000138892|A6PVC2-2|TTLL8	nc|ENSG00000138892|A6PVC2-2|TTLL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.7743530273438	2	526.781502	1051.54845	-0.32985	-0.00017376	-2.9021	-0.0015288	-3.232	-0.0017025	526.7798780146596	61.869	0.87262	61.656	61.334	62.206	-0.21375					57	21	4	0	0	0	0.85955	1	6944	6944		56.721	0	1	2628400			45980	18327	31852	31903	51397	51397					0.02473802945451098
LPMKLTETI	9	Unmodified	_LPMKLTETI_					0	0	0			REV__ENST00000343958.8_1_12:95502316-95507453:-|nuORF	REV__ENST00000343958.8_1_12:95502316-95507453:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3031616210938	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.53979	2	10985	10985;10997		56.721	7.2795	1	11897000	+		45981	30675	31853	31904	51398;51399	51398					0.06840724545213561
LPMLKVLNL	9	Unmodified	_LPMLKVLNL_					0	0	0		ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.3334350585938	2	520.830463	1039.64637	0.50672	0.00026392	-1.4258	-0.00074259	-0.91905	-0.00047867	520.829961504602	80.018	0.50259	79.799	79.535	80.038	-0.21923					15	11	2	0	0	0	0.024381	1	9595	9595		29.15	3.6994	1	94312			45982	7266	31854	31905	51400	51400					0.12813611541423597
LPMPASGTSL	10	Unmodified	_LPMPASGTSL_					0	0	0		nc|ENSG00000141738|Q14451-2|GRB7;nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	nc|ENSG00000141738|Q14451-2|GRB7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2544860839844	2	487.254785	972.495018	-0.81151	-0.00039541	1.1134	0.00054253	0.30192	0.00014711	487.2551887258111	64.615	0.79118	64.661	64.262	65.053	0.045502					63	20	5	0	0	0	0.65054	1	7532	7532		71.296	7.0884	1	2410800			45983	5519	31855	31906	51401	51401					0.007670054429354423
LPMSEITL	8	Unmodified	_LPMSEITL_					0	0	0			REV__nc|ENSG00000170956|P40198-2|CEACAM3	REV__nc|ENSG00000170956|P40198-2|CEACAM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2474670410156	2	452.246429	902.478305	-0.50016	-0.0002262	3.0585	0.0013832	2.5584	0.001157	452.24797314140966	33.232	1.5758	33.239	32.888	34.463	0.0066223					137	41	6	0	0	0	0.61897	1	2383	2383		74.517	8.0873	1	95624000	+		45984	26524	31856	31907	51402	51402					0.023165045569726317
LPMWNWEL	8	Unmodified	_LPMWNWEL_					0	0	0			REV__ENST00000418342.5_1_1:23420759-23435517:-|nuORF	REV__ENST00000418342.5_1_1:23420759-23435517:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7840576171875	2	544.76532	1087.51609	-1.0444	-0.00056895	-2.7035	-0.0014728	-3.7479	-0.0020417	544.7636000178203	51.25	0.11055	51.101	51.044	51.155	-0.14916					4	2	2	0	0	0	0.027866	1	5386	5386		37.028	0	1	77993	+		45985	32117	31857	31908	51403	51403					-0.02416984457545368
LPNAEPRSK	9	Unmodified	_LPNAEPRSK_					0	0	0		nc|ENSG00000240403|P43630-2|KIR3DL2;ENSG00000240403|ENST00000326321|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3233337402344	2	506.282723	1010.55089	-0.83496	-0.00042272	-0.32047	-0.00016225	-1.1554	-0.00058497	506.28249807335374	39.241	0.4623	39.264	39.063	39.526	0.023727					27	12	3	0	0	0	0.024397	1	3281	3281		31.53	0	1	394550			45986	10769	31858	31909	51404	51404					0.04603974674762412
LPNALTYND	9	Unmodified	_LPNALTYND_					0	0	0			REV__ENSG00000198727|ENST00000361789|MT-CYB	REV__ENSG00000198727|ENST00000361789|MT-CYB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.790283203125	2	510.753464	1019.49238	-0.098351	-5.0233E-05	0.8589	0.00043869	0.76055	0.00038845	510.75354617185667	43.034	0.82487	42.921	42.428	43.253	-0.11253					35	21	2	0	0	0	0.024523	1	3894	3894		29.15	9.1528	1	209550	+		45987	28457	31859	31910	51405	51405					-0.016591266904015356
LPNAVITRII	10	Unmodified	_LPNAVITRII_					0	0	0		ENST00000479871.1_1_9:116172333-116172573:-|nuORF;ENSG00000148229|ENST00000374171|POLE3	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.3513793945312	2	555.355691	1108.69683	0.52818	0.00029333	-4.3682	-0.0024259	-3.84	-0.0021326	555.3531407219169	99.771	0.71594	99.636	99.184	99.9	-0.13526					46	17	4	0	0	0	1.0992	2	12336	12336;12369		32.812	8.2932	1	852080			45988	6013	31860	31911	51406;51407	51406					0.14682857190791765
LPNELCHGP	9	Unmodified	_LPNELCHGP_					0	0	0			REV__ENSG00000196391|ENST00000354377|ZNF774	REV__ENSG00000196391|ENST00000354377|ZNF774	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2363586425781	2	490.236927	978.459301	0.35268	0.0001729	-2.3746	-0.0011641	-2.0219	-0.00099121	490.23557364228276	99.219	0.7554	99.219	98.823	99.578	0					49	16	4	0	0	0	0.83071	1	12677	12677		37.159	4.3467	1	405360	+		45989	28174	31861	31912	51408	51408					-0.030790320140795302
LPNIPGVTSPG	11	Unmodified	_LPNIPGVTSPG_					0	0	0		ENSG00000148730|ENST00000373218|EIF4EBP2	ENSG00000148730|ENST00000373218|EIF4EBP2	ENSG00000148730|ENST00000373218|EIF4EBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3021240234375	2	526.292756	1050.57096	0.81735	0.00043016	2.4566	0.0012929	3.2739	0.0017231	526.2934560860438	72.306	0.6987	72.316	71.953	72.652	0.0097656					29	17	3	0	0	0	0.024738	1	8712	8712		34.173	0.65696	1	302690			45990	6048	31862	31913	51409	51409					0.04769725614710296
LPNKFQLI	8	Unmodified	_LPNKFQLI_					0	0	0			REV__nc|ENSG00000017260|P98194-8|ATP2C1	REV__nc|ENSG00000017260|P98194-8|ATP2C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2637634277344	2	486.797478	971.580402	-0.47806	-0.00023272	-4.1731	-0.0020314	-4.6511	-0.0022642	486.7953379991372	30.787	0.67301	30.799	30.541	31.214	0.011797					42	15	4	0	0	0	0.027866	1	1966	1966		42.474	6.8562	1	776010	+		45991	36437	31863	31914	51410	51410					0.09347538690906276
LPNKRIMF	8	Unmodified	_LPNKRIMF_					0	0	0			REV__ENST00000396504.6_1_22:41923400-41923763:-|nuORF	REV__ENST00000396504.6_1_22:41923400-41923763:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8003845214844	2	509.796955	1017.57936	0.7901	0.00040279	4.4324	0.0022596	5.2225	0.0026624	509.7993478403479	59.317	0.9516	59.317	58.999	59.951	0					75	25	5	0	0	0	0.78609	1	6797	6797		60.294	2.064	1	4382000	+		45992	31739	31864	31915	51411	51411					0.07127001050355375
LPNKYEKL	8	Unmodified	_LPNKYEKL_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.791015625	2	502.792392	1003.57023	0.8755	0.00044019	-4.2294	-0.0021265	-3.3539	-0.0016863	502.7903275763559	18.378	1.0868	18.222	18.002	19.088	-0.15637					45	21	4	0	0	0	1.0338	1	286	286		31.955	4.0726	1	2187400			45993	2994	31865	31916	51412	51412					0.06858930965665877
LPNLGTLTT	9	Unmodified	_LPNLGTLTT_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-6|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2688293457031	2	465.26875	928.522947	-1.0222	-0.00047559	0.33421	0.0001555	-0.68797	-0.00032009	465.26867354600824	38.536	0.6688	38.536	38.199	38.868	0					48	17	4	0	0	0	0.18915	1	3232	3232		90.777	3.0802	1	5687200			45994	7517	31866	31917	51413	51413					0.055826516946467564
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.8346557617188	2	533.834591	1065.65463	-0.045142	-2.4098E-05	-0.32582	-0.00017394	-0.37096	-0.00019803	533.8342289269806	81.141	0.85419	80.903	80.49	81.345	-0.23784					59	20	4	0	0	0	0.1158	1	9742	9742		107.01	10.817	1	1258200			45995	9637	31867	31918	51414	51414					0.12442881782430959
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.8345336914062	2	533.834591	1065.65463	-0.15212	-8.1207E-05	-0.16011	-8.5473E-05	-0.31223	-0.00016668	533.834359711319	81.155	1.1131	80.962	80.521	81.634	-0.19334					63	26	4	0	0	0	0.1158	2	9757	9757;9775		107.01	13.812	1	1142300			45996	9637	31867	31918	51415;51416	51415					0.12442881782430959
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.83447265625	2	533.834591	1065.65463	-0.62443	-0.00033334	0.39983	0.00021345	-0.2246	-0.0001199	533.8346284752289	81.107	1.0746	80.964	80.495	81.57	-0.14249					62	25	4	0	0	0	0.16638	2	9733	9733;9748		95.815	20.954	1	1112500			45997	9637	31867	31918	51417;51418	51417					0.12442881782430959
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.834591	1065.65463	-0.95117	-0.00050777	0.23277	0.00012426	-0.7184	-0.00038351	533.8347348355027	81.217	0.65193	81.217	80.978	81.63	0	0.1356	0.00020207	NaN	107.01	20	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90649			45998	9637	31867	31918							0.12442881782430959
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.834591	1065.65463	-1.2093	-0.00064554	0.32079	0.00017125	-0.88847	-0.0004743	533.8346377827959	81.287	0.40309	81.156	80.936	81.339	-0.13075	0.07469	0.00029604	NaN	107.01	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125410			45999	9637	31867	31918							0.12442881782430959
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.834591	1065.65463	-1.1601	-0.0006193	-0.14206	-7.5837E-05	-1.3022	-0.00069514	533.834518308169	81.261	0.68987	81.285	80.968	81.658	0.023903	0.20412	-0.00019813	NaN	107.01	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106210			46000	9637	31867	31918							0.12442881782430959
LPNRADLR	8	Unmodified	_LPNRADLR_					0	0	0			REV__ENST00000486637.1_1_1:38155869-38156178:-|nuORF	REV__ENST00000486637.1_1_1:38155869-38156178:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.3039245605469	2	477.777608	953.540663	0.38926	0.00018598	-0.3361	-0.00016058	0.053151	2.5394E-05	477.7773510389815	18.886	0.34187	18.754	18.549	18.891	-0.13147					11	6	2	0	0	0	0.027866	1	332	332		44.117	10.601	1	89302	+		46001	33598	31868	31919	51419	51419					0.062034117401822186
LPNRGGGSS	9	Unmodified	_LPNRGGGSS_					0	0	0			REV__ENSG00000128917|ENST00000249749|DLL4;REV__ENST00000557876.1_1_15:41221689-41222731:+|nuORF	REV__ENSG00000128917|ENST00000249749|DLL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7515869140625	2	422.717216	843.419879	-0.61903	-0.00026167	0.21782	9.2077E-05	-0.4012	-0.0001696	422.7153655642505	89.77	0.16719	89.77	89.689	89.856	0					5	3	2	0	0	0	0.024541	1	11328	11328		10.866	0	1	15832	+		46002	23018;35083	31869	31920	51420	51420					-0.008094159732650041
LPNRNVHLD	9	Unmodified	_LPNRNVHLD_					0	0	0			REV__ENST00000392350.7_1_2:190636018-190636162:-|nuORF	REV__ENST00000392350.7_1_2:190636018-190636162:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3304443359375	2	539.293622	1076.57269	-1.3946	-0.00075211	-4.0131	-0.0021643	-5.4078	-0.0029164	539.7933682616195	45.009	0.68486	44.798	44.436	45.121	-0.21109					34	17	3	0	0	0	0.024427	1	4217	4217		26.693	4.9906	1	139790	+		46003	31604	31870	31921	51421	51421					0.03746779423318003
LPNTSPALLS	10	Unmodified	_LPNTSPALLS_					0	0	0			REV__ENSG00000196313|ENST00000434423|POM121	REV__ENSG00000196313|ENST00000434423|POM121	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.78839111328125	2	506.787307	1011.56006	-0.072849	-3.6919E-05	-0.91638	-0.00046441	-0.98923	-0.00050133	506.7866795278597	49.037	0.85478	49.037	48.69	49.544	0					62	23	3	0	0	0	0.74632	1	5050	5050		64.207	2.0999	1	3169300	+		46004	28162	31871	31922	51422	51422					0.05474323240423473
LPNWKVNV	8	Unmodified	_LPNWKVNV_					0	0	0		ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.80584716796875	2	485.279452	968.544351	-0.215	-0.00010434	-3.7058	-0.0017984	-3.9208	-0.0019027	485.277587388049	34.415	0.70072	34.41	34.029	34.73	-0.0045624					42	17	4	0	0	0	0.027866	1	2536	2536		17.365	0	1	866900			46005	8129	31872	31923	51423	51423					0.05882081514039328
LPPALHAK	8	Unmodified	_LPPALHAK_					0	0	0			REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|53|2|anti-sense;REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|69|3|anti-sense	REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|53|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.85931396484375	2	423.763438	845.512323	-0.2536	-0.00010747	1.811	0.00076743	1.5574	0.00065996	423.7638210911069	42.895	0.46725	42.669	42.484	42.951	-0.22597					16	11	2	0	0	0	0.027866	1	3901	3901		8.2313	0	1	74581	+		46006	37611;37606	31873	31924	51424	51424					0.08338713830892175
LPPAPRHQT	9	Unmodified	_LPPAPRHQT_					0	0	0			REV__ENST00000564774.5_1_16:84214522-84215086:-|nuORF	REV__ENST00000564774.5_1_16:84214522-84215086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3025207519531	2	508.785433	1015.55631	-0.54035	-0.00027492	-0.28501	-0.00014501	-0.82536	-0.00041993	508.78518658503884	56.431	0.921	56.529	56.209	57.13	0.097893					54	25	4	0	0	0	0.024477	1	6170	6170		35.618	8.9254	1	2393900	+		46007	35258	31874	31925	51425	51425					0.04915698257229906
LPPCFTLL	8	Unmodified	_LPPCFTLL_					0	0	0			REV__ENST00000460264.5_1_9:137714800-137714866:+|nuORF	REV__ENST00000460264.5_1_9:137714800-137714866:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24322509765625	2	452.254057	902.493561	0.48389	0.00021884	1.2138	0.00054893	1.6976	0.00076777	452.25420763137674	53.803	0.42802	53.803	53.582	54.01	0					16	11	3	0	0	0	0.027866	1	5875	5875		49.211	6.7363	1	516130	+		46008	32842	31875	31926	51426	51426					0.0384141614483724
LPPDVEFN	8	Unmodified	_LPPDVEFN_					0	0	0		CON__P34955	CON__P34955	CON__P34955	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7310791015625	2	465.732	929.449448	0.91856	0.0004278	-3.054	-0.0014224	-2.1355	-0.00099455	465.7305747455732	110.17	0.36309	110.17	109.99	110.35	0					14	9	2	0	0	0	1.0574	1	14009	14009		26.796	0.10319	1	103720		+	46009	529	31876	31927	51427	51427					-0.018098967478067607
LPPEADPRLI	10	Unmodified	_LPPEADPRLI_					0	0	0		nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.27001953125	2	560.821681	1119.62881	-0.68193	-0.00038244	2.1103	0.0011835	1.4284	0.00080105	560.8230843325111	27.065	0.64133	26.908	26.544	27.185	-0.15664					23	14	2	0	0	0	0.03519	1	1420	1420		44.377	25.274	1	71551			46010	6858	31877	31928	51428	51428					0.07377987540144204
LPPEPAWPT	9	Unmodified	_LPPEPAWPT_					0	0	0		chr14:24164134-24164748|259|17.76|0.0|20.76|+|2|IRF9,IRF9|1	chr14:24164134-24164748|259|17.76|0.0|20.76|+|2|IRF9,IRF9|1	chr14:24164134-24164748|259|17.76|0.0|20.76|+|2|IRF9,IRF9|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2713317871094	2	504.263468	1006.51238	-0.35703	-0.00018004	-3.8655	-0.0019492	-4.2225	-0.0021293	504.2615931572143	57.152	0.56686	57.152	56.778	57.345	0					23	15	2	0	0	0	0.024405	1	6439	6439		14.865	0	1	122690			46011	339	31878	31929	51429	51429					0.009386690402379827
LPPFTYEI	8	Unmodified	_LPPFTYEI_					0	0	0			REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF	REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.260498046875	2	490.260394	978.506234	-0.68729	-0.00033695	-4.3554	-0.0021353	-5.0427	-0.0024723	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	1.0574	1	13090	13090		26.796	0.10319	1	5001000	+		46012	22312	31879	31930	51430	51430					0.016121508087167058
LPPGLQPQ	8	Unmodified	_LPPGLQPQ_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.2630920410156	2	425.245078	848.475603	-0.36648	-0.00015585	1.998	0.00084965	1.6315	0.00069381	425.24755019753144	46.24	0.31973	46.24	45.953	46.273	0					12	8	2	0	0	0	0.027866	1	4555	4555		35.201	0	1	40199	+		46013	36535	31880	31931	51431	51431					0.04530417214334648
LPPGQAHT	8	Unmodified	_LPPGQAHT_					0	0	0			REV__ENST00000371370.7_1_1:54411767-54412118:+|nuORF	REV__ENST00000371370.7_1_1:54411767-54412118:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.71868896484375	2	410.719227	819.423902	0.96756	0.0003974	-1.8848	-0.00077414	-0.91727	-0.00037674	410.7183696284328	96.072	1.6868	95.949	95.421	97.108	-0.12305					87	38	4	0	0	0	1.0574	1	11910	11910		26.796	6.3143	1	1564100	+		46014	31158	31881	31932	51432	51432					0.006966735204173347
LPPGVIVM	8	Unmodified	_LPPGVIVM_					0	0	0		ENSG00000168772|ENST00000394767|CXXC4;nc|ENSG00000168772|Q9H2H0|CXXC4	ENSG00000168772|ENST00000394767|CXXC4	ENSG00000168772|ENST00000394767|CXXC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.7533874511719	2	413.248775	824.482997	0.95514	0.00039471	3.2966	0.0013623	4.2517	0.001757	413.25004120864395	22.729	0.50805	22.527	22.285	22.793	-0.20199					15	10	2	0	0	0	0.027866	1	781	781		24.504	0	1	57622			46015	7860	31882	31933	51433	51433					0.06373433490398384
LPPHARRI	8	Unmodified	_LPPHARRI_					0	0	0		ENST00000240719.7_1_19:58038869-58038932:+|nuORF	ENST00000240719.7_1_19:58038869-58038932:+|nuORF	ENST00000240719.7_1_19:58038869-58038932:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.74786376953125	2	480.29851	958.582468	0.058358	2.8029E-05	2.8308	0.0013596	2.8891	0.0013876	480.29988395292213	102.55	0.82535	102.55	101.91	102.73	0					24	18	2	0	0	0	0.027866	1	13084	13084		52.299	0	1	95983			46016	11283	31883	31934	51434	51434					0.10152012219373319
LPPHIQTKT	9	Unmodified	_LPPHIQTKT_					0	0	0		ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7805786132812	2	517.803291	1033.59203	-1.3241	-0.00068564	-1.1881	-0.00061519	-2.5122	-0.0013008	517.80240028343	44.466	0.32774	44.321	44.131	44.459	-0.14471					14	9	2	0	0	0	0.024457	1	4246	4246		29.15	3.5755	1	315630			46017	5734	31884	31935	51435	51435					0.07657735714224145
LPPHVRIW	8	Unmodified	_LPPHVRIW_					0	0	0		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENSG00000125746|ENST00000245925|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF;ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	nc|ENSG00000125746|O95834-2|EML2;ENSG00000066629|ENST00000262233|EML1	nc|ENSG00000125746|O95834-2|EML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2824401855469	2	509.303262	1016.59197	0.78239	0.00039847	4.2981	0.002189	5.0805	0.0025875	509.30533148021897	97.989	0.28516	97.853	97.605	97.891	-0.13625					9	6	2	0	0	0	0.027866	1	12100	12100		29.842	0.69198	1	88729			46018	18245;1342	31885	31936	51436	51436					0.08433780504890365
LPPLGVKTK	9	Unmodified	_LPPLGVKTK_					0	0	0			REV__nc|ENSG00000138029|P55084-2|HADHB	REV__nc|ENSG00000138029|P55084-2|HADHB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2605895996094	2	476.813128	951.611703	-0.53524	-0.00025521	2.0648	0.0009845	1.5295	0.00072929	476.81571818695835	28.3	0.16053	28.054	27.961	28.121	-0.24524					5	3	2	0	0	0	0.024541	1	1642	1642		9.7057	4.1478	1	45816	+		46019	23807	31886	31937	51437	51437					0.13396111725000992
LPPLLIGYL	9	Unmodified	_LPPLLIGYL_					0	0	0		ENST00000552414.1_1_12:46758372-46758504:-|nuORF	ENST00000552414.1_1_12:46758372-46758504:-|nuORF	ENST00000552414.1_1_12:46758372-46758504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7961730957031	2	499.817879	997.621205	-0.12422	-6.2089E-05	-4.1645	-0.0020815	-4.2887	-0.0021436	499.8155778884069	66.852	0.42194	66.876	66.769	67.191	0.023911					17	9	2	0	0	0	0.024541	1	7871	7871		21.702	0	1	1385200			46020	16624	31887	31938	51438	51438					0.1222988001052272
LPPLLTALL	9	Unmodified	_LPPLLTALL_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2602844238281	2	475.817879	949.621205	-1.164	-0.00055385	4.0675	0.0019354	2.9035	0.0013816	475.8197199750853	40.779	0.59103	40.549	40.45	41.041	-0.2303					22	15	2	0	0	0	0.024541	1	3581	3581		19.36	11.129	1	109010	+		46021	25917	31888	31939	51439	51439					0.14437880010507342
LPPLPLPRR	9	Unmodified	_LPPLPLPRR_					0	0	0		ENST00000532676.1_1_11:6702431-6703624:-|nuORF;ENST00000529958.1_1_11:6703351-6704139:-|nuORF;ENSG00000158042|ENST00000288937|MRPL17	ENST00000532676.1_1_11:6702431-6703624:-|nuORF	ENST00000532676.1_1_11:6702431-6703624:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8191528320312	2	529.845294	1057.67603	-0.048406	-2.5647E-05	3.0254	0.001603	2.977	0.0015773	529.84695245231	19.812	0.24547	19.651	19.48	19.725	-0.16079					5	4	2	0	0	0	0.024535	1	466	466		12.207	0	1	21435			46022	6641	31889	31940	51440	51440					0.14950311601796784
LPPMLLLLL	9	Unmodified	_LPPMLLLLL_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11;ENSG00000099953|ENST00000215743|MMP11	ENSG00000115616|ENST00000233969|SLC9A2;chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2878112792969	2	511.837757	1021.66096	0.52006	0.00026618	3.2348	0.0016557	3.7549	0.0019219	511.83937701912595	72.251	0.92683	71.969	71.62	72.547	-0.28124					75	23	5	0	0	0	0.024541	1	8715	8715		8.8223	0	1	5757900			46023	3474;384	31890	31941	51441	51441					0.1509968368960699
LPPNESGVL	9	Unmodified	_LPPNESGVL_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2535095214844	2	463.2531	924.491647	1.0668	0.00049421	-0.082923	-3.8414E-05	0.98389	0.00045579	463.2529253193515	110.13	0.40806	110.13	109.99	110.4	0					25	10	3	0	0	0	0.98128	1	14016	14016		24.203	1.1603	1	252850	+		46024	24424	31891	31942	51442	51442					0.026380786605727735
LPPPAPQQQV	10	Unmodified	_LPPPAPQQQV_					0	0	0		ENST00000557699.5_1_14:23818379-23821759:-|nuORF	ENST00000557699.5_1_14:23818379-23821759:-|nuORF	ENST00000557699.5_1_14:23818379-23821759:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.8004760742188	2	537.800749	1073.58694	-0.029912	-1.6086E-05	1.1694	0.00062889	1.1395	0.00061281	537.8008788112099	17.049	0.37177	16.906	16.812	17.183	-0.14278					16	9	3	0	0	0	1.1237	1	115	115		23.042	2.0956	1	37490			46025	16738	31892	31943	51443	51443					0.0530943185160595
LPPPHTSK	8	Unmodified	_LPPPHTSK_					0	0	0			REV__ENSG00000049323|ENST00000404816|LTBP1	REV__ENSG00000049323|ENST00000404816|LTBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.24530029296875	2	438.750527	875.486502	0.35095	0.00015398	0.32501	0.0001426	0.67595	0.00029657	438.75052737652766	52.35	0.65962	52.202	51.985	52.645	-0.14735					39	16	4	0	0	0	0.027866	1	5549	5549		18.324	6.1176	1	1315300	+		46026	20145	31893	31944	51444	51444					0.04377819588626153
LPPPHTSK	8	Unmodified	_LPPPHTSK_					0	0	0			REV__ENSG00000049323|ENST00000404816|LTBP1	REV__ENSG00000049323|ENST00000404816|LTBP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	438.750527	875.486502	0.038772	1.7011E-05	0.48023	0.0002107	0.519	0.00022771	438.7506216698449	52.252	0.58526	52.252	52.049	52.634	0	0.02608	-2.7199E-05	NaN	24.203	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1595600	+		46027	20145	31893	31944							0.04377819588626153
LPPPHTSK	8	Unmodified	_LPPPHTSK_					0	0	0			REV__ENSG00000049323|ENST00000404816|LTBP1	REV__ENSG00000049323|ENST00000404816|LTBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	438.750527	875.486502	-0.13647	-5.9875E-05	0.69328	0.00030418	0.55681	0.0002443	438.75069709045465	52.131	0.70701	52.223	52.003	52.71	0.091938	-0.0026212	0.00015975	NaN	24.203	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692250	+		46028	20145	31893	31944							0.04377819588626153
LPPPLSHPS	9	Unmodified	_LPPPLSHPS_					0	0	0			REV__nc|ENSG00000140367|Q8WVN8-2|UBE2Q2	REV__nc|ENSG00000140367|Q8WVN8-2|UBE2Q2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2824401855469	2	472.763635	943.512717	0.31921	0.00015091	-0.22258	-0.00010523	0.096628	4.5682E-05	472.7634314784869	50.684	0.70461	50.407	50.149	50.853	-0.27643					32	18	3	0	0	0	0.024517	1	5185	5185		26.796	13.837	1	1176500	+		46029	24006	31894	31945	51445	51445					0.03870088760083945
LPPPPGSPLGH	11	Unmodified	_LPPPPGSPLGH_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.3175048828125	2	534.795466	1067.57638	-0.72522	-0.00038785	0.82434	0.00044085	0.099112	5.3005E-05	534.7962345844064	33.902	0.53706	33.7	33.364	33.901	-0.20106					21	13	3	0	0	0	0.024729	1	2411	2411		15.642	0	1	80357			46030	897	31895	31946	51446	51446					0.045294491971844764
LPPPPMQYI	9	Unmodified	_LPPPPMQYI_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2844848632812	2	528.283346	1054.55214	-0.78274	-0.00041351	4.2506	0.0022455	3.4679	0.001832	528.2854444798484	35.757	0.56548	35.552	35.186	35.752	-0.20518					43	14	4	0	0	0	0.44472	1	2756	2756		62.978	13.537	1	2211600			46031	6492	31896	31947	51447	51447					0.027044727193015206
LPPPRACL	8	Unmodified	_LPPPRACL_					0	0	0			REV__ENST00000564295.1_1_16:56691699-56691999:+|nuORF	REV__ENST00000564295.1_1_16:56691699-56691999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.9155578613281	2	433.749473	865.484393	0.49309	0.00021388	0.76556	0.00033206	1.2586	0.00054594	433.74974896666464	32.786	0.68209	32.849	32.465	33.147	0.062889					37	17	3	0	0	0	0.027866	1	2202	2202		20.482	8.275	1	462910	+		46032	30516	31897	31948	51448	51448					0.04627067579156119
LPPPRPPLAV	10	Unmodified	_LPPPRPPLAV_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8075561523438	2	528.831852	1055.64915	-0.28903	-0.00015285	-0.14896	-7.8774E-05	-0.43799	-0.00023162	528.8316335047434	50.159	1.0058	50.008	49.52	50.526	-0.1512					56	28	4	0	0	0	0.03519	1	5193	5193		47.916	9.1095	1	1666700			46033	3886	31898	31949	51449	51449					0.12355202990602265
LPPPSLKKC	9	Unmodified	_LPPPSLKKC_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2744140625	2	491.791338	981.568123	-1.2801	-0.00062954	4.1235	0.0020279	2.8434	0.0013983	491.79335828677995	37.912	0.39926	37.912	37.735	38.134	0					20	11	2	0	0	0	0.024457	1	3167	3167		21.96	0	1	292010	+		46034	23341	31899	31950	51450	51450					0.07660178956200525
LPPPVARKP	9	Unmodified	_LPPPVARKP_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79779052734375	2	487.810919	973.607286	-0.66036	-0.00032213	3.6606	0.0017857	3.0003	0.0014636	487.8124709425367	50.161	0.45942	50.161	49.986	50.445	0					19	13	2	0	0	0	0.024466	1	5263	5263		33.516	18.651	1	201570			46035	4847	31900	31951	51451	51451					0.11942647302078058
LPPPVSFIS	9	Unmodified	_LPPPVSFIS_					0	0	0			REV__ENST00000511319.5_1_4:100869621-100871200:-|nuORF	REV__ENST00000511319.5_1_4:100869621-100871200:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7520751953125	2	478.776211	955.537869	-0.37354	-0.00017884	2.575	0.0012328	2.2014	0.001054	478.7775605189018	33.436	0.37988	33.442	33.154	33.534	0.0066261					14	10	2	0	0	0	0.024262	1	2361	2361		38.806	0	1	79723	+		46036	34118	31901	31952	51452	51452					0.058321435626680795
LPPRPPRPQ	9	Unmodified	_LPPRPPRPQ_					0	0	0			REV__MMP24|p.G367R|1|0.32|ENSG00000125966|chr20:35267324-35267324|G/A|missense_variant	REV__MMP24|p.G367R|1|0.32|ENSG00000125966|chr20:35267324-35267324|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2886352539062	2	529.3169	1056.61925	-0.90118	-0.00047701	3.0569	0.0016181	2.1557	0.001141	529.3177103413692	45.523	0.70405	45.523	45.181	45.885	0					59	20	5	0	0	0	0.024323	1	4438	4438		44.117	22.157	1	1841100	+		46037	22865	31902	31953	51453	51453					0.09320264045254589
LPPRRVWVQ	9	Unmodified	_LPPRRVWVQ_					0	0	0		ENST00000372902.3_1_X:100603579-100603852:-|nuORF	ENST00000372902.3_1_X:100603579-100603852:-|nuORF	ENST00000372902.3_1_X:100603579-100603852:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8432006835938	2	575.845825	1149.6771	-0.82546	-0.00047534	-4.0687	-0.002343	-4.8942	-0.0028183	575.8433114529906	88.92	2.4021	88.92	87.573	89.975	0					191	57	4	0	0	0	0.43973	1	11226	11226		63.306	8.53	1	1520800			46038	13061	31903	31954	51454	51454					0.1082452597070187
LPPSLDIP	8	Unmodified	_LPPSLDIP_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A;ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2475280761719	2	426.247286	850.48002	-0.6581	-0.00028052	-0.60691	-0.00025869	-1.265	-0.00053921	426.2478440514205	103.15	1.0941	103.15	102.81	103.9	0					53	26	4	0	0	0	1.0239	1	13230	13230		33.516	5.2613	1	879380			46039	1963	31904	31955	51455	51455					0.04879881637236849
LPPSPLTT	8	Unmodified	_LPPSPLTT_					0	0	0			REV__nc|ENSG00000148824|Q9BT17-2|MTG1	REV__nc|ENSG00000148824|Q9BT17-2|MTG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.23760986328125	2	413.239461	824.46437	0.70486	0.00029127	-3.2249	-0.0013327	-2.5201	-0.0010414	413.23803468706404	89.794	1.1563	89.772	89.409	90.566	-0.021645					67	27	4	0	0	0	1.0239	1	11290	11290		33.516	0	1	1921700	+		46040	32862	31905	31956	51456	51456					0.04511595120175116
LPPSPLTT	8	Unmodified	_LPPSPLTT_					0	0	0			REV__nc|ENSG00000148824|Q9BT17-2|MTG1	REV__nc|ENSG00000148824|Q9BT17-2|MTG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.238037109375	2	413.239461	824.46437	-0.035551	-1.4691E-05	-2.8948	-0.0011963	-2.9304	-0.001211	413.2381660612718	76.315	4.9174	76.047	73.925	78.842	-0.26806					200	118	3	0	0	0	0.97924	1	9058	9058		40.573	5.3719	1	1178700	+		46041	32862	31905	31956	51457	51457					0.04511595120175116
LPPSQRVLA	9	Unmodified	_LPPSQRVLA_					0	0	0		ENSG00000181894|ENST00000598312|ZNF329	ENSG00000181894|ENST00000598312|ZNF329	ENSG00000181894|ENST00000598312|ZNF329	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.2725830078125	2	490.798009	979.581465	-0.06107	-2.9973E-05	-0.25759	-0.00012642	-0.31866	-0.0001564	490.7979565291583	31.19	0.42618	31.038	30.806	31.232	-0.15231					21	10	3	0	0	0	0.024506	1	2028	2028		23.042	0	1	237190			46042	9078	31906	31957	51458	51458					0.09085753059798662
LPPSRNRPK	9	Unmodified	_LPPSRNRPK_					0	0	0		ENST00000532914.1_1_11:35641541-35642221:+|nuORF	ENST00000532914.1_1_11:35641541-35642221:+|nuORF	ENST00000532914.1_1_11:35641541-35642221:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8422241210938	2	532.819807	1063.62506	-0.4194	-0.00022346	2.4363	0.0012981	2.0169	0.0010746	532.8210116457577	51.649	0.58175	51.649	51.395	51.977	0					27	16	2	0	0	0	0.024466	1	5451	5451		18.324	0	1	346770			46043	16302	31907	31958	51459	51459					0.09579362556928572
LPPSSGLPV	9	Unmodified	_LPPSSGLPV_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.7517395019531	2	433.752736	865.490919	-0.11927	-5.1733E-05	-2.6732	-0.0011595	-2.7925	-0.0012112	433.7514853429107	20.01	1.9787	19.905	19.066	21.045	-0.10477					82	40	3	0	0	0	0.75282	1	471	471		42.474	1.9018	1	1132100			46044	1775	31908	31959	51460	51460					0.05279284011544405
LPPSSKAF	8	Unmodified	_LPPSSKAF_					0	0	0		nc|ENSG00000169604|Q9H6X2-6|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.73992919921875	2	423.739628	845.464704	0.37882	0.00016052	0.094855	4.0194E-05	0.47368	0.00020072	423.73952872254847	72.07	1.0718	71.781	71.427	72.499	-0.28858					59	27	3	0	0	0	0.78609	1	8723	8723		60.294	0	1	1525800			46045	18502	31909	31960	51461	51461					0.03579014840045147
LPPSSTPAWLL	11	Unmodified	_LPPSSTPAWLL_					0	0	0			REV__ENST00000162391.7_1_12:8202123-8205403:+|nuORF	REV__ENST00000162391.7_1_12:8202123-8205403:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	590.7799072265625	2	591.331882	1180.64921	0.013907	8.2239E-06	-0.64669	-0.00038241	-0.63279	-0.00037419	591.3315853357925	84.84	0.61658	84.681	84.405	85.021	-0.15868					41	14	4	0	0	0	0.024788	1	10243	10243		19.997	5.8596	1	176650	+		46046	29272	31910	31961	51462	51462					0.06611158199939382
LPPTMNPIV	9	Oxidation (M)	_LPPTM(Oxidation (M))NPIV_		LPPTM(1)NPIV		LPPTM(91)NPIV	0	0	1		ENSG00000181074|ENST00000641350|OR52N4;ENSG00000180988|ENST00000317037|OR52N2	ENSG00000181074|ENST00000641350|OR52N4	ENSG00000181074|ENST00000641350|OR52N4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.32421875	2	499.272978	996.531403	1.1639	0.00058112	3.2672	0.0016312	4.4311	0.0022124	499.27446506170253	64.131	1.4617	64.131	63.558	65.02	0					49	39	2	0	0	0	0.022756	1	7452	7452		90.777	10.837	1	1104700			46047	9022	31911	31962	51463	51463		376			0.03299882339638316
LPPVTFTETL	10	Unmodified	_LPPVTFTETL_					0	0	0			REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF	REV__ENST00000370587.5_1_1:85491576-85491813:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.2991333007812	2	559.310615	1116.60668	-0.74527	-0.00041684	-2.9345	-0.0016413	-3.6798	-0.0020581	559.3088568357124	28.239	0.4552	28.235	28.003	28.458	-0.0042019					18	10	2	0	0	0	0.03519	1	1643	1643		32.812	0	1	174910	+		46048	31133	31912	31963	51464	51464					0.053037630717199136
LPPWPIYR	8	Unmodified	_LPPWPIYR_					0	0	0		ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENSG00000114902|ENST00000619898|SPCS1	ENSG00000114902|ENST00000619898|SPCS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2823486328125	2	521.297645	1040.58074	0.21923	0.00011428	0.90051	0.00046943	1.1197	0.00058372	521.2978847232769	22.372	0.42761	22.17	21.903	22.33	-0.20199					12	8	2	0	0	0	0.027866	1	754	754		39.021	0	1	26785			46049	3393	31913	31964	51465	51465					0.06206958410734842
LPQANRDTL	9	Unmodified	_LPQANRDTL_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.2800903320312	2	514.28018	1026.54581	-0.0099003	-5.0915E-06	-0.00051167	-2.6314E-07	-0.010412	-5.3547E-06	514.2802203823646	39.511	1.0633	39.511	39.112	40.176	0					61	29	3	0	0	0	0.03849	1	3388	3388		134.81	30.064	1	9966200			46050	6893	31914	31965	51466	51466					0.033596708121422125
LPQDFLQLQV	10	Unmodified	_LPQDFLQLQV_					0	0	0		ENST00000310074.7_1_4:7057430-7057760:+|nuORF	ENST00000310074.7_1_4:7057430-7057760:+|nuORF	ENST00000310074.7_1_4:7057430-7057760:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.8948059082031	3	400.892284	1199.65502	2.4567	0.00098489	3.5949	0.0014412	6.0516	0.002426	400.89370501597745	26.311	0.66363	26.392	26.051	26.714	0.081293					49	15	4	0	0	0	0.88978	1	1284	1284		54.722	5.2565	1	2978300			46051	12054	31915	31966	51467	51467					0.06318256711620052
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.810791015625	2	512.811116	1023.60768	-0.67884	-0.00034811	0.42247	0.00021665	-0.25636	-0.00013147	512.8112175143686	58.41	0.94627	58.223	57.919	58.866	-0.18705					65	25	4	0	0	0	0.14181	1	6578	6578		101.25	19.012	1	7534000			46052	10498	31916	31967	51468	51468					0.09682022231265819
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.811116	1023.60768	-0.02214	-1.1354E-05	-0.15311	-7.8515E-05	-0.17525	-8.9869E-05	512.810932857045	58.144	0.87821	58.144	57.872	58.75	0	-0.013871	-0.00041227	NaN	101.25	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8457400			46053	10498	31916	31967							0.09682022231265819
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	512.811116	1023.60768	-0.59132	-0.00030324	0.35999	0.00018461	-0.23134	-0.00011863	512.8112239906359	58.015	0.98623	58.106	57.759	58.745	0.091217	-0.05134	0.00011397	NaN	101.25	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7491900			46054	10498	31916	31967							0.09682022231265819
LPQGSPLQQP	10	Unmodified	_LPQGSPLQQP_					0	0	0		ENST00000604367.1_1_3:46963549-46963975:-|nuORF	ENST00000604367.1_1_3:46963549-46963975:-|nuORF	ENST00000604367.1_1_3:46963549-46963975:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2716064453125	2	532.790381	1063.56621	-0.66408	-0.00035381	-0.81077	-0.00043197	-1.4749	-0.00078579	532.790157681373	54.834	0.86471	54.932	54.696	55.561	0.098015					33	23	2	0	0	0	0.03519	1	6010	6010		54.776	19.158	1	1181200			46055	17554	31917	31968	51469	51469					0.036968414719467546
LPQIPFLL	8	Unmodified	_LPQIPFLL_					0	0	0		chr6:116125507-116158614|449|43.98|0.81|5.76|-|ENST00000418500|COL10A1,COL10A1;ENSG00000123500|ENST00000651968|COL10A1	chr6:116125507-116158614|449|43.98|0.81|5.76|-|ENST00000418500|COL10A1,COL10A1	chr6:116125507-116158614|449|43.98|0.81|5.76|-|ENST00000418500|COL10A1,COL10A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.795166015625	2	470.796946	939.57934	-0.78049	-0.00036745	-4.2846	-0.0020172	-5.0651	-0.0023846	470.7948979440245	42.829	1.0896	42.603	42.22	43.31	-0.22597					83	28	5	0	0	0	0.44541	2	3857	3857;3893		90.939	3.1847	1	5810100			46056	409	31918	31969	51470;51471	51470					0.10713324321989148
LPQKERQVA	9	Unmodified	_LPQKERQVA_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.242431640625	2	534.811648	1067.60874	-0.1771	-9.4717E-05	3.7872	0.0020254	3.6101	0.0019307	534.8134972745303	56.458	0.54809	56.241	55.92	56.468	-0.21607					22	13	2	0	0	0	0.02435	1	6084	6084		51.335	8.9393	1	270710			46057	6884	31919	31970	51472	51472					0.07764236600178265
LPQLAAAKQAL	11	Unmodified	_LPQLAAAKQAL_					0	0	0			REV__ENSG00000103932|ENST00000304330|RPAP1	REV__ENSG00000103932|ENST00000304330|RPAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3433837890625	2	562.345323	1122.67609	-0.29633	-0.00016664	-3.2662	-0.0018367	-3.5625	-0.0020034	562.3433631418777	89.188	3.1299	89.06	88.322	91.452	-0.12774					179	74	4	0	0	0	1.0292	1	10938	10938		30.318	6.115	1	795170	+		46058	21407	31920	31971	51473	51473					0.11966266811100468
LPQLQDLGLN	10	Unmodified	_LPQLQDLGLN_					0	0	0		ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.2725219726562	2	555.811313	1109.60807	-0.009312	-5.1757E-06	3.9207	0.0021792	3.9114	0.002174	555.8132224587167	95.263	0.90184	95.263	94.919	95.821	0					45	20	3	0	0	0	0.03519	1	12201	12201		56.434	29.741	1	511090			46059	12832	31921	31972	51474	51474					0.057653971604850085
LPQLQDLGLN	10	Unmodified	_LPQLQDLGLN_					0	0	0		ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.811313	1109.60807	0.35101	0.0001951	3.5302	0.0019621	3.8812	0.0021572	555.8130447909782	95.257	0.77615	95.261	94.922	95.698	0.0041122	0.097743	-0.00040382	NaN	56.434	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432200			46060	12832	31921	31972							0.057653971604850085
LPQLQDLGLN	10	Unmodified	_LPQLQDLGLN_					0	0	0		ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	555.811313	1109.60807	0.52236	0.00029033	5.1317	0.0028522	5.654	0.0031426	555.8124618015112	95.215	0.26115	95.092	94.898	95.16	-0.12251	-0.070597	0.0013765	NaN	56.434	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50742			46061	12832	31921	31972							0.057653971604850085
LPQLQDLGLN	10	Unmodified	_LPQLQDLGLN_					0	0	0		ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	ENST00000366987.6_2_1:212792976-212793303:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	555.811313	1109.60807	-0.39938	-0.00022198	4.4719	0.0024855	4.0725	0.0022636	555.8129521799833	95.186	0.47887	95.034	94.839	95.317	-0.15186	-0.12897	0.00064304	NaN	56.434	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82133			46062	12832	31921	31972							0.057653971604850085
LPQLRILD	8	Unmodified	_LPQLRILD_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.3005676269531	2	484.300384	966.586216	-0.14615	-7.0783E-05	-0.31804	-0.00015403	-0.46419	-0.00022481	484.3002610097709	60.256	1.6236	60.007	59.685	61.308	-0.2495					102	40	5	0	0	0	0.71833	1	6683	6683		65.803	0	1	21556000			46063	4728	31922	31973	51475	51475					0.10158637202562204
LPQLTGPVL	9	Unmodified	_LPQLTGPVL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2896423339844	2	469.289485	936.564418	0.5127	0.00024061	-0.19762	-9.2742E-05	0.31508	0.00014786	469.2892192211912	78.834	0.82726	78.852	78.567	79.394	0.018677					44	19	4	0	0	0	0.50848	1	9692	9692		58.782	14.665	1	741490			46064	908;4176	31923	31974	51476	51476					0.09359832453992567
LPQLTGPVL	9	Unmodified	_LPQLTGPVL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-4|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	469.289485	936.564418	0.00055814	2.6193E-07	0.2756	0.00012934	0.27616	0.0001296	469.28948070087995	78.79	1.042	78.79	78.531	79.573	0	-0.022006	0.00018739	NaN	58.782	46	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771490			46065	908;4176	31923	31974							0.09359832453992567
LPQLTRPLAPV	11	Unmodified	_LPQLTRPLAPV_					0	0	0			REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	602.8743896484375	2	602.874248	1203.73394	0.13798	8.3183E-05	-0.015482	-9.3336E-06	0.1225	7.3849E-05	602.8741102944784	63.75	0.82672	63.75	63.485	64.311	0					61	22	4	0	0	0	0.82076	1	7485	7485		56.434	0.92959	1	2488800	+		46066	33422	31924	31975	51477	51477					0.14022528736541062
LPQMIIEP	8	Unmodified	_LPQMIIEP_					0	0	0		ENST00000595961.5_1_19:39976255-39976534:+|nuORF	ENST00000595961.5_1_19:39976255-39976534:+|nuORF	ENST00000595961.5_1_19:39976255-39976534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.7635192871094	2	470.762246	939.50994	0.020001	9.4159E-06	4.033	0.0018986	4.053	0.001908	470.76404929314816	35.842	0.70498	35.629	35.314	36.019	-0.21246					52	19	4	0	0	0	0.56067	1	2765	2765		79.939	0	1	2648600			46067	17427	31925	31976	51478	51478					0.03776497310911964
LPQMPQAAQ	9	Unmodified	_LPQMPQAAQ_					0	0	0			REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27947998046875	2	492.252577	982.490601	0.26661	0.00013124	-0.57927	-0.00028515	-0.31266	-0.00015391	492.2520715127266	41.296	0.20957	41.173	40.98	41.189	-0.12317					6	5	2	0	0	0	0.024294	1	3671	3671		55.504	18.345	1	47863	+		46068	22409	31926	31977	51479	51479					-0.0013445897999417866
LPQQAERKAP	10	Unmodified	_LPQQAERKAP_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.25146484375	2	569.32238	1136.63021	-0.57389	-0.00032673	0.83867	0.00047747	0.26478	0.00015075	569.8245146729921	38.713	0.12205	38.491	38.417	38.539	-0.22149					4	2	2	0	0	0	0.03519	1	3210	3210		16.473	5.6076	1	29240	+		46069	21099	31927	31978	51480	51480					0.06735621628899935
LPQRPLSLQR	10	Unmodified	_LPQRPLSLQR_					0	0	0			REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.2474670410156	3	403.247173	1206.71969	0.67687	0.00027295	-1.2139	-0.00048949	-0.53701	-0.00021655	403.24668819074594	103.44	1.2257	103.31	102.83	104.06	-0.12783					74	29	4	0	0	0	1.118	1	12889	12889		20.03	1.4994	1	1613900	+		46070	29837	31928	31979	51481	51481					0.12459876308253115
LPRAELLKV	9	Unmodified	_LPRAELLKV_					0	0	0			REV__ENSG00000170128|ENST00000304244|GPR25	REV__ENSG00000170128|ENST00000304244|GPR25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.8392944335938	2	519.837134	1037.65972	-0.55875	-0.00029046	1.2517	0.00065066	0.69291	0.0003602	519.8377031345655	69.954	0.47409	69.966	69.751	70.225	0.012421					18	12	2	0	0	0	0.45795	1	8387	8387		62.107	12.666	1	3629600	+		46071	26437	31929	31980	51482	51482					0.1423918564505584
LPRAGGAFL	9	Unmodified	_LPRAGGAFL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3;LAMB3|p.V821G|1|0.38|ENSG00000196878|chr1:209623076-209623076|A/C|missense_variant	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.26678466796875	2	451.266345	900.518136	0.11624	5.2455E-05	0.099056	4.47E-05	0.2153	9.7156E-05	451.2662493923492	54.126	0.59334	54.126	53.835	54.428	0					53	16	4	0	0	0	0.40179	1	5907	5907		65.803	7.9919	1	5241500			46072	9931	31930	31981	51483	51483					0.06389812342570167
LPRAGGEL	8	Unmodified	_LPRAGGEL_					0	0	0			REV__ENSG00000008516|ENST00000336577|MMP25	REV__ENSG00000008516|ENST00000336577|MMP25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.7348327636719	2	406.734877	811.455202	0.064297	2.6152E-05	0.30017	0.00012209	0.36447	0.00014824	406.73486049701273	22.375	0.93793	22.173	21.855	22.793	-0.20199					48	19	4	0	0	0	0.56067	1	767	767		79.939	5.9645	1	918780	+		46073	19883	31931	31982	51484	51484					0.041932465545301056
LPRAGGPLGL	10	Unmodified	_LPRAGGPLGL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MSMS	OPSCC_39_ClassI_Rep-1	1	475.791748046875	2	475.792727	949.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.732	1	57.732	57.232	58.232	0								0	0	0	0.22706	1	6509	6509		84.916	16.129	1				46074	9007	31932	31983	51485	51485					0.09409770405375184
LPRAGGPLGL	10	Unmodified	_LPRAGGPLGL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7953796386719	2	475.792727	949.5709	0.24995	0.00011892	0.15236	7.2492E-05	0.40231	0.00019142	475.79268657455077	57.879	0.80191	57.704	57.383	58.185	-0.1749					36	21	2	0	0	0	0.67706	1	6518	6518		68.787	5.4806	1	2558000			46075	9007	31932	31983	51486	51486					0.09409770405375184
LPRAGGPLGL	10	Unmodified	_LPRAGGPLGL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.7912292480469	2	475.792727	949.5709	-0.31189	-0.0001484	0.37874	0.0001802	0.066851	3.1807E-05	475.79294230121224	57.531	0.7686	57.626	57.32	58.088	0.095306					35	20	2	0	0	0	0.62431	1	6399	6399		74.255	2.9593	1	2348100			46076	9007	31932	31983	51487	51487					0.09409770405375184
LPRAGTSPEP	10	Unmodified	_LPRAGTSPEP_					0	0	0			REV__nc|ENSG00000240021|Q5T0J7-3|TEX35	REV__nc|ENSG00000240021|Q5T0J7-3|TEX35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2531127929688	2	512.774731	1023.53491	0.12365	6.3402E-05	-4.089	-0.0020967	-3.9654	-0.0020333	512.7725164974171	57.35	0.47216	57.148	56.996	57.469	-0.20208					22	12	3	0	0	0	0.03519	1	6241	6241		27.882	4.8398	1	266170	+		46077	37155	31933	31984	51488	51488					0.02408268437852712
LPRAGVGHSR	10	Unmodified	_LPRAGVGHSR_					0	0	0		ENST00000591325.1_1_19:58790629-58791205:+|nuORF	ENST00000591325.1_1_19:58790629-58791205:+|nuORF	ENST00000591325.1_1_19:58790629-58791205:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.78466796875	2	525.301781	1048.58901	-0.6594	-0.00034638	-1.295	-0.00068029	-1.9544	-0.0010267	525.3017866562076	65.226	0.16203	64.991	64.89	65.052	-0.2345					5	3	2	0	0	0	0.03519	1	7447	7447		19.997	6.5427	1	36326			46078	17353	31934	31985	51489	51489					0.06665905380077675
LPRAHLRTV	9	Unmodified	_LPRAHLRTV_					0	0	0		ENST00000367604.6_2_6:143267316-143267355:-|nuORF	ENST00000367604.6_2_6:143267316-143267355:-|nuORF	ENST00000367604.6_2_6:143267316-143267355:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7684936523438	2	531.830175	1061.6458	-0.94884	-0.00050462	0.20391	0.00010844	-0.74493	-0.00039618	531.830152925449	22.917	0.45774	22.917	22.665	23.123	0					12	9	2	0	0	0	0.024506	1	866	866		16.473	9.2798	1	31019			46079	12868	31935	31986	51490	51490					0.11743952936603819
LPRAHLRTV	9	Unmodified	_LPRAHLRTV_					0	0	0		ENST00000367604.6_2_6:143267316-143267355:-|nuORF	ENST00000367604.6_2_6:143267316-143267355:-|nuORF	ENST00000367604.6_2_6:143267316-143267355:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.830175	1061.6458	-0.99206	-0.00052761	0.46014	0.00024471	-0.53192	-0.00028289	531.8301959816907	22.818	0.50932	22.892	22.559	23.068	0.073954	-7.8866E-05	0.00024566	NaN	16.473	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29591			46080	12868	31935	31986							0.11743952936603819
LPRAPLLAS	9	Unmodified	_LPRAPLLAS_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.2951965332031	2	469.295102	936.575651	0.34318	0.00016105	-0.74654	-0.00035035	-0.40336	-0.0001893	469.29474648517817	63.534	1.4587	63.283	62.893	64.352	-0.25141					106	39	4	0	0	0	0.25032	1	7397	7397		82.305	0.064519	1	18985000	+		46081	23506	31936	31987	51491	51491					0.10482654548127357
LPRAPLLAS	9	Unmodified	_LPRAPLLAS_					0	0	0			REV__ENSG00000135063|ENST00000303068|ENTREP1	REV__ENSG00000135063|ENST00000303068|ENTREP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2952880859375	2	469.295102	936.575651	1.9219	0.00090193	-2.3969	-0.0011249	-0.47503	-0.00022293	469.29396151067465	63.28	1.6067	63.335	62.888	64.495	0.054104					109	43	4	0	0	0	0.13494	1	7307	7307		102.77	4.144	1	16387000	+		46082	23506	31936	31987	51492	51492					0.10482654548127357
LPRARNPAAPA	11	Unmodified	_LPRARNPAAPA_					0	0	0		ENST00000525455.5_1_11:62529053-62530037:+|nuORF;ENST00000301788.11_1_11:62529053-62530368:+|nuORF;ENST00000524819.5_1_11:62529062-62529592:+|nuORF	ENST00000525455.5_1_11:62529053-62530037:+|nuORF	ENST00000525455.5_1_11:62529053-62530037:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3306274414062	2	567.330539	1132.64652	-0.10765	-6.1074E-05	-1.2583	-0.00071388	-1.366	-0.00077496	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.0442	1	10812	10812		26.693	1.2427	1	5896300			46083	11939	31937	31988	51493	51493					0.0855074758567298
LPRAVLVDL	9	Unmodified	_LPRAVLVDL_					0	0	0		ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.316162109375	2	498.316035	994.617516	-0.095564	-4.7621E-05	0.067832	3.3802E-05	-0.027732	-1.3819E-05	498.31597281983875	67.034	1.0368	67.034	66.755	67.792	0					61	25	3	0	0	0	0.50848	1	8008	8008		58.782	2.0609	1	5407000			46084	14439	31938	31989	51494	51494					0.11999210236660929
LPRAVLVDL	9	Unmodified	_LPRAVLVDL_					0	0	0		ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.315673828125	2	498.316035	994.617516	-0.24957	-0.00012436	0.11946	5.9531E-05	-0.13011	-6.4834E-05	498.3159611320506	67.4	0.95669	67.112	66.791	67.748	-0.28834					65	23	5	0	0	0	0.50848	1	8036	8036		58.782	5.4305	1	5679900			46085	14439	31938	31989	51495	51495					0.11999210236660929
LPRAVLVDL	9	Unmodified	_LPRAVLVDL_					0	0	0		ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3157653808594	2	498.316035	994.617516	0.051568	2.5697E-05	-0.17377	-8.6593E-05	-0.1222	-6.0896E-05	498.315858433549	67.171	1.2354	67.195	66.812	68.047	0.023903					61	30	3	0	0	0	0.27161	1	7945	7945		79.451	5.4763	1	4980500			46086	14439	31938	31989	51496	51496					0.11999210236660929
LPRAYRRSA	9	Unmodified	_LPRAYRRSA_					0	0	0			REV__ENST00000463554.5_1_2:233635920-233635968:+|nuORF	REV__ENST00000463554.5_1_2:233635920-233635968:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.317432	1088.62031	0.14148	7.7154E-05	-1.5604	-0.00085093	-1.4189	-0.00077377	545.3163921405243	101.52	0.93464	101.39	101.03	101.96	-0.12576					49	22	4	0	0	0	0.89441	1	12624	12624		32.812	0.85756	1	1111300	+		46087	32940	31939	31990	51497	51497					0.07954478414194455
LPRDQNNGL	9	Unmodified	_LPRDQNNGL_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7686767578125	2	513.76998	1025.52541	-0.78202	-0.00040178	-0.61915	-0.0003181	-1.4012	-0.00071988	513.7697995183858	33.385	1.0325	33.385	33.018	34.05	0					77	27	4	0	0	0	0.14181	1	2409	2409		101.25	21.313	1	2196900			46088	4780	31940	31991	51498	51498					0.013665001523349929
LPRDQNNGL	9	Unmodified	_LPRDQNNGL_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7691040039062	2	513.76998	1025.52541	0.10012	5.1441E-05	-1.5119	-0.00077677	-1.4118	-0.00072533	513.7693081864245	33.113	1.0522	33.169	32.838	33.89	0.056572					79	27	4	0	0	0	0.18994	1	2306	2306		90.601	16.346	1	2206800			46089	4780	31940	31991	51499	51499					0.013665001523349929
LPRDQNNGL	9	Unmodified	_LPRDQNNGL_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.76998	1025.52541	-0.74511	-0.00038282	-0.63008	-0.00032372	-1.3752	-0.00070653	513.7698439190939	33.229	0.83806	33.235	32.888	33.726	0.0066223	-0.027983	0.00033407	NaN	101.25	72	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2268200			46090	4780	31940	31991							0.013665001523349929
LPRDRLVL	8	Unmodified	_LPRDRLVL_					0	0	0		nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-13|FGFR1;nc|ENSG00000077782|P11362-10|FGFR1;nc|ENSG00000077782|P11362-12|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-2|FGFR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.3138427734375	2	491.313826	980.613099	-1.7806	-0.00087483	1.3066	0.00064193	-0.47403	-0.0002329	491.3143950730784	29.019	0.65093	28.774	28.491	29.142	-0.24523					48	14	4	0	0	0	0.6248	1	1756	1756		73.975	10.996	1	3257300			46091	18086;18087	31941	31992	51500	51500					0.12201745813740672
LPRELFPW	8	Unmodified	_LPRELFPW_					0	0	0		ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	ENSG00000105398|ENST00000222002|SULT2A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8074951171875	2	529.295102	1056.57565	-1.1632	-0.00061569	3.3018	0.0017476	2.1386	0.001132	529.2955862206079	50.104	0.56922	50.104	49.842	50.411	0					39	16	3	0	0	0	0.027866	1	5189	5189		31.955	5.2619	1	411770			46092	2670	31942	31993	51501	51501					0.04962654548148748
LPREPQLLD	9	Unmodified	_LPREPQLLD_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8048095703125	2	540.806031	1079.59751	-0.45475	-0.00024593	0.57089	0.00030874	0.11614	6.281E-05	540.805997030007	52.816	1.2888	52.669	51.95	53.239	-0.14723					72	33	4	0	0	0	0.75397	1	5675	5675		42.396	0.96952	1	5508100	+		46093	21364	31943	31994	51502	51502					0.060894145060501614
LPREQAQQL	9	Unmodified	_LPREQAQQL_					0	0	0		nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-6|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2958984375	2	541.80128	1081.58801	-0.56078	-0.00030383	-0.42178	-0.00022852	-0.98256	-0.00053235	541.8008307804212	18.932	0.78638	18.81	18.558	19.344	-0.12265					37	15	4	0	0	0	0.80003	1	326	326		39.253	5.3312	1	1111000			46094	18161	31944	31995	51503	51503					0.05047646220509705
LPREYKTK	8	Unmodified	_LPREYKTK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.79248046875	2	517.803291	1033.59203	-0.1887	-9.7708E-05	0.41236	0.00021352	0.22367	0.00011581	517.8034246864153	56.001	0.70975	56.001	55.464	56.174	0					36	19	3	0	0	0	0.027866	1	6129	6129		40.573	18.87	1	332220			46095	6234	31945	31996	51504	51504					0.07657735714201408
LPREYKTK	8	Unmodified	_LPREYKTK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.803291	1033.59203	-0.32006	-0.00016573	0.4208	0.00021789	0.10074	5.2165E-05	517.8035635766871	56.132	0.65794	55.976	55.48	56.138	-0.15601	0.015861	-0.00036591	NaN	40.573	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409240			46096	6234	31945	31996							0.07657735714201408
LPREYKTK	8	Unmodified	_LPREYKTK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.803291	1033.59203	-1.2695	-0.00065734	1.4917	0.00077242	0.22225	0.00011508	517.8040474689428	55.807	0.65431	55.905	55.447	56.101	0.097923	-0.055954	0.00074316	NaN	40.573	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411960			46097	6234	31945	31996							0.07657735714201408
LPRGGSGSVL	10	Unmodified	_LPRGGSGSVL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7715759277344	2	471.771991	941.529429	-0.09875	-4.6587E-05	-0.37077	-0.00017492	-0.46952	-0.00022151	471.7716667330411	40.034	1.7025	39.922	39.603	41.305	-0.11223					90	46	3	0	0	0	0.61732	2	3463	3463;3475		75.043	2.1591	1	13385000			46098	7355	31946	31997	51505;51506	51505					0.05632589646052111
LPRGMQPTEF	10	Unmodified	_LPRGMQPTEF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	588.2976684570312	2	588.297516	1174.58048	-1.7591	-0.0010349	1.7276	0.0010163	-0.031471	-1.8515E-05	588.2984288627621	54.338	0.75052	54.338	54.043	54.794	0					58	21	4	0	0	0	0.20166	2	5939	5926;5939		120.87	35.953	1	4437300			46099	10320	31947	31998	51507;51508	51508					0.00017170628598250914
LPRGMQPTEF	10	Unmodified	_LPRGMQPTEF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	588.2974243164062	2	588.297516	1174.58048	-0.99297	-0.00058416	1.1791	0.00069366	0.18613	0.0001095	588.2981117097752	54.45	0.65897	54.3	54.017	54.676	-0.15036					54	18	4	0	0	0	0.20166	3	5924	5912;5924;5939		120.87	33.114	1	4092900			46100	10320	31947	31998	51509;51510;51511	51510					0.00017170628598250914
LPRGMQPTEF	10	Unmodified	_LPRGMQPTEF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	588.2973022460938	2	588.297516	1174.58048	1.3608	0.00080057	-1.4668	-0.00086289	-0.10593	-6.232E-05	588.296600797635	54.109	0.74923	54.207	53.876	54.626	0.098011					57	21	4	0	0	0	0.29487	2	5825	5813;5825		109.48	13.288	1	4268600			46101	10320	31947	31998	51512;51513	51513					0.00017170628598250914
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_		LPRGM(1)QPTEF		LPRGM(94)QPTEF	0	0	1		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.2951049804688	2	596.294973	1190.57539	-0.66951	-0.00039923	0.33812	0.00020162	-0.33139	-0.0001976	596.2949945582976	43.948	0.66695	43.985	43.743	44.41	0.0369					53	18	4	0	0	0	0.44975	1	4100	4100		93.598	21.72	1	1846400			46102	10320	31947	31999	51514	51514		437			-0.012271332340333174
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_					0	0	1		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	596.294973	1190.57539	-2.3693	-0.0014128	1.774	0.0010578	-0.59522	-0.00035493	596.2958880946098	43.897	1.0439	43.897	43.475	44.519	0	-0.039484	0.00074978	NaN	93.598	57	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1692300			46103	10320	31947	31999				437			-0.012271332340333174
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_					0	0	1		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	596.294973	1190.57539	-1.7459	-0.0010411	1.2165	0.00072541	-0.52933	-0.00031564	596.2956338191119	44.071	0.68432	43.926	43.675	44.359	-0.14471	-0.0096408	8.4923E-05	NaN	93.598	37	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1898700			46104	10320	31947	31999				437			-0.012271332340333174
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.5792236328125	3	407.578923	1219.71494	0.66975	0.00027298	-0.41391	-0.0001687	0.25585	0.00010428	407.578775677104	34.474	1.0318	34.474	34.168	35.2	0					74	26	4	0	0	0	0.70536	2	2580	2580;2595		63.426	22	1	5706400			46105	8410	31948	32000	51515;51516	51515					0.11386992165512311
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	407.5791320800781	3	407.578923	1219.71494	0.49732	0.0002027	-0.33191	-0.00013528	0.16542	6.742E-05	407.57879062652256	34.235	1.05	34.231	33.908	34.958	-0.0045624					80	26	5	0	0	0	0.67481	3	2524	2513;2524;2537		65.278	23.851	1	5283900			46106	8410	31948	32000	51517;51518;51519	51518					0.11386992165512311
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.5792236328125	3	407.578923	1219.71494	0.52512	0.00021403	-0.053695	-2.1885E-05	0.47143	0.00019214	407.57886276266305	34.334	1.7	34.384	34.047	35.747	0.050255					109	43	5	0	0	0	0.84303	1	2491	2491		55.084	11.433	1	4101700			46107	8410	31948	32000	51520	51520					0.11386992165512311
LPRGSSPSV	9	Unmodified	_LPRGSSPSV_					0	0	0		ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2510070800781	2	450.250892	898.48723	-0.39107	-0.00017608	0.46345	0.00020867	0.072374	3.2586E-05	450.2510077305235	33.156	0.98319	33.156	32.679	33.662	0					55	26	3	0	0	0	0.10174	2	2363	2355;2363		110.12	13.929	1	3818500			46108	3701	31949	32001	51521;51522	51522					0.033926142376685675
LPRGSSPSV	9	Unmodified	_LPRGSSPSV_					0	0	0		ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2509765625	2	450.250892	898.48723	-0.48673	-0.00021915	0.57948	0.00026091	0.092744	4.1758E-05	450.2510523171095	33.028	1.021	33.035	32.589	33.61	0.0066261					59	27	3	0	0	0	0.047345	1	2329	2329		129.68	18.034	1	3591800			46109	3701	31949	32001	51523	51523					0.033926142376685675
LPRGSSPSV	9	Unmodified	_LPRGSSPSV_					0	0	0		ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2509765625	2	450.250892	898.48723	0.4059	0.00018276	-0.30134	-0.00013568	0.10455	4.7075E-05	450.2506655179646	32.919	1.0026	32.982	32.465	33.468	0.062885					53	26	3	0	0	0	0.15366	1	2274	2274		98.629	10.875	1	3397300			46110	3701	31949	32001	51524	51524					0.033926142376685675
LPRGSSPSV	9	Unmodified	_LPRGSSPSV_					0	0	0		ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.250892	898.48723	-0.41368	-0.00018626	3.7496	0.0016883	3.3359	0.001502	450.25142724434073	32.854	0.2041	32.688	32.516	32.72	-0.16565	-0.2772	0.0028461	NaN	129.68	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27813			46111	3701	31949	32001							0.033926142376685675
LPRHVTTL	8	Unmodified	_LPRHVTTL_					0	0	0			REV__nc|ENSG00000087495|Q96KR7-3|PHACTR3	REV__nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2537536621094	2	468.784902	935.55525	0.058074	2.7224E-05	-0.49542	-0.00023225	-0.43735	-0.00020502	468.78457209385687	48.849	0.52149	48.849	48.654	49.176	0					27	14	2	0	0	0	0.027866	1	5021	5021		23.042	4.7181	1	649480	+		46112	20802	31950	32002	51525	51525					0.08489483888331506
LPRIFDYS	8	Unmodified	_LPRIFDYS_					0	0	0		USP13-PEX5L|1|fusion;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13-PEX5L|1|fusion	USP13-PEX5L|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3109130859375	2	505.768917	1009.52328	-0.27692	-0.00014006	3.2761	0.0016569	2.9992	0.0015169	505.7705843222887	48.265	0.61193	48.332	48.117	48.729	0.066795					40	16	3	0	0	0	0.027866	1	4826	4826		29.15	0	1	1331000			46113	38135	31951	32003	51526	51526					0.018900714145161146
LPRKAPLN	8	Unmodified	_LPRKAPLN_					0	0	0		ENSG00000121152|ENST00000240423|NCAPH;chr2:96335848-96341675|498|13.47|0.71|4.24|+|ENST00000435975|NCAPH,NCAPH;ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENSG00000121152|ENST00000240423|NCAPH;ENST00000477409.1_1_2:97001567-97024936:+|nuORF	ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.78912353515625	2	454.787444	907.560336	-0.53215	-0.00024201	0.48879	0.0002223	-0.043356	-1.9718E-05	454.7874938401727	25.655	1.1995	25.621	24.992	26.192	-0.034395					73	28	4	0	0	0	0.93274	1	1246	1246		47.916	1.9636	1	1571000			46114	383;15112	31952	32004	51527	51527					0.10285787750922282
LPRKLCPPL	9	Unmodified	_LPRKLCPPL_					0	0	0		ENST00000589179.5_1_12:53590773-53591061:-|nuORF	ENST00000589179.5_1_12:53590773-53591061:-|nuORF	ENST00000589179.5_1_12:53590773-53591061:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2870483398438	2	518.82043	1035.62631	0.49678	0.00025774	-0.18361	-9.5261E-05	0.31317	0.00016248	518.8199578696472	51.01	0.65045	50.898	50.638	51.288	-0.11163					32	16	4	0	0	0	0.024517	1	5257	5257		19.36	6.4008	1	782850			46115	17303	31953	32005	51528	51528					0.10991860601461667
LPRKLFDR	8	Unmodified	_LPRKLFDR_					0	0	0			REV__ENSG00000141429|ENST00000269195|GALNT1	REV__ENSG00000141429|ENST00000269195|GALNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2632446289062	2	522.819276	1043.624	-1.1215	-0.00058636	-0.50706	-0.0002651	-1.6286	-0.00085146	522.8188118419282	53.673	0.5563	53.537	53.281	53.837	-0.13616					53	16	4	0	0	0	0.027866	1	5696	5696		12.959	0.75233	1	1919900	+		46116	24083	31954	32006	51529	51529					0.10393148188040868
LPRKLKMAV	9	Unmodified	_LPRKLKMAV_					0	0	0		ENSG00000169592|ENST00000563197|INO80E	ENSG00000169592|ENST00000563197|INO80E	ENSG00000169592|ENST00000563197|INO80E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2577514648438	2	528.341529	1054.66851	-1.5439	-0.00081571	-4.241	-0.0022407	-5.7849	-0.0030564	528.3381187409312	44.555	0.41051	44.555	44.281	44.691	0					18	11	2	0	0	0	0.024541	1	4265	4265		12.959	1.4482	1	248160			46117	7952	31955	32007	51530	51530					0.14335836009854575
LPRKPVAGA	9	Unmodified	_LPRKPVAGA_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.79217529296875	2	454.787444	907.560336	-0.53215	-0.00024201	0.48879	0.0002223	-0.043356	-1.9718E-05	454.7874938401727	25.655	1.1995	25.621	24.992	26.192	-0.034395					73	28	4	0	0	0	0.43973	1	1223	1223		63.306	7.8021	1	1571000			46118	10157	31956	32008	51531	51531					0.1028578775093365
LPRKRRTL	8	Unmodified	_LPRKRRTL_					0	0	0			REV__ENST00000606584.5_1_13:79980478-79992024:+|nuORF	REV__ENST00000606584.5_1_13:79980478-79992024:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7854614257812	2	520.345992	1038.67743	0.38622	0.00020097	1.8578	0.00096671	2.244	0.0011677	520.3469313276976	78.422	1.074	78.23	77.975	79.049	-0.1921					52	25	3	0	0	0	0.027866	1	9665	9665		18.324	0	1	353870	+		46119	35935	31957	32009	51532	51532					0.15963945690555192
LPRLAFPSR	9	Unmodified	_LPRLAFPSR_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.3202514648438	2	528.819276	1055.624	-0.37916	-0.00020051	-0.39323	-0.00020795	-0.77239	-0.00040846	528.818487726817	82.849	0.9071	82.709	82.303	83.21	-0.14014					36	20	2	0	0	0	0.50848	1	9994	9994		58.782	7.4465	1	440730	+		46120	24611	31958	32010	51533	51533					0.09841148188024818
LPRLGLLAL	9	Unmodified	_LPRLGLLAL_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.3070983886719	2	483.328945	964.643337	-0.84584	-0.00040882	0.88072	0.00042568	0.034886	1.6862E-05	483.32917647483924	81.486	0.73099	81.51	81.126	81.857	0.023903					37	17	3	0	0	0	0.024354	1	10088	10088		47.916	0	1	365760			46121	3417	31959	32011	51534	51534					0.1596010447893832
LPRLGPVAR	9	Unmodified	_LPRLGPVAR_					0	0	0			REV__ENST00000367161.7_1_1:205156906-205180643:-|nuORF	REV__ENST00000367161.7_1_1:205156906-205180643:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2581481933594	2	489.813993	977.613434	-0.17839	-8.7379E-05	-2.9358	-0.001438	-3.1142	-0.0015254	489.8121603998285	105.79	0.35567	105.79	105.54	105.9	0.00015259					19	12	2	0	0	0	0.024506	1	13478	13478		6.3127	0	1	44763	+		46122	31006	31960	32012	51535	51535					0.12373165533608699
LPRLLSTQ	8	Unmodified	_LPRLLSTQ_					0	0	0			REV__ENST00000227752.7_1_11:117870452-117870800:+|nuORF	REV__ENST00000227752.7_1_11:117870452-117870800:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.76922607421875	2	464.284734	926.554916	-0.49799	-0.00023121	-0.57281	-0.00026595	-1.0708	-0.00049715	464.2843191534113	43.786	0.73587	43.681	43.398	44.134	-0.10468					40	19	3	0	0	0	0.027866	1	4052	4052		40.573	18.613	1	1340400	+		46123	29387	31961	32013	51536	51536					0.08870064168456793
LPRLPVPAV	9	Unmodified	_LPRLPVPAV_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A;CPT1A|p.S170L|1|0.11|ENSG00000110090|chr11:68804046-68804046|G/A|missense_variant	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.3135070800781	2	481.313295	960.612037	0.30456	0.00014659	-0.58255	-0.00028039	-0.27799	-0.0001338	481.3128934256052	68.872	1.4508	68.58	67.936	69.387	-0.29266					75	37	3	0	0	0	0.4855	1	8246	8246		60.294	10.269	1	1924200			46124	3022	31962	32014	51537	51537					0.130155314448416
LPRLVKRK	8	Unmodified	_LPRLVKRK_					0	0	0			REV__nc|ENSG00000163517|Q96DB2-2|HDAC11	REV__nc|ENSG00000163517|Q96DB2-2|HDAC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.32379150390625	2	505.353286	1008.69202	-0.42337	-0.00021395	-4.1299	-0.0020871	-4.5533	-0.002301	505.35179832097225	79.284	0.41428	79.284	79.201	79.616	0					11	9	2	0	0	0	0.027866	1	9842	9842		37.028	10.232	1	93698	+		46125	36852	31963	32015	51538	51538					0.18802017838697793
LPRPASDV	8	Unmodified	_LPRPASDV_					0	0	0			REV__nc|ENSG00000173085|Q96H96-3|COQ2	REV__nc|ENSG00000173085|Q96H96-3|COQ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2607421875	2	427.74016	853.465767	0.63628	0.00027216	4.3347	0.0018541	4.971	0.0021263	427.7419321604891	91.078	0.57475	90.939	90.784	91.359	-0.13942					20	13	2	0	0	0	0.027866	1	11170	11170		40.573	0	1	210890	+		46126	26737	31964	32016	51539	51539					0.03317229208948902
LPRPFYMS	8	Unmodified	_LPRPFYMS_					0	0	0		ENST00000354179.8_2_5:176721804-176722098:+|nuORF	ENST00000354179.8_2_5:176721804-176722098:+|nuORF	ENST00000354179.8_2_5:176721804-176722098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.31072998046875	2	505.760038	1009.50552	-0.70903	-0.0003586	-3.2882	-0.001663	-3.9972	-0.0020216	506.2606335506926	48.327	0.13594	48.327	48.277	48.413	0					5	3	2	0	0	0	0.027866	1	4917	4917		23.042	0	1	39395			46127	12618	31965	32017	51540	51540					0.0011503288801577582
LPRPIRNL	8	Unmodified	_LPRPIRNL_					0	0	0		ENST00000560555.1_1_15:101420112-101432306:+|nuORF;ENSG00000184254|ENST00000329841|ALDH1A3	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	ENST00000560555.1_1_15:101420112-101432306:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.25848388671875	2	489.813993	977.613434	0.02665	1.3053E-05	-3.0119	-0.0014753	-2.9853	-0.0014622	489.81236448980684	105.68	0.37654	105.68	105.46	105.83	-0.0013199					20	13	2	0	0	0	0.027866	1	13514	13514		40.573	13.777	1	72513			46128	9321	31966	32018	51541	51541					0.1237316553359733
LPRPLNAK	8	Unmodified	_LPRPLNAK_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7893371582031	2	454.787444	907.560336	-0.25791	-0.00011729	0.14822	6.7409E-05	-0.10969	-4.9886E-05	454.7873306337661	25.549	1.1154	25.549	25.009	26.124	0					78	26	4	0	0	0	0.87148	1	1244	1244		53.351	0	1	1491600			46129	3891	31967	32019	51542	51542					0.1028578775093365
LPRPLNAK	8	Unmodified	_LPRPLNAK_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7893981933594	2	454.787444	907.560336	-0.53215	-0.00024201	0.48879	0.0002223	-0.043356	-1.9718E-05	454.7874938401727	25.655	1.1995	25.621	24.992	26.192	-0.034395					73	28	4	0	0	0	0.845	1	1235	1235		55.504	2.1528	1	1571000			46130	3891	31967	32019	51543	51543					0.1028578775093365
LPRPLNAK	8	Unmodified	_LPRPLNAK_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7918395996094	2	454.787444	907.560336	0.42097	0.00019145	-0.50208	-0.00022834	-0.081109	-3.6887E-05	454.78706134206664	25.521	1.0764	25.601	25.093	26.169	0.08009					68	25	4	0	0	0	0.845	2	1166	1166;1176		55.504	0	1	1706300			46131	3891	31967	32019	51544;51545	51544					0.1028578775093365
LPRPPGKGV	9	Unmodified	_LPRPPGKGV_					0	0	0		ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.7873229980469	2	460.787444	919.560336	-0.32223	-0.00014848	0.28749	0.00013247	-0.034737	-1.6006E-05	460.78741095103703	32.189	1.8448	32.201	30.75	32.594	0.011799					94	45	4	0	0	0	0.67308	1	2195	2195		47.916	0	1	1371100			46132	9590	31968	32020	51546	51546					0.09733787750951706
LPRPPGKGV	9	Unmodified	_LPRPPGKGV_					0	0	0		ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.7875671386719	2	460.787444	919.560336	0.088837	4.0935E-05	-0.079459	-3.6614E-05	0.0093777	4.3211E-06	460.7872503221386	32.026	1.7684	32.088	30.697	32.465	0.062885					99	43	4	0	0	0	0.52323	2	2131	2120;2131		57.811	7.7867	1	1424600			46133	9590	31968	32020	51547;51548	51548					0.09733787750951706
LPRPVSWR	8	Unmodified	_LPRPVSWR_					0	0	0			REV__nc|ENSG00000064205|O76076-2|CCN5	REV__nc|ENSG00000064205|O76076-2|CCN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.31072998046875	2	505.798343	1009.58213	-0.68589	-0.00034692	-1.0018	-0.00050669	-1.6876	-0.00085361	505.7980106546869	48.267	0.47887	48.267	48.003	48.482	0					32	13	3	0	0	0	0.027866	1	4917	4917		34.173	12.213	1	574840	+		46134	36461	31969	32021	51549	51549					0.07772592499509301
LPRQLPLEV	9	Unmodified	_LPRQLPLEV_					0	0	0		ENST00000463750.5_1_12:1025794-1039020:-|nuORF;ENST00000461568.5_1_12:1025523-1036092:-|nuORF;ENST00000488642.6_1_12:1023254-1036092:-|nuORF;ENST00000228345.9_1_12:1022559-1036092:-|nuORF;ENSG00000002016|ENST00000358495|RAD52	ENST00000463750.5_1_12:1025794-1039020:-|nuORF	ENST00000463750.5_1_12:1025794-1039020:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8084106445312	2	532.826766	1063.63898	-0.12926	-6.8872E-05	-2.5427	-0.0013548	-2.672	-0.0014237	532.825362647219	45.807	0.39709	45.71	45.564	45.961	-0.096653					23	10	3	0	0	0	0.024	1	4402	4402		55.504	0	1	883110			46135	725	31970	32022	51550	51550					0.1097059526537123
LPRQPPMSL	9	Unmodified	_LPRQPPMSL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7918701171875	2	519.791869	1037.56919	-0.42968	-0.00022334	-0.078124	-4.0608E-05	-0.5078	-0.00026395	519.791614887558	53.922	1.321	53.922	53.302	54.623	0					95	37	4	0	0	0	0.077175	2	5873	5873;5885		118.74	13.454	1	6477000			46136	8768	31971	32023	51551;51552	51551					0.05190393325119658
LPRQPPMSL	9	Unmodified	_LPRQPPMSL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7923583984375	2	519.791869	1037.56919	-0.29694	-0.00015435	-0.1493	-7.7605E-05	-0.44624	-0.00023195	519.7916094596314	54.027	1.3424	53.88	53.168	54.511	-0.14723					101	37	4	0	0	0	0.067814	2	5865	5852;5865		122.18	37.26	1	5870900			46137	8768	31971	32023	51553;51554	51554					0.05190393325119658
LPRQPPMSL	9	Unmodified	_LPRQPPMSL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7919311523438	2	519.791869	1037.56919	-0.51653	-0.00026849	-0.094988	-4.9374E-05	-0.61151	-0.00031786	519.7916559987822	53.723	1.2627	53.818	53.161	54.424	0.095669					93	35	4	0	0	0	0.077175	2	5768	5768;5778		118.74	27.966	1	6925000			46138	8768	31971	32023	51555;51556	51555					0.05190393325119658
LPRRGTMY	8	Unmodified	_LPRRGTMY_					0	0	0			REV__ENSG00000125731|ENST00000245908|SH2D3A	REV__ENSG00000125731|ENST00000245908|SH2D3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.28692626953125	2	497.268561	992.52257	0.68815	0.0003422	-0.25014	-0.00012439	0.43801	0.00021781	497.26836707164875	36.034	1.3914	35.835	35.542	36.934	-0.19829					68	36	2	0	0	0	0.027866	1	2730	2730		31.955	0	1	696900	+		46139	22836	31972	32024	51557	51557					0.026009534938225443
LPRRGVAG	8	Unmodified	_LPRRGVAG_					0	0	0		ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.25567626953125	2	413.256311	824.49807	1.3303	0.00054975	-0.397	-0.00016406	0.93327	0.00038568	413.2562278249237	96.55	0.78291	96.55	96.231	97.014	-3.0518E-05					36	17	3	0	0	0	1.0133	1	12236	12236		35.201	5.3592	1	297330			46140	11272	31973	32025	51558	51558					0.07880061402613592
LPRRLAAR	8	Unmodified	_LPRRLAAR_					0	0	0			REV__ENSG00000142544|ENST00000421832|CTU1	REV__ENSG00000142544|ENST00000421832|CTU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.76251220703125	2	476.811785	951.609017	1.5151	0.00072243	1.5827	0.00075466	3.0978	0.0014771	476.8120017291442	64.071	0.69227	64.117	63.794	64.486	0.045509					33	18	3	0	0	0	0.027866	1	7459	7459		35.201	0	1	385940	+		46141	24162	31974	32026	51559	51559					0.13127701110693124
LPRRLAIQL	9	Unmodified	_LPRRLAIQL_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;ENST00000466127.1_1_1:226109155-226109632:-|nuORF	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2897338867188	2	540.356025	1078.6975	-0.79675	-0.00043053	-0.49059	-0.00026509	-1.2873	-0.00069562	540.3556914516709	53.91	0.45798	53.762	53.529	53.987	-0.14723					22	12	2	0	0	0	0.024535	1	5834	5834		25.45	0	1	288580			46142	5689	31975	32027	51560	51560					0.16129696630491708
LPRRLIVQ	8	Unmodified	_LPRRLIVQ_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7508544921875	2	497.829643	993.644734	0.42115	0.00020966	-0.78221	-0.00038941	-0.36106	-0.00017974	497.8292978872057	40.376	0.55587	40.376	40.137	40.692	0					23	15	2	0	0	0	0.027866	1	3521	3521		19.36	5.5846	1	238250	+		46143	22073	31976	32028	51561	51561					0.14765738567700737
LPRRNLLL	8	Unmodified	_LPRRNLLL_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7506103515625	2	497.829643	993.644734	0.64032	0.00031877	-0.59174	-0.00029459	0.048582	2.4186E-05	497.82934609532344	40.523	0.42105	40.411	40.243	40.664	-0.11223					19	11	2	0	0	0	0.027866	1	3531	3531		15.636	0	1	161760			46144	10221	31977	32029	51562	51562					0.14765738567689368
LPRRQPCC	8	Unmodified	_LPRRQPCC_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.27978515625	2	486.746939	971.479325	-0.17885	-8.7055E-05	1.9214	0.00093526	1.7426	0.0008482	486.7480487141332	50.832	0.36914	50.683	50.528	50.897	-0.14916					18	10	2	0	0	0	0.027866	1	5341	5341		29.842	10.482	1	196760	+		46145	26872	31978	32030	51563	51563					-0.007555595551252736
LPRRRPRRHPS	11	Unmodified	_LPRRRPRRHPS_					0	0	0		nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.62353515625	3	476.623748	1426.84942	0.62619	0.00029846	-0.39129	-0.0001865	0.2349	0.00011196	476.62357791762025	107.47	0.11802	107.31	107.24	107.36	-0.15772					9	5	2	0	0	0	1.1092	1	13342	13342		8.7993	0	1	1402600			46146	18323	31979	32031	51564	51564					0.1530649043077119
LPRRRPRRHPS	11	Unmodified	_LPRRRPRRHPS_					0	0	0		nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	476.623748	1426.84942	1.966	0.00093706	-1.1362	-0.00054154	0.82985	0.00039552	476.62323754188947	107.48	0.22857	107.48	107.26	107.49	0	0.075137	-0.0014231	NaN	8.7993	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686540			46147	18323	31979	32031							0.1530649043077119
LPRRRPRRHPS	11	Unmodified	_LPRRRPRRHPS_					0	0	0		nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	476.623748	1426.84942	0.54167	0.00025817	-0.67607	-0.00032223	-0.1344	-6.4058E-05	476.6233126559938	107.46	0.10464	107.46	107.37	107.48	-0.003479	0.050106	-0.00076518	NaN	8.7993	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	755800			46148	18323	31979	32031							0.1530649043077119
LPRRRPRRHPS	11	Unmodified	_LPRRRPRRHPS_					0	0	0		nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	476.623748	1426.84942	0.22788	0.00010861	0.79583	0.00037931	1.0237	0.00048792	476.624059409397	107.48	0.10033	107.48	107.4	107.5	0.0028992	0.071613	0.0013394	NaN	8.7993	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479540			46149	18323	31979	32031							0.1530649043077119
LPRRRPRRHPS	11	Unmodified	_LPRRRPRRHPS_					0	0	0		nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	476.623748	1426.84942	0.29251	0.00013942	0.036523	1.7408E-05	0.32903	0.00015682	476.6237606145809	107.49	0.10037	107.37	107.28	107.38	-0.1238	-0.039519	0.00025373	NaN	8.7993	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834990			46150	18323	31979	32031							0.1530649043077119
LPRRRPRRHPS	11	Unmodified	_LPRRRPRRHPS_					0	0	0		nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	nc|ENSG00000138685|P09038|FGF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	476.623748	1426.84942	-1.2466	-0.00059416	0.59888	0.00028544	-0.64772	-0.00030872	476.6240024351879	107.48	0.12003	107.34	107.25	107.37	-0.1346	-0.063816	0.0010578	NaN	8.7993	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1377900			46151	18323	31979	32031							0.1530649043077119
LPRRTRRPL	9	Unmodified	_LPRRTRRPL_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF	REV__ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-3|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.8238525390625	2	582.875448	1163.73634	-1.3829	-0.00080608	4.0405	0.0023551	2.6576	0.0015491	582.8771658968794	78.595	0.41845	78.595	78.323	78.741	0					16	9	2	0	0	0	0.02435	1	9725	9725		42.396	0	1	71688			46152	21048;2133	31980	32032	51565	51565					0.16102421984874127
LPRRTRRPL	9	Unmodified	_LPRRTRRPL_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF	REV__ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-3|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.8219604492188	2	582.875448	1163.73634	-0.57421	-0.00033469	3.2649	0.001903	2.6907	0.0015684	583.3793440402869	78.658	0.41741	78.466	78.257	78.674	-0.19211					16	9	2	0	0	0	0.024405	1	9727	9727		44.117	17.321	1	60667			46153	21048;2133	31980	32032	51566	51566					0.16102421984874127
LPRRTRRPL	9	Unmodified	_LPRRTRRPL_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF	REV__ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-3|HPS4	REV__ENSG00000100099|ENST00000398145|HPS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.8237915039062	2	582.875448	1163.73634	0.090503	5.2752E-05	3.4533	0.0020128	3.5438	0.0020656	582.876780428165	78.629	0.50127	78.645	78.356	78.857	0.015907					18	11	2	0	0	0	0.024405	1	9654	9654		44.117	1.7207	1	113030			46154	21048;2133	31980	32032	51567	51567					0.16102421984874127
LPRSEAIFL	9	Unmodified	_LPRSEAIFL_					0	0	0			REV__PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	REV__PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303955078125	2	523.305667	1044.59678	-0.3005	-0.00015725	-3.5216	-0.0018429	-3.8221	-0.0020001	523.3036719773831	99.834	1.216	99.834	99.358	100.57	0					55	29	3	0	0	0	0.6504	1	12766	12766		49.442	8.6634	1	1346600	+		46155	28648	31981	32033	51568	51568					0.07626619856978323
LPRSEGQAL	9	Unmodified	_LPRSEGQAL_					0	0	0			REV__ENST00000246532.5_2_19:36230484-36230780:-|nuORF	REV__ENST00000246532.5_2_19:36230484-36230780:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78826904296875	2	485.769448	969.524344	0.030321	1.4729E-05	0.025115	1.22E-05	0.055435	2.6929E-05	485.7693896937138	47.06	1.0226	46.907	46.208	47.231	-0.15301					43	27	2	0	0	0	0.022832	1	4694	4694		82.241	0	1	1816700	+		46156	29474	31982	32034	51569	51569					0.03836285783427229
LPRSGASIP	9	Unmodified	_LPRSGASIP_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.26165771484375	2	449.261259	896.507966	-0.50704	-0.00022779	0.17221	7.7369E-05	-0.33482	-0.00015042	449.26128935072717	41.487	0.83688	41.257	40.925	41.761	-0.23029					53	21	3	0	0	0	0.20967	2	3645	3645;3658		87.754	5.4784	1	7148100	+		46157	23910	31983	32035	51570;51571	51570					0.055572046173210765
LPRSGASIP	9	Unmodified	_LPRSGASIP_					0	0	0			REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	449.261259	896.507966	0.10115	4.5441E-05	0.062765	2.8198E-05	0.16391	7.3639E-05	449.2611045981265	41.32	1.0194	41.343	40.97	41.99	0.023006	0.1079	0.00011014	NaN	87.754	101	28	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5774200	+		46158	23910	31983	32035							0.055572046173210765
LPRSIGNLTQL	11	Unmodified	_LPRSIGNLTQL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.3589477539062	2	606.358962	1210.70337	-0.005452	-3.3059E-06	-0.28171	-0.00017081	-0.28716	-0.00017412	606.3587079581847	64.109	0.68777	64.109	63.772	64.46	0					60	18	4	0	0	0	0.017666	2	7545	7532;7545		131.09	37.944	1	1681500			46159	6022	31984	32036	51572;51573	51573					0.10644750351502807
LPRSIGNLTQL	11	Unmodified	_LPRSIGNLTQL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.3590087890625	2	606.358962	1210.70337	-0.72849	-0.00044173	0.32457	0.00019681	-0.40392	-0.00024492	606.3590898361277	64.399	0.66393	64.136	63.791	64.455	-0.2626					53	17	4	0	0	0	0.0038553	1	7545	7545		147.73	51.917	1	1924100			46160	6022	31984	32036	51574	51574					0.10644750351502807
LPRSIGNLTQL	11	Unmodified	_LPRSIGNLTQL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	606.3593139648438	2	606.358962	1210.70337	-0.12132	-7.3566E-05	-0.36059	-0.00021865	-0.48192	-0.00029221	606.3585815200315	64.127	0.84826	64.172	63.794	64.642	0.045502					60	22	4	0	0	0	0.11962	1	7461	7461		107.45	22.294	1	1963400			46161	6022	31984	32036	51575	51575					0.10644750351502807
LPRSIGVTSRI	11	Unmodified	_LPRSIGVTSRI_					0	0	0			REV__ENST00000462715.1_1_1:36602709-36602835:-|nuORF	REV__ENST00000462715.1_1_1:36602709-36602835:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.24725341796875	3	400.247062	1197.71936	-0.044226	-1.7701E-05	0.099454	3.9806E-05	0.055228	2.2105E-05	400.24706216429007	32.856	1.2826	32.862	32.518	33.801	0.0066261					87	34	4	0	0	0	0.90172	1	2305	2305		51.528	0	1	3190500	+		46162	32910	31985	32037	51576	51576					0.1284045658840114
LPRTLEVAL	9	Unmodified	_LPRTLEVAL_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3006591796875	2	506.313492	1010.61243	-0.74408	-0.00037674	2.1372	0.0010821	1.3931	0.00070534	506.3151578181753	32.551	0.33612	32.551	32.379	32.715	0					10	8	2	0	0	0	0.024487	1	2256	2256		31.955	12.851	1	98668			46163	8285	31986	32038	51577	51577					0.1075490637402936
LPRTRPLLD	9	Unmodified	_LPRTRPLLD_					0	0	0			REV__ENST00000437621.6_1_7:1626575-1627631:+|nuORF	REV__ENST00000437621.6_1_7:1626575-1627631:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8055419921875	2	540.82984	1079.64513	-0.51475	-0.00027839	3.9511	0.0021369	3.4364	0.0018585	540.8321272246707	52.607	0.4537	52.699	52.486	52.939	0.091942					17	11	2	0	0	0	0.024466	1	5579	5579		31.53	8.4873	1	112590	+		46164	32482	31987	32039	51578	51578					0.10849113496897189
LPRTTLRPL	9	Unmodified	_LPRTTLRPL_					0	0	0			REV__ENST00000602547.1_1_12:6993848-6993959:+|nuORF	REV__ENST00000602547.1_1_12:6993848-6993959:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8035278320312	2	533.840208	1065.66586	-0.7878	-0.00042056	0.45432	0.00024254	-0.33348	-0.00017802	533.8404280586439	34.099	0.40007	34.099	33.932	34.332	0					17	9	2	0	0	0	0.024405	1	2543	2543		35.618	0	1	91901	+		46165	35880	31988	32040	51579	51579					0.13565703876543012
LPRVAGKLGK	10	Unmodified	_LPRVAGKLGK_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477457.1_1_2:238455116-238462232:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.820556640625	2	519.842751	1037.67095	0.51184	0.00026608	-0.52083	-0.00027075	-0.0089863	-4.6714E-06	519.8425570104488	80.611	0.16721	80.405	80.3	80.467	-0.20633					6	3	2	0	0	0	0.03519	1	9669	9669		14.865	0	1	164850			46166	3475	31989	32041	51580	51580					0.15362007739167893
LPRVQIVDVKS	11	Unmodified	_LPRVQIVDVKS_					0	0	0			REV__ENSG00000054277|ENST00000366554|OPN3	REV__ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.3842163085938	2	627.382437	1252.75032	-0.17413	-0.00010925	-0.46748	-0.00029329	-0.64161	-0.00040254	627.3820106087511	110.71	0.52884	110.59	110.51	111.04	-0.12525					45	19	3	0	0	0	1.018	2	13601	13601;13617		32.812	0	1	5899300	+		46167	20187	31990	32042	51581;51582	51581					0.1340560990265658
LPRVRGSA	8	Unmodified	_LPRVRGSA_					0	0	0		ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2607727050781	2	428.261594	854.508634	0.60688	0.0002599	-0.36221	-0.00015512	0.24467	0.00010478	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	0.99042	1	11152	11152		38.806	1.7777	1	63872000			46168	12989	31991	32043	51583	51583					0.0755604405703707
LPRVVHLF	8	Unmodified	_LPRVVHLF_					0	0	0		ENSG00000278870|ENST00000623849|OR51G1	ENSG00000278870|ENST00000623849|OR51G1	ENSG00000278870|ENST00000623849|OR51G1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7559814453125	2	490.805637	979.596721	-0.76018	-0.0003731	-2.7121	-0.0013311	-3.4723	-0.0017042	490.803339834341	43.567	0.25338	43.422	43.316	43.569	-0.14471					10	6	2	0	0	0	0.027866	1	4063	4063		20.482	2.1574	1	88713			46169	11069	31992	32044	51584	51584					0.10610664647640533
LPSAFEEKDI	10	Unmodified	_LPSAFEEKDI_					0	0	0		GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.7930297851562	2	574.795329	1147.5761	-1.3461	-0.00077373	-2.8405	-0.0016327	-4.1866	-0.0024064	574.7936939051469	31.769	1.0656	31.769	31.428	32.494	0					78	26	5	0	0	0	0.86389	2	2166	2130;2166		56.434	1.6575	1	9584000			46170	17679	31993	32045	51585;51586	51586					0.008219846866722946
LPSAFEEKDI	10	Unmodified	_LPSAFEEKDI_					0	0	0		GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.7931518554688	2	574.795329	1147.5761	-0.24018	-0.00013805	-3.8575	-0.0022173	-4.0977	-0.0023553	574.7931073435153	31.67	1.0356	31.682	31.34	32.376	0.011797					82	25	5	0	0	0	1.0393	1	2140	2140		40.778	2.9666	1	9817200			46171	17679	31993	32045	51587	51587					0.008219846866722946
LPSAFEEKDI	10	Unmodified	_LPSAFEEKDI_					0	0	0		GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	GIPC1|p.A264D|1|0.27|ENSG00000123159|chr19:14478743-14478743|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.793212890625	2	574.795329	1147.5761	-0.77385	-0.00044481	-3.3843	-0.0019453	-4.1581	-0.0023901	574.7934100799879	31.439	0.96495	31.508	31.166	32.131	0.068962					73	23	5	0	0	0	0.88896	1	2036	2036		54.776	5.3348	1	9108800			46172	17679	31993	32045	51588	51588					0.008219846866722946
LPSALFLYS	9	Unmodified	_LPSALFLYS_					0	0	0		GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3108825683594	2	505.781493	1009.54843	-1.0249	-0.00051836	-2.1565	-0.0010907	-3.1814	-0.0016091	505.78015852553017	48.374	0.66164	48.098	47.595	48.257	-0.27598					33	17	3	0	0	0	0.024323	1	4795	4795		53.351	2.016	1	424050			46173	17685	31994	32046	51589	51589					0.044041262170935624
LPSALFLYS	9	Unmodified	_LPSALFLYS_					0	0	0		GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.781493	1009.54843	-0.42833	-0.00021664	-2.7387	-0.0013852	-3.167	-0.0016018	505.77994532965295	48.046	0.3713	47.949	47.705	48.076	-0.097553	-0.039068	-3.3366E-05	NaN	53.351	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343430			46174	17685	31994	32046							0.044041262170935624
LPSALFLYS	9	Unmodified	_LPSALFLYS_					0	0	0		GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	GP5|p.H264Y|1|0.15|ENSG00000178732|chr3:194397493-194397493|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.781493	1009.54843	-0.0087846	-4.4431E-06	-3.3927	-0.0017159	-3.4014	-0.0017204	505.7796018261203	48.103	0.52221	47.916	47.635	48.157	-0.18684	-0.071204	-0.00069487	NaN	53.351	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455360			46175	17685	31994	32046							0.044041262170935624
LPSARPAAATL	11	Unmodified	_LPSARPAAATL_					0	0	0			REV__ENST00000430350.2_2_20:4667109-4679919:+|nuORF	REV__ENST00000430350.2_2_20:4667109-4679919:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2716674804688	2	534.314023	1066.61349	-0.17652	-9.4317E-05	0.11091	5.9263E-05	-0.065604	-3.5053E-05	534.8166715501837	59.794	0.19126	59.594	59.463	59.654	-0.20016					6	4	2	0	0	0	0.02475	1	6797	6797		28.081	0	1	105410	+		46176	32354	31995	32047	51590	51590					0.08285120742925756
LPSAVRLL	8	Unmodified	_LPSAVRLL_					0	0	0		ENST00000299954.13_1_17:65688699-65688948:+|nuORF	ENST00000299954.13_1_17:65688699-65688948:+|nuORF	ENST00000299954.13_1_17:65688699-65688948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7657775878906	2	434.78437	867.554188	-0.042587	-1.8516E-05	3.7702	0.0016392	3.7276	0.0016207	434.78550136200914	54.765	0.14201	54.765	54.689	54.831	0					5	3	2	0	0	0	0.027866	1	6020	6020		45.952	5.3793	1	37212			46177	11893	31996	32048	51591	51591					0.11511269519428424
LPSDLRTISL	10	Unmodified	_LPSDLRTISL_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000413704.5_1_3:9487316-9517772:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.8267822265625	2	557.826963	1113.63937	-0.33613	-0.0001875	0.17453	9.7357E-05	-0.1616	-9.0147E-05	557.8268804485297	67.031	0.61201	67.031	66.714	67.326	0					40	14	4	0	0	0	0.59525	1	7999	7999		77.533	14.227	1	2552300			46178	18490	31997	32049	51592	51592					0.08709970194581729
LPSDLRTISL	10	Unmodified	_LPSDLRTISL_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000413704.5_1_3:9487316-9517772:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3447875976562	2	557.826963	1113.63937	-0.50903	-0.00028395	0.50488	0.00028164	-0.0041495	-2.3147E-06	557.8269377406755	67.373	0.63853	67.085	66.791	67.429	-0.28834					43	15	4	0	0	0	0.03519	1	8013	8013		86.882	4.1311	1	2533800			46179	18490	31997	32049	51593	51593					0.08709970194581729
LPSDLRTISL	10	Unmodified	_LPSDLRTISL_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000413704.5_1_3:9487316-9517772:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.3436889648438	2	557.826963	1113.63937	0.063337	3.5331E-05	0.3538	0.00019736	0.41714	0.00023269	557.8267132707275	67.106	0.57542	67.13	66.855	67.43	0.023911					42	13	4	0	0	0	0.03519	1	7919	7919		74.165	3.3488	1	2170500			46180	18490	31997	32049	51594	51594					0.08709970194581729
LPSEAGMLL	9	Unmodified	_LPSEAGMLL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2681579589844	2	465.751879	929.489204	0.016701	7.7785E-06	-0.12722	-5.9251E-05	-0.11051	-5.1472E-05	465.7519458821796	42.442	0.34041	42.31	42.115	42.455	-0.1322					11	9	2	0	0	0	0.019237	1	3856	3856		79.939	0	1	57089			46181	9763	31998	32050	51595	51595					0.021639069312641368
LPSEFRNL	8	Unmodified	_LPSEFRNL_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.77691650390625	2	488.266542	974.51853	0.20638	0.00010077	1.0135	0.00049487	1.2199	0.00059563	488.2668148927726	61.545	0.49393	61.318	61.118	61.611	-0.22663					20	12	3	0	0	0	0.027866	1	7135	7135		44.117	6.3053	1	355840			46182	7421	31999	32051	51596	51596					0.030251872717599326
LPSEQGLIY	9	Unmodified	_LPSEQGLIY_					0	0	0			REV__ENST00000513426.1_1_5:53156036-53156228:+|nuORF	REV__ENST00000513426.1_1_5:53156036-53156228:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.27386474609375	2	510.274032	1018.53351	-0.27371	-0.00013967	0.047135	2.4052E-05	-0.22658	-0.00011562	510.2740369674799	76.601	1.2387	76.432	75.741	76.98	-0.16854					85	29	5	0	0	0	0.23085	1	9123	9123		84.916	5.2029	1	8301800	+		46183	34155	32000	32052	51597	51597					0.024986343491036678
LPSETKKT	8	Unmodified	_LPSETKKT_					0	0	0		ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-4|WWP2;WWP2|p.D675Efs*8|1|0.13|ENSG00000198373|chr16:69936360-69936360|C/-|frameshift_variant	ENSG00000198373|ENST00000359154|WWP2	ENSG00000198373|ENST00000359154|WWP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.24847412109375	2	452.260925	902.507297	-0.52168	-0.00023594	-2.3771	-0.0010751	-2.8987	-0.001311	452.25938602706805	33.232	0.45455	33.239	33.043	33.498	0.0066261					30	12	4	0	0	0	0.027866	1	2339	2339		82.305	4.9875	1	1119600			46184	10128	32001	32053	51598	51598					0.052143651776077604
LPSFLPFH	8	Unmodified	_LPSFLPFH_					0	0	0		ENST00000442815.1_1_21:44781197-44781521:-|nuORF	ENST00000442815.1_1_21:44781197-44781521:-|nuORF	ENST00000442815.1_1_21:44781197-44781521:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.74566650390625	2	479.263271	956.511988	0.17907	8.5823E-05	-3.4139	-0.0016362	-3.2348	-0.0015503	479.26048775180743	52.835	0.22395	52.835	52.75	52.974	0					6	5	2	0	0	0	0.027866	1	5699	5699		49.211	1.2952	1	23495			46185	14388	32002	32054	51599	51599					0.03199294111027484
LPSGDRVAVSV	11	Unmodified	_LPSGDRVAVSV_					0	0	0		TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant;ENSG00000169871|ENST00000306085|TRIM56	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3088989257812	2	550.308938	1098.60332	-0.23372	-0.00012862	-0.18831	-0.00010363	-0.42203	-0.00023225	550.3087291102707	49.714	0.9702	49.714	49.176	50.146	0					71	26	4	0	0	0	0.11962	2	5151	5151;5163		107.45	55.927	1	4063900			46186	7982	32003	32055	51600;51601	51600					0.05796513017708094
LPSGDRVAVSV	11	Unmodified	_LPSGDRVAVSV_					0	0	0		TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant;ENSG00000169871|ENST00000306085|TRIM56	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3086547851562	2	550.308938	1098.60332	-0.41424	-0.00022796	-0.09056	-4.9836E-05	-0.5048	-0.0002778	550.3088034564119	49.957	1.3676	49.806	49.256	50.623	-0.1512					75	38	3	0	0	0	0.027116	1	5169	5169		128.35	60.854	1	3906700			46187	7982	32003	32055	51602	51602					0.05796513017708094
LPSGDRVAVSV	11	Unmodified	_LPSGDRVAVSV_					0	0	0		TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant;ENSG00000169871|ENST00000306085|TRIM56	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.308349609375	2	550.308938	1098.60332	-1.2527	-0.00068938	0.80511	0.00044306	-0.44762	-0.00024633	550.3092657436582	49.675	1.4104	49.749	49.06	50.47	0.074192					81	39	4	0	0	0	0.036311	2	5083	5072;5083		125.68	58.188	1	3397300			46188	7982	32003	32055	51603;51604	51604					0.05796513017708094
LPSGFRGSRLL	11	Unmodified	_LPSGFRGSRLL_					0	0	0			REV__ENST00000269973.9_1_19:44439159-44439258:-|nuORF	REV__ENST00000269973.9_1_19:44439159-44439258:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.5718688964844	3	401.571657	1201.69314	0.49211	0.00019762	0.058388	2.3447E-05	0.55049	0.00022106	401.5715603293036	33.39	1.0448	33.159	32.67	33.714	-0.23107					80	25	5	0	0	0	0.98082	1	2400	2400		41.08	0	1	1803600	+		46189	29794	32004	32056	51605	51605					0.1003618741694936
LPSGKFPR	8	Unmodified	_LPSGKFPR_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	ENSG00000018625|ENST00000361216|ATP1A2	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2669677734375	2	451.266345	900.518136	0.11624	5.2455E-05	0.099056	4.47E-05	0.2153	9.7156E-05	451.2662493923492	54.126	0.59334	54.126	53.835	54.428	0					53	16	4	0	0	0	0.77775	1	5921	5921		60.972	3.5193	1	5241500			46190	943	32005	32057	51606	51606					0.06389812342570167
LPSGLIALV	9	Unmodified	_LPSGLIALV_					0	0	0		ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	ENST00000606070.1_1_6:108279748-108280261:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7879333496094	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	0.90698	1	3565	3565		31.955	2.1133	1	35892000			46191	17561	32006	32058	51607	51607					0.11308733942314575
LPSGPLHCFP	10	Unmodified	_LPSGPLHCFP_					0	0	0		ENST00000263280.10_1_19:47222986-47223193:-|nuORF	ENST00000263280.10_1_19:47222986-47223193:-|nuORF	ENST00000263280.10_1_19:47222986-47223193:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2435913085938	2	534.27077	1066.52699	-0.3914	-0.00020911	-1.7418	-0.00093061	-2.1332	-0.0011397	534.7699236743656	56.539	0.31526	56.314	56.149	56.464	-0.22479					10	7	2	0	0	0	0.03519	1	6094	6094		37.159	0	1	71103			46192	11527	32007	32059	51608	51608					-0.0036158208329197805
LPSGSSSLR	9	Unmodified	_LPSGSSSLR_					0	0	0		ENST00000582006.5_2_19:40842245-40854424:-|nuORF;ENST00000392035.6_2_19:40842245-40854239:-|nuORF	ENST00000582006.5_2_19:40842245-40854424:-|nuORF	ENST00000582006.5_2_19:40842245-40854424:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.24761962890625	2	452.248349	902.482145	-0.19035	-8.6084E-05	-1.4678	-0.00066383	-1.6582	-0.00074992	452.24784923559713	33.402	1.5722	33.402	33.018	34.59	0					127	41	5	0	0	0	0.23085	1	2411	2411		84.916	1.6283	1	96955000			46193	13406	32008	32060	51609	51609					0.0270031037505305
LPSGSSSLR	9	Unmodified	_LPSGSSSLR_					0	0	0		ENST00000582006.5_2_19:40842245-40854424:-|nuORF;ENST00000392035.6_2_19:40842245-40854239:-|nuORF	ENST00000582006.5_2_19:40842245-40854424:-|nuORF	ENST00000582006.5_2_19:40842245-40854424:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2476501464844	2	452.248349	902.482145	-0.50016	-0.0002262	-1.1867	-0.0005367	-1.6869	-0.0007629	452.24797314140966	33.232	1.5758	33.239	32.888	34.463	0.0066223					137	41	6	0	0	0	0.31037	1	2395	2395		74.255	0.28031	1	95624000			46194	13406	32008	32060	51610	51610					0.0270031037505305
LPSGSSSLR	9	Unmodified	_LPSGSSSLR_					0	0	0		ENST00000582006.5_2_19:40842245-40854424:-|nuORF;ENST00000392035.6_2_19:40842245-40854239:-|nuORF	ENST00000582006.5_2_19:40842245-40854424:-|nuORF	ENST00000582006.5_2_19:40842245-40854424:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.24786376953125	2	452.248349	902.482145	0.62819	0.0002841	-2.2392	-0.0010127	-1.611	-0.00072859	452.24750550484015	33.123	1.8028	33.18	32.721	34.524	0.056572					145	46	5	0	0	0	0.16468	2	2344	2332;2344		96.19	2.184	1	88437000			46195	13406	32008	32060	51611;51612	51612					0.0270031037505305
LPSHVGVQGE	10	Unmodified	_LPSHVGVQGE_					0	0	0		ENST00000329047.12_1_17:75315660-75315828:+|nuORF	ENST00000329047.12_1_17:75315660-75315828:+|nuORF	ENST00000329047.12_1_17:75315660-75315828:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2875061035156	2	511.766906	1021.51926	0.16236	8.3093E-05	4.4689	0.002287	4.6313	0.0023701	511.769052638315	71.729	1.0982	71.523	71.183	72.281	-0.20613					45	26	3	0	0	0	0.03519	1	8380	8380		51.193	3.2771	1	722430			46196	12314	32009	32061	51613	51613					0.009359819208157205
LPSIDCFFHN	10	Unmodified	_LPSIDCFFHN_					0	0	0			REV__ENSG00000186440|ENST00000641540|OR6P1	REV__ENSG00000186440|ENST00000641540|OR6P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.8005981445312	2	596.776416	1191.53828	-0.44619	-0.00026628	-3.2473	-0.0019379	-3.6935	-0.0022042	596.7743144736792	78.594	0.89529	78.339	78.084	78.979	-0.25471					54	20	5	0	0	0	0.03519	1	9436	9436		20.947	0	1	463990	+		46197	27856	32010	32062	51614	51614					-0.04982804779797334
LPSIHVEQT	9	Unmodified	_LPSIHVEQT_					0	0	0		nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2	nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.28228759765625	2	512.277106	1022.53966	-0.1124	-5.7578E-05	4.03	0.0020645	3.9176	0.0020069	512.2793100981137	61.635	0.33067	61.421	61.293	61.624	-0.21375					10	7	2	0	0	0	0.024523	1	6891	6891		29.15	0	1	249250			46198	3072	32011	32063	51615	51615					0.029291525806115715
LPSIRNPT	8	Unmodified	_LPSIRNPT_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.2616882324219	2	449.261259	896.507966	0.369	0.00016578	-0.18924	-8.5018E-05	0.17976	8.0759E-05	449.26097614386697	41.319	1.1088	41.196	40.725	41.834	-0.12317					110	30	6	0	0	0	0.845	1	3699	3699		55.504	5.4797	1	5645000			46199	7371	32012	32064	51616	51616					0.055572046173210765
LPSKKEVE	8	Unmodified	_LPSKKEVE_					0	0	0		ENST00000469419.1_1_1:242015609-242020665:+|nuORF;chr1:241849027-241849109|478|10.35|0.38|4.77|+|ENST00000450748|EXO1,EXO1;nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1	ENST00000469419.1_1_1:242015609-242020665:+|nuORF	ENST00000469419.1_1_1:242015609-242020665:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2684326171875	2	465.26875	928.522947	-0.65659	-0.00030549	-0.26597	-0.00012375	-0.92257	-0.00042924	465.2683655144227	38.722	0.9763	38.749	38.162	39.138	0.027275					74	26	5	0	0	0	0.47665	1	3199	3199		87.754	0	1	5214600			46200	280	32013	32065	51617	51617					0.05582651694658125
LPSKLQKGIDI	11	Unmodified	_LPSKLQKGIDI_					0	0	0			REV__ENST00000497403.5_1_2:10101229-10104576:+|nuORF	REV__ENST00000497403.5_1_2:10101229-10104576:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	606.3697509765625	2	606.371538	1210.72852	-0.35407	-0.0002147	-3.0199	-0.0018312	-3.374	-0.0020459	606.3695669215261	92.775	3.053	92.652	91.457	94.51	-0.12241					189	71	4	0	0	0	1.0183	1	11490	11490		32.751	9.2278	1	650040	+		46201	33853	32014	32066	51618	51618					0.13158805154080255
LPSKPSSTL	9	Unmodified	_LPSKPSSTL_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2685241699219	2	465.26875	928.522947	-1.0222	-0.00047559	0.33421	0.0001555	-0.68797	-0.00032009	465.26867354600824	38.536	0.6688	38.536	38.199	38.868	0					48	17	4	0	0	0	0.053401	2	3243	3243;3256		127.46	19.374	1	5687200			46202	2163	32015	32067	51619;51620	51619					0.05582651694669494
LPSKPSSTL	9	Unmodified	_LPSKPSSTL_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.268798828125	2	465.26875	928.522947	-0.47284	-0.00022	-0.42554	-0.00019799	-0.89839	-0.00041799	465.26828459591565	38.566	0.97694	38.483	37.883	38.86	-0.082516					69	26	5	0	0	0	0.020687	3	3236	3214;3224;3236		148.99	40.899	1	5655800			46203	2163	32015	32067	51621;51622;51623	51623					0.05582651694669494
LPSKPSSTL	9	Unmodified	_LPSKPSSTL_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.26873779296875	2	465.26875	928.522947	-0.65659	-0.00030549	-0.26597	-0.00012375	-0.92257	-0.00042924	465.2683655144227	38.722	0.9763	38.749	38.162	39.138	0.027275					74	26	5	0	0	0	0.077175	3	3211	3211;3222;3235		118.74	16.231	1	5214600			46204	2163	32015	32067	51624;51625;51626	51624					0.05582651694669494
LPSLIAGQPG	10	Unmodified	_LPSLIAGQPG_					0	0	0		ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.32891845703125	2	476.776742	951.538931	1.2466	0.00059433	-1.3126	-0.00062584	-0.066078	-3.1504E-05	476.77621690894625	78.181	0.61532	77.989	77.723	78.339	-0.1921					31	14	4	0	0	0	0.03519	1	9677	9677		47.657	1.6851	1	185810			46205	10017	32016	32068	51627	51627					0.061223579315765164
LPSLISSRIYV	11	Unmodified	_LPSLISSRIYV_					0	0	0		nc|ENSG00000143416|Q13228-4|SELENBP1;nc|ENSG00000143416|Q13228-2|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;ENST00000492643.5_1_1:151339689-151341653:-|nuORF;ENST00000455839.5_1_1:151339298-151341653:-|nuORF;SELENBP1|p.A184Sfs*7|1|0.03|ENSG00000143416|chr1:151366810-151366837|GTACCAGAAGTCATAGCCCAACGGTGCA/-|frameshift_variant;ENST00000474352.5_1_1:151338696-151341653:-|nuORF	nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000474352.5_1_1:151338696-151341653:-|nuORF	nc|ENSG00000143416|Q13228-4|SELENBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	625.3680419921875	2	624.371538	1246.72852	0.76731	0.00047909	-2.8784	-0.0017972	-2.1111	-0.0013181	624.3696625691769	100.04	0.73159	99.903	99.637	100.37	-0.13364					37	21	2	0	0	0	0.024752	1	12433	12433		40.778	17.255	1	1257500			46206	18345;15030	32017	32069	51628	51628					0.11502805154077578
LPSLISSRIYV	11	Unmodified	_LPSLISSRIYV_					0	0	0		nc|ENSG00000143416|Q13228-4|SELENBP1;nc|ENSG00000143416|Q13228-2|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;ENST00000492643.5_1_1:151339689-151341653:-|nuORF;ENST00000455839.5_1_1:151339298-151341653:-|nuORF;SELENBP1|p.A184Sfs*7|1|0.03|ENSG00000143416|chr1:151366810-151366837|GTACCAGAAGTCATAGCCCAACGGTGCA/-|frameshift_variant;ENST00000474352.5_1_1:151338696-151341653:-|nuORF	nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000474352.5_1_1:151338696-151341653:-|nuORF	nc|ENSG00000143416|Q13228-4|SELENBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	625.36669921875	2	624.371538	1246.72852	0.04378	2.7335E-05	-1.6451	-0.0010272	-1.6014	-0.00099984	624.3702234487362	100.18	0.5573	100.01	99.726	100.28	-0.17088					35	18	2	0	0	0	0.024747	1	12413	12413		31.53	3.6476	1	1796800			46207	18345;15030	32017	32069	51629	51629					0.11502805154077578
LPSLLDKKYG	10	Unmodified	_LPSLLDKKYG_					0	0	0			REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297729492188	2	567.331882	1132.64921	-0.25341	-0.00014377	-3.2747	-0.0018579	-3.5282	-0.0020016	567.3299706706163	102.52	0.73519	102.52	102.24	102.97	0.0073471					42	17	4	0	0	0	1.1088	1	13113	13113		31.53	7.0106	1	1033600	+		46208	33636	32018	32070	51630	51630					0.0881915819995811
LPSMEVDI	8	Unmodified	_LPSMEVDI_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2474670410156	2	452.228236	902.44192	-0.47789	-0.00021611	2.5708	0.0011626	2.0929	0.00094646	452.2294802119105	33.298	0.31113	33.305	33.223	33.534	0.0066261					14	8	2	0	0	0	0.027866	1	2383	2383		83.287	8.7706	1	333420			46209	9453	32019	32071	51631	51631					-0.013203723397509748
LPSNYNFEI	9	Unmodified	_LPSNYNFEI_					0	0	0		ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;ENST00000576129.5_1_17:1936818-1940251:+|nuORF;nc|ENSG00000108963|Q9BZG8-5|DPH1	ENSG00000108963|ENST00000263083|DPH1	ENSG00000108963|ENST00000263083|DPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.76904296875	2	548.769114	1095.52368	-1.0932	-0.0005999	1.0214	0.00056051	-0.071763	-3.9381E-05	548.7694810927653	83.707	0.94366	83.616	83.385	84.328	-0.090454					51	21	4	0	0	0	0.32811	1	10458	10458		71.877	4.9155	1	1562600			46210	2953	32020	32072	51632	51632					-0.02026553656287433
LPSQHSLQE	9	Unmodified	_LPSQHSLQE_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2;nc|ENSG00000182158|Q70SY1-2|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.8211669921875	2	519.764363	1037.51417	0.52253	0.00027159	-2.2831	-0.0011867	-1.7606	-0.00091508	519.7630478591997	80.795	0.11907	80.589	80.508	80.627	-0.20632					4	2	2	0	0	0	0.024506	1	9705	9705		30.504	6.3009	1	43216			46211	9105	32021	32073	51633	51633					-0.0030832194179311045
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7740478515625	2	472.7742	943.533846	1.8092	0.00085535	-1.0483	-0.00049561	0.76091	0.00035974	472.77355325497723	37.012	0.39328	37.012	36.764	37.158	0					30	9	4	0	0	0	0.19099	2	2991	2978;2991		90.37	8.7443	1	2630700			46212	6791	32022	32074	51634;51635	51635					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.77447509765625	2	472.7742	943.533846	0.4935	0.00023331	0.14595	6.9003E-05	0.63945	0.00030232	472.77407939396244	36.872	0.4665	36.809	36.548	37.014	-0.063385					32	11	4	0	0	0	0.16638	1	2945	2945		95.815	18.498	1	2372700			46213	6791	32022	32074	51636	51636					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	OPSCC_39_ClassI_Rep-3	3	472.7743835449219	2	472.7742	943.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.932	1	36.97	36.47	37.47	0.038044								0	0	0	0.084717	1	2917	2917		95.815	13.51	1				46214	6791	32022	32074	51637	51637					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MSMS	OPSCC_39_ClassI_Rep-3	3	472.7743835449219	2	472.7742	943.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.016	1	37.048	36.548	37.548	0.032269								0	0	0	0.14369	1	2930	2930		82.75	3.2995	1				46215	6791	32022	32074	51638	51638					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.7746887207031	2	472.7742	943.533846	0.5353	0.00025307	-0.38762	-0.00018325	0.14768	6.9819E-05	472.7739078898835	37.024	0.69183	36.831	36.537	37.229	-0.193					45	17	4	0	0	0	0.091713	3	2953	2941;2953;2965		113.41	33.346	1	3594200			46216	6791	32022	32074	51639;51640;51641	51640					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.7741394042969	2	472.7742	943.533846	-0.57856	-0.00027353	0.63905	0.00030213	0.060491	2.8599E-05	472.77438879800445	37.086	0.78366	36.866	36.607	37.39	-0.2195					48	19	4	0	0	0	0.15366	3	2963	2939;2950;2963		98.629	16.364	1	3700300			46217	6791	32022	32074	51642;51643;51644	51644					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.7745666503906	2	472.7742	943.533846	0.37695	0.00017821	-0.23073	-0.00010908	0.14622	6.9128E-05	472.7739860666446	37.035	0.90826	36.826	36.525	37.434	-0.2092					50	22	4	0	0	0	0.057894	3	2933	2922;2933;2946		125.81	38.804	1	3528200			46218	6791	32022	32074	51645;51646;51647	51646					0.059820540689429436
LPSRALEP	8	Unmodified	_LPSRALEP_					0	0	0			REV__ENST00000531791.1_1_11:65149384-65149630:-|nuORF	REV__ENST00000531791.1_1_11:65149384-65149630:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.75579833984375	2	441.75581	881.497067	-0.02305	-1.0183E-05	0.094904	4.1924E-05	0.071853	3.1741E-05	441.7556761748724	45.15	0.58377	45.194	44.894	45.478	0.04388					50	16	4	0	0	0	0.62178	1	4310	4310		74.255	7.8258	1	2359500	+		46219	34564	32023	32075	51648	51648					0.05157802243036258
LPSRDDATP	9	Unmodified	_LPSRDDATP_					0	0	0		IL4R-RBBP6|2|fusion;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;IL4R-RBBP6|3|fusion;ENSG00000122257|ENST00000319715|RBBP6	IL4R-RBBP6|2|fusion	IL4R-RBBP6|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2612609863281	2	486.243264	970.471974	-0.555	-0.00026987	-1.5116	-0.00073501	-2.0666	-0.0010049	486.2430349236393	46.19	0.40981	46.242	45.998	46.408	0.051395					14	11	2	0	0	0	0.024261	1	4482	4482		64.207	13.015	1	90990			46220	3917	32024	32076	51649	51649					-0.014442973502127643
LPSREIET	8	Unmodified	_LPSREIET_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.79718017578125	2	472.756007	943.497461	0.27416	0.00012961	3.8052	0.0017989	4.0794	0.0019286	472.7578689922393	85.94	0.37946	85.895	85.697	86.076	-0.045097					13	8	2	0	0	0	0.027866	1	10727	10727		37.159	8.9048	1	46085	+		46221	23878	32025	32077	51650	51650					0.023451771722420744
LPSRHAAA	8	Unmodified	_LPSRHAAA_					0	0	0			REV__ENST00000521369.2_1_8:107282449-107284274:+|nuORF	REV__ENST00000521369.2_1_8:107282449-107284274:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.2308044433594	2	411.732669	821.450785	0.081515	3.3562E-05	2.8695	0.0011815	2.951	0.001215	411.7325186466261	27.027	0.44547	27.014	26.869	27.314	-0.012983					14	11	2	0	0	0	0.027866	1	1471	1471		14.664	0.88877	1	57363	+		46222	34314	32026	32078	51651	51651					0.03291782131600485
LPSRHLLF	8	Unmodified	_LPSRHLLF_					0	0	0		ENST00000491491.1_1_13:77900653-77900983:-|nuORF	ENST00000491491.1_1_13:77900653-77900983:-|nuORF	ENST00000491491.1_1_13:77900653-77900983:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7963562011719	2	491.795269	981.575986	-0.20623	-0.00010142	1.4377	0.00070706	1.2315	0.00060564	491.7957748473887	47.704	1.5509	47.704	46.623	48.174	0					133	44	4	0	0	0	1.0133	1	4833	4833		35.201	6.9464	1	6134900			46223	15461	32027	32079	51652	51652					0.08446074267988024
LPSRIVTAMG	10	Unmodified	_LPSRIVTAMG_					0	0	0			REV__ENSG00000104369|ENST00000342232|JPH1	REV__ENSG00000104369|ENST00000342232|JPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7720336914062	2	522.797152	1043.57975	-0.21356	-0.00011165	1.3166	0.00068831	1.103	0.00057666	522.7976932375477	72.405	0.91812	72.129	71.664	72.582	-0.2769					32	21	2	0	0	0	0.03519	1	8504	8504		35.618	0	1	197750	+		46224	21440	32028	32080	51653	51653					0.05970375979518394
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8318176269531	2	498.831852	995.649151	-1.2519	-0.00062447	1.0172	0.00050739	-0.23469	-0.00011707	498.8322291047563	44.504	1.1648	44.36	43.883	45.048	-0.14471					93	33	4	0	0	0	0.34489	2	4235	4235;4247		69.628	16.024	1	3773400			46225	4312	32029	32081	51654;51655	51654					0.15115202990614307
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.83251953125	2	498.831852	995.649151	-0.23693	-0.00011819	0.16653	8.3073E-05	-0.070399	-3.5117E-05	498.8318162347858	44.37	0.96066	44.407	43.998	44.959	0.0369					79	27	4	0	0	0	0.45795	1	4177	4177		62.107	1.7038	1	3923100			46226	4312	32029	32081	51656	51656					0.15115202990614307
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8323059082031	2	498.831852	995.649151	-0.94356	-0.00047068	-0.16957	-8.4588E-05	-1.1131	-0.00055527	498.8317684352171	44.435	1.0845	44.33	44.03	45.115	-0.10468					80	28	4	0	0	0	0.32811	3	4168	4144;4168;4182		71.877	8.5712	1	12242000			46227	4312	32029	32081	51657;51658;51659	51658					0.15115202990614307
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.8310852050781	2	498.831852	995.649151	-0.83179	-0.00041492	-0.1641	-8.1859E-05	-0.99589	-0.00049678	498.8317813398732	44.597	1.3214	44.353	44.045	45.367	-0.2444					88	35	5	0	0	0	0.28753	2	4173	4173;4185		77.318	23.966	1	12336000			46228	4312	32029	32081	51660;51661	51660					0.15115202990614307
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.831787109375	2	498.831852	995.649151	-1.2666	-0.00063182	0.22998	0.00011472	-1.0366	-0.0005171	498.83196788635445	44.558	1.0747	44.347	44.014	45.089	-0.21109					79	28	4	0	0	0	0.48817	1	4143	4143		60.118	10.907	1	12668000			46229	4312	32029	32081	51662	51662					0.15115202990614307
LPSRKNSPVPV	11	Unmodified	_LPSRKNSPVPV_					0	0	0			REV__nc|ENSG00000065989|P27815-6|PDE4A	REV__nc|ENSG00000065989|P27815-6|PDE4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8567504882812	2	597.35368	1192.69281	-0.68039	-0.00040643	2.0382	0.0012175	1.3578	0.00081107	597.3540221839667	103.66	1.264	103.66	103.14	104.4	0.0031357					78	31	5	0	0	0	1.0344	1	13261	13261		29.17	2.4771	1	534480	+		46230	20325	32030	32082	51663	51663					0.10416767697074647
LPSRLSHVQ	9	Unmodified	_LPSRLSHVQ_					0	0	0			REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.79833984375	2	518.79854	1035.58253	-1.3939	-0.00072316	1.0855	0.00056315	-0.30843	-0.00016001	518.7988768627044	30.846	1.4461	30.846	30.343	31.789	0					92	34	6	0	0	0	0.2508	1	2005	2005		82.241	13.454	1	3886000	+		46231	31940	32031	32083	51664	51664					0.06615967428683689
LPSRLSHVQ	9	Unmodified	_LPSRLSHVQ_					0	0	0			REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	518.79854	1035.58253	-0.91098	-0.00047262	0.32672	0.0001695	-0.58427	-0.00030312	518.7986309815509	30.612	1.1942	30.686	30.378	31.572	0.074314	-0.073522	-0.00010758	NaN	82.241	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4010300	+		46232	31940	32031	32083							0.06615967428683689
LPSRLSHVQ	9	Unmodified	_LPSRLSHVQ_					0	0	0			REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.79854	1035.58253	-0.033271	-1.7261E-05	-0.81894	-0.00042487	-0.85221	-0.00044213	518.7978944021556	30.855	0.37504	30.703	30.553	30.928	-0.15231	-0.05679	-0.0012963	NaN	82.241	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61250	+		46233	31940	32031	32083							0.06615967428683689
LPSSAEVDTC	10	Unmodified	_LPSSAEVDTC_					0	0	0		ENST00000375747.5_1_9:93564254-93606283:+|nuORF	ENST00000375747.5_1_9:93564254-93606283:+|nuORF	ENST00000375747.5_1_9:93564254-93606283:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7640380859375	2	511.228965	1020.44338	-0.36778	-0.00018802	-4.2049	-0.0021497	-4.5727	-0.0023377	511.22665081618084	25.992	0.52832	25.822	25.457	25.985	-0.17078					28	14	3	0	0	0	0.03519	1	1253	1253		51.335	12.083	1	252750			46234	13167	32032	32084	51665	51665					-0.06602783041648763
LPSSCKRL	8	Unmodified	_LPSSCKRL_					0	0	0			REV__ENST00000417688.5_1_22:41253121-41266139:+|nuORF	REV__ENST00000417688.5_1_22:41253121-41266139:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2423400878906	2	452.257662	902.500772	-0.089729	-4.0581E-05	-1.2843	-0.00058086	-1.3741	-0.00062144	452.2572205728976	54.093	0.32775	53.848	53.775	54.103	-0.2453					16	10	3	0	0	0	0.027866	1	5742	5742		42.474	14.22	1	630710	+		46235	32099	32033	32085	51666	51666					0.045621487452422116
LPSSEVCQKMY	11	Unmodified	_LPSSEVCQKMY_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	642.8017578125	2	642.801774	1283.58899	-0.24043	-0.00015455	0.81675	0.00052501	0.57632	0.00037046	642.8022300845415	36.787	0.83057	36.571	36.286	37.117	-0.21661					59	20	4	0	0	0	0.98625	1	2923	2923		23.523	0	1	2089100	+		46236	26900	32034	32086	51667	51667					-0.041456435171085104
LPSSGRSSL	9	Unmodified	_LPSSGRSSL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.24755859375	2	452.248349	902.482145	-0.19035	-8.6084E-05	-1.4678	-0.00066383	-1.6582	-0.00074992	452.24784923559713	33.402	1.5722	33.402	33.018	34.59	0					127	41	5	0	0	0	0.15388	3	2423	2387;2399;2423		98.582	5.7379	1	96955000			46237	6241	32035	32087	51668;51669;51670	51670					0.027003103750416813
LPSSGRSSL	9	Unmodified	_LPSSGRSSL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2476501464844	2	452.248349	902.482145	-0.50016	-0.0002262	-1.1867	-0.0005367	-1.6869	-0.0007629	452.24797314140966	33.232	1.5758	33.239	32.888	34.463	0.0066223					137	41	6	0	0	0	0.22902	1	2359	2359		85.161	8.3867	1	95624000			46238	6241	32035	32087	51671	51671					0.027003103750416813
LPSSGRSSL	9	Unmodified	_LPSSGRSSL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2489013671875	2	452.248349	902.482145	0.62819	0.0002841	-2.2392	-0.0010127	-1.611	-0.00072859	452.24750550484015	33.123	1.8028	33.18	32.721	34.524	0.056572					145	46	5	0	0	0	0.2101	4	2370	2284;2296;2320;2370		87.696	10.922	1	88437000			46239	6241	32035	32087	51672;51673;51674;51675	51675					0.027003103750416813
LPSSHKEGCP	10	Unmodified	_LPSSHKEGCP_					0	0	0			REV__ENST00000515454.5_1_5:115350123-115359090:+|nuORF	REV__ENST00000515454.5_1_5:115350123-115359090:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.8237915039062	2	527.752941	1053.49133	0.37493	0.00019787	2.1676	0.0011439	2.5425	0.0013418	527.7547881263407	68.551	0.18345	68.57	68.427	68.61	0.018913					7	4	2	0	0	0	0.03519	1	8142	8142		34.173	5.9183	1	63401	+		46240	34200	32036	32088	51676	51676					-0.03327664330936386
LPSSLSSFS	9	Unmodified	_LPSSLSSFS_					0	0	0			REV__ENST00000406775.6_2_7:69064374-69064902:+|nuORF	REV__ENST00000406775.6_2_7:69064374-69064902:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	462.737283	923.460012	-0.47354	-0.00021913	1.4689	0.0006797	0.99532	0.00046057	462.73757286192006	23.407	0.53153	23.346	23.026	23.557	-0.060862					19	12	3	0	0	0	0.024	1	878	878		55.504	7.5886	1	58071	+		46241	31927	32037	32089	51677	51677					-0.004779140933692361
LPSSQREVL	9	Unmodified	_LPSSQREVL_					0	0	0		ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.79052734375	2	514.790381	1027.56621	-0.091069	-4.6882E-05	-0.28268	-0.00014552	-0.37375	-0.0001924	514.790167746454	41.275	1.2068	41.275	40.981	42.187	0					85	34	5	0	0	0	0.062622	4	3694	3694;3705;3717;3730		124.08	39.165	1	6632700			46242	14589	32038	32090	51678;51679;51680;51681	51678					0.05352841471949432
LPSSQREVL	9	Unmodified	_LPSSQREVL_					0	0	0		ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7901611328125	2	514.790381	1027.56621	-0.048853	-2.5149E-05	-0.21145	-0.00010885	-0.2603	-0.000134	514.7902006253424	41.455	1.2439	41.332	41.016	42.26	-0.12317					92	35	5	0	0	0	0.094442	2	3717	3717;3730		112.41	22.041	1	6259800			46243	14589	32038	32090	51682;51683	51682					0.05352841471949432
LPSSQREVL	9	Unmodified	_LPSSQREVL_					0	0	0		ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	ENST00000455895.6_1_1:32852491-32860037:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7900390625	2	514.790381	1027.56621	-0.40462	-0.00020829	0.10625	5.4698E-05	-0.29837	-0.0001536	514.7903382042136	41.454	0.87456	41.477	41.147	42.021	0.023003					75	24	4	0	0	0	0.062622	4	3685	3662;3672;3685;3703		124.08	25.451	1	6935400			46244	14589	32038	32090	51684;51685;51686;51687	51686					0.05352841471949432
LPSSRGSLS	9	Unmodified	_LPSSRGSLS_					0	0	0		ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.24749755859375	2	452.248349	902.482145	-0.19035	-8.6084E-05	-1.4678	-0.00066383	-1.6582	-0.00074992	452.24784923559713	33.402	1.5722	33.402	33.018	34.59	0					127	41	5	0	0	0	0.16468	1	2435	2435		96.19	0.37527	1	96955000			46245	12409	32039	32091	51688	51688					0.027003103750644186
LPSSRGSLS	9	Unmodified	_LPSSRGSLS_					0	0	0		ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2480163574219	2	452.248349	902.482145	-0.50016	-0.0002262	-1.1867	-0.0005367	-1.6869	-0.0007629	452.24797314140966	33.232	1.5758	33.239	32.888	34.463	0.0066223					137	41	6	0	0	0	0.14024	2	2347	2347;2420		101.6	4.3219	1	95624000			46246	12409	32039	32091	51689;51690	51689					0.027003103750644186
LPSSSKER	8	Unmodified	_LPSSSKER_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.24847412109375	2	452.248349	902.482145	-0.50016	-0.0002262	-1.1867	-0.0005367	-1.6869	-0.0007629	452.24797314140966	33.232	1.5758	33.239	32.888	34.463	0.0066223					137	41	6	0	0	0	0.42327	1	2339	2339		94.006	0	1	95624000	+		46247	25024	32040	32092	51691	51691					0.0270031037505305
LPSSSKER	8	Unmodified	_LPSSSKER_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2486877441406	2	452.248349	902.482145	0.62819	0.0002841	-2.2392	-0.0010127	-1.611	-0.00072859	452.24750550484015	33.123	1.8028	33.18	32.721	34.524	0.056572					145	46	5	0	0	0	0.6248	1	2384	2384		73.975	0	1	88437000	+		46248	25024	32040	32092	51692	51692					0.0270031037505305
LPSSTNRHR	9	Unmodified	_LPSSTNRHR_					0	0	0			REV__ENST00000487621.5_1_7:80476611-80548165:-|nuORF	REV__ENST00000487621.5_1_7:80476611-80548165:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2716674804688	2	534.288871	1066.56319	0.66802	0.00035692	1.4637	0.00078205	2.1318	0.001139	534.2896189599624	59.525	0.54887	59.325	59.028	59.577	-0.20016					25	14	2	0	0	0	0.024447	1	6797	6797		32.812	0	1	590560	+		46249	33614	32041	32093	51693	51693					0.03257011137793597
LPSSYEAHS	9	Unmodified	_LPSSYEAHS_					0	0	0			REV__ENST00000261254.7_1_12:4410147-4410483:+|nuORF	REV__ENST00000261254.7_1_12:4410147-4410483:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7757568359375	2	495.729989	989.445425	-0.15702	-7.7841E-05	0.18323	9.0831E-05	0.026204	1.299E-05	495.7298634198675	59.947	0.70789	59.747	59.463	60.17	-0.20016					38	18	3	0	0	0	0.024436	1	6899	6899		16.473	0	1	391410	+		46250	29613	32042	32094	51694	51694					-0.04971986241525883
LPSTADPSH	9	Unmodified	_LPSTADPSH_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	462.724707	923.43486	-0.44957	-0.00020803	-1.447	-0.00066956	-1.8966	-0.00087759	462.7244864497305	23.319	0.53153	23.258	23.026	23.557	-0.06086					17	12	2	0	0	0	0.023355	1	878	878		45.952	0	1	116480			46251	9825	32043	32095	51695	51695					-0.029919688959580526
LPSTRLGTL	9	Unmodified	_LPSTRLGTL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2900695800781	2	479.290017	956.565481	0.18178	8.7125E-05	-0.34899	-0.00016727	-0.16721	-8.014E-05	479.289654776321	52.847	0.91108	52.847	52.391	53.302	0					53	23	3	0	0	0	0.062622	2	5668	5668;5679		124.08	41.84	1	2986000			46252	9965	32044	32096	51696;51697	51696					0.08546046822914377
LPSTRLGTL	9	Unmodified	_LPSTRLGTL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2903747558594	2	479.290017	956.565481	0.19454	9.3241E-05	-0.27562	-0.0001321	-0.081078	-3.886E-05	479.2897552242535	52.886	0.75603	52.739	52.447	53.203	-0.14724					49	19	4	0	0	0	0.16638	1	5668	5668		95.815	10.456	1	2874200			46253	9965	32044	32096	51698	51698					0.08546046822914377
LPSTRLGTL	9	Unmodified	_LPSTRLGTL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2897033691406	2	479.290017	956.565481	0.20736	9.9384E-05	-0.55362	-0.00026535	-0.34627	-0.00016596	479.2896565513567	52.638	0.74634	52.73	52.445	53.191	0.091938					52	19	4	0	0	0	0.053401	2	5574	5574;5587		127.46	34.266	1	3149400			46254	9965	32044	32096	51699;51700	51699					0.08546046822914377
LPSVLVEV	8	Unmodified	_LPSVLVEV_					0	0	0		ENST00000222553.7_1_7:105894868-105894907:-|nuORF	ENST00000222553.7_1_7:105894868-105894907:-|nuORF	ENST00000222553.7_1_7:105894868-105894907:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2611389160156	2	428.262936	854.51132	-0.27209	-0.00011653	-2.4672	-0.0010566	-2.7393	-0.0011731	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0239	1	11171	11171		33.516	5.2613	1	68116000			46255	11188	32045	32097	51701	51701					0.07824454671322201
LPSVPTVTK	9	Unmodified	_LPSVPTVTK_					0	0	0			REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7480773925781	2	471.286943	940.559333	-0.91921	-0.00043321	0.95673	0.0004509	0.037525	1.7685E-05	471.28718410940695	45.652	0.80531	45.449	45.161	45.967	-0.20226					52	22	3	0	0	0	0.024427	1	4303	4303		34.173	13.226	1	1376900	+		46256	23176	32046	32098	51702	51702					0.08667528591388418
LPSVRTEP	8	Unmodified	_LPSVRTEP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2812805175781	2	449.753267	897.491981	-0.12517	-5.6294E-05	0.48075	0.00021622	0.35558	0.00015992	449.7533192425808	50.529	0.53849	50.529	50.307	50.845	0					28	15	3	0	0	0	0.027866	1	5347	5347		37.159	6.6555	1	438440	+		46257	28394	32047	32099	51703	51703					0.039134983804160584
LPSVRTEP	8	Unmodified	_LPSVRTEP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2815246582031	2	449.753267	897.491981	0.01033	4.6461E-06	0.3385	0.00015224	0.34883	0.00015689	449.7532706783765	50.459	0.50286	50.54	50.276	50.779	0.080994					26	14	2	0	0	0	0.027866	1	5251	5251		29.15	0	1	559070	+		46258	28394	32047	32099	51704	51704					0.039134983804160584
LPSVRTEP	8	Unmodified	_LPSVRTEP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.28167724609375	2	449.753267	897.491981	-0.87738	-0.0003946	0.67218	0.00030232	-0.2052	-9.2288E-05	449.753214843546	51.246	0.32519	51.333	51.153	51.478	0.087009					12	8	2	0	0	0	0.027866	1	5334	5334		45.952	15.448	1	54070	+		46259	28394	32047	32099	51705	51705					0.039134983804160584
LPSWIKTL	8	Unmodified	_LPSWIKTL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000511439.5_1_3:133368770-133375581:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.28973388671875	2	479.292028	956.569503	0.19454	9.3241E-05	-4.4722	-0.0021435	-4.2776	-0.0020502	479.2897552242535	52.886	0.75603	52.739	52.447	53.203	-0.14724					49	19	4	0	0	0	0.50239	1	5657	5657		85.359	0.19866	1	2874200			46260	7142	32048	32100	51706	51706					0.08948136316621458
LPSWWQRR	8	Unmodified	_LPSWWQRR_					0	0	0			REV__ENST00000493829.5_1_2:85866356-85866404:+|nuORF	REV__ENST00000493829.5_1_2:85866356-85866404:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8404541015625	2	564.8067	1127.59885	0.0025146	1.4202E-06	-2.8605	-0.0016156	-2.858	-0.0016142	564.8076417554798	58.396	1.0885	58.396	57.946	59.035	0					81	29	4	0	0	0	0.027866	1	6556	6556		29.842	0.67148	1	567280	+		46261	33774	32049	32101	51707	51707					0.04015093385464752
LPTDRNSSI	9	Unmodified	_LPTDRNSSI_					0	0	0			REV__ENST00000490738.5_1_1:6931897-6932053:+|nuORF	REV__ENST00000490738.5_1_1:6931897-6932053:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7644958496094	2	501.764363	1001.51417	-0.36921	-0.00018526	0.12912	6.4789E-05	-0.24009	-0.00012047	501.7643257679951	31.619	1.064	31.631	30.999	32.063	0.011797					47	25	3	0	0	0	0.50848	1	2123	2123		58.782	0.97068	1	1917800	+		46262	33710	32050	32102	51708	51708					0.013476780581868297
LPTEAQLLIS	10	Unmodified	_LPTEAQLLIS_					0	0	0		ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.271728515625	2	542.816064	1083.61758	-0.37166	-0.00020175	1.9329	0.0010492	1.5613	0.00084748	542.8167348849812	55.632	0.4548	55.416	55.143	55.598	-0.21607					17	12	2	0	0	0	0.03519	1	5939	5939		19.997	0	1	141750			46263	2698	32051	32103	51709	51709					0.07911165445989354
LPTERFTQ	8	Unmodified	_LPTERFTQ_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2656555175781	2	496.263999	990.513445	-0.24536	-0.00012176	2.8086	0.0013938	2.5632	0.001272	496.26541624758113	37.364	3.0166	37.396	36.127	39.143	0.032269					163	82	2	0	0	0	0.59392	1	2993	2993		76.847	1.8033	1	8318800			46264	9198	32052	32104	51710	51710					0.01780883409139733
LPTGFQICN	9	Unmodified	_LPTGFQICN_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.26544189453125	2	496.747127	991.479702	0.13396	6.6543E-05	3.1846	0.001582	3.3186	0.0016485	496.7498536389591	37.278	0.37631	37.31	37.074	37.45	0.032269					13	9	2	0	0	0	0.024344	1	2981	2981		64.207	12.872	1	45021	+		46265	26900	32053	32105	51711	51711					-0.016378613542769926
LPTINRLEV	9	Unmodified	_LPTINRLEV_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.8142700195312	2	527.816399	1053.61824	-1.6583	-0.00087525	0.5804	0.00030634	-1.0779	-0.00056891	527.8165664588033	62.353	0.81612	62.353	62.08	62.896	0					42	23	2	0	0	0	0.33245	1	7274	7274		71.296	4.8664	1	4048600			46266	7887	32054	32106	51712	51712					0.09358004885712035
LPTITAFAF	9	Unmodified	_LPTITAFAF_					0	0	0			REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF	REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.2635498046875	2	490.776211	979.537869	-1.3191	-0.0006474	-4.2679	-0.0020946	-5.587	-0.002742	490.7739507814715	28.259	0.56395	28.014	27.842	28.406	-0.24524					30	13	4	0	0	0	0.024487	1	1621	1621		17.365	0	1	851850	+		46267	20566	32055	32107	51713	51713					0.047281435626587154
LPTKERLV	8	Unmodified	_LPTKERLV_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.30029296875	2	478.300384	954.586216	0.17272	8.2611E-05	-0.43338	-0.00020729	-0.26066	-0.00012468	478.30008272055136	33.334	0.60352	33.103	32.752	33.356	-0.23107					45	14	4	0	0	0	0.34196	2	2375	2375;2388		105.27	8.5853	1	3806000			46268	4281	32056	32108	51714;51715	51714					0.10710637202566886
LPTKERLV	8	Unmodified	_LPTKERLV_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.30029296875	2	478.300384	954.586216	-0.70208	-0.0003358	0.3795	0.00018152	-0.32258	-0.00015429	478.30047083245205	33.303	0.56231	33.137	32.839	33.401	-0.16565					43	13	4	0	0	0	0.65272	1	2335	2335		71.378	5.5747	1	4460400			46269	4281	32056	32108	51716	51716					0.10710637202566886
LPTKSNWF	8	Unmodified	_LPTKSNWF_					0	0	0			REV__ENST00000564415.5_1_16:70551626-70553612:-|nuORF	REV__ENST00000564415.5_1_16:70551626-70553612:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2867736816406	2	496.763635	991.512717	-0.031973	-1.5883E-05	3.4147	0.0016963	3.3827	0.0016804	496.7635643767563	35.998	2.0787	35.781	35.43	37.509	-0.21661					95	54	3	0	0	0	0.027866	1	2754	2754		85.359	37.444	1	1022900	+		46270	35245	32057	32109	51717	51717					0.01662088760087954
LPTLSRLL	8	Unmodified	_LPTLSRLL_					0	0	0			REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7976989746094	2	456.797478	911.580402	-0.88522	-0.00040436	0.65588	0.0002996	-0.22934	-0.00010476	456.79772240899496	28.4	1.1198	28.155	27.718	28.838	-0.24524					69	26	5	0	0	0	0.42327	2	1648	1648;1660		94.006	6.2521	1	5730900	+		46271	29362	32058	32110	51718;51719	51718					0.12107538690884212
LPTMLTVAR	9	Unmodified	_LPTMLTVAR_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.3085021972656	2	501.294245	1000.57394	-0.15308	-7.674E-05	-0.9313	-0.00046685	-1.0844	-0.0005436	501.2939402571366	33.312	0.5621	33.081	32.752	33.314	-0.23107					16	13	2	0	0	0	0.024523	1	2330	2330		29.15	14.485	1	100430	+		46272	27439	32059	32111	51720	51720					0.07367277467869826
LPTMLTVAR	9	Unmodified	_LPTMLTVAR_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.294245	1000.57394	-1.1436	-0.0005733	0.29555	0.00014816	-0.84809	-0.00042514	501.7961488140938	33.324	0.39986	33.158	32.879	33.278	-0.16565	0.038433	0.00080383	NaN	35.618	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85391	+		46273	27439	32059	32111							0.07367277467869826
LPTQFLFLL	9	Unmodified	_LPTQFLFLL_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2981567382812	2	546.328611	1090.64267	-1.1322	-0.00061853	-2.523	-0.0013784	-3.6552	-0.0019969	546.3271137122681	55.737	1.0516	55.581	55.244	56.295	-0.15656					66	27	4	0	0	0	0.02435	1	5964	5964		60.972	20.399	1	2166200			46274	920	32060	32112	51721	51721					0.10097265039235026
LPTQQYAKSLP	11	Unmodified	_LPTQQYAKSLP_					0	0	0		nc|ENSG00000204673|Q96B36-2|AKT1S1;ENSG00000204673|ENST00000344175|AKT1S1;nc|ENSG00000204673|Q96B36-3|AKT1S1	nc|ENSG00000204673|Q96B36-2|AKT1S1	nc|ENSG00000204673|Q96B36-2|AKT1S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.89501953125	3	415.899439	1244.67649	-0.55705	-0.00023168	-2.9668	-0.0012339	-3.5239	-0.0014656	415.89749538976776	30.411	0.21036	30.167	30.035	30.245	-0.24415					6	4	2	0	0	0	0.024734	1	1940	1940		27.644	3.4121	1	19527			46275	10367	32061	32113	51722	51722					0.06393641740328349
LPTREALCF	9	Carbamidomethyl (C)	_LPTREALC(Carbamidomethyl (C))F_	LPTREALC(1)F		LPTREALC(70)F		0	1	0			REV__ENST00000290573.6_1_2:75118054-75118234:+|nuORF	REV__ENST00000290573.6_1_2:75118054-75118234:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.786376953125	2	553.786784	1105.55902	-0.018893	-1.0463E-05	-0.45259	-0.00025064	-0.47148	-0.0002611	553.7864617835799	55.903	1.1313	55.687	55.336	56.468	-0.21607					79	29	4	0	0	0	0.34489	1	6042	6042		69.628	9.5094	1	13590000	+		46276	29935	32062	32114	51723	51723	392				0.010457855998765808
LPTRMQDL	8	Oxidation (M)	_LPTRM(Oxidation (M))QDL_		LPTRM(1)QDL		LPTRM(96)QDL	0	0	1		ENST00000595051.1_1_19:41313788-41314119:+|nuORF	ENST00000595051.1_1_19:41313788-41314119:+|nuORF	ENST00000595051.1_1_19:41313788-41314119:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2879638671875	2	495.257859	988.501166	0.39215	0.00019422	-3.7845	-0.0018743	-3.3924	-0.0016801	495.25566223600003	51	0.61351	50.889	50.675	51.288	-0.11163					31	15	3	0	0	0	0.027866	1	5246	5246		96.19	13.885	1	282810			46277	17417	32063	32115	51724	51724		553			0.006455236744500326
LPTRPRRL	8	Unmodified	_LPTRPRRL_					0	0	0			REV__ENST00000370355.2_1_10:102107139-102107944:+|nuORF	REV__ENST00000370355.2_1_10:102107139-102107944:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.8246765136719	2	504.824892	1007.63523	-0.28963	-0.00014621	0.084671	4.2744E-05	-0.20496	-0.00010347	504.8248839020787	17.595	0.64752	17.389	17.166	17.813	-0.20669					30	12	4	0	0	0	0.93274	1	189	189		47.916	1.9636	1	1023700	+		46278	31124	32064	32116	51725	51725					0.13171970282178336
LPTRSCIN	8	Unmodified	_LPTRSCIN_					0	0	0			REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2488098144531	2	452.23947	902.464386	-0.14285	-6.4603E-05	-0.52597	-0.00023786	-0.66882	-0.00030247	452.239026922203	33.61	0.85156	33.617	33.534	34.386	0.0066261					24	21	2	0	0	0	0.027866	1	2434	2434		57.811	0	1	292450	+		46279	36808	32065	32117	51726	51726					0.009252718485299738
LPTRTTPDP	9	Unmodified	_LPTRTTPDP_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3249206542969	2	499.269281	996.52401	1.2775	0.0006378	-2.1624	-0.0010796	-0.88491	-0.00044181	499.2684309345329	63.16	0.73883	63.214	62.888	63.627	0.054104					48	19	3	0	0	0	0.023817	1	7363	7363		42.396	1.618	1	1194900			46280	945	32066	32118	51727	51727					0.02560866063549838
LPTSGRMAP	9	Unmodified	_LPTSGRMAP_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.73138427734375	2	465.247295	928.480036	0.50125	0.00023321	-3.8017	-0.0017687	-3.3005	-0.0015355	465.2452111670878	40.432	0.57394	40.32	40.055	40.629	-0.11223					31	15	3	0	0	0	0.024397	1	3509	3509		39.253	7.723	1	873090	+		46281	28441	32067	32119	51728	51728					0.012935583655803384
LPTSGRMAP	9	Unmodified	_LPTSGRMAP_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.247295	928.480036	-0.026167	-1.2174E-05	-3.5528	-0.0016529	-3.579	-0.0016651	465.2454256589977	40.331	0.48808	40.331	40.099	40.587	0	-0.078868	7.1291E-05	NaN	24.519	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1102300	+		46282	28441	32067	32119							0.012935583655803384
LPTTEFLSKNL	11	Unmodified	_LPTTEFLSKNL_					0	0	0			REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7396545410156	3	421.571211	1261.6918	-0.41426	-0.00017464	1.4989	0.00063189	1.0846	0.00045725	421.5716582054595	23.029	0.22929	23.029	22.894	23.123	0					7	4	2	0	0	0	0.02473	1	861	861		33.039	0	1	16738	+		46283	25531	32068	32120	51729	51729					0.07142508537504
LPTTRAPV	8	Unmodified	_LPTTRAPV_					0	0	0			REV__ENST00000378598.4_1_1:1849323-1850689:-|nuORF	REV__ENST00000378598.4_1_1:1849323-1850689:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.7561950683594	2	427.758352	853.502152	0.06996	2.9926E-05	-0.089386	-3.8235E-05	-0.019425	-8.3094E-06	427.7582931903384	41.226	1.5359	41.09	40.488	42.024	-0.13553					95	40	4	0	0	0	0.59392	1	3666	3666		76.847	5.4687	1	10095000	+		46284	31412	32069	32121	51730	51730					0.06954106105649771
LPTTRAPV	8	Unmodified	_LPTTRAPV_					0	0	0			REV__ENST00000378598.4_1_1:1849323-1850689:-|nuORF	REV__ENST00000378598.4_1_1:1849323-1850689:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.7559509277344	2	427.758352	853.502152	0.014503	6.2037E-06	-0.0059436	-2.5424E-06	0.0085592	3.6613E-06	427.758352713995	41.442	1.7356	41.214	40.581	42.316	-0.2278					96	45	3	0	0	0	0.71833	1	3684	3684		65.803	0	1	9305500	+		46285	31412	32069	32121	51731	51731					0.06954106105649771
LPTVILDN	8	Unmodified	_LPTVILDN_					0	0	0		APBA2|p.A598D|1|0.15|ENSG00000034053|chr15:29106695-29106695|C/A|missense_variant	APBA2|p.A598D|1|0.15|ENSG00000034053|chr15:29106695-29106695|C/A|missense_variant	APBA2|p.A598D|1|0.15|ENSG00000034053|chr15:29106695-29106695|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.7697448730469	2	442.758018	883.501483	-0.80394	-0.00035595	-1.376	-0.00060923	-2.1799	-0.00096518	442.7572294185692	20.325	0.62597	20.325	20.078	20.704	0					23	12	3	0	0	0	0.027866	1	528	528		30.504	6.3009	1	25332			46286	104	32070	32122	51732	51732					0.05507266665949828
LPTVRAEPKRF	11	Unmodified	_LPTVRAEPKRF_					0	0	0			REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	REV__ENST00000495198.6_1_5:64023893-64064425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.24700927734375	3	438.594461	1312.76155	0.041632	1.826E-05	-3.1161	-0.0013667	-3.0745	-0.0013485	438.5932048028676	26.804	0.33539	26.804	26.615	26.951	0					11	7	2	0	0	0	0.024734	1	1410	1410		41.08	23.913	1	28326	+		46287	33798	32071	32123	51733	51733					0.11768431996779327
LPTWNVSIV	9	Unmodified	_LPTWNVSIV_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.771240234375	2	514.792392	1027.57023	-0.82485	-0.00042463	-3.392	-0.0017462	-4.2169	-0.0021708	514.7904128762949	43.132	0.72578	43.132	42.895	43.621	0					44	19	3	0	0	0	0.023635	1	4039	4039		66.429	0	1	1056600	+		46288	20332	32072	32124	51734	51734					0.05754930965645144
LPVARGSDLLP	11	Unmodified	_LPVARGSDLLP_					0	0	0		ENST00000519269.1_1_5:171484250-171488167:-|nuORF	ENST00000519269.1_1_5:171484250-171488167:-|nuORF	ENST00000519269.1_1_5:171484250-171488167:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3109741210938	2	569.334956	1136.65536	-0.29112	-0.00016575	-0.5539	-0.00031535	-0.84502	-0.0004811	569.335458826225	31.296	0.33522	31.143	31.006	31.342	-0.15231					11	8	2	0	0	0	0.024747	1	2034	2034		31.53	18.076	1	127320			46289	15946	32073	32125	51735	51735					0.09249676431477383
LPVARKGAV	9	Unmodified	_LPVARKGAV_					0	0	0		ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2	ENSG00000064651|ENST00000262461|SLC12A2	ENSG00000064651|ENST00000262461|SLC12A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2583923339844	2	455.795269	909.575986	0.14167	6.4572E-05	0.30403	0.00013857	0.44569	0.00020315	455.7951239442464	32.047	0.62899	32.047	31.789	32.418	0					29	15	3	0	0	0	0.024386	1	2190	2190		12.207	0	1	556070			46290	1278	32074	32126	51736	51736					0.11758074267993379
LPVCHLCG	8	Unmodified	_LPVCHLCG_					0	0	0		ENST00000525715.5_1_11:1248569-1249984:+|nuORF	ENST00000525715.5_1_11:1248569-1249984:+|nuORF	ENST00000525715.5_1_11:1248569-1249984:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.88275146484375	2	421.206584	840.398615	1.1195	0.00047152	0.014288	6.0183E-06	1.1337	0.00047754	421.20651645812876	17.946	0.19901	17.792	17.657	17.856	-0.1545					6	3	2	0	0	0	0.027866	1	235	235		10.185	0	1	37154			46291	16099	32075	32127	51737	51737					-0.027968405980118405
LPVCSNLLIP	10	Unmodified	_LPVCSNLLIP_					0	0	0		ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000495141.5_1_3:23848730-23929256:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.8114013671875	2	534.809728	1067.6049	-0.75705	-0.00040488	4.0442	0.0021629	3.2872	0.001758	534.8117284219766	32.258	0.74344	32.101	31.861	32.605	-0.15772					39	17	4	0	0	0	0.85955	1	2189	2189		56.721	0	1	1094800			46292	15542	32076	32128	51738	51738					0.07380430782109215
LPVDPRGKV	9	Unmodified	_LPVDPRGKV_					0	0	0		ENST00000598519.1_1_19:55988093-55992570:+|nuORF	ENST00000598519.1_1_19:55988093-55992570:+|nuORF	ENST00000598519.1_1_19:55988093-55992570:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.75543212890625	2	490.798009	979.581465	-0.66477	-0.00032627	-0.60509	-0.00029698	-1.2699	-0.00062324	490.7975401385556	43.384	0.10739	43.384	43.296	43.404	0					4	2	2	0	0	0	0.024457	1	4057	4057		29.15	15.696	1	117710			46293	17473	32077	32129	51739	51739					0.09085753059810031
LPVELKQL	8	Unmodified	_LPVELKQL_					0	0	0		nc|ENSG00000165383|Q8N456-2|LRRC18;ENSG00000165383|ENST00000374160|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2955322265625	2	470.29731	938.580068	0.42949	0.00020199	-3.8487	-0.00181	-3.4192	-0.001608	470.2956050534098	18.752	1.227	18.621	18.352	19.579	-0.13147					58	24	4	0	0	0	1.0338	1	302	302		31.955	0	1	4297100			46294	7408	32078	32130	51740	51740					0.10832118971029558
LPVFNSVELV	10	Unmodified	_LPVFNSVELV_					0	0	0		ENSG00000203740|ENST00000439373|NTMT2	ENSG00000203740|ENST00000439373|NTMT2	ENSG00000203740|ENST00000439373|NTMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8173217773438	2	558.818607	1115.62266	-1.134	-0.0006337	-1.8972	-0.0010602	-3.0312	-0.0016939	558.8174941932286	37.956	0.58662	37.737	37.463	38.049	-0.21848					40	16	3	0	0	0	1.0142	1	3073	3073		44.117	2.6902	1	1690200			46295	10278	32079	32131	51741	51741					0.06947469308602194
LPVGAPMLL	9	Unmodified	_LPVGAPMLL_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2584533691406	2	455.775157	909.53576	0.063886	2.9118E-05	3.2356	0.0014747	3.2995	0.0015038	455.7768937642771	32.42	0.49001	32.483	32.2	32.69	0.062885					28	12	3	0	0	0	0.024289	1	2225	2225		29.842	0	1	687400	+		46296	22118	32080	32132	51742	51742					0.07737391553212092
LPVHVRRGL	9	Unmodified	_LPVHVRRGL_					0	0	0			REV__ENST00000296658.3_1_5:10290886-10307876:-|nuORF	REV__ENST00000296658.3_1_5:10290886-10307876:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2955322265625	2	523.832717	1045.65088	-0.9505	-0.0004979	-0.19832	-0.00010389	-1.1488	-0.00060179	523.8321423869368	44.489	0.32991	44.269	44.176	44.506	-0.21939					11	8	2	0	0	0	0.024517	1	4176	4176		26.796	0	1	76577	+		46297	30001	32081	32133	51743	51743					0.1298825679921265
LPVKYPQDK	9	Unmodified	_LPVKYPQDK_					0	0	0			REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	REV__nc|ENSG00000168619|Q9Y3Q7-2|ADAM18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3025512695312	2	544.310949	1086.60735	-1.0911	-0.00059391	1.0949	0.00059594	0.0037452	2.0386E-06	544.311401986138	65.338	0.40615	65.087	64.823	65.229	-0.25112					16	9	2	0	0	0	0.024427	1	7422	7422		34.173	23.307	1	1172000	+		46298	26278	32082	32134	51744	51744					0.06750602511419856
LPVLLESRR	9	Unmodified	_LPVLLESRR_					0	0	0			REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF	REV__ENST00000332995.11_1_6:13287467-13287647:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.3088989257812	2	541.837665	1081.66078	-0.26944	-0.00014599	-1.314	-0.00071195	-1.5834	-0.00085795	541.836921935234	43.089	0.21854	43.12	43.01	43.229	0.030823					8	5	2	0	0	0	0.024541	1	3937	3937		23.042	3.6825	1	49605	+		46299	30498	32083	32135	51745	51745					0.1232140001393418
LPVLYLSL	8	Unmodified	_LPVLYLSL_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2406005859375	2	459.288954	916.563355	-0.24079	-0.00011059	-4.47	-0.002053	-4.7108	-0.0021636	459.2866855175382	54.34	0.78812	54.34	54.043	54.831	0					30	22	2	0	0	0	0.027866	1	5948	5948		20.482	5.8177	1	353150			46300	2683	32084	32136	51746	51746					0.10173618085093494
LPVNLGLTL	9	Unmodified	_LPVNLGLTL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.29595947265625	2	470.29731	938.580068	0.42949	0.00020199	-3.8487	-0.00181	-3.4192	-0.001608	470.2956050534098	18.752	1.227	18.621	18.352	19.579	-0.13147					58	24	4	0	0	0	0.94809	1	338	338		29.15	2.3535	1	4297100	+		46301	24281	32085	32137	51747	51747					0.10832118971029558
LPVPDSSR	8	Unmodified	_LPVPDSSR_					0	0	0		ENST00000305123.5_1_2:227663009-227664002:-|nuORF	ENST00000305123.5_1_2:227663009-227664002:-|nuORF	ENST00000305123.5_1_2:227663009-227664002:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7922058105469	2	435.737617	869.460681	0.1671	7.281E-05	-0.584	-0.00025447	-0.4169	-0.00018166	435.737713058763	32.951	0.68602	32.751	32.37	33.056	-0.20019					22	16	2	0	0	0	0.027866	1	2335	2335		16.473	0	1	52485			46302	11984	32086	32138	51748	51748					0.02072925346340071
LPVPLLPKMP	10	Unmodified	_LPVPLLPKMP_					0	0	0		ENST00000326294.3_1_11:67203005-67203194:-|nuORF	ENST00000326294.3_1_11:67203005-67203194:-|nuORF	ENST00000326294.3_1_11:67203005-67203194:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.823974609375	2	552.846113	1103.67767	-0.36165	-0.00019994	-1.7996	-0.00099491	-2.1613	-0.0011948	552.8446226038564	75.638	0.23465	75.366	75.267	75.502	-0.27266					7	5	2	0	0	0	0.03519	1	8954	8954		17.365	0	1	53430			46303	12280	32087	32139	51749	51749					0.12998184575531013
LPVPRFELP	9	Unmodified	_LPVPRFELP_					0	0	0			REV__ENSG00000121851|ENST00000369314|POLR3GL	REV__ENSG00000121851|ENST00000369314|POLR3GL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7988891601562	2	534.316035	1066.61752	-0.6374	-0.00034057	-3.4165	-0.0018255	-4.0539	-0.002166	534.8155410112386	57.391	0.23211	57.391	57.227	57.459	0					6	5	2	0	0	0	0.024436	1	6461	6461		30.504	1.3541	1	53546	+		46304	22611	32088	32140	51750	51750					0.08687210236666942
LPVPTFSHAR	10	Unmodified	_LPVPTFSHAR_					0	0	0		ENST00000412872.3_1_6:68598425-68598952:-|nuORF	ENST00000412872.3_1_6:68598425-68598952:-|nuORF	ENST00000412872.3_1_6:68598425-68598952:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2962036132812	2	562.81419	1123.61383	-0.14385	-8.096E-05	3.9606	0.0022291	3.8167	0.0021481	562.816616837629	21.731	0.67183	21.54	21.275	21.947	-0.19072					24	13	2	0	0	0	0.03519	1	691	691		24.519	0	1	55234			46305	13828	32089	32141	51751	51751					0.056965404627817406
LPVPTRAPAI	10	Unmodified	_LPVPTRAPAI_					0	0	0			REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.819580078125	2	517.821484	1033.62842	-0.030829	-1.5964E-05	-4.0444	-0.0020943	-4.0752	-0.0021102	517.8192656635947	91.828	1.1456	91.837	91.4	92.546	0.0094147					75	27	4	0	0	0	1.0271	1	11570	11570		42.396	8.8806	1	1415000	+		46306	33322	32090	32142	51752	51752					0.11294612610936383
LPVPTRNT	8	Unmodified	_LPVPTRNT_					0	0	0			REV__ENST00000301021.7_1_16:88928598-88928910:+|nuORF	REV__ENST00000301021.7_1_16:88928598-88928910:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.26214599609375	2	449.261259	896.507966	0.10115	4.5441E-05	0.062765	2.8198E-05	0.16391	7.3639E-05	449.2611045981265	41.32	1.0194	41.343	40.97	41.99	0.023006					101	28	6	0	0	0	0.89627	1	3661	3661		51.335	0	1	5774200	+		46307	30053	32091	32143	51753	51753					0.055572046173210765
LPVPTSYAL	9	Unmodified	_LPVPTSYAL_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.78936767578125	2	480.773668	959.532783	-0.67058	-0.0003224	-3.7135	-0.0017854	-4.3841	-0.0021078	480.7718854008964	33.405	1.2228	33.24	32.76	33.982	-0.16565					59	30	3	0	0	0	0.024487	1	2431	2431		11.511	0	1	883830			46308	9697	32092	32144	51754	51754					0.05139839700041193
LPVPYAAF	8	Unmodified	_LPVPYAAF_					0	0	0		nc|ENSG00000137075|Q9H0F5-5|RNF38;nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38	nc|ENSG00000137075|Q9H0F5-5|RNF38	nc|ENSG00000137075|Q9H0F5-5|RNF38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2664794921875	2	439.244547	876.47454	0.092382	4.0578E-05	-0.25032	-0.00010995	-0.15794	-6.9373E-05	439.243833566849	43.041	0.68983	42.902	42.484	43.174	-0.13929					30	18	3	0	0	0	0.027866	1	4019	4019		10.185	0	1	125720			46309	5086	32093	32145	51755	51755					0.03136202845416847
LPVRALDVL	9	Unmodified	_LPVRALDVL_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-2|MTO1;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1;ENST00000370308.8_1_6:74189644-74210455:+|nuORF	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3159484863281	2	498.316035	994.617516	0.051568	2.5697E-05	-0.17377	-8.6593E-05	-0.1222	-6.0896E-05	498.315858433549	67.171	1.2354	67.195	66.812	68.047	0.023903					61	30	3	0	0	0	0.23085	1	7932	7932		84.916	5.2029	1	4980500			46310	4873	32094	32146	51756	51756					0.11999210236638191
LPVRGGRG	8	Unmodified	_LPVRGGRG_					0	0	0		ENST00000348035.8_1_7:6414157-6414364:+|nuORF	ENST00000348035.8_1_7:6414157-6414364:+|nuORF	ENST00000348035.8_1_7:6414157-6414364:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.2481384277344	2	406.248486	810.48242	0.98045	0.00039831	-0.66778	-0.00027128	0.31267	0.00012702	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0574	1	11166	11166		25.45	1.2474	1	123310000			46311	12574	32095	32147	51757	51757					0.06959774885569914
LPVRRSGT	8	Unmodified	_LPVRRSGT_					0	0	0		ENST00000304312.4_1_4:667181-668083:-|nuORF	ENST00000304312.4_1_4:667181-668083:-|nuORF	ENST00000304312.4_1_4:667181-668083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.26666259765625	2	443.266876	884.519199	0.58884	0.00026101	-0.44474	-0.00019714	0.14409	6.3871E-05	443.26659446344723	85.917	1.0344	85.78	85.452	86.487	-0.13734					64	23	4	0	0	0	1.0009	1	10408	10408		37.159	0	1	878650			46312	11975	32096	32148	51758	51758					0.07232026711460549
LPVRSLGVG	9	Unmodified	_LPVRSLGVG_					0	0	0			REV__nc|ENSG00000006015|Q96EN9-2|REX1BD	REV__nc|ENSG00000006015|Q96EN9-2|REX1BD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.27020263671875	2	449.279452	896.544351	-1.2725	-0.00057172	1.4089	0.000633	0.13639	6.1278E-05	449.27992616358534	21.552	0.48537	21.339	21.118	21.604	-0.2128					21	9	3	0	0	0	0.024506	1	633	633		23.042	6.5693	1	139710	+		46313	35802	32097	32149	51759	51759					0.09194081514056052
LPVSAEKSHL	10	Unmodified	_LPVSAEKSHL_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8056030273438	2	540.806031	1079.59751	-0.83867	-0.00045356	0.8381	0.00045325	-0.00056441	-3.0524E-07	540.8061123399344	52.729	1.1466	52.729	52.085	53.232	0					78	29	4	0	0	0	0.91678	1	5673	5673		52.937	1.4089	1	6202200			46314	1899	32098	32150	51760	51760					0.060894145060501614
LPVSAPLGAP	10	Unmodified	_LPVSAPLGAP_					0	0	0			REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.2324523925781	2	461.273835	920.533118	-0.25235	-0.0001164	3.6543	0.0016857	3.402	0.0015692	461.2753796147297	25.48	0.45924	25.31	25.122	25.581	-0.17078					22	10	3	0	0	0	0.03519	1	1189	1189		21.96	3.6355	1	433250	+		46315	35300	32099	32151	51761	51761					0.06967259419900529
LPVSAPLGAP	10	Unmodified	_LPVSAPLGAP_					0	0	0			REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	461.273835	920.533118	-0.6006	-0.00027704	3.9995	0.0018449	3.3989	0.0015678	461.2755225979257	25.767	0.46004	25.54	25.311	25.771	-0.22683	0.11417	0.00021112	NaN	21.96	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423370	+		46316	35300	32099	32151							0.06967259419900529
LPVSAPLGAP	10	Unmodified	_LPVSAPLGAP_					0	0	0			REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	461.273835	920.533118	-0.27891	-0.00012865	3.6647	0.0016904	3.3858	0.0015618	461.2754550242075	25.599	0.46527	25.428	25.2	25.666	-0.17151	0.0018448	-9.781E-05	NaN	21.96	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356170	+		46317	35300	32099	32151							0.06967259419900529
LPVSGRVQ	8	Unmodified	_LPVSGRVQ_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.8707275390625	2	428.255977	854.497401	0.99263	0.0004251	-1.0072	-0.00043135	-0.014604	-6.254E-06	428.25536321164094	37.024	0.70857	36.814	36.405	37.114	-0.2092					34	17	4	0	0	0	0.027866	1	2907	2907		40.573	7.057	1	226980	+		46318	22000	32100	32152	51762	51762					0.06433221962890912
LPVSIRPSL	9	Unmodified	_LPVSIRPSL_					0	0	0			REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.29156494140625	2	491.30821	980.601866	0.85375	0.00041946	-0.9642	-0.00047372	-0.11044	-5.4262E-05	491.3077026895009	70.661	0.49312	70.368	70.263	70.756	-0.29291					14	11	2	0	0	0	0.024506	1	8529	8529		23.042	0	1	547580	+		46319	22417	32101	32153	51763	51763					0.11078923719594513
LPVSPEPNG	9	Unmodified	_LPVSPEPNG_					0	0	0		ENST00000610146.1_1_1:155951728-155952130:+|nuORF	ENST00000610146.1_1_1:155951728-155952130:+|nuORF	ENST00000610146.1_1_1:155951728-155952130:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.2376708984375	2	455.23745	908.460347	0.11666	5.3106E-05	-1.1354	-0.00051686	-1.0187	-0.00046375	455.2369481254935	102.78	0.67911	102.79	102.5	103.18	0.0054169					39	16	3	0	0	0	0.89441	1	13140	13140		32.812	2.4947	1	1416400			46320	17615	32102	32154	51764	51764					0.002455056264693667
LPVTRHPL	8	Unmodified	_LPVTRHPL_					0	0	0		ENST00000377658.8_1_1:6651717-6651999:-|nuORF	ENST00000377658.8_1_1:6651717-6651999:-|nuORF	ENST00000377658.8_1_1:6651717-6651999:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.738037109375	2	466.787444	931.560336	-0.31829	-0.00014857	1.2369	0.00057737	0.91861	0.0004288	466.787817005815	45.437	0.49924	45.289	45.115	45.614	-0.1488					21	14	2	0	0	0	0.027866	1	4385	4385		31.955	2.8053	1	266260			46321	13211	32103	32155	51765	51765					0.09181787750935655
LPVVPRLRL	9	Unmodified	_LPVVPRLRL_					0	0	0			REV__nc|ENSG00000231852|P08686-2|CYP21A2	REV__nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.842529296875	2	531.860944	1061.70733	-1.2049	-0.00064081	1.3255	0.00070497	0.12062	6.4153E-05	531.8621799763807	51.235	0.22194	51.322	51.189	51.411	0.087006					8	5	2	0	0	0	0.024541	1	5363	5363		25.45	11.675	1	76528	+		46322	28899	32104	32156	51766	51766					0.17894884635870767
LPVVPRLRL	9	Unmodified	_LPVVPRLRL_					0	0	0			REV__nc|ENSG00000231852|P08686-2|CYP21A2	REV__nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.860944	1061.70733	-0.25208	-0.00013407	-4.8453	-0.002577	-5.0974	-0.0027111	531.8582709739359	51.286	0.17995	51.286	51.143	51.323	0	-0.018161	-0.0031893	NaN	25.45	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51488	+		46323	28899	32104	32156							0.17894884635870767
LPWARPEPS	9	Unmodified	_LPWARPEPS_					0	0	0			REV__ENSG00000160973|ENST00000377317|FOXH1	REV__ENSG00000160973|ENST00000377317|FOXH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2510986328125	2	526.779816	1051.54508	-0.027597	-1.4538E-05	-0.17536	-9.2378E-05	-0.20296	-0.00010692	526.7796608357131	61.967	0.83214	61.71	61.342	62.174	-0.25725					48	20	3	0	0	0	0.024025	1	6963	6963		82.241	21.269	1	2703700	+		46324	25367	32105	32157	51767	51767					0.021368761630810695
LPWARPEPS	9	Unmodified	_LPWARPEPS_					0	0	0			REV__ENSG00000160973|ENST00000377317|FOXH1	REV__ENSG00000160973|ENST00000377317|FOXH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.779816	1051.54508	-1.1694	-0.00061601	0.81259	0.00042805	-0.35679	-0.00018795	526.7800946172866	61.781	0.66598	61.781	61.414	62.08	0	0.06807	0.00054746	NaN	82.241	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1587200	+		46325	25367	32105	32157							0.021368761630810695
LPWARPEPS	9	Unmodified	_LPWARPEPS_					0	0	0			REV__ENSG00000160973|ENST00000377317|FOXH1	REV__ENSG00000160973|ENST00000377317|FOXH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.779816	1051.54508	-0.30367	-0.00015997	-0.11445	-6.0289E-05	-0.41812	-0.00022026	526.7796131831799	61.97	0.70395	61.743	61.415	62.119	-0.22663	0.03016	-0.00042923	NaN	82.241	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1789500	+		46326	25367	32105	32157							0.021368761630810695
LPWARPEPS	9	Unmodified	_LPWARPEPS_					0	0	0			REV__ENSG00000160973|ENST00000377317|FOXH1	REV__ENSG00000160973|ENST00000377317|FOXH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.779816	1051.54508	-0.20716	-0.00010913	0.0026939	1.4191E-06	-0.20447	-0.00010771	526.7795810041088	61.669	0.66208	61.74	61.434	62.096	0.071125	0.026937	-0.00030581	NaN	82.241	50	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1553900	+		46327	25367	32105	32157							0.021368761630810695
LPWGLDLEPV	10	Unmodified	_LPWGLDLEPV_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2783203125	2	569.810782	1137.60701	0.35188	0.00020051	-1.165	-0.00066384	-0.81314	-0.00046333	569.8100183797802	79.738	0.50101	79.519	79.285	79.786	-0.21923					31	11	3	0	0	0	0.03519	1	9570	9570		35.618	6.4482	1	660770	+		46328	27375	32106	32158	51768	51768					0.04371182791555839
LPWGMGPK	8	Unmodified	_LPWGMGPK_					0	0	0			REV__ENST00000295400.10_1_2:70675013-70675355:-|nuORF	REV__ENST00000295400.10_1_2:70675013-70675355:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2737731933594	2	443.236199	884.457844	0.17244	7.6432E-05	2.1766	0.00096474	2.349	0.0010412	443.23697831505694	50.386	0.36594	50.467	50.243	50.609	0.080994					12	10	2	0	0	0	0.027866	1	5207	5207		37.028	4.2161	1	108480	+		46329	29979	32107	32159	51769	51769					0.010993786878202627
LPWIGYLT	8	Unmodified	_LPWIGYLT_					0	0	0			REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2453918457031	2	481.770929	961.527304	-0.4199	-0.0002023	-3.2544	-0.0015679	-3.6743	-0.0017702	481.76893020491946	61.277	0.48763	61.02	60.772	61.259	-0.25644					28	11	4	0	0	0	0.027866	1	6816	6816		33.516	0	1	348390	+		46330	23265	32108	32160	51770	51770					0.04500160908230555
LPWRLGSA	8	Unmodified	_LPWRLGSA_					0	0	0			REV__nc|ENSG00000100150|O75140-6|DEPDC5	REV__nc|ENSG00000100150|O75140-6|DEPDC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2746276855469	2	450.25852	898.502486	0.095397	4.2954E-05	0.65439	0.00029465	0.74979	0.0003376	450.25928106601833	92.395	0.40743	92.253	92.171	92.579	-0.14131					11	9	2	0	0	0	0.027866	1	11352	11352		26.796	0	1	280430	+		46331	36515	32109	32161	51771	51771					0.04917525825521807
LPWSNYLV	8	Unmodified	_LPWSNYLV_					0	0	0			REV__ENSG00000118492|ENST00000397944|ADGB	REV__ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2655944824219	2	496.26601	990.517468	-0.24536	-0.00012176	-1.2444	-0.00061756	-1.4898	-0.00073933	496.26541624758113	37.364	3.0166	37.396	36.127	39.143	0.032269					163	82	2	0	0	0	0.74904	1	3004	3004		63.306	2.3343	1	8318800	+		46332	22408	32110	32162	51772	51772					0.021829729028468137
LPWTSPHS	8	Unmodified	_LPWTSPHS_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7718200683594	2	462.732335	923.450116	-0.41709	-0.000193	-3.1885	-0.0014754	-3.6056	-0.0016684	462.7307716696845	23.276	0.27548	23.276	23.165	23.441	0					10	6	2	0	0	0	0.027866	1	888	888		33.516	0	1	44302			46333	2089	32111	32163	51773	51773					-0.014670573080934446
LPWWGAIAAC	10	Unmodified	_LPWWGAIAAC_					0	0	0		ENST00000556473.1_1_14:23236245-23237424:+|nuORF;ENST00000483939.6_1_14:23235910-23237424:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;nc|ENSG00000155463|Q15070-2|OXA1L;ENSG00000155463|ENST00000612549|OXA1L	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	544.2769775390625	2	544.273312	1086.53207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.871	1	16.617	16.117	17.117	-0.25378								0	0	0	0.77053	1	91	91		19.36	0	1				46334	6473	32112	32164	51774	51774					-0.007732782206630873
LPYAREIT	8	Unmodified	_LPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.7690734863281	2	481.768917	961.523281	0.4061	0.00019565	-0.59353	-0.00028595	-0.18743	-9.0299E-05	481.7684700086809	41.208	0.70709	41.208	40.871	41.579	0					50	19	4	0	0	0	0.50239	1	3701	3701		85.359	0.44396	1	3118800	+		46335	25147	32113	32165	51775	51775					0.04098071414500737
LPYAREIT	8	Unmodified	_LPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	481.768917	961.523281	0.4061	0.00019565	-0.59353	-0.00028595	-0.18743	-9.0299E-05	481.7684700086809	41.208	0.70709	41.208	40.871	41.579	0	-0.071079	-0.00019695	NaN	85.359	50	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3118800	+		46336	25147	32113	32165							0.04098071414500737
LPYAREIT	8	Unmodified	_LPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.768917	961.523281	0.20531	9.8913E-05	-0.46076	-0.00022198	-0.25544	-0.00012306	481.7686557378111	41.362	0.59438	41.239	40.943	41.537	-0.12318	-0.039948	-6.9018E-05	NaN	85.359	51	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2888300	+		46337	25147	32113	32165							0.04098071414500737
LPYAREIT	8	Unmodified	_LPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.768917	961.523281	-0.10097	-4.8644E-05	-0.012366	-5.9576E-06	-0.11334	-5.4602E-05	481.7687786173305	41.367	0.77171	41.39	40.934	41.706	0.023003	0.11103	0.00036302	NaN	85.359	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2816600	+		46338	25147	32113	32165							0.04098071414500737
LPYGPGYW	8	Unmodified	_LPYGPGYW_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.7693786621094	2	476.731803	951.449054	-0.78147	-0.00037255	-0.39038	-0.0001861	-1.1718	-0.00055866	476.7313365945892	26.085	1.7918	25.922	24.479	26.271	-0.16331					57	45	2	0	0	0	0.027866	1	1189	1189		16.705	0	1	178720			46339	8853	32114	32166	51776	51776					-0.028612716770112456
LPYIKQEV	8	Unmodified	_LPYIKQEV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2869873046875	2	495.286943	988.559333	0.58553	0.00029	-1.0783	-0.00053409	-0.49281	-0.00024408	495.28632182419534	51.385	1.676	51.273	50.379	52.055	-0.11163					117	44	4	0	0	0	0.12938	3	5291	5255;5278;5291		152.47	32.914	1	7741800			46340	1100	32115	32167	51777;51778;51779	51779					0.0645952859136969
LPYIKQEV	8	Unmodified	_LPYIKQEV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2867431640625	2	495.286943	988.559333	-0.92213	-0.00045672	0.34712	0.00017192	-0.57502	-0.0002848	495.28700360356544	51.65	1.6388	51.381	50.451	52.089	-0.26903					118	43	4	0	0	0	0.2677	6	5295	5273;5284;5295;5307;5321;5335		125.81	33.699	1	7887100			46341	1100	32115	32167	51780;51781;51782;51783;51784;51785	51782					0.0645952859136969
LPYIKQEV	8	Unmodified	_LPYIKQEV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B;POLR2B|p.C1122Vfs*3|1|0.24|ENSG00000047315|chr4:57030326-57030326|T/-|frameshift_variant;POLR2B|p.G1034Wfs*24|1|0.21|ENSG00000047315|chr4:57025396-57025397|-/T|frameshift_variant	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2874755859375	2	495.286943	988.559333	0.9763	0.00048355	-1.5768	-0.00078097	-0.60051	-0.00029743	495.28607684254075	51.466	1.7023	51.282	50.531	52.233	-0.18404					116	44	4	0	0	0	0.2677	6	5255	5255;5265;5277;5290;5304;5316		125.81	25.782	1	7629100			46342	1100	32115	32167	51786;51787;51788;51789;51790;51791	51786					0.0645952859136969
LPYLNIAH	8	Unmodified	_LPYLNIAH_					0	0	0		ENST00000529212.1_1_14:61509878-61512131:+|nuORF	ENST00000529212.1_1_14:61509878-61512131:+|nuORF	ENST00000529212.1_1_14:61509878-61512131:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.76470947265625	2	470.766178	939.517802	0.020001	9.4159E-06	-4.3178	-0.0020327	-4.2978	-0.0020233	470.76404929314816	35.842	0.70498	35.629	35.314	36.019	-0.21246					52	19	4	0	0	0	0.71717	1	2751	2751		65.897	0.094285	1	2648600			46343	16205	32116	32168	51792	51792					0.04562392622699463
LPYLNIAH	8	Unmodified	_LPYLNIAH_					0	0	0		ENST00000529212.1_1_14:61509878-61512131:+|nuORF	ENST00000529212.1_1_14:61509878-61512131:+|nuORF	ENST00000529212.1_1_14:61509878-61512131:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.7637634277344	2	470.766178	939.517802	-0.23569	-0.00011096	-3.8653	-0.0018197	-4.101	-0.0019306	470.76423791539344	35.724	0.88379	35.526	35.288	36.172	-0.19829					55	24	3	0	0	0	0.44541	1	2724	2724		90.939	7.6518	1	2827400			46344	16205	32116	32168	51793	51793					0.04562392622699463
LPYLWLFQG	9	Unmodified	_LPYLWLFQG_					0	0	0			REV__ENST00000468186.5_1_3:9431996-9435789:-|nuORF	REV__ENST00000468186.5_1_3:9431996-9435789:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.2769775390625	2	568.810585	1135.60662	-0.12974	-7.38E-05	-0.15415	-8.7679E-05	-0.28389	-0.00016148	568.810467767449	78.766	1.2079	78.574	78.298	79.506	-0.1921					61	28	3	0	0	0	0.024466	1	9845	9845		18.324	0	1	514950	+		46345	33098	32117	32169	51794	51794					0.04423807862372087
LPYNLSLEV	9	Unmodified	_LPYNLSLEV_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2877807617188	2	524.289682	1046.56481	-0.49173	-0.00025781	-3.779	-0.0019813	-4.2707	-0.0022391	524.2876664873692	27.856	0.63232	27.611	27.289	27.922	-0.24499					38	14	3	0	0	0	0.18915	1	1571	1571		90.777	2.1338	1	2651700			46346	10198	32118	32170	51795	51795					0.04339207383191024
LPYNLSLEV	9	Unmodified	_LPYNLSLEV_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.287841796875	2	524.289682	1046.56481	-0.76442	-0.00040078	-3.4083	-0.001787	-4.1728	-0.0021877	524.2878889370006	27.676	0.6178	27.508	27.23	27.847	-0.16816					38	14	3	0	0	0	0.16468	1	1555	1555		96.19	13.44	1	2805700			46347	10198	32118	32170	51796	51796					0.04339207383191024
LPYQPIPI	8	Unmodified	_LPYQPIPI_					0	0	0			REV__ENSG00000167701|ENST00000394955|GPT;REV__ENSG00000166123|ENST00000340124|GPT2	REV__ENSG00000167701|ENST00000394955|GPT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.7953186035156	2	470.778754	939.542954	0.097581	4.5939E-05	-3.7801	-0.0017796	-3.6825	-0.0017336	470.77690405498635	42.598	0.8412	42.475	41.924	42.765	-0.12299					60	21	4	0	0	0	0.027866	1	3841	3841		46.766	0	1	2507400	+		46348	26181;25971	32119	32171	51797	51797					0.07076447425288279
LPYQPIPI	8	Unmodified	_LPYQPIPI_					0	0	0			REV__ENSG00000167701|ENST00000394955|GPT;REV__ENSG00000166123|ENST00000340124|GPT2	REV__ENSG00000167701|ENST00000394955|GPT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.778754	939.542954	0.34122	0.00016064	-1.0744	-0.0005058	-0.73318	-0.00034517	470.778259844817	42.741	0.43256	42.741	42.534	42.967	0	0.10756	0.0022576	NaN	65.897	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143930	+		46349	26181;25971	32119	32171							0.07076447425288279
LPYQPIPI	8	Unmodified	_LPYQPIPI_					0	0	0			REV__ENSG00000167701|ENST00000394955|GPT;REV__ENSG00000166123|ENST00000340124|GPT2	REV__ENSG00000167701|ENST00000394955|GPT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.778754	939.542954	0.76707	0.00036112	-2.0831	-0.00098069	-1.3161	-0.00061957	470.777386951529	42.84	0.364	42.866	42.641	43.005	0.026012	0.23239	0.0013078	NaN	65.897	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129560	+		46350	26181;25971	32119	32171							0.07076447425288279
LPYSVIRGE	9	Unmodified	_LPYSVIRGE_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3237915039062	2	517.287474	1032.5604	-0.044532	-2.3036E-05	-0.20576	-0.00010644	-0.25029	-0.00012947	517.2872915745841	50.428	0.59549	50.323	50.011	50.606	-0.10558					31	15	3	0	0	0	0.024456	1	5155	5155		21.686	0	1	560500			46351	231	32120	32172	51798	51798					0.04541742960304873
LPYYFLAI	8	Unmodified	_LPYYFLAI_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3068542480469	2	500.281129	998.547705	-0.41576	-0.000208	-1.579	-0.00078994	-1.9948	-0.00099794	500.78014553796635	30.892	0.50741	30.904	30.75	31.257	0.011797					18	11	2	0	0	0	0.027866	1	2043	2043		16.705	0	1	102330	+		46352	20408	32121	32173	51799	51799					0.04837331568035097
LQAALDHASP	10	Unmodified	_LQAALDHASP_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7894592285156	2	511.766906	1021.51926	-0.44106	-0.00022572	0.63886	0.00032695	0.1978	0.00010123	511.76682072044696	41.594	0.57744	41.363	41.003	41.58	-0.23029					42	14	4	0	0	0	0.03519	1	3675	3675		21.96	1.013	1	326200	+		46353	21449	32122	32174	51800	51800					0.009359819207929831
LQAAPRGM	8	Unmodified	_LQAAPRGM_					0	0	0		ENST00000295549.8_1_2:177502248-177502497:-|nuORF	ENST00000295549.8_1_2:177502248-177502497:-|nuORF	ENST00000295549.8_1_2:177502248-177502497:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2223205566406	2	422.228905	842.443257	-0.58095	-0.00024529	0.70585	0.00029803	0.1249	5.2736E-05	422.22930526327895	29.389	0.38778	29.393	29.204	29.591	0.0031357					16	9	2	0	0	0	0.027866	1	1809	1809		20.482	0	1	114310			46354	11827	32123	32175	51801	51801					0.01573306539683017
LQAAPYLFQAS	11	Unmodified	_LQAAPYLFQAS_					0	0	0			REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8720703125	3	403.548518	1207.62372	0.5279	0.00021303	-3.7493	-0.001513	-3.2214	-0.0013	403.5467750646532	33.708	0.70038	33.508	33.016	33.717	-0.20019					29	17	3	0	0	0	0.024745	1	2357	2357		29.245	5.8671	1	313490	+		46355	35227	32124	32176	51802	51802					0.02821683677530018
LQAERSSKV	9	Unmodified	_LQAERSSKV_					0	0	0			REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF	REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8106384277344	2	509.288005	1016.56146	-0.18002	-9.1683E-05	4.0741	0.0020749	3.8941	0.0019832	509.2898197049766	48.928	0.78214	48.928	48.654	49.437	0					56	21	3	0	0	0	0.024495	1	5044	5044		34.173	5.023	1	1762900	+		46356	35973	32125	32177	51803	51803					0.05383957329195255
LQAGCVPVVI	10	Unmodified	_LQAGCVPVVI_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000531161.5_1_11:44146432-44228372:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.7911682128906	2	499.788795	997.563038	-0.72475	-0.00036222	4.0748	0.0020365	3.3501	0.0016743	499.79077422265095	29.637	1.0568	29.464	29.113	30.17	-0.17258					46	24	4	0	0	0	0.75995	1	1827	1827		63.306	5.495	1	4109400			46357	6197	32126	32178	51804	51804					0.06415875093591694
LQAGRDLQ	8	Unmodified	_LQAGRDLQ_					0	0	0			REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7793273925781	2	450.748516	899.482479	-0.42449	-0.00019134	0.93144	0.00041985	0.50696	0.00022851	450.74876331764057	25.662	0.54938	25.662	25.363	25.912	0					20	12	2	0	0	0	0.027866	1	1268	1268		40.778	0	1	83975	+		46358	29861	32127	32179	51805	51805					0.028717300948869706
LQAHADDPE	9	Unmodified	_LQAHADDPE_					0	0	0		ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2979736328125	2	498.225071	994.435589	-0.047078	-2.3456E-05	0.79332	0.00039525	0.74624	0.00037179	498.22544194257136	61.558	0.5224	61.629	61.434	61.956	0.071129					23	13	2	0	0	0	0.022756	1	7078	7078		79.451	19.157	1	329330			46359	4372	32128	32180	51806	51806					-0.06185174246911629
LQAHADDPE	9	Unmodified	_LQAHADDPE_					0	0	0		ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.225071	994.435589	-0.23802	-0.00011859	1.0495	0.00052286	0.81143	0.00040427	498.2255532898842	61.933	0.51593	61.719	61.416	61.932	-0.21375	0.052749	0.00011779	NaN	79.451	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411000			46360	4372	32128	32180							-0.06185174246911629
LQAHLVAQTN	10	Unmodified	_LQAHLVAQTN_					0	0	0		ENSG00000136717|ENST00000316724|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-5|BIN1	ENSG00000136717|ENST00000316724|BIN1	ENSG00000136717|ENST00000316724|BIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.802734375	2	547.80128	1093.58801	-0.47431	-0.00025983	1.3324	0.00072988	0.85807	0.00047005	547.8011848512032	30.849	1.4009	30.696	30.341	31.742	-0.15231					88	34	3	0	0	0	1.0816	1	1968	1968		35.152	2.3396	1	1311900			46361	5038	32129	32181	51807	51807					0.044956462205163916
LQAIPKNI	8	Unmodified	_LQAIPKNI_					0	0	0		ENSG00000187122|ENST00000266058|SLIT1;ENST00000456008.2_1_10:98917340-98945578:-|nuORF;nc|ENSG00000187122|O75093-2|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.7842712402344	2	448.781828	895.549102	0.19361	8.6887E-05	4.3454	0.0019501	4.539	0.002037	448.78358656205074	101	0.68254	101	100.73	101.42	0					31	15	3	0	0	0	0.91239	1	12928	12928		50.025	5.4935	1	302800			46362	9609	32130	32182	51808	51808					0.09714965656814911
LQAKEAKEKAK	11	Unmodified	_LQAKEAKEKAK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.5596618652344	3	415.250472	1242.72959	-0.32422	-0.00013463	2.4652	0.0010237	2.141	0.00088905	415.5859508294944	26.199	0.77579	26.031	25.774	26.55	-0.16816					44	21	4	0	0	0	0.024763	1	1384	1384		42.243	5.7147	1	127690			46363	18498	32131	32183	51809	51809					0.11793019522997383
LQAKKEIFV	9	Unmodified	_LQAKKEIFV_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.328369140625	2	538.329142	1074.64373	-0.12202	-6.5684E-05	-3.9102	-0.002105	-4.0322	-0.0021706	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	0.53979	3	12782	12758;12782;12798		56.721	12.995	1	22543000	+		46364	23507	32132	32184	51810;51811;51812	51811					0.10939479408125408
LQAKKEIFV	9	Unmodified	_LQAKKEIFV_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.327392578125	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.67687	2	12717	12717;12761		47.657	10.772	1	22988000	+		46365	23507	32132	32184	51813;51814	51813					0.10939479408125408
LQAKKEIFV	9	Unmodified	_LQAKKEIFV_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3275756835938	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	0.53979	2	12705	12693;12705		56.721	5.3856	1	22353000	+		46366	23507	32132	32184	51815;51816	51816					0.10939479408125408
LQAKKEIFV	9	Unmodified	_LQAKKEIFV_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.32861328125	2	538.329142	1074.64373	0.30756	0.00016557	-4.081	-0.0021969	-3.7735	-0.0020314	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.82115	1	12428	12428		37.812	7.3079	1	21168000	+		46367	23507	32132	32184	51817	51817					0.10939479408125408
LQAKKEIFV	9	Unmodified	_LQAKKEIFV_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3273315429688	2	538.329142	1074.64373	0.47679	0.00025667	-4.3339	-0.002333	-3.8571	-0.0020764	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	0.80658	1	12345	12345		38.806	0	1	21461000	+		46368	23507	32132	32184	51818	51818					0.10939479408125408
LQAKKEIFV	9	Unmodified	_LQAKKEIFV_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3270874023438	2	538.329142	1074.64373	-0.74783	-0.00040258	-3.1387	-0.0016897	-3.8866	-0.0020923	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	0.89441	1	12352	12352		32.812	0.061884	1	21993000	+		46369	23507	32132	32184	51819	51819					0.10939479408125408
LQAKRGAAM	9	Unmodified	_LQAKRGAAM_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.26983642578125	2	473.268561	944.52257	0.042094	1.9922E-05	1.491	0.00070563	1.5331	0.00072555	473.26940350167234	26.787	0.8901	26.766	26.529	27.419	-0.020962					27	22	2	0	0	0	0.80658	1	1385	1385		38.806	5.2906	1	724290	+		46370	20419	32133	32185	51820	51820					0.04808953493829904
LQAKRGAAM	9	Unmodified	_LQAKRGAAM_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	473.268561	944.52257	0.042094	1.9922E-05	1.491	0.00070563	1.5331	0.00072555	473.26940350167234	26.787	0.8901	26.766	26.529	27.419	-0.020962	-0.013441	0.0002365	NaN	38.806	27	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	724290	+		46371	20419	32133	32185							0.04808953493829904
LQAKRGAAM	9	Unmodified	_LQAKRGAAM_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	473.268561	944.52257	-0.31777	-0.00015039	2.3705	0.0011219	2.0527	0.00097149	473.26977821752905	26.729	1.1027	26.811	26.29	27.392	0.081291	0.030995	0.001069	NaN	38.806	55	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503930	+		46372	20419	32133	32185							0.04808953493829904
LQAKWKAPD	9	Unmodified	_LQAKWKAPD_					0	0	0			REV__ENSG00000117595|ENST00000367021|IRF6	REV__ENSG00000117595|ENST00000367021|IRF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.3291015625	2	528.795466	1055.57638	-0.35597	-0.00018824	0.95743	0.00050629	0.60146	0.00031805	528.7956012974603	78.074	0.46248	77.812	77.528	77.991	-0.26202					15	10	2	0	0	0	0.024405	1	9263	9263		35.618	0	1	120440	+		46373	22358	32134	32186	51821	51821					0.0508144919717779
LQALEFHTV	9	Unmodified	_LQALEFHTV_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.3109741210938	2	529.287474	1056.5604	-0.39908	-0.00021123	0.37371	0.0001978	-0.025374	-1.343E-05	529.2875246169278	57.06	0.55364	56.896	56.606	57.16	-0.16431					22	14	2	0	0	0	0.024457	1	6383	6383		37.159	9.2769	1	531730			46374	2924	32135	32187	51822	51822					0.034377429602727716
LQALEFHTV	9	Unmodified	_LQALEFHTV_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3113403320312	2	529.287474	1056.5604	-0.26248	-0.00013893	0.90922	0.00048124	0.64674	0.00034231	529.2874103626905	56.761	0.58102	56.859	56.51	57.091	0.097897					30	16	3	0	0	0	0.024294	1	6284	6284		55.504	16.251	1	655780			46375	2924	32135	32187	51823	51823					0.034377429602727716
LQALEMEE	8	Unmodified	_LQALEMEE_					0	0	0		nc|ENSG00000204138|Q8IZ21-4|PHACTR4	nc|ENSG00000204138|Q8IZ21-4|PHACTR4	nc|ENSG00000204138|Q8IZ21-4|PHACTR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.76092529296875	2	481.7286	961.442648	-0.12145	-5.8505E-05	-1.6144	-0.00077771	-1.7359	-0.00083621	481.7276679413348	41.4	1.1211	41.423	40.696	41.818	0.023003					66	31	3	0	0	0	0.027866	1	3719	3719		33.516	5.2613	1	999930			46376	18654	32136	32188	51824	51824					-0.039615776906885
LQALHRSGY	9	Unmodified	_LQALHRSGY_					0	0	0			REV__ENST00000592769.1_1_19:46201738-46202042:+|nuORF	REV__ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7846069335938	2	522.78289	1043.55123	0.46086	0.00024093	3.0182	0.0015779	3.479	0.0018188	522.7843843276393	18.626	0.74176	18.47	18.197	18.939	-0.15637					27	14	2	0	0	0	0.70186	1	320	320		45.952	6.6991	1	142120	+		46377	19932	32137	32189	51825	51825					0.0311939439463913
LQALHRSGY	9	Unmodified	_LQALHRSGY_					0	0	0			REV__ENST00000592769.1_1_19:46201738-46202042:+|nuORF	REV__ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.78289	1043.55123	3.8537	0.0020146	-1.2505	-0.00065373	2.6032	0.0013609	522.7822673198543	18.411	0.53777	18.474	18.307	18.845	0.063309	0.00078518	-0.0035875	NaN	45.952	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11585	+		46378	19932	32137	32189							0.0311939439463913
LQALHRSGY	9	Unmodified	_LQALHRSGY_					0	0	0			REV__ENST00000592769.1_1_19:46201738-46202042:+|nuORF	REV__ENST00000592769.1_1_19:46201738-46202042:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.78289	1043.55123	2.6798	0.0014009	0.67892	0.00035493	3.3587	0.0017559	522.7830939897865	18.737	1.141	18.494	18.175	19.316	-0.24256	0.021344	-0.0015702	NaN	45.952	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102860	+		46379	19932	32137	32189							0.0311939439463913
LQALTDGALV	10	Unmodified	_LQALTDGALV_					0	0	0		ENST00000397299.8_1_15:42129277-42129514:+|nuORF	ENST00000397299.8_1_15:42129277-42129514:+|nuORF	ENST00000397299.8_1_15:42129277-42129514:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7875061035156	2	500.787307	999.560061	0.70283	0.00035197	-0.64824	-0.00032463	0.054595	2.734E-05	500.78668967533264	72.184	0.82362	72.193	71.953	72.777	0.0097733					35	20	2	0	0	0	0.59716	1	8729	8729		77.318	3.0625	1	4924000			46380	13591	32138	32190	51826	51826					0.06026323240428155
LQALVPERA	9	Unmodified	_LQALVPERA_					0	0	0			REV__nc|ENSG00000038358|Q6P2E9-2|EDC4;REV__ENST00000572067.1_1_16:67916382-67916877:+|nuORF	REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.6050720214844	2	498.795466	995.57638	-0.30826	-0.00015376	-0.62347	-0.00031098	-0.93173	-0.00046474	498.795194550622	56.541	0.43526	56.316	56.069	56.504	-0.2248					18	10	2	0	0	0	0.024466	1	6083	6083		31.53	7.0106	1	156730	+		46381	20077;35418	32139	32191	51827	51827					0.07841449197178463
LQAPLFGLFL	10	Unmodified	_LQAPLFGLFL_					0	0	0		OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant;ENSG00000150261|ENST00000279783|OR8K1	OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7796020507812	2	559.83406	1117.65357	-0.60473	-0.00033855	-2.3854	-0.0013355	-2.9902	-0.001674	560.3346373717461	60.312	0.44388	60.136	59.96	60.403	-0.1761					20	10	3	0	0	0	0.03519	1	6698	6698		35.618	5.1146	1	120790			46382	6131	32140	32192	51828	51828					0.09944667413515162
LQAPVLPSDL	10	Unmodified	_LQAPVLPSDL_					0	0	0		ENSG00000164729|ENST00000297307|SLC35G3	ENSG00000164729|ENST00000297307|SLC35G3	ENSG00000164729|ENST00000297307|SLC35G3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.276611328125	2	526.802957	1051.59136	0.22871	0.00012048	3.3989	0.0017906	3.6276	0.001911	527.3053948681521	94.452	0.7969	94.329	94.016	94.813	-0.12215					25	18	2	0	0	0	0.03519	1	11657	11657		31.53	0	1	83829			46383	7312	32141	32193	51829	51829					0.06762896274517516
LQAQIRAQLE	10	Unmodified	_LQAQIRAQLE_					0	0	0			REV__ENST00000467329.5_1_1:150300781-150316915:+|nuORF	REV__ENST00000467329.5_1_1:150300781-150316915:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8036499023438	2	585.335487	1168.65642	-0.9176	-0.0005371	0.11457	6.7061E-05	-0.80303	-0.00047004	585.3349316882833	53.821	0.34303	53.576	53.49	53.833	-0.2453					13	10	2	0	0	0	0.03519	1	5694	5694		40.778	0.20554	1	271200	+		46384	22340	32142	32194	51830	51830					0.07883890800371773
LQAQLAAL	8	Unmodified	_LQAQLAAL_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.240478515625	2	414.252903	826.491253	-0.42815	-0.00017736	-0.11913	-4.9352E-05	-0.54729	-0.00022672	414.2530469605216	30.267	0.32589	30.267	30.017	30.343	0					10	7	2	0	0	0	0.027866	1	1915	1915		71.378	15.874	1	25043			46385	1939	32143	32195	51831	51831					0.07106703731381003
LQAQLAAL	8	Unmodified	_LQAQLAAL_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	414.252903	826.491253	-0.46442	-0.00019239	3.0125	0.0012479	2.548	0.0010555	414.253835600668	30.207	0.38449	29.963	29.737	30.122	-0.24415	-0.15198	0.001326	NaN	71.378	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12274			46386	1939	32143	32195							0.07106703731381003
LQAQRTEP	8	Unmodified	_LQAQRTEP_					0	0	0			REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7774963378906	2	471.753798	941.493044	-0.15879	-7.491E-05	0.82055	0.0003871	0.66175	0.00031218	471.7541749641402	29.549	0.74045	29.552	28.971	29.712	0.0031376					24	18	2	0	0	0	0.027866	1	1731	1731		53.351	0	1	90879	+		46387	23736	32144	32196	51832	51832					0.01995712749339873
LQAQRTEP	8	Unmodified	_LQAQRTEP_					0	0	0			REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.753798	941.493044	-0.87386	-0.00041225	1.2259	0.00057833	0.35205	0.00016608	471.754251964097	29.322	0.86245	29.077	28.578	29.44	-0.24524	-0.13511	0.0005348	NaN	53.351	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138260	+		46388	23736	32144	32196							0.01995712749339873
LQAREKCKPQ	10	Unmodified	_LQAREKCKPQ_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	401.871337890625	3	400.888768	1199.64448	0.14305	5.7345E-05	-2.6385	-0.0010578	-2.4955	-0.0010004	400.8876685461803	30.626	1.2965	30.634	30.082	31.378	0.0086708					80	30	5	0	0	0	0.03519	1	2002	2002		25.126	0.89417	1	2037300			46389	2008	32145	32197	51833	51833					0.05263950785547422
LQARLEEARQ	10	Unmodified	_LQARLEEARQ_					0	0	0			REV__nc|ENSG00000105357|Q7Z406|MYH14	REV__nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	405.226438	1212.65748	-1.0256	-0.0004156	0.91037	0.00036891	-0.11521	-4.6688E-05	405.2265591391637	26.437	0.14527	26.274	26.199	26.344	-0.16331					6	3	2	0	0	0	0.03519	1	1353	1353		23.378	0	1	77987	+		46390	21516	32146	32198	51834	51834					0.059661051692728506
LQARLRGF	8	Unmodified	_LQARLRGF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2652893066406	2	480.790518	959.566484	-0.41569	-0.00019986	1.8435	0.00088633	1.4278	0.00068648	480.7911080227302	29.22	0.98198	29.223	29.055	30.036	0.0031357					49	24	3	0	0	0	0.027866	1	1754	1754		19.36	0	1	517860			46391	9286	32147	32199	51835	51835					0.085083059824683
LQAVEENIY	9	Unmodified	_LQAVEENIY_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MSMS	OPSCC_40_ClassI_Rep-3	6	539.7742919921875	2	539.774396	1077.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.028	1	76.862	76.362	77.362	-0.16521								0	0	0	0.39148	1	9148	9148		62.107	0	1				46392	3803	32148	32200	51836	51836					-0.0014257100183385774
LQAVGQIF	8	Unmodified	_LQAVGQIF_					0	0	0		ENST00000549537.6_2_12:112371794-112450827:-|nuORF;ENST00000552801.6_1_12:112371805-112450827:-|nuORF;ENST00000548283.6_1_12:112374453-112450904:-|nuORF;ENSG00000198270|ENST00000552374|TMEM116	ENST00000549537.6_2_12:112371794-112450827:-|nuORF	ENST00000549537.6_2_12:112371794-112450827:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.9007263183594	2	438.252903	874.491253	0.25509	0.0001118	-3.2123	-0.0014078	-2.9572	-0.001296	438.2513323334529	18.777	0.43994	18.646	18.401	18.841	-0.13148					14	8	2	0	0	0	0.027866	1	291	291		26.796	6.3143	1	28381			46393	10116	32149	32201	51837	51837					0.04898703731373644
LQAVGQIF	8	Unmodified	_LQAVGQIF_					0	0	0		ENST00000549537.6_2_12:112371794-112450827:-|nuORF;ENST00000552801.6_1_12:112371805-112450827:-|nuORF;ENST00000548283.6_1_12:112374453-112450904:-|nuORF;ENSG00000198270|ENST00000552374|TMEM116	ENST00000549537.6_2_12:112371794-112450827:-|nuORF	ENST00000549537.6_2_12:112371794-112450827:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	438.252903	874.491253	2.4653	0.0010804	-5.4	-0.0023666	-2.9347	-0.0012861	438.2505105577265	18.58	0.44046	18.58	18.333	18.774	0	-0.12247	-0.00043934	NaN	26.796	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32977			46394	10116	32149	32201							0.04898703731373644
LQAVGQIF	8	Unmodified	_LQAVGQIF_					0	0	0		ENST00000549537.6_2_12:112371794-112450827:-|nuORF;ENST00000552801.6_1_12:112371805-112450827:-|nuORF;ENST00000548283.6_1_12:112374453-112450904:-|nuORF;ENSG00000198270|ENST00000552374|TMEM116	ENST00000549537.6_2_12:112371794-112450827:-|nuORF	ENST00000549537.6_2_12:112371794-112450827:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	438.252903	874.491253	3.7456	0.0016415	-6.4521	-0.0028276	-2.7064	-0.0011861	438.2499567023184	18.819	0.49168	18.882	18.698	19.189	0.063307	0.17963	-0.0013615	NaN	26.796	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47254			46395	10116	32149	32201							0.04898703731373644
LQAVTKCN	8	Unmodified	_LQAVTKCN_					0	0	0		ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENST00000449567.6_1_11:24518651-24807587:+|nuORF	ENST00000449567.6_1_11:24518651-24807587:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2235107421875	2	438.73402	875.453487	-0.26847	-0.00011779	-0.92462	-0.00040566	-1.1931	-0.00052345	438.73457526123616	25.996	0.2607	25.996	25.823	26.083	0					6	5	2	0	0	0	0.027866	1	1275	1275		20.947	0	1	15131			46396	14500	32150	32202	51838	51838					0.01077869474261206
LQAWMTRMC	9	Unmodified	_LQAWMTRMC_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2675170898438	2	570.261565	1138.50858	-0.10278	-5.8611E-05	1.9174	0.0010934	1.8146	0.0010348	570.2627748830694	65.887	0.62187	65.645	65.167	65.789	-0.24145					24	14	2	0	0	0	0.024487	1	7485	7485		31.955	17.09	1	193440			46397	4411	32151	32203	51839	51839					-0.05513783321111987
LQAYPGPAL	9	Unmodified	_LQAYPGPAL_					0	0	0		nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2583312988281	2	465.258185	928.501818	2.3433	0.0010903	-2.7755	-0.0012913	-0.43218	-0.00020108	465.2564761462014	63.637	0.93318	63.691	63.41	64.343	0.054104					60	25	4	0	0	0	0.36105	1	7383	7383		68.485	2.0554	1	3270200			46398	18164	32152	32204	51840	51840					0.034706863857991266
LQAYPGPAL	9	Unmodified	_LQAYPGPAL_					0	0	0		nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	nc|ENSG00000108846|O15438-3|ABCC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.258185	928.501818	0.21064	9.8001E-05	-0.0079631	-3.7049E-06	0.20268	9.4296E-05	465.2579813022683	63.935	0.75867	63.683	63.372	64.13	-0.25141	0.015276	0.00031592	NaN	68.485	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3129100			46399	18164	32152	32204							0.034706863857991266
LQCAQLGTP	9	Unmodified	_LQCAQLGTP_					0	0	0			REV__ENST00000559124.1_1_14:102963896-102964591:+|nuORF	REV__ENST00000559124.1_1_14:102963896-102964591:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.75384521484375	2	465.739302	929.464052	-0.63555	-0.000296	-2.2271	-0.0010373	-2.8627	-0.0013333	465.73818389094197	23.64	0.1282	23.64	23.566	23.694	0					4	2	2	0	0	0	0.024381	1	953	953		29.15	11.785	1	18000	+		46400	35111	32153	32205	51841	51841					-0.0035014787131331104
LQCESSSGTE	10	Unmodified	_LQCESSSGTE_					0	0	0		ENST00000527977.5_1_11:122953793-122955421:-|nuORF;ENSG00000166250|ENST00000448775|CLMP	ENST00000527977.5_1_11:122953793-122955421:-|nuORF	ENST00000527977.5_1_11:122953793-122955421:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2640380859375	2	520.713679	1039.4128	0.47856	0.00024919	-3.9468	-0.0020552	-3.4683	-0.001806	520.7113707647501	57.281	0.28696	57.079	56.996	57.283	-0.20208					9	7	2	0	0	0	0.03519	1	6259	6259		26.693	3.6504	1	72116			46401	7529	32154	32206	51842	51842					-0.10532561426657594
LQCGANWY	8	Unmodified	_LQCGANWY_					0	0	0			REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;REV__nc|ENSG00000114805|Q4KWH8|PLCH1	REV__nc|ENSG00000114805|Q4KWH8|PLCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.2560729980469	2	477.710545	953.406537	-0.40682	-0.00019434	3.1106	0.001486	2.7038	0.0012916	477.71198873977215	41.835	0.5256	41.603	41.311	41.837	-0.23186					28	13	3	0	0	0	0.027866	1	3709	3709		38.806	1.647	1	389560	+		46402	22146;36582	32155	32207	51843	51843					-0.0720299007690528
LQCKLDEND	9	Unmodified	_LQCKLDEND_					0	0	0			REV__ENSG00000214338|ENST00000525778|SOGA3	REV__ENSG00000214338|ENST00000525778|SOGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2953491210938	2	539.247689	1076.48082	-1.2888	-0.00069497	-1.2397	-0.00066852	-2.5285	-0.0013635	539.2467058023092	81.398	1.6211	81.256	80.161	81.782	-0.14249					61	38	3	0	0	0	0.024511	1	9711	9711		25.574	9.1009	1	408650	+		46403	28776	32156	32208	51844	51844					-0.054356917760287615
LQCMFFSDL	9	Unmodified	_LQCMFFSDL_					0	0	0			REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3	REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.311767578125	2	552.248646	1102.48274	-0.041006	-2.2645E-05	0.97544	0.00053869	0.93443	0.00051604	552.2487831352842	32.178	0.51896	31.941	31.697	32.216	-0.23666					24	11	3	0	0	0	0.024523	1	2201	2201		29.15	9.1528	1	293250	+		46404	37160	32157	32209	51845	51845					-0.06440354291771655
LQDDIQNRA	9	Unmodified	_LQDDIQNRA_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7977294921875	2	536.772719	1071.53089	-0.75385	-0.00040464	2.4184	0.0012981	1.6646	0.00089349	536.7749107705715	65.97	0.19168	66	65.89	66.082	0.030098					6	4	2	0	0	0	0.021513	1	7751	7751		82.241	0	1	83580			46405	4256;18250	32158	32210	51846	51846					-0.002018210558617284
LQDDTLKSI	9	Unmodified	_LQDDTLKSI_					0	0	0			REV__ENSG00000068912|ENST00000185150|ERLEC1	REV__ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.78564453125	2	516.782222	1031.54989	-0.38774	-0.00020038	4.0664	0.0021014	3.6787	0.0019011	516.7842608322572	94.056	1.8442	94.056	93.499	95.343	-0.00022888					113	43	5	0	0	0	0.15388	1	11959	11959		98.582	10.405	1	6488700	+		46406	20391	32159	32211	51847	51847					0.035377155151991246
LQDEEIAPL	9	Unmodified	_LQDEEIAPL_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.2982788085938	2	514.268947	1026.52334	-0.95947	-0.00049343	2.7472	0.0014128	1.7878	0.00091939	514.27065338267	34.934	0.68048	34.984	34.518	35.198	0.050255					22	17	2	0	0	0	0.024294	1	2596	2596		45.952	0	1	169870	+		46407	26994	32160	32212	51848	51848					0.011140266238498953
LQDEILIHEE	10	Unmodified	_LQDEILIHEE_					0	0	0		ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000198062|ENST00000343518|POTEH	ENSG00000222036|ENST00000547889|POTEM	ENSG00000222036|ENST00000547889|POTEM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.7532958984375	3	413.546954	1237.61903	-0.5166	-0.00021364	3.2825	0.0013574	2.7658	0.0011438	413.5484886478524	22.87	0.91166	22.685	22.325	23.237	-0.18539					35	19	3	0	0	0	0.03519	1	799	799		32.751	19.793	1	63131			46408	9633	32161	32213	51849	51849					0.009727547441116258
LQDEILIHEE	10	Unmodified	_LQDEILIHEE_					0	0	0		ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000198062|ENST00000343518|POTEH	ENSG00000222036|ENST00000547889|POTEM	ENSG00000222036|ENST00000547889|POTEM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	413.546954	1237.61903	0.30988	0.00012815	2.7116	0.0011214	3.0215	0.0012495	413.5482770910433	22.65	0.69481	22.461	22.191	22.886	-0.18894	-0.11209	-0.00031285	NaN	32.751	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48160			46409	9633	32161	32213							0.009727547441116258
LQDEKYWSRRY	11	Unmodified	_LQDEKYWSRRY_					0	0	0		ENST00000594723.1_1_19:49134096-49134354:-|nuORF	ENST00000594723.1_1_19:49134096-49134354:-|nuORF	ENST00000594723.1_1_19:49134096-49134354:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7998657226562	3	515.259918	1542.75793	-0.19016	-9.7984E-05	-0.2287	-0.00011784	-0.41886	-0.00021582	515.2597881329573	45.957	0.78367	45.696	45.416	46.2	-0.26118					44	20	3	0	0	0	0.024856	1	4339	4339		5.6988	0	1	920630			46410	17411	32162	32214	51850	51850					0.008257174322579885
LQDGHHTL	8	Unmodified	_LQDGHHTL_					0	0	0		ENST00000407780.7_1_21:45645778-45646036:-|nuORF	ENST00000407780.7_1_21:45645778-45646036:-|nuORF	ENST00000407780.7_1_21:45645778-45646036:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.7328796386719	2	460.732866	919.451179	2.1532	0.00099205	-2.2319	-0.0010283	-0.078702	-3.6261E-05	460.7316090377661	24.53	0.69572	24.349	24.072	24.767	-0.18089					37	15	4	0	0	0	0.24207	1	1045	1045		133.47	0	1	864950			46411	13752	32163	32215	51851	51851					-0.011768429391850077
LQDGNLRAP	9	Unmodified	_LQDGNLRAP_					0	0	0		ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	ENST00000514908.5_1_3:126423131-126653948:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7720947265625	2	492.267073	982.519593	1.3774	0.00067803	-0.9994	-0.00049197	0.37796	0.00018606	492.26625660966	37.134	1.1452	37.134	36.724	37.869	0					75	30	4	0	0	0	0.56934	1	2970	2970		54.776	0	1	12836000			46412	6761	32164	32216	51852	51852					0.027634016406636874
LQDGSVLLL	9	Unmodified	_LQDGSVLLL_					0	0	0		ENSG00000223573|ENST00000646160|TINCR	ENSG00000223573|ENST00000646160|TINCR	ENSG00000223573|ENST00000646160|TINCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.28460693359375	2	479.2844	956.554247	0.2172	0.0001041	0.12711	6.0921E-05	0.34431	0.00016502	479.2843057015421	90.127	1.8221	90.14	89.089	90.911	0.013443					83	43	4	0	0	0	0.31037	1	11309	11309		74.255	0.28031	1	1880000			46413	10641	32165	32217	51853	51853					0.07423224728779587
LQDIKLENQL	10	Unmodified	_LQDIKLENQL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.9066162109375	3	405.231077	1212.6714	0.75425	0.00030565	0.58042	0.0002352	1.3347	0.00054085	405.2312535593146	22.872	0.54022	22.872	22.665	23.206	0					35	11	4	0	0	0	0.03519	1	822	822		72.243	0	1	334540	+		46414	25256	32166	32218	51854	51854					0.07357337877715509
LQDINPAKV	9	Unmodified	_LQDINPAKV_					0	0	0			REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8034362792969	2	499.287474	996.560395	-0.49924	-0.00024926	0.46172	0.00023053	-0.037517	-1.8732E-05	499.28741990548934	53.808	0.92159	53.661	53.132	54.054	-0.14723					54	25	3	0	0	0	0.024288	1	5764	5764		36.447	8.3653	1	1321800	+		46415	30379	32167	32219	51855	51855					0.06197742960284813
LQDINPAKV	9	Unmodified	_LQDINPAKV_					0	0	0			REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.287474	996.560395	-0.9554	-0.00047702	1.05	0.00052424	0.094578	4.7221E-05	499.2877647080818	53.709	0.51798	53.573	53.319	53.837	-0.13617	-0.057573	0.00064818	NaN	36.447	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368820	+		46416	30379	32167	32219							0.06197742960284813
LQDINPAKV	9	Unmodified	_LQDINPAKV_					0	0	0			REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.287474	996.560395	-0.1714	-8.5579E-05	0.32795	0.00016374	0.15654	7.816E-05	499.28735291613395	53.852	0.78661	53.607	53.163	53.949	-0.2453	-0.023111	-7.2827E-05	NaN	36.447	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402960	+		46417	30379	32167	32219							0.06197742960284813
LQDINPAKV	9	Unmodified	_LQDINPAKV_					0	0	0			REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	REV__ENST00000324799.4_1_X:148606549-148607579:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.287474	996.560395	-0.62902	-0.00031406	0.89599	0.00044736	0.26698	0.0001333	499.28751361281206	53.805	0.40491	53.608	53.422	53.827	-0.19739	-0.022037	0.00049441	NaN	36.447	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352660	+		46418	30379	32167	32219							0.06197742960284813
LQDLATNEV	9	Unmodified	_LQDLATNEV_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.80072021484375	2	501.758746	1001.50294	-0.97684	-0.00049014	4.3663	0.0021908	3.3894	0.0017007	501.76091187388846	46.522	0.30563	46.369	46.208	46.514	-0.15301					15	8	2	0	0	0	0.024438	1	4558	4558		36.447	17.087	1	62992			46419	10506	32168	32220	51856	51856					0.002248559640520398
LQDLKEQI	8	Unmodified	_LQDLKEQI_					0	0	0		ENST00000579654.1_1_17:26771636-26772354:-|nuORF	ENST00000579654.1_1_17:26771636-26772354:-|nuORF	ENST00000579654.1_1_17:26771636-26772354:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7793273925781	2	493.779482	985.544411	0.052927	2.6134E-05	-0.56186	-0.00027744	-0.50893	-0.0002513	493.77931769956535	50.008	0.70278	49.857	49.52	50.223	-0.1512					39	19	3	0	0	0	0.078056	1	5163	5163		166.68	0	1	7039100			46420	17142	32169	32221	51857	51857					0.05106036723384477
LQDLMEKVM	9	Oxidation (M)	_LQDLMEKVM(Oxidation (M))_		LQDLM(0.001)EKVM(0.999)		LQDLM(-31)EKVM(31)	0	0	1		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;ENST00000484848.5_1_10:102255105-102258991:-|nuORF	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.784423828125	2	561.78031	1121.54607	-0.49648	-0.00027891	4.2201	0.0023707	3.7236	0.0020918	561.7826928146108	47.026	2.3886	46.832	45.938	48.327	-0.19387					184	65	5	0	0	0	0.76818	1	4469	4469		41.427	6.2746	2	24966000			46421	1571	32170	32222	51858	51858		54			-0.009844135745424865
LQDMCEDY	8	Unmodified	_LQDMCEDY_					0	0	0		ENSG00000198920|ENST00000361413|KIAA0753;nc|ENSG00000198920|Q2KHM9-2|KIAA0753	ENSG00000198920|ENST00000361413|KIAA0753	ENSG00000198920|ENST00000361413|KIAA0753	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80291748046875	2	508.688618	1015.36268	0.33172	0.00016874	3.7872	0.0019265	4.1189	0.0020953	508.69049120027245	36.994	0.22966	36.801	36.697	36.927	-0.193					7	5	2	0	0	0	0.027866	1	2938	2938		65.803	4.8312	1	78025			46422	10252	32171	32223	51859	51859					-0.14438387356187832
LQDNRAVE	8	Unmodified	_LQDNRAVE_					0	0	0			REV__ENST00000481597.5_1_3:50356335-50357944:-|nuORF	REV__ENST00000481597.5_1_3:50356335-50357944:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7555236816406	2	472.743431	943.472308	0.073591	3.479E-05	3.5968	0.0017004	3.6704	0.0017352	472.7455244001425	43.19	0.69413	43.051	42.809	43.503	-0.13929					33	18	2	0	0	0	0.027866	1	3980	3980		84.916	24.797	1	226470	+		46423	20370	32172	32224	51860	51860					-0.001688776303353734
LQDPSHLTP	9	Unmodified	_LQDPSHLTP_					0	0	0		ENST00000565460.1_1_16:68289553-68293557:+|nuORF	ENST00000565460.1_1_16:68289553-68293557:+|nuORF	ENST00000565460.1_1_16:68289553-68293557:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2715759277344	2	504.261456	1006.50836	0.063298	3.1919E-05	-1.4765	-0.00074455	-1.4132	-0.00071263	504.76148835913807	57.217	0.72778	57.052	56.78	57.508	-0.16431					24	19	2	0	0	0	0.024457	1	6422	6422		15.642	0	1	251180			46424	16919	32173	32225	51861	51861					0.005365795465081646
LQDQADILY	9	Unmodified	_LQDQADILY_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.77490234375	2	539.774396	1077.53424	0.4151	0.00022406	-0.046342	-2.5014E-05	0.36876	0.00019905	539.7742232686568	77.252	0.86641	77.01	76.666	77.532	-0.24232					37	21	2	0	0	0	0.13494	1	9191	9191		102.77	20.468	1	1835000			46425	1091	32174	32226	51862	51862					-0.0014257100183385774
LQDQLAIQRAK	11	Unmodified	_LQDQLAIQRAK_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	642.8406372070312	2	642.375143	1282.73573	-1.5786	-0.0010141	0.39254	0.00025216	-1.1861	-0.00076189	642.3753222911195	86.082	1.4611	85.89	85.347	86.808	-0.19252					50	33	2	0	0	0	0.024745	1	10529	10529		33.922	4.7516	1	74261	+		46426	21154	32175	32227	51863	51863					0.10567537754491241
LQDQLAIQRAK	11	Unmodified	_LQDQLAIQRAK_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	642.375143	1282.73573	0.70321	0.00045172	-1.8539	-0.0011909	-1.1507	-0.00073915	642.3741613569587	86.092	1.0772	85.95	85.417	86.495	-0.14217	0.0052445	-0.001595	NaN	47.96	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62664	+		46427	21154	32175	32227							0.10567537754491241
LQDQLAIQRAK	11	Unmodified	_LQDQLAIQRAK_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	642.375143	1282.73573	-0.17657	-0.00011342	-0.59639	-0.00038311	-0.77296	-0.00049653	642.3747902601446	86.131	1.3327	85.994	85.198	86.53	-0.13734	0.049296	2.0522E-05	NaN	47.96	41	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90913	+		46428	21154	32175	32227							0.10567537754491241
LQDRRSGM	8	Unmodified	_LQDRRSGM_					0	0	0		ENST00000542575.6_2_19:47278508-47278697:-|nuORF	ENST00000542575.6_2_19:47278508-47278697:-|nuORF	ENST00000542575.6_2_19:47278508-47278697:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.27691650390625	2	481.74545	961.476348	0.11566	5.5718E-05	-2.039	-0.0009823	-1.9234	-0.00092658	481.74440562288737	24.493	0.54976	24.571	24.364	24.914	0.078344					20	11	2	0	0	0	0.027866	1	1031	1031		38.806	0	1	88926			46429	16459	32176	32228	51864	51864					-0.005931114082500244
LQDTFSSIL	9	Unmodified	_LQDTFSSIL_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2731323242188	2	512.27149	1022.52843	-0.43673	-0.00022373	3.3623	0.0017224	2.9256	0.0014987	512.273033103101	46.137	1.0081	46.188	45.864	46.873	0.051395					75	28	4	0	0	0	0.17845	1	4478	4478		93.143	2.5424	1	2691000	+		46430	21747	32177	32229	51865	51865					0.018063304864881502
LQDTFSSIL	9	Unmodified	_LQDTFSSIL_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.27149	1022.52843	-0.23069	-0.00011817	3.108	0.0015921	2.8773	0.001474	512.27289541985	46.145	0.77182	46.145	45.852	46.623	0	0.0073031	-0.00036699	NaN	93.143	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2425500	+		46431	21747	32177	32229							0.018063304864881502
LQDTFSSIL	9	Unmodified	_LQDTFSSIL_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.27149	1022.52843	-1.0872	-0.00055694	3.9864	0.0020421	2.8992	0.0014852	512.273355719844	46.232	1.1029	46.08	45.756	46.859	-0.15156	-0.057445	0.00053297	NaN	93.143	67	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2220000	+		46432	21747	32177	32229							0.018063304864881502
LQDTFSSIL	9	Unmodified	_LQDTFSSIL_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	512.27149	1022.52843	-0.43673	-0.00022373	3.3623	0.0017224	2.9256	0.0014987	512.273033103101	46.137	1.0081	46.188	45.864	46.873	0.051395	0.050142	-0.00010644	NaN	93.143	75	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2691000	+		46433	21747	32177	32229							0.018063304864881502
LQDTVKTIQ	9	Unmodified	_LQDTVKTIQ_					0	0	0			REV__ENST00000462032.1_1_1:29424324-29436027:+|nuORF	REV__ENST00000462032.1_1_1:29424324-29436027:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2992553710938	2	523.298039	1044.58152	-0.98948	-0.00051779	-1.0491	-0.00054898	-2.0386	-0.0010668	523.29775160659	51.773	1.8883	51.86	51.264	53.152	0.087006					123	50	4	0	0	0	0.03201	1	5470	5470		139.97	17.794	1	22616000	+		46434	32891	32178	32230	51866	51866					0.06101708269147821
LQDVLLQQ	8	Unmodified	_LQDVLLQQ_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2906494140625	2	478.7742	955.533846	-0.1364	-6.5304E-05	-0.0008449	-4.0451E-07	-0.13724	-6.5709E-05	478.77408040077114	46.807	0.91656	46.654	46.172	47.089	-0.15301					43	24	3	0	0	0	0.027866	1	4696	4696		24.203	0	1	1666700	+		46435	25841	32179	32231	51867	51867					0.05430054068960999
LQDVRSHMNV	10	Unmodified	_LQDVRSHMNV_					0	0	0			REV__nc|ENSG00000101204|P43681-2|CHRNA4	REV__nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.2038269042969	3	400.204757	1197.59244	0.13073	5.2317E-05	-1.6412	-0.00065682	-1.5105	-0.00060451	400.203701291754	25.724	1.2487	25.497	24.708	25.957	-0.22683					82	29	5	0	0	0	0.98044	1	1236	1236		48.602	2.1448	1	3056700	+		46436	21200	32180	32232	51868	51868					0.001547873717981929
LQDVSSYWTT	10	Unmodified	_LQDVSSYWTT_					0	0	0			REV__ENSG00000157224|ENST00000496677|CLDN12	REV__ENSG00000157224|ENST00000496677|CLDN12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.886474609375	3	400.524149	1198.55062	0.42	0.00016822	-2.8533	-0.0011428	-2.4333	-0.00097459	400.5228826577183	54.681	0.36943	54.535	54.316	54.686	-0.14609					15	9	2	0	0	0	0.03519	1	5844	5844		12.957	1.0251	1	89297	+		46437	25121	32181	32233	51869	51869					-0.040714898357464335
LQDYCKEPL	9	Unmodified	_LQDYCKEPL_					0	0	0			REV__nc|ENSG00000129255|O75352-2|MPDU1;REV__ENST00000572836.5_1_17:7487180-7490759:+|nuORF	REV__nc|ENSG00000129255|O75352-2|MPDU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.8035888671875	2	554.7708	1107.52705	0.13637	7.5657E-05	-0.39483	-0.00021904	-0.25846	-0.00014338	554.7703332499067	53.74	1.3901	53.835	53.556	54.946	0.095669					65	39	2	0	0	0	0.024477	1	5941	5941		20.947	0	1	442860	+		46438	36650;23041	32182	32234	51870	51870					-0.022416268739334555
LQEARRVD	8	Unmodified	_LQEARRVD_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3072814941406	2	493.772522	985.530492	-0.12266	-6.0569E-05	2.5651	0.0012666	2.4424	0.001206	493.77382084093136	100.84	0.34658	100.85	100.7	101.05	0.0090332					12	7	2	0	0	0	0.027866	1	12883	12883		31.955	8.9124	1	155910	+		46439	26629	32183	32235	51871	51871					0.03714804014953188
LQEAVAGYL	9	Unmodified	_LQEAVAGYL_					0	0	0			REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF	REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2600402832031	2	482.260925	962.507297	-0.42737	-0.0002061	0.89587	0.00043204	0.46849	0.00022594	482.26118828518383	66.431	1.3233	66.461	66.237	67.56	0.030106					88	35	3	0	0	0	0.43973	1	7817	7817		63.306	7.8021	1	3955500	+		46440	25013	32184	32236	51872	51872					0.02454365177618456
LQEDEPEND	9	Unmodified	_LQEDEPEND_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8197631835938	2	544.722558	1087.43056	-0.72557	-0.00039523	3.8469	0.0020955	3.1213	0.0017003	544.7244804556066	47.553	1.8497	47.4	46.514	48.363	-0.15301					79	52	2	0	0	0	0.024389	1	4820	4820		35.152	0	1	355720			46441	3330	32185	32237	51873	51873					-0.10965522900164615
LQEDQRKW	8	Unmodified	_LQEDQRKW_					0	0	0			REV__ENST00000323146.7_1_5:139946353-139946686:+|nuORF	REV__ENST00000323146.7_1_5:139946353-139946686:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3475341796875	2	551.78563	1101.55671	-0.41069	-0.00022661	0.29368	0.00016205	-0.11701	-6.4564E-05	551.7857167681917	32.273	0.75463	32.116	31.569	32.323	-0.15772					30	17	3	0	0	0	0.027866	1	2148	2148		42.396	4.5846	1	271770	+		46442	30370	32186	32238	51874	51874					0.00999073186426358
LQEDTNETA	9	Unmodified	_LQEDTNETA_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7287902832031	2	510.727643	1019.44073	-0.23811	-0.00012161	1.2082	0.00061708	0.97014	0.00049548	510.72801201804344	55.098	1.1643	54.948	54.507	55.672	-0.15036					68	32	3	0	0	0	0.35646	1	6027	6027		68.787	2.9837	1	7634200	+		46443	25715	32187	32239	51875	51875					-0.06820915174955644
LQEHLIKGW	9	Unmodified	_LQEHLIKGW_					0	0	0			REV__ENSG00000132554|ENST00000360863|RGS22	REV__ENSG00000132554|ENST00000360863|RGS22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2687377929688	2	562.316566	1122.61858	0.24438	0.00013742	3.0968	0.0017414	3.3412	0.0018788	562.3197360288528	79.693	0.49905	79.474	79.202	79.701	-0.21923					22	11	3	0	0	0	0.024523	1	9523	9523		15.642	0	1	108480	+		46444	23291	32188	32240	51876	51876					0.06217424605574706
LQEHVLLQP	9	Unmodified	_LQEHVLLQP_					0	0	0			REV__ENST00000357387.7_1_5:38942191-38942296:-|nuORF	REV__ENST00000357387.7_1_5:38942191-38942296:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2962646484375	2	538.808574	1075.60259	-1.3159	-0.00070902	0.76411	0.00041171	-0.55179	-0.00029731	538.8092036497933	57.688	0.44109	57.783	57.647	58.088	0.09531					16	11	2	0	0	0	0.024457	1	6459	6459		21.96	0	1	572500	+		46445	30830	32189	32241	51877	51877					0.06781718368665679
LQEKKRELKNE	11	Unmodified	_LQEKKRELKNE_					0	0	0		ENSG00000185250|ENST00000521072|PPIL6;nc|ENSG00000185250|Q8IXY8-2|PPIL6	ENSG00000185250|ENST00000521072|PPIL6	ENSG00000185250|ENST00000521072|PPIL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.27166748046875	3	472.271935	1413.79398	0.15094	7.1286E-05	0.61933	0.00029249	0.77027	0.00036378	472.2721847837972	18.187	0.49543	17.983	17.766	18.262	-0.20409					21	9	3	0	0	0	1.044	1	265	265		26.75	4.9693	1	69567			46446	9421	32190	32242	51878	51878					0.10363174609119596
LQEKTLLPL	9	Unmodified	_LQEKTLLPL_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7640991210938	2	527.828975	1053.6434	0.11503	6.0716E-05	-0.21043	-0.00011107	-0.095403	-5.0357E-05	527.828626276019	92.648	1.0165	92.506	92.25	93.267	-0.14131					42	23	3	0	0	0	0.024539	1	11433	11433		14.865	0	1	309170	+		46447	23271	32191	32243	51879	51879					0.11872059688289482
LQELPKFPK	9	Unmodified	_LQELPKFPK_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2891235351562	2	550.329142	1098.64373	-1.164	-0.00064057	-3.3662	-0.0018525	-4.5301	-0.0024931	550.3269562425814	48.585	0.4251	48.309	48.08	48.505	-0.27598					19	11	2	0	0	0	0.024527	1	4777	4777		39.253	15.05	1	270440	+		46448	20831	32192	32244	51880	51880					0.09835479408138781
LQELQQEKEE	10	Unmodified	_LQELQQEKEE_					0	0	0		nc|ENSG00000185515|P46736-4|BRCC3;ENST00000453705.1_3_X:154299864-154348422:+|nuORF;ENSG00000185515|ENST00000330045|BRCC3;nc|ENSG00000185515|P46736-3|BRCC3;nc|ENSG00000185515|P46736|BRCC3;nc|ENSG00000185515|P46736-5|BRCC3	nc|ENSG00000185515|P46736-4|BRCC3	nc|ENSG00000185515|P46736-4|BRCC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.1930847167969	3	425.213863	1272.61976	-0.26997	-0.0001148	4.4203	0.0018796	4.1503	0.0017648	425.54921517760664	34.569	0.20338	34.394	34.21	34.413	-0.17557					6	4	2	0	0	0	0.03519	1	2525	2525		48.602	29.635	1	28730			46449	9447	32193	32245	51881	51881					-0.0056445060683927295
LQELVDQLY	9	Unmodified	_LQELVDQLY_					0	0	0		ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20763469-20774096:-|nuORF;ENST00000557379.1_1_14:20768687-20774096:-|nuORF	ENSG00000136319|ENST00000258821|TTC5	ENSG00000136319|ENST00000258821|TTC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.7973022460938	2	560.797872	1119.58119	-0.86745	-0.00048647	0.26238	0.00014714	-0.60507	-0.00033932	560.7979071154483	55.35	0.85149	55.204	54.837	55.688	-0.14609					82	23	6	0	0	0	0.31037	1	5910	5910		74.255	7.8258	1	12824000			46450	5009	32194	32246	51882	51882					0.026182885492971764
LQELVDQLY	9	Unmodified	_LQELVDQLY_					0	0	0		ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20763469-20774096:-|nuORF;ENST00000557379.1_1_14:20768687-20774096:-|nuORF	ENSG00000136319|ENST00000258821|TTC5	ENSG00000136319|ENST00000258821|TTC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7973022460938	2	560.797872	1119.58119	-0.1748	-9.8029E-05	-0.4709	-0.00026408	-0.6457	-0.00036211	560.7975138554705	55.454	0.76175	55.223	54.891	55.653	-0.23087					75	21	6	0	0	0	0.16468	1	5938	5938		96.19	11.275	1	13792000			46451	5009	32194	32246	51883	51883					0.026182885492971764
LQELVDQLY	9	Unmodified	_LQELVDQLY_					0	0	0		ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20763469-20774096:-|nuORF;ENST00000557379.1_1_14:20768687-20774096:-|nuORF	ENSG00000136319|ENST00000258821|TTC5	ENSG00000136319|ENST00000258821|TTC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.7978515625	2	560.797872	1119.58119	-0.61196	-0.00034319	-0.015811	-8.8669E-06	-0.62777	-0.00035205	560.7977866483347	55.432	0.81594	55.217	54.857	55.673	-0.21551					84	22	6	0	0	0	0.14024	1	5921	5921		101.6	7.5943	1	14876000			46452	5009	32194	32246	51884	51884					0.026182885492971764
LQENVKDKL	9	Unmodified	_LQENVKDKL_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.7991943359375	2	543.811313	1085.60807	-0.19106	-0.0001039	3.8284	0.0020819	3.6374	0.001978	543.8134735808659	71.958	0.68681	71.67	71.113	71.8	-0.28858					23	17	2	0	0	0	0.024181	1	8710	8710		63.534	13.998	1	472680			46453	4892	32195	32247	51885	51885					0.06869397160448898
LQEPKAGR	8	Unmodified	_LQEPKAGR_					0	0	0		ENST00000375140.7_1_11:119064239-119066706:-|nuORF	ENST00000375140.7_1_11:119064239-119066706:-|nuORF	ENST00000375140.7_1_11:119064239-119066706:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.28509521484375	2	449.758884	897.503215	-0.39648	-0.00017832	-0.1108	-4.9834E-05	-0.50728	-0.00022815	449.7587502876742	35.117	0.5872	35.161	34.794	35.381	0.044056					34	15	3	0	0	0	0.027866	1	2563	2563		60.972	16.855	1	332960			46454	13151	32196	32248	51886	51886					0.05036320474562217
LQEPKQFSC	9	Unmodified	_LQEPKQFSC_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.7886352539062	2	540.263142	1078.51173	-0.13325	-7.1991E-05	0.21183	0.00011444	0.078578	4.2453E-05	540.2628060813543	47.185	0.56647	47.032	46.698	47.265	-0.15301					31	14	4	0	0	0	0.024261	1	4647	4647		54.776	12.38	1	646040	+		46455	26290	32197	32249	51887	51887					-0.024384936711157934
LQEPRLFLGL	10	Unmodified	_LQEPRLFLGL_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.288330078125	2	593.353148	1184.69174	-0.75228	-0.00044637	0.13666	8.1087E-05	-0.61562	-0.00036528	593.3530970798524	54.702	0.52988	54.471	54.181	54.711	-0.23087					37	14	4	0	0	0	0.03519	1	5794	5794		27.882	0	1	1141400			46456	762	32198	32250	51888	51888					0.10678553328170892
LQEQTRPKPE	10	Unmodified	_LQEQTRPKPE_					0	0	0		ENSG00000130956|ENST00000375249|HABP4;nc|ENSG00000130956|Q5JVS0-2|HABP4	ENSG00000130956|ENST00000375249|HABP4	ENSG00000130956|ENST00000375249|HABP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2474670410156	3	409.222693	1224.64625	0.67471	0.00027611	0.78758	0.0003223	1.4623	0.0005984	409.2218194905253	37.624	0.18868	37.656	37.563	37.751	0.032269					6	4	2	0	0	0	0.03519	1	3017	3017		15.921	0	1	16945			46457	4478	32199	32251	51889	51889					0.0429128307512201
LQERASEA	8	Unmodified	_LQERASEA_					0	0	0			REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2301025390625	2	452.230156	902.445759	-0.23433	-0.00010597	-0.24529	-0.00011093	-0.47962	-0.0002169	452.23007874856705	26.82	1.3423	26.807	26.537	27.88	-0.012983					52	34	2	0	0	0	0.35998	1	1377	1377		102.77	1.1726	1	6805100	+		46458	20337	32200	32252	51890	51890					-0.009365665216705565
LQERKIGIVQP	11	Unmodified	_LQERKIGIVQP_					0	0	0		ENST00000542165.1_1_11:94704505-94704637:-|nuORF	ENST00000542165.1_1_11:94704505-94704637:-|nuORF	ENST00000542165.1_1_11:94704505-94704637:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.74041748046875	3	427.59435	1279.76122	0.7065	0.00030209	0.15315	6.5486E-05	0.85965	0.00036758	427.59461552462045	22.211	0.46474	22.022	21.816	22.281	-0.18894					17	9	3	0	0	0	0.024734	1	785	785		21.78	0	1	38392			46459	16449	32201	32253	51891	51891					0.13253012276913978
LQERRLPKP	9	Unmodified	_LQERRLPKP_					0	0	0		CLUAP1|p.E329Q|1|0.31|ENSG00000103351|chr16:3530624-3530624|G/C|missense_variant	CLUAP1|p.E329Q|1|0.31|ENSG00000103351|chr16:3530624-3530624|G/C|missense_variant	CLUAP1|p.E329Q|1|0.31|ENSG00000103351|chr16:3530624-3530624|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.3131713867188	2	568.848564	1135.68258	-0.555	-0.00031571	-2.986	-0.0016986	-3.541	-0.0020143	568.8466127831966	76.711	0.80929	76.483	76.003	76.813	-0.22843					33	19	2	0	0	0	0.024487	1	9467	9467		17.365	0	1	156770			46460	457	32202	32254	51892	51892					0.12016204762494453
LQERRTLPQT	10	Unmodified	_LQERRTLPQT_					0	0	0			REV__ENSG00000075234|ENST00000381031|TTC38	REV__ENSG00000075234|ENST00000381031|TTC38	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3490600585938	2	621.351668	1240.68878	0.49653	0.00030852	-3.4244	-0.0021277	-2.9279	-0.0018192	621.3493597922452	102.98	0.43923	102.85	102.63	103.07	-0.12724					26	10	3	0	0	0	1.126	1	12810	12810		8.6937	5.2837	1	1207500	+		46461	20540	32203	32255	51893	51893					0.07806678203382944
LQETWCWH	8	Unmodified	_LQETWCWH_					0	0	0			REV__ENST00000267970.8_1_15:77338989-77339115:-|nuORF	REV__ENST00000267970.8_1_15:77338989-77339115:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7799072265625	2	551.742376	1101.4702	-0.93328	-0.00051493	0.43448	0.00023972	-0.4988	-0.00027521	551.7421395571935	45.314	0.19754	45.166	45.115	45.312	-0.1488					7	5	2	0	0	0	0.027866	1	4388	4388		25.45	0	1	92262	+		46462	29774	32204	32256	51894	51894					-0.07647629639791376
LQEVDNELKL	10	Unmodified	_LQEVDNELKL_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.8876037597656	3	400.887199	1199.63977	0.22682	9.0928E-05	1.1555	0.00046322	1.3823	0.00055415	400.88763169785403	30.722	1.0439	30.722	30.384	31.428	0					61	24	4	0	0	0	0.463	2	2001	1989;2001		92.239	11.323	1	2287900	+		46463	34422;26045	32205	32257	51895;51896	51896					0.04793345123744075
LQEVDNELKL	10	Unmodified	_LQEVDNELKL_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.88775634765625	3	400.887199	1199.63977	0.14305	5.7345E-05	1.2763	0.00051166	1.4194	0.000569	400.8876685461803	30.626	1.2965	30.634	30.082	31.378	0.0086708					80	30	5	0	0	0	0.44183	1	1961	1961		94.409	9.5918	1	2037300	+		46464	34422;26045	32205	32257	51897	51897					0.04793345123744075
LQEVVRKPRAS	11	Unmodified	_LQEVVRKPRAS_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8824462890625	2	641.883136	1281.75172	0.55581	0.00035677	-1.6557	-0.0010628	-1.0999	-0.00070601	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	1.0465	1	12232	12232		26.063	1.5442	1	3344500			46465	7764	32206	32258	51898	51898					0.12211243991418996
LQEVVRKPRAS	11	Unmodified	_LQEVVRKPRAS_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8829956054688	2	641.883136	1281.75172	0.76256	0.00048947	-1.8886	-0.0012122	-1.126	-0.00072277	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	0.9728	1	11761	11761		42.864	6.4175	1	3421300			46466	7764	32206	32258	51899	51899					0.12211243991418996
LQEYLLSGG	9	Unmodified	_LQEYLLSGG_					0	0	0			REV__nc|ENSG00000134294|Q96QD8-2|SLC38A2	REV__nc|ENSG00000134294|Q96QD8-2|SLC38A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.26031494140625	2	490.258382	978.502212	0.504	0.00024709	3.9704	0.0019465	4.4744	0.0021936	490.26122435648193	102.84	3.541	102.67	100.6	104.14	-0.17034					126	87	2	0	0	0	0.93097	1	12782	12782		30.318	1.1682	1	366170	+		46467	23435	32207	32259	51900	51900					0.012100613150096251
LQFAKEHGY	9	Unmodified	_LQFAKEHGY_					0	0	0		nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	nc|ENSG00000158571|P16118-2|PFKFB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3033447265625	2	546.777274	1091.53999	-1.1851	-0.00064797	1.9186	0.001049	0.73349	0.00040106	546.777525432083	37.534	0.31533	37.315	37.114	37.429	-0.2195					12	7	2	0	0	0	0.024477	1	3007	3007		35.618	17.294	1	60066			46468	6686	32208	32260	51901	51901					-0.002114276995371256
LQFELIAAH	9	Unmodified	_LQFELIAAH_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3131103515625	2	521.290017	1040.56548	0.18825	9.8134E-05	0.38701	0.00020174	0.57526	0.00029988	521.7912998593113	91.395	0.34109	91.406	91.319	91.66	0.011276					9	7	2	0	0	0	0.014891	1	11494	11494		128.86	0	1	39597			46469	3719	32209	32261	51902	51902					0.0468204682290434
LQFERGEV	8	Unmodified	_LQFERGEV_					0	0	0			REV__KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	REV__KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7823181152344	2	489.256174	976.497795	0.25435	0.00012444	-0.776	-0.00037966	-0.52165	-0.00025522	489.25738890958655	36.692	0.41883	36.692	36.508	36.927	0					16	10	2	0	0	0	0.027866	1	2931	2931		26.693	3.6504	1	73779	+		46470	22697	32210	32262	51903	51903					0.00860596892096055
LQFLPLFLSQ	10	Unmodified	_LQFLPLFLSQ_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.5706787109375	3	402.569142	1204.6856	0.72953	0.00029369	3.4255	0.001379	4.155	0.0016727	402.5704072078454	19.861	0.58136	19.7	19.381	19.962	-0.16079					20	11	2	0	0	0	1.1295	1	481	481		26.063	4.283	1	289090			46471	37967	32211	32263	51904	51904					0.09144035096642256
LQFLVPLL	8	Unmodified	_LQFLVPLL_					0	0	0		HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;HCN1|p.Q689Sfs*91|1|0.12|ENSG00000164588|chr5:45262529-45262529|G/-|frameshift_variant;ENSG00000164588|ENST00000303230|HCN1	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2996520996094	2	471.804771	941.59499	-0.99859	-0.00047114	-3.6197	-0.0017078	-4.6183	-0.0021789	471.8029052344775	38.052	0.5364	37.834	37.681	38.218	-0.21848					22	15	3	0	0	0	0.027866	1	3139	3139		54.765	0	1	528320			46472	7294	32212	32264	51905	51905					0.1218561083902614
LQFPLQKI	8	Unmodified	_LQFPLQKI_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.8046569824219	2	493.805303	985.596052	-0.31316	-0.00015464	1.3672	0.00067512	1.054	0.00052048	493.80554795900844	65.16	0.96117	65.198	64.707	65.668	0.037384					67	26	3	0	0	0	0.21202	1	7623	7623		138.48	0	1	1957100	+		46473	20533	32213	32265	51906	51906					0.10267825207927217
LQFPVLKKL	9	Unmodified	_LQFPVLKKL_					0	0	0			REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3370361328125	2	543.357702	1084.70085	-1.0561	-0.00057385	-2.0356	-0.001106	-3.0917	-0.0016799	543.356563121294	48.578	0.27681	48.578	48.413	48.69	0					9	7	2	0	0	0	0.015349	1	4949	4949		138.24	10.781	1	54802	+		46474	23241	32214	32266	51907	51907					0.16188946684519578
LQFRDVAIE	9	Unmodified	_LQFRDVAIE_					0	0	0		ENSG00000256771|ENST00000589717|ZNF253;nc|ENSG00000188171|Q68DY1-3|ZNF626;ENST00000595094.1_1_19:20736613-20844252:-|nuORF;ZNF737|p.H191Lfs*59|1|0.28|ENSG00000237440|chr19:20545631-20545631|T/-|frameshift_variant;nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506;ENSG00000188171|ENST00000601440|ZNF626;nc|ENSG00000184635|P35789-3|ZNF93;ENSG00000237440|ENST00000427401|ZNF737;ENSG00000160229|ENST00000344519|ZNF66;nc|ENSG00000184635|P35789-2|ZNF93;ENSG00000184635|ENST00000343769|ZNF93	ENSG00000256771|ENST00000589717|ZNF253	ENSG00000256771|ENST00000589717|ZNF253	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.261474609375	2	545.798206	1089.58186	0.46364	0.00025305	0.82721	0.00045149	1.2908	0.00070454	545.797455086835	59.749	0.11367	59.573	59.478	59.592	-0.1761					4	2	2	0	0	0	0.024319	1	6617	6617		47.657	0	1	40652			46475	10910	32215	32267	51908	51908					0.04065127988997119
LQFVDLAPI	9	Unmodified	_LQFVDLAPI_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.77783203125	2	508.294768	1014.57498	-1.4601	-0.00074218	-3.6548	-0.0018577	-5.115	-0.0025999	508.29287131822065	49.27	0.84711	49.344	48.807	49.654	0.074196					29	22	2	0	0	0	0.023596	1	5032	5032		44.117	12.162	1	1317200	+		46476	20892	32216	32268	51909	51909					0.06827815108408686
LQFVDLAPI	9	Unmodified	_LQFVDLAPI_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.294768	1014.57498	-0.15664	-7.962E-05	-4.1878	-0.0021286	-4.3445	-0.0022083	508.2926975874672	49.357	0.60756	49.256	49.068	49.676	-0.1008	-0.093453	0.00026703	NaN	44.117	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293660	+		46477	20892	32216	32268							0.06827815108408686
LQFVDLAPI	9	Unmodified	_LQFVDLAPI_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.294768	1014.57498	-0.13338	-6.7794E-05	-4.5286	-0.0023019	-4.662	-0.0023696	508.29255352422064	49.68	0.75314	49.401	49.161	49.914	-0.27977	0.051278	-7.9388E-05	NaN	44.117	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267980	+		46478	20892	32216	32268							0.06827815108408686
LQFVDLAPI	9	Unmodified	_LQFVDLAPI_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.294768	1014.57498	0.069197	3.5173E-05	-4.1521	-0.0021105	-4.0829	-0.0020753	508.29261870822296	49.484	0.74753	49.303	49.116	49.864	-0.18071	-0.046068	0.00030336	NaN	44.117	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226340	+		46479	20892	32216	32268							0.06827815108408686
LQFVRNEVT	9	Unmodified	_LQFVRNEVT_					0	0	0			REV__ENSG00000268089|ENST00000598523|GABRQ	REV__ENSG00000268089|ENST00000598523|GABRQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.3142700195312	2	553.303655	1104.59276	-0.8217	-0.00045465	4.2826	0.0023696	3.4609	0.0019149	553.3060415342901	53.609	0.68428	53.473	53.095	53.779	-0.13617					43	19	4	0	0	0	0.024381	1	5581	5581		21.96	0	1	2246200	+		46480	29152	32217	32269	51910	51910					0.04464530363270569
LQFYRLAPGQS	11	Unmodified	_LQFYRLAPGQS_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2650146484375	3	427.2313	1278.67207	-0.49614	-0.00021197	0.72403	0.00030933	0.22789	9.7363E-05	427.23055668248946	54.123	0.31402	54.123	54.043	54.357	0					23	8	4	0	0	0	0.024776	1	5893	5893		18.966	0	1	344930	+		46481	25395	32218	32270	51911	51911					0.04388177317400732
LQGAHHGCPF	10	Unmodified	_LQGAHHGCPF_					0	0	0			REV__ENST00000464192.1_1_3:107047282-107047681:-|nuORF	REV__ENST00000464192.1_1_3:107047282-107047681:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7743530273438	2	533.747993	1065.48143	-0.17665	-9.4284E-05	0.93604	0.00049961	0.7594	0.00040533	533.7478911688062	47.661	0.58385	47.474	47.279	47.863	-0.18684					33	15	3	0	0	0	0.03519	1	4689	4689		35.618	0	1	324090	+		46482	32963	32219	32271	51912	51912					-0.048688075456766455
LQGAKSSMAAP	11	Unmodified	_LQGAKSSMAAP_					0	0	0		ENST00000473610.5_1_7:150648470-150652738:-|nuORF;ENST00000461280.1_1_7:150646989-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7926025390625	2	530.776416	1059.53828	1.4969	0.00079451	-3.4963	-0.0018557	-1.9994	-0.0010612	531.2757562915224	24.878	0.56346	24.707	24.471	25.034	-0.17151					20	12	2	0	0	0	0.024762	1	1073	1073		30.318	0	1	67919			46483	14680	32220	32272	51913	51913					0.010891952201973254
LQGCDAAYH	9	Unmodified	_LQGCDAAYH_					0	0	0			REV__ENSG00000105887|ENST00000393085|MTPN	REV__ENSG00000105887|ENST00000393085|MTPN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2725830078125	2	489.210909	976.407265	0.12417	6.0743E-05	-4.1138	-0.0020125	-3.9896	-0.0019518	489.2089697395783	38.942	0.69665	38.716	38.143	38.839	-0.2257					26	18	2	0	0	0	0.024405	1	3252	3252		44.117	21.074	1	100880	+		46484	21573	32221	32273	51914	51914					-0.08188195427851497
LQGCDAAYH	9	Unmodified	_LQGCDAAYH_					0	0	0			REV__ENSG00000105887|ENST00000393085|MTPN	REV__ENSG00000105887|ENST00000393085|MTPN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.210909	976.407265	-0.58451	-0.00028595	-3.166	-0.0015488	-3.7505	-0.0018348	489.2091780598959	38.905	0.56998	38.681	38.219	38.789	-0.22311	-0.017274	0.00024065	NaN	35.618	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90222	+		46485	21573	32221	32273							-0.08188195427851497
LQGDDDKIY	9	Unmodified	_LQGDDDKIY_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENST00000558975.1_1_15:90764883-90766973:+|nuORF	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7561645507812	2	533.756204	1065.49785	-0.86752	-0.00046304	0.4444	0.0002372	-0.42311	-0.00022584	533.7562965892765	60.454	1.1491	60.201	59.904	61.053	-0.25373					68	28	4	0	0	0	0.20967	1	6735	6735		87.754	5.5138	1	2227500			46486	9401	32222	32274	51915	51915					-0.03227447898552782
LQGFPMKTGW	10	Unmodified	_LQGFPMKTGW_					0	0	0			REV__ENST00000597698.1_1_19:53507635-53507983:+|nuORF	REV__ENST00000597698.1_1_19:53507635-53507983:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2860717773438	2	582.797152	1163.57975	-0.74359	-0.00043336	2.1407	0.0012476	1.3971	0.00081422	582.798126785193	55.945	0.62613	55.729	55.372	55.998	-0.21607					23	16	2	0	0	0	0.03519	1	5983	5983		53.351	23.034	1	165500	+		46487	35810	32223	32275	51916	51916					0.004503759795397855
LQGFPMKTGW	10	Unmodified	_LQGFPMKTGW_					0	0	0			REV__ENST00000597698.1_1_19:53507635-53507983:+|nuORF	REV__ENST00000597698.1_1_19:53507635-53507983:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	582.797152	1163.57975	-0.99025	-0.00057712	2.6341	0.0015352	1.6439	0.00095804	582.7983350469233	55.796	0.58761	55.639	55.424	56.011	-0.15655	-0.045176	0.00023538	NaN	53.351	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239310	+		46488	35810	32223	32275							0.004503759795397855
LQGGGGGRYL	10	Unmodified	_LQGGGGGRYL_					0	0	0		ENST00000309315.8_1_7:44808688-44808979:+|nuORF	ENST00000309315.8_1_7:44808688-44808979:+|nuORF	ENST00000309315.8_1_7:44808688-44808979:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2641906738281	2	489.261791	976.509028	2.2187	0.0010855	1.225	0.00059934	3.4437	0.0016849	489.2622809380533	18.458	1.6018	18.458	18.087	19.689	0					63	32	3	0	0	0	1.0665	1	284	284		37.159	4.3467	1	148330			46489	12041	32224	32276	51917	51917					0.019834189862194762
LQGGTPHCEP	10	Unmodified	_LQGGTPHCEP_					0	0	0		nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3;ENST00000587789.2_1_19:55670432-55671308:-|nuORF	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.822021484375	2	519.737291	1037.46003	-0.97302	-0.00050571	1.8871	0.00098079	0.91408	0.00047508	519.7365784632027	81.317	0.57201	81.341	81.126	81.698	0.023903					19	13	3	0	0	0	0.03519	1	10084	10084		47.657	14.845	1	67621			46490	7716	32225	32277	51918	51918					-0.05720237365039793
LQGGTPQYLNQ	11	Unmodified	_LQGGTPQYLNQ_					0	0	0			REV__ENSG00000168394|ENST00000354258|TAP1	REV__ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.8749694824219	3	406.875293	1217.60405	0.3356	0.00013655	-1.5303	-0.00062262	-1.1947	-0.00048608	406.8745604663606	19.691	0.33848	19.573	19.348	19.686	-0.11872					15	6	3	0	0	0	1.017	1	429	429		33.039	2.7217	1	210800	+		46491	26254	32226	32278	51919	51919					0.003953076667585265
LQGHTNRV	8	Unmodified	_LQGHTNRV_					0	0	0		nc|ENSG00000109670|Q969H0-4|FBXW7;nc|ENSG00000109670|Q969H0-2|FBXW7;ENSG00000109670|ENST00000281708|FBXW7;FBXW7|p.Y545C|1|0.44|ENSG00000109670|chr4:152326016-152326016|T/C|missense_variant;ENST00000603821.1_1_4:153247094-153249553:-|nuORF;FBXW7|p.L547Ffs*4|1|0.21|ENSG00000109670|chr4:152326009-152326010|-/A|frameshift_variant	nc|ENSG00000109670|Q969H0-4|FBXW7	nc|ENSG00000109670|Q969H0-4|FBXW7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7718200683594	2	462.754133	923.493713	-0.42624	-0.00019724	-1.4752	-0.00068264	-1.9014	-0.00087988	462.7532811875255	23.186	0.33394	23.186	22.987	23.321	0					12	7	3	0	0	0	0.027866	1	888	888		44.117	19.914	1	122650			46492	2987	32227	32279	51920	51920					0.028905521890465025
LQGIPVLVLGN	11	Unmodified	_LQGIPVLVLGN_					0	0	0		ENSG00000134108|ENST00000256496|ARL8B;ENSG00000143862|ENST00000272217|ARL8A;ENST00000455168.5_1_3:5164021-5220395:+|nuORF	ENSG00000134108|ENST00000256496|ARL8B	ENSG00000134108|ENST00000256496|ARL8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.8458251953125	2	561.847699	1121.68084	-0.10164	-5.7109E-05	-3.3286	-0.0018702	-3.4303	-0.0019273	561.8456674057395	95.47	0.99585	95.334	94.982	95.978	-0.13689					72	22	5	0	0	0	1.0442	1	11793	11793		26.693	2.4902	1	1624700			46493	4755	32228	32280	51921	51921					0.12487150953870696
LQGKPRLHK	9	Unmodified	_LQGKPRLHK_					0	0	0			REV__ENSG00000142677|ENST00000270800|IL22RA1	REV__ENSG00000142677|ENST00000270800|IL22RA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3095092773438	2	538.838	1075.66145	0.051969	2.8003E-05	-3.0785	-0.0016588	-3.0265	-0.0016308	538.8358361124141	18.788	0.24738	18.584	18.46	18.708	-0.20371					7	4	2	0	0	0	0.024541	1	339	339		23.042	0	1	15929	+		46494	24177	32229	32281	51922	51922					0.1266423945362476
LQGKPRLHK	9	Unmodified	_LQGKPRLHK_					0	0	0			REV__ENSG00000142677|ENST00000270800|IL22RA1	REV__ENSG00000142677|ENST00000270800|IL22RA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	538.838	1075.66145	2.0153	0.0010859	-2.1092	-0.0011365	-0.09393	-5.0613E-05	538.836644266127	18.407	0.48871	18.407	18.186	18.674	0	-0.12453	-0.00081517	NaN	10.866	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138020	+		46495	24177	32229	32281							0.1266423945362476
LQGLAVPI	8	Unmodified	_LQGLAVPI_					0	0	0		ENST00000508797.1_1_5:179035408-179036813:+|nuORF	ENST00000508797.1_1_5:179035408-179036813:+|nuORF	ENST00000508797.1_1_5:179035408-179036813:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7452087402344	2	405.757821	809.501089	1.5456	0.00062713	4.338	0.0017602	5.8836	0.0023873	405.7599436802549	45.428	0.36781	45.472	45.279	45.647	0.043877					17	10	2	0	0	0	0.027866	1	4348	4348		50.025	0	1	245680			46496	15791	32230	32282	51923	51923					0.08871891736748694
LQGLGRAAEV	10	Unmodified	_LQGLGRAAEV_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2898254394531	2	507.290548	1012.56654	-0.95503	-0.00048448	1.661	0.00084259	0.70592	0.00035811	507.2904778481497	43.727	0.71623	43.582	43.241	43.958	-0.14471					56	19	4	0	0	0	0.57594	1	4115	4115		79.713	14.247	1	4101800	+		46497	27306	32231	32283	51924	51924					0.060762611917994036
LQGLHGIELPS	11	Unmodified	_LQGLHGIELPS_					0	0	0		ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2857666015625	2	582.324588	1162.63462	-0.9247	-0.00053847	1.2844	0.00074792	0.35967	0.00020945	582.3249218011506	55.478	0.6202	55.247	54.927	55.547	-0.23087					46	17	4	0	0	0	0.02479	1	5909	5909		51.193	1.6567	1	1140600			46498	12108	32232	32284	51925	51925					0.05981086051792772
LQGLLGLL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LQGLLGLL_					1	0	0		ENSG00000242866|ENST00000450892|STRC;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000409459.5_1_11:95578283-95578316:-|nuORF	ENSG00000242866|ENST00000450892|STRC	ENSG00000242866|ENST00000450892|STRC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7801208496094	2	434.778754	867.542954	-0.095049	-4.1325E-05	3.2879	0.0014295	3.1928	0.0013882	434.78010469367223	36.167	2.0758	36.205	35.569	37.645	0.038044					161	55	3	0	0	0	0.94001	1	2864	2864		46.766	6.1938	1	9580100			46499	10803	32233	32285	51926	51926					0.10388447425282266
LQGLQQEP	8	Unmodified	_LQGLQQEP_					0	0	0		ENSG00000102349|ENST00000468660|KLF8;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF	ENSG00000102349|ENST00000468660|KLF8	ENSG00000102349|ENST00000468660|KLF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7812805175781	2	456.742899	911.471246	-0.019856	-9.0689E-06	0.16964	7.7481E-05	0.14978	6.8412E-05	456.74280112289847	49.416	0.68438	49.315	48.992	49.676	-0.1008					34	17	3	0	0	0	0.027866	1	4927	4927		60.294	19.721	1	624940			46500	2403	32234	32286	51927	51927					0.011969080007588673
LQGLRVPRQ	9	Unmodified	_LQGLRVPRQ_					0	0	0			REV__ENSG00000173137|ENST00000308860|ADCK5	REV__ENSG00000173137|ENST00000308860|ADCK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7743530273438	2	533.827632	1065.64071	-0.11562	-6.1723E-05	0.81964	0.00043755	0.70402	0.00037582	533.8281237118338	47.819	0.14679	47.632	47.526	47.673	-0.18684					6	3	2	0	0	0	0.024541	1	4689	4689		24.203	4.8428	1	123370	+		46501	26742	32235	32287	51928	51928					0.11051649073965564
LQGMDLNLE	9	Unmodified	_LQGMDLNLE_					0	0	0		ENSG00000094631|ENST00000334136|HDAC6;ENST00000493923.1_1_X:48661349-48661624:+|nuORF;ENST00000476625.5_1_X:48660534-48664079:+|nuORF;ENST00000489352.5_1_X:48660634-48664079:+|nuORF;ENST00000481929.5_1_X:48660630-48664079:+|nuORF;ENST00000477528.5_1_X:48660534-48664079:+|nuORF;ENST00000465269.5_1_X:48660931-48664079:+|nuORF;ENST00000462730.5_1_X:48660634-48664079:+|nuORF	ENSG00000094631|ENST00000334136|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.80810546875	2	516.755149	1031.49575	-0.17683	-9.1376E-05	2.8568	0.0014763	2.68	0.0013849	517.258369227821	93.624	0.21531	93.624	93.515	93.73	0					6	4	2	0	0	0	0.024477	1	11883	11883		35.618	3.6634	1	50824			46502	2006	32236	32288	51929	51929					-0.018741999080248206
LQGMMSLID	9	Unmodified	_LQGMMSLID_					0	0	0			REV__ENSG00000175792|ENST00000322623|RUVBL1	REV__ENSG00000175792|ENST00000322623|RUVBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7669372558594	2	504.248646	1006.48274	-0.14532	-7.3279E-05	1.7397	0.00087724	1.5944	0.00080396	504.24849626688064	65.988	0.36401	65.746	65.583	65.947	-0.24145					11	8	2	0	0	0	0.024323	1	7549	7549		53.351	0	1	237270	+		46503	26973	32237	32289	51930	51930					-0.020243542917683044
LQGPQQAW	8	Unmodified	_LQGPQQAW_					0	0	0		ENST00000594954.5_1_19:35820289-35820811:+|nuORF;ENST00000599799.1_1_19:35820106-35820811:+|nuORF	ENST00000594954.5_1_19:35820289-35820811:+|nuORF	ENST00000594954.5_1_19:35820289-35820811:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.7781677246094	2	464.237784	926.461016	0.14956	6.9433E-05	0.10413	4.8339E-05	0.25369	0.00011777	464.23777703744355	32.974	0.48769	32.773	32.449	32.937	-0.20019					21	11	2	0	0	0	0.027866	1	2298	2298		33.516	8.0654	1	166180			46504	17415	32238	32290	51931	51931					-0.005156549338153127
LQGQPLVLE	9	Unmodified	_LQGQPLVLE_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM;L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7884826660156	2	498.78985	995.565146	-0.42546	-0.00021222	-2.9852	-0.001489	-3.4107	-0.0017012	498.7883940741003	21.611	1.2857	21.521	21.158	22.444	-0.090092					64	26	4	0	0	0	0.62163	1	661	661		51.335	3.6781	1	2493100			46505	18651	32239	32291	51932	51932					0.06718627103032304
LQGQPLVLE	9	Unmodified	_LQGQPLVLE_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM;L1CAM|p.W740*|1|0.67|ENSG00000198910|chrX:153866860-153866860|C/-|frameshift_variant;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7884521484375	2	498.78985	995.565146	-0.28134	-0.00014033	-3.1093	-0.0015509	-3.3906	-0.0016912	498.7883463263969	21.483	1.0123	21.554	21.254	22.266	0.071489					58	20	4	0	0	0	0.6504	1	634	634		49.442	1.5259	1	2483100			46506	18651	32239	32291	51933	51933					0.06718627103032304
LQGQQRTSI	9	Unmodified	_LQGQQRTSI_					0	0	0		ENST00000563365.1_2_2:55509501-55509765:+|nuORF	ENST00000563365.1_2_2:55509501-55509765:+|nuORF	ENST00000563365.1_2_2:55509501-55509765:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7877197265625	2	515.78563	1029.55671	-0.26502	-0.00013669	1.363	0.000703	1.0979	0.0005663	515.7876611968024	49.37	1.1646	49.217	48.864	50.029	-0.15276					74	31	4	0	0	0	0.34489	2	5077	5077;5090		69.628	9.5094	1	14392000			46507	16867	32240	32292	51934;51935	51934					0.04311073186431713
LQGRATNMSQY	11	Oxidation (M)	_LQGRATNM(Oxidation (M))SQY_		LQGRATNM(1)SQY		LQGRATNM(55)SQY	0	0	1			REV__nc|ENSG00000223519|B7ZC32|KIF28P	REV__nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.8706970214844	3	428.871555	1283.59283	0.60691	0.00026029	-3.2654	-0.0014004	-2.6585	-0.0011401	428.87023194734195	36.907	1.352	36.714	36.335	37.687	-0.193					113	34	4	0	0	0	0.84303	1	2939	2939		55.084	15.026	1	12673000	+		46508	37135	32241	32293	51936	51936		978			-0.037618376990167235
LQGSDPSLV	9	Unmodified	_LQGSDPSLV_					0	0	0			REV__ENST00000344120.4_1_5:141694035-141694113:-|nuORF	REV__ENST00000344120.4_1_5:141694035-141694113:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.28497314453125	2	458.242732	914.470912	1.892	0.00086699	-1.2292	-0.00056329	0.66275	0.0003037	458.2420433575885	59.222	0.7196	59.035	58.793	59.513	-0.18705					38	19	3	0	0	0	0.021088	1	6692	6692		90.777	26.569	1	1340600	+		46509	30679	32242	32294	51937	51937					0.010254882809022092
LQHAISALEV	10	Unmodified	_LQHAISALEV_					0	0	0			REV__ENSG00000123594|ENST00000380622|ATXN3L	REV__ENSG00000123594|ENST00000380622|ATXN3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.805419921875	2	540.806031	1079.59751	-0.83867	-0.00045356	0.8381	0.00045325	-0.00056441	-3.0524E-07	540.8061123399344	52.729	1.1466	52.729	52.085	53.232	0					78	29	4	0	0	0	0.98527	1	5686	5686		47.96	0.30219	1	6202200	+		46510	22708	32243	32295	51938	51938					0.060894145060501614
LQHEEMEW	8	Unmodified	_LQHEEMEW_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3475341796875	2	551.237124	1100.45969	-0.51371	-0.00028317	3.4636	0.0019093	2.9499	0.0016261	551.2387930908351	31.823	0.53059	31.665	31.374	31.904	-0.15772					26	12	3	0	0	0	0.027866	1	2134	2134		33.516	9.3128	1	472710	+		46511	20481	32244	32296	51939	51939					-0.08651657084874387
LQHEPTTV	8	Unmodified	_LQHEPTTV_					0	0	0			REV__ENSG00000161800|ENST00000312377|RACGAP1	REV__ENSG00000161800|ENST00000312377|RACGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2313537597656	2	462.742899	923.471246	0.12533	5.7996E-05	-0.33699	-0.00015594	-0.21166	-9.7942E-05	462.74257768135817	35.422	0.73961	35.466	35.229	35.968	0.04406					29	18	3	0	0	0	0.027866	1	2689	2689		30.504	10.022	1	218880	+		46512	25399	32245	32297	51940	51940					0.006449080007541852
LQHERPPPK	9	Unmodified	_LQHERPPPK_					0	0	0		RWDD4-SORBS2|3|fusion;nc|ENSG00000154556|O94875-8|SORBS2	RWDD4-SORBS2|3|fusion	RWDD4-SORBS2|3|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.28955078125	2	551.311815	1100.60908	0.17125	9.4413E-05	-1.485	-0.0008187	-1.3138	-0.00072429	551.3110921489742	48.003	0.45525	47.816	47.596	48.052	-0.18684					18	11	2	0	0	0	0.024397	1	4745	4745		31.53	0	1	177490			46513	18394	32246	32298	51941	51941					0.06279656320043614
LQHLRRVD	8	Unmodified	_LQHLRRVD_					0	0	0		ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11;ENST00000572732.1_1_16:11785059-11785929:-|nuORF	ENSG00000153066|ENST00000283033|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.7756958007812	2	518.804157	1035.59376	0.26778	0.00013893	1.6239	0.00084246	1.8916	0.00098139	518.8047488573885	75.596	0.23373	75.421	75.234	75.468	-0.17548					8	5	2	0	0	0	0.027866	1	8933	8933		16.473	0	1	105430			46514	6316	32247	32299	51942	51942					0.07738789522863954
LQHMDFLY	8	Unmodified	_LQHMDFLY_					0	0	0		ENSG00000186204|ENST00000550308|CYP4F12;ENST00000550627.5_1_19:15793132-15807110:+|nuORF;ENST00000518629.7_2_19:15791179-15807110:+|nuORF;ENST00000517734.5_1_19:15784518-15794591:+|nuORF	ENSG00000186204|ENST00000550308|CYP4F12;ENST00000517734.5_1_19:15784518-15794591:+|nuORF	ENSG00000186204|ENST00000550308|CYP4F12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7554321289062	2	533.754953	1065.49535	-0.99716	-0.00053224	3.1034	0.0016565	2.1062	0.0011242	533.7564770203098	60.35	1.02	60.174	59.813	60.833	-0.1761					60	25	4	0	0	0	0.87148	1	6728	6728		53.351	0.26249	1	2589100			46515	9529;15917	32248	32300	51943	51943					-0.0347757483721125
LQHTTGLLI	9	Unmodified	_LQHTTGLLI_					0	0	0			REV__ENST00000490164.1_1_10:92982504-92982606:+|nuORF	REV__ENST00000490164.1_1_10:92982504-92982606:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.298095703125	2	498.297842	994.581131	-0.16286	-8.1152E-05	0.57088	0.00028447	0.40802	0.00020332	498.297763142274	62.014	0.85845	61.787	61.261	62.119	-0.22663					92	22	6	0	0	0	0.15029	2	7171	7171;7184		99.375	14.015	1	3722200	+		46516	33693	32249	32301	51944;51945	51944					0.0836233333996006
LQHTTGLLI	9	Unmodified	_LQHTTGLLI_					0	0	0			REV__ENST00000490164.1_1_10:92982504-92982606:+|nuORF	REV__ENST00000490164.1_1_10:92982504-92982606:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2979736328125	2	498.297842	994.581131	-0.37484	-0.00018678	0.36678	0.00018277	-0.0080602	-4.0164E-06	498.2978794687007	61.779	0.62707	61.846	61.43	62.057	0.067005					76	16	6	0	0	0	0.20967	1	7078	7078		87.754	10.908	1	3290800	+		46517	33693	32249	32301	51946	51946					0.0836233333996006
LQHVKKDLS	9	Unmodified	_LQHVKKDLS_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.296142578125	2	534.314023	1066.61349	-0.17744	-9.4807E-05	4.3927	0.0023471	4.2153	0.0022523	534.3162746268522	79.883	0.29276	79.664	79.494	79.786	-0.21923					9	6	2	0	0	0	0.024427	1	9581	9581		26.693	0	1	66793	+		46518	20551	32250	32302	51947	51947					0.08285120742925756
LQIAALGTY	9	Unmodified	_LQIAALGTY_					0	0	0			REV__ENSG00000029559|ENST00000226284|IBSP	REV__ENSG00000029559|ENST00000226284|IBSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2708435058594	2	475.271293	948.528032	-0.28034	-0.00013324	-0.29344	-0.00013946	-0.57379	-0.0002727	475.2709121209375	31.128	1.0157	30.976	30.216	31.232	-0.15231					46	24	3	0	0	0	0.83071	1	2029	2029		37.159	1.5408	1	819570	+		46519	20039	32251	32303	51948	51948					0.05170955557287016
LQICLHIV	8	Unmodified	_LQICLHIV_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.29595947265625	2	469.778231	937.541908	2.6154	0.0012286	-0.477	-0.00022408	2.1384	0.0010046	469.77914410411483	18.48	0.48862	18.48	18.235	18.724	0					14	9	2	0	0	0	0.027866	1	317	317		20.482	0	1	15186			46520	2494	32252	32304	51949	51949					0.07063909784722
LQIEEITHV	9	Unmodified	_LQIEEITHV_					0	0	0			REV__ENST00000556343.1_1_14:69350028-69351010:-|nuORF	REV__ENST00000556343.1_1_14:69350028-69351010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.2935180664062	2	541.298039	1080.58152	-1.508	-0.00081626	1.323	0.00071616	-0.18492	-0.0001001	541.2985949841577	39.779	0.75185	39.802	39.598	40.349	0.023727					28	20	2	0	0	0	0.024381	1	3389	3389		55.504	4.1688	1	528520	+		46521	35031	32253	32305	51950	51950					0.04445708269122406
LQIFFLII	8	Unmodified	_LQIFFLII_					0	0	0		ENST00000469457.5_1_1:54344354-54354655:-|nuORF;ENST00000465897.5_1_1:54348674-54354655:-|nuORF	ENST00000469457.5_1_1:54344354-54354655:-|nuORF	ENST00000469457.5_1_1:54344354-54354655:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7901306152344	2	503.820421	1005.62629	-0.59849	-0.00030153	-3.4495	-0.0017379	-4.048	-0.0020395	503.81858889793716	42.494	0.378	42.264	42.139	42.517	-0.2303					15	9	2	0	0	0	0.027866	1	3811	3811		14.664	3.1531	1	105990			46522	14798	32254	32306	51951	51951					0.12370183873144924
LQIHLCRKK	9	Unmodified	_LQIHLCRKK_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.84619140625	2	569.84751	1137.68047	-1.5049	-0.00085754	-1.9356	-0.001103	-3.4404	-0.0019605	569.8463155285247	38.492	1.0411	38.492	38.247	39.288	0					68	27	4	0	0	0	0.83071	1	3237	3237		37.159	5.6293	1	2787200			46523	18776	32255	32307	51952	51952					0.11713452753065212
LQIHLCRKK	9	Unmodified	_LQIHLCRKK_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	569.84751	1137.68047	-1.874	-0.0010679	-1.6916	-0.00096393	-3.5656	-0.0020318	569.8464406403712	38.799	1.3815	38.826	38.496	39.877	0.027275	0.2488	0.00053505	NaN	37.159	92	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1406500			46524	18776	32255	32307							0.11713452753065212
LQIIKRHLV	9	Unmodified	_LQIIKRHLV_					0	0	0		ENST00000283943.9_1_2:230632112-230632244:-|nuORF	ENST00000283943.9_1_2:230632112-230632244:-|nuORF	ENST00000283943.9_1_2:230632112-230632244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.3399658203125	2	560.371675	1118.7288	-0.39137	-0.00021931	-0.55859	-0.00031302	-0.94996	-0.00053233	560.3712327241186	101.06	0.12872	101.07	100.96	101.09	0.0090332					4	2	2	0	0	0	0.024541	1	12884	12884		18.324	6.8134	1	87482			46525	11742	32256	32308	51953	51953					0.1741826966458575
LQIIRIFVS	9	Unmodified	_LQIIRIFVS_					0	0	0		ENST00000523718.5_1_8:17581004-17613316:-|nuORF	ENST00000523718.5_1_8:17581004-17613316:-|nuORF	ENST00000523718.5_1_8:17581004-17613316:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.2752685546875	2	544.844959	1087.67537	-0.35055	-0.000191	-0.38034	-0.00020723	-0.73089	-0.00039822	544.8457337933122	77.37	0.37997	77.37	77.252	77.632	0					12	8	2	0	0	0	0.024506	1	9590	9590		30.504	0	1	104190			46526	16047	32257	32309	51954	51954					0.1350347216209684
LQIITGLLAF	10	Unmodified	_LQIITGLLAF_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8059692382812	2	544.839342	1087.66413	-0.48396	-0.00026368	0.22608	0.00012318	-0.25788	-0.0001405	544.8393153605256	73.026	0.51314	72.749	72.497	73.01	-0.2769					31	11	4	0	0	0	0.03519	1	8564	8564		51.193	17.02	1	553440	+		46527	22148	32258	32310	51955	51955					0.12380650067939314
LQIKLEYED	9	Unmodified	_LQIKLEYED_					0	0	0			REV__nc|ENSG00000284862|Q9UFE4|CCDC39	REV__nc|ENSG00000284862|Q9UFE4|CCDC39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.2590942382812	2	575.803154	1149.59175	0.15856	9.1297E-05	-0.32739	-0.00018851	-0.16883	-9.7214E-05	575.8026305039848	71.076	0.61874	70.804	70.528	71.147	-0.27184					40	13	4	0	0	0	0.024374	1	8319	8319		32.812	0	1	400350	+		46528	37212	32259	32311	51956	51956					0.02294271203709286
LQIKPNDL	8	Unmodified	_LQIKPNDL_					0	0	0			REV__ENSG00000004487|ENST00000400181|KDM1A	REV__ENSG00000004487|ENST00000400181|KDM1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2959289550781	2	470.776742	939.538931	0.43995	0.00020712	1.1881	0.00055934	1.6281	0.00076646	470.7774778741966	18.801	0.24345	18.669	18.499	18.743	-0.13147					6	4	2	0	0	0	0.027866	1	325	325		24.203	0	1	25724	+		46529	19779	32260	32312	51957	51957					0.0667435793156983
LQIKWAKYSLD	11	Unmodified	_LQIKWAKYSLD_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7457580566406	3	455.590605	1363.74999	0.51706	0.00023557	-4.3723	-0.001992	-3.8553	-0.0017564	455.5884339082436	53.662	1.0534	53.662	53.439	54.492	0					50	29	3	0	0	0	0.024723	1	5915	5915		22.562	0.78116	1	194530			46530	11044	32261	32313	51958	51958					0.08266190182803257
LQIKWAKYSLD	11	Unmodified	_LQIKWAKYSLD_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	455.590605	1363.74999	-0.56088	-0.00025553	-2.5958	-0.0011826	-3.1567	-0.0014382	455.5893668772386	53.592	0.47649	53.455	53.244	53.721	-0.13617	-0.086114	0.0011077	NaN	17.167	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214430			46531	11044	32261	32313							0.08266190182803257
LQIKWAKYSLD	11	Unmodified	_LQIKWAKYSLD_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	455.590605	1363.74999	-0.19428	-8.8513E-05	-3.1219	-0.0014223	-3.3162	-0.0015108	455.58904173543146	53.753	0.36869	53.507	53.348	53.717	-0.2453	-0.034061	0.00038864	NaN	17.167	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216900			46532	11044	32261	32313							0.08266190182803257
LQILFTLLQ	9	Unmodified	_LQILFTLLQ_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3201293945312	2	544.839342	1087.66413	-0.80282	-0.00043741	0.21972	0.00011971	-0.5831	-0.0003177	544.83928059042	72.762	0.98326	72.762	72.533	73.516	0					74	24	4	0	0	0	0.020937	1	8848	8848		98.629	19.178	1	2701100			46533	1742	32262	32314	51959	51959					0.12380650067939314
LQILQDMTA	9	Unmodified	_LQILQDMTA_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7352905273438	2	516.773342	1031.53213	-0.84538	-0.00043687	-4.2181	-0.0021798	-5.0635	-0.0026167	516.7709514275379	43.704	0.75281	43.484	42.996	43.749	-0.21939					31	20	2	0	0	0	0.024319	1	4054	4054		47.657	3.5405	1	275030	+		46534	27764	32263	32315	51960	51960					0.017626769886874172
LQILQDMTA	9	Unmodified	_LQILQDMTA_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.773342	1031.53213	-0.80627	-0.00041666	-0.78142	-0.00040382	-1.5877	-0.00082048	517.2764480383079	43.218	0.57927	43.218	42.932	43.511	0	-0.18917	0.0032148	NaN	52.937	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86525	+		46535	27764	32263	32315							0.017626769886874172
LQILRGKEKK	10	Unmodified	_LQILRGKEKK_					0	0	0			REV__nc|ENSG00000143847|O75335-2|PPFIA4	REV__nc|ENSG00000143847|O75335-2|PPFIA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	404.931073	1211.77139	-1.0252	-0.00041514	1.2229	0.00049517	0.19764	8.003E-05	404.9317878838792	26.483	0.17871	26.32	26.165	26.344	-0.16331					8	4	3	0	0	0	0.03519	1	1353	1353		25.126	5.8633	1	380850	+		46536	24291	32264	32316	51961	51961					0.17397620002157055
LQIPEVYLRE	10	Unmodified	_LQIPEVYLRE_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000474637.5_1_9:128108952-128125022:+|nuORF	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	629.7474365234375	2	630.353345	1258.69214	-1.4389	-0.00090704	-3.765	-0.0023733	-5.2039	-0.0032803	630.8519826732437	61.673	0.24704	61.495	61.329	61.576	-0.17781					8	5	2	0	0	0	0.03519	1	6900	6900		70.816	24.844	1	102060			46537	7383	32265	32317	51962	51962					0.07313928257349289
LQIPEVYLRE	10	Unmodified	_LQIPEVYLRE_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000474637.5_1_9:128108952-128125022:+|nuORF	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	630.353345	1258.69214	0.27958	0.00017623	-3.2434	-0.0020445	-2.9638	-0.0018682	630.3518232237948	61.433	0.46554	61.433	61.216	61.682	0	-0.054117	0.00044325	NaN	70.816	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235670			46538	7383	32265	32317							0.07313928257349289
LQIPEVYLRE	10	Unmodified	_LQIPEVYLRE_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000474637.5_1_9:128108952-128125022:+|nuORF	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	630.353345	1258.69214	0.88833	0.00055996	-3.8992	-0.0024579	-3.0109	-0.0018979	630.3523839363628	61.737	0.71678	61.511	61.298	62.015	-0.22663	0.023449	-0.00038358	NaN	70.816	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213140			46539	7383	32265	32317							0.07313928257349289
LQIPEVYLRE	10	Unmodified	_LQIPEVYLRE_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000474637.5_1_9:128108952-128125022:+|nuORF	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	630.353345	1258.69214	-0.11055	-6.9688E-05	-3.5965	-0.0022671	-3.7071	-0.0023368	630.3529967447704	61.439	0.46711	61.51	61.203	61.67	0.071125	0.022811	-1.9337E-06	NaN	70.816	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176810			46540	7383	32265	32317							0.07313928257349289
LQIQGTLLLQ	10	Unmodified	_LQIQGTLLLQ_					0	0	0		nc|ENSG00000016864|Q68CQ7-2|GLT8D1;ENST00000484163.5_1_3:52729811-52734476:-|nuORF	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.8445434570312	2	563.845156	1125.67576	-0.35671	-0.00020113	-0.019215	-1.0835E-05	-0.37593	-0.00021197	563.8450341259227	66.128	0.57495	65.855	65.606	66.181	-0.27282					45	14	4	0	0	0	0.29487	1	7832	7832		109.48	2.5981	1	2357600			46541	15296	32266	32318	51963	51963					0.11794847091300653
LQIQIYNGI	9	Unmodified	_LQIQIYNGI_					0	0	0			REV__ENSG00000128519|ENST00000249284|TAS2R16	REV__ENSG00000128519|ENST00000249284|TAS2R16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.289794921875	2	531.303124	1060.5917	-0.264	-0.00014026	2.6613	0.001414	2.3973	0.0012737	531.3040133174648	55.357	0.27383	55.144	54.897	55.171	-0.2125					9	7	2	0	0	0	0.024487	1	5907	5907		24.203	0	1	514030	+		46542	22987	32267	32319	51964	51964					0.06382315994369492
LQIRKSAR	8	Unmodified	_LQIRKSAR_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29132080078125	2	486.309075	970.603597	-0.35201	-0.00017119	-3.3108	-0.0016101	-3.6628	-0.0017813	486.3066549729072	60.048	0.24845	59.848	59.727	59.975	-0.20016					8	6	2	0	0	0	0.027866	1	6840	6840		51.335	0	1	96460			46543	10866	32268	32320	51965	51965					0.11711977528227635
LQIRMLIN	8	Unmodified	_LQIRMLIN_					0	0	0		ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.2884216308594	2	500.802237	999.589921	0.4808	0.00024079	-3.1676	-0.0015863	-2.6868	-0.0013455	500.79949530615687	89.128	0.71521	89.107	88.694	89.409	-0.021637					34	16	3	0	0	0	0.027866	1	11254	11254		31.955	0	1	196780			46544	17151	32269	32321	51966	51966					0.09010983704786213
LQIRQDVE	8	Unmodified	_LQIRQDVE_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.74029541015625	2	500.774731	999.534909	-0.43443	-0.00021755	1.0034	0.00050249	0.569	0.00028494	500.7751784294152	40.751	0.60321	40.616	40.381	40.985	-0.13553					21	15	2	0	0	0	0.027866	1	3563	3563		17.365	3.5896	1	236000			46545	18063	32270	32322	51967	51967					0.035122684378507074
LQIRQDVE	8	Unmodified	_LQIRQDVE_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	500.774731	999.534909	0.23878	0.00011957	3.7896	0.0018977	4.0284	0.0020173	500.77680517427916	40.639	0.80736	40.639	40.137	40.944	0	-0.06591	0.0023353	NaN	11.511	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348110			46546	18063	32270	32322							0.035122684378507074
LQIRQDVE	8	Unmodified	_LQIRQDVE_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.774731	999.534909	0.68246	0.00034176	1.1043	0.00055298	1.7867	0.00089474	500.77504065923364	40.794	0.50381	40.67	40.476	40.98	-0.12317	-0.034672	-0.00035423	NaN	11.511	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308450			46547	18063	32270	32322							0.035122684378507074
LQIRQDVE	8	Unmodified	_LQIRQDVE_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	500.774731	999.534909	-0.26158	-0.00013099	3.0819	0.0015433	2.8203	0.0014124	500.7764731948639	40.815	0.6206	40.838	40.562	41.182	0.023006	0.1326	0.0016265	NaN	11.511	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375400			46548	18063	32270	32322							0.035122684378507074
LQISERPSL	9	Unmodified	_LQISERPSL_					0	0	0			REV__ENSG00000137628|ENST00000393743|DDX60	REV__ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3251342773438	2	521.798206	1041.58186	-0.18325	-9.5617E-05	-0.77346	-0.00040359	-0.95671	-0.00049921	521.7981837890043	50.266	1.2607	50.115	49.745	51.006	-0.1512					93	36	4	0	0	0	0.024288	1	5158	5158		44.377	0	1	1744600	+		46549	23771	32271	32323	51968	51968					0.06273127989015848
LQISPNSRLSQ	11	Unmodified	_LQISPNSRLSQ_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000567360.1_1_15:75650538-75650949:-|nuORF;ENST00000564785.5_1_15:75650790-75651240:-|nuORF;ENST00000566099.5_1_15:75649132-75651406:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.8984680175781	3	414.89821	1241.6728	0.31977	0.00013267	-0.1938	-8.0408E-05	0.12597	5.2266E-05	414.89822568759973	25.073	1.2709	25.154	24.779	26.049	0.08009					99	29	6	0	0	0	0.96481	1	1079	1079		44.639	2.3969	1	11103000			46550	5409	32272	32324	51969	51969					0.06162971966477926
LQITLPVV	8	Unmodified	_LQITLPVV_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7879943847656	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	1.0574	1	3613	3613		20.482	0	1	35892000	+		46551	19855	32273	32325	51970	51970					0.11308733942325944
LQITLPVV	8	Unmodified	_LQITLPVV_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7881164550781	2	441.786579	881.558604	0.87176	0.00038513	2.2048	0.00097404	3.0765	0.0013592	441.78747647612784	40.712	1.9602	40.589	40.197	42.158	-0.12317					202	55	5	0	0	0	1.0574	1	3619	3619		21.702	0	1	30089000	+		46552	19855	32273	32325	51971	51971					0.11308733942325944
LQIVPSRLI	9	Unmodified	_LQIVPSRLI_					0	0	0		nc|ENSG00000124523|Q9NXA8-3|SIRT5;nc|ENSG00000124523|Q9NXA8-2|SIRT5;ENSG00000124523|ENST00000606117|SIRT5	nc|ENSG00000124523|Q9NXA8-3|SIRT5	nc|ENSG00000124523|Q9NXA8-3|SIRT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7959594726562	2	519.837134	1037.65972	-0.68792	-0.0003576	-1.2287	-0.00063873	-1.9166	-0.00099633	519.8364705656323	48.234	0.4095	48.301	48.007	48.417	0.066795					15	10	2	0	0	0	0.024541	1	4856	4856		15.642	0	1	167120			46553	4055	32274	32326	51972	51972					0.1423918564505584
LQIVQGDILK	10	Unmodified	_LQIVQGDILK_					0	0	0			REV__nc|ENSG00000166478|P52747-2|ZNF143	REV__nc|ENSG00000166478|P52747-2|ZNF143	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.8449096679688	2	563.845156	1125.67576	-0.35671	-0.00020113	-0.019215	-1.0835E-05	-0.37593	-0.00021197	563.8450341259227	66.128	0.57495	65.855	65.606	66.181	-0.27282					45	14	4	0	0	0	0.42812	1	7843	7843		95.815	2.6719	1	2357600	+		46554	26023	32275	32327	51973	51973					0.11794847091277916
LQIYDGDLESE	11	Unmodified	_LQIYDGDLESE_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.758056640625	3	427.866352	1280.57723	0.094264	4.0332E-05	-2.3592	-0.0010094	-2.265	-0.0009691	427.86444777981137	41.271	0.15429	41.136	41.06	41.215	-0.13553					5	3	2	0	0	0	0.024809	1	3640	3640		12.433	0	1	21199			46555	10569	32276	32328	51974	51974					-0.05183845735086834
LQKAISVLE	9	Unmodified	_LQKAISVLE_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.8075256347656	2	500.8055	999.596446	1.1367	0.00056929	3.2515	0.0016284	4.3883	0.0021977	500.80691396471514	107.23	0.54973	107.23	106.88	107.43	0					24	10	3	0	0	0	0.39228	1	13789	13789		66.429	6.1353	1	389010			46556	9648	32277	32329	51975	51975					0.09663200137129024
LQKAISVLE	9	Unmodified	_LQKAISVLE_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	500.8055	999.596446	0.26474	0.00013258	4.1125	0.0020595	4.3772	0.0021921	500.80720596841684	107.19	0.46753	107.04	106.83	107.3	-0.15772	-0.071815	-0.00040068	NaN	66.429	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264810			46557	9648	32277	32329							0.09663200137129024
LQKALSKVD	9	Unmodified	_LQKALSKVD_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;ENST00000473015.5_1_4:113483525-113509083:-|nuORF	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3068542480469	2	501.303124	1000.5917	-0.33156	-0.00016621	0.092115	4.6177E-05	-0.23945	-0.00012003	501.3025803409564	31.36	0.33512	31.371	31.17	31.505	0.011799					12	7	2	0	0	0	0.024405	1	2043	2043		20.947	2.6225	1	68946			46558	5262	32278	32330	51976	51976					0.09142315994370165
LQKALSKVD	9	Unmodified	_LQKALSKVD_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;ENST00000473015.5_1_4:113483525-113509083:-|nuORF	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.303124	1000.5917	-0.18164	-9.1055E-05	0.14561	7.2996E-05	-0.036025	-1.8059E-05	501.3031806308592	31.113	0.33022	31.182	30.997	31.327	0.068962	-0.12792	-0.00011504	NaN	14.865	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88533			46559	5262	32278	32330							0.09142315994370165
LQKEKQSMSR	10	Unmodified	_LQKEKQSMSR_					0	0	0		ENSG00000181626|ENST00000587848|ANKRD62;nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.56280517578125	3	412.223928	1233.64996	-0.49247	-0.00020301	-1.9769	-0.00081493	-2.4694	-0.0010179	412.22301362738875	33.013	0.63949	32.847	32.597	33.236	-0.16565					25	15	2	0	0	0	0.03519	1	2299	2299		17.833	5.4003	1	58907			46560	9054	32279	32331	51977	51977					0.04247629577344014
LQKEQKIK	8	Unmodified	_LQKEQKIK_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.818603515625	2	507.818941	1013.62333	0.50427	0.00025608	-0.52104	-0.00026459	-0.016768	-8.5151E-06	507.8185289677455	19.067	0.54474	18.907	18.688	19.233	-0.16079					22	10	3	0	0	0	0.5947	1	379	379		76.774	0	1	330830			46561	4961	32280	32332	51978	51978					0.11706308748318861
LQKEQKIK	8	Unmodified	_LQKEQKIK_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	507.818941	1013.62333	1.9137	0.00097181	-1.8156	-0.00092201	0.098063	4.9798E-05	507.81786299978234	19.137	0.39496	18.903	18.682	19.077	-0.23345	-0.010988	-0.00083312	NaN	76.774	21	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252280			46562	4961	32280	32332							0.11706308748318861
LQKETKEL	8	Unmodified	_LQKETKEL_					0	0	0			REV__nc|ENSG00000130402|O43707-3|ACTN4	REV__nc|ENSG00000130402|O43707-3|ACTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.8046569824219	2	494.787307	987.560061	-0.57004	-0.00028205	0.51345	0.00025405	-0.056588	-2.7999E-05	494.7874669309663	64.738	0.96416	64.78	64.295	65.259	0.04248					64	25	4	0	0	0	0.027866	1	7623	7623		53.351	0	1	5015600	+		46563	23112	32281	32333	51979	51979					0.06578323240421469
LQKFALRMA	9	Unmodified	_LQKFALRMA_					0	0	0			REV__ENST00000546727.5_1_12:113545343-113557136:-|nuORF	REV__ENST00000546727.5_1_12:113545343-113557136:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.296875	2	539.315512	1076.61647	-0.33648	-0.00018147	1.2215	0.00065878	0.88504	0.00047731	539.8176737197952	58.04	0.31927	58.04	57.946	58.266	0					11	8	2	0	0	0	0.024436	1	6572	6572		38.806	3.1879	1	279770	+		46564	21911	32282	32334	51980	51980					0.08122672596095981
LQKFKAVDK	9	Unmodified	_LQKFKAVDK_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;NIPBL-SPEF2|2|fusion	nc|ENSG00000152582|Q9C093-4|SPEF2;nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7915649414062	2	538.826766	1075.63898	0.062642	3.3753E-05	3.3182	0.001788	3.3809	0.0018217	538.8283916261945	59.384	2.0904	59.196	58.509	60.599	-0.18795					77	52	2	0	0	0	0.024344	1	6529	6529		30.318	4.7437	1	153090			46565	18387;6283	32283	32335	51981	51981					0.1041859526535518
LQKFKTASAI	10	Unmodified	_LQKFKTASAI_					0	0	0			REV__ENSG00000100292|ENST00000216117|HMOX1	REV__ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830810546875	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.118	1	11137	11137		30.318	1.1477	1	6921700	+		46566	21082	32284	32336	51982	51982					0.10094577919812764
LQKGLPLP	8	Unmodified	_LQKGLPLP_					0	0	0			REV__ENST00000378119.8_1_6:24720327-24720381:-|nuORF	REV__ENST00000378119.8_1_6:24720327-24720381:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2663269042969	2	433.278921	864.543289	0.0076626	3.32E-06	2.2305	0.00096643	2.2382	0.00096975	433.2795292305066	24.578	0.21529	24.403	24.21	24.425	-0.17484					7	4	2	0	0	0	0.027866	1	1077	1077		33.516	1.5607	1	22101	+		46567	31392	32285	32337	51983	51983					0.10559867145116186
LQKGLVIK	8	Unmodified	_LQKGLVIK_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.287353515625	2	449.807845	897.601138	0.080931	3.6403E-05	0.16047	7.218E-05	0.2414	0.00010858	449.8077597957203	37.203	0.54813	36.994	36.765	37.313	-0.2092					18	13	2	0	0	0	0.027866	1	2945	2945		33.516	0	1	108610	+		46568	36762	32286	32338	51984	51984					0.1482412907056414
LQKGVGPI	8	Unmodified	_LQKGVGPI_					0	0	0			REV__ENSG00000088808|ENST00000202556|PPP1R13B	REV__ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.5475158691406	2	406.255446	810.496338	1.2883	0.00052338	2.3803	0.000967	3.6686	0.0014904	406.2563075789855	40.137	0.88595	40.137	39.771	40.657	0					45	24	3	0	0	0	0.027866	1	3508	3508		26.796	6.3143	1	394510	+		46569	20821	32287	32339	51985	51985					0.08351007593978466
LQKGVGPI	8	Unmodified	_LQKGVGPI_					0	0	0			REV__ENSG00000088808|ENST00000202556|PPP1R13B	REV__ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	406.255446	810.496338	-0.16931	-6.8784E-05	1.3112	0.00053268	1.1419	0.00046389	406.2558186429981	40.463	1.3014	40.313	39.707	41.008	-0.1497	-0.03649	-0.00095043	NaN	26.796	69	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2261300	+		46570	20821	32287	32339							0.08351007593978466
LQKGVGPI	8	Unmodified	_LQKGVGPI_					0	0	0			REV__ENSG00000088808|ENST00000202556|PPP1R13B	REV__ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	406.255446	810.496338	0.45346	0.00018422	0.65789	0.00026727	1.1113	0.00045149	406.25556583788807	40.633	1.3492	40.408	39.813	41.162	-0.225	0.05863	-0.0014812	NaN	26.796	67	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2003500	+		46571	20821	32287	32339							0.08351007593978466
LQKHDGLLVV	10	Unmodified	_LQKHDGLLVV_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.3366088867188	2	561.337498	1120.66044	0.071375	4.0065E-05	-4.3825	-0.0024601	-4.3112	-0.00242	561.3346552747912	104.84	0.43481	104.72	104.51	104.94	-0.12561					23	13	2	0	0	0	1.1265	1	13054	13054		24.519	0.31644	1	134730	+		46572	23128	32288	32340	51986	51986					0.10493980294086214
LQKHRKAPT	9	Unmodified	_LQKHRKAPT_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7926025390625	2	539.827632	1077.64071	-1.0103	-0.00054538	0.66663	0.00035986	-0.34366	-0.00018552	539.8298281694731	78.28	0.36531	78.296	78.114	78.48	0.015907					15	8	3	0	0	0	0.024487	1	9634	9634		17.365	2.7009	1	159590	+		46573	24140	32289	32341	51987	51987					0.1049964907397225
LQKIKEKLEI	10	Unmodified	_LQKIKEKLEI_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.39404296875	2	621.395013	1240.77547	-0.41964	-0.00026076	-2.6999	-0.0016777	-3.1195	-0.0019385	621.3932598253778	103.38	0.6693	103.38	103.14	103.81	-0.0046005					42	15	4	0	0	0	1.089	1	13211	13211		34.173	0	1	723940			46574	5070	32290	32342	51988	51988					0.16471664705204603
LQKKIDNIS	9	Unmodified	_LQKKIDNIS_					0	0	0		nc|ENSG00000138722|Q13201-2|MMRN1;ENSG00000138722|ENST00000264790|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8137817382812	2	529.813856	1057.61316	-0.25549	-0.00013536	-0.42876	-0.00022716	-0.68426	-0.00036253	529.8136235246992	29.299	1.1432	29.149	28.869	30.012	-0.14952					73	26	5	0	0	0	0.53979	1	1782	1782		56.721	1.9447	1	4402800			46575	5272	32291	32343	51989	51989					0.0866570102307378
LQKKKAGPGS	10	Unmodified	_LQKKKAGPGS_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.3052062988281	2	507.308741	1012.60293	-0.082507	-4.1856E-05	0.086715	4.3991E-05	0.0042082	2.1348E-06	507.3088009710188	41.465	1.2094	41.342	41.016	42.225	-0.12318					70	34	3	0	0	0	0.88896	1	3707	3707		54.776	1.8396	1	6348400			46576	6791	32292	32344	51990	51990					0.0971313808852301
LQKKKEGE	8	Unmodified	_LQKKKEGE_					0	0	0			REV__ENST00000414320.1_3_2:206928373-206950703:-|nuORF	REV__ENST00000414320.1_3_2:206928373-206950703:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2620849609375	2	480.279649	958.544745	-0.34487	-0.00016563	-0.36613	-0.00017584	-0.711	-0.00034148	480.2793548613427	28.66	0.63106	28.656	28.416	29.047	-0.0042019					30	14	3	0	0	0	0.027866	1	1729	1729		42.396	11.892	1	498950	+		46577	31887	32293	32345	51991	51991					0.06381456443239131
LQKKTKIALEH	11	Unmodified	_LQKKTKIALEH_					0	0	0		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.75372314453125	3	436.938117	1307.79252	-0.041845	-1.8284E-05	4.0496	0.0017694	4.0078	0.0017511	436.93990081104226	49.649	1.0962	49.544	48.837	49.933	-0.10558					40	28	2	0	0	0	0.024759	1	4973	4973		17.833	2.4957	1	184060			46578	4297	32294	32346	51992	51992					0.15093585311001334
LQKKVMIHSR	10	Unmodified	_LQKKVMIHSR_					0	0	0		ENST00000555843.5_1_14:31576128-31576170:-|nuORF	ENST00000555843.5_1_14:31576128-31576170:-|nuORF	ENST00000555843.5_1_14:31576128-31576170:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.2406311035156	3	413.916658	1238.72815	0.20594	8.5241E-05	4.2436	0.0017565	4.4495	0.0018417	413.9186213838994	33.829	0.51446	33.825	33.637	34.152	-0.0045624					20	12	2	0	0	0	0.03519	1	2499	2499		38.754	13.628	1	141240			46579	16695	32295	32347	51993	51993					0.11833106953235983
LQKLDYGT	8	Unmodified	_LQKLDYGT_					0	0	0			REV__nc|ENSG00000180902|Q8N465-2|D2HGDH	REV__nc|ENSG00000180902|Q8N465-2|D2HGDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7691650390625	2	469.2531	936.491647	-0.04071	-1.9103E-05	0.82635	0.00038777	0.78564	0.00036867	469.2522901507637	64.766	0.33743	64.803	64.707	65.045	0.037384					10	8	2	0	0	0	0.027866	1	7580	7580		31.955	0	1	82836	+		46580	27371	32296	32348	51994	51994					0.0208607866057946
LQKLEAANI	9	Unmodified	_LQKLEAANI_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.80584716796875	2	500.295299	998.576045	0.41693	0.00020859	-1.5386	-0.00076976	-1.1217	-0.00056117	500.2944355646522	42.382	0.3467	42.382	42.187	42.534	0					15	9	2	0	0	0	0.022587	1	3867	3867		30.318	5.7985	1	146170	+		46581	25823	32297	32349	51995	51995					0.07670029477310436
LQKLSLDNEG	10	Unmodified	_LQKLSLDNEG_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.5916748046875	2	558.798403	1115.58225	-0.45791	-0.00025588	1.4054	0.00078532	0.94746	0.00052944	558.7991306866883	42.204	0.87235	41.972	41.733	42.605	-0.23186					56	23	3	0	0	0	0.03519	1	3808	3808		49.442	12.282	1	2249700			46582	9963	32298	32350	51996	51996					0.029085029181715072
LQKLSLHSD	9	Unmodified	_LQKLSLHSD_					0	0	0			REV__ENST00000404488.7_1_22:50319154-50321136:+|nuORF	REV__ENST00000404488.7_1_22:50319154-50321136:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.823974609375	2	520.790381	1039.56621	0.020618	1.0738E-05	-4.409	-0.0022962	-4.3884	-0.0022854	520.7882069496093	81.437	0.58138	81.208	80.898	81.479	-0.2289					15	13	2	0	0	0	0.024292	1	9785	9785		40.778	0	1	49532	+		46583	31901	32299	32351	51997	51997					0.048008414719333814
LQKMKRIL	8	Unmodified	_LQKMKRIL_					0	0	0		ENST00000379463.6_1_16:66850506-66850557:-|nuORF	ENST00000379463.6_1_16:66850506-66850557:-|nuORF	ENST00000379463.6_1_16:66850506-66850557:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2816772460938	2	515.333704	1028.65286	-0.67838	-0.00034959	0.079041	4.0732E-05	-0.59934	-0.00030886	515.3341639116755	65.26	0.40467	65.26	65.055	65.46	0					21	11	3	0	0	0	0.027866	1	7709	7709		28.254	0	1	327870			46584	13264	32300	32352	51998	51998					0.13967549492826947
LQKMNKLRE	9	Unmodified	_LQKMNKLRE_					0	0	0		ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	580.7901000976562	2	580.334433	1158.65431	-0.9234	-0.00053588	-2.6253	-0.0015235	-3.5487	-0.0020594	580.3329229952898	50.996	0.72229	51.083	50.855	51.577	0.087009					23	19	2	0	0	0	0.024405	1	5390	5390		27.882	0	1	137530			46585	8149	32301	32353	51999	51999					0.08133138790913108
LQKPGGRGAL	10	Unmodified	_LQKPGGRGAL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.8004150390625	2	498.801083	995.587613	0.016044	8.003E-06	-0.87456	-0.00043623	-0.85851	-0.00042823	498.8004728359334	28.445	0.89483	28.526	28.124	29.018	0.080811					71	21	6	0	0	0	0.96965	1	1606	1606		49.442	3.4896	1	3023500			46586	8077	32302	32354	52000	52000					0.0896427129133599
LQKPHSHW	8	Unmodified	_LQKPHSHW_					0	0	0		ENST00000467530.5_1_1:85961119-85961329:-|nuORF	ENST00000467530.5_1_1:85961119-85961329:-|nuORF	ENST00000467530.5_1_1:85961119-85961329:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7352294921875	2	516.772326	1031.5301	-0.48833	-0.00025236	-2.1709	-0.0011219	-2.6592	-0.0013742	516.7709084636631	43.531	0.62218	43.419	43.071	43.693	-0.11253					25	16	2	0	0	0	0.027866	1	4024	4024		50.025	18.07	1	316640			46587	14841	32303	32355	52001	52001					0.015594290857507076
LQKPKTPTKL	10	Unmodified	_LQKPKTPTKL_					0	0	0			REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3663940429688	2	577.368798	1152.72304	-0.040808	-2.3561E-05	-3.8221	-0.0022067	-3.8629	-0.0022303	577.3664534876788	101.22	0.73849	101.09	100.81	101.55	-0.12576					52	16	4	0	0	0	1.0508	1	12570	12570		39.253	7.723	1	981470	+		46588	36447	32304	32356	52002	52002					0.15279126362247553
LQKPLAPL	8	Unmodified	_LQKPLAPL_					0	0	0			REV__COL6A3|p.Q810K|1|0.25|ENSG00000163359|chr2:237378705-237378705|G/T|missense_variant	REV__COL6A3|p.Q810K|1|0.25|ENSG00000163359|chr2:237378705-237378705|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.7763977050781	2	440.286746	878.558939	-0.5006	-0.00022041	1.3732	0.00060458	0.87256	0.00038418	440.2867511369116	22.082	0.47496	21.892	21.663	22.138	-0.18912					15	9	3	0	0	0	0.027866	1	745	745		20.482	1.1219	1	41667	+		46589	19514	32305	32357	52003	52003					0.11480153662159864
LQKPLAPL	8	Unmodified	_LQKPLAPL_					0	0	0			REV__COL6A3|p.Q810K|1|0.25|ENSG00000163359|chr2:237378705-237378705|G/T|missense_variant	REV__COL6A3|p.Q810K|1|0.25|ENSG00000163359|chr2:237378705-237378705|G/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	440.286746	878.558939	0.098346	4.33E-05	0.95449	0.00042025	1.0528	0.00046355	440.28687681277063	21.994	0.38005	21.805	21.531	21.911	-0.18894	-0.028998	-0.00022368	NaN	13.775	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28700	+		46590	19514	32305	32357							0.11480153662159864
LQKPRAFILK	10	Unmodified	_LQKPRAFILK_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MSMS	OPSCC_39_ClassI_Rep-2	2	405.2662658691406	3	405.264164	1212.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.32	1	113.3	112.8	113.8	-0.014664								0	0	0	0.77833	1	14090	14090		7.0187	2.4061	1				46591	2071	32306	32358	52004	52004					0.17278825353128013
LQKQRKLI	8	Unmodified	_LQKQRKLI_					0	0	0			REV__CSRNP2|p.R62Q|1|0.26|ENSG00000110925|chr12:51074049-51074049|C/T|missense_variant	REV__CSRNP2|p.R62Q|1|0.26|ENSG00000110925|chr12:51074049-51074049|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8182373046875	2	513.842751	1025.67095	0.66635	0.0003424	1.5293	0.00078581	2.1956	0.0011282	513.8445067924063	72.523	0.32556	72.242	72.139	72.465	-0.28124					9	7	2	0	0	0	0.027866	1	8815	8815		71.378	0	1	77400	+		46592	19621	32307	32359	52005	52005					0.15914007739161207
LQKRERLRHTW	11	Unmodified	_LQKRERLRHTW_					0	0	0			REV__ENSG00000269791|ENST00000595235|SSX4B;REV__nc|ENSG00000171483|Q7RTT6|SSX6P	REV__ENSG00000269791|ENST00000595235|SSX4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.808837890625	3	508.295297	1521.86406	-0.68282	-0.00034707	2.394	0.0012168	1.7111	0.00086977	508.2966188652192	61.451	0.53513	61.194	60.848	61.383	-0.25725					18	12	2	0	0	0	0.024801	1	6875	6875		8.7993	5.7733	1	281460	+		46593	29151;36931	32308	32360	52006	52006					0.12400517788250909
LQKRFRKL	8	Unmodified	_LQKRFRKL_					0	0	0			REV__ENSG00000131044|ENST00000535842|TTLL9	REV__ENSG00000131044|ENST00000535842|TTLL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.257080078125	2	544.856193	1087.69783	-0.3688	-0.00020094	0.11247	6.1279E-05	-0.25633	-0.00013966	544.8561438433876	25.216	0.5888	25.046	24.825	25.413	-0.17078					28	13	3	0	0	0	0.027866	1	1183	1183		8.2313	0	1	254830	+		46594	23184	32309	32361	52007	52007					0.1574911635036642
LQKRGLVPS	9	Unmodified	_LQKRGLVPS_					0	0	0			REV__ENST00000382734.9_1_22:25844136-25844199:+|nuORF	REV__ENST00000382734.9_1_22:25844136-25844199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.771484375	2	499.311284	996.608014	-0.74769	-0.00037333	0.46164	0.0002305	-0.28605	-0.00014283	499.3114006205519	28.785	0.34077	28.635	28.444	28.784	-0.14952					12	7	2	0	0	0	0.024541	1	1677	1677		11.511	0	1	59240	+		46595	31546	32310	32362	52008	52008					0.10957441951131841
LQKRQGIP	8	Unmodified	_LQKRQGIP_					0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.2215881347656	2	470.290351	938.566149	-0.01313	-6.1751E-06	3.8086	0.0017912	3.7955	0.001785	470.29179649562155	68.058	0.47887	67.819	67.669	68.148	-0.23814					17	11	2	0	0	0	0.027866	1	7891	7891		24.203	0	1	76209			46596	8333	32311	32363	52009	52009					0.09440886262598269
LQKRSRRKHIL	11	Unmodified	_LQKRSRRKHIL_					0	0	0		ENST00000559454.5_1_15:49462693-49462759:+|nuORF	ENST00000559454.5_1_15:49462693-49462759:+|nuORF	ENST00000559454.5_1_15:49462693-49462759:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.79156494140625	3	478.975788	1433.90553	-0.10122	-4.8482E-05	-2.759	-0.0013215	-2.8602	-0.00137	478.97444462650077	45.206	1.3636	45.106	44.594	45.958	-0.099445					89	37	3	0	0	0	0.024869	1	4363	4363		6.3209	0.90796	1	578310			46597	16779	32312	32364	52010	52010					0.2059369854760007
LQKRSRRKHIL	11	Unmodified	_LQKRSRRKHIL_					0	0	0		ENST00000559454.5_1_15:49462693-49462759:+|nuORF	ENST00000559454.5_1_15:49462693-49462759:+|nuORF	ENST00000559454.5_1_15:49462693-49462759:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.78167724609375	3	478.975788	1433.90553	-0.98532	-0.00047195	-2.0574	-0.00098544	-3.0427	-0.0014574	478.97468132409216	43.723	1.2357	43.486	43.247	44.483	-0.23736					100	33	4	0	0	0	0.024882	1	4068	4068		8.4073	0.37291	1	1190900			46598	16779	32312	32364	52011	52011					0.2059369854760007
LQKSCRPK	8	Unmodified	_LQKSCRPK_					0	0	0		ENST00000564288.5_2_1:39853446-39853539:+|nuORF	ENST00000564288.5_2_1:39853446-39853539:+|nuORF	ENST00000564288.5_2_1:39853446-39853539:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29229736328125	2	480.276386	958.53822	-0.56081	-0.00026934	-1.1146	-0.00053532	-1.6754	-0.00080466	480.2757039601131	65.086	0.21492	65.086	64.909	65.124	0					8	5	2	0	0	0	0.027866	1	7691	7691		23.042	0	1	118410			46599	16884	32313	32365	52012	52012					0.05729240010862213
LQKSLIKYN	9	Unmodified	_LQKSLIKYN_					0	0	0		ENST00000429544.6_1_3:129150256-129150340:-|nuORF	ENST00000429544.6_1_3:129150256-129150340:-|nuORF	ENST00000429544.6_1_3:129150256-129150340:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8306274414062	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	0.89441	1	11281	11281		32.812	2.4947	1	4967900			46600	14149	32314	32366	52013	52013					0.10094577919812764
LQKVIATIN	9	Unmodified	_LQKVIATIN_					0	0	0			REV__ENSG00000157470|ENST00000288228|FAM81A	REV__ENSG00000157470|ENST00000288228|FAM81A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.770751953125	2	500.313492	998.612431	0.061022	3.053E-05	-0.26384	-0.000132	-0.20282	-0.00010147	500.31321802823766	65.516	0.45233	65.553	65.254	65.706	0.037384					18	12	2	0	0	0	0.024427	1	7667	7667		26.693	0	1	156360	+		46601	25133	32315	32367	52014	52014					0.11306906374045411
LQKYLIARQQ	10	Unmodified	_LQKYLIARQQ_					0	0	0			REV__ENST00000437757.1_9:45949416-45949632:+|nuORF	REV__ENST00000437757.1_9:45949416-45949632:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.5231018066406	3	420.918945	1259.73501	0.71166	0.00029955	0.58648	0.00024686	1.2981	0.00054641	421.25358391929166	19.183	0.7441	18.983	18.761	19.505	-0.2001					26	14	3	0	0	0	0.03519	1	407	407		20.03	0	1	65026	+		46602	32486	32316	32368	52015	52015					0.11552743105471563
LQKYYVPLL	9	Unmodified	_LQKYYVPLL_					0	0	0			REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.8532104492188	2	568.839342	1135.66413	0.53107	0.00030209	-4.4293	-0.0025195	-3.8982	-0.0022175	568.8363961796261	101.3	0.17783	101.16	101.04	101.22	-0.13156					5	3	2	0	0	0	0.024386	1	12568	12568		42.474	0	1	21987	+		46603	24788	32317	32369	52016	52016					0.10172650067943323
LQLACAKLI	9	Unmodified	_LQLACAKLI_					0	0	0		nc|ENSG00000290837|Q49AS3|LRRC37A5P	nc|ENSG00000290837|Q49AS3|LRRC37A5P	nc|ENSG00000290837|Q49AS3|LRRC37A5P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.8135681152344	2	486.799163	971.583773	0.19916	9.6951E-05	2.9943	0.0014576	3.1934	0.0015546	486.8008563176812	21.401	0.52759	21.223	20.87	21.397	-0.17721					14	10	2	0	0	0	0.024541	1	682	682		17.365	3.5896	1	39389			46604	18831	32318	32370	52017	52017					0.09684465473253567
LQLAKKAF	8	Unmodified	_LQLAKKAF_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2770690917969	2	459.792195	917.569838	1.0249	0.00047125	2.8341	0.0013031	3.859	0.0017743	459.7933658215272	20.074	0.62911	19.874	19.653	20.282	-0.2001					24	12	3	0	0	0	0.027866	1	534	534		12.959	8.2774	1	262410			46605	1253	32319	32371	52018	52018					0.10775556036458056
LQLAKKAF	8	Unmodified	_LQLAKKAF_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	459.792195	917.569838	0.062446	2.8712E-05	3.6794	0.0016917	3.7418	0.0017205	459.7937636022105	20.011	0.52738	19.843	19.62	20.147	-0.16774	-0.026475	0.00046218	NaN	12.959	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257610			46606	1253	32319	32371							0.10775556036458056
LQLAKKAF	8	Unmodified	_LQLAKKAF_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	459.792195	917.569838	0.61187	0.00028133	3.2688	0.001503	3.8806	0.0017843	459.793535401943	20.115	0.4865	19.891	19.68	20.167	-0.22344	0.021961	8.4609E-05	NaN	12.959	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203400			46607	1253	32319	32371							0.10775556036458056
LQLALNQQ	8	Unmodified	_LQLALNQQ_					0	0	0			REV__ENSG00000184110|ENST00000331666|EIF3C	REV__ENSG00000184110|ENST00000331666|EIF3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2793273925781	2	464.266542	926.51853	-0.6214	-0.00028849	-0.30681	-0.00014244	-0.9282	-0.00043093	464.26682678049195	50.479	0.43141	50.479	50.178	50.609	0					18	12	2	0	0	0	0.027866	1	5267	5267		18.324	0	1	162030	+		46608	27636	32320	32372	52019	52019					0.05233187271744555
LQLCLRRRR	9	Unmodified	_LQLCLRRRR_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9000549316406	3	405.252264	1212.73496	-0.69605	-0.00028208	3.8077	0.0015431	3.1117	0.001261	405.25367706915677	28.554	0.28405	28.309	28.121	28.406	-0.24524					11	6	2	0	0	0	0.024541	1	1688	1688		17.468	0.75062	1	55129	+		46609	23909	32321	32373	52020	52020					0.137104646244552
LQLDPKMSR	9	Unmodified	_LQLDPKMSR_					0	0	0		ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	ENST00000369075.7_1_10:121658127-121658223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8316040039062	2	544.300059	1086.58556	-0.1677	-9.1277E-05	0.15854	8.6292E-05	-0.0091573	-4.9843E-06	544.8018901474134	71.732	0.26381	71.443	71.273	71.537	-0.28858					8	6	2	0	0	0	0.024397	1	8674	8674		47.657	31.184	1	72609			46610	12914	32322	32374	52021	52021					0.045734744911896996
LQLEEQKQIRI	11	Unmodified	_LQLEEQKQIRI_					0	0	0		ENSG00000152527|ENST00000282406|PLEKHH2;PLEKHH2|p.Y325Lfs*6|1|0.07|ENSG00000152527|chr2:43699930-43699931|-/T|frameshift_variant;PLEKHH2|p.W360Nfs*6|1|0.07|ENSG00000152527|chr2:43700035-43700036|-/AATTC|frameshift_variant;nc|ENSG00000152527|Q8IVE3-3|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF	ENSG00000152527|ENST00000282406|PLEKHH2	ENSG00000152527|ENST00000282406|PLEKHH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.6083068847656	3	466.608548	1396.80381	0.024909	1.1623E-05	-1.1059	-0.000516	-1.0809	-0.00050438	466.60793572858927	100.17	2.0135	100.17	99.98	101.99	0					84	47	2	0	0	0	1.0811	1	12842	12842		16.53	0.6092	1	846240			46611	6279	32323	32375	52022	52022					0.12128362614498656
LQLEEQKQIRI	11	Unmodified	_LQLEEQKQIRI_					0	0	0		ENSG00000152527|ENST00000282406|PLEKHH2;PLEKHH2|p.Y325Lfs*6|1|0.07|ENSG00000152527|chr2:43699930-43699931|-/T|frameshift_variant;PLEKHH2|p.W360Nfs*6|1|0.07|ENSG00000152527|chr2:43700035-43700036|-/AATTC|frameshift_variant;nc|ENSG00000152527|Q8IVE3-3|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF	ENSG00000152527|ENST00000282406|PLEKHH2	ENSG00000152527|ENST00000282406|PLEKHH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.60809326171875	3	466.608548	1396.80381	0.19292	9.0016E-05	-1.0768	-0.00050242	-0.88384	-0.00041241	466.6079363438645	99.826	0.91731	99.837	99.179	100.1	0.010109					66	22	4	0	0	0	1.0621	1	12700	12700		21.78	0	1	854030			46612	6279	32323	32375	52023	52023					0.12128362614498656
LQLEHKLI	8	Unmodified	_LQLEHKLI_					0	0	0			REV__ENSG00000161040|ENST00000440067|FBXL13	REV__ENSG00000161040|ENST00000440067|FBXL13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2626037597656	2	497.30821	992.601866	-0.43028	-0.00021398	-0.39515	-0.00019651	-0.82544	-0.0004105	497.3078466426677	49.182	0.73248	48.903	48.429	49.161	-0.27977					33	19	2	0	0	0	0.027866	1	4846	4846		42.396	7.1954	1	263280	+		46613	25372	32324	32376	52024	52024					0.10526923719623937
LQLELAQLL	9	Unmodified	_LQLELAQLL_					0	0	0			REV__ENSG00000132170|ENST00000651735|PPARG	REV__ENSG00000132170|ENST00000651735|PPARG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2734985351562	2	520.82115	1039.62775	0.057849	3.0129E-05	-0.64322	-0.000335	-0.58537	-0.00030487	520.8206806933482	90.809	0.29153	90.82	90.659	90.95	0.011276					10	6	2	0	0	0	0.024344	1	11424	11424		45.972	1.4412	1	46903	+		46614	23258	32325	32377	52025	52025					0.10951773171223067
LQLERLVRGPK	11	Unmodified	_LQLERLVRGPK_					0	0	0			REV__ENSG00000198879|ENST00000397167|SFMBT2	REV__ENSG00000198879|ENST00000397167|SFMBT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8813171386719	3	436.941861	1307.80375	0.30545	0.00013347	1.7373	0.00075908	2.0427	0.00089254	436.9419751484819	39.809	0.38544	39.579	39.275	39.66	-0.2302					16	9	3	0	0	0	0.024811	1	3341	3341		55.721	14.641	1	119880	+		46615	28505	32326	32378	52026	52026					0.1621640740515886
LQLFAKGC	8	Unmodified	_LQLFAKGC_					0	0	0			REV__ENSG00000175213|ENST00000311764|ZNF408	REV__ENSG00000175213|ENST00000311764|ZNF408	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2523498535156	2	440.241481	878.468409	0.41325	0.00018193	-2.6474	-0.0011655	-2.2341	-0.00098356	440.2401932549563	90.037	0.82217	90.051	89.756	90.578	0.013443					34	19	2	0	0	0	0.027866	1	11297	11297		7.6903	0	1	461990	+		46616	26929	32327	32379	52027	52027					0.024313613422577873
LQLFHRDC	8	Carbamidomethyl (C)	_LQLFHRDC(Carbamidomethyl (C))_	LQLFHRDC(1)		LQLFHRDC(91)		0	1	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3201293945312	2	544.768926	1087.5233	-0.94353	-0.00051401	-3.7434	-0.0020393	-4.6869	-0.0025533	544.7671804712878	72.965	0.52587	72.965	72.656	73.182	0					21	12	2	0	0	0	0.027866	1	8848	8848		90.777	16.522	1	147580			46617	10033	32328	32380	52028	52028	140				-0.016962518571290275
LQLFRRGEI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LQLFRRGEI_					1	0	0		ENST00000515558.1_1_5:126394507-126407313:-|nuORF	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.3439331054688	2	587.340572	1172.66659	-0.4487	-0.00026354	3.42	0.0020087	2.9713	0.0017452	587.3424594889474	88.841	1.004	88.703	88.398	89.402	-0.13757					56	23	3	0	0	0	0.50848	1	10816	10816		58.782	9.3404	1	703920			46618	15902	32329	32381	52029	52029					0.08716498525609495
LQLFSPDKF	9	Unmodified	_LQLFSPDKF_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.7657470703125	2	547.797675	1093.5808	-1.2493	-0.00068438	-2.9173	-0.0015981	-4.1667	-0.0022825	547.7957340096076	29.364	0.76395	29.443	29.202	29.966	0.078344					25	18	2	0	0	0	0.022832	1	1796	1796		82.241	36.268	1	223580	+		46619	28084	32330	32382	52030	52030					0.03774913620077314
LQLFVFSPN	9	Unmodified	_LQLFVFSPN_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2;REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.77490234375	2	532.792392	1063.57023	-1.0951	-0.00058345	-2.5278	-0.0013468	-3.6229	-0.0019302	532.7908609730682	50.352	0.4926	50.352	50.084	50.577	0					40	14	4	0	0	0	0.024418	1	5303	5303		37.812	0	1	1845500	+		46620	21364;35380	32331	32383	52031	52031					0.04098930965665204
LQLGAGESTV	10	Unmodified	_LQLGAGESTV_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7681884765625	2	487.761289	973.508025	0.074742	3.6456E-05	0.062119	3.0299E-05	0.13686	6.6755E-05	487.7612513394715	36.912	0.90719	36.848	36.508	37.415	-0.063385					76	23	6	0	0	0	0.74632	1	2973	2973		64.207	6.396	1	5305800	+		46621	26558	32332	32384	52032	52032					0.020211598266769215
LQLGKKNP	8	Unmodified	_LQLGKKNP_					0	0	0		ENST00000381340.7_1_12:26491267-26491405:-|nuORF	ENST00000381340.7_1_12:26491267-26491405:-|nuORF	ENST00000381340.7_1_12:26491267-26491405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2633972167969	2	449.279452	896.544351	-0.42929	-0.00019287	0.49023	0.00022025	0.060934	2.7376E-05	449.2796333387805	60.863	0.78557	60.65	60.31	61.096	-0.21339					48	20	3	0	0	0	0.027866	1	7039	7039		55.504	25.001	1	1670800			46622	13338	32333	32385	52033	52033					0.09194081514033314
LQLGLPIEP	9	Unmodified	_LQLGLPIEP_					0	0	0			REV__ENSG00000223510|ENST00000420162|CDRT15	REV__ENSG00000223510|ENST00000420162|CDRT15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.27679443359375	2	490.294768	978.574983	-1.1959	-0.00058634	0.43825	0.00021487	-0.75764	-0.00037147	490.2947149880679	64.826	0.49405	64.563	64.379	64.873	-0.2626					26	12	3	0	0	0	0.024292	1	7650	7650		58.782	4.0056	1	509130	+		46623	28850	32334	32386	52034	52034					0.08483815108422732
LQLIASPLY	9	Unmodified	_LQLIASPLY_					0	0	0			REV__ENSG00000154165|ENST00000284311|GPR15	REV__ENSG00000154165|ENST00000284311|GPR15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.29705810546875	2	509.302593	1016.59063	0.26762	0.0001363	2.7791	0.0014154	3.0468	0.0015517	509.3037734417842	72.624	0.95952	72.634	72.331	73.291	0.0097733					52	23	3	0	0	0	0.024374	1	8850	8850		40.778	11.629	1	1225000	+		46624	24944	32335	32387	52035	52035					0.08300101625457046
LQLIASPLY	9	Unmodified	_LQLIASPLY_					0	0	0			REV__ENSG00000154165|ENST00000284311|GPR15	REV__ENSG00000154165|ENST00000284311|GPR15	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.302593	1016.59063	-0.18364	-9.3529E-05	4.3525	0.0022167	4.1688	0.0021232	509.3040834898419	72.595	1.0749	72.595	72.252	73.327	0	-0.053283	0.0013527	NaN	24.519	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1127500	+		46625	24944	32335	32387							0.08300101625457046
LQLIASPLY	9	Unmodified	_LQLIASPLY_					0	0	0			REV__ENSG00000154165|ENST00000284311|GPR15	REV__ENSG00000154165|ENST00000284311|GPR15	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.302593	1016.59063	0.30976	0.00015776	3.5415	0.0018037	3.8513	0.0019615	509.3036970314082	72.996	1.1045	72.715	72.344	73.449	-0.28124	0.067137	0.00052666	NaN	24.519	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1188000	+		46626	24944	32335	32387							0.08300101625457046
LQLILEEVY	9	Unmodified	_LQLILEEVY_					0	0	0			REV__ENSG00000115904|ENST00000402219|SOS1	REV__ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7669677734375	2	560.31844	1118.62233	-0.44093	-0.00024706	0.99427	0.00055711	0.55334	0.00031005	560.3189061745588	23.128	0.59747	22.948	22.559	23.156	-0.18027					23	12	2	0	0	0	0.024541	1	841	841		9.7057	0	1	41803	+		46627	22239	32336	32388	52036	52036					0.06776049588756905
LQLIPAEY	8	Unmodified	_LQLIPAEY_					0	0	0		ENST00000476683.1_1_3:38671674-38674684:-|nuORF	ENST00000476683.1_1_3:38671674-38674684:-|nuORF	ENST00000476683.1_1_3:38671674-38674684:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.23284912109375	2	473.765843	945.517133	-0.12405	-5.877E-05	-2.8543	-0.0013523	-2.9784	-0.001411	473.76422285012575	40.79	0.55833	40.565	40.332	40.89	-0.225					36	14	4	0	0	0	0.027866	1	3516	3516		42.474	18.272	1	710510			46628	15093	32337	32389	52037	52037					0.04219553182997515
LQLIPAEY	8	Unmodified	_LQLIPAEY_					0	0	0		ENST00000476683.1_1_3:38671674-38674684:-|nuORF	ENST00000476683.1_1_3:38671674-38674684:-|nuORF	ENST00000476683.1_1_3:38671674-38674684:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.765843	945.517133	-0.28954	-0.00013717	-2.6074	-0.0012353	-2.897	-0.0013725	473.76431446794237	40.643	0.63052	40.494	40.225	40.855	-0.14869	-0.057178	-0.00027082	NaN	33.516	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	815150			46629	15093	32337	32389							0.04219553182997515
LQLKALNA	8	Unmodified	_LQLKALNA_					0	0	0			REV__ENSG00000101997|ENST00000376227|CCDC22	REV__ENSG00000101997|ENST00000376227|CCDC22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.7559814453125	2	435.774003	869.533452	1.7535	0.00076412	-3.7692	-0.0016425	-2.0158	-0.00087842	435.77311441373195	63.369	0.35711	63.423	63.162	63.519	0.054104					13	9	2	0	0	0	0.027866	1	7343	7343		25.45	0	1	202100	+		46630	21274	32338	32390	52038	52038					0.09346679139753178
LQLKCLHG	8	Unmodified	_LQLKCLHG_					0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.8875732421875	2	456.260205	910.505857	0.014513	6.6218E-06	2.1508	0.00098132	2.1653	0.00098794	456.25956442885786	37.447	0.93764	37.479	37.264	38.202	0.032269					36	25	3	0	0	0	0.027866	1	3103	3103		42.474	0	1	234070	+		46631	27790	32339	32391	52039	52039					0.047024526078757845
LQLKGSHDSF	10	Unmodified	_LQLKGSHDSF_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.31298828125	2	566.293288	1130.57202	-0.17925	-0.00010151	-2.7121	-0.0015358	-2.8913	-0.0016373	566.7956659193353	34.574	0.12288	34.367	34.284	34.406	-0.20695					4	2	2	0	0	0	0.03519	1	2560	2560		44.377	6.5657	1	27109	+		46632	21307	32340	32392	52040	52040					0.011959399836086959
LQLKKEAA	8	Unmodified	_LQLKKEAA_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.24505615234375	2	450.779285	899.544017	-0.060248	-2.7159E-05	0.30923	0.00013939	0.24898	0.00011224	450.77962798927314	31.242	0.19832	31.001	30.875	31.073	-0.24109					6	4	2	0	0	0	0.027866	1	2041	2041		40.778	0	1	24599			46633	10167	32341	32393	52041	52041					0.09022661794176656
LQLKKEAA	8	Unmodified	_LQLKKEAA_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.779285	899.544017	-0.42228	-0.00019035	0.64958	0.00029282	0.2273	0.00010246	450.7794507093245	31.507	0.61134	31.355	31.045	31.657	-0.15231	0.17704	9.1336E-05	NaN	40.778	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44275			46634	10167	32341	32393							0.09022661794176656
LQLKMSILQ	9	Oxidation (M)	_LQLKM(Oxidation (M))SILQ_		LQLKM(1)SILQ		LQLKM(80)SILQ	0	0	1		ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3195190429688	2	545.32046	1088.62637	-0.31376	-0.0001711	-3.0816	-0.0016805	-3.3954	-0.0018516	545.3186145397407	73.013	0.87337	72.732	72.465	73.338	-0.28124					57	21	4	0	0	0	0.26966	1	8865	8865		79.713	7.8351	1	2117300			46635	985	32342	32394	52042	52042		27			0.08559815810826876
LQLKPPQPQ	9	Unmodified	_LQLKPPQPQ_					0	0	0			REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.79833984375	2	524.811116	1047.60768	-1.2719	-0.00066749	0.98813	0.00051858	-0.28373	-0.0001489	524.8113366137337	39.701	0.57649	39.588	39.291	39.867	-0.11222					29	15	3	0	0	0	0.024506	1	3437	3437		23.042	0	1	174990	+		46636	28855	32343	32395	52043	52043					0.08578022231267823
LQLKPRTV	8	Unmodified	_LQLKPRTV_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.25567626953125	2	477.808377	953.6022	0.14741	7.0435E-05	-0.47236	-0.0002257	-0.32495	-0.00015526	477.80804156128073	41.558	0.74366	41.581	41.111	41.854	0.023006					31	20	2	0	0	0	0.027866	1	3697	3697		63.306	7.8021	1	286160			46637	2808	32344	32396	52044	52044					0.12354343439460536
LQLKSFDDE	9	Unmodified	_LQLKSFDDE_					0	0	0			REV__nc|ENSG00000166845|Q8IYD9|LAS2	REV__nc|ENSG00000166845|Q8IYD9|LAS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.7657470703125	2	547.771854	1093.52915	-1.5553	-0.00085194	-0.05545	-3.0374E-05	-1.6107	-0.00088232	547.7717212017894	29.653	0.4772	29.731	29.489	29.966	0.078344					27	11	3	0	0	0	0.35646	1	1796	1796		68.787	4.5796	1	974900	+		46638	26064	32345	32397	52045	52045					-0.013868748644881634
LQLLCENH	8	Unmodified	_LQLLCENH_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2884521484375	2	485.244752	968.474951	0.22716	0.00011023	3.6434	0.001768	3.8706	0.0018782	485.2466312299599	18.016	0.19554	17.884	17.811	18.006	-0.13147					6	3	2	0	0	0	0.027866	1	229	229		45.952	13.997	1	14990			46639	6165;2051;3956	32346	32398	52046	52046					-0.01054745497026488
LQLLFSTSF	9	Unmodified	_LQLLFSTSF_					0	0	0		ENST00000264645.11_1_17:38327614-38327764:+|nuORF	ENST00000264645.11_1_17:38327614-38327764:+|nuORF	ENST00000264645.11_1_17:38327614-38327764:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.288330078125	2	528.292225	1054.5699	-0.82092	-0.00043369	0.86539	0.00045718	0.044471	2.3494E-05	528.2924165687267	57.353	0.4586	57.353	57.073	57.532	0					18	11	2	0	0	0	0.024381	1	6467	6467		15.642	0	1	628510			46640	11566	32347	32399	52047	52047					0.044795112457904906
LQLLFSTSF	9	Unmodified	_LQLLFSTSF_					0	0	0		ENST00000264645.11_1_17:38327614-38327764:+|nuORF	ENST00000264645.11_1_17:38327614-38327764:+|nuORF	ENST00000264645.11_1_17:38327614-38327764:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.292225	1054.5699	-0.82085	-0.00043365	1.8505	0.00097759	1.0296	0.00054394	528.2928678145933	57.555	0.27121	57.377	57.242	57.514	-0.17775	-0.010098	0.0015005	NaN	10.265	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92998			46641	11566	32347	32399							0.044795112457904906
LQLLFSTSF	9	Unmodified	_LQLLFSTSF_					0	0	0		ENST00000264645.11_1_17:38327614-38327764:+|nuORF	ENST00000264645.11_1_17:38327614-38327764:+|nuORF	ENST00000264645.11_1_17:38327614-38327764:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.292225	1054.5699	-0.57682	-0.00030473	1.3801	0.00072908	0.80325	0.00042435	528.2924225245208	57.714	0.38647	57.481	57.237	57.624	-0.23363	0.093655	0.0010035	NaN	10.265	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153310			46642	11566	32347	32399							0.044795112457904906
LQLMADQP	8	Unmodified	_LQLMADQP_					0	0	0		ENST00000238561.9_1_14:78399580-78399649:+|nuORF	ENST00000238561.9_1_14:78399580-78399649:+|nuORF	ENST00000238561.9_1_14:78399580-78399649:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2584533691406	2	458.233853	914.453153	0.50298	0.00023048	-0.49258	-0.00022571	0.010404	4.7673E-06	458.2335687814253	61.488	0.35403	61.559	61.276	61.63	0.071129					13	8	2	0	0	0	0.027866	1	7018	7018		33.516	3.0119	1	80658			46643	11268	32348	32400	52048	52048					-0.0074955024559812955
LQLMEEQLA	9	Unmodified	_LQLMEEQLA_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7976684570312	2	537.778625	1073.5427	-0.19526	-0.00010501	-0.22359	-0.00012024	-0.41886	-0.00022525	537.7784804556487	77.317	0.55293	77.317	76.998	77.551	0					20	12	2	0	0	0	0.024527	1	9575	9575		24.519	0	1	282180	+		46644	22450	32349	32401	52049	52049					0.008866596431289508
LQLMHILPL	9	Unmodified	_LQLMHILPL_					0	0	0			REV__ENST00000312521.8_1_3:24020009-24020150:+|nuORF	REV__ENST00000312521.8_1_3:24020009-24020150:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.29638671875	2	539.328088	1076.64162	-0.69281	-0.00037365	3.3026	0.0017812	2.6097	0.0014075	539.3290015851701	58.209	0.43871	58.301	58.084	58.523	0.091217					16	11	2	0	0	0	0.024412	1	6483	6483		50.025	20.875	1	146580	+		46645	30221	32350	32402	52050	52050					0.10636727398673429
LQLNRASDV	9	Unmodified	_LQLNRASDV_					0	0	0			REV__ENSG00000102910|ENST00000285737|LONP2	REV__ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80291748046875	2	508.28018	1014.54581	0.29003	0.00014742	3.5808	0.00182	3.8708	0.0019675	508.28113997811533	36.963	0.38813	36.77	36.578	36.966	-0.193					18	9	3	0	0	0	0.024292	1	2938	2938		49.442	20.292	1	185880	+		46646	21340	32351	32403	52051	52051					0.03911670812135526
LQLPNELHG	9	Unmodified	_LQLPNELHG_					0	0	0		ENST00000508385.5_1_4:2800942-2822352:+|nuORF	ENST00000508385.5_1_4:2800942-2822352:+|nuORF	ENST00000508385.5_1_4:2800942-2822352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.844482421875	2	510.777274	1019.53999	-0.22602	-0.00011545	3.2636	0.001667	3.0376	0.0015515	510.77788450896537	76.201	0.23392	75.947	75.826	76.06	-0.25418					7	5	2	0	0	0	0.024	1	9059	9059		65.803	0	1	66524			46647	15780	32352	32404	52052	52052					0.031005723004795982
LQLPQCGDP	9	Unmodified	_LQLPQCGDP_					0	0	0			REV__nc|ENSG00000174015|Q8NA61-2|CBY2	REV__nc|ENSG00000174015|Q8NA61-2|CBY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2915954589844	2	485.73676	969.458967	-0.22597	-0.00010976	0.3503	0.00017015	0.12432	6.0388E-05	485.73668810461555	82.713	0.51967	82.572	82.303	82.823	-0.14014					14	11	2	0	0	0	0.024457	1	9921	9921		21.96	0	1	61246	+		46648	26829	32353	32405	52053	52053					-0.02698451733931506
LQLPQFYDP	9	Unmodified	_LQLPQFYDP_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7669677734375	2	560.787307	1119.56006	-0.55071	-0.00030883	-0.59337	-0.00033275	-1.1441	-0.00064159	560.7867669509315	22.679	0.68885	22.493	22.142	22.831	-0.18539					35	14	4	0	0	0	0.024541	1	841	841		3.1592	0	1	127810			46649	664	32354	32406	52054	52054					0.005063232404154405
LQLQETEL	8	Unmodified	_LQLQETEL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2638854980469	2	487.263665	972.512776	-0.71248	-0.00034716	1.1854	0.00057762	0.47295	0.00023045	487.264162125792	66.695	1.0965	66.725	66.463	67.56	0.030106					56	26	3	0	0	0	0.53523	1	7873	7873		82.305	2.854	1	3508500			46650	5175	32355	32407	52055	52055					0.025420439694244124
LQLQLYRSD	9	Unmodified	_LQLQLYRSD_					0	0	0			REV__ENST00000551124.5_1_12:56418779-56429112:+|nuORF	REV__ENST00000551124.5_1_12:56418779-56429112:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3294067382812	2	568.308938	1134.60332	-0.63607	-0.00036148	4.146	0.0023562	3.5099	0.0019947	568.3110170104461	93.33	1.0227	93.33	92.622	93.645	0					55	23	3	0	0	0	0.024418	1	11832	11832		37.812	14.769	1	217820	+		46651	34925	32356	32408	52056	52056					0.04140513017705416
LQLQQLVL	8	Unmodified	_LQLQQLVL_					0	0	0		nc|ENSG00000028277|P09086-4|POU2F2;nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;ENSG00000028277|ENST00000692977|POU2F2;ENST00000530982.7_1_19:42603618-42636563:-|nuORF	nc|ENSG00000028277|P09086-4|POU2F2	nc|ENSG00000028277|P09086-4|POU2F2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.8027648925781	2	477.80276	953.590967	-0.4263	-0.00020369	0.87342	0.00041732	0.44713	0.00021364	477.8027477890576	33.586	0.69859	33.386	33.133	33.831	-0.20019					51	17	5	0	0	0	0.71717	1	2413	2413		65.897	0.094285	1	2417400			46652	1003	32357	32409	52057	52057					0.11231521345325746
LQLQQRHRQA	10	Unmodified	_LQLQQRHRQA_					0	0	0			REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	REV__nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.5791931152344	3	426.577693	1276.71125	-0.19234	-8.2048E-05	3.3652	0.0014355	3.1728	0.0013535	426.5790830656187	36.148	1.5952	35.943	35.544	37.14	-0.20518					119	42	4	0	0	0	1.0393	1	2852	2852		30.569	0	1	5660500	+		46653	37187	32358	32410	52058	52058					0.08396322391672584
LQLRMLILPN	10	Unmodified	_LQLRMLILPN_					0	0	0			REV__ENSG00000169071|ENST00000375708|ROR2	REV__ENSG00000169071|ENST00000375708|ROR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8722534179688	2	605.870651	1209.72675	-0.099911	-6.0533E-05	2.5327	0.0015345	2.4328	0.001474	605.8719802701046	98.576	1.0775	98.586	98.19	99.268	0.010231					67	24	4	0	0	0	1.1197	1	12533	12533		20.947	1.8434	1	1246300	+		46654	26315	32359	32411	52059	52059					0.1302747286451904
LQLRRCQP	8	Unmodified	_LQLRRCQP_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3030700683594	2	507.287285	1012.56002	-0.18024	-9.1432E-05	0.66014	0.00033488	0.4799	0.00024345	507.28721998194817	57.073	0.29966	56.908	56.745	57.045	-0.16431					10	8	2	0	0	0	0.027866	1	6355	6355		24.203	0	1	106740	+		46655	23311	32360	32412	52060	52060					0.05424044759433855
LQLRRRQLT	9	Unmodified	_LQLRRRQLT_					0	0	0		ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	591.8118286132812	2	592.372738	1182.73092	1.163	0.00068893	-3.1056	-0.0018397	-1.9426	-0.0011508	592.3704602421706	97.114	0.66472	97.114	96.749	97.414	-3.0518E-05					25	14	3	0	0	0	0.024405	1	12272	12272		35.618	1.4457	1	137250			46656	12743	32361	32413	52061	52061					0.1468669840239727
LQLRRRQLT	9	Unmodified	_LQLRRRQLT_					0	0	0		ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	592.372738	1182.73092	-1.5353	-0.00090948	-1.1062	-0.00065531	-2.6416	-0.0015648	592.3717134206352	97.122	0.66685	97.122	96.748	97.415	0	0.062375	0.00082918	NaN	35.618	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200400			46657	12743	32361	32413							0.1468669840239727
LQLRRRQLT	9	Unmodified	_LQLRRRQLT_					0	0	0		ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.372738	1182.73092	0.27129	0.00016071	-2.1488	-0.0012729	-1.8775	-0.0011122	592.3711829458688	97.154	0.80748	97.017	96.524	97.331	-0.13671	-0.0425	-0.00040598	NaN	35.618	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123610			46658	12743	32361	32413							0.1468669840239727
LQLRRRQLT	9	Unmodified	_LQLRRRQLT_					0	0	0		ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.372738	1182.73092	0.23674	0.00014024	-2.0597	-0.0012201	-1.823	-0.0010799	592.3712653512348	97.132	0.71253	97.008	96.75	97.463	-0.12368	-0.050878	-0.00030048	NaN	35.618	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177130			46659	12743	32361	32413							0.1468669840239727
LQLRRRQLT	9	Unmodified	_LQLRRRQLT_					0	0	0		ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	ENST00000359541.6_1_2:27566423-27579033:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	592.372738	1182.73092	-0.71959	-0.00042627	-1.0744	-0.00063642	-1.794	-0.0010627	592.3718264692214	97.228	0.62836	97.067	96.773	97.401	-0.16105	0.0080323	0.00086694	NaN	35.618	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195530			46660	12743	32361	32413							0.1468669840239727
LQLSALHLV	9	Unmodified	_LQLSALHLV_					0	0	0			REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.26318359375	2	497.30821	992.601866	-0.69487	-0.00034557	0.31204	0.00015518	-0.38283	-0.00019039	497.308178137986	44.716	1.0872	44.468	44.042	45.129	-0.24762					51	28	2	0	0	0	0.024294	1	4144	4144		45.952	3.5558	1	395380	+		46661	27685	32362	32414	52062	52062					0.10526923719612569
LQLSALHLV	9	Unmodified	_LQLSALHLV_					0	0	0			REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.30821	992.601866	-0.60716	-0.00030194	0.19867	9.8801E-05	-0.40849	-0.00020314	497.3081263815434	44.49	0.47774	44.49	44.247	44.725	0	-0.022449	-0.00010345	NaN	45.952	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420680	+		46662	27685	32362	32414							0.10526923719612569
LQLSALHLV	9	Unmodified	_LQLSALHLV_					0	0	0			REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.30821	992.601866	-1.1887	-0.00059115	0.64718	0.00032185	-0.54151	-0.0002693	497.3084049921948	44.654	0.50773	44.505	44.222	44.73	-0.1488	-0.0076859	0.00034264	NaN	45.952	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389650	+		46663	27685	32362	32414							0.10526923719612569
LQLSALHLV	9	Unmodified	_LQLSALHLV_					0	0	0			REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	REV__ENST00000507297.5_1_5:138861061-138861812:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.30821	992.601866	-0.18894	-9.3962E-05	-0.34045	-0.00016931	-0.52939	-0.00026327	497.307897531698	44.522	0.47691	44.559	44.34	44.817	0.0369	0.046435	-0.00063966	NaN	45.952	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384050	+		46664	27685	32362	32414							0.10526923719612569
LQLSPTASTI	10	Unmodified	_LQLSPTASTI_					0	0	0		SLC9A1|p.E284Nfs*13|1|0.36|ENSG00000090020|chr1:27109741-27109741|C/-|frameshift_variant;nc|ENSG00000090020|P19634-2|SLC9A1;ENSG00000090020|ENST00000263980|SLC9A1	SLC9A1|p.E284Nfs*13|1|0.36|ENSG00000090020|chr1:27109741-27109741|C/-|frameshift_variant	SLC9A1|p.E284Nfs*13|1|0.36|ENSG00000090020|chr1:27109741-27109741|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2706909179688	2	515.792589	1029.57063	-0.10008	-5.1618E-05	-0.2899	-0.00014953	-0.38998	-0.00020115	515.792201642751	51.062	0.47237	51.062	50.775	51.248	0					20	12	2	0	0	0	0.03519	1	5396	5396		56.434	0	1	413810			46665	1920	32363	32415	52063	52063					0.057023058948516336
LQLTPPPRRVH	11	Unmodified	_LQLTPPPRRVH_					0	0	0		ENST00000608694.1_1_7:129251138-129251447:-|nuORF	ENST00000608694.1_1_7:129251138-129251447:-|nuORF	ENST00000608694.1_1_7:129251138-129251447:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2469787597656	3	438.598206	1312.77279	0.077712	3.4084E-05	-0.72665	-0.00031871	-0.64894	-0.00028462	438.5978630880618	26.751	0.25153	26.751	26.531	26.783	0					6	5	2	0	0	0	0.024759	1	1386	1386		12.957	0	1	13808			46666	17597	32364	32416	52064	52064					0.12891254090914117
LQLVRNII	8	Unmodified	_LQLVRNII_					0	0	0		ENSG00000213995|ENST00000680254|NAXD;nc|ENSG00000213995|Q8IW45|NAXD;nc|ENSG00000213995|Q8IW45-2|NAXD	ENSG00000213995|ENST00000680254|NAXD	ENSG00000213995|ENST00000680254|NAXD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7821350097656	2	484.816202	967.617851	2.2637	0.0010975	-2.2082	-0.0010706	0.055581	2.6947E-05	484.8150131354243	24.316	0.39131	24.136	23.938	24.329	-0.18089					15	8	2	0	0	0	0.027866	1	1033	1033		38.806	0	1	177620			46667	10533	32365	32417	52065	52065					0.13274629956515582
LQLVRVNL	8	Unmodified	_LQLVRVNL_					0	0	0			REV__ENSG00000101004|ENST00000278886|NINL	REV__ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.25531005859375	2	477.808377	953.6022	0.31905	0.00015244	-0.13067	-6.2433E-05	0.18838	9.001E-05	477.80804693483975	41.496	0.78059	41.372	40.906	41.687	-0.12317					33	21	2	0	0	0	0.027866	1	3759	3759		47.916	12.297	1	185360	+		46668	21176	32366	32418	52066	52066					0.12354343439471904
LQLVVAIL	8	Unmodified	_LQLVVAIL_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.2513732910156	2	434.796946	867.57934	-0.10327	-4.4899E-05	-3.494	-0.0015192	-3.5973	-0.0015641	434.7978626585899	78.424	0.34232	78.169	77.955	78.297	-0.25471					9	7	2	0	0	0	0.027866	1	9322	9322		20.482	0	1	18134	+		46669	22342	32367	32419	52067	52067					0.14025324321983135
LQLWMSNK	8	Unmodified	_LQLWMSNK_					0	0	0		ENSG00000127743|ENST00000261796|IL17B	ENSG00000127743|ENST00000261796|IL17B	ENSG00000127743|ENST00000261796|IL17B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8441467285156	2	510.27077	1018.52699	-0.49844	-0.00025434	1.1637	0.0005938	0.66525	0.00033946	510.77121359605934	76.792	0.45158	76.564	76.239	76.691	-0.22843					16	10	2	0	0	0	0.027866	1	9399	9399		44.117	3.3386	1	113790			46670	4259	32368	32420	52068	52068					0.018464179167267503
LQLWPLFL	8	Unmodified	_LQLWPLFL_					0	0	0		nc|ENSG00000105711|Q07699-2|SCN1B	nc|ENSG00000105711|Q07699-2|SCN1B	nc|ENSG00000105711|Q07699-2|SCN1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2816772460938	2	515.310221	1028.60589	-1.1994	-0.00061807	-0.93085	-0.00047967	-2.1303	-0.0010977	515.30974232649	64.93	0.83755	64.93	64.422	65.26	0					55	22	3	0	0	0	0.027866	1	7709	7709		37.028	5.0736	1	689440			46671	18148	32369	32421	52069	52069					0.0927301321332834
LQMAGPQETV	10	Unmodified	_LQMAGPQETV_					0	0	0		ENSG00000168754|ENST00000490605|FAM178B	ENSG00000168754|ENST00000490605|FAM178B	ENSG00000168754|ENST00000490605|FAM178B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.78173828125	2	537.268424	1072.5223	-0.49918	-0.00026819	-1.3482	-0.00072437	-1.8474	-0.00099256	537.2672397694494	94.609	1.0168	94.609	94.205	95.222	0					46	23	3	0	0	0	0.03519	1	12088	12088		32.812	12.331	1	407250			46672	7856	32370	32422	52070	52070					-0.011065110167010062
LQMEAPHIIV	10	Unmodified	_LQMEAPHIIV_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000583899.5_1_17:7477924-7480015:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.7951049804688	2	575.818084	1149.62162	0.11966	6.89E-05	-3.2495	-0.0018711	-3.1298	-0.0018022	575.816193012787	63.67	0.32509	63.67	63.485	63.81	0					12	8	2	0	0	0	0.03519	1	7448	7448		39.253	5.0803	1	234190			46673	6905	32371	32423	52071	52071					0.05278931668044606
LQMEKKMNEP	10	Unmodified	_LQMEKKMNEP_					0	0	0		ENSG00000128710|ENST00000249501|HOXD10	ENSG00000128710|ENST00000249501|HOXD10	ENSG00000128710|ENST00000249501|HOXD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.5580139160156	3	416.542269	1246.60498	0.057552	2.3973E-05	-0.66287	-0.00027611	-0.60531	-0.00025214	416.5419127682487	24.424	0.61805	24.424	24.123	24.741	0					36	13	4	0	0	0	0.03519	1	1077	1077		35.178	0	1	253040			46674	4310	32372	32424	52072	52072					-0.008459372801780773
LQMGMLVF	8	Unmodified	_LQMGMLVF_					0	0	0		nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.2726135253906	2	469.745542	937.476531	-0.17476	-8.2092E-05	-1.1447	-0.00053772	-1.3195	-0.00061982	469.74523550769266	88.786	0.25304	88.649	88.482	88.735	-0.13744					9	5	2	0	0	0	0.027866	1	10804	10804		21.702	7.0382	1	78398			46675	2458	32373	32425	52073	52073					0.005291722673746335
LQMGMLVF	8	Unmodified	_LQMGMLVF_					0	0	0		nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	469.745542	937.476531	0.67883	0.00031888	-3.147	-0.0014783	-2.4681	-0.0011594	469.7448700044721	88.757	0.50825	88.757	88.47	88.978	0	0.04465	-0.00094073	NaN	21.702	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98106			46676	2458	32373	32425							0.005291722673746335
LQMGMLVF	8	Unmodified	_LQMGMLVF_					0	0	0		nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	469.745542	937.476531	1.0162	0.00047737	-2.2755	-0.0010689	-1.2593	-0.00059156	469.74448848771726	88.716	0.51259	88.731	88.537	89.05	0.015907	0.019071	-0.00012203	NaN	21.702	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204900			46677	2458	32373	32425							0.005291722673746335
LQMTKDRGLY	10	Unmodified	_LQMTKDRGLY_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.7993774414062	2	612.823898	1223.63324	-0.3233	-0.00019813	-3.0498	-0.001869	-3.3731	-0.0020671	612.8217242260705	71.19	0.75702	70.933	70.651	71.408	-0.25712					54	17	5	0	0	0	0.03519	1	8294	8294		39.253	7.723	1	1063000	+		46678	20551	32374	32426	52074	52074					0.03037128691403268
LQNAKQKL	8	Unmodified	_LQNAKQKL_					0	0	0		CON__Q6IFZ6	CON__Q6IFZ6	CON__Q6IFZ6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7774963378906	2	471.790184	941.565815	-0.14462	-6.8232E-05	1.8299	0.00086335	1.6853	0.00079511	471.790885510934	29.087	0.39378	29.09	28.883	29.276	0.0031357					13	9	2	0	0	0	0.027866	1	1731	1731		79.939	0	1	370470		+	46679	559	32375	32427	52075	52075					0.0926946654275298
LQNFMDLVL	9	Unmodified	_LQNFMDLVL_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7761840820312	2	546.791535	1091.56852	-0.79772	-0.00043619	-2.1563	-0.001179	-2.954	-0.0016152	546.7902311316818	52.033	0.70225	51.885	51.745	52.447	-0.14735					22	18	2	0	0	0	0.023007	1	5617	5617		76.774	0	1	154240	+		46680	22782	32376	32428	52076	52076					0.026395538853876133
LQNLKYLL	8	Unmodified	_LQNLKYLL_					0	0	0		MER58A_dup5652|chr7:93810599-93810805:-|1.7841562390201156|0.020634993768474|6.43|482.0|9|3|sense	MER58A_dup5652|chr7:93810599-93810805:-|1.7841562390201156|0.020634993768474|6.43|482.0|9|3|sense	MER58A_dup5652|chr7:93810599-93810805:-|1.7841562390201156|0.020634993768474|6.43|482.0|9|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2480773925781	2	502.810585	1003.60662	0.07015	3.5272E-05	-0.70225	-0.0003531	-0.6321	-0.00031783	502.80991155037276	61.471	0.60046	61.244	61.011	61.611	-0.22663					33	15	3	0	0	0	0.027866	1	7069	7069		25.45	0	1	930250			46681	17973	32377	32429	52077	52077					0.10495807862366746
LQNQDKKLL	9	Unmodified	_LQNQDKKLL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2896728515625	2	550.327131	1098.63971	-0.79603	-0.00043808	-0.035854	-1.9731E-05	-0.83188	-0.00045781	550.3269558598487	48.208	0.44527	48.275	48.007	48.452	0.066795					30	11	4	0	0	0	0.024397	1	4795	4795		47.657	12.039	1	1282100			46682	1110	32378	32430	52078	52078					0.09433389914420331
LQNRKSPE	8	Unmodified	_LQNRKSPE_					0	0	0		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3037109375	2	486.267073	970.519593	1.1059	0.00053776	-3.8797	-0.0018865	-2.7738	-0.0013488	486.2667027173168	20.11	0.43168	19.91	19.701	20.133	-0.2001					11	8	2	0	0	0	0.027866	1	523	523		68.787	37.257	1	17011			46683	9896	32379	32431	52079	52079					0.03315401640657001
LQNYVSFH	8	Unmodified	_LQNYVSFH_					0	0	0			REV__nc|ENSG00000121075|P57082|TBX4	REV__nc|ENSG00000121075|P57082|TBX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.7822570800781	2	504.250892	1006.48723	-0.92498	-0.00046642	-3.4121	-0.0017206	-4.3371	-0.002187	504.2490074847658	30.152	0.58212	30.226	29.879	30.461	0.074314					33	13	3	0	0	0	0.027866	1	1886	1886		31.955	12.595	1	570610	+		46684	22581	32380	32432	52080	52080					-0.015753857623280965
LQPDLCSLL	9	Unmodified	_LQPDLCSLL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1;ENST00000548132.1_1_12:120592933-120593466:-|nuORF	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7961730957031	2	501.270435	1000.52632	-0.24604	-0.00012333	3.217	0.0016126	2.971	0.0014893	501.27112217472217	66.747	0.21294	66.773	66.688	66.901	0.02684					6	4	2	0	0	0	0.024541	1	7871	7871		30.318	9.3708	1	123700			46685	1896	32381	32433	52081	52081					0.026075784770114296
LQPDVSTLTII	11	Unmodified	_LQPDVSTLTII_					0	0	0			REV__nc|ENSG00000254658|Q8NGG1|OR8J2	REV__nc|ENSG00000254658|Q8NGG1|OR8J2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.8861083984375	3	400.567578	1198.6809	0.44828	0.00017957	1.7734	0.00071037	2.2217	0.00088994	400.56811858270237	54.738	0.47132	54.531	54.395	54.866	-0.20613					18	12	2	0	0	0	0.024774	1	5853	5853		52.167	41.07	1	169570	+		46686	37172	32382	32434	52082	52082					0.08951106163249278
LQPEDPPGLA	10	Unmodified	_LQPEDPPGLA_					0	0	0		ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.78857421875	2	518.769114	1035.52368	-0.8843	-0.00045875	0.078583	4.0766E-05	-0.80572	-0.00041798	518.7694382228411	53.298	0.61942	53.15	52.873	53.493	-0.14723					31	16	3	0	0	0	0.03519	1	5783	5783		27.882	3.6795	1	1587200			46687	11946	32383	32435	52083	52083					0.007334463437246086
LQPEDPPGLA	10	Unmodified	_LQPEDPPGLA_					0	0	0		ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.769114	1035.52368	-0.60198	-0.00031229	-0.49075	-0.00025458	-1.0927	-0.00056687	518.7692013207487	53.245	0.53594	53.245	52.938	53.474	0	0.074887	-0.00022704	NaN	44.117	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1892000			46688	11946	32383	32435							0.007334463437246086
LQPEDPPGLA	10	Unmodified	_LQPEDPPGLA_					0	0	0		ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.769114	1035.52368	-0.65509	-0.00033984	-0.25978	-0.00013476	-0.91486	-0.0004746	518.7692531281442	53.056	0.5392	53.152	52.868	53.407	0.095669	-0.018112	1.2605E-05	NaN	44.117	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1504000			46689	11946	32383	32435							0.007334463437246086
LQPEDPPGLA	10	Unmodified	_LQPEDPPGLA_					0	0	0		ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.769114	1035.52368	-0.11284	-5.8536E-05	-0.10376	-5.3829E-05	-0.2166	-0.00011236	518.7690944135343	53.272	0.41589	53.145	52.913	53.329	-0.12705	-0.025295	0.00017448	NaN	44.117	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	980450			46690	11946	32383	32435							0.007334463437246086
LQPEDPPGLA	10	Unmodified	_LQPEDPPGLA_					0	0	0		ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.769114	1035.52368	0.20104	0.0001043	-1.5682	-0.00081351	-1.3671	-0.00070922	518.7681842251496	53.451	0.7122	53.192	52.961	53.674	-0.25838	0.021914	-0.0013449	NaN	44.117	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1105600			46691	11946	32383	32435							0.007334463437246086
LQPEDPPGLA	10	Unmodified	_LQPEDPPGLA_					0	0	0		ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.769114	1035.52368	-0.02713	-1.4074E-05	-1.3924	-0.00072235	-1.4196	-0.00073642	518.7681929633986	53.326	0.78951	53.137	52.868	53.657	-0.18981	-0.033598	-0.0011626	NaN	44.117	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1032900			46692	11946	32383	32435							0.007334463437246086
LQPEEPPEQ	9	Unmodified	_LQPEEPPEQ_					0	0	0			REV__ENST00000494501.5_1_2:71828556-71838728:+|nuORF	REV__ENST00000494501.5_1_2:71828556-71838728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3311157226562	2	533.756204	1065.49785	-1.5724	-0.00083929	-3.1417	-0.0016769	-4.7141	-0.0025162	533.7551682250635	44.546	0.5387	44.398	44.159	44.698	-0.14766					24	15	2	0	0	0	0.024495	1	4208	4208		34.173	0	1	92190	+		46693	33785	32384	32436	52084	52084					-0.032274478985755195
LQPGAHEL	8	Unmodified	_LQPGAHEL_					0	0	0			REV__ENST00000495607.5_1_22:50750570-50752368:-|nuORF	REV__ENST00000495607.5_1_22:50750570-50752368:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.73199462890625	2	432.732335	863.450116	0.26426	0.00011436	-1.3347	-0.00057759	-1.0705	-0.00046323	432.731609240746	98.399	2.1324	98.399	97.814	99.946	0					148	49	4	0	0	0	0.97924	1	12544	12544		40.573	7.057	1	3598600	+		46694	28682	32385	32437	52085	52085					0.01292942691884491
LQPGPIMVTK	10	Unmodified	_LQPGPIMVTK_					0	0	0			REV__nc|ENSG00000278845|Q9BRJ2|MRPL45	REV__nc|ENSG00000278845|Q9BRJ2|MRPL45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2824096679688	2	542.315177	1082.6158	-0.4128	-0.00022387	-3.6821	-0.0019969	-4.0949	-0.0022207	542.3130241630273	52.657	0.43346	52.398	52.21	52.644	-0.25838					19	10	2	0	0	0	0.03519	1	5447	5447		24.519	0	1	271940	+		46695	29222	32386	32438	52086	52086					0.07779833156382665
LQPHRALKP	9	Unmodified	_LQPHRALKP_					0	0	0			REV__ENST00000535095.5_1_12:95867705-95867888:+|nuORF	REV__ENST00000535095.5_1_12:95867705-95867888:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.3226928710938	2	530.324725	1058.6349	-1.4305	-0.00075864	2.1988	0.0011661	0.76825	0.00040742	530.325745441461	106.17	0.3558	106.04	105.85	106.21	-0.1328					19	13	2	0	0	0	0.80658	1	13214	13214		38.806	1.647	1	141770	+		46696	34663	32387	32439	52087	52087					0.10792550562314318
LQPLKNEAF	9	Unmodified	_LQPLKNEAF_					0	0	0		ENST00000446526.7_1_17:74307081-74307147:-|nuORF	ENST00000446526.7_1_17:74307081-74307147:-|nuORF	ENST00000446526.7_1_17:74307081-74307147:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.3165283203125	2	530.295299	1058.57605	-0.23869	-0.00012658	-3.3028	-0.0017515	-3.5415	-0.001878	530.2936176550061	36.249	0.36031	36.032	35.845	36.205	-0.21661					12	9	2	0	0	0	0.024457	1	2827	2827		29.15	12.676	1	156950			46697	14456	32388	32440	52088	52088					0.04910029477309763
LQPNYWPG	8	Unmodified	_LQPNYWPG_					0	0	0		nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;ENSG00000139155|ENST00000266509|SLCO1C1	nc|ENSG00000139155|Q9NYB5-2|SLCO1C1	nc|ENSG00000139155|Q9NYB5-2|SLCO1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2796325683594	2	487.74016	973.465767	0.079731	3.8888E-05	0.73086	0.00035647	0.81059	0.00039536	487.74003393482724	77.749	0.7692	77.587	77.268	78.037	-0.16196					29	17	2	0	0	0	0.027866	1	9212	9212		31.955	15.482	1	228870			46698	5304	32389	32441	52089	52089					-0.02202770791052444
LQPPALLK	8	Unmodified	_LQPPALLK_					0	0	0		ENST00000374796.6_2_20:33303163-33315116:-|nuORF	ENST00000374796.6_2_20:33303163-33315116:-|nuORF	ENST00000374796.6_2_20:33303163-33315116:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7765808105469	2	440.286746	878.558939	-0.05495	-2.4194E-05	1.2849	0.00056574	1.23	0.00054155	440.2867767978481	22.006	0.4332	21.804	21.566	21.999	-0.20199					18	8	3	0	0	0	0.027866	1	720	720		12.207	0	1	36672			46699	13134	32390	32442	52090	52090					0.1148015366219397
LQPPKKIT	8	Unmodified	_LQPPKKIT_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7966613769531	2	462.797478	923.580402	0.22946	0.00010619	-0.80924	-0.00037452	-0.57979	-0.00026832	462.79692503834076	32.172	1.1628	32.235	31.839	33.002	0.062885					83	29	4	0	0	0	0.74904	1	2186	2186		63.306	3.188	1	2169300	+		46700	36815	32391	32443	52091	52091					0.11555538690890899
LQPPLKGVV	9	Unmodified	_LQPPLKGVV_					0	0	0		ENSG00000166183|ENST00000551177|ASPG;nc|ENSG00000166183|Q86U10-3|ASPG	ENSG00000166183|ENST00000551177|ASPG	ENSG00000166183|ENST00000551177|ASPG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7928161621094	2	475.805303	949.596052	0.20133	9.5795E-05	2.6321	0.0012524	2.8334	0.0013482	475.80692974913507	49.988	0.35918	50.069	49.884	50.243	0.08099					16	10	2	0	0	0	0.024323	1	5108	5108		44.117	22.157	1	292820			46701	7518	32392	32444	52092	52092					0.11923825207952632
LQPQPAAH	8	Unmodified	_LQPQPAAH_					0	0	0		ENST00000589653.5_2_19:38308186-38310208:+|nuORF	ENST00000589653.5_2_19:38308186-38310208:+|nuORF	ENST00000589653.5_2_19:38308186-38310208:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	431.8520202636719	2	431.232502	860.450451	-0.64301	-0.00027729	0.74549	0.00032148	0.10247	4.419E-05	431.2326676913707	45.778	0.37522	45.626	45.512	45.888	-0.15156					14	10	2	0	0	0	0.027866	1	4472	4472		20.482	13.288	1	307010			46702	17312	32393	32445	52093	52093					0.014643624117411491
LQPQPSRPPR	10	Unmodified	_LQPQPSRPPR_					0	0	0		ENST00000248564.5_1_7:93551035-93551218:+|nuORF	ENST00000248564.5_1_7:93551035-93551218:+|nuORF	ENST00000248564.5_1_7:93551035-93551218:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.3336791992188	2	588.335821	1174.65709	-0.43609	-0.00025657	-0.233	-0.00013708	-0.66909	-0.00039365	588.3356239375158	106.88	0.67963	106.75	106.39	107.07	-0.1238					53	22	4	0	0	0	1.1265	1	13289	13289		24.519	2.5593	1	450350			46703	11335	32394	32446	52094	52094					0.07674730240069039
LQPQSRHPSPT	11	Unmodified	_LQPQSRHPSPT_					0	0	0		ENST00000378313.6_2_19:41247612-41247816:-|nuORF	ENST00000378313.6_2_19:41247612-41247816:-|nuORF	ENST00000378313.6_2_19:41247612-41247816:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.5725402832031	3	416.554554	1246.64183	-0.25389	-0.00010576	-2.3869	-0.00099425	-2.6407	-0.0011	416.5543771104297	41.595	0.14423	41.459	41.334	41.478	-0.13553					5	3	2	0	0	0	0.024741	1	3677	3677		28.384	4.1078	1	72463			46704	13235	32395	32447	52095	52095					0.028378186522104443
LQPSFEALK	9	Unmodified	_LQPSFEALK_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3055419921875	2	516.78985	1031.56515	-0.45932	-0.00023737	0.72435	0.00037434	0.26504	0.00013697	516.7901600194641	60.66	0.56147	60.454	60.172	60.734	-0.20599					28	13	3	0	0	0	0.024367	1	6715	6715		52.937	8.5595	1	150890			46705	4256;18250;18249	32396	32448	52096	52096					0.050626271030296266
LQPSMNMKY	9	2 Oxidation (M)	_LQPSM(Oxidation (M))NM(Oxidation (M))KY_		LQPSM(1)NM(1)KY		LQPSM(82)NM(82)KY	0	0	2		ENST00000517942.1_1_8:33229659-33246696:-|nuORF;ENST00000519440.5_1_8:33229659-33235056:-|nuORF	ENST00000517942.1_1_8:33229659-33246696:-|nuORF	ENST00000517942.1_1_8:33229659-33246696:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2643432617188	2	572.262284	1142.51002	0.45178	0.00025853	2.2409	0.0012824	2.6927	0.0015409	572.2634898521669	76.915	0.74406	76.664	76.228	76.972	-0.25163					40	17	3	0	0	0	0.2508	1	9141	9141		82.241	10.363	1	615700			46706	15920	32397	32449	52097	52097		527;528			-0.05553870751373324
LQPTNANEK	9	Unmodified	_LQPTNANEK_					0	0	0		ENSG00000147570|ENST00000276570|DNAJC5B	ENSG00000147570|ENST00000276570|DNAJC5B	ENSG00000147570|ENST00000276570|DNAJC5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7640686035156	2	507.764363	1013.51417	-0.43397	-0.00022036	-0.34241	-0.00017386	-0.77638	-0.00039422	507.76426259909874	22.322	1.2232	22.246	21.698	22.921	-0.075296					49	25	3	0	0	0	0.43973	1	757	757		63.306	0	1	6188800			46707	5977	32398	32450	52098	52098					0.007956780581821477
LQPYTNRR	8	Unmodified	_LQPYTNRR_					0	0	0		MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant;nc|ENSG00000141644|Q9UIS9-6|MBD1;nc|ENSG00000141644|Q9UIS9-5|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1	MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant	MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	524.28834	1046.56213	-0.59781	-0.00031342	0.0086703	4.5457E-06	-0.58914	-0.00030888	524.2883165896219	28.42	0.92009	28.251	27.807	28.727	-0.16897					56	21	3	0	0	0	1.0338	1	1665	1665		31.955	1.4512	1	3614000			46708	17955	32399	32451	52099	52099					0.04070796768883156
LQQAFSEL	8	Unmodified	_LQQAFSEL_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.26885986328125	2	468.245275	934.475997	-0.39199	-0.00018355	1.1594	0.00054288	0.7674	0.00035933	468.24571196614266	60.759	0.52159	60.546	60.273	60.795	-0.2134					22	13	3	0	0	0	0.027866	1	6956	6956		31.955	0	1	277510			46709	18053	32400	32452	52100	52100					0.006137921435083626
LQQALELDTL	10	Unmodified	_LQQALELDTL_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.7277221679688	2	572.316428	1142.6183	-1.1424	-0.00065379	1.885	0.0010788	0.74266	0.00042504	572.3174125340012	50.717	1.0945	50.798	50.41	51.505	0.080994					95	30	4	0	0	0	0.03519	1	5370	5370		40.058	0	1	1655600	+		46710	24243	32401	32453	52101	52101					0.052699600950290915
LQQALVLPD	9	Unmodified	_LQQALVLPD_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7883605957031	2	498.78985	995.565146	-0.5002	-0.00024949	-2.8547	-0.0014239	-3.3549	-0.0016734	498.7884542741766	21.56	1.003	21.56	21.195	22.198	0					59	20	4	0	0	0	0.43973	1	673	673		63.306	11.971	1	2404800	+		46711	28517	32402	32454	52102	52102					0.06718627103020935
LQQAPELPG	9	Unmodified	_LQQAPELPG_					0	0	0		ENST00000325722.7_1_1:35972522-35972627:-|nuORF	ENST00000325722.7_1_1:35972522-35972627:-|nuORF	ENST00000325722.7_1_1:35972522-35972627:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7579345703125	2	476.758549	951.502546	-0.30085	-0.00014343	-0.97006	-0.00046248	-1.2709	-0.00060592	476.75800283223526	103.64	1.2436	103.51	102.91	104.16	-0.12783					67	32	3	0	0	0	0.92825	1	12914	12914		30.504	0	1	2423600			46712	12275	32403	32455	52103	52103					0.0248548103485291
LQQARQYNP	9	Unmodified	_LQQARQYNP_					0	0	0			REV__ENSG00000100065|ENST00000251973|CARD10	REV__ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8191528320312	2	559.291079	1116.56761	-1.7688	-0.00098926	1.6638	0.00093053	-0.10502	-5.8736E-05	559.2917911586355	60.488	0.25488	60.567	60.392	60.647	0.078884					11	6	2	0	0	0	0.024354	1	6851	6851		38.806	1.647	1	122400	+		46713	21042	32404	32456	52104	52104					0.013984755606998078
LQQAVQVIL	9	Unmodified	_LQQAVQVIL_					0	0	0		nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.31292724609375	2	506.313492	1010.61243	1.0345	0.00052378	-3.2625	-0.0016518	-2.228	-0.0011281	506.31263149461626	64.121	1.1814	64.167	63.794	64.975	0.045502					77	31	4	0	0	0	0.31247	1	7454	7454		73.975	2.5968	1	3405900			46714	18074	32405	32457	52105	52105					0.1075490637402936
LQQAWKIATGT	11	Unmodified	_LQQAWKIATGT_					0	0	0			REV__nc|ENSG00000175066|Q6ZS86-3|GK5	REV__nc|ENSG00000175066|Q6ZS86-3|GK5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.8363037109375	2	608.837862	1215.66117	-1.5508	-0.00094421	-0.27679	-0.00016852	-1.8276	-0.0011127	608.8375823790956	109.85	0.61025	109.72	109.5	110.11	-0.13983					81	26	5	0	0	0	1.0521	1	13499	13499		24.519	0.99649	1	5424900	+		46715	26914	32406	32458	52106	52106					0.06196774943123273
LQQDPLVDI	9	Unmodified	_LQQDPLVDI_					0	0	0			REV__ENST00000538862.6_1_12:6960483-6960693:-|nuORF	REV__ENST00000538862.6_1_12:6960483-6960693:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7836303710938	2	520.784764	1039.55498	-0.065214	-3.3962E-05	-0.92283	-0.00048059	-0.98804	-0.00051456	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	0.6504	1	13726	13726		49.442	3.4693	1	7303900	+		46716	34724	32407	32459	52107	52107					0.036780193777985914
LQQDPLVDI	9	Unmodified	_LQQDPLVDI_					0	0	0			REV__ENST00000538862.6_1_12:6960483-6960693:-|nuORF	REV__ENST00000538862.6_1_12:6960483-6960693:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.784764	1039.55498	-0.80723	-0.00042039	-0.90591	-0.00047178	-1.7131	-0.00089218	520.7842789345635	106.39	0.25771	106.25	106.12	106.38	-0.1328	-0.16913	0.0001716	NaN	49.442	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54316	+		46717	34724	32407	32459							0.036780193777985914
LQQDPLVDI	9	Unmodified	_LQQDPLVDI_					0	0	0			REV__ENST00000538862.6_1_12:6960483-6960693:-|nuORF	REV__ENST00000538862.6_1_12:6960483-6960693:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.784764	1039.55498	0.66275	0.00034515	-2.2588	-0.0011763	-1.5961	-0.0008312	520.7837607905132	106.41	0.36649	106.25	106	106.37	-0.16132	-0.17029	-0.0012375	NaN	49.442	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41239	+		46718	34724	32407	32459							0.036780193777985914
LQQGVPHGY	9	Unmodified	_LQQGVPHGY_					0	0	0		nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2;ENST00000281620.10_1_13:26279420-26594120:+|nuORF	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3236389160156	2	499.756341	997.498129	1.7137	0.00085642	0.74291	0.00037127	2.4566	0.0012277	500.25784354344324	63.963	0.32314	64.009	63.83	64.153	0.045506					10	8	2	0	0	0	0.024466	1	7409	7409		12.207	0	1	74865			46719	4663	32408	32460	52108	52108					-0.0007198338805665117
LQQIKFRT	8	Unmodified	_LQQIKFRT_					0	0	0			REV__ENSG00000178974|ENST00000313833|FBXO34	REV__ENSG00000178974|ENST00000313833|FBXO34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8182373046875	2	517.311284	1032.60801	-1.1581	-0.0005991	-3.0314	-0.0015682	-4.1895	-0.0021673	517.3094613725153	21.566	0.19379	21.353	21.216	21.41	-0.2128					5	3	2	0	0	0	0.027866	1	661	661		30.504	0	1	9307.9	+		46720	27221	32409	32461	52109	52109					0.09301441951129163
LQQISVSL	8	Unmodified	_LQQISVSL_					0	0	0		ENST00000607802.1_1_20:61640736-61711710:+|nuORF	ENST00000607802.1_1_20:61640736-61711710:+|nuORF	ENST00000607802.1_1_20:61640736-61711710:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.26373291015625	2	444.263468	886.512382	0.32383	0.00014387	-0.16132	-7.1669E-05	0.16251	7.2197E-05	444.2632779557512	72.791	0.95058	72.801	72.489	73.44	0.0096512					44	23	3	0	0	0	0.35998	1	8801	8801		102.77	0	1	1075000			46721	17582	32410	32462	52110	52110					0.06458669040239329
LQQIYDKL	8	Unmodified	_LQQIYDKL_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.78900146484375	2	510.78985	1019.56515	-0.83413	-0.00042607	0.35494	0.0001813	-0.47919	-0.00024476	510.79000259281304	82.142	1.8529	82.001	81.443	83.296	-0.14014					121	42	4	0	0	0	0.78609	1	9982	9982		60.294	5.5176	1	5094800	+		46722	26563	32411	32463	52111	52111					0.056146271030456774
LQQKKQLI	8	Unmodified	_LQQKKQLI_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.79205322265625	2	499.821484	997.628415	-0.69016	-0.00034496	-0.25701	-0.00012846	-0.94716	-0.00047341	499.8211859208708	29.555	0.54693	29.382	29.156	29.703	-0.17258					32	12	3	0	0	0	0.027866	1	1807	1807		31.955	0	1	610270	+		46723	23667	32412	32464	52112	52112					0.1295061261095043
LQQLLTDL	8	Unmodified	_LQQLLTDL_					0	0	0		ENST00000559444.1_1_15:49090143-49103222:-|nuORF;nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152;nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152	ENST00000559444.1_1_15:49090143-49103222:-|nuORF	ENST00000559444.1_1_15:49090143-49103222:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7898864746094	2	472.276575	942.538597	0.065603	3.0983E-05	2.421	0.0011434	2.4866	0.0011743	472.27796101325276	47.829	0.28526	47.676	47.606	47.891	-0.153					13	8	2	0	0	0	0.027866	1	4832	4832		25.45	0	1	242750			46724	2537	32413	32465	52113	52113					0.06502938211713172
LQQLPALIADL	11	Unmodified	_LQQLPALIADL_					0	0	0		ENST00000513680.5_1_6:15524894-15660633:-|nuORF;nc|ENSG00000047579|Q96EV8-3|DTNBP1;ENST00000506844.1_1_6:15524658-15660633:-|nuORF;nc|ENSG00000047579|Q96EV8-2|DTNBP1;ENST00000510395.5_1_6:15523208-15651611:-|nuORF;ENSG00000047579|ENST00000344537|DTNBP1	ENST00000513680.5_1_6:15524894-15660633:-|nuORF	ENST00000513680.5_1_6:15524894-15660633:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8574829101562	2	597.858264	1193.70197	-0.78863	-0.00047149	-2.1219	-0.0012686	-2.9105	-0.0017401	598.358780099829	90.777	2.8733	90.76	88.87	91.743	-0.016716					174	68	3	0	0	0	0.95882	1	11496	11496		45.972	5.1941	1	2218500			46725	1104	32414	32466	52114	52114					0.11287116262769814
LQQLRKKQNL	10	Unmodified	_LQQLRKKQNL_					0	0	0			REV__nc|ENSG00000168556|Q9H160-2|ING2	REV__nc|ENSG00000168556|Q9H160-2|ING2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	635.3834228515625	2	634.893503	1267.77245	-0.77889	-0.00049451	-1.0276	-0.0006524	-1.8065	-0.0011469	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	1.0992	1	13051	13051		32.812	6.1195	1	1853200	+		46726	26275	32415	32467	52115	52115					0.14927834371087556
LQQMFVRAV	9	Unmodified	_LQQMFVRAV_					0	0	0			REV__nc|ENSG00000140474|Q6PHR2-3|ULK3	REV__nc|ENSG00000140474|Q6PHR2-3|ULK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7876586914062	2	546.305144	1090.59573	-0.66818	-0.00036503	3.9666	0.002167	3.2984	0.0018019	546.307766247708	29.974	0.59645	29.73	29.482	30.079	-0.24415					26	13	3	0	0	0	0.024535	1	1872	1872		0.99688	0	1	308640	+		46727	24022	32416	32468	52116	52116					0.05406082216450159
LQQNIALP	8	Unmodified	_LQQNIALP_					0	0	0		ENSG00000042980|ENST00000265769|ADAM28;nc|ENSG00000042980|Q9UKQ2-2|ADAM28	ENSG00000042980|ENST00000265769|ADAM28	ENSG00000042980|ENST00000265769|ADAM28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.235595703125	2	448.763635	895.512717	-0.8775	-0.00039379	0.97603	0.00043801	0.098531	4.4217E-05	448.7639327604837	37.581	0.84029	37.372	36.961	37.801	-0.2092					50	21	3	0	0	0	0.027866	1	3082	3082		26.796	0	1	1213800			46728	1084	32417	32469	52117	52117					0.060780887600685674
LQQPGQLVD	9	Unmodified	_LQQPGQLVD_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2875061035156	2	499.269281	996.52401	0.72302	0.00036098	0.077613	3.875E-05	0.80063	0.00039973	499.2671200490082	55.737	0.3564	55.737	55.536	55.892	0					13	9	2	0	0	0	0.023417	1	6151	6151		58.782	0	1	165120			46729	8549	32418	32470	52118	52118					0.02560866063561207
LQQPGQLVD	9	Unmodified	_LQQPGQLVD_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2875061035156	2	499.269281	996.52401	1.0057	0.00050214	3.1762	0.0015858	4.182	0.0020879	499.2706106634168	55.404	0.42769	55.404	55.182	55.61	0					19	11	2	0	0	0	0.023417	1	6151	6151		58.782	0	1	362900			46730	8549	32418	32470	52119	52119					0.02560866063561207
LQQPPRTQ	8	Unmodified	_LQQPPRTQ_					0	0	0		ENST00000415383.5_1_10:99225832-99226263:-|nuORF;ENST00000434538.5_1_10:99225832-99226263:-|nuORF	ENST00000415383.5_1_10:99225832-99226263:-|nuORF	ENST00000415383.5_1_10:99225832-99226263:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.2745056152344	2	484.269616	966.524678	0.11071	5.3612E-05	2.0196	0.00097804	2.1303	0.0010317	484.27013433440084	34.51	0.39278	34.286	34.106	34.499	-0.22412					22	9	3	0	0	0	0.027866	1	2544	2544		30.504	1.3541	1	451520			46731	13875	32419	32471	52120	52120					0.04007705503283887
LQQPSALMLL	10	Unmodified	_LQQPSALMLL_					0	0	0		ENST00000487429.1_1_6:43025779-43026944:-|nuORF;ENST00000491898.5_1_6:43023672-43027146:-|nuORF;ENSG00000112651|ENST00000388752|MRPL2	ENST00000487429.1_1_6:43025779-43026944:-|nuORF	ENST00000487429.1_1_6:43025779-43026944:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.3180541992188	2	557.32046	1112.62637	0.12303	6.8568E-05	-3.7564	-0.0020935	-3.6333	-0.0020249	557.318306226657	69.604	0.84265	69.604	69.238	70.081	0					72	21	5	0	0	0	1.089	1	8443	8443		34.173	6.2903	1	9046200			46732	3226	32420	32472	52121	52121					0.07455815810817512
LQQQQAVL	8	Unmodified	_LQQQQAVL_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5;ENSG00000258472|ENST00000531839|unknown	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.9007568359375	2	464.266542	926.51853	0.1146	5.3204E-05	1.6959	0.00078736	1.8105	0.00084057	464.2669985768917	20.51	0.29667	20.342	20.098	20.395	-0.16774					8	5	2	0	0	0	0.027866	1	533	533		26.796	16.531	1	13004			46733	1583	32421	32473	52122	52122					0.052331872717559236
LQQQVQPEP	9	Unmodified	_LQQQVQPEP_					0	0	0			REV__ENSG00000260734|ENST00000561754|TLE7	REV__ENSG00000260734|ENST00000561754|TLE7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.761474609375	2	533.780013	1065.54547	-0.6427	-0.00034306	0.74636	0.00039839	0.10366	5.5331E-05	533.7802102682472	29.207	0.38685	29.058	28.784	29.171	-0.14952					12	8	2	0	0	0	0.024381	1	1721	1721		37.159	2.9866	1	60070	+		46734	29108	32422	32474	52123	52123					0.015322510922715082
LQQREEIGKGK	11	Unmodified	_LQQREEIGKGK_					0	0	0			REV__ENSG00000143614|ENST00000368655|GATAD2B	REV__ENSG00000143614|ENST00000368655|GATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.2764892578125	3	429.245609	1284.715	0.058341	2.5043E-05	-0.20663	-8.8696E-05	-0.14829	-6.3654E-05	429.24556613828554	50.027	0.32255	49.876	49.708	50.031	-0.1512					15	8	2	0	0	0	0.024809	1	5153	5153		8.4073	0.37291	1	164610	+		46735	24265	32423	32475	52124	52124					0.08402947374838732
LQQRLLPK	8	Unmodified	_LQQRLLPK_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.3212890625	2	498.321651	994.62875	-0.4295	-0.00021403	0.22913	0.00011418	-0.20037	-9.9849E-05	498.3216064475399	48.983	1.5565	48.831	47.924	49.481	-0.15277					120	43	4	0	0	0	0.59392	1	5009	5009		76.847	7.219	1	2650500			46736	4358	32424	32476	52125	52125					0.1312203233079572
LQQRLLPK	8	Unmodified	_LQQRLLPK_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3212890625	2	498.321651	994.62875	-0.42156	-0.00021007	0.20662	0.00010296	-0.21495	-0.00010711	498.3215976170792	48.702	1.5512	48.769	47.87	49.421	0.066795					117	42	4	0	0	0	0.6248	1	4916	4916		73.975	5.1879	1	2777600			46737	4358	32424	32476	52126	52126					0.1312203233079572
LQQRLLVR	8	Unmodified	_LQQRLLVR_					0	0	0			REV__ENSG00000068323|ENST00000315869|TFE3	REV__ENSG00000068323|ENST00000315869|TFE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3085327148438	2	513.33255	1024.65055	-1.1692	-0.00060021	0.0076708	3.9377E-06	-1.1616	-0.00059628	513.332641053453	46.307	0.63167	46.155	45.92	46.551	-0.15156					38	17	4	0	0	0	0.027866	1	4547	4547		19.36	5.5846	1	564600	+		46738	20374	32425	32477	52127	52127					0.13920837079353987
LQQRRLKH	8	Unmodified	_LQQRRLKH_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7924194335938	2	539.833249	1077.65194	0.32671	0.00017637	-2.9247	-0.0015788	-2.598	-0.0014025	540.3322697216024	78.32	0.41158	78.128	77.764	78.176	-0.19211					11	9	2	0	0	0	0.027866	1	9657	9657		28.254	0	1	266850			46739	13153;10050	32426	32478	52128	52128					0.11622471168129778
LQQTQAVPL	9	Unmodified	_LQQTQAVPL_					0	0	0		nc|ENSG00000104044|Q04671-3|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;ENSG00000104044|ENST00000354638|OCA2	nc|ENSG00000104044|Q04671-3|OCA2	nc|ENSG00000104044|Q04671-3|OCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.28753662109375	2	499.287474	996.560395	-1.1282	-0.00056331	-0.51108	-0.00025517	-1.6393	-0.00081848	499.2872225655875	49.019	1.0675	49.093	48.736	49.804	0.074192					68	28	5	0	0	0	0.48817	1	4970	4970		60.118	0	1	2136800			46740	2539	32427	32479	52129	52129					0.061977429602734446
LQQTTQLIK	9	Unmodified	_LQQTTQLIK_					0	0	0		nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.8222045898438	2	536.821681	1071.62881	-0.82367	-0.00044216	-0.055845	-2.9979E-05	-0.87951	-0.00047214	536.8215248455795	45.854	0.72058	45.898	45.647	46.368	0.043877					45	20	3	0	0	0	0.15366	1	4436	4436		98.629	0	1	1813900			46741	1822	32428	32480	52130	52130					0.09585987540117458
LQQTTQLIK	9	Unmodified	_LQQTTQLIK_					0	0	0		nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.821681	1071.62881	-0.53524	-0.00028733	-0.42449	-0.00022788	-0.95973	-0.0005152	536.8212463439778	45.911	0.58995	45.911	45.646	46.236	0	0.039714	-0.00034721	NaN	98.629	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1763000			46742	1822	32428	32480							0.09585987540117458
LQQTTQLIK	9	Unmodified	_LQQTTQLIK_					0	0	0		nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENSG00000086712|ENST00000380122|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	nc|ENSG00000086712|Q9NUQ3-2|TXLNG	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.821681	1071.62881	-1.3273	-0.00071252	0.3432	0.00018424	-0.9841	-0.00052829	536.8217511557933	45.957	0.93732	45.805	45.578	46.515	-0.15156	-0.066348	0.00047702	NaN	98.629	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1777500			46743	1822	32428	32480							0.09585987540117458
LQQTVAAALN	10	Unmodified	_LQQTVAAALN_					0	0	0			REV__ENSG00000114771|ENST00000232892|AADAC	REV__ENSG00000114771|ENST00000232892|AADAC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7898559570312	2	514.790381	1027.56621	-0.048853	-2.5149E-05	-0.21145	-0.00010885	-0.2603	-0.000134	514.7902006253424	41.455	1.2439	41.332	41.016	42.26	-0.12317					92	35	5	0	0	0	0.75651	1	3743	3743		63.534	4.7519	1	6259800	+		46744	22143	32429	32481	52131	52131					0.05352841471949432
LQQTWFTF	8	Unmodified	_LQQTWFTF_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7822265625	2	535.768917	1069.52328	-1.5888	-0.00085121	1.6432	0.00088038	0.054445	2.917E-05	535.7696726206697	40.903	0.93497	40.672	40.378	41.313	-0.23029					40	24	2	0	0	0	0.027866	1	3630	3630		17.365	0.89182	1	217920			46745	5185	32430	32482	52132	52132					-0.008699285854845584
LQQWNNIL	8	Unmodified	_LQQWNNIL_					0	0	0			REV__ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	REV__ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7509765625	2	514.779816	1027.54508	-0.94074	-0.00048428	4.198	0.002161	3.2572	0.0016768	514.7819331107082	79.873	1.2552	79.894	79.478	80.733	0.021439					46	29	2	0	0	0	0.027866	1	9860	9860		38.806	0	1	151730	+		46746	27891	32431	32483	52133	52133					0.03240876163090434
LQRADSAL	8	Unmodified	_LQRADSAL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.24310302734375	2	437.243067	872.47158	-0.36289	-0.00015867	0.42325	0.00018507	0.06036	2.6392E-05	437.2431638554501	30.269	0.86625	30.277	30.002	30.868	0.0086689					34	20	2	0	0	0	0.44658	1	1919	1919		90.777	0	1	968180			46747	4190	32432	32484	52134	52134					0.030243277205954655
LQRADSAL	8	Unmodified	_LQRADSAL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.243067	872.47158	-0.93401	-0.00040839	0.7694	0.00033641	-0.16461	-7.1977E-05	437.2433865659545	30.332	0.78079	30.332	30.057	30.838	0	0.10846	0.00012658	NaN	90.777	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902530			46748	4190	32432	32484							0.030243277205954655
LQRADSAL	8	Unmodified	_LQRADSAL_					0	0	0		ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	437.243067	872.47158	-0.73566	-0.00032166	0.73511	0.00032142	-0.00054512	-2.3835E-07	437.24331727151633	29.983	0.86871	30.061	29.802	30.671	0.078344	-0.16247	9.6593E-05	NaN	90.777	66	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899970			46749	4190	32432	32484							0.030243277205954655
LQRAKPSN	8	Unmodified	_LQRAKPSN_					0	0	0		PHF13|p.G138Afs*3|1|0.24|ENSG00000116273|chr1:6620068-6620068|G/-|frameshift_variant;ENSG00000116273|ENST00000377648|PHF13	PHF13|p.G138Afs*3|1|0.24|ENSG00000116273|chr1:6620068-6620068|G/-|frameshift_variant	PHF13|p.G138Afs*3|1|0.24|ENSG00000116273|chr1:6620068-6620068|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2637939453125	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0284	1	9945	9945		32.812	2.3088	1	3503800			46750	3542	32433	32485	52135	52135					0.054357228488470355
LQRCKLAGT	9	Unmodified	_LQRCKLAGT_					0	0	0			REV__ENST00000329321.3_3_2:133174201-133174462:+|nuORF	REV__ENST00000329321.3_3_2:133174201-133174462:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2854309082031	2	495.281669	988.548785	0.55126	0.00027303	1.6867	0.00083542	2.238	0.0011084	495.2821056892862	51.48	0.87593	51.48	51.03	51.906	0					43	24	3	0	0	0	0.024436	1	5458	5458		16.473	0	1	193290	+		46751	30445	32434	32486	52136	52136					0.05405222665274323
LQREGVPD	8	Unmodified	_LQREGVPD_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.766845703125	2	457.240524	912.466495	-0.26837	-0.00012271	-0.37164	-0.00016993	-0.64	-0.00029264	457.24014011931797	38.74	0.9	38.74	38.319	39.219	0					40	23	3	0	0	0	0.027866	1	3340	3340		15.642	0	1	1088200			46752	4290	32435	32487	52137	52137					0.0067602385800000775
LQREKYQLRYK	11	Unmodified	_LQREKYQLRYK_					0	0	0			REV__KIF16B|p.E899K|1|0.07|ENSG00000089177|chr20:16379307-16379307|C/T|missense_variant	REV__KIF16B|p.E899K|1|0.07|ENSG00000089177|chr20:16379307-16379307|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7931213378906	3	508.959692	1523.85725	1.5039	0.00076543	3.9767	0.002024	5.4806	0.0027894	508.96168965297534	16.991	0.50393	16.837	16.706	17.209	-0.15403					16	9	3	0	0	0	0.024876	1	154	154		9.2118	6.0005	1	58414	+		46753	36180	32436	32488	52138	52138					0.1162716011701832
LQRFLFRLLAR	11	Unmodified	_LQRFLFRLLAR_					0	0	0			REV__nc|ENSG00000140955|Q8NCV1-2|ADAD2	REV__nc|ENSG00000140955|Q8NCV1-2|ADAD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.28466796875	3	478.301501	1431.88267	0.3301	0.00015789	1.3127	0.00062786	1.6428	0.00078574	478.3016749834386	76.002	0.87507	76.002	75.844	76.719	0					37	21	2	0	0	0	0.024856	1	9377	9377		5.6988	0	1	160720	+		46754	36721	32437	32489	52139	52139					0.18400679430124
LQRGSPGQAL	10	Unmodified	_LQRGSPGQAL_					0	0	0		ENST00000597582.1_1_19:58880485-58881257:-|nuORF;ENST00000427624.2_1_19:58880485-58892377:-|nuORF	ENST00000597582.1_1_19:58880485-58881257:-|nuORF	ENST00000597582.1_1_19:58880485-58881257:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.30322265625	2	513.788173	1025.56179	0.33653	0.00017291	-1.906	-0.0009793	-1.5695	-0.00080639	513.7874515623756	37.152	0.78819	36.942	36.605	37.393	-0.2092					28	19	3	0	0	0	0.03519	1	2965	2965		32.812	0	1	72003			46755	14116	32438	32490	52140	52140					0.05003377049024493
LQRHNAPRTF	10	Unmodified	_LQRHNAPRTF_					0	0	0			REV__ENST00000527982.1_1_11:251545-251650:+|nuORF	REV__ENST00000527982.1_1_11:251545-251650:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.8951721191406	3	413.895022	1238.66324	0.38251	0.00015832	-0.22789	-9.4322E-05	0.15462	6.3996E-05	413.89498890421856	27.338	1.0906	27.338	26.908	27.999	0					97	28	4	0	0	0	0.70466	1	1477	1477		66.962	5.2706	1	8109900	+		46756	27777	32439	32491	52141	52141					0.053452484715762694
LQRIDQEL	8	Unmodified	_LQRIDQEL_					0	0	0		nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2-6|NIBAN3;nc|ENSG00000167483|Q86XR2-4|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3	nc|ENSG00000167483|Q86XR2-2|NIBAN3	nc|ENSG00000167483|Q86XR2-2|NIBAN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76416015625	2	507.782556	1013.55056	-0.4202	-0.00021337	2.0835	0.001058	1.6634	0.00084462	507.7839797732029	22.584	0.69981	22.509	22.13	22.829	-0.075296					33	14	3	0	0	0	0.027866	1	781	781		71.296	5.4925	1	119830			46757	18479	32440	32492	52142	52142					0.04432554954883017
LQRIHAEIKN	10	Unmodified	_LQRIHAEIKN_					0	0	0		PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant;ENSG00000164985|ENST00000380733|PSIP1	PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3544311523438	2	611.356754	1220.69895	-1.352	-0.00082658	0.3803	0.0002325	-0.97175	-0.00059408	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.0992	1	11837	11837		32.812	3.6424	1	11699000			46758	7353	32441	32493	52143	52143					0.09743285928584555
LQRKQAAL	8	Unmodified	_LQRKQAAL_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2722473144531	2	464.290351	926.566149	-0.10331	-4.7968E-05	1.3485	0.00062611	1.2452	0.00057815	464.2910085197731	19.622	0.38781	19.503	19.299	19.686	-0.11872					11	7	3	0	0	0	0.027866	1	439	439		40.573	0	1	38524	+		46759	23043	32442	32494	52144	52144					0.09992886262602951
LQRKSQIKN	9	Unmodified	_LQRKSQIKN_					0	0	0			REV__ENST00000334982.8_1_20:20013985-20014090:+|nuORF	REV__ENST00000334982.8_1_20:20013985-20014090:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.282958984375	2	557.838197	1113.66184	0.28551	0.00015927	-4.0921	-0.0022828	-3.8066	-0.0021235	557.835907860738	58.142	0.3983	58.142	57.982	58.38	0					20	10	2	0	0	0	0.024477	1	6573	6573		35.618	1.4457	1	650190	+		46760	30526	32443	32495	52145	52145					0.10955614382851309
LQRLAPVV	8	Unmodified	_LQRLAPVV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2901611328125	2	448.28982	894.565087	-0.15755	-7.0627E-05	0.30883	0.00013844	0.15128	6.7818E-05	448.28978826424395	53.079	0.81418	52.932	52.569	53.383	-0.14723					55	21	4	0	0	0	0.56067	1	5687	5687		79.939	19.645	1	2533500	+		46761	25436	32444	32496	52146	52146					0.11358671893697192
LQRLAPVV	8	Unmodified	_LQRLAPVV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2897644042969	2	448.28982	894.565087	0.027276	1.2228E-05	0.060793	2.7253E-05	0.088069	3.948E-05	448.28967941622193	52.864	0.99897	52.959	52.408	53.407	0.095436					58	26	3	0	0	0	0.43637	1	5612	5612		92.191	28.884	1	2652400	+		46762	25436	32444	32496	52147	52147					0.11358671893697192
LQRLAPVV	8	Unmodified	_LQRLAPVV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	448.28982	894.565087	-0.19046	-8.5379E-05	0.18931	8.4864E-05	-0.0011488	-5.1498E-07	448.28977296816504	53.003	0.98671	53.003	52.595	53.582	0	0.038053	-3.3528E-06	NaN	92.191	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2627800	+		46763	25436	32444	32496							0.11358671893697192
LQRLAPVV	8	Unmodified	_LQRLAPVV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	448.28982	894.565087	-0.15755	-7.0627E-05	0.30883	0.00013844	0.15128	6.7818E-05	448.28978826424395	53.079	0.81418	52.932	52.569	53.383	-0.14723	-0.032555	0.00010381	NaN	92.191	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2533500	+		46764	25436	32444	32496							0.11358671893697192
LQRLAPVV	8	Unmodified	_LQRLAPVV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	448.28982	894.565087	0.027276	1.2228E-05	0.060793	2.7253E-05	0.088069	3.948E-05	448.28967941622193	52.864	0.99897	52.959	52.408	53.407	0.095436	-0.0054984	-0.00011858	NaN	92.191	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2652400	+		46765	25436	32444	32496							0.11358671893697192
LQRLIKSR	8	Unmodified	_LQRLIKSR_					0	0	0		nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-3|CACNB2;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-4|CACNB2;ENSG00000165995|ENST00000324631|CACNB2;nc|ENSG00000067191|Q02641-3|CACNB1;nc|ENSG00000067191|Q02641-2|CACNB1;ENSG00000067191|ENST00000394303|CACNB1;nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4;nc|ENSG00000283228|O00305-4|CACNB4	nc|ENSG00000165995|Q08289-10|CACNB2;nc|ENSG00000283228|O00305-2|CACNB4	nc|ENSG00000165995|Q08289-10|CACNB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.79833984375	2	507.33255	1012.65055	0.86122	0.00043692	-0.4242	-0.00021521	0.43702	0.00022171	507.33229978783197	20.267	0.2895	20.071	19.947	20.236	-0.19577					7	5	2	0	0	0	0.027866	1	516	516		27.882	0	1	14579			46766	18471;9134	32445	32497	52148	52148					0.1447283707935867
LQRLLFAR	8	Unmodified	_LQRLLFAR_					0	0	0			REV__ENST00000394863.7_2_16:31487827-31487881:+|nuORF	REV__ENST00000394863.7_2_16:31487827-31487881:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.26904296875	2	508.821818	1015.62908	-0.72819	-0.00037052	-2.6135	-0.0013298	-3.3417	-0.0017003	508.82034937182976	44.936	0.27528	44.725	44.595	44.871	-0.21109					9	6	2	0	0	0	0.027866	1	4224	4224		19.36	2.8868	1	118520	+		46767	31679	32446	32498	52149	52149					0.12189452050643013
LQRLSWYI	8	Unmodified	_LQRLSWYI_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8060913085938	2	539.805834	1077.59712	-0.61601	-0.00033253	-0.084976	-4.587E-05	-0.70099	-0.0003784	539.8054598714367	103.14	0.47436	102.97	102.76	103.24	-0.17034					23	11	3	0	0	0	0.87148	1	12817	12817		53.351	5.4358	1	292430	+		46768	25520	32447	32499	52150	52150					0.061420395768209346
LQRLTPSL	8	Unmodified	_LQRLTPSL_					0	0	0			REV__NLRP11|p.F801L|1|0.1|ENSG00000179873|chr19:55792413-55792413|A/G|missense_variant	REV__NLRP11|p.F801L|1|0.1|ENSG00000179873|chr19:55792413-55792413|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7823181152344	2	464.284734	926.554916	0.45272	0.00021019	-0.1383	-6.4209E-05	0.31443	0.00014598	464.28437466155026	45.569	0.85209	45.613	45.344	46.196	0.04388					44	24	3	0	0	0	0.027866	1	4435	4435		35.618	0	1	1132000	+		46769	37286	32448	32500	52151	52151					0.08870064168456793
LQRMEALI	8	Unmodified	_LQRMEALI_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2503967285156	2	487.278595	972.542637	-0.801	-0.00039031	-3.8969	-0.0018989	-4.6979	-0.0022892	487.2764719532207	33.201	0.13807	33.208	33.117	33.255	0.0066261					5	3	2	0	0	0	0.027866	1	2366	2366		40.573	5.3719	1	57843			46770	1210	32449	32501	52152	52152					0.0552670443378247
LQRMGEPY	8	Unmodified	_LQRMGEPY_					0	0	0		ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2621765136719	2	497.244752	992.474951	-0.99544	-0.00049498	2.302	0.0011447	1.3066	0.0006497	497.2468448619265	44.164	0.17337	44.06	43.96	44.134	-0.10468					10	4	3	0	0	0	0.027866	1	4114	4114		37.159	0	1	146290			46771	7826	32450	32502	52153	52153					-0.02158745497035852
LQRMGLLP	8	Oxidation (M)	_LQRM(Oxidation (M))GLLP_		LQRM(1)GLLP		LQRM(63)GLLP	0	0	1			REV__ENST00000513216.5_3_4:68380340-68383883:-|nuORF	REV__ENST00000513216.5_3_4:68380340-68383883:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2719421386719	2	472.273312	942.532072	-0.26523	-0.00012526	-3.3495	-0.0015819	-3.6147	-0.0017071	472.2716241578891	64.776	0.80852	64.776	64.384	65.192	0					55	21	4	0	0	0	0.75307	1	7658	7658		62.978	6.2574	1	3944100	+		46772	34149	32451	32503	52154	52154		928			0.05850721779347623
LQRMLIDV	8	Unmodified	_LQRMLIDV_					0	0	0		nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF;ENSG00000144481|ENST00000324695|TRPM8	nc|ENSG00000144481|Q7Z2W7-4|TRPM8	nc|ENSG00000144481|Q7Z2W7-4|TRPM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.28436279296875	2	494.28642	986.558287	-0.55739	-0.00027551	0.3638	0.00017982	-0.19359	-9.569E-05	494.28645822732386	51.586	0.93964	51.438	51.193	52.132	-0.14735					86	26	4	0	0	0	0.81662	1	5445	5445		57.811	3.035	1	4971300			46773	5744	32452	32504	52155	52155					0.06446990950826148
LQRMLTRHLK	10	Unmodified	_LQRMLTRHLK_					0	0	0		ENSG00000105261|ENST00000633214|OVOL3	ENSG00000105261|ENST00000633214|OVOL3	ENSG00000105261|ENST00000633214|OVOL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	648.3927001953125	2	648.390074	1294.76559	1.2288	0.00079673	2.9681	0.0019245	4.1969	0.0027212	648.3919129843497	105.35	0.84909	105.35	104.93	105.78	0.00096893					59	28	4	0	0	0	1.0992	1	13482	13482		32.812	3.6424	1	1056100			46774	2653	32453	32505	52156	52156					0.13000198218855985
LQRPAGAK	8	Unmodified	_LQRPAGAK_					0	0	0		ENST00000576949.1_1_17:7133875-7137617:-|nuORF;ENST00000572285.5_1_17:7133284-7137536:-|nuORF;ENSG00000004975|ENST00000005340|DVL2	ENST00000576949.1_1_17:7133875-7137617:-|nuORF	ENST00000576949.1_1_17:7133875-7137617:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.520751953125	2	420.756144	839.497735	0.093589	3.9378E-05	-0.17767	-7.4755E-05	-0.084079	-3.5377E-05	420.7558792467169	31.905	0.46028	31.668	31.45	31.91	-0.23667					15	10	2	0	0	0	0.027866	1	2144	2144		16.473	4.2663	1	70791			46775	754	32454	32506	52157	52157					0.07156641682740883
LQRPPCTLPD	10	Unmodified	_LQRPPCTLPD_					0	0	0			REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2964477539062	2	570.297516	1138.58048	-0.74203	-0.00042318	-2.0892	-0.0011915	-2.8313	-0.0016147	570.2961074701312	61.272	0.62186	61.096	60.833	61.455	-0.1761					34	14	3	0	0	0	0.77808	1	6859	6859		62.107	12.666	1	1477000	+		46776	37268	32455	32507	52158	52158					0.01673170628578191
LQRPPCTLPD	10	Unmodified	_LQRPPCTLPD_					0	0	0			REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	570.297516	1138.58048	-0.57767	-0.00032944	0.379	0.00021614	-0.19867	-0.0001133	570.2960063667887	61.187	1.2774	61.187	60.366	61.643	0	0.00044795	0.0029111	NaN	62.107	53	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135800	+		46777	37268	32455	32507							0.01673170628578191
LQRPPCTLPD	10	Unmodified	_LQRPPCTLPD_					0	0	0			REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	570.297516	1138.58048	0.022082	1.2594E-05	-1.4403	-0.00082139	-1.4182	-0.00080879	570.2957938941579	61.48	0.56004	61.254	60.974	61.534	-0.22663	0.066894	0.00083607	NaN	62.107	31	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161600	+		46778	37268	32455	32507							0.01673170628578191
LQRPPCTLPD	10	Unmodified	_LQRPPCTLPD_					0	0	0			REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	570.297516	1138.58048	-0.75871	-0.00043269	1.0664	0.00060817	0.30769	0.00017548	570.2961055739277	61.161	1.1277	61.232	60.384	61.512	0.071125	0.045315	0.0036952	NaN	62.107	60	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1103900	+		46779	37268	32455	32507							0.01673170628578191
LQRPPCTLPD	10	Unmodified	_LQRPPCTLPD_					0	0	0			REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	REV__NCKAP5L|p.M1250T|1|0.21|ENSG00000167566|chr12:49792489-49792489|A/G|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	570.297516	1138.58048	-0.74203	-0.00042318	-2.0892	-0.0011915	-2.8313	-0.0016147	570.2961074701312	61.272	0.62186	61.096	60.833	61.455	-0.1761	-0.09076	9.5888E-05	NaN	62.107	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1477000	+		46780	37268	32455	32507							0.01673170628578191
LQRQAGLLE	9	Unmodified	_LQRQAGLLE_					0	0	0		chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|353|3|anti-sense;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|90;chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|68;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|104;chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|32;chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|86;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|291|2|anti-sense	chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76	chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8424682617188	2	514.298373	1026.58219	0.13744	7.0684E-05	-0.73289	-0.00037693	-0.59546	-0.00030624	514.2979526586911	23.518	1.09	23.316	22.967	24.057	-0.20193					44	24	3	0	0	0	0.024263	1	947	947		71.296	4.8664	1	382970			46781	283	32456	32508	52159	52159					0.06996547708831713
LQRQAGLLE	9	Unmodified	_LQRQAGLLE_					0	0	0		chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|353|3|anti-sense;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|90;chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|68;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|104;chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|32;chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|86;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|291|2|anti-sense	chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76	chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.298373	1026.58219	-0.57174	-0.00029404	0.42548	0.00021882	-0.14626	-7.5219E-05	514.2983229096177	23.288	1.1927	23.227	22.663	23.856	-0.06086	-0.038246	0.0011182	NaN	34.173	48	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279820			46782	283	32456	32508							0.06996547708831713
LQRQAGLLE	9	Unmodified	_LQRQAGLLE_					0	0	0		chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|353|3|anti-sense;chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|90;chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|68;chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|104;chr8:127290060-127311835|129|17.6|0.0|12.04|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|32;chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|86;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|291|2|anti-sense	chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76	chr15:53523322-53684228|237|21.71|0.04|9.0|-|2|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|76	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.298373	1026.58219	-0.94571	-0.00048638	0.8668	0.00044579	-0.078913	-4.0585E-05	514.2985661617632	23.174	1.2571	23.25	22.609	23.866	0.076241	-0.014574	0.0015721	NaN	34.173	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263610			46783	283	32456	32508							0.06996547708831713
LQRQESSVRL	10	Unmodified	_LQRQESSVRL_					0	0	0		ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	405.89971923828125	3	405.898321	1214.67313	0.42748	0.00017351	3.234	0.0013127	3.6615	0.0014862	405.8995629340533	23.689	1.0569	23.509	23.067	24.124	-0.17989					66	24	4	0	0	0	0.77808	1	959	959		56.632	5.1045	1	1289900			46784	1931	32457	32509	52160	52160					0.0743839168633258
LQRQQVPA	8	Unmodified	_LQRQQVPA_					0	0	0			REV__ENST00000262304.8_1_16:2143686-2144130:-|nuORF	REV__ENST00000262304.8_1_16:2143686-2144130:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.78192138671875	2	470.272158	938.529764	-0.87034	-0.0004093	-0.95681	-0.00044996	-1.8272	-0.00085926	470.27115764736254	44.478	0.71117	44.333	43.921	44.632	-0.14471					29	20	2	0	0	0	0.027866	1	4160	4160		24.203	0	1	164130	+		46785	29655	32458	32510	52161	52161					0.058040093658974
LQRRIAEG	8	Unmodified	_LQRRIAEG_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7906494140625	2	471.777608	941.540663	-0.21377	-0.00010085	0.68272	0.00032209	0.46894	0.00022124	471.77786462470465	25.314	0.64205	25.314	25.052	25.694	0					30	15	3	0	0	0	0.027866	1	1233	1233		25.45	18.715	1	268360	+		46786	25841	32459	32511	52162	52162					0.06755411740186901
LQRRIAEG	8	Unmodified	_LQRRIAEG_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.777608	941.540663	-0.47449	-0.00022385	1.4933	0.0007045	1.0188	0.00048065	471.77821303569306	25.315	0.68604	25.281	25.079	25.765	-0.034395	0.02598	0.0043592	NaN	25.45	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235460	+		46787	25841	32459	32511							0.06755411740186901
LQRRIAEG	8	Unmodified	_LQRRIAEG_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.777608	941.540663	-0.38835	-0.00018321	-3.7133	-0.0017518	-4.1016	-0.0019351	471.77580443809535	25.547	0.62736	25.32	24.975	25.602	-0.22683	0.064845	-0.00055348	NaN	25.45	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352970	+		46788	25841	32459	32511							0.06755411740186901
LQRRIAEG	8	Unmodified	_LQRRIAEG_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.777608	941.540663	-0.054485	-2.5705E-05	-4.569	-0.0021556	-4.6235	-0.0021813	471.7755875711696	25.281	0.63396	25.11	24.737	25.371	-0.17078	-0.14475	-0.0013609	NaN	25.45	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269610	+		46789	25841	32459	32511							0.06755411740186901
LQRRIAEG	8	Unmodified	_LQRRIAEG_					0	0	0			REV__nc|ENSG00000165115|Q86VH2-3|KIF27	REV__nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.777608	941.540663	0.020676	9.7544E-06	-4.1612	-0.0019632	-4.1405	-0.0019534	471.7755372353314	25.422	0.75873	25.25	24.821	25.579	-0.17151	-0.0048627	-0.0009761	NaN	25.45	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315540	+		46790	25841	32459	32511							0.06755411740186901
LQRRLCRF	8	Unmodified	_LQRRLCRF_					0	0	0		ENST00000471629.1_1_20:43353203-43355945:+|nuORF	ENST00000471629.1_1_20:43353203-43355945:+|nuORF	ENST00000471629.1_1_20:43353203-43355945:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.7582397460938	2	546.316377	1090.6182	-0.71278	-0.00038941	3.5227	0.0019245	2.8099	0.0015351	546.3169752751401	25.535	0.54969	25.363	25.2	25.75	-0.17151					18	12	3	0	0	0	0.027866	1	1241	1241		12.959	0	1	57190			46791	14961	32460	32512	52163	52163					0.07651726404719739
LQRSFKAP	8	Unmodified	_LQRSFKAP_					0	0	0			REV__ENST00000326035.6_1_5:43192477-43245219:+|nuORF	REV__ENST00000326035.6_1_5:43192477-43245219:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.7920837402344	2	473.777077	945.5396	0.99471	0.00047127	2.8661	0.0013579	3.8608	0.0018292	473.7782856837538	18.573	0.54403	18.417	18.099	18.643	-0.15637					19	10	3	0	0	0	0.027866	1	301	301		85.359	3.0545	1	48554	+		46792	30399	32461	32513	52164	52164					0.06465197371267095
LQRSLLLQA	9	Unmodified	_LQRSLLLQA_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2797241210938	2	521.324391	1040.63423	-0.015627	-8.147E-06	-0.081339	-4.2404E-05	-0.096967	-5.0551E-05	521.3242972038607	59.288	0.69884	59.374	59.099	59.798	0.085682					31	18	3	0	0	0	0.024397	1	6746	6746		39.253	0	1	431580			46793	10660	32462	32514	52165	52165					0.11553711122610366
LQRTVHDME	9	Unmodified	_LQRTVHDME_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.2864379882812	2	564.776948	1127.53934	-0.43071	-0.00024326	1.2788	0.00072226	0.84812	0.000479	564.7778150655988	67.36	0.93187	67.383	67.191	68.123	0.023911					56	23	3	0	0	0	0.024405	1	7933	7933		44.117	12.587	1	1015000			46794	5725	32463	32515	52166	52166					-0.01932590410888224
LQRTVHDME	9	Unmodified	_LQRTVHDME_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.776948	1127.53934	0.84386	0.00047659	-0.22462	-0.00012686	0.61925	0.00034974	564.7767701711937	68.037	0.78657	67.782	67.323	68.109	-0.25516	0.075824	-0.0006797	NaN	42.396	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266420			46795	5725	32463	32515							-0.01932590410888224
LQRTVHDME	9	Unmodified	_LQRTVHDME_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.776948	1127.53934	0.32111	0.00018136	0.66931	0.00037801	0.99042	0.00055937	564.7769961939528	68.035	0.73141	67.801	67.387	68.119	-0.23376	0.094777	0.00033004	NaN	42.396	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255320			46796	5725	32463	32515							-0.01932590410888224
LQRTVHDME	9	Unmodified	_LQRTVHDME_					0	0	0		nc|ENSG00000144283|Q99569-2|PKP4;ENSG00000144283|ENST00000389759|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	nc|ENSG00000144283|Q99569-2|PKP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.776948	1127.53934	0.14085	7.9547E-05	0.31097	0.00017563	0.45182	0.00025518	564.7769758763383	68.097	0.56136	67.859	67.508	68.07	-0.23814	0.15228	-7.4724E-05	NaN	42.396	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250590			46797	5725	32463	32515							-0.01932590410888224
LQRYAALK	8	Unmodified	_LQRYAALK_					0	0	0			REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.767822265625	2	481.792727	961.5709	-0.50765	-0.00024458	0.49593	0.00023894	-0.011714	-5.6437E-06	481.79413616891077	44.344	0.10675	44.239	44.168	44.275	-0.10468					4	2	2	0	0	0	0.027866	1	4139	4139		33.516	15.191	1	30405	+		46798	24862	32464	32516	52167	52167					0.08857770405359133
LQRYFPAQ	8	Unmodified	_LQRYFPAQ_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	MSMS	OPSCC_40_ClassI_Rep-3	6	511.7758483886719	2	511.774534	1021.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.907	1	16.653	16.153	17.153	-0.25378								0	0	0	1.0126	1	95	95		19.36	0	1				46799	8428	32465	32517	52168	52168					0.024608935086462225
LQSALPAPG	9	Unmodified	_LQSALPAPG_					0	0	0			REV__ENST00000561028.5_1_14:24583940-24584093:-|nuORF	REV__ENST00000561028.5_1_14:24583940-24584093:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2710266113281	2	427.242535	852.470518	-0.71236	-0.00030435	2.2816	0.00097479	1.5692	0.00067044	427.2437410743503	39.124	0.31907	39.025	38.88	39.199	-0.098755					11	8	2	0	0	0	0.024466	1	3345	3345		12.207	0.69583	1	67036	+		46800	35163	32466	32518	52169	52169					0.03838113351696393
LQSDHQPK	8	Unmodified	_LQSDHQPK_					0	0	0		nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.26629638671875	2	476.745973	951.477394	0.27008	0.00012876	0.77497	0.00036946	1.045	0.00049822	476.746505405097	31.735	0.78298	31.494	30.995	31.778	-0.24109					30	19	2	0	0	0	0.027866	1	2128	2128		16.473	0	1	1273300			46801	2038	32467	32519	52170	52170					-0.000285737677245379
LQSEKSDL	8	Unmodified	_LQSEKSDL_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2249450683594	2	460.24019	918.465826	-0.30248	-0.00013922	0.79993	0.00036816	0.49745	0.00022894	460.240450226138	27.337	0.61577	27.324	27.067	27.683	-0.012981					28	16	2	0	0	0	0.027866	1	1481	1481		21.96	0	1	564310			46802	10614	32468	32520	52171	52171					0.0033318441828669165
LQSFPQLLQ	9	Unmodified	_LQSFPQLLQ_					0	0	0		ENST00000425713.1_1_13:19700631-19713554:+|nuORF;nc|ENSG00000102384|Q92674-2|CENPI;ENSG00000102384|ENST00000682095|CENPI	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.30126953125	2	537.303124	1072.5917	-1.0248	-0.00055065	-2.6029	-0.0013985	-3.6277	-0.0019492	537.3015337813486	56.777	1.005	56.613	56.313	57.318	-0.16431					57	27	4	0	0	0	0.29158	1	6322	6322		76.774	2.5191	1	3827000			46803	2407	32469	32521	52172	52172					0.058303159943761784
LQSFQHHGPG	10	Unmodified	_LQSFQHHGPG_					0	0	0		nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	nc|ENSG00000135248|Q96KD3-3|GARIN1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.78515625	2	554.270147	1106.52574	-0.4376	-0.00024255	1.7349	0.00096161	1.2973	0.00071906	554.2711335324298	43.122	0.50953	43.122	42.823	43.332	0					22	13	2	0	0	0	0.03519	1	4042	4042		40.778	0	1	408880			46804	18294	32470	32522	52173	52173					-0.023260801278183862
LQSHAKAIV	9	Unmodified	_LQSHAKAIV_					0	0	0		nc|ENSG00000117425|Q9Y6C5-2|PTCH2;ENSG00000117425|ENST00000372192|PTCH2	nc|ENSG00000117425|Q9Y6C5-2|PTCH2	nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7907409667969	2	483.790184	965.565815	-0.049389	-2.3894E-05	-0.69177	-0.00033467	-0.74116	-0.00035856	483.7898328084128	45.911	1.6573	45.911	45.31	46.967	0					115	46	4	0	0	0	0.39228	1	4533	4533		66.429	7.6473	1	22718000			46805	3627	32471	32523	52174	52174					0.08165466542743616
LQSICILAGD	10	Unmodified	_LQSICILAGD_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.80810546875	2	516.773342	1031.53213	-0.17024	-8.7975E-05	-3.2306	-0.0016695	-3.4008	-0.0017575	516.7712574236322	93.596	0.21531	93.596	93.515	93.73	0					5	4	2	0	0	0	0.03519	1	11883	11883		44.377	16.495	1	27234			46806	2029	32472	32524	52175	52175					0.017626769886874172
LQSIFQVLL	9	Unmodified	_LQSIFQVLL_					0	0	0		ENSG00000143994|ENST00000316470|ABHD1;ENST00000489120.5_1_2:27346693-27351996:+|nuORF;nc|ENSG00000143994|Q96SE0-3|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2850341796875	2	530.823692	1059.63283	-0.23803	-0.00012635	1.0745	0.00057034	0.83642	0.00044399	530.8241778960548	70.058	0.85976	70.058	69.71	70.569	0					55	24	3	0	0	0	0.024323	1	8519	8519		53.351	0	1	2786200			46807	5708	32473	32525	52176	52176					0.10540077033851958
LQSILKQL	8	Unmodified	_LQSILKQL_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.78973388671875	2	471.80276	941.590967	-0.33721	-0.0001591	0.72671	0.00034286	0.3895	0.00018377	471.8027885725601	55.803	0.94825	55.901	55.598	56.546	0.097931					58	25	4	0	0	0	0.027866	1	6079	6079		32.812	0	1	3193600	+		46808	23532	32474	32526	52177	52177					0.11783521345330428
LQSKRARSS	9	Unmodified	_LQSKRARSS_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.793701171875	2	516.799072	1031.58359	-0.19895	-0.00010282	-3.3446	-0.0017285	-3.5436	-0.0018313	516.7971750151048	101.61	1.208	101.62	100.7	101.91	0.0090256					44	27	3	0	0	0	0.024541	1	12861	12861		26.693	0	1	106180			46809	908	32475	32527	52178	52178					0.06906181797603494
LQSKRELDI	9	Unmodified	_LQSKRELDI_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.307373046875	2	551.316763	1100.61897	-1.1123	-0.0006132	-1.7576	-0.00096901	-2.8699	-0.0015822	551.3156226795732	33.28	1.0316	33.286	32.928	33.959	0.0066223					62	27	4	0	0	0	0.022482	1	2368	2368		93.143	0	1	5422600	+		46810	37143	32476	32528	52179	52179					0.07268799534745085
LQSKRELDI	9	Unmodified	_LQSKRELDI_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MSMS	OPSCC_39_ClassI_Rep-3	3	551.3147583007812	2	551.316763	1100.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.411	1	33.467	32.967	33.967	0.056572								0	0	0	0.061278	1	2359	2359		104.06	24.606	1		+		46811	37143	32476	32528	52180	52180					0.07268799534745085
LQSKRLPPS	9	Unmodified	_LQSKRLPPS_					0	0	0		ENST00000452801.1_1_2:238503896-238504289:+|nuORF	ENST00000452801.1_1_2:238503896-238504289:+|nuORF	ENST00000452801.1_1_2:238503896-238504289:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2981567382812	2	513.308741	1024.60293	-0.83716	-0.00042972	0.5649	0.00028997	-0.27226	-0.00013975	513.3086914098731	34.908	0.59958	34.886	34.634	35.233	-0.021763					28	15	3	0	0	0	0.024209	1	2621	2621		56.721	7.2795	1	306170			46812	14540	32477	32529	52181	52181					0.09161138088529697
LQSLVALAGP	10	Unmodified	_LQSLVALAGP_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3089294433594	2	484.792392	967.570232	-0.23451	-0.00011369	0.9867	0.00047834	0.75219	0.00036465	484.7927110899586	65.82	0.49506	65.547	65.263	65.758	-0.27282					26	13	3	0	0	0	0.03519	1	7789	7789		16.473	0	1	383390	+		46813	26116	32478	32530	52182	52182					0.08514930965645817
LQSLWFTEV	9	Unmodified	_LQSLWFTEV_					0	0	0			REV__ENST00000495893.6_1_3:169814241-169814379:-|nuORF	REV__ENST00000495893.6_1_3:169814241-169814379:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.279541015625	2	561.795132	1121.57571	0.21571	0.00012118	2.0511	0.0011523	2.2668	0.0012735	562.2976967632757	85.615	0.16684	85.477	85.368	85.535	-0.13752					5	3	2	0	0	0	0.024447	1	10369	10369		32.812	0	1	25478	+		46814	33811	32479	32531	52183	52183					0.019786097574751693
LQSNIQHVL	9	Unmodified	_LQSNIQHVL_					0	0	0		nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF	nc|ENSG00000151092|Q96IV0-3|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2974853515625	2	526.298373	1050.58219	-0.40732	-0.00021437	0.061287	3.2255E-05	-0.34603	-0.00018212	526.2983503107251	55.167	1.0364	55.017	54.711	55.747	-0.15036					77	28	4	0	0	0	0.14024	1	6061	6061		101.6	5.4103	1	9588200			46815	6176	32480	32532	52184	52184					0.05892547708845086
LQSNIQHVL	9	Unmodified	_LQSNIQHVL_					0	0	0		nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF	nc|ENSG00000151092|Q96IV0-3|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2984008789062	2	526.298373	1050.58219	-0.26402	-0.00013896	-0.067712	-3.5637E-05	-0.33174	-0.00017459	526.2983237200192	54.864	1.1961	54.962	54.66	55.856	0.098015					79	32	4	0	0	0	0.12602	1	5964	5964		104.75	5.3716	1	8576000			46816	6176	32480	32532	52185	52185					0.05892547708845086
LQSNKKKKN	9	Unmodified	_LQSNKKKKN_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2990112304688	2	544.332747	1086.65094	-0.77671	-0.00042279	3.9031	0.0021246	3.1264	0.0017018	544.3348227586281	53.542	0.60826	53.345	53.011	53.619	-0.19739					34	16	3	0	0	0	0.024344	1	5653	5653		54.776	8.8041	1	495670	+		46817	23842	32481	32533	52186	52186					0.11108212008548435
LQSNKKKKN	9	Unmodified	_LQSNKKKKN_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.332747	1086.65094	-0.60508	-0.00032936	4.3506	0.0023682	3.7456	0.0020388	544.3351172665026	53.465	0.6226	53.338	52.951	53.574	-0.12706	-0.019985	0.00026011	NaN	51.193	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532870	+		46818	23842	32481	32533							0.11108212008548435
LQSNKKKKN	9	Unmodified	_LQSNKKKKN_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.332747	1086.65094	-0.29537	-0.00016078	3.6367	0.0019796	3.3413	0.0018188	544.3347752189528	53.636	0.61131	53.39	53.013	53.625	-0.2453	0.032575	-0.00051712	NaN	51.193	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431980	+		46819	23842	32481	32533							0.11108212008548435
LQSQVKNNQ	9	Unmodified	_LQSQVKNNQ_					0	0	0		nc|ENSG00000186399|I6L899-2|GOLGA8R;nc|ENSG00000206127|A6NCC3-1|GOLGA8O;ENSG00000186399|ENST00000327271|GOLGA8R;ENSG00000232653|ENST00000448387|GOLGA8N;ENSG00000206127|ENST00000509311|GOLGA8O;ENSG00000178115|ENST00000562783|GOLGA8Q	nc|ENSG00000186399|I6L899-2|GOLGA8R	nc|ENSG00000186399|I6L899-2|GOLGA8R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8082275390625	2	529.783087	1057.55162	-0.59573	-0.00031561	1.6898	0.00089523	1.0941	0.00057962	529.7851764294596	73.576	0.56802	73.305	73.009	73.577	-0.27126					23	14	2	0	0	0	0.024506	1	8941	8941		10.866	0	1	452370			46820	8794	32482	32534	52187	52187					0.025147693238068314
LQSSFPWTLY	10	Unmodified	_LQSSFPWTLY_					0	0	0		nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11	nc|ENSG00000133460|Q9BYW1|SLC2A11	nc|ENSG00000133460|Q9BYW1|SLC2A11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	621.7819213867188	2	621.313689	1240.61282	-0.79824	-0.00049596	0.82672	0.00051365	0.028479	1.7695E-05	621.3141829173873	57.394	0.46989	57.192	56.962	57.431	-0.20209					21	12	2	0	0	0	0.03519	1	6229	6229		36.447	11.928	1	148080			46821	4710	32483	32535	52188	52188					0.0021428130326057726
LQSSGLTLLL	10	Unmodified	_LQSSGLTLLL_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.8187255859375	2	522.818607	1043.62266	-0.20259	-0.00010592	-0.154	-8.0515E-05	-0.3566	-0.00018644	522.8184947439032	54.503	1.0774	54.353	53.852	54.929	-0.15036					91	30	6	0	0	0	0.45367	2	5926	5926;5938		93.195	12.741	1	4593000			46822	18433	32484	32536	52189;52190	52189					0.10259469308630287
LQSSGLTLLL	10	Unmodified	_LQSSGLTLLL_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.8184814453125	2	522.818607	1043.62266	0.59767	0.00031248	-1.0377	-0.00054253	-0.44002	-0.00023005	522.8179807814163	54.182	0.9421	54.28	54.006	54.949	0.098015					75	26	4	0	0	0	0.45367	1	5838	5838		93.195	6.2609	1	4339700			46823	18433	32484	32536	52191	52191					0.10259469308630287
LQSSGLTLLL	10	Unmodified	_LQSSGLTLLL_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	522.818607	1043.62266	-1.1038	-0.00057709	0.58846	0.00030766	-0.51535	-0.00026943	522.8187857013819	54.415	0.83461	54.415	54.109	54.944	0	0.065631	0.00093748	NaN	93.195	75	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4419900			46824	18433	32484	32536							0.10259469308630287
LQSWPGQMQEG	11	Unmodified	_LQSWPGQMQEG_					0	0	0			REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.240234375	3	420.860767	1259.56047	0.013245	5.5744E-06	-4.4609	-0.0018774	-4.4477	-0.0018719	420.8586579805155	37.347	0.851	37.138	36.765	37.616	-0.2092					36	21	3	0	0	0	0.024734	1	2955	2955		30.139	12.972	1	88482	+		46825	33754	32485	32537	52192	52192					-0.05892625102023885
LQTAITVAK	9	Unmodified	_LQTAITVAK_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5;ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.76129150390625	2	472.792392	943.570232	0.020751	9.811E-06	0.010851	5.1301E-06	0.031602	1.4941E-05	472.79227316858356	32.19	0.69191	32.202	31.902	32.594	0.011799					39	17	3	0	0	0	0.024397	1	2241	2241		47.657	5.2612	1	846630			46826	9631	32486	32538	52193	52193					0.09618930965655181
LQTAITVAK	9	Unmodified	_LQTAITVAK_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5;ATP13A5|p.L973Ffs*31|1|0.19|ENSG00000187527|chr3:193289992-193289993|-/G|frameshift_variant	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.792392	943.570232	0.19263	9.1076E-05	-0.070887	-3.3515E-05	0.12175	5.7561E-05	472.7922806180162	32.246	0.53969	32.246	32.03	32.569	0	0.078813	-6.7361E-05	NaN	47.657	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	786120			46827	9631	32486	32538							0.09618930965655181
LQTDRRKG	8	Unmodified	_LQTDRRKG_					0	0	0		ENST00000369102.5_2_1:150240920-150244722:+|nuORF	ENST00000369102.5_2_1:150240920-150244722:+|nuORF	ENST00000369102.5_2_1:150240920-150244722:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.25775146484375	2	487.280515	972.546476	-0.83848	-0.00040858	1.5236	0.00074241	0.6851	0.00033384	487.2805862361862	23.301	1.116	23.377	22.84	23.956	0.076241					54	25	4	0	0	0	0.027866	1	800	800		6.3127	0	1	998880			46828	12915	32487	32539	52194	52194					0.059105102518515196
LQTELQAEL	9	Unmodified	_LQTELQAEL_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7839965820312	2	522.782222	1043.54989	-0.019783	-1.0342E-05	-0.28012	-0.00014644	-0.2999	-0.00015678	522.782041559986	68.157	1.0864	67.869	67.552	68.639	-0.28834					63	27	3	0	0	0	0.16539	1	8138	8138		96.034	7.8567	1	4100000	+		46829	20485	32488	32540	52195	52195					0.029857155152058112
LQTFDRTTT	9	Unmodified	_LQTFDRTTT_					0	0	0			REV__ENSG00000176153|ENST00000389614|GPX2	REV__ENSG00000176153|ENST00000389614|GPX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7806396484375	2	541.77747	1081.54039	-0.95014	-0.00051476	-1.037	-0.00056185	-1.9872	-0.0010766	541.7760546453228	28.279	0.49068	28.11	27.847	28.337	-0.16897					15	11	2	0	0	0	0.024477	1	1639	1639		20.947	4.4738	1	63598	+		46830	26999	32489	32541	52196	52196					0.0028794722966267727
LQTFHVFQQ	9	Unmodified	_LQTFHVFQQ_					0	0	0			REV__ENSG00000131446|ENST00000307826|MGAT1	REV__ENSG00000131446|ENST00000307826|MGAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.8534545898438	2	574.298373	1146.58219	-0.049922	-2.867E-05	-0.44058	-0.00025302	-0.4905	-0.00028169	574.2979985970882	63.797	0.69226	63.569	63.174	63.866	-0.22773					29	17	2	0	0	0	0.024457	1	7268	7268		21.96	0	1	797250	+		46831	23211	32490	32542	52197	52197					0.014765477088531043
LQTGQMPGL	9	Unmodified	_LQTGQMPGL_					0	0	0		nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2;ENST00000456496.6_1_7:149575832-149576763:+|nuORF;ENST00000471877.5_1_7:149575832-149576763:+|nuORF	nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2	nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7446594238281	2	472.747127	943.479702	0.12763	6.0338E-05	-3.8515	-0.0018208	-3.7239	-0.0017604	472.74515791392236	49.097	0.79708	48.944	48.646	49.443	-0.15276					47	21	3	0	0	0	0.42604	1	5021	5021		64.207	0	1	3535000			46832	18511	32491	32543	52198	52198					0.00570138645730367
LQTGTVLSLL	10	Unmodified	_LQTGTVLSLL_					0	0	0			REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.8187255859375	2	522.818607	1043.62266	-1.1038	-0.00057709	0.58846	0.00030766	-0.51535	-0.00026943	522.8187857013819	54.415	0.83461	54.415	54.109	54.944	0					75	23	4	0	0	0	0.62431	1	5945	5945		74.255	0.28031	1	4419900	+		46833	27690	32492	32544	52199	52199					0.10259469308630287
LQTGTVLSLL	10	Unmodified	_LQTGTVLSLL_					0	0	0			REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.818359375	2	522.818607	1043.62266	0.59767	0.00031248	-1.0377	-0.00054253	-0.44002	-0.00023005	522.8179807814163	54.182	0.9421	54.28	54.006	54.949	0.098015					75	26	4	0	0	0	0.57594	2	5827	5827;5852		79.713	0	1	4339700	+		46834	27690	32492	32544	52200;52201	52200					0.10259469308630287
LQTINEVGGAD	11	Unmodified	_LQTINEVGGAD_					0	0	0			REV__ENSG00000120658|ENST00000690772|ENOX1	REV__ENSG00000120658|ENST00000690772|ENOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.7926025390625	2	558.78021	1115.54587	-0.75899	-0.00042411	-0.11665	-6.5183E-05	-0.87564	-0.00048929	558.779650680125	57.506	0.66871	57.328	56.886	57.554	-0.17776					56	17	6	0	0	0	0.02475	1	6308	6308		28.081	0	1	897040	+		46835	22545	32493	32545	52202	52202					-0.007283739784952559
LQTINEVGGAD	11	Unmodified	_LQTINEVGGAD_					0	0	0			REV__ENSG00000120658|ENST00000690772|ENOX1	REV__ENSG00000120658|ENST00000690772|ENOX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.78021	1115.54587	0.11313	6.3213E-05	-2.3108	-0.0012912	-2.1977	-0.001228	558.7790598772757	57.564	0.30358	57.389	57.268	57.571	-0.1749	0.013181	-0.0012861	NaN	28.081	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102360	+		46836	22545	32493	32545							-0.007283739784952559
LQTINEVGGAD	11	Unmodified	_LQTINEVGGAD_					0	0	0			REV__ENSG00000120658|ENST00000690772|ENOX1	REV__ENSG00000120658|ENST00000690772|ENOX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.78021	1115.54587	-0.32199	-0.00017992	-2.4386	-0.0013626	-2.7606	-0.0015426	558.779411084608	57.315	0.30202	57.411	57.127	57.429	0.095306	0.03466	-0.0014289	NaN	28.081	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157790	+		46837	22545	32493	32545							-0.007283739784952559
LQTKHNALK	9	Unmodified	_LQTKHNALK_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2985229492188	2	526.81419	1051.61383	-0.74378	-0.00039183	0.66439	0.00035001	-0.079387	-4.1822E-05	526.8143882537768	38.66	0.45938	38.561	38.278	38.737	-0.098755					23	11	3	0	0	0	0.024209	1	3227	3227		56.721	9.0637	1	170890			46838	10259	32494	32546	52203	52203					0.09008540462787096
LQTKHNALK	9	Unmodified	_LQTKHNALK_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.81419	1051.61383	-1.3824	-0.00072825	0.014077	7.4158E-06	-1.3683	-0.00072083	526.814498034732	38.677	0.19408	38.504	38.388	38.582	-0.17277	-0.13403	-0.00066397	NaN	56.721	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42976			46839	10259	32494	32546							0.09008540462787096
LQTLHWRMQ	9	Unmodified	_LQTLHWRMQ_					0	0	0		ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	ENSG00000126882|ENST00000372271|FAM78A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9228820800781	3	404.881725	1211.62335	0.52901	0.00021419	2.8408	0.0011502	3.3698	0.0013644	404.8831576098455	26.202	0.27563	26.033	25.809	26.085	-0.16816					11	8	2	0	0	0	0.0245	1	1324	1324		29.17	7.4843	1	66053			46840	4221	32495	32547	52204	52204					0.02599985476672373
LQTPLPVR	8	Unmodified	_LQTPLPVR_					0	0	0			REV__ENSG00000121101|ENST00000349033|TEX14	REV__ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.798583984375	2	462.287277	922.560001	0.7174	0.00033165	-0.24353	-0.00011258	0.47387	0.00021907	462.28718933821114	59.597	1.0144	59.397	58.816	59.83	-0.20016					62	27	4	0	0	0	0.027866	1	6686	6686		32.812	11.865	1	4814200	+		46841	22582	32496	32548	52205	52205					0.09562368031083679
LQTPLPVR	8	Unmodified	_LQTPLPVR_					0	0	0			REV__ENSG00000121101|ENST00000349033|TEX14	REV__ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.798583984375	2	462.287277	922.560001	1.7751	0.00082059	-1.5294	-0.00070701	0.24568	0.00011358	462.2863865351344	59.176	0.76169	58.989	58.424	59.186	-0.18705					26	20	2	0	0	0	0.027866	1	6686	6686		32.812	11.865	1	515240	+		46842	22582	32496	32548	52206	52206					0.09562368031083679
LQTPRLQD	8	Unmodified	_LQTPRLQD_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.79217529296875	2	485.769448	969.524344	-1.0811	-0.00052517	-2.8483	-0.0013836	-3.9294	-0.0019088	485.76803573522733	83.291	2.1412	83.318	82.316	84.457	0.026558					80	49	2	0	0	0	0.027866	1	10381	10381		68.485	12.98	1	208750	+		46843	23824	32497	32549	52207	52207					0.03836285783427229
LQTRAGQLA	9	Unmodified	_LQTRAGQLA_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7768249511719	2	479.277441	956.540328	0.41467	0.00019874	-1.4395	-0.00068993	-1.0249	-0.00049119	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	0.37611	1	10412	10412		67.494	5.3863	1	1015600	+		46844	23137	32498	32550	52208	52208					0.060319920203255606
LQTSATLKDLL	11	Unmodified	_LQTSATLKDLL_					0	0	0		ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP	ENSG00000114650|ENST00000265565|SCAP	ENSG00000114650|ENST00000265565|SCAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.572021484375	3	401.571211	1201.6918	0.78603	0.00031565	0.88098	0.00035378	1.667	0.00066942	401.5714654543058	33.394	1.065	33.194	32.73	33.795	-0.20019					76	26	4	0	0	0	1.017	1	2375	2375		33.039	3.4886	1	2289500			46845	3374	32499	32551	52209	52209					0.09902508537516042
LQTSATLKDLL	11	Unmodified	_LQTSATLKDLL_					0	0	0		ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP	ENSG00000114650|ENST00000265565|SCAP	ENSG00000114650|ENST00000265565|SCAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.57196044921875	3	401.571211	1201.6918	-1.2093	-0.00048561	2.7548	0.0011063	1.5456	0.00062065	401.5722300164285	33.322	1.3812	33.156	32.679	34.06	-0.16565					87	34	4	0	0	0	0.98625	1	2352	2352		39.873	5.7867	1	1890600			46846	3374	32499	32551	52210	52210					0.09902508537516042
LQTTKPLLD	9	Unmodified	_LQTTKPLLD_					0	0	0			REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8176879882812	2	514.802957	1027.59136	-0.24011	-0.00012361	-0.31932	-0.00016439	-0.55943	-0.000288	514.8026396068386	72.858	0.87546	72.868	72.489	73.365	0.0096512					55	21	4	0	0	0	0.024319	1	8758	8758		31.53	0	1	852400	+		46847	34135	32500	32552	52211	52211					0.0786689627452688
LQTTPRRF	8	Unmodified	_LQTTPRRF_					0	0	0			REV__ENSG00000171873|ENST00000379453|ADRA1D	REV__ENSG00000171873|ENST00000379453|ADRA1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7745361328125	2	509.793258	1017.57196	-1.1374	-0.00057985	1.1188	0.00057034	-0.01865	-9.5077E-06	510.29678450854556	44.51	0.28996	44.291	44.176	44.466	-0.21939					12	7	2	0	0	0	0.027866	1	4156	4156		45.952	24.25	1	89699	+		46848	26613	32501	32553	52212	52212					0.06387984774278266
LQTVSARDPQ	10	Unmodified	_LQTVSARDPQ_					0	0	0		ENST00000466084.1_1_3:44959495-44960555:-|nuORF	ENST00000466084.1_1_3:44959495-44960555:-|nuORF	ENST00000466084.1_1_3:44959495-44960555:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.32568359375	2	557.796195	1113.57784	-0.41208	-0.00022986	-1.4559	-0.00081212	-1.868	-0.001042	558.2958724278448	53.944	0.81245	53.797	53.493	54.305	-0.14723					29	22	2	0	0	0	0.03519	1	5836	5836		44.377	15.228	1	241810			46849	14803	32502	32554	52213	52213					0.02559038495292043
LQTVSARDPQ	10	Unmodified	_LQTVSARDPQ_					0	0	0		ENST00000466084.1_1_3:44959495-44960555:-|nuORF	ENST00000466084.1_1_3:44959495-44960555:-|nuORF	ENST00000466084.1_1_3:44959495-44960555:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.796195	1113.57784	0.083234	4.6428E-05	1.3894	0.000775	1.4726	0.00082143	557.7964758342579	54.309	0.21275	54.112	53.955	54.168	-0.19739	0.15746	0.0023714	NaN	71.877	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76527			46850	14803	32502	32554							0.02559038495292043
LQVAAADQNN	10	Unmodified	_LQVAAADQNN_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3247680664062	2	522.259445	1042.50434	-0.31938	-0.0001668	4.4232	0.00231	4.1038	0.0021432	522.2614308130029	49.103	0.57262	49.103	48.864	49.437	0					20	15	2	0	0	0	0.03519	1	5108	5108		39.253	0	1	173990	+		46851	23605	32503	32555	52214	52214					-0.015215099472015936
LQVAAADQNN	10	Unmodified	_LQVAAADQNN_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.259445	1042.50434	-1.1032	-0.00057616	3.6355	0.0018987	2.5323	0.0013225	522.2616574774415	48.922	0.36158	48.996	48.807	49.169	0.074192	-0.053188	-0.00035548	NaN	64.207	27	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117720	+		46852	23605	32503	32555							-0.015215099472015936
LQVAYKYFQES	11	Unmodified	_LQVAYKYFQES_					0	0	0			REV__ENSG00000102910|ENST00000285737|LONP2	REV__ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.26654052734375	3	459.234599	1374.68197	-1.1706	-0.00053759	-0.26191	-0.00012028	-1.4325	-0.00065787	459.2344388677134	28.586	0.28631	28.341	28.162	28.448	-0.24524					9	6	2	0	0	0	0.024723	1	1693	1693		28.577	0	1	54151	+		46853	21340	32504	32556	52215	52215					0.009613205321102214
LQVCVSVPI	9	Unmodified	_LQVCVSVPI_					0	0	0			REV__ENST00000272233.5_1_2:20647813-20648077:+|nuORF	REV__ENST00000272233.5_1_2:20647813-20648077:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2782897949219	2	479.275521	956.536489	0.24933	0.0001195	4.2906	0.0020564	4.5399	0.0021759	479.2774629464056	96.198	0.75041	96.198	95.821	96.571	0					55	17	4	0	0	0	0.89441	1	12246	12246		32.812	0.85756	1	2024100	+		46854	29811	32505	32557	52216	52216					0.05648186202256511
LQVEAGSSL	9	Unmodified	_LQVEAGSSL_					0	0	0			REV__ENST00000540749.1_1_12:9280913-9281237:+|nuORF	REV__ENST00000540749.1_1_12:9280913-9281237:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2301330566406	2	452.242732	902.470912	0.17449	7.8914E-05	-1.0713	-0.00048447	-0.89676	-0.00040555	452.24250518595045	26.804	0.37721	26.804	26.531	26.908	0					10	8	2	0	0	0	0.014699	1	1415	1415		113.41	0	1	39372	+		46855	34756	32506	32558	52217	52217					0.0157748828091826
LQVEEEVDA	9	Unmodified	_LQVEEEVDA_					0	0	0		ENSG00000067715|ENST00000261205|SYT1	ENSG00000067715|ENST00000261205|SYT1	ENSG00000067715|ENST00000261205|SYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2967529296875	2	516.248212	1030.48187	0.1378	7.1141E-05	1.4671	0.00075739	1.6049	0.00082853	516.248900318909	36.963	0.62153	36.77	36.455	37.076	-0.193					37	15	3	0	0	0	0.022083	1	2921	2921		56.721	0	1	868510			46856	1368	32507	32559	52218	52218					-0.0321515413547786
LQVGQPNL	8	Unmodified	_LQVGQPNL_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7791748046875	2	434.747985	867.481417	-0.39847	-0.00017323	0.81247	0.00035322	0.41401	0.00017999	434.7482131103634	83.456	0.81756	83.456	83.223	84.041	0					29	18	3	0	0	0	0.027866	1	10422	10422		40.573	0	1	778940			46857	8414	32508	32560	52219	52219					0.0423751572599258
LQVHLHQW	8	Unmodified	_LQVHLHQW_					0	0	0			REV__ENST00000538263.5_1_11:61124003-61124198:-|nuORF	REV__ENST00000538263.5_1_11:61124003-61124198:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8193359375	2	530.787976	1059.5614	0.35472	0.00018828	-1.3448	-0.00071383	-0.99013	-0.00052555	530.7872520026276	20.126	0.63508	19.903	19.68	20.315	-0.22344					19	12	2	0	0	0	0.027866	1	475	475		26.796	4.8362	1	48078	+		46858	34664	32509	32561	52220	52220					0.03400002119838064
LQVIKILGTEK	11	Unmodified	_LQVIKILGTEK_					0	0	0		ENST00000486664.5_1_17:41107347-41108531:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	ENST00000486664.5_1_17:41107347-41108531:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3929443359375	2	621.395013	1240.77547	-1.2361	-0.00076809	-2.0241	-0.0012578	-3.2602	-0.0020259	621.3936308468791	103.45	0.61192	103.32	103.09	103.7	-0.12783					38	14	4	0	0	0	1.0923	1	12911	12911		13.454	0	1	482820			46859	10979	32510	32562	52221	52221					0.1647166470522734
LQVLATLHLS	10	Unmodified	_LQVLATLHLS_					0	0	0			REV__nc|ENSG00000133619|A5PL33-3|KRBA1	REV__nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.830810546875	2	547.832049	1093.64954	0.098894	5.4177E-05	-2.6619	-0.0014582	-2.563	-0.0014041	547.8304337297895	18.493	0.49521	18.289	18.113	18.609	-0.20371					19	9	3	0	0	0	1.1286	1	307	307		25.574	1.0549	1	174590	+		46860	23381	32511	32563	52222	52222					0.10646577919806077
LQVLLKFR	8	Unmodified	_LQVLLKFR_					0	0	0		ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3032531738281	2	508.834394	1015.65424	0.033478	1.7035E-05	-3.0684	-0.0015613	-3.0349	-0.0015443	508.83289200331404	26.03	0.12114	26.111	26.01	26.131	0.081293					4	2	2	0	0	0	0.027866	1	1228	1228		12.959	0	1	92330			46861	5548	32512	32564	52223	52223					0.1470350685322046
LQVLNLTQNSL	11	Unmodified	_LQVLNLTQNSL_					0	0	0		nc|ENSG00000144771|Q9HBL6-2|LRTM1;ENSG00000144771|ENST00000273286|LRTM1	nc|ENSG00000144771|Q9HBL6-2|LRTM1	nc|ENSG00000144771|Q9HBL6-2|LRTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.8544921875	2	621.856252	1241.69795	-0.50097	-0.00031153	-1.7648	-0.0010975	-2.2658	-0.001409	621.8550528311765	21.141	0.7734	21.213	20.959	21.732	0.071487					41	15	4	0	0	0	1.0501	1	577	577		28.081	18.376	1	210860			46862	5766	32513	32565	52224	52224					0.08677026769055374
LQVLSDGIF	9	Unmodified	_LQVLSDGIF_					0	0	0			REV__ENSG00000079462|ENST00000262890|PAFAH1B3	REV__ENSG00000079462|ENST00000262890|PAFAH1B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2766418457031	2	496.276575	990.538597	1.112	0.00055186	-1.0013	-0.0004969	0.11074	5.4955E-05	496.27593164611517	85.007	1.08	85.007	84.628	85.708	0					73	25	5	0	0	0	0.35646	1	10673	10673		68.787	0	1	3635600	+		46863	20638	32514	32566	52225	52225					0.04294938211705812
LQVLWEDVSK	10	Unmodified	_LQVLWEDVSK_					0	0	0		ENST00000577538.5_1_18:72347588-72589173:+|nuORF;ENST00000582337.5_1_18:72347588-72515991:+|nuORF	ENST00000577538.5_1_18:72347588-72589173:+|nuORF	ENST00000577538.5_1_18:72347588-72589173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	608.2932739257812	2	608.832246	1215.64994	-0.067992	-4.1396E-05	0.57855	0.00035224	0.51056	0.00031084	608.8324521904884	59.994	0.88799	59.796	59.499	60.387	-0.19742					52	22	4	0	0	0	0.03519	1	6744	6744		7.8045	0	1	1224400			46864	17117	32515	32567	52226	52226					0.05073952848965746
LQVNQQQV	8	Unmodified	_LQVNQQQV_					0	0	0			REV__ENSG00000106304|ENST00000682466|SPAM1	REV__ENSG00000106304|ENST00000682466|SPAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2770080566406	2	478.761623	955.508694	-0.43462	-0.00020808	0.75911	0.00036343	0.3245	0.00015536	478.7617858560994	34.763	0.52896	34.741	34.593	35.122	-0.021763					14	13	2	0	0	0	0.027866	1	2667	2667		33.516	0	1	142850	+		46865	21607	32516	32568	52227	52227					0.029159992663721823
LQVQTALAPQ	10	Unmodified	_LQVQTALAPQ_					0	0	0		ENST00000357508.5_1_1:45190567-45191072:+|nuORF	ENST00000357508.5_1_1:45190567-45191072:+|nuORF	ENST00000357508.5_1_1:45190567-45191072:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7652587890625	2	534.806031	1067.59751	-1.4815	-0.00079233	2.3917	0.0012791	0.91022	0.00048679	534.8067612724266	48.887	0.75646	48.959	48.594	49.351	0.072529					26	20	2	0	0	0	0.03519	1	4963	4963		42.864	5.0528	1	290810			46866	12697	32517	32569	52228	52228					0.06641414506020737
LQVSNHRL	8	Unmodified	_LQVSNHRL_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7803039550781	2	483.777608	965.540663	-0.60425	-0.00029232	1.2859	0.00062211	0.68169	0.00032979	483.7783014314685	29.28	0.98277	29.283	29.014	29.997	0.0031376					69	24	4	0	0	0	0.77775	1	1751	1751		60.972	0.85368	1	10605000	+		46867	36714	32518	32570	52229	52229					0.056514117401775366
LQVTLLTQL	9	Unmodified	_LQVTLLTQL_					0	0	0			REV__OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant	REV__OR4S1|p.M253Cfs*23|1|0.18|ENSG00000176555|chr11:48306973-48306973|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8087158203125	2	514.82115	1027.62775	-0.27479	-0.00014147	1.6757	0.0008627	1.4009	0.00072123	514.8217959829009	67.406	0.28506	67.406	67.205	67.49	0					9	6	2	0	0	0	0.022913	1	8057	8057		88.177	24.643	1	70499	+		46868	27029	32519	32571	52230	52230					0.1150377317121638
LQVVMDQPL	9	Unmodified	_LQVVMDQPL_					0	0	0			REV__nc|ENSG00000171617|O14682-2|ENC1	REV__nc|ENSG00000171617|O14682-2|ENC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3245239257812	2	521.78371	1041.55287	-0.19176	-0.00010006	-1.1766	-0.00061394	-1.3684	-0.000714	521.7821579789102	49.687	0.52498	49.535	49.256	49.781	-0.1512					35	13	4	0	0	0	0.023817	1	5131	5131		71.296	0	1	861890	+		46869	26585	32520	32572	52231	52231					0.03375267368346613
LQWDTLNN	8	Unmodified	_LQWDTLNN_					0	0	0			REV__ENSG00000188386|ENST00000374806|PPP3R2	REV__ENSG00000188386|ENST00000374806|PPP3R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2746276855469	2	502.245806	1002.47706	-0.37463	-0.00018816	-1.3923	-0.00069926	-1.7669	-0.00088742	502.24539245908807	48.554	0.21096	48.621	48.553	48.764	0.066799					7	5	2	0	0	0	0.027866	1	4894	4894		68.787	16.488	1	116840	+		46870	28035	32521	32573	52232	52232					-0.024079934875658182
LQWDTPGLD	9	Unmodified	_LQWDTPGLD_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7686157226562	2	522.753464	1043.49238	-0.79068	-0.00041333	2.7405	0.0014326	1.9498	0.0010193	522.7540209436701	52.343	0.43348	52.224	52.126	52.56	-0.11875					18	10	2	0	0	0	0.024292	1	5447	5447		40.778	5.1599	1	161280	+		46871	22418	32522	32574	52233	52233					-0.027631266903881624
LQWLGSPP	8	Unmodified	_LQWLGSPP_					0	0	0		ENSG00000167791|ENST00000294288|CABP2	ENSG00000167791|ENST00000294288|CABP2	ENSG00000167791|ENST00000294288|CABP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.2743225097656	2	449.245078	896.475603	0.33236	0.00014931	-0.082814	-3.7204E-05	0.24955	0.00011211	449.24477445823743	56.705	0.66508	56.48	56.149	56.814	-0.2248					36	16	3	0	0	0	0.027866	1	6187	6187		63.306	0	1	531550			46872	7738	32523	32575	52234	52234					0.02322417214327288
LQWSPTEN	8	Unmodified	_LQWSPTEN_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2589111328125	2	487.732532	973.45051	-1.2445	-0.00060696	1.299	0.00063355	0.054506	2.6584E-05	487.7329472668863	50.957	0.82959	51.044	50.615	51.445	0.087006					45	22	3	0	0	0	0.027866	1	5366	5366		40.573	0	1	432990			46873	2677	32524	32576	52235	52235					-0.03727682378917052
LQWTNGKV	8	Unmodified	_LQWTNGKV_					0	0	0		ENST00000355673.7_1_12:57922198-57922267:+|nuORF	ENST00000355673.7_1_12:57922198-57922267:+|nuORF	ENST00000355673.7_1_12:57922198-57922267:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.7820129394531	2	473.261259	944.507966	1.6583	0.00078483	-1.6797	-0.00079493	-0.021345	-1.0102E-05	473.26023373655346	23.574	0.98394	23.383	23.034	24.018	-0.19117					50	22	4	0	0	0	0.027866	1	942	942		14.865	0	1	1128400			46874	12651	32525	32577	52236	52236					0.03349204617336454
LQYDGHQP	8	Unmodified	_LQYDGHQP_					0	0	0			REV__ENST00000409035.1_1_19:16630087-16677465:-|nuORF	REV__ENST00000409035.1_1_19:16630087-16677465:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7691955566406	2	479.224874	956.435195	0.026652	1.2772E-05	3.9666	0.0019009	3.9932	0.0019136	479.2262455502	34.884	0.50327	34.884	34.59	35.093	0					28	12	3	0	0	0	0.027866	1	2640	2640		24.203	11.996	1	255190	+		46875	31944	32526	32578	52237	52237					-0.044765491760927034
LQYLEFSPI	9	Unmodified	_LQYLEFSPI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.787353515625	2	555.297507	1108.58046	-0.079381	-4.408E-05	2.3387	0.0012987	2.2593	0.0012546	555.2984251742464	82.111	0.92986	82.001	81.196	82.126	-0.11006					47	22	3	0	0	0	0.024541	1	10224	10224		23.042	1.0826	1	598280			46876	6595	32527	32579	52238	52238					0.030514939002614483
LQYLLLNQQ	9	Unmodified	_LQYLLLNQQ_					0	0	0		ENST00000367478.8_1_1:186324789-186324840:-|nuORF	ENST00000367478.8_1_1:186324789-186324840:-|nuORF	ENST00000367478.8_1_1:186324789-186324840:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.8211669921875	2	566.821681	1131.62881	-0.29364	-0.00016644	-0.47149	-0.00026725	-0.76513	-0.00043369	566.8213404852942	67.924	1.2338	67.924	67.367	68.6	0					87	31	5	0	0	0	0.33245	1	8144	8144		71.296	2.6699	1	4332200			46877	12860	32528	32580	52239	52239					0.06825987540150891
LQYLWFEKYKF	11	Unmodified	_LQYLWFEKYKF_					0	0	0			REV__MLH3|p.E234Wfs*6|1|0.11|ENSG00000119684|chr14:75048949-75048956|CTAAGCTC/-|frameshift_variant	REV__MLH3|p.E234Wfs*6|1|0.11|ENSG00000119684|chr14:75048949-75048956|CTAAGCTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2957153320312	3	522.278139	1563.81259	-0.98727	-0.00051563	0.45093	0.00023551	-0.53634	-0.00028012	522.6119201765993	33.735	0.32896	33.735	33.487	33.816	0					10	8	2	0	0	0	0.02484	1	2469	2469		12.433	0	1	60868	+		46878	36382	32529	32581	52240	52240					0.05323336250967259
LQYMYLKV	8	Unmodified	_LQYMYLKV_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2952880859375	2	529.291171	1056.56779	-0.96841	-0.00051257	1.0287	0.00054447	0.060262	3.1896E-05	529.2890655937135	56.636	0.46959	56.472	56.275	56.745	-0.16431					39	12	5	0	0	0	0.027866	1	6263	6263		31.955	0	1	2594800	+		46879	20702	32530	32582	52241	52241					0.041767592363612494
LQYMYLKV	8	Unmodified	_LQYMYLKV_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.291171	1056.56779	-0.91896	-0.0004864	1.5966	0.00084506	0.67762	0.00035866	529.2890141824415	56.506	0.4639	56.506	56.314	56.778	0	0.08045	0.0083427	NaN	31.955	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2550300	+		46880	20702	32530	32582							0.041767592363612494
LQYMYLKV	8	Unmodified	_LQYMYLKV_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.291171	1056.56779	-0.56587	-0.00029951	-0.82785	-0.00043817	-1.3937	-0.00073768	529.289179246168	56.28	0.44072	56.378	56.246	56.686	0.097893	-0.047275	0.0057763	NaN	31.955	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3250500	+		46881	20702	32530	32582							0.041767592363612494
LQYMYLKV	8	Unmodified	_LQYMYLKV_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.291171	1056.56779	-0.34908	-0.00018476	-6.5562	-0.0034701	-6.9053	-0.0036549	529.2875418572232	56.551	0.51284	56.383	56.124	56.637	-0.1672	-0.041967	-0.00028769	NaN	31.955	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	643520	+		46882	20702	32530	32582							0.041767592363612494
LQYMYLKV	8	Unmodified	_LQYMYLKV_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.291171	1056.56779	-0.094716	-5.0133E-05	-6.6053	-0.0034961	-6.7001	-0.0035463	529.2874549129551	56.604	0.57948	56.401	56.092	56.672	-0.20209	-0.02388	-0.00033969	NaN	31.955	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688170	+		46883	20702	32530	32582							0.041767592363612494
LQYMYLKV	8	Unmodified	_LQYMYLKV_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.291171	1056.56779	0.28434	0.0001505	-7.7712	-0.0041132	-7.4869	-0.0039627	529.2872500576968	56.636	0.47198	56.411	56.189	56.661	-0.2248	-0.013966	-0.0015739	NaN	31.955	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	808060	+		46884	20702	32530	32582							0.041767592363612494
LQYPHPRRRYL	11	Unmodified	_LQYPHPRRRYL_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.76422119140625	3	500.28451	1497.8317	0.51714	0.00025872	2.8407	0.0014211	3.3578	0.0016799	500.2856017794696	43.162	0.32938	43.193	43.01	43.34	0.030823					17	8	3	0	0	0	0.024873	1	3944	3944		6.001	0.30226	1	103740			46885	1788	32531	32583	52242	52242					0.10269730385266485
LQYPHPRRRYL	11	Unmodified	_LQYPHPRRRYL_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	500.28451	1497.8317	-0.40061	-0.00020042	2.8642	0.0014329	2.4636	0.0012325	500.2853272389854	43.262	0.29044	43.123	42.956	43.247	-0.13929	0.003046	-0.0005654	NaN	9.2118	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127800			46886	1788	32531	32583							0.10269730385266485
LQYQSTVA	8	Unmodified	_LQYQSTVA_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.2366027832031	2	455.23745	908.460347	0.42051	0.00019143	-1.0199	-0.00046428	-0.59936	-0.00027285	455.23689333793243	102.86	0.63401	102.86	102.59	103.23	-0.0046005					36	15	3	0	0	0	1.043	1	13112	13112		30.504	1.3541	1	1402500			46887	4819	32532	32584	52243	52243					0.002455056264693667
LQYQSTVA	8	Unmodified	_LQYQSTVA_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2369689941406	2	455.23745	908.460347	-0.11418	-5.198E-05	-0.53038	-0.00024145	-0.64456	-0.00029343	455.23709140982135	102.93	0.71021	102.8	102.54	103.25	-0.12783					37	16	3	0	0	0	1.043	1	12805	12805		30.504	0	1	2037700			46888	4819	32532	32584	52244	52244					0.002455056264693667
LQYSFRVT	8	Unmodified	_LQYSFRVT_					0	0	0			REV__ENST00000428621.5_1_2:55407836-55408762:-|nuORF	REV__ENST00000428621.5_1_2:55407836-55408762:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.31951904296875	2	507.274367	1012.53418	-0.41404	-0.00021003	1.3214	0.0006703	0.90734	0.00046027	507.2748721935699	53.244	1.245	53.34	52.83	54.075	0.095665					53	34	2	0	0	0	0.027866	1	5634	5634		10.265	0	1	594320	+		46889	32323	32533	32585	52245	52245					0.02841473788816984
LQYSVEVQV	9	Unmodified	_LQYSVEVQV_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.78564453125	2	532.784764	1063.55498	-1.0541	-0.00056163	0.12255	6.5291E-05	-0.9316	-0.00049634	532.7855429724899	45.748	3.1551	45.596	45.244	48.399	-0.15157					218	90	6	0	0	0	0.15388	1	4655	4655		98.582	4.9844	1	381720000			46890	6023	32534	32586	52246	52246					0.025740193778119647
LRAAEEQL	8	Unmodified	_LRAAEEQL_					0	0	0			REV__ENSG00000088899|ENST00000337576|LZTS3;REV__ENSG00000179562|ENST00000321407|GCC1	REV__ENSG00000088899|ENST00000337576|LZTS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.25689697265625	2	465.256174	928.497795	1.3734	0.000639	-1.4759	-0.00068665	-0.10242	-4.7653E-05	465.2555335000608	59.394	0.80378	59.194	58.923	59.727	-0.20016					81	21	5	0	0	0	0.59392	1	6737	6737		76.847	0.072494	1	14947000	+		46891	20829;27275	32535	32587	52247	52247					0.03068596892092046
LRAAPELAP	9	Unmodified	_LRAAPELAP_					0	0	0		nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2	nc|ENSG00000182240|Q9Y5Z0-3|BACE2	nc|ENSG00000182240|Q9Y5Z0-3|BACE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.724853515625	2	469.276909	936.539266	0.2161	0.00010141	-0.68088	-0.00031952	-0.46477	-0.00021811	469.27664413688166	47.617	1.1583	47.464	46.899	48.057	-0.15301					83	33	4	0	0	0	0.023817	1	4679	4679		34.173	0	1	1868600			46892	9116	32536	32588	52248	52248					0.0684577765140375
LRAAPRAPEP	10	Unmodified	_LRAAPRAPEP_					0	0	0			REV__ENST00000264694.12_1_4:186131276-186168470:+|nuORF	REV__ENST00000264694.12_1_4:186131276-186168470:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2946166992188	2	539.311815	1076.60908	-1.6189	-0.00087311	-0.17351	-9.3576E-05	-1.7924	-0.00096669	539.3122140327308	80.809	0.23296	80.833	80.696	80.929	0.023911					6	5	2	0	0	0	0.03519	1	9961	9961		58.782	14.665	1	39021	+		46893	29728	32537	32589	52249	52249					0.07383656320030241
LRAARAEEP	9	Unmodified	_LRAARAEEP_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7784729003906	2	506.780348	1011.54614	-0.020235	-1.0255E-05	-3.2649	-0.0016546	-3.2851	-0.0016648	506.778561137882	98.7	1.3456	98.7	98.233	99.578	0					62	30	3	0	0	0	0.59099	1	12630	12630		53.351	0.41475	1	375090			46894	5422	32538	32590	52250	52250					0.04083090531992184
LRAAVEHTIG	10	Unmodified	_LRAAVEHTIG_					0	0	0		ENST00000561903.6_1_16:1826945-1828699:+|nuORF;ENST00000570069.5_1_16:1826945-1827407:+|nuORF	ENST00000561903.6_1_16:1826945-1828699:+|nuORF	ENST00000561903.6_1_16:1826945-1828699:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8040161132812	2	533.803823	1065.59309	-0.85138	-0.00045447	0.33026	0.0001763	-0.52112	-0.00027817	533.8040315812436	34.39	1.2023	34.39	33.816	35.018	0					88	30	5	0	0	0	0.79525	1	2583	2583		60.972	15.02	1	7162400			46895	16837	32539	32591	52251	52251					0.06291950083118536
LRADHSSL	8	Unmodified	_LRADHSSL_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.74078369140625	2	449.740691	897.466829	-0.88526	-0.00039814	0.97463	0.00043833	0.089377	4.0196E-05	449.74102511164796	30.615	0.7449	30.615	30.258	31.003	0					34	17	3	0	0	0	0.35998	1	1981	1981		102.77	5.3007	1	1712300	+		46896	37200	32540	32592	52252	52252					0.013994435778499792
LRADHSSL	8	Unmodified	_LRADHSSL_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.74078369140625	2	449.740691	897.466829	-0.27002	-0.00012144	0.39576	0.00017799	0.12575	5.6553E-05	449.7407696479239	30.594	1.1138	30.603	29.797	30.911	0.0086708					37	26	2	0	0	0	0.44658	1	1959	1959		90.777	19.481	1	1738200	+		46897	37200	32540	32592	52253	52253					0.013994435778499792
LRADHSSL	8	Unmodified	_LRADHSSL_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.74078369140625	2	449.740691	897.466829	-0.79697	-0.00035843	0.90143	0.00040541	0.10447	4.6984E-05	449.740993588599	30.243	0.74586	30.317	29.962	30.708	0.074314					37	17	3	0	0	0	0.42327	2	1867	1867;1880		94.006	25.522	1	2036400	+		46898	37200	32540	32592	52254;52255	52254					0.013994435778499792
LRADHSSL	8	Unmodified	_LRADHSSL_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	449.740691	897.466829	-0.88526	-0.00039814	0.97463	0.00043833	0.089377	4.0196E-05	449.74102511164796	30.615	0.7449	30.615	30.258	31.003	0	0.10368	0.000208	NaN	102.77	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1712300	+		46899	37200	32540	32592							0.013994435778499792
LRADHSSL	8	Unmodified	_LRADHSSL_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	449.740691	897.466829	-0.27002	-0.00012144	0.39576	0.00017799	0.12575	5.6553E-05	449.7407696479239	30.594	1.1138	30.603	29.797	30.911	0.0086708	0.09106	-0.00031268	NaN	102.77	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1738200	+		46900	37200	32540	32592							0.013994435778499792
LRADHSSL	8	Unmodified	_LRADHSSL_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	449.740691	897.466829	-0.79697	-0.00035843	0.90143	0.00040541	0.10447	4.6984E-05	449.740993588599	30.243	0.74586	30.317	29.962	30.708	0.074314	-0.19474	0.00014216	NaN	102.77	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2036400	+		46901	37200	32540	32592							0.013994435778499792
LRAEAERLG	9	Unmodified	_LRAEAERLG_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.806396484375	2	507.788173	1013.56179	-0.11558	-5.8692E-05	0.098426	4.9979E-05	-0.017158	-8.7126E-06	507.78833190830795	34.271	0.50429	34.266	33.948	34.452	-0.0045624					19	12	2	0	0	0	0.023454	1	2552	2552		71.877	5.4482	1	157500			46902	5130	32541	32593	52256	52256					0.05555377049040544
LRAFKVPT	8	Unmodified	_LRAFKVPT_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.2901916503906	2	466.28982	930.565087	0.0033406	1.5577E-06	0.11363	5.2982E-05	0.11697	5.454E-05	466.28971571984397	67.511	0.83624	67.223	66.911	67.748	-0.28834					52	20	4	0	0	0	0.93274	1	8031	8031		47.916	1.9636	1	1282700	+		46903	20986	32542	32594	52257	52257					0.09702671893705883
LRAFKVPT	8	Unmodified	_LRAFKVPT_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	466.28982	930.565087	-0.35953	-0.00016765	0.639	0.00029796	0.27947	0.00013031	466.2899778948486	67.147	0.87184	67.147	66.883	67.755	0	-0.07266	0.00053523	NaN	47.916	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525600	+		46904	20986	32542	32594							0.09702671893705883
LRAFKVPT	8	Unmodified	_LRAFKVPT_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	466.28982	930.565087	0.0033406	1.5577E-06	0.11363	5.2982E-05	0.11697	5.454E-05	466.28971571984397	67.511	0.83624	67.223	66.911	67.748	-0.28834	0.0030054	4.5279E-05	NaN	47.916	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1282700	+		46905	20986	32542	32594							0.09702671893705883
LRAFKVPT	8	Unmodified	_LRAFKVPT_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.28982	930.565087	0.76065	0.00035468	-0.5148	-0.00024005	0.24585	0.00011464	466.2894525158544	67.265	0.83892	67.289	66.985	67.824	0.023911	0.069654	-0.00054078	NaN	47.916	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1356400	+		46906	20986	32542	32594							0.09702671893705883
LRAGGGGGSA	10	Unmodified	_LRAGGGGGSA_					0	0	0			REV__ENST00000475022.1_1_19:7970918-7971056:+|nuORF	REV__ENST00000475022.1_1_19:7970918-7971056:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5514831542969	2	401.711934	801.409314	0.78343	0.00031471	3.0942	0.001243	3.8776	0.0015577	401.71178170726245	23.629	0.89775	23.449	22.883	23.78	-0.17989					32	20	2	0	0	0	0.03519	1	905	905		13.454	0.49486	1	258650	+		46907	33283	32543	32595	52258	52258					0.0006660137229346219
LRAGLPSH	8	Unmodified	_LRAGLPSH_					0	0	0		nc|ENSG00000116783|Q59H18-3|TNNI3K;ENSG00000116783|ENST00000326637|TNNI3K;nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K	nc|ENSG00000116783|Q59H18-3|TNNI3K	nc|ENSG00000116783|Q59H18-3|TNNI3K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.77490234375	2	425.748319	849.482085	0.13693	5.8299E-05	-1.6424	-0.00069925	-1.5055	-0.00064095	425.7475554843935	42.211	0.30424	41.981	41.797	42.101	-0.23029					14	8	2	0	0	0	0.027866	1	3765	3765		16.473	0	1	171080			46908	3576	32544	32596	52259	52259					0.05132355165710578
LRAGPERA	8	Unmodified	_LRAGPERA_					0	0	0		chr11:69703364-69703645|123|53.27|0.22|7.93|-|1|FGF19,FGF19|1	chr11:69703364-69703645|123|53.27|0.22|7.93|-|1|FGF19,FGF19|1	chr11:69703364-69703645|123|53.27|0.22|7.93|-|1|FGF19,FGF19|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7785339355469	2	435.251226	868.487899	-0.20706	-9.0122E-05	0.49144	0.0002139	0.28438	0.00012378	435.25143224740094	81.825	2.5202	81.683	80.858	83.379	-0.14249					124	58	3	0	0	0	0.027866	1	10039	10039		47.916	0	1	414850			46909	312	32545	32597	52260	52260					0.04839453677379879
LRAIGMHEG	9	Unmodified	_LRAIGMHEG_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27301025390625	2	492.258194	982.501834	-0.70829	-0.00034866	-2.0909	-0.0010293	-2.7992	-0.0013779	492.2575646465988	23.683	0.46578	23.622	23.347	23.813	-0.060862					13	10	2	0	0	0	0.024209	1	937	937		56.721	8.8055	1	67883	+		46910	37200	32546	32598	52261	52261					0.009883631141633487
LRAILTQQT	9	Unmodified	_LRAILTQQT_					0	0	0		ENST00000460477.1_1_7:45956706-45960430:-|nuORF	ENST00000460477.1_1_7:45956706-45960430:-|nuORF	ENST00000460477.1_1_7:45956706-45960430:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.8123168945312	2	522.314023	1042.61349	1.0262	0.00053599	-1.5684	-0.00081919	-0.5422	-0.0002832	522.3130247237265	22.845	0.55586	22.646	22.425	22.98	-0.19889					19	11	3	0	0	0	0.024523	1	859	859		10.265	0	1	96112			46911	14657	32547	32599	52262	52262					0.0938912074293512
LRAKGTMAER	10	Unmodified	_LRAKGTMAER_					0	0	0		nc|ENSG00000130821|P48029-2|SLC6A8;ENST00000485324.1_1_X:152959908-152960666:+|nuORF;nc|ENSG00000130821|P48029-3|SLC6A8;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8355712890625	2	566.816407	1131.61826	0.39357	0.00022308	-1.1427	-0.00064768	-0.7491	-0.0004246	566.8156977005914	22.094	0.51856	21.905	21.628	22.147	-0.18894					19	10	3	0	0	0	0.03519	1	724	724		40.778	9.2484	1	34265			46912	18269	32548	32600	52263	52263					0.05771681614078261
LRALAALLL	9	Unmodified	_LRALAALLL_					0	0	0			REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	REV__ENST00000581411.6_3_17:27895776-27895854:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.32891845703125	2	477.328945	952.643337	0.56814	0.00027119	-0.40108	-0.00019145	0.16706	7.9743E-05	477.3286412961257	78.544	2.5418	78.352	78.016	80.558	-0.1921					152	60	3	0	0	0	0.67308	1	9677	9677		47.916	3.3845	1	3530800	+		46913	26153	32549	32601	52264	52264					0.16512104478943002
LRALHLNF	8	Unmodified	_LRALHLNF_					0	0	0			REV__POLR3E|p.S591R|1|0.14|ENSG00000058600|chr16:22326185-22326185|C/G|missense_variant	REV__POLR3E|p.S591R|1|0.14|ENSG00000058600|chr16:22326185-22326185|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27301025390625	2	492.292894	982.571235	-0.72347	-0.00035616	-1.4266	-0.0007023	-2.1501	-0.0010585	492.29333369138857	23.67	0.42627	23.609	23.386	23.813	-0.060862					12	9	2	0	0	0	0.027866	1	937	937		50.025	9.2464	1	53508	+		46914	37390	32550	32602	52265	52265					0.07925190125229165
LRALYYSL	8	Unmodified	_LRALYYSL_					0	0	0			REV__ENSG00000179431|ENST00000317811|FJX1	REV__ENSG00000179431|ENST00000317811|FJX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7666931152344	2	499.78711	997.559667	0.3444	0.00017213	2.1949	0.001097	2.5393	0.0012691	500.2878196027279	41.776	0.59344	41.776	41.36	41.954	0					22	16	2	0	0	0	0.027866	1	3777	3777		94.006	17.16	1	116820	+		46915	27267	32551	32603	52266	52266					0.06078948311221666
LRAMLQLRG	9	Unmodified	_LRAMLQLRG_					0	0	0			REV__nc|ENSG00000131051|Q14498-2|RBM39	REV__nc|ENSG00000131051|Q14498-2|RBM39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2881469726562	2	529.318586	1056.62262	-0.88309	-0.00046744	-0.22034	-0.00011663	-1.1034	-0.00058407	529.3177638747105	45.64	0.64415	45.489	45.112	45.756	-0.15156					49	18	4	0	0	0	0.024263	1	4433	4433		71.296	2.5089	1	1838500	+		46916	36654	32552	32604	52267	52267					0.09657190827647355
LRAMLQLRG	9	Unmodified	_LRAMLQLRG_					0	0	0			REV__nc|ENSG00000131051|Q14498-2|RBM39	REV__nc|ENSG00000131051|Q14498-2|RBM39	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.318586	1056.62262	-0.49943	-0.00026436	4.1727	0.0022087	3.6733	0.0019443	529.8238408942141	45.724	0.63409	45.464	45.183	45.817	-0.25974	-0.041544	0.0040152	NaN	71.296	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446300	+		46917	36654	32552	32604							0.09657190827647355
LRAMRGPAR	9	Unmodified	_LRAMRGPAR_					0	0	0			REV__nc|ENSG00000286025|P0DSO1|FAM246C	REV__nc|ENSG00000286025|P0DSO1|FAM246C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7907104492188	2	514.300727	1026.5869	-0.54504	-0.00028031	-3.7097	-0.0019079	-4.2547	-0.0021882	514.2985744620586	40.988	0.66715	41.011	40.797	41.464	0.023006					23	18	2	0	0	0	0.024323	1	3662	3662		35.618	12.096	1	137340	+		46918	37219	32553	32605	52268	52268					0.0746715337063506
LRAMRGPAR	9	Unmodified	_LRAMRGPAR_					0	0	0			REV__nc|ENSG00000286025|P0DSO1|FAM246C	REV__nc|ENSG00000286025|P0DSO1|FAM246C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.300727	1026.5869	-0.099797	-5.1326E-05	-3.9461	-0.0020295	-4.0459	-0.0020808	514.2984062346155	40.901	0.46074	40.901	40.692	41.153	0	-0.037751	0.00022078	NaN	35.618	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172330	+		46919	37219	32553	32605							0.0746715337063506
LRAMRGPAR	9	Unmodified	_LRAMRGPAR_					0	0	0			REV__nc|ENSG00000286025|P0DSO1|FAM246C	REV__nc|ENSG00000286025|P0DSO1|FAM246C	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.300727	1026.5869	0.49442	0.00025428	-4.8862	-0.002513	-4.3918	-0.0022587	514.2979667296311	41.028	0.50146	40.905	40.584	41.086	-0.12318	-0.033879	-0.00074626	NaN	35.618	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164250	+		46920	37219	32553	32605							0.0746715337063506
LRAPALLPLL	10	Unmodified	_LRAPALLPLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.863037109375	2	538.863152	1075.71175	-1.4683	-0.00079121	0.99899	0.00053832	-0.46931	-0.00025289	538.86364145605	80.432	2.1604	80.281	79.924	82.085	-0.15168					146	52	5	0	0	0	0.47726	1	9946	9946		90.777	0	1	8480100			46921	18772	32554	32606	52269	52269					0.17692349058802392
LRARGGRR	8	Unmodified	_LRARGGRR_					0	0	0		ENST00000263208.5_1_22:19398282-19419255:-|nuORF	ENST00000263208.5_1_22:19398282-19419255:-|nuORF	ENST00000263208.5_1_22:19398282-19419255:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2876281738281	2	471.296833	940.579114	-0.33146	-0.00015622	-4.152	-0.0019568	-4.4834	-0.002113	471.2941166082324	93.843	0.47712	93.695	93.566	94.043	-0.14771					12	10	2	0	0	0	0.027866	1	11576	11576		12.207	0	1	19281			46922	11524	32555	32607	52270	52270					0.10644762165372867
LRARGLEV	8	Unmodified	_LRARGLEV_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.28240966796875	2	457.282526	912.550499	-0.29121	-0.00013316	-0.31657	-0.00014476	-0.60778	-0.00027793	457.28237025203055	34.61	1.2279	34.605	34.298	35.526	-0.0045624					65	31	4	0	0	0	1.0574	1	2575	2575		27.882	1.0861	1	8202400			46923	1941	32556	32608	52271	52271					0.09072599745559273
LRASAPSLSV	10	Unmodified	_LRASAPSLSV_					0	0	0			REV__ENST00000402527.5_1_22:39714502-39715605:-|nuORF	REV__ENST00000402527.5_1_22:39714502-39715605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.74560546875	2	500.792924	999.571294	-0.358	-0.00017929	-0.069901	-3.5006E-05	-0.4279	-0.00021429	500.7928381422234	52.854	0.52251	52.664	52.308	52.831	-0.18982					23	12	2	0	0	0	0.03519	1	5524	5524		104.06	29.802	1	3844400	+		46924	31871	32557	32609	52272	52272					0.07149145334574314
LRASFTITK	9	Unmodified	_LRASFTITK_					0	0	0		ENST00000339364.9_1_10:98355082-98355196:-|nuORF	ENST00000339364.9_1_10:98355082-98355196:-|nuORF	ENST00000339364.9_1_10:98355082-98355196:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7926025390625	2	518.811116	1035.60768	0.5343	0.0002772	3.5347	0.0018338	4.069	0.002111	518.813949460059	51.503	0.18633	51.39	51.287	51.473	-0.11329					6	4	2	0	0	0	0.024477	1	5284	5284		35.618	17.294	1	151260			46925	12456	32558	32610	52273	52273					0.09130022231261137
LRASLGTK	8	Unmodified	_LRASLGTK_					0	0	0			REV__nc|ENSG00000115825|O94806-2|PRKD3	REV__nc|ENSG00000115825|O94806-2|PRKD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5549011230469	2	423.263802	844.513051	0.070218	2.9721E-05	-0.056023	-2.3712E-05	0.014196	6.0086E-06	423.2636558386958	24.403	0.64029	24.188	23.909	24.55	-0.21511					29	14	3	0	0	0	0.027866	1	1042	1042		14.865	0	1	460330	+		46926	22232	32559	32611	52274	52274					0.08457508479955322
LRASLRDLRS	10	Unmodified	_LRASLRDLRS_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8015747070312	2	593.854378	1185.6942	-0.59224	-0.0003517	1.04	0.00061761	0.44777	0.00026591	593.8562892357838	36.111	0.3533	35.895	35.812	36.165	-0.21661					10	9	2	0	0	0	0.03519	1	2842	2842		37.812	3.639	1	82078			46927	2721	32560	32612	52275	52275					0.10878401785817005
LRASTPNKA	9	Unmodified	_LRASTPNKA_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27764892578125	2	479.277441	956.540328	-0.050895	-2.4393E-05	0.92199	0.00044189	0.87109	0.0004175	479.2776228774827	96.341	2.321	96.184	95.4	97.721	-0.15646					118	52	5	0	0	0	0.76818	1	11907	11907		41.427	5.8083	1	1642300	+		46928	28058	32561	32613	52276	52276					0.060319920203255606
LRATDAGL	8	Unmodified	_LRATDAGL_					0	0	0			REV__ENST00000534464.1_2_11:10327229-10327346:+|nuORF	REV__ENST00000534464.1_2_11:10327229-10327346:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	408.7322082519531	2	408.732335	815.450116	0.11997	4.9035E-05	-0.21758	-8.8932E-05	-0.09761	-3.9897E-05	408.73223273858844	31.068	0.874	31.068	30.717	31.591	0					53	20	3	0	0	0	0.845	1	2025	2025		55.504	4.1688	1	6170500	+		46929	24646	32562	32614	52277	52277					0.03500942691914588
LRATNQISP	9	Unmodified	_LRATNQISP_					0	0	0		ENSG00000074582|ENST00000359273|BCS1L;ENST00000460579.5_1_2:219527197-219528106:+|nuORF	ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.28326416015625	2	500.282723	998.550893	-1.0612	-0.00053088	0.19566	9.7884E-05	-0.8655	-0.00043299	500.2826945212731	37.669	0.82634	37.587	37.323	38.15	-0.082016					59	23	4	0	0	0	0.6504	1	3089	3089		49.442	0	1	2971800			46930	1530	32563	32615	52278	52278					0.051559746747557256
LRAVELPE	8	Unmodified	_LRAVELPE_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.29730224609375	2	463.768917	925.523281	-0.20606	-9.5563E-05	3.0023	0.0013924	2.7962	0.0012968	463.77093128864425	65.622	0.57972	65.38	65.085	65.665	-0.24145					27	13	3	0	0	0	0.027866	1	7479	7479		56.721	5.3856	1	431390			46931	2071	32564	32616	52279	52279					0.05754071414514783
LRAWITLS	8	Unmodified	_LRAWITLS_					0	0	0			REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.28936767578125	2	480.287277	958.560001	0.10248	4.922E-05	0.98198	0.00047163	1.0845	0.00052085	480.2880112423214	66.129	0.69138	65.856	65.568	66.26	-0.27282					54	17	4	0	0	0	0.94517	1	7849	7849		45.952	1.8352	1	7446300	+		46932	31194	32565	32617	52280	52280					0.07906368031081001
LRAYGESL	8	Unmodified	_LRAYGESL_					0	0	0			REV__ENSG00000235106|ENST00000603928|BRD3OS	REV__ENSG00000235106|ENST00000603928|BRD3OS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7455749511719	2	454.745442	907.476331	0.30251	0.00013757	-0.091712	-4.1705E-05	0.2108	9.586E-05	454.74531484085605	53.856	1.2105	53.954	53.558	54.769	0.097736					84	34	4	0	0	0	0.59392	1	5780	5780		76.847	0	1	3227100	+		46933	28922	32566	32618	52281	52281					0.018892118633857535
LRAYSGSTV	9	Unmodified	_LRAYSGSTV_					0	0	0		ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	ENSG00000139438|ENST00000538780|FAM222A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2380065917969	2	477.256174	952.497795	0.073895	3.5267E-05	0.49585	0.00023665	0.56974	0.00027191	477.2564741787357	31.657	0.27822	31.669	31.545	31.823	0.011797					8	6	2	0	0	0	0.016006	1	2131	2131		134.81	19.352	1	35666			46934	5336	32567	32619	52282	52282					0.01964596892105419
LRCHLHLD	8	Unmodified	_LRCHLHLD_					0	0	0		ENST00000390547.3_3_14:106174264-106174703:-|nuORF	ENST00000390547.3_3_14:106174264-106174703:-|nuORF	ENST00000390547.3_3_14:106174264-106174703:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2773742675781	2	503.766186	1005.51782	-0.38674	-0.00019482	-0.69305	-0.00034914	-1.0798	-0.00054396	503.76586279159443	31.256	0.78323	31.268	30.999	31.782	0.011797					48	18	3	0	0	0	0.027866	1	2024	2024		33.516	1.5607	1	1377100			46935	13388	32568	32620	52283	52283					0.015280693510590027
LRCPQMESM	9	Unmodified	_LRCPQMESM_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2893676757812	2	547.743205	1093.47186	-0.051779	-2.8362E-05	-0.25682	-0.00014067	-0.3086	-0.00016903	547.7429891050662	57.722	0.96161	57.532	56.867	57.829	-0.19017					62	25	4	0	0	0	0.024354	1	6252	6252		16.473	0	1	1267900			46936	7494	32569	32621	52284	52284					-0.07114079937718998
LRCSPFLK	8	Unmodified	_LRCSPFLK_					0	0	0		ENST00000533404.1_1_11:44088841-44089340:+|nuORF	ENST00000533404.1_1_11:44088841-44089340:+|nuORF	ENST00000533404.1_1_11:44088841-44089340:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2771301269531	2	482.275855	962.537157	0.073643	3.5516E-05	2.0724	0.00099947	2.146	0.001035	482.2768318904873	24.587	0.88838	24.666	24.364	25.253	0.078344					44	19	4	0	0	0	0.6536	1	1042	1042		71.296	2.5089	1	1460200			46937	16315	32570	32622	52285	52285					0.054390256419537764
LRCSRRTLL	9	Unmodified	_LRCSRRTLL_					0	0	0		ENST00000396225.1_1_4:68449323-68449362:+|nuORF	ENST00000396225.1_1_4:68449323-68449362:+|nuORF	ENST00000396225.1_1_4:68449323-68449362:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.321533203125	2	559.334767	1116.65498	0.62091	0.0003473	-0.33312	-0.00018633	0.28779	0.00016097	559.3342175874619	72.476	0.4045	72.485	72.331	72.736	0.0097733					12	9	2	0	0	0	0.022832	1	8728	8728		104.75	5.3716	1	112120			46938	13547	32571	32623	52286	52286					0.10131978230629102
LRDALPELLGL	11	Unmodified	_LRDALPELLGL_					0	0	0		ENST00000443486.1_1_21:15165183-15165459:+|nuORF;ENST00000584979.1_1_18:14361435-14361894:-|nuORF;ENST00000479127.5_1_21:46378257-46396715:+|nuORF;nc|ENSG00000160256|Q9NSI2-2|SLX9;ENSG00000160256|ENST00000291634|SLX9	ENST00000443486.1_1_21:15165183-15165459:+|nuORF	ENST00000443486.1_1_21:15165183-15165459:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.3590087890625	2	605.363713	1208.71287	-0.64469	-0.00039027	-2.6911	-0.0016291	-3.3358	-0.0020194	605.3615888791153	106.88	0.46687	106.75	106.45	106.91	-0.1238					19	15	2	0	0	0	0.99553	1	13292	13292		37.812	1.3648	1	134720			46939	6798	32572	32624	52287	52287					0.11686518637020527
LRDDQPFLI	9	Unmodified	_LRDDQPFLI_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8035278320312	2	558.806031	1115.59751	-0.4384	-0.00024498	-3.81	-0.002129	-4.2484	-0.002374	558.8038714821063	49.007	1.0114	48.825	48.408	49.419	-0.18206					76	26	5	0	0	0	0.56934	1	4906	4906		54.776	3.5836	1	7281600			46940	1711	32573	32625	52288	52288					0.04433414506047484
LRDFLQRHRAR	11	Unmodified	_LRDFLQRHRAR_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2587890625	3	489.951642	1466.8331	0.040932	2.0055E-05	0.44975	0.00022035	0.49068	0.00024041	490.2859236300947	69.454	0.67254	69.454	69.202	69.874	0					22	16	2	0	0	0	0.024879	1	8420	8420		8.7993	0	1	379720			46941	2700	32574	32626	52289	52289					0.11835364473995469
LRDGVGALLI	10	Unmodified	_LRDGVGALLI_					0	0	0			REV__ENSG00000182450|ENST00000422670|KCNK4	REV__ENSG00000182450|ENST00000422670|KCNK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8182983398438	2	513.818941	1025.62333	0.6499	0.00033393	-1.5547	-0.00079884	-0.90481	-0.00046491	513.8181162382319	72.563	1.6458	72.282	71.882	73.528	-0.28124					108	39	4	0	0	0	0.71272	1	8803	8803		66.429	4.3219	1	21118000	+		46942	27476	32575	32627	52290	52290					0.11154308748336916
LRDKLDQL	8	Unmodified	_LRDKLDQL_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7929992675781	2	500.792924	999.571294	0.014314	7.1682E-06	-0.28256	-0.0001415	-0.26825	-0.00013434	500.79269802473954	51.856	0.88568	51.737	51.357	52.243	-0.11875					87	23	6	0	0	0	0.53593	1	5363	5363		82.241	2.7895	1	10550000	+		46943	23682	32576	32628	52291	52291					0.07149145334562945
LRDKLDQL	8	Unmodified	_LRDKLDQL_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.79327392578125	2	500.792924	999.571294	-2.1727	-0.0010881	1.3672	0.00068466	-0.80553	-0.00040341	500.7936378130004	52.12	0.76794	51.851	51.548	52.316	-0.26903					50	20	3	0	0	0	0.64735	1	5369	5369		71.877	3.0906	1	11260000	+		46944	23682	32576	32628	52292	52292					0.07149145334562945
LRDKLDQL	8	Unmodified	_LRDKLDQL_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6|ODF2	REV__nc|ENSG00000136811|Q5BJF6|ODF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.79302978515625	2	500.792924	999.571294	0.02379	1.1914E-05	-0.68184	-0.00034146	-0.65805	-0.00032955	500.7924977441126	51.965	1.056	51.781	51.258	52.314	-0.18404					99	27	7	0	0	0	0.53593	2	5368	5356;5368		82.241	10.945	1	10537000	+		46945	23682	32576	32628	52293;52294	52294					0.07149145334562945
LRDLDRVPS	9	Unmodified	_LRDLDRVPS_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2843017578125	2	535.80128	1069.58801	-2.2188	-0.0011888	1.0038	0.00053785	-1.215	-0.00065099	535.8016968033503	38.333	0.93717	38.36	38.023	38.96	0.027275					47	25	2	0	0	0	0.024456	1	3132	3132		51.193	28.15	1	901470	+		46946	28437	32577	32629	52295	52295					0.05599646220525756
LRDLDRVPS	9	Unmodified	_LRDLDRVPS_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.80128	1069.58801	-1.4734	-0.00078945	0.90049	0.00048249	-0.57291	-0.00030697	535.8017237413768	38.228	0.70302	38.228	38.199	38.902	0	0.0060858	8.7896E-05	NaN	75.043	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989560	+		46947	28437	32577	32629							0.05599646220525756
LRDLSAAR	8	Unmodified	_LRDLSAAR_					0	0	0			REV__ENSG00000169330|ENST00000305428|MINAR1	REV__ENSG00000169330|ENST00000305428|MINAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2642517089844	2	451.264333	900.514114	-0.053259	-2.4034E-05	-0.24006	-0.00010833	-0.29332	-0.00013237	451.26416793174377	33.116	0.67712	32.916	32.609	33.286	-0.20019					49	16	4	0	0	0	0.95679	1	2337	2337		44.117	8.9161	1	5445200	+		46948	26355	32578	32630	52296	52296					0.059877228488517176
LRDLSAAR	8	Unmodified	_LRDLSAAR_					0	0	0			REV__ENSG00000169330|ENST00000305428|MINAR1	REV__ENSG00000169330|ENST00000305428|MINAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2646484375	2	451.264333	900.514114	-0.58808	-0.00026538	0.27637	0.00012472	-0.3117	-0.00014066	451.26440910325346	33.013	0.7205	32.847	32.516	33.236	-0.16565					50	17	4	0	0	0	0.94517	1	2315	2315		45.952	5.3793	1	5149700	+		46949	26355	32578	32630	52297	52297					0.059877228488517176
LRDLSSEQI	9	Unmodified	_LRDLSSEQI_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;nc|ENSG00000100629|Q6ZU80-1|CEP128;nc|ENSG00000100629|Q6ZU80-3|CEP128	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.78564453125	2	530.785296	1059.55604	-0.96463	-0.00051201	0.41735	0.00022152	-0.54728	-0.00029049	530.7855112515458	52.969	0.52323	52.969	52.673	53.196	0					25	13	2	0	0	0	0.15366	1	5693	5693		98.629	5.4861	1	5512200			46950	2233	32579	32631	52298	52298					0.028642337467317702
LRDLTDILK	9	Unmodified	_LRDLTDILK_					0	0	0		ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8289794921875	2	543.829506	1085.64446	-1.0843	-0.00058967	0.55882	0.0003039	-0.52547	-0.00028576	543.8297172983245	54.608	1.5709	54.608	54.144	55.715	0					93	44	4	0	0	0	0.082191	1	5979	5979		116.9	10.221	1	6906000			46951	9035	32580	32632	52299	52299					0.10506274057183873
LRDLTDILK	9	Unmodified	_LRDLTDILK_					0	0	0		ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8300170898438	2	543.829506	1085.64446	-0.72459	-0.00039405	0.33242	0.00018078	-0.39217	-0.00021328	543.829629819424	54.675	0.9994	54.525	54.266	55.266	-0.15036					80	28	5	0	0	0	0.033448	1	5961	5961		138.83	2.5574	1	6921300			46952	9035	32580	32632	52300	52300					0.10506274057183873
LRDLTDILK	9	Unmodified	_LRDLTDILK_					0	0	0		ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8297729492188	2	543.829506	1085.64446	-0.18623	-0.00010128	-0.20752	-0.00011286	-0.39375	-0.00021414	543.8293124375459	54.411	0.92745	54.509	54.188	55.116	0.098015					80	26	4	0	0	0	0.020687	1	5893	5893		148.99	28.366	1	7428500			46953	9035	32580	32632	52301	52301					0.10506274057183873
LRDRAEGALL	10	Unmodified	_LRDRAEGALL_					0	0	0		ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3238525390625	2	557.32238	1112.63021	-0.11891	-6.6273E-05	3.442	0.0019183	3.3231	0.001852	557.3242306645022	76.058	1.2569	75.8	75.477	76.734	-0.25865					85	30	5	0	0	0	0.52765	1	9025	9025		85.161	4.7062	1	5483500			46954	8639	32581	32633	52302	52302					0.07839621628886562
LRDRRRLQESI	11	Unmodified	_LRDRRRLQESI_					0	0	0			REV__nc|ENSG00000085978|Q676U5-4|ATG16L1	REV__nc|ENSG00000085978|Q676U5-4|ATG16L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2842102050781	3	481.283057	1440.82734	0.27491	0.00013231	0.70429	0.00033896	0.9792	0.00047127	481.2833824979054	99.72	1.6229	99.715	98.389	100.01	-0.0050812					103	37	4	0	0	0	1.0788	1	12709	12709		17.167	1.8293	1	412890	+		46955	20761	32582	32634	52303	52303					0.12456221171714787
LRDSFHLIL	9	Unmodified	_LRDSFHLIL_					0	0	0			REV__ENST00000467539.1_1_2:27325213-27325393:-|nuORF	REV__ENST00000467539.1_1_2:27325213-27325393:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.3237915039062	2	557.324391	1112.63423	-0.41616	-0.00023194	1.3368	0.00074506	0.92068	0.00051312	557.3249748537769	75.899	0.98238	75.899	75.696	76.678	0					46	24	2	0	0	0	0.39228	1	9356	9356		66.429	6.311	1	1107100	+		46956	33077	32583	32635	52304	52304					0.08241711122627748
LRDSFHLIL	9	Unmodified	_LRDSFHLIL_					0	0	0			REV__ENST00000467539.1_1_2:27325213-27325393:-|nuORF	REV__ENST00000467539.1_1_2:27325213-27325393:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.3237915039062	2	557.324391	1112.63423	-0.67615	-0.00037684	1.5497	0.0008637	0.87358	0.00048687	557.3251098837502	76.11	1.0218	75.881	75.669	76.691	-0.22843					46	25	2	0	0	0	0.4752	1	9349	9349		60.972	0.85368	1	1006500	+		46957	33077	32583	32635	52305	52305					0.08241711122627748
LRDTKGFSL	9	Unmodified	_LRDTKGFSL_					0	0	0		nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7927856445312	2	518.792924	1035.57129	0.45961	0.00023844	-1.3333	-0.00069172	-0.87371	-0.00045328	518.7922700880588	51.498	1.0039	51.386	51.089	52.093	-0.11232					85	26	5	0	0	0	0.51687	1	5336	5336		58.23	13.853	1	22487000			46958	6110	32584	32636	52306	52306					0.05493145334571636
LRDTKGFSL	9	Unmodified	_LRDTKGFSL_					0	0	0		nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7926025390625	2	518.792924	1035.57129	-1.3156	-0.00068252	0.27792	0.00014418	-1.0377	-0.00053834	518.793110653343	51.777	1.4702	51.508	51.203	52.673	-0.26903					105	38	5	0	0	0	0.35556	2	5350	5325;5350		68.846	0	1	22848000			46959	6110	32584	32636	52307;52308	52308					0.05493145334571636
LRDTKGFSL	9	Unmodified	_LRDTKGFSL_					0	0	0		nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.7928466796875	2	518.792924	1035.57129	1.0446	0.00054191	-2.1169	-0.0010982	-1.0723	-0.00055631	518.7918380583922	51.611	1.2954	51.427	51.058	52.354	-0.18404					95	33	5	0	0	0	0.32064	4	5289	5289;5301;5314;5341		72.879	18.977	1	19497000			46960	6110	32584	32636	52309;52310;52311;52312	52309					0.05493145334571636
LRDVEEMSI	9	Unmodified	_LRDVEEMSI_					0	0	0			REV__ENST00000467099.6_1_17:18003545-18010551:+|nuORF	REV__ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2745971679688	2	546.273706	1090.53286	-0.20048	-0.00010952	3.9683	0.0021678	3.7678	0.0020582	546.2758396528365	77.703	4.0541	77.441	77.06	81.114	-0.26202					197	96	3	0	0	0	0.45795	1	9227	9227		62.107	6.6032	1	1638500	+		46961	21750	32585	32637	52313	52313					-0.008785283622501083
LREALLNFTLD	11	Unmodified	_LREALLNFTLD_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE;ITGAE|p.N825Dfs*5|1|0.08|ENSG00000083457|chr17:3739854-3739855|-/ATCTCAATATGTC|frameshift_variant	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.577880859375	3	435.578477	1303.7136	0.39261	0.00017101	-2.1089	-0.00091858	-1.7163	-0.00074757	435.57749282765735	110.43	0.71253	110.44	110.12	110.84	0.0069427					55	19	4	0	0	0	1.0501	1	13909	13909		25.068	0.83596	1	361140			46962	1752	32586	32638	52314	52314					0.07389313286103061
LREAPLEEV	9	Unmodified	_LREAPLEEV_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.292724609375	2	528.290214	1054.56587	-0.41626	-0.00021991	-0.145	-7.6604E-05	-0.56127	-0.00029651	528.2901894371032	54.86	1.3726	54.71	54.375	55.747	-0.15036					75	32	3	0	0	0	0.6238	1	6014	6014		51.193	1.9819	1	10567000	+		46963	26177	32587	32639	52315	52315					0.040774217520947786
LREAPLEEV	9	Unmodified	_LREAPLEEV_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2918090820312	2	528.290214	1054.56587	0.32488	0.00017163	-0.88967	-0.00047001	-0.5648	-0.00029838	528.2897676778916	54.497	1.0816	54.595	54.328	55.409	0.098015					70	30	3	0	0	0	0.28753	1	5902	5902		77.318	2.2743	1	11205000	+		46964	26177	32587	32639	52316	52316					0.040774217520947786
LREAPLEEV	9	Unmodified	_LREAPLEEV_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.290214	1054.56587	-0.5865	-0.00030984	0.31001	0.00016378	-0.27649	-0.00014607	528.290310151137	54.742	0.87519	54.595	54.281	55.156	-0.14609	-0.057392	0.00063762	NaN	77.318	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1752600	+		46965	26177	32587	32639							0.040774217520947786
LREAPLEEV	9	Unmodified	_LREAPLEEV_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.290214	1054.56587	-0.36364	-0.00019211	0.021866	1.1551E-05	-0.34177	-0.00018056	528.29013289724	54.911	0.80773	54.68	54.351	55.159	-0.23087	0.027392	0.00033317	NaN	77.318	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1380000	+		46966	26177	32587	32639							0.040774217520947786
LREAPLEEV	9	Unmodified	_LREAPLEEV_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.290214	1054.56587	0.68739	0.00036314	-1.2539	-0.00066242	-0.56652	-0.00029929	528.2894787810923	54.86	0.78751	54.654	54.358	55.145	-0.20613	0.0014993	-0.0010148	NaN	77.318	56	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1406800	+		46967	26177	32587	32639							0.040774217520947786
LREAVLTVSL	10	Unmodified	_LREAVLTVSL_					0	0	0		sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.3086547851562	2	550.837331	1099.66011	-0.39569	-0.00021796	0.20942	0.00011536	-0.18628	-0.00010261	550.8373299503562	50.042	0.25175	49.891	49.708	49.96	-0.1512					9	6	2	0	0	0	0.03519	1	5169	5169		21.686	0	1	155270			46968	37952	32588	32640	52317	52317					0.11426560574227551
LREEERTW	8	Unmodified	_LREEERTW_					0	0	0			REV__ENST00000345662.5_1_2:32288779-32289037:+|nuORF	REV__ENST00000345662.5_1_2:32288779-32289037:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.782958984375	2	559.783087	1117.55162	-0.3807	-0.00021311	-0.15481	-8.666E-05	-0.53551	-0.00029977	559.783001165191	30.938	1.038	30.786	30.341	31.379	-0.15231					82	25	4	0	0	0	0.53523	2	1978	1978;2001		82.305	8.1716	1	9476600	+		46969	30698	32589	32641	52318;52319	52318					-0.0024523067620521033
LREEETIG	8	Unmodified	_LREEETIG_					0	0	0		ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.27197265625	2	473.745639	945.476725	0.36894	0.00017479	-0.21712	-0.00010286	0.15183	7.1927E-05	473.74538146642846	41.576	0.53077	41.599	41.324	41.854	0.023006					37	14	3	0	0	0	0.027866	1	3655	3655		57.811	9.8957	1	534980			46970	15687	32590	32642	52320	52320					0.0018058679258956545
LREEETIG	8	Unmodified	_LREEETIG_					0	0	0		ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.745639	945.476725	0.90858	0.00043044	-0.49338	-0.00023374	0.4152	0.0001967	473.7451999746272	41.477	0.53333	41.477	41.225	41.758	0	0.067721	-0.0026438	NaN	38.806	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598770			46971	15687	32590	32642							0.0018058679258956545
LREEETIG	8	Unmodified	_LREEETIG_					0	0	0		ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.745639	945.476725	0.30296	0.00014352	-0.20367	-9.6486E-05	0.099289	4.7038E-05	473.7454254421307	41.652	0.46727	41.52	41.285	41.753	-0.13219	0.11014	-0.0023693	NaN	38.806	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560820			46972	15687	32590	32642							0.0018058679258956545
LREEETIG	8	Unmodified	_LREEETIG_					0	0	0		ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.745639	945.476725	0.0093409	4.4252E-06	5.6744	0.0026882	5.6837	0.0026927	473.7480951447038	41.303	0.72108	41.167	40.908	41.629	-0.13553	-0.24249	0.0032001	NaN	38.806	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673350			46973	15687	32590	32642							0.0018058679258956545
LREEETIG	8	Unmodified	_LREEETIG_					0	0	0		ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.745639	945.476725	-0.21518	-0.00010194	6.0961	0.002888	5.8809	0.0027861	473.74823327138876	41.536	0.69286	41.308	41.044	41.737	-0.2278	-0.10185	0.0035996	NaN	38.806	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745410			46974	15687	32590	32642							0.0018058679258956545
LREEETIG	8	Unmodified	_LREEETIG_					0	0	0		ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	ENST00000503111.5_1_4:516089-516242:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.745639	945.476725	-0.48209	-0.00022839	6.3648	0.0030153	5.8827	0.0027869	473.74835601886645	41.617	0.85171	41.387	41.08	41.932	-0.23029	-0.02259	0.0038542	NaN	38.806	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1148500			46975	15687	32590	32642							0.0018058679258956545
LREEVLPK	8	Unmodified	_LREEVLPK_					0	0	0		nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;ENSG00000214193|ENST00000453908|SH3D21	nc|ENSG00000214193|A4FU49|SH3D21	nc|ENSG00000214193|A4FU49|SH3D21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.21087646484375	2	492.297842	982.581131	-0.52726	-0.00025957	-0.31879	-0.00015694	-0.84604	-0.00041651	492.29766690688336	49.251	1.1361	49.151	48.918	50.054	-0.1008					48	29	2	0	0	0	0.027866	1	4978	4978		19.104	0	1	293410			46976	10545	32591	32643	52321	52321					0.08914333339942004
LREGPAKQI	9	Unmodified	_LREGPAKQI_					0	0	0			REV__ENSG00000180900|ENST00000356994|SCRIB	REV__ENSG00000180900|ENST00000356994|SCRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3003845214844	2	506.300916	1010.58728	-0.61212	-0.00030992	-1.4062	-0.00071197	-2.0183	-0.0010219	506.3006706752486	32.406	1.4396	32.418	32.063	33.503	0.011799					71	38	3	0	0	0	0.077175	3	2233	2222;2233;2261		118.74	3.249	1	11057000	+		46977	27370	32592	32644	52322;52323;52324	52323					0.08240851571463281
LREGPAKQI	9	Unmodified	_LREGPAKQI_					0	0	0			REV__ENSG00000180900|ENST00000356994|SCRIB	REV__ENSG00000180900|ENST00000356994|SCRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.30010986328125	2	506.300916	1010.58728	-0.29934	-0.00015156	-1.9663	-0.00099552	-2.2656	-0.0011471	506.30048869807183	32.239	1.6185	32.302	32.003	33.622	0.062885					112	42	6	0	0	0	0.043667	3	2177	2154;2177;2190		131.03	13.288	1	10175000	+		46978	27370	32592	32644	52325;52326;52327	52326					0.08240851571463281
LREGQALRE	9	Unmodified	_LREGQALRE_					0	0	0		ENST00000411473.1_1_X:147279889-147280084:-|nuORF	ENST00000411473.1_1_X:147279889-147280084:-|nuORF	ENST00000411473.1_1_X:147279889-147280084:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3306884765625	2	536.298904	1070.58326	-1.0983	-0.00058903	0.86299	0.00046282	-0.23533	-0.0001262	536.3008632572543	46.738	0.26323	46.544	46.38	46.644	-0.19387					15	7	3	0	0	0	0.024466	1	4491	4491		24.519	3.5723	1	264490			46979	13806	32593	32645	52328	52328					0.050787620777555276
LREGTNKF	8	Unmodified	_LREGTNKF_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.8003845214844	2	482.764166	963.513779	0.39581	0.00019108	3.1077	0.0015003	3.5036	0.0016914	482.765503997243	19.807	0.92144	19.646	19.233	20.154	-0.1608					32	18	3	0	0	0	0.027866	1	484	484		24.203	3.7209	1	110040			46980	9730	32594	32646	52329	52329					0.030563031290057552
LREIIKQTKH	10	Unmodified	_LREIIKQTKH_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.5927429199219	3	422.594461	1264.76155	-0.0027145	-1.1471E-06	-4.1298	-0.0017452	-4.1325	-0.0017464	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	1.126	1	5117	5117		24.232	0.85391	1	16177000			46981	7333	32595	32647	52330	52330					0.13976431996798055
LRELDVSK	8	Unmodified	_LRELDVSK_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2620849609375	2	480.279649	958.544745	-0.55864	-0.0002683	-0.17758	-8.5289E-05	-0.73622	-0.00035359	480.27941020355996	28.702	0.73699	28.702	28.449	29.186	0					35	17	3	0	0	0	0.027866	1	1746	1746		26.693	1.1189	1	517010			46982	3244	32596	32648	52331	52331					0.06381456443239131
LRELPVDSL	9	Unmodified	_LRELPVDSL_					0	0	0		ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2552490234375	2	521.300581	1040.58661	0.15051	7.8461E-05	-0.8485	-0.00044232	-0.69799	-0.00036386	521.3000220490356	45.393	0.78534	45.14	44.709	45.494	-0.25252					45	21	3	0	0	0	0.024511	1	4289	4289		40.778	11.629	1	3056100			46983	15598	32597	32649	52332	52332					0.06794012131740601
LRELPVDSL	9	Unmodified	_LRELPVDSL_					0	0	0		ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.300581	1040.58661	-0.8202	-0.00042757	0.88009	0.00045879	0.059887	3.1219E-05	521.3005991940332	45.422	0.60047	45.422	45.079	45.679	0	0.1497	0.0010716	NaN	42.864	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539080			46984	15598	32597	32649							0.06794012131740601
LRELPVDSL	9	Unmodified	_LRELPVDSL_					0	0	0		ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.300581	1040.58661	-0.65953	-0.00034381	1.0297	0.00053676	0.37013	0.00019295	521.3006956593808	45.535	0.57011	45.385	45.078	45.648	-0.15057	0.11224	0.0012276	NaN	42.864	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638400			46985	15598	32597	32649							0.06794012131740601
LRELPVDSL	9	Unmodified	_LRELPVDSL_					0	0	0		ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.300581	1040.58661	-0.37689	-0.00019648	0.1626	8.4766E-05	-0.21429	-0.00011171	521.3005362644125	45.414	0.50149	45.458	45.18	45.681	0.04388	0.1855	0.00032357	NaN	42.864	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	755390			46986	15598	32597	32649							0.06794012131740601
LRENGDSL	8	Unmodified	_LRENGDSL_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2303466796875	2	452.230156	902.445759	0.14346	6.4879E-05	-0.56213	-0.00025421	-0.41866	-0.00018933	452.2299426936562	26.846	1.153	26.846	26.573	27.726	0					47	29	2	0	0	0	0.53523	1	1429	1429		82.305	0	1	6191600			46987	9235	32598	32650	52333	52333					-0.009365665216591879
LREPPGPALL	10	Unmodified	_LREPPGPALL_					0	0	0			REV__nc|ENSG00000167702|Q96AC6|KIFC2;REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8165283203125	2	531.818941	1061.62333	0.26844	0.00014276	-4.3102	-0.0022922	-4.0418	-0.0021495	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.941	1	10333	10333		51.335	1.8939	1	1303400	+		46988	26182;34555	32599	32651	52334	52334					0.09498308748334239
LREPPGPALL	10	Unmodified	_LREPPGPALL_					0	0	0			REV__nc|ENSG00000167702|Q96AC6|KIFC2;REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165893554688	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	1.089	1	10312	10312		34.173	0	1	1297700	+		46989	26182;34555	32599	32651	52335	52335					0.09498308748334239
LREQPCSSR	9	Carbamidomethyl (C)	_LREQPC(Carbamidomethyl (C))SSR_	LREQPC(1)SSR		LREQPC(64)SSR		0	1	0			REV__ENSG00000171045|ENST00000524325|TSNARE1	REV__ENSG00000171045|ENST00000524325|TSNARE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.7809448242188	2	566.780022	1131.54549	0.13909	7.8832E-05	2.8521	0.0016165	2.9912	0.0016953	566.7815304063514	78.636	1.3677	78.444	78.096	79.464	-0.1921					95	32	5	0	0	0	0.42604	1	9738	9738		64.207	12.872	1	5899200	+		46990	26533	32600	32652	52336	52336	351				-0.015020721793689518
LREREDGGLL	10	Unmodified	_LREREDGGLL_					0	0	0			REV__ENST00000476803.1_1_1:2121150-2125598:-|nuORF	REV__ENST00000476803.1_1_1:2121150-2125598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.3159790039062	2	579.317294	1156.62004	-0.33748	-0.00019551	-2.5482	-0.0014762	-2.8857	-0.0016717	579.3156156902409	99.309	0.78602	99.32	98.957	99.743	0.010239					33	15	3	0	0	0	1.0236	1	12691	12691		42.864	0.46813	1	116730	+		46991	25457	32601	32653	52337	52337					0.04799013903675586
LRERGLLL	8	Unmodified	_LRERGLLL_					0	0	0		ENST00000370981.1_1_1:68512975-68516310:-|nuORF	ENST00000370981.1_1_1:68512975-68516310:-|nuORF	ENST00000370981.1_1_1:68512975-68516310:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7984619140625	2	485.313826	968.613099	1.3787	0.0006691	4.2219	0.0020489	5.6006	0.002718	485.31649653544747	59.034	0.3229	58.847	58.648	58.971	-0.18705					16	8	3	0	0	0	0.027866	1	6682	6682		47.916	0	1	353740			46992	12978	32602	32654	52338	52338					0.12753745813768091
LRERLGAL	8	Unmodified	_LRERLGAL_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2722473144531	2	464.290351	926.566149	0.69338	0.00032193	1.2628	0.00058633	1.9562	0.00090826	464.2909167780517	19.391	0.19637	19.391	19.218	19.414	0					5	3	2	0	0	0	0.027866	1	395	395		42.396	0	1	23027			46993	9581	32603	32655	52339	52339					0.09992886262602951
LRERLLKRE	9	Unmodified	_LRERLLKRE_					0	0	0			REV__nc|ENSG00000257594|Q8N4A0-2|GALNT4	REV__nc|ENSG00000257594|Q8N4A0-2|GALNT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.88037109375	2	606.880396	1211.74624	-1.0815	-0.00065632	0.95232	0.00057794	-0.12914	-7.8372E-05	606.880861580956	26.447	0.88624	26.284	25.951	26.837	-0.16331					70	23	4	0	0	0	0.78823	1	1363	1363		25.574	7.312	1	1572900	+		46994	29091	32604	32656	52340	52340					0.14883565199579607
LRESQPYLF	9	Unmodified	_LRESQPYLF_					0	0	0		ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.78564453125	2	576.806031	1151.59751	-0.7604	-0.0004386	-3.9844	-0.0022982	-4.7448	-0.0027368	576.8034327749007	34.672	0.59425	34.489	34.245	34.839	-0.18298					25	14	3	0	0	0	0.02435	1	2535	2535		26.693	9.9755	1	322130			46995	5891	32605	32657	52341	52341					0.02777414506022069
LREYPLFL	8	Unmodified	_LREYPLFL_					0	0	0		ENST00000495316.2_1_19:43701972-43708038:-|nuORF	ENST00000495316.2_1_19:43701972-43708038:-|nuORF	ENST00000495316.2_1_19:43701972-43708038:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.8024291992188	2	525.80276	1049.59097	-0.34685	-0.00018237	-0.27021	-0.00014208	-0.61706	-0.00032445	525.8027046355868	101.64	1.3777	101.65	101.25	102.63	0.0090332					77	31	5	0	0	0	0.40853	2	12973	12962;12973		96.048	2.0413	1	2034600			46996	15548	32606	32658	52342;52343	52343					0.06815521345333764
LRFEAKSP	8	Unmodified	_LRFEAKSP_					0	0	0		ENST00000414273.1_1_1:567800-567992:+|nuORF	ENST00000414273.1_1_1:567800-567992:+|nuORF	ENST00000414273.1_1_1:567800-567992:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.2700500488281	2	474.269084	946.523616	0.1606	7.6169E-05	3.8157	0.0018097	3.9763	0.0018858	474.27085511490003	24.945	1.3936	24.945	24.429	25.823	0					78	32	3	0	0	0	0.91956	1	1112	1112		49.442	1.5259	1	1645600			46997	13858	32607	32659	52344	52344					0.04821491134373446
LRFEAKSP	8	Unmodified	_LRFEAKSP_					0	0	0		ENST00000414273.1_1_1:567800-567992:+|nuORF	ENST00000414273.1_1_1:567800-567992:+|nuORF	ENST00000414273.1_1_1:567800-567992:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.2704162597656	2	474.269084	946.523616	0.33933	0.00016094	3.4251	0.0016244	3.7644	0.0017854	474.27076014061646	24.034	0.62833	24.112	23.736	24.364	0.078196					39	13	4	0	0	0	0.6248	1	970	970		73.975	2.679	1	2335100			46998	13858	32607	32659	52345	52345					0.04821491134373446
LRFENGVL	8	Unmodified	_LRFENGVL_					0	0	0		ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.2703552246094	2	474.269084	946.523616	0.1606	7.6169E-05	3.8157	0.0018097	3.9763	0.0018858	474.27085511490003	24.945	1.3936	24.945	24.429	25.823	0					78	32	3	0	0	0	0.6536	1	1123	1123		71.296	7.9894	1	1645600			46999	10107	32608	32660	52346	52346					0.048214911343848144
LRFENGVL	8	Unmodified	_LRFENGVL_					0	0	0		ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.2699890136719	2	474.269084	946.523616	0.54541	0.00025867	3.2806	0.0015559	3.826	0.0018146	474.2705481960665	25.142	1.7224	25.223	24.733	26.455	0.08009					93	40	3	0	0	0	0.53523	2	1130	1087;1130		82.305	8.3303	1	1733700			47000	10107	32608	32660	52347;52348	52348					0.048214911343848144
LRFGLPAI	8	Unmodified	_LRFGLPAI_					0	0	0			REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.7792053222656	2	443.779088	885.543623	-0.41261	-0.00018311	0.59273	0.00026304	0.18012	7.9933E-05	443.7792388490553	74.008	1.0612	74.017	73.793	74.854	0.0096588					46	24	2	0	0	0	0.88442	1	8967	8967		52.299	0	1	2153000	+		47001	35262	32609	32661	52349	52349					0.09627286864974849
LRFHTSPPT	9	Unmodified	_LRFHTSPPT_					0	0	0		ENST00000370339.7_1_20:61834750-61835101:-|nuORF	ENST00000370339.7_1_20:61834750-61835101:-|nuORF	ENST00000370339.7_1_20:61834750-61835101:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2825927734375	2	528.285266	1054.55598	-1.1316	-0.0005978	-3.5399	-0.0018701	-4.6714	-0.0024679	528.2834348688536	24.076	0.96004	24.076	23.737	24.697	0					73	21	4	0	0	0	0.67687	1	1041	1041		47.657	1.6851	1	3302400			47002	12957	32610	32662	52350	52350					0.030882785373478328
LRFLEDTFGND	11	Unmodified	_LRFLEDTFGND_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1;ENST00000466794.5_1_19:12769146-12777470:-|nuORF	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.77130126953125	3	442.882337	1325.62518	0.028636	1.2682E-05	-0.31977	-0.00014162	-0.29113	-0.00012894	442.8818682264361	32.651	0.52337	32.494	32.284	32.807	-0.15772					25	12	3	0	0	0	0.02476	1	2224	2224		38.714	0	1	156180			47003	2598	32611	32663	52351	52351					-0.024607270243905077
LRFNKSRVN	9	Unmodified	_LRFNKSRVN_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180	REV__nc|ENSG00000197816|Q9P1Z9|CCDC180	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.33056640625	2	567.330539	1132.64652	0.34076	0.00019332	-1.6564	-0.00093973	-1.3156	-0.0007464	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	0.99229	1	11130	11130		21.96	2.8564	1	4116000	+		47004	37064	32612	32664	52352	52352					0.0855074758567298
LRFRFFRDD	9	Unmodified	_LRFRFFRDD_					0	0	0		ENST00000481082.1_1_1:157512505-157514867:-|nuORF;nc|ENSG00000143297|Q96RD9-4|FCRL5;nc|ENSG00000143297|Q96RD9-3|FCRL5;ENSG00000143297|ENST00000361835|FCRL5	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	635.3834228515625	2	636.335821	1270.65709	-0.9682	-0.0006161	1.8363	0.0011685	0.86815	0.00055244	636.3366847981081	104.98	0.26134	104.85	104.74	105	-0.12444					12	8	2	0	0	0	0.024527	1	13051	13051		31.53	22.836	1	26444			47005	5628	32613	32665	52353	52353					0.03258730240077057
LRFTKLESL	9	Unmodified	_LRFTKLESL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8048095703125	2	553.832049	1105.64954	-0.12775	-7.0751E-05	-0.30335	-0.00016801	-0.4311	-0.00023876	553.8320552117325	68.437	0.4438	68.176	67.939	68.382	-0.26166					17	10	2	0	0	0	0.024261	1	7877	7877		45.972	0	1	171900	+		47006	24045	32614	32666	52354	52354					0.10094577919790026
LRGACCIQN	9	Unmodified	_LRGACCIQN_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2867736816406	2	489.236404	976.458255	0.58161	0.00028454	-1.0255	-0.00050171	-0.44389	-0.00021717	489.23795466530385	63.702	0.43613	63.443	63.239	63.675	-0.25824					17	11	2	0	0	0	0.024487	1	7168	7168		40.573	17.53	1	59850	+		47007	20103	32615	32667	52355	52355					-0.030915696546458094
LRGAITPL	8	Unmodified	_LRGAITPL_					0	0	0			REV__ENST00000360265.8_1_4:7763474-7763684:-|nuORF	REV__ENST00000360265.8_1_4:7763474-7763684:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.240478515625	2	420.76872	839.522887	-0.17618	-7.413E-05	0.52872	0.00022247	0.35254	0.00014834	420.7688583654834	23.594	0.62239	23.414	23.201	23.824	-0.17989					22	14	2	0	0	0	0.027866	1	963	963		33.516	5.2613	1	143270	+		47008	30901	32616	32668	52356	52356					0.09670696485306962
LRGALLPSL	9	Unmodified	_LRGALLPSL_					0	0	0		nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.3027648925781	2	470.302927	938.591301	0.86728	0.00040789	-0.66138	-0.00031105	0.20591	9.6838E-05	470.30248570148956	71.628	0.76373	71.34	71.074	71.838	-0.28858					42	19	3	0	0	0	0.15029	1	8657	8657		99.375	1.9023	1	1254100			47009	18552	32617	32669	52357	52357					0.11954941065175717
LRGALLPSL	9	Unmodified	_LRGALLPSL_					0	0	0		nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.302927	938.591301	0.89748	0.00042209	-0.68896	-0.00032402	0.20852	9.8066E-05	470.30247978201896	71.335	0.84412	71.335	70.987	71.831	0	-0.028263	-6.6118E-05	NaN	99.375	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1111900			47010	18552	32617	32669							0.11954941065175717
LRGALLPSL	9	Unmodified	_LRGALLPSL_					0	0	0		nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.302927	938.591301	0.68016	0.00031988	-0.44272	-0.00020821	0.23745	0.00011167	470.30256904019427	71.404	0.90009	71.415	71.124	72.024	0.010735	0.051707	0.0001655	NaN	99.375	53	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152300			47011	18552	32617	32669							0.11954941065175717
LRGAQPLL	8	Unmodified	_LRGAQPLL_					0	0	0			REV__ENST00000466016.5_1_17:45904324-45908883:-|nuORF	REV__ENST00000466016.5_1_17:45904324-45908883:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.2745361328125	2	434.27417	866.533787	-0.15626	-6.7861E-05	-0.040256	-1.7482E-05	-0.19652	-8.5343E-05	434.27415018264725	47.732	1.6469	47.732	47.252	48.899	0					86	48	4	0	0	0	0.88442	1	4852	4852		52.299	7.7681	1	18306000	+		47012	25233	32618	32670	52358	52358					0.09518098859598467
LRGAQPLL	8	Unmodified	_LRGAQPLL_					0	0	0			REV__ENST00000466016.5_1_17:45904324-45908883:-|nuORF	REV__ENST00000466016.5_1_17:45904324-45908883:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2738342285156	2	434.27417	866.533787	-0.22234	-9.6558E-05	0.065116	2.8278E-05	-0.15723	-6.828E-05	434.27417487933866	47.873	1.456	47.72	47.336	48.792	-0.15301					85	42	4	0	0	0	0.78609	1	4845	4845		60.294	7.9948	1	19138000	+		47013	25233	32618	32670	52359	52359					0.09518098859598467
LRGEDGEPR	9	Unmodified	_LRGEDGEPR_					0	0	0		ENST00000368426.3_1_1:154975145-154987153:+|nuORF	ENST00000368426.3_1_1:154975145-154987153:+|nuORF	ENST00000368426.3_1_1:154975145-154987153:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8146362304688	2	514.759612	1027.50467	-0.60662	-0.00031227	3.3324	0.0017154	2.7258	0.0014031	514.7617525080802	45.346	0.75015	45.197	44.83	45.581	-0.1488					75	21	5	0	0	0	0.024466	1	4321	4321		39.253	13.803	1	2759700			47014	12891	32619	32671	52360	52360					-0.007980902273402535
LRGEIEIEV	9	Unmodified	_LRGEIEIEV_					0	0	0			REV__ENSG00000100425|ENST00000404760|BRD1	REV__ENSG00000100425|ENST00000404760|BRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2979125976562	2	529.298039	1056.58152	-0.37305	-0.00019746	-0.63765	-0.00033751	-1.0107	-0.00053496	529.2974143487326	52.191	1.264	52.043	51.609	52.873	-0.14735					103	32	7	0	0	0	0.20967	1	5576	5576		87.754	2.8388	1	10431000	+		47015	21115	32620	32672	52361	52361					0.0554970826913177
LRGFAAGCLL	10	Unmodified	_LRGFAAGCLL_					0	0	0			REV__nc|ENSG00000011021|P51797-6|CLCN6	REV__nc|ENSG00000011021|P51797-6|CLCN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.8441162109375	2	510.786587	1019.55862	-0.67414	-0.00034434	-1.7186	-0.00087785	-2.3928	-0.0012222	510.78669407908797	76.089	0.49886	76.089	75.769	76.268	0					20	12	3	0	0	0	0.03519	1	9382	9382		47.916	10.887	1	117530	+		47016	19915	32621	32673	52362	52362					0.0496241067066876
LRGFLPLEG	9	Unmodified	_LRGFLPLEG_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2907409667969	2	501.292559	1000.57057	-0.38963	-0.00019532	-4.2687	-0.0021399	-4.6584	-0.0023352	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.62163	1	10738	10738		51.335	7.2187	1	8504000			47017	12698	32622	32674	52363	52363					0.07030350685522535
LRGFLPLEG	9	Unmodified	_LRGFLPLEG_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2901916503906	2	501.292559	1000.57057	-0.20958	-0.00010506	-3.7508	-0.0018802	-3.9604	-0.0019853	501.2904390152303	88.357	2.0156	88.219	87.862	89.877	-0.13744					89	47	3	0	0	0	0.94809	1	10792	10792		29.15	1.2673	1	1494100			47018	12698	32622	32674	52364	52364					0.07030350685522535
LRGGRLPTP	9	Unmodified	_LRGGRLPTP_					0	0	0		ENST00000374490.7_1_1:24128417-24128612:-|nuORF	ENST00000374490.7_1_1:24128417-24128612:-|nuORF	ENST00000374490.7_1_1:24128417-24128612:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2704162597656	2	483.795801	965.577048	-0.64539	-0.00031224	0.51705	0.00025015	-0.12834	-6.209E-05	483.7958817067251	31.847	0.59844	31.916	31.646	32.244	0.06896					35	14	3	0	0	0	0.0245	1	2114	2114		36.447	10.873	1	291190			47019	13118	32623	32675	52365	52365					0.09288288636867037
LRGGRLPTP	9	Unmodified	_LRGGRLPTP_					0	0	0		ENST00000374490.7_1_1:24128417-24128612:-|nuORF	ENST00000374490.7_1_1:24128417-24128612:-|nuORF	ENST00000374490.7_1_1:24128417-24128612:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.795801	965.577048	-0.35176	-0.00017018	0.0068717	3.3245E-06	-0.34489	-0.00016685	483.79570195533233	32.105	0.62462	32.105	31.869	32.494	0	0.087354	-0.00024322	NaN	29.17	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345560			47020	13118	32623	32675							0.09288288636867037
LRGGRLPTP	9	Unmodified	_LRGGRLPTP_					0	0	0		ENST00000374490.7_1_1:24128417-24128612:-|nuORF	ENST00000374490.7_1_1:24128417-24128612:-|nuORF	ENST00000374490.7_1_1:24128417-24128612:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.795801	965.577048	-0.44264	-0.00021415	0.21508	0.00010406	-0.22756	-0.00011009	483.7957086963553	32.02	0.5556	32.031	31.782	32.338	0.011799	0.013787	-4.1762E-05	NaN	29.17	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250880			47021	13118	32623	32675							0.09288288636867037
LRGHPFLRRN	10	Unmodified	_LRGHPFLRRN_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3692016601562	2	633.37053	1264.72651	0.31837	0.00020164	-2.6129	-0.0016549	-2.2946	-0.0014533	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	1.1329	1	11892	11892		27.882	1.1893	1	3419700			47022	4365	32624	32676	52366	52366					0.10473233979519136
LRGHPFLRRN	10	Unmodified	_LRGHPFLRRN_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3692016601562	2	633.37053	1264.72651	0.38898	0.00024637	-2.6471	-0.0016766	-2.2581	-0.0014302	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	1.0781	1	11940	11940		35.618	1.6967	1	3178500			47023	4365	32624	32676	52367	52367					0.10473233979519136
LRGHPFLRRN	10	Unmodified	_LRGHPFLRRN_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.369384765625	2	633.37053	1264.72651	-0.65795	-0.00041673	-1.6036	-0.0010157	-2.2616	-0.0014324	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	1.089	1	11862	11862		34.173	2.6427	1	3181800			47024	4365	32624	32676	52368	52368					0.10473233979519136
LRGHPFLRRN	10	Unmodified	_LRGHPFLRRN_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.368408203125	2	633.37053	1264.72651	-0.4938	-0.00031276	-1.906	-0.0012072	-2.3998	-0.00152	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0992	1	11772	11772		32.812	6.1195	1	9845500			47025	4365	32624	32676	52369	52369					0.10473233979519136
LRGHRGGEVC	10	Unmodified	_LRGHRGGEVC_					0	0	0			REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|42|3|sense	REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|42|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2958984375	2	542.277449	1082.54035	2.6288	0.0014255	-1.7809	-0.00096574	0.84792	0.00045981	542.2765329684933	18.024	0.44003	18.024	17.844	18.284	0					13	8	2	0	0	0	0.03519	1	257	257		35.152	19.51	1	19340	+		47026	37615	32625	32677	52370	52370					0.0023766874869579624
LRGHRRKV	8	Unmodified	_LRGHRRKV_					0	0	0			REV__ENST00000552540.5_2_12:57107337-57108468:-|nuORF	REV__ENST00000552540.5_2_12:57107337-57108468:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.32745361328125	2	511.328134	1020.64171	0.48015	0.00024551	-2.4781	-0.0012671	-1.9979	-0.0010216	511.326731002724	96.077	1.1484	96.084	95.732	96.881	0.0065002					67	26	4	0	0	0	1.0574	1	12201	12201		19.36	1.0356	1	1445900	+		47027	34956	32626	32678	52371	52371					0.13221908233549584
LRGIDKKHGAL	11	Unmodified	_LRGIDKKHGAL_					0	0	0			REV__ENSG00000198759|ENST00000361306|EGFL6	REV__ENSG00000198759|ENST00000361306|EGFL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.3662719726562	2	604.367121	1206.71969	-0.25622	-0.00015485	-0.39433	-0.00023832	-0.65055	-0.00039317	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	1.0074	1	12842	12842		32.812	0	1	4809400	+		47028	28468	32627	32679	52372	52372					0.12459876308275852
LRGIKQETT	9	Unmodified	_LRGIKQETT_					0	0	0		ENST00000333055.8_1_5:180218346-180218421:-|nuORF	ENST00000333055.8_1_5:180218346-180218421:-|nuORF	ENST00000333055.8_1_5:180218346-180218421:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.303466796875	2	523.303655	1044.59276	0.12304	6.4388E-05	-0.40431	-0.00021158	-0.28127	-0.00014719	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	0.96322	1	10305	10305		27.882	3.3631	1	3963900			47029	12366	32628	32680	52373	52373					0.07224530363282611
LRGIKQETT	9	Unmodified	_LRGIKQETT_					0	0	0		ENST00000333055.8_1_5:180218346-180218421:-|nuORF	ENST00000333055.8_1_5:180218346-180218421:-|nuORF	ENST00000333055.8_1_5:180218346-180218421:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3042602539062	2	523.303655	1044.59276	-1.1808	-0.0006179	1.486	0.00077761	0.30519	0.00015971	523.3043344110223	90.238	1.0253	90.083	89.781	90.806	-0.1552					44	24	2	0	0	0	0.97455	1	11015	11015		25.574	0	1	1555500			47030	12366	32628	32680	52374	52374					0.07224530363282611
LRGKSLQII	9	Unmodified	_LRGKSLQII_					0	0	0			REV__ENSG00000185215|ENST00000560869|TNFAIP2	REV__ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7701416015625	2	514.334759	1026.65496	-0.78673	-0.00040464	0.19137	9.8426E-05	-0.59536	-0.00030622	514.3346500420924	43.598	0.57592	43.453	43.205	43.781	-0.14471					25	15	3	0	0	0	0.024495	1	4037	4037		34.173	6.2903	1	363160	+		47031	27742	32629	32681	52375	52375					0.14270301502278926
LRGLAPRARA	10	Unmodified	_LRGLAPRARA_					0	0	0			REV__ENST00000295092.2_1_2:14774381-14774603:+|nuORF	REV__ENST00000295092.2_1_2:14774381-14774603:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.2896728515625	2	540.841074	1079.66759	-0.3908	-0.00021136	0.30784	0.00016649	-0.082963	-4.487E-05	540.8411108916886	18.508	0.63838	18.376	18.056	18.694	-0.13147					30	12	3	0	0	0	0.03519	1	255	255		32.812	13.452	1	237270	+		47032	29972	32630	32682	52376	52376					0.13094757685189506
LRGLGPHGPRG	11	Unmodified	_LRGLGPHGPRG_					0	0	0			REV__ENST00000452859.6_1_17:46184937-46190729:+|nuORF	REV__ENST00000452859.6_1_17:46184937-46190729:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7576904296875	2	558.822881	1115.63121	0.10942	6.1147E-05	1.7524	0.00097929	1.8618	0.0010404	558.8237941382589	71.729	0.92529	71.454	71.273	72.198	-0.27509					31	22	2	0	0	0	0.024741	1	8382	8382		37.812	22.17	1	289720	+		47033	32741	32631	32683	52377	52377					0.07801880788451854
LRGLPLLVALL	11	Unmodified	_LRGLPLLVALL_					0	0	0		nc|ENSG00000099889|O00192-2|ARVCF;ENSG00000099889|ENST00000263207|ARVCF	nc|ENSG00000099889|O00192-2|ARVCF	nc|ENSG00000099889|O00192-2|ARVCF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.405184	1176.79581	-2.1307	-0.0012558	3.4027	0.0020056	1.272	0.00074975	589.4068787095312	92.705	0.20676	92.562	92.447	92.654	-0.14356					6	4	2	0	0	0	0.024738	1	11401	11401		34.173	7.4796	1	25164			47034	2093	32632	32684	52378	52378					0.2144888015570814
LRGLPLLVALL	11	Unmodified	_LRGLPLLVALL_					0	0	0		nc|ENSG00000099889|O00192-2|ARVCF;ENSG00000099889|ENST00000263207|ARVCF	nc|ENSG00000099889|O00192-2|ARVCF	nc|ENSG00000099889|O00192-2|ARVCF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3431396484375	2	589.405184	1176.79581	-0.61884	-0.00036474	-1.6662	-0.00098204	-2.285	-0.0013468	589.4043716978497	93.443	0.43768	93.299	92.958	93.395	-0.1441					10	9	2	0	0	0	0.024776	1	11496	11496		20.947	15.026	1	32357			47035	2093	32632	32684	52379	52379					0.2144888015570814
LRGLRTPPVEQ	11	Unmodified	_LRGLRTPPVEQ_					0	0	0			REV__ENST00000252699.6_1_19:39220084-39220528:+|nuORF	REV__ENST00000252699.6_1_19:39220084-39220528:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3689575195312	2	633.369861	1264.72517	1.1238	0.00071176	-2.2404	-0.001419	-1.1166	-0.00070723	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0017	1	12112	12112		36.447	2.2742	1	8250400	+		47036	29513	32633	32685	52380	52380					0.1033955510006308
LRGLRTPPVEQ	11	Unmodified	_LRGLRTPPVEQ_					0	0	0			REV__ENST00000252699.6_1_19:39220084-39220528:+|nuORF	REV__ENST00000252699.6_1_19:39220084-39220528:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3695068359375	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.013	1	12055	12055		33.922	3.6039	1	9845500	+		47037	29513	32633	32685	52381	52381					0.1033955510006308
LRGLSDPTQ	9	Unmodified	_LRGLSDPTQ_					0	0	0			REV__ENST00000178640.9_1_15:67835419-67835617:+|nuORF	REV__ENST00000178640.9_1_15:67835419-67835617:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7712707519531	2	493.766906	985.519259	-0.39864	-0.00019684	0.75345	0.00037203	0.35481	0.00017519	493.76709630047156	36.731	0.48041	36.769	36.444	36.924	0.038044					20	12	2	0	0	0	0.024209	1	2909	2909		47.657	0	1	888790	+		47038	29291	32634	32686	52382	52382					0.025919819208070294
LRGLTVERA	9	Unmodified	_LRGLTVERA_					0	0	0			REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8066101074219	2	507.806365	1013.59818	-0.60425	-0.00030684	0.89929	0.00045667	0.29504	0.00014982	507.80662406413126	34.517	0.92737	34.517	34.129	35.056	0					52	23	3	0	0	0	0.29158	1	2582	2582		76.774	10.345	1	3424000	+		47039	36682	32635	32687	52383	52383					0.09192253945752782
LRGLTVERA	9	Unmodified	_LRGLTVERA_					0	0	0			REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.806396484375	2	507.806365	1013.59818	-0.18856	-9.5754E-05	0.36144	0.00018354	0.17288	8.779E-05	507.80640555696993	34.336	0.82064	34.332	33.948	34.769	-0.0045624					44	20	3	0	0	0	0.18915	2	2552	2541;2552		90.777	5.8611	1	3274500	+		47040	36682	32635	32687	52384;52385	52385					0.09192253945752782
LRGLTVERA	9	Unmodified	_LRGLTVERA_					0	0	0			REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.80584716796875	2	507.806365	1013.59818	-0.88022	-0.00044698	1.1536	0.00058578	0.27333	0.0001388	507.8067116011844	34.433	0.97263	34.483	34.047	35.02	0.050255					56	24	3	0	0	0	0.29158	2	2521	2510;2521		76.774	1.7308	1	2752500	+		47041	36682	32635	32687	52386;52387	52387					0.09192253945752782
LRGLTVERA	9	Unmodified	_LRGLTVERA_					0	0	0			REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	507.806365	1013.59818	-0.18856	-9.5754E-05	0.36144	0.00018354	0.17288	8.779E-05	507.80640555696993	34.336	0.82064	34.332	33.948	34.769	-0.0045624	-0.11242	-0.0004756	NaN	90.777	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3274500	+		47042	36682	32635	32687							0.09192253945752782
LRGLYTTVD	9	Unmodified	_LRGLYTTVD_					0	0	0		ENSG00000163521|ENST00000295759|GLB1L;GLB1L|p.T342Hfs*29|1|0.31|ENSG00000163521|chr2:219239131-219239131|G/-|frameshift_variant	ENSG00000163521|ENST00000295759|GLB1L	ENSG00000163521|ENST00000295759|GLB1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2640380859375	2	519.284931	1036.55531	-0.36707	-0.00019061	1.7836	0.00092622	1.4166	0.00073561	519.2849509537824	56.088	0.69251	55.932	55.517	56.21	-0.15602					46	18	4	0	0	0	0.024405	1	6236	6236		35.618	13.658	1	1026300			47043	7097	32636	32688	52388	52388					0.03849439097666618
LRGMNRPSI	9	Oxidation (M)	_LRGM(Oxidation (M))NRPSI_		LRGM(1)NRPSI		LRGM(66)NRPSI	0	0	1			REV__ENST00000400788.8_1_6:157713732-157713921:-|nuORF	REV__ENST00000400788.8_1_6:157713732-157713921:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2881469726562	2	530.290025	1058.5655	-0.97471	-0.00051688	-2.0074	-0.0010645	-2.9822	-0.0015814	530.2887112521873	45.69	0.71638	45.539	45.309	46.026	-0.15157					52	20	5	0	0	0	0.39228	1	4433	4433		66.429	10.925	1	7409300	+		47044	31853	32637	32689	52389	52389		887			0.038557235512371335
LRGPVRSA	8	Unmodified	_LRGPVRSA_					0	0	0			REV__ENST00000355528.8_1_17:80887258-80888423:+|nuORF	REV__ENST00000355528.8_1_17:80887258-80888423:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2618713378906	2	428.261594	854.508634	0.4968	0.00021276	-0.17636	-7.5526E-05	0.32044	0.00013723	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0106	1	11358	11358		35.618	2.8059	1	86424000	+		47045	30776	32638	32690	52390	52390					0.0755604405703707
LRGPWEAA	8	Unmodified	_LRGPWEAA_					0	0	0			REV__nc|ENSG00000101199|Q8N6T3-3|ARFGAP1	REV__nc|ENSG00000101199|Q8N6T3-3|ARFGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2438049316406	2	450.240327	898.466101	-0.4364	-0.00019649	4.0982	0.0018452	3.6618	0.0016487	450.2421079739635	31.07	0.70716	30.885	30.576	31.283	-0.18503					61	17	5	0	0	0	0.94517	1	2027	2027		45.952	5.1738	1	1296400	+		47046	36526	32639	32691	52391	52391					0.012806489287868317
LRGRPKSL	8	Unmodified	_LRGRPKSL_					0	0	0			REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.79827880859375	2	463.798343	925.582134	0.079497	3.6871E-05	0.13741	6.3729E-05	0.2169	0.0001006	463.79827981471084	41.584	0.89548	41.584	41.292	42.187	0					61	25	3	0	0	0	0.99042	1	3766	3766		38.806	0	1	2631300	+		47047	32342	32640	32692	52392	52392					0.11636592499519338
LRGSAVDF	8	Unmodified	_LRGSAVDF_					0	0	0			REV__nc|ENSG00000006282|Q8TB22-3|SPATA20	REV__nc|ENSG00000006282|Q8TB22-3|SPATA20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7320251464844	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	1.0106	1	12567	12567		35.618	0	1	3615900	+		47048	19827	32641	32693	52393	52393					0.012929426918958598
LRGSAVDF	8	Unmodified	_LRGSAVDF_					0	0	0			REV__nc|ENSG00000006282|Q8TB22-3|SPATA20	REV__nc|ENSG00000006282|Q8TB22-3|SPATA20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7318115234375	2	432.732335	863.450116	1.1632	0.00050335	-1.9665	-0.00085099	-0.80336	-0.00034764	432.7312915054073	99.078	2.4922	98.954	97.371	99.863	-0.12459					146	62	4	0	0	0	1.0106	2	12307	12285;12307		35.618	2.1027	1	1722000	+		47049	19827	32641	32693	52394;52395	52395					0.012929426918958598
LRGSIRPT	8	Unmodified	_LRGSIRPT_					0	0	0			REV__ENST00000487659.1_1_1:1341772-1341910:-|nuORF	REV__ENST00000487659.1_1_1:1341772-1341910:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.274658203125	2	450.274701	898.534849	-0.35559	-0.00016011	-0.72196	-0.00032508	-1.0775	-0.00048519	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	1.043	1	11788	11788		30.504	2.6214	1	67958000	+		47050	33618	32642	32694	52396	52396					0.08152313228526964
LRGSIRPT	8	Unmodified	_LRGSIRPT_					0	0	0			REV__ENST00000487659.1_1_1:1341772-1341910:-|nuORF	REV__ENST00000487659.1_1_1:1341772-1341910:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2745666503906	2	450.274701	898.534849	0.37578	0.0001692	-1.4515	-0.00065358	-1.0757	-0.00048437	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	0.99042	1	11702	11702		38.806	0	1	69580000	+		47051	33618	32642	32694	52397	52397					0.08152313228526964
LRGTRGGGGG	10	Unmodified	_LRGTRGGGGG_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	444.2459716796875	2	444.243932	886.473312	-0.38856	-0.00017261	3.1151	0.0013839	2.7266	0.0012113	444.24570454476	102.79	1.6394	102.79	102.21	103.85	0					89	39	5	0	0	0	1.0002	1	13183	13183		45.972	1.8554	1	7543800			47052	8074	32643	32695	52398	52398					0.02553381529253329
LRGTRLKDVH	10	Unmodified	_LRGTRLKDVH_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8568115234375	2	597.856921	1193.69929	-0.54175	-0.00032389	-0.12591	-7.5274E-05	-0.66766	-0.00039916	597.8567189287833	95.585	1.2856	95.433	95.098	96.384	-0.15186					62	29	3	0	0	0	1.0992	1	11781	11781		32.812	0	1	353870			47053	8441	32644	32696	52399	52399					0.11018705648439209
LRGVFLTLGAM	11	Unmodified	_LRGVFLTLGAM_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3431396484375	2	589.341726	1176.6689	-2.3877	-0.0014071	4.3747	0.0025782	1.987	0.001171	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	0.96599	4	11602	11427;11450;11568;11602		44.377	15.207	1	4758600	+		47054	21613	32645	32697	52400;52401;52402;52403	52403					0.08763210939059718
LRGVFLTLGAM	11	Unmodified	_LRGVFLTLGAM_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3430786132812	2	589.341726	1176.6689	-1.6043	-0.00094547	3.4637	0.0020413	1.8594	0.0010958	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0292	1	11649	11649		30.318	4.7437	1	12648000	+		47055	21613	32645	32697	52404	52404					0.08763210939059718
LRGVFLTLGAM	11	Unmodified	_LRGVFLTLGAM_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3442993164062	2	589.341726	1176.6689	-1.1102	-0.00065427	3.0265	0.0017836	1.9163	0.0011294	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	1.0017	5	11400	11389;11400;11410;11422;11434		36.447	3.6248	1	4794700	+		47056	21613	32645	32697	52405;52406;52407;52408;52409	52406					0.08763210939059718
LRGVFLTLGAM	11	Unmodified	_LRGVFLTLGAM_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3441162109375	2	589.341726	1176.6689	0.92698	0.00054631	0.37938	0.00022358	1.3064	0.00076989	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	0.95882	2	11341	11275;11341		45.972	6.7194	1	4746700	+		47057	21613	32645	32697	52410;52411	52411					0.08763210939059718
LRGVFLTLGAM	11	Unmodified	_LRGVFLTLGAM_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.343505859375	2	589.341726	1176.6689	-1.6034	-0.00094497	3.5155	0.0020718	1.9121	0.0011269	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0075	2	11043	11043;11069		35.152	8.1047	1	5827400	+		47058	21613	32645	32697	52412;52413	52412					0.08763210939059718
LRGVFLTLGAM	11	Unmodified	_LRGVFLTLGAM_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3430786132812	2	589.341726	1176.6689	-1.3212	-0.00077864	3.3274	0.001961	2.0062	0.0011823	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	0.95882	3	11095	11071;11095;11105		45.972	5.7985	1	5175100	+		47059	21613	32645	32697	52414;52415;52416	52415					0.08763210939059718
LRHAHLWL	8	Unmodified	_LRHAHLWL_					0	0	0			REV__ENST00000464074.6_1_10:16806454-16859411:-|nuORF	REV__ENST00000464074.6_1_10:16806454-16859411:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3244018554688	2	523.306336	1044.59812	0.32793	0.00017161	-2.1192	-0.001109	-1.7913	-0.00093741	523.3054412822586	79.637	0.75398	79.417	79.076	79.83	-0.21923					38	17	3	0	0	0	0.027866	1	9492	9492		46.766	6.1938	1	222060	+		47060	32959	32646	32698	52417	52417					0.07760298736411642
LRHALLVIV	9	Unmodified	_LRHALLVIV_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3238525390625	2	517.347669	1032.68079	0.01897	9.8142E-06	-2.2453	-0.0011616	-2.2264	-0.0011518	517.3466965133571	64.093	0.3589	63.841	63.553	63.912	-0.2514					13	9	2	0	0	0	0.024506	1	7471	7471		38.806	12.01	1	125820	+		47061	28647;29046	32647	32699	52418	52418					0.16575195744530902
LRHCPLSFL	9	Unmodified	_LRHCPLSFL_					0	0	0			REV__ENSG00000224470|ENST00000427980|ATXN1L	REV__ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.302978515625	2	543.299862	1084.58517	1.1837	0.00064312	4.4873	0.002438	5.6711	0.0030811	543.3022819432259	74.333	1.4825	74.333	73.999	75.481	0					75	36	3	0	0	0	0.039744	1	9106	9106		133.81	11.637	1	9636800	+		47062	28860	32648	32700	52419	52419					0.046260995620059475
LRHCSAARGL	10	Unmodified	_LRHCSAARGL_					0	0	0		ENST00000476846.1_7:111503332-111846439:-|nuORF	ENST00000476846.1_7:111503332-111846439:-|nuORF	ENST00000476846.1_7:111503332-111846439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2958984375	2	542.295642	1082.57673	-0.40057	-0.00021723	-0.0051045	-2.7682E-06	-0.40567	-0.00021999	542.2955453600698	18.409	0.88302	18.277	17.86	18.743	-0.13147					43	17	3	0	0	0	1.1286	1	259	259		25.574	1.0549	1	666370			47063	15100	32649	32701	52420	52420					0.03874545645385297
LRHCSPITD	9	Unmodified	_LRHCSPITD_					0	0	0		DRP2|p.S759C|1|0.31|ENSG00000102385|chrX:101256147-101256147|C/G|missense_variant	DRP2|p.S759C|1|0.31|ENSG00000102385|chrX:101256147-101256147|C/G|missense_variant	DRP2|p.S759C|1|0.31|ENSG00000102385|chrX:101256147-101256147|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2684936523438	2	521.260933	1040.50731	-0.041603	-2.1686E-05	-4.1445	-0.0021604	-4.1861	-0.0021821	521.2587604538655	75.519	0.49529	75.26	74.863	75.358	-0.25866					17	11	2	0	0	0	0.024205	1	8928	8928		63.306	0	1	67095			47064	672	32650	32702	52421	52421					-0.011319580940380547
LRHDPDLHM	9	Unmodified	_LRHDPDLHM_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7977905273438	2	567.279657	1132.54476	-1.586	-0.00089973	-2.6008	-0.0014754	-4.1869	-0.0023751	567.2782959800953	83.627	0.5976	83.653	83.173	83.771	0.026558					19	13	2	0	0	0	0.024457	1	10316	10316		45.952	3.4775	1	108460			47065	9361	32651	32703	52422	52422					-0.016208668284207306
LRHEQLQLS	9	Unmodified	_LRHEQLQLS_					0	0	0			REV__ENSG00000115165|ENST00000264192|CYTIP	REV__ENSG00000115165|ENST00000264192|CYTIP	MSMS	OPSCC_39_ClassI_Rep-2	2	562.3145141601562	2	562.314554	1122.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.676	1	21.585	21.085	22.085	-0.090092								0	0	0	0.15405	1	680	680		80.455	0	1		+		47066	22172	32652	32704	52423	52423					0.05815335111856257
LRHEQLQLS	9	Unmodified	_LRHEQLQLS_					0	0	0			REV__ENSG00000115165|ENST00000264192|CYTIP	REV__ENSG00000115165|ENST00000264192|CYTIP	MSMS	OPSCC_39_ClassI_Rep-2	2	562.3143920898438	2	562.314554	1122.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.769	1	21.679	21.179	22.179	-0.090092								0	0	0	0.26342	1	692	692		70.816	0	1		+		47067	22172	32652	32704	52424	52424					0.05815335111856257
LRHEQLQLS	9	Unmodified	_LRHEQLQLS_					0	0	0			REV__ENSG00000115165|ENST00000264192|CYTIP	REV__ENSG00000115165|ENST00000264192|CYTIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3145141601562	2	562.314554	1122.61456	-0.83835	-0.00047142	0.61824	0.00034764	-0.22012	-0.00012378	562.3148376586181	21.546	1.3514	21.618	21.205	22.556	0.071487					76	27	4	0	0	0	0.247	2	643	643;654		82.75	0	1	1182900	+		47068	22172	32652	32704	52425;52426	52425					0.05815335111856257
LRHGTPLVY	9	Unmodified	_LRHGTPLVY_					0	0	0			REV__ENST00000478910.5_1_20:35127995-35128670:+|nuORF	REV__ENST00000478910.5_1_20:35127995-35128670:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3050537109375	2	528.303458	1054.59236	0.17143	9.0566E-05	4.328	0.0022865	4.4995	0.0023771	528.3056935468599	17.316	0.28369	17.174	17.084	17.368	-0.14278					6	5	2	0	0	0	1.0623	1	146	146		7.6903	0	1	38784	+		47069	33381	32653	32705	52427	52427					0.06725155434082808
LRHKPRET	8	Unmodified	_LRHKPRET_					0	0	0		ENSG00000204947|ENST00000378061|ZNF425	ENSG00000204947|ENST00000378061|ZNF425	ENSG00000204947|ENST00000378061|ZNF425	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7925415039062	2	518.804157	1035.59376	-0.47446	-0.00024615	3.8985	0.0020225	3.424	0.0017764	519.307957248592	52.016	0.80918	51.897	51.394	52.203	-0.11875					47	21	4	0	0	0	0.027866	1	5322	5322		31.955	7.7521	1	637340			47070	10394	32654	32706	52428	52428					0.07738789522841216
LRHLEVLN	8	Unmodified	_LRHLEVLN_					0	0	0		nc|ENSG00000285053|Q15813-2|TBCE;nc|ENSG00000285053|Q15813|TBCE;ENST00000472011.5_1_1:235582749-235612074:+|nuORF	nc|ENSG00000285053|Q15813-2|TBCE	nc|ENSG00000285053|Q15813-2|TBCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.294921875	2	497.295633	992.576714	-0.1863	-9.2648E-05	-0.035205	-1.7507E-05	-0.22151	-0.00011015	497.29536945073573	34.758	1.1281	34.758	34.479	35.608	0					56	29	5	0	0	0	0.77775	1	2624	2624		60.972	5.4677	1	1595200			47071	18813	32655	32707	52429	52429					0.08012868917035121
LRHRRIVRQRK	11	Unmodified	_LRHRRIVRQRK_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.71392822265625	3	506.662314	1516.96511	0.0041967	2.1263E-06	-1.4679	-0.00074373	-1.4637	-0.0007416	506.66248882957166	34.416	0.34154	34.191	33.997	34.339	-0.22412					12	8	3	0	0	0	0.024873	1	2506	2506		14.086	8.3872	1	356950	+		47072	19813	32656	32708	52430	52430					0.2273101428161226
LRICKKELF	9	Unmodified	_LRICKKELF_					0	0	0			REV__ENST00000551617.1_1_12:100599472-100601453:+|nuORF	REV__ENST00000551617.1_1_12:100599472-100601453:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	575.3462524414062	2	575.344269	1148.67399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.811	1	98.642	98.142	99.142	-0.16862								0	0	0	0.64206	1	12229	12229		32.812	3.6629	1		+		47073	34938	32657	32709	52431	52431					0.10559514801661862
LRIEAPSADL	10	Unmodified	_LRIEAPSADL_					0	0	0		AHNAK2|p.Q4514E|1|0.3|ENSG00000185567|chr14:104941911-104941911|G/C|missense_variant	AHNAK2|p.Q4514E|1|0.3|ENSG00000185567|chr14:104941911-104941911|G/C|missense_variant	AHNAK2|p.Q4514E|1|0.3|ENSG00000185567|chr14:104941911-104941911|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2576904296875	2	542.803488	1083.59242	-0.096825	-5.2557E-05	3.52	0.0019107	3.4231	0.0018581	542.8052854280013	47.201	0.76055	46.931	46.628	47.389	-0.26939					50	20	3	0	0	0	0.03519	1	4657	4657		40.778	17.736	1	1955500			47074	51	32658	32710	52432	52432					0.053971106434119065
LRIEAPSADL	10	Unmodified	_LRIEAPSADL_					0	0	0		AHNAK2|p.Q4514E|1|0.3|ENSG00000185567|chr14:104941911-104941911|G/C|missense_variant	AHNAK2|p.Q4514E|1|0.3|ENSG00000185567|chr14:104941911-104941911|G/C|missense_variant	AHNAK2|p.Q4514E|1|0.3|ENSG00000185567|chr14:104941911-104941911|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.803488	1083.59242	-1.0128	-0.00054975	4.3071	0.0023379	3.2943	0.0017882	542.8056583801185	47.017	0.8516	46.823	46.38	47.232	-0.19387	-0.033298	0.00044801	NaN	19.104	62	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1885400			47075	51	32658	32710							0.053971106434119065
LRIEHESI	8	Unmodified	_LRIEHESI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.24981689453125	2	498.777274	995.539994	0.038831	1.9368E-05	2.1095	0.0010522	2.1483	0.0010715	498.7780951225307	28.84	0.95608	28.921	28.289	29.245	0.080812					57	23	4	0	0	0	0.027866	1	1643	1643		63.306	10.37	1	857730	+		47076	28058	32659	32711	52433	52433					0.04204572300466225
LRIKLEKPP	9	Unmodified	_LRIKLEKPP_					0	0	0			REV__ENSG00000132510|ENST00000448097|KDM6B	REV__ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3271484375	2	547.358234	1092.70191	-0.37279	-0.00020405	3.8076	0.0020841	3.4348	0.0018801	547.3602003220494	41.249	0.37989	41.126	41.016	41.396	-0.12317					16	10	2	0	0	0	0.023417	1	3673	3673		79.451	20.669	1	233000	+		47077	23288	32660	32712	52434	52434					0.15927161053423333
LRILFWFG	8	Unmodified	_LRILFWFG_					0	0	0		nc|ENSG00000122490|Q8N2U9-3|SLC66A2;nc|ENSG00000122490|Q8N2U9-2|SLC66A2;ENSG00000122490|ENST00000397778|SLC66A2	nc|ENSG00000122490|Q8N2U9-3|SLC66A2	nc|ENSG00000122490|Q8N2U9-3|SLC66A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7550659179688	2	526.308013	1050.60147	1.128	0.00059368	3.8453	0.0020238	4.9733	0.0026175	526.3099050159118	36.86	0.67282	36.65	36.364	37.037	-0.2092					32	16	3	0	0	0	0.027866	1	2910	2910		8.8223	0	1	184360			47078	3927	32661	32713	52435	52435					0.07819548790394037
LRIPPSGKR	9	Unmodified	_LRIPPSGKR_					0	0	0			REV__ENST00000374530.7_2_9:112930921-112931080:+|nuORF	REV__ENST00000374530.7_2_9:112930921-112931080:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2249755859375	2	512.324725	1022.6349	-0.45577	-0.0002335	-3.5932	-0.0018409	-4.0489	-0.0020744	512.3229302707331	62.427	0.6608	62.489	62.401	63.062	0.062763					25	15	2	0	0	0	0.024367	1	7179	7179		52.937	27.487	1	871410	+		47079	31299	32662	32714	52436	52436					0.12448550562328364
LRIQEESVI	9	Unmodified	_LRIQEESVI_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2;REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2576904296875	2	543.811313	1085.60807	-0.15921	-8.6578E-05	0.418	0.00022731	0.25879	0.00014073	543.8119123149235	47.639	0.26389	47.369	47.125	47.389	-0.26939					9	6	2	0	0	0	0.024541	1	4657	4657		24.203	0	1	215910	+		47080	22264;36588	32663	32715	52437	52437					0.06869397160471635
LRIRETQV	8	Unmodified	_LRIRETQV_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2418518066406	2	507.806365	1013.59818	-0.10534	-5.3491E-05	0.19898	0.00010104	0.093645	4.7553E-05	507.80644271384296	36.62	0.32574	36.404	36.205	36.531	-0.21661					11	7	2	0	0	0	0.027866	1	2851	2851		44.117	12.162	1	97491	+		47081	25684	32664	32716	52438	52438					0.0919225394576415
LRIRVNKI	8	Unmodified	_LRIRVNKI_					0	0	0		DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant;ENSG00000157680|ENST00000614521|DGKI;nc|ENSG00000157680|O75912|DGKI	DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	DGKI|p.S924Lfs*11|1|0.33|ENSG00000157680|chr7:137444092-137444092|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3002014160156	2	506.342918	1010.67128	-0.58926	-0.00029837	-1.525	-0.0007722	-2.1143	-0.0010706	506.340085888995	32.345	0.1133	32.357	32.299	32.413	0.011799					4	2	2	0	0	0	0.027866	1	2222	2222		88.643	3.2834	1	28155			47082	635	32665	32717	52439	52439					0.16637427459022547
LRISGPPQ	8	Unmodified	_LRISGPPQ_					0	0	0			REV__ENSG00000179921|ENST00000519574|GPBAR1	REV__ENSG00000179921|ENST00000519574|GPBAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7786865234375	2	434.255977	866.497401	0.040488	1.7582E-05	0.28009	0.00012163	0.32058	0.00013921	434.2559259066851	36.645	1.2268	36.429	36.126	37.353	-0.21661					44	30	2	0	0	0	0.027866	1	2871	2871		29.15	0	1	3475100	+		47083	27303	32666	32718	52440	52440					0.05881221962908967
LRISVQQLH	9	Unmodified	_LRISVQQLH_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3267211914062	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.15029	1	4031	4031		99.375	0.74558	1	33183000			47084	3717	32667	32719	52441	52441					0.09776229354133648
LRISVQQLH	9	Unmodified	_LRISVQQLH_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3270874023438	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.18915	1	3755	3755		90.777	0.1758	1	35496000			47085	3717	32667	32719	52442	52442					0.09776229354133648
LRITLDCCL	9	Unmodified	_LRITLDCCL_					0	0	0		ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENST00000600689.1_1_19:18976320-18976969:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2542114257812	2	525.277738	1048.54092	-0.57012	-0.00029947	0.7337	0.0003854	0.16359	8.5928E-05	525.2787420780697	46.467	0.55114	46.264	45.855	46.406	-0.20226					23	14	3	0	0	0	0.024495	1	4408	4408		26.693	0	1	223190			47086	17502	32668	32720	52443	52443					0.01859327353486151
LRITLDCCL	9	Unmodified	_LRITLDCCL_					0	0	0		ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENST00000600689.1_1_19:18976320-18976969:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.277738	1048.54092	-0.15011	-7.8851E-05	2.3013	0.0012088	2.1512	0.00113	525.2787031463431	46.34	0.54923	46.243	45.923	46.473	-0.096649	-0.05661	0.00028857	NaN	26.693	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211890			47087	17502	32668	32720							0.01859327353486151
LRITLDCCL	9	Unmodified	_LRITLDCCL_					0	0	0		ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENST00000600689.1_1_19:18976320-18976969:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.277738	1048.54092	-0.16644	-8.7428E-05	2.3586	0.0012389	2.1921	0.0011515	525.2790575840171	46.653	0.37521	46.392	46.123	46.498	-0.26118	0.091909	0.00034873	NaN	26.693	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147470			47088	17502	32668	32720							0.01859327353486151
LRKAAGPL	8	Unmodified	_LRKAAGPL_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2685241699219	2	413.268887	824.523222	-0.68917	-0.00028481	0.61355	0.00025356	-0.075626	-3.1254E-05	413.2689993171392	43.579	0.56775	43.359	43.104	43.672	-0.21939					39	15	3	0	0	0	1.0574	1	4008	4008		21.702	1.2205	1	1964600			47089	38007	32669	32721	52444	52444					0.10394116205168302
LRKAAHGP	8	Unmodified	_LRKAAHGP_					0	0	0		nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	nc|ENSG00000171045|Q96NA8-2|TSNARE1	nc|ENSG00000171045|Q96NA8-2|TSNARE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.2562561035156	2	425.256311	848.49807	-0.16348	-6.9519E-05	0.38064	0.00016187	0.21716	9.2349E-05	425.2563848537095	35.471	0.94861	35.515	35.156	36.105	0.04406					41	24	2	0	0	0	1.0572	1	2682	2682		28.254	1.4582	1	2645600			47090	8105	32670	32722	52445	52445					0.06776061402604228
LRKAPDGLL	9	Unmodified	_LRKAPDGLL_					0	0	0			REV__ENSG00000130037|ENST00000252321|KCNA5	REV__ENSG00000130037|ENST00000252321|KCNA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.27923583984375	2	491.805834	981.597115	0.36918	0.00018157	-1.2236	-0.00060176	-0.85439	-0.00042019	491.8051999718343	59.956	0.48192	59.78	59.516	59.998	-0.1761					18	12	2	0	0	0	0.024506	1	6614	6614		23.042	1.0826	1	304380	+		47091	23076	32671	32723	52446	52446					0.10558039576847023
LRKCVDHPYL	10	Unmodified	_LRKCVDHPYL_					0	0	0		nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3358154296875	2	622.334433	1242.65431	0.63113	0.00039278	2.7314	0.0016999	3.3626	0.0020927	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.1307	1	13497	13497		26.693	2.4902	1	1535400			47092	4549	32672	32724	52447	52447					0.042691387909144396
LRKDGILV	8	Unmodified	_LRKDGILV_					0	0	0		nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C;ENST00000457807.5_1_21:33873793-33887497:+|nuORF;ENST00000464037.5_1_21:33825516-33887497:+|nuORF	nc|ENSG00000166979|P58658-3|EVA1C	nc|ENSG00000166979|P58658-3|EVA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2952880859375	2	457.295102	912.575651	0.38177	0.00017458	-0.37654	-0.00017219	0.005228	2.3907E-06	457.2948357622591	55.981	0.77892	55.981	55.61	56.388	0					62	21	4	0	0	0	0.37125	1	6223	6223		101.21	7.2051	1	6219700			47093	7638	32673	32725	52448	52448					0.11586654548125352
LRKDGILV	8	Unmodified	_LRKDGILV_					0	0	0		nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C;ENST00000457807.5_1_21:33873793-33887497:+|nuORF;ENST00000464037.5_1_21:33825516-33887497:+|nuORF	nc|ENSG00000166979|P58658-3|EVA1C	nc|ENSG00000166979|P58658-3|EVA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.29547119140625	2	457.295102	912.575651	-0.1327	-6.0685E-05	0.13616	6.2265E-05	0.0034546	1.5798E-06	457.29508557830275	56.119	0.76651	55.963	55.554	56.321	-0.15601					62	20	4	0	0	0	0.39824	1	6207	6207		97.473	5.2821	1	6013900			47094	7638	32673	32725	52449	52449					0.11586654548125352
LRKDGILV	8	Unmodified	_LRKDGILV_					0	0	0		nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C;ENST00000457807.5_1_21:33873793-33887497:+|nuORF;ENST00000464037.5_1_21:33825516-33887497:+|nuORF	nc|ENSG00000166979|P58658-3|EVA1C	nc|ENSG00000166979|P58658-3|EVA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.29541015625	2	457.295102	912.575651	-0.48825	-0.00022327	0.3309	0.00015132	-0.15735	-7.1956E-05	457.2952369593063	55.851	0.91164	55.948	55.561	56.473	0.097893					69	24	4	0	0	0	0.21202	1	6102	6102		138.48	18.923	1	6402600			47095	7638	32673	32725	52450	52450					0.11586654548125352
LRKEINNL	8	Unmodified	_LRKEINNL_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.30084228515625	2	500.300916	998.587279	-0.45741	-0.00022884	-0.39514	-0.00019769	-0.85255	-0.00042653	500.3005740004996	32.661	0.64093	32.661	32.3	32.941	0					48	16	4	0	0	0	0.77775	1	2280	2280		60.972	0	1	7413600			47096	4583	32674	32726	52451	52451					0.08792851571456595
LRKEINNL	8	Unmodified	_LRKEINNL_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.30084228515625	2	500.300916	998.587279	-0.59248	-0.00029642	-0.36178	-0.000181	-0.95426	-0.00047742	500.30058323314984	32.528	0.55827	32.54	32.26	32.818	0.011799					38	14	3	0	0	0	0.53523	1	2246	2246		82.305	0	1	7515500			47097	4583	32674	32726	52452	52452					0.08792851571456595
LRKFRKIDY	9	Unmodified	_LRKFRKIDY_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	620.3709106445312	2	619.87204	1237.72953	0.088081	5.4599E-05	-3.7317	-0.0023132	-3.6436	-0.0022586	619.8693858580326	97.1	1.0703	96.976	96.661	97.732	-0.12368					46	23	3	0	0	0	0.99229	1	12049	12049		21.96	1.013	1	190550			47098	14277	32675	32727	52453	52453					0.1201706431365892
LRKGGPQN	8	Unmodified	_LRKGGPQN_					0	0	0			REV__nc|ENSG00000099958|Q96Q80-5|DERL3	REV__nc|ENSG00000099958|Q96Q80-5|DERL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.25213623046875	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.0239	1	9602	9602		33.516	1.5607	1	1590300	+		47099	21026	32676	32728	52454	52454					0.048394536773685104
LRKGYKTV	8	Unmodified	_LRKGYKTV_					0	0	0		ZNF429|p.C123Y|1|0.08|ENSG00000197013|chr19:21536421-21536421|G/A|missense_variant;ENSG00000197013|ENST00000358491|ZNF429	ZNF429|p.C123Y|1|0.08|ENSG00000197013|chr19:21536421-21536421|G/A|missense_variant	ZNF429|p.C123Y|1|0.08|ENSG00000197013|chr19:21536421-21536421|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.8005065917969	2	482.800552	963.58655	0.93477	0.00045131	-1.0631	-0.00051327	-0.12835	-6.1968E-05	482.7998860594238	19.977	0.78259	19.754	19.533	20.315	-0.22344					36	15	4	0	0	0	0.97924	1	472	472		40.573	3.4135	1	625170			47100	9943	32677	32729	52455	52455					0.10330056922418862
LRKIVNGT	8	Unmodified	_LRKIVNGT_					0	0	0		ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2745056152344	2	450.784902	899.55525	-0.16803	-7.5743E-05	2.4267	0.0010939	2.2587	0.0010182	450.7860140211205	92.364	0.23856	92.242	92.102	92.341	-0.12242					7	5	2	0	0	0	0.027866	1	11367	11367		12.959	0	1	166420			47101	10713	32678	32730	52456	52456					0.10145483888334184
LRKKAACI	8	Unmodified	_LRKKAACI_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.76904296875	2	451.783847	901.553142	0.049694	2.2451E-05	1.2543	0.00056668	1.304	0.00058913	451.78433383557484	27.548	0.21663	27.306	27.119	27.335	-0.24217					5	4	2	0	0	0	0.027866	1	1514	1514		37.028	11.578	1	31166			47102	3254	32679	32731	52457	52457					0.09842731878859468
LRKKEQKEL	9	Unmodified	_LRKKEQKEL_					0	0	0			REV__ENST00000490753.1_1_20:2637050-2637903:+|nuORF	REV__ENST00000490753.1_1_20:2637050-2637903:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.361328125	2	586.361505	1170.70846	0.73019	0.00042815	-0.90722	-0.00053196	-0.17703	-0.00010381	586.3608731288323	17.935	0.44537	17.781	17.607	18.052	-0.15403					22	8	4	0	0	0	0.42604	1	240	240		64.207	7.4862	1	175440	+		47103	21226	32680	32732	52458	52458					0.1299305421414374
LRKKPDLV	8	Unmodified	_LRKKPDLV_					0	0	0			REV__ENSG00000152495|ENST00000282356|CAMK4	REV__ENSG00000152495|ENST00000282356|CAMK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.8163146972656	2	484.816202	967.617851	0.054416	2.6382E-05	0.15445	7.488E-05	0.20887	0.00010126	484.81611620956477	34.203	0.69894	33.978	33.68	34.379	-0.22412					49	17	4	0	0	0	0.75307	1	2503	2503		62.978	2.6845	1	2288700	+		47104	24846	32681	32733	52459	52459					0.13274629956504214
LRKMELLLKV	10	Unmodified	_LRKMELLLKV_					0	0	0		CCDC146|p.Y913*|1|0.08|ENSG00000135205|chr7:77294736-77294742|ACATCCC/-|frameshift_variant;ENSG00000135205|ENST00000285871|CCDC146;nc|ENSG00000135205|Q8IYE0-2|CCDC146	CCDC146|p.Y913*|1|0.08|ENSG00000135205|chr7:77294736-77294742|ACATCCC/-|frameshift_variant	CCDC146|p.Y913*|1|0.08|ENSG00000135205|chr7:77294736-77294742|ACATCCC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.9000854492188	2	621.901951	1241.78935	-0.47748	-0.00029695	-1.3021	-0.00080976	-1.7796	-0.0011067	621.9008995623008	105.33	0.39741	105.32	105.12	105.52	-0.0015945					28	11	3	0	0	0	1.1217	1	13460	13460		21.96	1.013	1	1660400			47105	225	32682	32734	52460	52460					0.17812618932657642
LRKNTEALL	9	Unmodified	_LRKNTEALL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3007202148438	2	529.321848	1056.62914	-1.3886	-0.00073503	1.0794	0.00057137	-0.30918	-0.00016366	529.3218008653834	38.838	0.94264	38.673	38.437	39.379	-0.16459					47	25	3	0	0	0	0.024523	1	3226	3226		37.159	8.0096	1	1408400			47106	3387	32683	32735	52461	52461					0.10309407260001535
LRKPLRLNRF	10	Unmodified	_LRKPLRLNRF_					0	0	0			REV__nc|ENSG00000114650|Q12770-4|SCAP	REV__nc|ENSG00000114650|Q12770-4|SCAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.24700927734375	3	438.282329	1311.82516	0.035565	1.5588E-05	-1.6105	-0.00070584	-1.5749	-0.00069025	438.2819650081926	26.846	0.12566	26.846	26.741	26.867	0					4	2	2	0	0	0	0.03519	1	1410	1410		21.686	7.4425	1	7833.9	+		47107	22134	32684	32736	52462	52462					0.18171837224531373
LRKQEESVQ	9	Unmodified	_LRKQEESVQ_					0	0	0		ENSG00000160072|ENST00000673477|ATAD3B;ATAD3A|p.R534Efs*5|1|0.18|ENSG00000197785|chr1:1527811-1527812|-/G|frameshift_variant;nc|ENSG00000197785|Q9NVI7-3|ATAD3A;ENSG00000197785|ENST00000378756|ATAD3A;nc|ENSG00000160072|Q5T9A4-3|ATAD3B;ENST00000472194.6_1_1:1413873-1431194:+|nuORF;nc|ENSG00000197785|Q9NVI7|ATAD3A;ENSG00000215915|ENST00000378785|ATAD3C;nc|ENSG00000160072|Q5T9A4-2|ATAD3B	ENSG00000160072|ENST00000673477|ATAD3B	ENSG00000160072|ENST00000673477|ATAD3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.80322265625	2	558.80402	1115.59349	-0.98254	-0.00054905	0.21159	0.00011824	-0.77094	-0.00043081	558.8040956722554	48.808	1.0189	48.707	48.358	49.377	-0.1008					79	26	5	0	0	0	0.53979	1	4864	4864		56.721	1.9987	1	7840100			47108	6778	32685	32737	52463	52463					0.040313250123290345
LRKRIVGM	8	Unmodified	_LRKRIVGM_					0	0	0			REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF	REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7945556640625	2	486.810396	971.60624	-0.55781	-0.00027155	0.48128	0.00023429	-0.07653	-3.7256E-05	486.81091101702555	28.356	0.21679	28.352	28.199	28.416	-0.0042019					6	4	2	0	0	0	0.027866	1	1623	1623		37.028	7.1869	1	20859	+		47109	27435	32686	32738	52464	52464					0.11930109661523147
LRKRPPGLFP	10	Unmodified	_LRKRPPGLFP_					0	0	0			REV__ENSG00000121067|ENST00000504102|SPOP;REV__ENST00000572686.1_1_17:47677742-47677928:-|nuORF	REV__ENSG00000121067|ENST00000504102|SPOP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.8665161132812	2	590.8693	1179.72405	-0.15177	-8.9679E-05	-4.4086	-0.0026049	-4.5604	-0.0026946	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931					85	41	5	0	0	0	1.1259	1	12757	12757		24.203	1.6231	1	5173900	+		47110	22578;35427	32687	32739	52465	52465					0.14137385521826218
LRKRRRKMRRT	11	Unmodified	_LRKRRRKMRRT_					0	0	0		ENST00000463639.1_1_6:32945663-32945765:+|nuORF	ENST00000463639.1_1_6:32945663-32945765:+|nuORF	ENST00000463639.1_1_6:32945663-32945765:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8226318359375	3	519.667071	1555.97938	-0.86952	-0.00045186	1.6075	0.00083537	0.73799	0.00038351	520.0014276910049	81.208	0.367	81.208	81.097	81.464	0					13	8	2	0	0	0	0.024902	1	10148	10148		1.4188	1.0473	1	47853			47111	14737	32688	32740	52466	52466					0.22363343438246375
LRKRRRRGWSC	11	Unmodified	_LRKRRRRGWSC_					0	0	0		ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2772521972656	3	491.952989	1472.83714	0.75975	0.00037376	1.2099	0.0005952	1.9696	0.00096896	492.2892652716274	40.595	0.21084	40.478	40.343	40.554	-0.11641					9	5	2	0	0	0	0.02486	1	3544	3544		17.833	8.187	1	87481			47112	15204	32689	32741	52467	52467					0.119631306960855
LRKSALTKT	9	Unmodified	_LRKSALTKT_					0	0	0			REV__nc|ENSG00000086200|Q9UI26-2|IPO11	REV__nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3050842285156	2	509.324391	1016.63423	0.37515	0.00019107	-0.77795	-0.00039623	-0.4028	-0.00020515	509.32383970868426	22.153	0.3322	21.965	21.769	22.102	-0.18894					12	6	2	0	0	0	0.024541	1	770	770		30.318	20.052	1	55465	+		47113	20769	32690	32742	52468	52468					0.12657711122596993
LRKTIHLAYD	10	Unmodified	_LRKTIHLAYD_					0	0	0			REV__ENSG00000072657|ENST00000261180|TRHDE	REV__ENSG00000072657|ENST00000261180|TRHDE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.5717468261719	3	410.571545	1228.69281	0.94091	0.00038631	-0.223	-9.1559E-05	0.71791	0.00029475	410.9059087564277	17.595	0.42202	17.453	17.229	17.651	-0.14278					12	8	2	0	0	0	1.1117	1	185	185		16.717	2.0237	1	28429	+		47114	20476	32691	32743	52469	52469					0.0876076769707197
LRKTKAGSSV	10	Unmodified	_LRKTKAGSSV_					0	0	0			REV__ENST00000262738.7_1_22:46758356-46758458:-|nuORF	REV__ENST00000262738.7_1_22:46758356-46758458:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.3078002929688	2	523.819473	1045.62439	0.089663	4.6967E-05	2.9409	0.0015405	3.0306	0.0015875	523.8209628394088	71.274	0.83899	71.017	70.607	71.446	-0.25713					27	19	2	0	0	0	0.03519	1	8369	8369		40.778	0	1	263100	+		47115	29671	32692	32744	52470	52470					0.1034052311722462
LRKTYRAP	8	Unmodified	_LRKTYRAP_					0	0	0		ENSG00000172139|ENST00000305815|SLC9C1;nc|ENSG00000172139|Q4G0N8-2|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	ENSG00000172139|ENST00000305815|SLC9C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.282470703125	2	502.803626	1003.5927	-2.1895	-0.0011009	0.33046	0.00016616	-1.8591	-0.00093475	502.8037653650505	52.047	0.61758	51.777	51.4	52.018	-0.26903					22	15	2	0	0	0	0.027866	1	5326	5326		47.916	15.103	1	372550			47116	8244	32693	32745	52471	52471					0.09104575153924088
LRKVAVEKF	9	Unmodified	_LRKVAVEKF_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2824096679688	2	545.342584	1088.67061	0.17303	9.4363E-05	1.486	0.00081038	1.659	0.00090474	545.3434304149149	51.074	0.18939	50.797	50.627	50.816	-0.27643					7	4	2	0	0	0	0.024523	1	5205	5205		21.96	12.254	1	254200			47117	5230	32694	32746	52472	52472					0.12982588019326613
LRKVLALE	8	Unmodified	_LRKVLALE_					0	0	0			REV__ENST00000540837.1_12:9097984-9102109:-|nuORF	REV__ENST00000540837.1_12:9097984-9102109:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.81121826171875	2	471.310752	940.606951	0.92125	0.0004342	-0.59013	-0.00027813	0.33113	0.00015606	471.31011388158834	19.682	0.54363	19.448	19.226	19.769	-0.23345					21	10	3	0	0	0	0.027866	1	401	401		28.254	0	1	272210	+		47118	19769	32695	32747	52473	52473					0.13427227582212709
LRKWIRGR	8	Unmodified	_LRKWIRGR_					0	0	0			REV__ENST00000579431.1_1_18:19747671-19748025:-|nuORF	REV__ENST00000579431.1_1_18:19747671-19748025:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.8146362304688	2	542.846159	1083.67777	-1.1871	-0.00064442	-1.0999	-0.00059707	-2.287	-0.0012415	542.8454644434522	29.91	0.36492	29.919	29.677	30.042	0.0086689					13	8	2	0	0	0	0.027866	1	1870	1870		35.201	22.994	1	41503	+		47119	35504	32696	32748	52474	52474					0.1392736541040449
LRLAIDWV	8	Unmodified	_LRLAIDWV_					0	0	0		ENST00000378204.6_1_8:119123393-119123786:-|nuORF	ENST00000378204.6_1_8:119123393-119123786:-|nuORF	ENST00000378204.6_1_8:119123393-119123786:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.29595947265625	2	493.295102	984.575651	-0.2265	-0.00011173	-3.7294	-0.0018397	-3.9559	-0.0019514	493.2931315202299	19.796	0.6683	19.678	19.397	20.066	-0.11872					35	13	4	0	0	0	0.91239	1	461	461		50.025	5.9077	1	630850			47120	13232	32697	32749	52475	52475					0.08274654548131366
LRLENLQSL	9	Unmodified	_LRLENLQSL_					0	0	0			REV__nc|ENSG00000177125|Q8NCN2|ZBTB34	REV__nc|ENSG00000177125|Q8NCN2|ZBTB34	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3192138671875	2	543.319306	1084.62406	1.156	0.00062806	-1.6846	-0.00091529	-0.52866	-0.00028723	543.3183534306464	59.18	0.6469	58.993	58.684	59.331	-0.18705					57	17	4	0	0	0	0.077175	1	6725	6725		118.74	1.8395	1	10479000	+		47121	27084	32698	32750	52476	52476					0.08513103397376653
LRLEPKWL	8	Unmodified	_LRLEPKWL_					0	0	0			REV__ENST00000332035.10_1_22:29694873-29695274:+|nuORF	REV__ENST00000332035.10_1_22:29694873-29695274:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.8219604492188	2	527.824027	1053.6335	-1.3084	-0.00069059	-3.1897	-0.0016836	-4.4981	-0.0023742	527.8223055563183	32.773	0.71934	32.773	32.531	33.251	0					54	18	4	0	0	0	0.97924	1	2319	2319		40.573	4.9543	1	2343600	+		47122	30486	32699	32751	52477	52477					0.10882916473542537
LRLFEEQEKKQ	11	Unmodified	_LRLFEEQEKKQ_					0	0	0			REV__ENST00000502975.1_1_5:114605354-114607176:-|nuORF	REV__ENST00000502975.1_1_5:114605354-114607176:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.8005065917969	3	483.268302	1446.78308	1.1723	0.00056654	-1.1022	-0.00053267	0.070085	3.387E-05	483.267019968857	19.795	0.58875	19.561	19.374	19.963	-0.23345					19	11	3	0	0	0	0.024797	1	472	472		25.892	4.1113	1	39104	+		47123	25720	32700	32752	52478	52478					0.07755772234827418
LRLFGPLLN	9	Unmodified	_LRLFGPLLN_					0	0	0			REV__ENST00000485726.1_1_7:103828364-103848439:-|nuORF	REV__ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3245239257812	2	521.824027	1041.6335	-0.18122	-9.4564E-05	2.1193	0.0011059	1.9381	0.0010113	521.8250964801371	49.73	0.95294	49.578	49.078	50.031	-0.1512					68	25	3	0	0	0	0.024205	1	5131	5131		73.975	26.059	1	4397500	+		47124	25805	32701	32753	52479	52479					0.11434916473581325
LRLGFEASAE	10	Unmodified	_LRLGFEASAE_					0	0	0			REV__ENST00000367241.3_1_6:153296752-153304655:-|nuORF	REV__ENST00000367241.3_1_6:153296752-153304655:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2893676757812	2	546.787838	1091.56112	0.1215	6.6433E-05	-0.48125	-0.00026314	-0.35976	-0.00019671	547.2889294285575	57.179	0.87728	56.977	56.443	57.32	-0.20209					68	23	4	0	0	0	1.0122	1	6252	6252		44.377	0.75114	1	2646700	+		47125	31010	32702	32754	52480	52480					0.01900537609321873
LRLGKLSCS	9	Unmodified	_LRLGKLSCS_					0	0	0			REV__ENST00000483748.5_1_15:42134789-42134993:+|nuORF	REV__ENST00000483748.5_1_15:42134789-42134993:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.27056884765625	2	488.784044	975.553536	-0.73584	-0.00035967	-2.7048	-0.0013221	-3.4407	-0.0016818	488.7824434995443	39.073	1.5574	38.974	38.133	39.69	-0.098751					79	42	3	0	0	0	0.024263	1	3295	3295		34.173	3.6689	1	1030000	+		47126	33518	32703	32755	52481	52481					0.06478106808060602
LRLGYEEN	8	Unmodified	_LRLGYEEN_					0	0	0			REV__nc|ENSG00000104067|Q07157|TJP1;REV__nc|ENSG00000119139|Q9UDY2-6|TJP2	REV__nc|ENSG00000104067|Q07157|TJP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.82122802734375	2	497.253631	992.49271	0.56848	0.00028268	-0.7287	-0.00036235	-0.16022	-7.9669E-05	497.25254217272237	42.344	0.62233	42.344	42.02	42.642	0					35	17	4	0	0	0	0.027866	1	3881	3881		35.201	0	1	176540	+		47127	21416;22442	32704	32756	52482	52482					-0.003837069705241447
LRLIDPQT	8	Unmodified	_LRLIDPQT_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3002014160156	2	478.282192	954.549831	-0.020352	-9.734E-06	0.16625	7.9512E-05	0.14589	6.9778E-05	478.2822140881634	73.078	0.70194	73.088	72.777	73.479	0.0096512					48	17	3	0	0	0	0.027866	1	8793	8793		93.195	0	1	861460			47128	4974	32705	32757	52483	52483					0.07073760305831911
LRLILFTF	8	Unmodified	_LRLILFTF_					0	0	0			REV__ENSG00000277932|ENST00000610445|OR52E5	REV__ENSG00000277932|ENST00000610445|OR52E5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2810974121094	2	511.823495	1021.63244	-0.48291	-0.00024716	-4.2052	-0.0021523	-4.6881	-0.0023995	511.8210722806228	62.292	1.1824	62.052	61.212	62.394	-0.23926					76	33	3	0	0	0	0.027866	1	7099	7099		42.474	3.453	1	1958600	+		47129	29210	32706	32758	52484	52484					0.12248702104659515
LRLKECLE	8	Unmodified	_LRLKECLE_					0	0	0		ENST00000471370.5_1_12:58007928-58008279:+|nuORF	ENST00000471370.5_1_12:58007928-58008279:+|nuORF	ENST00000471370.5_1_12:58007928-58008279:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.28106689453125	2	502.283877	1002.5532	-0.72105	-0.00036217	-2.348	-0.0011794	-3.0691	-0.0015415	502.282586518804	58.117	0.97614	57.942	57.684	58.66	-0.1749					44	26	3	0	0	0	0.6248	1	6528	6528		73.975	0	1	4183400			47130	14956	32707	32759	52485	52485					0.052026870882059484
LRLKQGTGRYE	11	Unmodified	_LRLKQGTGRYE_					0	0	0			REV__ENST00000576846.1_1_17:7530144-7530450:-|nuORF	REV__ENST00000576846.1_1_17:7530144-7530450:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.7876281738281	3	440.917604	1319.73098	-0.41968	-0.00018504	0.5152	0.00022716	0.095517	4.2115E-05	440.9177115206884	41.701	0.72881	41.473	41.044	41.773	-0.2278					42	18	3	0	0	0	0.024723	1	3643	3643		31.068	16.982	1	171690	+		47131	35471	32708	32760	52486	52486					0.08390653611786547
LRLLDYNS	8	Unmodified	_LRLLDYNS_					0	0	0			REV__sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	REV__sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7978515625	2	497.271824	992.529095	-0.53533	-0.0002662	-0.43058	-0.00021412	-0.96591	-0.00048032	497.27184733910383	34.114	0.36722	34.164	33.925	34.292	0.050255					18	8	3	0	0	0	0.027866	1	2454	2454		29.15	0	1	145600	+		47132	37548	32709	32761	52487	52487					0.032531699261767244
LRLLEELEDT	10	Unmodified	_LRLLEELEDT_					0	0	0		ENST00000570395.1_1_16:53844054-53848662:+|nuORF;ENSG00000140718|ENST00000471389|FTO	ENST00000570395.1_1_16:53844054-53848662:+|nuORF	ENST00000570395.1_1_16:53844054-53848662:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.8915710449219	3	410.890721	1229.65033	-0.50817	-0.0002088	-3.8931	-0.0015996	-4.4013	-0.0018084	410.8892469137177	28.075	1.5544	27.906	27.649	29.203	-0.16897					100	36	4	0	0	0	0.03519	1	1663	1663		36.318	0	1	3372600			47133	5439	32710	32762	52488	52488					0.044693277782016594
LRLLFAKMN	9	Unmodified	_LRLLFAKMN_					0	0	0		ENSG00000119636|ENST00000394009|BBOF1;ENST00000492026.4_1_14:74507337-74544940:+|nuORF;ENST00000492247.3_1_14:74522272-74524078:+|nuORF	ENSG00000119636|ENST00000394009|BBOF1;ENST00000492247.3_1_14:74522272-74524078:+|nuORF	ENST00000492247.3_1_14:74522272-74524078:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.332275390625	2	553.331162	1104.64777	-0.4027	-0.00022283	2.6291	0.0014548	2.2264	0.001232	553.332456575769	95.559	1.4151	95.408	95.012	96.427	-0.15186					99	32	5	0	0	0	0.92825	1	11761	11761		30.504	1.3541	1	3966700			47134	3749;15479	32711	32763	52489	52489					0.09963245630206075
LRLLKTLET	9	Unmodified	_LRLLKTLET_					0	0	0		ENSG00000166896|ENST00000300145|ATP23;ENST00000551997.1_1_12:58335577-58345541:+|nuORF	ENSG00000166896|ENST00000300145|ATP23	ENSG00000166896|ENST00000300145|ATP23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7905883789062	2	543.847699	1085.68084	-2.1178	-0.0011517	1.0864	0.00059085	-1.0313	-0.0005609	543.8479692672321	49.32	0.74379	49.394	49.169	49.912	0.074196					45	19	3	0	0	0	0.024447	1	5023	5023		32.812	0.85756	1	717830			47135	7623	32712	32764	52490	52490					0.1414315095389611
LRLLLPGKP	9	Unmodified	_LRLLLPGKP_					0	0	0		ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant	ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7869567871094	2	503.84222	1005.66989	-1.0793	-0.00054381	-0.77502	-0.00039049	-1.8543	-0.00093429	504.34300837342016	37.69	0.1157	37.47	37.39	37.506	-0.2195					4	2	2	0	0	0	0.024541	1	3039	3039		17.365	0	1	52634			47136	126	32713	32765	52491	52491					0.16727793370273503
LRLLQECLT	9	Unmodified	_LRLLQECLT_					0	0	0		ENSG00000275074|ENST00000611621|NUDT18;nc|ENSG00000275074|Q6ZVK8-2|NUDT18	ENSG00000275074|ENST00000611621|NUDT18	ENSG00000275074|ENST00000611621|NUDT18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7905883789062	2	544.810259	1087.60597	-1.7284	-0.00094167	-1.1726	-0.00063885	-2.901	-0.0015805	544.8095030839669	49.548	0.78893	49.623	49.352	50.141	0.074196					43	21	4	0	0	0	0.024436	1	5023	5023		23.042	0	1	758460			47137	11036	32714	32766	52492	52492					0.06566645150996919
LRLLRQRKD	9	Unmodified	_LRLLRQRKD_					0	0	0		ENSG00000134769|ENST00000444659|DTNA;nc|ENSG00000134769|Q9Y4J8|DTNA;nc|ENSG00000134769|Q9Y4J8-15|DTNA;nc|ENSG00000134769|Q9Y4J8-14|DTNA;nc|ENSG00000134769|Q9Y4J8-2|DTNA;nc|ENSG00000134769|Q9Y4J8-13|DTNA;nc|ENSG00000134769|Q9Y4J8-16|DTNA;nc|ENSG00000134769|Q9Y4J8-5|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;nc|ENSG00000134769|Q9Y4J8-12|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000138101|O60941-4|DTNB;ENSG00000138101|ENST00000406818|DTNB;ASXL2-DTNB|4|fusion;nc|ENSG00000138101|O60941-7|DTNB;ASXL2-DTNB|2|fusion;ASXL2-DTNB|3|fusion;ASXL2-DTNB|6|fusion;nc|ENSG00000134769|Q9Y4J8-8|DTNA;ASXL2-DTNB|7|fusion;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-3|DTNB;ASXL2-DTNB|1|fusion;nc|ENSG00000138101|O60941-6|DTNB;ASXL2-DTNB|5|fusion;nc|ENSG00000134769|Q9Y4J8-11|DTNA;nc|ENSG00000134769|Q9Y4J8-10|DTNA;nc|ENSG00000134769|Q9Y4J8-6|DTNA;nc|ENSG00000138101|O60941-2|DTNB	ENSG00000134769|ENST00000444659|DTNA	ENSG00000134769|ENST00000444659|DTNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	599.3797607421875	2	599.380563	1196.74657	-1.7115	-0.0010259	0.88076	0.00052791	-0.83079	-0.00049796	599.3810159995093	102.25	0.69998	102.25	101.99	102.69	0					52	15	5	0	0	0	0.98128	1	13111	13111		24.203	2.517	1	1093900			47138	4827	32715	32767	52493	52493					0.15606984919440947
LRLPAVPSI	9	Unmodified	_LRLPAVPSI_					0	0	0		nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4;nc|ENSG00000189013|Q99706-6|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.3109436035156	2	483.310752	964.606951	-0.29481	-0.00014249	0.77673	0.0003754	0.48192	0.00023292	483.31087963617847	67.189	0.98432	67.213	66.728	67.712	0.023911					73	23	4	0	0	0	0.53979	1	7934	7934		56.721	3.3696	1	2301100			47139	9780	32716	32768	52494	52494					0.12323227582214713
LRLPPKDF	8	Unmodified	_LRLPPKDF_					0	0	0			REV__nc|ENSG858|P60608|ERVFC1-1	REV__nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.29351806640625	2	493.295102	984.575651	-0.2265	-0.00011173	-3.7294	-0.0018397	-3.9559	-0.0019514	493.2931315202299	19.796	0.6683	19.678	19.397	20.066	-0.11872					35	13	4	0	0	0	0.81662	1	447	447		57.811	4.4598	1	630850	+		47140	37254	32717	32769	52495	52495					0.08274654548131366
LRLPYPPR	8	Unmodified	_LRLPYPPR_					0	0	0		ENST00000402690.6_3_18:45423156-45457422:-|nuORF	ENST00000402690.6_3_18:45423156-45457422:-|nuORF	ENST00000402690.6_3_18:45423156-45457422:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.78826904296875	2	506.308544	1010.60253	-0.21738	-0.00011006	0.49534	0.00025079	0.27796	0.00014073	506.81042807091933	47.028	0.51666	47.028	46.772	47.289	0					20	13	2	0	0	0	0.027866	1	4652	4652		38.806	19.446	1	123820			47141	13687	32718	32770	52496	52496					0.0976576315931652
LRLQLEPQ	8	Unmodified	_LRLQLEPQ_					0	0	0			REV__ENST00000533406.2_1_11:124085485-124086391:+|nuORF	REV__ENST00000533406.2_1_11:124085485-124086391:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7951354980469	2	498.795466	995.57638	0.57462	0.00028662	-0.88539	-0.00044163	-0.31077	-0.00015501	498.7949531899924	58.465	1.0957	58.465	57.835	58.93	0					54	29	3	0	0	0	0.53593	1	6615	6615		82.241	5.4664	1	3118200	+		47142	34602	32719	32771	52497	52497					0.07841449197178463
LRLQQLEP	8	Unmodified	_LRLQQLEP_					0	0	0			REV__ENSG00000205927|ENST00000382357|OLIG2	REV__ENSG00000205927|ENST00000382357|OLIG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7967224121094	2	498.795466	995.57638	0.12946	6.4576E-05	-0.48239	-0.00024062	-0.35293	-0.00017604	498.7951140358253	58.67	0.79811	58.483	58.173	58.971	-0.18705					44	21	3	0	0	0	0.65272	1	6637	6637		71.378	4.9486	1	3092700	+		47143	28697	32720	32772	52498	52498					0.07841449197178463
LRLRLEDS	8	Unmodified	_LRLRLEDS_					0	0	0		nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-4|AKNA;nc|ENSG00000106948|Q7Z591-5|AKNA;nc|ENSG00000106948|Q7Z591-8|AKNA	nc|ENSG00000106948|Q7Z591-7|AKNA	nc|ENSG00000106948|Q7Z591-7|AKNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2903137207031	2	501.290548	1000.56654	-0.41083	-0.00020595	0.019509	9.7795E-06	-0.39133	-0.00019617	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	1.0239	1	10370	10370		33.516	1.5607	1	2038300			47144	2820	32721	32773	52499	52499					0.06628261191804086
LRLSAKPASE	10	Unmodified	_LRLSAKPASE_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2931518554688	2	536.31148	1070.60841	-1.0348	-0.00055496	0.074226	3.9808E-05	-0.96054	-0.00051515	536.3114752791118	44.913	0.79048	44.913	44.519	45.31	0					50	22	3	0	0	0	0.03519	1	4261	4261		31.53	11.533	1	2310000	+		47145	20560	32722	32774	52500	52500					0.07592816880310238
LRLSLEKY	8	Unmodified	_LRLSLEKY_					0	0	0			REV__ENST00000368636.8_2_10:133781379-133781460:-|nuORF	REV__ENST00000368636.8_2_10:133781379-133781460:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7609558105469	2	511.305667	1020.59678	3.7159	0.0019	-1.5654	-0.00080039	2.1505	0.0010996	511.30448791411516	18.02	0.29742	17.778	17.627	17.924	-0.24256					6	5	2	0	0	0	0.027866	1	213	213		15.642	0	1	7902.5	+		47146	31058	32723	32775	52501	52501					0.08730619856987687
LRLSRLKP	8	Unmodified	_LRLSRLKP_					0	0	0			REV__nc|ENSG00000135503|P36896-4|ACVR1B	REV__nc|ENSG00000135503|P36896-4|ACVR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.8299255371094	2	491.829643	981.644734	-0.13038	-6.4124E-05	-0.0029212	-1.4367E-06	-0.1333	-6.5561E-05	491.82958822725203	25.851	1.303	25.68	25.288	26.591	-0.17078					79	34	4	0	0	0	0.6248	2	1259	1249;1259		73.975	8.1716	1	5567500	+		47147	36690	32724	32776	52502;52503	52503					0.1531773856770542
LRLSRLKP	8	Unmodified	_LRLSRLKP_					0	0	0			REV__nc|ENSG00000135503|P36896-4|ACVR1B	REV__nc|ENSG00000135503|P36896-4|ACVR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.82940673828125	2	491.829643	981.644734	-0.94863	-0.00046656	0.49347	0.0002427	-0.45515	-0.00022386	491.82977338378083	26.034	1.2943	25.871	25.414	26.708	-0.16331					95	34	4	0	0	0	0.74904	1	1266	1266		63.306	5.495	1	5966800	+		47148	36690	32724	32776	52504	52504					0.1531773856770542
LRLTLWPPR	9	Unmodified	_LRLTLWPPR_					0	0	0		ENST00000538682.5_1_11:62649445-62650469:+|nuORF	ENST00000538682.5_1_11:62649445-62650469:+|nuORF	ENST00000538682.5_1_11:62649445-62650469:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.3533325195312	2	576.356025	1150.6975	-1.0769	-0.00062066	-3.2597	-0.0018788	-4.3366	-0.0024994	576.3541284170691	44.824	0.99071	44.675	44.355	45.346	-0.1488					97	28	6	0	0	0	0.2508	1	4283	4283		82.241	22.31	1	5740900			47149	16392	32725	32777	52505	52505					0.1281769663050909
LRLVDQAI	8	Unmodified	_LRLVDQAI_					0	0	0			REV__ENSG00000145358|ENST00000273990|DDIT4L	REV__ENSG00000145358|ENST00000273990|DDIT4L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2722473144531	2	464.284734	926.554916	0.60954	0.000283	2.3306	0.0010821	2.9402	0.0013651	464.2857755200157	19.438	0.29277	19.438	19.218	19.511	0					8	5	3	0	0	0	0.027866	1	395	395		53.351	0	1	40436	+		47150	24403	32726	32778	52506	52506					0.08870064168456793
LRLVRSQP	8	Unmodified	_LRLVRSQP_					0	0	0		ENST00000475982.5_1_3:58223629-58242304:+|nuORF	ENST00000475982.5_1_3:58223629-58242304:+|nuORF	ENST00000475982.5_1_3:58223629-58242304:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7690734863281	2	484.803626	967.592698	-0.97163	-0.00047105	3.8055	0.0018449	2.8339	0.0013739	484.80363370376887	37.702	1.5676	37.62	36.847	38.414	-0.082512					108	43	4	0	0	0	0.027866	1	3053	3053		49.442	12.282	1	585720			47151	15077	32727	32779	52507	52507					0.10760575153949503
LRLVRSQP	8	Unmodified	_LRLVRSQP_					0	0	0		ENST00000475982.5_1_3:58223629-58242304:+|nuORF	ENST00000475982.5_1_3:58223629-58242304:+|nuORF	ENST00000475982.5_1_3:58223629-58242304:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.803626	967.592698	-1.1474	-0.00055627	3.524	0.0017085	2.3766	0.0011522	484.80373999396295	37.795	1.3071	37.795	37.414	38.721	0	0.064753	0.00082961	NaN	49.442	84	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864140			47152	15077	32727	32779							0.10760575153949503
LRLVRSQP	8	Unmodified	_LRLVRSQP_					0	0	0		ENST00000475982.5_1_3:58223629-58242304:+|nuORF	ENST00000475982.5_1_3:58223629-58242304:+|nuORF	ENST00000475982.5_1_3:58223629-58242304:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.803626	967.592698	-1.2511	-0.00060655	1.5527	0.00075276	0.30159	0.00014621	484.8036483241832	37.744	0.91486	37.776	37.487	38.402	0.032269	0.045647	-0.0010818	NaN	49.442	49	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	619720			47153	15077	32727	32779							0.10760575153949503
LRLWALSL	8	Unmodified	_LRLWALSL_					0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000530449.1_1_11:67817618-67817726:+|nuORF;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENSG00000185344|ENST00000330342|ATP6V0A2;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF;ENSG00000185344|ENST00000330342|ATP6V0A2;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.7718505859375	2	486.30547	970.596387	0.05339	2.5964E-05	1.656	0.0008053	1.7093	0.00083127	486.3053346776125	76.796	2.1514	76.528	75.704	77.855	-0.26806					84	52	3	0	0	0	0.027866	1	9047	9047		38.806	0	1	418980			47154	3058;2736;1024;9429	32728	32780	52508	52508					0.10991244927799926
LRLWALSL	8	Unmodified	_LRLWALSL_					0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000530449.1_1_11:67817618-67817726:+|nuORF;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENSG00000185344|ENST00000330342|ATP6V0A2;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF;ENSG00000185344|ENST00000330342|ATP6V0A2;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.30547	970.596387	-0.096358	-4.6859E-05	-0.34292	-0.00016676	-0.43928	-0.00021362	486.30520691338984	76.537	0.49101	76.537	76.268	76.759	0	0.099448	6.035E-05	NaN	38.806	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464010			47155	3058;2736;1024;9429	32728	32780							0.10991244927799926
LRLWALSL	8	Unmodified	_LRLWALSL_					0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000530449.1_1_11:67817618-67817726:+|nuORF;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENSG00000185344|ENST00000330342|ATP6V0A2;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF;ENSG00000185344|ENST00000330342|ATP6V0A2;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.30547	970.596387	-0.49147	-0.000239	0.060876	2.9605E-05	-0.43059	-0.0002094	486.30535708725694	76.758	0.49268	76.53	76.279	76.772	-0.22843	0.092584	0.00045309	NaN	38.806	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352210			47156	3058;2736;1024;9429	32728	32780							0.10991244927799926
LRMEQELA	8	Oxidation (M)	_LRM(Oxidation (M))EQELA_		LRM(1)EQELA		LRM(56)EQELA	0	0	1		ENST00000554444.5_1_16:89988343-89988469:+|nuORF	ENST00000554444.5_1_16:89988343-89988469:+|nuORF	ENST00000554444.5_1_16:89988343-89988469:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.25372314453125	2	503.255317	1004.49608	-1.1078	-0.00055753	-2.5272	-0.0012718	-3.635	-0.0018293	503.2540882834702	44.752	1.5034	44.604	44.288	45.792	-0.1488					112	43	4	0	0	0	0.845	1	4269	4269		55.504	7.5886	1	4705700			47157	16655	32729	32781	52509	52509		539			-0.005987801881701671
LRMGATCLI	9	Unmodified	_LRMGATCLI_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.265625	2	489.267173	976.519793	-1.1551	-0.00056515	-3.3341	-0.0016312	-4.4891	-0.0021964	489.26576454810476	55.84	2.6815	55.684	54.975	57.657	-0.15655					201	71	5	0	0	0	0.33245	2	5992	5980;5992		71.296	0	1	79791000	+		47158	28374	32730	32782	52510;52511	52511					0.030593620446438763
LRMGATCLI	9	Unmodified	_LRMGATCLI_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.26580810546875	2	489.267173	976.519793	-0.89131	-0.00043609	-3.6967	-0.0018087	-4.588	-0.0022448	489.2655824203169	55.918	2.8631	55.703	54.857	57.72	-0.21551					203	76	5	0	0	0	0.33245	1	5979	5979		71.296	0	1	70664000	+		47159	28374	32730	32782	52512	52512					0.030593620446438763
LRMIVMGK	8	Unmodified	_LRMIVMGK_					0	0	0		ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	ENSG00000276747|ENST00000619609|PADI6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2707214355469	2	474.280083	946.545614	0.56062	0.00026589	-1.3369	-0.00063407	-0.77629	-0.00036818	474.279285240777	24.407	1.1806	24.485	23.868	25.049	0.078344					58	25	3	0	0	0	0.027866	1	958	958		79.939	3.1651	1	1637700			47160	11052	32731	32783	52513	52513					0.07020256286944004
LRMQKGDP	8	Unmodified	_LRMQKGDP_					0	0	0		ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	ENST00000457262.1_1_10:43062145-43062928:+|nuORF;nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7541809082031	2	472.752744	943.490935	-0.53815	-0.00025441	2.0839	0.00098515	1.5457	0.00073074	472.7538156002825	39.589	1.3408	39.49	39.091	40.431	-0.098755					113	36	6	0	0	0	0.88442	1	3427	3427		52.299	2.2746	1	12900000			47161	2139;14606	32732	32784	52514	52514					0.016929607398765256
LRMSILSDL	9	Unmodified	_LRMSILSDL_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2970581054688	2	524.296985	1046.57942	-0.48822	-0.00025597	1.028	0.00053896	0.53975	0.00028299	524.2974061099324	100.39	1.4136	100.39	99.871	101.28	0					101	34	5	0	0	0	0.26966	2	12841	12841;12890		79.713	11.228	1	3300600	+		47162	25181	32733	32785	52515;52516	52515					0.05798956259695842
LRMSILSDL	9	Unmodified	_LRMSILSDL_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.296142578125	2	524.296985	1046.57942	-1.0531	-0.00055216	2.0044	0.0010509	0.95122	0.00049872	524.297968411829	103.06	1.2007	103.06	102.65	103.85	0					86	29	4	0	0	0	0.11092	1	13270	13270		108.09	28.375	1	4462700	+		47163	25181	32733	32785	52517	52517					0.05798956259695842
LRMSILSDL	9	Unmodified	_LRMSILSDL_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2962646484375	2	524.296985	1046.57942	-0.31499	-0.00016515	0.92053	0.00048263	0.60554	0.00031748	524.2973676751948	100.38	1.3018	100.39	99.91	101.21	0.010117					96	32	5	0	0	0	0.31037	2	12841	12841;12855		74.255	8.3436	1	2834100	+		47164	25181	32733	32785	52518;52519	52518					0.05798956259695842
LRMSILSDL	9	Unmodified	_LRMSILSDL_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.297607421875	2	524.296985	1046.57942	-0.2623	-0.00013752	1.3023	0.00068278	1.04	0.00054526	524.2975724524634	103.03	1.0612	103.03	102.67	103.73	0.0054169					80	26	4	0	0	0	0.2508	1	13179	13179		82.241	2.7895	1	4374000	+		47165	25181	32733	32785	52520	52520					0.05798956259695842
LRMSILSDL	9	Unmodified	_LRMSILSDL_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2969970703125	2	524.296985	1046.57942	0.31866	0.00016707	0.32581	0.00017082	0.64447	0.0003379	524.2970509151143	100.44	1.3456	100.44	100.01	101.36	-0.0050812					96	34	5	0	0	0	0.26966	3	12759	12759;12771;12799		79.713	7.8258	1	3281700	+		47166	25181	32733	32785	52521;52522;52523	52521					0.05798956259695842
LRMTKAEV	8	Unmodified	_LRMTKAEV_					0	0	0			REV__nc|ENSG00000079337|O95398-3|RAPGEF3	REV__nc|ENSG00000079337|O95398-3|RAPGEF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.2707214355469	2	474.27077	946.526987	0.33933	0.00016094	-0.1286	-6.0993E-05	0.21073	9.9942E-05	474.27076014061646	24.034	0.62833	24.112	23.736	24.364	0.078196					39	13	4	0	0	0	0.46709	1	958	958		88.643	3.2834	1	2335100	+		47167	20635	32734	32786	52524	52524					0.05158417916720737
LRMTKAEV	8	Unmodified	_LRMTKAEV_					0	0	0			REV__nc|ENSG00000079337|O95398-3|RAPGEF3	REV__nc|ENSG00000079337|O95398-3|RAPGEF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.2698059082031	2	474.27077	946.526987	0.54541	0.00025867	-0.27308	-0.00012951	0.27233	0.00012916	474.2705481960665	25.142	1.7224	25.223	24.733	26.455	0.08009					93	40	3	0	0	0	0.53523	1	1153	1153		82.305	8.3303	1	1733700	+		47168	20635	32734	32786	52525	52525					0.05158417916720737
LRMTKAEV	8	Unmodified	_LRMTKAEV_					0	0	0			REV__nc|ENSG00000079337|O95398-3|RAPGEF3	REV__nc|ENSG00000079337|O95398-3|RAPGEF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.27077	946.526987	0.1962	9.3051E-05	1.6729	0.00079339	1.8691	0.00088644	474.2707251695391	24.345	0.46707	24.13	23.909	24.377	-0.2151	0.01751	0.0015287	NaN	88.643	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45960	+		47169	20635	32734	32786							0.05158417916720737
LRMVAPHDEGR	11	Unmodified	_LRMVAPHDEGR_					0	0	0			REV__ENSG00000149929|ENST00000279392|HIRIP3	REV__ENSG00000149929|ENST00000279392|HIRIP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2559509277344	3	427.555789	1279.64554	-0.87849	-0.0003756	-1.4618	-0.000625	-2.3403	-0.0010006	427.5551009868148	44.767	0.86428	44.767	44.382	45.246	0					38	24	2	0	0	0	0.024727	1	4255	4255		4.8861	0	1	166900	+		47170	24706	32735	32787	52526	52526					0.01690165154400347
LRNASGSVI	9	Unmodified	_LRNASGSVI_					0	0	0		nc|ENSG00000108852|Q14168|MPP2;nc|ENSG00000108852|Q14168-5|MPP2;nc|ENSG00000108852|Q14168-6|MPP2;nc|ENSG00000108852|Q14168-2|MPP2;ENSG00000108852|ENST00000269095|MPP2;nc|ENSG00000108852|Q14168-3|MPP2;nc|ENSG00000108852|Q14168-4|MPP2	nc|ENSG00000108852|Q14168|MPP2	nc|ENSG00000108852|Q14168|MPP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.7638244628906	2	458.764166	915.513779	0.28955	0.00013283	-0.89355	-0.00040993	-0.604	-0.00027709	458.7638082986722	23.619	1.4149	23.417	23.061	24.476	-0.20193					93	32	5	0	0	0	0.17822	1	964	964		93.195	10.955	1	8728400			47171	18165	32736	32788	52527	52527					0.05264303129013115
LRNASGSVI	9	Unmodified	_LRNASGSVI_					0	0	0		nc|ENSG00000108852|Q14168|MPP2;nc|ENSG00000108852|Q14168-5|MPP2;nc|ENSG00000108852|Q14168-6|MPP2;nc|ENSG00000108852|Q14168-2|MPP2;ENSG00000108852|ENST00000269095|MPP2;nc|ENSG00000108852|Q14168-3|MPP2;nc|ENSG00000108852|Q14168-4|MPP2	nc|ENSG00000108852|Q14168|MPP2	nc|ENSG00000108852|Q14168|MPP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.763916015625	2	458.764166	915.513779	1.8701	0.00085795	-2.474	-0.001135	-0.60383	-0.00027702	458.7630833065857	23.532	1.4686	23.341	22.851	24.319	-0.19117					81	33	4	0	0	0	0.20967	2	921	921;941		87.754	7.8151	1	8963600			47172	18165	32736	32788	52528;52529	52528					0.05264303129013115
LRNDVAPTII	10	Unmodified	_LRNDVAPTII_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3;ENST00000567674.1_1_16:68721613-68732300:+|nuORF	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.3262939453125	2	556.327131	1110.63971	0.74413	0.00041398	-1.3377	-0.00074423	-0.59361	-0.00033024	556.3263061443001	60.063	0.6184	60.063	59.675	60.294	0					40	16	3	0	0	0	0.74632	1	6887	6887		64.207	2.0999	1	1475700			47173	351	32737	32789	52530	52530					0.08881389914427018
LRNDVAPTII	10	Unmodified	_LRNDVAPTII_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3;ENST00000567674.1_1_16:68721613-68732300:+|nuORF	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	556.327131	1110.63971	-0.62395	-0.00034712	0.036444	2.0275E-05	-0.58751	-0.00032685	556.3270126457063	60.24	0.59676	60.04	59.727	60.323	-0.20016	0.007225	0.0006734	NaN	64.207	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1256300			47174	351	32737	32789							0.08881389914427018
LRNEALNL	8	Unmodified	_LRNEALNL_					0	0	0			REV__ENSG00000137507|ENST00000260061|LRRC32	REV__ENSG00000137507|ENST00000260061|LRRC32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.3106689453125	2	471.771991	941.529429	0.18823	8.8799E-05	2.2738	0.0010727	2.462	0.0011615	471.76978998693085	48.425	0.64542	48.492	48.154	48.8	0.066795					34	17	3	0	0	0	0.027866	1	4841	4841		53.351	33.355	1	263590	+		47175	23764	32738	32790	52531	52531					0.056325896460293734
LRNEDGSL	8	Unmodified	_LRNEDGSL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.23004150390625	2	452.230156	902.445759	0.14346	6.4879E-05	-0.56213	-0.00025421	-0.41866	-0.00018933	452.2299426936562	26.846	1.153	26.846	26.573	27.726	0					47	29	2	0	0	0	0.46709	1	1403	1403		88.643	0	1	6191600			47176	7771	32739	32791	52532	52532					-0.009365665216591879
LRNEDGSL	8	Unmodified	_LRNEDGSL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2301940917969	2	452.230156	902.445759	-0.23433	-0.00010597	-0.24529	-0.00011093	-0.47962	-0.0002169	452.23007874856705	26.82	1.3423	26.807	26.537	27.88	-0.012983					52	34	2	0	0	0	0.46709	1	1399	1399		88.643	0	1	6805100			47177	7771	32739	32791	52533	52533					-0.009365665216591879
LRNETGNSS	9	Unmodified	_LRNETGNSS_					0	0	0		ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	ENST00000568973.5_1_16:30435747-30440477:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.26531982421875	2	489.23597	976.457387	-0.91403	-0.00044718	1.9809	0.00096914	1.0669	0.00052196	489.23709747394787	56.011	0.17931	55.796	55.745	55.924	-0.21551					9	4	3	0	0	0	0.024477	1	6052	6052		44.117	24.757	1	205130			47178	16997	32740	32792	52534	52534					-0.031783694983232635
LRNGIALR	8	Unmodified	_LRNGIALR_					0	0	0		ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	ENSG00000123219|ENST00000396679|CENPK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.77197265625	2	456.790518	911.566484	0.40319	0.00018418	-0.44843	-0.00020484	-0.045239	-2.0665E-05	456.7901650957065	18.226	0.44318	18.095	17.908	18.352	-0.13148					13	8	2	0	0	0	0.027866	1	257	257		26.796	0	1	75553			47179	3964	32741	32793	52535	52535					0.10716305982441554
LRNGQVVDI	9	Unmodified	_LRNGQVVDI_					0	0	0		XIAP|p.T143N|1|0.31|ENSG00000101966|chrX:123886090-123886090|C/A|missense_variant	XIAP|p.T143N|1|0.31|ENSG00000101966|chrX:123886090-123886090|C/A|missense_variant	XIAP|p.T143N|1|0.31|ENSG00000101966|chrX:123886090-123886090|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2896728515625	2	507.290548	1012.56654	-0.0051443	-2.6097E-06	0.94669	0.00048025	0.94155	0.00047764	507.29003077260427	43.631	0.64995	43.661	43.267	43.917	0.030827					50	17	4	0	0	0	0.53979	1	4064	4064		56.721	3.7844	1	3699100			47180	38160	32742	32794	52536	52536					0.060762611917994036
LRNITLAP	8	Unmodified	_LRNITLAP_					0	0	0			REV__ENST00000419045.1_1_X:48635274-48635379:-|nuORF	REV__ENST00000419045.1_1_X:48635274-48635379:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.2782287597656	2	449.279452	896.544351	0.14861	6.6767E-05	-0.47566	-0.0002137	-0.32705	-0.00014694	449.27904975027144	57.586	0.99926	57.586	57.266	58.266	0					45	26	3	0	0	0	0.6248	1	6479	6479		73.975	4.3471	1	4179000	+		47181	26130	32743	32795	52537	52537					0.09194081514033314
LRNKIIQA	8	Unmodified	_LRNKIIQA_					0	0	0		ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.305419921875	2	478.306001	954.597449	-0.16623	-7.9508E-05	-1.0636	-0.00050873	-1.2298	-0.00058824	478.30570445946177	32.267	1.4498	32.279	31.943	33.393	0.011795					104	38	5	0	0	0	0.88442	1	2221	2221		52.299	0.96372	1	21017000			47182	6956	32744	32796	52538	52538					0.11833459296690307
LRNKLAELH	9	Unmodified	_LRNKLAELH_					0	0	0			REV__ENSG00000168434|ENST00000307149|COG7	REV__ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3272705078125	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.15029	2	3794	3794;3932		99.375	3.1845	1	32648000	+		47183	26258	32745	32797	52539;52540	52539					0.0977622935411091
LRNKLAELH	9	Unmodified	_LRNKLAELH_					0	0	0			REV__ENSG00000168434|ENST00000307149|COG7	REV__ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3270874023438	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.16468	2	3860	3860;3902		96.19	5.8611	1	35496000	+		47184	26258	32745	32797	52541;52542	52541					0.0977622935411091
LRNNKTII	8	Unmodified	_LRNNKTII_					0	0	0		ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3041687011719	2	486.303458	970.592364	-0.11046	-5.3718E-05	-0.62688	-0.00030485	-0.73734	-0.00035857	486.30316316197457	47.719	1.2822	47.443	47.044	48.326	-0.27598					88	34	4	0	0	0	0.96769	1	4650	4650		42.396	1.618	1	15986000			47185	10699	32746	32798	52543	52543					0.10589155434104214
LRNNKTII	8	Unmodified	_LRNNKTII_					0	0	0		ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	ENSG00000231738|ENST00000532498|TSPAN19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3036193847656	2	486.303458	970.592364	0.29385	0.0001429	-0.99079	-0.00048183	-0.69695	-0.00033893	486.3029765935442	47.556	1.5497	47.369	46.966	48.516	-0.18684					93	41	5	0	0	0	0.96769	1	4653	4653		42.396	1.618	1	15120000			47186	10699	32746	32798	52544	52544					0.10589155434104214
LRNPKPGN	8	Unmodified	_LRNPKPGN_					0	0	0		ENST00000368874.8_2_1:151264931-151265267:-|nuORF	ENST00000368874.8_2_1:151264931-151265267:-|nuORF	ENST00000368874.8_2_1:151264931-151265267:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2586364746094	2	448.259051	894.503549	0.35148	0.00015756	-0.50826	-0.00022783	-0.15678	-7.0278E-05	448.2586890631354	89.096	1.4611	89.112	88.623	90.084	0.015907					87	34	4	0	0	0	0.97924	1	11198	11198		40.573	11.423	1	7395300			47187	12908	32747	32799	52545	52545					0.05207740194418875
LRNPKPGN	8	Unmodified	_LRNPKPGN_					0	0	0		ENST00000368874.8_2_1:151264931-151265267:-|nuORF	ENST00000368874.8_2_1:151264931-151265267:-|nuORF	ENST00000368874.8_2_1:151264931-151265267:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2587890625	2	448.259051	894.503549	0.20031	8.9789E-05	-0.47015	-0.00021075	-0.26985	-0.00012096	448.25872211244354	89.189	1.6752	89.051	88.482	90.157	-0.13761					97	39	4	0	0	0	1.0338	1	10915	10915		31.955	0	1	8594700			47188	12908	32747	32799	52546	52546					0.05207740194418875
LRNPLSRVS	9	Unmodified	_LRNPLSRVS_					0	0	0		ENST00000393800.6_2_11:68382148-68382592:+|nuORF	ENST00000393800.6_2_11:68382148-68382592:+|nuORF	ENST00000393800.6_2_11:68382148-68382592:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7748413085938	2	521.311815	1040.60908	-0.87998	-0.00045874	3.5907	0.0018718	2.7107	0.0014131	521.313445606888	52.256	0.68231	52.137	51.758	52.44	-0.11875					35	17	3	0	0	0	0.024374	1	5426	5426		40.778	0	1	258680			47189	13469	32748	32800	52547	52547					0.09039656320032918
LRNPRAAPG	9	Unmodified	_LRNPRAAPG_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2608642578125	2	476.277775	950.540997	-0.33096	-0.00015763	-3.3719	-0.001606	-3.7028	-0.0017636	476.2764845144148	28.017	0.51369	27.865	27.689	28.203	-0.15195					24	12	3	0	0	0	0.024386	1	1558	1558		33.516	8.0654	1	1230500			47190	1777	32749	32801	52548	52548					0.06374831460027508
LRNRQAVR	8	Unmodified	_LRNRQAVR_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7561340332031	2	506.809774	1011.60499	-0.76574	-0.00038808	-0.72754	-0.00036873	-1.4933	-0.00075681	506.80926829883055	34.906	0.3922	34.884	34.513	34.905	-0.021763					14	9	2	0	0	0	0.027866	1	2588	2588		35.201	10.998	1	127560			47191	10639	32750	32802	52549	52549					0.09965611616974002
LRNRQAVR	8	Unmodified	_LRNRQAVR_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.809774	1011.60499	-0.63346	-0.00032105	-6.4456	-0.0032667	-7.0791	-0.0035877	506.8054886469044	34.82	0.51257	34.634	34.323	34.835	-0.18675	-0.10248	-0.00043353	NaN	35.201	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190720			47192	10639	32750	32802							0.09965611616974002
LRNTLDGYGI	10	Unmodified	_LRNTLDGYGI_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.2549438476562	2	561.301113	1120.58767	-0.32604	-0.000183	-2.1564	-0.0012104	-2.4824	-0.0013934	561.2999730286012	64.149	0.54531	63.898	63.659	64.204	-0.25141					25	14	2	0	0	0	0.03519	1	7524	7524		76.774	30.822	1	194580			47193	1738	32751	32803	52550	52550					0.03220226500661738
LRPAGPVAV	9	Unmodified	_LRPAGPVAV_					0	0	0		ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	440.2742919921875	2	440.27417	878.533787	0.032739	1.4414E-05	-0.17859	-7.8628E-05	-0.14585	-6.4213E-05	440.274075435859	42.842	0.79799	42.842	42.534	43.332	0					54	21	3	0	0	0	0.43973	1	3974	3974		63.306	0.32785	1	12206000			47194	4004	32752	32804	52551	52551					0.08966098859616523
LRPALLWALL	10	Unmodified	_LRPALLWALL_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2;NOTCH2|p.R1111Gfs*96|1|0.26|ENSG00000134250|chr1:119937864-119937864|G/-|frameshift_variant;NOTCH2|p.Q1584Rfs*17|1|0.32|ENSG00000134250|chr1:119923745-119923745|T/-|frameshift_variant;NOTCH2|p.V1697*|1|0.29|ENSG00000134250|chr1:119922360-119922360|C/-|frameshift_variant;NOTCH2|p.T160Cfs*19|1|0.17|ENSG00000134250|chr1:119997266-119997270|GTGGT/-|frameshift_variant;NOTCH2-SPAG17|2|fusion;nc|ENSG00000286106|A0A096LNW5|NOTCH2NLR;nc|ENSG00000286019|P0DPK3|NOTCH2NLB;NOTCH2-SPAG17|1|fusion;NOTCH2|p.H656Lfs*46|1|0.18|ENSG00000134250|chr1:119959451-119959451|T/-|frameshift_variant;ENST00000479412.2_1_1:120548017-120612131:-|nuORF	ENSG00000134250|ENST00000256646|NOTCH2;ENST00000479412.2_1_1:120548017-120612131:-|nuORF	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.3758544921875	2	583.376426	1164.7383	-0.13284	-7.7494E-05	1.0801	0.0006301	0.94726	0.00055261	583.3768732961844	46.356	0.90649	46.259	45.632	46.539	-0.096653					61	24	4	0	0	0	1.1237	1	4454	4454		23.042	5.6775	1	5826800			47195	4770;15169	32753	32805	52552	52552					0.16252037950107479
LRPALVGVVK	10	Unmodified	_LRPALVGVVK_					0	0	0		ENSG00000109519|ENST00000264954|GRPEL1;ENST00000509696.5_1_4:7062591-7066009:-|nuORF	ENSG00000109519|ENST00000264954|GRPEL1	ENSG00000109519|ENST00000264954|GRPEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2981567382812	2	526.352951	1050.69135	-0.86102	-0.0004532	0.82093	0.0004321	-0.040092	-2.1103E-05	526.3532318380668	54.839	0.39331	54.839	54.723	55.116	0					15	10	2	0	0	0	0.03519	1	6051	6051		34.173	5.023	1	142640			47196	2981	32754	32806	52553	52553					0.168031783989818
LRPALVGVVK	10	Unmodified	_LRPALVGVVK_					0	0	0		ENSG00000109519|ENST00000264954|GRPEL1;ENST00000509696.5_1_4:7062591-7066009:-|nuORF	ENSG00000109519|ENST00000264954|GRPEL1	ENSG00000109519|ENST00000264954|GRPEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2977294921875	2	526.352951	1050.69135	-0.41784	-0.00021993	0.043303	2.2793E-05	-0.37453	-0.00019714	526.3527871703669	54.993	0.35661	54.843	54.676	55.033	-0.15036					15	9	2	0	0	0	0.03519	1	6050	6050		34.173	6.2903	1	93500			47197	2981	32754	32806	52554	52554					0.168031783989818
LRPELDAPLG	10	Unmodified	_LRPELDAPLG_					0	0	0		ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	ENSG00000127528|ENST00000248071|KLF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8056030273438	2	540.806031	1079.59751	-0.53984	-0.00029195	0.35663	0.00019287	-0.18321	-9.9078E-05	540.8058641429475	52.599	0.99752	52.691	52.16	53.157	0.091938					73	25	4	0	0	0	0.50517	1	5568	5568		87.696	15.819	1	8001900			47198	4252	32755	32807	52555	52555					0.06089414506027424
LRPEPDGRPG	10	Unmodified	_LRPEPDGRPG_					0	0	0			REV__ENST00000393966.1_1_16:67316204-67316426:+|nuORF	REV__ENST00000393966.1_1_16:67316204-67316426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3273315429688	2	547.291079	1092.56761	-0.72702	-0.00039789	-0.064398	-3.5245E-05	-0.79142	-0.00043314	547.2916461947956	41.665	0.45753	41.688	41.564	42.021	0.023006					14	12	2	0	0	0	0.03519	1	3743	3743		104.06	21.816	1	105940	+		47199	31660	32756	32808	52556	52556					0.025024755606864346
LRPEPPKTR	9	Unmodified	_LRPEPPKTR_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B;ENSG00000198173|ENST00000358047|FAM47C	ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3275146484375	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.2101	1	3655	3655		87.696	0	1	33183000			47200	9793	32757	32809	52557	52557					0.0977622935411091
LRPGHPRK	8	Unmodified	_LRPGHPRK_					0	0	0		ENST00000453922.1_3_10:6008176-6019154:-|nuORF	ENST00000453922.1_3_10:6008176-6019154:-|nuORF	ENST00000453922.1_3_10:6008176-6019154:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.7616882324219	2	480.796135	959.577717	0.39714	0.00019095	-2.3906	-0.0011494	-1.9934	-0.00095842	480.7947714196835	19.032	0.3452	18.829	18.559	18.904	-0.20371					11	6	3	0	0	0	0.027866	1	373	373		26.796	6.3143	1	54936			47201	14558	32758	32810	52558	52558					0.0963112807660309
LRPGPPVWPG	10	Unmodified	_LRPGPPVWPG_					0	0	0			REV__ENSG00000166454|ENST00000299575|ATMIN	REV__ENSG00000166454|ENST00000299575|ATMIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8185424804688	2	538.306001	1074.59745	-0.7512	-0.00040438	1.8363	0.00098851	1.0851	0.00058414	538.3068620425083	67.162	0.61201	67.162	66.714	67.326	0					29	14	3	0	0	0	0.03519	1	7988	7988		38.806	19.446	1	519800	+		47202	26019	32759	32811	52559	52559					0.06313459296711699
LRPGPRKT	8	Unmodified	_LRPGPRKT_					0	0	0		nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-4|CCDC88A	nc|ENSG00000115355|Q3V6T2-4|CCDC88A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2322082519531	2	462.790518	923.566484	-1.0888	-0.00050387	-0.08972	-4.1522E-05	-1.1785	-0.00054539	462.7907217779093	28.814	0.37735	28.814	28.696	29.073	0					15	8	3	0	0	0	0.027866	1	1709	1709		12.207	0	1	69329			47203	3437	32760	32812	52560	52560					0.1016430598245961
LRPGPRKT	8	Unmodified	_LRPGPRKT_					0	0	0		nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-4|CCDC88A	nc|ENSG00000115355|Q3V6T2-4|CCDC88A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.790518	923.566484	0.61389	0.0002841	0.012615	5.838E-06	0.6265	0.00028994	462.790495096902	28.699	0.37043	28.78	28.574	28.945	0.080812	-0.016939	3.9541E-05	NaN	12.207	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51632			47204	3437	32760	32812							0.1016430598245961
LRPGRGAR	8	Unmodified	_LRPGRGAR_					0	0	0			REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7879638671875	2	441.77266	881.530767	-0.76518	-0.00033804	1.0523	0.00046487	0.2871	0.00012683	441.7725193591939	40.715	0.6748	40.579	40.272	40.947	-0.13553					24	17	2	0	0	0	0.027866	1	3593	3593		23.042	5.6775	1	192450	+		47205	29955	32761	32813	52561	52561					0.08526268525463365
LRPGSLTLGTP	11	Unmodified	_LRPGSLTLGTP_					0	0	0		ENST00000404338.7_1_19:47505195-47505501:+|nuORF	ENST00000404338.7_1_19:47505195-47505501:+|nuORF	ENST00000404338.7_1_19:47505195-47505501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.3269653320312	2	556.327131	1110.63971	-0.70612	-0.00039283	0.19417	0.00010802	-0.51195	-0.00028481	556.3271575000944	59.917	1.0459	59.995	59.234	60.28	0.078884					55	27	4	0	0	0	0.84811	1	6792	6792		54.776	1.4249	1	1199900			47206	13703	32762	32814	52562	52562					0.08881389914427018
LRPHSSLSP	9	Unmodified	_LRPHSSLSP_					0	0	0		nc|ENSG00000069188|Q58EX2-2|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF	nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2980041503906	2	497.277441	992.540328	0.94381	0.00046933	2.4027	0.0011948	3.3465	0.0016641	497.27848651834233	71.095	0.41431	70.802	70.542	70.956	-0.29291					16	9	3	0	0	0	0.024405	1	8535	8535		35.618	0	1	98678			47207	18071	32763	32815	52563	52563					0.043759920203456204
LRPHSYVKTI	10	Unmodified	_LRPHSYVKTI_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.2388916015625	3	405.239907	1212.69789	0.13612	5.516E-05	-3.3125	-0.0013424	-3.1764	-0.0012872	405.23864125404083	27.134	1.1706	27.121	26.786	27.957	-0.012983					102	30	5	0	0	0	0.86389	1	1459	1459		56.434	8.4743	1	15084000			47208	888	32764	32816	52564	52564					0.10005071559726275
LRPLGPIL	8	Unmodified	_LRPLGPIL_					0	0	0		ENST00000415494.1_1_X:79965525-79965963:+|nuORF	ENST00000415494.1_1_X:79965525-79965963:+|nuORF	ENST00000415494.1_1_X:79965525-79965963:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.7950134277344	2	439.794738	877.574923	-0.21575	-9.4885E-05	0.53633	0.00023587	0.32058	0.00014099	439.7948101661232	67.021	0.89538	66.74	66.499	67.395	-0.28149					45	22	3	0	0	0	0.61897	1	7947	7947		74.517	0	1	1670400			47209	13876	32765	32817	52565	52565					0.13123859899098989
LRPLKLSLM	9	Oxidation (M)	_LRPLKLSLM(Oxidation (M))_		LRPLKLSLM(1)		LRPLKLSLM(96)	0	0	1			REV__ENSG00000137819|ENST00000395407|PAQR5	REV__ENSG00000137819|ENST00000395407|PAQR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.302978515625	2	543.83882	1085.66309	1.3556	0.00073723	-4.183	-0.0022749	-2.8274	-0.0015377	543.8363854474459	74.353	0.87599	74.353	73.999	74.875	0					37	20	4	0	0	0	0.022587	1	9106	9106		96.19	11.275	1	377750	+		47210	23788	32766	32818	52566	52566		703			0.12368112427384403
LRPLLECLH	9	Unmodified	_LRPLLECLH_					0	0	0			REV__ENSG00000127948|ENST00000461988|POR	REV__ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3271484375	2	547.312969	1092.61138	-0.13948	-7.6338E-05	-3.492	-0.0019112	-3.6315	-0.0019876	547.8125602365209	41.251	0.63645	41.128	40.725	41.361	-0.12317					19	17	2	0	0	0	0.018983	1	3673	3673		104.75	0	1	206070	+		47211	22954	32767	32819	52567	52567					0.0687836873348715
LRPLLLAEV	9	Unmodified	_LRPLLLAEV_					0	0	0			REV__ENST00000465878.6_2_16:57792547-57792799:-|nuORF	REV__ENST00000465878.6_2_16:57792547-57792799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7743530273438	2	512.331685	1022.64882	-0.10875	-5.5718E-05	0.14138	7.2435E-05	0.03263	1.6718E-05	512.8338799702769	24.387	0.17347	24.172	24.044	24.217	-0.21511					5	3	2	0	0	0	0.024541	1	1060	1060		23.042	11.531	1	46018	+		47212	33017	32768	32820	52568	52568					0.13839783270748285
LRPLVVSLF	9	Unmodified	_LRPLVVSLF_					0	0	0			REV__ENSG00000100425|ENST00000404760|BRD1	REV__ENSG00000100425|ENST00000404760|BRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.789794921875	2	522.334227	1042.6539	-0.42547	-0.00022224	0.36565	0.00019099	-0.059821	-3.1247E-05	522.3342214615889	84.307	1.5044	84.307	83.91	85.414	0					89	35	3	0	0	0	0.024405	1	10529	10529		44.117	0	1	486080	+		47213	21115	32769	32821	52569	52569					0.13428087133365807
LRPNLQPLS	9	Unmodified	_LRPNLQPLS_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;DPY19L3|p.G455Afs*5|1|0.45|ENSG00000178904|chr19:32463401-32463401|A/-|frameshift_variant	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.3081665039062	2	519.308741	1036.60293	-1.4697	-0.00076322	0.62143	0.00032271	-0.84826	-0.00044051	519.3089843045811	49.014	1.1054	49.088	48.772	49.877	0.074192					71	29	4	0	0	0	0.31247	1	4999	4999		73.975	10.668	1	6039000			47214	8842	32770	32822	52570	52570					0.08609138088513646
LRPPAPTSV	9	Unmodified	_LRPPAPTSV_					0	0	0		ENST00000322764.9_1_7:143087806-143088163:+|nuORF	ENST00000322764.9_1_7:143087806-143088163:+|nuORF	ENST00000322764.9_1_7:143087806-143088163:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7246398925781	2	469.276909	936.539266	-0.212	-9.9488E-05	-0.28486	-0.00013368	-0.49686	-0.00023316	469.2768505209648	47.352	1.0429	47.411	46.957	47.999	0.059097					75	30	3	0	0	0	0.024405	1	4609	4609		27.882	0	1	1954400			47215	12229	32771	32823	52571	52571					0.06845777651426488
LRPPPRPN	8	Unmodified	_LRPPPRPN_					0	0	0			REV__ENST00000478241.6_2_12:56223797-56224400:+|nuORF	REV__ENST00000478241.6_2_12:56223797-56224400:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7822570800781	2	473.782693	945.550834	0.46405	0.00021986	-0.78014	-0.00036962	-0.3161	-0.00014976	473.7821932567515	23.747	0.59815	23.545	23.237	23.835	-0.20193					39	13	4	0	0	0	0.99042	1	984	984		38.806	3.1879	1	1591300	+		47216	33356	32772	32824	52572	52572					0.07588019465413254
LRPPSRVD	8	Unmodified	_LRPPSRVD_					0	0	0		ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.76922607421875	2	470.272158	938.529764	-0.23602	-0.00011099	-1.5389	-0.00072372	-1.775	-0.00083471	470.27145732232515	48.43	0.71364	48.277	47.827	48.54	-0.15301					42	20	3	0	0	0	0.027866	1	4918	4918		55.504	0	1	1877000			47217	3260	32773	32825	52573	52573					0.058040093658974
LRPQLLELV	9	Unmodified	_LRPQLLELV_					0	0	0			REV__ENST00000216442.11_1_14:67826392-67826491:-|nuORF	REV__ENST00000216442.11_1_14:67826392-67826491:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8410034179688	2	540.842416	1079.67028	-0.3908	-0.00021136	-2.1747	-0.0011762	-2.5655	-0.0013875	540.8411108916886	18.508	0.63838	18.376	18.056	18.694	-0.13147					30	12	3	0	0	0	1.0148	1	296	296		17.365	0.89182	1	237270	+		47218	29315	32774	32826	52574	52574					0.133631682994519
LRPRCQACDE	10	Unmodified	_LRPRCQACDE_					0	0	0		nc|ENSG00000012211|O43900-2|PRICKLE3;ENSG00000012211|ENST00000599218|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.801025390625	2	595.773882	1189.53321	-0.40401	-0.0002407	3.7809	0.0022525	3.3769	0.0020118	595.7761981972187	79.153	0.32715	78.934	78.791	79.118	-0.21923					11	7	2	0	0	0	0.03519	1	9465	9465		32.812	8.6097	1	107130			47219	907	32775	32827	52575	52575					-0.05397431914070694
LRPRDEAHLIM	11	Unmodified	_LRPRDEAHLIM_					0	0	0		chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|46	chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|46	chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2401123046875	3	450.915206	1349.72379	-0.19149	-8.6346E-05	2.7228	0.0012278	2.5313	0.0011414	450.91643640160004	24.325	1.006	24.325	23.78	24.786	0					57	22	4	0	0	0	0.024759	1	1014	1014		17.833	12.42	1	898830			47220	369	32776	32828	52576	52576					0.06291597739664212
LRPRDSFRGS	10	Unmodified	_LRPRDSFRGS_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.801025390625	2	595.823078	1189.6316	-0.40157	-0.00023926	3.8097	0.0022699	3.4081	0.0020306	595.8254493356495	79.147	0.28528	78.926	78.789	79.074	-0.2212					11	6	2	0	0	0	0.03519	1	9465	9465		34.173	9.9698	1	108550			47221	4163	32777	32829	52577	52577					0.04437255717652988
LRPRRLLRY	9	Unmodified	_LRPRRLLRY_					0	0	0			REV__DAB2IP|p.M327Ifs*63|1|0.56|ENSG00000136848|chr9:121760250-121760250|G/-|frameshift_variant	REV__DAB2IP|p.M327Ifs*63|1|0.56|ENSG00000136848|chr9:121760250-121760250|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.9024658203125	2	621.898923	1241.78329	0.31564	0.00019629	3.7128	0.002309	4.0284	0.0025053	621.900970136541	105.9	0.32963	105.9	105.79	106.12	0					29	14	3	0	0	0	1.0192	1	13602	13602		16.473	2.336	1	208300	+		47222	19648	32778	32830	52578	52578					0.1720728153602522
LRPSISLMF	9	Unmodified	_LRPSISLMF_					0	0	0			REV__nc|ENSG00000204267|Q03519-2|TAP2	REV__nc|ENSG00000204267|Q03519-2|TAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.78125	2	532.30207	1062.58959	-0.8433	-0.00044889	2.7172	0.0014464	1.874	0.00099751	532.3040530460106	57.468	0.6147	57.293	57.063	57.678	-0.17513					24	15	2	0	0	0	0.024405	1	6253	6253		35.618	0	1	672880	+		47223	28581	32779	32831	52579	52579					0.06079563984917513
LRPSTVNEL	9	Unmodified	_LRPSTVNEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7901000976562	2	514.790381	1027.56621	-0.26336	-0.00013557	-0.051073	-2.6292E-05	-0.31443	-0.00016187	514.7902556799066	43.298	1.1573	43.185	42.614	43.772	-0.11253					64	30	4	0	0	0	0.065	1	3956	3956		123.21	19.151	1	3683300			47224	2053	32780	32832	52580	52580					0.05352841471949432
LRPSTVNEL	9	Unmodified	_LRPSTVNEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.7899780273438	2	514.790381	1027.56621	-0.56385	-0.00029026	-0.26234	-0.00013505	-0.82619	-0.00042531	514.7901433468852	43.47	0.88336	43.232	42.953	43.836	-0.23736					54	23	3	0	0	0	0.18994	2	3984	3972;3984		90.601	3.1113	1	3764600			47225	2053	32780	32832	52581;52582	52582					0.05352841471949432
LRPSTVNEL	9	Unmodified	_LRPSTVNEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.7897338867188	2	514.790381	1027.56621	-0.83209	-0.00042835	-0.014595	-7.5133E-06	-0.84669	-0.00043587	514.7903115521545	43.485	0.71357	43.259	42.989	43.703	-0.22597					47	19	3	0	0	0	0.072913	1	3971	3971		120.31	19.053	1	4282600			47226	2053	32780	32832	52583	52583					0.05352841471949432
LRPTSPRNI	9	Unmodified	_LRPTSPRNI_					0	0	0		ENST00000591299.1_2_22:17082945-17094937:+|nuORF;HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|44|3|sense;nc|ENSG00000265992|Q1W209|ESRG	ENST00000591299.1_2_22:17082945-17094937:+|nuORF;nc|ENSG00000265992|Q1W209|ESRG	ENST00000591299.1_2_22:17082945-17094937:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3117065429688	2	527.311815	1052.60908	0.26285	0.0001386	-0.81339	-0.00042891	-0.55054	-0.00029031	527.3113494479176	36.895	0.83831	36.895	36.648	37.486	0					47	21	3	0	0	0	0.72875	1	2958	2958		44.117	1.7207	1	4058800			47227	17350;18786	32781	32833	52584	52584					0.08487656320039605
LRPTSRPLPG	10	Unmodified	_LRPTSRPLPG_					0	0	0		ENST00000438008.5_1_1:160313254-160313515:+|nuORF	ENST00000438008.5_1_1:160313254-160313515:+|nuORF	ENST00000438008.5_1_1:160313254-160313515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3270874023438	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.42812	3	3927	3911;3927;3965		95.815	8.1187	1	33183000			47228	14303	32782	32834	52585;52586;52587	52586					0.0977622935411091
LRPTSRPLPG	10	Unmodified	_LRPTSRPLPG_					0	0	0		ENST00000438008.5_1_1:160313254-160313515:+|nuORF	ENST00000438008.5_1_1:160313254-160313515:+|nuORF	ENST00000438008.5_1_1:160313254-160313515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3275756835938	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.26927	1	3622	3622		112.41	13.782	1	35496000			47229	14303	32782	32834	52588	52588					0.0977622935411091
LRPTVTSVI	9	Unmodified	_LRPTVTSVI_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	493.305667	984.596781	-0.29584	-0.00014594	-4.3192	-0.0021307	-4.615	-0.0022766	493.3001413972646	41.757	0.22457	41.625	41.491	41.716	-0.13219					10	5	3	0	0	0	0.023837	1	3772	3772		84.916	7.5979	1	52254			47230	2912	32783	32835	52589	52589					0.10386619857001733
LRPVAGLVIL	10	Unmodified	_LRPVAGLVIL_					0	0	0			REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	REV__nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.8555908203125	2	525.855327	1049.6961	0.34124	0.00017945	-0.40187	-0.00021133	-0.060626	-3.1881E-05	525.8549604776006	76.933	0.54391	76.681	76.399	76.943	-0.25162					29	12	3	0	0	0	0.91051	1	9170	9170		53.351	0	1	635830	+		47231	19170	32784	32836	52590	52590					0.17324062541752028
LRPWRPLR	8	Unmodified	_LRPWRPLR_					0	0	0		ENST00000460612.5_1_1:53372128-53387345:-|nuORF;nc|ENSG00000121310|Q86YB7-2|ECHDC2;ENSG00000121310|ENST00000371522|ECHDC2	ENST00000460612.5_1_1:53372128-53387345:-|nuORF	ENST00000460612.5_1_1:53372128-53387345:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3273315429688	2	547.34071	1092.66687	-0.75121	-0.00041117	2.9099	0.0015927	2.1587	0.0011816	547.3420990985319	41.85	0.38313	41.873	41.67	42.053	0.023006					12	10	2	0	0	0	0.027866	1	3743	3743		101.21	0	1	206660			47232	3862	32785	32837	52591	52591					0.1242396303609894
LRQAVPAL	8	Unmodified	_LRQAVPAL_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B;ENST00000546626.1_1_12:50035771-50036335:+|nuORF	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MSMS	OPSCC_40_ClassI_Rep-3	6	434.2734375	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.02	1	82.882	82.382	83.382	-0.1386								0	0	0	0.62214	1	10000	10000		46.766	0	1				47233	3067	32786	32838	52592	52592					0.09518098859598467
LRQCLLGLVT	10	Unmodified	_LRQCLLGLVT_					0	0	0			REV__ENSG00000018280|ENST00000233202|SLC11A1	REV__ENSG00000018280|ENST00000233202|SLC11A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3322143554688	2	558.333901	1114.65325	0.33786	0.00018864	-3.4236	-0.0019115	-3.0857	-0.0017229	558.3319252829885	59.395	0.98627	59.206	58.897	59.883	-0.18885					73	24	5	0	0	0	0.71272	1	6547	6547		66.429	5.4573	1	5632800	+		47234	19979	32787	32839	52593	52593					0.10050924422012031
LRQELAPVL	9	Unmodified	_LRQELAPVL_					0	0	0			REV__ENST00000489617.5_1_1:205496852-205498898:+|nuORF	REV__ENST00000489617.5_1_1:205496852-205498898:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.818359375	2	519.818941	1037.62333	0.39079	0.00020314	-0.95648	-0.0004972	-0.56569	-0.00029406	519.8185167136494	71.654	3.022	71.366	70.459	73.481	-0.28858					180	76	4	0	0	0	0.35646	1	8659	8659		68.787	4.5796	1	29892000	+		47235	33675	32788	32840	52594	52594					0.10602308748320866
LRQELAPVL	9	Unmodified	_LRQELAPVL_					0	0	0			REV__ENST00000489617.5_1_1:205496852-205498898:+|nuORF	REV__ENST00000489617.5_1_1:205496852-205498898:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8187255859375	2	519.818941	1037.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.336	1	71.347	70.847	71.847	0.010735								0	0	0	0.47068	1	8564	8564		56.721	1.9447	1		+		47236	33675	32788	32840	52595	52595					0.10602308748320866
LRQEPLLG	8	Unmodified	_LRQEPLLG_					0	0	0			REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.2768249511719	2	463.276909	924.539266	0.15038	6.9669E-05	-0.073317	-3.3966E-05	0.077066	3.5703E-05	463.2767385481598	56.431	1.1114	56.529	56.173	57.284	0.097893					73	30	4	0	0	0	0.71833	1	6210	6210		65.803	2.4969	1	4737600	+		47237	35303	32789	32841	52596	52596					0.0739777765143117
LRQEQIDN	8	Unmodified	_LRQEQIDN_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.31024169921875	2	508.261988	1014.50942	-0.27014	-0.0001373	-0.43882	-0.00022304	-0.70896	-0.00036034	508.261829485296	31.598	0.40964	31.413	31.283	31.693	-0.18503					16	9	3	0	0	0	0.027866	1	2146	2146		54.776	12.38	1	82387			47238	10033	32790	32842	52597	52597					0.0027479391542328813
LRQILEIVLAF	11	Unmodified	_LRQILEIVLAF_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.9451599121094	3	438.942979	1313.80711	3.8562	0.0016926	2.8872	0.0012673	6.7434	0.00296	438.9440915305843	18.235	0.54839	17.992	17.776	18.324	-0.24256					22	10	3	0	0	0	1.0878	1	259	259		14.694	2.487	1	43165			47239	9383	32791	32843	52598	52598					0.16275657459163995
LRQILEIVLAF	11	Unmodified	_LRQILEIVLAF_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	438.942979	1313.80711	0.75911	0.00033321	6.3574	0.0027905	7.1165	0.0031237	438.9456894831661	18.116	0.44207	17.96	17.755	18.197	-0.15637	0.005894	0.0010699	NaN	14.694	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55217			47240	9383	32791	32843							0.16275657459163995
LRQILEIVLAF	11	Unmodified	_LRQILEIVLAF_					0	0	0		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	438.942979	1313.80711	-0.035447	-1.5559E-05	6.8199	0.0029935	6.7844	0.002978	438.9458877033929	18.117	0.44576	17.91	17.764	18.21	-0.20669	-0.043781	0.0016789	NaN	14.694	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34594			47241	9383	32791	32843							0.16275657459163995
LRQKLTLP	8	Unmodified	_LRQKLTLP_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.P578Hfs*4|1|0.11|ENSG00000133858|chr12:71637052-71637053|-/GT|frameshift_variant;ZFC3H1|p.P578Kfs*5|1|0.1|ENSG00000133858|chr12:71637054-71637055|-/TCTTG|frameshift_variant;nc|ENSG00000133858|O60293-4|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.8174743652344	2	484.816202	967.617851	-0.24311	-0.00011786	0.45676	0.00022144	0.21365	0.00010358	484.81627896702776	34.146	0.77706	33.939	33.549	34.326	-0.20696					61	19	4	0	0	0	0.88442	1	2503	2503		52.299	0	1	2424300			47242	4735	32792	32844	52599	52599					0.13274629956515582
LRQKNAKV	8	Unmodified	_LRQKNAKV_					0	0	0		ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2770080566406	2	478.803626	955.592698	-0.67446	-0.00032293	0.42871	0.00020527	-0.24576	-0.00011767	478.80372996060134	35.072	0.48038	35.05	34.828	35.308	-0.021767					23	12	3	0	0	0	0.027866	1	2667	2667		50.025	23.228	1	272380			47243	7785	32793	32845	52600	52600					0.11312575153931448
LRQLCSSAEVD	11	Unmodified	_LRQLCSSAEVD_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.2637023925781	3	407.536172	1219.58669	0.6674	0.00027199	-2.3908	-0.00097434	-1.7234	-0.00070235	407.53501600682995	21.48	0.86127	21.303	20.967	21.828	-0.17721					47	17	4	0	0	0	0.024801	1	659	659		23.378	0.81632	1	508770			47244	1870;18103	32794	32846	52601	52601					-0.014323559305694289
LRQLDTSL	8	Unmodified	_LRQLDTSL_					0	0	0			REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2718505859375	2	473.271824	944.529095	0.83478	0.00039508	-1.0414	-0.00049288	-0.20666	-9.7804E-05	473.27125837650027	41.128	0.9935	41.128	40.764	41.758	0					58	27	3	0	0	0	0.39824	2	3689	3677;3689		97.473	3.4663	1	3033500	+		47245	33621	32795	32847	52602;52603	52603					0.054611699261727153
LRQLDTSL	8	Unmodified	_LRQLDTSL_					0	0	0			REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2716979980469	2	473.271824	944.529095	0.66277	0.00031367	-0.68928	-0.00032622	-0.026507	-1.2545E-05	473.27136843279555	41.296	1.0004	41.173	40.833	41.834	-0.12317					57	27	4	0	0	0	0.2917	2	3695	3683;3695		115.46	9.5779	1	3068400	+		47246	33621	32795	32847	52604;52605	52605					0.054611699261727153
LRQLLEQP	8	Unmodified	_LRQLLEQP_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-13|DMD;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-9|DMD	nc|ENSG00000198947|P11532-4|DMD;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000198947|P11532-15|DMD	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7952880859375	2	498.795466	995.57638	0.57462	0.00028662	-0.88539	-0.00044163	-0.31077	-0.00015501	498.7949531899924	58.465	1.0957	58.465	57.835	58.93	0					54	29	3	0	0	0	0.81662	1	6627	6627		57.811	0	1	3118200			47247	6301;10259;18652	32796	32848	52606	52606					0.07841449197178463
LRQLLEQP	8	Unmodified	_LRQLLEQP_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-13|DMD;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-9|DMD	nc|ENSG00000198947|P11532-4|DMD;ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000198947|P11532-15|DMD	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.79571533203125	2	498.795466	995.57638	0.21695	0.00010821	-0.66132	-0.00032986	-0.44437	-0.00022165	498.7950714375188	58.26	0.73438	58.351	58.084	58.819	0.091217					41	19	3	0	0	0	0.74904	1	6519	6519		63.306	0	1	3557800			47248	6301;10259;18652	32796	32848	52607	52607					0.07841449197178463
LRQLLPAL	8	Unmodified	_LRQLLPAL_					0	0	0		nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC;ENST00000476046.1_1_10:28884921-28897371:+|nuORF	nc|ENSG00000095787|Q9BTA9-2|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.30535888671875	2	462.30547	922.596387	0.31075	0.00014366	0.27904	0.000129	0.58979	0.00027266	462.3053922999407	66.188	1.8839	66.188	65.566	67.45	0					87	51	4	0	0	0	0.52467	4	7872	7861;7872;7883;7900		83.287	16.705	1	5917800			47249	2038	32797	32849	52608;52609;52610;52611	52609					0.13199244927784548
LRQLLPAL	8	Unmodified	_LRQLLPAL_					0	0	0		nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC;ENST00000476046.1_1_10:28884921-28897371:+|nuORF	nc|ENSG00000095787|Q9BTA9-2|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.30584716796875	2	462.30547	922.596387	-0.19751	-9.1312E-05	0.40477	0.00018713	0.20726	9.5816E-05	462.30555111744115	66.53	1.9994	66.248	65.56	67.559	-0.28149					97	55	2	0	0	0	0.48546	4	7890	7878;7890;7898;7906		86.935	12.418	1	4900700			47250	2038	32797	32849	52612;52613;52614;52615	52613					0.13199244927784548
LRQLLPAL	8	Unmodified	_LRQLLPAL_					0	0	0		nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC;ENST00000476046.1_1_10:28884921-28897371:+|nuORF	nc|ENSG00000095787|Q9BTA9-2|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.30450439453125	2	462.30547	922.596387	0.33111	0.00015307	-0.16818	-7.7751E-05	0.16293	7.5323E-05	462.305248326146	66.247	2.0939	66.277	65.624	67.718	0.030106					101	55	4	0	0	0	0.61897	3	7816	7788;7816;7837		74.517	8.2138	1	6320400			47251	2038	32797	32849	52616;52617;52618	52617					0.13199244927784548
LRQNETELG	9	Unmodified	_LRQNETELG_					0	0	0			REV__ENST00000424695.1_1_1:238654935-238655424:+|nuORF	REV__ENST00000424695.1_1_1:238654935-238655424:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3007202148438	2	530.275095	1058.53564	-1.4125	-0.00074904	-1.0497	-0.00055664	-2.4623	-0.0013057	530.7744267156712	38.83	0.47581	38.665	38.285	38.761	-0.16459					27	12	3	0	0	0	0.024477	1	3226	3226		44.117	15.863	1	224860	+		47252	32237	32798	32850	52619	52619					0.008710630869018132
LRQNQRLHRRR	11	Unmodified	_LRQNQRLHRRR_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.30938720703125	3	511.641691	1531.90324	-0.3075	-0.00015733	-1.121	-0.00057357	-1.4285	-0.0007309	511.6410820875439	103.2	0.61034	103.07	102.91	103.52	-0.12783					19	14	2	0	0	0	0.024879	1	12854	12854		8.7993	0	1	96090	+		47253	28497	32799	32851	52620	52620					0.15856662862461235
LRQQITVL	8	Unmodified	_LRQQITVL_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.8057861328125	2	485.805834	969.597115	-1.2571	-0.00061069	0.93095	0.00045226	-0.32611	-0.00015843	485.8061720813172	34.337	0.67546	34.387	34.047	34.723	0.050255					51	16	4	0	0	0	0.77775	1	2497	2497		60.972	4.2509	1	3636300	+		47254	24185	32800	32852	52621	52621					0.11110039576828967
LRQQQRAL	8	Unmodified	_LRQQQRAL_					0	0	0		ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.31903076171875	2	506.804157	1011.59376	-0.35882	-0.00018185	3.1494	0.0015961	2.7905	0.0014143	506.80549535741955	53.32	0.64233	53.32	53.049	53.691	0					30	17	2	0	0	0	0.027866	1	5726	5726		40.573	7.057	1	898370			47255	6316	32801	32853	52622	52622					0.08842789522839212
LRQRPEWDKHY	11	Unmodified	_LRQRPEWDKHY_					0	0	0		ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2242736816406	3	509.932025	1526.77424	0.011677	5.9544E-06	3.0545	0.0015576	3.0662	0.0015636	510.2678422602866	18.769	0.29248	18.638	18.45	18.743	-0.13147					8	5	2	0	0	0	0.02486	1	322	322		12.957	3.3113	1	24762			47256	6934	32802	32854	52623	52623					0.03192843389024347
LRQSEAVL	8	Unmodified	_LRQSEAVL_					0	0	0			REV__ENSG00000167858|ENST00000338694|TEKT1	REV__ENSG00000167858|ENST00000338694|TEKT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.2662658691406	2	458.266542	914.51853	2.1745	0.00099651	-1.7661	-0.00080936	0.40838	0.00018715	458.26551988692125	24.562	0.69513	24.382	23.983	24.678	-0.18089					29	15	3	0	0	0	0.53523	1	1051	1051		82.305	0	1	500160	+		47257	26199	32803	32855	52624	52624					0.05785187271760606
LRQSEAVL	8	Unmodified	_LRQSEAVL_					0	0	0			REV__ENSG00000167858|ENST00000338694|TEKT1	REV__ENSG00000167858|ENST00000338694|TEKT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.266542	914.51853	-0.17362	-7.9563E-05	0.21762	9.9727E-05	0.044001	2.0164E-05	458.26644744552	24.731	0.54631	24.516	24.218	24.764	-0.2151	0.066954	0.00069688	NaN	82.305	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641560	+		47258	26199	32803	32855							0.05785187271760606
LRQSEAVL	8	Unmodified	_LRQSEAVL_					0	0	0			REV__ENSG00000167858|ENST00000338694|TEKT1	REV__ENSG00000167858|ENST00000338694|TEKT1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	458.266542	914.51853	2.1745	0.00099651	-1.7661	-0.00080936	0.40838	0.00018715	458.26551988692125	24.562	0.69513	24.382	23.983	24.678	-0.18089	-0.066954	-0.0011213	NaN	82.305	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500160	+		47259	26199	32803	32855							0.05785187271760606
LRQVDGEL	8	Unmodified	_LRQVDGEL_					0	0	0			REV__ENSG00000183798|ENST00000332312|EMILIN3	REV__ENSG00000183798|ENST00000332312|EMILIN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2559509277344	2	465.256174	928.497795	0.77889	0.00036238	-0.7905	-0.00036778	-0.011608	-5.4007E-06	465.2557438010755	40.915	0.67923	40.791	40.371	41.051	-0.12317					51	18	4	0	0	0	0.6248	1	3629	3629		73.975	0	1	2050100	+		47260	27612	32804	32856	52625	52625					0.03068596892092046
LRQVDYSN	8	Unmodified	_LRQVDYSN_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7978515625	2	497.751256	993.487959	-0.72055	-0.00035866	-0.82518	-0.00041074	-1.5457	-0.00076939	497.75130116911583	34.334	0.51018	34.384	34.047	34.557	0.050255					18	12	2	0	0	0	0.027866	1	2454	2454		25.45	1.2474	1	74766	+		47261	22949	32805	32857	52626	52626					-0.00904591113294373
LRQVSRDF	8	Unmodified	_LRQVSRDF_					0	0	0			REV__ENST00000515876.5_1_4:941527-949679:+|nuORF	REV__ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8442687988281	2	510.78289	1019.55123	0.073476	3.7531E-05	2.6259	0.0013413	2.6994	0.0013788	511.28702128952494	76.099	0.47	76.11	75.976	76.446	0.011635					16	11	2	0	0	0	0.027866	1	9335	9335		50.025	7.6284	1	98877	+		47262	22930	32806	32858	52627	52627					0.04223394394614388
LRQWQLTL	8	Unmodified	_LRQWQLTL_					0	0	0		ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3115234375	2	529.311284	1056.60801	-1.8693	-0.00098946	-0.66464	-0.0003518	-2.534	-0.0013413	529.3109158842053	29.274	0.82237	29.274	29.032	29.855	0					52	20	4	0	0	0	0.99042	1	1779	1779		38.806	1.647	1	3003400			47263	6827	32807	32859	52628	52628					0.081974419511198
LRRAAAVQ	8	Unmodified	_LRRAAAVQ_					0	0	0			REV__ENST00000229595.5_1_6:119215395-119215593:+|nuORF	REV__ENST00000229595.5_1_6:119215395-119215593:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.756591796875	2	442.774868	883.535184	-0.75644	-0.00033493	-2.8641	-0.0012682	-3.6206	-0.0016031	442.7736448712364	21.18	0.29469	21.18	21.048	21.342	0					7	5	2	0	0	0	0.027866	1	621	621		19.36	0	1	12963	+		47264	29400	32808	32860	52629	52629					0.08875732948354198
LRRAAVSRLG	10	Unmodified	_LRRAAVSRLG_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MSMS	OPSCC_40_ClassI_Rep-3	6	549.8455200195312	2	549.846356	1097.67816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.767	1	19.533	19.033	20.033	-0.23345								0	0	0	0.75325	1	438	438		28.081	1.0342	1				47265	1369	32809	32861	52630	52630					0.1332274033959493
LRRAQGPDG	9	Unmodified	_LRRAQGPDG_					0	0	0		nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000480946.6_1_8:144659238-144660323:-|nuORF	nc|ENSG00000147813|Q6XQN6-3|NAPRT	nc|ENSG00000147813|Q6XQN6-3|NAPRT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2884521484375	2	485.264865	968.515176	0.22549	0.00010942	2.1572	0.0010468	2.3827	0.0011563	485.26350781837994	18.016	0.29407	17.884	17.762	18.056	-0.13147					11	5	3	0	0	0	0.024323	1	229	229		44.117	6.9577	1	28102			47266	5994	32810	32862	52631	52631					0.029659372177547993
LRRARGPS	8	Unmodified	_LRRARGPS_					0	0	0			REV__ENST00000260126.8_1_8:70745059-70745305:-|nuORF	REV__ENST00000260126.8_1_8:70745059-70745305:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.78057861328125	2	456.777942	911.541332	-0.074614	-3.4082E-05	2.7129	0.0012392	2.6383	0.0012051	456.7789352564035	49.316	0.57245	49.163	48.756	49.328	-0.15277					45	15	4	0	0	0	0.30538	1	5081	5081		110.34	0	1	3969100	+		47267	29595	32811	32863	52632	52632					0.08202251179886844
LRRCRTWVD	9	Unmodified	_LRRCRTWVD_					0	0	0			REV__ENST00000457997.1_1_13:19435671-19446003:-|nuORF	REV__ENST00000457997.1_1_13:19435671-19446003:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5576171875	3	402.217108	1203.62949	0.5574	0.0002242	-2.5397	-0.0010215	-1.9823	-0.00079733	402.21565514278376	61.402	0.70194	61.196	60.968	61.67	-0.20599					25	16	2	0	0	0	0.024409	1	6909	6909		49.536	20.959	1	346910	+		47268	32818	32812	32864	52633	52633					0.03582503708162221
LRRCRTWVD	9	Unmodified	_LRRCRTWVD_					0	0	0			REV__ENST00000457997.1_1_13:19435671-19446003:-|nuORF	REV__ENST00000457997.1_1_13:19435671-19446003:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	402.217108	1203.62949	-0.8918	-0.0003587	-3.9867	-0.0016035	-4.8784	-0.0019622	402.2146587545967	61.431	0.96543	61.174	60.418	61.383	-0.25725	0.040881	-0.00063124	NaN	41.427	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311350	+		47269	32818	32812	32864							0.03582503708162221
LRRDYTLDL	9	Unmodified	_LRRDYTLDL_					0	0	0			REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.3057250976562	2	582.822212	1163.62987	0.28281	0.00016483	2.8219	0.0016447	3.1047	0.0018095	582.8237786738425	62.633	0.57951	62.696	62.483	63.062	0.062767					20	13	2	0	0	0	0.023655	1	7209	7209		79.713	0	1	292290	+		47270	37008	32813	32865	52634	52634					0.054602019090452814
LRREETSNQLD	11	Unmodified	_LRREETSNQLD_					0	0	0			REV__ENST00000541942.1_1_8:18068718-18068763:+|nuORF	REV__ENST00000541942.1_1_8:18068718-18068763:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.24554443359375	3	454.232028	1359.67426	1.0358	0.00047051	-0.45188	-0.00020526	0.58395	0.00026525	454.23178776194845	51.156	0.75953	51.045	50.823	51.583	-0.11163					28	19	2	0	0	0	0.024747	1	5306	5306		39.873	18.841	1	204110	+		47271	34782	32814	32866	52635	52635					0.008805612645574001
LRREETSNQLD	11	Unmodified	_LRREETSNQLD_					0	0	0			REV__ENST00000541942.1_1_8:18068718-18068763:+|nuORF	REV__ENST00000541942.1_1_8:18068718-18068763:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	454.232028	1359.67426	1.0126	0.00045997	-0.31926	-0.00014502	0.69337	0.00031495	454.23184458524634	51.218	0.46785	51.038	50.834	51.302	-0.18071	-0.073479	-0.00082044	NaN	39.873	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184640	+		47272	34782	32814	32866							0.008805612645574001
LRRELASV	8	Unmodified	_LRRELASV_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;ENST00000554429.5_1_14:45565874-45579180:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2458801269531	2	472.287808	942.561064	0.10874	5.1355E-05	0.045639	2.1555E-05	0.15438	7.291E-05	472.28767967360864	22.507	0.6524	22.431	22.177	22.829	-0.075296					28	13	3	0	0	0	0.027866	1	758	758		65.803	14.468	1	148250			47273	9420	32815	32867	52636	52636					0.08748582399982752
LRRETGGL	8	Unmodified	_LRRETGGL_					0	0	0		ENST00000222969.9_1_7:99006667-99006763:+|nuORF	ENST00000222969.9_1_7:99006667-99006763:+|nuORF	ENST00000222969.9_1_7:99006667-99006763:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2645263671875	2	451.264333	900.514114	-0.58808	-0.00026538	0.27637	0.00012472	-0.3117	-0.00014066	451.26440910325346	33.013	0.7205	32.847	32.516	33.236	-0.16565					50	17	4	0	0	0	0.88442	1	2302	2302		52.299	0	1	5149700			47274	11192	32816	32868	52637	52637					0.05987722848863086
LRRFGGAF	8	Unmodified	_LRRFGGAF_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.77947998046875	2	462.264136	922.51372	0.86397	0.00039938	-1.4262	-0.00065927	-0.56222	-0.00025989	462.263140708504	68.083	0.80468	68.102	67.549	68.353	0.018913					35	20	3	0	0	0	0.027866	1	8018	8018		44.531	7.372	1	348140			47275	6891	32817	32869	52638	52638					0.04936347919658601
LRRGGVRGR	9	Unmodified	_LRRGGVRGR_					0	0	0		ENST00000368686.1_1_1:153615710-153615842:+|nuORF;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	ENST00000368686.1_1_1:153615710-153615842:+|nuORF	ENST00000368686.1_1_1:153615710-153615842:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8245849609375	2	513.823215	1025.63188	0.021992	1.13E-05	2.2925	0.0011779	2.3145	0.0011892	513.8245595828838	39.531	0.87872	39.531	39.183	40.062	0					70	24	4	0	0	0	0.62163	1	3436	3436		51.335	3.4199	1	12095000			47276	6829	32818	32870	52639	52639					0.12008720228163838
LRRGRPAGL	9	Unmodified	_LRRGRPAGL_					0	0	0		ENST00000557285.1_1_20:25057179-25058535:-|nuORF	ENST00000557285.1_1_20:25057179-25058535:-|nuORF	ENST00000557285.1_1_20:25057179-25058535:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.317138671875	2	498.314692	994.614831	-0.8076	-0.00040244	4.1166	0.0020513	3.309	0.0016489	498.31660702549084	79.305	1.4196	79.133	78.819	80.239	-0.17226					82	33	3	0	0	0	0.40179	1	9808	9808		65.803	16.362	1	1259800			47277	16729	32819	32871	52640	52640					0.11730799622353061
LRRGWSIF	8	Unmodified	_LRRGWSIF_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7722778320312	2	517.798343	1033.58213	0.49327	0.00025541	-2.6678	-0.0013814	-2.1746	-0.001126	517.7971278938138	72.313	0.62885	72.048	71.799	72.428	-0.26479					25	14	3	0	0	0	0.027866	1	8485	8485		38.806	0	1	99874			47278	9789	32820	32872	52641	52641					0.06668592499499937
LRRHLPFL	8	Unmodified	_LRRHLPFL_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2780151367188	2	526.329811	1050.64507	-0.43308	-0.00022794	-0.60964	-0.00032087	-1.0427	-0.00054882	526.3295449340654	87.793	0.76505	87.793	87.532	88.297	0					33	18	2	0	0	0	0.027866	1	11106	11106		29.842	3.1486	1	169410			47279	6452	32821	32873	52642	52642					0.12177158287545353
LRRHLPFL	8	Unmodified	_LRRHLPFL_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.329811	1050.64507	0.19697	0.00010367	-1.1635	-0.00061239	-0.96654	-0.00050872	526.3292391320623	87.834	0.76282	87.799	87.489	88.252	-0.035355	-0.012538	0.00023487	NaN	39.021	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212540			47280	6452	32821	32873							0.12177158287545353
LRRHLPFL	8	Unmodified	_LRRHLPFL_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.329811	1050.64507	0.93294	0.00049103	-2.2416	-0.0011798	-1.3087	-0.00068881	526.3287295150835	87.824	0.76643	87.843	87.515	88.281	0.018555	0.030952	-0.00090003	NaN	39.021	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181690			47281	6452	32821	32873							0.12177158287545353
LRRHTEVT	8	Unmodified	_LRRHTEVT_					0	0	0		ENST00000300584.7_1_15:78295800-78305260:-|nuORF	ENST00000300584.7_1_15:78295800-78305260:-|nuORF	ENST00000300584.7_1_15:78295800-78305260:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3108215332031	2	506.28834	1010.56213	-0.52206	-0.00026431	4.118	0.0020849	3.596	0.0018206	506.7931058283004	48.866	0.81253	48.713	48.193	49.006	-0.15277					52	22	4	0	0	0	0.027866	1	4936	4936		40.573	0	1	1389500			47282	11906	32822	32874	52643	52643					0.057267967688858334
LRRIIISP	8	Unmodified	_LRRIIISP_					0	0	0			REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.7881164550781	2	484.324194	966.633835	-0.4324	-0.00020942	0.23518	0.0001139	-0.19722	-9.5519E-05	484.324127284286	43.262	0.52305	43.025	42.759	43.282	-0.23736					25	13	3	0	0	0	0.027866	1	3900	3900		30.504	13.139	1	231100	+		47283	29602	32823	32875	52644	52644					0.149183361934206
LRRIIISP	8	Unmodified	_LRRIIISP_					0	0	0			REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.324194	966.633835	0.032021	1.5509E-05	0.067198	3.2546E-05	0.099219	4.8054E-05	484.3239793840779	43.107	0.40317	42.995	42.815	43.218	-0.11253	-0.043548	-0.00016433	NaN	30.504	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267880	+		47284	29602	32823	32875							0.149183361934206
LRRIIISP	8	Unmodified	_LRRIIISP_					0	0	0			REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.324194	966.633835	-0.52852	-0.00025598	0.38866	0.00018824	-0.13986	-6.7738E-05	484.32435918838405	43.321	0.47062	43.095	42.873	43.344	-0.22597	0.056811	0.00014705	NaN	30.504	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183840	+		47285	29602	32823	32875							0.149183361934206
LRRKQIKF	8	Unmodified	_LRRKQIKF_					0	0	0		ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2570190429688	2	544.856193	1087.69783	-0.84215	-0.00045885	0.75421	0.00041094	-0.087938	-4.7913E-05	544.8564685439691	25.447	0.49907	25.22	25.018	25.517	-0.22683					25	11	3	0	0	0	0.027866	1	1220	1220		13.775	4.953	1	256190			47286	8587	32824	32876	52645	52645					0.1574911635036642
LRRKRRRPKLD	11	Unmodified	_LRRKRRRPKLD_					0	0	0			REV__ENST00000286827.7_1_21:32711646-32711721:-|nuORF	REV__ENST00000286827.7_1_21:32711646-32711721:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7712097167969	3	498.65857	1492.95388	-0.40284	-0.00020088	1.8323	0.00091372	1.4295	0.00071284	498.99291313878814	31.265	0.19429	31.08	30.905	31.099	-0.18503					5	4	2	0	0	0	0.024899	1	2043	2043		2.8518	1.5299	1	53517	+		47287	29920	32825	32877	52646	52646					0.22712192187486835
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		nc|ENSG00000114812|P32241-2|VIPR1;ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.659423828125	3	545.658681	1633.95422	-0.39774	-0.00021703	3.7709	0.0020576	3.3732	0.0018406	545.6606020993233	104.67	0.87855	104.67	104.24	105.12	0					49	26	2	0	0	0	1.1135	1	13454	13454		3.2113	2.8708	1	92611			47288	18188	32826	32878	52647	52647					0.16259611907344151
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		nc|ENSG00000114812|P32241-2|VIPR1;ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	545.658681	1633.95422	-0.62105	-0.00033888	3.9133	0.0021353	3.2922	0.0017964	545.6608011565849	104.64	0.811	104.64	104.32	105.13	0.00096893	-0.022866	0.00046186	NaN	3.2113	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79382			47289	18188	32826	32878							0.16259611907344151
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		nc|ENSG00000114812|P32241-2|VIPR1;ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	545.658681	1633.95422	-0.62647	-0.00034184	2.5428	0.0013875	1.9163	0.0010457	545.6606627354612	104.52	1.595	104.52	103.62	105.21	-0.0015945	-0.1444	-0.0017816	NaN	3.2113	89	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77862			47290	18188	32826	32878							0.16259611907344151
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		nc|ENSG00000114812|P32241-2|VIPR1;ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	545.658681	1633.95422	-0.093383	-5.0955E-05	3.2821	0.0017909	3.1887	0.0017399	545.6604342010489	104.84	0.70104	104.71	104.33	105.03	-0.12561	0.044346	-0.00057146	NaN	3.2113	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58179			47291	18188	32826	32878							0.16259611907344151
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		nc|ENSG00000114812|P32241-2|VIPR1;ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	545.658681	1633.95422	-0.79839	-0.00043565	4.037	0.0022028	3.2386	0.0017671	545.6606959477972	104.84	0.68671	104.71	104.39	105.07	-0.13099	0.042131	0.00066428	NaN	3.2113	24	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35417			47292	18188	32826	32878							0.16259611907344151
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		nc|ENSG00000114812|P32241-2|VIPR1;ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	545.658681	1633.95422	-0.054005	-2.9469E-05	3.3494	0.0018276	3.2954	0.0017982	545.6604227562656	104.91	0.64037	104.74	104.43	105.07	-0.16484	0.074651	-0.0004612	NaN	3.2113	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50853			47293	18188	32826	32878							0.16259611907344151
LRRLAEETD	9	Unmodified	_LRRLAEETD_					0	0	0			REV__nc|ENSG00000198160|Q8N108-17|MIER1	REV__nc|ENSG00000198160|Q8N108-17|MIER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3193359375	2	551.796195	1101.57784	-0.16595	-9.1568E-05	3.3287	0.0018367	3.1627	0.0017452	551.7979145241524	63.663	0.85339	63.435	63.055	63.908	-0.22773					33	21	2	0	0	0	0.024447	1	7264	7264		32.812	0	1	930340	+		47294	28391	32827	32879	52648	52648					0.031110384952853565
LRRLDLVE	8	Unmodified	_LRRLDLVE_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.310546875	2	507.308741	1012.60293	-0.0085723	-4.3488E-06	3.347	0.001698	3.3384	0.0016936	507.31027372325445	31.761	1.0366	31.521	31.259	32.296	-0.2394					70	24	4	0	0	0	0.47665	1	2158	2158		87.754	2.8388	1	2689500	+		47295	20383	32828	32880	52649	52649					0.0971313808852301
LRRLDLVE	8	Unmodified	_LRRLDLVE_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.31024169921875	2	507.308741	1012.60293	-0.16843	-8.5448E-05	3.5575	0.0018048	3.3891	0.0017193	507.3103531967286	31.729	1.2953	31.544	31.208	32.504	-0.18503					77	30	4	0	0	0	0.83003	1	2146	2146		56.721	5.3856	1	2286300	+		47296	20383	32828	32880	52650	52650					0.0971313808852301
LRRMLFIN	8	Unmodified	_LRRMLFIN_					0	0	0		ENST00000438413.5_1_1:155160311-155162038:-|nuORF	ENST00000438413.5_1_1:155160311-155162038:-|nuORF	ENST00000438413.5_1_1:155160311-155162038:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	531.815679	1061.6168	0.30294	0.00016111	1.6063	0.00085425	1.9092	0.0010154	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	1.0574	1	10975	10975		25.45	2.4077	1	3405600			47297	14311	32829	32881	52651	52651					0.08846092315957321
LRRNYRCT	8	Unmodified	_LRRNYRCT_					0	0	0		nc|ENSG00000165061|Q9H898-2|ZMAT4;ENSG00000165061|ENST00000297737|ZMAT4	nc|ENSG00000165061|Q9H898-2|ZMAT4	nc|ENSG00000165061|Q9H898-2|ZMAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8052368164062	2	541.287817	1080.56108	-0.66452	-0.0003597	-0.57606	-0.00031181	-1.2406	-0.00067151	541.2877352961452	52.95	0.41666	52.803	52.569	52.985	-0.14724					17	10	2	0	0	0	0.027866	1	5660	5660		30.504	0	1	414240			47298	7360	32830	32882	52652	52652					0.02402259128325568
LRRPPARSGL	10	Unmodified	_LRRPPARSGL_					0	0	0			REV__ENST00000503051.1_1_4:53525618-53527100:+|nuORF	REV__ENST00000503051.1_1_4:53525618-53527100:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.8455810546875	2	561.846356	1121.67816	0.62451	0.00035088	-1.745	-0.00098044	-1.1205	-0.00062956	561.8452346011154	95.499	1.1193	95.376	95.029	96.148	-0.12251					80	25	4	0	0	0	1.0719	1	11801	11801		36.447	0.82846	1	1450600	+		47299	33943	32831	32883	52653	52653					0.12218740339585565
LRRPPSILL	9	Unmodified	_LRRPPSILL_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.8218994140625	2	532.850576	1063.6866	-0.64116	-0.00034164	1.9924	0.0010616	1.3512	0.00072	533.3534933679782	69.879	0.16077	69.891	69.751	69.912	0.012421					5	3	2	0	0	0	0.024523	1	8351	8351		37.159	0	1	44196	+		47300	29247	32832	32884	52654	52654					0.15730294256240995
LRRPVNQV	8	Unmodified	_LRRPVNQV_					0	0	0		nc|ENSG00000154134|Q96MS0-2|ROBO3;ENSG00000154134|ENST00000397801|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7815246582031	2	491.30125	980.587947	-0.74057	-0.00036385	1.8621	0.00091486	1.1215	0.00055102	491.3020549886024	62.603	0.40181	62.603	62.409	62.811	0					16	9	2	0	0	0	0.027866	1	7307	7307		19.36	0	1	369080			47301	6385	32833	32885	52655	52655					0.09687691011174593
LRRQDDHY	8	Unmodified	_LRRQDDHY_					0	0	0			REV__nc|ENSG00000214711|A8MX76-2|CAPN14	REV__nc|ENSG00000214711|A8MX76-2|CAPN14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3193359375	2	551.773054	1101.53155	-0.25339	-0.00013981	2.443	0.001348	2.1896	0.0012081	551.7741250270318	63.976	0.40353	63.748	63.624	64.027	-0.22773					13	9	2	0	0	0	0.027866	1	7264	7264		35.618	18.253	1	107820	+		47302	28785	32834	32886	52656	52656					-0.015149816161510898
LRRQEKTW	8	Unmodified	_LRRQEKTW_					0	0	0			REV__ENSG00000009694|ENST00000371130|TENM1	REV__ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.5916748046875	2	558.817264	1115.61998	-0.44679	-0.00024967	-0.91918	-0.00051365	-1.366	-0.00076332	558.8166167930503	42.08	0.65134	41.848	41.583	42.234	-0.23186					37	17	4	0	0	0	0.027866	1	3808	3808		42.474	8.9589	1	866410	+		47303	19893	32835	32887	52657	52657					0.06679058694317064
LRRRGKVG	8	Unmodified	_LRRRGKVG_					0	0	0		ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.31024169921875	2	471.30941	940.604266	3.9418	0.0018578	-4.2708	-0.0020129	-0.32902	-0.00015507	471.3074177863345	17.226	0.83264	17.226	17.06	17.892	0					41	16	4	0	0	0	1.0574	1	163	163		21.702	0	1	1547100			47304	13681	32836	32888	52658	52658					0.13158816967938947
LRRRGKVG	8	Unmodified	_LRRRGKVG_					0	0	0		ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.30963134765625	2	471.30941	940.604266	0.8435	0.00039755	-1.0028	-0.00047265	-0.15934	-7.5096E-05	471.30888240120373	17.351	1.1935	17.208	17.048	18.241	-0.14278					46	24	4	0	0	0	1.0572	1	160	160		28.254	0	1	1134700			47305	13681	32836	32888	52659	52659					0.13158816967938947
LRRRGRPT	8	Unmodified	_LRRRGRPT_					0	0	0		ENST00000329957.6_1_11:1492578-1502080:-|nuORF	ENST00000329957.6_1_11:1492578-1502080:-|nuORF	ENST00000329957.6_1_11:1492578-1502080:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.3191223144531	2	506.317766	1010.62098	-0.017754	-8.9894E-06	1.9658	0.00099532	1.9481	0.00098633	506.3187884606247	52.871	1.0949	52.967	52.641	53.736	0.095669					90	29	5	0	0	0	0.68535	1	5614	5614		68.485	16.186	1	10947000			47306	12323	32837	32889	52660	52660					0.11609317853890389
LRRRHRGRTSF	11	Unmodified	_LRRRHRGRTSF_					0	0	0			REV__ENST00000322723.8_1_2:232329060-232329180:-|nuORF	REV__ENST00000322723.8_1_2:232329060-232329180:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2822265625	3	481.283503	1440.82868	0.24413	0.0001175	-0.37326	-0.00017964	-0.12913	-6.2146E-05	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0978	1	13042	13042		11.932	0.47776	1	1053600	+		47307	30365	32838	32890	52661	52661					0.12589900051102632
LRRRLCVWVWV	11	Unmodified	_LRRRLCVWVWV_					0	0	0			REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	REV__ENST00000478137.1_1_7:1199695-1199887:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.95880126953125	3	495.958969	1484.85508	0.11895	5.8993E-05	0.38956	0.00019321	0.50851	0.0002522	495.9586334061718	102.37	1.6075	102.2	101.47	103.08	-0.17178					122	38	5	0	0	0	1.1027	1	12673	12673		10.587	0.94066	1	585730	+		47308	33353	32839	32891	52662	52662					0.1320445289820782
LRRRLQLC	8	Unmodified	_LRRRLQLC_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2528686523438	2	529.324202	1056.63385	0.69941	0.00037022	-4.0839	-0.0021617	-3.3845	-0.0017915	529.3219698803845	36.056	0.16796	35.858	35.742	35.91	-0.19829					6	4	2	0	0	0	0.027866	1	2783	2783		35.201	1.6851	1	190730	+		47309	23795	32840	32892	52663	52663					0.10780012921759408
LRRRRPRHRRR	11	Unmodified	_LRRRRPRHRRR_					0	0	0			REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF	REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9228515625	4	404.511075	1614.01519	-0.038466	-1.556E-05	1.7067	0.00069037	1.6682	0.00067481	404.51271262519055	27.013	0.29835	26.771	26.529	26.828	-0.24217					8	6	2	0	0	0	0.02489	1	1446	1446		3.026	2.7137	1	27753	+		47310	34403	32841	32893	52664	52664					0.23274561730136156
LRRRRRSRRYL	11	Unmodified	_LRRRRRSRRYL_					0	0	0		ENST00000245157.9_1_16:56553867-56553957:-|nuORF	ENST00000245157.9_1_16:56553867-56553957:-|nuORF	ENST00000245157.9_1_16:56553867-56553957:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	3	530.001219	1586.98183	-1.2059	-0.00063912	-4.3287	-0.0022942	-5.5346	-0.0029333	530.3345812602807	73.257	0.25293	73.257	73.146	73.399	0					7	6	2	0	0	0	0.024898	1	8936	8936		5.6988	5.3583	1	312460			47311	11309	32842	32894	52665	52665					0.2118151516758644
LRRRTRRMRRR	11	Unmodified	_LRRRTRRMRRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2864990234375	3	538.337836	1611.99168	1.2467	0.00067113	-2.8108	-0.0015132	-1.5641	-0.00084203	538.3362440808617	16.765	0.32136	16.611	16.485	16.806	-0.15376					10	6	2	0	0	0	0.024904	1	121	121		1.523	0.20106	1	61967	+		47312	32208	32843	32895	52666	52666					0.21016379901288929
LRRRTRRMRRR	11	Unmodified	_LRRRTRRMRRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3375244140625	3	538.337836	1611.99168	-0.5209	-0.00028042	-0.95802	-0.00051574	-1.4789	-0.00079616	538.6717959220864	16.722	0.24348	16.514	16.418	16.662	-0.20777					13	5	3	0	0	0	1.1135	1	89	89		1.3219	1.3219	1	41661	+		47313	32208	32843	32895	52667	52667					0.21016379901288929
LRRRTRRMRRR	11	Unmodified	_LRRRTRRMRRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	538.337836	1611.99168	-0.5209	-0.00028042	-0.95802	-0.00051574	-1.4789	-0.00079616	538.6717959220864	16.722	0.24348	16.514	16.418	16.662	-0.20777	-0.048347	0.0012399	NaN	1.523	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41661	+		47314	32208	32843	32895							0.21016379901288929
LRRSKPVHGT	10	Unmodified	_LRRSKPVHGT_					0	0	0		ENST00000273153.9_1_3:39186519-39186636:-|nuORF	ENST00000273153.9_1_3:39186519-39186636:-|nuORF	ENST00000273153.9_1_3:39186519-39186636:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8436279296875	2	575.843813	1149.67307	-0.59889	-0.00034487	-0.87215	-0.00050222	-1.471	-0.00084709	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	1.0393	1	10953	10953		40.778	1.5253	1	2151700			47315	11660	32844	32896	52668	52668					0.10422436476960684
LRRVLAVQE	9	Unmodified	_LRRVLAVQE_					0	0	0			REV__BOP1|p.Q208L|1|0.31|ENSG00000261236|chr8:144264754-144264754|T/A|missense_variant	REV__BOP1|p.Q208L|1|0.31|ENSG00000261236|chr8:144264754-144264754|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.3078002929688	2	542.33529	1082.65603	-0.002102	-1.14E-06	0.89189	0.0004837	0.88979	0.00048256	542.3355958817807	80.012	0.12865	79.792	79.701	79.83	-0.21922					4	2	2	0	0	0	0.024539	1	9592	9592		20.947	0.4651	1	26410	+		47316	19216	32845	32897	52669	52669					0.11800515871163952
LRRVRDPT	8	Unmodified	_LRRVRDPT_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3190002441406	2	506.804157	1011.59376	-0.91767	-0.00046508	3.6135	0.0018314	2.6959	0.0013663	506.8057812310133	53.428	0.69173	53.281	52.91	53.602	-0.14723					33	18	2	0	0	0	0.027866	1	5695	5695		47.916	7.1374	1	874680			47317	18594	32846	32898	52670	52670					0.08842789522839212
LRRVRDPT	8	Unmodified	_LRRVRDPT_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3190002441406	2	506.804157	1011.59376	-0.1913	-9.6953E-05	2.6568	0.0013465	2.4654	0.0012495	506.8052128274111	52.878	0.34146	52.731	52.607	52.948	-0.14723					12	8	2	0	0	0	0.027866	1	5695	5695		47.916	7.1374	1	243070			47318	18594	32846	32898	52671	52671					0.08842789522839212
LRRVRDPT	8	Unmodified	_LRRVRDPT_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.32012939453125	2	506.804157	1011.59376	0.18088	9.1673E-05	1.9854	0.0010062	2.1663	0.0010979	506.8049358636631	52.664	0.33726	52.756	52.602	52.939	0.091942					12	8	2	0	0	0	0.027866	1	5603	5603		38.806	13.356	1	271220			47319	18594	32846	32898	52672	52672					0.08842789522839212
LRRWFTLWRWW	11	Unmodified	_LRRWFTLWRWW_					0	0	0			REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2	REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.7144775390625	4	427.236119	1704.91537	-0.41797	-0.00017857	-0.5523	-0.00023596	-0.97027	-0.00041453	427.2351357204893	30.459	0.50027	30.281	30.083	30.583	-0.17818					21	11	3	0	0	0	0.024904	1	1950	1950		0.37141	0.37141	1	100700	+		47320	36864	32847	32899	52673	52673					0.09110886552957709
LRRWPTTL	8	Unmodified	_LRRWPTTL_					0	0	0			REV__ENST00000354588.7_1_11:62437223-62439219:-|nuORF	REV__ENST00000354588.7_1_11:62437223-62439219:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7928466796875	2	521.811451	1041.60835	-1.2166	-0.00063482	3.8258	0.0019964	2.6093	0.0013615	521.8132383456822	44.809	0.62776	44.809	44.451	45.079	0					36	17	3	0	0	0	0.027866	1	4337	4337		29.15	0	1	429260	+		47321	30757	32848	32900	52674	52674					0.0892086167098114
LRRWSSSW	8	Unmodified	_LRRWSSSW_					0	0	0		nc|ENSG00000144524|Q9H9Q2-3|COPS7B	nc|ENSG00000144524|Q9H9Q2-3|COPS7B	nc|ENSG00000144524|Q9H9Q2-3|COPS7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8167724609375	2	539.283057	1076.55156	-1.8183	-0.00098055	-0.39733	-0.00021427	-2.2156	-0.0011948	539.2823032342787	44.054	0.30177	43.835	43.634	43.936	-0.21939					10	7	2	0	0	0	0.027866	1	4038	4038		31.955	0	1	138940			47322	18357	32849	32901	52675	52675					0.016348141144590045
LRRYAQKI	8	Unmodified	_LRRYAQKI_					0	0	0			REV__ENST00000535730.1_1_11:73662114-73670750:+|nuORF	REV__ENST00000535730.1_1_11:73662114-73670750:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3075561523438	2	524.324725	1046.6349	-0.097266	-5.0999E-05	-1.1981	-0.00062819	-1.2954	-0.00067919	524.325182560147	71.331	0.19111	71.331	71.223	71.415	0					6	4	2	0	0	0	0.027866	1	8654	8654		60.294	4.7898	1	71752	+		47323	27962	32850	32902	52676	52676					0.11344550562307631
LRRYCLAVL	9	Unmodified	_LRRYCLAVL_					0	0	0		ENST00000488971.1_1_2:86683605-86693535:+|nuORF;ENST00000409556.5_1_2:86684189-86693535:+|nuORF	ENST00000488971.1_1_2:86683605-86693535:+|nuORF	ENST00000488971.1_1_2:86683605-86693535:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8311767578125	2	553.828786	1105.64302	0.11487	6.3616E-05	2.002	0.0011087	2.1168	0.0011724	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	0.75282	1	11345	11345		42.474	1.6963	1	4870500			47324	15399	32851	32903	52677	52677					0.09442361487435846
LRSADSSIH	9	Unmodified	_LRSADSSIH_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.29351806640625	2	493.256705	984.498858	-0.24301	-0.00011987	1.4213	0.00070107	1.1783	0.0005812	493.2570305809115	19.874	0.2312	19.755	19.592	19.823	-0.1186					7	4	2	0	0	0	0.024292	1	447	447		58.782	7.4465	1	12298	+		47325	22383	32852	32904	52678	52678					0.0059881126099980975
LRSAVKKLA	9	Unmodified	_LRSAVKKLA_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.3294982910156	2	493.329476	984.6444	2.0787	0.0010255	-2.5907	-0.0012781	-0.51199	-0.00025258	493.3281727732496	24.316	1.0079	24.136	23.671	24.678	-0.18089					63	22	4	0	0	0	0.62163	1	1036	1036		51.335	5.3835	1	4478600	+		47326	31835	32853	32905	52679	52679					0.15146318847826024
LRSAVVPR	8	Unmodified	_LRSAVVPR_					0	0	0		ENST00000480284.1_1_7:156803528-156803816:+|nuORF	ENST00000480284.1_1_7:156803528-156803816:+|nuORF	ENST00000480284.1_1_7:156803528-156803816:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.2850341796875	2	449.285069	896.555585	-0.53756	-0.00024152	0.47144	0.00021181	-0.066121	-2.9707E-05	449.28517003425094	34.829	1.0236	34.879	34.441	35.465	0.050255					63	26	3	0	0	0	0.6248	1	2581	2581		73.975	13.003	1	2745200			47327	15189	32854	32906	52680	52680					0.10316903608179473
LRSCLAIAE	9	Unmodified	_LRSCLAIAE_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.27008056640625	2	488.268227	974.521901	1.529	0.00074656	4.276	0.0020878	5.805	0.0028344	488.27039060874796	23.065	0.54526	22.874	22.664	23.209	-0.19117					29	11	3	0	0	0	0.23085	1	846	846		84.916	2.165	1	513570	+		47328	20702	32855	32907	52681	52681					0.03362114054095855
LRSCLAIAE	9	Unmodified	_LRSCLAIAE_					0	0	0			REV__ENSG00000082701|ENST00000264235|GSK3B	REV__ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	488.268227	974.521901	1.529	0.00074656	4.276	0.0020878	5.805	0.0028344	488.27039060874796	23.065	0.54526	22.874	22.664	23.209	-0.19117	0.040829	-0.0015541	NaN	84.916	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513570	+		47329	20702	32855	32907							0.03362114054095855
LRSETMER	8	Unmodified	_LRSETMER_					0	0	0			REV__chr10:52454749-52454832|280|18.75|0.05|8.46|-|0|TE_info:L2a,L2a_dup105589,L2,LINE,donor,+,52454832,52455679|LNCAROD,None|9	REV__chr10:52454749-52454832|280|18.75|0.05|8.46|-|0|TE_info:L2a,L2a_dup105589,L2,LINE,donor,+,52454832,52455679|LNCAROD,None|9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2881774902344	2	511.258391	1020.50223	0.38951	0.00019914	0.75389	0.00038543	1.1434	0.00058457	511.2591622229812	71.903	0.45409	71.614	71.234	71.688	-0.28858					20	11	2	0	0	0	0.027866	1	8690	8690		33.516	14.156	1	315350	+		47330	19343	32856	32908	52682	52682					-0.007202619566555768
LRSFRLLRVFK	11	Unmodified	_LRSFRLLRVFK_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant;ENSG00000185313|ENST00000449082|SCN10A	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000183873|Q14524-5|SCN5A;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant;ENSG00000185313|ENST00000449082|SCN10A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.29095458984375	3	478.973384	1433.89832	-0.33798	-0.00016188	2.1453	0.0010275	1.8073	0.00086565	479.3086060020991	46.928	0.37746	46.987	46.729	47.106	0.059097					15	9	2	0	0	0	0.024856	1	4627	4627		13.508	3.8618	1	86718			47331	7940;6337;18631;5026;9288;37863;816;9427	32857	32909	52683	52683					0.19872965947115517
LRSGIVMEV	9	Unmodified	_LRSGIVMEV_					0	0	0		ENSG00000183631|ENST00000371125|PRR32	ENSG00000183631|ENST00000371125|PRR32	ENSG00000183631|ENST00000371125|PRR32	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2852478027344	2	502.283877	1002.5532	-1.0429	-0.00052383	1.688	0.00084787	0.64512	0.00032404	502.28470446313315	44.202	0.89795	44.202	43.621	44.519	0					62	25	4	0	0	0	0.45795	1	4180	4180		62.107	3.3255	1	19682000			47332	9253	32858	32910	52684	52684					0.052026870882059484
LRSGRLHPRR	10	Unmodified	_LRSGRLHPRR_					0	0	0			REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.376953125	2	624.381429	1246.7483	0.70574	0.00044065	-3.3614	-0.0020988	-2.6556	-0.0016581	624.3791936410059	100.71	0.53059	100.58	100.28	100.81	-0.13364					27	14	2	0	0	0	1.0992	1	12481	12481		32.812	9.2897	1	344240	+		47333	34480	32859	32911	52685	52685					0.1348003872803929
LRSGRLHPRR	10	Unmodified	_LRSGRLHPRR_					0	0	0			REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.3782348632812	2	624.381429	1246.7483	-0.38101	-0.0002379	-1.9949	-0.0012456	-2.3759	-0.0014835	624.3801142496206	100.73	0.45973	100.6	100.31	100.77	-0.12504					31	13	3	0	0	0	1.1088	1	12507	12507		31.53	4.8369	1	407080	+		47334	34480	32859	32911	52686	52686					0.1348003872803929
LRSKVTAIKS	10	Unmodified	_LRSKVTAIKS_					0	0	0		nc|ENSG00000105829|O15155-2|BET1;ENSG00000105829|ENST00000222547|BET1	nc|ENSG00000105829|O15155-2|BET1	nc|ENSG00000105829|O15155-2|BET1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.75927734375	2	551.850773	1101.68699	0.097435	5.377E-05	3.1856	0.001758	3.2831	0.0018118	551.852562547198	52.029	0.29323	51.845	51.741	52.035	-0.18404					11	7	2	0	0	0	0.03519	1	5392	5392		21.686	15.373	1	104020			47335	2725	32860	32912	52687	52687					0.14021669185399332
LRSLNMRE	8	Unmodified	_LRSLNMRE_					0	0	0			REV__nc|ENSG00000144935|P48995-2|TRPC1	REV__nc|ENSG00000144935|P48995-2|TRPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.77374267578125	2	509.776751	1017.53895	-0.94689	-0.0004827	-3.4742	-0.0017711	-4.4211	-0.0022538	509.77501619806185	44.626	1.116	44.382	44.115	45.231	-0.2444					67	29	4	0	0	0	0.53593	1	4187	4187		82.241	2.7895	1	8761000	+		47336	24375	32861	32913	52688	52688					0.030880346599246877
LRSLQALSN	9	Unmodified	_LRSLQALSN_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2910461425781	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.80735	1	10249	10249		38.754	2.3069	1	10571000			47337	7556	32862	32914	52689	52689					0.06628261191781348
LRSPPAIL	8	Unmodified	_LRSPPAIL_					0	0	0		ENST00000567728.1_1_16:50770637-50774611:-|nuORF	ENST00000567728.1_1_16:50770637-50774611:-|nuORF	ENST00000567728.1_1_16:50770637-50774611:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.77667236328125	2	433.776545	865.538538	0.23225	0.00010074	-0.12163	-5.2761E-05	0.11062	4.7982E-05	433.77633686022864	29.506	1.0126	29.356	29.044	30.056	-0.14952					62	23	4	0	0	0	0.71833	1	1792	1792		65.803	0	1	2775200			47338	16966	32863	32915	52690	52690					0.10038983002368695
LRSQEKLR	8	Unmodified	_LRSQEKLR_					0	0	0		ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.310791015625	2	515.311815	1028.60908	1.1229	0.00057866	-2.0475	-0.0010551	-0.92454	-0.00047643	515.3108501398033	20.119	1.0239	19.919	19.653	20.676	-0.2001					53	20	5	0	0	0	0.53523	1	486	486		82.305	5.4584	1	7938700			47339	2439	32864	32916	52691	52691					0.09591656320026232
LRSQHVAKILS	11	Unmodified	_LRSQHVAKILS_					0	0	0			REV__ENSG00000189127|ENST00000338682|ANKRD34B	REV__ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	626.3798828125	2	626.380229	1250.7459	-0.014204	-8.8969E-06	-0.80991	-0.00050731	-0.82411	-0.00051621	626.3796706228852	104.33	1.1031	104.33	103.94	105.04	0					82	30	5	0	0	0	1.0501	1	13406	13406		35.152	16.049	1	2455700	+		47340	28099	32865	32917	52692	52692					0.13056145479754377
LRSQLGDRS	9	Unmodified	_LRSQLGDRS_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8258666992188	2	516.283254	1030.55196	-0.23049	-0.000119	1.102	0.00056895	0.87151	0.00044995	516.285388585981	55.947	1.432	55.947	55.536	56.968	0					81	40	3	0	0	0	0.024209	1	6345	6345		66.429	8.618	1	652830	+		47341	20462	32866	32918	52693	52693					0.03790189043661485
LRSQLGDRS	9	Unmodified	_LRSQLGDRS_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.283254	1030.55196	-0.27488	-0.00014192	3.1718	0.0016375	2.8969	0.0014956	516.2853480683012	56.047	0.87918	55.891	55.442	56.321	-0.15601	0.011741	0.00043246	NaN	56.721	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	781240	+		47342	20462	32866	32918							0.03790189043661485
LRSQQSKAF	9	Unmodified	_LRSQQSKAF_					0	0	0			REV__ENSG00000153157|ENST00000283141|SYCP2L	REV__ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.26611328125	2	532.795998	1063.57744	-0.31869	-0.0001698	0.017383	9.2616E-06	-0.30131	-0.00016054	533.2995044322123	33.75	0.64267	33.523	33.157	33.8	-0.22697					32	15	4	0	0	0	0.024523	1	2456	2456		10.265	0	1	145400	+		47343	24889	32867	32919	52694	52694					0.048196635660815446
LRSRQAPDVVT	11	Unmodified	_LRSRQAPDVVT_					0	0	0			REV__nc|nan|Q5SNV9-2|C1orf167	REV__nc|nan|Q5SNV9-2|C1orf167	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3488159179688	2	621.351668	1240.68878	-1.0889	-0.0006766	-1.5777	-0.00098033	-2.6667	-0.0016569	621.3504396083733	102.94	0.41422	102.81	102.63	103.05	-0.12783					24	9	3	0	0	0	1.0648	1	12806	12806		17.468	5.2613	1	2566500	+		47344	28817	32868	32920	52695	52695					0.07806678203360207
LRSSSFPPQ	9	Unmodified	_LRSSSFPPQ_					0	0	0			REV__ENST00000413427.6_1_3:170077427-170077517:+|nuORF	REV__ENST00000413427.6_1_3:170077427-170077517:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.77459716796875	2	509.769448	1017.52434	-1.216	-0.0006199	-1.5369	-0.00078348	-2.753	-0.0014034	509.7685343915224	44.701	0.54396	44.552	44.322	44.866	-0.1488					31	15	3	0	0	0	0.024447	1	4234	4234		40.778	7.9657	1	390070	+		47345	32023	32869	32921	52696	52696					0.01628285783431238
LRSTGHLRLK	10	Unmodified	_LRSTGHLRLK_					0	0	0			REV__ENST00000375150.6_1_6:32116492-32119883:-|nuORF	REV__ENST00000375150.6_1_6:32116492-32119883:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.8667602539062	2	590.867289	1179.72002	-0.3811	-0.00022518	-1.4461	-0.00085448	-1.8272	-0.0010797	590.8667438142205	102.45	1.104	102.28	101.97	103.08	-0.17178					75	26	5	0	0	0	1.1197	1	12744	12744		20.947	0.95016	1	5015400	+		47346	29304	32870	32922	52697	52697					0.13735296028107769
LRSTQIATV	9	Unmodified	_LRSTQIATV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.79473876953125	2	494.792924	987.571294	0.24752	0.00012247	3.5153	0.0017393	3.7628	0.0018618	494.7945761024775	59.473	1.1842	59.275	58.654	59.838	-0.19742					66	29	4	0	0	0	0.03201	3	6581	6561;6569;6581		139.97	21.847	1	7735000			47347	9617	32871	32923	52698;52699;52700	52700					0.07701145334556259
LRSTQIATV	9	Unmodified	_LRSTQIATV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7948913574219	2	494.792924	987.571294	0.53317	0.00026381	2.3619	0.0011687	2.8951	0.0014325	494.7943804767347	59.354	1.1895	59.173	58.546	59.736	-0.18134					75	29	4	0	0	0	0.03201	3	6551	6551;6562;6589		139.97	12.509	1	7594200			47348	9617	32871	32923	52701;52702;52703	52701					0.07701145334556259
LRSTQIATV	9	Unmodified	_LRSTQIATV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7949523925781	2	494.792924	987.571294	0.3037	0.00015027	2.4589	0.0012167	2.7626	0.0013669	494.7945194552338	59.475	1.258	59.226	58.615	59.873	-0.24842					90	31	5	0	0	0	0.077175	3	6582	6549;6557;6582		118.74	27.966	1	7793700			47349	9617	32871	32923	52704;52705;52706	52706					0.07701145334556259
LRSTQIATV	9	Unmodified	_LRSTQIATV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.792924	987.571294	1.1721	0.00057997	5.3154	0.00263	6.4876	0.00321	494.79412278229745	59.112	0.922	59.112	58.823	59.745	0	-0.062385	0.0017667	NaN	139.97	79	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3026700			47350	9617	32871	32923							0.07701145334556259
LRSTQIATV	9	Unmodified	_LRSTQIATV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.792924	987.571294	1.4475	0.00071619	5.0719	0.0025095	6.5193	0.0032257	494.7940219846863	59.366	1.0485	59.166	58.853	59.901	-0.20016	-0.008698	0.0015257	NaN	139.97	85	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3763300			47351	9617	32871	32923							0.07701145334556259
LRSTQIATV	9	Unmodified	_LRSTQIATV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.792924	987.571294	0.36934	0.00018275	6.1208	0.0030285	6.4902	0.0032113	494.79452552891945	59.01	1.0933	59.096	58.776	59.869	0.085686	-0.079199	0.0025637	NaN	139.97	85	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3117700			47352	9617	32871	32923							0.07701145334556259
LRSVSLRPL	9	Unmodified	_LRSVSLRPL_					0	0	0			REV__nc|ENSG00000198685|O15544|LINC01565	REV__nc|ENSG00000198685|O15544|LINC01565	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2448120117188	2	520.832383	1039.65021	-0.067461	-3.5136E-05	-4.1372	-0.0021548	-4.2047	-0.0021899	520.8303744257892	50.295	0.45955	50.376	50.117	50.576	0.080994					20	13	2	0	0	0	0.024381	1	5226	5226		55.504	27.622	1	227100	+		47353	37068	32872	32924	52707	52707					0.13197417359515384
LRTAYIHAY	9	Unmodified	_LRTAYIHAY_					0	0	0			REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.2569580078125	2	554.300916	1106.58728	-0.25114	-0.00013921	-1.9006	-0.0010535	-2.1518	-0.0011927	554.2980416181151	45.29	0.22543	45.037	44.865	45.091	-0.25252					8	5	2	0	0	0	0.024487	1	4261	4261		31.955	8.9124	1	106130	+		47354	33163	32873	32925	52708	52708					0.03824851571448562
LRTCAPLAV	9	Unmodified	_LRTCAPLAV_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2717590332031	2	472.273312	942.532072	-0.95259	-0.00044988	-2.8282	-0.0013357	-3.7807	-0.0017855	472.27189120599166	65.046	0.8222	64.783	64.417	65.239	-0.2626					52	21	4	0	0	0	0.62163	1	7641	7641		51.335	0.14276	1	4554200			47355	5868	32874	32926	52709	52709					0.05850721779336254
LRTDTEDEHS	10	Unmodified	_LRTDTEDEHS_					0	0	0		ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20763469-20774096:-|nuORF	ENSG00000136319|ENST00000258821|TTC5	ENSG00000136319|ENST00000258821|TTC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.5149230957031	3	401.514313	1201.52111	0.53888	0.00021637	0.20605	8.2734E-05	0.74494	0.0002991	401.5143494511862	24.492	0.67792	24.277	23.999	24.677	-0.2151					38	15	3	0	0	0	1.1333	1	1086	1086		28.081	1.0342	1	2544600			47356	5009	32875	32927	52710	52710					-0.07159053851910357
LRTFSCCY	8	Unmodified	_LRTFSCCY_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97;ENST00000533108.1_1_8:145164641-145165891:+|nuORF	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7181091308594	2	496.720055	991.425558	-0.47489	-0.00023589	-4.2701	-0.0021211	-4.745	-0.0023569	496.71803404020903	28.102	1.3901	28.097	27.616	29.006	-0.0042019					91	33	5	0	0	0	0.91239	2	1591	1591;1603		50.025	2.1089	1	4828600			47357	8915	32876	32928	52711;52712	52711					-0.07049776777489569
LRTFSCCY	8	Unmodified	_LRTFSCCY_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97;ENST00000533108.1_1_8:145164641-145165891:+|nuORF	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.7179870605469	2	496.720055	991.425558	-0.46865	-0.00023279	-4.0567	-0.002015	-4.5253	-0.0022478	496.71801296703865	27.746	1.2646	27.827	27.392	28.657	0.081291					79	31	5	0	0	0	0.78609	2	1499	1499;1512		60.294	12.378	1	4591900			47358	8915	32876	32928	52713;52714	52713					-0.07049776777489569
LRTFVLPV	8	Unmodified	_LRTFVLPV_					0	0	0		ENSG00000076662|ENST00000160262|ICAM3	ENSG00000076662|ENST00000160262|ICAM3	ENSG00000076662|ENST00000160262|ICAM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.8003845214844	2	472.80002	943.585488	1.0765	0.00050898	-0.80272	-0.00037953	0.27379	0.00012945	472.799509326366	77.911	1.5715	77.7	77.418	78.99	-0.21087					100	37	4	0	0	0	0.68535	1	9606	9606		68.485	2.6815	1	2904600			47359	1588	32877	32929	52715	52715					0.1114384255351979
LRTGGIRK	8	Unmodified	_LRTGGIRK_					0	0	0		HMGCL|p.P267Gfs*55|1|0.28|ENSG00000117305|chr1:23804477-23804478|-/ACAGCCTCCAAGTCCTGCC|frameshift_variant	HMGCL|p.P267Gfs*55|1|0.28|ENSG00000117305|chr1:23804477-23804478|-/ACAGCCTCCAAGTCCTGCC|frameshift_variant	HMGCL|p.P267Gfs*55|1|0.28|ENSG00000117305|chr1:23804477-23804478|-/ACAGCCTCCAAGTCCTGCC|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	450.78961181640625	2	450.790518	899.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.106	1	19.882	19.382	20.382	-0.22344								0	0	0	0.5271	1	479	479		53.351	2.016	1				47360	17741	32878	32930	52716	52716					0.11268305982457605
LRTGQLPE	8	Unmodified	_LRTGQLPE_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1;ENST00000490523.1_1_7:6064306-6068335:-|nuORF	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2586975097656	2	457.258717	912.50288	0.37752	0.00017262	-0.52101	-0.00023824	-0.1435	-6.5615E-05	457.25830267896174	61.175	1.648	61.246	60.272	61.92	0.071125					133	43	5	0	0	0	0.23402	1	6982	6982		134.81	32.037	1	6946300			47361	1814	32879	32931	52717	52717					0.043129007547122455
LRTHPVILI	9	Unmodified	_LRTHPVILI_					0	0	0		ENST00000520094.1_1_8:125568609-125570205:-|nuORF	ENST00000520094.1_1_8:125568609-125570205:-|nuORF	ENST00000520094.1_1_8:125568609-125570205:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3082275390625	2	531.345126	1060.6757	1.1592	0.00061592	1.41	0.00074917	2.5691	0.0013651	531.3458722071708	59.043	0.28518	58.856	58.721	59.007	-0.18705					10	7	2	0	0	0	0.024427	1	6688	6688		42.396	7.1954	1	163540			47362	15971	32880	32932	52718	52718					0.14778891881951495
LRTHPVLQN	9	Unmodified	_LRTHPVLQN_					0	0	0		ENST00000470145.2_1_20:31016136-31017171:+|nuORF	ENST00000470145.2_1_20:31016136-31017171:+|nuORF	ENST00000470145.2_1_20:31016136-31017171:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.296142578125	2	539.311815	1076.60908	-1.3983	-0.00075414	2.4068	0.001298	1.0084	0.00054385	539.3131620586669	58.342	0.20914	58.155	58.066	58.275	-0.18705					8	5	2	0	0	0	0.024374	1	6569	6569		49.442	13.823	1	159960			47363	14926	32881	32933	52719	52719					0.07383656320052978
LRTIALEFV	9	Unmodified	_LRTIALEFV_					0	0	0			REV__ENSG00000162669|ENST00000370425|HFM1	REV__ENSG00000162669|ENST00000370425|HFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.3189086914062	2	531.321317	1060.62808	-1.1987	-0.0006369	-2.8414	-0.0015097	-4.0401	-0.0021466	531.3196752837498	93.75	1.1088	93.61	93.223	94.331	-0.13995					100	25	5	0	0	0	0.77768	1	11528	11528		40.778	1.5253	1	3682600	+		47364	25473	32882	32934	52720	52720					0.1001919289108173
LRTIVVKI	8	Unmodified	_LRTIVVKI_					0	0	0			REV__chr17:8377692-8379915|135|148.36|0.0|23.82|-|0|RPL26,None|1	REV__chr17:8377692-8379915|135|148.36|0.0|23.82|-|0|RPL26,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7881774902344	2	471.328945	940.643337	0.25107	0.00011834	-1.8315	-0.00086323	-1.5804	-0.0007449	471.3278145309272	23.593	0.4799	23.67	23.476	23.956	0.076241					15	10	2	0	0	0	0.027866	1	898	898		19.36	7.1531	1	79962	+		47365	19391	32883	32935	52721	52721					0.17064104478936315
LRTKGVVT	8	Unmodified	_LRTKGVVT_					0	0	0			REV__ENST00000474706.6_1_16:2588623-2607764:+|nuORF	REV__ENST00000474706.6_1_16:2588623-2607764:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2796936035156	2	437.279452	872.544351	-0.028377	-1.2409E-05	0.13396	5.8579E-05	0.10558	4.617E-05	437.27940681848236	21.599	0.8219	21.409	21.078	21.9	-0.19072					46	16	4	0	0	0	0.89627	1	683	683		51.335	0	1	950110	+		47366	33275	32884	32936	52722	52722					0.10298081514042678
LRTKKQSN	8	Unmodified	_LRTKKQSN_					0	0	0			REV__ENST00000357606.7_1_12:56221676-56222300:-|nuORF	REV__ENST00000357606.7_1_12:56221676-56222300:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7909240722656	2	487.790715	973.566878	-0.9621	-0.0004693	0.73582	0.00035893	-0.22627	-0.00011037	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	1.0009	1	10339	10339		37.159	0.13063	1	1891000	+		47367	30834	32885	32937	52723	52723					0.07903680911658739
LRTKKQSN	8	Unmodified	_LRTKKQSN_					0	0	0			REV__ENST00000357606.7_1_12:56221676-56222300:-|nuORF	REV__ENST00000357606.7_1_12:56221676-56222300:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.79058837890625	2	487.790715	973.566878	0.33726	0.00016451	-0.60673	-0.00029596	-0.26947	-0.00013144	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0198	1	10008	10008		34.173	5.023	1	1999500	+		47368	30834	32885	32937	52724	52724					0.07903680911658739
LRTLLCKHQT	10	Unmodified	_LRTLLCKHQT_					0	0	0		ENST00000360264.7_1_7:101897560-101897884:+|nuORF	ENST00000360264.7_1_7:101897560-101897884:+|nuORF	ENST00000360264.7_1_7:101897560-101897884:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.88763427734375	3	404.900897	1211.68086	0.75084	0.00030401	-2.6638	-0.0010786	-1.913	-0.00077458	405.2343826118354	22.857	0.32495	22.661	22.521	22.846	-0.19603					15	6	3	0	0	0	0.03519	1	809	809		9.2118	0	1	27101			47369	12758	32886	32938	52725	52725					0.08348827682220872
LRTLQEKLD	9	Unmodified	_LRTLQEKLD_					0	0	0		ENSG00000163071|ENST00000295213|SPATA18;nc|ENSG00000163071|Q8TC71-2|SPATA18;SPATA18|p.T13S|1|0.14|ENSG00000163071|chr4:52051742-52051742|C/G|missense_variant	ENSG00000163071|ENST00000295213|SPATA18	ENSG00000163071|ENST00000295213|SPATA18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.32373046875	2	558.324588	1114.63462	1.0696	0.00059718	-0.94284	-0.00052641	0.12675	7.0768E-05	558.3240449933329	98.769	1.2313	98.645	98.241	99.472	-0.12414					51	30	3	0	0	0	0.67687	1	12250	12250		47.657	3.2801	1	217700			47370	7031	32887	32939	52726	52726					0.08189086051788763
LRTLQEKLD	9	Unmodified	_LRTLQEKLD_					0	0	0		ENSG00000163071|ENST00000295213|SPATA18;nc|ENSG00000163071|Q8TC71-2|SPATA18;SPATA18|p.T13S|1|0.14|ENSG00000163071|chr4:52051742-52051742|C/G|missense_variant	ENSG00000163071|ENST00000295213|SPATA18	ENSG00000163071|ENST00000295213|SPATA18	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.324588	1114.63462	0.19015	0.00010617	-0.29717	-0.00016592	-0.10702	-5.975E-05	558.3245357009287	98.652	1.134	98.652	98.358	99.492	0	-0.02219	0.00019151	NaN	47.657	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235960			47371	7031	32887	32939							0.08189086051788763
LRTLQEKLD	9	Unmodified	_LRTLQEKLD_					0	0	0		ENSG00000163071|ENST00000295213|SPATA18;nc|ENSG00000163071|Q8TC71-2|SPATA18;SPATA18|p.T13S|1|0.14|ENSG00000163071|chr4:52051742-52051742|C/G|missense_variant	ENSG00000163071|ENST00000295213|SPATA18	ENSG00000163071|ENST00000295213|SPATA18	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.324588	1114.63462	-0.035043	-1.9565E-05	0.037248	2.0797E-05	0.0022053	1.2313E-06	558.3247153539525	98.661	1.3036	98.672	98.356	99.66	0.010231	-0.0022506	0.00056494	NaN	47.657	47	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238980			47372	7031	32887	32939							0.08189086051788763
LRTLQEKLD	9	Unmodified	_LRTLQEKLD_					0	0	0		ENSG00000163071|ENST00000295213|SPATA18;nc|ENSG00000163071|Q8TC71-2|SPATA18;SPATA18|p.T13S|1|0.14|ENSG00000163071|chr4:52051742-52051742|C/G|missense_variant	ENSG00000163071|ENST00000295213|SPATA18	ENSG00000163071|ENST00000295213|SPATA18	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.324588	1114.63462	0.6525	0.00036431	-0.64847	-0.00036205	0.0040331	2.2518E-06	558.324362929455	98.736	1.5958	98.732	97.971	99.567	-0.0038834	0.057908	-0.00020076	NaN	47.657	48	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234390			47373	7031	32887	32939							0.08189086051788763
LRTMILTFRYK	11	Unmodified	_LRTMILTFRYK_					0	0	0		ENST00000513447.1_1_5:54566383-54570502:-|nuORF	ENST00000513447.1_1_5:54566383-54570502:-|nuORF	ENST00000513447.1_1_5:54566383-54570502:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.28289794921875	3	481.283118	1440.82753	0.24413	0.0001175	0.42633	0.00020518	0.67046	0.00032268	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0811	1	13017	13017		16.53	0	1	1053600			47374	15868	32888	32940	52727	52727					0.1247450484734145
LRTPRKQL	8	Unmodified	_LRTPRKQL_					0	0	0			REV__ENST00000482963.1_1_10:126305748-126305844:+|nuORF	REV__ENST00000482963.1_1_10:126305748-126305844:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3003845214844	2	506.324725	1010.6349	-0.61403	-0.0003109	1.762	0.00089213	1.1479	0.00058123	506.32536328520473	32.434	0.18206	32.446	32.376	32.558	0.011799					5	4	2	0	0	0	0.027866	1	2233	2233		90.37	18.992	1	36987	+		47375	33498	32889	32941	52728	52728					0.13000550562321678
LRTQLRERDVR	11	Unmodified	_LRTQLRERDVR_					0	0	0		ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENST00000589915.1_1_19:12874442-12874529:-|nuORF	ENSG00000095066|ENST00000397668|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2831726074219	3	481.283057	1440.82734	0.24413	0.0001175	0.55302	0.00026616	0.79715	0.00038365	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0746	1	12963	12963		18.332	0.49852	1	1053600			47376	2016	32890	32942	52729	52729					0.12456221171669313
LRTQLRERDVR	11	Unmodified	_LRTQLRERDVR_					0	0	0		ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENST00000589915.1_1_19:12874442-12874529:-|nuORF	ENSG00000095066|ENST00000397668|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.283447265625	3	481.283057	1440.82734	0.3888	0.00018713	0.55365	0.00026646	0.94245	0.00045359	481.28322550437986	101.41	2.0202	101.23	100.66	102.68	-0.17178					149	48	5	0	0	0	1.0699	1	12564	12564		19.627	1.7938	1	742900			47377	2016	32890	32942	52730	52730					0.12456221171669313
LRTQPRGEIPV	11	Unmodified	_LRTQPRGEIPV_					0	0	0		ENST00000237536.8_2_20:35412206-35412971:-|nuORF	ENST00000237536.8_2_20:35412206-35412971:-|nuORF	ENST00000237536.8_2_20:35412206-35412971:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3699340820312	2	633.369861	1264.72517	-0.36915	-0.00023381	-0.72408	-0.00045861	-1.0932	-0.00069242	633.3692856842331	93.247	1.3144	93.125	92.182	93.497	-0.12215					76	30	4	0	0	0	1.013	1	11458	11458		33.922	0	1	1726300			47378	11260	32891	32943	52731	52731					0.1033955510006308
LRTRKESPE	9	Unmodified	_LRTRKESPE_					0	0	0			REV__CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	REV__CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3116455078125	2	558.312012	1114.60947	-0.95498	-0.00053318	0.55046	0.00030733	-0.40452	-0.00022585	558.3122770398202	22.314	0.85343	22.388	22.078	22.931	0.073954					47	17	4	0	0	0	0.42604	1	745	745		64.207	4.089	1	1287800	+		47379	19277	32892	32944	52732	52732					0.05675031249234053
LRTSPGIHL	9	Unmodified	_LRTSPGIHL_					0	0	0			REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	REV__sp|Q8AZJ5|LF1_EBVB9UncharacterizedLF1proteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF1PE=3SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.297607421875	2	497.295633	992.576714	0.020258	1.0074E-05	4.2449	0.002111	4.2651	0.002121	497.29750224703514	70.405	1.0295	70.417	70.134	71.164	0.012421					50	26	3	0	0	0	0.4752	1	8436	8436		60.972	0.67798	1	893020	+		47380	37569	32893	32945	52733	52733					0.0801286891704649
LRTVAARPGQL	11	Unmodified	_LRTVAARPGQL_					0	0	0		ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENST00000509549.5_1_22:19341546-19435194:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	591.357421875	2	591.359296	1180.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.436	1	80.198	79.698	80.698	-0.23784								0	0	0	0.89915	1	9632	9632		53.089	6.6322	1				47381	15805	32894	32946	52734	52734					0.12091589791225488
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167724609375	2	545.316763	1088.61897	-0.6354	-0.0003465	0.4679	0.00025515	-0.1675	-9.1343E-05	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0909	1	11246	11246		33.922	2.3918	1	11705000	+		47382	27154	32895	32947	52735	52735					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3168334960938	2	545.316763	1088.61897	-0.40471	-0.0002207	0.11379	6.2053E-05	-0.29092	-0.00015864	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	1.0719	1	10884	10884		36.447	6.129	1	3438300	+		47383	27154	32895	32947	52736	52736					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165283203125	2	545.316763	1088.61897	-0.30487	-0.00016625	0.011579	6.3145E-06	-0.29329	-0.00015994	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	1.0909	1	10859	10859		33.922	4.7516	1	3635800	+		47384	27154	32895	32947	52737	52737					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3162231445312	2	545.316763	1088.61897	-0.46982	-0.0002562	0.22064	0.00012032	-0.24919	-0.00013589	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0545	2	11158	11053;11158		38.754	1.3165	1	12792000	+		47385	27154	32895	32947	52738;52739	52739					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.317138671875	2	545.316763	1088.61897	-0.35128	-0.00019156	0.14645	7.9859E-05	-0.20484	-0.0001117	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.99657	1	10515	10515		46.457	7.2039	1	4936700	+		47386	27154	32895	32947	52740	52740					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3173217773438	2	545.316763	1088.61897	-0.95669	-0.0005217	0.92924	0.00050673	-0.027442	-1.4965E-05	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.99657	1	10790	10790		46.457	4.0606	1	15621000	+		47387	27154	32895	32947	52741	52741					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.316763	1088.61897	0.29621	0.00016153	-0.54145	-0.00029526	-0.24524	-0.00013373	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.0236	2	10642	10533;10642		42.864	7.2767	1	4888900	+		47388	27154	32895	32947	52742;52743	52743					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3164672851562	2	545.316763	1088.61897	-0.4393	-0.00023956	0.1164	6.3474E-05	-0.3229	-0.00017608	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0616	1	10460	10460		37.812	7.4938	1	5204600	+		47389	27154	32895	32947	52744	52744					0.07820799534761136
LRTVKSALSD	10	Unmodified	_LRTVKSALSD_					0	0	0			REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	REV__ENST00000479463.1_1_11:205819-207321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3170776367188	2	545.316763	1088.61897	-0.30292	-0.00016519	0.10816	5.8979E-05	-0.19476	-0.00010621	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.0344	1	11029	11029		41.427	6.2746	1	17068000	+		47390	27154	32895	32947	52745	52745					0.07820799534761136
LRVAQSNSL	9	Unmodified	_LRVAQSNSL_					0	0	0		ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3294372558594	2	494.282723	986.550893	-0.80561	-0.0003982	0.4083	0.00020181	-0.39732	-0.00019639	494.28288501951863	25.18	1.1089	24.953	24.122	25.231	-0.22683					39	25	3	0	0	0	0.024374	1	1062	1062		40.778	1.5253	1	568610			47391	11992	32896	32948	52746	52746					0.057079746747604077
LRVDLTST	8	Unmodified	_LRVDLTST_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.22900390625	2	452.758549	903.502546	0.13716	6.2099E-05	1.1771	0.00053293	1.3142	0.00059503	452.75895449851674	102.77	0.59341	102.77	102.54	103.14	0.0054245					32	14	3	0	0	0	0.027866	1	13139	13139		63.306	29.791	1	760880			47392	6406	32897	32949	52747	52747					0.04693481034848901
LRVDLTST	8	Unmodified	_LRVDLTST_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.22747802734375	2	452.758549	903.502546	0.36108	0.00016348	1.379	0.00062436	1.7401	0.00078785	452.7589696344163	102.85	0.5914	102.84	102.59	103.18	-0.0046005					38	14	4	0	0	0	0.027866	1	13103	13103		63.306	26.147	1	650600			47393	6406	32897	32949	52748	52748					0.04693481034848901
LRVDLTST	8	Unmodified	_LRVDLTST_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2282409667969	2	452.758549	903.502546	0.28745	0.00013015	0.95899	0.00043419	1.2464	0.00056434	452.75903317418624	103	0.57368	102.83	102.55	103.12	-0.17034					28	13	3	0	0	0	0.027866	1	12798	12798		53.351	22.848	1	1280200			47394	6406	32897	32949	52749	52749					0.04693481034848901
LRVEDRQDLNR	11	Unmodified	_LRVEDRQDLNR_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.309326171875	3	471.923418	1412.74842	3.9999	0.0018877	1.3517	0.00063791	5.3517	0.0025256	471.92377968697576	17.339	0.34717	17.339	17.201	17.548	0					8	6	2	0	0	0	0.024726	1	149	149		38.714	10.137	1	15281			47395	18462	32898	32950	52750	52750					0.05855949146757666
LRVFRGPR	8	Unmodified	_LRVFRGPR_					0	0	0			REV__ENSG00000183134|ENST00000332539|PTGDR2	REV__ENSG00000183134|ENST00000332539|PTGDR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2079162597656	2	500.811785	999.609017	-0.039276	-1.967E-05	-2.648	-0.0013261	-2.6872	-0.0013458	500.810684431921	42.785	0.80122	42.672	42.126	42.927	-0.11253					43	20	4	0	0	0	0.027866	1	3896	3896		35.201	2.3883	1	191190	+		47396	27543	32899	32951	52751	52751					0.10919701110697133
LRVLGGTSP	9	Unmodified	_LRVLGGTSP_					0	0	0		KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;ENST00000579241.1_1_17:73486365-73488110:+|nuORF;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;nc|ENSG00000177728|Q12767-2|TMEM94	KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2689208984375	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.62163	1	3138	3138		51.335	3.4199	1	141320000			47397	8767	32900	32952	52752	52752					0.07029491134380805
LRVLVQMCKM	10	Oxidation (M)	_LRVLVQMCKM(Oxidation (M))_		LRVLVQM(0.002)CKM(0.998)		LRVLVQM(-26)CKM(26)	0	0	1		nc|ENSG00000092929|Q70J99-3|UNC13D;ENSG00000092929|ENST00000207549|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF	nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.8909606933594	3	412.892357	1235.65524	-0.72305	-0.00029854	-2.9041	-0.0011991	-3.6272	-0.0014976	412.89106900173766	21.076	1.4263	20.863	19.936	21.363	-0.2128					83	28	4	0	0	0	0.99657	1	617	617		46.457	10.139	2	275000			47398	1999	32901	32953	52753	52753		72			0.046838938439350386
LRVPAGKQ	8	Unmodified	_LRVPAGKQ_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2187805175781	2	434.771794	867.529036	-0.73562	-0.00031983	1.7257	0.00075028	0.99006	0.00043045	434.7720562063098	29.907	0.66094	29.986	29.763	30.424	0.078344					27	15	4	0	0	0	0.027866	1	1854	1854		31.955	8.9124	1	208590	+		47399	23169	32902	32954	52754	52754					0.08997214716839608
LRVPLGRSL	9	Unmodified	_LRVPLGRSL_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.78961181640625	2	505.827101	1009.63965	-1.0475	-0.00052986	0.3703	0.00018731	-0.67721	-0.00034255	505.8271604166711	46.507	0.64085	46.354	46.135	46.776	-0.15279					43	17	4	0	0	0	0.024319	1	4646	4646		47.657	0	1	551630			47400	9198	32903	32955	52755	52755					0.13521434705091906
LRVPLTQAPG	10	Unmodified	_LRVPLTQAPG_					0	0	0		ENST00000565054.5_1_16:81772902-81819632:+|nuORF	ENST00000565054.5_1_16:81772902-81819632:+|nuORF	ENST00000565054.5_1_16:81772902-81819632:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.311767578125	2	526.316566	1050.61858	0.10442	5.4958E-05	-0.59325	-0.00031224	-0.48883	-0.00025728	526.3161026904139	37.144	0.34338	37.176	36.996	37.339	0.032269					12	8	2	0	0	0	0.03519	1	2928	2928		36.447	0.82846	1	67738			47401	16911	32904	32956	52756	52756					0.09529424605557324
LRVRLGDV	8	Unmodified	_LRVRLGDV_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7751770019531	2	464.290351	926.566149	-0.25312	-0.00011752	1.1598	0.00053848	0.90666	0.00042095	464.28853247972705	47.181	0.1778	47.181	47.111	47.289	0					6	4	2	0	0	0	0.027866	1	4719	4719		38.806	8.3025	1	26274			47402	7391	32905	32957	52757	52757					0.09992886262602951
LRVRVEVH	8	Unmodified	_LRVRVEVH_					0	0	0		ENST00000518820.1_1_8:143599542-143620974:+|nuORF	ENST00000518820.1_1_8:143599542-143620974:+|nuORF	ENST00000518820.1_1_8:143599542-143620974:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2964782714844	2	504.309075	1006.6036	3.4428	0.0017362	-1.8575	-0.00093675	1.5853	0.00079949	504.30814089815755	18.871	0.34429	18.934	18.796	19.14	0.063307					8	6	2	0	0	0	0.027866	1	298	298		31.955	3.7006	1	21298			47403	15936	32906	32958	52758	52758					0.10055977528224957
LRVSVSEYL	9	Unmodified	_LRVSVSEYL_					0	0	0		ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENST00000560516.1_1_15:50866997-50867273:-|nuORF	ENST00000560516.1_1_15:50866997-50867273:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2987060546875	2	533.300581	1064.58661	-1.3211	-0.00070455	0.9483	0.00050573	-0.37281	-0.00019882	533.3009644696813	61.149	0.81977	60.972	60.635	61.455	-0.1761					48	19	4	0	0	0	0.59099	1	6836	6836		53.351	8.8204	1	1550300			47404	16803	32907	32959	52759	52759					0.05690012131753974
LRVSYMEIY	9	Unmodified	_LRVSYMEIY_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MSMS	OPSCC_40_ClassI_Rep-2	5	587.2774047851562	2	587.302267	1172.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.037	1	73.772	73.272	74.272	-0.26479								0	0	0	0.68716	1	8731	8731		23.042	3.0457	1				47405	5284	32908	32960	52760	52760					0.0105893891411597
LRVTESVL	8	Unmodified	_LRVTESVL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.7638854980469	2	458.776742	915.538931	0.2998	0.00013754	3.8574	0.0017697	4.1572	0.0019072	458.7790636386766	23.539	0.37191	23.338	23.195	23.567	-0.20193					12	8	2	0	0	0	0.027866	1	941	941		94.006	0	1	42913			47406	8462	32909	32961	52761	52761					0.07778357931567825
LRWAFVTGT	9	Unmodified	_LRWAFVTGT_					0	0	0			REV__ENST00000475170.5_1_21:46305999-46306131:-|nuORF	REV__ENST00000475170.5_1_21:46305999-46306131:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2526245117188	2	525.790184	1049.56581	-0.64984	-0.00034168	-3.2365	-0.0017017	-3.8863	-0.0020434	526.2899773524861	46.266	0.22717	46.063	45.892	46.119	-0.20226					6	5	2	0	0	0	0.024539	1	4422	4422		20.947	0	1	60558	+		47407	33287	32910	32962	52762	52762					0.04301466542779053
LRWELMQDSI	10	Unmodified	_LRWELMQDSI_					0	0	0			REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	MSMS	OPSCC_39_ClassI_Rep-3	3	430.8860168457031	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.946	1	22.017	21.517	22.517	0.071487								0	0	0	0.749	1	682	682		42.338	7.1861	1		+		47408	28510	32911	32963	52763	52763					0.010571113458354375
LRWETNIK	8	Unmodified	_LRWETNIK_					0	0	0		nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7852783203125	2	530.300916	1058.58728	-0.9472	-0.0005023	2.2234	0.0011791	1.2762	0.00067678	530.3009281047179	53.048	0.43775	53.048	52.864	53.302	0					16	11	3	0	0	0	0.027866	1	5703	5703		73.975	0	1	141020			47409	10810	32912	32964	52764	52764					0.06032851571444553
LRWGEPEP	8	Unmodified	_LRWGEPEP_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.27301025390625	2	492.250892	982.48723	-0.7297	-0.00035919	-2.2523	-0.0011087	-2.982	-0.0014679	492.24990046903395	23.709	0.29952	23.648	23.428	23.727	-0.06086					9	6	2	0	0	0	0.027866	1	937	937		63.306	9.9548	1	29643			47410	1254	32913	32965	52765	52765					-0.004713857623414697
LRWLVIGW	8	Unmodified	_LRWLVIGW_					0	0	0		ENST00000474280.1_1_13:26795410-26796139:-|nuORF	ENST00000474280.1_1_13:26795410-26796139:-|nuORF	ENST00000474280.1_1_13:26795410-26796139:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7926025390625	2	521.813462	1041.61237	-0.39496	-0.0002061	-1.0431	-0.00054428	-1.438	-0.00075038	521.8127940377816	44.821	0.96109	44.858	44.375	45.337	0.036903					45	27	2	0	0	0	0.027866	1	4296	4296		62.978	0	1	613420			47411	15027	32914	32966	52766	52766					0.09322951164699589
LRWNHCSLS	9	Unmodified	_LRWNHCSLS_					0	0	0		ENST00000439875.1_1_9:115871990-115872302:-|nuORF	ENST00000439875.1_1_9:115871990-115872302:-|nuORF	ENST00000439875.1_1_9:115871990-115872302:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.3419189453125	2	558.274375	1114.5342	-0.12194	-6.8077E-05	4.2552	0.0023756	4.1333	0.0023075	558.2767073310265	67.212	1.3499	67.212	66.714	68.064	0					73	33	3	0	0	0	0.023635	1	7960	7960		47.657	0	1	439270			47412	14341	32915	32967	52767	52767					-0.018488494828261537
LRYDEYGD	8	Unmodified	_LRYDEYGD_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18;ENST00000507405.5_1_5:138755893-138773164:-|nuORF	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8326416015625	2	515.727446	1029.44034	3.4121	0.0017597	-3.0307	-0.001563	0.38145	0.00019672	515.7256948937066	18.241	0.29983	17.999	17.875	18.175	-0.24256					8	5	2	0	0	0	0.027866	1	244	244		19.36	9.0947	1	24049			47413	8043	32916	32968	52768	52768					-0.07320290104144078
LRYLVPSL	8	Unmodified	_LRYLVPSL_					0	0	0			REV__ENSG00000143061|ENST00000369486|IGSF3	REV__ENSG00000143061|ENST00000369486|IGSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2884216308594	2	480.797478	959.580402	1.032	0.0004962	-1.1777	-0.00056622	-0.14563	-7.002E-05	480.796819625099	65.733	0.15558	65.733	65.605	65.76	0					5	3	2	0	0	0	0.027866	1	7805	7805		37.159	0	1	96283	+		47414	24194	32917	32969	52769	52769					0.09899538690888221
LRYLVVAL	8	Unmodified	_LRYLVVAL_					0	0	0		nc|ENSG00000154721|P57087-2|JAM2;ENSG00000154721|ENST00000480456|JAM2;nc|ENSG00000154721|P57087-3|JAM2	nc|ENSG00000154721|P57087-2|JAM2	nc|ENSG00000154721|P57087-2|JAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7784729003906	2	473.807845	945.601138	-0.20339	-9.6368E-05	3.8561	0.0018271	3.6527	0.0017307	473.8095635277765	23.109	0.24648	23.185	23.026	23.272	0.076239					7	5	2	0	0	0	0.027866	1	820	820		52.299	20.344	1	21508			47415	6429	32918	32970	52770	52770					0.12616129070545412
LRYNITHPMV	10	Unmodified	_LRYNITHPMV_					0	0	0		ENSG00000196865|ENST00000369301|NHLRC2;NHLRC2|p.V250Sfs*35|1|0.22|ENSG00000196865|chr10:113876936-113876936|G/-|frameshift_variant;NHLRC2|p.G463Vfs*6|1|0.24|ENSG00000196865|chr10:113902486-113902486|G/-|frameshift_variant	ENSG00000196865|ENST00000369301|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3358764648438	2	622.334433	1242.65431	0.2866	0.00017836	3.0625	0.0019059	3.3491	0.0020843	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.1129	1	13581	13581		17.365	3.9109	1	1619900			47416	9929	32919	32971	52771	52771					0.04269138790891702
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.28839111328125	2	510.288963	1018.56337	-0.51361	-0.00026209	0.8595	0.00043859	0.34589	0.0001765	510.2891481472951	64.979	0.76184	64.744	64.452	65.214	-0.2345					33	18	3	0	0	0	0.55828	1	7402	7402		55.504	0.73953	1	1424500			47417	4404	32920	32972	52772	52772					0.05483294813438988
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2879943847656	2	510.288963	1018.56337	-1.0498	-0.00053569	1.379	0.00070368	0.3292	0.00016799	510.28939551030777	64.959	0.68512	64.756	64.461	65.146	-0.20253					32	16	3	0	0	0	0.20304	2	7417	7406;7417		88.643	25.337	1	1463200			47418	4404	32920	32972	52773;52774	52774					0.05483294813438988
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2880554199219	2	510.288963	1018.56337	-0.60454	-0.00030849	0.94034	0.00047984	0.3358	0.00017135	510.28905337767844	64.963	0.55679	64.708	64.465	65.022	-0.25563					32	13	3	0	0	0	0.40179	1	7405	7405		65.803	10.909	1	1411100			47419	4404	32920	32972	52775	52775					0.05483294813438988
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.288963	1018.56337	-0.86886	-0.00044337	2.2534	0.0011499	1.3845	0.00070651	510.2898928006043	64.669	0.52303	64.669	64.46	64.983	0	-0.063798	0.00067011	NaN	88.643	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955690			47420	4404	32920	32972							0.05483294813438988
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.288963	1018.56337	-1.4543	-0.00074209	3.1869	0.0016262	1.7326	0.00088415	510.29019884000115	65.015	0.64254	64.753	64.494	65.136	-0.2626	0.019532	0.0016228	NaN	88.643	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802000			47421	4404	32920	32972							0.05483294813438988
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.288963	1018.56337	-0.74729	-0.00038134	2.8413	0.0014499	2.094	0.0010686	510.2897834632736	64.723	0.56654	64.769	64.486	65.053	0.045502	0.035373	0.0012702	NaN	88.643	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987510			47422	4404	32920	32972							0.05483294813438988
LRYQPPLLL	9	Unmodified	_LRYQPPLLL_					0	0	0			REV__ENST00000252622.14_1_19:2321556-2321658:-|nuORF	REV__ENST00000252622.14_1_19:2321556-2321658:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.3237915039062	2	556.844959	1111.67537	-0.67533	-0.00037605	0.010299	5.7351E-06	-0.66503	-0.00037032	556.8448738294811	76.023	0.41646	75.778	75.688	76.104	-0.24455					15	10	2	0	0	0	0.024262	1	9349	9349		47.916	5.5195	1	134670	+		47423	29511	32921	32973	52776	52776					0.12399472162087477
LRYQPPLLL	9	Unmodified	_LRYQPPLLL_					0	0	0			REV__ENST00000252622.14_1_19:2321556-2321658:-|nuORF	REV__ENST00000252622.14_1_19:2321556-2321658:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	556.844959	1111.67537	0.51032	0.00028417	-0.7787	-0.00043362	-0.26838	-0.00014944	556.8442788292398	75.953	0.53291	75.965	75.752	76.285	0.011635	0.092281	-0.00073048	NaN	47.916	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95513	+		47424	29511	32921	32973							0.12399472162087477
LSAAFSPHAF	10	Unmodified	_LSAAFSPHAF_					0	0	0			REV__ENSG00000164488|ENST00000366795|DACT2	REV__ENSG00000164488|ENST00000366795|DACT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2667846679688	2	524.266542	1046.51853	2.8325	0.001485	-3.4604	-0.0018142	-0.6279	-0.00032919	524.2645308269991	16.879	0.44917	16.879	16.752	17.201	0					25	11	3	0	0	0	1.0142	1	98	98		44.117	5.3107	1	170480	+		47425	25761	32922	32974	52777	52777					-0.0028681272824542248
LSACNLQGFP	10	Unmodified	_LSACNLQGFP_					0	0	0		ENST00000495962.1_1_7:116381027-116395422:+|nuORF	ENST00000495962.1_1_7:116381027-116395422:+|nuORF	ENST00000495962.1_1_7:116381027-116395422:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2576293945312	2	525.257859	1048.50117	-0.72492	-0.00038077	0.90237	0.00047397	0.17745	9.3205E-05	525.258155246414	63.253	1.1237	63.253	62.938	64.062	0					81	30	4	0	0	0	0.19121	1	7405	7405		122.18	31.575	1	5653900			47426	15556	32923	32975	52778	52778					-0.021144763255506405
LSADPSIN	8	Unmodified	_LSADPSIN_					0	0	0			REV__ENST00000488258.5_1_7:151265789-151372578:-|nuORF	REV__ENST00000488258.5_1_7:151265789-151372578:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.73748779296875	2	408.708525	815.402498	0.12916	5.2787E-05	1.756	0.00071771	1.8852	0.00077049	408.70927550820613	37.766	0.33789	37.587	37.363	37.701	-0.17929					14	8	2	0	0	0	0.027866	1	3062	3062		23.042	15.352	1	84043	+		47427	33638	32924	32976	52779	52779					-0.012587562989438084
LSADRQAS	8	Unmodified	_LSADRQAS_					0	0	0			REV__nc|ENSG00000089356|Q14802-3|FXYD3	REV__nc|ENSG00000089356|Q14802-3|FXYD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.218505859375	2	424.217049	846.419545	0.15091	6.4021E-05	3.3998	0.0014423	3.5507	0.0015063	424.2184034867315	98.49	2.0564	98.5	97.728	99.785	0.010239					126	47	5	0	0	0	1.0198	1	12504	12504		34.173	2.2177	1	7266600	+		47428	36500	32925	32977	52780	52780					-0.009808356931443996
LSAEALTIQ	9	Unmodified	_LSAEALTIQ_					0	0	0		ENST00000416764.5_1_3:185686359-185693154:+|nuORF;ENST00000306399.3_1_3:185686359-185697623:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	ENST00000416764.5_1_3:185686359-185693154:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7450256347656	2	473.266207	944.517862	0.38256	0.00018105	-0.14787	-6.998E-05	0.2347	0.00011107	473.26578414394146	48.735	0.52092	48.735	48.585	49.106	0					31	14	3	0	0	0	0.023239	1	5020	5020		84.916	2.675	1	1162500			47429	12001	32926	32978	52781	52781					0.04338347832049294
LSAFLKQKKT	10	Unmodified	_LSAFLKQKKT_					0	0	0		ENSG00000164743|ENST00000297324|C8orf48	ENSG00000164743|ENST00000297324|C8orf48	ENSG00000164743|ENST00000297324|C8orf48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	583.2899780273438	2	582.360973	1162.70739	-0.29326	-0.00017078	-0.025634	-1.4928E-05	-0.31889	-0.00018571	582.3608786325573	71.731	0.877	71.443	70.998	71.875	-0.28858					60	22	4	0	0	0	0.03519	1	8666	8666		17.468	1.4612	1	1177000			47430	7315	32927	32979	52782	52782					0.13254839845217248
LSAGRLSVL	9	Unmodified	_LSAGRLSVL_					0	0	0			REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.28485107421875	2	458.284734	914.554916	0.99375	0.00045542	-0.88116	-0.00040382	0.11259	5.1597E-05	458.28421345022673	58.911	0.91491	58.911	58.606	59.52	0					68	24	4	0	0	0	0.12602	1	6689	6689		104.75	3.1458	1	5782000	+		47431	33631	32928	32980	52783	52783					0.09422064168461475
LSAGRLSVL	9	Unmodified	_LSAGRLSVL_					0	0	0			REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2851257324219	2	458.284734	914.554916	0.77934	0.00035716	-0.59285	-0.00027169	0.1865	8.5468E-05	458.2843559382004	58.779	1.1363	58.87	58.333	59.469	0.091217					76	30	4	0	0	0	0.31037	1	6588	6588		74.255	0.28031	1	5457700	+		47432	33631	32928	32980	52784	52784					0.09422064168461475
LSAGRLSVL	9	Unmodified	_LSAGRLSVL_					0	0	0			REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	458.284734	914.554916	0.99375	0.00045542	-0.88116	-0.00040382	0.11259	5.1597E-05	458.28421345022673	58.911	0.91491	58.911	58.606	59.52	0	0.022942	0.00014102	NaN	104.75	68	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5782000	+		47433	33631	32928	32980							0.09422064168461475
LSAGVAITVS	10	Unmodified	_LSAGVAITVS_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X;REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.267578125	2	459.26875	916.522947	-1.0678	-0.00049041	1.5138	0.00069526	0.44603	0.00020485	459.26938495698965	48.439	0.8037	48.163	47.738	48.542	-0.27598					55	21	4	0	0	0	1.0508	1	4803	4803		39.253	0.49923	1	4858700	+		47434	24522;28166	32929	32981	52785	52785					0.06134651694662807
LSAHGVAR	8	Unmodified	_LSAHGVAR_					0	0	0			REV__ENST00000441363.1_1_6:74009094-74009619:+|nuORF	REV__ENST00000441363.1_1_6:74009094-74009619:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.7451171875	2	405.732669	809.450785	0.81277	0.00032977	-2.3679	-0.00096072	-1.5551	-0.00063095	405.7319964447369	45.361	0.40384	45.361	45.31	45.714	0					23	11	3	0	0	0	0.027866	1	4423	4423		16.473	0	1	492160	+		47435	32542	32930	32982	52786	52786					0.03843782131605167
LSAHRALPL	9	Unmodified	_LSAHRALPL_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7702941894531	2	489.298176	976.581799	-0.58206	-0.0002848	1.4171	0.00069341	0.83508	0.0004086	489.2988067997542	29.031	0.56305	29.034	28.713	29.276	0.0031357					30	13	3	0	0	0	0.024412	1	1707	1707		24.203	6.8378	1	419640	+		47436	23100	32931	32983	52787	52787					0.09257172779666689
LSAHVVLK	8	Unmodified	_LSAHVVLK_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.2380065917969	2	433.776545	865.538538	-0.10821	-4.6941E-05	0.32956	0.00014295	0.22135	9.6014E-05	433.7765933237413	34.31	0.73522	34.31	34.05	34.785	0					35	18	3	0	0	0	0.027866	1	2579	2579		33.516	6.7195	1	354710			47437	7888	32932	32984	52788	52788					0.10038983002380064
LSAIALIYLFR	11	Unmodified	_LSAIALIYLFR_					0	0	0		ENST00000378078.4_1_9:35752961-35753141:+|nuORF	ENST00000378078.4_1_9:35752961-35753141:+|nuORF	ENST00000378078.4_1_9:35752961-35753141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.26507568359375	3	427.263941	1278.76999	0.1987	8.4896E-05	0.89059	0.00038052	1.0893	0.00046541	427.26444300600974	54.063	2.6284	53.818	53.421	56.049	-0.2453					263	76	6	0	0	0	1.0739	1	5775	5775		18.531	0.26896	1	50149000			47438	13225	32933	32985	52789	52789					0.14175985913379918
LSAKLWDV	8	Unmodified	_LSAKLWDV_					0	0	0		ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	ENSG00000119402|ENST00000608872|FBXW2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.2648010253906	2	466.26601	930.517468	0.13373	6.2356E-05	-0.035458	-1.6533E-05	0.098276	4.5823E-05	466.26584404419424	65.938	0.52119	65.665	65.43	65.951	-0.27283					46	13	4	0	0	0	0.25873	1	7801	7801		129.68	2.2209	1	2677800			47439	3734	32934	32986	52790	52790					0.04942972902847487
LSAKNRLI	8	Unmodified	_LSAKNRLI_					0	0	0		ENST00000361577.7_2_14:45473380-45475258:+|nuORF	ENST00000361577.7_2_14:45473380-45475258:+|nuORF	ENST00000361577.7_2_14:45473380-45475258:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7507629394531	2	457.792727	913.5709	-0.781	-0.00035754	0.79829	0.00036545	0.017292	7.9163E-06	457.7929534043975	29.877	0.49746	29.955	29.802	30.3	0.078344					17	11	2	0	0	0	0.027866	1	1846	1846		19.36	7.849	1	128390			47440	12801	32935	32987	52791	52791					0.11065770405377862
LSAKRFSD	8	Unmodified	_LSAKRFSD_					0	0	0			REV__ENST00000472718.5_1_3:47852173-47857481:+|nuORF	REV__ENST00000472718.5_1_3:47852173-47857481:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.27947998046875	2	462.250892	922.48723	0.64806	0.00029956	2.8422	0.0013138	3.4902	0.0016134	462.25043911634174	42.618	0.94957	42.644	42.056	43.005	0.026016					64	26	4	0	0	0	0.027866	1	3901	3901		49.442	11.63	1	1419900	+		47441	33216	32936	32988	52792	52792					0.02288614237670572
LSAKSTILY	9	Unmodified	_LSAKSTILY_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.255126953125	2	498.292225	994.569897	-0.43477	-0.00021664	-0.93161	-0.00046422	-1.3664	-0.00068086	498.29175727893585	62.187	0.46816	61.93	61.706	62.174	-0.25725					17	11	2	0	0	0	0.024021	1	6996	6996		68.787	8.4929	1	146450			47442	10412	32937	32989	52793	52793					0.0723951124582527
LSAKVVWAT	9	Unmodified	_LSAKVVWAT_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2863464355469	2	487.78711	973.559667	-0.35598	-0.00017364	3.4319	0.001674	3.0759	0.0015004	487.78863888945097	41.953	0.72538	41.721	41.43	42.155	-0.23186					39	19	4	0	0	0	0.023635	1	3737	3737		47.657	1.6851	1	2337100	+		47443	36725	32938	32990	52794	52794					0.0718294831123103
LSALFGIPMA	10	Unmodified	_LSALFGIPMA_					0	0	0		nc|ENSG00000105974|Q03135-2|CAV1;ENSG00000105974|ENST00000341049|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	nc|ENSG00000105974|Q03135-2|CAV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.282958984375	2	510.283346	1018.55214	-0.23334	-0.00011907	-1.3647	-0.0006964	-1.5981	-0.00081547	510.28266200220463	97.848	0.91312	97.683	96.991	97.904	-0.1652					37	20	2	0	0	0	1.0142	1	12121	12121		44.117	3.5442	1	283010			47444	2740	32939	32991	52795	52795					0.043604727192928294
LSALHHID	8	Unmodified	_LSALHHID_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C	REV__ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.77734375	2	453.245609	904.476666	0.53527	0.00024261	-0.37153	-0.0001684	0.16374	7.4216E-05	453.2453142911353	40.817	0.56628	40.817	40.623	41.189	0					26	15	2	0	0	0	0.027866	1	3675	3675		38.806	0	1	731610	+		47445	19891	32940	32992	52796	52796					0.020606315832424116
LSALHHID	8	Unmodified	_LSALHHID_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C	REV__ENSG00000009335|ENST00000348165|UBE3C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.245609	904.476666	-0.017219	-7.8044E-06	0.19109	8.6612E-05	0.17387	7.8808E-05	453.2455414753097	40.966	0.45924	40.989	40.83	41.29	0.023006	0.10568	0.0003834	NaN	38.806	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	709240	+		47446	19891	32940	32992							0.020606315832424116
LSALNSAFSL	10	Unmodified	_LSALNSAFSL_					0	0	0		ATP13A4|p.G102S|1|0.61|ENSG00000127249|chr3:193502570-193502570|C/T|missense_variant	ATP13A4|p.G102S|1|0.61|ENSG00000127249|chr3:193502570-193502570|C/T|missense_variant	ATP13A4|p.G102S|1|0.61|ENSG00000127249|chr3:193502570-193502570|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7799072265625	2	511.779482	1021.54441	-0.24176	-0.00012373	-1.0618	-0.00054343	-1.3036	-0.00066716	511.7791751010672	29.467	1.3471	29.317	28.912	30.259	-0.14952					92	31	6	0	0	0	0.64538	1	1810	1810		71.877	0.58177	1	8065000			47447	150	32941	32993	52797	52797					0.034500367233818
LSALREVI	8	Unmodified	_LSALREVI_					0	0	0			REV__ENST00000370214.8_1_1:94965144-94982653:+|nuORF	REV__ENST00000370214.8_1_1:94965144-94982653:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.7788391113281	2	450.779285	899.544017	-0.022145	-9.9825E-06	-0.34627	-0.00015609	-0.36842	-0.00016608	450.7790651591307	54.374	1.191	54.129	53.891	55.082	-0.2453					91	34	4	0	0	0	0.33369	1	5771	5771		106.42	3.6419	1	8413100	+		47448	31116	32942	32994	52798	52798					0.09022661794188025
LSALREVI	8	Unmodified	_LSALREVI_					0	0	0			REV__ENST00000370214.8_1_1:94965144-94982653:+|nuORF	REV__ENST00000370214.8_1_1:94965144-94982653:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7790222167969	2	450.779285	899.544017	0.33688	0.00015186	-0.67682	-0.0003051	-0.33994	-0.00015324	450.77889651447543	54.3	1.1991	54.103	53.889	55.088	-0.19739					74	32	3	0	0	0	0.42327	1	5779	5779		94.006	5.3636	1	7527100	+		47449	31116	32942	32994	52799	52799					0.09022661794188025
LSALSINTF	9	Unmodified	_LSALSINTF_					0	0	0			REV__ENST00000371241.5_1_10:97141455-97141509:-|nuORF	REV__ENST00000371241.5_1_10:97141455-97141509:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2691955566406	2	483.26875	964.522947	-0.38259	-0.00018489	-0.56055	-0.0002709	-0.94315	-0.00045579	483.2684886384797	46.482	1.6975	46.279	45.744	47.442	-0.20226					123	46	5	0	0	0	0.67687	1	4438	4438		47.657	1.2006	1	58660000	+		47450	31154	32943	32995	52800	52800					0.03926651694666816
LSALVKQPQ	9	Unmodified	_LSALVKQPQ_					0	0	0			REV__ENST00000327155.9_1_18:20513414-20516744:+|nuORF	REV__ENST00000327155.9_1_18:20513414-20516744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7696533203125	2	492.297842	982.581131	-0.1893	-9.3192E-05	-1.256	-0.00061832	-1.4453	-0.00071151	492.29689302712535	42.443	0.74079	42.469	42.12	42.861	0.026012					30	20	2	0	0	0	0.024294	1	3821	3821		45.952	15.448	1	481480	+		47451	30414	32944	32996	52801	52801					0.08914333339942004
LSALWKPLD	9	Unmodified	_LSALWKPLD_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7694702148438	2	521.800217	1041.58588	-0.54131	-0.00028246	-3.5395	-0.0018469	-4.0808	-0.0021294	521.7982586861814	52.534	0.48851	52.265	51.944	52.432	-0.26904					29	12	3	0	0	0	0.023274	1	5465	5465		87.696	18.85	1	1263200	+		47452	19695	32945	32997	52802	52802					0.0667521748271156
LSALWKPLD	9	Unmodified	_LSALWKPLD_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.800217	1041.58588	-0.707	-0.00036891	-3.0983	-0.0016167	-3.8053	-0.0019856	521.7984813874963	52.254	0.46416	52.254	52.049	52.513	0	0.02455	0.00028148	NaN	87.696	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074300	+		47453	19695	32945	32997							0.0667521748271156
LSALWKPLD	9	Unmodified	_LSALWKPLD_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.800217	1041.58588	0.01411	7.3625E-06	-3.5993	-0.0018781	-3.5852	-0.0018708	521.7980529627388	52.359	0.42619	52.212	52.021	52.447	-0.14735	-0.01748	-0.00024142	NaN	87.696	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963700	+		47454	19695	32945	32997							0.0667521748271156
LSALWKPLD	9	Unmodified	_LSALWKPLD_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.800217	1041.58588	-0.5722	-0.00029858	-3.2391	-0.0016901	-3.8113	-0.0019887	521.7983156310529	52.17	0.36371	52.262	52.04	52.404	0.091942	0.032376	0.00013454	NaN	87.696	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617260	+		47455	19695	32945	32997							0.0667521748271156
LSAMYHELP	9	Unmodified	_LSAMYHELP_					0	0	0			REV__ENST00000495607.5_1_22:50750570-50752368:-|nuORF	REV__ENST00000495607.5_1_22:50750570-50752368:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2930908203125	2	530.760235	1059.50592	-1.1551	-0.00061309	2.5681	0.001363	1.413	0.00074994	530.7623982797888	23.869	0.12839	23.822	23.741	23.869	-0.047146					4	2	2	0	0	0	0.024535	1	969	969		25.45	0	1	11095	+		47456	28682	32946	32998	52803	52803					-0.02145592182796463
LSANWNQP	8	Unmodified	_LSANWNQP_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2;MORC2|p.P479L|1|0.14|ENSG00000133422|chr22:30937645-30937645|G/A|missense_variant	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2377624511719	2	465.227417	928.44028	-1.3957	-0.00064931	-1.4127	-0.00065724	-2.8084	-0.0013065	465.2269650174112	30.238	0.12451	30.238	30.176	30.3	0					4	2	2	0	0	0	0.027866	1	1925	1925		37.159	3.6435	1	76825			47457	4706	32947	32999	52804	52804					-0.026802453134791904
LSAPDGPARE	10	Unmodified	_LSAPDGPARE_					0	0	0			REV__ENST00000367602.7_1_1:180168992-180169304:+|nuORF	REV__ENST00000367602.7_1_1:180168992-180169304:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3074951171875	2	506.756538	1011.49852	-0.31567	-0.00015997	1.6877	0.00085523	1.372	0.00069526	506.7567496322298	43.538	0.69984	43.426	43.109	43.809	-0.11253					49	18	4	0	0	0	0.03519	1	3988	3988		54.722	13.944	1	524230	+		47458	31026	32948	33000	52805	52805					-0.006766084588548438
LSAPFHSPL	9	Unmodified	_LSAPFHSPL_					0	0	0			REV__ENST00000361113.9_1_19:11729024-11729201:+|nuORF	REV__ENST00000361113.9_1_19:11729024-11729201:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.78509521484375	2	484.763635	967.512717	-0.082612	-4.0047E-05	-2.6413	-0.0012804	-2.7239	-0.0013204	484.7614838507465	24.584	0.27551	24.662	24.547	24.823	0.078344					8	5	2	0	0	0	0.024412	1	1050	1050		31.955	0	1	25071	+		47459	30932	32949	33001	52806	52806					0.027660887600859496
LSAPFHSPL	9	Unmodified	_LSAPFHSPL_					0	0	0			REV__ENST00000361113.9_1_19:11729024-11729201:+|nuORF	REV__ENST00000361113.9_1_19:11729024-11729201:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.763635	967.512717	-0.62974	-0.00030527	-3.5469	-0.0017194	-4.1766	-0.0020247	484.7620380701786	24.72	0.44553	24.72	24.474	24.919	0	-0.0021971	-0.0039015	NaN	24.203	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43248	+		47460	30932	32949	33001							0.027660887600859496
LSAPFHSPL	9	Unmodified	_LSAPFHSPL_					0	0	0			REV__ENST00000361113.9_1_19:11729024-11729201:+|nuORF	REV__ENST00000361113.9_1_19:11729024-11729201:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.763635	967.512717	-0.29215	-0.00014163	3.3189	0.0016089	3.0268	0.0014673	484.76549857032455	25.01	1.1494	24.784	24.122	25.271	-0.22683	0.061749	0.0027551	NaN	24.203	39	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57930	+		47461	30932	32949	33001							0.027660887600859496
LSAPINSVL	9	Unmodified	_LSAPINSVL_					0	0	0		nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.31292724609375	2	457.271293	912.528032	0.015452	7.0659E-06	-0.23573	-0.00010779	-0.22028	-0.00010073	457.27085926552957	44.675	0.65028	44.712	44.273	44.923	0.0369					31	18	2	0	0	0	0.021513	1	4211	4211		62.107	0	1	1745000			47462	1066	32950	33002	52807	52807					0.06826955557301062
LSAPINSVL	9	Unmodified	_LSAPINSVL_					0	0	0		nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.271293	912.528032	-0.77706	-0.00035533	0.70137	0.00032071	-0.07569	-3.4611E-05	457.27135225395847	44.739	0.51398	44.64	44.392	44.906	-0.099449	-0.020092	0.00033917	NaN	62.107	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238160			47463	1066	32950	33002							0.06826955557301062
LSAPINSVL	9	Unmodified	_LSAPINSVL_					0	0	0		nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.271293	912.528032	-0.65344	-0.0002988	0.29694	0.00013578	-0.35651	-0.00016302	457.27109448415393	44.881	0.47588	44.629	44.429	44.905	-0.25252	-0.030819	-3.0699E-05	NaN	62.107	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272590			47464	1066	32950	33002							0.06826955557301062
LSAPINSVL	9	Unmodified	_LSAPINSVL_					0	0	0		nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.271293	912.528032	-0.67356	-0.000308	-0.031467	-1.4389E-05	-0.70502	-0.00032239	457.27105720304246	44.846	0.68655	44.635	44.184	44.871	-0.21109	-0.024574	-0.00033104	NaN	62.107	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248600			47465	1066	32950	33002							0.06826955557301062
LSAPSFLGF	9	Unmodified	_LSAPSFLGF_					0	0	0		ENST00000556994.5_1_14:35452198-35465902:+|nuORF	ENST00000556994.5_1_14:35452198-35465902:+|nuORF	ENST00000556994.5_1_14:35452198-35465902:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.2889099121094	2	469.752736	937.490919	-0.7774	-0.00036519	-4.4209	-0.0020767	-5.1983	-0.0024419	469.75036317329204	48.721	0.25538	48.62	48.471	48.726	-0.1008					11	6	2	0	0	0	0.024386	1	4849	4849		33.516	0	1	89581			47466	16725	32951	33003	52808	52808					0.019672840115276813
LSAQEVLEN	9	Unmodified	_LSAQEVLEN_					0	0	0		ENST00000465727.5_1_1:1153052-1158671:-|nuORF;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;ENST00000478938.1_1_1:1152894-1154464:-|nuORF	ENST00000465727.5_1_1:1153052-1158671:-|nuORF	ENST00000465727.5_1_1:1153052-1158671:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7870788574219	2	501.758746	1001.50294	-1.9552	-0.00098102	2.2512	0.0011296	0.29605	0.00014855	501.7599265054512	60.403	0.21842	60.482	60.318	60.536	0.078888					8	5	2	0	0	0	0.024374	1	6842	6842		49.442	0	1	80012			47467	14792	32952	33004	52809	52809					0.0022485596406340846
LSAQIIKEPIN	11	Unmodified	_LSAQIIKEPIN_					0	0	0			REV__ENSG00000186583|ENST00000377470|SPATC1	REV__ENSG00000186583|ENST00000377470|SPATC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.510009765625	3	409.243206	1224.70779	0.20783	8.5054E-05	-1.4734	-0.00060298	-1.2656	-0.00051792	409.24254816826164	28.121	0.72605	28.121	27.804	28.53	0					36	17	3	0	0	0	0.02475	1	1656	1656		43.419	0	1	384310	+		47468	27869	32953	33005	52810	52810					0.1044221477445717
LSAQLRPL	8	Unmodified	_LSAQLRPL_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7589111328125	2	449.279452	896.544351	-0.64616	-0.0002903	0.40378	0.00018141	-0.24237	-0.00010889	449.27957950563865	45.037	1.1607	44.889	44.288	45.449	-0.1488					79	33	3	0	0	0	0.027866	1	4279	4279		27.882	0	1	3338200			47469	5789	32954	33006	52811	52811					0.09194081514044683
LSAQTLPLS	9	Unmodified	_LSAQTLPLS_					0	0	0		ENST00000459722.1_3_X:102841104-102841620:+|nuORF	ENST00000459722.1_3_X:102841104-102841620:+|nuORF	ENST00000459722.1_3_X:102841104-102841620:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2377624511719	2	465.26875	928.522947	-1.4168	-0.00065918	0.86956	0.00040458	-0.54721	-0.0002546	465.2693041736767	30.115	0.28321	30.115	30.017	30.3	0					10	6	2	0	0	0	0.024319	1	1925	1925		56.721	5.3856	1	62779			47470	14631	32955	33007	52812	52812					0.05582651694669494
LSARHLVTE	9	Unmodified	_LSARHLVTE_					0	0	0			REV__TRPA1|p.M312V|1|0.52|ENSG00000104321|chr8:72061635-72061635|T/C|missense_variant	REV__TRPA1|p.M312V|1|0.52|ENSG00000104321|chr8:72061635-72061635|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8246459960938	2	513.290548	1024.56654	-1.0356	-0.00053155	-1.1808	-0.00060609	-2.2164	-0.0011376	513.7910553348743	39.586	0.34764	39.487	39.269	39.616	-0.098751					15	9	2	0	0	0	0.024319	1	3417	3417		47.657	19.775	1	96635	+		47471	37733	32956	33008	52813	52813					0.05524261191817459
LSARILAPE	9	Unmodified	_LSARILAPE_					0	0	0		ENST00000595800.1_1_19:7711945-7712134:+|nuORF	ENST00000595800.1_1_19:7711945-7712134:+|nuORF	ENST00000595800.1_1_19:7711945-7712134:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2894287109375	2	485.290017	968.565481	-0.37363	-0.00018132	0.23408	0.00011359	-0.13955	-6.7724E-05	485.2900089677078	34.525	0.83631	34.35	33.972	34.809	-0.17557					56	20	4	0	0	0	0.15029	1	2537	2537		99.375	14.015	1	2571300			47472	17425	32957	33009	52814	52814					0.07994046822898326
LSARLKPPT	9	Unmodified	_LSARLKPPT_					0	0	0			REV__ENSG00000174721|ENST00000311575|FGFBP3	REV__ENSG00000174721|ENST00000311575|FGFBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7696533203125	2	491.805834	981.597115	-0.25575	-0.00012578	-0.80731	-0.00039704	-1.0631	-0.00052282	491.8053613002659	42.101	0.39694	42.127	41.961	42.358	0.026012					17	11	2	0	0	0	0.024021	1	3821	3821		49.442	5.3247	1	119960	+		47473	26889	32958	33010	52815	52815					0.10558039576847023
LSARNPGL	8	Unmodified	_LSARNPGL_					0	0	0		nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.57196044921875	2	414.240327	826.466101	-0.68554	-0.00028398	1.4351	0.00059446	0.74951	0.00031048	414.2407904857505	40.111	0.82343	40.134	39.873	40.696	0.023003					50	22	3	0	0	0	0.027866	1	3529	3529		44.117	19.613	1	962330			47474	18220	32959	33011	52816	52816					0.045926489288035555
LSARNPGL	8	Unmodified	_LSARNPGL_					0	0	0		nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	414.240327	826.466101	1.0166	0.00042114	-1.2242	-0.0005071	-0.20752	-8.5965E-05	414.2398042823584	39.934	0.82054	39.934	39.661	40.481	0	-0.057241	-0.0011588	NaN	44.117	49	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1005300			47475	18220	32959	33011							0.045926489288035555
LSARNPGL	8	Unmodified	_LSARNPGL_					0	0	0		nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-5|PDLIM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	414.240327	826.466101	-0.15123	-6.2647E-05	0.31128	0.00012895	0.16005	6.6298E-05	414.2403841572875	40.019	0.95515	39.907	39.603	40.558	-0.11222	-0.084916	0.00011326	NaN	44.117	58	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	925330			47476	18220	32959	33011							0.045926489288035555
LSARPLATA	9	Unmodified	_LSARPLATA_					0	0	0		ENST00000456581.1_2_10:131902486-131909070:-|nuORF	ENST00000456581.1_2_10:131902486-131909070:-|nuORF	ENST00000456581.1_2_10:131902486-131909070:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2693176269531	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.70156	1	3211	3211		45.972	1.5951	1	141320000			47477	14598	32960	33012	52817	52817					0.07029491134369437
LSARPQSP	8	Unmodified	_LSARPQSP_					0	0	0			REV__ENST00000310653.10_2_11:73471715-73471934:-|nuORF	REV__ENST00000310653.10_2_11:73471715-73471934:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2370300292969	2	428.237784	854.461016	-0.57765	-0.00024737	0.75769	0.00032447	0.18004	7.7099E-05	428.2379963888757	30.024	1.2759	30.033	29.677	30.953	0.0086708					48	30	2	0	0	0	0.71833	1	1895	1895		65.803	0	1	1201900	+		47478	30192	32961	33013	52818	52818					0.027963450661900424
LSARTWHGI	9	Unmodified	_LSARTWHGI_					0	0	0		ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7843017578125	2	520.785433	1039.55631	-0.15563	-8.105E-05	-3.543	-0.0018451	-3.6986	-0.0019262	520.7839858528259	105.88	0.50427	105.88	105.66	106.17	0.00015259					30	17	2	0	0	0	0.4752	1	13515	13515		60.972	4.2509	1	124860			47479	11884	32962	33014	52819	52819					0.0381169825723191
LSARTWHGI	9	Unmodified	_LSARTWHGI_					0	0	0		ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.785433	1039.55631	0.052304	2.7239E-05	-3.1763	-0.0016541	-3.124	-0.0016269	520.7841541551521	105.78	0.44657	105.78	105.48	105.93	0	-0.058346	0.0018589	NaN	60.972	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85374			47480	11884	32962	33014							0.0381169825723191
LSARTWHGI	9	Unmodified	_LSARTWHGI_					0	0	0		ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	520.785433	1039.55631	-0.089111	-4.6408E-05	-3.4678	-0.001806	-3.5569	-0.0018524	520.7840714436154	105.85	0.58363	105.85	105.4	105.99	-0.0013123	0.011432	0.0015552	NaN	60.972	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160800			47481	11884	32962	33014							0.0381169825723191
LSARTWHGI	9	Unmodified	_LSARTWHGI_					0	0	0		ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.785433	1039.55631	-0.65623	-0.00034175	-2.9255	-0.0015236	-3.5817	-0.0018653	520.78445831576	105.86	0.2933	105.73	105.56	105.85	-0.1328	-0.10542	0.0021201	NaN	60.972	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77206			47482	11884	32962	33014							0.0381169825723191
LSARTWHGI	9	Unmodified	_LSARTWHGI_					0	0	0		ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	ENST00000299563.4_1_11:74553191-74553407:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.785433	1039.55631	0.64004	0.00033332	-5.8895	-0.0030672	-5.2495	-0.0027338	521.282112278334	106.11	0.068718	105.95	105.91	105.98	-0.16132	0.11139	-0.00096715	NaN	60.972	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18265			47483	11884	32962	33014							0.0381169825723191
LSARVARLN	9	Unmodified	_LSARVARLN_					0	0	0		C12orf10-NFX1|1|fusion;nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1	C12orf10-NFX1|1|fusion	C12orf10-NFX1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7665100097656	2	500.306532	998.598512	-0.34787	-0.00017404	-0.4801	-0.0002402	-0.82796	-0.00041424	500.30558297865053	40.691	0.20186	40.714	40.629	40.83	0.023006					7	5	2	0	0	0	0.024457	1	3540	3540		37.159	3.6435	1	92486			47484	195	32963	33015	52820	52820					0.09915673665614122
LSASAAMKNIL	11	Unmodified	_LSASAAMKNIL_					0	0	0			REV__ENST00000261973.11_1_14:73587139-73587298:+|nuORF	REV__ENST00000261973.11_1_14:73587139-73587298:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8153076171875	2	559.815541	1117.61653	-0.85269	-0.00047735	0.80728	0.00045193	-0.045414	-2.5423E-05	559.8159076351509	80.878	2.7987	80.902	79.858	82.657	0.023903					211	67	5	0	0	0	0.97926	1	10018	10018		41.427	0.64845	1	10426000	+		47485	29643	32964	33016	52821	52821					0.06242627805431766
LSASPPQGSPY	11	Unmodified	_LSASPPQGSPY_					0	0	0		nc|ENSG00000176842|P78411-3|IRX5;ENST00000558597.1_2_16:54966274-54967782:+|nuORF	nc|ENSG00000176842|P78411-3|IRX5	nc|ENSG00000176842|P78411-3|IRX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.2709350585938	2	552.272021	1102.52949	0.18695	0.00010325	1.6954	0.00093634	1.8824	0.0010396	552.2712799286783	51.129	1.0605	50.853	50.552	51.613	-0.27643					96	27	7	0	0	0	0.40147	1	5225	5225		82.75	5.9763	1	4750300			47486	16756	32965	33017	52822	52822					-0.0176745514461345
LSASVGVSLI	10	Unmodified	_LSASVGVSLI_					0	0	0			REV__nc|ENSG00000172113|O75414-3|NME6	REV__nc|ENSG00000172113|O75414-3|NME6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2856140136719	2	473.2844	944.554247	0.87359	0.00041345	-1.4401	-0.00068158	-0.56653	-0.00026813	473.2836219251202	83.331	0.51732	83.119	82.876	83.393	-0.21159					24	11	3	0	0	0	0.88896	1	10059	10059		54.776	7.119	1	530690	+		47487	36937	32966	33018	52823	52823					0.079752247287729
LSATGQGCTEP	11	Unmodified	_LSATGQGCTEP_					0	0	0		ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	ENST00000502875.1_1_4:141563950-141565549:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2384033203125	2	532.239864	1062.46517	-0.62255	-0.00033134	-2.7709	-0.0014748	-3.3934	-0.0018061	532.2382545945179	40.089	0.55164	39.94	39.707	40.258	-0.1497					38	14	3	0	0	0	0.95882	1	3463	3463		45.972	3.5761	1	3881400			47488	15678	32967	33019	52824	52824					-0.06355978293049702
LSATLYWF	8	Unmodified	_LSATLYWF_					0	0	0		ENSG00000135973|ENST00000258456|GPR45	ENSG00000135973|ENST00000258456|GPR45	ENSG00000135973|ENST00000258456|GPR45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7665100097656	2	500.760561	999.506569	-0.27633	-0.00013837	-2.4145	-0.0012091	-2.6909	-0.0013475	500.7592397249481	40.787	0.68892	40.81	40.494	41.182	0.023006					38	19	3	0	0	0	0.027866	1	3540	3540		44.531	2.0566	1	370880			47489	4963	32968	33020	52825	52825					0.006795705285639997
LSATVGKSA	9	Unmodified	_LSATVGKSA_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.2391662597656	2	417.239993	832.465432	0.94253	0.00039326	-2.981	-0.0012438	-2.0385	-0.00085055	417.23864032569355	87.794	1.1495	87.813	87.303	88.453	0.018555					48	27	2	0	0	0	0.96322	1	10964	10964		27.882	2.3082	1	2790100	+		47490	28014	32969	33021	52826	52826					0.04249809489101608
LSATVIFNP	9	Unmodified	_LSATVIFNP_					0	0	0		nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2887878417969	2	481.271293	960.528032	-0.046674	-2.2463E-05	0.75627	0.00036397	0.70959	0.00034151	481.2710702258522	66.284	0.42489	66.002	65.788	66.213	-0.28149					33	10	5	0	0	0	0.024263	1	7837	7837		26.693	0	1	330250			47491	6765	32970	33022	52827	52827					0.04618955557270965
LSAVIKNKR	9	Unmodified	_LSAVIKNKR_					0	0	0		ENST00000245046.6_1_3:10004387-10004693:-|nuORF	ENST00000245046.6_1_3:10004387-10004693:-|nuORF	ENST00000245046.6_1_3:10004387-10004693:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7089233398438	2	514.832383	1027.65021	-0.74727	-0.00038472	4.427	0.0022792	3.6797	0.0018944	514.8344910061226	29.777	0.76303	29.604	29.325	30.088	-0.17258					36	17	3	0	0	0	0.024523	1	1859	1859		37.159	12.956	1	600200			47492	11308	32971	33023	52828	52828					0.13749417359508698
LSAVLWCLT	9	Unmodified	_LSAVLWCLT_					0	0	0		nc|ENSG00000186075|Q6X784-2|ZPBP2;ENSG00000186075|ENST00000348931|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.28619384765625	2	503.275521	1004.53649	0.038312	1.9281E-05	-1.0433	-0.00052505	-1.0049	-0.00050576	503.27487350371337	63.315	0.47076	63.094	62.94	63.411	-0.22097					18	11	2	0	0	0	0.024205	1	7126	7126		53.351	12.779	1	874400			47493	9508	32972	33024	52829	52829					0.03440186202237783
LSAVSCLPIV	10	Unmodified	_LSAVSCLPIV_					0	0	0		ENST00000370242.8_1_10:102739012-102743752:-|nuORF;nc|ENSG00000055950|Q8N983|MRPL43	ENST00000370242.8_1_10:102739012-102743752:-|nuORF	ENST00000370242.8_1_10:102739012-102743752:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.290283203125	2	501.288628	1000.5627	-0.20958	-0.00010506	4.0915	0.002051	3.882	0.001946	501.2904390152303	88.357	2.0156	88.219	87.862	89.877	-0.13744					89	47	3	0	0	0	0.941	1	10743	10743		51.335	0	1	1494100			47494	12952	32973	33025	52830	52830					0.06244455373746405
LSCCSLEHLP	10	Unmodified	_LSCCSLEHLP_					0	0	0		ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	ENSG00000081913|ENST00000262719|PHLPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.3005981445312	2	551.257002	1100.49945	-1.2767	-0.00070378	0.80826	0.00044556	-0.46842	-0.00025822	551.2576917718744	51.206	0.43343	51.293	51.077	51.511	0.087006					16	11	2	0	0	0	0.03519	1	5317	5317		15.642	0	1	113070			47495	1719	32974	33026	52831	52831					-0.04677853405837595
LSCEKFPLV	9	Unmodified	_LSCEKFPLV_					0	0	0		ENST00000496359.5_1_10:81565841-81574436:-|nuORF	ENST00000496359.5_1_10:81565841-81574436:-|nuORF	ENST00000496359.5_1_10:81565841-81574436:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7680053710938	2	518.280803	1034.54705	-0.96442	-0.00049984	4.3283	0.0022433	3.3639	0.0017434	518.282793447747	39.376	0.24954	39.277	39.127	39.377	-0.098755					12	6	3	0	0	0	0.024457	1	3341	3341		29.15	0	1	83476			47496	15565	32975	33027	52832	52832					0.031161688566726298
LSCLFAREF	9	Unmodified	_LSCLFAREF_					0	0	0		ENST00000273308.8_2_12:56709793-56710018:-|nuORF	ENST00000273308.8_2_12:56709793-56710018:-|nuORF	ENST00000273308.8_2_12:56709793-56710018:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7930297851562	2	543.276052	1084.53755	-0.41831	-0.00022726	3.6606	0.0019887	3.2422	0.0017614	543.277861118102	34.356	0.34708	34.149	33.895	34.242	-0.20695					11	8	2	0	0	0	0.0245	1	2496	2496		44.377	26.053	1	60478			47497	11664	32976	33028	52833	52833					-0.0013359942884108023
LSCLPPLCPQ	10	Unmodified	_LSCLPPLCPQ_					0	0	0		ENST00000571368.5_1_17:4442349-4442634:-|nuORF	ENST00000571368.5_1_17:4442349-4442634:-|nuORF	ENST00000571368.5_1_17:4442349-4442634:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7732543945312	2	535.772288	1069.53002	-0.69305	-0.00037132	2.1455	0.0011495	1.4525	0.00077819	535.7733329535425	41.788	0.55768	41.558	41.274	41.832	-0.2303					44	14	4	0	0	0	0.80817	1	3712	3712		60.118	5.3419	1	3607700			47498	17036	32977	33029	52834	52834					-0.001960750207899764
LSCLSTLSTF	10	Unmodified	_LSCLSTLSTF_					0	0	0			REV__ENST00000572067.1_1_16:67916768-67917086:+|nuORF	REV__ENST00000572067.1_1_16:67916768-67917086:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.784912109375	2	536.273175	1070.5318	-1.2021	-0.00064466	-2.1028	-0.0011277	-3.3049	-0.0017723	536.2715610336077	56.214	0.7333	55.999	55.78	56.514	-0.21551					37	18	3	0	0	0	0.03519	1	6035	6035		26.693	0	1	1172000	+		47499	35419	32978	33030	52835	52835					-0.0006474273116054974
LSCLSTLSTF	10	Unmodified	_LSCLSTLSTF_					0	0	0			REV__ENST00000572067.1_1_16:67916768-67917086:+|nuORF	REV__ENST00000572067.1_1_16:67916768-67917086:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.273175	1070.5318	-0.80534	-0.00043188	-2.4474	-0.0013125	-3.2527	-0.0017443	536.2715231446249	56.091	0.70021	55.934	55.713	56.413	-0.15656	-0.044605	6.4445E-05	NaN	19.997	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1045400	+		47500	35419	32978	33030							-0.0006474273116054974
LSCMGYTPE	9	Unmodified	_LSCMGYTPE_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7870178222656	2	500.709353	999.404154	-0.60074	-0.0003008	-4.3195	-0.0021628	-4.9203	-0.0024636	500.70600767855456	60.578	0.18592	60.365	60.235	60.421	-0.21339					6	4	2	0	0	0	0.024487	1	6947	6947		17.365	0.89182	1	53801			47501	6674	32979	33031	52836	52836					-0.09557206596866763
LSCPKTNVK	9	Unmodified	_LSCPKTNVK_					0	0	0			REV__nc|ENSG00000033800|O75925-3|PIAS1	REV__nc|ENSG00000033800|O75925-3|PIAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.2478332519531	2	495.276052	988.537551	-0.76712	-0.00037994	-4.3603	-0.0021595	-5.1274	-0.0025395	495.2748011490082	26.74	0.60338	26.577	26.234	26.837	-0.16331					34	14	5	0	0	0	0.024367	1	1375	1375		22.58	0	1	89264	+		47502	20057	32980	33032	52837	52837					0.04282400571150902
LSCPPHHL	8	Unmodified	_LSCPPHHL_					0	0	0			REV__TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	REV__TNS2|p.P495Rfs*25|1|0.19|ENSG00000111077|chr12:53059119-53059119|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.2283630371094	2	452.228905	902.443257	0.55672	0.00025177	-2.3198	-0.0010491	-1.7631	-0.00079731	452.2279602715293	102.95	1.6983	102.82	102.36	104.06	-0.12723					80	40	5	0	0	0	1.0133	1	12828	12828		35.201	1.6851	1	2221600	+		47503	37716	32981	33033	52838	52838					-0.01186693460317656
LSCPYVGTQ	9	Unmodified	_LSCPYVGTQ_					0	0	0			REV__nc|ENSG00000167395|O15015-1|ZNF646	REV__nc|ENSG00000167395|O15015-1|ZNF646	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.8163146972656	2	484.23131	966.448068	0.1269	6.1447E-05	4.1361	0.0020028	4.263	0.0020643	484.23301651488043	34.334	0.45551	34.11	33.883	34.339	-0.22412					18	11	2	0	0	0	0.024263	1	2503	2503		51.335	0	1	199250	+		47504	26139	32982	33034	52839	52839					-0.036498541081982694
LSCRCCRGF	9	Unmodified	_LSCRCCRGF_					0	0	0			REV__nc|ENSG00000117054|P11310-2|ACADM	REV__nc|ENSG00000117054|P11310-2|ACADM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2689819335938	2	522.730432	1043.44631	-0.29443	-0.00015391	3.8438	0.0020093	3.5494	0.0018554	522.732000810602	42.071	0.76542	41.839	41.508	42.273	-0.23186					47	20	3	0	0	0	0.024466	1	3766	3766		12.207	0	1	418020	+		47505	36595	32983	33035	52840	52840					-0.07367509669484207
LSCRIIQF	8	Unmodified	_LSCRIIQF_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.57965087890625	2	490.273312	978.532072	1.5362	0.00075314	2.5526	0.0012515	4.0888	0.0020046	490.27443653252465	19.586	0.54387	19.353	19.126	19.67	-0.23345					18	10	3	0	0	0	0.027866	1	417	417		27.882	0	1	44559	+		47506	20971	32984	33036	52841	52841					0.04194721779356314
LSCSQTKLLP	10	Unmodified	_LSCSQTKLLP_					0	0	0		ENST00000265381.6_1_9:72082773-72082839:-|nuORF	ENST00000265381.6_1_9:72082773-72082839:-|nuORF	ENST00000265381.6_1_9:72082773-72082839:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3092651367188	2	545.302267	1088.58998	0.12278	6.6951E-05	-0.83678	-0.0004563	-0.71401	-0.00038935	545.3016781413917	68.811	1.5559	68.569	68.227	69.782	-0.24278					62	37	2	0	0	0	0.03519	1	7991	7991		58.23	19.476	1	1973400			47507	11592	32985	33037	52842	52842					0.049229389141146385
LSCTKASLS	9	Unmodified	_LSCTKASLS_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.23883056640625	2	455.239135	908.463718	1.3119	0.00059722	-1.1663	-0.00053093	0.14561	6.6289E-05	455.2385073315393	17.736	0.39938	17.582	17.408	17.807	-0.15403					12	7	2	0	0	0	0.50848	1	217	217		58.782	5.4305	1	193620	+		47508	26602	32986	33038	52843	52843					0.005824324088393951
LSCTKASLS	9	Unmodified	_LSCTKASLS_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	455.239135	908.463718	1.3119	0.00059722	-1.1663	-0.00053093	0.14561	6.6289E-05	455.2385073315393	17.736	0.39938	17.582	17.408	17.807	-0.15403	0.021101	-0.00057494	NaN	58.782	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193620	+		47509	26602	32986	33038							0.005824324088393951
LSCVMKSKM	9	Carbamidomethyl (C),Oxidation (M)	_LSC(Carbamidomethyl (C))VM(Oxidation (M))KSKM_	LSC(1)VMKSKM	LSCVM(1)KSKM	LSC(96)VMKSKM	LSCVM(39)KSKM(-39)	0	1	1		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2716064453125	2	550.269055	1098.52356	-1.2426	-0.00068376	2.6416	0.0014536	1.399	0.00076983	550.2701188876392	55.723	0.57547	55.821	55.561	56.137	0.098011					44	15	4	0	0	0	0.16638	1	6098	6098		95.815	10.654	2	1642400			47510	5788	32987	33039	52844	52844	73	246			-0.021763362437923206
LSCVMKSKM	9	Carbamidomethyl (C),Oxidation (M)	_LSC(Carbamidomethyl (C))VM(Oxidation (M))KSKM_					0	1	1		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.269055	1098.52356	-0.25504	-0.00014034	1.8936	0.001042	1.6386	0.00090167	550.2697199350088	56.003	0.8571	56.003	55.75	56.608	0	0.091775	-0.00040537	NaN	95.815	54	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1663400			47511	5788	32987	33039			73	246			-0.021763362437923206
LSCVMKSKM	9	Carbamidomethyl (C),Oxidation (M)	_LSC(Carbamidomethyl (C))VM(Oxidation (M))KSKM_					0	1	1		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.269055	1098.52356	-0.70212	-0.00038636	2.292	0.0012612	1.5898	0.00087484	550.2699463823787	56.065	0.76543	55.909	55.666	56.431	-0.15601	-0.001507	3.3001E-05	NaN	95.815	59	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1682500			47512	5788	32987	33039			73	246			-0.021763362437923206
LSCVSAPHTH	10	Unmodified	_LSCVSAPHTH_					0	0	0			REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.8053588867188	2	526.253108	1050.49166	-0.42257	-0.00022238	-0.26231	-0.00013804	-0.68488	-0.00036042	526.2533009117756	43.079	0.37968	42.841	42.719	43.099	-0.23736					20	9	3	0	0	0	0.03519	1	3910	3910		34.173	3.6689	1	185750	+		47513	27280	32988	33040	52845	52845					-0.03156244611091097
LSCYKVFH	8	Unmodified	_LSCYKVFH_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;LY75|p.Y933Ifs*2|1|0.33|ENSG00000054219|chr2:159852287-159852288|-/T|frameshift_variant;ENST00000484559.1_1_2:160728960-160761235:-|nuORF	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7663269042969	2	498.752213	995.489873	-0.41353	-0.00020625	-1.7408	-0.00086821	-2.1543	-0.0010745	498.751321274356	41.813	0.2202	41.583	41.394	41.614	-0.23029					7	5	2	0	0	0	0.027866	1	3683	3683		40.573	0	1	258330			47514	1169	32989	33041	52846	52846					-0.008052536290279022
LSDADLHSAGI	11	Unmodified	_LSDADLHSAGI_					0	0	0		nc|ENSG00000110077|Q9H2W1-3|MS4A6A	nc|ENSG00000110077|Q9H2W1-3|MS4A6A	nc|ENSG00000110077|Q9H2W1-3|MS4A6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.7747802734375	2	549.774928	1097.5353	-0.63171	-0.0003473	0.052602	2.8919E-05	-0.5791	-0.00031838	549.7747889304002	43.861	0.97858	43.891	43.593	44.572	0.030827					74	27	4	0	0	0	0.56861	1	4088	4088		71.877	1.0613	1	2933300			47515	18167	32990	33042	52847	52847					-0.009563566329461537
LSDAGKRGR	9	Unmodified	_LSDAGKRGR_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7354736328125	2	480.27269	958.530826	1.6219	0.00077894	-0.23415	-0.00011245	1.3877	0.00066649	480.27261977861707	59.668	0.58055	59.668	59.37	59.951	0					41	15	3	0	0	0	0.024025	1	6807	6807		52.937	14.131	1	1656700			47516	4041	32991	33043	52848	52848					0.049902237348078415
LSDAHLDMA	9	Unmodified	_LSDAHLDMA_					0	0	0			REV__ENSG00000138311|ENST00000395254|ZNF365	REV__ENSG00000138311|ENST00000395254|ZNF365	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7247619628906	2	486.726392	971.438231	-0.13129	-6.3903E-05	-3.3808	-0.0016455	-3.5121	-0.0017094	486.7246888748558	100.2	0.76908	100.21	99.743	100.51	0.010117					31	19	3	0	0	0	0.59099	1	12795	12795		53.351	2.1588	1	314130	+		47517	23839	32992	33044	52849	52849					-0.04863042113595384
LSDAPLPL	8	Unmodified	_LSDAPLPL_					0	0	0			REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.5502624511719	2	413.239461	824.46437	-0.40369	-0.00016682	-0.67405	-0.00027854	-1.0777	-0.00044536	413.2390997308274	29.277	0.45496	29.277	29.073	29.528	0					21	11	2	0	0	0	0.027866	1	1819	1819		44.531	17.735	1	606070	+		47518	32928	32993	33045	52850	52850					0.04511595120197853
LSDAPLPL	8	Unmodified	_LSDAPLPL_					0	0	0			REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	413.239461	824.46437	0.028159	1.1636E-05	-1.9938	-0.00082391	-1.9656	-0.00081227	413.2385932797032	29.038	0.46201	29.116	28.865	29.327	0.078344	-0.10385	-0.00054086	NaN	44.531	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562030	+		47519	32928	32993	33045							0.04511595120197853
LSDASSAVYY	10	Unmodified	_LSDASSAVYY_					0	0	0		ENSG00000203883|ENST00000340356|SOX18	ENSG00000203883|ENST00000340356|SOX18	ENSG00000203883|ENST00000340356|SOX18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2484130859375	2	538.250754	1074.48696	-0.956	-0.00051457	0.2964	0.00015954	-0.6596	-0.00035503	538.2507486189704	55.987	0.80597	55.83	55.607	56.413	-0.15656					65	20	5	0	0	0	0.50466	2	6047	6047;6073		87.754	13.238	1	3696100			47520	10286	32994	33046	52851;52852	52851					-0.047308502728583335
LSDAWTYC	8	Unmodified	_LSDAWTYC_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;ENST00000555739.5_1_14:50246474-50249278:+|nuORF	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7354736328125	2	479.702386	957.390218	1.6971	0.00081409	3.9486	0.0018942	5.6457	0.0027082	479.7043305445513	59.829	0.35502	59.829	59.559	59.914	0					20	9	3	0	0	0	0.027866	1	6807	6807		57.811	13.694	1	435050			47521	7424	32995	33047	52853	52853					-0.09018116033655588
LSDFDLAHS	9	Unmodified	_LSDFDLAHS_					0	0	0		ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2639465332031	2	502.737814	1003.46108	-0.39812	-0.00020015	1.8806	0.00094546	1.4825	0.00074531	502.7385069283564	75.819	0.42793	75.546	75.384	75.812	-0.27267					17	10	2	0	0	0	0.024436	1	9008	9008		30.504	0	1	65151			47522	121	32996	33048	52854	52854					-0.040516997244708364
LSDFGLERY	9	Unmodified	_LSDFGLERY_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8079223632812	2	550.274564	1098.53457	-0.33141	-0.00018237	-0.030499	-1.6783E-05	-0.36191	-0.00019915	550.2744689434002	60.115	0.77404	59.867	59.61	60.384	-0.24842					36	19	3	0	0	0	0.024181	1	6681	6681		54.722	33.775	1	894540			47523	7418	32997	33049	52855	52855					-0.010751512819979325
LSDGGSWCGQV	11	Carbamidomethyl (C)	_LSDGGSWC(Carbamidomethyl (C))GQV_	LSDGGSWC(1)GQV		LSDGGSWC(77)GQV		0	1	0		ENST00000489841.5_1_7:99694943-99694994:-|nuORF	ENST00000489841.5_1_7:99694943-99694994:-|nuORF	ENST00000489841.5_1_7:99694943-99694994:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.24853515625	2	583.250763	1164.48697	-0.21029	-0.00012265	-3.3128	-0.0019322	-3.523	-0.0020548	583.248904421307	80.063	0.88266	80.084	79.771	80.654	0.021439					60	20	5	0	0	0	0.48498	1	9852	9852		77.318	13.11	1	2253200			47524	15422	32998	33050	52856	52856	202				-0.08869173544508158
LSDGGSWCGQV	11	Carbamidomethyl (C)	_LSDGGSWC(Carbamidomethyl (C))GQV_	LSDGGSWC(1)GQV		LSDGGSWC(77)GQV		0	1	0		ENST00000489841.5_1_7:99694943-99694994:-|nuORF	ENST00000489841.5_1_7:99694943-99694994:-|nuORF	ENST00000489841.5_1_7:99694943-99694994:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.2488403320312	2	583.250763	1164.48697	-0.49347	-0.00028782	-2.6237	-0.0015303	-3.1171	-0.0018181	583.2490251597295	80.26	1.0732	80.054	79.714	80.787	-0.20633					61	25	3	0	0	0	0.48498	1	9630	9630		77.318	20.597	1	2116200			47525	15422	32998	33050	52857	52857	202				-0.08869173544508158
LSDGLPVHLAN	11	Unmodified	_LSDGLPVHLAN_					0	0	0		AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant;ENSG00000165923|ENST00000525123|AGBL2;nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2	AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2500610351562	2	568.308938	1134.60332	0.69526	0.00039512	1.0248	0.00058239	1.72	0.00097751	568.309250205562	59.53	0.62362	59.353	59.117	59.741	-0.1761					35	15	3	0	0	0	0.024756	1	6619	6619		36.447	12.924	1	881400			47526	43	32999	33051	52858	52858					0.04140513017705416
LSDHTRNS	8	Unmodified	_LSDHTRNS_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2378234863281	2	465.225405	928.436257	-1.4298	-0.0006652	-3.2765	-0.0015243	-4.7063	-0.0021895	465.2239615826717	30.115	0.3213	30.115	29.895	30.216	0					10	7	2	0	0	0	0.027866	1	1913	1913		38.806	16.846	1	181760			47527	4976	33000	33052	52859	52859					-0.030823348071749024
LSDHTWSI	8	Unmodified	_LSDHTWSI_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7354736328125	2	479.735074	957.455596	1.5712	0.00075377	-1.7816	-0.00085468	-0.21036	-0.00010092	479.7342288093958	59.762	2.4881	59.762	58.965	61.453	0					160	66	4	0	0	0	0.74904	1	6807	6807		63.306	13.77	1	57218000	+		47528	28328	33001	33053	52860	52860					-0.02483378516274115
LSDIAFKFNR	10	Unmodified	_LSDIAFKFNR_					0	0	0		nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	606.8330078125	2	605.83258	1209.65061	-1.4358	-0.00086985	2.0222	0.0012251	0.58644	0.00035529	605.8336663424313	54.796	0.28497	54.796	54.623	54.908	0					12	7	2	0	0	0	0.03519	1	5997	5997		32.812	2.4947	1	174810			47529	4183	33002	33054	52861	52861					0.054167922887017994
LSDIASALRY	10	Unmodified	_LSDIASALRY_					0	0	0		ENST00000520201.5_1_8:42129679-42177019:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF	ENST00000520201.5_1_8:42129679-42177019:+|nuORF	ENST00000520201.5_1_8:42129679-42177019:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7798461914062	2	554.803488	1107.59242	-0.80087	-0.00044433	-0.050722	-2.8141E-05	-0.85159	-0.00047247	555.3062701276443	62.501	0.15214	62.317	62.185	62.337	-0.18386					6	3	2	0	0	0	0.03519	1	7038	7038		47.96	21.267	1	135790			47530	2564	33003	33055	52862	52862					0.0429311064342528
LSDITDFCT	9	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))T_	LSDITDFC(1)T		LSDITDFC(110)T		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2383422851562	2	536.23679	1070.45903	-1.0776	-0.00057784	2.8893	0.0015493	1.8117	0.00097149	536.2386998230043	60.435	1.5007	60.435	60.066	61.566	0					126	39	6	0	0	0	0.11848	1	6973	6973		106.42	7.0402	1	29781000	+		47531	28481	33004	33056	52863	52863	372				-0.07338496524585025
LSDITDFCT	9	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))T_	LSDITDFC(1)T		LSDITDFC(94)T		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2384643554688	2	536.23679	1070.45903	-1.0488	-0.00056243	3.1753	0.0017027	2.1264	0.0011403	536.2386558258349	60.689	1.9053	60.475	60.157	62.062	-0.21339					130	50	5	0	0	0	0.17455	1	6983	6983		94.006	6.2521	1	26122000	+		47532	28481	33004	33056	52864	52864	372				-0.07338496524585025
LSDITDFCT	9	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))T_	LSDITDFC(1)T		LSDITDFC(71)T		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2380981445312	2	536.23679	1070.45903	-2.4892	-0.0013348	4.3832	0.0023504	1.8939	0.0010156	536.2394330046777	60.399	1.8368	60.478	60.127	61.964	0.078888					133	48	6	0	0	0	0.33245	1	6848	6848		71.296	7.0884	1	35168000	+		47533	28481	33004	33056	52865	52865	372				-0.07338496524585025
LSDITDFCT	9	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))T_	LSDITDFC(1)T		LSDITDFC(100)T		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.23828125	2	536.23679	1070.45903	-0.52731	-0.00028276	3.6855	0.0019763	3.1582	0.0016936	536.2385506578499	60.803	1.0878	60.597	60.295	61.382	-0.20599					63	26	4	0	0	0	0.13494	2	6775	6775;6789		102.77	9.5779	1	3781600	+		47534	28481	33004	33056	52866;52867	52866	372				-0.07338496524585025
LSDITDFCT	9	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))T_	LSDITDFC(1)T		LSDITDFC(94)T		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2381591796875	2	536.23679	1070.45903	-1.3189	-0.00070723	4.0484	0.0021709	2.7295	0.0014637	536.2389379429719	60.755	1.2972	60.579	60.28	61.577	-0.1761					80	31	6	0	0	0	0.17455	2	6762	6762;6786		94.006	9.0909	1	4527600	+		47535	28481	33004	33056	52868;52869	52868	372				-0.07338496524585025
LSDITDFCTG	10	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))TG_	LSDITDFC(1)TG		LSDITDFC(74)TG		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.7529296875	2	564.747521	1127.48049	0.34095	0.00019255	2.6969	0.0015231	3.0378	0.0017156	564.7487969036598	55.555	0.99566	55.555	55.319	56.314	0					59	27	3	0	0	0	0.62431	2	6137	6137;6173		74.255	10.048	1	5943300	+		47536	28481	33005	33057	52870;52871	52870	372				-0.07815111495892779
LSDITDFCTG	10	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))TG_	LSDITDFC(1)TG		LSDITDFC(110)TG		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.749755859375	2	564.747521	1127.48049	-0.34996	-0.00019764	2.4012	0.0013561	2.0513	0.0011585	564.7491088586585	55.655	1.0202	55.499	55.227	56.247	-0.15602					71	27	5	0	0	0	0.30843	3	6134	6124;6134;6147		108.09	14.892	1	4627900	+		47537	28481	33005	33057	52872;52873;52874	52873	372				-0.07815111495892779
LSDITDFCTG	10	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))TG_	LSDITDFC(1)TG		LSDITDFC(110)TG		0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.7493896484375	2	564.747521	1127.48049	-1.5264	-0.00086201	4.2742	0.0024138	2.7478	0.0015518	564.7497831068806	55.379	1.1003	55.477	55.183	56.283	0.098015					74	29	5	0	0	0	0.27536	3	6041	6030;6041;6054		111.65	13.95	1	5108600	+		47538	28481	33005	33057	52875;52876;52877	52876	372				-0.07815111495892779
LSDITDFCTG	10	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))TG_					0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.747521	1127.48049	-0.94507	-0.00053372	3.4264	0.001935	2.4813	0.0014013	564.7491196584604	55.703	0.86038	55.546	55.112	55.972	-0.15655	-0.0036513	0.00017344	NaN	111.65	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1020700	+		47539	28481	33005	33057			372				-0.07815111495892779
LSDITDFCTG	10	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))TG_					0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.747521	1127.48049	0.020977	1.1847E-05	2.4269	0.0013706	2.4479	0.0013824	564.748788974799	55.809	0.89366	55.593	55.303	56.197	-0.21607	0.042696	-0.00095545	NaN	111.65	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1083500	+		47540	28481	33005	33057			372				-0.07815111495892779
LSDITDFCTG	10	Carbamidomethyl (C)	_LSDITDFC(Carbamidomethyl (C))TG_					0	1	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.747521	1127.48049	-1.2331	-0.00069638	3.2111	0.0018135	1.978	0.0011171	564.7492375054617	55.846	0.99035	55.63	55.168	56.158	-0.21551	0.079931	-6.966E-05	NaN	111.65	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1140500	+		47541	28481	33005	33057			372				-0.07815111495892779
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.3020629882812	2	540.30279	1078.59103	-0.50049	-0.00027041	0.30233	0.00016335	-0.19816	-0.00010706	540.302886178954	56.707	0.82245	56.54	56.284	57.107	-0.1672					64	21	4	0	0	0	0.01896	3	6145	6145;6156;6168		150.36	39.48	1	3467100			47542	9340	33006	33058	52878;52879;52880	52878					0.05487476554662862
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3021240234375	2	540.30279	1078.59103	-0.032077	-1.7331E-05	-0.16956	-9.1612E-05	-0.20163	-0.00010894	540.3026269873168	56.757	0.77629	56.555	56.288	57.064	-0.20208					51	20	4	0	0	0	0.056725	3	6157	6157;6168;6181		126.24	27.661	1	3496100			47543	9340	33006	33058	52881;52882;52883	52881					0.05487476554662862
LSDIVIEKY	9	Unmodified	_LSDIVIEKY_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.3028564453125	2	540.30279	1078.59103	-0.55103	-0.00029772	0.25388	0.00013717	-0.29715	-0.00016055	540.3028594266904	56.841	0.82644	56.616	56.347	57.173	-0.2248					58	21	5	0	0	0	0.034407	3	6155	6155;6167;6180		138.06	28.584	1	3459100			47544	9340	33006	33058	52884;52885;52886	52884					0.05487476554662862
LSDKNIEQY	9	Unmodified	_LSDKNIEQY_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.2777709960938	2	555.277303	1108.54005	-0.24989	-0.00013876	-0.49295	-0.00027372	-0.74284	-0.00041248	555.2770385631751	41.476	1.4615	41.341	40.869	42.33	-0.13553					121	38	7	0	0	0	0.013293	6	3683	3647;3658;3670;3683;3696;3708		176.09	50.273	1	24367000			47545	3912	33007	33059	52887;52888;52889;52890;52891;52892	52890					-0.009874724901919762
LSDKNIEQY	9	Unmodified	_LSDKNIEQY_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.2769775390625	2	555.277303	1108.54005	-0.36585	-0.00020315	-0.45503	-0.00025267	-0.82088	-0.00045581	555.2770727691258	41.721	1.1572	41.493	41.159	42.316	-0.2278					97	30	5	0	0	0	0.012922	5	3681	3669;3681;3693;3706;3720		180.87	40.975	1	24296000			47546	3912	33007	33059	52893;52894;52895;52896;52897	52894					-0.009874724901919762
LSDKNIEQY	9	Unmodified	_LSDKNIEQY_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2767333984375	2	555.277303	1108.54005	-0.33735	-0.00018732	-0.55931	-0.00031057	-0.89665	-0.00049789	555.2770129720093	41.756	1.629	41.526	41.003	42.632	-0.23029					115	43	5	0	0	0	0.014475	5	3670	3670;3681;3693;3706;3719		195.06	50.908	1	26711000			47547	3912	33007	33059	52898;52899;52900;52901;52902	52898					-0.009874724901919762
LSDKSKNELD	10	Unmodified	_LSDKSKNELD_					0	0	0			REV__ENSG00000132383|ENST00000254719|RPA1	REV__ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.7927856445312	2	574.793318	1147.57208	-1.3461	-0.00077373	0.65877	0.00037865	-0.68733	-0.00039507	574.7936939051469	31.769	1.0656	31.769	31.428	32.494	0					78	26	5	0	0	0	0.811	1	2154	2154		59.931	13.959	1	9584000	+		47548	23272	33008	33060	52903	52903					0.0041989519295384525
LSDKSKNELD	10	Unmodified	_LSDKSKNELD_					0	0	0			REV__ENSG00000132383|ENST00000254719|RPA1	REV__ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.7933349609375	2	574.793318	1147.57208	-0.77385	-0.00044481	0.11499	6.6095E-05	-0.65887	-0.00037871	574.7934100799879	31.439	0.96495	31.508	31.166	32.131	0.068962					73	23	5	0	0	0	0.96822	1	2069	2069		49.536	0	1	9108800	+		47549	23272	33008	33060	52904	52904					0.0041989519295384525
LSDKSPVEV	9	Unmodified	_LSDKSPVEV_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.29962158203125	2	487.263665	972.512776	-0.030917	-1.5065E-05	-0.38297	-0.00018661	-0.41389	-0.00020167	487.2634468613588	68.197	1.0347	68.197	67.719	68.754	0					42	26	2	0	0	0	0.024427	1	8249	8249		26.693	17.871	1	774790	+		47550	25192	33009	33061	52905	52905					0.02542043969435781
LSDKSPVEV	9	Unmodified	_LSDKSPVEV_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.263665	972.512776	-0.065173	-3.1757E-05	-0.14442	-7.0371E-05	-0.20959	-0.00010213	487.26359187450754	68.187	0.75539	68.206	67.855	68.61	0.018913	-0.064453	-4.0056E-05	NaN	77.318	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	725980	+		47551	25192	33009	33061							0.02542043969435781
LSDKSPVEV	9	Unmodified	_LSDKSPVEV_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.263665	972.512776	-0.72009	-0.00035087	0.61577	0.00030004	-0.10432	-5.0831E-05	487.26391197136115	68.582	0.60316	68.32	68.063	68.666	-0.26166	0.049655	0.00070077	NaN	77.318	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	664760	+		47552	25192	33009	33061							0.02542043969435781
LSDKSPVEV	9	Unmodified	_LSDKSPVEV_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.263665	972.512776	0.4093	0.00019944	-0.12225	-5.9566E-05	0.28705	0.00013987	487.26337657671274	68.577	0.84086	68.334	68.033	68.874	-0.24277	0.063028	-1.8445E-05	NaN	77.318	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656840	+		47553	25192	33009	33061							0.02542043969435781
LSDKSPVEV	9	Unmodified	_LSDKSPVEV_					0	0	0			REV__ENSG00000158417|ENST00000289371|EIF5B	REV__ENSG00000158417|ENST00000289371|EIF5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.263665	972.512776	0.64979	0.00031662	-0.56224	-0.00027396	0.087554	4.2662E-05	487.26324002808593	68.567	0.5585	68.336	68.039	68.598	-0.23048	0.06553	-0.00044723	NaN	77.318	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548250	+		47554	25192	33009	33061							0.02542043969435781
LSDKVEALRK	10	Unmodified	_LSDKVEALRK_					0	0	0			REV__nc|ENSG00000141985|Q99961-2|SH3GL1	REV__nc|ENSG00000141985|Q99961-2|SH3GL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.843994140625	2	579.845687	1157.67682	-0.307	-0.00017801	-2.9641	-0.0017187	-3.2711	-0.0018967	579.8444082329579	101.32	0.60049	101.15	100.92	101.52	-0.17178					20	12	2	0	0	0	1.1265	1	12572	12572		24.519	0.99649	1	92648	+		47555	24129	33010	33062	52906	52906					0.10429061460149569
LSDLERHSI	9	Unmodified	_LSDLERHSI_					0	0	0		ENSG00000171443|ENST00000301073|ZNF524	ENSG00000171443|ENST00000301073|ZNF524	ENSG00000171443|ENST00000301073|ZNF524	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2386474609375	2	535.285463	1068.55637	-1.0069	-0.00053897	4.2885	0.0022956	3.2816	0.0017566	535.287447211547	60.626	0.60096	60.412	60.118	60.719	-0.2134					29	15	3	0	0	0	0.023454	1	6970	6970		82.241	31.048	1	337040			47556	8147	33011	33063	52907	52907					0.024836534665837462
LSDLERHSI	9	Unmodified	_LSDLERHSI_					0	0	0		ENSG00000171443|ENST00000301073|ZNF524	ENSG00000171443|ENST00000301073|ZNF524	ENSG00000171443|ENST00000301073|ZNF524	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.238037109375	2	535.285463	1068.55637	-1.2591	-0.00067396	-4.1154	-0.0022029	-5.3744	-0.0028768	535.2827574222246	60.897	0.31418	60.644	60.421	60.736	-0.25373					11	7	2	0	0	0	0.024209	1	6781	6781		66.429	7.6473	1	160480			47557	8147	33011	33063	52908	52908					0.024836534665837462
LSDLEVLDL	9	Unmodified	_LSDLEVLDL_					0	0	0		ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	ENSG00000101916|ENST00000218032|TLR8	ENSG00000101916|ENST00000218032|TLR8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7783508300781	2	508.779148	1015.54374	-0.2056	-0.0001046	-0.14289	-7.2697E-05	-0.34848	-0.0001773	508.77896209298814	78.817	1.662	78.835	78.567	80.229	0.018677					72	39	4	0	0	0	0.18915	1	9715	9715		90.777	5.4172	1	3753800			47558	2361	33012	33064	52909	52909					0.03659197283673166
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.2740173339844	2	498.274032	994.533512	-0.43729	-0.00021789	-0.031488	-1.569E-05	-0.46878	-0.00023358	498.2738968711741	54.587	0.84489	54.441	54.141	54.986	-0.14609					44	22	3	0	0	0	0.014475	1	5802	5802		185.72	56.857	1	4077400			47559	2511	33013	33065	52910	52910					0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.2743835449219	2	498.274032	994.533512	-0.064977	-3.2376E-05	-0.51605	-0.00025713	-0.58102	-0.00028951	498.27366154012986	54.704	0.78442	54.473	54.213	54.997	-0.23087					46	21	3	0	0	0	0.013337	2	5813	5813;5824		199.7	84.245	1	3867100			47560	2511	33013	33065	52911;52912	52911					0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.2739562988281	2	498.274032	994.533512	0.62532	0.00031158	-1.0421	-0.00051923	-0.41674	-0.00020765	498.27333163093715	54.691	0.81821	54.485	54.122	54.941	-0.20613					52	21	4	0	0	0	0.015032	1	5797	5797		190.26	69.641	1	3879500			47561	2511	33013	33065	52913	52913					0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.274032	994.533512	0.010315	5.1395E-06	-0.54724	-0.00027268	-0.53693	-0.00026754	498.27297432786827	54.366	0.25417	54.219	54.087	54.341	-0.14785	-0.12911	-5.1883E-05	NaN	185.72	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119630			47562	2511	33013	33065							0.03602634349101663
LSDLGKLSY	9	Unmodified	_LSDLGKLSY_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.274032	994.533512	0.44772	0.00022309	-1.0415	-0.00051895	-0.59377	-0.00029586	498.2733444184948	54.023	0.25126	54.121	53.973	54.225	0.098015	-0.22706	-0.00054443	NaN	185.72	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152370			47563	2511	33013	33065							0.03602634349101663
LSDLGRLSY	9	Unmodified	_LSDLGRLSY_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2738647460938	2	512.277106	1022.53966	-0.61304	-0.00031405	0.24809	0.00012709	-0.36495	-0.00018696	512.2770970038858	55.018	1.0848	54.872	54.533	55.617	-0.14609					65	29	3	0	0	0	0.087669	2	5886	5875;5886		114.89	27.198	1	3123800			47564	6541;1747	33014	33066	52914;52915	52915					0.0292915258062294
LSDLGRLSY	9	Unmodified	_LSDLGRLSY_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.27197265625	2	512.277106	1022.53966	-0.22002	-0.00011271	-0.059773	-3.062E-05	-0.27979	-0.00014333	512.2769082095036	55.139	1.2286	54.908	54.565	55.794	-0.23087					72	32	3	0	0	0	0.087669	2	5903	5892;5903		114.89	37.577	1	4072100			47565	6541;1747	33014	33066	52916;52917	52917					0.0292915258062294
LSDLGRLSY	9	Unmodified	_LSDLGRLSY_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF;KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2738647460938	2	512.277106	1022.53966	0.14637	7.498E-05	-0.53226	-0.00027266	-0.38589	-0.00019768	512.2767524931768	55.09	1.2863	54.884	54.468	55.754	-0.20613					75	35	3	0	0	0	0.09527	2	5877	5877;5892		112.11	32.168	1	4459200			47566	6541;1747	33014	33066	52918;52919	52918					0.0292915258062294
LSDLLSRPN	9	Unmodified	_LSDLLSRPN_					0	0	0			REV__ENST00000568395.1_1_16:2722171-2722456:-|nuORF	REV__ENST00000568395.1_1_16:2722171-2722456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3021545410156	2	507.782556	1013.55056	0.56854	0.0002887	1.4996	0.00076149	2.0682	0.0010502	507.78248603753485	55.371	0.77452	55.371	55.083	55.858	0					64	21	5	0	0	0	0.019502	1	6160	6160		76.774	13.468	1	1772300	+		47567	35340	33015	33067	52920	52920					0.04432554954905754
LSDLSYNSDT	10	Unmodified	_LSDLSYNSDT_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3080444335938	2	557.748576	1113.4826	1.558	0.00086897	-1.1093	-0.00061869	0.44873	0.00025028	557.7479566391436	63.919	0.93694	63.919	63.41	64.347	0					34	25	2	0	0	0	0.03519	1	7437	7437		17.468	0	1	309910	+		47568	25256	33016	33068	52921	52921					-0.0696035948642475
LSDLTMLSIH	10	Unmodified	_LSDLTMLSIH_					0	0	0			REV__ENSG00000171903|ENST00000402119|CYP4F11;REV__ENSG00000186204|ENST00000550308|CYP4F12	REV__ENSG00000171903|ENST00000402119|CYP4F11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.749267578125	2	565.299724	1128.5849	-1.4305	-0.00080864	-4.245	-0.0023997	-5.6755	-0.0032084	565.2978921450006	55.801	0.54469	55.899	55.523	56.067	0.097939					16	12	2	0	0	0	0.03519	1	6054	6054		87.754	16.459	1	305890	+		47569	26615;27837	33017	33069	52922	52922					0.025746350515191807
LSDMAMSEV	9	Unmodified	_LSDMAMSEV_					0	0	0		ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.2789001464844	2	491.714636	981.414719	-0.1111	-5.4629E-05	-1.4539	-0.00071492	-1.565	-0.00076954	491.7137196581267	60.136	0.73191	59.887	59.61	60.342	-0.24842					40	18	3	0	0	0	0.024457	1	6627	6627		21.96	3.6355	1	457510			47570	9979	33018	33070	52923	52923					-0.07673223942413188
LSDPDEVARRW	11	Unmodified	_LSDPDEVARRW_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.561279296875	3	448.561597	1342.66296	-0.91797	-0.00041177	0.2649	0.00011882	-0.65307	-0.00029294	448.5616805380476	48.321	0.84042	48.045	47.701	48.542	-0.27598					67	22	4	0	0	0	0.79085	2	4769	4769;4782		58.246	21.929	1	3604000			47571	4845	33019	33071	52924;52925	52924					0.005337839611001982
LSDPDEVARRW	11	Unmodified	_LSDPDEVARRW_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.56146240234375	3	448.561597	1342.66296	0.21703	9.735E-05	-0.92819	-0.00041635	-0.71116	-0.000319	448.56113277401187	48.069	1.0989	47.882	47.491	48.59	-0.18684					75	29	4	0	0	0	0.64701	1	4746	4746		66.962	16.928	1	3247800			47572	4845	33019	33071	52926	52926					0.005337839611001982
LSDPELTDL	9	Unmodified	_LSDPELTDL_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7807922363281	2	501.75313	1001.49171	-0.56824	-0.00028511	0.98988	0.00049667	0.42164	0.00021156	501.75262810704027	45.366	0.16431	45.218	45.148	45.312	-0.1488					6	4	2	0	0	0	0.024	1	4396	4396		65.803	0	1	79951	+		47573	25379	33020	33072	52927	52927					-0.008979661300827502
LSDPGSGLY	9	Unmodified	_LSDPGSGLY_					0	0	0		ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.72137451171875	2	454.721633	907.428712	0.2252	0.0001024	-0.11488	-5.2238E-05	0.11032	5.0167E-05	454.7214899908399	56.518	0.85062	56.305	55.848	56.699	-0.213					45	21	4	0	0	0	0.08613	1	6133	6133		115.46	38.612	1	1377800			47574	9099	33021	33073	52928	52928					-0.028704871274612742
LSDPGSGLY	9	Unmodified	_LSDPGSGLY_					0	0	0		ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.7217712402344	2	454.721633	907.428712	0.065094	2.96E-05	0.2094	9.5218E-05	0.27449	0.00012482	454.7215762267092	56.555	0.82419	56.33	55.99	56.814	-0.2248					42	20	3	0	0	0	0.013492	2	6103	6103;6115		177.71	80.234	1	1782400			47575	9099	33021	33073	52929;52930	52929					-0.028704871274612742
LSDPGSGLY	9	Unmodified	_LSDPGSGLY_					0	0	0		ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	ENSG00000182108|ENST00000331808|DEXI	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	454.721633	907.428712	-0.12416	-5.6457E-05	0.32401	0.00014733	0.19985	9.0877E-05	454.7217304269193	56.422	0.83084	56.266	55.894	56.725	-0.15656	-0.034446	0.00018194	NaN	177.71	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856130			47576	9099	33021	33073							-0.028704871274612742
LSDQFIKDC	9	Unmodified	_LSDQFIKDC_					0	0	0		ENSG00000106341|ENST00000342032|PPP1R17	ENSG00000106341|ENST00000342032|PPP1R17	ENSG00000106341|ENST00000342032|PPP1R17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2714233398438	2	534.755149	1067.49575	-0.1642	-8.7808E-05	2.8399	0.0015186	2.6757	0.0014308	534.756417569268	45.827	0.62067	45.73	45.494	46.115	-0.096653					34	16	3	0	0	0	0.024527	1	4426	4426		24.519	6.2571	1	1446900			47577	2779	33022	33074	52931	52931					-0.03530199908027498
LSDRKLLL	8	Unmodified	_LSDRKLLL_					0	0	0		ENST00000373433.8_1_20:36687832-36687916:+|nuORF	ENST00000373433.8_1_20:36687832-36687916:+|nuORF	ENST00000373433.8_1_20:36687832-36687916:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.28033447265625	2	479.30821	956.601866	1.3541	0.00064905	-1.1219	-0.00053772	0.23227	0.00011133	479.30754921455497	58.911	0.36395	58.724	58.538	58.902	-0.18705					17	9	2	0	0	0	0.027866	1	6685	6685		57.811	0	1	503700			47578	13078	33023	33075	52932	52932					0.12182923719615246
LSDRKLLL	8	Unmodified	_LSDRKLLL_					0	0	0		ENST00000373433.8_1_20:36687832-36687916:+|nuORF	ENST00000373433.8_1_20:36687832-36687916:+|nuORF	ENST00000373433.8_1_20:36687832-36687916:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.30821	956.601866	1.0323	0.00049477	-1.1521	-0.00055221	-0.11984	-5.7439E-05	479.3075119320385	58.615	0.40714	58.615	58.38	58.787	0	-0.052544	-8.1058E-05	NaN	57.811	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467020			47579	13078	33023	33075							0.12182923719615246
LSDRKLLL	8	Unmodified	_LSDRKLLL_					0	0	0		ENST00000373433.8_1_20:36687832-36687916:+|nuORF	ENST00000373433.8_1_20:36687832-36687916:+|nuORF	ENST00000373433.8_1_20:36687832-36687916:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.30821	956.601866	0.79604	0.00038155	-0.5796	-0.00027781	0.21644	0.00010374	479.3079167433546	58.906	0.35291	58.665	58.461	58.814	-0.24166	-0.0033218	0.00046775	NaN	57.811	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144440			47580	13078	33023	33075							0.12182923719615246
LSDRPLPLL	9	Unmodified	_LSDRPLPLL_					0	0	0			REV__ENST00000571759.1_1_16:70721833-70722010:-|nuORF	REV__ENST00000571759.1_1_16:70721833-70722010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.78411865234375	2	512.313492	1022.61243	1.5074	0.00077226	-1.9063	-0.00097662	-0.3989	-0.00020436	512.3122631278196	59.24	1.615	59.053	58.721	60.336	-0.18705					98	43	4	0	0	0	0.024323	1	6745	6745		44.117	5.3107	1	2534400	+		47581	35414	33024	33076	52933	52933					0.10202906374058784
LSDRPLPLL	9	Unmodified	_LSDRPLPLL_					0	0	0			REV__ENST00000571759.1_1_16:70721833-70722010:-|nuORF	REV__ENST00000571759.1_1_16:70721833-70722010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.78424072265625	2	512.313492	1022.61243	0.042029	2.1532E-05	-0.5625	-0.00028817	-0.52047	-0.00026664	512.312937048381	58.891	1.5797	58.977	58.63	60.21	0.085686					96	42	4	0	0	0	0.024323	1	6646	6646		53.351	10.877	1	2506600	+		47582	35414	33024	33076	52934	52934					0.10202906374058784
LSDRWLHY	8	Unmodified	_LSDRWLHY_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2882080078125	2	545.277441	1088.54033	-0.37113	-0.00020237	0.20047	0.00010931	-0.17066	-9.3055E-05	545.2775795607361	58.141	0.407	57.963	57.826	58.233	-0.17775					15	9	3	0	0	0	0.027866	1	6414	6414		31.955	0	1	962340	+		47583	21977	33025	33077	52935	52935					-0.0004000797966909886
LSDRWLHY	8	Unmodified	_LSDRWLHY_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.277441	1088.54033	-0.22175	-0.00012091	0.089092	4.858E-05	-0.13266	-7.2334E-05	545.2773995100004	57.96	0.61603	57.77	57.52	58.136	-0.19018	-0.1136	-0.0001807	NaN	24.203	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1428900	+		47584	21977	33025	33077							-0.0004000797966909886
LSDRWLHY	8	Unmodified	_LSDRWLHY_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	545.277441	1088.54033	-0.36245	-0.00019764	0.51438	0.00028048	0.15193	8.2841E-05	545.2776835041824	58.151	0.59798	57.918	57.583	58.181	-0.23363	0.03402	0.0002831	NaN	24.203	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1327500	+		47585	21977	33025	33077							-0.0004000797966909886
LSDSFGTSI	9	Unmodified	_LSDSFGTSI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.2470703125	2	463.726915	925.439277	0.35196	0.00016321	0.14459	6.7049E-05	0.49655	0.00023026	463.7290947275035	21.399	0.33427	21.222	21.016	21.35	-0.17721					10	6	2	0	0	0	0.024405	1	667	667		35.618	12.576	1	8442.9			47586	10401	33026	33078	52936	52936					-0.02642504473021745
LSDSGVTQRY	10	Unmodified	_LSDSGVTQRY_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000555656.5_1_14:20915401-20917107:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.2803344726562	2	563.280377	1124.5462	-0.27789	-0.00015653	-0.40774	-0.00022967	-0.68563	-0.0003862	563.2801062662254	37.826	0.63891	37.647	37.363	38.002	-0.17929					52	15	5	0	0	0	0.0074023	3	3060	3060;3070;3082		173.39	56.488	1	4887500			47587	1979	33027	33079	52937;52938;52939	52937					-0.011089542586660173
LSDSGVTQRY	10	Unmodified	_LSDSGVTQRY_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000555656.5_1_14:20915401-20917107:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2801513671875	2	563.280377	1124.5462	-0.90814	-0.00051154	0.36196	0.00020388	-0.54619	-0.00030766	563.2805216024934	37.82	0.61057	37.6	37.35	37.961	-0.21975					52	16	4	0	0	0	1.499E-05	2	3060	3060;3072		213.85	73.88	1	4709100			47588	1979	33027	33079	52940;52941	52940					-0.011089542586660173
LSDSGVTQRY	10	Unmodified	_LSDSGVTQRY_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000555656.5_1_14:20915401-20917107:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2802734375	2	563.280377	1124.5462	-1.1738	-0.00066117	0.55874	0.00031473	-0.61504	-0.00034644	563.2806176758711	37.845	0.76569	37.626	37.384	38.15	-0.21848					53	21	4	0	0	0	0.002678	3	3058	3045;3058;3070		186.41	58.949	1	4936000			47589	1979	33027	33079	52942;52943;52944	52943					-0.011089542586660173
LSDSLPLADD	10	Unmodified	_LSDSLPLADD_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.731689453125	2	523.256037	1044.49752	-0.93765	-0.00049063	3.6572	0.0019136	2.7195	0.001423	523.2577377797242	37.498	0.2769	37.279	37.152	37.429	-0.2195					10	6	2	0	0	0	0.03519	1	2998	2998		19.997	0	1	86659			47590	4271	33028	33080	52945	52945					-0.022948676184114447
LSDSQLKVW	9	Unmodified	_LSDSQLKVW_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;nc|ENSG00000178982|Q9UBQ5-2|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2936401367188	2	538.292756	1074.57096	-0.32411	-0.00017446	2.8132	0.0015143	2.489	0.0013398	538.2937500753592	59.233	0.68098	59.045	58.584	59.265	-0.18795					27	16	3	0	0	0	0.094442	1	6541	6541		112.41	38.436	1	672480			47591	8854	33029	33081	52946	52946					0.036657256147236694
LSDTSSVSVQ	10	Unmodified	_LSDTSSVSVQ_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.78424072265625	2	511.753661	1021.49277	0.051707	2.6461E-05	-2.48	-0.0012691	-2.4283	-0.0012427	512.2554283220672	59.08	0.10648	59.166	59.099	59.206	0.085682					4	2	2	0	0	0	0.03519	1	6646	6646		45.972	8.8131	1	70320	+		47592	20421	33030	33082	52947	52947					-0.017117517611723088
LSDTSVLVK	9	Unmodified	_LSDTSVLVK_					0	0	0			REV__ENST00000518442.5_1_8:109247181-109261015:-|nuORF	REV__ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.28289794921875	2	481.281857	960.549162	-2.0298	-0.00097689	2.9263	0.0014084	0.89656	0.0004315	481.28311661657835	51.967	1.0715	51.698	51.361	52.432	-0.26903					68	28	4	0	0	0	0.35646	1	5352	5352		68.787	0	1	3316400	+		47593	34234	33031	33083	52948	52948					0.06730920866152701
LSDTVLSMET	10	Unmodified	_LSDTVLSMET_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3238525390625	2	548.265547	1094.51654	-0.40438	-0.00022171	-1.9805	-0.0010858	-2.3849	-0.0013075	548.2644221635378	75.497	0.44702	75.238	74.991	75.438	-0.25866					18	10	2	0	0	0	0.03519	1	8906	8906		25.574	9.9322	1	161420			47594	7729	33032	33084	52949	52949					-0.026936543190231532
LSDTWYPD	8	Unmodified	_LSDTWYPD_					0	0	0			REV__ENSG00000145861|ENST00000652664|C1QTNF2	REV__ENSG00000145861|ENST00000652664|C1QTNF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7714538574219	2	498.71909	995.423627	-0.32546	-0.00016232	1.1662	0.00058161	0.84075	0.0004193	498.72065026188983	31.352	0.22318	31.111	31.034	31.258	-0.24109					7	5	2	0	0	0	0.027866	1	2086	2086		7.1934	2.8771	1	93709	+		47595	24438	33033	33085	52950	52950					-0.07426790990086829
LSDVARRP	8	Unmodified	_LSDVARRP_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26385498046875	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.94517	1	10115	10115		45.952	10.334	1	2920900			47596	8810	33034	33086	52951	52951					0.05435722848858404
LSDVGKWH	8	Unmodified	_LSDVGKWH_					0	0	0			REV__ENST00000472045.1_1_5:131819943-131820240:-|nuORF	REV__ENST00000472045.1_1_5:131819943-131820240:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2615966796875	2	471.245609	940.476666	-0.1002	-4.7219E-05	-4.4584	-0.002101	-4.5586	-0.0021482	471.2448964685793	26.168	0.16547	26.145	25.998	26.164	-0.023088					5	3	2	0	0	0	0.027866	1	1299	1299		65.803	32.991	1	31535	+		47597	33195	33035	33087	52952	52952					0.0040463158322836534
LSDYEQEHLIF	11	Unmodified	_LSDYEQEHLIF_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2379455566406	3	465.225992	1392.65615	-0.25993	-0.00012093	2.6627	0.0012387	2.4027	0.0011178	465.22727814957466	30.2	0.58251	30.274	29.92	30.502	0.074314					18	13	2	0	0	0	0.024736	1	1822	1822		31.634	11.604	1	93351	+		47598	25134	33036	33088	52953	52953					-0.024475737101283812
LSDYEQEHLIF	11	Unmodified	_LSDYEQEHLIF_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	465.225992	1392.65615	-1.2927	-0.00060138	3.9682	0.0018461	2.6755	0.0012447	465.2278184873057	30.643	0.49433	30.643	30.467	30.961	0	0.15953	0.0011012	NaN	14.086	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89983	+		47599	25134	33036	33088							-0.024475737101283812
LSDYEQEHLIF	11	Unmodified	_LSDYEQEHLIF_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	465.225992	1392.65615	-0.37452	-0.00017424	3.2502	0.0015121	2.8757	0.0013378	465.2274207478971	30.525	0.37342	30.534	30.373	30.746	0.0086689	0.049861	9.9091E-05	NaN	14.086	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86020	+		47600	25134	33036	33088							-0.024475737101283812
LSEAGEQKPP	10	Unmodified	_LSEAGEQKPP_					0	0	0		ENST00000263401.9_1_11:36295935-36296034:-|nuORF	ENST00000263401.9_1_11:36295935-36296034:-|nuORF	ENST00000263401.9_1_11:36295935-36296034:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3180541992188	2	528.272021	1054.52949	-0.79108	-0.00041791	3.6017	0.0019027	2.8106	0.0014848	528.2735689942712	40.144	1.1263	40.032	39.221	40.347	-0.11223					64	30	3	0	0	0	0.03519	1	3359	3359		19.997	0	1	665810			47601	11534	33037	33089	52954	52954					0.0044054485538254085
LSEAIPESL	9	Unmodified	_LSEAIPESL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7516784667969	2	479.758215	957.501877	0.045787	2.1966E-05	3.6487	0.0017505	3.6945	0.0017725	479.75986359384973	32.296	0.23071	32.296	32.149	32.379	0					7	5	2	0	0	0	0.024405	1	2235	2235		44.117	7.0883	1	75656			47602	2864	33038	33090	52955	52955					0.02142641595139594
LSEALVSQV	9	Unmodified	_LSEALVSQV_					0	0	0		nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1;nc|ENSG00000067221|Q9UBI4-5|STOML1;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	nc|ENSG00000067221|Q9UBI4-4|STOML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.265869140625	2	473.266207	944.517862	0.27369	0.00012953	-0.10396	-4.92E-05	0.16973	8.033E-05	473.2660306892627	74.285	0.81999	74.009	73.777	74.597	-0.27573					40	22	2	0	0	0	0.48817	1	8763	8763		60.118	1.8883	1	3560000			47603	1357	33039	33091	52956	52956					0.04338347832049294
LSEAQAQLA	9	Unmodified	_LSEAQAQLA_					0	0	0			REV__ENSG00000164816|ENST00000330590|DEFA5	REV__ENSG00000164816|ENST00000330590|DEFA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.7614440917969	2	465.748182	929.481811	0.22199	0.00010339	4.0806	0.0019005	4.3026	0.0020039	465.75053170299685	29.226	1.312	29.305	28.654	29.966	0.078346					86	32	5	0	0	0	0.15029	1	1750	1750		99.375	0	1	13199000	+		47604	25806	33040	33092	52957	52957					0.014248906551983964
LSEARSLLN	9	Unmodified	_LSEARSLLN_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.78228759765625	2	501.782556	1001.55056	-0.65016	-0.00032624	1.5418	0.00077363	0.8916	0.00044739	501.78345778123247	45.34	1.2688	45.191	44.796	46.065	-0.1488					99	36	4	0	0	0	0.15366	1	4382	4382		98.629	0	1	6807700			47605	8154	33041	33093	52958	52958					0.04984554954921805
LSEARSLLN	9	Unmodified	_LSEARSLLN_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7825012207031	2	501.782556	1001.55056	-0.12673	-6.3592E-05	0.94722	0.0004753	0.82049	0.00041171	501.7831587693353	45.205	1.3016	45.249	44.858	46.16	0.04388					105	37	4	0	0	0	0.17822	1	4319	4319		93.195	0	1	6786900			47606	8154	33041	33093	52959	52959					0.04984554954921805
LSECFPVTT	9	Unmodified	_LSECFPVTT_					0	0	0			REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF	REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7715759277344	2	498.738968	995.463383	-0.32887	-0.00016402	-3.9735	-0.0019817	-4.3023	-0.0021457	498.73731216815054	31.357	0.89824	31.115	30.794	31.692	-0.24109					54	22	5	0	0	0	0.024506	1	2098	2098		23.042	0	1	2888800	+		47607	35171	33042	33094	52960	52960					-0.03452987311038669
LSEEEQLE	8	Unmodified	_LSEEEQLE_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1;ENST00000473218.5_1_2:227771569-227779114:+|nuORF;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000491490.5_1_2:227771589-227860235:+|nuORF	ENSG00000144468|ENST00000392062|RHBDD1;nc|ENSG00000144468|Q8TEB9-2|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7496337890625	2	488.727112	975.439671	-0.28033	-0.00013701	-3.1174	-0.0015236	-3.3977	-0.0016606	488.726661219581	28.64	0.25237	28.72	28.574	28.826	0.080811					6	5	2	0	0	0	0.027866	1	1630	1630		29.15	7.1897	1	19698			47608	5743;15460	33043	33095	52961	52961					-0.04903129543833984
LSEEQVSEL	9	Unmodified	_LSEEQVSEL_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7685546875	2	517.256037	1032.49752	-0.36048	-0.00018646	-2.8498	-0.0014741	-3.2103	-0.0016605	517.7558534005096	39.468	0.30897	39.245	39.073	39.382	-0.22311					10	7	2	0	0	0	0.024319	1	3354	3354		56.721	26.217	1	49438			47609	5949	33044	33096	52962	52962					-0.017428676184181313
LSEERPRI	8	Unmodified	_LSEERPRI_					0	0	0			REV__nc|ENSG00000182923|Q96MT8-2|CEP63	REV__nc|ENSG00000182923|Q96MT8-2|CEP63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	500.282723	998.550893	1.2789	0.0006398	2.5665	0.001284	3.8454	0.0019238	500.28362662548017	59.583	0.61764	59.583	59.333	59.951	0					30	16	2	0	0	0	0.027866	1	6843	6843		34.173	11.13	1	348610	+		47610	27520	33045	33097	52963	52963					0.051559746747557256
LSEERVRL	8	Unmodified	_LSEERVRL_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2902526855469	2	501.290548	1000.56654	0.49826	0.00024977	-0.41943	-0.00021026	0.078831	3.9517E-05	501.29014568622995	88.196	2.1736	88.169	87.814	89.988	-0.027664					89	51	3	0	0	0	1.0009	1	11093	11093		37.159	0	1	939860			47611	4386	33046	33098	52964	52964					0.06628261191792717
LSEFDAVNY	9	Unmodified	_LSEFDAVNY_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2432250976562	2	529.245472	1056.47639	-0.30385	-0.00016081	-0.52614	-0.00027846	-0.82999	-0.00043927	529.2450700553412	62.762	0.61456	62.504	62.135	62.75	-0.25824					34	18	2	0	0	0	0.45795	1	7045	7045		62.107	3.3255	1	2532200	+		47612	21946	33047	33099	52965	52965					-0.04958832927286494
LSEFLIEPTV	10	Unmodified	_LSEFLIEPTV_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant;ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.2924194335938	2	574.315897	1146.61724	-1.1249	-0.00064604	-3.1042	-0.0017828	-4.2291	-0.0024288	574.314127155339	65.016	0.1209	64.814	64.738	64.859	-0.20254					4	2	2	0	0	0	0.03519	1	7421	7421		40.778	5.6261	1	44781			47613	9775	33048	33100	52966	52966					0.049797457261547606
LSEGTKRKM	9	Unmodified	_LSEGTKRKM_					0	0	0			REV__nc|ENSG00000003756|P52756-2|RBM5	REV__nc|ENSG00000003756|P52756-2|RBM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2484741210938	2	525.292233	1048.56991	-0.31375	-0.00016481	-3.4065	-0.0017894	-3.7203	-0.0019542	525.290299420074	26.415	0.51818	26.247	25.988	26.506	-0.16816					24	13	3	0	0	0	0.024541	1	1399	1399		30.504	0	1	75869	+		47614	36424	33049	33101	52967	52967					0.04757187974155386
LSEHLKKTL	9	Unmodified	_LSEHLKKTL_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2715454101562	2	534.824224	1067.63389	0.76215	0.00040762	-3.5541	-0.0019008	-2.792	-0.0014932	534.8226775384234	59.673	0.33096	59.673	59.482	59.813	0					12	8	2	0	0	0	0.024209	1	6827	6827		66.429	27.623	1	181040	+		47615	23899	33050	33102	52968	52968					0.10278291402755713
LSEHLKKTL	9	Unmodified	_LSEHLKKTL_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.824224	1067.63389	-0.60915	-0.00032579	-0.89768	-0.0004801	-1.5068	-0.00080589	534.8230827512092	59.625	0.25414	59.711	59.579	59.833	0.085682	0.019027	0.0013595	NaN	66.429	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150890	+		47616	23899	33050	33102							0.10278291402755713
LSEHTIRY	8	Unmodified	_LSEHTIRY_					0	0	0		ENSG00000187003|ENST00000333999|ACTL7A	ENSG00000187003|ENST00000333999|ACTL7A	ENSG00000187003|ENST00000333999|ACTL7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7839660644531	2	509.769448	1017.52434	-0.13433	-6.8476E-05	-1.9055	-0.00097139	-2.0399	-0.0010399	509.7686311998826	49.7	0.29732	49.7	49.544	49.842	0					12	7	2	0	0	0	0.027866	1	5131	5131		26.796	1.222	1	176050			47617	9600	33051	33103	52969	52969					0.01628285783431238
LSEIKVSNL	9	Unmodified	_LSEIKVSNL_					0	0	0			REV__ENST00000473205.1_1_9:100760838-100760883:+|nuORF	REV__ENST00000473205.1_1_9:100760838-100760883:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.27716064453125	2	501.795132	1001.57571	0.54595	0.00027396	0.11141	5.5907E-05	0.65737	0.00032986	501.79592957686384	96.315	0.41635	96.321	96.068	96.484	0.0065079					13	9	2	0	0	0	0.024397	1	12265	12265		47.657	5.2612	1	102600	+		47618	33228	33052	33104	52970	52970					0.07498609757476515
LSEIQKKP	8	Unmodified	_LSEIQKKP_					0	0	0		ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7663879394531	2	471.784567	941.554582	-0.016682	-7.8704E-06	-0.80032	-0.00037758	-0.81701	-0.00038545	471.7841040499068	76.759	0.65129	76.531	76.121	76.772	-0.22843					18	15	2	0	0	0	0.027866	1	9397	9397		50.025	5.9077	1	106570			47619	8986	33053	33105	52971	52971					0.0814664444861819
LSEIQKKP	8	Unmodified	_LSEIQKKP_					0	0	0		ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	ENSG00000180611|ENST00000392452|MB21D2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.784567	941.554582	0.7305	0.00034464	-1.3792	-0.00065069	-0.64871	-0.00030605	471.7839117617912	76.509	0.41021	76.52	76.325	76.735	0.011635	-0.0051801	-0.00018086	NaN	50.025	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111670			47620	8986	33053	33105							0.0814664444861819
LSEITAQKY	9	Unmodified	_LSEITAQKY_					0	0	0			REV__ENSG00000116205|ENST00000234827|TCEANC2	REV__ENSG00000116205|ENST00000234827|TCEANC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.8056030273438	2	526.784764	1051.55498	-0.28438	-0.00014981	-1.4336	-0.00075519	-1.718	-0.000905	526.783636424597	42.986	0.22747	42.873	42.735	42.962	-0.11253					9	5	2	0	0	0	0.024535	1	3900	3900		18.324	0	1	76275	+		47621	22269	33054	33106	52972	52972					0.031260193778280154
LSEKFALKS	9	Unmodified	_LSEKFALKS_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.80859375	2	511.797675	1021.5808	0.34679	0.00017749	-3.097	-0.001585	-2.7502	-0.0014075	511.7959316003958	22.188	0.42357	22	21.723	22.147	-0.18894					15	8	2	0	0	0	0.024495	1	743	743		19.997	0	1	57669			47622	8972	33055	33107	52973	52973					0.07086913620094037
LSEKHGFNL	9	Unmodified	_LSEKHGFNL_					0	0	0		ENSG00000111962|ENST00000367463|UST	ENSG00000111962|ENST00000367463|UST	ENSG00000111962|ENST00000367463|UST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2977905273438	2	522.777274	1043.53999	-0.83451	-0.00043626	-0.82643	-0.00043204	-1.6609	-0.0008683	522.7782446638956	51.74	0.37113	51.593	51.406	51.777	-0.14735					12	10	2	0	0	0	0.024405	1	5510	5510		27.882	0	1	138530			47623	3161	33056	33108	52974	52974					0.019965723004588654
LSEKHLISV	9	Unmodified	_LSEKHLISV_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.3021240234375	2	513.303124	1024.5917	-1.1222	-0.00057601	0.82973	0.0004259	-0.29243	-0.00015011	513.3034431017682	51.612	0.60531	51.336	51.078	51.684	-0.27596					40	15	3	0	0	0	0.18915	1	5305	5305		90.777	3.0224	1	1697900			47624	6814	33057	33109	52975	52975					0.0803831599437217
LSEKILGLQV	10	Unmodified	_LSEKILGLQV_					0	0	0		ENSG00000148300|ENST00000371942|REXO4;nc|ENSG00000148300|Q9GZR2-2|REXO4	ENSG00000148300|ENST00000371942|REXO4	ENSG00000148300|ENST00000371942|REXO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3433837890625	2	550.339707	1098.66486	3.2136	0.0017686	4.3637	0.0024015	7.5772	0.0041701	550.3419916148218	17.275	0.34687	17.275	17.102	17.449	0					12	6	3	0	0	0	1.1217	1	151	151		21.96	0	1	95861			47625	6016	33058	33110	52976	52976					0.1194744471699778
LSEKLVLPL	9	Unmodified	_LSEKLVLPL_					0	0	0			REV__ENSG00000172244|ENST00000306862|C5orf34	REV__ENSG00000172244|ENST00000306862|C5orf34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3006591796875	2	506.326068	1010.63758	-0.73824	-0.00037379	0.183	9.2657E-05	-0.55524	-0.00028113	506.3266770087699	32.53	0.18537	32.53	32.457	32.642	0					6	4	2	0	0	0	0.024436	1	2256	2256		23.042	0	1	45655	+		47626	26651	33059	33111	52977	52977					0.13268961176606808
LSELCGILKN	10	Unmodified	_LSELCGILKN_					0	0	0		ENST00000465942.1_1_13:46065604-46085992:+|nuORF;nc|ENSG00000136152|Q96JB2-2|COG3;ENSG00000136152|ENST00000349995|COG3	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3028564453125	2	545.302267	1088.58998	-0.81793	-0.00044602	0.51379	0.00028017	-0.30414	-0.00016585	545.3020464979942	64.76	1.5189	64.558	63.829	65.348	-0.20254					100	37	3	0	0	0	0.61732	1	7423	7423		75.043	13.352	1	4831000			47627	4987	33060	33112	52978	52978					0.049229389141146385
LSELEVLLL	9	Unmodified	_LSELEVLLL_					0	0	0		IRAK3|p.D303Efs*9|1|0.35|ENSG00000090376|chr12:66244501-66244502|-/GATGA|frameshift_variant;nc|ENSG00000090376|Q9Y616-2|IRAK3;ENSG00000090376|ENST00000261233|IRAK3	IRAK3|p.D303Efs*9|1|0.35|ENSG00000090376|chr12:66244501-66244502|-/GATGA|frameshift_variant	IRAK3|p.D303Efs*9|1|0.35|ENSG00000090376|chr12:66244501-66244502|-/GATGA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.78173828125	2	514.815533	1027.61651	0.41963	0.00021603	3.2889	0.0016932	3.7085	0.0019092	514.8158442673539	71.601	0.88911	71.395	71.094	71.984	-0.20614					67	21	5	0	0	0	0.024436	1	8321	8321		38.806	21.441	1	1360700			47628	1929	33061	33113	52979	52979					0.10380951077104328
LSELKPMSY	9	Unmodified	_LSELKPMSY_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3;TMTC3|p.P277Lfs*5|1|0.27|ENSG00000139324|chr12:88166361-88166361|C/-|frameshift_variant	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2762451171875	2	534.275718	1066.53688	-0.66214	-0.00035377	0.86132	0.00046018	0.19918	0.00010642	534.275973042263	52.07	0.78535	51.951	51.575	52.361	-0.11876					40	20	3	0	0	0	0.015512	2	5401	5389;5401		159.28	68.499	1	2952300			47629	5325	33062	33114	52980;52981	52981					0.006275611314549678
LSELKPMSY	9	Unmodified	_LSELKPMSY_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3;TMTC3|p.P277Lfs*5|1|0.27|ENSG00000139324|chr12:88166361-88166361|C/-|frameshift_variant	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.276123046875	2	534.275718	1066.53688	-1.9309	-0.0010316	1.9664	0.0010506	0.035517	1.8976E-05	534.276584130315	52.318	0.92101	52.049	51.511	52.432	-0.26903					42	24	3	0	0	0	0.015512	3	5425	5413;5425;5436		159.28	73.916	1	3108200			47630	5325	33062	33114	52982;52983;52984	52983					0.006275611314549678
LSELKPMSY	9	Unmodified	_LSELKPMSY_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3;TMTC3|p.P277Lfs*5|1|0.27|ENSG00000139324|chr12:88166361-88166361|C/-|frameshift_variant	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2757568359375	2	534.275718	1066.53688	-0.41568	-0.00022209	0.50109	0.00026772	0.085412	4.5634E-05	534.275763139929	52.179	0.61236	51.995	51.741	52.354	-0.18404					39	15	4	0	0	0	0.015512	3	5407	5395;5407;5419		159.28	66.08	1	3067600			47631	5325	33062	33114	52985;52986;52987	52986					0.006275611314549678
LSELPELHAL	10	Unmodified	_LSELPELHAL_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.3137817382812	2	561.313689	1120.61282	0.44946	0.00025229	-2.4887	-0.0013969	-2.0392	-0.0011447	561.3119131491029	70.337	1.0775	70.337	69.75	70.828	0					48	29	3	0	0	0	0.82838	1	8531	8531		58.782	0	1	1033800			47632	6877	33063	33115	52988	52988					0.05734281303239186
LSELPELHAL	10	Unmodified	_LSELPELHAL_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	561.313689	1120.61282	-0.31874	-0.00017891	-1.5918	-0.00089348	-1.9105	-0.0010724	561.3121259548456	70.585	1.2547	70.597	69.871	71.126	0.012421	0.10977	0.00080696	NaN	58.782	57	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	993450			47633	6877	33063	33115							0.05734281303239186
LSELQAFAH	9	Unmodified	_LSELQAFAH_					0	0	0		nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4	nc|ENSG00000137265|Q15306-2|IRF4	nc|ENSG00000137265|Q15306-2|IRF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2857971191406	2	508.263999	1014.51345	0.4696	0.00023868	-0.014273	-7.2542E-06	0.45533	0.00023143	508.2641174073083	58.515	0.41776	58.274	58.044	58.461	-0.24165					16	9	2	0	0	0	0.024412	1	6390	6390		24.203	0	1	201980			47634	5107	33064	33116	52989	52989					0.006768834091303688
LSELRLLF	8	Unmodified	_LSELRLLF_					0	0	0		ENSG00000063180|ENST00000084798|CA11	ENSG00000063180|ENST00000084798|CA11	ENSG00000063180|ENST00000084798|CA11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.3232116699219	2	495.80276	989.590967	0.037606	1.8645E-05	0.69653	0.00034534	0.73413	0.00036399	495.8030362645412	64.122	0.79385	63.871	63.336	64.13	-0.25141					35	21	3	0	0	0	0.027866	1	7530	7530		30.504	0	1	350230			47635	1260	33065	33117	52990	52990					0.09575521345334437
LSELRRLV	8	Unmodified	_LSELRRLV_					0	0	0		ENST00000521111.1_1_8:80679195-80679997:-|nuORF;ENSG00000164683|ENST00000354724|HEY1;nc|ENSG00000164683|Q9Y5J3-2|HEY1;ENSG00000163909|ENST00000372852|HEYL;ENSG00000135547|ENST00000368364|HEY2	ENST00000521111.1_1_8:80679195-80679997:-|nuORF	ENST00000521111.1_1_8:80679195-80679997:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.287353515625	2	493.311284	984.608014	0.46195	0.00022788	-0.78807	-0.00038876	-0.32612	-0.00016088	493.3107696995194	22.464	0.41277	22.262	22.194	22.607	-0.20199					12	8	2	0	0	0	0.027866	1	789	789		25.45	0	1	98260			47636	4908	33066	33118	52991	52991					0.11509441951125154
LSEMKTVFL	9	Oxidation (M)	_LSEM(Oxidation (M))KTVFL_		LSEM(1)KTVFL		LSEM(130)KTVFL	0	0	1		ENST00000303329.8_1_15:80888135-80888297:+|nuORF	ENST00000303329.8_1_15:80888135-80888297:+|nuORF	ENST00000303329.8_1_15:80888135-80888297:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2896118164062	2	542.291368	1082.56818	-0.43055	-0.00023348	-2.8466	-0.0015437	-3.2771	-0.0017771	542.289635572219	104.51	0.7971	104.51	104.2	105	0					67	22	4	0	0	0	0.047345	3	13414	13405;13414;13423		129.68	38.06	1	1300300			47637	11969	33067	33119	52992;52993;52994	52993		471			0.030201341655583747
LSEMKTVFL	9	Oxidation (M)	_LSEM(Oxidation (M))KTVFL_					0	0	1		ENST00000303329.8_1_15:80888135-80888297:+|nuORF	ENST00000303329.8_1_15:80888135-80888297:+|nuORF	ENST00000303329.8_1_15:80888135-80888297:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.291368	1082.56818	-0.58845	-0.00031911	-2.7201	-0.0014751	-3.3086	-0.0017942	542.2897058235827	104.48	0.84262	104.49	104.15	104.99	0.0031357	-0.023511	5.3326E-05	NaN	129.68	65	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330700			47638	11969	33067	33119				471			0.030201341655583747
LSEMKTVFL	9	Oxidation (M)	_LSEM(Oxidation (M))KTVFL_					0	0	1		ENST00000303329.8_1_15:80888135-80888297:+|nuORF	ENST00000303329.8_1_15:80888135-80888297:+|nuORF	ENST00000303329.8_1_15:80888135-80888297:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.291368	1082.56818	-0.57991	-0.00031448	-2.7507	-0.0014917	-3.3307	-0.0018062	542.2896864849201	104.53	0.93264	104.53	104.21	105.15	-0.0015945	0.019603	2.009E-05	NaN	129.68	68	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1342400			47639	11969	33067	33119				471			0.030201341655583747
LSEMTNHQVF	10	Unmodified	_LSEMTNHQVF_					0	0	0			REV__ENST00000421621.2_1_7:44250594-44251878:+|nuORF	REV__ENST00000421621.2_1_7:44250594-44251878:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.8650817871094	3	402.525496	1204.55466	-1.2854	-0.00051741	3.0788	0.0012393	1.7934	0.0007219	402.8592252290288	44.155	0.10763	43.936	43.864	43.972	-0.21939					4	2	2	0	0	0	0.03519	1	4086	4086		20.837	10.733	1	36843	+		47640	32183	33068	33120	52995	52995					-0.03943723613701877
LSEPEFYY	8	Unmodified	_LSEPEFYY_					0	0	0		ENST00000395254.7_1_10:64159552-64159774:+|nuORF	ENST00000395254.7_1_10:64159552-64159774:+|nuORF	ENST00000395254.7_1_10:64159552-64159774:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2691040039062	2	524.237116	1046.45968	-0.49737	-0.00026074	2.6183	0.0013726	2.121	0.0011119	524.2372505649611	34.981	0.36069	35.026	34.869	35.23	0.045357					17	9	3	0	0	0	0.027866	1	2614	2614		12.959	0	1	90055			47641	13509	33069	33121	52996	52996					-0.0616933381322724
LSEPHPEHSQ	10	Unmodified	_LSEPHPEHSQ_					0	0	0		ENST00000487702.1_1_3:184059912-184060866:+|nuORF	ENST00000487702.1_1_3:184059912-184060866:+|nuORF	ENST00000487702.1_1_3:184059912-184060866:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	580.8292236328125	2	580.770177	1159.5258	-1.5207	-0.00088315	0.076463	4.4408E-05	-1.4442	-0.00083874	580.7699822778192	47.72	0.41097	47.72	47.464	47.875	0					19	12	2	0	0	0	0.03519	1	4815	4815		44.377	5.6236	1	165000			47642	15372	33070	33122	52997	52997					-0.047581249184759145
LSEPMHDSA	9	Unmodified	_LSEPMHDSA_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2854309082031	2	493.716024	985.417496	0.36944	0.0001824	0.35614	0.00017583	0.72557	0.00035823	493.7160587766096	51.671	0.54604	51.671	51.466	52.012	0					28	15	3	0	0	0	0.024405	1	5470	5470		35.618	19.976	1	251910	+		47643	27795	33071	33123	52998	52998					-0.07579632493263944
LSEPMHDSA	9	Unmodified	_LSEPMHDSA_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.716024	985.417496	-0.042735	-2.1099E-05	0.96531	0.00047659	0.92257	0.00045549	493.71620857128244	51.722	0.40079	51.604	51.357	51.758	-0.11875	-0.029826	-1.2184E-05	NaN	35.618	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150800	+		47644	27795	33071	33123							-0.07579632493263944
LSEPMHDSA	9	Unmodified	_LSEPMHDSA_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.716024	985.417496	-1.9242	-0.00095002	2.5846	0.001276	0.66034	0.00032602	493.71706895445493	51.954	0.50556	51.685	51.438	51.944	-0.26903	0.051083	0.0015867	NaN	35.618	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161660	+		47645	27795	33071	33123							-0.07579632493263944
LSEPPFALP	9	Unmodified	_LSEPPFALP_					0	0	0		ENST00000421980.5_1_7:99716680-99716935:-|nuORF	ENST00000421980.5_1_7:99716680-99716935:-|nuORF	ENST00000421980.5_1_7:99716680-99716935:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7652587890625	2	485.765843	969.517133	-0.18025	-8.7557E-05	1.8618	0.00090442	1.6816	0.00081686	485.765883638505	101.75	2.1296	101.76	100.58	102.71	0.0073471					64	49	2	0	0	0	0.43973	1	13010	13010		63.306	11.007	1	326100			47646	14000	33072	33124	52999	52999					0.031155531829995198
LSEPSQEEL	9	Unmodified	_LSEPSQEEL_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2697143554688	2	516.248212	1030.48187	-0.36648	-0.0001892	-2.1371	-0.0011033	-2.5036	-0.0012925	516.2466546941873	49.13	0.35453	48.977	48.9	49.254	-0.15277					15	9	2	0	0	0	0.023837	1	5053	5053		64.207	5.4253	1	151650			47647	6111	33073	33125	53000	53000					-0.0321515413547786
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2534790039062	2	512.253297	1022.49204	-0.424	-0.00021719	0.64677	0.00033131	0.22278	0.00011412	512.2535215810951	57.041	1.0419	56.874	56.402	57.444	-0.1672					76	27	4	0	0	0	0.039744	3	6188	6188;6199;6208		133.81	39.806	1	5266700			47648	3265	33074	33126	53001;53002;53003	53001					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2532958984375	2	512.253297	1022.49204	0.16713	8.5611E-05	-0.08572	-4.391E-05	0.081407	4.1701E-05	512.2531502817677	57.078	0.87728	56.876	56.443	57.32	-0.20208					71	23	4	0	0	0	0.03666	3	6204	6204;6213;6227		136.27	45.491	1	6019800			47649	3265	33074	33126	53004;53005;53006	53004					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.25341796875	2	512.253297	1022.49204	-0.099372	-5.0904E-05	0.21735	0.00011134	0.11798	6.0433E-05	512.2533042818275	57.151	1.007	56.926	56.464	57.471	-0.22479					67	26	4	0	0	0	0.067814	3	6199	6199;6208;6221		122.18	36.817	1	5434400			47650	3265	33074	33126	53007;53008;53009	53007					-0.01830546410246825
LSEPSSLQY	9	Unmodified	_LSEPSSLQY_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.253297	1022.49204	-0.51732	-0.000265	0.11981	6.1376E-05	-0.3975	-0.00020362	512.2529354001616	56.811	0.39971	56.908	56.58	56.98	0.096905	0.012243	-0.00012285	NaN	136.27	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110180			47651	3265	33074	33126							-0.01830546410246825
LSEPVSQT	8	Unmodified	_LSEPVSQT_					0	0	0		USP13-PEX5L|1|fusion;nc|ENSG00000114757|Q8IYB4-4|PEX5L;nc|ENSG00000114757|Q8IYB4-5|PEX5L;nc|ENSG00000114757|Q8IYB4-3|PEX5L;nc|ENSG00000114757|Q8IYB4-6|PEX5L;nc|ENSG00000114757|Q8IYB4-2|PEX5L;ENSG00000114757|ENST00000467460|PEX5L	USP13-PEX5L|1|fusion	USP13-PEX5L|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.2659912109375	2	430.721633	859.428712	-0.87481	-0.0003768	-0.61198	-0.00026359	-1.4868	-0.00064039	430.7225268743805	20.315	0.43783	20.315	20.078	20.516	0					10	8	2	0	0	0	0.027866	1	546	546		31.955	1.4512	1	15032			47652	38135	33075	33127	53010	53010					-0.0066248712747665195
LSEQQEKL	8	Unmodified	_LSEQQEKL_					0	0	0		ENST00000592611.5_1_18:34415331-34809581:+|nuORF;ENST00000590617.5_1_18:34415331-34802187:+|nuORF;nc|ENSG00000150477|Q86T90-2|KIAA1328;ENSG00000150477|ENST00000280020|KIAA1328	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7615051269531	2	487.761289	973.508025	0.87643	0.00042749	-1.0967	-0.00053495	-0.22032	-0.00010746	487.7607111216329	59.239	1.0205	59.239	58.86	59.88	0					66	27	3	0	0	0	0.18427	1	6747	6747		143.11	0	1	7920300			47653	6139	33076	33128	53011	53011					0.02021159826665553
LSEQQEKL	8	Unmodified	_LSEQQEKL_					0	0	0		ENST00000592611.5_1_18:34415331-34809581:+|nuORF;ENST00000590617.5_1_18:34415331-34802187:+|nuORF;nc|ENSG00000150477|Q86T90-2|KIAA1328;ENSG00000150477|ENST00000280020|KIAA1328	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7614440917969	2	487.761289	973.508025	-0.089982	-4.389E-05	-0.19013	-9.2738E-05	-0.28011	-0.00013663	487.76116622147674	59.1	1.0938	59.186	58.849	59.943	0.085682					66	29	3	0	0	0	0.30053	1	6647	6647		111.65	0	1	7612000			47654	6139	33076	33128	53012	53012					0.02021159826665553
LSERADWQY	9	Unmodified	_LSERADWQY_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ABHD17B|p.G99Wfs*5|1|0.22|ENSG00000107362|chr9:71874786-71874787|-/A|frameshift_variant;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.274658203125	2	584.275095	1166.53564	-0.79488	-0.00046443	0.41393	0.00024185	-0.38094	-0.00022258	584.2753306579915	49.098	1.3642	48.998	48.689	50.054	-0.1008					85	35	4	0	0	0	0.09527	5	4897	4897;4907;4919;4931;4944		112.11	43.32	1	11690000			47655	2836	33077	33129	53013;53014;53015;53016;53017	53013					-0.040969369131062194
LSERADWQY	9	Unmodified	_LSERADWQY_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ABHD17B|p.G99Wfs*5|1|0.22|ENSG00000107362|chr9:71874786-71874787|-/A|frameshift_variant;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.2743530273438	2	584.275095	1166.53564	-0.80174	-0.00046844	0.21523	0.00012576	-0.58651	-0.00034268	584.2752044034369	49.421	1.4336	49.142	48.825	50.258	-0.27977					91	37	4	0	0	0	0.11727	5	4936	4936;4947;4959;4971;4987		106.68	39.189	1	12059000			47656	2836	33077	33129	53018;53019;53020;53021;53022	53018					-0.040969369131062194
LSERADWQY	9	Unmodified	_LSERADWQY_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ABHD17B|p.G99Wfs*5|1|0.22|ENSG00000107362|chr9:71874786-71874787|-/A|frameshift_variant;nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.2744140625	2	584.275095	1166.53564	-0.56421	-0.00032966	-0.048704	-2.8456E-05	-0.61292	-0.00035811	584.275044587136	49.243	1.2389	49.061	48.738	49.977	-0.18206					84	32	4	0	0	0	0.03666	4	4914	4914;4924;4936;4948		136.27	56.817	1	12459000			47657	2836	33077	33129	53023;53024;53025;53026	53023					-0.040969369131062194
LSERNRRK	8	Unmodified	_LSERNRRK_					0	0	0			REV__nc|ENSG826|Q9BXR3|ERVK-6_gag	REV__nc|ENSG826|Q9BXR3|ERVK-6_gag	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.8115234375	2	529.812513	1057.61047	-1.2677	-0.00067165	0.31142	0.00016499	-0.95629	-0.00050665	530.3140689251255	61.314	0.62354	61.138	60.874	61.497	-0.1761					20	14	2	0	0	0	0.027866	1	6890	6890		37.159	5.6293	1	562260	+		47658	37250	33078	33130	53027	53027					0.08397290408788649
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.2882080078125	2	572.287671	1142.56079	-0.21207	-0.00012137	-0.36042	-0.00020626	-0.57249	-0.00032763	572.2874429127506	52.581	1.324	52.453	52.078	53.402	-0.12705					108	33	5	0	0	0	0.10464	4	5494	5470;5482;5494;5507		109.48	16.341	1	15794000			47659	9722	33079	33131	53028;53029;53030;53031	53030					-0.004788821105421448
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.287109375	2	572.287671	1142.56079	0.45463	0.00026018	-0.9097	-0.00052061	-0.45506	-0.00026043	572.2871093107432	52.842	1.1955	52.584	52.249	53.444	-0.25838					107	30	5	0	0	0	0.071379	2	5512	5499;5512		120.87	27.673	1	12640000			47660	9722	33079	33131	53032;53033	53033					-0.004788821105421448
LSERYAELY	9	Unmodified	_LSERYAELY_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.287353515625	2	572.287671	1142.56079	-0.098481	-5.636E-05	-0.38873	-0.00022247	-0.48722	-0.00027883	572.2874021619314	52.681	1.1696	52.491	52.188	53.357	-0.18981					95	29	5	0	0	0	0.14181	2	5487	5487;5500		101.25	13.964	1	12582000			47661	9722	33079	33131	53034;53035	53034					-0.004788821105421448
LSESANQAF	9	Unmodified	_LSESANQAF_					0	0	0		ENSG00000175634|ENST00000312629|RPS6KB2;ENST00000531765.2_1_11:67201468-67201970:+|nuORF;ENST00000525088.5_1_11:67201689-67202169:+|nuORF	ENSG00000175634|ENST00000312629|RPS6KB2	ENSG00000175634|ENST00000312629|RPS6KB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2691955566406	2	483.729989	965.445425	-0.48251	-0.0002334	0.4307	0.00020834	-0.051809	-2.5062E-05	483.72999976726703	46.237	0.80371	46.035	45.669	46.472	-0.20226					55	21	4	0	0	0	0.024319	1	4438	4438		39.253	0	1	2705200			47662	8578	33080	33132	53036	53036					-0.038679862415278876
LSESEMFAS	9	Unmodified	_LSESEMFAS_					0	0	0		ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	ENSG00000075131|ENST00000261881|TIPIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.71624755859375	2	500.718233	999.421912	0.20167	0.00010098	-3.458	-0.0017315	-3.2563	-0.0016305	500.71636015791665	71.326	0.81264	71.051	70.699	71.511	-0.2751					51	18	4	0	0	0	0.92825	1	8332	8332		30.504	0	1	2230000			47663	1543	33081	33133	53037	53037					-0.07782168070355056
LSESKFKF	8	Unmodified	_LSESKFKF_					0	0	0			REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2711181640625	2	493.271293	984.528032	-0.23713	-0.00011697	-0.070354	-3.4704E-05	-0.30748	-0.00015167	493.27110022279084	64.6	0.91795	64.398	64.105	65.023	-0.20254					59	22	4	0	0	0	0.47665	1	7351	7351		87.754	8.0417	1	2965200	+		47664	33416	33082	33134	53038	53038					0.03514955557284338
LSESKFKF	8	Unmodified	_LSESKFKF_					0	0	0			REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	REV__ENST00000480174.5_1_1:84335647-84372167:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2709655761719	2	493.271293	984.528032	-0.47338	-0.0002335	0.15101	7.449E-05	-0.32236	-0.00015901	493.27119712094833	64.66	0.82652	64.404	64.115	64.941	-0.25562					57	20	4	0	0	0	0.64735	2	7338	7338;7363		71.877	9.7082	1	3105900	+		47665	33416	33082	33134	53039;53040	53039					0.03514955557284338
LSETTPTVV	9	Unmodified	_LSETTPTVV_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.75811767578125	2	473.758215	945.501877	0.80656	0.00038211	-0.67196	-0.00031834	0.1346	6.3769E-05	473.7578949605252	82.761	1.0392	82.541	82.173	83.213	-0.22015					44	23	3	0	0	0	0.4752	1	9975	9975		60.972	4.2509	1	741570			47666	961	33083	33135	53041	53041					0.026946415951329072
LSETTPTVV	9	Unmodified	_LSETTPTVV_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.75799560546875	2	473.758215	945.501877	0.32244	0.00015276	-0.25305	-0.00011988	0.069396	3.2877E-05	473.75808099436915	82.734	1.1183	82.554	82.157	83.275	-0.18079					53	25	3	0	0	0	0.70186	1	9995	9995		45.952	0	1	1089500			47667	961	33083	33135	53042	53042					0.026946415951329072
LSETVRQNT	9	Unmodified	_LSETVRQNT_					0	0	0		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;HELLS|p.Y469Mfs*16|1|0.3|ENSG00000119969|chr10:94588305-94588305|T/-|frameshift_variant;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;ENST00000466552.1_1_10:96331150-96333962:+|nuORF	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.32861328125	2	524.275095	1046.53564	-0.1581	-8.2888E-05	-4.0515	-0.0021241	-4.2096	-0.002207	524.272893998454	79.531	0.74397	79.55	79.15	79.894	0.018669					49	17	4	0	0	0	0.0242	1	9824	9824		42.864	5.0528	1	318400			47668	3781	33084	33136	53043	53043					0.01423063086917864
LSEVHVCTL	9	Unmodified	_LSEVHVCTL_					0	0	0			REV__ENST00000349824.8_1_7:50470235-50470343:+|nuORF	REV__ENST00000349824.8_1_7:50470235-50470343:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8096618652344	2	500.760235	999.505917	-0.039686	-1.9873E-05	-3.2695	-0.0016373	-3.3092	-0.0016571	500.7573394661829	42.327	0.38005	42.353	42.186	42.566	0.026012					24	10	3	0	0	0	0.024381	1	3851	3851		45.952	14.422	1	226940	+		47669	30727	33085	33137	53044	53044					0.0061440781720421
LSEVLNSRSS	10	Unmodified	_LSEVLNSRSS_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|82	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|82	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|82	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2901000976562	2	546.288202	1090.56185	0.15243	8.3273E-05	3.4827	0.0019025	3.6351	0.0019858	546.2901128952682	97.301	1.5594	97.301	96.793	98.353	-3.8147E-05					86	35	4	0	0	0	0.24462	1	12325	12325		115.49	2.0825	1	1708600			47670	425	33086	33138	53045	53045					0.02019332258396389
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.3175659179688	2	634.317491	1266.62043	-1.1801	-0.00074855	1.3802	0.00087549	0.20012	0.00012694	634.3183045953156	36.387	0.88565	36.182	35.953	36.839	-0.20518					55	22	4	0	0	0	2.1725E-10	2	2850	2850;2863		211.86	114.79	1	2955800			47671	7552	33087	33139	53046;53047	53046					-0.0022161116712595685
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.3175048828125	2	634.317491	1266.62043	-0.18725	-0.00011877	0.33917	0.00021514	0.15193	9.6369E-05	634.317650446153	36.408	0.78143	36.191	35.947	36.729	-0.21661					59	19	5	0	0	0	4.1737E-14	2	2853	2843;2853		233.09	139.94	1	3095400			47672	7552	33087	33139	53048;53049	53049					-0.0022161116712595685
LSEVNRTGTQY	11	Unmodified	_LSEVNRTGTQY_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.3174438476562	2	634.317491	1266.62043	1.083	0.00068695	-1.0469	-0.00066406	0.036073	2.2882E-05	634.3168021688932	36.336	1.1335	36.137	35.876	37.01	-0.19829					64	28	4	0	0	0	4.0516E-18	2	2831	2820;2831		238.01	152.85	1	2983600			47673	7552	33087	33139	53050;53051	53051					-0.0022161116712595685
LSEVPVDLPD	10	Unmodified	_LSEVPVDLPD_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.2817993164062	2	542.282054	1082.54956	-1.5192	-0.00082381	-2.0947	-0.0011359	-3.6138	-0.0019597	542.2812297265624	80.793	0.41415	80.641	80.385	80.799	-0.15168					19	9	3	0	0	0	0.03519	1	9990	9990		34.173	5.023	1	245020	+		47674	24168	33088	33140	53052	53052					0.011582957953123696
LSEVTPWGG	9	Unmodified	_LSEVTPWGG_					0	0	0		ENST00000568206.1_1_15:28360544-28362081:-|nuORF	ENST00000568206.1_1_15:28360544-28362081:-|nuORF	ENST00000568206.1_1_15:28360544-28362081:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7550048828125	2	473.23745	944.460347	-0.39627	-0.00018753	-3.8462	-0.0018202	-4.2425	-0.0020077	473.2355766425678	40.122	0.89049	40.145	39.84	40.73	0.023006					65	24	4	0	0	0	0.024262	1	3408	3408		47.916	5.5195	1	5946300			47675	16974	33089	33141	53053	53053					-0.014104943735219422
LSEWRKGAR	9	Unmodified	_LSEWRKGAR_					0	0	0		ENST00000312413.10_1_1:11883798-11886244:+|nuORF	ENST00000312413.10_1_1:11883798-11886244:+|nuORF	ENST00000312413.10_1_1:11883798-11886244:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.8167724609375	2	551.809439	1101.60433	-0.67249	-0.00037108	-0.049222	-2.7161E-05	-0.72171	-0.00039824	551.809493473371	93.534	0.90794	93.542	93.225	94.133	0.0077286					41	21	4	0	0	0	0.023837	1	11767	11767		45.972	0	1	475390			47676	12088	33090	33142	53054	53054					0.05758772177273386
LSEYFSLLT	9	Unmodified	_LSEYFSLLT_					0	0	0		nc|ENSG00000106003|Q8NES3-3|LFNG;ENSG00000106003|ENST00000222725|LFNG	nc|ENSG00000106003|Q8NES3-3|LFNG	nc|ENSG00000106003|Q8NES3-3|LFNG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3054809570312	2	536.78169	1071.54883	-0.21029	-0.00011288	-0.82053	-0.00044044	-1.0308	-0.00055333	536.780756429223	49.145	0.99329	49.145	48.551	49.544	0					62	27	4	0	0	0	0.024457	1	5006	5006		37.159	6.6555	1	1049800			47677	2746	33091	33143	53055	53055					0.01591501146299379
LSEYIQLAGI	10	Unmodified	_LSEYIQLAGI_					0	0	0		ENST00000484411.1_1_10:77163655-77167299:+|nuORF;ENST00000425916.4_1_10:77163018-77167299:+|nuORF;ENST00000486015.1_1_10:77162714-77167299:+|nuORF	ENST00000484411.1_1_10:77163655-77167299:+|nuORF	ENST00000484411.1_1_10:77163655-77167299:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3224487304688	2	553.808239	1105.60193	0.24055	0.00013322	-0.16559	-9.1705E-05	0.074958	4.1513E-05	553.8081873089938	67.964	0.71912	67.983	67.743	68.462	0.018921					37	18	3	0	0	0	0.03519	1	8090	8090		56.721	12.604	1	1016400			47678	14074	33092	33144	53056	53056					0.05334878928965736
LSFCDRCYSTA	11	Unmodified	_LSFCDRCYSTA_					0	0	0		OR5W2|p.L71R|1|0.37|ENSG00000187612|chr11:55914371-55914371|A/C|missense_variant	OR5W2|p.L71R|1|0.37|ENSG00000187612|chr11:55914371-55914371|A/C|missense_variant	OR5W2|p.L71R|1|0.37|ENSG00000187612|chr11:55914371-55914371|A/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.2661743164062	2	633.268098	1264.52164	-0.5095	-0.00032265	-2.8984	-0.0018355	-3.4079	-0.0021581	633.2664544827835	31.64	1.0682	31.709	31.366	32.434	0.068962					78	26	5	0	0	0	0.94885	1	2082	2082		38.754	0	1	4110000			47679	18924	33093	33145	53057	53057					-0.10003673728078866
LSFCRMYSL	9	Unmodified	_LSFCRMYSL_					0	0	0		MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.2711181640625	2	560.269912	1118.52527	-0.41015	-0.00022979	2.9699	0.001664	2.5598	0.0014342	560.2715595691317	93.276	3.4097	93.284	92.421	95.831	0.0077209					205	80	6	0	0	0	0.26966	1	11770	11770		79.713	0.26157	1	17679000			47680	17985	33094	33146	53058	53058					-0.029249591635334582
LSFCRMYSL	9	Unmodified	_LSFCRMYSL_					0	0	0		MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.271484375	2	560.269912	1118.52527	0.085493	4.7899E-05	2.5749	0.0014427	2.6604	0.0014906	560.2712192929854	93.204	2.5144	93.082	92.341	94.856	-0.12215					110	58	4	0	0	0	0.16468	2	11482	11470;11482		96.19	5.4138	1	1927600			47681	17985	33094	33146	53059;53060	53060					-0.029249591635334582
LSFCRMYSL	9	Unmodified	_LSFCRMYSL_					0	0	0		MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|18|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.2713012695312	2	560.269912	1118.52527	-0.22062	-0.00012361	2.7624	0.0015477	2.5418	0.0014241	560.2713593474639	93.27	2.3446	93.126	92.288	94.632	-0.1441					120	54	4	0	0	0	0.26966	2	11461	11461;11500		79.713	7.6702	1	1952000			47682	17985	33094	33146	53061;53062	53061					-0.029249591635334582
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.2664794921875	2	454.26601	906.517468	0.067274	3.056E-05	-0.20912	-9.4996E-05	-0.14185	-6.4436E-05	454.2658649840877	63.157	1.6486	63.157	62.811	64.46	0					110	44	5	0	0	0	0.27973	3	7374	7374;7386;7413		120.62	13.846	1	20337000	+		47683	23105	33095	33147	53063;53064;53065	53063					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.2658996582031	2	454.26601	906.517468	0.18013	8.1825E-05	-0.23805	-0.00010814	-0.057929	-2.6315E-05	454.2658514238575	63.354	1.7777	63.102	62.766	64.544	-0.25141					113	47	5	0	0	0	0.28835	1	7413	7413		116.9	9.8961	1	17489000	+		47684	23105	33095	33147	53066	53066					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.2660827636719	2	454.26601	906.517468	1.3692	0.00062197	-1.4939	-0.00067862	-0.12471	-5.665E-05	454.2652811108138	63.102	1.735	63.156	62.76	64.495	0.054104					110	46	5	0	0	0	0.25873	5	7269	7269;7279;7290;7315;7329		129.68	10.74	1	15933000	+		47685	23105	33095	33147	53067;53068;53069;53070;53071	53067					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.2657470703125	2	454.26601	906.517468	0.16827	7.6438E-05	-0.33377	-0.00015162	-0.16551	-7.5184E-05	454.26580709330284	63.343	1.8518	63.122	62.691	64.543	-0.22098					123	46	5	0	0	0	0.28835	1	7130	7130		116.9	14.13	1	18494000	+		47686	23105	33095	33147	53072	53072					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.2660827636719	2	454.26601	906.517468	-0.18952	-8.6093E-05	0.017387	7.8984E-06	-0.17213	-7.8195E-05	454.2659720125718	63.321	1.7727	63.137	62.746	64.519	-0.18386					126	44	5	0	0	0	0.34573	3	7190	7129;7138;7190		104.75	13.97	1	19236000	+		47687	23105	33095	33147	53073;53074;53075	53075					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.2663269042969	2	454.26601	906.517468	0.34886	0.00015848	-0.53664	-0.00024378	-0.18777	-8.53E-05	454.26572077395105	63.424	1.7052	63.166	62.835	64.54	-0.25824					114	43	4	0	0	0	0.25873	4	7149	7128;7149;7161;7189		129.68	14.224	1	17842000	+		47688	23105	33095	33147	53076;53077;53078;53079	53077					0.06046972902856851
LSFDRFIDL	9	Unmodified	_LSFDRFIDL_					0	0	0			REV__ENSG00000072818|ENST00000158762|ACAP1	REV__ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3002319335938	2	563.300581	1124.58661	-0.84962	-0.00047859	0.61688	0.00034749	-0.23274	-0.0001311	563.3009064605424	83.069	1.2482	83.069	82.793	84.041	0					79	28	4	0	0	0	0.14181	3	10384	10373;10384;10397		101.25	23.935	1	1040600	+		47689	20483	33096	33148	53080;53081;53082	53081					0.029300121317419325
LSFDRFIDL	9	Unmodified	_LSFDRFIDL_					0	0	0			REV__ENSG00000072818|ENST00000158762|ACAP1	REV__ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.3005981445312	2	563.300581	1124.58661	0.48926	0.0002756	-0.86186	-0.00048549	-0.37261	-0.00020989	563.3000428575871	83.069	1.2421	82.979	82.701	83.943	-0.090454					79	28	4	0	0	0	0.094442	2	10356	10345;10356		112.41	22.041	1	1220000	+		47690	20483	33096	33148	53083;53084	53084					0.029300121317419325
LSFDRFIDL	9	Unmodified	_LSFDRFIDL_					0	0	0			REV__ENSG00000072818|ENST00000158762|ACAP1	REV__ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.3009033203125	2	563.300581	1124.58661	-1.0642	-0.00059945	0.78215	0.00044059	-0.28202	-0.00015886	563.3009294669326	82.904	1.3277	82.931	82.617	83.945	0.026558					71	30	3	0	0	0	0.22902	1	10284	10284		85.161	15.533	1	1211100	+		47691	20483	33096	33148	53085	53085					0.029300121317419325
LSFDSRLLN	9	Unmodified	_LSFDSRLLN_					0	0	0			REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7902221679688	2	532.790381	1063.56621	-0.69075	-0.00036803	0.77606	0.00041348	0.085313	4.5454E-05	532.7911414366629	56.124	0.96169	56.124	55.61	56.571	0					77	26	5	0	0	0	0.26966	1	6269	6269		79.713	2.9384	1	7092500	+		47692	32864	33097	33149	53086	53086					0.03696841471969492
LSFEDGQPVQ	10	Unmodified	_LSFEDGQPVQ_					0	0	0		ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant;ENST00000491400.5_1_6:35248907-35255958:+|nuORF;ENST00000486891.5_1_6:35248907-35259582:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2716064453125	2	560.269478	1118.5244	-0.13336	-7.4719E-05	3.4887	0.0019546	3.3554	0.0018799	560.2714295468528	93.283	3.4529	93.283	92.622	96.075	0					214	81	5	0	0	0	0.42812	1	11885	11885		95.815	2.6197	1	17229000			47693	1289	33098	33150	53087	53087					-0.03011759007222281
LSFEDGQPVQ	10	Unmodified	_LSFEDGQPVQ_					0	0	0		ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant;ENST00000491400.5_1_6:35248907-35255958:+|nuORF;ENST00000486891.5_1_6:35248907-35259582:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.2717895507812	2	560.269478	1118.5244	-0.67598	-0.00037873	3.8842	0.0021762	3.2082	0.0017975	560.2716558155962	93.228	2.7313	93.223	92.862	95.593	-0.0042038					190	64	6	0	0	0	0.42812	4	11805	11805;11817;11857;11868		95.815	2.6719	1	17833000			47694	1289	33098	33150	53088;53089;53090;53091	53088					-0.03011759007222281
LSFEDGQPVQ	10	Unmodified	_LSFEDGQPVQ_					0	0	0		ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant;ENST00000491400.5_1_6:35248907-35255958:+|nuORF;ENST00000486891.5_1_6:35248907-35259582:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.271484375	2	560.269478	1118.5244	-0.41015	-0.00022979	3.7449	0.0020982	3.3348	0.0018684	560.2715595691317	93.276	3.4097	93.284	92.421	95.831	0.0077209					205	80	6	0	0	0	0.45418	1	11782	11782		93.143	8.2277	1	17679000			47695	1289	33098	33150	53092	53092					-0.03011759007222281
LSFEDGQPVQ	10	Unmodified	_LSFEDGQPVQ_					0	0	0		ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant;ENST00000491400.5_1_6:35248907-35255958:+|nuORF;ENST00000486891.5_1_6:35248907-35259582:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	ZNF76|p.E139Mfs*42|1|0.18|ENSG00000065029|chr6:35287828-35287834|GAGCAGT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.271484375	2	560.269478	1118.5244	-0.22062	-0.00012361	3.5374	0.0019819	3.3167	0.0018583	560.2713593474639	93.27	2.3446	93.126	92.288	94.632	-0.1441					120	54	4	0	0	0	0.72729	1	11486	11486		65.465	1.2581	1	1952000			47696	1289	33098	33150	53093	53093					-0.03011759007222281
LSFFCFCPL	9	Unmodified	_LSFFCFCPL_					0	0	0			REV__ENST00000552699.5_1_12:50157309-50157486:+|nuORF	REV__ENST00000552699.5_1_12:50157309-50157486:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.820556640625	2	538.750824	1075.4871	-1.3486	-0.00072653	-1.8452	-0.00099412	-3.1938	-0.0017206	538.7495232190612	65.035	0.56845	64.832	64.577	65.146	-0.20254					20	13	2	0	0	0	0.024325	1	7405	7405		40.573	0	1	106260	+		47697	34959	33099	33151	53094	53094					-0.047628450782212894
LSFFQNRW	8	Unmodified	_LSFFQNRW_					0	0	0			REV__ENST00000519665.5_1_8:25297183-25298120:-|nuORF	REV__ENST00000519665.5_1_8:25297183-25298120:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.7767333984375	2	549.279983	1096.54541	0.61884	0.00033991	-1.678	-0.00092171	-1.0592	-0.0005818	549.2789711881285	77.925	0.76084	77.683	77.32	78.081	-0.24232					29	15	3	0	0	0	0.027866	1	9341	9341		47.916	8.6628	1	776430	+		47698	34265	33100	33152	53095	53095					0.0010029588295310532
LSFFRKLRLIR	11	Unmodified	_LSFFRKLRLIR_					0	0	0		ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR	ENSG00000171105|ENST00000302850|INSR	ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.8075866699219	3	483.645267	1447.91397	-1.2367	-0.00059813	3.9174	0.0018946	2.6807	0.0012965	483.98167628393793	64.908	0.49405	64.645	64.379	64.873	-0.2626					17	12	2	0	0	0	0.024873	1	7587	7587		9.6461	3.9474	1	83554			47699	8111	33101	33153	53096	53096					0.2079325246420467
LSFGFSWFW	9	Unmodified	_LSFGFSWFW_					0	0	0		nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1	nc|ENSG00000223802|P27544-2|CERS1	nc|ENSG00000223802|P27544-2|CERS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.2947998046875	2	588.779285	1175.54402	-0.36266	-0.00021353	4.2236	0.0024868	3.861	0.0022733	589.2825677776005	78.259	0.51243	78.028	77.834	78.346	-0.23141					15	11	2	0	0	0	0.024487	1	9319	9319		11.511	0	1	89470			47700	10644	33102	33154	53097	53097					-0.03673338205817345
LSFGNTCEYM	10	Unmodified	_LSFGNTCEYM_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.7384033203125	2	582.738642	1163.46273	-1.3026	-0.0007591	1.1144	0.00064941	-0.18823	-0.00010969	582.7391588821214	66.627	0.62627	66.404	66.066	66.692	-0.22374					53	19	5	0	0	0	0.62431	2	7662	7662;7673		74.255	2.3776	1	6597400	+		47701	22264	33103	33155	53098;53099	53098					-0.11246150022384427
LSFGNTCEYM	10	Unmodified	_LSFGNTCEYM_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.738525390625	2	582.738642	1163.46273	-0.94751	-0.00055215	0.78146	0.00045538	-0.16605	-9.6766E-05	582.7389270539771	66.647	0.74976	66.402	65.891	66.64	-0.24517					52	22	4	0	0	0	0.77808	1	7638	7638		62.107	9.1707	1	6967600	+		47702	22264	33103	33155	53100	53100					-0.11246150022384427
LSFHGANVLTP	11	Unmodified	_LSFHGANVLTP_					0	0	0			REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.3101806640625	2	578.31148	1154.60841	-0.063867	-3.6935E-05	-1.5082	-0.00087219	-1.572	-0.00090912	578.3104410652635	109.54	0.36329	109.41	109.26	109.63	-0.12453					29	16	2	0	0	0	1.0429	1	13490	13490		27.047	0.3544	1	1325600	+		47703	28640	33104	33156	53101	53101					0.037288168803115695
LSFHLPLTL	9	Unmodified	_LSFHLPLTL_					0	0	0			REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF	REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8184204101562	2	520.810585	1039.60662	0.031005	1.6148E-05	-3.8166	-0.0019877	-3.7856	-0.0019716	520.8086064773083	71.397	1.1058	71.397	71.105	72.211	0					71	28	4	0	0	0	0.024323	1	8764	8764		20.947	0	1	6813300	+		47704	35727	33105	33157	53102	53102					0.08839807862364069
LSFHLPLTL	9	Unmodified	_LSFHLPLTL_					0	0	0			REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF	REV__ENST00000591716.6_1_19:35651643-35657154:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.26904296875	2	520.810585	1039.60662	-0.19975	-0.00010403	-0.93811	-0.00048858	-1.1379	-0.00059261	520.8103826670824	75.149	0.56685	74.905	74.549	75.116	-0.24455					32	13	4	0	0	0	0.024	1	9193	9193		65.803	0	1	295020	+		47705	35727	33105	33157	53103	53103					0.08839807862364069
LSFHVALI	8	Unmodified	_LSFHVALI_					0	0	0		ENST00000338492.8_1_10:134018945-134019089:+|nuORF	ENST00000338492.8_1_10:134018945-134019089:+|nuORF	ENST00000338492.8_1_10:134018945-134019089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.268310546875	2	450.271096	898.527639	-1.0604	-0.00047746	-3.7918	-0.0017074	-4.8522	-0.0021848	450.26937028227553	48.988	1.0316	49.063	48.736	49.768	0.074196					51	27	2	0	0	0	0.48546	1	4960	4960		86.935	1.5751	1	8686700			47706	12442	33106	33158	53104	53104					0.07431580628076517
LSFHVALI	8	Unmodified	_LSFHVALI_					0	0	0		ENST00000338492.8_1_10:134018945-134019089:+|nuORF	ENST00000338492.8_1_10:134018945-134019089:+|nuORF	ENST00000338492.8_1_10:134018945-134019089:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	450.271096	898.527639	-0.032552	-1.4657E-05	-4.8095	-0.0021656	-4.842	-0.0021802	450.26891668657606	49.282	1.0247	49.13	48.719	49.743	-0.15277	0.033907	-0.00016937	NaN	86.935	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8769300			47707	12442	33106	33158							0.07431580628076517
LSFIAPSE	8	Unmodified	_LSFIAPSE_					0	0	0			REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF	REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.2530517578125	2	432.229094	862.443634	0.0053508	2.3128E-06	-3.3936	-0.0014668	-3.3883	-0.0014645	432.2275010220566	31.428	0.22073	31.276	31.197	31.417	-0.15231					7	5	2	0	0	0	0.027866	1	2085	2085		60.294	42.929	1	40295	+		47708	29883	33107	33159	53105	53105					0.006910047405199293
LSFINAIILA	10	Unmodified	_LSFINAIILA_					0	0	0			REV__ENST00000381692.6_1_21:34948164-34948677:+|nuORF	REV__ENST00000381692.6_1_21:34948164-34948677:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2640991210938	2	537.831517	1073.64848	-1.2895	-0.00069356	0.018109	9.7394E-06	-1.2714	-0.00068382	537.8313816300112	60.569	0.4523	60.316	60.092	60.544	-0.25373					17	10	2	0	0	0	0.03519	1	6757	6757		31.53	0	1	199200	+		47709	31522	33108	33160	53106	53106					0.11460363550895636
LSFIRPPEN	9	Unmodified	_LSFIRPPEN_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000557391.1_1_14:24028960-24029655:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.6962280273438	2	536.792924	1071.57129	-1.4504	-0.00077856	-1.7718	-0.00095108	-3.2222	-0.0017296	537.2926227199957	43.891	0.18604	43.891	43.836	44.022	0					6	4	2	0	0	0	0.02435	1	4153	4153		42.396	16.946	1	85861			47710	10532	33109	33161	53107	53107					0.03837145334568959
LSFKQLAGLV	10	Unmodified	_LSFKQLAGLV_					0	0	0			REV__ENSG00000135931|ENST00000611582|ARMC9	REV__ENSG00000135931|ENST00000611582|ARMC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.327880859375	2	538.329142	1074.64373	-1.1022	-0.00059334	0.57019	0.00030695	-0.532	-0.00028639	538.3292044058085	81.798	0.81689	81.824	81.372	82.189	0.025711					49	19	4	0	0	0	0.42446	2	10142	10128;10142		96.19	27.706	1	1371100	+		47711	23601	33110	33162	53108;53109	53109					0.10939479408125408
LSFKQLAGLV	10	Unmodified	_LSFKQLAGLV_					0	0	0			REV__ENSG00000135931|ENST00000611582|ARMC9	REV__ENSG00000135931|ENST00000611582|ARMC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3294677734375	2	538.329142	1074.64373	0.071696	3.8596E-05	-0.027796	-1.4963E-05	0.0439	2.3633E-05	538.3290063340725	81.772	1.0242	81.543	81.271	82.295	-0.2289					55	23	3	0	0	0	0.69662	1	9839	9839		67.494	6.5217	1	886860	+		47712	23601	33110	33162	53110	53110					0.10939479408125408
LSFKRSDVL	9	Unmodified	_LSFKRSDVL_					0	0	0			REV__ENST00000311212.8_1_8:102213857-102217695:-|nuORF	REV__ENST00000311212.8_1_8:102213857-102217695:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.8092041015625	2	532.808574	1063.60259	0.21512	0.00011462	1.237	0.00065911	1.4522	0.00077372	532.8088655419347	70.903	1.2018	70.903	70.44	71.642	0					100	29	6	0	0	0	0.5973	1	8559	8559		52.937	10.541	1	3105700	+		47713	30202	33111	33163	53111	53111					0.07333718368658992
LSFLAERKL	9	Unmodified	_LSFLAERKL_					0	0	0			REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.823974609375	2	538.826766	1075.63898	-1.3148	-0.00070848	0.15409	8.3027E-05	-1.1608	-0.00062545	538.8266873541683	50.827	1.2602	50.909	50.345	51.605	0.081848					89	35	4	0	0	0	0.19099	1	5285	5285		90.37	2.6734	1	5852200	+		47714	34731	33112	33164	53112	53112					0.1041859526535518
LSFLGHIDEV	10	Unmodified	_LSFLGHIDEV_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.7716674804688	2	565.298039	1128.58152	-0.88715	-0.00050151	-3.4815	-0.0019681	-4.3687	-0.0024696	565.2960511314669	44.303	0.62881	44.198	43.96	44.589	-0.10468					41	16	3	0	0	0	0.03519	1	4175	4175		42.396	16.946	1	2285900	+		47715	21674	33113	33165	53113	53113					0.02237708269126415
LSFLGHIDEV	10	Unmodified	_LSFLGHIDEV_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.7715454101562	2	565.298039	1128.58152	-0.78505	-0.00044379	-3.495	-0.0019757	-4.28	-0.0024195	565.2959827651515	44.521	0.78479	44.277	44.01	44.795	-0.2444					48	20	3	0	0	0	0.03519	1	4168	4168		58.782	22.335	1	2173500	+		47716	21674	33113	33165	53114	53114					0.02237708269126415
LSFLGHIDEV	10	Unmodified	_LSFLGHIDEV_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.7709350585938	2	565.298039	1128.58152	-1.1018	-0.00062284	-3.1375	-0.0017736	-4.2393	-0.0023965	565.2961905001081	44.489	0.85112	44.27	43.972	44.823	-0.21938					49	22	3	0	0	0	0.03519	1	4180	4180		60.972	21.719	1	2318200	+		47717	21674	33113	33165	53115	53115					0.02237708269126415
LSFLGHIDEV	10	Unmodified	_LSFLGHIDEV_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.298039	1128.58152	-1.4982	-0.00084691	-2.4506	-0.0013853	-3.9487	-0.0022322	565.2965021545998	44.137	0.85299	44.137	43.872	44.725	0	-0.076152	0.00054041	NaN	34.173	63	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3353600	+		47718	21674	33113	33165							0.02237708269126415
LSFLGHIDEV	10	Unmodified	_LSFLGHIDEV_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.298039	1128.58152	-1.4072	-0.00079548	-2.3968	-0.0013549	-3.804	-0.0021504	565.2965618244491	44.3	0.81799	44.155	43.883	44.701	-0.14471	-0.057286	0.00060118	NaN	34.173	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3231400	+		47719	21674	33113	33165							0.02237708269126415
LSFLGHIDEV	10	Unmodified	_LSFLGHIDEV_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.298039	1128.58152	-0.99782	-0.00056407	-2.8407	-0.0016058	-3.8385	-0.0021699	565.2962755778171	44.203	0.79044	44.239	43.959	44.749	0.0369	0.026791	9.936E-05	NaN	34.173	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2861300	+		47720	21674	33113	33165							0.02237708269126415
LSFLPIYTNIP	11	Unmodified	_LSFLPIYTNIP_					0	0	0		ENST00000259523.10_1_8:128747712-128748060:+|nuORF	ENST00000259523.10_1_8:128747712-128748060:+|nuORF	ENST00000259523.10_1_8:128747712-128748060:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	639.3626098632812	2	639.360639	1276.70673	1.7487	0.0011181	2.274	0.0014539	4.0227	0.002572	639.3619295594426	109.95	0.62169	109.95	109.73	110.35	0					69	21	5	0	0	0	1.0292	1	13970	13970		30.318	0	1	2552900			47721	11436	33114	33166	53116	53116					0.07944000405518636
LSFLVLLEDES	11	Unmodified	_LSFLVLLEDES_					0	0	0		ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	ENSG00000135476|ENST00000257934|ESPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.23809814453125	3	422.227221	1263.65983	0.037871	1.599E-05	-2.5013	-0.0010561	-2.4634	-0.0010401	422.2260157864114	32.563	0.70745	32.327	31.998	32.705	-0.23666					37	16	3	0	0	0	0.024723	1	2297	2297		17.167	0	1	642710			47722	4902	33115	33167	53117	53117					0.03855096063716701
LSFLVMLFV	9	Unmodified	_LSFLVMLFV_					0	0	0			REV__ENSG00000138185|ENST00000371205|ENTPD1	REV__ENSG00000138185|ENST00000371205|ENTPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.752197265625	2	534.811739	1067.60893	-1.3148	-0.00070316	4.1989	0.0022456	2.8842	0.0015425	535.3152687926852	40.294	0.30557	40.064	39.891	40.197	-0.23021					13	7	2	0	0	0	0.024535	1	3444	3444		33.516	11.813	1	171640	+		47723	23833	33116	33168	53118	53118					0.07782520275827665
LSFPAIAL	8	Unmodified	_LSFPAIAL_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.894775390625	2	416.252372	830.49019	-0.55485	-0.00023096	-3.8236	-0.0015916	-4.3785	-0.0018226	416.2505348985088	30.161	0.46677	29.916	29.655	30.122	-0.24415					15	10	2	0	0	0	0.027866	1	1907	1907		44.531	16.277	1	57415			47724	7503	33117	33169	53119	53119					0.06816489362461198
LSFPAIAL	8	Unmodified	_LSFPAIAL_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8947448730469	2	416.252372	830.49019	0.119	4.9535E-05	-3.8791	-0.0016147	-3.7601	-0.0015652	416.2506085670912	30.104	0.63367	29.954	29.626	30.259	-0.14952					21	14	2	0	0	0	0.027866	1	1889	1889		44.531	28.889	1	82393			47725	7503	33117	33169	53120	53120					0.06816489362461198
LSFPSGLAVV	10	Unmodified	_LSFPSGLAVV_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.28668212890625	2	495.286943	988.559333	0.098235	4.8654E-05	-0.32089	-0.00015894	-0.22266	-0.00011028	495.2867927615451	67.123	2.1847	67.123	66.714	68.898	0					130	55	5	0	0	0	0.96965	1	8050	8050		49.442	0	1	21018000	+		47726	26372	33118	33170	53121	53121					0.06459528591381059
LSFPSGLAVV	10	Unmodified	_LSFPSGLAVV_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2866516113281	2	495.286943	988.559333	-0.13546	-6.7092E-05	-0.29395	-0.00014559	-0.42941	-0.00021268	495.28680979725357	67.491	1.8866	67.203	66.791	68.678	-0.28834					134	47	6	0	0	0	0.79525	1	8069	8069		60.972	0	1	20618000	+		47727	26372	33118	33170	53122	53122					0.06459528591381059
LSFPSGLAVV	10	Unmodified	_LSFPSGLAVV_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2867126464844	2	495.286943	988.559333	0.071989	3.5655E-05	-0.37385	-0.00018516	-0.30186	-0.00014951	495.28677554173083	67.25	1.6492	67.274	66.855	68.504	0.023903					121	41	6	0	0	0	0.67706	1	7973	7973		68.787	0	1	22084000	+		47728	26372	33118	33170	53123	53123					0.06459528591381059
LSFPSGLAVV	10	Unmodified	_LSFPSGLAVV_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2869567871094	2	495.286943	988.559333	0.28041	0.00013888	-0.074394	-3.6847E-05	0.20601	0.00010204	495.28680280311136	67.466	0.95113	67.211	66.87	67.821	-0.25516					62	22	4	0	0	0	1.0271	1	7751	7751		42.396	0	1	5314400	+		47729	26372	33118	33170	53124	53124					0.06459528591381059
LSFPSLLPS	9	Unmodified	_LSFPSLLPS_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MSMS	OPSCC_39_ClassI_Rep-3	3	480.77349853515625	2	480.773668	959.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.344	1	93.351	92.851	93.851	0.0077286								0	0	0	0.13392	1	11778	11778		84.916	0	1				47730	8942	33119	33171	53125	53125					0.05139839700041193
LSFPSLLPS	9	Unmodified	_LSFPSLLPS_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MSMS	OPSCC_39_ClassI_Rep-3	3	480.7733459472656	2	480.773668	959.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.521	1	93.528	93.028	94.028	0.0077286								0	0	0	0.024239	1	11803	11803		124.59	3.9733	1				47731	8942	33119	33171	53126	53126					0.05139839700041193
LSFQHSPE	8	Unmodified	_LSFQHSPE_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7663879394531	2	472.727249	943.439946	0.032066	1.5158E-05	-0.98798	-0.00046704	-0.95591	-0.00045189	472.72669054876434	76.865	0.41145	76.636	76.279	76.691	-0.22843					11	9	2	0	0	0	0.027866	1	9397	9397		42.474	18.272	1	52113			47732	8012	33120	33172	53127	53127					-0.03403665033329162
LSFQPQLL	8	Unmodified	_LSFQPQLL_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2535400390625	2	473.273835	944.533118	-0.291	-0.00013772	-4.4288	-0.002096	-4.7198	-0.0022338	473.2716275025148	30.479	0.58065	30.553	30.337	30.917	0.074314					26	13	4	0	0	0	0.027866	1	1890	1890		26.796	0	1	316730	+		47733	20254	33121	33173	53128	53128					0.05863259419891165
LSFQTAQI	8	Unmodified	_LSFQTAQI_					0	0	0			REV__PAPOLB|p.E574Q|1|0.08|ENSG00000218823|chr7:4860091-4860091|C/G|missense_variant	REV__PAPOLB|p.E574Q|1|0.08|ENSG00000218823|chr7:4860091-4860091|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.2657470703125	2	454.247818	906.481082	0.18507	8.4066E-05	0.96019	0.00043616	1.1453	0.00052023	454.2478206621566	63.343	0.31749	63.122	62.94	63.257	-0.22097					10	7	2	0	0	0	0.027866	1	7130	7130		113.41	5.3241	1	224230	+		47734	37344	33122	33174	53129	53129					0.024100960061332444
LSFRVVATI	9	Unmodified	_LSFRVVATI_					0	0	0		ENST00000216297.6_1_14:21837363-21837492:-|nuORF	ENST00000216297.6_1_14:21837363-21837492:-|nuORF	ENST00000216297.6_1_14:21837363-21837492:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.3085021972656	2	503.30821	1004.60187	-0.99572	-0.00050116	1.0375	0.00052217	0.041754	2.1015E-05	503.3086225541142	65.353	1.3143	65.08	64.675	65.99	-0.27282					80	35	4	0	0	0	0.17822	1	7687	7687		93.195	5.4412	1	5350400			47735	11160	33123	33175	53130	53130					0.09974923719619255
LSFRVVATI	9	Unmodified	_LSFRVVATI_					0	0	0		ENST00000216297.6_1_14:21837363-21837492:-|nuORF	ENST00000216297.6_1_14:21837363-21837492:-|nuORF	ENST00000216297.6_1_14:21837363-21837492:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7606506347656	2	503.30821	1004.60187	-0.37161	-0.00018703	-0.056436	-2.8405E-05	-0.42804	-0.00021544	503.30812386993193	65.268	0.56916	65.033	64.768	65.337	-0.2345					29	13	3	0	0	0	0.024313	1	7468	7468		51.193	8.3284	1	520060			47736	11160	33123	33175	53131	53131					0.09974923719619255
LSFRVVATI	9	Unmodified	_LSFRVVATI_					0	0	0		ENST00000216297.6_1_14:21837363-21837492:-|nuORF	ENST00000216297.6_1_14:21837363-21837492:-|nuORF	ENST00000216297.6_1_14:21837363-21837492:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7612609863281	2	503.30821	1004.60187	-1.4225	-0.00071597	0.63237	0.00031828	-0.79017	-0.0003977	503.3084084813379	65.248	0.78013	65.045	64.818	65.598	-0.20254					37	18	3	0	0	0	0.024389	1	7442	7442		42.864	0	1	557410			47737	11160	33123	33175	53132	53132					0.09974923719619255
LSFSADSSAKA	11	Unmodified	_LSFSADSSAKA_					0	0	0		ENST00000586152.1_1_16:4926958-4927603:+|nuORF;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	ENST00000586152.1_1_16:4926958-4927603:+|nuORF	ENST00000586152.1_1_16:4926958-4927603:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.2713012695312	2	542.269478	1082.5244	2.1816	0.001183	1.9801	0.0010737	4.1617	0.0022567	542.2705246569528	18.465	1.1433	18.223	17.924	19.068	-0.24256					60	22	4	0	0	0	1.0238	1	281	281		31.53	6.0796	1	122730			47738	3708	33124	33176	53133	53133					-0.013557590072423409
LSFSASFSPE	10	Unmodified	_LSFSASFSPE_					0	0	0		ENST00000420777.1_1_6:10415663-10415858:+|nuORF	ENST00000420777.1_1_6:10415663-10415858:+|nuORF	ENST00000420777.1_1_6:10415663-10415858:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.6962280273438	2	536.253297	1070.49204	-1.307	-0.00070089	-2.1376	-0.0011463	-3.4446	-0.0018472	536.2522229486052	43.529	1.0073	43.529	43.113	44.12	0					44	27	2	0	0	0	0.03519	1	4153	4153		40.778	12.896	1	343890			47739	13982	33125	33177	53134	53134					-0.04038546410242816
LSFSGKLHP	9	Unmodified	_LSFSGKLHP_					0	0	0		ENST00000454552.5_3_22:30824720-30824849:+|nuORF	ENST00000454552.5_3_22:30824720-30824849:+|nuORF	ENST00000454552.5_3_22:30824720-30824849:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2784423828125	2	493.276909	984.539266	0.33075	0.00016315	3.2811	0.0016185	3.6118	0.0017816	493.27830612963976	20.227	1.4766	20.004	19.68	21.157	-0.22344					53	29	4	0	0	0	0.75397	1	503	503		42.396	1.8235	1	606110			47740	14565	33126	33178	53135	53135					0.04637777651419128
LSFSHLSIS	9	Unmodified	_LSFSHLSIS_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.28692626953125	2	495.766374	989.518196	0.63589	0.00031525	0.031179	1.5458E-05	0.66707	0.00033071	495.76610165527967	67.839	0.40919	67.584	67.412	67.821	-0.25517					13	9	2	0	0	0	0.024323	1	7797	7797		53.351	7.3995	1	75070	+		47741	23169	33127	33179	53136	53136					0.023017675519099612
LSFSLRLAGT	10	Unmodified	_LSFSLRLAGT_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.3082885742188	2	532.808574	1063.60259	0.47364	0.00025236	1.2135	0.00064657	1.6871	0.00089893	532.808854512292	71.179	1.5589	70.89	70.459	72.018	-0.28858					122	39	6	0	0	0	1.0074	1	8548	8548		45.022	0.64502	1	3231400			47742	2747	33128	33180	53137	53137					0.07333718368636255
LSFSPSFFST	10	Unmodified	_LSFSPSFFST_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.267822265625	2	560.27149	1118.52843	0.54137	0.00030332	-3.5889	-0.0020108	-3.0475	-0.0017074	560.2692471487917	70.38	0.89604	70.38	70.209	71.105	0					53	21	3	0	0	0	0.77808	2	8501	8501;8511		62.107	8.756	1	1453500	+		47743	26200	33129	33181	53138;53139	53138					-0.026096695135038317
LSFSPSFFST	10	Unmodified	_LSFSPSFFST_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.269287109375	2	560.27149	1118.52843	0.62199	0.00034848	-3.4805	-0.00195	-2.8585	-0.0016015	560.2692633285089	70.748	0.98943	70.455	70.2	71.189	-0.29291					55	25	3	0	0	0	0.74632	1	8517	8517		64.207	7.4862	1	1547200	+		47744	26200	33129	33181	53140	53140					-0.026096695135038317
LSFSPSFFST	10	Unmodified	_LSFSPSFFST_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	560.27149	1118.52843	0.54137	0.00030332	-3.5889	-0.0020108	-3.0475	-0.0017074	560.2692471487917	70.38	0.89604	70.38	70.209	71.105	0	-0.067284	-0.00037844	NaN	64.207	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1453500	+		47745	26200	33129	33181							-0.026096695135038317
LSFTSGILN	9	Unmodified	_LSFTSGILN_					0	0	0		TBC1D22A-GCAT|2|fusion;nc|ENSG00000100116|O75600-2|GCAT	TBC1D22A-GCAT|2|fusion	TBC1D22A-GCAT|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.30743408203125	2	476.260925	950.507297	-0.30404	-0.0001448	1.8508	0.00088145	1.5467	0.00073665	476.2619341350459	43.153	1.1739	42.916	42	43.174	-0.23736					41	30	3	0	0	0	0.024405	1	3888	3888		20.947	0	1	448150			47746	38059	33130	33182	53141	53141					0.03006365177623138
LSFTVHQK	8	Unmodified	_LSFTVHQK_					0	0	0		ENST00000463016.1_1_6:110953360-110991653:-|nuORF	ENST00000463016.1_1_6:110953360-110991653:-|nuORF	ENST00000463016.1_1_6:110953360-110991653:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2893981933594	2	480.269084	958.523616	-0.043618	-2.0948E-05	0.48606	0.00023344	0.44244	0.00021249	480.2692091284592	65.638	0.77671	65.675	65.389	66.166	0.037384					37	20	2	0	0	0	0.027866	1	7767	7767		65.803	12.452	1	1841900			47747	14728	33131	33183	53142	53142					0.042694911343687636
LSFTVTLEN	9	Unmodified	_LSFTVTLEN_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;ENST00000582319.5_1_17:72462842-72477477:+|nuORF;ENSG00000167850|ENST00000330793|CD300C	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2711791992188	2	512.27149	1022.52843	-0.053609	-2.7462E-05	-1.1778	-0.00060337	-1.2314	-0.00063083	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	0.87448	1	13344	13344		34.173	0	1	4944800			47748	7743	33132	33184	53143	53143					0.01806330486465413
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2927856445312	2	526.292756	1050.57096	-0.4121	-0.00021689	1.0345	0.00054446	0.62242	0.00032757	526.2925456318785	62.36	1.2401	62.146	61.083	62.323	-0.21375					88	30	4	0	0	0	0.042502	1	6996	6996		131.62	16.122	1	7029600			47749	7309	33133	33185	53144	53144					0.04769725614710296
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2922973632812	2	526.292756	1050.57096	-0.29996	-0.00015787	0.94597	0.00049786	0.64601	0.00033999	526.2925433963804	62.436	1.2789	62.178	61.132	62.411	-0.25824					87	31	4	0	0	0	0.016249	1	6995	6995		155.58	40.126	1	6311700			47750	7309	33133	33185	53145	53145					0.04769725614710296
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.292756	1050.57096	-1.1752	-0.00061848	7.3428	0.0038645	6.1677	0.003246	526.296374598911	61.76	0.78294	61.76	61.334	62.117	0	-0.22174	0.0019787	NaN	155.58	59	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317590			47751	7309	33133	33185							0.04769725614710296
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.292756	1050.57096	-0.42306	-0.00022265	6.6866	0.0035191	6.2636	0.0032965	526.296122537884	62.051	0.96651	61.824	61.153	62.119	-0.22663	-0.1575	0.001288	NaN	155.58	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424710			47752	7309	33133	33185							0.04769725614710296
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.292756	1050.57096	-0.41531	-0.00021857	6.0328	0.003175	5.6175	0.0029564	526.2959208218746	61.824	0.6219	61.887	61.466	62.087	0.062767	-0.094693	0.00059977	NaN	155.58	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415260			47753	7309	33133	33185							0.04769725614710296
LSFVDTRTLL	10	Unmodified	_LSFVDTRTLL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.833984375	2	582.834788	1163.65502	-0.0014146	-8.2447E-07	-0.46361	-0.00027021	-0.46503	-0.00027103	582.8344255499529	75.082	1.0609	74.806	74.519	75.579	-0.27573					62	25	4	0	0	0	0.37307	3	8854	8843;8854;8866		101.46	18.709	1	2080700			47754	7309	33134	33186	53146;53147;53148	53147					0.07974256711622729
LSFVDTRTLL	10	Unmodified	_LSFVDTRTLL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.8336791992188	2	582.834788	1163.65502	-0.86533	-0.00050435	0.5498	0.00032044	-0.31554	-0.00018391	582.8350238982512	75.059	0.90402	74.796	74.489	75.393	-0.26326					55	21	4	0	0	0	0.29525	2	8859	8859;8870		109.44	32.665	1	2364400			47755	7309	33134	33186	53149;53150	53149					0.07974256711622729
LSFVDTRTLL	10	Unmodified	_LSFVDTRTLL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.8342895507812	2	582.834788	1163.65502	-0.13088	-7.628E-05	-0.29781	-0.00017357	-0.42869	-0.00024985	582.8345282702907	74.885	0.91173	74.702	74.393	75.305	-0.18279					62	21	5	0	0	0	0.39693	2	8832	8820;8832		99.013	32.584	1	1974300			47756	7309	33134	33186	53151;53152	53152					0.07974256711622729
LSFVLLAAAI	10	Unmodified	_LSFVLLAAAI_					0	0	0		ENSG00000232258|ENST00000620492|TMEM114	ENSG00000232258|ENST00000620492|TMEM114	ENSG00000232258|ENST00000620492|TMEM114	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3249206542969	2	509.320786	1016.62702	0.35018	0.00017835	3.5273	0.0017965	3.8774	0.0019749	509.3229459371607	78.47	1.5745	78.278	78.016	79.59	-0.1921					75	37	4	0	0	0	0.55296	1	9736	9736		82.305	26.801	1	3633100			47757	10706	33135	33187	53153	53153					0.11936978522169284
LSFVVHVI	8	Unmodified	_LSFVVHVI_					0	0	0			REV__CCR4|p.A142V|1|0.24|ENSG00000183813|chr3:32953847-32953847|C/T|missense_variant	REV__CCR4|p.A142V|1|0.24|ENSG00000183813|chr3:32953847-32953847|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7682800292969	2	457.278921	912.543289	0.014375	6.5736E-06	-4.4697	-0.0020439	-4.4553	-0.0020373	457.276765540425	36.755	0.69547	36.691	36.432	37.127	-0.063385					38	17	3	0	0	0	0.027866	1	2939	2939		20.482	6.7065	1	1069800	+		47758	19266	33136	33188	53154	53154					0.08351867145142933
LSFYSPADPGL	11	Unmodified	_LSFYSPADPGL_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	583.24853515625	2	583.790047	1165.56554	-0.15514	-9.0571E-05	2.7616	0.0016122	2.6064	0.0015216	583.791605017233	80.13	1.3718	80.151	79.478	80.85	0.021446					52	32	2	0	0	0	0.024803	1	9875	9875		52.937	13.684	1	140320	+		47759	29234	33137	33189	53155	53155					-0.010619979677585434
LSGAEQGDDY	10	Unmodified	_LSGAEQGDDY_					0	0	0			REV__ENSG00000089250|ENST00000317775|NOS1;REV__nc|ENSG00000089250|P29475-4|NOS1	REV__ENSG00000089250|ENST00000317775|NOS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7689819335938	2	527.719818	1053.42508	-0.69932	-0.00036904	4.2654	0.002251	3.5661	0.0018819	527.7221230147351	48.093	0.40509	47.995	47.817	48.222	-0.097553					15	10	2	0	0	0	0.03519	1	4739	4739		54.776	5.3348	1	112260	+		47760	20851;36499	33138	33190	53156	53156					-0.09949201691983944
LSGAGKAIGVL	11	Unmodified	_LSGAGKAIGVL_					0	0	0		ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.28729248046875	2	493.305667	984.596781	-0.015098	-7.4481E-06	1.1277	0.0005563	1.1126	0.00054885	493.30631283353176	22.267	0.14277	22.078	21.959	22.102	-0.18894					4	2	2	0	0	0	0.024756	1	772	772		36.447	15.5	1	20195			47761	1350	33139	33191	53157	53157					0.10386619857001733
LSGASLPLQV	10	Unmodified	_LSGASLPLQV_					0	0	0		ENST00000470890.1_1_1:27683440-27683647:-|nuORF	ENST00000470890.1_1_1:27683440-27683647:-|nuORF	ENST00000470890.1_1_1:27683440-27683647:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	492.7912292480469	2	492.78985	983.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.49	1	106.49	105.99	106.99	-0.0013123								0	0	0	0.5321	1	13634	13634		66.429	0	1				47762	14944	33140	33192	53158	53158					0.07270627103059724
LSGATHFSQS	10	Unmodified	_LSGATHFSQS_					0	0	0			REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.780517578125	2	517.748713	1033.48287	-0.69593	-0.00036032	1.0001	0.00051781	0.30418	0.00015749	517.7488263189578	44.698	0.72747	44.735	44.375	45.103	0.0369					63	20	4	0	0	0	0.03519	1	4202	4202		19.997	0	1	1351000	+		47763	23047	33141	33193	53159	53159					-0.03252894975912568
LSGATTHKL	9	Unmodified	_LSGATTHKL_					0	0	0		S1PR1|p.Y110H|1|0.29|ENSG00000170989|chr1:101239312-101239312|T/C|missense_variant	S1PR1|p.Y110H|1|0.29|ENSG00000170989|chr1:101239312-101239312|T/C|missense_variant	S1PR1|p.Y110H|1|0.29|ENSG00000170989|chr1:101239312-101239312|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2669982910156	2	464.266542	926.51853	0.058634	2.7222E-05	-0.6165	-0.00028622	-0.55786	-0.000259	464.2664997711173	42.874	1.9695	42.735	41.746	43.715	-0.13929					102	55	5	0	0	0	0.72875	1	3957	3957		44.117	0	1	3686000			47764	37849	33142	33194	53160	53160					0.052331872717559236
LSGAWVLTP	9	Unmodified	_LSGAWVLTP_					0	0	0		ENST00000477793.2_1_19:38827807-38827864:+|nuORF	ENST00000477793.2_1_19:38827807-38827864:+|nuORF	ENST00000477793.2_1_19:38827807-38827864:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.787109375	2	472.26601	942.517468	-0.43034	-0.00020323	4.4181	0.0020865	3.9877	0.0018833	472.26827396854316	83.838	0.64821	83.747	83.469	84.117	-0.090454					25	14	2	0	0	0	0.024381	1	10419	10419		55.504	13.03	1	213300			47765	15117	33143	33195	53161	53161					0.04390972902831436
LSGCYTMVSV	10	Unmodified	_LSGCYTMVSV_					0	0	0		ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.3270874023438	2	530.246103	1058.47765	-0.0075218	-3.9884E-06	-1.444	-0.00076567	-1.4515	-0.00076966	530.2443147074122	74.707	1.1059	74.448	74.071	75.177	-0.25887					69	26	5	0	0	0	0.03519	1	9121	9121		40.778	15.328	1	608220			47766	8973	33144	33196	53162	53162					-0.049246581543911816
LSGDDSCLER	10	Unmodified	_LSGDDSCLER_					0	0	0			REV__ENST00000380122.9_2_X:16860088-16860244:+|nuORF	REV__ENST00000380122.9_2_X:16860088-16860244:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.811279296875	2	547.74277	1093.47099	-1.665	-0.00091201	-1.1527	-0.0006314	-2.8178	-0.0015434	547.7421488487257	46.344	0.52686	46.192	45.954	46.481	-0.15156					21	14	2	0	0	0	0.03519	1	4604	4604		36.447	4.4919	1	193220	+		47767	31464	33145	33197	53163	53163					-0.07200879781407821
LSGEGDVNIL	10	Unmodified	_LSGEGDVNIL_					0	0	0		ENST00000558270.1_1_15:41272423-41275357:-|nuORF	ENST00000558270.1_1_15:41272423-41275357:-|nuORF	ENST00000558270.1_1_15:41272423-41275357:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.30029296875	2	508.766571	1015.51859	-0.93698	-0.0004767	-1.5651	-0.00079626	-2.5021	-0.001273	508.76563849881796	48.572	2.5683	48.296	46.794	49.362	-0.27598					140	69	3	0	0	0	0.03519	1	4649	4649		37.812	17.815	1	881350			47768	16747	33146	33198	53164	53164					0.011451424810957178
LSGGQGGFGV	10	Unmodified	_LSGGQGGFGV_					0	0	0			REV__ENST00000249373.7_1_7:128852402-128852711:+|nuORF	REV__ENST00000249373.7_1_7:128852402-128852711:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.7216796875	2	439.721967	877.429381	0.16516	7.2623E-05	-1.4854	-0.00065318	-1.3203	-0.00058056	439.7212786424704	101.7	1.0018	101.57	101.19	102.19	-0.12576					40	24	3	0	0	0	1.0541	1	12655	12655		38.806	1.647	1	253570	+		47769	29489	33147	33199	53165	53165					-0.014236476877499626
LSGGRTVVDAL	11	Unmodified	_LSGGRTVVDAL_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3088989257812	2	544.308938	1086.60332	-0.52627	-0.00028645	3.2394	0.0017633	2.7132	0.0014768	544.3105673891156	68.863	0.81985	68.632	68.357	69.177	-0.23048					39	19	3	0	0	0	0.95664	1	7974	7974		46.457	5.0302	1	1702500			47770	6024	33148	33200	53166	53166					0.0634851301767867
LSGGVAMPGHC	11	Carbamidomethyl (C)	_LSGGVAMPGHC(Carbamidomethyl (C))_	LSGGVAMPGHC(1)		LSGGVAMPGHC(66)		0	1	0		ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.2462768554688	2	543.246969	1084.47938	-0.63139	-0.000343	-1.109	-0.00060245	-1.7404	-0.00094545	543.2462275363179	61.457	0.60836	61.528	61.276	61.884	0.071129					35	15	4	0	0	0	0.6558	1	7038	7038		66.429	9.7082	1	1184400			47771	17399	33149	33201	53167	53167	232				-0.05947604345783475
LSGGVAMPGHC	11	Carbamidomethyl (C)	_LSGGVAMPGHC(Carbamidomethyl (C))_					0	1	0		ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.246969	1084.47938	-0.49993	-0.00027159	-1.2162	-0.00066071	-1.7162	-0.00093229	543.2462292190066	61.512	0.61565	61.512	61.216	61.832	0	-0.004042	-5.8503E-06	NaN	66.429	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1211000			47772	17399	33149	33201			232				-0.05947604345783475
LSGGVAMPGHC	11	Carbamidomethyl (C)	_LSGGVAMPGHC(Carbamidomethyl (C))_					0	1	0		ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.246969	1084.47938	-0.24078	-0.0001308	-1.4213	-0.00077213	-1.6621	-0.00090294	543.2460455144958	61.736	0.68104	61.509	61.298	61.979	-0.22663	-0.007189	-0.0002287	NaN	66.429	37	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1156800			47773	17399	33149	33201			232				-0.05947604345783475
LSGGWEGHLL	10	Unmodified	_LSGGWEGHLL_					0	0	0		ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7507934570312	2	534.777274	1067.53999	-1.3786	-0.00073724	0.9237	0.00049397	-0.4549	-0.00024327	534.7775014484591	40.324	0.49745	40.094	39.811	40.308	-0.23021					38	12	4	0	0	0	0.03519	1	3431	3431		34.173	0	1	1112700			47774	14440	33150	33202	53168	53168					0.00892572300494976
LSGKLDIVCT	10	Unmodified	_LSGKLDIVCT_					0	0	0		CCNB1IP1|p.R63C|1|0.28|ENSG00000100814|chr14:20316337-20316337|G/A|missense_variant	CCNB1IP1|p.R63C|1|0.28|ENSG00000100814|chr14:20316337-20316337|G/A|missense_variant	CCNB1IP1|p.R63C|1|0.28|ENSG00000100814|chr14:20316337-20316337|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7772216796875	2	524.788992	1047.56343	-0.049885	-2.6179E-05	0.061763	3.2412E-05	0.011878	6.2334E-06	524.7889007219335	50.366	1.9368	50.447	49.359	51.296	0.08099					76	54	3	0	0	0	0.03519	1	5026	5026		30.318	13.845	1	289580			47775	228	33151	33203	53169	53169					0.04155250022790824
LSGKNPNTVIV	11	Unmodified	_LSGKNPNTVIV_					0	0	0		nc|ENSG00000149179|Q9H6J7-3|CSTPP1;ENST00000525895.5_1_11:46958334-47183186:+|nuORF;nc|ENSG00000149179|Q9H6J7-4|CSTPP1;ENSG00000149179|ENST00000278460|CSTPP1;nc|ENSG00000149179|Q9H6J7-2|CSTPP1	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.2738037109375	2	571.332413	1140.65027	0.43725	0.00024981	1.0858	0.00062037	1.5231	0.00087018	571.3327372026579	56.708	0.3144	56.483	56.386	56.7	-0.2248					10	7	2	0	0	0	0.024759	1	6159	6159		26.063	11.926	1	164280			47776	6069	33152	33204	53170	53170					0.08557372568839128
LSGLAALKL	9	Unmodified	_LSGLAALKL_					0	0	0			REV__ENSG00000181744|ENST00000315691|DIPK2A	REV__ENSG00000181744|ENST00000315691|DIPK2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.27984619140625	2	443.292028	884.569503	0.036054	1.5982E-05	-0.16131	-7.1505E-05	-0.12525	-5.5523E-05	443.292100960178	55.062	0.1798	54.911	54.82	55	-0.15036					8	4	2	0	0	0	0.022756	1	6037	6037		90.777	8.4716	1	200750	+		47777	27420	33153	33205	53171	53171					0.12260136316592707
LSGLAKVK	8	Unmodified	_LSGLAKVK_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-2|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.5354309082031	2	408.271096	814.527639	-1.2359	-0.00050459	-0.87012	-0.00035525	-2.106	-0.00085983	408.2698953228235	21.211	0.73381	20.998	20.773	21.506	-0.2128					25	14	3	0	0	0	0.027866	1	672	672		6.7355	0	1	88838			47778	18506	33154	33206	53172	53172					0.11295580628086554
LSGLEPGAR	9	Unmodified	_LSGLEPGAR_					0	0	0			REV__ENST00000526183.5_1_8:145723359-145723767:+|nuORF	REV__ENST00000526183.5_1_8:145723359-145723767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2319030761719	2	450.250892	898.48723	-0.72378	-0.00032588	0.91892	0.00041374	0.19513	8.786E-05	450.25120969208723	36.32	0.77208	36.278	35.797	36.569	-0.042458					29	21	2	0	0	0	0.024405	1	2783	2783		20.947	0	1	176680	+		47779	34437	33155	33207	53173	53173					0.033926142376685675
LSGLEPGAR	9	Unmodified	_LSGLEPGAR_					0	0	0			REV__ENST00000526183.5_1_8:145723359-145723767:+|nuORF	REV__ENST00000526183.5_1_8:145723359-145723767:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.250892	898.48723	-0.39885	-0.00017958	0.66187	0.00029801	0.26302	0.00011842	450.25112142334194	36.475	0.69423	36.475	36.029	36.724	0	0.18387	-7.0224E-05	NaN	18.262	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134490	+		47780	34437	33155	33207							0.033926142376685675
LSGLEPGAR	9	Unmodified	_LSGLEPGAR_					0	0	0			REV__ENST00000526183.5_1_8:145723359-145723767:+|nuORF	REV__ENST00000526183.5_1_8:145723359-145723767:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.250892	898.48723	0.11619	5.2316E-05	-1.3469	-0.00060643	-1.2307	-0.00055411	450.25030880563077	36.549	0.47518	36.344	36.091	36.566	-0.20518	0.052874	-0.0018791	NaN	18.262	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68727	+		47781	34437	33155	33207							0.033926142376685675
LSGLFLINVN	10	Unmodified	_LSGLFLINVN_					0	0	0			REV__ENST00000467067.1_1_1:8074863-8075025:-|nuORF	REV__ENST00000467067.1_1_1:8074863-8075025:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165893554688	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0236	2	11270	11270;11402		42.864	3.6114	1	11705000	+		47782	33061	33156	33208	53174;53175	53174					0.08222889028479585
LSGLFLINVN	10	Unmodified	_LSGLFLINVN_					0	0	0			REV__ENST00000467067.1_1_1:8074863-8075025:-|nuORF	REV__ENST00000467067.1_1_1:8074863-8075025:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167724609375	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.1266	1	10755	10755		29.17	0.020503	1	4936700	+		47783	33061	33156	33208	53176	53176					0.08222889028479585
LSGLGLMGIK	10	Unmodified	_LSGLGLMGIK_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2535705566406	2	494.79662	987.578688	-0.17988	-8.9005E-05	-0.63376	-0.00031358	-0.81365	-0.00040259	494.7962996063556	56.907	0.60936	57.002	56.783	57.392	0.095306					34	16	3	0	0	0	0.03519	1	6282	6282		25.574	0	1	316470			47784	762	33157	33209	53177	53177					0.08440161610633368
LSGLKSLEL	9	Unmodified	_LSGLKSLEL_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.29217529296875	2	480.292225	958.569897	0.32561	0.00015639	-1.0658	-0.00051189	-0.74019	-0.00035551	480.29169514892175	31.667	1.1802	31.426	31.073	32.253	-0.24109					87	28	5	0	0	0	0.17822	4	2111	2111;2122;2134;2161		93.195	7.836	1	11621000			47785	8195	33158	33210	53178;53179;53180;53181	53178					0.08895511245793841
LSGLKSLEL	9	Unmodified	_LSGLKSLEL_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2919616699219	2	480.292225	958.569897	-0.25747	-0.00012366	-0.46899	-0.00022525	-0.72646	-0.00034891	480.2919784247279	31.566	1.0632	31.381	31.062	32.125	-0.18503					83	25	4	0	0	0	0.29158	1	2110	2110		76.774	5.4784	1	10630000			47786	8195	33158	33210	53182	53182					0.08895511245793841
LSGLKSLEL	9	Unmodified	_LSGLKSLEL_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2917785644531	2	480.292225	958.569897	-0.21393	-0.00010275	-0.60719	-0.00029163	-0.82112	-0.00039438	480.29189697454643	31.641	1.0486	31.489	31.161	32.21	-0.15231					82	25	5	0	0	0	0.10174	1	2104	2104		110.12	19.343	1	10654000			47787	8195	33158	33210	53183	53183					0.08895511245793841
LSGLLELP	8	Unmodified	_LSGLLELP_					0	0	0			REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.25372314453125	2	421.255111	840.49567	0.71106	0.00029954	-3.676	-0.0015485	-2.965	-0.001249	421.25343309500204	83.612	1.0668	83.4	83.049	84.116	-0.21159					57	24	3	0	0	0	1.0239	1	10085	10085		33.516	0	1	583200	+		47788	33056	33159	33211	53184	53184					0.06904168154278523
LSGLLELP	8	Unmodified	_LSGLLELP_					0	0	0			REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	421.255111	840.49567	-0.65711	-0.00027681	-2.3117	-0.00097382	-2.9688	-0.0012506	421.25400509908565	83.365	1.0767	83.365	83.051	84.128	0	-0.071405	0.00050996	NaN	33.516	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763990	+		47789	33056	33159	33211							0.06904168154278523
LSGLLELP	8	Unmodified	_LSGLLELP_					0	0	0			REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	REV__ENST00000467008.5_1_6:16739721-16739877:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	421.255111	840.49567	-0.56995	-0.00024009	-2.2489	-0.00094734	-2.8188	-0.0011874	421.2540018367905	83.405	1.0745	83.431	83.088	84.162	0.026558	-0.0050014	0.00056292	NaN	33.516	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	725870	+		47790	33056	33159	33211							0.06904168154278523
LSGLPISAAPE	11	Unmodified	_LSGLPISAAPE_					0	0	0			REV__ENSG00000221955|ENST00000469902|SLC12A8	REV__ENSG00000221955|ENST00000469902|SLC12A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7703857421875	2	527.792589	1053.57063	-0.92947	-0.00049057	0.89201	0.0004708	-0.037454	-1.9768E-05	527.7924057267035	48.169	0.48503	47.893	47.595	48.08	-0.27598					16	12	2	0	0	0	0.02479	1	4750	4750		51.193	1.1682	1	120230	+		47791	28842	33160	33212	53185	53185					0.045983058948422695
LSGNWYVF	8	Unmodified	_LSGNWYVF_					0	0	0		ENST00000526094.5_1_17:42295651-42295777:-|nuORF	ENST00000526094.5_1_17:42295651-42295777:-|nuORF	ENST00000526094.5_1_17:42295651-42295777:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.28729248046875	2	493.242535	984.470518	-0.0065057	-3.2089E-06	-0.80062	-0.0003949	-0.80712	-0.00039811	493.2421679011493	22.068	0.42545	21.88	21.676	22.102	-0.18894					12	8	2	0	0	0	0.027866	1	772	772		26.796	1.3459	1	23486			47792	16110	33161	33213	53186	53186					-0.02233886648286898
LSGPFVQKW	9	Unmodified	_LSGPFVQKW_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.29296875	2	531.292559	1060.57057	-0.28321	-0.00015047	0.31317	0.00016638	0.029957	1.5916E-05	531.2925598389894	61.834	1.0851	61.62	61.083	62.168	-0.21375					79	26	4	0	0	0	0.01452	4	6951	6913;6925;6939;6951		186.09	61.495	1	3591700			47793	6720	33162	33214	53187;53188;53189;53190	53190					0.042703506855104933
LSGPFVQKW	9	Unmodified	_LSGPFVQKW_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2924194335938	2	531.292559	1060.57057	-1.3141	-0.00069817	1.1416	0.00060653	-0.17248	-9.1636E-05	531.2930853083269	61.709	1.1549	61.531	61.036	62.191	-0.17782					86	28	5	0	0	0	0.021872	4	6931	6905;6917;6931;6944		148.04	42.463	1	3644900			47794	6720	33162	33214	53191;53192;53193;53194	53193					0.042703506855104933
LSGPFVQKW	9	Unmodified	_LSGPFVQKW_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2925415039062	2	531.292559	1060.57057	-0.23178	-0.00012314	0.020333	1.0803E-05	-0.21145	-0.00011234	531.2924136920501	61.888	1.1249	61.631	61.049	62.174	-0.25725					87	27	4	0	0	0	0.014988	4	6938	6911;6924;6938;6951		161.9	45.672	1	3715100			47795	6720	33162	33214	53195;53196;53197;53198	53197					0.042703506855104933
LSGPFVQKW	9	Unmodified	_LSGPFVQKW_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.292559	1060.57057	-0.7113	-0.00037791	4.4432	0.0023606	3.7319	0.0019827	531.2933107264039	61.796	0.17844	61.858	61.698	61.876	0.062767	0.19833	0.0037497	NaN	186.09	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72265			47796	6720	33162	33214							0.042703506855104933
LSGPGRRG	8	Unmodified	_LSGPGRRG_					0	0	0		ENSG00000114735|ENST00000232854|HEMK1;ENST00000482974.1_1_3:50608553-50608853:+|nuORF	ENSG00000114735|ENST00000232854|HEMK1	ENSG00000114735|ENST00000232854|HEMK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.2471923828125	2	400.230294	798.446034	3.263	0.0013059	-4.1174	-0.0016479	-0.85444	-0.00034197	400.2277462670335	33.137	0.77737	33.193	32.8	33.577	0.056568					44	20	4	0	0	0	0.027866	1	2269	2269		25.45	0	1	123110			47797	3377	33163	33215	53199	53199					0.038748979888509893
LSGPGRRG	8	Unmodified	_LSGPGRRG_					0	0	0		ENSG00000114735|ENST00000232854|HEMK1;ENST00000482974.1_1_3:50608553-50608853:+|nuORF	ENSG00000114735|ENST00000232854|HEMK1	ENSG00000114735|ENST00000232854|HEMK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	400.230294	798.446034	0.75167	0.00030084	-8.5659	-0.0034283	-7.8142	-0.0031275	400.22416112702183	33.359	0.53002	33.359	33.096	33.626	0	0.07923	-0.003291	NaN	24.203	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132950			47798	3377	33163	33215							0.038748979888509893
LSGPGRRG	8	Unmodified	_LSGPGRRG_					0	0	0		ENSG00000114735|ENST00000232854|HEMK1;ENST00000482974.1_1_3:50608553-50608853:+|nuORF	ENSG00000114735|ENST00000232854|HEMK1	ENSG00000114735|ENST00000232854|HEMK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	400.230294	798.446034	-0.095186	-3.8096E-05	-3.9019	-0.0015616	-3.997	-0.0015997	400.22844918041466	33.28	0.52894	33.286	33.043	33.572	0.0066261	0.0069654	0.00044235	NaN	24.203	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156160			47799	3377	33163	33215							0.038748979888509893
LSGPTPLAGPL	11	Unmodified	_LSGPTPLAGPL_					0	0	0			REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.795166015625	2	511.797675	1021.5808	-1.0095	-0.00051665	0.19581	0.00010022	-0.81366	-0.00041643	511.7975081658998	38.161	0.48115	38.079	37.813	38.294	-0.082516					21	13	2	0	0	0	0.024768	1	3159	3159		47.657	5.1829	1	348080	+		47800	33736	33164	33216	53200	53200					0.07086913620105406
LSGPTPLAGPL	11	Unmodified	_LSGPTPLAGPL_					0	0	0			REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	REV__ENST00000492256.1_1_1:12088992-12089454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7890625	2	511.797675	1021.5808	-1.9706	-0.0010086	2.0403	0.0010442	0.069676	3.566E-05	511.7982388197028	38.342	0.56475	38.37	38.127	38.691	0.027275					24	15	2	0	0	0	0.024768	1	3158	3158		47.657	0	1	490020	+		47801	33736	33164	33216	53201	53201					0.07086913620105406
LSGQLAGLPTI	11	Unmodified	_LSGQLAGLPTI_					0	0	0		ENST00000445273.6_1_13:31736400-31736493:-|nuORF	ENST00000445273.6_1_13:31736400-31736493:-|nuORF	ENST00000445273.6_1_13:31736400-31736493:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7565307617188	2	535.316232	1068.61791	-0.5189	-0.00027778	0.63251	0.00033859	0.11361	6.0815E-05	535.3164719848714	75.962	1.4152	75.703	75.319	76.734	-0.25866					70	34	4	0	0	0	0.024771	1	9096	9096		48.602	24.399	1	1084500			47802	14438	33165	33217	53202	53202					0.08634585165850694
LSGRFGDL	8	Unmodified	_LSGRFGDL_					0	0	0		ENST00000374884.2_2_X:62570875-62571106:-|nuORF	ENST00000374884.2_2_X:62570875-62571106:-|nuORF	ENST00000374884.2_2_X:62570875-62571106:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.73187255859375	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	0.95679	1	12308	12308		44.117	5.3107	1	1517800			47803	13140	33166	33218	53203	53203					0.012929426919072284
LSGRRRPLL	9	Unmodified	_LSGRRRPLL_					0	0	0		nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-3|STYXL1	nc|ENSG00000127952|Q9Y6J8-3|STYXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.794677734375	2	534.343449	1066.67235	-0.71997	-0.00038471	2.4136	0.0012897	1.6937	0.00090499	534.3445493663323	91.131	0.57753	91.118	90.785	91.363	-0.012383					27	13	3	0	0	0	0.024541	1	11514	11514		17.365	0	1	285360			47804	18253	33167	33219	53204	53204					0.14167641827953048
LSGRTRVP	8	Unmodified	_LSGRTRVP_					0	0	0			REV__ENST00000311661.4_2_17:77020401-77042770:+|nuORF	REV__ENST00000311661.4_2_17:77020401-77042770:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.26690673828125	2	443.266876	884.519199	0.58884	0.00026101	-0.44474	-0.00019714	0.14409	6.3871E-05	443.26659446344723	85.917	1.0344	85.78	85.452	86.487	-0.13734					64	23	4	0	0	0	1.0106	1	10396	10396		35.618	1.4457	1	878650	+		47805	30212	33168	33220	53205	53205					0.07232026711460549
LSGSLYRF	8	Unmodified	_LSGSLYRF_					0	0	0		ENST00000609170.1_1_10:88726898-88727267:-|nuORF	ENST00000609170.1_1_10:88726898-88727267:-|nuORF	ENST00000609170.1_1_10:88726898-88727267:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2933044433594	2	471.75581	941.497067	0.53242	0.00025117	0.67082	0.00031646	1.2032	0.00056764	471.7556069557657	52.829	0.41272	52.921	52.638	53.05	0.091938					17	10	2	0	0	0	0.027866	1	5593	5593		31.955	0	1	187220			47806	17602	33169	33221	53206	53206					0.023978022430469537
LSGSRFSK	8	Unmodified	_LSGSRFSK_					0	0	0			REV__ENSG00000125245|ENST00000397470|GPR18	REV__ENSG00000125245|ENST00000397470|GPR18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2354736328125	2	441.245609	880.476666	-0.048588	-2.1439E-05	0.44184	0.00019496	0.39325	0.00017352	441.2457127253201	33.844	0.73982	33.839	33.412	34.152	-0.0045624					30	18	2	0	0	0	0.027866	1	2445	2445		49.442	7.0454	1	348160	+		47807	22802	33170	33222	53207	53207					0.03164631583240407
LSGSRFSK	8	Unmodified	_LSGSRFSK_					0	0	0			REV__ENSG00000125245|ENST00000397470|GPR18	REV__ENSG00000125245|ENST00000397470|GPR18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2357482910156	2	441.245609	880.476666	-0.0027103	-1.1959E-06	1.135	0.00050083	1.1323	0.00049963	441.2459774413843	33.822	0.75591	33.878	33.423	34.179	0.056568					30	18	2	0	0	0	0.027866	1	2396	2396		49.442	1.5259	1	306700	+		47808	22802	33170	33222	53208	53208					0.03164631583240407
LSGSTGEKQF	10	Unmodified	_LSGSTGEKQF_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7689819335938	2	527.264196	1052.51384	-1.266	-0.00066754	-0.66601	-0.00035116	-1.932	-0.0010187	527.7643831883519	48.518	0.8343	48.242	47.851	48.685	-0.27598					50	22	3	0	0	0	0.03519	1	4775	4775		40.778	7.9657	1	543290			47809	5346	33171	33223	53209	53209					-0.01031741661677188
LSGTIPVQML	10	Unmodified	_LSGTIPVQML_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7994995117188	2	529.79936	1057.58417	-1.2974	-0.00068734	1.5121	0.00080111	0.21475	0.00011377	529.8000147897122	83.414	1.6144	83.414	83.095	84.709	0					97	37	4	0	0	0	0.34774	1	10430	10430		104.06	2.8042	1	5561600			47810	8467	33172	33224	53210	53210					0.057678404024500196
LSGTIYQSIST	11	Unmodified	_LSGTIYQSIST_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3238525390625	2	585.306061	1168.59757	-1.1565	-0.0006769	1.8655	0.0010919	0.70902	0.000415	585.8083528360324	44.591	0.50501	44.487	44.239	44.744	-0.10468					16	12	2	0	0	0	0.024643	1	4183	4183		56.434	23.621	1	163990	+		47811	23834	33173	33225	53211	53211					0.020013697153899557
LSGTTQQLLA	10	Unmodified	_LSGTTQQLLA_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2699584960938	2	516.290214	1030.56587	-0.37219	-0.00019216	-0.2147	-0.00011085	-0.58689	-0.00030301	516.28994906738	28.169	0.6797	28.017	27.847	28.527	-0.15195					34	16	4	0	0	0	0.03519	1	1611	1611		65.465	0	1	818720	+		47812	23325	33174	33226	53212	53212					0.05181421752104143
LSGTYYALY	9	Unmodified	_LSGTYYALY_					0	0	0		ENSG00000177042|ENST00000397510|TMEM80;nc|ENSG00000177042|Q96HE8-2|TMEM80;ENST00000492023.1_1_11:700162-703983:+|nuORF	ENSG00000177042|ENST00000397510|TMEM80	ENSG00000177042|ENST00000397510|TMEM80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7586059570312	2	525.760758	1049.50696	0.15925	8.3726E-05	-4.2267	-0.0022223	-4.0675	-0.0021385	525.7585219736187	57.182	1.3739	56.98	56.443	57.817	-0.20209					116	36	4	0	0	0	0.64155	1	6269	6269		50.025	0.81375	1	26728000			47813	8699	33175	33227	53213	53213					-0.01581054542248239
LSGVANRIAE	10	Unmodified	_LSGVANRIAE_					0	0	0			REV__nc|ENSG00000180764|A2A3N6|PIPSL	REV__nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2882690429688	2	515.288005	1028.56146	-0.55678	-0.0002869	0.027367	1.4102E-05	-0.52941	-0.0002728	515.2880152450967	40.101	1.9114	39.951	39.553	41.464	-0.1497					97	50	4	0	0	0	0.34774	1	3436	3436		104.06	5.4274	1	21703000	+		47814	33425	33176	33228	53214	53214					0.04831957329179204
LSGVLLFQT	9	Unmodified	_LSGVLLFQT_					0	0	0		ENST00000374641.3_1_9:99525398-99538412:-|nuORF;ENST00000223428.8_1_9:99522746-99538412:-|nuORF	ENST00000374641.3_1_9:99525398-99538412:-|nuORF	ENST00000374641.3_1_9:99525398-99538412:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.81207275390625	2	489.286943	976.559333	-0.96274	-0.00047106	0.16241	7.9463E-05	-0.80034	-0.00039159	489.2859911330915	25.866	0.33689	25.63	25.425	25.762	-0.23603					16	7	3	0	0	0	0.024427	1	1260	1260		14.137	0	1	47138			47815	11201	33177	33229	53215	53215					0.07011528591374372
LSGVLRVL	8	Unmodified	_LSGVLRVL_					0	0	0			REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|8|1|sense	REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|8|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.1900634765625	2	428.78437	855.554188	0.14735	6.318E-05	-0.059388	-2.5465E-05	0.087959	3.7716E-05	428.78425236450437	24.885	0.35351	24.71	24.554	24.907	-0.17484					13	7	2	0	0	0	0.027866	1	1138	1138		18.324	0	1	92409	+		47816	36369	33178	33230	53216	53216					0.12063269519410369
LSGYGQPLSP	10	Unmodified	_LSGYGQPLSP_					0	0	0		ENST00000306077.4_1_3:14183553-14183841:+|nuORF	ENST00000306077.4_1_3:14183553-14183841:+|nuORF	ENST00000306077.4_1_3:14183553-14183841:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.234130859375	2	509.763832	1017.51311	-0.034109	-1.7387E-05	-2.6708	-0.0013615	-2.7049	-0.0013788	509.762694618524	104.91	0.41737	104.91	104.7	105.12	-0.0016022					18	14	2	0	0	0	0.03519	1	13391	13391		31.53	7.0106	1	56115			47817	11997	33179	33231	53217	53217					0.0050546368928507945
LSGYSIVTQI	10	Unmodified	_LSGYSIVTQI_					0	0	0		ENST00000583544.1_1_17:72700560-72709059:-|nuORF;nc|ENSG00000186074|Q8TDQ1-5|CD300LF;ENSG00000186074|ENST00000326165|CD300LF	ENST00000583544.1_1_17:72700560-72709059:-|nuORF	ENST00000583544.1_1_17:72700560-72709059:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8006591796875	2	540.800414	1079.58628	-0.33796	-0.00018277	-1.4296	-0.00077311	-1.7675	-0.00095588	540.7996116327287	59.025	0.72501	59.111	58.776	59.501	0.085682					38	19	4	0	0	0	0.57594	1	6642	6642		79.713	5.4575	1	5494900			47818	9507	33180	33232	53218	53218					0.049665924119153715
LSHAINRL	8	Unmodified	_LSHAINRL_					0	0	0			REV__HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|10|3|sense	REV__HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|10|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2746276855469	2	462.274701	922.534849	0.3822	0.00017668	-0.75468	-0.00034887	-0.37249	-0.00017219	462.2742970780849	21.55	1.0015	21.373	21.065	22.066	-0.17721					57	20	4	0	0	0	0.74904	1	679	679		63.306	7.8021	1	1516700	+		47819	36112	33181	33233	53219	53219					0.07048313228528968
LSHAINRL	8	Unmodified	_LSHAINRL_					0	0	0			REV__HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|10|3|sense	REV__HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|10|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2745056152344	2	462.274701	922.534849	-0.1111	-5.1359E-05	-0.19572	-9.0475E-05	-0.30682	-0.00014183	462.2745568909641	21.682	0.91201	21.491	21.177	22.089	-0.19072					49	18	4	0	0	0	0.94517	1	700	700		45.952	0	1	1236500	+		47820	36112	33181	33233	53220	53220					0.07048313228528968
LSHALLPSD	9	Unmodified	_LSHALLPSD_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7570495605469	2	476.758549	951.502546	0.18319	8.7336E-05	-1.8072	-0.00086158	-1.624	-0.00077425	476.7578441828843	100.9	1.5982	100.73	100.57	102.17	-0.17178					70	39	2	0	0	0	0.98128	1	12519	12519		24.203	4.8428	1	184860			47821	1390	33182	33234	53221	53221					0.024854810348642786
LSHAPRLDSD	10	Unmodified	_LSHAPRLDSD_					0	0	0		ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENSG00000102225|ENST00000357227|CDK16	ENSG00000102225|ENST00000357227|CDK16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.29150390625	2	555.780544	1109.54654	-1.2108	-0.00067294	-4.2269	-0.0023492	-5.4377	-0.0030222	555.777722199883	65.583	0.86275	65.37	65.052	65.915	-0.21327					52	20	4	0	0	0	0.03519	1	7484	7484		4.6126	0	1	1920300			47822	2393	33183	33235	53222	53222					-0.003855345388274145
LSHCQNIL	8	Unmodified	_LSHCQNIL_					0	0	0		nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.31524658203125	2	464.23947	926.464386	-0.29236	-0.00013573	-3.5574	-0.0016515	-3.8498	-0.0017872	464.23769098817326	47.852	0.40968	47.754	47.557	47.966	-0.097549					23	10	3	0	0	0	0.027866	1	4691	4691		73.975	0	1	314720			47823	18795	33184	33236	53223	53223					-0.00178728151456653
LSHCQNIL	8	Unmodified	_LSHCQNIL_					0	0	0		nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.3154602050781	2	464.23947	926.464386	-0.68841	-0.00031959	-2.6359	-0.0012237	-3.3243	-0.0015433	464.23787278695534	48.157	0.48609	47.881	47.63	48.116	-0.27598					26	12	3	0	0	0	0.027866	1	4734	4734		85.359	0	1	252120			47824	18795	33184	33236	53224	53224					-0.00178728151456653
LSHCQNIL	8	Unmodified	_LSHCQNIL_					0	0	0		nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.315185546875	2	464.23947	926.464386	0.20189	9.3727E-05	-4.3116	-0.0020016	-4.1097	-0.0019079	464.2373157245454	47.983	0.4189	47.796	47.596	48.015	-0.18684					19	10	2	0	0	0	0.027866	1	4704	4704		85.359	0	1	249310			47825	18795	33184	33236	53225	53225					-0.00178728151456653
LSHELKAA	8	Unmodified	_LSHELKAA_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7378845214844	2	434.747985	867.481417	-0.19451	-8.4565E-05	1.3489	0.00058642	1.1543	0.00050185	434.7482599889112	41.271	0.46459	41.136	40.83	41.294	-0.13553					17	11	2	0	0	0	0.027866	1	3595	3595		29.15	4.6304	1	118390			47826	3849	33185	33237	53226	53226					0.0423751572599258
LSHGPRKI	8	Unmodified	_LSHGPRKI_					0	0	0		ENSG00000167094|ENST00000373289|TTC16;ENST00000489226.5_1_9:130492547-130493681:+|nuORF;ENST00000488285.1_1_9:130486913-130493681:+|nuORF	ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.26593017578125	2	454.277244	906.539935	-0.18647	-8.4711E-05	0.58751	0.00026689	0.40103	0.00018218	454.2774294091088	63.361	0.35727	63.177	62.915	63.272	-0.18386					11	8	2	0	0	0	0.027866	1	7138	7138		71.296	18.997	1	91573			47827	7646	33186	33238	53227	53227					0.08292617091126431
LSHLAESKQI	10	Unmodified	_LSHLAESKQI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.D1320H|1|0.25|ENSG00000152818|chr6:144487683-144487683|G/C|missense_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3192749023438	2	563.316763	1124.61897	-0.53172	-0.00029953	4.2818	0.002412	3.7501	0.0021125	563.3189967024028	95.758	1.3924	95.758	95.179	96.571	0					75	32	4	0	0	0	0.52982	1	12214	12214		84.916	2.165	1	1779400			47828	6301	33187	33239	53228	53228					0.06164799534758458
LSHLNNSY	8	Unmodified	_LSHLNNSY_					0	0	0		ENST00000595908.5_1_19:6732389-6735558:-|nuORF;ENSG00000125734|ENST00000264080|GPR108	ENST00000595908.5_1_19:6732389-6735558:-|nuORF	ENST00000595908.5_1_19:6732389-6735558:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.2333984375	2	474.232699	946.450845	-1.3894	-0.00065889	2.1974	0.0010421	0.80798	0.00038317	474.2336235792196	40.581	1.5369	40.351	40.007	41.544	-0.23027					61	40	2	0	0	0	0.91956	1	3505	3505		49.442	3.4896	1	4159700			47829	4132	33188	33240	53229	53229					-0.0245226265905103
LSHNKLDL	8	Unmodified	_LSHNKLDL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2665710449219	2	470.266542	938.51853	-0.43493	-0.00020453	0.13595	6.3932E-05	-0.29898	-0.0001406	470.266518762673	29.768	1.1302	29.618	29.129	30.259	-0.14952					64	26	4	0	0	0	0.2917	1	1830	1830		115.46	0	1	3055300			47830	10763	33189	33241	53230	53230					0.0468118727176261
LSHNKLVKI	9	Unmodified	_LSHNKLVKI_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.759521484375	2	526.334759	1050.65496	-0.46434	-0.0002444	-0.40135	-0.00021124	-0.86569	-0.00045564	526.3344125309749	57.488	0.43674	57.254	57.026	57.463	-0.23363					16	11	2	0	0	0	0.024447	1	6264	6264		40.778	10.275	1	187700			47831	8442	33190	33242	53231	53231					0.13166301502269562
LSHNPIEDK	9	Unmodified	_LSHNPIEDK_					0	0	0		ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.777099609375	2	526.772188	1051.52982	-0.78929	-0.00041578	-0.57824	-0.0003046	-1.3675	-0.00072037	526.7715793048033	49.603	0.56157	49.677	49.316	49.877	0.074196					29	14	3	0	0	0	0.024511	1	5038	5038		32.812	7.3622	1	1462300			47832	9568	33191	33243	53232	53232					0.006119645752505676
LSHNQLREV	9	Unmodified	_LSHNQLREV_					0	0	0		ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3109741210938	2	548.298904	1094.58326	-0.46781	-0.0002565	3.9011	0.002139	3.4333	0.0018825	548.3007589817477	64.187	0.81799	63.929	63.565	64.383	-0.25824					68	20	5	0	0	0	0.024447	1	7254	7254		25.574	0	1	1093200			47833	9155	33192	33244	53233	53233					0.039747620777461634
LSHPFHAI	8	Unmodified	_LSHPFHAI_					0	0	0			REV__TAS2R42|p.L181Cfs*5|1|0.09|ENSG00000186136|chr12:11186396-11186397|-/TGTTGTGGAAC|frameshift_variant	REV__TAS2R42|p.L181Cfs*5|1|0.09|ENSG00000186136|chr12:11186396-11186397|-/TGTTGTGGAAC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2585754394531	2	461.250695	920.486836	-1.004	-0.0004631	3.8372	0.0017699	2.8332	0.0013068	461.2523696926109	38.118	1.4185	38.118	37.836	39.254	0					48	39	2	0	0	0	0.027866	1	3122	3122		29.842	4.3914	1	2132800	+		47834	27827	33193	33245	53234	53234					0.023412393084640826
LSHQVPISF	9	Unmodified	_LSHQVPISF_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2925415039062	2	514.282192	1026.54983	-0.43339	-0.00022288	-0.22439	-0.0001154	-0.65778	-0.00033828	514.2822751644082	65.36	1.2269	65.123	64.766	65.993	-0.23657					63	29	4	0	0	0	0.024405	1	7439	7439		44.117	14.967	1	1050400			47835	9647	33194	33246	53235	53235					0.037617603058379245
LSHRVLAYL	9	Unmodified	_LSHRVLAYL_					0	0	0		ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA	ENSG00000155719|ENST00000646100|OTOA	ENSG00000155719|ENST00000646100|OTOA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.31689453125	2	536.319109	1070.62366	0.030907	1.6576E-05	1.5943	0.00085505	1.6252	0.00087162	536.3169900435802	21.036	1.2754	20.84	20.187	21.462	-0.19577					43	25	3	0	0	0	0.90698	1	612	612		31.955	1.4512	1	601840			47836	6483	33195	33247	53236	53236					0.09117728468186215
LSHTTAELNY	10	Unmodified	_LSHTTAELNY_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ENST00000490152.1_1_13:20641134-20642237:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7850341796875	2	574.782753	1147.55095	-0.23714	-0.00013631	3.1122	0.0017888	2.8751	0.0016525	574.784734892199	52.774	1.026	52.584	51.993	53.019	-0.18982					91	25	5	0	0	0	0.99657	1	5469	5469		46.457	7.7032	1	2631100			47837	3883	33196	33248	53237	53237					-0.016920701159051532
LSHVFTLW	8	Unmodified	_LSHVFTLW_					0	0	0			REV__ENSG00000007384|ENST00000262316|RHBDF1	REV__ENSG00000007384|ENST00000262316|RHBDF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.3067932128906	2	501.774003	1001.53345	0.31364	0.00015738	-0.85759	-0.00043032	-0.54395	-0.00027294	501.7733606841998	23.195	0.75108	22.993	22.687	23.438	-0.20193					35	16	3	0	0	0	0.027866	1	902	902		42.474	17.024	1	324060	+		47838	19862	33197	33249	53238	53238					0.0327467913974715
LSHVQEDDI	9	Unmodified	_LSHVQEDDI_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7378540039062	2	528.253828	1054.4931	-0.4334	-0.00022894	-0.7167	-0.0003786	-1.1501	-0.00060754	528.253050766254	53.423	0.58542	53.295	52.988	53.574	-0.12705					33	15	3	0	0	0	0.024495	1	5564	5564		26.693	0	1	1208300	+		47839	19848	33198	33250	53239	53239					-0.03196332041329697
LSHYVTNTL	9	Unmodified	_LSHYVTNTL_					0	0	0			REV__ENST00000596245.1_1_19:8590207-8591472:-|nuORF	REV__ENST00000596245.1_1_19:8590207-8591472:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3040161132812	2	524.277106	1046.53966	-0.31895	-0.00016722	4.2381	0.002222	3.9192	0.0020547	524.2791942769429	89.568	0.68649	89.44	89.159	89.846	-0.12774					36	15	3	0	0	0	0.024427	1	10915	10915		26.693	0	1	312580	+		47840	35791	33199	33251	53240	53240					0.018251525806363134
LSICELTTV	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))LSIC(Carbamidomethyl (C))ELTTV_	LSIC(1)ELTTV		LSIC(69)ELTTV		1	1	0		ENST00000419531.2_1_1:59359265-59361990:+|nuORF	ENST00000419531.2_1_1:59359265-59361990:+|nuORF	ENST00000419531.2_1_1:59359265-59361990:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2788696289062	2	539.278457	1076.54236	-1.4136	-0.00076232	1.9507	0.0010519	0.53707	0.00028963	539.27943360872	35.944	2.2143	35.944	35.129	37.343	0					142	59	6	0	0	0	0.35646	1	2785	2785		68.787	10.005	1	13283000			47841	13954	33200	33252	53241	53241	189				0.0071523992323818675
LSICLFPD	8	Unmodified	_LSICLFPD_					0	0	0			REV__ENSG00000103404|ENST00000219689|USP31	REV__ENSG00000103404|ENST00000219689|USP31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2456970214844	2	454.233322	906.45209	0.80644	0.00036631	0.238	0.00010811	1.0444	0.00047442	454.23351985481065	51.764	0.29482	51.58	51.374	51.669	-0.18404					10	7	2	0	0	0	0.027866	1	5308	5308		25.45	0	1	64658	+		47842	21383	33201	33253	53242	53242					-0.00487764614513253
LSICLFPD	8	Unmodified	_LSICLFPD_					0	0	0			REV__ENSG00000103404|ENST00000219689|USP31	REV__ENSG00000103404|ENST00000219689|USP31	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.233322	906.45209	-0.48447	-0.00022006	6.2521	0.0028399	5.7676	0.0026198	454.23612216472503	51.733	0.23462	51.586	51.441	51.676	-0.14735	0.0030235	0.0017354	NaN	25.45	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143170	+		47843	21383	33201	33253							-0.00487764614513253
LSIDFRLL	8	Unmodified	_LSIDFRLL_					0	0	0			REV__nc|ENSG00000101294|Q8TCT9-5|HM13	REV__nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7942810058594	2	488.794935	975.575317	0.45436	0.00022209	-0.60108	-0.0002938	-0.14672	-7.1716E-05	488.7944965426369	72.887	1.2344	72.606	72.139	73.374	-0.28124					64	30	3	0	0	0	0.97794	1	8830	8830		40.778	0.20554	1	2674300	+		47844	21213	33202	33254	53243	53243					0.08655234828290759
LSIDLPRR	8	Unmodified	_LSIDLPRR_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.8057861328125	2	485.295633	968.576714	-1.1165	-0.00054182	0.82328	0.00039953	-0.29319	-0.00014228	485.2951349044683	34.63	0.62476	34.68	34.213	34.838	0.050255					29	15	4	0	0	0	0.027866	1	2497	2497		37.159	0	1	854200			47845	4948	33203	33255	53244	53244					0.09116868917044485
LSIDRWVA	8	Unmodified	_LSIDRWVA_					0	0	0		GPR26|p.V277Cfs*33|1|0.2|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant;ENSG00000154478|ENST00000284674|GPR26	GPR26|p.V277Cfs*33|1|0.2|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant	GPR26|p.V277Cfs*33|1|0.2|ENSG00000154478|chr10:123687970-123687970|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2887878417969	2	480.269084	958.523616	0.15614	7.4991E-05	0.16456	7.9035E-05	0.32071	0.00015403	480.2690485277449	65.921	0.81218	65.648	65.33	66.142	-0.27283					38	21	2	0	0	0	0.027866	1	7837	7837		42.396	5.237	1	1852400			47846	6414	33204	33256	53245	53245					0.042694911343687636
LSIDSDHAL	9	Unmodified	_LSIDSDHAL_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7454833984375	2	485.745639	969.476725	-0.11452	-5.5629E-05	-0.33954	-0.00016493	-0.45407	-0.00022056	485.74544824671005	62.408	0.59152	62.15	61.82	62.411	-0.25824					35	14	3	0	0	0	0.18915	1	7028	7028		90.777	3.0802	1	5404000	+		47847	23401	33205	33257	53246	53246					-0.00923413207442536
LSIFETGSDP	10	Unmodified	_LSIFETGSDP_					0	0	0			REV__ENSG00000162777|ENST00000357640|DENND2D	REV__ENSG00000162777|ENST00000357640|DENND2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.8088989257812	2	533.258579	1064.50261	0.34325	0.00018304	-3.224	-0.0017192	-2.8807	-0.0015362	533.2566540698787	40.844	0.74826	40.721	40.407	41.155	-0.12318					42	20	3	0	0	0	0.03519	1	3645	3645		26.693	0	1	2020300	+		47848	25492	33206	33258	53247	53247					-0.02706563755782554
LSIFETGSDP	10	Unmodified	_LSIFETGSDP_					0	0	0			REV__ENSG00000162777|ENST00000357640|DENND2D	REV__ENSG00000162777|ENST00000357640|DENND2D	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.258579	1064.50261	-0.68222	-0.0003638	-2.2949	-0.0012238	-2.9771	-0.0015876	533.2571827833565	40.837	0.90182	40.86	40.629	41.53	0.023006	0.14144	0.0017413	NaN	42.396	48	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1947400	+		47849	25492	33206	33258							-0.02706563755782554
LSIFKPIVK	9	Unmodified	_LSIFKPIVK_					0	0	0			REV__ENSG00000088451|ENST00000261296|TGDS	REV__ENSG00000088451|ENST00000261296|TGDS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2896118164062	2	522.844428	1043.6743	-0.4825	-0.00025227	0.75573	0.00039513	0.27323	0.00014286	522.8446501012455	56.857	0.59901	56.69	56.402	57.001	-0.1672					32	15	3	0	0	0	0.024292	1	6211	6211		58.782	14.405	1	720460	+		47850	20816	33207	33259	53248	53248					0.15421257793195764
LSIFKPIVK	9	Unmodified	_LSIFKPIVK_					0	0	0			REV__ENSG00000088451|ENST00000261296|TGDS	REV__ENSG00000088451|ENST00000261296|TGDS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.844428	1043.6743	0.39686	0.0002075	-0.12848	-6.7174E-05	0.26838	0.00014032	522.8441827114291	56.891	0.51472	56.688	56.482	56.996	-0.20209	-0.022277	-0.00010363	NaN	58.782	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678450	+		47851	20816	33207	33259							0.15421257793195764
LSIFKPIVK	9	Unmodified	_LSIFKPIVK_					0	0	0			REV__ENSG00000088451|ENST00000261296|TGDS	REV__ENSG00000088451|ENST00000261296|TGDS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.844428	1043.6743	0.27022	0.00014128	-0.22679	-0.00011858	0.043424	2.2704E-05	522.8441858100757	56.978	0.59963	56.753	56.504	57.104	-0.2248	0.0427	-0.00020644	NaN	58.782	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	767200	+		47852	20816	33207	33259							0.15421257793195764
LSIFKRDV	8	Unmodified	_LSIFKRDV_					0	0	0			REV__ENSG00000130935|ENST00000253247|NOL11	REV__ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2913513183594	2	489.292559	976.570566	0.3723	0.00018216	0.4365	0.00021358	0.80881	0.00039574	489.29267255679713	66.165	0.55888	66.165	65.875	66.434	0					44	17	4	0	0	0	0.91956	1	7884	7884		49.442	0	1	7480900	+		47853	23167	33208	33260	53249	53249					0.0813435068552053
LSIFPCCCP	9	Unmodified	_LSIFPCCCP_					0	0	0		ENST00000471816.1_1_1:160766002-160783471:+|nuORF	ENST00000471816.1_1_1:160766002-160783471:+|nuORF	ENST00000471816.1_1_1:160766002-160783471:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7692565917969	2	491.713385	981.412216	-0.14122	-6.944E-05	2.3219	0.0011417	2.1807	0.0010723	491.71451681334764	42.365	0.20391	42.232	42.115	42.319	-0.13219					7	5	2	0	0	0	0.024325	1	3883	3883		50.025	0	1	117740			47854	14970	33209	33261	53250	53250					-0.07923350881094393
LSIFPEITM	9	Unmodified	_LSIFPEITM_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2355346679688	2	525.780636	1049.54672	0.74555	0.000392	0.82946	0.00043612	1.575	0.00082811	526.2849449530794	25.204	0.5879	25.033	24.777	25.365	-0.17151					15	13	2	0	0	0	0.024541	1	1163	1163		17.365	4.4058	1	52586	+		47855	25604	33210	33262	53251	53251					0.023927491368112896
LSIFPEITM	9	Unmodified	_LSIFPEITM_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.780636	1049.54672	-1.3641	-0.0007172	-6.0345	-0.0031728	-7.3986	-0.00389	525.7773203801629	25.019	0.17788	25.019	24.874	25.052	0	-0.0066481	-0.0021963	NaN	23.042	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158810	+		47856	25604	33210	33262							0.023927491368112896
LSIFPEITM	9	Unmodified	_LSIFPEITM_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.780636	1049.54672	-1.3023	-0.00068471	-5.1167	-0.0026902	-6.4189	-0.003375	525.778068735851	25.093	0.26433	25.058	24.815	25.079	-0.034395	0.03237	-0.0012312	NaN	23.042	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225350	+		47857	25604	33210	33262							0.023927491368112896
LSIFPEITM	9	Unmodified	_LSIFPEITM_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.780636	1049.54672	0.36776	0.00019336	-5.7723	-0.003035	-5.4045	-0.0028416	525.7785467760465	24.915	0.5013	24.994	24.547	25.049	0.078346	-0.03257	-0.0019206	NaN	23.042	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114370	+		47858	25604	33210	33262							0.023927491368112896
LSIFVGGEN	9	Unmodified	_LSIFVGGEN_					0	0	0			REV__ENST00000427177.5_1_17:75495228-75495576:+|nuORF	REV__ENST00000427177.5_1_17:75495228-75495576:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2447814941406	2	468.245275	934.475997	-0.29637	-0.00013877	-0.71762	-0.00033602	-1.014	-0.00047479	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	0.75397	1	13274	13274		42.396	3.59	1	6721300	+		47859	32287	33211	33263	53252	53252					0.006137921435311
LSIGAGKAAQF	11	Unmodified	_LSIGAGKAAQF_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3161010742188	2	531.800749	1061.58694	-1.2756	-0.00067838	4.1466	0.0022052	2.871	0.0015268	531.8029239352367	21.519	0.8227	21.306	21.069	21.892	-0.2128					27	16	2	0	0	0	0.024747	1	719	719		24.519	0	1	113800	+		47860	26751	33212	33264	53253	53253					0.058614318515992636
LSIGIERL	8	Unmodified	_LSIGIERL_					0	0	0		ENST00000478919.1_1_4:154555352-154555436:+|nuORF;ENST00000409663.7_1_4:154555352-154556641:+|nuORF	ENST00000478919.1_1_4:154555352-154555436:+|nuORF	ENST00000478919.1_1_4:154555352-154555436:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.77923583984375	2	450.779285	899.544017	-0.022145	-9.9825E-06	-0.34627	-0.00015609	-0.36842	-0.00016608	450.7790651591307	54.374	1.191	54.129	53.891	55.082	-0.2453					91	34	4	0	0	0	0.38451	1	5784	5784		99.375	14.459	1	8413100			47861	13787	33213	33265	53254	53254					0.09022661794188025
LSIGIERL	8	Unmodified	_LSIGIERL_					0	0	0		ENST00000478919.1_1_4:154555352-154555436:+|nuORF;ENST00000409663.7_1_4:154555352-154556641:+|nuORF	ENST00000478919.1_1_4:154555352-154555436:+|nuORF	ENST00000478919.1_1_4:154555352-154555436:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7789001464844	2	450.779285	899.544017	0.33688	0.00015186	-0.67682	-0.0003051	-0.33994	-0.00015324	450.77889651447543	54.3	1.1991	54.103	53.889	55.088	-0.19739					74	32	3	0	0	0	0.35998	1	5765	5765		102.77	8.7669	1	7527100			47862	13787	33213	33265	53255	53255					0.09022661794188025
LSIHQLVE	8	Unmodified	_LSIHQLVE_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000405796.1_1_6:90011978-90012113:+|nuORF	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.75494384765625	2	469.768917	937.523281	-0.030458	-1.4308E-05	-0.14083	-6.6158E-05	-0.17129	-8.0466E-05	469.7687532328566	37.757	1.1234	37.79	37.112	38.235	0.032269					81	30	4	0	0	0	0.027866	1	3022	3022		27.882	12.24	1	1058200			47863	10932	33214	33266	53256	53256					0.052020714145328384
LSIIANAVN	9	Unmodified	_LSIIANAVN_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.31292724609375	2	457.768917	913.523281	0.0032499	1.4877E-06	-0.57928	-0.00026518	-0.57603	-0.00026369	457.7683593847814	44.478	0.50842	44.514	44.241	44.749	0.0369					34	14	3	0	0	0	0.022083	1	4211	4211		31.53	0	1	564630			47864	9809	33215	33267	53257	53257					0.06306071414519465
LSIIHSLET	9	Unmodified	_LSIIHSLET_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.78466796875	2	506.787307	1011.56006	0.065519	3.3204E-05	-0.60771	-0.00030798	-0.54219	-0.00027477	506.7868792144898	73.218	0.45056	72.946	72.678	73.129	-0.27126					16	10	2	0	0	0	0.024436	1	8869	8869		38.806	5.2906	1	203970			47865	4672	33216	33268	53258	53258					0.054743232404462105
LSIIHSLET	9	Unmodified	_LSIIHSLET_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.787307	1011.56006	-0.48989	-0.00024827	-4.5929	-0.0023276	-5.0828	-0.0025759	507.2877404296636	73.604	0.42732	73.339	73.058	73.485	-0.26479	0.13203	-0.0054175	NaN	30.504	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106480			47866	4672	33216	33268							0.054743232404462105
LSIILQDPI	9	Unmodified	_LSIILQDPI_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000069431|O60706|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3074951171875	2	506.307875	1010.6012	-0.41015	-0.00020766	2.6595	0.0013465	2.2494	0.0011389	506.30939285147315	43.594	0.55318	43.482	43.218	43.772	-0.11253					20	14	2	0	0	0	0.024447	1	3988	3988		25.574	6.4705	1	291000			47867	1402	33217	33269	53259	53259					0.0963208427989457
LSIILVQEP	9	Unmodified	_LSIILVQEP_					0	0	0		TNS3|p.T1337I|1|0.15|ENSG00000136205|chr7:47283784-47283784|G/A|missense_variant	TNS3|p.T1337I|1|0.15|ENSG00000136205|chr7:47283784-47283784|G/A|missense_variant	TNS3|p.T1337I|1|0.15|ENSG00000136205|chr7:47283784-47283784|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3082275390625	2	506.307875	1010.6012	-1.025	-0.00051894	3.0523	0.0015454	2.0273	0.0010265	506.3096550664402	43.782	1.1973	43.538	43.24	44.438	-0.2444					59	32	2	0	0	0	0.024288	1	4059	4059		29.17	4.6509	1	355060			47868	38097	33218	33270	53260	53260					0.09632084279905939
LSIIRGIVE	9	Unmodified	_LSIIRGIVE_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3133239746094	2	500.313492	998.612431	-0.39709	-0.00019867	-0.051583	-2.5808E-05	-0.44867	-0.00022448	500.3135104911785	76.329	3.772	76.101	75.528	79.3	-0.22843					266	92	6	0	0	0	0.043667	1	9405	9405		131.03	10.163	1	57941000			47869	9990	33219	33271	53261	53261					0.11306906374034043
LSIITSRLP	9	Unmodified	_LSIITSRLP_					0	0	0			REV__ENST00000451318.2_1_9:135645025-135645512:-|nuORF	REV__ENST00000451318.2_1_9:135645025-135645512:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3134765625	2	500.313492	998.612431	-0.39709	-0.00019867	-0.051583	-2.5808E-05	-0.44867	-0.00022448	500.3135104911785	76.329	3.772	76.101	75.528	79.3	-0.22843					266	92	6	0	0	0	0.23085	1	9489	9489		84.916	8.1414	1	57941000	+		47870	32719	33220	33272	53262	53262					0.11306906374034043
LSIKISINL	9	Unmodified	_LSIKISINL_					0	0	0			REV__ENST00000607797.5_1_5:92889566-92899133:-|nuORF	REV__ENST00000607797.5_1_5:92889566-92899133:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7895202636719	2	500.823692	999.632832	-0.081591	-4.0863E-05	-4.2618	-0.0021344	-4.3434	-0.0021753	500.82012520379567	93.011	0.38129	93.011	92.838	93.219	0					13	8	2	0	0	0	0.024511	1	11804	11804		32.812	13.452	1	43710	+		47871	35959	33221	33273	53263	53263					0.13300077033841262
LSIKKFLLRWY	11	Unmodified	_LSIKKFLLRWY_					0	0	0			REV__ENST00000456064.1_1_20:10594086-10594842:-|nuORF	REV__ENST00000456064.1_1_20:10594086-10594842:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2651672363281	3	489.634257	1465.88094	-1.3237	-0.00064815	3.785	0.0018533	2.4613	0.0012051	489.9706381812542	55.655	0.36535	55.498	55.277	55.643	-0.15655					13	9	2	0	0	0	0.024846	1	5980	5980		8.0344	0	1	89552	+		47872	28745	33222	33274	53264	53264					0.16663625621504252
LSIKKNKE	8	Unmodified	_LSIKKNKE_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2;REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2997741699219	2	480.297842	958.581131	-0.81925	-0.00039348	3.0927	0.0014854	2.2735	0.0010919	480.2991334327223	62.524	1.1974	62.34	62.035	63.233	-0.18386					64	35	4	0	0	0	0.83003	1	7034	7034		56.721	0.28726	1	5872300	+		47873	36612;36611	33223	33275	53265	53265					0.10018333339951369
LSIKKNKE	8	Unmodified	_LSIKKNKE_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2;REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.297842	958.581131	0.28406	0.00013643	1.6588	0.00079672	1.9429	0.00093316	480.29857669584135	62.607	1.1743	62.386	62.045	63.219	-0.22097	-0.0042048	-0.00046293	NaN	56.721	51	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4406800	+		47874	36612;36611	33223	33275							0.10018333339951369
LSIKKNKE	8	Unmodified	_LSIKKNKE_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2;REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	480.297842	958.581131	-0.81925	-0.00039348	3.0927	0.0014854	2.2735	0.0010919	480.2991334327223	62.524	1.1974	62.34	62.035	63.233	-0.18386	-0.050128	0.00091449	NaN	56.721	64	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5872300	+		47875	36612;36611	33223	33275							0.10018333339951369
LSIKKNKE	8	Unmodified	_LSIKKNKE_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2;REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-3|SOHLH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.297842	958.581131	-0.10597	-5.0897E-05	4.1152	0.0019765	4.0092	0.0019256	480.2991628775586	62.703	0.90455	62.444	62.096	63	-0.25824	0.054333	0.0018967	NaN	56.721	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5049100	+		47876	36612;36611	33223	33275							0.10018333339951369
LSIKMKKL	8	Unmodified	_LSIKMKKL_					0	0	0		ENST00000600252.5_1_19:15219832-15221230:+|nuORF;nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	ENST00000600252.5_1_19:15219832-15221230:+|nuORF	ENST00000600252.5_1_19:15219832-15221230:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.79736328125	2	480.817356	959.620159	0.094102	4.5246E-05	3.5435	0.0017038	3.6376	0.001749	480.8187880044364	68.851	0.22714	68.851	68.789	69.016	0					6	5	2	0	0	0	0.027866	1	8267	8267		12.207	0	1	80480			47877	17499	33224	33276	53266	53266					0.13873342369970487
LSIKRRSR	8	Unmodified	_LSIKRRSR_					0	0	0			REV__ENST00000264414.8_1_2:225378289-225378337:-|nuORF	REV__ENST00000264414.8_1_2:225378289-225378337:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799987792969	2	508.327799	1014.64105	-0.61826	-0.00031428	-2.2515	-0.0011445	-2.8698	-0.0014588	508.3270710094445	47.927	0.32544	47.994	47.903	48.228	0.066795					12	8	2	0	0	0	0.027866	1	4805	4805		17.365	5.1581	1	112730	+		47878	29718	33225	33277	53267	53267					0.1343106879385232
LSILATTTK	9	Unmodified	_LSILATTTK_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7583312988281	2	474.292225	946.569897	0.21393	0.00010146	-3.2007	-0.0015181	-2.9868	-0.0014166	474.29059884757044	82.114	1.1605	81.924	81.423	82.584	-0.18944					39	26	2	0	0	0	0.024374	1	9972	9972		32.812	0	1	105780	+		47879	28285	33226	33278	53268	53268					0.09447511245798523
LSILLQLIDP	10	Unmodified	_LSILLQLIDP_					0	0	0			REV__ENST00000509428.5_1_4:109000753-109010298:-|nuORF	REV__ENST00000509428.5_1_4:109000753-109010298:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.733642578125	2	562.849907	1123.68526	0.25876	0.00014564	0.6851	0.00038561	0.94386	0.00053125	562.850260278379	78.568	0.42962	78.337	78.134	78.563	-0.23141					15	9	2	0	0	0	0.03519	1	9408	9408		25.574	10.709	1	84177	+		47880	34084	33227	33279	53269	53269					0.12836615376795635
LSILSADMYS	10	Unmodified	_LSILSADMYS_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2680053710938	2	550.270632	1098.52671	0.096552	5.313E-05	-3.0745	-0.0016918	-2.9779	-0.0016387	550.2688929435121	80.381	1.4326	80.143	79.747	81.179	-0.23783					104	34	5	0	0	0	0.85955	1	9665	9665		56.721	0	1	6856400	+		47881	24640	33228	33280	53270	53270					-0.018610465937854315
LSILYRAID	9	Unmodified	_LSILYRAID_					0	0	0			REV__ENSG00000182676|ENST00000330261|PPP1R27	REV__ENSG00000182676|ENST00000330261|PPP1R27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8026733398438	2	532.310949	1062.60735	-1.4569	-0.00077551	0.57914	0.00030829	-0.87772	-0.00046722	532.3115728386904	79.831	1.1321	79.658	79.275	80.407	-0.17226					44	26	2	0	0	0	0.024418	1	9835	9835		37.812	0	1	111510	+		47882	27503	33229	33281	53271	53271					0.07854602511406483
LSIMEEVLI	9	Unmodified	_LSIMEEVLI_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2888793945312	2	523.793743	1045.57293	0.4309	0.0002257	-4.0328	-0.0021123	-3.6019	-0.0018866	523.7915577681086	51.595	0.38235	51.477	51.122	51.504	-0.11875					23	9	3	0	0	0	0.023181	1	5294	5294		71.296	0	1	2287700			47883	775	33230	33282	53272	53272					0.051970183083312804
LSINEEEPE	9	Unmodified	_LSINEEEPE_					0	0	0		ENSG00000166387|ENST00000299492|PPFIBP2;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENST00000532416.1_1_11:7647064-7652277:+|nuORF	ENSG00000166387|ENST00000299492|PPFIBP2	ENSG00000166387|ENST00000299492|PPFIBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7723388671875	2	530.245669	1058.47678	-0.44388	-0.00023536	1.752	0.00092897	1.3081	0.00069361	530.246387648348	28.865	0.64325	28.715	28.444	29.087	-0.14952					25	14	3	0	0	0	0.024313	1	1663	1663		69.628	21.97	1	230820			47884	7548	33231	33283	53273	53273					-0.05011457998102742
LSIPEYGP	8	Unmodified	_LSIPEYGP_					0	0	0			REV__nc|ENSG00000102858|O60291-4|MGRN1	REV__nc|ENSG00000102858|O60291-4|MGRN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.771240234375	2	438.229094	874.443634	-0.57768	-0.00025316	-3.3089	-0.0014501	-3.8866	-0.0017032	438.22772209683745	22.663	0.64169	22.477	22.236	22.877	-0.18539					23	13	3	0	0	0	0.027866	1	835	835		38.806	5.2906	1	44255	+		47885	21332	33232	33284	53274	53274					0.0013900474052661593
LSIPIRGSH	9	Unmodified	_LSIPIRGSH_					0	0	0			REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.72998046875	2	490.287808	978.561064	-0.43346	-0.00021252	-1.3651	-0.00066931	-1.7986	-0.00088183	490.2874880943379	27.507	0.51412	27.507	27.251	27.765	0					22	13	2	0	0	0	0.024323	1	1537	1537		44.117	0	1	63845	+		47886	20883	33233	33285	53275	53275					0.07092582400002811
LSIQKNIL	8	Unmodified	_LSIQKNIL_					0	0	0		KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.7950134277344	2	464.794935	927.575317	0.01405	6.5305E-06	-0.33608	-0.00015621	-0.32203	-0.00014968	464.79475122110193	34.005	1.0553	33.781	33.485	34.54	-0.22412					76	26	5	0	0	0	0.46709	3	2454	2454;2465;2477		88.643	11.796	1	9242700			47887	17792	33234	33286	53276;53277;53278	53276					0.1086323482828675
LSIQKNIL	8	Unmodified	_LSIQKNIL_					0	0	0		KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7947082519531	2	464.794935	927.575317	-0.23953	-0.00011133	-0.031332	-1.4563E-05	-0.27087	-0.0001259	464.7948926828966	33.988	0.89589	33.781	33.511	34.406	-0.20696					74	22	5	0	0	0	0.27053	3	2458	2446;2458;2470		124.59	18.179	1	9653900			47888	17792	33234	33286	53279;53280;53281	53280					0.1086323482828675
LSIQKNIL	8	Unmodified	_LSIQKNIL_					0	0	0		KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	KDR|p.D39N|1|0.19|ENSG00000128052|chr4:55121143-55121143|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.7952880859375	2	464.794935	927.575317	-1.2657	-0.00058829	0.90542	0.00042083	-0.36029	-0.00016746	464.79533553994145	33.988	1.0641	33.813	33.507	34.571	-0.17557					74	26	5	0	0	0	0.2822	3	2446	2446;2457;2471		119.56	17.772	1	8647700			47889	17792	33234	33286	53282;53283;53284	53282					0.1086323482828675
LSIRPPGGL	9	Unmodified	_LSIRPPGGL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7456359863281	2	455.279452	908.544351	0.17428	7.9347E-05	-0.66068	-0.00030079	-0.4864	-0.00022145	455.2790135860697	54.541	0.65731	54.39	53.984	54.641	-0.15036					46	18	4	0	0	0	0.024263	1	5879	5879		34.173	0	1	1257000			47890	1577	33235	33287	53285	53285					0.08642081514040001
LSISIRPVL	9	Unmodified	_LSISIRPVL_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.32421875	2	499.32386	996.633166	1.3587	0.00067843	-1.7525	-0.00087507	-0.39382	-0.00019664	499.3229836235811	63.717	1.9239	63.717	63.336	65.26	0					135	52	4	0	0	0	0.15029	1	7452	7452		99.375	3.1845	1	34948000	+		47891	37281	33236	33288	53286	53286					0.13471496753720658
LSITGVLCII	10	Unmodified	_LSITGVLCII_					0	0	0			REV__nc|ENSG00000140285|P21781-2|FGF7	REV__nc|ENSG00000140285|P21781-2|FGF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3139038085938	2	516.312103	1030.60965	0.62813	0.00032431	2.0739	0.0010708	2.702	0.0013951	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	1.1307	1	12187	12187		26.693	1.1189	1	32395000	+		47892	23998	33237	33289	53287	53287					0.09557314924882121
LSITKVCLI	9	Unmodified	_LSITKVCLI_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28656005859375	2	495.306821	988.599089	0.017957	8.8943E-06	3.9519	0.0019574	3.9698	0.0019663	495.309212861807	67.108	0.3175	67.108	66.968	67.285	0					10	7	2	0	0	0	0.023837	1	8014	8014		74.255	0	1	131010	+		47893	26186	33238	33290	53288	53288					0.10433332270429219
LSITKVEKP	9	Unmodified	_LSITKVEKP_					0	0	0		ENSG00000182271|ENST00000328886|TMIGD1;nc|ENSG00000182271|Q6UXZ0-2|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	ENSG00000182271|ENST00000328886|TMIGD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7665100097656	2	507.813325	1013.6121	-0.091989	-4.6713E-05	0.12607	6.4019E-05	0.034079	1.7306E-05	507.8132871556057	65.756	0.81545	65.787	65.383	66.199	0.031525					63	21	4	0	0	0	0.024307	1	7700	7700		46.457	0	1	2543700			47894	9121	33239	33291	53289	53289					0.10583486654184071
LSIVANMNPS	10	Unmodified	_LSIVANMNPS_					0	0	0			REV__nc|ENSG00000048052|Q9UKV0|HDAC9	REV__nc|ENSG00000048052|Q9UKV0|HDAC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2518920898438	2	523.270967	1044.52738	-0.049976	-2.6151E-05	-1.7671	-0.00092469	-1.8171	-0.00095084	523.7714276652994	53.928	0.25912	53.683	53.458	53.717	-0.2453					12	7	2	0	0	0	0.03519	1	5663	5663		45.972	11.8	1	200470	+		47895	20136	33240	33292	53290	53290					0.006897928459011382
LSIVFLLAV	9	Unmodified	_LSIVFLLAV_					0	0	0			REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.8182067871094	2	487.817879	973.621205	-0.18203	-8.8798E-05	1.5244	0.00074365	1.3424	0.00065485	487.81782356186727	103.83	0.99443	103.83	103.38	104.38	0					40	23	2	0	0	0	0.97516	1	13350	13350		25.45	0	1	175110	+		47896	26238	33241	33293	53291	53291					0.13333880010532084
LSIVGKRN	8	Unmodified	_LSIVGKRN_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF	nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000107186|O75970-5|MPDZ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.77960205078125	2	443.777077	885.5396	0.47658	0.0002115	4.3095	0.0019125	4.7861	0.002124	443.7788415570408	74.308	1.283	74.049	73.78	75.063	-0.25887					56	30	2	0	0	0	0.74904	1	9067	9067		63.306	0.32785	1	2302500			47897	4658;2831	33242	33294	53292	53292					0.09225197371267768
LSIVSTLGLL	10	Unmodified	_LSIVSTLGLL_					0	0	0		ENST00000257897.7_2_12:58119581-58120334:-|nuORF	ENST00000257897.7_2_12:58119581-58120334:-|nuORF	ENST00000257897.7_2_12:58119581-58120334:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7948913574219	2	508.323525	1014.6325	0.080381	4.086E-05	0.53341	0.00027114	0.61379	0.000312	508.32338169535	78.749	0.64359	78.495	78.212	78.856	-0.25471					41	14	4	0	0	0	0.03519	1	9424	9424		34.173	1.3601	1	261660			47898	11410	33243	33295	53293	53293					0.12576657314014028
LSIWFATCL	9	Carbamidomethyl (C)	_LSIWFATC(Carbamidomethyl (C))L_	LSIWFATC(1)L		LSIWFATC(97)L		0	1	0		ENSG00000121377|ENST00000240687|TAS2R7	ENSG00000121377|ENST00000240687|TAS2R7	ENSG00000121377|ENST00000240687|TAS2R7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.7794799804688	2	555.786253	1109.55795	0.032464	1.8043E-05	-3.154	-0.001753	-3.1216	-0.0017349	555.7843043166532	74.65	0.76242	74.375	73.958	74.72	-0.27573					46	17	3	0	0	0	0.15889	1	8783	8783		97.473	15.168	1	2653300			47899	3868	33244	33296	53294	53294	46				0.007555712309340379
LSIWFATCL	9	Carbamidomethyl (C)	_LSIWFATC(Carbamidomethyl (C))L_	LSIWFATC(1)L		LSIWFATC(120)L		0	1	0		ENSG00000121377|ENST00000240687|TAS2R7	ENSG00000121377|ENST00000240687|TAS2R7	ENSG00000121377|ENST00000240687|TAS2R7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7824096679688	2	555.786253	1109.55795	0.3871	0.00021515	-3.3274	-0.0018493	-2.9403	-0.0016342	555.7842654447932	74.407	1.4932	74.225	73.889	75.382	-0.18279					65	35	3	0	0	0	0.08613	1	8766	8766		115.46	27.705	1	1775600			47900	3868	33244	33296	53295	53295	46				0.007555712309340379
LSIWMNYY	8	Unmodified	_LSIWMNYY_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.816650390625	2	545.257328	1088.5001	-0.93123	-0.00050776	2.296	0.0012519	1.3648	0.00074415	545.258642744441	67.348	0.62872	67.11	66.838	67.466	-0.23814					36	14	4	0	0	0	0.027866	1	7770	7770		50.025	4.0523	1	1236200	+		47901	20289	33245	33297	53296	53296					-0.040606906944731236
LSIYLLFF	8	Unmodified	_LSIYLLFF_					0	0	0		ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2358093261719	2	508.296779	1014.57901	-0.40404	-0.00020537	2.4596	0.0012502	2.0556	0.0010448	508.2976491011921	31.203	0.71461	31.215	30.791	31.505	0.011799					36	16	3	0	0	0	0.027866	1	2075	2075		35.201	0	1	263440			47902	16166	33246	33298	53297	53297					0.07229904602138504
LSIYSIWFYD	10	Unmodified	_LSIYSIWFYD_					0	0	0		nc|ENSG00000272886|Q9NPI6-2|DCP1A;ENSG00000272886|ENST00000610213|DCP1A	nc|ENSG00000272886|Q9NPI6-2|DCP1A	nc|ENSG00000272886|Q9NPI6-2|DCP1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7378845214844	3	436.216657	1305.62814	-0.36894	-0.00016094	-4.3724	-0.0019073	-4.7413	-0.0020683	436.2137050203726	41.025	0.1938	40.889	40.791	40.985	-0.13553					6	4	2	0	0	0	0.03519	1	3595	3595		29.17	9.1396	1	25207			47903	11017	33247	33299	53298	53298					-0.012448518995824998
LSIYVFLQP	9	Unmodified	_LSIYVFLQP_					0	0	0		CYSLTR2|p.A139Gfs*41|1|0.13|ENSG00000152207|chr13:48707229-48707230|-/T|frameshift_variant;ENSG00000152207|ENST00000682523|CYSLTR2	CYSLTR2|p.A139Gfs*41|1|0.13|ENSG00000152207|chr13:48707229-48707230|-/T|frameshift_variant	CYSLTR2|p.A139Gfs*41|1|0.13|ENSG00000152207|chr13:48707229-48707230|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7965087890625	2	540.310418	1078.60628	0.03076	1.662E-05	-0.82214	-0.00044421	-0.79138	-0.00042759	540.3098558748849	77.292	0.96888	77.03	76.473	77.442	-0.26202					30	23	2	0	0	0	0.024209	1	9195	9195		56.721	21.103	1	377780			47904	619	33248	33300	53299	53299					0.07012388142516102
LSKAKISKP	9	Unmodified	_LSKAKISKP_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.748046875	2	486.316035	970.617516	-0.36413	-0.00017708	0.56062	0.00027264	0.1965	9.5559E-05	486.3161024362514	70.082	0.58502	69.814	69.536	70.121	-0.26724					31	13	3	0	0	0	0.024319	1	8142	8142		47.657	23.455	1	341380			47905	3960	33249	33301	53300	53300					0.13103210236647556
LSKALITSVPQ	11	Unmodified	_LSKALITSVPQ_					0	0	0			REV__ENSG00000198265|ENST00000358691|HELZ	REV__ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.8489990234375	2	578.850438	1155.68632	1.5643	0.00090552	-4.051	-0.0023449	-2.4866	-0.0014394	578.847969062675	19.187	0.69261	18.954	18.632	19.325	-0.23345					29	13	4	0	0	0	1.0624	1	379	379		21.686	0.73882	1	405710	+		47906	28406	33250	33302	53301	53301					0.11470829745690025
LSKAMEIL	8	Unmodified	_LSKAMEIL_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.777587890625	2	452.762246	903.50994	-0.014876	-6.7353E-06	1.9892	0.00090062	1.9743	0.00089388	452.7636978521455	40.959	0.5612	40.982	40.797	41.358	0.023006					22	15	2	0	0	0	0.027866	1	3653	3653		47.916	5.4411	1	108130			47907	2994	33251	33303	53302	53302					0.0543249731092601
LSKARETF	8	Unmodified	_LSKARETF_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6;PIK3R3-ZSWIM5|1|fusion;ENSG00000162415|ENST00000359600|ZSWIM5	ENSG00000130449|ENST00000252744|ZSWIM6;PIK3R3-ZSWIM5|1|fusion	PIK3R3-ZSWIM5|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2665100097656	2	476.266542	950.51853	-0.14156	-6.7422E-05	-0.49715	-0.00023677	-0.63871	-0.0003042	476.2663416797438	31.6	1.9286	31.415	31.023	32.952	-0.18503					131	46	5	0	0	0	0.42327	2	2087	2087;2109		94.006	1.8158	1	21439000			47908	4420;6941	33252	33304	53303;53304	53303					0.041291872717465594
LSKARNPK	8	Unmodified	_LSKARNPK_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.8633117675781	2	457.282526	912.550499	-0.54426	-0.00024888	0.51941	0.00023752	-0.024846	-1.1362E-05	457.2827084989862	38.225	0.35675	38.006	37.861	38.218	-0.21848					13	10	2	0	0	0	0.027866	1	3133	3133		35.618	0	1	246980	+		47909	24691	33253	33305	53305	53305					0.09072599745547905
LSKDKHLVK	9	Unmodified	_LSKDKHLVK_					0	0	0			REV__ENST00000462211.5_1_13:101277731-101294530:-|nuORF	REV__ENST00000462211.5_1_13:101277731-101294530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7511596679688	2	534.332216	1066.64988	-1.0198	-0.00054492	0.96226	0.00051417	-0.057546	-3.0748E-05	534.3325583957045	40.129	0.19708	39.899	39.771	39.968	-0.23021					7	4	2	0	0	0	0.024477	1	3420	3420		20.947	0	1	59139	+		47910	22804	33254	33306	53306	53306					0.11921997639660731
LSKEERLW	8	Unmodified	_LSKEERLW_					0	0	0		ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3131103515625	2	530.792924	1059.57129	-0.87599	-0.00046497	0.43483	0.00023081	-0.44116	-0.00023416	530.7932479752811	64.649	0.63494	64.446	64.224	64.859	-0.20254					35	15	3	0	0	0	0.027866	1	7373	7373		30.504	1.3541	1	663430			47911	937	33255	33307	53307	53307					0.04389145334562272
LSKESLLEG	9	Unmodified	_LSKESLLEG_					0	0	0		nc|ENSG00000076356|O75051-2|PLXNA2;ENST00000460870.1_1_1:208383501-208390355:-|nuORF	nc|ENSG00000076356|O75051-2|PLXNA2	nc|ENSG00000076356|O75051-2|PLXNA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.2707824707031	2	488.27149	974.528426	-0.36316	-0.00017732	-0.14439	-7.0501E-05	-0.50755	-0.00024782	488.27139147174597	23.054	0.54984	22.868	22.646	23.196	-0.18539					26	11	3	0	0	0	0.2508	1	876	876		82.241	4.9229	1	476950			47912	18083	33256	33308	53308	53308					0.0401433048649551
LSKFPKKGK	9	Unmodified	_LSKFPKKGK_					0	0	0			REV__ENSG00000147894|ENST00000380003|C9orf72	REV__ENSG00000147894|ENST00000380003|C9orf72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7802734375	2	516.831852	1031.64915	-1.2868	-0.00066505	0.46791	0.00024183	-0.81888	-0.00042322	516.831886240139	44.42	0.63575	44.275	44.099	44.734	-0.14471					32	18	2	0	0	0	0.024427	1	4271	4271		34.173	0	1	258110	+		47913	24587	33257	33309	53309	53309					0.1345920299061163
LSKGERVRA	9	Unmodified	_LSKGERVRA_					0	0	0		nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	nc|ENSG00000006283|O43497-27|CACNA1G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.28033447265625	2	508.30399	1014.59343	-0.67386	-0.00034252	-3.4504	-0.0017538	-4.1242	-0.0020964	508.30261555667335	48.038	0.50321	48.038	47.875	48.378	0					24	14	3	0	0	0	0.024381	1	4910	4910		29.15	0	1	373940			47914	789	33258	33310	53310	53310					0.08671369802982554
LSKGLWFLS	9	Unmodified	_LSKGLWFLS_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|87|3|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|87|3|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|87|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7766723632812	2	525.80276	1049.59097	-0.49305	-0.00025925	-0.33949	-0.00017851	-0.83254	-0.00043775	525.8022295461504	49.199	0.65088	49.046	48.792	49.443	-0.15277					40	17	3	0	0	0	0.024466	1	5107	5107		24.519	3.5723	1	760290			47915	17908	33259	33311	53311	53311					0.06815521345333764
LSKGMRVK	8	Unmodified	_LSKGMRVK_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7503967285156	2	459.781305	917.548056	-0.61064	-0.00028076	-2.7917	-0.0012836	-3.4023	-0.0015643	459.77969192291897	38.436	0.9755	38.354	37.813	38.788	-0.082516					39	26	2	0	0	0	0.027866	1	3147	3147		31.955	6.5047	1	99785			47916	6183	33260	33312	53312	53312					0.08598428016239268
LSKGRESVL	9	Unmodified	_LSKGRESVL_					0	0	0		ENST00000590633.1_1_19:12848319-12856427:+|nuORF;ENSG00000198356|ENST00000357332|GET3	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	ENST00000590633.1_1_19:12848319-12856427:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77423095703125	2	494.792924	987.571294	-1.2098	-0.00059859	3.693	0.0018273	2.4833	0.0012287	494.79420671682686	49.514	0.22491	49.588	49.391	49.615	0.074196					8	5	2	0	0	0	0.024323	1	5041	5041		53.351	3.3269	1	220410			47917	10126	33261	33313	53313	53313					0.07701145334567627
LSKGSIPSPT	10	Unmodified	_LSKGSIPSPT_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7791442871094	2	493.779482	985.544411	1.9476	0.00096169	-1.8897	-0.00093312	0.057861	2.8571E-05	493.77832261532706	23.963	0.96573	23.782	23.495	24.461	-0.18089					34	21	2	0	0	0	0.75651	1	967	967		63.534	1.8426	1	802510	+		47918	26976	33262	33314	53314	53314					0.0510603672336174
LSKGYFQQ	8	Unmodified	_LSKGYFQQ_					0	0	0			REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2272644042969	2	485.753267	969.491981	-0.37926	-0.00018423	0.19315	9.3821E-05	-0.18612	-9.0408E-05	485.7532169454664	54.481	0.57679	54.344	54.119	54.696	-0.13617					27	15	2	0	0	0	0.027866	1	5822	5822		30.504	1.3541	1	565460	+		47919	27400	33263	33315	53315	53315					0.006014983804220719
LSKGYFQQ	8	Unmodified	_LSKGYFQQ_					0	0	0			REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2271728515625	2	485.753267	969.491981	-0.028825	-1.4002E-05	-0.32297	-0.00015688	-0.3518	-0.00017089	485.75298685910644	54.644	0.6039	54.413	54.181	54.785	-0.23087					25	16	2	0	0	0	0.027866	1	5838	5838		27.882	1.1893	1	479600	+		47920	27400	33263	33315	53316	53316					0.006014983804220719
LSKHDTEKPR	10	Unmodified	_LSKHDTEKPR_					0	0	0			REV__ENSG00000025293|ENST00000374012|PHF20	REV__ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.2229919433594	3	404.222805	1209.64658	0.94841	0.00038337	-0.5936	-0.00023995	0.35482	0.00014343	404.22248125372397	17.768	1.4128	17.626	16.977	18.39	-0.14278					61	29	4	0	0	0	1.0344	1	199	199		38.714	3.5359	1	510600	+		47921	20020	33264	33316	53317	53317					0.0501470279498335
LSKIASKTV	9	Unmodified	_LSKIASKTV_					0	0	0		ENSG00000183578|ENST00000637513|TNFAIP8L3;nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7779235839844	2	473.800217	945.585882	0.26498	0.00012555	1.6585	0.0007858	1.9235	0.00091134	473.80188989925847	24.211	0.48215	24.211	24.036	24.518	0					13	10	2	0	0	0	0.024288	1	1050	1050		52.937	0	1	31951			47922	9245	33265	33317	53318	53318					0.1109121748271491
LSKIHPMY	8	Unmodified	_LSKIHPMY_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;ENST00000581682.1_1_17:11787806-11828539:+|nuORF;nc|ENSG00000007174|Q9NYC9-3|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.3233642578125	2	494.767863	987.521173	-1.1104	-0.00054941	4.18	0.0020681	3.0695	0.0015187	494.76979194884933	64.81	0.83116	64.547	64.119	64.95	-0.2626					45	21	3	0	0	0	0.027866	1	7604	7604		37.028	2.8559	1	973810			47923	653	33266	33318	53319	53319					0.026913194050507627
LSKILQRGR	9	Unmodified	_LSKILQRGR_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1;nc|ENSG00000164252|Q8N302-3|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.8152465820312	2	535.843282	1069.67201	0.16395	8.7852E-05	2.3445	0.0012563	2.5084	0.0013441	535.8445006215326	71.528	0.65201	71.24	71.036	71.688	-0.28858					27	16	2	0	0	0	0.0245	1	8663	8663		29.17	0	1	259870			47924	7245	33267	33319	53320	53320					0.13996222108062284
LSKKKKILFFP	11	Unmodified	_LSKKKKILFFP_					0	0	0			REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF	REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2813415527344	3	450.295353	1347.86423	-0.14281	-6.4307E-05	1.7409	0.00078393	1.5981	0.00071962	450.2961973158517	51.174	0.32813	51.025	50.933	51.261	-0.14916					10	8	2	0	0	0	0.024873	1	5389	5389		14.086	8.085	1	585530	+		47925	35328	33268	33320	53321	53321					0.204211247355488
LSKKPPPASP	10	Unmodified	_LSKKPPPASP_					0	0	0			REV__nc|ENSG00000166197|Q14978-3|NOLC1	REV__nc|ENSG00000166197|Q14978-3|NOLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2698364257812	2	511.305667	1020.59678	0.52158	0.00026669	3.1888	0.0016305	3.7104	0.0018971	511.3068715701069	107.45	0.059189	107.29	107.24	107.3	-0.15772					4	2	2	0	0	0	0.03519	1	13334	13334		34.173	11.13	1	46653	+		47926	36883	33269	33321	53322	53322					0.08730619856987687
LSKKPPPASP	10	Unmodified	_LSKKPPPASP_					0	0	0			REV__nc|ENSG00000166197|Q14978-3|NOLC1	REV__nc|ENSG00000166197|Q14978-3|NOLC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	511.305667	1020.59678	0.057217	2.9255E-05	3.3618	0.0017189	3.419	0.0017482	511.3071272932945	107.45	0.1207	107.44	107.36	107.48	-0.003479	0.041415	-0.00018286	NaN	34.173	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167170	+		47927	36883	33269	33321							0.08730619856987687
LSKKSQKW	8	Unmodified	_LSKKSQKW_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENST00000393023.2_1_13:64385317-64385740:-|nuORF;ENST00000420261.1_1_6:32846995-32847538:-|nuORF;nc|ENSG00000234515|Q96PQ5|PPP1R2P1;ENSG00000231989|ENST00000522232|PPP1R2B;ENSG00000184203|ENST00000618156|PPP1R2	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.7972717285156	2	502.798009	1003.58147	1.0219	0.00051382	-0.87698	-0.00044094	0.14494	7.2878E-05	502.79746551013045	19.583	0.59344	19.349	19.176	19.769	-0.23345					28	11	4	0	0	0	0.89803	1	418	418		51.193	1.7511	1	306890			47928	9314	33270	33322	53323	53323					0.07981753059800667
LSKKVKLL	8	Unmodified	_LSKKVKLL_					0	0	0		ENST00000465407.5_1_10:46135230-46135753:-|nuORF	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.8130187988281	2	464.83132	927.648088	-0.86967	-0.00040425	-1.4347	-0.00066691	-2.3044	-0.0010712	464.8304441838347	38.096	0.17082	37.877	37.755	37.926	-0.21848					6	4	2	0	0	0	0.027866	1	3094	3094		20.482	8.275	1	139300			47929	14781	33271	33323	53324	53324					0.18136988621711225
LSKLKKMF	8	Unmodified	_LSKLKKMF_					0	0	0		ENSG00000103423|ENST00000262375|DNAJA3	ENSG00000103423|ENST00000262375|DNAJA3	ENSG00000103423|ENST00000262375|DNAJA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7884521484375	2	497.809531	993.604509	-0.40692	-0.00020257	4.3063	0.0021437	3.8994	0.0019412	497.8112274409757	21.703	0.66595	21.613	21.354	22.02	-0.090092					14	13	2	0	0	0	0.027866	1	686	686		40.778	5.1599	1	14972			47930	2502	33272	33324	53325	53325					0.10745055852908081
LSKLNAADL	9	Unmodified	_LSKLNAADL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2718505859375	2	472.7742	943.533846	0.76283	0.00036065	0.040142	1.8978E-05	0.80298	0.00037963	472.7741956968283	40.803	0.80866	40.803	40.587	41.396	0					28	22	2	0	0	0	0.023655	1	3689	3689		60.118	8.9256	1	478520			47931	6985	33273	33325	53326	53326					0.059820540689429436
LSKLNAADL	9	Unmodified	_LSKLNAADL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.7742	943.533846	-0.039114	-1.8492E-05	-3.7357	-0.0017661	-3.7748	-0.0017846	472.7729481597817	41.299	0.34721	41.164	40.947	41.294	-0.13553	0.18169	-0.0015494	NaN	60.118	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100290			47932	6985	33273	33325							0.059820540689429436
LSKLNAADL	9	Unmodified	_LSKLNAADL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B;nc|ENSG00000162745|Q68BL8-2|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.7742	943.533846	-0.179	-8.4627E-05	-4.2371	-0.0020032	-4.4161	-0.0020878	472.7726411328541	41.415	0.39135	41.187	41.082	41.474	-0.2278	0.20521	-0.0020236	NaN	60.118	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183920			47933	6985	33273	33325							0.059820540689429436
LSKLRGLTQ	9	Unmodified	_LSKLRGLTQ_					0	0	0			REV__nc|ENSG00000177683|Q7Z6K1-2|THAP5	REV__nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.30206298828125	2	508.316566	1014.61858	-0.85009	-0.00043211	0.77259	0.00039272	-0.077504	-3.9396E-05	508.31725344447943	55.908	0.31733	56.006	55.819	56.136	0.097893					10	8	2	0	0	0	0.024261	1	6145	6145		54.776	3.4409	1	94695	+		47934	27137	33274	33326	53327	53327					0.11185424605560002
LSKLRQRL	8	Unmodified	_LSKLRQRL_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.806640625	2	507.33255	1012.65055	0.48329	0.00024519	-0.62321	-0.00031617	-0.13992	-7.0985E-05	507.33201775220743	20.754	0.49266	20.558	20.336	20.828	-0.19577					18	9	3	0	0	0	0.027866	1	576	576		42.396	0	1	68536	+		47935	27183	33275	33327	53328	53328					0.1447283707935867
LSKMERSFG	9	Oxidation (M)	_LSKM(Oxidation (M))ERSFG_		LSKM(1)ERSFG		LSKM(64)ERSFG	0	0	1			REV__nc|ENSG00000010626|Q53EV4-2|LRRC23	REV__nc|ENSG00000010626|Q53EV4-2|LRRC23	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7670288085938	2	535.768591	1069.52263	-0.6583	-0.0003527	-3.0124	-0.0016139	-3.6707	-0.0019666	535.7668438126454	30.316	1.3717	30.167	29.792	31.164	-0.14952					111	32	5	0	0	0	0.42604	1	1908	1908		64.207	14.671	1	3364100	+		47936	19909	33276	33328	53329	53329		614			-0.009350912968329794
LSKMLLKDV	9	Unmodified	_LSKMLLKDV_					0	0	0		ENSG00000204671|ENST00000377035|IL31	ENSG00000204671|ENST00000377035|IL31	ENSG00000204671|ENST00000377035|IL31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2726440429688	2	523.817553	1045.62055	-1.3709	-0.0007181	-3.3411	-0.0017501	-4.712	-0.0024682	523.8160625786596	62.855	0.43907	62.855	62.651	63.09	0					19	10	3	0	0	0	0.024523	1	7304	7304		15.642	0.77694	1	319130			47937	10366	33277	33329	53330	53330					0.09956717299155571
LSKMMVLHRE	10	Unmodified	_LSKMMVLHRE_					0	0	0			REV__ENST00000326474.4_2_3:159944631-159944829:+|nuORF	REV__ENST00000326474.4_2_3:159944631-159944829:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3353271484375	2	622.336118	1242.65768	-2.2817	-0.00142	3.0281	0.0018845	0.74642	0.00046452	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	1.1265	1	13543	13543		24.519	0.31644	1	1465400	+		47938	30405	33278	33330	53331	53331					0.04606065573284468
LSKNGESSNK	10	Unmodified	_LSKNGESSNK_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3056640625	2	532.272552	1062.53055	-1.5027	-0.00079982	-0.8238	-0.00043848	-2.3265	-0.0012383	532.7733966318294	48.529	0.72922	48.253	47.812	48.542	-0.27598					25	19	2	0	0	0	0.03519	1	4770	4770		40.778	20.296	1	185750	+		47939	26857	33279	33331	53332	53332					0.0017875922428629565
LSKNNAIEP	9	Unmodified	_LSKNNAIEP_					0	0	0		ENSG00000185010|ENST00000360256|F8;F8|p.I1213Ffs*5|1|0.47|ENSG00000185010|chrX:154930153-154930153|T/-|frameshift_variant	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7822265625	2	493.269281	984.52401	-0.5191	-0.00025605	-0.30392	-0.00014992	-0.82302	-0.00040597	493.2689389462281	56.436	0.40766	56.534	56.209	56.616	0.097897					20	10	3	0	0	0	0.023061	1	6223	6223		60.118	0	1	290390			47940	9396	33280	33332	53333	53333					0.03112866063565889
LSKNQLWIL	9	Unmodified	_LSKNQLWIL_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|62	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|62	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|62	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.834228515625	2	557.834591	1113.65463	-0.46369	-0.00025866	0.057594	3.2128E-05	-0.40609	-0.00022653	557.8345201841604	64.283	0.70988	64.027	63.716	64.426	-0.25563					41	17	4	0	0	0	0.64897	1	7284	7284		49.536	0	1	1137000			47941	421	33281	33333	53334	53334					0.10234881782434968
LSKNSKEHS	9	Unmodified	_LSKNSKEHS_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3171997070312	2	515.269813	1028.52507	-0.62777	-0.00032347	0.58036	0.00029904	-0.047408	-2.4428E-05	515.2698663496179	32.623	0.78344	32.635	32.376	33.16	0.011799					46	20	4	0	0	0	0.024487	1	2237	2237		24.203	0	1	1195300	+		47942	24351	33282	33334	53335	53335					0.011950804324669662
LSKQKIPR	8	Unmodified	_LSKQKIPR_					0	0	0			REV__nc|ENSG00000120688|O75554-2|WBP4	REV__nc|ENSG00000120688|O75554-2|WBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2966613769531	2	485.313826	968.613099	-0.633	-0.0003072	0.0027141	1.3172E-06	-0.63028	-0.00030588	485.3140120817395	32.592	0.55499	32.604	32.338	32.893	0.011795					23	14	3	0	0	0	0.027866	1	2273	2273		18.324	0	1	131050	+		47943	36613	33283	33335	53336	53336					0.12753745813756723
LSKQPASSH	9	Unmodified	_LSKQPASSH_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.75286865234375	2	477.753798	953.493044	-0.093751	-4.479E-05	0.59563	0.00028457	0.50188	0.00023978	477.7537584201316	32.14	0.77585	32.152	31.782	32.558	0.011799					35	19	3	0	0	0	0.024337	1	2245	2245		49.536	0	1	929900	+		47944	26323	33284	33336	53337	53337					0.014437127493238222
LSKQPLFSP	9	Unmodified	_LSKQPLFSP_					0	0	0		ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.234130859375	2	508.792392	1015.57023	0.023588	1.2002E-05	2.2766	0.0011583	2.3002	0.0011703	508.7933302382196	104.69	0.46219	104.68	104.51	104.98	-0.0015945					22	13	2	0	0	0	0.02435	1	13391	13391		19.997	0	1	51430			47945	4162	33285	33337	53338	53338					0.06306930965649826
LSKQRRRA	8	Unmodified	_LSKQRRRA_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;RYR1|p.A3774Gfs*37|1|0.33|ENSG00000196218|chr19:38534774-38534775|-/G|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.28631591796875	2	507.817599	1013.62064	-0.07287	-3.7004E-05	2.3197	0.001178	2.2469	0.001141	507.81866427553234	58.602	1.0898	58.414	58.093	59.182	-0.18795					39	16	3	0	0	0	0.027866	1	6404	6404		34.173	0	1	1542800			47946	9837	33286	33338	53339	53339					0.1143789813403373
LSKRKYPAL	9	Unmodified	_LSKRKYPAL_					0	0	0		nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF	nc|ENSG00000118322|O94823-3|ATP10B	nc|ENSG00000118322|O94823-3|ATP10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.78369140625	2	538.334759	1074.65496	0.12837	6.9108E-05	-0.71785	-0.00038644	-0.58948	-0.00031734	538.3341319197195	76.971	0.29556	76.72	76.528	76.823	-0.25162					10	6	2	0	0	0	0.024539	1	9135	9135		35.618	8.9254	1	90389			47947	15996	33287	33339	53340	53340					0.12062301502260198
LSKRKYPAL	9	Unmodified	_LSKRKYPAL_					0	0	0		nc|ENSG00000118322|O94823-3|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF	nc|ENSG00000118322|O94823-3|ATP10B	nc|ENSG00000118322|O94823-3|ATP10B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.334759	1074.65496	-1.059	-0.00057007	0.73128	0.00039367	-0.32767	-0.0001764	538.8364411455515	76.884	0.33669	76.715	76.482	76.818	-0.16854	0.0063107	0.00070154	NaN	32.812	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78068			47948	15996	33287	33339							0.12062301502260198
LSKRLSAPL	9	Unmodified	_LSKRLSAPL_					0	0	0			REV__ENST00000523244.5_1_8:26366524-26366590:-|nuORF	REV__ENST00000523244.5_1_8:26366524-26366590:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2587585449219	2	492.813659	983.612765	0.37165	0.00018315	1.3668	0.00067357	1.7384	0.00085672	492.81332225444197	41.62	0.56031	41.62	41.36	41.921	0					26	15	3	0	0	0	0.024263	1	3749	3749		34.173	0	1	165990	+		47949	34351	33288	33340	53341	53341					0.12030326093884014
LSKRLSAPL	9	Unmodified	_LSKRLSAPL_					0	0	0			REV__ENST00000523244.5_1_8:26366524-26366590:-|nuORF	REV__ENST00000523244.5_1_8:26366524-26366590:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.813659	983.612765	-0.52119	-0.00025685	1.0369	0.00051098	0.51567	0.00025413	492.8138936184291	41.725	0.70299	41.602	41.15	41.853	-0.12299	-0.11039	0.00040474	NaN	34.173	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405940	+		47950	34351	33288	33340							0.12030326093884014
LSKRPGKTT	9	Unmodified	_LSKRPGKTT_					0	0	0			REV__ENST00000606367.1_1_6:31165196-31165424:-|nuORF	REV__ENST00000606367.1_1_6:31165196-31165424:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3006896972656	2	494.300916	986.587279	0.89614	0.00044296	-1.5866	-0.00078426	-0.69047	-0.0003413	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	0.96906	1	12251	12251		26.693	1.2427	1	45891000	+		47951	35929	33289	33341	53342	53342					0.09344851571461277
LSKRTARAR	9	Unmodified	_LSKRTARAR_					0	0	0			REV__ENST00000592988.5_1_17:76183451-76198833:+|nuORF	REV__ENST00000592988.5_1_17:76183451-76198833:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3025512695312	2	529.830706	1057.64686	-0.19242	-0.00010195	-4.147	-0.0021972	-4.3394	-0.0022992	529.8285047426631	34.558	0.43348	34.334	34.106	34.54	-0.22412					17	10	2	0	0	0	0.024541	1	2533	2533		20.947	0	1	169210	+		47952	27535	33290	33342	53343	53343					0.12034167305500887
LSKSCQPQN	9	Unmodified	_LSKSCQPQN_					0	0	0		ENSG00000197683|ENST00000360542|KRTAP26-1	ENSG00000197683|ENST00000360542|KRTAP26-1	ENSG00000197683|ENST00000360542|KRTAP26-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2909240722656	2	502.745116	1003.47568	-0.18115	-9.1072E-05	-2.9917	-0.0015041	-3.1729	-0.0015951	502.7434399988717	55	0.63723	54.769	54.459	55.096	-0.23087					40	17	3	0	0	0	0.024288	1	5868	5868		29.17	0	1	1252900			47953	10032	33291	33343	53344	53344					-0.025919508479887554
LSKSKGLPK	9	Unmodified	_LSKSKGLPK_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29766845703125	2	479.30821	956.601866	0.91636	0.00043922	-0.67911	-0.0003255	0.23725	0.00011372	479.3075658079175	18.99	0.44524	18.829	18.639	19.084	-0.16079					10	8	2	0	0	0	0.024506	1	389	389		30.504	6.3009	1	42321			47954	7703	33292	33344	53345	53345					0.12182923719603878
LSKSKKAQV	9	Unmodified	_LSKSKKAQV_					0	0	0		ENST00000480041.1_1_X:48854502-48855745:-|nuORF	ENST00000480041.1_1_X:48854502-48855745:-|nuORF	ENST00000480041.1_1_X:48854502-48855745:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2867126464844	2	494.811116	987.60768	0.28343	0.00014024	3.1993	0.001583	3.4827	0.0017233	494.812181074551	67.667	0.54238	67.691	67.43	67.972	0.023903					31	13	3	0	0	0	0.024495	1	7973	7973		34.173	0	1	510230			47955	15185	33293	33345	53346	53346					0.11338022231279865
LSKSNKPI	8	Unmodified	_LSKSNKPI_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.7714538574219	2	443.77146	885.528367	0.34936	0.00015504	-0.15956	-7.081E-05	0.1898	8.4226E-05	443.7712519477878	32.42	0.9615	32.228	31.942	32.904	-0.19261					62	22	5	0	0	0	0.44658	1	2225	2225		90.777	0	1	2546600			47956	5808	33294	33346	53347	53347					0.08102375277132978
LSKSVALTF	9	Unmodified	_LSKSVALTF_					0	0	0		ENST00000463934.1_1_22:39475113-39475338:+|nuORF	ENST00000463934.1_1_22:39475113-39475338:+|nuORF	ENST00000463934.1_1_22:39475113-39475338:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2691955566406	2	483.286943	964.559333	-0.38857	-0.00018779	-1.5464	-0.00074735	-1.935	-0.00093514	483.2861237531274	46.461	0.43542	46.258	46.005	46.441	-0.20226					22	11	3	0	0	0	0.024319	1	4438	4438		47.657	8.8512	1	339730			47957	14748	33295	33347	53348	53348					0.07563528591367685
LSKTEFLSF	9	Unmodified	_LSKTEFLSF_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.28955078125	2	536.289682	1070.56481	-0.088263	-4.7335E-05	-0.60599	-0.00032499	-0.69425	-0.00037232	536.2891897269583	67.104	0.78797	66.856	66.63	67.418	-0.24839					51	20	3	0	0	0	0.015512	3	7706	7696;7706;7719		159.28	45.615	1	3953100			47958	7047	33296	33348	53349;53350;53351	53350					0.03235207383158922
LSKTEFLSF	9	Unmodified	_LSKTEFLSF_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2886962890625	2	536.289682	1070.56481	-0.8257	-0.00044282	0.19154	0.00010272	-0.63417	-0.0003401	536.2896438234494	67.032	0.7908	66.808	66.607	67.397	-0.22374					56	21	4	0	0	0	0.012922	3	7708	7700;7708;7720		172.25	53.59	1	3618100			47959	7047	33296	33348	53352;53353;53354	53353					0.03235207383158922
LSKTEFLSF	9	Unmodified	_LSKTEFLSF_					0	0	0		ENSG00000163191|ENST00000271638|S100A11;ENST00000478109.1_1_1:152005140-152020324:-|nuORF	ENSG00000163191|ENST00000271638|S100A11	ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2902221679688	2	536.289682	1070.56481	-1.0202	-0.00054715	0.48016	0.00025751	-0.54008	-0.00028964	536.2897376779857	67.074	0.73709	66.829	66.589	67.327	-0.24517					46	19	3	0	0	0	0.012922	3	7703	7691;7703;7716		172.25	70.648	1	3512500			47960	7047	33296	33348	53355;53356;53357	53356					0.03235207383158922
LSKTHFPIV	9	Unmodified	_LSKTHFPIV_					0	0	0		ENSG00000142556|ENST00000270649|ZNF614;nc|ENSG00000142556|Q8N883-2|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7379760742188	2	521.30821	1040.60187	-1.2338	-0.00064318	1.5788	0.00082304	0.34501	0.00017985	521.3078475188163	61.875	0.39815	61.875	61.682	62.08	0					21	10	3	0	0	0	0.02435	1	7181	7181		42.396	11.892	1	132840			47961	5570	33297	33349	53358	53358					0.0831892371959384
LSKVKHAYY	9	Unmodified	_LSKVKHAYY_					0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.32958984375	2	554.811116	1107.60768	0.3857	0.00021399	-3.8028	-0.0021099	-3.4171	-0.0018959	554.8090997451741	32.614	0.41434	32.422	32.162	32.576	-0.19262					12	9	2	0	0	0	0.024381	1	2238	2238		21.96	0	1	58480	+		47962	25078	33298	33350	53359	53359					0.05818022231255782
LSKVLRPH	8	Unmodified	_LSKVLRPH_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L;RAD54L|p.K213Tfs*12|1|0.33|ENSG00000085999|chr1:46260883-46260884|-/AC|frameshift_variant	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.3005065917969	2	475.300719	948.586885	1.1773	0.00055957	-1.532	-0.00072814	-0.35467	-0.00016858	475.29993416274027	39.578	1.4466	39.578	38.868	40.314	0					101	40	4	0	0	0	0.96769	1	3429	3429		42.396	3.59	1	9076000			47963	1806	33299	33351	53360	53360					0.11053476642280202
LSKWKSII	8	Unmodified	_LSKWKSII_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79229736328125	2	487.805303	973.596052	-0.29351	-0.00014317	0.37996	0.00018535	0.086457	4.2174E-05	487.805302597893	79.022	1.2547	79.022	78.447	79.701	0					69	29	3	0	0	0	0.027866	1	9730	9730		52.937	0	1	360870	+		47964	21051	33300	33352	53361	53361					0.10819825207954636
LSKYIVIIM	9	Unmodified	_LSKYIVIIM_					0	0	0		ENST00000464356.6_2_1:156435963-156436056:-|nuORF	ENST00000464356.6_2_1:156435963-156436056:-|nuORF	ENST00000464356.6_2_1:156435963-156436056:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.2852172851562	2	540.330296	1078.64604	-0.34557	-0.00018672	1.3905	0.00075132	1.0449	0.0005646	540.3322965537494	40.378	0.45034	40.378	40.137	40.587	0					32	12	3	0	0	0	0.024523	1	3525	3525		29.15	8.2026	1	268460			47965	14762	33301	33353	53362	53362					0.1098619182157563
LSLAAVHLSP	10	Unmodified	_LSLAAVHLSP_					0	0	0			REV__ENST00000451963.1_2_7:99818046-99818860:+|nuORF	REV__ENST00000451963.1_2_7:99818046-99818860:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.2386169433594	2	504.297842	1006.58113	-0.2782	-0.0001403	-0.4569	-0.00023041	-0.7351	-0.00037071	504.2975834072668	63.268	1.2411	63.268	62.531	63.772	0					71	32	3	0	0	0	0.03519	1	7431	7431		34.173	7.3764	1	1370500	+		47966	32727	33302	33354	53363	53363					0.0781033333993264
LSLAEGWQL	9	Unmodified	_LSLAEGWQL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7749938964844	2	508.7742	1015.53385	0.11922	6.0655E-05	0.43071	0.00021914	0.54993	0.00027979	508.77424659037337	87.037	0.9583	87.001	86.734	87.693	-0.035362					47	22	3	0	0	0	0.27161	1	10915	10915		79.451	0	1	1487100			47967	10056	33303	33355	53364	53364					0.02670054068948957
LSLAEGWQL	9	Unmodified	_LSLAEGWQL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.7742	1015.53385	0.03337	1.6978E-05	0.40344	0.00020526	0.43681	0.00022224	508.7742620881729	87.102	0.99919	87.102	86.69	87.69	0	0.1245	3.6504E-05	NaN	79.451	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1289700			47968	10056	33303	33355							0.02670054068948957
LSLAEGWQL	9	Unmodified	_LSLAEGWQL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.7742	1015.53385	0.34852	0.00017732	-0.54298	-0.00027625	-0.19446	-9.8935E-05	508.7740733684696	86.989	1.1243	87.01	86.634	87.759	0.021263	0.032447	-0.00092652	NaN	79.451	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1449900			47969	10056	33303	33355							0.02670054068948957
LSLAEGWQL	9	Unmodified	_LSLAEGWQL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.7742	1015.53385	-0.031499	-1.6026E-05	0.81635	0.00041534	0.78485	0.00039931	508.7745652457799	87.121	0.58258	86.943	86.655	87.238	-0.17874	-0.035379	0.00045666	NaN	79.451	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370780			47970	10056	33303	33355							0.02670054068948957
LSLAEGWQL	9	Unmodified	_LSLAEGWQL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.7742	1015.53385	0.41604	0.00021167	0.23961	0.00012191	0.65565	0.00033358	508.7741525524978	87.021	0.59023	86.882	86.585	87.175	-0.13918	-0.096125	-0.00013021	NaN	79.451	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461770			47971	10056	33303	33355							0.02670054068948957
LSLAEGWQL	9	Unmodified	_LSLAEGWQL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.7742	1015.53385	-0.082089	-4.1765E-05	0.49024	0.00024942	0.40815	0.00020766	508.7745381979023	87.066	0.9279	86.929	86.574	87.502	-0.13734	-0.048861	0.00012483	NaN	79.451	48	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405110			47972	10056	33303	33355							0.02670054068948957
LSLAEKLAL	9	Unmodified	_LSLAEKLAL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7355041503906	2	479.302593	956.590633	0.81571	0.00039097	-0.79982	-0.00038336	0.015884	7.6134E-06	479.3021741911183	59.644	0.80183	59.443	59.136	59.938	-0.20016					47	21	4	0	0	0	0.024292	1	6815	6815		40.778	0	1	1921900			47973	9981	33304	33356	53365	53365					0.1106010162544635
LSLALMLLW	9	Unmodified	_LSLALMLLW_					0	0	0		ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.60791015625	2	530.317189	1058.61982	-0.36754	-0.00019491	2.5068	0.0013294	2.1393	0.0011345	530.3182594177331	73.021	0.51442	72.744	72.454	72.968	-0.2769					23	11	3	0	0	0	0.024541	1	8555	8555		18.324	3.6603	1	189140			47974	3028	33305	33357	53366	53366					0.09285922650087741
LSLAVERL	8	Unmodified	_LSLAVERL_					0	0	0		ENSG00000086506|ENST00000199708|HBQ1	ENSG00000086506|ENST00000199708|HBQ1	ENSG00000086506|ENST00000199708|HBQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7788391113281	2	450.779285	899.544017	-0.43458	-0.0001959	-0.12822	-5.78E-05	-0.5628	-0.0002537	450.77917080274807	54.208	1.3243	54.072	53.808	55.132	-0.13617					88	37	4	0	0	0	0.35998	1	5753	5753		102.77	0	1	9639200			47975	1816	33306	33358	53367	53367					0.09022661794188025
LSLCAFPTF	9	Unmodified	_LSLCAFPTF_					0	0	0			REV__nc|ENSG00000109618|Q9HD40-3|SEPSECS	REV__nc|ENSG00000109618|Q9HD40-3|SEPSECS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.2080078125	2	499.754421	997.494289	-0.40866	-0.00020423	-3.6347	-0.0018165	-4.0434	-0.0020207	499.75275956640127	41.792	0.6049	41.561	41.232	41.837	-0.23129					23	15	2	0	0	0	0.024294	1	3724	3724		45.952	17.698	1	365480	+		47976	36560	33307	33359	53368	53368					-0.004557892061257007
LSLCIRHS	8	Unmodified	_LSLCIRHS_					0	0	0			REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	REV__ENST00000522752.5_1_8:38614850-38697853:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.794921875	2	464.755287	927.496021	0.05702	2.65E-05	-0.46473	-0.00021599	-0.40771	-0.00018948	464.7552155669347	34.328	0.61699	34.104	33.803	34.42	-0.22412					32	15	3	0	0	0	0.027866	1	2490	2490		82.305	8.3303	1	652340	+		47977	34343	33308	33360	53369	53369					0.029372646024853566
LSLCKLAKL	9	Unmodified	_LSLCKLAKL_					0	0	0			REV__ENSG00000137492|ENST00000260045|THAP12	REV__ENSG00000137492|ENST00000260045|THAP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.8130187988281	2	494.814813	987.615073	0.87089	0.00043093	-3.7955	-0.0018781	-2.9246	-0.0014471	494.8126899827308	70.554	0.88637	70.261	70.184	71.07	-0.29291					34	23	2	0	0	0	0.2101	1	8501	8501		87.696	12.653	1	779410	+		47978	23760	33309	33361	53370	53370					0.12077038507345605
LSLCKLAKL	9	Unmodified	_LSLCKLAKL_					0	0	0			REV__ENSG00000137492|ENST00000260045|THAP12	REV__ENSG00000137492|ENST00000260045|THAP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.8134765625	2	494.814813	987.615073	-0.10751	-5.3198E-05	-3.086	-0.001527	-3.1935	-0.0015802	494.81318938146694	70.394	0.61019	70.407	70.246	70.856	0.012421					26	14	2	0	0	0	0.28753	1	8434	8434		77.318	11.852	1	914270	+		47979	23760	33309	33361	53371	53371					0.12077038507345605
LSLCRALP	8	Unmodified	_LSLCRALP_					0	0	0		ENST00000568067.1_1_15:42503908-42510186:-|nuORF	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	ENST00000568067.1_1_15:42503908-42510186:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.755126953125	2	436.754756	871.494958	1.5916	0.00069513	-1.4027	-0.00061262	0.18892	8.251E-05	436.75399640960234	22.975	0.63737	22.784	22.572	23.209	-0.19117					34	13	3	0	0	0	0.71833	1	843	843		65.803	2.4969	1	735090			47980	16973	33310	33362	53372	53372					0.05407050233577593
LSLCRIPAVSV	11	Unmodified	_LSLCRIPAVSV_					0	0	0		sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	sp|P03191|EAD_EBVB9DNApolymeraseprocessivityfactorBMRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF1PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.3369140625	2	579.339184	1156.66381	0.53314	0.00030887	-3.2236	-0.0018676	-2.6905	-0.0015587	579.337238642151	84.043	0.64402	83.832	83.558	84.202	-0.21159					39	14	4	0	0	0	0.84303	1	10139	10139		55.084	12.22	1	526130			47981	37923	33311	33363	53373	53373					0.09174907076430827
LSLDANEGY	9	Unmodified	_LSLDANEGY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.2281494140625	2	491.229822	980.445091	-0.7397	-0.00036336	1.8938	0.00093031	1.1541	0.00056694	491.2306608207311	62.001	0.76723	61.823	61.536	62.304	-0.17781					46	19	3	0	0	0	0.31037	1	6979	6979		74.255	2.8771	1	1806400	+		47982	36675	33312	33364	53374	53374					-0.04591405961377859
LSLDANEGY	9	Unmodified	_LSLDANEGY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.229822	980.445091	-0.37568	-0.00018454	2.3519	0.0011553	1.9762	0.00097078	491.2308026727632	61.76	0.44242	61.76	61.566	62.009	0	-0.062484	0.00055313	NaN	74.255	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462450	+		47983	36675	33312	33364							-0.04591405961377859
LSLDANEGY	9	Unmodified	_LSLDANEGY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	491.229822	980.445091	-0.13652	-6.7063E-05	1.7965	0.00088249	1.66	0.00081543	491.230646499129	62.059	0.54959	61.832	61.534	62.084	-0.22663	0.010157	7.4698E-06	NaN	74.255	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467840	+		47984	36675	33312	33364							-0.04591405961377859
LSLDANEGY	9	Unmodified	_LSLDANEGY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.229822	980.445091	-0.60528	-0.00029733	2.1707	0.0010663	1.5654	0.00076897	491.23082122485624	61.692	0.43524	61.764	61.59	62.026	0.071125	-0.058484	0.0003751	NaN	74.255	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607020	+		47985	36675	33312	33364							-0.04591405961377859
LSLDANEGY	9	Unmodified	_LSLDANEGY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.229822	980.445091	-0.65279	-0.00032067	1.692	0.00083115	1.0392	0.00051048	491.2306888031639	62.06	0.70496	61.847	61.501	62.206	-0.21375	0.024664	-9.5215E-05	NaN	74.255	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1685500	+		47986	36675	33312	33364							-0.04591405961377859
LSLDANEGY	9	Unmodified	_LSLDANEGY_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	491.229822	980.445091	-0.7397	-0.00036336	1.8938	0.00093031	1.1541	0.00056694	491.2306608207311	62.001	0.76723	61.823	61.536	62.304	-0.17781	0.0013964	0.0001031	NaN	74.255	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1806400	+		47987	36675	33312	33364							-0.04591405961377859
LSLDEIADI	9	Unmodified	_LSLDEIADI_					0	0	0			REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3117980957031	2	494.763497	987.512442	-0.22497	-0.00011131	-3.7821	-0.0018712	-4.007	-0.0019825	494.7605197849584	80.754	0.521	80.516	80.206	80.727	-0.23784					20	12	2	0	0	0	0.023837	1	9682	9682		54.776	10.399	1	95510	+		47988	27168	33313	33365	53375	53375					0.018186242495517035
LSLDEIADI	9	Unmodified	_LSLDEIADI_					0	0	0			REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.763497	987.512442	0.33909	0.00016777	-4.6888	-0.0023198	-4.3497	-0.0021521	494.7601612510007	80.731	0.49178	80.524	80.215	80.707	-0.20633	-0.079231	-4.9175E-05	NaN	54.776	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142940	+		47989	27168	33313	33365							0.018186242495517035
LSLDLLAVAG	10	Unmodified	_LSLDLLAVAG_					0	0	0			REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENSG00000092051|ENST00000356300|JPH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2272644042969	2	486.292225	970.569897	-0.40294	-0.00019595	-1.0575	-0.00051426	-1.4605	-0.00071021	486.2911175933587	54.623	0.57032	54.477	54.077	54.647	-0.14609					20	15	2	0	0	0	0.03519	1	5822	5822		44.117	11.304	1	450490	+		47990	20921	33314	33366	53376	53376					0.08343511245811897
LSLDLPPFQN	10	Unmodified	_LSLDLPPFQN_					0	0	0		ENSG00000168152|ENST00000302236|THAP9	ENSG00000168152|ENST00000302236|THAP9	ENSG00000168152|ENST00000302236|THAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.3045654296875	2	572.305864	1142.59717	-0.46715	-0.00026735	4.1225	0.0023594	3.6554	0.002092	572.3079427644611	105.21	1.1602	105.21	104.79	105.95	-0.0015945					61	39	3	0	0	0	0.66532	1	13417	13417		69.628	0.8408	1	338300			47991	7791	33315	33367	53377	53377					0.031579947861928304
LSLDQLFVF	9	Unmodified	_LSLDQLFVF_					0	0	0		ENST00000583660.5_1_11:117710519-117712798:-|nuORF	ENST00000583660.5_1_11:117710519-117712798:-|nuORF	ENST00000583660.5_1_11:117710519-117712798:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.3021850585938	2	541.30005	1080.58555	-0.4619	-0.00025003	2.8221	0.0015276	2.3602	0.0012776	541.3018035280136	101.86	0.96967	101.85	101.4	102.37	-0.0054474					47	21	3	0	0	0	0.15366	1	12976	12976		98.629	2.8142	1	2081100			47992	17198	33316	33368	53378	53378					0.04847797762840855
LSLDVPPLD	9	Unmodified	_LSLDVPPLD_					0	0	0			REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.7689208984375	2	484.768583	967.522613	0.25115	0.00012175	-0.3237	-0.00015692	-0.072547	-3.5168E-05	484.7682969005074	80.264	0.75146	80.057	79.757	80.508	-0.20633					46	17	3	0	0	0	0.29158	1	9617	9617		76.774	0	1	1845800	+		47993	22240	33317	33369	53379	53379					0.037552319747987895
LSLEAILPF	9	Unmodified	_LSLEAILPF_					0	0	0		ENST00000431267.2_1_12:13368036-13368078:+|nuORF	ENST00000431267.2_1_12:13368036-13368078:+|nuORF	ENST00000431267.2_1_12:13368036-13368078:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7818298339844	2	501.797143	1001.57973	-0.29321	-0.00014713	2.5556	0.0012824	2.2624	0.0011353	501.79852006980633	44.252	0.26749	44.289	44.209	44.476	0.0369					16	7	3	0	0	0	0.024487	1	4156	4156		31.955	1.4512	1	650190			47994	14185	33318	33370	53380	53380					0.07900699251194965
LSLEEFSSGL	10	Unmodified	_LSLEEFSSGL_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8035888671875	2	541.274229	1080.53391	-0.82122	-0.0004445	-1.8358	-0.00099365	-2.657	-0.0014382	541.2728185236901	96.448	0.76154	96.448	96.075	96.836	0					40	17	3	0	0	0	0.03519	1	12288	12288		34.173	0	1	178140			47995	10895	33319	33371	53381	53381					-0.0031399072170188447
LSLEEIDLY	9	Unmodified	_LSLEEIDLY_					0	0	0			REV__nc|ENSG00000139546|Q15633-2|TARBP2	REV__nc|ENSG00000139546|Q15633-2|TARBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.7847290039062	2	547.78443	1093.55431	0.48421	0.00026524	-0.72386	-0.00039652	-0.23965	-0.00013128	547.7840350724524	83.931	0.86034	83.761	83.451	84.311	-0.16915					49	19	4	0	0	0	0.22754	2	10135	10135;10147		85.359	3.0545	1	629740	+		47996	23946	33320	33372	53382;53383	53382					0.011271799381120218
LSLEEIDLY	9	Unmodified	_LSLEEIDLY_					0	0	0			REV__nc|ENSG00000139546|Q15633-2|TARBP2	REV__nc|ENSG00000139546|Q15633-2|TARBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.7838745117188	2	547.78443	1093.55431	0.033413	1.8303E-05	-0.23451	-0.00012846	-0.20109	-0.00011016	547.7842981937149	83.901	0.77396	83.762	83.506	84.28	-0.13816					55	17	4	0	0	0	0.31247	1	10119	10119		73.975	0	1	666100	+		47997	23946	33320	33372	53384	53384					0.011271799381120218
LSLEKSIII	9	Unmodified	_LSLEKSIII_					0	0	0			REV__ENSG00000177602|ENST00000325418|HASPIN	REV__ENSG00000177602|ENST00000325418|HASPIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29278564453125	2	508.323525	1014.6325	1.3653	0.00069402	-1.0274	-0.00052226	0.3379	0.00017176	508.3226712119191	74.536	0.54237	74.536	74.215	74.757	0					20	12	2	0	0	0	0.024427	1	9088	9088		34.173	0	1	68614	+		47998	27128	33321	33373	53385	53385					0.12576657314014028
LSLELKSVA	9	Unmodified	_LSLELKSVA_					0	0	0			REV__nc|ENSG00000143322|P42684-4|ABL2	REV__nc|ENSG00000143322|P42684-4|ABL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2928466796875	2	480.292225	958.569897	-0.68956	-0.00033119	0.85128	0.00040886	0.16171	7.7669E-05	480.2925776146441	65.381	1.0103	65.108	64.748	65.758	-0.27282					84	27	5	0	0	0	0.1158	1	7729	7729		107.01	16.407	1	15450000	+		47999	24225	33322	33374	53386	53386					0.0889551124580521
LSLELLQSI	9	Unmodified	_LSLELLQSI_					0	0	0		ENST00000288532.10_1_12:120941315-120941441:-|nuORF	ENST00000288532.10_1_12:120941315-120941441:-|nuORF	ENST00000288532.10_1_12:120941315-120941441:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.3059387207031	2	508.305332	1014.59611	0.74325	0.0003778	-1.125	-0.00057183	-0.38172	-0.00019403	508.30459137696585	98.321	1.1213	98.185	97.891	99.012	-0.13625					57	26	3	0	0	0	0.6238	1	12195	12195		51.193	1.6567	1	473070			48000	11771	33323	33375	53387	53387					0.08939780417290422
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.8074340820312	2	529.808239	1057.60193	-1.0657	-0.0005646	0.19088	0.00010113	-0.87479	-0.00046347	529.8083998354356	73.309	1.6822	73.309	72.952	74.635	0					122	41	5	0	0	0	0.0088231	3	8985	8948;8985;9006		274.96	19.978	1	95296000			48001	10214	33324	33376	53388;53389;53390	53389					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8082275390625	2	529.808239	1057.60193	-0.58392	-0.00030937	-0.28727	-0.0001522	-0.87119	-0.00046157	529.8081495214216	73.635	1.5973	73.364	73.009	74.606	-0.27126					131	39	5	0	0	0	0.0076046	4	8941	8941;8953;8996;9006		309.22	20.511	1	82934000			48002	10214	33324	33376	53391;53392;53393;53394	53391					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.8087768554688	2	529.808239	1057.60193	-0.36331	-0.00019249	-0.57789	-0.00030617	-0.9412	-0.00049866	529.8080070690384	73.297	1.7458	73.307	72.944	74.69	0.0096512					111	42	5	0	0	0	0.0088231	5	8912	8841;8852;8876;8888;8912		258.83	19.699	1	98416000			48003	10214	33324	33376	53395;53396;53397;53398;53399	53399					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.80810546875	2	529.808239	1057.60193	-0.3452	-0.00018289	-0.36565	-0.00019373	-0.71086	-0.00037662	529.8080422672316	73.509	0.84004	73.232	72.884	73.724	-0.2769					91	20	6	0	0	0	0.0088231	2	8642	8642;8668		243.29	19.411	1	22152000			48004	10214	33324	33376	53400;53401	53400					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.8079833984375	2	529.808239	1057.60193	-0.78142	-0.000414	0.015528	8.2267E-06	-0.76589	-0.00040578	529.8082317432481	73.502	1.0014	73.237	72.724	73.725	-0.26479					91	24	6	0	0	0	0.012006	3	8640	8640;8663;8675		291.73	20.249	1	23172000			48005	10214	33324	33376	53402;53403;53404	53402					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8087768554688	2	529.808239	1057.60193	-0.34993	-0.00018539	-0.36997	-0.00019602	-0.7199	-0.00038141	529.8080245678844	73.293	1.0508	73.103	72.633	73.683	-0.19026					95	25	5	0	0	0	0.012922	2	8652	8640;8652		218.73	19.026	1	20551000			48006	10214	33324	33376	53405;53406	53406					0.07542878928961727
LSLEQQFHVI	10	Unmodified	_LSLEQQFHVI_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	607.7789916992188	2	607.332413	1212.65027	-0.69608	-0.00042275	0.32622	0.00019812	-0.36986	-0.00022463	607.3322626324582	72.062	0.36506	71.787	71.706	72.071	-0.27509					13	8	2	0	0	0	0.03519	1	8430	8430		37.812	16.126	1	69784	+		48007	23832;36707	33325	33377	53407	53407					0.0524537256885651
LSLERLVGP	9	Unmodified	_LSLERLVGP_					0	0	0		nc|ENSG00000288550|Q8NAC3-4|IL17RC;ENST00000483582.5_1_3:9958999-9974679:+|nuORF;nc|ENSG00000288550|Q8NAC3-6|IL17RC;nc|ENSG00000288550|Q8NAC3-3|IL17RC;ENSG00000163702|ENST00000403601|IL17RC;nc|ENSG00000288550|Q8NAC3|IL17RC;ENST00000469686.5_1_3:9958999-9959435:+|nuORF;nc|ENSG00000288550|Q8NAC3-7|IL17RC;nc|ENSG00000288550|Q8NAC3-8|IL17RC;nc|ENSG00000288550|Q8NAC3-5|IL17RC	nc|ENSG00000288550|Q8NAC3-4|IL17RC;nc|ENSG00000288550|Q8NAC3-7|IL17RC	nc|ENSG00000288550|Q8NAC3-7|IL17RC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.29766845703125	2	492.297842	982.581131	-0.40023	-0.00019703	0.38168	0.0001879	-0.018548	-9.1313E-06	492.2979431040793	60.385	1.228	60.385	60.027	61.255	0					104	32	6	0	0	0	0.2508	1	6955	6955		82.241	5.4664	1	7219900			48008	7133;18818	33326	33378	53408	53408					0.08914333339953373
LSLERLVGP	9	Unmodified	_LSLERLVGP_					0	0	0		nc|ENSG00000288550|Q8NAC3-4|IL17RC;ENST00000483582.5_1_3:9958999-9974679:+|nuORF;nc|ENSG00000288550|Q8NAC3-6|IL17RC;nc|ENSG00000288550|Q8NAC3-3|IL17RC;ENSG00000163702|ENST00000403601|IL17RC;nc|ENSG00000288550|Q8NAC3|IL17RC;ENST00000469686.5_1_3:9958999-9959435:+|nuORF;nc|ENSG00000288550|Q8NAC3-7|IL17RC;nc|ENSG00000288550|Q8NAC3-8|IL17RC;nc|ENSG00000288550|Q8NAC3-5|IL17RC	nc|ENSG00000288550|Q8NAC3-4|IL17RC;nc|ENSG00000288550|Q8NAC3-7|IL17RC	nc|ENSG00000288550|Q8NAC3-7|IL17RC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2982177734375	2	492.297842	982.581131	-0.79608	-0.00039191	0.5485	0.00027002	-0.24758	-0.00012188	492.2979223686453	60.555	1.4181	60.379	60.037	61.455	-0.1761					58	34	3	0	0	0	0.39228	1	6758	6758		66.429	2.222	1	1528000			48009	7133;18818	33326	33378	53409	53409					0.08914333339953373
LSLESQIKTIL	11	Unmodified	_LSLESQIKTIL_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.7097473144531	3	415.586861	1243.73875	-0.57912	-0.00024068	-2.0093	-0.00083504	-2.5884	-0.0010757	415.58601558011236	26.482	0.72608	26.319	26.069	26.795	-0.16331					29	18	2	0	0	0	0.02476	1	1318	1318		32.034	11.002	1	186360			48010	6252	33327	33379	53410	53410					0.12663368088669813
LSLETGSCKV	10	Unmodified	_LSLETGSCKV_					0	0	0			REV__ENST00000520617.1_1_8:23174372-23177517:-|nuORF	REV__ENST00000520617.1_1_8:23174372-23177517:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7570190429688	2	518.7708	1035.52705	-0.79114	-0.00041042	-2.1531	-0.0011169	-2.9442	-0.0015274	518.7696472893031	35.768	0.18834	35.563	35.428	35.616	-0.20518					6	4	2	0	0	0	0.03519	1	2720	2720		30.318	0	1	61880	+		48011	23410	33328	33380	53411	53411					0.010703731260718996
LSLFALIAQVE	11	Unmodified	_LSLFALIAQVE_					0	0	0			REV__ENSG00000149781|ENST00000345728|FERMT3	REV__ENSG00000149781|ENST00000345728|FERMT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.9036560058594	3	401.904301	1202.69108	0.39941	0.00016052	-2.4692	-0.0009924	-2.0698	-0.00083188	401.90329791602306	30.567	0.78964	30.388	30.083	30.872	-0.17818					50	18	4	0	0	0	0.89117	1	1957	1957		52.167	2.1337	1	1951400	+		48012	24699	33329	33381	53412	53412					0.09783713888464263
LSLFFAGT	8	Unmodified	_LSLFFAGT_					0	0	0		ENSG00000197408|ENST00000324071|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	ENSG00000197408|ENST00000324071|CYP2B6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2193908691406	2	428.234179	854.453805	0.17867	7.6514E-05	1.1677	0.00050004	1.3463	0.00057655	428.2375885485609	27.496	0.60121	27.253	26.995	27.596	-0.24217					32	13	4	0	0	0	0.027866	1	1540	1540		12.207	0	1	187580			48013	9992	33330	33382	53413	53413					0.02075612465762333
LSLFFGSA	8	Unmodified	_LSLFFGSA_					0	0	0		nc|ENSG00000284609|Q8NGG8|OR8B3;nc|ENSG00000284680|Q96RD0|OR8B2	nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284609|Q8NGG8|OR8B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8184814453125	2	421.226354	840.438155	-0.70262	-0.00029596	-3.9662	-0.0016707	-4.6688	-0.0019666	421.22449714494877	27.765	0.81878	27.597	27.23	28.048	-0.16816					32	19	3	0	0	0	0.027866	1	1613	1613		3.41	0	1	194030			48014	18808	33331	33383	53414	53414					0.011553259487186551
LSLFFGSA	8	Unmodified	_LSLFFGSA_					0	0	0		nc|ENSG00000284609|Q8NGG8|OR8B3;nc|ENSG00000284680|Q96RD0|OR8B2	nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284609|Q8NGG8|OR8B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	421.226354	840.438155	-0.32199	-0.00013563	-4.22	-0.0017776	-4.542	-0.0019132	421.22454060720054	27.953	0.4978	27.708	27.463	27.961	-0.24524	0.089842	2.9587E-05	NaN	3.41	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115540			48015	18808	33331	33383							0.011553259487186551
LSLFLHDN	8	Unmodified	_LSLFLHDN_					0	0	0			REV__ENST00000511816.1_1_17:46928876-46929999:+|nuORF	REV__ENST00000511816.1_1_17:46928876-46929999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7929382324219	2	479.753267	957.491981	0.25862	0.00012407	2.5465	0.0012217	2.8051	0.0013457	479.7544145768116	45.564	0.84821	45.564	45.278	46.126	0					37	24	2	0	0	0	0.027866	1	4467	4467		45.952	15.448	1	1464700	+		48016	23655	33332	33384	53415	53415					0.011534983804153853
LSLFLLLSP	9	Unmodified	_LSLFLLLSP_					0	0	0			REV__ENST00000274853.7_1_6:30654729-30655098:-|nuORF	REV__ENST00000274853.7_1_6:30654729-30655098:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7817687988281	2	501.815336	1001.61612	-1.2676	-0.00063611	-0.76127	-0.00038202	-2.0289	-0.0010181	502.3182285146189	44.372	0.29507	44.227	44.099	44.394	-0.14471					11	8	2	0	0	0	0.024436	1	4237	4237		38.806	6.8513	1	262700	+		48017	29842	33333	33385	53416	53416					0.11537576147907203
LSLGAPPLPP	10	Unmodified	_LSLGAPPLPP_					0	0	0			REV__ENST00000303329.8_1_15:80888135-80888297:+|nuORF	REV__ENST00000303329.8_1_15:80888135-80888297:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7791748046875	2	481.289485	960.564418	-0.16892	-8.1297E-05	0.99789	0.00048028	0.82898	0.00039898	481.2896585968706	61.23	0.7072	61.017	60.567	61.274	-0.21339					45	18	3	0	0	0	0.03519	1	7019	7019		42.396	6.7778	1	1035600	+		48018	30091	33334	33386	53417	53417					0.08255832453994572
LSLGHSILL	9	Unmodified	_LSLGHSILL_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4;REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7627868652344	2	476.794935	951.575317	1.2487	0.00059536	-0.34334	-0.0001637	0.90533	0.00043166	476.79416055239676	72.037	0.52843	72.037	71.642	72.17	0					19	13	3	0	0	0	0.024381	1	8752	8752		45.952	1.8352	1	401430	+		48019	23122;35792	33335	33387	53418	53418					0.09759234828288754
LSLGHSILL	9	Unmodified	_LSLGHSILL_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4;REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.794935	951.575317	1.0027	0.00047809	-1.3575	-0.00064727	-0.35484	-0.00016918	476.7942032213606	72.346	0.57555	72.065	71.769	72.344	-0.28124	0.030479	-0.00027593	NaN	37.159	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77380	+		48020	23122;35792	33335	33387							0.09759234828288754
LSLGHSILL	9	Unmodified	_LSLGHSILL_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4;REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.794935	951.575317	0.69678	0.00033222	-1.0856	-0.00051762	-0.38884	-0.0001854	476.7943050044221	71.992	0.60622	72.002	71.765	72.371	0.0097733	-0.033053	-1.6616E-05	NaN	37.159	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110900	+		48021	23122;35792	33335	33387							0.09759234828288754
LSLGKCVR	8	Unmodified	_LSLGKCVR_					0	0	0			REV__ENST00000373625.7_1_1:32627592-32628053:+|nuORF	REV__ENST00000373625.7_1_1:32627592-32628053:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.2480163574219	2	438.260205	874.505857	-0.30371	-0.0001331	-2.8099	-0.0012315	-3.1136	-0.0013646	438.25861761687594	33.463	0.79798	33.463	33.018	33.816	0					48	21	4	0	0	0	0.027866	1	2438	2438		21.96	7.2958	1	168730	+		48022	31264	33336	33388	53419	53419					0.06358452607867093
LSLGKKHNI	9	Unmodified	_LSLGKKHNI_					0	0	0			REV__ENST00000499810.6_1_5:137844378-137844435:-|nuORF	REV__ENST00000499810.6_1_5:137844378-137844435:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.27764892578125	2	505.311284	1008.60801	0.39195	0.00019806	-2.473	-0.0012496	-2.081	-0.0010516	505.3098119179649	57.504	0.34869	57.329	57.111	57.46	-0.1749					11	8	2	0	0	0	0.02435	1	6416	6416		51.335	3.4199	1	70581	+		48023	33900	33337	33389	53420	53420					0.1040544195111579
LSLGPRPP	8	Unmodified	_LSLGPRPP_					0	0	0		ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	418.75323486328125	2	418.75307	835.491587	-0.22217	-9.3035E-05	0.45335	0.00018984	0.23118	9.6806E-05	418.7531236648737	45.534	0.99203	45.434	45.12	46.112	-0.099445					70	27	4	0	0	0	0.71833	1	4352	4352		65.803	0	1	5261700			48024	10494	33338	33390	53421	53421					0.0672612345122161
LSLGPRPP	8	Unmodified	_LSLGPRPP_					0	0	0		ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	418.75307	835.491587	-0.081155	-3.3984E-05	0.29086	0.0001218	0.2097	8.7813E-05	418.7530698681411	45.658	0.81903	45.406	45.157	45.976	-0.25252	-0.019282	-0.00013459	NaN	65.803	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5303200			48025	10494	33338	33390							0.0672612345122161
LSLGPRPP	8	Unmodified	_LSLGPRPP_					0	0	0		ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	ENSG00000213199|ENST00000349064|ASIC3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	418.75307	835.491587	-0.39554	-0.00016563	0.61253	0.0002565	0.21699	9.0866E-05	418.7532141280306	45.637	0.9895	45.435	45.13	46.119	-0.20226	0.010014	0.00013481	NaN	65.803	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6006300			48026	10494	33338	33390							0.0672612345122161
LSLGQVTKW	9	Unmodified	_LSLGQVTKW_					0	0	0			REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.29541015625	2	516.297842	1030.58113	-0.41218	-0.00021281	-2.099	-0.0010837	-2.5112	-0.0012965	516.2966569634165	36.966	1.0255	36.746	36.365	37.39	-0.2195					79	25	4	0	0	0	0.27161	1	2951	2951		79.451	2.1334	1	5890400	+		48027	28420	33339	33391	53422	53422					0.06706333339957382
LSLGRKECIG	10	Unmodified	_LSLGRKECIG_					0	0	0			REV__nc|ENSG00000169220|O43566-4|RGS14	REV__nc|ENSG00000169220|O43566-4|RGS14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2472534179688	2	538.300059	1074.58556	-0.64058	-0.00034482	-2.403	-0.0012935	-3.0436	-0.0016383	538.2985164733772	35.67	1.4044	35.479	35.019	36.423	-0.1909					52	37	2	0	0	0	0.03519	1	2710	2710		31.53	3.6476	1	329590	+		48028	26335	33340	33392	53423	53423					0.051254744912057504
LSLGRPSGL	9	Unmodified	_LSLGRPSGL_					0	0	0			REV__ENST00000574406.1_1_17:5405270-5405480:-|nuORF	REV__ENST00000574406.1_1_17:5405270-5405480:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2693176269531	2	450.269084	898.523616	-0.010534	-4.7432E-06	-0.26401	-0.00011888	-0.27455	-0.00012362	450.26886631273015	43.787	0.95152	43.818	43.486	44.437	0.030827					71	26	5	0	0	0	0.15366	1	4079	4079		98.629	10.875	1	6325000	+		48029	35445	33341	33393	53424	53424					0.07029491134380805
LSLGRRAR	8	Unmodified	_LSLGRRAR_					0	0	0		ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3;ENSG00000170122|ENST00000382500|FOXD4	ENSG00000204779|ENST00000377420|FOXD4L5	ENSG00000204779|ENST00000377420|FOXD4L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.8128356933594	2	464.793592	927.572632	-0.65802	-0.00030584	-3.1476	-0.001463	-3.8056	-0.0017688	464.79112672256156	38.173	0.58902	37.955	37.861	38.45	-0.21848					20	16	2	0	0	0	0.027866	1	3131	3131		30.504	0	1	199320			48030	9360	33342	33394	53425	53425					0.10594824213978882
LSLGRRPP	8	Unmodified	_LSLGRRPP_					0	0	0		ENST00000393640.8_1_16:70414628-70415099:-|nuORF	ENST00000393640.8_1_16:70414628-70415099:-|nuORF	ENST00000393640.8_1_16:70414628-70415099:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2535400390625	2	448.277244	894.539935	-0.041811	-1.8743E-05	3.07	0.0013762	3.0281	0.0013574	448.2780626096892	49.352	0.38997	49.199	48.864	49.254	-0.15277					15	10	2	0	0	0	0.027866	1	5065	5065		25.45	0	1	111180			48031	13455	33343	33395	53426	53426					0.08844617091131113
LSLGVQVPE	9	Unmodified	_LSLGVQVPE_					0	0	0		ENSG00000137185|ENST00000252207|ZSCAN9;nc|ENSG00000137185|O15535-2|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2684631347656	2	471.26875	940.522947	0.072451	3.4144E-05	0.071321	3.3611E-05	0.14377	6.7755E-05	471.2686955467828	67.232	1.2774	66.943	66.623	67.901	-0.28834					84	31	4	0	0	0	0.28753	1	8017	8017		77.318	5.4401	1	7855900			48032	5097	33344	33396	53427	53427					0.05030651694664812
LSLGYAASLE	10	Unmodified	_LSLGYAASLE_					0	0	0		nc|ENSG00000172375|O14523-2|C2CD2L;ENSG00000172375|ENST00000648610|C2CD2L;ENST00000525598.1_1_11:118984446-118985209:+|nuORF	nc|ENSG00000172375|O14523-2|C2CD2L	nc|ENSG00000172375|O14523-2|C2CD2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2713012695312	2	512.27149	1022.52843	-0.053609	-2.7462E-05	-1.1778	-0.00060337	-1.2314	-0.00063083	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	1.1217	1	13314	13314		21.96	0.25755	1	4944800			48033	8270	33345	33397	53428	53428					0.018063304864767815
LSLHFNWY	8	Unmodified	_LSLHFNWY_					0	0	0			REV__ENST00000344756.8_1_7:155100385-155100712:+|nuORF	REV__ENST00000344756.8_1_7:155100385-155100712:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.2900390625	2	540.269084	1078.52362	-1.0688	-0.00057746	-0.020735	-1.1202E-05	-1.0896	-0.00058866	540.2688517378906	53.126	0.50038	53.221	53.092	53.592	0.095669					15	13	2	0	0	0	0.027866	1	5639	5639		26.796	0	1	357840	+		48034	30689	33346	33398	53429	53429					-0.012505088656098451
LSLHLKVPS	9	Unmodified	_LSLHLKVPS_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.29400634765625	2	497.30821	992.601866	-0.035774	-1.7791E-05	-0.51206	-0.00025465	-0.54784	-0.00027244	497.3076867140673	81.988	0.65173	81.988	81.711	82.363	0					35	15	3	0	0	0	0.2508	1	10228	10228		82.241	10.363	1	927100	+		48035	23025	33347	33399	53430	53430					0.10526923719623937
LSLHYLLL	8	Unmodified	_LSLHYLLL_					0	0	0		ENSG00000136247|ENST00000335965|ZDHHC4;ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENSG00000136247|ENST00000335965|ZDHHC4	ENSG00000136247|ENST00000335965|ZDHHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2792053222656	2	486.299853	970.585153	-0.93913	-0.0004567	2.0524	0.00099808	1.1133	0.00054138	486.3003500794036	50.757	0.31577	50.838	50.642	50.958	0.080994					9	8	2	0	0	0	0.027866	1	5290	5290		35.201	0	1	144570			48036	5000	33348	33400	53431	53431					0.09868422833653767
LSLIFISWFFW	11	Unmodified	_LSLIFISWFFW_					0	0	0			REV__nc|ENSG00000178795|Q6W3E5|GDPD4	REV__nc|ENSG00000178795|Q6W3E5|GDPD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2863464355469	3	486.932191	1457.77475	-0.38059	-0.00018532	-4.2345	-0.0020619	-4.615	-0.0022472	487.2652302031102	41.941	0.28378	41.71	41.62	41.904	-0.23186					9	7	2	0	0	0	0.024735	1	3737	3737		31.634	7.3583	1	166370	+		48037	36980	33349	33401	53432	53432					0.06416870056159496
LSLIFSHSL	9	Unmodified	_LSLIFSHSL_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.7901611328125	2	508.792392	1015.57023	-0.25047	-0.00012743	-3.8327	-0.0019501	-4.0832	-0.0020775	508.79033427126706	60.805	0.75398	60.599	60.421	61.175	-0.20599					35	18	2	0	0	0	0.33245	1	6794	6794		71.296	4.3338	1	2191900	+		48038	24796	33350	33402	53433	53433					0.06306930965661195
LSLIIPAEAP	10	Unmodified	_LSLIIPAEAP_					0	0	0			REV__BOC|p.S480L|1|0.06|ENSG00000144857|chr3:113274579-113274579|C/T|missense_variant	REV__BOC|p.S480L|1|0.06|ENSG00000144857|chr3:113274579-113274579|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.32366943359375	2	512.307875	1022.6012	-0.25599	-0.00013115	-2.1886	-0.0011212	-2.4446	-0.0012524	512.3065832371688	20.563	0.49616	20.34	20.117	20.613	-0.22344					21	9	3	0	0	0	0.03519	1	565	565		15.642	4.1308	1	134100	+		48039	19215	33351	33403	53434	53434					0.09080084279889888
LSLILTART	9	Unmodified	_LSLILTART_					0	0	0			REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3117980957031	2	494.313492	986.612431	-0.25248	-0.0001248	4.159	0.0020558	3.9065	0.001931	494.31551950624646	80.712	0.72427	80.474	80.164	80.889	-0.23784					42	17	3	0	0	0	0.5973	1	9682	9682		52.937	5.2794	1	647120	+		48040	28771	33352	33404	53435	53435					0.11858906374038725
LSLISAMIKN	10	Unmodified	_LSLISAMIKN_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.271484375	2	545.32046	1088.62637	-0.82244	-0.00044849	-3.8387	-0.0020933	-4.6611	-0.0025418	545.3178292347316	64.311	0.39185	64.056	63.877	64.269	-0.25563					13	9	2	0	0	0	0.03519	1	7273	7273		24.519	0	1	301240			48041	5041	33353	33405	53436	53436					0.08559815810804139
LSLITEDY	8	Unmodified	_LSLITEDY_					0	0	0			REV__ENST00000481679.5_1_3:174176335-174177042:+|nuORF	REV__ENST00000481679.5_1_3:174176335-174177042:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.3157958984375	2	477.244941	952.475328	1.2927	0.00061691	4.3895	0.0020949	5.6822	0.0027118	477.246876472457	66.031	0.34645	66.031	65.837	66.184	0					18	8	3	0	0	0	0.027866	1	7824	7824		35.201	0	1	296240	+		48042	33457	33354	33406	53437	53437					-0.0028104729619826685
LSLIVTTI	8	Unmodified	_LSLIVTTI_					0	0	0			REV__ENSG00000181333|ENST00000315765|HEPHL1	REV__ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.26556396484375	2	430.278586	858.54262	-0.31776	-0.00013672	1.7401	0.00074872	1.4223	0.000612	430.27952623132427	48.744	1.1173	48.811	48.154	49.271	0.066795					53	30	3	0	0	0	0.027866	1	4885	4885		31.955	6.5047	1	981320	+		48043	27397	33355	33407	53438	53438					0.10769027705407552
LSLIVWWI	8	Unmodified	_LSLIVWWI_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7;REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7870483398438	2	515.310221	1028.60589	0.41728	0.00021503	-0.86923	-0.00044792	-0.45195	-0.00023289	515.3096045025992	59.507	0.56822	59.309	58.969	59.537	-0.19742					35	13	3	0	0	0	0.027866	1	6596	6596		44.531	0	1	810990	+		48044	25026;27099	33356	33408	53439	53439					0.0927301321332834
LSLKDQQTF	9	Unmodified	_LSLKDQQTF_					0	0	0		ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD;TRADD|p.P213L|1|0.2|ENSG00000102871|chr16:67154950-67154950|G/A|missense_variant	ENSG00000102871|ENST00000345057|TRADD	ENSG00000102871|ENST00000345057|TRADD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7651977539062	2	540.290214	1078.56587	-0.2777	-0.00015004	0.70878	0.00038295	0.43108	0.00023291	540.2901639899017	49.902	0.90579	49.622	49.086	49.992	-0.27977					35	23	3	0	0	0	0.024283	1	5029	5029		56.434	0	1	682720			48045	2435	33357	33409	53440	53440					0.029734217520854145
LSLKKLRR	8	Unmodified	_LSLKKLRR_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.31549072265625	2	507.350743	1012.68693	-0.10077	-5.1128E-05	-2.3382	-0.0011863	-2.439	-0.0012374	507.3495924193784	68.858	0.17902	68.873	68.795	68.974	0.015129					7	4	2	0	0	0	0.027866	1	8207	8207		11.511	3.8207	1	33570	+		48046	36887	33358	33410	53441	53441					0.18109713976082276
LSLKTGPF	8	Unmodified	_LSLKTGPF_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.2071228027344	2	431.755278	861.496004	-0.55306	-0.00023879	3.7115	0.0016024	3.1584	0.0013637	431.75688534931766	43.918	0.61822	43.699	43.282	43.9	-0.21939					20	16	2	0	0	0	0.027866	1	4009	4009		16.473	0	1	155040	+		48047	20710	33359	33411	53442	53442					0.05971587874148554
LSLKTGPF	8	Unmodified	_LSLKTGPF_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	431.755278	861.496004	-0.19503	-8.4205E-05	3.2249	0.0013924	3.0299	0.0013082	431.75656730492204	43.865	0.8437	43.76	43.117	43.96	-0.10468	0.065898	-0.00020822	NaN	16.473	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105500	+		48048	20710	33359	33411							0.05971587874148554
LSLKTGPF	8	Unmodified	_LSLKTGPF_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	431.755278	861.496004	-0.69273	-0.00029909	3.5588	0.0015365	2.8661	0.0012374	431.7568222618078	43.868	0.59174	43.623	43.275	43.867	-0.2444	-0.070668	8.0057E-05	NaN	16.473	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111530	+		48049	20710	33359	33411							0.05971587874148554
LSLKTSPSEIC	11	Unmodified	_LSLKTSPSEIC_					0	0	0		ENST00000447399.6_1_11:9772021-9772270:+|nuORF	ENST00000447399.6_1_11:9772021-9772270:+|nuORF	ENST00000447399.6_1_11:9772021-9772270:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3421020507812	2	589.310289	1176.60602	-0.29098	-0.00017148	-2.5891	-0.0015258	-2.8801	-0.0016973	589.3083841342752	103.65	0.39604	103.48	103.24	103.64	-0.16791					11	9	2	0	0	0	0.024749	1	12894	12894		35.152	19.145	1	52851			48050	14466	33360	33412	53443	53443					0.02478600360359451
LSLKTSRTI	9	Unmodified	_LSLKTSRTI_					0	0	0			REV__ENST00000295087.12_1_2:152670822-152684722:-|nuORF	REV__ENST00000295087.12_1_2:152670822-152684722:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.78448486328125	2	509.816399	1017.61824	-0.12624	-6.4359E-05	3.5534	0.0018116	3.4271	0.0017472	509.81806605351306	50.175	0.4883	49.895	49.657	50.145	-0.27977					27	12	3	0	0	0	0.024438	1	5076	5076		29.17	10.846	1	288910	+		48051	29971	33361	33413	53444	53444					0.11014004885726081
LSLLALTVE	9	Unmodified	_LSLLALTVE_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7927551269531	2	479.794601	957.574648	-0.76251	-0.00036585	-2.3207	-0.0011134	-3.0832	-0.0014793	479.7932960856951	30.519	0.50027	30.341	30.083	30.583	-0.17817					29	11	3	0	0	0	0.52323	1	1963	1963		57.811	7.7867	1	1239600	+		48052	24144	33362	33414	53445	53445					0.0941639538856407
LSLLALTVE	9	Unmodified	_LSLLALTVE_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7914733886719	2	479.794601	957.574648	0.094968	4.5565E-05	-3.3272	-0.0015964	-3.2322	-0.0015508	479.7929534706556	30.554	0.62782	30.404	30.14	30.768	-0.14952					40	14	4	0	0	0	0.59099	1	1938	1938		53.351	7.3995	1	1305400	+		48053	24144	33362	33414	53446	53446					0.0941639538856407
LSLLARGKK	9	Unmodified	_LSLLARGKK_					0	0	0		ENST00000370355.2_1_10:102121227-102121431:+|nuORF	ENST00000370355.2_1_10:102121227-102121431:+|nuORF	ENST00000370355.2_1_10:102121227-102121431:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.3294372558594	2	493.329476	984.6444	2.0787	0.0010255	-2.5907	-0.0012781	-0.51199	-0.00025258	493.3281727732496	24.316	1.0079	24.136	23.671	24.678	-0.18089					63	22	4	0	0	0	0.72875	1	1012	1012		44.117	1.7207	1	4478600			48054	12958	33363	33415	53447	53447					0.1514631884784876
LSLLCLGEF	9	Unmodified	_LSLLCLGEF_					0	0	0			REV__ENSG00000141456|ENST00000572293|PELP1	REV__ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2856750488281	2	497.767529	993.520504	-0.20809	-0.00010358	1.7114	0.00085186	1.5033	0.00074828	497.7669508633746	35.757	0.09901	35.559	35.476	35.575	-0.19829					4	2	2	0	0	0	0.024323	1	2718	2718		53.351	7.3995	1	102110	+		48055	24091	33364	33416	53448	53448					0.023484799653488153
LSLLELNLT	9	Unmodified	_LSLLELNLT_					0	0	0			REV__ENST00000474290.1_1_15:44069338-44069488:+|nuORF	REV__ENST00000474290.1_1_15:44069338-44069488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.30517578125	2	508.305332	1014.59611	-0.22438	-0.00011405	-0.18798	-9.5553E-05	-0.41236	-0.00020961	508.30510884182195	98.357	0.98793	98.192	98	98.988	-0.16521					51	22	3	0	0	0	0.67687	1	12218	12218		47.657	0	1	513780	+		48056	33269	33365	33417	53449	53449					0.08939780417267684
LSLLGEEQI	9	Unmodified	_LSLLGEEQI_					0	0	0		ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	ENSG00000137955|ENST00000319942|RABGGTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2799377441406	2	501.279315	1000.54408	-1.1445	-0.00057372	1.4214	0.00071251	0.27687	0.00013879	501.2798741746726	90.575	0.7959	90.575	90.255	91.051	0					40	18	3	0	0	0	0.15366	1	11453	11453		98.629	5.4339	1	1472200			48057	5180	33366	33418	53450	53450					0.04382617003534506
LSLLLLALPV	10	Unmodified	_LSLLLLALPV_					0	0	0		nc|ENSG00000095917|Q9BZJ3-2|TPSD1;ENSG00000095917|ENST00000211076|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.2466430664062	2	526.359911	1050.70527	-0.89659	-0.00047193	3.4101	0.001795	2.5136	0.001323	526.3616763391432	38.387	0.74701	38.166	37.832	38.579	-0.22148					38	20	3	0	0	0	0.03519	1	3139	3139		19.997	4.355	1	189130			48058	2040	33367	33419	53451	53451					0.18194411107378983
LSLLLVPMY	9	Unmodified	_LSLLLVPMY_					0	0	0		ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2860717773438	2	524.809196	1047.60384	-0.080546	-4.2271E-05	3.6057	0.0018923	3.5252	0.00185	524.8108550068876	54.801	0.43404	54.57	54.387	54.821	-0.23087					25	11	3	0	0	0	0.024535	1	5821	5821		33.516	15.191	1	569300			48059	10519	33368	33420	53452	53452					0.08194216413198774
LSLLPLTEP	9	Unmodified	_LSLLPLTEP_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;ENST00000552391.1_1_12:49424296-49425140:-|nuORF	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7939453125	2	491.794601	981.574648	0.21268	0.00010459	-1.0527	-0.00051771	-0.84002	-0.00041312	491.79293057462826	62.771	0.56927	62.825	62.557	63.126	0.054104					20	13	2	0	0	0	0.024381	1	7263	7263		37.159	5.2042	1	276750			48060	7698	33369	33421	53453	53453					0.08312395388566074
LSLLRDALV	9	Unmodified	_LSLLRDALV_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7879943847656	2	500.313492	998.612431	0.84691	0.00042372	-0.56573	-0.00028304	0.28118	0.00014068	500.313285126895	71.217	0.39249	70.928	70.761	71.153	-0.28857					12	9	2	0	0	0	0.024484	1	8614	8614		45.972	21.769	1	105750			48061	1037	33370	33422	53454	53454					0.11306906374022674
LSLLRSPEVV	10	Unmodified	_LSLLRSPEVV_					0	0	0		ENST00000472888.1_1_13:37399651-37402473:+|nuORF;ENSG00000133111|ENST00000255476|RFXAP	ENST00000472888.1_1_13:37399651-37402473:+|nuORF	ENST00000472888.1_1_13:37399651-37402473:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.811767578125	2	556.837331	1111.66011	-0.68204	-0.00037979	-2.6975	-0.0015021	-3.3795	-0.0018818	556.8357427861764	21.432	0.34407	21.432	21.146	21.491	0					9	6	2	0	0	0	0.03519	1	662	662		14.865	3.3539	1	14104			48062	4685	33371	33423	53455	53455					0.108745605742115
LSLLRSPEVV	10	Unmodified	_LSLLRSPEVV_					0	0	0		ENST00000472888.1_1_13:37399651-37402473:+|nuORF;ENSG00000133111|ENST00000255476|RFXAP	ENST00000472888.1_1_13:37399651-37402473:+|nuORF	ENST00000472888.1_1_13:37399651-37402473:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	556.837331	1111.66011	-0.66363	-0.00036953	-2.1101	-0.001175	-2.7737	-0.0015445	556.8363718612503	21.385	0.39033	21.295	21.109	21.499	-0.090094	-0.072786	0.00040281	NaN	20.947	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11944			48063	4685	33371	33423							0.108745605742115
LSLLSPAPGHA	11	Unmodified	_LSLLSPAPGHA_					0	0	0		ENST00000570355.1_1_17:79663642-79664026:+|nuORF;ENST00000571647.1_1_17:79663564-79664029:+|nuORF	ENST00000570355.1_1_17:79663642-79664026:+|nuORF	ENST00000570355.1_1_17:79663642-79664026:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7981567382812	2	531.800749	1061.58694	-0.72033	-0.00038307	-2.4819	-0.0013199	-3.2022	-0.0017029	531.7989480358904	101.65	1.9571	101.65	100.7	102.65	0					70	44	3	0	0	0	0.84811	1	13048	13048		54.776	1.8396	1	370770			48064	17029	33372	33424	53456	53456					0.058614318515992636
LSLLVSRLI	9	Unmodified	_LSLLVSRLI_					0	0	0			REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2958679199219	2	507.33951	1012.66447	-0.54835	-0.0002782	0.78276	0.00039712	0.23441	0.00011893	507.3397025142706	27.793	0.45957	27.789	27.581	28.04	-0.0042019					16	11	2	0	0	0	0.024535	1	1523	1523		18.324	0	1	110780	+		48065	35989	33373	33425	53457	53457					0.15864069787801327
LSLLVSRLI	9	Unmodified	_LSLLVSRLI_					0	0	0			REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.33951	1012.66447	-0.85529	-0.00043392	0.78794	0.00039975	-0.067354	-3.4171E-05	507.33983117526975	27.886	0.38514	27.886	27.689	28.074	0	0.145	0.00012715	NaN	18.324	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106030	+		48066	35989	33373	33425							0.15864069787801327
LSLLVSRLI	9	Unmodified	_LSLLVSRLI_					0	0	0			REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	REV__ENST00000609928.5_3_1:179821820-179834609:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.33951	1012.66447	-0.64956	-0.00032955	0.51632	0.00026195	-0.13324	-6.7598E-05	507.33964616961714	27.733	0.37966	27.814	27.571	27.951	0.081293	0.072875	-0.00014845	NaN	18.324	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81948	+		48067	35989	33373	33425							0.15864069787801327
LSLNPRLIA	9	Unmodified	_LSLNPRLIA_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.771728515625	2	498.813659	995.612765	-0.62869	-0.0003136	3.1604	0.0015765	2.5317	0.0012629	498.81603952870466	31.357	0.21724	31.205	31.124	31.342	-0.15231					6	5	2	0	0	0	0.024541	1	2061	2061		24.203	9.3379	1	75447	+		48068	27289	33374	33426	53458	53458					0.11478326093902069
LSLPCTLNL	9	Unmodified	_LSLPCTLNL_					0	0	0		nc|ENSG00000090686|Q86UV5-8|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;USP48|p.V594Wfs*12|1|0.1|ENSG00000090686|chr1:21721150-21721150|C/-|frameshift_variant;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79229736328125	2	487.272978	972.531403	-0.28718	-0.00013993	-2.5163	-0.0012261	-2.8035	-0.0013661	487.27120606959863	78.637	0.50053	78.637	78.282	78.783	0					19	11	2	0	0	0	0.017396	1	9730	9730		113.41	47.608	1	290430			48069	18108	33375	33427	53459	53459					0.044038823396363114
LSLPCTLNL	9	Unmodified	_LSLPCTLNL_					0	0	0		nc|ENSG00000090686|Q86UV5-8|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48;USP48|p.V594Wfs*12|1|0.1|ENSG00000090686|chr1:21721150-21721150|C/-|frameshift_variant;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.272978	972.531403	-0.051697	-2.519E-05	-3.2025	-0.0015605	-3.2542	-0.0015857	487.27120732113826	78.772	0.60167	78.517	78.17	78.772	-0.25471	-0.019647	-0.00027377	NaN	113.41	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152980			48070	18108	33375	33427							0.044038823396363114
LSLPDRRH	8	Unmodified	_LSLPDRRH_					0	0	0		ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2845153808594	2	497.283057	992.551562	-0.056963	-2.8327E-05	-0.63144	-0.00031401	-0.68841	-0.00034233	497.2827894016265	81.853	1.2441	81.853	81.506	82.75	0					59	29	3	0	0	0	0.35998	1	10214	10214		102.77	10.583	1	2309000			48071	16133	33376	33428	53460	53460					0.05498814114469042
LSLPDRRH	8	Unmodified	_LSLPDRRH_					0	0	0		ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2843322753906	2	497.283057	992.551562	0.28539	0.00014192	-0.89636	-0.00044574	-0.61097	-0.00030383	497.28264257192404	81.972	1.1587	81.862	81.523	82.682	-0.11006					52	27	3	0	0	0	0.38451	1	10193	10193		99.375	11.621	1	2135100			48072	16133	33376	33428	53461	53461					0.05498814114469042
LSLPDRRH	8	Unmodified	_LSLPDRRH_					0	0	0		ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2837829589844	2	497.283057	992.551562	-0.32728	-0.00016275	-1.6824	-0.00083664	-2.0097	-0.00099939	497.2829453005821	81.782	1.2065	81.807	81.495	82.701	0.025719					65	28	4	0	0	0	0.53523	2	10126	10126;10139		82.305	2.6769	1	2453000			48073	16133	33376	33428	53462;53463	53462					0.05498814114469042
LSLPFAAPL	9	Unmodified	_LSLPFAAPL_					0	0	0			REV__ENST00000534329.1_1_11:17098694-17099257:-|nuORF	REV__ENST00000534329.1_1_11:17098694-17099257:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2537841796875	2	464.778754	927.542954	0.43234	0.00020094	-3.3181	-0.0015422	-2.8857	-0.0013412	464.77612092081876	78.555	0.33331	78.571	78.315	78.649	0.015907					11	7	2	0	0	0	0.024412	1	9656	9656		24.203	11.244	1	54298	+		48074	34632	33377	33429	53464	53464					0.07628447425270224
LSLPFSGDGG	10	Unmodified	_LSLPFSGDGG_					0	0	0			REV__ENST00000282020.8_1_4:93225764-93511291:+|nuORF	REV__ENST00000282020.8_1_4:93225764-93511291:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.7561950683594	2	475.234907	948.455261	1.4639	0.0006957	0.85723	0.00040739	2.3211	0.0011031	475.23550149646104	23.218	0.36305	23.027	22.804	23.167	-0.19117					11	7	2	0	0	0	0.03519	1	852	852		19.997	0	1	31641	+		48075	29887	33378	33430	53465	53465					-0.02102798236126091
LSLPGLPPGW	10	Unmodified	_LSLPGLPPGW_					0	0	0		nc|ENSG00000213889|Q8N819-2|PPM1N;ENSG00000213889|ENST00000451287|PPM1N	nc|ENSG00000213889|Q8N819-2|PPM1N	nc|ENSG00000213889|Q8N819-2|PPM1N	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.793212890625	2	518.794935	1035.57532	-1.3156	-0.00068252	-3.5991	-0.0018672	-4.9147	-0.0025497	518.793110653343	51.777	1.4702	51.508	51.203	52.673	-0.26903					105	38	5	0	0	0	0.96965	1	5371	5371		49.442	2.9848	1	22848000			48076	10527	33379	33431	53466	53466					0.058952348282673483
LSLPPCLW	8	Unmodified	_LSLPPCLW_					0	0	0			REV__ENST00000400762.7_1_4:1193492-1195154:-|nuORF	REV__ENST00000400762.7_1_4:1193492-1195154:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2789611816406	2	464.751682	927.48881	-0.68812	-0.0003198	-1.7322	-0.00080503	-2.4203	-0.0011248	464.75117442429564	81.393	0.32664	81.262	81.176	81.502	-0.13075					9	7	2	0	0	0	0.027866	1	10092	10092		52.299	0	1	53807	+		48077	31852	33380	33432	53467	53467					0.022165320020462786
LSLPSPVEL	9	Unmodified	_LSLPSPVEL_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7972412109375	2	477.778951	953.543348	0.41015	0.00019596	-2.1002	-0.0010034	-1.69	-0.00080746	477.7778920409934	96.335	0.24984	96.335	96.234	96.484	0					7	5	2	0	0	0	0.024323	1	12302	12302		44.117	9.9443	1	47083			48078	8497	33381	33433	53468	53468					0.06471822354478718
LSLPSSWDYSK	11	Unmodified	_LSLPSSWDYSK_					0	0	0		ENST00000596373.1_1_19:53686195-53696578:-|nuORF	ENST00000596373.1_1_19:53686195-53696578:-|nuORF	ENST00000596373.1_1_19:53686195-53696578:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2364196777344	3	428.215316	1281.62412	-0.42595	-0.0001824	3.8129	0.0016327	3.387	0.0014503	428.21666982015887	29.503	1.1956	29.581	28.979	30.174	0.078344					81	29	4	0	0	0	0.024726	1	1794	1794		15.337	3.4051	1	573170			48079	17432	33382	33434	53469	53469					-0.00542941393291585
LSLPTRAW	8	Unmodified	_LSLPTRAW_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-5|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2720031738281	2	472.271627	942.528701	-0.95259	-0.00044988	0.74057	0.00034975	-0.21202	-0.00010013	472.27189120599166	65.046	0.8222	64.783	64.417	65.239	-0.2626					52	21	4	0	0	0	0.74904	1	7653	7653		63.306	2.3343	1	4554200			48080	3961	33383	33435	53470	53470					0.055137949969775946
LSLPWLPSL	9	Unmodified	_LSLPWLPSL_					0	0	0			REV__ENSG00000269526|ENST00000602168|ERVV-1	REV__ENSG00000269526|ENST00000602168|ERVV-1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3035888671875	2	513.305136	1024.59572	-0.63729	-0.00032712	-3.7764	-0.0019384	-4.4137	-0.0022656	513.3030355482732	63.128	0.79259	63.128	62.729	63.522	0					52	20	3	0	0	0	0.59099	1	7377	7377		53.351	7.3995	1	3903100	+		48081	29158	33384	33436	53471	53471					0.08440405488090619
LSLQAKQLV	9	Unmodified	_LSLQAKQLV_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3128967285156	2	500.313492	998.612431	-0.090474	-4.5266E-05	-0.4003	-0.00020028	-0.49077	-0.00024554	500.31332521540634	76.17	3.2658	76.17	75.769	79.035	0					276	79	5	0	0	0	0.29158	1	9353	9353		76.774	1.7308	1	55910000	+		48082	22645	33385	33437	53472	53472					0.11306906374045411
LSLQAKQLV	9	Unmodified	_LSLQAKQLV_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.31304931640625	2	500.313492	998.612431	0.31324	0.00015672	-0.82928	-0.0004149	-0.51604	-0.00025818	500.3131305903417	76.175	3.4375	76.187	75.788	79.226	0.011642					264	83	5	0	0	0	0.2508	1	9365	9365		82.241	10.363	1	55383000	+		48083	22645	33385	33437	53473	53473					0.11306906374045411
LSLQKLLL	8	Unmodified	_LSLQKLLL_					0	0	0			REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.31524658203125	2	464.315503	926.616454	-0.20678	-9.6013E-05	0.13566	6.2987E-05	-0.071129	-3.3026E-05	464.3154223350025	47.686	0.83657	47.589	47.349	48.186	-0.097553					56	22	3	0	0	0	0.30053	1	4691	4691		111.65	5.2331	1	3038000	+		48084	30289	33386	33438	53474	53474					0.15020995867757847
LSLQKLLL	8	Unmodified	_LSLQKLLL_					0	0	0			REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.3155517578125	2	464.315503	926.616454	-0.45647	-0.00021195	0.22829	0.000106	-0.22818	-0.00010595	464.3154610020975	47.99	0.87106	47.714	47.421	48.292	-0.27598					61	23	4	0	0	0	0.2822	2	4721	4721;4734		119.56	5.2036	1	3053800	+		48085	30289	33386	33438	53475;53476	53475					0.15020995867757847
LSLQKLLL	8	Unmodified	_LSLQKLLL_					0	0	0			REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.315185546875	2	464.315503	926.616454	0.14422	6.6962E-05	-0.30114	-0.00013982	-0.15692	-7.2862E-05	464.31518869484523	47.779	0.83863	47.592	47.355	48.193	-0.18684					50	22	3	0	0	0	0.33369	2	4704	4690;4704		106.42	8.9425	1	2969300	+		48086	30289	33386	33438	53477;53478	53478					0.15020995867757847
LSLQLAVRV	9	Unmodified	_LSLQLAVRV_					0	0	0			REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7918701171875	2	499.821484	997.628415	-0.70968	-0.00035471	-0.068165	-3.407E-05	-0.77785	-0.00038878	499.82128585399795	29.661	0.80463	29.416	29.142	29.947	-0.24524					36	18	3	0	0	0	0.024405	1	1826	1826		35.618	10.168	1	537480	+		48087	32081	33387	33439	53479	53479					0.1295061261095043
LSLQSACSY	9	Unmodified	_LSLQSACSY_					0	0	0			REV__nc|ENSG00000291239|Q3ZCX4-3|ZNF568	REV__nc|ENSG00000291239|Q3ZCX4-3|ZNF568	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	486.228768	970.442982	1.0539	0.00051243	-3.5071	-0.0017053	-2.4532	-0.0011928	486.2264879901057	54.8	0.98016	54.593	54.197	55.177	-0.20613					81	26	5	0	0	0	0.2508	1	5825	5825		82.241	5.3939	1	2675200	+		48088	37239	33388	33440	53480	53480					-0.04342157970836524
LSLRAQQTL	9	Unmodified	_LSLRAQQTL_					0	0	0			REV__ENSG00000186509|ENST00000335397|OR9Q1	REV__ENSG00000186509|ENST00000335397|OR9Q1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3237915039062	2	515.306198	1028.59784	-0.9774	-0.00050366	4.4533	0.0022948	3.4759	0.0017912	515.3079662083162	40.557	0.91	40.58	40.237	41.147	0.023006					70	25	4	0	0	0	0.024344	1	3608	3608		45.972	19.279	1	987450	+		48089	27863	33389	33441	53481	53481					0.08468834225891442
LSLRDLKV	8	Unmodified	_LSLRDLKV_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2712707519531	2	472.300384	942.586216	0.52144	0.00024628	-0.8517	-0.00040226	-0.33026	-0.00015598	472.2998066397777	64.421	0.59927	64.466	64.189	64.788	0.045502					22	15	2	0	0	0	0.027866	1	7545	7545		51.335	1.3109	1	220190			48090	10472	33390	33442	53482	53482					0.112626372025602
LSLRDLKV	8	Unmodified	_LSLRDLKV_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.300384	942.586216	0.61626	0.00029106	-0.61467	-0.00029031	0.0015888	7.5038E-07	472.2997486156002	64.452	0.59259	64.452	64.133	64.725	0	-0.0052959	-3.3875E-05	NaN	51.335	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271610			48091	10472	33390	33442							0.112626372025602
LSLRDLKV	8	Unmodified	_LSLRDLKV_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.300384	942.586216	-0.51682	-0.0002441	-0.11212	-5.2955E-05	-0.62894	-0.00029705	472.3004257027364	64.715	0.49204	64.453	64.23	64.722	-0.2626	-0.0042456	0.00044083	NaN	51.335	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192030			48092	10472	33390	33442							0.112626372025602
LSLRDVALL	9	Unmodified	_LSLRDVALL_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2895812988281	2	500.313492	998.612431	-0.46785	-0.00023407	0.2437	0.00012192	-0.22415	-0.00011215	500.3133096839419	83.244	0.46924	83.244	83.008	83.477	0					16	10	2	0	0	0	0.024323	1	10414	10414		44.117	0	1	118000	+		48093	26206	33391	33443	53483	53483					0.11306906374034043
LSLRENSI	8	Unmodified	_LSLRENSI_					0	0	0		ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2635192871094	2	466.263999	930.513445	-0.21159	-9.8656E-05	-1.2489	-0.00058231	-1.4605	-0.00068097	466.2634922538418	37.863	2.0014	37.684	37.363	39.365	-0.17929					143	55	5	0	0	0	0.30053	1	3076	3076		111.65	6.9017	1	78690000			48094	7761	33392	33444	53484	53484					0.04540883409140406
LSLRENSI	8	Unmodified	_LSLRENSI_					0	0	0		ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	466.263999	930.513445	-1.0918	-0.00050906	-0.32943	-0.0001536	-1.4212	-0.00066266	466.2639071491436	37.918	2.4894	37.699	36.989	39.479	-0.21848	0.012376	0.00031211	NaN	111.65	154	67	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65965000			48095	7761	33392	33444							0.04540883409140406
LSLRHKVPVP	10	Unmodified	_LSLRHKVPVP_					0	0	0		ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	ENSG00000143157|ENST00000367876|POGK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.7538452148438	2	573.361308	1144.70806	-0.25296	-0.00014503	-0.35942	-0.00020608	-0.61238	-0.00035111	573.360882142272	52.406	0.58591	52.22	51.888	52.474	-0.18527					28	14	3	0	0	0	0.03519	1	5422	5422		26.693	10.22	1	353290			48096	5614	33393	33445	53485	53485					0.14149679284946615
LSLRKLVAD	9	Unmodified	_LSLRKLVAD_					0	0	0			REV__ENSG00000185274|ENST00000333538|GALNT17	REV__ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2959289550781	2	507.818941	1013.62333	-0.38811	-0.00019709	0.13607	6.9099E-05	-0.25204	-0.00012799	507.8189182052305	60.048	0.67028	59.848	59.616	60.286	-0.20016					39	17	3	0	0	0	0.024344	1	6864	6864		37.812	7.4938	1	2197900	+		48097	27749	33394	33446	53486	53486					0.1170630874833023
LSLRLLEK	8	Unmodified	_LSLRLLEK_					0	0	0		ENST00000310924.6_1_17:77913861-77913975:-|nuORF	ENST00000310924.6_1_17:77913861-77913975:-|nuORF	ENST00000310924.6_1_17:77913861-77913975:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	486.316035	970.617516	1.0718	0.00052124	-1.7531	-0.00085254	-0.68124	-0.0003313	486.3150170861257	54.585	0.37375	54.379	54.237	54.611	-0.20613					18	9	2	0	0	0	0.027866	1	5825	5825		51.335	0	1	175310			48098	12070	33395	33447	53487	53487					0.13103210236658924
LSLRQSVFL	9	Unmodified	_LSLRQSVFL_					0	0	0		ENST00000548804.5_1_12:58003340-58003568:+|nuORF	ENST00000548804.5_1_12:58003340-58003568:+|nuORF	ENST00000548804.5_1_12:58003340-58003568:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.817138671875	2	531.818941	1061.62333	0.16751	8.9087E-05	-4.1721	-0.0022188	-4.0045	-0.0021297	531.8166393339519	85.223	2.6076	85.223	83.692	86.3	0					165	61	4	0	0	0	0.72494	1	10668	10668		44.377	5.1244	1	961570			48099	16557	33396	33448	53488	53488					0.09498308748334239
LSLRRCHPY	9	Unmodified	_LSLRRCHPY_					0	0	0			REV__ENST00000521141.1_1_8:22613398-22614593:+|nuORF	REV__ENST00000521141.1_1_8:22613398-22614593:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.28662109375	2	572.805842	1143.59713	-0.087914	-5.0358E-05	0.96034	0.00055009	0.87242	0.00049973	572.8052189091037	52.937	1.0267	52.747	52.47	53.496	-0.18982					42	26	3	0	0	0	0.023635	1	5475	5475		47.657	0	1	125530	+		48100	34310	33397	33449	53489	53489					0.03107716305203212
LSLRRPGG	8	Unmodified	_LSLRRPGG_					0	0	0			REV__nc|ENSG00000103326|O75808-2|CAPN15	REV__nc|ENSG00000103326|O75808-2|CAPN15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2607421875	2	428.261594	854.508634	0.60688	0.0002599	-0.36221	-0.00015512	0.24467	0.00010478	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.0198	1	11170	11170		34.173	3.6689	1	63872000	+		48101	19245	33398	33450	53490	53490					0.07556044057048439
LSLRSIVDF	9	Unmodified	_LSLRSIVDF_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.305419921875	2	525.303124	1048.5917	-0.41235	-0.00021661	0.16365	8.5968E-05	-0.2487	-0.00013064	525.3030711631365	65.62	0.65791	65.369	65.108	65.766	-0.25112					44	15	4	0	0	0	0.56934	1	7493	7493		54.776	1.8396	1	1878000			48102	8932	33399	33451	53491	53491					0.06934315994362805
LSLSGQQEL	9	Unmodified	_LSLSGQQEL_					0	0	0		ENSG00000186766|ENST00000388920|FOXI2	ENSG00000186766|ENST00000388920|FOXI2	ENSG00000186766|ENST00000388920|FOXI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.761474609375	2	487.761289	973.508025	1.0772	0.00052542	-1.2774	-0.00062307	-0.20021	-9.7656E-05	487.7606279336297	59.499	0.97821	59.299	58.923	59.901	-0.20016					65	26	3	0	0	0	0.027092	1	6768	6768		143.89	2.3663	1	7366000			48103	9574	33400	33452	53492	53492					0.02021159826665553
LSLSKFELD	9	Unmodified	_LSLSKFELD_					0	0	0			REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.2467651367188	2	526.28714	1050.55973	-0.95746	-0.0005039	-0.052837	-2.7808E-05	-1.0103	-0.00053171	526.2870365936317	38.298	0.26613	38.119	37.971	38.237	-0.17929					11	7	2	0	0	0	0.024447	1	3128	3128		40.778	1.7567	1	106650	+		48104	28649	33401	33453	53493	53493					0.03646903520575506
LSLSLLFGSL	10	Unmodified	_LSLSLLFGSL_					0	0	0			REV__ENST00000475978.1_1_1:249115348-249115456:-|nuORF	REV__ENST00000475978.1_1_1:249115348-249115456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.29638671875	2	525.3157	1048.61685	-0.79566	-0.00041797	-0.84961	-0.00044631	-1.6453	-0.00086429	525.314955176437	80.779	1.0094	80.803	80.361	81.37	0.023911					40	24	2	0	0	0	0.03519	1	9992	9992		32.812	0	1	226590	+		48105	33303	33402	33454	53494	53494					0.0944837079696299
LSLSLSCSLF	10	Unmodified	_LSLSLSCSLF_					0	0	0		ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	ENST00000366481.3_1_1:248040148-248040412:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7820434570312	2	535.283543	1068.55253	-0.64872	-0.00034725	0.83042	0.00044451	0.1817	9.7261E-05	535.2841747686513	41.245	0.9218	41.017	40.473	41.395	-0.2278					41	23	3	0	0	0	0.03519	1	3617	3617		29.15	13.508	1	1459300			48106	12815	33403	33455	53495	53495					0.020998476484919593
LSLSTAKAL	9	Unmodified	_LSLSTAKAL_					0	0	0		ENST00000434640.5_2_6:3118630-3119634:+|nuORF	ENST00000434640.5_2_6:3118630-3119634:+|nuORF	ENST00000434640.5_2_6:3118630-3119634:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.24554443359375	2	452.279118	902.543683	0.8006	0.0003621	-0.67683	-0.00030611	0.12378	5.5983E-05	452.27868124854365	50.916	0.98621	50.804	50.525	51.511	-0.11163					61	25	4	0	0	0	0.024381	1	5306	5306		45.952	0	1	2537800			48107	14250	33404	33456	53496	53496					0.0885124207430863
LSLSWKLKD	9	Unmodified	_LSLSWKLKD_					0	0	0		ENST00000382080.5_1_8:15095190-15095259:-|nuORF	ENST00000382080.5_1_8:15095190-15095259:-|nuORF	ENST00000382080.5_1_8:15095190-15095259:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165893554688	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.45795	1	11488	11488		62.107	1.9892	1	11705000			48108	13355	33405	33457	53497	53497					0.08222889028479585
LSLSWLLT	8	Unmodified	_LSLSWLLT_					0	0	0		ENST00000379619.5_1_2:28636364-28636718:+|nuORF	ENST00000379619.5_1_2:28636364-28636718:+|nuORF	ENST00000379619.5_1_2:28636364-28636718:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2638854980469	2	466.776211	931.537869	-0.3018	-0.00014087	-4.2666	-0.0019915	-4.5684	-0.0021324	466.77409416406806	30.547	1.007	30.303	29.905	30.911	-0.24415					46	23	3	0	0	0	0.027866	1	1975	1975		24.203	9.3379	1	911410			48109	13273	33406	33458	53498	53498					0.06936143562666075
LSLSWPGPS	9	Unmodified	_LSLSWPGPS_					0	0	0			REV__ENST00000304032.12_1_2:237035829-237035973:+|nuORF	REV__ENST00000304032.12_1_2:237035829-237035973:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2952575683594	2	472.247818	942.481082	0.27877	0.00013165	0.50433	0.00023817	0.7831	0.00036982	472.2478920298629	55.163	1.0759	55.012	54.409	55.485	-0.15036					69	30	3	0	0	0	0.024381	1	6077	6077		15.642	0	1	1163700	+		48110	30099	33407	33459	53499	53499					0.007540960061419355
LSLSWRLF	8	Unmodified	_LSLSWRLF_					0	0	0		nc|ENSG00000140009|Q92731-4|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2690734863281	2	511.295102	1020.57565	-0.71032	-0.00036318	2.3333	0.001193	1.623	0.00082983	511.2963294608598	45.119	0.38386	45.119	44.862	45.246	0					15	10	2	0	0	0	0.027866	1	4343	4343		26.796	7.4361	1	203480			48111	18331	33408	33460	53500	53500					0.06618654548128688
LSLTDSLFI	9	Unmodified	_LSLTDSLFI_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.78387451171875	2	504.784233	1007.55391	-0.34095	-0.00017211	-0.68198	-0.00034425	-1.0229	-0.00051636	504.7838187807542	98.035	1.7286	97.87	97.125	98.853	-0.1652					69	37	2	0	0	0	0.59099	1	12130	12130		53.351	2.016	1	974710	+		48112	19076	33409	33461	53501	53501					0.05043805008892832
LSLTEEDLN	9	Unmodified	_LSLTEEDLN_					0	0	0		ENSG00000140948|ENST00000671377|ZCCHC14;nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2401733398438	2	517.256037	1032.49752	0.0054245	2.8059E-06	1.1718	0.00060611	1.1772	0.00060891	517.256627432016	78.004	1.0709	77.848	77.617	78.688	-0.15591					39	24	3	0	0	0	0.024397	1	9375	9375		39.253	7.298	1	571220			48113	5454	33410	33462	53502	53502					-0.017428676184181313
LSLTIWAR	8	Unmodified	_LSLTIWAR_					0	0	0		ENST00000372189.7_1_9:134453434-134453743:-|nuORF	ENST00000372189.7_1_9:134453434-134453743:-|nuORF	ENST00000372189.7_1_9:134453434-134453743:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2865905761719	2	480.287277	958.560001	-0.10628	-5.1045E-05	0.91754	0.00044068	0.81126	0.00038964	480.2880051124295	65.834	0.64575	65.864	65.552	66.197	0.030098					56	16	4	0	0	0	0.87148	1	7719	7719		53.351	0	1	6345600			48114	13031	33411	33463	53503	53503					0.07906368031081001
LSLTKEEEL	9	Unmodified	_LSLTKEEEL_					0	0	0		ENSG00000168495|ENST00000306433|POLR3D	ENSG00000168495|ENST00000306433|POLR3D	ENSG00000168495|ENST00000306433|POLR3D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3002319335938	2	531.289879	1060.56521	0.55946	0.00029724	0.59026	0.0003136	1.1497	0.00061084	531.2899400914998	97.403	0.44563	97.279	97.063	97.508	-0.12368					14	9	2	0	0	0	0.82115	1	12060	12060		37.812	0	1	44664			48115	7830	33412	33464	53504	53504					0.037345823123814625
LSLTLLLS	8	Unmodified	_LSLTLLLS_					0	0	0		ENST00000429243.6_1_12:53839881-53840088:+|nuORF;ENST00000433358.5_1_16:450186-450339:+|nuORF;ENST00000480384.1_1_6:31827498-31827900:-|nuORF	ENST00000429243.6_1_12:53839881-53840088:+|nuORF	ENST00000429243.6_1_12:53839881-53840088:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.26617431640625	2	430.278586	858.54262	0.51322	0.00022083	3.6866	0.0015863	4.1998	0.0018071	430.28084137356433	20.783	0.29177	20.615	20.444	20.736	-0.16774					7	5	2	0	0	0	0.027866	1	594	594		18.324	0	1	6947.4			48116	14139	33413	33465	53505	53505					0.1076902770543029
LSLTRRLT	8	Unmodified	_LSLTRRLT_					0	0	0		ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2887878417969	2	480.303458	958.592364	0.044989	2.1608E-05	3.1614	0.0015185	3.2064	0.0015401	480.3047003151537	66.234	0.57495	65.953	65.598	66.173	-0.28148					17	14	2	0	0	0	0.027866	1	7837	7837		47.657	0	1	115640			48117	11785	33414	33466	53506	53506					0.1114115543407479
LSLTRRLT	8	Unmodified	_LSLTRRLT_					0	0	0		ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.97918701171875	2	480.303458	958.592364	2.8608	0.0013741	-2.8896	-0.0013879	-0.028718	-1.3793E-05	480.30203425199886	18.741	0.29873	18.499	18.324	18.623	-0.24256					12	5	3	0	0	0	0.027866	1	325	325		38.806	0	1	45517			48118	11785	33414	33466	53507	53507					0.1114115543407479
LSLTRRLT	8	Unmodified	_LSLTRRLT_					0	0	0		ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.303458	958.592364	1.0987	0.0005277	-0.8158	-0.00039183	0.28288	0.00013587	480.30304090935044	18.674	0.39628	18.517	18.247	18.643	-0.15637	0.057821	0.0013113	NaN	38.806	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75691			48119	11785	33414	33466							0.1114115543407479
LSLTRRLT	8	Unmodified	_LSLTRRLT_					0	0	0		ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	ENST00000290573.6_1_2:75101524-75101560:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.303458	958.592364	0.24911	0.00011965	-0.59067	-0.0002837	-0.34155	-0.00016405	480.30315399656445	18.738	0.39612	18.535	18.262	18.658	-0.20371	0.074916	0.0015275	NaN	38.806	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91272			48120	11785	33414	33466							0.1114115543407479
LSLTTPKAQ	9	Unmodified	_LSLTTPKAQ_					0	0	0			REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	REV__nc|ENSG00000109819|Q9UBK2-9|PPARGC1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7821960449219	2	479.782025	957.549496	0.012291	5.8972E-06	-0.037785	-1.8129E-05	-0.025494	-1.2232E-05	479.78185606659406	57.591	0.677	57.4	57.112	57.789	-0.19018					54	17	4	0	0	0	0.32811	1	6286	6286		71.877	0.49956	1	5899400	+		48121	21819	33415	33467	53508	53508					0.0690234058599799
LSLTWARL	8	Unmodified	_LSLTWARL_					0	0	0			REV__ENST00000359890.7_2_14:23370637-23370934:-|nuORF	REV__ENST00000359890.7_2_14:23370637-23370934:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2893981933594	2	480.287277	958.560001	-0.10628	-5.1045E-05	0.91754	0.00044068	0.81126	0.00038964	480.2880051124295	65.834	0.64575	65.864	65.552	66.197	0.030098					56	16	4	0	0	0	0.80469	1	7767	7767		58.782	0	1	6345600	+		48122	30892	33416	33468	53509	53509					0.07906368031081001
LSLVDNCID	9	Unmodified	_LSLVDNCID_					0	0	0			REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.287109375	2	496.241875	990.469197	-0.20931	-0.00010387	1.1549	0.00057313	0.94564	0.00046927	496.24233528416636	66.611	0.98286	66.641	66.413	67.396	0.030106					31	24	2	0	0	0	0.02435	1	7937	7937		42.396	11.892	1	668480	+		48123	32527	33417	33469	53510	53510					-0.026418887993713724
LSLVEFLA	8	Unmodified	_LSLVEFLA_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.7218322753906	2	446.262936	890.51132	-0.327	-0.00014593	-3.7196	-0.0016599	-4.0466	-0.0018059	446.2627787968749	32.886	0.16187	32.721	32.638	32.8	-0.16565					5	3	2	0	0	0	0.027866	1	2295	2295		33.516	9.3128	1	20476	+		48124	21310	33418	33470	53511	53511					0.06168454671319523
LSLVKCQLP	9	Unmodified	_LSLVKCQLP_					0	0	0			REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.74578857421875	2	500.79662	999.578688	-0.24767	-0.00012403	3.6298	0.0018178	3.3821	0.0016938	500.79825516643757	41.244	0.5036	41.108	40.791	41.294	-0.13554					24	12	3	0	0	0	0.024427	1	3626	3626		34.173	20.397	1	318510	+		48125	31651	33419	33471	53512	53512					0.07888161610628686
LSLVKEELG	9	Unmodified	_LSLVKEELG_					0	0	0		ENSG00000023697|ENST00000428559|DERA	ENSG00000023697|ENST00000428559|DERA	ENSG00000023697|ENST00000428559|DERA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3117980957031	2	494.289682	986.564812	-0.2505	-0.00012382	-1.0944	-0.00054094	-1.3449	-0.00066476	494.2891609548495	80.79	0.60194	80.552	80.206	80.808	-0.23784					28	14	3	0	0	0	0.023837	1	9682	9682		54.776	0	1	357920			48126	975	33420	33472	53513	53513					0.07099207383203066
LSLVPPLDC	9	Unmodified	_LSLVPPLDC_					0	0	0			REV__ENSG00000279395|ENST00000625203|OR5L1	REV__ENSG00000279395|ENST00000625203|OR5L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7612609863281	2	478.759704	955.504854	0.0056597	2.7096E-06	1.4829	0.00070995	1.4885	0.00071266	478.76028389743067	33.751	1.128	33.746	33.523	34.651	-0.0045624					93	28	5	0	0	0	0.4752	1	2501	2501		60.972	7.6205	1	19598000	+		48127	29229	33421	33473	53514	53514					0.02532193448291764
LSLVRLGEP	9	Unmodified	_LSLVRLGEP_					0	0	0		ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2986145019531	2	492.297842	982.581131	-0.79608	-0.00039191	0.5485	0.00027002	-0.24758	-0.00012188	492.2979223686453	60.555	1.4181	60.379	60.037	61.455	-0.1761					58	34	3	0	0	0	0.34489	1	6746	6746		69.628	5.4204	1	1528000			48128	9476	33422	33474	53515	53515					0.08914333339953373
LSLVSELSRSI	11	Unmodified	_LSLVSELSRSI_					0	0	0			REV__nc|ENSG00000174292|Q13470|TNK1	REV__nc|ENSG00000174292|Q13470|TNK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.9035339355469	3	401.902961	1202.68705	0.24655	9.9088E-05	0.99177	0.0003986	1.2383	0.00049768	401.90332922764964	30.709	0.74809	30.465	30.163	30.911	-0.24415					49	17	4	0	0	0	0.96481	1	1999	1999		44.639	2.2433	1	1900800	+		48129	26851	33423	33475	53516	53516					0.09381624394768551
LSLVVEGIN	9	Unmodified	_LSLVVEGIN_					0	0	0		ENST00000482490.5_1_3:64554138-64554207:-|nuORF	ENST00000482490.5_1_3:64554138-64554207:-|nuORF	ENST00000482490.5_1_3:64554138-64554207:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.768798828125	2	472.276575	942.538597	0.68893	0.00032536	-0.73244	-0.00034592	-0.043513	-2.055E-05	472.2761151602161	75.423	1.1938	75.434	74.895	76.089	0.010376					51	31	2	0	0	0	0.024288	1	9285	9285		36.447	0	1	979370			48130	15259	33424	33476	53517	53517					0.0650293821172454
LSLYQRLPT	9	Unmodified	_LSLYQRLPT_					0	0	0		ENST00000308278.12_1_17:644901-645264:+|nuORF	ENST00000308278.12_1_17:644901-645264:+|nuORF	ENST00000308278.12_1_17:644901-645264:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.765380859375	2	545.816399	1089.61824	-1.0045	-0.00054828	0.21031	0.00011479	-0.79419	-0.00043348	545.8164238580612	67.158	0.6817	66.877	66.672	67.354	-0.28148					32	16	3	0	0	0	0.024487	1	8043	8043		17.365	0	1	676110			48131	12027	33425	33477	53518	53518					0.07702004885709357
LSMDGLFGTI	10	Unmodified	_LSMDGLFGTI_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant;RIPK4|p.I213Rfs*24|1|0.18|ENSG00000183421|chr21:41749189-41749190|-/TAATC|frameshift_variant;RIPK4|p.V237Gfs*37|1|0.1|ENSG00000183421|chr21:41746737-41746738|-/A|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.267822265625	2	527.267893	1052.52123	-0.75238	-0.0003967	3.6835	0.0019422	2.9311	0.0015455	527.2698001768567	53.151	0.95748	53.004	52.645	53.602	-0.14723					36	25	2	0	0	0	0.52982	1	5709	5709		84.916	2.6105	1	3689500			48132	9226	33426	33478	53519	53519					-0.002927253855887102
LSMDNNRSL	9	Unmodified	_LSMDNNRSL_					0	0	0		CON__Q922U2;ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__Q6IFZ6	CON__Q922U2;ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__Q6IFZ6	CON__Q922U2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2581176757812	2	525.255848	1048.49714	-0.17452	-9.1669E-05	4.2849	0.0022507	4.1104	0.002159	525.2579152756163	63.534	1.0572	63.282	62.893	63.95	-0.25141					95	28	5	0	0	0	0.32064	1	7389	7389		72.879	7.4139	1	5669900		+	48133	569;518;510;559	33427	33479	53520	53520					-0.0251656581926909
LSMDNNRSL	9	Unmodified	_LSMDNNRSL_					0	0	0		CON__Q922U2;ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENSG00000186442|ENST00000417996|KRT3;CON__P12035;CON__Q6IFZ6	CON__Q922U2;ENSG00000167768|ENST00000252244|KRT1;ENSG00000186442|ENST00000417996|KRT3;CON__Q6IFZ6	CON__Q922U2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2578735351562	2	525.255848	1048.49714	1.4353	0.00075388	2.4497	0.0012867	3.885	0.0020406	525.2569811048166	63.267	1.3961	63.322	62.801	64.197	0.054104					99	37	5	0	0	0	0.15366	1	7316	7316		98.629	2.8142	1	5318600		+	48134	569;518;510;559	33427	33479	53521	53521					-0.0251656581926909
LSMEILMLL	9	Unmodified	_LSMEILMLL_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7985229492188	2	531.800514	1061.58648	-0.31385	-0.00016691	-2.8903	-0.0015371	-3.2042	-0.001704	531.7988521002239	99.015	1.2258	99.015	98.562	99.787	0					80	27	4	0	0	0	0.040175	4	12694	12632;12668;12682;12694		133.47	28.2	1	2668100	+		48135	20516	33428	33480	53522;53523;53524;53525	53525					0.058145528159002424
LSMEILMLL	9	Unmodified	_LSMEILMLL_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7986450195312	2	531.800514	1061.58648	-0.72033	-0.00038307	-2.0409	-0.0010854	-2.7613	-0.0014684	531.7989480358904	101.65	1.9571	101.65	100.7	102.65	0					70	44	3	0	0	0	0.20304	1	13023	13023		88.643	8.7036	1	370770	+		48136	20516	33428	33480	53526	53526					0.058145528159002424
LSMEILMLL	9	Unmodified	_LSMEILMLL_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.323974609375	2	531.800514	1061.58648	-0.87918	-0.00046755	2.2838	0.0012145	1.4046	0.00074697	531.8011335237854	72.923	0.57275	72.923	72.573	73.146	0					23	13	2	0	0	0	0.024541	1	8850	8850		24.203	0	1	450380	+		48137	20516	33428	33480	53527	53527					0.058145528159002424
LSMEILMLL	9	Unmodified	_LSMEILMLL_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7986450195312	2	531.800514	1061.58648	-0.1908	-0.00010147	-3.0392	-0.0016163	-3.23	-0.0017177	531.7987709344908	98.974	1.2634	98.984	98.48	99.743	0.010231					82	28	4	0	0	0	0.15889	1	12591	12591		97.473	9.7763	1	3036200	+		48138	20516	33428	33480	53528	53528					0.058145528159002424
LSMEILMLL	9	Unmodified	_LSMEILMLL_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7994995117188	2	531.800514	1061.58648	-0.46321	-0.00024634	-2.5579	-0.0013603	-3.0211	-0.0016066	531.7988227596488	101.68	1.9656	101.69	100.74	102.71	0.0085068					63	45	2	0	0	0	0.22754	1	12970	12970		85.359	13.982	1	356710	+		48139	20516	33428	33480	53529	53529					0.058145528159002424
LSMEILMLL	9	Unmodified	_LSMEILMLL_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7984619140625	2	531.800514	1061.58648	0.2082	0.00011072	-3.5535	-0.0018898	-3.3453	-0.001779	531.7985031464159	99.062	1.2624	99.058	98.596	99.858	-0.0038834					82	28	4	0	0	0	0.062871	2	12579	12579;12603		123.99	12.34	1	3158900	+		48140	20516	33428	33480	53530;53531	53530					0.058145528159002424
LSMEWRPG	8	Unmodified	_LSMEWRPG_					0	0	0			REV__ENST00000473880.5_1_7:102108873-102109143:+|nuORF	REV__ENST00000473880.5_1_7:102108873-102109143:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2711181640625	2	488.23947	974.464386	1.8527	0.00090456	0.55726	0.00027208	2.41	0.0011766	488.2397341660233	23.262	0.31239	23.071	22.897	23.209	-0.19117					11	6	2	0	0	0	0.027866	1	857	857		73.975	5.1879	1	64019	+		48141	33257	33429	33481	53532	53532					-0.02386728151452644
LSMGPLVEVS	10	Unmodified	_LSMGPLVEVS_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.272705078125	2	516.275718	1030.53688	0.14938	7.7119E-05	-2.9126	-0.0015037	-2.7632	-0.0014266	516.2739268311767	79.859	0.7916	79.708	79.321	80.112	-0.15051					52	18	4	0	0	0	0.62431	1	9574	9574		74.255	2.9593	1	1033300	+		48142	25017	33430	33482	53533	53533					0.022835611314576454
LSMIYKLV	8	Unmodified	_LSMIYKLV_					0	0	0		nc|ENSG00000054796|Q9Y5K1-2|SPO11;ENSG00000054796|ENST00000371263|SPO11	nc|ENSG00000054796|Q9Y5K1-2|SPO11	nc|ENSG00000054796|Q9Y5K1-2|SPO11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7904968261719	2	483.788264	965.561975	-0.049389	-2.3894E-05	3.2767	0.0015852	3.2273	0.0015613	483.7898328084128	45.911	1.6573	45.911	45.31	46.967	0					115	46	4	0	0	0	0.845	1	4474	4474		55.504	2.1528	1	22718000			48143	1178	33431	33483	53534	53534					0.07781660724674566
LSMKDIVEV	9	Unmodified	_LSMKDIVEV_					0	0	0		chr2:233691820-233693004|326|15.29|0.83|4.2|+|ENST00000441351|UGT1A6,UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6;ENSG00000167165|ENST00000305139|UGT1A6	chr2:233691820-233693004|326|15.29|0.83|4.2|+|ENST00000441351|UGT1A6,UGT1A6	chr2:233691820-233693004|326|15.29|0.83|4.2|+|ENST00000441351|UGT1A6,UGT1A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7686767578125	2	517.283543	1032.55253	-0.69988	-0.00036204	3.9449	0.0020407	3.2451	0.0016786	517.2858155878032	39.413	0.68224	39.249	38.971	39.653	-0.16459					18	11	2	0	0	0	0.024487	1	3343	3343		40.573	20.091	1	150120			48144	382	33432	33484	53535	53535					0.03755847648494637
LSMKHSTKT	9	Unmodified	_LSMKHSTKT_					0	0	0		TTN|p.D30041H|1|0.22|ENSG00000155657|chr2:178546287-178546287|C/G|missense_variant	TTN|p.D30041H|1|0.22|ENSG00000155657|chr2:178546287-178546287|C/G|missense_variant	TTN|p.D30041H|1|0.22|ENSG00000155657|chr2:178546287-178546287|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8135986328125	2	516.778959	1031.54336	-0.60528	-0.0003128	-1.1172	-0.00057734	-1.7225	-0.00089014	516.7773364226628	60.478	0.7554	60.264	60	60.756	-0.21339					52	19	4	0	0	0	0.024389	1	6937	6937		35.152	6.0025	1	582300			48145	38116	33433	33485	53536	53536					0.02885499082822207
LSMKHSTKT	9	Unmodified	_LSMKHSTKT_					0	0	0		TTN|p.D30041H|1|0.22|ENSG00000155657|chr2:178546287-178546287|C/G|missense_variant	TTN|p.D30041H|1|0.22|ENSG00000155657|chr2:178546287-178546287|C/G|missense_variant	TTN|p.D30041H|1|0.22|ENSG00000155657|chr2:178546287-178546287|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8139038085938	2	516.778959	1031.54336	-2.1531	-0.0011127	-0.44782	-0.00023142	-2.601	-0.0013441	516.7781967100859	60.176	0.74808	60.255	59.974	60.722	0.078888					36	19	3	0	0	0	0.024418	1	6838	6838		30.318	16.181	1	485560			48146	38116	33433	33485	53537	53537					0.02885499082822207
LSMKKKSAR	9	Unmodified	_LSMKKKSAR_					0	0	0		nc|ENSG00000124812|P54107-2|CRISP1;ENSG00000124812|ENST00000335847|CRISP1	nc|ENSG00000124812|P54107-2|CRISP1	nc|ENSG00000124812|P54107-2|CRISP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2719116210938	2	524.818418	1047.62228	-0.92349	-0.00048466	-2.6291	-0.0013798	-3.5526	-0.0018644	524.8167270893073	39.067	0.75394	39.091	38.844	39.598	0.023727					37	20	3	0	0	0	0.024209	1	3325	3325		56.721	0	1	1571400			48147	4080	33434	33486	53538	53538					0.10037771107772642
LSMKKKSAR	9	Unmodified	_LSMKKKSAR_					0	0	0		nc|ENSG00000124812|P54107-2|CRISP1;ENSG00000124812|ENST00000335847|CRISP1	nc|ENSG00000124812|P54107-2|CRISP1	nc|ENSG00000124812|P54107-2|CRISP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.818418	1047.62228	-1.1644	-0.00061108	-2.8696	-0.001506	-4.034	-0.0021171	524.8167352876942	38.888	0.4799	38.888	38.597	39.076	0	-0.016319	-5.0212E-05	NaN	56.721	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1743300			48148	4080	33434	33486							0.10037771107772642
LSMKRQLA	8	Unmodified	_LSMKRQLA_					0	0	0		ENST00000586314.5_1_18:31432808-31708839:-|nuORF;nc|ENSG00000101746|O94818-2|NOL4;nc|ENSG00000101746|O94818-3|NOL4;ENSG00000101746|ENST00000261592|NOL4;nc|ENSG00000101746|O94818-4|NOL4	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7784423828125	2	473.778762	945.542971	0.27668	0.00013108	-2.0152	-0.00095474	-1.7385	-0.00082366	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.94517	1	1002	1002		45.952	1.8352	1	5959600			48149	2345	33435	33487	53539	53539					0.06802124153625755
LSMKRQLA	8	Unmodified	_LSMKRQLA_					0	0	0		ENST00000586314.5_1_18:31432808-31708839:-|nuORF;nc|ENSG00000101746|O94818-2|NOL4;nc|ENSG00000101746|O94818-3|NOL4;ENSG00000101746|ENST00000261592|NOL4;nc|ENSG00000101746|O94818-4|NOL4	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	473.7788391113281	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.504	1	24.583	24.083	25.083	0.078344								0	0	0	0.40904	1	1024	1024		65.803	15.779	1				48150	2345	33435	33487	53540	53540					0.06802124153625755
LSMKRQLA	8	Unmodified	_LSMKRQLA_					0	0	0		ENST00000586314.5_1_18:31432808-31708839:-|nuORF;nc|ENSG00000101746|O94818-2|NOL4;nc|ENSG00000101746|O94818-3|NOL4;ENSG00000101746|ENST00000261592|NOL4;nc|ENSG00000101746|O94818-4|NOL4	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	ENST00000586314.5_1_18:31432808-31708839:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	473.7790832519531	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.595	1	24.674	24.174	25.174	0.078344								0	0	0	0.49603	1	1036	1036		55.504	4.1688	1				48151	2345	33435	33487	53541	53541					0.06802124153625755
LSMKTLLEL	9	Unmodified	_LSMKTLLEL_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3084106445312	2	524.309561	1046.60457	-0.1144	-5.9979E-05	-4.4114	-0.0023129	-4.5257	-0.0023729	524.3074545808304	75.146	0.70462	74.883	74.531	75.235	-0.26326					40	16	3	0	0	0	0.19099	1	8880	8880		90.37	13.052	1	1876100			48152	5911	33436	33488	53542	53542					0.08313011062250553
LSMLFKHLY	9	Unmodified	_LSMLFKHLY_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.7845458984375	2	576.31772	1150.62089	-0.15295	-8.815E-05	3.4054	0.0019626	3.2525	0.0018744	576.3197131981601	61.303	0.67853	61.097	60.581	61.259	-0.20599					29	16	2	0	0	0	0.024523	1	6793	6793		5.9211	0	1	113070	+		48153	23025	33437	33489	53543	53543					0.05160137019015565
LSMNEMTL	8	Unmodified	_LSMNEMTL_					0	0	0		nc|ENSG00000137251|Q9UJW2-2|TINAG	nc|ENSG00000137251|Q9UJW2-2|TINAG	nc|ENSG00000137251|Q9UJW2-2|TINAG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.76922607421875	2	469.719721	937.424889	-0.21023	-9.8748E-05	-1.9048	-0.00089471	-2.115	-0.00099346	469.7200620008528	48.577	0.20824	48.424	48.261	48.469	-0.15277					7	5	2	0	0	0	0.027866	1	4918	4918		106.42	37.628	1	29383			48154	18311	33438	33490	53544	53544					-0.046326162171908436
LSMPAKSIN	9	Unmodified	_LSMPAKSIN_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7914733886719	2	480.762778	959.511002	0.11169	5.3696E-05	-0.33002	-0.00015866	-0.21833	-0.00010496	480.762654491851	30.587	0.37643	30.437	30.18	30.556	-0.14952					11	8	2	0	0	0	0.023837	1	1938	1938		84.916	8.0689	1	52075	+		48155	36819	33439	33491	53545	53545					0.029627116798110364
LSMSERSR	8	Unmodified	_LSMSERSR_					0	0	0			REV__ENST00000429315.3_1_3:47284501-47284678:+|nuORF	REV__ENST00000429315.3_1_3:47284501-47284678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7703552246094	2	483.245283	964.476014	0.019574	9.4591E-06	4.3949	0.0021238	4.4145	0.0021333	483.2473091609944	43.029	2.28	43.06	42.157	44.437	0.030827					102	63	4	0	0	0	0.027866	1	3980	3980		42.396	3.59	1	956150	+		48156	32333	33440	33492	53546	53546					-0.007645311281180511
LSNAKKIYR	9	Unmodified	_LSNAKKIYR_					0	0	0			REV__ENST00000491195.1_1_3:150264653-150284742:-|nuORF	REV__ENST00000491195.1_1_3:150264653-150284742:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7892456054688	2	546.82984	1091.64513	-0.72359	-0.00039568	0.31684	0.00017326	-0.40675	-0.00022242	546.8299496189583	30.712	0.66831	30.534	30.243	30.912	-0.17818					32	15	3	0	0	0	0.024261	1	2022	2022		64.207	14.766	1	341980	+		48157	33391	33441	33493	53547	53547					0.10297113496881138
LSNCYGEKLCQ	11	Unmodified	_LSNCYGEKLCQ_					0	0	0			REV__ENST00000483527.5_1_2:99217217-99224734:-|nuORF	REV__ENST00000483527.5_1_2:99217217-99224734:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.52203369140625	3	419.858258	1256.55294	-0.1037	-4.354E-05	2.8794	0.0012089	2.7757	0.0011654	420.19415424124037	24.88	0.22301	24.705	24.598	24.821	-0.17484					5	4	2	0	0	0	0.024767	1	1115	1115		14.779	3.1429	1	18242	+		48158	27579	33442	33494	53548	53548					-0.06507100693943357
LSNDSQREF	9	Unmodified	_LSNDSQREF_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.2579956054688	2	548.256902	1094.49925	-1.367	-0.00074945	1.0923	0.00059888	-0.27465	-0.00015058	548.257370369866	33.547	0.63497	33.382	33.156	33.791	-0.16565					34	15	3	0	0	0	0.16254	1	2388	2388		96.665	8.9107	1	1849500			48159	1644	33443	33495	53549	53549					-0.04421813809813102
LSNDSQREF	9	Unmodified	_LSNDSQREF_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.256902	1094.49925	-0.30193	-0.00016553	0.15765	8.643E-05	-0.14428	-7.9104E-05	548.2568004469216	33.701	0.60455	33.47	33.232	33.837	-0.23107	0.050698	-0.00051596	NaN	96.665	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1705400			48160	1644	33443	33495							-0.04421813809813102
LSNDSQREF	9	Unmodified	_LSNDSQREF_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.256902	1094.49925	-0.49238	-0.00026995	-0.049428	-2.7099E-05	-0.54181	-0.00029705	548.2567391851807	33.606	0.5477	33.406	33.209	33.756	-0.20019	-0.013066	-0.00074302	NaN	96.665	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1639800			48161	1644	33443	33495							-0.04421813809813102
LSNGVGLLW	9	Unmodified	_LSNGVGLLW_					0	0	0			REV__GPR119|p.L274V|1|0.33|ENSG00000147262|chrX:130384628-130384628|G/C|missense_variant	REV__GPR119|p.L274V|1|0.33|ENSG00000147262|chrX:130384628-130384628|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7718200683594	2	479.77146	957.528367	0.010647	5.1081E-06	0.35446	0.00017006	0.3651	0.00017517	479.7714111398097	88.589	0.99354	88.418	87.931	88.924	-0.17053					67	23	4	0	0	0	0.22754	1	10775	10775		85.359	11.385	1	2066700	+		48162	24545	33444	33496	53550	53550					0.047903752771503605
LSNHFVVL	8	Unmodified	_LSNHFVVL_					0	0	0			REV__ENSG00000111335|ENST00000392583|OAS2	REV__ENSG00000111335|ENST00000392583|OAS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	464.766178	927.517802	-0.47466	-0.00022061	-3.7423	-0.0017393	-4.2169	-0.0019599	464.7643573617215	34.27	0.50747	34.27	33.972	34.479	0					22	12	2	0	0	0	0.027866	1	2502	2502		38.806	9.6566	1	1527900	+		48163	21910	33445	33497	53551	53551					0.051143926227155134
LSNHFVVL	8	Unmodified	_LSNHFVVL_					0	0	0			REV__ENSG00000111335|ENST00000392583|OAS2	REV__ENSG00000111335|ENST00000392583|OAS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.766178	927.517802	-0.017317	-8.0482E-06	-4.2445	-0.0019727	-4.2618	-0.0019808	464.76413119643246	34.101	0.55715	34.151	33.884	34.441	0.050255	-0.033665	-3.9941E-06	NaN	23.042	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1361200	+		48164	21910	33445	33497							0.051143926227155134
LSNHPDRARP	10	Unmodified	_LSNHPDRARP_					0	0	0		ENST00000291691.11_1_21:47743574-47743685:-|nuORF	ENST00000291691.11_1_21:47743574-47743685:-|nuORF	ENST00000291691.11_1_21:47743574-47743685:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.8093872070312	2	581.807428	1161.6003	4.953	0.0028817	-1.8881	-0.0010985	3.0649	0.0017832	581.8061962073949	17.867	0.89192	17.928	17.754	18.646	0.06036					33	19	3	0	0	0	1.089	1	180	180		34.173	3.6689	1	182640			48165	11800	33446	33498	53552	53552					0.025966826835428947
LSNKQDMF	8	Unmodified	_LSNKQDMF_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7696533203125	2	491.73676	981.458967	-0.20097	-9.8825E-05	-2.7062	-0.0013307	-2.9072	-0.0014296	491.7354787976369	42.373	0.3837	42.399	42.221	42.605	0.026012					14	10	2	0	0	0	0.027866	1	3821	3821		53.351	0	1	84964	+		48166	27399	33447	33499	53553	53553					-0.03250451733936188
LSNKTLAL	8	Unmodified	_LSNKTLAL_					0	0	0			REV__nc|ENSG00000144560|Q14135-5|VGLL4	REV__nc|ENSG00000144560|Q14135-5|VGLL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.2663269042969	2	430.26601	858.517468	-0.36833	-0.00015848	0.85209	0.00036662	0.48376	0.00020815	430.26624142816445	20.911	0.79084	20.698	20.425	21.216	-0.2128					36	15	4	0	0	0	0.6248	1	579	579		73.975	5.49	1	449430	+		48167	24342	33448	33500	53554	53554					0.08254972902830104
LSNLPIACPY	10	Unmodified	_LSNLPIACPY_					0	0	0			REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.816650390625	2	545.78371	1089.55287	-0.62734	-0.00034239	-0.77764	-0.00042442	-1.405	-0.00076682	546.2856274551677	67.647	0.25991	67.409	67.289	67.549	-0.23814					8	5	2	0	0	0	0.03519	1	7770	7770		66.429	14.13	1	64035	+		48168	35792	33449	33501	53555	53555					0.011672673683506218
LSNRQRSL	8	Unmodified	_LSNRQRSL_					0	0	0			REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.27960205078125	2	487.280515	972.546476	-0.83848	-0.00040858	1.5236	0.00074241	0.6851	0.00033384	487.2805862361862	23.301	1.116	23.377	22.84	23.956	0.076241					54	25	4	0	0	0	0.89627	1	860	860		51.335	6.9583	1	998880	+		48169	19269	33450	33502	53556	53556					0.05910510251840151
LSNVANVTL	9	Unmodified	_LSNVANVTL_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	465.766374	929.518196	-0.4996	-0.0002327	0.62002	0.00028878	0.12042	5.6087E-05	465.7664493995074	34.02	0.70208	34.02	33.777	34.479	0					40	17	3	0	0	0	0.024319	1	2502	2502		56.721	0	1	1295200	+		48170	22204	33451	33503	53557	53557					0.05061767551910634
LSNVDWPI	8	Unmodified	_LSNVDWPI_					0	0	0			REV__ENST00000481851.1_1_1:201465194-201465431:-|nuORF	REV__ENST00000481851.1_1_1:201465194-201465431:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7539367675781	2	472.247818	942.481082	-0.27465	-0.00012971	-4.129	-0.0019499	-4.4037	-0.0020796	472.2458253168005	39.143	0.60442	39.044	38.807	39.411	-0.098751					35	16	3	0	0	0	0.027866	1	3383	3383		26.693	10.22	1	1104200	+		48171	33465	33452	33504	53558	53558					0.007540960061305668
LSNVHKKRVSA	11	Unmodified	_LSNVHKKRVSA_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8698120117188	2	619.870028	1237.7255	-1.0156	-0.00062956	0.033515	2.0775E-05	-0.98212	-0.00060879	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	0.9728	1	12029	12029		42.864	2.0861	1	4459000			48172	1904	33453	33505	53559	53559					0.11614974819940471
LSNVHKKRVSA	11	Unmodified	_LSNVHKKRVSA_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8695068359375	2	619.870028	1237.7255	-0.98359	-0.0006097	-0.34317	-0.00021272	-1.3268	-0.00082242	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	1.0075	1	11401	11401		35.152	2.4015	1	1625000			48173	1904	33453	33505	53560	53560					0.11614974819940471
LSNVHKKRVSA	11	Unmodified	_LSNVHKKRVSA_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8692626953125	2	619.870028	1237.7255	-0.13269	-8.2249E-05	-0.82013	-0.00050837	-0.95281	-0.00059062	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0499	1	11553	11553		25.126	1.6033	1	4730400			48174	1904	33453	33505	53561	53561					0.11614974819940471
LSNVRLIVQ	9	Unmodified	_LSNVRLIVQ_					0	0	0			REV__nc|ENSG00000109944|Q6NUN7-2|JHY	REV__nc|ENSG00000109944|Q6NUN7-2|JHY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.314208984375	2	521.324391	1040.63423	-0.61723	-0.00032178	0.26494	0.00013812	-0.35229	-0.00018365	521.3243693171262	45.726	0.62943	45.524	45.226	45.855	-0.20226					37	17	3	0	0	0	0.024405	1	4403	4403		44.117	8.4985	1	1950200	+		48175	36561	33454	33506	53562	53562					0.11553711122587629
LSNVSVYPR	9	Unmodified	_LSNVSVYPR_					0	0	0			REV__ENSG00000128203|ENST00000215906|ASPHD2	REV__ENSG00000128203|ENST00000215906|ASPHD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7049560546875	2	517.785099	1033.55564	-0.1172	-6.0686E-05	2.6627	0.0013787	2.5455	0.001318	517.7868812448605	34.062	0.21821	33.855	33.75	33.968	-0.20696					8	5	2	0	0	0	0.024292	1	2466	2466		40.778	0	1	67037	+		48176	22968	33455	33507	53563	53563					0.040208588175119075
LSPAARAPVHS	11	Unmodified	_LSPAARAPVHS_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000566635.5_1_15:28356911-28362639:-|nuORF;ENST00000568206.1_1_15:28360544-28362081:-|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000568206.1_1_15:28360544-28362081:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8306884765625	2	553.309272	1104.60399	-0.72881	-0.00040326	3.7019	0.0020483	2.9731	0.0016451	553.3108865924086	89.321	1.0058	89.158	88.891	89.897	-0.1626					63	23	5	0	0	0	0.024783	1	10910	10910		59.931	29.427	1	690190			48177	4311;16974	33456	33508	53564	53564					0.055873524574280964
LSPAGRPKPL	10	Unmodified	_LSPAGRPKPL_					0	0	0			REV__LZTS2|p.S206Lfs*96|1|0.23|ENSG00000107816|chr10:101003714-101003718|AGTGG/-|frameshift_variant	REV__LZTS2|p.S206Lfs*96|1|0.23|ENSG00000107816|chr10:101003714-101003718|AGTGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.8230590820312	2	518.319109	1034.62366	0.12846	6.6581E-05	-4.361	-0.0022604	-4.2325	-0.0021938	518.3166780596991	85.477	2.7944	85.282	84.176	86.97	-0.19508					140	65	3	0	0	0	0.03519	1	10510	10510		29.17	7.4677	1	341650	+		48178	21689	33457	33509	53565	53565					0.10773728468188892
LSPAQTNPV	9	Unmodified	_LSPAQTNPV_					0	0	0		nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;ENSG00000164877|ENST00000297508|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2332763671875	2	463.750724	925.486896	-0.03174	-1.472E-05	-0.69328	-0.00032151	-0.72502	-0.00033623	463.7503034889474	53.646	0.53444	53.646	53.337	53.872	0					18	14	2	0	0	0	0.0245	1	5849	5849		36.447	19.742	1	148450			48179	7331	33458	33510	53566	53566					0.021171945178025453
LSPAQTNPV	9	Unmodified	_LSPAQTNPV_					0	0	0		nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;ENSG00000164877|ENST00000297508|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7513122558594	2	463.750724	925.486896	0.040941	1.8986E-05	0.04527	2.0994E-05	0.086211	3.998E-05	463.75072003768804	49.747	1.309	49.821	49.428	50.737	0.074196					98	37	6	0	0	0	0.37611	1	5112	5112		67.494	0	1	11665000			48180	7331	33458	33510	53567	53567					0.021171945178025453
LSPDADAYSP	10	Unmodified	_LSPDADAYSP_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.25634765625	2	518.235104	1034.45566	0.18206	9.4349E-05	-0.049259	-2.5528E-05	0.1328	6.8821E-05	518.2349221332831	81.729	0.5499	81.5	81.312	81.862	-0.2289					23	12	3	0	0	0	0.03519	1	9845	9845		26.693	0	1	174580			48181	198	33459	33511	53568	53568					-0.06019423306952376
LSPDIAKIVA	10	Unmodified	_LSPDIAKIVA_					0	0	0			REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.84228515625	2	513.813325	1025.6121	1.7578	0.00090319	0.074707	3.8385E-05	1.8325	0.00094158	513.8153808234172	23.522	0.23302	23.331	23.167	23.4	-0.19117					7	5	2	0	0	0	0.03519	1	911	911		44.377	6.5657	1	20367	+		48182	19499	33460	33512	53569	53569					0.10031486654179389
LSPDMGHSLCR	11	Carbamidomethyl (C)	_LSPDMGHSLC(Carbamidomethyl (C))R_	LSPDMGHSLC(1)R		LSPDMGHSLC(73)R		0	1	0			REV__ENST00000390319.2_1_22:23222891-23223292:+|nuORF	REV__ENST00000390319.2_1_22:23222891-23223292:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	636.7960815429688	2	636.794814	1271.57508	-0.031938	-2.0338E-05	1.8712	0.0011916	1.8393	0.0011712	636.7958855831241	83.804	0.85345	83.666	83.34	84.194	-0.13861					44	19	3	0	0	0	0.55321	1	10102	10102		72.879	16.158	1	831550	+		48183	31576	33461	33513	53570	53570	416				-0.049848762255351176
LSPDMGHSLCR	11	Carbamidomethyl (C)	_LSPDMGHSLC(Carbamidomethyl (C))R_					0	1	0			REV__ENST00000390319.2_1_22:23222891-23223292:+|nuORF	REV__ENST00000390319.2_1_22:23222891-23223292:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	636.794814	1271.57508	-0.031938	-2.0338E-05	1.8712	0.0011916	1.8393	0.0011712	636.7958855831241	83.804	0.85345	83.666	83.34	84.194	-0.13861	0.01772	-0.00029364	NaN	72.879	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	831550	+		48184	31576	33461	33513			416				-0.049848762255351176
LSPDTIMECAM	11	Oxidation (M)	_LSPDTIM(Oxidation (M))ECAM_		LSPDTIM(0.827)ECAM(0.173)		LSPDTIM(6.8)ECAM(-6.8)	0	0	1		ENSG00000216490|ENST00000407280|IFI30;ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.5099792480469	3	409.508237	1225.50288	0.0079947	3.2739E-06	3.479	0.0014247	3.487	0.0014279	409.50972029689416	28.373	0.88945	28.369	28.117	29.006	-0.0042019					33	20	2	0	0	0	0.70536	1	1633	1633		63.426	23.368	2	4305800			48185	10597	33462	33514	53571	53571		444;445			-0.1008497141413045
LSPDTIMECAM	11	Oxidation (M)	_LSPDTIMECAM(Oxidation (M))_		LSPDTIM(0.167)ECAM(0.833)		LSPDTIM(-7)ECAM(7)	0	0	1		ENSG00000216490|ENST00000407280|IFI30;ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.50970458984375	3	409.508237	1225.50288	0.59109	0.00024205	2.3066	0.00094455	2.8976	0.0011866	409.50936859173737	28.021	0.80962	28.101	27.683	28.493	0.080811					55	19	4	0	0	0	0.59134	1	1546	1546		70.399	15.676	2	4141000			48186	10597	33462	33514	53572	53572		444;445			-0.1008497141413045
LSPDYRGGS	9	Unmodified	_LSPDYRGGS_					0	0	0			REV__ENST00000468414.1_1_3:127336783-127340613:+|nuORF	REV__ENST00000468414.1_1_3:127336783-127340613:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2611999511719	2	476.230156	950.445759	-0.73737	-0.00035116	3.8383	0.0018279	3.1009	0.0014767	476.23126578770143	29.854	0.46227	29.681	29.325	29.787	-0.17258					15	10	2	0	0	0	0.024539	1	1819	1819		27.882	6.1799	1	48927	+		48187	33103	33463	33515	53573	53573					-0.03144566521655179
LSPEDDDL	8	Unmodified	_LSPEDDDL_					0	0	0			REV__ENSG00000110713|ENST00000324932|NUP98	REV__ENSG00000110713|ENST00000324932|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.24847412109375	2	452.20073	902.386907	-0.51485	-0.00023281	-1.6064	-0.0007264	-2.1212	-0.00095921	452.19916606370384	33.232	0.56767	33.239	32.967	33.534	0.0066261					24	15	3	0	0	0	0.027866	1	2339	2339		73.975	23.95	1	192980	+		48188	21869	33464	33516	53574	53574					-0.06819087606652374
LSPEILLEP	9	Unmodified	_LSPEILLEP_					0	0	0		ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.74530029296875	2	505.792058	1009.56956	-0.5862	-0.0002965	2.2398	0.0011329	1.6536	0.00083637	505.79250074226104	81.467	0.85187	81.491	81.086	81.938	0.023911					31	20	2	0	0	0	0.024021	1	10135	10135		49.442	20.292	1	105180			48189	11627	33465	33517	53575	53575					0.06516091525952561
LSPEILLEP	9	Unmodified	_LSPEILLEP_					0	0	0		ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.792058	1009.56956	-0.59837	-0.00030265	2.7647	0.0013984	2.1663	0.0010957	505.7930908086539	81.444	0.77198	81.444	81.097	81.869	0	0.037397	-1.0662E-05	NaN	49.442	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160740			48190	11627	33465	33517							0.06516091525952561
LSPEILLEP	9	Unmodified	_LSPEILLEP_					0	0	0		ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.792058	1009.56956	-0.57405	-0.00029035	3.0135	0.0015242	2.4394	0.0012338	506.2955614541205	81.577	0.64368	81.446	81.217	81.86	-0.13075	0.039321	0.000241	NaN	49.442	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132400			48191	11627	33465	33517							0.06516091525952561
LSPEILLEP	9	Unmodified	_LSPEILLEP_					0	0	0		ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	ENST00000268251.12_1_16:8875406-8875859:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.792058	1009.56956	0.28886	0.0001461	3.0637	0.0015496	3.3526	0.0016957	505.7930063206125	81.475	1.2207	81.247	80.857	82.078	-0.22891	-0.16046	0.0002918	NaN	49.442	35	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114290			48192	11627	33465	33517							0.06516091525952561
LSPELRQT	8	Unmodified	_LSPELRQT_					0	0	0			REV__ENST00000374280.3_1_1:26349336-26349810:+|nuORF	REV__ENST00000374280.3_1_1:26349336-26349810:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2757263183594	2	472.263999	942.513445	-0.48805	-0.00023049	-1.7173	-0.00081102	-2.2053	-0.0010415	472.26325975482456	49.578	0.69486	49.652	49.352	50.047	0.074196					32	18	2	0	0	0	0.027866	1	5030	5030		21.96	0	1	500650	+		48193	31292	33466	33518	53576	53576					0.03988883409135724
LSPENDND	8	Unmodified	_LSPENDND_					0	0	0		ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000271425|ENST00000583866|NBPF10;nc|ENSG00000263956|Q86T75-2|NBPF11;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000162825|ENST00000698833|NBPF20	ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19	ENSG00000271383|ENST00000651566|NBPF19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.24847412109375	2	452.188154	902.361755	-0.52478	-0.0002373	-0.45719	-0.00020674	-0.98197	-0.00044403	452.18824423896024	33.266	0.38025	33.272	33.043	33.423	0.0066261					21	10	3	0	0	0	0.027866	1	2339	2339		58.782	4.0173	1	325480			48194	11007;11000	33467	33519	53577	53577					-0.09333142409229822
LSPFALQQT	9	Unmodified	_LSPFALQQT_					0	0	0			REV__ENSG00000095951|ENST00000379388|HIVEP1	REV__ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7947082519531	2	502.7742	1003.53385	-0.067085	-3.3729E-05	1.4458	0.0007269	1.3787	0.00069317	502.7747435324837	49.902	0.79129	49.902	49.324	50.116	0					40	21	2	0	0	0	0.024427	1	5207	5207		26.693	0	1	1136700	+		48195	20979	33468	33520	53578	53578					0.032220540689422705
LSPFPFLDI	9	Unmodified	_LSPFPFLDI_					0	0	0			REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2796020507812	2	524.789318	1047.56408	-0.90984	-0.00047748	1.8966	0.00099534	0.98679	0.00051786	524.788707929297	79.056	0.33537	79.056	78.825	79.16	0					11	7	2	0	0	0	0.02435	1	9774	9774		42.396	15.6	1	110670	+		48196	33024	33469	33521	53579	53579					0.04220412734139245
LSPFPFLDI	9	Unmodified	_LSPFPFLDI_					0	0	0			REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.789318	1047.56408	0.10147	5.325E-05	6.9888	0.0036677	7.0903	0.0037209	524.7926538005729	78.979	1.0113	78.724	78.427	79.438	-0.25471	-0.06831	0.00052413	NaN	58.782	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535190	+		48197	33024	33469	33521							0.04220412734139245
LSPFPFLDI	9	Unmodified	_LSPFPFLDI_					0	0	0			REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.789318	1047.56408	0.21848	0.00011466	6.6638	0.0034971	6.8823	0.0036118	524.792506172646	78.939	0.84241	78.708	78.389	79.232	-0.23141	-0.08471	0.00018299	NaN	58.782	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441510	+		48198	33024	33469	33521							0.04220412734139245
LSPFPFLDI	9	Unmodified	_LSPFPFLDI_					0	0	0			REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.789318	1047.56408	0.18818	9.8753E-05	6.5898	0.0034583	6.778	0.003557	524.7925098688384	78.838	1.0606	78.682	78.297	79.357	-0.15591	-0.11043	0.00010531	NaN	58.782	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480070	+		48199	33024	33469	33521							0.04220412734139245
LSPFRSLKP	9	Unmodified	_LSPFRSLKP_					0	0	0		ENST00000357325.9_1_1:156712400-156712496:-|nuORF	ENST00000357325.9_1_1:156712400-156712496:-|nuORF	ENST00000357325.9_1_1:156712400-156712496:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.292724609375	2	522.813659	1043.61277	0.42379	0.00022156	-2.4751	-0.001294	-2.0513	-0.0010724	522.8128804029969	51.494	0.63609	51.383	51.129	51.765	-0.11163					22	16	2	0	0	0	0.024261	1	5315	5315		64.207	14.766	1	205370			48200	12690	33470	33522	53580	53580					0.09270326093906078
LSPGPRVEV	9	Unmodified	_LSPGPRVEV_					0	0	0		ENST00000302262.7_1_17:78075505-78078358:+|nuORF	ENST00000302262.7_1_17:78075505-78078358:+|nuORF	ENST00000302262.7_1_17:78075505-78078358:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.2548828125	2	477.274367	952.53418	0.95317	0.00045492	-1.3072	-0.00062387	-0.354	-0.00016895	477.2731807256686	41.622	0.66349	41.622	41.225	41.888	0					28	18	2	0	0	0	0.024374	1	3754	3754		58.782	12.83	1	381330			48201	11951	33471	33523	53581	53581					0.05601473788806288
LSPGPRVEV	9	Unmodified	_LSPGPRVEV_					0	0	0		ENST00000302262.7_1_17:78075505-78078358:+|nuORF	ENST00000302262.7_1_17:78075505-78078358:+|nuORF	ENST00000302262.7_1_17:78075505-78078358:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.274367	952.53418	-0.46434	-0.00022162	0.82735	0.00039487	0.36301	0.00017326	477.27454367883485	42.163	0.76355	41.931	41.658	42.422	-0.23186	0.14569	0.00064708	NaN	40.778	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654210			48202	11951	33471	33523							0.05601473788806288
LSPGPRVEV	9	Unmodified	_LSPGPRVEV_					0	0	0		ENST00000302262.7_1_17:78075505-78078358:+|nuORF	ENST00000302262.7_1_17:78075505-78078358:+|nuORF	ENST00000302262.7_1_17:78075505-78078358:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.274367	952.53418	-0.11359	-5.4215E-05	0.3317	0.00015831	0.21811	0.0001041	477.2744117003833	42.145	0.79129	41.915	41.688	42.48	-0.23029	0.12978	0.00017395	NaN	40.778	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939950			48203	11951	33471	33523							0.05601473788806288
LSPGQKNKA	9	Unmodified	_LSPGQKNKA_					0	0	0		nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR	nc|ENSG00000112964|P10912-4|GHR	nc|ENSG00000112964|P10912-4|GHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3128967285156	2	471.771991	941.529429	-0.58263	-0.00027487	-0.030667	-1.4468E-05	-0.6133	-0.00028934	471.7718751783075	45.051	0.43828	44.952	44.749	45.188	-0.099449					20	11	2	0	0	0	0.024205	1	4228	4228		63.306	15.391	1	302010			48204	3252	33472	33524	53582	53582					0.05632589646040742
LSPHLLFLHLG	11	Unmodified	_LSPHLLFLHLG_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.3729248046875	2	623.868966	1245.72338	-1.1991	-0.0007481	4.1643	0.002598	2.9651	0.0018499	623.8714706521811	103.44	0.28905	103.31	103.17	103.46	-0.12783					10	6	2	0	0	0	1.0651	1	12874	12874		20.947	0.95016	1	76345	+		48205	35630	33473	33525	53583	53583					0.11034546082123597
LSPHLLFLHLG	11	Unmodified	_LSPHLLFLHLG_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	623.868966	1245.72338	0.27916	0.00017416	2.6685	0.0016648	2.9477	0.001839	623.8700194503142	103.28	0.343	103.29	103.05	103.4	0.0054245	-0.013545	-0.00047887	NaN	20.947	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50088	+		48206	35630	33473	33525							0.11034546082123597
LSPHLLFLHLG	11	Unmodified	_LSPHLLFLHLG_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	623.868966	1245.72338	-0.33615	-0.00020971	3.1694	0.0019773	2.8333	0.0017676	623.8708933341946	103.35	0.34787	103.35	103.23	103.58	-0.0046005	0.045261	0.00014611	NaN	20.947	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56672	+		48207	35630	33473	33525							0.11034546082123597
LSPHLLFLHLG	11	Unmodified	_LSPHLLFLHLG_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	623.868966	1245.72338	0.52188	0.00032558	2.134	0.0013313	2.6558	0.0016569	623.8702515654675	103.35	0.33948	103.23	103.07	103.4	-0.12724	-0.075827	-0.0011459	NaN	20.947	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49821	+		48208	35630	33473	33525							0.11034546082123597
LSPHLLFLHLG	11	Unmodified	_LSPHLLFLHLG_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	623.868966	1245.72338	-1.1991	-0.0007481	4.1643	0.002598	2.9651	0.0018499	623.8714706521811	103.44	0.28905	103.31	103.17	103.46	-0.12783	0.0068878	0.0013874	NaN	20.947	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76345	+		48209	35630	33473	33525							0.11034546082123597
LSPHLLFLHLG	11	Unmodified	_LSPHLLFLHLG_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	623.868966	1245.72338	0.32064	0.00020004	2.989	0.0018648	3.3097	0.0020648	623.8704377799112	103.51	0.34843	103.34	103.2	103.55	-0.17034	0.037223	-7.8986E-05	NaN	20.947	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57425	+		48210	35630	33473	33525							0.11034546082123597
LSPHLPGELAI	11	Unmodified	_LSPHLPGELAI_					0	0	0		nc|ENSG00000103168|Q15572|TAF1C;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572-4|TAF1C;ENST00000544090.5_1_16:84215181-84217023:-|nuORF;ENST00000564208.5_1_16:84215181-84220577:-|nuORF;ENST00000537450.5_1_16:84215181-84219087:-|nuORF;ENST00000564774.5_1_16:84215181-84218621:-|nuORF;ENST00000566903.5_1_16:84212549-84216700:-|nuORF	nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.7056274414062	2	573.829506	1145.64446	-0.28311	-0.00016246	-0.091207	-5.2337E-05	-0.37432	-0.00021479	573.8292226220262	63.324	0.47348	63.14	62.915	63.388	-0.18386					25	11	3	0	0	0	0.024771	1	7123	7123		16.007	1.8697	1	407400			48211	18138	33474	33526	53584	53584					0.07746274057194569
LSPHPPPLAG	10	Unmodified	_LSPHPPPLAG_					0	0	0			REV__ENSG00000204335|ENST00000375281|SP5	REV__ENSG00000204335|ENST00000375281|SP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2785339355469	2	493.276909	984.539266	0.73489	0.0003625	2.3259	0.0011473	3.0608	0.0015098	493.2779568879019	20.572	1.2754	20.376	20.187	21.462	-0.19577					49	25	2	0	0	0	1.0393	1	544	544		40.778	6.6056	1	559480	+		48212	28592	33475	33527	53585	53585					0.04637777651419128
LSPHRIFL	8	Unmodified	_LSPHRIFL_					0	0	0			REV__ENST00000379982.7_1_5:95091424-95099296:+|nuORF	REV__ENST00000379982.7_1_5:95091424-95099296:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7499084472656	2	491.795269	981.575986	-0.59032	-0.00029032	1.1148	0.00054826	0.52449	0.00025794	491.7957832718571	46.227	0.80795	46.025	45.492	46.3	-0.20226					32	21	2	0	0	0	0.027866	1	4393	4393		19.36	4.6959	1	828420	+		48213	31457	33476	33528	53586	53586					0.08446074267976655
LSPIAPSSYG	10	Unmodified	_LSPIAPSSYG_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2922668457031	2	496.258382	990.502212	0.31463	0.00015614	-2.9809	-0.0014793	-2.6662	-0.0013231	496.257075853877	68.223	0.52715	67.968	67.74	68.267	-0.25516					17	12	2	0	0	0	0.03519	1	7898	7898		35.618	7.736	1	128780	+		48214	23690	33477	33529	53587	53587					0.00658061315004943
LSPILCPCPQ	10	Unmodified	_LSPILCPCPQ_					0	0	0		ENST00000475935.5_1_1:33547106-33548240:+|nuORF	ENST00000475935.5_1_1:33547106-33548240:+|nuORF	ENST00000475935.5_1_1:33547106-33548240:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7733154296875	2	535.772288	1069.53002	-0.74284	-0.00039799	2.2567	0.0012091	1.5139	0.00081109	535.7733998428846	41.747	0.8009	41.519	41.006	41.807	-0.2278					52	20	4	0	0	0	0.60198	2	3690	3690;3713		76.774	10.345	1	3287400			48215	15075	33478	33530	53588;53589	53588					-0.0019607502076723904
LSPINFSN	8	Unmodified	_LSPINFSN_					0	0	0			REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|64|1|anti-sense	REV__L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|64|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.23175048828125	2	446.232168	890.449782	0.033022	1.4735E-05	-0.72532	-0.00032366	-0.6923	-0.00030893	446.23190028192755	101.14	1.7305	101.14	100.62	102.35	0					118	39	5	0	0	0	0.97794	1	12914	12914		40.778	1.972	1	6954500	+		48216	36218	33479	33531	53590	53590					0.00017522972052574914
LSPKHSFTKG	10	Unmodified	_LSPKHSFTKG_					0	0	0			REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	REV__nc|ENSG00000189190|Q6ZNG1|ZNF600	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.783203125	2	551.306198	1100.59784	-1.1945	-0.00065852	-1.8508	-0.0010204	-3.0453	-0.0016789	551.305161453508	27.413	1.0699	27.494	26.841	27.911	0.081291					64	28	3	0	0	0	0.03519	1	1369	1369		31.634	23.83	1	1123200	+		48217	28108	33480	33532	53591	53591					0.05156834225863349
LSPKKRAE	8	Unmodified	_LSPKKRAE_					0	0	0			REV__ITPKB|p.K758E|1|0.07|ENSG00000143772|chr1:226642100-226642100|T/C|missense_variant	REV__ITPKB|p.K758E|1|0.07|ENSG00000143772|chr1:226642100-226642100|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.8130187988281	2	464.782359	927.550165	-0.84781	-0.00039405	-0.77938	-0.00036224	-1.6272	-0.00075629	464.78182952211864	38.11	0.20235	37.891	37.755	37.957	-0.21848					7	5	2	0	0	0	0.027866	1	3094	3094		31.955	0	1	104090	+		48218	36160	33481	33533	53592	53592					0.08349180025697933
LSPLFHGQF	9	Unmodified	_LSPLFHGQF_					0	0	0			REV__ENST00000580377.2_1_17:26905076-26905435:-|nuORF	REV__ENST00000580377.2_1_17:26905076-26905435:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.750732421875	2	523.276909	1044.53927	0.019435	1.017E-05	-3.1337	-0.0016398	-3.1142	-0.0016296	523.2752014577653	39.733	0.83367	39.503	39.018	39.851	-0.23021					53	21	4	0	0	0	0.024374	1	3369	3369		19.104	3.4617	1	785060	+		48219	35515	33482	33534	53593	53593					0.01877777651429824
LSPLHLQP	8	Unmodified	_LSPLHLQP_					0	0	0		ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.24334716796875	2	452.766178	903.517802	0.81721	0.00037001	-0.25175	-0.00011398	0.56546	0.00025602	452.76580153582444	54.245	0.65705	54.343	54.15	54.807	0.098015					22	18	2	0	0	0	0.027866	1	5814	5814		40.573	7.057	1	189340			48220	14529	33483	33535	53594	53594					0.06218392622713509
LSPLHLQP	8	Unmodified	_LSPLHLQP_					0	0	0		ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	452.766178	903.517802	-0.16691	-7.557E-05	0.51329	0.0002324	0.34638	0.00015683	452.76607990971087	54.414	0.65533	54.414	54.214	54.869	0	-0.030479	0.0005667	NaN	31.955	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166220			48221	14529	33483	33535							0.06218392622713509
LSPLHLQP	8	Unmodified	_LSPLHLQP_					0	0	0		ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.766178	903.517802	0.15321	6.9367E-05	0.65193	0.00029517	0.80514	0.00036454	452.76598764098935	54.567	0.77293	54.416	54.084	54.857	-0.15036	-0.028473	0.00069225	NaN	31.955	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166360			48222	14529	33483	33535							0.06218392622713509
LSPLHLQP	8	Unmodified	_LSPLHLQP_					0	0	0		ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	452.766178	903.517802	-0.12625	-5.716E-05	0.015053	6.8156E-06	-0.11119	-5.0345E-05	452.7660579507328	54.628	0.76448	54.482	54.109	54.873	-0.14609	0.037332	0.00011553	NaN	31.955	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669670			48223	14529	33483	33535							0.06218392622713509
LSPLHLQP	8	Unmodified	_LSPLHLQP_					0	0	0		ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	452.766178	903.517802	-0.070358	-3.1856E-05	0.068095	3.0831E-05	-0.0022623	-1.0243E-06	452.7659900996233	54.756	0.71735	54.525	54.28	54.997	-0.23087	0.080053	0.00016356	NaN	31.955	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728950			48224	14529	33483	33535							0.06218392622713509
LSPLHLQP	8	Unmodified	_LSPLHLQP_					0	0	0		ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	ENST00000451997.5_1_22:38061874-38062153:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	452.766178	903.517802	0.85619	0.00038765	-0.72079	-0.00032635	0.1354	6.1303E-05	452.76559688308816	54.694	0.78116	54.488	54.159	54.941	-0.20613	0.043328	-0.0005508	NaN	31.955	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525430			48225	14529	33483	33535							0.06218392622713509
LSPLMLPNL	9	Unmodified	_LSPLMLPNL_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.29241943359375	2	499.291171	996.567789	-0.11526	-5.755E-05	3.9855	0.0019899	3.8702	0.0019324	499.29311566896223	47.471	1.3694	47.471	47.216	48.585	0					69	40	4	0	0	0	0.53979	1	4757	4757		56.721	5.3856	1	5179800			48226	9497	33484	33536	53595	53595					0.06936759236339185
LSPLNELPP	9	Unmodified	_LSPLNELPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2741394042969	2	490.276575	978.538597	-0.90452	-0.00044346	-2.6219	-0.0012855	-3.5264	-0.0017289	490.2750858074762	75.536	1.0746	75.536	75.194	76.268	0					90	28	4	0	0	0	0.057894	2	9299	9275;9299		125.81	15.477	1	10852000	+		48227	27555	33485	33537	53596;53597	53597					0.04846938211710494
LSPLNELPP	9	Unmodified	_LSPLNELPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.247802734375	2	490.276575	978.538597	0.094966	4.6559E-05	-0.34956	-0.00017138	-0.2546	-0.00012482	490.2762311629104	68.237	0.4948	68.237	67.987	68.482	0					20	12	2	0	0	0	0.024447	1	8204	8204		40.778	25.136	1	261620	+		48228	27555	33485	33537	53598	53598					0.04846938211710494
LSPLNELPP	9	Unmodified	_LSPLNELPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.27471923828125	2	490.276575	978.538597	-0.44078	-0.00021611	-3.0523	-0.0014965	-3.493	-0.0017126	490.274863199453	75.777	0.99203	75.532	75.191	76.183	-0.24455					83	26	4	0	0	0	0.033448	4	9273	9263;9273;9285;9299		138.83	24.24	1	11390000	+		48229	27555	33485	33537	53599;53600;53601;53602	53600					0.04846938211710494
LSPLNELPP	9	Unmodified	_LSPLNELPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.27557373046875	2	490.276575	978.538597	0.082561	4.0478E-05	-3.7554	-0.0018412	-3.6729	-0.0018007	490.2746491718579	75.545	0.877	75.556	75.25	76.127	0.010376					69	23	4	0	0	0	0.057894	4	9193	9193;9203;9215;9230		125.81	24.602	1	12327000	+		48230	27555	33485	33537	53603;53604;53605;53606	53603					0.04846938211710494
LSPLNELPP	9	Unmodified	_LSPLNELPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.276575	978.538597	-0.89972	-0.00044111	1.1133	0.00054584	0.21362	0.00010473	490.2768088498309	68.604	0.80887	68.343	67.98	68.789	-0.26166	0.043736	0.00089194	NaN	47.657	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553290	+		48231	27555	33485	33537							0.04846938211710494
LSPLNELPP	9	Unmodified	_LSPLNELPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.276575	978.538597	0.63648	0.00031205	-0.16986	-8.3277E-05	0.46662	0.00022877	490.27612720185533	68.485	0.67762	68.254	68	68.677	-0.23048	-0.044601	-0.0003663	NaN	47.657	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535860	+		48232	27555	33485	33537							0.04846938211710494
LSPLPCQLL	9	Unmodified	_LSPLPCQLL_					0	0	0			REV__nc|ENSG00000168062|Q8N1L9-2|BATF2	REV__nc|ENSG00000168062|Q8N1L9-2|BATF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7696533203125	2	492.283346	982.552139	-0.23197	-0.00011419	1.8399	0.00090576	1.6079	0.00079156	492.28425956758286	42.234	0.43161	42.26	41.961	42.393	0.026016					23	12	3	0	0	0	0.024381	1	3821	3821		37.159	8.0096	1	147300	+		48233	26224	33486	33538	53607	53607					0.06016472719295507
LSPLRNSDL	9	Unmodified	_LSPLRNSDL_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.78204345703125	2	507.782556	1013.55056	0.06414	3.2569E-05	-0.30742	-0.0001561	-0.24328	-0.00012353	507.7823300627731	42.309	1.1301	42.309	42.02	43.15	0					78	31	4	0	0	0	0.42604	1	3878	3878		64.207	5.4253	1	6810800	+		48234	25084	33487	33539	53608	53608					0.04432554954905754
LSPLSQPLV	9	Unmodified	_LSPLSQPLV_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.28680419921875	2	477.286943	952.559333	0.80469	0.00038407	-0.62783	-0.00029966	0.17686	8.4413E-05	477.2864697471457	54.224	1.0394	54.322	53.876	54.916	0.098015					70	29	3	0	0	0	0.39228	1	5839	5839		66.429	13.078	1	4111600	+		48235	25862	33488	33540	53609	53609					0.08115528591383736
LSPLTTTIN	9	Unmodified	_LSPLTTTIN_					0	0	0			REV__DSCAM|p.Q1147L|1|0.36|ENSG00000171587|chr21:40133976-40133976|T/A|missense_variant	REV__DSCAM|p.Q1147L|1|0.36|ENSG00000171587|chr21:40133976-40133976|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.73541259765625	2	480.274032	958.533512	-0.048923	-2.3497E-05	-1.9149	-0.00091968	-1.9638	-0.00094318	480.27299717952786	59.554	0.59202	59.639	59.314	59.906	0.085682					46	15	5	0	0	0	0.024021	1	6717	6717		68.787	17.451	1	1545400	+		48236	19709	33489	33541	53610	53610					0.052586343490816034
LSPLTWSCEL	10	Unmodified	_LSPLTWSCEL_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.7843017578125	2	574.78645	1147.55835	-0.24961	-0.00014347	-3.0882	-0.001775	-3.3378	-0.0019185	574.7846923137164	52.602	1.2122	52.475	51.93	53.143	-0.12705					105	30	5	0	0	0	0.74632	1	5471	5471		64.207	5.9773	1	3201900	+		48237	20698	33490	33542	53611	53611					-0.009530538398394128
LSPLVCAKYGW	11	Unmodified	_LSPLVCAKYGW_					0	0	0		nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	nc|ENSG00000091732|Q86WB0-3|ZC3HC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.7607116699219	3	412.886365	1235.63727	-0.86604	-0.00035758	1.3935	0.00057537	0.52749	0.00021779	412.8879115072269	48.779	0.39696	48.499	48.359	48.756	-0.27977					30	10	5	0	0	0	0.024731	1	4837	4837		30.569	9.5366	1	264730			48238	1969	33491	33543	53612	53612					0.028872181851056666
LSPMFTVLPL	10	Unmodified	_LSPMFTVLPL_					0	0	0		nc|ENSG00000174151|Q8N8Q1-4|CYB561D1	nc|ENSG00000174151|Q8N8Q1-4|CYB561D1	nc|ENSG00000174151|Q8N8Q1-4|CYB561D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.310791015625	2	559.319928	1116.6253	0.20953	0.00011719	3.0021	0.0016791	3.2116	0.0017963	559.8231707826927	51.407	0.3896	51.407	51.178	51.568	0					14	10	2	0	0	0	0.03519	1	5473	5473		21.96	7.095	1	63009			48239	18527	33492	33544	53613	53613					0.07165601441920444
LSPNWVSP	8	Unmodified	_LSPNWVSP_					0	0	0		nc|ENSG00000257198|Q63HN1|SPATA31F2P	nc|ENSG00000257198|Q63HN1|SPATA31F2P	nc|ENSG00000257198|Q63HN1|SPATA31F2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2693786621094	2	450.23471	898.454868	-0.32359	-0.00014569	-4.0753	-0.0018349	-4.3989	-0.0019805	450.2334251847224	38.816	0.59737	38.816	38.515	39.112	0					21	15	2	0	0	0	0.027866	1	3238	3238		53.351	0	1	561460			48240	18775	33493	33545	53614	53614					0.001578268346747791
LSPPIPPLSC	10	Unmodified	_LSPPIPPLSC_					0	0	0		ENST00000567998.5_1_16:28621482-28621938:-|nuORF	ENST00000567998.5_1_16:28621482-28621938:-|nuORF	ENST00000567998.5_1_16:28621482-28621938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.7618408203125	2	512.280803	1022.54705	-0.26787	-0.00013723	0.15848	8.1185E-05	-0.10939	-5.604E-05	512.2805809455286	95.032	0.51775	94.88	94.624	95.142	-0.15186					22	11	3	0	0	0	0.03519	1	11716	11716		49.442	16.629	1	158580			48241	16972	33494	33546	53615	53615					0.036681688566886805
LSPPIPPLSC	10	Unmodified	_LSPPIPPLSC_					0	0	0		ENST00000567998.5_1_16:28621482-28621938:-|nuORF	ENST00000567998.5_1_16:28621482-28621938:-|nuORF	ENST00000567998.5_1_16:28621482-28621938:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.280803	1022.54705	-0.36743	-0.00018823	-0.18115	-9.2799E-05	-0.54858	-0.00028103	512.7822443865049	94.991	0.5609	94.854	94.594	95.155	-0.13728	-0.013076	-0.00014802	NaN	49.442	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158870			48242	16972	33494	33546							0.036681688566886805
LSPPLLQWAP	10	Unmodified	_LSPPLLQWAP_					0	0	0		ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	ENST00000525371.1_1_8:145542007-145542573:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3248901367188	2	561.321317	1120.62808	-0.090831	-5.0985E-05	-3.4987	-0.0019639	-3.5895	-0.0020149	561.3194077083884	68.107	0.49945	68.107	67.87	68.369	0					32	12	4	0	0	0	0.03519	1	8148	8148		20.947	0	1	1246700			48243	16093	33495	33547	53616	53616					0.07259192891092425
LSPPLVLCP	9	Unmodified	_LSPPLVLCP_					0	0	0			REV__ENST00000460006.5_1_20:5176891-5176963:+|nuORF	REV__ENST00000460006.5_1_20:5176891-5176963:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.7748718261719	2	469.772614	937.530675	0.38632	0.00018148	3.229	0.0015169	3.6153	0.0016984	469.77401210768073	43.868	0.77631	43.899	43.593	44.369	0.030827					37	21	2	0	0	0	0.55828	1	4081	4081		55.504	7.5886	1	5803600	+		48244	32838	33496	33548	53617	53617					0.059410876905758414
LSPPLVLCP	9	Unmodified	_LSPPLVLCP_					0	0	0			REV__ENST00000460006.5_1_20:5176891-5176963:+|nuORF	REV__ENST00000460006.5_1_20:5176891-5176963:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	469.772614	937.530675	0.38632	0.00018148	3.229	0.0015169	3.6153	0.0016984	469.77401210768073	43.868	0.77631	43.899	43.593	44.369	0.030827	0.017224	-0.00053871	NaN	55.504	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5803600	+		48245	32838	33496	33548							0.059410876905758414
LSPPPPPLL	9	Unmodified	_LSPPPPPLL_					0	0	0			REV__ENST00000524186.1_1_6:56407446-56407581:-|nuORF	REV__ENST00000524186.1_1_6:56407446-56407581:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.25579833984375	2	465.786579	929.558604	-0.23858	-0.00011113	-4.0451	-0.0018842	-4.2837	-0.0019953	465.7845695314256	54.943	0.85655	54.943	54.393	55.249	0					51	24	3	0	0	0	0.024412	1	5974	5974		24.203	4.8428	1	938100	+		48246	34374	33497	33549	53618	53618					0.09100733942329953
LSPPPPPLL	9	Unmodified	_LSPPPPPLL_					0	0	0			REV__ENST00000524186.1_1_6:56407446-56407581:-|nuORF	REV__ENST00000524186.1_1_6:56407446-56407581:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.786579	929.558604	-0.049564	-2.3086E-05	-4.3394	-0.0020212	-4.389	-0.0020443	465.78371274079745	55.001	0.35959	54.77	54.638	54.997	-0.23087	-0.11492	-0.00020261	NaN	17.365	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98501	+		48247	34374	33497	33549							0.09100733942329953
LSPPPPPLL	9	Unmodified	_LSPPPPPLL_					0	0	0			REV__ENST00000524186.1_1_6:56407446-56407581:-|nuORF	REV__ENST00000524186.1_1_6:56407446-56407581:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.786579	929.558604	0.16015	7.4597E-05	-4.3054	-0.0020054	-4.1452	-0.0019308	465.784528659154	55.101	0.25452	54.895	54.758	55.013	-0.20613	0.010065	-0.00017091	NaN	17.365	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109430	+		48248	34374	33497	33549							0.09100733942329953
LSPPREDQS	9	Unmodified	_LSPPREDQS_					0	0	0		ENST00000260276.7_1_11:111750013-111750136:+|nuORF	ENST00000260276.7_1_11:111750013-111750136:+|nuORF	ENST00000260276.7_1_11:111750013-111750136:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8042602539062	2	514.753995	1027.49344	-0.17378	-8.9455E-05	4.11	0.0021156	3.9362	0.0020262	514.7560966812101	58.626	0.72983	58.438	58.05	58.779	-0.18795					41	17	4	0	0	0	0.024288	1	6417	6417		36.447	0	1	1324600			48249	11445	33498	33550	53619	53619					-0.019209123214750434
LSPPRTKNI	9	Unmodified	_LSPPRTKNI_					0	0	0		nc|ENSG00000285253|Q6N043-4|ZNF280D;ENST00000560121.1_1_15:56958875-56971015:-|nuORF;nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D	nc|ENSG00000285253|Q6N043-4|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.7872314453125	2	513.308741	1024.60293	0.51753	0.00026565	3.4405	0.0017661	3.9581	0.0020317	513.3104196980802	71.558	0.80223	71.27	71.036	71.838	-0.28858					29	20	3	0	0	0	0.024397	1	8623	8623		56.721	17.468	1	367420			48250	5172;18815	33499	33551	53620	53620					0.09161138088529697
LSPQPWAPLLT	11	Unmodified	_LSPQPWAPLLT_					0	0	0			REV__ENST00000494126.6_1_5:177638946-177649471:-|nuORF	REV__ENST00000494126.6_1_5:177638946-177649471:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.2454528808594	3	408.23253	1221.67576	0.55158	0.00022517	4.4388	0.0018121	4.9904	0.0020372	408.234530602739	31.655	0.88047	31.655	31.343	32.224	0					39	21	3	0	0	0	0.024846	1	2121	2121		8.0344	2.0333	1	808100	+		48251	33454	33500	33552	53621	53621					0.07378847091263196
LSPQQPCSP	9	Unmodified	_LSPQQPCSP_					0	0	0			REV__ENST00000307564.8_1_9:117096546-117096738:-|nuORF	REV__ENST00000307564.8_1_9:117096546-117096738:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2845764160156	2	478.728935	955.443317	0.12828	6.141E-05	-3.197	-0.0015305	-3.0687	-0.0014691	478.7272555901959	54.945	1.804	54.795	54.375	56.179	-0.15036					85	50	3	0	0	0	0.024367	1	6149	6149		52.937	10.541	1	536630	+		48252	30139	33501	33553	53622	53622					-0.03618738250986553
LSPQQPCSP	9	Unmodified	_LSPQQPCSP_					0	0	0			REV__ENST00000307564.8_1_9:117096546-117096738:-|nuORF	REV__ENST00000307564.8_1_9:117096546-117096738:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.728935	955.443317	0.62197	0.00029775	-3.8846	-0.0018597	-3.2626	-0.0015619	478.7269502509464	54.824	2.5318	54.824	54.214	56.745	0	0.022139	-0.00046125	NaN	44.377	110	71	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513150	+		48253	30139	33501	33553							-0.03618738250986553
LSPQQPCSP	9	Unmodified	_LSPQQPCSP_					0	0	0			REV__ENST00000307564.8_1_9:117096546-117096738:-|nuORF	REV__ENST00000307564.8_1_9:117096546-117096738:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.728935	955.443317	0.47049	0.00022524	-4.474	-0.0021418	-4.0035	-0.0019166	478.72665000881256	55.079	0.40177	54.873	54.611	55.013	-0.20613	0.070944	-0.0010255	NaN	44.377	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69643	+		48254	30139	33501	33553							-0.03618738250986553
LSPQRALL	8	Unmodified	_LSPQRALL_					0	0	0		nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENSG00000160753|ENST00000368352|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	nc|ENSG00000160753|Q9BVN2-4|RUSC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.8658752441406	2	449.279452	896.544351	-0.58304	-0.00026195	0.038451	1.7275E-05	-0.54459	-0.00024467	449.2794504934842	48.07	0.37477	47.794	47.63	48.004	-0.27598					15	9	2	0	0	0	0.027866	1	4753	4753		47.916	18.766	1	127670			48255	6837	33502	33554	53623	53623					0.09194081514044683
LSPQRAPE	8	Unmodified	_LSPQRAPE_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.765625	2	449.243067	896.47158	0.39807	0.00017883	4.1347	0.0018575	4.5328	0.0020363	449.2447363188603	72.787	0.41496	72.797	72.529	72.944	0.0096512					12	9	2	0	0	0	0.027866	1	8790	8790		20.947	0	1	67404			48256	9893	33503	33555	53624	53624					0.019203277206088387
LSPQRSVTV	9	Unmodified	_LSPQRSVTV_					0	0	0			REV__ENSG00000092421|ENST00000343348|SEMA6A	REV__ENSG00000092421|ENST00000343348|SEMA6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7850646972656	2	493.785099	985.555644	-0.57767	-0.00028524	0.81004	0.00039999	0.23237	0.00011474	493.78527552627673	56.798	1.0005	56.631	56.001	57.001	-0.1672					50	25	4	0	0	0	0.23085	1	6178	6178		84.916	5.2029	1	2583200	+		48257	20932	33504	33556	53625	53625					0.06228858817519267
LSPQRSVTV	9	Unmodified	_LSPQRSVTV_					0	0	0			REV__ENSG00000092421|ENST00000343348|SEMA6A	REV__ENSG00000092421|ENST00000343348|SEMA6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.78533935546875	2	493.785099	985.555644	0.25844	0.00012761	-0.44391	-0.0002192	-0.18547	-9.158E-05	493.7847408991358	56.944	0.64471	56.719	56.426	57.07	-0.2248					44	16	4	0	0	0	0.23085	1	6184	6184		84.916	5.4645	1	3980500	+		48258	20932	33504	33556	53626	53626					0.06228858817519267
LSPRGLLHPV	10	Unmodified	_LSPRGLLHPV_					0	0	0		nc|ENSG00000161558|Q96AN5-3|TMEM143	nc|ENSG00000161558|Q96AN5-3|TMEM143	nc|ENSG00000161558|Q96AN5-3|TMEM143	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2748413085938	2	544.832383	1087.65021	-1.0438	-0.00056872	3.9946	0.0021764	2.9508	0.0016077	544.8343164480596	78.193	1.1187	78.209	77.739	78.857	0.015907					36	26	2	0	0	0	0.03519	1	9538	9538		45.972	1.8554	1	92243			48259	18432	33505	33557	53627	53627					0.10989417359519393
LSPRLLPH	8	Unmodified	_LSPRLLPH_					0	0	0		ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7377624511719	2	466.787444	931.560336	-0.40487	-0.00018899	1.3043	0.00060882	0.89942	0.00041984	466.78779458522365	45.399	0.53289	45.399	45.181	45.714	0					26	15	3	0	0	0	0.027866	1	4377	4377		40.573	7.057	1	316130			48260	17524	33506	33558	53628	53628					0.09181787750935655
LSPRLLPH	8	Unmodified	_LSPRLLPH_					0	0	0		ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	ENST00000602351.5_1_19:49645338-49651464:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.787444	931.560336	0.55285	0.00025806	0.41589	0.00019413	0.96874	0.0004522	466.7873548185078	45.369	0.46709	45.412	45.214	45.681	0.043877	0.045895	-0.0005573	NaN	40.573	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334190			48261	17524	33506	33558							0.09181787750935655
LSPRNVGLL	9	Unmodified	_LSPRNVGLL_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENST00000563604.1_1_15:43017617-43017824:-|nuORF;ENSG00000140326|ENST00000356231|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7981262207031	2	484.798009	967.581465	0.11867	5.753E-05	-1.1117	-0.00053896	-0.99305	-0.00048143	484.7976554584649	58.741	1.6893	58.833	58.297	59.986	0.091217					126	45	4	0	0	0	0.45795	1	6640	6640		62.107	6.6032	1	93907000			48262	18334	33507	33559	53629	53629					0.09637753059814713
LSPRRSLLP	9	Unmodified	_LSPRRSLLP_					0	0	0		ENST00000339486.7_1_18:21033320-21033413:+|nuORF	ENST00000339486.7_1_18:21033320-21033413:+|nuORF	ENST00000339486.7_1_18:21033320-21033413:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7664794921875	2	519.824558	1037.63456	-0.46693	-0.00024272	4.2135	0.0021903	3.7466	0.0019476	519.8253204772474	47.857	0.31694	47.704	47.51	47.827	-0.15301					22	9	3	0	0	0	0.024292	1	4777	4777		68.787	16.488	1	201810			48263	12460	33508	33560	53630	53630					0.11725130842478393
LSPRTVLVL	9	Unmodified	_LSPRTVLVL_					0	0	0		CON__A2I7N1	CON__A2I7N1	CON__A2I7N1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.3238220214844	2	499.32386	996.633166	1.3587	0.00067843	-1.7525	-0.00087507	-0.39382	-0.00019664	499.3229836235811	63.717	1.9239	63.717	63.336	65.26	0					135	52	4	0	0	0	0.23085	1	7463	7463		84.916	5.4645	1	34948000		+	48264	478	33509	33561	53631	53631					0.1347149675369792
LSPSEEETNN	10	Unmodified	_LSPSEEETNN_					0	0	0		ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.272216796875	2	560.243657	1118.47276	-0.34848	-0.00019523	2.2568	0.0012644	1.9083	0.0010691	560.2473727407158	93.238	0.25366	93.245	93.055	93.309	0.0077209					11	5	3	0	0	0	0.03519	1	11749	11749		67.494	0	1	55638			48265	9689	33510	33562	53632	53632					-0.08173547491787758
LSPSLVRAL	9	Unmodified	_LSPSLVRAL_					0	0	0			REV__nc|ENSG00000184058|O43435-3|TBX1	REV__nc|ENSG00000184058|O43435-3|TBX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.30047607421875	2	478.300384	954.586216	0.056827	2.718E-05	0.18078	8.6466E-05	0.2376	0.00011365	478.30033460004853	65.48	1.3155	65.517	64.928	66.244	0.037384					79	35	3	0	0	0	0.27161	1	7694	7694		79.451	2.6044	1	4486500	+		48266	27634	33511	33563	53633	53633					0.10710637202555517
LSPSPHGLPL	10	Unmodified	_LSPSPHGLPL_					0	0	0		SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|11|2|sense	SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|11|2|sense	SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|11|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.82818603515625	2	509.290017	1016.56548	0.071956	3.6646E-05	2.8135	0.0014329	2.8854	0.0014695	509.291294388647	71.709	1.6551	71.448	70.69	72.345	-0.26199					66	39	2	0	0	0	0.03519	1	8385	8385		34.173	0	1	490580			48267	38040	33512	33564	53634	53634					0.05786046822890967
LSPSRLAVK	9	Unmodified	_LSPSRLAVK_					0	0	0			REV__ENST00000372518.4_1_20:44519377-44519782:-|nuORF	REV__ENST00000372518.4_1_20:44519377-44519782:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2369384765625	2	485.805834	969.597115	-0.39761	-0.00019316	0.21369	0.00010381	-0.18392	-8.9348E-05	485.80585971638243	35.051	0.83513	34.838	34.56	35.395	-0.21246					57	20	4	0	0	0	0.024447	1	2689	2689		25.574	0	1	1658500	+		48268	31206	33513	33565	53635	53635					0.11110039576840336
LSPSTLLKAV	10	Unmodified	_LSPSTLLKAV_					0	0	0			REV__ENSG00000118900|ENST00000262376|UBN1	REV__ENSG00000118900|ENST00000262376|UBN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7898559570312	2	514.82115	1027.62775	-0.15473	-7.9658E-05	-2.0228	-0.0010414	-2.1775	-0.001121	514.8195674358105	41.669	0.71109	41.537	41.042	41.753	-0.13219					32	19	2	0	0	0	0.03519	1	3743	3743		58.23	3.4536	1	382260	+		48269	22429	33514	33566	53636	53636					0.1150377317121638
LSPSTLLKAV	10	Unmodified	_LSPSTLLKAV_					0	0	0			REV__ENSG00000118900|ENST00000262376|UBN1	REV__ENSG00000118900|ENST00000262376|UBN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.82115	1027.62775	-0.33232	-0.00017109	-0.98747	-0.00050837	-1.3198	-0.00067946	514.820471633365	41.659	0.38952	41.428	41.119	41.508	-0.2303	-0.054376	0.0002188	NaN	58.23	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108370	+		48270	22429	33514	33566							0.1150377317121638
LSPSWISPGV	10	Unmodified	_LSPSWISPGV_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7798461914062	2	521.782025	1041.5495	-0.41412	-0.00021608	-2.2806	-0.00119	-2.6947	-0.001406	521.7806462497466	85.661	1.2711	85.604	85.27	86.541	-0.05761					73	29	4	0	0	0	0.82838	1	10721	10721		58.782	0.97068	1	2172600	+		48271	20095	33515	33567	53637	53637					0.030383405859993218
LSPTQALPP	9	Unmodified	_LSPTQALPP_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.287841796875	2	462.263468	922.512382	1.1905	0.00055031	-0.60018	-0.00027744	0.5903	0.00027287	462.26302408133216	59.474	0.97711	59.273	58.888	59.866	-0.20016					43	26	2	0	0	0	0.022484	1	6796	6796		94.006	25.22	1	687250			48272	1504	33516	33568	53638	53638					0.04802669040236651
LSPVFSGAGG	10	Unmodified	_LSPVFSGAGG_					0	0	0		ENST00000553183.5_1_12:104359344-104359446:-|nuORF	ENST00000553183.5_1_12:104359344-104359446:-|nuORF	ENST00000553183.5_1_12:104359344-104359446:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.2318115234375	2	446.232168	890.449782	0.27475	0.0001226	-0.89263	-0.00039832	-0.61787	-0.00027572	446.2318420635589	101.24	1.993	101.24	100.76	102.76	-0.0054474					118	45	5	0	0	0	1.0004	1	12870	12870		45.952	1.8352	1	6672200			48273	16633	33517	33569	53639	53639					0.00017522972063943598
LSPVFSGAGG	10	Unmodified	_LSPVFSGAGG_					0	0	0		ENST00000553183.5_1_12:104359344-104359446:-|nuORF	ENST00000553183.5_1_12:104359344-104359446:-|nuORF	ENST00000553183.5_1_12:104359344-104359446:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	446.2319641113281	2	446.232168	890.449782	0.30845	0.00013764	-1.3943	-0.00062219	-1.0859	-0.00048455	446.23152023452957	101.79	1.2282	101.62	101.15	102.37	-0.17178					92	28	5	0	0	0	1.0004	1	12646	12646		45.952	5.1738	1	4822100			48274	16633	33517	33569	53640	53640					0.00017522972063943598
LSPVQSLTSF	10	Unmodified	_LSPVQSLTSF_					0	0	0			REV__ENSG00000111961|ENST00000367467|SASH1	REV__ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.791015625	2	539.792589	1077.57063	-0.77958	-0.00042081	-2.9243	-0.0015785	-3.7039	-0.0019993	539.7910619150618	65.901	0.60562	65.931	65.661	66.267	0.030098					44	15	4	0	0	0	0.77808	1	7753	7753		62.107	1.9892	1	7164800	+		48275	21959	33518	33570	53641	53641					0.03494305894832905
LSPVRPIIA	9	Unmodified	_LSPVRPIIA_					0	0	0			REV__RPP38|p.E237Pfs*20|1|0.05|ENSG00000152464|chr10:15104022-15104023|-/CCACA|frameshift_variant	REV__RPP38|p.E237Pfs*20|1|0.05|ENSG00000152464|chr10:15104022-15104023|-/CCACA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.3111572265625	2	483.310752	964.606951	-0.25527	-0.00012338	0.77896	0.00037648	0.52368	0.0002531	483.3108401721876	67.045	0.93794	67.045	66.63	67.568	0					68	22	4	0	0	0	0.85329	1	7998	7998		35.618	1.4457	1	2132700	+		48276	24843	33519	33571	53642	53642					0.12323227582226082
LSPWPSRPPTV	11	Unmodified	_LSPWPSRPPTV_					0	0	0		ENST00000308595.9_1_11:67053337-67053520:+|nuORF	ENST00000308595.9_1_11:67053337-67053520:+|nuORF	ENST00000308595.9_1_11:67053337-67053520:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.8949279785156	3	412.896029	1235.66626	0.054663	2.257E-05	-3.6189	-0.0014942	-3.5643	-0.0014717	412.8945294662656	30.429	0.9638	30.279	29.967	30.931	-0.14952					70	22	4	0	0	0	1.0327	1	1914	1914		29.551	0.97402	1	2331000			48277	12033	33520	33572	53643	53643					0.05785078805752164
LSPYSPIL	8	Unmodified	_LSPYSPIL_					0	0	0		TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.7582702636719	2	445.255111	888.49567	-0.21696	-9.6603E-05	0.27759	0.0001236	0.06063	2.6996E-05	445.2546418022147	50.3	2.3078	50.381	49.435	51.743	0.08099					109	65	3	0	0	0	0.027866	1	5371	5371		26.796	7.4361	1	717500			48278	38086	33521	33573	53644	53644					0.046961681542939004
LSPYSPIL	8	Unmodified	_LSPYSPIL_					0	0	0		TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	445.255111	888.49567	0.17456	7.7724E-05	-5.3811	-0.002396	-5.2066	-0.0023183	445.25443913092835	50.381	1.4303	50.275	49.745	51.175	-0.10558	-0.024013	-0.0041422	NaN	19.36	64	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	786200			48279	38086	33521	33573							0.046961681542939004
LSPYSPIL	8	Unmodified	_LSPYSPIL_					0	0	0		TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	TMEM184B|p.V246I|1|0.18|ENSG00000198792|chr22:38225475-38225475|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	445.255111	888.49567	0.08999	4.0069E-05	-3.8873	-0.0017309	-3.7974	-0.0016908	445.25448322601596	50.521	1.5075	50.241	49.802	51.31	-0.27977	-0.058258	-0.0028119	NaN	19.36	66	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1075400			48280	38086	33521	33573							0.046961681542939004
LSQAVDALYI	10	Unmodified	_LSQAVDALYI_					0	0	0		ENSG00000111536|ENST00000229134|IL26	ENSG00000111536|ENST00000229134|IL26	ENSG00000111536|ENST00000229134|IL26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7645874023438	2	546.800414	1091.58628	-0.72381	-0.00039578	0.26011	0.00014223	-0.4637	-0.00025355	546.8004221391593	67.558	0.44025	67.269	67.03	67.47	-0.28834					34	10	4	0	0	0	0.03519	1	8052	8052		75.043	0	1	1075900			48281	3122	33522	33574	53645	53645					0.044145924118765834
LSQCFLSL	8	Carbamidomethyl (C)	_LSQC(Carbamidomethyl (C))FLSL_	LSQC(1)FLSL		LSQC(100)FLSL		0	1	0		ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2493591308594	2	484.249503	966.484453	-1.136	-0.00055009	1.3245	0.00064137	0.1885	9.1281E-05	484.2499100919961	80.206	1.2622	80.054	79.377	80.639	-0.15168					76	29	4	0	0	0	0.35998	1	9898	9898		102.77	17.414	1	1881600			48282	12285	33523	33575	53646	53646	169				-0.00012977211497400276
LSQCFLSL	8	Carbamidomethyl (C)	_LSQC(Carbamidomethyl (C))FLSL_	LSQC(1)FLSL		LSQC(120)FLSL		0	1	0		ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.24932861328125	2	484.249503	966.484453	-0.75021	-0.00036329	1.0219	0.00049486	0.27171	0.00013158	484.24974646650077	79.87	1.4562	79.891	79.316	80.773	0.021439					78	34	3	0	0	0	0.2917	3	9834	9811;9834;9845		115.46	8.3033	1	1769800			48283	12285	33523	33575	53647;53648;53649	53648	169				-0.00012977211497400276
LSQCFLSL	8	Carbamidomethyl (C)	_LSQC(Carbamidomethyl (C))FLSL_					0	1	0		ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.249503	966.484453	0.66905	0.00032399	-1.5859	-0.00076797	-0.91684	-0.00044398	484.2481111049363	79.889	0.37549	79.643	79.405	79.78	-0.2465	-0.24177	-0.0026076	NaN	115.46	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28882			48284	12285	33523	33575			169				-0.00012977211497400276
LSQCFLSL	8	Carbamidomethyl (C)	_LSQC(Carbamidomethyl (C))FLSL_					0	1	0		ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	ENST00000326764.9_2_19:54972396-54972663:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.249503	966.484453	0.22537	0.00010913	-1.0989	-0.00053215	-0.87355	-0.00042302	484.2481812840457	80.156	0.21291	79.95	79.757	79.969	-0.20633	0.065444	-0.002136	NaN	115.46	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55625			48285	12285	33523	33575			169				-0.00012977211497400276
LSQDLQTQI	9	Unmodified	_LSQDLQTQI_					0	0	0		ENSG00000178358|ENST00000317834|OR2D3	ENSG00000178358|ENST00000317834|OR2D3	ENSG00000178358|ENST00000317834|OR2D3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2976684570312	2	523.279846	1044.54514	-0.057435	-3.0054E-05	0.88487	0.00046304	0.82744	0.00043298	523.2807387418972	52.282	0.62668	52.098	51.889	52.516	-0.18404					26	15	3	0	0	0	0.022913	1	5382	5382		98.582	0	1	333410			48286	8807	33524	33576	53650	53650					0.02464831372435583
LSQDSPRSL	9	Unmodified	_LSQDSPRSL_					0	0	0		TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant;ENSG00000104055|ENST00000220420|TGM5;nc|ENSG00000104055|O43548-2|TGM5	TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.763916015625	2	501.764363	1001.51417	-0.4024	-0.00020191	0.0060888	3.0551E-06	-0.39631	-0.00019885	501.7642778391244	31.727	1.0969	31.727	31.089	32.186	0					47	26	3	0	0	0	0.17822	1	2149	2149		93.195	2.8256	1	1831700			48287	2541	33525	33577	53651	53651					0.013476780581868297
LSQFHAAVD	9	Unmodified	_LSQFHAAVD_					0	0	0		DNAJC3-FOXN3|1|fusion;DNAJC3-FOXN3|2|fusion;ENSG00000102580|ENST00000602402|DNAJC3	DNAJC3-FOXN3|1|fusion;ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2582702636719	2	494.248349	986.482145	-0.069876	-3.4536E-05	0.2144	0.00010597	0.14453	7.1433E-05	494.2483686521577	41.985	0.89297	42.011	41.601	42.493	0.026012					52	25	5	0	0	0	0.024319	1	3716	3716		47.657	8.4045	1	676700			48288	658;2417	33526	33578	53652	53652					-0.01163689624968356
LSQFHAAVD	9	Unmodified	_LSQFHAAVD_					0	0	0		DNAJC3-FOXN3|1|fusion;DNAJC3-FOXN3|2|fusion;ENSG00000102580|ENST00000602402|DNAJC3	DNAJC3-FOXN3|1|fusion;ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.248349	986.482145	-0.4207	-0.00020793	0.41795	0.00020657	-0.0027522	-1.3603E-06	494.24842044686477	41.983	0.92366	41.86	41.603	42.527	-0.12299	-0.062325	0.00022052	NaN	47.657	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478150			48289	658;2417	33526	33578							-0.01163689624968356
LSQFHAAVD	9	Unmodified	_LSQFHAAVD_					0	0	0		DNAJC3-FOXN3|1|fusion;DNAJC3-FOXN3|2|fusion;ENSG00000102580|ENST00000602402|DNAJC3	DNAJC3-FOXN3|1|fusion;ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.248349	986.482145	-0.38425	-0.00018991	0.4287	0.00021188	0.044448	2.1969E-05	494.2483853033561	42.22	0.87148	41.988	41.695	42.567	-0.23186	0.066104	0.00023114	NaN	47.657	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487490			48290	658;2417	33526	33578							-0.01163689624968356
LSQFHAAVD	9	Unmodified	_LSQFHAAVD_					0	0	0		DNAJC3-FOXN3|1|fusion;DNAJC3-FOXN3|2|fusion;ENSG00000102580|ENST00000602402|DNAJC3	DNAJC3-FOXN3|1|fusion;ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.248349	986.482145	-0.22015	-0.00010881	0.13502	6.6733E-05	-0.085134	-4.2077E-05	494.24821256937764	42.236	0.86612	42.005	41.651	42.517	-0.23029	0.083078	-5.9157E-05	NaN	47.657	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459280			48291	658;2417	33526	33578							-0.01163689624968356
LSQFYLLI	8	Unmodified	_LSQFYLLI_					0	0	0			REV__ENST00000307533.10_1_4:6676994-6677156:+|nuORF	REV__ENST00000307533.10_1_4:6676994-6677156:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7901306152344	2	498.791861	995.569169	0.74974	0.00037396	-4.4699	-0.0022296	-3.7202	-0.0018556	498.78951729568115	70.34	1.8245	70.047	69.673	71.498	-0.29291					113	49	3	0	0	0	0.59392	1	8494	8494		76.847	0	1	8205600	+		48292	30138	33527	33579	53653	53653					0.07120716596762122
LSQGAPAVSP	10	Unmodified	_LSQGAPAVSP_					0	0	0			REV__ENSG00000166823|ENST00000300057|MESP1	REV__ENSG00000166823|ENST00000300057|MESP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.75128173828125	2	463.750724	925.486896	0.084884	3.9365E-05	-0.12603	-5.8446E-05	-0.041144	-1.908E-05	463.75069992220415	50.037	1.1292	49.886	49.558	50.687	-0.1512					84	32	4	0	0	0	0.69662	1	5199	5199		67.494	1.5962	1	10637000	+		48293	26062	33528	33580	53654	53654					0.021171945178025453
LSQGYPYLN	9	Unmodified	_LSQGYPYLN_					0	0	0		ENST00000257177.8_1_1:52889499-52889643:-|nuORF	ENST00000257177.8_1_1:52889499-52889643:-|nuORF	ENST00000257177.8_1_1:52889499-52889643:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.318603515625	2	527.763832	1053.51311	-0.53318	-0.00028139	-2.9412	-0.0015523	-3.4744	-0.0018337	528.2643563079257	39.425	0.44233	39.425	39.254	39.696	0					15	12	2	0	0	0	0.024477	1	3358	3358		35.618	5.3006	1	205840			48294	11402	33529	33581	53655	53655					-0.011505363107289668
LSQIKKKVADI	11	Unmodified	_LSQIKKKVADI_					0	0	0			REV__nc|ENSG00000198467|P07951-3|TPM2	REV__nc|ENSG00000198467|P07951-3|TPM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.9058532714844	3	414.930851	1241.77072	-0.042273	-1.754E-05	-0.65969	-0.00027372	-0.70196	-0.00029126	414.9316990087105	21.358	0.39308	21.268	20.961	21.354	-0.090094					10	7	2	0	0	0	0.024727	1	620	620		17.833	9.0338	1	11462	+	+	48295	37065	33530	33582	53656	53656					0.15950780562457112
LSQKKQSPK	9	Unmodified	_LSQKKQSPK_					0	0	0			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7646484375	2	522.314023	1042.61349	-1.2362	-0.00064568	0.95318	0.00049786	-0.28301	-0.00014782	522.3144023212385	29.909	0.49746	29.987	29.802	30.3	0.078344					22	11	3	0	0	0	0.023454	1	1835	1835		52.937	5.2794	1	246960	+		48296	22754	33531	33583	53657	53657					0.0938912074293512
LSQKPLPVM	9	Unmodified	_LSQKPLPVM_					0	0	0			REV__nc|ENSG00000278023|Q8NG50-12|RDM1	REV__nc|ENSG00000278023|Q8NG50-12|RDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.30316162109375	2	506.79662	1011.57869	0.079213	4.0145E-05	-2.7214	-0.0013792	-2.6422	-0.001339	506.79342409498673	47.498	1.0589	47.345	46.736	47.795	-0.153					36	29	2	0	0	0	0.024209	1	4666	4666		47.657	14.845	1	119620	+		48297	29211	33532	33584	53658	53658					0.07336161610624004
LSQKPRKSN	9	Unmodified	_LSQKPRKSN_					0	0	0		ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7935791015625	2	529.309272	1056.60399	-1.3488	-0.00071395	2.8936	0.0015316	1.5447	0.00081764	529.31103190255	37.58	0.61632	37.361	36.999	37.615	-0.2195					21	15	2	0	0	0	0.024374	1	2977	2977		40.778	1.5253	1	228420			48298	16421	33533	33585	53659	53659					0.07795352457424087
LSQKPRKSN	9	Unmodified	_LSQKPRKSN_					0	0	0		ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.309272	1056.60399	-0.2425	-0.00012836	2.2738	0.0012035	2.0313	0.0010752	529.3102828676562	37.613	0.53576	37.42	37.152	37.687	-0.193	0.0089858	-0.00064191	NaN	40.778	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164700			48299	16421	33533	33585							0.07795352457424087
LSQKPRKSN	9	Unmodified	_LSQKPRKSN_					0	0	0		ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.309272	1056.60399	-1.0511	-0.00055634	3.2923	0.0017426	2.2412	0.0011863	529.3106829553959	37.671	0.42371	37.452	37.183	37.607	-0.21848	0.041318	0.00043633	NaN	40.778	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199530			48300	16421	33533	33585							0.07795352457424087
LSQLEAILL	9	Unmodified	_LSQLEAILL_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3076171875	2	500.307875	998.601197	0.083383	4.1717E-05	-0.15498	-7.7539E-05	-0.071599	-3.5822E-05	500.3076110616932	73.307	1.3886	73.036	72.149	73.538	-0.27126					96	34	4	0	0	0	0.14024	1	8902	8902		101.6	0	1	1308300			48301	8092	33534	33586	53660	53660					0.10184084279887884
LSQLKHPNIVT	11	Unmodified	_LSQLKHPNIVT_					0	0	0		nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-2|NEK4	nc|ENSG00000114904|P51957-2|NEK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.3740844726562	2	625.366787	1248.71902	-1.8615	-0.0011641	2.0796	0.0013005	0.21814	0.00013642	625.3679103070833	106.07	0.34895	105.94	105.81	106.16	-0.13279					23	13	2	0	0	0	0.99129	1	13218	13218		38.754	12.061	1	242560			48302	3394	33535	33587	53661	53661					0.10461036868537121
LSQLMDPIN	9	Unmodified	_LSQLMDPIN_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.281005859375	2	515.765517	1029.51648	-0.91795	-0.00047345	2.5333	0.0013066	1.6154	0.00083315	516.2677565735083	83.393	0.21087	83.393	83.309	83.52	0					6	4	2	0	0	0	0.023239	1	10438	10438		74.255	13.283	1	72523	+		48303	21813	33536	33588	53662	53662					0.0029039047165042575
LSQLMFDL	8	Unmodified	_LSQLMFDL_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2923278808594	2	483.751879	965.489204	0.057655	2.7891E-05	-0.54496	-0.00026362	-0.4873	-0.00023573	483.7519071028955	57.672	0.30343	57.481	57.295	57.599	-0.19017					11	7	2	0	0	0	0.027866	1	6323	6323		37.159	0	1	71472	+		48304	37143	33537	33589	53663	53663					0.005079069312387219
LSQLNDELN	9	Unmodified	_LSQLNDELN_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.279541015625	2	523.261653	1044.50875	-1.4852	-0.00077715	-1.7467	-0.00091397	-3.2319	-0.0016911	523.2607329606125	38.493	0.59859	38.493	38.199	38.797	0					27	15	2	0	0	0	0.024457	1	3272	3272		21.96	0	1	591120	+		48305	23842	33538	33590	53664	53664					-0.011720455242766548
LSQLPYQS	8	Unmodified	_LSQLPYQS_					0	0	0			REV__ENSG00000143476|ENST00000366991|DTL	REV__ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2447814941406	2	468.245275	934.475997	0.84537	0.00039584	-1.803	-0.00084423	-0.9576	-0.00044839	468.2442937403857	103.2	1.893	103.19	102.28	104.18	-0.0046005					118	45	4	0	0	0	1.0574	1	13253	13253		24.203	1.1603	1	6166300	+		48306	24253	33539	33591	53665	53665					0.006137921435197313
LSQLSFHRVD	10	Unmodified	_LSQLSFHRVD_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.89947509765625	3	401.21565	1200.62512	2.8529	0.0011446	1.17	0.00046942	4.0229	0.0016141	401.2160580746326	54.535	1.3141	54.633	54.393	55.707	0.098015					61	36	3	0	0	0	0.03519	1	5922	5922		31.634	1.0654	1	829890			48307	2669	33540	33592	53666	53666					0.032833177662723756
LSQNPNDKL	9	Unmodified	_LSQNPNDKL_					0	0	0			REV__ENSG00000164211|ENST00000296632|STARD4	REV__ENSG00000164211|ENST00000296632|STARD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.771240234375	2	514.772188	1027.52982	-0.87471	-0.00045028	0.42808	0.00022037	-0.44662	-0.00022991	514.7724367544774	43.246	0.83509	43.246	42.895	43.731	0					62	22	4	0	0	0	0.39228	1	4039	4039		66.429	0.6261	1	7507600	+		48308	25717	33541	33593	53667	53667					0.01715964575214457
LSQNTTLLL	9	Unmodified	_LSQNTTLLL_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7945861816406	2	501.795132	1001.57571	-0.086906	-4.3609E-05	-0.46263	-0.00023215	-0.54954	-0.00027576	501.79482640565107	50.297	0.75023	50.146	49.708	50.458	-0.1512					68	21	4	0	0	0	0.14024	1	5231	5231		101.6	0	1	9437100	+		48309	28791	33542	33594	53668	53668					0.07498609757476515
LSQQYAASTL	10	Unmodified	_LSQQYAASTL_					0	0	0			REV__ENST00000571697.5_1_17:7217203-7217998:-|nuORF	REV__ENST00000571697.5_1_17:7217203-7217998:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2824096679688	2	541.279846	1080.54514	-1.4205	-0.00076891	4.3999	0.0023816	2.9793	0.0016127	541.2824422326003	80.351	0.74845	80.372	80.063	80.811	0.021439					47	17	4	0	0	0	0.80817	1	9919	9919		60.118	1.8883	1	1628200	+		48310	35399	33543	33595	53669	53669					0.008088313724329055
LSQRKKLL	8	Unmodified	_LSQRKKLL_					0	0	0			REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3288879394531	2	493.329476	984.6444	0.24799	0.00012234	-0.41556	-0.00020501	-0.16757	-8.2666E-05	493.3291385920245	18.441	0.69345	18.237	18.014	18.708	-0.20371					33	13	4	0	0	0	0.71833	1	297	297		65.803	0	1	663730	+		48311	25531	33544	33596	53670	53670					0.15146318847837392
LSQRRCLEL	9	Unmodified	_LSQRRCLEL_					0	0	0		ENST00000442081.6_2_6:12015847-12015898:+|nuORF	ENST00000442081.6_2_6:12015847-12015898:+|nuORF	ENST00000442081.6_2_6:12015847-12015898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.264892578125	2	559.310958	1116.60736	0.54126	0.00030273	2.5487	0.0014255	3.09	0.0017283	559.3120697845229	79.654	0.87907	79.407	79.07	79.949	-0.2465					49	20	3	0	0	0	0.023837	1	9578	9578		74.255	0	1	1117300			48312	14375	33545	33597	53671	53671					0.053722792397593366
LSQVKYIF	8	Unmodified	_LSQVKYIF_					0	0	0		ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7664489746094	2	499.289485	996.564418	-0.46197	-0.00023066	-3.7361	-0.0018654	-4.1981	-0.0020961	499.28740815045	42.009	0.60923	41.777	41.546	42.155	-0.23186					22	16	2	0	0	0	0.027866	1	3705	3705		30.504	0	1	82370			48313	16887	33546	33598	53672	53672					0.06599832453980525
LSQVLSLAR	9	Unmodified	_LSQVLSLAR_					0	0	0			REV__ENSG00000255181|ENST00000542437|CCDC166	REV__ENSG00000255181|ENST00000542437|CCDC166	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7793273925781	2	493.803291	985.59203	-0.29602	-0.00014618	-1.9689	-0.00097223	-2.2649	-0.0011184	493.8020470970443	24.178	0.40009	23.963	23.689	24.089	-0.2151					13	8	2	0	0	0	0.024313	1	1027	1027		28.081	0	1	140650	+		48314	29063	33547	33599	53673	53673					0.09865735714231505
LSQVLVRR	8	Unmodified	_LSQVLVRR_					0	0	0			REV__ENST00000558942.5_1_15:89195091-89198759:+|nuORF	REV__ENST00000558942.5_1_15:89195091-89198759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78826904296875	2	485.811451	969.608348	0.15118	7.3445E-05	-1.3591	-0.00066025	-1.2079	-0.0005868	485.8105248505748	47.047	0.38886	46.894	46.736	47.125	-0.15301					19	9	3	0	0	0	0.027866	1	4694	4694		94.006	6.2521	1	361650	+		48315	35104	33548	33600	53674	53674					0.12232861670986495
LSQVYRCGF	9	Unmodified	_LSQVYRCGF_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7817993164062	2	536.765852	1071.51715	-0.43298	-0.00023241	-2.3164	-0.0012434	-2.7494	-0.0014758	536.7637867077191	61.117	0.27776	60.911	60.772	61.05	-0.20599					9	6	2	0	0	0	0.024374	1	6830	6830		49.442	3.4896	1	50058			48316	1223	33549	33601	53675	53675					-0.015747700886549865
LSRAKRISI	9	Unmodified	_LSRAKRISI_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2797241210938	2	522.337833	1042.66111	-0.48155	-0.00025153	-1.2953	-0.00067658	-1.7768	-0.00092811	522.3374429765294	59.688	0.84757	59.774	59.171	60.018	0.085682					28	22	2	0	0	0	0.024445	1	6780	6780		38.754	4.832	1	232110	+		48317	26005	33550	33602	53676	53676					0.14148819733804885
LSRAKRLV	8	Unmodified	_LSRAKRLV_					0	0	0			REV__ENSG00000167291|ENST00000310924|TBC1D16	REV__ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7900390625	2	471.813993	941.613434	0.080781	3.8113E-05	-1.0686	-0.00050418	-0.98782	-0.00046607	471.8115657439861	47.954	0.2536	47.954	47.717	47.971	0					11	7	2	0	0	0	0.027866	1	4826	4826		87.754	13.78	1	182550	+		48318	26126	33551	33603	53677	53677					0.14029165533611376
LSRALSRAR	9	Unmodified	_LSRALSRAR_					0	0	0			REV__ENST00000568500.1_1_16:30709907-30710114:-|nuORF	REV__ENST00000568500.1_1_16:30709907-30710114:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8037109375	2	515.317432	1028.62031	0.074179	3.8226E-05	-4.2616	-0.0021961	-4.1874	-0.0021578	515.3140027008493	58.602	0.6931	58.415	58.173	58.866	-0.18705					29	18	3	0	0	0	0.024447	1	6583	6583		32.812	10.853	1	1200800	+		48319	35343	33552	33604	53678	53678					0.10714478414161022
LSRAVSKPQ	9	Unmodified	_LSRAVSKPQ_					0	0	0		ENST00000549780.5_2_18:3448551-3456376:+|nuORF	ENST00000549780.5_2_18:3448551-3456376:+|nuORF	ENST00000549780.5_2_18:3448551-3456376:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3294982910156	2	493.293091	984.571629	2.1393	0.0010553	1.228	0.00060576	3.3673	0.001661	493.29270485098965	24.436	0.52039	24.255	23.983	24.504	-0.18089					17	11	2	0	0	0	0.024319	1	1036	1036		66.429	3.123	1	81762			48320	16570	33553	33605	53679	53679					0.07872565054424285
LSRCKAIVPQ	10	Unmodified	_LSRCKAIVPQ_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.8037719726562	2	557.823701	1113.63285	-0.43866	-0.00024469	4.4426	0.0024782	4.004	0.0022335	557.8265851437461	49.095	0.29161	48.815	48.682	48.973	-0.27977					11	7	2	0	0	0	0.03519	1	4903	4903		42.396	2.338	1	174270			48321	8341	33554	33606	53680	53680					0.08057753762182074
LSRCLEPL	8	Carbamidomethyl (C)	_LSRC(Carbamidomethyl (C))LEPL_	LSRC(1)LEPL		LSRC(59)LEPL		0	1	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7700500488281	2	494.268227	986.521901	0.90129	0.00044548	1.5102	0.00074643	2.4115	0.0011919	494.27099031842727	70.69	0.67662	70.397	70.241	70.918	-0.29291					37	16	3	0	0	0	0.80469	1	8511	8511		58.782	10.866	1	852280			48322	3726	33555	33607	53681	53681	45				0.028101140541025416
LSRCLHLVE	9	Unmodified	_LSRCLHLVE_					0	0	0			REV__ENSG00000124181|ENST00000685551|PLCG1	REV__ENSG00000124181|ENST00000685551|PLCG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2471313476562	2	535.294776	1068.575	-0.32447	-0.00017369	-1.2486	-0.00066835	-1.573	-0.00084204	535.2935248125098	73.896	0.43578	73.619	73.288	73.724	-0.2769					23	10	3	0	0	0	0.02435	1	8661	8661		34.173	0	1	431600	+		48323	22742	33556	33608	53682	53682					0.043454918367842765
LSRCQISPP	9	Unmodified	_LSRCQISPP_					0	0	0		ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	ENST00000477917.5_1_2:220146297-220148118:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7463073730469	2	500.765852	999.51715	-0.91447	-0.00045793	-4.3491	-0.0021779	-5.2636	-0.0026358	501.2643495456265	41.447	0.19374	41.217	41.08	41.274	-0.23029					6	4	2	0	0	0	0.024477	1	3648	3648		27.882	4.8398	1	29457			48324	15122	33557	33609	53683	53683					0.017372299113503686
LSRDEEAGVV	10	Unmodified	_LSRDEEAGVV_					0	0	0			REV__ENST00000565276.5_2_16:904514-904637:-|nuORF	REV__ENST00000565276.5_2_16:904514-904637:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2948608398438	2	537.774928	1073.5353	-1.3695	-0.0007365	3.7799	0.0020327	2.4103	0.0012962	537.7783376560533	56.071	0.20972	56.169	55.999	56.209	0.097897					9	5	2	0	0	0	0.03519	1	6140	6140		40.778	0	1	51643	+		48325	35273	33558	33610	53684	53684					0.001476433670404731
LSRDLESAM	9	Unmodified	_LSRDLESAM_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000131018|Q8NF91-11|SYNE1;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-9|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.7723693847656	2	511.252774	1020.491	-0.4683	-0.00023942	-2.7806	-0.0014216	-3.2489	-0.001661	511.2511963965943	31.967	0.50151	31.809	31.489	31.991	-0.15772					15	11	2	0	0	0	0.024535	1	2119	2119		18.324	4.5491	1	126100			48326	4485	33559	33611	53685	53685					-0.018430840508017354
LSRDNDSL	8	Unmodified	_LSRDNDSL_					0	0	0			REV__nc|ENSG00000166484|Q13164-2|MAPK7	REV__nc|ENSG00000166484|Q13164-2|MAPK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2278747558594	2	460.227613	918.440674	-0.59309	-0.00027296	0.78544	0.00036148	0.19235	8.8527E-05	460.22780004288194	25.424	0.90792	25.424	25.135	26.043	0					57	21	4	0	0	0	0.42327	1	1213	1213		94.006	8.6469	1	1883300	+		48327	26026	33560	33612	53686	53686					-0.021808703842907562
LSRDNPSPQ	9	Unmodified	_LSRDNPSPQ_					0	0	0			REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8306579589844	2	507.254163	1012.49377	-0.2153	-0.00010921	-1.6089	-0.00081611	-1.8242	-0.00092532	507.2521522566662	46.71	0.53801	46.44	46.192	46.73	-0.26939					33	14	4	0	0	0	0.024288	1	4547	4547		62.107	0	1	445750	+		48328	36959	33561	33613	53687	53687					-0.01197492601625072
LSRDNPSPQ	9	Unmodified	_LSRDNPSPQ_					0	0	0			REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.254163	1012.49377	-0.16334	-8.2856E-05	-4.2563	-0.002159	-4.4196	-0.0022419	507.7538992358707	46.326	0.53166	46.326	46.056	46.587	0	-0.015698	-0.00085248	NaN	62.107	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207930	+		48329	36959	33561	33613							-0.01197492601625072
LSRDNPSPQ	9	Unmodified	_LSRDNPSPQ_					0	0	0			REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.254163	1012.49377	-1.1608	-0.00058882	-3.1876	-0.0016169	-4.3484	-0.0022057	507.2521413158343	46.427	0.56126	46.275	46.026	46.587	-0.15156	-0.066481	0.00023169	NaN	62.107	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233400	+		48330	36959	33561	33613							-0.01197492601625072
LSRDNPSPQ	9	Unmodified	_LSRDNPSPQ_					0	0	0			REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.254163	1012.49377	-0.14296	-7.2519E-05	-3.8549	-0.0019554	-3.9979	-0.002028	507.2517668615298	46.371	0.48179	46.423	46.167	46.649	0.051399	0.081273	-0.00044533	NaN	62.107	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230130	+		48331	36959	33561	33613							-0.01197492601625072
LSRDNPSPQ	9	Unmodified	_LSRDNPSPQ_					0	0	0			REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.254163	1012.49377	0.07371	3.739E-05	-3.3282	-0.0016882	-3.2545	-0.0016509	507.2523242486103	46.39	0.36009	46.294	46.078	46.438	-0.096649	-0.047999	8.9066E-05	NaN	62.107	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415780	+		48332	36959	33561	33613							-0.01197492601625072
LSRDNPSPQ	9	Unmodified	_LSRDNPSPQ_					0	0	0			REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	REV__nc|ENSG00000175265|A7E2F4|GOLGA8A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.254163	1012.49377	-0.76029	-0.00038566	-3.3337	-0.001691	-4.094	-0.0020767	507.2522264422208	46.492	0.48759	46.292	46.083	46.57	-0.20061	-0.049705	8.3477E-05	NaN	62.107	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608080	+		48333	36959	33561	33613							-0.01197492601625072
LSRDPPLLP	9	Unmodified	_LSRDPPLLP_					0	0	0		ENST00000477184.5_1_7:102123509-102123833:-|nuORF	ENST00000477184.5_1_7:102123509-102123833:-|nuORF	ENST00000477184.5_1_7:102123509-102123833:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.2979736328125	2	504.297842	1006.58113	-0.28794	-0.00014521	-0.5046	-0.00025447	-0.79254	-0.00039968	504.29746516953116	61.591	1.3014	61.663	61.315	62.616	0.071125					92	34	5	0	0	0	0.55828	1	7086	7086		55.504	4.1688	1	13741000			48334	15108	33562	33614	53688	53688					0.0781033333993264
LSREELVDA	9	Unmodified	_LSREELVDA_					0	0	0		ENST00000460909.1_1_3:9885140-9885698:-|nuORF;ENST00000473522.1_1_3:9883665-9885335:-|nuORF;nc|ENSG00000156990|Q6P087-4|RPUSD3;nc|ENSG00000156990|Q6P087-3|RPUSD3;ENST00000472381.5_1_3:9882380-9885335:-|nuORF;nc|ENSG00000156990|Q6P087-6|RPUSD3;nc|ENSG00000156990|Q6P087-2|RPUSD3;ENSG00000156990|ENST00000383820|RPUSD3;nc|ENSG00000156990|Q6P087|RPUSD3	ENST00000460909.1_1_3:9885140-9885698:-|nuORF	ENST00000460909.1_1_3:9885140-9885698:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2967529296875	2	516.272021	1030.52949	0.010063	5.1954E-06	2.1841	0.0011276	2.1942	0.0011328	516.2732927642279	36.831	0.67244	36.638	36.255	36.927	-0.193					20	16	2	0	0	0	0.020546	1	2921	2921		64.207	0	1	143620			48335	6566	33563	33615	53689	53689					0.015445448553691676
LSREKIDL	8	Unmodified	_LSREKIDL_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2874755859375	2	487.287474	972.560395	-0.65151	-0.00031747	0.17095	8.3302E-05	-0.48056	-0.00023417	487.28750584322256	38.683	0.7411	38.462	38.187	38.928	-0.22148					49	19	4	0	0	0	0.53593	1	3197	3197		82.241	7.9855	1	5546400			48336	4439	33564	33616	53690	53690					0.0730174296027144
LSRELFESW	9	Unmodified	_LSRELFESW_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.7960205078125	2	583.795663	1165.57677	-0.30484	-0.00017797	-0.09799	-5.7206E-05	-0.40283	-0.00023517	583.7956841721585	68.455	0.9325	68.193	67.694	68.626	-0.26166					63	22	4	0	0	0	0.065	1	7907	7907		123.21	61.101	1	1561900			48337	137	33565	33617	53691	53691					0.0006082412637624657
LSRELFESW	9	Unmodified	_LSRELFESW_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.7958984375	2	583.795663	1165.57677	-0.091067	-5.3165E-05	-0.20847	-0.0001217	-0.29954	-0.00017487	583.7956191158229	68.414	1.2519	68.183	67.677	68.929	-0.23048					64	30	3	0	0	0	0.22379	1	7909	7909		85.862	10.819	1	1680400			48338	137	33565	33617	53692	53692					0.0006082412637624657
LSRELFESW	9	Unmodified	_LSRELFESW_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	583.795663	1165.57677	-0.36589	-0.0002136	0.36806	0.00021487	0.0021714	1.2677E-06	583.7959203447265	68.438	0.91871	68.195	67.747	68.666	-0.24277	0.0043934	0.00045317	NaN	123.21	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1883100			48339	137	33565	33617							0.0006082412637624657
LSRERALD	8	Unmodified	_LSRERALD_					0	0	0		ENSG00000259956|ENST00000563281|RBM15B	ENSG00000259956|ENST00000563281|RBM15B	ENSG00000259956|ENST00000563281|RBM15B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28961181640625	2	480.267073	958.519593	-0.32657	-0.00015684	3.929	0.001887	3.6024	0.0017301	480.26863442989696	48.462	0.4273	48.529	48.301	48.729	0.066795					21	11	2	0	0	0	0.027866	1	4908	4908		11.511	0	1	526100			48340	10938	33566	33618	53693	53693					0.03867401640661683
LSRFQLLR	8	Unmodified	_LSRFQLLR_					0	0	0		MTMR11|p.V115F|1|0.38|ENSG00000014914|chr1:149935111-149935111|C/A|missense_variant	MTMR11|p.V115F|1|0.38|ENSG00000014914|chr1:149935111-149935111|C/A|missense_variant	MTMR11|p.V115F|1|0.38|ENSG00000014914|chr1:149935111-149935111|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	516.819276	1031.624	-0.62032	-0.00032059	-0.51933	-0.0002684	-1.1396	-0.00058899	516.8189951113825	44.809	0.39389	44.556	44.354	44.748	-0.25252					13	9	2	0	0	0	0.027866	1	4176	4176		17.365	0	1	160390			48341	17998	33567	33619	53694	53694					0.10945148188034182
LSRGAISI	8	Unmodified	_LSRGAISI_					0	0	0			REV__CON__P41361	REV__CON__P41361	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	408.7500915527344	2	408.750527	815.486502	-0.95102	-0.00038873	0.82346	0.00033659	-0.12756	-5.2141E-05	408.7507245532579	37.919	0.72134	37.701	37.463	38.184	-0.21849					46	20	3	0	0	0	0.32162	1	3079	3079		108.09	0	1	1974700	+	+	48342	19562	33568	33620	53695	53695					0.07137819588615457
LSRGAISI	8	Unmodified	_LSRGAISI_					0	0	0			REV__CON__P41361	REV__CON__P41361	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	408.750527	815.486502	-0.037784	-1.5444E-05	-0.0070748	-2.8918E-06	-0.044859	-1.8336E-05	408.7503500443301	37.865	0.61893	37.686	37.483	38.102	-0.17929	-0.012894	-0.00041093	NaN	108.09	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817890	+	+	48343	19562	33568	33620							0.07137819588615457
LSRGAISI	8	Unmodified	_LSRGAISI_					0	0	0			REV__CON__P41361	REV__CON__P41361	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	408.750527	815.486502	-0.49362	-0.00020177	0.46695	0.00019087	-0.026671	-1.0902E-05	408.7505318240542	37.931	0.73067	37.709	37.388	38.119	-0.22148	0.010602	-2.3412E-05	NaN	108.09	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006000	+	+	48344	19562	33568	33620							0.07137819588615457
LSRGAISIV	9	Unmodified	_LSRGAISIV_					0	0	0			REV__CON__P41361	REV__CON__P41361	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.28497314453125	2	458.284734	914.554916	1.8363	0.00084157	-1.6283	-0.00074622	0.20805	9.5344E-05	458.2838674112301	59.07	1.0178	58.883	58.611	59.629	-0.18705					69	27	4	0	0	0	0.12602	2	6692	6692;6702		104.75	5.3716	1	5668800	+	+	48345	19562	33569	33621	53696;53697	53696					0.09422064168472843
LSRGLIVPA	9	Unmodified	_LSRGLIVPA_					0	0	0		ENST00000431261.6_1_15:65899763-65903535:-|nuORF;ENST00000567923.1_1_15:65899662-65903535:-|nuORF	ENST00000431261.6_1_15:65899763-65903535:-|nuORF	ENST00000431261.6_1_15:65899763-65903535:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.2951354980469	2	463.295102	924.575651	-0.14797	-6.8552E-05	-0.5371	-0.00024884	-0.68507	-0.00031739	463.29478320941917	48.514	1.2853	48.332	48.02	49.305	-0.18206					98	34	5	0	0	0	0.85329	1	4842	4842		35.618	1.4457	1	10417000			48346	14184	33570	33622	53698	53698					0.1103465454812067
LSRGLIVVDK	10	Unmodified	_LSRGLIVVDK_					0	0	0			REV__nc|ENSG00000198408|O60502-2|OGA	REV__nc|ENSG00000198408|O60502-2|OGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2982788085938	2	550.345323	1098.67609	-0.69246	-0.00038109	0.99805	0.00054927	0.30559	0.00016818	550.3454871264165	54.32	0.76811	54.184	53.928	54.696	-0.13617					55	21	4	0	0	0	0.03519	1	5814	5814		47.96	7.1814	1	1196700	+		48347	19186	33571	33623	53699	53699					0.13070266811109832
LSRGLWPQ	8	Unmodified	_LSRGLWPQ_					0	0	0		ENST00000598497.1_1_19:58598201-58598612:-|nuORF	ENST00000598497.1_1_19:58598201-58598612:-|nuORF	ENST00000598497.1_1_19:58598201-58598612:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28961181640625	2	478.769252	955.52395	-0.82583	-0.00039538	1.0861	0.00052001	0.26032	0.00012463	478.7695181147005	48.917	1.5251	48.991	47.978	49.503	0.074192					78	41	3	0	0	0	0.027866	1	4908	4908		34.173	12.213	1	1032700			48348	17472	33572	33624	53700	53700					0.044409108542254216
LSRGRRLT	8	Unmodified	_LSRGRRLT_					0	0	0			REV__nc|ENSG00000140451|Q9H611-4|PIF1	REV__nc|ENSG00000140451|Q9H611-4|PIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7818603515625	2	479.798875	957.583196	-0.92472	-0.00044368	2.9564	0.0014185	2.0317	0.00097479	479.8006212406644	21.882	0.19778	21.954	21.83	22.028	0.071487					5	3	2	0	0	0	0.027866	1	677	677		42.396	6.7778	1	6157.1	+		48349	24017	33573	33625	53701	53701					0.10270806868390991
LSRGRRLT	8	Unmodified	_LSRGRRLT_					0	0	0			REV__nc|ENSG00000140451|Q9H611-4|PIF1	REV__nc|ENSG00000140451|Q9H611-4|PIF1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	479.798875	957.583196	0.78444	0.00037637	1.5373	0.00073757	2.3217	0.0011139	479.7993807832015	22.109	0.79659	21.92	21.531	22.327	-0.18894	-0.058256	-0.0010586	NaN	34.173	33	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425940	+		48350	24017	33573	33625							0.10270806868390991
LSRGSARAL	9	Unmodified	_LSRGSARAL_					0	0	0		ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7774963378906	2	465.777608	929.540663	0.30012	0.00013979	-0.38376	-0.00017875	-0.083645	-3.896E-05	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.75397	1	9703	9703		42.396	0	1	1281300			48351	5615	33574	33626	53702	53702					0.07307411740168845
LSRGSARAL	9	Unmodified	_LSRGSARAL_					0	0	0		ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	ENSG00000143162|ENST00000370509|CREG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77777099609375	2	465.777608	929.540663	-0.52618	-0.00024508	0.34984	0.00016295	-0.17634	-8.2136E-05	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.75397	1	9770	9770		42.396	5.237	1	1029300			48352	5615	33574	33626	53703	53703					0.07307411740168845
LSRGTPAPTPP	11	Unmodified	_LSRGTPAPTPP_					0	0	0		ENST00000499203.6_1_5:139486914-139487028:-|nuORF	ENST00000499203.6_1_5:139486914-139487028:-|nuORF	ENST00000499203.6_1_5:139486914-139487028:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	547.3072509765625	2	547.303655	1092.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.108	1	62.85	62.35	63.35	-0.25824								0	0	0	0.96099	1	7105	7105		47.96	0.043923	1				48353	15636	33575	33627	53704	53704					0.050165303632638825
LSRIKSSKST	10	Unmodified	_LSRIKSSKST_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8311767578125	2	553.830037	1105.64552	-0.33257	-0.00018418	0.12895	7.1417E-05	-0.20361	-0.00011277	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.1162	1	10823	10823		19.104	0.84144	1	6921700	+		48354	36503;20881	33576	33628	53705	53705					0.09692488426071577
LSRIRRVD	8	Unmodified	_LSRIRRVD_					0	0	0			REV__NTSR2|p.R294C|1|0.4|ENSG00000169006|chr2:11661985-11661985|G/A|missense_variant	REV__NTSR2|p.R294C|1|0.4|ENSG00000169006|chr2:11661985-11661985|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3323669433594	2	507.811982	1013.60941	-0.77775	-0.00039495	-1.9471	-0.00098876	-2.7248	-0.0013837	508.3111241176304	80.347	0.21162	80.368	80.274	80.486	0.021446					6	4	2	0	0	0	0.027866	1	9923	9923		17.365	0	1	19062	+		48355	26308	33577	33629	53706	53706					0.10315076039887572
LSRKAAAKES	10	Unmodified	_LSRKAAAKES_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF;ENST00000489909.1_1_3:182746960-182755114:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8101196289062	2	530.809105	1059.60366	1.03	0.00054673	-0.35388	-0.00018784	0.67611	0.00035888	530.8089811467206	17.637	1.0901	17.483	17.159	18.249	-0.15403					54	21	5	0	0	0	1.1314	1	234	234		27.047	1.9213	1	2530100			48356	1626	33578	33630	53707	53707					0.07623932737533323
LSRKGVKTN	9	Unmodified	_LSRKGVKTN_					0	0	0		ENST00000344120.4_1_5:141690612-141690795:-|nuORF	ENST00000344120.4_1_5:141690612-141690795:-|nuORF	ENST00000344120.4_1_5:141690612-141690795:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8176574707031	2	501.806365	1001.59818	-0.37849	-0.00018993	0.62666	0.00031446	0.24817	0.00012454	501.807066976456	93.686	0.82388	93.692	93.307	94.131	0.0059814					27	19	2	0	0	0	0.024374	1	11848	11848		49.442	17.912	1	90521			48357	12545	33579	33631	53708	53708					0.09744253945757464
LSRKKLPNH	9	Unmodified	_LSRKKLPNH_					0	0	0		ENST00000478383.5_1_3:160821891-160822176:-|nuORF;ENST00000460353.1_1_3:160821276-160822176:-|nuORF;ENST00000320474.8_1_3:160821276-160822176:-|nuORF	ENST00000478383.5_1_3:160821891-160822176:-|nuORF	ENST00000478383.5_1_3:160821891-160822176:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2763061523438	2	546.835457	1091.65636	-1.2508	-0.00068398	0.78164	0.00042743	-0.46915	-0.00025655	546.8357730345696	31.238	1.1101	31.238	30.879	31.989	0					68	26	4	0	0	0	0.02435	1	2037	2037		60.972	18.576	1	579680			48358	12194	33580	33632	53709	53709					0.11419935591038666
LSRKRGDEV	9	Unmodified	_LSRKRGDEV_					0	0	0			REV__nc|ENSG00000126012|P41229-2|KDM5C	REV__nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2849731445312	2	530.298904	1058.58326	0.6057	0.0003212	1.7685	0.00093786	2.3742	0.0012591	530.2995717944781	71.19	0.57111	70.902	70.503	71.074	-0.28858					20	13	2	0	0	0	0.024477	1	8524	8524		14.865	0	1	215840	+		48359	22876	33581	33633	53710	53710					0.05630762077748841
LSRKVLLD	8	Unmodified	_LSRKVLLD_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.3001708984375	2	472.300384	942.586216	1.1537	0.0005449	-1.6097	-0.00076026	-0.45599	-0.00021536	472.29961352116766	20.212	1.1715	20.016	19.706	20.877	-0.19577					57	23	4	0	0	0	0.6536	1	526	526		71.296	0	1	3234100			48360	4130	33582	33634	53711	53711					0.112626372025602
LSRLEYCD	8	Unmodified	_LSRLEYCD_					0	0	0		ENST00000461701.5_1_11:64680365-64680938:-|nuORF	ENST00000461701.5_1_11:64680365-64680938:-|nuORF	ENST00000461701.5_1_11:64680365-64680938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7918701171875	2	499.734217	997.453881	-1.0062	-0.00050282	0.98503	0.00049225	-0.021141	-1.0565E-05	499.7345155065826	29.36	1.7121	29.115	28.322	30.034	-0.24524					71	39	3	0	0	0	0.027866	1	1826	1826		51.335	7.2187	1	179470			48361	14688	33583	33635	53712	53712					-0.04494755596556388
LSRLHQLW	8	Unmodified	_LSRLHQLW_					0	0	0			REV__OSGIN2|p.F143Yfs*31|1|0.06|ENSG00000164823|chr8:89921108-89921109|-/CTACTGGCTGCAGCATCTGAGAT|frameshift_variant	REV__OSGIN2|p.F143Yfs*31|1|0.06|ENSG00000164823|chr8:89921108-89921109|-/CTACTGGCTGCAGCATCTGAGAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2887573242188	2	526.803626	1051.5927	-0.91145	-0.00048016	4.009	0.002112	3.0976	0.0016318	527.3075561788744	103.54	0.68952	103.54	103.43	104.12	0					21	16	2	0	0	0	0.027866	1	13355	13355		18.324	0	1	50134	+		48362	37340	33584	33636	53713	53713					0.06896575153928097
LSRLKMNN	8	Unmodified	_LSRLKMNN_					0	0	0		ENST00000456746.5_1_2:178203393-178213069:-|nuORF	ENST00000456746.5_1_2:178203393-178213069:-|nuORF	ENST00000456746.5_1_2:178203393-178213069:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.27984619140625	2	488.273844	974.533135	-0.46314	-0.00022614	0.29268	0.00014291	-0.17046	-8.3232E-05	488.2738005130273	23.579	0.71986	23.579	23.36	24.08	0					36	16	3	0	0	0	0.027866	1	920	920		16.473	4.2663	1	341960			48363	14600	33585	33637	53714	53714					0.044849361482420136
LSRLLKLNH	9	Unmodified	_LSRLLKLNH_					0	0	0		ENST00000479449.1_1_3:49084597-49094464:-|nuORF	ENST00000479449.1_1_3:49084597-49094464:-|nuORF	ENST00000479449.1_1_3:49084597-49094464:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.326416015625	2	547.345658	1092.67676	-0.66853	-0.00036592	-0.30247	-0.00016556	-0.971	-0.00053147	547.3466556001275	41.448	0.56216	41.471	41.219	41.781	0.023006					27	15	3	0	0	0	0.021513	1	3670	3670		93.195	0	1	263860			48364	15172	33586	33638	53715	53715					0.13413106250823148
LSRLPHLY	8	Unmodified	_LSRLPHLY_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.7908935546875	2	499.792727	997.5709	-0.65376	-0.00032674	-3.8968	-0.0019476	-4.5506	-0.0022743	499.790769152799	29.705	1.0216	29.459	29.099	30.121	-0.24524					33	23	2	0	0	0	1.0362	1	1846	1846		31.579	1.0753	1	4505500	+		48365	27480	33587	33639	53716	53716					0.07201770405356456
LSRLSTLP	8	Unmodified	_LSRLSTLP_					0	0	0			REV__ENST00000357077.8_2_4:114276072-114276237:+|nuORF	REV__ENST00000357077.8_2_4:114276072-114276237:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.77142333984375	2	443.77146	885.528367	-0.15583	-6.9153E-05	0.3741	0.00016602	0.21827	9.6864E-05	443.771504984229	32.434	0.79224	32.197	31.954	32.746	-0.23666					52	18	4	0	0	0	0.46709	3	2236	2224;2236;2252		88.643	7.9919	1	2690800	+		48366	30817	33588	33640	53717;53718;53719	53718					0.08102375277132978
LSRLSTLP	8	Unmodified	_LSRLSTLP_					0	0	0			REV__ENST00000357077.8_2_4:114276072-114276237:+|nuORF	REV__ENST00000357077.8_2_4:114276072-114276237:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.77130126953125	2	443.77146	885.528367	-0.032076	-1.4235E-05	0.063912	2.8362E-05	0.031836	1.4128E-05	443.77136080503095	32.423	0.77264	32.266	32.035	32.807	-0.15772					42	18	3	0	0	0	0.37125	1	2224	2224		101.21	9.0209	1	2717100	+		48367	30817	33588	33640	53720	53720					0.08102375277132978
LSRLSTLP	8	Unmodified	_LSRLSTLP_					0	0	0			REV__ENST00000357077.8_2_4:114276072-114276237:+|nuORF	REV__ENST00000357077.8_2_4:114276072-114276237:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	443.77146	885.528367	-0.15583	-6.9153E-05	0.3741	0.00016602	0.21827	9.6864E-05	443.771504984229	32.434	0.79224	32.197	31.954	32.746	-0.23666	-0.032877	0.00025459	NaN	101.21	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2690800	+		48368	30817	33588	33640							0.08102375277132978
LSRNLMRPV	9	Unmodified	_LSRNLMRPV_					0	0	0		ENST00000532896.5_1_19:18304624-18307257:+|nuORF	ENST00000532896.5_1_19:18304624-18307257:+|nuORF	ENST00000532896.5_1_19:18304624-18307257:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.3106079101562	2	543.316043	1084.61753	-0.90919	-0.00049397	1.6397	0.00089087	0.7305	0.00039689	543.316947035792	43.02	0.43693	43.02	42.859	43.296	0					16	11	2	0	0	0	0.024477	1	3995	3995		27.882	4.8398	1	149830			48369	16301	33589	33641	53721	53721					0.07860886964999736
LSRPAFKSIP	10	Unmodified	_LSRPAFKSIP_					0	0	0		CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant;CDH7|p.A734Vfs*15|1|0.19|ENSG00000081138|chr18:65880737-65880737|C/-|frameshift_variant;ENSG00000081138|ENST00000397968|CDH7	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.332275390625	2	558.332216	1114.64988	0.33786	0.00018864	-0.40493	-0.00022608	-0.067069	-3.7447E-05	558.3319252829885	59.395	0.98627	59.206	58.897	59.883	-0.18885					73	24	5	0	0	0	0.48123	1	6570	6570		90.37	23.941	1	5632800			48370	240	33590	33642	53722	53722					0.0971399763966474
LSRPAFKSIP	10	Unmodified	_LSRPAFKSIP_					0	0	0		CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant;CDH7|p.A734Vfs*15|1|0.19|ENSG00000081138|chr18:65880737-65880737|C/-|frameshift_variant;ENSG00000081138|ENST00000397968|CDH7	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.33203125	2	558.332216	1114.64988	0.18374	0.00010259	-0.49514	-0.00027645	-0.3114	-0.00017386	558.3318444181673	59.429	0.95211	59.18	58.847	59.8	-0.24841					65	23	4	0	0	0	0.61732	1	6563	6563		75.043	3.1658	1	5001100			48371	240	33590	33642	53723	53723					0.0971399763966474
LSRPLHPAL	9	Unmodified	_LSRPLHPAL_					0	0	0			REV__ENST00000342665.4_2_20:307600-308011:+|nuORF	REV__ENST00000342665.4_2_20:307600-308011:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.3067932128906	2	502.306001	1002.59745	0.30904	0.00015523	2.61	0.001311	2.9191	0.0014663	502.3072150906336	23.24	0.4993	23.038	22.78	23.279	-0.20193					19	10	2	0	0	0	0.75282	1	902	902		42.474	1.6963	1	755490	+		48372	30649	33591	33643	53724	53724					0.09625459296682948
LSRPLSAVV	9	Unmodified	_LSRPLSAVV_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2;ATF7-ATP5G2|1|fusion	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.274169921875	2	471.292559	940.570566	0.7198	0.00033924	-1.9958	-0.00094061	-1.276	-0.00060137	471.2910367447019	42.219	0.43765	42.219	41.987	42.424	0					17	12	2	0	0	0	0.023596	1	3853	3853		73.975	0	1	208550			48373	4889	33592	33644	53725	53725					0.0979035068551184
LSRPRLPLH	9	Unmodified	_LSRPRLPLH_					0	0	0			REV__ENST00000293328.7_1_17:40351843-40352023:-|nuORF	REV__ENST00000293328.7_1_17:40351843-40352023:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.8011474609375	2	544.838	1087.66145	-0.9892	-0.00053895	2.7638	0.0015058	1.7746	0.00096688	544.8385635904591	45.108	0.31933	45.008	44.868	45.188	-0.099445					11	8	2	0	0	0	0.024506	1	4234	4234		38.806	10.924	1	102090	+		48374	29957	33593	33645	53726	53726					0.12112239453654183
LSRPSLLKG	9	Unmodified	_LSRPSLLKG_					0	0	0			REV__ENSG00000095951|ENST00000379388|HIVEP1	REV__ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2369384765625	2	485.805834	969.597115	-0.23508	-0.0001142	0.022481	1.0921E-05	-0.2126	-0.00010328	485.8057380356337	35.006	0.74015	34.819	34.56	35.3	-0.18675					52	18	4	0	0	0	0.024527	1	2659	2659		24.519	6.1948	1	1580700	+		48375	20979	33594	33646	53727	53727					0.11110039576851705
LSRPSVQEV	9	Unmodified	_LSRPSVQEV_					0	0	0			REV__ENST00000460132.5_1_7:100853286-100853899:-|nuORF	REV__ENST00000460132.5_1_7:100853286-100853899:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7846374511719	2	507.782556	1013.55056	0.23321	0.00011842	3.4886	0.0017714	3.7218	0.0018899	507.78429752818664	73.015	1.1431	72.734	72.385	73.528	-0.28124					68	28	4	0	0	0	0.53979	1	8845	8845		56.721	5.3856	1	5691900	+		48376	32841	33595	33647	53728	53728					0.04432554954905754
LSRPTPYEC	9	Unmodified	_LSRPTPYEC_					0	0	0		ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	ENSG00000186230|ENST00000334181|ZNF749	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2998046875	2	533.255317	1064.49608	-0.86382	-0.00046064	0.17801	9.4926E-05	-0.68581	-0.00036571	533.2552008598902	61.599	0.78934	61.599	61.255	62.044	0					30	20	2	0	0	0	0.024495	1	7088	7088		26.693	6.2111	1	136510			48377	9531	33596	33648	53729	53729					-0.033587801881594714
LSRPVAPP	8	Unmodified	_LSRPVAPP_					0	0	0			REV__ENSG00000176428|ENST00000324941|VPS37D;REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	418.7530212402344	2	418.75307	835.491587	-0.22217	-9.3035E-05	0.45335	0.00018984	0.23118	9.6806E-05	418.7531236648737	45.534	0.99203	45.434	45.12	46.112	-0.099445					70	27	4	0	0	0	0.78609	1	4338	4338		60.294	2.4827	1	5261700	+		48378	27738;27021	33597	33649	53730	53730					0.0672612345122161
LSRQLSSGVS	10	Unmodified	_LSRQLSSGVS_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8259887695312	2	517.285463	1032.55637	0.28263	0.0001462	-0.19692	-0.00010186	0.085708	4.4335E-05	517.2865882194275	57.468	1.105	57.266	56.672	57.777	-0.20209					51	24	4	0	0	0	0.03519	1	6186	6186		51.193	7.0759	1	1054900			48379	2767	33598	33650	53731	53731					0.041396534665636864
LSRQLSSGVS	10	Unmodified	_LSRQLSSGVS_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8265380859375	2	517.285463	1032.55637	-0.28285	-0.00014631	-0.20768	-0.00010743	-0.49053	-0.00025374	517.2867832191044	57.419	0.88889	57.185	56.613	57.501	-0.23363					67	23	5	0	0	0	0.03519	1	6209	6209		37.812	0	1	1273100			48380	2767	33598	33650	53732	53732					0.041396534665636864
LSRQLVAD	8	Unmodified	_LSRQLVAD_					0	0	0			REV__ENST00000603175.1_1_2:74729816-74730080:+|nuORF	REV__ENST00000603175.1_1_2:74729816-74730080:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26885986328125	2	451.258717	900.50288	-0.81452	-0.00036756	0.82118	0.00037056	0.0066606	3.0056E-06	451.2589584108004	37.886	0.53109	37.919	37.6	38.132	0.032269					35	14	3	0	0	0	0.027866	1	3089	3089		37.159	0	1	1667900	+		48381	35894	33599	33651	53733	53733					0.0486490075469419
LSRQREAVG	9	Unmodified	_LSRQREAVG_					0	0	0			REV__ENSG00000135372|ENST00000257829|NAT10	REV__ENSG00000135372|ENST00000257829|NAT10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.287841796875	2	508.285797	1014.55704	-0.18795	-9.553E-05	3.8899	0.0019772	3.7019	0.0018816	508.28757757474756	52.773	1.1675	52.584	52.227	53.395	-0.18982					49	29	2	0	0	0	0.77768	1	5471	5471		40.778	4.3314	1	1894400	+		48382	23536	33600	33652	53734	53734					0.050344929062816846
LSRRAEVE	8	Unmodified	_LSRRAEVE_					0	0	0		ENST00000568232.1_1_15:74921900-74922221:+|nuORF	ENST00000568232.1_1_15:74921900-74922221:+|nuORF	ENST00000568232.1_1_15:74921900-74922221:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2901306152344	2	480.267073	958.519593	-0.27173	-0.0001305	4.3859	0.0021064	4.1142	0.0019759	480.26887997860297	48.755	0.59671	48.602	48.159	48.756	-0.15277					26	16	2	0	0	0	0.027866	1	4988	4988		30.504	6.3009	1	631320			48383	16975	33601	33653	53735	53735					0.03867401640661683
LSRREIPS	8	Unmodified	_LSRREIPS_					0	0	0			REV__nc|ENSG00000283228|O00305-4|CACNB4	REV__nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2801513671875	2	479.277441	956.540328	1.8949	0.0009082	2.791	0.0013376	4.6859	0.0022458	479.27863663895505	59.176	1.1292	58.989	58.538	59.667	-0.18705					88	30	4	0	0	0	0.5947	1	6707	6707		76.774	5.4784	1	7579700	+		48384	27473	33602	33654	53736	53736					0.06031992020314192
LSRREIPS	8	Unmodified	_LSRREIPS_					0	0	0			REV__nc|ENSG00000283228|O00305-4|CACNB4	REV__nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.27984619140625	2	479.277441	956.540328	0.45287	0.00021705	4.2954	0.0020587	4.7483	0.0022757	479.2793452328716	58.812	1.0979	58.898	58.481	59.579	0.086258					87	29	4	0	0	0	0.53523	1	6620	6620		82.305	5.4584	1	6738700	+		48385	27473	33602	33654	53737	53737					0.06031992020314192
LSRRFGLG	8	Unmodified	_LSRRFGLG_					0	0	0			REV__ENST00000412770.6_2_19:55770150-55770318:-|nuORF	REV__ENST00000412770.6_2_19:55770150-55770318:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.56573486328125	2	453.269419	904.524284	0.26699	0.00012102	-0.32579	-0.00014767	-0.0588	-2.6652E-05	453.2692646279072	18.801	0.24287	18.669	18.549	18.792	-0.13147					6	4	2	0	0	0	0.027866	1	333	333		8.8223	0	1	17245	+		48386	32008	33603	33655	53738	53738					0.06820330574100808
LSRRLAAL	8	Unmodified	_LSRRLAAL_					0	0	0		ENSG00000131165|ENST00000397901|CHMP1A;nc|ENSG00000131165|Q9HD42-2|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF	ENSG00000131165|ENST00000397901|CHMP1A	ENSG00000131165|ENST00000397901|CHMP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26885986328125	2	450.292894	898.571235	-1.5233	-0.00068593	-2.3356	-0.0010517	-3.8589	-0.0017376	450.29182853255526	38.276	0.47457	38.303	37.987	38.462	0.027279					27	13	3	0	0	0	0.027866	1	3089	3089		35.618	6.4687	1	317990			48387	4502	33604	33656	53739	53739					0.11789190125227833
LSRRTLMGRR	10	Unmodified	_LSRRTLMGRR_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-3|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-3|RUFY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.240234375	3	415.91554	1244.72479	0.08501	3.5357E-05	0.9603	0.0003994	1.0453	0.00043476	415.91637502945326	42.085	0.82571	41.854	41.58	42.406	-0.23029					44	22	3	0	0	0	0.03519	1	3707	3707		22.562	0	1	455810	+		48388	37076	33605	33657	53740	53740					0.112218568992148
LSRSFDEF	8	Unmodified	_LSRSFDEF_					0	0	0			REV__ENSG00000088367|ENST00000338074|EPB41L1	REV__ENSG00000088367|ENST00000338074|EPB41L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7404479980469	2	500.740357	999.46616	-0.26135	-0.00013087	-0.71791	-0.00035949	-0.97927	-0.00049036	500.73998175749404	40.792	0.82587	40.567	40.259	41.085	-0.22505					87	21	6	0	0	0	0.42327	1	3601	3601		94.006	3.4056	1	21949000	+		48389	20813	33606	33658	53741	53741					-0.03359395861855319
LSRSLCGII	9	Unmodified	_LSRSLCGII_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2923278808594	2	481.278595	960.542637	-0.85054	-0.00040935	1.1455	0.00055129	0.29492	0.00014194	481.2790857411792	55.763	0.62276	55.548	55.301	55.924	-0.21551					27	16	2	0	0	0	0.024506	1	6031	6031		23.042	4.7181	1	613500			48390	6293	33607	33659	53742	53742					0.060787044337757834
LSRSLLENK	9	Unmodified	_LSRSLLENK_					0	0	0		ENST00000330927.4_1_17:29632143-29632203:-|nuORF	ENST00000330927.4_1_17:29632143-29632203:-|nuORF	ENST00000330927.4_1_17:29632143-29632203:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.326416015625	2	530.31148	1058.60841	-0.67867	-0.0003599	-2.9994	-0.0015906	-3.6781	-0.0019505	530.3100308018453	74.367	0.41964	74.376	74.312	74.731	0.0096512					15	9	2	0	0	0	0.023093	1	9063	9063		72.879	11.907	1	135970			48391	12337	33608	33660	53743	53743					0.08144816880303551
LSRSLSPL	8	Unmodified	_LSRSLSPL_					0	0	0		ENST00000379608.7_1_6:10412292-10412529:-|nuORF	ENST00000379608.7_1_6:10412292-10412529:-|nuORF	ENST00000379608.7_1_6:10412292-10412529:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.76373291015625	2	436.763635	871.512717	-0.5177	-0.00022611	0.7102	0.00031019	0.1925	8.4078E-05	436.76382837841277	27.091	0.89476	26.848	26.571	27.466	-0.24217					54	20	4	0	0	0	0.59392	1	1459	1459		76.847	0	1	2563500			48392	13272	33609	33661	53744	53744					0.071820887600893
LSRSPSPRR	9	Unmodified	_LSRSPSPRR_					0	0	0		ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000116754|Q05519-2|SRSF11	ENSG00000116754|ENST00000370949|SRSF11	ENSG00000116754|ENST00000370949|SRSF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2740478515625	2	528.307064	1054.59957	-1.211	-0.00063976	-2.2902	-0.0012099	-3.5012	-0.0018497	528.3062700861014	46.075	0.41711	45.923	45.719	46.136	-0.15157					18	11	2	0	0	0	0.024484	1	4523	4523		37.812	8.6415	1	147600			48393	3575	33610	33662	53745	53745					0.07445888034499148
LSRSRNLN	8	Unmodified	_LSRSRNLN_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.76898193359375	2	480.27269	958.530826	-0.362	-0.00017386	-1.5136	-0.00072695	-1.8756	-0.00090081	480.2718865224311	51.847	1.16	51.699	50.935	52.095	-0.14735					56	32	2	0	0	0	0.027866	1	5489	5489		87.754	18.127	1	1804600	+		48394	22285	33611	33663	53746	53746					0.04990223734796473
LSRSVLID	8	Unmodified	_LSRSVLID_					0	0	0			REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.76873779296875	2	451.768917	901.523281	0.033579	1.517E-05	-0.33767	-0.00015255	-0.30409	-0.00013738	451.76875442995373	27.512	1.0502	27.27	26.954	28.004	-0.24217					63	24	4	0	0	0	0.50239	2	1534	1534;1546		85.359	5.4784	1	4520100	+		48395	20587	33612	33664	53747;53748	53747					0.06858071414524147
LSRSVLID	8	Unmodified	_LSRSVLID_					0	0	0			REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	REV__ENST00000598923.1_1_19:41257313-41268988:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.76861572265625	2	451.768917	901.523281	-0.19642	-8.8737E-05	0.059184	2.6737E-05	-0.13724	-6.2E-05	451.76888848152095	27.443	1.1052	27.287	26.93	28.035	-0.15664					65	26	4	0	0	0	0.50239	1	1509	1509		85.359	14.064	1	4352800	+		48396	20587	33612	33664	53749	53749					0.06858071414524147
LSRSYKEL	8	Unmodified	_LSRSYKEL_					0	0	0			REV__ENSG00000167136|ENST00000372642|ENDOG	REV__ENSG00000167136|ENST00000372642|ENDOG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.79571533203125	2	498.279649	994.544745	0.49332	0.00024581	-0.46573	-0.00023206	0.02759	1.3748E-05	498.2793823359987	58.448	1.0601	58.539	58.26	59.32	0.091221					42	28	3	0	0	0	0.027866	1	6519	6519		37.159	2.9866	1	2161600	+		48397	26112	33613	33665	53750	53750					0.04725456443236453
LSRTKRNI	8	Unmodified	_LSRTKRNI_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.78961181640625	2	494.306532	986.598512	0.55743	0.00027554	2.0823	0.0010293	2.6397	0.0013048	494.3074453488916	88.119	0.70459	88.092	87.814	88.519	-0.027657					37	16	3	0	0	0	0.027866	1	11116	11116		42.396	0	1	394520			48398	8799	33614	33666	53751	53751					0.10467673665607435
LSRVGKGTL	9	Unmodified	_LSRVGKGTL_					0	0	0			REV__ENST00000593818.5_3_19:50167869-50168989:-|nuORF	REV__ENST00000593818.5_3_19:50167869-50168989:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2198181152344	2	465.790184	929.565815	-0.51401	-0.00023942	0.56804	0.00026459	0.054029	2.5166E-05	465.79026152429293	34.27	0.23987	34.27	34.168	34.408	0					7	5	2	0	0	0	0.024427	1	2529	2529		26.693	0	1	54871	+		48399	35771	33615	33667	53752	53752					0.0982146654276903
LSSAHLPIAV	10	Unmodified	_LSSAHLPIAV_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.298095703125	2	504.297842	1006.58113	-0.28794	-0.00014521	-0.5046	-0.00025447	-0.79254	-0.00039968	504.29746516953116	61.591	1.3014	61.663	61.315	62.616	0.071125					92	34	5	0	0	0	1.0271	2	7097	7072;7097		42.396	6.3009	1	13741000	+		48400	20125	33616	33668	53753;53754	53754					0.0781033333993264
LSSAIKQGRG	10	Unmodified	_LSSAIKQGRG_					0	0	0			REV__ENST00000480980.1_1_17:29281459-29283585:+|nuORF	REV__ENST00000480980.1_1_17:29281459-29283585:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	508.7949523925781	2	508.795998	1015.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.72	1	104.56	104.06	105.06	-0.16484								0	0	0	0.74072	1	13022	13022		37.812	3.639	1		+		48401	33442	33617	33669	53755	53755					0.07027663566088904
LSSCMKTSD	9	Unmodified	_LSSCMKTSD_					0	0	0			REV__ENST00000514642.1_1_1:43002254-43055163:+|nuORF	REV__ENST00000514642.1_1_1:43002254-43055163:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2160949707031	2	486.21226	970.409968	0.28893	0.00014048	4.017	0.0019531	4.3059	0.0020936	486.2144773560208	97.787	3.7885	97.785	95.99	99.778	-0.0020752					163	87	3	0	0	0	0.91321	1	12397	12397		31.53	2.3803	1	279470	+		48402	27851	33618	33670	53756	53756					-0.07642108085190102
LSSDLLDSMTG	11	Oxidation (M)	_LSSDLLDSM(Oxidation (M))TG_		LSSDLLDSM(1)TG		LSSDLLDSM(80)TG	0	0	1		ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.2659912109375	2	577.765911	1153.51727	-0.28118	-0.00016245	-3.1443	-0.0018166	-3.4254	-0.0019791	577.7646769298752	80.027	1.0005	79.881	79.409	80.409	-0.146					58	23	4	0	0	0	0.44817	1	9586	9586		79.713	18.021	1	595320			48403	11431	33619	33671	53757	53757		466			-0.05334859669960679
LSSDLLDSMTG	11	Oxidation (M)	_LSSDLLDSM(Oxidation (M))TG_					0	0	1		ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.765911	1153.51727	-1.403	-0.00081062	-0.30203	-0.0001745	-1.7051	-0.00098512	577.7655818890875	79.915	0.58765	79.915	79.701	80.289	0	0.027202	0.0012805	NaN	79.713	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183700			48404	11431	33619	33671				466			-0.05334859669960679
LSSDLLDSMTG	11	Oxidation (M)	_LSSDLLDSM(Oxidation (M))TG_					0	0	1		ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	577.765911	1153.51727	-1.2898	-0.00074518	-0.085208	-4.923E-05	-1.375	-0.00079441	577.7656539521009	80.097	0.50197	79.945	79.715	80.217	-0.15168	0.056943	0.001531	NaN	79.713	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175820			48405	11431	33619	33671				466			-0.05334859669960679
LSSDLLDSMTG	11	Oxidation (M)	_LSSDLLDSM(Oxidation (M))TG_					0	0	1		ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	ENST00000259037.7_1_3:179322706-179332839:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.765911	1153.51727	-0.77321	-0.00044674	-0.98727	-0.00057041	-1.7605	-0.0010171	577.7652175960665	79.979	0.45956	80.001	79.729	80.189	0.021439	0.1126	0.00048868	NaN	79.713	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185690			48406	11431	33619	33671				466			-0.05334859669960679
LSSDPSLPAL	10	Unmodified	_LSSDPSLPAL_					0	0	0		nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;nc|ENSG00000165271|Q9H6R4-3|NOL6	nc|ENSG00000165271|Q9H6R4-2|NOL6	nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	500.27149	998.528426	1.2479	0.00062427	-2.8038	-0.0014027	-1.556	-0.0007784	500.270225695332	59.847	0.20314	59.847	59.711	59.914	0					7	5	2	0	0	0	0.03519	1	6843	6843		49.442	28.495	1	77839			48407	7388	33620	33672	53758	53758					0.029103304864634083
LSSELKKP	8	Unmodified	_LSSELKKP_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.24334716796875	2	451.271293	900.528032	0.73035	0.00032958	-0.77678	-0.00035054	-0.046428	-2.0952E-05	451.2707012618693	54.146	0.24294	54.244	54.15	54.393	0.098015					10	6	2	0	0	0	0.027866	1	5814	5814		47.916	0	1	557180			48408	6343	33621	33673	53759	53759					0.07378955557271638
LSSETRDTL	9	Unmodified	_LSSETRDTL_					0	0	0		nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2	nc|ENSG00000132669|Q8WYP3-2|RIN2	nc|ENSG00000132669|Q8WYP3-2|RIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2630615234375	2	511.261653	1020.50875	0.15465	7.9066E-05	3.5426	0.0018112	3.6973	0.0018903	511.26331619801516	74.893	0.87198	74.617	74.352	75.224	-0.27573					41	20	3	0	0	0	0.34489	1	8849	8849		69.628	3.1983	1	1318200			48409	4635	33622	33674	53760	53760					-0.000680455242672906
LSSETRDTL	9	Unmodified	_LSSETRDTL_					0	0	0		nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2	nc|ENSG00000132669|Q8WYP3-2|RIN2	nc|ENSG00000132669|Q8WYP3-2|RIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2632751464844	2	511.261653	1020.50875	0.39184	0.00020033	3.5407	0.0018102	3.9325	0.0020106	511.2632131103268	74.745	1.2608	74.563	74.005	75.266	-0.18279					57	29	4	0	0	0	0.22902	1	8801	8801		85.161	2.8558	1	1186800			48410	4635	33622	33674	53761	53761					-0.000680455242672906
LSSETRDTL	9	Unmodified	_LSSETRDTL_					0	0	0		nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2	nc|ENSG00000132669|Q8WYP3-2|RIN2	nc|ENSG00000132669|Q8WYP3-2|RIN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.261653	1020.50875	0.032786	1.6762E-05	3.4702	0.0017742	3.503	0.0017909	511.26348413034236	74.867	0.60918	74.608	74.492	75.101	-0.25887	0.0031384	-0.00020398	NaN	85.161	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124210			48411	4635	33622	33674							-0.000680455242672906
LSSFGQPLW	9	Unmodified	_LSSFGQPLW_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A;ENSG00000238083|ENST00000576629|LRRC37A2;ENST00000572638.1_1_17:44625595-44632942:+|nuORF	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7855224609375	2	517.768917	1033.52328	-0.81392	-0.00042142	-4.2164	-0.0021831	-5.0303	-0.0026045	517.7667614264112	44.699	0.68933	44.487	44.221	44.91	-0.21109					40	17	3	0	0	0	0.024457	1	4175	4175		37.159	11.709	1	743280			48412	8660	33623	33675	53762	53762					0.007860714144953818
LSSFNPNLY	9	Unmodified	_LSSFNPNLY_					0	0	0			REV__ENST00000347559.6_1_1:156108990-156109185:+|nuORF	REV__ENST00000347559.6_1_1:156108990-156109185:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7700805664062	2	527.763832	1053.51311	0.077762	4.104E-05	0.94789	0.00050026	1.0257	0.0005413	527.7638443302425	48.308	0.76605	48.121	47.787	48.553	-0.18684					42	20	3	0	0	0	0.023635	1	4731	4731		66.429	25.857	1	599550	+		48413	30708	33624	33676	53763	53763					-0.011505363107289668
LSSFYYVV	8	Unmodified	_LSSFYYVV_					0	0	0			REV__HCAR3|p.P299L|1|0.62|ENSG00000255398|chr12:122715842-122715842|G/A|missense_variant	REV__HCAR3|p.P299L|1|0.62|ENSG00000255398|chr12:122715842-122715842|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7276306152344	2	489.252569	976.490584	0.047371	2.3177E-05	-0.36118	-0.00017671	-0.31381	-0.00015353	489.2523470341222	79.942	2.6175	79.696	78.262	80.88	-0.2465					96	62	2	0	0	0	0.027866	1	9605	9605		42.474	1.6963	1	220410	+		48414	36092	33625	33677	53764	53764					0.0013986429166834569
LSSGAACLTP	10	Unmodified	_LSSGAACLTP_					0	0	0		ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	ENST00000327026.7_1_17:80112845-80113109:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2407531738281	2	460.23131	918.448068	0.16603	7.6413E-05	-3.462	-0.0015933	-3.296	-0.0015169	460.2295285312796	54.287	0.5211	54.14	53.784	54.305	-0.14723					35	14	3	0	0	0	0.03519	1	5921	5921		27.882	3.6795	1	1294100			48415	12287	33626	33678	53765	53765					-0.014418541082250158
LSSGARLTL	9	Unmodified	_LSSGARLTL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF;nc|ENSG00000158486|Q8TD57-3|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.27374267578125	2	459.274367	916.53418	0.039592	1.8184E-05	-0.067287	-3.0903E-05	-0.027695	-1.272E-05	459.27419557269826	34.311	0.73741	34.087	33.762	34.499	-0.22412					46	18	3	0	0	0	0.27161	1	2526	2526		79.451	2.6769	1	2902200			48416	6676	33627	33679	53766	53766					0.07257473788797597
LSSGARLTL	9	Unmodified	_LSSGARLTL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF;nc|ENSG00000158486|Q8TD57-3|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2742004394531	2	459.274367	916.53418	-0.25851	-0.00011873	0.24488	0.00011247	-0.013631	-6.2602E-06	459.274316045816	34.27	0.98732	34.063	33.824	34.812	-0.20696					55	24	4	0	0	0	0.32811	1	2533	2533		71.877	10.906	1	2601100			48417	6676	33627	33679	53767	53767					0.07257473788797597
LSSGARLTL	9	Unmodified	_LSSGARLTL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF;nc|ENSG00000158486|Q8TD57-3|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.27392578125	2	459.274367	916.53418	-0.78591	-0.00036095	0.55997	0.00025718	-0.22595	-0.00010377	459.27451523719617	34.257	0.78986	34.081	33.781	34.571	-0.17557					50	19	4	0	0	0	0.18915	1	2490	2490		90.777	3.0802	1	2617200			48418	6676	33627	33679	53768	53768					0.07257473788797597
LSSGGVVTQPL	11	Unmodified	_LSSGGVVTQPL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;STK11IP|p.A531Gfs*32|1|0.33|ENSG00000144589|chr2:219608385-219608386|-/GCTC|frameshift_variant	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2994384765625	2	529.298039	1056.58152	0.1048	5.5473E-05	-0.73635	-0.00038975	-0.63155	-0.00033428	529.2974682186262	106.31	0.71573	106.31	106.01	106.72	0					55	26	4	0	0	0	1.013	1	13681	13681		33.922	2.3918	1	603100			48419	5750	33628	33680	53769	53769					0.055497082691545074
LSSGLVPPPSS	11	Unmodified	_LSSGLVPPPSS_					0	0	0			REV__ENST00000415890.1_1_6:37786440-37786944:-|nuORF	REV__ENST00000415890.1_1_6:37786440-37786944:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7837524414062	2	520.784764	1039.55498	-0.25442	-0.0001325	-1.0335	-0.00053821	-1.2879	-0.00067071	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	0.99553	1	13268	13268		37.812	11.119	1	3782600	+		48420	32064	33629	33681	53770	53770					0.036780193777985914
LSSGQKGSAR	10	Unmodified	_LSSGQKGSAR_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.29754638671875	2	495.76998	989.525407	-0.14536	-7.2064E-05	2.4546	0.0012169	2.3093	0.0011449	495.77185649770615	54.392	0.48196	54.392	54.109	54.591	0					18	13	2	0	0	0	0.03519	1	5938	5938		70.816	15.312	1	182210	+		48421	28427	33630	33682	53771	53771					0.030225001523263018
LSSHITSLY	9	Unmodified	_LSSHITSLY_					0	0	0		ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7535705566406	2	510.771657	1019.52876	-0.25476	-0.00013012	-2.4297	-0.001241	-2.6844	-0.0013711	510.7710332835093	45.475	0.37536	45.376	45.254	45.63	-0.099449					17	10	2	0	0	0	0.022484	1	4357	4357		106.42	40.612	1	439490			48422	16888	33631	33683	53772	53772					0.019777502063334396
LSSHITSLY	9	Unmodified	_LSSHITSLY_					0	0	0		ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.75335693359375	2	510.771657	1019.52876	-0.26722	-0.00013649	-1.4928	-0.00076248	-1.76	-0.00089897	510.77107990351345	45.63	0.49052	45.377	45.258	45.748	-0.25252					24	13	2	0	0	0	0.022924	1	4389	4389		73.975	23.95	1	509110			48423	16888	33631	33683	53773	53773					0.019777502063334396
LSSHTSHF	8	Unmodified	_LSSHTSHF_					0	0	0			REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2590026855469	2	458.219591	914.42463	-0.34062	-0.00015608	1.1493	0.00052664	0.80871	0.00037057	458.21995096424234	28.105	0.73347	28.1	27.848	28.582	-0.0042019					28	17	2	0	0	0	0.027866	1	1610	1610		25.45	1.2474	1	182430	+		48424	22094	33632	33684	53774	53774					-0.03600531830534237
LSSHWLMKS	9	Unmodified	_LSSHWLMKS_					0	0	0		ENSG00000151500|ENST00000341541|THYN1;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;nc|ENSG00000151500|Q9P016-2|THYN1	ENSG00000151500|ENST00000341541|THYN1	ENSG00000151500|ENST00000341541|THYN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3160400390625	2	544.781502	1087.54845	-0.11447	-6.2359E-05	0.92055	0.0005015	0.80609	0.00043914	545.2830385393196	67.807	0.53901	67.573	67.217	67.756	-0.23376					20	12	2	0	0	0	0.024541	1	7830	7830		14.137	0	1	95091			48425	6207	33633	33685	53775	53775					0.008178029454484204
LSSIEVKKEK	10	Unmodified	_LSSIEVKKEK_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	580.829345703125	2	580.847896	1159.68124	-1.5175	-0.00088143	3.8989	0.0022647	2.3814	0.0013832	580.8506620408357	47.668	0.15665	47.668	47.591	47.748	0					6	4	2	0	0	0	0.03519	1	4802	4802		36.447	14.761	1	163160	+		48426	24351	33634	33686	53776	53776					0.10778525883074508
LSSIGLRTV	9	Unmodified	_LSSIGLRTV_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7450256347656	2	473.290017	944.565481	0.27685	0.00013103	-0.70195	-0.00033223	-0.4251	-0.0002012	473.2895232082667	48.647	0.5209	48.647	48.413	48.934	0					31	14	3	0	0	0	0.023093	1	5020	5020		82.75	0.44546	1	527900	+		48427	25474	33635	33687	53777	53777					0.0909804682290769
LSSIGLRTV	9	Unmodified	_LSSIGLRTV_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	473.290017	944.565481	0.025714	1.217E-05	-0.2956	-0.0001399	-0.26988	-0.00012773	473.2897144016407	48.54	0.4958	48.607	48.339	48.835	0.066795	-0.0013536	-0.00021179	NaN	82.75	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469440	+		48428	25474	33635	33687							0.0909804682290769
LSSIGLRTV	9	Unmodified	_LSSIGLRTV_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.290017	944.565481	-0.62668	-0.0002966	0.49585	0.00023468	-0.13083	-6.1919E-05	473.2900279776274	48.612	0.51139	48.511	48.253	48.765	-0.1008	-0.09723	0.00053738	NaN	82.75	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483660	+		48429	25474	33635	33687							0.0909804682290769
LSSIGLRTV	9	Unmodified	_LSSIGLRTV_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.290017	944.565481	-0.61842	-0.00029269	0.44012	0.0002083	-0.17831	-8.4391E-05	473.29011590859494	48.915	0.43115	48.636	48.394	48.825	-0.27977	0.027743	0.00048462	NaN	82.75	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453080	+		48430	25474	33635	33687							0.0909804682290769
LSSIGLRTV	9	Unmodified	_LSSIGLRTV_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.290017	944.565481	-0.40921	-0.00019368	0.10821	5.1213E-05	-0.301	-0.00014246	473.29007327458976	48.759	0.47041	48.577	48.339	48.809	-0.18206	-0.030789	0.00017044	NaN	82.75	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581640	+		48431	25474	33635	33687							0.0909804682290769
LSSIKDAVL	9	Unmodified	_LSSIKDAVL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7545471191406	2	473.2844	944.554247	0.91808	0.00043451	-1.8609	-0.00088072	-0.94279	-0.00044621	473.28329367732664	39.948	1.0626	39.948	39.594	40.657	0					44	29	3	0	0	0	0.024021	1	3440	3440		49.442	10.189	1	509770			48432	1466	33636	33688	53778	53778					0.07975224728750163
LSSIRTYD	8	Unmodified	_LSSIRTYD_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.28179931640625	2	477.748182	953.481811	0.22575	0.00010785	-0.20846	-9.9589E-05	0.017299	8.2644E-06	477.7480620044059	50.819	0.61724	50.67	50.39	51.008	-0.14916					41	17	3	0	0	0	0.027866	1	5296	5296		34.173	0	1	1278300	+		48433	20569	33637	33689	53779	53779					0.003208906551662949
LSSKAARDV	9	Unmodified	_LSSKAARDV_					0	0	0		nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.76934814453125	2	473.769448	945.524344	0.30053	0.00014238	-0.38012	-0.00018009	-0.079586	-3.7705E-05	473.76917778305074	20.472	0.73465	20.304	20.049	20.784	-0.16774					30	14	3	0	0	0	0.15366	1	556	556		98.629	0	1	837220			48434	3547	33638	33690	53780	53780					0.04940285783413856
LSSKAARDV	9	Unmodified	_LSSKAARDV_					0	0	0		nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	nc|ENSG00000116396|Q03721-2|KCNC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.769448	945.524344	0.8748	0.00041446	-0.76401	-0.00036196	0.11079	5.249E-05	473.7689723381715	20.551	0.44514	20.355	20.088	20.533	-0.19577	0.025793	-0.0002721	NaN	98.629	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144650			48435	3547	33638	33690							0.04940285783413856
LSSKKIYPP	9	Unmodified	_LSSKKIYPP_					0	0	0		ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.29541015625	2	516.808042	1031.60153	-0.70937	-0.00036661	1.2241	0.00063264	0.51476	0.00026603	516.8085746358404	37.161	0.38557	36.942	36.767	37.152	-0.2195					15	9	2	0	0	0	0.024021	1	2951	2951		68.787	0	1	193150			48436	1587	33639	33691	53781	53781					0.08699503999741864
LSSKLESPM	9	Unmodified	_LSSKLESPM_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.29754638671875	2	496.260068	990.505582	0.31701	0.00015732	-2.0631	-0.0010238	-1.7461	-0.0008665	496.25884995373843	53.575	0.98894	53.575	53.439	54.428	0					44	27	2	0	0	0	0.024205	1	5938	5938		53.351	0	1	242760	+		48437	26603	33640	33692	53782	53782					0.00994988097352234
LSSKSRGLVV	10	Unmodified	_LSSKSRGLVV_					0	0	0			REV__nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	REV__nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2803955078125	2	523.321848	1044.62914	-1.2459	-0.00065201	-0.59332	-0.0003105	-1.8392	-0.0009625	523.3213724875718	38.882	0.34047	38.909	38.691	39.032	0.027279					12	8	2	0	0	0	0.03519	1	3226	3226		32.812	4.9302	1	109600	+		48438	29007	33641	33693	53783	53783					0.10861407259994849
LSSKTALSS	9	Unmodified	_LSSKTALSS_					0	0	0		nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1;RSF1|p.K1002Nfs*18|1|0.29|ENSG00000048649|chr11:77683769-77683769|T/-|frameshift_variant	nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.235107421875	2	447.250557	892.486562	-0.048121	-2.1522E-05	1.6913	0.00075644	1.6432	0.00073492	447.2510227190663	26.51	0.53781	26.51	26.203	26.741	0					17	12	2	0	0	0	0.024261	1	1379	1379		54.776	15.97	1	55737			48439	1118	33642	33694	53784	53784					0.03601774797948565
LSSLAAGSLF	10	Unmodified	_LSSLAAGSLF_					0	0	0			REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.268310546875	2	483.26875	964.522947	-0.16559	-8.0023E-05	-0.52365	-0.00025306	-0.68923	-0.00033308	483.26849683747514	46.63	1.7265	46.369	45.815	47.542	-0.26118					131	46	5	0	0	0	0.47726	1	4467	4467		90.777	0.1758	1	43900000	+		48440	33146	33643	33695	53785	53785					0.03926651694666816
LSSLALLQMF	10	Unmodified	_LSSLALLQMF_					0	0	0		ENST00000559771.5_2_15:63807655-63829253:+|nuORF	ENST00000559771.5_2_15:63807655-63829253:+|nuORF	ENST00000559771.5_2_15:63807655-63829253:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.279541015625	2	561.81501	1121.61547	0.34745	0.0001952	0.80215	0.00045066	1.1496	0.00064586	561.8142863072974	85.009	0.62068	84.871	84.577	85.197	-0.13753					20	14	2	0	0	0	0.03519	1	10260	10260		49.442	6.5773	1	100740			48441	16787	33644	33696	53786	53786					0.05952413436534698
LSSLESTHWL	10	Unmodified	_LSSLESTHWL_					0	0	0		nc|ENSG00000171100|Q13496-2|MTM1;ENSG00000171100|ENST00000370396|MTM1	nc|ENSG00000171100|Q13496-2|MTM1	nc|ENSG00000171100|Q13496-2|MTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.73779296875	2	586.800946	1171.58734	-1.6831	-0.00098765	2.6532	0.0015569	0.97009	0.00056925	586.8022500356557	28.586	0.42373	28.341	28.241	28.665	-0.24524					16	9	2	0	0	0	0.03519	1	1697	1697		29.15	1.2673	1	63023			48442	8110	33645	33697	53787	53787					0.008408067807977204
LSSLFPCTL	9	Unmodified	_LSSLFPCTL_					0	0	0			REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.7608337402344	2	490.759704	979.504854	0.049494	2.429E-05	-0.40469	-0.00019861	-0.3552	-0.00017432	490.7593032215925	86.62	0.93617	86.575	86.206	87.142	-0.045105					44	21	3	0	0	0	0.024354	1	10878	10878		30.504	0	1	297040	+		48443	34677	33646	33698	53788	53788					0.014281934483051373
LSSLFPCTL	9	Unmodified	_LSSLFPCTL_					0	0	0			REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.759704	979.504854	-0.39251	-0.00019263	0.57705	0.00028319	0.18454	9.0564E-05	490.7597256602648	86.61	0.48045	86.423	86.167	86.647	-0.18696	-0.09346	0.00087918	NaN	63.306	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89071	+		48444	34677	33646	33698							0.014281934483051373
LSSLFPCTL	9	Unmodified	_LSSLFPCTL_					0	0	0			REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.759704	979.504854	0.72354	0.00035508	-0.72676	-0.00035666	-0.0032151	-1.5778E-06	490.7591607047953	86.615	0.81212	86.473	86.191	87.003	-0.14217	-0.043676	-0.00040053	NaN	63.306	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105720	+		48445	34677	33646	33698							0.014281934483051373
LSSLFPCTL	9	Unmodified	_LSSLFPCTL_					0	0	0			REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	REV__ENST00000535731.1_1_12:12419696-12419816:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.759704	979.504854	0.36524	0.00017924	-0.81726	-0.00040108	-0.45203	-0.00022184	490.7594816953984	86.568	0.65115	86.431	86.136	86.787	-0.13734	-0.085542	-0.00048937	NaN	63.306	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111710	+		48446	34677	33646	33698							0.014281934483051373
LSSLGLAVATF	11	Unmodified	_LSSLGLAVATF_					0	0	0		ENST00000474478.5_1_1:226048558-226048795:-|nuORF	ENST00000474478.5_1_1:226048558-226048795:-|nuORF	ENST00000474478.5_1_1:226048558-226048795:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.76416015625	2	539.810782	1077.60701	-0.49908	-0.00026941	1.1058	0.0005969	0.60668	0.00032749	539.8111786225813	50.026	0.78816	49.845	49.345	50.133	-0.18071					37	20	2	0	0	0	0.024747	1	5037	5037		24.519	0.31644	1	630270			48447	15034	33647	33699	53789	53789					0.0713118279156788
LSSLHLTPK	9	Unmodified	_LSSLHLTPK_					0	0	0		ENST00000455957.5_1_6:30201906-30202163:-|nuORF	ENST00000455957.5_1_6:30201906-30202163:-|nuORF	ENST00000455957.5_1_6:30201906-30202163:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.77215576171875	2	498.297842	994.581131	-0.16555	-8.2492E-05	-0.2782	-0.00013863	-0.44375	-0.00022112	498.2974912261163	24.345	0.59704	24.17	23.786	24.383	-0.17484					26	13	3	0	0	0	0.024477	1	1060	1060		20.947	4.2295	1	174400			48448	14591	33648	33700	53790	53790					0.08362333339948691
LSSLLKSKP	9	Unmodified	_LSSLLKSKP_					0	0	0		ENST00000293880.9_1_11:57094898-57095944:-|nuORF	ENST00000293880.9_1_11:57094898-57095944:-|nuORF	ENST00000293880.9_1_11:57094898-57095944:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2871398925781	2	486.808042	971.601532	-0.12167	-5.9229E-05	-1.8477	-0.00089948	-1.9694	-0.00095871	486.8081193042988	29.032	0.34359	28.882	28.7	29.044	-0.14952					12	7	2	0	0	0	0.024511	1	1731	1731		25.574	0	1	46181			48449	11810	33649	33701	53791	53791					0.11459503999753906
LSSLLPKLD	9	Unmodified	_LSSLLPKLD_					0	0	0			REV__nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	REV__nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.287353515625	2	493.30005	984.585547	0.48029	0.00023693	-0.84316	-0.00041593	-0.36287	-0.000179	493.299621150033	22.554	0.18274	22.352	22.285	22.468	-0.20199					5	3	2	0	0	0	0.024397	1	789	789		24.519	0	1	128900	+		48450	27695	33650	33702	53792	53792					0.09263797762855575
LSSLLQSTP	9	Unmodified	_LSSLLQSTP_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.27191162109375	2	473.266207	944.517862	-0.41358	-0.00019574	0.69973	0.00033116	0.28615	0.00013542	473.26642311747713	64.87	0.53673	64.87	64.69	65.226	0					37	14	3	0	0	0	0.024292	1	7634	7634		49.442	5.3247	1	1204600	+		48451	20312	33651	33703	53793	53793					0.04338347832049294
LSSLLTYPQ	9	Unmodified	_LSSLLTYPQ_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7535705566406	2	511.281857	1020.54916	-0.090048	-4.604E-05	3.685	0.0018841	3.595	0.001838	511.28223061442696	45.638	0.17137	45.542	45.461	45.632	-0.096649					6	4	2	0	0	0	0.024319	1	4357	4357		47.657	0	1	46945			48452	2029	33652	33704	53794	53794					0.03970920866140659
LSSLLVLRA	9	Unmodified	_LSSLLVLRA_					0	0	0		ENST00000344229.7_1_3:149531007-149531067:+|nuORF	ENST00000344229.7_1_3:149531007-149531067:+|nuORF	ENST00000344229.7_1_3:149531007-149531067:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2272644042969	2	486.316035	970.617516	-0.38084	-0.00018521	-0.39865	-0.00019387	-0.7795	-0.00037908	486.31577950552924	54.537	0.39973	54.391	54.208	54.608	-0.14609					19	10	2	0	0	0	0.024319	1	5822	5822		39.253	14.734	1	209260			48453	12547	33653	33705	53795	53795					0.13103210236658924
LSSLLVSGPL	10	Unmodified	_LSSLLVSGPL_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.29986572265625	2	493.30005	984.585547	0.080747	3.9832E-05	3.9765	0.0019616	4.0572	0.0020014	493.3016499522218	105.95	0.42146	105.95	105.78	106.2	-0.0013199					20	14	2	0	0	0	1.1267	1	13562	13562		29.15	1.2673	1	99876	+		48454	27290	33654	33706	53796	53796					0.09263797762855575
LSSLQKKR	8	Unmodified	_LSSLQKKR_					0	0	0		ENST00000380637.7_1_21:40834409-40883616:+|nuORF;ENST00000458295.5_2_21:40834466-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	ENST00000380637.7_1_21:40834409-40883616:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.28900146484375	2	480.303458	958.592364	1.0414	0.00050017	1.8406	0.00088403	2.8819	0.0013842	480.30410555860146	65.993	0.5015	65.993	65.643	66.145	0					17	12	2	0	0	0	0.027866	1	7831	7831		42.396	0	1	111590			48455	13315	33655	33707	53797	53797					0.1114115543407479
LSSLRELCI	9	Unmodified	_LSSLRELCI_					0	0	0		ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.22119140625	2	517.289159	1032.56377	-0.96616	-0.00049979	-0.16657	-8.6165E-05	-1.1327	-0.00058595	517.2889148051945	36.055	0.44671	36.093	35.927	36.374	0.038044					16	12	2	0	0	0	0.024205	1	2773	2773		44.117	24.12	1	112160			48456	8498	33656	33708	53798	53798					0.048786697426066894
LSSLSFAVIA	10	Unmodified	_LSSLSFAVIA_					0	0	0			REV__ENSG00000144671|ENST00000448498|SLC22A14	REV__ENSG00000144671|ENST00000448498|SLC22A14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.296630859375	2	504.292225	1006.5699	-0.034167	-1.723E-05	-0.49474	-0.00024949	-0.52891	-0.00026672	504.29179141852035	61.609	0.74107	61.395	60.803	61.544	-0.21375					26	17	3	0	0	0	0.03519	1	6912	6912		25.574	0	1	634590	+		48457	24350	33657	33709	53799	53799					0.0668751124579785
LSSLSNAPI	9	Unmodified	_LSSLSNAPI_					0	0	0			REV__ENSG00000103449|ENST00000251020|SALL1	REV__ENSG00000103449|ENST00000251020|SALL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2890625	2	451.2531	900.491647	0.56961	0.00025704	-0.27588	-0.00012449	0.29373	0.00013254	451.2528851152815	55.841	0.99891	55.841	55.536	56.535	0					50	27	3	0	0	0	0.023007	1	6203	6203		66.429	7.6473	1	1574200	+		48458	21386	33658	33710	53800	53800					0.037420786605480316
LSSLSNAPI	9	Unmodified	_LSSLSNAPI_					0	0	0			REV__ENSG00000103449|ENST00000251020|SALL1	REV__ENSG00000103449|ENST00000251020|SALL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2899169921875	2	451.2531	900.491647	0.037146	1.6762E-05	0.30299	0.00013673	0.34014	0.00015349	451.2531322480462	55.978	1.026	55.822	55.442	56.468	-0.15601					52	27	4	0	0	0	0.023007	1	6184	6184		76.774	7.9873	1	1315600	+		48459	21386	33658	33710	53801	53801					0.037420786605480316
LSSNGTVYTV	10	Unmodified	_LSSNGTVYTV_					0	0	0		ENST00000246229.4_1_20:30783587-30783725:-|nuORF	ENST00000246229.4_1_20:30783587-30783725:-|nuORF	ENST00000246229.4_1_20:30783587-30783725:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7664184570312	2	520.766571	1039.51859	-0.22166	-0.00011544	-0.48415	-0.00025213	-0.70582	-0.00036756	520.7662782590676	47.647	4.0898	47.494	46.698	50.788	-0.153					259	116	4	0	0	0	0.62431	1	4802	4802		74.255	4.6274	1	67190000			48460	11321	33659	33711	53802	53802					0.00041142481086353655
LSSNVVSIV	9	Unmodified	_LSSNVVSIV_					0	0	0			REV__ENST00000338045.7_1_2:109276158-109288816:+|nuORF	REV__ENST00000338045.7_1_2:109276158-109288816:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2685241699219	2	459.26875	916.522947	-0.46174	-0.00021206	1.013	0.00046525	0.5513	0.00025319	459.2691290493807	48.112	0.69985	48.015	47.557	48.257	-0.097553					46	18	3	0	0	0	0.2508	1	4751	4751		82.241	2.5279	1	4953900	+		48461	30572	33660	33712	53803	53803					0.06134651694662807
LSSPKTMVN	9	Unmodified	_LSSPKTMVN_					0	0	0		nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.77471923828125	2	488.760235	975.505917	-1.1314	-0.00055297	-2.3395	-0.0011435	-3.4709	-0.0016964	488.75899539204914	55.804	0.6116	55.902	55.561	56.173	0.097927					41	16	3	0	0	0	0.024261	1	6128	6128		54.776	0	1	1495800			48462	1151	33661	33713	53804	53804					0.01718407817213574
LSSPLRAPA	9	Unmodified	_LSSPLRAPA_					0	0	0			REV__LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	REV__LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2689208984375	2	456.269084	910.523616	-0.82896	-0.00037823	0.90766	0.00041414	0.078702	3.5909E-05	456.26934404313107	27.676	0.93804	27.508	27.317	28.255	-0.16816					58	22	5	0	0	0	0.31247	1	1567	1567		73.975	0	1	2920900	+		48463	25405	33662	33714	53805	53805					0.06477491134364755
LSSPVESVLFY	11	Unmodified	_LSSPVESVLFY_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	620.8265380859375	2	620.826629	1239.63871	-0.71327	-0.00044282	0.90088	0.00055929	0.18761	0.00011647	620.8270851838261	89.836	1.0417	89.673	89.052	90.093	-0.1626					66	24	4	0	0	0	0.017859	3	10991	10967;10975;10991		131.03	66.824	1	1203100			48464	8411	33663	33715	53806;53807;53808	53808					0.028471307548443292
LSSPVESVLFY	11	Unmodified	_LSSPVESVLFY_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	620.82666015625	2	620.826629	1239.63871	-1.3963	-0.00086687	1.4847	0.00092171	0.088338	5.4842E-05	620.8274430818602	89.855	1.2499	89.727	89.079	90.329	-0.12775					76	29	4	0	0	0	0.078638	3	10987	10975;10987;10999		113.41	46.982	1	1203600			48465	8411	33663	33715	53809;53810;53811	53810					0.028471307548443292
LSSPVESVLFY	11	Unmodified	_LSSPVESVLFY_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	620.8267211914062	2	620.826629	1239.63871	0.28727	0.00017834	-0.28552	-0.00017726	0.0017442	1.0828E-06	620.8263615039629	89.888	1.174	89.749	89.147	90.321	-0.13824					78	27	4	0	0	0	0.048406	4	10983	10960;10970;10983;10996		122.18	56.691	1	1286300			48466	8411	33663	33715	53812;53813;53814;53815	53814					0.028471307548443292
LSSPVQSQ	8	Unmodified	_LSSPVQSQ_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2226867675781	2	423.2218	844.429047	-1.5201	-0.00064334	3.528	0.0014931	2.0079	0.00084979	423.22313832743345	29.476	1.2353	29.476	29.149	30.384	0					62	30	4	0	0	0	1.0106	1	1802	1802		35.618	0	1	1619800	+		48467	36745	33664	33716	53816	53816					0.0006093259238468818
LSSPVTKSF	9	Unmodified	_LSSPVTKSF_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2684020996094	2	483.26875	964.522947	0.28322	0.00013687	-0.92262	-0.00044587	-0.6394	-0.000309	483.26827531432946	46.35	1.6766	46.254	45.741	47.418	-0.096649					124	45	5	0	0	0	0.071379	4	4475	4451;4463;4475;4488		120.87	30.092	1	37009000			48468	18677	33665	33717	53817;53818;53819;53820	53819					0.03926651694678185
LSSPVTKSF	9	Unmodified	_LSSPVTKSF_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.2682189941406	2	483.26875	964.522947	-0.16559	-8.0023E-05	-0.52365	-0.00025306	-0.68923	-0.00033308	483.26849683747514	46.63	1.7265	46.369	45.815	47.542	-0.26118					131	46	5	0	0	0	0.062622	5	4491	4456;4479;4491;4503;4516		124.08	24.318	1	43900000			48469	18677	33665	33717	53821;53822;53823;53824;53825	53823					0.03926651694678185
LSSPVTKSF	9	Unmodified	_LSSPVTKSF_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2684631347656	2	483.26875	964.522947	-0.38259	-0.00018489	-0.56055	-0.0002709	-0.94315	-0.00045579	483.2684886384797	46.482	1.6975	46.279	45.744	47.442	-0.20226					123	46	5	0	0	0	0.079716	5	4450	4450;4462;4474;4486;4499		117.81	27.173	1	58660000			48470	18677	33665	33717	53826;53827;53828;53829;53830	53826					0.03926651694678185
LSSQLPPPTHA	11	Unmodified	_LSSQLPPPTHA_					0	0	0		ENST00000415560.1_1_X:26766465-26767074:+|nuORF	ENST00000415560.1_1_X:26766465-26767074:+|nuORF	ENST00000415560.1_1_X:26766465-26767074:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.7748413085938	2	574.308938	1146.60332	-0.64199	-0.0003687	4.4546	0.0025583	3.8126	0.0021896	574.3107870400369	34.68	0.52231	34.495	34.2	34.722	-0.18536					28	12	3	0	0	0	0.024732	1	2544	2544		19.104	3.4617	1	124720			48471	13880	33666	33718	53831	53831					0.03588513017712103
LSSQQRAR	8	Unmodified	_LSSQQRAR_					0	0	0			REV__ENST00000605833.1_1_10:17258248-17271432:-|nuORF	REV__ENST00000605833.1_1_10:17258248-17271432:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2817077636719	2	473.264865	944.515176	-0.16669	-7.8891E-05	2.1639	0.0010241	1.9972	0.00094521	473.26551032569563	65.231	0.98474	64.997	64.687	65.672	-0.2345					56	23	3	0	0	0	0.027866	1	7487	7487		53.351	0	1	566690	+		48472	35923	33667	33719	53832	53832					0.04069937217752795
LSSQRTVNP	9	Unmodified	_LSSQRTVNP_					0	0	0		ENST00000598424.5_1_19:17581379-17594898:+|nuORF	ENST00000598424.5_1_19:17581379-17594898:+|nuORF	ENST00000598424.5_1_19:17581379-17594898:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.801025390625	2	501.272355	1000.53016	0.13068	6.5506E-05	3.4751	0.001742	3.6058	0.0018075	501.2740190542201	46.475	0.93884	46.475	45.953	46.892	0					53	25	3	0	0	0	0.024261	1	4646	4646		45.972	13.16	1	1487000			48473	17469	33668	33720	53833	53833					0.02991384295091848
LSSRMRLL	8	Unmodified	_LSSRMRLL_					0	0	0		ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2884216308594	2	488.292037	974.56952	-1.2629	-0.00061666	-0.27095	-0.0001323	-1.5338	-0.00074896	488.29203477232403	55.531	0.59985	55.629	55.294	55.894	0.098015					25	15	2	0	0	0	0.71833	1	6074	6074		65.803	0	1	734700			48474	16979	33669	33721	53834	53834					0.0812181304496562
LSSRQSLKT	9	Unmodified	_LSSRQSLKT_					0	0	0			REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8009338378906	2	510.29583	1018.57711	0.20036	0.00010224	1.2765	0.00065139	1.4768	0.00075363	510.29612413942084	59.794	0.33468	59.594	59.356	59.691	-0.20016					20	8	4	0	0	0	0.0245	1	6779	6779		29.17	2.374	1	1498600	+		48475	30900	33670	33722	53835	53835					0.06856243846232246
LSSRQSLKT	9	Unmodified	_LSSRQSLKT_					0	0	0			REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.29583	1018.57711	1.2111	0.00061804	3.7067	0.0018915	4.9178	0.0025095	510.2975210939356	59.836	0.58192	59.639	59.256	59.838	-0.19742	0.055541	-0.00029744	NaN	16.717	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347190	+		48476	30900	33670	33722							0.06856243846232246
LSSRQSLKT	9	Unmodified	_LSSRQSLKT_					0	0	0			REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.29583	1018.57711	0.45773	0.00023358	3.8896	0.0019848	4.3473	0.0022184	510.29780646642774	59.67	0.41978	59.494	59.321	59.741	-0.1761	-0.089243	-0.00011075	NaN	16.717	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387940	+		48477	30900	33670	33722							0.06856243846232246
LSSRQSLKT	9	Unmodified	_LSSRQSLKT_					0	0	0			REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	REV__ENST00000360254.3_1_1:223101833-223101902:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.29583	1018.57711	-0.08689	-4.434E-05	4.8488	0.0024743	4.7619	0.00243	510.29819666533444	59.855	0.4225	59.607	59.377	59.8	-0.24842	0.023314	0.0008682	NaN	16.717	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283620	+		48478	30900	33670	33722							0.06856243846232246
LSSRQVRN	8	Unmodified	_LSSRQVRN_					0	0	0		PIK3AP1|p.S39N|1|0.55|ENSG00000155629|chr10:96709881-96709881|C/T|missense_variant	PIK3AP1|p.S39N|1|0.55|ENSG00000155629|chr10:96709881-96709881|C/T|missense_variant	PIK3AP1|p.S39N|1|0.55|ENSG00000155629|chr10:96709881-96709881|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7355041503906	2	480.27269	958.530826	0.18308	8.793E-05	0.7526	0.00036145	0.93568	0.00044938	480.27312114151846	59.843	0.50839	59.643	59.393	59.901	-0.20016					34	13	3	0	0	0	0.027866	1	6815	6815		53.351	2.016	1	1470200			48479	18965	33671	33723	53836	53836					0.049902237348078415
LSSSFVAR	8	Unmodified	_LSSSFVAR_					0	0	0		ENST00000478720.1_1_2:24427048-24428185:-|nuORF	ENST00000478720.1_1_2:24427048-24428185:-|nuORF	ENST00000478720.1_1_2:24427048-24428185:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.77685546875	2	433.74016	865.465767	0.033496	1.4529E-05	0.24918	0.00010808	0.28268	0.00012261	433.74020731433706	31.669	0.52715	31.484	31.208	31.736	-0.18503					19	12	2	0	0	0	0.027866	1	2143	2143		17.365	0	1	159250			48480	15154	33672	33724	53837	53837					0.027652292089555885
LSSSHVQIKN	10	Unmodified	_LSSSHVQIKN_					0	0	0			REV__ZC2HC1C|p.S278Afs*55|1|0.24|ENSG00000119703|chr14:75071402-75071402|A/-|frameshift_variant	REV__ZC2HC1C|p.S278Afs*55|1|0.24|ENSG00000119703|chr14:75071402-75071402|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2889404296875	2	556.806562	1111.59857	-0.66038	-0.00036771	3.6962	0.0020581	3.0358	0.0016904	556.8085737710438	64.732	0.66386	64.732	64.46	65.124	0					55	17	4	0	0	0	0.03519	1	7689	7689		32.812	0	1	2972800	+		48481	37791	33673	33725	53838	53838					0.04723628874944552
LSSSIFTKDLG	11	Unmodified	_LSSSIFTKDLG_					0	0	0		nc|ENSG00000164904|P49419-4|ALDH7A1;nc|ENSG00000164904|P49419-2|ALDH7A1;ENSG00000164904|ENST00000409134|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2992553710938	2	584.316428	1166.6183	-0.97363	-0.00056891	-1.6899	-0.00098742	-2.6635	-0.0015563	584.3148564415042	44.048	0.14386	43.943	43.817	43.96	-0.10468					5	3	2	0	0	0	0.024771	1	4078	4078		35.152	10.633	1	148020			48482	7340	33674	33726	53839	53839					0.04165960095019727
LSSSLHQKL	9	Unmodified	_LSSSLHQKL_					0	0	0		nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-2|HMMR	nc|ENSG00000072571|O75330-2|HMMR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.30010986328125	2	506.792924	1011.57129	-0.41126	-0.00020843	1.0376	0.00052583	0.62629	0.0003174	506.79352712623734	32.101	0.43191	32.164	31.921	32.352	0.062885					25	10	4	0	0	0	0.023837	1	2177	2177		64.207	23.429	1	1377000			48483	18076	33675	33727	53840	53840					0.06597145334569632
LSSSTYPYMKV	11	Unmodified	_LSSSTYPYMKV_					0	0	0			REV__ENSG00000165186|ENST00000379361|PTCHD1	REV__ENSG00000165186|ENST00000379361|PTCHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.89007568359375	3	425.881168	1274.62167	-0.52526	-0.0002237	-1.8265	-0.00077787	-2.3518	-0.0010016	425.8804533788961	20.642	0.66938	20.537	20.227	20.897	-0.10477					17	13	2	0	0	0	0.024727	1	547	547		17.833	10.814	1	23134	+		48484	25852	33676	33728	53841	53841					-0.00465113122618277
LSSTQLCQRA	10	Unmodified	_LSSTQLCQRA_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.831787109375	2	553.784773	1105.55499	0.35084	0.00019429	1.121	0.00062081	1.4719	0.00081511	553.7853339703967	53.181	0.61502	52.923	52.683	53.298	-0.25838					28	15	2	0	0	0	0.03519	1	5554	5554		26.693	0	1	268530	+		48485	21825	33677	33729	53842	53842					0.006436961061581314
LSSTRSLLE	9	Unmodified	_LSSTRSLLE_					0	0	0			REV__ENSG00000221829|ENST00000378643|FANCG	REV__ENSG00000221829|ENST00000378643|FANCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.3048400878906	2	503.282389	1004.55022	0.38003	0.00019126	-2.1269	-0.0010704	-1.7468	-0.00087916	503.2810996014068	68.119	0.68118	68.138	67.781	68.462	0.018913					33	17	3	0	0	0	0.022411	1	8094	8094		69.628	0	1	504880	+		48486	28829	33678	33730	53843	53843					0.048131352350424095
LSSVAKHLF	9	Unmodified	_LSSVAKHLF_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|291|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|291|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|291|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29193115234375	2	501.292559	1000.57057	-0.97205	-0.00048728	0.34167	0.00017127	-0.63038	-0.000316	501.2927162977392	45.644	1.4925	45.442	44.879	46.372	-0.20226					117	41	4	0	0	0	0.25032	1	4374	4374		82.305	2.3658	1	23005000			48487	17879	33679	33731	53844	53844					0.07030350685511166
LSSVEAYNI	9	Unmodified	_LSSVEAYNI_					0	0	0		nc|ENSG00000117153|Q53G59-2|KLHL12;ENST00000426448.1_1_22:20805532-20806108:+|nuORF;nc|ENSG00000109466|O95198-3|KLHL2;ENSG00000117153|ENST00000367261|KLHL12;ENSG00000109466|ENST00000226725|KLHL2;nc|ENSG00000109466|O95198-2|KLHL2	nc|ENSG00000117153|Q53G59-2|KLHL12	nc|ENSG00000117153|Q53G59-2|KLHL12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2562561035156	2	498.25584	994.497126	-0.49314	-0.00024571	0.63106	0.00031443	0.13792	6.8719E-05	498.25594618553873	80.138	0.75639	80.16	79.855	80.612	0.021446					36	17	3	0	0	0	0.39228	1	9890	9890		66.429	2.222	1	632400			48488	18199	33680	33732	53845	53845					-0.00034242547633311915
LSSVGQGRR	9	Unmodified	_LSSVGQGRR_					0	0	0		ENST00000581067.1_1_18:5237784-5237997:-|nuORF	ENST00000581067.1_1_18:5237784-5237997:-|nuORF	ENST00000581067.1_1_18:5237784-5237997:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7355651855469	2	480.27269	958.530826	1.4274	0.00068555	0.5927	0.00028466	2.0201	0.0009702	480.27284664744906	59.962	0.48233	59.765	59.537	60.02	-0.19742					17	12	2	0	0	0	0.024205	1	6636	6636		63.306	11.971	1	193840			48489	17157	33681	33733	53846	53846					0.049902237348078415
LSSVIITIN	9	Unmodified	_LSSVIITIN_					0	0	0			REV__ADAM2|p.L225V|1|0.11|ENSG00000104755|chr8:39788221-39788221|G/C|missense_variant	REV__ADAM2|p.L225V|1|0.11|ENSG00000104755|chr8:39788221-39788221|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7355041503906	2	480.292225	958.569897	1.4044	0.00067451	-1.6392	-0.00078731	-0.23486	-0.0001128	480.2913174786458	59.436	0.76829	59.235	58.923	59.691	-0.20016					39	20	3	0	0	0	0.024209	1	6815	6815		47.657	8.4045	1	688770	+		48490	19062	33682	33734	53847	53847					0.0889551124580521
LSSVITTI	8	Unmodified	_LSSVITTI_					0	0	0		SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant;ENST00000528658.1_1_8:70673979-70744908:-|nuORF;ENST00000532388.5_1_8:70617264-70744908:-|nuORF;nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant	SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.8917236328125	2	417.252569	832.490584	-0.64284	-0.00026823	0.34158	0.00014253	-0.30126	-0.0001257	417.2522504339102	38.126	0.71326	37.946	37.557	38.27	-0.17929					33	20	2	0	0	0	0.027866	1	3116	3116		12.207	5.4713	1	550630			48491	5138	33683	33735	53848	53848					0.06763864291656319
LSSVITTI	8	Unmodified	_LSSVITTI_					0	0	0		SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant;ENST00000528658.1_1_8:70673979-70744908:-|nuORF;ENST00000532388.5_1_8:70617264-70744908:-|nuORF;nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant	SLCO5A1|p.Y222Tfs*6|1|0.32|ENSG00000137571|chr8:69832011-69832011|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	417.252569	832.490584	-0.37475	-0.00015637	1.8168	0.00075808	1.4421	0.00060171	417.2531776019019	38.222	0.57596	38.003	37.792	38.368	-0.21848	0.031443	0.00012501	NaN	17.365	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1027500			48492	5138	33683	33735							0.06763864291656319
LSSVLAVLT	9	Unmodified	_LSSVLAVLT_					0	0	0			REV__ENSG00000131080|ENST00000374719|EDA2R	REV__ENSG00000131080|ENST00000374719|EDA2R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.78106689453125	2	451.781493	901.548434	-0.27273	-0.00012322	0.44184	0.00019961	0.16911	7.6399E-05	451.7815879956312	78.092	0.7418	78.108	77.78	78.522	0.015907					40	17	3	0	0	0	0.13494	1	9590	9590		102.77	1.5618	1	1124300	+		48493	23188	33684	33736	53849	53849					0.09372126217078858
LSSVTPPPPA	10	Unmodified	_LSSVTPPPPA_					0	0	0			REV__ENST00000464824.2_1_1:155034702-155034975:+|nuORF	REV__ENST00000464824.2_1_1:155034702-155034975:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.2685546875	2	483.26875	964.522947	-0.16559	-8.0023E-05	-0.52365	-0.00025306	-0.68923	-0.00033308	483.26849683747514	46.63	1.7265	46.369	45.815	47.542	-0.26118					131	46	5	0	0	0	1.1329	1	4530	4530		27.882	0	1	43900000	+		48494	24259	33685	33737	53850	53850					0.03926651694666816
LSSWDVVAD	9	Unmodified	_LSSWDVVAD_					0	0	0			REV__ENST00000374500.9_1_6:33385885-33386053:-|nuORF	REV__ENST00000374500.9_1_6:33385885-33386053:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	496.23846435546875	2	496.24019	990.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.512	1	31.27	30.77	31.77	-0.24109								0	0	0	0.56622	1	2102	2102		44.117	0	1		+		48495	31297	33686	33738	53851	53851					-0.029788155817186635
LSSYILWKF	9	Unmodified	_LSSYILWKF_					0	0	0			REV__ENST00000332995.11_1_6:13290073-13290187:+|nuORF	REV__ENST00000332995.11_1_6:13290073-13290187:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.7401733398438	2	578.823692	1155.63283	-1.0099	-0.00058453	3.5955	0.0020811	2.5856	0.0014966	578.8256700883264	35.213	0.62931	35	34.766	35.395	-0.21246					36	15	3	0	0	0	0.024457	1	2686	2686		29.15	0	1	818290	+		48496	30499	33687	33739	53852	53852					0.061240770338372386
LSTCVNPPL	9	Unmodified	_LSTCVNPPL_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2716064453125	2	472.249503	942.484453	0.22984	0.00010854	-0.80943	-0.00038225	-0.57959	-0.00027371	472.24738684976654	64.572	0.45306	64.617	64.372	64.825	0.045502					18	11	2	0	0	0	0.022832	1	7555	7555		62.107	1.1355	1	159840	+		48497	26688	33688	33740	53853	53853					0.010910227885005952
LSTDGRGSDC	10	Unmodified	_LSTDGRGSDC_					0	0	0			REV__ENST00000348261.10_1_16:1271144-1271678:+|nuORF	REV__ENST00000348261.10_1_16:1271144-1271678:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.714111328125	2	505.714013	1009.41347	-0.16385	-8.2861E-05	0.85868	0.00043424	0.69483	0.00035138	505.7142495519542	31.492	4.3224	31.251	29.658	33.98	-0.24109					222	105	3	0	0	0	1.1088	1	2101	2101		31.53	1.0262	1	1926200	+		48498	30711	33689	33741	53854	53854					-0.09085721986980388
LSTDKKKPP	9	Unmodified	_LSTDKKKPP_					0	0	0			REV__STMN3|p.N125Kfs*2|1|0.16|ENSG00000197457|chr20:63642216-63642217|-/T|frameshift_variant	REV__STMN3|p.N125Kfs*2|1|0.16|ENSG00000197457|chr20:63642216-63642217|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2984313964844	2	507.303124	1012.5917	-0.41957	-0.00021285	-1.2173	-0.00061755	-1.6369	-0.0008304	507.30226539646577	26.869	0.34396	26.701	26.379	26.723	-0.16816					12	7	2	0	0	0	0.024405	1	1423	1423		35.618	0	1	244550	+		48499	28306	33690	33742	53855	53855					0.08590315994376851
LSTEITQLA	9	Unmodified	_LSTEITQLA_					0	0	0			REV__ENSG00000160688|ENST00000292180|FLAD1	REV__ENSG00000160688|ENST00000292180|FLAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.784423828125	2	488.27149	974.528426	-0.47082	-0.00022989	-1.3752	-0.00067147	-1.846	-0.00090136	488.27041627210986	40.121	0.95322	40.008	39.568	40.521	-0.11222					33	25	2	0	0	0	0.023596	1	3566	3566		53.351	0	1	2669800	+		48500	25335	33691	33743	53856	53856					0.04014330486484141
LSTELAWL	8	Unmodified	_LSTELAWL_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7587890625	2	466.758018	931.501483	-0.64207	-0.00029969	0.77428	0.0003614	0.13221	6.171E-05	466.7582304980983	81.233	1.0411	81.102	80.741	81.783	-0.13075					54	25	3	0	0	0	0.71833	1	10097	10097		65.803	5.5092	1	1357100			48501	3417	33692	33744	53857	53857					0.032992666659424685
LSTELAWL	8	Unmodified	_LSTELAWL_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7583923339844	2	466.758018	931.501483	-0.074523	-3.4784E-05	0.13579	6.3382E-05	0.061269	2.8598E-05	466.75793899745094	81.082	1.002	81.106	80.735	81.737	0.023911					56	24	4	0	0	0	0.59392	1	10015	10015		76.847	4.9692	1	1579900			48502	3417	33692	33744	53858	53858					0.032992666659424685
LSTEWVVV	8	Unmodified	_LSTEWVVV_					0	0	0			REV__ENST00000440705.6_1_2:58358979-58359057:+|nuORF	REV__ENST00000440705.6_1_2:58358979-58359057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.75885009765625	2	466.758018	931.501483	-0.54693	-0.00025529	0.72521	0.0003385	0.17828	8.3214E-05	466.75821146551226	81.03	1.1629	81.03	80.707	81.869	0					61	28	4	0	0	0	0.43637	1	10092	10092		92.191	9.8856	1	1217100	+		48503	32531	33693	33745	53859	53859					0.03299266665953837
LSTEWVVV	8	Unmodified	_LSTEWVVV_					0	0	0			REV__ENST00000440705.6_1_2:58358979-58359057:+|nuORF	REV__ENST00000440705.6_1_2:58358979-58359057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7582702636719	2	466.758018	931.501483	-0.64207	-0.00029969	0.77428	0.0003614	0.13221	6.171E-05	466.7582304980983	81.233	1.0411	81.102	80.741	81.783	-0.13075					54	25	3	0	0	0	0.34196	1	10086	10086		105.27	19.909	1	1357100	+		48504	32531	33693	33745	53860	53860					0.03299266665953837
LSTEWVVV	8	Unmodified	_LSTEWVVV_					0	0	0			REV__ENST00000440705.6_1_2:58358979-58359057:+|nuORF	REV__ENST00000440705.6_1_2:58358979-58359057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7584533691406	2	466.758018	931.501483	-0.074523	-3.4784E-05	0.13579	6.3382E-05	0.061269	2.8598E-05	466.75793899745094	81.082	1.002	81.106	80.735	81.737	0.023911					56	24	4	0	0	0	0.68535	1	10027	10027		68.485	10.255	1	1579900	+		48505	32531	33693	33745	53861	53861					0.03299266665953837
LSTFRKHS	8	Unmodified	_LSTFRKHS_					0	0	0		ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2658386230469	2	488.272158	974.529764	-0.093508	-4.5657E-05	-4.3013	-0.0021002	-4.3948	-0.0021458	488.27004415007985	56.349	0.54951	56.125	55.916	56.465	-0.22372					16	13	2	0	0	0	0.027866	1	6100	6100		37.159	0	1	183690			48506	8350	33694	33746	53862	53862					0.04148009365906091
LSTFTLSTN	9	Unmodified	_LSTFTLSTN_					0	0	0			REV__ENSG00000143107|ENST00000370017|FNDC7	REV__ENSG00000143107|ENST00000370017|FNDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.242919921875	2	492.25584	982.497126	-0.067385	-3.3171E-05	-1.7596	-0.00086619	-1.827	-0.00089936	492.2548828550219	37.312	0.1068	37.249	37.198	37.305	-0.063385					4	2	2	0	0	0	0.024427	1	3026	3026		34.173	0	1	65336	+		48507	24200	33695	33747	53863	53863					0.0051775745238273885
LSTGKVGMLK	10	Unmodified	_LSTGKVGMLK_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-2|FSTL4;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.3060913085938	2	517.307352	1032.60015	0.11292	5.8417E-05	-4.1871	-0.002166	-4.0742	-0.0021076	517.3052361118528	60.027	1.6013	59.85	59.478	61.08	-0.1761					136	40	6	0	0	0	0.64538	1	6707	6707		71.877	1.0613	1	59576000			48508	1157	33696	33748	53864	53864					0.08515546639341665
LSTHGFLSN	9	Unmodified	_LSTHGFLSN_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;ENST00000515631.1_1_4:39230179-39233922:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2690734863281	2	488.248349	974.482145	-0.62098	-0.00030319	1.8841	0.0009199	1.2631	0.00061671	488.24912231358195	53.048	0.72488	53.143	52.868	53.592	0.095669					31	19	2	0	0	0	0.02435	1	5711	5711		42.396	8.2236	1	438370			48509	6622	33697	33749	53865	53865					-0.006116896249523052
LSTHGFLSN	9	Unmodified	_LSTHGFLSN_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;ENST00000515631.1_1_4:39230179-39233922:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.248349	974.482145	-0.27375	-0.00013366	1.4845	0.00072483	1.2108	0.00059117	488.24872961203727	53.182	0.75409	53.182	52.864	53.618	0	0.023546	-0.00024301	NaN	42.396	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366490			48510	6622	33697	33749							-0.006116896249523052
LSTHGFLSN	9	Unmodified	_LSTHGFLSN_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;ENST00000515631.1_1_4:39230179-39233922:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	488.248349	974.482145	-0.73528	-0.000359	1.7951	0.00087644	1.0598	0.00051744	488.2490282544136	53.298	0.69363	53.15	52.835	53.529	-0.14723	-0.0082102	6.0225E-05	NaN	42.396	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427950			48511	6622	33697	33749							-0.006116896249523052
LSTIGLLVFL	10	Unmodified	_LSTIGLLVFL_					0	0	0			REV__ENSG00000127954|ENST00000380079|STEAP4	REV__ENSG00000127954|ENST00000380079|STEAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.3271484375	2	538.341718	1074.66888	0.314	0.00016904	1.3026	0.00070123	1.6166	0.00087027	538.3422793640153	99.835	0.38488	99.699	99.334	99.719	-0.13526					11	8	2	0	0	0	0.03519	1	12375	12375		20.947	0	1	112500	+		48512	22955	33698	33750	53866	53866					0.13453534210702855
LSTKLFSR	8	Unmodified	_LSTKLFSR_					0	0	0			REV__ENST00000310389.5_1_5:175799516-175799663:+|nuORF	REV__ENST00000310389.5_1_5:175799516-175799663:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	476.28570556640625	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102	1	102	101.5	102.5	0								0	0	0	0.7608	1	13065	13065		37.159	5.2042	1		+		48513	30181	33699	33751	53867	53867					0.07766064168481535
LSTKTSLLN	9	Unmodified	_LSTKTSLLN_					0	0	0		ENST00000422732.2_10:47098053-47098326:-|nuORF	ENST00000422732.2_10:47098053-47098326:-|nuORF	ENST00000422732.2_10:47098053-47098326:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.75250244140625	2	488.787307	975.560061	-0.94989	-0.00046429	1.4082	0.00068831	0.45831	0.00022402	488.7879975669432	28.47	1.2991	28.47	27.924	29.223	0					45	31	2	0	0	0	0.024288	1	1754	1754		44.377	7.2181	1	389730			48514	14013	33700	33752	53868	53868					0.0713032324043752
LSTLFLTT	8	Unmodified	_LSTLFLTT_					0	0	0			REV__ENST00000570646.5_1_16:4526085-4526253:+|nuORF	REV__ENST00000570646.5_1_16:4526085-4526253:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2590026855469	2	448.260394	894.506234	0.41659	0.00018674	-3.5356	-0.0015849	-3.119	-0.0013981	448.25867764123615	89.029	1.3807	89.029	88.555	89.936	0					85	32	4	0	0	0	0.97924	1	11223	11223		40.573	3.4135	1	7392500	+		48515	35393	33701	33753	53869	53869					0.05476150808692637
LSTLGCLLLL	10	Unmodified	_LSTLGCLLLL_					0	0	0			REV__ENST00000546153.1_1_12:10339004-10342736:+|nuORF	REV__ENST00000546153.1_1_12:10339004-10342736:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.299560546875	2	523.319928	1044.6253	-0.60224	-0.00031517	3.8572	0.0020185	3.2549	0.0017034	523.3210971959189	76.546	0.6492	76.546	76.15	76.799	0					26	15	3	0	0	0	0.03519	1	9416	9416		60.972	13.056	1	265660	+		48516	25918	33702	33754	53870	53870					0.10477601441925799
LSTLGLVIMA	10	Unmodified	_LSTLGLVIMA_					0	0	0		ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	ENSG00000237649|ENST00000428849|KIFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.30596923828125	2	509.304278	1016.594	-1.0243	-0.0005217	4.4212	0.0022517	3.3968	0.00173	509.306410243242	91.78	1.6681	91.78	91.383	93.051	0					111	39	5	0	0	0	0.941	1	11618	11618		51.335	8.9393	1	3058500			48517	10750	33703	33755	53871	53871					0.08637028407815706
LSTLKPSTP	9	Unmodified	_LSTLKPSTP_					0	0	0		ENST00000602224.5_1_19:35820091-35823560:+|nuORF	ENST00000602224.5_1_19:35820091-35823560:+|nuORF	ENST00000602224.5_1_19:35820091-35823560:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7537536621094	2	472.276575	942.538597	-0.37071	-0.00017508	4.2375	0.0020013	3.8668	0.0018262	472.27742217725586	39.754	0.62886	39.778	39.385	40.014	0.023727					31	17	3	0	0	0	0.024288	1	3362	3362		29.17	0	1	1051100			48518	17522	33704	33756	53872	53872					0.06502938211713172
LSTLKSLLVS	10	Unmodified	_LSTLKSLLVS_					0	0	0		ENST00000444300.1_1_15:89074596-89074887:-|nuORF	ENST00000444300.1_1_15:89074596-89074887:-|nuORF	ENST00000444300.1_1_15:89074596-89074887:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.31298828125	2	530.834257	1059.65396	-0.61711	-0.00032758	1.0588	0.00056207	0.44174	0.00023449	530.8348438049458	64.763	0.43355	64.529	64.334	64.768	-0.2345					18	10	2	0	0	0	0.03519	1	7383	7383		23.523	0	1	121370			48519	14416	33705	33757	53873	53873					0.1265204234268822
LSTLKVMPL	9	Unmodified	_LSTLKVMPL_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2875671386719	2	501.306821	1000.59909	-0.29647	-0.00014862	-3.5543	-0.0017818	-3.8508	-0.0019304	501.3049057398023	87.175	0.79858	87.038	86.787	87.586	-0.13734					37	18	3	0	0	0	0.023837	1	10587	10587		74.255	4.6274	1	370680			48520	2989	33706	33758	53874	53874					0.09881332270435905
LSTLSKNIL	9	Unmodified	_LSTLSKNIL_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.8066711425781	2	494.8055	987.596446	0.33615	0.00016633	-0.90806	-0.00044931	-0.57191	-0.00028298	494.8049108362055	81.99	1.1587	81.88	81.523	82.682	-0.11006					73	27	4	0	0	0	0.59099	1	10194	10194		53.351	0	1	1738300			48521	6575	33707	33759	53875	53875					0.10215200137145075
LSTLTIFR	8	Unmodified	_LSTLTIFR_					0	0	0		ENST00000510398.1_1_4:5141502-5170068:+|nuORF	ENST00000510398.1_1_4:5141502-5170068:+|nuORF	ENST00000510398.1_1_4:5141502-5170068:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.78704833984375	2	475.78711	949.559667	0.36201	0.00017224	-0.46926	-0.00022327	-0.10725	-5.1028E-05	475.7868325295316	85.757	1.4476	85.619	84.908	86.356	-0.13752					87	33	4	0	0	0	0.91239	1	10381	10381		50.025	9.4519	1	4488600			48522	15821	33708	33760	53876	53876					0.08286948311229025
LSTLYQRYKNL	11	Unmodified	_LSTLYQRYKNL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.9280700683594	3	466.92951	1397.7667	0.72478	0.00033842	-3.929	-0.0018346	-3.2042	-0.0014961	466.92766220491063	23.971	0.85898	24.047	23.778	24.637	0.076241					53	18	4	0	0	0	0.97516	1	947	947		42.338	2.2799	1	1897000	+		48523	28058	33709	33761	53877	53877					0.08372691068757376
LSTLYQRYKNL	11	Unmodified	_LSTLYQRYKNL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	466.92951	1397.7667	-0.51716	-0.00024148	-2.7994	-0.0013071	-3.3166	-0.0015486	466.9282451536479	24.057	0.78349	24.057	23.78	24.563	0	0.014684	0.00060523	NaN	42.338	54	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2190600	+		48524	28058	33709	33761							0.08372691068757376
LSTLYQRYKNL	11	Unmodified	_LSTLYQRYKNL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	466.92951	1397.7667	-0.74627	-0.00034846	-2.6209	-0.0012238	-3.3672	-0.0015722	466.92828320915055	24.071	0.79185	24.024	23.741	24.533	-0.047148	-0.019136	0.00085525	NaN	42.338	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1930600	+		48525	28058	33709	33761							0.08372691068757376
LSTLYQRYKNL	11	Unmodified	_LSTLYQRYKNL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	466.92951	1397.7667	0.72478	0.00033842	-3.929	-0.0018346	-3.2042	-0.0014961	466.92766220491063	23.971	0.85898	24.047	23.778	24.637	0.076241	0.0044521	-0.00097707	NaN	42.338	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1897000	+		48526	28058	33709	33761							0.08372691068757376
LSTNLHLE	8	Unmodified	_LSTNLHLE_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENST00000476908.1_1_1:114948024-114949565:-|nuORF	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7505798339844	2	463.750724	925.486896	-0.25313	-0.00011739	0.21696	0.00010061	-0.036173	-1.6775E-05	463.75081717597857	49.834	1.101	49.834	49.508	50.609	0					92	31	5	0	0	0	0.845	1	5192	5192		55.504	0	1	11037000			48527	9982	33710	33762	53878	53878					0.02117194517813914
LSTPALMPM	9	Unmodified	_LSTPALMPM_					0	0	0		nc|ENSG00000169031|Q01955-2|COL4A3;ENSG00000169031|ENST00000396578|COL4A3	nc|ENSG00000169031|Q01955-2|COL4A3	nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7505187988281	2	480.748282	959.48201	-0.41903	-0.00020145	4.1118	0.0019768	3.6928	0.0017753	480.7502303488981	32.86	4.2442	32.867	31.252	35.496	0.0066223					283	110	4	0	0	0	0.33184	1	2349	2349		71.378	1.7503	1	7899400			48528	7893	33711	33763	53879	53879					0.000648510591872764
LSTPNQSPL	9	Unmodified	_LSTPNQSPL_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7437744140625	2	478.756007	955.497461	-0.30765	-0.00014729	0.19786	9.4726E-05	-0.10979	-5.2565E-05	478.7558707145428	29.915	0.20498	29.924	29.797	30.002	0.0086689					6	4	2	0	0	0	0.019502	1	1862	1862		66.429	0	1	37635			48529	7940	33712	33764	53880	53880					0.01793177172248761
LSTPPKIL	8	Unmodified	_LSTPPKIL_					0	0	0		ENSG00000107185|ENST00000378078|RGP1;ENST00000496906.1_1_9:35749376-35750743:+|nuORF	ENSG00000107185|ENST00000378078|RGP1	ENSG00000107185|ENST00000378078|RGP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7801208496094	2	434.778754	867.542954	0.1037	4.5087E-05	2.9814	0.0012963	3.0851	0.0013413	434.7799173070872	42.423	1.5544	42.193	41.354	42.908	-0.23029					129	41	4	0	0	0	0.93274	1	3808	3808		47.916	3.3845	1	3875500			48530	2830	33713	33765	53881	53881					0.10388447425293634
LSTPQILP	8	Unmodified	_LSTPQILP_					0	0	0		FUBP1-USP33|2|fusion;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33;FUBP1-USP33|4|fusion;FUBP1-USP33|3|fusion;nc|ENSG00000077254|Q8TEY7-3|USP33;FUBP1-USP33|5|fusion	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.2513427734375	2	434.760561	867.506569	-0.058892	-2.5604E-05	-3.6549	-0.001589	-3.7137	-0.0016146	434.75892909929644	92.392	0.99509	92.27	91.717	92.712	-0.12242					26	23	2	0	0	0	0.027866	1	11347	11347		23.042	6.5693	1	77206			48531	17664	33714	33766	53882	53882					0.06751570528570028
LSTPSMKNIV	10	Unmodified	_LSTPSMKNIV_					0	0	0			REV__ENSG00000198130|ENST00000359678|HIBCH	REV__ENSG00000198130|ENST00000359678|HIBCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.8214111328125	2	545.302267	1088.58998	0.9801	0.00053445	-2.8704	-0.0015653	-1.8903	-0.0010308	545.3011600838652	98.564	0.39481	98.44	98.241	98.635	-0.12413					14	8	2	0	0	0	0.03519	1	12221	12221		39.253	6.4404	1	49793	+		48532	28387	33715	33767	53883	53883					0.049229389141146385
LSTQDSVIY	9	Unmodified	_LSTQDSVIY_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1;DCHS1|p.L732Tfs*6|1|0.24|ENSG00000166341|chr11:6633814-6633815|-/G|frameshift_variant	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7745361328125	2	513.261122	1024.50769	-0.644	-0.00033054	-2.8193	-0.001447	-3.4633	-0.0017776	513.7600052520974	48.107	0.14988	47.831	47.701	47.851	-0.27598					5	3	2	0	0	0	0.024427	1	4732	4732		19.997	0	1	59420			48533	7543	33716	33768	53884	53884					-0.003582598931643588
LSTQRSLPA	9	Unmodified	_LSTQRSLPA_					0	0	0		ENST00000609041.1_1_20:60581499-60581991:-|nuORF	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7432861328125	2	486.777274	971.539994	0.06397	3.1139E-05	-0.95945	-0.00046704	-0.89548	-0.0004359	486.7767677982205	41.592	1.1313	41.592	41.258	42.389	0					97	32	5	0	0	0	0.023596	1	3776	3776		63.306	7.8021	1	17130000			48534	17600	33717	33769	53885	53885					0.05308572300475589
LSTRESTL	8	Unmodified	_LSTRESTL_					0	0	0		ENST00000396161.9_2_19:58131980-58132310:+|nuORF;ENST00000343280.8_1_19:57984577-57985306:-|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.7483825683594	2	453.748182	905.481811	-0.626	-0.00028404	-0.39317	-0.0001784	-1.0192	-0.00046244	453.74833396698807	43.105	0.71208	42.879	42.597	43.31	-0.22597					45	18	5	0	0	0	0.35998	1	3911	3911		102.77	1.1726	1	1633200			48535	13545	33718	33770	53886	53886					0.025288906552077606
LSTRPLQDL	9	Unmodified	_LSTRPLQDL_					0	0	0		ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	ENST00000571632.5_1_17:7838298-7849136:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7957763671875	2	521.798206	1041.58186	-1.2498	-0.00065215	-0.74677	-0.00038966	-1.9966	-0.0010418	521.7977152726995	62.053	0.52545	62.116	61.876	62.401	0.062767					26	14	2	0	0	0	0.5973	1	7153	7153		52.937	0	1	3739600			48536	17040	33719	33771	53887	53887					0.06273127989015848
LSTSLRAGVPS	11	Unmodified	_LSTSLRAGVPS_					0	0	0			REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3092651367188	2	544.308938	1086.60332	0.097958	5.3319E-05	2.8289	0.0015398	2.9268	0.0015931	544.3101193461321	68.894	1.1418	68.651	68.39	69.532	-0.24277					51	27	3	0	0	0	0.6477	1	7991	7991		66.92	3.3864	1	1850200	+		48537	32016	33720	33772	53888	53888					0.06348513017701407
LSTSLRAGVPS	11	Unmodified	_LSTSLRAGVPS_					0	0	0			REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	544.308938	1086.60332	-0.83293	-0.00045337	3.8488	0.0020949	3.0159	0.0016416	544.3108195441495	68.662	0.49329	68.662	68.444	68.938	0	-0.011971	0.00042267	NaN	66.92	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1138400	+		48538	32016	33720	33772							0.06348513017701407
LSTSLRAGVPS	11	Unmodified	_LSTSLRAGVPS_					0	0	0			REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.308938	1086.60332	-0.41159	-0.00022403	3.5359	0.0019246	3.1243	0.0017006	544.3105543502198	68.986	0.5703	68.693	68.48	69.051	-0.29267	0.019189	8.2061E-05	NaN	66.92	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037000	+		48539	32016	33720	33772							0.06348513017701407
LSTSLRAGVPS	11	Unmodified	_LSTSLRAGVPS_					0	0	0			REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.308938	1086.60332	-0.6765	-0.00036823	3.7939	0.0020651	3.1174	0.0016968	544.310731019988	68.714	0.48157	68.73	68.533	69.015	0.01635	0.056719	0.00036291	NaN	66.92	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	871770	+		48540	32016	33720	33772							0.06348513017701407
LSTSLRAGVPS	11	Unmodified	_LSTSLRAGVPS_					0	0	0			REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	544.308938	1086.60332	0.097958	5.3319E-05	2.8289	0.0015398	2.9268	0.0015931	544.3101193461321	68.894	1.1418	68.651	68.39	69.532	-0.24277	-0.02235	-0.00068762	NaN	66.92	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1850200	+		48541	32016	33720	33772							0.06348513017701407
LSTSLSPLLY	10	Unmodified	_LSTSLSPLLY_					0	0	0		LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|40|3|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|40|3|anti-sense	LTR1_dup85|chr7:101629186-101629993:-|3.073220126515208|0.0003248618387484|13.21|521.0|40|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3109130859375	2	547.310615	1092.60668	-0.092686	-5.0728E-05	-0.51296	-0.00028075	-0.60564	-0.00033147	547.3102698258109	63.806	1.028	63.548	63.239	64.267	-0.25824					98	26	6	0	0	0	0.47726	2	7239	7192;7239		90.777	0	1	15460000			48542	17931	33721	33773	53889;53890	53890					0.06407763071729278
LSTSPITET	9	Unmodified	_LSTSPITET_					0	0	0			REV__nc|ENSG00000080644|P32297-3|CHRNA3	REV__nc|ENSG00000080644|P32297-3|CHRNA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.75799560546875	2	474.747847	947.481142	-0.794	-0.00037695	-2.8336	-0.0013452	-3.6276	-0.0017222	474.7451333192692	82.335	0.60901	82.195	81.956	82.565	-0.14014					23	13	2	0	0	0	0.023355	1	9949	9949		45.952	0	1	193400	+		48543	20660	33722	33774	53891	53891					0.005300512154803982
LSTVHTHSSV	10	Unmodified	_LSTVHTHSSV_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2;nc|ENSG00000106305|Q13155-2|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3181762695312	2	534.277638	1066.54072	-0.34959	-0.00018678	0.96039	0.00051311	0.61079	0.00032633	534.2780447856468	33.704	0.59817	33.473	33.075	33.673	-0.23107					28	14	3	0	0	0	0.03519	1	2425	2425		56.721	0	1	389430			48544	2776	33723	33775	53892	53892					0.010113669495240174
LSTVIKGAPS	10	Unmodified	_LSTVIKGAPS_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7896423339844	2	486.78985	971.565146	-0.77397	-0.00037676	0.90984	0.0004429	0.13587	6.614E-05	486.79024300914745	54.842	0.7453	54.94	54.626	55.371	0.098015					49	20	3	0	0	0	0.45418	1	5947	5947		93.143	2.5424	1	8102700	+		48545	20429	33724	33776	53893	53893					0.07822627103053037
LSTVTNQLA	9	Unmodified	_LSTVTNQLA_					0	0	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7784729003906	2	473.763832	945.513111	-0.15892	-7.5291E-05	0.30641	0.00014517	0.14749	6.9874E-05	473.7640453935046	23.215	0.53857	23.292	22.98	23.518	0.076241					21	12	2	0	0	0	0.024292	1	820	820		58.782	0	1	203860	+		48546	26713	33725	33777	53894	53894					0.03817463689267697
LSTYHTAN	8	Unmodified	_LSTYHTAN_					0	0	0		ENST00000395319.7_1_17:26900147-26900246:-|nuORF	ENST00000395319.7_1_17:26900147-26900246:-|nuORF	ENST00000395319.7_1_17:26900147-26900246:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.7742919921875	2	453.719424	905.424296	-0.60828	-0.00027599	0.91096	0.00041332	0.30268	0.00013733	453.719691784165	29.436	0.97828	29.263	28.893	29.872	-0.17258					34	22	2	0	0	0	0.027866	1	1860	1860		31.955	0	1	103280			48547	13512	33726	33778	53895	53895					-0.03219951550397582
LSVAAGDKEEG	11	Unmodified	_LSVAAGDKEEG_					0	0	0			REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.263916015625	2	538.266936	1074.51932	-1.2411	-0.00066802	-4.2407	-0.0022826	-5.4817	-0.0029506	538.2645153630465	60.554	1.1269	60.378	60.037	61.164	-0.1761					58	27	4	0	0	0	0.12713	1	6750	6750		106.68	24.378	1	2703600	+		48548	37138	33727	33779	53896	53896					-0.01496062869864545
LSVAAGDKEEG	11	Unmodified	_LSVAAGDKEEG_					0	0	0			REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	REV__nc|ENSG00000225855|Q66K80-2|RUSC1-AS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2640991210938	2	538.266936	1074.51932	-1.4999	-0.00080733	-4.1256	-0.0022207	-5.6255	-0.003028	538.2645257203208	60.802	1.0513	60.548	60.253	61.304	-0.25373					61	25	4	0	0	0	0.28368	1	6757	6757		90.601	10.888	1	2340900	+		48549	37138	33727	33779	53897	53897					-0.01496062869864545
LSVAARGAFAT	11	Unmodified	_LSVAARGAFAT_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;TTC17|p.R392Tfs*11|1|0.1|ENSG00000052841|chr11:43400003-43400004|-/CATTTTTTAATACCAG|frameshift_variant;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3128662109375	2	532.298373	1062.58219	-0.79204	-0.0004216	0.49929	0.00026577	-0.29275	-0.00015583	532.2985390945817	35.784	0.70949	35.579	35.346	36.056	-0.20518					24	11	3	0	0	0	0.024739	1	2731	2731		42.338	8.1655	1	1395400			48550	1156	33728	33780	53898	53898					0.053405477088290354
LSVAEMVAL	9	Unmodified	_LSVAEMVAL_					0	0	0		FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant;ENSG00000177051|ENST00000317683|FBXO46	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.75830078125	2	466.759704	931.504854	-0.54693	-0.00025529	-2.8857	-0.0013469	-3.4326	-0.0016022	466.75821146551226	81.03	1.1629	81.03	80.707	81.869	0					61	28	4	0	0	0	0.31247	1	10104	10104		73.975	2.5968	1	1217100			48551	8701	33729	33781	53899	53899					0.03636193448301128
LSVAIIES	8	Unmodified	_LSVAIIES_					0	0	0			REV__ENST00000469770.1_1_7:87053185-87060788:-|nuORF	REV__ENST00000469770.1_1_7:87053185-87060788:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2457580566406	2	416.244744	830.474934	-0.56226	-0.00023404	2.3649	0.00098437	1.8026	0.00075033	416.2455567742371	28.658	0.72286	28.489	28.131	28.854	-0.16897					46	16	4	0	0	0	0.91239	1	1697	1697		50.025	2.1089	1	1102700	+		48552	33135	33730	33782	53900	53900					0.052915777746079584
LSVAIIES	8	Unmodified	_LSVAIIES_					0	0	0			REV__ENST00000469770.1_1_7:87053185-87060788:-|nuORF	REV__ENST00000469770.1_1_7:87053185-87060788:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2460021972656	2	416.244744	830.474934	-0.23728	-9.8766E-05	2.0076	0.00083564	1.7703	0.00073687	416.2454218771637	28.701	0.71095	28.549	28.243	28.954	-0.15195					43	16	5	0	0	0	0.78609	2	1672	1672;1685		60.294	2.4827	1	1481600	+		48553	33135	33730	33782	53901;53902	53901					0.052915777746079584
LSVAKFLNTP	10	Unmodified	_LSVAKFLNTP_					0	0	0			REV__ENSG00000121871|ENST00000475390|SLITRK3	REV__ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.316650390625	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.96069	1	10895	10895		50.034	2.074	1	3635800	+		48554	22612	33731	33783	53903	53903					0.08222889028479585
LSVALLLPK	9	Unmodified	_LSVALLLPK_					0	0	0			REV__ENSG00000160349|ENST00000371781|LCN1	REV__ENSG00000160349|ENST00000371781|LCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.8076171875	2	477.323328	952.632104	0.31127	0.00014857	-0.56369	-0.00026906	-0.25243	-0.00012049	477.3230194186922	102.46	0.46986	102.29	102.17	102.64	-0.17178					14	10	2	0	0	0	0.024523	1	12737	12737		10.265	0	1	41763	+		48555	25315	33732	33784	53904	53904					0.15389282384785474
LSVAQEPE	8	Unmodified	_LSVAQEPE_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7552185058594	2	436.721633	871.428712	-0.49598	-0.00021661	2.7993	0.0012225	2.3033	0.0010059	436.7225716796546	22.769	0.50786	22.584	22.369	22.877	-0.18539					14	10	2	0	0	0	0.027866	1	850	850		60.972	15.02	1	24942			48556	2688	33733	33785	53905	53905					-0.01214487127481334
LSVAVEHA	8	Unmodified	_LSVAVEHA_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.5220031738281	2	413.226885	824.439217	1.8256	0.0007544	-0.9946	-0.000411	0.83104	0.00034341	413.2263088557803	36.976	1.0882	36.976	36.508	37.596	0					59	28	4	0	0	0	0.027866	1	2979	2979		31.955	0	1	1252400	+		48557	27773	33734	33786	53906	53906					0.019975403176090367
LSVAVFPLW	9	Unmodified	_LSVAVFPLW_					0	0	0			REV__nc|ENSG00000290699|Q9H0H9|CYP4F30P	REV__nc|ENSG00000290699|Q9H0H9|CYP4F30P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.3135986328125	2	516.299853	1030.58515	1.2574	0.00064922	-2.3926	-0.0012353	-1.1351	-0.00058606	516.2986127943334	98.094	0.1795	97.97	97.849	98.028	-0.12413					5	4	2	0	0	0	0.024412	1	12154	12154		31.955	0	1	85799	+		48558	37232	33735	33787	53907	53907					0.07108422833653094
LSVAVVGY	8	Unmodified	_LSVAVVGY_					0	0	0		ENST00000424746.1_1_22:41184916-41185198:-|nuORF	ENST00000424746.1_1_22:41184916-41185198:-|nuORF	ENST00000424746.1_1_22:41184916-41185198:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2330017089844	2	404.234179	806.453805	0.2566	0.00010373	-4.2648	-0.001724	-4.0082	-0.0016203	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0572	1	10218	10218		28.254	6.5519	1	12775000			48559	14050	33736	33788	53908	53908					0.04283612465758324
LSVDAFHVKL	10	Unmodified	_LSVDAFHVKL_					0	0	0			REV__ENST00000375571.5_1_20:31436579-31436699:+|nuORF	REV__ENST00000375571.5_1_20:31436579-31436699:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.3526611328125	2	564.824224	1127.63389	-0.10388	-5.8673E-05	-0.30746	-0.00017366	-0.41134	-0.00023234	564.8227259528849	87.31	0.92429	87.132	86.524	87.448	-0.17875					25	21	2	0	0	0	0.03519	1	10558	10558		36.447	1.2947	1	88301	+		48560	31328	33737	33789	53909	53909					0.07518291402743671
LSVDEVCKI	9	Unmodified	_LSVDEVCKI_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.3050537109375	2	503.267893	1004.52123	-0.15502	-7.8017E-05	1.3422	0.00067551	1.1872	0.00059749	503.2685042193954	67.662	1.6559	67.374	66.791	68.447	-0.28835					111	41	5	0	0	0	0.022083	1	8178	8178		76.774	2.5191	1	4893300	+		48561	37044	33738	33790	53910	53910					0.019152746143845434
LSVDEVCKI	9	Unmodified	_LSVDEVCKI_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.267893	1004.52123	-0.081577	-4.1055E-05	2.7116	0.0013646	2.63	0.0013236	503.2697521040681	67.745	1.6969	67.512	66.66	68.357	-0.23375	0.06734	0.0013488	NaN	76.774	100	42	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2267800	+		48562	37044	33738	33790							0.019152746143845434
LSVDEVCKI	9	Unmodified	_LSVDEVCKI_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.267893	1004.52123	-0.36582	-0.00018411	1.8385	0.00092527	1.4727	0.00074116	503.26903446971005	67.718	1.0692	67.479	67.118	68.187	-0.23814	0.035226	0.00047003	NaN	76.774	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2312300	+		48563	37044	33738	33790							0.019152746143845434
LSVDLPLAH	9	Unmodified	_LSVDLPLAH_					0	0	0		ENST00000234831.9_2_1:54518673-54518721:-|nuORF	ENST00000234831.9_2_1:54518673-54518721:-|nuORF	ENST00000234831.9_2_1:54518673-54518721:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2853088378906	2	482.776742	963.538931	-0.15761	-7.6089E-05	-2.4531	-0.0011843	-2.6107	-0.0012604	482.776940806537	54.918	0.69029	54.687	54.565	55.255	-0.23087					41	19	4	0	0	0	0.024	1	5862	5862		45.952	0	1	676480			48564	11252	33739	33791	53911	53911					0.05570357931549097
LSVDRITLY	9	Unmodified	_LSVDRITLY_					0	0	0			REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7965087890625	2	540.308406	1078.60226	0.37802	0.00020424	3.8058	0.0020563	4.1838	0.0022605	540.3103133948114	77.211	0.48161	76.968	76.665	77.147	-0.24288					20	12	2	0	0	0	0.024307	1	9204	9204		63.534	27.916	1	486510	+		48565	23526	33740	33792	53912	53912					0.0661029864882039
LSVELGTEV	9	Unmodified	_LSVELGTEV_					0	0	0			REV__ENSG00000233436|ENST00000422652|BTBD18	REV__ENSG00000233436|ENST00000422652|BTBD18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.75799560546875	2	473.758215	945.501877	-0.57184	-0.00027091	0.5951	0.00028193	0.023256	1.1018E-05	473.758466690893	82.687	1.1226	82.547	82.216	83.339	-0.14014					56	25	5	0	0	0	0.43973	1	9949	9949		63.306	0.32785	1	1183700	+		48566	28907	33741	33793	53913	53913					0.026946415951556446
LSVELLAIF	9	Unmodified	_LSVELLAIF_					0	0	0			REV__ENST00000494261.1_1_3:33580324-33580402:-|nuORF	REV__ENST00000494261.1_1_3:33580324-33580402:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7790832519531	2	502.804968	1003.59538	-1.0546	-0.00053028	-2.5762	-0.0012953	-3.6308	-0.0018256	502.80362808329136	24.114	0.39527	24.066	23.913	24.308	-0.047148					12	8	2	0	0	0	0.024466	1	1001	1001		33.516	6.7195	1	26801	+		48567	33778	33742	33794	53914	53914					0.09372985768231956
LSVEPGYPR	9	Unmodified	_LSVEPGYPR_					0	0	0		ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2943420410156	2	509.271824	1016.5291	1.584	0.00080667	2.5314	0.0012892	4.1154	0.0020959	509.27271334796905	63.673	0.46384	63.727	63.519	63.983	0.054104					17	12	2	0	0	0	0.021513	1	7369	7369		93.195	2.8256	1	89535			48568	4167	33743	33795	53915	53915					0.021491699261900976
LSVFKGLVK	9	Unmodified	_LSVFKGLVK_					0	0	0			REV__nc|ENSG00000198848|P23141-3|CES1;REV__ENST00000574030.5_2_16:55794553-55801328:+|nuORF	REV__nc|ENSG00000198848|P23141-3|CES1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.25103759765625	2	495.820953	989.627353	-0.2641	-0.00013094	0.53566	0.00026559	0.27156	0.00013464	495.82104705798605	61.163	0.62923	60.95	60.682	61.311	-0.21339					36	16	3	0	0	0	0.024405	1	7070	7070		20.947	4.4738	1	532560	+		48569	28498;35441	33744	33796	53916	53916					0.13212398242046675
LSVFLFTHTG	10	Unmodified	_LSVFLFTHTG_					0	0	0		ENST00000449821.1_1_20:36641299-36641335:-|nuORF	ENST00000449821.1_1_20:36641299-36641335:-|nuORF	ENST00000449821.1_1_20:36641299-36641335:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2789916992188	2	561.303124	1120.5917	0.36268	0.00020357	4.3168	0.002423	4.6795	0.0026266	561.8073944056979	84.914	0.21442	84.71	84.544	84.759	-0.20329					5	4	2	0	0	0	0.03519	1	10247	10247		27.882	0	1	176670			48570	14505	33745	33797	53917	53917					0.036223159943801875
LSVFLGSGTQ	10	Unmodified	_LSVFLGSGTQ_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2;TM9SF2|p.H500Qfs*43|1|0.22|ENSG00000125304|chr13:99554313-99554316|CACC/-|frameshift_variant	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.76513671875	2	504.771657	1007.52876	-0.73505	-0.00037103	0.47742	0.00024099	-0.25762	-0.00013004	504.7716136395148	80.414	0.62886	80.435	80.104	80.733	0.021446					22	13	2	0	0	0	0.03519	1	9880	9880		31.53	0	1	547720			48571	4094	33746	33798	53918	53918					0.025297502063381216
LSVFYKYD	8	Unmodified	_LSVFYKYD_					0	0	0			REV__ENST00000478601.1_1_3:122478069-122496706:-|nuORF	REV__ENST00000478601.1_1_3:122478069-122496706:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7046508789062	2	517.7633	1033.51205	-1.1351	-0.00058773	0.91603	0.00047429	-0.2191	-0.00011344	517.7634573453091	33.727	0.51545	33.552	33.226	33.742	-0.17557					18	12	2	0	0	0	0.027866	1	2436	2436		55.504	9.5523	1	72002	+		48572	26318	33747	33799	53919	53919					-0.0033675067961667082
LSVGIKQPIG	10	Unmodified	_LSVGIKQPIG_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.3146667480469	2	506.313492	1010.61243	0.23522	0.0001191	4.1665	0.0021095	4.4017	0.0022286	506.3155592171905	104.24	0.4592	104.11	103.87	104.33	-0.12561					20	12	2	0	0	0	1.089	1	12976	12976		34.173	0	1	40066			48573	7498	33748	33800	53920	53920					0.10754906374040729
LSVGIKQPIG	10	Unmodified	_LSVGIKQPIG_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.313492	1010.61243	-0.15182	-7.6869E-05	3.9775	0.0020138	3.8257	0.001937	506.3154256064393	104.35	0.53257	104.35	104.07	104.6	0	0.071822	3.3534E-05	NaN	34.173	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50372			48574	7498	33748	33800							0.10754906374040729
LSVGIKQPIG	10	Unmodified	_LSVGIKQPIG_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.313492	1010.61243	-0.10195	-5.1618E-05	4.3538	0.0022044	4.2518	0.0021528	506.31561662790307	104.32	0.35313	104.32	104.19	104.55	0.0031357	0.037628	0.0004146	NaN	34.173	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45051			48575	7498	33748	33800							0.10754906374040729
LSVGIKQPIG	10	Unmodified	_LSVGIKQPIG_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.313492	1010.61243	0.15987	8.0944E-05	3.6007	0.0018231	3.7606	0.001904	506.31534334964726	104.47	0.34334	104.47	104.21	104.55	-0.0025864	0.18499	-0.00034799	NaN	34.173	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54406			48576	7498	33748	33800							0.10754906374040729
LSVGIKQPIG	10	Unmodified	_LSVGIKQPIG_					0	0	0		ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	ENSG00000166035|ENST00000299022|LIPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.313492	1010.61243	0.19053	9.647E-05	3.5518	0.0017983	3.7423	0.0018948	506.3153996727889	104.32	0.3608	104.16	103.94	104.3	-0.16791	-0.12673	-0.00039756	NaN	34.173	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42911			48577	7498	33748	33800							0.10754906374040729
LSVGSVTVW	9	Unmodified	_LSVGSVTVW_					0	0	0		ENST00000494257.1_1_1:3407490-3409358:-|nuORF;ENST00000294599.8_1_1:3407490-3411287:-|nuORF;ENST00000356575.8_1_1:3407490-3411251:-|nuORF	ENST00000494257.1_1_1:3407490-3409358:-|nuORF	ENST00000494257.1_1_1:3407490-3409358:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.2638854980469	2	474.263468	946.512382	0.66579	0.00031576	-0.40764	-0.00019333	0.25814	0.00012243	474.2631458221152	78.044	0.8884	77.802	77.49	78.378	-0.24232					57	20	4	0	0	0	0.33245	1	9330	9330		71.296	0	1	2004700			48578	11818	33749	33801	53921	53921					0.03698669040227287
LSVGSVTVW	9	Unmodified	_LSVGSVTVW_					0	0	0		ENST00000494257.1_1_1:3407490-3409358:-|nuORF;ENST00000294599.8_1_1:3407490-3411287:-|nuORF;ENST00000356575.8_1_1:3407490-3411251:-|nuORF	ENST00000494257.1_1_1:3407490-3409358:-|nuORF	ENST00000494257.1_1_1:3407490-3409358:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.2635803222656	2	474.263468	946.512382	-0.18339	-8.6977E-05	0.24117	0.00011438	0.05778	2.7403E-05	474.2634767071058	77.933	0.80727	77.772	77.527	78.334	-0.16196					56	18	4	0	0	0	0.33245	1	9271	9271		71.296	15.791	1	2001900			48579	11818	33749	33801	53922	53922					0.03698669040227287
LSVIQTGNL	9	Unmodified	_LSVIQTGNL_					0	0	0		ENST00000360416.7_1_17:8378590-8378773:-|nuORF	ENST00000360416.7_1_17:8378590-8378773:-|nuORF	ENST00000360416.7_1_17:8378590-8378773:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7765808105469	2	472.7742	943.533846	0.37631	0.00017791	4.3337	0.0020488	4.71	0.0022268	472.7760629626344	79.193	2.2086	79.193	78.122	80.331	0					110	52	3	0	0	0	0.70156	1	9874	9874		45.972	1.5951	1	1289400			48580	12767	33750	33802	53923	53923					0.059820540689429436
LSVKGRPRPSP	11	Unmodified	_LSVKGRPRPSP_					0	0	0		nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-2|INF2	nc|ENSG00000203485|Q27J81-2|INF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.35888671875	2	597.359296	1192.70404	-0.034733	-2.0748E-05	-1.2427	-0.00074237	-1.2775	-0.00076311	597.3583204343577	98.637	1.8036	98.633	98.096	99.899	-0.0038834					117	41	4	0	0	0	1.0392	1	12498	12498		28.081	6.1216	1	2975900			48581	10270	33751	33803	53924	53924					0.11539589791209437
LSVKPSFRA	9	Unmodified	_LSVKPSFRA_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7635192871094	2	502.798009	1003.58147	-0.37222	-0.00018715	-1.1795	-0.00059306	-1.5517	-0.00078021	502.79732441568285	35.303	0.34656	35.347	35.229	35.575	0.04406					12	8	2	0	0	0	0.024511	1	2684	2684		25.574	12.615	1	92662	+		48582	24914	33752	33804	53925	53925					0.07981753059800667
LSVLHSLL	8	Unmodified	_LSVLHSLL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.2767028808594	2	441.276378	880.538203	-0.18577	-8.1977E-05	0.42578	0.00018789	0.24	0.00010591	441.2764290250164	48.5	1.4087	48.567	47.936	49.345	0.066795					90	38	4	0	0	0	0.65272	1	4891	4891		71.378	0	1	3121900			48583	1555	33753	33805	53926	53926					0.09315563282518724
LSVLIGLLD	9	Unmodified	_LSVLIGLLD_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.79718017578125	2	471.797143	941.579734	0.16606	7.8348E-05	-0.19785	-9.3344E-05	-0.031785	-1.4996E-05	471.79693021431285	85.681	0.83841	85.624	85.355	86.194	-0.05761					42	19	3	0	0	0	0.55828	1	10727	10727		55.504	2.1528	1	773500	+		48584	25445	33754	33806	53927	53927					0.10660699251184269
LSVLKHSLL	9	Unmodified	_LSVLKHSLL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60L|p.S1383C|1|0.14|ENSG00000181381|chr4:168379799-168379799|G/C|missense_variant;ENSG00000181381|ENST00000682922|DDX60L;ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.32244873046875	2	505.32386	1008.63317	0.43061	0.0002176	-1.1927	-0.00060271	-0.76212	-0.00038512	505.3233501309143	79.104	3.6681	78.849	78.471	82.139	-0.25471					219	87	5	0	0	0	0.32811	1	9515	9515		71.877	0.58177	1	36200000			48585	5140;9038;15826	33755	33807	53928	53928					0.12919496753693238
LSVLLLQRG	9	Unmodified	_LSVLLLQRG_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8058166503906	2	499.821484	997.628415	-0.42928	-0.00021457	-0.23991	-0.00011991	-0.66919	-0.00033448	499.82165931990266	60.266	0.52803	60.066	59.795	60.323	-0.20016					33	13	3	0	0	0	0.024381	1	6847	6847		29.15	0	1	471220	+		48586	23577	33756	33808	53929	53929					0.1295061261095043
LSVLLQFAP	9	Unmodified	_LSVLLQFAP_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.27484130859375	2	494.29731	986.580068	0.62477	0.00030882	-0.82717	-0.00040887	-0.2024	-0.00010005	494.2968582797455	72.264	0.76965	71.983	71.695	72.465	-0.28124					34	19	3	0	0	0	0.023817	1	8777	8777		51.335	0	1	610740	+		48587	25289	33757	33809	53930	53930					0.08624118971033568
LSVLRRVP	8	Unmodified	_LSVLRRVP_					0	0	0			REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.274169921875	2	470.308544	938.602535	0.59248	0.00027865	-0.65505	-0.00030808	-0.062569	-2.9427E-05	470.3080279921672	42.148	0.50105	42.148	41.888	42.389	0					23	14	2	0	0	0	0.027866	1	3853	3853		57.811	1.0902	1	153100	+		48588	37036	33758	33810	53931	53931					0.13077763159310507
LSVLRRVP	8	Unmodified	_LSVLRRVP_					0	0	0			REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2742004394531	2	470.308544	938.602535	0.43699	0.00020552	-0.56466	-0.00026557	-0.12768	-6.0047E-05	470.3081200528283	42.221	0.46923	42.247	42.024	42.493	0.026012					22	13	2	0	0	0	0.027866	1	3827	3827		37.159	15.199	1	167570	+		48589	37036	33758	33810	53932	53932					0.13077763159310507
LSVLSRSSW	9	Unmodified	_LSVLSRSSW_					0	0	0			REV__ENST00000291439.7_1_19:16345250-16345541:+|nuORF	REV__ENST00000291439.7_1_19:16345250-16345541:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2713012695312	2	517.785099	1033.55564	-0.45462	-0.0002354	-1.2816	-0.0006636	-1.7362	-0.000899	517.7841465985732	28.481	0.5517	28.312	28.089	28.641	-0.16897					26	12	3	0	0	0	0.024495	1	1643	1643		26.693	0	1	421490	+		48590	29943	33759	33811	53933	53933					0.04020858817534645
LSVLVLLPV	9	Unmodified	_LSVLVLLPV_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.82611083984375	2	476.825704	951.636855	0.25525	0.00012171	0.022044	1.0511E-05	0.27729	0.00013222	476.8256523618295	106.23	0.44431	106.23	106.07	106.51	0.00015259					30	16	2	0	0	0	0.78069	1	13573	13573		40.573	7.057	1	261990			48591	6620	33760	33812	53934	53934					0.15910166527555702
LSVLVLLPV	9	Unmodified	_LSVLVLLPV_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	476.825704	951.636855	1.5122	0.00072105	-1.3693	-0.00065293	0.14286	6.8119E-05	476.82501575324966	106.21	0.38264	106.21	106.01	106.39	0	-0.0015944	-0.00077214	NaN	40.573	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134680			48592	6620	33760	33812							0.15910166527555702
LSVLYHLLY	9	Unmodified	_LSVLYHLLY_					0	0	0			REV__ENST00000435741.1_1_Y:28772724-28773147:-|nuORF	REV__ENST00000435741.1_1_Y:28772724-28773147:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2789916992188	2	560.823692	1119.63283	0.34854	0.00019547	-2.3791	-0.0013342	-2.0305	-0.0011388	561.3254088371789	84.996	0.66177	84.793	84.502	85.163	-0.20329					19	15	2	0	0	0	0.024357	1	10247	10247		35.201	0	1	198920	+		48593	29126	33761	33813	53935	53935					0.07780077033862653
LSVNMNVAD	9	Unmodified	_LSVNMNVAD_					0	0	0		nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2;nc|ENSG00000163697|Q92870-3|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.75335693359375	2	481.734217	961.453881	0.24358	0.00011734	-0.1645	-7.9246E-05	0.079081	3.8096E-05	481.73404310882177	49.099	1.8647	49.099	47.717	49.582	0					78	53	3	0	0	0	0.024436	1	4870	4870		38.806	23.941	1	450220			48594	7131	33762	33814	53936	53936					-0.028387555965537103
LSVNMNVAD	9	Unmodified	_LSVNMNVAD_					0	0	0		nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2;nc|ENSG00000163697|Q92870-3|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.734217	961.453881	-1.0819	-0.00052121	1.1537	0.00055576	0.07173	3.4555E-05	481.73467772768265	48.955	1.6743	49.03	48.273	49.947	0.074196	-0.034713	0.00083175	NaN	27.882	65	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348290			48595	7131	33762	33814							-0.028387555965537103
LSVNWVKN	8	Unmodified	_LSVNWVKN_					0	0	0			REV__nc|ENSG00000146054|Q9C029-3|TRIM7	REV__nc|ENSG00000146054|Q9C029-3|TRIM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.28900146484375	2	480.269084	958.523616	0.8395	0.00040319	-0.34833	-0.00016729	0.49118	0.0002359	480.26880471774166	65.585	0.77909	65.585	65.326	66.105	0					35	20	2	0	0	0	0.027866	1	7831	7831		26.693	0	1	2279800	+		48596	24455	33763	33815	53937	53937					0.042694911343687636
LSVPESWASW	10	Unmodified	_LSVPESWASW_					0	0	0			REV__nc|ENSG00000187266|P19235-3|EPOR	REV__nc|ENSG00000187266|P19235-3|EPOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.280029296875	2	581.282389	1160.55022	-0.65918	-0.00038317	-3.2401	-0.0018834	-3.8993	-0.0022666	581.2805236197219	52.116	0.75795	51.997	51.682	52.44	-0.11875					51	19	4	0	0	0	0.3934	2	5395	5395;5419		99.375	0.8197	1	2454900	+		48597	27927	33764	33816	53938;53939	53938					-0.023628647649502454
LSVPKHKL	8	Unmodified	_LSVPKHKL_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.27459716796875	2	461.297645	920.580737	-0.13875	-6.4003E-05	-0.21741	-0.00010029	-0.35615	-0.00016429	461.2974872949356	21.748	0.826	21.557	20.98	21.806	-0.19072					32	16	3	0	0	0	0.027866	1	642	642		18.324	4.5491	1	72140			48598	3354	33765	33817	53940	53940					0.11726958410736188
LSVPTLTMLV	10	Unmodified	_LSVPTLTMLV_					0	0	0			REV__ENSG00000101216|ENST00000370077|GMEB2	REV__ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.303955078125	2	537.317386	1072.62022	-0.058172	-3.1257E-05	3.368	0.0018097	3.3098	0.0017784	537.3190679038709	68.935	0.56758	68.692	68.348	68.916	-0.24278					30	13	4	0	0	0	0.03519	1	8009	8009		53.351	20.539	1	394220	+		48599	21203	33766	33818	53941	53941					0.0868129757927818
LSVPVVKY	8	Unmodified	_LSVPVVKY_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1;REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.777587890625	2	452.778754	903.542954	0.18723	8.4775E-05	-3.2269	-0.0014611	-3.0397	-0.0013763	452.77721620855925	41.318	0.9185	41.341	41.04	41.958	0.023006					66	25	3	0	0	0	0.93274	1	3653	3653		47.916	3.3845	1	4572400	+		48600	26519;22174	33767	33819	53942	53942					0.08732447425279588
LSVPVVKYSAS	11	Unmodified	_LSVPVVKYSAS_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.3457641601562	2	575.329339	1148.64412	0.70875	0.00040777	-2.1997	-0.0012655	-1.4909	-0.00085776	575.3272976749586	97.051	0.223	96.927	96.795	97.018	-0.12368					6	4	2	0	0	0	0.024741	1	12015	12015		30.318	0	1	17826	+		48601	22174	33768	33820	53943	53943					0.07574854337326542
LSVQTSPVP	9	Unmodified	_LSVQTSPVP_					0	0	0		nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2611389160156	2	464.260925	926.507297	1.0017	0.00046505	-0.86484	-0.00040151	0.13686	6.3537E-05	464.2603591104738	59.984	1.0906	59.787	59.339	60.429	-0.19742					60	27	3	0	0	0	0.16468	1	6662	6662		96.19	11.275	1	3684400			48602	18418	33769	33821	53944	53944					0.041103651776211336
LSVRAQAKV	9	Unmodified	_LSVRAQAKV_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3056640625	2	486.303458	970.592364	-0.28783	-0.00013997	3.4377	0.0016718	3.1499	0.0015318	486.3050998143415	72.766	0.8815	72.766	72.373	73.254	0					55	21	4	0	0	0	0.6238	1	8862	8862		51.193	5.2204	1	1696600			48603	4114	33770	33822	53945	53945					0.10589155434081476
LSVRAQAKV	9	Unmodified	_LSVRAQAKV_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.3060607910156	2	486.303458	970.592364	-0.21374	-0.00010394	3.4801	0.0016924	3.2663	0.0015884	486.3050850120906	72.795	0.9108	72.805	72.529	73.44	0.0096512					54	22	4	0	0	0	0.84115	1	8800	8800		36.447	0.82846	1	1602000			48604	4114	33770	33822	53946	53946					0.10589155434081476
LSVRAQAKV	9	Unmodified	_LSVRAQAKV_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3037109375	2	486.303458	970.592364	-0.23737	-0.00011543	-0.36501	-0.00017751	-0.60238	-0.00029294	486.3032593590347	47.428	1.5784	47.332	46.897	48.475	-0.096653					99	42	5	0	0	0	0.75397	1	4630	4630		42.396	5.237	1	15954000			48605	4114	33770	33822	53947	53947					0.10589155434081476
LSVRAQAKV	9	Unmodified	_LSVRAQAKV_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3036193847656	2	486.303458	970.592364	-0.11046	-5.3718E-05	-0.62688	-0.00030485	-0.73734	-0.00035857	486.30316316197457	47.719	1.2822	47.443	47.044	48.326	-0.27598					88	34	4	0	0	0	0.91321	1	4696	4696		31.53	3.6476	1	15986000			48606	4114	33770	33822	53948	53948					0.10589155434081476
LSVRIFMM	8	Unmodified	_LSVRIFMM_					0	0	0		ENST00000586942.5_1_17:74554658-74555119:+|nuORF;ENST00000590435.5_1_17:74553900-74555122:+|nuORF	ENST00000586942.5_1_17:74554658-74555119:+|nuORF	ENST00000586942.5_1_17:74554658-74555119:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7711486816406	2	498.772091	995.529629	-0.00883	-4.4042E-06	-2.1977	-0.0010962	-2.2065	-0.0011006	498.77089615614955	104.88	1.8232	104.88	104.27	106.1	0.00097656					165	59	5	0	0	0	1.043	1	13437	13437		30.504	2.6214	1	5457500			48607	17258	33771	33823	53949	53949					0.03168550050042995
LSVRKGKAL	9	Unmodified	_LSVRKGKAL_					0	0	0		ENSG00000229474|ENST00000682850|PATL2	ENSG00000229474|ENST00000682850|PATL2	ENSG00000229474|ENST00000682850|PATL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8365478515625	2	486.321651	970.62875	-0.16318	-7.9358E-05	-1.7551	-0.00085352	-1.9182	-0.00093288	486.3214348625531	33.876	0.32133	33.652	33.522	33.844	-0.22412					13	7	3	0	0	0	0.024374	1	2455	2455		25.574	0	1	42677			48608	10681	33772	33824	53950	53950					0.14226032330805083
LSVRKSKSGT	10	Unmodified	_LSVRKSKSGT_					0	0	0			REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8169555664062	2	531.81693	1061.61931	0.30294	0.00016111	-0.74641	-0.00039696	-0.44348	-0.00023585	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	1.1265	1	10864	10864		24.519	1.4767	1	3405600	+		48609	19983	33773	33825	53951	53951					0.09096219254638527
LSVRLENFP	9	Unmodified	_LSVRLENFP_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1;REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.80126953125	2	537.800749	1073.58694	3.0172	0.0016227	-2.2579	-0.0012143	0.75934	0.00040837	537.7994018987226	16.928	0.35872	16.928	16.842	17.201	0					11	8	2	0	0	0	0.99229	1	109	109		21.96	5.4867	1	46086	+		48610	22174;33146	33774	33826	53952	53952					0.0530943185160595
LSVRNLSP	8	Unmodified	_LSVRNLSP_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2712707519531	2	443.261259	884.507966	-0.42061	-0.00018644	0.64392	0.00028543	0.22331	9.8987E-05	443.261419661895	47.09	1.1647	47.15	46.482	47.647	0.059097					58	32	2	0	0	0	0.027866	1	4547	4547		47.916	0	1	1347600			48611	3555	33775	33827	53953	53953					0.0610920461731439
LSVRSRPLL	9	Unmodified	_LSVRSRPLL_					0	0	0		ENST00000577499.5_1_18:51882812-51884198:-|nuORF;ENST00000581310.5_1_18:51883493-51884258:-|nuORF	ENST00000577499.5_1_18:51882812-51884198:-|nuORF	ENST00000577499.5_1_18:51882812-51884198:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2450561523438	2	520.832383	1039.65021	-0.47835	-0.00024914	-3.7236	-0.0019394	-4.2019	-0.0021885	520.8305844107476	50.899	0.60305	50.899	50.609	51.212	0					27	16	2	0	0	0	0.02435	1	5314	5314		34.173	5.023	1	227120			48612	17115	33776	33828	53954	53954					0.13197417359515384
LSVRSRPLL	9	Unmodified	_LSVRSRPLL_					0	0	0		ENST00000577499.5_1_18:51882812-51884198:-|nuORF;ENST00000581310.5_1_18:51883493-51884258:-|nuORF	ENST00000577499.5_1_18:51882812-51884198:-|nuORF	ENST00000577499.5_1_18:51882812-51884198:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.244873046875	2	520.832383	1039.65021	-0.43621	-0.00022719	-4.371	-0.0022765	-4.8072	-0.0025037	520.8300940914371	51.093	0.46551	50.944	50.689	51.155	-0.14916					29	12	3	0	0	0	0.024397	1	5338	5338		56.721	15.943	1	279970			48613	17115	33776	33828	53955	53955					0.13197417359515384
LSVRSRPLL	9	Unmodified	_LSVRSRPLL_					0	0	0		ENST00000577499.5_1_18:51882812-51884198:-|nuORF;ENST00000581310.5_1_18:51883493-51884258:-|nuORF	ENST00000577499.5_1_18:51882812-51884198:-|nuORF	ENST00000577499.5_1_18:51882812-51884198:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2445068359375	2	520.832383	1039.65021	-0.91786	-0.00047805	-4.1905	-0.0021825	-5.1083	-0.0026606	520.8304057481212	50.822	0.57385	50.903	50.609	51.183	0.08099					27	15	2	0	0	0	0.024367	1	5238	5238		62.107	9.1707	1	290490			48614	17115	33776	33828	53956	53956					0.13197417359515384
LSVSLAELV	9	Unmodified	_LSVSLAELV_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-4|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-4|CCDC40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.77874755859375	2	465.778951	929.543348	0.3767	0.00017546	-3.2562	-0.0015167	-2.8795	-0.0013412	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.59099	1	9640	9640		53.351	0	1	1283800	+		48615	36724	33777	33829	53957	53957					0.07575822354465345
LSVSNQPPK	9	Unmodified	_LSVSNQPPK_					0	0	0		ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	ENSG00000111676|ENST00000396684|ATN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3089599609375	2	485.271824	968.529095	-0.36076	-0.00017507	-0.2882	-0.00013985	-0.64896	-0.00031492	485.27090748346865	65.525	0.60974	65.563	65.288	65.898	0.037376					22	16	2	0	0	0	0.024381	1	7675	7675		37.159	5.2042	1	221370			48616	3135	33778	33830	53958	53958					0.043571699261860886
LSVSTQAL	8	Unmodified	_LSVSTQAL_					0	0	0			REV__ENSG00000171054|ENST00000338616|OR13H1	REV__ENSG00000171054|ENST00000338616|OR13H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.7347412109375	2	409.734543	817.454533	-0.17797	-7.2921E-05	0.80853	0.00033128	0.63056	0.00025836	409.73474256627554	30.951	0.60918	30.773	30.496	31.106	-0.17867					34	14	3	0	0	0	0.42327	1	2017	2017		94.006	0	1	913570	+		48617	26536	33779	33831	53959	53959					0.03850407114805421
LSVSTQAL	8	Unmodified	_LSVSTQAL_					0	0	0			REV__ENSG00000171054|ENST00000338616|OR13H1	REV__ENSG00000171054|ENST00000338616|OR13H1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	409.734543	817.454533	-0.17797	-7.2921E-05	0.80853	0.00033128	0.63056	0.00025836	409.73474256627554	30.951	0.60918	30.773	30.496	31.106	-0.17867	-0.029575	-2.2152E-05	NaN	94.006	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	913570	+		48618	26536	33779	33831							0.03850407114805421
LSVSVFNNKN	10	Unmodified	_LSVSVFNNKN_					0	0	0		ENSG00000136827|ENST00000351698|TOR1A;ENST00000473604.2_1_9:132580793-132585603:-|nuORF	ENSG00000136827|ENST00000351698|TOR1A	ENSG00000136827|ENST00000351698|TOR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.27978515625	2	561.301113	1120.58767	-0.70209	-0.00039408	-4.1334	-0.0023201	-4.8355	-0.0027141	561.8001228297752	84.948	0.5393	84.974	84.871	85.41	0.025536					15	12	2	0	0	0	0.03519	1	10625	10625		37.812	0	1	239620			48619	5052	33780	33832	53960	53960					0.032202265006844755
LSVTDNPYG	9	Unmodified	_LSVTDNPYG_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.26263427734375	2	483.232364	964.450176	-0.87728	-0.00042393	-4.3914	-0.002122	-5.2686	-0.002546	483.2300666498391	36.047	0.43396	36.047	35.728	36.162	0					18	11	2	0	0	0	0.024381	1	2790	2790		37.159	0	1	87138	+		48620	24762	33781	33833	53961	53961					-0.033471020987576594
LSVTPGEKV	9	Unmodified	_LSVTPGEKV_					0	0	0		nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2847900390625	2	465.26875	928.522947	-0.22703	-0.00010563	0.42318	0.00019689	0.19615	9.1263E-05	465.26885149952716	58.865	1.0403	58.677	58.308	59.348	-0.18795					45	25	3	0	0	0	0.024447	1	6444	6444		49.442	12.282	1	1754500			48621	18680	33782	33834	53962	53962					0.05582651694669494
LSVTPGEKV	9	Unmodified	_LSVTPGEKV_					0	0	0		nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.26875	928.522947	0.31074	0.00014458	-0.19928	-9.2719E-05	0.11146	5.1858E-05	465.2685629739069	58.868	0.76852	58.686	58.426	59.194	-0.18134	0.0045657	-0.00033325	NaN	18.262	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1725000			48622	18680	33782	33834							0.05582651694669494
LSVTVRTQ	8	Unmodified	_LSVTVRTQ_					0	0	0		ENST00000260356.5_1_15:39876606-39880293:+|nuORF	ENST00000260356.5_1_15:39876606-39880293:+|nuORF	ENST00000260356.5_1_15:39876606-39880293:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2303161621094	2	452.266542	902.51853	0.30456	0.00013774	1.0378	0.00046938	1.3424	0.00060712	452.2669690132569	26.003	0.50272	26.083	25.706	26.209	0.080494					16	11	2	0	0	0	0.027866	1	1242	1242		30.504	0	1	40844			48623	11448	33783	33835	53963	53963					0.06337187271753919
LSVTVRTQ	8	Unmodified	_LSVTVRTQ_					0	0	0		ENST00000260356.5_1_15:39876606-39880293:+|nuORF	ENST00000260356.5_1_15:39876606-39880293:+|nuORF	ENST00000260356.5_1_15:39876606-39880293:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	452.266542	902.51853	-0.081395	-3.6812E-05	1.7364	0.0007853	1.655	0.00074849	452.26724309703974	26.144	0.58881	26.144	25.694	26.283	0	0.030551	0.00024463	NaN	38.806	13	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46594			48624	11448	33783	33835							0.06337187271753919
LSVVDSVLW	9	Unmodified	_LSVVDSVLW_					0	0	0		ENST00000583786.5_1_17:25621212-25628832:+|nuORF;ENST00000581440.5_1_17:25621212-25628810:+|nuORF;ENST00000579733.5_1_17:25621212-25631826:+|nuORF;ENST00000578312.5_1_17:25621212-25624248:+|nuORF;ENST00000581089.1_1_17:25621212-25630452:+|nuORF	ENST00000583786.5_1_17:25621212-25628832:+|nuORF	ENST00000583786.5_1_17:25621212-25628832:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.2840576171875	2	509.2844	1016.55425	-0.042641	-2.1717E-05	0.011928	6.0748E-06	-0.030713	-1.5642E-05	509.28430081733813	69.901	0.81725	69.678	69.348	70.165	-0.22245					63	19	5	0	0	0	0.31247	1	8114	8114		73.975	2.0973	1	2294300			48625	17128	33784	33836	53964	53964					0.04663224728756177
LSVVFYNTV	9	Unmodified	_LSVVFYNTV_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7667236328125	2	521.2844	1040.55425	-0.4339	-0.00022618	0.90033	0.00046933	0.46643	0.00024314	521.284984186539	47.531	0.2859	47.434	47.2	47.486	-0.096649					11	7	2	0	0	0	0.024021	1	4625	4625		68.787	17.451	1	173620	+		48626	22972	33785	33837	53965	53965					0.035592247287468126
LSVVKGRLP	9	Unmodified	_LSVVKGRLP_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.8166198730469	2	484.816202	967.617851	-0.74911	-0.00036318	0.3693	0.00017904	-0.3798	-0.00018413	484.8163046792854	34.18	0.75113	34.004	33.662	34.413	-0.17557					34	18	2	0	0	0	0.67308	1	2491	2491		47.916	3.7988	1	2278600			48627	6711	33786	33838	53966	53966					0.13274629956515582
LSVVLLTF	8	Unmodified	_LSVVLLTF_					0	0	0		CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.2322998046875	2	446.281129	890.547705	-1.0059	-0.0004489	3.6016	0.0016073	2.5957	0.0011584	446.2826306011976	37.843	0.17651	37.761	37.636	37.813	-0.082516					7	4	2	0	0	0	0.027866	1	3109	3109		42.474	8.9589	1	62637			48628	606	33787	33839	53967	53967					0.0980533156804313
LSVVPPLFCL	10	Unmodified	_LSVVPPLFCL_					0	0	0			REV__ENST00000530962.5_1_11:111412247-111414725:+|nuORF	REV__ENST00000530962.5_1_11:111412247-111414725:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.3148193359375	2	544.314646	1086.61474	-0.37534	-0.0002043	-0.12763	-6.9469E-05	-0.50296	-0.00027377	544.3145033770026	42.139	0.8863	42.016	41.718	42.604	-0.12299					64	23	4	0	0	0	1.0004	1	3792	3792		45.952	6.6991	1	2658000	+		48629	34549	33788	33840	53968	53968					0.07489618787485597
LSVWCLWAL	9	Unmodified	_LSVWCLWAL_					0	0	0			REV__ENST00000441576.6_2_3:49053031-49053064:-|nuORF	REV__ENST00000441576.6_2_3:49053031-49053064:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3009643554688	2	545.791338	1089.56812	-1.1776	-0.00064271	1.4702	0.00080242	0.29264	0.00015972	545.7917075225331	68.827	0.40819	68.565	68.424	68.832	-0.26166					16	9	3	0	0	0	0.024436	1	7988	7988		47.916	16.386	1	414330	+		48630	32549	33789	33841	53969	53969					0.026921789561811238
LSWDSLEGY	9	Unmodified	_LSWDSLEGY_					0	0	0			REV__ENSG00000105246|ENST00000221847|EBI3	REV__ENSG00000105246|ENST00000221847|EBI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7630004882812	2	535.245472	1068.47639	-0.39466	-0.00021124	-2.6956	-0.0014428	-3.0903	-0.0016541	535.2439168811469	49.632	0.46155	49.352	49.123	49.584	-0.27977					20	11	2	0	0	0	0.024506	1	4957	4957		16.473	0	1	369800	+		48631	21503	33790	33842	53970	53970					-0.05510832927279807
LSWEAQAPG	9	Unmodified	_LSWEAQAPG_					0	0	0			REV__ENST00000598742.5_1_19:42376050-42376116:+|nuORF	REV__ENST00000598742.5_1_19:42376050-42376116:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7350769042969	2	479.735074	957.455596	-0.28822	-0.00013827	0.10219	4.9022E-05	-0.18603	-8.9245E-05	479.735127465436	59.625	2.406	59.711	59.314	61.72	0.085682					151	63	4	0	0	0	0.35646	1	6708	6708		68.787	2.3575	1	56880000	+		48632	35823	33791	33843	53971	53971					-0.024833785162854838
LSWFVCLN	8	Unmodified	_LSWFVCLN_					0	0	0		ENST00000415891.5_1_2:29380207-29397312:+|nuORF	ENST00000415891.5_1_2:29380207-29397312:+|nuORF	ENST00000415891.5_1_2:29380207-29397312:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79290771484375	2	491.246763	980.478974	-0.01404	-6.8973E-06	3.7493	0.0018418	3.7353	0.001835	491.24841409363586	61.599	0.41795	61.599	61.414	61.832	0					17	10	2	0	0	0	0.027866	1	7127	7127		45.952	0	1	192150			48633	13888	33792	33844	53972	53972					-0.01204656003335458
LSWIDAQV	8	Unmodified	_LSWIDAQV_					0	0	0			REV__ENST00000478403.5_1_2:242436769-242438604:-|nuORF	REV__ENST00000478403.5_1_2:242436769-242438604:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2510070800781	2	466.247818	930.481082	0.43519	0.00020291	1.1882	0.00055401	1.6234	0.00075692	466.2482847321034	65.091	0.38754	65.128	64.967	65.355	0.037376					15	10	2	0	0	0	0.027866	1	7591	7591		19.36	0	1	259220	+		48634	33366	33793	33845	53973	53973					0.013060960061352489
LSWINALDW	9	Unmodified	_LSWINALDW_					0	0	0			REV__ENST00000523702.5_1_2:211438076-211442208:+|nuORF	REV__ENST00000523702.5_1_2:211438076-211442208:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2431030273438	2	559.287474	1116.5604	-0.5024	-0.00028099	-1.5787	-0.00088294	-2.0811	-0.0011639	559.2858953407193	69.919	0.58893	69.651	69.451	70.04	-0.26724					23	13	3	0	0	0	0.024292	1	8116	8116		68.787	15.435	1	142320	+		48635	34358	33794	33846	53974	53974					0.0067774296028346726
LSWINALDW	9	Unmodified	_LSWINALDW_					0	0	0			REV__ENST00000523702.5_1_2:211438076-211442208:+|nuORF	REV__ENST00000523702.5_1_2:211438076-211442208:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.287474	1116.5604	0.037275	2.0848E-05	-3.0083	-0.0016825	-2.971	-0.0016616	559.2857751997986	69.859	0.41751	69.608	69.399	69.817	-0.25063	-0.021568	-0.00048431	NaN	58.782	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181860	+		48636	34358	33794	33846							0.0067774296028346726
LSWIRPSD	8	Unmodified	_LSWIRPSD_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7900085449219	2	487.258717	972.50288	-0.28681	-0.00013975	0.71807	0.00034989	0.43127	0.00021014	487.2589276359334	52.353	0.73105	52.353	51.942	52.673	0					32	18	2	0	0	0	0.027866	1	5543	5543		27.882	0	1	281020			48637	10612	33795	33847	53975	53975					0.015529007547115725
LSWKCGEASV	10	Unmodified	_LSWKCGEASV_					0	0	0			REV__ENST00000420415.5_2_3:195778405-195778474:-|nuORF	REV__ENST00000420415.5_2_3:195778405-195778474:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.79443359375	2	540.263142	1078.51173	-1.9271	-0.0010411	-0.99312	-0.00053655	-2.9202	-0.0015777	540.2626545504673	51.81	0.81805	51.541	51.163	51.981	-0.26903					38	21	3	0	0	0	0.03519	1	5317	5317		26.063	0	1	1230500	+		48638	32165	33796	33848	53976	53976					-0.024384936711157934
LSWLDVALT	9	Unmodified	_LSWLDVALT_					0	0	0			REV__UHMK1|p.S221L|1|0.16|ENSG00000152332|chr1:162501013-162501013|C/T|missense_variant	REV__UHMK1|p.S221L|1|0.16|ENSG00000152332|chr1:162501013-162501013|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.292724609375	2	509.2844	1016.55425	-0.34598	-0.0001762	-2.558	-0.0013028	-2.904	-0.001479	509.2831583156341	64.518	1.0287	64.284	63.579	64.607	-0.2345					46	25	3	0	0	0	0.024294	1	7365	7365		29.15	0	1	674660	+		48639	37757	33797	33849	53977	53977					0.04663224728756177
LSWLKVSGDA	10	Unmodified	_LSWLKVSGDA_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7908935546875	2	538.292756	1074.57096	0.043682	2.3514E-05	2.6503	0.0014267	2.694	0.0014502	538.2936153059721	59.095	0.64791	58.914	58.587	59.235	-0.18133					25	15	3	0	0	0	0.03519	1	6494	6494		67.494	21.521	1	791430	+		48640	23697	33798	33850	53978	53978					0.036657256147236694
LSWNPGHS	8	Unmodified	_LSWNPGHS_					0	0	0		ENST00000340360.10_2_11:74553867-74554029:-|nuORF	ENST00000340360.10_2_11:74553867-74554029:-|nuORF	ENST00000340360.10_2_11:74553867-74554029:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.7412414550781	2	449.214309	896.414065	-1.1317	-0.00050837	1.7933	0.00080556	0.66159	0.00029719	449.2148380529232	40.472	0.59876	40.242	39.851	40.45	-0.23021					23	15	2	0	0	0	0.027866	1	3462	3462		35.618	0	1	442120			48641	12470	33799	33851	53979	53979					-0.03828514484951029
LSWRSGPA	8	Unmodified	_LSWRSGPA_					0	0	0			REV__nc|ENSG00000142632|Q8IW93-2|ARHGEF19	REV__nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.21923828125	2	437.232502	872.450451	-0.80543	-0.00035216	-4.2865	-0.0018742	-5.0919	-0.0022263	437.229201257996	44.841	0.2035	44.693	44.593	44.796	-0.1488					8	5	2	0	0	0	0.027866	1	4285	4285		31.955	0	1	54515	+		48642	24173	33800	33852	53980	53980					0.009123624117592044
LSWVFLVVI	9	Unmodified	_LSWVFLVVI_					0	0	0		nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.32861328125	2	538.331153	1074.64775	-0.82593	-0.00044463	-3.5036	-0.0018861	-4.3295	-0.0023307	538.329091746823	81.885	0.85486	81.885	81.341	82.195	0					54	20	4	0	0	0	0.4855	3	10224	10200;10211;10224		60.294	1.3775	1	1463700			48643	18733	33801	33853	53981;53982;53983	53983					0.11341568901866594
LSWVFLVVI	9	Unmodified	_LSWVFLVVI_					0	0	0		nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3285522460938	2	538.331153	1074.64775	-0.27569	-0.00014841	-3.9604	-0.002132	-4.2361	-0.0022804	538.3288020126681	81.973	0.97226	81.863	81.237	82.21	-0.11006					62	23	4	0	0	0	0.26797	1	10177	10177		79.939	21.709	1	1343800			48644	18733	33801	33853	53984	53984					0.11341568901866594
LSWVFLVVI	9	Unmodified	_LSWVFLVVI_					0	0	0		nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3280639648438	2	538.331153	1074.64775	-1.1022	-0.00059334	-3.1661	-0.0017044	-4.2683	-0.0022978	538.3292044058085	81.798	0.81689	81.824	81.372	82.189	0.025711					49	19	4	0	0	0	0.36105	1	10116	10116		68.485	0.99103	1	1371100			48645	18733	33801	33853	53985	53985					0.11341568901866594
LSWVFLVVI	9	Unmodified	_LSWVFLVVI_					0	0	0		nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3297729492188	2	538.331153	1074.64775	0.071695	3.8596E-05	-3.7641	-0.0020263	-3.6924	-0.0019877	538.3290063340725	81.772	1.0242	81.543	81.271	82.295	-0.2289					55	23	3	0	0	0	0.26797	1	9825	9825		79.939	21.709	1	886860			48646	18733	33801	33853	53986	53986					0.11341568901866594
LSWVFLVVI	9	Unmodified	_LSWVFLVVI_					0	0	0		nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3292236328125	2	538.331153	1074.64775	-0.14748	-7.9395E-05	-3.7075	-0.0019959	-3.855	-0.0020752	538.3290101246572	81.787	0.89333	81.593	81.295	82.188	-0.19334					51	20	4	0	0	0	0.26797	1	9846	9846		79.939	2.6216	1	800830			48647	18733	33801	33853	53987	53987					0.11341568901866594
LSWVFLVVI	9	Unmodified	_LSWVFLVVI_					0	0	0		nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.32861328125	2	538.331153	1074.64775	-1.4012	-0.00075432	-2.4239	-0.0013049	-3.8251	-0.0020592	538.3296849235649	81.713	0.80918	81.57	81.275	82.084	-0.14248					45	18	4	0	0	0	0.20304	1	9831	9831		88.643	8.1883	1	773600			48648	18733	33801	33853	53988	53988					0.11341568901866594
LSWWHSAF	8	Unmodified	_LSWWHSAF_					0	0	0			REV__ENST00000216962.8_1_20:25277170-25277263:+|nuORF	REV__ENST00000216962.8_1_20:25277170-25277263:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	517.248152	1032.48175	-0.54554	-0.00028218	-1.5856	-0.00082015	-2.1311	-0.0011023	517.2471352054441	44.879	0.65314	44.626	44.212	44.865	-0.25252					24	16	2	0	0	0	0.027866	1	4176	4176		14.664	0	1	132160	+		48649	29324	33802	33854	53989	53989					-0.03319064554148099
LSYAAGWAEP	10	Unmodified	_LSYAAGWAEP_					0	0	0			REV__ENSG00000176922|ENST00000322101|OR51S1	REV__ENSG00000176922|ENST00000322101|OR51S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7864990234375	2	532.756007	1063.49746	-0.54943	-0.00029271	-3.4441	-0.0018349	-3.9935	-0.0021276	533.2557766748023	45.633	0.41563	45.381	45.223	45.638	-0.25252					18	11	2	0	0	0	0.03519	1	4362	4362		42.396	10.441	1	226560	+		48650	27062	33803	33855	53990	53990					-0.03174822827782009
LSYAVHVM	8	Unmodified	_LSYAVHVM_					0	0	0			REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2425537109375	2	460.238938	918.463324	3.6501	0.0016799	4.1792	0.0019234	7.8294	0.0036034	460.2407406788563	17.077	0.59181	17.077	16.907	17.498	0					27	12	4	0	0	0	1.0017	1	125	125		37.028	1.8278	1	623770	+		48651	25120	33804	33856	53991	53991					0.000830574796395922
LSYAVHVM	8	Unmodified	_LSYAVHVM_					0	0	0			REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	460.238938	918.463324	0.56459	0.00025985	7.3131	0.0033658	7.8777	0.0036256	460.2421417516996	17.201	0.75616	17.059	16.895	17.651	-0.14278	-0.0093602	0.0017401	NaN	37.028	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470610	+		48652	25120	33804	33856							0.000830574796395922
LSYDSLLN	8	Unmodified	_LSYDSLLN_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MSMS	OPSCC_40_ClassI_Rep-2	5	462.7373352050781	2	462.737283	923.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.131	1	72.866	72.366	73.366	-0.26479								0	0	0	0.60555	1	8595	8595		47.916	5.5195	1				48653	2095	33805	33857	53992	53992					-0.004779140933692361
LSYFGFLV	8	Unmodified	_LSYFGFLV_					0	0	0			REV__ENST00000337619.9_1_7:100803850-100804129:+|nuORF	REV__ENST00000337619.9_1_7:100803850-100804129:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2717590332031	2	473.257654	944.500755	-0.63659	-0.00030127	-3.4152	-0.0016163	-4.0518	-0.0019175	473.2555837911517	64.799	0.45433	64.536	64.304	64.758	-0.2626					16	11	2	0	0	0	0.027866	1	7641	7641		28.254	9.9299	1	195600	+		48654	30567	33806	33858	53993	53993					0.02628472016908745
LSYFLLFF	8	Unmodified	_LSYFLLFF_					0	0	0			REV__ENSG00000221858|ENST00000641592|OR2A12	REV__ENSG00000221858|ENST00000641592|OR2A12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2485961914062	2	525.288954	1048.56336	-0.91849	-0.00048247	3.6786	0.0019323	2.7601	0.0014498	525.2905643174173	26.724	0.57711	26.488	26.13	26.707	-0.23603					19	14	2	0	0	0	0.027866	1	1440	1440		9.4706	0	1	68652	+		48655	28832	33807	33859	53994	53994					0.04101618085087466
LSYFRSLFS	9	Unmodified	_LSYFRSLFS_					0	0	0			REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.3108520507812	2	560.295299	1118.57605	-0.63695	-0.00035688	-1.0743	-0.0006019	-1.7112	-0.00095878	560.2946601005792	51.208	0.94862	51.058	50.594	51.542	-0.14916					39	26	2	0	0	0	0.024506	1	5461	5461		16.473	0	1	352910	+		48656	36579	33808	33860	53995	53995					0.02150029477343196
LSYGLISENL	10	Unmodified	_LSYGLISENL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.281982421875	2	554.797872	1107.58119	-0.51783	-0.00028729	0.38176	0.0002118	-0.13607	-7.5492E-05	554.7982407147653	93.755	0.48685	93.761	93.604	94.091	0.0059891					17	11	2	0	0	0	0.03519	1	11815	11815		18.262	3.3972	1	155850			48657	3841	33809	33861	53996	53996					0.0317028854929049
LSYGLISENL	10	Unmodified	_LSYGLISENL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	554.797872	1107.58119	0.13415	7.4424E-05	-0.33723	-0.0001871	-0.20309	-0.00011267	554.7976032159768	93.818	0.52198	93.818	93.645	94.167	0	0.033563	-0.00052559	NaN	18.262	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156960			48658	3841	33809	33861							0.0317028854929049
LSYGLISENL	10	Unmodified	_LSYGLISENL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.797872	1107.58119	-0.67295	-0.00037335	0.17006	9.4348E-05	-0.50289	-0.000279	554.7980720542565	93.778	0.44786	93.775	93.581	94.029	-0.0035019	-0.0099096	3.7297E-05	NaN	18.262	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180390			48659	3841	33809	33861							0.0317028854929049
LSYIFPNLT	9	Unmodified	_LSYIFPNLT_					0	0	0			REV__ENSG00000171501|ENST00000373688|OR1N2	REV__ENSG00000171501|ENST00000373688|OR1N2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8136596679688	2	534.292225	1066.5699	-0.43166	-0.00023063	-1.343	-0.00071757	-1.7747	-0.0009482	534.2911972255412	103.6	0.66935	103.61	103.35	104.02	0.0054245					32	17	3	0	0	0	0.024447	1	13311	13311		40.778	5.1599	1	114490	+		48660	26574	33810	33862	53997	53997					0.03927511245797177
LSYKTVKAET	10	Unmodified	_LSYKTVKAET_					0	0	0		nc|ENSG00000186075|Q6X784-2|ZPBP2;ENSG00000186075|ENST00000348931|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.2347412109375	2	570.318971	1138.62339	-0.13138	-7.493E-05	3.3251	0.0018964	3.1937	0.0018215	570.3205540880514	69.433	0.45387	69.21	68.978	69.432	-0.22246					21	10	3	0	0	0	0.03519	1	8064	8064		31.53	0	1	165080			48661	9508	33811	33863	53998	53998					0.059622639576673464
LSYLEPRGSLL	11	Unmodified	_LSYLEPRGSLL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;ENST00000567704.5_1_15:78188620-78189748:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.70989990234375	3	416.571322	1246.69214	-0.88552	-0.00036888	-3.3829	-0.0014092	-4.2684	-0.0017781	416.9040223549846	25.992	0.23412	25.829	25.631	25.865	-0.16331					7	5	2	0	0	0	0.02473	1	1261	1261		21.032	4.5024	1	28905			48662	8381	33812	33864	53999	53999					0.07865928257388077
LSYLTIFLD	9	Unmodified	_LSYLTIFLD_					0	0	0		ENST00000574285.2_1_16:9203969-9204164:+|nuORF	ENST00000574285.2_1_16:9203969-9204164:+|nuORF	ENST00000574285.2_1_16:9203969-9204164:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.3132934570312	2	542.799883	1083.58521	-1.0871	-0.0005901	0.2204	0.00011964	-0.86674	-0.00047047	543.3015623292395	69.527	1.0975	69.542	68.937	70.034	0.015121					39	27	2	0	0	0	0.024457	1	8264	8264		21.96	1.9631	1	827720			48663	17081	33813	33865	54000	54000					0.04676378042995566
LSYNATTGR	9	Unmodified	_LSYNATTGR_					0	0	0		nc|ENSG00000139973|Q17RD7-3|SYT16;nc|ENSG00000139973|Q17RD7-2|SYT16;ENSG00000139973|ENST00000683842|SYT16	nc|ENSG00000139973|Q17RD7-3|SYT16	nc|ENSG00000139973|Q17RD7-3|SYT16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7696533203125	2	491.751256	981.487959	-0.28942	-0.00014232	1.5711	0.00077257	1.2816	0.00063025	491.75264563744275	42.28	0.1032	42.306	42.255	42.358	0.026012					4	2	2	0	0	0	0.024292	1	3821	3821		40.778	7.2626	1	116460			48664	5380	33814	33866	54001	54001					-0.0035259111328969084
LSYNPIITIE	10	Unmodified	_LSYNPIITIE_					0	0	0		LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.7562255859375	2	581.821347	1161.62814	-0.34217	-0.00019908	4.4258	0.002575	4.0836	0.0023759	581.8254012841323	65.668	0.49999	65.426	65.248	65.748	-0.24145					17	11	2	0	0	0	0.03519	1	7486	7486		42.864	10.909	1	338700			48665	17916	33815	33867	54002	54002					0.053791481004282105
LSYNPIITIE	10	Unmodified	_LSYNPIITIE_					0	0	0		LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	581.821347	1161.62814	-1.0964	-0.00063794	10.892	0.0063371	9.7954	0.0056992	581.8275953497911	65.587	0.89912	65.314	65.09	65.99	-0.27282	-0.023648	0.00034564	NaN	35.152	63	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3082700			48666	17916	33815	33867							0.053791481004282105
LSYNPIITIE	10	Unmodified	_LSYNPIITIE_					0	0	0		LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	LINGO2|p.S286I|1|0.49|ENSG00000174482|chr9:27949815-27949815|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.821347	1161.62814	-0.98266	-0.00057173	8.3347	0.0048493	7.3521	0.0042776	581.8264008201722	65.583	0.45577	65.332	65.229	65.685	-0.25112	-0.0057313	-0.0026299	NaN	35.152	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576430			48667	17916	33815	33867							0.053791481004282105
LSYPQTNVF	9	Unmodified	_LSYPQTNVF_					0	0	0		ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2876586914062	2	534.771657	1067.52876	-0.71035	-0.00037987	0.22837	0.00012213	-0.48197	-0.00025775	534.7718883967532	81.055	0.69872	80.913	80.576	81.275	-0.14248					41	16	3	0	0	0	0.02435	1	9700	9700		51.335	5.3835	1	375520			48668	8708	33816	33868	54003	54003					-0.0023024979368528875
LSYRTTGSTY	10	Unmodified	_LSYRTTGSTY_					0	0	0		nc|ENSG00000172197|Q6ZNC8-3|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.7853393554688	2	574.782753	1147.55095	-0.24961	-0.00014347	3.3434	0.0019218	3.0938	0.0017783	574.7846923137164	52.602	1.2122	52.475	51.93	53.143	-0.12705					105	30	5	0	0	0	0.78438	1	5485	5485		61.691	6.9689	1	3201900			48669	8253	33817	33869	54004	54004					-0.01692070115882416
LSYRTTGSTY	10	Unmodified	_LSYRTTGSTY_					0	0	0		nc|ENSG00000172197|Q6ZNC8-3|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.784423828125	2	574.782753	1147.55095	0.084397	4.851E-05	2.8456	0.0016356	2.93	0.0016841	574.784504939247	52.883	1.1621	52.625	52.1	53.262	-0.25839					99	29	5	0	0	0	0.88896	1	5515	5515		54.776	1.8396	1	2551400			48670	8253	33817	33869	54005	54005					-0.01692070115882416
LSYRTTGSTY	10	Unmodified	_LSYRTTGSTY_					0	0	0		nc|ENSG00000172197|Q6ZNC8-3|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7849731445312	2	574.782753	1147.55095	-0.23714	-0.00013631	3.1122	0.0017888	2.8751	0.0016525	574.784734892199	52.774	1.026	52.584	51.993	53.019	-0.18982					91	25	5	0	0	0	1.0002	1	5449	5449		45.972	1.4412	1	2631100			48671	8253	33817	33869	54006	54006					-0.01692070115882416
LSYSCSFLIL	10	Unmodified	_LSYSCSFLIL_					0	0	0			REV__ENST00000539493.2_1_2:135888265-135890501:+|nuORF	REV__ENST00000539493.2_1_2:135888265-135890501:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.3265991210938	2	573.299193	1144.58383	-0.50388	-0.00028888	2.3141	0.0013266	1.8102	0.0010378	573.8007583021207	73.056	0.73543	72.858	72.454	73.19	-0.19791					41	17	3	0	0	0	0.03519	1	8532	8532		26.693	0	1	557570	+		48672	34732	33818	33870	54007	54007					0.017324206826060617
LSYTLYED	8	Unmodified	_LSYTLYED_					0	0	0			REV__ENST00000459831.1_1_1:89524386-89525013:-|nuORF	REV__ENST00000459831.1_1_1:89524386-89525013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2489318847656	2	502.234573	1002.45459	0.17971	9.0255E-05	2.5556	0.0012835	2.7353	0.0013738	502.2356743533947	105	0.45243	104.99	104.76	105.21	-0.0016022					25	15	2	0	0	0	0.027866	1	13390	13390		35.201	0	1	117250	+		48673	22335	33819	33871	54008	54008					-0.046536376758581355
LSYTRSSDL	9	Unmodified	_LSYTRSSDL_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.810302734375	2	521.264196	1040.51384	-0.12133	-6.3245E-05	2.0594	0.0010735	1.938	0.0010102	521.2657805005963	54.123	0.59351	53.976	53.784	54.378	-0.14723					24	16	2	0	0	0	0.024506	1	5841	5841		30.504	0	1	137260	+		48674	27801	33820	33872	54009	54009					-0.004797416616611372
LSYVEINIEF	10	Unmodified	_LSYVEINIEF_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.55023193359375	3	409.548295	1225.62306	0.59017	0.0002417	3.2296	0.0013227	3.8197	0.0015644	409.5495738657949	53.353	0.6869	53.095	52.683	53.37	-0.25838					68	17	5	0	0	0	1.0545	1	5579	5579		38.754	0.039523	1	4505800	+		48675	19148	33821	33873	54010	54010					0.01926844237800651
LTAAHCVR	8	Unmodified	_LTAAHCVR_					0	0	0		CON__Q32PI4	CON__Q32PI4	CON__Q32PI4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.7562561035156	2	435.734354	869.454156	0.25718	0.00011206	-1.6237	-0.00070752	-1.3666	-0.00059546	435.73446769410646	63.755	0.21802	63.503	63.372	63.59	-0.25141					7	5	2	0	0	0	0.027866	1	7423	7423		29.15	17.639	1	59310		+	48676	551	33822	33874	54011	54011					0.014207089139631535
LTACPKPSVK	10	Unmodified	_LTACPKPSVK_					0	0	0			REV__ENST00000504024.1_3_4:42590308-42602519:-|nuORF	REV__ENST00000504024.1_3_4:42590308-42602519:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8168334960938	2	522.299527	1042.5845	-0.6324	-0.0003303	-1.7795	-0.00092944	-2.4119	-0.0012597	522.2977300889497	64.518	0.52483	64.518	64.311	64.836	0					17	13	2	0	0	0	0.03519	1	7615	7615		47.96	10.8	1	160370	+		48677	33973	33823	33875	54012	54012					0.06491260122288622
LTAERQLI	8	Unmodified	_LTAERQLI_					0	0	0			REV__ENSG00000124019|ENST00000409685|FAM124B	REV__ENSG00000124019|ENST00000409685|FAM124B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7721252441406	2	472.282192	942.549831	0.62891	0.00029702	-1.2486	-0.00058969	-0.61969	-0.00029267	472.28149093829495	46.8	0.73869	46.8	46.587	47.326	0					33	19	2	0	0	0	0.027866	1	4636	4636		47.916	0	1	1602800	+		48678	22726	33824	33876	54013	54013					0.0762576030585933
LTAGLGRYLGA	11	Unmodified	_LTAGLGRYLGA_					0	0	0			REV__ENSG00000182902|ENST00000327451|SLC25A18	REV__ENSG00000182902|ENST00000327451|SLC25A18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.3148803710938	2	546.314023	1090.61349	-0.51669	-0.00028227	-1.2868	-0.000703	-1.8035	-0.00098528	546.3138348140509	45.462	1.1673	45.362	44.868	46.036	-0.099445					119	32	6	0	0	0	0.20553	1	4320	4320		98.629	0	1	15784000	+		48679	27519	33825	33877	54014	54014					0.07181120742939129
LTAGLGRYLGA	11	Unmodified	_LTAGLGRYLGA_					0	0	0			REV__ENSG00000182902|ENST00000327451|SLC25A18	REV__ENSG00000182902|ENST00000327451|SLC25A18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.3139038085938	2	546.314023	1090.61349	-0.24517	-0.00013394	-1.2312	-0.00067262	-1.4764	-0.00080656	546.3135849347806	45.64	1.197	45.388	45.124	46.321	-0.25252					107	32	6	0	0	0	0.048406	1	4342	4342		122.18	0	1	13593000	+		48680	27519	33825	33877	54015	54015					0.07181120742939129
LTAGLGRYLGA	11	Unmodified	_LTAGLGRYLGA_					0	0	0			REV__ENSG00000182902|ENST00000327451|SLC25A18	REV__ENSG00000182902|ENST00000327451|SLC25A18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.3135375976562	2	546.314023	1090.61349	-1.0325	-0.00056405	-0.4929	-0.00026928	-1.5254	-0.00083332	546.3139995160525	45.578	0.88279	45.375	45.161	46.044	-0.20226					95	24	6	0	0	0	0.041837	2	4313	4313;4339		124.08	5.2724	1	14376000	+		48681	27519	33825	33877	54016;54017	54016					0.07181120742939129
LTAGVPNKVVE	11	Unmodified	_LTAGVPNKVVE_					0	0	0		nc|ENSG00000204305|Q15109-4|AGER;nc|ENSG00000204305|Q15109-6|AGER	nc|ENSG00000204305|Q15109-4|AGER	nc|ENSG00000204305|Q15109-4|AGER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.2767333984375	2	563.826963	1125.63937	0.45254	0.00025515	-3.0504	-0.0017199	-2.5979	-0.0014648	563.8250387652141	82.296	0.73515	82.076	81.743	82.478	-0.22015					27	16	2	0	0	0	0.02478	1	9886	9886		47.96	1.9873	1	165190			48682	18659	33826	33878	54018	54018					0.08157970194565678
LTAGWMGSSPC	11	Unmodified	_LTAGWMGSSPC_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|5|1|sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|5|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7843627929688	2	555.241352	1108.46815	-0.8156	-0.00045286	0.26025	0.0001445	-0.55535	-0.00030835	555.2418957905536	69.269	0.46034	69.008	68.832	69.293	-0.26166					13	10	2	0	0	0	0.024752	1	8021	8021		32.812	0	1	65711	+		48683	37600	33827	33879	54019	54019					-0.08174426439904892
LTAIALFLW	9	Unmodified	_LTAIALFLW_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3104858398438	2	524.315503	1046.61645	-0.16754	-8.7844E-05	-3.5788	-0.0018764	-3.7463	-0.0019643	524.3135517336269	74.342	0.35291	74.067	73.867	74.22	-0.27573					13	8	2	0	0	0	0.024517	1	8745	8745		19.36	0	1	330740			48684	854	33828	33880	54020	54020					0.09500995867733764
LTAIALFLW	9	Unmodified	_LTAIALFLW_					0	0	0		ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-3|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.315503	1046.61645	0.27041	0.00014178	-4.395	-0.0023044	-4.1246	-0.0021626	524.3129617182957	74.281	0.40081	74.018	73.83	74.231	-0.26325	-0.02438	-0.00042518	NaN	19.36	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246200			48685	854	33828	33880							0.09500995867733764
LTAIHLNVT	9	Unmodified	_LTAIHLNVT_					0	0	0		nc|ENSG00000168621|P39905-5|GDNF;nc|ENSG00000168621|P39905-2|GDNF;nc|ENSG00000168621|P39905-4|GDNF;ENSG00000168621|ENST00000326524|GDNF;nc|ENSG00000168621|P39905-3|GDNF	nc|ENSG00000168621|P39905-5|GDNF	nc|ENSG00000168621|P39905-5|GDNF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.82989501953125	2	491.290017	980.565481	-0.47954	-0.00023559	1.1014	0.00054109	0.62182	0.00030549	491.2906156740717	66.513	0.75294	66.544	66.324	67.077	0.030106					29	20	2	0	0	0	0.024389	1	7843	7843		42.864	0	1	1576500			48686	7847	33829	33881	54021	54021					0.07442046822893644
LTAIITFAFN	10	Unmodified	_LTAIITFAFN_					0	0	0			REV__ENSG00000127412|ENST00000265310|TRPV5	REV__ENSG00000127412|ENST00000265310|TRPV5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.27197265625	2	555.813325	1109.6121	-0.093175	-5.1788E-05	0.48386	0.00026893	0.39068	0.00021715	555.8133383078036	95.161	0.77483	95.164	94.826	95.601	0.0033722					37	17	3	0	0	0	0.03519	1	12142	12142		64.207	11.271	1	445490	+		48687	22928	33830	33882	54022	54022					0.061674866541807205
LTAIRAQHS	9	Unmodified	_LTAIRAQHS_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MSMS	OPSCC_39_ClassI_Rep-1	1	498.7845458984375	2	498.78289	995.551228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.117	1	47.117	46.617	47.617	0								0	0	0	0.52604	1	4702	4702		49.442	2.6751	1		+		48688	36494	33831	33883	54023	54023					0.053273943946123836
LTAIVLGLA	9	Unmodified	_LTAIVLGLA_					0	0	0			REV__ENSG00000103375|ENST00000219660|AQP8	REV__ENSG00000103375|ENST00000219660|AQP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.7562561035156	2	435.786579	869.558604	0.25063	0.00010922	-0.67088	-0.00029236	-0.42026	-0.00018314	435.7863875970191	63.721	0.14633	63.47	63.372	63.518	-0.25141					5	3	2	0	0	0	0.024386	1	7423	7423		25.45	0	1	56078	+		48689	21381	33832	33884	54024	54024					0.11860733942319257
LTAKGPCPL	9	Unmodified	_LTAKGPCPL_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.26910400390625	2	450.254588	898.494624	-0.60527	-0.00027252	1.4572	0.0006561	0.85191	0.00038358	450.2552220655268	43.547	0.65184	43.547	43.296	43.948	0					26	17	2	0	0	0	0.022587	1	4142	4142		64.207	11.908	1	195440	+		48690	25244	33833	33885	54025	54025					0.04131630513722939
LTAKILEAL	9	Unmodified	_LTAKILEAL_					0	0	0		nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;PREX2|p.P1555Hfs*11|1|0.2|ENSG00000046889|chr8:68217674-68217674|C/-|frameshift_variant;ENSG00000046889|ENST00000288368|PREX2	nc|ENSG00000046889|Q70Z35-3|PREX2	nc|ENSG00000046889|Q70Z35-3|PREX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2886657714844	2	486.310418	970.606283	0.37308	0.00018144	1.7636	0.00085768	2.1367	0.0010391	486.31076980255153	58.682	0.25573	58.682	58.531	58.787	0					8	6	2	0	0	0	0.023454	1	6649	6649		93.195	16.421	1	113550			48691	16208	33834	33886	54026	54026					0.11980388142512766
LTALGPAQT	9	Unmodified	_LTALGPAQT_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.1701354980469	2	436.247818	870.481082	-0.59122	-0.00025792	0.78119	0.00034079	0.18998	8.2878E-05	436.24802472181796	27.312	0.6781	27.144	26.931	27.61	-0.16816					23	15	2	0	0	0	0.024477	1	1525	1525		35.618	8.9254	1	70412			48692	981	33835	33887	54027	54027					0.04066096006135922
LTALGPAQT	9	Unmodified	_LTALGPAQT_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	436.247818	870.481082	0.23045	0.00010053	0.27898	0.00012171	0.50943	0.00022224	436.2477135353141	27.481	0.54646	27.324	27.018	27.564	-0.15664	0.090195	-0.000198	NaN	27.882	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75647			48693	981	33835	33887							0.04066096006135922
LTALIKSDL	9	Unmodified	_LTALIKSDL_					0	0	0		nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1;ENSG00000162769|ENST00000366971|FLVCR1	nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1	nc|ENSG00000162769|Q9Y5Y0-2|FLVCR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.3006896972656	2	487.30005	972.585547	-0.74615	-0.0003636	0.30823	0.0001502	-0.43792	-0.0002134	487.3001809839185	58.41	1.3754	58.223	57.847	59.222	-0.18705					77	37	3	0	0	0	0.2508	1	6598	6598		82.241	1.7859	1	42410000			48694	6988	33836	33888	54028	54028					0.09815797762848888
LTALKRFL	8	Unmodified	_LTALKRFL_					0	0	0		sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.3136291503906	2	481.313295	960.612037	0.11656	5.61E-05	-0.3048	-0.00014671	-0.18825	-9.0605E-05	481.31301234736856	68.542	1.1699	68.561	67.967	69.137	0.018921					65	30	3	0	0	0	0.74904	1	8157	8157		63.306	7.8021	1	1711300			48695	37914	33837	33889	54029	54029					0.130155314448416
LTALSGPLSF	10	Unmodified	_LTALSGPLSF_					0	0	0		ENST00000315150.9_1_3:128809193-128809469:-|nuORF	ENST00000315150.9_1_3:128809193-128809469:-|nuORF	ENST00000315150.9_1_3:128809193-128809469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.27142333984375	2	503.2844	1004.55425	-0.34163	-0.00017194	-0.33723	-0.00016972	-0.67886	-0.00034166	503.2841433123676	56.834	0.54925	56.834	56.678	57.227	0					24	15	2	0	0	0	0.03519	1	6401	6401		40.778	0	1	788100			48696	12129	33838	33890	54030	54030					0.05215224728760859
LTAMQRQLKKH	11	Unmodified	_LTAMQRQLKKH_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.932861328125	3	451.930968	1352.77107	0.53731	0.00024282	3.2097	0.0014506	3.747	0.0016934	451.9323503655758	98.697	1.9732	98.697	97.898	99.871	0					179	45	5	0	0	0	1.0592	1	12726	12726		22.562	6.0317	1	1528000			48697	2852	33839	33891	54031	54031					0.1087987701066595
LTAMQRQLKKH	11	Unmodified	_LTAMQRQLKKH_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.9327697753906	3	451.930968	1352.77107	1.0842	0.00048999	2.8842	0.0013034	3.9684	0.0017934	451.9321198523276	96.984	2.193	96.984	95.823	98.016	-3.0518E-05					156	50	4	0	0	0	1.0648	1	12278	12278		21.032	1.4053	1	556020			48698	2852	33839	33891	54032	54032					0.1087987701066595
LTANLVCDKD	10	Unmodified	_LTANLVCDKD_					0	0	0			REV__ENSG00000123473|ENST00000371877|STIL	REV__ENSG00000123473|ENST00000371877|STIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.318115234375	2	546.273706	1090.53286	-1.0186	-0.00055644	3.2957	0.0018003	2.277	0.0012439	546.2761268292029	83.22	2.7502	83.22	81.464	84.215	0					121	64	4	0	0	0	0.03519	1	10167	10167		37.508	0	1	312110	+		48699	22700	33840	33892	54033	54033					-0.008785283622728457
LTAPDHGPGE	10	Unmodified	_LTAPDHGPGE_					0	0	0			REV__ENSG00000227059|ENST00000545940|ANHX	REV__ENSG00000227059|ENST00000545940|ANHX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.30609130859375	2	497.235439	992.456324	0.20336	0.00010112	3.2223	0.0016022	3.4256	0.0017033	497.2370319802928	22.185	1.643	21.996	21.15	22.793	-0.18894					45	34	2	0	0	0	0.03519	1	749	749		66.429	13.078	1	30799	+		48700	28880	33841	33893	54034	54034					-0.04020583867225014
LTAPHSSLW	9	Unmodified	_LTAPHSSLW_					0	0	0			REV__ENST00000416319.5_1_X:153737099-153744245:-|nuORF	REV__ENST00000416319.5_1_X:153737099-153744245:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.8085632324219	2	506.266542	1010.51853	-0.58194	-0.00029462	0.44446	0.00022502	-0.13748	-6.96E-05	506.26655014438467	57.837	0.46824	57.603	57.312	57.78	-0.23363					28	11	4	0	0	0	0.024381	1	6336	6336		55.504	4.1688	1	2036000	+		48701	32076	33842	33894	54035	54035					0.01369187271757255
LTAPLCLSKV	10	Carbamidomethyl (C)	_LTAPLC(Carbamidomethyl (C))LSKV_	LTAPLC(1)LSKV		LTAPLC(64)LSKV		0	1	0		ENST00000598636.1_1_19:47725000-47730056:-|nuORF	ENST00000598636.1_1_19:47725000-47730056:-|nuORF	ENST00000598636.1_1_19:47725000-47730056:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3179321289062	2	551.32046	1100.62637	-0.31998	-0.00017641	-3.0914	-0.0017044	-3.4114	-0.0018808	551.3186415840537	64.158	0.87326	63.931	63.624	64.497	-0.22773					63	21	4	0	0	0	0.75651	1	7313	7313		63.534	7.1001	1	6109900			48702	17475	33843	33895	54036	54036	233				0.08007815810810825
LTARKYTSMM	10	Unmodified	_LTARKYTSMM_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	601.2772827148438	2	601.307026	1200.5995	-0.35338	-0.00021249	-2.1774	-0.0013093	-2.5308	-0.0015218	601.3053889023279	69.371	0.78654	69.149	68.852	69.638	-0.22245					33	18	3	0	0	0	0.03519	1	8036	8036		52.937	17.318	1	1019000	+		48703	36597	33844	33896	54037	54037					0.007223839279731692
LTASCVIVQL	10	Unmodified	_LTASCVIVQL_					0	0	0			REV__nc|ENSG00000079785|Q92499-3|DDX1	REV__nc|ENSG00000079785|Q92499-3|DDX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.8358764648438	2	523.79936	1045.58417	-1.2628	-0.00066146	0.83362	0.00043665	-0.42919	-0.00022481	523.7998279339602	60.767	0.37505	60.767	60.546	60.921	0					12	9	2	0	0	0	0.03519	1	6994	6994		47.657	0	1	76418	+		48704	20642	33845	33897	54038	54038					0.06319840402443333
LTATPAVKL	9	Unmodified	_LTATPAVKL_					0	0	0			REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2897033691406	2	457.289485	912.564418	-0.0041022	-1.8759E-06	0.0010965	5.0141E-07	-0.0030057	-1.3745E-06	457.2894126763778	85.973	1.9816	85.927	85.034	87.016	-0.045097					90	46	3	0	0	0	0.033448	2	10763	10763;10776		138.83	1.4446	1	789420	+		48705	35115	33846	33898	54039;54040	54039					0.10463832454001931
LTATPAVKL	9	Unmodified	_LTATPAVKL_					0	0	0			REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	457.289794921875	2	457.289485	912.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.02	1	86.044	85.544	86.544	0.023666								0	0	0	0.03995	1	10724	10724		113.41	10.638	1		+		48706	35115	33846	33898	54041	54041					0.10463832454001931
LTATPAVKL	9	Unmodified	_LTATPAVKL_					0	0	0			REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	457.289485	912.564418	-0.0041022	-1.8759E-06	0.0010965	5.0141E-07	-0.0030057	-1.3745E-06	457.2894126763778	85.973	1.9816	85.927	85.034	87.016	-0.045097	0.12165	0.0002155	NaN	138.83	90	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789420	+		48707	35115	33846	33898							0.10463832454001931
LTATPAVKL	9	Unmodified	_LTATPAVKL_					0	0	0			REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.289485	912.564418	0.32531	0.00014876	-0.22855	-0.00010451	0.096758	4.4246E-05	457.2891996649971	85.912	0.86438	85.716	85.469	86.333	-0.19508	-0.089359	5.4687E-06	NaN	138.83	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150780	+		48708	35115	33846	33898							0.10463832454001931
LTATPAVKL	9	Unmodified	_LTATPAVKL_					0	0	0			REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.289485	912.564418	0.64732	0.00029601	-0.66533	-0.00030425	-0.018011	-8.2362E-06	457.28903499435086	85.952	1.0772	85.802	85.41	86.487	-0.14967	-0.0037046	-0.00039401	NaN	138.83	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205030	+		48709	35115	33846	33898							0.10463832454001931
LTATPAVKL	9	Unmodified	_LTATPAVKL_					0	0	0			REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	REV__ENST00000559212.1_1_15:69973631-69988065:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.289485	912.564418	0.38365	0.00017544	-0.48793	-0.00022313	-0.10428	-4.7688E-05	457.28915223467936	85.915	0.94367	85.777	85.368	86.312	-0.13734	-0.028588	-0.00023176	NaN	138.83	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253240	+		48710	35115	33846	33898							0.10463832454001931
LTATYGLRGL	10	Unmodified	_LTATYGLRGL_					0	0	0			REV__nc|ENSG00000166546|Q3B7T3-3|BEAN1	REV__nc|ENSG00000166546|Q3B7T3-3|BEAN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8080444335938	2	532.808574	1063.60259	0.47364	0.00025236	1.2135	0.00064657	1.6871	0.00089893	532.808854512292	71.179	1.5589	70.89	70.459	72.018	-0.28858					122	39	6	0	0	0	1.0122	1	8591	8591		44.377	5.1244	1	3231400	+		48711	36890	33847	33899	54042	54042					0.07333718368658992
LTAVKLESI	9	Unmodified	_LTAVKLESI_					0	0	0		nc|ENSG00000261239|Q6NSI1|ANKRD26P1	nc|ENSG00000261239|Q6NSI1|ANKRD26P1	nc|ENSG00000261239|Q6NSI1|ANKRD26P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2815856933594	2	487.30005	972.585547	-0.94537	-0.00046068	1.6431	0.00080067	0.6977	0.00033999	487.30061557922664	64.793	0.93395	64.831	64.555	65.489	0.037384					47	25	3	0	0	0	0.024397	1	7617	7617		39.253	11.371	1	973070			48712	18783	33848	33900	54043	54043					0.09815797762848888
LTAVLLQLG	9	Unmodified	_LTAVLLQLG_					0	0	0			REV__ENSG00000105676|ENST00000535612|ARMC6	REV__ENSG00000105676|ENST00000535612|ARMC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.27874755859375	2	464.29731	926.580068	-0.56735	-0.00026342	0.62188	0.00028874	0.05453	2.5318E-05	464.2974032124796	81.317	0.73402	81.317	81.017	81.751	0					36	17	3	0	0	0	0.023817	1	10107	10107		51.335	0	1	503410	+		48713	21554	33849	33901	54044	54044					0.11384118971045609
LTAVLRAYF	9	Unmodified	_LTAVLRAYF_					0	0	0			REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.2750244140625	2	527.30821	1052.60187	0.13487	7.1118E-05	-4.4887	-0.0023669	-4.3539	-0.0022958	527.3055640579166	23.984	0.36149	24.06	23.866	24.228	0.076241					11	7	2	0	0	0	0.02435	1	974	974		42.396	5.237	1	28244	+		48714	37760	33850	33902	54045	54045					0.07766923719600527
LTAVYGLLR	9	Unmodified	_LTAVYGLLR_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.30828857421875	2	503.30821	1004.60187	-1.0085	-0.00050759	1.0762	0.00054166	0.067696	3.4072E-05	503.30863071549925	65.034	1.2576	65.034	64.617	65.875	0					85	34	4	0	0	0	0.59099	1	7693	7693		53.351	0.41475	1	5558600	+		48715	19890	33851	33903	54046	54046					0.09974923719607887
LTAYLDYME	9	Unmodified	_LTAYLDYME_					0	0	0		nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2;ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2	nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.75732421875	2	559.757358	1117.50016	0.12055	6.7476E-05	0.10853	6.075E-05	0.22907	0.00012823	559.757094094555	71.69	0.81389	71.415	71.056	71.87	-0.2751					44	19	3	0	0	0	0.83071	1	8370	8370		37.159	0	1	1067800			48716	18812	33852	33904	54047	54047					-0.053887354851212876
LTCIILWI	8	Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))IILWI_	LTC(1)IILWI		LTC(78)IILWI		0	1	0		ENST00000423402.5_1_2:70310792-70314961:-|nuORF;ENST00000596028.5_1_2:70310792-70315777:-|nuORF	ENST00000423402.5_1_2:70310792-70314961:-|nuORF	ENST00000423402.5_1_2:70310792-70314961:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2999267578125	2	516.301539	1030.58852	-0.36416	-0.00018802	-3.2445	-0.0016751	-3.6086	-0.0018631	516.2999017348479	104.18	1.4423	104.18	103.81	105.25	-0.0032196					106	40	3	0	0	0	0.58212	1	13276	13276		77.944	6.5659	1	7489400			48717	14022	33853	33905	54048	54048	190				0.07445349616023123
LTCILMLSL	9	Unmodified	_LTCILMLSL_					0	0	0			REV__ENSG00000110077|ENST00000528851|MS4A6A	REV__ENSG00000110077|ENST00000528851|MS4A6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7890930175781	2	503.787407	1005.56026	-0.49761	-0.00025069	3.9524	0.0019912	3.4548	0.0017405	503.78921619644194	27.798	1.2189	27.879	27.608	28.827	0.081291					57	29	3	0	0	0	0.40179	1	1508	1508		65.803	11.027	1	1031200	+		48718	21837	33854	33906	54049	54049					0.057702836444263994
LTCILMLSL	9	Unmodified	_LTCILMLSL_					0	0	0			REV__ENSG00000110077|ENST00000528851|MS4A6A	REV__ENSG00000110077|ENST00000528851|MS4A6A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	503.787407	1005.56026	-0.80314	-0.00040461	4.4299	0.0022317	3.6268	0.0018271	503.7894810651975	28.03	0.88196	28.03	27.689	28.571	0	0.061732	0.00023151	NaN	65.803	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	952200	+		48719	21837	33854	33906							0.057702836444263994
LTCILMLSL	9	Unmodified	_LTCILMLSL_					0	0	0			REV__ENSG00000110077|ENST00000528851|MS4A6A	REV__ENSG00000110077|ENST00000528851|MS4A6A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.787407	1005.56026	-0.57246	-0.0002884	4.101	0.002066	3.5285	0.0017776	503.7892421251196	28	0.97326	27.996	27.692	28.665	-0.0042019	0.027273	-9.9901E-05	NaN	65.803	49	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981490	+		48720	21837	33854	33906							0.057702836444263994
LTCILMLSL	9	Unmodified	_LTCILMLSL_					0	0	0			REV__ENSG00000110077|ENST00000528851|MS4A6A	REV__ENSG00000110077|ENST00000528851|MS4A6A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	503.787407	1005.56026	-0.49761	-0.00025069	3.9524	0.0019912	3.4548	0.0017405	503.78921619644194	27.798	1.2189	27.879	27.608	28.827	0.081291	-0.089005	-0.00024961	NaN	65.803	57	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1031200	+		48721	21837	33854	33906							0.057702836444263994
LTCITHLTV	9	Unmodified	_LTCITHLTV_					0	0	0		OR2L8|p.S241I|1|0.31|ENSG00000279263|chr1:247949579-247949579|G/T|missense_variant	OR2L8|p.S241I|1|0.31|ENSG00000279263|chr1:247949579-247949579|G/T|missense_variant	OR2L8|p.S241I|1|0.31|ENSG00000279263|chr1:247949579-247949579|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.77850341796875	2	500.778428	999.542302	-0.020694	-1.0363E-05	-0.032434	-1.6242E-05	-0.053128	-2.6606E-05	500.7782086902758	69.138	2.5003	69.138	67.528	70.029	0					131	64	3	0	0	0	0.85329	1	8288	8288		35.618	3.6634	1	3048400			48722	18911	33855	33907	54050	54050					0.04251284713916448
LTCLFLFLN	9	Unmodified	_LTCLFLFLN_					0	0	0		ENST00000404735.1_1_2:55459884-55460500:+|nuORF	ENST00000404735.1_1_2:55459884-55460500:+|nuORF	ENST00000404735.1_1_2:55459884-55460500:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2999267578125	2	542.298996	1082.58344	-1.3473	-0.00073064	3.4988	0.0018974	2.1515	0.0011668	542.3008640946439	64.767	1.7211	64.767	64.384	66.105	0					87	46	2	0	0	0	0.50848	1	7662	7662		58.782	5.693	1	21949000			48723	13705	33856	33908	54051	54051					0.045450457533888766
LTCLFLFLN	9	Unmodified	_LTCLFLFLN_					0	0	0		ENST00000404735.1_1_2:55459884-55460500:+|nuORF	ENST00000404735.1_1_2:55459884-55460500:+|nuORF	ENST00000404735.1_1_2:55459884-55460500:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7793579101562	2	542.298996	1082.58344	-0.71508	-0.00038779	4.2433	0.0023011	3.5282	0.0019133	542.3025686136973	35.336	0.42771	35.124	34.886	35.314	-0.21246					15	10	2	0	0	0	0.024457	1	2675	2675		37.159	0	1	70316			48724	13705	33856	33908	54052	54052					0.045450457533888766
LTCLIKLV	8	Unmodified	_LTCLIKLV_					0	0	0			REV__ENST00000373314.7_1_9:130267625-130268042:-|nuORF	REV__ENST00000373314.7_1_9:130267625-130268042:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.7743225097656	2	451.790807	901.56706	-0.16861	-7.6178E-05	3.5258	0.0015929	3.3572	0.0015167	451.792324935681	21.855	0.57944	21.664	21.226	21.806	-0.19072					14	11	2	0	0	0	0.027866	1	659	659		50.025	2.1089	1	17764	+		48725	31249	33857	33909	54053	54053					0.11233964587302125
LTCPPRLNSLG	11	Unmodified	_LTCPPRLNSLG_					0	0	0		ENST00000584667.5_1_17:73702772-73703135:+|nuORF	ENST00000584667.5_1_17:73702772-73703135:+|nuORF	ENST00000584667.5_1_17:73702772-73703135:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.8185424804688	2	585.818615	1169.62268	0.20688	0.00012119	-0.72014	-0.00042187	-0.51326	-0.00030068	585.8181857204193	18.923	2.876	18.767	18.495	21.371	-0.15637					102	58	4	0	0	0	1.0075	1	410	410		35.152	2.3396	1	2198100			48726	17211	33858	33910	54054	54054					0.044651460369323104
LTCPQELII	9	Unmodified	_LTCPQELII_					0	0	0			REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF	REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.284423828125	2	515.286085	1028.55762	-0.78762	-0.00040585	-2.7813	-0.0014332	-3.5689	-0.001839	515.2845123020854	82.345	1.3976	82.371	81.859	83.257	0.025711					61	32	3	0	0	0	0.2101	1	10212	10212		87.696	12.653	1	1626900	+		48727	32168	33859	33911	54055	54055					0.044481515111101544
LTCSEAGVYVL	11	Unmodified	_LTCSEAGVYVL_					0	0	0		nc|ENSG00000100012|Q9UDX4-3|SEC14L3;nc|ENSG00000100012|Q9UDX4-2|SEC14L3;ENSG00000100012|ENST00000215812|SEC14L3	nc|ENSG00000100012|Q9UDX4-3|SEC14L3	nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MSMS	OPSCC_40_ClassI_Rep-3	6	577.7926635742188	2	577.791732	1153.56891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.301	1	99.133	98.633	99.633	-0.16862								0	0	0	1.0281	1	12295	12295		42.396	0	1				48728	2115	33860	33912	54056	54056					-0.001730711853952016
LTCSLTPLGL	10	Unmodified	_LTCSLTPLGL_					0	0	0		ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.2837219238281	2	509.286085	1016.55762	-0.33127	-0.00016871	-3.0056	-0.0015307	-3.3368	-0.0016994	509.2844641515761	70.07	0.79088	69.803	69.368	70.159	-0.26725					68	18	5	0	0	0	0.65054	1	8139	8139		71.296	0	1	2629000			48729	1068	33861	33913	54057	54057					0.050001515111148365
LTDAFPSSLFL	11	Unmodified	_LTDAFPSSLFL_					0	0	0			REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.21826171875	3	404.216657	1209.62814	-0.029885	-1.208E-05	3.9927	0.0016139	3.9628	0.0016018	404.21827196086645	57.238	1.0137	57.071	56.751	57.764	-0.1672					88	26	5	0	0	0	0.92638	1	6223	6223		50.034	0	1	13924000	+		48730	35939	33862	33914	54058	54058					0.031711481004322195
LTDAFPSSLFL	11	Unmodified	_LTDAFPSSLFL_					0	0	0			REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.216657	1209.62814	0.95063	0.00038426	3.2628	0.0013189	4.2134	0.0017031	404.2178060779365	57.199	0.66315	57.199	56.904	57.567	0	0.076588	-0.00045133	NaN	50.034	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1337000	+		48731	35939	33862	33914							0.031711481004322195
LTDAFPSSLFL	11	Unmodified	_LTDAFPSSLFL_					0	0	0			REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	404.216657	1209.62814	0.91594	0.00037024	3.2219	0.0013023	4.1378	0.0016726	404.21781231750003	57.337	0.71034	57.164	56.9	57.61	-0.17303	0.041966	-0.00050093	NaN	50.034	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1068400	+		48732	35939	33862	33914							0.031711481004322195
LTDAFPSSLFL	11	Unmodified	_LTDAFPSSLFL_					0	0	0			REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	REV__ENST00000606961.1_1_6:33665432-33665861:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	404.216657	1209.62814	1.8173	0.00073459	2.2964	0.00092823	4.1137	0.0016628	404.2174750448741	57.007	0.61916	57.102	56.846	57.465	0.095306	-0.019815	-0.0016232	NaN	50.034	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037300	+		48733	35939	33862	33914							0.031711481004322195
LTDAKYKF	8	Unmodified	_LTDAKYKF_					0	0	0			REV__ENSG00000111361|ENST00000424014|EIF2B1	REV__ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2708740234375	2	493.271293	984.528032	-0.76709	-0.00037839	0.48576	0.00023961	-0.28133	-0.00013877	493.27137735145527	64.627	1.0311	64.393	64.021	65.052	-0.2345					63	25	4	0	0	0	0.6248	1	7373	7373		73.975	13.003	1	3071700	+		48734	21913	33863	33915	54059	54059					0.03514955557284338
LTDAKYKF	8	Unmodified	_LTDAKYKF_					0	0	0			REV__ENSG00000111361|ENST00000424014|EIF2B1	REV__ENSG00000111361|ENST00000424014|EIF2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.271240234375	2	493.271293	984.528032	-0.23713	-0.00011697	-0.070354	-3.4704E-05	-0.30748	-0.00015167	493.27110022279084	64.6	0.91795	64.398	64.105	65.023	-0.20254					59	22	4	0	0	0	0.6248	1	7376	7376		73.975	2.0973	1	2965200	+		48735	21913	33863	33915	54060	54060					0.03514955557284338
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2835693359375	2	562.285128	1122.5557	-0.2899	-0.00016301	-0.70735	-0.00039773	-0.99726	-0.00056074	562.2846911597816	62.359	0.62318	62.146	61.774	62.398	-0.21375					41	14	4	0	0	0	0.014918	3	7025	7004;7013;7025		200.16	88.509	1	10754000			48736	3367	33864	33916	54061;54062;54063	54063					-0.0006718597312556085
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2844848632812	2	562.285128	1122.5557	-0.82719	-0.00046512	0.13312	7.485E-05	-0.69407	-0.00039027	562.2851735796996	62.308	0.6919	62.13	61.691	62.383	-0.17782					51	13	5	0	0	0	0.014454	4	7032	6998;7006;7018;7032		200.16	100.78	1	10180000			48737	3367	33864	33916	54064;54065;54066;54067	54067					-0.0006718597312556085
LTDDDLLRY	9	Unmodified	_LTDDDLLRY_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2804565429688	2	562.285128	1122.5557	-0.57346	-0.00032245	-0.37141	-0.00020884	-0.94487	-0.00053129	562.284894689865	62.511	0.62384	62.253	61.936	62.56	-0.25824					45	17	4	0	0	0	0.013065	3	7005	7005;7013;7025		171.53	72.157	1	9759600			48738	3367	33864	33916	54068;54069;54070	54068					-0.0006718597312556085
LTDDELFQY	9	Unmodified	_LTDDELFQY_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.2647705078125	2	572.263862	1142.51317	0.46668	0.00026707	-0.57938	-0.00033156	-0.1127	-6.4495E-05	572.2634160440527	76.935	0.65884	76.667	76.338	76.997	-0.26807					32	15	3	0	0	0	0.20967	1	9131	9131		87.754	18.967	1	549890			48739	8176	33865	33917	54071	54071					-0.05238581101366435
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000466987.1_1_3:184021130-184021370:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	612.798828125	2	612.798403	1223.58225	-1.4023	-0.00085934	0.87982	0.00053915	-0.5225	-0.00032019	612.799032828803	58.678	2.0538	58.49	58.136	60.19	-0.18795					164	51	4	0	0	0	0.0081025	11	6485	6426;6437;6449;6461;6473;6485;6497;6511;6524;6537;6553		172.25	73.619	1	79326000			48740	8534	33866	33918	54072;54073;54074;54075;54076;54077;54078;54079;54080;54081;54082	54077					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000466987.1_1_3:184021130-184021370:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	612.798583984375	2	612.798403	1223.58225	-0.19035	-0.00011664	0.0067412	4.131E-06	-0.1836	-0.00011251	612.7984300369403	58.581	2.0456	58.399	58.065	60.111	-0.18134					164	51	4	0	0	0	0.024725	12	6419	6419;6430;6442;6454;6466;6479;6491;6505;6517;6528;6541;6559		159.28	65.705	1	83841000			48741	8534	33866	33918	54083;54084;54085;54086;54087;54088;54089;54090;54091;54092;54093;54094	54083					-0.020594970817910507
LTDDGNKWLY	10	Unmodified	_LTDDGNKWLY_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000466987.1_1_3:184021130-184021370:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	612.7994384765625	2	612.798403	1223.58225	0.39216	0.00024031	-0.86007	-0.00052705	-0.46791	-0.00028674	612.7979503051783	58.723	2.0545	58.481	58.129	60.183	-0.24165					170	51	5	0	0	0	0.01976	12	6516	6419;6431;6443;6455;6467;6479;6493;6506;6516;6529;6543;6555		163.15	63.749	1	78803000			48742	8534	33866	33918	54095;54096;54097;54098;54099;54100;54101;54102;54103;54104;54105;54106	54103					-0.020594970817910507
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.7718505859375	2	541.771854	1081.52915	-0.43167	-0.00023387	0.16565	8.9746E-05	-0.26601	-0.00014412	541.7718526473309	42.421	0.95343	42.298	41.998	42.952	-0.12299					83	24	5	0	0	0	0.013442	3	3835	3811;3823;3835		218.73	89.048	1	4417400			48743	3892	33867	33919	54107;54108;54109	54109					-0.008348748644721127
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.7720336914062	2	541.771854	1081.52915	-0.6326	-0.00034272	0.40295	0.00021831	-0.22964	-0.00012442	541.7719759192706	42.591	0.95271	42.36	42.006	42.959	-0.23186					76	24	5	0	0	0	0.013442	3	3852	3827;3839;3852		218.73	75.623	1	4614600			48744	3892	33867	33919	54110;54111;54112	54112					-0.008348748644721127
LTDDKLSQY	9	Unmodified	_LTDDKLSQY_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.7720336914062	2	541.771854	1081.52915	-1.1837	-0.00064131	0.70048	0.0003795	-0.48325	-0.00026181	541.7721565455388	42.618	1.1283	42.392	41.969	43.097	-0.22597					70	29	4	0	0	0	0.016953	2	3827	3827;3845		213.85	75.025	1	4596200			48745	3892	33867	33919	54113;54114	54113					-0.008348748644721127
LTDEICNMD	9	Unmodified	_LTDEICNMD_					0	0	0			REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2625732421875	2	527.215	1052.41545	-0.14352	-7.5665E-05	0.43055	0.00022699	0.28704	0.00015133	527.2152756009453	55.515	1.7653	55.515	54.623	56.388	0					61	49	2	0	0	0	0.024323	1	6209	6209		35.618	8.9254	1	270250	+		48746	28660	33868	33920	54115	54115					-0.10866429293378133
LTDEPFSRQD	10	Unmodified	_LTDEPFSRQD_					0	0	0		nc|ENSG00000100023|Q13356-2|PPIL2;ENSG00000100023|ENST00000398831|PPIL2;ENST00000417788.5_1_22:22024636-22041216:+|nuORF	nc|ENSG00000100023|Q13356-2|PPIL2	nc|ENSG00000100023|Q13356-2|PPIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.2852172851562	2	604.283117	1206.55168	-0.72873	-0.00044036	4.0102	0.0024233	3.2815	0.001983	604.2854321515616	62.154	0.65923	61.94	61.624	62.283	-0.21375					50	16	4	0	0	0	0.6365	1	6973	6973		72.879	2.063	1	3222700			48747	2117	33869	33921	54116	54116					-0.04333275466865416
LTDFDIRFY	9	Unmodified	_LTDFDIRFY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.2958374023438	2	595.298039	1188.58152	-0.11561	-6.8823E-05	0.64459	0.00038372	0.52898	0.0003149	595.2983364096058	77.319	0.54141	77.057	76.771	77.313	-0.26202					33	13	3	0	0	0	0.015064	3	9178	9178;9189;9203		190.52	68.551	1	879850			48748	1435	33870	33922	54117;54118;54119	54117					-0.00522291730840152
LTDFDIRFY	9	Unmodified	_LTDFDIRFY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.2968139648438	2	595.298039	1188.58152	0.067431	4.0142E-05	0.60668	0.00036115	0.67411	0.0004013	595.298193463101	77.245	0.56934	77.002	76.75	77.32	-0.24232					31	14	3	0	0	0	0.014454	3	9206	9189;9195;9206		185.55	92.354	1	853230			48749	1435	33870	33922	54120;54121;54122	54122					-0.00522291730840152
LTDFDIRFY	9	Unmodified	_LTDFDIRFY_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.2963256835938	2	595.298039	1188.58152	-0.78713	-0.00046858	1.4786	0.0008802	0.69146	0.00041163	595.2987242686004	77.093	0.52438	76.931	76.658	77.183	-0.16196					30	12	4	0	0	0	0.020687	3	9150	9150;9160;9171		148.99	66.746	1	981270			48750	1435	33870	33922	54123;54124;54125	54123					-0.00522291730840152
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.2930908203125	2	593.292953	1184.57135	0.42102	0.00024979	-0.63472	-0.00037658	-0.21371	-0.00012679	593.2926289239027	59.636	1.3362	59.439	59.05	60.387	-0.19742					81	31	5	0	0	0	0.030064	5	6587	6578;6587;6599;6612;6627		141.52	64.203	1	8280000			48751	9435	33871	33923	54126;54127;54128;54129;54130	54127					-0.013548994561006111
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.2931518554688	2	593.292953	1184.57135	-0.14246	-8.4522E-05	0.035577	2.1108E-05	-0.10689	-6.3415E-05	593.2930240395945	59.498	1.3255	59.319	59.034	60.36	-0.17862					85	33	5	0	0	0	0.016542	4	6580	6568;6580;6592;6606		154.12	76.801	1	8221100			48752	9435	33871	33923	54131;54132;54133;54134	54132					-0.013548994561006111
LTDFIREEY	9	Unmodified	_LTDFIREEY_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.2932739257812	2	593.292953	1184.57135	-0.34897	-0.00020704	0.069887	4.1463E-05	-0.27908	-0.00016558	593.2930215975507	59.683	1.4587	59.434	59.01	60.469	-0.24842					86	36	4	0	0	0	0.030064	4	6581	6572;6581;6593;6607		141.52	72.734	1	8514100			48753	9435	33871	33923	54135;54136;54137;54138	54136					-0.013548994561006111
LTDFKQGTLN	10	Unmodified	_LTDFKQGTLN_					0	0	0			REV__sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	REV__sp|P03233|CVC2_EBVB9Capsidvertexcomponent2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=CVC2PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8026733398438	2	568.800946	1135.58734	0.36649	0.00020846	3.6297	0.0020646	3.9962	0.0022731	568.8025662394693	97.221	1.5183	97.23	96.795	98.313	0.0089111					90	34	4	0	0	0	0.64538	1	12348	12348		71.877	9.7701	1	1306700	+		48754	37552	33872	33924	54139	54139					0.024968067808231353
LTDFQKAVY	9	Unmodified	_LTDFQKAVY_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant;ERCC6L2|p.C634Vfs*9|1|0.07|ENSG00000182150|chr9:95955933-95955933|T/-|frameshift_variant;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.7871704101562	2	542.787307	1083.56006	0.26124	0.0001418	-0.65019	-0.00035291	-0.38895	-0.00021112	542.7868794146171	51.569	0.72445	51.385	50.981	51.705	-0.18404					39	18	3	0	0	0	0.51687	1	5311	5311		58.23	21.071	1	1304300			48755	9104	33873	33925	54140	54140					0.02162323240418118
LTDHHESLD	9	Unmodified	_LTDHHESLD_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7902221679688	2	533.743628	1065.4727	0.46576	0.0002486	-2.3199	-0.0012383	-1.8542	-0.00098965	533.7413930909521	64.129	0.21307	64.129	64.062	64.275	0					8	5	2	0	0	0	0.024436	1	7560	7560		38.806	8.3025	1	61679			48756	18410	33874	33926	54141	54141					-0.0574150270113023
LTDIRSTLI	9	Unmodified	_LTDIRSTLI_					0	0	0		nc|ENSG00000204613|Q9UDY6-2|TRIM10;ENSG00000204613|ENST00000449742|TRIM10	nc|ENSG00000204613|Q9UDY6-2|TRIM10	nc|ENSG00000204613|Q9UDY6-2|TRIM10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.271484375	2	516.308406	1030.60226	-1.4519	-0.00074965	-1.7611	-0.00090925	-3.213	-0.0016589	516.3082860670166	48.918	0.50861	48.992	48.807	49.316	0.074192					15	13	2	0	0	0	0.024319	1	4954	4954		66.429	5.4573	1	130580			48757	10359	33875	33927	54142	54142					0.0881829864881638
LTDISLIQI	9	Unmodified	_LTDISLIQI_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2930603027344	2	508.305332	1014.59611	-0.52164	-0.00026515	2.0322	0.001033	1.5106	0.00076783	508.3056313029173	50.565	0.29583	50.565	50.411	50.707	0					17	8	3	0	0	0	0.024374	1	5299	5299		40.778	19.831	1	349070	+		48758	37281	33876	33928	54143	54143					0.08939780417290422
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.3106079101562	2	569.311146	1136.60774	-0.47301	-0.00026929	-0.12014	-6.84E-05	-0.59315	-0.00033769	569.311076489677	52.113	1.1548	51.994	51.646	52.8	-0.11876					97	29	6	0	0	0	0.0001986	5	5410	5378;5387;5398;5410;5423		195.57	81.664	1	21796000			48759	7717	33877	33929	54144;54145;54146;54147;54148	54147					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.3112182617188	2	569.311146	1136.60774	-1.1385	-0.00064814	0.43371	0.00024692	-0.70475	-0.00040122	569.3113791940626	52.376	1.1163	52.107	51.795	52.912	-0.26903					89	28	5	0	0	0	1.499E-05	5	5439	5405;5416;5427;5439;5451		213.85	90.3	1	22159000			48760	7717	33877	33929	54149;54150;54151;54152;54153	54152					0.04489977440630355
LTDITKGVQY	10	Unmodified	_LTDITKGVQY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.3115844726562	2	569.311146	1136.60774	-0.083121	-4.7322E-05	-0.63953	-0.00036409	-0.72266	-0.00041142	569.3107748648443	52.264	1.6937	52.08	51.741	53.435	-0.18404					106	43	6	0	0	0	0.00015509	4	5393	5393;5403;5415;5427		199.89	81.664	1	22238000			48761	7717	33877	33929	54154;54155;54156;54157	54154					0.04489977440630355
LTDIVRHRKT	10	Unmodified	_LTDIVRHRKT_					0	0	0		ENST00000477325.1_1_3:39449144-39450287:+|nuORF	ENST00000477325.1_1_3:39449144-39450287:+|nuORF	ENST00000477325.1_1_3:39449144-39450287:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.22747802734375	3	413.582444	1237.7255	1.4804	0.00061225	2.0648	0.00085398	3.5452	0.0014662	413.5834151839775	36.412	1.1757	36.213	35.91	37.086	-0.19829					45	29	2	0	0	0	0.03519	1	2905	2905		10.587	0.4829	1	71949			48762	15111	33878	33930	54158	54158					0.11614974819917734
LTDKGNAPP	9	Unmodified	_LTDKGNAPP_					0	0	0		ENST00000486749.5_1_12:8083049-8088630:-|nuORF;ENSG00000059804|ENST00000075120|SLC2A3;ENST00000476634.1_1_12:8085578-8088630:-|nuORF	ENST00000486749.5_1_12:8083049-8088630:-|nuORF	ENST00000486749.5_1_12:8083049-8088630:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.7428283691406	2	456.742899	911.471246	-0.22787	-0.00010408	-0.041069	-1.8758E-05	-0.26894	-0.00012283	456.7427190999713	45.905	0.77271	45.644	45.35	46.123	-0.26118					48	20	3	0	0	0	0.39228	1	4381	4381		66.429	0.6261	1	2078300			48763	1227	33879	33931	54159	54159					0.011969080007588673
LTDLGLPGGL	10	Unmodified	_LTDLGLPGGL_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3056335449219	2	478.276575	954.538597	0.20409	9.7612E-05	-4.4612	-0.0021337	-4.2571	-0.0020361	478.275124258485	32.36	0.4673	32.36	31.989	32.457	0					16	11	2	0	0	0	0.03519	1	2219	2219		44.117	3.3386	1	145660	+		48764	19929	33880	33932	54160	54160					0.05950938211731227
LTDLLLNTL	9	Unmodified	_LTDLLLNTL_					0	0	0			REV__ENST00000464935.6_1_X:2179666-2184977:-|nuORF	REV__ENST00000464935.6_1_X:2179666-2184977:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3057861328125	2	508.305332	1014.59611	0.21018	0.00010684	-0.68515	-0.00034827	-0.47497	-0.00024143	508.30486920656153	98.254	0.71362	98.264	97.979	98.693	0.010231					41	16	3	0	0	0	0.45795	1	12521	12521		62.107	1.9892	1	358910	+		48765	26317	33881	33933	54161	54161					0.08939780417290422
LTDLLLNTL	9	Unmodified	_LTDLLLNTL_					0	0	0			REV__ENST00000464935.6_1_X:2179666-2184977:-|nuORF	REV__ENST00000464935.6_1_X:2179666-2184977:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.3053283691406	2	508.305332	1014.59611	1.0561	0.00053682	-1.4285	-0.00072613	-0.37242	-0.0001893	508.3044793341435	98.299	0.80177	98.175	97.947	98.749	-0.12413					35	18	2	0	0	0	0.2101	1	12185	12185		87.696	5.4559	1	556590	+		48766	26317	33881	33933	54162	54162					0.08939780417290422
LTDLNTYLN	9	Unmodified	_LTDLNTYLN_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.774169921875	2	533.774396	1065.53424	-1.1982	-0.00063957	1.4537	0.00077596	0.25553	0.00013639	533.7748788619867	84.263	1.4675	84.19	83.83	85.298	-0.072769					91	34	4	0	0	0	0.057894	1	10503	10503		125.81	24.213	1	2577800			48767	2143	33882	33934	54163	54163					0.004094289981367183
LTDLNTYLN	9	Unmodified	_LTDLNTYLN_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.774658203125	2	533.774396	1065.53424	-0.94614	-0.00050503	1.3902	0.00074208	0.4441	0.00023705	533.7747907920686	84.171	2.0904	84.198	83.814	85.905	0.026558					117	49	4	0	0	0	0.11092	1	10477	10477		108.09	17.718	1	2621900			48768	2143	33882	33934	54164	54164					0.004094289981367183
LTDLNTYLN	9	Unmodified	_LTDLNTYLN_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7748413085938	2	533.774396	1065.53424	0.095442	5.0945E-05	-0.37328	-0.00019925	-0.27783	-0.0001483	533.7741873129576	84.256	0.94321	84.118	83.845	84.788	-0.13789					53	21	3	0	0	0	0.15366	1	10180	10180		98.629	13.469	1	377120			48769	2143	33882	33934	54165	54165					0.004094289981367183
LTDLNTYLN	9	Unmodified	_LTDLNTYLN_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	533.774396	1065.53424	-0.60224	-0.00032146	1.036	0.00055302	0.43381	0.00023155	533.7745829780545	84.276	1.5497	84.276	83.823	85.372	0	0.099501	0.00041647	NaN	125.81	98	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2544700			48770	2143	33882	33934							0.004094289981367183
LTDLNTYLN	9	Unmodified	_LTDLNTYLN_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.774396	1065.53424	0.32238	0.00017208	-0.038752	-2.0685E-05	0.28362	0.00015139	533.7742238365828	84.302	0.85298	84.099	83.82	84.673	-0.20329	-0.077377	-0.00073094	NaN	125.81	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315480			48771	2143	33882	33934							0.004094289981367183
LTDLQWGLN	9	Unmodified	_LTDLQWGLN_					0	0	0			REV__ENST00000433288.2_1_1:151922871-151923141:-|nuORF	REV__ENST00000433288.2_1_1:151922871-151923141:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7303466796875	2	530.277106	1058.53966	-0.028919	-1.5335E-05	1.363	0.00072277	1.3341	0.00070744	530.2771550291794	50.347	0.96849	50.242	49.972	50.94	-0.10558					45	25	3	0	0	0	0.024323	1	5197	5197		27.882	0	1	1167600	+		48772	32399	33883	33935	54166	54166					0.01273152580643
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2482299804688	2	534.248212	1066.48187	-0.21105	-0.00011275	0.20859	0.00011144	-0.0024572	-1.3127E-06	534.2480352533769	63.021	1.3551	62.8	62.518	63.873	-0.22097					62	34	3	0	0	0	0.020687	2	7106	7093;7106		148.99	39.292	1	5873000			48773	8454	33884	33936	54167;54168	54168					-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.248046875	2	534.248212	1066.48187	-0.76833	-0.00041048	0.4071	0.00021749	-0.36123	-0.00019299	534.2481936419512	63.045	1.3737	62.861	62.596	63.97	-0.18386					72	35	4	0	0	0	0.1158	2	7098	7098;7108		107.01	42.8	1	5529500			48774	8454	33884	33936	54169;54170	54169					-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2488403320312	2	534.248212	1066.48187	-0.29599	-0.00015813	0.17368	9.2789E-05	-0.12231	-6.5344E-05	534.2480017627763	63.15	1.2024	62.891	62.631	63.833	-0.25824					72	30	4	0	0	0	0.077175	2	7097	7097;7109		118.74	39.292	1	6450900			48775	8454	33884	33936	54171;54172	54171					-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.248212	1066.48187	-1.2561	-0.00067107	1.5254	0.00081492	0.26925	0.00014384	534.2488717964071	62.815	0.7415	62.815	62.489	63.23	0	-0.020337	0.00070986	NaN	148.99	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1343000			48776	8454	33884	33936							-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.248212	1066.48187	-1.007	-0.00053798	1.3899	0.00074253	0.38287	0.00020455	534.2487737734654	63.06	0.8217	62.821	62.419	63.24	-0.23926	-0.014079	0.00056508	NaN	148.99	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1416700			48777	8454	33884	33936							-0.04871154135480538
LTDLVDDNY	9	Unmodified	_LTDLVDDNY_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.248212	1066.48187	-0.17468	-9.332E-05	0.035938	1.92E-05	-0.13874	-7.412E-05	534.2482498488536	62.767	0.89936	62.822	62.474	63.374	0.054394	-0.013317	-0.00088157	NaN	148.99	48	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1340800			48778	8454	33884	33936							-0.04871154135480538
LTDLVKQYT	9	Unmodified	_LTDLVKQYT_					0	0	0			REV__ENSG00000185900|ENST00000331373|POMK	REV__ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2998046875	2	540.800414	1079.58628	-0.66376	-0.00035896	1.4497	0.00078402	0.78599	0.00042506	540.8026008812884	101.81	1.2524	101.82	101.29	102.55	0.0073471					77	28	4	0	0	0	0.85329	1	12980	12980		35.618	1.4457	1	2582800	+		48779	27804	33885	33937	54173	54173					0.04966592411892634
LTDPDGALAK	10	Unmodified	_LTDPDGALAK_					0	0	0		ENST00000551872.1_1_12:57927977-57928175:-|nuORF;ENST00000552390.5_1_12:57926966-57928919:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2	ENST00000551872.1_1_12:57927977-57928175:-|nuORF	ENST00000551872.1_1_12:57927977-57928175:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7690734863281	2	500.769114	999.523675	-0.59829	-0.0002996	1.4274	0.00071478	0.82908	0.00041518	500.77012611438226	39.334	1.6871	39.111	38.721	40.408	-0.22311					95	33	5	0	0	0	0.27169	5	3303	3292;3303;3315;3327;3339		112.11	47.9	1	21522000			48780	8537	33886	33938	54174;54175;54176;54177;54178	54175					0.023894463437159175
LTDPEAAKY	9	Unmodified	_LTDPEAAKY_					0	0	0		ENST00000566701.5_1_1:155184905-155187601:-|nuORF;nc|ENSG00000177628|P04062-3|GBA1;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF;ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.2551574707031	2	504.25584	1006.49713	-1.1856	-0.00059787	0.23524	0.00011862	-0.95041	-0.00047925	504.2557861682351	38.846	0.85455	38.682	38.116	38.971	-0.16458					66	23	4	0	0	0	0.013065	3	3246	3234;3246;3259		171.53	80.755	1	3627900			48781	16947;14638	33887	33939	54179;54180;54181	54180					-0.005862425476266253
LTDPEAAKY	9	Unmodified	_LTDPEAAKY_					0	0	0		ENST00000566701.5_1_1:155184905-155187601:-|nuORF;nc|ENSG00000177628|P04062-3|GBA1;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF;ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.25555419921875	2	504.25584	1006.49713	-0.73534	-0.0003708	-0.061058	-3.0789E-05	-0.7964	-0.00040159	504.25567430503344	38.939	0.85355	38.716	38.219	39.073	-0.22311					68	22	4	0	0	0	0.013065	4	3245	3235;3245;3256;3269		171.53	73.585	1	3689300			48782	16947;14638	33887	33939	54182;54183;54184;54185	54183					-0.005862425476266253
LTDPEAAKY	9	Unmodified	_LTDPEAAKY_					0	0	0		ENST00000566701.5_1_1:155184905-155187601:-|nuORF;nc|ENSG00000177628|P04062-3|GBA1;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF;ENST00000459805.5_1_1:155184905-155186549:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2557067871094	2	504.25584	1006.49713	-0.32535	-0.00016406	-0.72631	-0.00036625	-1.0517	-0.00053031	504.255372375314	38.966	0.73767	38.74	38.246	38.983	-0.2257					66	19	5	0	0	0	0.015752	4	3229	3229;3239;3249;3263		158.07	57.665	1	3824500			48783	16947;14638	33887	33939	54186;54187;54188;54189	54186					-0.005862425476266253
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.7764892578125	2	568.777136	1135.53972	-0.15345	-8.7281E-05	-0.088671	-5.0434E-05	-0.24213	-0.00013772	568.776957370229	62.242	0.69836	62.028	61.584	62.283	-0.21375					48	17	4	0	0	0	0.32213	1	6985	6985		106.68	32.708	1	1913800			48784	8251	33888	33940	54190	54190					-0.022628922100466298
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.7774658203125	2	568.777136	1135.53972	-0.74093	-0.00042142	0.46495	0.00026446	-0.27597	-0.00015697	568.777283735184	62.231	0.68961	62.054	61.654	62.343	-0.17781					54	17	4	0	0	0	0.076563	1	6989	6989		141.52	66.477	1	2248900			48785	8251	33888	33940	54191	54191					-0.022628922100466298
LTDPIQGTEY	10	Unmodified	_LTDPIQGTEY_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.7770385742188	2	568.777136	1135.53972	-0.29575	-0.00016821	-0.17432	-9.9151E-05	-0.47007	-0.00026736	568.7769563444687	62.351	0.66122	62.093	61.666	62.327	-0.25824					59	16	7	0	0	0	0.069016	3	6999	6985;6999;7011		143.37	68.33	1	2104800			48786	8251	33888	33940	54192;54193;54194	54193					-0.022628922100466298
LTDQAIFY	8	Unmodified	_LTDQAIFY_					0	0	0		ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7488098144531	2	485.74765	969.480748	0.0047236	2.2945E-06	0.534	0.00025939	0.53873	0.00026169	485.74755388761633	70.062	0.65778	69.811	69.524	70.182	-0.25063					53	15	4	0	0	0	0.80469	1	8143	8143		58.782	0.97068	1	1631400			48787	2006	33889	33941	54195	54195					-0.00521323713712718
LTDQAIFY	8	Unmodified	_LTDQAIFY_					0	0	0		ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7480163574219	2	485.74765	969.480748	0.37166	0.00018053	-0.19944	-9.6879E-05	0.17222	8.3654E-05	485.74733602312045	70.058	0.65128	69.836	69.514	70.165	-0.22245					47	15	4	0	0	0	0.50239	1	8132	8132		85.359	3.0545	1	1637500			48788	2006	33889	33941	54196	54196					-0.00521323713712718
LTDQVTRF	8	Unmodified	_LTDQVTRF_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.26336669921875	2	490.263999	978.513445	-0.67697	-0.00033189	0.49867	0.00024448	-0.1783	-8.7413E-05	490.26385451414643	27.947	0.80814	27.779	27.487	28.295	-0.16816					30	19	3	0	0	0	0.62178	1	1603	1603		74.255	2.9593	1	1260700			48789	10934	33890	33942	54197	54197					0.023328834091330464
LTDRELEEY	9	Unmodified	_LTDRELEEY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.2794189453125	2	584.280043	1166.54553	-0.44463	-0.00025979	-0.17074	-9.976E-05	-0.61537	-0.00035955	584.2799606088033	47.531	1.3528	47.435	47.122	48.475	-0.096649					64	36	2	0	0	0	0.034407	6	4655	4634;4643;4655;4667;4679;4693		138.06	30.752	1	13919000			48790	1843	33891	33943	54198;54199;54200;54201;54202;54203	54200					-0.03107793698382011
LTDRELEEY	9	Unmodified	_LTDRELEEY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.2799072265625	2	584.280043	1166.54553	-1.1425	-0.00066754	0.56918	0.00033256	-0.57332	-0.00033498	584.2803402254269	47.889	1.3561	47.613	47.006	48.362	-0.27598					108	36	5	0	0	0	0.014738	5	4714	4681;4690;4702;4714;4726		163.15	27.661	1	14471000			48791	1843	33891	33943	54204;54205;54206;54207;54208	54207					-0.03107793698382011
LTDRELEEY	9	Unmodified	_LTDRELEEY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000513762.2_1_4:2911056-2928400:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.2803344726562	2	584.280043	1166.54553	-0.40626	-0.00023737	-0.17461	-0.00010202	-0.58087	-0.00033939	584.2799020692585	47.65	1.6958	47.463	46.93	48.626	-0.18684					130	45	5	0	0	0	0.015512	5	4660	4651;4660;4672;4684;4697		159.28	24.119	1	14060000			48792	1843	33891	33943	54209;54210;54211;54212;54213	54210					-0.03107793698382011
LTDRGVMSY	9	Oxidation (M)	_LTDRGVM(Oxidation (M))SY_		LTDRGVM(1)SY		LTDRGVM(160)SY	0	0	1		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.252685546875	2	529.252774	1056.491	-0.76097	-0.00040275	1.1625	0.00061524	0.40149	0.00021249	529.2532273501719	36.106	0.98986	35.901	35.616	36.606	-0.20518					65	26	4	0	0	0	0.014738	3	2791	2791;2803;2815		163.15	64.879	1	3979800			48793	4198	33892	33944	54214;54215;54216	54214		164			-0.034990840507816756
LTDRGVMSY	9	Oxidation (M)	_LTDRGVM(Oxidation (M))SY_		LTDRGVM(1)SY		LTDRGVM(170)SY	0	0	1		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.253173828125	2	529.252774	1056.491	-0.29382	-0.0001555	0.5846	0.0003094	0.29078	0.0001539	529.2529306014046	36.097	0.84443	35.88	35.647	36.491	-0.21661					61	22	4	0	0	0	0.013065	3	2790	2790;2802;2815		171.53	66.785	1	3964200			48794	4198	33892	33944	54217;54218;54219	54217		164			-0.034990840507816756
LTDRGVMSY	9	Oxidation (M)	_LTDRGVM(Oxidation (M))SY_		LTDRGVM(1)SY		LTDRGVM(170)SY	0	0	1		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2528686523438	2	529.252774	1056.491	0.63168	0.00033432	-0.33103	-0.0001752	0.30065	0.00015912	529.2524394087943	35.991	0.9939	35.793	35.542	36.536	-0.19829					60	26	3	0	0	0	0.014034	3	2783	2759;2771;2783		214.23	84.548	1	4241800			48795	4198	33892	33944	54220;54221;54222	54222		164			-0.034990840507816756
LTDRGVMSY	9	Unmodified	_LTDRGVMSY_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2548828125	2	521.255317	1040.49608	-0.76927	-0.00040099	0.33369	0.00017394	-0.43558	-0.00022705	521.255332587117	45.277	1.0575	45.177	44.789	45.847	-0.099449					99	29	6	0	0	0	0.079716	3	4290	4267;4277;4290		117.81	27.794	1	7831600			48796	4198	33892	33945	54223;54224;54225	54225					-0.022547801881728446
LTDRGVMSY	9	Unmodified	_LTDRGVMSY_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2553100585938	2	521.255317	1040.49608	0.1747	9.1062E-05	-0.74743	-0.0003896	-0.57273	-0.00029854	521.2547738686495	45.45	1.1496	45.198	44.865	46.015	-0.25252					113	31	6	0	0	0	0.079716	2	4300	4289;4300		117.81	45.934	1	8834600			48797	4198	33892	33945	54226;54227	54227					-0.022547801881728446
LTDRGVMSY	9	Unmodified	_LTDRGVMSY_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.255615234375	2	521.255317	1040.49608	-0.36727	-0.00019144	-0.033596	-1.7512E-05	-0.40087	-0.00020895	521.2551417948257	45.409	1.0128	45.198	44.871	45.883	-0.21109					103	28	6	0	0	0	0.087669	2	4296	4284;4296		114.89	43.017	1	8977700			48798	4198	33892	33945	54228;54229	54229					-0.022547801881728446
LTDRLASLY	9	Unmodified	_LTDRLASLY_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2952270507812	2	526.292756	1050.57096	-0.22164	-0.00011665	0.4075	0.00021446	0.18586	9.7816E-05	526.2928793690021	58.445	0.89081	58.264	58.014	58.905	-0.18068					44	21	3	0	0	0	0.28047	1	6421	6421		78.264	9.7791	1	2343700			48799	6210	33893	33946	54230	54230					0.04769725614710296
LTDRLASLY	9	Unmodified	_LTDRLASLY_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.296875	2	526.292756	1050.57096	-0.098362	-5.1767E-05	0.35131	0.00018489	0.25295	0.00013313	526.292812029533	58.389	0.68176	58.199	57.978	58.66	-0.19018					34	16	3	0	0	0	0.15388	2	6428	6414;6428		98.582	16.277	1	2300000			48800	6210	33893	33946	54231;54232	54232					0.04769725614710296
LTDRLASLY	9	Unmodified	_LTDRLASLY_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2955932617188	2	526.292756	1050.57096	0.6586	0.00034662	-0.65774	-0.00034616	0.00085978	4.525E-07	526.2923189377228	58.526	1.174	58.285	58.044	59.218	-0.24165					51	28	3	0	0	0	0.11727	1	6417	6417		106.68	26.744	1	2504900			48801	6210	33893	33946	54233	54233					0.04769725614710296
LTDSGQATRSL	11	Unmodified	_LTDSGQATRSL_					0	0	0		ENST00000493382.5_1_3:145924377-145968784:-|nuORF	ENST00000493382.5_1_3:145924377-145968784:-|nuORF	ENST00000493382.5_1_3:145924377-145968784:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.8530883789062	2	574.798934	1147.58332	-0.18871	-0.00010847	-1.4754	-0.00084807	-1.6641	-0.00095654	574.7993594035262	64.186	0.24161	63.958	63.825	64.066	-0.22774					7	5	2	0	0	0	0.024745	1	7280	7280		27.047	0.3544	1	69159			48802	15501	33894	33947	54234	54234					0.015427172870658978
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.7457275390625	2	463.745108	925.475663	-0.12718	-5.8979E-05	0.18547	8.6013E-05	0.058295	2.7034E-05	463.74500034265935	41.432	0.64529	41.297	41.022	41.668	-0.13553					40	16	4	0	0	0	0.42912	1	3667	3667		93.195	21.9	1	1002000			48803	2136	33895	33948	54235	54235					0.009943724236563867
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.745108	925.475663	-0.31156	-0.00014448	0.23386	0.00010845	-0.077697	-3.6032E-05	463.74512817820994	41.618	0.54134	41.39	41.121	41.662	-0.2278	0.016175	7.8953E-05	NaN	93.195	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1088400			48804	2136	33895	33948							0.009943724236563867
LTDSSLKY	8	Unmodified	_LTDSSLKY_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;ENST00000331103.5_1_22:38150943-38151269:+|nuORF	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.745108	925.475663	-0.32832	-0.00015226	0.038586	1.7894E-05	-0.28974	-0.00013436	463.74504773609686	41.665	0.6004	41.435	41.196	41.797	-0.23029	0.060811	-0.00010216	NaN	93.195	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100400			48805	2136	33895	33948							0.009943724236563867
LTDTICWFE	9	Unmodified	_LTDTICWFE_					0	0	0		ENST00000490936.5_1_X:153577219-153578780:-|nuORF	ENST00000490936.5_1_X:153577219-153578780:-|nuORF	ENST00000490936.5_1_X:153577219-153578780:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2889404296875	2	564.257525	1126.5005	-0.41692	-0.00023525	3.9356	0.0022207	3.5187	0.0019854	564.2588521131634	67.403	0.68008	67.403	66.926	67.606	0					34	16	3	0	0	0	0.024457	1	7979	7979		37.159	5.2042	1	226850			48806	15443	33896	33949	54236	54236					-0.05769315765246574
LTDTQNAQY	9	Unmodified	_LTDTQNAQY_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.2467651367188	2	527.246003	1052.47745	-0.85978	-0.00045332	1.1237	0.00059249	0.26396	0.00013917	527.2464833756903	38.198	1.0389	38.018	37.775	38.814	-0.17929					80	29	4	0	0	0	0.03849	2	3128	3128;3139		134.81	49.895	1	5896700			48807	3060	33897	33950	54237;54238	54237					-0.046686185583666884
LTDTQNAQY	9	Unmodified	_LTDTQNAQY_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.2462158203125	2	527.246003	1052.47745	-0.99088	-0.00052244	1.2243	0.00064553	0.23346	0.00012309	527.2465597857861	38.216	1.1004	37.995	37.724	38.824	-0.22148					85	30	4	0	0	0	0.12602	2	3127	3127;3139		104.75	32.224	1	5693200			48808	3060	33897	33950	54239;54240	54239					-0.046686185583666884
LTDTQNAQY	9	Unmodified	_LTDTQNAQY_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.2457885742188	2	527.246003	1052.47745	-0.62985	-0.00033209	0.66372	0.00034994	0.033868	1.7857E-05	527.2462272536086	38.158	1.0623	37.939	37.681	38.744	-0.21849					73	29	4	0	0	0	0.014034	2	3102	3102;3114		166.68	58.591	1	5616000			48809	3060	33897	33950	54241;54242	54241					-0.046686185583666884
LTDTSVKRND	10	Unmodified	_LTDTSVKRND_					0	0	0		ENSG00000186188|ENST00000371481|FFAR4;nc|ENSG00000186188|Q5NUL3-1|FFAR4	ENSG00000186188|ENST00000371481|FFAR4	ENSG00000186188|ENST00000371481|FFAR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	574.83740234375	2	574.798934	1147.58332	-0.15447	-8.8788E-05	-0.63075	-0.00036256	-0.78522	-0.00045134	574.7981600662534	52.057	0.53726	51.909	51.711	52.248	-0.14735					20	14	2	0	0	0	0.03519	1	5506	5506		37.812	0	1	169550			48810	9525	33898	33951	54243	54243					0.015427172870886352
LTDVLQVLI	9	Unmodified	_LTDVLQVLI_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2969665527344	2	507.3157	1012.61685	0.33669	0.00017081	-1.2617	-0.00064008	-0.92501	-0.00046927	507.3147913485238	58.454	0.62969	58.545	58.297	58.926	0.091217					38	16	3	0	0	0	0.024457	1	6513	6513		37.159	6.6555	1	758980	+		48811	22447	33899	33952	54244	54244					0.11104370796954299
LTDVLRRAIR	10	Unmodified	_LTDVLRRAIR_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	3	404.922689	1211.74624	-0.99259	-0.00040192	0.60463	0.00024483	-0.38797	-0.0001571	404.9231731319628	26.453	3.5295	26.289	25.834	29.363	-0.16331					233	88	5	0	0	0	1.1295	1	1389	1389		26.063	3.4837	1	42819000	+		48812	26561	33900	33953	54245	54245					0.14883565199579607
LTDVVFFF	8	Unmodified	_LTDVVFFF_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|195|1|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|195|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.8033752441406	2	494.262936	986.51132	-0.08603	-4.2522E-05	-1.3683	-0.00067631	-1.4544	-0.00071884	494.2622263667337	23.458	0.64098	23.256	23.061	23.702	-0.20193					32	14	3	0	0	0	0.027866	1	916	916		50.025	28.065	1	235090	+		48813	36121	33901	33954	54246	54246					0.0175245467133891
LTDWKDFLL	9	Unmodified	_LTDWKDFLL_					0	0	0		nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	nc|ENSG00000289758|Q92902-2|HPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.2913818359375	2	575.810782	1149.60701	0.3717	0.00021403	-2.4326	-0.0014007	-2.0609	-0.0011867	575.8097200597066	81.626	0.67578	81.397	81.229	81.905	-0.22891					19	15	2	0	0	0	0.024477	1	9874	9874		20.947	4.4738	1	80121			48814	2839	33902	33955	54247	54247					0.03819182791585263
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000254598|ENST00000528848|CSNK2A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	603.295654296875	2	603.295496	1204.57644	-0.71446	-0.00043103	0.71517	0.00043146	0.00071258	4.299E-07	603.2957719050688	68.475	0.76706	68.213	67.939	68.706	-0.26166					53	18	4	0	0	0	0.041068	2	7920	7908;7920		132.76	65.264	1	2166000			48815	2302	33903	33956	54248;54249	54249					-0.017665955934717203
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000254598|ENST00000528848|CSNK2A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	603.29541015625	2	603.295496	1204.57644	-0.018425	-1.1116E-05	0.18367	0.00011081	0.16524	9.969E-05	603.2954960626228	68.454	0.88091	68.212	67.951	68.832	-0.24277					54	21	4	0	0	0	0.015752	2	7914	7914;7925		158.07	78.362	1	2399500			48816	2302	33903	33956	54250;54251	54250					-0.017665955934717203
LTDYDIRFY	9	Unmodified	_LTDYDIRFY_					0	0	0		ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000254598|ENST00000528848|CSNK2A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.2953491210938	2	603.295496	1204.57644	0.28725	0.0001733	-0.41417	-0.00024987	-0.12692	-7.657E-05	603.2951502287871	68.43	0.88477	68.199	67.875	68.76	-0.23048					58	21	4	0	0	0	0.025498	3	7907	7897;7907;7921		145.16	81.622	1	2113000			48817	2302	33903	33956	54252;54253;54254	54253					-0.017665955934717203
LTEALAFAI	9	Unmodified	_LTEALAFAI_					0	0	0		nc|ENSG00000144868|Q6UXF1-2|TMEM108;ENST00000511388.1_1_3:133098579-133114827:+|nuORF;ENSG00000144868|ENST00000321871|TMEM108	nc|ENSG00000144868|Q6UXF1-2|TMEM108	nc|ENSG00000144868|Q6UXF1-2|TMEM108	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.7734375	2	474.773668	947.532783	0.66162	0.00031412	-0.79343	-0.0003767	-0.1318	-6.2575E-05	474.77321307172184	99.111	1.2212	99.122	98.522	99.743	0.010239					65	27	3	0	0	0	0.80658	1	12604	12604		38.806	0.99462	1	2003000			48818	5778	33904	33957	54255	54255					0.05691839700023138
LTEAQAHHIFI	11	Unmodified	_LTEAQAHHIFI_					0	0	0		ENST00000472046.1_1_3:63991581-63991704:+|nuORF	ENST00000472046.1_1_3:63991581-63991704:+|nuORF	ENST00000472046.1_1_3:63991581-63991704:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.3479614257812	2	640.343312	1278.67207	1.0202	0.0006533	2.1199	0.0013574	3.1401	0.0020108	640.3451500409111	105.2	0.5163	105.2	105.02	105.54	0.00096893					27	16	3	0	0	0	0.9728	1	13466	13466		42.864	5.0528	1	364930			48819	14980	33905	33958	54256	54256					0.04388177317400732
LTEAWRRREPK	11	Unmodified	_LTEAWRRREPK_					0	0	0			REV__ENST00000560539.5_1_15:69689451-69689772:-|nuORF	REV__ENST00000560539.5_1_15:69689451-69689772:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2925720214844	3	481.27227	1440.79498	0.16415	7.8999E-05	-0.8583	-0.00041308	-0.69416	-0.00033408	481.27173315233864	61.301	0.61082	61.372	61.095	61.706	0.071125					37	15	3	0	0	0	0.024801	1	7008	7008		23.378	4.1152	1	573330	+		48820	35151	33906	33959	54257	54257					0.09221433768698262
LTEAWRRREPK	11	Unmodified	_LTEAWRRREPK_					0	0	0			REV__ENST00000560539.5_1_15:69689451-69689772:-|nuORF	REV__ENST00000560539.5_1_15:69689451-69689772:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	481.27227	1440.79498	-0.94394	-0.00045429	-0.25806	-0.0001242	-1.202	-0.00057849	481.27198004018453	61.46	0.37534	61.283	61.079	61.454	-0.17675	-0.067648	0.00083332	NaN	26.75	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273720	+		48821	35151	33906	33959							0.09221433768698262
LTEAYKTQA	9	Unmodified	_LTEAYKTQA_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	OPSCC_40_ClassI_Rep-2	5	512.7714233398438	2	512.769114	1023.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.948	1	19.748	19.248	20.248	-0.2001								0	0	0	0.52604	1	478	478		49.442	0	1				48822	9882	33907	33960	54258	54258					0.012854463437065533
LTECHDIR	8	Unmodified	_LTECHDIR_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7791442871094	2	493.739834	985.465115	0.34009	0.00016791	1.1915	0.00058827	1.5316	0.00075619	493.73992469686584	58.949	0.68633	58.768	58.426	59.112	-0.18134					36	16	4	0	0	0	0.027866	1	6458	6458		30.504	1.3541	1	598630			48823	5560	33908	33961	54259	54259					-0.02819933502416916
LTECHDIR	8	Unmodified	_LTECHDIR_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.739834	985.465115	-0.59529	-0.00029392	2.2249	0.0010985	1.6296	0.00080458	493.7404008112981	59.072	0.6023	58.884	58.663	59.265	-0.18795	0.042027	0.00067171	NaN	30.504	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625530			48824	5560	33908	33961							-0.02819933502416916
LTECHDIR	8	Unmodified	_LTECHDIR_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.739834	985.465115	0.58853	0.00029058	1.343	0.00066308	1.9315	0.00095366	493.73975452424435	59.115	0.59377	58.873	58.583	59.177	-0.24165	0.031664	-0.00019912	NaN	30.504	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517210			48825	5560	33908	33961							-0.02819933502416916
LTEDKKDKV	9	Unmodified	_LTEDKKDKV_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.304931640625	2	538.303321	1074.59209	-0.39404	-0.00021211	3.4362	0.0018497	3.0422	0.0016376	538.3052716518212	89.27	1.2465	89.285	88.838	90.084	0.015907					60	29	3	0	0	0	0.31037	1	11192	11192		74.255	2.9593	1	843740	+		48826	20912	33909	33962	54260	54260					0.057776909235599305
LTEDSIGKFY	10	Unmodified	_LTEDSIGKFY_					0	0	0			REV__ANK3|p.G4005D|1|0.3|ENSG00000151150|chr10:60068867-60068867|C/T|missense_variant	REV__ANK3|p.G4005D|1|0.3|ENSG00000151150|chr10:60068867-60068867|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.7691650390625	2	586.795329	1171.5761	-0.39401	-0.0002312	-0.90163	-0.00052907	-1.2956	-0.00076027	586.7952236203962	79.39	0.70779	79.24	78.821	79.529	-0.15051					26	16	2	0	0	0	0.03519	1	9520	9520		76.774	10.345	1	125550	+		48827	19135	33910	33963	54261	54261					-0.0028201531331433216
LTEDYFEP	8	Unmodified	_LTEDYFEP_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C	REV__ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2925720214844	2	507.226748	1012.43894	0.35002	0.00017754	-2.8311	-0.001436	-2.4811	-0.0012585	507.2249877767648	66.002	0.42354	66.002	65.76	66.184	0					15	10	2	0	0	0	0.027866	1	7851	7851		25.45	0	1	155820	+		48828	19891	33911	33964	54262	54262					-0.06677924192899809
LTEETIDLV	9	Unmodified	_LTEETIDLV_					0	0	0			REV__ENSG00000089157|ENST00000392514|RPLP0	REV__ENSG00000089157|ENST00000392514|RPLP0	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.271240234375	2	516.776605	1031.53866	-0.64317	-0.00033238	1.9591	0.0010124	1.3159	0.00068004	517.278854407655	48.473	1.3545	48.32	47.51	48.864	-0.15295					103	39	5	0	0	0	0.024487	1	5008	5008		31.955	0	1	2162800	+		48829	20843	33912	33965	54263	54263					0.024148934210643347
LTEFKMEVE	9	Unmodified	_LTEFKMEVE_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.2762451171875	2	563.278457	1124.54236	-0.67038	-0.00037761	-2.986	-0.0016819	-3.6564	-0.0020595	563.2767772660837	81.732	3.2047	81.732	81.299	84.504	0					218	75	4	0	0	0	0.096521	4	10197	10162;10173;10197;10209		111.65	22.092	1	19333000			48830	3953	33913	33966	54264;54265;54266;54267	54266					-0.014927600767350668
LTEFKMEVE	9	Unmodified	_LTEFKMEVE_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.2766723632812	2	563.278457	1124.54236	-0.073824	-4.1583E-05	-3.5217	-0.0019837	-3.5956	-0.0020253	563.2764708422711	81.861	3.0713	81.73	81.298	84.369	-0.13075					222	72	4	0	0	0	0.17822	2	10230	10145;10230		93.195	8.3033	1	21913000			48831	3953	33913	33966	54268;54269	54269					-0.014927600767350668
LTEFKMEVE	9	Unmodified	_LTEFKMEVE_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.2767944335938	2	563.278457	1124.54236	-0.90855	-0.00051177	-2.7712	-0.001561	-3.6797	-0.0020727	563.2768894849044	81.695	3.3298	81.721	81.25	84.579	0.025711					226	78	4	0	0	0	0.15029	1	10096	10096		99.375	3.1845	1	23997000			48832	3953	33913	33966	54270	54270					-0.014927600767350668
LTEFKMEVE	9	Unmodified	_LTEFKMEVE_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2766723632812	2	563.278457	1124.54236	-0.78978	-0.00044486	-2.6902	-0.0015153	-3.48	-0.0019602	563.2769492546245	81.784	2.2277	81.642	81.151	83.379	-0.14248					171	51	5	0	0	0	0.20967	2	9840	9840;9852		87.754	13.038	1	6248000			48833	3953	33913	33966	54271;54272	54271					-0.014927600767350668
LTEFLSRLF	9	Unmodified	_LTEFLSRLF_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.3182983398438	2	563.318774	1124.623	-0.1892	-0.00010658	-0.21615	-0.00012176	-0.40535	-0.00022834	563.3185603946935	61.916	0.79012	61.702	61.416	62.206	-0.21375					59	19	4	0	0	0	0.17822	1	6954	6954		93.195	0.052222	1	3698600	+		48834	21453	33914	33967	54273	54273					0.0656688902845417
LTEGVIITV	9	Unmodified	_LTEGVIITV_					0	0	0		ENSG00000089159|ENST00000637617|PXN	ENSG00000089159|ENST00000637617|PXN	ENSG00000089159|ENST00000637617|PXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.7869873046875	2	472.786776	943.558998	0.62509	0.00029553	0.0058408	2.7614E-06	0.63093	0.00029829	472.78639731613976	83.527	1.3201	83.358	83.033	84.353	-0.16915					60	30	4	0	0	0	0.4752	1	10117	10117		60.972	7.6205	1	1391900			48835	1897	33915	33968	54274	54274					0.08496108871509023
LTEHLCTII	9	Unmodified	_LTEHLCTII_					0	0	0		ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7849731445312	2	521.78371	1041.55287	0.47932	0.0002501	0.67334	0.00035134	1.1527	0.00060144	521.7836838911643	69.925	0.56635	69.632	69.312	69.878	-0.29291					47	13	5	0	0	0	0.25032	1	8389	8389		82.305	0	1	4849000			48836	3812	33916	33969	54275	54275					0.0337526736836935
LTEHLCTII	9	Unmodified	_LTEHLCTII_					0	0	0		ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7854614257812	2	521.78371	1041.55287	-0.52977	-0.00027643	2.402	0.0012533	1.8723	0.00097692	521.785452214949	69.622	1.2373	69.638	68.937	70.174	0.015129					98	31	5	0	0	0	0.33245	1	8303	8303		71.296	7.7619	1	4995900			48837	3812	33916	33969	54276	54276					0.0337526736836935
LTEIDSPANL	10	Unmodified	_LTEIDSPANL_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7070922851562	2	536.779679	1071.5448	-0.13758	-7.3849E-05	-2.9209	-0.0015679	-3.0585	-0.0016417	536.7783350919757	57.298	0.57308	57.096	56.747	57.32	-0.20208					26	15	2	0	0	0	0.03519	1	6201	6201		42.864	0	1	293140			48838	3809	33917	33970	54277	54277					0.011894116525809295
LTEIRVML	8	Unmodified	_LTEIRVML_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7908935546875	2	487.788795	973.563038	0.29152	0.0001422	3.4181	0.0016673	3.7097	0.0018095	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	1.0239	1	10487	10487		33.516	1.5607	1	2091900	+		48839	27410	33918	33971	54278	54278					0.0751987509358969
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11	ENST00000478641.5_1_1:1248876-1249468:-|nuORF	ENST00000478641.5_1_1:1248876-1249468:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.77978515625	2	569.780013	1137.54547	-0.36018	-0.00020522	-0.34408	-0.00019605	-0.70426	-0.00040127	569.7800662733928	29.995	1.1382	29.751	29.4	30.538	-0.24415					74	26	5	0	0	0	0.03849	3	1884	1873;1884;1896		134.81	38.62	1	1970400			48840	4225	33919	33972	54279;54280;54281	54280					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11	ENST00000478641.5_1_1:1248876-1249468:-|nuORF	ENST00000478641.5_1_1:1248876-1249468:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.779541015625	2	569.780013	1137.54547	-0.6701	-0.00038181	0.083495	4.7574E-05	-0.58661	-0.00033424	569.7801711299476	29.897	1.0939	29.724	29.365	30.459	-0.17258					65	25	4	0	0	0	0.021872	3	1854	1854;1865;1878		148.04	57.665	1	1827600			48841	4225	33919	33972	54282;54283;54284	54282					-0.017797489077111095
LTEKANHYY	9	Unmodified	_LTEKANHYY_					0	0	0		ENST00000478641.5_1_1:1248876-1249468:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11	ENST00000478641.5_1_1:1248876-1249468:-|nuORF	ENST00000478641.5_1_1:1248876-1249468:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7797241210938	2	569.780013	1137.54547	-0.08186	-4.6642E-05	-0.42703	-0.00024331	-0.50889	-0.00028995	569.7797995466757	29.866	1.2192	29.716	29.337	30.556	-0.14952					72	28	5	0	0	0	0.015925	3	1846	1835;1846;1859		157.21	47.114	1	1843700			48842	4225	33919	33972	54285;54286;54287	54286					-0.017797489077111095
LTEKLRKFRFR	11	Unmodified	_LTEKLRKFRFR_					0	0	0		ENST00000598218.1_1_19:39823656-39826616:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000598218.1_1_19:39823656-39826616:-|nuORF	ENST00000598218.1_1_19:39823656-39826616:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.2749328613281	3	498.640294	1492.89905	0.96005	0.00047872	-2.8983	-0.0014452	-1.9382	-0.00096649	498.63845835564484	19.848	0.53333	19.648	19.455	19.988	-0.2001					19	10	3	0	0	0	0.024856	1	504	504		9.2118	0	1	26129			48843	4452	33920	33973	54288	54288					0.17231760596177992
LTEKLRKFRFR	11	Unmodified	_LTEKLRKFRFR_					0	0	0		ENST00000598218.1_1_19:39823656-39826616:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000598218.1_1_19:39823656-39826616:-|nuORF	ENST00000598218.1_1_19:39823656-39826616:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2747802734375	3	498.640294	1492.89905	0.61375	0.00030604	-2.6888	-0.0013408	-2.0751	-0.0010347	498.9731994748116	19.811	0.53916	19.577	19.424	19.963	-0.23345					13	10	2	0	0	0	0.024789	1	485	485		26.75	17.538	1	20648			48844	4452	33920	33973	54289	54289					0.17231760596177992
LTEKLRKFRFR	11	Unmodified	_LTEKLRKFRFR_					0	0	0		ENST00000598218.1_1_19:39823656-39826616:-|nuORF;ENSG00000130755|ENST00000597595|GMFG	ENST00000598218.1_1_19:39823656-39826616:-|nuORF	ENST00000598218.1_1_19:39823656-39826616:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	498.640294	1492.89905	0.10461	5.2163E-05	-2.6812	-0.0013369	-2.5766	-0.0012848	498.63906957469635	19.66	0.59034	19.499	19.233	19.823	-0.16079	-0.075973	5.7356E-05	NaN	26.75	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43136			48845	4452	33920	33973							0.17231760596177992
LTELCPPSQ	9	Unmodified	_LTELCPPSQ_					0	0	0			REV__ENST00000575801.5_2_17:703870-704173:-|nuORF	REV__ENST00000575801.5_2_17:703870-704173:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2893981933594	2	494.244418	986.474282	0.28314	0.00013994	-0.44322	-0.00021906	-0.16008	-7.9119E-05	494.2445565960277	61.456	0.38393	61.456	61.374	61.758	0					17	9	3	0	0	0	0.024457	1	7141	7141		29.15	0	1	424730	+		48846	35465	33921	33974	54290	54290					-0.019495849367331175
LTELFVKEN	9	Unmodified	_LTELFVKEN_					0	0	0		nc|ENSG00000072756|Q96Q11-2|TRNT1;ENSG00000072756|ENST00000251607|TRNT1;ENST00000482311.1_1_3:3170856-3182346:+|nuORF	nc|ENSG00000072756|Q96Q11-2|TRNT1	nc|ENSG00000072756|Q96Q11-2|TRNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.3141479492188	2	546.800414	1091.58628	-0.34818	-0.00019038	-0.014	-7.6551E-06	-0.36218	-0.00019804	546.8003735244581	45.98	0.51694	45.719	45.451	45.968	-0.26118					28	13	3	0	0	0	0.023061	1	4354	4354		101.6	24.283	1	670220			48847	18077	33922	33975	54291	54291					0.04414592411899321
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1;ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1	chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.26904296875	2	562.268947	1122.52334	0.45581	0.00025629	-0.85162	-0.00047884	-0.39581	-0.00022255	562.2685106822915	79.796	3.4729	79.55	79.153	82.626	-0.2465					202	82	4	0	0	0	0.012965	7	9583	9513;9523;9535;9547;9559;9571;9583		221.53	124.06	1	42355000			48848	337	33923	33976	54292;54293;54294;54295;54296;54297;54298	54298					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1;ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1	chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.268798828125	2	562.268947	1122.52334	0.24752	0.00013918	-0.87116	-0.00048983	-0.62364	-0.00035065	562.2685298132369	79.776	3.3506	79.557	79.16	82.51	-0.21923					233	79	5	0	0	0	0.012965	8	9603	9523;9531;9543;9555;9567;9579;9591;9603		221.53	111.2	1	45862000			48849	337	33923	33976	54299;54300;54301;54302;54303;54304;54305;54306	54306					-0.033019733761420866
LTELPDWSY	9	Unmodified	_LTELPDWSY_					0	0	0		chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1;ENST00000557543.5_1_14:23299153-23299471:+|nuORF;ENST00000311892.10_1_14:23299153-23300177:+|nuORF;ENST00000553482.5_1_14:23299112-23299471:+|nuORF;nc|ENSG00000172590|Q86TS9-4|MRPL52;ENSG00000172590|ENST00000397496|MRPL52;nc|ENSG00000172590|Q86TS9|MRPL52	chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1	chr14:22830254-22830419|169|17.41|0.79|4.46|+|2|MRPL52,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2689208984375	2	562.268947	1122.52334	-0.048177	-2.7088E-05	-0.5117	-0.00028772	-0.55988	-0.0003148	562.2687274580001	79.682	3.488	79.531	79.11	82.598	-0.15051					212	82	5	0	0	0	0.012965	8	9516	9495;9504;9516;9528;9540;9552;9564;9576		221.53	120.28	1	48286000			48850	337	33923	33976	54307;54308;54309;54310;54311;54312;54313;54314	54309					-0.033019733761420866
LTELPPLDDY	10	Unmodified	_LTELPPLDDY_					0	0	0		ENST00000587353.5_1_18:45394679-45413284:-|nuORF;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.2946166992188	2	588.295162	1174.57577	-0.65002	-0.0003824	0.36301	0.00021356	-0.28701	-0.00016885	588.2951131346354	78.258	0.93573	78.004	77.578	78.514	-0.25471					65	21	4	0	0	0	0.033445	2	9323	9323;9340		152.47	82.843	1	1318600			48851	8554	33924	33977	54315;54316	54315					-0.004534350331823589
LTELPPLDDY	10	Unmodified	_LTELPPLDDY_					0	0	0		ENST00000587353.5_1_18:45394679-45413284:-|nuORF;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.2947998046875	2	588.295162	1174.57577	-0.28285	-0.0001664	0.09583	5.6377E-05	-0.18702	-0.00011002	588.2949553196496	78.143	0.97649	77.904	77.536	78.512	-0.23897					63	22	4	0	0	0	0.02722	2	9319	9319;9329		157.33	61.204	1	1264600			48852	8554	33924	33977	54317;54318	54317					-0.004534350331823589
LTELPPLDDY	10	Unmodified	_LTELPPLDDY_					0	0	0		ENST00000587353.5_1_18:45394679-45413284:-|nuORF;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	ENST00000587353.5_1_18:45394679-45413284:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.2949829101562	2	588.295162	1174.57577	-0.64139	-0.00037733	0.26228	0.0001543	-0.37912	-0.00022303	588.2950883103059	78.114	0.93752	77.958	77.533	78.47	-0.15591					63	21	4	0	0	0	0.26127	2	9291	9291;9303		113.41	56.691	1	1246500			48853	8554	33924	33977	54319;54320	54319					-0.004534350331823589
LTEMSEGEIH	10	Unmodified	_LTEMSEGEIH_					0	0	0		CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.2578125	2	573.260796	1144.50704	0.61038	0.00034991	-1.599	-0.00091662	-0.98858	-0.00056671	573.2593967136529	79.771	0.91925	79.525	79.236	80.156	-0.2465					91	21	6	0	0	0	0.57825	2	9532	9532;9555		79.451	2.6769	1	2659500		+	48854	488	33925	33978	54321;54322	54321					-0.05943422604536863
LTEMSEGEIH	10	Unmodified	_LTEMSEGEIH_					0	0	0		CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.2559814453125	2	573.260796	1144.50704	0.14687	8.4197E-05	-1.0377	-0.00059485	-0.89078	-0.00051065	573.2595584216349	79.77	1.0849	79.55	79.202	80.287	-0.21923					99	25	7	0	0	0	0.50466	2	9540	9540;9549		87.754	10.98	1	2848100		+	48855	488	33925	33978	54323;54324	54323					-0.05943422604536863
LTEPERKP	8	Unmodified	_LTEPERKP_					0	0	0		ENSG00000169607|ENST00000302450|CKAP2L;nc|ENSG00000169607|Q8IYA6-3|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.3059387207031	2	485.271824	968.529095	-1.2291	-0.00059643	-0.39648	-0.0001924	-1.6255	-0.00078883	485.27192923574756	30.662	0.41221	30.662	30.426	30.838	0					13	9	2	0	0	0	0.027866	1	2007	2007		7.1934	0	1	129810			48856	7956	33926	33979	54325	54325					0.043571699261860886
LTEPTGLLY	9	Unmodified	_LTEPTGLLY_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7764587402344	2	503.776408	1005.53826	-0.11577	-5.8321E-05	0.068914	3.4717E-05	-0.046854	-2.3604E-05	503.7763104747755	73.586	0.88219	73.309	72.842	73.724	-0.2769					60	21	5	0	0	0	0.021668	5	8662	8639;8651;8662;8673;8686		148.21	56.015	1	4841000			48857	7857	33927	33980	54326;54327;54328;54329;54330	54328					0.03571518491844472
LTEPTGLLY	9	Unmodified	_LTEPTGLLY_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7764587402344	2	503.776408	1005.53826	-0.44092	-0.00022212	0.43077	0.00021701	-0.010149	-5.1129E-06	503.7764825089211	73.614	0.78954	73.35	72.936	73.725	-0.26479					62	19	5	0	0	0	0.015769	5	8660	8648;8660;8672;8684;8696		157.99	74.535	1	5530100			48858	7857	33927	33980	54331;54332;54333;54334;54335	54332					0.03571518491844472
LTEPTGLLY	9	Unmodified	_LTEPTGLLY_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7762756347656	2	503.776408	1005.53826	-0.49969	-0.00025173	0.3891	0.00019602	-0.11059	-5.5712E-05	503.77647864914314	73.451	0.75674	73.26	72.927	73.683	-0.19026					58	18	4	0	0	0	0.013492	4	8632	8620;8632;8644;8656		183.89	91.704	1	5607400			48859	7857	33927	33980	54336;54337;54338;54339	54337					0.03571518491844472
LTEQAQTLQQQ	11	Unmodified	_LTEQAQTLQQQ_					0	0	0			REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.73773193359375	3	429.889491	1286.64664	-1.1867	-0.00051015	3.3839	0.0014547	2.1972	0.00094457	430.2259225107345	24.762	0.35978	24.715	24.487	24.847	-0.047146					11	7	2	0	0	0	0.024726	1	1087	1087		32.034	20.937	1	32907	+		48860	21634	33928	33981	54340	54340					0.01478658004339195
LTEQAQTLQQQ	11	Unmodified	_LTEQAQTLQQQ_					0	0	0			REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	429.889491	1286.64664	0.56708	0.00024378	1.2366	0.00053161	1.8037	0.00077539	429.89000324053245	24.63	0.27551	24.708	24.547	24.823	0.078344	0.060317	0.0012425	NaN	32.034	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40612	+		48861	21634	33928	33981							0.01478658004339195
LTEQAQTLQQQ	11	Unmodified	_LTEQAQTLQQQ_					0	0	0			REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	REV__ENST00000488915.1_1_7:72984839-72985682:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	429.889491	1286.64664	2.2787	0.00097958	-1.168	-0.00050213	1.1106	0.00047745	429.8888427038114	24.741	0.56872	24.56	24.329	24.898	-0.18089	-0.087362	-0.0018587	NaN	32.034	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125980	+		48862	21634	33928	33981							0.01478658004339195
LTEQCALTLM	10	Unmodified	_LTEQCALTLM_					0	0	0			REV__ENST00000381341.6_1_2:15771139-15771202:+|nuORF	REV__ENST00000381341.6_1_2:15771139-15771202:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7855224609375	2	561.78031	1121.54607	0.079223	4.4506E-05	2.5266	0.0014194	2.6058	0.0014639	561.7809428330943	68.045	0.67787	67.807	67.589	68.267	-0.23814					22	16	2	0	0	0	0.03519	1	7824	7824		51.193	9.7661	1	164760	+		48863	31516	33929	33982	54341	54341					-0.009844135745424865
LTEQCALTLM	10	Unmodified	_LTEQCALTLM_					0	0	0			REV__ENST00000381341.6_1_2:15771139-15771202:+|nuORF	REV__ENST00000381341.6_1_2:15771139-15771202:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.78031	1121.54607	0.32035	0.00017997	3.2506	0.0018261	3.5709	0.0020061	561.7809346714645	68.03	0.52032	67.796	67.676	68.196	-0.23375	-0.0050506	0.00040023	NaN	51.193	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148250	+		48864	31516	33929	33982							-0.009844135745424865
LTEQIMSHC	9	Unmodified	_LTEQIMSHC_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.29833984375	2	531.241352	1060.46815	-0.33656	-0.00017879	4.0004	0.0021252	3.6638	0.0019464	531.2434200035707	65.831	0.14405	65.558	65.498	65.642	-0.27282					5	3	2	0	0	0	0.024457	1	7781	7781		37.159	6.6555	1	81427	+		48865	33886	33930	33983	54342	54342					-0.059664264399089006
LTEQRALLY	9	Unmodified	_LTEQRALLY_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8126220703125	2	553.813856	1105.61316	0.69248	0.0003835	0.025594	1.4174E-05	0.71807	0.00039768	553.8133926929488	51.1	0.65215	50.988	50.749	51.401	-0.11163					37	16	4	0	0	0	0.19099	1	5234	5234		90.37	5.4543	1	1441700			48866	9909	33931	33984	54343	54343					0.06457701023100526
LTEQRALLY	9	Unmodified	_LTEQRALLY_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8135375976562	2	553.813856	1105.61316	-0.32446	-0.00017969	0.723	0.00040041	0.39854	0.00022072	553.8137967644449	51.355	0.79631	51.079	50.816	51.613	-0.27643					42	20	4	0	0	0	0.091713	1	5268	5268		113.41	17.221	1	1491300			48867	9909	33931	33984	54344	54344					0.06457701023100526
LTEQRALLY	9	Unmodified	_LTEQRALLY_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.813232421875	2	553.813856	1105.61316	0.76668	0.0004246	-0.38658	-0.00021409	0.3801	0.00021051	553.8130792154252	51.191	0.76775	51.01	50.685	51.453	-0.18071					32	17	3	0	0	0	0.077175	1	5245	5245		118.74	33.828	1	1550400			48868	9909	33931	33984	54345	54345					0.06457701023100526
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	594.2640991210938	2	594.264393	1186.51423	-0.53996	-0.00032088	-0.088154	-5.2387E-05	-0.62812	-0.00037327	594.2643434461762	46.868	1.6046	46.771	46.473	48.077	-0.096649					125	43	5	0	0	0	0.0087688	6	4585	4525;4535;4546;4559;4572;4585		296.37	153.26	1	26566000			48869	8430	33932	33985	54346;54347;54348;54349;54350;54351	54351					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.2642822265625	2	594.264393	1186.51423	-0.54142	-0.00032175	0.017114	1.017E-05	-0.52431	-0.00031158	594.264414322577	47.194	1.5647	46.924	46.628	48.193	-0.26939					120	42	5	0	0	0	0.00053422	6	4575	4566;4575;4587;4599;4611;4624		317.1	176.36	1	27822000			48870	8430	33932	33985	54352;54353;54354;54355;54356;54357	54353					-0.07156366732488095
LTEQYNEQY	9	Unmodified	_LTEQYNEQY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.264892578125	2	594.264393	1186.51423	-0.74213	-0.00044102	0.17766	0.00010558	-0.56446	-0.00033544	594.2644801650353	46.994	1.6336	46.8	46.481	48.114	-0.19387					131	44	6	0	0	0	0.0021034	6	4563	4542;4552;4563;4575;4587;4602		315.19	176.36	1	27341000			48871	8430	33932	33985	54358;54359;54360;54361;54362;54363	54360					-0.07156366732488095
LTESRGRDL	9	Unmodified	_LTESRGRDL_					0	0	0			REV__ENST00000337907.7_2_1:8482856-8526006:-|nuORF	REV__ENST00000337907.7_2_1:8482856-8526006:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7623901367188	2	523.783087	1045.55162	0.60781	0.00031836	3.6593	0.0019167	4.2671	0.002235	523.7846606383927	59.606	0.71462	59.409	59.05	59.765	-0.19742					19	11	2	0	0	0	0.024354	1	6597	6597		23.042	0	1	758990	+		48872	30571	33933	33986	54364	54364					0.030667693238001448
LTETEDWLY	9	Unmodified	_LTETEDWLY_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2719116210938	2	585.271687	1168.52882	-0.59013	-0.00034539	0.060874	3.5628E-05	-0.52926	-0.00030976	585.2715458896823	76.301	0.92603	76.132	75.892	76.818	-0.16854					48	21	4	0	0	0	0.18915	2	9057	9048;9057		90.777	35.272	1	1105100			48873	3830	33934	33987	54365;54366	54366					-0.048702945843160705
LTETEDWLY	9	Unmodified	_LTETEDWLY_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	585.271687	1168.52882	-0.34642	-0.00020275	-1.753	-0.001026	-2.0994	-0.0012287	585.2699024041938	76.523	0.82707	76.254	75.854	76.681	-0.26806	0.056588	-0.0018839	NaN	90.777	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858770			48874	3830	33934	33987							-0.048702945843160705
LTETEDWLY	9	Unmodified	_LTETEDWLY_					0	0	0		nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.271687	1168.52882	-0.70143	-0.00041053	-0.17998	-0.00010534	-0.88141	-0.00051586	585.2713370203124	76.458	0.63391	76.207	76.023	76.657	-0.25162	0.0088637	-4.2664E-05	NaN	90.777	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1059000			48875	3830	33934	33987							-0.048702945843160705
LTETGSVFAF	10	Unmodified	_LTETGSVFAF_					0	0	0		ENSG00000179051|ENST00000375436|RCC2;ENST00000526625.2_1_11:62139723-62139795:+|nuORF	ENSG00000179051|ENST00000375436|RCC2	ENSG00000179051|ENST00000375436|RCC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.78466796875	2	536.27149	1070.52843	-0.2325	-0.00012468	0.18128	9.7216E-05	-0.051214	-2.7465E-05	536.2712812652588	56.22	0.61823	56.004	55.772	56.39	-0.21607					35	15	3	0	0	0	0.03519	1	6048	6048		35.618	0	1	1284300			48876	8864	33935	33988	54367	54367					-0.004016695135305781
LTETLISNR	9	Unmodified	_LTETLISNR_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.8123168945312	2	523.795663	1045.57677	1.2914	0.00067644	-1.4392	-0.00075384	-0.14776	-7.7396E-05	523.7948816224565	23.076	0.6447	22.885	22.479	23.124	-0.19117					13	9	2	0	0	0	0.024506	1	859	859		30.504	20.238	1	38654	+		48877	19302	33936	33989	54368	54368					0.055808241263775926
LTETLISNR	9	Unmodified	_LTETLISNR_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.795663	1045.57677	-0.38264	-0.00020043	0.93315	0.00048878	0.55051	0.00028835	523.795837679353	23.079	0.50806	22.893	22.507	23.015	-0.18539	0.045914	0.0010494	NaN	30.504	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31177	+		48878	19302	33936	33989							0.055808241263775926
LTEVLDTNW	9	Unmodified	_LTEVLDTNW_					0	0	0			REV__ENST00000515467.2_1_5:1572396-1576767:-|nuORF	REV__ENST00000515467.2_1_5:1572396-1576767:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3118286132812	2	545.774396	1089.53424	-1.1267	-0.00061494	2.1489	0.0011728	1.0221	0.00055784	546.2774147770313	44.66	0.39348	44.56	44.317	44.71	-0.099445					16	9	2	0	0	0	0.024323	1	4196	4196		53.351	0	1	75918	+		48879	20501	33937	33990	54369	54369					-0.006945710018953832
LTEVLKVM	8	Unmodified	_LTEVLKVM_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.7797546386719	2	466.777896	931.54124	0.51831	0.00024194	3.2294	0.0015074	3.7478	0.0017494	466.7794058213806	19.22	0.98703	19.059	18.787	19.774	-0.16079					48	19	4	0	0	0	0.68535	1	394	394		68.485	2.6815	1	1900500	+		48880	27366	33938	33991	54370	54370					0.07273070345013366
LTEVNKAGTQY	11	Unmodified	_LTEVNKAGTQY_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	612.3170776367188	2	612.31696	1222.61937	-1.4515	-0.00088881	1.5338	0.0009392	0.082294	5.039E-05	612.3177747508677	36.508	0.74396	36.303	36.056	36.8	-0.20518					57	18	5	0	0	0	3.5489E-24	3	2862	2862;2873;2888		294.93	151.05	1	3120100			48881	8053	33939	33992	54371;54372;54373	54371					0.01696174463972966
LTEVNKAGTQY	11	Unmodified	_LTEVNKAGTQY_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	612.3172607421875	2	612.31696	1222.61937	-0.17603	-0.00010778	0.24055	0.00014729	0.06452	3.9507E-05	612.316989902793	36.521	0.95177	36.304	36.05	37.002	-0.21661					57	23	4	0	0	0	1.3806E-23	3	2866	2856;2866;2881		284.62	137.84	1	3241700			48882	8053	33939	33992	54374;54375;54376	54375					0.01696174463972966
LTEVNKAGTQY	11	Unmodified	_LTEVNKAGTQY_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	612.317138671875	2	612.31696	1222.61937	1.3599	0.00083266	-1.3636	-0.00083498	-0.003779	-2.3139E-06	612.3160468143332	36.447	0.83911	36.249	36.016	36.855	-0.19829					62	20	4	0	0	0	1.2269E-23	3	2847	2839;2847;2860		256.48	127.06	1	2967200			48883	8053	33939	33992	54377;54378;54379	54378					0.01696174463972966
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.3226928710938	2	627.322242	1252.62993	-0.78938	-0.0004952	1.0798	0.00067738	0.29042	0.00018219	627.3227395052386	36.056	0.98455	35.85	35.581	36.566	-0.20518					59	26	4	0	0	0	1.946E-18	1	2792	2792		246.86	106.89	1	2386600			48884	4059	33940	33993	54380	54380					0.01372157118407813
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	627.3224487304688	2	627.322242	1252.62993	-0.72283	-0.00045345	1.0703	0.0006714	0.34744	0.00021795	627.3227768303889	36.069	0.75411	35.853	35.614	36.368	-0.21661					58	20	5	0	0	0	1.946E-18	2	2803	2791;2803		246.86	137.38	1	2757600			48885	4059	33940	33993	54381;54382	54382					0.01372157118407813
LTEVNKTGTQY	11	Unmodified	_LTEVNKTGTQY_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	627.3221435546875	2	627.322242	1252.62993	0.49244	0.00030892	-0.37161	-0.00023312	0.12083	7.5798E-05	627.3218734472692	35.981	0.91326	35.782	35.542	36.456	-0.19829					60	24	4	0	0	0	1.2269E-23	2	2760	2760;2772		256.48	147	1	2925800			48886	4059	33940	33993	54383;54384	54383					0.01372157118407813
LTEVTQSLK	9	Unmodified	_LTEVTQSLK_					0	0	0		nc|ENSG00000106052|Q86VP1-3|TAX1BP1;nc|ENSG00000106052|Q86VP1-4|TAX1BP1;nc|ENSG00000106052|Q86VP1-2|TAX1BP1;ENSG00000106052|ENST00000396319|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.7936706542969	2	509.792589	1017.57063	-0.34418	-0.00017546	1.521	0.00077537	1.1768	0.00059992	509.79327457745273	17.196	0.25274	16.989	16.863	17.116	-0.20669					9	4	3	0	0	0	0.85329	1	145	145		35.618	2.1027	1	76416			48887	2755	33941	33994	54385	54385					0.06254305894867684
LTEVTQSLK	9	Unmodified	_LTEVTQSLK_					0	0	0		nc|ENSG00000106052|Q86VP1-3|TAX1BP1;nc|ENSG00000106052|Q86VP1-4|TAX1BP1;nc|ENSG00000106052|Q86VP1-2|TAX1BP1;ENSG00000106052|ENST00000396319|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	509.792589	1017.57063	1.4032	0.00071532	0.061901	3.1557E-05	1.4651	0.00074688	509.7924543273995	17.235	0.35235	17.081	16.907	17.259	-0.15403	0.057549	3.875E-05	NaN	35.618	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242040			48888	2755	33941	33994							0.06254305894867684
LTEVTQSLK	9	Unmodified	_LTEVTQSLK_					0	0	0		nc|ENSG00000106052|Q86VP1-3|TAX1BP1;nc|ENSG00000106052|Q86VP1-4|TAX1BP1;nc|ENSG00000106052|Q86VP1-2|TAX1BP1;ENSG00000106052|ENST00000396319|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	nc|ENSG00000106052|Q86VP1-3|TAX1BP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.792589	1017.57063	4.8718	0.0024836	-3.3979	-0.0017322	1.4739	0.0007514	509.79073766474045	17.25	0.24649	16.999	16.881	17.128	-0.25049	-0.023599	-0.0034888	NaN	35.618	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24995			48889	2755	33941	33994							0.06254305894867684
LTEWDPLQTE	10	Unmodified	_LTEWDPLQTE_					0	0	0		nc|ENSG00000119650|Q96FT9-2|IFT43;ENSG00000119650|ENST00000314067|IFT43;ENST00000554026.5_1_14:76548780-76549917:+|nuORF	nc|ENSG00000119650|Q96FT9-2|IFT43	nc|ENSG00000119650|Q96FT9-2|IFT43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.2121276855469	3	411.199554	1230.57683	-0.27597	-0.00011348	4.4659	0.0018364	4.19	0.0017229	411.20152643000824	46.948	0.20242	46.754	46.577	46.779	-0.19387					6	5	2	0	0	0	0.03519	1	4541	4541		37.508	0	1	61528			48890	3750	33942	33995	54386	54386					-0.029232206642973324
LTFDFGLILHF	11	Unmodified	_LTFDFGLILHF_					0	0	0			REV__ENST00000492535.1_1_22:32886990-32887176:+|nuORF	REV__ENST00000492535.1_1_22:32886990-32887176:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.89276123046875	3	441.576296	1321.70706	-0.59098	-0.00026096	-2.9887	-0.0013198	-3.5797	-0.0015807	441.57479117384776	35.383	0.65555	35.167	34.95	35.606	-0.21555					25	16	2	0	0	0	0.024723	1	2648	2648		20.03	0	1	75850	+		48891	33742	33943	33996	54387	54387					0.05907420125390672
LTFGESLMTHA	11	Unmodified	_LTFGESLMTHA_					0	0	0		ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	604.3161010742188	2	603.794806	1205.57506	0.032368	1.9544E-05	-2.7546	-0.0016632	-2.7222	-0.0016437	603.7929538687056	56.946	1.1259	56.721	56.426	57.551	-0.2248					52	29	4	0	0	0	0.024747	1	6145	6145		24.519	0.99649	1	608310			48892	2911	33944	33997	54388	54388					-0.019505529538491828
LTFGQHKR	8	Unmodified	_LTFGQHKR_					0	0	0		ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.28863525390625	2	493.780151	985.545748	0.55373	0.00027342	3.1982	0.0015792	3.7519	0.0018526	493.77974451829857	58.255	1.2768	58.255	58.056	59.333	0					70	34	3	0	0	0	0.81662	2	6620	6620;6634		57.811	6.4758	1	15998000			48893	10714	33945	33998	54389;54390	54389					0.05239715602795059
LTFHSVIHF	9	Unmodified	_LTFHSVIHF_					0	0	0			REV__ENST00000440835.6_1_12:71032156-71032375:-|nuORF	REV__ENST00000440835.6_1_12:71032156-71032375:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3084716796875	2	550.798009	1099.58147	-0.58091	-0.00031996	-0.94142	-0.00051853	-1.5223	-0.0008385	550.7975667940025	49.975	1.401	49.975	49.176	50.577	0					64	39	3	0	0	0	0.024541	1	5163	5163		17.365	0	1	361370	+		48894	32533	33946	33999	54391	54391					0.035657530597973164
LTFHTGQPG	9	Unmodified	_LTFHTGQPG_					0	0	0		SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|24|1|anti-sense	SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|24|1|anti-sense	SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|24|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2590026855469	2	479.243067	956.47158	-0.85023	-0.00040747	1.4268	0.00068381	0.57661	0.00027634	479.24356716218136	55.606	0.62363	55.704	55.409	56.033	0.098015					38	16	3	0	0	0	0.023417	1	6062	6062		40.778	0	1	628530			48895	38033	33947	34000	54392	54392					-0.008396722793804656
LTFIFKSRT	9	Unmodified	_LTFIFKSRT_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.29541015625	2	556.826766	1111.63898	-0.68062	-0.00037899	-3.0743	-0.0017118	-3.7549	-0.0020908	556.824826744675	30.814	0.62214	30.826	30.292	30.914	0.011797					21	14	2	0	0	0	0.024447	1	1960	1960		49.442	17.487	1	173710	+		48896	36716	33948	34001	54393	54393					0.08762595265375239
LTFIVMFGT	9	Unmodified	_LTFIVMFGT_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-5|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-5|ABCA10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8165283203125	2	514.777896	1027.54124	-0.69385	-0.00035718	1.8554	0.00095513	1.1616	0.00059795	514.7790451587647	60.863	0.8706	60.65	60.079	60.95	-0.2134					31	22	2	0	0	0	0.024457	1	6904	6904		29.15	6.1071	1	696600	+		48897	24951	33949	34002	54394	54394					0.02857070345021384
LTFKAGEI	8	Unmodified	_LTFKAGEI_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.7528076171875	2	439.752736	877.490919	-0.39552	-0.00017393	0.75964	0.00033405	0.36412	0.00016012	439.75295794926075	23.441	0.93705	23.261	23.021	23.958	-0.17989					58	21	4	0	0	0	0.76379	1	931	931		62.107	1.8135	1	2502700			48898	5041	33950	34003	54395	54395					0.04727284011528354
LTFKAGEI	8	Unmodified	_LTFKAGEI_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.7527160644531	2	439.752736	877.490919	2.2082	0.00097105	-1.9228	-0.00084557	0.28534	0.00012548	439.7517476827268	23.455	1.0731	23.264	22.988	24.061	-0.19117					63	24	4	0	0	0	0.67154	1	918	918		69.628	5.4204	1	2578900			48899	5041	33950	34003	54396	54396					0.04727284011528354
LTFLDALAW	9	Unmodified	_LTFLDALAW_					0	0	0		ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2868041992188	2	525.286943	1048.55933	0.7973	0.00041881	0.28816	0.00015137	1.0855	0.00057018	525.2857721876723	54.554	1.166	54.347	53.881	55.047	-0.20613					72	31	4	0	0	0	0.55828	1	5802	5802		55.504	2.4152	1	2766100			48900	8995	33951	34004	54397	54397					0.03699528591369017
LTFLIYACYHM	11	Unmodified	_LTFLIYACYHM_					0	0	0		ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2;nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF	ENSG00000134955|ENST00000403796|SLC37A2	ENSG00000134955|ENST00000403796|SLC37A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2636413574219	3	458.89101	1373.6512	-0.035531	-1.6305E-05	-3.3423	-0.0015337	-3.3778	-0.00155	458.8892960694878	41.955	0.74345	41.832	41.527	42.271	-0.12299					54	19	4	0	0	0	0.024727	1	3754	3754		29.551	0	1	1197700			48901	4846	33952	34005	54398	54398					-0.02067872378120228
LTFLPPLP	8	Unmodified	_LTFLPPLP_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7535095214844	2	449.275847	896.537141	0.10527	4.7295E-05	1.2053	0.0005415	1.3105	0.00058879	449.27692651026007	65.522	0.13908	65.56	65.455	65.594	0.037376					5	3	2	0	0	0	0.027866	1	7676	7676		20.482	0	1	42384	+		48902	20688	33953	34006	54399	54399					0.08473348913616974
LTFLSIKKT	9	Unmodified	_LTFLSIKKT_					0	0	0			REV__ENSG00000187510|ENST00000344636|PLEKHG7	REV__ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.8300170898438	2	525.831517	1049.64848	-0.2741	-0.00014413	-2.4147	-0.0012697	-2.6888	-0.0014138	525.8301754652583	17.25	0.35266	17.043	16.913	17.265	-0.20669					13	6	3	0	0	0	0.96322	1	153	153		27.882	1.0861	1	132390	+		48903	27936	33954	34007	54400	54400					0.12564363550882263
LTFLSIKKT	9	Unmodified	_LTFLSIKKT_					0	0	0			REV__ENSG00000187510|ENST00000344636|PLEKHG7	REV__ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	525.831517	1049.64848	-0.2741	-0.00014413	-2.4147	-0.0012697	-2.6888	-0.0014138	525.8301754652583	17.25	0.35266	17.043	16.913	17.265	-0.20669	-0.045276	0.0010314	NaN	27.882	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132390	+		48904	27936	33954	34007							0.12564363550882263
LTFPFKILSD	10	Unmodified	_LTFPFKILSD_					0	0	0		ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	590.7542114257812	2	590.834257	1179.65396	-1.2171	-0.00071913	0.96363	0.00056935	-0.25351	-0.00014978	590.8345323036348	79.003	0.99969	78.826	78.521	79.521	-0.17664					47	23	3	0	0	0	0.03519	1	9805	9805		33.922	9.4024	1	256810			48905	7927	33955	34008	54401	54401					0.0713204234270961
LTFPFKILSD	10	Unmodified	_LTFPFKILSD_					0	0	0		ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	590.834257	1179.65396	-1.5505	-0.00091609	1.3259	0.0007834	-0.22458	-0.00013269	590.8346953618246	78.874	0.91512	78.874	78.658	79.573	0	0.077572	0.00084434	NaN	32.751	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271870			48906	7927	33955	34008							0.0713204234270961
LTFPFKILSD	10	Unmodified	_LTFPFKILSD_					0	0	0		ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	590.834257	1179.65396	0.36515	0.00021574	-0.70757	-0.00041806	-0.34242	-0.00020232	590.8335129978965	78.902	0.86579	78.921	78.609	79.475	0.018677	0.12463	-0.0015586	NaN	32.751	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361470			48907	7927	33955	34008							0.0713204234270961
LTFPFKILSD	10	Unmodified	_LTFPFKILSD_					0	0	0		ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	590.834257	1179.65396	-0.31091	-0.0001837	-0.065338	-3.8604E-05	-0.37625	-0.0002223	590.8339579036527	78.949	0.29977	78.694	78.514	78.814	-0.25471	-0.10204	-0.00079966	NaN	32.751	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70274			48908	7927	33955	34008							0.0713204234270961
LTFPFKILSD	10	Unmodified	_LTFPFKILSD_					0	0	0		ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	ENSG00000169313|ENST00000302632|P2RY12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	590.834257	1179.65396	-0.52443	-0.00030985	0.032478	1.9189E-05	-0.49195	-0.00029066	590.834519657791	78.822	0.30296	78.666	78.47	78.773	-0.15591	-0.12985	-0.00068407	NaN	32.751	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52066			48909	7927	33955	34008							0.0713204234270961
LTFRFELD	8	Unmodified	_LTFRFELD_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.7792358398438	2	520.7742	1039.53385	0.33382	0.00017384	-0.087477	-4.5556E-05	0.24634	0.00012829	520.7738768215027	86.326	0.43719	86.188	85.962	86.399	-0.13734					13	9	2	0	0	0	0.027866	1	10466	10466		14.865	0	1	142650	+		48910	22585	33956	34009	54402	54402					0.01566054068939593
LTFVLFHF	8	Unmodified	_LTFVLFHF_					0	0	0		ENST00000327367.8_1_15:67483489-67483636:+|nuORF	ENST00000327367.8_1_15:67483489-67483636:+|nuORF	ENST00000327367.8_1_15:67483489-67483636:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.28564453125	2	512.286746	1022.55894	-0.46197	-0.00023666	-1.1646	-0.00059663	-1.6266	-0.00083329	512.2860566914915	66.999	1.4448	66.754	66.618	68.063	-0.24517					51	36	3	0	0	0	1.0572	1	7700	7700		28.254	1.4582	1	1044100			48911	12293	33957	34010	54403	54403					0.0485615366218326
LTFVSDNFL	9	Unmodified	_LTFVSDNFL_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.8187255859375	2	528.274032	1054.53351	-0.33304	-0.00017594	1.821	0.00096198	1.4879	0.00078604	528.2747677201683	70.463	0.86769	70.191	69.531	70.399	-0.27185					25	21	2	0	0	0	0.024506	1	8174	8174		23.042	0	1	428020	+		48912	26412	33958	34011	54404	54404					0.008426343491009902
LTFWLKFRN	9	Unmodified	_LTFWLKFRN_					0	0	0			REV__ENSG00000159348|ENST00000367249|CYB5R1	REV__ENSG00000159348|ENST00000367249|CYB5R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	613.2577514648438	2	612.848033	1223.68151	0.75768	0.00046434	4.4875	0.0027502	5.2452	0.0032145	612.8506951362502	58.863	0.36636	58.675	58.462	58.829	-0.18705					23	9	3	0	0	0	0.024354	1	6638	6638		23.042	0	1	453320	+		48913	25248	33959	34012	54405	54405					0.07861990393598717
LTFYVVLC	8	Unmodified	_LTFYVVLC_					0	0	0		ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	ENSG00000203730|ENST00000367565|TEDDM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3006591796875	2	479.259339	956.504126	0.20964	0.00010047	-0.17388	-8.3335E-05	0.035756	1.7137E-05	479.2591896360168	33.394	0.48171	33.163	32.916	33.397	-0.23107					16	11	2	0	0	0	0.027866	1	2388	2388		26.796	0	1	180900			48914	10276	33960	34013	54406	54406					0.02413398799251354
LTGCDLYTDQ	10	Unmodified	_LTGCDLYTDQ_					0	0	0			REV__ENSG00000136040|ENST00000258526|PLXNC1	REV__ENSG00000136040|ENST00000258526|PLXNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.8056640625	2	564.747521	1127.48049	0.34095	0.00019255	2.6969	0.0015231	3.0378	0.0017156	564.7487969036598	55.555	0.99566	55.555	55.319	56.314	0					59	27	3	0	0	0	0.03519	1	6267	6267		22.58	1.6327	1	5943300	+		48915	23616	33961	34014	54407	54407					-0.07815111495892779
LTGDLVRFW	9	Unmodified	_LTGDLVRFW_					0	0	0		ENSG00000163121|ENST00000451794|NEURL3	ENSG00000163121|ENST00000451794|NEURL3	ENSG00000163121|ENST00000451794|NEURL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.3439331054688	2	553.803291	1105.59203	0.4684	0.0002594	2.267	0.0012555	2.7354	0.0015149	554.3074808748992	76.994	0.37568	76.742	76.528	76.903	-0.25162					10	8	2	0	0	0	0.024447	1	9164	9164		32.812	2.4947	1	84424			48916	7038	33962	34015	54408	54408					0.043457357142415276
LTGDTRLLF	9	Unmodified	_LTGDTRLLF_					0	0	0			REV__ENST00000548713.5_2_12:50135400-50136270:+|nuORF	REV__ENST00000548713.5_2_12:50135400-50136270:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2950439453125	2	518.295299	1034.57605	-0.043324	-2.2455E-05	-0.25128	-0.00013024	-0.29461	-0.00015269	518.2949875537913	34.416	0.55051	34.209	33.895	34.446	-0.20696					32	13	3	0	0	0	0.39228	1	2526	2526		66.429	0	1	1062500	+		48917	34882	33963	34016	54409	54409					0.06014029477319127
LTGEFTVE	8	Unmodified	_LTGEFTVE_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7454833984375	2	448.224008	894.433463	-0.86321	-0.00038691	1.9106	0.00085637	1.0474	0.00046946	448.22489568980114	47.456	0.3892	47.516	47.319	47.708	0.059097					18	11	3	0	0	0	0.027866	1	4685	4685		7.6903	0	1	134770			48918	5591	33964	34017	54410	54410					-0.017976029847091013
LTGENPLQVL	10	Unmodified	_LTGENPLQVL_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENST00000414617.1_1_21:34853889-34854420:-|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3082275390625	2	542.305864	1082.59717	-0.80549	-0.00043682	4.0599	0.0022017	3.2544	0.0017649	542.3076693305615	72.866	0.98965	72.866	72.373	73.362	0					62	24	4	0	0	0	1.0719	1	8892	8892		36.447	0.82846	1	1378900			48919	1761	33965	34018	54411	54411					0.05917994786182135
LTGETAYINL	10	Unmodified	_LTGETAYINL_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.2520751953125	2	547.790047	1093.56554	-1.0862	-0.00059501	0.34745	0.00019033	-0.73875	-0.00040468	547.7902596364188	52.204	0.67152	52.296	51.93	52.602	0.091938					41	16	4	0	0	0	0.03519	1	5491	5491		36.447	0	1	1168600	+		48920	23406	33966	34019	54412	54412					0.022500020322468117
LTGFIGLEV	9	Unmodified	_LTGFIGLEV_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7737731933594	2	474.773668	947.532783	1.1535	0.00054764	-1.3124	-0.00062307	-0.15888	-7.5433E-05	474.77297582327463	99.198	1.0987	99.198	98.647	99.746	0					64	24	3	0	0	0	0.83071	1	12693	12693		37.159	5.2042	1	2194500			48921	9366	33967	34020	54413	54413					0.056918397000458754
LTGGNKLTW	9	Unmodified	_LTGGNKLTW_					0	0	0			REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.25042724609375	2	495.274367	988.53418	0.44116	0.00021849	-3.2536	-0.0016114	-2.8124	-0.0013929	495.2734756100336	68.393	0.43766	68.15	67.992	68.43	-0.24277					16	10	2	0	0	0	0.024017	1	7948	7948		56.434	0	1	295830	+		48922	32430	33968	34021	54414	54414					0.03945473788792242
LTGHRLCFQPS	11	Unmodified	_LTGHRLCFQPS_					0	0	0		nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.7439880371094	3	420.216885	1257.62883	-0.74622	-0.00031357	-3.5196	-0.001479	-4.2658	-0.0017926	420.2153619118102	26.877	0.75571	26.958	26.671	27.427	0.081291					46	19	4	0	0	0	0.024742	1	1428	1428		25.892	5.8612	1	1681100			48923	18131	33969	34022	54415	54415					0.01031664268498389
LTGHRLCFQPS	11	Unmodified	_LTGHRLCFQPS_					0	0	0		nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	420.216885	1257.62883	-0.18527	-7.7852E-05	-4.1343	-0.0017373	-4.3196	-0.0018152	420.2151030858676	27.092	0.64641	27.092	26.825	27.471	0	0.097781	-0.00018964	NaN	25.892	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1923400			48924	18131	33969	34022							0.01031664268498389
LTGHRLCFQPS	11	Unmodified	_LTGHRLCFQPS_					0	0	0		nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	420.216885	1257.62883	-0.32838	-0.00013799	-4.1012	-0.0017234	-4.4296	-0.0018614	420.21509911642175	27.048	0.56924	27.035	26.745	27.314	-0.012983	0.041221	-0.0001479	NaN	25.892	45	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1696300			48925	18131	33969	34022							0.01031664268498389
LTGHRLCFQPS	11	Unmodified	_LTGHRLCFQPS_					0	0	0		nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	420.216885	1257.62883	-0.30524	-0.00012827	-4.0176	-0.0016883	-4.3229	-0.0018165	420.2150544470261	27.035	0.59352	26.867	26.506	27.099	-0.16816	-0.12725	-4.2488E-05	NaN	25.892	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139170			48926	18131	33969	34022							0.01031664268498389
LTGHRLCFQPS	11	Unmodified	_LTGHRLCFQPS_					0	0	0		nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	420.216885	1257.62883	-0.093389	-3.9244E-05	-4.8517	-0.0020388	-4.9451	-0.002078	420.21470293728356	27.175	0.59028	27.018	26.758	27.349	-0.15664	0.023996	-0.001094	NaN	25.892	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122370			48927	18131	33969	34022							0.01031664268498389
LTGHRPALW	9	Unmodified	_LTGHRPALW_					0	0	0		ENST00000607315.1_1_8:30013391-30013664:-|nuORF	ENST00000607315.1_1_8:30013391-30013664:-|nuORF	ENST00000607315.1_1_8:30013391-30013664:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.238037109375	2	525.795801	1049.57705	-0.81648	-0.0004293	-1.9055	-0.0010019	-2.722	-0.0014312	525.7947563905298	44.762	0.63715	44.509	44.072	44.709	-0.25252					22	16	2	0	0	0	0.024487	1	4164	4164		24.203	0	1	391760			48928	17577	33970	34023	54416	54416					0.05424288636891106
LTGIDPPL	8	Unmodified	_LTGIDPPL_					0	0	0			REV__ENSG00000077454|ENST00000310300|LRCH4	REV__ENSG00000077454|ENST00000310300|LRCH4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2376708984375	2	413.239461	824.46437	0.092707	3.831E-05	-3.0236	-0.0012495	-2.9309	-0.0012111	413.23811756919946	76.351	3.9324	76.183	74.993	78.925	-0.16853					174	94	3	0	0	0	1.0574	1	9072	9072		26.796	1.3459	1	809840	+		48929	20592	33971	34024	54417	54417					0.04511595120197853
LTGKARHS	8	Unmodified	_LTGKARHS_					0	0	0		ENST00000493862.5_1_22:38077834-38087340:+|nuORF;ENSG00000273899|ENST00000359114|NOL12	ENST00000493862.5_1_22:38077834-38087340:+|nuORF	ENST00000493862.5_1_22:38077834-38087340:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2510681152344	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.043	2	9638	9638;9792		30.504	1.3541	1	1590300			48930	11025	33972	34025	54418;54419	54418					0.04839453677379879
LTGLEPLAT	9	Unmodified	_LTGLEPLAT_					0	0	0		ENSG00000127399|ENST00000359623|LRRC61	ENSG00000127399|ENST00000359623|LRRC61	ENSG00000127399|ENST00000359623|LRRC61	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.7870788574219	2	457.7633	913.512048	0.53821	0.00024637	-3.82	-0.0017486	-3.2818	-0.0015023	457.7615022978248	20.793	0.49143	20.597	20.435	20.926	-0.19577					14	9	2	0	0	0	0.024506	1	613	613		23.042	0	1	41164			48931	4240	33973	34026	54420	54420					0.05183249320384675
LTGLLGSVSI	10	Unmodified	_LTGLLGSVSI_					0	0	0			REV__ENSG00000279111|ENST00000623167|OR10X1;REV__OR10X1|p.K277Sfs*11|1|0.08|ENSG00000279111|chr1:158579072-158579072|C/-|frameshift_variant	REV__ENSG00000279111|ENST00000623167|OR10X1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2929992675781	2	480.292225	958.569897	0.79244	0.0003806	-0.50092	-0.00024059	0.29152	0.00014002	480.29181884995944	86.766	0.8472	86.766	86.474	87.321	0					46	19	4	0	0	0	0.71272	1	10902	10902		66.429	16.988	1	663710	+		48932	29227;37307	33974	34027	54421	54421					0.08895511245816579
LTGLTYQS	8	Unmodified	_LTGLTYQS_					0	0	0		nc|ENSG00000232535|P0DN80|OR5H8	nc|ENSG00000232535|P0DN80|OR5H8	nc|ENSG00000232535|P0DN80|OR5H8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.7881164550781	2	441.732	881.449448	-0.71311	-0.000315	3.0775	0.0013594	2.3644	0.0010444	441.73335687947855	40.956	1.2019	40.725	40.378	41.58	-0.23029					70	31	4	0	0	0	0.027866	1	3537	3537		44.117	17.424	1	3055600			48933	18747	33975	34028	54422	54422					0.003981032521892303
LTGLVIANAGD	11	Unmodified	_LTGLVIANAGD_					0	0	0			REV__ENSG00000125124|ENST00000245157|BBS2	REV__ENSG00000125124|ENST00000245157|BBS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8108520507812	2	522.290214	1042.56587	-0.85823	-0.00044825	-2.2666	-0.0011838	-3.1248	-0.0016321	522.2913145179514	83.294	0.29567	83.321	83.173	83.469	0.026558					10	6	3	0	0	0	0.024759	1	10322	10322		47.96	12.341	1	53683	+		48934	22800	33976	34029	54423	54423					0.04629421752088092
LTGNEKNP	8	Unmodified	_LTGNEKNP_					0	0	0			REV__ENST00000380502.7_2_9:19086765-19087118:-|nuORF	REV__ENST00000380502.7_2_9:19086765-19087118:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.27386474609375	2	436.727249	871.439946	-0.43557	-0.00019023	-0.10745	-4.6927E-05	-0.54302	-0.00023715	436.726926191381	53.202	0.32965	53.055	52.873	53.203	-0.14723					11	8	2	0	0	0	0.027866	1	5691	5691		40.573	8.6178	1	75350	+		48935	31479	33977	34030	54424	54424					-0.0009166503333517539
LTGPALQW	8	Unmodified	_LTGPALQW_					0	0	0		ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.24456787109375	2	443.245078	884.475603	-0.18331	-8.1249E-05	0.25045	0.00011101	0.067143	2.9761E-05	443.2449957637863	73.967	0.68257	73.691	73.405	74.088	-0.2769					34	20	3	0	0	0	0.21344	2	8703	8703;8715		138.24	37.031	1	1710600			48936	4812	33978	34031	54425;54426	54425					0.028744172143206015
LTGPALQW	8	Unmodified	_LTGPALQW_					0	0	0		ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.244384765625	2	443.245078	884.475603	-0.11342	-5.0274E-05	0.31876	0.00014129	0.20534	9.1014E-05	443.2450169675328	73.938	0.55886	73.673	73.406	73.965	-0.26479					35	15	3	0	0	0	0.33369	2	8714	8714;8725		106.42	17.772	1	1749900			48937	4812	33978	34031	54427;54428	54427					0.028744172143206015
LTGPALQW	8	Unmodified	_LTGPALQW_					0	0	0		ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.2451477050781	2	443.245078	884.475603	0.32388	0.00014356	-0.085956	-3.8099E-05	0.23792	0.00010546	443.244869360903	73.846	0.51419	73.656	73.276	73.791	-0.19027					31	13	4	0	0	0	0.27193	2	8687	8677;8687		123.99	21.215	1	1790200			48938	4812	33978	34031	54429;54430	54430					0.028744172143206015
LTGPQKRR	8	Unmodified	_LTGPQKRR_					0	0	0		ENST00000426597.2_1_1:32705501-32706166:-|nuORF	ENST00000426597.2_1_1:32705501-32706166:-|nuORF	ENST00000426597.2_1_1:32705501-32706166:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.27813720703125	2	478.293425	954.572297	-0.55462	-0.00026527	3.8202	0.0018272	3.2656	0.0015619	478.2952211411898	81.113	0.55669	80.982	80.619	81.176	-0.13075					19	13	2	0	0	0	0.027866	1	10045	10045		16.473	0	1	216660			48939	14090	33979	34032	54431	54431					0.09319404494135597
LTGPRKQSA	9	Unmodified	_LTGPRKQSA_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2775573730469	2	479.277441	956.540328	0.1691	8.1046E-05	-0.42382	-0.00020313	-0.25472	-0.00012208	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.97455	1	9733	9733		25.574	1.07	1	1990900			48940	3375	33980	34033	54432	54432					0.060319920203255606
LTGPRKQSA	9	Unmodified	_LTGPRKQSA_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2774963378906	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.77768	2	10208	9990;10208		40.778	1.7567	1	7407200			48941	3375	33980	34033	54433;54434	54434					0.060319920203255606
LTGPRKQSA	9	Unmodified	_LTGPRKQSA_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27728271484375	2	479.277441	956.540328	0.41467	0.00019874	-1.4395	-0.00068993	-1.0249	-0.00049119	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	0.77768	1	10450	10450		40.778	5.1599	1	1015600			48942	3375	33980	34033	54435	54435					0.060319920203255606
LTGPWKLW	8	Unmodified	_LTGPWKLW_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1;ENST00000476656.1_1_6:70589459-70599853:+|nuORF	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2822570800781	2	500.78437	999.554188	-0.36874	-0.00018466	0.58423	0.00029257	0.21549	0.00010792	500.78487585772126	76.349	1.1958	76.18	75.703	76.899	-0.16854					37	28	3	0	0	0	0.68164	1	9056	9056		68.787	15.698	1	2189400			48943	1731	33981	34034	54436	54436					0.054392695194110274
LTGRPKQN	8	Unmodified	_LTGRPKQN_					0	0	0			REV__OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	REV__OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2643737792969	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.99042	2	10175	9959;10175		38.806	3.1879	1	2903100	+		48944	24374	33982	34035	54437;54438	54438					0.05435722848858404
LTGRPLPG	8	Unmodified	_LTGRPLPG_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7445983886719	2	405.745245	809.475937	0.18861	7.6528E-05	-0.60107	-0.00024388	-0.41246	-0.00016735	405.7448423000743	38.154	0.88727	38.181	37.884	38.771	0.027275					62	24	4	0	0	0	0.74904	1	3116	3116		63.306	2.3343	1	2458800	+		48945	29247	33983	34036	54439	54439					0.06357836934182615
LTGRPLPG	8	Unmodified	_LTGRPLPG_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	405.745245	809.475937	-0.18586	-7.541E-05	-0.24088	-9.7737E-05	-0.42674	-0.00017315	405.74498298335124	38.078	0.63062	38.078	37.803	38.433	0	0.012593	1.3111E-06	NaN	63.306	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2132300	+		48946	29247	33983	34036							0.06357836934182615
LTGRPLPG	8	Unmodified	_LTGRPLPG_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	405.745245	809.475937	-0.49284	-0.00019997	0.30582	0.00012408	-0.18702	-7.5883E-05	405.7452123764264	38.019	0.97102	37.937	37.636	38.607	-0.082516	-0.12835	0.00044495	NaN	63.306	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2203500	+		48947	29247	33983	34036							0.06357836934182615
LTGRPLPG	8	Unmodified	_LTGRPLPG_					0	0	0			REV__ENSG00000283599|ENST00000636096|unknown	REV__ENSG00000283599|ENST00000636096|unknown	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	405.745245	809.475937	0.18861	7.6528E-05	-0.60107	-0.00024388	-0.41246	-0.00016735	405.7448423000743	38.154	0.88727	38.181	37.884	38.771	0.027275	0.11576	-0.00029098	NaN	63.306	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2458800	+		48948	29247	33983	34036							0.06357836934182615
LTGSEFLYK	9	Unmodified	_LTGSEFLYK_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2825927734375	2	529.281857	1056.54916	0.19665	0.00010408	-0.17684	-9.36E-05	0.019804	1.0482E-05	529.2816093481064	83.748	1.2344	83.579	82.948	84.182	-0.16915					52	28	4	0	0	0	0.35646	1	10128	10128		68.787	10.005	1	730190	+		48949	22224	33984	34037	54440	54440					0.02314920866160719
LTGSEFLYK	9	Unmodified	_LTGSEFLYK_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2818603515625	2	529.281857	1056.54916	0.27724	0.00014674	-0.46167	-0.00024435	-0.18443	-9.7616E-05	529.2815217334794	83.747	0.80861	83.609	83.255	84.063	-0.1386					45	18	4	0	0	0	0.4752	1	10101	10101		60.972	4.2509	1	884400	+		48950	22224	33984	34037	54441	54441					0.02314920866160719
LTGSEFLYK	9	Unmodified	_LTGSEFLYK_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.281857	1056.54916	0.45255	0.00023952	-0.45331	-0.00023993	-0.00076456	-4.0467E-07	529.2814809165361	83.873	0.72161	83.662	83.308	84.029	-0.21159	0.045389	-7.2699E-05	NaN	68.787	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666550	+		48951	22224	33984	34037							0.02314920866160719
LTGSGLGGLPA	11	Unmodified	_LTGSGLGGLPA_					0	0	0			REV__ENST00000301634.11_1_17:76170530-76170602:-|nuORF	REV__ENST00000301634.11_1_17:76170530-76170602:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.28173828125	2	471.766374	941.518196	1.0856	0.00051215	-1.5956	-0.00075273	-0.50996	-0.00024058	471.7653806483802	51.39	0.38509	51.278	51.09	51.475	-0.11163					15	9	2	0	0	0	0.024768	1	5263	5263		56.721	12.344	1	298860	+		48952	30061	33985	34038	54442	54442					0.04509767551917321
LTGSGLGGLPA	11	Unmodified	_LTGSGLGGLPA_					0	0	0			REV__ENST00000301634.11_1_17:76170530-76170602:-|nuORF	REV__ENST00000301634.11_1_17:76170530-76170602:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.766374	941.518196	0.76328	0.00036009	-1.2488	-0.00058915	-0.48552	-0.00022905	471.7655221722609	51.483	0.62508	51.483	51.178	51.803	0	0.10733	-0.00026886	NaN	39.253	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620020	+		48953	30061	33985	34038							0.04509767551917321
LTGSGLGGLPA	11	Unmodified	_LTGSGLGGLPA_					0	0	0			REV__ENST00000301634.11_1_17:76170530-76170602:-|nuORF	REV__ENST00000301634.11_1_17:76170530-76170602:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.766374	941.518196	-0.18946	-8.9382E-05	-0.1438	-6.784E-05	-0.33326	-0.00015722	471.7659252559337	51.619	0.95095	51.471	50.794	51.745	-0.14735	0.095879	0.00077375	NaN	39.253	72	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042100	+		48954	30061	33985	34038							0.04509767551917321
LTGSKTGRID	10	Unmodified	_LTGSKTGRID_					0	0	0			REV__ENST00000476065.6_2_1:110230495-110230765:+|nuORF	REV__ENST00000476065.6_2_1:110230495-110230765:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	524.293288	1046.57202	0.62096	0.00032557	3.0282	0.0015876	3.6491	0.0019132	524.2948945162025	86.866	0.38446	86.724	86.495	86.879	-0.14217					12	8	2	0	0	0	0.03519	1	10575	10575		36.447	9.6506	1	221400	+		48955	33304	33986	34039	54443	54443					0.05059939983630102
LTGTINEDPE	10	Unmodified	_LTGTINEDPE_					0	0	0		ADAMTS4|p.G134E|1|0.22|ENSG00000158859|chr1:161198227-161198227|C/T|missense_variant	ADAMTS4|p.G134E|1|0.22|ENSG00000158859|chr1:161198227-161198227|C/T|missense_variant	ADAMTS4|p.G134E|1|0.22|ENSG00000158859|chr1:161198227-161198227|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.8001098632812	2	544.758943	1087.50333	-1.0611	-0.00057805	2.919	0.0015902	1.8579	0.0010121	544.7604493136553	45.112	0.54213	44.901	44.514	45.056	-0.21109					19	13	2	0	0	0	0.03519	1	4257	4257		29.17	10.067	1	157830			48956	28	33987	34040	54444	54444					-0.03691769106740139
LTGTLFAQP	9	Unmodified	_LTGTLFAQP_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2598876953125	2	474.263468	946.512382	0.24662	0.00011696	-0.18334	-8.6951E-05	0.063284	3.0014E-05	474.2631973061342	50.735	0.62587	50.554	50.172	50.797	-0.18071					22	16	2	0	0	0	0.024457	1	5166	5166		15.642	0	1	545740	+		48957	22148	33988	34041	54445	54445					0.03698669040238656
LTGVLSVLSL	10	Unmodified	_LTGVLSVLSL_					0	0	0			REV__ENSG00000157119|ENST00000287777|KLHL40	REV__ENSG00000157119|ENST00000287777|KLHL40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2904052734375	2	501.3157	1000.61685	0.48314	0.0002422	0.29047	0.00014562	0.77361	0.00038782	501.3158030856284	84.983	0.28899	84.78	84.63	84.919	-0.20329					10	6	2	0	0	0	0.03519	1	10292	10292		14.137	0	1	29099	+		48958	25115	33989	34042	54446	54446					0.11656370796947613
LTGVVAFILI	10	Unmodified	_LTGVVAFILI_					0	0	0			REV__ENSG00000090020|ENST00000263980|SLC9A1	REV__ENSG00000090020|ENST00000263980|SLC9A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2978515625	2	523.336436	1044.65832	-0.25965	-0.00013589	-1.1094	-0.00058057	-1.369	-0.00071646	523.3366513512761	86.857	0.20838	86.857	86.733	86.941	0					6	4	2	0	0	0	0.03519	1	10922	10922		21.96	3.6355	1	27921	+		48959	20867	33990	34043	54447	54447					0.13777551556290746
LTHCEEELL	9	Carbamidomethyl (C)	_LTHC(Carbamidomethyl (C))EEELL_	LTHC(1)EEELL		LTHC(58)EEELL		0	1	0			REV__ENSG00000159214|ENST00000372318|CCDC24	REV__ENSG00000159214|ENST00000372318|CCDC24	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.2701416015625	2	572.271164	1142.52777	-1.0237	-0.00058583	-0.70917	-0.00040584	-1.7329	-0.00099166	572.2706469274149	84.901	1.0795	84.926	84.579	85.659	0.025528					69	25	5	0	0	0	0.52323	1	10580	10580		57.811	6.4758	1	1229600	+		48960	25240	33991	34044	54448	54448	332				-0.03778832224884354
LTHCSLARA	9	Unmodified	_LTHCSLARA_					0	0	0		ENST00000489826.1_1_3:49847513-49847846:-|nuORF	ENST00000489826.1_1_3:49847513-49847846:-|nuORF	ENST00000489826.1_1_3:49847513-49847846:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2919006347656	2	486.258194	970.501834	0.37001	0.00017992	1.8789	0.00091363	2.2489	0.0010936	486.25837223334804	81.984	0.46817	81.755	81.437	81.905	-0.2289					15	10	3	0	0	0	0.024323	1	9877	9877		35.618	0	1	115800			48961	15421	33992	34045	54449	54449					0.01540363114156662
LTHDELISL	9	Unmodified	_LTHDELISL_					0	0	0		nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7837524414062	2	520.784764	1039.55498	-0.37783	-0.00019677	1.1458	0.00059671	0.76796	0.00039994	520.7851511269129	73.758	0.48461	73.487	73.204	73.688	-0.27126					25	12	3	0	0	0	0.83071	1	8993	8993		37.159	0	1	1308700			48962	4915	33993	34046	54450	54450					0.03678019377821329
LTHDITGAPP	10	Unmodified	_LTHDITGAPP_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2893371582031	2	511.269281	1020.52401	0.54876	0.00028057	-0.78834	-0.00040306	-0.23958	-0.00012249	511.2687049163597	50.961	0.63979	50.78	50.462	51.102	-0.18071					37	16	3	0	0	0	0.03519	1	5201	5201		23.042	0	1	962880			48963	186	33994	34047	54451	54451					0.014568660635518427
LTHELLALD	9	Unmodified	_LTHELLALD_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3106079101562	2	512.787307	1023.56006	-1.4332	-0.00073491	3.9269	0.0020137	2.4938	0.0012788	513.2888579848551	64.878	0.22053	64.878	64.8	65.02	0					6	5	2	0	0	0	0.024354	1	7661	7661		23.042	0	1	44070			48964	2631	33995	34048	54452	54452					0.04922323240418791
LTHGALSRII	10	Unmodified	_LTHGALSRII_					0	0	0			REV__ENST00000309865.11_1_16:22482951-22501641:+|nuORF	REV__ENST00000309865.11_1_16:22482951-22501641:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8314819335938	2	540.82984	1079.64513	-0.45582	-0.00024652	3.2955	0.0017823	2.8397	0.0015358	540.8316944739571	75.373	1.966	75.383	75.051	77.017	0.010376					182	50	6	0	0	0	1.0002	1	9273	9273		45.972	1.4412	1	103560000	+		48965	30170	33996	34049	54453	54453					0.10849113496897189
LTHHGTCSH	9	Unmodified	_LTHHGTCSH_					0	0	0		nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7662658691406	2	496.721975	991.429398	-0.83504	-0.00041478	0.015937	7.916E-06	-0.81911	-0.00040687	496.72206177013203	62.252	0.46062	62.074	61.883	62.343	-0.17781					19	11	2	0	0	0	0.024487	1	7001	7001		24.203	0	1	303110			48966	18719	33997	34050	54454	54454					-0.0666597095942052
LTHILDGSPE	10	Unmodified	_LTHILDGSPE_					0	0	0		nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000592329.1_1_17:73974613-73975103:-|nuORF;ENST00000591857.5_1_17:73953534-73975166:-|nuORF	nc|ENSG00000161533|Q15067|ACOX1	nc|ENSG00000161533|Q15067|ACOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8006591796875	2	541.279846	1080.54514	-0.33529	-0.00018149	0.76622	0.00041474	0.43093	0.00023325	541.2795124455353	59.03	0.28479	59.116	58.921	59.206	0.085682					11	7	2	0	0	0	0.03519	1	6642	6642		34.173	0	1	120230			48967	6877	33998	34051	54455	54455					0.008088313724329055
LTHIVTVLF	9	Unmodified	_LTHIVTVLF_					0	0	0			REV__ENSG00000136040|ENST00000258526|PLXNC1	REV__ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.81591796875	2	521.81841	1041.62227	-0.41245	-0.00021522	0.62561	0.00032645	0.21316	0.00011123	521.8185586576719	70.408	1.0348	70.136	69.364	70.399	-0.27185					68	25	4	0	0	0	0.52323	1	8166	8166		57.811	5.5121	1	2639200	+		48968	23616	33999	34052	54456	54456					0.1031209437940106
LTHIVTVLF	9	Unmodified	_LTHIVTVLF_					0	0	0			REV__ENSG00000136040|ENST00000258526|PLXNC1	REV__ENSG00000136040|ENST00000258526|PLXNC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7855834960938	2	521.81841	1041.62227	0.19659	0.00010258	-0.15758	-8.2229E-05	0.039007	2.0355E-05	521.8181488799634	70.317	1.1096	70.063	69.272	70.382	-0.25437					70	27	4	0	0	0	0.024262	1	8148	8148		47.916	20.033	1	2290600	+		48969	23616	33999	34052	54457	54457					0.1031209437940106
LTHIVTVLF	9	Unmodified	_LTHIVTVLF_					0	0	0			REV__ENSG00000136040|ENST00000258526|PLXNC1	REV__ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.8190307617188	2	521.81841	1041.62227	0.30277	0.00015799	-0.27836	-0.00014525	0.024405	1.2735E-05	521.8180965462368	70.287	1.0999	70.073	69.153	70.253	-0.21425					75	26	4	0	0	0	0.52323	1	8180	8180		57.811	15.337	1	2796000	+		48970	23616	33999	34052	54458	54458					0.1031209437940106
LTHKKHCLV	9	Unmodified	_LTHKKHCLV_					0	0	0			REV__ENST00000450917.1_1_2:3526678-3526861:+|nuORF	REV__ENST00000450917.1_1_2:3526678-3526861:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.8208618164062	2	539.813136	1077.61172	-1.2152	-0.00065598	-3.5092	-0.0018943	-4.7244	-0.0025503	539.8109893966696	64.858	0.86018	64.896	64.595	65.455	0.037384					46	23	3	0	0	0	0.024457	1	7554	7554		37.159	0	1	1108100	+		48971	32713	34000	34053	54459	54459					0.07601788453325753
LTHLLVPSGG	10	Unmodified	_LTHLLVPSGG_					0	0	0			REV__ENST00000318673.6_1_2:220033361-220034039:-|nuORF	REV__ENST00000318673.6_1_2:220033361-220034039:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25018310546875	2	497.290017	992.565481	-0.75571	-0.00037581	0.42962	0.00021365	-0.32609	-0.00016216	497.29005375846504	25.64	0.37152	25.413	25.231	25.602	-0.22683					15	8	2	0	0	0	0.03519	1	1223	1223		14.137	0	1	241020	+		48972	30312	34001	34054	54460	54460					0.068900468229117
LTHLPPLPS	9	Unmodified	_LTHLPPLPS_					0	0	0		nc|ENSG00000178460|Q4G0Z9-2|MCMDC2;nc|ENSG00000178460|Q4G0Z9-4|MCMDC2;ENST00000428734.5_1_8:67786448-67831401:+|nuORF;ENSG00000178460|ENST00000422365|MCMDC2	nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2980651855469	2	487.78711	973.559667	0.073839	3.6018E-05	0.42702	0.0002083	0.50086	0.00024431	487.7869552954482	58.416	0.32091	58.226	58.056	58.377	-0.19018					12	7	2	0	0	0	0.023596	1	6401	6401		73.975	38.356	1	267480			48973	8814	34002	34055	54461	54461					0.0718294831123103
LTHMHTHTC	9	Unmodified	_LTHMHTHTC_					0	0	0			REV__ENST00000264025.7_1_11:119534550-119534718:-|nuORF	REV__ENST00000264025.7_1_11:119534550-119534718:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7909545898438	2	540.739311	1079.46407	-0.74371	-0.00040215	-1.1352	-0.00061382	-1.8789	-0.001016	540.73850121307	66.383	0.42478	66.101	65.826	66.251	-0.28148					26	10	3	0	0	0	0.024487	1	7841	7841		17.365	0	1	1251600	+		48974	29708	34003	34056	54462	54462					-0.07248471142975177
LTHPGARA	8	Unmodified	_LTHPGARA_					0	0	0			REV__ENST00000427522.6_1_20:62190259-62190577:-|nuORF	REV__ENST00000427522.6_1_20:62190259-62190577:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.20892333984375	2	411.732669	821.450785	-0.28799	-0.00011857	0.61314	0.00025245	0.32516	0.00013388	411.73283394470434	40.973	0.46331	40.838	40.635	41.099	-0.13553					17	11	2	0	0	0	0.027866	1	3583	3583		11.511	0.64546	1	170860	+		48975	32299	34004	34057	54463	54463					0.032917821316118534
LTHPGARA	8	Unmodified	_LTHPGARA_					0	0	0			REV__ENST00000427522.6_1_20:62190259-62190577:-|nuORF	REV__ENST00000427522.6_1_20:62190259-62190577:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	411.732669	821.450785	-0.72017	-0.00029652	0.29881	0.00012303	-0.42135	-0.00017348	411.73290948209427	41.227	0.57792	40.997	40.696	41.274	-0.23029	0.070144	-8.9644E-05	NaN	11.511	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148200	+		48976	32299	34004	34057							0.032917821316118534
LTHPNQFSN	9	Unmodified	_LTHPNQFSN_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.8057250976562	2	529.256705	1056.49886	0.37887	0.00020052	-0.2739	-0.00014497	0.10497	5.5553E-05	529.758449434622	79.378	0.83803	79.132	78.609	79.447	-0.2465					28	19	2	0	0	0	0.024477	1	9431	9431		20.947	0	1	111590	+		48977	28144	34005	34058	54464	54464					-0.027131887389941767
LTHPNQFSN	9	Unmodified	_LTHPNQFSN_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.256705	1056.49886	-0.12244	-6.4802E-05	2.5858	0.0013686	2.4634	0.0013038	529.2584378862236	79.464	0.74538	79.245	78.748	79.494	-0.21922	0.056609	0.0020021	NaN	40.778	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137760	+		48978	28144	34005	34058							-0.027131887389941767
LTHPTTSDL	9	Unmodified	_LTHPTTSDL_					0	0	0			REV__ENST00000526183.5_1_8:145725999-145727283:+|nuORF	REV__ENST00000526183.5_1_8:145725999-145727283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2930603027344	2	492.753464	983.492375	-0.78022	-0.00038446	0.12518	6.1684E-05	-0.65504	-0.00032277	492.75356179144296	45.111	1.6795	44.962	44.422	46.102	-0.1488					57	48	2	0	0	0	0.024487	1	4511	4511		24.203	1.1603	1	246590	+		48979	25366	34006	34059	54465	54465					-3.126690376120678E-05
LTHQEVDVEGI	11	Unmodified	_LTHQEVDVEGI_					0	0	0			REV__nc|ENSG00000134057|P14635-2|CCNB1	REV__nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.8765869140625	3	413.878704	1238.61428	-0.14895	-6.1646E-05	-2.7291	-0.0011295	-2.878	-0.0011912	413.87667537461	29.925	1.5666	29.934	29.098	30.665	0.0086689					92	38	4	0	0	0	0.53842	1	1857	1857		73.841	24.305	1	3462200	+		48980	23415	34007	34060	54466	54466					0.004518706013413976
LTHRPKIL	8	Unmodified	_LTHRPKIL_					0	0	0		nc|ENSG00000105383|P20138-3|CD33;ENST00000601785.5_1_19:51728415-51738809:+|nuORF;nc|ENSG00000105383|P20138-2|CD33;ENSG00000105383|ENST00000262262|CD33	nc|ENSG00000105383|P20138-3|CD33	nc|ENSG00000105383|P20138-3|CD33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2657775878906	2	489.316369	976.618185	0.10048	4.9169E-05	3.1269	0.0015301	3.2274	0.0015792	489.3187036412822	55.979	0.50935	55.763	55.372	55.881	-0.21607					16	13	2	0	0	0	0.027866	1	6015	6015		82.305	0	1	137350			48981	2666	34008	34061	54467	54467					0.12894049676367558
LTHTHSRV	8	Unmodified	_LTHTHSRV_					0	0	0		ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000399916.5_1_1:25291100-25291430:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7923889160156	2	475.761958	949.509363	0.34744	0.0001653	-3.6389	-0.0017313	-3.2915	-0.001566	475.75968594596446	50.144	0.12526	50.144	50.052	50.178	0					6	3	2	0	0	0	0.027866	1	5227	5227		32.812	7.3622	1	119260			48982	13655	34009	34062	54468	54468					0.03258838706096867
LTIACSIIPQ	10	Unmodified	_LTIACSIIPQ_					0	0	0		ENST00000507232.5_1_5:169018105-169028825:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	529.8026123046875	2	529.79936	1057.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.687	1	61.758	61.258	62.258	0.071125								0	0	0	0.17578	1	7068	7068		101.6	8.4052	1				48983	15756	34010	34063	54469	54469					0.057678404024500196
LTIDVKPGW	9	Unmodified	_LTIDVKPGW_					0	0	0		ENSG00000187726|ENST00000339764|DNAJB13	ENSG00000187726|ENST00000339764|DNAJB13	ENSG00000187726|ENST00000339764|DNAJB13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.7926635742188	2	514.792392	1027.57023	0.30784	0.00015847	-0.23968	-0.00012339	0.068161	3.5089E-05	514.7921472124544	71.974	1.4515	71.712	71.403	72.855	-0.26199					86	34	5	0	0	0	0.42604	1	8438	8438		64.207	0	1	2121200			48984	9652	34011	34064	54470	54470					0.057549309656678815
LTIEGINLL	9	Unmodified	_LTIEGINLL_					0	0	0			REV__ENST00000366197.9_1_19:57910793-57911177:+|nuORF	REV__ENST00000366197.9_1_19:57910793-57911177:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3001708984375	2	493.30005	984.585547	-0.17516	-8.6407E-05	0.2696	0.00013299	0.09444	4.6587E-05	493.3000629523364	92.984	0.93122	92.991	92.461	93.393	0.0077286					38	21	3	0	0	0	0.62163	1	11718	11718		51.335	5.3835	1	1514500	+		48985	30968	34012	34065	54471	54471					0.09263797762855575
LTIERSRML	9	Oxidation (M)	_LTIERSRM(Oxidation (M))L_		LTIERSRM(1)L		LTIERSRM(74)L	0	0	1			REV__nc|ENSG00000187778|Q96EZ8-4|MCRS1	REV__nc|ENSG00000187778|Q96EZ8-4|MCRS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8165283203125	2	567.818615	1133.62268	-0.044236	-2.5118E-05	-3.0008	-0.0017039	-3.0451	-0.001729	567.8168046527879	42.693	0.93708	42.58	42.281	43.218	-0.11253					71	24	4	0	0	0	0.31037	1	3889	3889		74.255	6.7614	1	3972800	+		48986	27973	34013	34066	54472	54472		832			0.06121146036957725
LTIFMVVGMF	10	Unmodified	_LTIFMVVGMF_					0	0	0			REV__nc|ENSG00000132406|Q5BJH2-2|TMEM128	REV__nc|ENSG00000132406|Q5BJH2-2|TMEM128	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.260986328125	2	579.308506	1156.60246	-0.72045	-0.00041736	0.20847	0.00012077	-0.51198	-0.0002966	579.3085237385947	75.986	1.5717	75.728	74.906	76.477	-0.25865					93	38	6	0	0	0	0.03519	1	8927	8927		37.159	0	1	3942800	+		48987	23274	34014	34067	54473	54473					0.030422590528132787
LTIGMLSLL	9	Unmodified	_LTIGMLSLL_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2925720214844	2	480.793546	959.57254	0.19767	9.5041E-05	-0.067928	-3.2659E-05	0.12975	6.2381E-05	480.7935388941832	61.22	0.29924	61.291	61.095	61.394	0.071125					11	7	2	0	0	0	0.024506	1	7008	7008		30.504	0	1	436370	+		48988	28197	34015	34068	54474	54474					0.0911364337912346
LTIGVAVGGL	10	Unmodified	_LTIGVAVGGL_					0	0	0			REV__ENSG00000141314|ENST00000269051|RHBDL3	REV__ENSG00000141314|ENST00000269051|RHBDL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7734069824219	2	450.28166	898.548768	0.046864	2.1102E-05	0.067822	3.0539E-05	0.11469	5.1641E-05	450.2815219215963	78.625	1.0414	78.625	78.363	79.405	0					52	24	3	0	0	0	0.03519	1	9804	9804		37.159	15.199	1	635240	+		48989	24073	34016	34069	54475	54475					0.09543545936958253
LTIHQRTHS	9	Unmodified	_LTIHQRTHS_					0	0	0		nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2780151367188	2	546.799072	1091.58359	-0.44419	-0.00024288	1.5877	0.00086814	1.1435	0.00062525	546.7996996222591	62.324	0.35263	62.11	61.892	62.244	-0.21375					16	8	2	0	0	0	0.024535	1	7016	7016		7.1934	0	1	434000			48990	4438	34017	34070	54476	54476					0.0414618179761419
LTIIEHQLD	9	Unmodified	_LTIIEHQLD_					0	0	0		ENSG00000163885|ENST00000352312|CFAP100;nc|ENSG00000163885|Q494V2-2|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2799682617188	2	541.298039	1080.58152	-1.1149	-0.00060348	-1.7551	-0.00095005	-2.87	-0.0015535	541.8007747399641	45.094	0.17812	44.994	44.906	45.084	-0.099445					6	4	2	0	0	0	0.024436	1	4262	4262		23.042	0	1	45200			48991	7166	34018	34071	54477	54477					0.04445708269145143
LTIIGLIGAM	10	Unmodified	_LTIIGLIGAM_					0	0	0			REV__OR8J1|p.N42I|1|0.21|ENSG00000172487|chr11:56360371-56360371|A/T|missense_variant	REV__OR8J1|p.N42I|1|0.21|ENSG00000172487|chr11:56360371-56360371|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2900695800781	2	501.306821	1000.59909	0.71876	0.00036032	2.238	0.0011219	2.9568	0.0014823	501.30781257729296	85.286	0.70394	85.136	84.497	85.201	-0.14967					18	16	2	0	0	0	0.03519	1	10294	10294		37.159	6.6555	1	84450	+		48992	37332	34019	34072	54478	54478					0.09881332270447274
LTIILPED	8	Unmodified	_LTIILPED_					0	0	0		ENST00000509232.5_1_4:164057286-164087879:-|nuORF;nc|ENSG00000145414|Q96HR8-2|NAF1;ENSG00000145414|ENST00000274054|NAF1	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2642822265625	2	457.265676	912.516799	-0.37978	-0.00017366	-2.4937	-0.0011403	-2.8735	-0.0013139	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.97924	1	9922	9922		40.573	0	1	2920900			48993	15801	34020	34073	54479	54479					0.05704133463143535
LTIITSSLIP	10	Unmodified	_LTIITSSLIP_					0	0	0		ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7993774414062	2	529.328808	1056.64306	-1.0426	-0.00055186	-0.043153	-2.2842E-05	-1.0857	-0.00057471	529.3286539231057	83.838	0.47472	83.747	83.469	83.943	-0.090454					13	10	2	0	0	0	0.03519	1	10426	10426		27.882	0	1	122850			48994	8913	34021	34074	54480	54480					0.11700639968421456
LTIKALHVA	9	Unmodified	_LTIKALHVA_					0	0	0		ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7483825683594	2	483.310752	964.606951	-0.13616	-6.5809E-05	-0.18149	-8.7718E-05	-0.31766	-0.00015353	483.3106966257079	68.685	0.40549	68.704	68.499	68.904	0.018913					20	10	3	0	0	0	0.024381	1	8160	8160		37.159	11.709	1	147150			48995	3015	34022	34075	54481	54481					0.12323227582214713
LTILQCCP	8	Carbamidomethyl (C)	_LTILQC(Carbamidomethyl (C))CP_	LTILQC(0.5)C(0.5)P		LTILQC(0)C(0)P		0	1	0		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.238037109375	2	474.238081	946.461609	0.99265	0.00047075	-0.58368	-0.0002768	0.40896	0.00019395	474.2377559207591	72.353	0.88632	72.363	72.058	72.944	0.0097733					37	21	2	0	0	0	0.6248	1	8723	8723		73.975	10.996	2	1328800			48996	3528	34023	34076	54482	54482	43;44				-0.013763196006266298
LTILQCCP	8	Carbamidomethyl (C)	_LTILQC(Carbamidomethyl (C))CP_					0	1	0		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	474.238081	946.461609	1.1562	0.00054833	-0.43191	-0.00020483	0.72432	0.0003435	474.2377342674611	72.309	0.9318	72.309	71.978	72.91	0	-0.050528	0.00020273	NaN	73.975	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147300			48997	3528	34023	34076			43;44				-0.013763196006266298
LTILRCVF	8	Unmodified	_LTILRCVF_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7;ENST00000568469.5_1_16:19049201-19056398:+|nuORF	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7838134765625	2	482.786056	963.557558	0.15862	7.6582E-05	-3.5561	-0.0017169	-3.3975	-0.0016403	482.7841340513957	72.666	0.99342	72.675	72.371	73.365	0.009758					68	24	4	0	0	0	0.94517	1	8760	8760		45.952	1.4209	1	1708200			48998	8051	34024	34077	54483	54483					0.07432196301772365
LTILYDQSA	9	Unmodified	_LTILYDQSA_					0	0	0			REV__ENST00000528663.1_1_8:145675280-145675706:-|nuORF	REV__ENST00000528663.1_1_8:145675280-145675706:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2704467773438	2	512.27149	1022.52843	-0.053609	-2.7462E-05	-1.1778	-0.00060337	-1.2314	-0.00063083	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	0.89441	1	13261	13261		32.812	0.85756	1	4944800	+		48999	34496	34025	34078	54484	54484					0.018063304864767815
LTIMGDGLII	10	Unmodified	_LTIMGDGLII_					0	0	0			REV__ENSG00000164161|ENST00000296575|HHIP	REV__ENSG00000164161|ENST00000296575|HHIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.30322265625	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0271	1	10644	10644		42.396	0	1	14210000	+		49000	25708	34026	34079	54485	54485					0.06840724545236299
LTIPIKQMK	9	Unmodified	_LTIPIKQMK_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MSMS	OPSCC_40_ClassI_Rep-2	5	536.3353881835938	2	536.33337	1070.65219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.08	1	17.873	17.373	18.373	-0.20669								0	0	0	0.6291	1	252	252		35.618	5.1146	1		+		49001	25962	34027	34080	54486	54486					0.11968710053088216
LTIPQGMEV	9	Unmodified	_LTIPQGMEV_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11;nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.26300048828125	2	494.26261	986.510668	-0.15569	-7.695E-05	-0.94908	-0.0004691	-1.1048	-0.00054605	494.262256706685	74.923	0.87463	74.648	74.308	75.183	-0.27573					51	20	3	0	0	0	0.31037	1	8842	8842		74.255	4.6274	1	747830			49002	948	34028	34081	54487	54487					0.01687291959990489
LTIRAELW	8	Unmodified	_LTIRAELW_					0	0	0			REV__ENST00000472038.1_1_1:167599603-167633027:+|nuORF	REV__ENST00000472038.1_1_1:167599603-167633027:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2923278808594	2	501.292559	1000.57057	-0.56502	-0.00028324	-0.3457	-0.0001733	-0.91072	-0.00045654	501.2925730983912	57.332	1.441	57.165	56.323	57.764	-0.1672					184	37	9	0	0	0	0.68535	1	6326	6326		68.485	2.6815	1	59040000	+		49003	33193	34029	34082	54488	54488					0.07030350685522535
LTIRALPID	9	Unmodified	_LTIRALPID_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3135681152344	2	506.313492	1010.61243	-0.54367	-0.00027527	-1.5296	-0.00077445	-2.0733	-0.0010497	506.31352244677424	64.414	1.1433	64.151	63.578	64.722	-0.2626					79	30	4	0	0	0	0.67687	1	7575	7575		47.657	5.2612	1	3363100	+		49004	20735	34030	34083	54489	54489					0.1075490637402936
LTIRGCVI	8	Unmodified	_LTIRGCVI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant;nc|ENSG00000157423|Q4G0P3-5|HYDIN;nc|ENSG00000157423|Q4G0P3-6|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8813171386719	2	437.762581	873.510608	0.40771	0.00017848	-3.128	-0.0013693	-2.7203	-0.0011908	437.76105810473365	39.533	0.49508	39.308	39.132	39.627	-0.2257					14	12	2	0	0	0	0.027866	1	3341	3341		33.516	14.156	1	57933			49005	6595	34031	34084	54490	54490					0.06879336750637322
LTISVFNNVFS	11	Unmodified	_LTISVFNNVFS_					0	0	0			REV__ENST00000479647.1_1_3:196664263-196668636:-|nuORF	REV__ENST00000479647.1_1_3:196664263-196668636:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	620.8322143554688	2	620.832246	1239.64994	-0.7539	-0.00046804	0.49663	0.00030832	-0.25726	-0.00015972	620.8325633434613	61.738	0.70256	61.738	61.414	62.117	0					63	18	4	0	0	0	0.12397	1	7173	7173		107.01	0.32444	1	13020000	+		49006	33117	34032	34085	54491	54491					0.039699528490018565
LTIVAQDIK	9	Unmodified	_LTIVAQDIK_					0	0	0		nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.79296875	2	500.8055	999.596446	-0.3631	-0.00018184	0.3555	0.00017804	-0.0075966	-3.8044E-06	500.80557771391705	52.214	0.60851	52.03	51.705	52.314	-0.18404					19	15	2	0	0	0	0.023635	1	5356	5356		56.721	0	1	146460			49007	4562	34033	34086	54492	54492					0.09663200137129024
LTIVSWLN	8	Unmodified	_LTIVSWLN_					0	0	0		nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1	nc|ENSG00000105173|P24864-2|CCNE1	nc|ENSG00000105173|P24864-2|CCNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7867431640625	2	473.273835	944.533118	0.69956	0.00033108	0.30855	0.00014603	1.0081	0.00047711	473.27396672406024	87.14	1.3414	87.105	86.389	87.731	-0.035355					46	31	2	0	0	0	0.027866	1	10938	10938		35.618	0	1	59762			49008	2639	34034	34087	54493	54493					0.058632594199025334
LTKAQAWIA	9	Unmodified	_LTKAQAWIA_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7744445800781	2	501.292559	1000.57057	-0.39327	-0.00019714	0.65579	0.00032874	0.26252	0.0001316	501.29301324664436	30.042	0.7209	29.798	29.358	30.079	-0.24415					34	16	3	0	0	0	0.024323	1	1898	1898		35.618	14.671	1	253850			49009	908	34035	34088	54494	54494					0.07030350685511166
LTKAQAWIA	9	Unmodified	_LTKAQAWIA_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.292559	1000.57057	-0.44232	-0.00022173	0.23759	0.0001191	-0.20473	-0.00010263	501.29235051074556	29.92	0.6383	29.771	29.418	30.056	-0.14952	0.0091257	-0.00020311	NaN	35.618	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284680			49010	908	34035	34088							0.07030350685511166
LTKAVQGVLE	10	Unmodified	_LTKAVQGVLE_					0	0	0		IMPG1|p.H654Q|1|0.31|ENSG00000112706|chr6:75947396-75947396|G/T|missense_variant	IMPG1|p.H654Q|1|0.31|ENSG00000112706|chr6:75947396-75947396|G/T|missense_variant	IMPG1|p.H654Q|1|0.31|ENSG00000112706|chr6:75947396-75947396|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.27734375	2	529.316232	1056.61791	-0.7805	-0.00041313	0.99408	0.00052618	0.21358	0.00011305	529.3167805950114	69.591	0.41479	69.324	69.121	69.536	-0.26725					17	9	2	0	0	0	0.03519	1	8088	8088		51.193	7.0759	1	393830			49011	17767	34036	34089	54495	54495					0.09186585165844008
LTKCKLSSN	9	Unmodified	_LTKCKLSSN_					0	0	0			REV__ENSG00000151465|ENST00000281141|CDC123	REV__ENSG00000151465|ENST00000281141|CDC123	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7983093261719	2	497.273509	992.532466	-0.0075893	-3.7739E-06	-3.3979	-0.0016897	-3.4055	-0.0016935	497.27150418243224	34.175	0.28146	34.17	33.908	34.19	-0.0045624					9	6	2	0	0	0	0.024418	1	2482	2482		30.318	8.3578	1	209320	+		49012	24770	34037	34090	54496	54496					0.03590096708546753
LTKCKLSSN	9	Unmodified	_LTKCKLSSN_					0	0	0			REV__ENSG00000151465|ENST00000281141|CDC123	REV__ENSG00000151465|ENST00000281141|CDC123	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.273509	992.532466	-0.032979	-1.64E-05	-5.2135	-0.0025925	-5.2464	-0.0026089	497.27107622447124	34.363	0.23518	34.363	34.209	34.444	0	0.13023	-0.0010821	NaN	28.081	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142240	+		49013	24770	34037	34090							0.03590096708546753
LTKDNGLKV	9	Unmodified	_LTKDNGLKV_					0	0	0		CON__Q9TT36	CON__Q9TT36	CON__Q9TT36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7799987792969	2	494.295299	986.576045	-0.29794	-0.00014727	-1.9643	-0.00097094	-2.2622	-0.0011182	494.2949725574606	49.886	0.71056	49.966	49.699	50.409	0.080158					42	20	3	0	0	0	0.024418	1	5088	5088		37.812	0	1	957020		+	49014	574	34038	34091	54497	54497					0.08222029477337855
LTKDTKKQP	9	Unmodified	_LTKDTKKQP_					0	0	0		nc|ENSG00000134686|Q8IXK0-3|PHC2;ENST00000485928.5_1_1:33791428-33799821:-|nuORF;ENST00000467894.5_1_1:33790468-33797238:-|nuORF;nc|ENSG00000134686|Q8IXK0-2|PHC2;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENSG00000134686|ENST00000683057|PHC2	nc|ENSG00000134686|Q8IXK0-3|PHC2	nc|ENSG00000134686|Q8IXK0-3|PHC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2789306640625	2	529.813856	1057.61316	-0.88602	-0.00046943	4.001	0.0021198	3.1149	0.0016503	529.8161190786286	68.874	0.98672	68.874	68.56	69.547	0					56	25	3	0	0	0	0.02435	1	8340	8340		42.396	5.237	1	1265600			49015	15334	34039	34092	54498	54498					0.0866570102307378
LTKEELNKV	9	Unmodified	_LTKEELNKV_					0	0	0		ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENST00000508066.1_1_4:36162071-36231213:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2732543945312	2	537.313689	1072.61282	-0.70509	-0.00037885	-0.09645	-5.1824E-05	-0.80154	-0.00043068	537.3135831709551	36.64	0.7283	36.593	36.379	37.107	-0.047035					32	18	3	0	0	0	0.02438	1	2901	2901		38.754	0	1	324500			49016	15776	34040	34093	54499	54499					0.07942281303235177
LTKEHTLAE	9	Unmodified	_LTKEHTLAE_					0	0	0		ENSG00000176723|ENST00000315678|ZNF843	ENSG00000176723|ENST00000315678|ZNF843	ENSG00000176723|ENST00000315678|ZNF843	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8129272460938	2	521.282389	1040.55022	-0.24502	-0.00012772	0.1416	7.3812E-05	-0.10342	-5.3913E-05	521.281883329822	41.186	0.59812	41.209	40.83	41.429	0.023006					42	16	4	0	0	0	0.024484	1	3654	3654		12.207	0	1	408700			49017	8664	34041	34094	54500	54500					0.031571352350511006
LTKEICEIE	9	Unmodified	_LTKEICEIE_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.296142578125	2	539.278457	1076.54236	-1.3965	-0.00075313	1.7489	0.00094312	0.3523	0.00018999	539.2799386141661	58.398	0.20914	58.211	58.066	58.275	-0.18705					7	5	2	0	0	0	0.024427	1	6569	6569		51.335	0	1	85169	+		49018	22451	34042	34095	54501	54501					0.0071523992323818675
LTKELEDIK	9	Unmodified	_LTKELEDIK_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.795166015625	2	544.813522	1087.61249	-0.74883	-0.00040797	-2.2922	-0.0012488	-3.041	-0.0016568	544.8118735098633	55.532	0.53998	55.376	55.126	55.666	-0.15601					28	14	3	0	0	0	0.024156	1	6073	6073		76.17	28.512	1	334870			49019	10194	34043	34096	54502	54502					0.072188615833511
LTKELEDIK	9	Unmodified	_LTKELEDIK_					0	0	0		ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	ENSG00000198765|ENST00000369522|SYCP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.813522	1087.61249	-1.7381	-0.00094691	-0.14907	-8.1214E-05	-1.8871	-0.0010281	544.8132822918351	55.239	0.48275	55.337	55.116	55.598	0.098015	-0.019545	0.00046397	NaN	83.647	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414130			49020	10194	34043	34096							0.072188615833511
LTKEMLFF	8	Unmodified	_LTKEMLFF_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3093872070312	2	514.777896	1027.54124	-0.37601	-0.00019356	3.9055	0.0020105	3.5295	0.0018169	514.7797350661781	60.505	0.79735	60.299	59.975	60.772	-0.20599					31	19	2	0	0	0	0.027866	1	6751	6751		26.796	1.3459	1	248230	+		49021	23141	34044	34097	54503	54503					0.02857070345021384
LTKKKLQDL	9	Unmodified	_LTKKKLQDL_					0	0	0		nc|ENSG00000120656|Q16514-2|TAF12;ENST00000471683.5_1_1:28916264-28944539:-|nuORF;ENSG00000120656|ENST00000373824|TAF12;ENST00000263974.4_1_1:28944492-28944540:-|nuORF	nc|ENSG00000120656|Q16514-2|TAF12	nc|ENSG00000120656|Q16514-2|TAF12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.847412109375	2	543.847699	1085.68084	-1.6833	-0.00091544	1.2891	0.00070106	-0.39421	-0.00021439	543.8483119492604	21.11	0.78633	20.897	20.624	21.41	-0.2128					38	15	4	0	0	0	0.42604	1	598	598		64.207	0	1	724730			49022	3827	34045	34098	54504	54504					0.1414315095389611
LTKKKPNPNT	10	Unmodified	_LTKKKPNPNT_					0	0	0		ENSG00000185697|ENST00000522677|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2542724609375	2	570.840405	1139.66626	0.044265	2.5268E-05	-2.4985	-0.0014263	-2.4543	-0.001401	570.8390891015881	52.708	0.55958	52.581	52.391	52.951	-0.12705					33	13	3	0	0	0	0.03519	1	5464	5464		26.063	0.48933	1	579840			49023	9465	34046	34099	54505	54505					0.10201078805744146
LTKKLKLG	8	Unmodified	_LTKKLKLG_					0	0	0			REV__ENST00000416247.3_1_6:11134722-11134830:+|nuORF	REV__ENST00000416247.3_1_6:11134722-11134830:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.7743225097656	2	450.81567	899.616788	0.14678	6.617E-05	0.21902	9.8736E-05	0.3658	0.00016491	450.81548563621226	21.393	0.34278	21.202	21.029	21.372	-0.19072					9	6	2	0	0	0	0.027866	1	659	659		50.025	0	1	16352	+		49024	32073	34047	34100	54506	54506					0.16296415587601132
LTKKLNIH	8	Unmodified	_LTKKLNIH_					0	0	0			REV__nc|ENSG00000122550|Q8IXQ5-2|KLHL7	REV__nc|ENSG00000122550|Q8IXQ5-2|KLHL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.8085021972656	2	483.808377	965.6022	0.43798	0.0002119	-0.46777	-0.00022631	-0.029789	-1.4412E-05	483.8079363164059	21.217	0.76861	21.04	20.581	21.35	-0.17721					34	15	4	0	0	0	1.0338	1	655	655		31.955	0	1	501570	+		49025	36623	34048	34101	54507	54507					0.11802343439444485
LTKKQLKLD	9	Unmodified	_LTKKQLKLD_					0	0	0			REV__ENSG00000171060|ENST00000304519|C8orf74	REV__ENSG00000171060|ENST00000304519|C8orf74	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.8474731445312	2	543.847699	1085.68084	-0.11751	-6.3907E-05	-0.39927	-0.00021714	-0.51678	-0.00028105	543.8473957035973	20.955	0.67743	20.778	20.484	21.162	-0.17721					37	13	4	0	0	0	0.37611	2	613	601;613		67.494	0	1	723330	+		49026	26539	34049	34102	54508;54509	54509					0.14143150953873374
LTKKTCLTP	9	Unmodified	_LTKKTCLTP_					0	0	0		ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.30548095703125	2	502.794078	1003.5736	-0.28359	-0.00014259	-0.85776	-0.00043128	-1.1413	-0.00057386	502.79327368405416	52.45	0.77581	52.45	52.236	53.011	0					32	19	2	0	0	0	0.024319	1	5608	5608		47.657	1.6851	1	287160			49027	38173	34050	34103	54510	54510					0.071958577480018
LTKKTGLVK	9	Unmodified	_LTKKTGLVK_					0	0	0			REV__ENST00000447107.1_1_14:64821486-64821564:-|nuORF	REV__ENST00000447107.1_1_14:64821486-64821564:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.289794921875	2	494.331685	986.648816	0.20641	0.00010204	-3.3587	-0.0016603	-3.1523	-0.0015583	494.3299735794775	61.382	0.31491	61.453	61.355	61.67	0.071125					16	7	3	0	0	0	0.024523	1	7052	7052		21.96	0	1	319580	+		49028	32640	34051	34104	54511	54511					0.1549578327076233
LTKLAIVTI	9	Unmodified	_LTKLAIVTI_					0	0	0		ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29248046875	2	486.328611	970.642668	-0.75639	-0.00036785	1.1415	0.00055512	0.38507	0.00018727	486.32896302058276	77.697	1.0308	77.713	77.449	78.48	0.015907					56	24	3	0	0	0	0.024397	1	9564	9564		47.657	8.4045	1	598040			49029	13337	34052	34105	54512	54512					0.15617265039236372
LTKLLADSL	9	Unmodified	_LTKLLADSL_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12;ENST00000473174.1_2_9:116856172-116859990:-|nuORF	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.3002624511719	2	487.30005	972.585547	0.10767	5.247E-05	-0.95225	-0.00046403	-0.84457	-0.00041156	487.29940920685783	58.07	1.064	58.07	57.796	58.86	0					74	28	3	0	0	0	0.11092	1	6596	6596		108.09	3.3409	1	49582000			49030	18310	34053	34106	54513	54513					0.09815797762848888
LTKLLADSL	9	Unmodified	_LTKLLADSL_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12;ENST00000473174.1_2_9:116856172-116859990:-|nuORF	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.30145263671875	2	487.30005	972.585547	-0.65665	-0.00031999	-0.11526	-5.6165E-05	-0.77191	-0.00037615	487.29984913653556	58.01	1.3809	58.101	57.759	59.14	0.091217					100	37	3	0	0	0	0.20967	1	6532	6532		87.754	2.8388	1	46580000			49031	18310	34053	34106	54514	54514					0.09815797762848888
LTKLNLTATSK	11	Unmodified	_LTKLNLTATSK_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.8250122070312	2	595.36117	1188.70779	-0.1117	-6.6502E-05	3.3073	0.0019691	3.1956	0.0019026	595.3629247598459	77.12	0.37238	76.869	76.571	76.943	-0.25162					15	8	3	0	0	0	0.024771	1	9140	9140		35.152	0	1	166830			49032	8409	34054	34107	54515	54515					0.12098214774414373
LTKLVAIKG	9	Unmodified	_LTKLVAIKG_					0	0	0			REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7356262207031	2	471.820953	941.627353	-0.091987	-4.3401E-05	-0.35674	-0.00016832	-0.44872	-0.00021172	471.8205930499266	37.689	0.36421	37.721	37.525	37.889	0.032269					16	9	2	0	0	0	0.024541	1	3050	3050		11.511	0	1	117930	+		49033	29765	34055	34108	54516	54516					0.15420398242031297
LTKLVAIKG	9	Unmodified	_LTKLVAIKG_					0	0	0			REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.820953	941.627353	0.017157	8.0948E-06	-0.41221	-0.00019449	-0.39505	-0.00018639	471.8205935464346	37.615	0.42156	37.615	37.414	37.836	0	0.0016167	-0.00015428	NaN	11.511	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164640	+		49034	29765	34055	34108							0.15420398242031297
LTKLVAIKG	9	Unmodified	_LTKLVAIKG_					0	0	0			REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	REV__ENST00000266971.7_1_12:56391015-56391503:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.820953	941.627353	-0.27324	-0.00012892	0.10534	4.97E-05	-0.1679	-7.9219E-05	471.8208254215946	37.568	0.38736	37.504	37.268	37.655	-0.063385	-0.10929	0.0003341	NaN	11.511	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137410	+		49035	29765	34055	34108							0.15420398242031297
LTKLWLHLK	9	Unmodified	_LTKLWLHLK_					0	0	0			REV__UBTFL1|p.D285H|1|0.2|ENSG00000255009|chr11:90086802-90086802|G/C|missense_variant	REV__UBTFL1|p.D285H|1|0.2|ENSG00000255009|chr11:90086802-90086802|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8142700195312	2	576.368601	1150.72265	-0.59316	-0.00034188	1.2586	0.00072543	0.66546	0.00038355	576.3691944354487	46.952	1.1094	46.758	46.273	47.382	-0.19387					64	30	3	0	0	0	0.024209	1	4655	4655		56.721	14.325	1	416160	+		49036	37755	34056	34109	54517	54517					0.15331751433086538
LTKLWLHLK	9	Unmodified	_LTKLWLHLK_					0	0	0			REV__UBTFL1|p.D285H|1|0.2|ENSG00000255009|chr11:90086802-90086802|G/C|missense_variant	REV__UBTFL1|p.D285H|1|0.2|ENSG00000255009|chr11:90086802-90086802|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.368601	1150.72265	0.011446	6.5969E-06	0.72238	0.00041636	0.73383	0.00042295	576.3690157648235	46.725	1.2771	46.629	45.923	47.2	-0.096649	-0.1456	-0.00047173	NaN	56.721	55	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270950	+		49037	37755	34056	34109							0.15331751433086538
LTKLWLHLK	9	Unmodified	_LTKLWLHLK_					0	0	0			REV__UBTFL1|p.D285H|1|0.2|ENSG00000255009|chr11:90086802-90086802|G/C|missense_variant	REV__UBTFL1|p.D285H|1|0.2|ENSG00000255009|chr11:90086802-90086802|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.368601	1150.72265	-0.20054	-0.00011559	1.2497	0.00072026	1.0491	0.00060468	576.3691695685551	47.205	0.8661	46.936	46.561	47.427	-0.26939	0.16172	0.00013609	NaN	56.721	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303670	+		49038	37755	34056	34109							0.15331751433086538
LTKMASARGTV	11	Unmodified	_LTKMASARGTV_					0	0	0			REV__ENST00000605608.1_1_11:75480015-75484828:+|nuORF	REV__ENST00000605608.1_1_11:75480015-75484828:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8168334960938	2	567.818615	1133.62268	-0.22814	-0.00012954	-3.0097	-0.0017089	-3.2378	-0.0018385	567.8168119209503	42.856	0.97583	42.619	42.307	43.282	-0.23736					66	25	4	0	0	0	0.25893	1	3865	3865		93.143	2.3666	1	4103500	+		49039	35920	34057	34110	54518	54518					0.06121146036957725
LTKMCRKN	8	Unmodified	_LTKMCRKN_					0	0	0			REV__ENSG00000007168|ENST00000397195|PAFAH1B1	REV__ENSG00000007168|ENST00000397195|PAFAH1B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2685241699219	2	497.270247	992.525941	-0.39738	-0.00019761	-3.8053	-0.0018923	-4.2027	-0.0020899	497.26831478291894	35.326	1.0994	35.326	34.629	35.728	0					103	28	5	0	0	0	0.77775	1	2759	2759		60.972	3.1607	1	13547000	+		49040	19853	34058	34111	54519	54519					0.029378802761698353
LTKMGEETP	9	Unmodified	_LTKMGEETP_					0	0	0			REV__ENSG00000171903|ENST00000402119|CYP4F11	REV__ENSG00000171903|ENST00000402119|CYP4F11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.30548095703125	2	503.2497	1004.48485	-0.18513	-9.3165E-05	4.1932	0.0021102	4.0081	0.0020171	503.75376449313865	52.233	0.85896	52.233	51.736	52.595	0					24	22	2	0	0	0	0.02435	1	5608	5608		42.396	0	1	65406	+		49041	26615	34059	34112	54520	54520					-0.01721602282304957
LTKMLSGPKD	10	Unmodified	_LTKMLSGPKD_					0	0	0		ENST00000409331.6_1_2:85584249-85584309:+|nuORF	ENST00000409331.6_1_2:85584249-85584309:+|nuORF	ENST00000409331.6_1_2:85584249-85584309:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3026733398438	2	545.302267	1088.58998	-0.73895	-0.00040295	-0.61769	-0.00033683	-1.3566	-0.00073978	545.3016948033008	64.518	2.306	64.518	63.917	66.224	0					160	62	3	0	0	0	0.72729	1	7669	7669		65.465	3.358	1	11845000			49042	13774	34060	34113	54521	54521					0.049229389141146385
LTKMMEVDV	9	Unmodified	_LTKMMEVDV_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3110961914062	2	533.269578	1064.5246	-0.28792	-0.00015354	1.7608	0.00093898	1.4729	0.00078544	533.2706659654475	35.184	0.70641	34.968	34.548	35.255	-0.21555					26	17	2	0	0	0	0.024466	1	2683	2683		47.657	17.816	1	421580			49043	7526	34061	34114	54522	54522					-0.0050779860325746995
LTKMMEVDV	9	Unmodified	_LTKMMEVDV_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.269578	1064.5246	-0.75876	-0.00040463	3.4627	0.0018466	2.704	0.0014419	533.271361830054	35.05	0.54034	34.863	34.56	35.1	-0.18675	-0.055289	0.00064784	NaN	44.377	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449050			49044	7526	34061	34114							-0.0050779860325746995
LTKPKEKPLAS	11	Unmodified	_LTKPKEKPLAS_					0	0	0			REV__nc|ENSG00000175267|A6NCI4-2|VWA3A	REV__nc|ENSG00000175267|A6NCI4-2|VWA3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.3695678710938	2	606.371538	1210.72852	-2.2008	-0.0013345	-1.0933	-0.00066292	-3.2941	-0.0019974	606.3707256009532	92.689	2.8402	92.546	91.661	94.501	-0.14356					195	66	4	0	0	0	1.0017	1	11477	11477		36.447	6.129	1	701690	+		49045	26934	34062	34115	54523	54523					0.13158805154080255
LTKPPGLNM	9	Oxidation (M)	_LTKPPGLNM(Oxidation (M))_		LTKPPGLNM(1)		LTKPPGLNM(90)	0	0	1			REV__ENSG00000183617|ENST00000330133|MRPL54	REV__ENSG00000183617|ENST00000330133|MRPL54	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7681579589844	2	493.770603	985.526652	-0.33525	-0.00016553	-3.5625	-0.001759	-3.8977	-0.0019246	493.76877825094556	60.299	0.94078	60.045	59.643	60.584	-0.25374					58	23	3	0	0	0	0.19099	1	6675	6675		90.37	18.492	1	3513800	+		49046	27589	34063	34116	54524	54524		817			0.0333099819687277
LTKPQVLSN	9	Unmodified	_LTKPQVLSN_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7427062988281	2	500.295299	998.576045	-0.18737	-9.3742E-05	-0.079594	-3.9821E-05	-0.26697	-0.00013356	500.294619632346	56.835	0.23276	56.668	56.482	56.714	-0.1672					8	5	2	0	0	0	0.024506	1	6174	6174		10.866	0	1	82858	+		49047	28806	34064	34117	54525	54525					0.07670029477321805
LTKPRGKEP	9	Unmodified	_LTKPRGKEP_					0	0	0		ENST00000490768.1_1_1:161137040-161137992:+|nuORF;ENSG00000143224|ENST00000367999|PPOX	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.3077392578125	2	513.308741	1024.60293	-1.2784	-0.00065621	0.54683	0.00028069	-0.73157	-0.00037552	513.3091850084836	44.54	0.88549	44.393	44.16	45.046	-0.1469					39	25	3	0	0	0	0.29158	1	4241	4241		76.774	2.7994	1	3869000			49048	5622	34065	34118	54526	54526					0.09161138088529697
LTKPRSISFP	10	Unmodified	_LTKPRSISFP_					0	0	0		ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2576904296875	2	573.337498	1144.66044	0.16355	9.3772E-05	-0.79613	-0.00045645	-0.63258	-0.00036268	573.3370356445272	79.812	0.54523	79.592	79.327	79.873	-0.21923					29	12	3	0	0	0	0.03519	1	9563	9563		79.713	35.596	1	617390			49049	6435	34066	34119	54527	54527					0.0938998029407685
LTKQLESL	8	Unmodified	_LTKQLESL_					0	0	0		ENST00000585905.1_1_19:45898523-45909561:-|nuORF;ENSG00000104881|ENST00000360957|PPP1R13L	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2635803222656	2	466.276575	930.538597	-0.8405	-0.00039191	-0.4728	-0.00022045	-1.3133	-0.00061236	466.27538848571743	37.924	0.4315	37.703	37.466	37.898	-0.22149					22	11	3	0	0	0	0.027866	1	3093	3093		82.241	0	1	549930			49050	2612	34067	34120	54528	54528					0.07054938211717854
LTKQLESLW	9	Unmodified	_LTKQLESLW_					0	0	0		ENST00000585905.1_1_19:45898523-45909561:-|nuORF;ENSG00000104881|ENST00000360957|PPP1R13L	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.3145141601562	2	559.316232	1116.61791	-0.62302	-0.00034846	0.37444	0.00020943	-0.24858	-0.00013903	559.3163182942008	64.8	0.55521	64.597	64.263	64.818	-0.20254					24	13	2	0	0	0	0.030064	1	7388	7388		141.52	37.507	1	1374900			49051	2612	34068	34121	54529	54529					0.06426585165854704
LTKQLESLW	9	Unmodified	_LTKQLESLW_					0	0	0		ENST00000585905.1_1_19:45898523-45909561:-|nuORF;ENSG00000104881|ENST00000360957|PPP1R13L	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	559.316232	1116.61791	-1.2617	-0.00070567	0.3499	0.0001957	-0.91177	-0.00050997	559.3165422535845	64.762	0.71336	64.499	64.083	64.796	-0.2626	-0.14152	-0.00037267	NaN	141.52	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545610			49052	2612	34068	34121							0.06426585165854704
LTKQLESLW	9	Unmodified	_LTKQLESLW_					0	0	0		ENST00000585905.1_1_19:45898523-45909561:-|nuORF;ENSG00000104881|ENST00000360957|PPP1R13L	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	ENST00000585905.1_1_19:45898523-45909561:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.316232	1116.61791	-0.54995	-0.0003076	0.28489	0.00015935	-0.26506	-0.00014825	559.3162683049204	64.81	0.47258	64.576	64.295	64.768	-0.2345	-0.065279	-0.00044538	NaN	141.52	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1299100			49053	2612	34068	34121							0.06426585165854704
LTKQLSKAR	9	Unmodified	_LTKQLSKAR_					0	0	0		ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2896118164062	2	522.82984	1043.64513	-0.015532	-8.1206E-06	2.2571	0.0011801	2.2416	0.001172	522.8310232275703	57.209	0.43356	57.045	56.845	57.278	-0.16431					18	10	2	0	0	0	0.024447	1	6375	6375		32.812	0	1	122080			49054	12632	34069	34122	54530	54530					0.1250511349687713
LTKRLRLI	8	Unmodified	_LTKRLRLI_					0	0	0			REV__ENST00000609359.1_1_4:140335098-140374868:-|nuORF	REV__ENST00000609359.1_1_4:140335098-140374868:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81103515625	2	506.853119	1011.69168	-0.83377	-0.0004226	-3.1773	-0.0016104	-4.0111	-0.002033	506.85062095834957	54.674	0.22847	54.674	54.461	54.689	0					8	6	2	0	0	0	0.027866	1	5960	5960		38.806	0	1	81785	+		49055	35982	34070	34123	54531	54531					0.18630598118829766
LTKRQSEAGR	10	Unmodified	_LTKRQSEAGR_					0	0	0			REV__ENST00000461547.5_1_20:56185389-56190069:-|nuORF	REV__ENST00000461547.5_1_20:56185389-56190069:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.324951171875	2	573.322911	1144.63127	0.13955	8.0007E-05	1.7526	0.0010048	1.8922	0.0010848	573.3238622701145	107.09	0.58153	107.09	106.86	107.44	-0.003479					29	18	2	0	0	0	1.0816	1	13700	13700		35.152	2.3396	1	191700	+		49056	32879	34071	34124	54532	54532					0.0647383599780369
LTKSDAVK	8	Unmodified	_LTKSDAVK_					0	0	0			REV__ENSG00000104889|ENST00000221486|RNASEH2A	REV__ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.8860778808594	2	431.255643	860.496732	-0.31497	-0.00013583	4.4796	0.0019318	4.1646	0.001796	431.2579873678133	22.535	0.51257	22.535	22.245	22.757	0					12	10	2	0	0	0	0.027866	1	768	768		27.882	10.517	1	20158	+		49057	21479	34072	34125	54533	54533					0.06090382523188964
LTKSQREAR	9	Unmodified	_LTKSQREAR_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7899169921875	2	544.812179	1087.60981	-1.064	-0.00057971	0.63829	0.00034775	-0.42576	-0.00023196	544.812420094381	33.478	0.49429	33.478	33.321	33.816	0					22	13	2	0	0	0	0.024495	1	2449	2449		34.173	7.4796	1	125920			49058	6667	34073	34126	54534	54534					0.06950450969088706
LTKSRWNP	8	Unmodified	_LTKSRWNP_					0	0	0		ENST00000327473.8_1_19:4655256-4655514:+|nuORF	ENST00000327473.8_1_19:4655256-4655514:+|nuORF	ENST00000327473.8_1_19:4655256-4655514:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.31329345703125	2	501.279983	1000.54541	-0.085051	-4.2634E-05	-1.3212	-0.00066229	-1.4062	-0.00070492	501.2792943502282	76.338	1.1437	76.338	75.696	76.84	0					80	28	5	0	0	0	0.027866	1	9449	9449		51.335	14.176	1	6350500			49059	12294	34074	34127	54535	54535					0.04516295882945087
LTKSSLKW	8	Unmodified	_LTKSSLKW_					0	0	0		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2625732421875	2	481.78711	961.559667	-0.61418	-0.0002959	0.64432	0.00031043	0.030145	1.4524E-05	481.78725625693374	35.979	0.68584	36.017	35.652	36.338	0.038044					40	18	3	0	0	0	0.027866	1	2704	2704		42.474	34.784	1	725710			49060	4923	34075	34128	54536	54536					0.07734948311235712
LTKTDVIVIYG	11	Unmodified	_LTKTDVIVIYG_					0	0	0		MROH2B|p.M702I|1|0.27|ENSG00000171495|chr5:41038844-41038844|C/A|missense_variant	MROH2B|p.M702I|1|0.27|ENSG00000171495|chr5:41038844-41038844|C/A|missense_variant	MROH2B|p.M702I|1|0.27|ENSG00000171495|chr5:41038844-41038844|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.8575439453125	2	611.358096	1220.70164	-0.79597	-0.00048662	-2.4967	-0.0015264	-3.2927	-0.002013	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	0.99553	1	11707	11707		37.812	0	1	4189200			49061	17992	34076	34129	54537	54537					0.1001169654291516
LTKTPPTMI	9	Unmodified	_LTKTPPTMI_					0	0	0			REV__nc|ENSG00000136160|P24530-2|EDNRB	REV__nc|ENSG00000136160|P24530-2|EDNRB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2905578613281	2	501.288628	1000.5627	0.22779	0.00011419	3.221	0.0016146	3.4488	0.0017288	501.29014562829497	19.711	0.44313	19.551	19.331	19.774	-0.16079					19	8	3	0	0	0	0.75397	1	470	470		42.396	5.237	1	478830	+		49062	23633	34077	34130	54538	54538					0.06244455373712299
LTKVRPQP	8	Unmodified	_LTKVRPQP_					0	0	0			REV__ENST00000321930.4_17:78977795-78978311:+|nuORF	REV__ENST00000321930.4_17:78977795-78978311:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7820739746094	2	469.792727	937.5709	-0.26101	-0.00012262	0.30619	0.00014385	0.04518	2.1225E-05	469.79263977751134	29.747	0.68578	29.753	29.353	30.039	0.0056896					25	16	2	0	0	0	0.027866	1	1797	1797		10.866	0	1	144580	+		49063	30352	34078	34131	54539	54539					0.09961770405368497
LTLAKLEKV	9	Unmodified	_LTLAKLEKV_					0	0	0		ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29296875	2	507.831517	1013.64848	-0.41837	-0.00021246	1.7378	0.00088251	1.3194	0.00067005	508.3335180126514	52.395	0.27755	52.395	52.236	52.513	0					9	6	2	0	0	0	0.024541	1	5596	5596		18.262	0	1	52983			49064	5069	34079	34132	54540	54540					0.1422036355089631
LTLAKRQNL	9	Unmodified	_LTLAKRQNL_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7698364257812	2	528.82984	1055.64513	-0.65418	-0.00034595	-1.1056	-0.00058467	-1.7598	-0.00093062	528.8292423681253	40.121	0.48593	40.009	39.792	40.278	-0.11223					21	12	2	0	0	0	0.024405	1	3519	3519		35.618	0	1	435100			49065	8861	34080	34133	54541	54541					0.11953113496883816
LTLALCPCPT	10	Unmodified	_LTLALCPCPT_					0	0	0		ENST00000570069.5_1_16:1828464-1828845:+|nuORF	ENST00000570069.5_1_16:1828464-1828845:+|nuORF	ENST00000570069.5_1_16:1828464-1828845:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2845458984375	2	516.266838	1030.51912	-0.81451	-0.00042051	3.1444	0.0016233	2.3299	0.0012028	516.2670071057114	82.353	0.55138	82.379	82.065	82.616	0.025711					19	12	2	0	0	0	0.03519	1	10226	10226		58.782	9.3404	1	68268			49066	17019	34081	34134	54542	54542					0.005085226049232006
LTLAQLKH	8	Unmodified	_LTLAQLKH_					0	0	0			REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF	REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.28729248046875	2	462.287277	922.560001	-0.6167	-0.00028509	0.71714	0.00033153	0.10044	4.6432E-05	462.28747083981415	22.489	0.5514	22.304	22.094	22.646	-0.18539					25	11	3	0	0	0	1.043	1	810	810		30.504	3.7075	1	521640	+		49067	32565	34082	34135	54543	54543					0.09562368031095048
LTLAVPWESI	10	Unmodified	_LTLAVPWESI_					0	0	0		ENST00000586523.1_1_18:43667332-43667440:-|nuORF	ENST00000586523.1_1_18:43667332-43667440:-|nuORF	ENST00000586523.1_1_18:43667332-43667440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.2750244140625	2	564.818607	1127.62266	-0.32265	-0.00018224	-3.3711	-0.0019041	-3.6937	-0.0020863	564.8165926745415	54.631	1.0704	54.481	54.229	55.299	-0.15036					65	30	4	0	0	0	0.03519	1	6088	6088		32.812	5.7651	1	2459300			49068	17245	34083	34136	54544	54544					0.06395469308608881
LTLCCNRQ	8	Unmodified	_LTLCCNRQ_					0	0	0			REV__ENSG00000160445|ENST00000291900|ZER1	REV__ENSG00000160445|ENST00000291900|ZER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.792724609375	2	475.730954	949.447356	0.49258	0.00023434	-2.2128	-0.0010527	-1.7202	-0.00081837	475.7304402428458	50.043	0.45869	49.891	49.671	50.13	-0.1512					19	12	2	0	0	0	0.027866	1	5210	5210		30.504	0	1	124870	+		49069	25321	34084	34137	54545	54545					-0.02938972028914577
LTLCLFSR	8	Unmodified	_LTLCLFSR_					0	0	0		nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-5|MITF	nc|ENSG00000187098|O75030-6|MITF	nc|ENSG00000187098|O75030-6|MITF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2012939453125	2	476.767863	951.521173	-0.15375	-7.3305E-05	3.4407	0.0016404	3.287	0.0015671	476.76952765232863	40.384	0.33096	40.159	39.928	40.259	-0.225					11	8	2	0	0	0	0.027866	1	3481	3481		24.203	0	1	145160			49070	18600	34085	34138	54546	54546					0.043473194050761776
LTLDRSRIS	9	Unmodified	_LTLDRSRIS_					0	0	0			REV__ENSG00000168495|ENST00000306433|POLR3D	REV__ENSG00000168495|ENST00000306433|POLR3D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.810791015625	2	530.809105	1059.60366	0.0027698	1.4702E-06	1.0548	0.00055988	1.0575	0.00056135	530.8091803511924	61.74	0.75372	61.513	61.261	62.015	-0.22663					36	19	3	0	0	0	0.28753	1	7129	7129		77.318	15.21	1	1876600	+		49071	26265	34086	34139	54547	54547					0.0762393273755606
LTLEEIIGI	9	Unmodified	_LTLEEIIGI_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7989196777344	2	500.799883	999.585213	-1.2297	-0.00061585	-3.9328	-0.0019695	-5.1625	-0.0025854	500.7989152049129	93.322	2.1494	93.183	92.829	94.979	-0.13995					102	49	4	0	0	0	0.90698	1	11480	11480		31.955	1.4512	1	1721300			49072	790	34087	34140	54548	54548					0.08540378042994234
LTLEELLAVE	10	Unmodified	_LTLEELLAVE_					0	0	0		nc|ENSG00000198585|Q96DE0-3|NUDT16;nc|ENSG00000198585|Q96DE0-2|NUDT16;ENSG00000198585|ENST00000521288|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16	nc|ENSG00000198585|Q96DE0-3|NUDT16	nc|ENSG00000198585|Q96DE0-3|NUDT16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.3141479492188	2	565.32118	1128.62781	-0.87361	-0.00049387	1.1749	0.00066422	0.30133	0.00017035	565.3216242690868	36.875	0.43379	36.913	36.721	37.155	0.038044					26	10	3	0	0	0	0.03519	1	2886	2886		21.96	0	1	633930			49073	10153	34088	34141	54549	54549					0.06863728380562861
LTLEGIRQF	9	Unmodified	_LTLEGIRQF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2889404296875	2	538.808574	1075.60259	-0.69031	-0.00037194	-1.0558	-0.00056889	-1.7461	-0.00094083	538.8084978621513	65.356	0.69848	65.12	64.807	65.505	-0.23586					59	16	6	0	0	0	0.024367	1	7480	7480		62.107	23.301	1	1237900			49074	6905	34089	34142	54550	54550					0.06781718368665679
LTLEGIRQF	9	Unmodified	_LTLEGIRQF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2888793945312	2	538.808574	1075.60259	-1.6993	-0.00091558	0.24547	0.00013226	-1.4538	-0.00078332	538.809179901818	65.333	0.7386	65.13	64.778	65.516	-0.20253					53	17	5	0	0	0	0.02366	1	7478	7478		93.143	20.264	1	1170800			49075	6905	34089	34142	54551	54551					0.06781718368665679
LTLEGIRQF	9	Unmodified	_LTLEGIRQF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.28271484375	2	538.808574	1075.60259	-1.3103	-0.00070601	0.90426	0.00048722	-0.40606	-0.00021879	538.8090492225361	65.415	0.65567	65.164	64.864	65.52	-0.25112					35	15	3	0	0	0	0.02366	1	7446	7446		63.534	27.087	1	1243200			49076	6905	34089	34142	54552	54552					0.06781718368665679
LTLEKKNL	8	Unmodified	_LTLEKKNL_					0	0	0			REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF	REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2325439453125	2	479.800217	957.585882	0.00047667	2.2871E-07	-1.1232	-0.00053893	-1.1228	-0.0005387	479.7994889823817	31.013	0.28968	30.772	30.585	30.875	-0.24109					15	6	3	0	0	0	0.027866	1	2039	2039		38.806	0	1	492790	+		49077	32559	34090	34143	54553	54553					0.1053921748269886
LTLEQNFTK	9	Unmodified	_LTLEQNFTK_					0	0	0			REV__ENST00000396408.7_1_19:53912306-53912564:+|nuORF	REV__ENST00000396408.7_1_19:53912306-53912564:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2771606445312	2	547.298039	1092.58152	-0.6285	-0.00034398	-2.3204	-0.00127	-2.9489	-0.0016139	547.296779943485	27.86	0.31258	27.709	27.61	27.922	-0.15195					10	7	2	0	0	0	0.024487	1	1543	1543		40.573	0	1	120040	+		49078	31733	34091	34144	54554	54554					0.038937082691290925
LTLFFHCFIK	10	Unmodified	_LTLFFHCFIK_					0	0	0			REV__ENST00000491011.1_1_3:154032747-154042037:-|nuORF	REV__ENST00000491011.1_1_3:154032747-154042037:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.7268371582031	3	423.566855	1267.67874	-0.42729	-0.00018099	0.29209	0.00012372	-0.1352	-5.7267E-05	423.5670041431014	34.49	1.0238	34.486	34.19	35.214	-0.0045624					41	26	2	0	0	0	0.03519	1	2570	2570		27.047	10.517	1	950390	+		49079	33717	34092	34145	54555	54555					0.055603989444307445
LTLFPVRLL	9	Unmodified	_LTLFPVRLL_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3486938476562	2	536.349877	1070.6852	-0.30488	-0.00016352	0.30852	0.00016547	0.0036325	1.9483E-06	536.3498508120964	89.11	2.8213	89.126	87.676	90.497	0.015907					161	67	4	0	0	0	0.62163	1	11132	11132		51.335	0.14276	1	1184500			49080	6345	34093	34146	54556	54556					0.152686601674759
LTLFPVRLL	9	Unmodified	_LTLFPVRLL_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.3499755859375	2	536.349877	1070.6852	0.019356	1.0381E-05	-0.25915	-0.000139	-0.2398	-0.00012862	536.3495684200856	87.602	1.0125	87.466	87.136	88.148	-0.13613					65	24	4	0	0	0	0.29158	1	10675	10675		76.774	12.567	1	932110			49081	6345	34093	34146	54557	54557					0.152686601674759
LTLFPVRLL	9	Unmodified	_LTLFPVRLL_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.349877	1070.6852	0.0013527	7.2553E-07	-0.12981	-6.9625E-05	-0.12846	-6.8899E-05	536.34976404612	87.842	0.50994	87.806	87.573	88.083	-0.035362	0.23952	-0.00039879	NaN	76.774	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96030			49082	6345	34093	34146							0.152686601674759
LTLFTQLDI	9	Unmodified	_LTLFTQLDI_					0	0	0			REV__ENSG00000122870|ENST00000373886|BICC1	REV__ENSG00000122870|ENST00000373886|BICC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3078002929688	2	532.305332	1062.59611	1.0841	0.00057709	0.47301	0.00025179	1.5571	0.00082887	532.8074205201451	59.326	0.65448	59.126	58.923	59.577	-0.20016					43	17	3	0	0	0	0.02435	1	6712	6712		26.693	0	1	1238800	+		49083	22668	34094	34147	54558	54558					0.0673178041729443
LTLFWILI	8	Unmodified	_LTLFWILI_					0	0	0		ENST00000531361.1_1_1:26149550-26156105:+|nuORF	ENST00000531361.1_1_1:26149550-26156105:+|nuORF	ENST00000531361.1_1_1:26149550-26156105:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.6346740722656	2	509.820421	1017.62629	0.2024	0.00010319	2.3809	0.0012138	2.5833	0.001317	509.82165652456035	103.37	0.40086	103.2	103.08	103.48	-0.17034					14	9	2	0	0	0	0.027866	1	12869	12869		19.36	4.4951	1	104900			49084	16257	34095	34148	54559	54559					0.11818183873151611
LTLGAAVHG	9	Unmodified	_LTLGAAVHG_					0	0	0			REV__GDF2|p.S312L|1|0.4|ENSG00000263761|chr10:47325429-47325429|C/T|missense_variant	REV__GDF2|p.S312L|1|0.4|ENSG00000263761|chr10:47325429-47325429|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5302429199219	2	419.742702	837.470852	0.2647	0.00011111	0.15858	6.6565E-05	0.42328	0.00017767	419.7427362192389	23.306	0.69697	23.104	22.826	23.523	-0.20193					25	15	3	0	0	0	0.024466	1	895	895		7.1934	0	1	95572	+		49085	36066	34096	34149	54560	54560					0.045615330715691016
LTLGDRAR	8	Unmodified	_LTLGDRAR_					0	0	0		ENST00000558912.1_1_15:40631451-40632237:-|nuORF	ENST00000558912.1_1_15:40631451-40632237:-|nuORF	ENST00000558912.1_1_15:40631451-40632237:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.264404296875	2	451.264333	900.514114	0.033483	1.511E-05	-0.26774	-0.00012082	-0.23426	-0.00010571	451.26412952419776	33.082	0.85314	32.85	32.544	33.397	-0.23107					63	20	5	0	0	0	0.95679	1	2353	2353		44.117	5.3107	1	4935500			49086	16764	34097	34150	54561	54561					0.059877228488517176
LTLGLLTPN	9	Unmodified	_LTLGLLTPN_					0	0	0		nc|ENSG00000285253|Q6N043-4|ZNF280D	nc|ENSG00000285253|Q6N043-4|ZNF280D	nc|ENSG00000285253|Q6N043-4|ZNF280D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.26910400390625	2	471.286943	940.559333	0.23573	0.00011109	-0.17578	-8.2842E-05	0.059948	2.8253E-05	471.2865232993786	78.768	0.79585	78.768	78.323	79.119	0					27	18	3	0	0	0	0.024263	1	9696	9696		51.335	12.529	1	320150			49087	18815	34098	34151	54562	54562					0.08667528591365681
LTLGLVLLY	9	Unmodified	_LTLGLVLLY_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000484318.5_1_20:44985260-44987241:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.30810546875	2	502.823161	1003.63177	-0.03657	-1.8388E-05	1.874	0.00094229	1.8374	0.0009239	502.82257497610277	42.693	0.14995	42.58	42.464	42.614	-0.11253					5	3	2	0	0	0	0.024487	1	3866	3866		24.203	0	1	29256			49088	1682	34099	34152	54563	54563					0.13009862664955563
LTLGRRSNP	9	Unmodified	_LTLGRRSNP_					0	0	0			REV__ENST00000585457.5_1_17:42259005-42264009:-|nuORF	REV__ENST00000585457.5_1_17:42259005-42264009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7680969238281	2	507.296165	1012.57778	-0.98132	-0.00049782	2.5885	0.0013132	1.6072	0.00081534	507.29645741203177	61.04	0.46766	60.786	60.544	61.012	-0.25373					35	11	5	0	0	0	0.024381	1	6830	6830		29.15	2.4566	1	332040	+		49089	35576	34100	34153	54564	54564					0.07199083285945562
LTLHKLLL	8	Unmodified	_LTLHKLLL_					0	0	0			REV__nc|ENSG00000109163|P30968-2|GNRHR	REV__nc|ENSG00000109163|P30968-2|GNRHR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.79290771484375	2	475.823495	949.632438	0.38496	0.00018317	4.3232	0.0020571	4.7082	0.0022403	475.82457478076446	50.1	0.25625	50.1	49.986	50.242	0					10	7	2	0	0	0	0.027866	1	5241	5241		33.516	0	1	183610	+		49090	21785	34101	34154	54565	54565					0.15560702104676238
LTLHKYNSL	9	Unmodified	_LTLHKYNSL_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2;REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7902221679688	2	544.808574	1087.60259	-0.44944	-0.00024486	0.93898	0.00051156	0.48954	0.00026671	544.8088918576564	49.637	0.79129	49.637	49.324	50.116	0					46	21	4	0	0	0	0.023093	1	5096	5096		93.143	18.888	1	814090	+		49091	24384;34083	34102	34155	54566	54566					0.062297183686723656
LTLIGTTESF	10	Unmodified	_LTLIGTTESF_					0	0	0			REV__PCDH15|p.L663F|1|0.38|ENSG00000150275|chr10:54089994-54089994|G/A|missense_variant	REV__PCDH15|p.L663F|1|0.38|ENSG00000150275|chr10:54089994-54089994|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2896728515625	2	541.292422	1080.57029	-0.31231	-0.00016905	-3.3926	-0.0018364	-3.7049	-0.0020054	541.2904750181538	18.212	0.83672	18.08	17.663	18.499	-0.13147					28	16	2	0	0	0	1.089	1	255	255		34.173	2.2177	1	239570	+		49092	37354	34103	34156	54567	54567					0.03322886175010353
LTLILKGDI	9	Unmodified	_LTLILKGDI_					0	0	0			REV__ENST00000498148.5_1_1:31838735-31842263:-|nuORF	REV__ENST00000498148.5_1_1:31838735-31842263:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7641906738281	2	493.318243	984.621933	1.8444	0.00090987	-1.5958	-0.00078723	0.2486	0.00012264	493.3173134113302	74.455	0.66307	74.455	74.172	74.835	0					36	15	3	0	0	0	0.024374	1	9103	9103		32.812	0	1	376500	+		49093	22608	34104	34157	54568	54568					0.12900674659567812
LTLINYRL	8	Unmodified	_LTLINYRL_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.308349609375	2	503.30821	1004.60187	-0.99572	-0.00050116	1.0375	0.00052217	0.041754	2.1015E-05	503.3086225541142	65.353	1.3143	65.08	64.675	65.99	-0.27282					80	35	4	0	0	0	0.81662	1	7725	7725		57.811	1.0902	1	5350400	+		49094	28441	34105	34158	54569	54569					0.09974923719619255
LTLKKGKVL	9	Unmodified	_LTLKKGKVL_					0	0	0			REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3135986328125	2	500.349877	998.685202	-0.26371	-0.00013195	-1.3771	-0.00068905	-1.6408	-0.000821	500.349381937677	76.042	0.30909	75.874	75.703	76.012	-0.16854					13	7	2	0	0	0	0.024539	1	8986	8986		14.865	0	1	369920	+		49095	32830	34106	34159	54570	54570					0.18580660167481255
LTLKLSGYLTV	11	Unmodified	_LTLKLSGYLTV_					0	0	0			REV__ENST00000223273.6_1_7:39612324-39612471:+|nuORF	REV__ENST00000223273.6_1_7:39612324-39612471:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3646240234375	2	604.368464	1206.72238	-1.0438	-0.00063086	-1.6708	-0.0010098	-2.7146	-0.0016406	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.0104	1	13244	13244		25.126	0	1	4517100	+		49096	29365	34107	34160	54571	54571					0.12728286922560983
LTLKVFAM	8	Unmodified	_LTLKVFAM_					0	0	0			REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.23211669921875	2	461.775157	921.53576	0.41262	0.00019054	-0.37013	-0.00017092	0.042488	1.962E-05	461.774886057565	28.453	0.32757	28.534	28.329	28.657	0.080812					9	7	2	0	0	0	0.027866	1	1580	1580		8.2313	0	1	57768	+		49097	33718	34108	34161	54572	54572					0.0718539155320741
LTLLAPVVM	9	Unmodified	_LTLLAPVVM_					0	0	0		ENST00000437774.5_1_16:90039155-90044150:+|nuORF	ENST00000437774.5_1_16:90039155-90044150:+|nuORF	ENST00000437774.5_1_16:90039155-90044150:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26397705078125	2	478.796089	955.577625	-0.33511	-0.00016045	2.5799	0.0012352	2.2447	0.0010748	478.7978309692733	38.435	0.83084	38.435	38.071	38.902	0					52	22	3	0	0	0	0.024293	1	3274	3274		52.299	7.7681	1	1843400			49098	14299	34109	34162	54573	54573					0.09805947241738977
LTLLEKSPK	9	Unmodified	_LTLLEKSPK_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-2|CES5A	REV__nc|ENSG00000159398|Q6NT32-2|CES5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7606201171875	2	514.82115	1027.62775	0.46135	0.00023751	1.099	0.00056579	1.5604	0.00080331	514.8215699697203	70.514	0.471	70.514	70.316	70.787	0					17	10	2	0	0	0	0.024427	1	8548	8548		34.173	0	1	301640	+		49099	36827	34110	34163	54574	54574					0.11503773171239118
LTLLFYTYT	9	Unmodified	_LTLLFYTYT_					0	0	0			REV__ENSG00000186886|ENST00000641440|OR5D3P	REV__ENSG00000186886|ENST00000641440|OR5D3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.807708	1133.60086	-0.58457	-0.00033192	1.3393	0.00076047	0.75473	0.00042854	568.3105471302541	93.313	1.347	93.309	92.479	93.826	-0.0042038					67	31	4	0	0	0	0.024487	1	11730	11730		24.203	5.8783	1	413410	+		49100	27892	34111	34164	54575	54575					0.039406645600365664
LTLLHFLL	8	Unmodified	_LTLLHFLL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7442321777344	2	485.310221	968.605889	-0.10722	-5.2036E-05	-3.34	-0.0016209	-3.4472	-0.001673	485.3083554070502	62.002	0.89467	61.776	61.189	62.084	-0.22663					38	23	3	0	0	0	0.027866	1	7218	7218		37.028	0	1	803830			49101	5547	34112	34165	54576	54576					0.12033013213317645
LTLLHLLK	8	Unmodified	_LTLLHLLK_					0	0	0		ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	ENSG00000135093|ENST00000257548|USP30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7923889160156	2	475.823495	949.632438	0.44613	0.00021228	-0.47802	-0.00022745	-0.031888	-1.5173E-05	475.8231225492267	50.389	0.22195	50.238	50.065	50.287	-0.1512					9	6	2	0	0	0	0.027866	1	5233	5233		40.573	7.057	1	206890			49102	4859	34113	34166	54577	54577					0.1556070210466487
LTLLLEKVC	9	Unmodified	_LTLLLEKVC_					0	0	0			REV__ENSG00000152503|ENST00000513154|TRIM36	REV__ENSG00000152503|ENST00000513154|TRIM36	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3139038085938	2	516.312103	1030.60965	0.62813	0.00032431	2.0739	0.0010708	2.702	0.0013951	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	0.96906	1	12255	12255		26.693	2.1737	1	32395000	+		49103	24847	34114	34167	54578	54578					0.09557314924882121
LTLLLIQYSGT	11	Unmodified	_LTLLLIQYSGT_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3561401367188	2	611.358096	1220.70164	-0.81331	-0.00049722	-2.409	-0.0014728	-3.2224	-0.00197	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.0344	1	11996	11996		29.17	0	1	11166000	+		49104	24260	34115	34168	54579	54579					0.10011696542892423
LTLLLIQYSGT	11	Unmodified	_LTLLLIQYSGT_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3561401367188	2	611.358096	1220.70164	-0.45812	-0.00028007	-2.6812	-0.0016391	-3.1393	-0.0019192	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	0.94988	1	11658	11658		47.96	8.7067	1	13365000	+		49105	24260	34115	34168	54580	54580					0.10011696542892423
LTLLLLAVV	9	Unmodified	_LTLLLLAVV_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8337707519531	2	477.833529	953.652505	0.19865	9.4921E-05	0.15185	7.2557E-05	0.35049	0.00016748	477.833467546802	105.85	1.2379	105.85	105.54	106.78	0.00014496					116	43	4	0	0	0	1.0281	1	13546	13546		14.664	0.88877	1	2681800			49106	770	34116	34169	54581	54581					0.1738245304461543
LTLLLSVNLS	10	Unmodified	_LTLLLSVNLS_					0	0	0			REV__ENSG00000198763|ENST00000361453|MT-ND2	REV__ENSG00000198763|ENST00000361453|MT-ND2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.8300170898438	2	536.834257	1071.65396	-0.57882	-0.00031073	0.98933	0.00053111	0.41051	0.00022037	536.834597754992	49.343	0.68812	49.242	48.803	49.491	-0.1008					44	17	4	0	0	0	0.03519	1	4981	4981		19.104	4.9664	1	920220	+		49107	28469	34117	34170	54582	54582					0.12100042342717643
LTLLLVDEP	9	Unmodified	_LTLLLVDEP_					0	0	0		ENSG00000149476|ENST00000394900|TKFC;nc|ENSG00000149476|Q3LXA3-2|TKFC	ENSG00000149476|ENST00000394900|TKFC	ENSG00000149476|ENST00000394900|TKFC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3160400390625	2	506.799883	1011.58521	0.10535	5.339E-05	0.041987	2.1279E-05	0.14733	7.4669E-05	506.8003255619994	68.718	0.29771	68.734	68.533	68.831	0.015976					9	7	2	0	0	0	0.024506	1	8174	8174		30.504	3.7075	1	79144			49108	6091	34118	34171	54583	54583					0.07988378043000921
LTLLSKMCVI	10	Oxidation (M)	_LTLLSKM(Oxidation (M))CVI_		LTLLSKM(1)CVI		LTLLSKM(75)CVI	0	0	1			REV__ENST00000451442.5_3_20:24943788-24944004:-|nuORF	REV__ENST00000451442.5_3_20:24943788-24944004:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8258056640625	2	568.824521	1135.63449	0.093131	5.2975E-05	3.8222	0.0021741	3.9153	0.0022271	568.8265667246868	74.797	1.2606	74.538	74.028	75.289	-0.25887					86	30	4	0	0	0	0.61732	1	9138	9138		75.043	14.071	1	2711700	+		49109	32721	34119	34172	54584	54584		897			0.07209626735948405
LTLLTLLLL	9	Unmodified	_LTLLTLLLL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8110656738281	2	506.854461	1011.69437	0.55369	0.00028064	-1.1978	-0.00060712	-0.64412	-0.00032648	506.8553842753418	54.411	0.23237	54.509	54.393	54.626	0.098011					9	6	2	0	0	0	0.024294	1	5867	5867		29.15	0	1	41299			49110	6065	34120	34173	54585	54585					0.18899008733137634
LTLLVGLIL	9	Unmodified	_LTLLVGLIL_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.83355712890625	2	477.833529	953.652505	1.2397	0.00059239	-0.82252	-0.00039303	0.41722	0.00019936	477.83300080283107	105.72	1.0572	105.72	105.41	106.46	0					78	37	4	0	0	0	0.80658	1	13591	13591		38.806	0	1	749940	+		49111	28299	34121	34174	54586	54586					0.173824530446268
LTLLVGLIL	9	Unmodified	_LTLLVGLIL_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.8334045410156	2	477.833529	953.652505	0.44753	0.00021385	-0.10736	-5.13E-05	0.34018	0.00016255	477.8333134263394	105.5	0.66282	105.38	105.24	105.9	-0.12444					38	19	3	0	0	0	1.0365	1	13138	13138		12.959	0	1	313620	+		49112	28299	34121	34174	54587	54587					0.173824530446268
LTLLVRPANI	10	Unmodified	_LTLLVRPANI_					0	0	0			REV__ENST00000314888.9_1_9:35697397-35697580:-|nuORF	REV__ENST00000314888.9_1_9:35697397-35697580:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.3535766601562	2	555.355691	1108.69683	0.40846	0.00022684	-4.2963	-0.002386	-3.8878	-0.0021591	555.353141892147	99.697	0.72572	99.692	99.254	99.98	-0.0050888					43	16	4	0	0	0	1.0508	1	12676	12676		39.253	5.0803	1	951200	+		49113	30250	34122	34175	54588	54588					0.14682857190791765
LTLMAKVRCV	10	Unmodified	_LTLMAKVRCV_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.330304	1132.64606	0.34076	0.00019332	-1.2431	-0.00070523	-0.9023	-0.0005119	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0719	1	11272	11272		36.447	2.5251	1	4116000	+		49114	36747	34123	34176	54589	54589					0.08503868549951221
LTLMAKVRCV	10	Unmodified	_LTLMAKVRCV_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3294677734375	2	567.330304	1132.64606	-0.48805	-0.00027688	-0.73534	-0.00041718	-1.2234	-0.00069406	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.1286	1	11561	11561		25.574	0	1	14972000	+		49115	36747	34123	34176	54590	54590					0.08503868549951221
LTLMPLAML	9	Unmodified	_LTLMPLAML_					0	0	0		ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7903747558594	2	501.789949	1001.56535	0.39432	0.00019787	0.90557	0.0004544	1.2999	0.00065227	501.7903236977826	86.836	0.67462	86.836	86.561	87.236	0					28	15	2	0	0	0	0.36105	1	10925	10925		68.485	0	1	2224600			49116	6511	34124	34177	54591	54591					0.06462587507053286
LTLMPLAML	9	Unmodified	_LTLMPLAML_					0	0	0		ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7905578613281	2	501.789949	1001.56535	0.11433	5.7372E-05	0.8317	0.00041734	0.94604	0.00047471	501.790422872517	86.713	1.0219	86.734	86.157	87.178	0.021263					70	23	4	0	0	0	0.67308	1	10855	10855		47.916	0	1	2423900			49117	6511	34124	34177	54592	54592					0.06462587507053286
LTLNKKSRS	9	Unmodified	_LTLNKKSRS_					0	0	0		ENSG00000172969|ENST00000308062|FRG2C	ENSG00000172969|ENST00000308062|FRG2C	ENSG00000172969|ENST00000308062|FRG2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3058471679688	2	523.819473	1045.62439	-0.048495	-2.5402E-05	3.601	0.0018863	3.5525	0.0018609	523.821479438218	71.406	0.69024	71.131	70.743	71.433	-0.2751					28	15	3	0	0	0	0.024367	1	8357	8357		44.377	17.684	1	200640			49118	8329	34125	34178	54593	54593					0.1034052311722462
LTLNNYTDL	9	Unmodified	_LTLNNYTDL_					0	0	0			REV__ENSG00000169255|ENST00000320474|B3GALNT1	REV__ENSG00000169255|ENST00000320474|B3GALNT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7747802734375	2	533.774396	1065.53424	-1.1982	-0.00063957	1.4537	0.00077596	0.25553	0.00013639	533.7748788619867	84.263	1.4675	84.19	83.83	85.298	-0.072769					91	34	4	0	0	0	0.27161	1	10531	10531		79.451	2.6769	1	2577800	+		49119	26345	34126	34179	54594	54594					0.004094289981367183
LTLNQAAEVK	10	Unmodified	_LTLNQAAEVK_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.3333740234375	2	543.811313	1085.60807	-0.84109	-0.0004574	0.7609	0.00041379	-0.080194	-4.361E-05	544.3113803912416	96.548	0.98748	96.548	96.115	97.102	0					30	22	2	0	0	0	0.03519	1	12347	12347		33.922	0	1	39928	+		49120	20097	34127	34180	54595	54595					0.06869397160448898
LTLNQLIN	8	Unmodified	_LTLNQLIN_					0	0	0			REV__sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	REV__sp|P03197|BLRF2_EBVB9TegumentproteinBLRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLRF2PE=3SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.7744445800781	2	464.776742	927.538931	0.79679	0.00037033	-0.92622	-0.00043048	-0.12942	-6.0153E-05	464.77617105274163	51.174	0.54122	50.993	50.76	51.302	-0.18071					31	13	3	0	0	0	0.80469	1	5238	5238		58.782	4.0056	1	3101900	+		49121	37533	34128	34181	54596	54596					0.07226357931574512
LTLPGPGR	8	Unmodified	_LTLPGPGR_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7452087402344	2	405.745245	809.475937	1.5373	0.00062374	-0.82025	-0.00033281	0.71703	0.00029093	405.7446313913963	45.406	2.3016	45.45	44.966	47.267	0.043877					142	65	5	0	0	0	0.46709	1	4348	4348		88.643	3.2834	1	48799000	+		49122	20238	34129	34182	54597	54597					0.06357836934193983
LTLPGSLLIN	10	Unmodified	_LTLPGSLLIN_					0	0	0			REV__ENSG00000180739|ENST00000333430|S1PR5	REV__ENSG00000180739|ENST00000333430|S1PR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3114013671875	2	520.82115	1039.62775	-1.0669	-0.00055566	3.8868	0.0020243	2.8199	0.0014687	520.8232650880041	53.404	0.14268	53.257	53.203	53.346	-0.14723					5	3	2	0	0	0	0.03519	1	5757	5757		27.882	1.1893	1	76912	+		49123	27358	34130	34183	54598	54598					0.10951773171245804
LTLPLARLL	9	Unmodified	_LTLPLARLL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.30517578125	2	505.342052	1008.66955	-0.40484	-0.00020458	-0.33646	-0.00017003	-0.7413	-0.00037461	505.34175617802026	69.343	0.73956	69.358	69.094	69.834	0.015129					40	18	3	0	0	0	0.023635	1	8301	8301		76.774	0	1	397670			49124	5353	34131	34184	54599	54599					0.16556373650416845
LTLPLARLL	9	Unmodified	_LTLPLARLL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.342052	1008.66955	-0.58544	-0.00029585	0.49125	0.00024825	-0.094196	-4.7601E-05	505.342124515288	69.6	0.49937	69.332	69.121	69.62	-0.26725	0.060058	0.00088317	NaN	76.774	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185240			49125	5353	34131	34184							0.16556373650416845
LTLPLARLL	9	Unmodified	_LTLPLARLL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.342052	1008.66955	0.059845	3.0242E-05	-0.48652	-0.00024586	-0.42668	-0.00021562	505.3416233529706	69.466	0.40817	69.215	68.95	69.358	-0.25063	-0.057449	-0.00010504	NaN	76.774	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240800			49126	5353	34131	34184							0.16556373650416845
LTLPLARLL	9	Unmodified	_LTLPLARLL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.342052	1008.66955	-0.42784	-0.00021621	-0.17953	-9.0723E-05	-0.60737	-0.00030693	505.3418191519436	69.415	0.45387	69.193	68.978	69.432	-0.22245	-0.079687	0.00020523	NaN	76.774	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180300			49127	5353	34131	34184							0.16556373650416845
LTLPRLGEP	9	Unmodified	_LTLPRLGEP_					0	0	0			REV__ENSG00000223611|ENST00000486479|SUPT20HL2;REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2975769042969	2	498.297842	994.581131	-0.31179	-0.00015536	0.15293	7.6204E-05	-0.15886	-7.916E-05	498.2977287074927	61.844	0.97241	61.844	61.144	62.117	0					83	25	6	0	0	0	0.33245	1	7180	7180		71.296	4.8664	1	3636200	+		49128	28855;28853	34132	34185	54600	54600					0.0836233333996006
LTLPRLGEPTN	11	Unmodified	_LTLPRLGEPTN_					0	0	0			REV__ENSG00000223611|ENST00000486479|SUPT20HL2;REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MSMS	OPSCC_39_ClassI_Rep-1	1	404.23272705078125	3	404.231189	1209.67174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.471	1	81.471	80.971	81.971	0								0	0	0	1.3793	1	10151	10151		21.78	0.094677	1		+		49129	28855;28853	34133	34186	54601	54601					0.07528757597583535
LTLPRQSGG	9	Unmodified	_LTLPRQSGG_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.75360107421875	2	464.764166	927.513779	-0.4777	-0.00022202	0.20476	9.5166E-05	-0.27294	-0.00012685	464.76400429382596	23.319	0.48858	23.258	23.069	23.557	-0.06086					19	11	2	0	0	0	0.024477	1	913	913		27.882	15.675	1	139930			49130	6676	34134	34187	54602	54602					0.04712303129008433
LTLPRQSGG	9	Unmodified	_LTLPRQSGG_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.764166	927.513779	0.21066	9.7909E-05	-0.21716	-0.00010093	-0.0064979	-3.02E-06	464.7639152215878	23.203	0.75216	23.28	23.026	23.778	0.076239	0.0098967	0.00013277	NaN	40.778	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108180			49131	6676	34134	34187							0.04712303129008433
LTLPRQSGG	9	Unmodified	_LTLPRQSGG_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.764166	927.513779	0.28368	0.00013185	0.77924	0.00036216	1.0629	0.00049401	464.76446362347133	23.512	1.1797	23.31	22.967	24.147	-0.20193	0.039761	0.001059	NaN	40.778	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132870			49132	6676	34134	34187							0.04712303129008433
LTLPRQSGG	9	Unmodified	_LTLPRQSGG_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.764166	927.513779	-0.25801	-0.00011991	0.60661	0.00028193	0.3486	0.00016202	464.76415673547007	23.403	1.0274	23.223	22.975	24.002	-0.17989	-0.046564	0.00089849	NaN	40.778	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243190			49133	6676	34134	34187							0.04712303129008433
LTLPRQSGG	9	Unmodified	_LTLPRQSGG_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.764166	927.513779	1.6922	0.00078646	-1.4693	-0.00068287	0.2229	0.0001036	464.7633288900362	23.47	1.0731	23.278	22.988	24.061	-0.19117	0.0086524	-0.0010311	NaN	40.778	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239840			49134	6676	34134	34187							0.04712303129008433
LTLQEKLSI	9	Unmodified	_LTLQEKLSI_					0	0	0		ENSG00000169933|ENST00000675598|FRMPD4;nc|ENSG00000169933|Q14CM0|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	522.818607	1043.62266	0.28155	0.0001472	2.8306	0.0014799	3.1122	0.0016271	523.3222745343652	68.414	0.37434	68.433	68.198	68.573	0.018913					16	9	3	0	0	0	0.024017	1	8115	8115		56.434	0	1	134090			49135	7992	34135	34188	54603	54603					0.10259469308630287
LTLQLKFKV	9	Unmodified	_LTLQLKFKV_					0	0	0		ENST00000167106.8_2_14:77245571-77245688:+|nuORF	ENST00000167106.8_2_14:77245571-77245688:+|nuORF	ENST00000167106.8_2_14:77245571-77245688:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8209838867188	2	545.35516	1088.69577	0.94729	0.00051661	-2.8691	-0.0015647	-1.9218	-0.0010481	545.3552200627242	63.68	0.10638	63.734	63.662	63.768	0.054104					4	2	2	0	0	0	0.024447	1	7373	7373		25.574	0	1	39931			49136	11113	34136	34189	54604	54604					0.1549664282190406
LTLQNAQPL	9	Unmodified	_LTLQNAQPL_					0	0	0			REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2882080078125	2	499.287474	996.560395	0.7385	0.00036872	-1.2764	-0.0006373	-0.53791	-0.00026857	499.2868437970992	55.686	1.1057	55.686	55.319	56.424	0					76	30	3	0	0	0	0.29158	1	6139	6139		76.774	2.5191	1	25199000	+		49137	33904	34137	34190	54605	54605					0.061977429602734446
LTLQNAQPL	9	Unmodified	_LTLQNAQPL_					0	0	0			REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.2877502441406	2	499.287474	996.560395	-0.12558	-6.2702E-05	-0.44748	-0.00022342	-0.57306	-0.00028612	499.2872665484356	55.766	1.0869	55.61	55.16	56.247	-0.15601					73	29	3	0	0	0	0.12602	1	6129	6129		104.75	17.05	1	22451000	+		49138	33904	34137	34190	54606	54606					0.061977429602734446
LTLQNAQPL	9	Unmodified	_LTLQNAQPL_					0	0	0			REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.2877197265625	2	499.287474	996.560395	-0.8327	-0.00041576	0.28943	0.00014451	-0.54327	-0.00027125	499.287634578933	55.488	1.0259	55.586	55.183	56.209	0.098015					70	27	3	0	0	0	0.15029	1	6035	6035		99.375	9.0051	1	22365000	+		49139	33904	34137	34190	54607	54607					0.061977429602734446
LTLRDKVVK	9	Unmodified	_LTLRDKVVK_					0	0	0		ENST00000420734.1_1_1:87510839-87511187:-|nuORF	ENST00000420734.1_1_1:87510839-87511187:-|nuORF	ENST00000420734.1_1_1:87510839-87511187:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3494262695312	2	536.347866	1070.68118	-0.30488	-0.00016352	4.0586	0.0021768	3.7538	0.0020133	536.3498508120964	89.11	2.8213	89.126	87.676	90.497	0.015907					161	67	4	0	0	0	0.26966	1	11203	11203		79.713	10.085	1	1184500			49140	13980	34138	34191	54608	54608					0.1486657067375745
LTLSDAQET	9	Unmodified	_LTLSDAQET_					0	0	0			REV__nc|ENSG00000132704|Q96LA5-5|FCRL2	REV__nc|ENSG00000132704|Q96LA5-5|FCRL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2519836425781	2	489.242929	976.471305	-0.46135	-0.00022571	-1.5084	-0.00073799	-1.9698	-0.0009637	489.2418935395253	79.487	0.66114	79.505	79.192	79.853	0.018677					35	15	3	0	0	0	0.024487	1	9830	9830		17.365	0	1	321850	+		49141	23314	34139	34192	54609	54609					-0.017871367898919743
LTLSFFSDQCE	11	Unmodified	_LTLSFFSDQCE_					0	0	0			REV__ENST00000488015.5_1_7:87839874-87840006:-|nuORF	REV__ENST00000488015.5_1_7:87839874-87840006:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.26611328125	3	430.528794	1288.56455	-0.0029805	-1.2832E-06	3.2345	0.0013926	3.2315	0.0013913	430.5304049124205	23.593	1.09	23.413	23.157	24.247	-0.17989					84	25	7	0	0	0	0.024751	1	1014	1014		48.602	6.2635	1	5141100	+		49142	33630	34140	34193	54610	54610					-0.068185803989536
LTLSRKILQ	9	Unmodified	_LTLSRKILQ_					0	0	0			REV__ENSG00000175283|ENST00000372586|DOLK	REV__ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3495483398438	2	536.347866	1070.68118	-0.25949	-0.00013918	3.983	0.0021363	3.7235	0.0019971	536.3498599857834	88.986	2.943	88.986	87.651	90.594	0					145	70	3	0	0	0	0.2508	1	11285	11285		82.241	15.811	1	1357100	+		49143	26937	34141	34194	54611	54611					0.1486657067375745
LTLSRLKN	8	Unmodified	_LTLSRLKN_					0	0	0		ENST00000489797.1_1_13:73356473-73366636:+|nuORF	ENST00000489797.1_1_13:73356473-73366636:+|nuORF	ENST00000489797.1_1_13:73356473-73366636:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.8002014160156	2	472.798009	943.581465	0.60203	0.00028464	3.9515	0.0018682	4.5535	0.0021529	472.7997418850287	77.773	1.5665	77.773	77.469	79.035	0					102	37	4	0	0	0	0.6536	1	9629	9629		71.296	2.811	1	3021000			49144	15419	34142	34195	54612	54612					0.10741753059812709
LTLTAPWLP	9	Unmodified	_LTLTAPWLP_					0	0	0			REV__ENST00000488537.1_1_1:145440316-145440385:+|nuORF	REV__ENST00000488537.1_1_1:145440316-145440385:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.30517578125	2	506.29731	1010.58007	-0.38131	-0.00019305	1.2242	0.00061982	0.84292	0.00042677	506.29750814699725	69.503	0.86319	69.519	69.171	70.034	0.015121					49	21	3	0	0	0	0.024354	1	8301	8301		47.916	9.1095	1	1100900	+		49145	33648	34143	34196	54613	54613					0.07520118971035572
LTLTICFLK	9	Unmodified	_LTLTICFLK_					0	0	0		ENST00000520356.5_2_8:135490348-135490501:-|nuORF	ENST00000520356.5_2_8:135490348-135490501:-|nuORF	ENST00000520356.5_2_8:135490348-135490501:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.3145141601562	2	526.314646	1050.61474	-0.29529	-0.00015542	-0.091295	-4.805E-05	-0.38659	-0.00020347	526.3144987687056	75.049	2.2124	74.79	74.201	76.413	-0.25887					165	56	4	0	0	0	0.06122	1	9171	9171		124.59	18.179	1	16931000			49146	15976	34144	34197	54614	54614					0.09145618787465537
LTLTMKQVI	9	Oxidation (M)	_LTLTM(Oxidation (M))KQVI_		LTLTM(1)KQVI		LTLTM(59)KQVI	0	0	1		ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8140258789062	2	531.81501	1061.61547	-0.11038	-5.8701E-05	3.3846	0.0018	3.2743	0.0017413	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.50848	1	10626	10626		58.782	7.4465	1	4521600			49147	5823	34145	34198	54615	54615		247			0.0871241343654674
LTLTRSIQN	9	Unmodified	_LTLTRSIQN_					0	0	0			REV__chr14:22523654-22547506|212|12.78|0.0|20.29|+|0|TRAJ21,TRAC|2	REV__chr14:22523654-22547506|212|12.78|0.0|20.29|+|0|TRAJ21,TRAC|2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3040161132812	2	523.303655	1044.59276	-0.39587	-0.00020716	-0.06527	-3.4156E-05	-0.46114	-0.00024131	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.64897	1	10521	10521		49.536	1.8787	1	14072000	+		49148	19367	34146	34199	54616	54616					0.07224530363305348
LTLVAVCNG	9	Unmodified	_LTLVAVCNG_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.2453918457031	2	445.244221	888.473888	0.15502	6.9023E-05	-1.4148	-0.00062995	-1.2598	-0.00056092	445.24365249846375	102.82	0.81464	102.82	102.32	103.14	0.0054245					24	19	2	0	0	0	0.024436	1	13156	13156		23.042	0	1	801400	+		49149	20583	34147	34200	54617	54617					0.025190401340637436
LTLVDLVDL	9	Unmodified	_LTLVDLVDL_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7691650390625	2	500.799883	999.585213	-0.37134	-0.00018597	-1.7518	-0.00087731	-2.1232	-0.0010633	500.7991275308722	39.267	0.14915	39.041	38.983	39.132	-0.2257					6	3	2	0	0	0	0.023817	1	3297	3297		71.296	21.854	1	49321			49150	1112;18045	34148	34201	54618	54618					0.08540378042994234
LTLVEQLTV	9	Unmodified	_LTLVEQLTV_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.3049621582031	2	508.305332	1014.59611	-0.22438	-0.00011405	-0.18798	-9.5553E-05	-0.41236	-0.00020961	508.30510884182195	98.357	0.98793	98.192	98	98.988	-0.16521					51	22	3	0	0	0	0.16638	1	12192	12192		95.815	5.4453	1	513780	+		49151	28033	34149	34202	54619	54619					0.08939780417279053
LTLVRWPS	8	Unmodified	_LTLVRWPS_					0	0	0			REV__ENST00000358011.8_2_1:38156027-38156186:-|nuORF	REV__ENST00000358011.8_2_1:38156027-38156186:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.8056945800781	2	486.287277	970.560001	-0.23672	-0.00011512	1.272	0.00061856	1.0353	0.00050344	486.2883972552585	34.658	0.51574	34.479	34.29	34.806	-0.17865					19	12	2	0	0	0	0.027866	1	2599	2599		49.442	8.6634	1	148160	+		49152	30845	34150	34203	54620	54620					0.07354368031087688
LTLVTPEKAIK	11	Unmodified	_LTLVTPEKAIK_					0	0	0		ENSG00000177542|ENST00000628067|SLC25A22;ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9229736328125	3	404.923585	1211.74892	0.50474	0.00020438	-3.0148	-0.0012208	-2.51	-0.0010164	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.0563	1	1395	1395		23.378	1.5975	1	35253000			49153	8750	34151	34204	54621	54621					0.15151975813864738
LTLYLAVSLV	10	Unmodified	_LTLYLAVSLV_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3303833007812	2	546.339175	1090.6638	-0.0098201	-5.3651E-06	3.2076	0.0017524	3.1978	0.0017471	546.341580165744	104.15	0.42493	104.02	103.78	104.21	-0.12561					12	11	2	0	0	0	0.03519	1	12950	12950		20.947	0.4651	1	23691			49154	18758	34152	34205	54622	54622					0.12209230348094025
LTLYLAVSLV	10	Unmodified	_LTLYLAVSLV_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.339175	1090.6638	-0.54536	-0.00029795	2.9546	0.0016142	2.4092	0.0013163	546.3422859384946	104.29	0.396	104.29	104.07	104.47	0	0.084173	-0.00013887	NaN	20.947	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22212			49155	18758	34152	34205							0.12209230348094025
LTLYLAVSLV	10	Unmodified	_LTLYLAVSLV_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.339175	1090.6638	-0.60841	-0.0003324	3.0605	0.001672	2.452	0.0013396	546.3424294379669	104.3	0.45173	104.3	104.06	104.51	0.0031357	0.097222	-2.3212E-05	NaN	20.947	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39488			49156	18758	34152	34205							0.12209230348094025
LTLYLVVAVA	10	Unmodified	_LTLYLVVAVA_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000261934|ENST00000573521|PCDHGA9;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000253485|ENST00000518069|PCDHGA5;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;nc|ENSG00000253159|O60330-2|PCDHGA12;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2703857421875	2	531.333893	1060.65323	0.53827	0.000286	1.0891	0.00057867	1.6274	0.00086467	531.8355565596801	74.579	0.74625	74.579	74.128	74.875	0					25	17	3	0	0	0	0.03519	1	9110	9110		27.882	0	1	200490			49157	10959;10868;10877;10864;10857;10863	34153	34206	54623	54623					0.12533247693681915
LTMAFKKIL	9	Unmodified	_LTMAFKKIL_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7901000976562	2	532.830463	1063.64637	-0.60864	-0.0003243	1.428	0.00076086	0.81931	0.00043655	532.8317743413915	64.294	0.51363	64.032	63.827	64.341	-0.2626					19	13	2	0	0	0	0.024457	1	7496	7496		45.952	13.997	1	415370			49158	3383	34154	34207	54624	54624					0.11709611541459708
LTMATLRIN	9	Unmodified	_LTMATLRIN_					0	0	0			REV__ENSG00000151014|ENST00000280614|NOCT	REV__ENSG00000151014|ENST00000280614|NOCT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2720336914062	2	516.797152	1031.57975	-0.8214	-0.0004245	0.39381	0.00020352	-0.42759	-0.00022098	516.797236859733	48.32	0.82639	48.386	48.043	48.87	0.066799					53	22	3	0	0	0	0.024477	1	4932	4932		27.882	3.6795	1	1028100	+		49159	24744	34155	34208	54625	54625					0.06522375979557182
LTMFGHGG	8	Unmodified	_LTMFGHGG_					0	0	0		ENST00000274629.8_1_5:169816354-169816504:-|nuORF	ENST00000274629.8_1_5:169816354-169816504:-|nuORF	ENST00000274629.8_1_5:169816354-169816504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.5821838378906	2	410.194531	818.374509	0.29445	0.00012078	2.7069	0.0011104	3.0013	0.0012311	410.1961600464781	35.227	0.47378	35.227	34.981	35.455	0					27	12	3	0	0	0	0.027866	1	2673	2673		37.028	1.4102	1	253600			49160	11681	34156	34209	54626	54626					-0.04194357760013645
LTMINDIIP	9	Unmodified	_LTMINDIIP_					0	0	0			REV__ENST00000550426.5_1_12:47599871-47609950:-|nuORF	REV__ENST00000550426.5_1_12:47599871-47609950:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2716674804688	2	515.286085	1028.55762	-0.48355	-0.00024917	1.5681	0.00080803	1.0846	0.00055886	515.2874847159655	48.867	0.64318	48.714	48.398	49.041	-0.15277					41	17	4	0	0	0	0.024209	1	5018	5018		66.429	4.3219	1	1639300	+		49161	34903	34157	34210	54627	54627					0.044481515111101544
LTMKSVLLN	9	Unmodified	_LTMKSVLLN_					0	0	0			REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.80377197265625	2	509.801903	1017.58925	0.50937	0.00025968	3.0016	0.0015302	3.5109	0.0017899	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.70156	1	10678	10678		45.972	3.4978	1	2754700	+		49162	30415	34158	34211	54628	54628					0.08116144265079583
LTMKSVLLN	9	Unmodified	_LTMKSVLLN_					0	0	0			REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8036193847656	2	509.801903	1017.58925	-0.39701	-0.0002024	3.951	0.0020142	3.554	0.0018118	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	0.77768	1	10601	10601		40.778	1.5253	1	3182000	+		49163	30415	34158	34211	54629	54629					0.08116144265079583
LTMKSVLLN	9	Unmodified	_LTMKSVLLN_					0	0	0			REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8035888671875	2	509.801903	1017.58925	0.32253	0.00016443	2.8313	0.0014434	3.1539	0.0016078	509.8032631513967	83.402	2.5273	83.233	81.826	84.353	-0.16915					132	58	3	0	0	0	0.51687	1	10063	10063		58.23	3.4652	1	1049700	+		49164	30415	34158	34211	54630	54630					0.08116144265079583
LTMLAAMLE	9	Unmodified	_LTMLAAMLE_					0	0	0			REV__ENST00000465374.1_1_1:172349975-172350041:-|nuORF	REV__ENST00000465374.1_1_1:172349975-172350041:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.27655029296875	2	496.761389	991.508225	-0.37364	-0.00018561	-2.7869	-0.0013844	-3.1606	-0.00157	496.7599877059883	84.99	0.6229	85.015	84.662	85.285	0.025536					19	14	2	0	0	0	0.024457	1	10571	10571		21.96	0	1	174830	+		49165	33001	34159	34212	54631	54631					0.012131202306591149
LTMLCWMSY	9	Unmodified	_LTMLCWMSY_					0	0	0		ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.3013916015625	2	574.252874	1146.49119	0.023491	1.349E-05	-3.8125	-0.0021894	-3.7891	-0.0021759	574.2506092004862	67.89	0.69331	67.657	67.387	68.081	-0.23376					37	16	3	0	0	0	0.024506	1	7855	7855		16.473	3.514	1	669970			49166	9373	34160	34213	54632	54632					-0.076191236467821
LTMLIGHGF	9	Unmodified	_LTMLIGHGF_					0	0	0			REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.28289794921875	2	494.767863	987.521173	-0.47864	-0.00023681	0.094627	4.6819E-05	-0.38401	-0.00018999	494.7677764279117	40.545	1.1336	40.568	40.013	41.147	0.023006					72	31	3	0	0	0	0.024466	1	3446	3446		18.324	0	1	1126900	+		49167	20056	34161	34214	54633	54633					0.026913194050735
LTMLLPYQL	9	Unmodified	_LTMLLPYQL_					0	0	0			REV__ENSG00000172772|ENST00000395079|OR10W1	REV__ENSG00000172772|ENST00000395079|OR10W1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.313720703125	2	546.312103	1090.60965	-0.51669	-0.00028227	2.2275	0.0012169	1.7108	0.00093464	546.3138348140509	45.462	1.1673	45.362	44.868	46.036	-0.099445					119	32	6	0	0	0	0.072054	3	4298	4298;4309;4345		120.62	10.501	1	15784000	+		49168	26709	34162	34215	54634;54635;54636	54634					0.06797314924870079
LTMLLPYQL	9	Unmodified	_LTMLLPYQL_					0	0	0			REV__ENSG00000172772|ENST00000395079|OR10W1	REV__ENSG00000172772|ENST00000395079|OR10W1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.3141479492188	2	546.312103	1090.60965	-0.24517	-0.00013394	2.2831	0.0012473	2.0379	0.0011134	546.3135849347806	45.64	1.197	45.388	45.124	46.321	-0.25252					107	32	6	0	0	0	0.072054	2	4354	4318;4354		120.62	10.501	1	13593000	+		49169	26709	34162	34215	54637;54638	54638					0.06797314924870079
LTMLRRHL	8	Unmodified	_LTMLRRHL_					0	0	0			REV__nc|ENSG00000171843|P42568-2|MLLT3	REV__nc|ENSG00000171843|P42568-2|MLLT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2689208984375	2	520.313303	1038.61205	-1.5623	-0.00081288	-3.3686	-0.0017527	-4.9309	-0.0025656	520.3114625765829	75.363	0.8105	75.363	74.995	75.806	0					46	21	3	0	0	0	0.027866	1	9193	9193		76.847	2.5916	1	1239900	+		49170	26608	34163	34216	54639	54639					0.09429208173196457
LTMLRTLLLE	10	Oxidation (M)	_LTM(Oxidation (M))LRTLLLE_		LTM(1)LRTLLLE		LTM(58)LRTLLLE	0	0	1		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.90869140625	3	406.909058	1217.70534	0.43289	0.00017615	-2.0346	-0.00082791	-1.6017	-0.00065176	406.9081629561266	55.497	1.2967	55.266	54.963	56.259	-0.23087					92	35	4	0	0	0	0.83648	1	5971	5971		58.246	6.0791	1	4107200			49171	6965	34164	34217	54640	54640		288			0.10520043045107741
LTMLVGTLFTL	11	Unmodified	_LTMLVGTLFTL_					0	0	0			REV__ENST00000494760.1_1_2:9002596-9008596:-|nuORF	REV__ENST00000494760.1_1_2:9002596-9008596:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5718688964844	3	403.570154	1207.68863	0.54672	0.00022064	3.5932	0.0014501	4.1399	0.0016708	403.57158804731324	42.75	1.6081	42.517	42.155	43.763	-0.23262					120	42	4	0	0	0	0.96926	1	3867	3867		43.651	2.5707	1	5880100	+		49172	24283	34165	34218	54641	54641					0.09309542159189732
LTMNGSLTILY	11	Unmodified	_LTMNGSLTILY_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	613.2903442382812	2	613.328482	1224.64241	-1.3828	-0.00084812	3.4272	0.002102	2.0444	0.0012539	613.3307304465063	61.014	0.42739	60.808	60.581	61.008	-0.20599					18	10	2	0	0	0	0.024355	1	6821	6821		82.75	18.543	1	86192	+		49173	26672	34166	34219	54642	54642					0.03907477257098435
LTMPAPCNW	9	Carbamidomethyl (C)	_LTMPAPC(Carbamidomethyl (C))NW_	LTMPAPC(1)NW		LTMPAPC(49)NW		0	1	0			REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF	REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2457885742188	2	545.246437	1088.47832	-0.84784	-0.00046228	-0.33338	-0.00018177	-1.1812	-0.00064405	545.2461334101208	40.325	0.88313	40.175	39.933	40.816	-0.1497					65	23	4	0	0	0	0.6504	1	3499	3499		49.442	10.635	1	5365900	+		49174	29099	34167	34220	54643	54643	381				-0.062378187147032804
LTMQRVVSLY	10	Oxidation (M)	_LTM(Oxidation (M))QRVVSLY_		LTM(1)QRVVSLY		LTM(100)QRVVSLY	0	0	1		ENST00000592570.1_1_19:55915371-55915470:-|nuORF	ENST00000592570.1_1_19:55915371-55915470:-|nuORF	ENST00000592570.1_1_19:55915371-55915470:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.2904052734375	2	613.334098	1224.65364	-1.2909	-0.00079177	1.8748	0.0011499	0.58391	0.00035813	613.3351926166594	60.792	0.19186	60.616	60.483	60.674	-0.1761					7	4	2	0	0	0	0.03519	1	6772	6772		101.6	24.827	1	160700			49175	17374	34168	34221	54644	54644		552			0.05030299351210488
LTMQRVVSLY	10	Oxidation (M)	_LTM(Oxidation (M))QRVVSLY_		LTM(1)QRVVSLY		LTM(100)QRVVSLY	0	0	1		ENST00000592570.1_1_19:55915371-55915470:-|nuORF	ENST00000592570.1_1_19:55915371-55915470:-|nuORF	ENST00000592570.1_1_19:55915371-55915470:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	613.2899780273438	2	613.334098	1224.65364	-1.0511	-0.00064467	1.7771	0.0010899	0.72597	0.00044526	613.3349146690489	61.011	0.43012	60.758	60.623	61.053	-0.25373					20	10	3	0	0	0	0.03519	1	6780	6780		101.6	24.827	1	252830			49176	17374	34168	34221	54645	54645		552			0.05030299351210488
LTMSNNNPEL	10	Unmodified	_LTMSNNNPEL_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ANAPC7|p.L149Hfs*5|1|0.07|ENSG00000196510|chr12:110395165-110395166|-/T|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.7671508789062	2	566.768788	1131.52302	-0.16462	-9.3299E-05	-2.9819	-0.0016901	-3.1465	-0.0017834	566.7670086765057	41.112	1.0796	40.884	40.544	41.624	-0.2278					80	27	4	0	0	0	0.48123	1	3618	3618		90.37	5.4543	1	3447700			49177	9885	34169	34222	54646	54646					-0.03747716367638532
LTMSNNNPEL	10	Unmodified	_LTMSNNNPEL_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ANAPC7|p.L149Hfs*5|1|0.07|ENSG00000196510|chr12:110395165-110395166|-/T|frameshift_variant;ENST00000464697.1_1_12:110825679-110841468:-|nuORF	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.7667846679688	2	566.768788	1131.52302	-0.86834	-0.00049215	-2.2625	-0.0012823	-3.1308	-0.0017745	566.7674216944098	41.173	1.1729	40.943	40.624	41.797	-0.23029					81	30	4	0	0	0	0.34774	1	3612	3612		104.06	2.8042	1	3809500			49178	9885	34169	34222	54647	54647					-0.03747716367638532
LTMVNKTDV	9	Unmodified	_LTMVNKTDV_					0	0	0			REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	REV__ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.281982421875	2	510.773342	1019.53213	-0.15806	-8.0734E-05	-4.278	-0.0021851	-4.4361	-0.0022658	510.77110372011424	55.676	0.66217	55.52	55.26	55.922	-0.15602					27	17	3	0	0	0	0.024466	1	6197	6197		39.253	0	1	531680	+		49179	19138	34170	34223	54648	54648					0.023146769886920993
LTMYMDLVDG	10	2 Oxidation (M)	_LTM(Oxidation (M))YM(Oxidation (M))DLVDG_		LTM(1)YM(1)DLVDG		LTM(91)YM(91)DLVDG	0	0	2		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000554165.1_1_14:91850766-91884010:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	595.259521484375	2	595.259407	1188.50426	-1.1638	-0.00069278	1.1191	0.00066618	-0.044685	-2.6599E-05	595.2599160593256	76.395	0.95702	76.166	75.815	76.772	-0.22843					63	23	3	0	0	0	0.47726	1	9361	9361		90.777	11.326	1	2419200			49180	928	34171	34224	54649	54649		24;25			-0.08245014053704836
LTMYMDLVDG	10	2 Oxidation (M)	_LTM(Oxidation (M))YM(Oxidation (M))DLVDG_		LTM(1)YM(1)DLVDG		LTM(91)YM(91)DLVDG	0	0	2		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000554165.1_1_14:91850766-91884010:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	595.259521484375	2	595.259407	1188.50426	0.018876	1.1236E-05	-0.27828	-0.00016565	-0.25941	-0.00015442	595.2590905917706	76.159	0.91277	76.171	75.863	76.775	0.011642					71	22	4	0	0	0	0.47726	1	9313	9313		90.777	11.326	1	2307100			49181	928	34171	34224	54650	54650		24;25			-0.08245014053704836
LTMYMDLVDG	10	2 Oxidation (M)	_LTM(Oxidation (M))YM(Oxidation (M))DLVDG_		LTM(1)YM(1)DLVDG		LTM(88)YM(88)DLVDG	0	0	2		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000554165.1_1_14:91850766-91884010:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.2598876953125	2	595.259407	1188.50426	-0.52476	-0.00031237	0.34972	0.00020817	-0.17505	-0.0001042	595.2594963012809	76.528	1.3396	76.26	75.626	76.966	-0.26806					80	32	3	0	0	0	0.50466	2	9073	9073;9086		87.754	8.3033	1	4654000			49182	928	34171	34224	54651;54652	54651		24;25			-0.08245014053704836
LTNCCGFY	8	2 Carbamidomethyl (C)	_LTNC(Carbamidomethyl (C))C(Carbamidomethyl (C))GFY_	LTNC(1)C(1)GFY		LTNC(89)C(89)GFY		0	2	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7039184570312	2	517.707145	1033.39974	-0.18766	-9.7155E-05	-3.8792	-0.0020083	-4.0669	-0.0021054	517.7050494680686	34.341	1.1363	34.117	33.485	34.621	-0.22412					82	28	5	0	0	0	0.46709	2	2525	2516;2525		88.643	9.1918	1	3116900			49183	5170	34172	34225	54653;54654	54654	66;67				-0.11562671019760273
LTNCCGFY	8	2 Carbamidomethyl (C)	_LTNC(Carbamidomethyl (C))C(Carbamidomethyl (C))GFY_	LTNC(1)C(1)GFY		LTNC(110)C(110)GFY		0	2	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7047729492188	2	517.707145	1033.39974	-0.10935	-5.6612E-05	-3.8619	-0.0019994	-3.9713	-0.002056	517.705068407942	34.117	1.011	33.91	33.435	34.446	-0.20696					71	25	4	0	0	0	0.33369	1	2489	2489		106.42	24.175	1	3247900			49184	5170	34172	34225	54655	54655	66;67				-0.11562671019760273
LTNENAQYCP	10	Unmodified	_LTNENAQYCP_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8140869140625	2	576.753138	1151.49172	-0.19475	-0.00011232	-2.7855	-0.0016065	-2.9802	-0.0017189	576.7514010653947	47.475	0.58376	47.378	47.122	47.706	-0.096653					47	15	4	0	0	0	0.03519	1	4638	4638		34.173	0	1	1627600			49185	6977	34173	34226	54656	54656					-0.07796289401744616
LTNENAQYCP	10	Unmodified	_LTNENAQYCP_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8142700195312	2	576.753138	1151.49172	-0.19206	-0.00011077	-2.9452	-0.0016987	-3.1373	-0.0018094	576.7512881417097	47.6	0.58944	47.413	47.123	47.712	-0.18684					46	15	4	0	0	0	0.03519	1	4655	4655		49.442	0	1	1652100			49186	6977	34173	34226	54657	54657					-0.07796289401744616
LTNEREKLL	9	Unmodified	_LTNEREKLL_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.3230590820312	2	558.324588	1114.63462	-0.24155	-0.00013486	-0.053943	-3.0118E-05	-0.2955	-0.00016498	558.3245220458238	98.866	1.0033	98.698	98.24	99.243	-0.16862					43	22	3	0	0	0	0.96906	1	12256	12256		26.693	1.2427	1	265440			49187	8096	34174	34227	54658	54658					0.081890860518115
LTNESTNNNQ	10	Unmodified	_LTNESTNNNQ_					0	0	0			REV__ENST00000560849.2_2_15:50868060-50878706:-|nuORF	REV__ENST00000560849.2_2_15:50868060-50878706:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.755126953125	2	567.754724	1133.49489	-0.19857	-0.00011274	0.48909	0.00027768	0.29051	0.00016494	567.754675064575	60.934	0.71191	60.728	60.421	61.133	-0.20599					43	17	4	0	0	0	0.96822	1	6807	6807		49.536	1.6204	1	1074200	+		49188	35158	34175	34228	54659	54659					-0.06651323023379518
LTNIVVSPE	9	Unmodified	_LTNIVVSPE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2915344238281	2	486.274032	970.533512	0.60567	0.00029452	-0.60657	-0.00029496	-0.00090314	-4.3917E-07	486.27364476777956	59.675	0.57805	59.499	59.199	59.777	-0.1761					27	14	2	0	0	0	0.024523	1	6649	6649		21.96	12.254	1	342170	+		49189	27726	34176	34229	54660	54660					0.04706634349099659
LTNIYGSMLF	10	Unmodified	_LTNIYGSMLF_					0	0	0		ENSG00000147145|ENST00000614823|LPAR4	ENSG00000147145|ENST00000614823|LPAR4	ENSG00000147145|ENST00000614823|LPAR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.79541015625	2	579.796817	1157.57908	-1.4538	-0.0008429	-1.9281	-0.0011179	-3.3818	-0.0019608	579.7954349265062	62.445	0.49107	62.264	61.92	62.411	-0.18108					39	12	5	0	0	0	0.1333	1	7046	7046		129.42	5.3412	1	2961800			49190	5941	34177	34230	54661	54661					0.006595365398197828
LTNLAELLE	9	Unmodified	_LTNLAELLE_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2812805175781	2	508.28714	1014.55973	0.32538	0.00016539	-0.66548	-0.00033826	-0.3401	-0.00017287	508.2866998861482	84.354	0.97094	84.216	83.977	84.948	-0.13789					38	22	2	0	0	0	0.22379	1	10186	10186		85.862	9.0877	1	876910	+		49191	24423	34178	34231	54662	54662					0.05302903520578184
LTNLEAEKV	9	Unmodified	_LTNLEAEKV_					0	0	0			REV__ENST00000602520.5_1_4:119199941-119200585:+|nuORF	REV__ENST00000602520.5_1_4:119199941-119200585:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2931823730469	2	508.784764	1015.55498	0.17649	8.9794E-05	-0.59279	-0.0003016	-0.41631	-0.00021181	508.78451373662983	74.795	0.62042	74.536	74.244	74.864	-0.25887					42	14	4	0	0	0	0.024397	1	9101	9101		39.253	5.0803	1	337770	+		49192	35877	34179	34232	54663	54663					0.047820193778079556
LTNLLQQIK	9	Unmodified	_LTNLLQQIK_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.8157958984375	2	535.832049	1069.64954	-0.55037	-0.0002949	-0.31589	-0.00016926	-0.86626	-0.00046417	535.8318990596273	71.927	1.022	71.72	71.382	72.404	-0.20613					42	24	2	0	0	0	0.024367	1	8361	8361		62.107	10.915	1	460210	+		49193	20330	34180	34233	54664	54664					0.11750577919792704
LTNNKKLTYLN	11	Unmodified	_LTNNKKLTYLN_					0	0	0		ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	ENSG00000160505|ENST00000301295|NLRP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.26141357421875	3	441.253993	1320.74015	-0.032727	-1.4441E-05	3.5729	0.0015765	3.5401	0.0015621	441.2567021948398	19.812	0.18807	19.693	19.543	19.731	-0.11872					5	3	2	0	0	0	0.024809	1	440	440		8.4073	0	1	12285			49194	6819	34181	34234	54665	54665					0.0926100217743624
LTNQFMQKK	9	Unmodified	_LTNQFMQKK_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.3016357421875	2	569.307884	1136.60121	-0.36447	-0.0002075	-1.7314	-0.00098569	-2.0959	-0.0011932	569.8089940528562	99.246	0.35674	99.246	99.001	99.358	0					9	7	2	0	0	0	0.024447	1	12652	12652		32.812	8.2932	1	23549			49195	6953	34182	34235	54666	54666					0.038377610082534375
LTNREIKDL	9	Unmodified	_LTNREIKDL_					0	0	0			REV__LRRC2|p.N154Tfs*13|1|0.24|ENSG00000163827|chr3:46539074-46539074|T/-|frameshift_variant	REV__LRRC2|p.N154Tfs*13|1|0.24|ENSG00000163827|chr3:46539074-46539074|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.3113403320312	2	551.316763	1100.61897	-0.73115	-0.00040309	-1.9173	-0.001057	-2.6484	-0.0014601	551.3154777057587	33.445	0.87598	33.445	33.174	34.05	0					57	23	5	0	0	0	0.10464	1	2406	2406		109.48	10.896	1	5827000	+		49196	25643	34183	34236	54667	54667					0.07268799534745085
LTNSREIQL	9	Unmodified	_LTNSREIQL_					0	0	0		ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.3012084960938	2	537.301113	1072.58767	-0.74758	-0.00040167	1.0875	0.00058429	0.33988	0.00018262	537.3014783639504	56.627	0.95418	56.627	56.351	57.305	0					58	26	4	0	0	0	0.14181	1	6329	6329		101.25	8.0572	1	4015900			49197	9169	34184	34237	54668	54668					0.054282265006804664
LTNSRYTN	8	Unmodified	_LTNSRYTN_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7483825683594	2	484.743431	967.472308	-0.44615	-0.00021627	-2.8755	-0.0013939	-3.3217	-0.0016102	484.7419874233091	68.907	1.3659	68.922	68.388	69.754	0.015129					66	35	4	0	0	0	0.027866	1	8160	8160		35.618	2.8059	1	1114400	+		49198	26099	34185	34238	54669	54669					-0.012728776303447376
LTNSYYDD	8	Unmodified	_LTNSYYDD_					0	0	0			REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.7765808105469	2	495.70618	989.397806	-0.58225	-0.00028863	-2.0946	-0.0010383	-2.6768	-0.0013269	495.7051702849143	27.944	0.58909	27.699	27.332	27.921	-0.24524					24	13	2	0	0	0	0.027866	1	1601	1601		60.294	2.4827	1	142670	+		49199	20670	34186	34239	54670	54670					-0.0973168523238428
LTNVEPKI	8	Unmodified	_LTNVEPKI_					0	0	0			REV__nc|ENSG00000144445|A0AUZ9-4|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-4|KANSL1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.289794921875	2	457.271293	912.528032	-0.55293	-0.00025284	1.015	0.00046414	0.4621	0.00021131	457.2716111279345	85.768	1.3087	85.792	85.241	86.55	0.023666					62	30	3	0	0	0	0.027866	1	10724	10724		98.629	0	1	382660	+		49200	24335	34187	34240	54671	54671					0.06826955557278325
LTNVFVDCNEG	11	Unmodified	_LTNVFVDCNEG_					0	0	0			REV__PIGR|p.V282F|1|0.29|ENSG00000162896|chr1:206937296-206937296|C/A|missense_variant	REV__PIGR|p.V282F|1|0.29|ENSG00000162896|chr1:206937296-206937296|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.77001953125	2	605.774071	1209.53359	-0.13178	-7.9826E-05	-1.93	-0.0011692	-2.0618	-0.001249	605.7726182526892	58.16	0.68563	57.927	57.664	58.349	-0.23363					37	16	3	0	0	0	0.94699	1	6362	6362		48.602	7.1749	1	2499500	+		49201	37375	34188	34241	54672	54672					-0.06279733713222413
LTNVSVIYELE	11	Unmodified	_LTNVSVIYELE_					0	0	0			REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.3450927734375	2	640.342643	1278.67073	1.0477	0.00067089	3.3152	0.0021229	4.3629	0.0027938	640.344804406662	105.27	0.62677	105.27	105.06	105.69	0					28	15	3	0	0	0	0.98542	1	13504	13504		40.058	3.6114	1	332270	+		49202	19357	34189	34242	54673	54673					0.04254498438012888
LTNVSVIYELE	11	Unmodified	_LTNVSVIYELE_					0	0	0			REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.342041015625	2	640.342643	1278.67073	1.0202	0.0006533	3.1642	0.0020262	4.1844	0.0026795	640.3451500409111	105.2	0.5163	105.2	105.02	105.54	0.00096893					27	16	3	0	0	0	0.98542	1	13479	13479		40.058	3.6114	1	364930	+		49203	19357	34189	34242	54674	54674					0.04254498438012888
LTPAWRRSG	9	Unmodified	_LTPAWRRSG_					0	0	0			REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7689208984375	2	522.290882	1042.56721	-0.59413	-0.00031031	-0.067523	-3.5266E-05	-0.66165	-0.00034557	522.2908282832846	56.271	1.0261	56.115	55.48	56.506	-0.15601					70	27	4	0	0	0	0.024405	1	6140	6140		53.351	14.545	1	1568900	+		49204	30082	34190	34243	54675	54675					0.047631006314986735
LTPAWRRSG	9	Unmodified	_LTPAWRRSG_					0	0	0			REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.290882	1042.56721	-0.67289	-0.00035144	0.075698	3.9536E-05	-0.59719	-0.00031191	522.2905882450692	56.282	0.55662	56.125	55.856	56.413	-0.15655	0.0085339	0.00011224	NaN	53.351	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346820	+		49205	30082	34190	34243							0.047631006314986735
LTPAWRRSG	9	Unmodified	_LTPAWRRSG_					0	0	0			REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.290882	1042.56721	0.36674	0.00019155	-0.95814	-0.00050043	-0.59139	-0.00030888	522.2901633886952	56.352	0.50901	56.136	55.881	56.39	-0.21607	0.019115	-0.00096768	NaN	53.351	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293860	+		49206	30082	34190	34243							0.047631006314986735
LTPAWRRSG	9	Unmodified	_LTPAWRRSG_					0	0	0			REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	REV__ENST00000302754.5_1_19:12903662-12904103:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.290882	1042.56721	-0.2819	-0.00014723	-0.64267	-0.00033566	-0.92457	-0.0004829	522.2905050146983	56.341	0.58401	56.119	55.845	56.429	-0.22183	0.0019979	-0.00063816	NaN	53.351	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264050	+		49207	30082	34190	34243							0.047631006314986735
LTPCCQYY	8	Unmodified	_LTPCCQYY_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|43|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|43|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|43|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.77667236328125	2	495.706614	989.398675	-0.30596	-0.00015167	-4.1402	-0.0020523	-4.4462	-0.002204	495.7046070846082	27.848	0.49623	27.696	27.312	27.808	-0.15195					18	11	2	0	0	0	0.027866	1	1545	1545		68.485	18.46	1	74814			49208	17866	34191	34244	54676	54676					-0.09644885388684088
LTPCSLSVLI	10	Unmodified	_LTPCSLSVLI_					0	0	0			REV__ENST00000490414.1_1_1:161188769-161188988:+|nuORF	REV__ENST00000490414.1_1_1:161188769-161188988:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3038940429688	2	523.301736	1044.58892	0.15341	8.0282E-05	3.71	0.0019415	3.8635	0.0020218	523.3035843070627	90.16	1.1956	90.173	89.798	90.993	0.013443					81	28	4	0	0	0	0.62431	1	11335	11335		74.255	7.8258	1	1080600	+		49209	33700	34192	34245	54677	54677					0.06840724545213561
LTPDEGLPF	9	Unmodified	_LTPDEGLPF_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.781982421875	2	494.752933	987.491313	0.83694	0.00041408	2.4857	0.0012298	3.3226	0.0016439	494.7543925572209	66.077	0.26773	66.077	65.837	66.105	0					9	6	2	0	0	0	0.024436	1	7857	7857		23.042	6.5693	1	106090			49210	4333	34193	34246	54678	54678					-0.0029334105928455756
LTPDKNII	8	Unmodified	_LTPDKNII_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2897033691406	2	457.271293	912.528032	-0.048885	-2.2354E-05	0.6477	0.00029617	0.59882	0.00027382	457.2714889383114	85.828	0.62795	85.771	85.522	86.15	-0.057617					32	14	3	0	0	0	0.027866	1	10763	10763		129.68	0	1	326320	+		49211	22840	34194	34247	54679	54679					0.06826955557278325
LTPDNMVGTVY	11	Oxidation (M)	_LTPDNM(Oxidation (M))VGTVY_		LTPDNM(1)VGTVY		LTPDNM(91)VGTVY	0	0	1		ENST00000574412.5_2_17:4637736-4637835:-|nuORF	ENST00000574412.5_2_17:4637736-4637835:-|nuORF	ENST00000574412.5_2_17:4637736-4637835:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2904052734375	2	613.292096	1224.56964	-1.3678	-0.00083883	-1.8261	-0.0011199	-3.1938	-0.0019588	613.2910663344024	60.993	2.0779	60.787	60.213	62.291	-0.20599					148	51	4	0	0	0	0.28368	1	6797	6797		90.601	7.8504	1	52007000			49212	17085	34195	34248	54680	54680		547			-0.03366276536348778
LTPDTGRILSK	11	Unmodified	_LTPDTGRILSK_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.9032897949219	3	400.903072	1199.68739	1.5561	0.00062385	-1.4867	-0.00059604	0.069379	2.7814E-05	400.9024379931997	51.16	1.0265	51.16	50.81	51.836	0					86	28	5	0	0	0	0.37749	1	5393	5393		84.31	12.215	1	7646200			49213	6741;15202	34196	34249	54681	54681					0.0955304411461384
LTPFFQTII	9	Unmodified	_LTPFFQTII_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.30908203125	2	540.310418	1078.60628	-0.30433	-0.00016444	-3.6964	-0.0019972	-4.0007	-0.0021616	540.3083912995808	72.712	1.2141	72.447	72.042	73.256	-0.26479					101	28	5	0	0	0	0.14024	1	8525	8525		101.6	5.7855	1	9780500	+		49214	23737	34197	34250	54682	54682					0.07012388142538839
LTPFVAFHFD	10	Unmodified	_LTPFVAFHFD_					0	0	0		ENST00000470721.5_1_1:167992270-167992423:+|nuORF	ENST00000470721.5_1_1:167992270-167992423:+|nuORF	ENST00000470721.5_1_1:167992270-167992423:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	598.26025390625	2	597.303124	1192.5917	-0.96084	-0.00057391	1.7611	0.0010519	0.80022	0.00047797	597.304342692861	64.933	0.20094	64.698	64.607	64.808	-0.2345					5	4	2	0	0	0	0.03519	1	7385	7385		40.778	19.941	1	46354			49215	14937	34198	34251	54683	54683					0.0031031599437483237
LTPGAYWSY	9	Unmodified	_LTPGAYWSY_					0	0	0			REV__ENSG00000213892|ENST00000587331|CEACAM16	REV__ENSG00000213892|ENST00000587331|CEACAM16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.8005981445312	2	529.2531	1056.49165	-0.20595	-0.000109	-0.72273	-0.00038251	-0.92869	-0.00049151	529.2525896191336	38.664	2.8603	38.439	37.417	40.277	-0.2257					149	77	3	0	0	0	0.024457	1	3198	3198		45.952	13.997	1	1617900	+		49216	28754	34199	34252	54684	54684					-0.034339213394332546
LTPGGLAEQP	10	Unmodified	_LTPGGLAEQP_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7921447753906	2	491.763832	981.513111	-0.12328	-6.0624E-05	1.2994	0.00063901	1.1761	0.00057839	491.7640394068608	61.313	0.51644	61.087	60.781	61.298	-0.22663					21	13	2	0	0	0	0.03519	1	7032	7032		47.657	13.485	1	291420			49217	1992	34200	34253	54685	54685					0.02161463689287757
LTPGQVKAEL	10	Unmodified	_LTPGQVKAEL_					0	0	0		ENST00000524944.5_1_11:65305869-65306034:+|nuORF	ENST00000524944.5_1_11:65305869-65306034:+|nuORF	ENST00000524944.5_1_11:65305869-65306034:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2804565429688	2	528.308406	1054.60226	-0.96261	-0.00050855	0.85846	0.00045353	-0.10415	-5.5023E-05	528.3087664985673	69.226	0.7052	68.965	68.547	69.252	-0.26165					25	16	2	0	0	0	0.03519	1	8025	8025		54.776	0	1	325240			49218	16074	34201	34254	54686	54686					0.07714298648784279
LTPHFTVF	8	Unmodified	_LTPHFTVF_					0	0	0			REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.24615478515625	2	481.260728	960.506903	-0.62803	-0.00030224	-3.7367	-0.0017983	-4.3647	-0.0021006	481.25901351709206	39.258	0.70938	39.16	38.702	39.411	-0.098755					32	19	2	0	0	0	0.027866	1	3280	3280		12.207	3.3845	1	528400	+		49219	30118	34202	34255	54687	54687					0.025069902484233353
LTPHFTVF	8	Unmodified	_LTPHFTVF_					0	0	0			REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.24615478515625	2	481.260728	960.506903	-0.51491	-0.0002478	-2.1736	-0.0010461	-2.6885	-0.0012939	481.25943279327936	38.362	0.77662	38.28	38.083	38.86	-0.082516					37	20	2	0	0	0	0.027866	1	3280	3280		12.207	3.3845	1	542580	+		49220	30118	34202	34255	54688	54688					0.025069902484233353
LTPHFTVF	8	Unmodified	_LTPHFTVF_					0	0	0			REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.260728	960.506903	0.30322	0.00014593	-4.4588	-0.0021458	-4.1556	-0.0019999	481.2585215350097	39.26	0.52448	39.26	38.97	39.495	0	-0.048636	-0.00065264	NaN	18.324	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459650	+		49221	30118	34202	34255							0.025069902484233353
LTPHFTVF	8	Unmodified	_LTPHFTVF_					0	0	0			REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	REV__ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.260728	960.506903	-0.93635	-0.00045063	-2.9011	-0.0013962	-3.8375	-0.0018468	481.2592855831573	39.483	0.57109	39.507	39.135	39.706	0.023727	0.19808	0.00084667	NaN	18.324	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541960	+		49222	30118	34202	34255							0.025069902484233353
LTPHLERQ	8	Unmodified	_LTPHLERQ_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2824401855469	2	497.277441	992.540328	0.23109	0.00011492	-0.27085	-0.00013469	-0.039756	-1.977E-05	497.2773282560302	22.063	0.51856	21.874	21.628	22.147	-0.18894					35	10	6	0	0	0	0.97794	1	757	757		40.778	5.5774	1	435120	+		49223	28172	34203	34256	54689	54689					0.04375992020322883
LTPKQDFY	8	Unmodified	_LTPKQDFY_					0	0	0		ENSG00000171827|ENST00000330173|ZNF570;ZNF570|p.E105Q|1|0.2|ENSG00000171827|chr19:37483935-37483935|G/C|missense_variant	ENSG00000171827|ENST00000330173|ZNF570	ENSG00000171827|ENST00000330173|ZNF570	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3236999511719	2	506.260925	1010.5073	-0.43181	-0.00021861	1.6234	0.00082184	1.1915	0.00060323	506.26140002244114	79.056	0.5018	79.056	78.7	79.201	0					18	11	2	0	0	0	0.027866	1	9765	9765		31.955	3.7006	1	147450			49224	8201	34204	34257	54690	54690					0.0024636517761109644
LTPLEPRPL	9	Unmodified	_LTPLEPRPL_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|197|1|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|197|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7822265625	2	518.313492	1034.61243	-0.89852	-0.00046571	-0.31576	-0.00016367	-1.2143	-0.00062938	518.3129603554167	79.362	0.79111	79.189	78.819	79.61	-0.17226					41	18	3	0	0	0	0.024418	1	9783	9783		37.812	0	1	250160	+		49225	36225	34205	34258	54691	54691					0.09650906374031365
LTPLPSLFL	9	Unmodified	_LTPLPSLFL_					0	0	0			REV__ENST00000398576.6_1_13:46701143-46701437:-|nuORF	REV__ENST00000398576.6_1_13:46701143-46701437:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.8069152832031	2	500.807511	999.600469	-1.3079	-0.00065499	1.6446	0.00082362	0.33672	0.00016863	500.8079761337237	107.13	0.42548	107	106.83	107.25	-0.1346					28	15	3	0	0	0	0.80658	1	13293	13293		38.806	1.647	1	191510	+		49226	31803	34206	34259	54692	54692					0.10065289630847474
LTPLPTTGPR	10	Unmodified	_LTPLPTTGPR_					0	0	0			REV__ENST00000571138.5_1_17:5014814-5017504:+|nuORF	REV__ENST00000571138.5_1_17:5014814-5017504:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8087768554688	2	526.808574	1051.60259	-0.89777	-0.00047295	0.34413	0.00018129	-0.55364	-0.00029166	526.8087775806663	57.285	0.69974	57.285	56.904	57.603	0					32	18	2	0	0	0	0.77808	1	6460	6460		62.107	2.1766	1	6675100	+		49227	35400	34207	34260	54693	54693					0.07885718368652306
LTPLQPSL	8	Unmodified	_LTPLQPSL_					0	0	0		nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.2523498535156	2	434.760561	867.506569	0.64319	0.00027963	-0.8582	-0.00037311	-0.21502	-9.348E-05	434.76028707927486	78.542	0.5365	78.35	78.096	78.633	-0.1921					17	12	2	0	0	0	0.027866	1	9655	9655		37.812	0	1	154630			49228	865	34208	34261	54694	54694					0.06751570528570028
LTPNIILLN	9	Unmodified	_LTPNIILLN_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2587890625	2	505.815867	1009.61718	0.047353	2.3952E-05	0.2013	0.00010182	0.24866	0.00012577	506.3177706396298	41.538	0.59618	41.561	41.147	41.743	0.023003					19	16	2	0	0	0	0.024539	1	3625	3625		27.882	0	1	116690			49229	8745	34209	34262	54695	54695					0.11275790516810957
LTPNIILLN	9	Unmodified	_LTPNIILLN_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.815867	1009.61718	-0.041659	-2.1072E-05	1.4983	0.00075784	1.4566	0.00073677	506.3187377719006	41.273	0.38861	41.273	41.153	41.542	0	-0.15147	0.00043631	NaN	20.947	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120630			49230	8745	34209	34262							0.11275790516810957
LTPNIILLN	9	Unmodified	_LTPNIILLN_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.815867	1009.61718	-0.20402	-0.0001032	1.4343	0.00072547	1.2302	0.00062227	506.3187319290656	41.563	0.38924	41.44	41.26	41.65	-0.12317	0.014897	0.00037156	NaN	20.947	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228740			49231	8745	34209	34262							0.11275790516810957
LTPPPALL	8	Unmodified	_LTPPPALL_					0	0	0		ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.7399597167969	2	411.260197	820.50584	-0.67801	-0.00027884	4.171	0.0017154	3.493	0.0014365	411.26184029030287	43.306	0.50554	43.08	42.873	43.379	-0.22597					32	13	3	0	0	0	0.027866	1	3925	3925		20.482	5.8177	1	720910			49232	14829	34210	34263	54696	54696					0.0884077587951424
LTPPPALL	8	Unmodified	_LTPPPALL_					0	0	0		ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	411.260197	820.50584	0.47076	0.00019361	3.4836	0.0014327	3.9544	0.0016263	411.26151314694863	43.067	0.54432	43.067	42.859	43.404	0	-0.0050236	3.2944E-05	NaN	20.482	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	721350			49233	14829	34210	34263							0.0884077587951424
LTPPPALL	8	Unmodified	_LTPPPALL_					0	0	0		ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	411.260197	820.50584	0.11517	4.7363E-05	3.7234	0.0015313	3.8385	0.0015786	411.26164543770784	43.207	0.79599	43.067	42.885	43.681	-0.13929	-0.0042101	0.00023014	NaN	20.482	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712780			49234	14829	34210	34263							0.0884077587951424
LTPPPALL	8	Unmodified	_LTPPPALL_					0	0	0		ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	411.260197	820.50584	1.0225	0.00042052	2.8175	0.0011587	3.84	0.0015792	411.2612395459456	43.153	0.65434	43.184	42.939	43.593	0.030827	0.11231	-0.00051497	NaN	20.482	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	820910			49235	14829	34210	34263							0.0884077587951424
LTPPPALL	8	Unmodified	_LTPPPALL_					0	0	0		ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	411.260197	820.50584	0.025722	1.0578E-05	3.5108	0.0014439	3.5365	0.0014544	411.2615176379722	43.091	0.43743	42.979	42.815	43.253	-0.11253	-0.092858	5.5302E-05	NaN	20.482	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598070			49236	14829	34210	34263							0.0884077587951424
LTPPPALL	8	Unmodified	_LTPPPALL_					0	0	0		ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	ENST00000467160.1_1_19:19757012-19757291:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	411.260197	820.50584	-0.30571	-0.00012572	2.5033	0.0010295	2.1975	0.00090376	411.26090057592955	43.291	0.99702	43.053	42.839	43.836	-0.23736	-0.018291	-0.00077343	NaN	20.482	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522130			49237	14829	34210	34263							0.0884077587951424
LTPPPLLL	8	Unmodified	_LTPPPLLL_					0	0	0			REV__ENSG00000050344|ENST00000056233|NFE2L3;REV__ENSG00000187994|ENST00000591812|RINL	REV__ENSG00000050344|ENST00000056233|NFE2L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.2530517578125	2	432.283672	862.552791	-0.058402	-2.5246E-05	-3.3706	-0.001457	-3.429	-0.0014823	432.2817640515265	31.433	0.22844	31.248	31.172	31.4	-0.18503					6	5	2	0	0	0	0.027866	1	2098	2098		8.8223	4.5061	1	17567	+		49238	20157;27998	34211	34264	54697	54697					0.11601635430656643
LTPPPNYE	8	Unmodified	_LTPPPNYE_					0	0	0		ENST00000323146.7_1_5:139944068-139944227:+|nuORF	ENST00000323146.7_1_5:139944068-139944227:+|nuORF	ENST00000323146.7_1_5:139944068-139944227:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.730224609375	2	465.732	929.449448	0.91856	0.0004278	-3.054	-0.0014224	-2.1355	-0.00099455	465.7305747455732	110.17	0.36309	110.17	109.99	110.35	0					14	9	2	0	0	0	1.0574	1	14019	14019		26.796	3.7536	1	103720			49239	12234	34212	34265	54698	54698					-0.018098967478181294
LTPPPRGPN	9	Unmodified	_LTPPPRGPN_					0	0	0			REV__ENSG00000171105|ENST00000302850|INSR	REV__ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.8150939941406	2	474.766709	947.518865	0.060016	2.8493E-05	2.2808	0.0010828	2.3408	0.0011113	474.7676203128647	24.656	0.67495	24.441	24.089	24.764	-0.2151					24	15	2	0	0	0	0.024457	1	1129	1129		29.15	0	1	230330	+		49240	26543	34213	34266	54699	54699					0.04300606991614586
LTPRPPLCP	9	Unmodified	_LTPRPPLCP_					0	0	0		ENST00000479453.1_1_2:26802129-26802303:+|nuORF	ENST00000479453.1_1_2:26802129-26802303:+|nuORF	ENST00000479453.1_1_2:26802129-26802303:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.28302001953125	2	497.281137	992.547722	0.2606	0.00012959	2.6488	0.0013172	2.9095	0.0014468	497.2826736619178	81.902	1.2486	81.673	81.395	82.644	-0.2289					48	28	3	0	0	0	0.35646	1	9855	9855		68.787	0	1	1212900			49241	15173	34214	34267	54700	54700					0.051150082963886234
LTPRQTAL	8	Unmodified	_LTPRQTAL_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2684631347656	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.94517	1	3133	3133		45.952	0	1	136700000			49242	18072	34215	34268	54701	54701					0.07029491134358068
LTPRQTAL	8	Unmodified	_LTPRQTAL_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.26885986328125	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.71833	1	3148	3148		65.803	2.4969	1	125590000			49243	18072	34215	34268	54702	54702					0.07029491134358068
LTPSELLFDLY	11	Unmodified	_LTPSELLFDLY_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.23577880859375	3	437.567466	1309.68057	1.0753	0.00047052	-3.1826	-0.0013926	-2.1073	-0.0009221	437.56594410646085	58.806	0.51789	58.564	58.258	58.776	-0.24165					23	12	2	0	0	0	0.024723	1	6445	6445		28.577	6.7963	1	505320			49244	5448	34216	34269	54703	54703					0.03811686443418694
LTPSLPPAR	9	Unmodified	_LTPSLPPAR_					0	0	0			REV__ENST00000595087.5_1_19:15508861-15509095:-|nuORF	REV__ENST00000595087.5_1_19:15508861-15509095:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7878112792969	2	476.284734	950.554916	0.44538	0.00021213	-0.97225	-0.00046307	-0.52687	-0.00025094	476.2841811260068	59.29	0.51839	59.376	59.099	59.618	0.085686					30	13	3	0	0	0	0.024405	1	6714	6714		35.618	0.41757	1	1033400	+		49245	35780	34217	34270	54704	54704					0.07766064168458797
LTPSLPPAR	9	Unmodified	_LTPSLPPAR_					0	0	0			REV__ENST00000595087.5_1_19:15508861-15509095:-|nuORF	REV__ENST00000595087.5_1_19:15508861-15509095:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7878112792969	2	476.284734	950.554916	-0.26049	-0.00012407	0.47962	0.00022843	0.21913	0.00010437	476.28479342239916	59.753	0.6315	59.839	59.54	60.171	0.085682					44	16	4	0	0	0	0.024405	1	6714	6714		35.618	0.41757	1	907930	+		49246	35780	34217	34270	54705	54705					0.07766064168458797
LTPSTVVMGV	10	Unmodified	_LTPSTVVMGV_					0	0	0			REV__ENST00000486187.5_1_10:43078317-43078551:-|nuORF	REV__ENST00000486187.5_1_10:43078317-43078551:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.8139953613281	2	502.27826	1002.54197	0.53052	0.00026647	-2.0813	-0.0010454	-1.5508	-0.00077892	502.2763315443945	96.378	0.89641	96.242	95.894	96.791	-0.1367					36	20	3	0	0	0	0.03519	1	11913	11913		27.882	0	1	572430	+		49247	33579	34218	34271	54706	54706					0.04079864994082527
LTPSVLPRP	9	Unmodified	_LTPSVLPRP_					0	0	0		ENST00000478158.5_1_16:30371114-30377040:-|nuORF	ENST00000478158.5_1_16:30371114-30377040:-|nuORF	ENST00000478158.5_1_16:30371114-30377040:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.27130126953125	2	490.300384	978.586216	-0.5999	-0.00029413	1.8641	0.00091397	1.2642	0.00061983	490.3002892838921	63.076	0.74804	62.837	62.492	63.24	-0.23926					53	18	4	0	0	0	0.024397	1	7374	7374		31.53	4.8369	1	2597100			49248	15132	34219	34272	54707	54707					0.0960663720256889
LTPSWWPS	8	Unmodified	_LTPSWWPS_					0	0	0			REV__ENST00000462675.1_1_3:75496401-75505839:-|nuORF	REV__ENST00000462675.1_1_3:75496401-75505839:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.25872802734375	2	487.242535	972.470518	-0.5943	-0.00028957	1.4234	0.00069353	0.82908	0.00040396	487.24346252752895	51.467	0.42393	51.319	51.12	51.544	-0.14735					13	11	2	0	0	0	0.027866	1	5417	5417		38.806	0	1	99381	+		49249	32908	34220	34273	54708	54708					-0.016818866482935846
LTPTLDPTHR	10	Unmodified	_LTPTLDPTHR_					0	0	0		nc|ENSG00000243477|Q93015-2|NAA80	nc|ENSG00000243477|Q93015-2|NAA80	nc|ENSG00000243477|Q93015-2|NAA80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8141479492188	2	575.814387	1149.61422	-0.54648	-0.00031467	-0.062619	-3.6057E-05	-0.6091	-0.00035073	575.8143293593397	47.823	0.77308	47.547	47.231	48.004	-0.27598					66	20	4	0	0	0	1.0122	1	4678	4678		44.377	0.26039	1	8177800			49250	18761	34221	34274	54709	54709					0.04539915391978866
LTPTPIQP	8	Unmodified	_LTPTPIQP_					0	0	0			REV__nc|ENSG00000167257|Q8ND24-2|RNF214	REV__nc|ENSG00000167257|Q8ND24-2|RNF214	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.75189208984375	2	433.752736	865.490919	0.50306	0.0002182	-3.3096	-0.0014355	-2.8065	-0.0012173	433.7512119293158	19.727	1.5901	19.727	18.972	20.562	0					82	32	4	0	0	0	0.91956	1	439	439		49.442	5.3247	1	1278400	+		49251	26121	34222	34275	54710	54710					0.052792840115330364
LTPTQGPSH	9	Unmodified	_LTPTQGPSH_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-2|CEP170	REV__nc|ENSG00000143702|Q5SW79-2|CEP170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7744445800781	2	469.240524	936.466495	-0.74812	-0.00035105	0.47086	0.00022094	-0.27727	-0.00013011	469.2404863402666	43.831	0.50819	43.831	43.548	44.056	0					31	13	3	0	0	0	0.024205	1	4139	4139		53.351	22.848	1	780290	+		49252	24275	34223	34276	54711	54711					-0.004279761419979877
LTPTQPSET	9	Unmodified	_LTPTQPSET_					0	0	0		ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000520964.1_1_X:134185341-134186186:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.79638671875	2	487.245472	972.476391	1.0284	0.00050109	-2.1859	-0.0010651	-1.1575	-0.00056398	487.2438945669669	59.449	0.52175	59.449	59.257	59.779	0					19	13	2	0	0	0	0.024374	1	6790	6790		25.574	0	1	148820			49253	15995	34224	34277	54712	54712					-0.010948329272878254
LTPVIESSLH	10	Unmodified	_LTPVIESSLH_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000468077.5_1_1:234541177-234541731:-|nuORF;ENST00000483404.5_1_1:234536679-234541836:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7725830078125	2	548.305864	1094.59717	-0.57258	-0.00031395	-0.26638	-0.00014606	-0.83897	-0.00046001	548.305619867307	35.525	0.39575	35.309	35.1	35.496	-0.21555					11	7	2	0	0	0	0.03519	1	2723	2723		26.693	0	1	72195			49254	1224	34225	34278	54713	54713					0.05365994786188821
LTPVPHHNPL	10	Unmodified	_LTPVPHHNPL_					0	0	0			REV__ENST00000420027.3_1_20:48698697-48698769:-|nuORF	REV__ENST00000420027.3_1_20:48698697-48698769:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2963256835938	2	562.81419	1123.61383	0.29637	0.0001668	2.9989	0.0016878	3.2953	0.0018546	562.8156841040767	21.503	0.71632	21.326	21.065	21.781	-0.17721					27	14	3	0	0	0	0.03519	1	686	686		31.53	17.393	1	62839	+		49255	32154	34226	34279	54714	54714					0.056965404627817406
LTPVPLPEN	9	Unmodified	_LTPVPLPEN_					0	0	0			REV__nc|ENSG00000169297|P51843-2|NR0B1	REV__nc|ENSG00000169297|P51843-2|NR0B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.3003234863281	2	490.276575	978.538597	-0.23692	-0.00011616	1.9894	0.00097537	1.7525	0.00085921	490.27759173271426	66.805	0.42244	66.805	66.588	67.01	0					16	9	2	0	0	0	0.024319	1	7939	7939		39.253	8.7492	1	177620	+		49256	26349	34227	34280	54715	54715					0.04846938211710494
LTPWPSLIL	9	Unmodified	_LTPWPSLIL_					0	0	0		nc|ENSG00000175746|Q8N8G6|LINC02915	nc|ENSG00000175746|Q8N8G6|LINC02915	nc|ENSG00000175746|Q8N8G6|LINC02915	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8207397460938	2	520.312961	1038.61137	-0.51374	-0.0002673	0.50067	0.00026051	-0.013064	-6.7973E-06	520.3129371780714	82.433	1.2922	82.292	81.659	82.951	-0.14014					40	29	3	0	0	0	0.024436	1	9832	9832		38.806	0	1	388980			49257	18533	34228	34281	54716	54716					0.09360692005134297
LTPYLPAVPS	10	Unmodified	_LTPYLPAVPS_					0	0	0		nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	nc|ENSG00000168060|Q9UQQ1-5|NAALADL1	nc|ENSG00000168060|Q9UQQ1-5|NAALADL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2972412109375	2	529.30005	1056.58555	0.0093011	4.9231E-06	-4.4033	-0.0023307	-4.394	-0.0023257	529.2974144850223	106.51	0.8959	106.51	106.1	106.99	0.0018387					60	31	4	0	0	0	1.1307	1	13593	13593		26.693	3.1702	1	974930			49258	7778	34229	34282	54717	54717					0.059517977628502194
LTQAWCISW	9	Unmodified	_LTQAWCISW_					0	0	0		ENST00000392004.7_1_2:238287338-238287452:-|nuORF	ENST00000392004.7_1_2:238287338-238287452:-|nuORF	ENST00000392004.7_1_2:238287338-238287452:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.83056640625	2	554.268227	1106.5219	-1.0009	-0.00055475	-0.81608	-0.00045233	-1.817	-0.0010071	554.2681128331184	48.762	0.44543	48.661	48.434	48.88	-0.1008					14	11	2	0	0	0	0.024477	1	4837	4837		27.882	6.9353	1	103320			49259	13403	34230	34283	54718	54718					-0.027098859459101732
LTQDKPEP	8	Unmodified	_LTQDKPEP_					0	0	0			REV__PSMD1-ATP2C1|1|fusion	REV__PSMD1-ATP2C1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2304382324219	2	464.242732	926.470912	0.70188	0.00032584	-1.2112	-0.00056231	-0.50936	-0.00023646	464.24238126939724	37.326	0.3362	37.359	37.226	37.563	0.032269					11	8	2	0	0	0	0.027866	1	3001	3001		29.15	0	1	99215	+		49260	37415	34231	34284	54719	54719					0.0047348828089752715
LTQDRPLVL	9	Unmodified	_LTQDRPLVL_					0	0	0		ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	ENSG00000167543|ENST00000301057|TP53I13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2916870117188	2	527.816399	1053.61824	-0.41029	-0.00021656	-1.3288	-0.00070137	-1.7391	-0.00091793	527.8156991757252	54.898	0.85658	54.748	54.409	55.266	-0.15036					55	24	4	0	0	0	0.024288	1	5990	5990		52.937	11.51	1	5892700			49261	7697	34232	34285	54720	54720					0.09358004885712035
LTQDTLWCFSQ	11	Unmodified	_LTQDTLWCFSQ_					0	0	0		ENST00000509721.1_1_5:146257648-146464194:-|nuORF;nc|ENSG00000156475|Q00005-3|PPP2R2B	ENST00000509721.1_1_5:146257648-146464194:-|nuORF	ENST00000509721.1_1_5:146257648-146464194:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.8776550292969	3	447.876306	1340.60709	-0.20776	-9.3051E-05	2.074	0.00092891	1.8663	0.00083586	447.8774404372459	64.523	1.6005	64.32	63.706	65.307	-0.20254					109	39	5	0	0	0	0.96993	2	7325	7325;7363		43.501	0.082776	1	10802000			49262	15808	34233	34286	54721;54722	54721					-0.04959185270740818
LTQEAGILRS	10	Unmodified	_LTQEAGILRS_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.30078125	2	544.308938	1086.60332	-0.70451	-0.00038347	4.3182	0.0023504	3.6137	0.0019669	544.3112413217099	50.675	0.43372	50.526	50.289	50.723	-0.14916					17	12	2	0	0	0	0.03519	1	5265	5265		45.972	0	1	183090			49263	11087	34234	34287	54723	54723					0.06348513017701407
LTQFLQKK	8	Unmodified	_LTQFLQKK_					0	0	0		MAGEB6|p.A203T|1|0.47|ENSG00000176746|chrX:26194453-26194453|G/A|missense_variant	MAGEB6|p.A203T|1|0.47|ENSG00000176746|chrX:26194453-26194453|G/A|missense_variant	MAGEB6|p.A203T|1|0.47|ENSG00000176746|chrX:26194453-26194453|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.3088684082031	2	503.30821	1004.60187	-0.85002	-0.00042782	1.0344	0.00052063	0.1844	9.2808E-05	503.30851835106165	42.913	1.2732	42.687	42.105	43.379	-0.22597					91	33	4	0	0	0	0.71833	1	3877	3877		65.803	0	1	4051800			49264	17942	34235	34288	54724	54724					0.09974923719619255
LTQGAAHCLP	10	Unmodified	_LTQGAAHCLP_					0	0	0			REV__ENSG00000171956|ENST00000396057|FOXB1	REV__ENSG00000171956|ENST00000396057|FOXB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.7556457519531	2	505.758027	1009.5015	-0.23813	-0.00012044	-0.75636	-0.00038253	-0.99449	-0.00050297	505.75737874073053	100.79	2.0911	100.8	100.58	102.67	0.0090256					62	48	2	0	0	0	1.1088	1	12871	12871		31.53	4.8369	1	231580	+		49265	26619	34236	34289	54725	54725					-0.0028705660571404223
LTQKHAATW	9	Unmodified	_LTQKHAATW_					0	0	0			REV__ENST00000275767.3_1_7:134850415-134850709:+|nuORF	REV__ENST00000275767.3_1_7:134850415-134850709:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.8218994140625	2	528.285266	1054.55598	-0.014641	-7.7344E-06	2.2597	0.0011938	2.2451	0.001186	528.2864790659089	32.384	2.7684	32.447	32.045	34.813	0.062885					109	71	2	0	0	0	0.024506	1	2233	2233		23.042	0	1	881610	+		49266	29849	34237	34290	54726	54726					0.030882785373478328
LTQLFRDGG	9	Unmodified	_LTQLFRDGG_					0	0	0			REV__ENST00000584767.5_1_17:73029014-73029146:+|nuORF	REV__ENST00000584767.5_1_17:73029014-73029146:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.6990966796875	2	503.769448	1005.52434	-0.65044	-0.00032767	-0.10821	-5.4511E-05	-0.75865	-0.00038218	503.77038058452627	26.668	0.32194	26.432	26.341	26.663	-0.23603					9	7	2	0	0	0	0.024381	1	1439	1439		21.96	5.4867	1	43033	+		49267	35503	34238	34291	54727	54727					0.021802857834245515
LTQNLLAH	8	Unmodified	_LTQNLLAH_					0	0	0		EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7352294921875	2	455.261259	908.507966	-0.27833	-0.00012671	0.28037	0.00012764	0.0020407	9.2907E-07	455.2612741857828	32.246	0.46492	32.088	31.819	32.284	-0.15772					19	10	2	0	0	0	0.027866	1	2187	2187		25.45	7.1258	1	273930			49268	4251	34239	34292	54728	54728					0.05005204617327763
LTQNNEISSS	10	Unmodified	_LTQNNEISSS_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.278076171875	2	546.762017	1091.50948	-0.87979	-0.00048103	0.43542	0.00023807	-0.44437	-0.00024296	546.7622700790619	28.089	0.36142	27.92	27.728	28.089	-0.16897					11	8	2	0	0	0	0.03519	1	1597	1597		26.693	3.6504	1	79754			49269	8799	34240	34293	54729	54729					-0.03261250875220867
LTQRHTDVA	9	Unmodified	_LTQRHTDVA_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7435913085938	2	520.777805	1039.54106	-0.2475	-0.00012889	-2.9873	-0.0015557	-3.2348	-0.0016846	520.7760997196743	37.468	0.82942	37.275	36.966	37.796	-0.193					31	21	2	0	0	0	0.024511	1	3090	3090		25.574	0	1	214810	+		49270	25211	34241	34294	54730	54730					0.022867866693559336
LTQRLTKAL	9	Unmodified	_LTQRLTKAL_					0	0	0			REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	REV__nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2716064453125	2	522.332216	1042.64988	-0.28334	-0.000148	2.3801	0.0012432	2.0967	0.0010952	522.334198242589	42.448	0.13586	42.315	42.216	42.352	-0.13219					5	3	2	0	0	0	0.023635	1	3890	3890		66.429	0	1	21751	+		49271	24977	34242	34295	54731	54731					0.13025997639647358
LTQRVNLIE	9	Unmodified	_LTQRVNLIE_					0	0	0		ENST00000484461.1_1_1:47150073-47162261:-|nuORF;ENSG00000159658|ENST00000371933|EFCAB14	ENST00000484461.1_1_1:47150073-47162261:-|nuORF	ENST00000484461.1_1_1:47150073-47162261:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.2979125976562	2	543.319306	1084.62406	-1.704	-0.00092581	0.85071	0.00046221	-0.85327	-0.0004636	543.3197268424597	62.795	0.38356	62.556	62.394	62.778	-0.23926					15	9	2	0	0	0	0.024405	1	7284	7284		44.117	0	1	1354400			49272	6759	34243	34296	54732	54732					0.08513103397376653
LTQRYGLQDL	10	Unmodified	_LTQRYGLQDL_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5548400878906	3	402.887422	1205.64044	0.94229	0.00037963	-1.1334	-0.00045665	-0.19116	-7.7015E-05	402.8867789937606	22.494	0.59885	22.306	22.007	22.606	-0.18894					17	12	2	0	0	0	0.03519	1	792	792		31.634	0	1	38076	+		49273	26893	34244	34297	54733	54733					0.04584184563486815
LTQTEPYKL	9	Unmodified	_LTQTEPYKL_					0	0	0			REV__SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|25|2|sense	REV__SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|25|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.3136596679688	2	546.800414	1091.58628	-0.19598	-0.00010716	0.3673	0.00020084	0.17132	9.3678E-05	546.8003758478319	45.747	0.45953	45.65	45.427	45.887	-0.096649					21	12	2	0	0	0	0.023274	1	4345	4345		87.696	0	1	702750	+		49274	37608	34245	34298	54734	54734					0.04414592411899321
LTQTQVGQAL	10	Unmodified	_LTQTQVGQAL_					0	0	0		nc|ENSG00000106536|P78424-2|POU6F2;nc|ENSG00000106536|P78424|POU6F2;ENSG00000106536|ENST00000518318|POU6F2;nc|ENSG00000184271|Q14863|POU6F1;ENSG00000184271|ENST00000333640|POU6F1	nc|ENSG00000106536|P78424-2|POU6F2;ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7962646484375	2	529.795663	1057.57677	-1.0976	-0.00058152	-1.3296	-0.00070441	-2.4272	-0.0012859	529.7960146491122	54.39	1.3138	54.39	54.076	55.39	0					126	37	6	0	0	0	0.65479	1	5968	5968		70.816	3.8543	1	8951000			49275	2794;9324	34246	34299	54735	54735					0.05028824126384279
LTQTSMATQTK	11	Unmodified	_LTQTSMATQTK_					0	0	0		ENST00000486260.5_1_1:155170782-155176189:-|nuORF;ENST00000541990.5_1_1:155170782-155174851:-|nuORF	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.1929626464844	3	403.876306	1208.60709	0.14191	5.7315E-05	1.5343	0.00061968	1.6763	0.000677	403.87681674305077	30.618	0.37688	30.373	30.205	30.582	-0.24415					14	8	2	0	0	0	0.024795	1	1964	1964		25.068	10.825	1	70083			49276	15343	34247	34300	54736	54736					0.011128147292538415
LTQTSMATQTK	11	Unmodified	_LTQTSMATQTK_					0	0	0		ENST00000486260.5_1_1:155170782-155176189:-|nuORF;ENST00000541990.5_1_1:155170782-155174851:-|nuORF	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.1932373046875	3	403.876306	1208.60709	-0.34637	-0.00013989	1.8953	0.00076548	1.549	0.00062559	403.8771990348723	30.464	0.54342	30.315	30.099	30.642	-0.14952					18	12	2	0	0	0	0.024765	1	1909	1909		18.966	2.2489	1	59552			49277	15343	34247	34300	54737	54737					0.011128147292538415
LTRAGILTF	9	Unmodified	_LTRAGILTF_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.3009338378906	2	496.300384	990.586216	-0.57254	-0.00028415	0.095079	4.7188E-05	-0.47746	-0.00023697	496.30035473145807	64.549	1.0297	64.315	63.982	65.011	-0.2345					67	25	4	0	0	0	0.15388	2	7334	7334;7346		98.582	13.223	1	4931800			49278	7065	34248	34301	54738;54739	54738					0.09054637202564209
LTRAGILTF	9	Unmodified	_LTRAGILTF_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.3003234863281	2	496.300384	990.586216	-0.18179	-9.0224E-05	-0.29803	-0.00014791	-0.47983	-0.00023814	496.30016274047927	64.522	1.1557	64.32	63.99	65.146	-0.20254					80	28	5	0	0	0	0.14087	2	7350	7337;7350		101.46	24.142	1	5490900			49279	7065	34248	34301	54740;54741	54741					0.09054637202564209
LTRAGILTF	9	Unmodified	_LTRAGILTF_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.3002014160156	2	496.300384	990.586216	-0.64735	-0.00032128	0.20564	0.00010206	-0.44171	-0.00021922	496.30039108214237	64.568	1.1055	64.312	64.038	65.144	-0.25563					64	27	4	0	0	0	0.048057	3	7343	7331;7343;7357		129.42	41.725	1	5403700			49280	7065	34248	34301	54742;54743;54744	54743					0.09054637202564209
LTRALVSAGN	10	Unmodified	_LTRALVSAGN_					0	0	0		ENST00000491065.1_1_20:2641553-2644834:-|nuORF;nc|ENSG00000101365|O43837-2|IDH3B;ENSG00000101365|ENST00000380843|IDH3B	ENST00000491065.1_1_20:2641553-2644834:-|nuORF	ENST00000491065.1_1_20:2641553-2644834:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2902526855469	2	501.290548	1000.56654	0.7613	0.00038163	-0.95491	-0.00047869	-0.19361	-9.7056E-05	501.28990286512953	98.13	1.7563	98.127	97.769	99.525	-0.0020752					83	40	4	0	0	0	1.0816	1	12442	12442		35.152	3.1972	1	1679000			49281	2318	34249	34302	54745	54745					0.06628261191792717
LTRANDPTD	9	Unmodified	_LTRANDPTD_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2914733886719	2	501.74617	1001.47779	-0.52466	-0.00026324	-0.61452	-0.00030833	-1.1392	-0.00057158	502.24958467695683	84.071	0.13091	84.097	83.988	84.119	0.026558					4	2	2	0	0	0	0.024457	1	10436	10436		21.96	0	1	24395	+		49282	22099	34250	34303	54746	54746					-0.022891988385367767
LTRANKPAS	9	Unmodified	_LTRANKPAS_					0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2771911621094	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.67687	1	10053	10053		47.657	0	1	7158600	+		49283	27653	34251	34304	54747	54747					0.06031992020314192
LTRANKPAS	9	Unmodified	_LTRANKPAS_					0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	MSMS	OPSCC_40_ClassI_Rep-2	5	479.27734375	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.328	1	86.185	85.685	86.685	-0.14217								0	0	0	0.65887	1	10486	10486		29.17	1.2878	1		+		49284	27653	34251	34304	54748	54748					0.06031992020314192
LTRANKPAS	9	Unmodified	_LTRANKPAS_					0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2768249511719	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.87448	1	10122	10122		34.173	0	1	7407200	+		49285	27653	34251	34304	54749	54749					0.06031992020314192
LTRDEKCE	8	Unmodified	_LTRDEKCE_					0	0	0			REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.30755615234375	2	497.237124	992.459695	-0.50087	-0.00024905	0.23244	0.00011558	-0.26843	-0.00013347	497.2372478889516	22.219	1.406	22.034	21.425	22.831	-0.18539					35	29	2	0	0	0	0.027866	1	748	748		34.173	0.65696	1	35097	+		49286	33747	34252	34305	54750	54750					-0.036836570848890915
LTRDKIKID	9	Unmodified	_LTRDKIKID_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.3058471679688	2	551.334956	1100.65536	-1.0622	-0.00058563	-0.93368	-0.00051477	-1.9959	-0.0011004	551.3340705386086	33.348	0.099491	33.354	33.288	33.388	0.0066261					4	2	2	0	0	0	0.024466	1	2378	2378		31.53	2.3598	1	45743	+		49287	25027	34253	34306	54751	54751					0.10905676431457323
LTRDKTVVSA	10	Unmodified	_LTRDKTVVSA_					0	0	0		ENST00000483704.5_1_17:17207728-17250258:+|nuORF;ENSG00000205309|ENST00000389022|NT5M	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3169555664062	2	545.316763	1088.61897	-0.40471	-0.0002207	0.11379	6.2053E-05	-0.29092	-0.00015864	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.98527	1	11053	11053		47.96	11.513	1	3438300			49288	10415	34254	34307	54752	54752					0.07820799534783873
LTRDKTVVSA	10	Unmodified	_LTRDKTVVSA_					0	0	0		ENST00000483704.5_1_17:17207728-17250258:+|nuORF;ENSG00000205309|ENST00000389022|NT5M	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3173217773438	2	545.316763	1088.61897	-0.30292	-0.00016519	0.10816	5.8979E-05	-0.19476	-0.00010621	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.98527	1	11041	11041		47.96	10.451	1	17068000			49289	10415	34254	34307	54753	54753					0.07820799534783873
LTRDKTVVSA	10	Unmodified	_LTRDKTVVSA_					0	0	0		ENST00000483704.5_1_17:17207728-17250258:+|nuORF;ENSG00000205309|ENST00000389022|NT5M	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	ENST00000483704.5_1_17:17207728-17250258:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3157348632812	2	545.316763	1088.61897	-0.35893	-0.00019573	-0.19775	-0.00010784	-0.55668	-0.00030357	545.3165463924156	92.202	1.4758	92.061	91.66	93.136	-0.14131					107	34	4	0	0	0	1.1333	1	11319	11319		28.081	0.19925	1	1496200			49290	10415	34254	34307	54754	54754					0.07820799534783873
LTREEQEIRRL	11	Unmodified	_LTREEQEIRRL_					0	0	0		nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2968444824219	3	481.607318	1441.80012	-0.35373	-0.00017036	0.31401	0.00015123	-0.039716	-1.9128E-05	481.60804872891157	46.315	0.30871	46.054	45.891	46.2	-0.26118					15	7	3	0	0	0	0.02477	1	4433	4433		35.178	7.5343	1	112240			49291	4232	34255	34308	54755	54755					0.09689692840629505
LTRFINVSI	9	Unmodified	_LTRFINVSI_					0	0	0			REV__nc|ENSG00000068971|Q15173-2|PPP2R5B	REV__nc|ENSG00000068971|Q15173-2|PPP2R5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.817138671875	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.72494	1	10995	10995		44.377	3.599	1	3781500	+		49292	20392	34256	34309	54756	54756					0.09498308748334239
LTRFLALSVVC	11	Unmodified	_LTRFLALSVVC_					0	0	0			REV__ENSG00000164142|ENST00000435205|FHIP1A	REV__ENSG00000164142|ENST00000435205|FHIP1A	MSMS	OPSCC_40_ClassI_Rep-2	5	611.3551635742188	2	611.354834	1220.69511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.84	1	91.717	91.217	92.217	-0.12341								0	0	0	1.0224	1	11279	11279		42.864	5.0528	1		+		49293	25705	34257	34310	54757	54757					0.09359480110538243
LTRGRCIRL	9	Unmodified	_LTRGRCIRL_					0	0	0		ENST00000557743.2_1_14:89756667-89757087:-|nuORF	ENST00000557743.2_1_14:89756667-89757087:-|nuORF	ENST00000557743.2_1_14:89756667-89757087:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3024291992188	2	544.329485	1086.64442	-0.95544	-0.00052007	2.5926	0.0014112	1.6372	0.00089116	544.3307496347131	65.214	0.5915	65.251	64.967	65.559	0.037384					35	16	3	0	0	0	0.024484	1	7586	7586		45.972	5.1941	1	678890			49294	16739	34258	34311	54758	54758					0.10455995576194255
LTRHEGMDS	9	Unmodified	_LTRHEGMDS_					0	0	0			REV__ENST00000514372.5_3_4:42445594-42446634:-|nuORF	REV__ENST00000514372.5_3_4:42445594-42446634:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.299560546875	2	523.240198	1044.46584	-0.23707	-0.00012404	1.9689	0.0010302	1.7318	0.00090614	523.2413633712314	86.82	0.1243	86.82	86.733	86.857	0					4	2	2	0	0	0	0.024511	1	10911	10911		19.104	0	1	14913	+		49295	34171	34259	34312	54759	54759					-0.0546113885336581
LTRIKHLKEN	10	Unmodified	_LTRIKHLKEN_					0	0	0			REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	626.3795776367188	2	626.380229	1250.7459	0.42062	0.00026347	-1.3282	-0.00083195	-0.90756	-0.00056848	626.3792952337366	104.3	0.95153	104.3	103.98	104.93	0.0031357					73	26	4	0	0	0	1.0728	1	13339	13339		24.519	0	1	2383900	+		49296	20532	34260	34313	54760	54760					0.13056145479754377
LTRIKHLKEN	10	Unmodified	_LTRIKHLKEN_					0	0	0			REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.9223327636719	3	417.922578	1250.7459	-0.52093	-0.00021771	-0.41589	-0.00017381	-0.93682	-0.00039152	417.92234284663687	104.49	1.049	104.36	104.02	105.07	-0.12927					86	34	4	0	0	0	1.1325	1	13010	13010		27.644	3.4121	1	1360400	+		49297	20532	34260	34313	54761	54761					0.13056145479754377
LTRIRDLD	8	Unmodified	_LTRIRDLD_					0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2904357910156	2	501.290548	1000.56654	0.79479	0.00039842	-1.5169	-0.00076043	-0.72216	-0.00036201	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.95679	1	10875	10875		44.117	1.7207	1	8460100	+		49298	19947	34261	34314	54762	54762					0.06628261191792717
LTRIVQCPVG	10	Unmodified	_LTRIVQCPVG_					0	0	0			REV__ENST00000380817.7_1_22:50883433-50883649:-|nuORF	REV__ENST00000380817.7_1_22:50883433-50883649:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.796142578125	2	543.310426	1084.6063	0.0049953	2.714E-06	3.27	0.0017766	3.275	0.0017793	543.8131508441581	71.859	0.64262	71.597	71.159	71.801	-0.26199					22	15	2	0	0	0	0.03519	1	8437	8437		37.812	0	1	209690	+		49299	31498	34262	34315	54763	54763					0.06738064870864946
LTRKFWPHQ	9	Unmodified	_LTRKFWPHQ_					0	0	0			REV__ENSG00000160202|ENST00000291554|CRYAA	REV__ENSG00000160202|ENST00000291554|CRYAA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.1553039550781	3	404.89273	1211.65636	-0.4524	-0.00018317	-4.135	-0.0016742	-4.5874	-0.0018574	404.89083262814313	32.561	0.85159	32.403	32.035	32.886	-0.15772					46	20	3	0	0	0	0.024473	1	2269	2269		20.837	0	1	397920	+		49300	25295	34263	34316	54764	54764					0.0589993559103732
LTRKPILL	8	Unmodified	_LTRKPILL_					0	0	0		ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.3287048339844	2	477.328945	952.643337	0.56814	0.00027119	-0.40108	-0.00019145	0.16706	7.9743E-05	477.3286412961257	78.544	2.5418	78.352	78.016	80.558	-0.1921					152	60	3	0	0	0	0.97794	1	9713	9713		40.778	0	1	3530800			49301	5356	34264	34317	54765	54765					0.16512104478943002
LTRKRLGCC	9	Unmodified	_LTRKRLGCC_					0	0	0			REV__chr15:66460707-66481755|244|10.69|0.06|7.53|+|1|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|5	REV__chr15:66460707-66481755|244|10.69|0.06|7.53|+|1|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2871704101562	2	525.288971	1048.56339	-0.71771	-0.00037701	1.0511	0.00055212	0.33336	0.00017511	525.2896746066618	82.178	0.77384	82.037	81.486	82.26	-0.14014					25	17	2	0	0	0	0.024541	1	9906	9906		16.473	0.83134	1	166200	+		49302	19376	34265	34318	54766	54766					0.041049715418012056
LTRKRPFFV	9	Unmodified	_LTRKRPFFV_					0	0	0		ENST00000078429.8_1_19:3122902-3123160:+|nuORF	ENST00000078429.8_1_19:3122902-3123160:+|nuORF	ENST00000078429.8_1_19:3122902-3123160:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.353271484375	2	582.356025	1162.6975	-0.88276	-0.00051408	-3.513	-0.0020458	-4.3957	-0.0025599	582.3538408674295	102.24	1.4134	102.24	101.94	103.36	0.0073471					111	33	7	0	0	0	0.94809	1	13070	13070		29.15	1.2673	1	7932900			49303	11108	34266	34319	54767	54767					0.12265696630493039
LTRKTWEL	8	Unmodified	_LTRKTWEL_					0	0	0			REV__nc|ENSG00000213347|Q9BW11-4|MXD3	REV__nc|ENSG00000213347|Q9BW11-4|MXD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2785034179688	2	523.803291	1045.59203	0.32412	0.00016977	-0.4877	-0.00025546	-0.16359	-8.5687E-05	523.8030928991843	56.756	0.45653	56.554	56.327	56.783	-0.20209					28	11	3	0	0	0	0.027866	1	6167	6167		40.573	0	1	1603800	+		49304	37125	34267	34320	54768	54768					0.07105735714230832
LTRLANNSL	9	Unmodified	_LTRLANNSL_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2886657714844	2	501.290548	1000.56654	0.31679	0.0001588	-0.37292	-0.00018694	-0.056134	-2.814E-05	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.76818	1	10409	10409		41.427	0.64845	1	1878500	+		49305	25466	34268	34321	54769	54769					0.06628261191792717
LTRLFHPLF	9	Unmodified	_LTRLFHPLF_					0	0	0			REV__ENST00000414513.7_1_X:2536701-2544672:+|nuORF	REV__ENST00000414513.7_1_X:2536701-2544672:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.296875	2	572.337301	1142.66005	-1.9736	-0.0011296	4.3277	0.0024769	2.3541	0.0013474	572.840094919873	64.895	0.25746	64.895	64.725	64.983	0					9	6	2	0	0	0	0.024477	1	7667	7667		35.618	11.099	1	124170	+		49306	32037	34269	34322	54770	54770					0.0944260536487036
LTRLFRVFV	9	Unmodified	_LTRLFRVFV_					0	0	0		ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8438110351562	2	575.858401	1149.70225	-0.90148	-0.00051913	1.5449	0.00088966	0.64343	0.00037053	575.8602507069543	90.858	0.12337	90.733	90.629	90.753	-0.12512					4	2	2	0	0	0	0.024495	1	11133	11133		26.693	15.182	1	45160			49307	5600	34270	34323	54771	54771					0.1333858077325658
LTRLIKSK	8	Unmodified	_LTRLIKSK_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7351989746094	2	479.824027	957.633501	1.6945	0.00081307	-1.7179	-0.00082428	-0.023363	-1.121E-05	479.82187705052223	59.784	0.35274	59.784	59.598	59.951	0					11	9	2	0	0	0	0.027866	1	6841	6841		32.812	3.6629	1	56952	+		49308	19687	34271	34324	54772	54772					0.15298916473557256
LTRLLNNN	8	Unmodified	_LTRLLNNN_					0	0	0			REV__ENSG00000121871|ENST00000475390|SLITRK3	REV__ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27813720703125	2	479.277441	956.540328	-0.48842	-0.00023409	3.4651	0.0016607	2.9767	0.0014266	479.2796754108199	81.053	2.622	80.922	79.525	82.147	-0.13075					131	63	4	0	0	0	0.96769	1	10045	10045		42.396	1.618	1	1507900	+		49309	22612	34272	34325	54773	54773					0.06031992020314192
LTRLMNVIE	9	Unmodified	_LTRLMNVIE_					0	0	0		nc|ENSG00000049541|P35250-2|RFC2;ENSG00000049541|ENST00000055077|RFC2	nc|ENSG00000049541|P35250-2|RFC2	nc|ENSG00000049541|P35250-2|RFC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3246459960938	2	544.810259	1087.60597	-0.4121	-0.00022451	-3.3265	-0.0018123	-3.7386	-0.0020368	544.8083048810987	68.5	0.41083	68.519	68.237	68.648	0.018913					14	10	2	0	0	0	0.024319	1	8119	8119		47.657	0	1	498680			49310	1129	34273	34326	54774	54774					0.06566645151019657
LTRLMNVIE	9	Unmodified	_LTRLMNVIE_					0	0	0		nc|ENSG00000049541|P35250-2|RFC2;ENSG00000049541|ENST00000055077|RFC2	nc|ENSG00000049541|P35250-2|RFC2	nc|ENSG00000049541|P35250-2|RFC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.810259	1087.60597	-0.15443	-8.4133E-05	4.0944	0.0022307	3.94	0.0021466	545.3120562562547	68.592	0.16378	68.362	68.234	68.398	-0.23048	-0.086949	0.0029946	NaN	52.937	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127350			49311	1129	34273	34326							0.06566645151019657
LTRLPFGRA	9	Unmodified	_LTRLPFGRA_					0	0	0			REV__ENSG00000183066|ENST00000328823|WBP2NL	REV__ENSG00000183066|ENST00000328823|WBP2NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7902221679688	2	515.811451	1029.60835	-0.32502	-0.00016765	-1.3624	-0.00070273	-1.6874	-0.00087038	515.8106437458389	52.003	0.6147	52.003	51.736	52.351	0					42	16	3	0	0	0	0.024506	1	5605	5605		23.042	9.5884	1	1003100	+		49312	27533	34274	34327	54775	54775					0.0947286167099719
LTRLPLKP	8	Unmodified	_LTRLPLKP_					0	0	0			REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7650451660156	2	469.313295	936.612037	0.99715	0.00046798	-0.30767	-0.00014439	0.68948	0.00032358	469.3127370780662	72.731	0.69378	72.45	72.18	72.873	-0.28124					31	16	3	0	0	0	0.027866	1	8786	8786		26.796	0	1	289100	+		49313	30248	34275	34328	54776	54776					0.14119531444850963
LTRLQERLI	9	Unmodified	_LTRLQERLI_					0	0	0		ENST00000529280.5_1_11:74992876-74995312:-|nuORF;nc|ENSG00000137486|P49407-2|ARRB1;ENSG00000137486|ENST00000420843|ARRB1	ENST00000529280.5_1_11:74992876-74995312:-|nuORF	ENST00000529280.5_1_11:74992876-74995312:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.3397827148438	2	571.356222	1140.69789	0.54375	0.00031068	-3.1444	-0.0017966	-2.6006	-0.0014859	571.3538013913172	72.324	0.21825	72.043	71.882	72.1	-0.28124					8	5	2	0	0	0	0.02435	1	8768	8768		26.693	5.746	1	80117			49314	5127	34276	34329	54777	54777					0.13317071559686156
LTRLTCAME	9	Carbamidomethyl (C),Oxidation (M)	_LTRLTC(Carbamidomethyl (C))AM(Oxidation (M))E_	LTRLTC(1)AME	LTRLTCAM(1)E	LTRLTC(51)AME	LTRLTCAM(51)E	0	1	1			REV__ENST00000375286.7_1_17:73059416-73059569:+|nuORF	REV__ENST00000375286.7_1_17:73059416-73059569:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7672119140625	2	555.767734	1109.52091	-0.35388	-0.00019667	0.97642	0.00054266	0.62254	0.00034599	555.7681194047783	96.923	0.8495	96.762	96.506	97.356	-0.16105					43	18	3	0	0	0	0.6238	1	11938	11938		51.193	7.0759	1	576980	+		49315	31325	34277	34330	54778	54778	411	879			-0.029464683771038835
LTRLVLSP	8	Unmodified	_LTRLVLSP_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2066955566406	2	449.789653	897.564752	0.12436	5.5934E-05	0.038695	1.7405E-05	0.16305	7.3339E-05	449.78947430387643	22.385	0.61226	22.183	21.903	22.515	-0.20199					28	12	3	0	0	0	0.027866	1	798	798		40.573	21.213	1	220780			49316	1229	34278	34331	54779	54779					0.11187252173851903
LTRLYVTI	8	Unmodified	_LTRLYVTI_					0	0	0		ENSG00000179817|ENST00000314254|MRGPRX4;MRGPRX3|p.T221A|1|0.25|ENSG00000179826|chr11:18137863-18137863|A/G|missense_variant;ENSG00000179826|ENST00000621697|MRGPRX3;ENSG00000170255|ENST00000526914|MRGPRX1	ENSG00000179817|ENST00000314254|MRGPRX4	ENSG00000179817|ENST00000314254|MRGPRX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.8024597167969	2	489.80276	977.590967	1.2495	0.00061199	-1.736	-0.00085029	-0.48652	-0.0002383	489.80186840830345	25.096	0.72148	24.925	24.643	25.364	-0.17151					57	16	5	0	0	0	0.95679	1	1150	1150		44.117	0	1	5140000			49317	8925	34279	34332	54780	54780					0.1012752134532775
LTRMKNLS	8	Unmodified	_LTRMKNLS_					0	0	0		CON__Q3SZH5	CON__Q3SZH5	CON__Q3SZH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.26239013671875	2	481.776219	961.537886	-0.16031	-7.7236E-05	-3.7172	-0.0017908	-3.8775	-0.0018681	481.774424749438	37.587	0.94437	37.587	37.158	38.102	0					38	26	2	0	0	0	0.027866	1	3086	3086		29.15	3.6994	1	1020200		+	49318	553	34280	34333	54781	54781					0.05557820291005555
LTRNGSPRK	9	Unmodified	_LTRNGSPRK_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	MSMS	OPSCC_40_ClassI_Rep-3	6	514.802734375	2	514.801614	1027.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.097	1	59.849	59.349	60.349	-0.24842								0	0	0	0.52604	1	6657	6657		49.442	5.3247	1		+		49319	23222	34281	34334	54782	54782					0.0759848566024175
LTRNKKEEI	9	Unmodified	_LTRNKKEEI_					0	0	0			REV__ENSG00000153975|ENST00000368576|ZUP1	REV__ENSG00000153975|ENST00000368576|ZUP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.3135986328125	2	565.830037	1129.64552	-0.75089	-0.00042488	2.8097	0.0015898	2.0588	0.0011649	565.8323797553977	36.547	0.31796	36.547	36.406	36.724	0					10	8	2	0	0	0	0.024447	1	2909	2909		40.778	12.896	1	104550	+		49320	24923	34282	34335	54783	54783					0.0858848842608495
LTRNMNIKI	9	Unmodified	_LTRNMNIKI_					0	0	0		nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	nc|ENSG00000142731|O00444-3|PLK4	nc|ENSG00000142731|O00444-3|PLK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8236083984375	2	551.823701	1101.63285	-1.3133	-0.00072471	0.65449	0.00036116	-0.65881	-0.00036355	552.3262892557748	75.351	0.28764	75.351	75.194	75.481	0					10	7	2	0	0	0	0.024427	1	9239	9239		42.396	0	1	152750			49321	5586	34283	34336	54784	54784					0.08609753762198125
LTRNVTVTLKH	11	Unmodified	_LTRNVTVTLKH_					0	0	0		nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.3847045898438	2	641.385511	1280.75647	0.67978	0.000436	-1.9683	-0.0012625	-1.2885	-0.00082645	641.3840767110357	101.35	0.78249	101.35	100.99	101.77	0					50	17	4	0	0	0	1.0499	1	12986	12986		25.126	1.6033	1	1108100			49322	8400	34284	34337	54785	54785					0.12732128134166487
LTRPGPKGN	9	Unmodified	_LTRPGPKGN_					0	0	0			REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2720642089844	2	470.272158	938.529764	-1.142	-0.00053707	1.1969	0.00056286	0.054838	2.5789E-05	470.27264567680317	91.314	1.5131	91.165	90.609	92.122	-0.1487					100	35	5	0	0	0	0.91321	1	11191	11191		31.53	7.0258	1	5837400	+		49323	35554	34285	34338	54786	54786					0.05804009365908769
LTRPGPKGN	9	Unmodified	_LTRPGPKGN_					0	0	0			REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.27252197265625	2	470.272158	938.529764	-0.28847	-0.00013566	0.3685	0.0001733	0.080029	3.7635E-05	470.2722458645397	91.332	2.0416	91.209	90.754	92.796	-0.12341					118	48	4	0	0	0	0.82115	1	11217	11217		37.812	5.8567	1	5650700	+		49324	35554	34285	34338	54787	54787					0.05804009365908769
LTRPGSSYF	9	Unmodified	_LTRPGSSYF_					0	0	0		DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant;ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant	DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.2639770507812	2	514.263999	1026.51345	-0.41132	-0.00021153	0.23945	0.00012314	-0.17186	-8.8383E-05	514.2639812552601	47.819	0.90826	47.722	47.314	48.222	-0.097553					71	24	4	0	0	0	0.17845	1	4723	4723		93.143	13.431	1	4915600			49325	659	34286	34339	54788	54788					0.0012488340912568674
LTRPGSSYF	9	Unmodified	_LTRPGSSYF_					0	0	0		DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant;ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant	DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.2633666992188	2	514.263999	1026.51345	-0.70482	-0.00036246	0.35097	0.00018049	-0.35385	-0.00018197	514.2640451283866	48.148	0.80151	47.872	47.561	48.362	-0.27598					69	21	5	0	0	0	0.12914	2	4744	4744;4757		104.06	24.344	1	5028400			49326	659	34286	34339	54789;54790	54789					0.0012488340912568674
LTRPGSSYF	9	Unmodified	_LTRPGSSYF_					0	0	0		DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant;ENST00000488868.1_1_1:28537058-28556683:-|nuORF;ENST00000482674.5_1_1:28537058-28559509:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant	DNAJC8|p.E44K|1|0.28|ENSG00000126698|chr1:28228972-28228972|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2635498046875	2	514.263999	1026.51345	0.25781	0.00013258	-0.6318	-0.00032491	-0.37398	-0.00019233	514.263558995375	47.949	1.024	47.762	47.239	48.263	-0.18684					73	27	4	0	0	0	0.086035	1	4728	4728		115.49	18.021	1	4763200			49327	659	34286	34339	54791	54791					0.0012488340912568674
LTRPLLDERLQ	11	Unmodified	_LTRPLLDERLQ_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9328308105469	3	451.933143	1352.7776	-0.033263	-1.5033E-05	-1.0887	-0.00049204	-1.122	-0.00050707	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0558	1	12364	12364		23.514	3.1993	1	1141700	+		49328	24992	34287	34340	54792	54792					0.11532093443042868
LTRPLRHLP	9	Unmodified	_LTRPLRHLP_					0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.818115234375	2	551.845825	1101.6771	-0.93245	-0.00051457	2.4258	0.0013387	1.4933	0.0008241	551.8480589850074	62.745	0.20316	62.745	62.651	62.854	0					5	4	2	0	0	0	0.024506	1	7297	7297		30.504	11.4	1	50435	+		49329	26546	34288	34341	54793	54793					0.1303252597069786
LTRPWEGAC	9	Unmodified	_LTRPWEGAC_					0	0	0			REV__ENST00000525346.5_2_11:71158764-71159345:-|nuORF	REV__ENST00000525346.5_2_11:71158764-71159345:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7349243164062	2	516.750201	1031.48585	-0.8304	-0.00042911	-1.4837	-0.0007667	-2.3141	-0.0011958	516.7496403224366	43.842	0.15211	43.598	43.52	43.672	-0.2444					5	3	2	0	0	0	0.024427	1	4041	4041		26.693	3.6504	1	90212	+		49330	34412	34289	34342	54794	54794					-0.02863343122749029
LTRQPLTA	8	Unmodified	_LTRQPLTA_					0	0	0			REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.26904296875	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.87148	1	3174	3174		53.351	0.41475	1	125590000	+		49331	27082	34290	34343	54795	54795					0.07029491134369437
LTRRLPCWVPL	11	Unmodified	_LTRRLPCWVPL_					0	0	0		ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	ENST00000492155.5_1_10:13749216-13749624:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.9328308105469	3	451.932309	1352.7751	0.5373	0.00024282	0.24261	0.00010964	0.77991	0.00035247	451.9323503655758	98.697	1.9732	98.697	97.898	99.871	0					179	45	5	0	0	0	1.0123	1	12699	12699		34.087	3.5176	1	1528000			49332	15474	34291	34344	54796	54796					0.11281966504361662
LTRRRDLVYHI	11	Unmodified	_LTRRRDLVYHI_					0	0	0			REV__ENSG00000113532|ENST00000231461|ST8SIA4	REV__ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28302001953125	3	481.284398	1440.83137	0.87515	0.00042119	-2.6172	-0.0012596	-1.7421	-0.00083843	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.0592	1	12635	12635		22.562	0.78116	1	1033300	+		49333	22071	34292	34345	54797	54797					0.128583106654105
LTRSILLLP	9	Unmodified	_LTRSILLLP_					0	0	0			REV__nc|ENSG00000166073|Q14439-2|GPR176	REV__nc|ENSG00000166073|Q14439-2|GPR176	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2689819335938	2	513.33951	1024.66447	-1.189	-0.00061035	0.8281	0.0004251	-0.36087	-0.00018525	513.3395840844979	79.789	0.50632	79.616	79.316	79.822	-0.17226					20	11	3	0	0	0	0.024205	1	9849	9849		44.117	0	1	121210	+		49334	36881	34293	34346	54798	54798					0.15312069787819382
LTRSLAEIV	9	Unmodified	_LTRSLAEIV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.78741455078125	2	501.303124	1000.5917	-0.086043	-4.3134E-05	1.849	0.00092693	1.763	0.0008838	501.3039996779283	72.791	0.43085	72.514	72.325	72.756	-0.2769					16	9	2	0	0	0	0.024484	1	8508	8508		37.812	8.662	1	79964			49335	6454	34294	34347	54799	54799					0.09142315994381534
LTRSLAEIV	9	Unmodified	_LTRSLAEIV_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.303124	1000.5917	-0.096235	-4.8243E-05	3.0929	0.0015505	2.9967	0.0015023	501.30459631404034	72.924	0.42473	72.659	72.343	72.767	-0.26479	0.07242	0.00029915	NaN	51.193	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123410			49336	6454	34294	34347							0.09142315994381534
LTRSRSEMDL	10	Unmodified	_LTRSRSEMDL_					0	0	0		ENST00000412368.6_1_16:731722-731938:-|nuORF	ENST00000412368.6_1_16:731722-731938:-|nuORF	ENST00000412368.6_1_16:731722-731938:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.208740234375	3	403.208167	1206.60267	0.84726	0.00034162	-0.23454	-9.4569E-05	0.61272	0.00024705	403.2077709795618	19.904	1.1573	19.904	19.644	20.801	0					56	23	4	0	0	0	1.1081	1	477	477		31.634	4.587	1	142080			49337	13817	34295	34348	54800	54800					0.007633503063743774
LTRSRSEMDL	10	Unmodified	_LTRSRSEMDL_					0	0	0		ENST00000412368.6_1_16:731722-731938:-|nuORF	ENST00000412368.6_1_16:731722-731938:-|nuORF	ENST00000412368.6_1_16:731722-731938:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	403.208167	1206.60267	0.17548	7.0755E-05	1.0422	0.00042021	1.2177	0.00049097	403.20802180207943	20.178	1.3977	20.073	19.745	21.143	-0.10477	-0.033689	0.0012128	NaN	31.634	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160290			49338	13817	34295	34348							0.007633503063743774
LTRSRSEMDL	10	Unmodified	_LTRSRSEMDL_					0	0	0		ENST00000412368.6_1_16:731722-731938:-|nuORF	ENST00000412368.6_1_16:731722-731938:-|nuORF	ENST00000412368.6_1_16:731722-731938:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	403.208167	1206.60267	3.4878	0.0014063	-2.1894	-0.00088279	1.2984	0.00052352	403.20650864434174	20.273	1.1324	20.342	20.021	21.153	0.068901	0.23566	-0.0026962	NaN	31.634	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104910			49339	13817	34295	34348							0.007633503063743774
LTRSSRRAG	9	Unmodified	_LTRSSRRAG_					0	0	0			REV__ENST00000380574.5_2_11:2923688-2923841:+|nuORF	REV__ENST00000380574.5_2_11:2923688-2923841:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2841796875	2	502.291414	1002.56827	0.64984	0.00032641	1.8121	0.0009102	2.4619	0.0012366	502.2928557613445	85.167	3.3995	85.017	83.723	87.122	-0.14967					131	79	2	0	0	0	0.024367	1	10339	10339		29.17	0	1	1440600	+		49340	31482	34296	34349	54801	54801					0.06709315000421157
LTRTATELV	9	Unmodified	_LTRTATELV_					0	0	0			REV__ENST00000402802.7_1_7:537671-537887:-|nuORF	REV__ENST00000402802.7_1_7:537671-537887:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2748107910156	2	502.292756	1002.57096	0.24833	0.00012474	-1.0095	-0.00050706	-0.76115	-0.00038232	502.2921312095697	49.064	0.53498	49.064	48.864	49.399	0					27	14	3	0	0	0	0.023635	1	5027	5027		66.429	0	1	381520	+		49341	31878	34297	34350	54802	54802					0.06977725614706287
LTRTKRLN	8	Unmodified	_LTRTKRLN_					0	0	0			REV__ENSG00000185418|ENST00000335968|TARS3	REV__ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.29071044921875	2	501.314358	1000.61416	0.25258	0.00012662	3.0509	0.0015295	3.3035	0.0016561	501.3159052933351	84.905	0.12309	84.768	84.705	84.828	-0.13753					4	2	2	0	0	0	0.027866	1	10266	10266		11.511	0	1	19499	+		49342	27760	34298	34351	54803	54803					0.11387960182651113
LTRTTIKDK	9	Unmodified	_LTRTTIKDK_					0	0	0			REV__ENSG00000277791|ENST00000619426|PSMB3	REV__ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3272094726562	2	538.327131	1074.63971	0.30756	0.00016557	-0.34471	-0.00018557	-0.037144	-1.9996E-05	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.91321	1	12385	12385		31.53	0	1	21168000	+		49343	29208	34299	34352	54804	54804					0.10537389914406958
LTRTTIKDK	9	Unmodified	_LTRTTIKDK_					0	0	0			REV__ENSG00000277791|ENST00000619426|PSMB3	REV__ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3271484375	2	538.327131	1074.63971	0.47679	0.00025667	-0.59753	-0.00032167	-0.12074	-6.4998E-05	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	0.84115	1	12400	12400		36.447	4.4919	1	21461000	+		49344	29208	34299	34352	54805	54805					0.10537389914406958
LTRTTSGLL	9	Unmodified	_LTRTTSGLL_					0	0	0			REV__ENST00000361171.7_1_9:129266081-129266318:+|nuORF	REV__ENST00000361171.7_1_9:129266081-129266318:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2885437011719	2	481.287474	960.560395	-0.27734	-0.00013348	3.8736	0.0018643	3.5963	0.0017308	481.289185613373	62.96	1.895	62.96	62.489	64.384	0					106	50	4	0	0	0	0.45795	1	7369	7369		62.107	3.8775	1	11079000	+		49345	30935	34300	34353	54806	54806					0.0785374296029886
LTRTTWLQP	9	Unmodified	_LTRTTWLQP_					0	0	0		ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.27734375	2	558.314023	1114.61349	-0.21691	-0.0001211	-0.4411	-0.00024627	-0.658	-0.00036737	558.3136005505805	68.539	0.60519	68.539	68.332	68.938	0					24	15	2	0	0	0	0.024427	1	8208	8208		42.396	11.892	1	323070			49346	16730	34301	34354	54807	54807					0.06077120742929765
LTRTTWLQP	9	Unmodified	_LTRTTWLQP_					0	0	0		ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.314023	1114.61349	-0.43727	-0.00024413	0.155	8.6539E-05	-0.28227	-0.00015759	558.3136366047971	68.542	0.2406	68.281	68.142	68.382	-0.26166	-0.19516	0.0005822	NaN	42.396	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190240			49347	16730	34301	34354							0.06077120742929765
LTRTTWLQP	9	Unmodified	_LTRTTWLQP_					0	0	0		ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	ENST00000557324.5_1_14:45599079-45599966:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.314023	1114.61349	0.37363	0.0002086	-0.055493	-3.0982E-05	0.31813	0.00017762	558.3129854270495	68.484	0.43668	68.241	68.033	68.47	-0.24277	-0.23445	0.00034715	NaN	42.396	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172130			49348	16730	34301	34354							0.06077120742929765
LTRVELLTF	9	Unmodified	_LTRVELLTF_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.3053588867188	2	546.326599	1090.63865	-1.4623	-0.00079887	0.75761	0.0004139	-0.70466	-0.00038497	546.3269391422637	81.064	1.2613	80.933	80.364	81.625	-0.13075					58	30	2	0	0	0	0.024319	1	10068	10068		66.429	15.094	1	543750			49349	10117	34302	34355	54808	54808					0.09695175545516577
LTRVETFGF	9	Unmodified	_LTRVETFGF_					0	0	0		nc|ENSG00000291154|O95744|PMS2P2	nc|ENSG00000291154|O95744|PMS2P2	nc|ENSG00000291154|O95744|PMS2P2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7286987304688	2	535.287474	1068.5604	-1.1325	-0.0006062	0.83016	0.00044437	-0.30231	-0.00016182	535.2876086794092	60.647	0.4523	60.393	60.092	60.544	-0.25373					19	10	3	0	0	0	0.024427	1	6699	6699		34.173	3.6689	1	125660			49350	18837	34303	34356	54809	54809					0.028857429602794582
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2977905273438	2	547.298039	1092.58152	-1.028	-0.00056265	0.66298	0.00036285	-0.36506	-0.0001998	547.2983358057799	55.416	1.0362	55.27	54.986	56.022	-0.14609					73	28	4	0	0	0	0.14087	1	5939	5939		101.46	24.142	1	7177600			49351	3731	34304	34357	54810	54810					0.0389370826915183
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2981567382812	2	547.298039	1092.58152	-0.27667	-0.00015142	-0.21341	-0.0001168	-0.49008	-0.00026822	547.297873358046	55.506	1.4654	55.276	54.638	56.103	-0.23087					89	40	4	0	0	0	0.087669	3	5946	5946;5957;5969		114.89	7.8871	1	8285800			49352	3731	34304	34357	54811;54812;54813	54811					0.0389370826915183
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.298039	1092.58152	0.36404	0.00019924	-0.55012	-0.00030108	-0.18608	-0.00010184	547.2974297070582	55.489	0.64303	55.489	55.249	55.892	0	0.16082	-0.00094806	NaN	114.89	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1774100			49353	3731	34304	34357							0.0389370826915183
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.298039	1092.58152	-0.66633	-0.00036468	0.46396	0.00025393	-0.20237	-0.00011076	547.2979815685749	55.543	0.87145	55.387	55.16	56.031	-0.15601	0.058892	0.00016195	NaN	114.89	48	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1551500			49354	3731	34304	34357							0.0389370826915183
LTRVEVTEF	9	Unmodified	_LTRVEVTEF_					0	0	0		ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	547.298039	1092.58152	-1.6798	-0.00091937	1.7834	0.00097604	0.10355	5.6673E-05	547.2986793145037	55.197	0.73668	55.295	55.083	55.819	0.098015	-0.032874	0.0016062	NaN	114.89	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1432700			49355	3731	34304	34357							0.0389370826915183
LTRVIWEL	8	Unmodified	_LTRVIWEL_					0	0	0		ENST00000394071.6_2_14:74184432-74184528:-|nuORF	ENST00000394071.6_2_14:74184432-74184528:-|nuORF	ENST00000394071.6_2_14:74184432-74184528:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2886352539062	2	515.30821	1028.60187	-1.305	-0.00067246	1.7537	0.00090368	0.4487	0.00023122	515.3084758100259	40.619	0.91975	40.389	40.083	41.003	-0.2303					39	24	3	0	0	0	0.027866	1	3479	3479		32.812	3.6629	1	558580			49356	13480	34305	34358	54814	54814					0.08870923719587154
LTRVREMQ	8	Unmodified	_LTRVREMQ_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7723999023438	2	516.784576	1031.5546	-0.08	-4.1343E-05	2.343	0.0012108	2.263	0.0011695	516.7859414252034	72.253	0.41016	71.977	71.788	72.198	-0.2755					12	9	2	0	0	0	0.027866	1	8476	8476		30.504	0	1	39938	+		49357	19737	34306	34359	54815	54815					0.040083211769797344
LTRVRPDY	8	Unmodified	_LTRVRPDY_					0	0	0		ENSG00000074071|ENST00000397375|MRPS34	ENSG00000074071|ENST00000397375|MRPS34	ENSG00000074071|ENST00000397375|MRPS34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7550048828125	2	510.285266	1018.55598	-0.43398	-0.00022146	-0.30705	-0.00015668	-0.74104	-0.00037814	510.285119413177	36.826	1.0492	36.864	36.444	37.493	0.038044					49	27	3	0	0	0	0.027866	1	2996	2996		37.159	25.648	1	169310			49358	1523	34307	34360	54816	54816					0.04744278537373248
LTRVRPDY	8	Unmodified	_LTRVRPDY_					0	0	0		ENSG00000074071|ENST00000397375|MRPS34	ENSG00000074071|ENST00000397375|MRPS34	ENSG00000074071|ENST00000397375|MRPS34	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.285266	1018.55598	0.52085	0.00026578	-1.5467	-0.00078925	-1.0258	-0.00052347	510.2844364665964	36.769	0.94018	36.769	36.474	37.414	0	-0.017723	-0.00108	NaN	29.15	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142460			49359	1523	34307	34360							0.04744278537373248
LTRVRPDY	8	Unmodified	_LTRVRPDY_					0	0	0		ENSG00000074071|ENST00000397375|MRPS34	ENSG00000074071|ENST00000397375|MRPS34	ENSG00000074071|ENST00000397375|MRPS34	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.285266	1018.55598	-0.18423	-9.401E-05	-0.23724	-0.00012106	-0.42147	-0.00021507	510.2850513189251	36.792	0.72418	36.728	36.328	37.052	-0.063385	-0.059004	0.00025639	NaN	29.15	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134690			49360	1523	34307	34360							0.04744278537373248
LTRWPPPD	8	Unmodified	_LTRWPPPD_					0	0	0		nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;ENST00000443231.5_1_1:155649769-155658455:-|nuORF;ENST00000311573.9_1_1:155649295-155658075:-|nuORF	nc|ENSG00000163374|Q9H869|YY1AP1	nc|ENSG00000163374|Q9H869|YY1AP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2748718261719	2	491.261259	980.507966	0.1385	6.8039E-05	3.7906	0.0018622	3.9291	0.0019302	491.2630094369681	75.523	0.91501	75.533	75.25	76.165	0.010376					63	24	4	0	0	0	0.027866	1	9230	9230		44.117	21.074	1	2686500			49361	18445	34308	34361	54817	54817					0.01693204617322408
LTRWRRAS	8	Unmodified	_LTRWRRAS_					0	0	0			REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	REV__MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3037719726562	2	523.304324	1044.5941	0.49835	0.00026079	-3.3097	-0.001732	-2.8113	-0.0014712	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	1.0198	1	11142	11142		34.173	5.023	1	11897000	+		49362	36411	34309	34362	54818	54818					0.07358209242693192
LTSAAPQSKT	10	Unmodified	_LTSAAPQSKT_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7731628417969	2	502.274564	1002.53457	-0.73118	-0.00036725	-2.1435	-0.0010766	-2.8747	-0.0014439	502.27378744555233	44.146	0.76857	44.042	43.471	44.239	-0.10468					32	20	3	0	0	0	0.03519	1	4106	4106		7.3997	0	1	722310	+		49363	19339	34310	34363	54819	54819					0.033408487179940494
LTSCPMLCLC	10	Unmodified	_LTSCPMLCLC_					0	0	0			REV__ENST00000319080.7_12:122626711-122626864:+|nuORF	REV__ENST00000319080.7_12:122626711-122626864:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.3009643554688	2	542.238909	1082.46327	-1.2592	-0.00068278	0.3422	0.00018556	-0.91698	-0.00049722	542.2389735477987	65.276	0.77116	65.025	64.665	65.437	-0.25112					29	18	2	0	0	0	0.03519	1	7420	7420		44.117	0	1	497530	+		49364	30320	34311	34364	54820	54820					-0.07466769898542225
LTSCRPKP	8	Unmodified	_LTSCRPKP_					0	0	0		ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.76654052734375	2	451.249837	900.485122	-0.29246	-0.00013197	-0.023448	-1.0581E-05	-0.31591	-0.00014255	451.24971030608265	45.301	0.79137	45.201	44.633	45.424	-0.099449					58	21	4	0	0	0	0.027866	1	4232	4232		25.45	0	1	1351000			49365	11529	34312	34365	54821	54821					0.0308986222820522
LTSCRPKP	8	Unmodified	_LTSCRPKP_					0	0	0		ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.249837	900.485122	-0.41578	-0.00018762	-0.012506	-5.6433E-06	-0.42829	-0.00019327	451.2497648901754	45.34	0.52319	45.129	44.793	45.316	-0.21109	-0.025375	0.00012798	NaN	16.473	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614620			49366	11529	34312	34365							0.0308986222820522
LTSDLSPHLL	10	Unmodified	_LTSDLSPHLL_					0	0	0		ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7778930664062	2	548.305864	1094.59717	-0.30534	-0.00016742	0.061644	3.38E-05	-0.24369	-0.00013362	548.3057564929009	72.715	0.89787	72.438	72.028	72.926	-0.2769					46	20	3	0	0	0	0.03519	1	8544	8544		51.335	8.9393	1	379000			49367	4118	34313	34366	54822	54822					0.05365994786188821
LTSDLSPHLL	10	Unmodified	_LTSDLSPHLL_					0	0	0		ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.305864	1094.59717	-0.094025	-5.1554E-05	-4.1568	-0.0022792	-4.2508	-0.0023307	548.8045428198468	72.97	0.2851	72.689	72.547	72.832	-0.28124	0.20445	-0.0040446	NaN	51.335	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189040			49368	4118	34313	34366							0.05365994786188821
LTSDLSPHLL	10	Unmodified	_LTSDLSPHLL_					0	0	0		ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.305864	1094.59717	-0.092091	-5.0494E-05	-0.76849	-0.00042137	-0.86059	-0.00047186	548.305518083041	72.735	0.9332	72.47	72.084	73.017	-0.26479	-0.014615	-0.00032896	NaN	51.335	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213430			49369	4118	34313	34366							0.05365994786188821
LTSDLSPHLL	10	Unmodified	_LTSDLSPHLL_					0	0	0		ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.305864	1094.59717	-0.73774	-0.00040451	-0.45546	-0.00024973	-1.1932	-0.00065424	548.3058308393064	72.539	0.80318	72.341	71.992	72.795	-0.19811	-0.14353	1.4307E-05	NaN	51.335	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175740			49370	4118	34313	34366							0.05365994786188821
LTSEEFNAI	9	Unmodified	_LTSEEFNAI_					0	0	0		ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2540283203125	2	512.253297	1022.49204	0.0020289	1.0393E-06	0.28449	0.00014573	0.28652	0.00014677	512.2535245500372	53.952	2.95	54.05	53.631	56.581	0.098015					227	82	5	0	0	0	0.70186	1	5795	5795		45.952	1.8352	1	29194000			49371	8243	34314	34367	54823	54823					-0.018305464102354563
LTSERDVLP	9	Unmodified	_LTSERDVLP_					0	0	0		nc|ENSG00000082482|O95069-2|KCNK2;nc|ENSG00000082482|O95069-3|KCNK2;ENSG00000082482|ENST00000444842|KCNK2	nc|ENSG00000082482|O95069-2|KCNK2	nc|ENSG00000082482|O95069-2|KCNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.271728515625	2	515.282389	1028.55022	-0.41616	-0.00021444	-0.87545	-0.00045111	-1.2916	-0.00066554	515.2822299615902	48.836	0.13805	48.836	48.761	48.899	0					9	3	4	0	0	0	0.024205	1	5013	5013		63.306	19.189	1	749880			49372	1734	34315	34368	54824	54824					0.03709135235044414
LTSFGLSNKI	10	Unmodified	_LTSFGLSNKI_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.3109130859375	2	540.308406	1078.60226	-0.47747	-0.00025798	0.35896	0.00019395	-0.11851	-6.4033E-05	540.3085665142206	72.705	1.6546	72.428	72.07	73.724	-0.2769					110	39	4	0	0	0	0.45418	1	8586	8586		93.143	5.3889	1	7118500			49373	1774	34316	34369	54825	54825					0.0661029864882039
LTSFGLSNKI	10	Unmodified	_LTSFGLSNKI_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.3094482421875	2	540.308406	1078.60226	-1.3809	-0.00074612	0.77175	0.00041698	-0.60917	-0.00032914	540.3088441516943	72.512	1.6039	72.314	71.949	73.553	-0.1981					116	38	5	0	0	0	0.58878	1	8550	8550		78.264	0.9462	1	13980000			49374	1774	34316	34369	54826	54826					0.0661029864882039
LTSFYIDI	8	Unmodified	_LTSFYIDI_					0	0	0			REV__ENSG00000152705|ENST00000282611|CATSPER3	REV__ENSG00000152705|ENST00000282611|CATSPER3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2918395996094	2	486.257851	970.501149	0.49425	0.00024033	3.2046	0.0015583	3.6989	0.0017986	486.25962605488024	60.139	0.18469	59.942	59.874	60.059	-0.19742					5	4	2	0	0	0	0.027866	1	6683	6683		42.474	11.971	1	89812	+		49375	24860	34317	34370	54827	54827					0.014718469460945016
LTSIFNPK	8	Unmodified	_LTSIFNPK_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.2219543457031	2	460.26601	918.517468	-0.066008	-3.0381E-05	2.251	0.001036	2.1849	0.0010057	460.2668134634098	41.951	1.2625	41.828	41.227	42.49	-0.12299					60	33	3	0	0	0	0.027866	1	3844	3844		7.6903	0	1	1061400	+		49376	22799	34319	34371	54828	54828					0.05494972902852169
LTSITLIKA	9	Unmodified	_LTSITLIKA_					0	0	0			REV__ENSG00000145626|ENST00000274278|UGT3A1	REV__ENSG00000145626|ENST00000274278|UGT3A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.7615661621094	2	480.310418	958.606283	0.13241	6.3598E-05	-0.47663	-0.00022893	-0.34422	-0.00016533	480.3104749569427	74.576	0.21949	74.313	74.142	74.361	-0.26326					6	4	2	0	0	0	0.024487	1	8801	8801		17.365	0	1	62294	+		49377	24418	34320	34372	54829	54829					0.12532388142517448
LTSITNVEPK	10	Unmodified	_LTSITNVEPK_					0	0	0		nc|ENSG00000173068|Q6ZN30-2|BNC2;ENSG00000173068|ENST00000380672|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2891235351562	2	551.311146	1100.60774	-0.47698	-0.00026297	1.8615	0.0010263	1.3845	0.0007633	551.3120228667769	47.865	0.40897	47.767	47.63	48.039	-0.097553					15	10	2	0	0	0	0.03519	1	4747	4747		75.043	1.0686	1	138150			49378	8337	34321	34373	54830	54830					0.06145977440610295
LTSLALPGK	9	Unmodified	_LTSLALPGK_					0	0	0		ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2816162109375	2	450.28166	898.548768	0.14321	6.4487E-05	-0.44759	-0.00020154	-0.30438	-0.00013705	450.2814254811188	51.171	1.2719	50.895	50.589	51.861	-0.27643					88	33	4	0	0	0	0.6504	1	5274	5274		49.442	5.3247	1	16047000			49379	4592	34322	34374	54831	54831					0.09543545936958253
LTSLCRAL	8	Unmodified	_LTSLCRAL_					0	0	0			REV__ENSG00000165349|ENST00000374299|SLC7A3	REV__ENSG00000165349|ENST00000374299|SLC7A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.75042724609375	2	438.752213	875.489873	-1.0678	-0.00046849	-2.8097	-0.0012328	-3.8775	-0.0017013	438.7508854383763	44.872	0.64803	44.773	44.472	45.12	-0.099449					44	16	4	0	0	0	0.5947	1	4210	4210		76.774	2.5191	1	1829800	+		49380	25876	34323	34375	54832	54832					0.04714746370973444
LTSLGKLTLN	10	Unmodified	_LTSLGKLTLN_					0	0	0		CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant;ENSG00000178772|ENST00000323830|CPN2	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7788696289062	2	530.324057	1058.63356	0.032108	1.7028E-05	-0.14101	-7.4783E-05	-0.10891	-5.7755E-05	530.323979129017	86.1	0.39362	85.911	85.727	86.121	-0.18918					16	8	2	0	0	0	0.03519	1	10438	10438		44.377	1.5129	1	72592			49381	581	34324	34376	54833	54833					0.10658871682903737
LTSLLLMKV	9	Unmodified	_LTSLLLMKV_					0	0	0			REV__ENST00000556905.2_1_15:22016140-22016464:-|nuORF	REV__ENST00000556905.2_1_15:22016140-22016464:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.77850341796875	2	509.322471	1016.63039	-0.39813	-0.00020278	0.65628	0.00033426	0.25815	0.00013148	509.32286050156773	78.341	0.65765	78.341	78.042	78.7	0					44	15	4	0	0	0	0.024436	1	9746	9746		47.916	14.423	1	3718500	+		49382	35051	34325	34377	54834	54834					0.12273905304550681
LTSLTSHPLV	10	Unmodified	_LTSLTSHPLV_					0	0	0			REV__nc|ENSG00000183570|P57721-2|PCBP3	REV__nc|ENSG00000183570|P57721-2|PCBP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7593994140625	2	534.308406	1066.60226	-0.48711	-0.00026027	4.3604	0.0023298	3.8733	0.0020695	534.3107192317858	72.95	0.29843	72.685	72.469	72.767	-0.26479					9	6	2	0	0	0	0.03519	1	8575	8575		40.778	14.085	1	46075	+		49383	27583	34326	34378	54835	54835					0.07162298648790966
LTSLTSHPLV	10	Unmodified	_LTSLTSHPLV_					0	0	0			REV__nc|ENSG00000183570|P57721-2|PCBP3	REV__nc|ENSG00000183570|P57721-2|PCBP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.308406	1066.60226	-0.48611	-0.00025973	3.6343	0.0019418	3.1482	0.0016821	534.3101186817954	72.672	0.45358	72.672	72.414	72.867	0	-0.035986	0.00014167	NaN	40.778	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80398	+		49384	27583	34326	34378							0.07162298648790966
LTSLTSHPLV	10	Unmodified	_LTSLTSHPLV_					0	0	0			REV__nc|ENSG00000183570|P57721-2|PCBP3	REV__nc|ENSG00000183570|P57721-2|PCBP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.308406	1066.60226	-0.0069698	-3.724E-06	3.3773	0.0018045	3.3703	0.0018008	534.3100728095878	73.014	0.32613	72.732	72.547	72.873	-0.28124	0.02386	-0.00013301	NaN	40.778	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56838	+		49385	27583	34326	34378							0.07162298648790966
LTSLTSHPLV	10	Unmodified	_LTSLTSHPLV_					0	0	0			REV__nc|ENSG00000183570|P57721-2|PCBP3	REV__nc|ENSG00000183570|P57721-2|PCBP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.308406	1066.60226	-0.08597	-4.5935E-05	2.9395	0.0015706	2.8535	0.0015247	534.3099021526136	72.734	0.33023	72.744	72.529	72.859	0.0096512	0.03558	-0.00060082	NaN	40.778	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74866	+		49386	27583	34326	34378							0.07162298648790966
LTSLYPQN	8	Unmodified	_LTSLYPQN_					0	0	0		nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000590921.1_1_19:55966625-55966832:-|nuORF	nc|ENSG00000063241|Q96AB3-2|ISOC2	nc|ENSG00000063241|Q96AB3-2|ISOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.244873046875	2	468.245275	934.475997	0.20109	9.4162E-05	-1.2222	-0.00057229	-1.0211	-0.00047813	468.2445715077833	103.12	2.3598	103.12	102.32	104.68	0.0054245					123	59	5	0	0	0	0.98759	1	13234	13234		39.253	2.0937	1	6608800			49387	18058	34327	34379	54836	54836					0.006137921435197313
LTSMRYLL	8	Unmodified	_LTSMRYLL_					0	0	0		ENST00000431877.6_1_2:182794639-182794672:+|nuORF	ENST00000431877.6_1_2:182794639-182794672:+|nuORF	ENST00000431877.6_1_2:182794639-182794672:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7894592285156	2	498.78097	995.547388	-0.19676	-9.814E-05	-3.198	-0.0015951	-3.3947	-0.0016932	498.7785869212624	69.98	0.40504	69.992	69.627	70.032	0.012421					15	9	2	0	0	0	0.027866	1	8371	8371		65.803	0	1	167310			49388	14192	34328	34380	54837	54837					0.04943588576554703
LTSMWMLN	8	Unmodified	_LTSMWMLN_					0	0	0			REV__ENST00000268182.9_1_15:91026791-91027525:+|nuORF	REV__ENST00000268182.9_1_15:91026791-91027525:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2975769042969	2	498.238081	994.461609	-0.17578	-8.7581E-05	-0.30239	-0.00015066	-0.47817	-0.00023824	498.23771198766843	61.73	0.55234	61.73	61.492	62.044	0					33	14	3	0	0	0	0.027866	1	7180	7180		65.803	2.8247	1	432920	+		49389	29778	34329	34381	54838	54838					-0.035843196006339895
LTSMYETV	8	Unmodified	_LTSMYETV_					0	0	0			REV__ENSG00000138722|ENST00000264790|MMRN1	REV__ENSG00000138722|ENST00000264790|MMRN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7667236328125	2	472.225694	942.436834	1.2794	0.00060416	0.70874	0.00033469	1.9881	0.00093884	472.2266569370737	71.303	0.39122	71.014	70.802	71.193	-0.28857					12	9	2	0	0	0	0.027866	1	8625	8625		60.294	0	1	56408	+		49390	23890	34330	34382	54839	54839					-0.03668676202357801
LTSNKSKDD	9	Unmodified	_LTSNKSKDD_					0	0	0		nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-4|KHDC4;ENST00000466713.1_1_1:155896424-155904164:-|nuORF;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENSG00000132680|ENST00000368321|KHDC4	nc|ENSG00000132680|Q7Z7F0-3|KHDC4	nc|ENSG00000132680|Q7Z7F0-3|KHDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2671813964844	2	504.253828	1006.4931	0.089833	4.5299E-05	-4.3244	-0.0021806	-4.2346	-0.0021353	504.24912382415766	71.09	1.6093	71.101	70.306	71.916	0.010735					59	40	3	0	0	0	0.024209	1	8574	8574		39.253	0	1	455010			49391	18277	34331	34383	54840	54840					-0.00988332041333706
LTSNLTRIKHL	11	Unmodified	_LTSNLTRIKHL_					0	0	0			REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	648.3932495117188	2	648.393336	1294.77212	1.2288	0.00079673	-2.0637	-0.0013381	-0.83493	-0.00054136	648.3919129843497	105.35	0.84909	105.35	104.93	105.78	0.00096893					59	28	4	0	0	0	1.0344	1	13496	13496		29.17	2.1227	1	1056100	+		49392	20532	34332	34384	54841	54841					0.13652414651210165
LTSPDVRSF	9	Unmodified	_LTSPDVRSF_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2894592285156	2	511.269281	1020.52401	0.07884	4.0309E-05	-0.48316	-0.00024702	-0.40432	-0.00020672	511.26884475182635	51.112	0.643	50.835	50.552	51.195	-0.27643					40	16	3	0	0	0	0.024466	1	5215	5215		39.253	16.21	1	890980			49393	1315	34333	34385	54842	54842					0.0145686606357458
LTSPGYPHSY	10	Unmodified	_LTSPGYPHSY_					0	0	0		nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1;ENST00000374875.5_1_10:33552797-33623406:-|nuORF	nc|ENSG00000099250|O14786-3|NRP1	nc|ENSG00000099250|O14786-3|NRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2661743164062	2	561.266739	1120.51892	1.0952	0.00061467	-1.2974	-0.00072821	-0.20229	-0.00011354	561.2658927267258	59.787	1.0476	59.589	59.214	60.262	-0.19742					78	26	4	0	0	0	0.64538	1	6608	6608		71.877	2.2498	1	6052700			49394	2064	34334	34386	54843	54843					-0.03651437799044288
LTSPIHQDIA	10	Unmodified	_LTSPIHQDIA_					0	0	0			REV__ABCC8|p.T1130A|1|0.23|ENSG00000006071|chr11:17405505-17405505|T/C|missense_variant	REV__ABCC8|p.T1130A|1|0.23|ENSG00000006071|chr11:17405505-17405505|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2769165039062	2	547.795663	1093.57677	-0.50404	-0.00027611	0.10755	5.8914E-05	-0.39649	-0.0002172	547.7957222194639	62.17	0.58353	61.913	61.706	62.29	-0.25725					36	14	3	0	0	0	0.03519	1	6956	6956		58.23	8.6939	1	1258600	+		49395	19048	34335	34387	54844	54844					0.03372824126381602
LTSPPLLQL	9	Unmodified	_LTSPPLLQL_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.3025817871094	2	491.302593	980.590633	0.25062	0.00012313	-0.16595	-8.1533E-05	0.084664	4.1596E-05	491.3023746723937	95.339	0.94035	95.342	95.045	95.985	0.0033798					51	21	3	0	0	0	0.50848	1	12096	12096		58.782	5.8453	1	1315100	+		49396	23428	34336	34388	54845	54845					0.09956101625471092
LTSPPLLQL	9	Unmodified	_LTSPPLLQL_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	491.302593	980.590633	0.24764	0.00012166	-0.17553	-8.6236E-05	0.07211	3.5428E-05	491.3024242683746	95.458	1.0687	95.462	95.009	96.078	0.0041199	0.12682	-3.4047E-05	NaN	58.782	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1241700	+		49397	23428	34336	34388							0.09956101625471092
LTSPPLLQL	9	Unmodified	_LTSPPLLQL_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.302593	980.590633	-0.59353	-0.0002916	0.61802	0.00030363	0.024489	1.2032E-05	491.302869825625	95.372	0.65721	95.235	94.982	95.639	-0.13689	-0.1003	0.00074569	NaN	58.782	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168480	+		49398	23428	34336	34388							0.09956101625471092
LTSPPLLQL	9	Unmodified	_LTSPPLLQL_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.302593	980.590633	0.68822	0.00033812	-0.73062	-0.00035896	-0.042406	-2.0834E-05	491.30220098959535	95.369	0.69994	95.246	94.942	95.642	-0.12251	-0.088948	-0.00057949	NaN	58.782	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220910	+		49399	23428	34336	34388							0.09956101625471092
LTSPPLLQL	9	Unmodified	_LTSPPLLQL_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.302593	980.590633	-0.096564	-4.7442E-05	0.31497	0.00015474	0.2184	0.0001073	491.30265517179913	95.419	1.0022	95.267	94.925	95.927	-0.15186	-0.068153	0.00044791	NaN	58.782	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181790	+		49400	23428	34336	34388							0.09956101625471092
LTSQNTFLT	9	Unmodified	_LTSQNTFLT_					0	0	0		nc|ENSG00000054282|Q86SQ7-4|SDCCAG8;ENSG00000054282|ENST00000366541|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.771484375	2	512.769114	1023.52368	0.81595	0.00041839	3.804	0.0019506	4.6199	0.0023689	512.7708734959615	19.876	0.88161	19.643	19.374	20.256	-0.23345					34	17	4	0	0	0	0.72494	1	454	454		44.377	0.26039	1	407580			49401	1172	34337	34389	54846	54846					0.012854463436951846
LTSQRQIAE	9	Unmodified	_LTSQRQIAE_					0	0	0			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2589111328125	2	523.285463	1044.55637	-1.414	-0.00073994	0.2347	0.00012282	-1.1793	-0.00061712	523.2853019025941	24.738	0.58176	24.691	24.442	25.024	-0.047148					18	12	2	0	0	0	0.024447	1	1095	1095		32.812	2.4947	1	105320	+		49402	25151	34338	34390	54847	54847					0.03587653466570373
LTSRGLVKPL	10	Unmodified	_LTSRGLVKPL_					0	0	0			REV__ENSG00000166069|ENST00000319669|TMCO5A	REV__ENSG00000166069|ENST00000319669|TMCO5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7750244140625	2	542.347866	1082.68118	-0.30111	-0.00016331	-0.24074	-0.00013056	-0.54185	-0.00029387	542.3477553516656	72.493	0.78286	72.493	72.211	72.994	0					29	18	3	0	0	0	0.03519	1	8835	8835		39.253	3.6345	1	154600	+		49403	25965	34339	34391	54848	54848					0.14314570673764138
LTSRGVPEL	9	Unmodified	_LTSRGVPEL_					0	0	0			REV__ENSG00000177189|ENST00000379565|RPS6KA3	REV__ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2687072753906	2	486.279649	970.544745	-0.41939	-0.00020394	-0.1387	-6.7446E-05	-0.55809	-0.00027139	486.27946515331	53.806	0.57135	53.659	53.383	53.954	-0.14723					33	15	3	0	0	0	0.024427	1	5810	5810		42.396	6.7778	1	1292600	+		49404	27089	34340	34392	54849	54849					0.05829456443234449
LTSRVVKML	9	Unmodified	_LTSRVVKML_					0	0	0			REV__ENST00000588737.5_1_18:33610974-33611055:-|nuORF	REV__ENST00000588737.5_1_18:33610974-33611055:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8212280273438	2	523.823169	1045.63179	-1.0109	-0.00052951	-3.0844	-0.0016157	-4.0952	-0.0021452	523.8215921563113	48.547	1.6941	48.271	47.63	49.324	-0.27598					132	45	4	0	0	0	0.42604	1	4849	4849		64.207	0.901	1	19150000	+		49405	35655	34341	34393	54850	54850					0.11079539393313098
LTSRYQALL	9	Unmodified	_LTSRYQALL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.8092041015625	2	532.808574	1063.60259	-0.32957	-0.0001756	1.807	0.00096276	1.4774	0.00078716	532.809199622919	70.929	1.1836	70.94	70.507	71.691	0.010735					105	29	5	0	0	0	0.77768	1	8500	8500		40.778	0	1	3335500			49406	4485;14972	34342	34394	54851	54851					0.07333718368658992
LTSSPLLAW	9	Unmodified	_LTSSPLLAW_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.2785949707031	2	494.279118	986.543683	-0.29712	-0.00014686	0.36647	0.00018114	0.069348	3.4277E-05	494.27914127124546	89.584	1.012	89.457	88.955	89.967	-0.12774					44	23	3	0	0	0	0.52323	1	10963	10963		57.811	0	1	358860			49407	908	34343	34395	54852	54852					0.0498724207432133
LTSSPLLAW	9	Unmodified	_LTSSPLLAW_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	494.279118	986.543683	-1.0487	-0.00051833	0.92631	0.00045786	-0.12234	-6.047E-05	494.27948544352836	89.601	0.60027	89.439	89.173	89.774	-0.1626	-0.015354	0.00056954	NaN	57.811	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358760			49408	908	34343	34395							0.0498724207432133
LTSSQRDLA	9	Unmodified	_LTSSQRDLA_					0	0	0		ENST00000474341.5_1_2:9017150-9098660:-|nuORF;ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2	ENST00000474341.5_1_2:9017150-9098660:-|nuORF	ENST00000474341.5_1_2:9017150-9098660:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.77667236328125	2	495.764363	989.514173	-0.36259	-0.00017976	-2.6787	-0.001328	-3.0413	-0.0015078	495.7632385804208	27.86	0.23696	27.709	27.61	27.847	-0.15195					7	5	2	0	0	0	0.017396	1	1545	1545		125.81	27.232	1	190510			49409	5687	34344	34396	54853	54853					0.018996780581915118
LTSSVLKT	8	Unmodified	_LTSSVLKT_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.2019958496094	2	424.758018	847.501483	0.1999	8.491E-05	1.7826	0.00075718	1.9825	0.00084209	424.7586855021294	34.298	0.57616	34.074	33.844	34.42	-0.22412					26	14	2	0	0	0	0.027866	1	2546	2546		17.365	0	1	265070			49410	5446	34345	34397	54854	54854					0.07163266665963874
LTSTLQQDW	9	Unmodified	_LTSTLQQDW_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.271484375	2	546.272021	1090.52949	-0.55671	-0.00030411	0.51612	0.00028194	-0.040591	-2.2174E-05	546.272211462279	64.133	0.81799	63.875	63.565	64.383	-0.25824					50	20	4	0	0	0	0.048057	1	7273	7273		129.42	33.388	1	1150900			49411	1583	34346	34398	54855	54855					-0.012154551446201367
LTSTLQQDW	9	Unmodified	_LTSTLQQDW_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.272021	1090.52949	-0.16455	-8.9887E-05	0.15049	8.2211E-05	-0.014053	-7.6766E-06	546.2720053907185	64.054	0.66848	63.862	63.565	64.234	-0.19244	0.0039781	-0.00026917	NaN	129.42	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1336100			49412	1583	34346	34398							-0.012154551446201367
LTSVLISSSH	10	Unmodified	_LTSVLISSSH_					0	0	0			REV__ENST00000380629.6_1_8:26270525-26270594:+|nuORF	REV__ENST00000380629.6_1_8:26270525-26270594:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7691040039062	2	522.290214	1042.56587	-1.0762	-0.00056208	0.77061	0.00040248	-0.30557	-0.0001596	522.2903607644143	55.414	0.70786	55.512	55.257	55.965	0.098015					23	13	2	0	0	0	0.03519	1	6040	6040		44.117	13.799	1	729390	+		49413	31487	34347	34399	54856	54856					0.046294217521108294
LTSVLISSSH	10	Unmodified	_LTSVLISSSH_					0	0	0			REV__ENST00000380629.6_1_8:26270525-26270594:+|nuORF	REV__ENST00000380629.6_1_8:26270525-26270594:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7691040039062	2	522.290214	1042.56587	-0.85266	-0.00044534	1.3128	0.00068567	0.46015	0.00024033	522.290952264385	55.943	1.1007	56.041	55.409	56.51	0.097893					71	29	4	0	0	0	0.03519	1	6040	6040		44.117	13.799	1	1509900	+		49414	31487	34347	34399	54857	54857					0.046294217521108294
LTSVTKNKG	9	Unmodified	_LTSVTKNKG_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.2701721191406	2	474.279649	946.544745	-0.5704	-0.00027053	0.086519	4.1034E-05	-0.48388	-0.00022949	474.2795348836371	24.216	0.9791	24.168	24	24.98	-0.047148					55	21	3	0	0	0	0.023635	1	999	999		76.774	0	1	2249400	+		49415	22966	34348	34400	54858	54858					0.06933456443232444
LTSYFASLK	9	Unmodified	_LTSYFASLK_					0	0	0		ENST00000501011.6_1_11:82784390-82784510:+|nuORF;ENST00000526795.1_1_11:82784390-82788120:+|nuORF	ENST00000501011.6_1_11:82784390-82784510:+|nuORF	ENST00000501011.6_1_11:82784390-82784510:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.31689453125	2	515.2844	1028.55425	-0.32961	-0.00016984	-2.9781	-0.0015345	-3.3077	-0.0017044	515.282552968869	33.03	0.57348	32.799	32.462	33.036	-0.23107					38	13	4	0	0	0	0.024541	1	2276	2276		24.203	11.244	1	237200			49416	15653	34349	34401	54859	54859					0.04111224728740126
LTTAELVTV	9	Unmodified	_LTTAELVTV_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.7758483886719	2	473.776408	945.538263	0.94728	0.0004488	-1.928	-0.00091346	-0.98075	-0.00046466	473.77554856620804	98.606	0.90131	98.602	98.265	99.166	-0.0038834					39	20	3	0	0	0	0.22754	1	12504	12504		85.359	5.9085	1	663690	+		49417	20536	34350	34402	54860	54860					0.06331518491867882
LTTALIAAAL	10	Unmodified	_LTTALIAAAL_					0	0	0			REV__nc|ENSG00000121289|Q96ST8-3|CEP89	REV__nc|ENSG00000121289|Q96ST8-3|CEP89	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2801513671875	2	479.302593	956.590633	2.0662	0.00099034	-2.1924	-0.0010508	-0.12623	-6.0503E-05	479.3013732468227	59.179	0.35669	58.992	58.829	59.186	-0.18705					21	9	3	0	0	0	0.03519	1	6707	6707		87.754	5.0038	1	473330	+		49418	22589	34351	34403	54861	54861					0.1106010162544635
LTTCDDIL	8	Unmodified	_LTTCDDIL_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.24005126953125	2	447.217869	892.421184	-0.036236	-1.6205E-05	2.3549	0.0010531	2.3187	0.0010369	447.21866808799825	54.417	0.12797	54.172	54.103	54.231	-0.2453					5	3	2	0	0	0	0.027866	1	5781	5781		40.573	27.613	1	62149			49419	3254	34352	34404	54862	54862					-0.029329627194101704
LTTCLLLPA	9	Unmodified	_LTTCLLLPA_					0	0	0			REV__ENST00000560371.5_1_14:103373770-103374100:+|nuORF	REV__ENST00000560371.5_1_14:103373770-103374100:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7767333984375	2	472.777896	943.54124	0.37631	0.00017791	-3.4857	-0.0016479	-3.1093	-0.00147	472.7760629626344	79.193	2.2086	79.193	78.122	80.331	0					110	52	3	0	0	0	0.4855	1	9863	9863		60.294	0	1	1289400	+		49420	35144	34353	34405	54863	54863					0.06721070345020053
LTTCSTPLLN	10	Unmodified	_LTTCSTPLLN_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8074951171875	2	531.778625	1061.5427	-0.94297	-0.00050145	2.2385	0.0011904	1.2955	0.00068895	531.7802550466713	47.668	0.15639	47.668	47.529	47.685	0					7	4	2	0	0	0	0.03519	1	4774	4774		25.574	0	1	152640			49421	3432	34354	34406	54864	54864					0.014386596431450016
LTTDPRVR	8	Unmodified	_LTTDPRVR_					0	0	0		ENSG00000135972|ENST00000258455|MRPS9;SIK3-MRPS9|1|fusion;ENST00000472220.1_1_2:105708813-105716216:+|nuORF	ENSG00000135972|ENST00000258455|MRPS9	ENSG00000135972|ENST00000258455|MRPS9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.280029296875	2	479.277441	956.540328	1.8949	0.0009082	2.791	0.0013376	4.6859	0.0022458	479.27863663895505	59.176	1.1292	58.989	58.538	59.667	-0.18705					88	30	4	0	0	0	0.68164	1	6740	6740		68.787	2.3575	1	7579700			49422	4962	34355	34407	54865	54865					0.060319920203255606
LTTDVQIYN	9	Unmodified	_LTTDVQIYN_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8034057617188	2	533.774396	1065.53424	-0.86918	-0.00046394	1.2595	0.00067229	0.39033	0.00020835	534.2766925963906	45.369	0.40003	45.369	45.114	45.514	0					28	11	3	0	0	0	0.024374	1	4385	4385		40.778	0	1	182680	+		49423	23353	34356	34408	54866	54866					0.004094289981367183
LTTEAWQLW	9	Unmodified	_LTTEAWQLW_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.2896118164062	2	574.292756	1146.57096	-1.1128	-0.00063905	0.55847	0.00032073	-0.55429	-0.00031833	574.2929320633225	65.002	0.8512	64.799	64.539	65.39	-0.20254					60	20	4	0	0	0	0.27161	1	7448	7448		79.451	0	1	8144400	+		49424	24805	34357	34409	54867	54867					0.003537256147183143
LTTELFHSN	9	Unmodified	_LTTELFHSN_					0	0	0		ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.8114013671875	2	531.266739	1060.51892	-0.048903	-2.598E-05	3.9134	0.0020791	3.8645	0.0020531	531.2686945281704	61.398	0.35507	61.469	61.315	61.67	0.071125					14	8	2	0	0	0	0.024427	1	7024	7024		14.137	6.3326	1	116390			49425	7863	34358	34410	54868	54868					-0.008914377990549838
LTTELFLIL	9	Unmodified	_LTTELFLIL_					0	0	0			REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2	REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8074951171875	2	531.825901	1061.63725	-0.95651	-0.0005087	-1.0906	-0.00058003	-2.0472	-0.0010887	531.8252367485845	47.668	0.50663	47.668	47.464	47.971	0					22	15	3	0	0	0	0.024466	1	4774	4774		25.45	8.0852	1	767380	+		49426	28965	34359	34411	54869	54869					0.10889541456754159
LTTFVEGCTP	10	Carbamidomethyl (C)	_LTTFVEGC(Carbamidomethyl (C))TP_	LTTFVEGC(1)TP		LTTFVEGC(59)TP		0	1	0			REV__ENSG00000197763|ENST00000524230|TXNRD3;REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF	REV__ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7696533203125	2	562.768257	1123.52196	-0.048057	-2.7045E-05	2.8828	0.0016224	2.8348	0.0015953	562.7696317157354	63.001	0.56544	62.78	62.576	63.141	-0.22097					31	13	3	0	0	0	0.82838	1	7102	7102		58.782	7.5893	1	1172100	+		49427	28345;34242	34360	34412	54870	54870	369				-0.034859307365422865
LTTFVEGCTP	10	Unmodified	_LTTFVEGCTP_					0	0	0			REV__ENSG00000197763|ENST00000524230|TXNRD3;REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF	REV__ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2595825195312	2	534.257525	1066.5005	-0.99452	-0.00053133	3.6353	0.0019422	2.6408	0.0014109	534.2596013368509	66.497	1.0065	66.273	65.577	66.584	-0.22374					63	26	5	0	0	0	0.67706	1	7619	7619		68.787	0	1	6591700	+		49428	28345;34242	34360	34413	54871	54871					-0.0300931576525727
LTTFVEGCTP	10	Unmodified	_LTTFVEGCTP_					0	0	0			REV__ENSG00000197763|ENST00000524230|TXNRD3;REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF	REV__ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2593994140625	2	534.257525	1066.5005	-0.81306	-0.00043438	2.3081	0.0012331	1.495	0.00079872	534.259466027847	66.477	0.8878	66.232	65.609	66.496	-0.24517					76	23	6	0	0	0	0.42446	1	7605	7605		96.19	27.404	1	6883800	+		49429	28345;34242	34360	34413	54872	54872					-0.0300931576525727
LTTFYLLY	8	Unmodified	_LTTFYLLY_					0	0	0			REV__TM7SF2|p.A381T|1|0.24|ENSG00000149809|chr11:65115937-65115937|G/A|missense_variant	REV__TM7SF2|p.A381T|1|0.24|ENSG00000149809|chr11:65115937-65115937|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.322265625	2	517.283869	1032.55318	-0.40786	-0.00021098	-3.521	-0.0018214	-3.9288	-0.0020323	517.2817454490369	73.236	0.66277	72.959	72.626	73.288	-0.2769					23	15	2	0	0	0	0.027866	1	8592	8592		44.531	8.9128	1	168300	+		49430	37701	34361	34414	54873	54873					0.03821010359865795
LTTHKIIYT	9	Unmodified	_LTTHKIIYT_					0	0	0		nc|ENSG00000196172|Q96N22-2|ZNF681;ENSG00000196172|ENST00000402377|ZNF681	nc|ENSG00000196172|Q96N22-2|ZNF681	nc|ENSG00000196172|Q96N22-2|ZNF681	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3159790039062	2	545.318774	1088.623	-1.8246	-0.00099497	-2.3302	-0.0012707	-4.1548	-0.0022657	545.3173861251879	92.083	1.5585	91.939	91.617	93.175	-0.14356					78	36	4	0	0	0	0.97455	1	11313	11313		25.574	0.12388	1	1597200			49431	9830	34362	34415	54874	54874					0.08222889028479585
LTTIKAVVM	9	Unmodified	_LTTIKAVVM_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7845764160156	2	488.298996	974.583439	-1.2135	-0.00059256	1.3792	0.00067347	0.16569	8.0905E-05	488.2986555207683	44.574	0.30685	44.425	44.355	44.662	-0.1488					15	8	2	0	0	0	0.024466	1	4245	4245		25.45	0	1	244210			49432	2878	34363	34416	54875	54875					0.09513045753396909
LTTKSSLA	8	Unmodified	_LTTKSSLA_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.74285888671875	2	410.742368	819.470183	-0.30394	-0.00012484	1.6577	0.00068087	1.3537	0.00055603	410.74289312307116	38.119	0.85892	38.119	37.902	38.761	0					48	23	4	0	0	0	1.043	1	3189	3189		30.504	6.3009	1	2972300			49433	4717	34364	34417	54876	54876					0.05322693631853781
LTTKSSLA	8	Unmodified	_LTTKSSLA_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.7429504394531	2	410.742368	819.470183	-0.48398	-0.00019879	1.9229	0.00078981	1.4389	0.00059101	410.74300064901496	38.058	0.97532	37.975	37.706	38.682	-0.082512					54	26	4	0	0	0	0.56067	1	3148	3148		79.939	8.5613	1	2826100			49434	4717	34364	34417	54877	54877					0.05322693631853781
LTTKSSLA	8	Unmodified	_LTTKSSLA_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.7432556152344	2	410.742368	819.470183	-0.95786	-0.00039343	2.8073	0.0011531	1.8495	0.00075966	410.74335432928723	38.312	1.2578	38.339	38.023	39.281	0.027279					63	34	3	0	0	0	0.68535	1	3144	3144		68.485	8.1907	1	3547600			49435	4717	34364	34417	54878	54878					0.05322693631853781
LTTLSRFL	8	Unmodified	_LTTLSRFL_					0	0	0			REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	REV__ENST00000216068.8_1_22:39178800-39190165:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.787353515625	2	475.78711	949.559667	0.58463	0.00027816	-0.66578	-0.00031677	-0.081147	-3.8609E-05	475.78675770961814	85.794	1.9967	85.599	84.467	86.464	-0.19508					98	46	4	0	0	0	1.0239	1	10371	10371		33.516	1.5607	1	5254000	+		49436	29309	34365	34418	54879	54879					0.08286948311229025
LTTLSSQNYI	10	Unmodified	_LTTLSSQNYI_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.3028564453125	2	570.300778	1138.587	0.7405	0.00042231	2.989	0.0017047	3.7295	0.002127	570.3023893112485	99.188	1.6807	99.053	98.191	99.871	-0.13526					119	40	4	0	0	0	0.52982	1	12276	12276		84.916	8.1414	1	1167300			49437	18075	34366	34419	54880	54880					0.02325387060977846
LTTNLIKPM	9	Unmodified	_LTTNLIKPM_					0	0	0			REV__ENST00000551697.5_1_12:50524466-50529244:-|nuORF	REV__ENST00000551697.5_1_12:50524466-50529244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2760009765625	2	515.801903	1029.58925	0.12749	6.5757E-05	-3.0706	-0.0015838	-2.9431	-0.0015181	515.800256276968	88.859	0.4621	88.859	88.64	89.102	0					18	10	2	0	0	0	0.024427	1	11208	11208		34.173	12.213	1	147840	+		49438	34887	34367	34420	54881	54881					0.07564144265074901
LTTNSKLVD	9	Unmodified	_LTTNSKLVD_					0	0	0			REV__ENST00000518252.1_1_3:169511613-169514132:-|nuORF	REV__ENST00000518252.1_1_3:169511613-169514132:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.7765808105469	2	495.776939	989.539325	-0.60423	-0.00029956	-0.13639	-6.7621E-05	-0.74062	-0.00036718	495.77687344209716	27.944	1.3308	27.699	26.951	28.281	-0.24524					97	31	6	0	0	0	0.247	1	1601	1601		82.75	7.7072	1	10356000	+		49439	26597	34368	34421	54882	54882					0.0441373286076896
LTTNSKLVD	9	Unmodified	_LTTNSKLVD_					0	0	0			REV__ENST00000518252.1_1_3:169511613-169514132:-|nuORF	REV__ENST00000518252.1_1_3:169511613-169514132:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.77667236328125	2	495.776939	989.539325	-0.35871	-0.00017784	-0.37455	-0.00018569	-0.73326	-0.00036353	495.77671733946215	27.822	1.1314	27.67	27.19	28.321	-0.15196					86	27	5	0	0	0	0.17845	1	1545	1545		93.143	10.838	1	11861000	+		49440	26597	34368	34421	54883	54883					0.0441373286076896
LTTPPHTAQP	10	Unmodified	_LTTPPHTAQP_					0	0	0		ENST00000597778.5_1_19:47996282-47999001:-|nuORF	ENST00000597778.5_1_19:47996282-47999001:-|nuORF	ENST00000597778.5_1_19:47996282-47999001:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8074951171875	2	531.782556	1061.55056	-0.99641	-0.00052987	2.4251	0.0012896	1.4287	0.00075975	531.7837368342213	47.867	0.64576	47.867	47.529	48.174	0					22	14	2	0	0	0	0.03519	1	4774	4774		47.657	27.661	1	664450			49441	17455	34369	34422	54884	54884					0.022245549548870258
LTTREIWL	8	Unmodified	_LTTREIWL_					0	0	0			REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2997436523438	2	516.297842	1030.58113	-0.083051	-4.2879E-05	3.6801	0.0019	3.597	0.0018571	516.2997814554781	104.12	2.2788	104.13	102.85	105.13	0.0031357					125	61	3	0	0	0	0.6248	1	13344	13344		73.975	2.5968	1	6691800	+		49442	19699	34370	34423	54885	54885					0.06706333339957382
LTTRPVPGL	9	Unmodified	_LTTRPVPGL_					0	0	0		nc|ENSG00000152270|Q13370-2|PDE3B;ENSG00000152270|ENST00000282096|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.29248046875	2	477.292559	952.570566	0.84322	0.00040246	-1.2745	-0.00060832	-0.4313	-0.00020586	477.2918433041814	46.714	1.1544	46.714	46.343	47.497	0					97	31	4	0	0	0	0.42604	1	4664	4664		64.207	0	1	5618500			49443	6264	34371	34424	54886	54886					0.09238350685518526
LTTSAMPLLPC	11	Unmodified	_LTTSAMPLLPC_					0	0	0			REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.279052734375	2	573.798503	1145.58245	-0.32707	-0.00018767	4.4846	0.0025733	4.1576	0.0023856	573.8011029092758	77.668	0.50995	77.506	77.268	77.778	-0.16196					22	11	3	0	0	0	0.024724	1	9240	9240		20.947	0	1	301860	+		49444	32059	34372	34425	54887	54887					0.01548463322205862
LTTTLKVL	8	Unmodified	_LTTTLKVL_					0	0	0		nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6;ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF	nc|ENSG00000103037|Q8TBK2-2|SETD6	nc|ENSG00000103037|Q8TBK2-2|SETD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.76116943359375	2	444.791861	887.569169	-0.22535	-0.00010024	-1.1192	-0.00049783	-1.3446	-0.00059807	444.7895252718655	23.939	0.17374	23.759	23.607	23.78	-0.17989					5	3	2	0	0	0	0.027866	1	993	993		50.025	2.1089	1	17297			49445	2457	34373	34426	54888	54888					0.12088716596770155
LTTTYTSQ	8	Unmodified	_LTTTYTSQ_					0	0	0		SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|3|1|sense;SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|4|1|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|20|2|sense;SVA_F_dup805|chr16:56739964-56741004:-|2.04439344331472|0.1539008476170439|3.73|521.0|12|2|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|3|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|34|3|sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|21|3|sense;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|14|2|sense;chr18:49491584-49578178|122|488.25|0.0|25.54|-|2|TE_info:SVA_F,SVA_F_dup867,SVA,Retroposon,donor,-,49578178,49579001|RPL17-C18orf32,None|3;chr12:121993889-121999716|119|12.75|0.02|9.21|+|2|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993889|None,CFAP251|3;chr12:121993709-121999716|467|38.79|0.37|6.71|+|2|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993709|None,CFAP251|3;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|2|1|sense	SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|3|1|sense	SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|3|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.2789306640625	2	457.726915	913.439277	0.30306	0.00013872	3.7281	0.0017065	4.0312	0.0018452	457.7306154742424	75.083	0.16814	74.808	74.72	74.888	-0.27573					5	3	2	0	0	0	0.027866	1	8861	8861		29.15	0	1	30804			49446	316	34374	34427	54889	54889					-0.020905044730398004
LTTVEFLEL	9	Unmodified	_LTTVEFLEL_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;TMEM168|p.A366Cfs*37|1|0.18|ENSG00000146802|chr7:112783730-112783731|-/A|frameshift_variant	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.796630859375	2	532.79734	1063.58013	-1.8553	-0.0009885	1.417	0.00075496	-0.43834	-0.00023355	532.7979875934084	90.783	1.5973	90.783	90.427	92.024	0					97	37	5	0	0	0	0.31247	1	11518	11518		73.975	2.679	1	8900300			49447	5907	34375	34428	54890	54890					0.05088074180366675
LTTVFPGTNL	10	Unmodified	_LTTVFPGTNL_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8172607421875	2	531.795132	1061.57571	-0.30907	-0.00016436	0.40879	0.00021739	0.099719	5.303E-05	531.7951787992116	87.462	0.60449	87.462	87.278	87.883	0					30	14	3	0	0	0	0.03519	1	11013	11013		88.177	31.456	1	289370			49448	1397	34376	34429	54891	54891					0.04738609757487211
LTTVFPGTNL	10	Unmodified	_LTTVFPGTNL_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8170776367188	2	531.795132	1061.57571	0.65142	0.00034642	-0.97899	-0.00052062	-0.32757	-0.0001742	531.7944911123765	87.443	0.69199	87.465	87.22	87.912	0.021263					35	16	3	0	0	0	0.03519	1	10952	10952		46.457	11.305	1	348810			49449	1397	34376	34429	54892	54892					0.04738609757487211
LTTVHRVN	8	Unmodified	_LTTVHRVN_					0	0	0		ENST00000325602.5_1_3:151045734-151045782:-|nuORF	ENST00000325602.5_1_3:151045734-151045782:-|nuORF	ENST00000325602.5_1_3:151045734-151045782:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2723693847656	2	470.272158	938.529764	0.016273	7.6529E-06	0.39545	0.00018597	0.41172	0.00019362	470.2722398350845	91.233	1.3697	91.221	90.785	92.155	-0.012383					81	32	4	0	0	0	1.0009	1	11529	11529		37.159	3.6435	1	4459900			49450	12272	34377	34430	54893	54893					0.05804009365908769
LTVAAEYEGD	10	Unmodified	_LTVAAEYEGD_					0	0	0			REV__ENSG00000148677|ENST00000371697|ANKRD1	REV__ENSG00000148677|ENST00000371697|ANKRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.8342895507812	2	534.248212	1066.48187	-0.15576	-8.3214E-05	-1.0319	-0.0005513	-1.1877	-0.00063452	534.2476114337546	81.143	0.45378	80.95	80.841	81.295	-0.19333					18	10	3	0	0	0	0.03519	1	9775	9775		32.812	3.6629	1	117770	+		49451	24630	34378	34431	54894	54894					-0.04871154135480538
LTVAEVCGY	9	Unmodified	_LTVAEVCGY_					0	0	0		nc|ENSG00000185513|Q9Y468-4|L3MBTL1;nc|ENSG00000185513|Q9Y468-2|L3MBTL1;nc|ENSG00000185513|Q9Y468-1|L3MBTL1;nc|ENSG00000185513|Q9Y468|L3MBTL1;ENSG00000185513|ENST00000418998|L3MBTL1;nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	nc|ENSG00000185513|Q9Y468-4|L3MBTL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.25616455078125	2	477.733686	953.452819	-0.042656	-2.0378E-05	2.1545	0.0010293	2.1118	0.0010089	477.73381527433855	41.913	0.81882	41.682	41.08	41.899	-0.23029					38	21	3	0	0	0	0.024325	1	3691	3691		50.025	5.4935	1	244000			49452	18593	34379	34432	54895	54895					-0.02576969965457465
LTVARPANL	9	Unmodified	_LTVARPANL_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.8032531738281	2	477.790184	953.565815	0.40848	0.00019517	-0.6681	-0.00031921	-0.25962	-0.00012404	477.7897345471209	52.615	0.88946	52.615	52.049	52.938	0					38	22	3	0	0	0	0.024487	1	5626	5626		11.511	0	1	363900	+		49453	27209	34380	34433	54896	54896					0.08717466542748298
LTVDGKVFSW	10	Unmodified	_LTVDGKVFSW_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.3082885742188	2	576.308406	1150.60226	-0.19456	-0.00011212	0.43838	0.00025264	0.24382	0.00014052	576.3084976318104	73.012	0.55762	72.735	72.411	72.968	-0.2769					30	12	3	0	0	0	0.1333	1	8566	8566		129.42	35.415	1	765190			49454	4311	34381	34434	54897	54897					0.03298298648792297
LTVDGKVFSW	10	Unmodified	_LTVDGKVFSW_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.306884765625	2	576.308406	1150.60226	-0.49553	-0.00028558	0.51383	0.00029613	0.018299	1.0546E-05	576.3085139593346	73.012	0.75037	72.747	72.428	73.178	-0.26479					36	17	3	0	0	0	0.34816	1	8594	8594		104.01	24.301	1	1180700			49455	4311	34381	34434	54898	54898					0.03298298648792297
LTVDGKVFSW	10	Unmodified	_LTVDGKVFSW_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.3068237304688	2	576.308406	1150.60226	-0.70533	-0.00040649	0.4662	0.00026868	-0.23913	-0.00013781	576.3083451030004	72.746	0.71198	72.548	72.248	72.96	-0.1981					43	16	5	0	0	0	0.27169	1	8520	8520		112.11	45.145	1	1143300			49456	4311	34381	34434	54899	54899					0.03298298648792297
LTVDLLAQAR	10	Unmodified	_LTVDLLAQAR_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3263549804688	2	550.327131	1098.63971	0.081598	4.4906E-05	0.30983	0.00017051	0.39143	0.00021541	550.3276499365805	98.961	0.92738	98.957	98.596	99.523	-0.0038834					49	20	3	0	0	0	1.0236	1	12607	12607		42.864	0.46813	1	255790	+		49457	26001	34382	34435	54900	54900					0.09433389914420331
LTVELDVIID	10	Unmodified	_LTVELDVIID_					0	0	0			REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.7645874023438	2	565.32118	1128.62781	-0.032276	-1.8246E-05	0.70701	0.00039969	0.67473	0.00038144	565.3214080865483	76.093	1.135	75.834	75.557	76.692	-0.25866					41	27	3	0	0	0	0.03519	1	9150	9150		32.812	2.3088	1	281010	+		49458	20877	34383	34436	54901	54901					0.06863728380562861
LTVELDVIID	10	Unmodified	_LTVELDVIID_					0	0	0			REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.32118	1128.62781	-0.33451	-0.0001891	0.86067	0.00048656	0.52616	0.00029745	565.8227813384261	75.891	0.30217	75.903	75.788	76.09	0.011642	0.090671	0.00010808	NaN	31.53	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51304	+		49459	20877	34383	34436							0.06863728380562861
LTVELDVIID	10	Unmodified	_LTVELDVIID_					0	0	0			REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.32118	1128.62781	-0.43164	-0.00024402	0.85034	0.00048071	0.41869	0.00023669	565.3217049402153	76.071	0.83655	75.798	75.582	76.419	-0.27266	-0.013986	9.6393E-05	NaN	31.53	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210640	+		49460	20877	34383	34436							0.06863728380562861
LTVELDVIID	10	Unmodified	_LTVELDVIID_					0	0	0			REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	REV__ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	565.32118	1128.62781	0.024233	1.37E-05	0.63299	0.00035784	0.65722	0.00037154	565.3214677888566	75.889	0.45728	75.714	75.468	75.925	-0.17548	-0.098468	-0.00014935	NaN	31.53	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386660	+		49461	20877	34383	34436							0.06863728380562861
LTVFKNVNL	9	Unmodified	_LTVFKNVNL_					0	0	0		NAP1L1|p.D179N|1|0.17|ENSG00000187109|chr12:76056056-76056056|C/T|missense_variant	NAP1L1|p.D179N|1|0.17|ENSG00000187109|chr12:76056056-76056056|C/T|missense_variant	NAP1L1|p.D179N|1|0.17|ENSG00000187109|chr12:76056056-76056056|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.3050537109375	2	524.313492	1046.61243	-0.48919	-0.00025649	-0.68854	-0.00036101	-1.1777	-0.0006175	524.3127604921268	69.839	0.36613	69.839	69.588	69.954	0					15	8	2	0	0	0	0.024506	1	8408	8408		16.473	0	1	195240			49462	18022	34384	34437	54902	54902					0.09098906374038052
LTVGGLFFNE	10	Unmodified	_LTVGGLFFNE_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.7688598632812	2	548.787307	1095.56006	-1.4111	-0.00077438	-0.44822	-0.00024598	-1.8593	-0.0010204	549.2878088072636	84.082	0.5211	84.009	83.7	84.221	-0.072769					22	11	3	0	0	0	0.03519	1	10445	10445		37.812	4.9991	1	190540	+		49463	19928	34385	34438	54903	54903					0.016103232404248047
LTVGLRPK	8	Unmodified	_LTVGLRPK_					0	0	0			REV__ENST00000562946.5_1_15:42519884-42565596:-|nuORF	REV__ENST00000562946.5_1_15:42519884-42565596:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.89276123046875	2	442.28982	882.565087	-0.28149	-0.0001245	0.096187	4.2543E-05	-0.1853	-8.1958E-05	442.28969310828523	35.122	0.92928	34.906	34.712	35.641	-0.21555					45	23	3	0	0	0	0.027866	1	2648	2648		40.573	0	1	1057200	+		49464	21409	34386	34439	54904	54904					0.11910671893701874
LTVGPVLSVC	10	Unmodified	_LTVGPVLSVC_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.3008117675781	2	494.280803	986.547053	-0.25689	-0.00012697	1.4993	0.00074107	1.2424	0.00061409	494.2812387051531	96.349	0.41441	96.193	95.923	96.337	-0.15646					23	9	4	0	0	0	0.03519	1	11858	11858		49.442	8.6634	1	285570	+		49465	36725	34387	34440	54905	54905					0.05324168856668621
LTVGVSYL	8	Unmodified	_LTVGVSYL_					0	0	0			REV__ENST00000589878.5_1_19:34663659-34686187:+|nuORF	REV__ENST00000589878.5_1_19:34663659-34686187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.24609375	2	426.247286	850.48002	0.80944	0.00034502	-3.6413	-0.0015521	-2.8319	-0.0012071	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	1.0574	1	10569	10569		25.45	0	1	12732000	+		49466	35685	34388	34441	54906	54906					0.04879881637236849
LTVIEWSQV	9	Unmodified	_LTVIEWSQV_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MSMS	OPSCC_39_ClassI_Rep-1	1	537.7958984375	2	537.795132	1073.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.478	1	88.478	87.978	88.978	0								0	0	0	0.1574	1	11153	11153		79.713	15.505	1				49467	5280	34389	34442	54907	54907					0.04186609757448423
LTVIEWSQV	9	Unmodified	_LTVIEWSQV_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7955322265625	2	537.795132	1073.57571	0.138	7.4216E-05	1.2039	0.00064745	1.3419	0.00072167	537.7951569916577	88.45	1.5227	88.423	88.05	89.573	-0.027664					83	35	5	0	0	0	0.19099	1	11104	11104		90.37	30.252	1	1565600			49468	5280	34389	34442	54908	54908					0.04186609757448423
LTVIEWSQV	9	Unmodified	_LTVIEWSQV_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7955932617188	2	537.795132	1073.57571	-0.14268	-7.6734E-05	1.297	0.00069754	1.1544	0.00062081	537.7952221023786	88.486	1.5275	88.504	88.069	89.596	0.018555					88	35	6	0	0	0	0.12914	2	11090	11066;11090		104.06	36.563	1	1466700			49469	5280	34389	34442	54909;54910	54910					0.04186609757448423
LTVIEWSQV	9	Unmodified	_LTVIEWSQV_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.795132	1073.57571	-0.64374	-0.0003462	2.5032	0.0013462	1.8594	0.00099999	537.7956439661476	88.383	0.89755	88.213	87.817	88.714	-0.17053	-0.14587	0.0010893	NaN	104.06	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140530			49470	5280	34389	34442							0.04186609757448423
LTVIEWSQV	9	Unmodified	_LTVIEWSQV_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.795132	1073.57571	-0.24095	-0.00012958	2.0182	0.0010854	1.7772	0.00095579	537.7954701363208	88.426	0.65363	88.295	87.917	88.57	-0.13135	-0.063878	0.00056761	NaN	104.06	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110440			49471	5280	34389	34442							0.04186609757448423
LTVIILTFK	9	Unmodified	_LTVIILTFK_					0	0	0		ENST00000467542.5_1_13:20411687-20425669:-|nuORF;nc|ENSG00000132950|Q9UJ78-1|ZMYM5	ENST00000467542.5_1_13:20411687-20425669:-|nuORF	ENST00000467542.5_1_13:20411687-20425669:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.307373046875	2	524.344261	1046.67397	-0.16254	-8.5228E-05	-2.8966	-0.0015188	-3.0591	-0.001604	524.3429949870207	75.835	0.15724	75.576	75.477	75.634	-0.25866					5	3	2	0	0	0	0.024487	1	8993	8993		40.573	16.37	1	41297			49472	14843	34390	34443	54911	54911					0.15249838073305
LTVKFLTK	8	Unmodified	_LTVKFLTK_					0	0	0		nc|ENSG00000103710|Q9NYN1-2|RASL12;ENSG00000103710|ENST00000220062|RASL12	nc|ENSG00000103710|Q9NYN1-2|RASL12	nc|ENSG00000103710|Q9NYN1-2|RASL12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.3073425292969	2	475.307678	948.600803	-0.57169	-0.00027173	0.34993	0.00016632	-0.22176	-0.0001054	475.30767100268724	42.843	0.90134	42.617	42.374	43.275	-0.22597					60	23	4	0	0	0	0.5947	1	3888	3888		76.774	2.5191	1	1817800			49473	2524	34391	34444	54912	54912					0.12444709350711491
LTVLEHDMTL	10	Unmodified	_LTVLEHDMTL_					0	0	0			REV__ENST00000334116.7_2_19:37042871-37064163:-|nuORF	REV__ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	586.303955078125	2	586.305007	1170.59546	-1.934	-0.0011339	1.5193	0.00089076	-0.41473	-0.00024316	586.3042533236658	75.83	1.0457	75.83	75.551	76.597	0					83	26	4	0	0	0	0.96965	1	9355	9355		49.442	1.482	1	2696200	+		49474	27822	34392	34445	54913	54913					0.01698617705937977
LTVLLAWL	8	Unmodified	_LTVLLAWL_					0	0	0		nc|ENSG00000169347|P55259-2|GP2;nc|ENSG00000169347|P55259-4|GP2;ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2	nc|ENSG00000169347|P55259-2|GP2	nc|ENSG00000169347|P55259-2|GP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2793273925781	2	464.796946	927.57934	-0.73278	-0.0003406	-3.672	-0.0017068	-4.4048	-0.0020473	464.79495594512684	50.124	0.38995	50.124	49.986	50.376	0					13	11	2	0	0	0	0.027866	1	5267	5267		28.254	0	1	122290			49475	18500	34393	34446	54914	54914					0.11265324321982462
LTVLMLLL	8	Unmodified	_LTVLMLLL_					0	0	0			REV__nc|ENSG00000158714|Q9P0V8-2|SLAMF8	REV__nc|ENSG00000158714|Q9P0V8-2|SLAMF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.21990966796875	2	458.301007	914.587462	-0.23197	-0.00010631	4.344	0.0019908	4.112	0.0018845	458.3028944244502	40.575	0.50513	40.35	40.15	40.655	-0.225					23	13	2	0	0	0	0.027866	1	3495	3495		50.025	0	1	499670	+		49476	25214	34394	34447	54915	54915					0.12675135247116032
LTVLPRLVF	9	Unmodified	_LTVLPRLVF_					0	0	0		ENST00000535296.5_1_11:62623694-62639117:+|nuORF	ENST00000535296.5_1_11:62623694-62639117:+|nuORF	ENST00000535296.5_1_11:62623694-62639117:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.779541015625	2	529.342052	1056.66955	-0.33559	-0.00017764	0.27373	0.00014489	-0.061864	-3.2747E-05	529.341848652617	87.259	2.1307	87.259	85.956	88.086	0					98	50	3	0	0	0	0.024436	1	10808	10808		38.806	8.3025	1	255800			49477	16347	34395	34448	54916	54916					0.14348373650409485
LTVLSQAGDQ	10	Unmodified	_LTVLSQAGDQ_					0	0	0			REV__ENSG00000167311|ENST00000397068|ART5	REV__ENSG00000167311|ENST00000397068|ART5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2697143554688	2	516.272021	1030.52949	-0.38506	-0.0001988	-0.31079	-0.00016045	-0.69585	-0.00035925	516.2719731418506	49.141	0.64672	48.988	48.682	49.328	-0.15277					73	17	6	0	0	0	0.64538	1	5053	5053		71.877	3.0906	1	36581000	+		49478	26129	34396	34449	54917	54917					0.015445448553691676
LTVLTFRLN	9	Unmodified	_LTVLTFRLN_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3;TMTC3|p.P277Lfs*5|1|0.27|ENSG00000139324|chr12:88166361-88166361|C/-|frameshift_variant	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7905883789062	2	538.826766	1075.63898	-0.57093	-0.00030763	3.9178	0.002111	3.3469	0.0018034	538.828740380324	59.889	1.7223	59.64	58.495	60.217	-0.24842					69	43	2	0	0	0	0.024405	1	6505	6505		35.618	0	1	195840			49479	5325	34397	34450	54918	54918					0.10418595265377917
LTVLVHKR	8	Unmodified	_LTVLVHKR_					0	0	0			REV__ENST00000318443.9_1_15:74005955-74006183:+|nuORF	REV__ENST00000318443.9_1_15:74005955-74006183:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.7904052734375	2	483.316369	964.618185	0.14441	6.9794E-05	-0.3985	-0.0001926	-0.25409	-0.00012281	483.3161835838774	36.627	0.66703	36.422	36.056	36.723	-0.20518					29	16	2	0	0	0	0.027866	1	2916	2916		17.365	5.8539	1	324270	+		49480	30307	34398	34451	54919	54919					0.13446049676360872
LTVMNWNTS	9	Unmodified	_LTVMNWNTS_					0	0	0			REV__ENST00000486082.5_1_1:27657613-27661179:+|nuORF	REV__ENST00000486082.5_1_1:27657613-27661179:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7928466796875	2	533.255317	1064.49608	-1.2637	-0.00067389	-1.0729	-0.00057213	-2.3366	-0.001246	533.2548637363233	44.151	1.4573	43.932	43.211	44.668	-0.21938					68	39	2	0	0	0	0.024209	1	4149	4149		39.253	0	1	447920	+		49481	27862	34399	34452	54920	54920					-0.033587801881594714
LTVNKWLL	8	Unmodified	_LTVNKWLL_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7719421386719	2	493.805303	985.596052	-0.68805	-0.00033976	3.1499	0.0015555	2.4619	0.0012157	493.80634932901995	33.09	0.15079	33.097	32.967	33.117	0.0066261					5	3	2	0	0	0	0.027866	1	2335	2335		40.573	0	1	67752	+		49482	21664	34400	34453	54921	54921					0.10267825207949954
LTVNLGLLR	9	Unmodified	_LTVNLGLLR_					0	0	0		ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8052978515625	2	499.821484	997.628415	-0.030796	-1.5393E-05	-0.20828	-0.0001041	-0.23908	-0.0001195	499.8212060279034	42.227	0.51029	42.253	42.056	42.566	0.026016					17	14	2	0	0	0	0.024319	1	3830	3830		39.253	0	1	208450			49483	14628	34401	34454	54922	54922					0.1295061261093906
LTVPRHPPL	9	Unmodified	_LTVPRHPPL_					0	0	0			REV__ENST00000574857.1_1_17:2275854-2276226:+|nuORF	REV__ENST00000574857.1_1_17:2275854-2276226:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2716064453125	2	515.313826	1028.6131	-0.4382	-0.00022581	-0.3185	-0.00016413	-0.7567	-0.00038994	515.313362003481	49.11	0.43667	48.83	48.575	49.011	-0.27977					24	11	3	0	0	0	0.024487	1	4927	4927		31.955	0	1	328510	+		49484	35452	34402	34455	54923	54923					0.09993745813744681
LTVQLLTVPG	10	Unmodified	_LTVQLLTVPG_					0	0	0		ENSG00000134917|ENST00000257359|ADAMTS8;ENST00000531752.1_1_11:130275455-130281537:-|nuORF	ENSG00000134917|ENST00000257359|ADAMTS8	ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.81982421875	2	520.82115	1039.62775	-0.29122	-0.00015167	0.81045	0.0004221	0.51923	0.00027043	520.8214048946902	100.28	0.50852	100.28	100.07	100.57	0					26	11	4	0	0	0	0.50517	1	12826	12826		87.696	12.653	1	401950			49485	4844	34403	34456	54924	54924					0.10951773171245804
LTVRLAAR	8	Unmodified	_LTVRLAAR_					0	0	0		ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2814025878906	2	450.292894	898.571235	1.1469	0.00051645	-1.918	-0.00086367	-0.77108	-0.00034721	450.2919114161969	51.451	0.27547	51.267	51.099	51.374	-0.18405					10	6	2	0	0	0	0.027866	1	5256	5256		18.324	0	1	74924			49486	9649	34404	34457	54925	54925					0.11789190125216464
LTVRNLPQY	9	Unmodified	_LTVRNLPQY_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.314453125	2	552.314023	1102.61349	0.041155	2.273E-05	-0.060682	-3.3516E-05	-0.019528	-1.0785E-05	552.3138159314664	53.225	0.67864	53.098	52.792	53.471	-0.12705					39	17	3	0	0	0	0.086035	2	5568	5568;5581		115.49	35.781	1	3021300			49487	5939	34405	34458	54926;54927	54926					0.06629120742968553
LTVRNLPQY	9	Unmodified	_LTVRNLPQY_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.3145141601562	2	552.314023	1102.61349	0.060025	3.3153E-05	-0.054602	-3.0157E-05	0.0054232	2.9953E-06	552.3138576640767	53.442	0.66373	53.183	52.882	53.546	-0.25838					40	17	3	0	0	0	0.043667	2	5597	5587;5597		131.03	40.255	1	3557900			49488	5939	34405	34458	54928;54929	54929					0.06629120742968553
LTVRNLPQY	9	Unmodified	_LTVRNLPQY_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.31298828125	2	552.314023	1102.61349	-0.1811	-0.00010002	0.076569	4.229E-05	-0.10453	-5.7731E-05	552.3139343451851	53.324	0.66562	53.134	52.831	53.496	-0.18982					39	17	3	0	0	0	0.041068	2	5579	5569;5579		132.76	53.045	1	3367100			49489	5939	34405	34458	54930;54931	54931					0.06629120742968553
LTVSKIEDG	9	Unmodified	_LTVSKIEDG_					0	0	0		SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant;ENSG00000158352|ENST00000376020|SHROOM4	SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2884216308594	2	481.263665	960.512776	0.56272	0.00027082	0.13248	6.3758E-05	0.6952	0.00033457	481.2638350006549	65.562	0.50688	65.562	65.292	65.799	0					34	13	3	0	0	0	0.024374	1	7805	7805		40.778	0	1	588290			49490	6664	34406	34459	54932	54932					0.030940439694290944
LTVSLYNK	8	Unmodified	_LTVSLYNK_					0	0	0		sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	sp|P25939|TRM1_EBVB9Tripartiteterminasesubunit1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM1PE=3SV=2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.74566650390625	2	469.271293	936.528032	0.23341	0.00010953	1.6744	0.00078575	1.9078	0.00089528	469.27203903026276	19.911	0.24523	19.75	19.578	19.823	-0.16079					8	4	2	0	0	0	0.027866	1	464	464		31.955	6.5047	1	19923			49491	37952	34407	34460	54933	54933					0.05722955557280329
LTVSYHLR	8	Unmodified	_LTVSYHLR_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.295166015625	2	494.782359	987.550165	-0.83444	-0.00041287	2.0338	0.0010063	1.1993	0.00059341	494.78332019349847	53.398	0.54266	53.251	53.06	53.602	-0.14723					29	14	3	0	0	0	0.027866	1	5733	5733		17.365	0	1	373460	+		49492	22910	34408	34461	54934	54934					0.0558918002569726
LTVTFLGG	8	Unmodified	_LTVTFLGG_					0	0	0			REV__nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	REV__nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.232666015625	2	404.234179	806.453805	-0.10547	-4.2633E-05	-3.6241	-0.001465	-3.7296	-0.0015076	404.23247999449234	84.477	3.3436	84.404	82.163	85.507	-0.072769					158	78	4	0	0	0	1.0133	1	10590	10590		35.201	0	1	13931000	+		49493	24294	34409	34462	54935	54935					0.04283612465758324
LTVTRNFVL	9	Unmodified	_LTVTRNFVL_					0	0	0			REV__nc|ENSG00000172053|P47897-2|QARS1	REV__nc|ENSG00000172053|P47897-2|QARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8170776367188	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.39228	1	10664	10664		66.429	13.493	1	4521600	+		49494	26630	34410	34463	54936	54936					0.09498308748334239
LTVTSLMARG	10	Unmodified	_LTVTSLMARG_					0	0	0		ENSG00000123576|ENST00000372588|ESX1	ENSG00000123576|ENST00000372588|ESX1	ENSG00000123576|ENST00000372588|ESX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2378540039062	2	524.794609	1047.57467	-0.90948	-0.00047729	-3.6775	-0.0019299	-4.587	-0.0024072	524.7925800865925	44.433	0.42204	44.188	43.904	44.326	-0.2444					18	11	2	0	0	0	0.03519	1	4151	4151		42.864	5.0528	1	499930			49495	3988	34411	34464	54937	54937					0.05278072116925614
LTVVGIFY	8	Unmodified	_LTVVGIFY_					0	0	0		ENSG00000159961|ENST00000641141|OR3A3;nc|ENSG00000159961|P47888|OR3A3;nc|ENSG00000180068|P47883|OR3A4P	ENSG00000159961|ENST00000641141|OR3A3;nc|ENSG00000180068|P47883|OR3A4P	ENSG00000159961|ENST00000641141|OR3A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.27838134765625	2	456.265479	910.516405	1.0748	0.00049039	0.57836	0.00026389	1.6532	0.00075428	456.26559686493675	18.182	0.24489	18.026	17.854	18.099	-0.15637					6	4	2	0	0	0	0.027866	1	277	277		13.775	0	1	14841			49496	6776;18557	34412	34465	54938	54938					0.05756758533948414
LTVVKLHS	8	Unmodified	_LTVVKLHS_					0	0	0			REV__OR13G1|p.T243K|1|0.52|ENSG00000197437|chr1:247672314-247672314|G/T|missense_variant	REV__OR13G1|p.T243K|1|0.52|ENSG00000197437|chr1:247672314-247672314|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.78369140625	2	448.781828	895.549102	0.072954	3.274E-05	4.3217	0.0019395	4.3946	0.0019722	448.78372873485154	100.94	0.64117	100.95	100.7	101.34	0.0090332					30	14	3	0	0	0	0.99042	1	12904	12904		38.806	0	1	344100	+		49497	37310	34413	34466	54939	54939					0.09714965656814911
LTVYFYTT	8	Unmodified	_LTVYFYTT_					0	0	0			REV__ENST00000261531.11_1_14:78184134-78184290:-|nuORF	REV__ENST00000261531.11_1_14:78184134-78184290:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2909240722656	2	504.257851	1006.50115	-0.13771	-6.9443E-05	-1.6145	-0.00081412	-1.7522	-0.00088356	504.25654504366906	54.782	0.60785	54.551	54.213	54.821	-0.23087					27	16	3	0	0	0	0.027866	1	5868	5868		17.365	0	1	252060	+		49498	29627	34414	34467	54940	54940					-0.0018415305390817593
LTWLLLPSP	9	Unmodified	_LTWLLLPSP_					0	0	0			REV__ENSG00000198715|ENST00000362007|GLMP	REV__ENSG00000198715|ENST00000362007|GLMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.766357421875	2	520.312961	1038.61137	-1.1344	-0.00059027	-1.8114	-0.00094251	-2.9459	-0.0015328	520.8135672331475	47.529	0.48155	47.588	47.319	47.8	0.059097					22	14	2	0	0	0	0.024354	1	4702	4702		23.042	0	1	243010	+		49499	28453	34415	34468	54941	54941					0.09360692005134297
LTWMLNRLY	9	Oxidation (M)	_LTWM(Oxidation (M))LNRLY_		LTWM(1)LNRLY		LTWM(94)LNRLY	0	0	1			REV__ENST00000419546.1_1_7:88194857-88195094:-|nuORF	REV__ENST00000419546.1_1_7:88194857-88195094:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	613.2908935546875	2	613.323534	1224.63251	-1.0804	-0.00066266	1.2165	0.00074612	0.13607	8.3458E-05	613.3225993075611	61.042	0.23159	60.788	60.66	60.891	-0.25373					8	5	3	0	0	0	0.023181	1	6803	6803		94.006	11.701	1	139970	+		49500	32144	34416	34469	54942	54942		890			0.029183340423514892
LTWQLQPVE	9	Unmodified	_LTWQLQPVE_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.3002319335938	2	557.300581	1112.58661	-0.089119	-4.9666E-05	-0.58402	-0.00032547	-0.67313	-0.00037514	557.30012876976	68.366	1.044	68.073	67.781	68.825	-0.29267					71	26	4	0	0	0	0.57016	1	8175	8175		54.722	5.1863	1	3583600			49501	858	34417	34470	54943	54943					0.03482012131757983
LTWRVPPD	8	Unmodified	_LTWRVPPD_					0	0	0			REV__ENST00000556928.5_1_15:94433993-94442550:-|nuORF	REV__ENST00000556928.5_1_15:94433993-94442550:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.26214599609375	2	492.269084	982.523616	0.69578	0.00034251	-0.77259	-0.00038032	-0.076812	-3.7812E-05	492.2685393737861	71.387	0.77815	71.181	70.921	71.699	-0.20613					30	18	2	0	0	0	0.027866	1	8315	8315		23.042	0	1	213230	+		49502	35053	34418	34471	54944	54944					0.03165491134370768
LTWTITPL	8	Unmodified	_LTWTITPL_					0	0	0			REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7738037109375	2	472.776211	943.537869	0.35178	0.00016631	-3.5307	-0.0016692	-3.1789	-0.0015029	472.7740324318148	55.862	0.62773	55.706	55.404	56.031	-0.15602					40	16	3	0	0	0	0.93274	1	6159	6159		47.916	0	1	2789100	+		49503	19710	34419	34472	54945	54945					0.06384143562661393
LTWTNTTPEY	10	Unmodified	_LTWTNTTPEY_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.2905883789062	2	613.290411	1224.56627	-1.2832	-0.00078698	0.70713	0.00043367	-0.57608	-0.0003533	613.2908696486643	60.831	2.3089	60.654	60.076	62.385	-0.1761					192	57	5	0	0	0	0.47897	1	6784	6784		90.601	8.3603	1	55768000	+		49504	22486	34420	34473	54946	54946					-0.03703203318718806
LTWVLLFW	8	Unmodified	_LTWVLLFW_					0	0	0		ENST00000258145.7_1_12:65122776-65122830:-|nuORF	ENST00000258145.7_1_12:65122776-65122830:-|nuORF	ENST00000258145.7_1_12:65122776-65122830:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7925415039062	2	539.310221	1076.60589	-1.0078	-0.00054354	4.0197	0.0021678	3.0118	0.0016243	539.312448687151	77.733	0.61877	77.748	77.536	78.155	0.015907					31	14	3	0	0	0	0.027866	1	9575	9575		13.775	0	1	467720			49505	11414	34421	34474	54947	54947					0.0706501321333235
LTWVLSVK	8	Unmodified	_LTWVLSVK_					0	0	0		ENST00000406641.5_1_7:50772961-50823704:-|nuORF;ENST00000403097.5_1_7:50778658-50860317:-|nuORF	ENST00000406641.5_1_7:50772961-50823704:-|nuORF	ENST00000406641.5_1_7:50772961-50823704:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2667541503906	2	473.292028	944.569503	0.43317	0.00020502	2.0694	0.00097943	2.5026	0.0011845	473.292610113486	60.979	0.44877	60.979	60.768	61.216	0					19	11	2	0	0	0	0.027866	1	7065	7065		15.642	0	1	201030			49506	13693	34422	34475	54948	54948					0.09500136316614771
LTYAAETYN	9	Unmodified	_LTYAAETYN_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENSG00000147459|ENST00000276440|DOCK5;REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2978515625	2	523.245472	1044.47639	-0.28814	-0.00015077	1.8284	0.00095668	1.5402	0.00080591	523.2469315514663	86.946	0.16747	86.946	86.816	86.984	0					5	3	2	0	0	0	0.024487	1	10922	10922		31.955	2.8053	1	22132	+		49507	23460;36781;24556	34423	34476	54949	54949					-0.044068329272931805
LTYAELELI	9	Unmodified	_LTYAELELI_					0	0	0		ENSG00000165633|ENST00000332853|VSTM4	ENSG00000165633|ENST00000332853|VSTM4	ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.79736328125	2	532.79734	1063.58013	0.037336	1.9893E-05	-0.43132	-0.00022981	-0.39399	-0.00020991	532.7969258996008	90.805	2.0146	90.666	90.278	92.293	-0.13893					103	47	5	0	0	0	0.17455	1	11131	11131		94.006	8.6469	1	4409700			49508	7443	34424	34477	54950	54950					0.05088074180366675
LTYEFNNR	8	Unmodified	_LTYEFNNR_					0	0	0			REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.3154296875	2	528.759081	1055.50361	0.63093	0.00033361	-2.8669	-0.0015159	-2.236	-0.0011823	528.7552900790232	97.515	0.63243	97.378	97.149	97.781	-0.1367					19	13	2	0	0	0	0.027866	1	12077	12077		30.504	0	1	41010	+		49509	36678	34425	34478	54951	54951					-0.021923045962239485
LTYEMIQID	9	Unmodified	_LTYEMIQID_					0	0	0			REV__ENSG00000078725|ENST00000265922|BRINP1	REV__ENSG00000078725|ENST00000265922|BRINP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.2763061523438	2	563.278457	1124.54236	-0.073824	-4.1583E-05	-3.5217	-0.0019837	-3.5956	-0.0020253	563.2764708422711	81.861	3.0713	81.73	81.298	84.369	-0.13075					222	72	4	0	0	0	0.34489	1	10267	10267		69.628	5.4204	1	21913000	+		49510	20618	34426	34479	54952	54952					-0.014927600767350668
LTYEMIQID	9	Unmodified	_LTYEMIQID_					0	0	0			REV__ENSG00000078725|ENST00000265922|BRINP1	REV__ENSG00000078725|ENST00000265922|BRINP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.2767333984375	2	563.278457	1124.54236	-0.90855	-0.00051177	-2.7712	-0.001561	-3.6797	-0.0020727	563.2768894849044	81.695	3.3298	81.721	81.25	84.579	0.025711					226	78	4	0	0	0	0.15366	2	10158	10158;10184		98.629	16.389	1	23997000	+		49511	20618	34426	34479	54953;54954	54953					-0.014927600767350668
LTYEMIQID	9	Unmodified	_LTYEMIQID_					0	0	0			REV__ENSG00000078725|ENST00000265922|BRINP1	REV__ENSG00000078725|ENST00000265922|BRINP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.2767333984375	2	563.278457	1124.54236	0.36435	0.00020523	-3.7763	-0.0021271	-3.4119	-0.0019219	563.2763621872085	81.853	2.3968	81.624	81.022	83.418	-0.2289					176	55	5	0	0	0	0.42604	1	9886	9886		64.207	5.9773	1	5689700	+		49512	20618	34426	34479	54955	54955					-0.014927600767350668
LTYENVERW	9	Unmodified	_LTYENVERW_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.2987060546875	2	605.29857	1208.58259	-0.95914	-0.00058056	1.5974	0.00096689	0.63825	0.00038633	605.2994017207335	57.911	0.50538	57.733	57.554	58.06	-0.17775					27	12	3	0	0	0	0.10464	1	6347	6347		109.48	34.435	1	4309500			49513	2528	34427	34480	54956	54956					-0.01336077361952448
LTYENVERW	9	Unmodified	_LTYENVERW_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.296875	2	605.29857	1208.58259	-0.35865	-0.00021709	-1.1874	-0.00071873	-1.5461	-0.00093582	605.2977023726737	57.846	0.50227	57.656	57.443	57.946	-0.19017					33	12	4	0	0	0	0.079716	2	6341	6331;6341		117.81	40.493	1	7421700			49514	2528	34427	34480	54957;54958	54958					-0.01336077361952448
LTYENVERW	9	Unmodified	_LTYENVERW_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.299560546875	2	605.29857	1208.58259	-0.36667	-0.00022194	0.60471	0.00036603	0.23804	0.00014409	605.2986714753354	57.98	0.42606	57.747	57.583	58.009	-0.23363					26	10	4	0	0	0	0.28047	2	6354	6341;6354		78.264	21.687	1	3889300			49515	2528	34427	34480	54959;54960	54960					-0.01336077361952448
LTYGVHPVEV	10	Unmodified	_LTYGVHPVEV_					0	0	0		ENSG00000184544|ENST00000571134|DHRS7C;nc|ENSG00000184544|A6NNS2|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.30029296875	2	557.300581	1112.58661	-0.089119	-4.9666E-05	-0.58402	-0.00032547	-0.67313	-0.00037514	557.30012876976	68.366	1.044	68.073	67.781	68.825	-0.29267					71	26	4	0	0	0	0.85955	1	8186	8186		56.721	1.2168	1	3583600			49516	9348	34428	34481	54961	54961					0.03482012131757983
LTYGVHPVEV	10	Unmodified	_LTYGVHPVEV_					0	0	0		ENSG00000184544|ENST00000571134|DHRS7C;nc|ENSG00000184544|A6NNS2|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	ENSG00000184544|ENST00000571134|DHRS7C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.2994384765625	2	557.300581	1112.58661	0.53121	0.00029605	-1.232	-0.00068658	-0.70075	-0.00039053	557.2997142401326	68.091	1.0178	68.11	67.781	68.799	0.018913					76	26	4	0	0	0	0.60198	1	8067	8067		76.774	3.8949	1	3473000			49517	9348	34428	34481	54962	54962					0.03482012131757983
LTYICPWENA	10	Unmodified	_LTYICPWENA_					0	0	0		ENSG00000277399|ENST00000616987|GPR179;nc|ENSG00000277399|Q6PRD1|GPR179;GPR179|p.R1096Vfs*37|1|0.25|ENSG00000277399|chr17:38330283-38330283|G/-|frameshift_variant	ENSG00000277399|ENST00000616987|GPR179	ENSG00000277399|ENST00000616987|GPR179	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.2887573242188	2	605.284074	1208.5536	-1.1989	-0.00072566	4.0429	0.0024471	2.844	0.0017214	605.2863716977504	57.733	0.79837	57.555	57.06	57.859	-0.17775					62	20	4	0	0	0	0.91678	1	6336	6336		52.937	6.9847	1	3666200			49518	11055	34429	34482	54963	54963					-0.042339379825989454
LTYKHIYMF	9	Oxidation (M)	_LTYKHIYM(Oxidation (M))F_		LTYKHIYM(1)F		LTYKHIYM(85)F	0	0	1			REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF	REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.2120666503906	3	411.210849	1230.61072	0.14351	5.9014E-05	2.8224	0.0011606	2.9659	0.0012196	411.2119864889532	46.723	0.94661	46.626	46.331	47.278	-0.096649					73	25	4	0	0	0	0.23085	1	4530	4530		84.916	10.751	1	7305800	+		49519	31756	34430	34483	54964	54964		884			0.0046352929375643726
LTYKHIYMF	9	Oxidation (M)	_LTYKHIYM(Oxidation (M))F_		LTYKHIYM(1)F		LTYKHIYM(66)F	0	0	1			REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF	REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.2122802734375	3	411.210849	1230.61072	0.27582	0.00011342	2.7597	0.0011348	3.0355	0.0012483	411.2119483299425	47.124	0.93721	46.855	46.561	47.498	-0.26939					75	25	4	0	0	0	0.39228	1	4583	4583		66.429	13.34	1	7981700	+		49520	31756	34430	34483	54965	54965		884			0.0046352929375643726
LTYKHIYMF	9	Oxidation (M)	_LTYKHIYM(Oxidation (M))F_		LTYKHIYM(1)F		LTYKHIYM(74)F	0	0	1			REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF	REV__ENST00000396981.6_1_17:4175487-4175577:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.2121276855469	3	411.210849	1230.61072	-0.29807	-0.00012257	3.3033	0.0013584	3.0052	0.0012358	411.2121952543009	46.87	0.8516	46.676	46.38	47.232	-0.19387					70	23	4	0	0	0	0.31037	1	4541	4541		74.255	17.623	1	7544900	+		49521	31756	34430	34483	54966	54966		884			0.0046352929375643726
LTYKQKRK	8	Unmodified	_LTYKQKRK_					0	0	0		ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7899169921875	2	532.832383	1063.65021	0.76626	0.00040829	4.345	0.0023152	5.1113	0.0027234	532.8337326885144	64.029	0.43084	64.029	63.88	64.311	0					16	11	2	0	0	0	0.027866	1	7500	7500		33.516	12.569	1	164820			49522	8894	34431	34484	54967	54967					0.1209341735950602
LTYKQKRKKHF	11	Unmodified	_LTYKQKRKKHF_					0	0	0		ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7675476074219	3	492.964777	1475.8725	-0.21734	-0.00010714	-1.204	-0.00059352	-1.4213	-0.00070066	492.96407874699224	52.975	0.395	52.848	52.632	53.027	-0.12705					21	9	3	0	0	0	0.024856	1	5515	5515		5.6988	0	1	512550			49523	8894	34432	34485	54968	54968					0.1536007170486755
LTYLQRAL	8	Unmodified	_LTYLQRAL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2925109863281	2	489.292559	976.570566	-0.49524	-0.00024232	0.77183	0.00037765	0.27659	0.00013533	489.29282211853024	66.897	1.2227	66.921	66.601	67.824	0.023911					51	29	2	0	0	0	0.99042	1	7883	7883		38.806	0.99462	1	3202900			49524	2864	34433	34486	54969	54969					0.0813435068552053
LTYMRHFPS	9	Unmodified	_LTYMRHFPS_					0	0	0			REV__ENSG00000225968|ENST00000424383|ELFN1	REV__ENSG00000225968|ENST00000424383|ELFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8134155273438	2	576.286951	1150.55935	-0.53651	-0.00030918	3.4181	0.0019698	2.8815	0.0016606	576.288893541769	47.736	0.9889	47.46	47.268	48.257	-0.27598					53	26	3	0	0	0	0.024205	1	4691	4691		44.117	8.4985	1	1457300	+		49525	28869	34434	34487	54970	54970					-0.009907946802513834
LTYPVALSR	9	Unmodified	_LTYPVALSR_					0	0	0			REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.3206481933594	2	510.297842	1018.58113	-0.47973	-0.00024481	0.35245	0.00017985	-0.12729	-6.4954E-05	510.29751496884745	68.979	0.48602	68.979	68.68	69.166	0					18	12	2	0	0	0	0.024506	1	8311	8311		16.473	0	1	628720	+		49526	32521	34435	34488	54971	54971					0.07258333339950696
LTYRALTI	8	Unmodified	_LTYRALTI_					0	0	0			REV__ENST00000534532.6_1_11:134094237-134094411:-|nuORF	REV__ENST00000534532.6_1_11:134094237-134094411:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.7870178222656	2	475.78711	949.559667	0.58463	0.00027816	-0.66578	-0.00031677	-0.081147	-3.8609E-05	475.78675770961814	85.794	1.9967	85.599	84.467	86.464	-0.19508					98	46	4	0	0	0	0.96769	1	10430	10430		42.396	1.618	1	5254000	+		49527	34643	34436	34489	54972	54972					0.08286948311229025
LTYSFESPF	9	Unmodified	_LTYSFESPF_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3003540039062	2	545.758215	1089.50188	-1.1428	-0.00062367	-2.5618	-0.0013981	-3.7045	-0.0020218	545.7567392984977	50.289	0.62239	50.289	50.052	50.675	0					52	18	4	0	0	0	0.024412	1	5259	5259		31.955	1.4512	1	1412400	+		49528	21825	34437	34490	54973	54973					-0.03929358404866434
LTYSYGRSI	9	Unmodified	_LTYSYGRSI_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2774658203125	2	530.277106	1058.53966	-0.6998	-0.00037109	0.84859	0.00044999	0.14879	7.8901E-05	530.2774321977151	57.615	2.1957	57.71	57.165	59.361	0.095306					151	59	4	0	0	0	0.42604	1	6441	6441		64.207	4.089	1	55694000	+		49529	22428	34438	34491	54974	54974					0.012731525806202626
LTYTAREII	9	Unmodified	_LTYTAREII_					0	0	0			REV__ENST00000481096.6_1_X:51808851-51809606:-|nuORF	REV__ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3086547851562	2	540.308406	1078.60226	-0.30434	-0.00016444	0.026257	1.4187E-05	-0.27808	-0.00015025	540.3083912995808	72.712	1.2141	72.447	72.042	73.256	-0.26479					101	28	5	0	0	0	0.2508	1	8573	8573		82.241	2.5279	1	9780500	+		49530	24965	34439	34492	54975	54975					0.0661029864882039
LTYTMILNL	9	Unmodified	_LTYTMILNL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3034057617188	2	541.301736	1080.58892	-0.61108	-0.00033078	3.2567	0.0017628	2.6456	0.0014321	541.3033960954899	47.128	1.086	47.128	46.852	47.938	0					93	31	5	0	0	0	0.67687	1	4711	4711		47.657	1.2006	1	12844000			49531	10333	34440	34493	54976	54976					0.05184724545210884
LVAAEARQRA	10	Unmodified	_LVAAEARQRA_					0	0	0			REV__ENSG00000128951|ENST00000331200|DUT	REV__ENSG00000128951|ENST00000331200|DUT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.25244140625	2	542.814722	1083.61489	-1.2115	-0.00065765	-2.5469	-0.0013825	-3.7584	-0.0020401	542.8133436457459	44.593	0.73366	44.489	44.203	44.937	-0.10444					29	18	2	0	0	0	0.03519	1	4166	4166		5.9211	0	1	93086	+		49532	23023	34441	34494	54977	54977					0.07642754831704224
LVAAEHCHNS	10	Unmodified	_LVAAEHCHNS_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7461547851562	2	540.74819	1079.48183	-0.69761	-0.00037723	-3.0063	-0.0016257	-3.7039	-0.0020029	540.746388096594	75.729	0.89917	75.456	75.144	76.043	-0.27266					46	22	3	0	0	0	0.57594	1	8949	8949		79.713	7.8351	1	2038300	+		49533	24466	34442	34495	54978	54978					-0.054734326164634695
LVAAEHCHNS	10	Unmodified	_LVAAEHCHNS_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.7464599609375	2	540.74819	1079.48183	-0.51294	-0.00027737	-3.0247	-0.0016356	-3.5377	-0.001913	540.7463601875733	75.725	1.3166	75.467	75.033	76.349	-0.25866					58	32	3	0	0	0	0.42446	2	8966	8955;8966		96.19	13.95	1	2053600	+		49534	24466	34442	34495	54979;54980	54980					-0.054734326164634695
LVAAGRPAL	9	Unmodified	_LVAAGRPAL_					0	0	0			REV__ENSG00000113296|ENST00000350881|THBS4	REV__ENSG00000113296|ENST00000350881|THBS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2742004394531	2	434.27417	866.533787	-0.22234	-9.6558E-05	0.065116	2.8278E-05	-0.15723	-6.828E-05	434.27417487933866	47.873	1.456	47.72	47.336	48.792	-0.15301					85	42	4	0	0	0	0.56952	1	4859	4859		54.765	2.4655	1	19138000	+		49535	22055	34443	34496	54981	54981					0.09518098859598467
LVAAGRPAL	9	Unmodified	_LVAAGRPAL_					0	0	0			REV__ENSG00000113296|ENST00000350881|THBS4	REV__ENSG00000113296|ENST00000350881|THBS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2749938964844	2	434.27417	866.533787	-0.41972	-0.00018227	0.26555	0.00011532	-0.15416	-6.695E-05	434.2742455559153	47.633	1.5808	47.692	47.354	48.935	0.059093					80	45	4	0	0	0	0.72268	1	4758	4758		44.531	0	1	18334000	+		49536	22055	34443	34496	54982	54982					0.09518098859598467
LVAAHRELSH	10	Unmodified	_LVAAHRELSH_					0	0	0			REV__ENSG00000163539|ENST00000682230|CLASP2	REV__ENSG00000163539|ENST00000682230|CLASP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.290771484375	2	566.814722	1131.61489	-0.63889	-0.00036213	4.3102	0.0024431	3.6713	0.0020809	566.8171776229564	60.426	0.74856	60.213	59.782	60.531	-0.21339					34	19	2	0	0	0	0.03519	1	6883	6883		44.117	0	1	210590	+		49537	25589	34444	34497	54983	54983					0.05434754831708233
LVAAIIWLN	9	Unmodified	_LVAAIIWLN_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7679748535156	2	506.813128	1011.6117	-0.13158	-6.6684E-05	-3.8872	-0.0019701	-4.0187	-0.0020368	506.81128005990274	61.208	0.48359	61.002	60.734	61.217	-0.20599					22	11	4	0	0	0	0.024357	1	6835	6835		26.796	0	1	314460	+		49538	21857	34445	34498	54984	54984					0.10636111724977582
LVAALLRL	8	Unmodified	_LVAALLRL_					0	0	0			REV__ENST00000569683.5_1_16:67144033-67168649:+|nuORF	REV__ENST00000569683.5_1_16:67144033-67168649:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.8025207519531	2	434.802563	867.590573	-0.10355	-4.5025E-05	0.41901	0.00018219	0.31545	0.00013716	434.80258553449914	65.927	0.92402	65.686	65.414	66.338	-0.24145					64	22	4	0	0	0	0.67787	1	7563	7563		69.093	0	1	3442700	+		49539	35375	34446	34499	54985	54985					0.15148146416129293
LVAALLRL	8	Unmodified	_LVAALLRL_					0	0	0			REV__ENST00000569683.5_1_16:67144033-67168649:+|nuORF	REV__ENST00000569683.5_1_16:67144033-67168649:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.8028259277344	2	434.802563	867.590573	-0.67817	-0.00029487	0.83446	0.00036283	0.15629	6.7957E-05	434.8027786390961	65.961	0.99223	65.748	65.421	66.414	-0.21327					63	24	4	0	0	0	0.54157	1	7547	7547		81.716	0	1	3002400	+		49540	35375	34446	34499	54986	54986					0.15148146416129293
LVAALQNAW	9	Unmodified	_LVAALQNAW_					0	0	0			REV__nc|ENSG00000159322|Q9BRR6-5|ADPGK	REV__nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2602844238281	2	493.276909	984.539266	0.59802	0.00029499	-3.726	-0.001838	-3.128	-0.001543	493.27658247490876	83.342	0.42712	83.251	82.958	83.385	-0.090454					12	9	2	0	0	0	0.024517	1	10368	10368		26.796	8.4717	1	53778	+		49541	36825	34447	34500	54987	54987					0.046377776514077595
LVAARLEP	8	Unmodified	_LVAARLEP_					0	0	0			REV__ENST00000373548.7_1_1:32798641-32798926:+|nuORF	REV__ENST00000373548.7_1_1:32798641-32798926:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.2868957519531	2	434.766178	867.517802	0.13271	5.7696E-05	0.846	0.00036781	0.97871	0.00042551	434.766549525624	52.245	0.41381	52.245	51.977	52.391	0					14	10	2	0	0	0	0.027866	1	5613	5613		33.516	0	1	118470	+		49542	31259	34448	34501	54988	54988					0.07874392622704818
LVAARLEP	8	Unmodified	_LVAARLEP_					0	0	0			REV__ENST00000373548.7_1_1:32798641-32798926:+|nuORF	REV__ENST00000373548.7_1_1:32798641-32798926:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.29498291015625	2	434.766178	867.517802	1.6037	0.00069723	-1.4763	-0.00064183	0.12743	5.5402E-05	434.7654597279659	59.378	0.57402	59.178	58.888	59.463	-0.20016					27	15	3	0	0	0	0.027866	1	6782	6782		38.806	0	1	250650	+		49543	31259	34448	34501	54989	54989					0.07874392622704818
LVACFPKIVE	10	Unmodified	_LVACFPKIVE_					0	0	0			REV__nc|ENSG00000065665|Q9H9S3-2|SEC61A2	REV__nc|ENSG00000065665|Q9H9S3-2|SEC61A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7926025390625	2	559.817553	1117.62055	-0.78141	-0.00043745	-0.61104	-0.00034207	-1.3925	-0.00077952	559.8159685665249	52.537	0.38187	52.268	52.089	52.471	-0.26904					11	9	2	0	0	0	0.03519	1	5440	5440		31.955	13.63	1	125910	+		49544	20320	34449	34502	54990	54990					0.06644717299172953
LVACLLPIL	9	Unmodified	_LVACLLPIL_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000551414.1_1_14:31762513-31765297:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2640686035156	2	477.806457	953.598361	0.34292	0.00016385	3.116	0.0014888	3.4589	0.0016527	477.8078273226848	38.984	0.80814	38.984	38.515	39.323	0					43	21	3	0	0	0	0.024389	1	3297	3297		39.021	0.21535	1	685610			49545	4352	34450	34503	54991	54991					0.11970537621414223
LVACLPALR	9	Unmodified	_LVACLPALR_					0	0	0		INSC|p.A491P|1|0.32|ENSG00000188487|chr11:15239011-15239011|G/C|missense_variant	INSC|p.A491P|1|0.32|ENSG00000188487|chr11:15239011-15239011|G/C|missense_variant	INSC|p.A491P|1|0.32|ENSG00000188487|chr11:15239011-15239011|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7719421386719	2	478.291505	954.568457	-0.70113	-0.00033534	3.7121	0.0017755	3.011	0.0014401	478.29306356643065	44.842	0.48321	44.693	44.455	44.938	-0.1488					27	13	3	0	0	0	0.024293	1	4286	4286		42.474	3.453	1	348880			49546	17771	34451	34504	54992	54992					0.08935598676055179
LVACVDYFL	9	Unmodified	_LVACVDYFL_					0	0	0		ENST00000482378.6_2_12:56226934-56227222:+|nuORF	ENST00000482378.6_2_12:56226934-56227222:+|nuORF	ENST00000482378.6_2_12:56226934-56227222:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7748413085938	2	521.767529	1041.5205	-0.91204	-0.00047587	3.0076	0.0015693	2.0955	0.0010934	521.7687042443517	52.343	0.66036	52.224	51.939	52.599	-0.11875					40	16	3	0	0	0	0.4855	1	5426	5426		60.294	2.4827	1	2113300			49547	15254	34452	34505	54993	54993					0.0014047996535282437
LVADAKHN	8	Unmodified	_LVADAKHN_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	434.24212646484375	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.622	1	97.485	96.985	97.985	-0.1367								0	0	0	0.66038	1	12071	12071		44.117	1.6423	1		+		49548	34774	34453	34506	54994	54994					0.022443450661853603
LVADKPLL	8	Unmodified	_LVADKPLL_					0	0	0			REV__ENST00000278616.8_1_11:108114757-108114799:+|nuORF	REV__ENST00000278616.8_1_11:108114757-108114799:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.778754	867.542954	0.40532	0.00017623	2.8811	0.0012527	3.2864	0.0014289	434.779881348069	42.323	1.8081	42.349	41.709	43.517	0.026012					172	50	4	0	0	0	0.96719	1	3864	3864		42.474	0	1	2864800	+		49549	29866	34454	34507	54995	54995					0.10388447425293634
LVADKPLL	8	Unmodified	_LVADKPLL_					0	0	0			REV__ENST00000278616.8_1_11:108114757-108114799:+|nuORF	REV__ENST00000278616.8_1_11:108114757-108114799:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.78045654296875	2	434.778754	867.542954	-0.096708	-4.2046E-05	3.3703	0.0014653	3.2736	0.0014233	434.78008853825247	40.597	2.0449	40.372	39.62	41.665	-0.225					180	53	4	0	0	0	1.0239	1	3525	3525		33.516	0	1	6024800	+		49550	29866	34454	34507	54996	54996					0.10388447425293634
LVADVYESV	9	Unmodified	_LVADVYESV_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2724609375	2	497.758215	993.501877	-0.042255	-2.1033E-05	2.0467	0.0010188	2.0045	0.00099774	497.7590959750966	52.628	0.47333	52.628	52.391	52.864	0					17	11	2	0	0	0	0.024412	1	5629	5629		40.573	10.069	1	93106	+		49551	20042	34455	34508	54997	54997					0.00486641595148285
LVAEAEEH	8	Unmodified	_LVAEAEEH_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.9393005371094	2	449.219257	896.423961	0.26286	0.00011808	-0.18865	-8.4747E-05	0.074206	3.3335E-05	449.219023802011	46.152	0.44569	46.056	45.849	46.295	-0.096653					27	11	3	0	0	0	0.027866	1	4459	4459		31.955	7.4508	1	318100	+		49552	25739	34456	34509	54998	54998					-0.02839371270238189
LVAEAEEH	8	Unmodified	_LVAEAEEH_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	449.219257	896.423961	-0.21751	-9.7708E-05	0.069468	3.1206E-05	-0.14804	-6.6501E-05	449.2192003106749	46.392	0.49575	46.131	45.891	46.387	-0.26118	0.060423	4.5288E-05	NaN	31.955	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244090	+		49553	25739	34456	34509							-0.02839371270238189
LVAEAEEH	8	Unmodified	_LVAEAEEH_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	449.219257	896.423961	-0.7239	-0.00032519	0.12208	5.4842E-05	-0.60182	-0.00027035	449.2191807437738	46.227	0.62984	46.025	45.706	46.336	-0.20226	-0.04558	9.2558E-05	NaN	31.955	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472360	+		49554	25739	34456	34509							-0.02839371270238189
LVAEEVGRAVG	11	Unmodified	_LVAEEVGRAVG_					0	0	0		ENST00000482704.1_1_2:96689607-96690664:-|nuORF	ENST00000482704.1_1_2:96689607-96690664:-|nuORF	ENST00000482704.1_1_2:96689607-96690664:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2687377929688	2	550.308938	1098.60332	-0.59614	-0.00032806	4.0644	0.0022367	3.4682	0.0019086	550.8107478428248	65.127	0.3205	64.871	64.661	64.981	-0.25562					9	7	2	0	0	0	0.024752	1	7408	7408		40.778	9.2484	1	104720			49555	15266	34457	34510	54999	54999					0.05796513017708094
LVAEGNLYSD	10	Unmodified	_LVAEGNLYSD_					0	0	0		nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7464599609375	2	540.764029	1079.5135	-0.46471	-0.0002513	1.6942	0.00091618	1.2295	0.00066488	540.7643640767718	75.935	0.5425	75.677	75.279	75.822	-0.25865					21	13	2	0	0	0	0.03519	1	8966	8966		116.9	29.207	1	84494			49556	1419	34458	34511	55000	55000					-0.02307161381509104
LVAEGNLYSD	10	Unmodified	_LVAEGNLYSD_					0	0	0		nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7462158203125	2	540.764029	1079.5135	-0.73588	-0.00039794	-0.2262	-0.00012232	-0.96208	-0.00052026	540.7644123837578	75.743	0.34675	75.567	75.312	75.659	-0.17548					17	8	3	0	0	0	0.03519	1	8939	8939		93.195	47.244	1	79098			49557	1419	34458	34511	55001	55001					-0.02307161381509104
LVAEPPKPDVA	11	Unmodified	_LVAEPPKPDVA_					0	0	0		ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B;ENST00000432242.5_1_2:98736050-98809363:+|nuORF;nc|ENSG00000168658|Q502W6-2|VWA3B;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF;ENST00000422503.6_1_2:98732117-98833284:+|nuORF	ENSG00000168658|ENST00000477737|VWA3B	ENSG00000168658|ENST00000477737|VWA3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.3200073242188	2	568.321514	1134.62847	0.027463	1.5608E-05	-3.0262	-0.0017198	-2.9987	-0.0017042	568.3199357707957	20.193	0.67675	20.025	19.767	20.444	-0.16774					50	13	5	0	0	0	1.0344	1	534	534		29.17	0.020503	1	2087800			49558	7850	34459	34512	55002	55002					0.06654567820282864
LVAERVNLY	9	Unmodified	_LVAERVNLY_					0	0	0			REV__ENSG00000128965|ENST00000617768|CHAC1	REV__ENSG00000128965|ENST00000617768|CHAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7883911132812	2	538.808574	1075.60259	-0.9069	-0.00048865	1.679	0.00090464	0.77206	0.00041599	538.8080073879697	56.977	0.67953	57.072	56.749	57.429	0.09531					36	18	3	0	0	0	0.024466	1	6366	6366		18.324	0	1	606370	+		49559	23024	34460	34513	55003	55003					0.06781718368665679
LVAFIFSLP	9	Unmodified	_LVAFIFSLP_					0	0	0		ENSG00000172772|ENST00000395079|OR10W1	ENSG00000172772|ENST00000395079|OR10W1	ENSG00000172772|ENST00000395079|OR10W1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7508850097656	2	503.802229	1005.5899	-0.12008	-6.0497E-05	-1.497	-0.00075417	-1.617	-0.00081466	503.8014804768817	33.774	0.43827	33.83	33.615	34.054	0.056572					17	10	2	0	0	0	0.024443	1	2423	2423		26.796	0	1	112280			49560	8306	34461	34514	55004	55004					0.08733306976421318
LVAFMLSTL	9	Unmodified	_LVAFMLSTL_					0	0	0		ENSG00000181499|ENST00000321252|OR6T1	ENSG00000181499|ENST00000321252|OR6T1	ENSG00000181499|ENST00000321252|OR6T1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2553405761719	2	497.785721	993.55689	-0.65635	-0.00032672	4.0855	0.0020337	3.4292	0.001707	497.7875762460998	43.745	2.1481	43.745	42.786	44.934	0					158	60	6	0	0	0	0.024325	1	4061	4061		31.955	0	1	7011000			49561	9047	34462	34515	55005	55005					0.05985356862061053
LVAFPPEV	8	Unmodified	_LVAFPPEV_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.21185302734375	2	436.249829	870.485105	0.61337	0.00026758	-1.4402	-0.0006283	-0.82685	-0.00036071	436.2492072802207	42.817	0.28846	42.843	42.717	43.005	0.026012					11	7	2	0	0	0	0.027866	1	3925	3925		26.796	9.4311	1	99050			49562	7998	34463	34516	55006	55006					0.04468185499854371
LVAGAISGIII	11	Unmodified	_LVAGAISGIII_					0	0	0			REV__ENSG00000073670|ENST00000200557|ADAM11	REV__ENSG00000073670|ENST00000200557|ADAM11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	513.831517	1025.64848	-0.29351	-0.00015081	-0.024575	-1.2627E-05	-0.31808	-0.00016344	513.8314423041779	67.309	1.0921	67.333	67.071	68.163	0.023911					77	27	4	0	0	0	0.49334	1	7967	7967		76.774	2.5191	1	5611200	+		49563	20505	34464	34517	55007	55007					0.13668363550914364
LVAGGARQIVP	11	Unmodified	_LVAGGARQIVP_					0	0	0			REV__nc|ENSG00000042445|Q6NUM9-2|RETSAT	REV__nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8316040039062	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.782	1	9306	9306		58.782	19.976	1	94452000	+		49564	20100	34465	34518	55008	55008					0.10849113496919927
LVAGGVAGVSV	11	Unmodified	_LVAGGVAGVSV_					0	0	0		ENSG00000144741|ENST00000354883|SLC25A26	ENSG00000144741|ENST00000354883|SLC25A26	ENSG00000144741|ENST00000354883|SLC25A26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.7750549316406	2	464.776742	927.538931	0.79679	0.00037033	-0.92622	-0.00043048	-0.12942	-6.0153E-05	464.77617105274163	51.174	0.54122	50.993	50.76	51.302	-0.18071					31	13	3	0	0	0	0.96716	1	5248	5248		44.117	6.9577	1	3101900			49565	5763	34466	34519	55009	55009					0.07226357931574512
LVAGGVALML	10	Unmodified	_LVAGGVALML_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28826904296875	2	472.285889	942.557224	0.48131	0.00022732	3.1588	0.0014918	3.6401	0.0017192	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.1309	1	11760	11760		26.796	0	1	42478000	+		49566	22342	34467	34520	55010	55010					0.08364776581913702
LVAKELGQT	9	Unmodified	_LVAKELGQT_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7927551269531	2	479.782025	957.549496	-0.062306	-2.9893E-05	0.061957	2.9726E-05	-0.00034899	-1.6744E-07	479.78186664150866	50.21	1.0076	50.21	49.768	50.775	0					69	29	4	0	0	0	0.024374	1	5342	5342		32.812	15.447	1	2708500			49567	3432	34468	34521	55011	55011					0.06902340586009359
LVAKELGQT	9	Unmodified	_LVAKELGQT_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.782025	957.549496	-0.040444	-1.9404E-05	0.001819	8.727E-07	-0.038625	-1.8532E-05	479.78184410436097	50.047	0.80523	50.128	49.737	50.543	0.080994	-0.066052	3.4409E-05	NaN	32.812	62	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3420100			49568	3432	34468	34521							0.06902340586009359
LVAKELGQT	9	Unmodified	_LVAKELGQT_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.782025	957.549496	0.53122	0.00025487	-0.079034	-3.7919E-05	0.45218	0.00021695	479.7818084182161	50.287	0.63703	50.181	49.894	50.531	-0.10558	-0.01291	-4.3175E-05	NaN	32.812	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189630			49569	3432	34468	34521							0.06902340586009359
LVAKPFLV	8	Unmodified	_LVAKPFLV_					0	0	0		ENST00000174618.4_1_17:2304187-2304379:-|nuORF	ENST00000174618.4_1_17:2304187-2304379:-|nuORF	ENST00000174618.4_1_17:2304187-2304379:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.25103759765625	2	443.791664	885.568775	-0.32663	-0.00014496	-3.2144	-0.0014265	-3.541	-0.0015715	443.7905711177879	29.011	0.37498	29.014	28.755	29.129	0.0031376					12	8	2	0	0	0	0.027866	1	1723	1723		14.664	0.88877	1	27253			49570	11117	34469	34522	55012	55012					0.12141341667563665
LVAKREAE	8	Unmodified	_LVAKREAE_					0	0	0			REV__ENST00000224807.9_1_10:102792130-102794459:+|nuORF	REV__ENST00000224807.9_1_10:102792130-102794459:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.26629638671875	2	458.266542	914.51853	-0.63385	-0.00029047	0.66578	0.0003051	0.031927	1.4631E-05	458.26666868268615	28.482	1.0627	28.313	27.966	29.029	-0.16897					58	24	3	0	0	0	0.68164	1	1672	1672		68.787	2.9837	1	1512400	+		49571	29367	34470	34523	55013	55013					0.05785187271760606
LVAKRIEDL	9	Unmodified	_LVAKRIEDL_					0	0	0			REV__ENSG00000120685|ENST00000352251|PROSER1	REV__ENSG00000120685|ENST00000352251|PROSER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.8214111328125	2	528.824224	1055.63389	-0.54852	-0.00029007	0.1015	5.3675E-05	-0.44702	-0.00023639	528.8241085496753	54.926	1.3332	54.926	54.524	55.858	0					87	37	4	0	0	0	0.45795	1	6039	6039		62.107	6.6032	1	4446100	+		49572	22547	34471	34524	55014	55014					0.10830291402749026
LVAKRKFK	8	Unmodified	_LVAKRKFK_					0	0	0		nc|ENSG00000117013|P56696-2|KCNQ4;ENSG00000117013|ENST00000347132|KCNQ4	nc|ENSG00000117013|P56696-2|KCNQ4	nc|ENSG00000117013|P56696-2|KCNQ4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2966613769531	2	495.334562	988.65457	0.75883	0.00037587	4.3181	0.0021389	5.0769	0.0025148	495.3365312888106	54.607	0.15012	54.401	54.318	54.468	-0.20613					5	3	2	0	0	0	0.027866	1	5787	5787		9.4706	4.7888	1	69261			49573	3605	34472	34525	55015	55015					0.15978926573086483
LVALCFEL	8	Carbamidomethyl (C)	_LVALC(Carbamidomethyl (C))FEL_	LVALC(1)FEL		LVALC(66)FEL		0	1	0			REV__ENSG00000110077|ENST00000528851|MS4A6A	REV__ENSG00000110077|ENST00000528851|MS4A6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7624206542969	2	482.762246	963.50994	0.37097	0.00017909	-0.1437	-6.9372E-05	0.22727	0.00010972	482.7620442262988	87.344	2.5337	87.208	86.413	88.947	-0.13613					133	60	3	0	0	0	0.71717	1	10621	10621		65.897	8.0862	1	754440	+		49574	21837	34473	34526	55016	55016	281				0.026724973109367056
LVALCLYRNL	10	Unmodified	_LVALCLYRNL_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3445434570312	2	589.341726	1176.6689	-0.80912	-0.00047685	3.2164	0.0018955	2.4072	0.0014187	589.3434865746038	94.967	0.64822	94.829	94.506	95.155	-0.13779					49	14	4	0	0	0	1.1267	1	11714	11714		29.15	1.0681	1	1636700	+		49575	28147	34474	34527	55017	55017					0.08763210939082455
LVALGFTIF	9	Unmodified	_LVALGFTIF_					0	0	0		nc|ENSG00000174151|Q8N8Q1-4|CYB561D1;ENST00000490926.1_1_3:50388858-50395589:+|nuORF;nc|ENSG00000174151|Q8N8Q1-2|CYB561D1;ENSG00000174151|ENST00000420578|CYB561D1;nc|ENSG00000174151|Q8N8Q1-3|CYB561D1;ENSG00000114395|ENST00000425346|CYB561D2	nc|ENSG00000174151|Q8N8Q1-4|CYB561D1;ENSG00000114395|ENST00000425346|CYB561D2	ENSG00000114395|ENST00000425346|CYB561D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2484436035156	2	490.794404	979.574254	0.14925	7.3253E-05	-4.4592	-0.0021885	-4.3099	-0.0021153	490.7921336931918	68.274	0.73701	67.982	67.743	68.48	-0.29267					30	18	2	0	0	0	0.024466	1	8205	8205		18.324	0	1	1083200			49576	18527;3361	34475	34528	55018	55018					0.08365020459382322
LVALGFTIF	9	Unmodified	_LVALGFTIF_					0	0	0		nc|ENSG00000174151|Q8N8Q1-4|CYB561D1;ENST00000490926.1_1_3:50388858-50395589:+|nuORF;nc|ENSG00000174151|Q8N8Q1-2|CYB561D1;ENSG00000174151|ENST00000420578|CYB561D1;nc|ENSG00000174151|Q8N8Q1-3|CYB561D1;ENSG00000114395|ENST00000425346|CYB561D2	nc|ENSG00000174151|Q8N8Q1-4|CYB561D1;ENSG00000114395|ENST00000425346|CYB561D2	ENSG00000114395|ENST00000425346|CYB561D2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.794404	979.574254	0.31569	0.00015494	-4.752	-0.0023322	-4.4363	-0.0021773	490.79199813116145	67.94	0.68794	67.94	67.719	68.407	0	-0.046585	-0.00023387	NaN	18.324	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1260000			49577	18527;3361	34475	34528							0.08365020459382322
LVALHTVHFI	10	Unmodified	_LVALHTVHFI_					0	0	0		ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.3455200195312	2	575.342584	1148.67061	0.8633	0.00049669	4.2246	0.0024306	5.0879	0.0029273	575.3449012149558	97.098	1.2775	96.961	96.613	97.89	-0.13671					99	28	5	0	0	0	1.1166	1	12025	12025		30.504	2.4222	1	3730600			49578	5715	34476	34529	55019	55019					0.10222588019314571
LVALLGMP	8	Unmodified	_LVALLGMP_					0	0	0		ENSG00000167394|ENST00000300849|ZNF668;nc|ENSG00000167394|Q96K58-2|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.26348876953125	2	407.248775	812.482997	0.53218	0.00021673	0.10745	4.3758E-05	0.63963	0.00026049	407.25030906140705	21.49	1.0618	21.3	20.98	22.042	-0.19072					27	21	2	0	0	0	0.027866	1	670	670		33.493	8.989	1	30961			49579	7684	34477	34530	55020	55020					0.06925433490403066
LVALLPPGA	9	Unmodified	_LVALLPPGA_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;SORL1|p.M1581Cfs*34|1|0.09|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.77508544921875	2	425.773471	849.53239	-0.44034	-0.00018748	3.9742	0.0016921	3.5338	0.0015046	425.7750913073762	43.22	2.2821	43.081	42.737	45.019	-0.13929					150	64	5	0	0	0	0.99355	1	4010	4010		21.702	0	1	18199000			49580	5142	34478	34531	55021	55021					0.10160464770854105
LVALLPPGA	9	Unmodified	_LVALLPPGA_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;SORL1|p.M1581Cfs*34|1|0.09|ENSG00000137642|chr11:121605196-121605196|A/-|frameshift_variant;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7747497558594	2	425.773471	849.53239	-0.20506	-8.731E-05	3.2791	0.0013961	3.074	0.0013088	425.77482073258034	42.256	0.99166	42.024	41.733	42.725	-0.23186					102	26	5	0	0	0	0.93795	1	3771	3771		29.842	0	1	38059000			49581	5142	34478	34531	55022	55022					0.10160464770854105
LVALLQEF	8	Unmodified	_LVALLQEF_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.77484130859375	2	466.776211	931.537869	0.75769	0.00035367	-3.2978	-0.0015394	-2.5402	-0.0011857	466.7745127854159	21.1	1.1656	21.172	20.91	22.075	0.071487					48	23	3	0	0	0	1.0009	1	572	572		37.159	0.13063	1	111540	+		49582	22109	34479	34532	55023	55023					0.06936143562666075
LVALLQEF	8	Unmodified	_LVALLQEF_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.776211	931.537869	-0.92207	-0.0004304	-1.6228	-0.00075749	-2.5449	-0.0011879	466.77527884522016	21.312	1.0181	21.312	20.801	21.819	0	0.070158	0.00081892	NaN	37.159	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127490	+		49583	22109	34479	34532							0.06936143562666075
LVALLQEF	8	Unmodified	_LVALLQEF_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.776211	931.537869	-0.23209	-0.00010833	-2.4229	-0.0011309	-2.655	-0.0012393	466.77490654748493	21.332	0.86653	21.241	20.911	21.778	-0.090094	-0.00018853	7.2008E-05	NaN	37.159	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137780	+		49584	22109	34479	34532							0.06936143562666075
LVALLQEF	8	Unmodified	_LVALLQEF_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	466.776211	931.537869	0.75769	0.00035367	-3.2978	-0.0015394	-2.5402	-0.0011857	466.7745127854159	21.1	1.1656	21.172	20.91	22.075	0.071487	-0.06997	-0.00074481	NaN	37.159	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111540	+		49585	22109	34479	34532							0.06936143562666075
LVALLRREDG	10	Unmodified	_LVALLRREDG_					0	0	0		sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	sp|P25215|UL87_EBVB9LategeneexpressionregulatorBcRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BcRF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.8222045898438	2	571.33803	1140.66151	-0.028261	-1.6147E-05	-0.63643	-0.00036362	-0.66469	-0.00037976	571.3376652431465	52.224	0.29807	52.076	51.95	52.248	-0.14735					11	7	2	0	0	0	0.03519	1	5559	5559		23.042	3.6825	1	101380			49586	37951	34480	34533	55024	55024					0.09680194662996655
LVALRVVNNSH	11	Unmodified	_LVALRVVNNSH_					0	0	0			REV__ENST00000518894.1_1_5:172382906-172386340:-|nuORF	REV__ENST00000518894.1_1_5:172382906-172386340:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3560180664062	2	611.356754	1220.69895	-0.81331	-0.00049722	-0.21283	-0.00013012	-1.0261	-0.00062734	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	0.96599	1	12092	12092		44.377	10.456	1	11166000	+		49587	34245	34481	34534	55025	55025					0.09743285928584555
LVALSILMGY	10	Unmodified	_LVALSILMGY_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2857055664062	2	540.312103	1078.60965	-0.93847	-0.00050706	4.4688	0.0024145	3.5303	0.0019075	540.3145441207339	40.391	0.36162	40.242	39.969	40.331	-0.1497					15	9	2	0	0	0	0.03519	1	3482	3482		38.806	10.924	1	353830			49588	5741	34482	34535	55026	55026					0.0734931492488613
LVALTEQY	8	Unmodified	_LVALTEQY_					0	0	0		ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.7560729980469	2	468.755475	935.496398	0.043144	2.0224E-05	0.77008	0.00036098	0.81323	0.0003812	468.75572005241247	94.247	1.1748	94.247	93.91	95.085	-0.00023651					75	27	4	0	0	0	1.0574	1	11969	11969		25.45	0.94616	1	2005900			49589	853	34483	34536	55027	55027					0.02606962803326951
LVALYILL	8	Unmodified	_LVALYILL_					0	0	0			REV__ENSG00000189181|ENST00000342623|OR14I1	REV__ENSG00000189181|ENST00000342623|OR14I1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.78692626953125	2	459.307147	916.599741	-1.5706	-0.00072141	0.97061	0.00044581	-0.60004	-0.0002756	459.3077474618977	92.32	0.15951	92.176	92.047	92.206	-0.14356					5	3	2	0	0	0	0.027866	1	11323	11323		10.185	0	1	45762	+		49590	28105	34484	34537	55028	55028					0.138104949818171
LVANLLAH	8	Unmodified	_LVANLLAH_					0	0	0		ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000070886|P29322-2|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77496337890625	2	425.760895	849.507237	-0.47022	-0.0002002	4.4859	0.0019099	4.0157	0.0017097	425.76416564529006	43.294	0.29511	43.155	43.063	43.358	-0.13929					10	7	2	0	0	0	0.027866	1	4049	4049		35.201	0	1	144790			49591	1439	34485	34538	55029	55029					0.07646409968288026
LVANQNPI	8	Unmodified	_LVANQNPI_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.747802734375	2	434.747985	867.481417	-0.39117	-0.00017006	0.26586	0.00011558	-0.12531	-5.4476E-05	434.74823731018006	65.55	1.4355	65.278	64.786	66.221	-0.27283					145	38	5	0	0	0	0.65272	1	7821	7821		71.378	15.874	1	100810000			49592	9292	34486	34539	55030	55030					0.0423751572599258
LVAPGRSLLL	10	Unmodified	_LVAPGRSLLL_					0	0	0			REV__ENST00000378980.7_1_9:34564791-34581145:-|nuORF	REV__ENST00000378980.7_1_9:34564791-34581145:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.838623046875	2	519.837134	1037.65972	0.60249	0.0003132	-0.074039	-3.8488E-05	0.52845	0.00027471	519.8369791235318	70.24	0.48982	69.947	69.673	70.163	-0.29291					23	13	3	0	0	0	1.0002	1	8467	8467		45.972	5.1941	1	4812800	+		49593	31422	34487	34540	55031	55031					0.1423918564505584
LVAPWGLL	8	Unmodified	_LVAPWGLL_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7803039550781	2	434.768189	867.521825	-0.62197	-0.00027041	2.849	0.0012387	2.2271	0.00096825	434.7685861427997	38.479	0.12009	38.479	38.395	38.515	0					4	2	2	0	0	0	0.027866	1	3223	3223		1.619	0	1	24635	+		49594	26921	34488	34541	55032	55032					0.08276482116434636
LVAQAWSYL	9	Unmodified	_LVAQAWSYL_					0	0	0			REV__ENST00000375638.7_1_6:31802780-31805136:+|nuORF	REV__ENST00000375638.7_1_6:31802780-31805136:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7826538085938	2	525.784567	1049.55458	-0.067203	-3.5334E-05	-4.2166	-0.002217	-4.2838	-0.0022524	525.7823705063088	49.99	1.1902	49.71	49.359	50.549	-0.27977					84	31	6	0	0	0	0.80658	1	5031	5031		38.806	3.6054	1	15789000	+		49595	31329	34489	34542	55033	55033					0.031786444485987886
LVAQLDMFLT	10	Unmodified	_LVAQLDMFLT_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.81396484375	2	575.812467	1149.61038	-0.14217	-8.1864E-05	2.7938	0.0016087	2.6516	0.0015268	575.8140611733836	47.606	0.89416	47.419	47.084	47.978	-0.18684					74	23	5	0	0	0	1.0142	1	4667	4667		44.117	2.6902	1	8164400	+		49596	21779	34490	34543	55034	55034					0.041561095739098164
LVAQLDTE	8	Unmodified	_LVAQLDTE_					0	0	0		nc|ENSG00000162729|Q969P0-2|IGSF8;nc|ENSG00000162729|Q969P0-3|IGSF8;ENSG00000162729|ENST00000314485|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.25103759765625	2	444.737283	887.460012	-0.33487	-0.00014893	-4.4054	-0.0019593	-4.7403	-0.0021082	444.7353665056778	29.172	0.64551	29.175	28.631	29.276	0.0031357					22	15	4	0	0	0	0.027866	1	1723	1723		12.959	0.75233	1	523400			49597	6981	34491	34544	55035	55035					0.011780859066107041
LVARLADES	9	Unmodified	_LVARLADES_					0	0	0		nc|ENSG00000187266|P19235-2|EPOR;nc|ENSG00000187266|P19235-3|EPOR;ENSG00000187266|ENST00000222139|EPOR	nc|ENSG00000187266|P19235-2|EPOR	nc|ENSG00000187266|P19235-2|EPOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.77911376953125	2	487.269281	972.52401	-0.28501	-0.00013887	0.37179	0.00018116	0.086784	4.2287E-05	487.2693447667364	56.952	0.3689	56.788	56.641	57.01	-0.16431					20	10	3	0	0	0	0.024436	1	6344	6344		38.806	5.2906	1	333730			49598	9620	34492	34545	55036	55036					0.03664866063570571
LVASPETVTV	10	Unmodified	_LVASPETVTV_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2898864746094	2	508.28714	1014.55973	1.5557	0.00079075	3.1772	0.001615	4.733	0.0024057	508.2886121284091	16.585	0.27276	16.431	16.294	16.567	-0.15376					13	7	3	0	0	0	1.1237	1	78	78		23.042	1.0826	1	57122	+		49599	21526	34493	34546	55037	55037					0.05302903520578184
LVASPLVL	8	Unmodified	_LVASPLVL_					0	0	0			REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.89971923828125	2	406.268022	810.521491	0.45753	0.00018588	-4.2071	-0.0017092	-3.7496	-0.0015233	406.26629205863213	23.896	0.3047	23.716	23.519	23.824	-0.17989					8	6	2	0	0	0	0.027866	1	970	970		9.4706	0	1	30564	+		49600	28134	34494	34547	55038	55038					0.10865062396555913
LVASPLVL	8	Unmodified	_LVASPLVL_					0	0	0			REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	406.268022	810.521491	1.7828	0.00072429	-5.3812	-0.0021862	-3.5984	-0.0014619	406.26576781309484	23.918	0.40086	23.737	23.582	23.983	-0.18089	0.010392	-0.00012762	NaN	15.636	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34198	+		49601	28134	34494	34547							0.10865062396555913
LVASPVLGL	9	Unmodified	_LVASPVLGL_					0	0	0			REV__ENSG00000162191|ENST00000301935|UBXN1	REV__ENSG00000162191|ENST00000301935|UBXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.78009033203125	2	434.778754	867.542954	-0.72648	-0.00031586	3.6936	0.0016059	2.9671	0.0012901	434.7802124734377	48.558	1.352	48.282	47.775	49.127	-0.27598					129	36	4	0	0	0	0.78069	1	4823	4823		40.573	7.057	1	3466800	+		49602	25420	34495	34548	55039	55039					0.10388447425293634
LVATMLVGPG	10	Unmodified	_LVATMLVGPG_					0	0	0			REV__ENST00000261597.8_1_18:2571510-2573058:+|nuORF	REV__ENST00000261597.8_1_18:2571510-2573058:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7919616699219	2	479.275521	956.536489	-0.17918	-8.5878E-05	-1.9551	-0.00093703	-2.1343	-0.0010229	479.27421143181573	45.762	0.5529	45.501	45.149	45.701	-0.26118					23	15	2	0	0	0	0.03519	1	4379	4379		55.504	0	1	134290	+		49603	29629	34496	34549	55040	55040					0.0564818620226788
LVAVAKATL	9	Unmodified	_LVAVAKATL_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.7536315917969	2	443.292028	884.569503	2.0085	0.00089036	-1.7045	-0.0007556	0.30399	0.00013476	443.29122303755764	59.254	0.35654	59.067	58.866	59.222	-0.18705					14	9	2	0	0	0	0.024354	1	6710	6710		47.916	10.756	1	87358	+		49604	21920	34497	34550	55041	55041					0.12260136316615444
LVAVLEEKSIE	11	Unmodified	_LVAVLEEKSIE_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.5727844238281	3	410.571099	1228.69147	6.0112	0.002468	-4.3882	-0.0018017	1.623	0.00066635	410.56923047202	17.602	0.24504	17.663	17.509	17.754	0.06036					9	6	2	0	0	0	1.0684	1	153	153		20.03	3.3131	1	22244	+		49605	27885	34498	34551	55042	55042					0.08627088817684125
LVAVLEEKSIE	11	Unmodified	_LVAVLEEKSIE_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	410.571099	1228.69147	4.4081	0.0018099	-2.529	-0.0010383	1.8791	0.00077152	410.569873603044	17.401	0.34738	17.401	17.25	17.598	0	-0.10427	0.00011035	NaN	20.03	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54252	+		49606	27885	34498	34551							0.08627088817684125
LVAVLEEKSIE	11	Unmodified	_LVAVLEEKSIE_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	410.571099	1228.69147	0.94091	0.00038631	0.8628	0.00035424	1.8037	0.00074056	410.9059087564277	17.595	0.42202	17.453	17.229	17.651	-0.14278	-0.05285	0.0042881	NaN	20.03	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28429	+		49607	27885	34498	34551							0.08627088817684125
LVAVLEEKSIE	11	Unmodified	_LVAVLEEKSIE_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	410.571099	1228.69147	6.0112	0.002468	-4.3882	-0.0018017	1.623	0.00066635	410.56923047202	17.602	0.24504	17.663	17.509	17.754	0.06036	0.15712	-0.0021796	NaN	20.03	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22244	+		49608	27885	34498	34551							0.08627088817684125
LVAVVVFRR	9	Unmodified	_LVAVVVFRR_					0	0	0			REV__ENST00000502486.5_2_4:42153705-42154329:-|nuORF	REV__ENST00000502486.5_2_4:42153705-42154329:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7869262695312	2	529.845294	1057.67603	0.12935	6.8537E-05	-1.3435	-0.00071183	-1.2141	-0.0006433	529.8453370244724	57.048	0.37696	56.823	56.621	56.998	-0.2248					19	9	3	0	0	0	0.024535	1	6177	6177		25.45	6.0902	1	179750	+		49609	33929	34499	34552	55043	55043					0.14950311601796784
LVAVVYVL	8	Unmodified	_LVAVVYVL_					0	0	0			REV__ENST00000600801.5_1_3:181417563-181457401:+|nuORF	REV__ENST00000600801.5_1_3:181417563-181457401:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.5865173339844	2	438.283672	874.552791	0.53804	0.00023582	-3.1838	-0.0013954	-2.6458	-0.0011596	438.2821915910811	42.852	0.36167	42.878	42.68	43.042	0.026012					11	9	2	0	0	0	0.027866	1	3884	3884		43.626	8.4253	1	145710	+		49610	35849	34500	34553	55044	55044					0.1104963543065196
LVAVVYVL	8	Unmodified	_LVAVVYVL_					0	0	0			REV__ENST00000600801.5_1_3:181417563-181457401:+|nuORF	REV__ENST00000600801.5_1_3:181417563-181457401:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	438.283672	874.552791	0.20709	9.0763E-05	-2.9431	-0.0012899	-2.736	-0.0011991	438.28228357745127	42.732	0.39761	42.732	42.534	42.932	0	-0.073267	0.00013847	NaN	54.895	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141520	+		49611	35849	34500	34553							0.1104963543065196
LVAYKREL	8	Unmodified	_LVAYKREL_					0	0	0			REV__nc|ENSG00000187109|P55209-3|NAP1L1;REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7749328613281	2	496.300384	990.586216	-0.24399	-0.00012109	-0.0081206	-4.0302E-06	-0.25211	-0.00012512	496.3005037952667	73.209	0.44674	73.209	72.952	73.399	0					19	11	2	0	0	0	0.027866	1	8922	8922		25.45	8.0852	1	206490	+		49612	34919;27915	34501	34554	55045	55045					0.0905463720255284
LVAYVSTLVL	10	Unmodified	_LVAYVSTLVL_					0	0	0		nc|ENSG00000137204|Q9Y694-3|SLC22A7;nc|ENSG00000137204|Q9Y694-2|SLC22A7;ENSG00000137204|ENST00000372585|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.3287353515625	2	539.33135	1076.64815	-0.63484	-0.00034239	-0.46281	-0.00024961	-1.0977	-0.000592	539.3308416657255	106.89	0.33409	106.89	106.73	107.06	0.0018387					19	10	3	0	0	0	1.1166	1	13642	13642		30.504	6.3009	1	145220			49613	5100	34502	34555	55046	55046					0.11288943831050346
LVCHMTSLL	9	Carbamidomethyl (C),Oxidation (M)	_LVC(Carbamidomethyl (C))HM(Oxidation (M))TSLL_	LVC(1)HMTSLL	LVCHM(1)TSLL	LVC(63)HMTSLL	LVCHM(63)TSLL	0	1	1		ENSG00000162542|ENST00000294543|TMCO4;nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENST00000462171.1_1_1:20076843-20097914:-|nuORF	ENSG00000162542|ENST00000294543|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2757568359375	2	545.275195	1088.53584	-0.48422	-0.00026403	-1.2153	-0.00066267	-1.6995	-0.0009267	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.43973	1	9735	9735		63.306	10.37	1	63206000			49614	6951	34503	34556	55047	55047	84	286			-0.004889765090865694
LVCHMTSLL	9	Carbamidomethyl (C),Oxidation (M)	_LVC(Carbamidomethyl (C))HM(Oxidation (M))TSLL_	LVC(1)HMTSLL	LVCHM(1)TSLL	LVC(68)HMTSLL	LVCHM(68)TSLL	0	1	1		ENSG00000162542|ENST00000294543|TMCO4;nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENST00000462171.1_1_1:20076843-20097914:-|nuORF	ENSG00000162542|ENST00000294543|TMCO4	ENSG00000162542|ENST00000294543|TMCO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2743530273438	2	545.275195	1088.53584	-0.96677	-0.00052716	-0.5515	-0.00030072	-1.5183	-0.00082788	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.36105	2	9709	9648;9709		68.485	9.8957	1	52905000			49615	6951	34503	34556	55048;55049	55049	84	286			-0.004889765090865694
LVCISNVFI	9	Carbamidomethyl (C)	_LVC(Carbamidomethyl (C))ISNVFI_	LVC(1)ISNVFI		LVC(89)ISNVFI		0	1	0		ENST00000508855.5_1_5:86705134-86707048:-|nuORF	ENST00000508855.5_1_5:86705134-86707048:-|nuORF	ENST00000508855.5_1_5:86705134-86707048:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7738647460938	2	532.794078	1063.5736	-0.57337	-0.00030549	0.7666	0.00040844	0.19323	0.00010295	533.2938167546386	97.836	0.25916	97.836	97.639	97.898	0					7	5	2	0	0	0	0.022643	1	12480	12480		88.643	22.84	1	57376			49616	15794	34504	34557	55050	55050	211				0.04435857748012495
LVCLGALVDAY	11	Unmodified	_LVCLGALVDAY_					0	0	0		nc|ENSG00000131096|P10082-2|PYY;ENSG00000131096|ENST00000692052|PYY	nc|ENSG00000131096|P10082-2|PYY	nc|ENSG00000131096|P10082-2|PYY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7700805664062	2	568.804642	1135.59473	0.37076	0.00021089	2.2549	0.0012826	2.6256	0.0014935	568.8059163300834	72.444	0.84086	72.179	71.84	72.681	-0.26479					32	19	3	0	0	0	0.024729	1	8522	8522		37.159	9.0776	1	199150			49617	4494	34505	34558	55051	55051					0.03235823056888876
LVCLKVLGQ	9	Unmodified	_LVCLKVLGQ_					0	0	0		ZNF212|p.S179C|1|0.3|ENSG00000170260|chr7:149250802-149250802|C/G|missense_variant	ZNF212|p.S179C|1|0.3|ENSG00000170260|chr7:149250802-149250802|C/G|missense_variant	ZNF212|p.S179C|1|0.3|ENSG00000170260|chr7:149250802-149250802|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.3216552734375	2	486.799163	971.583773	-1.0376	-0.00050512	4.0063	0.0019503	2.9687	0.0014452	486.8011186929717	21.599	0.33994	21.386	21.118	21.458	-0.2128					10	6	2	0	0	0	0.024205	1	629	629		44.117	19.613	1	34193			49618	38182	34506	34559	55052	55052					0.09684465473264936
LVCPMSVQM	9	Carbamidomethyl (C),Oxidation (M)	_LVC(Carbamidomethyl (C))PMSVQM(Oxidation (M))_	LVC(1)PMSVQM	LVCPM(0.001)SVQM(0.999)	LVC(91)PMSVQM	LVCPM(-30)SVQM(30)	0	1	1			REV__ENSG00000137996|ENST00000370128|RTCA	REV__ENSG00000137996|ENST00000370128|RTCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7462158203125	2	540.747956	1079.48136	-0.71913	-0.00038887	-2.4835	-0.0013429	-3.2026	-0.0017318	540.7464515689823	75.587	1.2731	75.412	74.986	76.259	-0.17548					62	31	5	0	0	0	0.18915	1	8939	8939		90.777	16.522	2	2017500	+		49619	23805	34507	34560	55053	55053	309	704			-0.05520311652185228
LVCTWTDW	8	Unmodified	_LVCTWTDW_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2533569335938	2	512.233853	1022.45315	-0.12713	-6.512E-05	0.81233	0.0004161	0.6852	0.00035098	512.2348474668227	54.397	0.28169	54.151	53.949	54.231	-0.2453					9	8	2	0	0	0	0.027866	1	5769	5769		25.45	2.4077	1	352730	+		49620	28781	34508	34561	55054	55054					-0.05717550245606162
LVCWQWGIF	9	Unmodified	_LVCWQWGIF_					0	0	0		ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	ENSG00000168447|ENST00000343070|SCNN1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.308349609375	2	576.288963	1150.56337	0.20303	0.000117	-3.0092	-0.0017342	-2.8062	-0.0016172	576.2870606860396	75.132	0.12559	74.856	74.763	74.888	-0.27573					4	2	2	0	0	0	0.024386	1	8858	8858		33.516	0	1	23810			49621	7826	34509	34562	55055	55055					-0.005887051865784088
LVDDDRILV	9	Unmodified	_LVDDDRILV_					0	0	0			REV__ENST00000434597.2_1_9:37477166-37477928:+|nuORF	REV__ENST00000434597.2_1_9:37477166-37477928:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3289184570312	2	529.298039	1056.58152	-0.48099	-0.00025459	0.59226	0.00031348	0.11128	5.8898E-05	529.2982834046226	77.448	0.70848	77.448	77.209	77.918	0					23	16	2	0	0	0	0.024386	1	9621	9621		33.516	0	1	175690	+		49622	32426	34510	34563	55056	55056					0.0554970826913177
LVDDFDLLK	9	Unmodified	_LVDDFDLLK_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2966918945312	2	539.294965	1076.57538	-0.50889	-0.00027444	4.1428	0.0022342	3.6339	0.0019597	539.2969858809365	65.778	1.0211	65.536	65.126	66.148	-0.24145					65	24	4	0	0	0	0.18915	1	7546	7546		90.777	11.326	1	2687200	+		49623	25929	34511	34564	55057	55057					0.040151900376031335
LVDDNYFYL	9	Unmodified	_LVDDNYFYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.27685546875	2	581.276772	1160.53899	-0.65179	-0.00037887	0.5723	0.00033267	-0.079491	-4.6206E-05	581.2769827084251	86.49	1.0245	86.49	86.128	87.152	0					63	23	4	0	0	0	0.028071	2	10863	10863;10877		143.11	68.064	1	2034400			49624	8454	34512	34565	55058;55059	55058					-0.034856868590850354
LVDDNYFYL	9	Unmodified	_LVDDNYFYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.2767944335938	2	581.276772	1160.53899	-0.64516	-0.00037501	0.60305	0.00035054	-0.042105	-2.4475E-05	581.2769536822047	86.48	0.98223	86.435	86.076	87.058	-0.045105					65	22	4	0	0	0	0.072054	3	10841	10817;10828;10841		120.62	42.595	1	1986300			49625	8454	34512	34565	55060;55061;55062	55062					-0.034856868590850354
LVDDNYFYL	9	Unmodified	_LVDDNYFYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.2767944335938	2	581.276772	1160.53899	-0.28832	-0.00016759	0.1598	9.2886E-05	-0.12852	-7.4706E-05	581.2767390203621	86.421	0.93951	86.445	86.072	87.012	0.023666					64	21	4	0	0	0	0.13494	4	10787	10765;10775;10787;10802		102.77	23.322	1	1981300			49626	8454	34512	34565	55063;55064;55065;55066	55065					-0.034856868590850354
LVDDNYFYL	9	Unmodified	_LVDDNYFYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.2774047851562	2	581.276772	1160.53899	-0.12597	-7.3224E-05	0.13928	8.096E-05	0.013308	7.7357E-06	581.2767585099236	86.471	0.78315	86.329	85.971	86.755	-0.14218					42	17	3	0	0	0	0.22754	2	10499	10499;10511		85.359	5.9085	1	673740			49627	8454	34512	34565	55067;55068	55067					-0.034856868590850354
LVDDNYFYL	9	Unmodified	_LVDDNYFYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.2776489257812	2	581.276772	1160.53899	-0.32993	-0.00019178	0.37527	0.00021813	0.045338	2.6354E-05	581.2768784452962	86.52	0.947	86.383	86.006	86.953	-0.13734					44	21	3	0	0	0	0.20304	1	10490	10490		88.643	6.3378	1	658050			49628	8454	34512	34565	55069	55069					-0.034856868590850354
LVDDNYFYL	9	Unmodified	_LVDDNYFYL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	581.276772	1160.53899	-0.012141	-7.057E-06	0.16963	9.8603E-05	0.15749	9.1546E-05	581.2767305011407	86.552	0.78212	86.365	85.991	86.773	-0.18696	-0.042822	-0.00016305	NaN	143.11	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693350			49629	8454	34512	34565							-0.034856868590850354
LVDDPLEY	8	Unmodified	_LVDDPLEY_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2375793457031	2	482.237116	962.459678	-0.12481	-6.0187E-05	0.26154	0.00012612	0.13673	6.5936E-05	482.2371131068648	69.841	0.79331	69.574	69.287	70.08	-0.26725					52	18	4	0	0	0	0.93274	1	8130	8130		47.916	3.3845	1	1144100			49630	18410	34513	34566	55070	55070					-0.023053338132285717
LVDDPLEY	8	Unmodified	_LVDDPLEY_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2369384765625	2	482.237116	962.459678	-0.017055	-8.2244E-06	0.095704	4.6152E-05	0.078649	3.7928E-05	482.2370357084159	69.807	0.94699	69.557	69.196	70.143	-0.25063					60	22	4	0	0	0	0.93274	2	8117	8117;8131		47.916	5.446	1	1654600			49631	18410	34513	34566	55071;55072	55071					-0.023053338132285717
LVDFYFTSD	9	Unmodified	_LVDFYFTSD_					0	0	0			REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C	REV__nc|ENSG00000143434|Q9H3T2-2|SEMA6C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.30322265625	2	553.755672	1105.49679	-1.4286	-0.00079108	4.1668	0.0023074	2.7382	0.0015163	553.758005819817	35.965	0.48234	35.922	35.726	36.208	-0.042458					35	13	4	0	0	0	0.024412	1	2825	2825		24.203	0	1	209330	+		49632	24246	34514	34567	55073	55073					-0.05173662267452528
LVDGADAQPE	10	Unmodified	_LVDGADAQPE_					0	0	0			REV__ENSG00000105278|ENST00000262961|ZFR2	REV__ENSG00000105278|ENST00000262961|ZFR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8306579589844	2	507.740554	1013.46655	-0.8614	-0.00043737	1.5761	0.00080024	0.71467	0.00036287	507.7411351462468	48.928	2.36	48.648	46.651	49.011	-0.27977					109	64	3	0	0	0	0.03519	1	4547	4547		74.255	16.025	1	1354400	+		49633	21506	34515	34568	55074	55074					-0.0396402093266488
LVDIVKGTN	9	Unmodified	_LVDIVKGTN_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7840270996094	2	479.782025	957.549496	0.82665	0.00039661	3.5821	0.0017186	4.4087	0.0021152	479.7836052724121	96.636	1.3272	96.642	96.353	97.68	0.0065002					74	29	5	0	0	0	0.32811	1	12309	12309		71.877	16.373	1	2246700			49634	5688	34516	34569	55075	55075					0.0690234058599799
LVDIVSYQS	9	Unmodified	_LVDIVSYQS_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF;ENST00000590884.5_1_18:43437816-43458370:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2701416015625	2	512.27149	1022.52843	0.51992	0.00026634	-1.4352	-0.00073523	-0.91531	-0.00046889	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	0.67687	1	13709	13709		47.657	10.498	1	6752000			49635	6257	34517	34570	55076	55076					0.018063304864767815
LVDIVSYQS	9	Unmodified	_LVDIVSYQS_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF;ENST00000590884.5_1_18:43437816-43458370:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2704467773438	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	0.77768	2	13672	13664;13672		40.778	10.937	1	6386000			49636	6257	34517	34570	55077;55078	55078					0.018063304864767815
LVDKHRDKV	9	Unmodified	_LVDKHRDKV_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.7667846679688	2	555.324922	1108.63529	-0.24286	-0.00013486	0.19118	0.00010617	-0.051677	-2.8697E-05	555.3247369053826	52.771	0.78906	52.771	52.513	53.302	0					36	20	3	0	0	0	0.024427	1	5752	5752		51.335	0	1	862630	+		49637	19756	34518	34571	55079	55079					0.08531925491524817
LVDKHRDKV	9	Unmodified	_LVDKHRDKV_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.324922	1108.63529	-0.1815	-0.00010079	0.86335	0.00047944	0.68185	0.00037865	555.3246894243325	52.866	0.62224	52.719	52.326	52.948	-0.14724	-0.0093041	0.00047871	NaN	51.335	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622740	+		49638	19756	34518	34571							0.08531925491524817
LVDLESELL	9	Unmodified	_LVDLESELL_					0	0	0			REV__ENSG00000176563|ENST00000588408|CNTD1	REV__ENSG00000176563|ENST00000588408|CNTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2708129882812	2	515.786973	1029.55939	-1.4302	-0.00073769	0.82773	0.00042693	-0.6025	-0.00031076	515.7865100760868	51.146	0.22386	51.233	51.116	51.339	0.087006					8	5	2	0	0	0	0.024436	1	5330	5330		30.504	6.3009	1	149560	+		49639	27030	34519	34572	55080	55080					0.04579483800716844
LVDLFAEH	8	Unmodified	_LVDLFAEH_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.29437255859375	2	472.247818	942.481082	-0.2101	-9.9219E-05	-2.7212	-0.0012851	-2.9313	-0.0013843	472.2448477921675	40.946	0.31095	40.81	40.597	40.908	-0.13553					10	7	2	0	0	0	0.027866	1	3554	3554		33.516	0	1	56834	+		49640	28427	34520	34573	55081	55081					0.007540960061305668
LVDLRREE	8	Unmodified	_LVDLRREE_					0	0	0			REV__ENSG00000215193|ENST00000399744|PEX26	REV__ENSG00000215193|ENST00000399744|PEX26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.263916015625	2	515.288005	1028.56146	-0.61866	-0.00031879	-0.59568	-0.00030695	-1.2143	-0.00062574	515.2891368600401	29.269	0.45514	29.272	29.014	29.469	0.0031376					22	11	3	0	0	0	0.027866	1	1790	1790		37.159	8.0096	1	116990	+		49641	28802	34521	34574	55082	55082					0.04831957329179204
LVDNRLPLV	9	Unmodified	_LVDNRLPLV_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8182983398438	2	519.818941	1037.62333	0.12518	6.5073E-05	-0.67539	-0.00035108	-0.55021	-0.00028601	519.8186456583804	71.282	0.99471	71.282	70.909	71.904	0					100	25	5	0	0	0	0.6504	1	8613	8613		49.442	1.7842	1	28736000	+		49642	28062	34522	34575	55083	55083					0.10602308748320866
LVDNRLPLV	9	Unmodified	_LVDNRLPLV_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8194580078125	2	519.818941	1037.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.488	1	71.499	70.999	71.999	0.010735								0	0	0	0.29326	1	8588	8588		68.787	2.3575	1		+		49643	28062	34522	34575	55084	55084					0.10602308748320866
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7518005371094	2	506.752933	1011.49131	-0.32049	-0.00016241	0.19494	9.8788E-05	-0.12555	-6.3623E-05	506.75289055380597	67.702	0.66678	67.464	67.201	67.868	-0.23814					35	15	3	0	0	0	0.52323	1	7793	7793		57.811	9.8957	1	780620			49644	2828	34523	34576	55085	55085					-0.01397341059282553
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.752933	1011.49131	0.73263	0.00037126	-0.72592	-0.00036786	0.006709	3.3998E-06	506.75242454950154	67.682	0.46636	67.427	67.194	67.661	-0.25516	-0.013289	-0.00069144	NaN	57.811	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320360			49645	2828	34523	34576							-0.01397341059282553
LVDPSVYGY	9	Unmodified	_LVDPSVYGY_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.752933	1011.49131	-0.14254	-7.2234E-05	0.33973	0.00017216	0.19718	9.9924E-05	506.75274570924626	67.663	0.82603	67.43	66.97	67.797	-0.23375	-0.010505	0.0003886	NaN	57.811	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392340			49646	2828	34523	34576							-0.01397341059282553
LVDQAVEVP	9	Unmodified	_LVDQAVEVP_					0	0	0			REV__ENSG00000109016|ENST00000395511|DHRS7B	REV__ENSG00000109016|ENST00000395511|DHRS7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2667236328125	2	485.266207	968.517862	0.15101	7.328E-05	-0.41639	-0.00020206	-0.26538	-0.00012878	485.2659451555265	67.803	1.3091	67.803	67.408	68.717	0					97	33	4	0	0	0	0.32811	1	8135	8135		71.877	6.4121	1	14818000	+		49647	21774	34524	34577	55086	55086					0.032343478320512986
LVDSQVILVQ	10	Unmodified	_LVDSQVILVQ_					0	0	0		PPM1F|p.G273V|1|0.28|ENSG00000100034|chr22:21931221-21931221|C/A|missense_variant	PPM1F|p.G273V|1|0.28|ENSG00000100034|chr22:21931221-21931221|C/A|missense_variant	PPM1F|p.G273V|1|0.28|ENSG00000100034|chr22:21931221-21931221|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.242919921875	2	557.329339	1112.64412	-0.1234	-6.8777E-05	-0.37843	-0.00021091	-0.50183	-0.00027969	557.3291148146077	54.038	0.6416	53.793	53.525	54.166	-0.2453					30	20	2	0	0	0	0.03519	1	5646	5646		32.812	4.7309	1	2101400			49648	18986	34525	34578	55087	55087					0.0923085433732922
LVDTHKKQI	9	Unmodified	_LVDTHKKQI_					0	0	0		ENST00000558735.1_1_15:44581347-44620963:+|nuORF;ENST00000429162.2_1_15:44581227-44599615:+|nuORF;nc|ENSG00000166734|Q6P4E1-3|GOLM2;nc|ENSG00000166734|Q6P4E1-2|GOLM2;nc|ENSG00000166734|Q6P4E1-5|GOLM2;ENSG00000166734|ENST00000299957|GOLM2	ENST00000558735.1_1_15:44581347-44620963:+|nuORF	ENST00000558735.1_1_15:44581347-44620963:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.2817993164062	2	541.321848	1080.62914	-1.4902	-0.00080668	4.0785	0.0022078	2.5883	0.0014011	541.3241588253533	80.77	0.77113	80.618	80.343	81.114	-0.15168					27	18	2	0	0	0	0.023817	1	9990	9990		60.972	22.218	1	288770			49649	7597	34526	34579	55088	55088					0.09205407259992171
LVDVRALLV	9	Unmodified	_LVDVRALLV_					0	0	0			REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.3247375488281	2	499.32386	996.633166	1.3587	0.00067843	-1.7525	-0.00087507	-0.39382	-0.00019664	499.3229836235811	63.717	1.9239	63.717	63.336	65.26	0					135	52	4	0	0	0	0.16468	1	7442	7442		96.19	5.4138	1	34948000	+		49650	33848	34527	34580	55089	55089					0.1347149675370929
LVDVRALLV	9	Unmodified	_LVDVRALLV_					0	0	0			REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.3243103027344	2	499.32386	996.633166	0.030222	1.509E-05	-0.60524	-0.00030221	-0.57502	-0.00028712	499.3235630930788	63.963	1.8449	63.712	63.372	65.217	-0.25141					120	49	4	0	0	0	0.072054	3	7458	7449;7458;7482		120.62	21.246	1	34182000	+		49651	33848	34527	34580	55090;55091;55092	55091					0.1347149675370929
LVDVRALLV	9	Unmodified	_LVDVRALLV_					0	0	0			REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.3249206542969	2	499.32386	996.633166	1.7703	0.00088394	-2.3345	-0.0011657	-0.56427	-0.00028175	499.3226952178435	63.697	1.7933	63.751	63.41	65.203	0.054104					115	48	4	0	0	0	0.31037	1	7363	7363		74.255	10.048	1	32941000	+		49652	33848	34527	34580	55093	55093					0.1347149675370929
LVDVRALLVE	10	Unmodified	_LVDVRALLVE_					0	0	0			REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.8458862304688	2	563.845156	1125.67576	0.15076	8.5004E-05	-0.65204	-0.00036765	-0.50128	-0.00028264	563.8446421294798	62.856	0.95185	62.91	62.64	63.592	0.054104					59	24	4	0	0	0	0.57594	1	7250	7250		79.713	26.776	1	2718600	+		49653	33848	34528	34581	55094	55094					0.11794847091277916
LVDVRALLVE	10	Unmodified	_LVDVRALLVE_					0	0	0			REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	563.845156	1125.67576	-1.0245	-0.00057763	0.37037	0.00020883	-0.65408	-0.0003688	563.845239523675	62.875	0.87074	62.875	62.651	63.522	0	-0.014201	0.00056764	NaN	79.713	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2526600	+		49654	33848	34528	34581							0.11794847091277916
LVDVRALLVE	10	Unmodified	_LVDVRALLVE_					0	0	0			REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.845156	1125.67576	-0.60599	-0.00034168	0.093621	5.2788E-05	-0.51237	-0.0002889	563.8451173197066	63.123	0.95081	62.883	62.615	63.566	-0.23926	-0.0061903	0.00025554	NaN	79.713	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2570100	+		49655	33848	34528	34581							0.11794847091277916
LVDVRALLVE	10	Unmodified	_LVDVRALLVE_					0	0	0			REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	REV__ENST00000497237.5_1_9:140451208-140459646:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	563.845156	1125.67576	0.15076	8.5004E-05	-0.65204	-0.00036765	-0.50128	-0.00028264	563.8446421294798	62.856	0.95185	62.91	62.64	63.592	0.054104	0.020391	-0.00058533	NaN	79.713	59	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2718600	+		49656	33848	34528	34581							0.11794847091277916
LVEAVQDW	8	Unmodified	_LVEAVQDW_					0	0	0			REV__nc|ENSG00000168610|P40763-3|STAT3	REV__nc|ENSG00000168610|P40763-3|STAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	480.245275	958.475997	-0.71826	-0.00034494	-2.3339	-0.0011208	-3.0521	-0.0014658	480.2439541878201	28.433	0.55021	28.264	28.048	28.598	-0.16897					20	12	3	0	0	0	0.027866	1	1693	1693		27.882	0	1	67237	+		49657	26276	34529	34582	55095	55095					-0.0049020785647826415
LVEEPSGLVK	10	Unmodified	_LVEEPSGLVK_					0	0	0			REV__ENSG00000108786|ENST00000585807|HSD17B1	REV__ENSG00000108786|ENST00000585807|HSD17B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2694702148438	2	535.808239	1069.60193	-1.0035	-0.00053768	1.4443	0.00077387	0.4408	0.00023618	535.8097504577793	29.445	0.31751	29.448	29.314	29.631	0.0031357					9	7	2	0	0	0	0.03519	1	1810	1810		40.778	0	1	34120	+		49658	21762	34530	34583	55096	55096					0.06990878928968414
LVEFREMEFD	10	Unmodified	_LVEFREMEFD_					0	0	0			REV__ENST00000481501.1_1_17:27042816-27043099:-|nuORF	REV__ENST00000481501.1_1_17:27042816-27043099:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.87506103515625	3	438.872673	1313.59619	0.49653	0.00021791	2.6332	0.0011557	3.1298	0.0013736	438.87365415118467	42.363	0.34053	42.363	42.12	42.461	0					14	9	2	0	0	0	0.03519	1	3893	3893		31.634	10.602	1	156640	+		49659	21783	34531	34584	55097	55097					-0.04806587645043692
LVEGTSVKI	9	Unmodified	_LVEGTSVKI_					0	0	0		ANKRD30B|p.A315V|1|0.15|ENSG00000180777|chr18:14763809-14763809|C/T|missense_variant	ANKRD30B|p.A315V|1|0.15|ENSG00000180777|chr18:14763809-14763809|C/T|missense_variant	ANKRD30B|p.A315V|1|0.15|ENSG00000180777|chr18:14763809-14763809|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.2845458984375	2	473.2844	944.554247	0.53751	0.0002544	-1.0265	-0.00048584	-0.48901	-0.00023144	473.28385465175853	83.353	0.50449	83.184	82.905	83.409	-0.16915					28	11	3	0	0	0	0.4752	2	10056	10056;10079		60.972	4.2509	1	725660			49660	95	34532	34585	55098;55099	55098					0.079752247287729
LVEHFHLSG	9	Unmodified	_LVEHFHLSG_					0	0	0			REV__ENST00000266775.13_1_12:104359668-104366780:+|nuORF	REV__ENST00000266775.13_1_12:104359668-104366780:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.33984375	2	519.771991	1037.52943	-0.73375	-0.00038138	-4.1736	-0.0021693	-4.9074	-0.0025507	519.7698153684711	23.311	0.44811	23.387	23.156	23.604	0.076241					16	10	2	0	0	0	0.024457	1	836	836		21.96	0	1	99988	+		49661	29764	34533	34586	55100	55100					0.012165896460373915
LVEIIVDTE	9	Unmodified	_LVEIIVDTE_					0	0	0		PRX|p.E22D|1|0.26|ENSG00000105227|chr19:40403824-40403824|C/G|missense_variant	PRX|p.E22D|1|0.26|ENSG00000105227|chr19:40403824-40403824|C/G|missense_variant	PRX|p.E22D|1|0.26|ENSG00000105227|chr19:40403824-40403824|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8097534179688	2	515.786973	1029.55939	-0.82748	-0.0004268	1.0753	0.00055463	0.24784	0.00012783	515.7863312865982	43.633	0.46849	43.489	43.241	43.71	-0.14471					16	12	2	0	0	0	0.024487	1	4073	4073		24.203	0	1	70927			49662	19001	34534	34587	55101	55101					0.04579483800716844
LVEKFTDY	8	Unmodified	_LVEKFTDY_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.78216552734375	2	507.760758	1013.50696	-0.29196	-0.00014825	-1.2795	-0.00064966	-1.5714	-0.00079791	507.76027711024165	42.042	0.2068	41.812	41.725	41.932	-0.2303					7	5	2	0	0	0	0.027866	1	3737	3737		25.45	3.7478	1	42785	+		49663	19838	34535	34588	55102	55102					0.0007494545774306971
LVEKKQINV	9	Unmodified	_LVEKKQINV_					0	0	0		ENST00000510012.1_1_4:57248591-57250465:-|nuORF	ENST00000510012.1_1_4:57248591-57250465:-|nuORF	ENST00000510012.1_1_4:57248591-57250465:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3182373046875	2	535.832049	1069.64954	-0.74006	-0.00039655	0.89604	0.00048013	0.15598	8.3578E-05	535.8322536328752	79.323	1.4532	79.341	78.86	80.313	0.018677					72	34	3	0	0	0	0.024511	1	9889	9889		25.574	0	1	270560			49664	15815	34536	34589	55103	55103					0.11750577919792704
LVEKRLLI	8	Unmodified	_LVEKRLLI_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.795166015625	2	492.334227	982.653902	-0.48928	-0.00024089	0.4238	0.00020865	-0.06548	-3.2238E-05	492.3343641413039	25.031	0.37418	25.031	24.874	25.248	0					11	8	2	0	0	0	0.027866	1	1142	1142		33.516	0	1	48929	+		49665	25739	34537	34590	55104	55104					0.1618808713337785
LVELLTEVY	9	Unmodified	_LVELLTEVY_					0	0	0			REV__ENSG00000176563|ENST00000588408|CNTD1	REV__ENSG00000176563|ENST00000588408|CNTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8058471679688	2	539.805165	1077.59578	-0.012751	-6.8832E-06	0.5374	0.00029009	0.52465	0.00028321	539.8052212849636	103.04	0.56392	102.91	102.67	103.23	-0.12724					24	13	3	0	0	0	0.83071	1	12817	12817		37.159	0	1	300240	+		49666	27030	34538	34591	55105	55105					0.060083606974330905
LVELLTEVY	9	Unmodified	_LVELLTEVY_					0	0	0			REV__ENSG00000176563|ENST00000588408|CNTD1	REV__ENSG00000176563|ENST00000588408|CNTD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	539.805165	1077.59578	-0.012751	-6.8832E-06	0.5374	0.00029009	0.52465	0.00028321	539.8052212849636	103.04	0.56392	102.91	102.67	103.23	-0.12724	0.25645	0.0018109	NaN	37.159	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300240	+		49667	27030	34538	34591							0.060083606974330905
LVELLTEVY	9	Unmodified	_LVELLTEVY_					0	0	0			REV__ENSG00000176563|ENST00000588408|CNTD1	REV__ENSG00000176563|ENST00000588408|CNTD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.805165	1077.59578	-0.30243	-0.00016325	-5.8221	-0.0031428	-6.1245	-0.003306	539.8021840807132	102.65	0.26816	102.52	102.32	102.59	-0.12666	-0.13421	-0.0050549	NaN	37.159	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33269	+		49668	27030	34538	34591							0.060083606974330905
LVELLTEVY	9	Unmodified	_LVELLTEVY_					0	0	0			REV__ENSG00000176563|ENST00000588408|CNTD1	REV__ENSG00000176563|ENST00000588408|CNTD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.805165	1077.59578	-0.65658	-0.00035442	-6.8484	-0.0036968	-7.505	-0.0040512	539.8021465530275	102.7	0.26057	102.53	102.38	102.64	-0.17034	-0.12224	-0.0061629	NaN	37.159	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42148	+		49669	27030	34538	34591							0.060083606974330905
LVELTLQTV	9	Unmodified	_LVELTLQTV_					0	0	0			REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.304931640625	2	508.305332	1014.59611	-0.22438	-0.00011405	-0.18798	-9.5553E-05	-0.41236	-0.00020961	508.30510884182195	98.357	0.98793	98.192	98	98.988	-0.16521					51	22	3	0	0	0	0.70156	1	12206	12206		45.972	1.8554	1	513780	+		49670	27718	34539	34592	55106	55106					0.08939780417279053
LVEMGFLC	8	Unmodified	_LVEMGFLC_					0	0	0		ENST00000436679.2_1_11:73840908-73844654:-|nuORF	ENST00000436679.2_1_11:73840908-73844654:-|nuORF	ENST00000436679.2_1_11:73840908-73844654:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.15582275390625	2	456.2219	910.429246	-0.19115	-8.7207E-05	1.4623	0.00066715	1.2712	0.00057994	456.2225344131776	40.26	0.78597	40.035	39.62	40.406	-0.22501					26	20	2	0	0	0	0.027866	1	3421	3421		21.702	7.0382	1	238860			49671	14280	34540	34593	55107	55107					-0.029551070036291094
LVEMGFLC	8	Unmodified	_LVEMGFLC_					0	0	0		ENST00000436679.2_1_11:73840908-73844654:-|nuORF	ENST00000436679.2_1_11:73840908-73844654:-|nuORF	ENST00000436679.2_1_11:73840908-73844654:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.2219	910.429246	-0.34149	-0.00015579	1.7432	0.00079531	1.4018	0.00063951	456.2225514291007	40.091	0.47836	39.941	39.746	40.224	-0.1497	-0.046603	0.00013768	NaN	21.702	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205700			49672	14280	34540	34593							-0.029551070036291094
LVEQGGVK	8	Unmodified	_LVEQGGVK_					0	0	0		nc|ENSG00000144837|Q53H76-4|PLA1A;nc|ENSG00000144837|Q53H76-2|PLA1A;nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A	nc|ENSG00000144837|Q53H76-4|PLA1A	nc|ENSG00000144837|Q53H76-4|PLA1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2121276855469	2	415.242535	828.470518	-0.073509	-3.0524E-05	0.40683	0.00016893	0.33332	0.00013841	415.2423023419009	27.64	0.56245	27.627	27.277	27.84	-0.012983					21	14	2	0	0	0	0.027866	1	1550	1550		11.511	0	1	80440			49673	5775	34541	34594	55108	55108					0.049421133517171256
LVEREPSH	8	Unmodified	_LVEREPSH_					0	0	0			REV__ENSG00000164161|ENST00000296575|HHIP	REV__ENSG00000164161|ENST00000296575|HHIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.7898864746094	2	483.753798	965.493044	-0.095676	-4.6284E-05	0.56159	0.00027167	0.46592	0.00022539	483.7539741944922	36.429	0.41492	36.224	35.987	36.402	-0.20518					25	10	3	0	0	0	0.027866	1	2878	2878		55.504	0	1	579000	+		49674	25708	34542	34595	55109	55109					0.008917127493305088
LVERFCLF	8	Unmodified	_LVERFCLF_					0	0	0			REV__ENST00000509432.1_1_5:110091132-110091699:+|nuORF	REV__ENST00000509432.1_1_5:110091132-110091699:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7698364257812	2	513.775688	1025.53682	-0.43169	-0.00022179	0.46705	0.00023996	0.035355	1.8164E-05	513.7755659422224	30.964	0.75626	30.975	30.458	31.214	0.011799					16	7	3	0	0	0	0.027866	1	2047	2047		14.664	5.8418	1	156080	+		49675	34085	34543	34596	55110	55110					0.025076059220964453
LVERFCLF	8	Unmodified	_LVERFCLF_					0	0	0			REV__ENST00000509432.1_1_5:110091132-110091699:+|nuORF	REV__ENST00000509432.1_1_5:110091132-110091699:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.775688	1025.53682	-1.1597	-0.00059584	0.80866	0.00041547	-0.35106	-0.00018037	513.7760616952861	31.032	0.749	31.032	30.508	31.257	0	0.1369	0.00016699	NaN	35.201	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187440	+		49676	34085	34543	34596							0.025076059220964453
LVERFCLF	8	Unmodified	_LVERFCLF_					0	0	0			REV__ENST00000509432.1_1_5:110091132-110091699:+|nuORF	REV__ENST00000509432.1_1_5:110091132-110091699:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.775688	1025.53682	-0.94891	-0.00048753	0.61697	0.00031699	-0.33194	-0.00017054	513.7759016165668	30.605	0.78829	30.679	30.129	30.917	0.074314	-0.21671	-2.9983E-05	NaN	35.201	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242830	+		49677	34085	34543	34596							0.025076059220964453
LVERILTSW	9	Unmodified	_LVERILTSW_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7578125	2	558.824224	1115.63389	0.18044	0.00010083	-0.75042	-0.00041935	-0.56998	-0.00031852	558.8239266027771	71.722	0.52065	71.46	71.2	71.72	-0.26199					20	12	2	0	0	0	0.024495	1	8391	8391		42.396	20.436	1	356110			49678	2631	34544	34597	55111	55111					0.08070291402736984
LVERNIIY	8	Unmodified	_LVERNIIY_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.D2520H|1|0.28|ENSG00000205038|chr8:109464390-109464390|G/C|missense_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.8443908691406	2	510.297842	1018.58113	0.2046	0.00010441	-3.9674	-0.0020246	-3.7628	-0.0019202	510.2958615404118	76.75	0.63678	76.499	76.186	76.823	-0.25162					19	14	2	0	0	0	0.027866	1	9083	9083		85.359	8.5128	1	116920			49679	10401	34545	34598	55112	55112					0.07258333339950696
LVERVVKAP	9	Unmodified	_LVERVVKAP_					0	0	0			REV__nc|ENSG00000113161|P04035-2|HMGCR	REV__nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.26605224609375	2	505.821484	1009.62842	-1.0156	-0.00051373	0.14171	7.168E-05	-0.87392	-0.00044205	505.82145947014305	62.641	0.48674	62.641	62.409	62.896	0					26	11	3	0	0	0	0.024381	1	7303	7303		45.952	10.334	1	760030	+		49680	22045	34546	34599	55113	55113					0.12398612610934379
LVESIVSQV	9	Unmodified	_LVESIVSQV_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7517395019531	2	487.281857	972.549162	-0.477	-0.00023244	-0.14832	-7.2274E-05	-0.62533	-0.00030471	487.28161494093723	75.834	1.3678	75.59	75.266	76.634	-0.24454					67	35	3	0	0	0	0.023007	1	9241	9241		87.754	8.0417	1	742460	+		49681	22782	34547	34600	55114	55114					0.06178920866148019
LVESKTGKL	9	Unmodified	_LVESKTGKL_					0	0	0			REV__nc|ENSG00000162971|A2RUC4-2|TYW5	REV__nc|ENSG00000162971|A2RUC4-2|TYW5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7972106933594	2	487.797675	973.580796	-1.0216	-0.00049831	-0.23908	-0.00011662	-1.2606	-0.00061494	487.7974619641112	75.539	1.6042	75.539	75.155	76.759	0					110	41	4	0	0	0	0.77768	1	9287	9287		40.778	0.20554	1	8547400	+		49682	25514	34548	34601	55115	55115					0.09294913620101397
LVESKTGKL	9	Unmodified	_LVESKTGKL_					0	0	0			REV__nc|ENSG00000162971|A2RUC4-2|TYW5	REV__nc|ENSG00000162971|A2RUC4-2|TYW5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79815673828125	2	487.797675	973.580796	-0.05951	-2.9029E-05	-1.0578	-0.00051597	-1.1173	-0.000545	487.7970494161524	75.582	1.604	75.592	75.211	76.815	0.010368					111	41	4	0	0	0	0.29158	1	9200	9200		76.774	5.4784	1	8631500	+		49683	25514	34548	34601	55116	55116					0.09294913620101397
LVETGKKSP	9	Unmodified	_LVETGKKSP_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.763671875	2	479.782025	957.549496	0.04764	2.2857E-05	3.8751	0.0018592	3.9228	0.0018821	479.78448797604983	73.04	0.16243	73.04	72.91	73.072	0					5	3	2	0	0	0	0.024457	1	8888	8888		21.96	0	1	40392			49684	809	34549	34602	55117	55117					0.06902340586009359
LVETLEKLP	9	Unmodified	_LVETLEKLP_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3294677734375	2	521.313158	1040.61176	-0.42266	-0.00022034	1.0611	0.00055314	0.6384	0.00033281	521.3133574023784	69.69	0.53207	69.69	69.383	69.915	0					17	12	2	0	0	0	0.024	1	8394	8394		65.803	5.5092	1	176210			49685	9997	34550	34603	55118	55118					0.09308066934318049
LVEVAEHF	8	Unmodified	_LVEVAEHF_					0	0	0			REV__ENST00000537473.2_1_12:57057993-57058044:-|nuORF	REV__ENST00000537473.2_1_12:57057993-57058044:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7735595703125	2	472.247818	942.481082	0.16122	7.6135E-05	-4.2008	-0.0019838	-4.0395	-0.0019077	472.24568220934134	22.221	0.98047	22.221	21.868	22.848	0					55	20	4	0	0	0	0.027866	1	831	831		8.8223	0	1	684890	+		49686	34700	34551	34604	55119	55119					0.007540960061305668
LVEVIVEP	8	Unmodified	_LVEVIVEP_					0	0	0			REV__ENST00000441115.5_1_3:50012785-50103056:+|nuORF	REV__ENST00000441115.5_1_3:50012785-50103056:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.5613098144531	2	449.268219	896.521884	-0.40948	-0.00018396	2.1018	0.00094429	1.6924	0.00076033	449.269044014421	48.231	0.58222	48.133	47.892	48.474	-0.097553					36	15	3	0	0	0	0.027866	1	4735	4735		25.45	0	1	1209000	+		49687	19780	34552	34605	55120	55120					0.06948437325752366
LVEVRALSM	9	Unmodified	_LVEVRALSM_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2777404785156	2	509.291702	1016.56885	-0.18359	-9.3501E-05	-3.7469	-0.0019083	-3.9305	-0.0020018	509.2893614834069	45.585	0.58686	45.486	45.189	45.776	-0.09856					20	16	2	0	0	0	0.024541	1	4380	4380		7.1934	0	1	165800			49688	5068	34553	34606	55121	55121					0.061229736052496264
LVEVTFSVK	9	Unmodified	_LVEVTFSVK_					0	0	0			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2354736328125	2	511.30005	1020.58555	-0.12241	-6.2589E-05	0.1022	5.2253E-05	-0.020216	-1.0337E-05	511.2998593399686	57.807	0.49665	57.617	57.332	57.829	-0.19018					22	12	3	0	0	0	0.024457	1	6305	6305		21.96	0	1	421060	+		49689	21032	34554	34607	55122	55122					0.07607797762864266
LVEVVQLHTL	10	Unmodified	_LVEVVQLHTL_					0	0	0			REV__ENSG00000081026|ENST00000307546|MAGI3	REV__ENSG00000081026|ENST00000307546|MAGI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8431396484375	2	575.845156	1149.67576	-0.82546	-0.00047534	-2.9075	-0.0016743	-3.7329	-0.0021496	575.8433114529906	88.92	2.4021	88.92	87.573	89.975	0					191	57	4	0	0	0	1.0393	1	11177	11177		40.778	1.5253	1	1520800	+		49690	20671	34555	34608	55123	55123					0.10690847091291289
LVEYSQDVL	9	Unmodified	_LVEYSQDVL_					0	0	0		ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	MSMS	OPSCC_40_ClassI_Rep-3	6	533.2744750976562	2	533.276772	1064.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.12	1	105.96	105.46	106.46	-0.16132								0	0	0	0.63578	1	13197	13197		34.173	0.65696	1				49691	2016	34556	34609	55124	55124					0.009303131409069465
LVFAFFII	8	Unmodified	_LVFAFFII_					0	0	0			REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2814636230469	2	485.29404	968.573526	-0.16447	-7.9816E-05	0.058813	2.8542E-05	-0.10566	-5.1274E-05	485.2939103160251	89.402	0.50183	89.418	89.174	89.676	0.015907					17	11	2	0	0	0	0.027866	1	11230	11230		43.626	0	1	149020	+		49692	21851	34557	34610	55125	55125					0.08798225810323856
LVFDALIYI	9	Unmodified	_LVFDALIYI_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8136596679688	2	533.812793	1065.61103	-0.41025	-0.000219	0.637	0.00034004	0.22675	0.00012104	533.8128275898247	104.01	1.0144	104.01	103.57	104.58	0.0031357					45	21	4	0	0	0	0.14199	1	13311	13311		101.21	12.569	1	400730			49693	4804	34558	34611	55126	55126					0.08085272285256906
LVFDALIYI	9	Unmodified	_LVFDALIYI_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.8139038085938	2	533.812793	1065.61103	-0.80338	-0.00042886	0.60572	0.00032334	-0.19767	-0.00010552	533.8129979702742	103.85	0.77637	103.72	103.45	104.23	-0.12928					49	21	3	0	0	0	0.64155	1	12950	12950		50.025	0	1	396330			49694	4804	34558	34611	55127	55127					0.08085272285256906
LVFDKITQL	9	Unmodified	_LVFDKITQL_					0	0	0		nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1;ENST00000495195.5_1_1:15707786-15709690:+|nuORF;ENST00000477846.5_1_1:15707235-15714865:+|nuORF	nc|ENSG00000142621|B1AJZ9-4|FHAD1	nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7911376953125	2	538.82115	1075.62775	-0.72013	-0.00038802	-0.23988	-0.00012925	-0.96001	-0.00051727	538.8208250820104	66.419	0.3768	66.138	65.904	66.281	-0.28148					19	9	3	0	0	0	0.024466	1	7856	7856		39.253	5.0803	1	772080			49695	5577	34559	34612	55128	55128					0.0929577317122039
LVFERFDN	8	Unmodified	_LVFERFDN_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.316650390625	2	520.263999	1038.51345	-1.3247	-0.0006892	-2.0518	-0.0010675	-3.3765	-0.0017567	520.2627022222504	31.062	1.1514	31.062	30.838	31.989	0					46	27	4	0	0	0	0.027866	1	2163	2163		38.806	0	1	1059200	+		49696	23118	34560	34613	55129	55129					-0.0042711659086762666
LVFERFDN	8	Unmodified	_LVFERFDN_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.263999	1038.51345	-0.51308	-0.00026693	-3.4058	-0.0017719	-3.9189	-0.0020389	520.2622535917194	30.95	0.54325	30.962	30.627	31.17	0.011797	0.063107	-0.00097083	NaN	38.806	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1088700	+		49697	23118	34560	34613							-0.0042711659086762666
LVFERFDN	8	Unmodified	_LVFERFDN_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.263999	1038.51345	-0.85441	-0.00044452	-2.7404	-0.0014257	-3.5948	-0.0018703	520.2623225801158	30.573	1.3995	30.647	30.212	31.612	0.074314	-0.25127	-0.00027843	NaN	38.806	65	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1118400	+		49698	23118	34560	34613							-0.0042711659086762666
LVFERFDN	8	Unmodified	_LVFERFDN_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.263999	1038.51345	-0.59975	-0.00031203	2.1348	0.0011107	1.5351	0.00079865	520.2649591118741	31.136	0.488	30.895	30.585	31.073	-0.24109	-0.0037291	0.0047944	NaN	38.806	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215760	+		49699	23118	34560	34613							-0.0042711659086762666
LVFERFDN	8	Unmodified	_LVFERFDN_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.263999	1038.51345	-0.21222	-0.00011041	1.5858	0.00082502	1.3736	0.00071461	520.26450833798	31.097	0.48594	30.912	30.576	31.062	-0.18503	0.013008	0.0042231	NaN	38.806	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143300	+		49700	23118	34560	34613							-0.0042711659086762666
LVFERFDN	8	Unmodified	_LVFERFDN_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.263999	1038.51345	-0.096923	-5.0425E-05	1.811	0.00094221	1.7141	0.00089179	520.2644527209335	31.067	0.40045	30.914	30.724	31.124	-0.15231	0.015825	0.0044575	NaN	38.806	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172510	+		49701	23118	34560	34613							-0.0042711659086762666
LVFEVELFE	9	Unmodified	_LVFEVELFE_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7986450195312	2	562.79734	1123.58013	0.37562	0.0002114	2.3763	0.0013374	2.752	0.0015488	562.7985569630558	101.74	0.79967	101.61	101.27	102.07	-0.13156					61	18	4	0	0	0	0.52323	1	12637	12637		57.811	4.4598	1	333420			49702	740	34561	34614	55130	55130					0.023280741803773708
LVFFFHLEI	9	Unmodified	_LVFFFHLEI_					0	0	0		ENST00000570308.5_1_16:55539636-55539948:+|nuORF	ENST00000570308.5_1_16:55539636-55539948:+|nuORF	ENST00000570308.5_1_16:55539636-55539948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.3049926757812	2	582.826235	1163.63792	-1.7075	-0.00099518	-2.1158	-0.0012331	-3.8233	-0.0022283	582.8246619051414	62.976	0.53275	62.737	62.492	63.025	-0.23926					19	12	2	0	0	0	0.023528	1	7287	7287		60.294	17.819	1	207240			49703	17028	34562	34615	55131	55131					0.06264380896459443
LVFFFIYPL	9	Unmodified	_LVFFFIYPL_					0	0	0			REV__ENST00000276925.6_1_9:22005775-22005913:-|nuORF	REV__ENST00000276925.6_1_9:22005775-22005913:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.2890625	2	579.833529	1157.6525	-0.25562	-0.00014822	1.2493	0.00072441	0.99372	0.00057619	579.8342139911904	79.353	0.42033	79.203	79.067	79.487	-0.15051					15	9	2	0	0	0	0.024475	1	9464	9464		14.664	0	1	91543	+		49704	29855	34563	34616	55132	55132					0.0799845304459268
LVFFLNET	8	Unmodified	_LVFFLNET_					0	0	0			REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.27276611328125	2	491.765843	981.517133	-1.0916	-0.00053682	-2.7617	-0.0013581	-3.8533	-0.0018949	491.764437791623	55.451	0.95319	55.549	55.148	56.102	0.098011					51	25	3	0	0	0	0.027866	1	6110	6110		14.664	0	1	928510	+		49705	34166	34564	34617	55133	55133					0.02563553182983469
LVFFPLIL	8	Unmodified	_LVFFPLIL_					0	0	0		ENST00000479413.1_1_9:74526474-74526639:+|nuORF	ENST00000479413.1_1_9:74526474-74526639:+|nuORF	ENST00000479413.1_1_9:74526474-74526639:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2666015625	2	481.30969	960.604826	-0.18841	-9.0683E-05	-4.3716	-0.0021041	-4.56	-0.0021948	481.30743188368336	45.639	0.62871	45.387	45.157	45.786	-0.25252					29	17	2	0	0	0	0.027866	1	4368	4368		5.0869	0	1	509740			49706	15170	34565	34618	55134	55134					0.1229479884441389
LVFGAVQSHN	10	Unmodified	_LVFGAVQSHN_					0	0	0			REV__ENSG00000171014|ENST00000307033|OR4D5	REV__ENSG00000171014|ENST00000307033|OR4D5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.33154296875	2	536.282723	1070.55089	-0.21412	-0.00011483	-2.0074	-0.0010765	-2.2215	-0.0011914	536.2819739397978	46.651	0.1354	46.554	46.473	46.608	-0.096649					5	3	2	0	0	0	0.03519	1	4522	4522		47.657	24.615	1	263370	+		49707	26530	34566	34619	55135	55135					0.01843974674761739
LVFGPQRR	8	Unmodified	_LVFGPQRR_					0	0	0		ENST00000595618.5_2_19:17323164-17323401:+|nuORF	ENST00000595618.5_2_19:17323164-17323401:+|nuORF	ENST00000595618.5_2_19:17323164-17323401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.79095458984375	2	486.790518	971.566484	-0.97284	-0.00047357	1.0013	0.00048743	0.028463	1.3855E-05	486.79080649089747	37.597	0.71998	37.378	37.114	37.834	-0.2195					61	18	5	0	0	0	0.95417	1	3019	3019		44.531	3.9584	1	2567000			49708	17422	34567	34620	55136	55136					0.0795630598245225
LVFHDVEPY	9	Unmodified	_LVFHDVEPY_					0	0	0			REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8154907226562	2	559.779482	1117.54441	-0.39217	-0.00021953	-3.2292	-0.0018076	-3.6214	-0.0020272	559.7778331069354	80.938	0.12106	80.792	80.692	80.813	-0.146					4	2	2	0	0	0	0.024381	1	9702	9702		45.952	1.8352	1	31709	+		49709	25733	34568	34621	55137	55137					-0.009659632766215509
LVFITWINL	9	Unmodified	_LVFITWINL_					0	0	0			REV__ENST00000536663.5_1_12:122975500-122984530:-|nuORF	REV__ENST00000536663.5_1_12:122975500-122984530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.8157958984375	2	559.83406	1117.65357	0.28991	0.0001623	1.582	0.00088565	1.8719	0.001048	559.8331991903729	80.895	0.57085	80.688	80.257	80.828	-0.20633					16	13	2	0	0	0	0.024506	1	9694	9694		30.504	5.9844	1	270440	+		49710	34689	34569	34622	55138	55138					0.09944667413492425
LVFKEKLIIWK	11	Unmodified	_LVFKEKLIIWK_					0	0	0		NUP133|p.C119F|1|0.47|ENSG00000069248|chr1:229502048-229502048|C/A|missense_variant	NUP133|p.C119F|1|0.47|ENSG00000069248|chr1:229502048-229502048|C/A|missense_variant	NUP133|p.C119F|1|0.47|ENSG00000069248|chr1:229502048-229502048|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.9708251953125	3	472.970758	1415.89044	-0.11653	-5.5115E-05	0.73097	0.00034573	0.61444	0.00029061	472.9710320575272	49.257	1.3974	49.075	48.773	50.17	-0.18206					114	36	5	0	0	0	1.0788	1	4953	4953		17.167	3.6588	1	6253400			49711	18896	34570	34623	55139	55139					0.19913393907017962
LVFLLAKT	8	Unmodified	_LVFLLAKT_					0	0	0			REV__nc|ENSG00000060982|P54687-2|BCAT1	REV__nc|ENSG00000060982|P54687-2|BCAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2518615722656	2	452.796946	903.57934	0.33955	0.00015375	-0.7494	-0.00033933	-0.40985	-0.00018558	452.7964408634566	75.034	0.34016	74.855	74.685	75.026	-0.17905					12	7	2	0	0	0	0.027866	1	8848	8848		21.702	1.2205	1	56604	+		49712	20255	34571	34624	55140	55140					0.12369324321991826
LVFLMLDLV	9	Unmodified	_LVFLMLDLV_					0	0	0			REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8172607421875	2	531.817021	1061.61949	0.30294	0.00016111	-0.91839	-0.00048842	-0.61545	-0.00032731	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.97516	1	11059	11059		25.45	0	1	3405600	+		49713	33706	34572	34625	55141	55141					0.09114502930242452
LVFLRSGLL	9	Unmodified	_LVFLRSGLL_					0	0	0		ENST00000489980.5_1_2:85922428-85922470:+|nuORF	ENST00000489980.5_1_2:85922428-85922470:+|nuORF	ENST00000489980.5_1_2:85922428-85922470:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.3263244628906	2	509.326402	1016.63825	-0.51257	-0.00026106	0.059133	3.0118E-05	-0.45344	-0.00023095	509.3263913018525	77.85	0.73907	77.865	77.536	78.275	0.015907					56	17	4	0	0	0	0.55828	1	9534	9534		55.504	2.1528	1	6039200			49714	15424	34573	34626	55142	55142					0.13059800616315442
LVFLSYFL	8	Unmodified	_LVFLSYFL_					0	0	0			REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	REV__ENST00000566392.5_1_16:67336668-67360655:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2900390625	2	501.288954	1000.56336	0.26855	0.00013462	2.5059	0.0012562	2.7745	0.0013908	501.29013148905653	98.06	1.8047	98.07	97.728	99.533	0.010239					61	41	2	0	0	0	0.95417	1	12507	12507		44.531	7.5026	1	1873800	+		49715	35300	34574	34627	55143	55143					0.06309618085072088
LVFMHHNF	8	Unmodified	_LVFMHHNF_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6;REV__ENSG00000006788|ENST00000252172|MYH13;REV__ENSG00000109063|ENST00000583535|MYH3;REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000109061|ENST00000226207|MYH1	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7323608398438	2	522.75783	1043.50111	-1.433	-0.00074911	3.1356	0.0016392	1.7026	0.00089006	522.7593955266572	38.727	0.40769	38.563	38.285	38.693	-0.16458					23	10	3	0	0	0	0.027866	1	3235	3235		26.796	8.4717	1	296530	+		49716	19848;28330;21776;22814;23337;21775	34575	34628	55144	55144					-0.018904315349118406
LVFPAENTV	9	Unmodified	_LVFPAENTV_					0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2269287109375	2	495.26875	988.522947	-0.25472	-0.00012615	2.4206	0.0011989	2.1659	0.0010727	495.2714141526167	38.754	0.41496	38.754	38.555	38.97	0					15	10	2	0	0	0	0.024427	1	3245	3245		34.173	12.213	1	115700	+		49717	19383	34576	34629	55145	55145					0.02822651694657452
LVFPNKET	8	Unmodified	_LVFPNKET_					0	0	0		nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-6|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB;ENSG00000073605|ENST00000418519|GSDMB	nc|ENSG00000073605|Q8TAX9-2|GSDMB	nc|ENSG00000073605|Q8TAX9-2|GSDMB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2662048339844	2	474.263468	946.512382	2.7279	0.0012937	-1.5244	-0.00072298	1.2034	0.00057075	474.2632251845452	74.217	0.29804	74.217	74.042	74.34	0					9	6	2	0	0	0	0.027866	1	9054	9054		20.482	0	1	170930			49718	1511	34577	34630	55146	55146					0.03698669040238656
LVFRITTT	8	Unmodified	_LVFRITTT_					0	0	0		ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7869873046875	2	475.78711	949.559667	0.737	0.00035065	-0.87543	-0.00041652	-0.13843	-6.5863E-05	475.7866224351529	85.75	2.0796	85.6	84.582	86.661	-0.14967					104	48	4	0	0	0	1.0338	1	10421	10421		31.955	0	1	4960100			49719	12989	34578	34631	55147	55147					0.08286948311206288
LVFRITTT	8	Unmodified	_LVFRITTT_					0	0	0		ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.78741455078125	2	475.78711	949.559667	0.36201	0.00017224	-0.46926	-0.00022327	-0.10725	-5.1028E-05	475.7868325295316	85.757	1.4476	85.619	84.908	86.356	-0.13752					87	33	4	0	0	0	1.0338	1	10393	10393		31.955	6.5047	1	4488600			49720	12989	34578	34631	55148	55148					0.08286948311206288
LVFSTETIN	9	Unmodified	_LVFSTETIN_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2692260742188	2	512.27149	1022.52843	-0.23912	-0.0001225	-0.81194	-0.00041593	-1.0511	-0.00053843	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	0.83071	2	13558	13558;13661		37.159	6.2903	1	6463600	+		49721	25763	34579	34632	55149;55150	55149					0.018063304864767815
LVFSTETIN	9	Unmodified	_LVFSTETIN_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2749633789062	2	512.27149	1022.52843	0.37164	0.00019038	-2.4042	-0.0012316	-2.0325	-0.0010412	512.270084783333	100.79	0.68661	100.66	100.55	101.24	-0.12556					28	18	2	0	0	0	0.94809	1	12532	12532		29.15	0	1	133330	+		49722	25763	34579	34632	55151	55151					0.018063304864767815
LVFSTETIN	9	Unmodified	_LVFSTETIN_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.27149	1022.52843	-0.15488	-7.9342E-05	-4.0399	-0.0020695	-4.1948	-0.0021489	512.270092042345	100.31	0.37808	100.32	100.1	100.47	0.010109	-0.13332	-0.0014414	NaN	29.15	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133330	+		49723	25763	34579	34632							0.018063304864767815
LVFSTETIN	9	Unmodified	_LVFSTETIN_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.27149	1022.52843	0.0011711	5.9993E-07	-2.4174	-0.0012384	-2.4162	-0.0012378	512.2705282694865	100.39	0.44289	100.39	100.21	100.65	-0.0050888	-0.070398	0.00022092	NaN	29.15	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146480	+		49724	25763	34579	34632							0.018063304864767815
LVFSTETIN	9	Unmodified	_LVFSTETIN_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	512.27149	1022.52843	0.37164	0.00019038	-2.4042	-0.0012316	-2.0325	-0.0010412	512.270084783333	100.79	0.68661	100.66	100.55	101.24	-0.12556	0.20371	0.00023447	NaN	29.15	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133330	+		49725	25763	34579	34632							0.018063304864767815
LVFSVLWAL	9	Unmodified	_LVFSVLWAL_					0	0	0			REV__nc|ENSG00000168539|P11229-2|CHRM1	REV__nc|ENSG00000168539|P11229-2|CHRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.3114013671875	2	524.315503	1046.61645	-1.1636	-0.00061009	-3.0039	-0.001575	-4.1675	-0.0021851	524.3139743647313	73.243	1.977	73.243	72.74	74.717	0					163	48	5	0	0	0	0.36105	1	9020	9020		68.485	2.6815	1	37349000	+		49726	26273	34580	34633	55152	55152					0.09500995867733764
LVFTRKEDL	9	Unmodified	_LVFTRKEDL_					0	0	0		ENSG00000133561|ENST00000328902|GIMAP6;nc|ENSG00000133561|Q6P9H5-2|GIMAP6;GIMAP6|p.T158N|1|0.53|ENSG00000133561|chr7:150628125-150628125|G/T|missense_variant	ENSG00000133561|ENST00000328902|GIMAP6	ENSG00000133561|ENST00000328902|GIMAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2660522460938	2	560.821681	1119.62881	0.62208	0.00034887	-0.083949	-4.708E-05	0.53813	0.00030179	560.8216029021843	59.642	0.50077	59.466	59.24	59.741	-0.1761					34	12	4	0	0	0	0.0242	1	6602	6602		60.118	0	1	973540			49727	4714	34581	34634	55153	55153					0.07377987540121467
LVFVAVEKD	9	Unmodified	_LVFVAVEKD_					0	0	0			REV__ENST00000275364.7_1_7:2768995-2769262:-|nuORF	REV__ENST00000275364.7_1_7:2768995-2769262:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.78497314453125	2	510.292225	1018.5699	-0.3399	-0.00017345	-0.59595	-0.00030411	-0.93585	-0.00047756	510.2913978281171	57.436	0.5687	57.436	57.227	57.796	0					39	14	4	0	0	0	0.024263	1	6495	6495		51.335	19.806	1	2864900	+		49728	29845	34582	34635	55154	55154					0.06135511245804537
LVFVGPDASNV	11	Unmodified	_LVFVGPDASNV_					0	0	0			REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25	REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.298828125	2	559.298039	1116.58152	1.0928	0.0006112	2.6338	0.0014731	3.7266	0.0020843	559.2996732802944	97.763	0.477	97.639	97.372	97.849	-0.12368					17	10	2	0	0	0	0.96599	1	12095	12095		44.377	2.9506	1	140880	+		49729	24608	34583	34636	55155	55155					0.027897082691197284
LVFVIWIFVF	10	Unmodified	_LVFVIWIFVF_					0	0	0			REV__ENST00000309395.6_1_4:71847778-71847925:+|nuORF	REV__ENST00000309395.6_1_4:71847778-71847925:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.882568359375	2	641.883553	1281.75255	1.496	0.00096027	-3.284	-0.0021079	-1.788	-0.0011477	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	1.0812	1	12304	12304		35.201	6.0307	1	2979200	+		49730	30161	34584	34637	55156	55156					0.12294690378371342
LVFVLIVLV	9	Unmodified	_LVFVLIVLV_					0	0	0			REV__ENSG00000215262|ENST00000399881|KCNU1	REV__ENSG00000215262|ENST00000399881|KCNU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3019104003906	2	507.851722	1013.68889	-0.92822	-0.0004714	-3.2861	-0.0016688	-4.2143	-0.0021402	507.8499331443636	55.624	0.48128	55.722	55.484	55.965	0.098015					28	12	3	0	0	0	0.024389	1	6095	6095		29.842	8.1392	1	441540	+		49731	28803	34585	34638	55157	55157					0.18259329941315627
LVFVSFLVN	9	Unmodified	_LVFVSFLVN_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7896118164062	2	519.305136	1036.59572	-1.1385	-0.00059124	-3.585	-0.0018617	-4.7235	-0.0024529	519.303073533374	85.612	0.57822	85.636	85.408	85.987	0.023666					20	13	2	0	0	0	0.024436	1	10651	10651		38.806	5.9937	1	221290			49732	5140	34586	34639	55158	55158					0.07888405488097305
LVFVTWLIG	9	Unmodified	_LVFVTWLIG_					0	0	0		ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2798461914062	2	524.315503	1046.61645	-0.47754	-0.00025038	-3.3395	-0.0017509	-3.817	-0.0020013	524.3136298232681	78.9	1.0421	78.708	78.422	79.464	-0.1921					35	24	2	0	0	0	0.024412	1	9757	9757		40.573	17.53	1	138210			49733	9681	34587	34640	55159	55159					0.09500995867756501
LVFVYIVV	8	Unmodified	_LVFVYIVV_					0	0	0		sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.3157043457031	2	476.299322	950.584091	0.11225	5.3467E-05	2.3306	0.0011101	2.4429	0.0011635	476.29925356454754	65.281	1.0871	65.318	65.117	66.205	0.037384					41	29	2	0	0	0	0.027866	1	7758	7758		16.705	0	1	647150			49734	37941	34588	34641	55160	55160					0.10682208464754694
LVFVYIVV	8	Unmodified	_LVFVYIVV_					0	0	0		sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.299322	950.584091	0.41115	0.00019583	9.4397	0.0044961	9.8508	0.0046919	476.3004440861825	65.305	0.6573	65.305	64.909	65.566	0	-0.01381	0.0038306	NaN	10.185	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044800			49735	37941	34588	34641							0.10682208464754694
LVFVYIVV	8	Unmodified	_LVFVYIVV_					0	0	0		sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	sp|P06792|VE5_HPV18ProbableproteinE5OS=Humanpapillomavirustype18OX=333761GN=E5PE=3SV=1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.299322	950.584091	-0.0042044	-2.0026E-06	4.8197	0.0022956	4.8155	0.0022936	476.3003130977388	65.605	0.97211	65.333	64.748	65.72	-0.27282	0.014059	-0.00057036	NaN	10.185	38	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490840			49736	37941	34588	34641							0.10682208464754694
LVFYNDRA	8	Unmodified	_LVFYNDRA_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8961181640625	2	499.258717	996.50288	-1.0161	-0.00050728	1.3363	0.00066718	0.32028	0.0001599	499.2591768540593	46.5	0.71473	46.347	46.061	46.776	-0.15248					50	19	4	0	0	0	0.027866	1	4553	4553		25.45	8.0852	1	967410			49737	6165	34589	34642	55161	55161					0.004489007547022084
LVFYNDRA	8	Unmodified	_LVFYNDRA_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.258717	996.50288	-0.021096	-1.0532E-05	0.27613	0.00013786	0.25503	0.00012733	499.2586549313176	46.374	0.74268	46.425	46.167	46.91	0.051399	0.085102	-0.00014229	NaN	25.45	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1444200			49738	6165	34589	34642							0.004489007547022084
LVFYNDRA	8	Unmodified	_LVFYNDRA_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.258717	996.50288	0.0067622	3.3761E-06	-1.0803	-0.00053934	-1.0735	-0.00053596	499.2581525599938	46.318	0.39938	46.221	46.039	46.438	-0.096649	-0.11911	-0.0014967	NaN	25.45	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285840			49739	6165	34589	34642							0.004489007547022084
LVFYNDRA	8	Unmodified	_LVFYNDRA_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.258717	996.50288	-0.14369	-7.1739E-05	-0.13143	-6.5618E-05	-0.27512	-0.00013736	499.2584572338394	46.666	0.40791	46.404	46.162	46.569	-0.26118	0.064112	-0.00054925	NaN	25.45	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414070			49740	6165	34589	34642							0.004489007547022084
LVFYNDRA	8	Unmodified	_LVFYNDRA_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.258717	996.50288	-0.91097	-0.00045481	0.56361	0.00028139	-0.34736	-0.00017342	499.2588296072479	46.486	0.53107	46.284	46.005	46.536	-0.20226	-0.056515	0.00014476	NaN	25.45	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920610			49741	6165	34589	34642							0.004489007547022084
LVFYYVTGF	9	Unmodified	_LVFYYVTGF_					0	0	0		ENSG00000102057|ENST00000218176|KCND1;KCND1|p.A184T|1|0.24|ENSG00000102057|chrX:48969722-48969722|C/T|missense_variant;nc|ENSG00000171385|Q9UK17-2|KCND3;ENSG00000171385|ENST00000302127|KCND3;ENSG00000184408|ENST00000331113|KCND2	ENSG00000102057|ENST00000218176|KCND1;ENSG00000184408|ENST00000331113|KCND2	ENSG00000102057|ENST00000218176|KCND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.3163452148438	2	554.789318	1107.56408	-0.44584	-0.00024735	1.7684	0.00098111	1.3226	0.00073376	554.7897336986695	22.079	0.33669	21.877	21.76	22.097	-0.20199					9	6	2	0	0	0	0.024497	1	744	744		20.482	0	1	14318			49742	2375;9335	34590	34643	55162	55162					0.014604127341499407
LVGAHRKVL	9	Unmodified	_LVGAHRKVL_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.75079345703125	2	496.821818	991.629084	0.45976	0.00022842	-0.68865	-0.00034213	-0.22889	-0.00011372	496.82139445289874	40.545	0.48557	40.545	40.314	40.8	0					22	13	2	0	0	0	0.024466	1	3557	3557		33.516	3.0119	1	395070	+		49743	20389	34591	34644	55163	55163					0.13293452050652377
LVGAQANRF	9	Unmodified	_LVGAQANRF_					0	0	0			REV__nc|ENSG00000138081|Q86XK2-6|FBXO11	REV__nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.249755859375	2	488.272158	974.529764	-0.11985	-5.8519E-05	4.0903	0.0019972	3.9704	0.0019387	488.2739876185418	24.954	1.2425	25.032	24.547	25.79	0.078344					58	28	3	0	0	0	0.024386	1	1192	1192		33.516	0	1	241670	+		49744	23816	34592	34645	55164	55164					0.041480093658947226
LVGAWAGFLL	10	Unmodified	_LVGAWAGFLL_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3194580078125	2	523.805303	1045.59605	-0.64005	-0.00033526	-3.8002	-0.0019905	-4.4402	-0.0023258	523.8036607434129	64.392	0.85872	64.13	63.791	64.65	-0.2626					57	22	3	0	0	0	0.03519	1	7611	7611		35.201	0	1	1035100	+		49745	28484	34593	34646	55165	55165					0.07507825207949281
LVGEEYKSIP	10	Unmodified	_LVGEEYKSIP_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7774658203125	2	567.805697	1133.59684	-0.7428	-0.00042176	-3.6726	-0.0020853	-4.4154	-0.0025071	567.80111478545	61.647	0.95471	61.469	61.162	62.117	-0.17781					65	23	5	0	0	0	0.03519	1	6989	6989		45.952	22.909	1	901640			49746	6177	34594	34647	55166	55166					0.035385750663408544
LVGEHLNII	9	Unmodified	_LVGEHLNII_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2753601074219	2	504.297842	1006.58113	-0.16875	-8.5099E-05	-0.028697	-1.4472E-05	-0.19744	-9.9571E-05	504.2975402363509	57.069	0.60286	56.904	56.675	57.278	-0.16431					25	16	2	0	0	0	0.024294	1	6341	6341		45.952	8.7928	1	338670			49747	198	34595	34648	55167	55167					0.0781033333993264
LVGFAILLCV	10	Unmodified	_LVGFAILLCV_					0	0	0		ENST00000429422.5_2_3:47893409-47893526:-|nuORF	ENST00000429422.5_2_3:47893409-47893526:-|nuORF	ENST00000429422.5_2_3:47893409-47893526:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2890625	2	524.317189	1046.61982	-0.21942	-0.00011505	-2.711	-0.0014214	-2.9304	-0.0015365	524.3159101394156	72.223	0.33147	72.025	71.788	72.12	-0.1981					10	7	2	0	0	0	0.03519	1	8424	8424		54.765	17.736	1	113770			49748	14146	34596	34649	55168	55168					0.0983792265012653
LVGFGYERSI	10	Unmodified	_LVGFGYERSI_					0	0	0			REV__nc|ENSG00000172116|P10966-4|CD8B	REV__nc|ENSG00000172116|P10966-4|CD8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8074951171875	2	570.806031	1139.59751	0.63895	0.00036471	0.38016	0.000217	1.0191	0.00058171	570.806017089208	73.979	0.89381	73.979	73.741	74.635	0					63	20	4	0	0	0	0.74632	1	9036	9036		64.207	9.431	1	3335700	+		49749	36938	34597	34650	55169	55169					0.0332941450603812
LVGFIRMYAD	10	Unmodified	_LVGFIRMYAD_					0	0	0			REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	592.275634765625	2	592.810259	1183.60597	-0.4888	-0.00028977	2.9863	0.0017703	2.4975	0.0014805	592.8121320063497	68.337	0.36192	68.077	67.94	68.302	-0.26041					15	8	3	0	0	0	0.03519	1	7896	7896		30.504	0	1	96710	+		49750	27063	34598	34651	55170	55170					0.021506451510049374
LVGFLTHNN	9	Unmodified	_LVGFLTHNN_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7927551269531	2	507.771991	1013.52943	-0.25602	-0.00013	2.984	0.0015152	2.728	0.0013852	507.7734758315311	43.953	0.32676	43.99	43.781	44.108	0.0369					14	8	2	0	0	0	0.024427	1	4102	4102		51.335	17.163	1	303230	+		49751	20221	34599	34652	55171	55171					0.023205896460240183
LVGGCAGAPAI	11	Unmodified	_LVGGCAGAPAI_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2882995605469	2	464.74967	927.484787	-0.064222	-2.9847E-05	-2.8578	-0.0013281	-2.922	-0.001358	464.74795889318665	62.074	0.33307	61.847	61.611	61.945	-0.22663					13	8	2	0	0	0	0.024791	1	7164	7164		40.573	10.069	1	81878	+		49752	20711	34600	34653	55172	55172					0.018144425083505666
LVGGSETPLV	10	Unmodified	_LVGGSETPLV_					0	0	0		nc|ENSG00000072201|Q8TBB1-2|LNX1;ENSG00000072201|ENST00000263925|LNX1	nc|ENSG00000072201|Q8TBB1-2|LNX1	nc|ENSG00000072201|Q8TBB1-2|LNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79656982421875	2	486.274032	970.533512	-0.1923	-9.3511E-05	0.28829	0.00014019	0.095989	4.6677E-05	486.2740530334244	59.282	0.80701	59.368	58.921	59.728	0.085682					49	21	4	0	0	0	0.03519	1	6695	6695		53.351	14.545	1	2152500			49753	1473	34601	34654	55173	55173					0.04706634349099659
LVGIIAGPVF	10	Unmodified	_LVGIIAGPVF_					0	0	0		nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B	nc|ENSG00000135503|P36896-5|ACVR1B	nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2875671386719	2	493.307678	984.600803	-0.24449	-0.00012061	-0.12492	-6.1623E-05	-0.36941	-0.00018223	493.3066239221177	22.128	0.18586	22.128	22.012	22.198	0					5	3	2	0	0	0	0.03519	1	737	737		19.36	1.995	1	19944			49754	4903	34602	34655	55174	55174					0.10788709350708814
LVGIRYFI	8	Unmodified	_LVGIRYFI_					0	0	0		MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2551574707031	2	490.80002	979.585488	-0.99732	-0.00048948	-3.2719	-0.0016059	-4.2692	-0.0020953	490.7982713865601	40.059	0.62005	40.082	39.84	40.46	0.023006					36	16	3	0	0	0	0.027866	1	3444	3444		42.474	0	1	984770			49755	6220	34603	34656	55175	55175					0.09487842553505743
LVGIVVALLI	10	Unmodified	_LVGIVVALLI_					0	0	0			REV__nc|ENSG00000145242|P54756-3|EPHA5	REV__nc|ENSG00000145242|P54756-3|EPHA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3239440917969	2	505.354628	1008.6947	-0.0096505	-4.8769E-06	-1.5754	-0.00079615	-1.5851	-0.00080103	505.3541203181481	78.962	0.1252	78.981	78.903	79.028	0.018669					4	2	2	0	0	0	0.03519	1	9700	9700		44.531	3.9584	1	59240	+		49756	24391	34604	34657	55176	55176					0.19070428452994292
LVGKKQLLL	9	Unmodified	_LVGKKQLLL_					0	0	0		ENST00000542587.5_3_19:19738235-19738667:-|nuORF;ENST00000592061.1_1_19:19738235-19738493:-|nuORF	ENST00000542587.5_3_19:19738235-19738667:-|nuORF	ENST00000542587.5_3_19:19738235-19738667:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3196716308594	2	506.349877	1010.6852	-0.35307	-0.00017878	-0.67595	-0.00034227	-1.029	-0.00052104	506.3493034244485	52.985	0.74074	52.837	52.569	53.31	-0.14723					41	19	3	0	0	0	0.024487	1	5684	5684		40.573	14.999	1	1211000			49757	16462	34605	34658	55177	55177					0.18028660167476573
LVGKLDGKW	9	Unmodified	_LVGKLDGKW_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7641296386719	2	508.300384	1014.58622	-0.68151	-0.00034641	-4.1937	-0.0021317	-4.8753	-0.0024781	508.2981474882291	22.098	0.51857	22.098	21.819	22.338	0					24	10	3	0	0	0	0.024323	1	755	755		44.117	3.5442	1	116040	+		49758	20698	34606	34659	55178	55178					0.07950637202554844
LVGKRKNI	8	Unmodified	_LVGKRKNI_					0	0	0		nc|ENSG00000183833|Q7Z4T9-6|CFAP91;nc|ENSG00000183833|Q7Z4T9-3|CFAP91;nc|ENSG00000183833|Q7Z4T9-8|CFAP91;ENST00000482927.5_1_3:119422024-119469941:+|nuORF;ENSG00000183833|ENST00000273390|CFAP91	nc|ENSG00000183833|Q7Z4T9-6|CFAP91	nc|ENSG00000183833|Q7Z4T9-6|CFAP91	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2789306640625	2	464.308544	926.602535	-0.55861	-0.00025937	1.7445	0.00081	1.1859	0.00055064	464.3104681004954	51.787	0.62034	51.639	51.157	51.777	-0.14735					23	17	2	0	0	0	0.027866	1	5408	5408		40.573	27.613	1	248200			49759	9283	34607	34660	55179	55179					0.13629763159326558
LVGLLNISDN	10	Unmodified	_LVGLLNISDN_					0	0	0			REV__ENST00000526766.1_1_11:112051504-112052349:+|nuORF	REV__ENST00000526766.1_1_11:112051504-112052349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.297607421875	2	529.298039	1056.58152	0.1048	5.5473E-05	-0.73635	-0.00038975	-0.63155	-0.00033428	529.2974682186262	106.31	0.71573	106.31	106.01	106.72	0					55	26	4	0	0	0	1.0616	1	13660	13660		37.812	2.6108	1	603100	+		49760	34458	34608	34661	55180	55180					0.055497082691545074
LVGLSLPTRF	10	Unmodified	_LVGLSLPTRF_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.8178100585938	2	551.834591	1101.65463	-0.33402	-0.00018432	3.3413	0.0018438	3.0072	0.0016595	552.3357363451778	39.147	0.28243	39.147	39.006	39.288	0					9	7	2	0	0	0	0.03519	1	3321	3321		30.504	1.3541	1	110040			49761	10387	34609	34662	55181	55181					0.10786881782405544
LVGPAGTAGD	10	Unmodified	_LVGPAGTAGD_					0	0	0			REV__nc|ENSG00000110076|P58401|NRXN2	REV__nc|ENSG00000110076|P58401|NRXN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.256591796875	2	429.2218	856.429047	-0.6442	-0.00027651	0.74774	0.00032095	0.10354	4.444E-05	429.22197696516696	44.941	1.1267	44.941	44.519	45.646	0					77	32	5	0	0	0	0.03519	1	4267	4267		45.952	10.334	1	2372800	+		49762	36563	34610	34663	55182	55182					-0.004910674076199939
LVGQDRLAD	9	Unmodified	_LVGQDRLAD_					0	0	0			REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.295166015625	2	493.766906	985.519259	-0.094474	-4.6648E-05	3.9826	0.0019665	3.8881	0.0019198	493.7686491889265	52.964	0.71465	52.817	52.488	53.203	-0.14723					44	18	4	0	0	0	0.02435	1	5733	5733		34.173	8.5985	1	2096900	+		49763	34372	34611	34664	55183	55183					0.025919819207956607
LVGQLYKS	8	Unmodified	_LVGQLYKS_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.2611389160156	2	454.26601	906.517468	-0.94752	-0.00043043	0.25512	0.00011589	-0.6924	-0.00031453	454.26590591846275	29.16	0.90261	28.915	28.665	29.567	-0.24524					35	20	3	0	0	0	0.027866	1	1820	1820		31.955	0	1	637210			49764	1851	34612	34665	55184	55184					0.06046972902856851
LVGRAADAP	9	Unmodified	_LVGRAADAP_					0	0	0		nc|ENSG00000205084|Q9H6L2-2|TMEM231;ENST00000564318.1_1_16:75573894-75575375:-|nuORF;nc|ENSG00000205084|Q9H6L2-3|TMEM231;ENSG00000205084|ENST00000258173|TMEM231	nc|ENSG00000205084|Q9H6L2-2|TMEM231	nc|ENSG00000205084|Q9H6L2-2|TMEM231	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2478942871094	2	435.245609	868.476666	-0.38512	-0.00016762	4.3913	0.0019113	4.0062	0.0017437	435.247343650344	29.183	0.75484	29.186	28.755	29.509	0.0031357					46	18	3	0	0	0	0.50848	1	1743	1743		58.782	9.3404	1	2661000			49765	18668	34613	34666	55185	55185					0.03716631583222352
LVGRARPE	8	Unmodified	_LVGRARPE_					0	0	0			REV__CON__REFSEQ:XP_932229	REV__CON__REFSEQ:XP_932229	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.5613098144531	2	449.266876	896.519199	0.26514	0.00011912	-1.1511	-0.00051717	-0.88599	-0.00039805	449.26638755601954	48.001	0.30513	47.814	47.596	47.902	-0.18684					10	7	2	0	0	0	0.027866	1	4733	4733		27.882	0	1	110620	+	+	49766	19607	34614	34667	55186	55186					0.06680026711467235
LVGRVLVL	8	Unmodified	_LVGRVLVL_					0	0	0		ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.8023986816406	2	434.802563	867.590573	-0.10355	-4.5025E-05	0.41901	0.00018219	0.31545	0.00013716	434.80258553449914	65.927	0.92402	65.686	65.414	66.338	-0.24145					64	22	4	0	0	0	0.44541	1	7540	7540		90.939	12.995	1	3442700			49767	15406	34615	34668	55187	55187					0.15148146416129293
LVGRVLVL	8	Unmodified	_LVGRVLVL_					0	0	0		ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.8027038574219	2	434.802563	867.590573	-0.67817	-0.00029487	0.83446	0.00036283	0.15629	6.7957E-05	434.8027786390961	65.961	0.99223	65.748	65.421	66.414	-0.21327					63	24	4	0	0	0	0.58212	1	7559	7559		77.944	8.8509	1	3002400			49768	15406	34615	34668	55188	55188					0.15148146416129293
LVGRVLVL	8	Unmodified	_LVGRVLVL_					0	0	0		ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.80255126953125	2	434.802563	867.590573	-0.028794	-1.252E-05	0.10652	4.6316E-05	0.077727	3.3796E-05	434.80246974338013	65.915	1.0267	65.664	65.353	66.38	-0.25112					59	25	3	0	0	0	0.67787	1	7534	7534		69.093	3.1955	1	3429700			49769	15406	34615	34668	55189	55189					0.15148146416129293
LVGTATVALL	10	Unmodified	_LVGTATVALL_					0	0	0		LMF2|p.F414L|1|0.21|ENSG00000100258|chr22:50505071-50505071|A/G|missense_variant	LMF2|p.F414L|1|0.21|ENSG00000100258|chr22:50505071-50505071|A/G|missense_variant	LMF2|p.F414L|1|0.21|ENSG00000100258|chr22:50505071-50505071|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.27764892578125	2	479.302593	956.590633	-0.58771	-0.00028169	-3.0635	-0.0014684	-3.6512	-0.0017501	479.30052681976207	83.97	0.39159	83.997	83.814	84.206	0.02655					13	8	2	0	0	0	0.03519	1	10414	10414		45.952	0	1	51671			49770	17918	34616	34669	55190	55190					0.11060101625469088
LVGTLVTY	8	Unmodified	_LVGTLVTY_					0	0	0		CSMD3|p.R2653L|1|0.22|ENSG00000164796|chr8:112306120-112306120|C/A|missense_variant	CSMD3|p.R2653L|1|0.22|ENSG00000164796|chr8:112306120-112306120|C/A|missense_variant	CSMD3|p.R2653L|1|0.22|ENSG00000164796|chr8:112306120-112306120|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.7322082519531	2	433.255111	864.49567	0.43864	0.00019004	-2.4952	-0.0010811	-2.0566	-0.00089102	433.2535820654739	98.395	0.50118	98.405	98.021	98.522	0.010231					16	11	2	0	0	0	0.027866	1	12519	12519		26.796	1.3459	1	68602			49771	594	34617	34670	55191	55191					0.05800168154280527
LVGTVVWICL	10	Unmodified	_LVGTVVWICL_					0	0	0			REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8	REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8176879882812	2	551.820095	1101.62564	-0.51183	-0.00028244	-3.7736	-0.0020823	-4.2854	-0.0023648	551.817852230935	41.761	2.9951	41.629	40.075	43.07	-0.1322					204	84	4	0	0	0	0.87795	1	3788	3788		55.504	0.78186	1	3618100	+		49772	25799	34618	34671	55192	55192					0.07889021161759047
LVGVLAPSL	9	Unmodified	_LVGVLAPSL_					0	0	0		ENST00000324866.11_1_11:71806383-71806563:+|nuORF	ENST00000324866.11_1_11:71806383-71806563:+|nuORF	ENST00000324866.11_1_11:71806383-71806563:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.75579833984375	2	434.778754	867.542954	0.22051	9.5871E-05	2.8932	0.0012579	3.1137	0.0013538	434.77992314621974	63.019	1.3493	63.019	62.531	63.88	0					62	35	2	0	0	0	0.024436	1	7472	7472		16.473	0	1	155790			49773	12264	34619	34672	55193	55193					0.10388447425293634
LVGVLAPSL	9	Unmodified	_LVGVLAPSL_					0	0	0		ENST00000324866.11_1_11:71806383-71806563:+|nuORF	ENST00000324866.11_1_11:71806383-71806563:+|nuORF	ENST00000324866.11_1_11:71806383-71806563:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	434.778754	867.542954	0.65111	0.00028309	1.5915	0.00069193	2.2426	0.00097502	434.7793544967673	63.263	1.0315	63.005	62.606	63.637	-0.25824	-0.054446	-0.00070653	NaN	10.866	42	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129960			49774	12264	34619	34672							0.10388447425293634
LVGVLRATV	9	Unmodified	_LVGVLRATV_					0	0	0			REV__ENSG00000162604|ENST00000606498|TM2D1	REV__ENSG00000162604|ENST00000606498|TM2D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7689514160156	2	464.302927	926.591301	-0.36348	-0.00016877	0.46505	0.00021592	0.10157	4.7158E-05	464.3030745544949	67.205	0.92673	67.205	66.755	67.682	0					52	22	4	0	0	0	0.024541	1	7958	7958		31.955	23.724	1	502690	+		49775	25461	34620	34673	55194	55194					0.1250694106516903
LVGVSNMHKV	10	Unmodified	_LVGVSNMHKV_					0	0	0			REV__BPNT1|p.A282V|1|0.06|ENSG00000162813|chr1:220058926-220058926|G/A|missense_variant	REV__BPNT1|p.A282V|1|0.06|ENSG00000162813|chr1:220058926-220058926|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.30029296875	2	542.302601	1082.59065	-1.2708	-0.00068918	-3.2388	-0.0017564	-4.5097	-0.0024456	542.3008168915045	64.723	1.688	64.769	64.448	66.137	0.045502					85	45	2	0	0	0	0.61732	1	7547	7547		75.043	0.78827	1	21138000	+		49776	19218	34621	34674	55195	55195					0.052657783538279546
LVGVTVMLF	9	Oxidation (M)	_LVGVTVM(Oxidation (M))LF_		LVGVTVM(1)LF		LVGVTVM(87)LF	0	0	1		ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7591857910156	2	497.785721	993.55689	-0.54031	-0.00026896	4.1683	0.0020749	3.628	0.001806	497.7876822515526	60.7	0.88899	60.7	60.366	61.255	0					55	23	4	0	0	0	0.023254	1	6945	6945		86.935	21.131	1	3625800			49777	5876	34622	34675	55196	55196		248			0.05985356862061053
LVHAVQALW	9	Unmodified	_LVHAVQALW_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.8002319335938	2	518.800552	1035.58655	0.023509	1.2196E-05	-0.51806	-0.00026877	-0.49455	-0.00025657	518.8001534569917	63.321	0.97613	63.137	62.83	63.807	-0.18386					78	24	4	0	0	0	0.24299	2	7157	7157;7169		83.287	8.7706	1	6022700			49778	849	34623	34676	55197;55198	55197					0.07018056922402138
LVHAVQALW	9	Unmodified	_LVHAVQALW_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.8004150390625	2	518.800552	1035.58655	0.43664	0.00022653	-0.79516	-0.00041253	-0.35852	-0.000186	518.800036692179	63.475	0.99881	63.216	62.876	63.875	-0.25824					79	25	4	0	0	0	0.088511	2	7150	7150;7163		114.59	32.281	1	5566500			49779	849	34623	34676	55199;55200	55199					0.07018056922402138
LVHDHETGIA	10	Unmodified	_LVHDHETGIA_					0	0	0			REV__nc|ENSG00000168904|Q86X40-2|LRRC28	REV__nc|ENSG00000168904|Q86X40-2|LRRC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.3101196289062	2	546.277638	1090.54072	-0.57577	-0.00031453	0.93528	0.00051092	0.35951	0.00019639	546.2774771320899	103.27	0.38542	103.26	103.06	103.44	-0.0046005					12	8	2	0	0	0	0.03519	1	13192	13192		23.042	8.9054	1	64291	+		49780	36910	34624	34677	55201	55201					-0.0009263305046260939
LVHGGRTKE	9	Unmodified	_LVHGGRTKE_					0	0	0		ENST00000534265.5_2_11:9482574-9494227:+|nuORF;ENST00000532577.5_1_11:9482538-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7840270996094	2	498.78289	995.551228	0.42452	0.00021174	3.3041	0.001648	3.7286	0.0018598	498.78438644541257	47.298	0.86165	47.145	46.776	47.637	-0.15301					51	23	4	0	0	0	0.82115	1	4702	4702		37.812	0.65241	1	3492000			49781	16294	34625	34678	55202	55202					0.053273943946123836
LVHGGRTKE	9	Unmodified	_LVHGGRTKE_					0	0	0		ENST00000534265.5_2_11:9482574-9494227:+|nuORF;ENST00000532577.5_1_11:9482538-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7845153808594	2	498.78289	995.551228	-0.54749	-0.00027308	4.3436	0.0021665	3.7961	0.0018934	498.784863885332	47.124	0.75146	47.184	46.957	47.708	0.059093					46	21	4	0	0	0	0.56934	1	4650	4650		54.776	3.4409	1	3673600			49782	16294	34625	34678	55203	55203					0.053273943946123836
LVHGGRTKE	9	Unmodified	_LVHGGRTKE_					0	0	0		ENST00000534265.5_2_11:9482574-9494227:+|nuORF;ENST00000532577.5_1_11:9482538-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.78289	995.551228	-0.1092	-5.4466E-05	3.8477	0.0019192	3.7385	0.0018647	498.7846303253991	46.929	0.51134	46.833	46.572	47.083	-0.096649	-0.19423	3.064E-05	NaN	54.776	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424630			49783	16294	34625	34678							0.053273943946123836
LVHGGRTKE	9	Unmodified	_LVHGGRTKE_					0	0	0		ENST00000534265.5_2_11:9482574-9494227:+|nuORF;ENST00000532577.5_1_11:9482538-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.78289	995.551228	0.1533	7.6462E-05	3.8519	0.0019213	4.0052	0.0019977	498.784637324527	47.318	0.7693	47.049	46.764	47.534	-0.26939	0.021838	3.4802E-05	NaN	54.776	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374600			49784	16294	34625	34678							0.053273943946123836
LVHGGRTKE	9	Unmodified	_LVHGGRTKE_					0	0	0		ENST00000534265.5_2_11:9482574-9494227:+|nuORF;ENST00000532577.5_1_11:9482538-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	ENST00000534265.5_2_11:9482574-9494227:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.78289	995.551228	-0.51825	-0.0002585	4.5443	0.0022666	4.026	0.0020081	498.78489505868896	47.119	0.5539	46.925	46.678	47.232	-0.19387	-0.10164	0.00072551	NaN	54.776	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429890			49785	16294	34625	34678							0.053273943946123836
LVHIENLEP	9	Unmodified	_LVHIENLEP_					0	0	0			REV__nc|ENSG00000128585|Q9UL63-2|MKLN1	REV__nc|ENSG00000128585|Q9UL63-2|MKLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.2949829101562	2	532.292756	1062.57096	-0.4973	-0.00026471	4.0853	0.0021746	3.588	0.0019099	532.2947155372891	101.1	0.86356	101.11	100.79	101.65	0.0090256					50	19	4	0	0	0	0.23085	1	12910	12910		84.916	2.675	1	1075800	+		49786	22994	34626	34679	55204	55204					0.04217725614716983
LVHLEGPLR	9	Unmodified	_LVHLEGPLR_					0	0	0		nc|ENSG00000254167|P0DTE2|IGHV8-51-1	nc|ENSG00000254167|P0DTE2|IGHV8-51-1	nc|ENSG00000254167|P0DTE2|IGHV8-51-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7953491210938	2	517.311284	1032.60801	0.069802	3.6109E-05	-3.6399	-0.001883	-3.5701	-0.0018469	517.3122621619167	23.496	0.68565	23.294	23.061	23.747	-0.20193					36	15	3	0	0	0	0.024541	1	1000	1000		24.203	10.427	1	162100			49787	18771	34627	34680	55205	55205					0.09301441951129163
LVHLFVGRM	9	Unmodified	_LVHLFVGRM_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5;REV__ENSG00000170385|ENST00000367001|SLC30A1	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.331298828125	2	536.310229	1070.60591	-0.28228	-0.00015139	-1.5771	-0.00084581	-1.8594	-0.00099721	536.3079772208333	47.12	0.28109	46.851	46.662	46.943	-0.26939					10	7	2	0	0	0	0.024466	1	4552	4552		25.45	9.814	1	91004	+		49788	24429;26465	34628	34681	55206	55206					0.07342689941697245
LVHLFVGRM	9	Unmodified	_LVHLFVGRM_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5;REV__ENSG00000170385|ENST00000367001|SLC30A1	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.310229	1070.60591	-0.33985	-0.00018227	-9.0332	-0.0048446	-9.3731	-0.0050269	536.3054931621958	47.14	0.64618	46.987	46.479	47.125	-0.153	0.045894	-0.0039114	NaN	12.207	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109690	+		49789	24429;26465	34628	34681							0.07342689941697245
LVHLFVGRM	9	Unmodified	_LVHLFVGRM_					0	0	0			REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5;REV__ENSG00000170385|ENST00000367001|SLC30A1	REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.310229	1070.60591	-0.92133	-0.00049412	-8.1009	-0.0043446	-9.0222	-0.0048387	536.3058144268236	46.927	0.76057	46.986	46.383	47.144	0.059097	0.044426	-0.0029114	NaN	12.207	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166060	+		49790	24429;26465	34628	34681							0.07342689941697245
LVHNPVLTE	9	Unmodified	_LVHNPVLTE_					0	0	0		nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	nc|ENSG00000204290|Q9UIR0-1|BTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2879943847656	2	511.287474	1020.5604	-1.4541	-0.00074347	0.1571	8.0323E-05	-1.297	-0.00066315	511.28755579843585	65.184	0.48863	64.981	64.778	65.266	-0.20254					26	11	3	0	0	0	0.024495	1	7417	7417		42.396	19.354	1	423310			49791	10323	34629	34682	55207	55207					0.050937429602640805
LVHQAICNLNI	11	Unmodified	_LVHQAICNLNI_					0	0	0		ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.5503845214844	3	413.228902	1236.66488	-0.098018	-4.0504E-05	2.9545	0.0012209	2.8565	0.0011804	413.2303668893478	29.616	0.51512	29.619	29.276	29.792	0.0031376					16	12	2	0	0	0	0.024748	1	1827	1827		30.569	2.4874	1	99046			49792	5810;87	34630	34683	55208	55208					0.05601121445351964
LVHSGEHLDL	10	Unmodified	_LVHSGEHLDL_					0	0	0		ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.2960815429688	2	560.293288	1118.57202	0.394	0.00022075	2.9096	0.0016302	3.3036	0.001851	560.2948574307109	72.785	0.81947	72.503	72.18	72.999	-0.28124					46	19	3	0	0	0	1.0002	1	8836	8836		45.972	3.5761	1	1882000			49793	11139	34631	34684	55209	55209					0.017479399836020093
LVHTASYG	8	Unmodified	_LVHTASYG_					0	0	0		ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2190246582031	2	424.21906	846.423567	0.068932	2.9242E-05	-1.3324	-0.00056525	-1.2635	-0.00053601	424.21842173588857	95.216	1.646	95.064	94.324	95.97	-0.15186					65	37	2	0	0	0	0.95417	1	11714	11714		44.531	2.1349	1	275470			49794	2464	34632	34685	55210	55210					-0.005787461994259502
LVHYGHRCL	9	Unmodified	_LVHYGHRCL_					0	0	0		ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8224487304688	2	549.287285	1096.56002	-0.70457	-0.00038701	-0.67911	-0.00037303	-1.3837	-0.00076004	549.2868877510925	57.255	0.54799	57.088	56.896	57.444	-0.1672					20	14	2	0	0	0	0.024535	1	6218	6218		18.324	4.5491	1	356500			49795	5819	34633	34686	55211	55211					0.015600447594579236
LVHYGHRCL	9	Unmodified	_LVHYGHRCL_					0	0	0		ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	549.287285	1096.56002	-0.19604	-0.00010768	-0.93737	-0.00051489	-1.1334	-0.00062257	549.2862813488024	57.308	0.58016	57.143	56.812	57.392	-0.16528	0.027047	-0.00020218	NaN	7.1934	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542260			49796	5819	34633	34686							0.015600447594579236
LVHYGHRCL	9	Unmodified	_LVHYGHRCL_					0	0	0		ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.287285	1096.56002	-0.70646	-0.00038805	-0.80809	-0.00044388	-1.5146	-0.00083193	549.286416215128	56.995	0.50999	57.09	56.846	57.356	0.095306	-0.02524	-6.0158E-05	NaN	7.1934	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508630			49797	5819	34633	34686							0.015600447594579236
LVHYGHRCL	9	Unmodified	_LVHYGHRCL_					0	0	0		ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.287285	1096.56002	0.14812	8.1361E-05	-0.51686	-0.0002839	-0.36874	-0.00020254	549.2864125595029	57.279	0.39422	57.077	56.926	57.32	-0.20208	-0.038365	0.00025979	NaN	7.1934	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243310			49798	5819	34633	34686							0.015600447594579236
LVHYGHRCL	9	Unmodified	_LVHYGHRCL_					0	0	0		ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	ENSG00000145545|ENST00000274192|SRD5A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.287285	1096.56002	-0.55298	-0.00030374	-0.63192	-0.0003471	-1.1849	-0.00065085	549.2868434488821	57.414	0.3599	57.18	56.989	57.349	-0.23363	0.0646	0.00013339	NaN	7.1934	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357890			49799	5819	34633	34686							0.015600447594579236
LVIAEKGLVC	10	Unmodified	_LVIAEKGLVC_					0	0	0		ENSG00000124194|ENST00000342560|GDAP1L1;nc|ENSG00000124194|Q96MZ0-4|GDAP1L1;nc|ENSG00000124194|Q96MZ0-2|GDAP1L1	ENSG00000124194|ENST00000342560|GDAP1L1	ENSG00000124194|ENST00000342560|GDAP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.8118286132812	2	522.809728	1043.6049	-0.37468	-0.00019589	3.587	0.0018753	3.2124	0.0016795	522.8116264100595	95.269	1.298	95.132	94.638	95.936	-0.13689					80	29	4	0	0	0	1.089	1	11763	11763		34.173	0	1	739230			49800	4020	34634	34687	55212	55212					0.08484430782095842
LVIALTASSI	10	Unmodified	_LVIALTASSI_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7894287109375	2	494.307875	986.601197	0.60808	0.00030058	-0.66484	-0.00032863	-0.056759	-2.8056E-05	494.3074210367098	88.161	0.67258	88.161	87.883	88.555	0					36	15	4	0	0	0	0.03519	1	11146	11146		37.159	20.686	1	441510	+		49801	27297	34635	34688	55213	55213					0.10736084279892566
LVIALTASSI	10	Unmodified	_LVIALTASSI_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7893981933594	2	494.307875	986.601197	0.65392	0.00032324	-0.64692	-0.00031978	0.0069977	3.459E-06	494.30740536119686	88.182	0.80334	88.2	87.909	88.713	0.018555					36	18	3	0	0	0	0.03519	1	11087	11087		60.972	13.315	1	400430	+		49802	27297	34635	34688	55214	55214					0.10736084279892566
LVICKKGKL	9	Unmodified	_LVICKKGKL_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.30548095703125	2	501.33063	1000.64671	-0.082041	-4.113E-05	-3.4626	-0.0017359	-3.5447	-0.001777	501.32883869049914	52.273	0.52482	52.273	51.906	52.431	0					20	13	2	0	0	0	0.024487	1	5608	5608		31.955	1.4512	1	111380	+		49803	28207	34636	34689	55215	55215					0.1464103126130567
LVIDLHNE	8	Unmodified	_LVIDLHNE_					0	0	0			REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.75775146484375	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	1.0239	1	13303	13303		33.516	1.5607	1	5421500	+		49804	26573	34637	34690	55216	55216					0.024854810348415413
LVIDVGEVT	9	Unmodified	_LVIDVGEVT_					0	0	0		ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7515869140625	2	472.768583	943.522613	0.40841	0.00019309	1.571	0.00074271	1.9794	0.0009358	472.7690945753745	33.693	0.70356	33.749	33.35	34.054	0.056572					44	17	4	0	0	0	0.024205	1	2413	2413		53.351	0	1	593680			49805	6433	34638	34691	55217	55217					0.04859231974819522
LVIEEAVE	8	Unmodified	_LVIEEAVE_					0	0	0		ENST00000584906.5_1_17:8283975-8285474:-|nuORF	ENST00000584906.5_1_17:8283975-8285474:-|nuORF	ENST00000584906.5_1_17:8283975-8285474:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2598571777344	2	451.247483	900.480414	0.55847	0.00025201	1.6366	0.00073849	2.195	0.0009905	451.2479764879215	39.834	0.75321	39.834	39.594	40.347	0					47	20	3	0	0	0	0.027866	1	3496	3496		42.474	10.52	1	1329500			49806	17215	34639	34692	55218	55218					0.026192565664246104
LVIELEEL	8	Unmodified	_LVIELEEL_					0	0	0		nc|ENSG00000184220|Q9BQ75-2|CMSS1;ENSG00000184220|ENST00000421999|CMSS1	nc|ENSG00000184220|Q9BQ75-2|CMSS1	nc|ENSG00000184220|Q9BQ75-2|CMSS1	MSMS	OPSCC_39_ClassI_Rep-1	1	479.27801513671875	2	479.278783	956.543014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.229	1	86.229	85.729	86.729	0								0	0	0	0.57512	1	10830	10830		50.025	5.6474	1				49807	9318	34640	34693	55219	55219					0.06300402634633429
LVIEMTILSA	10	Unmodified	_LVIEMTILSA_					0	0	0			REV__ENST00000433473.7_1_1:40539414-40539546:-|nuORF	REV__ENST00000433473.7_1_1:40539414-40539546:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3170166015625	2	545.314843	1088.61513	-0.95669	-0.0005217	4.45	0.0024266	3.4933	0.0019049	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0508	1	11242	11242		39.253	10.083	1	15621000	+		49808	32406	34641	34694	55220	55220					0.07436993716714824
LVIFVIWAV	9	Unmodified	_LVIFVIWAV_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;GHSR|p.V160M|1|0.1|ENSG00000121853|chr3:172447936-172447936|C/T|missense_variant;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2781982421875	2	530.333696	1058.65284	-0.36979	-0.00019611	-3.7968	-0.0020136	-4.1666	-0.0022097	530.3314948931743	69.052	0.66946	69.067	68.682	69.352	0.015121					39	17	3	0	0	0	0.024389	1	8263	8263		39.021	9.18	1	347690			49809	18225	34642	34695	55221	55221					0.12585872764452688
LVIFVIWAV	9	Unmodified	_LVIFVIWAV_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;GHSR|p.V160M|1|0.1|ENSG00000121853|chr3:172447936-172447936|C/T|missense_variant;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.333696	1058.65284	-0.89859	-0.00047655	-3.5245	-0.0018692	-4.4231	-0.0023457	530.3316213916958	69.34	0.74944	69.073	68.66	69.41	-0.26725	0.039998	0.00031879	NaN	39.021	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193470			49810	18225	34642	34695							0.12585872764452688
LVIFVIWAV	9	Unmodified	_LVIFVIWAV_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;GHSR|p.V160M|1|0.1|ENSG00000121853|chr3:172447936-172447936|C/T|missense_variant;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.333696	1058.65284	-0.2074	-0.00010999	-4.1865	-0.0022203	-4.3939	-0.0023302	530.3312262895943	69.207	0.57647	68.964	68.748	69.325	-0.24278	-0.069054	-0.00038335	NaN	39.021	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266900			49811	18225	34642	34695							0.12585872764452688
LVIFVIWAV	9	Unmodified	_LVIFVIWAV_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;GHSR|p.V160M|1|0.1|ENSG00000121853|chr3:172447936-172447936|C/T|missense_variant;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.333696	1058.65284	-0.22177	-0.00011761	-4.3286	-0.0022956	-4.5504	-0.0024132	530.3311520802905	69.227	0.54005	69.004	68.685	69.226	-0.22245	-0.028642	-0.00053406	NaN	39.021	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259270			49812	18225	34642	34695							0.12585872764452688
LVIIIFICF	9	Unmodified	_LVIIIFICF_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7533569335938	2	540.829932	1079.64531	-1.3555	-0.00073308	1.2563	0.00067947	-0.099124	-5.3609E-05	540.8304316701586	38.499	0.57658	38.319	38.068	38.645	-0.17929					36	15	4	0	0	0	0.024541	1	3178	3178		8.8223	4.5061	1	482150			49813	7358	34643	34696	55222	55222					0.10867397172523852
LVIILIQILLN	11	Unmodified	_LVIILIQILLN_					0	0	0		ENST00000519289.1_1_8:67716646-67726114:+|nuORF	ENST00000519289.1_1_8:67716646-67726114:+|nuORF	ENST00000519289.1_1_8:67716646-67726114:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	632.4293823242188	2	632.933774	1263.853	1.3844	0.00087622	-4.0723	-0.0025775	-2.6879	-0.0017013	632.93103163969	107.45	0.10444	107.45	107.39	107.49	0					4	2	2	0	0	0	0.024732	1	13805	13805		13.454	0	1	1076500			49814	15948	34644	34697	55223	55223					0.23162302641435417
LVIKKEEI	8	Unmodified	_LVIKKEEI_					0	0	0		nc|nan|Q53FE4-2|C4orf17;ENSG00000138813|ENST00000326581|C4orf17	nc|nan|Q53FE4-2|C4orf17	nc|nan|Q53FE4-2|C4orf17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2586975097656	2	486.310418	970.606283	-0.58198	-0.00028302	-0.10944	-5.3223E-05	-0.69142	-0.00033624	486.31014809000266	44.774	0.73051	44.562	44.257	44.988	-0.21109					43	18	3	0	0	0	0.027866	1	4237	4237		84.916	16.129	1	1125200			49815	5290	34645	34698	55224	55224					0.11980388142512766
LVILRYKDS	9	Unmodified	_LVILRYKDS_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	0.96322	1	10886	10886		27.882	0	1	6583300	+		49816	20689	34646	34699	55225	55225					0.10094577919790026
LVILRYKDS	9	Unmodified	_LVILRYKDS_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8304443359375	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.85329	1	10905	10905		35.618	4.0885	1	6921700	+		49817	20689	34646	34699	55226	55226					0.10094577919790026
LVILRYKDS	9	Unmodified	_LVILRYKDS_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8308715820312	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	0.80003	2	10914	10879;10914		39.253	3.6795	1	5986700	+		49818	20689	34646	34699	55227;55228	55228					0.10094577919790026
LVINGDFLAP	10	Unmodified	_LVINGDFLAP_					0	0	0		ENST00000531925.5_1_19:1789538-1806275:-|nuORF	ENST00000531925.5_1_19:1789538-1806275:-|nuORF	ENST00000531925.5_1_19:1789538-1806275:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2742309570312	2	529.797675	1057.5808	-0.59316	-0.00031425	-2.0945	-0.0011096	-2.6876	-0.0014239	529.7968417557447	46.971	1.0024	47.03	46.552	47.554	0.059097					44	27	3	0	0	0	0.03519	1	4576	4576		76.774	29.117	1	544790			49819	16275	34647	34700	55229	55229					0.05430913620079991
LVIPLIGRV	9	Unmodified	_LVIPLIGRV_					0	0	0			REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.33685302734375	2	490.33677	978.658987	0.13223	6.484E-05	0.19365	9.4956E-05	0.32589	0.0001598	490.3367015025274	76.418	0.83211	76.167	75.867	76.699	-0.25163					46	19	4	0	0	0	0.78069	1	9081	9081		40.573	1.7665	1	917590	+		49820	29393	34648	34701	55230	55230					0.16880390995993366
LVIPLIGRV	9	Unmodified	_LVIPLIGRV_					0	0	0			REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.33673095703125	2	490.33677	978.658987	0.21567	0.00010575	-0.051927	-2.5462E-05	0.16374	8.029E-05	490.3365641833634	76.231	0.99904	76.062	75.778	76.777	-0.16854					47	23	3	0	0	0	0.33184	1	9041	9041		71.378	8.3995	1	824530	+		49821	29393	34648	34701	55231	55231					0.16880390995993366
LVIRSPSLLQ	10	Unmodified	_LVIRSPSLLQ_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574934.5_1_17:4442712-4445225:-|nuORF;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.35302734375	2	563.353148	1124.69174	0.039323	2.2152E-05	0.33028	0.00018606	0.3696	0.00020822	563.3530233374349	74.444	2.3485	74.185	73.86	76.209	-0.25887					114	59	3	0	0	0	0.77808	2	9082	9059;9082		62.107	1.9892	1	5780100			49822	4599	34649	34702	55232;55233	55233					0.1343855332820567
LVIRTDLGY	9	Unmodified	_LVIRTDLGY_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3025512695312	2	525.303124	1048.5917	0.41611	0.00021859	-1.1885	-0.00062432	-0.77238	-0.00040573	525.3025713572408	63.64	1.2385	63.382	62.835	64.073	-0.25824					96	31	4	0	0	0	0.50848	1	7207	7207		58.782	0.97068	1	4324200			49823	5170	34650	34703	55234	55234					0.06934315994362805
LVISAARPA	9	Unmodified	_LVISAARPA_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.2796325683594	2	449.279452	896.544351	0.33094	0.00014868	-0.37652	-0.00016916	-0.045579	-2.0478E-05	449.2791621699234	50.245	1.196	50.065	49.788	50.984	-0.18071					44	31	2	0	0	0	0.50848	1	5094	5094		58.782	2.0609	1	1901100	+		49824	20907	34651	34704	55235	55235					0.09194081514033314
LVISAARPA	9	Unmodified	_LVISAARPA_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	449.279452	896.544351	0.35535	0.00015965	-0.3968	-0.00017827	-0.041449	-1.8622E-05	449.2791377064255	50.179	0.74855	50.074	49.783	50.531	-0.10558	-0.017473	-8.2297E-05	NaN	58.782	41	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1060100	+		49825	20907	34651	34704							0.09194081514033314
LVISAARPA	9	Unmodified	_LVISAARPA_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	449.279452	896.544351	0.12061	5.4186E-05	-0.15459	-6.9455E-05	-0.033984	-1.5268E-05	449.2792376573216	50.415	0.86155	50.135	49.875	50.737	-0.27977	0.043958	0.00013534	NaN	58.782	46	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1476300	+		49826	20907	34651	34704							0.09194081514033314
LVISAARPA	9	Unmodified	_LVISAARPA_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	449.279452	896.544351	0.33094	0.00014868	-0.37652	-0.00016916	-0.045579	-2.0478E-05	449.2791621699234	50.245	1.196	50.065	49.788	50.984	-0.18071	-0.026485	-6.407E-05	NaN	58.782	44	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1901100	+		49827	20907	34651	34704							0.09194081514033314
LVISFNILE	9	Unmodified	_LVISFNILE_					0	0	0			REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.307861328125	2	524.307875	1046.6012	-0.046482	-2.4371E-05	-1.6419	-0.00086088	-1.6884	-0.00088525	524.3073097027158	75.105	0.9119	74.829	74.352	75.264	-0.27573					56	21	4	0	0	0	0.32811	1	8864	8864		71.877	0	1	2458000	+		49828	30801	34652	34705	55236	55236					0.07976084279903262
LVITTGVRSLA	11	Unmodified	_LVITTGVRSLA_					0	0	0			REV__XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	REV__XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.7720947265625	2	565.350606	1128.68666	0.089476	5.0586E-05	3.6791	0.00208	3.7685	0.0021305	565.3525943610562	87.947	1.9185	87.965	87.007	88.925	0.018555					123	45	4	0	0	0	0.024735	1	10946	10946		19.997	3.5236	1	960190	+		49829	20128	34653	34706	55237	55237					0.12746249465567416
LVIVATSY	8	Unmodified	_LVIVATSY_					0	0	0		ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2564697265625	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.94	1	103.77	103.27	104.27	-0.16791								0	0	0	0.78881	1	12917	12917		35.201	0	1				49830	15562	34654	34707	55238	55238					0.05800168154280527
LVIWAVKVN	9	Unmodified	_LVIWAVKVN_					0	0	0		nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000163485|ENST00000337894|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2730102539062	2	521.326402	1040.63825	-0.314	-0.0001637	-0.04144	-2.1604E-05	-0.35544	-0.0001853	521.3260670948115	61.48	0.33294	61.266	61.083	61.416	-0.21375					10	7	2	0	0	0	0.024466	1	6881	6881		33.516	8.0654	1	94484			49831	7086	34655	34708	55239	55239					0.11955800616328816
LVIWAVKVN	9	Unmodified	_LVIWAVKVN_					0	0	0		nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000163485|ENST00000337894|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.326402	1040.63825	-0.18865	-9.8349E-05	-0.5089	-0.0002653	-0.69755	-0.00036365	521.3259973804813	61.317	0.38263	61.317	61.07	61.453	0	0.066493	-2.503E-05	NaN	25.45	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80696			49832	7086	34655	34708							0.11955800616328816
LVIWAVKVN	9	Unmodified	_LVIWAVKVN_					0	0	0		nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000163485|ENST00000337894|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.326402	1040.63825	0.058195	3.0339E-05	-1.1495	-0.00059924	-1.0913	-0.00056891	521.3257808647558	61.482	0.37717	61.255	61.118	61.495	-0.22663	0.0051806	-0.00069291	NaN	25.45	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125420			49833	7086	34655	34708							0.11955800616328816
LVIWAVKVN	9	Unmodified	_LVIWAVKVN_					0	0	0		nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000163485|ENST00000337894|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.326402	1040.63825	0.015917	8.298E-06	-0.61241	-0.00031927	-0.5965	-0.00031097	521.3261853531977	61.223	0.41708	61.294	61.095	61.512	0.071125	0.043816	-0.00013296	NaN	25.45	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225010			49834	7086	34655	34708							0.11955800616328816
LVIWLCDLWPR	11	Unmodified	_LVIWLCDLWPR_					0	0	0			REV__ENSG00000171044|ENST00000416569|XKR6	REV__ENSG00000171044|ENST00000416569|XKR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.3107604980469	3	471.928564	1412.76386	-0.11083	-5.2303E-05	-0.56062	-0.00026457	-0.67145	-0.00031688	472.2626396453991	34.071	0.79202	34.121	33.726	34.518	0.050255					34	19	3	0	0	0	0.024813	1	2502	2502		26.063	11.977	1	72072	+		49835	26532	34656	34709	55240	55240					0.07399144410214831
LVIYLRFHNLY	11	Unmodified	_LVIYLRFHNLY_					0	0	0		nc|ENSG00000143028|Q5VXT5-2|SYPL2;ENSG00000143028|ENST00000369872|SYPL2	nc|ENSG00000143028|Q5VXT5-2|SYPL2	nc|ENSG00000143028|Q5VXT5-2|SYPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.25372314453125	3	484.278362	1449.81326	0.18923	9.1641E-05	-1.1784	-0.00057066	-0.98914	-0.00047902	484.27614737531894	52.773	0.58781	52.626	52.209	52.797	-0.14723					27	14	3	0	0	0	0.024782	1	5587	5587		19.263	0.73163	1	678720			49836	5602	34657	34710	55241	55241					0.10634175690734082
LVKAHLKT	8	Unmodified	_LVKAHLKT_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.26129150390625	2	455.297645	908.580737	-0.57253	-0.00026067	-1.9501	-0.00088786	-2.5226	-0.0011485	455.2966144588147	29.341	0.21424	29.168	29.07	29.284	-0.17258					6	4	2	0	0	0	0.027866	1	1779	1779		12.207	5.0135	1	15995	+		49837	20632	34658	34711	55242	55242					0.1227895841074087
LVKARVSYGA	10	Unmodified	_LVKARVSYGA_					0	0	0			REV__PCDHGA12|p.A329V|1|0.29|ENSG00000253159|chr5:141431745-141431745|C/T|missense_variant	REV__PCDHGA12|p.A329V|1|0.29|ENSG00000253159|chr5:141431745-141431745|C/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	532.3193969726562	2	532.316566	1062.61858	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.871	1	99.871	99.371	100.37	0								0	0	0	0.76217	1	12772	12772		49.536	16.724	1		+		49838	37359	34659	34712	55243	55243					0.0897742460556401
LVKASHVI	8	Unmodified	_LVKASHVI_					0	0	0			REV__ENST00000314393.5_1_8:123985618-123985864:+|nuORF	REV__ENST00000314393.5_1_8:123985618-123985864:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.77679443359375	2	433.776545	865.538538	-0.026843	-1.1644E-05	0.10339	4.4847E-05	0.076544	3.3203E-05	433.77642401523036	31.743	1.0964	31.586	31.227	32.324	-0.15741					54	26	3	0	0	0	0.74904	1	2135	2135		63.306	5.495	1	1245100	+		49839	30243	34660	34713	55244	55244					0.10038983002368695
LVKELNTLY	9	Unmodified	_LVKELNTLY_					0	0	0			REV__ENST00000519632.5_1_6:146239221-146248402:-|nuORF	REV__ENST00000519632.5_1_6:146239221-146248402:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.81982421875	2	546.818607	1091.62266	-0.89911	-0.00049165	0.32108	0.00017557	-0.57803	-0.00031608	546.8188712890303	64.701	1.1849	64.446	63.999	65.184	-0.25563					80	29	5	0	0	0	0.30449	1	7333	7333		75.043	2.1641	1	9862300	+		49840	34262	34661	34714	55245	55245					0.08051469308611559
LVKEMACLSL	10	Unmodified	_LVKEMACLSL_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8057861328125	2	553.801045	1105.58754	0.38283	0.00021201	1.674	0.00092709	2.0569	0.0011391	553.8022475853755	68.27	1.0021	68.036	67.797	68.799	-0.23376					36	24	2	0	0	0	0.45418	1	7873	7873		93.143	5.4468	1	1279400	+		49841	19695	34662	34715	55246	55246					0.0389676718480132
LVKEVTKLI	9	Unmodified	_LVKEVTKLI_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.812744140625	2	521.847167	1041.67978	-0.37525	-0.00019582	-1.5561	-0.00081203	-1.9313	-0.0010079	521.8465310285566	41.343	0.244	41.343	41.225	41.469	0					9	6	2	0	0	0	0.024541	1	3709	3709		15.642	4.1308	1	93439			49842	10042	34663	34716	55247	55247					0.16060936584972296
LVKFTGSLKN	10	Unmodified	_LVKFTGSLKN_					0	0	0			REV__ENST00000375859.3_1_9:91091230-91091383:+|nuORF	REV__ENST00000375859.3_1_9:91091230-91091383:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8297729492188	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	1.1088	1	10658	10658		31.53	1.0262	1	1623500	+		49843	31341	34664	34717	55248	55248					0.10094577919812764
LVKFWADLN	9	Unmodified	_LVKFWADLN_					0	0	0		ENSG00000007866|ENST00000338863|TEAD3;nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000074219|Q15562-3|TEAD2;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000187079|ENST00000527636|TEAD1;ENSG00000197905|ENST00000359864|TEAD4;nc|ENSG00000074219|Q15562|TEAD2;nc|ENSG00000074219|Q15562-2|TEAD2;ENSG00000074219|ENST00000593945|TEAD2	ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7667846679688	2	553.305667	1104.59678	-0.52795	-0.00029212	3.4489	0.0019083	2.9209	0.0016162	553.8084348178514	61.503	0.37417	61.245	61.049	61.423	-0.25725					10	8	2	0	0	0	0.024427	1	6888	6888		34.173	5.023	1	159010			49844	825	34665	34718	55249	55249					0.048666198569890184
LVKGSPAW	8	Unmodified	_LVKGSPAW_					0	0	0		ENSG00000114646|ENST00000264723|CSPG5;nc|ENSG00000114646|O95196|CSPG5	ENSG00000114646|ENST00000264723|CSPG5	ENSG00000114646|ENST00000264723|CSPG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.22991943359375	2	429.247621	856.480688	-0.48593	-0.00020858	-3.6526	-0.0015679	-4.1385	-0.0017765	429.2459064320564	27.748	0.69381	27.58	27.273	27.967	-0.16816					21	16	2	0	0	0	0.027866	1	1566	1566		26.796	2.5934	1	162770			49845	3372	34666	34719	55250	55250					0.046707210769341145
LVKGWKAD	8	Unmodified	_LVKGWKAD_					0	0	0		ENSG00000198754|ENST00000327582|OXCT2	ENSG00000198754|ENST00000327582|OXCT2	ENSG00000198754|ENST00000327582|OXCT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2742004394531	2	458.766178	915.517802	-0.27457	-0.00012597	-1.4818	-0.00067982	-1.7564	-0.00080579	458.76615173549067	34.475	0.48175	34.268	34.043	34.525	-0.20695					16	11	2	0	0	0	0.027866	1	2533	2533		38.806	0	1	173550			49846	10189	34667	34720	55251	55251					0.056663926226860895
LVKHGIKKG	9	Unmodified	_LVKHGIKKG_					0	0	0		ENSG00000111058|ENST00000548058|ACSS3;ENST00000548387.1_1_12:81528603-81537122:+|nuORF	ENSG00000111058|ENST00000548058|ACSS3	ENSG00000111058|ENST00000548058|ACSS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.3107604980469	2	490.324194	978.633835	0.68643	0.00033657	-0.8528	-0.00041815	-0.16638	-8.1578E-05	490.32366425228327	17.803	0.34943	17.649	17.458	17.807	-0.15403					15	6	3	0	0	0	0.024541	1	215	215		12.207	7.5251	1	100170			49847	3085	34668	34721	55252	55252					0.14366336193415918
LVKIRSKE	8	Unmodified	_LVKIRSKE_					0	0	0		nc|ENSG00000196383|P0C623|OR4Q2	nc|ENSG00000196383|P0C623|OR4Q2	nc|ENSG00000196383|P0C623|OR4Q2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.8135681152344	2	486.813659	971.612765	-0.0018056	-8.7897E-07	-0.6097	-0.00029681	-0.61151	-0.00029769	486.8133579342013	21.59	1.0108	21.4	21.078	22.089	-0.19072					64	20	5	0	0	0	0.6536	1	687	687		71.296	1.6681	1	2962300			49848	18624	34669	34722	55253	55253					0.12582326093888696
LVKIWLLVP	9	Unmodified	_LVKIWLLVP_					0	0	0		nc|ENSG00000183674|Q8N0U6|LINC00518	nc|ENSG00000183674|Q8N0U6|LINC00518	nc|ENSG00000183674|Q8N0U6|LINC00518	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.83154296875	2	540.862621	1079.71069	-1.7146	-0.00092738	2.8974	0.0015671	1.1827	0.00063969	540.8643970759016	75.288	0.28764	75.288	75.194	75.481	0					10	7	2	0	0	0	0.024487	1	9269	9269		40.573	17.53	1	395400			49849	18579	34670	34723	55254	55254					0.17402134689905324
LVKKEELT	8	Unmodified	_LVKKEELT_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000428062.1_1_13:37512878-37513004:-|nuORF;ENST00000485101.5_1_3:186504293-186504446:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2	ENSG00000161960|ENST00000293831|EIF4A1;ENST00000492144.5_1_3:186503809-186505672:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2918701171875	2	480.292225	958.569897	-0.70313	-0.00033771	0.67705	0.00032518	-0.026081	-1.2526E-05	480.2924107976706	27.365	0.63834	27.197	26.931	27.57	-0.16816					39	14	4	0	0	0	0.6536	1	1512	1512		71.296	2.5089	1	1562700			49850	6905;6564	34671	34724	55255	55255					0.08895511245793841
LVKKEKIL	8	Unmodified	_LVKKEKIL_					0	0	0		ENST00000510291.5_1_6:82923995-82924100:-|nuORF	ENST00000510291.5_1_6:82923995-82924100:-|nuORF	ENST00000510291.5_1_6:82923995-82924100:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.8365173339844	2	485.836603	969.658653	-1.0033	-0.00048742	0.8919	0.00043332	-0.11137	-5.4106E-05	485.8369188835123	33.741	1.1476	33.566	33.226	34.374	-0.17557					70	28	4	0	0	0	0.88442	1	2404	2404		52.299	4.3836	1	4470500			49851	15820	34672	34725	55256	55256					0.17260971276130022
LVKKFKVE	8	Unmodified	_LVKKFKVE_					0	0	0		nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK;ENSG00000156110|ENST00000539909|ADK;VCL-ADK|9|fusion;VCL-ADK|11|fusion;nc|ENSG00000156110|P55263-3|ADK;VCL-ADK|10|fusion	nc|ENSG00000156110|P55263-4|ADK	nc|ENSG00000156110|P55263-4|ADK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2513427734375	2	495.820953	989.627353	-0.57018	-0.00028271	0.67436	0.00033436	0.10418	5.1654E-05	495.8211873708593	60.848	0.48866	60.919	60.714	61.203	0.071129					31	12	3	0	0	0	0.027866	1	6971	6971		35.201	22.994	1	507680			49852	6513	34673	34726	55257	55257					0.13212398242035306
LVKKLVDPL	9	Unmodified	_LVKKLVDPL_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7871704101562	2	512.841885	1023.66922	-0.27853	-0.00014284	1.8796	0.00096394	1.6011	0.0008211	512.8426808498422	71.133	0.18878	71.144	71.05	71.239	0.010735					6	4	2	0	0	0	0.024323	1	8546	8546		44.117	1.7207	1	32723	+		49853	20382	34674	34727	55258	55258					0.15832953930544136
LVKKQGNFI	9	Unmodified	_LVKKQGNFI_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8229370117188	2	523.821484	1045.62842	0.44531	0.00023327	2.6435	0.0013847	3.0888	0.001618	523.8227315094858	18.79	0.59282	18.587	18.411	19.004	-0.20371					22	11	3	0	0	0	0.43973	1	345	345		63.306	3.0123	1	519710	+		49854	26475	34675	34728	55259	55259					0.1074261261094307
LVKKVKLF	8	Unmodified	_LVKKVKLF_					0	0	0		ENST00000476142.1_1_3:56651192-56651654:+|nuORF	ENST00000476142.1_1_3:56651192-56651654:+|nuORF	ENST00000476142.1_1_3:56651192-56651654:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.797607421875	2	487.841688	973.668823	-0.16704	-8.149E-05	1.4159	0.00069074	1.2489	0.00060925	487.8426329340049	50.147	0.15952	50.228	50.117	50.276	0.08099					5	4	2	0	0	0	0.027866	1	5164	5164		21.702	0	1	90677			49855	15082	34676	34729	55260	55260					0.18093579001356375
LVKLDEMLN	9	Unmodified	_LVKLDEMLN_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7966918945312	2	537.796817	1073.57908	-0.15802	-8.4984E-05	0.26332	0.00014161	0.1053	5.6629E-05	537.7968506342702	77.823	3.8719	77.613	76.789	80.661	-0.21087					197	92	3	0	0	0	0.22902	1	9599	9599		85.161	0	1	2474600	+		49856	20082	34677	34730	55261	55261					0.045235365398411886
LVKLFTFAM	9	Unmodified	_LVKLFTFAM_					0	0	0			REV__ENST00000474281.1_1_X:77378368-77378476:+|nuORF	REV__ENST00000474281.1_1_X:77378368-77378476:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.3192138671875	2	535.309364	1068.60417	-0.74509	-0.00039886	0.42447	0.00022722	-0.32062	-0.00017163	535.3097289225168	33.788	0.39958	33.845	33.654	34.054	0.056572					21	9	3	0	0	0	0.024436	1	2393	2393		23.042	3.0457	1	92109	+		49857	21291	34678	34731	55262	55262					0.07261636133034699
LVKLFTFAM	9	Unmodified	_LVKLFTFAM_					0	0	0			REV__ENST00000474281.1_1_X:77378368-77378476:+|nuORF	REV__ENST00000474281.1_1_X:77378368-77378476:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.309364	1068.60417	-0.32086	-0.00017176	-0.066726	-3.5719E-05	-0.38758	-0.00020748	535.3092799957537	33.939	0.40037	33.715	33.522	33.923	-0.22412	-0.050628	-0.00041471	NaN	23.042	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126730	+		49858	21291	34678	34731							0.07261636133034699
LVKLFTFAM	9	Unmodified	_LVKLFTFAM_					0	0	0			REV__ENST00000474281.1_1_X:77378368-77378476:+|nuORF	REV__ENST00000474281.1_1_X:77378368-77378476:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.309364	1068.60417	-1.7266	-0.00092425	1.0972	0.00058734	-0.62938	-0.00033691	535.3097119139077	33.965	0.38884	33.789	33.545	33.934	-0.17557	0.023564	0.0008314	NaN	23.042	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93658	+		49859	21291	34678	34731							0.07261636133034699
LVKLKGRNF	9	Unmodified	_LVKLKGRNF_					0	0	0			REV__ENSG00000170606|ENST00000304858|HSPA4	REV__ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.78076171875	2	537.842751	1073.67095	-1.1034	-0.00059344	0.010109	5.4372E-06	-1.0933	-0.00058801	537.8428656358417	35.593	0.47788	35.637	35.42	35.898	0.04406					16	11	2	0	0	0	0.024436	1	2675	2675		38.806	3.6054	1	78511	+		49860	26489	34679	34732	55263	55263					0.13706007739165216
LVKLLLSK	8	Unmodified	_LVKLLLSK_					0	0	0		nc|ENSG00000181090|Q9H9B1-3|EHMT1;ENSG00000181090|ENST00000460843|EHMT1	nc|ENSG00000181090|Q9H9B1-3|EHMT1	nc|ENSG00000181090|Q9H9B1-3|EHMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.76629638671875	2	457.325871	912.637189	-0.01493	-6.8277E-06	-1.1533	-0.00052742	-1.1682	-0.00053425	457.3257274607827	23.144	0.16584	23.144	23.079	23.245	0					5	3	2	0	0	0	0.027866	1	875	875		17.365	0	1	24186			49861	9023	34680	34733	55264	55264					0.1773758624740367
LVKLNYHS	8	Unmodified	_LVKLNYHS_					0	0	0		nc|ENSG00000214198|Q6P2S7|TTC41P;ENST00000551270.1_1_12:104237536-104277386:-|nuORF	nc|ENSG00000214198|Q6P2S7|TTC41P	nc|ENSG00000214198|Q6P2S7|TTC41P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79803466796875	2	487.276909	972.539266	-0.1165	-5.6766E-05	0.47798	0.00023291	0.36148	0.00017614	487.27661525405153	50.646	0.13737	50.497	50.39	50.528	-0.14916					5	3	2	0	0	0	0.027866	1	5285	5285		19.36	7.1531	1	50400			49862	18715	34681	34734	55265	55265					0.0518977765142381
LVKLPDRP	8	Unmodified	_LVKLPDRP_					0	0	0			REV__nc|ENSG00000151779|A2RRP1-2|NBAS	REV__nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2901306152344	2	469.295102	936.575651	-0.21493	-0.00010086	-3.8439	-0.0018039	-4.0588	-0.0019048	469.29507488630117	27.443	0.70573	27.524	27.245	27.951	0.081291					44	18	4	0	0	0	0.027866	1	1500	1500		37.159	0	1	268570	+		49863	24796	34682	34735	55266	55266					0.10482654548127357
LVKMKRNY	8	Unmodified	_LVKMKRNY_					0	0	0		ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2320556640625	2	526.307687	1050.60082	0.1268	6.6737E-05	-3.6148	-0.0019025	-3.488	-0.0018358	526.3056891303213	50.821	0.44147	50.545	50.299	50.74	-0.27643					18	11	2	0	0	0	0.027866	1	5137	5137		35.201	8.5078	1	218860			49864	16628	34683	34736	55267	55267					0.07754386079068354
LVKMKRNY	8	Unmodified	_LVKMKRNY_					0	0	0		ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.307687	1050.60082	-1.2041	-0.00063371	2.0097	0.0010577	0.80563	0.00042401	526.3086258301379	50.429	0.39893	50.429	50.21	50.609	0	-0.018954	0.0020135	NaN	44.531	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706350			49865	16628	34683	34736							0.07754386079068354
LVKMKRNY	8	Unmodified	_LVKMKRNY_					0	0	0		ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.307687	1050.60082	-0.30462	-0.00016032	1.0489	0.00055203	0.74425	0.0003917	526.308053445493	50.661	0.40063	50.511	50.256	50.657	-0.14916	0.063303	0.0010021	NaN	44.531	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701700			49866	16628	34683	34736							0.07754386079068354
LVKMKRNY	8	Unmodified	_LVKMKRNY_					0	0	0		ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	ENST00000552994.5_1_12:72038755-72038851:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.307687	1050.60082	0.31592	0.00016627	0.2205	0.00011605	0.53642	0.00028232	526.307772782015	50.267	0.39639	50.348	50.18	50.576	0.080994	-0.10003	0.00013013	NaN	44.531	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612110			49867	16628	34683	34736							0.07754386079068354
LVKMKTTEA	9	Unmodified	_LVKMKTTEA_					0	0	0			REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	REV__nc|ENSG00000183981|A6NCF6|MAGEA13P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2779235839844	2	510.791535	1019.56852	-0.56106	-0.00028659	-2.4007	-0.0012262	-2.9617	-0.0015128	510.7901103570476	73.505	0.75476	73.24	72.852	73.607	-0.26479					41	18	3	0	0	0	0.024381	1	8607	8607		37.159	2.0071	1	709850	+		49868	37008	34684	34737	55268	55268					0.059515538853816
LVKNSWGPE	9	Unmodified	_LVKNSWGPE_					0	0	0		ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	ENSG00000136943|ENST00000259470|CTSV	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2718505859375	2	515.271824	1028.5291	-0.78707	-0.00040555	-0.30195	-0.00015559	-1.089	-0.00056114	515.2719402694694	63.127	1.054	63.127	62.612	63.666	0					55	27	3	0	0	0	0.42604	1	7359	7359		64.207	9.431	1	2826200			49869	5074	34685	34738	55269	55269					0.015971699261854155
LVKNVVLKVGE	11	Unmodified	_LVKNVVLKVGE_					0	0	0			REV__nc|ENSG00000158882|Q969M1-2|TOMM40L	REV__nc|ENSG00000158882|Q969M1-2|TOMM40L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.3798828125	2	599.381906	1196.74926	0.054084	3.2417E-05	-3.2712	-0.0019607	-3.2171	-0.0019283	599.3798319820231	102.48	0.58797	102.31	102.05	102.64	-0.17178					47	13	5	0	0	0	1.0344	1	12734	12734		29.17	0	1	851410	+		49870	25225	34686	34739	55270	55270					0.15875395533726078
LVKPPVKS	8	Unmodified	_LVKPPVKS_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-4|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.27410888671875	2	434.286746	866.558939	0.047087	2.0449E-05	-3.8942	-0.0016912	-3.8471	-0.0016707	434.2851685538161	54.85	0.14571	54.619	54.565	54.711	-0.23087					5	3	2	0	0	0	0.027866	1	5847	5847		30.504	0	1	58316			49871	8503	34687	34740	55271	55271					0.12032153662175915
LVKQFLPR	8	Unmodified	_LVKQFLPR_					0	0	0			REV__ENST00000497891.1_1_7:143098260-143104736:-|nuORF	REV__ENST00000497891.1_1_7:143098260-143104736:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2533264160156	2	500.818744	999.622936	-0.071941	-3.6029E-05	-2.3739	-0.0011889	-2.4459	-0.0012249	500.81743842266644	95.318	0.68495	95.318	95.136	95.821	0					25	15	2	0	0	0	0.027866	1	12196	12196		35.201	4.6971	1	69910	+		49872	33861	34688	34741	55272	55272					0.12310933819117054
LVKQTKVEG	9	Unmodified	_LVKQTKVEG_					0	0	0		ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3026428222656	2	501.303124	1000.5917	-0.57399	-0.00028774	-0.086292	-4.3258E-05	-0.66028	-0.000331	501.30296177072506	25.587	0.86431	25.415	24.993	25.857	-0.17151					41	20	3	0	0	0	0.23085	1	1209	1209		84.916	8.1414	1	1868100			49873	6889	34689	34742	55273	55273					0.09142315994370165
LVKREDYLY	9	Unmodified	_LVKREDYLY_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.2206115722656	3	400.220401	1197.63937	0.17293	6.921E-05	-0.04591	-1.8374E-05	0.12702	5.0836E-05	400.22025567571495	40.564	1.2419	40.414	40.078	41.32	-0.1497					69	32	4	0	0	0	0.70186	1	3530	3530		62.107	0	1	2147000			49874	6198	34690	34743	55274	55274					0.04845970194560323
LVKREDYLY	9	Unmodified	_LVKREDYLY_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	400.220401	1197.63937	0.98819	0.00039549	-0.67987	-0.0002721	0.30832	0.0001234	400.2200566031837	40.749	0.90272	40.524	40.259	41.162	-0.225	0.013609	-0.0011666	NaN	62.107	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2124800			49875	6198	34690	34743							0.04845970194560323
LVKREDYLY	9	Unmodified	_LVKREDYLY_					0	0	0		ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	ENSG00000151366|ENST00000281031|NDUFC2	ENSG00000151366|ENST00000281031|NDUFC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.220401	1197.63937	-1.6411	-0.00065681	2.1467	0.00085915	0.50556	0.00020234	400.22112536061167	40.824	0.84937	40.593	40.308	41.157	-0.23029	0.082822	0.0022271	NaN	62.107	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1596700			49876	6198	34690	34743							0.04845970194560323
LVKRKKSN	8	Unmodified	_LVKRKKSN_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.79534912109375	2	486.819276	971.623999	-0.57455	-0.0002797	4.4864	0.0021841	3.9119	0.0019044	486.8212943857167	37.034	0.54635	36.814	36.567	37.114	-0.2195					28	13	3	0	0	0	0.027866	1	2911	2911		25.45	1.2474	1	349060			49877	4468	34691	34744	55275	55275					0.13705148188034855
LVKRKQEL	8	Unmodified	_LVKRKQEL_					0	0	0		ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-2|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6	ENSG00000163875|ENST00000296214|MEAF6	ENSG00000163875|ENST00000296214|MEAF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.32672119140625	2	507.326934	1012.63931	0.064686	3.2817E-05	-0.19855	-0.00010073	-0.13386	-6.7913E-05	507.32676726050755	19.96	0.43053	19.792	19.571	20.002	-0.16774					15	8	2	0	0	0	0.6536	1	486	486		71.296	10.324	1	682020			49878	7164	34692	34745	55276	55276					0.1335001498522388
LVKRKQEL	8	Unmodified	_LVKRKQEL_					0	0	0		ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-2|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6	ENSG00000163875|ENST00000296214|MEAF6	ENSG00000163875|ENST00000296214|MEAF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3266296386719	2	507.326934	1012.63931	0.93281	0.00047324	-1.3375	-0.00067854	-0.40467	-0.0002053	507.32629697406406	20.022	0.5304	19.822	19.505	20.035	-0.2001					29	10	4	0	0	0	0.32162	1	487	487		108.09	5.3142	1	659840			49879	7164	34692	34745	55277	55277					0.1335001498522388
LVKSKTLII	9	Unmodified	_LVKSKTLII_					0	0	0			REV__ENST00000374787.7_1_9:106858465-106858540:+|nuORF	REV__ENST00000374787.7_1_9:106858465-106858540:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.302001953125	2	507.84971	1013.68487	0.17002	8.6345E-05	-0.67029	-0.00034041	-0.50027	-0.00025406	507.8492979229308	55.843	0.56579	55.843	55.573	56.139	0					33	15	3	0	0	0	0.024427	1	6196	6196		26.693	0	1	558360	+		49880	31307	34693	34746	55278	55278					0.17857240447631284
LVKTFLIIT	9	Unmodified	_LVKTFLIIT_					0	0	0			REV__nc|ENSG00000086200|Q9UI26-2|IPO11	REV__nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3135375976562	2	524.344261	1046.67397	-1.215	-0.00063708	0.76713	0.00040224	-0.44788	-0.00023484	524.3453182665272	73.281	0.21893	73.281	73.219	73.438	0					7	5	2	0	0	0	0.024541	1	8949	8949		24.203	7.7296	1	118370	+		49881	20769	34694	34747	55279	55279					0.15249838073305
LVKTKEEL	8	Unmodified	_LVKTKEEL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENST00000486888.1_1_3:104221713-104221830:+|nuORF	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2921142578125	2	480.292225	958.569897	0.21028	0.000101	-0.51958	-0.00024955	-0.3093	-0.00014855	480.2918478664761	27.501	0.60428	27.259	27.076	27.68	-0.24217					37	13	4	0	0	0	0.32162	1	1536	1536		108.09	20.333	1	1601300			49882	1995	34695	34748	55280	55280					0.08895511245793841
LVKTKEEL	8	Unmodified	_LVKTKEEL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENST00000486888.1_1_3:104221713-104221830:+|nuORF	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2922668457031	2	480.292225	958.569897	-0.70313	-0.00033771	0.67705	0.00032518	-0.026081	-1.2526E-05	480.2924107976706	27.365	0.63834	27.197	26.931	27.57	-0.16816					39	14	4	0	0	0	0.62178	1	1498	1498		74.255	0.28031	1	1562700			49883	1995	34695	34748	55281	55281					0.08895511245793841
LVKTKEEL	8	Unmodified	_LVKTKEEL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENST00000486888.1_1_3:104221713-104221830:+|nuORF	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.29150390625	2	480.292225	958.569897	0.062014	2.9785E-05	-0.084299	-4.0488E-05	-0.022286	-1.0704E-05	480.2921323649648	27.525	0.57973	27.369	27.145	27.724	-0.15664					32	13	4	0	0	0	0.44658	1	1505	1505		90.777	8.4716	1	2007300			49884	1995	34695	34748	55282	55282					0.08895511245793841
LVKTKEIE	8	Unmodified	_LVKTKEIE_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2919921875	2	480.292225	958.569897	0.21028	0.000101	-0.51958	-0.00024955	-0.3093	-0.00014855	480.2918478664761	27.501	0.60428	27.259	27.076	27.68	-0.24217					37	13	4	0	0	0	0.44658	1	1524	1524		90.777	5.8611	1	1601300	+		49885	22942	34696	34749	55283	55283					0.0889551124580521
LVKTLLKLD	9	Unmodified	_LVKTLLKLD_					0	0	0			REV__ENST00000554026.5_1_14:76548780-76549917:+|nuORF	REV__ENST00000554026.5_1_14:76548780-76549917:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2896118164062	2	521.847167	1041.67978	-0.17026	-8.8852E-05	-0.86163	-0.00044964	-1.0319	-0.00053849	521.8468069868808	57.1	0.20632	56.936	56.876	57.083	-0.16432					6	5	2	0	0	0	0.024484	1	6375	6375		30.318	5.7985	1	38002	+		49886	22469	34697	34750	55284	55284					0.16060936584972296
LVKTLVFF	8	Unmodified	_LVKTLVFF_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.7898864746094	2	483.804771	965.59499	0.059723	2.8894E-05	2.6286	0.0012717	2.6883	0.0013006	483.80525327592926	36.566	0.23964	36.361	36.203	36.443	-0.20518					6	5	2	0	0	0	0.027866	1	2878	2878		40.573	10.069	1	48570			49887	2366	34698	34751	55285	55285					0.11081610839039513
LVKVAEIVT	9	Unmodified	_LVKVAEIVT_					0	0	0			REV__nc|ENSG00000094841|Q96BW1-3|UPRT	REV__nc|ENSG00000094841|Q96BW1-3|UPRT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2806701660156	2	486.310418	970.606283	-0.54064	-0.00026292	1.2274	0.00059691	0.68679	0.00033399	486.31119569265945	70.49	0.50517	70.502	70.308	70.813	0.012421					15	11	2	0	0	0	0.023181	1	8417	8417		82.305	0	1	160520	+		49888	20950	34699	34752	55286	55286					0.11980388142512766
LVKVKVLL	8	Unmodified	_LVKVKVLL_					0	0	0		ENSG00000032219|ENST00000355431|ARID4A;ARID4A|p.D569Wfs*5|1|0.31|ENSG00000032219|chr14:58353706-58353709|AGAC/-|frameshift_variant;nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2341003417969	2	456.336239	910.657924	-0.17458	-7.9668E-05	0.11698	5.3383E-05	-0.057598	-2.6284E-05	456.3361306047584	51.274	0.57635	50.997	50.816	51.393	-0.27643					20	14	2	0	0	0	0.027866	1	5249	5249		25.45	0	1	157500			49889	1014	34700	34753	55287	55287					0.19902176627078916
LVKVLEVIK	9	Unmodified	_LVKVLEVIK_					0	0	0			REV__CON__P34955	REV__CON__P34955	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2411499023438	2	520.857535	1039.70052	-0.72832	-0.00037935	0.1715	8.9328E-05	-0.55682	-0.00029002	520.8574743760273	76.051	0.50102	75.779	75.542	76.043	-0.27267					26	12	3	0	0	0	0.024541	1	9021	9021		16.473	4.2663	1	262660	+	+	49890	19560	34701	34754	55288	55288					0.18225526964647543
LVKVLIKLL	9	Unmodified	_LVKVLIKLL_					0	0	0			REV__KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant	REV__KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8207397460938	2	519.886096	1037.75764	-0.91958	-0.00047808	-3.5488	-0.0018449	-4.4683	-0.002323	519.8846636074895	80.665	0.36045	80.665	80.5	80.861	0					15	8	3	0	0	0	0.024541	1	10016	10016		7.6903	3.705	1	200300	+		49891	36193	34702	34755	55289	55289					0.24026994241035027
LVKVTLTSE	9	Unmodified	_LVKVTLTSE_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2812194824219	2	495.297507	988.580462	3.0664	0.0015188	1.3773	0.00068218	4.4438	0.002201	495.2980398172689	18.297	0.24583	18.297	18.136	18.382	0					7	4	2	0	0	0	0.024541	1	279	279		21.96	9.0007	1	22595			49892	4786	34703	34756	55290	55290					0.08571493900240057
LVKVTLTSE	9	Unmodified	_LVKVTLTSE_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.297507	988.580462	0.20514	0.00010161	3.3595	0.0016639	3.5646	0.0017655	495.2987727089138	18.423	0.2469	18.291	18.154	18.401	-0.13148	-0.0027371	0.001278	NaN	21.96	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22200			49893	4786	34703	34756							0.08571493900240057
LVKWARRLP	9	Unmodified	_LVKWARRLP_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.82177734375	2	569.864018	1137.71348	-1.4351	-0.0008178	-1.4776	-0.00084205	-2.9127	-0.0016598	569.863171389029	51.953	0.15171	52.045	51.967	52.119	0.091942					5	3	2	0	0	0	0.024541	1	5472	5472		7.6903	0	1	54416	+		49894	24158	34704	34757	55291	55291					0.15013402867384684
LVLACGAALL	10	Unmodified	_LVLACGAALL_					0	0	0			REV__ENSG00000128294|ENST00000338754|TPST2	REV__ENSG00000128294|ENST00000338754|TPST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2881164550781	2	472.285889	942.557224	0.48131	0.00022732	3.1588	0.0014918	3.6401	0.0017192	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.1309	1	11711	11711		26.796	1.222	1	42478000	+		49895	22977	34705	34758	55292	55292					0.08364776581913702
LVLAIGYRAS	10	Unmodified	_LVLAIGYRAS_					0	0	0			REV__nc|ENSG00000124564|O00476|SLC17A3	REV__nc|ENSG00000124564|O00476|SLC17A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8168334960938	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	1.089	1	11007	11007		34.173	7.4796	1	3781500	+		49896	22772	34706	34759	55293	55293					0.09498308748334239
LVLAIGYRAS	10	Unmodified	_LVLAIGYRAS_					0	0	0			REV__nc|ENSG00000124564|O00476|SLC17A3	REV__nc|ENSG00000124564|O00476|SLC17A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8165893554688	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.88896	1	10702	10702		54.776	13.998	1	4853400	+		49897	22772	34706	34759	55294	55294					0.09498308748334239
LVLAIGYRAS	10	Unmodified	_LVLAIGYRAS_					0	0	0			REV__nc|ENSG00000124564|O00476|SLC17A3	REV__nc|ENSG00000124564|O00476|SLC17A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8170166015625	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.0393	1	10712	10712		40.778	1.5253	1	4521600	+		49898	22772	34706	34759	55295	55295					0.09498308748334239
LVLAIMRLTH	10	Unmodified	_LVLAIMRLTH_					0	0	0			REV__ENST00000432329.6_1_2:208464230-208464308:+|nuORF	REV__ENST00000432329.6_1_2:208464230-208464308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.8588256835938	2	583.857544	1165.70053	-0.4186	-0.0002444	2.6006	0.0015184	2.182	0.001274	583.8588726706961	96.987	1.2388	96.995	96.575	97.813	0.0089111					82	27	5	0	0	0	1.0781	1	12345	12345		35.618	8.9254	1	1557300	+		49899	32380	34707	34760	55296	55296					0.12431203693017778
LVLAKSEL	8	Unmodified	_LVLAKSEL_					0	0	0		ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.77471923828125	2	436.776211	871.537869	-0.42442	-0.00018538	-2.8951	-0.0012645	-3.3196	-0.0014499	436.77487826052743	90.03	2.3328	90.03	89.44	91.772	0					165	55	5	0	0	0	0.97924	1	11361	11361		40.573	0	1	38190000			49900	12778	34708	34761	55297	55297					0.09696143562666748
LVLAKSEL	8	Unmodified	_LVLAKSEL_					0	0	0		ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.7747802734375	2	436.776211	871.537869	0.28535	0.00012463	-3.604	-0.0015741	-3.3186	-0.0014495	436.7745739222148	90.041	2.3328	90.025	89.541	91.873	-0.016708					171	55	5	0	0	0	1.0338	2	11361	11361;11373		31.955	0	1	37030000			49901	12778	34708	34761	55298;55299	55298					0.09696143562666748
LVLAKSEL	8	Unmodified	_LVLAKSEL_					0	0	0		ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.7746276855469	2	436.776211	871.537869	-0.98134	-0.00042863	-2.2927	-0.0010014	-3.2741	-0.00143	436.7751362763108	90.163	2.4309	90.008	89.479	91.91	-0.1552					175	57	5	0	0	0	0.97924	2	11036	11012;11036		40.573	0	1	32770000			49902	12778	34708	34761	55300;55301	55301					0.09696143562666748
LVLAKSEL	8	Unmodified	_LVLAKSEL_					0	0	0		ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	ENST00000360830.8_1_10:79797045-79800384:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.77490234375	2	436.776211	871.537869	-0.55494	-0.00024239	-2.6294	-0.0011485	-3.1844	-0.0013909	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	0.97924	2	11026	11026;11074		40.573	0	1	24367000			49903	12778	34708	34761	55302;55303	55302					0.09696143562666748
LVLALADIVWR	11	Unmodified	_LVLALADIVWR_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.8933715820312	2	634.889898	1267.76524	0.12287	7.8009E-05	3.5786	0.002272	3.7014	0.00235	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0718	1	12972	12972		19.104	2.6304	1	1729500			49904	2763	34709	34762	55304	55304					0.14207101770648478
LVLALSLLL	9	Unmodified	_LVLALSLLL_					0	0	0		nc|ENSG00000166405|Q7Z5B4-3|RIC3;nc|ENSG00000166405|Q7Z5B4-6|RIC3;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3;nc|ENSG00000166405|Q7Z5B4-2|RIC3	nc|ENSG00000166405|Q7Z5B4-3|RIC3	nc|ENSG00000166405|Q7Z5B4-3|RIC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8338317871094	2	477.833529	953.652505	0.19865	9.4921E-05	0.15185	7.2557E-05	0.35049	0.00016748	477.833467546802	105.85	1.2379	105.85	105.54	106.78	0.00014496					116	43	4	0	0	0	0.60698	2	13506	13506;13514		52.299	2.2746	1	2681800			49905	7553	34710	34763	55305;55306	55305					0.173824530446268
LVLAPAPLL	9	Unmodified	_LVLAPAPLL_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.74462890625	2	453.804771	905.59499	0.44475	0.00020183	-1.1659	-0.00052907	-0.72112	-0.00032725	453.80438615205975	101.31	0.42554	101.3	101.06	101.49	-0.0054474					11	9	2	0	0	0	0.024541	1	12886	12886		8.8223	4.5061	1	29112	+		49906	22774	34711	34764	55307	55307					0.13841610839028817
LVLARLSKN	9	Unmodified	_LVLARLSKN_					0	0	0			REV__ENST00000263688.3_1_1:172558564-172558603:+|nuORF	REV__ENST00000263688.3_1_1:172558564-172558603:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.3268127441406	2	507.326934	1012.63931	0.064686	3.2817E-05	-0.19855	-0.00010073	-0.13386	-6.7913E-05	507.32676726050755	19.96	0.43053	19.792	19.571	20.002	-0.16774					15	8	2	0	0	0	0.4752	1	499	499		60.972	2.19	1	682020	+		49907	29693	34712	34765	55308	55308					0.1335001498522388
LVLARLSKN	9	Unmodified	_LVLARLSKN_					0	0	0			REV__ENST00000263688.3_1_1:172558564-172558603:+|nuORF	REV__ENST00000263688.3_1_1:172558564-172558603:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3265686035156	2	507.326934	1012.63931	0.43613	0.00022126	-0.44706	-0.0002268	-0.010924	-5.5421E-06	507.3265535981098	20.032	0.58437	19.808	19.533	20.117	-0.22344					25	11	3	0	0	0	0.53979	1	466	466		56.721	7.2795	1	513320	+		49908	29693	34712	34765	55309	55309					0.1335001498522388
LVLASLSH	8	Unmodified	_LVLASLSH_					0	0	0		ENST00000429422.5_2_3:47893409-47893526:-|nuORF	ENST00000429422.5_2_3:47893409-47893526:-|nuORF	ENST00000429422.5_2_3:47893409-47893526:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	420.252903	838.491253	2.1128	0.0008879	-0.24247	-0.0001019	1.8703	0.000786	420.2516375583219	23.737	0.25595	23.546	23.36	23.616	-0.19117					7	5	2	0	0	0	0.027866	1	951	951		44.531	17.735	1	27182			49909	14146	34713	34766	55310	55310					0.06554703731376321
LVLATVGGAV	10	Unmodified	_LVLATVGGAV_					0	0	0		ENSG00000183153|ENST00000578689|GJD3;nc|ENSG00000183153|Q8N144-2|GJD3	ENSG00000183153|ENST00000578689|GJD3	ENSG00000183153|ENST00000578689|GJD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2814025878906	2	450.28166	898.548768	-0.071723	-3.2295E-05	-0.41514	-0.00018693	-0.48686	-0.00021923	450.28148265735507	102.93	0.7944	102.8	102.5	103.29	-0.12783					44	18	4	0	0	0	1.0781	1	12811	12811		35.618	0	1	6408900			49910	9203	34714	34767	55311	55311					0.09543545936946884
LVLAVIFW	8	Unmodified	_LVLAVIFW_					0	0	0		nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.8012390136719	2	480.799489	959.584425	0.25492	0.00012256	2.2284	0.0010714	2.4833	0.001194	480.8004656046571	94.354	2.1881	94.232	93.711	95.899	-0.12215					167	50	6	0	0	0	1.0241	1	11700	11700		33.493	8.0428	1	16484000			49911	10010	34715	34768	55312	55312					0.10301628184595302
LVLCNSCMP	9	Unmodified	_LVLCNSCMP_					0	0	0		ENSG00000179284|ENST00000317060|DAND5	ENSG00000179284|ENST00000317060|DAND5	ENSG00000179284|ENST00000317060|DAND5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27484130859375	2	490.224116	978.43368	-0.52606	-0.00025789	-2.3807	-0.0011671	-2.9068	-0.001425	490.2227960026747	75.903	0.80921	75.903	75.622	76.431	0					40	20	3	0	0	0	0.021616	1	9313	9313		97.473	31.043	1	508460			49912	8887	34716	34769	55313	55313					-0.05639965852367368
LVLCNSCMP	9	Unmodified	_LVLCNSCMP_					0	0	0		ENSG00000179284|ENST00000317060|DAND5	ENSG00000179284|ENST00000317060|DAND5	ENSG00000179284|ENST00000317060|DAND5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2750549316406	2	490.224116	978.43368	-0.44276	-0.00021705	-2.5174	-0.0012341	-2.9601	-0.0014511	490.2227248923879	76.141	0.72206	75.912	75.598	76.32	-0.22843					39	18	3	0	0	0	0.023355	1	9299	9299		88.643	19.55	1	506690			49913	8887	34716	34769	55314	55314					-0.05639965852367368
LVLDQHLD	8	Unmodified	_LVLDQHLD_					0	0	0			REV__ENST00000469141.6_1_1:36748189-36748300:+|nuORF	REV__ENST00000469141.6_1_1:36748189-36748300:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7568664550781	2	476.758549	951.502546	0.83708	0.00039909	-2.2271	-0.0010618	-1.39	-0.0006627	476.7575817068251	100.79	1.3062	100.66	100.28	101.58	-0.13364					59	31	2	0	0	0	0.97924	1	12536	12536		40.573	0	1	172540	+		49914	33126	34717	34770	55315	55315					0.024854810348415413
LVLDRLAQV	9	Unmodified	_LVLDRLAQV_					0	0	0		ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7530517578125	2	513.818941	1025.62333	-0.57971	-0.00029786	0.19471	0.00010004	-0.385	-0.00019782	513.8188832249381	50.512	0.96714	50.593	50.18	51.147	0.08099					58	27	3	0	0	0	0.02435	1	5270	5270		34.173	0	1	1831400			49915	14396	34718	34771	55316	55316					0.11154308748336916
LVLDRLAQV	9	Unmodified	_LVLDRLAQV_					0	0	0		ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.818941	1025.62333	0.15585	8.0078E-05	-0.41435	-0.0002129	-0.2585	-0.00013282	513.8185212283291	50.656	1.1236	50.544	49.966	51.09	-0.11163	-0.048619	-0.00014236	NaN	42.396	48	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	980380			49916	14396	34718	34771							0.11154308748336916
LVLDRLAQV	9	Unmodified	_LVLDRLAQV_					0	0	0		ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.818941	1025.62333	0.26122	0.00013422	-0.3117	-0.00016016	-0.05048	-2.5937E-05	513.8186304770401	50.862	0.59198	50.586	50.299	50.891	-0.27643	-0.0071007	-3.6872E-05	NaN	42.396	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	770650			49917	14396	34718	34771							0.11154308748336916
LVLDRLAQV	9	Unmodified	_LVLDRLAQV_					0	0	0		ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	ENST00000443317.1_1_20:32802260-32803361:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.818941	1025.62333	0.36637	0.00018825	-0.53801	-0.00027644	-0.17164	-8.8191E-05	513.8185206455317	50.701	0.94395	50.521	50.317	51.261	-0.18071	-0.072324	-0.00026944	NaN	42.396	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904410			49918	14396	34718	34771							0.11154308748336916
LVLDRLGPL	9	Unmodified	_LVLDRLGPL_					0	0	0			REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.760498046875	2	498.316035	994.617516	-0.90738	-0.00045216	0.45889	0.00022867	-0.44849	-0.00022349	498.3161372828141	75.396	0.32281	75.396	75.194	75.516	0					11	8	2	0	0	0	0.024292	1	9260	9260		58.782	2.0609	1	130400	+		49919	20840	34719	34772	55317	55317					0.11999210236660929
LVLDTPGHT	9	Unmodified	_LVLDTPGHT_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86;nc|ENSG00000187260|Q86TI4-2|WDR86;ENSG00000187260|ENST00000334493|WDR86;nc|ENSG00000187260|Q86TI4-1|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7579345703125	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.88411	1	13262	13262		33.516	1.5607	1	4565500			49920	18602	34720	34773	55318	55318					0.024854810348642786
LVLEEQEF	8	Unmodified	_LVLEEQEF_					0	0	0		ENST00000550541.1_1_12:29302310-29304559:+|nuORF	ENST00000550541.1_1_12:29302310-29304559:+|nuORF	ENST00000550541.1_1_12:29302310-29304559:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.8002014160156	2	503.758215	1005.50188	0.18109	9.1227E-05	1.6131	0.00081263	1.7942	0.00090385	503.7588756053059	58.377	0.51114	58.377	57.946	58.457	0					24	13	2	0	0	0	0.027866	1	6563	6563		79.939	0	1	425680			49921	16586	34721	34774	55319	55319					-0.000653584048563971
LVLEGGPLA	9	Unmodified	_LVLEGGPLA_					0	0	0		nc|ENSG00000090975|Q9BZ72-2|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7591247558594	2	434.760561	867.506569	0.063598	2.765E-05	-2.9827	-0.0012968	-2.9191	-0.0012691	434.75923619358696	86.978	1.558	86.791	86.167	87.725	-0.18696					82	36	4	0	0	0	0.90698	1	10544	10544		31.955	2.8053	1	6540900			49922	18110	34722	34775	55320	55320					0.06751570528581397
LVLEILYML	9	Unmodified	_LVLEILYML_					0	0	0		ENST00000506256.5_1_6:97707503-97720651:-|nuORF;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000509383.5_1_6:97679279-97717985:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF;ENSG00000146263|ENST00000683635|MMS22L	ENST00000506256.5_1_6:97707503-97720651:-|nuORF	ENST00000506256.5_1_6:97707503-97720651:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.831787109375	2	553.830129	1105.6457	-0.79306	-0.00043922	0.50216	0.00027811	-0.2909	-0.00016111	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	0.85941	1	10792	10792		35.201	7.3185	1	6583300			49923	5870	34723	34776	55321	55321					0.09710772101743714
LVLEILYML	9	Unmodified	_LVLEILYML_					0	0	0		ENST00000506256.5_1_6:97707503-97720651:-|nuORF;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000509383.5_1_6:97679279-97717985:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF;ENSG00000146263|ENST00000683635|MMS22L	ENST00000506256.5_1_6:97707503-97720651:-|nuORF	ENST00000506256.5_1_6:97707503-97720651:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8300170898438	2	553.830129	1105.6457	-0.066307	-3.6723E-05	-0.25986	-0.00014392	-0.32616	-0.00018064	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	0.85941	1	10621	10621		35.201	3.6709	1	1623500			49924	5870	34723	34776	55322	55322					0.09710772101743714
LVLEQPQI	8	Unmodified	_LVLEQPQI_					0	0	0			REV__nc|ENSG00000196209|Q5JXA9-2|SIRPB2	REV__nc|ENSG00000196209|Q5JXA9-2|SIRPB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.27972412109375	2	470.279118	938.543683	0.86215	0.00040545	-0.066088	-3.108E-05	0.79607	0.00037437	470.278938519176	75.58	1.5245	75.59	75.25	76.774	0.010376					85	39	4	0	0	0	0.42327	1	9206	9206		94.006	5.3636	1	3647200	+		49925	28145	34724	34777	55323	55323					0.07195242074340058
LVLEVITK	8	Unmodified	_LVLEVITK_					0	0	0		nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-2|C2CD3;ENST00000415191.6_1_11:73824618-73881837:-|nuORF;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-4|C2CD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.740478515625	2	457.799686	913.584819	-0.73339	-0.00033575	2.0096	0.00092	1.2762	0.00058425	457.8005972073047	28.238	0.445	28.069	27.768	28.213	-0.16897					18	10	2	0	0	0	0.027866	1	1607	1607		10.265	0	1	343530			49926	7770;18486	34725	34778	55324	55324					0.12457003113797782
LVLEVNRH	8	Unmodified	_LVLEVNRH_					0	0	0		sp|P29882|CEP1_EBVB9Cytoplasmicenvelopmentprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF2PE=1SV=1	sp|P29882|CEP1_EBVB9Cytoplasmicenvelopmentprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF2PE=1SV=1	sp|P29882|CEP1_EBVB9Cytoplasmicenvelopmentprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2751159667969	2	490.287808	978.561064	-0.95224	-0.00046687	2.6208	0.001285	1.6686	0.00081808	490.2889440159085	75.567	0.20836	75.567	75.378	75.586	0					8	5	2	0	0	0	0.027866	1	9253	9253		128.86	31.388	1	119070			49927	37953	34726	34779	55325	55325					0.07092582399991443
LVLFDVTGQV	10	Unmodified	_LVLFDVTGQV_					0	0	0		ENSG00000013364|ENST00000357402|MVP;ENST00000565830.5_1_16:29841852-29843003:+|nuORF	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.811279296875	2	545.810782	1089.60701	-0.96752	-0.00052808	0.91985	0.00050207	-0.047666	-2.6017E-05	545.8112395180657	91.515	1.3143	91.503	91.156	92.471	-0.012383					82	31	5	0	0	0	0.65054	1	11585	11585		71.296	2.5089	1	4054900			49928	913	34727	34780	55326	55326					0.06579182791574567
LVLFRLLEP	9	Unmodified	_LVLFRLLEP_					0	0	0		nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2949829101562	2	550.347335	1098.68012	0.12096	6.6568E-05	-0.51554	-0.00028373	-0.39459	-0.00021716	550.3469904769479	96.087	0.71042	96.094	95.862	96.572	0.0065079					27	16	2	0	0	0	0.024506	1	12198	12198		23.042	1.3402	1	84661			49929	18242	34728	34781	55327	55327					0.1347235630482828
LVLFVLFLPI	10	Unmodified	_LVLFVLFLPI_					0	0	0			REV__OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant;REV__ENSG00000172487|ENST00000533152|OR8J1;REV__nc|ENSG00000254658|Q8NGG1|OR8J2	REV__ENSG00000172487|ENST00000533152|OR8J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	587.2955322265625	2	587.385929	1172.7573	0.25425	0.00014934	2.1956	0.0012897	2.4499	0.001439	587.3866236423593	74.063	0.17174	74.072	74.009	74.18	0.0096512					5	3	2	0	0	0	0.03519	1	8987	8987		19.36	3.7182	1	66838	+		49930	26677;26196;37172	34729	34782	55328	55328					0.1778357452117234
LVLGAPPAS	9	Unmodified	_LVLGAPPAS_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.74609375	2	412.747453	823.480354	0.79299	0.0003273	-3.8237	-0.0015782	-3.0307	-0.0012509	412.7457786960996	84.338	1.9792	84.338	83.605	85.584	0					109	46	5	0	0	0	0.90698	1	10556	10556		31.955	6.5047	1	6308600			49931	11892	34730	34783	55329	55329					0.06155301357091503
LVLGAPPAS	9	Unmodified	_LVLGAPPAS_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.74603271484375	2	412.747453	823.480354	-0.12119	-5.0022E-05	-2.8672	-0.0011834	-2.9884	-0.0012335	412.74615085792476	84.367	2.1052	84.393	83.555	85.66	0.026558					110	49	4	0	0	0	0.98128	1	10501	10501		24.203	0	1	6096900			49932	11892	34730	34783	55330	55330					0.06155301357091503
LVLGAPPAS	9	Unmodified	_LVLGAPPAS_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.74652099609375	2	412.747453	823.480354	0.7645	0.00031555	-3.8759	-0.0015998	-3.1114	-0.0012842	412.7457683107616	84.583	1.9803	84.424	83.671	85.651	-0.15869					114	46	4	0	0	0	0.97516	1	10234	10234		25.45	1.2474	1	6553300			49933	11892	34730	34783	55331	55331					0.06155301357091503
LVLGHGDPT	9	Unmodified	_LVLGHGDPT_					0	0	0		ENST00000590278.1_1_19:33695337-33695988:+|nuORF	ENST00000590278.1_1_19:33695337-33695988:+|nuORF	ENST00000590278.1_1_19:33695337-33695988:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.7447509765625	2	454.745442	907.476331	0.21748	9.8897E-05	-1.5936	-0.00072467	-1.3761	-0.00062577	454.7446096091311	101.75	1.4478	101.58	101.05	102.5	-0.17178					89	33	4	0	0	0	0.97516	1	12635	12635		25.45	4.5032	1	2298900			49934	17327	34731	34784	55332	55332					0.018892118633857535
LVLHDTKVT	9	Unmodified	_LVLHDTKVT_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B;REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.3032836914062	2	513.303124	1024.5917	-0.99763	-0.00051209	0.65732	0.0003374	-0.34031	-0.00017468	513.3034380943269	37.291	0.8177	37.072	36.726	37.544	-0.2195					66	20	5	0	0	0	0.15366	1	2987	2987		98.629	2.8142	1	2670700	+		49935	22530;30410	34732	34785	55333	55333					0.0803831599437217
LVLHELMW	8	Unmodified	_LVLHELMW_					0	0	0			REV__ENST00000560780.1_2_15:44964301-44966556:-|nuORF	REV__ENST00000560780.1_2_15:44964301-44966556:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7842407226562	2	520.783513	1039.55247	-0.25443	-0.0001325	1.3691	0.000713	1.1147	0.0005805	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	1.0472	1	13337	13337		29.842	5.6388	1	3782600	+		49936	35156	34733	34786	55334	55334					0.03427892439140123
LVLHILSLL	9	Unmodified	_LVLHILSLL_					0	0	0			REV__ENSG00000243896|ENST00000641841|OR2A7	REV__ENSG00000243896|ENST00000641841|OR2A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.84417724609375	2	510.844428	1019.6743	-0.22774	-0.00011634	-0.54879	-0.00028035	-0.77653	-0.00039669	510.8441376321849	76.118	1.8347	75.859	75.158	76.993	-0.25865					162	45	5	0	0	0	0.22754	3	9047	9047;9059;9083		85.359	16.573	1	26498000	+		49937	27354	34734	34787	55335;55336;55337	55335					0.1652525779318239
LVLHMSTLL	9	Unmodified	_LVLHMSTLL_					0	0	0		ENSG00000186364|ENST00000334513|NUDT17	ENSG00000186364|ENST00000334513|NUDT17	ENSG00000186364|ENST00000334513|NUDT17	MSMS	OPSCC_40_ClassI_Rep-2	5	513.8042602539062	2	513.804445	1025.59434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.84	1	105.71	105.21	106.21	-0.1328								0	0	0	0.59296	1	13180	13180		40.573	0	1				49938	9543	34735	34788	55338	55338					0.08256448127690419
LVLHTAILD	9	Unmodified	_LVLHTAILD_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.8296813964844	2	497.800217	993.585882	-0.80521	-0.00040083	3.4032	0.0016941	2.598	0.0012933	497.8016255462641	51.839	0.42982	51.929	51.647	52.077	0.089535					15	11	2	0	0	0	0.024386	1	5460	5460		33.516	0	1	222930	+		49939	25181	34736	34789	55339	55339					0.0888321748270755
LVLHVILAQD	10	Unmodified	_LVLHVILAQD_					0	0	0			REV__ENST00000491681.1_1_3:128514210-128516981:+|nuORF	REV__ENST00000491681.1_1_3:128514210-128516981:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3228149414062	2	560.839874	1119.66519	0.0036527	2.0486E-06	-1.0696	-0.0005999	-1.066	-0.00059785	561.3402777609673	67.58	0.50296	67.58	67.367	67.87	0					27	12	4	0	0	0	0.03519	1	8074	8074		23.042	12.177	1	468620	+		49940	33729	34737	34790	55340	55340					0.11014864436856442
LVLIILSTY	9	Unmodified	_LVLIILSTY_					0	0	0			REV__sp|P06927|VE5_HPV16ProbableproteinE5OS=Humanpapillomavirustype16OX=333760GN=E5PE=1SV=2	REV__sp|P06927|VE5_HPV16ProbableproteinE5OS=Humanpapillomavirustype16OX=333760GN=E5PE=1SV=2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7996215820312	2	517.828443	1033.64233	-0.39477	-0.00020442	2.6305	0.0013621	2.2357	0.0011577	517.8303990138407	104.48	0.39883	104.36	104.2	104.6	-0.12928					13	9	2	0	0	0	0.024541	1	12999	12999		20.482	1.1219	1	44620	+		49941	37556	34738	34791	55341	55341					0.1268584531937904
LVLIIVTIA	9	Unmodified	_LVLIIVTIA_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3;REV__nc|ENSG00000070961|P20020-5|ATP2B1	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.8338623046875	2	477.833529	953.652505	-0.88629	-0.0004235	1.2692	0.00060646	0.3829	0.00018296	477.83392867359913	105.5	0.89895	105.37	105.26	106.16	-0.13099					63	33	3	0	0	0	0.97516	1	13168	13168		25.45	0	1	1015200	+		49942	20367;20442	34739	34792	55342	55342					0.1738245304461543
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		BRWD3-FAM155A|1|fusion	BRWD3-FAM155A|1|fusion	BRWD3-FAM155A|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.79046630859375	2	510.844428	1019.6743	-0.55895	-0.00028553	-1.2431	-0.00063504	-1.8021	-0.00092058	510.84318287722755	82.32	0.80807	82.345	82.065	82.873	0.025711					24	18	2	0	0	0	0.024506	1	10240	10240		16.473	0	1	65113			49943	192	34740	34793	55343	55343					0.16525257793171022
LVLIRVKNAG	10	Unmodified	_LVLIRVKNAG_					0	0	0			REV__ENST00000476612.1_1_1:154523812-154524267:-|nuORF	REV__ENST00000476612.1_1_1:154523812-154524267:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.7984619140625	2	541.855858	1081.69716	-0.44151	-0.00023924	0.29166	0.00015804	-0.14985	-8.1199E-05	541.8558877424535	32.654	1.1773	32.417	31.611	32.789	-0.23666					60	27	3	0	0	0	0.03519	1	2172	2172		16.473	0	1	806970	+		49944	33311	34741	34794	55344	55344					0.15958276910646418
LVLIVCDPGQ	10	Unmodified	_LVLIVCDPGQ_					0	0	0			REV__ENST00000465508.5_1_1:6695737-6697639:-|nuORF	REV__ENST00000465508.5_1_1:6695737-6697639:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7903442382812	2	528.791535	1055.56852	-0.87845	-0.00046452	-0.56877	-0.00030076	-1.4472	-0.00076528	528.7907742527103	104.54	0.93262	104.41	104.11	105.05	-0.12927					65	29	3	0	0	0	1.0992	1	12996	12996		32.812	0.85756	1	925510	+		49945	33006	34742	34795	55345	55345					0.04295553885390291
LVLKDFGPVET	11	Unmodified	_LVLKDFGPVET_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.8768005371094	3	406.564056	1216.67034	0.27552	0.00011202	-1.6121	-0.00065543	-1.3366	-0.00054341	406.56333273842824	50.118	0.30301	49.937	49.752	50.055	-0.18071					14	7	3	0	0	0	0.024726	1	5046	5046		32.034	5.9707	1	84573	+		49946	22288	34743	34796	55346	55346					0.07067123508795703
LVLLELGE	8	Unmodified	_LVLLELGE_					0	0	0		CTSE|p.G19E|1|0.3|ENSG00000196188|chr1:206023736-206023736|C/T|missense_variant;nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	CTSE|p.G19E|1|0.3|ENSG00000196188|chr1:206023736-206023736|C/T|missense_variant	CTSE|p.G19E|1|0.3|ENSG00000196188|chr1:206023736-206023736|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2669677734375	2	443.268219	884.521884	-1.2272	-0.00054396	-1.8401	-0.00081565	-3.0673	-0.0013596	443.2673390486623	29.675	1.1838	29.675	29.408	30.592	0					79	28	4	0	0	0	1.0572	1	1843	1843		28.254	0	1	3341100			49947	605	34744	34797	55347	55347					0.07500437325779785
LVLLFCELI	9	Unmodified	_LVLLFCELI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	531.817021	1061.61949	0.30294	0.00016111	-0.91839	-0.00048842	-0.61545	-0.00032731	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	1.0051	1	10818	10818		19.36	0	1	3405600			49948	9358	34745	34798	55348	55348					0.09114502930242452
LVLLHFDR	8	Unmodified	_LVLLHFDR_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.82440185546875	2	506.800552	1011.58655	-0.67854	-0.00034388	-2.4748	-0.0012543	-3.1534	-0.0015981	506.7988287395898	43.132	0.25856	43.132	43.002	43.261	0					9	6	2	0	0	0	0.027866	1	4001	4001		9.4706	0	1	48739	+		49949	24611;36769	34746	34799	55349	55349					0.08122056922411502
LVLLLVHIK	9	Unmodified	_LVLLLVHIK_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2901611328125	2	524.36807	1046.72159	-0.013414	-7.0336E-06	4.4467	0.0023317	4.4332	0.0023246	524.3694949883233	71.921	0.11672	71.646	71.549	71.666	-0.27509					4	2	2	0	0	0	0.024517	1	8402	8402		19.36	0	1	33912	+		49950	20892	34747	34800	55350	55350					0.20009537064152028
LVLLMEIVF	9	Unmodified	_LVLLMEIVF_					0	0	0		ENST00000366644.3_1_1:231475179-231480431:+|nuORF	ENST00000366644.3_1_1:231475179-231480431:+|nuORF	ENST00000366644.3_1_1:231475179-231480431:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2796020507812	2	538.824846	1075.63514	-0.85566	-0.00046105	2.9405	0.0015844	2.0848	0.0011233	538.8261802084008	45.732	0.41319	45.776	45.444	45.857	0.04388					16	11	2	0	0	0	0.024541	1	4382	4382		13.775	0	1	169980			49951	12821	34748	34801	55351	55351					0.10034789447308867
LVLLNVGT	8	Unmodified	_LVLLNVGT_					0	0	0			REV__ENSG00000165349|ENST00000374299|SLC7A3	REV__ENSG00000165349|ENST00000374299|SLC7A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.76214599609375	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	1.0338	1	11135	11135		31.955	3.7006	1	53595000	+		49952	25876	34749	34802	55352	55352					0.09099874391188223
LVLLQPHIS	9	Unmodified	_LVLLQPHIS_					0	0	0			REV__ENST00000419457.1_1_13:29297015-29297114:-|nuORF	REV__ENST00000419457.1_1_13:29297015-29297114:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.26422119140625	2	510.316035	1018.61752	0.39722	0.00020271	-0.67331	-0.0003436	-0.27609	-0.00014089	510.31542948598786	79.173	0.33273	78.918	78.729	79.062	-0.25471					14	7	2	0	0	0	0.024541	1	9466	9466		19.36	13.047	1	199620	+		49953	32140	34750	34803	55353	55353					0.10895210236662933
LVLLRALLKQP	11	Unmodified	_LVLLRALLKQP_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	632.4288940429688	2	632.42919	1262.84383	-1.7423	-0.0011019	2.6183	0.0016559	0.87602	0.00055402	632.4306916995641	107.48	0.10262	107.34	107.29	107.39	-0.1346					8	4	3	0	0	0	1.0898	1	13342	13342		14.137	4.4315	1	3801300	+		49954	27726	34751	34804	55354	55354					0.2229195407574025
LVLLRGAATE	10	Unmodified	_LVLLRGAATE_					0	0	0		nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.8179321289062	2	521.816399	1041.61824	-0.41245	-0.00021522	4.4802	0.0023378	4.0677	0.0021226	521.8185586576719	70.408	1.0348	70.136	69.364	70.399	-0.27185					68	25	4	0	0	0	1.0271	1	8208	8208		42.396	1.8235	1	2639200			49955	16829;18711	34752	34805	55355	55355					0.0991000488568261
LVLLSTHKT	9	Unmodified	_LVLLSTHKT_					0	0	0		ENST00000471757.5_1_2:96691131-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000486463.5_1_2:96687909-96693504:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000482704.1_1_2:96692637-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000471757.5_1_2:96691131-96693504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.82440185546875	2	506.313492	1010.61243	-0.67784	-0.0003432	1.4502	0.00073425	0.77234	0.00039105	506.3138185713892	43.132	0.36543	43.132	42.967	43.332	0					18	9	3	0	0	0	0.024466	1	4001	4001		12.207	0	1	330980			49956	9534	34753	34806	55356	55356					0.1075490637402936
LVLLWMLLV	9	Unmodified	_LVLLWMLLV_					0	0	0			REV__ENSG00000172889|ENST00000308874|EGFL7	REV__ENSG00000172889|ENST00000308874|EGFL7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8118286132812	2	550.351031	1098.68751	-0.51109	-0.00028128	2.3463	0.0012913	1.8353	0.00101	550.3519208605172	64.712	0.35223	64.477	64.177	64.529	-0.2345					10	8	2	0	0	0	0.024475	1	7330	7330		21.702	6.0605	1	150180	+		49957	26718	34754	34807	55357	55357					0.14211372580894022
LVLMEAILEG	10	Unmodified	_LVLMEAILEG_					0	0	0		ENST00000444886.1_1_9:128358610-128358904:+|nuORF	ENST00000444886.1_1_9:128358610-128358904:+|nuORF	ENST00000444886.1_1_9:128358610-128358904:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8314819335938	2	544.307018	1086.59948	-0.022096	-1.2027E-05	-1.7942	-0.00097658	-1.8163	-0.0009886	544.3058357088281	71.524	0.57244	71.318	70.964	71.536	-0.20613					38	13	4	0	0	0	0.03519	1	8326	8326		34.173	0	1	1109000			49958	14429	34755	34808	55358	55358					0.059647071996323575
LVLPSGPPSL	10	Unmodified	_LVLPSGPPSL_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-5|WWC2	REV__nc|ENSG00000151718|Q6AWC2-5|WWC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.3186340332031	2	490.294768	978.574983	-0.44701	-0.00021917	0.79162	0.00038813	0.34461	0.00016896	490.2950474075461	66.913	0.30017	66.937	66.812	67.112	0.023903					9	6	2	0	0	0	0.03519	1	7914	7914		26.693	0	1	203430	+		49959	24790	34756	34809	55359	55359					0.084838151084341
LVLQDRSH	8	Unmodified	_LVLQDRSH_					0	0	0		ENST00000496425.1_1_20:62373927-62374363:+|nuORF;ENST00000473157.1_1_20:62373310-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	ENST00000496425.1_1_20:62373927-62374363:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.79058837890625	2	484.269616	966.524678	1.9373	0.00093818	-3.7839	-0.0018324	-1.8466	-0.00089424	484.268897008805	36.53	0.44352	36.332	36.093	36.536	-0.19829					13	10	2	0	0	0	0.027866	1	2865	2865		68.485	18.46	1	67806			49960	15003	34757	34810	55360	55360					0.04007705503283887
LVLQKWGK	8	Unmodified	_LVLQKWGK_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7710266113281	2	486.30547	970.596387	0.14209	6.9101E-05	-0.70848	-0.00034454	-0.56639	-0.00027544	486.3050820100415	76.426	0.63911	76.258	76.012	76.652	-0.16853					24	14	2	0	0	0	0.027866	1	9042	9042		20.482	7.5226	1	364230	+		49961	32309	34758	34811	55361	55361					0.10991244927799926
LVLQVVDKPSP	11	Unmodified	_LVLQVVDKPSP_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8568725585938	2	597.858264	1193.70197	-0.43133	-0.00025788	-2.5771	-0.0015407	-3.0084	-0.0017986	597.8566004314059	95.468	0.86575	95.331	95.112	95.978	-0.13689					46	19	3	0	0	0	1.0592	1	11795	11795		22.58	0	1	343790			49962	4810	34759	34812	55362	55362					0.11287116262769814
LVLREATASL	10	Unmodified	_LVLREATASL_					0	0	0		ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7974853515625	2	536.821681	1071.62881	-0.49504	-0.00026575	0.84367	0.0004529	0.34862	0.00018715	536.8218755506044	66.418	0.38694	66.17	65.981	66.368	-0.24839					20	9	3	0	0	0	0.03519	1	7611	7611		29.15	0	1	269700			49963	10439	34760	34813	55363	55363					0.09585987540117458
LVLRGNTKI	9	Unmodified	_LVLRGNTKI_					0	0	0		FRMD7|p.Y498Lfs*15|1|0.21|ENSG00000165694|chrX:132078524-132078525|-/A|frameshift_variant;nc|ENSG00000165694|Q6ZUT3-2|FRMD7;ENSG00000165694|ENST00000298542|FRMD7	FRMD7|p.Y498Lfs*15|1|0.21|ENSG00000165694|chrX:132078524-132078525|-/A|frameshift_variant	FRMD7|p.Y498Lfs*15|1|0.21|ENSG00000165694|chrX:132078524-132078525|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3264465332031	2	507.326934	1012.63931	0.43613	0.00022126	-0.44706	-0.0002268	-0.010924	-5.5421E-06	507.3265535981098	20.032	0.58437	19.808	19.533	20.117	-0.22344					25	11	3	0	0	0	0.31037	1	480	480		74.255	7.8258	1	513320			49964	7454	34761	34814	55364	55364					0.1335001498522388
LVLRVHVN	8	Unmodified	_LVLRVHVN_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.259765625	2	475.300719	948.586885	0.2852	0.00013556	-0.32605	-0.00015497	-0.040849	-1.9415E-05	475.30042077560904	41.285	0.8055	41.308	40.864	41.67	0.023006					49	22	3	0	0	0	0.027866	1	3584	3584		14.664	0	1	615390	+		49965	20251	34762	34815	55365	55365					0.11053476642280202
LVLRVHVN	8	Unmodified	_LVLRVHVN_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.300719	948.586885	1.0708	0.00050893	-1.0344	-0.00049167	0.036328	1.7267E-05	475.30009322147254	41.102	0.66747	41.102	40.728	41.396	0	-0.088909	-0.00033759	NaN	14.664	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625020	+		49966	20251	34762	34815							0.11053476642280202
LVLRVHVN	8	Unmodified	_LVLRVHVN_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.300719	948.586885	0.68997	0.00032794	-0.65884	-0.00031315	0.031126	1.4794E-05	475.3002692859201	41.285	0.85208	41.162	40.797	41.65	-0.12317	-0.028782	1.9441E-05	NaN	14.664	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563700	+		49967	20251	34762	34815							0.11053476642280202
LVLSQLPNFW	10	Unmodified	_LVLSQLPNFW_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.836669921875	2	608.839874	1215.66519	-1.0376	-0.00063172	-3.8123	-0.0023211	-4.8499	-0.0029528	608.8374403487405	109.72	0.52835	109.72	109.52	110.05	0.0059204					63	25	4	0	0	0	1.1329	1	13856	13856		27.882	7.0451	1	5115400			49968	3231	34763	34816	55366	55366					0.06598864436841723
LVLSSKGGPPN	11	Unmodified	_LVLSSKGGPPN_					0	0	0			REV__nc|ENSG00000189159|Q9UK76-3|JPT1	REV__nc|ENSG00000189159|Q9UK76-3|JPT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.8056030273438	2	534.806031	1067.59751	-1.385	-0.00074073	1.1895	0.00063615	-0.19555	-0.00010458	534.8066463394102	80.531	0.90666	80.379	80.008	80.915	-0.15169					39	21	2	0	0	0	0.90725	1	9984	9984		51.193	1.7511	1	1834600	+		49969	28104	34764	34817	55367	55367					0.06641414506066212
LVLTKVSTGV	10	Unmodified	_LVLTKVSTGV_					0	0	0			REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.82342529296875	2	508.82115	1015.62775	0.74628	0.00037972	3.3146	0.0016866	4.0609	0.0020663	508.82264791099703	99.469	0.52983	99.344	99.111	99.641	-0.12458					29	14	3	0	0	0	1.0508	1	12352	12352		39.253	0.44669	1	128640	+		49970	22415	34765	34818	55368	55368					0.120557731712438
LVLTRLLN	8	Unmodified	_LVLTRLLN_					0	0	0		ENST00000392882.6_1_14:100835530-100841695:-|nuORF	ENST00000392882.6_1_14:100835530-100841695:-|nuORF	ENST00000392882.6_1_14:100835530-100841695:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2600402832031	2	471.310752	940.606951	0.78834	0.00037155	-0.88193	-0.00041566	-0.093597	-4.4113E-05	471.3102088762518	68.456	0.74625	68.475	68.158	68.904	0.018913					51	19	4	0	0	0	0.027866	1	8107	8107		24.203	0	1	1183900			49971	13431	34766	34819	55369	55369					0.13427227582235446
LVLVIELN	8	Unmodified	_LVLVIELN_					0	0	0			REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF	REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2528991699219	2	456.791861	911.569169	0.5852	0.00026732	-0.09077	-4.1463E-05	0.49443	0.00022585	456.79161882388655	67.957	0.53308	67.976	67.781	68.314	0.018913					28	13	3	0	0	0	0.027866	1	8019	8019		35.201	10.998	1	251120	+		49972	33348	34767	34820	55370	55370					0.10984716596749422
LVLVQLRKL	9	Unmodified	_LVLVQLRKL_					0	0	0		ENSG00000139537|ENST00000320516|CCDC65;nc|ENSG00000139537|Q8IXS2-2|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8316040039062	2	541.376426	1080.7383	-0.95861	-0.00051897	-1.5838	-0.00085744	-2.5424	-0.0013764	541.374896874711	75.509	0.43491	75.265	75.077	75.512	-0.24455					13	11	2	0	0	0	0.024325	1	9257	9257		50.025	4.0726	1	102480			49973	5342	34768	34821	55371	55371					0.20116037950151622
LVLVQVHD	8	Unmodified	_LVLVQVHD_					0	0	0			REV__ENST00000504447.1_1_5:147812919-147813335:+|nuORF	REV__ENST00000504447.1_1_5:147812919-147813335:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.7720031738281	2	461.77146	921.528367	1.1706	0.00054053	1.9024	0.00087849	3.073	0.001419	461.77207881441643	98.214	0.37351	98.09	97.911	98.285	-0.12413					10	8	2	0	0	0	1.0574	1	12175	12175		23.037	1.0768	1	139680	+		49974	24441	34769	34822	55372	55372					0.0644637527714167
LVLVVGLGLL	10	Unmodified	_LVLVVGLGLL_					0	0	0			REV__nc|ENSG00000133027|Q9UBM1|PEMT	REV__nc|ENSG00000133027|Q9UBM1|PEMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2595520019531	2	498.346803	994.679054	0.42214	0.00021037	-1.1365	-0.00056639	-0.71441	-0.00035602	498.34617345328587	75.597	0.53764	75.607	75.399	75.937	0.010376					25	14	3	0	0	0	0.03519	1	9194	9194		54.765	0	1	424120	+		49975	23339	34770	34823	55373	55373					0.18150141935961983
LVLWEFRLPAR	11	Unmodified	_LVLWEFRLPAR_					0	0	0			REV__ENST00000524376.1_1_11:121962418-121971135:-|nuORF	REV__ENST00000524376.1_1_11:121962418-121971135:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.6092834472656	3	467.278473	1398.81359	-0.16594	-7.7542E-05	-3.8272	-0.0017884	-3.9932	-0.0018659	467.2766860850209	100.05	0.55965	99.878	99.361	99.921	-0.17088					21	15	2	0	0	0	0.024759	1	12395	12395		17.833	0	1	189870	+		49976	34383	34771	34824	55374	55374					0.13013595410552625
LVLWRGTN	8	Unmodified	_LVLWRGTN_					0	0	0			REV__ENST00000460939.5_1_11:62371528-62373633:-|nuORF	REV__ENST00000460939.5_1_11:62371528-62373633:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7756652832031	2	479.777077	957.5396	-0.33321	-0.00015986	0.01258	6.0357E-06	-0.32063	-0.00015383	479.77668346887833	79.755	0.54337	79.777	79.478	80.021	0.021439					20	12	2	0	0	0	0.6248	1	9818	9818		73.975	8.1716	1	483130	+		49977	24682	34772	34825	55375	55375					0.059131973712851504
LVLYCVGQEI	10	Unmodified	_LVLYCVGQEI_					0	0	0			REV__ENSG00000265808|ENST00000578049|SEC22B	REV__ENSG00000265808|ENST00000578049|SEC22B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8031616210938	2	568.804642	1135.59473	-0.7512	-0.00042728	-1.8472	-0.0010507	-2.5984	-0.001478	568.8032728203835	97.335	1.6791	97.335	96.925	98.604	0					87	38	4	0	0	0	1.0142	1	12485	12485		44.117	3.3386	1	1393200	+		49978	29136	34773	34826	55376	55376					0.03235823056888876
LVLYFPLIL	9	Unmodified	_LVLYFPLIL_					0	0	0		ENST00000393585.6_1_4:185550289-185550421:-|nuORF	ENST00000393585.6_1_4:185550289-185550421:-|nuORF	ENST00000393585.6_1_4:185550289-185550421:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3029174804688	2	545.849179	1089.6838	-0.23391	-0.00012768	-3.1434	-0.0017158	-3.3773	-0.0018435	545.847209318891	63.689	0.49757	63.497	63.342	63.84	-0.19243					19	12	2	0	0	0	0.024541	1	7194	7194		14.664	0	1	148790			49979	13453	34774	34827	55377	55377					0.14255026078694755
LVLYILNVT	9	Unmodified	_LVLYILNVT_					0	0	0		ENST00000413432.2_1_2:242382249-242382291:+|nuORF	ENST00000413432.2_1_2:242382249-242382291:+|nuORF	ENST00000413432.2_1_2:242382249-242382291:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2980346679688	2	524.326068	1046.63758	-0.026661	-1.3979E-05	-0.10245	-5.3717E-05	-0.12911	-6.7696E-05	524.3260260757821	80.776	0.61256	80.63	80.284	80.897	-0.146					18	14	2	0	0	0	0.024517	1	9718	9718		26.796	9.4311	1	65439			49980	13842	34775	34828	55378	55378					0.116129611766155
LVLYILNVT	9	Unmodified	_LVLYILNVT_					0	0	0		ENST00000413432.2_1_2:242382249-242382291:+|nuORF	ENST00000413432.2_1_2:242382249-242382291:+|nuORF	ENST00000413432.2_1_2:242382249-242382291:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.326068	1046.63758	-0.15147	-7.9421E-05	0.10183	5.3391E-05	-0.049645	-2.603E-05	524.3261388735867	80.79	0.43902	80.552	80.328	80.767	-0.23784	-0.047462	0.00036841	NaN	26.796	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100360			49981	13842	34775	34828							0.116129611766155
LVLYILNVT	9	Unmodified	_LVLYILNVT_					0	0	0		ENST00000413432.2_1_2:242382249-242382291:+|nuORF	ENST00000413432.2_1_2:242382249-242382291:+|nuORF	ENST00000413432.2_1_2:242382249-242382291:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.326068	1046.63758	0.33133	0.00017372	-1.1751	-0.00061614	-0.84377	-0.00044241	524.325380397303	80.824	0.52654	80.617	80.343	80.869	-0.20632	0.017558	-0.00097064	NaN	26.796	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75185			49982	13842	34775	34828							0.116129611766155
LVLYIYGAPQ	10	Unmodified	_LVLYIYGAPQ_					0	0	0		ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2669067382812	2	568.82115	1135.62775	0.40187	0.00022859	3.7019	0.0021057	4.1037	0.0023343	568.8231015085595	22.403	0.31918	22.214	22.055	22.374	-0.18894					11	6	2	0	0	0	0.03519	1	776	776		15.642	0	1	43582			49983	2398	34776	34829	55379	55379					0.06535773171231085
LVMASPIAAR	10	Unmodified	_LVMASPIAAR_					0	0	0		PKP3|p.V730M|1|0.22|ENSG00000184363|chr11:404053-404053|G/A|missense_variant	PKP3|p.V730M|1|0.22|ENSG00000184363|chr11:404053-404053|G/A|missense_variant	PKP3|p.V730M|1|0.22|ENSG00000184363|chr11:404053-404053|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.7994995117188	2	514.799694	1027.58484	-0.054432	-2.8021E-05	-0.56239	-0.00028952	-0.61682	-0.00031754	514.799356717267	45.461	1.1885	45.208	44.826	46.015	-0.25252					91	32	5	0	0	0	0.48123	1	4287	4287		90.37	1.7269	1	17317000			49984	18970	34777	34830	55380	55380					0.07214679842127225
LVMDWPGLL	9	Unmodified	_LVMDWPGLL_					0	0	0			REV__nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	REV__nc|ENSG00000168079|Q6ZMJ2-3|SCARA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8341674804688	2	522.283346	1042.55214	0.32142	0.00016787	0.016041	8.3778E-06	0.33747	0.00017625	522.2834996541314	69.528	0.53429	69.235	68.933	69.467	-0.29291					30	13	3	0	0	0	0.022799	1	8337	8337		96.048	5.2711	1	853590	+		49985	36903	34778	34831	55381	55381					0.03256472719294834
LVMFKFID	8	Unmodified	_LVMFKFID_					0	0	0			REV__TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	REV__TRPC3|p.K759*|1|0.13|ENSG00000138741|chr4:121903040-121903041|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2657165527344	2	506.780439	1011.54633	-0.31041	-0.00015731	4.3161	0.0021873	4.0057	0.00203	507.2847082722699	62.53	0.3273	62.593	62.483	62.81	0.062767					10	7	2	0	0	0	0.027866	1	7225	7225		12.959	0	1	102000	+		49986	23892	34779	34832	55382	55382					0.04101374207630215
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2678833007812	2	524.268227	1046.5219	-1.2799	-0.00067101	0.95348	0.00049988	-0.32642	-0.00017113	524.2686289720119	43.265	1.8458	43.265	42.605	44.451	0					121	51	4	0	0	0	0.11848	4	4041	4028;4041;4052;4065		106.42	14.225	1	5911000	+		49987	23894	34780	34833	55383;55384;55385;55386	55384					0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2676391601562	2	524.268227	1046.5219	-1.0188	-0.00053413	1.136	0.00059556	0.11718	6.1436E-05	524.2686423752582	45.455	1.6973	45.455	44.12	45.818	0					110	49	3	0	0	0	0.10076	2	4409	4409;4426		110.34	18.147	1	2869200	+		49988	23894	34780	34833	55387;55388	55387					0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2681274414062	2	524.268227	1046.5219	-0.74756	-0.00039192	0.54525	0.00028586	-0.20231	-0.00010607	524.2683926023352	43.421	1.5298	43.282	42.702	44.232	-0.13929					124	42	5	0	0	0	0.17455	4	4039	4031;4039;4051;4065		94.006	11.701	1	5948400	+		49989	23894	34780	34833	55389;55390;55391;55392	55390					0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2683715820312	2	524.268227	1046.5219	-0.84021	-0.0004405	0.99249	0.00052033	0.15228	7.9836E-05	524.2685772348933	45.561	1.6321	45.409	44.124	45.756	-0.15156					104	47	3	0	0	0	0.17455	1	4426	4426		94.006	14.067	1	2490700	+		49990	23894	34780	34833	55393	55393					0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2680053710938	2	524.268227	1046.5219	0.30757	0.00016125	-0.6371	-0.00033401	-0.32953	-0.00017276	524.2677858721994	43.313	1.6202	43.344	42.646	44.266	0.030823					134	44	5	0	0	0	0.11848	2	3973	3973;4008		106.42	26.476	1	6592900	+		49991	23894	34780	34833	55394;55395	55394					0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2676391601562	2	524.268227	1046.5219	-0.17911	-9.3903E-05	0.34613	0.00018147	0.16702	8.7562E-05	524.2682258216427	45.414	1.5741	45.458	44.248	45.822	0.043877					109	45	4	0	0	0	0.11848	1	4362	4362		106.42	26.476	1	2702900	+		49992	23894	34780	34833	55396	55396					0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	524.268227	1046.5219	-1.0188	-0.00053413	1.136	0.00059556	0.11718	6.1436E-05	524.2686423752582	45.455	1.6973	45.455	44.12	45.818	0	-0.022476	0.00019195	NaN	110.34	110	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2869200	+		49993	23894	34780	34833							0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	524.268227	1046.5219	-0.84021	-0.0004405	0.99249	0.00052033	0.15228	7.9836E-05	524.2685772348933	45.561	1.6321	45.409	44.124	45.756	-0.15156	-0.06865	4.1494E-05	NaN	110.34	104	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2490700	+		49994	23894	34780	34833							0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	524.268227	1046.5219	-0.17911	-9.3903E-05	0.34613	0.00018147	0.16702	8.7562E-05	524.2682258216427	45.414	1.5741	45.458	44.248	45.822	0.043877	-0.019592	-0.00063624	NaN	110.34	109	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2702900	+		49995	23894	34780	34833							0.0005011405410186853
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.268227	1046.5219	-0.72699	-0.00038114	7.446	0.0039037	6.7191	0.0035226	524.2710553218375	45.791	0.2141	45.588	45.492	45.706	-0.20226	0.11072	0.0068083	NaN	110.34	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99528	+		49996	23894	34780	34833							0.0005011405410186853
LVMIIEPQ	8	Unmodified	_LVMIIEPQ_					0	0	0			REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF	REV__ENST00000560401.5_1_15:84748925-84771641:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7718505859375	2	471.770071	941.52559	0.75311	0.00035529	2.8276	0.001334	3.5807	0.0016893	471.7712681907095	39.932	1.5621	39.932	39.627	41.189	0					93	43	3	0	0	0	0.65272	1	3459	3459		71.378	2.5911	1	13354000	+		49997	35089	34781	34834	55397	55397					0.05248783827960324
LVMKMGAEPI	10	Unmodified	_LVMKMGAEPI_					0	0	0			REV__ENST00000520859.5_1_8:91017819-91018288:+|nuORF	REV__ENST00000520859.5_1_8:91017819-91018288:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.24755859375	2	544.795763	1087.57697	-0.59149	-0.00032224	1.0659	0.00058069	0.4744	0.00025845	544.7962709703238	52.918	0.36341	52.728	52.43	52.793	-0.18982					11	8	2	0	0	0	0.03519	1	5479	5479		40.778	0	1	92891	+		49998	34305	34782	34835	55398	55398					0.03668784530373159
LVMLVYPNTT	10	Unmodified	_LVMLVYPNTT_					0	0	0			REV__ENSG00000043462|ENST00000046794|LCP2	REV__ENSG00000043462|ENST00000046794|LCP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.842529296875	2	575.812467	1149.61038	-0.83007	-0.00047796	1.7065	0.00098262	0.87643	0.00050466	575.8128461826433	90	0.41307	89.838	89.602	90.015	-0.1626					15	9	2	0	0	0	0.03519	1	10978	10978		66.429	20.521	1	72113	+		49999	20107	34783	34836	55399	55399					0.04156109573887079
LVMPQARV	8	Unmodified	_LVMPQARV_					0	0	0			REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.3127746582031	2	457.26803	912.521507	1.9983	0.00091375	-1.9192	-0.00087758	0.079107	3.6173E-05	457.2670083575255	19.219	0.69251	18.986	18.682	19.374	-0.23345					23	13	2	0	0	0	0.027866	1	349	349		62.978	10.679	1	63522	+		50000	34273	34784	34837	55400	55400					0.06174739124912776
LVMPQARV	8	Unmodified	_LVMPQARV_					0	0	0			REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.26803	912.521507	0.07638	3.4926E-05	-6.8473	-0.003131	-6.7709	-0.0030961	457.2641965094997	19.245	0.44422	19.126	18.953	19.397	-0.11872	0.083757	-0.0049406	NaN	62.978	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24275	+		50001	34273	34784	34837							0.06174739124912776
LVMPQARV	8	Unmodified	_LVMPQARV_					0	0	0			REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.26803	912.521507	0.54262	0.00024812	-0.25644	-0.00011726	0.28617	0.00013086	457.2677926432983	19.17	0.64294	19.009	18.787	19.43	-0.16079	-0.033309	0.001087	NaN	62.978	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64898	+		50002	34273	34784	34837							0.06174739124912776
LVMPQARV	8	Unmodified	_LVMPQARV_					0	0	0			REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	REV__ENST00000519868.1_1_5:169507757-169507874:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.26803	912.521507	0.58366	0.00026689	-0.94248	-0.00043097	-0.35883	-0.00016408	457.26776306189583	19.249	0.64421	19.049	18.761	19.405	-0.2001	0.0063467	0.00045958	NaN	62.978	26	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55963	+		50003	34273	34784	34837							0.06174739124912776
LVMPYFYQ	8	Unmodified	_LVMPYFYQ_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7637329101562	2	530.762246	1059.50994	-0.34703	-0.00018419	2.4778	0.0013151	2.1308	0.0011309	530.7634017891512	104.06	0.48865	104.07	103.83	104.32	0.0031357					24	11	3	0	0	0	0.94001	1	13319	13319		46.766	7.7449	1	118340	+		50004	22676	34785	34838	55401	55401					-0.01743502689100751
LVMRQKADL	9	Unmodified	_LVMRQKADL_					0	0	0		ENST00000257572.5_1_12:117298148-117298622:-|nuORF	ENST00000257572.5_1_12:117298148-117298622:-|nuORF	ENST00000257572.5_1_12:117298148-117298622:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.70751953125	2	537.310426	1072.6063	-0.44277	-0.00023791	-3.6237	-0.0019471	-4.0665	-0.002185	537.3087145167514	56.628	0.77396	56.404	56.149	56.923	-0.2248					36	19	3	0	0	0	0.023239	1	6183	6183		84.916	13.62	1	387670			50005	11406	34786	34839	55402	55402					0.0729006487085826
LVMTRAPGR	9	Unmodified	_LVMTRAPGR_					0	0	0		ENST00000461778.5_1_11:47280724-47280796:+|nuORF;ENST00000407404.5_1_11:47270523-47280796:+|nuORF;ENST00000449369.5_2_11:47279261-47280796:+|nuORF;ENST00000437276.1_2_11:47279534-47280796:+|nuORF;ENST00000457932.5_2_11:47279174-47280796:+|nuORF	ENST00000461778.5_1_11:47280724-47280796:+|nuORF	ENST00000461778.5_1_11:47280724-47280796:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.30474853515625	2	500.789661	999.564769	1.7659	0.00088434	3.0885	0.0015467	4.8544	0.002431	500.7913070875075	59.21	0.39082	59.023	58.758	59.149	-0.18705					15	10	2	0	0	0	0.02435	1	6683	6683		34.173	0	1	187620			50006	13743	34787	34840	55403	55403					0.06496928902197396
LVNARDAAV	9	Unmodified	_LVNARDAAV_					0	0	0		nc|ENSG00000159588|Q96LX7-2|CCDC17;nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17	nc|ENSG00000159588|Q96LX7-2|CCDC17	nc|ENSG00000159588|Q96LX7-2|CCDC17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.7642517089844	2	464.764166	927.513779	-0.64183	-0.0002983	-0.48559	-0.00022569	-1.1274	-0.00052398	464.76391900973266	33.571	0.91515	33.571	33.135	34.05	0					73	24	5	0	0	0	0.80658	1	2454	2454		38.806	1.647	1	16958000			50007	6754	34788	34841	55404	55404					0.047123031289856954
LVNDEKKR	8	Unmodified	_LVNDEKKR_					0	0	0			REV__ENSG00000152266|ENST00000282091|PTH	REV__ENSG00000152266|ENST00000282091|PTH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2900695800781	2	501.290548	1000.56654	-0.25386	-0.00012726	-0.032713	-1.6399E-05	-0.28657	-0.00014365	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.89627	1	10117	10117		51.335	7.2187	1	2648000	+		50008	24830	34789	34842	55405	55405					0.06628261191804086
LVNEFLLKN	9	Unmodified	_LVNEFLLKN_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3161010742188	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.77768	1	11473	11473		40.778	5.6261	1	11601000			50009	4796	34790	34843	55406	55406					0.08222889028479585
LVNEFLLKN	9	Unmodified	_LVNEFLLKN_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3170776367188	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.77768	1	10800	10800		40.778	2.9666	1	17068000			50010	4796	34790	34843	55407	55407					0.08222889028479585
LVNESKPNL	9	Unmodified	_LVNESKPNL_					0	0	0			REV__ENST00000565488.5_1_1:108678984-108679029:-|nuORF	REV__ENST00000565488.5_1_1:108678984-108679029:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2819519042969	2	507.284931	1012.55531	-0.074823	-3.7956E-05	-0.80323	-0.00040747	-0.87806	-0.00044542	507.28451644448074	104.9	0.57935	104.9	104.51	105.09	0.00096893					31	18	2	0	0	0	0.75397	1	13433	13433		42.396	0	1	213670	+		50011	35275	34791	34844	55408	55408					0.04953439097653245
LVNETCNRT	9	Unmodified	_LVNETCNRT_					0	0	0		ENST00000482587.5_3_1:179834300-179834414:-|nuORF	ENST00000482587.5_3_1:179834300-179834414:-|nuORF	ENST00000482587.5_3_1:179834300-179834414:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3030395507812	2	525.255848	1048.49714	-0.12751	-6.6973E-05	3.0856	0.0016207	2.9581	0.0015538	525.2575883043227	63.63	0.61202	63.437	63.186	63.798	-0.19243					27	15	2	0	0	0	0.024397	1	7195	7195		56.721	16.148	1	487900			50012	15263	34792	34845	55409	55409					-0.0251656581926909
LVNGLVTVL	9	Unmodified	_LVNGLVTVL_					0	0	0			REV__nc|ENSG00000262628|P47884|OR1D4	REV__nc|ENSG00000262628|P47884|OR1D4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.29736328125	2	464.29731	926.580068	0.51598	0.00023957	-0.32995	-0.0001532	0.18603	8.6372E-05	464.29701225148847	84.894	0.78568	84.894	84.587	85.372	0					48	18	3	0	0	0	0.34489	1	10636	10636		69.628	8.6557	1	2026400	+		50013	29124	34793	34846	55410	55410					0.1138411897103424
LVNGLVTVL	9	Unmodified	_LVNGLVTVL_					0	0	0			REV__nc|ENSG00000262628|P47884|OR1D4	REV__nc|ENSG00000262628|P47884|OR1D4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.29731	926.580068	0.52184	0.00024229	-0.38843	-0.00018035	0.13341	6.194E-05	464.2969737859005	84.841	0.50142	84.638	84.418	84.919	-0.20329	-0.10615	-0.00029576	NaN	69.628	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97748	+		50014	29124	34793	34846							0.1138411897103424
LVNGLVTVL	9	Unmodified	_LVNGLVTVL_					0	0	0			REV__nc|ENSG00000262628|P47884|OR1D4	REV__nc|ENSG00000262628|P47884|OR1D4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.29731	926.580068	0.80657	0.00037449	-0.77068	-0.00035782	0.035891	1.6664E-05	464.29675372372293	84.781	0.41177	84.622	84.446	84.858	-0.15868	-0.12223	-0.00065072	NaN	69.628	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91905	+		50015	29124	34793	34846							0.1138411897103424
LVNGLVTVL	9	Unmodified	_LVNGLVTVL_					0	0	0			REV__nc|ENSG00000262628|P47884|OR1D4	REV__nc|ENSG00000262628|P47884|OR1D4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.29731	926.580068	0.48723	0.00022622	-0.56691	-0.00026321	-0.079676	-3.6993E-05	464.296838058816	84.806	0.37997	84.668	84.448	84.828	-0.13789	-0.075977	-0.0004615	NaN	69.628	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82729	+		50016	29124	34793	34846							0.1138411897103424
LVNGRLQE	8	Unmodified	_LVNGRLQE_					0	0	0			REV__ENST00000340703.5_1_4:9694764-9704575:+|nuORF	REV__ENST00000340703.5_1_4:9694764-9704575:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.76416015625	2	464.764166	927.513779	-0.47621	-0.00022133	-0.57139	-0.00026556	-1.0476	-0.00048689	464.76385631251856	33.461	1.0306	33.467	32.85	33.881	0.0066261					72	27	5	0	0	0	0.96719	1	2401	2401		42.474	1.0478	1	16599000	+		50017	30622	34794	34847	55411	55411					0.04712303128997064
LVNHFNAGV	9	Unmodified	_LVNHFNAGV_					0	0	0		nc|ENSG00000171169|Q69YI7-2|NAIF1;ENSG00000171169|ENST00000373078|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	nc|ENSG00000171169|Q69YI7-2|NAIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7877197265625	2	485.758884	969.503215	-0.59694	-0.00028997	1.3255	0.00064387	0.72855	0.0003539	485.75967102835665	44.939	0.79195	44.983	44.585	45.377	0.043877					30	22	2	0	0	0	0.024262	1	4265	4265		47.916	20.033	1	250650			50018	8122	34795	34848	55412	55412					0.01724320474556862
LVNKHILLE	9	Unmodified	_LVNKHILLE_					0	0	0			REV__ENSG00000198919|ENST00000361582|DZIP3	REV__ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8030395507812	2	539.834591	1077.65463	-0.62029	-0.00033486	4.4243	0.0023884	3.8041	0.0020536	539.8369140075033	102.14	0.43536	102.15	101.98	102.41	0.0073471					17	9	2	0	0	0	0.024495	1	13029	13029		34.173	13.226	1	136190	+		50019	28519	34796	34849	55413	55413					0.11890881782414908
LVNKHILLE	9	Unmodified	_LVNKHILLE_					0	0	0			REV__ENSG00000198919|ENST00000361582|DZIP3	REV__ENSG00000198919|ENST00000361582|DZIP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.834591	1077.65463	-0.70931	-0.00038291	5.0143	0.0027069	4.3049	0.002324	540.3389447268892	102.11	0.38266	101.94	101.82	102.2	-0.17178	-0.19378	0.00056631	NaN	25.574	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21772	+		50020	28519	34796	34849							0.11890881782414908
LVNLFRSHS	9	Unmodified	_LVNLFRSHS_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000486235.5_1_3:119165863-119180852:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3417358398438	2	536.79854	1071.58253	-1.2076	-0.00064822	0.86589	0.00046481	-0.34168	-0.00018341	536.7990220965888	26.893	0.92146	26.737	26.139	27.061	-0.15664					44	22	3	0	0	0	0.024477	1	1456	1456		27.882	0	1	267510			50021	8613	34797	34850	55414	55414					0.04959967428703749
LVNLHLAALT	10	Unmodified	_LVNLHLAALT_					0	0	0		ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7894287109375	2	532.826766	1063.63898	-0.13453	-7.168E-05	-0.0035242	-1.8778E-06	-0.13805	-7.3558E-05	532.8266882989055	64.393	0.38165	64.439	64.298	64.68	0.045509					14	9	2	0	0	0	0.03519	1	7521	7521		34.173	0	1	191730			50022	3930	34798	34851	55415	55415					0.1097059526537123
LVNLINKYFPG	11	Unmodified	_LVNLINKYFPG_					0	0	0		nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1;nc|ENSG00000073060|Q8WTV0-3|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.5791015625	3	426.579929	1276.71796	1.0112	0.00043135	-3.1387	-0.0013389	-2.1275	-0.00090755	426.57854737301795	36.013	1.7982	35.815	35.366	37.164	-0.19829					129	47	4	0	0	0	0.98218	1	2743	2743		50.034	20.011	1	4843000			50023	1499	34799	34852	55416	55416					0.09066822499653426
LVNLKIPLL	9	Unmodified	_LVNLKIPLL_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2;ITGA2|p.N924Y|1|0.24|ENSG00000164171|chr5:53075249-53075249|A/T|missense_variant	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7698364257812	2	511.852253	1021.68995	-0.70806	-0.00036242	2.157	0.0011041	1.449	0.00074166	512.3558266611901	26.18	0.44249	25.944	25.72	26.162	-0.23603					18	12	2	0	0	0	0.024541	1	1304	1304		12.207	0	1	274720			50024	7232	34800	34853	55417	55417					0.1799754431023075
LVNLNLNLL	9	Unmodified	_LVNLNLNLL_					0	0	0		ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2691040039062	2	513.321317	1024.62808	-0.5914	-0.00030358	0.49984	0.00025658	-0.091565	-4.7002E-05	513.3222616062859	79.61	0.25141	79.629	79.475	79.726	0.018669					8	5	2	0	0	0	0.024354	1	9809	9809		38.806	0	1	24757			50025	14492	34801	34854	55418	55418					0.11675192891084407
LVNLNRAPL	9	Unmodified	_LVNLNRAPL_					0	0	0			REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.32379150390625	2	505.311284	1008.60801	-0.41857	-0.00021151	-3.521	-0.0017792	-3.9395	-0.0019907	505.3093077657527	79.178	0.62341	79.178	79.035	79.658	0					31	14	3	0	0	0	0.023355	1	9842	9842		55.504	7.5886	1	397940	+		50026	30074	34802	34855	55419	55419					0.1040544195111579
LVNLQGTVVF	10	Unmodified	_LVNLQGTVVF_					0	0	0		nc|ENSG00000163393|Q8IZD6-2|SLC22A15;ENSG00000163393|ENST00000369503|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0393	1	11092	11092		40.778	1.5253	1	15621000			50027	7071	34803	34856	55420	55420					0.08222889028479585
LVNMAAGQVS	10	Unmodified	_LVNMAAGQVS_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2561340332031	2	495.257859	988.501166	-0.0055172	-2.7324E-06	-2.3175	-0.0011477	-2.323	-0.0011505	495.25650981559806	64.034	1.3009	63.775	63.122	64.423	-0.25824					69	33	3	0	0	0	0.54901	1	7261	7261		82.75	11.455	1	1369400			50028	6177	34804	34857	55421	55421					0.006455236744500326
LVNRNLAAS	9	Unmodified	_LVNRNLAAS_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.27783203125	2	479.277441	956.540328	0.086785	4.1594E-05	3.2211	0.0015438	3.3078	0.0015854	479.2793231244921	81.002	2.3435	81.002	79.447	81.791	0					113	56	3	0	0	0	0.6504	1	10043	10043		49.442	1.7842	1	1529300			50029	4326	34805	34858	55422	55422					0.06031992020314192
LVNRNLAAS	9	Unmodified	_LVNRNLAAS_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2777099609375	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.97455	1	10268	10268		25.574	0.12388	1	7407200			50030	4326	34805	34858	55423	55423					0.06031992020314192
LVNSSRILI	9	Unmodified	_LVNSSRILI_					0	0	0		nc|ENSG00000018236|Q12860-3|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;ENSG00000018236|ENST00000551295|CNTN1	nc|ENSG00000018236|Q12860-3|CNTN1	nc|ENSG00000018236|Q12860-3|CNTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2796936035156	2	507.818941	1013.62333	-0.083106	-4.2203E-05	0.1998	0.00010146	0.1167	5.9261E-05	507.8187852178885	24.417	0.5072	24.202	23.999	24.506	-0.2151					33	11	5	0	0	0	0.024436	1	1046	1046		16.473	1.6083	1	350250			50031	939	34806	34859	55424	55424					0.1170630874833023
LVNSYHLL	8	Unmodified	_LVNSYHLL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000103479|Q08999-2|RBL2;ENSG00000103479|ENST00000262133|RBL2	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7712097167969	2	479.77146	957.528367	0.28083	0.00013473	-0.43041	-0.0002065	-0.14958	-7.1765E-05	479.771175165179	74.985	1.3386	74.726	73.986	75.325	-0.25887					89	32	5	0	0	0	0.71833	2	9148	9148;9160		65.803	2.8247	1	8055700			50032	1698	34807	34860	55425;55426	55425					0.04790375277127623
LVNSYHLL	8	Unmodified	_LVNSYHLL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000103479|Q08999-2|RBL2;ENSG00000103479|ENST00000262133|RBL2	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.77142333984375	2	479.77146	957.528367	-0.30218	-0.00014498	0.098582	4.7297E-05	-0.2036	-9.7682E-05	479.77146013576436	74.783	1.3393	74.794	74.095	75.435	0.010376					91	32	5	0	0	0	0.6536	1	9095	9095		71.296	5.4925	1	7925300			50033	1698	34807	34860	55427	55427					0.04790375277127623
LVNVPEEPI	9	Unmodified	_LVNVPEEPI_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3;nc|ENSG00000074356|Q53F19-2|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3239440917969	2	505.281857	1008.54916	-0.090544	-4.575E-05	0.95826	0.00048419	0.86772	0.00043844	505.28166834348195	79.411	0.12119	79.43	79.354	79.475	0.018677					4	2	2	0	0	0	0.024427	1	9766	9766		51.335	25.885	1	48118			50034	1528	34808	34861	55428	55428					0.045229208661339726
LVNWKSQLPW	10	Unmodified	_LVNWKSQLPW_					0	0	0			REV__ENST00000517746.5_1_8:108264059-108264227:-|nuORF	REV__ENST00000517746.5_1_8:108264059-108264227:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.58209228515625	3	424.236274	1269.68699	-1.3607	-0.00057726	-2.0218	-0.00085773	-3.3825	-0.001435	424.2352640895705	43.99	0.38981	43.99	43.731	44.12	0					21	10	3	0	0	0	0.03519	1	4173	4173		45.022	12.988	1	182690	+		50035	34220	34809	34862	55429	55429					0.06293669185401995
LVPAFGSKP	9	Unmodified	_LVPAFGSKP_					0	0	0		ENST00000295927.3_1_3:157160232-157160277:+|nuORF	ENST00000295927.3_1_3:157160232-157160277:+|nuORF	ENST00000295927.3_1_3:157160232-157160277:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.2665710449219	2	458.268553	914.522553	-0.63385	-0.00029047	-3.7233	-0.0017063	-4.3571	-0.0019967	458.26666868268615	28.482	1.0627	28.313	27.966	29.029	-0.16897					58	24	3	0	0	0	0.35646	1	1661	1661		68.787	0.30212	1	1512400			50036	11834	34810	34863	55430	55430					0.06187276765479055
LVPAPSQLL	9	Unmodified	_LVPAPSQLL_					0	0	0		nc|ENSG00000176302|Q6PIV2-2|FOXR1	nc|ENSG00000176302|Q6PIV2-2|FOXR1	nc|ENSG00000176302|Q6PIV2-2|FOXR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.28936767578125	2	469.289485	936.564418	-0.54472	-0.00025563	0.2903	0.00013624	-0.25442	-0.0001194	469.28940218809146	48.758	0.87405	48.576	48.126	49	-0.18206					54	23	4	0	0	0	0.31247	1	4854	4854		73.975	2.679	1	2851600			50037	18536	34811	34864	55431	55431					0.09359832453992567
LVPAPSQLL	9	Unmodified	_LVPAPSQLL_					0	0	0		nc|ENSG00000176302|Q6PIV2-2|FOXR1	nc|ENSG00000176302|Q6PIV2-2|FOXR1	nc|ENSG00000176302|Q6PIV2-2|FOXR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	469.289485	936.564418	-0.22811	-0.00010705	4.8387	0.0022707	4.6106	0.0021637	469.2927560732109	48.552	0.10425	48.399	48.329	48.433	-0.15277	-0.1435	0.0041499	NaN	73.975	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29681			50038	18536	34811	34864							0.09359832453992567
LVPASKRST	9	Unmodified	_LVPASKRST_					0	0	0			REV__ENSG00000163788|ENST00000296088|SNRK	REV__ENSG00000163788|ENST00000296088|SNRK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.78680419921875	2	479.787641	957.56073	-0.12661	-6.0744E-05	-0.74567	-0.00035776	-0.87228	-0.00041851	479.7872742862401	22.42	0.65431	22.345	22.13	22.784	-0.075296					40	13	5	0	0	0	0.78069	1	790	790		40.573	1.7665	1	1130200	+		50039	25632	34812	34865	55432	55432					0.08025162680155518
LVPEFIDDL	9	Unmodified	_LVPEFIDDL_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2672119140625	2	530.78169	1059.54883	-0.29777	-0.00015805	4.4387	0.002356	4.141	0.002198	531.2858614503516	53.39	0.86784	53.132	52.644	53.512	-0.25838					47	22	4	0	0	0	0.024541	1	5562	5562		24.203	0	1	322940	+		50040	26930	34813	34866	55433	55433					0.02143501146269955
LVPERLLW	8	Unmodified	_LVPERLLW_					0	0	0			REV__ENST00000378944.9_1_19:36276198-36277438:+|nuORF	REV__ENST00000378944.9_1_19:36276198-36277438:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3038330078125	2	513.310752	1024.60695	-0.88254	-0.00045302	-2.6603	-0.0013656	-3.5428	-0.0018186	513.3092794041017	53.493	0.61677	53.346	52.985	53.602	-0.14723					48	16	4	0	0	0	0.027866	1	5799	5799		13.775	0	1	2219400	+		50041	31420	34814	34867	55434	55434					0.09563227582225409
LVPGAREVL	9	Unmodified	_LVPGAREVL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.2923583984375	2	477.292559	952.570566	-0.26305	-0.00012555	0.25229	0.00012042	-0.010758	-5.1349E-06	477.29256763116416	53.576	0.89512	53.44	53.095	53.99	-0.13617					73	26	4	0	0	0	0.36105	1	5606	5606		68.485	2.6815	1	8611900			50042	8336	34815	34868	55435	55435					0.09238350685518526
LVPGAREVL	9	Unmodified	_LVPGAREVL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.2929382324219	2	477.292559	952.570566	-0.18223	-8.6977E-05	0.068873	3.2872E-05	-0.11336	-5.4105E-05	477.292468429705	53.724	1.0148	53.479	53.088	54.103	-0.2453					73	30	4	0	0	0	0.15889	1	5645	5645		97.473	15.168	1	7478000			50043	8336	34815	34868	55436	55436					0.09238350685518526
LVPGKQLR	8	Unmodified	_LVPGKQLR_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2585144042969	2	455.795269	909.575986	-0.12791	-5.8302E-05	0.44552	0.00020307	0.31761	0.00014477	455.7952388554244	31.767	0.5995	31.836	31.606	32.206	0.068962					30	14	3	0	0	0	0.027866	1	2153	2153		26.796	0	1	513730			50044	5314	34816	34869	55437	55437					0.1175807426798201
LVPHRGVS	8	Unmodified	_LVPHRGVS_					0	0	0			REV__ENST00000569441.5_1_16:733170-733950:-|nuORF	REV__ENST00000569441.5_1_16:733170-733950:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.8885192871094	2	432.756144	863.497735	0.61261	0.00026511	-0.47656	-0.00020624	0.13604	5.8872E-05	432.7556537177174	21.903	0.62077	21.722	21.442	22.063	-0.18067					17	12	2	0	0	0	0.027866	1	714	714		19.36	3.7182	1	65311	+		50045	35352	34817	34870	55438	55438					0.06052641682754256
LVPIIRDLDP	10	Unmodified	_LVPIIRDLDP_					0	0	0			REV__nc|ENSG00000105486|P18858-3|LIG1	REV__nc|ENSG00000105486|P18858-3|LIG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.842529296875	2	575.845156	1149.67576	-0.59889	-0.00034487	-3.2038	-0.0018449	-3.8027	-0.0021898	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.91678	1	10978	10978		52.937	4.9772	1	2151700	+		50046	21530	34818	34871	55439	55439					0.10690847091268552
LVPILTQT	8	Unmodified	_LVPILTQT_					0	0	0		ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.K332Q|1|0.25|ENSG00000108424|chr17:47665153-47665153|A/C|missense_variant	ENSG00000108424|ENST00000290158|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.22625732421875	2	442.776211	883.537869	-1.1688	-0.0005175	-2.1298	-0.00094302	-3.2986	-0.0014605	442.7750978270421	29.903	0.28384	29.903	29.773	30.057	0					9	6	2	0	0	0	0.027866	1	1868	1868		23.042	0	1	45457			50047	2897	34819	34872	55440	55440					0.09144143562639329
LVPKQRYR	8	Unmodified	_LVPKQRYR_					0	0	0		L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|8|1|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|117|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|153|3|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|151|3|sense;L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|21|1|sense	L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|8|1|sense	L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|8|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2964477539062	2	530.324725	1058.6349	-0.25216	-0.00013373	1.7501	0.00092814	1.498	0.00079441	530.325699045063	106	0.67274	106	105.8	106.48	-0.0013123					26	21	2	0	0	0	0.027866	1	13596	13596		13.775	0	1	154680			50048	17841	34820	34873	55441	55441					0.10792550562291581
LVPLLLRGV	9	Unmodified	_LVPLLLRGV_					0	0	0			REV__ENSG00000176402|ENST00000312891|GJC3	REV__ENSG00000176402|ENST00000312891|GJC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.27703857421875	2	490.33677	978.658987	0.035243	1.7281E-05	0.21603	0.00010593	0.25127	0.00012321	490.33658204856914	76.422	0.69138	76.433	76.166	76.857	0.011635					49	16	4	0	0	0	0.024325	1	9357	9357		60.294	2.4827	1	493260	+		50049	27017	34821	34874	55442	55442					0.16880390995993366
LVPLLLRGV	9	Unmodified	_LVPLLLRGV_					0	0	0			REV__ENSG00000176402|ENST00000312891|GJC3	REV__ENSG00000176402|ENST00000312891|GJC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.33697509765625	2	490.33677	978.658987	-0.52421	-0.00025704	0.76539	0.0003753	0.24117	0.00011826	490.3369865508544	76.487	0.87515	76.219	75.89	76.765	-0.26806					48	20	4	0	0	0	0.64155	1	9074	9074		50.025	0	1	925040	+		50050	27017	34821	34874	55443	55443					0.16880390995993366
LVPLRSLGLS	10	Unmodified	_LVPLRSLGLS_					0	0	0		ENST00000428360.2_1_2:71297680-71299860:+|nuORF;ENST00000472519.5_1_2:71295813-71299952:+|nuORF;ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK	ENST00000428360.2_1_2:71297680-71299860:+|nuORF	ENST00000428360.2_1_2:71297680-71299860:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2390747070312	2	527.834591	1053.65463	-0.50291	-0.00026546	-0.45832	-0.00024191	-0.96123	-0.00050737	527.8344257231006	67.385	0.59816	67.097	66.872	67.47	-0.28834					33	14	3	0	0	0	0.03519	1	8054	8054		30.318	0	1	953290			50051	4043	34822	34875	55444	55444					0.12994881782424272
LVPLSLFLR	9	Unmodified	_LVPLSLFLR_					0	0	0			REV__ENSG00000130208|ENST00000592535|APOC1	REV__ENSG00000130208|ENST00000592535|APOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2825927734375	2	529.342052	1056.66955	0.22099	0.00011698	-0.12336	-6.5299E-05	0.097632	5.1681E-05	529.3418039256742	83.812	0.90155	83.642	83.409	84.311	-0.16915					43	20	3	0	0	0	0.024405	1	10128	10128		44.117	8.4985	1	338880	+		50052	23091	34823	34876	55445	55445					0.14348373650386748
LVPPKMKV	8	Unmodified	_LVPPKMKV_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.25823974609375	2	456.290974	910.567395	-0.38076	-0.00017374	-4.0786	-0.001861	-4.4594	-0.0020348	456.28866573364763	32.624	0.44405	32.636	32.299	32.743	0.011799					19	11	2	0	0	0	0.027866	1	2228	2228		42.474	17.97	1	60647	+		50053	22280	34824	34877	55446	55446					0.10853384307154101
LVPPKMKV	8	Unmodified	_LVPPKMKV_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2585144042969	2	456.290974	910.567395	-0.12411	-5.6629E-05	-1.8132	-0.00082735	-1.9373	-0.00088398	456.2911728979769	31.873	0.83877	31.942	31.445	32.284	0.06896					42	20	3	0	0	0	0.027866	1	2153	2153		40.573	16.069	1	80012	+		50054	22280	34824	34877	55447	55447					0.10853384307154101
LVPPLHPLL	9	Unmodified	_LVPPLHPLL_					0	0	0		nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	499.823495	997.632438	0.21899	0.00010945	-4.014	-0.0020063	-3.795	-0.0018968	499.8213930533353	67.489	1.0613	67.489	66.926	67.987	0					54	26	3	0	0	0	0.80342	1	8065	8065		39.021	1.993	1	1532400			50055	18176	34825	34878	55448	55448					0.1335270210464614
LVPPLPRA	8	Unmodified	_LVPPLPRA_					0	0	0			REV__ENST00000345046.10_1_X:152966207-152966375:-|nuORF	REV__ENST00000345046.10_1_X:152966207-152966375:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.7248840332031	2	431.779088	861.543623	1.2878	0.00055604	-1.5685	-0.00067726	-0.28074	-0.00012122	431.7784269551944	36.104	0.3563	35.906	35.776	36.132	-0.19829					13	9	2	0	0	0	0.027866	1	2795	2795		19.36	0	1	77707	+		50056	30695	34826	34879	55449	55449					0.10731286864984213
LVPPRGVQ	8	Unmodified	_LVPPRGVQ_					0	0	0			REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF	REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.58404541015625	2	433.266345	864.518136	0.28299	0.00012261	-2.5904	-0.0011224	-2.3075	-0.00099974	433.2646618117184	47.125	0.71297	46.856	46.561	47.274	-0.26939					30	19	2	0	0	0	0.027866	1	4636	4636		44.531	2.0566	1	249770	+		50057	30278	34827	34880	55450	55450					0.08045812342561476
LVPPRSFVP	9	Unmodified	_LVPPRSFVP_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.2908935546875	2	506.302927	1010.5913	-0.16702	-8.4562E-05	-4.4853	-0.0022709	-4.6523	-0.0023555	506.30100917795016	27.786	0.64148	27.544	27.163	27.804	-0.24217					18	14	2	0	0	0	0.024405	1	1544	1544		35.618	13.658	1	37739			50058	11087	34828	34881	55451	55451					0.0864294106518173
LVPPTIIGTN	10	Unmodified	_LVPPTIIGTN_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7892456054688	2	512.8055	1023.59645	0.17356	8.9E-05	3.9514	0.0020263	4.125	0.0021153	512.8088664538743	81.333	0.20795	81.104	80.98	81.188	-0.2289					6	4	2	0	0	0	0.03519	1	9764	9764		34.173	8.7224	1	33590			50059	5635	34829	34882	55452	55452					0.08559200137153766
LVPPTIIGTN	10	Unmodified	_LVPPTIIGTN_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.8055	1023.59645	-0.99025	-0.0005078	-1.7908	-0.00091835	-2.7811	-0.0014262	512.8062388898182	81.383	0.16338	81.406	81.288	81.452	0.023911	0.15103	-0.0027557	NaN	26.693	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38137			50060	5635	34829	34882							0.08559200137153766
LVPQARAL	8	Unmodified	_LVPQARAL_					0	0	0		ENST00000587552.5_1_19:5692045-5696439:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1	ENST00000587552.5_1_19:5692045-5696439:-|nuORF	ENST00000587552.5_1_19:5692045-5696439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.27447509765625	2	434.27417	866.533787	-0.15626	-6.7861E-05	-0.040256	-1.7482E-05	-0.19652	-8.5343E-05	434.27415018264725	47.732	1.6469	47.732	47.252	48.899	0					86	48	4	0	0	0	0.75307	2	4793	4793;4827		62.978	0	1	18306000			50061	9859	34830	34883	55453;55454	55453					0.09518098859598467
LVPQARAL	8	Unmodified	_LVPQARAL_					0	0	0		ENST00000587552.5_1_19:5692045-5696439:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1	ENST00000587552.5_1_19:5692045-5696439:-|nuORF	ENST00000587552.5_1_19:5692045-5696439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2742614746094	2	434.27417	866.533787	-0.22234	-9.6558E-05	0.065116	2.8278E-05	-0.15723	-6.828E-05	434.27417487933866	47.873	1.456	47.72	47.336	48.792	-0.15301					85	42	4	0	0	0	0.95417	1	4808	4808		44.531	0	1	19138000			50062	9859	34830	34883	55455	55455					0.09518098859598467
LVPQARAL	8	Unmodified	_LVPQARAL_					0	0	0		ENST00000587552.5_1_19:5692045-5696439:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1	ENST00000587552.5_1_19:5692045-5696439:-|nuORF	ENST00000587552.5_1_19:5692045-5696439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.2745361328125	2	434.27417	866.533787	-0.41972	-0.00018227	0.26555	0.00011532	-0.15416	-6.695E-05	434.2742455559153	47.633	1.5808	47.692	47.354	48.935	0.059093					80	45	4	0	0	0	0.75307	1	4746	4746		62.978	0	1	18334000			50063	9859	34830	34883	55456	55456					0.09518098859598467
LVPRLLGDI	9	Unmodified	_LVPRLLGDI_					0	0	0		ENST00000534074.5_1_11:47640387-47650630:-|nuORF;ENSG00000109919|ENST00000302503|MTCH2	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7578125	2	498.316035	994.617516	0.30265	0.00015081	-1.0415	-0.000519	-0.73885	-0.00036818	498.31573402785807	68.127	0.30676	68.127	68.026	68.332	0					10	7	2	0	0	0	0.024523	1	8150	8150		21.96	4.5949	1	61151			50064	3003	34831	34884	55457	55457					0.11999210236660929
LVPRLLGDI	9	Unmodified	_LVPRLLGDI_					0	0	0		ENST00000534074.5_1_11:47640387-47650630:-|nuORF;ENSG00000109919|ENST00000302503|MTCH2	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENST00000534074.5_1_11:47640387-47650630:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2595520019531	2	498.316035	994.617516	0.38056	0.00018964	-1.2187	-0.00060732	-0.83818	-0.00041768	498.31527934438213	75.458	0.35938	75.468	75.25	75.609	0.010368					15	9	2	0	0	0	0.023007	1	9194	9194		87.754	18.967	1	122640			50065	3003	34831	34884	55458	55458					0.11999210236660929
LVPRPVFLD	9	Unmodified	_LVPRPVFLD_					0	0	0			REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.3141479492188	2	528.316035	1054.61752	0.63959	0.00033791	-3.6369	-0.0019214	-2.9973	-0.0015835	528.3142680105974	97.405	1.0351	97.268	96.746	97.781	-0.1367					49	22	3	0	0	0	0.85329	1	12064	12064		35.618	1.4457	1	177890	+		50066	20860	34832	34885	55459	55459					0.09239210236660256
LVPSDPPPN	9	Unmodified	_LVPSDPPPN_					0	0	0			REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2448425292969	2	468.245275	934.475997	-0.29637	-0.00013877	-0.71762	-0.00033602	-1.014	-0.00047479	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	0.85329	1	13213	13213		35.618	3.6634	1	6721300	+		50067	30355	34833	34886	55460	55460					0.006137921435083626
LVPSDPPPN	9	Unmodified	_LVPSDPPPN_					0	0	0			REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.2447814941406	2	468.245275	934.475997	0.20109	9.4162E-05	-1.2222	-0.00057229	-1.0211	-0.00047813	468.2445715077833	103.12	2.3598	103.12	102.32	104.68	0.0054245					123	59	5	0	0	0	0.80003	1	13173	13173		39.253	2.0937	1	6608800	+		50068	30355	34833	34886	55461	55461					0.006137921435083626
LVPSDPPPN	9	Unmodified	_LVPSDPPPN_					0	0	0			REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2445983886719	2	468.245275	934.475997	0.84537	0.00039584	-1.803	-0.00084423	-0.9576	-0.00044839	468.2442937403857	103.2	1.893	103.19	102.28	104.18	-0.0046005					118	45	4	0	0	0	0.67687	1	13188	13188		47.657	3.5405	1	6166300	+		50069	30355	34833	34886	55462	55462					0.006137921435083626
LVPSDPPPN	9	Unmodified	_LVPSDPPPN_					0	0	0			REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.244873046875	2	468.245275	934.475997	-0.18849	-8.8262E-05	-1.0016	-0.00046899	-1.1901	-0.00055725	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	0.35646	1	12925	12925		68.787	15.435	1	4433200	+		50070	30355	34833	34886	55463	55463					0.006137921435083626
LVPSLLHTE	9	Unmodified	_LVPSLLHTE_					0	0	0		ENSG00000126838|ENST00000261336|PZP;ENST00000467091.1_1_12:9265282-9268445:-|nuORF;CON__ENSEMBL:ENSBTAP00000024146;ENSG00000175899|ENST00000318602|A2M	ENSG00000126838|ENST00000261336|PZP;CON__ENSEMBL:ENSBTAP00000024146;ENSG00000175899|ENST00000318602|A2M	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.25555419921875	2	504.78985	1007.56515	-0.70078	-0.00035375	-1.2505	-0.00063125	-1.9513	-0.000985	504.78898801234885	39.077	0.42121	38.854	38.652	39.073	-0.22311					14	11	2	0	0	0	0.024381	1	3245	3245		45.952	11.779	1	144480		+	50071	4218;489;8596	34834	34887	55464	55464					0.06166627103027622
LVPSRPSLAAS	11	Unmodified	_LVPSRPSLAAS_					0	0	0			REV__DLX6|p.A250V|1|0.23|ENSG00000006377|chr7:97009914-97009914|C/T|missense_variant	REV__DLX6|p.A250V|1|0.23|ENSG00000006377|chr7:97009914-97009914|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3184814453125	2	549.319306	1096.62406	-0.43544	-0.0002392	-2.1307	-0.0011704	-2.5661	-0.0014096	549.3180052231875	99.575	0.68658	99.585	99.223	99.91	0.010239					46	15	4	0	0	0	1.0344	1	12714	12714		29.17	2.4771	1	445600	+		50072	19679	34835	34888	55465	55465					0.0796110339738334
LVPTLAVAV	9	Unmodified	_LVPTLAVAV_					0	0	0		OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant;ENSG00000196341|ENST00000641015|OR8D1	OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	OR8D1|p.S224Kfs*31|1|0.07|ENSG00000196341|chr11:124310096-124310097|-/ATTAAGGAAGGTCT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.787841796875	2	441.786579	881.558604	-0.5192	-0.00022937	3.5225	0.0015562	3.0033	0.0013268	441.7880387330216	43.278	2.1204	43.041	42.8	44.92	-0.23736					124	56	5	0	0	0	0.96855	1	3917	3917		26.796	0	1	15366000			50073	9852	34836	34889	55466	55466					0.11308733942325944
LVPVHGLGAD	10	Unmodified	_LVPVHGLGAD_					0	0	0			REV__ENST00000532896.5_1_19:18304624-18307257:+|nuORF	REV__ENST00000532896.5_1_19:18304624-18307257:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.81341552734375	2	489.274367	976.53418	0.11066	5.4141E-05	0.10942	5.3534E-05	0.22007	0.00010768	489.27476584212593	58.052	0.29531	58.052	57.796	58.091	0					10	7	2	0	0	0	0.03519	1	6544	6544		23.042	3.6825	1	224730	+		50074	34589	34837	34890	55467	55467					0.04497473788796924
LVPVLLWIF	9	Unmodified	_LVPVLLWIF_					0	0	0		ENST00000273859.7_1_4:47578809-47578854:+|nuORF	ENST00000273859.7_1_4:47578809-47578854:+|nuORF	ENST00000273859.7_1_4:47578809-47578854:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.295166015625	2	550.349346	1098.68414	-0.55335	-0.00030453	-3.2242	-0.0017744	-3.7775	-0.002079	550.3474504255308	96.254	0.75041	96.254	95.821	96.571	0					28	17	2	0	0	0	0.024475	1	12250	12250		29.842	0	1	131310			50075	11674	34838	34891	55468	55468					0.1387444579854673
LVPVLLWIF	9	Unmodified	_LVPVLLWIF_					0	0	0		ENST00000273859.7_1_4:47578809-47578854:+|nuORF	ENST00000273859.7_1_4:47578809-47578854:+|nuORF	ENST00000273859.7_1_4:47578809-47578854:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2949829101562	2	550.349346	1098.68414	0.54025	0.00029733	-4.4159	-0.0024303	-3.8756	-0.002133	550.3467162157949	96.109	0.62146	96.111	95.953	96.574	0.0020752					22	14	2	0	0	0	0.024475	1	12162	12162		29.842	0	1	61798			50076	11674	34838	34891	55469	55469					0.1387444579854673
LVPVSTPY	8	Unmodified	_LVPVSTPY_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3	REV__ENSG00000134107|ENST00000256495|BHLHE40	REV__ENSG00000134107|ENST00000256495|BHLHE40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.1490478515625	2	438.247286	874.48002	-0.32257	-0.00014136	-4.1272	-0.0018087	-4.4498	-0.0019501	438.24540997984803	43.275	0.60824	43.162	42.891	43.499	-0.11253					25	16	2	0	0	0	0.027866	1	3918	3918		54.765	19.564	1	459210			50077	23421	34839	34892	55470	55470					0.03775881637227485
LVPVSTPY	8	Unmodified	_LVPVSTPY_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3	REV__ENSG00000134107|ENST00000256495|BHLHE40	REV__ENSG00000134107|ENST00000256495|BHLHE40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.14874267578125	2	438.247286	874.48002	-0.60274	-0.00026415	-4.1259	-0.0018082	-4.7286	-0.0020723	438.2452883267942	43.478	0.46661	43.241	43.024	43.49	-0.23736					20	12	2	0	0	0	0.027866	1	3943	3943		54.765	19.564	1	429040			50078	23421	34839	34892	55471	55471					0.03775881637227485
LVPYLVLLI	9	Unmodified	_LVPYLVLLI_					0	0	0		ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7879638671875	2	521.849179	1041.6838	0.094337	4.923E-05	-4.2177	-0.002201	-4.1233	-0.0021518	521.8468303951369	52.881	0.3983	52.691	52.47	52.868	-0.18982					15	9	2	0	0	0	0.024475	1	5476	5476		29.842	1.9593	1	207920			50079	9953	34840	34893	55472	55472					0.16463026078713483
LVPYPQGGEP	10	Unmodified	_LVPYPQGGEP_					0	0	0			REV__nc|ENSG00000164078|Q04912-2|MST1R	REV__nc|ENSG00000164078|Q04912-2|MST1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2388916015625	2	528.771657	1055.52876	0.019862	1.0502E-05	-0.18471	-9.7669E-05	-0.16485	-8.7167E-05	528.7711233178369	68.12	0.56078	67.887	67.636	68.196	-0.23376					22	13	3	0	0	0	0.03519	1	7841	7841		27.882	0	1	735610	+		50080	25687	34841	34894	55473	55473					0.003217502063534994
LVQDLHLIN	9	Unmodified	_LVQDLHLIN_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|41|2|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|41|2|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|41|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.8082885742188	2	532.808574	1063.60259	0.21512	0.00011462	1.237	0.00065911	1.4522	0.00077372	532.8088655419347	70.903	1.2018	70.903	70.44	71.642	0					100	29	6	0	0	0	0.77768	1	8571	8571		40.778	7.9657	1	3105700			50081	17713	34842	34895	55474	55474					0.07333718368658992
LVQEKRAR	8	Unmodified	_LVQEKRAR_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2904968261719	2	500.306532	998.598512	-0.096766	-4.8413E-05	2.4143	0.0012079	2.3175	0.0011595	500.3076067737825	86.217	0.94603	86.171	85.861	86.807	-0.045105					32	21	2	0	0	0	0.027866	1	10833	10833		23.042	0	1	128680	+		50082	20729	34843	34896	55475	55475					0.09915673665602753
LVQEVHQN	8	Unmodified	_LVQEVHQN_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.79022216796875	2	483.753798	965.493044	0.17797	8.6096E-05	-0.083025	-4.0164E-05	0.09495	4.5932E-05	483.7537137913447	36.405	0.5027	36.189	35.947	36.45	-0.21661					29	12	3	0	0	0	0.027866	1	2877	2877		65.803	5.5092	1	495560			50083	2598	34844	34897	55476	55476					0.008917127493305088
LVQEVHQN	8	Unmodified	_LVQEVHQN_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.79058837890625	2	483.753798	965.493044	1.547	0.00074834	-1.3326	-0.00064464	0.21438	0.00010371	483.7530141988923	36.346	0.53976	36.147	35.876	36.416	-0.19829					34	13	4	0	0	0	0.027866	1	2865	2865		65.803	16.362	1	551180			50084	2598	34844	34897	55477	55477					0.008917127493305088
LVQFTKDEI	9	Unmodified	_LVQFTKDEI_					0	0	0			REV__ENSG00000078070|ENST00000265594|MCCC1	REV__ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.8184814453125	2	546.800414	1091.58628	-1.3086	-0.00071554	0.39647	0.00021679	-0.91212	-0.00049875	546.8001403869661	64.859	0.52819	64.896	64.517	65.045	0.037384					13	13	2	0	0	0	0.024261	1	7517	7517		37.812	0	1	88901	+		50085	20602	34845	34898	55478	55478					0.04414592411899321
LVQGRLTAL	9	Unmodified	_LVQGRLTAL_					0	0	0			REV__ENSG00000274286|ENST00000620793|ADRA2B	REV__ENSG00000274286|ENST00000620793|ADRA2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.8050537109375	2	485.805834	969.597115	-0.55959	-0.00027185	0.29343	0.00014255	-0.26616	-0.0001293	485.8059209527943	34.494	1.1023	34.494	34.168	35.27	0					75	28	4	0	0	0	0.67687	1	2601	2601		47.657	3.1263	1	4612900	+		50086	29181	34846	34899	55479	55479					0.11110039576828967
LVQIALNVW	9	Unmodified	_LVQIALNVW_					0	0	0			REV__ENSG00000158473|ENST00000674085|CD1D	REV__ENSG00000158473|ENST00000674085|CD1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2388916015625	2	528.316035	1054.61752	0.11279	5.959E-05	-3.194	-0.0016874	-3.0812	-0.0016279	528.3144723792301	67.906	0.4016	67.668	67.549	67.951	-0.23814					13	9	2	0	0	0	0.024535	1	7818	7818		18.324	0	1	130610	+		50087	25198	34847	34900	55480	55480					0.09239210236660256
LVQKAGALQV	10	Unmodified	_LVQKAGALQV_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8367309570312	2	513.818941	1025.62333	-0.30123	-0.00015478	1.3341	0.00068547	1.0328	0.00053069	513.8200242935134	68.334	0.57697	68.334	68.064	68.641	0					27	14	2	0	0	0	0.03519	1	8200	8200		20.947	3.582	1	578730			50088	8217	34848	34901	55481	55481					0.11154308748314179
LVQKEVAD	8	Unmodified	_LVQKEVAD_					0	0	0		ENSG00000103021|ENST00000219299|CCDC113	ENSG00000103021|ENST00000219299|CCDC113	ENSG00000103021|ENST00000219299|CCDC113	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26904296875	2	451.2531	900.491647	-1.2308	-0.00055538	4.2004	0.0018954	2.9696	0.0013401	451.2551573870147	38.801	0.68848	38.828	38.197	38.886	0.027275					23	18	2	0	0	0	0.027866	1	3174	3174		29.15	0	1	577420			50089	2454	34849	34902	55482	55482					0.037420786605594
LVQKLYLQ	8	Unmodified	_LVQKLYLQ_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2478942871094	2	502.810585	1003.60662	0.19108	9.6079E-05	-0.84467	-0.00042471	-0.65359	-0.00032863	502.8098299429658	61.156	0.56872	61.227	61.022	61.59	0.071125					34	14	4	0	0	0	0.027866	1	6972	6972		97.473	12.312	1	854450	+		50090	25714	34850	34903	55483	55483					0.10495807862366746
LVQKMIHI	8	Unmodified	_LVQKMIHI_					0	0	0			REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7635192871094	2	491.29933	980.584108	0.2134	0.00010484	3.2329	0.0015883	3.4463	0.0016932	491.300786761295	18.296	0.49335	18.165	17.957	18.45	-0.13147					14	9	2	0	0	0	0.027866	1	244	244		20.482	1.1219	1	19980	+		50091	31749	34851	34904	55484	55484					0.09303885193105543
LVQKMIHI	8	Unmodified	_LVQKMIHI_					0	0	0			REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.29933	980.584108	3.2382	0.0015909	0.6826	0.00033536	3.9208	0.0019263	491.29943783953263	18.05	0.44003	18.05	17.844	18.284	0	-0.12187	-0.00080861	NaN	20.482	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31988	+		50092	31749	34851	34904							0.09303885193105543
LVQKMIHI	8	Unmodified	_LVQKMIHI_					0	0	0			REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.29933	980.584108	4.0497	0.0019896	-0.094799	-4.6575E-05	3.9549	0.001943	491.29900079042045	18.238	0.27919	18.301	18.222	18.501	0.063307	0.12928	-0.0015725	NaN	20.482	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6502.8	+		50093	31749	34851	34904							0.09303885193105543
LVQKMKEN	8	Unmodified	_LVQKMKEN_					0	0	0			REV__ENSG00000159079|ENST00000290155|CFAP298	REV__ENSG00000159079|ENST00000290155|CFAP298	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2744140625	2	495.276052	988.537551	0.65266	0.00032325	-3.9686	-0.0019656	-3.3159	-0.0016423	495.2739857891853	72.177	0.89085	72.187	71.802	72.693	0.0097733					59	22	4	0	0	0	0.96769	1	8724	8724		42.396	1.618	1	2560800	+		50094	25230	34852	34905	55485	55485					0.042824005711622704
LVQKVKVAGG	10	Unmodified	_LVQKVKVAGG_					0	0	0		ENST00000467820.5_1_1:155292812-155294999:+|nuORF;ENST00000492536.5_1_1:155294335-155294999:+|nuORF	ENST00000467820.5_1_1:155292812-155294999:+|nuORF	ENST00000467820.5_1_1:155292812-155294999:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.83160400390625	2	499.821484	997.628415	-1.0952	-0.0005474	0.63008	0.00031493	-0.46511	-0.00023247	499.8215529031004	44.791	0.72895	44.58	44.221	44.95	-0.21109					33	18	3	0	0	0	0.03519	1	4181	4181		40.778	0	1	822000			50095	14853	34853	34906	55486	55486					0.1295061261095043
LVQLDFYV	8	Unmodified	_LVQLDFYV_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.83197021484375	2	498.773668	995.532783	-0.16032	-7.9963E-05	-4.3904	-0.0021898	-4.5507	-0.0022698	498.7713099285637	44.709	0.93152	44.745	44.241	45.173	0.0369					61	26	3	0	0	0	0.027866	1	4189	4189		73.975	19.252	1	1576000	+		50096	26806	34854	34907	55487	55487					0.03483839700038516
LVQLLVSP	8	Unmodified	_LVQLLVSP_					0	0	0		nc|ENSG00000186007|Q68G75-4|LEMD1;nc|ENSG00000186007|Q68G75-5|LEMD1;ENSG00000186007|ENST00000367153|LEMD1	nc|ENSG00000186007|Q68G75-4|LEMD1	nc|ENSG00000186007|Q68G75-4|LEMD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7801513671875	2	434.778754	867.542954	0.064442	2.8018E-05	3.0928	0.0013447	3.1572	0.0013727	434.7799380163852	46.595	1.8193	46.499	45.887	47.706	-0.096649					172	49	5	0	0	0	1.0338	1	4519	4519		31.955	0	1	5911100			50097	9503	34855	34908	55488	55488					0.10388447425282266
LVQLLVSP	8	Unmodified	_LVQLLVSP_					0	0	0		nc|ENSG00000186007|Q68G75-4|LEMD1;nc|ENSG00000186007|Q68G75-5|LEMD1;ENSG00000186007|ENST00000367153|LEMD1	nc|ENSG00000186007|Q68G75-4|LEMD1	nc|ENSG00000186007|Q68G75-4|LEMD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7793273925781	2	434.778754	867.542954	0.072718	3.1616E-05	2.8406	0.001235	2.9133	0.0012666	434.77984164352523	46.699	1.5772	46.505	46.165	47.742	-0.19387					162	43	6	0	0	0	0.97924	1	4524	4524		40.573	1.7665	1	7314300			50098	9503	34855	34908	55489	55489					0.10388447425282266
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.3229370117188	2	564.324588	1126.63462	-1.3733	-0.000775	0.45679	0.00025778	-0.91654	-0.00051723	564.3247825498618	62.095	1.2602	62.095	61.72	62.98	0					71	35	4	0	0	0	0.42446	4	7229	7199;7220;7229;7244		96.19	15.736	1	15817000			50099	984	34856	34909	55490;55491;55492;55493	55492					0.0763708605179545
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3237915039062	2	564.324588	1126.63462	-0.96885	-0.00054675	-0.24477	-0.00013813	-1.2136	-0.00068488	564.324444620117	62.291	1.1884	62.052	61.675	62.863	-0.23917					75	33	5	0	0	0	0.42446	3	7234	7200;7211;7234		96.19	23.568	1	20166000			50100	984	34856	34909	55494;55495;55496	55496					0.0763708605179545
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.322998046875	2	564.324588	1126.63462	-1.4956	-0.000844	0.087224	4.9223E-05	-1.4084	-0.00079478	564.3245552934934	62.003	1.3634	62.066	61.735	63.098	0.062763					80	35	5	0	0	0	0.37169	4	7136	7103;7125;7136;7147		101.6	16.44	1	15960000			50101	984	34856	34909	55497;55498;55499;55500	55499					0.0763708605179545
LVQPATSGL	9	Unmodified	_LVQPATSGL_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2420349121094	2	443.255643	884.496732	-1.1322	-0.00050184	2.7384	0.0012138	1.6063	0.00071198	443.25590945246466	37.983	0.87169	38.01	37.558	38.429	0.027279					40	24	3	0	0	0	0.022083	1	3126	3126		87.754	13.499	1	614100	+		50102	20824	34857	34910	55501	55501					0.049863825231796
LVQPATSGL	9	Unmodified	_LVQPATSGL_					0	0	0			REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C	REV__nc|ENSG00000088833|Q9UNZ2-6|NSFL1C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.255643	884.496732	-0.33053	-0.00014651	12.976	0.0057519	12.646	0.0056053	443.26130303359093	37.753	0.78561	37.573	37.282	38.068	-0.17929	-0.13126	-2.7925E-05	NaN	87.754	58	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2294000	+		50103	20824	34857	34910							0.049863825231796
LVQPKSVEP	9	Unmodified	_LVQPKSVEP_					0	0	0			REV__ENST00000518451.1_1_7:27179727-27192134:-|nuORF	REV__ENST00000518451.1_1_7:27179727-27192134:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7900695800781	2	498.78985	995.565146	-0.055861	-2.7863E-05	-0.14628	-7.2962E-05	-0.20214	-0.00010083	498.78966313093935	70.172	1.3431	69.958	68.945	70.288	-0.21425					91	32	6	0	0	0	0.27161	1	8183	8183		79.451	2.6044	1	7758300	+		50104	34235	34858	34911	55502	55502					0.06718627103043673
LVQQNWVSL	9	Unmodified	_LVQQNWVSL_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.802734375	2	543.800749	1085.58694	-0.84096	-0.00045731	3.4607	0.0018819	2.6197	0.0014246	543.8024217066045	56.828	1.1808	56.828	56.351	57.532	0					87	32	4	0	0	0	0.53979	1	6375	6375		56.721	1.9447	1	10205000	+		50105	27318	34859	34912	55503	55503					0.04757431851612637
LVQQNWVSL	9	Unmodified	_LVQQNWVSL_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8021240234375	2	543.800749	1085.58694	-0.79178	-0.00043057	3.0441	0.0016554	2.2523	0.0012248	543.802360796175	56.983	1.1587	56.819	56.423	57.582	-0.16432					67	31	3	0	0	0	0.31037	2	6345	6345;6370		74.255	16.025	1	8991000	+		50106	27318	34859	34912	55504;55505	55504					0.04757431851612637
LVQQNWVSL	9	Unmodified	_LVQQNWVSL_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8023681640625	2	543.800749	1085.58694	-0.98126	-0.00053361	3.2999	0.0017945	2.3187	0.0012609	543.80250044111	56.703	1.0714	56.801	56.397	57.468	0.097893					67	29	3	0	0	0	0.42604	1	6266	6266		64.207	5.4253	1	11152000	+		50107	27318	34859	34912	55506	55506					0.04757431851612637
LVQRLGLTF	9	Unmodified	_LVQRLGLTF_					0	0	0		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.8231811523438	2	523.821484	1045.62842	0.43204	0.00022631	2.624	0.0013745	3.056	0.0016008	523.822689034552	18.728	0.69247	18.572	18.346	19.039	-0.15637					26	13	3	0	0	0	0.83071	1	346	346		37.159	1.5408	1	506970			50108	5503	34860	34913	55507	55507					0.10742612610920332
LVQRLLKWRA	10	Unmodified	_LVQRLLKWRA_					0	0	0			REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2864685058594	3	428.275063	1281.80336	-0.87712	-0.00037565	0.18849	8.0726E-05	-0.68863	-0.00029492	428.2752258300627	62.917	0.50111	62.917	62.729	63.23	0					15	12	2	0	0	0	0.03519	1	7351	7351		20.03	6.5225	1	240540	+		50109	24296	34861	34914	55508	55508					0.17373032475984473
LVQRLLKWRA	10	Unmodified	_LVQRLLKWRA_					0	0	0			REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2868347167969	3	428.275063	1281.80336	-0.33069	-0.00014163	-0.38404	-0.00016448	-0.71473	-0.0003061	428.27497270883026	63.153	0.43182	62.913	62.736	63.168	-0.23926					15	10	2	0	0	0	0.03519	1	7344	7344		26.063	6.8007	1	230000	+		50110	24296	34861	34914	55509	55509					0.17373032475984473
LVQRTSVLF	9	Unmodified	_LVQRTSVLF_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8204345703125	2	531.818941	1061.62333	5.3714	0.0028566	-2.0876	-0.0011102	3.2837	0.0017463	531.8176283793784	16.878	0.49167	16.624	16.48	16.971	-0.25378					31	13	3	0	0	0	0.33245	1	89	89		71.296	10.324	1	381360			50111	7594	34862	34915	55510	55510					0.09498308748311501
LVQRTSVLF	9	Unmodified	_LVQRTSVLF_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.818941	1061.62333	-0.6504	-0.00034589	3.796	0.0020188	3.1456	0.0016729	531.8207631336703	16.802	0.69605	16.594	16.418	17.115	-0.20777	-0.03304	0.0032102	NaN	71.296	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154810			50112	7594	34862	34915							0.09498308748311501
LVQSGANVHA	10	Unmodified	_LVQSGANVHA_					0	0	0		ENSG00000144031|ENST00000360589|ANKRD53;nc|ENSG00000144031|Q8N9V6-2|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.3345642089844	2	498.267073	994.519593	-0.24746	-0.0001233	4.4693	0.0022269	4.2218	0.0021036	498.26909693925245	74.729	0.69461	74.739	74.397	75.092	0.010376					26	16	2	0	0	0	0.03519	1	9036	9036		68.787	18.762	1	389400			50113	5713	34863	34916	55511	55511					0.022114016406590054
LVQSGPEVK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LVQSGPEVK_					1	0	0		ENST00000522512.1_1_14:106774247-106774349:-|nuORF;nc|ENSG00000211968|A0A0C4DH39|IGHV1-58	ENST00000522512.1_1_14:106774247-106774349:-|nuORF	ENST00000522512.1_1_14:106774247-106774349:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7796936035156	2	499.779482	997.544411	-0.50356	-0.00025167	1.9736	0.00098635	1.47	0.00073468	499.7800797569383	32.852	0.86176	32.852	32.494	33.356	0					88	22	6	0	0	0	0.48817	1	2324	2324		60.118	14.166	1	4029000			50114	16030	34864	34917	55512	55512					0.04554036723379795
LVQSGPEVK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LVQSGPEVK_					1	0	0		ENST00000522512.1_1_14:106774247-106774349:-|nuORF;nc|ENSG00000211968|A0A0C4DH39|IGHV1-58	ENST00000522512.1_1_14:106774247-106774349:-|nuORF	ENST00000522512.1_1_14:106774247-106774349:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.77960205078125	2	499.779482	997.544411	0.096677	4.8317E-05	1.3302	0.00066483	1.4269	0.00071315	499.7798017173027	32.623	0.90079	32.686	32.315	33.216	0.062885					99	23	6	0	0	0	0.51687	1	2227	2227		58.23	7.0372	1	3514200			50115	16030	34864	34917	55513	55513					0.04554036723379795
LVQSILANL	9	Unmodified	_LVQSILANL_					0	0	0			REV__COPS7B|p.T28N|1|0.43|ENSG00000144524|chr2:231788653-231788653|C/A|missense_variant	REV__COPS7B|p.T28N|1|0.43|ENSG00000144524|chr2:231788653-231788653|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.77166748046875	2	485.800217	969.585882	-0.11883	-5.7727E-05	0.50849	0.00024702	0.38966	0.0001893	485.7998607294955	67.736	0.65498	67.756	67.426	68.081	0.019768					25	16	2	0	0	0	0.022482	1	8001	8001		82.75	0	1	398970	+		50116	19608	34865	34918	55514	55514					0.09987217482705546
LVQSLKEYI	9	Unmodified	_LVQSLKEYI_					0	0	0		ENST00000478055.1_1_5:131553347-131562829:-|nuORF;ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENST00000478055.1_1_5:131553347-131562829:-|nuORF;ENSG00000072682|ENST00000360568|P4HA2	ENST00000478055.1_1_5:131553347-131562829:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.821044921875	2	546.818607	1091.62266	-0.48313	-0.00026418	2.9384	0.0016068	2.4553	0.0013426	546.821116872408	64.405	1.0762	64.451	63.939	65.015	0.045502					79	28	5	0	0	0	0.31037	1	7493	7493		74.255	2.3776	1	8562400			50117	15126;1485	34866	34919	55515	55515					0.08051469308588821
LVQTQQVQPQN	11	Unmodified	_LVQTQQVQPQN_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.841552734375	2	641.841133	1281.66771	1.9106	0.0012263	-2.7444	-0.0017615	-0.83378	-0.00053515	641.8395243486109	109.95	0.55971	109.95	109.79	110.35	0					37	18	4	0	0	0	1.0075	1	13980	13980		35.152	3.6222	1	397160			50118	6027	34867	34920	55516	55516					0.03814668103859731
LVQVTPQTQ	9	Unmodified	_LVQVTPQTQ_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3314208984375	2	507.284931	1012.55531	-0.03899	-1.9779E-05	-0.65828	-0.00033394	-0.69727	-0.00035372	507.28443803767914	37.437	0.66582	37.469	37.189	37.854	0.032269					38	17	3	0	0	0	0.024374	1	3034	3034		40.778	0	1	900560	+		50119	24301	34868	34921	55517	55517					0.04953439097653245
LVRAFLFT	8	Unmodified	_LVRAFLFT_					0	0	0			REV__ENST00000381323.7_1_2:16733598-16733823:-|nuORF	REV__ENST00000381323.7_1_2:16733598-16733823:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.79022216796875	2	483.792195	965.569838	-0.12779	-6.1822E-05	-4.3827	-0.0021203	-4.5104	-0.0021821	483.79006972796594	36.645	1.3437	36.429	36.088	37.432	-0.21661					71	33	3	0	0	0	0.68535	2	2877	2865;2877		68.485	7.0212	1	9174100	+		50120	31513	34869	34922	55518;55519	55519					0.08567556036473434
LVRAKTPDP	9	Unmodified	_LVRAKTPDP_					0	0	0			REV__ENSG00000005302|ENST00000312196|MSL3	REV__ENSG00000005302|ENST00000312196|MSL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7961120605469	2	498.795466	995.57638	0.88511	0.00044149	0.56322	0.00028093	1.4483	0.00072242	498.7955811843013	18.088	0.69086	17.932	17.655	18.346	-0.15637					32	13	3	0	0	0	0.62163	1	271	271		51.335	0.14276	1	244950	+		50121	19802	34870	34923	55520	55520					0.07841449197167094
LVRALQDEV	9	Unmodified	_LVRALQDEV_					0	0	0			REV__ENST00000603132.1_1_12:55196819-55197167:-|nuORF	REV__ENST00000603132.1_1_12:55196819-55197167:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.77001953125	2	521.798206	1041.58186	-0.95743	-0.00049959	0.90642	0.00047297	-0.051011	-2.6618E-05	521.7985054473044	52.276	0.45643	52.157	51.904	52.361	-0.11876					27	11	3	0	0	0	0.024261	1	5436	5436		74.255	40.333	1	1205600	+		50122	35893	34871	34924	55521	55521					0.0627312798899311
LVRARIKE	8	Unmodified	_LVRARIKE_					0	0	0			REV__ENSG00000109674|ENST00000264596|NEIL3	REV__ENSG00000109674|ENST00000264596|NEIL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.80096435546875	2	492.819276	983.623999	-0.58384	-0.00028773	-2.7035	-0.0013323	-3.2874	-0.0016201	492.81800191652576	36.188	0.23635	36.226	36.031	36.267	0.038044					13	6	3	0	0	0	0.027866	1	2783	2783		40.778	8.8233	1	217970	+		50123	21807	34872	34925	55522	55522					0.13153148188030173
LVRCRRQL	8	Unmodified	_LVRCRRQL_					0	0	0			REV__ENST00000423008.1_1_7:1203896-1204070:+|nuORF	REV__ENST00000423008.1_1_7:1203896-1204070:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.80078125	2	522.316377	1042.6182	-1.0624	-0.00055491	-2.707	-0.0014139	-3.7694	-0.0019688	522.3148753954727	48.351	0.58624	48.351	48.174	48.761	0					37	16	3	0	0	0	0.027866	1	4995	4995		65.897	0	1	475440	+		50124	32207	34873	34926	55523	55523					0.0985972640471573
LVREIYKKTQ	10	Unmodified	_LVREIYKKTQ_					0	0	0			REV__ENST00000438698.1_1_3:10029596-10035934:+|nuORF	REV__ENST00000438698.1_1_3:10029596-10035934:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2166748046875	3	426.590717	1276.75032	6.58E-05	2.807E-08	0.054993	2.346E-05	0.055059	2.3488E-05	426.59063239358625	27.358	0.46577	27.116	26.869	27.335	-0.24217					16	10	2	0	0	0	0.03519	1	1476	1476		30.569	27.16	1	49145	+		50125	32496	34874	34927	55524	55524					0.12301609902624477
LVREIYKKTQ	10	Unmodified	_LVREIYKKTQ_					0	0	0			REV__ENST00000438698.1_1_3:10029596-10035934:+|nuORF	REV__ENST00000438698.1_1_3:10029596-10035934:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	426.590717	1276.75032	-0.26955	-0.00011499	0.34151	0.00014569	0.071958	3.0696E-05	426.59077522710874	27.214	0.50849	27.046	26.851	27.359	-0.16816	-0.034982	0.00018534	NaN	13.508	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59893	+		50126	32496	34874	34927							0.12301609902624477
LVRESAAH	8	Unmodified	_LVRESAAH_					0	0	0			REV__ENSG00000130560|ENST00000371756|UBAC1	REV__ENSG00000130560|ENST00000371756|UBAC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.787841796875	2	441.743234	881.471915	-0.72326	-0.0003195	2.949	0.0013027	2.2257	0.00098321	441.74467984836576	40.964	0.45187	40.734	40.589	41.041	-0.2303					15	11	2	0	0	0	0.027866	1	3585	3585		26.796	19.603	1	61398	+		50127	23127	34875	34928	55525	55525					0.0264374744045881
LVRFRKGK	8	Unmodified	_LVRFRKGK_					0	0	0			REV__ENSG00000167670|ENST00000301280|CHAF1A	REV__ENSG00000167670|ENST00000301280|CHAF1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2639465332031	2	502.329811	1002.64507	-0.44904	-0.00022557	2.5499	0.0012809	2.1009	0.0010553	502.33090796629847	76.066	0.11328	75.794	75.699	75.812	-0.27266					4	2	2	0	0	0	0.027866	1	9008	9008		44.531	8.0843	1	60164	+		50128	26174	34876	34929	55526	55526					0.14385158287564082
LVRGDPKTQ	9	Unmodified	_LVRGDPKTQ_					0	0	0			REV__ENST00000356462.10_1_18:55992307-55996250:+|nuORF	REV__ENST00000356462.10_1_18:55992307-55996250:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.33148193359375	2	507.290548	1012.56654	-1.0304	-0.0005227	1.8345	0.00093065	0.80416	0.00040794	507.2908909634787	37.65	0.52191	37.579	37.407	37.929	-0.071629					19	14	2	0	0	0	0.024381	1	3049	3049		45.952	8.1404	1	332310	+		50129	30793	34877	34930	55527	55527					0.060762611917994036
LVRGNVVVK	9	Unmodified	_LVRGNVVVK_					0	0	0			REV__ENST00000531675.1_1_6:139272213-139308858:-|nuORF	REV__ENST00000531675.1_1_6:139272213-139308858:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.8008728027344	2	492.321651	982.62875	-0.86293	-0.00042484	-1.2348	-0.00060794	-2.0978	-0.0010328	492.32182673562687	36.178	0.4474	36.178	35.886	36.334	0					21	12	2	0	0	0	0.02435	1	2855	2855		19.997	0	1	319630	+		50130	23559	34878	34931	55528	55528					0.136740323308004
LVRKDLQNF	9	Unmodified	_LVRKDLQNF_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7672119140625	2	566.827298	1131.64004	-0.46776	-0.00026514	-0.16298	-9.2381E-05	-0.63074	-0.00035752	566.8271034414432	39.276	0.56542	39.053	38.857	39.422	-0.22311					35	14	3	0	0	0	0.024539	1	3325	3325		20.947	0	1	758350			50131	7050	34879	34932	55529	55529					0.07948809634262943
LVRKLQGTEP	10	Unmodified	_LVRKLQGTEP_					0	0	0		ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;ENST00000463168.1_1_6:43040975-43041131:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4	ENSG00000137171|ENST00000347162|KLC4	ENSG00000137171|ENST00000347162|KLC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.8219604492188	2	570.840405	1139.66626	-0.74834	-0.00042718	3.8554	0.0022008	3.107	0.0017736	570.8425065130043	51.936	0.21242	51.936	51.836	52.049	0					6	5	2	0	0	0	0.03519	1	5534	5534		19.997	0.89325	1	49311			50132	5095	34880	34933	55530	55530					0.10201078805766883
LVRKLVVS	8	Unmodified	_LVRKLVVS_					0	0	0			REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.31292724609375	2	457.313295	912.612037	-0.018014	-8.2382E-06	-0.46122	-0.00021092	-0.47924	-0.00021916	457.313042497808	44.483	1.4308	44.52	44.142	45.573	0.0369					113	41	4	0	0	0	0.81662	1	4211	4211		57.811	13.694	1	14121000	+		50133	24525	34881	34934	55531	55531					0.1522353144483759
LVRKRSGG	8	Unmodified	_LVRKRSGG_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5;REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.7747497558594	2	436.774868	871.535184	-0.98134	-0.00042863	0.7813	0.00034125	-0.20004	-8.7372E-05	436.7751362763108	90.163	2.4309	90.008	89.479	91.91	-0.1552					175	57	5	0	0	0	1.0574	1	11073	11073		24.203	1.1603	1	32770000	+		50134	23137;31135	34882	34935	55532	55532					0.09427732948381617
LVRKRSGG	8	Unmodified	_LVRKRSGG_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5;REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.77484130859375	2	436.774868	871.535184	-0.55495	-0.00024239	0.44462	0.0001942	-0.11032	-4.8187E-05	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	1.0574	1	11062	11062		25.45	0	1	24367000	+		50135	23137;31135	34882	34935	55533	55533					0.09427732948381617
LVRLAVKP	8	Unmodified	_LVRLAVKP_					0	0	0			REV__ENST00000577733.5_1_17:79966858-79975195:+|nuORF	REV__ENST00000577733.5_1_17:79966858-79975195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2536926269531	2	448.308013	894.601472	0.41183	0.00018463	-0.58903	-0.00026407	-0.1772	-7.9438E-05	448.30761430070237	49.14	0.53498	49.14	48.864	49.399	0					23	14	2	0	0	0	0.027866	1	5066	5066		35.201	0	1	184470	+		50136	26393	34883	34936	55534	55534					0.1499554879040943
LVRLAVKP	8	Unmodified	_LVRLAVKP_					0	0	0			REV__ENST00000577733.5_1_17:79966858-79975195:+|nuORF	REV__ENST00000577733.5_1_17:79966858-79975195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.25390625	2	448.308013	894.601472	0.00043604	1.9548E-07	0.15966	7.1578E-05	0.1601	7.1773E-05	448.3079236931482	49.391	0.61627	49.238	48.864	49.481	-0.15277					22	16	2	0	0	0	0.027866	1	5093	5093		44.531	14.69	1	162250	+		50137	26393	34883	34936	55535	55535					0.1499554879040943
LVRLEVSL	8	Unmodified	_LVRLEVSL_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2690734863281	2	464.794935	927.575317	0.46616	0.00021667	-0.28384	-0.00013193	0.18232	8.474E-05	464.79467579831885	65.894	0.54061	65.894	65.643	66.184	0					25	13	4	0	0	0	0.027866	1	7832	7832		47.916	15.961	1	806600	+		50138	19655	34884	34937	55536	55536					0.10863234828264012
LVRLVVRSY	9	Unmodified	_LVRLVVRSY_					0	0	0			REV__ENSG00000111361|ENST00000424014|EIF2B1	REV__ENSG00000111361|ENST00000424014|EIF2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8040161132812	2	552.848033	1103.68151	0.054006	2.9857E-05	-0.057403	-3.1735E-05	-0.0033971	-1.8781E-06	552.8485836981781	25.359	0.2452	25.439	25.336	25.581	0.08009					6	5	2	0	0	0	0.024523	1	1145	1145		21.96	0	1	14893	+		50139	21913	34885	34938	55537	55537					0.13381990393600063
LVRMAGGT	8	Unmodified	_LVRMAGGT_					0	0	0		ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF	ENSG00000165282|ENST00000378617|PIGO	ENSG00000165282|ENST00000378617|PIGO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.22528076171875	2	402.723455	803.432358	0.161	6.4837E-05	-2.1744	-0.0008757	-2.0134	-0.00081086	402.7220118821816	27.226	1.2863	27.214	26.745	28.031	-0.012983					80	33	4	0	0	0	1.043	1	1485	1485		30.504	0.6621	1	2101000			50140	7392	34886	34939	55538	55538					0.02277904165396194
LVRPCPPSL	9	Unmodified	_LVRPCPPSL_					0	0	0			REV__ENST00000538765.2_1_16:3340632-3340839:+|nuORF	REV__ENST00000538765.2_1_16:3340632-3340839:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7923583984375	2	491.281137	980.547722	-0.48965	-0.00024056	0.78564	0.00038597	0.29599	0.00014541	491.28161546369995	61.09	0.49357	60.876	60.531	61.024	-0.21339					24	12	3	0	0	0	0.024447	1	7020	7020		40.778	11.629	1	181680	+		50141	34718	34887	34940	55539	55539					0.05667008296381937
LVRPPPPLSS	10	Unmodified	_LVRPPPPLSS_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8204345703125	2	531.818941	1061.62333	5.3714	0.0028566	-2.0876	-0.0011102	3.2837	0.0017463	531.8176283793784	16.878	0.49167	16.624	16.48	16.971	-0.25378					31	13	3	0	0	0	1.0271	1	98	98		42.396	1.8235	1	381360			50142	8154	34888	34941	55540	55540					0.09498308748334239
LVRPQLQPL	9	Unmodified	_LVRPQLQPL_					0	0	0			REV__ENST00000421413.6_1_6:133646543-133785920:+|nuORF	REV__ENST00000421413.6_1_6:133646543-133785920:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7681884765625	2	532.334759	1062.65496	-1.0693	-0.00056923	0.85452	0.00045489	-0.2148	-0.00011434	532.3350505236966	24.558	0.71113	24.558	24.253	24.964	0					32	15	3	0	0	0	0.024412	1	1117	1117		31.955	0	1	243970	+		50143	32178	34889	34942	55541	55541					0.12614301502276248
LVRPSAPQ	8	Unmodified	_LVRPSAPQ_					0	0	0			REV__ENST00000473133.1_1_7:31023742-31032789:+|nuORF	REV__ENST00000473133.1_1_7:31023742-31032789:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7798767089844	2	434.255977	866.497401	-0.33178	-0.00014408	0.94012	0.00040825	0.60834	0.00026417	434.25621240316815	40.829	0.8009	40.693	40.454	41.255	-0.13553					37	20	3	0	0	0	0.027866	1	3565	3565		34.173	7.3764	1	342610	+		50144	33225	34890	34943	55542	55542					0.05881221962897598
LVRRAPQP	8	Unmodified	_LVRRAPQP_					0	0	0		ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.75054931640625	2	468.790518	935.566484	-0.28101	-0.00013174	0.47022	0.00022043	0.18921	8.8698E-05	468.79038126875764	30.146	0.98792	30.154	29.88	30.868	0.0086708					29	23	2	0	0	0	0.027866	1	1929	1929		30.504	0	1	80046			50145	6875	34891	34944	55543	55543					0.09612305982454927
LVRRAPQP	8	Unmodified	_LVRRAPQP_					0	0	0		ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.790518	935.566484	-1.0804	-0.00050648	1.0399	0.00048748	-0.040517	-1.8994E-05	468.79080061512457	30.126	0.44595	30.126	29.855	30.3	0	0.030692	0.00045153	NaN	37.159	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112260			50146	6875	34891	34944							0.09612305982454927
LVRRAPQP	8	Unmodified	_LVRRAPQP_					0	0	0		ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	468.790518	935.566484	-0.45874	-0.00021505	0.3074	0.00014411	-0.15134	-7.0946E-05	468.7903760344056	29.927	0.40897	30.005	29.724	30.133	0.078344	-0.089998	-0.00023522	NaN	37.159	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113560			50147	6875	34891	34944							0.09612305982454927
LVRRGPGG	8	Unmodified	_LVRRGPGG_					0	0	0		ENST00000471008.5_1_6:30029301-30029535:+|nuORF	ENST00000471008.5_1_6:30029301-30029535:+|nuORF	ENST00000471008.5_1_6:30029301-30029535:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.24859619140625	2	406.248486	810.48242	0.98045	0.00039831	-0.66778	-0.00027128	0.31267	0.00012702	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0574	1	11109	11109		21.702	2.3424	1	123310000			50148	14947	34892	34945	55544	55544					0.06959774885569914
LVRRGSLQS	9	Unmodified	_LVRRGSLQS_					0	0	0			REV__nc|ENSG00000068079|P80217-2|IFI35	REV__nc|ENSG00000068079|P80217-2|IFI35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.78363037109375	2	508.30399	1014.59343	0.18098	9.1995E-05	2.8443	0.0014458	3.0253	0.0015378	508.3066830603648	23.882	0.26669	23.667	23.599	23.866	-0.2151					7	5	2	0	0	0	0.024495	1	1015	1015		26.693	3.6504	1	37545	+		50149	36466	34893	34946	55545	55545					0.08671369803005291
LVRRGSLQS	9	Unmodified	_LVRRGSLQS_					0	0	0			REV__nc|ENSG00000068079|P80217-2|IFI35	REV__nc|ENSG00000068079|P80217-2|IFI35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2821960449219	2	508.30399	1014.59343	-0.45842	-0.00023302	-2.5876	-0.0013153	-3.0461	-0.0015483	508.3031973337985	23.403	0.40676	23.223	23.112	23.519	-0.17989					17	9	3	0	0	0	0.02435	1	939	939		51.335	10.557	1	237720	+		50150	36466	34893	34946	55546	55546					0.08671369803005291
LVRRNRKAE	9	Unmodified	_LVRRNRKAE_					0	0	0			REV__ENST00000439964.1_1_2:64871847-64873778:+|nuORF	REV__ENST00000439964.1_1_2:64871847-64873778:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2731323242188	2	571.349263	1140.68397	0.77649	0.00044365	-2.9901	-0.0017084	-2.2136	-0.0012648	571.8496039976484	86.048	0.26148	85.906	85.798	86.059	-0.14217					6	5	2	0	0	0	0.024323	1	10465	10465		44.117	0	1	21667	+		50151	32518	34894	34947	55547	55547					0.11925838851266235
LVRRPAQP	8	Unmodified	_LVRRPAQP_					0	0	0			REV__ENST00000566304.5_2_15:72636374-72636443:-|nuORF	REV__ENST00000566304.5_2_15:72636374-72636443:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7505187988281	2	468.790518	935.566484	-0.27538	-0.0001291	0.20762	9.7329E-05	-0.067766	-3.1768E-05	468.79054656797126	30.227	0.33193	30.302	30.129	30.461	0.074314					17	7	3	0	0	0	0.027866	1	1849	1849		40.573	8.6178	1	111960	+		50152	35299	34895	34948	55548	55548					0.09612305982454927
LVRRPTGN	8	Unmodified	_LVRRPTGN_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7720642089844	2	456.772326	911.530098	0.57232	0.00026142	-0.83883	-0.00038315	-0.26651	-0.00012173	456.77180226295417	89.123	1.793	89.139	88.45	90.243	0.015907					92	42	4	0	0	0	1.0239	1	11185	11185		33.516	0	1	3375300			50153	2480;18139	34896	34949	55549	55549					0.07079429085752054
LVRRPTGN	8	Unmodified	_LVRRPTGN_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.7721252441406	2	456.772326	911.530098	0.23368	0.00010674	-0.52507	-0.00023984	-0.29139	-0.0001331	456.77201428085914	89.216	1.5163	89.079	88.482	89.998	-0.13761					87	35	5	0	0	0	0.95679	1	10916	10916		44.117	5.3107	1	3359400			50154	2480;18139	34896	34949	55550	55550					0.07079429085752054
LVRRVPLE	8	Unmodified	_LVRRVPLE_					0	0	0		ENST00000481570.5_1_7:94052368-94052434:+|nuORF	ENST00000481570.5_1_7:94052368-94052434:+|nuORF	ENST00000481570.5_1_7:94052368-94052434:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.3135070800781	2	491.313826	980.613099	-0.25574	-0.00012565	0.10122	4.9733E-05	-0.15452	-7.5918E-05	491.3136987164297	22.049	0.61735	21.858	21.613	22.23	-0.19072					33	12	4	0	0	0	0.96719	1	744	744		42.474	0	1	622150			50155	15233	34897	34950	55551	55551					0.12201745813752041
LVRTVSHKWL	10	Unmodified	_LVRTVSHKWL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2145080566406	3	413.583785	1237.72953	0.42683	0.00017653	-2.9569	-0.0012229	-2.5301	-0.0010464	413.5823099008885	24.59	0.45885	24.668	24.455	24.914	0.078344					16	9	2	0	0	0	0.03519	1	1019	1019		25.126	1.7481	1	49831	+		50156	20082	34898	34951	55552	55552					0.1201706431365892
LVRVERLL	8	Unmodified	_LVRVERLL_					0	0	0			REV__ENST00000588207.1_1_18:57636769-57637372:+|nuORF	REV__ENST00000588207.1_1_18:57636769-57637372:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.319091796875	2	499.329476	996.6444	-0.13184	-6.5834E-05	-0.14404	-7.1923E-05	-0.27588	-0.00013776	499.3291695996919	42.089	0.73732	41.966	41.68	42.417	-0.12299					36	19	3	0	0	0	0.027866	1	3818	3818		7.6903	0	1	312220	+		50157	35645	34899	34952	55553	55553					0.1459431884784408
LVRVGVREA	9	Unmodified	_LVRVGVREA_					0	0	0		ENST00000520655.5_1_8:42128987-42129218:+|nuORF	ENST00000520655.5_1_8:42128987-42129218:+|nuORF	ENST00000520655.5_1_8:42128987-42129218:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7672119140625	2	499.808908	997.603263	0.33575	0.00016781	-1.6512	-0.00082528	-1.3154	-0.00065747	499.80791908473975	40.181	0.602	40.181	39.879	40.481	0					41	16	4	0	0	0	0.024523	1	3563	3563		21.96	3.6355	1	363220			50158	15989	34900	34953	55554	55554					0.10436557808372982
LVRVLVLVC	9	Unmodified	_LVRVLVLVC_					0	0	0		ENST00000528797.5_1_11:57414176-57414477:-|nuORF	ENST00000528797.5_1_11:57414176-57414477:-|nuORF	ENST00000528797.5_1_11:57414176-57414477:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3332824707031	2	507.33063	1012.64671	3.2928	0.0016706	0.65275	0.00033116	3.9456	0.0020017	507.33077030164236	18.228	0.39871	17.985	17.776	18.175	-0.24256					11	7	2	0	0	0	0.96121	1	257	257		28.254	6.2944	1	60057			50159	16189	34901	34954	55555	55555					0.1408903126127825
LVRVTVLVT	9	Unmodified	_LVRVTVLVT_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7947998046875	2	500.331685	998.648816	-0.82296	-0.00041175	3.0875	0.0015448	2.2646	0.001133	500.8346217209787	82.727	0.17417	82.587	82.434	82.608	-0.14014					5	3	2	0	0	0	0.024477	1	9958	9958		27.882	0	1	21221	+		50160	24260	34902	34955	55556	55556					0.1494378327075765
LVRWIPAL	8	Unmodified	_LVRWIPAL_					0	0	0		ENST00000592414.1_1_19:3053561-3053795:-|nuORF	ENST00000592414.1_1_19:3053561-3053795:-|nuORF	ENST00000592414.1_1_19:3053561-3053795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.3056945800781	2	484.308013	966.601472	-0.97527	-0.00047233	-3.8153	-0.0018478	-4.7906	-0.0023201	484.3060247578424	30.488	0.66314	30.562	30.254	30.917	0.074314					38	15	3	0	0	0	1.0239	1	1904	1904		33.516	0.022601	1	1748600			50161	17370	34903	34956	55557	55557					0.11683548790404075
LVSADVFGGTP	11	Unmodified	_LVSADVFGGTP_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400-SFSWAP|1|fusion	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7849731445312	2	531.776939	1061.53933	-0.2367	-0.00012587	2.2204	0.0011808	1.9837	0.0010549	531.7779343822554	57.205	0.58269	56.98	56.738	57.321	-0.2248					21	15	2	0	0	0	0.024752	1	6201	6201		32.812	4.5581	1	2276200	+		50162	27576;35996	34904	34957	55558	55558					0.011017328607522359
LVSAPPHPSL	10	Unmodified	_LVSAPPHPSL_					0	0	0		ENST00000540525.1_3_12:67663742-67663883:+|nuORF	ENST00000540525.1_3_12:67663742-67663883:+|nuORF	ENST00000540525.1_3_12:67663742-67663883:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.32611083984375	2	509.290017	1016.56548	-0.22394	-0.00011405	2.506	0.0012763	2.2821	0.0011622	509.2909790403377	78.155	0.50726	77.893	77.612	78.119	-0.26202					14	11	2	0	0	0	0.03519	1	9297	9297		49.442	0	1	112560			50163	16424	34905	34958	55559	55559					0.05786046822890967
LVSASSVLMI	10	Unmodified	_LVSASSVLMI_					0	0	0			REV__ENST00000444619.5_1_3:11314106-11323928:+|nuORF	REV__ENST00000444619.5_1_3:11314106-11323928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7970886230469	2	510.293911	1018.57327	-0.18063	-9.2175E-05	1.2697	0.0006479	1.089	0.00055572	510.7944534754822	61.094	0.92258	60.888	60.378	61.301	-0.20599					51	22	4	0	0	0	1.0142	1	6831	6831		44.117	1.6423	1	1000800	+		50164	32597	34906	34959	55560	55560					0.06472438028151828
LVSASSVLMI	10	Unmodified	_LVSASSVLMI_					0	0	0			REV__ENST00000444619.5_1_3:11314106-11323928:+|nuORF	REV__ENST00000444619.5_1_3:11314106-11323928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.79718017578125	2	510.293911	1018.57327	-1.0707	-0.00054638	2.4912	0.0012712	1.4205	0.00072485	510.7945025097968	60.963	0.88898	60.787	60.483	61.372	-0.1761					52	21	4	0	0	0	0.75995	1	6818	6818		63.306	20.832	1	942970	+		50165	32597	34906	34959	55561	55561					0.06472438028151828
LVSASSVLMI	10	Unmodified	_LVSASSVLMI_					0	0	0			REV__ENST00000444619.5_1_3:11314106-11323928:+|nuORF	REV__ENST00000444619.5_1_3:11314106-11323928:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	510.293911	1018.57327	-0.18063	-9.2175E-05	1.2697	0.0006479	1.089	0.00055572	510.7944534754822	61.094	0.92258	60.888	60.378	61.301	-0.20599	0.028211	-0.00069922	NaN	63.306	51	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1000800	+		50166	32597	34906	34959							0.06472438028151828
LVSATRQIN	9	Unmodified	_LVSATRQIN_					0	0	0			REV__ENST00000533836.1_1_1:52522019-52536962:+|nuORF	REV__ENST00000533836.1_1_1:52522019-52536962:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2914733886719	2	501.290548	1000.56654	-0.55827	-0.00027985	0.45222	0.00022669	-0.10605	-5.3163E-05	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.70156	1	10436	10436		45.972	1.5951	1	2156900	+		50167	34622	34907	34960	55562	55562					0.06628261191781348
LVSDGDPTVGE	11	Unmodified	_LVSDGDPTVGE_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.782470703125	2	544.758943	1087.50333	-1.2855	-0.00070029	1.4271	0.00077745	0.14164	7.7161E-05	544.7597173300437	38.694	0.24603	38.694	38.515	38.761	0					7	5	2	0	0	0	0.024759	1	3241	3241		51.335	17.163	1	37365		+	50168	6216	34908	34961	55563	55563					-0.03691769106740139
LVSEGSSGQKV	11	Unmodified	_LVSEGSSGQKV_					0	0	0		ENST00000406875.7_1_7:139255655-139255937:-|nuORF	ENST00000406875.7_1_7:139255655-139255937:-|nuORF	ENST00000406875.7_1_7:139255655-139255937:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.8111572265625	2	545.790578	1089.5666	-0.9559	-0.00052172	0.22711	0.00012395	-0.72879	-0.00039777	546.2933338540917	91.295	0.20762	91.282	91.197	91.405	-0.012383					6	4	2	0	0	0	0.024756	1	11539	11539		44.377	3.599	1	120760			50169	13739	34909	34962	55564	55564					0.0254021640114388
LVSELVCQTV	10	Unmodified	_LVSELVCQTV_					0	0	0			REV__nc|ENSG00000262246|P57737-2|CORO7	REV__nc|ENSG00000262246|P57737-2|CORO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.811279296875	2	545.794275	1089.574	-0.97657	-0.00053301	2.8724	0.0015677	1.8958	0.0010347	545.7955678483366	91.55	0.59825	91.538	91.321	91.92	-0.012383					16	13	2	0	0	0	0.03519	1	11548	11548		87.696	15.819	1	76023	+		50170	29121	34910	34963	55565	55565					0.03279232677186883
LVSELVCQTV	10	Unmodified	_LVSELVCQTV_					0	0	0			REV__nc|ENSG00000262246|P57737-2|CORO7	REV__nc|ENSG00000262246|P57737-2|CORO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.8106689453125	2	545.794275	1089.574	-0.34715	-0.00018947	1.8651	0.0010179	1.5179	0.00082846	545.7950290184243	91.647	0.55864	91.657	91.4	91.959	0.0094147					16	12	2	0	0	0	0.03519	1	11538	11538		98.629	24.374	1	75213	+		50171	29121	34910	34963	55566	55566					0.03279232677186883
LVSEVSLEV	9	Unmodified	_LVSEVSLEV_					0	0	0			REV__nc|ENSG00000169347|P55259-4|GP2	REV__nc|ENSG00000169347|P55259-4|GP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2872009277344	2	487.773865	973.533177	0.77837	0.00037967	1.6445	0.00080216	2.4229	0.0011818	487.77412166153067	37.371	0.55406	37.371	37.005	37.559	0					24	14	2	0	0	0	0.024436	1	3012	3012		38.806	8.9646	1	128750	+		50172	26358	34911	34964	55567	55567					0.04535214629231632
LVSFFIVI	8	Unmodified	_LVSFFIVI_					0	0	0			REV__ENST00000529484.5_1_11:117061404-117064733:+|nuORF	REV__ENST00000529484.5_1_11:117061404-117064733:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.2892761230469	2	469.291497	936.568441	-0.54472	-0.00025563	-3.9957	-0.0018751	-4.5404	-0.0021308	469.28940218809146	48.758	0.87405	48.576	48.126	49	-0.18206					54	23	4	0	0	0	0.71717	1	4866	4866		65.897	0	1	2851600	+		50173	24688	34912	34965	55568	55568					0.09761921947699648
LVSFVLEIV	9	Unmodified	_LVSFVLEIV_					0	0	0			REV__ENSG00000196832|ENST00000641879|OR11G2	REV__ENSG00000196832|ENST00000641879|OR11G2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8123779296875	2	509.812793	1017.61103	-0.02137	-1.0895E-05	0.045963	2.3432E-05	0.024593	1.2538E-05	509.81265950198656	104.28	1.2317	104.28	103.98	105.21	-0.0032196					92	35	4	0	0	0	0.59099	1	13339	13339		53.351	3.3269	1	1365200	+		50174	28227	34913	34966	55569	55569					0.10293272285275634
LVSGKSLGSH	10	Unmodified	_LVSGKSLGSH_					0	0	0			REV__ENSG00000104129|ENST00000220496|DNAJC17	REV__ENSG00000104129|ENST00000220496|DNAJC17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7772521972656	2	492.777274	983.539994	-0.85556	-0.0004216	0.78531	0.00038698	-0.070256	-3.4621E-05	492.7775408736764	46.547	0.99136	46.394	46.061	47.052	-0.15301					76	26	4	0	0	0	0.71272	1	4597	4597		66.429	0	1	6364200	+		50175	21419	34914	34967	55570	55570					0.04756572300482276
LVSKISLLP	9	Unmodified	_LVSKISLLP_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2979736328125	2	485.320786	968.627018	-0.34304	-0.00016649	0.99524	0.00048301	0.6522	0.00031653	485.32091977155585	66.636	0.98898	66.636	66.461	67.45	0					30	24	2	0	0	0	0.024418	1	8039	8039		54.776	12.38	1	1100200			50176	12361	34915	34968	55571	55571					0.1414497852219938
LVSKISLLS	9	Unmodified	_LVSKISLLS_					0	0	0		ENST00000484919.5_1_8:67405883-67422509:+|nuORF	ENST00000484919.5_1_8:67405883-67422509:+|nuORF	ENST00000484919.5_1_8:67405883-67422509:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.77154541015625	2	480.310418	958.606283	2.0493	0.00098429	-2.2305	-0.0010714	-0.18126	-8.7063E-05	480.3092289891137	74.389	0.86333	74.389	74.172	75.036	0					31	20	2	0	0	0	0.024457	1	9154	9154		29.15	1.2673	1	236860			50177	15317	34916	34969	55572	55572					0.12532388142540185
LVSKYRMP	8	Unmodified	_LVSKYRMP_					0	0	0		ENST00000531134.5_1_12:32638934-32717140:+|nuORF	ENST00000531134.5_1_12:32638934-32717140:+|nuORF	ENST00000531134.5_1_12:32638934-32717140:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2971496582031	2	497.281137	992.547722	0.084475	4.2008E-05	-1.9838	-0.00098651	-1.8993	-0.0009445	497.27921343484627	70.849	0.42009	70.859	70.593	71.013	0.010735					15	9	2	0	0	0	0.027866	1	8454	8454		42.474	5.446	1	164640			50178	16252	34917	34970	55573	55573					0.051150082963886234
LVSLETPLV	9	Unmodified	_LVSLETPLV_					0	0	0		ENST00000582574.1_1_17:46126164-46128055:+|nuORF	ENST00000582574.1_1_17:46126164-46128055:+|nuORF	ENST00000582574.1_1_17:46126164-46128055:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.8057861328125	2	485.794601	969.574648	-1.272	-0.00061791	-2.4846	-0.001207	-3.7566	-0.0018249	485.79300685241947	34.343	0.26526	34.394	34.213	34.479	0.050251					11	6	2	0	0	0	0.024262	1	2497	2497		47.916	0	1	91582			50179	17181	34918	34971	55574	55574					0.08864395388570756
LVSLHLYN	8	Unmodified	_LVSLHLYN_					0	0	0			REV__ENSG00000125730|ENST00000245907|C3	REV__ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.77154541015625	2	479.77146	957.528367	1.1288	0.00054155	-1.202	-0.00057669	-0.073238	-3.5137E-05	479.77082696843894	74.734	1.2646	74.734	74.042	75.307	0					83	30	5	0	0	0	0.65272	2	9154	9142;9154		71.378	15.874	1	8505600	+		50180	22835	34919	34972	55575;55576	55576					0.04790375277127623
LVSLHLYN	8	Unmodified	_LVSLHLYN_					0	0	0			REV__ENSG00000125730|ENST00000245907|C3	REV__ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.771240234375	2	479.77146	957.528367	-0.30218	-0.00014498	0.098582	4.7297E-05	-0.2036	-9.7682E-05	479.77146013576436	74.783	1.3393	74.794	74.095	75.435	0.010376					91	32	5	0	0	0	0.91239	1	9071	9071		50.025	12.865	1	7925300	+		50181	22835	34919	34972	55577	55577					0.04790375277127623
LVSLKDKK	8	Unmodified	_LVSLKDKK_					0	0	0		ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant;ENSG00000168916|ENST00000513986|ZNF608;nc|ENSG00000168916|Q9ULD9-2|ZNF608	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.9007263183594	2	465.80276	929.590967	0.91834	0.00042776	-0.83821	-0.00039044	0.080132	3.7326E-05	465.802296980764	20.457	0.49359	20.261	20.04	20.533	-0.19577					16	9	2	0	0	0	0.027866	1	531	531		21.96	0	1	128070			50182	38201	34920	34973	55578	55578					0.12335521345312372
LVSLLYSF	8	Unmodified	_LVSLLYSF_					0	0	0			REV__ENST00000355610.8_1_X:106184550-106184712:-|nuORF	REV__ENST00000355610.8_1_X:106184550-106184712:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.78515625	2	471.270761	940.52697	1.0569	0.00049809	-3.8138	-0.0017973	-2.7569	-0.0012992	471.2687213092641	54.477	0.44127	54.575	54.328	54.769	0.098015					16	12	2	0	0	0	0.027866	1	5888	5888		21.702	0	1	344230	+		50183	30778	34921	34974	55579	55579					0.054327411883718923
LVSLQNTSH	9	Unmodified	_LVSLQNTSH_					0	0	0		RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3134765625	2	499.766906	997.519259	0.19963	9.977E-05	-2.3435	-0.0011712	-2.1438	-0.0010714	499.76548050944945	76.576	0.57152	76.576	76.268	76.84	0					30	13	3	0	0	0	0.023417	1	9460	9460		58.782	0	1	1719500			50184	19030	34922	34975	55580	55580					0.020399819208023473
LVSLQNTSH	9	Unmodified	_LVSLQNTSH_					0	0	0		RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3130187988281	2	499.766906	997.519259	-0.46952	-0.00023465	-1.7394	-0.0008693	-2.2089	-0.001104	499.7657959438775	76.773	0.5736	76.545	76.239	76.813	-0.22843					30	13	3	0	0	0	0.024021	1	9441	9441		58.782	15.918	1	1520500			50185	19030	34922	34975	55581	55581					0.020399819208023473
LVSLQNTSH	9	Unmodified	_LVSLQNTSH_					0	0	0		RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	RASGRP3|p.A346T|1|0.21|ENSG00000152689|chr2:33527365-33527365|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.31317138671875	2	499.766906	997.519259	0.34256	0.0001712	-2.4098	-0.0012043	-2.0673	-0.0010331	499.7653515541047	76.567	0.69138	76.579	76.166	76.857	0.011635					38	16	3	0	0	0	0.023417	1	9353	9353		79.451	2.6044	1	1683900			50186	19030	34922	34975	55582	55582					0.020399819208023473
LVSLSRKK	8	Unmodified	_LVSLSRKK_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.8079528808594	2	465.808377	929.6022	-1.5494	-0.00072172	1.3887	0.00064689	-0.16065	-7.4832E-05	465.8089086366975	21.404	0.58504	21.191	20.921	21.506	-0.2128					31	11	4	0	0	0	1.0574	1	654	654		16.473	1.6083	1	571960			50187	5169	34923	34976	55583	55583					0.1345834343945853
LVSMCKKLDA	10	Unmodified	_LVSMCKKLDA_					0	0	0			REV__nc|ENSG00000198000|Q76FK4-4|NOL8	REV__nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.2996826171875	2	554.29867	1106.58279	0.75301	0.00041739	3.5451	0.0019651	4.2981	0.0023824	554.3003591379683	77.298	1.0743	77.056	76.792	77.866	-0.24232					48	26	3	0	0	0	0.40067	1	9210	9210		98.629	5.4339	1	1523100	+		50188	28371	34924	34977	55584	55584					0.033758830420310915
LVSMCVEYV	9	Carbamidomethyl (C),Oxidation (M)	_LVSM(Oxidation (M))C(Carbamidomethyl (C))VEYV_	LVSMC(1)VEYV	LVSM(1)CVEYV	LVSMC(77)VEYV	LVSM(77)CVEYV	0	1	1		ENSG00000138449|ENST00000261024|SLC40A1	ENSG00000138449|ENST00000261024|SLC40A1	ENSG00000138449|ENST00000261024|SLC40A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2596435546875	2	558.25921	1114.50387	0.55882	0.00031197	-0.66155	-0.00036932	-0.10273	-5.7351E-05	558.2590178270653	79.585	1.5747	79.339	78.947	80.522	-0.2465					97	37	6	0	0	0	0.29104	1	9517	9517		76.847	8.3619	1	7994800			50189	5245	34925	34978	55585	55585	69	215			-0.0488038898290597
LVSMPFCQSSL	11	Unmodified	_LVSMPFCQSSL_					0	0	0			REV__nc|ENSG00000176925|Q8NH61|OR51F2	REV__nc|ENSG00000176925|Q8NH61|OR51F2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.57061767578125	3	404.531482	1210.57262	1.1966	0.00048407	2.5191	0.001019	3.7157	0.0015031	404.53243117608594	30.462	1.927	30.536	29.406	31.333	0.074314					81	46	2	0	0	0	0.024751	1	1813	1813		41.08	25.747	1	134990	+		50190	36969	34926	34979	55586	55586					-0.024247246831919256
LVSQSFSLL	9	Unmodified	_LVSQSFSLL_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7557678222656	2	497.2844	992.554247	0.39461	0.00019623	-0.30467	-0.00015151	0.089938	4.4725E-05	497.2840415457171	67.485	0.89714	67.485	67.205	68.102	0					55	22	4	0	0	0	0.024292	1	8064	8064		58.782	5.4305	1	894480	+		50191	25956	34927	34980	55587	55587					0.057672247287769096
LVSQSFSLL	9	Unmodified	_LVSQSFSLL_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.2844	992.554247	0.052751	2.6232E-05	-0.098676	-4.907E-05	-0.045926	-2.2838E-05	497.2842457773453	67.86	0.71017	67.572	67.307	68.017	-0.28834	0.0111	0.00011643	NaN	58.782	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	996900	+		50192	25956	34927	34980							0.057672247287769096
LVSQSFSLL	9	Unmodified	_LVSQSFSLL_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.2844	992.554247	0.33363	0.00016591	-0.29774	-0.00014806	0.035889	1.7847E-05	497.2841033977082	67.601	0.93187	67.624	67.191	68.123	0.023911	0.063995	-8.1553E-05	NaN	58.782	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	957220	+		50193	25956	34927	34980							0.057672247287769096
LVSRLVCLE	9	Unmodified	_LVSRLVCLE_					0	0	0		ENST00000522362.6_1_8:26363853-26363976:-|nuORF	ENST00000522362.6_1_8:26363853-26363976:-|nuORF	ENST00000522362.6_1_8:26363853-26363976:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7481689453125	2	516.299527	1030.5845	-0.059595	-3.0769E-05	-4.1572	-0.0021463	-4.2168	-0.0021771	516.2969390184411	63.453	0.42739	63.261	63.029	63.456	-0.19243					14	10	2	0	0	0	0.024495	1	7196	7196		26.693	1.1189	1	331810			50194	16024	34928	34981	55588	55588					0.0704326012232741
LVSRSLLGRGR	11	Unmodified	_LVSRSLLGRGR_					0	0	0			REV__ENSG00000163510|ENST00000410053|CWC22	REV__ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	607.3770751953125	2	607.37802	1212.74149	-0.30953	-0.000188	-0.54674	-0.00033208	-0.85627	-0.00052008	607.3775916140798	97.678	0.73053	97.676	97.367	98.097	-0.0020752					30	16	2	0	0	0	1.0075	1	12383	12383		35.152	3.5178	1	272430	+		50195	25579	34929	34982	55589	55589					0.14362681056832116
LVSRVPQLW	9	Unmodified	_LVSRVPQLW_					0	0	0		ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.3263549804688	2	549.326934	1096.63931	-0.2303	-0.00012651	-0.25452	-0.00013981	-0.48482	-0.00026633	549.3266754298367	69.012	0.86037	68.782	68.357	69.217	-0.23048					49	20	4	0	0	0	0.16468	1	7987	7987		96.19	11.275	1	1534900			50196	15269	34930	34983	55590	55590					0.09486014985213842
LVSRVPQLW	9	Unmodified	_LVSRVPQLW_					0	0	0		ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	549.326934	1096.63931	-0.58184	-0.00031962	0.74622	0.00040992	0.16439	9.0301E-05	549.3271800083317	68.959	0.83482	68.959	68.754	69.588	0	0.051942	0.00063737	NaN	96.19	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1245000			50197	15269	34930	34983							0.09486014985213842
LVSRVPQLW	9	Unmodified	_LVSRVPQLW_					0	0	0		ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	549.326934	1096.63931	-0.10484	-5.7589E-05	0.37255	0.00020465	0.26771	0.00014706	549.3270039841865	69.245	0.84403	68.952	68.789	69.633	-0.29291	0.045212	0.00022683	NaN	96.19	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487100			50198	15269	34930	34983							0.09486014985213842
LVSRVPQLW	9	Unmodified	_LVSRVPQLW_					0	0	0		ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.326934	1096.63931	-0.74065	-0.00040686	0.94915	0.00052139	0.2085	0.00011453	549.3273537906504	69.036	0.64021	69.051	68.865	69.505	0.015121	0.14418	0.00086031	NaN	96.19	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1381100			50199	15269	34930	34983							0.09486014985213842
LVSRVPQLW	9	Unmodified	_LVSRVPQLW_					0	0	0		ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	549.326934	1096.63931	-0.95342	-0.00052374	0.44459	0.00024423	-0.50883	-0.00027951	549.3270856570413	69.116	0.66608	68.854	68.586	69.252	-0.26166	-0.052876	0.00030598	NaN	96.19	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307100			50200	15269	34930	34983							0.09486014985213842
LVSSGQALL	9	Unmodified	_LVSSGQALL_					0	0	0		ENSG00000154654|ENST00000400546|NCAM2;NCAM2|p.L78*|1|0.18|ENSG00000154654|chr21:21284293-21284293|G/-|frameshift_variant	ENSG00000154654|ENST00000400546|NCAM2	ENSG00000154654|ENST00000400546|NCAM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	444.2629089355469	2	444.263468	886.512382	-0.1161	-5.1579E-05	0.016297	7.2401E-06	-0.099804	-4.4339E-05	444.26333966647326	72.79	0.98338	72.79	72.454	73.438	0					44	24	3	0	0	0	0.17455	1	8865	8865		94.006	3.2298	1	974400			50201	6424	34931	34984	55591	55591					0.06458669040239329
LVSSGQALL	9	Unmodified	_LVSSGQALL_					0	0	0		ENSG00000154654|ENST00000400546|NCAM2;NCAM2|p.L78*|1|0.18|ENSG00000154654|chr21:21284293-21284293|G/-|frameshift_variant	ENSG00000154654|ENST00000400546|NCAM2	ENSG00000154654|ENST00000400546|NCAM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	444.263468	886.512382	0.45858	0.00020373	-0.30025	-0.00013339	0.15833	7.034E-05	444.2632159406362	73.105	0.64663	72.826	72.55	73.197	-0.27834	0.02074	-0.00010993	NaN	94.006	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100200			50202	6424	34931	34984							0.06458669040239329
LVSSRRGGP	9	Unmodified	_LVSSRRGGP_					0	0	0			REV__ENST00000444115.5_1_3:48542125-48542245:-|nuORF	REV__ENST00000444115.5_1_3:48542125-48542245:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7712707519531	2	464.769783	927.525013	-0.059602	-2.7701E-05	4.31	0.0020032	4.2504	0.0019755	464.7715479926418	34.568	1.2974	34.619	34.367	35.664	0.050255					73	33	4	0	0	0	0.67308	1	2546	2546		47.916	1.9636	1	1486300	+		50203	32585	34932	34985	55592	55592					0.05835125223143223
LVSTKGLGSV	10	Unmodified	_LVSTKGLGSV_					0	0	0			REV__ENSG00000119698|ENST00000304338|PPP4R4	REV__ENSG00000119698|ENST00000304338|PPP4R4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75018310546875	2	480.78985	959.565146	-1.1247	-0.00054073	-3.9616	-0.0019047	-5.0863	-0.0024454	480.78733223122106	30.077	0.37534	30.151	29.879	30.254	0.074316					12	8	2	0	0	0	0.03519	1	1841	1841		44.377	25.017	1	42884	+		50204	22479	34933	34986	55593	55593					0.0837462710304635
LVSVGKNINV	10	Unmodified	_LVSVGKNINV_					0	0	0			REV__ENSG00000205327|ENST00000548615|OR6C68	REV__ENSG00000205327|ENST00000548615|OR6C68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7313842773438	2	521.816399	1041.61824	-0.59978	-0.00031297	0.55203	0.00028806	-0.047746	-2.4915E-05	521.816639267869	38.164	0.36141	37.943	37.724	38.085	-0.22149					19	10	2	0	0	0	0.03519	1	3121	3121		14.865	0	1	221500	+		50205	28671	34934	34987	55594	55594					0.09910004885705348
LVSVPLRMF	9	Unmodified	_LVSVPLRMF_					0	0	0		ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540219-145541001:-|nuORF	ENSG00000185000|ENST00000528718|DGAT1	ENSG00000185000|ENST00000528718|DGAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.29248046875	2	531.312438	1060.61032	-0.59042	-0.0003137	-4.2232	-0.0022438	-4.8136	-0.0025575	531.309677405157	29.96	0.33619	29.716	29.568	29.905	-0.24415					11	7	2	0	0	0	0.024466	1	1862	1862		33.516	17.874	1	71191			50206	9394	34935	34988	55595	55595					0.08244154364570022
LVSVQKQLS	9	Unmodified	_LVSVQKQLS_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.28192138671875	2	501.303124	1000.5917	-0.45236	-0.00022677	-3.4398	-0.0017244	-3.8921	-0.0019511	501.8035120307095	57.859	0.28349	57.95	57.835	58.118	0.091217					12	7	3	0	0	0	0.024511	1	6437	6437		19.104	0	1	181840	+		50207	19207	34936	34989	55596	55596					0.09142315994370165
LVSWQSSPL	9	Unmodified	_LVSWQSSPL_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7519836425781	2	508.7742	1015.53385	0.0258	1.3126E-05	-4.3694	-0.0022231	-4.3436	-0.0022099	508.7715571880717	43.571	0.58309	43.602	43.229	43.812	0.030827					25	15	2	0	0	0	0.023007	1	4032	4032		76.774	7.1465	1	698320	+		50208	27624	34937	34990	55597	55597					0.02670054068948957
LVTALLMMF	9	Unmodified	_LVTALLMMF_					0	0	0			REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7897338867188	2	519.789949	1037.56535	0.022122	1.1499E-05	0.073639	3.8277E-05	0.095761	4.9776E-05	519.7899080531224	52.617	0.60674	52.427	52.147	52.754	-0.18981					33	14	3	0	0	0	0.75282	1	5467	5467		42.474	0.078325	1	824960	+		50209	27092	34938	34991	55598	55598					0.04806587507027871
LVTALLMMF	9	Unmodified	_LVTALLMMF_					0	0	0			REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.789949	1037.56535	-0.6597	-0.0003429	0.72054	0.00037453	0.060844	3.1626E-05	519.7901994600643	52.508	0.82259	52.387	51.937	52.759	-0.12077	-0.065667	0.0004604	NaN	42.474	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	796430	+		50210	27092	34938	34991							0.04806587507027871
LVTALLMMF	9	Unmodified	_LVTALLMMF_					0	0	0			REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.789949	1037.56535	0.46759	0.00024305	-0.039702	-2.0637E-05	0.42789	0.00022241	519.789966968538	52.803	1.2718	52.544	52.173	53.444	-0.25838	0.09133	-0.00032993	NaN	42.474	44	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	844060	+		50211	27092	34938	34991							0.04806587507027871
LVTALLMMF	9	Unmodified	_LVTALLMMF_					0	0	0			REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	519.789949	1037.56535	0.022122	1.1499E-05	0.073639	3.8277E-05	0.095761	4.9776E-05	519.7899080531224	52.617	0.60674	52.427	52.147	52.754	-0.18981	-0.025663	-0.00021211	NaN	42.474	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824960	+		50212	27092	34938	34991							0.04806587507027871
LVTARRET	8	Unmodified	_LVTARRET_					0	0	0			REV__nc|ENSG00000168398|P30411-2|BDKRB2	REV__nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.27978515625	2	473.277441	944.540328	-0.33477	-0.00015844	4.4236	0.0020936	4.0889	0.0019352	473.2795114874338	55.042	0.90105	54.896	54.495	55.396	-0.14609					64	24	5	0	0	0	0.81662	2	5894	5882;5894		57.811	3.5442	1	2435700	+		50213	26256	34939	34992	55599;55600	55600					0.06583992020318874
LVTCTLDQT	9	Unmodified	_LVTCTLDQT_					0	0	0			REV__nc|nan|Q8N6V4-4|C10orf53	REV__nc|nan|Q8N6V4-4|C10orf53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7695007324219	2	497.2497	992.484847	-1.0377	-0.00051601	2.496	0.0012411	1.4583	0.00072513	497.25087380321094	25.107	0.49773	25.073	24.815	25.313	-0.034395					14	11	2	0	0	0	0.024436	1	1179	1179		23.042	0	1	68682	+		50214	37260	34940	34993	55601	55601					-0.011696022823116436
LVTDKIKLL	9	Unmodified	_LVTDKIKLL_					0	0	0			REV__ENSG00000159131|ENST00000381815|GART	REV__ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7896118164062	2	521.847167	1041.67978	0.82103	0.00042845	-0.96152	-0.00050177	-0.14049	-7.3315E-05	521.8466209717261	52.988	0.43829	52.73	52.523	52.961	-0.25838					16	10	2	0	0	0	0.024495	1	5490	5490		34.173	23.307	1	144920	+		50215	25234	34941	34994	55602	55602					0.16060936584972296
LVTEDANKL	9	Unmodified	_LVTEDANKL_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.302734375	2	501.776939	1001.53933	-0.23386	-0.00011734	1.0789	0.00054135	0.845	0.000424	502.27808505619424	24.75	0.21966	24.575	24.468	24.688	-0.17484					6	4	2	0	0	0	0.024319	1	1102	1102		39.253	0	1	28870	+		50216	22285	34942	34995	55603	55603					0.038617328607642776
LVTEKDTTF	9	Unmodified	_LVTEKDTTF_					0	0	0			REV__ENSG00000176148|ENST00000334274|TCP11L1	REV__ENSG00000176148|ENST00000334274|TCP11L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.2564086914062	2	527.276772	1052.53899	0.28334	0.0001494	-1.2871	-0.00067863	-1.0037	-0.00052923	527.7785329544568	82.156	1.2942	81.936	81.53	82.824	-0.22015					67	29	5	0	0	0	0.024292	1	9826	9826		68.787	10.005	1	1420800	+		50217	26998	34943	34996	55604	55604					0.014823131408775225
LVTEKRTV	8	Unmodified	_LVTEKRTV_					0	0	0			REV__ENST00000329378.7_2_5:93918161-93954215:-|nuORF	REV__ENST00000329378.7_2_5:93918161-93954215:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7446594238281	2	473.290017	944.565481	0.053354	2.5252E-05	-0.3422	-0.00016196	-0.28885	-0.00013671	473.2897111507558	48.823	0.53678	48.671	48.433	48.97	-0.15277					33	14	3	0	0	0	0.027866	1	5021	5021		32.812	0	1	442150	+		50218	30446	34944	34997	55605	55605					0.0909804682290769
LVTENPKIT	9	Unmodified	_LVTENPKIT_					0	0	0			REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2820129394531	2	507.795132	1013.57571	1.7346	0.0008808	-2.3477	-0.0011921	-0.61311	-0.00031134	508.29591419273044	23.829	0.22158	23.638	23.572	23.794	-0.19117					6	4	2	0	0	0	0.024323	1	966	966		53.351	0	1	46276	+		50219	26086	34945	34998	55606	55606					0.06946609757460465
LVTEQQSKI	9	Unmodified	_LVTEQQSKI_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2992553710938	2	523.298039	1044.58152	-0.60792	-0.00031812	4.0185	0.0021029	3.4106	0.0017848	523.3001095672797	76.735	1.6071	76.506	76.121	77.728	-0.22843					85	38	5	0	0	0	0.19099	1	9462	9462		90.37	12.426	1	7828000			50220	7698	34946	34999	55607	55607					0.06101708269147821
LVTFLTSA	8	Unmodified	_LVTFLTSA_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2464904785156	2	426.247286	850.48002	-0.30614	-0.00013049	-2.6187	-0.0011162	-2.9249	-0.0012467	426.2459885407312	89.374	1.5191	89.374	88.255	89.774	0					66	35	3	0	0	0	0.95417	1	11286	11286		44.531	0	1	471120	+		50221	25026	34947	35000	55608	55608					0.048798816372254805
LVTFLTSA	8	Unmodified	_LVTFLTSA_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	426.247286	850.48002	-0.30614	-0.00013049	-2.6187	-0.0011162	-2.9249	-0.0012467	426.2459885407312	89.374	1.5191	89.374	88.255	89.774	0	-0.043557	0.00033491	NaN	44.531	66	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471120	+		50222	25026	34947	35000							0.048798816372254805
LVTFLTSA	8	Unmodified	_LVTFLTSA_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.247286	850.48002	0.28568	0.00012177	-3.1291	-0.0013338	-2.8434	-0.001212	426.2458186694688	89.465	2.1645	89.444	88.737	90.901	-0.021645	0.025763	-0.00010019	NaN	44.531	88	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503910	+		50223	25026	34947	35000							0.048798816372254805
LVTFLTSA	8	Unmodified	_LVTFLTSA_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.247286	850.48002	0.49049	0.00020907	-3.3075	-0.0014098	-2.817	-0.0012008	426.2457492271696	89.413	2.1596	89.429	88.795	90.955	0.015907	0.011046	-0.0002523	NaN	44.531	78	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502870	+		50224	25026	34947	35000							0.048798816372254805
LVTFLTSA	8	Unmodified	_LVTFLTSA_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	426.247286	850.48002	-0.078627	-3.3515E-05	-2.7834	-0.0011864	-2.862	-0.0012199	426.245984200577	89.563	1.9241	89.435	88.405	90.329	-0.12775	0.017034	0.00019453	NaN	44.531	94	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	680360	+		50225	25026	34947	35000							0.048798816372254805
LVTFSLTQN	9	Unmodified	_LVTFSLTQN_					0	0	0			REV__ENSG00000179817|ENST00000314254|MRGPRX4	REV__ENSG00000179817|ENST00000314254|MRGPRX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2998962402344	2	511.779482	1021.54441	-0.14061	-7.1964E-05	-2.3967	-0.0012266	-2.5373	-0.0012986	511.7784619987764	70.951	0.77809	70.694	70.468	71.246	-0.25712					27	18	2	0	0	0	0.02435	1	8262	8262		60.972	20.399	1	657030	+		50226	27293	34948	35001	55609	55609					0.03450036723370431
LVTGQEIAAL	10	Unmodified	_LVTGQEIAAL_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.307861328125	2	507.795132	1013.57571	-0.57284	-0.00029088	-0.65867	-0.00033447	-1.2315	-0.00062536	507.79479812624817	43.392	0.36814	43.154	42.879	43.247	-0.23736					14	9	2	0	0	0	0.03519	1	3975	3975		52.937	0	1	92091			50227	3585	34949	35002	55610	55610					0.06946609757460465
LVTGSRAC	8	Carbamidomethyl (C)	_LVTGSRAC(Carbamidomethyl (C))_	LVTGSRAC(1)		LVTGSRAC(85)		0	1	0		ENST00000488380.5_1_3:52514663-52514885:+|nuORF	ENST00000488380.5_1_3:52514663-52514885:+|nuORF	ENST00000488380.5_1_3:52514663-52514885:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.22235107421875	2	432.22382	862.433086	0.56824	0.00024561	-3.866	-0.001671	-3.2978	-0.0014254	432.2221061124939	25.085	1.1378	25.166	24.871	26.008	0.08009					42	26	2	0	0	0	0.50239	1	1110	1110		85.359	11.385	1	2687400			50228	15391	34950	35003	55611	55611	201				-0.003633011855527002
LVTGSRAC	8	Carbamidomethyl (C)	_LVTGSRAC(Carbamidomethyl (C))_					0	1	0		ENST00000488380.5_1_3:52514663-52514885:+|nuORF	ENST00000488380.5_1_3:52514663-52514885:+|nuORF	ENST00000488380.5_1_3:52514663-52514885:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	432.22382	862.433086	-0.58883	-0.00025451	-2.5008	-0.0010809	-3.0896	-0.0013354	432.22266069837934	25.191	1.213	25.191	24.83	26.043	0	0.011553	0.0002829	NaN	85.359	57	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2372400			50229	15391	34950	35003			201				-0.003633011855527002
LVTGSRAC	8	Carbamidomethyl (C)	_LVTGSRAC(Carbamidomethyl (C))_					0	1	0		ENST00000488380.5_1_3:52514663-52514885:+|nuORF	ENST00000488380.5_1_3:52514663-52514885:+|nuORF	ENST00000488380.5_1_3:52514663-52514885:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	432.22382	862.433086	-0.84302	-0.00036437	-2.2757	-0.00098362	-3.1187	-0.001348	432.2227582084327	25.215	1.0831	25.181	24.904	25.987	-0.034395	0.0019761	0.00047748	NaN	85.359	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2192300			50230	15391	34950	35003			201				-0.003633011855527002
LVTHHILV	8	Unmodified	_LVTHHILV_					0	0	0			REV__ENST00000506725.1_1_5:36608525-36613071:+|nuORF	REV__ENST00000506725.1_1_5:36608525-36613071:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.2900085449219	2	466.28982	930.565087	-0.35953	-0.00016765	0.639	0.00029796	0.27947	0.00013031	466.2899778948486	67.147	0.87184	67.147	66.883	67.755	0					54	21	3	0	0	0	1.0472	1	8018	8018		29.842	3.0454	1	1525600	+		50231	34036	34951	35004	55612	55612					0.09702671893717252
LVTIEMCNAL	10	Unmodified	_LVTIEMCNAL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000570773.5_1_17:3828718-3833746:-|nuORF;ENST00000571245.5_1_17:3831639-3833719:-|nuORF;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;PDXDC1-ATP2A1|1|fusion;PDXDC1-ATP2A1|2|fusion	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7825317382812	2	553.782853	1105.55115	0.47986	0.00026574	-0.79927	-0.00044262	-0.31941	-0.00017688	553.7823921487068	82.764	2.2274	82.544	82.173	84.401	-0.22015					87	51	2	0	0	0	0.23335	1	9986	9986		116.9	3.492	1	4488900			50232	8466;9848	34952	35005	55613	55613					0.0025989028808908188
LVTIEMCNAL	10	Unmodified	_LVTIEMCNAL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000570773.5_1_17:3828718-3833746:-|nuORF;ENST00000571245.5_1_17:3831639-3833719:-|nuORF;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;PDXDC1-ATP2A1|1|fusion;PDXDC1-ATP2A1|2|fusion	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7825927734375	2	553.782853	1105.55115	0.26248	0.00014536	-0.62666	-0.00034703	-0.36418	-0.00020168	553.782490316632	82.752	2.1822	82.571	82.201	84.383	-0.18079					95	50	2	0	0	0	0.50466	3	10006	10006;10030;10042		87.754	15.811	1	5008800			50233	8466;9848	34952	35005	55614;55615;55616	55614					0.0025989028808908188
LVTIEMCNAL	10	Unmodified	_LVTIEMCNAL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000570773.5_1_17:3828718-3833746:-|nuORF;ENST00000571245.5_1_17:3831639-3833719:-|nuORF;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;PDXDC1-ATP2A1|1|fusion;PDXDC1-ATP2A1|2|fusion	nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7828979492188	2	553.782853	1105.55115	-0.48435	-0.00026822	0.042808	2.3707E-05	-0.44154	-0.00024452	553.7828515274422	82.77	2.061	82.63	82.26	84.321	-0.14014					91	47	2	0	0	0	0.23335	4	9960	9948;9960;9985;10015		116.9	18.274	1	5065800			50234	8466;9848	34952	35005	55617;55618;55619;55620	55618					0.0025989028808908188
LVTILASRE	9	Unmodified	_LVTILASRE_					0	0	0			REV__ENST00000526482.1_1_14:92920194-92959969:+|nuORF	REV__ENST00000526482.1_1_14:92920194-92959969:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.30303955078125	2	501.303124	1000.5917	-0.56196	-0.00028171	-0.027346	-1.3709E-05	-0.58931	-0.00029542	501.3030416609013	25.762	0.62114	25.535	25.231	25.852	-0.22683					32	14	3	0	0	0	0.35646	1	1266	1266		68.787	3.3214	1	2021300	+		50235	34446	34953	35006	55621	55621					0.09142315994370165
LVTILIEE	8	Unmodified	_LVTILIEE_					0	0	0			REV__ENSG00000132507|ENST00000336458|EIF5A	REV__ENSG00000132507|ENST00000336458|EIF5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2583312988281	2	465.281326	928.548099	1.2495	0.00058136	0.27625	0.00012853	1.5257	0.0007099	465.2814657302305	63.943	0.6452	63.943	63.666	64.311	0					28	17	2	0	0	0	0.027866	1	7467	7467		31.955	12.595	1	244030	+		50236	23287	34954	35007	55622	55622					0.08096706497224204
LVTILIEE	8	Unmodified	_LVTILIEE_					0	0	0			REV__ENSG00000132507|ENST00000336458|EIF5A	REV__ENSG00000132507|ENST00000336458|EIF5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.281326	928.548099	-0.045263	-2.106E-05	1.1657	0.00054236	1.1204	0.0005213	465.2818419641116	64.17	0.58633	63.918	63.765	64.352	-0.25141	-0.033095	0.00066275	NaN	31.955	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221550	+		50237	23287	34954	35007							0.08096706497224204
LVTLCLTEEL	10	Unmodified	_LVTLCLTEEL_					0	0	0		ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6;ENST00000461897.5_1_X:107512310-107681426:-|nuORF;ENST00000477085.1_1_X:107512310-107682601:-|nuORF	ENSG00000197565|ENST00000334504|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.2828979492188	2	567.309758	1132.60496	0.65424	0.00037116	-2.1203	-0.0012029	-1.4661	-0.00083172	567.3082984468737	79.662	0.96374	79.416	79.028	79.992	-0.2465					46	22	3	0	0	0	0.03519	1	9525	9525		74.255	19.479	1	881560			50238	10017	34955	35008	55623	55623					0.04396385991435636
LVTLCLTEEL	10	Unmodified	_LVTLCLTEEL_					0	0	0		ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6;ENST00000461897.5_1_X:107512310-107681426:-|nuORF;ENST00000477085.1_1_X:107512310-107682601:-|nuORF	ENSG00000197565|ENST00000334504|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.2808837890625	2	567.309758	1132.60496	0.31464	0.0001785	-3.1083	-0.0017634	-2.7937	-0.0015849	567.3079267214532	79.567	1.2068	79.348	78.791	79.997	-0.21923					58	28	3	0	0	0	0.03519	1	9534	9534		74.255	15.473	1	680930			50239	10017	34955	35008	55624	55624					0.04396385991435636
LVTLGLLTSF	10	Unmodified	_LVTLGLLTSF_					0	0	0		ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.26708984375	2	532.323525	1062.6325	0.1187	6.3185E-05	-0.40155	-0.00021376	-0.28286	-0.00015057	532.3231599594249	71.007	1.1172	71.007	70.787	71.904	0					50	28	2	0	0	0	0.03519	1	8676	8676		58.782	2.0609	1	1870800			50240	5384	34956	35009	55625	55625					0.10368657313983931
LVTLHLIV	8	Unmodified	_LVTLHLIV_					0	0	0			REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.30218505859375	2	454.302396	906.590239	-0.94042	-0.00042723	1.0793	0.00049031	0.13884	6.3074E-05	454.30273222996027	60.568	0.75726	60.392	60.076	60.833	-0.1761					45	18	4	0	0	0	0.95417	1	6752	6752		44.531	0	1	1392300	+		50241	33152	34957	35010	55626	55626					0.13320726696292695
LVTLIIQGYSA	11	Unmodified	_LVTLIIQGYSA_					0	0	0			REV__ENSG00000177275|ENST00000318244|OR2AJ1	REV__ENSG00000177275|ENST00000318244|OR2AJ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3433227539062	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0292	1	11964	11964		30.318	5.7985	1	12648000	+		50242	27098	34958	35011	55627	55627					0.09415427371436635
LVTLPIAIF	9	Unmodified	_LVTLPIAIF_					0	0	0		ENSG00000132671|ENST00000255008|SSTR4	ENSG00000132671|ENST00000255008|SSTR4	ENSG00000132671|ENST00000255008|SSTR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.81573486328125	2	493.817879	985.621205	-0.36914	-0.00018229	-2.7347	-0.0013505	-3.1039	-0.0015327	493.81628753058146	67.058	1.1995	66.776	66.555	67.754	-0.28149					80	29	5	0	0	0	1.0051	1	7955	7955		19.36	0	1	2750100			50243	4637	34959	35012	55628	55628					0.12781880010516034
LVTLQQVLL	9	Unmodified	_LVTLQQVLL_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.831298828125	2	513.831517	1025.64848	-0.36675	-0.00018845	0.051866	2.665E-05	-0.31489	-0.0001618	513.8315025354901	67.292	1.0957	67.292	66.968	68.064	0					85	27	5	0	0	0	0.39228	1	8027	8027		66.429	0.96389	1	6089300	+		50244	20974	34960	35013	55629	55629					0.13668363550914364
LVTLSRKV	8	Unmodified	_LVTLSRKV_					0	0	0			REV__ENST00000607283.5_1_3:53053042-53126502:-|nuORF	REV__ENST00000607283.5_1_3:53053042-53126502:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.27392578125	2	458.302927	914.591301	-0.90146	-0.00041314	0.53447	0.00024495	-0.36699	-0.00016819	458.30310592693144	34.15	0.43182	33.974	33.82	34.252	-0.17557					18	10	3	0	0	0	0.027866	1	2490	2490		25.45	7.1258	1	104460	+		50245	35949	34961	35014	55630	55630					0.1305894106518508
LVTMAHIIQIL	11	Unmodified	_LVTMAHIIQIL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.9211120605469	3	417.921298	1250.74206	-0.64665	-0.00027025	-0.98038	-0.00040972	-1.627	-0.00067997	417.9208009757327	45.962	1.9586	45.81	45.343	47.302	-0.15156					136	54	3	0	0	0	1.0327	1	4481	4481		29.551	0	1	3928600			50246	981	34962	35015	55631	55631					0.12672339661685328
LVTNSRCLY	9	Unmodified	_LVTNSRCLY_					0	0	0			REV__ENST00000464717.5_1_7:154739579-154754102:-|nuORF	REV__ENST00000464717.5_1_7:154739579-154754102:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7730712890625	2	534.778959	1067.54336	-0.20556	-0.00010993	-3.5009	-0.0018722	-3.7065	-0.0019821	534.7769936104708	63.18	0.87325	62.959	62.609	63.482	-0.22097					36	21	2	0	0	0	0.35646	1	7124	7124		68.787	0.30212	1	5481100	+		50247	25119	34963	35016	55632	55632					0.012294990828195296
LVTPRMAEV	9	Unmodified	_LVTPRMAEV_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.30181884765625	2	508.283877	1014.5532	-0.44113	-0.00022422	-4.1555	-0.0021122	-4.5966	-0.0023364	508.2810206680657	56.185	0.32298	56.029	55.887	56.21	-0.15602					11	8	2	0	0	0	0.023274	1	6218	6218		77.318	51.744	1	63042			50248	2727	34964	35017	55633	55633					0.04650687088212635
LVTPVKAR	8	Unmodified	_LVTPVKAR_					0	0	0			REV__RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	REV__RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.73504638671875	2	442.28982	882.565087	2.1805	0.00096443	-2.5856	-0.0011436	-0.40503	-0.00017914	442.2885616207563	23.779	0.26307	23.588	23.442	23.705	-0.19117					7	5	2	0	0	0	0.027866	1	934	934		7.1934	0.45781	1	67316	+		50249	29133	34965	35018	55634	55634					0.11910671893701874
LVTPWLAPI	9	Unmodified	_LVTPWLAPI_					0	0	0		ENSG00000175164|ENST00000538324|ABO	ENSG00000175164|ENST00000538324|ABO	ENSG00000175164|ENST00000538324|ABO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3230895996094	2	505.307678	1008.6008	-1.2402	-0.00062668	-1.1351	-0.00057356	-2.3753	-0.0012002	505.3074774590846	79.867	0.42319	79.695	79.356	79.78	-0.17226					14	9	2	0	0	0	0.02309	1	9855	9855		79.939	0	1	56862			50250	8533	34966	35019	55635	55635					0.0968470935069945
LVTPWRLRLCI	11	Unmodified	_LVTPWRLRLCI_					0	0	0		ENSG00000188394|ENST00000616002|GPR21	ENSG00000188394|ENST00000616002|GPR21	ENSG00000188394|ENST00000616002|GPR21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.27691650390625	3	457.276075	1368.8064	0.10713	4.8986E-05	0.42795	0.00019569	0.53508	0.00024468	457.27589502889464	103.26	0.70618	103.27	102.97	103.68	0.0054169					37	16	3	0	0	0	1.0764	1	13218	13218		17.833	3.7471	1	426550			50251	9717	34967	35020	55636	55636					0.13674539538487807
LVTRANDV	8	Unmodified	_LVTRANDV_					0	0	0			REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF	REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2252502441406	2	444.250892	886.48723	-0.50425	-0.00022401	1.1038	0.00049036	0.59954	0.00026635	444.25115601216936	30.508	0.5452	30.264	30.079	30.624	-0.24415					17	12	2	0	0	0	0.027866	1	1961	1961		37.159	6.6555	1	87080	+		50252	32428	34968	35021	55637	55637					0.03944614237661881
LVTRGAPLP	9	Unmodified	_LVTRGAPLP_					0	0	0			REV__ENST00000344417.9_2_7:6647850-6648198:+|nuORF	REV__ENST00000344417.9_2_7:6647850-6648198:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2875671386719	2	462.287277	922.560001	1.0941	0.00050578	-0.64818	-0.00029964	0.44591	0.00020614	462.28699399765384	59.462	0.77258	59.462	59.108	59.88	0					57	20	4	0	0	0	0.23085	1	6800	6800		84.916	5.4645	1	6074900	+		50253	30681	34969	35022	55638	55638					0.09562368031083679
LVTSALIFH	9	Unmodified	_LVTSALIFH_					0	0	0		ENST00000300589.6_1_16:50766247-50766409:+|nuORF	ENST00000300589.6_1_16:50766247-50766409:+|nuORF	ENST00000300589.6_1_16:50766247-50766409:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.30450439453125	2	500.794935	999.575317	0.53029	0.00026557	0.64375	0.00032239	1.174	0.00058795	501.2967818459862	58.744	0.5822	58.835	58.486	59.068	0.091217					34	15	3	0	0	0	0.024386	1	6586	6586		42.474	10.52	1	187680			50254	11907	34970	35023	55639	55639					0.07551234828281395
LVTSWISSE	9	Unmodified	_LVTSWISSE_					0	0	0		ENST00000463438.5_1_3:14693292-14703332:+|nuORF	ENST00000463438.5_1_3:14693292-14703332:+|nuORF	ENST00000463438.5_1_3:14693292-14703332:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2536010742188	2	511.263665	1020.51278	-0.75765	-0.00038736	1.0343	0.0005288	0.27665	0.00014144	511.2640970420521	54.195	0.59042	54.059	53.808	54.399	-0.13617					30	17	2	0	0	0	0.024381	1	5734	5734		21.96	0	1	3228000			50255	14732	34971	35024	55640	55640					0.003340439694397901
LVTTIIVPM	9	Unmodified	_LVTTIIVPM_					0	0	0		ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	ENSG00000179468|ENST00000350513|OR9A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2873229980469	2	493.801371	985.58819	-0.44705	-0.00022075	3.0233	0.0014929	2.5762	0.0012721	493.8023809838494	22.855	0.50571	22.669	22.325	22.831	-0.18539					15	10	2	0	0	0	0.024386	1	807	807		25.45	4.9683	1	46289			50256	8898	34972	35025	55641	55641					0.09481929896162455
LVTVLKNI	8	Unmodified	_LVTVLKNI_					0	0	0			REV__ENSG00000179256|ENST00000316048|SMCO3	REV__ENSG00000179256|ENST00000316048|SMCO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.28179931640625	2	450.299853	898.585153	-0.53757	-0.00024207	-0.8754	-0.00039419	-1.413	-0.00063626	450.3007068014594	50.792	0.39538	50.873	50.676	51.071	0.08099					20	10	3	0	0	0	0.027866	1	5308	5308		18.324	0.95945	1	976450	+		50257	27250	34973	35026	55642	55642					0.13180422833659122
LVTVQLWR	8	Unmodified	_LVTVQLWR_					0	0	0			REV__ENST00000461228.1_1_2:25464515-25466797:-|nuORF	REV__ENST00000461228.1_1_2:25464515-25466797:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8058776855469	2	507.808377	1013.6022	-0.62227	-0.000316	-3.3625	-0.0017075	-3.9848	-0.0020235	507.8064844652341	20.733	0.69473	20.51	20.167	20.861	-0.22344					37	13	4	0	0	0	1.0338	1	553	553		31.955	0	1	325060	+		50258	32872	34974	35027	55643	55643					0.09594343439459863
LVTVVRAI	8	Unmodified	_LVTVVRAI_					0	0	0			REV__ENSG00000159267|ENST00000674895|HLCS	REV__ENSG00000159267|ENST00000674895|HLCS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.7928466796875	2	435.792195	869.569838	-0.20343	-8.8655E-05	0.60818	0.00026504	0.40474	0.00017638	435.7922985173313	33.233	0.88815	33.002	32.627	33.516	-0.23107					45	21	3	0	0	0	1.0572	1	2360	2360		28.254	5.2176	1	1046800	+		50259	25246	34975	35028	55644	55644					0.12983556036476784
LVTVVRAI	8	Unmodified	_LVTVVRAI_					0	0	0			REV__ENSG00000159267|ENST00000674895|HLCS	REV__ENSG00000159267|ENST00000674895|HLCS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.7926940917969	2	435.792195	869.569838	-0.31177	-0.00013587	0.5692	0.00024805	0.25744	0.00011219	435.7923048663923	33.183	0.75876	33.018	32.72	33.479	-0.16565					46	18	4	0	0	0	1.0239	2	2328	2328;2341		33.516	5.2613	1	1170000	+		50260	25246	34975	35028	55645;55646	55645					0.12983556036476784
LVVAAYRIY	9	Unmodified	_LVVAAYRIY_					0	0	0		ENSG00000131097|ENST00000253410|HIGD1B	ENSG00000131097|ENST00000253410|HIGD1B	ENSG00000131097|ENST00000253410|HIGD1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7730712890625	2	534.316035	1066.61752	-0.2154	-0.00011509	-0.32672	-0.00017457	-0.54212	-0.00028966	534.3155329912894	63.247	1.2195	63.026	62.776	63.995	-0.22097					66	30	4	0	0	0	0.024262	1	7124	7124		68.485	20.569	1	1516000			50261	4495	34976	35029	55647	55647					0.08687210236666942
LVVCFLVF	8	Unmodified	_LVVCFLVF_					0	0	0		ENST00000547430.2_1_14:62207096-62207198:+|nuORF	ENST00000547430.2_1_14:62207096-62207198:+|nuORF	ENST00000547430.2_1_14:62207096-62207198:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2719421386719	2	470.27225	938.529947	-0.81684	-0.00038414	1.1104	0.00052218	0.29354	0.00013805	470.2727082504141	91.182	1.3816	91.182	90.719	92.101	0					75	32	4	0	0	0	1.0241	1	11520	11520		33.493	0	1	4597800			50262	16533	34977	35030	55648	55648					0.05822293041535431
LVVCSIVWSL	10	Unmodified	_LVVCSIVWSL_					0	0	0			REV__ENSG00000152078|ENST00000370203|TLCD4	REV__ENSG00000152078|ENST00000370203|TLCD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.8067016601562	2	559.817553	1117.62055	-0.25934	-0.00014518	3.3787	0.0018914	3.1193	0.0017462	559.8193881096851	56.798	0.8518	56.896	56.616	57.468	0.097893					60	23	4	0	0	0	0.03519	1	6341	6341		19.997	7.0376	1	3505900	+		50263	24813	34978	35031	55649	55649					0.06644717299150216
LVVEFQSSA	9	Unmodified	_LVVEFQSSA_					0	0	0		nc|ENSG00000144218|P51826-2|AFF3	nc|ENSG00000144218|P51826-2|AFF3	nc|ENSG00000144218|P51826-2|AFF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2579650878906	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.85329	1	13403	13403		35.618	2.1027	1	6674100			50264	18354	34979	35032	55650	55650					0.012100613149982564
LVVEFQSSA	9	Unmodified	_LVVEFQSSA_					0	0	0		nc|ENSG00000144218|P51826-2|AFF3	nc|ENSG00000144218|P51826-2|AFF3	nc|ENSG00000144218|P51826-2|AFF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2578125	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.85329	1	13402	13402		35.618	0	1	7056700			50265	18354	34979	35032	55651	55651					0.012100613149982564
LVVFALLAGF	10	Unmodified	_LVVFALLAGF_					0	0	0			REV__ENSG00000131183|ENST00000324417|SLC34A1	REV__ENSG00000131183|ENST00000324417|SLC34A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2380981445312	2	525.323328	1048.6321	-0.78419	-0.00041195	-2.6167	-0.0013746	-3.4009	-0.0017866	525.322333401117	44.812	0.56656	44.56	44.142	44.709	-0.25252					21	14	2	0	0	0	0.03519	1	4137	4137		35.201	1.6851	1	93145	+		50266	23194	34980	35033	55652	55652					0.10973282384793492
LVVFIVVAVD	10	Unmodified	_LVVFIVVAVD_					0	0	0		ENSG00000170953|ENST00000306842|OR8B12	ENSG00000170953|ENST00000306842|OR8B12	ENSG00000170953|ENST00000306842|OR8B12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3047485351562	2	537.333893	1072.65323	-0.3048	-0.00016378	-1.0441	-0.00056102	-1.3489	-0.00072481	537.3334195748113	68.869	0.2292	68.576	68.405	68.634	-0.29267					10	5	2	0	0	0	0.03519	1	8215	8215		30.504	8.5438	1	177210			50267	8097	34981	35034	55653	55653					0.11981247693643127
LVVFVDSVVSD	11	Unmodified	_LVVFVDSVVSD_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.34326171875	2	589.818804	1177.62306	0.59154	0.0003489	0.8932	0.00052682	1.4847	0.00087572	589.8202229734532	92.788	0.59385	92.796	92.461	93.055	0.0077209					15	13	2	0	0	0	0.024738	1	11674	11674		26.693	8.4308	1	27597			50268	7658	34982	35035	55654	55654					0.041348442378193795
LVVGAKKI	8	Unmodified	_LVVGAKKI_					0	0	0		ENSG00000076321|ENST00000209884|KLHL20;ENST00000493170.1_1_1:173684720-173703518:+|nuORF	ENSG00000076321|ENST00000209884|KLHL20	ENSG00000076321|ENST00000209884|KLHL20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.8841857910156	2	414.289288	826.564024	-0.10482	-4.3427E-05	0.13132	5.4404E-05	0.026495	1.0977E-05	414.28918484822486	28.008	0.39038	27.856	27.649	28.04	-0.15195					14	9	2	0	0	0	0.027866	1	1565	1565		21.702	0	1	88014			50269	1581	34983	35036	55655	55655					0.1438045752480548
LVVGYAYVD	9	Unmodified	_LVVGYAYVD_					0	0	0			REV__ENST00000469505.1_1_X:47428924-47429504:+|nuORF	REV__ENST00000469505.1_1_X:47428924-47429504:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3067626953125	2	499.7633	997.512048	-0.83572	-0.00041766	-1.1351	-0.0005673	-1.9709	-0.00098497	499.76249908685725	94.155	0.42294	94.017	93.79	94.213	-0.13779					14	9	2	0	0	0	0.024443	1	11572	11572		35.201	7.3185	1	51553	+		50270	20601	34984	35037	55656	55656					0.01319249320374638
LVVHKLKTL	9	Unmodified	_LVVHKLKTL_					0	0	0			REV__DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	REV__DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2789916992188	2	525.855327	1049.6961	-0.0016979	-8.9286E-07	0.046066	2.4224E-05	0.044368	2.3331E-05	525.8546935927905	87.165	0.42165	87.13	86.983	87.405	-0.035355					11	9	2	0	0	0	0.024541	1	10929	10929		11.511	1.2458	1	50288	+		50271	19660	34985	35038	55657	55657					0.17324062541752028
LVVHSGPK	8	Unmodified	_LVVHSGPK_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	418.7533874511719	2	418.75307	835.491587	-0.39554	-0.00016563	0.61253	0.0002565	0.21699	9.0866E-05	418.7532141280306	45.637	0.9895	45.435	45.13	46.119	-0.20226					70	27	4	0	0	0	0.89627	1	4342	4342		51.335	1.3109	1	6006300	+		50272	23162	34986	35039	55658	55658					0.06726123451232979
LVVIEQERQSL	11	Unmodified	_LVVIEQERQSL_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2481689453125	3	438.585632	1312.73507	-0.45705	-0.00020046	0.97133	0.00042601	0.51428	0.00022555	438.9204142010634	32.839	0.49205	32.845	32.625	33.117	0.0066261					19	12	2	0	0	0	0.024727	1	2332	2332		17.833	0	1	154250	+		50273	22873	34987	35040	55659	55659					0.09120698314814035
LVVIIPLEAL	10	Unmodified	_LVVIIPLEAL_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.2855834960938	2	540.357368	1078.70018	-1.4446	-0.00078058	3.1993	0.0017288	1.7547	0.00094819	540.3586422454559	40.346	0.29728	40.369	40.162	40.46	0.023006					11	7	2	0	0	0	0.03519	1	3492	3492		15.642	3.435	1	102170	+		50274	28172	34988	35041	55660	55660					0.16398107244799576
LVVILLKQF	9	Unmodified	_LVVILLKQF_					0	0	0			REV__nc|ENSG00000278023|Q8NG50-12|RDM1	REV__nc|ENSG00000278023|Q8NG50-12|RDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7760009765625	2	536.860078	1071.7056	-0.64421	-0.00034585	0.42479	0.00022805	-0.21942	-0.0001178	536.8602110303779	79.193	0.57188	79.212	78.903	79.475	0.018677					17	13	2	0	0	0	0.024517	1	9767	9767		12.959	4.7279	1	118200	+		50275	29211	34989	35042	55661	55661					0.17261830827260383
LVVITQGRLS	10	Unmodified	_LVVITQGRLS_					0	0	0		nc|ENSG00000188368|A6NJB7-2|PRR19;ENSG00000188368|ENST00000341747|PRR19	nc|ENSG00000188368|A6NJB7-2|PRR19	nc|ENSG00000188368|A6NJB7-2|PRR19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3186645507812	2	543.337498	1084.66044	-0.31788	-0.00017272	0.77769	0.00042255	0.4598	0.00024983	543.3386486972014	58.887	0.28609	58.973	58.813	59.099	0.085682					11	7	2	0	0	0	0.03519	1	6615	6615		40.778	1.972	1	85239			50276	9714	34990	35043	55662	55662					0.12149980294088891
LVVKEVINRR	10	Unmodified	_LVVKEVINRR_					0	0	0		PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	613.2908935546875	2	613.390596	1224.76664	-1.091	-0.00066918	3.5398	0.0021713	2.4488	0.0015021	613.3928422957488	61.008	0.19191	60.754	60.66	60.852	-0.25373					5	4	2	0	0	0	0.03519	1	6803	6803		40.778	17.736	1	102050			50277	2813	34991	35044	55663	55663					0.16324735859393513
LVVKLKFM	8	Unmodified	_LVVKLKFM_					0	0	0		ENST00000450119.1_1_10:92813377-92813905:+|nuORF	ENST00000450119.1_1_10:92813377-92813905:+|nuORF	ENST00000450119.1_1_10:92813377-92813905:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.31396484375	2	489.314449	976.614345	-0.27597	-0.00013504	-0.79859	-0.00039076	-1.0746	-0.0005258	489.3139393052219	94.212	1.04	94.211	93.87	94.91	-0.00023651					80	24	5	0	0	0	1.0574	1	11941	11941		14.664	5.1935	1	2097800			50278	14508	34992	35045	55664	55664					0.1251024385828714
LVVKPGSKTL	10	Unmodified	_LVVKPGSKTL_					0	0	0		RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;ENSG00000176406|ENST00000696799|RIMS2;nc|ENSG00000176406|Q9UQ26-7|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2496948242188	2	521.336967	1040.65938	-0.17247	-8.9913E-05	0.19155	9.9865E-05	0.019088	9.9515E-06	521.3366558186507	72.228	1.1706	71.953	71.587	72.758	-0.2751					32	27	2	0	0	0	0.03519	1	8446	8446		45.972	8.8131	1	90030			50279	8637	34993	35046	55665	55665					0.14067765925187814
LVVKPGSKTL	10	Unmodified	_LVVKPGSKTL_					0	0	0		RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;ENSG00000176406|ENST00000696799|RIMS2;nc|ENSG00000176406|Q9UQ26-7|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.336967	1040.65938	-0.081155	-4.2309E-05	-3.632	-0.0018935	-3.7131	-0.0019358	521.3358616791029	72.046	0.8511	72.046	71.642	72.493	0	0.046648	-0.003192	NaN	45.972	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239650			50280	8637	34993	35046							0.14067765925187814
LVVLDKPK	8	Unmodified	_LVVLDKPK_					0	0	0			REV__ENSG00000172497|ENST00000307624|ACOT12	REV__ENSG00000172497|ENST00000307624|ACOT12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7828369140625	2	456.299853	910.585153	0.22004	0.00010041	2.4308	0.0011092	2.6509	0.0012096	456.3007574349764	48.648	1.6063	48.648	47.938	49.544	0					61	45	2	0	0	0	0.027866	1	5086	5086		31.955	1.4512	1	184130	+		50281	26679	34994	35047	55666	55666					0.1262842283365444
LVVLKIIKH	9	Unmodified	_LVVLKIIKH_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8091430664062	2	531.87352	1061.73249	-1.0649	-0.00056639	0.26616	0.00014156	-0.79873	-0.00042482	531.8737969334519	47.611	0.18452	47.67	47.585	47.769	0.059093					8	5	2	0	0	0	0.024541	1	4745	4745		13.775	0	1	110900			50282	5988	34995	35048	55667	55667					0.20408939438448215
LVVLLKAGV	9	Unmodified	_LVVLLKAGV_					0	0	0		nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2586364746094	2	456.318046	910.621539	-0.36882	-0.0001683	-3.1429	-0.0014341	-3.5117	-0.0016024	456.31632920402444	32.409	0.40548	32.421	32.338	32.743	0.011799					14	10	2	0	0	0	0.024487	1	2263	2263		24.203	11.244	1	33288			50283	18810	34996	35049	55668	55668					0.16265299730366678
LVVLRRPY	8	Unmodified	_LVVLRRPY_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.280029296875	2	508.324194	1014.63383	0.064891	3.2985E-05	3.8689	0.0019666	3.9338	0.0019996	508.8274078879159	48.084	0.1533	47.897	47.825	47.978	-0.18684					6	3	2	0	0	0	0.027866	1	4749	4749		14.664	5.1935	1	36683	+		50284	19804	34997	35050	55669	55669					0.12710336193401872
LVVLRSLL	8	Unmodified	_LVVLRSLL_					0	0	0		ENSG00000172426|ENST00000372163|RSPH9	ENSG00000172426|ENST00000372163|RSPH9	ENSG00000172426|ENST00000372163|RSPH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7976379394531	2	456.81567	911.616788	-0.71624	-0.00032719	1.8225	0.00083256	1.1063	0.00050537	456.8164335005168	28.238	0.12382	28.069	28.007	28.131	-0.16897					4	2	2	0	0	0	0.027866	1	1623	1623		14.664	0	1	14089			50285	8275	34998	35051	55670	55670					0.15744415587607818
LVVMFWLI	8	Unmodified	_LVVMFWLI_					0	0	0		GPR34|p.K373Nfs*5|1|0.12|ENSG00000171659|chrX:41696751-41696752|-/C|frameshift_variant;ENSG00000171659|ENST00000378142|GPR34	GPR34|p.K373Nfs*5|1|0.12|ENSG00000171659|chrX:41696751-41696752|-/C|frameshift_variant	GPR34|p.K373Nfs*5|1|0.12|ENSG00000171659|chrX:41696751-41696752|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2921142578125	2	510.801174	1019.5878	0.63319	0.00032343	-2.67	-0.0013639	-2.0369	-0.0010404	510.8001147433843	71.448	0.58105	71.159	70.883	71.464	-0.28858					19	14	2	0	0	0	0.027866	1	8665	8665		33.493	8.0428	1	259930			50286	8180	34999	35052	55671	55671					0.07878554966976026
LVVNRLSSK	9	Unmodified	_LVVNRLSSK_					0	0	0			REV__ENSG00000159147|ENST00000303071|DONSON	REV__ENSG00000159147|ENST00000303071|DONSON	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.28204345703125	2	508.316566	1014.61858	1.6238	0.00082541	4.398	0.0022356	6.0218	0.003061	508.3195548598988	23.493	0.40504	23.302	23.124	23.529	-0.19117					18	9	3	0	0	0	0.024477	1	891	891		35.618	6.4687	1	177890	+		50287	25236	35000	35053	55672	55672					0.1118542460557137
LVVPDLPTCAL	11	Unmodified	_LVVPDLPTCAL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8184204101562	2	570.820292	1139.62603	-0.15014	-8.5702E-05	-2.8061	-0.0016018	-2.9562	-0.0016875	570.8185328032396	74.747	1.0131	74.747	74.256	75.269	0					69	24	4	0	0	0	0.53206	1	9182	9182		74.255	2.3776	1	4676500			50288	4432	35001	35054	55673	55673					0.061803960909628586
LVVPIDIE	8	Unmodified	_LVVPIDIE_					0	0	0			REV__CLDN12|p.S241L|1|0.38|ENSG00000157224|chr7:90413398-90413398|C/T|missense_variant	REV__CLDN12|p.S241L|1|0.38|ENSG00000157224|chr7:90413398-90413398|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.5613098144531	2	449.268219	896.521884	-0.0033654	-1.512E-06	1.5175	0.00068176	1.5141	0.00068025	449.2687673850336	48.378	0.80162	48.191	47.825	48.626	-0.18684					52	21	4	0	0	0	0.027866	1	4733	4733		35.201	9.7505	1	1419900	+		50289	19492	35002	35055	55674	55674					0.06948437325763734
LVVQVHDLP	9	Unmodified	_LVVQVHDLP_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.81842041015625	2	510.297842	1018.58113	-0.49462	-0.0002524	-0.16993	-8.6713E-05	-0.66454	-0.00033912	510.80049164168344	74.743	0.20481	74.753	74.69	74.895	0.010376					6	4	2	0	0	0	0.024457	1	9092	9092		45.952	8.7928	1	27322			50290	9828	35003	35056	55675	55675					0.07258333339939327
LVVQVHDLP	9	Unmodified	_LVVQVHDLP_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.297842	1018.58113	0.17358	8.8577E-05	-1.5247	-0.00077805	-1.3511	-0.00068947	510.29731500186006	75.183	0.58034	75.007	74.732	75.312	-0.17548	0.043104	-0.00079561	NaN	73.975	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153810			50291	9828	35003	35056							0.07258333339939327
LVVRGNSPQ	9	Unmodified	_LVVRGNSPQ_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.8367004394531	2	485.277441	968.540328	-1.0081	-0.00048923	0.75214	0.00036499	-0.256	-0.00012423	485.27751447915495	33.897	0.3131	33.722	33.583	33.896	-0.17557					12	7	2	0	0	0	0.024436	1	2443	2443		30.504	18.297	1	123590	+		50292	26783	35004	35057	55676	55676					0.05479992020332247
LVVRVILEV	9	Unmodified	_LVVRVILEV_					0	0	0		ENST00000310078.12_1_2:228395842-228398285:+|nuORF	ENST00000310078.12_1_2:228395842-228398285:+|nuORF	ENST00000310078.12_1_2:228395842-228398285:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.3579711914062	2	520.347335	1038.68012	0.27459	0.00014288	0.34599	0.00018004	0.62059	0.00032292	520.3474483760774	82.309	0.65126	82.089	81.871	82.522	-0.22015					20	14	2	0	0	0	0.024541	1	9911	9911		24.203	1.1603	1	79543			50293	12055	35005	35058	55677	55677					0.1623235630486306
LVVSPWSAA	9	Unmodified	_LVVSPWSAA_					0	0	0		ENSG00000106591|ENST00000223324|MRPL32	ENSG00000106591|ENST00000223324|MRPL32	ENSG00000106591|ENST00000223324|MRPL32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.73138427734375	2	465.258185	928.501818	-0.30501	-0.00014191	-3.2703	-0.0015215	-3.5753	-0.0016634	465.2561666653275	40.025	0.81489	39.913	39.603	40.418	-0.11223					52	21	3	0	0	0	0.024354	1	3509	3509		30.504	14.862	1	553630			50294	2798	35006	35059	55678	55678					0.034706863857991266
LVVTEGEPPS	10	Unmodified	_LVVTEGEPPS_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2984008789062	2	514.268947	1026.52334	-0.7399	-0.00038051	-0.075553	-3.8855E-05	-0.81545	-0.00041936	514.2694237748116	34.858	0.30713	34.836	34.634	34.941	-0.021767					11	7	2	0	0	0	0.03519	1	2629	2629		49.442	20.292	1	103710			50295	4317	35007	35060	55679	55679					0.011140266238726326
LVVVLLIT	8	Unmodified	_LVVVLLIT_					0	0	0			REV__ENSG00000180934|ENST00000641900|OR56A1	REV__ENSG00000180934|ENST00000641900|OR56A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.7926940917969	2	435.307147	868.599741	-0.22561	-9.8211E-05	-2.7115	-0.0011803	-2.9371	-0.0012786	435.3058060135925	33.065	0.47544	32.9	32.72	33.195	-0.16565					17	11	2	0	0	0	0.027866	1	2328	2328		31.579	0	1	118890	+		50296	27376	35008	35061	55680	55680					0.16018494981790354
LVVVLTII	8	Unmodified	_LVVVLTII_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7928466796875	2	435.307147	868.599741	-0.17653	-7.6843E-05	-2.7896	-0.0012144	-2.9662	-0.0012912	435.30589715589133	33.156	0.40282	32.925	32.711	33.114	-0.23107					13	9	2	0	0	0	0.027866	1	2360	2360		23.037	0	1	91015			50297	5800	35009	35062	55681	55681					0.16018494981790354
LVVVMEVVL	9	Unmodified	_LVVVMEVVL_					0	0	0		ENST00000599047.1_1_19:42334540-42334855:+|nuORF	ENST00000599047.1_1_19:42334540-42334855:+|nuORF	ENST00000599047.1_1_19:42334540-42334855:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8111877441406	2	500.809196	999.60384	-0.9456	-0.00047356	4.2677	0.0021373	3.3221	0.0016637	500.8112272211827	38.177	1.1114	38.095	37.57	38.682	-0.082512					72	30	4	0	0	0	0.75282	1	3173	3173		42.474	0.078325	1	3110200			50298	17482	35010	35063	55682	55682					0.10402216413206133
LVVVRGIV	8	Unmodified	_LVVVRGIV_					0	0	0			REV__ENSG00000071909|ENST00000408978|MYO3B	REV__ENSG00000071909|ENST00000408978|MYO3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.7947692871094	2	427.794738	853.574923	-0.22715	-9.7171E-05	0.5834	0.00024958	0.35626	0.00015241	427.79484183105103	64.276	0.77437	64.014	63.719	64.493	-0.2626					45	20	3	0	0	0	1.0472	1	7526	7526		29.842	1.5873	1	1351100	+		50299	20456	35011	35064	55683	55683					0.14227859899085615
LVVVVLSRGR	10	Unmodified	_LVVVVLSRGR_					0	0	0			REV__ENST00000372285.7_1_20:44757697-44758201:+|nuORF	REV__ENST00000372285.7_1_20:44757697-44758201:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3425903320312	2	549.361308	1096.70806	-0.86334	-0.00047428	0.91591	0.00050316	0.05257	2.888E-05	549.3626492682371	50.082	0.28831	50.082	49.986	50.274	0					10	8	2	0	0	0	0.03519	1	5211	5211		20.947	0	1	84028	+		50300	31196	35012	35065	55684	55684					0.16357679284942606
LVVYVLLAP	9	Unmodified	_LVVYVLLAP_					0	0	0		nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.781982421875	2	493.817879	985.621205	0.69656	0.00034397	-4.4053	-0.0021754	-3.7088	-0.0018315	493.81565399568143	66.172	0.38742	66.172	65.875	66.262	0					17	9	3	0	0	0	0.024475	1	7857	7857		29.842	0	1	399470			50301	3029	35013	35066	55685	55685					0.12781880010516034
LVWAATREV	9	Unmodified	_LVWAATREV_					0	0	0			REV__ENSG00000075391|ENST00000367649|RASAL2	REV__ENSG00000075391|ENST00000367649|RASAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.3238525390625	2	522.795466	1043.57638	-0.39849	-0.00020833	3.44	0.0017984	3.0415	0.0015901	522.797119750633	45.444	0.8357	45.233	44.754	45.589	-0.21109					47	23	3	0	0	0	0.024487	1	4272	4272		24.203	0	1	627130	+		50302	20546	35014	35067	55686	55686					0.05633449197171103
LVWALGATY	9	Unmodified	_LVWALGATY_					0	0	0			REV__COQ5|p.R190T|1|0.23|ENSG00000110871|chr12:120516572-120516572|C/G|missense_variant	REV__COQ5|p.R190T|1|0.23|ENSG00000110871|chr12:120516572-120516572|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7558898925781	2	497.273835	992.533118	-0.75186	-0.00037388	-3.7904	-0.0018849	-4.5422	-0.0022587	497.2717764722921	39.35	0.4454	39.185	38.934	39.379	-0.16458					22	11	3	0	0	0	0.024262	1	3312	3312		57.811	8.3697	1	383730	+		50303	19610	35015	35068	55687	55687					0.03655259419883805
LVWCARAR	8	Unmodified	_LVWCARAR_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.300048828125	2	487.771271	973.52799	-0.90611	-0.00044197	3.8741	0.0018897	2.968	0.0014477	487.7717625930926	58.379	0.17415	58.192	58.066	58.24	-0.18705					6	4	2	0	0	0	0.027866	1	6586	6586		20.482	0	1	94702	+		50304	28675	35016	35069	55688	55688					0.04016677076288033
LVWEVVESV	9	Unmodified	_LVWEVVESV_					0	0	0		ENST00000444563.5_1_1:43311951-43312056:-|nuORF	ENST00000444563.5_1_1:43311951-43312056:-|nuORF	ENST00000444563.5_1_1:43311951-43312056:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2902221679688	2	530.289682	1058.56481	-0.17912	-9.4984E-05	-0.41889	-0.00022214	-0.59801	-0.00031712	530.2890282342775	86.597	1.4328	86.597	86.257	87.69	0					60	33	5	0	0	0	0.22754	1	10871	10871		85.359	0	1	1005100			50305	14426	35017	35070	55689	55689					0.037872073831977104
LVWEVVESV	9	Unmodified	_LVWEVVESV_					0	0	0		ENST00000444563.5_1_1:43311951-43312056:-|nuORF	ENST00000444563.5_1_1:43311951-43312056:-|nuORF	ENST00000444563.5_1_1:43311951-43312056:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2893676757812	2	530.289682	1058.56481	-0.26881	-0.00014255	-0.23632	-0.00012532	-0.50513	-0.00026786	530.2891841321216	86.559	0.93323	86.514	86.293	87.226	-0.045097					48	21	4	0	0	0	0.08613	2	10847	10835;10847		115.46	58.738	1	1065200			50306	14426	35017	35070	55690;55691	55691					0.037872073831977104
LVWEVVESV	9	Unmodified	_LVWEVVESV_					0	0	0		ENST00000444563.5_1_1:43311951-43312056:-|nuORF	ENST00000444563.5_1_1:43311951-43312056:-|nuORF	ENST00000444563.5_1_1:43311951-43312056:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2897338867188	2	530.289682	1058.56481	-0.28749	-0.00015245	-0.34298	-0.00018188	-0.63047	-0.00033433	530.2891006955724	86.548	1.0188	86.571	86.332	87.351	0.023666					40	23	3	0	0	0	0.074956	2	10801	10789;10801		119.56	34.197	1	1058800			50307	14426	35017	35070	55692;55693	55693					0.037872073831977104
LVWFFVAI	8	Unmodified	_LVWFFVAI_					0	0	0			REV__nc|ENSG00000037280|P35916-1|FLT4	REV__nc|ENSG00000037280|P35916-1|FLT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7714538574219	2	497.791664	993.568775	-0.41281	-0.00020549	4.2016	0.0020915	3.7888	0.0018861	497.79353793228773	31.322	0.46343	31.081	30.794	31.258	-0.24109					19	11	2	0	0	0	0.027866	1	2086	2086		16.705	6.4397	1	239940	+		50308	20068	35018	35071	55694	55694					0.07173341667544264
LVWGAWLSL	9	Unmodified	_LVWGAWLSL_					0	0	0			REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7950439453125	2	522.797478	1043.5804	-0.58027	-0.00030336	-3.5721	-0.0018675	-4.1524	-0.0021708	522.7954716166557	68.224	0.77042	68.224	67.947	68.717	0					60	19	4	0	0	0	0.26797	1	8161	8161		79.939	0.22664	1	3845600	+		50309	26053	35019	35072	55695	55695					0.060355386908895525
LVWGAWLSL	9	Unmodified	_LVWGAWLSL_					0	0	0			REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	522.797478	1043.5804	0.25862	0.00013521	-4.2332	-0.0022131	-3.9746	-0.0020779	522.7951400544905	68.337	0.75356	68.356	68.08	68.833	0.018913					56	19	4	0	0	0	0.18276	1	8115	8115		92.191	14.873	1	3183300	+		50310	26053	35019	35072	55696	55696					0.060355386908895525
LVWGLLTQ	8	Unmodified	_LVWGLLTQ_					0	0	0			REV__chrX:97120275-97141665|192|21.42|0.12|7.45|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|14	REV__chrX:97120275-97141665|192|21.42|0.12|7.45|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7775573730469	2	465.276378	928.538203	-0.0050312	-2.3409E-06	2.9917	0.001392	2.9867	0.0013896	465.2785009869373	49.548	0.33755	49.396	49.182	49.52	-0.1512					17	8	3	0	0	0	0.027866	1	5097	5097		19.36	0	1	498110	+		50311	19486	35020	35073	55697	55697					0.07107563282522733
LVWKAQNTW	9	Unmodified	_LVWKAQNTW_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.3056030273438	2	573.308741	1144.60293	-0.18528	-0.00010623	0.77281	0.00044306	0.58752	0.00033683	573.3088205765667	58.947	1.2701	58.76	58.39	59.66	-0.18795					97	31	4	0	0	0	0.013293	2	6488	6488;6501		176.09	82.891	1	3914600			50312	6839	35021	35074	55698;55699	55698					0.03641138088505613
LVWKAQNTW	9	Unmodified	_LVWKAQNTW_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.3065185546875	2	573.308741	1144.60293	0.15297	8.7697E-05	0.4685	0.0002686	0.62147	0.00035629	573.3085452659617	58.791	1.2809	58.61	58.268	59.549	-0.18134					89	31	4	0	0	0	0.013293	2	6472	6461;6472		190.52	110.58	1	3755600			50313	6839	35021	35074	55700;55701	55701					0.03641138088505613
LVWKAQNTW	9	Unmodified	_LVWKAQNTW_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156106882-156107552:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.3050537109375	2	573.308741	1144.60293	0.4915	0.00028178	0.13903	7.9706E-05	0.63053	0.00036149	573.3083107193903	58.953	1.2753	58.711	58.341	59.616	-0.24165					100	31	5	0	0	0	0.013924	2	6482	6469;6482		205.58	120.22	1	3700600			50314	6839	35021	35074	55702;55703	55703					0.03641138088505613
LVWLPRST	8	Unmodified	_LVWLPRST_					0	0	0			REV__ENST00000462306.5_1_2:128047812-128051699:-|nuORF	REV__ENST00000462306.5_1_2:128047812-128051699:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.8125	2	486.287277	970.560001	0.23434	0.00011396	-3.4297	-0.0016678	-3.1953	-0.0015539	486.2858414533096	88.827	0.58824	88.827	88.597	89.186	0					33	13	3	0	0	0	0.027866	1	11252	11252		42.474	0	1	206020	+		50315	32898	35022	35075	55704	55704					0.0735436803107632
LVWLQSKKVE	10	Unmodified	_LVWLQSKKVE_					0	0	0		ENST00000407977.6_1_17:56494486-56494591:-|nuORF;ENST00000580014.1_1_17:56494486-56494767:-|nuORF	ENST00000407977.6_1_17:56494486-56494591:-|nuORF	ENST00000407977.6_1_17:56494486-56494591:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.21221923828125	3	410.579929	1228.71796	0.38612	0.00015853	-0.097682	-4.0106E-05	0.28844	0.00011843	410.5797388990312	47.166	0.6831	46.896	46.628	47.311	-0.26939					28	18	2	0	0	0	0.03519	1	4558	4558		48.602	23.476	1	343200			50316	13757	35023	35076	55705	55705					0.11274822499649417
LVWLWPMV	8	Unmodified	_LVWLWPMV_					0	0	0		ENST00000480380.1_1_1:19545909-19546163:-|nuORF	ENST00000480380.1_1_1:19545909-19546163:-|nuORF	ENST00000480380.1_1_1:19545909-19546163:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7313842773438	2	522.290974	1042.56739	-0.72571	-0.00037903	-0.17592	-9.1879E-05	-0.90163	-0.00047091	522.2901673705205	37.957	1.0312	37.735	37.427	38.458	-0.22149					66	28	5	0	0	0	0.027866	1	3121	3121		43.626	1.1516	1	2419900			50317	15198	35024	35077	55706	55706					0.04781384307148073
LVWQQLVD	8	Unmodified	_LVWQQLVD_					0	0	0		ENSG00000265203|ENST00000584701|RBP3;RBP3|p.P1105Qfs*25|1|0.35|ENSG00000265203|chr10:47355443-47355443|C/-|frameshift_variant	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.821044921875	2	500.776742	999.538931	-0.12068	-6.0435E-05	3.4793	0.0017423	3.3586	0.0016819	500.7784123644708	67.162	0.94067	67.162	66.588	67.528	0					42	22	2	0	0	0	0.027866	1	8053	8053		25.45	0	1	220440			50318	10966	35025	35078	55707	55707					0.03914357931557788
LVWRDGEP	8	Unmodified	_LVWRDGEP_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000569069.1_1_15:75658861-75660070:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7873840332031	2	486.250892	970.48723	-0.65382	-0.00031792	0.79786	0.00038796	0.14405	7.0043E-05	486.251254884131	45.283	0.47711	45.134	44.938	45.415	-0.1488					28	13	3	0	0	0	0.027866	1	4342	4342		33.516	10.473	1	566620			50319	5409	35026	35079	55708	55708					0.0008061423766321241
LVWSCGGQDS	10	Unmodified	_LVWSCGGQDS_					0	0	0			REV__ENST00000565633.1_1_16:88729767-88737874:+|nuORF	REV__ENST00000565633.1_1_16:88729767-88737874:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2564697265625	2	526.229299	1050.44404	-0.37918	-0.00019954	-2.5917	-0.0013639	-2.9709	-0.0015634	526.2280229876142	46.21	0.67588	45.949	45.486	46.162	-0.26118					23	17	2	0	0	0	0.03519	1	4408	4408		10.265	0	1	465580	+		50320	35280	35027	35080	55709	55709					-0.07915943601915387
LVWSLVVL	8	Unmodified	_LVWSLVVL_					0	0	0			REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF	REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.22015380859375	2	464.796946	927.57934	0.090036	4.1848E-05	-3.507	-0.00163	-3.417	-0.0015882	464.79526417060674	34.202	0.35601	34.197	33.869	34.225	-0.0045624					13	8	2	0	0	0	0.027866	1	2474	2474		29.842	1.5873	1	449060	+		50321	23289	35028	35081	55710	55710					0.11265324321982462
LVWVLVGNRS	10	Unmodified	_LVWVLVGNRS_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.8355712890625	2	571.837665	1141.66078	0.41059	0.00023479	-4.2977	-0.0024576	-3.8871	-0.0022228	571.835101704116	22.784	0.97469	22.595	22.191	23.166	-0.18894					36	20	4	0	0	0	1.0665	1	846	846		37.159	2.9866	1	331060			50322	8096	35029	35082	55711	55711					0.09561400013944876
LVWVPLSLL	9	Unmodified	_LVWVPLSLL_					0	0	0			REV__ENSG00000100365|ENST00000248899|NCF4	REV__ENSG00000100365|ENST00000248899|NCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.33203125	2	520.331153	1038.64775	-0.37674	-0.00019603	-2.5678	-0.0013361	-2.9446	-0.0015322	520.3300203658873	69.687	0.79145	69.687	69.202	69.993	0					45	19	3	0	0	0	0.4855	1	8428	8428		60.294	1.512	1	8390300	+		50323	21103	35030	35083	55712	55712					0.12997568901846535
LVWVTPKN	8	Unmodified	_LVWVTPKN_					0	0	0			REV__ENSG00000155729|ENST00000359878|KCTD18	REV__ENSG00000155729|ENST00000359878|KCTD18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2778015136719	2	478.781828	955.549102	-0.47484	-0.00022734	-2.893	-0.0013851	-3.3678	-0.0016124	478.78007810408457	34.91	0.51675	34.96	34.682	35.198	0.050255					19	13	2	0	0	0	0.027866	1	2622	2622		35.201	10.998	1	535060	+		50324	25022	35031	35084	55713	55713					0.06954965656791501
LVWWTPKV	8	Unmodified	_LVWWTPKV_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7992553710938	2	514.80002	1027.58549	-0.54969	-0.00028298	-0.55795	-0.00028723	-1.1076	-0.00057021	514.7996695574594	45.302	1.4969	45.203	44.868	46.365	-0.099445					97	41	5	0	0	0	0.845	1	4271	4271		55.504	0	1	15757000			50325	7931	35032	35085	55714	55714					0.07279842553521121
LVWWTPKV	8	Unmodified	_LVWWTPKV_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.7999267578125	2	514.80002	1027.58549	-0.45759	-0.00023557	-0.57452	-0.00029576	-1.0321	-0.00053133	514.7996735856224	45.41	1.2015	45.199	44.871	46.072	-0.21109					85	33	4	0	0	0	0.50239	1	4271	4271		85.359	11.385	1	16377000			50326	7931	35032	35085	55715	55715					0.07279842553521121
LVYAKPAPAGA	11	Unmodified	_LVYAKPAPAGA_					0	0	0			REV__ENSG00000184207|ENST00000333503|PGP	REV__ENSG00000184207|ENST00000333503|PGP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2747192382812	2	529.305667	1056.59678	-1.4722	-0.00077924	2.4066	0.0012738	0.93438	0.00049457	529.3077893835941	46.378	0.14492	46.227	46.099	46.244	-0.15156					5	3	2	0	0	0	0.024766	1	4557	4557		44.117	12.162	1	54738	+		50327	27645	35033	35086	55716	55716					0.0707461985698501
LVYANELFE	9	Unmodified	_LVYANELFE_					0	0	0			REV__nc|ENSG00000069431|O60706|ABCC9	REV__nc|ENSG00000069431|O60706|ABCC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.279296875	2	549.279315	1096.54408	-0.81044	-0.00044516	-0.38994	-0.00021419	-1.2004	-0.00065934	549.2794257064895	77.736	1.0739	77.752	77.406	78.48	0.015907					63	25	5	0	0	0	0.53979	1	9547	9547		56.721	3.3696	1	2357300	+		50328	20402	35034	35087	55717	55717					-0.0003338299648021348
LVYGCPFHPL	10	Unmodified	_LVYGCPFHPL_					0	0	0			REV__ENST00000594797.5_1_19:7694682-7695523:+|nuORF	REV__ENST00000594797.5_1_19:7694682-7695523:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.3192138671875	2	573.294245	1144.57394	0.083192	4.7694E-05	2.4281	0.001392	2.5113	0.0014397	573.7976117035594	79.157	0.58394	79.006	78.737	79.321	-0.15051					22	13	2	0	0	0	0.03519	1	9490	9490		26.796	7.4361	1	62128	+		50329	35778	35035	35088	55718	55718					0.007432774678818532
LVYHEEGYL	9	Unmodified	_LVYHEEGYL_					0	0	0		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2550048828125	2	561.776939	1121.53933	0.73738	0.00041425	2.5318	0.0014223	3.2692	0.0018366	561.778775281478	63.549	0.6544	63.549	63.336	63.99	0					26	17	2	0	0	0	0.024293	1	7508	7508		42.474	13.325	1	183100			50330	4376	35036	35089	55719	55719					-0.016582671392370685
LVYHEEGYL	9	Unmodified	_LVYHEEGYL_					0	0	0		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	561.776939	1121.53933	1.4104	0.00079235	2.396	0.001346	3.8065	0.0021384	561.7784657237736	63.525	0.68142	63.579	63.338	64.019	0.054104	0.014603	-7.2075E-05	NaN	42.474	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155950			50331	4376	35036	35089							-0.016582671392370685
LVYIKSGRL	9	Unmodified	_LVYIKSGRL_					0	0	0			REV__ENSG00000162873|ENST00000367155|KLHDC8A	REV__ENSG00000162873|ENST00000367155|KLHDC8A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3140869140625	2	524.829309	1047.64407	-0.26363	-0.00013836	3.4669	0.0018195	3.2032	0.0016811	524.8302649164044	73.367	0.1142	73.177	73.123	73.237	-0.19026					4	2	2	0	0	0	0.024541	1	8614	8614		24.203	7.7296	1	35323	+		50332	25499	35037	35090	55720	55720					0.12214899127980061
LVYIQYMK	8	Unmodified	_LVYIQYMK_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.274658203125	2	529.291171	1056.56779	-1.4486	-0.00076676	-3.8291	-0.0020267	-5.2777	-0.0027935	529.2895795803449	46.378	0.31542	46.227	46.062	46.378	-0.15156					10	8	2	0	0	0	0.027866	1	4570	4570		46.766	0	1	86215			50333	8611	35038	35091	55721	55721					0.04176759236338512
LVYKEILAW	9	Unmodified	_LVYKEILAW_					0	0	0		ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2;nc|ENSG00000134955|Q8TED4-4|SLC37A2	ENSG00000134955|ENST00000403796|SLC37A2	ENSG00000134955|ENST00000403796|SLC37A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.829345703125	2	567.831517	1133.64848	-0.4122	-0.00023406	-3.2895	-0.0018679	-3.7017	-0.0021019	567.8295695138067	65.188	0.81934	64.954	64.687	65.507	-0.2345					58	19	4	0	0	0	0.25032	1	7438	7438		82.305	4.9875	1	2727500			50334	4846	35039	35092	55722	55722					0.08700363550883594
LVYKEILAW	9	Unmodified	_LVYKEILAW_					0	0	0		ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2;nc|ENSG00000134955|Q8TED4-4|SLC37A2	ENSG00000134955|ENST00000403796|SLC37A2	ENSG00000134955|ENST00000403796|SLC37A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8294067382812	2	567.831517	1133.64848	-1.142	-0.00064848	-2.7266	-0.0015483	-3.8686	-0.0021967	567.8299076024258	65.166	0.73471	64.964	64.697	65.432	-0.20254					54	17	5	0	0	0	0.43973	1	7453	7453		63.306	1.1989	1	3057400			50335	4846	35039	35092	55723	55723					0.08700363550883594
LVYLGNNYL	9	Unmodified	_LVYLGNNYL_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.77490234375	2	534.78985	1067.56515	-0.83253	-0.00044523	-0.32772	-0.00017526	-1.1603	-0.00062049	534.7895006018639	62.964	0.48186	62.78	62.596	63.078	-0.18386					21	12	2	0	0	0	0.024183	1	7139	7139		60.294	0	1	1093600			50336	4285	35040	35093	55724	55724					0.034066271030496864
LVYLIVKSI	9	Unmodified	_LVYLIVKSI_					0	0	0			REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.7793579101562	2	524.344261	1046.67397	-0.20563	-0.00010782	-0.8685	-0.00045539	-1.0741	-0.00056321	524.3436575259466	78.497	0.6255	78.513	78.275	78.9	0.015907					20	14	2	0	0	0	0.024427	1	9636	9636		34.173	0	1	122950	+		50337	34963	35041	35094	55725	55725					0.15249838073327737
LVYNPSLVV	9	Unmodified	_LVYNPSLVV_					0	0	0			REV__ENSG00000196083|ENST00000447382|IL1RAP	REV__ENSG00000196083|ENST00000447382|IL1RAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2926940917969	2	502.294768	1002.57498	-0.81202	-0.00040787	-4.0673	-0.002043	-4.8793	-0.0024509	502.2926760928546	39.196	0.785	39.22	38.956	39.741	0.023727					62	21	4	0	0	0	0.29158	1	3283	3283		76.774	7.9873	1	4695500	+		50338	28123	35042	35095	55726	55726					0.07379815108436105
LVYPFASTT	9	Unmodified	_LVYPFASTT_					0	0	0			REV__IDUA|p.A344V|1|0.35|ENSG00000127415|chr4:1002327-1002327|C/T|missense_variant	REV__IDUA|p.A344V|1|0.35|ENSG00000127415|chr4:1002327-1002327|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.77154541015625	2	499.7633	997.512048	-0.71287	-0.00035627	0.64255	0.00032112	-0.07032	-3.5144E-05	499.7633641528529	28.168	0.577	27.999	27.847	28.424	-0.16897					20	13	2	0	0	0	0.024443	1	1671	1671		12.959	0	1	90962	+		50339	36143	35043	35096	55727	55727					0.013192493203860067
LVYRFPLLL	9	Unmodified	_LVYRFPLLL_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3303833007812	2	567.357702	1132.70085	-0.095652	-5.4269E-05	0.0047325	2.685E-06	-0.090919	-5.1584E-05	567.3574129282965	93.885	0.56358	93.738	93.523	94.086	-0.14771					27	12	3	0	0	0	0.024436	1	11554	11554		30.504	7.924	1	210230	+		50340	28600	35044	35097	55728	55728					0.13980946684523587
LVYRQRSYL	9	Unmodified	_LVYRQRSYL_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	599.8050537109375	2	599.340572	1196.66659	-0.10363	-6.2107E-05	1.8207	0.0010912	1.7171	0.0010291	599.3416390178605	68.357	0.52062	68.118	67.913	68.433	-0.23939					22	12	3	0	0	0	0.024381	1	7876	7876		37.159	1.5408	1	133650	+		50341	20054	35045	35098	55729	55729					0.07612498525622868
LVYRRFLF	8	Unmodified	_LVYRRFLF_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.242919921875	2	557.332019	1112.64948	-1.149	-0.00064037	-4.2363	-0.002361	-5.3853	-0.0030014	557.329666764333	53.878	0.86254	53.742	53.428	54.291	-0.13617					37	26	2	0	0	0	0.027866	1	5633	5633		46.766	0.81448	1	1736800			50342	1714	35046	35099	55730	55730					0.0976662271045825
LVYSAVYKI	9	Unmodified	_LVYSAVYKI_					0	0	0			REV__ENSG00000153002|ENST00000282957|CPB1	REV__ENSG00000153002|ENST00000282957|CPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2738037109375	2	528.310418	1054.60628	0.4225	0.00022321	-0.60763	-0.00032101	-0.18513	-9.7805E-05	528.3089828839791	92.055	0.35754	92.065	91.832	92.189	0.009407					11	8	2	0	0	0	0.023817	1	11572	11572		71.296	0	1	225490	+		50343	24875	35047	35100	55731	55731					0.08116388142502728
LVYSLRRA	8	Unmodified	_LVYSLRRA_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.247802734375	2	489.298176	976.581799	-0.048076	-2.3523E-05	0.62157	0.00030413	0.57349	0.00028061	489.2985776806349	53.729	0.58186	53.531	53.275	53.857	-0.19739					22	17	2	0	0	0	0.027866	1	5599	5599		18.324	5.3652	1	160640	+		50344	22500	35048	35101	55732	55732					0.0925717277965532
LVYTSNDSY	9	Unmodified	_LVYTSNDSY_					0	0	0		ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant;ANKRD30A|p.F1133Lfs*7|1|0.19|ENSG00000148513|chr10:37219109-37219109|T/-|frameshift_variant;ENSG00000148513|ENST00000361713|ANKRD30A	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	ANKRD30A|p.I856Ffs*6|1|0.14|ENSG00000148513|chr10:37193209-37193209|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.792724609375	2	531.242929	1060.47131	-0.48215	-0.00025614	-3.4	-0.0018062	-3.8822	-0.0020624	531.2413186859045	24.828	0.21355	24.612	24.506	24.72	-0.2151					6	4	2	0	0	0	0.024523	1	1127	1127		29.15	0	1	20041			50345	93	35049	35102	55733	55733					-0.056511367899020115
LVYVHSIPK	9	Unmodified	_LVYVHSIPK_					0	0	0			REV__ENST00000372771.4_1_1:40668212-40688273:+|nuORF	REV__ENST00000372771.4_1_1:40668212-40688273:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2744140625	2	528.316035	1054.61752	-0.5454	-0.00028815	-3.7972	-0.0020061	-4.3426	-0.0022943	528.3140409662341	46.752	0.69531	46.752	46.308	47.003	0					62	18	5	0	0	0	0.024436	1	4669	4669		47.916	15.103	1	6879700	+		50346	31215	35050	35103	55734	55734					0.09239210236660256
LVYVLIAGNK	10	Unmodified	_LVYVLIAGNK_					0	0	0			REV__CFAP44|p.R831L|1|0.23|ENSG00000206530|chr3:113366262-113366262|C/A|missense_variant	REV__CFAP44|p.R831L|1|0.23|ENSG00000206530|chr3:113366262-113366262|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3245239257812	2	545.336967	1088.65938	-0.41666	-0.00022722	4.0899	0.0022304	3.6732	0.0020032	545.338817169613	68.048	0.2319	68.048	67.908	68.14	0					8	5	3	0	0	0	0.03519	1	8128	8128		44.117	1.6423	1	329890	+		50347	19298	35051	35104	55735	55735					0.11859765925191823
LVYYLKEHTLI	11	Unmodified	_LVYYLKEHTLI_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2681579589844	3	464.602622	1390.78604	-0.051499	-2.3927E-05	1.2702	0.00059012	1.2187	0.00056619	464.60306402820476	42.35	0.3711	42.217	42.049	42.42	-0.13219					13	10	2	0	0	0	0.024782	1	3856	3856		9.6461	0	1	97958			50348	10062	35052	35105	55736	55736					0.10627647359660841
LWAIHAKRVT	10	Unmodified	_LWAIHAKRVT_					0	0	0		ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENST00000404612.1_1_6:26322106-26322214:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8566284179688	2	597.858932	1193.70331	-1.6739	-0.0010008	-2.9165	-0.0017437	-4.5904	-0.0027444	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.118	1	11847	11847		30.318	2.4355	1	4454900			50349	13704	35053	35106	55737	55737					0.11420795142180395
LWAIQVIVAII	11	Unmodified	_LWAIQVIVAII_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.897192	1237.77983	-0.55702	-0.0003453	0.47116	0.00029207	-0.085857	-5.3223E-05	620.400800761202	94.737	0.17296	94.599	94.506	94.679	-0.13779					5	3	2	0	0	0	0.024743	1	11661	11661		44.117	25.013	1	21640			50350	2826	35054	35107	55738	55738					0.17045173918813816
LWALGGQEELI	11	Unmodified	_LWALGGQEELI_					0	0	0			REV__nc|ENSG00000114026|O15527-8|OGG1	REV__nc|ENSG00000114026|O15527-8|OGG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.8913879394531	3	410.223923	1227.64994	-0.44176	-0.00018122	3.1838	0.0013061	2.7421	0.0011249	410.22519420416444	28.414	0.92579	28.263	27.729	28.655	-0.15195					37	22	2	0	0	0	0.02476	1	1637	1637		45.908	4.4815	1	1617600	+		50351	22101	35055	35108	55739	55739					0.0452195284899517
LWALLVYNA	9	Unmodified	_LWALLVYNA_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8004150390625	2	531.80276	1061.59097	-0.48839	-0.00025973	-4.271	-0.0022713	-4.7593	-0.002531	531.8005540640878	56.993	1.6699	56.829	55.986	57.656	-0.16431					120	45	5	0	0	0	0.64155	1	6400	6400		50.025	5.6474	1	25540000			50352	3212	35056	35109	55740	55740					0.06263521345317713
LWALPLLAVLL	11	Unmodified	_LWALPLLAVLL_					0	0	0			REV__ENSG00000113262|ENST00000517717|GRM6	REV__ENSG00000113262|ENST00000517717|GRM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	611.3563232421875	2	611.40211	1220.78967	-0.83976	-0.00051343	-1.7924	-0.0010959	-2.6322	-0.0016093	611.4009732736426	94.551	0.12935	94.551	94.444	94.573	0					4	2	2	0	0	0	0.02479	1	12020	12020		17.365	3.9109	1	39206	+		50353	22052	35057	35110	55741	55741					0.18810361924192875
LWAMLIIV	8	Oxidation (M)	_LWAM(Oxidation (M))LIIV_		LWAM(1)LIIV		LWAM(44)LIIV	0	0	1		ENST00000600970.5_1_19:17327144-17330619:+|nuORF;ENSG00000053501|ENST00000263897|USE1	ENST00000600970.5_1_19:17327144-17330619:+|nuORF	ENST00000600970.5_1_19:17327144-17330619:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7906799316406	2	487.790807	973.56706	-0.4369	-0.00021311	0.010937	5.335E-06	-0.42596	-0.00020778	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.9599	1	10527	10527		43.626	10.133	1	2003200			50354	1160	35058	35111	55742	55742		35			0.07921964587308139
LWAPRSLCF	9	Unmodified	_LWAPRSLCF_					0	0	0		ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2891235351562	2	546.786587	1091.55862	-0.66225	-0.00036211	2.8001	0.0015311	2.1379	0.0011689	547.2895629466142	57.182	1.3224	57.015	56.402	57.725	-0.1672					90	34	4	0	0	0	0.77768	1	6236	6236		40.778	1.972	1	2296600			50355	17396	35059	35112	55743	55743					0.016504106706634047
LWAPWALPRR	10	Unmodified	_LWAPWALPRR_					0	0	0			REV__nc|ENSG00000180902|Q8N465-2|D2HGDH	REV__nc|ENSG00000180902|Q8N465-2|D2HGDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3710327148438	2	633.366924	1264.7193	1.1238	0.00071176	2.3961	0.0015176	3.5199	0.0022294	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0541	1	12197	12197		38.806	0.99462	1	8250400	+		50356	27371	35060	35113	55744	55744					0.09752501379034584
LWAQEPAQV	9	Unmodified	_LWAQEPAQV_					0	0	0		ENST00000324379.9_1_1:40219137-40219350:+|nuORF	ENST00000324379.9_1_1:40219137-40219350:+|nuORF	ENST00000324379.9_1_1:40219137-40219350:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3063354492188	2	521.271824	1040.5291	-0.31555	-0.00016449	-1.5291	-0.00079706	-1.8446	-0.00096154	521.2698299092814	54.907	0.52448	54.756	54.541	55.065	-0.15036					21	14	2	0	0	0	0.024466	1	6017	6017		39.253	5.7372	1	361320			50357	12254	35061	35114	55745	55745					0.010451699261693648
LWAVREEPA	9	Unmodified	_LWAVREEPA_					0	0	0			REV__ENST00000359759.8_2_21:46931137-46932167:+|nuORF	REV__ENST00000359759.8_2_21:46931137-46932167:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.839111328125	2	535.785099	1069.55564	0.0010274	5.5045E-07	3.869	0.0020729	3.87	0.0020735	536.2899223885571	71.719	0.41158	71.719	71.566	71.978	0					17	10	2	0	0	0	0.023817	1	8741	8741		60.972	0	1	128260	+		50358	30887	35062	35115	55746	55746					0.023648588175319674
LWDLFVKV	8	Unmodified	_LWDLFVKV_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2746887207031	2	510.299853	1018.58515	0.12722	6.4923E-05	2.4971	0.0012743	2.6243	0.0013392	510.3010030359521	90.959	1.04	90.97	90.279	91.319	0.011276					33	24	2	0	0	0	0.027866	1	11419	11419		97.473	1.2823	1	798480	+		50359	28529	35063	35116	55747	55747					0.07660422833657776
LWDPESYMW	9	Unmodified	_LWDPESYMW_					0	0	0		ENST00000315732.2_1_1:36859143-36859281:-|nuORF	ENST00000315732.2_1_1:36859143-36859281:-|nuORF	ENST00000315732.2_1_1:36859143-36859281:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	612.7982177734375	2	613.762975	1225.5114	0.065067	3.9936E-05	1.5203	0.0009331	1.5854	0.00097304	613.7625672341474	59.234	0.52452	59.053	58.831	59.356	-0.18134					20	12	2	0	0	0	0.024443	1	6517	6517		26.796	6.7993	1	341720			50360	12139	35064	35117	55748	55748					-0.09233913390971793
LWDPLSLLRGL	11	Unmodified	_LWDPLSLLRGL_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8826293945312	2	641.87953	1281.74451	1.496	0.00096027	2.9831	0.0019148	4.4792	0.0028751	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	0.96599	2	12160	12160;12199		44.377	3.6343	1	2979200			50361	6346	35065	35118	55749;55750	55749					0.11490511390979918
LWDPLSLLRGL	11	Unmodified	_LWDPLSLLRGL_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8824462890625	2	641.87953	1281.74451	0.89146	0.00057221	3.5954	0.0023078	4.4869	0.00288	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.96599	2	12163	12113;12163		44.377	9.7538	1	2810000			50362	6346	35065	35118	55751;55752	55752					0.11490511390979918
LWELSLKI	8	Unmodified	_LWELSLKI_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.29119873046875	2	501.305136	1000.59572	-0.28448	-0.00014261	3.8525	0.0019313	3.5681	0.0017887	501.30689664107666	84.714	0.25011	84.74	84.579	84.829	0.025528					8	5	2	0	0	0	0.027866	1	10535	10535		55.504	14.932	1	37480			50363	2834	35066	35119	55753	55753					0.09544405488099983
LWELYIKRQRY	11	Unmodified	_LWELYIKRQRY_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2994384765625	3	523.296304	1566.86708	2.8763	0.0015052	4.364	0.0022837	7.2403	0.0037888	523.2986571824501	17.392	0.73946	17.392	17.201	17.94	0					23	14	4	0	0	0	1.1135	1	164	164		5.6988	2.0797	1	50372	+		50364	27618	35067	35120	55754	55754					0.10632348122408075
LWEPAGAWLAL	11	Unmodified	_LWEPAGAWLAL_					0	0	0		FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant;nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	FBLN2|p.G214Vfs*60|1|0.33|ENSG00000163520|chr3:13570991-13570991|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	613.83251953125	2	613.832049	1225.64954	-0.40645	-0.00024949	0.50061	0.00030729	0.094164	5.7801E-05	613.8323034815196	99.114	1.0987	99.114	98.647	99.746	0					87	24	4	0	0	0	0.45219	1	12662	12662		79.451	2.6769	1	1972500			50365	7096	35068	35121	55755	55755					0.04574577919811418
LWEQQALE	8	Unmodified	_LWEQQALE_					0	0	0			REV__ENST00000481583.1_1_1:93821317-93826193:+|nuORF	REV__ENST00000481583.1_1_1:93821317-93826193:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.75189208984375	2	508.756007	1015.49746	-1.0632	-0.00054093	-3.0502	-0.0015518	-4.1134	-0.0020927	508.754501335589	43.539	0.76152	43.539	43.186	43.948	0					51	20	4	0	0	0	0.56592	1	4084	4084		79.451	1.1872	1	3202400	+		50366	22349	35069	35122	55756	55756					-0.009668228277632807
LWERLLSV	8	Unmodified	_LWERLLSV_					0	0	0		ENST00000290551.4_1_1:203277738-203278125:+|nuORF	ENST00000290551.4_1_1:203277738-203278125:+|nuORF	ENST00000290551.4_1_1:203277738-203278125:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.3017883300781	2	508.300384	1014.58622	-0.97292	-0.00049454	3.7139	0.0018878	2.741	0.0013933	508.3020902894339	56.024	1.3523	55.809	55.003	56.356	-0.21551					90	36	3	0	0	0	0.68164	1	6067	6067		68.787	2.3575	1	1989300			50367	11784	35070	35123	55757	55757					0.07950637202566213
LWETSSHLPV	10	Unmodified	_LWETSSHLPV_					0	0	0		chrX:153723288-153724044|170|15.65|0.86|4.19|-|0|BCAP31,BCAP31|1	chrX:153723288-153724044|170|15.65|0.86|4.19|-|0|BCAP31,BCAP31|1	chrX:153723288-153724044|170|15.65|0.86|4.19|-|0|BCAP31,BCAP31|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.266357421875	2	584.803488	1167.59242	-0.70898	-0.00041462	-0.97497	-0.00057016	-1.6839	-0.00098478	584.8030328112077	72.823	1.1375	72.558	71.84	72.977	-0.26479					34	26	2	0	0	0	0.03519	1	8606	8606		34.173	1.422	1	120090			50368	444	35071	35124	55758	55758					0.01533110643413238
LWFIALAKP	9	Unmodified	_LWFIALAKP_					0	0	0			REV__ENSG00000255307|ENST00000530810|OR52B2	REV__ENSG00000255307|ENST00000530810|OR52B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8031005859375	2	529.823495	1057.63244	-0.74925	-0.00039697	-2.8065	-0.001487	-3.5558	-0.0018839	529.822036907486	64.387	0.47748	64.124	63.939	64.417	-0.2626					20	12	2	0	0	0	0.024354	1	7559	7559		38.806	0	1	192400	+		50369	29065	35072	35125	55759	55759					0.10592702104645468
LWFIPGLTT	9	Unmodified	_LWFIPGLTT_					0	0	0			REV__ENST00000592573.1_1_19:55556444-55559456:-|nuORF	REV__ENST00000592573.1_1_19:55556444-55559456:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2968139648438	2	524.29731	1046.58007	-0.48822	-0.00025597	0.40626	0.000213	-0.08196	-4.2972E-05	524.2974061099324	100.39	1.4136	100.39	99.871	101.28	0					101	34	5	0	0	0	0.33184	1	12865	12865		71.378	1.7503	1	3300600	+		50370	25320	35073	35126	55760	55760					0.05864118971044263
LWFVRLAL	8	Unmodified	_LWFVRLAL_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.8033752441406	2	509.315838	1016.61712	0.59622	0.00030366	1.4441	0.00073551	2.0403	0.0010392	509.8168816026963	85.448	0.21075	85.298	85.158	85.368	-0.14967					9	4	3	0	0	0	0.027866	1	10348	10348		28.254	8.8943	1	60612			50371	8204	35074	35127	55761	55761					0.10947835307467813
LWGFLQRS	8	Unmodified	_LWGFLQRS_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.77923583984375	2	503.777077	1005.5396	-0.54807	-0.00027611	3.463	0.0017446	2.9149	0.0014685	503.7786342981133	24.082	2.4579	24.082	23.321	25.779	0					127	57	3	0	0	0	0.94517	1	1023	1023		45.952	1.4209	1	878790	+		50372	27155	35075	35128	55762	55762					0.037051973712891595
LWGGLLPPRTE	11	Unmodified	_LWGGLLPPRTE_					0	0	0		ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.22735595703125	3	413.567912	1237.68191	-0.020889	-8.6389E-06	-2.3214	-0.00096005	-2.3423	-0.00096869	413.5668955003494	36.679	0.63599	36.474	36.203	36.839	-0.20518					38	15	3	0	0	0	0.024768	1	2932	2932		34.087	14.824	1	594060			50373	8897	35076	35129	55763	55763					0.07257365322811893
LWGKCLLL	8	Carbamidomethyl (C)	_LWGKC(Carbamidomethyl (C))LLL_	LWGKC(1)LLL		LWGKC(87)LLL		0	1	0		ENST00000526129.5_1_1:76199287-76200536:+|nuORF	ENST00000526129.5_1_1:76199287-76200536:+|nuORF	ENST00000526129.5_1_1:76199287-76200536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.79473876953125	2	501.793881	1001.57321	-0.0037369	-1.8751E-06	1.9639	0.0009855	1.9602	0.00098362	501.79478656848715	50.013	0.75963	50.094	49.584	50.344	0.08099					70	21	4	0	0	0	0.48546	1	5136	5136		86.935	6.9954	1	9564100			50374	16112	35077	35130	55764	55764	218				0.07248482818818047
LWGTAEDY	8	Unmodified	_LWGTAEDY_					0	0	0		ENST00000556883.1_1_14:93650616-93651154:-|nuORF	ENST00000556883.1_1_14:93650616-93651154:-|nuORF	ENST00000556883.1_1_14:93650616-93651154:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.2560729980469	2	477.713808	953.413062	-0.1759	-8.4029E-05	-4.097	-0.0019572	-4.2729	-0.0020412	477.71185427293733	41.67	0.56503	41.44	41.196	41.761	-0.23029					30	14	3	0	0	0	0.027866	1	3714	3714		54.765	15.959	1	517980			50375	16721	35078	35131	55765	55765					-0.06550773644528363
LWHAVLGFVCV	11	Unmodified	_LWHAVLGFVCV_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.3351440429688	2	622.336444	1242.65834	-0.54269	-0.00033774	0.68721	0.00042768	0.14452	8.9942E-05	622.3367429399468	110.01	0.87253	110.01	109.85	110.73	0.0059204					89	28	4	0	0	0	1.0533	1	13913	13913		24.203	5.8783	1	2532400	+		50376	23983	35079	35132	55766	55766					0.046712282846101516
LWIGKPGDKRL	11	Unmodified	_LWIGKPGDKRL_					0	0	0		ENST00000566470.1_1_16:30216115-30216589:-|nuORF	ENST00000566470.1_1_16:30216115-30216589:-|nuORF	ENST00000566470.1_1_16:30216115-30216589:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.882568359375	2	641.885147	1281.75574	-2.5036	-0.001607	-1.8686	-0.0011994	-4.3722	-0.0028064	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	0.95882	1	11602	11602		45.972	5.1941	1	1400600			50377	16943	35080	35133	55767	55767					0.12613333485114708
LWIPLLLEL	9	Unmodified	_LWIPLLLEL_					0	0	0			REV__nc|ENSG00000166206|P28472-2|GABRB3	REV__nc|ENSG00000166206|P28472-2|GABRB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.3519287109375	2	555.352086	1108.68962	0.4637	0.00025752	1.9279	0.0010707	2.3916	0.0013282	555.3530876150478	99.618	0.75595	99.618	99.224	99.98	0					46	17	4	0	0	0	0.75282	2	12774	12723;12774		42.474	7.2737	1	1104100	+		50378	36884	35081	35134	55768;55769	55769					0.13962124590375424
LWIWTEPF	8	Unmodified	_LWIWTEPF_					0	0	0			REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2767333984375	2	546.28166	1090.54877	-1.2236	-0.00066843	3.9015	0.0021313	2.6778	0.0014629	546.2837395791094	29.322	0.77296	29.077	28.838	29.611	-0.24524					26	17	2	0	0	0	0.027866	1	1771	1771		29.842	0	1	542170	+		50379	19269	35082	35135	55770	55770					0.007115459369288146
LWKAKCDCE	9	Unmodified	_LWKAKCDCE_					0	0	0			REV__ENSG00000153012|ENST00000382114|LGI2	REV__ENSG00000153012|ENST00000382114|LGI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.7779541015625	2	548.25172	1094.48889	0.050683	2.7787E-05	0.97236	0.0005331	1.023	0.00056089	548.2515283054306	64.285	0.40755	64.331	64.117	64.525	0.045502					23	10	3	0	0	0	0.024323	1	7466	7466		53.351	3.3269	1	223730	+		50380	24876	35083	35136	55771	55771					-0.05457836060236332
LWKNLQDP	8	Unmodified	_LWKNLQDP_					0	0	0		nc|ENSG00000248124|Q2M238|RRN3P1	nc|ENSG00000248124|Q2M238|RRN3P1	nc|ENSG00000248124|Q2M238|RRN3P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.27239990234375	2	507.274367	1012.53418	-0.47358	-0.00024023	-4.0693	-0.0020642	-4.5429	-0.0023045	507.2721522921695	35.717	0.96012	35.761	35.42	36.38	0.04406					36	25	2	0	0	0	0.68164	1	2718	2718		68.787	1.8249	1	2538200			50381	18766	35084	35137	55772	55772					0.028414737887942465
LWKSCVKV	8	Carbamidomethyl (C)	_LWKSC(Carbamidomethyl (C))VKV_	LWKSC(1)VKV		LWKSC(69)VKV		0	1	0			REV__THSD7A|p.R1058C|1|0.14|ENSG00000005108|chr7:11429018-11429018|G/A|missense_variant	REV__THSD7A|p.R1058C|1|0.14|ENSG00000005108|chr7:11429018-11429018|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2762756347656	2	510.288963	1018.56337	-0.44624	-0.00022771	1.0571	0.00053944	0.61089	0.00031173	510.29056149938066	92.284	1.7403	92.276	91.16	92.901	-0.0082932					58	41	2	0	0	0	0.027866	1	11508	11508		68.787	22.835	1	61979	+		50382	37687	35085	35138	55773	55773	488				0.05483294813450357
LWKSLILL	8	Unmodified	_LWKSLILL_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3060302734375	2	493.325871	984.637189	-0.43467	-0.00021444	0.92997	0.00045878	0.4953	0.00024434	493.3267250571893	85.059	0.20572	85.001	84.939	85.145	-0.05761					7	4	2	0	0	0	0.027866	1	10643	10643		44.117	3.5442	1	32431	+		50383	24824	35086	35139	55774	55774					0.1442558624744379
LWLFDLVL	8	Unmodified	_LWLFDLVL_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|26	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8036804199219	2	509.802229	1017.5899	0.50937	0.00025968	2.3622	0.0012042	2.8715	0.0014639	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.96719	1	10896	10896		42.474	12.633	1	2754700	+		50384	19330	35087	35140	55775	55775					0.08181306976405267
LWLFPSVL	8	Unmodified	_LWLFPSVL_					0	0	0		ENST00000405315.8_2_19:49425789-49425948:+|nuORF	ENST00000405315.8_2_19:49425789-49425948:+|nuORF	ENST00000405315.8_2_19:49425789-49425948:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7903747558594	2	487.789121	973.56369	0.29152	0.0001422	2.7499	0.0013414	3.0414	0.0014836	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	1.0017	1	10367	10367		37.028	0	1	2091900			50385	13713	35088	35141	55776	55776					0.0758503780494948
LWLGWTVL	8	Unmodified	_LWLGWTVL_					0	0	0		ENST00000560010.1_1_15:96833853-96870526:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF	ENST00000560010.1_1_15:96833853-96870526:-|nuORF	ENST00000560010.1_1_15:96833853-96870526:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2854309082031	2	494.286746	986.558939	0.4522	0.00022352	-1.1403	-0.00056364	-0.68812	-0.00034013	494.28603033614456	51.467	1.0551	51.467	51.143	52.198	0					87	29	4	0	0	0	0.82104	1	5470	5470		57.453	1.9484	1	3656300			50386	15659	35089	35142	55777	55777					0.06512153662174569
LWLLCLVA	8	Unmodified	_LWLLCLVA_					0	0	0		ENSG00000158966|ENST00000651257|CACHD1	ENSG00000158966|ENST00000651257|CACHD1	ENSG00000158966|ENST00000651257|CACHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7778625488281	2	465.777699	929.540846	-0.18378	-8.5601E-05	-0.8825	-0.00041105	-1.0663	-0.00049665	465.7770589296706	81.53	4.4485	81.399	79.15	83.599	-0.13075					270	106	3	0	0	0	0.9599	1	10189	10189		43.626	0	1	1253000			50387	6712	35090	35143	55778	55778					0.07325695415806877
LWLLRIIY	8	Unmodified	_LWLLRIIY_					0	0	0			REV__ENST00000378230.7_1_1:3761896-3764067:-|nuORF	REV__ENST00000378230.7_1_1:3761896-3764067:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3241577148438	2	545.344595	1088.67464	-0.47178	-0.00025728	1.6858	0.00091936	1.214	0.00066207	545.3445389095028	68.16	0.23195	68.16	67.947	68.179	0					6	5	2	0	0	0	0.027866	1	8152	8152		28.254	0	1	198490	+		50388	31397	35091	35144	55779	55779					0.13384677513045062
LWLPQQGSGT	10	Unmodified	_LWLPQQGSGT_					0	0	0			REV__CLCC1|p.R535Kfs*54|1|0.27|ENSG00000121940|chr1:108934722-108934723|-/T|frameshift_variant	REV__CLCC1|p.R535Kfs*54|1|0.27|ENSG00000121940|chr1:108934722-108934723|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.286865234375	2	543.782556	1085.55056	4.5537	0.0024762	-0.32725	-0.00017795	4.2265	0.0022983	543.7815692796459	16.538	0.37453	16.595	16.382	16.757	0.057352					26	14	3	0	0	0	1.1237	1	68	68		23.042	1.0826	1	24858	+		50389	19491	35092	35145	55780	55780					0.01120554954900399
LWLPVFIS	8	Unmodified	_LWLPVFIS_					0	0	0			REV__ENSG00000226479|ENST00000426077|TMEM185B	REV__ENSG00000226479|ENST00000426077|TMEM185B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7906188964844	2	487.789121	973.56369	0.56547	0.00027583	2.4795	0.0012095	3.0449	0.0014853	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	1.0574	1	10047	10047		21.702	0.7554	1	2408700	+		50390	28874	35093	35146	55781	55781					0.0758503780494948
LWLVLRYRHKR	11	Unmodified	_LWLVLRYRHKR_					0	0	0		ENSG00000077585|ENST00000366592|GPR137B;ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENSG00000077585|ENST00000366592|GPR137B	ENSG00000077585|ENST00000366592|GPR137B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.9863891601562	3	513.984283	1538.93102	4.6229	0.0023761	-1.2416	-0.00063815	3.3814	0.001738	513.9836648459913	17.446	0.44516	17.196	17.025	17.47	-0.25049					20	8	3	0	0	0	1.1135	1	158	158		6.3209	2.9122	1	63778			50391	1618	35094	35147	55782	55782					0.183111730699693
LWLVVANGTL	10	Unmodified	_LWLVVANGTL_					0	0	0			REV__ENSG00000179817|ENST00000314254|MRGPRX4	REV__ENSG00000179817|ENST00000314254|MRGPRX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2977905273438	2	543.321317	1084.62808	-1.049	-0.00056996	-3.7356	-0.0020296	-4.7846	-0.0025996	543.3191745977392	62.538	0.4086	62.601	62.401	62.81	0.062767					17	9	2	0	0	0	0.03519	1	7197	7197		35.618	2.8059	1	1134200	+		50392	27293	35095	35148	55783	55783					0.08915192891095103
LWMAAMKEDP	10	Unmodified	_LWMAAMKEDP_					0	0	0		nc|ENSG00000148834|P78417-2|GSTO1;nc|ENSG00000148834|P78417-3|GSTO1;ENSG00000148834|ENST00000369713|GSTO1	nc|ENSG00000148834|P78417-2|GSTO1	nc|ENSG00000148834|P78417-2|GSTO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.2810668945312	2	596.280477	1190.5464	0.081398	4.8536E-05	-0.2059	-0.00012278	-0.12451	-7.4241E-05	596.2802682906411	59.395	0.6092	59.147	58.847	59.457	-0.24842					35	14	3	0	0	0	0.82838	1	6542	6542		58.782	7.2542	1	2924100			50393	6052	35096	35149	55784	55784					-0.041249938546570775
LWMALEFEI	9	Unmodified	_LWMALEFEI_					0	0	0			REV__ENST00000518935.5_1_6:56497831-56498961:-|nuORF	REV__ENST00000518935.5_1_6:56497831-56498961:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.3513793945312	2	576.293911	1150.57327	-0.51438	-0.00029644	0.22488	0.0001296	-0.2895	-0.00016684	576.2941844485256	17.101	0.58372	16.893	16.48	17.064	-0.20777					18	11	2	0	0	0	0.024541	1	141	141		25.45	8.0852	1	11266	+		50394	34247	35097	35150	55785	55785					0.004004380281457998
LWMSLLLV	8	Unmodified	_LWMSLLLV_					0	0	0		ENST00000372577.2_1_9:131745594-131745630:+|nuORF	ENST00000372577.2_1_9:131745594-131745630:+|nuORF	ENST00000372577.2_1_9:131745594-131745630:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7904968261719	2	487.790807	973.56706	0.56547	0.00027583	-0.97572	-0.00047595	-0.41025	-0.00020012	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.94001	2	10205	10011;10205		46.766	11.015	1	2408700			50395	13046	35098	35151	55786;55787	55787					0.07921964587319508
LWMSLLLV	8	Unmodified	_LWMSLLLV_					0	0	0		ENST00000372577.2_1_9:131745594-131745630:+|nuORF	ENST00000372577.2_1_9:131745594-131745630:+|nuORF	ENST00000372577.2_1_9:131745594-131745630:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.79058837890625	2	487.790807	973.56706	0.33726	0.00016451	-0.79423	-0.00038742	-0.45697	-0.0002229	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0133	1	10116	10116		35.201	0	1	1999500			50396	13046	35098	35151	55788	55788					0.07921964587319508
LWNIAKSNAQ	10	Unmodified	_LWNIAKSNAQ_					0	0	0			REV__ENST00000294064.8_1_11:74717502-74717559:+|nuORF	REV__ENST00000294064.8_1_11:74717502-74717559:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.8377685546875	2	572.809105	1143.60366	-0.4737	-0.00027134	-0.50104	-0.000287	-0.97474	-0.00055834	572.8087110633172	62.547	0.62794	62.289	61.82	62.448	-0.25824					35	15	3	0	0	0	0.03519	1	6957	6957		14.865	3.9993	1	1078900	+		50397	29963	35099	35152	55789	55789					0.03759932737557392
LWPDLLIRLL	10	Unmodified	_LWPDLLIRLL_					0	0	0		ENST00000329314.5_1_4:165897854-165898724:-|nuORF	ENST00000329314.5_1_4:165897854-165898724:-|nuORF	ENST00000329314.5_1_4:165897854-165898724:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	626.3958129882812	2	626.394816	1250.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.69	1	107.54	107.04	108.04	-0.15438								0	0	0	0.77833	1	13355	13355		12.207	1.3413	1				50398	12318	35100	35153	55790	55790					0.15972289776027537
LWPMKPLLPV	10	Unmodified	_LWPMKPLLPV_					0	0	0			REV__ENST00000326294.3_1_11:67203005-67203194:-|nuORF	REV__ENST00000326294.3_1_11:67203005-67203194:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.359375	2	597.359388	1192.70422	0.52306	0.00031246	-1.439	-0.00085962	-0.91597	-0.00054716	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	1.1056	1	12214	12214		31.955	7.7521	1	2779900	+		50399	30402	35101	35154	55791	55791					0.11557873466858837
LWPRPDPALL	10	Unmodified	_LWPRPDPALL_					0	0	0		ENST00000596657.1_1_19:6373528-6374597:+|nuORF;ENST00000245812.7_1_19:6372800-6374597:+|nuORF	ENST00000596657.1_1_19:6373528-6374597:+|nuORF	ENST00000596657.1_1_19:6373528-6374597:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3432006835938	2	589.340041	1176.66553	0.92698	0.00054631	3.2392	0.001909	4.1662	0.0024553	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0781	1	11286	11286		35.618	5.1146	1	4746700			50400	11315	35102	35155	55792	55792					0.0842628415668969
LWPRVATP	8	Unmodified	_LWPRVATP_					0	0	0		ENST00000395491.6_1_17:21217545-21218022:+|nuORF	ENST00000395491.6_1_17:21217545-21218022:+|nuORF	ENST00000395491.6_1_17:21217545-21218022:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.272705078125	2	470.27417	938.533787	0.016273	7.6529E-06	-3.8816	-0.0018254	-3.8653	-0.0018178	470.2722398350845	91.233	1.3697	91.221	90.785	92.155	-0.012383					81	32	4	0	0	0	0.93274	1	11494	11494		47.916	4.2896	1	4459900			50401	13521	35103	35156	55793	55793					0.06206098859604481
LWPTAKKAS	9	Unmodified	_LWPTAKKAS_					0	0	0		ENST00000592761.2_1_17:76851650-76851731:-|nuORF	ENST00000592761.2_1_17:76851650-76851731:-|nuORF	ENST00000592761.2_1_17:76851650-76851731:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2906188964844	2	501.292559	1000.57057	-0.25386	-0.00012726	-4.0451	-0.0020278	-4.2989	-0.002155	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.83071	1	10020	10020		37.159	8.0096	1	2648000			50402	17381	35104	35157	55794	55794					0.07030350685522535
LWPTPVSRTLL	11	Unmodified	_LWPTPVSRTLL_					0	0	0			REV__ENST00000375218.3_1_1:19438989-19439337:-|nuORF	REV__ENST00000375218.3_1_1:19438989-19439337:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8827514648438	2	641.87953	1281.74451	0.89146	0.00057221	3.5954	0.0023078	4.4869	0.00288	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.93459	1	12199	12199		49.536	3.5638	1	2810000	+		50403	31323	35105	35158	55795	55795					0.11490511391002656
LWPWWGEP	8	Unmodified	_LWPWWGEP_					0	0	0		ENSG00000090857|ENST00000288050|PDPR;nc|ENSG00000090857|Q8NCN5-2|PDPR	ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.837890625	2	535.758352	1069.50215	-0.22292	-0.00011943	-0.13347	-7.1506E-05	-0.35639	-0.00019094	535.7577700226836	71.695	1.0508	71.706	71.2	72.251	0.010735					45	27	2	0	0	0	0.027866	1	8688	8688		54.765	3.4292	1	150160			50404	1940	35106	35159	55796	55796					-0.02981893894343557
LWQGVQQSTW	10	Unmodified	_LWQGVQQSTW_					0	0	0			REV__ENSG00000167100|ENST00000330175|SAMD14	REV__ENSG00000167100|ENST00000330175|SAMD14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	616.3253784179688	2	616.806562	1231.59857	-1.0989	-0.00067779	1.7438	0.0010756	0.64489	0.00039777	616.8074136749044	57.764	0.46931	57.586	57.206	57.675	-0.17775					21	11	3	0	0	0	0.03519	1	6310	6310		110.12	14.086	1	216190	+		50405	26103	35107	35160	55797	55797					-0.00796371125056794
LWQRRRRPA	9	Unmodified	_LWQRRRRPA_					0	0	0		ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8694458007812	2	619.870697	1237.72684	0.45812	0.00028397	-2.7279	-0.001691	-2.2698	-0.001407	619.8688770335856	104.94	0.57281	104.78	104.47	105.04	-0.16485					46	20	3	0	0	0	0.98697	1	13060	13060		23.042	3.0457	1	167060			50406	15904	35108	35161	55798	55798					0.11748653699351053
LWQTKIERWLL	11	Unmodified	_LWQTKIERWLL_					0	0	0			REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF	REV__ENST00000499900.2_1_5:177045699-177046068:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.9588928222656	3	495.9574	1484.85037	0.30887	0.00015319	2.456	0.0012181	2.7649	0.0013713	495.9586267866749	102.2	1.5211	102.2	101.58	103.1	-0.0054398					89	35	3	0	0	0	1.09	1	13002	13002		14.086	1.6532	1	815360	+		50407	33901	35109	35162	55799	55799					0.12733847236472684
LWRHPWVIH	9	Unmodified	_LWRHPWVIH_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-2|GTDC1	REV__nc|ENSG00000121964|Q4AE62-2|GTDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3482055664062	2	622.345992	1242.67743	-0.64151	-0.00039924	2.8577	0.0017785	2.2162	0.0013793	622.347883637171	94.355	2.4043	94.233	93.41	95.814	-0.12215					127	55	3	0	0	0	1.0325	1	11695	11695		13.775	0.32129	1	273780	+		50408	36618	35110	35163	55800	55800					0.06579945690555178
LWRKQRLWKWW	11	Unmodified	_LWRKQRLWKWW_					0	0	0		chr12:54283132-54283827|520|59.59|0.0|22.51|+|1|HNRNPA1,HNRNPA1|1	chr12:54283132-54283827|520|59.59|0.0|22.51|+|1|HNRNPA1,HNRNPA1|1	chr12:54283132-54283827|520|59.59|0.0|22.51|+|1|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5132141113281	4	422.243944	1684.94667	-0.53732	-0.00022688	-2.7978	-0.0011813	-3.3351	-0.0014082	422.242524818016	32.313	0.1913	32.313	32.149	32.34	0					6	4	2	0	0	0	0.024902	1	2231	2231		1.4188	0	1	197730			50409	321	35111	35164	55801	55801					0.13159459587063793
LWRPWVWEWCR	11	Unmodified	_LWRPWVWEWCR_					0	0	0		ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9232177734375	4	404.954041	1615.78706	-0.93827	-0.00037995	-0.25704	-0.00010409	-1.1953	-0.00048404	405.205231892527	26.556	0.31535	26.393	26.307	26.622	-0.16331					10	7	2	0	0	0	0.024873	1	1365	1365		14.086	8.085	1	63009			50410	8583	35112	35165	55802	55802					0.0037958324758164963
LWSMTSDIY	9	Unmodified	_LWSMTSDIY_					0	0	0		ENSG00000153132|ENST00000325617|CLGN	ENSG00000153132|ENST00000325617|CLGN	ENSG00000153132|ENST00000325617|CLGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.259521484375	2	558.257525	1114.5005	0.2176	0.00012148	2.8064	0.0015667	3.024	0.0016882	558.2591032240977	79.482	1.4597	79.263	78.994	80.454	-0.21923					96	34	5	0	0	0	0.40179	1	9533	9533		65.803	5.5092	1	8248200			50411	6322	35113	35166	55803	55803					-0.05217315765253261
LWSSILGIY	9	Unmodified	_LWSSILGIY_					0	0	0		ENST00000272369.13_1_2:66798724-66798781:+|nuORF	ENST00000272369.13_1_2:66798724-66798781:+|nuORF	ENST00000272369.13_1_2:66798724-66798781:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2968139648438	2	526.294768	1050.57498	0.65859	0.00034662	-4.4795	-0.0023575	-3.8209	-0.0020109	526.2923189377228	58.526	1.174	58.285	58.044	59.218	-0.24165					51	28	3	0	0	0	0.26797	1	6429	6429		79.939	11.093	1	2504900			50412	11653	35114	35167	55804	55804					0.051718151084287456
LWSVEGGNKL	10	Unmodified	_LWSVEGGNKL_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.798828125	2	551.798206	1101.58186	-1.1723	-0.00064687	0.52027	0.00028709	-0.65202	-0.00035978	551.798444254382	55.5	0.85011	55.598	55.183	56.033	0.098015					69	22	4	0	0	0	0.57594	1	6055	6055		79.713	5.4575	1	2937900			50413	5846	35115	35168	55805	55805					0.03513127989003806
LWTLCILL	8	Unmodified	_LWTLCILL_					0	0	0			REV__ENSG00000173662|ENST00000333172|TAS1R1	REV__ENSG00000173662|ENST00000333172|TAS1R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7930908203125	2	487.790807	973.56706	0.37956	0.00018514	-0.77027	-0.00037573	-0.39071	-0.00019059	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.0572	1	10160	10160		28.254	1.4582	1	2659000	+		50414	26795	35116	35169	55806	55806					0.07921964587308139
LWTNSILS	8	Unmodified	_LWTNSILS_					0	0	0			REV__ENSG00000198092|ENST00000356291|TMPRSS11F	REV__ENSG00000198092|ENST00000356291|TMPRSS11F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2534484863281	2	467.255643	932.496732	-0.33778	-0.00015783	-4.3263	-0.0020215	-4.664	-0.0021793	467.25358777044187	34.277	1.1965	34.277	33.932	35.129	0					77	30	4	0	0	0	0.6536	1	2541	2541		71.296	5.4925	1	3569600	+		50415	28383	35117	35170	55807	55807					0.027783825231949777
LWTSRQRE	8	Unmodified	_LWTSRQRE_					0	0	0		CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant	CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant	CELSR3|p.D596Afs*94|1|0.68|ENSG00000008300|chr3:48660845-48660848|CTGT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2874755859375	2	538.285797	1074.55704	-1.1584	-0.00062354	3.9073	0.0021032	2.7489	0.0014797	538.2876712331554	21.498	1.6708	21.498	20.949	22.619	0					92	34	4	0	0	0	1.0338	1	679	679		31.955	1.4512	1	419060			50416	248	35118	35171	55808	55808					0.022744929062810115
LWVIFPGE	8	Unmodified	_LWVIFPGE_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH;ENST00000483727.5_1_20:33033173-33065666:+|nuORF	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.75006103515625	2	480.763104	959.511654	-0.28167	-0.00013541	-0.7901	-0.00037985	-1.0718	-0.00051527	480.7628814584772	30.718	0.28974	30.727	30.538	30.828	0.0086708					10	6	2	0	0	0	0.027866	1	1982	1982		52.299	7.7681	1	77038			50417	1645	35119	35172	55809	55809					0.030278743912049322
LWVIVRDGF	9	Unmodified	_LWVIVRDGF_					0	0	0		ENST00000522385.1_2_5:133541820-133561213:-|nuORF	ENST00000522385.1_2_5:133541820-133561213:-|nuORF	ENST00000522385.1_2_5:133541820-133561213:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.2537841796875	2	552.813659	1103.61277	-0.10571	-5.8435E-05	3.7873	0.0020937	3.6816	0.0020352	552.8162757681123	46.193	0.38784	46.193	45.885	46.273	0					14	10	2	0	0	0	0.024487	1	4559	4559		31.955	11.473	1	80999			50418	16026	35120	35173	55810	55810					0.06510326093916774
LWVLSPIF	8	Unmodified	_LWVLSPIF_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.300048828125	2	487.789121	973.56369	-0.90979	-0.00044379	0.31953	0.00015586	-0.59026	-0.00028792	487.7886192402579	58.325	0.42876	58.144	57.925	58.354	-0.18133					24	11	3	0	0	0	0.027866	1	6586	6586		46.766	6.1938	1	416150	+		50419	31488	35121	35174	55811	55811					0.07585037804960848
LWWAIVGLT	9	Unmodified	_LWWAIVGLT_					0	0	0		CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant;nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	CDC45|p.L497*|1|0.32|ENSG00000093009|chr22:19516570-19516570|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3165893554688	2	529.805303	1057.59605	-0.9924	-0.00052578	3.3877	0.0017948	2.3953	0.001269	530.3095087252551	81.664	1.577	81.664	81.258	82.835	0					47	37	2	0	0	0	0.024487	1	10212	10212		31.955	11.958	1	531260			50420	235	35122	35175	55812	55812					0.06955825207955968
LWWETRHA	8	Unmodified	_LWWETRHA_					0	0	0			REV__ENST00000401395.1_1_22:25465993-25466170:+|nuORF	REV__ENST00000401395.1_1_22:25465993-25466170:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.3045043945312	2	549.777608	1097.54066	0.39934	0.00021955	-3.7385	-0.0020553	-3.3392	-0.0018358	549.7759518697045	18.913	0.247	18.71	18.609	18.856	-0.20371					7	4	2	0	0	0	0.027866	1	367	367		38.806	0	1	8531	+		50421	31861	35123	35176	55813	55813					-0.004205882598171229
LWWKCSQE	8	Unmodified	_LWWKCSQE_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8182983398438	2	540.252577	1078.4906	-0.2148	-0.00011605	3.5628	0.0019248	3.348	0.0018088	540.2547404586637	74.676	0.17044	74.4	74.308	74.479	-0.27573					5	3	2	0	0	0	0.027866	1	8809	8809		47.916	16.386	1	66986			50422	3208	35124	35177	55814	55814					-0.04550458979974792
LWWSLQTSVW	10	Unmodified	_LWWSLQTSVW_					0	0	0			REV__ENST00000246957.9_1_16:3726078-3727601:-|nuORF	REV__ENST00000246957.9_1_16:3726078-3727601:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.8912658691406	3	435.892396	1304.65536	-0.079551	-3.4676E-05	-3.0627	-0.001335	-3.1422	-0.0013697	435.8910472316007	65.217	1.2589	64.966	64.626	65.885	-0.25112					87	30	4	0	0	0	0.88978	1	7417	7417		54.722	6.1208	1	4936400	+		50423	29478	35125	35178	55815	55815					0.015216764314573084
LYAAGVTLLI	10	Unmodified	_LYAAGVTLLI_					0	0	0			REV__nc|ENSG00000105371|Q14773|ICAM4	REV__nc|ENSG00000105371|Q14773|ICAM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2536010742188	2	517.318243	1032.62193	0.52008	0.00026905	2.3632	0.0012225	2.8833	0.0014916	517.3192312052015	68.23	0.80139	67.996	67.716	68.518	-0.23376					46	19	3	0	0	0	0.03519	1	7919	7919		31.955	18.996	1	801560	+		50424	36541	35126	35179	55816	55816					0.10692674659571821
LYAEASEKL	9	Unmodified	_LYAEASEKL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2711791992188	2	512.27149	1022.52843	-0.053609	-2.7462E-05	-1.1778	-0.00060337	-1.2314	-0.00063083	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	0.87448	1	13294	13294		34.173	3.6689	1	4944800			50425	4940	35127	35180	55817	55817					0.01806330486465413
LYAGDKLESN	10	Unmodified	_LYAGDKLESN_					0	0	0			REV__nc|ENSG00000232872|Q8IX95|CTAGE3P	REV__nc|ENSG00000232872|Q8IX95|CTAGE3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.7841796875	2	555.277303	1108.54005	0.23964	0.00013307	-1.0846	-0.00060228	-0.845	-0.00046921	555.2760383927055	40.87	0.18076	40.87	40.8	40.981	0					6	4	2	0	0	0	0.03519	1	3646	3646		65.157	22.819	1	72799	+		50426	37148	35128	35181	55818	55818					-0.009874724901919762
LYAIKQRQV	9	Unmodified	_LYAIKQRQV_					0	0	0			REV__ENST00000422005.7_2_14:80669058-80669397:-|nuORF	REV__ENST00000422005.7_2_14:80669058-80669397:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.8159790039062	2	559.837665	1117.66078	-0.0040359	-2.2594E-06	-3.7556	-0.0021025	-3.7596	-0.0021048	559.8353505619457	80.907	0.43864	80.669	80.369	80.808	-0.23784					20	10	3	0	0	0	0.024487	1	9676	9676		17.365	0	1	217910	+		50427	28714	35129	35182	55819	55819					0.10665400013931503
LYALHFIALA	10	Unmodified	_LYALHFIALA_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.7772827148438	2	566.331685	1130.64882	-0.61803	-0.00035001	-0.27387	-0.0001551	-0.89189	-0.00050511	566.8319361386258	46.61	0.27422	46.416	46.238	46.512	-0.19387					11	7	2	0	0	0	0.03519	1	4480	4480		26.796	6.7993	1	168190	+		50428	21300	35130	35183	55820	55820					0.08871783270728884
LYALHFIALA	10	Unmodified	_LYALHFIALA_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.331685	1130.64882	-1.1477	-0.00064997	-7.0322	-0.0039825	-8.1799	-0.0046325	566.3260117536461	46.556	0.7484	46.403	45.988	46.736	-0.15301	-0.037521	-0.003128	NaN	26.796	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436660	+		50429	21300	35130	35183							0.08871783270728884
LYALHFIALA	10	Unmodified	_LYALHFIALA_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	566.331685	1130.64882	-0.86262	-0.00048853	-4.3628	-0.0024708	-5.2254	-0.0029593	566.3257695823792	46.452	0.73843	46.503	46.096	46.834	0.051395	0.062559	-0.00010442	NaN	26.796	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408740	+		50430	21300	35130	35183							0.08871783270728884
LYALRTCRS	9	Unmodified	_LYALRTCRS_					0	0	0			REV__ENST00000587908.1_1_19:56831578-56832375:-|nuORF	REV__ENST00000587908.1_1_19:56831578-56832375:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.24755859375	2	541.792401	1081.57025	-1.198	-0.00064905	0.97911	0.00053047	-0.21885	-0.00011857	541.792559494363	89.935	0.74226	89.772	89.472	90.214	-0.1626					31	17	3	0	0	0	0.024438	1	10977	10977		44.377	31.565	1	104790	+		50431	35635	35131	35184	55821	55821					0.03272607694020735
LYAQNLYPQ	9	Unmodified	_LYAQNLYPQ_					0	0	0		ENST00000323037.4_1_7:30325436-30363317:+|nuORF	ENST00000323037.4_1_7:30325436-30363317:+|nuORF	ENST00000323037.4_1_7:30325436-30363317:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2702026367188	2	555.284931	1108.55531	-0.066201	-3.676E-05	-0.43267	-0.00024025	-0.49887	-0.00027701	555.2823056323069	78.261	0.65555	78.261	77.918	78.573	0					33	15	3	0	0	0	0.024487	1	9653	9653		24.203	0	1	114210			50432	12233	35132	35185	55822	55822					0.005374390976612631
LYASVGRPN	9	Unmodified	_LYASVGRPN_					0	0	0			REV__nc|ENSG00000211891|P01854|IGHE	REV__nc|ENSG00000211891|P01854|IGHE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.24981689453125	2	488.764166	975.513779	-0.61811	-0.00030211	1.6825	0.00082235	1.0644	0.00052025	488.76506419934094	25.789	0.71863	25.789	25.445	26.163	0					29	16	2	0	0	0	0.024412	1	1277	1277		40.573	0	1	117710	+		50433	37118	35133	35186	55823	55823					0.02504303129001073
LYATLHSGNHC	11	Carbamidomethyl (C)	_LYATLHSGNHC(Carbamidomethyl (C))_	LYATLHSGNHC(1)		LYATLHSGNHC(60)		0	1	0		nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-3|PRORP;nc|ENSG00000100890|O15091-4|PRORP	nc|ENSG00000100890|O15091-2|PRORP	nc|ENSG00000100890|O15091-2|PRORP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	636.7958374023438	2	636.793129	1271.5717	0.30633	0.00019507	4.2963	0.0027359	4.6026	0.0029309	636.7957908878211	83.805	0.76782	83.636	83.328	84.096	-0.16915					45	17	4	0	0	0	0.75995	1	10123	10123		60.118	13.661	1	862680			50434	2255	35134	35187	55824	55824	31				-0.053218030078824086
LYATWIKQT	9	Unmodified	_LYATWIKQT_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3093872070312	2	562.310949	1122.60735	0.16549	9.3058E-05	-3.8925	-0.0021888	-3.727	-0.0020957	562.308912493928	69.403	1.1227	69.11	68.713	69.836	-0.29291					91	28	4	0	0	0	0.28753	1	8328	8328		77.318	1.1479	1	6519400	+		50435	25826	35135	35188	55825	55825					0.05094602511439916
LYAVIVPLL	9	Unmodified	_LYAVIVPLL_					0	0	0		ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.6337890625	2	500.825704	999.636855	-0.1323	-6.626E-05	-0.46542	-0.0002331	-0.59772	-0.00029936	500.82525359929787	101.93	0.3969	101.93	101.73	102.13	0					11	8	2	0	0	0	0.024475	1	13077	13077		21.702	0	1	57539			50436	9384	35136	35189	55826	55826					0.13702166527559712
LYAVIVPLL	9	Unmodified	_LYAVIVPLL_					0	0	0		ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	500.825704	999.636855	0.31174	0.00015613	-0.86627	-0.00043385	-0.55453	-0.00027772	500.8249189375052	102.01	0.48333	102.01	101.67	102.15	-0.0054474	0.22037	-0.0003464	NaN	21.702	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44895			50437	9384	35136	35189							0.13702166527559712
LYAVIVPLL	9	Unmodified	_LYAVIVPLL_					0	0	0		ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.825704	999.636855	0.4681	0.00023444	-0.83762	-0.0004195	-0.36952	-0.00018506	500.8250865505431	101.81	0.70404	101.68	101.41	102.11	-0.13156	-0.10976	-0.0003177	NaN	21.702	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389390			50438	9384	35136	35189							0.13702166527559712
LYAVIVPLL	9	Unmodified	_LYAVIVPLL_					0	0	0		ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.825704	999.636855	0.1747	8.7492E-05	-0.64865	-0.00032486	-0.47396	-0.00023737	500.8252402459562	101.77	0.65559	101.65	101.41	102.07	-0.12646	-0.14107	-0.00012843	NaN	21.702	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434020			50439	9384	35136	35189							0.13702166527559712
LYAVIVPLL	9	Unmodified	_LYAVIVPLL_					0	0	0		ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	ENSG00000184933|ENST00000641196|OR6A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.825704	999.636855	-0.13807	-6.9149E-05	-0.15403	-7.714E-05	-0.2921	-0.00014629	500.8253833758288	101.85	0.65283	101.67	101.47	102.12	-0.17178	-0.11498	0.00036702	NaN	21.702	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	524300			50440	9384	35136	35189							0.13702166527559712
LYCINIIKN	9	Unmodified	_LYCINIIKN_					0	0	0		LRRIQ1|p.H55Y|1|0.11|ENSG00000133640|chr12:85040520-85040520|C/T|missense_variant	LRRIQ1|p.H55Y|1|0.11|ENSG00000133640|chr12:85040520-85040520|C/T|missense_variant	LRRIQ1|p.H55Y|1|0.11|ENSG00000133640|chr12:85040520-85040520|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.33154296875	2	547.307352	1092.60015	-0.31406	-0.00017189	-3.069	-0.0016797	-3.3831	-0.0018516	547.3056466680551	74.307	0.92203	74.049	73.78	74.702	-0.25887					46	21	3	0	0	0	0.024294	1	9042	9042		65.803	7.0212	1	500210			50441	17929	35137	35190	55827	55827					0.0575554663935236
LYDESCSSTL	10	Unmodified	_LYDESCSSTL_					0	0	0		nc|ENSG00000125851|P16519-2|PCSK2;nc|ENSG00000125851|P16519-3|PCSK2;ENSG00000125851|ENST00000262545|PCSK2	nc|ENSG00000125851|P16519-2|PCSK2	nc|ENSG00000125851|P16519-2|PCSK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8143310546875	2	559.239529	1116.46451	0.19663	0.00010996	-1.8716	-0.0010467	-1.675	-0.00093673	559.2381970143101	82.024	0.44518	81.914	81.765	82.21	-0.11006					12	10	2	0	0	0	0.03519	1	10201	10201		47.657	1.6851	1	110200			50442	4152	35138	35191	55828	55828					-0.08906817732781747
LYDLNHTLY	9	Unmodified	_LYDLNHTLY_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.7822265625	2	576.290214	1150.56587	-0.48574	-0.00027993	-1.1513	-0.00066351	-1.6371	-0.00094344	576.7903120202765	65.023	1.0611	64.788	64.529	65.59	-0.2345					29	25	2	0	0	0	0.02435	1	7481	7481		34.173	0	1	1001700			50443	3017	35139	35192	55829	55829					-0.0033857824789720325
LYDLNRVLL	9	Unmodified	_LYDLNRVLL_					0	0	0		BBS2|p.D653V|1|0.21|ENSG00000125124|chr16:56485691-56485691|T/A|missense_variant	BBS2|p.D653V|1|0.21|ENSG00000125124|chr16:56485691-56485691|T/A|missense_variant	BBS2|p.D653V|1|0.21|ENSG00000125124|chr16:56485691-56485691|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8143310546875	2	559.832049	1117.64954	-0.72659	-0.00040677	2.3836	0.0013344	1.657	0.00092767	559.8335593522876	81.495	1.0947	81.364	81.094	82.189	-0.13075					46	26	3	0	0	0	0.023817	1	10201	10201		82.305	26.801	1	248180			50444	177	35140	35193	55830	55830					0.09542577919796713
LYDLNRVLL	9	Unmodified	_LYDLNRVLL_					0	0	0		BBS2|p.D653V|1|0.21|ENSG00000125124|chr16:56485691-56485691|T/A|missense_variant	BBS2|p.D653V|1|0.21|ENSG00000125124|chr16:56485691-56485691|T/A|missense_variant	BBS2|p.D653V|1|0.21|ENSG00000125124|chr16:56485691-56485691|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.815185546875	2	559.832049	1117.64954	0.12659	7.0869E-05	2.2923	0.0012833	2.4189	0.0013542	559.832901099482	81.308	0.82286	81.079	80.656	81.479	-0.22891					40	19	3	0	0	0	0.023417	1	9783	9783		79.451	18.479	1	531770			50445	177	35140	35193	55831	55831					0.09542577919796713
LYDLRDLSL	9	Unmodified	_LYDLRDLSL_					0	0	0		nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-3|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.3054809570312	2	554.305864	1106.59717	-0.51082	-0.00028315	-0.055088	-3.0536E-05	-0.56591	-0.00031369	554.3056540450171	75.835	1.2779	75.563	75.227	76.505	-0.27266					79	31	4	0	0	0	0.53979	1	8980	8980		56.721	1.2168	1	4203200			50446	4544	35141	35194	55832	55832					0.04813994786195508
LYDPEAKQA	9	Unmodified	_LYDPEAKQA_					0	0	0		ENST00000569358.5_1_16:720470-721765:+|nuORF	ENST00000569358.5_1_16:720470-721765:+|nuORF	ENST00000569358.5_1_16:720470-721765:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2731323242188	2	517.761289	1033.50803	0.19312	9.9991E-05	2.7463	0.0014219	2.9394	0.0015219	517.761824815698	71.4	0.69243	71.138	70.867	71.559	-0.26199					27	16	3	0	0	0	0.024541	1	8316	8316		24.203	4.206	1	660280			50447	17002	35142	35195	55833	55833					-0.007388401733351202
LYDPPLAG	8	Unmodified	_LYDPPLAG_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2223205566406	2	423.223811	844.433069	-1.5201	-0.00064334	-1.2245	-0.00051824	-2.7446	-0.0011616	423.22313832743345	29.476	1.2353	29.476	29.149	30.384	0					62	30	4	0	0	0	0.95417	1	1825	1825		44.531	7.372	1	1619800	+		50448	28494	35143	35196	55834	55834					0.004630220860917689
LYDPPLAG	8	Unmodified	_LYDPPLAG_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.2221984863281	2	423.223811	844.433069	-0.1942	-8.2189E-05	-2.7517	-0.0011646	-2.9459	-0.0012468	423.2225094506578	29.183	1.3209	29.261	28.979	30.3	0.078344					62	32	3	0	0	0	0.88442	1	1735	1735		52.299	7.7681	1	1782200	+		50449	28494	35143	35196	55835	55835					0.004630220860917689
LYDPVESKFI	10	Unmodified	_LYDPVESKFI_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2182312011719	3	404.216657	1209.62814	-0.029885	-1.208E-05	3.9927	0.0016139	3.9628	0.0016018	404.21827196086645	57.238	1.0137	57.071	56.751	57.764	-0.1672					88	26	5	0	0	0	1.118	1	6269	6269		30.318	0	1	13924000			50450	6152	35144	35197	55836	55836					0.031711481004322195
LYDYDPRES	9	Unmodified	_LYDYDPRES_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;ENST00000540658.1_1_12:130881908-130892327:-|nuORF;nc|ENSG00000060709|O15034-3|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.2890625	2	579.259111	1156.50367	-0.22874	-0.0001325	-0.97585	-0.00056527	-1.2046	-0.00069777	579.2584634286226	79.342	0.58472	79.191	78.903	79.487	-0.15051					24	13	2	0	0	0	0.024495	1	9464	9464		42.396	8.2236	1	344500			50451	1238;18054	35145	35198	55837	55837					-0.06832349386900205
LYEAHHKTA	9	Unmodified	_LYEAHHKTA_					0	0	0			REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	REV__nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.2710571289062	2	535.274898	1068.53524	-0.78858	-0.00042211	-2.5476	-0.0013637	-3.3362	-0.0017858	535.2732196524197	104.01	0.89228	103.88	103.38	104.27	-0.12928					35	25	3	0	0	0	0.85329	1	12962	12962		35.618	1.4457	1	167070	+		50452	22675	35146	35199	55838	55838					0.0037168815772474773
LYEAIRDF	8	Unmodified	_LYEAIRDF_					0	0	0		ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.771484375	2	513.766374	1025.5182	0.89557	0.00046012	-0.53985	-0.00027736	0.35572	0.00018276	513.764977268786	19.875	0.3455	19.641	19.424	19.769	-0.23345					9	6	2	0	0	0	0.027866	1	454	454		33.516	3.674	1	7745.4			50453	8331	35147	35200	55839	55839					0.0064576755189591495
LYECNECGKA	10	Unmodified	_LYECNECGKA_					0	0	0		ENSG00000183309|ENST00000526926|ZNF623;nc|ENSG00000183309|O75123|ZNF623;nc|ENSG00000274349|Q5TYW1-2|ZNF658;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF;ENSG00000274349|ENST00000621410|ZNF658;ENST00000377618.4_9:39444499-39464431:-|nuORF	ENSG00000183309|ENST00000526926|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.2371215820312	2	565.236267	1128.45798	-0.21454	-0.00012126	-0.097155	-5.4916E-05	-0.31169	-0.00017618	565.2361133968152	46.238	0.79459	45.977	45.739	46.534	-0.26118					37	20	3	0	0	0	0.85955	1	4434	4434		56.721	5.3856	1	1561100			50454	9214	35148	35201	55840	55840					-0.10111034165151978
LYEHKIALLL	10	Unmodified	_LYEHKIALLL_					0	0	0		ENST00000480697.6_1_10:5136636-5139787:+|nuORF	ENST00000480697.6_1_10:5136636-5139787:+|nuORF	ENST00000480697.6_1_10:5136636-5139787:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.568359375	3	404.916541	1211.72779	0.46661	0.00018894	-2.843	-0.0011512	-2.3764	-0.00096225	404.91521875153484	42.432	0.69814	42.3	42.082	42.78	-0.13219					34	19	3	0	0	0	0.03519	1	3875	3875		33.922	9.6898	1	322190			50455	15209	35149	35202	55841	55841					0.13040010505051214
LYEIHKEFY	9	Unmodified	_LYEIHKEFY_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3138427734375	2	621.313689	1240.61282	0.018917	1.1754E-05	-0.30479	-0.00018937	-0.28587	-0.00017762	621.3134783770568	66.633	3.4513	66.385	66.061	69.512	-0.24839					161	90	2	0	0	0	0.22754	1	7630	7630		85.359	0	1	29011000			50456	9572	35150	35203	55842	55842					0.002142813032378399
LYEIHKEFY	9	Unmodified	_LYEIHKEFY_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3141479492188	2	621.313689	1240.61282	-0.33526	-0.0002083	0.0641	3.9826E-05	-0.27116	-0.00016847	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.22754	1	7618	7618		85.359	0	1	26099000			50457	9572	35150	35203	55843	55843					0.002142813032378399
LYEMILKL	8	Unmodified	_LYEMILKL_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MSMS	OPSCC_40_ClassI_Rep-1	4	511.8024597167969	2	511.801371	1021.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.853	1	18.697	18.197	19.197	-0.15637								0	0	0	0.92657	1	354	354		25.45	4.5032	1		+		50458	20990	35151	35204	55844	55844					0.07825929896159778
LYEPTNFSL	9	Unmodified	_LYEPTNFSL_					0	0	0			REV__OBSCN-CASZ1|1|fusion	REV__OBSCN-CASZ1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2630004882812	2	542.27149	1082.52843	0.0088918	4.8218E-06	-0.20085	-0.00010891	-0.19196	-0.00010409	542.271431920898	74.358	0.55708	74.095	73.889	74.446	-0.26326					20	12	2	0	0	0	0.024374	1	8816	8816		40.778	5.1599	1	510300	+		50459	37301	35152	35205	55845	55845					-0.009536695135011541
LYEPTNFSL	9	Unmodified	_LYEPTNFSL_					0	0	0			REV__OBSCN-CASZ1|1|fusion	REV__OBSCN-CASZ1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.27149	1082.52843	0.91065	0.00049382	-1.5623	-0.0008472	-0.65167	-0.00035338	542.2709115687882	74.021	0.72275	74.021	73.828	74.551	0	-0.045985	-0.0015356	NaN	37.812	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726580	+		50460	37301	35152	35205							-0.009536695135011541
LYEPTNFSL	9	Unmodified	_LYEPTNFSL_					0	0	0			REV__OBSCN-CASZ1|1|fusion	REV__OBSCN-CASZ1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.27149	1082.52843	-0.33995	-0.00018434	0.33807	0.00018332	-0.0018794	-1.0191E-06	542.2715168428342	74.325	0.59067	74.066	73.86	74.451	-0.25887	-0.0011964	0.00052549	NaN	37.812	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620490	+		50461	37301	35152	35205							-0.009536695135011541
LYEPTNFSL	9	Unmodified	_LYEPTNFSL_					0	0	0			REV__OBSCN-CASZ1|1|fusion	REV__OBSCN-CASZ1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.27149	1082.52843	-1.2258	-0.00066473	2.7544	0.0014936	1.5286	0.0008289	542.272079102852	74.066	0.8537	74.076	73.753	74.607	0.0096512	0.0085241	0.0031461	NaN	37.812	40	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698070	+		50462	37301	35152	35205							-0.009536695135011541
LYEPTNFSL	9	Unmodified	_LYEPTNFSL_					0	0	0			REV__OBSCN-CASZ1|1|fusion	REV__OBSCN-CASZ1|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.27149	1082.52843	-0.26364	-0.00014296	0.66301	0.00035953	0.39937	0.00021657	542.2714100520172	74.215	1.047	74.032	73.889	74.936	-0.18279	-0.034852	0.0008779	NaN	37.812	35	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396040	+		50463	37301	35152	35205							-0.009536695135011541
LYETFSYY	8	Unmodified	_LYETFSYY_					0	0	0			REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF	REV__ENST00000351773.7_1_10:38407933-38408194:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2440185546875	2	543.244941	1084.47533	-0.35769	-0.00019432	0.38751	0.00021051	0.029815	1.6197E-05	543.2446333116471	67.232	3.2131	67.008	66.714	69.927	-0.22374					160	78	4	0	0	0	0.85409	1	7746	7746		54.765	5.3231	1	2465700	+		50464	30734	35153	35206	55846	55846					-0.06353047296170189
LYFFTLNN	8	Unmodified	_LYFFTLNN_					0	0	0		ENST00000228740.6_1_12:96407622-96408686:-|nuORF	ENST00000228740.6_1_12:96407622-96408686:-|nuORF	ENST00000228740.6_1_12:96407622-96408686:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8135986328125	2	516.263468	1030.51238	-0.7115	-0.00036732	-3.0886	-0.0015946	-3.8001	-0.0019619	516.2617388291358	60.725	0.5233	60.512	60.196	60.719	-0.21339					21	13	2	0	0	0	0.027866	1	6937	6937		24.203	0	1	349070			50465	11221	35154	35207	55847	55847					-0.0016533095977138146
LYFGKKCHY	9	Unmodified	_LYFGKKCHY_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.2593994140625	2	579.791869	1157.56919	-0.9625	-0.00055805	2.8559	0.0016558	1.8934	0.0010978	579.7933402493253	42.841	0.46292	42.604	42.416	42.879	-0.23736					23	11	3	0	0	0	0.024517	1	3859	3859		35.201	4.6971	1	238860	+		50466	27541	35155	35208	55848	55848					-0.0032960667488168838
LYFHFLLF	8	Unmodified	_LYFHFLLF_					0	0	0			REV__ENST00000291386.3_1_1:1477249-1477432:-|nuORF	REV__ENST00000291386.3_1_1:1477249-1477432:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.300537109375	2	550.302396	1098.59024	0.19447	0.00010702	-3.8508	-0.0021191	-3.6563	-0.0020121	550.3001013360113	85.656	1.1148	85.461	85.088	86.202	-0.19508					47	25	3	0	0	0	0.8525	1	10379	10379		54.895	4.87	1	567280	+		50467	29942	35156	35209	55849	55849					0.04488726696285994
LYFLDDTAKM	10	Unmodified	_LYFLDDTAKM_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2054138183594	3	406.20213	1215.58456	0.74156	0.00030122	3.4024	0.001382	4.1439	0.0016833	406.203505075551	22.664	1.1631	22.475	21.911	23.074	-0.18894					34	24	2	0	0	0	1.1266	1	842	842		29.17	2.1227	1	335590			50468	5397	35157	35210	55850	55850					-0.014607846683929893
LYFLDDTAKM	10	Unmodified	_LYFLDDTAKM_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	406.20213	1215.58456	0.73798	0.00029977	3.3698	0.0013688	4.1078	0.0016686	406.20350091241636	22.507	0.88145	22.507	22.012	22.894	0	0.0042138	0.00027337	NaN	29.17	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116870			50469	5397	35157	35210							-0.014607846683929893
LYFLDDTAKM	10	Unmodified	_LYFLDDTAKM_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	406.20213	1215.58456	0.21685	8.8084E-05	3.8554	0.0015661	4.0723	0.0016542	406.20345475926564	22.574	1.0275	22.498	21.939	22.966	-0.075296	-0.0045127	0.00086518	NaN	29.17	35	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103640			50470	5397	35157	35210							-0.014607846683929893
LYFLDDTAKM	10	Unmodified	_LYFLDDTAKM_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	406.20213	1215.58456	0.67216	0.00027303	2.9723	0.0012073	3.6444	0.0014804	406.20322533586204	22.391	0.61723	22.465	22.22	22.837	0.073954	-0.037512	-0.00021108	NaN	29.17	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104480			50471	5397	35157	35210							-0.014607846683929893
LYFNGVSFL	9	Unmodified	_LYFNGVSFL_					0	0	0			REV__ENSG00000175548|ENST00000308742|ALG10B	REV__ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.277099609375	2	530.279118	1058.54368	-0.59152	-0.00031367	-2.9509	-0.0015648	-3.5425	-0.0018785	530.277414161755	57.739	2.372	57.739	57.148	59.52	0					154	63	4	0	0	0	0.25032	1	6483	6483		82.305	12.677	1	56702000	+		50472	26959	35158	35211	55851	55851					0.01675242074338712
LYFQVLFLT	9	Unmodified	_LYFQVLFLT_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.296875	2	572.326068	1142.63758	-2.0051	-0.0011475	0.033436	1.9136E-05	-1.9716	-0.0011284	572.3252346836227	64.853	0.14433	64.853	64.8	64.944	0					5	3	2	0	0	0	0.024412	1	7667	7667		50.025	19.521	1	53611			50473	2440	35159	35212	55852	55852					0.0719696117660078
LYFQVLFLT	9	Unmodified	_LYFQVLFLT_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	572.296630859375	2	572.326068	1142.63758	-1.4307	-0.00081883	3.6748	0.0021032	2.2441	0.0012844	572.3286293412226	65.118	0.15431	64.855	64.796	64.95	-0.2626					5	3	2	0	0	0	0.024294	1	7667	7667		65.803	28.644	1	44032			50474	2440	35159	35212	55853	55853					0.0719696117660078
LYFRGSVM	8	Unmodified	_LYFRGSVM_					0	0	0			REV__ENST00000542411.5_1_11:61123996-61125228:-|nuORF	REV__ENST00000542411.5_1_11:61123996-61125228:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7770690917969	2	486.752213	971.489873	-1.3892	-0.0006762	-3.4435	-0.0016761	-4.8327	-0.0023523	486.75053603983577	29.753	0.68308	29.831	29.45	30.133	0.078346					31	16	2	0	0	0	0.027866	1	1804	1804		40.573	0	1	221700	+		50475	34665	35160	35213	55854	55854					0.0029874637098146195
LYFSREGNR	9	Unmodified	_LYFSREGNR_					0	0	0		ENST00000304677.2_1_14:21250498-21250600:+|nuORF	ENST00000304677.2_1_14:21250498-21250600:+|nuORF	ENST00000304677.2_1_14:21250498-21250600:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.3101806640625	2	571.291079	1140.56761	0.26214	0.00014976	-3.774	-0.0021561	-3.5119	-0.0020063	571.2912900970297	75.164	0.12659	74.888	74.804	74.931	-0.27573					4	2	2	0	0	0	0.024477	1	8865	8865		35.618	5.3006	1	28161			50476	11979	35161	35214	55855	55855					0.0029447556071318104
LYFVLKELCII	11	Unmodified	_LYFVLKELCII_					0	0	0		VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.93267822265625	3	451.933204	1352.77778	0.64988	0.0002937	-1.8901	-0.0008542	-1.2402	-0.0005605	451.93228283212176	98.767	1.9693	98.763	97.93	99.899	-0.0038834					182	45	5	0	0	0	1.0532	1	12623	12623		24.232	4.2013	1	1384500			50477	38143	35162	35215	55856	55856					0.11550377118715005
LYFVLKELCII	11	Unmodified	_LYFVLKELCII_					0	0	0		VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9328918457031	3	451.933204	1352.77778	0.91985	0.00041571	-2.1466	-0.00097011	-1.2267	-0.0005544	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0712	1	12304	12304		19.263	3.342	1	1435400			50478	38143	35162	35215	55857	55857					0.11550377118715005
LYFVLKELCII	11	Unmodified	_LYFVLKELCII_					0	0	0		VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	VKORC1L1|p.F138L|1|0.46|ENSG00000196715|chr7:65954183-65954183|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.93267822265625	3	451.933204	1352.77778	1.0325	0.00046661	-2.2291	-0.0010074	-1.1967	-0.00054081	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0563	1	12263	12263		23.378	0	1	1299700			50479	38143	35162	35215	55858	55858					0.11550377118715005
LYGAVGPGTL	10	Unmodified	_LYGAVGPGTL_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.26348876953125	2	474.263468	946.512382	0.66579	0.00031576	-0.40764	-0.00019333	0.25814	0.00012243	474.2631458221152	78.044	0.8884	77.802	77.49	78.378	-0.24232					57	20	4	0	0	0	0.91051	1	9305	9305		53.351	5.4358	1	2004700	+		50480	23835	35163	35216	55859	55859					0.03698669040261393
LYGDLHTFN	9	Unmodified	_LYGDLHTFN_					0	0	0			REV__ENSG00000127415|ENST00000514224|IDUA	REV__ENSG00000127415|ENST00000514224|IDUA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.26123046875	2	540.261456	1078.50836	-0.97718	-0.00052793	1.0259	0.00055425	0.04871	2.6316E-05	540.2619343631019	61.944	0.86811	61.687	61.383	62.251	-0.25725					66	21	4	0	0	0	0.62163	1	6948	6948		51.335	1.3109	1	5078300	+		50481	22929	35164	35217	55860	55860					-0.027754204534858218
LYGELLETCII	11	Unmodified	_LYGELLETCII_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.2378845214844	3	422.893185	1265.65773	-0.69758	-0.000295	-0.14541	-6.1491E-05	-0.84299	-0.00035649	422.89303887273286	32.888	0.63388	32.895	32.589	33.223	0.0066261					24	16	2	0	0	0	0.024735	1	2302	2302		38.754	15.376	1	167400			50482	2905	35165	35218	55861	55861					0.03552344054264722
LYGIICALP	9	Unmodified	_LYGIICALP_					0	0	0			REV__ENST00000478602.1_1_2:42946162-42950180:+|nuORF	REV__ENST00000478602.1_1_2:42946162-42950180:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2625427246094	2	481.772614	961.530675	-0.415	-0.00019993	4.3245	0.0020834	3.9095	0.0018835	481.77463937222154	37.537	0.99805	37.474	36.904	37.902	-0.063389					41	27	2	0	0	0	0.024389	1	3128	3128		39.021	8.5179	1	735680	+		50483	20225	35166	35219	55862	55862					0.048370876905892146
LYGKVDLVQ	9	Unmodified	_LYGKVDLVQ_					0	0	0			REV__ENSG00000116688|ENST00000235329|MFN2	REV__ENSG00000116688|ENST00000235329|MFN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2769775390625	2	517.797675	1033.5808	-0.23749	-0.00012297	-0.35193	-0.00018223	-0.58942	-0.0003052	517.7973122151861	62.047	0.58547	61.82	61.534	62.119	-0.22663					26	15	2	0	0	0	0.024457	1	7205	7205		45.952	0	1	477010	+		50484	22291	35167	35220	55863	55863					0.06534913620089355
LYGKYCNY	8	Unmodified	_LYGKYCNY_					0	0	0			REV__ENSG00000187764|ENST00000422704|SEMA4D	REV__ENSG00000187764|ENST00000422704|SEMA4D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2359008789062	2	512.233853	1022.45315	0.016275	8.3365E-06	2.2004	0.0011271	2.2167	0.0011355	512.2349931681874	57.601	0.677	57.41	57.112	57.789	-0.19018					49	17	4	0	0	0	0.91239	1	6283	6283		50.025	4.0523	1	3535000	+		50485	27970	35168	35221	55864	55864					-0.05717550245617531
LYGPGMEGVL	10	Unmodified	_LYGPGMEGVL_					0	0	0			REV__ENST00000586136.5_1_19:30097284-30104129:+|nuORF	REV__ENST00000586136.5_1_19:30097284-30104129:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2973022460938	2	518.26261	1034.51067	-0.77325	-0.00040075	3.1994	0.0016581	2.4262	0.0012574	518.2621764795463	102.64	0.45901	102.64	102.35	102.81	0					17	10	3	0	0	0	0.03519	1	13128	13128		73.975	9.7675	1	143310	+		50486	35589	35169	35222	55865	55865					-0.0052070804001687065
LYGTQKMIE	9	Unmodified	_LYGTQKMIE_					0	0	0			REV__ENSG00000076984|ENST00000397979|MAP2K7	REV__ENSG00000076984|ENST00000397979|MAP2K7	MSMS	OPSCC_40_ClassI_Rep-3	6	541.7801513671875	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.692	1	80.546	80.046	81.046	-0.146								0	0	0	0.47068	1	9670	9670		56.721	3.3696	1		+		50487	20577	35170	35223	55866	55866					0.010269635057284177
LYGTVQLSH	9	Unmodified	_LYGTVQLSH_					0	0	0			REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	REV__ENST00000489940.5_3_X:48367823-48369697:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.290283203125	2	509.271824	1016.5291	-0.24458	-0.00012456	0.53038	0.00027011	0.28581	0.00014555	509.2718328758721	52.004	0.54596	51.885	51.54	52.086	-0.11875					20	14	2	0	0	0	0.024374	1	5408	5408		49.442	0.23076	1	197310	+		50488	33687	35171	35224	55867	55867					0.021491699262014663
LYGVSGHLI	9	Unmodified	_LYGVSGHLI_					0	0	0			REV__ENSG00000125686|ENST00000300651|MED1	REV__ENSG00000125686|ENST00000300651|MED1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7715148925781	2	479.77146	957.528367	-0.30218	-0.00014498	0.098582	4.7297E-05	-0.2036	-9.7682E-05	479.77146013576436	74.783	1.3393	74.794	74.095	75.435	0.010376					91	32	5	0	0	0	0.52323	1	9083	9083		57.811	1.0902	1	7925300	+		50489	22834	35172	35225	55868	55868					0.047903752771503605
LYHFSLESL	9	Unmodified	_LYHFSLESL_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.7841796875	2	554.787307	1107.56006	0.20451	0.00011346	-4.1098	-0.0022801	-3.9053	-0.0021666	554.7849573287256	41.032	0.99486	41.032	40.657	41.652	0					50	27	2	0	0	0	0.18915	1	3646	3646		90.777	11.064	1	4878100	+		50490	22909	35173	35226	55869	55869					0.010583232404314913
LYHFSLESL	9	Unmodified	_LYHFSLESL_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.7846069335938	2	554.787307	1107.56006	0.060951	3.3815E-05	-3.7964	-0.0021062	-3.7354	-0.0020724	554.7851224582766	41.179	0.95869	41.056	40.653	41.612	-0.12317					50	26	2	0	0	0	0.074956	1	3652	3652		119.56	22.084	1	4631800	+		50491	22909	35173	35226	55870	55870					0.010583232404314913
LYHFSLESL	9	Unmodified	_LYHFSLESL_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.7843627929688	2	554.787307	1107.56006	-0.011253	-6.243E-06	-3.7641	-0.0020883	-3.7754	-0.0020945	554.7851698558104	41.19	0.91654	41.213	40.864	41.781	0.023003					46	25	2	0	0	0	0.040175	1	3618	3618		133.47	44.826	1	4347500	+		50492	22909	35173	35226	55871	55871					0.010583232404314913
LYHHCVIN	8	Unmodified	_LYHHCVIN_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7896728515625	2	499.747462	997.480371	-0.0034369	-1.7176E-06	-1.1263	-0.00056289	-1.1298	-0.00056461	499.74671395159385	70.557	0.77902	70.569	70.347	71.126	0.012421					35	18	3	0	0	0	0.027866	1	8423	8423		29.842	8.1558	1	790670			50493	1009	35174	35227	55872	55872					-0.0184702191455699
LYHMYLASR	9	Unmodified	_LYHMYLASR_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.7914428710938	2	577.294776	1152.575	-1.0465	-0.00060417	-0.94	-0.00054266	-1.9865	-0.0011468	577.2937759773888	82.17	0.72939	82.03	81.443	82.173	-0.14014					22	16	2	0	0	0	0.024292	1	9808	9808		49.442	10.635	1	173270	+		50494	21945	35175	35228	55873	55873					0.00481491836785608
LYHMYLASR	9	Unmodified	_LYHMYLASR_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.294776	1152.575	-1.3156	-0.00075948	6.7598	0.0039024	5.4442	0.0031429	577.2984827172745	82.3	0.84689	82.3	82.031	82.878	0	0.1087	0.0023991	NaN	40.778	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118570	+		50495	21945	35175	35228							0.00481491836785608
LYHMYLASR	9	Unmodified	_LYHMYLASR_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	577.294776	1152.575	1.1017	0.00063603	4.4934	0.002594	5.5952	0.0032301	577.2973344050073	82.349	0.92899	82.239	81.881	82.81	-0.11006	0.047342	-0.00021763	NaN	40.778	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116480	+		50496	21945	35175	35228							0.00481491836785608
LYHMYLASR	9	Unmodified	_LYHMYLASR_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.294776	1152.575	-0.64259	-0.00037097	6.0029	0.0034654	5.3603	0.0030945	577.2982868195694	82.141	0.79944	82.167	81.859	82.658	0.025711	-0.024846	0.0015252	NaN	40.778	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135440	+		50497	21945	35175	35228							0.00481491836785608
LYHMYLASR	9	Unmodified	_LYHMYLASR_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.294776	1152.575	-0.28769	-0.00016608	12.668	0.0073133	12.381	0.0071473	577.301771356996	82.403	0.17371	82.222	82.114	82.287	-0.18079	0.030502	0.009221	NaN	40.778	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49674	+		50498	21945	35175	35228							0.00481491836785608
LYIERLKTQN	10	Unmodified	_LYIERLKTQN_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	639.3636474609375	2	639.364244	1276.71394	-1.4828	-0.00094804	-0.1896	-0.00012122	-1.6724	-0.0010693	639.3639199334042	110.13	0.48322	110	109.83	110.31	-0.12525					62	19	4	0	0	0	1.1197	2	13532	13532;13552		25.574	4.6271	1	504380	+		50499	28027	35176	35229	55874;55875	55874					0.08664733005957714
LYIGGDDEPQ	10	Unmodified	_LYIGGDDEPQ_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7557373046875	2	553.753661	1105.49277	0.61112	0.00033841	3.1212	0.0017284	3.7324	0.0020668	553.755334147411	22.588	2.6047	22.386	22.097	24.702	-0.20199					99	58	4	0	0	0	1.1267	1	820	820		29.15	1.0681	1	1088400			50500	8463	35177	35230	55876	55876					-0.055757517611937146
LYIGTDLTQ	9	Unmodified	_LYIGTDLTQ_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF;nc|ENSG00000204764|Q9H2T7-2|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2716674804688	2	512.27149	1022.52843	-0.064022	-3.2797E-05	-0.75707	-0.00038782	-0.82109	-0.00042062	512.2708564123549	104.09	1.5978	104.09	103.57	105.16	0.0031357					89	45	3	0	0	0	0.82115	1	13369	13369		37.812	0.65241	1	332150			50501	10376	35178	35231	55877	55877					0.01806330486465413
LYIIQFEPN	9	Unmodified	_LYIIQFEPN_					0	0	0			REV__ENST00000436986.5_2_7:42957113-42957161:-|nuORF	REV__ENST00000436986.5_2_7:42957113-42957161:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8023681640625	2	568.802957	1135.59136	-0.38413	-0.0002185	-0.2841	-0.0001616	-0.66824	-0.00038009	568.8027695833946	81.635	1.6138	81.504	81.176	82.789	-0.13075					140	38	6	0	0	0	0.096521	1	10199	10199		111.65	5.2331	1	5479500	+		50502	32471	35179	35232	55878	55878					0.028988962745188473
LYILGDKAQL	10	Unmodified	_LYILGDKAQL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3295288085938	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0616	2	11237	11128;11237		37.812	1.3648	1	4298500			50503	2157	35180	35233	55879;55880	55880					0.0881915819995811
LYILGDKAQL	10	Unmodified	_LYILGDKAQL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3297119140625	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.0393	2	11006	11006;11200		40.778	8.8233	1	4134200			50504	2157	35180	35233	55881;55882	55881					0.0881915819995811
LYILGDKAQL	10	Unmodified	_LYILGDKAQL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3295288085938	2	567.331882	1132.64921	-0.57331	-0.00032526	-2.9862	-0.0016942	-3.5595	-0.0020194	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.0992	1	10881	10881		32.812	2.4947	1	5699600			50505	2157	35180	35233	55883	55883					0.0881915819995811
LYINEDNVD	9	Unmodified	_LYINEDNVD_					0	0	0		ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7728881835938	2	547.753661	1093.49277	-0.4513	-0.0002472	1.8484	0.0010124	1.3971	0.00076525	547.75419495139	80.841	0.86172	80.695	80.409	81.271	-0.146					56	20	4	0	0	0	0.023417	1	9717	9717		49.442	7.0454	1	491730			50506	17779	35181	35234	55884	55884					-0.05023751761177664
LYINEDNVD	9	Unmodified	_LYINEDNVD_					0	0	0		ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.753661	1093.49277	-0.94254	-0.00051628	1.2908	0.00070703	0.34823	0.00019075	547.7542367304853	80.768	1.0486	80.768	80.457	81.506	0	0.030403	1.9661E-06	NaN	49.442	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1028600			50507	17779	35181	35234							-0.05023751761177664
LYINEDNVD	9	Unmodified	_LYINEDNVD_					0	0	0		ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.753661	1093.49277	-1.4291	-0.0007828	1.7566	0.00096218	0.32749	0.00017939	547.7545993301577	80.948	0.80406	80.796	80.514	81.318	-0.15169	0.058672	0.00051227	NaN	49.442	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002300			50508	17779	35181	35234							-0.05023751761177664
LYINEDNVD	9	Unmodified	_LYINEDNVD_					0	0	0		ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	ITPR3|p.G1935D|1|0.21|ENSG00000096433|chr6:33686189-33686189|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	547.753661	1093.49277	-1.5713	-0.00086068	1.8971	0.0010392	0.32584	0.00017848	547.7546148657636	80.79	0.84112	80.814	80.488	81.329	0.023903	0.076974	0.00066624	NaN	49.442	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	865190			50509	17779	35181	35234							-0.05023751761177664
LYINNELQ	8	Unmodified	_LYINNELQ_					0	0	0		ENSG00000187122|ENST00000266058|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.76470947265625	2	503.763832	1005.51311	-0.019119	-9.6314E-06	-0.41326	-0.00020819	-0.43238	-0.00021782	503.7635574334774	35.033	1.5652	34.817	34.006	35.571	-0.21556					111	39	5	0	0	0	0.93274	1	2672	2672		47.916	0.25827	1	19901000			50510	9609	35182	35235	55885	55885					0.010574636892783928
LYINNELQ	8	Unmodified	_LYINNELQ_					0	0	0		ENSG00000187122|ENST00000266058|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	ENSG00000187122|ENST00000266058|SLIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7641906738281	2	503.763832	1005.51311	-0.71814	-0.00036177	0.22827	0.00011499	-0.48987	-0.00024678	503.7639138497815	34.926	1.2108	34.74	34.241	35.452	-0.18675					95	30	5	0	0	0	0.46709	2	2589	2589;2601		88.643	3.2834	1	21083000			50511	9609	35182	35235	55886;55887	55886					0.010574636892783928
LYIPHHITI	9	Unmodified	_LYIPHHITI_					0	0	0			REV__ENSG00000009694|ENST00000371130|TENM1	REV__ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.2614135742188	2	553.821484	1105.62842	-0.6662	-0.00036896	-0.56361	-0.00031214	-1.2298	-0.0006811	553.8211908236544	44.895	0.47395	44.643	44.391	44.865	-0.25252					26	11	3	0	0	0	0.024412	1	4231	4231		17.365	0	1	202640	+		50512	19893	35183	35236	55888	55888					0.07982612610953765
LYIQLWFA	8	Unmodified	_LYIQLWFA_					0	0	0			REV__ENSG00000203733|ENST00000450456|GJE1	REV__ENSG00000203733|ENST00000450456|GJE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.7689819335938	2	527.292028	1052.5695	-1.1359	-0.00059895	-0.38707	-0.0002041	-1.523	-0.00080305	527.2914806484094	48.489	0.69692	48.213	47.595	48.292	-0.27598					24	18	2	0	0	0	0.027866	1	4775	4775		28.254	7.7724	1	265160	+		50513	28542	35184	35237	55889	55889					0.045321363166067385
LYISEAGLSV	10	Unmodified	_LYISEAGLSV_					0	0	0			REV__ENST00000309859.8_1_16:23478376-23478613:-|nuORF	REV__ENST00000309859.8_1_16:23478376-23478613:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2876586914062	2	526.28714	1050.55973	-1.0054	-0.00052912	0.4938	0.00025988	-0.51159	-0.00026924	526.2873767369624	82.342	1.3142	82.342	81.909	83.223	0					75	30	4	0	0	0	0.3934	1	10305	10305		99.375	9.0051	1	7235600	+		50514	30169	35185	35238	55890	55890					0.03646903520575506
LYISTSPAR	9	Unmodified	_LYISTSPAR_					0	0	0			REV__ENST00000536017.1_1_11:64053906-64055433:+|nuORF	REV__ENST00000536017.1_1_11:64053906-64055433:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2979431152344	2	504.279649	1006.54475	0.16581	8.3613E-05	-0.41617	-0.00020987	-0.25037	-0.00012626	504.2795202766916	36.831	0.23892	36.638	36.496	36.735	-0.193					8	5	2	0	0	0	0.024477	1	2896	2896		35.618	0	1	59127	+		50515	26760	35186	35239	55891	55891					0.04173456443231771
LYITRKQVD	9	Unmodified	_LYITRKQVD_					0	0	0			REV__ENST00000420833.5_1_7:12258097-12270062:+|nuORF	REV__ENST00000420833.5_1_7:12258097-12270062:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.282958984375	2	568.327131	1134.63971	0.2479	0.00014089	1.911	0.001086	2.1589	0.0012269	568.3282844937097	82.114	0.72675	81.925	81.552	82.279	-0.18936					34	16	3	0	0	0	0.024436	1	9844	9844		23.042	0	1	180080	+		50516	21621	35187	35240	55892	55892					0.07777389914440391
LYIYYMLGL	9	Unmodified	_LYIYYMLGL_					0	0	0			REV__ENST00000599564.5_2_19:35517288-35517357:+|nuORF	REV__ENST00000599564.5_2_19:35517288-35517357:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.8080444335938	2	574.806654	1147.59875	0.38072	0.00021884	2.315	0.0013307	2.6957	0.0015495	574.8078090614657	18.028	0.83729	17.897	17.613	18.45	-0.13147					34	16	4	0	0	0	0.93795	1	238	238		29.842	1.9593	1	131010	+		50517	35830	35188	35241	55893	55893					0.030859125505912743
LYKAEGVK	8	Unmodified	_LYKAEGVK_					0	0	0		ENSG00000148296|ENST00000372022|SURF6;ENST00000468290.1_1_9:136198707-136199617:-|nuORF	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.2374267578125	2	454.26601	906.517468	-0.25736	-0.00011691	-0.16719	-7.5947E-05	-0.42455	-0.00019286	454.2657695807202	43.556	0.45363	43.444	43.355	43.809	-0.11253					18	11	2	0	0	0	0.027866	1	3997	3997		30.504	14.03	1	351840			50518	6015	35189	35242	55894	55894					0.06046972902856851
LYKDCIQVL	9	Unmodified	_LYKDCIQVL_					0	0	0			REV__ENSG00000169221|ENST00000409939|TBC1D10B	REV__ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.326171875	2	547.79936	1093.58417	0.099191	5.4337E-05	2.5378	0.0013902	2.637	0.0014445	548.3043222370701	81.652	0.2507	81.458	81.254	81.505	-0.19333					6	5	2	0	0	0	0.024427	1	9811	9811		42.396	11.892	1	33761	+		50519	26336	35190	35243	55895	55895					0.04111840402447342
LYKELEKSE	9	Unmodified	_LYKELEKSE_					0	0	0		AURKC|p.Q133E|1|0.19|ENSG00000105146|chr19:57232642-57232642|C/G|missense_variant	AURKC|p.Q133E|1|0.19|ENSG00000105146|chr19:57232642-57232642|C/G|missense_variant	AURKC|p.Q133E|1|0.19|ENSG00000105146|chr19:57232642-57232642|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2843627929688	2	569.803154	1137.59175	-0.35672	-0.00020326	-4.4711	-0.0025476	-4.8278	-0.0027509	569.8007120705624	81.396	0.24822	81.253	81.026	81.275	-0.14249					8	5	2	0	0	0	0.024397	1	9768	9768		47.657	1.6851	1	247430			50520	168	35191	35244	55896	55896					0.028462712037253368
LYKEQLSL	8	Unmodified	_LYKEQLSL_					0	0	0			REV__ENST00000558862.2_1_15:49898364-49907386:-|nuORF	REV__ENST00000558862.2_1_15:49898364-49907386:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.28692626953125	2	497.2844	992.554247	-0.15683	-7.799E-05	0.45185	0.0002247	0.29502	0.00014671	497.28446860026753	35.728	0.90232	35.53	34.974	35.876	-0.19829					53	24	3	0	0	0	0.87148	1	2730	2730		53.351	5.4358	1	2188100	+		50521	35102	35192	35245	55897	55897					0.057672247287769096
LYKFRLVD	8	Unmodified	_LYKFRLVD_					0	0	0			REV__ENSG00000178804|ENST00000324382|H1-8	REV__ENSG00000178804|ENST00000324382|H1-8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2393188476562	2	527.30821	1052.60187	-0.74675	-0.00039377	3.6878	0.0019446	2.9411	0.0015508	527.3101646705912	63.301	0.96087	63.301	62.811	63.772	0					43	25	2	0	0	0	0.027866	1	7425	7425		35.618	6.4687	1	464470	+		50522	27208	35193	35246	55898	55898					0.07766923719623264
LYKFSQLK	8	Unmodified	_LYKFSQLK_					0	0	0		ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant;ENST00000538126.5_1_16:71712656-71757677:-|nuORF	ENSG00000040199|ENST00000568954|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8002319335938	2	513.80276	1025.59097	-0.75539	-0.00038812	-3.5842	-0.0018416	-4.3396	-0.0022297	513.8008047564907	31.598	0.89655	31.598	31.173	32.07	0					45	21	3	0	0	0	0.68164	1	2119	2119		68.787	2.3575	1	1811600			50523	1065	35194	35247	55899	55899					0.0791952134532039
LYKFSQLK	8	Unmodified	_LYKFSQLK_					0	0	0		ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant;ENST00000538126.5_1_16:71712656-71757677:-|nuORF	ENSG00000040199|ENST00000568954|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8002319335938	2	513.80276	1025.59097	-0.32152	-0.0001652	-4.0112	-0.002061	-4.3328	-0.0022262	513.8005489556185	31.514	1.0203	31.526	31.084	32.104	0.011797					50	24	4	0	0	0	0.80469	1	2092	2092		58.782	5.8453	1	1959600			50524	1065	35194	35247	55900	55900					0.0791952134532039
LYKGSDSATV	10	Unmodified	_LYKGSDSATV_					0	0	0			REV__BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant;REV__ENST00000082468.11_1_6:26405791-26410201:+|nuORF	REV__BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7666625976562	2	520.766571	1039.51859	-0.025376	-1.3215E-05	-0.85303	-0.00044423	-0.8784	-0.00045744	520.7661631309459	47.821	3.1046	47.545	47.194	50.299	-0.27598					242	83	6	0	0	0	0.74632	1	4751	4751		64.207	7.4862	1	68621000	+		50525	19223;20027	35195	35248	55901	55901					0.00041142481086353655
LYKIVEPF	8	Unmodified	_LYKIVEPF_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.78973388671875	2	504.791861	1007.56917	-0.79869	-0.00040317	-3.6919	-0.0018636	-4.4906	-0.0022668	504.7898608805745	28.195	0.74263	28.026	27.768	28.51	-0.16897					50	17	4	0	0	0	0.78609	1	1638	1638		60.294	0	1	1891100	+		50526	20563	35196	35249	55902	55902					0.0656871659675744
LYKMAQTDY	9	Unmodified	_LYKMAQTDY_					0	0	0			REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.7722778320312	2	566.7708	1131.52705	3.3609	0.0019049	3.9955	0.0022646	7.3564	0.0041694	566.772994453207	18.314	0.57397	18.378	18.222	18.796	0.063307					17	11	2	0	0	0	0.85329	1	245	245		35.618	6.4687	1	75882	+		50527	20149	35197	35250	55903	55903					-0.03345626873920082
LYKMAQTDY	9	Unmodified	_LYKMAQTDY_					0	0	0			REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	566.7708	1131.52705	2.4806	0.0014059	4.7339	0.0026831	7.2145	0.004089	566.7733956084571	18.161	0.4418	18.161	17.94	18.382	0	-0.072818	-0.00020997	NaN	35.618	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83597	+		50528	20149	35197	35250							-0.03345626873920082
LYKMAQTDY	9	Unmodified	_LYKMAQTDY_					0	0	0			REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	REV__ENST00000506641.5_1_5:1318486-1326363:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.7708	1131.52705	0.0086088	4.8792E-06	7.231	0.0040983	7.2396	0.0041032	566.774888616038	18.294	0.68774	18.163	18.006	18.694	-0.13147	-0.070958	0.0026205	NaN	35.618	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47827	+		50529	20149	35197	35250							-0.03345626873920082
LYKPNNVN	8	Unmodified	_LYKPNNVN_					0	0	0		sp|P29882|CEP1_EBVB9Cytoplasmicenvelopmentprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF2PE=1SV=1	sp|P29882|CEP1_EBVB9Cytoplasmicenvelopmentprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF2PE=1SV=1	sp|P29882|CEP1_EBVB9Cytoplasmicenvelopmentprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2738952636719	2	481.258717	960.50288	1.1549	0.0005558	-1.235	-0.00059436	-0.080142	-3.8569E-05	481.25793638129863	59.914	0.65656	59.914	59.637	60.294	0					55	17	5	0	0	0	0.027866	1	6904	6904		26.796	10.323	1	1883100			50530	37953	35198	35251	55904	55904					0.02104900754704886
LYKRGRRT	8	Unmodified	_LYKRGRRT_					0	0	0		ENSG00000104983|ENST00000595358|CCDC61	ENSG00000104983|ENST00000595358|CCDC61	ENSG00000104983|ENST00000595358|CCDC61	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3214721679688	2	525.319974	1048.6254	-0.02198	-1.1547E-05	2.3375	0.0012279	2.3155	0.0012164	525.3210591732035	19.664	0.77402	19.504	19.282	20.056	-0.1608					32	15	4	0	0	0	0.59392	1	452	452		76.847	13.54	1	324830			50531	2628	35199	35252	55905	55905					0.1030278227681265
LYKRGRRT	8	Unmodified	_LYKRGRRT_					0	0	0		ENSG00000104983|ENST00000595358|CCDC61	ENSG00000104983|ENST00000595358|CCDC61	ENSG00000104983|ENST00000595358|CCDC61	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	525.319974	1048.6254	0.87305	0.00045863	1.5219	0.00079948	2.395	0.0012581	525.3205949867269	19.78	0.49436	19.58	19.355	19.85	-0.2001	0.052764	-0.00023994	NaN	76.847	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311010			50532	2628	35199	35252							0.1030278227681265
LYKSQGEID	9	Unmodified	_LYKSQGEID_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7825317382812	2	526.766571	1051.51859	-0.09836	-5.1813E-05	-1.3039	-0.00068685	-1.4023	-0.00073866	526.7657043385615	49.622	0.67487	49.517	49.182	49.856	-0.10558					34	17	3	0	0	0	0.024405	1	5014	5014		27.882	13.017	1	440450			50533	6457	35200	35253	55906	55906					-0.005108575189069597
LYKSQGEID	9	Unmodified	_LYKSQGEID_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7826538085938	2	526.766571	1051.51859	-0.1378	-7.2587E-05	-1.1055	-0.00058236	-1.2433	-0.00065495	526.7659163928826	49.87	0.5948	49.591	49.359	49.953	-0.27977					23	15	2	0	0	0	0.024405	1	5031	5031		27.882	11.409	1	428780			50534	6457	35200	35253	55907	55907					-0.005108575189069597
LYLAFPLAFC	10	Unmodified	_LYLAFPLAFC_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.26171875	2	579.306821	1156.59909	-0.51273	-0.00029703	2.8924	0.0016756	2.3797	0.0013785	579.3084452430019	76.027	1.3588	75.755	75.06	76.419	-0.27266					68	33	3	0	0	0	0.03519	1	8939	8939		44.531	7.372	1	3925800			50535	8260	35201	35254	55908	55908					0.027053322704659877
LYLAHLKV	8	Unmodified	_LYLAHLKV_					0	0	0			REV__ENSG00000185924|ENST00000331238|RTN4RL1	REV__ENSG00000185924|ENST00000331238|RTN4RL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.8118591308594	2	478.80002	955.585488	0.3913	0.00018736	-4.1857	-0.0020041	-3.7944	-0.0018168	478.7979194878384	57.269	0.56363	57.269	56.968	57.532	0					32	14	3	0	0	0	0.027866	1	6454	6454		28.254	0	1	894730	+		50536	27809	35202	35255	55909	55909					0.10591842553515107
LYLDQLDRT	9	Unmodified	_LYLDQLDRT_					0	0	0		ENST00000402357.5_1_22:49145671-49146484:+|nuORF	ENST00000402357.5_1_22:49145671-49146484:+|nuORF	ENST00000402357.5_1_22:49145671-49146484:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2828369140625	2	568.800946	1135.58734	-0.49043	-0.00027896	2.4106	0.0013712	1.9202	0.0010922	568.8032493726504	81.482	1.0574	81.34	81.026	82.084	-0.14248					63	24	5	0	0	0	0.023417	1	9817	9817		90.777	14.003	1	3365700			50537	13682	35203	35256	55910	55910					0.02496806780800398
LYLELTRKW	9	Unmodified	_LYLELTRKW_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.88507080078125	3	407.904524	1220.69174	0.064223	2.6197E-05	-2.1586	-0.00088051	-2.0944	-0.00085431	407.90336837389253	23.086	0.41477	22.9	22.692	23.107	-0.18539					17	8	3	0	0	0	0.024511	1	883	883		19.104	0.1372	1	88125			50538	8280	35204	35257	55911	55911					0.09022553328168215
LYLFISTY	8	Unmodified	_LYLFISTY_					0	0	0			REV__ENST00000462721.5_1_19:35988209-35989636:-|nuORF	REV__ENST00000462721.5_1_19:35988209-35989636:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.26470947265625	2	510.276044	1018.53753	-0.60341	-0.00030791	-0.18161	-9.2673E-05	-0.78503	-0.00040058	510.2755469857602	81.695	0.69135	81.695	81.258	81.95	0					46	16	3	0	0	0	0.027866	1	10126	10126		21.702	0	1	672000	+		50539	32911	35205	35258	55912	55912					0.029007238427993798
LYLFQLHMK	9	Unmodified	_LYLFQLHMK_					0	0	0		ENSG00000102934|ENST00000219207|PLLP	ENSG00000102934|ENST00000219207|PLLP	ENSG00000102934|ENST00000219207|PLLP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.280517578125	2	596.830995	1191.64744	0.057274	3.4183E-05	2.8246	0.0016858	2.8818	0.00172	596.83250522565	59.431	0.60392	59.182	58.93	59.533	-0.24842					30	14	3	0	0	0	0.024436	1	6566	6566		47.916	25.956	1	348690			50540	2447	35206	35259	55913	55913					0.05927825910316642
LYLGEVTKA	9	Unmodified	_LYLGEVTKA_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2835998535156	2	497.2844	992.554247	0.00010335	5.1393E-08	-0.64465	-0.00032058	-0.64455	-0.00032052	497.2838995959278	49.58	1.1344	49.3	48.973	50.108	-0.27977					64	29	4	0	0	0	0.20967	1	4985	4985		87.754	18.127	1	4750300			50541	722;18025	35207	35260	55914	55914					0.05767224728754172
LYLGEVTKA	9	Unmodified	_LYLGEVTKA_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-3|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2816467285156	2	497.2844	992.554247	-0.073915	-3.6757E-05	-0.8119	-0.00040374	-0.88581	-0.0004405	497.28383505483635	49.427	0.82966	49.245	48.921	49.751	-0.18206					65	21	5	0	0	0	0.4752	1	4975	4975		60.972	7.6205	1	4262700			50542	722;18025	35207	35260	55915	55915					0.05767224728754172
LYLGSILVD	9	Unmodified	_LYLGSILVD_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.8060607910156	2	496.786776	991.558998	-0.25008	-0.00012424	-3.1329	-0.0015564	-3.3829	-0.0016806	496.785178926813	89.954	0.48576	89.954	89.647	90.133	0					16	11	2	0	0	0	0.024436	1	11363	11363		38.806	9.6566	1	96537			50543	18063	35208	35261	55916	55916					0.06288108871535769
LYLGSILVD	9	Unmodified	_LYLGSILVD_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3;TNPO3|p.G830Wfs*26|1|0.29|ENSG00000064419|chr7:128970258-128970259|-/A|frameshift_variant;nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.805908203125	2	496.786776	991.558998	0.16932	8.4118E-05	-3.0122	-0.0014964	-2.8429	-0.0014123	496.7848055773582	89.956	0.36464	89.939	89.751	90.116	-0.016716					12	8	2	0	0	0	0.024354	1	11333	11333		38.806	16.846	1	94016			50544	18063	35208	35261	55917	55917					0.06288108871535769
LYLGWAAGIF	10	Unmodified	_LYLGWAAGIF_					0	0	0		ENSG00000228607|ENST00000453129|CLDN25	ENSG00000228607|ENST00000453129|CLDN25	ENSG00000228607|ENST00000453129|CLDN25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.3260498046875	2	555.80276	1109.59097	-0.4068	-0.0002261	-3.1557	-0.001754	-3.5625	-0.0019801	555.8007795362181	54.734	0.2914	54.588	54.316	54.608	-0.14609					14	7	2	0	0	0	0.03519	1	5828	5828		26.796	0	1	257790			50545	10678	35209	35262	55918	55918					0.04055521345298985
LYLIKLIL	8	Unmodified	_LYLIKLIL_					0	0	0		ENST00000312561.8_2_12:32134292-32134358:+|nuORF	ENST00000312561.8_2_12:32134292-32134358:+|nuORF	ENST00000312561.8_2_12:32134292-32134358:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3010559082031	2	494.843897	987.67324	0.033904	1.6777E-05	3.6213	0.001792	3.6552	0.0018088	494.84448731995127	96.114	0.16333	96.114	95.991	96.155	0					5	3	2	0	0	0	0.027866	1	12248	12248		5.0869	0	1	52738			50546	12091	35210	35263	55919	55919					0.17891043424288
LYLKELLNL	9	Unmodified	_LYLKELLNL_					0	0	0		nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1;ENST00000521973.5_1_8:125516164-125531109:-|nuORF	nc|ENSG00000147687|Q6P1N9-2|TATDN1	nc|ENSG00000147687|Q6P1N9-2|TATDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.8159790039062	2	559.844625	1117.6747	-0.008213	-4.598E-06	-0.32267	-0.00018065	-0.33089	-0.00018525	559.8446787631705	80.867	0.19611	80.629	80.49	80.686	-0.23784					8	4	2	0	0	0	0.024541	1	9676	9676		17.365	0	1	72586			50547	5991	35211	35264	55920	55920					0.12056632722351424
LYLKELNRC	9	Unmodified	_LYLKELNRC_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.2413940429688	2	576.315709	1150.61686	0.20183	0.00011632	-2.1955	-0.0012653	-1.9937	-0.001149	576.3144454009841	68.526	0.36194	68.295	68.077	68.439	-0.23048					19	8	3	0	0	0	0.024473	1	7936	7936		41.427	10.923	1	423850	+		50548	23247	35212	35265	55921	55921					0.047580475252971155
LYLKLWNL	8	Unmodified	_LYLKLWNL_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3067626953125	2	531.820953	1061.62735	-0.094065	-5.0026E-05	4.382	0.0023305	4.288	0.0022804	531.8224989195896	58.636	0.40492	58.636	58.418	58.823	0					15	10	2	0	0	0	0.027866	1	6663	6663		44.531	0	1	113560			50549	9389	35213	35266	55922	55922					0.09900398242029951
LYLKQQPW	8	Unmodified	_LYLKQQPW_					0	0	0		ATP13A5|p.V995L|1|0.25|ENSG00000187527|chr3:193289925-193289925|C/A|missense_variant	ATP13A5|p.V995L|1|0.25|ENSG00000187527|chr3:193289925-193289925|C/A|missense_variant	ATP13A5|p.V995L|1|0.25|ENSG00000187527|chr3:193289925-193289925|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2459106445312	2	538.300384	1074.58622	-0.85584	-0.0004607	-4.3856	-0.0023608	-5.2414	-0.0028215	538.2986508018632	35.75	1.0957	35.545	35.186	36.282	-0.20518					48	29	3	0	0	0	0.027866	1	2730	2730		46.766	24.187	1	561140			50550	152	35214	35267	55923	55923					0.051906372025541714
LYLLKKKAL	9	Unmodified	_LYLLKKKAL_					0	0	0			REV__ENST00000555109.1_1_14:24970801-24977459:+|nuORF	REV__ENST00000555109.1_1_14:24970801-24977459:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.324462890625	2	545.373352	1088.73215	-0.40486	-0.0002208	0.54463	0.00029703	0.13977	7.6227E-05	545.3741977419589	68.225	0.19617	68.244	68.08	68.276	0.018913					6	4	2	0	0	0	0.024541	1	8081	8081		26.796	13.021	1	108040	+		50551	35001	35215	35268	55924	55924					0.1913351971859356
LYLLLTSI	8	Unmodified	_LYLLLTSI_					0	0	0		nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-3|SMG8	nc|ENSG00000167447|Q8ND04-2|SMG8	nc|ENSG00000167447|Q8ND04-2|SMG8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.2591857910156	2	468.294236	934.57392	0.42106	0.00019718	-3.2859	-0.0015388	-2.8649	-0.0013416	468.2924624644988	44.788	0.5605	44.825	44.542	45.103	0.0369					23	15	2	0	0	0	0.027866	1	4266	4266		17.365	3.5896	1	129460			50552	7688	35216	35269	55925	55925					0.10401600739510286
LYLLPAYGRR	10	Unmodified	_LYLLPAYGRR_					0	0	0			REV__ENSG00000196968|ENST00000372841|FUT11	REV__ENSG00000196968|ENST00000372841|FUT11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.355712890625	2	611.358765	1220.70298	0.14541	8.89E-05	-4.3258	-0.0026446	-4.1804	-0.0025557	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.1217	1	11757	11757		21.96	0.27414	1	13233000	+		50553	28247	35217	35270	55926	55926					0.10145375422303005
LYLLPPREA	9	Unmodified	_LYLLPPREA_					0	0	0		ENST00000560518.1_1_15:52473228-52473384:+|nuORF;ENST00000559779.1_1_15:52472529-52473384:+|nuORF	ENST00000560518.1_1_15:52473228-52473384:+|nuORF	ENST00000560518.1_1_15:52473228-52473384:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.3143920898438	2	536.313492	1070.61243	0.33451	0.0001794	3.081	0.0016524	3.4155	0.0018318	536.314848105324	84.566	1.064	84.407	83.714	84.778	-0.15869					51	24	3	0	0	0	0.80658	1	10171	10171		38.806	1.7777	1	594670			50554	16788	35218	35271	55927	55927					0.07994906374028687
LYLLRLPLE	9	Unmodified	_LYLLRLPLE_					0	0	0			REV__ENST00000588701.1_1_17:75370096-75370759:-|nuORF	REV__ENST00000588701.1_1_17:75370096-75370759:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.352294921875	2	565.352617	1128.69068	0.62298	0.0003522	-0.70808	-0.00040031	-0.0851	-4.8111E-05	565.3521001916072	86.934	1.1466	86.792	86.364	87.51	-0.14217					79	26	4	0	0	0	0.4752	1	10565	10565		60.972	0.85368	1	1269100	+		50555	35654	35219	35272	55928	55928					0.13148338959285866
LYLLTILGNTT	11	Unmodified	_LYLLTILGNTT_					0	0	0		ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3544921875	2	611.358096	1220.70164	-0.5279	-0.00032273	-2.8308	-0.0017306	-3.3587	-0.0020534	611.3562554984684	92.326	2.2035	92.318	91.16	93.364	-0.0082932					149	52	4	0	0	0	0.95882	1	11711	11711		45.972	9.5255	1	3964400			50556	8746	35220	35273	55929	55929					0.1001169654291516
LYLLTILGNTT	11	Unmodified	_LYLLTILGNTT_					0	0	0		ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3562622070312	2	611.358096	1220.70164	-0.32068	-0.00019605	-2.8205	-0.0017243	-3.1411	-0.0019204	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	0.97926	1	12045	12045		41.427	1.3684	1	11218000			50557	8746	35220	35273	55930	55930					0.1001169654291516
LYLLTILGNTT	11	Unmodified	_LYLLTILGNTT_					0	0	0		ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3525390625	2	611.358096	1220.70164	-0.35919	-0.00021959	-3.2034	-0.0019584	-3.5626	-0.002178	611.3559902690897	92.567	2.8634	92.445	90.59	93.453	-0.12241					191	67	5	0	0	0	1.0238	1	11453	11453		31.53	5.9558	1	4932800			50558	8746	35220	35273	55931	55931					0.1001169654291516
LYLLTILGNTT	11	Unmodified	_LYLLTILGNTT_					0	0	0		ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	ENSG00000177489|ENST00000320065|OR2G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3560791015625	2	611.358096	1220.70164	-0.45812	-0.00028007	-2.6812	-0.0016391	-3.1393	-0.0019192	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.0238	2	11718	11718;11742		31.53	3.4483	1	13365000			50559	8746	35220	35273	55932;55933	55932					0.1001169654291516
LYLLVFAVLI	10	Unmodified	_LYLLVFAVLI_					0	0	0		nc|ENSG00000038945|P21757-2|MSR1;nc|ENSG00000038945|P21757-3|MSR1;ENSG00000038945|ENST00000262101|MSR1;MSR1|p.P66H|1|0.31|ENSG00000038945|chr8:16175207-16175207|G/T|missense_variant	nc|ENSG00000038945|P21757-2|MSR1	nc|ENSG00000038945|P21757-2|MSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.3535766601562	2	582.375561	1162.73657	-1.4905	-0.00086805	-0.0044501	-2.5916E-06	-1.495	-0.00087064	582.3747575104481	102.26	0.30969	102.26	102.13	102.44	0					12	6	3	0	0	0	0.03519	1	13098	13098		19.36	0	1	74105			50560	1056	35221	35274	55934	55934					0.16170984141513145
LYLNLHAF	8	Unmodified	_LYLNLHAF_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE;ENST00000582678.5_1_17:61557143-61562826:+|nuORF	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2864685058594	2	495.774003	989.533452	0.040828	2.0242E-05	-4.1769	-0.0020708	-4.1361	-0.0020506	495.77175218348503	51.229	0.6908	50.952	50.702	51.393	-0.27643					45	17	3	0	0	0	0.027866	1	5307	5307		28.254	0	1	1275500			50561	6757	35222	35275	55935	55935					0.03826679139751832
LYLNLRTF	8	Unmodified	_LYLNLRTF_					0	0	0			REV__ENSG00000103544|ENST00000417362|VPS35L	REV__ENSG00000103544|ENST00000417362|VPS35L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8203735351562	2	520.300384	1038.58622	0.01291	6.7168E-06	-1.0788	-0.00056128	-1.0658	-0.00055456	520.2980250460582	80.764	0.44555	80.618	80.409	80.855	-0.146					13	10	2	0	0	0	0.027866	1	9672	9672		38.806	13.356	1	69663	+		50562	21395	35223	35276	55936	55936					0.06846637202556849
LYLPFTLIY	9	Unmodified	_LYLPFTLIY_					0	0	0			REV__ENSG00000185432|ENST00000332160|METTL7A	REV__ENSG00000185432|ENST00000332160|METTL7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.310791015625	2	571.828443	1141.64233	0.12097	6.9172E-05	-1.9643	-0.0011232	-1.8433	-0.0010541	571.8271462294158	74.853	0.12086	74.589	74.489	74.61	-0.26326					4	2	2	0	0	0	0.024443	1	8837	8837		35.201	0	1	132980	+		50563	27762	35224	35277	55937	55937					0.07717845319371008
LYLQFNEI	8	Unmodified	_LYLQFNEI_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2762451171875	2	520.276575	1038.5386	-1.2395	-0.00064487	0.88556	0.00046074	-0.35391	-0.00018413	520.2767921133234	91.88	1.6616	91.88	91.133	92.794	0					86	39	4	0	0	0	0.77775	1	11658	11658		60.972	5.4677	1	1635600			50564	4227	35225	35278	55938	55938					0.020869382117098212
LYLQLREA	8	Unmodified	_LYLQLREA_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7693786621094	2	503.290017	1004.56548	-0.13399	-6.7436E-05	-1.1526	-0.0005801	-1.2866	-0.00064753	503.289410186789	65.839	0.89693	65.598	65.289	66.186	-0.24145					40	21	3	0	0	0	0.027866	1	7507	7507		38.806	0	1	328990	+		50565	25445	35226	35279	55939	55939					0.0633804682288428
LYLQQNWW	8	Unmodified	_LYLQQNWW_					0	0	0		sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	sp|P03230|LMP1_EBVB9Latentmembraneprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.240966796875	2	575.787641	1149.56073	-0.032297	-1.8596E-05	-4.4742	-0.0025762	-4.5065	-0.0025948	576.2857262355382	68.771	0.15816	68.54	68.439	68.598	-0.23048					5	3	2	0	0	0	0.027866	1	7948	7948		33.516	4.366	1	74847			50566	37936	35227	35280	55940	55940					-0.00806837319873921
LYLQSSQT	8	Unmodified	_LYLQSSQT_					0	0	0			REV__ENSG00000134440|ENST00000256854|NARS1	REV__ENSG00000134440|ENST00000256854|NARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.7688903808594	2	470.242732	938.470912	-0.24392	-0.0001147	0.55778	0.00026229	0.31387	0.00014759	470.24282072462086	35.545	0.3586	35.329	35.137	35.496	-0.21555					15	8	2	0	0	0	0.027866	1	2726	2726		40.573	7.057	1	109300	+		50567	23451	35228	35281	55941	55941					-0.0007851171908441756
LYLTCAELL	9	Unmodified	_LYLTCAELL_					0	0	0			REV__ENST00000534146.5_1_1:76190451-76198848:+|nuORF	REV__ENST00000534146.5_1_1:76190451-76198848:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7792358398438	2	519.780636	1037.54672	0.36845	0.00019151	-3.7298	-0.0019387	-3.3614	-0.0017472	519.7785621250068	86.252	0.91414	86.115	85.66	86.574	-0.13734					44	20	3	0	0	0	0.31247	1	10466	10466		73.975	2.679	1	713340	+		50568	34629	35229	35282	55942	55942					0.029447491368273404
LYLTFTFR	8	Unmodified	_LYLTFTFR_					0	0	0			REV__ENSG00000221878|ENST00000406070|PSG7	REV__ENSG00000221878|ENST00000406070|PSG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7592163085938	2	530.794935	1059.57532	-0.88398	-0.00046921	0.72835	0.0003866	-0.15563	-8.2608E-05	530.7952858185606	96.675	0.83263	96.675	96.314	97.147	0					51	18	4	0	0	0	0.027866	1	12341	12341		50.025	30.665	1	290070	+		50569	28835	35230	35283	55943	55943					0.047912348282807216
LYLTLRTE	8	Unmodified	_LYLTLRTE_					0	0	0		sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7895202636719	2	504.78985	1007.56515	-0.7987	-0.00040317	0.29267	0.00014774	-0.50602	-0.00025544	504.7898608805745	28.195	0.74263	28.026	27.768	28.51	-0.16897					50	17	4	0	0	0	0.50239	2	1612	1612;1624		85.359	0.44396	1	1891100			50570	37949	35231	35284	55944;55945	55944					0.061666271030503594
LYLTPTRTY	9	Unmodified	_LYLTPTRTY_					0	0	0			REV__ENSG00000087842|ENST00000380420|PIR	REV__ENSG00000087842|ENST00000380420|PIR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2686767578125	2	564.308406	1126.60226	0.48199	0.00027199	-1.9539	-0.0011026	-1.4719	-0.00083063	564.3073170408229	59.813	0.63844	59.637	59.321	59.96	-0.1761					43	16	4	0	0	0	0.024487	1	6620	6620		31.955	1.4512	1	1059300	+		50571	20804	35232	35285	55946	55946					0.04402298648801661
LYLTPTRTY	9	Unmodified	_LYLTPTRTY_					0	0	0			REV__ENSG00000087842|ENST00000380420|PIR	REV__ENSG00000087842|ENST00000380420|PIR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.308406	1126.60226	0.83668	0.00047214	-1.1528	-0.00065054	-0.31613	-0.0001784	564.3075666649373	59.657	0.69352	59.657	59.333	60.027	0	-0.0041666	-0.00046839	NaN	45.952	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1834200	+		50572	20804	35232	35285							0.04402298648801661
LYLTPTRTY	9	Unmodified	_LYLTPTRTY_					0	0	0			REV__ENSG00000087842|ENST00000380420|PIR	REV__ENSG00000087842|ENST00000380420|PIR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.308406	1126.60226	-0.19525	-0.00011018	-0.13443	-7.586E-05	-0.32968	-0.00018604	564.3081117490997	59.82	0.70004	59.62	59.393	60.093	-0.20016	-0.041147	0.00068098	NaN	45.952	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1625700	+		50573	20804	35232	35285							0.04402298648801661
LYLTPTRTY	9	Unmodified	_LYLTPTRTY_					0	0	0			REV__ENSG00000087842|ENST00000380420|PIR	REV__ENSG00000087842|ENST00000380420|PIR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.308406	1126.60226	-0.49549	-0.00027961	0.16652	9.3968E-05	-0.32897	-0.00018564	564.3083222989823	59.526	0.77869	59.612	59.277	60.056	0.085686	-0.049383	0.0010206	NaN	45.952	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1495100	+		50574	20804	35232	35285							0.04402298648801661
LYLTPTRTY	9	Unmodified	_LYLTPTRTY_					0	0	0			REV__ENSG00000087842|ENST00000380420|PIR	REV__ENSG00000087842|ENST00000380420|PIR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.308406	1126.60226	1.0301	0.00058131	-2.2931	-0.001294	-1.263	-0.00071271	564.3069924608507	59.902	0.52103	59.704	59.499	60.02	-0.19742	0.042679	-0.0017553	NaN	45.952	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1038500	+		50575	20804	35232	35285							0.04402298648801661
LYLVPACIGF	10	Unmodified	_LYLVPACIGF_					0	0	0		nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9-5|HM13	nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.282470703125	2	548.298996	1094.58344	-0.12529	-6.8697E-05	-2.461	-0.0013494	-2.5863	-0.0014181	548.2984378671465	54.563	0.21412	54.318	54.265	54.479	-0.2453					8	5	2	0	0	0	0.03519	1	5800	5800		26.796	0	1	101090			50576	2305	35233	35286	55947	55947					0.03993045753395563
LYLVSPTEI	9	Unmodified	_LYLVSPTEI_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5;ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7939453125	2	517.792058	1033.56956	0.97355	0.0005041	2.1708	0.001124	3.1443	0.0016281	517.7930151292054	99.886	2.0152	99.761	97.848	99.863	-0.12504					66	51	2	0	0	0	0.70186	1	12379	12379		45.952	1.8352	1	554780			50577	7286	35234	35287	55948	55948					0.05412091525931828
LYLYLYKN	8	Unmodified	_LYLYLYKN_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3244018554688	2	545.302593	1088.59063	-0.77973	-0.00042519	-0.23664	-0.00012904	-1.0164	-0.00055423	545.3023775899403	68.581	1.3302	68.581	68.217	69.547	0					57	34	2	0	0	0	0.027866	1	8191	8191		44.531	0	1	1491700			50578	5972	35235	35288	55949	55949					0.049881016254630595
LYNAGVVDL	9	Unmodified	_LYNAGVVDL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.763427734375	2	482.260925	962.507297	-0.28429	-0.0001371	0.8068	0.00038909	0.52251	0.00025198	482.2611531047443	66.74	1.278	66.459	66.281	67.559	-0.28149					96	36	3	0	0	0	0.85329	1	7902	7902		35.618	1.4457	1	3600200			50579	828	35236	35289	55950	55950					0.02454365177618456
LYNFEMAIE	9	Unmodified	_LYNFEMAIE_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.2363891601562	2	565.26535	1128.51615	0.044823	2.5337E-05	-4.3595	-0.0024643	-4.3147	-0.0024389	565.262929860571	46.142	1.3283	46.046	45.461	46.789	-0.096649					43	36	2	0	0	0	0.024263	1	4424	4424		71.296	16.573	1	333040	+		50580	26178	35237	35290	55951	55951					-0.0429702924823232
LYNGATRKL	9	Unmodified	_LYNGATRKL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.3013305664062	2	518.300916	1034.58728	-0.033724	-1.7479E-05	-0.3653	-0.00018934	-0.39902	-0.00020681	518.3006111214258	30.081	0.47075	29.932	29.709	30.18	-0.14952					30	10	4	0	0	0	0.12914	1	1873	1873		104.06	15.414	1	572650			50581	1808	35238	35291	55952	55952					0.07136851571476654
LYNGNMYW	8	Unmodified	_LYNGNMYW_					0	0	0			REV__ENSG00000188338|ENST00000614032|SLC38A3	REV__ENSG00000188338|ENST00000614032|SLC38A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7870483398438	2	530.731477	1059.4484	-0.42963	-0.00022802	-4.2075	-0.0022331	-4.6372	-0.0024611	530.7272827126993	56.901	0.14948	56.734	56.637	56.786	-0.1672					5	3	2	0	0	0	0.027866	1	6184	6184		37.028	7.8789	1	134980	+		50582	28031	35239	35292	55953	55953					-0.07894434388367699
LYNKGELSVS	10	Unmodified	_LYNKGELSVS_					0	0	0			REV__nc|ENSG00000118094|O43280-2|TREH	REV__nc|ENSG00000118094|O43280-2|TREH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7747802734375	2	555.295496	1108.57644	0.0070354	3.9067E-06	0.61738	0.00034283	0.62441	0.00034673	555.7964070822557	57.907	0.45679	57.717	57.332	57.789	-0.19018					24	11	3	0	0	0	0.03519	1	6315	6315		42.864	0	1	116070	+		50583	22386	35240	35293	55954	55954					0.026494044065202615
LYNLQKRT	8	Unmodified	_LYNLQKRT_					0	0	0			REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.300537109375	2	518.300916	1034.58728	-0.59786	-0.00030987	0.20971	0.00010869	-0.38815	-0.00020118	518.3008971946178	30.132	0.46771	29.888	29.696	30.163	-0.24415					24	10	3	0	0	0	0.81662	1	1908	1908		57.811	1.0902	1	495460	+		50584	33150	35241	35294	55955	55955					0.07136851571453917
LYNLQKRT	8	Unmodified	_LYNLQKRT_					0	0	0			REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.30078125	2	518.300916	1034.58728	-0.67603	-0.00035038	0.051685	2.6789E-05	-0.62434	-0.0003236	518.3008610979954	30.06	0.46905	29.882	29.655	30.124	-0.17818					29	10	4	0	0	0	0.74904	1	1889	1889		63.306	0	1	503780	+		50585	33150	35241	35294	55956	55956					0.07136851571453917
LYNNIKQEL	9	Unmodified	_LYNNIKQEL_					0	0	0			REV__ENSG00000090020|ENST00000263980|SLC9A1	REV__ENSG00000090020|ENST00000263980|SLC9A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.8106689453125	2	567.811313	1133.60807	-1.1634	-0.00066059	0.034612	1.9653E-05	-1.1288	-0.00064094	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.2101	1	8256	8256		87.696	12.653	1	13770000	+		50586	20867	35242	35295	55957	55957					0.04661397160475644
LYNPIGIFL	9	Unmodified	_LYNPIGIFL_					0	0	0		nc|ENSG00000189099|Q7RTY5-3|PRSS48;ENSG00000189099|ENST00000455694|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3195190429688	2	525.305136	1048.59572	-0.66626	-0.00034999	-3.1329	-0.0016457	-3.7992	-0.0019957	525.303331484403	64.455	0.74095	64.455	64.168	64.909	0					33	19	2	0	0	0	0.024535	1	7581	7581		25.45	8.0852	1	546100			50587	9788	35243	35296	55958	55958					0.07336405488081255
LYNPIGIFL	9	Unmodified	_LYNPIGIFL_					0	0	0		nc|ENSG00000189099|Q7RTY5-3|PRSS48;ENSG00000189099|ENST00000455694|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.305136	1048.59572	-0.58615	-0.00030791	-4.0615	-0.0021335	-4.6476	-0.0024414	525.3028426445941	64.572	0.54794	64.337	64.059	64.607	-0.2345	-0.12007	-0.00042373	NaN	25.45	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135050			50588	9788	35243	35296							0.07336405488081255
LYNPIGIFL	9	Unmodified	_LYNPIGIFL_					0	0	0		nc|ENSG00000189099|Q7RTY5-3|PRSS48;ENSG00000189099|ENST00000455694|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.305136	1048.59572	-0.45333	-0.00023814	-4.7004	-0.0024691	-5.1537	-0.0027073	525.3024213994123	64.75	0.506	64.495	64.076	64.582	-0.25562	0.037086	-0.001095	NaN	25.45	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182220			50589	9788	35243	35296							0.07336405488081255
LYNRQTRIHKL	11	Unmodified	_LYNRQTRIHKL_					0	0	0			REV__nc|ENSG00000144724|P23470-2|PTPRG	REV__nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28228759765625	3	481.284398	1440.83137	0.87515	0.00042119	-2.6172	-0.0012596	-1.7421	-0.00083843	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.0834	1	12655	12655		15.921	2.9632	1	1033300	+		50590	24354	35244	35297	55959	55959					0.12858310665387762
LYPARALPK	9	Unmodified	_LYPARALPK_					0	0	0			REV__ENSG00000219626|ENST00000615575|FAM228B	REV__ENSG00000219626|ENST00000615575|FAM228B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8037719726562	2	514.816202	1027.61785	-0.71346	-0.0003673	0.53426	0.00027504	-0.17921	-9.2259E-05	514.8157166962986	69.1	0.60036	69.115	68.865	69.465	0.015129					24	15	3	0	0	0	0.024523	1	8193	8193		29.15	1.2673	1	443390	+		50591	28826	35245	35298	55960	55960					0.10514629956492172
LYPLLRRD	8	Unmodified	_LYPLLRRD_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.32568359375	2	523.311284	1044.60801	-0.063429	-3.3193E-05	-1.8771	-0.00098232	-1.9406	-0.0010155	523.3101918091486	80.831	0.53046	80.685	80.451	80.981	-0.146					23	12	3	0	0	0	0.027866	1	9699	9699		37.028	10.232	1	101820			50592	9617	35246	35299	55961	55961					0.0874944195113585
LYPLSQELL	9	Unmodified	_LYPLSQELL_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3051147460938	2	538.305332	1074.59611	0.37092	0.00019967	-0.60988	-0.0003283	-0.23896	-0.00012863	538.3048003228321	85.789	1.0281	85.64	85.285	86.313	-0.14967					76	23	4	0	0	0	0.31037	1	10426	10426		74.255	0	1	1617000	+		50593	27243	35247	35300	55962	55962					0.06179780417301117
LYPNLSWLL	9	Unmodified	_LYPNLSWLL_					0	0	0		ENST00000480153.5_1_20:35399687-35402151:-|nuORF	ENST00000480153.5_1_20:35399687-35402151:-|nuORF	ENST00000480153.5_1_20:35399687-35402151:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8152465820312	2	559.815867	1117.61718	0.27362	0.00015318	-0.94312	-0.00052797	-0.6695	-0.00037479	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.33245	2	9802	9802;9840		71.296	12.514	1	35108000			50594	15188	35248	35301	55963;55964	55963					0.06307790516802925
LYPPASNRT	9	Unmodified	_LYPPASNRT_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.76959228515625	2	509.769448	1017.52434	-0.58712	-0.0002993	0.72755	0.00037088	0.14043	7.1589E-05	509.7697494905825	42.347	0.80231	42.115	41.803	42.605	-0.23186					51	21	4	0	0	0	0.39228	1	3805	3805		66.429	7.6473	1	1455700			50595	6398	35249	35302	55965	55965					0.01628285783431238
LYPPQEEEP	9	Unmodified	_LYPPQEEEP_					0	0	0		EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant	EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant	EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7978515625	2	551.258579	1100.50261	-0.31759	-0.00017508	-3.1393	-0.0017306	-3.4569	-0.0019057	551.2567851883578	53.398	0.4589	53.398	53.16	53.618	0					17	12	2	0	0	0	0.024484	1	5735	5735		37.812	18.708	1	158860			50596	17616	35250	35303	55966	55966					-0.043625637557852315
LYPPQEEEP	9	Unmodified	_LYPPQEEEP_					0	0	0		EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant	EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant	EPHA2|p.A542Gfs*54|1|0.22|ENSG00000142627|chr1:16134527-16134528|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7982788085938	2	551.258579	1100.50261	-0.77028	-0.00042462	-2.1774	-0.0012003	-2.9477	-0.0016249	551.257291002361	53.187	0.46435	53.283	53.054	53.518	0.095669					21	12	2	0	0	0	0.024484	1	5635	5635		45.972	11.8	1	217700			50597	17616	35250	35303	55967	55967					-0.043625637557852315
LYPSMPLF	8	Unmodified	_LYPSMPLF_					0	0	0		ENSG00000197901|ENST00000360421|SLC22A6;nc|ENSG00000197901|Q4U2R8|SLC22A6	ENSG00000197901|ENST00000360421|SLC22A6	ENSG00000197901|ENST00000360421|SLC22A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2533874511719	2	484.251514	966.488476	-0.22629	-0.00010958	4.0799	0.0019757	3.8536	0.0018661	484.2534186100866	52.372	1.3594	52.372	52.012	53.372	0					101	35	5	0	0	0	0.67787	1	5600	5600		69.093	3.2898	1	9564000			50598	10065	35251	35304	55968	55968					0.003891122822096804
LYPTVYTLW	9	Unmodified	_LYPTVYTLW_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.300048828125	2	578.307875	1154.6012	-0.47564	-0.00027506	-3.655	-0.0021137	-4.1307	-0.0023888	578.3057573261386	52.074	1.0237	51.955	51.575	52.599	-0.11875					78	26	4	0	0	0	0.60698	1	5375	5375		52.299	0.77141	1	8383500			50599	5653	35252	35305	55969	55969					0.03008084279895229
LYPTWFVL	8	Unmodified	_LYPTWFVL_					0	0	0			REV__ENST00000484423.5_1_1:145576054-145578613:+|nuORF	REV__ENST00000484423.5_1_1:145576054-145578613:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7846069335938	2	519.786579	1037.5586	-0.68211	-0.00035455	-3.3781	-0.0017559	-4.0602	-0.0021104	519.7847314319765	78.115	0.95178	78.13	77.739	78.69	0.015907					76	22	5	0	0	0	0.85409	1	9571	9571		54.765	8.8127	1	4017700	+		50600	33540	35253	35306	55970	55970					0.04132733942333289
LYQDRPDAWHS	11	Unmodified	_LYQDRPDAWHS_					0	0	0			REV__ENST00000305883.5_1_2:10193335-10193581:+|nuORF	REV__ENST00000305883.5_1_2:10193335-10193581:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.7872619628906	3	463.217831	1386.63166	-0.090019	-4.1699E-05	-0.3252	-0.00015064	-0.41522	-0.00019234	463.5518872074506	33.607	0.40018	33.376	33.193	33.593	-0.23107					15	9	2	0	0	0	0.024809	1	2408	2408		22.562	0	1	74801	+		50601	30116	35254	35307	55971	55971					-0.0461878907301525
LYQFDEKY	8	Unmodified	_LYQFDEKY_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.2614135742188	2	553.263665	1104.51278	-0.97129	-0.00053738	-3.0468	-0.0016857	-4.0181	-0.0022231	553.2618418369128	44.784	0.58505	44.685	44.392	44.977	-0.099445					31	14	3	0	0	0	0.39824	2	4212	4195;4212		97.473	14.064	1	1865000			50602	8926	35255	35308	55972;55973	55973					-0.03529956030570247
LYQFDEKY	8	Unmodified	_LYQFDEKY_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.2608032226562	2	553.263665	1104.51278	-0.72301	-0.00040002	-2.8595	-0.0015821	-3.5826	-0.0019821	553.2617478635359	44.947	0.74305	44.736	44.474	45.217	-0.21109					43	19	4	0	0	0	0.56067	1	4225	4225		79.939	0.48821	1	1947400			50603	8926	35255	35308	55974	55974					-0.03529956030570247
LYQIEPTL	8	Unmodified	_LYQIEPTL_					0	0	0			REV__ENSG00000128242|ENST00000406361|GAL3ST1	REV__ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.77197265625	2	488.771126	975.527698	0.76925	0.00037599	-0.74433	-0.00036381	0.02492	1.218E-05	488.77052237153464	74.596	0.62869	74.413	74.18	74.809	-0.18279					31	14	3	0	0	0	0.80469	1	8794	8794		58.782	0	1	583910	+		50604	22969	35256	35309	55975	55975					0.03895535837443731
LYQIEPTL	8	Unmodified	_LYQIEPTL_					0	0	0			REV__ENSG00000128242|ENST00000406361|GAL3ST1	REV__ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.771126	975.527698	-0.1327	-6.4861E-05	0.13922	6.8047E-05	0.0065185	3.1861E-06	488.7709156619275	74.774	0.70633	74.499	74.308	75.015	-0.27573	0.024541	0.00038295	NaN	58.782	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256370	+		50605	22969	35256	35309							0.03895535837443731
LYQIEPTL	8	Unmodified	_LYQIEPTL_					0	0	0			REV__ENSG00000128242|ENST00000406361|GAL3ST1	REV__ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.771126	975.527698	0.1273	6.2221E-05	-0.12085	-5.9068E-05	0.00645	3.1526E-06	488.7708727620826	74.774	0.54189	74.511	74.274	74.816	-0.26326	0.036661	0.00012872	NaN	58.782	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455230	+		50606	22969	35256	35309							0.03895535837443731
LYQIEPTL	8	Unmodified	_LYQIEPTL_					0	0	0			REV__ENSG00000128242|ENST00000406361|GAL3ST1	REV__ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	488.771126	975.527698	0.76925	0.00037599	-0.74433	-0.00036381	0.02492	1.218E-05	488.77052237153464	74.596	0.62869	74.413	74.18	74.809	-0.18279	-0.061202	-0.00048076	NaN	58.782	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583910	+		50607	22969	35256	35309							0.03895535837443731
LYQPKHDPTF	10	Unmodified	_LYQPKHDPTF_					0	0	0		ENSG00000099994|ENST00000358321|SUSD2;ENST00000463101.1_1_22:24583504-24584401:+|nuORF	ENSG00000099994|ENST00000358321|SUSD2	ENSG00000099994|ENST00000358321|SUSD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.87890625	3	415.880267	1244.61897	0.12615	5.2463E-05	-3.6133	-0.0015027	-3.4872	-0.0014503	415.87890407402347	30.724	0.78984	30.575	30.219	31.009	-0.14952					56	18	5	0	0	0	1.0719	1	1967	1967		36.447	1.2947	1	1133000			50608	2111	35257	35310	55976	55976					0.006447995347571123
LYQTGSTEP	9	Unmodified	_LYQTGSTEP_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.2980651855469	2	498.237647	994.460741	0.013307	6.6299E-06	0.32323	0.00016104	0.33654	0.00016767	498.23764520149814	61.926	0.71302	61.699	61.336	62.049	-0.22663					35	18	3	0	0	0	0.023007	1	7160	7160		87.754	21.325	1	362500			50609	1886	35258	35311	55977	55977					-0.03671119444322812
LYQVRVTVV	9	Unmodified	_LYQVRVTVV_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8267822265625	2	538.826766	1075.63898	-0.88863	-0.00047882	0.49536	0.00026691	-0.39327	-0.0002119	538.8269211663855	55.038	1.1932	54.892	54.495	55.688	-0.14609					85	32	4	0	0	0	0.43973	2	5897	5884;5897		63.306	1.1989	1	6456400	+		50610	23574	35259	35312	55978;55979	55979					0.10418595265377917
LYQVRVTVV	9	Unmodified	_LYQVRVTVV_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8267211914062	2	538.826766	1075.63898	-0.4532	-0.0002442	-0.069249	-3.7313E-05	-0.52245	-0.00028151	538.826664240235	55.111	1.017	54.881	54.601	55.618	-0.23087					71	28	3	0	0	0	0.80658	1	5901	5901		38.806	0	1	7408700	+		50611	23574	35259	35312	55980	55980					0.10418595265377917
LYQVRVTVV	9	Unmodified	_LYQVRVTVV_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8265991210938	2	538.826766	1075.63898	-0.58398	-0.00031466	0.14991	8.0777E-05	-0.43407	-0.00023389	538.8267490736815	55.09	1.2157	54.884	54.502	55.718	-0.20613					83	33	4	0	0	0	0.80658	1	5898	5898		38.806	2.3594	1	7294600	+		50612	23574	35259	35312	55981	55981					0.10418595265377917
LYQVRVTVV	9	Unmodified	_LYQVRVTVV_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.826766	1075.63898	-0.13405	-7.2228E-05	-0.03306	-1.7813E-05	-0.16711	-9.0041E-05	538.826517077658	55.069	0.59555	55.069	54.831	55.427	0	0.10618	-0.0003594	NaN	63.306	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890520	+		50613	23574	35259	35312							0.10418595265377917
LYQVRVTVV	9	Unmodified	_LYQVRVTVV_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.826766	1075.63898	-0.66523	-0.00035845	0.56413	0.00030397	-0.1011	-5.4477E-05	538.8268431986224	55.192	0.70208	55.041	54.745	55.447	-0.15036	0.078218	0.00028416	NaN	63.306	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	990560	+		50614	23574	35259	35312							0.10418595265377917
LYQVRVTVV	9	Unmodified	_LYQVRVTVV_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.826766	1075.63898	-1.1252	-0.00060631	1.0891	0.00058683	-0.036155	-1.9481E-05	538.8270691559105	54.914	0.6357	55.012	54.696	55.332	0.098015	0.049136	0.00084988	NaN	63.306	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663750	+		50615	23574	35259	35312							0.10418595265377917
LYRAAPSNR	9	Unmodified	_LYRAAPSNR_					0	0	0			REV__ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	REV__ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2882690429688	2	524.28834	1046.56213	-0.42673	-0.00022373	-0.1702	-8.9236E-05	-0.59693	-0.00031296	524.2882290766548	28.432	0.77021	28.28	27.885	28.655	-0.15195					63	18	5	0	0	0	0.6504	1	1647	1647		49.442	0	1	4593400	+		50616	19053	35260	35313	55982	55982					0.04070796768883156
LYRDKWHDL	9	Unmodified	_LYRDKWHDL_					0	0	0			REV__ENST00000207636.9_1_22:19951681-19956256:+|nuORF	REV__ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.24267578125	3	415.884012	1244.63021	-0.069407	-2.8865E-05	3.2553	0.0013538	3.1859	0.0013249	415.88517479923405	35.319	0.71692	35.319	35.093	35.81	0					63	18	5	0	0	0	0.024484	1	2697	2697		37.812	17.781	1	1492600	+		50617	20944	35261	35314	55983	55983					0.017676216288919022
LYRDLLRA	8	Unmodified	_LYRDLLRA_					0	0	0		ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.77105712890625	2	510.303458	1018.59236	-0.85054	-0.00043403	3.3819	0.0017258	2.5314	0.0012918	510.3051653486275	83.302	1.761	83.329	82.445	84.206	0.02655					80	40	3	0	0	0	0.027866	1	10456	10456		68.485	10.673	1	342930			50618	10407	35262	35315	55984	55984					0.08381155434085485
LYRFSPLF	8	Unmodified	_LYRFSPLF_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|201|2|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|201|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2503051757812	2	521.789653	1041.56475	0.69869	0.00036457	2.1671	0.0011308	2.8658	0.0014954	521.7908929088824	71.242	1.2498	71.036	70.571	71.821	-0.20614					47	29	2	0	0	0	0.027866	1	8382	8382		33.516	0.022601	1	266630	+		50619	36253	35263	35316	55985	55985					0.04563252173852561
LYRGMTPTL	9	Unmodified	_LYRGMTPTL_					0	0	0		ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.7753295898438	2	526.283877	1050.5532	-1.2358	-0.00065038	1.1405	0.00060025	-0.095268	-5.0138E-05	526.2835751466469	80.507	0.21048	80.355	80.174	80.385	-0.15168					6	4	2	0	0	0	0.024288	1	9960	9960		71.877	22.436	1	34438			50620	9031	35264	35317	55986	55986					0.029946870881985888
LYRIRFYFPRW	11	Unmodified	_LYRIRFYFPRW_					0	0	0		JAK2|p.D194Efs*12|1|0.04|ENSG00000096968|chr9:5050798-5050799|-/AGGAAATATC|frameshift_variant;JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant;JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;ENSG00000096968|ENST00000381652|JAK2	JAK2|p.D194Efs*12|1|0.04|ENSG00000096968|chr9:5050798-5050799|-/AGGAAATATC|frameshift_variant	JAK2|p.D194Efs*12|1|0.04|ENSG00000096968|chr9:5050798-5050799|-/AGGAAATATC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.791259765625	3	539.633139	1615.87759	-0.29152	-0.00015731	-0.88969	-0.00048011	-1.1812	-0.00063742	539.6326239521615	59.01	0.35313	58.769	58.583	58.936	-0.24165					12	8	2	0	0	0	0.024886	1	6495	6495		6.3209	3.6328	1	274160			50621	2056	35265	35318	55987	55987					0.09428375567495095
LYRPGLGMA	9	Unmodified	_LYRPGLGMA_					0	0	0			REV__ENSG00000177854|ENST00000369982|TMEM187	REV__ENSG00000177854|ENST00000369982|TMEM187	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2658386230469	2	489.265487	976.516422	-0.89132	-0.00043609	-0.25197	-0.00012328	-1.1433	-0.00055937	489.2655824203169	55.918	2.8631	55.703	54.857	57.72	-0.21551					203	76	5	0	0	0	0.40179	1	6100	6100		65.803	2.8247	1	70664000	+		50622	27147	35266	35319	55988	55988					0.027224352623193226
LYRQFEEDYKQ	11	Unmodified	_LYRQFEEDYKQ_					0	0	0			REV__ENSG00000124207|ENST00000262982|CSE1L	REV__ENSG00000124207|ENST00000262982|CSE1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3011779785156	3	506.912296	1517.71506	0.24631	0.00012486	-0.53117	-0.00026926	-0.28486	-0.0001444	506.9113043072415	24.768	0.13803	24.846	24.731	24.869	0.078344					4	2	2	0	0	0	0.02484	1	1055	1055		22.562	10.629	1	11501	+		50623	22747	35267	35320	55989	55989					-0.02309097415809447
LYRRISPK	8	Unmodified	_LYRRISPK_					0	0	0		ENST00000326756.3_1_4:10448000-10448075:-|nuORF	ENST00000326756.3_1_4:10448000-10448075:-|nuORF	ENST00000326756.3_1_4:10448000-10448075:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7723999023438	2	516.819276	1031.624	0.036139	1.8677E-05	-3.8159	-0.0019722	-3.7798	-0.0019535	517.3203351733135	71.483	1.4589	71.208	70.655	72.113	-0.27509					80	34	4	0	0	0	0.027866	1	8476	8476		34.173	0	1	292590			50624	12284	35268	35321	55990	55990					0.10945148188034182
LYRTIDRG	8	Unmodified	_LYRTIDRG_					0	0	0			REV__ENSG00000138071|ENST00000260641|ACTR2	REV__ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25018310546875	2	497.277441	992.540328	-0.75255	-0.00037423	1.2828	0.00063789	0.53022	0.00026366	497.27750350606635	25.688	0.45531	25.461	25.19	25.645	-0.22683					16	10	3	0	0	0	0.027866	1	1223	1223		23.042	7.4007	1	109550	+		50625	23812	35269	35322	55991	55991					0.043759920203456204
LYSATFLLDTA	11	Unmodified	_LYSATFLLDTA_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|217|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|217|1|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|217|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	607.8482055664062	2	607.818804	1213.62306	-0.41191	-0.00025037	3.9397	0.0023946	3.5278	0.0021443	607.8214554326893	42.389	0.13666	42.257	42.149	42.285	-0.13219					5	3	2	0	0	0	0.024741	1	3860	3860		37.812	7.3079	1	30820			50626	17728	35270	35323	55992	55992					0.02478844237816702
LYSEASVALLK	11	Unmodified	_LYSEASVALLK_					0	0	0		nc|ENSG00000111670|Q3T906-2|GNPTAB;ENSG00000111670|ENST00000299314|GNPTAB	nc|ENSG00000111670|Q3T906-2|GNPTAB	nc|ENSG00000111670|Q3T906-2|GNPTAB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.3422241210938	2	597.342446	1192.67034	1.0604	0.00063341	-1.1015	-0.00065797	-0.04112	-2.4563E-05	597.3416569737102	63.628	1.0076	63.682	63.373	64.381	0.054104					75	27	4	0	0	0	0.32544	1	7377	7377		87.696	2.5356	1	3950200			50627	3133	35271	35324	55993	55993					0.08171123508805067
LYSEASVALLK	11	Unmodified	_LYSEASVALLK_					0	0	0		nc|ENSG00000111670|Q3T906-2|GNPTAB;ENSG00000111670|ENST00000299314|GNPTAB	nc|ENSG00000111670|Q3T906-2|GNPTAB	nc|ENSG00000111670|Q3T906-2|GNPTAB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	597.342446	1192.67034	-0.40594	-0.00024249	0.47174	0.00028179	0.065796	3.9303E-05	597.3426106904827	63.632	1.0832	63.632	63.301	64.384	0	0.003853	0.0007517	NaN	87.696	70	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3679600			50628	3133	35271	35324							0.08171123508805067
LYSKKGFFI	9	Unmodified	_LYSKKGFFI_					0	0	0		ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2821044921875	2	551.81841	1101.62227	0.01836	1.0131E-05	-3.5142	-0.0019392	-3.4958	-0.0019291	551.8164510566833	57.585	0.46004	57.41	57.111	57.571	-0.1749					19	11	2	0	0	0	0.024487	1	6430	6430		40.573	26.435	1	120060			50629	7481	35272	35325	55994	55994					0.07552094379434493
LYSKVWLL	8	Unmodified	_LYSKVWLL_					0	0	0			REV__ENST00000246868.6_1_7:66452970-66453129:-|nuORF	REV__ENST00000246868.6_1_7:66452970-66453129:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2871398925781	2	511.307678	1020.6008	-0.21937	-0.00011217	0.15655	8.0043E-05	-0.062829	-3.2125E-05	511.30751868327155	56.517	0.55446	56.35	56.082	56.637	-0.1672					31	13	3	0	0	0	0.027866	1	6098	6098		44.117	13.613	1	338590	+		50630	29477	35273	35326	55995	55995					0.09132709350717505
LYSLLVISSC	10	Unmodified	_LYSLLVISSC_					0	0	0			REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.2978515625	2	549.299193	1096.58383	-0.45802	-0.00025159	-2.4615	-0.0013521	-2.9195	-0.0016037	549.2976152009451	95.616	0.87221	95.464	95.055	95.927	-0.15186					45	19	4	0	0	0	0.82838	1	11792	11792		58.782	7.4465	1	345640	+		50631	30700	35274	35327	55996	55996					0.03940420682602053
LYSLLVISSC	10	Unmodified	_LYSLLVISSC_					0	0	0			REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.299193	1096.58383	-0.16191	-8.8937E-05	-2.58	-0.0014172	-2.7419	-0.0015061	549.2972878179968	95.525	0.6554	95.388	95.112	95.767	-0.13689	-0.029233	0.00041109	NaN	58.782	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252640	+		50632	30700	35274	35327							0.03940420682602053
LYSLLVISSC	10	Unmodified	_LYSLLVISSC_					0	0	0			REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.299193	1096.58383	0.55137	0.00030287	-3.5717	-0.001962	-3.0204	-0.0016591	549.2970469662937	95.523	0.78281	95.4	95.116	95.899	-0.12251	-0.017488	-0.00067845	NaN	58.782	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330700	+		50633	30700	35274	35327							0.03940420682602053
LYSLLVISSC	10	Unmodified	_LYSLLVISSC_					0	0	0			REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	REV__ENST00000346166.7_1_13:26787887-26787959:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	549.299193	1096.58383	-0.45802	-0.00025159	-2.4615	-0.0013521	-2.9195	-0.0016037	549.2976152009451	95.616	0.87221	95.464	95.055	95.927	-0.15186	0.046721	0.00054131	NaN	58.782	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345640	+		50634	30700	35274	35327							0.03940420682602053
LYSNPSVFV	9	Unmodified	_LYSNPSVFV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2689819335938	2	513.26875	1024.52295	-1.1212	-0.00057548	-0.31309	-0.0001607	-1.4343	-0.00073618	513.2691324119681	79.639	3.0855	79.466	78.694	81.78	-0.17226					131	74	5	0	0	0	0.39228	1	9888	9888		66.429	3.123	1	5750600			50635	1562	35275	35328	55997	55997					0.011666516946661432
LYSNPSVFV	9	Unmodified	_LYSNPSVFV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.2684326171875	2	513.26875	1024.52295	-0.52508	-0.00026951	-0.8309	-0.00042647	-1.356	-0.00069598	513.2687894126938	79.477	1.6634	79.495	78.946	80.609	0.018677					91	39	4	0	0	0	0.16468	1	9773	9773		96.19	5.4138	1	7139400			50636	1562	35275	35328	55998	55998					0.011666516946661432
LYSNPSVFV	9	Unmodified	_LYSNPSVFV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.26904296875	2	513.26875	1024.52295	0.55057	0.00028259	-0.96537	-0.00049549	-0.4148	-0.0002129	513.2683446041391	79.629	2.1968	79.382	77.877	80.074	-0.2465					114	51	5	0	0	0	0.29158	2	9536	9500;9536		76.774	2.7994	1	6442700			50637	1562	35275	35328	55999;56000	56000					0.011666516946661432
LYSNPSVFV	9	Unmodified	_LYSNPSVFV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.269287109375	2	513.26875	1024.52295	0.18164	9.3229E-05	-0.47046	-0.00024147	-0.28882	-0.00014824	513.268486772638	79.61	1.2475	79.391	78.791	80.038	-0.21923					79	29	4	0	0	0	0.29158	1	9571	9571		76.774	7.9873	1	6971000			50638	1562	35275	35328	56001	56001					0.011666516946661432
LYSNPSVFV	9	Unmodified	_LYSNPSVFV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2694091796875	2	513.26875	1024.52295	0.14088	7.2312E-05	-0.40633	-0.00020856	-0.26544	-0.00013624	513.2684968693561	79.52	1.3348	79.369	78.737	80.071	-0.15051					83	31	5	0	0	0	0.17822	1	9483	9483		93.195	10.89	1	7141300			50639	1562	35275	35328	56002	56002					0.011666516946661432
LYSRHGQPS	9	Unmodified	_LYSRHGQPS_					0	0	0			REV__ENST00000522601.5_1_8:8086126-8093767:+|nuORF	REV__ENST00000522601.5_1_8:8086126-8093767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7646484375	2	522.764697	1043.51484	-1.161	-0.00060695	0.61606	0.00032206	-0.54498	-0.0002849	522.7650175718356	29.993	0.98787	30.071	29.724	30.712	0.078344					53	23	4	0	0	0	0.27161	1	1835	1835		79.451	5.196	1	1722000	+		50640	34339	35276	35329	56003	56003					-0.005174825020958451
LYSSPHHVA	9	Unmodified	_LYSSPHHVA_					0	0	0		ENST00000585159.5_1_18:70204665-70204911:-|nuORF	ENST00000585159.5_1_18:70204665-70204911:-|nuORF	ENST00000585159.5_1_18:70204665-70204911:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.7550354003906	2	505.756341	1009.49813	0.68704	0.00034748	-0.52131	-0.00026366	0.16573	8.3819E-05	505.7559582522939	18.726	0.59295	18.57	18.346	18.939	-0.15637					26	11	4	0	0	0	0.92825	1	344	344		30.504	1.3336	1	200900			50641	17222	35277	35330	56004	56004					-0.006239833880499646
LYSSPHHVA	9	Unmodified	_LYSSPHHVA_					0	0	0		ENST00000585159.5_1_18:70204665-70204911:-|nuORF	ENST00000585159.5_1_18:70204665-70204911:-|nuORF	ENST00000585159.5_1_18:70204665-70204911:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.756341	1009.49813	3.7227	0.0018828	-4.2625	-0.0021558	-0.5398	-0.00027301	505.75404844000855	18.643	0.39256	18.706	18.501	18.893	0.063307	0.068297	-0.0033347	NaN	30.504	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23916			50642	17222	35277	35330							-0.006239833880499646
LYSTSGLYR	9	Unmodified	_LYSTSGLYR_					0	0	0		nc|ENSG00000164970|Q8IW50-7|FAM219A	nc|ENSG00000164970|Q8IW50-7|FAM219A	nc|ENSG00000164970|Q8IW50-7|FAM219A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2776489257812	2	530.277106	1058.53966	-0.70494	-0.00037381	1.049	0.00055626	0.34407	0.00018245	530.2775091347208	57.991	2.1849	57.816	57.268	59.453	-0.1749					150	59	4	0	0	0	0.23085	1	6488	6488		84.916	0	1	41030000			50643	18461	35278	35331	56005	56005					0.012731525806202626
LYSTYLEL	8	Unmodified	_LYSTYLEL_					0	0	0			REV__ENSG00000132446|ENST00000359202|FTHL17	REV__ENSG00000132446|ENST00000359202|FTHL17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2917785644531	2	501.263133	1000.51171	-0.89783	-0.00045005	-0.97283	-0.00048764	-1.8707	-0.00093769	501.2609380839805	84.116	1.1032	84.043	83.486	84.589	-0.072769					50	25	4	0	0	0	0.027866	1	10492	10492		42.474	8.9589	1	82695	+		50644	23281	35279	35332	56006	56006					0.011478296005293487
LYTAIAFLGV	10	Unmodified	_LYTAIAFLGV_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2737426757812	2	534.310418	1066.60628	-1.068	-0.00057064	-3.1952	-0.0017072	-4.2632	-0.0022779	534.3086213532144	94.158	0.85186	94.164	93.811	94.663	0.0059814					39	20	2	0	0	0	0.03519	1	11966	11966		38.806	23.941	1	1098800			50645	5835	35280	35333	56007	56007					0.07564388142532152
LYTAIAFLGV	10	Unmodified	_LYTAIAFLGV_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.310418	1066.60628	-1.1669	-0.00062351	-3.9364	-0.0021032	-5.1033	-0.0027268	534.3081566856547	93.91	0.60198	93.77	93.528	94.13	-0.13995	-0.19207	-0.00034366	NaN	30.504	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203460			50646	5835	35280	35333							0.07564388142532152
LYTAIAFLGV	10	Unmodified	_LYTAIAFLGV_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.310418	1066.60628	-0.13591	-7.2619E-05	-5.0743	-0.0027112	-5.2102	-0.0027839	534.3076471071275	93.986	0.63666	93.864	93.583	94.219	-0.12215	-0.09831	-0.0015597	NaN	30.504	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216170			50647	5835	35280	35333							0.07564388142532152
LYTAIAFLGV	10	Unmodified	_LYTAIAFLGV_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.310418	1066.60628	-0.48421	-0.00025872	-4.5255	-0.002418	-5.0097	-0.0026768	534.3078826752565	94.047	0.60239	93.9	93.566	94.169	-0.14771	-0.062355	-0.00097326	NaN	30.504	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199570			50648	5835	35280	35333							0.07564388142532152
LYTGATSRPV	10	Unmodified	_LYTGATSRPV_					0	0	0			REV__ENST00000299413.6_1_11:35828022-35828094:+|nuORF	REV__ENST00000299413.6_1_11:35828022-35828094:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7889404296875	2	532.790381	1063.56621	-0.47611	-0.00025367	0.12364	6.5872E-05	-0.35247	-0.0001878	532.7901032936312	64.277	1.1155	64.049	63.74	64.856	-0.22774					70	27	5	0	0	0	0.71272	1	7289	7289		66.429	16.988	1	3120300	+		50649	30032	35281	35334	56008	56008					0.036968414719467546
LYTKHVGLY	9	Unmodified	_LYTKHVGLY_					0	0	0			REV__ENST00000398868.7_1_11:63392322-63392604:-|nuORF	REV__ENST00000398868.7_1_11:63392322-63392604:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.3037109375	2	547.305667	1092.59678	-1.034	-0.00056593	-2.9568	-0.0016183	-3.9909	-0.0021842	547.3040135815362	37.253	0.96876	37.034	36.647	37.615	-0.2195					55	24	3	0	0	0	0.88411	1	2994	2994		33.516	3.1979	1	4289300	+		50650	31813	35282	35335	56009	56009					0.05418619857005069
LYTLYTVI	8	Unmodified	_LYTLYTVI_					0	0	0		ENSG00000181072|ENST00000680005|CHRM2	ENSG00000181072|ENST00000680005|CHRM2	ENSG00000181072|ENST00000680005|CHRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7845764160156	2	493.283869	984.553185	0.0085361	4.2107E-06	-2.8093	-0.0013858	-2.8007	-0.0013816	493.28256096841335	78.754	0.25194	78.754	78.531	78.783	0					7	5	2	0	0	0	0.027866	1	9738	9738		44.531	3.7529	1	239680			50651	9021	35283	35336	56010	56010					0.060290103598504174
LYTNDSIFLK	10	Unmodified	_LYTNDSIFLK_					0	0	0		nc|ENSG00000163155|Q96S90-2|LYSMD1;ENSG00000163155|ENST00000368908|LYSMD1	nc|ENSG00000163155|Q96S90-2|LYSMD1	nc|ENSG00000163155|Q96S90-2|LYSMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	405.22029	1212.63904	0.82863	0.00033578	2.5504	0.0010335	3.379	0.0013692	405.2219924079152	26.953	0.28494	27.035	26.923	27.208	0.081293					10	7	2	0	0	0	0.03519	1	1364	1364		46.457	12.535	1	112150			50652	7043	35284	35337	56011	56011					0.04122550474698983
LYTNWYLE	8	Unmodified	_LYTNWYLE_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7806396484375	2	551.266207	1100.51786	-0.5372	-0.00029614	-3.2183	-0.0017741	-3.7555	-0.0020703	551.2642227039235	45.379	0.67933	45.168	44.91	45.589	-0.21109					34	19	2	0	0	0	0.027866	1	4321	4321		38.806	7.2763	1	3683700			50653	18056;3969	35285	35338	56012	56012					-0.028376521679547295
LYTQKLKK	8	Unmodified	_LYTQKLKK_					0	0	0			REV__nc|ENSG00000255374|P59539|TAS2R45	REV__nc|ENSG00000255374|P59539|TAS2R45	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.32366943359375	2	511.32386	1020.63317	-0.48996	-0.00025053	0.29056	0.00014857	-0.19941	-0.00010196	511.32389583897555	20.767	0.74419	20.543	20.067	20.812	-0.22344					37	14	3	0	0	0	0.71063	1	565	565		66.429	7.6473	1	185120	+		50654	37176	35286	35339	56013	56013					0.12367496753699925
LYTQKLKK	8	Unmodified	_LYTQKLKK_					0	0	0			REV__nc|ENSG00000255374|P59539|TAS2R45	REV__nc|ENSG00000255374|P59539|TAS2R45	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.32386	1020.63317	0.062544	3.198E-05	-0.31754	-0.00016237	-0.255	-0.00013039	511.3235939929337	20.637	0.73429	20.469	20.002	20.736	-0.16774	-0.03782	-4.0719E-05	NaN	66.429	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190070	+		50655	37176	35286	35339							0.12367496753699925
LYTQKLKK	8	Unmodified	_LYTQKLKK_					0	0	0			REV__nc|ENSG00000255374|P59539|TAS2R45	REV__nc|ENSG00000255374|P59539|TAS2R45	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.32386	1020.63317	0.57013	0.00029152	-0.76046	-0.00038884	-0.19033	-9.7321E-05	511.32332230198057	20.705	0.7886	20.509	20.04	20.828	-0.19577	0.0016879	-0.00049367	NaN	66.429	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175790	+		50656	37176	35286	35339							0.12367496753699925
LYTQKLKK	8	Unmodified	_LYTQKLKK_					0	0	0			REV__nc|ENSG00000255374|P59539|TAS2R45	REV__nc|ENSG00000255374|P59539|TAS2R45	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	511.32386	1020.63317	-0.48996	-0.00025053	0.29056	0.00014857	-0.19941	-0.00010196	511.32389583897555	20.767	0.74419	20.543	20.067	20.812	-0.22344	0.036132	0.00058115	NaN	66.429	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185120	+		50657	37176	35286	35339							0.12367496753699925
LYVDKSLN	8	Unmodified	_LYVDKSLN_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5;chr18:63477292-63484422|492|29.92|0.95|4.98|+|ENST00000424602|SERPINB5,SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7867736816406	2	476.260925	950.507297	1.5784	0.00075175	-0.72898	-0.00034719	0.84945	0.00040456	476.26072211524246	86.063	0.73186	86.063	85.829	86.561	0					17	16	2	0	0	0	0.027866	1	10788	10788		30.504	8.5438	1	55465			50658	10461	35287	35340	56014	56014					0.03006365177623138
LYVFRHFKP	9	Unmodified	_LYVFRHFKP_					0	0	0			REV__ENSG00000255690|ENST00000539664|TRIL	REV__ENSG00000255690|ENST00000539664|TRIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	603.7550048828125	2	603.842751	1205.67095	-0.86307	-0.00052116	-3.5167	-0.0021235	-4.3797	-0.0026447	603.8407381924628	47.896	0.445	47.799	47.557	48.002	-0.097553					18	11	2	0	0	0	0.024436	1	4717	4717		16.473	0	1	177100	+		50659	29072	35288	35341	56015	56015					0.07634007739170556
LYVFVGERF	9	Unmodified	_LYVFVGERF_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.3143310546875	2	565.305667	1128.59678	0.66195	0.0003742	-3.2296	-0.0018257	-2.5677	-0.0014515	565.3043577127156	59.585	0.5926	59.409	59.037	59.629	-0.1761					38	14	4	0	0	0	0.024487	1	6571	6571		31.955	0	1	423600			50660	8388	35289	35342	56016	56016					0.03762619857002392
LYVFVGERF	9	Unmodified	_LYVFVGERF_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.305667	1128.59678	0.61842	0.0003496	-0.77437	-0.00043776	-0.15595	-8.8159E-05	565.3051773647386	59.437	1.105	59.437	58.999	60.104	0	0.015977	-0.00024939	NaN	40.573	71	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2732600			50661	8388	35289	35342							0.03762619857002392
LYVFVGERF	9	Unmodified	_LYVFVGERF_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.305667	1128.59678	0.38726	0.00021892	-0.48922	-0.00027656	-0.10195	-5.7633E-05	565.3053038475201	59.583	1.1032	59.383	59.028	60.132	-0.20016	-0.037995	7.3012E-05	NaN	40.573	76	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2601200			50662	8388	35289	35342							0.03762619857002392
LYVFVGERF	9	Unmodified	_LYVFVGERF_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.305667	1128.59678	-0.45638	-0.000258	0.35178	0.00019886	-0.1046	-5.9133E-05	565.3057712536561	59.282	1.1382	59.368	58.957	60.095	0.085682	-0.052863	0.0010238	NaN	40.573	71	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2777700			50663	8388	35289	35342							0.03762619857002392
LYVISGDGRV	10	Unmodified	_LYVISGDGRV_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7979125976562	2	539.798206	1077.58186	-0.36904	-0.00019921	4.2587	0.0022988	3.8896	0.0020996	539.8000815017555	98.888	0.53191	98.898	98.736	99.268	0.010239					19	11	2	0	0	0	0.60198	1	12636	12636		76.774	12.567	1	40261	+		50664	26915	35290	35343	56017	56017					0.0461712798901317
LYVISGDGRV	10	Unmodified	_LYVISGDGRV_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	539.798206	1077.58186	-0.36904	-0.00019921	4.2587	0.0022988	3.8896	0.0020996	539.8000815017555	98.888	0.53191	98.898	98.736	99.268	0.010239	0	0	NaN	76.774	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40261	+		50665	26915	35290	35343							0.0461712798901317
LYVLALHEV	9	Unmodified	_LYVLALHEV_					0	0	0		nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3;nc|ENSG00000113389|P17342-3|NPR3;ENST00000506712.1_1_5:32710768-32783175:+|nuORF	nc|ENSG00000113389|P17342-2|NPR3	nc|ENSG00000113389|P17342-2|NPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7307739257812	2	528.808042	1055.60153	-0.051542	-2.7256E-05	-3.6312	-0.0019202	-3.6827	-0.0019475	528.8060277802316	50.776	0.66727	50.5	50.262	50.929	-0.27643					31	17	2	0	0	0	0.024466	1	5232	5232		25.45	0	1	1044600			50666	3290	35291	35344	56018	56018					0.07595503999755238
LYVPRQFGK	9	Unmodified	_LYVPRQFGK_					0	0	0			REV__nc|ENSG00000289690|Q7L2J0-2|MEPCE	REV__nc|ENSG00000289690|Q7L2J0-2|MEPCE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3224487304688	2	554.319109	1106.62366	0.30658	0.00016994	-1.5796	-0.00087558	-1.273	-0.00070564	554.3181384891261	68.363	0.37314	68.382	68.237	68.61	0.018921					16	9	2	0	0	0	0.024535	1	8090	8090		18.324	0	1	257950	+		50667	24513	35292	35345	56019	56019					0.07461728468183537
LYVRRFDPAH	10	Unmodified	_LYVRRFDPAH_					0	0	0			REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.1949157714844	3	425.231523	1272.67274	0.54496	0.00023173	2.5816	0.0010978	3.1265	0.0013295	425.23256682707716	22.819	1.1486	22.631	22.102	23.25	-0.18894					57	24	4	0	0	0	0.03519	1	830	830		24.232	0	1	237400	+		50668	20156	35293	35346	56020	56020					0.047310167571367856
LYVRRQTAW	9	Unmodified	_LYVRRQTAW_					0	0	0		GREB1|p.R1454W|1|0.15|ENSG00000196208|chr2:11627015-11627015|C/T|missense_variant	GREB1|p.R1454W|1|0.15|ENSG00000196208|chr2:11627015-11627015|C/T|missense_variant	GREB1|p.R1454W|1|0.15|ENSG00000196208|chr2:11627015-11627015|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.755615234375	2	596.832914	1191.65128	0.15752	9.401E-05	-0.43738	-0.00026105	-0.27987	-0.00016703	596.8325673870778	59.474	0.52446	59.276	59.05	59.575	-0.19742					22	12	2	0	0	0	0.024397	1	6576	6576		47.657	14.845	1	401340			50669	17693	35294	35347	56021	56021					0.06311631728431166
LYVRRQTAW	9	Unmodified	_LYVRRQTAW_					0	0	0		GREB1|p.R1454W|1|0.15|ENSG00000196208|chr2:11627015-11627015|C/T|missense_variant	GREB1|p.R1454W|1|0.15|ENSG00000196208|chr2:11627015-11627015|C/T|missense_variant	GREB1|p.R1454W|1|0.15|ENSG00000196208|chr2:11627015-11627015|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.2811279296875	2	596.832914	1191.65128	-0.16882	-0.00010076	0.022206	1.3253E-05	-0.14662	-8.7506E-05	596.8327949084543	59.215	0.60525	59.033	58.75	59.356	-0.18134					30	14	3	0	0	0	0.024292	1	6566	6566		68.787	25.161	1	359220			50670	17693	35294	35347	56022	56022					0.06311631728431166
LYVVRQAADA	10	Unmodified	_LYVVRQAADA_					0	0	0			REV__nc|ENSG00000182612|Q9H1Z9|TSPAN10	REV__nc|ENSG00000182612|Q9H1Z9|TSPAN10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.2614135742188	2	553.303655	1104.59276	-0.54499	-0.00030154	-1.5972	-0.00088371	-2.1421	-0.0011853	553.3028494487581	45.016	0.43618	44.763	44.508	44.944	-0.25252					20	10	3	0	0	0	0.03519	1	4231	4231		30.318	0	1	231810	+		50671	27497	35295	35348	56023	56023					0.044645303632933064
LYWFTLYQ	8	Unmodified	_LYWFTLYQ_					0	0	0		ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.81103515625	2	567.286943	1132.55933	0.71636	0.00040638	1.4255	0.00080864	2.1418	0.001215	567.7880079986661	71.246	0.11438	70.958	70.883	70.998	-0.28858					4	2	2	0	0	0	0.027866	1	8593	8593		26.796	0	1	33505			50672	4283	35296	35349	56024	56024					-0.001644714086296517
LYWRRKQRKEL	11	Unmodified	_LYWRRKQRKEL_					0	0	0		nc|ENSG00000154134|Q96MS0-2|ROBO3;ENSG00000154134|ENST00000397801|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.311279296875	3	525.979198	1574.91576	0.18289	9.6198E-05	-0.29008	-0.00015258	-0.10719	-5.6378E-05	526.3134871446294	102.28	0.32542	102.15	101.99	102.31	-0.1293					12	7	2	0	0	0	1.1135	1	12694	12694		6.001	2.5923	1	108170			50673	6385	35297	35350	56025	56025					0.15130261482158858
LYWSLHQT	8	Unmodified	_LYWSLHQT_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.7791137695312	2	524.266542	1046.51853	-0.86364	-0.00045278	0.51939	0.0002723	-0.34426	-0.00018048	524.7694909888952	78.687	0.7552	78.687	78.363	79.119	0					25	17	2	0	0	0	0.027866	1	9702	9702		57.811	20.652	1	211860			50674	7644	35298	35351	56026	56026					-0.0028681272824542248
LYYCFSNL	8	Unmodified	_LYYCFSNL_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.287109375	2	511.736228	1021.4579	1.3561	0.00069399	4.0673	0.0020814	5.4235	0.0027754	511.73808199946603	59.043	0.57486	58.856	58.538	59.113	-0.18705					28	15	2	0	0	0	0.027866	1	6652	6652		33.516	24.693	1	348200			50675	4843	35299	35352	56027	56027					-0.05196666102835934
LYYDVQVAGL	10	Unmodified	_LYYDVQVAGL_					0	0	0			REV__ENSG00000167701|ENST00000394955|GPT	REV__ENSG00000167701|ENST00000394955|GPT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.797119140625	2	570.800414	1139.58628	-0.97548	-0.0005568	-3.5282	-0.0020139	-4.5037	-0.0025707	570.7980792204012	57.231	1.0329	57.326	56.47	57.503	0.095306					74	28	5	0	0	0	1.0002	1	6356	6356		45.972	4.5456	1	2319200	+		50676	26181	35300	35353	56028	56028					0.022065924119033298
LYYQDEPQ	8	Unmodified	_LYYQDEPQ_					0	0	0		ENST00000475556.1_1_X:106331789-106358666:-|nuORF;nc|ENSG00000089682|Q96IZ5-2|RBM41;nc|ENSG00000089682|Q96IZ5|RBM41	ENST00000475556.1_1_X:106331789-106358666:-|nuORF	ENST00000475556.1_1_X:106331789-106358666:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3255615234375	2	528.237647	1054.46074	0.15429	8.1503E-05	2.8366	0.0014984	2.9909	0.0015799	528.2389635837166	70.88	3.2929	70.89	70.306	73.599	0.010735					151	83	3	0	0	0	0.027866	1	8694	8694		65.803	0	1	390900			50677	15062	35301	35354	56029	56029					-0.06431119444323485
LYYQSLLN	8	Unmodified	_LYYQSLLN_					0	0	0			REV__ENST00000374707.1_1_9:108301561-108308663:+|nuORF	REV__ENST00000374707.1_1_9:108301561-108308663:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2794189453125	2	507.26875	1012.52295	-0.55145	-0.00027973	-3.9284	-0.0019927	-4.4798	-0.0022725	507.2673341008553	62.465	0.97506	62.528	62.16	63.135	0.062763					40	24	3	0	0	0	0.027866	1	7167	7167		37.028	0	1	980740	+		50678	31305	35302	35355	56030	56030					0.017186516946594566
LYYREILV	8	Unmodified	_LYYREILV_					0	0	0		nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4	nc|ENSG00000137265|Q15306-2|IRF4	nc|ENSG00000137265|Q15306-2|IRF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.8060302734375	2	534.808042	1067.60153	-1.2211	-0.00065303	-2.7049	-0.0014466	-3.926	-0.0020996	534.8065637949222	80.353	0.94217	80.375	80.063	81.005	0.021446					48	22	3	0	0	0	0.68164	1	9911	9911		68.787	10.976	1	1797000			50679	5107	35303	35356	56031	56031					0.07043503999739187
LYYRYGSW	8	Unmodified	_LYYRYGSW_					0	0	0		nc|ENSG00000091181|Q01344-3|IL5RA;nc|ENSG00000091181|Q01344-2|IL5RA;nc|ENSG00000091181|Q01344-4|IL5RA;ENSG00000091181|ENST00000446632|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.831298828125	2	554.266542	1106.51853	-0.44559	-0.00024697	1.318	0.00073053	0.87243	0.00048356	554.7686359278105	48.91	0.28743	48.728	48.558	48.845	-0.18206					16	7	3	0	0	0	0.027866	1	4849	4849		20.482	0	1	104140			50680	1958	35304	35357	56032	56032					-0.030468127282347268
MAAAAGMLLL	10	Unmodified	_MAAAAGMLLL_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2818603515625	2	481.264099	960.513645	-1.0133	-0.00048769	2.0088	0.00096674	0.99542	0.00047906	481.2649869421693	46.32	0.32055	46.168	45.989	46.31	-0.15157					11	8	2	0	0	0	0.03519	1	4552	4552		35.201	2.3883	1	119280			50681	618	35305	35358	56033	56033					0.03180843813140655
MAAALPRT	8	Unmodified	_MAAALPRT_					0	0	0		nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2483215332031	2	415.73128	829.448008	-0.33821	-0.0001406	-2.4327	-0.0010113	-2.7709	-0.0011519	415.73003216089836	36.172	0.70453	36.172	35.769	36.474	0					29	19	2	0	0	0	0.027866	1	2789	2789		24.203	16.512	1	248320			50682	5237	35306	35359	56034	56034					0.026461906824579273
MAADLLTHIN	10	Unmodified	_MAADLLTHIN_					0	0	0			REV__nc|ENSG00000162298|Q86TM6-2|SYVN1;REV__ENST00000530451.1_1_11:64889655-64897376:-|nuORF	REV__nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.8552856445312	2	549.784241	1097.55393	-0.63825	-0.0003509	1.9786	0.0010878	1.3403	0.00073689	549.7857248194499	79.778	0.33703	79.778	79.616	79.953	0					10	7	2	0	0	0	0.03519	1	9906	9906		44.377	0	1	87183	+		50683	25425;34539	35307	35360	56035	56035					0.009054817372543766
MAALTSESM	9	Unmodified	_MAALTSESM_					0	0	0		ENST00000262134.9_1_16:55608546-55608579:+|nuORF	ENST00000262134.9_1_16:55608546-55608579:+|nuORF	ENST00000262134.9_1_16:55608546-55608579:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7553405761719	2	470.709353	939.404154	0.42003	0.00019771	-1.8075	-0.0008508	-1.3874	-0.00065308	470.7091688299492	37.549	0.18708	37.581	37.413	37.6	0.032269					6	4	2	0	0	0	0.024262	1	3000	3000		38.806	9.6566	1	43480			50684	11489	35308	35361	56036	56036					-0.06797206596854721
MAALVPIPALR	11	Unmodified	_MAALVPIPALR_					0	0	0		nc|ENSG00000117425|Q9Y6C5-2|PTCH2;ENSG00000117425|ENST00000372192|PTCH2	nc|ENSG00000117425|Q9Y6C5-2|PTCH2	nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.3529052734375	2	576.352094	1150.68964	-1.7764	-0.0010238	4.3084	0.0024832	2.532	0.0014594	576.3545094797714	44.663	0.79963	44.663	44.348	45.147	0					63	22	4	0	0	0	0.81602	1	4280	4280		56.721	1.9447	1	5674200			50685	3627	35309	35362	56037	56037					0.12031801318698854
MAAMGLWPKP	10	Unmodified	_MAAMGLWPKP_					0	0	0			REV__ENST00000444465.1_1_6:166322452-166324410:-|nuORF	REV__ENST00000444465.1_1_6:166322452-166324410:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.8035278320312	2	551.282823	1100.55109	0.1595	8.7931E-05	0.74258	0.00040937	0.90208	0.0004973	551.2830708525174	57.355	0.39835	57.153	56.996	57.395	-0.20209					17	10	2	0	0	0	0.03519	1	6289	6289		29.15	3.6994	1	760120	+		50686	32592	35310	35363	56038	56038					0.004839350787506191
MAANAQKN	8	Unmodified	_MAANAQKN_					0	0	0		ENST00000371870.3_1_1:47799617-47838812:+|nuORF;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1;CMPK1|p.F121L|1|0.11|ENSG00000162368|chr1:47372999-47372999|C/A|missense_variant;nc|ENSG00000162368|P30085-2|CMPK1	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.21881103515625	2	424.20817	846.401786	0.88793	0.00037667	-4.0908	-0.0017354	-3.2029	-0.0013587	424.20627569687207	98.382	0.29051	98.38	98.224	98.515	-0.0020752					8	6	2	0	0	0	0.027866	1	12478	12478		57.811	22.611	1	41714			50687	6929	35311	35364	56039	56039					-0.027558742196447383
MAAVQRKLY	9	Unmodified	_MAAVQRKLY_					0	0	0		nc|ENSG00000186231|Q96NJ5-3|KLHL32;nc|ENSG00000186231|Q96NJ5-2|KLHL32;ENSG00000186231|ENST00000369261|KLHL32	nc|ENSG00000186231|Q96NJ5-3|KLHL32	nc|ENSG00000186231|Q96NJ5-3|KLHL32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.2857666015625	2	540.305144	1078.59573	-0.85342	-0.00046111	4.3815	0.0023674	3.5281	0.0019063	540.3074969134098	22.623	0.5514	22.437	22.094	22.646	-0.18539					23	11	3	0	0	0	0.024386	1	808	808		33.516	0	1	89991			50688	9532	35312	35365	56040	56040					0.05958082216443472
MACLGNDLNR	10	Carbamidomethyl (C)	_MAC(Carbamidomethyl (C))LGNDLNR_	MAC(1)LGNDLNR		MAC(93)LGNDLNR		0	1	0			REV__ENST00000517419.5_1_6:112041237-112081100:-|nuORF	REV__ENST00000517419.5_1_6:112041237-112081100:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.266357421875	2	582.268432	1162.52231	-1.5993	-0.0009312	-2.269	-0.0013212	-3.8683	-0.0022524	582.2671918491112	61.932	1.0665	61.754	61.162	62.229	-0.17781					76	26	5	0	0	0	0.45367	1	6949	6949		93.195	12.741	1	3266800	+		50689	34215	35313	35366	56041	56041	451				-0.0524483428835083
MACVGRTK	8	Unmodified	_MACVGRTK_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.7323303222656	2	433.222765	864.430978	-0.4026	-0.00017441	-3.1503	-0.0013648	-3.5529	-0.0015392	433.22149933925385	33.436	0.43739	33.442	33.288	33.726	0.0066261					14	11	2	0	0	0	0.027866	1	2417	2417		30.504	3.7075	1	46783			50690	362	35314	35367	56042	56042					-0.006660531950274162
MADTLFERAT	10	Unmodified	_MADTLFERAT_					0	0	0		nc|ENSG00000065609|O60641-3|SNAP91;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.2435302734375	2	577.779156	1153.54376	-0.39611	-0.00022886	-3.2619	-0.0018846	-3.658	-0.0021135	577.776705617416	65.366	0.40627	65.128	64.886	65.293	-0.23765					17	9	3	0	0	0	0.03519	1	7473	7473		49.536	20.386	1	112190			50691	1312	35315	35368	56043	56043					-0.026871259879726495
MAEESSMD	8	Unmodified	_MAEESSMD_					0	0	0		nc|ENSG00000005436|P16383-3|GCFC2	nc|ENSG00000005436|P16383-3|GCFC2	nc|ENSG00000005436|P16383-3|GCFC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.27435302734375	2	450.159693	898.304834	-0.16876	-7.5971E-05	1.6358	0.00073635	1.467	0.00066038	450.1606625517469	92.267	0.34778	92.259	92.005	92.353	-0.0082855					11	8	2	0	0	0	0.027866	1	11661	11661		19.36	5.5846	1	50841			50692	18028	35316	35369	56044	56044					-0.1483864928161438
MAELTDLGK	9	Unmodified	_MAELTDLGK_					0	0	0		ENSG00000124571|ENST00000265351|XPO5;ENST00000455854.2_1_6:43493558-43493747:-|nuORF	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7738342285156	2	489.252243	976.489932	-0.24415	-0.00011945	0.42265	0.00020678	0.1785	8.7332E-05	489.25219070763796	65.461	0.86071	65.21	64.905	65.766	-0.25112					49	20	4	0	0	0	0.024263	1	7509	7509		60.972	0	1	2787100			50693	4060	35317	35370	56045	56045					0.00074701580308556
MAEMQRVW	8	Unmodified	_MAEMQRVW_					0	0	0		ENSG00000118193|ENST00000367350|KIF14;chr1:200600113-200600356|478|16.15|0.76|4.4|-|1|KIF14,KIF14|1	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2791748046875	2	525.746605	1049.47866	-0.47566	-0.00025008	-1.5357	-0.00080742	-2.0114	-0.0010575	525.7454703624738	87.385	0.54195	87.385	87.109	87.651	0					14	12	2	0	0	0	0.027866	1	10964	10964		25.45	0	1	61570			50694	3670	35318	35371	56046	56046					-0.04410398994832576
MAERPEDL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MAERPEDL_					1	0	0		ENST00000479871.1_1_9:116172333-116172573:-|nuORF;ENSG00000148229|ENST00000374171|POLE3	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2936706542969	2	501.731674	1001.4488	-0.20658	-0.00010365	4.3491	0.0021821	4.1426	0.0020784	501.7336536162607	78.21	0.67648	77.951	77.532	78.209	-0.25839					30	15	3	0	0	0	0.027866	1	9298	9298		111.65	37.132	1	238800			50695	6013	35319	35372	56047	56047					-0.051870594591719055
MAFWLPTIDD	10	Unmodified	_MAFWLPTIDD_					0	0	0		ENST00000487402.1_1_3:52291508-52301068:-|nuORF;ENSG00000164091|ENST00000296490|WDR82	ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENST00000487402.1_1_3:52291508-52301068:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	403.5291748046875	3	403.526725	1207.55835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.135	1	17.893	17.393	18.393	-0.24256								0	0	0	0.75114	1	241	241		20.837	0	1				50696	7210	35320	35373	56048	56048					-0.037130538398514545
MAGALVTLRNY	11	Unmodified	_MAGALVTLRNY_					0	0	0			REV__nc|ENSG00000134851|Q9HC07-2|TMEM165	REV__nc|ENSG00000134851|Q9HC07-2|TMEM165	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5538635253906	3	403.553386	1207.63833	-0.19596	-7.9082E-05	0.55006	0.00022198	0.35409	0.00014289	403.55349037078935	29.579	1.3084	29.334	29.055	30.363	-0.24524					77	30	4	0	0	0	0.98082	1	1830	1830		41.08	3.5719	1	3168200	+		50697	23487	35321	35374	56049	56049					0.042814325540348364
MAGAVPGAIMD	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MAGAVPGAIMD_					1	0	0		nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF;ENST00000464363.5_1_20:57556337-57561303:+|nuORF;nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7-3|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	nc|ENSG00000101158|Q8IXH7|NELFCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7495727539062	2	537.751553	1073.48855	-0.90581	-0.0004871	-2.2855	-0.001229	-3.1913	-0.0017161	537.750147843429	76.272	0.94594	76.043	75.704	76.65	-0.22843					61	23	3	0	0	0	0.90489	1	9366	9366		51.335	7.2187	1	1519500			50698	15268;18130	35322	35375	56050	56050					-0.04525255780072257
MAGLMTIVTSL	11	Unmodified	_MAGLMTIVTSL_					0	0	0		ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	ENSG00000106178|ENST00000222902|CCL24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.78466796875	2	568.806328	1135.5981	-0.6808	-0.00038724	2.9447	0.0016749	2.2639	0.0012877	569.3097303825313	94.624	0.25813	94.624	94.53	94.788	0					9	5	2	0	0	0	0.023873	1	12030	12030		90.37	20.742	1	28880			50699	2766	35323	35376	56051	56051					0.03572749839236167
MAGLTSLIPV	10	Unmodified	_MAGLTSLIPV_					0	0	0			REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.290771484375	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.65054	1	10634	10634		71.296	7.0884	1	8460100	+		50700	34426	35324	35377	56052	56052					0.06244455373746405
MAGLTSLIPV	10	Unmodified	_MAGLTSLIPV_					0	0	0			REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2908935546875	2	501.288628	1000.5627	-0.38964	-0.00019532	3.5736	0.0017914	3.184	0.0015961	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.57825	1	10599	10599		79.451	2.6044	1	8504000	+		50701	34426	35324	35377	56053	56053					0.06244455373746405
MAGRHRPNARR	11	Unmodified	_MAGRHRPNARR_					0	0	0			REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7855529785156	3	441.242539	1320.70579	3.5041	0.0015461	1.5807	0.00069749	5.0848	0.0022436	441.24317383967815	18.912	0.44318	18.975	18.845	19.288	0.063307					10	8	2	0	0	0	0.024723	1	314	314		35.178	7.0967	1	14785	+		50702	35238	35325	35378	56054	56054					0.05826320328174006
MAGRHRPNARR	11	Unmodified	_MAGRHRPNARR_					0	0	0			REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	441.242539	1320.70579	0.20172	8.9006E-05	4.8819	0.0021541	5.0836	0.0022431	441.57895062735406	19.12	0.49519	18.959	18.688	19.183	-0.16079	-0.02049	0.0027769	NaN	35.178	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33073	+		50703	35238	35325	35378							0.05826320328174006
MAGRHRPNARR	11	Unmodified	_MAGRHRPNARR_					0	0	0			REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	441.242539	1320.70579	0.56701	0.00025019	4.6047	0.0020318	5.1717	0.002282	441.24467710061697	19.293	0.44719	19.093	18.908	19.355	-0.2001	0.11336	0.0024099	NaN	35.178	17	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39536	+		50704	35238	35325	35378							0.05826320328174006
MAGRHRPNARR	11	Unmodified	_MAGRHRPNARR_					0	0	0			REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	REV__ENST00000563969.5_1_16:67313489-67313678:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	441.242539	1320.70579	2.1784	0.0009612	2.3852	0.0010525	4.5636	0.0020137	441.2436128652542	19.301	0.49559	19.068	18.829	19.325	-0.23345	0.087744	-0.000528	NaN	35.178	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29242	+		50705	35238	35325	35378							0.05826320328174006
MAHEEVIYY	9	Unmodified	_MAHEEVIYY_					0	0	0		ENSG00000030304|ENST00000374448|MUSK;nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.762939453125	2	577.762975	1153.5114	0.35654	0.00020599	1.0662	0.00061601	1.4227	0.00082201	577.7643730222385	80.023	1.2036	79.777	79.278	80.482	-0.2465					76	28	4	0	0	0	0.55828	1	9598	9598		55.504	0.72789	1	606500			50706	1010	35326	35379	56055	56055					-0.05921913390989175
MAHLGWLQ	8	Unmodified	_MAHLGWLQ_					0	0	0		ENST00000383693.7_1_3:100120617-100120731:+|nuORF	ENST00000383693.7_1_3:100120617-100120731:+|nuORF	ENST00000383693.7_1_3:100120617-100120731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.97479248046875	2	478.244555	954.474557	0.11855	5.6697E-05	1.5784	0.00075488	1.697	0.00081158	478.2453477900672	43.651	1.0119	43.681	43.191	44.203	0.030827					68	27	4	0	0	0	0.027866	1	4112	4112		37.028	2.8559	1	1700100			50707	13368	35327	35380	56056	56056					-0.004501204262396641
MAHLGWLQ	8	Unmodified	_MAHLGWLQ_					0	0	0		ENST00000383693.7_1_3:100120617-100120731:+|nuORF	ENST00000383693.7_1_3:100120617-100120731:+|nuORF	ENST00000383693.7_1_3:100120617-100120731:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.244555	954.474557	-0.23334	-0.00011159	2.1761	0.0010407	1.9427	0.0009291	478.2457297579255	43.633	0.72577	43.633	43.296	44.022	0	-0.0033505	0.00016549	NaN	28.254	60	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1982100			50708	13368	35327	35380							-0.004501204262396641
MAHLMFIW	8	Unmodified	_MAHLMFIW_					0	0	0		ENST00000262554.6_1_9:94830338-94842342:-|nuORF	ENST00000262554.6_1_9:94830338-94842342:-|nuORF	ENST00000262554.6_1_9:94830338-94842342:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7589721679688	2	524.758984	1047.50341	-0.69697	-0.00036574	1.5621	0.00081974	0.86517	0.000454	524.7602757122437	57.152	0.35719	56.985	56.823	57.18	-0.1672					15	9	2	0	0	0	0.027866	1	6226	6226		33.493	17.02	1	196220			50709	11507	35328	35381	56057	56057					-0.018437191214388804
MAHVEVKH	8	Unmodified	_MAHVEVKH_					0	0	0		nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.31329345703125	2	475.747462	949.480371	2.9647	0.0014105	1.1448	0.00054463	4.1095	0.0019551	475.7478422250816	18.708	0.39244	18.708	18.48	18.873	0					14	7	3	0	0	0	0.027866	1	315	315		21.702	0	1	35708			50710	6138	35329	35382	56058	56058					0.003609780854503697
MAILQLKN	8	Unmodified	_MAILQLKN_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7776184082031	2	465.775688	929.536823	0.30012	0.00013979	3.7382	0.0017412	4.0383	0.001881	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0472	1	9748	9748		29.842	0.69198	1	1281300	+		50711	24322	35330	35383	56059	56059					0.06923605922111165
MAILQLKN	8	Unmodified	_MAILQLKN_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77789306640625	2	465.775688	929.536823	-0.52619	-0.00024508	4.4718	0.0020829	3.9456	0.0018378	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	1.0239	1	9669	9669		33.516	0.022601	1	1029300	+		50712	24322	35330	35383	56060	56060					0.06923605922111165
MAIPLLSIK	9	Unmodified	_MAIPLLSIK_					0	0	0			REV__ENST00000332782.6_1_12:57640633-57642538:-|nuORF	REV__ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.3074645996094	2	493.309364	984.604174	0.23652	0.00011668	-4.3507	-0.0021463	-4.1142	-0.0020296	493.307150560105	101.01	1.7731	101.01	100.31	102.08	0					119	40	5	0	0	0	0.62163	1	12961	12961		51.335	1.3109	1	8510800	+		50713	30495	35331	35384	56061	56061					0.11125636133067474
MAIPLLSIK	9	Unmodified	_MAIPLLSIK_					0	0	0			REV__ENST00000332782.6_1_12:57640633-57642538:-|nuORF	REV__ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3072204589844	2	493.309364	984.604174	0.20997	0.00010358	-4.3676	-0.0021546	-4.1576	-0.002051	493.30713692760764	101.07	1.5462	101.07	100.43	101.97	-0.0054474					102	36	5	0	0	0	0.34489	1	12839	12839		69.628	1.1429	1	7564200	+		50714	30495	35331	35384	56062	56062					0.11125636133067474
MAISPIPQL	9	Oxidation (M)	_M(Oxidation (M))AISPIPQL_		M(1)AISPIPQL		M(49)AISPIPQL	0	0	1			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	MSMS	OPSCC_39_ClassI_Rep-1	1	493.2730712890625	2	493.272978	984.531403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.582	1	22.582	22.082	23.082	0								0	0	0	0.52604	1	806	806		49.442	12.282	1		+		50715	28098	35332	35385	56063	56063		834			0.03851882339642998
MAKAKGLEV	9	Unmodified	_MAKAKGLEV_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7783203125	2	473.773145	945.531738	0.38238	0.00018116	4.4654	0.0021156	4.8478	0.0022967	473.7780080070681	23.205	1.9601	23.205	21.819	23.78	0					143	43	6	0	0	0	0.35646	1	894	894		68.787	0.30212	1	9113200			50716	1091	35333	35386	56064	56064					0.05679302059490965
MAKITQVDFPP	11	Unmodified	_MAKITQVDFPP_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.7095947265625	3	416.221525	1245.64274	-0.4884	-0.00020328	-2.0127	-0.00083774	-2.5011	-0.001041	416.5548186714661	27.33	1.639	27.088	26.124	27.763	-0.24217					69	39	3	0	0	0	0.024777	1	1386	1386		42.338	6.0204	1	115560			50717	1610	35334	35387	56065	56065					0.02974896976911623
MAKITQVDFPP	11	Unmodified	_MAKITQVDFPP_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	416.221525	1245.64274	-0.6176	-0.00025706	-2.2723	-0.00094578	-2.8899	-0.0012028	416.889099049211	27.306	0.71971	27.138	26.809	27.528	-0.16816	0.025134	-9.0516E-05	NaN	35.178	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102520			50718	1610	35334	35387							0.02974896976911623
MAKREDSPGP	10	Unmodified	_MAKREDSPGP_					0	0	0		nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	nc|ENSG00000110171|O75382-3|TRIM3	nc|ENSG00000110171|O75382-3|TRIM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7848510742188	2	544.263673	1086.51279	-1.6812	-0.00091504	-2.5041	-0.0013629	-4.1854	-0.002278	544.2622991149115	51.14	0.33665	51.227	51.039	51.375	0.087009					10	8	2	0	0	0	0.03519	1	5310	5310		34.173	11.13	1	52417			50719	3027	35335	35388	56066	56066					-0.027002793022120386
MAKRRLRD	8	Unmodified	_MAKRRLRD_					0	0	0			REV__DNAJB14|p.D359_S362del|1|0.12|ENSG00000164031|chr4:99901082-99901093|GCTCAAGGCATC/-|inframe_deletion	REV__DNAJB14|p.D359_S362del|1|0.12|ENSG00000164031|chr4:99901082-99901093|GCTCAAGGCATC/-|inframe_deletion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3041381835938	2	523.30601	1044.59747	-0.67906	-0.00035536	-4.3584	-0.0022808	-5.0375	-0.0026361	523.3036531837259	85.156	2.651	85.182	83.64	86.291	0.025536					197	62	4	0	0	0	1.0574	1	10555	10555		25.45	0.93098	1	2957200	+		50720	19691	35336	35389	56067	56067					0.0769513602506322
MALARKLP	8	Unmodified	_MALARKLP_					0	0	0		ENST00000528641.6_2_11:67250523-67250553:+|nuORF	ENST00000528641.6_2_11:67250523-67250553:+|nuORF	ENST00000528641.6_2_11:67250523-67250553:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26885986328125	2	450.278398	898.542243	-1.3019	-0.00058621	1.279	0.00057592	-0.022844	-1.0286E-05	450.27895902270654	38.116	0.20967	38.143	37.952	38.162	0.027275					7	5	2	0	0	0	0.027866	1	3089	3089		3.9852	0	1	1413000			50721	16186	35337	35390	56068	56068					0.08891329504581336
MALETRVSL	9	Unmodified	_MALETRVSL_					0	0	0		ENST00000298281.8_1_11:82880888-82881005:+|nuORF;PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant	ENST00000298281.8_1_11:82880888-82881005:+|nuORF	ENST00000298281.8_1_11:82880888-82881005:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2821960449219	2	510.281334	1018.54812	0.7945	0.00040542	1.8279	0.00093276	2.6224	0.0013382	510.28221132871454	97.656	0.97428	97.52	97.014	97.988	-0.1367					45	22	3	0	0	0	0.67687	1	12074	12074		47.657	1.7054	1	276110			50722	11872	35338	35391	56069	56069					0.039583832255971174
MALETRVSL	9	Unmodified	_MALETRVSL_					0	0	0		ENST00000298281.8_1_11:82880888-82881005:+|nuORF;PCF11|p.H1155Lfs*56|1|0.27|ENSG00000165494|chr11:83169799-83169799|A/-|frameshift_variant	ENST00000298281.8_1_11:82880888-82881005:+|nuORF	ENST00000298281.8_1_11:82880888-82881005:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.28228759765625	2	510.281334	1018.54812	0.92381	0.0004714	1.6245	0.00082893	2.5483	0.0013003	510.28211282943005	97.733	1.0552	97.609	96.973	98.029	-0.12368					46	24	3	0	0	0	0.5973	1	12089	12089		52.937	3.4007	1	228590			50723	11872	35338	35391	56070	56070					0.039583832255971174
MALFFSSKV	9	Oxidation (M)	_M(Oxidation (M))ALFFSSKV_		M(1)ALFFSSKV		M(58)ALFFSSKV	0	0	1		ENST00000437916.2_1_2:45148822-45149500:-|nuORF	ENST00000437916.2_1_2:45148822-45149500:-|nuORF	ENST00000437916.2_1_2:45148822-45149500:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2716674804688	2	523.272978	1044.5314	-1.3265	-0.00069411	0.37792	0.00019775	-0.94856	-0.00049636	523.2729990754835	62.796	0.91087	62.557	62.293	63.204	-0.23926					58	24	4	0	0	0	0.52323	1	7265	7265		57.811	6.4758	1	5310900			50724	14301	35339	35392	56071	56071		504			0.01091882339642325
MALGGDILLV	10	Unmodified	_MALGGDILLV_					0	0	0			REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2902526855469	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.1056	1	10268	10268		31.955	1.4512	1	10557000	+		50725	35240	35340	35393	56072	56072					0.06244455373746405
MALGHVILLL	10	Unmodified	_MALGHVILLL_					0	0	0		INTS10|p.V591L|1|0.29|ENSG00000104613|chr8:19844127-19844127|G/C|missense_variant	INTS10|p.V591L|1|0.29|ENSG00000104613|chr8:19844127-19844127|G/C|missense_variant	INTS10|p.V591L|1|0.29|ENSG00000104613|chr8:19844127-19844127|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2901000976562	2	540.335913	1078.65727	-0.88121	-0.00047615	2.9064	0.0015704	2.0252	0.0010943	540.3370814217835	66.425	0.11542	66.202	66.106	66.221	-0.22374					4	2	2	0	0	0	0.03519	1	7624	7624		26.796	0	1	168720			50726	17772	35341	35394	56073	56073					0.12109013915733158
MALLHCLLS	9	Unmodified	_MALLHCLLS_					0	0	0			REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	REV__STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3186950683594	2	500.769548	999.524544	-0.40403	-0.00020233	-0.018649	-9.3389E-06	-0.42268	-0.00021167	501.27141240137536	42.714	0.295	42.482	42.349	42.644	-0.23186					11	7	2	0	0	0	0.024517	1	3835	3835		19.36	0	1	145670	+		50727	37586	35342	35395	56074	56074					0.024762461874047403
MALLLPAATT	10	Unmodified	_MALLLPAATT_					0	0	0			REV__nc|ENSG00000134324|Q14693|LPIN1	REV__nc|ENSG00000134324|Q14693|LPIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2901611328125	2	501.288628	1000.5627	0.79978	0.00040092	2.2586	0.0011322	3.0584	0.0015331	501.2895758919925	98.248	1.3141	98.112	97.739	99.053	-0.13625					61	31	3	0	0	0	1.0142	1	12189	12189		44.117	3.3386	1	1546600	+		50728	23439	35343	35396	56075	56075					0.06244455373712299
MALLLTLLDS	10	Unmodified	_MALLLTLLDS_					0	0	0			REV__ENSG00000101188|ENST00000370501|NTSR1	REV__ENSG00000101188|ENST00000370501|NTSR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3175659179688	2	545.314843	1088.61513	-0.30292	-0.00016519	3.6289	0.0019789	3.326	0.0018137	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.1267	1	10760	10760		29.15	1.2673	1	17068000	+		50729	21194	35344	35397	56076	56076					0.07436993716692086
MALLLVLTF	9	Unmodified	_MALLLVLTF_					0	0	0			REV__ENST00000477111.2_1_22:40745965-40755045:+|nuORF	REV__ENST00000477111.2_1_22:40745965-40755045:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2811279296875	2	510.811739	1019.60893	-0.041112	-2.1001E-05	4.2415	0.0021666	4.2004	0.0021456	510.8132359119983	61.139	0.37788	61.139	60.996	61.374	0					15	9	2	0	0	0	0.024412	1	7095	7095		50.025	29.543	1	192710	+		50730	33323	35345	35398	56077	56077					0.09990520275812287
MALLLVLTF	9	Unmodified	_MALLLVLTF_					0	0	0			REV__ENST00000477111.2_1_22:40745965-40755045:+|nuORF	REV__ENST00000477111.2_1_22:40745965-40755045:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.28106689453125	2	510.811739	1019.60893	-0.094355	-4.8198E-05	4.2216	0.0021564	4.1272	0.0021082	510.81340673113647	61.142	0.48416	61.214	60.91	61.394	0.071125					16	12	2	0	0	0	0.024	1	7001	7001		65.803	30.602	1	206410	+		50731	33323	35345	35398	56078	56078					0.09990520275812287
MALPAPPLP	9	Unmodified	_MALPAPPLP_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.2639465332031	2	453.759507	905.50446	0.57802	0.00026228	2.9974	0.0013601	3.5754	0.0016224	453.7606849339413	21.661	0.5725	21.484	21.303	21.875	-0.17721					23	11	3	0	0	0	0.024389	1	689	689		29.842	0	1	168490	+		50732	24166	35346	35399	56079	56079					0.047928185191153716
MALPEEAKI	9	Unmodified	_MALPEEAKI_					0	0	0		ENSG00000125447|ENST00000537686|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;nc|ENSG00000125447|Q9NZ52-3|GGA3	ENSG00000125447|ENST00000537686|GGA3	ENSG00000125447|ENST00000537686|GGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7460021972656	2	501.270435	1000.52632	-0.37314	-0.00018704	2.1956	0.0011006	1.8225	0.00091355	501.27138984070655	41.614	0.23772	41.386	41.236	41.474	-0.2278					8	5	2	0	0	0	0.024506	1	3660	3660		23.042	3.939	1	98780			50733	4105	35347	35400	56080	56080					0.026075784770114296
MALPIIVK	8	Unmodified	_MALPIIVK_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2591857910156	2	442.785524	883.556496	-0.91467	-0.000405	-3.7626	-0.001666	-4.6773	-0.002071	442.7821162010842	27.148	0.2887	27.229	27.031	27.319	0.081293					13	7	3	0	0	0	0.027866	1	1396	1396		37.028	0	1	162310			50734	7264	35348	35401	56081	56081					0.11005981932873965
MALPIIVK	8	Unmodified	_MALPIIVK_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.785524	883.556496	-0.52093	-0.00023066	-6.1566	-0.0027261	-6.6776	-0.0029567	442.7818045440759	27.196	0.97994	26.954	26.529	27.509	-0.24217	-0.093374	-0.00059991	NaN	37.028	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247520			50735	7264	35348	35401							0.11005981932873965
MALPIIVK	8	Unmodified	_MALPIIVK_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.785524	883.556496	-0.52743	-0.00023354	-5.6601	-0.0025062	-6.1876	-0.0027398	442.7816882825875	27.08	0.88967	26.912	26.68	27.57	-0.16816	-0.13531	-0.00016021	NaN	37.028	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285960			50736	7264	35348	35401							0.11005981932873965
MALPIIVK	8	Unmodified	_MALPIIVK_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.785524	883.556496	0.018394	8.1445E-06	-8.783	-0.003889	-8.7646	-0.0038808	442.7814985732316	27.251	0.7943	27.094	26.93	27.724	-0.15664	0.046982	-0.0029258	NaN	37.028	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218880			50737	7264	35348	35401							0.11005981932873965
MALPSISLGYS	11	Unmodified	_MALPSISLGYS_					0	0	0			REV__ENST00000337540.11_1_10:99520017-99520263:+|nuORF	REV__ENST00000337540.11_1_10:99520017-99520263:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2678833007812	2	569.794275	1137.574	0.47506	0.00027068	-0.31227	-0.00017793	0.16279	9.2757E-05	570.2954120701738	19.193	0.69257	19.032	18.738	19.43	-0.1608					16	13	2	0	0	0	0.024738	1	367	367		26.693	0	1	32644	+		50738	30565	35349	35402	56082	56082					0.010712326772136294
MALPVTALLLP	11	Unmodified	_MALPVTALLLP_					0	0	0		nc|ENSG00000153563|P01732-2|CD8A;ENSG00000153563|ENST00000283635|CD8A;nc|ENSG00000153563|P01732-3|CD8A	nc|ENSG00000153563|P01732-2|CD8A	nc|ENSG00000153563|P01732-2|CD8A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2678833007812	2	569.848853	1137.68315	0.65724	0.00037453	2.7117	0.0015453	3.369	0.0019198	569.8502767285396	18.874	0.29617	18.717	18.544	18.84	-0.15637					7	5	2	0	0	0	0.024743	1	367	367		20.947	0	1	13449			50739	6351	35350	35403	56083	56083					0.11981863367350343
MALRKRAQ	8	Unmodified	_MALRKRAQ_					0	0	0		nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2	nc|ENSG00000158467|Q96HN2-4|AHCYL2	nc|ENSG00000158467|Q96HN2-4|AHCYL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.26910400390625	2	487.289828	972.565103	-0.81826	-0.00039873	-4.0579	-0.0019774	-4.8762	-0.0023761	487.2877470697478	53.329	0.6552	53.182	52.91	53.566	-0.14723					44	17	4	0	0	0	0.027866	1	5798	5798		35.201	8.4046	1	1528500			50740	6672	35351	35404	56084	56084					0.07772348622063419
MALSFSIKNI	10	Unmodified	_MALSFSIKNI_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3116455078125	2	562.312635	1122.61072	0.044339	2.4932E-05	-3.0547	-0.0017177	-3.0104	-0.0016928	562.3107990391446	87.524	1.615	87.524	87.152	88.767	0					122	38	4	0	0	0	0.52765	1	11068	11068		85.161	0.2453	1	2858300	+		50741	36819	35352	35405	56085	56085					0.05431529293787207
MALSQYTY	8	Unmodified	_MALSQYTY_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.72723388671875	2	488.725861	975.437169	0.33628	0.00016435	2.8233	0.0013798	3.1595	0.0015441	488.7272647108041	80.227	0.71214	80.02	79.714	80.426	-0.20633					28	16	2	0	0	0	0.95679	1	9612	9612		44.117	1.7207	1	347070			50742	3446	35353	35406	56086	56086					-0.05153256482503821
MALSSTVRSV	10	Unmodified	_MALSSTVRSV_					0	0	0			REV__ENSG00000170385|ENST00000367001|SLC30A1	REV__ENSG00000170385|ENST00000367001|SLC30A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7825317382812	2	525.784241	1049.55393	0.4643	0.00024412	-4.1165	-0.0021644	-3.6522	-0.0019203	525.7820983599777	49.833	1.0497	49.652	49.268	50.317	-0.18071					80	27	6	0	0	0	0.96822	1	5038	5038		49.536	1.8787	1	14979000	+		50743	26465	35354	35407	56087	56087					0.03113481737273105
MALTVVPSF	9	Unmodified	_MALTVVPSF_					0	0	0		nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-2|BBS4	MSMS	OPSCC_40_ClassI_Rep-3	6	482.7622375488281	2	482.762246	963.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.765	1	87.628	87.128	88.128	-0.13734								0	0	0	0.56622	1	10670	10670		44.117	3.5442	1				50744	18336	35355	35408	56088	56088					0.02672497310925337
MALVQRLGPLP	11	Unmodified	_MALVQRLGPLP_					0	0	0		ENST00000315183.11_2_16:24741057-24741108:+|nuORF	ENST00000315183.11_2_16:24741057-24741108:+|nuORF	ENST00000315183.11_2_16:24741057-24741108:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8565673828125	2	597.855001	1193.69545	-1.1131	-0.00066547	3.9491	0.002361	2.836	0.0016955	598.3593015087366	90.895	2.4279	90.77	89.373	91.801	-0.12512					145	57	3	0	0	0	0.9749	1	11269	11269		42.396	2.338	1	2839900			50745	12130	35356	35409	56089	56089					0.10634899830392897
MALVQRLGPLP	11	Unmodified	_MALVQRLGPLP_					0	0	0		ENST00000315183.11_2_16:24741057-24741108:+|nuORF	ENST00000315183.11_2_16:24741057-24741108:+|nuORF	ENST00000315183.11_2_16:24741057-24741108:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8563842773438	2	597.855001	1193.69545	-0.21005	-0.00012558	2.0545	0.0012283	1.8444	0.0011027	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	0.90489	1	11490	11490		51.335	5.3632	1	5598500			50746	12130	35356	35409	56090	56090					0.10634899830392897
MAMEKMKKGS	10	Unmodified	_MAMEKMKKGS_					0	0	0			REV__ENST00000396408.7_1_19:53911016-53911145:+|nuORF	REV__ENST00000396408.7_1_19:53911016-53911145:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.782470703125	2	570.78233	1139.55011	-0.34342	-0.00019602	-0.18498	-0.00010558	-0.52839	-0.0003016	570.7821853658869	90.817	1.5114	90.828	90.449	91.961	0.011276					110	35	5	0	0	0	0.57594	2	11422	11422;11435		79.713	2.395	1	5052300	+		50747	31732	35357	35410	56091;56092	56091					-0.014086473524457688
MAMVRAGLL	9	2 Oxidation (M)	_M(Oxidation (M))AM(Oxidation (M))VRAGLL_		M(1)AM(1)VRAGLL		M(80)AM(80)VRAGLL	0	0	2		ENST00000448927.1_1_21:45752592-45753258:+|nuORF	ENST00000448927.1_1_21:45752592-45753258:+|nuORF	ENST00000448927.1_1_21:45752592-45753258:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.26239013671875	2	497.26463	992.514707	-0.60669	-0.00030169	-3.0503	-0.0015168	-3.657	-0.0018185	497.2629896396473	48.345	6.1114	48.248	45.849	51.96	-0.097553					376	164	4	0	0	0	0.26797	1	4898	4898		79.939	8.6435	1	6694800			50748	14490	35358	35411	56093	56093		507;508			0.018150581820577827
MANQEANTMS	10	Unmodified	_MANQEANTMS_					0	0	0		ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	ENSG00000198932|ENST00000537097|GPRASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3348388671875	2	548.723523	1095.43249	-1.7028	-0.00093434	1.2217	0.0006704	-0.48101	-0.00026394	548.7241280536998	29.592	0.76364	29.592	29.333	30.096	0					30	18	2	0	0	0	0.03519	1	1832	1832		26.693	0	1	209360			50749	10255	35359	35412	56094	56094					-0.11140508687572037
MANSYGHSLP	10	Unmodified	_MANSYGHSLP_					0	0	0		nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5	nc|ENSG00000103534|Q6UXY8-2|TMC5	nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2816772460938	2	538.745116	1075.47568	-1.2385	-0.00066725	-2.2828	-0.0012298	-3.5213	-0.0018971	539.2462520706387	52.45	0.33666	52.181	52.018	52.354	-0.26903					10	8	2	0	0	0	0.03519	1	5443	5443		37.812	2.1932	1	58416			50750	2514	35360	35413	56095	56095					-0.05903950847982742
MANWIIID	8	Unmodified	_MANWIIID_					0	0	0		nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7911682128906	2	488.252046	974.489538	-0.29456	-0.00014382	4.0996	0.0020016	3.805	0.0018578	488.2539391541827	82.499	0.9411	82.499	82.154	83.095	0					47	21	3	0	0	0	0.027866	1	10311	10311		38.806	0	1	1123100			50751	18838	35361	35414	56096	56096					0.0012732665111343522
MAPARLFAL	9	Unmodified	_MAPARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2838134765625	2	495.28368	988.552807	-1.0204	-0.00050538	1.6907	0.00083737	0.6703	0.00033199	495.2842871052104	69.245	0.91785	68.983	68.666	69.584	-0.26166					44	21	3	0	0	0	0.62163	1	8033	8033		51.335	1.3109	1	2031100			50752	4014	35362	35415	56097	56097					0.05807312159004141
MAPARLFAL	9	Unmodified	_MAPARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2836608886719	2	495.28368	988.552807	0.28046	0.00013891	-1.9292	-0.00095548	-1.6487	-0.00081657	495.28352368310965	69.115	0.8963	68.872	68.47	69.366	-0.24277					63	21	5	0	0	0	0.62163	1	8033	8033		51.335	1.3109	1	2109900			50753	4014	35362	35415	56098	56098					0.05807312159004141
MAPARLFAL	9	Unmodified	_MAPARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.28265380859375	2	495.28368	988.552807	-0.22247	-0.00011019	0.43584	0.00021587	0.21337	0.00010568	495.28371534378294	69.097	0.70424	68.867	68.677	69.382	-0.23048					37	16	3	0	0	0	0.62163	1	7999	7999		51.335	4.569	1	1966000			50754	4014	35362	35415	56099	56099					0.05807312159004141
MAPISFYSLS	10	Unmodified	_MAPISFYSLS_					0	0	0		TSHR|p.A644S|1|0.37|ENSG00000165409|chr14:81143988-81143988|G/T|missense_variant	TSHR|p.A644S|1|0.37|ENSG00000165409|chr14:81143988-81143988|G/T|missense_variant	TSHR|p.A644S|1|0.37|ENSG00000165409|chr14:81143988-81143988|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3455200195312	2	558.275718	1114.53688	-0.39474	-0.00022037	2.3504	0.0013122	1.9557	0.0010918	558.2769670926749	67.538	1.4333	67.25	66.623	68.057	-0.28835					54	35	2	0	0	0	0.03519	1	8025	8025		71.296	13.049	1	410010			50755	38113	35363	35416	56100	56100					-0.01580438868541023
MAPPLLPAM	9	Unmodified	_MAPPLLPAM_					0	0	0			REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF	REV__ENST00000361937.7_1_15:41388526-41408484:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.75494384765625	2	470.753367	939.492181	0.32786	0.00015434	3.397	0.0015991	3.7249	0.0017535	470.7549706964286	37.47	1.0412	37.47	37.158	38.199	0					88	29	5	0	0	0	0.80342	1	3092	3092		39.021	0.21535	1	12806000	+		50756	30958	35364	35417	56101	56101					0.02001458784411625
MAQCFSEDN	9	Unmodified	_MAQCFSEDN_					0	0	0		ENST00000447898.1_22:16151740-16151803:-|nuORF	ENST00000447898.1_22:16151740-16151803:-|nuORF	ENST00000447898.1_22:16151740-16151803:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7481079101562	2	522.691692	1043.36883	-0.2858	-0.00014939	-1.0326	-0.00053973	-1.3184	-0.00068912	522.6909018280279	36.949	0.31803	36.729	36.488	36.807	-0.2195					9	7	2	0	0	0	0.024292	1	2928	2928		25.574	0	1	44750			50757	14476	35365	35418	56102	56102					-0.15111869124666555
MAQLREVLE	9	Unmodified	_MAQLREVLE_					0	0	0			REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7901000976562	2	544.792066	1087.56958	0.2611	0.00014224	-3.7813	-0.00206	-3.5202	-0.0019178	544.7898935213664	59.088	1.5345	59.088	58.531	60.066	0					108	41	5	0	0	0	0.32811	1	6741	6741		71.877	8.3436	1	9057000	+		50758	26430	35366	35419	56103	56103					0.02929768254307419
MAQLREVLE	9	Unmodified	_MAQLREVLE_					0	0	0			REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7901611328125	2	544.792066	1087.56958	0.84588	0.00046083	-4.3988	-0.0023964	-3.5529	-0.0019356	544.789612384074	59.308	1.4213	59.111	58.675	60.096	-0.19651					97	38	4	0	0	0	0.12602	1	6731	6731		104.75	11.603	1	8781100	+		50759	26430	35366	35419	56104	56104					0.02929768254307419
MAQLREVLE	9	Unmodified	_MAQLREVLE_					0	0	0			REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	REV__ENST00000576723.5_1_17:7843028-7852016:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7901611328125	2	544.792066	1087.56958	-0.3967	-0.00021612	-3.1882	-0.0017369	-3.5849	-0.001953	544.7902510259166	58.949	1.5767	59.035	58.404	59.98	0.085682					111	42	5	0	0	0	0.19099	3	6652	6628;6652;6666		90.37	5.4543	1	8113600	+		50760	26430	35366	35419	56105;56106;56107	56106					0.02929768254307419
MAQLRFKK	8	Unmodified	_MAQLRFKK_					0	0	0		nc|ENSG00000087995|Q96IZ6-2|METTL2A;nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7829895019531	2	511.302404	1020.59026	-0.88938	-0.00045474	-4.0631	-0.0020775	-4.9525	-0.0025322	511.3001756354328	53.508	0.43323	53.361	53.132	53.566	-0.14724					29	11	3	0	0	0	0.027866	1	5735	5735		26.796	0	1	539030			50761	1858	35367	35420	56108	56108					0.08078403424622138
MARHLHAIL	9	Unmodified	_MARHLHAIL_					0	0	0		ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38051140-38051556:-|nuORF	ENSG00000187091|ENST00000334661|PLCD1	ENSG00000187091|ENST00000334661|PLCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	531.305478	1060.5964	-0.90343	-0.00048	-3.6984	-0.001965	-4.6018	-0.002445	531.3033763549739	85.412	0.53999	85.438	85.119	85.659	0.025528					27	12	3	0	0	0	0.024436	1	10615	10615		38.806	5.2906	1	328680			50762	9606	35368	35421	56109	56109					0.06852921656150102
MARIYRSW	8	Unmodified	_MARIYRSW_					0	0	0		ENST00000418040.5_1_7:134331590-134346220:+|nuORF	ENST00000418040.5_1_7:134331590-134346220:+|nuORF	ENST00000418040.5_1_7:134331590-134346220:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.8005981445312	2	541.781836	1081.54912	-0.43922	-0.00023796	4.3562	0.0023601	3.9169	0.0021221	541.7833101002647	17.746	0.2002	17.539	17.464	17.664	-0.20669					6	3	2	0	0	0	0.027866	1	210	210		25.45	1.9275	1	13553			50763	13927	35369	35422	56110	56110					0.011606423851617365
MARLAREGGT	10	Unmodified	_MARLAREGGT_					0	0	0		ENSG00000178467|ENST00000383729|P4HTM;nc|ENSG00000178467|Q9NXG6-3|P4HTM;ENST00000484115.5_1_3:49043466-49044337:+|nuORF;ENST00000472301.5_1_3:49043105-49044337:+|nuORF	ENSG00000178467|ENST00000383729|P4HTM;ENST00000472301.5_1_3:49043105-49044337:+|nuORF	ENST00000472301.5_1_3:49043105-49044337:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2884521484375	2	531.279657	1060.54476	-0.79562	-0.0004227	1.2158	0.00064591	0.42014	0.00022321	531.2807810141646	45.615	0.26986	45.615	45.478	45.748	0					11	7	2	0	0	0	0.03519	1	4460	4460		44.377	5.1244	1	193300			50764	8815;14987	35370	35423	56111	56111					0.01691133171607362
MARLDKRR	8	Unmodified	_MARLDKRR_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3038330078125	2	523.30601	1044.59747	-1.1808	-0.0006179	-3.0126	-0.0015765	-4.1934	-0.0021944	523.3043344110223	90.238	1.0253	90.083	89.781	90.806	-0.1552					44	24	2	0	0	0	0.95679	1	11038	11038		44.117	1.6423	1	1555500			50765	8503	35371	35424	56112	56112					0.07695136025040483
MARLLPVQ	8	Unmodified	_MARLLPVQ_					0	0	0		ENST00000522070.1_1_8:91075288-91075656:-|nuORF;nc|ENSG00000104327|P05937-2|CALB1;ENSG00000104327|ENST00000265431|CALB1	ENST00000522070.1_1_8:91075288-91075656:-|nuORF	ENST00000522070.1_1_8:91075288-91075656:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7640380859375	2	464.275855	926.537157	-1.4311	-0.00066444	1.003	0.00046565	-0.42816	-0.00019879	464.27616944534833	21.451	0.77759	21.238	21.02	21.798	-0.2128					35	15	4	0	0	0	0.027866	1	685	685		13.775	0	1	174960			50766	2561	35372	35425	56113	56113					0.07095025641967823
MARPVSDRTPA	11	Unmodified	_MARPVSDRTPA_					0	0	0		ENSG00000105516|ENST00000222122|DBP;ENST00000594723.1_1_19:49138672-49140251:-|nuORF	ENSG00000105516|ENST00000222122|DBP	ENSG00000105516|ENST00000222122|DBP	MSMS	OPSCC_40_ClassI_Rep-2	5	400.8757019042969	3	400.87664	1199.60809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.584	1	37.365	36.865	37.865	-0.2195								0	0	0	1.087	1	3025	3025		37.508	1.0614	1				50767	2687	35373	35426	56114	56114					0.016270738888351843
MARQPWEPP	9	Unmodified	_MARQPWEPP_					0	0	0		ENST00000464428.2_1_1:177936859-177991802:-|nuORF	ENST00000464428.2_1_1:177936859-177991802:-|nuORF	ENST00000464428.2_1_1:177936859-177991802:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.263427734375	2	556.271301	1110.52805	-0.84365	-0.0004693	-2.9049	-0.0016159	-3.7485	-0.0020852	556.269214292381	44.904	0.61769	44.693	44.292	44.91	-0.21109					26	15	2	0	0	0	0.024457	1	4185	4185		45.952	14.422	1	470160			50768	14764	35374	35427	56115	56115					-0.022793677143681634
MARQPWEPP	9	Unmodified	_MARQPWEPP_					0	0	0		ENST00000464428.2_1_1:177936859-177991802:-|nuORF	ENST00000464428.2_1_1:177936859-177991802:-|nuORF	ENST00000464428.2_1_1:177936859-177991802:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.271301	1110.52805	-0.34682	-0.00019293	-6.8564	-0.003814	-7.2032	-0.004007	556.7681515088826	44.982	0.92558	44.982	44.622	45.548	0	0.22817	-0.0030628	NaN	45.952	35	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414810			50769	14764	35374	35427							-0.022793677143681634
MARWIPTKRQ	10	Unmodified	_MARWIPTKRQ_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000147459|Q9H7D0-2|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.2640380859375	3	429.576525	1285.70774	-0.085262	-3.6627E-05	4.43	0.001903	4.3447	0.0018664	429.57858176013997	41.872	0.43409	41.64	41.469	41.904	-0.23186					16	11	2	0	0	0	0.03519	1	3731	3731		32.751	11.913	1	92485			50770	5969	35375	35428	56116	56116					0.07631936293432773
MASKILLNV	9	Unmodified	_MASKILLNV_					0	0	0		ENSG00000258659|ENST00000429814|TRIM34;nc|ENSG00000258659|Q9BYJ4-2|TRIM34;ENST00000491385.1_1_11:5653561-5662456:+|nuORF	ENSG00000258659|ENST00000429814|TRIM34	ENSG00000258659|ENST00000429814|TRIM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7950134277344	2	494.79662	987.578688	0.42653	0.00021104	-2.8064	-0.0013886	-2.3799	-0.0011776	494.79532947070106	95.829	0.59696	95.835	95.265	95.862	0.0065002					38	13	4	0	0	0	0.16468	1	12166	12166		96.19	19.416	1	2887800			50771	10929	35376	35429	56117	56117					0.08440161610644736
MASKVSCLYVL	11	Unmodified	_MASKVSCLYVL_					0	0	0		ENSG00000172318|ENST00000392690|B3GALT1	ENSG00000172318|ENST00000392690|B3GALT1	ENSG00000172318|ENST00000392690|B3GALT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.23529052734375	3	405.215494	1212.62465	-0.27374	-0.00011092	-2.7266	-0.0011049	-3.0003	-0.0012158	405.21439384218024	23.868	0.47286	23.821	23.571	24.044	-0.047146					19	10	3	0	0	0	0.024723	1	957	957		26.063	2.5407	1	63683			50772	8262	35377	35430	56118	56118					0.02684438730580041
MASQALRLD	9	Unmodified	_MASQALRLD_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78277587890625	2	502.763309	1003.51206	-0.46784	-0.00023521	-0.47679	-0.00023971	-0.94462	-0.00047492	502.7634870255029	45.183	0.13469	45.183	45.079	45.214	0					5	3	2	0	0	0	0.024025	1	4371	4371		62.107	17.991	1	45112			50773	4858	35378	35431	56119	56119					0.010449260487234824
MASVLRSLD	9	Unmodified	_MASVLRSLD_					0	0	0		ENST00000582218.1_1_1:247803672-247826805:+|nuORF	ENST00000582218.1_1_1:247803672-247826805:+|nuORF	ENST00000582218.1_1_1:247803672-247826805:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2973937988281	2	496.265684	990.516816	0.84999	0.00042182	-0.89055	-0.00044195	-0.040558	-2.0127E-05	496.2654429122109	54.231	0.30816	54.329	54.15	54.458	0.098015					11	8	2	0	0	0	0.023635	1	5854	5854		66.429	0.6261	1	79939			50774	17175	35379	35432	56120	56120					0.021178101914983927
MATCQPARSD	10	Unmodified	_MATCQPARSD_					0	0	0		ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.233642578125	2	540.234058	1078.45356	-0.69106	-0.00037333	0.10853	5.8634E-05	-0.58253	-0.0003147	540.2341320885131	26.724	1.482	26.724	26.283	27.765	0					110	37	4	0	0	0	0.80817	1	1398	1398		60.118	4.6141	1	5851700			50775	8595	35380	35433	56121	56121					-0.0825249858803545
MATCQPARSD	10	Unmodified	_MATCQPARSD_					0	0	0		ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2340087890625	2	540.234058	1078.45356	-1.0465	-0.00056534	0.36712	0.00019833	-0.67935	-0.00036701	540.2342793222425	26.308	1.3828	26.389	26.01	27.392	0.081293					113	34	5	0	0	0	0.66532	1	1307	1307		69.628	9.3337	1	5038300			50776	8595	35380	35433	56122	56122					-0.0825249858803545
MATEHPEPP	9	Unmodified	_MATEHPEPP_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3109130859375	2	504.726392	1007.43823	-0.45714	-0.00023073	-3.4647	-0.0017487	-3.9218	-0.0019795	504.72443634092366	35.118	3.4792	35.162	32.865	36.344	0.04406					199	91	3	0	0	0	0.024294	1	2660	2660		37.159	0	1	1488700			50777	1848	35381	35434	56123	56123					-0.06519042113598061
MATLKIRN	8	Unmodified	_MATLKIRN_					0	0	0		ENST00000547136.1_1_12:48359585-48360048:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C	ENST00000547136.1_1_12:48359585-48360048:+|nuORF	ENST00000547136.1_1_12:48359585-48360048:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	473.778076171875	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.3	1	24.253	23.753	24.753	-0.047148								0	0	0	0.5271	1	1033	1033		53.351	2.016	1				50778	4777	35382	35435	56124	56124					0.06802124153637124
MATLVREGE	9	Unmodified	_MATLVREGE_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.253173828125	2	503.255317	1004.49608	-0.2116	-0.00010649	-3.5691	-0.0017962	-3.7807	-0.0019027	503.25356080541667	44.611	1.611	44.648	44.34	45.951	0.0369					114	46	4	0	0	0	0.48817	1	4219	4219		60.118	7.1816	1	4908000	+		50779	24617	35383	35436	56125	56125					-0.005987801881701671
MATVRHRPEA	10	Unmodified	_MATVRHRPEA_					0	0	0		ENSG00000185774|ENST00000382152|KCNIP4;nc|ENSG00000185774|Q6PIL6-3|KCNIP4;nc|ENSG00000185774|Q6PIL6-2|KCNIP4;nc|ENSG00000185774|Q6PIL6-5|KCNIP4;nc|ENSG00000185774|Q6PIL6-4|KCNIP4	ENSG00000185774|ENST00000382152|KCNIP4	ENSG00000185774|ENST00000382152|KCNIP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.2652587890625	2	584.306207	1166.59786	-0.34022	-0.00019879	-3.8098	-0.0022261	-4.15	-0.0024249	584.3059517942594	72.869	1.0972	72.592	71.745	72.842	-0.2769					34	25	2	0	0	0	0.03519	1	8577	8577		19.997	9.1312	1	79229			50780	9473	35384	35437	56126	56126					0.02122510954268364
MATVRHRPEA	10	Unmodified	_MATVRHRPEA_					0	0	0		ENSG00000185774|ENST00000382152|KCNIP4;nc|ENSG00000185774|Q6PIL6-3|KCNIP4;nc|ENSG00000185774|Q6PIL6-2|KCNIP4;nc|ENSG00000185774|Q6PIL6-5|KCNIP4;nc|ENSG00000185774|Q6PIL6-4|KCNIP4	ENSG00000185774|ENST00000382152|KCNIP4	ENSG00000185774|ENST00000382152|KCNIP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	584.306207	1166.59786	-1.0183	-0.00059502	-5.4173	-0.0031653	-6.4356	-0.0037604	584.8037471489237	72.621	0.54767	72.423	72.12	72.667	-0.19811	-0.084539	-0.00070438	NaN	19.997	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124440			50781	9473	35384	35437							0.02122510954268364
MAVFILKVPLF	11	Unmodified	_MAVFILKVPLF_					0	0	0			REV__ENSG00000072954|ENST00000187762|TMEM38A	REV__ENSG00000072954|ENST00000187762|TMEM38A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7748718261719	3	426.594522	1276.76174	0.24874	0.00010611	-0.3855	-0.00016445	-0.13676	-5.834E-05	426.92863473297945	41.888	0.28347	41.911	41.706	41.99	0.023396					12	7	2	0	0	0	0.024821	1	3758	3758		25.126	6.5949	1	49915	+		50782	20488	35385	35438	56127	56127					0.13442715672431405
MAVLWSRK	8	Unmodified	_MAVLWSRK_					0	0	0		SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|40|3|sense	SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|40|3|sense	SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|40|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7835998535156	2	495.781305	989.548056	0.17533	8.6923E-05	-1.8628	-0.00092354	-1.6875	-0.00083662	495.7801236667535	90.497	2.8053	90.359	89.488	92.293	-0.13824					136	66	4	0	0	0	0.71833	1	11038	11038		65.803	7.9919	1	1209800			50783	38017	35386	35439	56128	56128					0.0528642801625665
MAVSRKDW	8	Unmodified	_MAVSRKDW_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2691650390625	2	496.752744	991.490935	-0.1598	-7.9381E-05	2.7652	0.0013736	2.6054	0.0012943	496.7536609792962	53.06	0.13819	53.156	53.092	53.23	0.095669					5	3	2	0	0	0	0.027866	1	5653	5653		19.36	0	1	55850			50784	6724	35387	35440	56129	56129					-0.00515039260130834
MAVYKMADV	9	Oxidation (M)	_MAVYKM(Oxidation (M))ADV_		MAVYKM(1)ADV		M(-74)AVYKM(74)ADV	0	0	1		ENST00000545747.1_1_12:1754224-1755415:+|nuORF	ENST00000545747.1_1_12:1754224-1755415:+|nuORF	ENST00000545747.1_1_12:1754224-1755415:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.246826171875	2	522.248646	1042.48274	-1.3002	-0.00067903	-1.5693	-0.00081956	-2.8695	-0.0014986	522.2476737687759	83.559	0.72956	83.559	83.18	83.91	0					40	16	3	0	0	0	0.19099	1	10451	10451		90.37	20.742	2	969770			50785	16494	35388	35441	56130	56130		536			-0.036803542917823506
MAVYKMADV	9	Oxidation (M)	_MAVYKM(Oxidation (M))ADV_		MAVYKM(1)ADV		M(-62)AVYKM(62)ADV	0	0	1		ENST00000545747.1_1_12:1754224-1755415:+|nuORF	ENST00000545747.1_1_12:1754224-1755415:+|nuORF	ENST00000545747.1_1_12:1754224-1755415:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.2474365234375	2	522.248646	1042.48274	-0.43363	-0.00022646	-2.5287	-0.0013206	-2.9623	-0.0015471	522.2471494770315	83.58	1.2455	83.489	83	84.246	-0.090454					55	28	3	0	0	0	0.22902	1	10422	10422		85.161	6.897	2	1060500			50786	16494	35388	35441	56131	56131		536			-0.036803542917823506
MAWWLIAF	8	Unmodified	_MAWWLIAF_					0	0	0		nc|ENSG00000187486|Q14654-2|KCNJ11;ENSG00000187486|ENST00000339994|KCNJ11	nc|ENSG00000187486|Q14654-2|KCNJ11	nc|ENSG00000187486|Q14654-2|KCNJ11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.232177734375	2	519.267499	1036.52044	-0.8496	-0.00044117	0.67417	0.00035007	-0.17544	-9.1098E-05	519.266891082125	45.213	0.461	45.113	44.828	45.289	-0.099449					25	12	3	0	0	0	0.027866	1	4296	4296		16.705	0	1	321440			50787	9627	35389	35442	56132	56132					0.0036452475599162426
MAYFVENF	8	Unmodified	_MAYFVENF_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.3155822753906	2	510.728403	1019.44225	-0.52254	-0.00026688	-2.8611	-0.0014612	-3.3836	-0.0017281	510.7269506721091	40.271	0.2205	40.121	39.933	40.153	-0.1497					7	5	2	0	0	0	0.027866	1	3475	3475		14.664	0	1	74831			50788	6576	35390	35443	56133	56133					-0.06668952619884294
MAYFVENF	8	Unmodified	_MAYFVENF_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.728403	1019.44225	-0.24837	-0.00012685	-3.1759	-0.001622	-3.4242	-0.0017489	511.2283569454402	40.245	0.26844	40.133	39.904	40.172	-0.11223	0.0057786	-9.397E-05	NaN	8.8223	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46551			50789	6576	35390	35443							-0.06668952619884294
MAYKLHVKP	9	Unmodified	_MAYKLHVKP_					0	0	0			REV__IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	REV__IFT172|p.E1143K|1|0.21|ENSG00000138002|chr2:27454605-27454605|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3314819335938	2	543.810062	1085.60557	-1.2958	-0.00070466	2.5361	0.0013792	1.2403	0.00067451	543.8115890501499	44.683	0.96631	44.683	44.247	45.214	0					76	27	4	0	0	0	0.024436	1	4277	4277		30.504	0	1	2183800	+		50790	36146	35391	35444	56134	56134					0.06619270221813167
MAYSCAREAD	10	Unmodified	_MAYSCAREAD_					0	0	0			REV__SRP68|p.W135C|1|0.11|ENSG00000167881|chr17:76064132-76064132|C/G|missense_variant	REV__SRP68|p.W135C|1|0.11|ENSG00000167881|chr17:76064132-76064132|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.2984008789062	2	558.726066	1115.43758	-0.46004	-0.00025704	3.7868	0.0021158	3.3268	0.0018588	558.7280738067344	75.326	0.43076	75.081	74.798	75.229	-0.24455					18	10	2	0	0	0	0.03519	1	9169	9169		45.972	3.5761	1	183190	+		50791	37580	35392	35445	56135	56135					-0.11552204824965884
MAYSTFTY	8	Oxidation (M)	_M(Oxidation (M))AYSTFTY_		M(1)AYSTFTY		M(55)AYSTFTY	0	0	1			REV__nc|ENSG00000282122|A0A0J9YVY3|IGHV7-4-1	REV__nc|ENSG00000282122|A0A0J9YVY3|IGHV7-4-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.2081604003906	2	500.210043	998.405534	-1.2057	-0.00060311	-3.3569	-0.0016792	-4.5626	-0.0022823	500.20824753099777	43.734	4.0529	43.515	42.266	46.319	-0.21939					293	110	4	0	0	0	0.85409	1	3923	3923		54.765	12.369	1	9875900	+		50792	37120	35393	35446	56136	56136		977			-0.09373249236443826
MCFILIFWY	9	Unmodified	_MCFILIFWY_					0	0	0		ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENST00000462386.5_1_2:209112975-209118617:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.9001159667969	3	412.537908	1234.5919	-0.51863	-0.00021395	3.8749	0.0015985	3.3562	0.0013846	412.53946739197534	28.566	0.34137	28.397	28.213	28.554	-0.16897					16	7	3	0	0	0	0.024523	1	1686	1686		37.159	3.2375	1	127080			50793	14706	35394	35447	56137	56137					-0.016017236016068637
MCIKYFNL	8	Unmodified	_MCIKYFNL_					0	0	0			REV__ENST00000484162.5_1_1:70697315-70697588:+|nuORF	REV__ENST00000484162.5_1_1:70697315-70697588:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3098754882812	2	516.256274	1030.49799	1.482	0.00076508	1.0433	0.00053863	2.5253	0.0013037	516.2568057586346	59.091	0.90157	58.904	58.611	59.513	-0.18705					29	24	2	0	0	0	0.027866	1	6770	6770		18.324	1.8513	1	245380	+		50794	33531	35395	35448	56138	56138					-0.016034427039130605
MCKKRVVIV	9	Unmodified	_MCKKRVVIV_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3272094726562	2	538.327565	1074.64058	0.18374	9.8912E-05	-0.55356	-0.000298	-0.36982	-0.00019908	538.3274057941413	101.12	0.9513	100.99	100.68	101.63	-0.13156					46	21	3	0	0	0	0.83071	1	12513	12513		37.159	0	1	133690	+		50795	23467	35396	35449	56139	56139					0.10624189758118519
MCLLKQVK	8	Unmodified	_MCLLKQVK_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7845764160156	2	481.779916	961.545279	-0.60945	-0.00029362	3.6791	0.0017725	3.0697	0.0014789	481.78145280747134	84.58	0.45329	84.507	84.221	84.674	-0.072769					19	10	2	0	0	0	0.027866	1	10573	10573		19.36	5.5846	1	182180	+		50796	28972	35397	35450	56140	56140					0.06296836567082664
MCNSPTNGEY	10	Unmodified	_MCNSPTNGEY_					0	0	0			REV__ENST00000603864.5_1_12:51663252-51663339:-|nuORF	REV__ENST00000603864.5_1_12:51663252-51663339:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2103881835938	2	558.210249	1114.40594	-0.42831	-0.00023909	-0.17889	-9.986E-05	-0.6072	-0.00033895	558.2101602377339	35.08	1.0245	34.868	34.56	35.584	-0.21246					79	25	5	0	0	0	0.98754	1	2609	2609		47.657	1.7054	1	10412000	+		50797	35899	35398	35451	56141	56141					-0.14668197578907893
MCNSPTNGEY	10	Unmodified	_MCNSPTNGEY_					0	0	0			REV__ENST00000603864.5_1_12:51663252-51663339:-|nuORF	REV__ENST00000603864.5_1_12:51663252-51663339:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2100830078125	2	558.210249	1114.40594	-0.66255	-0.00036984	0.016632	9.2839E-06	-0.64592	-0.00036056	558.2102777295997	35.002	0.96864	34.816	34.519	35.488	-0.18675					74	24	5	0	0	0	1.0508	1	2607	2607		39.253	2.0937	1	10341000	+		50798	35899	35398	35451	56142	56142					-0.14668197578907893
MCNVFKPLF	9	Unmodified	_MCNVFKPLF_					0	0	0		ENST00000462917.1_1_17:39847847-39847877:+|nuORF	ENST00000462917.1_1_17:39847847-39847877:+|nuORF	ENST00000462917.1_1_17:39847847-39847877:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.7785034179688	2	549.777373	1097.54019	-0.60847	-0.00033452	3.113	0.0017115	2.5045	0.0013769	549.7793035231639	102.24	0.78764	102.24	101.91	102.69	0					57	17	4	0	0	0	0.64155	1	13083	13083		50.025	0	1	906480			50799	14721	35399	35452	56143	56143					-0.004674672955616188
MCPISQVSKP	10	Unmodified	_MCPISQVSKP_					0	0	0			REV__GRIA1|p.M887V|1|0.52|ENSG00000155511|chr5:153811163-153811163|A/G|missense_variant	REV__GRIA1|p.M887V|1|0.52|ENSG00000155511|chr5:153811163-153811163|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2755126953125	2	545.275195	1088.53584	-0.30268	-0.00016504	-1.4297	-0.00077958	-1.7324	-0.00094462	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	1.0344	1	9804	9804		41.427	2.673	1	57394000	+		50800	36083	35400	35453	56144	56144					-0.004889765091093068
MCQLIAKIY	9	Carbamidomethyl (C)	_MC(Carbamidomethyl (C))QLIAKIY_	MC(1)QLIAKIY		MC(53)QLIAKIY		0	1	0		ENST00000555166.5_2_14:57876459-57876507:+|nuORF	ENST00000555166.5_2_14:57876459-57876507:+|nuORF	ENST00000555166.5_2_14:57876459-57876507:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.3026733398438	2	570.301213	1138.58787	0.043408	2.4756E-05	2.8596	0.0016308	2.903	0.0016556	570.3027282595444	99.263	1.6227	99.095	98.24	99.863	-0.16862					123	39	5	0	0	0	0.59099	1	12309	12309		53.351	7.3995	1	1337000			50801	16675	35401	35454	56145	56145	221				0.02412186904666669
MCRIRFVYET	10	Unmodified	_MCRIRFVYET_					0	0	0			REV__IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	REV__IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.2540283203125	3	439.886259	1316.63695	-1.1234	-0.00049417	-2.9412	-0.0012938	-4.0646	-0.001788	439.8852986828587	38.088	0.4836	38.088	37.836	38.319	0					22	14	3	0	0	0	0.03519	1	3147	3147		12.207	0	1	142770	+		50802	23443	35402	35455	56146	56146					-0.008705248063733961
MCSQLQAQQS	10	Carbamidomethyl (C)	_MC(Carbamidomethyl (C))SQLQAQQS_	MC(1)SQLQAQQS		MC(71)SQLQAQQS		0	1	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.7542114257812	2	590.757898	1179.50124	-1.6447	-0.00097162	-4.4817	-0.0026476	-6.1264	-0.0036192	590.7551769653325	79.36	0.66466	79.188	78.861	79.525	-0.17226					38	15	3	0	0	0	0.65479	1	9805	9805		70.816	19.624	1	579370			50803	7968	35403	35456	56147	56147	95				-0.08132844387887417
MCSQLQAQQS	10	Carbamidomethyl (C)	_MC(Carbamidomethyl (C))SQLQAQQS_					0	1	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	590.757898	1179.50124	-1.5675	-0.000926	-4.3872	-0.0025918	-5.9546	-0.0035178	590.7551703850047	79.181	0.62089	79.181	78.91	79.53	0	-0.00087413	0.00096955	NaN	70.816	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	703940			50804	7968	35403	35456			95				-0.08132844387887417
MCSQLQAQQS	10	Carbamidomethyl (C)	_MC(Carbamidomethyl (C))SQLQAQQS_					0	1	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	590.757898	1179.50124	0.43386	0.00025631	-6.6724	-0.0039418	-6.2385	-0.0036855	590.7538285631808	79.159	0.65494	79.177	78.903	79.558	0.018669	-0.0047397	-0.0017305	NaN	70.816	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	655650			50805	7968	35403	35456			95				-0.08132844387887417
MCSSGGPVDRA	11	Unmodified	_MCSSGGPVDRA_					0	0	0		ENSG00000127993|ENST00000265732|RBM48;nc|ENSG00000127993|Q5RL73-2|RBM48	ENSG00000127993|ENST00000265732|RBM48	ENSG00000127993|ENST00000265732|RBM48	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.234130859375	2	540.234058	1078.45356	-0.69106	-0.00037333	0.10853	5.8634E-05	-0.58253	-0.0003147	540.2341320885131	26.724	1.482	26.724	26.283	27.765	0					110	37	4	0	0	0	0.95882	1	1422	1422		45.972	3.108	1	5851700			50806	4273	35404	35457	56148	56148					-0.0825249858803545
MCSSGGPVDRA	11	Unmodified	_MCSSGGPVDRA_					0	0	0		ENSG00000127993|ENST00000265732|RBM48;nc|ENSG00000127993|Q5RL73-2|RBM48	ENSG00000127993|ENST00000265732|RBM48	ENSG00000127993|ENST00000265732|RBM48	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2340087890625	2	540.234058	1078.45356	-0.98358	-0.00053136	0.37628	0.00020328	-0.6073	-0.00032809	540.2342969035095	26.695	1.6262	26.672	26.243	27.869	-0.023088					122	41	5	0	0	0	0.90725	1	1375	1375		51.193	0	1	6429000			50807	4273	35404	35457	56149	56149					-0.0825249858803545
MCTGYNVLT	9	Unmodified	_MCTGYNVLT_					0	0	0			REV__ENSG00000187678|ENST00000434127|SPRY4	REV__ENSG00000187678|ENST00000434127|SPRY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7784729003906	2	501.225171	1000.43579	-0.047797	-2.3957E-05	0.44319	0.00022214	0.39539	0.00019818	501.22531409808346	64.025	0.36365	63.773	63.695	64.059	-0.25141					12	9	2	0	0	0	0.024313	1	7508	7508		60.118	19.546	1	104590	+		50808	27957	35405	35458	56150	56150					-0.06441213842924753
MCTGYNVLT	9	Unmodified	_MCTGYNVLT_					0	0	0			REV__ENSG00000187678|ENST00000434127|SPRY4	REV__ENSG00000187678|ENST00000434127|SPRY4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.225171	1000.43579	-0.037988	-1.9041E-05	-3.3207	-0.0016644	-3.3587	-0.0016835	501.22339959937426	63.696	0.3727	63.469	63.328	63.7	-0.22773	-0.25179	-0.0012717	NaN	60.118	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97234	+		50809	27957	35405	35458							-0.06441213842924753
MCTGYNVLT	9	Unmodified	_MCTGYNVLT_					0	0	0			REV__ENSG00000187678|ENST00000434127|SPRY4	REV__ENSG00000187678|ENST00000434127|SPRY4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.225171	1000.43579	-0.13082	-6.557E-05	-2.5116	-0.0012589	-2.6425	-0.0013245	501.22364110416936	63.775	0.45607	63.583	63.342	63.798	-0.19243	-0.13754	-0.0004606	NaN	60.118	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94857	+		50810	27957	35405	35458							-0.06441213842924753
MCTHYRLRGE	10	Unmodified	_MCTHYRLRGE_					0	0	0			REV__ENSG00000087095|ENST00000407008|NLK	REV__ENSG00000087095|ENST00000407008|NLK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.84649658203125	3	422.534108	1264.5805	-0.070061	-2.9603E-05	3.3202	0.0014029	3.2501	0.0013733	422.53504989145966	33.291	0.93088	33.06	32.383	33.314	-0.23107					46	22	3	0	0	0	0.03519	1	2387	2387		40.058	15.826	1	322530	+		50811	20787	35406	35459	56151	56151					-0.04121152643051573
MCTNQKKN	8	Unmodified	_MCTNQKKN_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.259765625	2	483.728412	965.442271	0.012073	5.8398E-06	3.1542	0.0015258	3.1663	0.0015316	483.7298754457396	27.743	0.41537	27.586	27.349	27.764	-0.15664					22	9	3	0	0	0	0.027866	1	1513	1513		30.504	0	1	201560	+		50812	20729	35407	35460	56152	56152					-0.04183275891534777
MCYALCNKA	9	Unmodified	_MCYALCNKA_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.29290771484375	2	508.721741	1015.42893	-0.28727	-0.00014614	-3.8292	-0.001948	-4.1164	-0.0020941	509.2212631038917	53.43	0.29836	53.233	53.089	53.387	-0.19739					11	7	2	0	0	0	0.024487	1	5575	5575		40.573	13.88	1	109480			50813	7836	35408	35461	56153	56153					-0.07816849995151642
MCYLRGGFVKP	11	Unmodified	_MCYLRGGFVKP_					0	0	0			REV__ENSG00000173809|ENST00000639142|TDRD12	REV__ENSG00000173809|ENST00000639142|TDRD12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.7271423339844	3	424.21935	1269.63622	-0.90902	-0.00038562	1.5498	0.00065748	0.64082	0.00027185	424.2200185076795	35.104	0.67706	35.104	34.629	35.306	0					38	17	3	0	0	0	0.024828	1	2610	2610		18.531	5.7193	1	245880	+		50814	26809	35409	35462	56154	56154					0.012186805445480786
MCYLRGGFVKP	11	Unmodified	_MCYLRGGFVKP_					0	0	0			REV__ENSG00000173809|ENST00000639142|TDRD12	REV__ENSG00000173809|ENST00000639142|TDRD12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.72705078125	3	424.21935	1269.63622	-0.76112	-0.00032288	1.312	0.00055657	0.55087	0.00023369	424.22000574235335	34.79	0.72526	34.768	34.397	35.122	-0.021763					40	18	4	0	0	0	0.02477	1	2557	2557		22.562	4.0305	1	195830	+		50815	26809	35409	35462	56155	56155					0.012186805445480786
MDALGPFNFV	10	Unmodified	_MDALGPFNFV_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J;nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J;ENST00000461241.1_1_22:31518992-31523076:+|nuORF	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7683715820312	2	555.76806	1109.52157	0.89827	0.00049923	-1.2991	-0.00072202	-0.40088	-0.0002228	555.7675702459733	99.395	1.0446	99.27	98.711	99.756	-0.12458					41	27	2	0	0	0	1.0122	1	12337	12337		44.377	3.8046	1	84867			50816	9412	35410	35463	56156	56156					-0.028813056657554625
MDALKQLT	8	Unmodified	_MDALKQLT_					0	0	0			REV__nc|ENSG00000106852|Q9UPM6-2|LHX6	REV__nc|ENSG00000106852|Q9UPM6-2|LHX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2681884765625	2	460.249503	918.484453	0.18833	8.6679E-05	-0.025605	-1.1784E-05	0.16273	7.4895E-05	460.2493220173124	74.947	0.47905	74.947	74.676	75.155	0					19	11	2	0	0	0	0.027866	1	9176	9176		19.36	1.0356	1	345420	+		50817	36548	35411	35464	56157	56157					0.021950227884758533
MDALQALVD	9	Unmodified	_MDALQALVD_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79815673828125	2	488.244418	974.474282	-0.17546	-8.5665E-05	-3.3874	-0.0016539	-3.5628	-0.0017395	488.2427061568819	75.326	0.56164	75.336	75.012	75.574	0.010376					23	14	2	0	0	0	0.023635	1	9200	9200		47.657	0	1	287110			50818	4256;18250;18249	35412	35465	56158	56158					-0.013975849367625415
MDASAFEIF	9	Unmodified	_MDASAFEIF_					0	0	0		nc|ENSG00000158062|Q5T124-5|UBXN11;nc|ENSG00000158062|Q5T124-3|UBXN11;nc|ENSG00000158062|Q5T124-8|UBXN11;nc|ENSG00000158062|Q5T124-4|UBXN11;nc|ENSG00000158062|Q5T124-2|UBXN11;ENSG00000158062|ENST00000374222|UBXN11	nc|ENSG00000158062|Q5T124-5|UBXN11	nc|ENSG00000158062|Q5T124-5|UBXN11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7929077148438	2	515.731143	1029.44773	0.040619	2.0948E-05	0.43883	0.00022632	0.47945	0.00024727	515.7311893223277	71.362	2.1472	71.087	70.611	72.758	-0.27509					90	50	3	0	0	0	0.024325	1	8422	8422		50.025	7.5501	1	354960			50819	6642	35413	35466	56159	56159					-0.06581273828078338
MDCHRALEP	9	Unmodified	_MDCHRALEP_					0	0	0		ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2384033203125	2	536.239144	1070.46373	-1.0488	-0.00056243	-1.2148	-0.00065142	-2.2636	-0.0012138	536.2386558258349	60.689	1.9053	60.475	60.157	62.062	-0.21339					130	50	5	0	0	0	0.094442	1	6998	6998		112.41	5.4034	1	26122000			50820	5801	35414	35467	56160	56160					-0.0686789086284989
MDCHRALEP	9	Unmodified	_MDCHRALEP_					0	0	0		ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	536.239144	1070.46373	-2.4892	-0.0013348	-0.0069065	-3.7036E-06	-2.4961	-0.0013385	536.2394330046777	60.399	1.8368	60.478	60.127	61.964	0.078888	-0.058351	0.00069248	NaN	112.41	133	48	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35168000			50821	5801	35414	35467							-0.0686789086284989
MDDELLAQP	9	Unmodified	_MDDELLAQP_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1;ENST00000489901.1_1_2:179997000-180008522:-|nuORF	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3001098632812	2	516.239332	1030.46411	-0.67234	-0.00034709	0.4032	0.00020815	-0.26914	-0.00013894	516.2393620903093	33.834	1.5722	33.834	33.018	34.59	0					68	41	2	0	0	0	0.024374	1	2547	2547		25.574	3.6142	1	131450			50822	9616	35415	35468	56161	56161					-0.0499019266196683
MDDKDQLFHP	10	Unmodified	_MDDKDQLFHP_					0	0	0		nc|ENSG00000120160|Q9NQ60-3|EQTN;ENSG00000120160|ENST00000380032|EQTN	nc|ENSG00000120160|Q9NQ60-3|EQTN	nc|ENSG00000120160|Q9NQ60-3|EQTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2285461425781	3	415.857134	1244.54957	0.30724	0.00012777	-2.4387	-0.0010141	-2.1314	-0.00088638	415.8558834639563	55.203	0.45188	54.997	54.758	55.21	-0.20613					24	12	3	0	0	0	0.03519	1	5860	5860		20.837	0	1	238040			50823	3796	35416	35469	56162	56162					-0.0629202747634281
MDDTEHPE	8	Unmodified	_MDDTEHPE_					0	0	0		ENST00000458451.1_1_7:108634090-108634168:-|nuORF;ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3	ENST00000458451.1_1_7:108634090-108634168:-|nuORF	ENST00000458451.1_1_7:108634090-108634168:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2562255859375	2	487.182014	972.349476	-0.5567	-0.00027121	-1.6115	-0.0007851	-2.1682	-0.0010563	487.18099880887314	52.96	0.18117	53.056	52.98	53.161	0.095669					6	4	2	0	0	0	0.027866	1	5646	5646		7.6903	0	1	59664			50824	6413	35417	35470	56163	56163					-0.13780502143924878
MDEEACPN	8	Unmodified	_MDEEACPN_					0	0	0			REV__ENST00000474239.1_1_1:11724615-11732081:+|nuORF	REV__ENST00000474239.1_1_1:11724615-11732081:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.7682800292969	2	454.659861	907.305168	-0.00095804	-4.3558E-07	3.6549	0.0016617	3.654	0.0016613	454.66254350783936	70.931	1.3267	70.674	70.439	71.766	-0.25713					53	32	3	0	0	0	0.027866	1	8307	8307		8.2313	0	1	155980	+		50825	22287	35418	35471	56164	56164					-0.15219229561762404
MDEIKLGPN	9	Unmodified	_MDEIKLGPN_					0	0	0		ENST00000456674.1_1_2:11448506-11449064:+|nuORF	ENST00000456674.1_1_2:11448506-11449064:+|nuORF	ENST00000456674.1_1_2:11448506-11449064:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2923278808594	2	508.757692	1015.50083	-0.19274	-9.8058E-05	0.95281	0.00048475	0.76007	0.00038669	508.7581885768488	50.449	0.90684	50.53	50.276	51.183	0.08099					43	25	3	0	0	0	0.024209	1	5276	5276		47.657	17.154	1	1661000			50826	14599	35419	35472	56165	56165					-0.0062989604541598965
MDEIKLGPN	9	Unmodified	_MDEIKLGPN_					0	0	0		ENST00000456674.1_1_2:11448506-11449064:+|nuORF	ENST00000456674.1_1_2:11448506-11449064:+|nuORF	ENST00000456674.1_1_2:11448506-11449064:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2923278808594	2	508.757692	1015.50083	-0.74248	-0.00037774	-0.15481	-7.8759E-05	-0.89729	-0.0004565	508.7575918166998	50.771	0.76277	50.852	50.676	51.439	0.08099					35	20	2	0	0	0	0.024209	1	5276	5276		47.657	17.154	1	1758400			50827	14599	35419	35472	56166	56166					-0.0062989604541598965
MDERFYSV	8	Unmodified	_MDERFYSV_					0	0	0		ENST00000499666.6_1_4:100802812-100802947:-|nuORF	ENST00000499666.6_1_4:100802812-100802947:-|nuORF	ENST00000499666.6_1_4:100802812-100802947:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7609252929688	2	523.734217	1045.45388	0.037443	1.961E-05	1.4911	0.00078094	1.5285	0.00080055	523.7350967483062	59.924	0.34291	59.675	59.457	59.8	-0.24842					18	8	3	0	0	0	0.027866	1	6629	6629		27.882	9.5578	1	162840			50828	15641	35420	35473	56167	56167					-0.06702755596552379
MDESVSIV	8	Oxidation (M)	_M(Oxidation (M))DESVSIV_		M(1)DESVSIV		M(50)DESVSIV	0	0	1			REV__ENSG00000067334|ENST00000436063|DNTTIP2	REV__ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2078552246094	2	448.207501	894.400449	0.33657	0.00015085	1.1834	0.00053043	1.52	0.00068128	448.2079899366077	20.988	0.72489	20.811	20.484	21.209	-0.17721					37	14	4	0	0	0	0.91239	1	616	616		50.025	12.996	1	710840	+		50829	20358	35421	35474	56168	56168		625			-0.05097553099051311
MDFLYSDSY	9	Unmodified	_MDFLYSDSY_					0	0	0		ENST00000332624.7_1_2:202285189-202285387:-|nuORF	ENST00000332624.7_1_2:202285189-202285387:-|nuORF	ENST00000332624.7_1_2:202285189-202285387:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.7316284179688	2	570.73134	1139.44813	0.24385	0.00013917	-0.14437	-8.2398E-05	0.099474	5.6773E-05	570.731097082448	72.552	2.7024	72.287	70.864	73.566	-0.26479					140	65	3	0	0	0	0.64155	1	8535	8535		50.025	5.9077	1	645900			50830	12359	35422	35475	56169	56169					-0.11601898898879881
MDGEKFNLI	9	Unmodified	_MDGEKFNLI_					0	0	0			REV__ENST00000325642.7_1_14:60759216-60759402:+|nuORF	REV__ENST00000325642.7_1_14:60759216-60759402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.8214111328125	2	533.765517	1065.51648	-0.65791	-0.00035117	-2.4865	-0.0013272	-3.1444	-0.0016784	533.7641168339969	69.022	0.9986	69.037	68.795	69.794	0.015129					55	25	3	0	0	0	0.024457	1	8327	8327		29.15	0	1	783440	+		50831	30392	35423	35476	56170	56170					-0.013656095283522518
MDGNTTENIN	10	Unmodified	_MDGNTTENIN_					0	0	0		ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3060302734375	2	554.732403	1107.45025	-0.93682	-0.00051968	-1.9608	-0.0010877	-2.8976	-0.0016074	554.731127592358	43.88	0.43092	43.88	43.658	44.089	0					14	11	2	0	0	0	0.03519	1	4121	4121		61.691	3.4614	1	161950			50832	7749	35424	35477	56171	56171					-0.09917470161053643
MDHFLGMT	8	Unmodified	_MDHFLGMT_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2540283203125	2	476.206781	950.399009	0.01492	7.1048E-06	-3.2016	-0.0015246	-3.1867	-0.0015175	476.20524196697363	26.955	0.8901	26.942	26.537	27.427	-0.012983					41	22	2	0	0	0	0.027866	1	1390	1390		50.025	0	1	311140	+		50833	22782	35425	35478	56172	56172					-0.07817465668824752
MDHFLGMT	8	Unmodified	_MDHFLGMT_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.2540283203125	2	476.206781	950.399009	-0.42817	-0.0002039	-2.7913	-0.0013292	-3.2194	-0.0015331	476.2053679079888	26.625	0.80525	26.706	26.331	27.136	0.081293					39	19	3	0	0	0	0.027866	1	1326	1326		50.025	0	1	252910	+		50834	22782	35425	35478	56173	56173					-0.07817465668824752
MDHINKLT	8	Unmodified	_MDHINKLT_					0	0	0		ENSG00000047644|ENST00000380861|WWC3;nc|ENSG00000047644|Q9ULE0-2|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3132629394531	2	486.252577	970.490601	-0.76851	-0.00037369	-2.3744	-0.0011546	-3.1429	-0.0015283	486.251239062386	44.356	0.47031	44.393	44.142	44.612	0.0369					21	13	2	0	0	0	0.027866	1	4151	4151		55.504	0	1	323350			50835	1108	35426	35479	56174	56174					0.004175410200218721
MDHKEGEIK	9	Unmodified	_MDHKEGEIK_					0	0	0			REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	REV__nc|ENSG00000132792|Q8WYA6-3|CTNNBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8033447265625	2	543.766049	1085.51754	-0.6995	-0.00038037	-2.2419	-0.0012191	-2.9414	-0.0015994	543.764601276431	57.499	0.76903	57.499	56.872	57.641	0					47	20	3	0	0	0	0.024313	1	6389	6389		51.193	3.5354	1	538720	+		50836	23320	35427	35480	56175	56175					-0.021793951594645478
MDIGLGLVAV	10	Unmodified	_MDIGLGLVAV_					0	0	0			REV__ENSG00000179256|ENST00000316048|SMCO3	REV__ENSG00000179256|ENST00000316048|SMCO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7289123535156	2	494.280803	986.547053	-0.36124	-0.00017855	-4.21	-0.0020809	-4.5712	-0.0022595	494.2784456772184	62.781	0.85518	62.56	62.442	63.297	-0.22097					32	22	2	0	0	0	0.03519	1	7172	7172		23.042	7.4007	1	615650	+		50837	27250	35428	35481	56176	56176					0.053241688566799894
MDIIKKIN	8	Unmodified	_MDIIKKIN_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79058837890625	2	487.788795	973.563038	0.29152	0.0001422	3.4181	0.0016673	3.7097	0.0018095	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	1.0106	2	10330	10330;10474		35.618	6.4687	1	2091900			50838	4483	35429	35482	56177;56178	56177					0.07519875093578321
MDIIKKIN	8	Unmodified	_MDIIKKIN_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7911071777344	2	487.788795	973.563038	0.37956	0.00018514	3.3532	0.0016356	3.7327	0.0018208	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.0338	1	9958	9958		31.955	1.6371	1	2659000			50839	4483	35429	35482	56179	56179					0.07519875093578321
MDINLKAPV	9	Unmodified	_MDINLKAPV_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3122253417969	2	500.778428	999.542302	-0.30243	-0.00015145	1.3637	0.0006829	1.0612	0.00053145	500.7786246665459	78.117	1.2463	78.133	77.234	78.48	0.015907					58	29	3	0	0	0	0.024427	1	9529	9529		34.173	2.5937	1	814860			50840	4326	35430	35483	56180	56180					0.04251284713916448
MDITQVRLEW	10	Unmodified	_MDITQVRLEW_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MSMS	OPSCC_39_ClassI_Rep-2	2	430.885986328125	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.065	1	21.989	21.489	22.489	-0.075296								0	0	0	0.74733	1	729	729		41.427	0	1				50841	858	35431	35484	56181	56181					0.010571113458354375
MDIYVCLK	8	Unmodified	_MDIYVCLK_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF;LIFR|p.K450Tfs*17|1|0.09|ENSG00000113594|chr5:38504064-38504065|-/ACTATCCATG|frameshift_variant;ENST00000512723.1_1_5:38528826-38530749:-|nuORF	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7665710449219	2	492.748282	983.48201	0.75095	0.00037003	1.7889	0.00088147	2.5398	0.0012515	492.7494198180812	78.058	0.25035	77.864	77.681	77.931	-0.19389					8	5	2	0	0	0	0.027866	1	9593	9593		53.351	0	1	45106			50842	3308	35432	35485	56182	56182					-0.010391489408220878
MDIYYFPKLI	10	Unmodified	_MDIYYFPKLI_					0	0	0		MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|31|3|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|31|3|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|31|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7798767089844	3	434.898271	1301.67298	-0.29578	-0.00012864	-0.05012	-2.1797E-05	-0.3459	-0.00015043	434.8980745500971	42.502	0.37855	42.27	42.079	42.457	-0.23186					14	9	2	0	0	0	0.03519	1	3841	3841		7.0187	0.35908	1	115430			50843	17967	35433	35486	56183	56183					0.03421255642115284
MDKEENRR	8	Unmodified	_MDKEENRR_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MSMS	OPSCC_39_ClassI_Rep-2	2	539.2582397460938	2	539.258922	1076.50329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.745	1	16.598	16.098	17.098	-0.14753								0	0	0	1.0126	1	85	85		19.36	1.995	1				50844	1964	35434	35487	56184	56184					-0.03190047587736444
MDKFKEQSP	9	Unmodified	_MDKFKEQSP_					0	0	0			REV__COQ5|p.E296K|1|0.22|ENSG00000110871|chr12:120503882-120503882|C/T|missense_variant	REV__COQ5|p.E296K|1|0.22|ENSG00000110871|chr12:120503882-120503882|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.7926635742188	2	555.268424	1108.5223	-0.17527	-9.7323E-05	-2.2774	-0.0012646	-2.4526	-0.0013619	555.2672125827515	52.881	1.1786	52.691	52.067	53.245	-0.18982					45	29	2	0	0	0	0.024466	1	5557	5557		12.812	0	1	459170	+		50845	19609	35435	35488	56185	56185					-0.027625110166809463
MDKLAPLGR	9	Unmodified	_MDKLAPLGR_					0	0	0		ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.8214416503906	2	500.784044	999.553536	0.33266	0.00016659	-1.291	-0.0006465	-0.9583	-0.0004799	500.7831037631099	67.673	0.38905	67.697	67.471	67.86	0.023911					19	9	4	0	0	0	0.024427	1	7989	7989		51.335	7.2187	1	294460			50846	9924	35436	35489	56186	56186					0.05374106808073975
MDKLAPLGR	9	Unmodified	_MDKLAPLGR_					0	0	0		ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	ENSG00000196812|ENST00000340487|ZSCAN16	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.784044	999.553536	0.21006	0.0001052	5.3422	0.0026753	5.5523	0.0027805	500.78657518570026	68.022	0.28265	67.788	67.636	67.918	-0.23376	0.10841	0.0057046	NaN	34.173	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68026			50847	9924	35436	35489							0.05374106808073975
MDKPFMRFIEH	11	Unmodified	_MDKPFMRFIEH_					0	0	0			REV__ST8SIA5|p.Q144H|1|0.31|ENSG00000101638|chr18:46688799-46688799|C/A|missense_variant	REV__ST8SIA5|p.Q144H|1|0.31|ENSG00000101638|chr18:46688799-46688799|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.76739501953125	3	484.23718	1449.68971	-0.51682	-0.00025026	4.4299	0.0021451	3.913	0.0018948	484.2391912105533	27.178	0.41961	27.01	26.723	27.142	-0.16816					13	9	2	0	0	0	0.024797	1	1462	1462		10.998	0	1	78763	+		50848	37583	35437	35490	56187	56187					-0.017145667435670475
MDKPGSGLHS	10	Unmodified	_MDKPGSGLHS_					0	0	0		ENST00000531569.1_1_11:35936821-35939650:-|nuORF	ENST00000531569.1_1_11:35936821-35939650:-|nuORF	ENST00000531569.1_1_11:35936821-35939650:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.322021484375	2	514.745116	1027.47568	0.46124	0.00023742	-3.1651	-0.0016292	-2.7039	-0.0013918	514.7431586630954	71.7	1.2987	71.411	70.719	72.018	-0.28858					68	33	3	0	0	0	0.03519	1	8698	8698		39.253	5.7372	1	1767300			50849	16265	35438	35491	56188	56188					-0.036959508479640135
MDKRRFSA	8	Unmodified	_MDKRRFSA_					0	0	0			REV__ENST00000265713.6_2_8:41906364-41906463:-|nuORF	REV__ENST00000265713.6_2_8:41906364-41906463:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.78045654296875	2	505.763643	1009.51273	-0.88215	-0.00044616	-3.7156	-0.0018792	-4.5978	-0.0023254	505.76166394802675	38.229	0.70109	38.008	37.797	38.498	-0.22149					29	19	2	0	0	0	0.027866	1	3198	3198		35.618	12.096	1	200090	+		50850	29743	35439	35492	56189	56189					0.00835765488443485
MDKYDVIK	8	Unmodified	_MDKYDVIK_					0	0	0		nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.83978271484375	2	506.26261	1010.51067	-0.27631	-0.00013989	1.8417	0.00093241	1.5654	0.00079252	506.7666738918197	55.121	0.10563	54.97	54.894	55	-0.15036					4	2	2	0	0	0	0.027866	1	6029	6029		15.642	0	1	44493			50851	9967	35440	35493	56190	56190					0.0058329195995838745
MDLEGMYLYQ	10	Unmodified	_MDLEGMYLYQ_					0	0	0		ENST00000468026.1_1_2:219537552-219537744:+|nuORF;ENST00000473557.1_1_2:219537552-219538357:+|nuORF	ENST00000468026.1_1_2:219537552-219537744:+|nuORF	ENST00000468026.1_1_2:219537552-219537744:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.7037658691406	3	421.519242	1261.5359	-0.1521	-6.4115E-05	3.6101	0.0015217	3.458	0.0014576	421.52063281124595	34.001	3.2269	33.794	32.363	35.59	-0.20696					156	81	4	0	0	0	0.03519	1	2405	2405		26.063	0	1	665870			50852	14861	35441	35494	56191	56191					-0.08441021299768181
MDLILMRAP	9	Unmodified	_MDLILMRAP_					0	0	0		ENST00000559291.5_1_15:40846282-40849442:-|nuORF	ENST00000559291.5_1_15:40846282-40849442:-|nuORF	ENST00000559291.5_1_15:40846282-40849442:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2883911132812	2	530.288105	1058.56166	-0.97471	-0.00051688	1.6131	0.00085538	0.63834	0.00033851	530.2887112521873	45.69	0.71638	45.539	45.309	46.026	-0.15157					52	20	5	0	0	0	0.39228	1	4456	4456		66.429	20.457	1	7409300			50853	16775	35442	35495	56192	56192					0.034719177331453466
MDLINLLTL	9	Unmodified	_MDLINLLTL_					0	0	0		ENSG00000152689|ENST00000403687|RASGRP3;nc|ENSG00000152689|Q8IV61-2|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3036499023438	2	523.301736	1044.58892	-0.57229	-0.00029948	3.7093	0.0019411	3.137	0.0016416	523.3036214104253	85.222	2.9903	85.164	83.29	86.28	-0.057617					185	70	4	0	0	0	0.69446	1	10691	10691		46.457	5.6786	1	2871100			50854	6295	35443	35496	56193	56193					0.06840724545213561
MDLISRTRS	9	Unmodified	_MDLISRTRS_					0	0	0		nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7906494140625	2	539.787315	1077.56008	0.13114	7.0788E-05	3.5013	0.00189	3.6324	0.0019607	539.7890920943255	59.234	1.0408	59.053	58.546	59.587	-0.18134					43	25	2	0	0	0	0.02435	1	6502	6502		42.396	6.7778	1	1043400			50855	18610	35444	35497	56194	56194					0.024399999687602758
MDLKALLLE	9	Unmodified	_MDLKALLLE_					0	0	0		ENSG00000183258|ENST00000330503|DDX41;ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF	ENSG00000183258|ENST00000330503|DDX41	ENSG00000183258|ENST00000330503|DDX41	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3048706054688	2	523.301736	1044.58892	-0.20164	-0.00010552	4.1006	0.0021459	3.899	0.0020403	523.3037912633964	99.824	1.0285	99.834	99.446	100.47	0.010117					42	25	2	0	0	0	0.76818	1	12751	12751		41.427	0.85399	1	1714900			50856	9210	35445	35498	56195	56195					0.06840724545213561
MDLKALLLE	9	Unmodified	_MDLKALLLE_					0	0	0		ENSG00000183258|ENST00000330503|DDX41;ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF	ENSG00000183258|ENST00000330503|DDX41	ENSG00000183258|ENST00000330503|DDX41	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.303955078125	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.82115	1	10798	10798		37.812	0.65241	1	11897000			50857	9210	35445	35498	56196	56196					0.06840724545213561
MDLKALLLE	9	Unmodified	_MDLKALLLE_					0	0	0		ENSG00000183258|ENST00000330503|DDX41;ENST00000505081.5_1_5:176938794-176940626:-|nuORF;ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF	ENSG00000183258|ENST00000330503|DDX41	ENSG00000183258|ENST00000330503|DDX41	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3038330078125	2	523.301736	1044.58892	0.12304	6.4388E-05	3.2645	0.0017083	3.3876	0.0017727	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	0.82115	1	10352	10352		37.812	3.639	1	3963900			50858	9210	35445	35498	56197	56197					0.06840724545213561
MDLLEPKKN	9	Unmodified	_MDLLEPKKN_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6	REV__ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8197631835938	2	544.294442	1086.57433	-0.71301	-0.00038809	-0.149	-8.1101E-05	-0.86201	-0.00046919	544.2944360552332	47.717	0.74922	47.564	47.015	47.764	-0.15301					42	21	3	0	0	0	0.024292	1	4820	4820		49.442	1.7842	1	601990	+		50859	28330	35446	35499	56198	56198					0.03450652397077647
MDLLEPKKN	9	Unmodified	_MDLLEPKKN_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6	REV__ENSG00000197616|ENST00000405093|MYH6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.294442	1086.57433	-0.49123	-0.00026737	-0.16833	-9.1622E-05	-0.65956	-0.00035899	544.2942245858942	47.528	0.77058	47.431	47.122	47.893	-0.096649	-0.067348	-6.528E-05	NaN	49.442	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2284100	+		50860	28330	35446	35499							0.03450652397077647
MDLLEPKKN	9	Unmodified	_MDLLEPKKN_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6	REV__ENSG00000197616|ENST00000405093|MYH6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.294442	1086.57433	-0.47139	-0.00025657	-0.24021	-0.00013075	-0.7116	-0.00038732	544.2942095686931	47.62	0.89773	47.434	47.004	47.902	-0.18684	-0.064956	-0.00014353	NaN	49.442	68	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2447000	+		50861	28330	35446	35499							0.03450652397077647
MDLLLTVAAV	10	Unmodified	_MDLLLTVAAV_					0	0	0		ENST00000370489.4_1_10:101439076-101439178:+|nuORF	ENST00000370489.4_1_10:101439076-101439178:+|nuORF	ENST00000370489.4_1_10:101439076-101439178:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3034057617188	2	523.301736	1044.58892	0.11837	6.1943E-05	2.9484	0.0015429	3.0668	0.0016049	523.3032736484524	85.135	2.651	85.135	83.649	86.3	0					186	62	4	0	0	0	0.85955	1	10720	10720		56.721	11.699	1	2671500			50862	12961	35447	35500	56199	56199					0.06840724545190824
MDLLTRLM	8	Oxidation (M)	_MDLLTRLM(Oxidation (M))_		MDLLTRLM(1)		M(-85)DLLTRLM(85)	0	0	1		ENST00000511653.1_2_4:83989633-83989663:+|nuORF	ENST00000511653.1_2_4:83989633-83989663:+|nuORF	ENST00000511653.1_2_4:83989633-83989663:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7666320800781	2	504.764463	1007.51437	0.069937	3.5302E-05	3.6279	0.0018312	3.6979	0.0018665	504.7663389447614	63.739	1.9018	63.481	62.835	64.736	-0.25824					157	48	5	0	0	0	0.50239	1	7152	7152		85.359	8.0419	2	31738000			50863	15842	35448	35501	56200	56200		526			0.010916384621850739
MDLTQQAKD	9	Unmodified	_MDLTQQAKD_					0	0	0		nc|ENSG00000124786|Q9H1N7-2|SLC35B3;nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	nc|ENSG00000124786|Q9H1N7-2|SLC35B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.3078002929688	2	525.250231	1048.48591	0.068648	3.6057E-05	2.4647	0.0012946	2.5334	0.0013307	525.250609939136	71.523	0.60906	71.261	70.95	71.559	-0.26199					18	14	2	0	0	0	0.024477	1	8369	8369		35.618	0	1	202430			50864	4077	35449	35502	56201	56201					-0.0363938791340388
MDLVGLLW	8	Unmodified	_MDLVGLLW_					0	0	0			REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF;REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7582092285156	2	473.756964	945.499375	0.32244	0.00015276	2.388	0.0011313	2.7104	0.0012841	473.75808099436915	82.734	1.1183	82.554	82.157	83.275	-0.18079					53	25	3	0	0	0	0.71717	1	9983	9983		65.897	0	1	1089500	+		50865	33636;32578	35450	35503	56202	56202					0.024445146564858078
MDLVGLLW	8	Unmodified	_MDLVGLLW_					0	0	0			REV__ENST00000443339.5_1_3:9475802-9506425:+|nuORF;REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.75830078125	2	473.756964	945.499375	-0.57184	-0.00027091	3.2361	0.0015331	2.6643	0.0012622	473.758466690893	82.687	1.1226	82.547	82.216	83.339	-0.14014					56	25	5	0	0	0	0.95417	1	9975	9975		44.531	0.41427	1	1183700	+		50866	33636;32578	35450	35503	56203	56203					0.024445146564858078
MDLVGSILKN	10	Unmodified	_MDLVGSILKN_					0	0	0		LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant;LDHC|p.V273Efs*14|1|0.07|ENSG00000166796|chr11:18446316-18446317|-/AGAAAACA|frameshift_variant;ENSG00000166796|ENST00000541669|LDHC	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3023681640625	2	545.302267	1088.58998	-0.73895	-0.00040295	-0.61769	-0.00033683	-1.3566	-0.00073978	545.3016948033008	64.518	2.306	64.518	63.917	66.224	0					160	62	3	0	0	0	0.47897	4	7643	7619;7631;7643;7657		90.601	11.15	1	11845000			50867	7606	35451	35504	56204;56205;56206;56207	56206					0.049229389141146385
MDLVGSILKN	10	Unmodified	_MDLVGSILKN_					0	0	0		LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant;LDHC|p.V273Efs*14|1|0.07|ENSG00000166796|chr11:18446316-18446317|-/AGAAAACA|frameshift_variant;ENSG00000166796|ENST00000541669|LDHC	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3021240234375	2	545.302267	1088.58998	-0.66641	-0.00036339	-0.25048	-0.00013659	-0.91689	-0.00049998	545.30223970613	63.426	1.5214	63.175	62.683	64.204	-0.25141					112	34	4	0	0	0	0.076563	2	7403	7403;7415		141.52	33.433	1	22862000			50868	7606	35451	35504	56208;56209	56208					0.049229389141146385
MDLVGSILKN	10	Unmodified	_MDLVGSILKN_					0	0	0		LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant;LDHC|p.V273Efs*14|1|0.07|ENSG00000166796|chr11:18446316-18446317|-/AGAAAACA|frameshift_variant;ENSG00000166796|ENST00000541669|LDHC	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.302490234375	2	545.302267	1088.58998	-1.6826	-0.00091751	0.2883	0.00015721	-1.3943	-0.0007603	545.3021826548577	64.845	2.4406	64.582	63.791	66.231	-0.2626					137	65	3	0	0	0	0.32213	4	7674	7628;7640;7663;7674		106.68	29.365	1	9859300			50869	7606	35451	35504	56210;56211;56212;56213	56213					0.049229389141146385
MDLVGSILKN	10	Unmodified	_MDLVGSILKN_					0	0	0		LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant;LDHC|p.V273Efs*14|1|0.07|ENSG00000166796|chr11:18446316-18446317|-/AGAAAACA|frameshift_variant;ENSG00000166796|ENST00000541669|LDHC	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3016357421875	2	545.302267	1088.58998	0.46477	0.00025344	-1.4784	-0.00080616	-1.0136	-0.00055272	545.3015511392318	63.271	1.4733	63.325	62.76	64.233	0.054104					111	34	4	0	0	0	0.1333	3	7313	7313;7325;7337		129.42	30.792	1	22677000			50870	7606	35451	35504	56214;56215;56216	56214					0.049229389141146385
MDLVGSILKN	10	Unmodified	_MDLVGSILKN_					0	0	0		LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant;LDHC|p.V273Efs*14|1|0.07|ENSG00000166796|chr11:18446316-18446317|-/AGAAAACA|frameshift_variant;ENSG00000166796|ENST00000541669|LDHC	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	LDHC|p.S274Ifs*6|1|0.06|ENSG00000166796|chr11:18446317-18446318|-/AATA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3023681640625	2	545.302267	1088.58998	-0.84249	-0.00045941	-0.53304	-0.00029067	-1.3755	-0.00075008	545.3017386459895	64.538	2.3093	64.583	63.903	66.213	0.045502					137	62	3	0	0	0	0.47897	5	7563	7538;7550;7563;7574;7586		90.601	14.025	1	13089000			50871	7606	35451	35504	56217;56218;56219;56220;56221	56219					0.049229389141146385
MDLVRVPE	8	Unmodified	_MDLVRVPE_					0	0	0			REV__ENSG00000178974|ENST00000313833|FBXO34	REV__ENSG00000178974|ENST00000313833|FBXO34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.8155212402344	2	479.754953	957.495352	-0.26879	-0.00012895	0.33904	0.00016266	0.070256	3.3706E-05	479.7550476904364	48.485	1.4043	48.332	47.924	49.328	-0.15286					70	39	2	0	0	0	0.027866	1	5085	5085		51.335	0	1	454820	+		50872	27221	35452	35505	56222	56222					0.01490425162774045
MDMISDMSQ	9	Unmodified	_MDMISDMSQ_					0	0	0		sp|P03185|NEC2_EBVB9Nuclearegressprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC2PE=1SV=1	sp|P03185|NEC2_EBVB9Nuclearegressprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC2PE=1SV=1	sp|P03185|NEC2_EBVB9Nuclearegressprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3048706054688	2	529.203578	1056.3926	-0.44096	-0.00023336	2.5992	0.0013755	2.1583	0.0011422	529.2050318443385	64.291	0.15543	64.064	63.988	64.144	-0.22773					7	3	3	0	0	0	0.024541	1	7303	7303		24.519	0	1	45708			50873	37918	35453	35506	56223	56223					-0.13333771682505358
MDMVNYSR	8	Unmodified	_MDMVNYSR_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799987792969	2	508.22042	1014.42629	-0.64412	-0.00032735	2.0792	0.0010567	1.4351	0.00072933	508.2212683199831	47.921	0.14316	47.988	47.936	48.079	0.066795					5	3	2	0	0	0	0.027866	1	4805	4805		19.36	0	1	191450	+	+	50874	19522	35454	35507	56224	56224					-0.08034982128435786
MDNWIEKI	8	Unmodified	_MDNWIEKI_					0	0	0			REV__ENST00000423902.6_1_8:61591384-61653896:+|nuORF	REV__ENST00000423902.6_1_8:61591384-61653896:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3075561523438	2	524.760235	1047.50592	-0.22695	-0.00011909	4.087	0.0021447	3.8601	0.0020256	524.762261878077	71.774	0.87196	71.774	71.339	72.211	0					56	22	4	0	0	0	0.027866	1	8654	8654		47.657	9.8458	1	1142800	+		50875	32225	35455	35508	56225	56225					-0.015935921828031496
MDPGELPLLAV	11	Unmodified	_MDPGELPLLAV_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7705688476562	2	577.809925	1153.6053	-2.7068	-0.001564	2.1754	0.0012569	-0.53139	-0.00030704	578.3123740052933	52.08	0.14363	51.811	51.725	51.869	-0.26903					5	3	2	0	0	0	0.024727	1	5368	5368		24.519	0	1	54810	+		50876	27196	35456	35509	56226	56226					0.03463805711317036
MDPKFSYGE	9	Unmodified	_MDPKFSYGE_					0	0	0			REV__ENST00000590416.1_1_19:34712331-34717333:+|nuORF	REV__ENST00000590416.1_1_19:34712331-34717333:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7815551757812	2	537.23405	1072.45355	-0.92133	-0.00049497	3.8426	0.0020644	2.9213	0.0015694	537.2361859932831	66.514	0.45123	66.29	66.026	66.478	-0.22374					21	11	2	0	0	0	0.024427	1	7620	7620		51.335	37.881	1	727930	+		50877	35700	35457	35510	56227	56227					-0.07978175316384295
MDPLPVFLY	9	Unmodified	_MDPLPVFLY_					0	0	0		nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-7|POGZ	nc|ENSG00000143442|Q7Z3K3-7|POGZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.7845458984375	2	547.783179	1093.5518	0.41025	0.00022473	1.3085	0.00071678	1.7188	0.00094151	547.7839600500071	83.873	0.89195	83.662	83.476	84.368	-0.21159					54	20	4	0	0	0	0.52323	1	10138	10138		57.811	5.5121	1	920300			50878	18346	35458	35511	56228	56228					0.00877052999476291
MDPPQMGPA	9	Unmodified	_MDPPQMGPA_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2954406738281	2	472.204238	942.393924	0.13838	6.5342E-05	-0.077443	-3.6569E-05	0.060934	2.8773E-05	472.20402258600694	58.506	0.69193	58.319	58.066	58.758	-0.18705					37	18	3	0	0	0	0.024477	1	6566	6566		20.947	0	1	990220			50879	1766	35459	35512	56229	56229					-0.07957769531435588
MDPPQMGPA	9	Unmodified	_MDPPQMGPA_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.204238	942.393924	0.85324	0.0004029	-0.81747	-0.00038601	0.035762	1.6887E-05	472.2037128033814	58.265	0.62296	58.265	58.056	58.679	0	-0.011405	-0.00039887	NaN	37.812	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	929780			50880	1766	35459	35512							-0.07957769531435588
MDPPQMGPA	9	Unmodified	_MDPPQMGPA_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.204238	942.393924	0.38855	0.00018347	-0.21597	-0.00010198	0.17257	8.149E-05	472.20397436872463	58.153	0.61879	58.244	57.979	58.598	0.091217	-0.031899	0.00016919	NaN	37.812	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1059800			50881	1766	35459	35512							-0.07957769531435588
MDPVDGTQLL	10	Unmodified	_MDPVDGTQLL_					0	0	0		nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000124493|ENST00000538487|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8213500976562	2	544.768257	1087.52196	0.67425	0.00036731	1.5467	0.00084259	2.2209	0.0012099	544.7684791636511	64.013	0.5442	64.059	63.867	64.411	0.045502					21	14	2	0	0	0	0.03519	1	7413	7413		34.173	0	1	125420			50882	4053	35460	35513	56230	56230					-0.01829930736539609
MDQDFLHLF	9	Unmodified	_MDQDFLHLF_					0	0	0		CAPN11|p.G609Cfs*11|1|0.22|ENSG00000137225|chr6:44180952-44180965|GGGCTTTGGCCTGG/-|frameshift_variant;ENSG00000137225|ENST00000398776|CAPN11	CAPN11|p.G609Cfs*11|1|0.22|ENSG00000137225|chr6:44180952-44180965|GGGCTTTGGCCTGG/-|frameshift_variant	CAPN11|p.G609Cfs*11|1|0.22|ENSG00000137225|chr6:44180952-44180965|GGGCTTTGGCCTGG/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	583.2713623046875	2	583.270967	1164.52738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.29	1	101.16	100.66	101.66	-0.12576								0	0	0	0.6291	1	12584	12584		35.618	5.3006	1				50883	211	35462	35514	56231	56231					-0.048302071540774705
MDQEEGLKAL	10	Unmodified	_MDQEEGLKAL_					0	0	0		ENST00000507780.1_1_4:81256922-81257812:+|nuORF;ENST00000502497.5_1_4:81256922-81711597:+|nuORF;nc|ENSG00000197826|Q6V702-3|CFAP299;ENST00000512931.5_1_4:81256922-81570142:+|nuORF;ENSG00000197826|ENST00000358105|CFAP299;nc|ENSG00000197826|Q6V702-1|CFAP299	ENST00000507780.1_1_4:81256922-81257812:+|nuORF	ENST00000507780.1_1_4:81256922-81257812:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.2767944335938	2	567.278989	1132.54342	0.29084	0.00016499	-4.4785	-0.0025405	-4.1876	-0.0023755	567.2761947349438	82.589	0.9938	82.408	82.07	83.064	-0.18079					50	22	3	0	0	0	1.0236	1	9955	9955		42.864	2.8061	1	842660			50884	15769	35463	35515	56232	56232					-0.01754545707831312
MDQFEAPR	8	Unmodified	_MDQFEAPR_					0	0	0			REV__AP4B1|p.C491F|1|0.31|ENSG00000134262|chr1:113896296-113896296|C/A|missense_variant	REV__AP4B1|p.C491F|1|0.31|ENSG00000134262|chr1:113896296-113896296|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2689514160156	2	497.226559	992.438566	-1.097	-0.00054548	2.3943	0.0011905	1.2973	0.00064504	497.22779318657825	35.921	1.1632	35.879	35.366	36.529	-0.042454					44	31	2	0	0	0	0.027866	1	2829	2829		42.396	6.7778	1	205600	+		50885	19151	35464	35516	56233	56233					-0.05795622393736721
MDQHSNIR	8	Unmodified	_MDQHSNIR_					0	0	0		ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2081604003906	2	500.735083	999.455613	-1.1454	-0.00057356	-0.15761	-7.8919E-05	-1.303	-0.00065248	500.73354134213	43.424	0.64281	43.198	42.912	43.555	-0.22597					50	17	4	0	0	0	0.027866	1	3923	3923		63.306	5.495	1	469980			50886	3787	35465	35517	56234	56234					-0.04413701787939317
MDQKDEELE	9	Unmodified	_MDQKDEELE_					0	0	0			REV__ENSG00000178965|ENST00000326665|ERICH3	REV__ENSG00000178965|ENST00000326665|ERICH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8109741210938	2	568.742436	1135.47032	-0.65262	-0.00037117	-0.62054	-0.00035293	-1.2732	-0.0007241	568.7415824104083	69.376	0.62579	69.108	68.784	69.41	-0.26724					33	14	4	0	0	0	0.024292	1	8067	8067		58.782	7.5893	1	280390	+		50887	27218	35466	35518	56235	56235					-0.09199719221101077
MDQQVPEW	8	Unmodified	_MDQQVPEW_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.8134765625	2	516.726392	1031.43823	-0.34109	-0.00017625	0.7759	0.00040093	0.43482	0.00022468	516.726876789188	66.193	0.35989	65.951	65.748	66.108	-0.24145					11	8	2	0	0	0	0.027866	1	7595	7595		27.882	0	1	66122	+		50888	27638	35467	35519	56236	56236					-0.07623042113596057
MDQRKGVV	8	Unmodified	_MDQRKGVV_					0	0	0			REV__ENSG00000217128|ENST00000510461|FNIP1	REV__ENSG00000217128|ENST00000510461|FNIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7538146972656	2	466.752744	931.490935	-0.41909	-0.00019561	0.34778	0.00016233	-0.071304	-3.3282E-05	466.75278515652496	37.577	0.55904	37.577	37.343	37.902	0					39	15	3	0	0	0	0.68164	1	3075	3075		68.787	1.2932	1	2602700	+		50889	28820	35468	35520	56237	56237					0.022449607398812077
MDQTLKALM	9	Unmodified	_MDQTLKALM_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-10|TPM1;ENST00000560975.5_1_15:63335715-63353895:+|nuORF	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7639770507812	2	525.769745	1049.52494	-0.95147	-0.00050025	-2.4508	-0.0012885	-3.4022	-0.0017888	525.7683466237007	78.96	0.78945	78.96	78.658	79.447	0					43	18	3	0	0	0	0.14181	1	9786	9786		101.25	19.012	1	768140			50890	18335	35469	35521	56238	56238					0.0021562111660387018
MDQTLKALM	9	Unmodified	_MDQTLKALM_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-10|TPM1;ENST00000560975.5_1_15:63335715-63353895:+|nuORF	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.7650756835938	2	525.769745	1049.52494	-0.62253	-0.00032731	-2.9983	-0.0015764	-3.6208	-0.0019037	525.7681358362789	79.087	0.70496	78.914	78.611	79.316	-0.17226					44	16	3	0	0	0	0.094442	2	9774	9774;9787		112.41	10.81	1	749880			50891	18335	35469	35521	56239;56240	56239					0.0021562111660387018
MDRCSSLPY	9	Unmodified	_MDRCSSLPY_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.23486328125	2	536.233527	1070.4525	0.38814	0.00020814	2.4818	0.0013308	2.87	0.001539	536.2346850396289	67.631	0.70683	67.376	67.033	67.74	-0.25517					29	16	2	0	0	0	0.31037	1	7779	7779		74.255	5.4682	1	1063100			50892	18765	35470	35522	56241	56241					-0.07990712956939205
MDRKVQTQ	8	Unmodified	_MDRKVQTQ_					0	0	0			REV__ENSG00000118855|ENST00000415822|MFSD1	REV__ENSG00000118855|ENST00000415822|MFSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.3081970214844	2	503.260933	1004.50731	-0.042417	-2.1347E-05	-1.053	-0.00052991	-1.0954	-0.00055126	503.2602130943464	42.747	0.50018	42.635	42.391	42.891	-0.11253					23	12	2	0	0	0	0.027866	1	3876	3876		54.776	5.3348	1	133760	+		50893	22426	35471	35523	56242	56242					0.005240419059759915
MDRKVQTQ	8	Unmodified	_MDRKVQTQ_					0	0	0			REV__ENSG00000118855|ENST00000415822|MFSD1	REV__ENSG00000118855|ENST00000415822|MFSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.3082580566406	2	503.260933	1004.50731	-0.38503	-0.00019377	-0.05935	-2.9868E-05	-0.44438	-0.00022364	503.26044661128924	42.941	0.53691	42.703	42.416	42.953	-0.23736					22	13	2	0	0	0	0.027866	1	3893	3893		63.306	0	1	151110	+		50894	22426	35471	35523	56243	56243					0.005240419059759915
MDRLDREEAF	10	Unmodified	_MDRLDREEAF_					0	0	0		ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2369689941406	3	427.867922	1280.58194	-1.4863	-0.00063596	1.3002	0.0005563	-0.18617	-7.9655E-05	427.8683756089738	29.766	0.8972	29.766	29.487	30.384	0					52	21	4	0	0	0	0.03519	1	1911	1911		33.922	8.8538	1	316680			50895	4508	35472	35524	56244	56244					-0.04713240073306224
MDRNVEMFM	9	Unmodified	_MDRNVEMFM_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000550519.5_1_12:56575573-56579941:-|nuORF;ENST00000550150.1_1_12:56578483-56578864:-|nuORF;SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF	SCAP-SMARCC1|1|fusion;SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7459716796875	2	586.748487	1171.48242	-0.42757	-0.00025088	-1.3917	-0.0008166	-1.8193	-0.0010675	586.7468653877306	61.527	1.1305	61.313	60.842	61.972	-0.21375					72	27	4	0	0	0	0.31247	1	6899	6899		73.975	22.639	1	2998000			50896	8376;5345	35473	35525	56245	56245					-0.09646097283280142
MDSATLNKKV	10	Unmodified	_MDSATLNKKV_					0	0	0			REV__ENST00000529871.1_1_11:104897559-104905036:-|nuORF	REV__ENST00000529871.1_1_11:104897559-104905036:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.3240966796875	2	553.797349	1105.58014	0.1477	8.1796E-05	0.042341	2.3448E-05	0.19004	0.00010524	553.797324668907	50.662	0.25653	50.482	50.353	50.61	-0.18071					11	6	2	0	0	0	0.03519	1	5164	5164		37.812	11.119	1	221930	+		50897	23778	35474	35526	56246	56246					0.03157750908735579
MDSDEIAKV	9	Unmodified	_MDSDEIAKV_					0	0	0			REV__ENST00000396653.2_1_2:224629896-224642420:-|nuORF	REV__ENST00000396653.2_1_2:224629896-224642420:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7601318359375	2	504.239332	1006.46411	-0.50519	-0.00025474	-1.7345	-0.00087463	-2.2397	-0.0011294	504.2393595178842	60.394	1.2243	60.394	59.846	61.07	0					75	32	4	0	0	0	0.024288	1	6875	6875		71.877	13.096	1	332660	+		50898	24810	35475	35527	56247	56247					-0.038861926619802034
MDSFPSHPQTP	11	Unmodified	_MDSFPSHPQTP_					0	0	0		nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2118835449219	3	415.185251	1242.53392	-0.40226	-0.00016701	-2.3125	-0.00096012	-2.7148	-0.0011271	415.18428789936377	29.041	0.16882	29.041	28.904	29.073	0					5	3	2	0	0	0	0.024801	1	1727	1727		17.833	7.2463	1	21764			50899	1643	35476	35528	56248	56248					-0.07764313993379801
MDSGHQSINL	10	Unmodified	_MDSGHQSINL_					0	0	0			REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2609252929688	2	551.253305	1100.49206	0.1474	8.1255E-05	3.531	0.0019465	3.6784	0.0020277	552.2545456449453	91.461	0.55853	91.322	91.147	91.706	-0.13942					26	12	3	0	0	0	0.03519	1	11224	11224		37.812	1.3648	1	136430	+		50900	24355	35477	35529	56249	56249					-0.054168696818805984
MDSPFIKQT	9	Unmodified	_MDSPFIKQT_					0	0	0			REV__ENSG00000165490|ENST00000533655|DDIAS	REV__ENSG00000165490|ENST00000533655|DDIAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8048095703125	2	533.765517	1065.51648	-1.1052	-0.00058994	1.201	0.00064107	0.095791	5.113E-05	533.765321827872	45.119	0.24666	44.97	44.901	45.148	-0.1488					10	6	2	0	0	0	0.024025	1	4365	4365		62.107	7.3311	1	114630	+		50901	25892	35478	35530	56250	56250					-0.013656095283522518
MDSPGIDVTT	10	Unmodified	_MDSPGIDVTT_					0	0	0		ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.23679	1034.45903	-0.20002	-0.00010366	-0.56468	-0.00029264	-0.7647	-0.0003963	518.236848859883	102.65	0.36998	102.65	102.46	102.83	-0.0046082					15	8	3	0	0	0	0.03519	1	13060	13060		101.6	0	1	97765			50902	3565	35479	35531	56251	56251					-0.05682496524582348
MDSRPIWV	8	Unmodified	_MDSRPIWV_					0	0	0			REV__ENST00000569173.5_2_15:72533824-72552901:-|nuORF	REV__ENST00000569173.5_2_15:72533824-72552901:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2861633300781	2	502.25512	1002.49569	-1.2333	-0.00061942	1.4141	0.00071024	0.18081	9.0813E-05	502.2554541019369	44.438	1.0534	44.293	44.099	45.152	-0.14471					48	30	2	0	0	0	0.027866	1	4348	4348		45.952	0	1	223340	+		50903	35366	35480	35532	56252	56252					-0.005461551173652879
MDSRVSSALDV	11	Unmodified	_MDSRVSSALDV_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.2890014648438	2	590.287345	1178.56014	-0.7743	-0.00045706	4.4465	0.0026247	3.6722	0.0021677	590.2894680500401	86.402	1.1525	86.402	85.789	86.941	0					57	26	5	0	0	0	0.87596	1	10859	10859		53.089	7.1167	1	596170	+		50904	21832	35481	35533	56253	56253					-0.022000448218932434
MDSRVSSALDV	11	Unmodified	_MDSRVSSALDV_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	590.287345	1178.56014	-0.7743	-0.00045706	4.4465	0.0026247	3.6722	0.0021677	590.2894680500401	86.402	1.1525	86.402	85.789	86.941	0	0.035512	-7.1351E-05	NaN	53.089	57	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596170	+		50905	21832	35481	35533							-0.022000448218932434
MDSRVSSALDV	11	Unmodified	_MDSRVSSALDV_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	590.287345	1178.56014	-0.9384	-0.00055393	5.0152	0.0029604	4.0768	0.0024065	590.2901110776721	86.385	0.69185	86.34	86.033	86.725	-0.045097	-0.027166	0.00060004	NaN	53.089	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	551400	+		50906	21832	35481	35533							-0.022000448218932434
MDSRVSSALDV	11	Unmodified	_MDSRVSSALDV_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	590.287345	1178.56014	-0.04177	-2.4657E-05	3.8924	0.0022976	3.8506	0.002273	590.289512268439	86.335	0.73309	86.359	86.072	86.806	0.023666	-0.0083462	-0.00072557	NaN	53.089	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586250	+		50907	21832	35481	35533							-0.022000448218932434
MDSYYPNRY	9	Unmodified	_MDSYYPNRY_					0	0	0		ENST00000490180.2_1_14:65198440-65203695:+|nuORF;nc|ENSG00000126822|A1L390-3|PLEKHG3;ENSG00000126822|ENST00000247226|PLEKHG3	ENST00000490180.2_1_14:65198440-65203695:+|nuORF	ENST00000490180.2_1_14:65198440-65203695:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5441589355469	3	403.506213	1207.49681	0.73141	0.00029513	3.3271	0.0013425	4.0585	0.0016376	403.5074043595216	24.927	0.65131	24.752	24.425	25.077	-0.17484					36	14	3	0	0	0	0.024484	1	1146	1146		23.523	0.94304	1	336800			50908	4217	35482	35534	56254	56254					-0.09863985539118403
MDTACVLIF	9	Unmodified	_MDTACVLIF_					0	0	0		ENSG00000102057|ENST00000218176|KCND1	ENSG00000102057|ENST00000218176|KCND1	ENSG00000102057|ENST00000218176|KCND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27313232421875	2	506.745739	1011.47692	-0.4407	-0.00022332	1.5508	0.00078585	1.1101	0.00056253	506.7459560886052	35.539	0.73223	35.583	35.305	36.037	0.04406					40	18	3	0	0	0	0.024354	1	2707	2707		47.916	12.715	1	490320			50909	2375	35483	35535	56255	56255					-0.02835452803424232
MDTSERKIN	9	Unmodified	_MDTSERKIN_					0	0	0		nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP;ENSG00000163798|ENST00000326019|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2757568359375	2	547.268955	1092.52336	-0.6994	-0.00038276	-0.28865	-0.00015797	-0.98805	-0.00054073	547.2688845551405	78.662	0.29385	78.662	78.531	78.825	0					8	6	2	0	0	0	0.024397	1	9735	9735		31.53	1.2121	1	27119			50910	18452	35484	35536	56256	56256					-0.019202966477905647
MDTSYLRW	8	Unmodified	_MDTSYLRW_					0	0	0			REV__ENSG00000117013|ENST00000347132|KCNQ4	REV__ENSG00000117013|ENST00000347132|KCNQ4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7732543945312	2	536.250034	1070.48552	-0.62745	-0.00033647	3.7278	0.001999	3.1004	0.0016626	536.2522958401332	42.252	1.2158	42.12	41.528	42.744	-0.1322					58	34	2	0	0	0	0.027866	1	3776	3776		27.882	0	1	218220	+		50911	22319	35485	35537	56257	56257					-0.04690762842596996
MDVATPSVH	9	Unmodified	_MDVATPSVH_					0	0	0		ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.8028259277344	2	478.728935	955.443317	-0.88155	-0.00042203	-2.762	-0.0013223	-3.6436	-0.0017443	478.7274939026289	51.759	0.87961	51.846	51.478	52.358	0.087006					41	23	2	0	0	0	0.024517	1	5515	5515		19.36	1.0356	1	430550			50912	17023	35486	35538	56258	56258					-0.03618738250986553
MDVATPSVH	9	Unmodified	_MDVATPSVH_					0	0	0		ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.728935	955.443317	0.63014	0.00030167	-4.0775	-0.001952	-3.4473	-0.0016503	478.72671908138415	51.832	0.89008	51.832	51.501	52.391	0	0.032711	-0.00057514	NaN	19.36	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369570			50913	17023	35486	35538							-0.03618738250986553
MDVATPSVH	9	Unmodified	_MDVATPSVH_					0	0	0		ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENST00000570209.1_1_15:31108772-31126588:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.728935	955.443317	-2.0191	-0.0009666	-6.6279	-0.003173	-8.647	-0.0041396	478.72589288386814	52.034	0.84515	51.765	51.548	52.393	-0.26904	-0.033504	-0.0030171	NaN	19.36	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153950			50914	17023	35486	35538							-0.03618738250986553
MDVHDTPD	8	Unmodified	_MDVHDTPD_					0	0	0		nc|ENSG00000196236|Q9NQH7-2|XPNPEP3;nc|ENSG00000196236|Q9NQH7-4|XPNPEP3;ENSG00000196236|ENST00000357137|XPNPEP3	nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.1871	928.359646	-0.22885	-0.00010646	-4.4037	-0.0020486	-4.6326	-0.002155	465.1852536572877	75.445	0.15147	75.2	75.077	75.229	-0.24455					5	3	2	0	0	0	0.027866	1	9209	9209		33.516	5.2613	1	41480			50915	9843	35487	35539	56259	56259					-0.10739894418691165
MDVLVSECS	9	Unmodified	_MDVLVSECS_					0	0	0		ENST00000524082.5_1_5:167913503-167919924:+|nuORF;ENST00000521939.5_1_5:167913503-167921691:+|nuORF;ENSG00000113643|ENST00000231572|RARS1	ENST00000524082.5_1_5:167913503-167919924:+|nuORF	ENST00000524082.5_1_5:167913503-167919924:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2767639160156	2	491.714636	981.414719	0.51803	0.00025472	-3.6642	-0.0018018	-3.1462	-0.001547	491.71268533142	40.841	1.7819	40.717	40.084	41.866	-0.12317					90	49	2	0	0	0	0.024263	1	3520	3520		34.173	0	1	473360			50916	3313	35488	35540	56260	56260					-0.07673223942424556
MDVPVYVHPPK	11	Unmodified	_MDVPVYVHPPK_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.78466796875	3	427.893519	1280.65873	-0.25284	-0.00010819	-2.1152	-0.00090507	-2.368	-0.0010133	427.8929325494867	26.824	0.37817	26.583	26.451	26.829	-0.24053					10	8	2	0	0	0	0.024801	1	1424	1424		12.957	0	1	20194	+		50917	23119	35489	35541	56261	56261					0.029626032138139635
MDVRLGPLSV	10	Unmodified	_MDVRLGPLSV_					0	0	0			REV__ENST00000303407.11_3_9:136896778-136897270:-|nuORF	REV__ENST00000303407.11_3_9:136896778-136897270:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8033447265625	2	543.802434	1085.59032	-0.84095	-0.00045731	0.36138	0.00019652	-0.47958	-0.00026079	543.8024217066045	56.828	1.1808	56.828	56.351	57.532	0					87	32	4	0	0	0	0.69662	1	6389	6389		67.494	6.5217	1	10205000	+		50918	30094	35490	35542	56262	56262					0.05094358633959928
MDVRLGPLSV	10	Unmodified	_MDVRLGPLSV_					0	0	0			REV__ENST00000303407.11_3_9:136896778-136897270:-|nuORF	REV__ENST00000303407.11_3_9:136896778-136897270:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8021240234375	2	543.802434	1085.59032	-0.79178	-0.00043057	-0.055262	-3.0052E-05	-0.84704	-0.00046062	543.802360796175	56.983	1.1587	56.819	56.423	57.582	-0.16432					67	31	3	0	0	0	0.80817	1	6334	6334		60.118	5.3419	1	8991000	+		50919	30094	35490	35542	56263	56263					0.05094358633959928
MDVRRGGL	8	Unmodified	_MDVRRGGL_					0	0	0		ENST00000550106.5_1_12:95611896-95612004:+|nuORF	ENST00000550106.5_1_12:95611896-95612004:+|nuORF	ENST00000550106.5_1_12:95611896-95612004:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2540588378906	2	452.245086	902.47562	0.041947	1.897E-05	2.8858	0.0013051	2.9278	0.0013241	452.2459076715617	36.683	0.27999	36.62	36.548	36.828	-0.063385					12	6	2	0	0	0	0.027866	1	2921	2921		18.324	0	1	80435			50920	16574	35491	35543	56264	56264					0.02048093942687501
MDVVFLIDN	9	Unmodified	_MDVVFLIDN_					0	0	0		nc|ENSG00000172752|A8TX70|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7879638671875	2	533.267893	1064.52123	-1.1361	-0.00060587	1.7103	0.00091204	0.57414	0.00030617	533.2682818005545	45.852	0.21842	45.65	45.563	45.781	-0.20226					9	5	3	0	0	0	0.024017	1	4359	4359		75.043	25.602	1	168630			50921	8301	35492	35544	56265	56265					-0.008447253855820236
MDVVISQQT	9	Unmodified	_MDVVISQQT_					0	0	0			REV__ENSG00000175595|ENST00000311895|ERCC4	REV__ENSG00000175595|ENST00000311895|ERCC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.79608154296875	2	510.755149	1019.49575	-0.55066	-0.00028125	0.33042	0.00016877	-0.22024	-0.00011249	510.7543849070984	61.501	1.643	61.501	60.437	62.08	0					57	43	2	0	0	0	0.02435	1	7169	7169		34.173	5.023	1	285200	+		50922	26962	35493	35545	56266	56266					-0.013221999080201385
MDYIVFPS	8	Unmodified	_MDYIVFPS_					0	0	0			REV__ENSG00000132170|ENST00000651735|PPARG	REV__ENSG00000132170|ENST00000651735|PPARG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2615966796875	2	486.230779	970.447005	-1.5015	-0.00073008	-3.3006	-0.0016049	-4.8021	-0.0023349	486.22915449724576	39	1.2092	39.024	38.426	39.635	0.023727					47	32	2	0	0	0	0.027866	1	3162	3162		40.573	0	1	212080	+		50923	23258	35494	35546	56267	56267					-0.039400684771294436
MDYLWEINQE	10	Unmodified	_MDYLWEINQE_					0	0	0		ENSG00000204450|ENST00000533122|TRIM64;ENSG00000189253|ENST00000329862|TRIM64B	ENSG00000204450|ENST00000533122|TRIM64	ENSG00000204450|ENST00000533122|TRIM64	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	446.74957275390625	3	447.532427	1339.57545	-0.22928	-0.00010261	2.3702	0.0010608	2.141	0.00095815	447.5327727007061	31.216	0.35434	30.975	30.794	31.149	-0.24109					13	8	2	0	0	0	0.03519	1	2045	2045		20.837	2.3061	1	58736			50924	9800	35495	35547	56268	56268					-0.08075178024705565
MDYYTLPE	8	Unmodified	_MDYYTLPE_					0	0	0			REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	REV__ENST00000497235.5_1_1:113125066-113140698:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.77490234375	2	516.223151	1030.43175	-1.058	-0.00054619	-1.4705	-0.00075909	-2.5285	-0.0013053	516.2218949845504	68.844	0.44804	68.582	68.341	68.789	-0.26165					18	10	3	0	0	0	0.027866	1	7985	7985		26.796	0	1	123780	+		50925	19787	35496	35548	56269	56269					-0.08224980064960619
MEAEDHCRM	9	Unmodified	_MEAEDHCRM_					0	0	0		ENSG00000173581|ENST00000586790|CCDC106	ENSG00000173581|ENST00000586790|CCDC106	ENSG00000173581|ENST00000586790|CCDC106	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2796020507812	2	561.212269	1120.40998	0.56926	0.00031948	-3.0662	-0.0017208	-2.497	-0.0014013	561.2096911021083	85.018	0.2894	85.018	84.792	85.082	0					8	6	2	0	0	0	0.024484	1	10640	10640		45.972	7.1661	1	42900			50926	8387	35497	35549	56270	56270					-0.145404313568406
MEAEGDSA	8	Oxidation (M)	_M(Oxidation (M))EAEGDSA_		M(1)EAEGDSA		M(42)EAEGDSA	0	0	1		ENST00000530238.5_1_11:66105966-66109705:-|nuORF;ENST00000525127.1_1_11:66108392-66109705:-|nuORF;ENST00000534617.5_1_11:66108392-66109705:-|nuORF;ENSG00000174744|ENST00000359957|BRMS1	ENST00000530238.5_1_11:66105966-66109705:-|nuORF	ENST00000530238.5_1_11:66105966-66109705:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.1510314941406	2	413.150183	824.285813	0.30815	0.00012731	1.1443	0.00047277	1.4525	0.00060009	413.1508417125863	81.516	0.96786	81.287	80.98	81.948	-0.2289					61	22	4	0	0	0	0.96719	1	9800	9800		42.474	8.9589	1	1506100			50927	16227	35498	35550	56271	56271		533			-0.13335862581004676
MEAEGEWEE	9	Unmodified	_MEAEGEWEE_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7845458984375	2	555.208229	1108.40191	0.18968	0.00010531	3.3758	0.0018743	3.5655	0.0019796	555.2099423588418	69.319	0.29029	69.073	68.871	69.161	-0.24554					9	6	2	0	0	0	0.024506	1	8032	8032		23.042	0	1	56358			50928	18249	35499	35551	56272	56272					-0.1479596380095245
MEAGIHYVE	9	Unmodified	_MEAGIHYVE_					0	0	0		nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2777099609375	2	524.742042	1047.46953	0.1908	0.00010012	-2.8223	-0.001481	-2.6315	-0.0013808	524.7403783918608	56.407	0.87571	56.19	55.668	56.543	-0.21607					49	22	3	0	0	0	0.024436	1	6154	6154		47.916	1.9636	1	594070			50929	18145	35500	35552	56273	56273					-0.0523046907949265
MEAGIHYVE	9	Unmodified	_MEAGIHYVE_					0	0	0		nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.742042	1047.46953	-0.48789	-0.00025602	-0.17468	-9.166E-05	-0.66257	-0.00034768	524.741829391413	55.852	0.92639	55.852	55.645	56.571	0	-0.13844	0.00098718	NaN	35.618	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320920			50930	18145	35500	35552							-0.0523046907949265
MEAGIHYVE	9	Unmodified	_MEAGIHYVE_					0	0	0		nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.742042	1047.46953	-0.37297	-0.00019571	0.41643	0.00021852	0.043465	2.2808E-05	524.7420065750356	55.934	0.72935	55.777	55.554	56.284	-0.15601	-0.21307	0.0016075	NaN	35.618	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263050			50931	18145	35500	35552							-0.0523046907949265
MEAGIHYVE	9	Unmodified	_MEAGIHYVE_					0	0	0		nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.742042	1047.46953	-0.82546	-0.00043315	0.62288	0.00032685	-0.20257	-0.0001063	524.7423212895625	55.592	0.62011	55.69	55.447	56.067	0.098015	-0.30093	0.0018242	NaN	35.618	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323870			50932	18145	35500	35552							-0.0523046907949265
MEAGVCFLW	9	Unmodified	_MEAGVCFLW_					0	0	0		ENST00000439068.6_1_7:112127019-112127052:+|nuORF	ENST00000439068.6_1_7:112127019-112127052:+|nuORF	ENST00000439068.6_1_7:112127019-112127052:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2360229492188	2	528.238081	1054.46161	-0.020921	-1.1051E-05	2.3002	0.001215	2.2793	0.001204	528.2391109941838	68.01	3.4665	67.776	66.732	70.199	-0.23376					176	84	3	0	0	0	0.67308	1	7807	7807		47.916	5.4411	1	2233000			50933	14322	35501	35553	56274	56274					-0.06344319600634662
MEAIRNRPV	9	Unmodified	_MEAIRNRPV_					0	0	0			REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7970581054688	2	543.29785	1084.58115	-0.11243	-6.1082E-05	-1.4837	-0.00080608	-1.5961	-0.00086716	543.296507948977	71.882	0.4355	71.607	71.394	71.829	-0.27509					14	10	2	0	0	0	0.024427	1	8428	8428		34.173	3.6689	1	383100	+		50934	21102	35502	35554	56275	56275					0.04224010068287498
MEAKESSWPG	10	Unmodified	_MEAKESSWPG_					0	0	0			REV__ENSG00000268043|ENST00000698835|NBPF12;REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2796020507812	2	561.250231	1120.48591	0.61256	0.0003438	-1.6135	-0.00090555	-1.0009	-0.00056175	561.249318179639	84.979	0.41362	84.979	84.792	85.206	0					10	9	2	0	0	0	0.03519	1	10640	10640		56.721	8.8055	1	127650	+		50935	29130;29159	35503	35555	56276	56276					-0.06951387913409235
MEAKKIAFI	9	Unmodified	_MEAKKIAFI_					0	0	0			REV__ENSG00000137221|ENST00000372449|TJAP1	REV__ENSG00000137221|ENST00000372449|TJAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.8027954101562	2	525.804445	1049.59434	0.37671	0.00019808	-4.1463	-0.0021801	-3.7696	-0.0019821	525.802385848111	101.72	1.529	101.71	101.06	102.59	-0.0054474					86	34	5	0	0	0	0.32811	1	12953	12953		71.877	3.3928	1	2156700	+		50936	23738	35504	35556	56277	56277					0.07152448127681055
MEALLMVLN	9	Oxidation (M)	_MEALLM(Oxidation (M))VLN_		MEALLM(1)VLN		M(-57)EALLM(57)VLN	0	0	1			REV__ENSG00000143815|ENST00000272163|LBR	REV__ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2716064453125	2	525.272121	1048.52969	-0.75464	-0.00039639	0.4166	0.00021883	-0.33804	-0.00017756	525.2727365115217	39.498	1.4384	39.521	38.688	40.126	0.023727					61	39	2	0	0	0	0.20967	1	3360	3360		87.754	12.711	2	7867400	+		50937	24286	35505	35557	56278	56278		721			0.007365052593740984
MEALRGVVL	9	Unmodified	_MEALRGVVL_					0	0	0		ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2854309082031	2	494.28642	986.558287	0.4522	0.00022352	-0.48086	-0.00023768	-0.028657	-1.4165E-05	494.28603033614456	51.467	1.0551	51.467	51.143	52.198	0					87	29	4	0	0	0	0.39228	1	5458	5458		66.429	7.6473	1	3656300			50938	14931	35506	35558	56279	56279					0.0644699095081478
MEAREKMAN	9	Unmodified	_MEAREKMAN_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;ENST00000471025.1_1_3:39170643-39171861:+|nuORF	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7633666992188	2	540.252251	1078.48995	-1.5213	-0.0008219	-0.77052	-0.00041628	-2.2918	-0.0012382	540.2513153029458	34.384	1.1124	34.434	33.726	34.838	0.050255					60	27	3	0	0	0	0.0242	1	2465	2465		69.628	25.511	1	1126700			50939	7772	35507	35559	56280	56280					-0.0461562169134595
MEAREKMAN	9	Unmodified	_MEAREKMAN_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;ENST00000471025.1_1_3:39170643-39171861:+|nuORF	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.252251	1078.48995	-1.3717	-0.00074105	-3.0856	-0.001667	-4.4573	-0.0024081	540.2507503100971	34.767	0.28036	34.58	34.479	34.76	-0.18675	0.008048	-0.00085302	NaN	51.193	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75071			50940	7772	35507	35559							-0.0461562169134595
MEARVVGT	8	Unmodified	_MEARVVGT_					0	0	0			REV__ENST00000369314.1_1_1:145456307-145456520:-|nuORF	REV__ENST00000369314.1_1_1:145456307-145456520:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	431.7249450683594	2	431.726195	861.437837	0.38484	0.00016614	-3.6222	-0.0015638	-3.2374	-0.0013977	431.72450220023586	36.247	0.97649	36.031	35.713	36.689	-0.21661					51	25	3	0	0	0	0.50717	1	2844	2844		84.916	8.0689	1	3891700	+		50941	31083	35508	35560	56281	56281					0.0015758295720615934
MEATARTKTE	10	Unmodified	_MEATARTKTE_					0	0	0		ENST00000402983.5_1_1:109202572-109203629:-|nuORF;ENST00000493676.1_1_1:109197361-109203629:-|nuORF	ENST00000402983.5_1_1:109202572-109203629:-|nuORF	ENST00000402983.5_1_1:109202572-109203629:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2684326171875	2	569.282063	1136.54957	0.044075	2.5091E-05	-0.063622	-3.6219E-05	-0.019547	-1.1128E-05	569.281868345653	62.872	0.72976	62.651	62.489	63.219	-0.22097					40	18	3	0	0	0	0.31896	1	7074	7074		107.01	10.817	1	1854400			50942	13692	35509	35561	56282	56282					-0.013240274763120397
MEAWVSLDP	9	Unmodified	_MEAWVSLDP_					0	0	0			REV__ENSG00000164062|ENST00000296456|APEH	REV__ENSG00000164062|ENST00000296456|APEH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3137817382812	2	524.244418	1046.47428	-0.07806	-4.0922E-05	-0.73666	-0.00038619	-0.81472	-0.00042711	524.744726746117	73.137	0.74197	73.147	72.777	73.519	0.0096512					28	18	2	0	0	0	0.024436	1	8865	8865		38.806	23.164	1	503010	+		50943	25682	35510	35562	56283	56283					-0.04709584936745159
MECFNPPNLM	10	Unmodified	_MECFNPPNLM_					0	0	0			REV__ENSG00000124107|ENST00000338380|SLPI	REV__ENSG00000124107|ENST00000338380|SLPI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	598.8187866210938	2	598.250862	1194.48717	0.15713	9.4005E-05	-2.7835	-0.0016653	-2.6264	-0.0015712	598.2492082605373	74.465	0.46112	74.465	74.215	74.676	0					19	10	3	0	0	0	0.03519	1	9079	9079		34.173	1.3601	1	68652	+		50944	22730	35511	35563	56284	56284					-0.10229213140519278
MECLRMTDE	9	Unmodified	_MECLRMTDE_					0	0	0		nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15;nc|ENSG00000163808|Q9NS87-3|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.2998046875	2	564.230127	1126.4457	-0.1548	-8.7343E-05	-2.6496	-0.001495	-2.8044	-0.0015824	564.2283230852404	74.798	0.65361	74.539	74.409	75.063	-0.25887					26	15	2	0	0	0	0.024181	1	9107	9107		72.879	0	1	64507			50945	7147	35512	35564	56285	56285					-0.11246393899841678
MECLRMTDE	9	Unmodified	_MECLRMTDE_					0	0	0		nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15;nc|ENSG00000163808|Q9NS87-3|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.2996215820312	2	564.230127	1126.4457	-0.81158	-0.00045792	-2.227	-0.0012565	-3.0386	-0.0017145	564.2287877953374	74.66	0.81354	74.669	74.397	75.21	0.0096512					32	19	2	0	0	0	0.024181	1	9056	9056		63.534	12.198	1	96501			50946	7147	35512	35564	56286	56286					-0.11246393899841678
MECSRQLRA	9	Unmodified	_MECSRQLRA_					0	0	0			REV__DPPA2|p.Y163C|1|0.21|ENSG00000163530|chr3:109308202-109308202|T/C|missense_variant	REV__DPPA2|p.Y163C|1|0.21|ENSG00000163530|chr3:109308202-109308202|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2755737304688	2	547.265693	1092.51683	-0.72697	-0.00039784	2.7384	0.0014986	2.0114	0.0011008	547.2667320361821	72.931	0.53963	72.931	72.454	72.994	0					16	12	2	0	0	0	0.024205	1	8882	8882		63.306	0	1	282880	+		50947	19705	35513	35565	56287	56287					-0.025725130801674823
MEDAFAVPV	9	Unmodified	_MEDAFAVPV_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2519836425781	2	489.733686	977.452819	-0.28457	-0.00013937	3.3921	0.0016612	3.1075	0.0015219	489.7353924107761	73.709	0.57083	73.438	72.967	73.538	-0.27126					18	14	2	0	0	0	0.024436	1	8972	8972		38.806	8.3025	1	107650	+		50948	23527	35514	35566	56288	56288					-0.036809699654554606
MEDGLEGMMF	10	Oxidation (M)	_MEDGLEGMM(Oxidation (M))F_		MEDGLEGM(0.031)M(0.969)F		M(-43)EDGLEGM(-15)M(15)F	0	0	1		ENSG00000133119|ENST00000380071|RFC3	ENSG00000133119|ENST00000380071|RFC3	ENSG00000133119|ENST00000380071|RFC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	588.2230224609375	2	588.22451	1174.43447	-0.94254	-0.00055443	-1.8693	-0.0010996	-2.8119	-0.001654	588.2232007396209	84.68	0.90655	84.68	84.341	85.247	0					60	21	4	0	0	0	1.0142	1	10601	10601		44.117	7.67	3	1898700			50949	4687	35515	35567	56289	56289		186			-0.1457721599397246
MEDGQMEVV	9	Unmodified	_MEDGQMEVV_					0	0	0			REV__ENST00000481557.1_1_2:209116152-209118617:-|nuORF	REV__ENST00000481557.1_1_2:209116152-209118617:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.801025390625	2	519.217543	1036.42053	-0.54849	-0.00028479	0.62808	0.00032611	0.079592	4.1326E-05	519.2178304727838	52.231	0.37868	52.231	52.012	52.391	0					13	9	2	0	0	0	0.024436	1	5564	5564		38.806	12.113	1	199150	+		50950	23853	35516	35568	56290	56290					-0.09622125430769302
MEDLVTYTK	9	Unmodified	_MEDLVTYTK_					0	0	0		nc|ENSG00000035403|P18206-2|VCL;ENSG00000035403|ENST00000211998|VCL;VCL-ADK|2|fusion;nc|ENSG00000035403|P18206-3|VCL;VCL-ADK|1|fusion;VCL-ADK|4|fusion;VCL-ADK|13|fusion;VCL-ADK|12|fusion;VCL-ADK|3|fusion	nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|1|fusion	VCL-ADK|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2688598632812	2	550.270632	1098.52671	0.096552	5.313E-05	-3.0745	-0.0016918	-2.9779	-0.0016387	550.2688929435121	80.381	1.4326	80.143	79.747	81.179	-0.23783					104	34	5	0	0	0	0.2508	1	9651	9651		82.241	7.1972	1	6856400			50951	1030;38140	35517	35569	56291	56291					-0.018610465937854315
MEDTRNVGH	9	Unmodified	_MEDTRNVGH_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8158569335938	2	529.737822	1057.46109	0.66012	0.00034969	0.07304	3.8692E-05	0.73316	0.00038838	529.737266706285	67.855	0.74622	67.599	67.323	68.069	-0.25516					34	17	3	0	0	0	0.02435	1	7883	7883		51.335	0	1	484020	+		50952	22372	35518	35570	56292	56292					-0.06534022996106614
MEEASSCSFE	10	Unmodified	_MEEASSCSFE_					0	0	0			REV__ENSG00000145911|ENST00000274605|N4BP3	REV__ENSG00000145911|ENST00000274605|N4BP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.272216796875	2	560.202089	1118.38963	-0.34131	-0.0001912	-3.8815	-0.0021745	-4.2229	-0.0023657	560.2003732385753	93.266	0.21057	93.273	93.14	93.35	0.0077209					8	4	2	0	0	0	0.03519	1	11749	11749		79.451	52.758	1	35734	+		50953	24444	35519	35571	56293	56293					-0.164833235356582
MEEDFMKPVIS	11	Unmodified	_MEEDFMKPVIS_					0	0	0		ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.893310546875	3	442.542047	1324.60431	-0.17008	-7.5268E-05	-1.7928	-0.00079339	-1.9629	-0.00086866	442.54118535104163	35.071	0.49931	34.885	34.681	35.18	-0.18675					22	12	2	0	0	0	0.024789	1	2597	2597		15.921	0	1	198640			50954	3853	35520	35572	56294	56294					-0.045007767198967485
MEEEEEDVLAG	11	Unmodified	_MEEEEEDVLAG_					0	0	0		ENSG00000008382|ENST00000599840|MPND;nc|ENSG00000008382|Q8N594|MPND;nc|ENSG00000008382|Q8N594-2|MPND	ENSG00000008382|ENST00000599840|MPND	ENSG00000008382|ENST00000599840|MPND	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	625.7576904296875	2	625.758283	1249.50201	-0.20897	-0.00013077	-1.7544	-0.0010978	-1.9633	-0.0012286	625.756955171804	66.536	0.53023	66.287	65.981	66.511	-0.24839					36	14	4	0	0	0	0.69247	2	7642	7631;7642		64.207	3.2353	1	2137900			50955	845	35521	35573	56295;56296	56296					-0.112757712578059
MEEEEEDVLAG	11	Unmodified	_MEEEEEDVLAG_					0	0	0		ENSG00000008382|ENST00000599840|MPND;nc|ENSG00000008382|Q8N594|MPND;nc|ENSG00000008382|Q8N594-2|MPND	ENSG00000008382|ENST00000599840|MPND	ENSG00000008382|ENST00000599840|MPND	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	625.7578125	2	625.758283	1249.50201	-1.4129	-0.00088416	-0.75591	-0.00047302	-2.1688	-0.0013572	625.757812292474	66.526	0.4881	66.303	66.026	66.514	-0.22374					38	12	4	0	0	0	0.56861	1	7640	7640		71.877	0.58177	1	2352000			50956	845	35521	35573	56297	56297					-0.112757712578059
MEEEKHSQ	8	Unmodified	_MEEEKHSQ_					0	0	0			REV__nc|ENSG00000136100|Q86VN1-2|VPS36	REV__nc|ENSG00000136100|Q86VN1-2|VPS36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.27734375	2	509.218931	1016.42331	-0.5095	-0.00025945	-2.9967	-0.001526	-3.5062	-0.0017854	509.2173830247441	34.236	0.43606	34.236	33.972	34.408	0					24	10	3	0	0	0	0.027866	1	2532	2532		45.972	0	1	236150	+		50957	23625	35522	35574	56298	56298					-0.08424533981587956
MEEFFPETY	9	Unmodified	_MEEFFPETY_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.3592529296875	2	596.74699	1191.47943	0.26562	0.00015851	-2.8817	-0.0017197	-2.6161	-0.0015611	596.7453162107157	98.563	0.40282	98.426	98.233	98.636	-0.13625					13	8	2	0	0	0	0.02435	1	12223	12223		51.335	41.63	1	46029			50958	6953	35523	35575	56299	56299					-0.10865325864756414
MEEFFPETY	9	Unmodified	_MEEFFPETY_					0	0	0		nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10;ENSG00000162571|ENST00000379289|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.359375	2	596.74699	1191.47943	0.54829	0.00032719	-3.8423	-0.0022929	-3.294	-0.0019657	596.745129637834	98.487	0.47064	98.363	98.241	98.711	-0.12413					12	10	2	0	0	0	0.024457	1	12214	12214		37.159	6.8414	1	64036			50959	6953	35523	35575	56300	56300					-0.10865325864756414
MEEFPVNLH	9	Unmodified	_MEEFPVNLH_					0	0	0		ENST00000379644.8_2_8:43033309-43037375:+|nuORF	ENST00000379644.8_2_8:43033309-43037375:+|nuORF	ENST00000379644.8_2_8:43033309-43037375:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.322265625	2	558.263142	1114.51173	-0.52523	-0.00029322	-4.3853	-0.0024482	-4.9105	-0.0027414	558.2610516196137	28.701	0.26115	28.532	28.424	28.685	-0.16897					8	5	2	0	0	0	0.024506	1	1711	1711		30.504	4.9296	1	42630			50960	13277	35524	35576	56301	56301					-0.04094493671118471
MEEFPVNLH	9	Unmodified	_MEEFPVNLH_					0	0	0		ENST00000379644.8_2_8:43033309-43037375:+|nuORF	ENST00000379644.8_2_8:43033309-43037375:+|nuORF	ENST00000379644.8_2_8:43033309-43037375:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.263142	1114.51173	-1.5251	-0.00085138	-1.8854	-0.0010525	-3.4105	-0.0019039	558.2617582256668	28.865	0.3873	28.619	28.322	28.709	-0.24524	0.043853	0.0014733	NaN	37.159	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26277			50961	13277	35524	35576							-0.04094493671118471
MEEGRERN	8	Unmodified	_MEEGRERN_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7895812988281	2	510.729997	1019.44544	-0.9828	-0.00050195	4.4569	0.0022763	3.4741	0.0017743	510.73275127906595	85.53	0.41039	85.556	85.41	85.821	0.025536					14	9	2	0	0	0	0.027866	1	10684	10684		31.955	3.7006	1	190170			50962	13698	35525	35577	56302	56302					-0.06350309513175034
MEEHKFPEG	9	Unmodified	_MEEHKFPEG_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7806396484375	2	552.244949	1102.47534	-0.78191	-0.00043181	0.40485	0.00022358	-0.37706	-0.00020823	552.7467978918436	45.905	0.89978	45.703	44.919	45.819	-0.20226					42	25	2	0	0	0	0.024319	1	4321	4321		39.253	0	1	676860	+		50963	21318	35526	35578	56303	56303					-0.07179370567837395
MEEITNPLQ	9	Oxidation (M)	_M(Oxidation (M))EEITNPLQ_		M(1)EEITNPLQ		M(69)EEITNPLQ	0	0	1		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.7587280273438	2	545.757889	1089.50123	-0.88955	-0.00048548	1.9425	0.0010601	1.053	0.00057466	545.7588859011347	25.937	0.8472	25.701	25.384	26.232	-0.23603					45	22	4	0	0	0	0.35646	1	1273	1273		68.787	10.005	1	2750200			50964	1335	35527	35579	56304	56304		39			-0.03994521116214855
MEEITNPLQ	9	Oxidation (M)	_M(Oxidation (M))EEITNPLQ_		M(1)EEITNPLQ		M(63)EEITNPLQ	0	0	1		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.7582397460938	2	545.757889	1089.50123	-1.2454	-0.00067968	2.2909	0.0012503	1.0455	0.00057061	545.7590736566096	25.799	0.94331	25.628	25.282	26.226	-0.17151					47	25	4	0	0	0	0.43973	1	1241	1241		63.306	8.53	1	2370300			50965	1335	35527	35579	56305	56305		39			-0.03994521116214855
MEEKPLKVKGK	11	Unmodified	_MEEKPLKVKGK_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.76300048828125	3	429.588207	1285.74279	0.17882	7.6819E-05	-2.7233	-0.0011699	-2.5445	-0.0010931	429.58699434994895	61.334	0.7606	61.334	61.108	61.868	0					46	19	3	0	0	0	0.02473	1	7108	7108		26.75	0	1	611280			50966	1512	35528	35580	56306	56306					0.11135134310688954
MEEKQILCV	9	Unmodified	_MEEKQILCV_					0	0	0		ENST00000490823.5_1_2:27309995-27310821:+|nuORF;nc|ENSG00000138030|P50053-2|KHK;ENSG00000138030|ENST00000260598|KHK	ENST00000490823.5_1_2:27309995-27310821:+|nuORF	ENST00000490823.5_1_2:27309995-27310821:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.7787475585938	2	546.775028	1091.5355	-0.51386	-0.00028097	0.52984	0.0002897	0.015972	8.733E-06	546.7752427870461	76.733	0.88537	76.747	76.053	76.939	0.013496					31	21	2	0	0	0	0.39228	1	9374	9374		66.429	0	1	400120			50967	5191	35529	35581	56307	56307					-0.0066039622895459615
MEEKRKEKM	9	Unmodified	_MEEKRKEKM_					0	0	0			REV__ENST00000442697.6_1_4:100826835-100827738:-|nuORF	REV__ENST00000442697.6_1_4:100826835-100827738:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5537414550781	3	403.542381	1207.60531	-0.19122	-7.7165E-05	-2.363	-0.00095356	-2.5542	-0.0010307	403.54145937315667	29.622	0.25452	29.377	29.185	29.44	-0.24524					7	5	2	0	0	0	0.024367	1	1808	1808		22.58	0	1	39393	+		50968	32566	35530	35582	56308	56308					0.009814824396471522
MEEKRKEKM	9	Unmodified	_MEEKRKEKM_					0	0	0			REV__ENST00000442697.6_1_4:100826835-100827738:-|nuORF	REV__ENST00000442697.6_1_4:100826835-100827738:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5534973144531	3	403.542381	1207.60531	-0.4282	-0.0001728	-1.3371	-0.00053957	-1.7653	-0.00071237	403.54141420815773	29.506	0.246	29.356	29.213	29.459	-0.14952					8	5	2	0	0	0	0.024313	1	1786	1786		60.118	23.672	1	45503	+		50969	32566	35530	35582	56309	56309					0.009814824396471522
MEELDPPQP	9	Unmodified	_MEELDPPQP_					0	0	0		ENST00000374259.7_1_X:70316824-70320625:+|nuORF	ENST00000374259.7_1_X:70316824-70320625:+|nuORF	ENST00000374259.7_1_X:70316824-70320625:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3248291015625	2	528.239332	1054.46411	-0.041981	-2.2176E-05	-0.1639	-8.6576E-05	-0.20588	-0.00010875	528.2390896995443	65.943	1.3457	65.973	64.921	66.267	0.030106					59	36	2	0	0	0	0.024294	1	7787	7787		55.504	0	1	503890			50970	13105	35531	35583	56310	56310					-0.060941926619761944
MEELEITVN	9	Unmodified	_MEELEITVN_					0	0	0		nc|ENSG00000145734|A6H8Y1-8|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1;nc|ENSG00000145734|A6H8Y1-2|BDP1	nc|ENSG00000145734|A6H8Y1-8|BDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.8028564453125	2	539.260265	1076.50598	-0.86709	-0.00046759	-2.4446	-0.0013183	-3.3117	-0.0017859	539.2589344903649	93.399	0.43691	93.255	93.133	93.57	-0.1441					14	9	2	0	0	0	0.023596	1	11518	11518		63.306	0	1	54180			50971	18359;5833	35532	35584	56311	56311					-0.029216369734513137
MEELVRPTY	9	Unmodified	_MEELVRPTY_					0	0	0			REV__nc|ENSG00000104863|Q9HAP6-2|LIN7B	REV__nc|ENSG00000104863|Q9HAP6-2|LIN7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2672119140625	2	569.284074	1136.5536	0.033849	1.927E-05	-3.5257	-0.0020071	-3.4918	-0.0019879	569.2819136762392	63.045	1.1146	62.786	62.56	63.675	-0.25824					47	29	2	0	0	0	0.067814	1	7079	7079		122.18	20.575	1	1840900	+		50972	21473	35533	35585	56312	56312					-0.009219379825935903
MEENKEEVE	9	Unmodified	_MEENKEEVE_					0	0	0		ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8114013671875	2	568.742436	1135.47032	0.30597	0.00017402	-2.4153	-0.0013737	-2.1094	-0.0011997	568.740985638456	69.315	0.49444	69.071	68.787	69.282	-0.24488					22	11	3	0	0	0	0.024292	1	8056	8056		49.442	16.629	1	325940			50973	8360	35534	35586	56313	56313					-0.09199719221101077
MEEPPLLP	8	Unmodified	_MEEPPLLP_					0	0	0		ENSG00000087053|ENST00000346299|MTMR2;nc|ENSG00000087053|Q13614-2|MTMR2;ENST00000485740.5_1_11:95598759-95621397:-|nuORF	ENSG00000087053|ENST00000346299|MTMR2	ENSG00000087053|ENST00000346299|MTMR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.73724365234375	2	463.238604	924.462655	-0.45089	-0.00020887	0.96003	0.00044472	0.50914	0.00023585	463.23893146104	72.93	0.74992	72.732	72.289	73.039	-0.19811					21	17	2	0	0	0	0.027866	1	8557	8557		26.796	2.5934	1	209860			50974	1830	35535	35587	56314	56314					-0.002597819600623552
MEEQFKEV	8	Unmodified	_MEEQFKEV_					0	0	0			REV__ENSG00000213380|ENST00000306875|COG8	REV__ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2420654296875	2	520.241875	1038.4692	-1.1357	-0.00059085	1.5194	0.00079045	0.38368	0.0001996	520.2424014032068	86.068	1.0278	86.092	85.778	86.806	0.023666					49	23	3	0	0	0	0.42912	1	10730	10730		93.195	2.8256	1	800040	+		50975	28735	35536	35588	56315	56315					-0.04849888799344626
MEEQNLPAR	9	Unmodified	_MEEQNLPAR_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8223876953125	2	544.263673	1086.51279	0.79649	0.0004335	4.3688	0.0023778	5.1653	0.0028113	544.2653010367189	63.452	0.53524	63.506	63.267	63.803	0.054104					29	14	3	0	0	0	0.024021	1	7349	7349		58.782	0	1	294660	+		50976	28659	35537	35589	56316	56316					-0.02700279302234776
MEERNNDKY	9	Unmodified	_MEERNNDKY_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	599.8043823242188	2	599.761494	1197.50844	0.25143	0.0001508	0.23916	0.00014344	0.49059	0.00029424	599.7614751137213	68.303	0.32208	68.073	67.794	68.116	-0.23048					10	7	2	0	0	0	0.024515	1	7849	7849		27.882	0	1	130180	+		50977	23460	35538	35590	56317	56317					-0.0824178851578381
MEEVWKKK	8	Unmodified	_MEEVWKKK_					0	0	0			REV__ENSG00000130119|ENST00000360845|GNL3L	REV__ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.8032836914062	2	539.291702	1076.56885	-1.7324	-0.00093426	1.3371	0.00072106	-0.39532	-0.0002132	539.7925764466469	93.171	0.78478	93.031	92.7	93.484	-0.13995					44	17	4	0	0	0	0.027866	1	11512	11512		42.474	1.9018	1	178760	+		50978	23082	35539	35591	56318	56318					0.033629736052489534
MEEYKSAIF	9	Unmodified	_MEEYKSAIF_					0	0	0			REV__nc|ENSG00000134057|P14635-2|CCNB1	REV__nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.2649536132812	2	559.26535	1116.51615	0.34789	0.00019456	-0.17541	-9.8099E-05	0.17248	9.6462E-05	559.2652022903492	80.016	0.71342	79.77	79.278	79.992	-0.2465					31	16	3	0	0	0	0.2508	1	9567	9567		82.241	0	1	813490	+		50979	23415	35540	35592	56319	56319					-0.03745029248239007
MEFCIRFCS	9	Unmodified	_MEFCIRFCS_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.8087768554688	2	568.240298	1134.46604	0.41368	0.00023507	3.6727	0.002087	4.0864	0.0023221	568.2421044724024	76.991	0.83945	76.739	75.984	76.823	-0.25163					30	19	2	0	0	0	0.024495	1	9137	9137		19.997	0	1	94808	+		50980	21692	35541	35593	56320	56320					-0.09581178449366234
MEFDIWYN	8	Unmodified	_MEFDIWYN_					0	0	0		ENSG00000088727|ENST00000684063|KIF9;nc|ENSG00000088727|Q9HAQ2-2|KIF9	ENSG00000088727|ENST00000684063|KIF9	ENSG00000088727|ENST00000684063|KIF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.8146362304688	2	559.236593	1116.45863	-0.39326	-0.00021993	3.5664	0.0019945	3.1731	0.0017745	559.2386120056472	81.902	0.36472	81.928	81.7	82.065	0.025719					12	8	2	0	0	0	0.027866	1	10106	10106		51.335	7.2187	1	103990			50981	1872	35542	35594	56321	56321					-0.09493871453787506
MEFFGSEEIT	10	Unmodified	_MEFFGSEEIT_					0	0	0			REV__nc|ENSG00000006432|P80192-4|MAP3K9	REV__nc|ENSG00000006432|P80192-4|MAP3K9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.259521484375	2	595.257722	1188.50089	-0.56865	-0.00033849	3.4217	0.0020368	2.8531	0.0016983	595.2596141171159	76.472	1.2218	76.22	75.641	76.863	-0.25162					83	29	4	0	0	0	0.50466	1	9105	9105		87.754	7.8151	1	4054100	+		50982	19830	35543	35595	56322	56322					-0.08581940836052127
MEFHRIMK	8	Unmodified	_MEFHRIMK_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.3103637695312	2	546.278072	1090.54159	-0.92395	-0.00050474	-0.77823	-0.00042513	-1.7022	-0.00092987	546.277351417803	103.22	0.51346	103.22	103	103.51	0					14	11	2	0	0	0	0.027866	1	13268	13268		25.45	0	1	65733			50983	5284	35544	35596	56323	56323					-5.8332067737865145E-05
MEFLADLLF	9	Unmodified	_MEFLADLLF_					0	0	0		nc|ENSG00000214198|Q6P2S7|TTC41P;nc|ENSG00000214198|Q6P2S7-2|TTC41P;ENST00000551270.1_1_12:104237536-104277386:-|nuORF;ENST00000548527.5_2_12:104238192-104276310:-|nuORF	nc|ENSG00000214198|Q6P2S7|TTC41P	nc|ENSG00000214198|Q6P2S7|TTC41P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2404174804688	2	549.780636	1097.54672	0.018873	1.0376E-05	-1.5505	-0.00085246	-1.5317	-0.00084208	550.2805599340378	49.445	0.49233	49.264	49.077	49.569	-0.1815					20	12	2	0	0	0	0.024487	1	4986	4986		24.203	4.8428	1	687290			50984	18715	35545	35597	56324	56324					0.001847491368152987
MEFRSVAQA	9	Unmodified	_MEFRSVAQA_					0	0	0		ENST00000366522.6_1_1:245246981-245285431:+|nuORF;ENST00000479923.1_1_1:245270575-245285431:+|nuORF	ENST00000366522.6_1_1:245246981-245285431:+|nuORF	ENST00000366522.6_1_1:245246981-245285431:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.29248046875	2	519.755484	1037.49641	-0.41149	-0.00021387	-3.2487	-0.0016886	-3.6602	-0.0019024	519.7535407247371	73.712	0.68598	73.441	72.925	73.611	-0.27126					28	17	4	0	0	0	0.024257	1	8906	8906		33.922	0	1	1193300			50985	12816	35546	35598	56325	56325					-0.02083360468304818
MEFTHIIID	9	Unmodified	_MEFTHIIID_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2655639648438	2	559.781167	1117.54778	-0.14968	-8.3789E-05	-1.8962	-0.0010614	-2.0458	-0.0011452	559.7796847128085	83.415	0.25576	83.276	83.168	83.424	-0.1386					11	5	4	0	0	0	0.023417	1	10059	10059		79.451	42.292	1	66320			50986	6526	35547	35599	56326	56326					-0.006290364942515225
MEFVFKLS	8	Unmodified	_MEFVFKLS_					0	0	0			REV__ENSG00000187713|ENST00000343666|TMEM203	REV__ENSG00000187713|ENST00000343666|TMEM203	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7637634277344	2	500.762246	999.50994	-0.00619	-3.0997E-06	2.3685	0.001186	2.3623	0.0011829	500.76340134071575	99.566	0.78098	99.576	99.046	99.827	0.010231					37	17	3	0	0	0	0.68535	1	12697	12697		68.485	0	1	500290	+		50987	27960	35548	35600	56327	56327					0.010164973109226594
MEFYKQCAV	9	Unmodified	_MEFYKQCAV_					0	0	0			REV__ENSG00000146143|ENST00000615550|PRIM2	REV__ENSG00000146143|ENST00000615550|PRIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3234252929688	2	559.754095	1117.49364	-0.68665	-0.00038436	-0.44458	-0.00024885	-1.1312	-0.00063321	559.7538241376019	83.05	0.29778	83.076	82.96	83.257	0.02655					10	6	2	0	0	0	0.02435	1	10321	10321		51.335	10.557	1	53785	+		50988	24463	35549	35601	56328	56328					-0.06040951917498205
MEGAVLRIV	9	Unmodified	_MEGAVLRIV_					0	0	0			REV__ENST00000477706.1_1_X:53458466-53459266:-|nuORF	REV__ENST00000477706.1_1_X:53458466-53459266:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.2850646972656	2	494.28642	986.558287	-0.55739	-0.00027551	0.3638	0.00017982	-0.19359	-9.569E-05	494.28645822732386	51.586	0.93964	51.438	51.193	52.132	-0.14735					86	26	4	0	0	0	0.27161	1	5457	5457		79.451	10.966	1	4971300	+		50989	20474	35550	35602	56329	56329					0.06446990950826148
MEGIFIKP	8	Unmodified	_MEGIFIKP_					0	0	0		ENSG00000128228|ENST00000248958|SDF2L1	ENSG00000128228|ENST00000248958|SDF2L1	ENSG00000128228|ENST00000248958|SDF2L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.78173828125	2	467.756964	933.499375	-0.43689	-0.00020436	1.4363	0.00067183	0.9994	0.00046748	467.7571325272673	29.332	0.66956	29.183	28.956	29.626	-0.14952					22	15	2	0	0	0	0.027866	1	1822	1822		65.803	19.831	1	275440			50990	4280	35551	35603	56330	56330					0.029965146565018586
MEGIVIVKV	9	Unmodified	_MEGIVIVKV_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.30078125	2	494.298996	986.583439	0.57173	0.00028261	2.7614	0.001365	3.3331	0.0016476	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	0.87448	1	12291	12291		34.173	3.6689	1	37513000			50991	10619	35552	35604	56331	56331					0.08961045753403596
MEGIVIVKV	9	Unmodified	_MEGIVIVKV_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.30096435546875	2	494.298996	986.583439	0.096982	4.7938E-05	3.4651	0.0017128	3.5621	0.0017607	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.94809	1	11972	11972		29.15	3.6994	1	34796000			50992	10619	35552	35604	56332	56332					0.08961045753403596
MEGLEARR	8	Unmodified	_MEGLEARR_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.779052734375	2	481.247826	960.481099	-1.6772	-0.00080717	-3.1415	-0.0015119	-4.8188	-0.002319	481.2463837115331	60.515	1.0425	60.594	60.28	61.322	0.078888					73	27	4	0	0	0	0.027866	1	6884	6884		55.504	0	1	12019000			50993	1220	35553	35605	56333	56333					-0.0007222726550253356
MEGPLMVAL	9	Unmodified	_MEGPLMVAL_					0	0	0		ENST00000571668.5_1_17:4437040-4440234:+|nuORF	ENST00000571668.5_1_17:4437040-4440234:+|nuORF	ENST00000571668.5_1_17:4437040-4440234:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.74993896484375	2	480.748282	959.48201	-0.18537	-8.9117E-05	3.8591	0.0018552	3.6737	0.0017661	480.7500768326652	32.962	4.3501	32.962	31.257	35.608	0					298	113	4	0	0	0	0.52323	1	2216	2216		57.811	3.0466	1	8486100			50994	17043	35554	35606	56334	56334					0.000648510591872764
MEGTHILEY	9	Unmodified	_MEGTHILEY_					0	0	0			REV__ENSG00000062370|ENST00000354340|ZNF112	REV__ENSG00000062370|ENST00000354340|ZNF112	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.275390625	2	546.755149	1091.49575	-0.6589	-0.00036026	-4.209	-0.0023013	-4.8679	-0.0026615	546.7528648674877	77.469	0.47057	77.307	77.183	77.653	-0.16196					15	10	2	0	0	0	0.024354	1	9235	9235		38.806	0	1	162740	+		50995	20263	35555	35607	56335	56335					-0.04634199908014125
MEGYGLVGLPL	11	Unmodified	_MEGYGLVGLPL_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3;nc|ENSG00000120645|Q9UPP2-2|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.8097534179688	2	574.804642	1147.59473	4.0221	0.0023119	2.0946	0.001204	6.1167	0.0035159	574.8056713636646	18.052	0.8699	18.112	17.825	18.695	0.06036					30	18	2	0	0	0	1.0614	1	241	241		21.96	2.5999	1	69054			50996	3826	35556	35608	56336	56336					0.026838230568955623
MEHDVEIN	8	Unmodified	_MEHDVEIN_					0	0	0			REV__ENST00000261401.7_1_12:109039328-109039364:-|nuORF	REV__ENST00000261401.7_1_12:109039328-109039364:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2850646972656	2	493.716024	985.417496	-0.53911	-0.00026617	1.2092	0.00059702	0.67013	0.00033085	493.71643568285185	51.829	0.57911	51.682	51.406	51.985	-0.14735					23	16	2	0	0	0	0.027866	1	5457	5457		60.972	4.2509	1	265490	+		50997	29621	35557	35609	56337	56337					-0.07579632493263944
MEHLKMKSL	9	Unmodified	_MEHLKMKSL_					0	0	0		ENST00000573841.5_1_17:80693623-80699341:+|nuORF;ENST00000574496.5_1_17:80693512-80698819:+|nuORF;ENST00000570734.1_2_17:80696358-80706928:+|nuORF;ENSG00000167363|ENST00000300784|FN3K	ENST00000573841.5_1_17:80693623-80699341:+|nuORF	ENST00000573841.5_1_17:80693623-80699341:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8012084960938	2	558.798837	1115.58312	-0.10191	-5.6945E-05	2.7675	0.0015465	2.6656	0.0014895	558.8000245208339	86.82	1.0626	86.683	86.268	87.331	-0.13734					61	24	4	0	0	0	0.40693	1	10552	10552		65.465	8.7443	1	1034200			50998	7677	35558	35610	56338	56338					0.029953027618830674
MEHNVAYPK	9	Unmodified	_MEHNVAYPK_					0	0	0		nc|ENSG00000166501|P05771|PRKCB;ENSG00000166501|ENST00000643927|PRKCB	nc|ENSG00000166501|P05771|PRKCB	nc|ENSG00000166501|P05771|PRKCB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.294677734375	2	544.763309	1087.51206	-0.94994	-0.00051749	1.0089	0.00054959	0.058922	3.2098E-05	544.7638645028717	48.228	0.79961	47.952	47.457	48.257	-0.27598					34	21	3	0	0	0	0.024506	1	4693	4693		23.042	3.6825	1	248150			50999	7572	35559	35611	56339	56339					-0.028190739512638174
MEHVLDPDSE	10	Unmodified	_MEHVLDPDSE_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.771240234375	2	586.250428	1170.4863	-0.3805	-0.00022307	4.3933	0.0025756	4.0128	0.0023525	586.2528631698199	79.31	0.46114	79.16	78.943	79.404	-0.15051					18	10	2	0	0	0	0.03519	1	9484	9484		34.173	6.2903	1	211440			51000	3042	35560	35612	56340	56340					-0.09212012984221474
MEIAGELGVV	10	Unmodified	_MEIAGELGVV_					0	0	0			REV__ENST00000551739.5_1_12:56346469-56347287:+|nuORF	REV__ENST00000551739.5_1_12:56346469-56347287:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.2672119140625	2	509.267893	1016.52123	-1.0672	-0.00054347	1.0213	0.00052011	-0.045881	-2.3366E-05	509.2682614222805	61.983	0.69149	61.983	61.492	62.183	0					57	18	6	0	0	0	1.0271	1	7216	7216		42.396	8.2236	1	5651600	+		51001	20308	35561	35613	56341	56341					0.01363274614425336
MEIAWLTD	8	Unmodified	_MEIAWLTD_					0	0	0			REV__nc|ENSG00000130816|P26358|DNMT1	REV__nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7721862792969	2	489.733686	977.452819	0.27328	0.00013383	-4.3648	-0.0021376	-4.0916	-0.0020038	489.7314267799308	42.249	1.7696	42.249	40.981	42.75	0					71	50	2	0	0	0	0.027866	1	3949	3949		60.294	19.721	1	321540	+		51002	23159	35562	35614	56342	56342					-0.036809699654554606
MEIAWLTD	8	Unmodified	_MEIAWLTD_					0	0	0			REV__nc|ENSG00000130816|P26358|DNMT1	REV__nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7718505859375	2	489.733686	977.452819	-0.33212	-0.00016265	-3.5817	-0.0017541	-3.9138	-0.0019167	489.7318019864221	42.201	1.9233	42.227	40.937	42.861	0.026012					87	54	2	0	0	0	0.027866	1	3899	3899		40.573	0	1	339810	+		51003	23159	35562	35614	56343	56343					-0.036809699654554606
MEIFSLQYS	9	Unmodified	_MEIFSLQYS_					0	0	0		DNAH11|p.H591Q|1|0.24|ENSG00000105877|chr7:21588126-21588126|T/A|missense_variant	DNAH11|p.H591Q|1|0.24|ENSG00000105877|chr7:21588126-21588126|T/A|missense_variant	DNAH11|p.H591Q|1|0.24|ENSG00000105877|chr7:21588126-21588126|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2650146484375	2	559.26535	1116.51615	1.115	0.00062357	-1.2328	-0.00068945	-0.1178	-6.5884E-05	559.2644755057369	82.938	1.8312	82.827	81.278	83.109	-0.11006					86	43	3	0	0	0	0.25032	1	10331	10331		82.305	0	1	1304400			51004	649	35563	35615	56344	56344					-0.037450292482162695
MEIGRPRKD	9	Unmodified	_MEIGRPRKD_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.7484130859375	2	551.295307	1100.57606	-0.089996	-4.9614E-05	-0.4961	-0.0002735	-0.5861	-0.00032311	551.2949352258952	58.496	0.38098	58.308	58.05	58.431	-0.18795					15	8	2	0	0	0	0.024477	1	6413	6413		20.947	0	1	575870			51005	18066	35564	35616	56345	56345					0.029797062056786672
MEIKAASLR	9	Unmodified	_MEIKAASLR_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;HUWE1|p.C349Yfs*23|1|0.16|ENSG00000086758|chrX:53628819-53628820|AC/-|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2909240722656	2	509.789327	1017.5641	-0.61791	-0.000315	1.3445	0.00068542	0.7266	0.00037041	510.2917193374833	57.36	0.59761	57.455	57.165	57.763	0.09531					45	15	5	0	0	0	0.30449	1	6379	6379		75.043	1.0686	1	2906400			51006	1825	35565	35617	56346	56346					0.05602089462479398
MEISYPKVEG	10	Unmodified	_MEISYPKVEG_					0	0	0			REV__ENSG00000169019|ENST00000381571|COMMD8	REV__ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7824096679688	2	576.783907	1151.55326	-0.73592	-0.00042447	-2.0573	-0.0011866	-2.7932	-0.0016111	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	1.0002	1	7512	7512		45.972	5.1941	1	1832600	+		51007	26310	35566	35618	56347	56347					-0.016453577024549304
MEITIKGLP	9	Unmodified	_MEITIKGLP_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2783203125	2	501.288628	1000.5627	0.59802	0.00029978	3.0836	0.0015458	3.6816	0.0018455	501.79071983975217	79.859	0.87476	79.612	78.947	79.822	-0.2465					25	20	2	0	0	0	0.024	1	9556	9556		55.504	0	1	105130			51008	1685	35567	35619	56348	56348					0.06244455373735036
MEITRKVV	8	Unmodified	_MEITRKVV_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2425537109375	2	488.28642	974.558287	-0.33024	-0.00016125	-3.392	-0.0016563	-3.7222	-0.0018175	488.2847637585826	61.013	0.7092	61.013	60.546	61.255	0					33	18	3	0	0	0	0.027866	1	7037	7037		57.811	0	1	535990			51009	8932	35568	35620	56349	56349					0.0699899095083083
MEIVLSMLVE	10	Unmodified	_MEIVLSMLVE_					0	0	0			REV__nc|ENSG00000164442|Q99967-2|CITED2	REV__nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.3056640625	2	582.306161	1162.59777	-2.0083	-0.0011694	1.6597	0.00096646	-0.34857	-0.00020297	582.3069977082218	62.606	0.70618	62.606	62.384	63.09	0					44	17	3	0	0	0	0.52982	1	7305	7305		84.916	2.165	1	2672900	+		51010	25756	35569	35621	56350	56350					0.022973301193360385
MEIVVAPLY	9	Oxidation (M)	_M(Oxidation (M))EIVVAPLY_		M(1)EIVVAPLY		M(41)EIVVAPLY	0	0	1			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.78271484375	2	525.780636	1049.54672	0.46431	0.00024412	2.7406	0.0014409	3.2049	0.0016851	525.7820983599777	49.833	1.0497	49.652	49.268	50.317	-0.18071					80	27	6	0	0	0	0.78069	1	5052	5052		40.573	6.4001	1	14979000	+		51011	21857	35570	35622	56351	56351		658			0.023927491368112896
MEIVYSEIK	9	Unmodified	_MEIVYSEIK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2891235351562	2	556.288825	1110.5631	0.28298	0.00015742	1.7321	0.00096356	2.0151	0.001121	556.2885791820868	67.439	3.4468	67.462	66.517	69.963	0.023903					212	87	5	0	0	0	0.56934	1	7982	7982		54.776	8.0099	1	2760900	+		51012	25017	35571	35623	56352	56352					0.012238303029107556
MEKALQIK	8	Unmodified	_MEKALQIK_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7972106933594	2	480.78097	959.547388	0.48662	0.00023396	-4.1732	-0.0020064	-3.6866	-0.0017724	480.77831234013166	69.17	0.33774	68.877	68.753	69.09	-0.29291					12	8	2	0	0	0	0.027866	1	8292	8292		47.916	10.756	1	84878	+		51013	24099	35572	35624	56353	56353					0.06599588576534643
MEKDPAEPE	9	Unmodified	_MEKDPAEPE_					0	0	0		ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	ENSG00000122965|ENST00000261741|RBM19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3233032226562	2	523.228965	1044.44338	-0.077929	-4.0775E-05	-2.3999	-0.0012557	-2.4778	-0.0012965	523.2276237585801	67.242	0.44503	67.266	66.985	67.43	0.023903					14	10	2	0	0	0	0.024025	1	7962	7962		36.447	0	1	195970			51014	3948	35573	35625	56354	56354					-0.0770678304163539
MEKIANAPRQ	10	Unmodified	_MEKIANAPRQ_					0	0	0			REV__ENSG00000076242|ENST00000231790|MLH1	REV__ENSG00000076242|ENST00000231790|MLH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7559204101562	2	579.308415	1156.60228	0.096379	5.5833E-05	-1.0476	-0.00060688	-0.95121	-0.00055104	579.3076196644968	74.785	0.70826	74.509	74.265	74.973	-0.27573					23	16	2	0	0	0	0.03519	1	8881	8881		37.812	3.639	1	327090	+		51015	20564	35574	35626	56355	56355					0.03023975377163879
MEKIANAPRQ	10	Unmodified	_MEKIANAPRQ_					0	0	0			REV__ENSG00000076242|ENST00000231790|MLH1	REV__ENSG00000076242|ENST00000231790|MLH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	579.308415	1156.60228	0.57299	0.00033194	-6.7379	-0.0039033	-6.1649	-0.0035714	579.3044606987575	74.2	0.72275	74.2	73.828	74.551	0	-0.13552	-0.0030711	NaN	30.318	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242110	+		51016	20564	35574	35626							0.03023975377163879
MEKIANAPRQ	10	Unmodified	_MEKIANAPRQ_					0	0	0			REV__ENSG00000076242|ENST00000231790|MLH1	REV__ENSG00000076242|ENST00000231790|MLH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	579.308415	1156.60228	-0.096407	-5.5849E-05	-5.4317	-0.0031466	-5.5281	-0.0032025	579.3049734444186	74.461	0.75842	74.202	73.902	74.661	-0.25887	-0.1336	-0.0015577	NaN	30.318	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333720	+		51017	20564	35574	35626							0.03023975377163879
MEKIANAPRQ	10	Unmodified	_MEKIANAPRQ_					0	0	0			REV__ENSG00000076242|ENST00000231790|MLH1	REV__ENSG00000076242|ENST00000231790|MLH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	579.308415	1156.60228	-0.64594	-0.0003742	-4.551	-0.0026364	-5.1969	-0.0030106	579.3053050586135	74.169	0.76545	74.178	73.924	74.69	0.0096512	-0.15739	-0.00053732	NaN	30.318	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280970	+		51018	20564	35574	35626							0.03023975377163879
MEKINPKGLA	10	Unmodified	_MEKINPKGLA_					0	0	0		ENSG00000187033|ENST00000335556|SAMD7	ENSG00000187033|ENST00000335556|SAMD7	ENSG00000187033|ENST00000335556|SAMD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7962036132812	2	550.810259	1099.60597	-0.22089	-0.00012167	-1.8632	-0.0010262	-2.084	-0.0011479	550.8089873361151	57.777	0.69994	57.777	57.459	58.159	0					28	18	2	0	0	0	0.03519	1	6515	6515		54.776	3.4409	1	2038000			51019	9602	35575	35627	56356	56356					0.06014645151026343
MEKKIQRE	8	Unmodified	_MEKKIQRE_					0	0	0		NSRP1|p.E131Q|1|0.25|ENSG00000126653|chr17:30179180-30179180|G/C|missense_variant;ENST00000444067.2_1_1:78313109-78313610:+|nuORF;ENSG00000126653|ENST00000247026|NSRP1	NSRP1|p.E131Q|1|0.25|ENSG00000126653|chr17:30179180-30179180|G/C|missense_variant	NSRP1|p.E131Q|1|0.25|ENSG00000126653|chr17:30179180-30179180|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2904052734375	2	531.292233	1060.56991	-0.92811	-0.0004931	-3.0086	-0.0015985	-3.9367	-0.0020915	531.2905865054025	55.285	1.1061	55.139	54.837	55.943	-0.14609					104	30	4	0	0	0	0.56311	1	5983	5983		79.713	4.6693	1	46224000			51020	4208	35576	35628	56357	56357					0.042051879741620724
MEKKIQRE	8	Unmodified	_MEKKIQRE_					0	0	0		NSRP1|p.E131Q|1|0.25|ENSG00000126653|chr17:30179180-30179180|G/C|missense_variant;ENST00000444067.2_1_1:78313109-78313610:+|nuORF;ENSG00000126653|ENST00000247026|NSRP1	NSRP1|p.E131Q|1|0.25|ENSG00000126653|chr17:30179180-30179180|G/C|missense_variant	NSRP1|p.E131Q|1|0.25|ENSG00000126653|chr17:30179180-30179180|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.286865234375	2	531.292233	1060.56991	-0.63627	-0.00033805	-3.5313	-0.0018761	-4.1676	-0.0022142	531.2903080935488	55.374	1.2754	55.143	54.748	56.023	-0.23087					107	35	4	0	0	0	0.61331	1	5904	5904		75.043	6.2565	1	52376000			51021	4208	35576	35628	56358	56358					0.042051879741620724
MEKLLRLC	8	Carbamidomethyl (C)	_MEKLLRLC(Carbamidomethyl (C))_	MEKLLRLC(1)		MEKLLRLC(79)		0	1	0		nc|ENSG00000111452|Q6QNK2-4|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;ENST00000541143.5_1_12:131438992-131451159:+|nuORF	nc|ENSG00000111452|Q6QNK2-4|ADGRD1	nc|ENSG00000111452|Q6QNK2-4|ADGRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8175048828125	2	531.793555	1061.57256	-0.20863	-0.00011095	3.0807	0.0016383	2.872	0.0015273	531.7953281712195	88.54	1.3113	88.54	88.128	89.44	0					62	30	3	0	0	0	0.027866	1	11159	11159		79.451	19.333	1	556320			51022	3118	35577	35629	56359	56359	40				0.04423320107480322
MEKLLRLC	8	Carbamidomethyl (C)	_MEKLLRLC(Carbamidomethyl (C))_	MEKLLRLC(1)		MEKLLRLC(94)		0	1	0		nc|ENSG00000111452|Q6QNK2-4|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;ENST00000541143.5_1_12:131438992-131451159:+|nuORF	nc|ENSG00000111452|Q6QNK2-4|ADGRD1	nc|ENSG00000111452|Q6QNK2-4|ADGRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8153076171875	2	531.793555	1061.57256	0.28173	0.00014982	2.9611	0.0015747	3.2428	0.0017245	531.7950728779733	88.535	1.3954	88.507	88.05	89.445	-0.027657					69	32	3	0	0	0	0.027866	1	11131	11131		94.006	16.689	1	706290			51023	3118	35577	35629	56360	56360	40				0.04423320107480322
MEKMRQQT	8	Unmodified	_MEKMRQQT_					0	0	0			REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	REV__nc|ENSG00000122483|Q5T9S5-2|CCDC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.78955078125	2	526.254794	1050.49503	-0.23641	-0.00012441	2.2265	0.0011717	1.9901	0.0010473	526.255665201591	76.086	0.82365	75.828	75.398	76.221	-0.25866					40	20	3	0	0	0	0.027866	1	9067	9067		45.972	12.457	1	486270	+		51024	22645	35578	35630	56361	56361					-0.028193178287210685
MEKRKQKEAR	10	Unmodified	_MEKRKQKEAR_					0	0	0			REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7801818847656	3	435.246956	1302.71904	-0.62564	-0.00027231	-2.324	-0.0010115	-2.9496	-0.0012838	435.24593184300204	38.626	0.5353	38.405	38.153	38.688	-0.22149					44	13	4	0	0	0	0.03519	1	3178	3178		30.569	13.402	1	491930	+		51025	19200	35579	35631	56362	56362					0.07978713596912712
MEKRMQAI	8	Oxidation (M)	_M(Oxidation (M))EKRMQAI_		M(1)EKRMQAI		M(45)EKRM(-45)QAI	0	0	1			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2353515625	2	511.759712	1021.50487	-0.62043	-0.00031751	-2.699	-0.0013812	-3.3194	-0.0016987	511.75814488139775	57.614	0.6574	57.436	57.096	57.754	-0.17775					34	16	3	0	0	0	0.027866	1	6276	6276		68.787	10.005	2	951710	+		51026	27000	35580	35632	56363	56363		802			-0.0050212982333732725
MEKSIQAPT	9	Oxidation (M)	_M(Oxidation (M))EKSIQAPT_		M(1)EKSIQAPT		M(72)EKSIQAPT	0	0	1			REV__nc|ENSG00000014123|O94874-3|UFL1	REV__nc|ENSG00000014123|O94874-3|UFL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.279541015625	2	510.755149	1019.49575	-0.51826	-0.0002647	0.80609	0.00041172	0.28783	0.00014701	510.7551074685356	34.957	0.87321	34.745	34.32	35.193	-0.21246					50	21	4	0	0	0	0.023454	1	2668	2668		71.877	16.373	1	347100	+		51027	19963	35581	35633	56364	56364		616			-0.013221999080087699
MEKTKWLD	8	Unmodified	_MEKTKWLD_					0	0	0		ENST00000567441.5_3_15:43426167-43441319:+|nuORF;ENST00000570109.1_1_15:43426051-43427957:+|nuORF;ENSG00000137842|ENST00000260403|TMEM62	ENST00000567441.5_3_15:43426167-43441319:+|nuORF	ENST00000567441.5_3_15:43426167-43441319:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2798461914062	2	525.76806	1049.52157	0.087585	4.6049E-05	-0.89312	-0.00046957	-0.80553	-0.00042352	525.7677216902855	78.973	0.78175	78.992	78.693	79.475	0.018677					51	18	5	0	0	0	0.027866	1	9690	9690		30.504	2.6214	1	712910			51028	5167	35582	35634	56365	56365					-0.001213056657661582
MELAELLLL	9	Unmodified	_MELAELLLL_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1;REV__SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.8023071289062	2	522.804111	1043.59367	-0.74457	-0.00038926	-2.463	-0.0012877	-3.2076	-0.0016769	522.8026666660162	97.124	2.4312	97.124	96.748	99.179	0					119	55	5	0	0	0	0.20967	2	12434	12411;12434		87.754	5.4584	1	2413800	+		51029	26775;23949	35583	35635	56366;56367	56367					0.0736160868798379
MELAELLLL	9	Unmodified	_MELAELLLL_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1;REV__SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.8023071289062	2	522.804111	1043.59367	-0.090795	-4.7468E-05	-3.1734	-0.001659	-3.2642	-0.0017065	522.8023658714742	97.073	2.0363	96.912	96.168	98.204	-0.16106					130	47	4	0	0	0	0.18915	1	11977	11977		90.777	11.326	1	2317900	+		51030	26775;23949	35583	35635	56368	56368					0.0736160868798379
MELAEPSRR	9	Unmodified	_MELAEPSRR_					0	0	0			REV__ENST00000571306.1_1_17:1057467-1057878:-|nuORF	REV__ENST00000571306.1_1_17:1057467-1057878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3167724609375	2	544.77949	1087.54443	-1.9094	-0.0010402	-3.2821	-0.001788	-5.1915	-0.0028282	544.777618453342	90.777	0.37595	90.777	90.553	90.929	0					14	8	2	0	0	0	0.024344	1	11477	11477		45.972	22.93	1	192660	+		51031	35402	35584	35636	56369	56369					0.00415713451729971
MELAKKGF	8	Unmodified	_MELAKKGF_					0	0	0		nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000182890|ENST00000328078|GLUD2;ENSG00000148672|ENST00000277865|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.26513671875	2	462.254588	922.494624	-0.20336	-9.4004E-05	-3.569	-0.0016498	-3.7724	-0.0017438	462.25297235622946	92.308	0.61023	92.186	91.935	92.545	-0.12242					31	14	3	0	0	0	0.027866	1	11364	11364		33.516	14.156	1	291360			51032	6045	35585	35637	56370	56370					0.030276305137363124
MELDDRRY	8	Unmodified	_MELDDRRY_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3029174804688	2	549.255848	1096.49714	-0.58704	-0.00032243	-3.3576	-0.0018442	-3.9447	-0.0021666	549.2536106139142	79.212	0.57931	79.212	78.91	79.489	0					22	13	3	0	0	0	0.027866	1	9812	9812		47.916	1.9636	1	132140	+		51033	23630	35586	35638	56371	56371					-0.04724565819265081
MELDVWVM	8	Unmodified	_MELDVWVM_					0	0	0			REV__REXO2|p.E77*|1|0.07|ENSG00000076043|chr11:114440734-114440735|-/C|frameshift_variant	REV__REXO2|p.E77*|1|0.07|ENSG00000076043|chr11:114440734-114440735|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2632141113281	2	511.737914	1021.46127	0.57341	0.00029344	4.3638	0.0022331	4.9372	0.0025266	511.74002279833235	83.927	0.76677	83.715	83.436	84.202	-0.21158					37	17	3	0	0	0	0.027866	1	10150	10150		35.201	0	1	380570	+		51034	20561	35587	35639	56372	56372					-0.04859739320477274
MELEPTPP	8	Unmodified	_MELEPTPP_					0	0	0		ENSG00000109101|ENST00000579795|FOXN1	ENSG00000109101|ENST00000579795|FOXN1	ENSG00000109101|ENST00000579795|FOXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2284240722656	2	457.220411	912.426269	0.24764	0.00011323	3.9897	0.0018242	4.2373	0.0019374	457.22216604329924	101.77	0.73613	101.6	101.24	101.97	-0.17178					34	16	3	0	0	0	0.97924	1	12608	12608		40.573	5.3719	1	309910			51035	2961	35588	35640	56373	56373					-0.033446588567812796
MELFYRAN	8	Unmodified	_MELFYRAN_					0	0	0			REV__nc|ENSG00000065675|Q04759-2|PRKCQ	REV__nc|ENSG00000065675|Q04759-2|PRKCQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.30517578125	2	522.252577	1042.4906	-0.79136	-0.00041329	2.9522	0.0015418	2.1609	0.0011285	522.2531047805039	82.6	0.21442	82.6	82.535	82.75	0					5	4	2	0	0	0	0.027866	1	10308	10308		38.806	0	1	32997	+		51036	20321	35589	35641	56374	56374					-0.028944589799721143
MELGKGAEV	9	Unmodified	_MELGKGAEV_					0	0	0			REV__nc|ENSG00000159842|Q12979-4|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7635803222656	2	467.239135	932.463718	-0.21333	-9.9675E-05	-3.3833	-0.0015808	-3.5966	-0.0016805	467.23764931238605	69.121	1.1257	69.121	68.789	69.915	0					46	28	3	0	0	0	0.019995	1	8395	8395		101.6	19.36	1	562500	+		51037	25277	35590	35642	56375	56375					-0.005215675911699691
MELHTETEK	9	Unmodified	_MELHTETEK_					0	0	0			REV__ENST00000478924.1_1_X:106185151-106185807:-|nuORF	REV__ENST00000478924.1_1_X:106185151-106185807:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.2655639648438	2	559.263339	1116.51212	-0.11854	-6.6294E-05	3.8854	0.0021729	3.7668	0.0021067	559.265302339393	83.473	2.8728	83.334	81.915	84.787	-0.13861					167	66	3	0	0	0	0.33245	1	10059	10059		71.296	2.811	1	704150	+		51038	23357	35591	35643	56376	56376					-0.04147118741934719
MELIKVLEA	9	Unmodified	_MELIKVLEA_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3035278320312	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.1158	1	10857	10857		107.01	13.812	1	10615000			51039	3387	35592	35644	56377	56377					0.06840724545213561
MELIKVLEA	9	Unmodified	_MELIKVLEA_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.80003	1	10502	10502		39.253	0.44669	1	14210000			51040	3387	35592	35644	56378	56378					0.06840724545213561
MELKKKVEN	9	Unmodified	_MELKKKVEN_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8147583007812	2	559.815541	1117.61653	0.49237	0.00027564	0.52164	0.00029202	1.014	0.00056766	559.8154523939778	83.581	2.7087	83.369	82.661	85.37	-0.21159					133	63	3	0	0	0	0.2508	1	10019	10019		82.241	10.363	1	459710	+		51041	19838	35593	35645	56379	56379					0.06242627805431766
MELKKKVEN	9	Unmodified	_MELKKKVEN_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8150024414062	2	559.815541	1117.61653	0.50737	0.00028404	0.18935	0.000106	0.69673	0.00039004	559.8152601891431	83.006	2.6173	82.825	82.679	85.296	-0.18079					113	61	3	0	0	0	0.2101	1	10043	10043		87.696	13.441	1	597740	+		51042	19838	35593	35645	56380	56380					0.06242627805431766
MELKKKVEN	9	Unmodified	_MELKKKVEN_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8161010742188	2	559.815541	1117.61653	0.015285	8.557E-06	0.53305	0.00029841	0.54834	0.00030697	559.8156804419684	83.139	2.4997	83.001	82.91	85.409	-0.1386					84	58	2	0	0	0	0.29158	1	10024	10024		76.774	2.5191	1	484900	+		51043	19838	35593	35645	56381	56381					0.06242627805431766
MELKRLGSV	9	Unmodified	_MELKRLGSV_					0	0	0		ENST00000414798.1_1_1:43300798-43312062:-|nuORF	ENST00000414798.1_1_1:43300798-43312062:-|nuORF	ENST00000414798.1_1_1:43300798-43312062:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7481079101562	2	516.797152	1031.57975	0.33103	0.00017107	-3.5332	-0.001826	-3.2022	-0.0016549	516.7949545392576	63.734	0.83634	63.476	63.276	64.112	-0.25824					53	21	4	0	0	0	0.024257	1	7219	7219		67.494	12.729	1	2549100			51044	13865	35594	35646	56382	56382					0.06522375979557182
MELLRDSDI	9	Unmodified	_MELLRDSDI_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2861328125	2	546.273706	1090.53286	-0.2339	-0.00012778	4.4238	0.0024166	4.1899	0.0022889	546.2761667854946	84.567	0.61832	84.567	84.463	85.082	0					27	14	2	0	0	0	0.015533	1	10578	10578		126.24	4.0666	1	1046800			51045	6487	35595	35647	56383	56383					-0.008785283622728457
MELLRDSDI	9	Unmodified	_MELLRDSDI_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.273706	1090.53286	0.59255	0.0003237	3.2329	0.0017661	3.8255	0.0020898	546.2755684643893	84.614	0.41935	84.455	84.279	84.698	-0.15868	-0.060956	-0.0018246	NaN	126.24	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126690			51046	6487	35595	35647							-0.008785283622728457
MELLRDSDI	9	Unmodified	_MELLRDSDI_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.273706	1090.53286	0.092677	5.0627E-05	3.4926	0.0019079	3.5853	0.0019586	546.275817217093	84.65	0.38219	84.512	84.323	84.705	-0.13789	-0.0042713	-0.0015409	NaN	126.24	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87564			51047	6487	35595	35647							-0.008785283622728457
MELLSRKEL	9	Oxidation (M)	_M(Oxidation (M))ELLSRKEL_		M(1)ELLSRKEL		M(80)ELLSRKEL	0	0	1			REV__OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant;REV__OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	REV__OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8114013671875	2	567.812999	1133.61144	0.23907	0.00013575	-3.0972	-0.0017586	-2.8582	-0.0016229	567.8110441978595	69.429	1.6416	69.179	68.462	70.103	-0.25063					77	37	4	0	0	0	0.26413	1	8056	8056		80.455	11.608	1	3027300	+		51048	24374;24348	35596	35648	56384	56384		723			0.049983239428229354
MELLTKNEN	9	Unmodified	_MELLTKNEN_					0	0	0		ENST00000555705.1_1_14:35005347-35005473:-|nuORF	ENST00000555705.1_1_14:35005347-35005473:-|nuORF	ENST00000555705.1_1_14:35005347-35005473:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.286376953125	2	546.273706	1090.53286	0.13276	7.2522E-05	1.7434	0.00095238	1.8762	0.0010249	546.2754922310467	83.102	2.0584	83.011	82.188	84.246	-0.090454					92	47	3	0	0	0	0.015852	1	10519	10519		139.97	17.794	1	334790			51049	16687	35597	35649	56385	56385					-0.008785283622728457
MELLVEAKL	9	Unmodified	_MELLVEAKL_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3009643554688	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.40693	1	10858	10858		65.465	1.2581	1	11897000	+		51050	26605	35598	35650	56386	56386					0.06840724545213561
MELMHAEK	8	Unmodified	_MELMHAEK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000583408.5_1_17:30207568-30228646:-|nuORF;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000560291.2_1_15:52152484-52153489:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7349548339844	2	494.733163	987.451773	0.5465	0.00027037	3.0283	0.0014982	3.5748	0.0017686	494.73452890308295	67.84	0.86897	67.585	67.279	68.148	-0.25516					48	20	4	0	0	0	0.96769	1	7828	7828		42.396	1.8235	1	1478700			51051	2920	35599	35651	56387	56387					-0.04245507606015053
MELMKLTPE	9	Unmodified	_MELMKLTPE_					0	0	0		ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.285888671875	2	546.277403	1090.54025	0.24775	0.00013534	-3.0038	-0.0016409	-2.756	-0.0015055	546.2763641941356	84.68	0.58884	84.477	84.211	84.8	-0.20329					26	13	3	0	0	0	0.021513	1	10204	10204		104.75	27.972	1	195080			51052	3900	35600	35652	56388	56388					-0.0013951208620710531
MELNEKRR	8	Unmodified	_MELNEKRR_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP;ENST00000492885.1_1_9:125898316-125898746:-|nuORF;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3;ENSG00000165209|ENST00000348403|STRBP;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2876586914062	2	538.287482	1074.56041	-0.5241	-0.00028212	2.8207	0.0015184	2.2966	0.0012362	538.2888129003421	89.655	1.0692	89.668	89.297	90.366	0.013443					42	25	2	0	0	0	0.20995	1	11234	11234		138.83	13.011	1	1835700			51053	4344;7382;17280	35601	35653	56389	56389					0.026114196886283025
MELNKIPYL	9	Oxidation (M)	_M(Oxidation (M))ELNKIPYL_		M(1)ELNKIPYL		M(150)ELNKIPYL	0	0	1			REV__ENSG00000198951|ENST00000396398|NAGA	REV__ENSG00000198951|ENST00000396398|NAGA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8021850585938	2	568.804642	1135.59473	-0.38413	-0.0002185	-3.2472	-0.001847	-3.6313	-0.0020655	568.8027695833946	81.635	1.6138	81.504	81.176	82.789	-0.13075					140	38	6	0	0	0	0.022311	2	10121	10121;10143		147.69	13.881	1	5479500	+		51054	28528	35602	35654	56390;56391	56390		845			0.032358230568661384
MELNKIPYL	9	Oxidation (M)	_M(Oxidation (M))ELNKIPYL_		M(1)ELNKIPYL		M(150)ELNKIPYL	0	0	1			REV__ENSG00000198951|ENST00000396398|NAGA	REV__ENSG00000198951|ENST00000396398|NAGA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.802734375	2	568.804642	1135.59473	-1.2999	-0.0007394	-2.3086	-0.0013131	-3.6085	-0.0020525	568.8033154427069	81.446	1.319	81.47	81.167	82.485	0.023911					104	31	5	0	0	0	0.022311	1	10066	10066		147.69	9.4511	1	5378700	+		51055	28528	35602	35654	56392	56392		845			0.032358230568661384
MELSLAVLEA	10	Unmodified	_MELSLAVLEA_					0	0	0		ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2860107421875	2	538.288825	1074.5631	-1.4272	-0.00076825	1.2628	0.00067973	-0.16445	-8.8521E-05	538.2871624252432	91.57	0.96288	91.57	91.215	92.178	0					78	22	5	0	0	0	0.10389	1	11597	11597		134.81	30.064	1	1818900			51056	11686	35603	35655	56393	56393					0.028798303029361705
MELSLAVLEA	10	Unmodified	_MELSLAVLEA_					0	0	0		ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2860107421875	2	538.288825	1074.5631	-0.8514	-0.0004583	1.2006	0.00064627	0.34921	0.00018798	538.2871414557976	91.593	1.0396	91.58	91.115	92.155	-0.012383					73	24	5	0	0	0	0.37169	2	11563	11563;11574		101.6	11.231	1	1666100			51057	11686	35603	35655	56394;56395	56394					0.028798303029361705
MELSLAVLEA	10	Unmodified	_MELSLAVLEA_					0	0	0		ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2860717773438	2	538.288825	1074.5631	-0.26911	-0.00014486	0.45116	0.00024286	0.18205	9.7998E-05	538.286807192827	91.564	1.31	91.575	91.154	92.464	0.010269					85	31	5	0	0	0	0.57594	1	11521	11521		79.713	7.8351	1	1934800			51058	11686	35603	35655	56396	56396					0.028798303029361705
MELSLAVLEA	10	Unmodified	_MELSLAVLEA_					0	0	0		ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	ENST00000275364.7_1_7:2768995-2769262:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.287109375	2	538.288825	1074.5631	-0.73498	-0.00039563	-2.6192	-0.0014099	-3.3541	-0.0018055	538.2872097823841	91.54	1.1037	91.417	90.874	91.978	-0.12341					44	25	3	0	0	0	0.64538	1	11244	11244		71.877	0.58177	1	1026400			51059	11686	35603	35655	56397	56397					0.028798303029361705
MELSMTYVK	9	Oxidation (M)	_MELSM(Oxidation (M))TYVK_		MELSM(1)TYVK		M(-69)ELSM(69)TYVK	0	0	1			REV__ENST00000503185.5_1_4:774291-774366:-|nuORF	REV__ENST00000503185.5_1_4:774291-774366:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.2659301757812	2	559.267035	1116.51952	-0.11854	-6.6294E-05	-2.7247	-0.0015238	-2.8432	-0.0015901	559.265302339393	83.473	2.8728	83.334	81.915	84.787	-0.13861					167	66	3	0	0	0	0.18915	1	10029	10029		90.777	18.899	2	704150	+		51060	33950	35604	35656	56398	56398		924			-0.034081024658689785
MELSTGRPN	9	Unmodified	_MELSTGRPN_					0	0	0			REV__MLH3|p.C501R|1|0.1|ENSG00000119684|chr14:75048155-75048155|A/G|missense_variant	REV__MLH3|p.C501R|1|0.1|ENSG00000119684|chr14:75048155-75048155|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7927551269531	2	502.745116	1003.47568	-0.27425	-0.00013788	-1.9782	-0.00099452	-2.2524	-0.0011324	502.7431736975841	64.403	0.58862	64.168	63.902	64.49	-0.2345					30	14	3	0	0	0	0.024025	1	7281	7281		44.377	8.7589	1	294090	+		51061	36381	35605	35657	56399	56399					-0.025919508479887554
MELTGIDLLS	10	Unmodified	_MELTGIDLLS_					0	0	0		nc|ENSG00000165195|P37287-3|PIGA	nc|ENSG00000165195|P37287-3|PIGA	nc|ENSG00000165195|P37287-3|PIGA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2864990234375	2	546.286282	1090.55801	0.2201	0.00012024	-1.1608	-0.00063414	-0.94072	-0.0005139	546.2852235687178	85.721	2.2746	85.721	84.751	87.026	0					118	53	3	0	0	0	0.62431	1	10782	10782		74.255	2.9593	1	598350			51062	18463	35606	35658	56400	56400					0.016355264403273395
MELTIIDKE	9	Unmodified	_MELTIIDKE_					0	0	0			REV__nc|ENSG00000106144|P42575-3|CASP2	REV__nc|ENSG00000106144|P42575-3|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2862548828125	2	546.286282	1090.55801	0.2201	0.00012024	-1.1608	-0.00063414	-0.94072	-0.0005139	546.2852235687178	85.721	2.2746	85.721	84.751	87.026	0					118	53	3	0	0	0	0.072054	1	10763	10763		120.62	5.162	1	598350	+		51063	21599	35607	35659	56401	56401					0.01635526440304602
MELTIIDKE	9	Unmodified	_MELTIIDKE_					0	0	0			REV__nc|ENSG00000106144|P42575-3|CASP2	REV__nc|ENSG00000106144|P42575-3|CASP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.287109375	2	546.286282	1090.55801	0.53278	0.00029105	-0.80458	-0.00043953	-0.2718	-0.00014848	546.2856507694288	84.322	0.85602	84.163	83.801	84.657	-0.15869					43	19	3	0	0	0	0.082191	1	10188	10188		116.9	0	1	1226100	+		51064	21599	35607	35659	56402	56402					0.01635526440304602
MELTLVKEE	9	Unmodified	_MELTLVKEE_					0	0	0			REV__ENST00000353809.9_1_15:28000351-28000453:-|nuORF	REV__ENST00000353809.9_1_15:28000351-28000453:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2861938476562	2	546.286282	1090.55801	0.034481	1.8837E-05	-0.59046	-0.00032256	-0.55598	-0.00030373	546.2856939990795	85.768	2.3757	85.573	84.552	86.928	-0.19508					123	55	3	0	0	0	0.10174	1	10408	10408		110.12	5.3733	1	644240	+		51065	30746	35608	35660	56403	56403					0.01635526440304602
MELTYLNPMG	10	Unmodified	_MELTYLNPMG_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.7880249023438	2	584.772485	1167.53042	-0.44893	-0.00026252	-0.12527	-7.3252E-05	-0.5742	-0.00033578	584.7722499370408	65.715	0.45853	65.473	65.248	65.706	-0.24145					16	10	2	0	0	0	0.03519	1	7531	7531		21.96	0	1	78214			51066	843	35609	35661	56404	56404					-0.04664700091575469
MELVTVKIK	9	Unmodified	_MELVTVKIK_					0	0	0			REV__ENSG00000047346|ENST00000619572|ATOSA	REV__ENSG00000047346|ENST00000619572|ATOSA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7655639648438	2	530.825378	1059.6362	-0.53184	-0.00028231	-0.30193	-0.00016027	-0.83377	-0.00044258	530.8253606077644	40.173	0.30325	40.06	39.94	40.243	-0.11223					11	7	2	0	0	0	0.024381	1	3506	3506		45.952	16.11	1	60274	+		51067	20123	35610	35662	56405	56405					0.10877003816199249
MEMHSKLN	8	Oxidation (M)	_MEM(Oxidation (M))HSKLN_		MEM(1)HSKLN		M(-52)EM(52)HSKLN	0	0	1			REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	REV__ENST00000566201.6_1_16:46508202-46534771:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.3052673339844	2	503.228245	1004.44194	0.3715	0.00018695	-2.4205	-0.0012181	-2.049	-0.0010311	503.2268504438411	68.559	0.33435	68.578	68.276	68.61	0.018913					11	8	2	0	0	0	0.027866	1	8101	8101		65.803	7.0212	2	86920	+		51068	35296	35611	35663	56406	56406		953			-0.06010695611382744
MEMLHEAQE	9	Unmodified	_MEMLHEAQE_					0	0	0		nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;ENSG00000182606|ENST00000327628|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2659301757812	2	559.236267	1116.45798	-0.34624	-0.00019363	0.58808	0.00032887	0.24184	0.00013525	559.235874550076	83.069	0.30117	82.931	82.867	83.168	-0.1386					9	6	2	0	0	0	0.023454	1	10029	10029		82.241	10.945	1	43700			51069	9147	35612	35664	56407	56407					-0.09559034165158664
MEMMKLPT	8	Unmodified	_MEMMKLPT_					0	0	0		ENST00000353364.7_1_12:62798129-62798264:+|nuORF	ENST00000353364.7_1_12:62798129-62798264:+|nuORF	ENST00000353364.7_1_12:62798129-62798264:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2736511230469	2	490.734317	979.454081	-0.53793	-0.00026398	-1.0362	-0.00050848	-1.5741	-0.00077246	490.7336133184366	56.525	0.61886	56.36	55.879	56.497	-0.16431					23	16	2	0	0	0	0.027866	1	6203	6203		58.782	3.2778	1	176180			51070	12613	35613	35665	56408	56408					-0.036467951925487796
MEMRHWDI	8	Unmodified	_MEMRHWDI_					0	0	0			REV__nc|ENSG00000152359|Q8NA72-3|POC5	REV__nc|ENSG00000152359|Q8NA72-3|POC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.265869140625	2	559.249511	1116.48447	-1.1261	-0.00062979	-3.4889	-0.0019512	-4.615	-0.002581	559.2473665819598	84.181	0.60022	84.108	83.787	84.387	-0.072769					24	13	2	0	0	0	0.027866	1	10459	10459		104.75	13.97	1	178010	+		51071	24834	35614	35666	56409	56409					-0.06911300483147897
MENAVPIVT	9	Unmodified	_MENAVPIVT_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.28192138671875	2	487.254785	972.495018	-1.3581	-0.00066176	1.6786	0.00081791	0.32047	0.00015615	487.2554473046404	64.906	0.96684	64.643	64.341	65.307	-0.2626					48	25	3	0	0	0	0.024294	1	7706	7706		45.952	19.259	1	2238300			51072	1273	35615	35667	56410	56410					0.007670054429354423
MENETDNVGV	10	Unmodified	_MENETDNVGV_					0	0	0			REV__nc|ENSG00000100478|Q9Y587-3|AP4S1	REV__nc|ENSG00000100478|Q9Y587-3|AP4S1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.2333984375	2	554.234778	1106.455	0.98486	0.00054584	-3.1059	-0.0017214	-2.1211	-0.0011756	554.2328665625762	85.433	0.91681	85.433	85.082	85.998	0					49	21	4	0	0	0	0.96822	1	10721	10721		49.536	0.094497	1	1417900	+		51073	21123	35616	35668	56411	56411					-0.09396586018283415
MENKKKDKD	9	Unmodified	_MENKKKDKD_					0	0	0		ENST00000508708.1_1_5:122881219-122881564:+|nuORF;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	ENST00000508708.1_1_5:122881219-122881564:+|nuORF	ENST00000508708.1_1_5:122881219-122881564:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.8099975585938	2	568.29243	1134.57031	-0.73504	-0.00041772	3.0618	0.00174	2.3268	0.0013223	568.2928831490108	69.334	0.22169	69.334	69.202	69.423	0					6	5	2	0	0	0	0.023835	1	8345	8345		80.455	4.2849	1	32760			51074	6193	35617	35669	56412	56412					0.008405629033404693
MENNQPQFN	9	Unmodified	_MENNQPQFN_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2794189453125	2	561.237655	1120.46076	0.66652	0.00037408	-0.93706	-0.00052591	-0.27054	-0.00015184	561.7384776737283	85.052	0.3297	85.052	84.917	85.247	0					11	7	2	0	0	0	0.024477	1	10664	10664		44.117	9.9443	1	50437			51075	18644	35618	35670	56413	56413					-0.09465442715963945
MENNRDKVLS	10	Unmodified	_MENNRDKVLS_					0	0	0		nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB	nc|ENSG00000070182|P11277-3|SPTB	nc|ENSG00000070182|P11277-3|SPTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.53656005859375	3	402.536283	1204.58702	0.4865	0.00019583	-0.0789	-3.176E-05	0.40759	0.00016407	402.5361007666304	35.036	4.2756	34.82	33.051	37.327	-0.21555					216	110	5	0	0	0	1.0275	1	2630	2630		42.338	0	1	1725400			51076	1419	35619	35671	56414	56414					-0.007089362106853514
MENNVSDRRPK	11	Unmodified	_MENNVSDRRPK_					0	0	0		ENSG00000151952|ENST00000422113|TMEM132D;nc|ENSG00000151952|Q14C87-2|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.765625	3	449.22622	1344.65683	0.35661	0.0001602	0.92898	0.00041732	1.2856	0.00057752	449.2272725241861	72.769	0.5386	72.779	72.529	73.068	0.0096512					14	12	2	0	0	0	0.024739	1	8790	8790		22.562	0	1	37922			51077	6243	35620	35672	56415	56415					-0.001710575420929672
MEPELLTMV	9	Unmodified	_MEPELLTMV_					0	0	0			REV__ENST00000422851.1_1_22:40915488-40929660:-|nuORF	REV__ENST00000422851.1_1_22:40915488-40929660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7655639648438	2	531.764129	1061.5137	-0.39379	-0.00020941	3.4721	0.0018463	3.0783	0.0016369	531.7659634065226	40.294	1.6621	40.294	39.733	41.396	0					90	46	4	0	0	0	0.14199	1	3514	3514		101.21	26.957	1	13000000	+		51078	32205	35621	35673	56416	56416					-0.014592009775242332
MEPELLTMV	9	Unmodified	_MEPELLTMV_					0	0	0			REV__ENST00000422851.1_1_22:40915488-40929660:-|nuORF	REV__ENST00000422851.1_1_22:40915488-40929660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7659301757812	2	531.764129	1061.5137	-0.082309	-4.3769E-05	3.3041	0.001757	3.2218	0.0017132	531.7658555488537	40.375	1.8675	40.263	39.83	41.697	-0.11223					110	51	4	0	0	0	0.29104	1	3542	3542		76.847	2.5916	1	12722000	+		51079	32205	35621	35673	56417	56417					-0.014592009775242332
MEPKDMLIK	9	Unmodified	_MEPKDMLIK_					0	0	0			REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF	REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.7938232421875	2	552.79322	1103.57189	-0.36694	-0.00020284	1.9749	0.0010917	1.608	0.00088887	552.7942539049557	42.68	1.2594	42.541	42.243	43.503	-0.13929					101	34	4	0	0	0	0.30449	1	3931	3931		75.043	5.4157	1	4945500	+		51080	34541	35622	35674	56418	56418					0.02424480667741591
MEPKDMLIK	9	Unmodified	_MEPKDMLIK_					0	0	0			REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF	REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.7938842773438	2	552.79322	1103.57189	-0.081987	-4.5322E-05	1.8272	0.0010101	1.7453	0.00096477	552.7941617486059	42.596	0.93877	42.622	42.323	43.262	0.026012					78	25	4	0	0	0	0.30449	2	3874	3874;3890		75.043	5.3471	1	5189200	+		51081	34541	35622	35674	56419;56420	56419					0.02424480667741591
MEPLFPAPF	9	Unmodified	_MEPLFPAPF_					0	0	0		nc|ENSG00000125510|P41146-2|OPRL1;ENSG00000125510|ENST00000336866|OPRL1	nc|ENSG00000125510|P41146-2|OPRL1	nc|ENSG00000125510|P41146-2|OPRL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2781982421875	2	524.762246	1047.50994	0.52512	0.00027557	0.029641	1.5554E-05	0.55476	0.00029112	525.2629518086252	56.772	0.23516	56.547	56.426	56.661	-0.2248					6	5	2	0	0	0	0.024412	1	6161	6161		40.573	0	1	103150			51082	4115	35623	35675	56421	56421					-0.011915026890847003
MEPLVPTQRI	10	Oxidation (M)	_M(Oxidation (M))EPLVPTQRI_		M(1)EPLVPTQRI		M(55)EPLVPTQRI	0	0	1			REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.5545654296875	3	400.553274	1198.63799	0.16148	6.4681E-05	3.5179	0.0014091	3.6794	0.0014738	400.5545899719665	26.834	0.59704	26.821	26.537	27.134	-0.012983					41	14	5	0	0	0	0.88431	1	1391	1391		55.084	8.6271	1	1864900	+		51083	33254	35624	35676	56422	56422		908			0.04662012834160123
MEPLVPTQRI	10	Oxidation (M)	_M(Oxidation (M))EPLVPTQRI_					0	0	1			REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	400.553274	1198.63799	0.21571	8.6405E-05	5.2658	0.0021092	5.4815	0.0021956	400.5554228196832	27.048	0.42313	26.806	26.571	26.995	-0.24217	0.020747	0.0019374	NaN	55.084	18	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69174	+		51084	33254	35624	35676				908			0.04662012834160123
MEPLVPTQRI	10	Oxidation (M)	_M(Oxidation (M))EPLVPTQRI_					0	0	1			REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	400.553274	1198.63799	0.854	0.00034207	6.8938	0.0027614	7.7478	0.0031034	400.5556688821128	26.847	0.50942	26.679	26.462	26.971	-0.16816	-0.1067	0.0038938	NaN	55.084	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58690	+		51085	33254	35624	35676				908			0.04662012834160123
MEPLVPTQRI	10	Oxidation (M)	_M(Oxidation (M))EPLVPTQRI_					0	0	1			REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.553274	1198.63799	-0.83077	-0.00033277	7.3971	0.0029629	6.5663	0.0026302	400.5562414669773	27.022	0.47456	26.865	26.629	27.104	-0.15664	0.079748	0.0044985	NaN	55.084	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76417	+		51086	33254	35624	35676				908			0.04662012834160123
MEPQCTSDLP	10	Unmodified	_MEPQCTSDLP_					0	0	0			REV__ENSG00000243477|ENST00000443094|NAA80	REV__ENSG00000243477|ENST00000443094|NAA80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7362060546875	2	560.736099	1119.45765	0.029329	1.6446E-05	1.2663	0.00071004	1.2956	0.00072648	560.7365794903599	88.57	0.75761	88.438	88.194	88.952	-0.13135					37	17	3	0	0	0	0.96965	1	10829	10829		49.442	0	1	699860	+		51087	28989	35625	35677	56423	56423					-0.09730453885003953
MEPRDLPPK	9	Unmodified	_MEPRDLPPK_					0	0	0		ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-3|GDPD2;ENST00000472623.1_1_X:69646726-69652182:+|nuORF;nc|ENSG00000130055|Q9HCC8-2|GDPD2	ENSG00000130055|ENST00000374382|GDPD2	ENSG00000130055|ENST00000374382|GDPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.7842407226562	2	541.786784	1081.55902	-0.78582	-0.00042575	-2.7032	-0.0014645	-3.489	-0.0018903	541.785132399779	67.44	1.1204	67.152	66.665	67.785	-0.28834					70	27	3	0	0	0	0.35646	1	8028	8028		68.787	2.3575	1	2047100			51088	4384	35626	35678	56424	56424					0.021497855998632076
MEPRVMDDD	9	Unmodified	_MEPRVMDDD_					0	0	0		ENSG00000171962|ENST00000399187|DRC3;nc|ENSG00000171962|Q9H069-2|DRC3	ENSG00000171962|ENST00000399187|DRC3	ENSG00000171962|ENST00000399187|DRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3034057617188	2	554.225899	1106.43724	-0.50177	-0.00027809	0.023757	1.3167E-05	-0.47801	-0.00026493	554.2258549654948	35.747	1.2589	35.791	35.156	36.415	0.04406					52	33	2	0	0	0	0.02435	1	2791	2791		42.396	17.877	1	183630			51089	8226	35627	35679	56425	56425					-0.1117162454481786
MEPTPNDLV	9	Unmodified	_MEPTPNDLV_					0	0	0			REV__nc|ENSG00000139737|Q8ND83-4|SLAIN1	REV__nc|ENSG00000139737|Q8ND83-4|SLAIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.31280517578125	2	508.241875	1014.4692	-0.04383	-2.2276E-05	-4.248	-0.002159	-4.2918	-0.0021813	508.23956638128453	63.549	0.35964	63.298	63.048	63.408	-0.25141					12	9	2	0	0	0	0.024436	1	7395	7395		38.806	0	1	98373	+		51090	23963	35628	35680	56426	56426					-0.03745888799357999
MEPVDAALLS	10	Unmodified	_MEPVDAALLS_					0	0	0		ENSG00000123091|ENST00000242719|RNF11	ENSG00000123091|ENST00000242719|RNF11	ENSG00000123091|ENST00000242719|RNF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	523.26535	1044.51615	0.27	0.00014128	0.36244	0.00018965	0.63244	0.00033093	523.2655192918692	67.975	0.86693	67.994	67.669	68.536	0.018913					59	22	3	0	0	0	0.03519	1	8115	8115		71.877	0	1	504900			51091	3954	35629	35681	56427	56427					-0.004330292482109144
MEQFMESCELI	11	Unmodified	_MEQFMESCELI_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.2816162109375	3	453.859158	1358.55565	0.65784	0.00029857	0.99746	0.00045271	1.6553	0.00075127	453.85961719667887	49.142	0.27863	49.142	48.934	49.212	0					10	7	2	0	0	0	0.024759	1	5060	5060		29.551	17.118	1	89756			51092	6450	35630	35682	56428	56428					-0.10929013351301364
MEQIESLHAE	10	Unmodified	_MEQIESLHAE_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.7883911132812	2	593.774071	1185.53359	-1.4579	-0.00086569	-1.6649	-0.00098857	-3.1228	-0.0018543	593.7730173207494	52.518	0.68965	52.249	51.944	52.633	-0.26903					39	17	3	0	0	0	0.03519	1	5473	5473		34.173	0	1	1513100	+		51093	26525	35631	35683	56429	56429					-0.05175733713213049
MEQKVLLWA	9	Unmodified	_MEQKVLLWA_					0	0	0			REV__ENST00000602599.1_1_2:61194615-61239025:-|nuORF	REV__ENST00000602599.1_1_2:61194615-61239025:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2987670898438	2	559.307352	1116.60015	-0.41075	-0.00022974	2.4516	0.0013712	2.0408	0.0011415	559.3085980731477	27.977	0.56999	28.058	27.759	28.329	0.081293					18	13	2	0	0	0	0.024466	1	1544	1544		33.516	0	1	246650	+		51094	25510	35632	35684	56430	56430					0.046515466393657334
MEQLQDETN	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))EQLQDETN_		M(1)EQLQDETN		M(90)EQLQDETN	1	0	1		nc|ENSG00000197978|A6NEM1-2|GOLGA6L9;ENSG00000197978|ENST00000618348|GOLGA6L9	nc|ENSG00000197978|A6NEM1-2|GOLGA6L9	nc|ENSG00000197978|A6NEM1-2|GOLGA6L9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2857055664062	2	583.237518	1164.46048	-0.91813	-0.00053549	-0.15316	-8.9328E-05	-1.0713	-0.00062482	583.2380465848886	55.363	0.29916	55.132	54.891	55.19	-0.23087					14	8	2	0	0	0	0.023061	1	5943	5943		90.37	38.842	1	90280			51095	10078	35633	35685	56431	56431		425			-0.1151690722647345
MEQPQVAKV	9	Unmodified	_MEQPQVAKV_					0	0	0			REV__ENSG00000042980|ENST00000265769|ADAM28	REV__ENSG00000042980|ENST00000265769|ADAM28	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7739868164062	2	515.273509	1028.53247	0.35501	0.00018293	1.6345	0.00084223	1.9895	0.0010252	515.2751305144818	68.824	1.1371	68.581	68.187	69.325	-0.24278					59	27	3	0	0	0	0.26966	1	7992	7992		79.713	5.4575	1	1593100	+		51096	20105	35634	35686	56432	56432					0.019340967085327065
MEQSERHD	8	Unmodified	_MEQSERHD_					0	0	0			REV__KLHL24|p.R103Q|1|0.28|ENSG00000114796|chr3:183650664-183650664|G/A|missense_variant	REV__KLHL24|p.R103Q|1|0.28|ENSG00000114796|chr3:183650664-183650664|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7901000976562	2	516.21418	1030.41381	0.29284	0.00015117	-0.51996	-0.00026841	-0.22712	-0.00011724	516.2140245843708	52.479	0.32055	52.332	52.209	52.53	-0.14723					11	7	2	0	0	0	0.027866	1	5605	5605		71.296	7.9894	1	61212	+		51097	36187	35635	35687	56433	56433					-0.10018302267098989
MEQYSLALY	9	Unmodified	_MEQYSLALY_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.264892578125	2	559.26535	1116.51615	0.34789	0.00019456	-0.17541	-9.8099E-05	0.17248	9.6462E-05	559.2652022903492	80.016	0.71342	79.77	79.278	79.992	-0.2465					31	16	3	0	0	0	0.23085	2	9578	9578;9591		84.916	10.941	1	813490	+		51098	37243	35636	35688	56434;56435	56434					-0.037450292482162695
MEQYSLALY	9	Unmodified	_MEQYSLALY_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2651977539062	2	559.26535	1116.51615	0.10179	5.6927E-05	0.013485	7.5419E-06	0.11527	6.4469E-05	559.2651984765774	80.385	1.1803	80.148	79.916	81.096	-0.23784					56	28	3	0	0	0	0.024292	1	9591	9591		68.787	10.005	1	843960	+		51099	37243	35636	35688	56436	56436					-0.037450292482162695
MEQYSLALY	9	Unmodified	_MEQYSLALY_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2656860351562	2	559.26535	1116.51615	0.2349	0.00013137	0.058554	3.2748E-05	0.29345	0.00016412	559.2652313091266	80.031	0.54608	79.812	79.41	79.957	-0.21923					29	12	3	0	0	0	0.15029	1	9593	9593		99.375	8.7741	1	817110	+		51100	37243	35636	35688	56437	56437					-0.037450292482162695
MEQYSLALY	9	Unmodified	_MEQYSLALY_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.26416015625	2	559.26535	1116.51615	-0.1125	-6.2917E-05	0.27136	0.00015176	0.15886	8.8845E-05	559.2654351022218	79.889	0.79712	79.738	79.152	79.949	-0.15051					38	18	4	0	0	0	0.27161	1	9580	9580		79.451	2.6769	1	731770	+		51101	37243	35636	35688	56438	56438					-0.037450292482162695
MERAANHMSV	10	Unmodified	_MERAANHMSV_					0	0	0			REV__ENST00000475978.1_1_1:249106101-249108957:-|nuORF	REV__ENST00000475978.1_1_1:249106101-249108957:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2792358398438	2	573.26315	1144.51175	-0.19441	-0.00011145	-4.4751	-0.0025654	-4.6695	-0.0026769	573.261122058687	78.145	0.25838	77.883	77.818	78.077	-0.26202					8	5	2	0	0	0	0.03519	1	9313	9313		44.377	1.9027	1	55050	+		51102	26919	35637	35689	56439	56439					-0.05472816942778991
MERELAVTV	9	Unmodified	_MERELAVTV_					0	0	0		ENST00000548713.5_2_12:50135434-50135461:+|nuORF	ENST00000548713.5_2_12:50135434-50135461:+|nuORF	ENST00000548713.5_2_12:50135434-50135461:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2774658203125	2	524.278792	1046.54303	0.42035	0.00022038	-3.6879	-0.0019335	-3.2676	-0.0017131	524.2767562562136	56.71	0.73791	56.485	56.149	56.887	-0.2248					56	18	4	0	0	0	0.15366	1	6148	6148		98.629	0.047388	1	7007200			51103	16554	35638	35690	56440	56440					0.02162079362960867
MERGFAGIK	9	Unmodified	_MERGFAGIK_					0	0	0			REV__ENSG00000100596|ENST00000216484|SPTLC2	REV__ENSG00000100596|ENST00000216484|SPTLC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.2383728027344	2	504.768394	1007.52224	-0.023553	-1.1889E-05	-0.23028	-0.00011624	-0.25383	-0.00012813	504.7680149996052	63.822	0.64596	63.571	63.192	63.838	-0.25141					24	17	2	0	0	0	0.023842	1	7442	7442		20.837	0	1	276740	+		51104	21137	35639	35691	56441	56441					0.01877533773961204
MERGNNLTQ	9	Unmodified	_MERGNNLTQ_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3088989257812	2	531.753472	1061.49239	-0.86991	-0.00046258	-0.062484	-3.3226E-05	-0.9324	-0.0004958	531.7532174765093	38.17	0.36174	37.952	37.755	38.117	-0.21848					14	10	2	0	0	0	0.024438	1	3113	3113		22.58	9.6205	1	204300			51105	8916	35640	35692	56442	56442					-0.035894499620326314
MERKALEM	8	Unmodified	_MERKALEM_					0	0	0		ENST00000574569.1_1_16:67862375-67862787:-|nuORF;ENST00000436104.6_1_16:67862410-67864187:-|nuORF;ENST00000568495.5_1_16:67862172-67864127:-|nuORF;ENST00000569862.5_1_16:67862172-67864187:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF;ENSG00000102901|ENST00000562787|CENPT	ENST00000574569.1_1_16:67862375-67862787:-|nuORF	ENST00000574569.1_1_16:67862375-67862787:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2554626464844	2	504.254262	1006.49397	-1.0409	-0.00052486	3.8077	0.00192	2.7668	0.0013952	504.25583839520186	41.185	1.0291	40.954	40.696	41.725	-0.23029					61	26	4	0	0	0	0.87148	1	3605	3605		53.351	7.3995	1	1253400			51106	2441	35641	35693	56443	56443					-0.009015321976221458
MERLVLPE	8	Unmodified	_MERLVLPE_					0	0	0			REV__ENSG00000177666|ENST00000336615|PNPLA2	REV__ENSG00000177666|ENST00000336615|PNPLA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7898864746094	2	493.770603	985.526652	-0.98295	-0.00048535	-1.0095	-0.00049845	-1.9924	-0.0009838	493.7700074143537	59.799	1.4211	59.878	59.572	60.993	0.079605					65	37	2	0	0	0	0.027866	1	6779	6779		15.642	0	1	2024500	+		51107	27134	35642	35694	56444	56444					0.0333099819687277
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_		M(1)ERM(1)EVSQCN		M(96)ERM(96)EVSQCN	0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	629.7479248046875	2	629.746673	1257.47879	-0.48121	-0.00030304	1.0112	0.0006368	0.52998	0.00033375	629.7472296426367	61.61	0.93024	61.396	61.042	61.972	-0.21375					59	22	4	0	0	0	0.42812	3	6897	6897;6907;6918		95.815	33.708	1	1804600	+		51108	19233	35643	35695	56445;56446;56447	56445		600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_		M(1)ERM(1)EVSQCN		M(85)ERM(85)EVSQCN	0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	629.7474365234375	2	629.746673	1257.47879	-1.4776	-0.0009305	1.6719	0.0010529	0.19436	0.0001224	629.7478313968876	61.526	0.80944	61.348	60.995	61.804	-0.17781					54	19	4	0	0	0	0.52765	1	6900	6900		85.161	13.865	1	1591600	+		51109	19233	35643	35695	56448	56448		600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_		M(1)ERM(1)EVSQCN		M(85)ERM(85)EVSQCN	0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	629.7471923828125	2	629.746673	1257.47879	-0.38174	-0.0002404	0.51265	0.00032284	0.13091	8.244E-05	629.7470510214204	61.69	0.88631	61.433	61.091	61.978	-0.25725					58	21	4	0	0	0	0.52765	2	6906	6906;6921		85.161	16.691	1	1867700	+		51110	19233	35643	35695	56449;56450	56449		600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_					0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	629.746673	1257.47879	0.32417	0.00020415	0.14149	8.9105E-05	0.46567	0.00029325	629.7469415197833	61.173	0.49577	61.173	60.996	61.492	0	-0.13371	-0.0010392	NaN	95.815	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98358	+		51111	19233	35643	35695				600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_					0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	629.746673	1257.47879	0.69893	0.00044015	-0.47896	-0.00030162	0.21997	0.00013853	629.7462164723163	61.532	0.36862	61.306	61.047	61.415	-0.22663	-0.00096011	-0.0018207	NaN	95.815	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117210	+		51112	19233	35643	35695				600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_					0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	629.746673	1257.47879	-0.25669	-0.00016165	0.77322	0.00048694	0.51653	0.00032529	629.7470640144842	61.114	0.40929	61.185	60.985	61.394	0.071125	-0.12175	-0.00024357	NaN	95.815	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94229	+		51113	19233	35643	35695				600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_					0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	629.746673	1257.47879	-0.48121	-0.00030304	1.0112	0.0006368	0.52998	0.00033375	629.7472296426367	61.61	0.93024	61.396	61.042	61.972	-0.21375	0.08937	5.6151E-05	NaN	95.815	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1804600	+		51114	19233	35643	35695				600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_					0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	629.746673	1257.47879	-1.4776	-0.0009305	1.6719	0.0010529	0.19436	0.0001224	629.7478313968876	61.526	0.80944	61.348	60.995	61.804	-0.17781	0.041042	0.00088835	NaN	95.815	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1591600	+		51115	19233	35643	35695				600;601			-0.13964811847768033
MERMEVSQCN	10	2 Oxidation (M)	_M(Oxidation (M))ERM(Oxidation (M))EVSQCN_					0	0	2			REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	REV__CACNA1A|p.S2062C|1|0.11|ENSG00000141837|chr19:13212388-13212388|G/C|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	629.746673	1257.47879	-0.38174	-0.0002404	0.51265	0.00032284	0.13091	8.244E-05	629.7470510214204	61.69	0.88631	61.433	61.091	61.978	-0.25725	0.12601	-0.00057176	NaN	95.815	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1867700	+		51116	19233	35643	35695				600;601			-0.13964811847768033
MERMFPVEV	9	Unmodified	_MERMFPVEV_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.2769775390625	2	569.275195	1136.53584	-1.0669	-0.00060736	3.688	0.0020995	2.6211	0.0014921	569.2771577721113	79.614	2.4603	79.633	79.233	81.693	0.018669					115	59	4	0	0	0	0.48817	1	9779	9779		60.118	5.3419	1	2642900	+		51117	28972	35644	35696	56451	56451					-0.026969765091052977
MERMFPVEV	9	Unmodified	_MERMFPVEV_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.2764282226562	2	569.275195	1136.53584	-1.0894	-0.00062019	4.0965	0.0023321	3.0071	0.0017119	569.2773502290091	82.352	2.2873	82.378	81.7	83.987	0.025711					132	53	4	0	0	0	0.14024	2	10229	10229;10285		101.6	8.4052	1	1981700	+		51118	28972	35644	35696	56452;56453	56452					-0.026969765091052977
MERSPDVSPG	10	Unmodified	_MERSPDVSPG_					0	0	0		nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7971801757812	2	537.747856	1073.48116	-0.36916	-0.00019851	3.9069	0.0021009	3.5378	0.0019024	537.7498307106357	76.111	0.90054	76.123	75.752	76.653	0.011642					59	22	3	0	0	0	0.03519	1	9284	9284		58.23	10.573	1	1376400			51119	2555	35645	35697	56454	56454					-0.05264272056160735
MERSPDVSPG	10	Unmodified	_MERSPDVSPG_					0	0	0		nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.74951171875	2	537.747856	1073.48116	-0.53749	-0.00028903	4.1894	0.0022529	3.6519	0.0019638	537.7499648979381	76.301	0.92994	76.033	75.665	76.595	-0.26806					62	22	4	0	0	0	0.77808	1	9033	9033		62.107	1.1355	1	1591200			51120	2555	35645	35697	56455	56455					-0.05264272056160735
MERSPPQSPG	10	Unmodified	_MERSPPQSPG_					0	0	0		ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.7957763671875	2	543.255848	1084.49714	-0.60817	-0.00033039	-3.0029	-0.0016313	-3.6111	-0.0019617	543.2539211129646	71.316	1.1276	71.327	70.896	72.024	0.010735					60	29	4	0	0	0	0.03519	1	8637	8637		63.534	7.1001	1	958120			51121	10046	35646	35698	56456	56456					-0.041725658192717674
MESFSSHALE	10	Unmodified	_MESFSSHALE_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.2486572265625	2	569.247689	1136.48082	-1.106	-0.00062959	3.5872	0.002042	2.4812	0.0014124	569.2495524410223	62.795	0.70145	62.556	62.394	63.096	-0.23926					38	17	3	0	0	0	0.45367	1	7311	7311		93.195	0	1	2823800	+		51122	24950	35647	35699	56457	56457					-0.08195691776040803
MESHKPLGF	9	Unmodified	_MESHKPLGF_					0	0	0		ENST00000380036.8_1_9:27109493-27109529:+|nuORF	ENST00000380036.8_1_9:27109493-27109529:+|nuORF	ENST00000380036.8_1_9:27109493-27109529:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2625122070312	2	523.260402	1044.50625	0.0075344	3.9424E-06	2.4751	0.0012951	2.4826	0.001299	523.2615847064661	106.53	0.91643	106.53	106.18	107.1	0.0018311					75	30	5	0	0	0	0.59099	1	13601	13601		53.351	0.41475	1	1308300			51123	13297	35648	35700	56458	56458					-0.014221724629123855
MESIGLHVIV	10	Unmodified	_MESIGLHVIV_					0	0	0		ENST00000314138.10_1_11:8709525-8709774:+|nuORF	ENST00000314138.10_1_11:8709525-8709774:+|nuORF	ENST00000314138.10_1_11:8709525-8709774:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3026733398438	2	549.30481	1096.59507	-0.59819	-0.00032859	-2.9104	-0.0015987	-3.5086	-0.0019273	549.3031841848409	78.78	1.6602	78.798	78.441	80.101	0.018677					119	39	6	0	0	0	0.941	1	9694	9694		51.335	0.14276	1	13961000			51124	12114	35649	35701	56459	56459					0.05063242776714105
MESKMIAAIH	10	Oxidation (M)	_MESKM(Oxidation (M))IAAIH_		M(0.147)ESKM(0.853)IAAIH		M(-7.6)ESKM(7.6)IAAIH	0	0	1		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ARHGAP32|p.Y1927Hfs*7|1|0.04|ENSG00000134909|chr11:128969387-128969393|AGCATAT/-|frameshift_variant;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.78564453125	2	573.785927	1145.5573	-0.62207	-0.00035694	-0.03171	-1.8195E-05	-0.65378	-0.00037513	573.7857492201204	70.452	1.039	70.464	70.202	71.24	0.012421					49	26	3	0	0	0	0.71272	1	8439	8439		66.429	6.311	2	3020800			51125	123	35650	35702	56460	56460		2			-0.009655914803943233
MESLFLFSI	9	Unmodified	_MESLFLFSI_					0	0	0		ENST00000335281.8_1_14:52434779-52434878:+|nuORF	ENST00000335281.8_1_14:52434779-52434878:+|nuORF	ENST00000335281.8_1_14:52434779-52434878:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.302001953125	2	543.780636	1085.54672	0.91075	0.00049525	2.3331	0.0012687	3.2438	0.0017639	543.7815287714693	74.045	0.38553	74.045	73.913	74.298	0					10	8	2	0	0	0	0.022411	1	9074	9074		101.6	7.5943	1	125770			51126	12391	35651	35703	56461	56461					0.007367491368086121
MESLSWHSY	9	Unmodified	_MESLSWHSY_					0	0	0		ENST00000495936.5_1_7:102074039-102076773:+|nuORF;ENST00000482237.5_1_7:102073700-102076773:+|nuORF	ENST00000495936.5_1_7:102074039-102076773:+|nuORF	ENST00000495936.5_1_7:102074039-102076773:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.242431640625	2	570.244949	1138.47534	-0.19543	-0.00011144	-2.9995	-0.0017105	-3.195	-0.0018219	570.2431044179693	77.561	0.84903	77.399	77.059	77.908	-0.16196					44	19	3	0	0	0	0.70186	1	9214	9214		45.952	6.6991	1	1351900			51127	15251	35652	35704	56462	56462					-0.08835370567817336
MESQQILPDG	10	Unmodified	_MESQQILPDG_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;nc|ENSG00000257335|O43451-1|MGAM	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.2662353515625	2	559.263339	1116.51212	0.50649	0.00028326	3.2238	0.001803	3.7303	0.0020862	559.2649405171001	83.554	3.4162	83.342	81.206	84.622	-0.21159					185	79	3	0	0	0	0.42812	1	10103	10103		95.815	2.6719	1	711010			51128	10919	35653	35705	56463	56463					-0.04147118741934719
MESSPYEVLV	10	Unmodified	_MESSPYEVLV_					0	0	0			REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	577.274658203125	2	577.275915	1152.53728	-0.46181	-0.00026659	-2.5284	-0.0014596	-2.9902	-0.0017262	577.2744396322079	79.366	1.2006	79.385	79.028	80.229	0.018677					61	28	4	0	0	0	0.67706	1	9770	9770		68.787	2.3575	1	889420	+		51129	30371	35654	35706	56464	56464					-0.032890639393599486
MESSPYEVLV	10	Unmodified	_MESSPYEVLV_					0	0	0			REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.275915	1152.53728	-1.3124	-0.0007576	-1.5112	-0.00087236	-2.8235	-0.00163	577.2749678562009	79.369	1.128	79.369	79.077	80.205	0	0.03334	0.00069761	NaN	68.787	56	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506610	+		51130	30371	35654	35706							-0.032890639393599486
MESSPYEVLV	10	Unmodified	_MESSPYEVLV_					0	0	0			REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	577.275915	1152.53728	-1.1929	-0.00068861	-1.6372	-0.00094509	-2.83	-0.0016337	577.2748529395689	79.523	1.1253	79.351	79.029	80.154	-0.17226	0.015591	0.00055215	NaN	68.787	61	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645980	+		51131	30371	35654	35706							-0.032890639393599486
MESSPYEVLV	10	Unmodified	_MESSPYEVLV_					0	0	0			REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	577.275915	1152.53728	-0.46181	-0.00026659	-2.5284	-0.0014596	-2.9902	-0.0017262	577.2744396322079	79.366	1.2006	79.385	79.028	80.229	0.018677	0.049328	-0.00047685	NaN	68.787	61	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	889420	+		51132	30371	35654	35706							-0.032890639393599486
MESSPYEVLV	10	Unmodified	_MESSPYEVLV_					0	0	0			REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	577.275915	1152.53728	0.61812	0.00035683	-3.4021	-0.001964	-2.784	-0.0016071	577.274305827887	79.53	0.95807	79.283	78.864	79.822	-0.24651	-0.052316	-0.0014856	NaN	68.787	25	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100480	+		51133	30371	35654	35706							-0.032890639393599486
MESSPYEVLV	10	Unmodified	_MESSPYEVLV_					0	0	0			REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.275915	1152.53728	-0.18359	-0.00010598	-3.1481	-0.0018173	-3.3316	-0.0019233	577.2741096757046	79.509	0.70337	79.29	78.914	79.618	-0.21923	-0.045943	-0.0011923	NaN	68.787	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111310	+		51134	30371	35654	35706							-0.032890639393599486
MESTVVHIV	9	Unmodified	_MESTVVHIV_					0	0	0			REV__nc|ENSG00000044115|P35221-3|CTNNA1	REV__nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	507.76806	1013.52157	1.4038	0.00071281	-1.8853	-0.00095728	-0.48147	-0.00024447	507.76708504622036	59.318	1.0499	59.118	58.78	59.83	-0.20013					101	28	5	0	0	0	0.52323	1	6762	6762		57.811	2.3071	1	25911000	+		51135	20111	35655	35707	56465	56465					0.015346943342592567
MESYCVRA	8	Unmodified	_MESYCVRA_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7353515625	2	479.709688	957.404823	-0.21678	-0.00010399	2.1995	0.0010551	1.9827	0.00095114	479.7103500031322	60.403	0.4964	60.189	59.924	60.421	-0.21339					18	12	2	0	0	0	0.027866	1	6900	6900		21.96	0	1	145080			51136	3453	35656	35708	56466	56466					-0.0755836715715077
METAKLVEV	9	Unmodified	_METAKLVEV_					0	0	0			REV__nc|ENSG00000177469|Q6NZI2-3|CAVIN1	REV__nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.2792663574219	2	510.275718	1018.53688	-1.3871	-0.00070779	-2.5161	-0.0012839	-3.9032	-0.0019917	510.27443324848696	90.53	2.2009	90.53	90.093	92.294	0					131	52	4	0	0	0	0.15366	1	11524	11524		98.629	5.4339	1	32708000	+		51137	27116	35657	35709	56467	56467					0.028355611314623275
METCLKRED	9	Unmodified	_METCLKRED_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;CD163L1|p.E1410K|1|0.22|ENSG00000177675|chr12:7367287-7367287|C/T|missense_variant;ENST00000543841.5_1_12:7510002-7519946:-|nuORF	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7940063476562	2	562.757366	1123.50018	-0.32684	-0.00018393	1.0993	0.00061863	0.77244	0.0004347	562.7578426185089	52.358	0.42733	52.174	51.927	52.354	-0.18404					14	10	2	0	0	0	0.024484	1	5447	5447		30.318	3.6248	1	80385			51138	8761	35658	35710	56468	56468					-0.05663058756749706
METFEFLN	8	Unmodified	_METFEFLN_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7740478515625	2	515.731143	1029.44773	-0.076789	-3.9602E-05	2.7733	0.0014303	2.6965	0.0013907	515.7324247912417	69.053	0.82242	68.822	68.559	69.382	-0.23048					30	19	2	0	0	0	0.027866	1	7975	7975		53.351	0	1	642360			51139	7462	35659	35711	56469	56469					-0.065812738280556
METKVIDGEAD	11	Unmodified	_METKVIDGEAD_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.18804931640625	3	403.188549	1206.54382	0.50857	0.00020505	-1.9664	-0.00079281	-1.4578	-0.00058776	403.1877335838278	36.603	0.63497	36.398	36.127	36.762	-0.20518					49	15	4	0	0	0	1.017	1	2899	2899		33.039	1.4051	1	2779000	+		51140	20649	35660	35712	56470	56470					-0.05119170778630178
METKVVDMV	9	Unmodified	_METKVVDMV_					0	0	0		ENST00000435711.5_2_2:178081475-178083842:+|nuORF	ENST00000435711.5_2_2:178081475-178083842:+|nuORF	ENST00000435711.5_2_2:178081475-178083842:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.78955078125	2	526.261753	1050.50895	0.10041	5.284E-05	1.557	0.00081938	1.6574	0.00087222	526.2625342967036	76.126	0.36513	75.958	75.816	76.181	-0.16854					12	8	2	0	0	0	0.024427	1	9024	9024		42.396	0	1	114590			51141	14265	35661	35713	56471	56471					-0.014280851202784106
METLPYLQ	8	Unmodified	_METLPYLQ_					0	0	0		nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.75128173828125	2	497.749336	993.484119	0.43588	0.00021696	2.7984	0.0013929	3.2342	0.0016098	497.7506876229669	40.278	0.70614	40.278	39.951	40.657	0					61	19	4	0	0	0	0.42327	2	3543	3543;3557		94.006	3.2298	1	7138300			51142	18661	35662	35714	56472;56473	56472					-0.012883969313520538
METLPYLQ	8	Unmodified	_METLPYLQ_					0	0	0		nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7506103515625	2	497.749336	993.484119	0.2229	0.00011095	3.0662	0.0015262	3.2891	0.0016371	497.75082447267954	40.365	0.76008	40.253	39.904	40.664	-0.11223					71	20	5	0	0	0	0.44658	1	3531	3531		90.777	2.1338	1	6716300			51143	18661	35662	35714	56474	56474					-0.012883969313520538
METLSVFRS	9	Unmodified	_METLSVFRS_					0	0	0		nc|ENSG00000185946|Q96LT9-2|RNPC3;ENSG00000185946|ENST00000423855|RNPC3;ENST00000533834.1_1_1:104088871-104088976:+|nuORF;ENST00000605810.1_1_3:70174416-70174620:-|nuORF	nc|ENSG00000185946|Q96LT9-2|RNPC3	nc|ENSG00000185946|Q96LT9-2|RNPC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2802124023438	2	535.270967	1068.52738	-0.62893	-0.00033665	0.5741	0.0003073	-0.054832	-2.935E-05	535.2713220243669	53.891	0.9819	53.693	53.422	54.404	-0.19739					37	28	2	0	0	0	0.024523	1	5743	5743		29.15	9.1528	1	356460			51144	9493	35663	35715	56475	56475					-0.004142071540627512
METLVREKG	9	Unmodified	_METLVREKG_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3111572265625	2	531.784241	1061.55393	-0.31043	-0.00016508	4.1947	0.0022307	3.8843	0.0020656	531.7862983618389	70.455	0.32132	70.183	69.911	70.232	-0.27185					12	7	2	0	0	0	0.024466	1	8165	8165		31.53	0	1	281000			51145	6624	35664	35716	56476	56476					0.025614817372570542
METLVREKG	9	Unmodified	_METLVREKG_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.784241	1061.55393	0.33713	0.00017928	2.7286	0.001451	3.0657	0.0016303	532.2874299461107	70.082	0.20486	69.789	69.673	69.878	-0.29291	-0.28772	-0.0015915	NaN	44.377	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51274			51146	6624	35664	35716							0.025614817372570542
METLVREKG	9	Unmodified	_METLVREKG_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.784241	1061.55393	-0.48405	-0.00025741	4.6538	0.0024748	4.1697	0.0022174	531.7866120808328	70.425	0.47162	70.168	69.81	70.282	-0.25713	0.09115	0.00045606	NaN	44.377	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493840			51147	6624	35664	35716							0.025614817372570542
METLVREKG	9	Unmodified	_METLVREKG_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.784241	1061.55393	0.11881	6.3183E-05	4.2014	0.0022343	4.3202	0.0022974	531.7866042073969	70.381	0.47382	70.166	69.814	70.288	-0.21425	0.08996	-2.5021E-05	NaN	44.377	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367130			51148	6624	35664	35716							0.025614817372570542
METNAATLIP	10	Unmodified	_METNAATLIP_					0	0	0		ENST00000538029.1_1_12:9162377-9162479:+|nuORF	ENST00000538029.1_1_12:9162377-9162479:+|nuORF	ENST00000538029.1_1_12:9162377-9162479:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.281982421875	2	530.7708	1059.52705	0.4152	0.00022038	-3.6831	-0.0019549	-3.2679	-0.0017345	530.7691364331538	60.11	0.96623	59.912	59.214	60.181	-0.19742					29	24	2	0	0	0	0.03519	1	6614	6614		34.173	0	1	146300			51149	16386	35665	35717	56477	56477					-0.00033626873914727184
METPANEMTP	10	Unmodified	_METPANEMTP_					0	0	0		ENST00000509583.1_1_4:17585128-17586760:+|nuORF;ENST00000508014.5_1_4:17585059-17587679:+|nuORF;nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3	ENST00000509583.1_1_4:17585128-17586760:+|nuORF	ENST00000509583.1_1_4:17585128-17586760:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7366943359375	2	560.736099	1119.45765	0.029329	1.6446E-05	1.2663	0.00071004	1.2956	0.00072648	560.7365794903599	88.57	0.75761	88.438	88.194	88.952	-0.13135					37	17	3	0	0	0	1.0508	1	10817	10817		39.253	0	1	699860			51150	726	35666	35718	56478	56478					-0.09730453885003953
METTATLLR	9	Unmodified	_METTATLLR_					0	0	0		SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.784912109375	2	518.278792	1034.54303	-0.069934	-3.6245E-05	-3.2865	-0.0017033	-3.3564	-0.0017395	518.2764412490584	71.756	0.73571	71.766	71.433	72.169	0.0097733					36	19	3	0	0	0	0.024447	1	8687	8687		32.812	3.6629	1	388630			51151	37876	35667	35719	56479	56479					0.027140793629769178
METTATLLR	9	Unmodified	_METTATLLR_					0	0	0		SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.278792	1034.54303	0.10122	5.2458E-05	-2.7187	-0.0014091	-2.6175	-0.0013566	518.2772195234562	71.597	0.53028	71.597	71.339	71.869	0	-0.092336	0.00033376	NaN	32.812	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351360			51152	37876	35667	35719							0.027140793629769178
METTATLLR	9	Unmodified	_METTATLLR_					0	0	0		SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	SKIV2L|p.A1229T|1|0.06|ENSG00000204351|chr6:31969659-31969659|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.278792	1034.54303	0.34365	0.00017811	-3.0592	-0.0015855	-2.7156	-0.0014074	518.2769149760518	71.994	0.41032	71.706	71.502	71.912	-0.28858	0.016173	-1.9189E-05	NaN	32.812	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389740			51153	37876	35667	35719							0.027140793629769178
METTGRKET	9	Unmodified	_METTGRKET_					0	0	0		ENST00000532922.1_1_11:1594694-1618573:+|nuORF	ENST00000532922.1_1_11:1594694-1618573:+|nuORF	ENST00000532922.1_1_11:1594694-1618573:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2938842773438	2	526.755681	1051.49681	-0.73346	-0.00038636	-2.7963	-0.001473	-3.5298	-0.0018593	526.7542089730246	52.446	0.47348	52.327	52.086	52.56	-0.11876					19	11	2	0	0	0	0.024427	1	5413	5413		26.693	7.5894	1	497630			51154	16303	35668	35720	56480	56480					-0.026879855391143792
METTNLSFF	9	Unmodified	_METTNLSFF_					0	0	0		ENST00000304056.8_1_7:32908996-32909044:-|nuORF	ENST00000304056.8_1_7:32908996-32909044:-|nuORF	ENST00000304056.8_1_7:32908996-32909044:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8059692382812	2	545.2497	1088.48485	-0.22279	-0.00012148	0.52911	0.0002885	0.30632	0.00016702	545.7510940426339	72.402	1.328	72.125	71.471	72.799	-0.2769					52	31	3	0	0	0	0.024319	1	8564	8564		39.253	0	1	176840			51155	11974	35669	35721	56481	56481					-0.055856022823036255
METTSLYPLD	10	Unmodified	_METTSLYPLD_					0	0	0			REV__nc|ENSG00000188895|Q68DK7-3|MSL1	REV__nc|ENSG00000188895|Q68DK7-3|MSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2705688476562	2	585.273372	1168.53219	-0.017655	-1.0333E-05	-2.9648	-0.0017352	-2.9825	-0.0017456	585.2713254644489	84.937	1.2965	84.8	84.449	85.745	-0.13753					67	30	3	0	0	0	0.96965	1	10264	10264		49.442	1.7842	1	797850	+		51156	28076	35670	35722	56482	56482					-0.045333678019687795
MEVATHLQVS	10	Unmodified	_MEVATHLQVS_					0	0	0			REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.7813110351562	2	557.781699	1113.54884	0.032311	1.8022E-05	0.75749	0.00042251	0.7898	0.00044053	557.7819791361528	86.344	0.7426	86.207	85.875	86.618	-0.13734					42	16	3	0	0	0	0.96822	1	10479	10479		49.536	1.8787	1	702540	+		51157	28420	35671	35723	56483	56483					-0.0033882212535445433
MEVCTVKFD	9	Unmodified	_MEVCTVKFD_					0	0	0			REV__nc|ENSG00000152894|Q15262|PTPRK	REV__nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2457885742188	2	536.246103	1070.47765	-0.78009	-0.00041832	1.9974	0.0010711	1.2174	0.0006528	536.2470433581592	70.21	2.4621	70.222	69.831	72.293	0.012421					97	64	2	0	0	0	0.89441	1	8430	8430		32.812	3.6629	1	4146200	+		51158	24868	35672	35724	56484	56484					-0.054766581543617576
MEVDEKKP	8	Unmodified	_MEVDEKKP_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;ENST00000573672.1_1_16:3817649-3820675:-|nuORF	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79705810546875	2	488.244418	974.474282	-0.60056	-0.00029322	0.21542	0.00010518	-0.38515	-0.00018805	488.2443227416269	76	0.53062	76	75.659	76.189	0					23	13	2	0	0	0	0.027866	1	9300	9300		29.15	0	1	176960			51159	587	35673	35725	56485	56485					-0.013975849367398041
MEVDHDRQV	9	Unmodified	_MEVDHDRQV_					0	0	0		ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;ENSG00000172932|ENST00000511455|ANKRD13D;ENST00000506531.5_1_11:67057839-67066817:+|nuORF;nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.756591796875	2	564.758755	1127.50296	0.27093	0.00015301	-4.0069	-0.0022629	-3.736	-0.0021099	564.756335232084	64.198	1.1374	64.198	63.917	65.055	0					64	30	3	0	0	0	0.19099	1	7563	7563		90.37	13.596	1	1845600			51160	91	35674	35726	56486	56486					-0.05569467307623199
MEVDHDRQV	9	Unmodified	_MEVDHDRQV_					0	0	0		ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;ENSG00000172932|ENST00000511455|ANKRD13D;ENST00000506531.5_1_11:67057839-67066817:+|nuORF;nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.7565307617188	2	564.758755	1127.50296	-0.93539	-0.00052827	-2.7427	-0.001549	-3.6781	-0.0020772	564.7570836429716	64.513	1.0112	64.251	63.939	64.95	-0.2626					58	26	3	0	0	0	0.2101	1	7569	7569		87.696	7.9839	1	1835700			51161	91	35674	35726	56487	56487					-0.05569467307623199
MEVDHDRQV	9	Unmodified	_MEVDHDRQV_					0	0	0		ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant;ENSG00000172932|ENST00000511455|ANKRD13D;ENST00000506531.5_1_11:67057839-67066817:+|nuORF;nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	ANKRD13D|p.M386Afs*31|1|0.22|ENSG00000172932|chr11:67301554-67301560|GCATGGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.7564697265625	2	564.758755	1127.50296	0.11279	6.37E-05	-3.9867	-0.0022515	-3.8739	-0.0021878	564.756394656286	64.209	0.96474	64.254	64.011	64.975	0.045502					59	25	3	0	0	0	0.28753	1	7472	7472		77.318	13.11	1	2015300			51162	91	35674	35726	56488	56488					-0.05569467307623199
MEVDQQNVFV	10	Unmodified	_MEVDQQNVFV_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.7868041992188	2	604.784438	1207.55432	0.49624	0.00030012	2.963	0.001792	3.4593	0.0020921	604.7860799385778	74.173	1.2844	74.173	73.871	75.155	0					84	30	4	0	0	0	0.64538	1	9072	9072		71.877	2.2498	1	2331600	+		51163	26057	35675	35727	56489	56489					-0.04115143333569904
MEVDQQNVFV	10	Unmodified	_MEVDQQNVFV_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.7869262695312	2	604.784438	1207.55432	-0.057425	-3.473E-05	3.4009	0.0020568	3.3435	0.0020221	604.7863160456002	74.449	1.3496	74.19	73.902	75.252	-0.25887					69	32	4	0	0	0	0.45367	2	9097	9083;9097		93.195	24.409	1	2432000	+		51164	26057	35675	35727	56490;56491	56491					-0.04115143333569904
MEVDQQNVFV	10	Unmodified	_MEVDQQNVFV_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.7859497070312	2	604.784438	1207.55432	-0.50155	-0.00030333	4.0252	0.0024344	3.5237	0.0021311	604.7866091830382	74.421	1.8167	74.146	73.917	75.734	-0.27573					85	43	4	0	0	0	0.60198	1	8781	8781		76.774	4.8967	1	2609500	+		51165	26057	35675	35727	56492	56492					-0.04115143333569904
MEVEVLGMAI	10	2 Oxidation (M)	_M(Oxidation (M))EVEVLGM(Oxidation (M))AI_		M(1)EVEVLGM(1)AI		M(100)EVEVLGM(100)AI	0	0	2		ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.30859375	2	562.272318	1122.53008	-0.50175	-0.00028212	-3.02	-0.001698	-3.5217	-0.0019802	562.2703737131337	68.89	0.64557	68.89	68.52	69.166	0					29	16	2	0	0	0	0.03519	1	8287	8287		102.77	33.146	1	137180			51166	7920	35676	35728	56493	56493		326;327			-0.0262811981140203
MEVGRARPA	9	Unmodified	_MEVGRARPA_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7641906738281	2	493.763643	985.512734	2.0619	0.0010181	-2.3335	-0.0011522	-0.27164	-0.00013412	493.7622998646813	74.275	0.91924	74.275	73.955	74.875	0					57	21	4	0	0	0	0.4752	1	9103	9103		60.972	2.19	1	1202600			51167	18099	35677	35729	56494	56494					0.01939765488430112
MEVGRARPA	9	Unmodified	_MEVGRARPA_					0	0	0		nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	nc|ENSG00000084112|Q8WYL5-2|SSH1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	493.763643	985.512734	0.39168	0.0001934	-0.72097	-0.00035599	-0.32929	-0.00016259	493.7630040976331	74.545	0.96027	74.286	73.944	74.904	-0.25887	0.003168	0.0002483	NaN	60.972	67	22	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1153900			51168	18099	35677	35729							0.01939765488430112
MEVKLDGETT	10	Unmodified	_MEVKLDGETT_					0	0	0			REV__ENSG00000188211|ENST00000338965|NCR3LG1	REV__ENSG00000188211|ENST00000338965|NCR3LG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.3140258789062	2	561.770997	1121.52744	0.62844	0.00035304	-3.3603	-0.0018877	-2.7318	-0.0015347	561.7690451901111	70.646	0.85083	70.353	70.219	71.07	-0.29291					37	21	2	0	0	0	0.03519	1	8543	8543		42.864	0	1	461090	+		51169	28020	35678	35730	56495	56495					-0.028462519447430168
MEVKVMELKL	10	Unmodified	_MEVKVMELKL_					0	0	0		ENST00000260605.12_1_2:44001254-44010677:+|nuORF;ENST00000496980.6_1_2:44001254-44008803:+|nuORF	ENST00000260605.12_1_2:44001254-44010677:+|nuORF	ENST00000260605.12_1_2:44001254-44010677:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.5870056152344	3	407.231144	1218.6716	0.38503	0.0001568	-3.7451	-0.0015251	-3.3601	-0.0013683	407.22984692962706	25.141	0.38921	24.97	24.692	25.081	-0.17078					11	8	2	0	0	0	0.03519	1	1139	1139		31.634	9.8538	1	66999			51170	11452	35679	35731	56496	56496					0.07101298281713753
MEVLKNAVK	9	Unmodified	_MEVLKNAVK_					0	0	0		ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7625122070312	2	516.299527	1030.5845	0.0039881	2.0591E-06	3.5483	0.001832	3.5523	0.0018341	516.8043682409076	67.86	0.82947	67.572	67.307	68.136	-0.28834					26	20	2	0	0	0	0.022587	1	8049	8049		96.19	0	1	336340			51171	10751	35680	35732	56497	56497					0.07043260122304673
MEVLSPSSLA	10	Unmodified	_MEVLSPSSLA_					0	0	0		ENST00000603624.1_1_9:138360069-138360393:-|nuORF	ENST00000603624.1_1_9:138360069-138360393:-|nuORF	ENST00000603624.1_1_9:138360069-138360393:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.265380859375	2	517.26535	1032.51615	-0.75912	-0.00039266	0.55902	0.00028916	-0.2001	-0.0001035	517.2655387136089	57.086	0.79276	57.181	56.815	57.608	0.095306					61	21	4	0	0	0	0.74632	1	6349	6349		64.207	2.0999	1	4951700			51172	17547	35681	35733	56498	56498					0.0011897075178239902
MEVMLPREE	9	Unmodified	_MEVMLPREE_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.2684936523438	2	567.270109	1132.52567	-0.8261	-0.00046862	-2.0609	-0.0011691	-2.887	-0.0016377	567.2688417805026	54.817	0.45412	54.817	54.524	54.979	0					33	12	3	0	0	0	0.23085	1	6028	6028		84.916	2.165	1	2555100			51173	4917	35682	35734	56499	56499					-0.035295842343430195
MEVRNNYIP	9	Unmodified	_MEVRNNYIP_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.7947387695312	2	568.281866	1134.54918	0.61997	0.00035232	-0.038012	-2.1601E-05	0.58196	0.00033072	568.282792286857	72.753	0.16222	72.472	72.344	72.506	-0.28124					5	3	2	0	0	0	0.024405	1	8825	8825		53.351	24.181	1	48808	+		51174	20677	35683	35735	56500	56500					-0.012714024054957918
MEVSMVGGVY	10	Unmodified	_MEVSMVGGVY_					0	0	0			REV__nc|ENSG00000172456|Q96C11-4|FGGY	REV__nc|ENSG00000172456|Q96C11-4|FGGY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2477416992188	2	536.246103	1070.47765	-0.020473	-1.0978E-05	1.3163	0.00070587	1.2958	0.00069489	536.2466895998014	70.114	2.1538	70.114	69.75	71.904	0					81	57	2	0	0	0	1.0781	2	8520	8491;8520		35.618	6.3009	1	5560700	+		51175	26671	35684	35736	56501;56502	56502					-0.054766581543617576
MEVTLISSN	9	Unmodified	_MEVTLISSN_					0	0	0			REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF	REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.25054931640625	2	497.2497	992.484847	-0.18209	-9.0543E-05	1.4736	0.00073276	1.2915	0.00064222	497.2503145705476	25.202	1.2133	25.031	24.558	25.771	-0.17078					59	28	4	0	0	0	0.53979	1	1159	1159		56.721	8.8055	1	1557400	+		51176	30728	35685	35737	56503	56503					-0.01169602282300275
MEVYSRYME	9	Unmodified	_MEVYSRYME_					0	0	0			REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	REV__nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	604.28515625	2	604.259742	1206.50493	-0.30859	-0.00018647	-0.5788	-0.00034975	-0.8874	-0.00053622	604.758946839014	30.408	0.20383	30.258	30.14	30.344	-0.14952					6	4	2	0	0	0	0.024438	1	1912	1912		45.952	19.259	1	36152	+		51177	22897	35686	35738	56504	56504					-0.09006174614000884
MEWEDHIRS	9	Unmodified	_MEWEDHIRS_					0	0	0		ENST00000467290.1_1_X:103375415-103375493:-|nuORF	ENST00000467290.1_1_X:103375415-103375493:-|nuORF	ENST00000467290.1_1_X:103375415-103375493:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	601.27734375	2	601.76658	1201.51861	0.22108	0.00013304	3.6343	0.002187	3.8554	0.00232	601.7710924676124	84.323	0.76712	84.12	83.82	84.587	-0.20329					27	17	3	0	0	0	0.024495	1	10216	10216		34.173	7.4796	1	286070			51178	14833	35687	35739	56505	56505					-0.07409180790546088
MEWGNLLI	8	Unmodified	_MEWGNLLI_					0	0	0		ENST00000332118.10_1_11:126135048-126135218:-|nuORF	ENST00000332118.10_1_11:126135048-126135218:-|nuORF	ENST00000332118.10_1_11:126135048-126135218:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	488.249755859375	2	488.252046	974.489538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.949	1	28.949	28.449	29.449	0								0	0	0	0.5271	1	1729	1729		53.351	3.3269	1				51179	12351	35688	35740	56506	56506					0.0012732665111343522
MEWRTLVHA	9	Unmodified	_MEWRTLVHA_					0	0	0			REV__ENSG00000146205|ENST00000674324|ANO7	REV__ENSG00000146205|ENST00000674324|ANO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.7669067382812	2	571.792401	1141.57025	-0.049445	-2.8272E-05	-1.4649	-0.00083761	-1.5143	-0.00086588	571.7912764636242	47.119	1.3215	47.022	46.719	48.04	-0.096649					46	35	2	0	0	0	0.024495	1	4724	4724		26.693	4.733	1	206430	+		51180	24467	35689	35741	56507	56507					0.005126076940086932
MEWRTLVHA	9	Unmodified	_MEWRTLVHA_					0	0	0			REV__ENSG00000146205|ENST00000674324|ANO7	REV__ENSG00000146205|ENST00000674324|ANO7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	571.792401	1141.57025	0.14865	8.4999E-05	-2.1299	-0.0012178	-1.9812	-0.0011328	571.7912011589274	47.563	0.87193	47.294	46.73	47.601	-0.26939	0.14807	2.0171E-05	NaN	42.396	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179590	+		51181	24467	35689	35741							0.005126076940086932
MEWVAFLEN	9	Unmodified	_MEWVAFLEN_					0	0	0			REV__ENST00000591863.1_2_19:33460976-33461114:-|nuORF	REV__ENST00000591863.1_2_19:33460976-33461114:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.2493896484375	2	569.765517	1137.51648	-1.2722	-0.00072485	3.5951	0.0020483	2.3229	0.0013235	569.7677061567128	63.016	0.76378	63.016	62.572	63.336	0					33	19	2	0	0	0	0.022756	1	7287	7287		90.777	0	1	146400	+		51182	35732	35690	35742	56508	56508					-0.04677609528357607
MEWVAFLEN	9	Unmodified	_MEWVAFLEN_					0	0	0			REV__ENST00000591863.1_2_19:33460976-33461114:-|nuORF	REV__ENST00000591863.1_2_19:33460976-33461114:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.2486572265625	2	569.765517	1137.51648	-0.23028	-0.00013121	3.2622	0.0018587	3.0319	0.0017275	569.7674312643685	63.111	1.0525	62.872	62.654	63.707	-0.23926					44	27	2	0	0	0	0.022756	1	7311	7311		102.77	38.566	1	178350	+		51183	35732	35690	35742	56509	56509					-0.04677609528357607
MEYIKSLD	8	Unmodified	_MEYIKSLD_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7901306152344	2	499.746793	997.479033	0.83009	0.00041484	-0.76091	-0.00038026	0.069177	3.4571E-05	499.746315072557	70.818	0.91312	70.525	70.118	71.031	-0.29291					41	25	3	0	0	0	0.027866	1	8494	8494		55.504	26.355	1	625050	+		51184	21154	35691	35743	56510	56510					-0.0198070079397894
MFAHSCWNRN	10	Unmodified	_MFAHSCWNRN_					0	0	0		chr3:136958201-136959509|422|10.03|0.45|4.49|+|1|IL20RB,None|1	chr3:136958201-136959509|422|10.03|0.45|4.49|+|1|IL20RB,None|1	chr3:136958201-136959509|422|10.03|0.45|4.49|+|1|IL20RB,None|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.26611328125	2	633.268767	1264.52298	-0.082153	-5.2025E-05	-4.4231	-0.002801	-4.5053	-0.002853	633.2661262132405	32.046	1.1928	32.046	31.71	32.903	0					89	30	5	0	0	0	0.98754	1	2175	2175		47.657	6.2307	1	3955700			51185	388	35692	35744	56511	56511					-0.09869994848645547
MFAMRILDA	9	Unmodified	_MFAMRILDA_					0	0	0			REV__nc|ENSG00000129493|Q86XA9|HEATR5A	REV__nc|ENSG00000129493|Q86XA9|HEATR5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2741088867188	2	534.272455	1066.53036	0.065392	3.4937E-05	3.1978	0.0017085	3.2632	0.0017434	534.2738622833407	23.009	0.79208	22.807	22.361	23.153	-0.20193					35	16	3	0	0	0	0.85329	1	871	871		35.618	4.0885	1	246730	+		51186	23050	35693	35745	56512	56512					-0.00024655300899212307
MFATMRAIC	9	Unmodified	_MFATMRAIC_					0	0	0			REV__ENST00000379731.4_1_9:33110684-33110912:-|nuORF	REV__ENST00000379731.4_1_9:33110684-33110912:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2468872070312	2	522.245383	1042.47621	-0.92601	-0.0004836	4.2438	0.0022163	3.3177	0.0017327	522.247516676745	83.47	0.81501	83.496	83.173	83.988	0.026558					44	18	3	0	0	0	0.27161	1	10362	10362		79.451	4.4077	1	1079400	+		51187	31446	35694	35746	56513	56513					-0.04332570724136531
MFAVNKLLKN	10	Unmodified	_MFAVNKLLKN_					0	0	0			REV__ENSG00000138109|ENST00000260682|CYP2C9	REV__ENSG00000138109|ENST00000260682|CYP2C9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3425903320312	2	589.341726	1176.6689	-1.5173	-0.0008942	3.6219	0.0021345	2.1046	0.0012403	589.3436932414581	103.63	0.73327	103.63	103.38	104.12	0					46	17	4	0	0	0	1.089	1	13300	13300		34.173	2.6427	1	562530	+		51188	23821	35695	35747	56514	56514					0.08763210939059718
MFAVTPHQY	9	Unmodified	_MFAVTPHQY_					0	0	0		ENST00000396275.2_1_11:18158991-18159231:+|nuORF	ENST00000396275.2_1_11:18158991-18159231:+|nuORF	ENST00000396275.2_1_11:18158991-18159231:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3109741210938	2	547.260402	1092.50625	-0.42598	-0.00023312	1.244	0.00068079	0.81801	0.00044767	547.2601587961494	64.112	0.24319	63.854	63.713	63.956	-0.25824					7	5	2	0	0	0	0.024381	1	7254	7254		55.504	20.352	1	86133			51189	13549	35696	35748	56515	56515					-0.036301724629083765
MFFLLSVLN	9	Unmodified	_MFFLLSVLN_					0	0	0			REV__ENST00000475157.1_1_1:203278477-203278573:+|nuORF	REV__ENST00000475157.1_1_1:203278477-203278573:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2994995117188	2	542.298996	1082.58344	-1.928	-0.0010455	3.9377	0.0021354	2.0097	0.0010899	542.3010836243654	65.04	1.697	64.777	64.417	66.114	-0.2626					88	45	2	0	0	0	0.75397	1	7673	7673		42.396	2.338	1	23435000	+		51190	33285	35697	35749	56516	56516					0.04545045753411614
MFFTAWFF	8	Unmodified	_MFFTAWFF_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.8025512695312	2	548.751682	1095.48881	-0.56785	-0.00031161	4.1924	0.0023006	3.6246	0.001989	548.7539328201325	31.016	0.41332	30.775	30.541	30.954	-0.24109					15	9	2	0	0	0	0.027866	1	1994	1994		31.579	0	1	146800			51191	4833	35698	35750	56517	56517					-0.0551146799793969
MFIEHLYDWFK	11	Unmodified	_MFIEHLYDWFK_					0	0	0			REV__ENSG00000196968|ENST00000372841|FUT11	REV__ENSG00000196968|ENST00000372841|FUT11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7899475097656	3	510.247962	1527.72206	-0.47829	-0.00024405	-4.2313	-0.002159	-4.7096	-0.0024031	510.5806626331189	42.876	0.49922	42.638	42.38	42.879	-0.23736					18	12	2	0	0	0	0.024879	1	3909	3909		8.7993	0.39205	1	181580	+		51192	28247	35699	35751	56518	56518					-0.020694560689435093
MFIIIGICV	9	Unmodified	_MFIIIGICV_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7847900390625	2	504.784667	1007.55478	0.7232	0.00036506	-2.072	-0.0010459	-1.3488	-0.00068087	504.78352141815054	98.194	1.3102	98.192	97.68	98.99	-0.0020828					63	30	3	0	0	0	0.48384	1	12499	12499		60.404	2.951	1	1329300			51193	2238	35700	35752	56519	56519					0.051306048526043924
MFIIIGICV	9	Unmodified	_MFIIIGICV_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.78363037109375	2	504.784667	1007.55478	-0.34095	-0.00017211	-1.5421	-0.00077845	-1.8831	-0.00095056	504.7838187807542	98.035	1.7286	97.87	97.125	98.853	-0.1652					69	37	2	0	0	0	0.48384	1	12164	12164		60.404	4.8994	1	974710			51194	2238	35700	35752	56520	56520					0.051306048526043924
MFKKMYIY	8	Unmodified	_MFKKMYIY_					0	0	0			REV__ENST00000221327.8_1_19:44981766-44981880:-|nuORF	REV__ENST00000221327.8_1_19:44981766-44981880:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.769287109375	2	562.287574	1122.56059	0.12291	6.9111E-05	-4.401	-0.0024746	-4.2781	-0.0024055	562.7866087805596	63.43	0.59064	63.172	62.835	63.425	-0.25824					19	14	2	0	0	0	0.027866	1	7116	7116		33.516	0	1	205590	+		51195	29345	35701	35753	56521	56521					0.004217033642817114
MFKQEGFGPE	10	Unmodified	_MFKQEGFGPE_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3302001953125	2	585.268424	1168.5223	0.85931	0.00050293	-3.7308	-0.0021835	-2.8714	-0.0016806	585.2661223672745	59.715	0.4637	59.517	59.339	59.802	-0.19742					19	11	2	0	0	0	0.03519	1	6651	6651		31.53	0	1	181700	+		51196	28927	35702	35754	56522	56522					-0.05522511016670251
MFKQEGFGPE	10	Unmodified	_MFKQEGFGPE_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.268424	1168.5223	-0.18291	-0.00010705	-2.7201	-0.001592	-2.903	-0.001699	585.2668678408544	59.464	0.55536	59.283	59.032	59.587	-0.18134	-0.15437	0.00027125	NaN	47.657	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128060	+		51197	28927	35702	35754							-0.05522511016670251
MFKQEGFGPE	10	Unmodified	_MFKQEGFGPE_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.268424	1168.5223	-0.42868	-0.00025089	-2.3404	-0.0013698	-2.7691	-0.0016207	585.2670117182333	59.759	0.39592	59.511	59.252	59.648	-0.24842	0.0739	0.00071563	NaN	47.657	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118000	+		51198	28927	35702	35754							-0.05522511016670251
MFLCDCEWCTW	11	Unmodified	_MFLCDCEWCTW_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2953186035156	3	479.509584	1435.50692	-0.23246	-0.00011147	-3.1199	-0.001496	-3.3523	-0.0016075	479.50792568507376	24.261	1.0339	24.086	23.743	24.777	-0.17484					40	23	2	0	0	0	0.024821	1	1033	1033		9.6461	0	1	77139	+		51199	20529	35703	35755	56523	56523					-0.1934120519206317
MFLEEHKY	8	Unmodified	_MFLEEHKY_					0	0	0		ENST00000595288.5_1_19:7687207-7690948:-|nuORF;ENSG00000076924|ENST00000358368|XAB2	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2967529296875	2	548.760235	1095.50592	-0.6245	-0.0003427	0.27059	0.00014849	-0.35391	-0.00019421	548.7605065611198	91.083	0.44659	90.959	90.754	91.201	-0.12341					15	10	2	0	0	0	0.027866	1	11173	11173		37.159	19.794	1	112860			51200	1593	35704	35756	56524	56524					-0.03801592182776403
MFLEEHKY	8	Unmodified	_MFLEEHKY_					0	0	0		ENST00000595288.5_1_19:7687207-7690948:-|nuORF;ENSG00000076924|ENST00000358368|XAB2	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENST00000595288.5_1_19:7687207-7690948:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.760235	1095.50592	0.064148	3.5202E-05	0.001013	5.5588E-07	0.065161	3.5758E-05	548.7603729569046	91.132	0.57217	90.992	90.744	91.316	-0.13942	0.016485	-0.00020254	NaN	45.952	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124660			51201	1593	35704	35756							-0.03801592182776403
MFLGMDLPGL	10	Oxidation (M)	_MFLGM(Oxidation (M))DLPGL_		MFLGM(1)DLPGL		M(-44)FLGM(44)DLPGL	0	0	1		nc|ENSG00000156869|Q6ZNA5-2|FRRS1;ENSG00000156869|ENST00000646001|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2716674804688	2	555.272121	1108.52969	-0.43337	-0.00024064	0.52119	0.0002894	0.08782	4.8764E-05	555.2721837114427	95.823	1.1105	95.666	95.269	96.379	-0.15646					60	25	4	0	0	0	0.79525	1	11854	11854		60.972	9.6365	2	1827300			51202	18405	35705	35757	56525	56525		578			-0.020234947406379433
MFLPIISM	8	Oxidation (M)	_MFLPIISM(Oxidation (M))_		MFLPIISM(1)		M(-63)FLPIISM(63)	0	0	1			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|233|3|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|233|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2534484863281	2	484.2532	966.491847	-0.22629	-0.00010958	0.59941	0.00029027	0.37312	0.00018069	484.2534186100866	52.372	1.3594	52.372	52.012	53.372	0					101	35	5	0	0	0	0.75307	1	5639	5639		62.978	8.2138	2	9564000	+		51203	36291	35706	35758	56526	56526		960			0.007260390645797088
MFLRGRPVT	9	Unmodified	_MFLRGRPVT_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8032836914062	2	538.805311	1075.59607	-1.3629	-0.00073432	-3.2947	-0.0017752	-4.6576	-0.0025095	538.8033452203512	93.727	1.67	93.587	93.135	94.805	-0.13995					102	38	4	0	0	0	0.17455	1	11512	11512		94.006	3.2298	1	2962700			51204	1342	35707	35759	56527	56527					0.061295019362887615
MFLTLHMCV	9	Unmodified	_MFLTLHMCV_					0	0	0		ENST00000436258.1_1_7:35131492-35145694:-|nuORF	ENST00000436258.1_1_7:35131492-35145694:-|nuORF	ENST00000436258.1_1_7:35131492-35145694:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2764892578125	2	547.763409	1093.51226	-1.5774	-0.00086403	-1.263	-0.0006918	-2.8403	-0.0015558	547.7626226093693	30.546	0.74607	30.546	30.3	31.047	0					26	17	3	0	0	0	0.024325	1	1974	1974		60.294	23.135	1	161360			51205	14275	35708	35760	56528	56528					-0.030751135472883107
MFLWLGFSP	9	Unmodified	_MFLWLGFSP_					0	0	0		ENST00000282120.6_1_2:85547086-85547299:-|nuORF	ENST00000282120.6_1_2:85547086-85547299:-|nuORF	ENST00000282120.6_1_2:85547086-85547299:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3026123046875	2	549.278063	1096.54157	-0.55822	-0.00030662	-0.019778	-1.0864E-05	-0.57799	-0.00031748	549.2779843981499	78.761	0.46173	78.761	78.531	78.993	0					14	10	2	0	0	0	0.024183	1	9732	9732		50.025	7.5501	1	67970			51206	11726	35709	35761	56529	56529					-0.0028350993511594424
MFMSPETIKQ	10	2 Oxidation (M)	_M(Oxidation (M))FM(Oxidation (M))SPETIKQ_		M(1)FM(1)SPETIKQ		M(48)FM(48)SPETIKQ	0	0	2			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.1953430175781	3	415.194758	1242.56245	-0.53102	-0.00022048	1.6068	0.00066712	1.0757	0.00044664	415.1955312379118	42.196	1.1016	41.964	41.583	42.684	-0.23186					90	29	5	0	0	0	0.98527	1	3779	3779		47.96	9.2059	1	3212600	+		51207	25024	35710	35762	56530	56530		740;741			-0.049133324084095875
MFNKLNPLT	9	Unmodified	_MFNKLNPLT_					0	0	0			REV__nc|ENSG00000198382|Q9P2Y5-2|UVRAG	REV__nc|ENSG00000198382|Q9P2Y5-2|UVRAG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.8032836914062	2	539.291702	1076.56885	-0.24706	-0.00013324	0.60222	0.00032477	0.35516	0.00019153	539.2937322251416	93.204	0.87065	93.082	92.67	93.54	-0.12215					44	19	3	0	0	0	0.022083	1	11527	11527		76.774	0	1	289770	+		51208	28418	35711	35763	56531	56531					0.03362973605226216
MFNKLNPLT	9	Unmodified	_MFNKLNPLT_					0	0	0			REV__nc|ENSG00000198382|Q9P2Y5-2|UVRAG	REV__nc|ENSG00000198382|Q9P2Y5-2|UVRAG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.8028564453125	2	539.291702	1076.56885	-0.87556	-0.00047218	0.15739	8.4879E-05	-0.71817	-0.0003873	539.7921923543972	93.214	1.218	93.07	92.785	94.003	-0.1441					60	27	4	0	0	0	0.023635	1	11518	11518		56.721	0	1	223360	+		51209	28418	35711	35763	56532	56532					0.03362973605226216
MFNYTPYGL	9	Oxidation (M)	_M(Oxidation (M))FNYTPYGL_		M(1)FNYTPYGL		M(85)FNYTPYGL	0	0	1			REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.2546997070312	2	561.252243	1120.48993	1.1043	0.00061977	3.4675	0.0019461	4.5718	0.0025659	561.2540633627092	64.054	0.84174	64.054	63.736	64.578	0					69	22	4	0	0	0	0.22754	3	7530	7508;7519;7530		85.359	19.556	1	3390200	+		51210	33337	35712	35764	56533;56534;56535	56535		911			-0.06549298419690786
MFNYTPYGL	9	Oxidation (M)	_M(Oxidation (M))FNYTPYGL_		M(1)FNYTPYGL		M(74)FNYTPYGL	0	0	1			REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.2550659179688	2	561.252243	1120.48993	1.1111	0.00062363	3.2009	0.0017965	4.3121	0.0024201	561.2539377238572	64.054	1.0661	64.1	63.759	64.825	0.045502					64	28	3	0	0	0	0.31247	1	7431	7431		73.975	8.1716	1	3658300	+		51211	33337	35712	35764	56536	56536		911			-0.06549298419690786
MFNYTPYGL	9	Oxidation (M)	_M(Oxidation (M))FNYTPYGL_					0	0	1			REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	561.252243	1120.48993	-0.39725	-0.00022296	5.0792	0.0028507	4.6819	0.0026278	561.2549577136687	64.43	0.43149	64.196	63.982	64.413	-0.2345	0.067035	0.0010771	NaN	85.359	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242250	+		51212	33337	35712	35764				911			-0.06549298419690786
MFNYTPYGL	9	Oxidation (M)	_M(Oxidation (M))FNYTPYGL_					0	0	1			REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.252243	1120.48993	-0.033046	-1.8547E-05	4.4524	0.0024989	4.4194	0.0024804	561.2546037162883	64.389	0.43009	64.191	63.995	64.425	-0.19807	0.061904	0.00037352	NaN	85.359	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181240	+		51213	33337	35712	35764				911			-0.06549298419690786
MFNYTPYGL	9	Oxidation (M)	_M(Oxidation (M))FNYTPYGL_					0	0	1			REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	REV__ENST00000494558.5_1_3:150276231-150281349:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	561.252243	1120.48993	-0.68804	-0.00038616	5.3252	0.0029888	4.6371	0.0026026	561.2550330956334	64.456	0.38662	64.2	63.999	64.386	-0.25562	0.071589	0.0013532	NaN	85.359	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241140	+		51214	33337	35712	35764				911			-0.06549298419690786
MFPLKLRFV	9	Unmodified	_MFPLKLRFV_					0	0	0			REV__nc|ENSG00000147533|Q7Z5G4-3|GOLGA7	REV__nc|ENSG00000147533|Q7Z5G4-3|GOLGA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8432006835938	2	575.843905	1149.67326	-0.20793	-0.00011974	-0.74387	-0.00042835	-0.9518	-0.00054809	575.8433179118674	102.57	0.50226	102.57	102.33	102.83	-0.0046082					31	11	4	0	0	0	0.80658	1	13063	13063		38.806	1.647	1	609130	+		51215	36764	35713	35765	56537	56537					0.10440720152610083
MFPLKLRFV	9	Unmodified	_MFPLKLRFV_					0	0	0			REV__nc|ENSG00000147533|Q7Z5G4-3|GOLGA7	REV__nc|ENSG00000147533|Q7Z5G4-3|GOLGA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8436279296875	2	575.843905	1149.67326	0.36839	0.00021213	-1.4908	-0.00085848	-1.1224	-0.00064635	575.8429202479575	102.65	0.55697	102.52	102.23	102.79	-0.12931					33	12	4	0	0	0	0.90698	1	12749	12749		31.955	6.3808	1	490120	+		51216	36764	35713	35765	56538	56538					0.10440720152610083
MFPSLGSVLI	10	Unmodified	_MFPSLGSVLI_					0	0	0			REV__nc|ENSG00000065534|Q15746-9|MYLK	REV__nc|ENSG00000065534|Q15746-9|MYLK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.295166015625	2	532.296453	1062.57835	-0.57924	-0.00030833	-2.8926	-0.0015397	-3.4718	-0.001848	532.2946716746322	101.14	0.90977	101.14	100.82	101.73	0					32	20	2	0	0	0	0.50466	1	12946	12946		87.754	0	1	798520	+		51217	20313	35714	35766	56539	56539					0.049567418908054606
MFPSLGSVLI	10	Unmodified	_MFPSLGSVLI_					0	0	0			REV__nc|ENSG00000065534|Q15746-9|MYLK	REV__nc|ENSG00000065534|Q15746-9|MYLK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.294921875	2	532.296453	1062.57835	-0.032021	-1.7044E-05	-3.2954	-0.0017542	-3.3275	-0.0017712	532.2944620949154	101.17	0.86046	101.17	100.85	101.71	-0.0054398					57	19	4	0	0	0	0.55353	1	12865	12865		82.241	1.7859	1	1868200	+		51218	20313	35714	35766	56540	56540					0.049567418908054606
MFSFIGLPE	9	Unmodified	_MFSFIGLPE_					0	0	0			REV__ENST00000559676.1_1_15:78777183-78780743:+|nuORF	REV__ENST00000559676.1_1_15:78777183-78780743:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7957763671875	2	520.759704	1039.50485	-1.0227	-0.00053256	-2.788	-0.0014519	-3.8107	-0.0019844	521.2593513822404	48.518	0.27533	48.518	48.344	48.619	0					11	7	2	0	0	0	0.024506	1	4954	4954		16.473	0	1	181790	+		51219	35124	35715	35767	56541	56541					-0.013318065517069044
MFSRLTFAL	9	Unmodified	_MFSRLTFAL_					0	0	0		ENST00000534837.5_1_12:6803716-6804310:-|nuORF	ENST00000534837.5_1_12:6803716-6804310:-|nuORF	ENST00000534837.5_1_12:6803716-6804310:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.7991943359375	2	543.294245	1084.57394	-1.1452	-0.00062217	0.70333	0.00038212	-0.44185	-0.00024006	543.2946847285513	72.382	0.67015	72.184	71.869	72.539	-0.19811					27	15	2	0	0	0	0.40693	1	8454	8454		65.465	14.13	1	2526400			51220	16338	35716	35768	56542	56542					0.035032774678711576
MFVTLLEYVQ	10	Unmodified	_MFVTLLEYVQ_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	622.3023681640625	2	621.825575	1241.6366	-0.15759	-9.7994E-05	2.7724	0.0017239	2.6148	0.0016259	621.8273635875851	64.2	0.62952	63.943	63.637	64.267	-0.25789					35	15	3	0	0	0	0.03519	1	7277	7277		51.193	8.7966	1	691190	+		51221	25520	35717	35769	56543	56543					0.025443787453923505
MFYRLSMP	8	Unmodified	_MFYRLSMP_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8168334960938	2	522.753898	1043.49324	-1.0818	-0.00056553	2.2661	0.0011846	1.1843	0.00061907	522.7534947706537	64.649	0.1115	64.649	64.578	64.69	0					4	2	2	0	0	0	0.027866	1	7615	7615		57.811	28.662	1	27326			51222	10159	35718	35770	56544	56544					-0.026763268466993395
MGAGPVMYPY	10	Unmodified	_MGAGPVMYPY_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2444458007812	2	543.243363	1084.47217	-0.3577	-0.00019432	3.2908	0.0017877	2.9331	0.0015934	543.2446333116471	67.232	3.2131	67.008	66.714	69.927	-0.22374					160	78	4	0	0	0	0.88914	1	7803	7803		54.765	8.8127	1	2465700	+		51223	28183	35719	35771	56545	56545					-0.06668336946199815
MGAISFFIF	9	Unmodified	_MGAISFFIF_					0	0	0		ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENST00000545213.5_1_14:24789074-24794639:-|nuORF	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2822875976562	2	516.764789	1031.51502	-0.0436	-2.2531E-05	-0.47952	-0.0002478	-0.52312	-0.00027033	516.7642858226283	75.045	0.48795	74.786	74.535	75.023	-0.25887					29	11	3	0	0	0	0.024412	1	9151	9151		40.573	0	1	245150			51224	32	35720	35772	56546	56546					0.0005280117352413072
MGAISFFIF	9	Unmodified	_MGAISFFIF_					0	0	0		ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENST00000545213.5_1_14:24789074-24794639:-|nuORF	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.764789	1031.51502	-0.77162	-0.00039875	-0.13932	-7.1994E-05	-0.91094	-0.00047074	516.7645415620108	74.804	0.64551	74.815	74.565	75.211	0.010376	0.013259	0.00030028	NaN	57.811	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223680			51225	32	35720	35772							0.0005280117352413072
MGDFEFALV	9	Unmodified	_MGDFEFALV_					0	0	0		nc|ENSG00000204815|Q96NG3-2|ODAD4;ENSG00000204815|ENST00000377540|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7432861328125	2	514.741511	1027.46847	0.68471	0.00035245	3.4369	0.0017691	4.1216	0.0021216	514.7430529878086	70.233	0.50409	69.94	69.633	70.137	-0.29291					29	13	3	0	0	0	0.78069	1	8442	8442		40.573	5.3719	1	2286000			51226	10378	35721	35773	56547	56547					-0.04416683448425829
MGDGSKNISW	10	Unmodified	_MGDGSKNISW_					0	0	0			REV__ENST00000288828.8_1_7:5229834-5229981:+|nuORF	REV__ENST00000288828.8_1_7:5229834-5229981:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2869873046875	2	547.750398	1093.48624	-0.53904	-0.00029526	-3.0337	-0.0016617	-3.5728	-0.001957	547.7486318663649	47.865	0.48133	47.767	47.52	48.002	-0.097549					21	12	2	0	0	0	0.03519	1	4694	4694		56.434	0	1	387020	+		51227	29929	35722	35774	56548	56548					-0.056759681935545814
MGDGSKNISW	10	Unmodified	_MGDGSKNISW_					0	0	0			REV__ENST00000288828.8_1_7:5229834-5229981:+|nuORF	REV__ENST00000288828.8_1_7:5229834-5229981:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2869873046875	2	547.750398	1093.48624	-0.89681	-0.00049123	-2.8308	-0.0015506	-3.7276	-0.0020418	547.7487506219775	48.268	0.59217	47.992	47.664	48.257	-0.27598					26	15	2	0	0	0	0.03519	1	4735	4735		75.043	27.386	1	374570	+		51228	29929	35722	35774	56549	56549					-0.056759681935545814
MGDTVYTHF	9	Unmodified	_MGDTVYTHF_					0	0	0		ENST00000523988.5_1_13:45973026-45978512:-|nuORF;nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENSG00000174032|ENST00000519676|SLC25A30	ENST00000523988.5_1_13:45973026-45978512:-|nuORF	ENST00000523988.5_1_13:45973026-45978512:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.30029296875	2	535.734217	1069.45388	0.068092	3.6479E-05	3.2924	0.0017639	3.3605	0.0018004	535.7359085007765	21.413	0.81459	21.236	20.967	21.781	-0.17721					32	16	3	0	0	0	0.024506	1	704	704		23.042	0	1	272960			51229	8437	35723	35775	56550	56550					-0.07806755596561743
MGECPHLV	8	Unmodified	_MGECPHLV_					0	0	0		nc|nan|Q9NRJ1|C8orf17	nc|nan|Q9NRJ1|C8orf17	nc|nan|Q9NRJ1|C8orf17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2420349121094	2	443.201499	884.388444	-1.6229	-0.00071926	1.9011	0.00084258	0.27825	0.00012332	443.2023942316911	38.33	0.16702	38.357	38.23	38.397	0.027279					6	4	2	0	0	0	0.027866	1	3126	3126		65.897	13.598	1	55400			51230	18860	35724	35776	56551	56551					-0.05837448323245553
MGEEKFHAM	9	Unmodified	_MGEEKFHAM_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.233642578125	2	540.23607	1078.45759	-0.69106	-0.00037333	-3.6146	-0.0019527	-4.3057	-0.0023261	540.2341320885131	26.724	1.482	26.724	26.283	27.765	0					110	37	4	0	0	0	0.4752	1	1385	1385		60.972	2.19	1	5851700	+		51231	20912	35725	35777	56552	56552					-0.07850409094339739
MGEEKFHAM	9	Unmodified	_MGEEKFHAM_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2339477539062	2	540.23607	1078.45759	-0.98358	-0.00053136	-3.3469	-0.0018081	-4.3304	-0.0023395	540.2342969035095	26.695	1.6262	26.672	26.243	27.869	-0.023088					122	41	5	0	0	0	0.62163	1	1413	1413		51.335	8.861	1	6429000	+		51232	20912	35725	35777	56553	56553					-0.07850409094339739
MGETLGEGII	10	Oxidation (M)	_M(Oxidation (M))GETLGEGII_		M(1)GETLGEGII		M(100)GETLGEGII	0	0	1			REV__nc|ENSG00000188042|P56559|ARL4C	REV__nc|ENSG00000188042|P56559|ARL4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.254982	1034.49541	-0.20168	-0.00010452	3.0385	0.0015747	2.8368	0.0014702	518.2576088278066	102.68	0.33404	102.67	102.46	102.79	-0.0046082					15	7	3	0	0	0	0.03519	1	13060	13060		101.6	16.685	1	244870	+		51233	28003	35726	35778	56554	56554		833			-0.0204561962787011
MGGFYLCQP	9	Unmodified	_MGGFYLCQP_					0	0	0		ENST00000565089.5_1_16:28943294-28944055:+|nuORF;ENSG00000177455|ENST00000538922|CD19;nc|ENSG00000177455|P15391-2|CD19	ENST00000565089.5_1_16:28943294-28944055:+|nuORF	ENST00000565089.5_1_16:28943294-28944055:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.78363037109375	2	508.222431	1014.43031	-0.68646	-0.00034888	3.3664	0.0017109	2.6799	0.001362	508.2241213600334	56.529	0.54622	56.365	56.129	56.675	-0.16431					26	14	2	0	0	0	0.024325	1	6311	6311		40.573	0	1	80988			51234	8739	35727	35779	56555	56555					-0.07632892634728705
MGGVLSLIR	9	Unmodified	_MGGVLSLIR_					0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.2818298339844	2	473.281137	944.547722	-1.11	-0.00052533	1.1036	0.0005223	-0.0064081	-3.0329E-06	473.2815250605979	65.546	0.74036	65.333	65.094	65.834	-0.21327					41	17	3	0	0	0	0.39228	1	7490	7490		66.429	9.7082	1	1241800	+		51235	36572	35728	35780	56556	56556					0.07323008296395983
MGGVSLGPAFV	11	Unmodified	_MGGVSLGPAFV_					0	0	0		ENSG00000182318|ENST00000329665|ZSCAN22	ENSG00000182318|ENST00000329665|ZSCAN22	ENSG00000182318|ENST00000329665|ZSCAN22	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7686157226562	2	517.770603	1033.52665	-0.31164	-0.00016136	-2.5077	-0.0012984	-2.8194	-0.0014598	517.7695828487074	39.273	0.90896	39.273	38.97	39.879	0					69	25	6	0	0	0	0.74586	1	3382	3382		60.972	8.0352	1	7075600			51236	9125	35729	35781	56557	56557					0.011229981968881475
MGHITLLIL	9	Unmodified	_MGHITLLIL_					0	0	0			REV__ENSG00000196944|ENST00000366473|OR2T4	REV__ENSG00000196944|ENST00000366473|OR2T4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2695617675781	2	505.806988	1009.59942	0.30848	0.00015603	3.4453	0.0017426	3.7538	0.0018987	505.8085776811006	18.887	0.44408	18.683	18.46	18.904	-0.20371					21	8	4	0	0	0	0.024535	1	347	347		25.45	0	1	159390	+		51237	28242	35730	35782	56558	56558					0.09500751990310619
MGHKPIWKP	9	Unmodified	_MGHKPIWKP_					0	0	0		ENST00000437623.1_3_2:162089384-162092026:+|nuORF	ENST00000437623.1_3_2:162089384-162092026:+|nuORF	ENST00000437623.1_3_2:162089384-162092026:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.3037109375	2	547.302404	1092.59026	-1.034	-0.00056593	3.0044	0.0016443	1.9703	0.0010784	547.3040135815362	37.253	0.96876	37.034	36.647	37.615	-0.2195					55	24	3	0	0	0	0.85329	1	2981	2981		35.618	0	1	4289300			51238	14297	35731	35783	56559	56559					0.04766403424628152
MGIGGVLGLL	10	Unmodified	_MGIGGVLGLL_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8934631347656	2	465.278063	928.541574	-0.77838	-0.00036216	2.184	0.0010161	1.4056	0.00065398	465.2795711575133	30.11	0.30011	29.932	29.824	30.124	-0.17818					11	6	3	0	0	0	0.03519	1	1894	1894		26.796	12.132	1	61597			51239	4531	35732	35784	56560	56560					0.07444490064881393
MGKAFKVMNE	10	Unmodified	_MGKAFKVMNE_					0	0	0		ENST00000512977.1_1_5:137043266-137071515:-|nuORF;nc|ENSG00000146021|Q9UH77-2|KLHL3;ENSG00000146021|ENST00000309755|KLHL3	ENST00000512977.1_1_5:137043266-137071515:-|nuORF	ENST00000512977.1_1_5:137043266-137071515:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.7703857421875	2	577.788469	1153.56239	0.097988	5.6617E-05	-2.5586	-0.0014783	-2.4606	-0.0014217	577.7873086391256	51.754	0.36482	51.635	51.504	51.869	-0.11875					12	9	3	0	0	0	0.03519	1	5338	5338		40.058	10.909	1	169860			51240	5851	35733	35785	56561	56561					-0.008252876177493818
MGKMYLKTSPM	11	2 Oxidation (M)	_M(Oxidation (M))GKMYLKTSPM(Oxidation (M))_		M(1)GKM(0.001)YLKTSPM(0.999)		M(37)GKM(-32)YLKTSPM(32)	0	0	2		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	440.2107849121094	3	440.211643	1317.6131	0.15575	6.8564E-05	-2.5324	-0.0011148	-2.3766	-0.0010462	440.210440869061	50.822	0.70493	50.546	50.224	50.929	-0.27643					57	18	4	0	0	0	0.92638	1	5190	5190		50.034	9.9753	3	3122200			51241	5372	35734	35786	56562	56562		223;224			-0.033001263550886506
MGLCWMNWHDR	11	Unmodified	_MGLCWMNWHDR_					0	0	0			REV__ENST00000416600.6_1_20:3846925-3847768:+|nuORF	REV__ENST00000416600.6_1_20:3846925-3847768:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2703552246094	3	483.538865	1447.59477	-0.56036	-0.00027095	3.9263	0.0018985	3.3659	0.0016275	483.54080538946357	30.907	0.58281	30.981	30.75	31.333	0.074314					27	13	3	0	0	0	0.024845	1	2004	2004		3.4087	0.87471	1	138990	+		51242	32080	35735	35787	56563	56563					-0.11112823486450907
MGLIGIVLGG	10	Unmodified	_MGLIGIVLGG_					0	0	0			REV__ENST00000370272.8_1_1:93826284-93826383:+|nuORF	REV__ENST00000370272.8_1_1:93826284-93826383:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2804260253906	2	465.278063	928.541574	0.10623	4.9428E-05	4.2696	0.0019865	4.3758	0.002036	465.2798872623321	87.824	1.1491	87.824	87.491	88.64	0					78	27	4	0	0	0	1.1309	1	11064	11064		26.796	1.3459	1	1815400	+		51243	31120	35736	35788	56564	56564					0.07444490064881393
MGLIGIVLGG	10	Unmodified	_MGLIGIVLGG_					0	0	0			REV__ENST00000370272.8_1_1:93826284-93826383:+|nuORF	REV__ENST00000370272.8_1_1:93826284-93826383:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.28021240234375	2	465.278063	928.541574	0.58248	0.00027101	3.7335	0.0017371	4.316	0.0020081	465.2796843838928	87.889	1.2768	87.859	87.495	88.772	-0.029808					82	30	4	0	0	0	1.0812	1	11057	11057		35.201	5.3592	1	1985900	+		51244	31120	35736	35788	56565	56565					0.07444490064881393
MGLLPLLSN	9	Unmodified	_MGLLPLLSN_					0	0	0			REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2795104980469	2	479.275521	956.536489	0.97614	0.00046784	3.0162	0.0014456	3.9924	0.0019134	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.72875	2	10165	9961;10165		44.117	13.613	1	7774800	+		51245	33334	35737	35789	56566;56567	56567					0.0564818620226788
MGLLPLLSN	9	Unmodified	_MGLLPLLSN_					0	0	0			REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2771911621094	2	479.275521	956.536489	0.1691	8.1046E-05	3.582	0.0017168	3.7511	0.0017978	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.97455	1	9780	9780		25.574	1.0549	1	1990900	+		51246	33334	35737	35789	56568	56568					0.0564818620226788
MGLLPLLSN	9	Unmodified	_MGLLPLLSN_					0	0	0			REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2772216796875	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.80658	2	10295	10209;10295		38.806	3.6435	1	7158600	+		51247	33334	35737	35789	56569;56570	56570					0.0564818620226788
MGLLPLLSN	9	Unmodified	_MGLLPLLSN_					0	0	0			REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	REV__ENST00000477487.5_1_16:24815406-24816553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27728271484375	2	479.275521	956.536489	0.2758	0.00013219	3.6384	0.0017438	3.9142	0.001876	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.80658	2	10026	10026;10170		38.806	2.1027	1	7407200	+		51248	33334	35737	35789	56571;56572	56571					0.0564818620226788
MGLLSAPVAV	10	Unmodified	_MGLLSAPVAV_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2772216796875	2	479.275521	956.536489	-0.16077	-7.7054E-05	3.8323	0.0018367	3.6715	0.0017597	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	1.1088	1	9776	9776		31.53	1.6883	1	2028900	+		51249	19148	35738	35790	56573	56573					0.05648186202245142
MGLLYKVL	8	Unmodified	_MGLLYKVL_					0	0	0		ENST00000497209.5_1_20:61299742-61303242:+|nuORF;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1	ENST00000497209.5_1_20:61299742-61303242:+|nuORF	ENST00000497209.5_1_20:61299742-61303242:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2537841796875	2	468.782982	935.55141	-0.1724	-8.0818E-05	3.9373	0.0018458	3.7649	0.0017649	468.78476742152344	48.787	0.64603	48.854	48.588	49.235	0.066799					35	17	3	0	0	0	0.027866	1	4940	4940		26.796	0	1	484750			51250	2289	35739	35791	56574	56574					0.08105678070251088
MGLWHGLNKLL	11	Unmodified	_MGLWHGLNKLL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2538757324219	3	427.909392	1280.70635	-0.57846	-0.00024753	0.53971	0.00023095	-0.038753	-1.6583E-05	427.9094275076776	23.166	0.71761	23.166	22.848	23.566	0					40	16	4	0	0	0	0.024768	1	929	929		45.022	2.6841	1	470080	+		51251	22799	35740	35792	56575	56575					0.07722302204683729
MGLWHGLNKLL	11	Unmodified	_MGLWHGLNKLL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2539367675781	3	427.909392	1280.70635	-0.45731	-0.00019569	0.41767	0.00017873	-0.039636	-1.6961E-05	427.909382157493	23.15	1.1321	23.089	22.425	23.557	-0.060862					49	25	4	0	0	0	0.024768	1	919	919		45.022	3.9132	1	465530	+		51252	22799	35740	35792	56576	56576					0.07722302204683729
MGMVLHKP	8	Unmodified	_MGMVLHKP_					0	0	0			REV__nc|ENSG00000211710|A0A577|TRBV4-1	REV__nc|ENSG00000211710|A0A577|TRBV4-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7664489746094	2	456.743334	911.472114	0.12496	5.7076E-05	0.50713	0.00023163	0.63209	0.0002887	456.7431376815689	43.777	0.29272	43.808	43.737	44.029	0.030823					10	7	2	0	0	0	0.027866	1	4091	4091		26.796	5.0938	1	58426	+		51253	37100	35741	35793	56577	56577					0.012837078444704275
MGNRLLLHVL	10	Unmodified	_MGNRLLLHVL_					0	0	0		ENST00000476936.5_1_1:113162466-113209756:+|nuORF	ENST00000476936.5_1_1:113162466-113209756:+|nuORF	ENST00000476936.5_1_1:113162466-113209756:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.3027954101562	2	583.347343	1164.68013	-1.0496	-0.00061228	-3.6797	-0.0021465	-4.7293	-0.0027588	583.346200119186	64.829	0.43274	64.574	64.386	64.819	-0.25563					13	10	2	0	0	0	0.03519	1	7395	7395		31.955	8.9124	1	78022			51254	15104	35742	35794	56578	56578					0.10438033033210559
MGPGPPPPP	9	Unmodified	_MGPGPPPPP_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000136367|Q9C0A1-2|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.16217041015625	2	423.712556	845.41056	-0.048663	-2.0619E-05	2.2464	0.00095181	2.1977	0.00093119	423.7143415086092	31.407	0.10914	31.166	31.112	31.221	-0.24109					4	2	2	0	0	0	0.024475	1	2077	2077		14.664	0	1	28363			51255	5011	35743	35795	56579	56579					-0.01832900583178798
MGPNIRNN	8	Unmodified	_MGPNIRNN_					0	0	0		ENST00000370481.8_1_1:89472980-89473100:-|nuORF	ENST00000370481.8_1_1:89472980-89473100:-|nuORF	ENST00000370481.8_1_1:89472980-89473100:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2396240234375	2	458.226894	914.439234	0.52383	0.00024003	-0.52218	-0.00023928	0.0016458	7.5414E-07	458.2268663490215	33.506	0.15438	33.563	33.5	33.654	0.056568					5	3	2	0	0	0	0.027866	1	2368	2368		24.203	3.7209	1	71686			51256	12959	35744	35796	56580	56580					-0.021407829540294188
MGQWIVQME	9	Unmodified	_MGQWIVQME_					0	0	0		ENST00000452346.6_2_3:111793214-111795796:+|nuORF	ENST00000452346.6_2_3:111793214-111795796:+|nuORF	ENST00000452346.6_2_3:111793214-111795796:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2793579101562	2	561.259545	1120.50454	0.88264	0.00049539	3.8879	0.0021821	4.7706	0.0026775	561.2610803317801	85.226	0.20803	85.226	85.164	85.372	0					6	4	2	0	0	0	0.024511	1	10689	10689		40.778	1.5253	1	38091			51257	14533	35745	35797	56581	56581					-0.05089549543185967
MGRNEDGERRA	11	Unmodified	_MGRNEDGERRA_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;ENSG00000277149|ENST00000620995|TYW1B;nc|ENSG00000198874|Q9NV66-2|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	645.3271484375	2	645.802017	1289.58948	-2.2279	-0.0014388	-2.8729	-0.0018553	-5.1008	-0.0032941	645.8001448987094	61.397	0.5409	61.192	60.968	61.509	-0.20599					26	12	3	0	0	0	0.024723	1	6908	6908		30.318	20.214	1	309040			51258	10233	35746	35798	56582	56582					-0.043730877530379075
MGRNEDGERRA	11	Unmodified	_MGRNEDGERRA_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;ENSG00000277149|ENST00000620995|TYW1B;nc|ENSG00000198874|Q9NV66-2|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	645.802017	1289.58948	-0.65927	-0.00042576	-4.477	-0.0028912	-5.1362	-0.003317	645.7991323943977	61.141	0.53562	60.965	60.753	61.289	-0.1761	-0.1397	-0.00067243	NaN	30.318	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305470			51259	10233	35746	35798							-0.043730877530379075
MGRNEDGERRA	11	Unmodified	_MGRNEDGERRA_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;ENSG00000277149|ENST00000620995|TYW1B;nc|ENSG00000198874|Q9NV66-2|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	645.802017	1289.58948	-1.0463	-0.00067568	-4.0517	-0.0026166	-5.098	-0.0032923	645.7994519385921	61.414	0.49575	61.157	60.968	61.464	-0.25725	0.05258	-0.00012321	NaN	30.318	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250850			51260	10233	35746	35798							-0.043730877530379075
MGRRLGPAGPH	11	Unmodified	_MGRRLGPAGPH_					0	0	0		ENST00000538010.5_1_12:122499282-122499603:+|nuORF	ENST00000538010.5_1_12:122499282-122499603:+|nuORF	ENST00000538010.5_1_12:122499282-122499603:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.8096923828125	2	574.808916	1147.60328	2.4863	0.0014291	-3.8717	-0.0022255	-1.3855	-0.00079637	574.8064347990075	17.838	0.88269	17.838	17.598	18.48	0					36	17	3	0	0	0	1.0483	1	211	211		25.574	0.12388	1	171010			51261	16384	35747	35799	56583	56583					0.03538234536722484
MGRWSGADLE	10	Unmodified	_MGRWSGADLE_					0	0	0			REV__ENST00000393567.6_2_16:71264491-71264590:-|nuORF	REV__ENST00000393567.6_2_16:71264491-71264590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.2546997070312	2	561.255848	1120.49714	-0.50714	-0.00028464	-1.48	-0.00083065	-1.9871	-0.0011153	561.2549183716083	64.295	1.0019	64.032	63.684	64.686	-0.2626					70	26	5	0	0	0	0.77808	1	7536	7536		62.107	1.1355	1	3631200	+		51262	31649	35748	35800	56584	56584					-0.05828565819274445
MGRWSGADLE	10	Unmodified	_MGRWSGADLE_					0	0	0			REV__ENST00000393567.6_2_16:71264491-71264590:-|nuORF	REV__ENST00000393567.6_2_16:71264491-71264590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.2548217773438	2	561.255848	1120.49714	1.1111	0.00062363	-3.2228	-0.0018088	-2.1116	-0.0011852	561.2539377238572	64.054	1.0661	64.1	63.759	64.825	0.045502					64	28	3	0	0	0	0.52765	1	7441	7441		85.161	16.374	1	3658300	+		51263	31649	35748	35800	56585	56585					-0.05828565819274445
MGSGKLGQIL	10	Unmodified	_MGSGKLGQIL_					0	0	0		ENSG00000197057|ENST00000639862|DTHD1;ENST00000357504.7_1_4:36283341-36292008:+|nuORF	ENSG00000197057|ENST00000639862|DTHD1	ENSG00000197057|ENST00000639862|DTHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2840881347656	2	502.283877	1002.5532	0.84086	0.00042235	-0.3582	-0.00017992	0.48266	0.00024243	502.28360587452937	97.721	0.99725	97.584	97.149	98.146	-0.1367					67	23	4	0	0	0	0.88896	1	12104	12104		54.776	1.8396	1	3017000			51264	9949	35749	35801	56586	56586					0.0520268708819458
MGSQKKMTL	9	Oxidation (M)	_M(Oxidation (M))GSQKKMTL_		M(1)GSQKKMTL		M(71)GSQKKM(-71)TL	0	0	1			REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.2689819335938	2	520.26737	1038.52019	0.37022	0.00019261	2.6174	0.0013617	2.9876	0.0015543	520.2685111733722	75.214	0.70029	75.038	74.689	75.389	-0.17548					52	16	4	0	0	0	0.15366	1	8921	8921		98.629	13.27	2	3275900	+		51265	20385	35750	35802	56587	56587		626			0.0024673697384969273
MGSRGQGLL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MGSRGQGLL_					1	0	0		nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1;ENSG00000173918|ENST00000579760|C1QTNF1	nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1	nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.75091552734375	2	480.750201	959.48585	-0.93611	-0.00045004	0.36519	0.00017556	-0.57093	-0.00027447	480.75035434316624	30.089	1.8478	30.163	29.446	31.294	0.074314					135	44	5	0	0	0	0.18915	1	1931	1931		90.777	13.93	1	7655700			51266	8427	35751	35803	56588	56588					0.00448656877256326
MGSSSFRGGL	10	Oxidation (M)	_M(Oxidation (M))GSSSFRGGL_		M(1)GSSSFRGGL		M(130)GSSSFRGGL	0	0	1		ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7354431152344	2	507.737291	1013.46003	-0.23692	-0.00012029	-3.1402	-0.0015944	-3.3771	-0.0017147	507.73566466638937	39.762	0.93723	39.613	39.357	40.294	-0.1497					58	24	4	0	0	0	0.16213	1	3415	3415		125.81	24.602	1	5937900			51267	16838	35752	35804	56589	56589		544			-0.04616237364996323
MGSSSFRGGL	10	Oxidation (M)	_M(Oxidation (M))GSSSFRGGL_		M(1)GSSSFRGGL		M(130)GSSSFRGGL	0	0	1		ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.73590087890625	2	507.737291	1013.46003	-0.46538	-0.00023629	-2.7617	-0.0014022	-3.2271	-0.0016385	507.73586336683655	39.909	0.95659	39.678	39.352	40.308	-0.23021					65	24	4	0	0	0	0.16213	1	3400	3400		125.81	18.807	1	5986400			51268	16838	35752	35804	56590	56590		544			-0.04616237364996323
MGTAWRDY	8	Unmodified	_MGTAWRDY_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2073974609375	2	500.221277	998.428001	-0.48491	-0.00024256	-2.8696	-0.0014354	-3.3545	-0.001678	500.2193989071586	43.722	0.45537	43.618	43.434	43.889	-0.10468					16	11	2	0	0	0	0.027866	1	4030	4030		47.916	24.873	1	203360			51269	4336	35753	35805	56591	56591					-0.07127605048185615
MGTEMDIMFC	10	Carbamidomethyl (C),2 Oxidation (M)	_M(Oxidation (M))GTEM(Oxidation (M))DIMFC(Carbamidomethyl (C))_	MGTEMDIMFC(1)	M(1)GTEM(0.988)DIM(0.012)FC	MGTEMDIMFC(82)	M(82)GTEM(19)DIM(-19)FC	0	1	2			REV__FAT1-MTNR1A|1|fusion;REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.7295532226562	2	633.729103	1265.44365	-1.8953	-0.0012011	2.0738	0.0013143	0.17856	0.00011316	633.7304617294425	29.234	1.1541	28.989	28.665	29.819	-0.24524					72	26	4	0	0	0	0.55296	1	1764	1764		82.305	27.529	3	2492700	+		51270	20725;36021	35754	35806	56592	56592	266	634;635			-0.17845190699949853
MGTEMDIMFC	10	Carbamidomethyl (C),2 Oxidation (M)	_M(Oxidation (M))GTEM(Oxidation (M))DIMFC(Carbamidomethyl (C))_	MGTEMDIMFC(1)	M(1)GTEM(0.99)DIM(0.01)FC	MGTEMDIMFC(71)	M(70)GTEM(20)DIM(-20)FC	0	1	2			REV__FAT1-MTNR1A|1|fusion;REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.7293090820312	2	633.729103	1265.44365	-0.86939	-0.00055096	0.91354	0.00057894	0.044149	2.7978E-05	633.729840916325	29.072	1.3213	28.899	28.55	29.872	-0.17258					81	30	4	0	0	0	0.65054	2	1735	1735;1771		71.296	14.862	3	2417500	+		51271	20725;36021	35754	35806	56593;56594	56593	266	634;635			-0.17845190699949853
MGTEMDIMFC	10	Carbamidomethyl (C),2 Oxidation (M)	_M(Oxidation (M))GTEM(Oxidation (M))DIMFC(Carbamidomethyl (C))_	MGTEMDIMFC(1)	M(1)GTEM(0.982)DIM(0.018)FC	MGTEMDIMFC(63)	M(62)GTEM(17)DIM(-17)FC	0	1	2			REV__FAT1-MTNR1A|1|fusion;REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.7295532226562	2	633.729103	1265.44365	-0.64816	-0.00041076	0.64641	0.00040965	-0.0017583	-1.1143E-06	633.7296508279001	28.872	1.2646	28.722	28.403	29.668	-0.14952					77	29	5	0	0	0	0.75995	1	1715	1715		63.306	6.8725	3	2792000	+		51272	20725;36021	35754	35806	56595	56595	266	634;635			-0.17845190699949853
MGTEMDIMFC	10	Carbamidomethyl (C),2 Oxidation (M)	_M(Oxidation (M))GTEM(Oxidation (M))DIMFC(Carbamidomethyl (C))_					0	1	2			REV__FAT1-MTNR1A|1|fusion;REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	633.729103	1265.44365	-1.8953	-0.0012011	2.0738	0.0013143	0.17856	0.00011316	633.7304617294425	29.234	1.1541	28.989	28.665	29.819	-0.24524	0.11869	0.0010057	NaN	82.305	72	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2492700	+		51273	20725;36021	35754	35806			266	634;635			-0.17845190699949853
MGTIGAVRSV	10	Oxidation (M)	_M(Oxidation (M))GTIGAVRSV_		M(1)GTIGAVRSV		M(63)GTIGAVRSV	0	0	1			REV__ENST00000514736.1_1_4:178824969-178828914:-|nuORF	REV__ENST00000514736.1_1_4:178824969-178828914:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	503.777099609375	2	503.771134	1005.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.464	1	71.189	70.689	71.689	-0.27509								0	0	0	0.60683	1	8338	8338		63.426	10.49	1		+		51274	34180	35755	35807	56596	56596		930			0.025172125657832112
MGVSRSYTM	9	Unmodified	_MGVSRSYTM_					0	0	0		ENSG00000273540|ENST00000614907|AGBL1;nc|ENSG00000273540|Q96MI9|AGBL1	ENSG00000273540|ENST00000614907|AGBL1	ENSG00000273540|ENST00000614907|AGBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.27001953125	2	516.23607	1030.45759	-0.43662	-0.0002254	-1.2334	-0.00063675	-1.6701	-0.00086214	516.2345661578108	51.213	0.29298	51.064	50.933	51.226	-0.14916					9	7	2	0	0	0	0.023596	1	5396	5396		73.975	2.679	1	108450			51275	11020	35756	35808	56597	56597					-0.05642409094343748
MGVSSLMALV	10	Unmodified	_MGVSSLMALV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2972717285156	2	504.266838	1006.51912	0.1861	9.3844E-05	0.5126	0.00025849	0.6987	0.00035233	504.26569908332056	61.424	0.35507	61.495	61.315	61.67	0.071125					10	8	2	0	0	0	0.03519	1	7046	7046		68.787	0	1	106300			51276	3151	35757	35809	56598	56598					0.016125226049439334
MGWPEARG	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MGWPEARG_					1	0	0		ENST00000598969.5_1_19:19021395-19021764:-|nuORF	ENST00000598969.5_1_19:19021395-19021764:-|nuORF	ENST00000598969.5_1_19:19021395-19021764:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7550354003906	2	473.215995	944.417436	0.82205	0.00038901	3.453	0.001634	4.2751	0.002023	473.2176329328328	39.394	0.33998	39.394	39.254	39.594	0					12	9	2	0	0	0	0.027866	1	3415	3415		76.847	15.875	1	92743			51277	17480	35758	35810	56599	56599					-0.05699587702599729
MGYGLLLIL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MGYGLLLIL_					1	0	0			REV__ENST00000457928.6_1_3:176750886-176751986:-|nuORF	REV__ENST00000457928.6_1_3:176750886-176751986:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7997436523438	2	517.801371	1033.58819	0.49012	0.00025378	-4.3208	-0.0022373	-3.8307	-0.0019835	517.7991702290866	104.61	2.3703	104.45	104.08	106.46	-0.16484					233	88	5	0	0	0	0.48384	1	13091	13091		60.404	12.488	1	26826000	+		51278	32813	35759	35811	56600	56600					0.07273929896177833
MHAAMKYIN	9	Unmodified	_MHAAMKYIN_					0	0	0		ENST00000361549.2_1_12:108912031-108913249:+|nuORF;ENSG00000198855|ENST00000552695|FICD	ENST00000361549.2_1_12:108912031-108913249:+|nuORF	ENST00000361549.2_1_12:108912031-108913249:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.3314208984375	2	539.762255	1077.50996	-0.24315	-0.00013124	1.6559	0.00089378	1.4127	0.00076254	540.2649341043277	67.72	0.89317	67.72	67.285	68.179	0					31	22	2	0	0	0	0.024506	1	8036	8036		23.042	0	1	175330			51279	10227	35760	35812	56601	56601					-0.025698259607224827
MHAAMKYIN	9	Unmodified	_MHAAMKYIN_					0	0	0		ENST00000361549.2_1_12:108912031-108913249:+|nuORF;ENSG00000198855|ENST00000552695|FICD	ENST00000361549.2_1_12:108912031-108913249:+|nuORF	ENST00000361549.2_1_12:108912031-108913249:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.762255	1077.50996	-0.38478	-0.00020769	1.1988	0.00064706	0.81401	0.00043937	539.7631203186587	67.897	0.6845	67.916	67.63	68.314	0.018921	0.097807	-0.00038623	NaN	30.504	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174410			51280	10227	35760	35812							-0.025698259607224827
MHAGAETLA	9	Unmodified	_MHAGAETLA_					0	0	0			REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF	REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2686767578125	2	450.715827	899.417102	-0.89822	-0.00040484	1.527	0.00068826	0.62882	0.00028342	450.71670738543605	37.983	0.17509	37.901	37.743	37.918	-0.082516					8	4	3	0	0	0	0.024354	1	3121	3121		47.916	0	1	151450	+		51281	32364	35761	35813	56602	56602					-0.03663007422460396
MHALVFGNV	9	Unmodified	_MHALVFGNV_					0	0	0		nc|ENSG00000183960|Q96L42-2|KCNH8;ENST00000452398.5_1_3:19388190-19491848:+|nuORF;ENSG00000183960|ENST00000328405|KCNH8	nc|ENSG00000183960|Q96L42-2|KCNH8	nc|ENSG00000183960|Q96L42-2|KCNH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7799987792969	2	494.257662	986.500772	-0.75686	-0.00037409	3.336	0.0016489	2.5792	0.0012748	494.2594162416464	49.67	0.65663	49.744	49.391	50.047	0.074192					34	17	3	0	0	0	0.024381	1	5088	5088		45.952	6.9305	1	423740			51282	9295	35762	35814	56603	56603					0.006981487452549118
MHCVFCCS	8	Unmodified	_MHCVFCCS_					0	0	0			REV__AGTRAP|p.Y107C|1|0.14|ENSG00000177674|chr1:11748566-11748566|A/G|missense_variant	REV__AGTRAP|p.Y107C|1|0.14|ENSG00000177674|chr1:11748566-11748566|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.28717041015625	2	465.160462	928.306371	-0.29659	-0.00013796	0.97382	0.00045298	0.67723	0.00031502	465.1616001756313	75.506	0.11205	75.262	75.191	75.303	-0.24455					4	2	2	0	0	0	0.027866	1	9231	9231		21.702	8.7432	1	56078	+		51283	19089	35763	35815	56604	56604					-0.1606500999820355
MHDCMLLLQ	9	Carbamidomethyl (C),Oxidation (M)	_MHDC(Carbamidomethyl (C))M(Oxidation (M))LLLQ_	MHDC(1)MLLLQ	M(0.002)HDCM(0.998)LLLQ	MHDC(74)MLLLQ	M(-26)HDCM(26)LLLQ	0	1	1			REV__ENST00000527401.5_1_11:45992606-45992897:-|nuORF	REV__ENST00000527401.5_1_11:45992606-45992897:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	588.76708984375	2	588.764137	1175.51372	1.0475	0.00061675	4.4921	0.0026448	5.5396	0.0032615	588.7665839527166	101.09	0.63842	101.08	100.76	101.4	-0.0054474					28	14	3	0	0	0	0.31247	1	12860	12860		73.975	7.5455	2	308110	+		51284	34474	35764	35816	56605	56605	453	938			-0.06701524249160684
MHDCMLLLQ	9	Carbamidomethyl (C),Oxidation (M)	_MHDC(Carbamidomethyl (C))M(Oxidation (M))LLLQ_					0	1	1			REV__ENST00000527401.5_1_11:45992606-45992897:-|nuORF	REV__ENST00000527401.5_1_11:45992606-45992897:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	588.764137	1175.51372	1.0475	0.00061675	4.4921	0.0026448	5.5396	0.0032615	588.7665839527166	101.09	0.63842	101.08	100.76	101.4	-0.0054474	0.063664	-0.0015482	NaN	73.975	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308110	+		51285	34474	35764	35816			453	938			-0.06701524249160684
MHDCMLLLQ	9	Carbamidomethyl (C),Oxidation (M)	_MHDC(Carbamidomethyl (C))M(Oxidation (M))LLLQ_					0	1	1			REV__ENST00000527401.5_1_11:45992606-45992897:-|nuORF	REV__ENST00000527401.5_1_11:45992606-45992897:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	588.764137	1175.51372	0.061472	3.6193E-05	5.5526	0.0032692	5.6141	0.0033054	588.7673237418426	101.12	0.49927	100.99	100.77	101.27	-0.13157	-0.029148	-0.00029935	NaN	73.975	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141540	+		51286	34474	35764	35816			453	938			-0.06701524249160684
MHFESFIT	8	Unmodified	_MHFESFIT_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.71380615234375	2	506.233853	1010.45315	-1.1843	-0.00059954	-3.0095	-0.0015235	-4.1939	-0.0021231	506.23216019566024	29.096	0.77921	28.85	28.578	29.357	-0.24524					37	17	3	0	0	0	0.027866	1	1754	1754		37.028	0	1	438640			51287	163	35765	35817	56606	56606					-0.0516555024560148
MHGFWVCGR	9	Unmodified	_MHGFWVCGR_					0	0	0		ENST00000584053.1_1_17:37896424-37899062:+|nuORF;ENST00000584819.5_1_17:37894608-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	ENST00000584053.1_1_17:37896424-37899062:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2755737304688	2	546.746939	1091.47932	-1.1021	-0.00060259	0.44559	0.00024362	-0.65656	-0.00035897	546.7464193007921	79.795	0.37759	79.816	79.561	79.938	0.021446					13	8	2	0	0	0	0.024487	1	9800	9800		31.955	1.4512	1	77760			51288	17199	35766	35818	56607	56607					-0.06275559555115251
MHHFALNPIF	10	Unmodified	_MHHFALNPIF_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;CFAP61|p.Y/YNRYHLPMYAWPGIVX1223Y/YNRYHLPMYAWPGIVX|1|0.2|ENSG00000089101|chr20:20360364-20360365|-/TAACCGCTACCACCTGCCCATGTACGCGTGGCCAGGCATCGTT|frameshift_variant	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.542724609375	3	409.542821	1225.60663	-0.24943	-0.00010215	-0.86119	-0.0003527	-1.1106	-0.00045485	409.54270309803894	22.128	1.2295	21.926	21.517	22.747	-0.20198					86	25	6	0	0	0	1.0909	1	713	713		33.922	2.2874	1	2848400			51289	259	35767	35819	56608	56608					0.0028548459069952514
MHIALKSN	8	Unmodified	_MHIALKSN_					0	0	0			REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP	REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.2643127441406	2	457.249837	912.485122	0.22756	0.00010405	-0.15951	-7.2938E-05	0.068042	3.1112E-05	457.25135138423155	80.546	0.20377	80.308	80.206	80.409	-0.23784					6	4	2	0	0	0	0.027866	1	9650	9650		37.159	12.956	1	39064	+		51290	37194	35768	35820	56609	56609					0.02537862228200538
MHIDNEVPL	9	Unmodified	_MHIDNEVPL_					0	0	0			REV__ENST00000276602.10_1_8:73926160-73932919:+|nuORF	REV__ENST00000276602.10_1_8:73926160-73932919:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7826538085938	2	534.263142	1066.51173	-1.2958	-0.00069229	2.3439	0.0012522	1.0481	0.00055995	534.2636342020597	75.751	0.29498	75.751	75.586	75.881	0					9	7	2	0	0	0	0.024367	1	9312	9312		62.107	12.666	1	81372	+		51291	29853	35769	35821	56610	56610					-0.0188649367112248
MHKDSMGH	8	Unmodified	_MHKDSMGH_					0	0	0		nc|ENSG00000125775|Q9H190-3|SDCBP2;ENSG00000125775|ENST00000360779|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718505859375	2	471.699654	941.384756	0.72346	0.00034126	-0.8933	-0.00042137	-0.16983	-8.0111E-05	471.69893603609	39.995	0.47296	39.995	39.808	40.281	0					20	12	2	0	0	0	0.027866	1	3459	3459		57.811	20.652	1	162310			51292	4138	35770	35822	56611	56611					-0.08828118097096649
MHKEATSD	8	Unmodified	_MHKEATSD_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2559814453125	2	459.702917	917.391281	-0.9839	-0.0004523	-4.1833	-0.0019231	-5.1672	-0.0023754	459.7008168860078	29.129	0.95376	29.129	28.82	29.773	0					32	23	2	0	0	0	0.027866	1	1806	1806		44.117	9.9443	1	168880			51293	3858	35771	35823	56612	56612					-0.07071901664733105
MHKELKRMM	9	2 Oxidation (M)	_M(Oxidation (M))HKELKRMM(Oxidation (M))_		M(1)HKELKRM(0.079)M(0.921)		M(58)HKELKRM(-11)M(11)	0	0	2			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	618.3046264648438	2	618.306503	1234.59845	-1.517	-0.00093795	-1.6344	-0.0010105	-3.1513	-0.0019485	618.3053281136864	83.428	0.68446	83.454	83.173	83.858	0.026558					40	15	3	0	0	0	0.23085	1	10363	10363		84.916	15.288	3	1024200	+		51294	20949	35772	35824	56613	56613		640;641			-0.009461537125616815
MHKELKRMM	9	2 Oxidation (M)	_M(Oxidation (M))HKELKRMM(Oxidation (M))_					0	0	2			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	618.306503	1234.59845	-1.1747	-0.00072632	-1.8203	-0.0011255	-2.995	-0.0018518	618.3050999490856	83.524	0.94773	83.524	83.18	84.128	0	0.10724	0.0013062	NaN	84.916	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	917480	+		51295	20949	35772	35824				640;641			-0.009461537125616815
MHKELKRMM	9	2 Oxidation (M)	_M(Oxidation (M))HKELKRMM(Oxidation (M))_					0	0	2			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	618.306503	1234.59845	-0.052313	-3.2346E-05	-3.1972	-0.0019768	-3.2495	-0.0020092	618.3043767117783	83.525	0.94521	83.435	83.172	84.117	-0.090446	0.018415	-0.00039646	NaN	84.916	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	984670	+		51296	20949	35772	35824				640;641			-0.009461537125616815
MHKELKRMM	9	2 Oxidation (M)	_M(Oxidation (M))HKELKRMM(Oxidation (M))_					0	0	2			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	618.306503	1234.59845	-1.517	-0.00093795	-1.6344	-0.0010105	-3.1513	-0.0019485	618.3053281136864	83.428	0.68446	83.454	83.173	83.858	0.026558	0.037894	0.0015361	NaN	84.916	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024200	+		51297	20949	35772	35824				640;641			-0.009461537125616815
MHKELKRMM	9	2 Oxidation (M)	_M(Oxidation (M))HKELKRMM(Oxidation (M))_					0	0	2			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	618.306503	1234.59845	-0.2484	-0.00015359	-2.8101	-0.0017375	-3.0585	-0.0018911	618.3044107531886	83.518	0.97593	83.349	83.033	84.009	-0.16915	-0.067247	8.2188E-05	NaN	84.916	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710330	+		51298	20949	35772	35824				640;641			-0.009461537125616815
MHKELKRMM	9	2 Oxidation (M)	_M(Oxidation (M))HKELKRMM(Oxidation (M))_					0	0	2			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	618.306503	1234.59845	0.11254	6.9586E-05	-3.4871	-0.0021561	-3.3745	-0.0020865	618.3043136792617	83.527	0.80746	83.388	83.081	83.888	-0.1386	-0.027947	-0.00075497	NaN	84.916	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732040	+		51299	20949	35772	35824				640;641			-0.009461537125616815
MHKLAVNKL	9	Unmodified	_MHKLAVNKL_					0	0	0			REV__ENSG00000147536|ENST00000276533|GINS4	REV__ENSG00000147536|ENST00000276533|GINS4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.8446655273438	2	527.315512	1052.61647	-0.49939	-0.00026333	0.65833	0.00034715	0.15894	8.3811E-05	527.3131661432012	56.059	0.91657	55.903	55.367	56.284	-0.15602					59	24	4	0	0	0	0.024506	1	6143	6143		38.806	15.764	1	320330	+		51300	24562	35773	35825	56614	56614					0.09226672596105345
MHLNVCTPF	9	Unmodified	_MHLNVCTPF_					0	0	0			REV__nc|ENSG00000174652|Q14584|ZNF266	REV__nc|ENSG00000174652|Q14584|ZNF266	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8169555664062	2	531.24898	1060.48341	0.065802	3.4957E-05	2.0046	0.0010649	2.0704	0.0010999	531.2494021807295	86.039	0.38918	85.844	85.594	85.983	-0.19508					12	8	2	0	0	0	0.024506	1	10409	10409		38.806	8.4884	1	42403	+		51301	26884	35774	35826	56615	56615					-0.04441514852055661
MHLPRTGHFV	10	Unmodified	_MHLPRTGHFV_					0	0	0		ENST00000571370.1_1_17:7589196-7589379:-|nuORF	ENST00000571370.1_1_17:7589196-7589379:-|nuORF	ENST00000571370.1_1_17:7589196-7589379:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	597.85595703125	2	597.813667	1193.61278	-0.5081	-0.00030375	-2.7362	-0.0016357	-3.2443	-0.0019395	597.8120926778852	92.406	0.61364	92.415	92.189	92.803	0.0094147					30	14	3	0	0	0	0.03519	1	11640	11640		40.778	0	1	129720			51302	17037	35775	35827	56616	56616					0.02372002822221475
MHLVDRRKAW	10	Unmodified	_MHLVDRRKAW_					0	0	0			REV__ENSG00000160472|ENST00000291934|TMEM190	REV__ENSG00000160472|ENST00000291934|TMEM190	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.93389892578125	3	437.908274	1310.70299	-0.090101	-3.9456E-05	3.0591	0.0013396	2.969	0.0013001	437.90946012702744	20.389	0.68424	20.221	19.955	20.639	-0.16774					28	13	3	0	0	0	0.03519	1	569	569		27.047	12.269	1	72126	+		51303	25324	35776	35828	56617	56617					0.060070521506531804
MHMLLEEA	8	Unmodified	_MHMLLEEA_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2683410644531	2	487.227713	972.440874	-0.050665	-2.4685E-05	1.2914	0.00062918	1.2407	0.0006045	487.2280182846689	53.721	0.56926	53.721	53.337	53.907	0					21	15	2	0	0	0	0.027866	1	5837	5837		46.766	18.512	1	185620			51304	3042	35777	35829	56618	56618					-0.04644909980288503
MHPVTTTTY	9	Unmodified	_MHPVTTTTY_					0	0	0			REV__ENSG00000204703|ENST00000377173|OR2B3	REV__ENSG00000204703|ENST00000377173|OR2B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2550659179688	2	525.749867	1049.48518	-0.1299	-6.8297E-05	-4.3364	-0.0022799	-4.4663	-0.0023482	526.2511305029581	45.955	0.36977	45.858	45.669	46.039	-0.096649					14	9	2	0	0	0	0.024436	1	4396	4396		38.806	5.2906	1	81298	+		51305	28634	35778	35830	56619	56619					-0.037581825624556586
MHQRALHEGV	10	Unmodified	_MHQRALHEGV_					0	0	0			REV__ENSG00000008197|ENST00000008391|TFAP2D	REV__ENSG00000008197|ENST00000008391|TFAP2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3424682617188	2	589.298381	1176.58221	-0.51515	-0.00030358	-1.832	-0.0010796	-2.3471	-0.0013831	589.2975286916444	92.659	0.36802	92.517	92.211	92.579	-0.14131					14	8	3	0	0	0	0.03519	1	11341	11341		42.396	1.618	1	67379	+		51306	19876	35779	35831	56620	56620					0.0009822443719258445
MHRILMLVRP	10	Unmodified	_MHRILMLVRP_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3692626953125	2	633.370295	1264.72604	-0.4938	-0.00031276	-1.5358	-0.00097272	-2.0296	-0.0012855	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.1267	1	11820	11820		29.15	2.4566	1	9845500			51307	8096	35780	35832	56621	56621					0.1042635494377464
MHSVGGLVEVY	11	Unmodified	_MHSVGGLVEVY_					0	0	0		ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.795654296875	2	595.797349	1189.58014	-0.66078	-0.00039369	-1.6297	-0.00097097	-2.2905	-0.0013647	595.7962758614691	61.063	1.0491	60.857	60.543	61.592	-0.20599					65	25	4	0	0	0	1.0238	1	6828	6828		31.53	3.4483	1	4030500			51308	9177	35781	35833	56622	56622					-0.007062490912630892
MHVISVIKV	9	Unmodified	_MHVISVIKV_					0	0	0		ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3104858398438	2	513.312438	1024.61032	-1.3398	-0.00068773	-2.279	-0.0011698	-3.6187	-0.0018575	513.3112509845884	64.95	1.5666	64.95	64.617	66.184	0					97	42	4	0	0	0	0.62163	1	7679	7679		51.335	5.3835	1	16693000			51309	13633	35782	35834	56623	56623					0.099001543645727
MHVNNYEVA	9	Unmodified	_MHVNNYEVA_					0	0	0			REV__ZNF658|p.K289N|1|0.21|ENSG00000274349|chr9:66918433-66918433|A/T|missense_variant	REV__ZNF658|p.K289N|1|0.21|ENSG00000274349|chr9:66918433-66918433|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7933349609375	2	538.745116	1075.47568	-1.1415	-0.00061496	3.9389	0.0021221	2.7975	0.0015071	538.7471119682224	25.101	0.38109	25.101	24.83	25.211	0					11	8	2	0	0	0	0.024487	1	1137	1137		31.955	8.9124	1	46054	+		51310	37816	35783	35835	56624	56624					-0.05903950847982742
MIAKLVVW	8	Unmodified	_MIAKLVVW_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7803039550781	2	480.290974	958.567395	1.3793	0.00066248	1.4138	0.00067904	2.7931	0.0013415	480.29128929408836	64.139	0.69285	64.139	63.845	64.538	0					35	18	3	0	0	0	0.027866	1	7502	7502		26.796	0	1	1035900			51311	1626	35784	35836	56625	56625					0.0864538430715811
MIAKLVVW	8	Unmodified	_MIAKLVVW_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.290974	958.567395	-0.29422	-0.00014131	2.873	0.0013799	2.5788	0.0012386	480.29214613128374	64.391	0.63333	64.129	63.939	64.572	-0.2626	-0.027553	0.00067064	NaN	7.6903	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	974160			51312	1626	35784	35836							0.0864538430715811
MIAKLVVW	8	Unmodified	_MIAKLVVW_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	480.290974	958.567395	0.8616	0.00041382	1.6708	0.00080248	2.5324	0.0012163	480.29151545098773	64.13	0.59222	64.175	64.011	64.603	0.045502	0.018998	-0.00048415	NaN	7.6903	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	979420			51313	1626	35784	35836							0.0864538430715811
MIAKLVVW	8	Unmodified	_MIAKLVVW_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.290974	958.567395	0.087591	4.2069E-05	2.449	0.0011762	2.5366	0.0012183	480.29198999823836	64.336	0.62666	64.109	64.027	64.654	-0.22773	-0.047634	0.00026337	NaN	7.6903	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168920			51314	1626	35784	35836							0.0864538430715811
MIAKLVVW	8	Unmodified	_MIAKLVVW_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.290974	958.567395	-0.25073	-0.00012042	2.4873	0.0011946	2.2366	0.0010742	480.29211434402066	64.485	0.4657	64.23	64.038	64.504	-0.25563	0.073348	0.0003002	NaN	7.6903	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116260			51315	1626	35784	35836							0.0864538430715811
MIARKHFV	8	Unmodified	_MIARKHFV_					0	0	0			REV__nc|ENSG00000107669|O95260-2|ATE1	REV__nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2904968261719	2	501.289297	1000.56404	-0.38963	-0.00019532	2.2396	0.0011227	1.85	0.00092738	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	1.0572	1	10833	10833		28.254	0.37203	1	8504000	+		51316	36552	35785	35837	56626	56626					0.06378134253156986
MICWTDLN	8	Unmodified	_MICWTDLN_					0	0	0			REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.75128173828125	2	498.219888	994.425224	-0.68246	-0.00034002	2.8172	0.0014036	2.1347	0.0010636	498.2213020263206	39.921	0.99813	39.944	39.597	40.595	0.023319					36	27	2	0	0	0	0.027866	1	3508	3508		38.806	0	1	156110	+		51317	21759	35786	35838	56627	56627					-0.07221196497357596
MIDADSRPK	9	Unmodified	_MIDADSRPK_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;ENST00000485503.1_1_7:55266411-55268235:+|nuORF;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000178568|Q15303-4|ERBB4	ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2741088867188	2	516.760766	1031.50698	-0.45456	-0.0002349	-1.5734	-0.00081309	-2.028	-0.001048	516.7595416995325	45.676	0.47335	45.676	45.548	46.021	0					19	11	3	0	0	0	0.024447	1	4442	4442		25.574	7.312	1	232840			51318	5898;8819	35787	35839	56628	56628					-0.007513778138900307
MIDIFHPSV	9	Unmodified	_MIDIFHPSV_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1;nc|ENSG00000027697|P15260-2|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7857666015625	2	529.770603	1057.52665	-0.2391	-0.00012667	3.9505	0.0020929	3.7114	0.0019662	529.7723833865475	72.647	0.42882	72.37	72.154	72.582	-0.2769					18	9	3	0	0	0	0.022484	1	8501	8501		82.305	0	1	130660			51319	999	35788	35840	56629	56629					0.0001899819685604598
MIDVFKVTKGK	11	Unmodified	_MIDVFKVTKGK_					0	0	0		ENST00000441645.1_1_2:237317014-237317317:-|nuORF	ENST00000441645.1_1_2:237317014-237317317:-|nuORF	ENST00000441645.1_1_2:237317014-237317317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.369384765625	2	633.367941	1264.72133	-0.36915	-0.00023381	2.3072	0.0014613	1.938	0.0012275	633.3692856842331	93.247	1.3144	93.125	92.182	93.497	-0.12215					76	30	4	0	0	0	1.0233	1	11520	11520		31.634	4.587	1	1726300			51320	14364	35789	35841	56630	56630					0.09955749281994031
MIDVFKVTKGK	11	Unmodified	_MIDVFKVTKGK_					0	0	0		ENST00000441645.1_1_2:237317014-237317317:-|nuORF	ENST00000441645.1_1_2:237317014-237317317:-|nuORF	ENST00000441645.1_1_2:237317014-237317317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3698120117188	2	633.367941	1264.72133	-0.4938	-0.00031276	2.181	0.0013814	1.6872	0.0010686	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0075	1	12044	12044		35.152	0.97948	1	9845500			51321	14364	35789	35841	56631	56631					0.09955749281994031
MIEALMIF	8	Unmodified	_MIEALMIF_					0	0	0			REV__ENST00000381165.3_1_17:5392660-5392717:+|nuORF	REV__ENST00000381165.3_1_17:5392660-5392717:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.25372314453125	2	484.2532	966.491847	0.17734	8.5876E-05	0.15159	7.3406E-05	0.32892	0.00015928	484.25323939594875	52.454	1.5806	52.306	51.985	53.566	-0.14723					85	41	4	0	0	0	0.71717	1	5587	5587		65.897	0	1	9733500	+		51322	31508	35790	35842	56632	56632					0.007260390645683401
MIEALMIF	8	Unmodified	_MIEALMIF_					0	0	0			REV__ENST00000381165.3_1_17:5392660-5392717:+|nuORF	REV__ENST00000381165.3_1_17:5392660-5392717:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2535095214844	2	484.2532	966.491847	-0.59929	-0.00029021	0.92564	0.00044825	0.32636	0.00015804	484.25353908571805	52.208	1.3291	52.3	51.967	53.297	0.091938					88	34	5	0	0	0	0.58212	1	5506	5506		77.944	0	1	6796000	+		51323	31508	35790	35842	56633	56633					0.007260390645683401
MIEAVYFTAR	10	Unmodified	_MIEAVYFTAR_					0	0	0			REV__PRKCD|p.A454V|1|0.16|ENSG00000163932|chr3:53187348-53187348|C/T|missense_variant	REV__PRKCD|p.A454V|1|0.16|ENSG00000163932|chr3:53187348-53187348|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.88616943359375	3	400.874236	1199.60088	1.0533	0.00042223	-0.90851	-0.0003642	0.14476	5.8029E-05	400.8745603363432	55.035	0.49957	54.804	54.565	55.065	-0.23087					16	13	2	0	0	0	0.03519	1	5866	5866		24.232	0	1	81774	+		51324	37404	35791	35843	56634	56634					0.009063412883961064
MIEIVEMK	8	Unmodified	_MIEIVEMK_					0	0	0			REV__ENST00000457695.2_1_X:100110922-100111255:-|nuORF	REV__ENST00000457695.2_1_X:100110922-100111255:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.28472900390625	2	496.761389	991.508225	0.19753	9.8128E-05	2.8458	0.0014137	3.0433	0.0015118	496.76260826352905	63.468	0.619	63.21	62.876	63.495	-0.25824					28	15	2	0	0	0	0.027866	1	7117	7117		30.504	0	1	241080	+		51325	31991	35792	35844	56635	56635					0.012131202306704836
MIEKIKRG	8	Unmodified	_MIEKIKRG_					0	0	0			REV__ENST00000455311.6_3_16:25025246-25026645:-|nuORF	REV__ENST00000455311.6_3_16:25025246-25026645:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7908020019531	2	487.794412	973.574271	-0.64792	-0.00031605	-4.3443	-0.0021191	-4.9922	-0.0024352	487.79227441876844	78.361	1.7343	78.377	77.989	79.724	0.015907					129	41	5	0	0	0	0.39824	1	9677	9677		97.473	8.8298	1	12051000	+		51326	32777	35793	35845	56636	56636					0.0864269718772448
MIEKVERHI	9	Oxidation (M)	_M(Oxidation (M))IEKVERHI_		M(1)IEKVERHI		M(51)IEKVERHI	0	0	1		ENST00000442521.1_1_2:208489125-208490436:-|nuORF	ENST00000442521.1_1_2:208489125-208490436:-|nuORF	ENST00000442521.1_1_2:208489125-208490436:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.818603515625	2	585.818615	1169.62268	0.20688	0.00012119	-0.72014	-0.00042187	-0.51326	-0.00030068	585.8181857204193	18.923	2.876	18.767	18.495	21.371	-0.15637					102	58	4	0	0	0	0.62163	1	347	347		51.335	6.9583	1	2198100			51327	14383	35794	35846	56637	56637		506			0.04465146036955048
MIEKVERHI	9	Oxidation (M)	_M(Oxidation (M))IEKVERHI_		M(1)IEKVERHI		M(66)IEKVERHI	0	0	1		ENST00000442521.1_1_2:208489125-208490436:-|nuORF	ENST00000442521.1_1_2:208489125-208490436:-|nuORF	ENST00000442521.1_1_2:208489125-208490436:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.8184814453125	2	585.818615	1169.62268	-0.21429	-0.00012554	-0.16137	-9.4532E-05	-0.37566	-0.00022007	585.818468831878	18.987	2.9929	18.784	18.51	21.503	-0.20371					127	60	4	0	0	0	0.39228	1	382	382		66.429	15.237	1	1770400			51328	14383	35794	35846	56638	56638		506			0.04465146036955048
MIEKVERHI	9	Oxidation (M)	_M(Oxidation (M))IEKVERHI_		M(1)IEKVERHI		M(72)IEKVERHI	0	0	1		ENST00000442521.1_1_2:208489125-208490436:-|nuORF	ENST00000442521.1_1_2:208489125-208490436:-|nuORF	ENST00000442521.1_1_2:208489125-208490436:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.8184814453125	2	585.818615	1169.62268	1.3018	0.00076263	-1.4929	-0.00087458	-0.1911	-0.00011195	585.8177074786114	19.038	3.0515	18.805	18.483	21.534	-0.23345					108	61	4	0	0	0	0.32811	2	345	337;345		71.877	15.156	1	956800			51329	14383	35794	35846	56639;56640	56640		506			0.04465146036955048
MIELPLIIA	9	Unmodified	_MIELPLIIA_					0	0	0			REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8110656738281	2	506.809196	1011.60384	-0.76084	-0.0003856	3.5796	0.0018142	2.8188	0.0014286	506.8111194725813	54.608	1.2505	54.608	54.214	55.464	0					119	35	5	0	0	0	0.4855	2	5951	5951;5960		60.294	6.9425	1	40876000	+		51330	33807	35795	35847	56641;56642	56641					0.0985021641321282
MIELPLIIA	9	Unmodified	_MIELPLIIA_					0	0	0			REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8106689453125	2	506.809196	1011.60384	-0.18697	-9.4759E-05	3.1908	0.0016172	3.0039	0.0015224	506.8109227453703	54.675	1.2537	54.525	54.156	55.409	-0.15036					111	35	5	0	0	0	0.4855	1	5977	5977		60.294	3.5729	1	35785000	+		51331	33807	35795	35847	56643	56643					0.0985021641321282
MIEMMKKW	8	Unmodified	_MIEMMKKW_					0	0	0			REV__ENST00000449832.1_1_2:160545868-160546547:-|nuORF	REV__ENST00000449832.1_1_2:160545868-160546547:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.3265380859375	2	548.771234	1095.52791	-0.41735	-0.00022903	0.70509	0.00038693	0.28774	0.00015791	548.7708534929938	69.128	0.49884	68.897	68.719	69.217	-0.23048					19	11	3	0	0	0	0.027866	1	7998	7998		40.778	12.524	1	116230	+		51332	32687	35796	35848	56644	56644					-0.01602827030228582
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.803466796875	2	575.799891	1149.58523	-0.14486	-8.3408E-05	0.77581	0.00044671	0.63096	0.00036331	575.8004027600522	53.344	0.97282	53.217	52.874	53.847	-0.12705					61	27	4	0	0	0	0.03666	2	5582	5582;5598		136.27	51.353	1	3498500			51333	2642	35797	35849	56645;56646	56645					0.01642054771355106
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8037109375	2	575.799891	1149.58523	-0.3266	-0.00018806	0.46143	0.00026569	0.13483	7.7636E-05	575.7999969385322	53.544	0.7122	53.285	52.961	53.674	-0.25838					44	19	3	0	0	0	0.03666	3	5605	5605;5617;5629		136.27	56.817	1	4078500			51334	2642	35797	35849	56647;56648;56649	56647					0.01642054771355106
MIEPRTLQY	9	Unmodified	_MIEPRTLQY_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8018188476562	2	575.799891	1149.58523	-0.38197	-0.00021994	0.25837	0.00014877	-0.1236	-7.1169E-05	575.8000012607414	53.452	0.74575	53.255	52.934	53.68	-0.19739					46	20	4	0	0	0	0.030064	3	5598	5587;5598;5611		141.52	58.77	1	4003100			51335	2642	35797	35849	56650;56651;56652	56651					0.01642054771355106
MIFFWDYD	8	Unmodified	_MIFFWDYD_					0	0	0			REV__ENSG00000033100|ENST00000035307|CHPF2	REV__ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.81103515625	2	568.741511	1135.46847	-0.22908	-0.00013029	0.16328	9.2863E-05	-0.065805	-3.7426E-05	568.741284938872	69.35	0.37384	69.127	68.852	69.226	-0.22245					21	8	4	0	0	0	0.027866	1	8040	8040		26.796	10.323	1	362330	+		51336	20051	35798	35850	56653	56653					-0.09384683448411124
MIFGCFALF	9	Unmodified	_MIFGCFALF_					0	0	0		ENST00000460518.1_1_6:133108648-133118195:-|nuORF;ENSG00000146409|ENST00000275227|SLC18B1	ENST00000460518.1_1_6:133108648-133118195:-|nuORF	ENST00000460518.1_1_6:133108648-133118195:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2691040039062	2	524.753367	1047.49218	-0.50847	-0.00026682	0.34656	0.00018186	-0.16191	-8.4963E-05	524.7534709765848	34.944	0.10972	34.994	34.91	35.02	0.050251					4	2	2	0	0	0	0.024475	1	2582	2582		21.702	7.5652	1	39901			51337	5878	35799	35851	56654	56654					-0.029665412155964077
MIFGLDVVE	9	Unmodified	_MIFGLDVVE_					0	0	0		ENSG00000189023|ENST00000399988|MAGEB16	ENSG00000189023|ENST00000399988|MAGEB16	ENSG00000189023|ENST00000399988|MAGEB16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.7801513671875	2	511.764986	1021.51542	-0.26002	-0.00013307	4.2787	0.0021897	4.0186	0.0020566	511.76720225740127	92.677	0.38437	92.685	92.587	92.971	0.0077209					10	8	2	0	0	0	0.024	1	11719	11719		45.952	0	1	41925			51338	9781	35800	35852	56655	56655					0.005521761027353023
MIFLVAETVE	10	Unmodified	_MIFLVAETVE_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.305419921875	2	576.304475	1150.5944	-0.53082	-0.00030592	0.21529	0.00012407	-0.31553	-0.00018184	576.3043312354232	95.99	1.1974	95.833	95.269	96.466	-0.15646					52	27	3	0	0	0	1.0665	1	11851	11851		37.159	0	1	789640	+		51339	20285	35801	35853	56656	56656					0.025124033370275356
MIFSTRLMI	9	Oxidation (M)	_M(Oxidation (M))IFSTRLMI_		M(1)IFSTRLMI		M(75)IFSTRLM(-75)I	0	0	1			REV__PIGN|p.G167Vfs*33|1|0.28|ENSG00000197563|chr18:62154594-62154594|C/-|frameshift_variant	REV__PIGN|p.G167Vfs*33|1|0.28|ENSG00000197563|chr18:62154594-62154594|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.2998046875	2	564.301213	1126.58787	-0.00012427	-7.0126E-08	-2.7677	-0.0015618	-2.7678	-0.0015619	564.299558126796	74.706	1.167	74.447	74.158	75.325	-0.25887					77	28	4	0	0	0	0.23085	1	9107	9107		84.916	10.66	2	2219400	+		51340	37373	35802	35854	56657	56657		987			0.02964186904637245
MIFYAKIN	8	Unmodified	_MIFYAKIN_					0	0	0		nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-2|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178	nc|ENSG00000166960|Q5BJE1-3|CCDC178	nc|ENSG00000166960|Q5BJE1-3|CCDC178	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7922668457031	2	500.270238	998.525924	0.25058	0.00012536	-3.5411	-0.0017715	-3.2905	-0.0016461	500.26782880224056	52.598	0.53104	52.69	52.445	52.976	0.091938					22	13	2	0	0	0	0.027866	1	5581	5581		19.36	0	1	344610			51341	7633	35803	35855	56658	56658					0.0266020354780494
MIFYLLEI	8	Unmodified	_MIFYLLEI_					0	0	0		SLAIN2-CWH43|2|fusion;ENSG00000109182|ENST00000226432|CWH43	SLAIN2-CWH43|2|fusion	SLAIN2-CWH43|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.2890625	2	521.288097	1040.56164	-1.3189	-0.00068751	4.2641	0.0022228	2.9453	0.0015353	521.2905263906736	62.778	0.79021	62.778	62.335	63.126	0					55	20	4	0	0	0	0.52467	1	7323	7323		83.287	1.5712	1	1943400			51342	37877	35804	35856	56659	56659					0.04298241004812553
MIFYVFCY	8	Unmodified	_MIFYVFCY_					0	0	0			REV__ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	REV__ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2440185546875	2	543.245375	1084.4762	-0.93321	-0.00050696	1.683	0.0009143	0.74982	0.00040734	543.2449757333122	67.185	3.5011	66.947	66.571	70.072	-0.23814					162	87	3	0	0	0	0.8525	1	7741	7741		54.895	21.402	1	2397200	+		51343	19064	35805	35857	56660	56660					-0.06266247452481366
MIGGFHLPT	9	Unmodified	_MIGGFHLPT_					0	0	0		ENST00000337198.9_1_8:103855961-103870277:-|nuORF;ENST00000347770.8_1_8:103862280-103870277:-|nuORF	ENST00000337198.9_1_8:103855961-103870277:-|nuORF	ENST00000337198.9_1_8:103855961-103870277:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2794189453125	2	486.752213	971.489873	-0.31011	-0.00015095	1.5891	0.00077348	1.279	0.00062254	486.7529913585427	51.047	0.61179	50.898	50.723	51.335	-0.14916					22	16	2	0	0	0	0.024262	1	5392	5392		38.806	17.859	1	335290			51344	12416	35806	35858	56661	56661					0.002987463709473559
MIGHRSIT	8	Unmodified	_MIGHRSIT_					0	0	0		ENST00000466229.5_1_1:196648727-196709933:+|nuORF;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2591857910156	2	457.747462	913.480371	0.073819	3.3791E-05	-4.1527	-0.0019009	-4.0788	-0.0018671	457.74534050137083	61.719	0.82999	61.719	61.144	61.974	0					30	21	2	0	0	0	0.027866	1	7113	7113		37.159	15.199	1	212300			51345	716	35807	35859	56662	56662					0.0201697808543031
MIGIFHIF	8	Unmodified	_MIGIFHIF_					0	0	0		nc|ENSG00000204979|Q5J8X5-3|MS4A13;nc|ENSG00000204979|Q5J8X5-2|MS4A13;ENSG00000204979|ENST00000378186|MS4A13	nc|ENSG00000204979|Q5J8X5-3|MS4A13	nc|ENSG00000204979|Q5J8X5-3|MS4A13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2521667480469	2	489.267499	976.520445	-0.83719	-0.00040961	1.3921	0.00068111	0.55491	0.0002715	489.26786407757106	64.783	0.67712	64.821	64.44	65.117	0.037384					26	17	2	0	0	0	0.027866	1	7590	7590		33.493	0	1	98456			51346	10398	35808	35860	56663	56663					0.031245247560150347
MIGIKKVQ	8	Unmodified	_MIGIKKVQ_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.7878112792969	2	458.786056	915.557558	-1.5662	-0.00071855	4.0915	0.0018771	2.5253	0.0011586	458.7879005444892	92.294	1.8204	92.151	91.661	93.481	-0.14356					148	42	6	0	0	0	1.0133	1	11385	11385		35.201	5.3592	1	24204000			51347	4914	35809	35861	56664	56664					0.09640196301768356
MIGILALVN	9	Unmodified	_MIGILALVN_					0	0	0			REV__nc|ENSG00000164078|Q04912-2|MST1R	REV__nc|ENSG00000164078|Q04912-2|MST1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.28778076171875	2	472.285889	942.557224	0.59468	0.00028086	2.9557	0.0013959	3.5504	0.0016768	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	0.85941	1	12102	12102		35.201	0	1	51888000	+		51348	25687	35810	35862	56665	56665					0.08364776581913702
MIGKLRSD	8	Unmodified	_MIGKLRSD_					0	0	0		USP24|p.E2610K|1|0.37|ENSG00000162402|chr1:55069080-55069080|C/T|missense_variant	USP24|p.E2610K|1|0.37|ENSG00000162402|chr1:55069080-55069080|C/T|missense_variant	USP24|p.E2610K|1|0.37|ENSG00000162402|chr1:55069080-55069080|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.28076171875	2	460.25512	918.495686	0.019714	9.0733E-06	-0.54432	-0.00025052	-0.5246	-0.00024145	460.2537649322379	71.457	0.98883	71.195	70.69	71.679	-0.26199					37	23	3	0	0	0	0.027866	1	8300	8300		53.351	20.539	1	159580			51349	38136	35811	35863	56666	56666					0.033178448826333806
MIGKPQQSV	9	Unmodified	_MIGKPQQSV_					0	0	0			REV__nc|ENSG00000077514|Q15054-3|POLD3	REV__nc|ENSG00000077514|Q15054-3|POLD3	MSMS	OPSCC_40_ClassI_Rep-1	4	494.2652282714844	2	494.268227	986.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.794	1	74.518	74.018	75.018	-0.27573								0	0	0	0.10746	1	8817	8817		90.777	8.4716	1		+		51350	20593	35812	35864	56667	56667					0.028101140541139102
MIGKPQQSV	9	Unmodified	_MIGKPQQSV_					0	0	0			REV__nc|ENSG00000077514|Q15054-3|POLD3	REV__nc|ENSG00000077514|Q15054-3|POLD3	MSMS	OPSCC_40_ClassI_Rep-3	6	494.2655944824219	2	494.268227	986.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.609	1	74.427	73.927	74.927	-0.18279								0	0	0	0.21285	1	8793	8793		74.255	2.3776	1		+		51351	20593	35812	35864	56668	56668					0.028101140541139102
MIGPVVIAL	9	Unmodified	_MIGPVVIAL_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-3|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-3|IGSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.313232421875	2	456.782982	911.55141	-1.0777	-0.00049226	-3.5275	-0.0016113	-4.6052	-0.0021036	456.779912825544	44.522	0.43059	44.377	44.131	44.561	-0.14471					16	12	2	0	0	0	0.024289	1	4263	4263		39.021	19.662	1	126790	+		51352	36763	35813	35865	56669	56669					0.09209678070249083
MIHFAPNVFVL	11	Unmodified	_MIHFAPNVFVL_					0	0	0		ENSG00000160111|ENST00000443236|CPAMD8;nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	644.3497924804688	2	644.349551	1286.68455	2.0421	0.0013158	-1.7652	-0.0011374	0.27691	0.00017843	644.3482775431247	110.37	0.78791	110.37	110.02	110.81	0					74	23	5	0	0	0	1.0442	1	14031	14031		26.693	2.1737	1	637790			51353	6781	35814	35866	56670	56670					0.05267497456088677
MIHLCIYAV	9	Unmodified	_MIHLCIYAV_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000443339.5_1_3:9475802-9506425:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8167114257812	2	531.777373	1061.54019	0.00065067	3.4601E-07	3.0737	0.0016345	3.0743	0.0016348	531.7784704874904	84.828	0.82765	84.828	84.587	85.414	0					18	11	3	0	0	0	0.024475	1	10704	10704		21.702	2.5988	1	58041			51354	18490	35815	35867	56671	56671					0.011885327044410587
MIHLCIYAV	9	Unmodified	_MIHLCIYAV_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000443339.5_1_3:9475802-9506425:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.777373	1061.54019	0.28618	0.00015218	3.4719	0.0018463	3.7581	0.0019985	531.7780737601109	84.827	0.34033	84.624	84.459	84.8	-0.20329	-0.036528	0.00010336	NaN	29.842	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41942			51355	18490	35815	35867							0.011885327044410587
MIHLCIYAV	9	Unmodified	_MIHLCIYAV_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000443339.5_1_3:9475802-9506425:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.777373	1061.54019	0.30784	0.0001637	3.5971	0.0019129	3.905	0.0020766	531.7785997638674	84.722	0.49405	84.564	84.364	84.858	-0.15869	-0.096376	0.00023652	NaN	29.842	16	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82686			51356	18490	35815	35867							0.011885327044410587
MIHLCIYAV	9	Unmodified	_MIHLCIYAV_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000443339.5_1_3:9475802-9506425:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.777373	1061.54019	0.39899	0.00021217	3.3142	0.0017624	3.7132	0.0019746	531.7783234921923	84.763	0.42162	84.625	84.406	84.828	-0.13789	-0.034977	-6.4348E-05	NaN	29.842	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66949			51357	18490	35815	35867							0.011885327044410587
MIHLLAHDPD	10	Unmodified	_MIHLLAHDPD_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.261962890625	2	581.289691	1160.56483	-0.8623	-0.00050125	-0.60991	-0.00035454	-1.4722	-0.00085578	581.2889041407623	31.456	0.37185	31.303	31.045	31.417	-0.15231					12	9	2	0	0	0	0.03519	1	2044	2044		37.159	11.585	1	35946			51358	3893	35816	35868	56672	56672					-0.009031158884681645
MIHSSFQKA	9	Unmodified	_MIHSSFQKA_					0	0	0			REV__nc|ENSG00000211803|A0A075B6W5|TRAV23DV6	REV__nc|ENSG00000211803|A0A075B6W5|TRAV23DV6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.810546875	2	524.765852	1047.51715	-1.1586	-0.00060797	2.2738	0.0011932	1.1153	0.00058526	524.7668180719746	55.973	0.4743	55.757	55.45	55.924	-0.21551					20	12	2	0	0	0	0.024487	1	6034	6034		17.365	0	1	201210	+		51359	37110	35817	35869	56673	56673					-0.004707700886456223
MIHYSDKV	8	Unmodified	_MIHYSDKV_					0	0	0			REV__ENSG00000155621|ENST00000334731|C9orf85	REV__ENSG00000155621|ENST00000334731|C9orf85	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.2712707519531	2	496.747127	991.479702	-0.23285	-0.00011567	-3.8189	-0.001897	-4.0518	-0.0020127	496.74495269169046	38.871	0.44504	38.645	38.361	38.806	-0.2257					21	11	2	0	0	0	0.027866	1	3209	3209		33.516	0	1	289810	+		51360	25014	35818	35870	56674	56674					-0.01637861354265624
MIIFLIIGTN	10	Oxidation (M)	_M(Oxidation (M))IIFLIIGTN_		M(1)IIFLIIGTN		M(74)IIFLIIGTN	0	0	1			REV__SLC38A4|p.C345Lfs*4|1|0.18|ENSG00000139209|chr12:46778328-46778329|-/A|frameshift_variant	REV__SLC38A4|p.C345Lfs*4|1|0.18|ENSG00000139209|chr12:46778328-46778329|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.7879638671875	2	575.83066	1149.64677	-0.73061	-0.00042071	-2.2309	-0.0012846	-2.9615	-0.0017053	575.8290256085751	69.104	0.92384	69.119	68.83	69.754	0.015121					67	23	6	0	0	0	0.03519	1	8215	8215		74.255	19.49	1	843380	+		51361	23926	35819	35871	56675	56675		711			0.07792986470667529
MIIGLKQY	8	Unmodified	_MIIGLKQY_					0	0	0			REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.27850341796875	2	483.278063	964.541574	0.10143	4.9018E-05	1.7267	0.00083448	1.8281	0.00088349	483.2789944074833	94.34	1.8423	94.192	93.392	95.234	-0.14771					94	42	4	0	0	0	1.0574	1	11620	11620		26.796	0.10319	1	1094700	+		51362	33349	35820	35872	56676	56676					0.057884900648673465
MIIHCAGLRN	10	Carbamidomethyl (C)	_MIIHC(Carbamidomethyl (C))AGLRN_	MIIHC(1)AGLRN		MIIHC(50)AGLRN		0	1	0			REV__PREX2|p.P1555Hfs*11|1|0.2|ENSG00000046889|chr8:68217674-68217674|C/-|frameshift_variant	REV__PREX2|p.P1555Hfs*11|1|0.2|ENSG00000046889|chr8:68217674-68217674|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	592.8045654296875	2	592.804985	1183.59542	0.30107	0.00017847	-1.1522	-0.00068305	-0.85117	-0.00050458	592.8041857601709	25.82	0.8741	25.9	25.581	26.455	0.08009					62	20	4	0	0	0	0.96083	1	1210	1210		50.025	12.213	1	2408200	+		51363	20118	35821	35873	56677	56677	258				0.010963392249323078
MIILSHIYI	9	Oxidation (M)	_M(Oxidation (M))IILSHIYI_		M(1)IILSHIYI		M(80)IILSHIYI	0	0	1		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8153076171875	2	559.817553	1117.62055	-0.54512	-0.00030517	-3.0451	-0.0017047	-3.5903	-0.0020099	559.8157653628313	80.904	2.796	80.904	79.911	82.707	0					244	67	6	0	0	0	0.26797	1	10042	10042		79.939	8.6435	1	11331000			51364	4760	35822	35874	56678	56678		191			0.06644717299150216
MIIMIVPML	9	Unmodified	_MIIMIVPML_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8018798828125	2	530.802003	1059.58945	-0.041967	-2.2276E-05	-0.78011	-0.00041408	-0.82207	-0.00043636	530.8014096275714	101.08	0.966	100.96	100.71	101.68	-0.12576					52	22	3	0	0	0	0.65391	1	12606	12606		49.211	3.2588	1	1241600	+		51365	28417	35823	35875	56679	56679					0.06204104669063781
MIITTIVEA	9	Unmodified	_MIITTIVEA_					0	0	0		ENST00000427764.3_1_1:23637350-23637437:-|nuORF	ENST00000427764.3_1_1:23637350-23637437:-|nuORF	ENST00000427764.3_1_1:23637350-23637437:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.7805480957031	2	495.780636	989.546719	0.51242	0.00025405	-0.80505	-0.00039913	-0.29263	-0.00014508	495.78005374565015	89.197	1.0102	89.175	88.822	89.833	-0.021645					61	23	4	0	0	0	0.43973	1	11231	11231		63.306	3.0123	1	1633500			51366	14118	35824	35876	56680	56680					0.051527491368347
MIIVIYFM	8	Unmodified	_MIIVIYFM_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3131103515625	2	515.279218	1028.54388	0.10678	5.5022E-05	0.92901	0.0004787	1.0358	0.00053372	515.2795417745739	88.35	0.12828	88.35	88.255	88.383	0					4	2	2	0	0	0	0.027866	1	11132	11132		16.705	0	1	34236	+		51367	22439	35825	35877	56681	56681					0.030752024783168963
MIKCLLMY	8	Unmodified	_MIKCLLMY_					0	0	0			REV__ENSG00000108671|ENST00000261712|PSMD11	REV__ENSG00000108671|ENST00000261712|PSMD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2798767089844	2	507.762877	1013.5112	-1.0107	-0.0005132	-2.0177	-0.0010245	-3.0284	-0.0015377	507.7609743417006	48.299	0.5185	48.023	47.738	48.257	-0.27598					23	13	2	0	0	0	0.027866	1	4745	4745		21.702	0	1	716200	+		51368	21756	35826	35878	56682	56682					0.0049867208381328965
MIKIAYDAD	9	Unmodified	_MIKIAYDAD_					0	0	0			REV__ENST00000553618.1_1_14:67665960-67666731:+|nuORF	REV__ENST00000553618.1_1_14:67665960-67666731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8228149414062	2	520.260068	1038.50558	-0.94047	-0.00048929	3.7926	0.0019732	2.8522	0.0014839	520.2623263001072	81.006	0.5114	81.006	80.707	81.218	0					16	12	2	0	0	0	0.024405	1	10112	10112		35.618	0	1	127570	+		51369	24234	35827	35879	56683	56683					-0.012130119026551256
MIKIESDLL	9	Oxidation (M)	_M(Oxidation (M))IKIESDLL_		M(1)IKIESDLL		M(170)IKIESDLL	0	0	1			REV__ENSG00000165916|ENST00000298852|PSMC3	REV__ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2962646484375	2	539.29665	1076.57875	-0.21094	-0.00011376	-3.603	-0.0019431	-3.814	-0.0020569	539.2943051635774	87.592	1.2345	87.592	87.321	88.555	0					83	29	4	0	0	0	0.014013	1	11026	11026		166.78	17.796	1	2299100	+		51370	25945	35828	35880	56684	56684		767			0.04352116819973162
MIKIESDLL	9	Oxidation (M)	_M(Oxidation (M))IKIESDLL_		M(1)IKIESDLL		M(140)IKIESDLL	0	0	1			REV__ENSG00000165916|ENST00000298852|PSMC3	REV__ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.2960815429688	2	539.29665	1076.57875	0.17714	9.5529E-05	-4.308	-0.0023233	-4.1308	-0.0022277	539.2939028209901	87.588	1.1502	87.608	87.347	88.497	0.019333					71	27	4	0	0	0	0.027092	1	10940	10940		143.89	7.6186	1	2272200	+		51371	25945	35828	35880	56685	56685		767			0.04352116819973162
MIKIESDLL	9	Oxidation (M)	_M(Oxidation (M))IKIESDLL_		M(1)IKIESDLL		M(130)IKIESDLL	0	0	1			REV__ENSG00000165916|ENST00000298852|PSMC3	REV__ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2968139648438	2	539.29665	1076.57875	-0.49213	-0.0002654	-3.2373	-0.0017458	-3.7294	-0.0020112	539.2946175074579	87.608	1.0112	87.429	87.112	88.123	-0.17874					59	24	4	0	0	0	0.057894	1	10672	10672		125.81	8.9104	1	1205400	+		51372	25945	35828	35880	56686	56686		767			0.04352116819973162
MIKIESDLL	9	Oxidation (M)	_M(Oxidation (M))IKIESDLL_		M(1)IKIESDLL		M(110)IKIESDLL	0	0	1			REV__ENSG00000165916|ENST00000298852|PSMC3	REV__ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2958984375	2	539.29665	1076.57875	0.10041	5.4148E-05	-3.8302	-0.0020656	-3.7298	-0.0020115	539.2943240781929	87.542	0.88828	87.406	87.178	88.067	-0.13613					52	21	4	0	0	0	0.10174	1	10650	10650		110.12	16.977	1	1277600	+		51373	25945	35828	35880	56687	56687		767			0.04352116819973162
MIKLICINS	9	Unmodified	_MIKLICINS_					0	0	0			REV__ENST00000402738.5_1_4:89629283-89629379:+|nuORF	REV__ENST00000402738.5_1_4:89629283-89629379:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2915649414062	2	517.790481	1033.56641	0.7948	0.00041154	-2.8062	-0.001453	-2.0114	-0.0010415	517.7905406005052	54.603	0.41512	54.397	54.159	54.575	-0.20613					15	10	2	0	0	0	0.023007	1	5821	5821		47.657	12.039	1	238700	+		51374	31874	35829	35881	56688	56688					0.05096801875924939
MIKLICINS	9	Unmodified	_MIKLICINS_					0	0	0			REV__ENST00000402738.5_1_4:89629283-89629379:+|nuORF	REV__ENST00000402738.5_1_4:89629283-89629379:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.790481	1033.56641	-0.23737	-0.00012291	-12.218	-0.0063266	-12.456	-0.0064495	517.7846080022254	54.877	0.42022	54.726	54.474	54.894	-0.15036	0.21741	-0.0071915	NaN	47.657	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273060	+		51375	31874	35829	35881							0.05096801875924939
MIKLICINS	9	Unmodified	_MIKLICINS_					0	0	0			REV__ENST00000402738.5_1_4:89629283-89629379:+|nuORF	REV__ENST00000402738.5_1_4:89629283-89629379:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	517.790481	1033.56641	0.1139	5.8976E-05	-4.9915	-0.0025846	-4.8776	-0.0025256	518.2884830817773	54.634	0.37989	54.403	54.15	54.53	-0.23087	-0.10558	0.00029266	NaN	47.657	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168070	+		51376	31874	35829	35881							0.05096801875924939
MIKPIIRQL	9	Oxidation (M)	_M(Oxidation (M))IKPIIRQL_		M(1)IKPIIRQL		M(63)IKPIIRQL	0	0	1			REV__nc|ENSG00000171483|Q7RTT6|SSX6P	REV__nc|ENSG00000171483|Q7RTT6|SSX6P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.3504028320312	2	564.352094	1126.68964	0.17147	9.6772E-05	-2.5007	-0.0014113	-2.3292	-0.0013145	564.350623197877	81.226	0.82034	80.997	80.617	81.437	-0.2289					49	19	4	0	0	0	0.43973	1	9749	9749		63.306	7.8021	1	707920	+		51377	36931	35830	35882	56689	56689		976			0.13135801318708218
MIKPIIRQL	9	Oxidation (M)	_M(Oxidation (M))IKPIIRQL_					0	0	1			REV__nc|ENSG00000171483|Q7RTT6|SSX6P	REV__nc|ENSG00000171483|Q7RTT6|SSX6P	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	564.352094	1126.68964	0.17147	9.6772E-05	-2.5007	-0.0014113	-2.3292	-0.0013145	564.350623197877	81.226	0.82034	80.997	80.617	81.437	-0.2289	-0.001119	-0.00019118	NaN	63.306	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	707920	+		51378	36931	35830	35882				976			0.13135801318708218
MIKPIIRQL	9	Oxidation (M)	_M(Oxidation (M))IKPIIRQL_					0	0	1			REV__nc|ENSG00000171483|Q7RTT6|SSX6P	REV__nc|ENSG00000171483|Q7RTT6|SSX6P	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.352094	1126.68964	0.30238	0.00017065	-2.1639	-0.0012212	-1.8616	-0.0010506	564.3512012130509	81.185	1.0758	80.991	80.6	81.676	-0.19333	-0.0065776	0.00018889	NaN	63.306	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695980	+		51379	36931	35830	35882				976			0.13135801318708218
MIKYQVFYV	9	Unmodified	_MIKYQVFYV_					0	0	0			REV__ENSG00000164485|ENST00000296980|IL22RA2	REV__ENSG00000164485|ENST00000296980|IL22RA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	594.8273315429688	2	595.817553	1189.62055	-0.65589	-0.00039079	-2.1762	-0.0012966	-2.8321	-0.0016874	596.3175761301047	46.802	0.51735	46.854	46.544	47.061	0.051395					17	13	2	0	0	0	0.024466	1	4580	4580		33.516	19.378	1	171880	+		51380	25760	35831	35883	56690	56690					0.033327172991448606
MIKYQVFYV	9	Unmodified	_MIKYQVFYV_					0	0	0			REV__ENSG00000164485|ENST00000296980|IL22RA2	REV__ENSG00000164485|ENST00000296980|IL22RA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	595.817553	1189.62055	-0.47235	-0.00028143	-6.2876	-0.0037463	-6.7599	-0.0040277	595.8133518256235	46.738	0.28555	46.641	46.539	46.825	-0.096649	-0.18151	-0.0029596	NaN	33.516	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136450	+		51381	25760	35831	35883							0.033327172991448606
MIKYQVFYV	9	Unmodified	_MIKYQVFYV_					0	0	0			REV__ENSG00000164485|ENST00000296980|IL22RA2	REV__ENSG00000164485|ENST00000296980|IL22RA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	595.817553	1189.62055	-0.54002	-0.00032175	-5.9884	-0.003568	-6.5284	-0.0038898	595.8138641073542	47.087	0.42177	46.817	46.628	47.05	-0.26939	-0.0051873	-0.0026031	NaN	33.516	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164840	+		51382	25760	35831	35883							0.033327172991448606
MIKYQVFYV	9	Unmodified	_MIKYQVFYV_					0	0	0			REV__ENSG00000164485|ENST00000296980|IL22RA2	REV__ENSG00000164485|ENST00000296980|IL22RA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	595.817553	1189.62055	-0.75932	-0.00045242	-4.8956	-0.0029169	-5.6549	-0.0033693	595.8142949015377	46.907	0.36882	46.713	46.481	46.85	-0.19387	-0.1093	-0.0013009	NaN	33.516	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149790	+		51383	25760	35831	35883							0.033327172991448606
MILDAVVIN	9	Unmodified	_MILDAVVIN_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7975769042969	2	494.280803	986.547053	0.2798	0.0001383	0.27401	0.00013544	0.55381	0.00027374	494.28173138466434	50.98	0.42566	50.98	50.642	51.067	0					19	11	2	0	0	0	0.023596	1	5389	5389		63.306	0	1	95872	+		51384	23836	35832	35884	56691	56691					0.053241688566799894
MILDLLFVT	9	Unmodified	_MILDLLFVT_					0	0	0			REV__HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	REV__HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7848510742188	2	532.806654	1063.59875	-0.61285	-0.00032653	-1.255	-0.00066865	-1.8678	-0.00099518	532.8056314607833	45.845	1.8475	45.845	45.548	47.395	0					128	51	5	0	0	0	0.024381	1	4659	4659		29.15	11.785	1	34981000	+		51385	25773	35833	35885	56692	56692					0.06949912550589943
MILFPVVF	8	Unmodified	_MILFPVVF_					0	0	0			REV__ENSG00000129048|ENST00000249887|ACKR4	REV__ENSG00000129048|ENST00000249887|ACKR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2787170410156	2	483.280075	964.545597	-0.51301	-0.00024793	-1.9217	-0.00092874	-2.4347	-0.0011767	483.2792227885441	94.336	1.9734	94.198	93.181	95.155	-0.13779					109	45	5	0	0	0	1.0241	1	11608	11608		33.493	5.6107	1	1254500	+		51386	23029	35834	35886	56693	56693					0.06190579558585796
MILIFTRK	8	Unmodified	_MILIFTRK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MSMS	OPSCC_40_ClassI_Rep-2	5	511.3143005371094	2	511.31498	1020.61541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.604	1	51.327	50.827	51.827	-0.27643								0	0	0	0.5562	1	5299	5299		51.335	1.3109	1				51387	4715	35835	35887	56694	56694					0.10592458227199586
MILIILQV	8	Unmodified	_MILIILQV_					0	0	0		ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.8084716796875	2	471.806457	941.598361	1.222	0.00057656	2.8768	0.0013573	4.0988	0.0019339	471.80772834128663	40.691	1.3073	40.568	40.267	41.574	-0.12318					85	36	4	0	0	0	0.52467	1	3584	3584		83.287	9.0321	1	7885700			51388	38201	35836	35888	56695	56695					0.12522537621396168
MILKLMAF	8	Unmodified	_MILKLMAF_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.64678955078125	2	483.779385	965.544217	-0.014646	-7.0856E-06	0.45911	0.00022211	0.44446	0.00021502	483.77941074532015	46.946	0.52498	46.677	46.452	46.977	-0.26939					22	14	2	0	0	0	0.027866	1	4554	4554		25.45	1.2474	1	751220			51389	1708	35837	35889	56696	56696					0.06006622198185596
MILLALIN	8	Unmodified	_MILLALIN_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2684326171875	2	450.782982	899.55141	0.46135	0.00020797	4.2243	0.0019042	4.6856	0.0021122	450.78390133007713	49.078	0.1712	49.078	49.005	49.176	0					6	4	2	0	0	0	0.027866	1	5038	5038		35.201	0	1	68993			51390	8686	35838	35890	56697	56697					0.09761678070265134
MILLGIMSYS	10	Unmodified	_MILLGIMSYS_					0	0	0		ENST00000311936.7_1_12:25362125-25362311:-|nuORF	ENST00000311936.7_1_12:25362125-25362311:-|nuORF	ENST00000311936.7_1_12:25362125-25362311:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.2965087890625	2	564.295596	1126.57664	-0.36867	-0.00020804	-0.41724	-0.00023545	-0.78591	-0.00044349	564.2948391550461	103.66	0.78692	103.65	103.36	104.14	-0.0032196					44	18	4	0	0	0	1.0142	1	13238	13238		44.117	3.3386	1	271780			51391	12086	35839	35891	56698	56698					0.01841364810502455
MILLSVIDS	9	Unmodified	_MILLSVIDS_					0	0	0		ENST00000598190.1_1_19:53158623-53158719:-|nuORF	ENST00000598190.1_1_19:53158623-53158719:-|nuORF	ENST00000598190.1_1_19:53158623-53158719:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7818603515625	2	495.780636	989.546719	0.17533	8.6923E-05	-0.51402	-0.00025484	-0.33869	-0.00016792	495.7801236667535	90.497	2.8053	90.359	89.488	92.293	-0.13824					136	66	4	0	0	0	0.59099	1	11050	11050		53.351	1.0523	1	1209800			51392	17466	35840	35892	56699	56699					0.051527491368233314
MILPTVIGLN	10	Unmodified	_MILPTVIGLN_					0	0	0			REV__ENSG00000236398|ENST00000446620|TAS2R39	REV__ENSG00000236398|ENST00000446620|TAS2R39	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.814697265625	2	535.817553	1069.62055	-0.45371	-0.00024311	1.6406	0.00087905	1.1869	0.00063594	535.8181289021057	97.867	0.68063	97.867	97.594	98.275	0					24	15	2	0	0	0	1.0393	1	12491	12491		40.778	2.9666	1	103830	+		51393	28933	35841	35893	56700	56700					0.08852717299168944
MILQRISP	8	Unmodified	_MILQRISP_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2798767089844	2	479.281137	956.547722	1.2416	0.00059509	-4.286	-0.0020542	-3.0443	-0.0014591	479.2789221522539	58.951	1.1419	58.951	58.495	59.637	0					85	30	4	0	0	0	0.37125	3	6688	6688;6711;6723		101.21	0	1	6852400	+		51394	22799	35842	35894	56701;56702;56703	56701					0.0677100829640267
MILQRISP	8	Unmodified	_MILQRISP_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2803649902344	2	479.281137	956.547722	0.45286	0.00021705	-3.4178	-0.0016381	-2.965	-0.0014211	479.2793452328716	58.812	1.0979	58.898	58.481	59.579	0.086258					87	29	4	0	0	0	0.65272	2	6608	6608;6636		71.378	18.026	1	6738700	+		51395	22799	35842	35894	56704;56705	56704					0.0677100829640267
MILQRQRIYT	10	Unmodified	_MILQRQRIYT_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7144470214844	3	441.251818	1320.73363	-0.13855	-6.1137E-05	2.6928	0.0011882	2.5542	0.0011271	441.25283982795	31.567	0.84309	31.636	31.166	32.009	0.06896					35	20	3	0	0	0	0.03519	1	2011	2011		21.686	0	1	132570	+		51396	24556	35843	35895	56706	56706					0.08608785745059322
MILQRQRIYT	10	Unmodified	_MILQRQRIYT_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	441.251818	1320.73363	-0.2065	-9.1117E-05	3.0452	0.0013437	2.8387	0.0012526	441.2529593580379	31.93	0.63303	31.93	31.591	32.224	0	0.14404	0.00040744	NaN	16.007	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230790	+		51397	24556	35843	35895							0.08608785745059322
MILQRQRIYT	10	Unmodified	_MILQRQRIYT_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	441.251818	1320.73363	-0.12708	-5.6074E-05	2.1222	0.00093641	1.9951	0.00088033	441.25245384521975	31.779	0.47863	31.791	31.545	32.023	0.011797	0.0054553	-0.00081448	NaN	16.007	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214350	+		51398	24556	35843	35895							0.08608785745059322
MILQTPPVQ	9	Unmodified	_MILQTPPVQ_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8313598632812	2	513.786253	1025.55795	-0.22421	-0.0001152	-0.11639	-5.9798E-05	-0.3406	-0.00017499	513.7861429603994	67.536	0.39616	67.248	66.992	67.388	-0.28834					16	9	2	0	0	0	0.023454	1	8039	8039		82.241	5.3939	1	322220	+		51399	27555	35844	35896	56707	56707					0.04619571230955444
MILRENPD	8	Unmodified	_MILRENPD_					0	0	0		ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79705810546875	2	494.250034	986.485516	-0.20778	-0.0001027	-3.3869	-0.001674	-3.5947	-0.0017767	494.2481651317467	51.015	0.52935	50.866	50.626	51.155	-0.14916					23	14	2	0	0	0	0.027866	1	5395	5395		65.803	5.5092	1	355790			51400	17439	35845	35897	56708	56708					-0.008267628425983276
MILTKQRMI	9	Unmodified	_MILTKQRMI_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3292846679688	2	567.330304	1132.64606	-0.38591	-0.00021894	-0.48756	-0.00027661	-0.87347	-0.00049555	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	0.77768	2	11260	11248;11260		40.778	3.6629	1	4298500			51401	2142	35846	35898	56709;56710	56710					0.08503868549951221
MILTLQWGV	9	Unmodified	_MILTLQWGV_					0	0	0		ENST00000496112.5_1_7:44252178-44252295:+|nuORF	ENST00000496112.5_1_7:44252178-44252295:+|nuORF	ENST00000496112.5_1_7:44252178-44252295:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.7597045898438	2	530.79662	1059.57869	0.88563	0.00047009	-3.6941	-0.0019608	-2.8085	-0.0014907	530.7942870190028	96.651	0.99931	96.651	96.191	97.191	-3.8147E-05					48	22	3	0	0	0	0.023061	1	12266	12266		90.37	40.345	1	205470			51402	15559	35847	35899	56711	56711					0.051281616106280126
MILTLQWGV	9	Unmodified	_MILTLQWGV_					0	0	0		ENST00000496112.5_1_7:44252178-44252295:+|nuORF	ENST00000496112.5_1_7:44252178-44252295:+|nuORF	ENST00000496112.5_1_7:44252178-44252295:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.79662	1059.57869	0.6192	0.00032867	-4.324	-0.0022952	-3.7048	-0.0019665	530.7938127083802	96.95	0.35628	96.813	96.613	96.969	-0.1367	0.12184	-0.0011393	NaN	90.37	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44456			51403	15559	35847	35899							0.051281616106280126
MILTVLALSA	10	Unmodified	_MILTVLALSA_					0	0	0			REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.3138427734375	2	516.312103	1030.60965	0.29486	0.00015224	2.9401	0.001518	3.2349	0.0016702	516.3135620168821	97.895	2.6352	97.906	97.149	99.785	0.010239					201	60	6	0	0	0	1.0992	1	12502	12502		32.812	6.0163	1	30092000	+		51404	25732	35848	35900	56712	56712					0.09557314924882121
MILTVLALSA	10	Unmodified	_MILTVLALSA_					0	0	0			REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3141479492188	2	516.312103	1030.60965	0.62813	0.00032431	2.0739	0.0010708	2.702	0.0013951	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	1.1267	1	12098	12098		29.15	2.4566	1	32395000	+		51405	25732	35848	35900	56713	56713					0.09557314924882121
MILVENTLN	9	Unmodified	_MILVENTLN_					0	0	0		ENST00000348405.8_1_4:83784502-83784532:-|nuORF	ENST00000348405.8_1_4:83784502-83784532:-|nuORF	ENST00000348405.8_1_4:83784502-83784532:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.7791137695312	2	523.781167	1045.54778	-0.796	-0.00041693	-2.6427	-0.0013842	-3.4387	-0.0018011	523.7797122819186	78.341	1.8153	78.341	77.632	79.447	0					98	43	4	0	0	0	0.19099	1	9702	9702		90.37	2.6155	1	2018900			51406	12581	35849	35901	56714	56714					0.026829635057538326
MILVENTLN	9	Unmodified	_MILVENTLN_					0	0	0		ENST00000348405.8_1_4:83784502-83784532:-|nuORF	ENST00000348405.8_1_4:83784502-83784532:-|nuORF	ENST00000348405.8_1_4:83784502-83784532:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.7793579101562	2	523.781167	1045.54778	0.44086	0.00023092	-3.825	-0.0020035	-3.3841	-0.0017725	523.7790393340343	78.526	1.485	78.334	77.604	79.089	-0.19211					88	35	3	0	0	0	0.22902	2	9654	9654;9703		85.161	7.5202	1	1940700			51407	12581	35849	35901	56715;56716	56715					0.026829635057538326
MILVWLLF	8	Unmodified	_MILVWLLF_					0	0	0			REV__ENST00000513585.5_1_5:112312534-112328375:+|nuORF	REV__ENST00000513585.5_1_5:112312534-112328375:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2738037109375	2	517.808999	1033.60345	-0.74634	-0.00038646	-2.7028	-0.0013995	-3.4492	-0.001786	517.8074009368889	45.681	0.84787	45.53	45.178	46.026	-0.15156					59	24	3	0	0	0	0.027866	1	4399	4399		24.504	0.30126	1	888350	+		51408	33995	35850	35902	56717	56717					0.08798841484008335
MIMADKVR	8	Unmodified	_MIMADKVR_					0	0	0		ENST00000566665.1_1_16:10273773-10274277:-|nuORF	ENST00000566665.1_1_16:10273773-10274277:-|nuORF	ENST00000566665.1_1_16:10273773-10274277:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.279052734375	2	482.259348	962.504143	0.69685	0.00033606	3.5034	0.0016896	4.2003	0.0020256	482.2611437815512	81.703	1.1897	81.475	81.105	82.295	-0.2289					35	27	2	0	0	0	0.027866	1	9905	9905		21.702	0	1	187830			51409	16945	35851	35903	56718	56718					0.021390755276001983
MIMADKVR	8	Unmodified	_MIMADKVR_					0	0	0		ENST00000566665.1_1_16:10273773-10274277:-|nuORF	ENST00000566665.1_1_16:10273773-10274277:-|nuORF	ENST00000566665.1_1_16:10273773-10274277:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	482.259348	962.504143	-0.32833	-0.00015834	3.4574	0.0016673	3.129	0.001509	482.2611261050135	81.605	0.96539	81.462	80.817	81.782	-0.14249	-0.0060518	-2.5976E-05	NaN	26.796	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176030			51410	16945	35851	35903							0.021390755276001983
MIMRVLVVN	9	Oxidation (M)	_M(Oxidation (M))IMRVLVVN_		M(1)IMRVLVVN		M(36)IM(-36)RVLVVN	0	0	1			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.8131103515625	2	545.809205	1089.60386	-0.49619	-0.00027083	2.2472	0.0012265	1.751	0.00095569	545.8102985256902	53.748	0.98847	53.748	53.404	54.393	0					76	27	4	0	0	0	0.25032	1	5847	5847		82.305	29.368	2	4925300	+		51411	25055	35852	35904	56719	56719		743			0.06263893141567678
MIMRVLVVN	9	Oxidation (M)	_M(Oxidation (M))IMRVLVVN_		M(1)IMRVLVVN		M(35)IM(-35)RVLVVN	0	0	1			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.8117065429688	2	545.809205	1089.60386	-1.2007	-0.00065534	3.0237	0.0016504	1.8231	0.00099504	545.8107216000413	53.552	0.95615	53.648	53.336	54.292	0.095669					83	26	4	0	0	0	0.31247	1	5732	5732		73.975	20.623	2	4834000	+		51412	25055	35852	35904	56720	56720		743			0.06263893141567678
MINLLVRLD	9	Unmodified	_MINLLVRLD_					0	0	0			REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8197631835938	2	543.820627	1085.6267	-0.91661	-0.00049847	2.0881	0.0011356	1.1715	0.00063709	543.8203714709691	47.785	1.7405	47.632	47.265	49.005	-0.153					176	50	6	0	0	0	0.25032	1	4820	4820		82.305	14.811	1	24001000	+		51413	24197	35853	35905	56721	56721					0.08731235530694903
MINSIFEAILQ	11	Unmodified	_MINSIFEAILQ_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.844970703125	2	639.841756	1277.66896	0.9476	0.00060631	1.6579	0.0010608	2.6055	0.0016671	640.3440601921316	99.976	0.55881	99.976	99.704	100.26	0					30	14	3	0	0	0	0.87596	1	12796	12796		53.089	1.8963	1	724450			51414	3786	35854	35906	56722	56722					0.04123166148406199
MINSIFEAILQ	11	Unmodified	_MINSIFEAILQ_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.3472900390625	2	639.841756	1277.66896	-0.3483	-0.00022286	2.6862	0.0017187	2.3379	0.0014959	639.8427864803843	100.12	0.5573	99.947	99.726	100.28	-0.17088					41	18	3	0	0	0	0.75995	1	12433	12433		60.118	8.7828	1	1080000			51415	3786	35854	35906	56723	56723					0.04123166148406199
MINTFFGAKSP	11	Unmodified	_MINTFFGAKSP_					0	0	0			REV__nc|ENSG00000177301|P16389-2|KCNA2	REV__nc|ENSG00000177301|P16389-2|KCNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.88775634765625	3	404.874236	1211.60088	0.59055	0.0002391	-0.78092	-0.00031617	-0.19037	-7.7076E-05	404.8738246432744	17.795	0.14996	17.589	17.464	17.614	-0.20669					4	2	2	0	0	0	0.024753	1	219	219		22.781	9.2734	1	19956	+		51416	27101	35855	35907	56724	56724					0.00354341288402793
MIPAPPCRA	9	Unmodified	_MIPAPPCRA_					0	0	0		ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2347412109375	2	478.24624	954.477928	-0.73622	-0.00035209	-0.76434	-0.00036554	-1.5006	-0.00071764	478.24575557019983	39.697	0.57476	39.585	39.255	39.83	-0.11223					23	15	2	0	0	0	0.024436	1	3454	3454		30.504	8.8013	1	129780			51417	13318	35856	35908	56725	56725					-0.001131936438696357
MIPAPPCRA	9	Unmodified	_MIPAPPCRA_					0	0	0		ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.24624	954.477928	0.89297	0.00042706	-2.5707	-0.0012294	-1.6777	-0.00080235	478.24485540751726	39.654	0.76685	39.654	39.112	39.879	0	-0.064042	-0.0017443	NaN	30.504	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137650			51418	13318	35856	35908							-0.001131936438696357
MIPAPPCRA	9	Unmodified	_MIPAPPCRA_					0	0	0		ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.24624	954.477928	-0.74364	-0.00035564	0.22343	0.00010686	-0.5202	-0.00024878	478.24590329261036	39.891	0.45432	39.915	39.598	40.052	0.023727	0.197	0.0009282	NaN	30.504	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140220			51419	13318	35856	35908							-0.001131936438696357
MIPERKQL	8	Oxidation (M)	_M(Oxidation (M))IPERKQL_		M(1)IPERKQL		M(66)IPERKQL	0	0	1		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.7902221679688	2	515.789327	1029.5641	-0.45891	-0.0002367	4.4787	0.0023101	4.0198	0.0020734	515.7909589775821	52.346	1.0341	52.346	51.977	53.011	0					43	26	2	0	0	0	0.71833	1	5605	5605		65.803	7.9919	1	1751200			51420	7906	35857	35909	56726	56726		324			0.050500894624974535
MIPLTVGIV	9	Unmodified	_MIPLTVGIV_					0	0	0			REV__ENSG00000205060|ENST00000378509|SLC35B4	REV__ENSG00000205060|ENST00000378509|SLC35B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7899475097656	2	471.788264	941.561975	-0.2047	-9.6575E-05	3.5255	0.0016633	3.3208	0.0015667	471.7899415927755	47.76	1.308	47.819	47.554	48.862	0.059097					114	37	5	0	0	0	0.36105	1	4741	4741		68.485	6.3773	1	46020000	+		51421	28656	35858	35910	56727	56727					0.08885660724695299
MIPVPYIE	8	Unmodified	_MIPVPYIE_					0	0	0		CRK|p.V187I|1|0.16|ENSG00000167193|chr17:1436838-1436838|C/T|missense_variant	CRK|p.V187I|1|0.16|ENSG00000167193|chr17:1436838-1436838|C/T|missense_variant	CRK|p.V187I|1|0.16|ENSG00000167193|chr17:1436838-1436838|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.79736328125	2	481.256797	960.499041	0.19419	9.3455E-05	-3.645	-0.0017542	-3.4508	-0.0016607	481.25475874751834	69.292	1.3145	69.292	68.6	69.915	0					63	33	3	0	0	0	0.027866	1	8267	8267		65.897	11.133	1	221300			51422	588	35859	35911	56728	56728					0.017210949366244677
MIPVPYIE	8	Unmodified	_MIPVPYIE_					0	0	0		CRK|p.V187I|1|0.16|ENSG00000167193|chr17:1436838-1436838|C/T|missense_variant	CRK|p.V187I|1|0.16|ENSG00000167193|chr17:1436838-1436838|C/T|missense_variant	CRK|p.V187I|1|0.16|ENSG00000167193|chr17:1436838-1436838|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7972717285156	2	481.256797	960.499041	-0.44959	-0.00021637	-3.43	-0.0016507	-3.8796	-0.0018671	481.25508459671295	69.319	1.1942	69.335	68.76	69.955	0.015129					58	30	2	0	0	0	0.027866	1	8190	8190		46.766	16.925	1	252990			51423	588	35859	35911	56729	56729					0.017210949366244677
MIQNSPDNI	9	Unmodified	_MIQNSPDNI_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;ENST00000486151.5_1_10:49386068-49414901:-|nuORF	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2716674804688	2	516.244949	1030.47534	-1.0129	-0.00052292	-2.9834	-0.0015402	-3.9963	-0.0020631	516.7461877502797	39.371	0.4534	39.272	39.163	39.616	-0.098755					17	12	2	0	0	0	0.024381	1	3409	3409		37.159	8.9048	1	122050			51424	8024	35860	35912	56730	56730					-0.038673705678547776
MIQNSPDNI	9	Unmodified	_MIQNSPDNI_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2;ENST00000486151.5_1_10:49386068-49414901:-|nuORF	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.244949	1030.47534	0.019725	1.0183E-05	1.3198	0.00068134	1.3395	0.00069153	516.2468890562652	39.386	0.2199	39.16	39.059	39.279	-0.2257	-0.055954	0.0024584	NaN	44.377	8	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62030			51425	8024	35860	35912							-0.038673705678547776
MIQPSSPKCAH	11	Unmodified	_MIQPSSPKCAH_					0	0	0			REV__ENST00000273158.8_1_3:39431013-39431945:+|nuORF	REV__ENST00000273158.8_1_3:39431013-39431945:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	400.1956481933594	3	400.195093	1197.56345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.897	1	83.759	83.259	84.259	-0.13822								0	0	0	0.93599	1	10124	10124		50.034	16.994	1		+		51426	29820	35861	35913	56731	56731					-0.02743073248871042
MIQRKMCILFS	11	Unmodified	_MIQRKMCILFS_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.241943359375	3	457.243278	1368.708	0.10117	4.626E-05	-3.3201	-0.0015181	-3.2189	-0.0014718	457.2416903802945	71.606	0.81465	71.344	70.824	71.638	-0.26199					52	19	4	0	0	0	1.0371	1	8377	8377		28.577	0.49524	1	1490700			51427	8590	35862	35914	56732	56732					0.038398519067641246
MIQRKMCILFS	11	Unmodified	_MIQRKMCILFS_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	457.243278	1368.708	0.64283	0.00029393	-4.2647	-0.00195	-3.6219	-0.0016561	457.24141965450633	71.453	0.82214	71.247	70.877	71.699	-0.20613	-0.06096	-0.00084888	NaN	28.577	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1145100			51428	8590	35862	35914							0.038398519067641246
MIQSAVLNSMD	11	Unmodified	_MIQSAVLNSMD_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.7860107421875	2	604.786124	1207.55769	-0.17027	-0.00010298	0.80598	0.00048744	0.63571	0.00038447	604.7864209744399	74.363	2.0435	74.1	73.889	75.933	-0.26326					91	49	3	0	0	0	0.58492	1	8779	8779		70.816	1.1886	1	2263300	+		51429	22059	35863	35915	56733	56733					-0.037782165511998755
MIQTIFTTI	9	Unmodified	_MIQTIFTTI_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2733764648438	2	534.293911	1066.57327	0.25611	0.00013684	0.15048	8.0402E-05	0.40659	0.00021724	534.2939987742238	88.616	0.76895	88.589	88.217	88.986	-0.027657					31	17	2	0	0	0	0.023093	1	11171	11171		63.534	0.22758	1	93502			51430	1074	35864	35916	56734	56734					0.04264438028144468
MIRELDVPV	9	Unmodified	_MIRELDVPV_					0	0	0			REV__ENSG00000012211|ENST00000599218|PRICKLE3	REV__ENSG00000012211|ENST00000599218|PRICKLE3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2965087890625	2	536.296985	1070.57942	0.44044	0.00023621	-3.8985	-0.0020908	-3.4581	-0.0018546	536.2948844185134	63.068	1.7	63.122	62.719	64.419	0.054104					91	44	4	0	0	0	0.43973	1	7280	7280		63.306	9.9548	1	13351000	+		51431	19943	35865	35917	56735	56735					0.046949562596637406
MIRKREVK	8	Unmodified	_MIRKREVK_					0	0	0		ENST00000507465.1_1_5:32387797-32388629:-|nuORF	ENST00000507465.1_1_5:32387797-32388629:-|nuORF	ENST00000507465.1_1_5:32387797-32388629:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8031005859375	2	530.326411	1058.63827	0.3278	0.00017384	0.28905	0.00015329	0.61685	0.00032713	530.3268166108701	64.186	0.14062	64.186	64.097	64.238	0					5	3	2	0	0	0	0.027866	1	7536	7536		38.806	3.6054	1	93523			51432	15763	35866	35918	56736	56736					0.11129477344661609
MIRLGPVL	8	Unmodified	_MIRLGPVL_					0	0	0			REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.77886962890625	2	449.780773	897.546994	0.49227	0.00022142	-4.2916	-0.0019303	-3.7994	-0.0017089	449.7787585312412	67.773	1.6521	67.773	67.285	68.938	0					102	42	4	0	0	0	0.61897	2	8082	8072;8082		74.517	3.1387	1	7631000	+		51433	32507	35867	35919	56737;56738	56738					0.09412213647351564
MIRLGPVL	8	Unmodified	_MIRLGPVL_					0	0	0			REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7796630859375	2	449.780773	897.546994	0.36003	0.00016193	-4.0886	-0.001839	-3.7286	-0.001677	449.77884689252295	68.133	1.5177	67.845	67.347	68.864	-0.28834					104	38	4	0	0	0	0.48546	3	8169	8094;8106;8169		86.935	8.9908	1	7105400	+		51434	32507	35867	35919	56739;56740;56741	56741					0.09412213647351564
MIRLGPVL	8	Unmodified	_MIRLGPVL_					0	0	0			REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7792053222656	2	449.780773	897.546994	0.38028	0.00017104	-4.0711	-0.0018311	-3.6909	-0.0016601	449.778851411549	67.892	1.6712	67.911	67.466	69.137	0.018913					110	43	4	0	0	0	0.61897	2	8029	8007;8029		74.517	3.1387	1	6770300	+		51435	32507	35867	35919	56742;56743	56743					0.09412213647351564
MIRLPGLV	8	Unmodified	_MIRLPGLV_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|64|3|sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|64|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7788391113281	2	449.780773	897.546994	0.49227	0.00022142	-4.2916	-0.0019303	-3.7994	-0.0017089	449.7787585312412	67.773	1.6521	67.773	67.285	68.938	0					102	42	4	0	0	0	0.75307	2	8093	8093;8130		62.978	0	1	7631000	+		51436	37693	35868	35920	56744;56745	56744					0.09412213647340195
MIRLPGLV	8	Unmodified	_MIRLPGLV_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|64|3|sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|64|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.779296875	2	449.780773	897.546994	0.36003	0.00016193	-4.0886	-0.001839	-3.7286	-0.001677	449.77884689252295	68.133	1.5177	67.845	67.347	68.864	-0.28834					104	38	4	0	0	0	0.61897	3	8157	8118;8130;8157		74.517	0	1	7105400	+		51437	37693	35868	35920	56746;56747;56748	56748					0.09412213647340195
MIRLPGLV	8	Unmodified	_MIRLPGLV_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|64|3|sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|64|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7792053222656	2	449.780773	897.546994	0.38028	0.00017104	-4.0711	-0.0018311	-3.6909	-0.0016601	449.778851411549	67.892	1.6712	67.911	67.466	69.137	0.018913					110	43	4	0	0	0	0.48546	1	8066	8066		86.935	0	1	6770300	+		51438	37693	35868	35920	56749	56749					0.09412213647340195
MIRQVFPS	8	Unmodified	_MIRQVFPS_					0	0	0		ENST00000535260.5_1_12:27143460-27143541:-|nuORF	ENST00000535260.5_1_12:27143460-27143541:-|nuORF	ENST00000535260.5_1_12:27143460-27143541:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2653503417969	2	489.265487	976.516422	0.10189	4.9851E-05	-1.1023	-0.0005393	-1.0004	-0.00048945	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.78609	1	5991	5991		60.294	4.7898	1	81379000			51439	16345	35869	35921	56750	56750					0.02722435262307954
MIRQVFPS	8	Unmodified	_MIRQVFPS_					0	0	0		ENST00000535260.5_1_12:27143460-27143541:-|nuORF	ENST00000535260.5_1_12:27143460-27143541:-|nuORF	ENST00000535260.5_1_12:27143460-27143541:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2623291015625	2	489.265487	976.516422	-0.89132	-0.00043609	-0.25197	-0.00012328	-1.1433	-0.00055937	489.2655824203169	55.918	2.8631	55.703	54.857	57.72	-0.21551					203	76	5	0	0	0	0.81662	1	5970	5970		57.811	8.3697	1	70664000			51440	16345	35869	35921	56751	56751					0.02722435262307954
MIRRKVSQST	10	Unmodified	_MIRRKVSQST_					0	0	0			REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	REV__TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	602.759521484375	2	603.342789	1204.67103	-0.41275	-0.00024903	-0.55149	-0.00033274	-0.96424	-0.00058177	603.342152264402	57.93	0.22834	57.739	57.56	57.789	-0.19017					9	5	3	0	0	0	0.03519	1	6330	6330		31.53	18.076	1	123720	+		51441	27396	35870	35922	56752	56752					0.07687639676851177
MIRTAAPL	8	Unmodified	_MIRTAAPL_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MSMS	OPSCC_40_ClassI_Rep-2	5	436.7550964355469	2	436.754756	871.494958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.005	1	22.819	22.319	23.319	-0.18539								0	0	0	0.44619	1	861	861		60.972	0.67798	1		+		51442	20899	35871	35923	56753	56753					0.05407050233577593
MIRTAAPL	8	Unmodified	_MIRTAAPL_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7554016113281	2	436.754756	871.494958	1.5916	0.00069513	-1.4027	-0.00061262	0.18892	8.251E-05	436.75399640960234	22.975	0.63737	22.784	22.572	23.209	-0.19117					34	13	3	0	0	0	0.77775	1	833	833		60.972	0.67798	1	735090	+		51443	20899	35871	35923	56754	56754					0.05407050233577593
MISAIVIND	9	Unmodified	_MISAIVIND_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2816162109375	2	488.26261	974.510668	0.092793	4.5307E-05	-0.49219	-0.00024032	-0.3994	-0.00019501	488.2623849698332	80.806	0.40683	80.66	80.532	80.939	-0.146					16	9	2	0	0	0	0.023635	1	9673	9673		76.774	41.156	1	109290	+		51444	28049	35872	35924	56755	56755					0.02239291959961065
MISEIHNYN	9	Unmodified	_MISEIHNYN_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.7537231445312	2	560.758223	1119.50189	-1.0277	-0.00057628	-1.8057	-0.0010125	-2.8333	-0.0015888	560.7570424645332	55.678	0.83368	55.522	55.178	56.011	-0.15655					48	22	4	0	0	0	0.48817	1	5989	5989		60.118	7.1816	1	3010700	+		51445	23247	35873	35925	56756	56756					-0.05307681676504217
MISEIHNYN	9	Unmodified	_MISEIHNYN_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.75390625	2	560.758223	1119.50189	-1.2589	-0.00070596	-1.6931	-0.00094941	-2.952	-0.0016554	560.7569786353592	55.761	0.77036	55.546	55.268	56.038	-0.21551					49	20	4	0	0	0	0.42604	1	5988	5988		64.207	11.271	1	2829400	+		51446	23247	35873	35925	56757	56757					-0.05307681676504217
MISIVGFLSP	10	Unmodified	_MISIVGFLSP_					0	0	0		ENSG00000144746|ENST00000273258|ARL6IP5;ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2947998046875	2	532.296453	1062.57835	-0.047362	-2.5211E-05	-3.9407	-0.0020976	-3.988	-0.0021228	532.2944425763563	95.337	0.94967	95.341	94.835	95.784	0.0041122					59	21	5	0	0	0	0.03519	1	12122	12122		84.916	0	1	474140			51447	5764	35874	35926	56758	56758					0.04956741890782723
MITPIILSN	9	Unmodified	_MITPIILSN_					0	0	0			REV__ENSG00000198763|ENST00000361453|MT-ND2	REV__ENSG00000198763|ENST00000361453|MT-ND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.29107666015625	2	501.288628	1000.5627	-0.5165	-0.00025891	3.5401	0.0017746	3.0236	0.0015157	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.59099	1	10514	10514		53.351	9.2347	1	8326900	+		51448	28469	35875	35927	56759	56759					0.06244455373746405
MITPRWIVPLW	11	Unmodified	_MITPRWIVPLW_					0	0	0		nc|ENSG00000115109|Q9HCM4-4|EPB41L5	nc|ENSG00000115109|Q9HCM4-4|EPB41L5	nc|ENSG00000115109|Q9HCM4-4|EPB41L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2979431152344	3	471.268809	1410.7846	-0.038239	-1.8021E-05	-0.421	-0.0001984	-0.45924	-0.00021642	471.2685973986635	33.161	0.4838	32.93	32.67	33.153	-0.23107					27	11	3	0	0	0	0.024772	1	2317	2317		26.063	2.6855	1	237460			51449	18189	35876	35928	56760	56760					0.09563734789912814
MITPSCQKGY	10	Unmodified	_MITPSCQKGY_					0	0	0		nc|ENSG00000133105|Q8WXD0-2|RXFP2;ENSG00000133105|ENST00000298386|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2666625976562	2	564.264827	1126.5151	-0.28144	-0.0001588	2.8235	0.0015932	2.542	0.0014344	564.2664054423625	73.262	1.0196	72.985	72.626	73.645	-0.2769					70	24	5	0	0	0	0.91678	1	8614	8614		52.937	2.9122	1	3213700			51450	4682	35877	35929	56761	56761					-0.04309566888764493
MITRKVGA	8	Unmodified	_MITRKVGA_					0	0	0		ENSG00000112294|ENST00000357578|ALDH5A1;nc|ENSG00000112294|P51649-2|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.5214538574219	2	438.260205	874.505857	-0.17334	-7.597E-05	-3.1375	-0.001375	-3.3108	-0.001451	438.2586715144033	32.431	0.38437	32.194	31.954	32.339	-0.23666					13	8	2	0	0	0	0.027866	1	2209	2209		4.6817	0	1	112780			51451	3195	35878	35930	56762	56762					0.06358452607878462
MITVPMYF	8	Unmodified	_MITVPMYF_					0	0	0			REV__ENSG00000133019|ENST00000676153|CHRM3	REV__ENSG00000133019|ENST00000676153|CHRM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3029479980469	2	501.245375	1000.4762	-0.25225	-0.00012644	-3.4792	-0.0017439	-3.7315	-0.0018704	501.24369000179547	25.307	0.63283	25.137	24.781	25.413	-0.17078					37	14	4	0	0	0	0.027866	1	1217	1217		46.766	12.594	1	327190	+		51452	23336	35879	35931	56763	56763					-0.024022474524826976
MIVHSGEKP	9	Unmodified	_MIVHSGEKP_					0	0	0		nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-2|ZFP64;chr20:52098587-52105132|494|12.25|0.74|4.04|-|ENST00000371523|ZFP64,ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7951354980469	2	499.260402	996.506251	0.39163	0.00019552	-0.53719	-0.0002682	-0.14557	-7.2676E-05	499.26001258422764	58.199	0.43366	58.199	57.946	58.38	0					20	11	2	0	0	0	0.023417	1	6615	6615		58.782	0.97068	1	370420			51453	18037	35880	35932	56764	56764					0.007858275370722367
MIVHSGEKP	9	Unmodified	_MIVHSGEKP_					0	0	0		nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-2|ZFP64;chr20:52098587-52105132|494|12.25|0.74|4.04|-|ENST00000371523|ZFP64,ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.260402	996.506251	-0.88925	-0.00044397	0.91712	0.00045788	0.027868	1.3913E-05	499.26050776149026	58.398	0.35559	58.211	57.955	58.311	-0.18705	0.062197	0.0011088	NaN	58.782	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335530			51454	18037	35880	35932							0.007858275370722367
MIVHSGEKP	9	Unmodified	_MIVHSGEKP_					0	0	0		nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-2|ZFP64;chr20:52098587-52105132|494|12.25|0.74|4.04|-|ENST00000371523|ZFP64,ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.260402	996.506251	-0.30969	-0.00015461	1.6053	0.00080146	1.2956	0.00064684	499.2602895563146	57.945	0.38899	58.037	57.835	58.224	0.091217	-0.11221	0.001796	NaN	58.782	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403370			51455	18037	35880	35932							0.007858275370722367
MIVPMKAEL	9	2 Oxidation (M)	_M(Oxidation (M))IVPM(Oxidation (M))KAEL_		M(1)IVPM(1)KAEL		M(85)IVPM(85)KAEL	0	0	2			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2794189453125	2	532.279946	1062.54534	-0.2811	-0.00014963	0.15043	8.0073E-05	-0.13067	-6.9552E-05	532.2798142241437	67.84	0.91408	67.84	67.568	68.482	0					59	23	4	0	0	0	0.23085	1	8120	8120		84.916	8.1414	1	2203100	+		51456	26987	35881	35933	56765	56765		800;801			0.016567917764405138
MIVPMKAEL	9	2 Oxidation (M)	_M(Oxidation (M))IVPM(Oxidation (M))KAEL_					0	0	2			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	532.279946	1062.54534	-0.2811	-0.00014963	0.15043	8.0073E-05	-0.13067	-6.9552E-05	532.2798142241437	67.84	0.91408	67.84	67.568	68.482	0	-0.072214	1.4917E-05	NaN	84.916	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2203100	+		51457	26987	35881	35933				800;801			0.016567917764405138
MIVPMKAEL	9	2 Oxidation (M)	_M(Oxidation (M))IVPM(Oxidation (M))KAEL_					0	0	2			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.279946	1062.54534	-0.19952	-0.0001062	0.078272	4.1663E-05	-0.12125	-6.4537E-05	532.2797910993619	68.217	0.77803	67.924	67.588	68.366	-0.29266	0.011862	-6.1903E-05	NaN	84.916	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1989300	+		51458	26987	35881	35933				800;801			0.016567917764405138
MIVPMKAEL	9	2 Oxidation (M)	_M(Oxidation (M))IVPM(Oxidation (M))KAEL_					0	0	2			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.279946	1062.54534	0.023462	1.2489E-05	0.18118	9.6439E-05	0.20464	0.00010893	532.2797843565123	67.954	1.1376	67.973	67.549	68.686	0.018913	0.060351	4.7649E-05	NaN	84.916	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1880300	+		51459	26987	35881	35933				800;801			0.016567917764405138
MIVQHRDV	8	Unmodified	_MIVQHRDV_					0	0	0			REV__ENSG00000123901|ENST00000243673|GPR83	REV__ENSG00000123901|ENST00000243673|GPR83	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7899169921875	2	499.266019	996.517485	0.33497	0.00016724	-2.1305	-0.0010637	-1.7956	-0.00089646	499.2638224951781	69.862	0.49015	69.862	69.464	69.954	0					22	11	3	0	0	0	0.027866	1	8436	8436		42.396	8.2236	1	157130	+		51460	22718	35882	35934	56766	56766					0.019086496312070267
MIVQHRDV	8	Unmodified	_MIVQHRDV_					0	0	0			REV__ENSG00000123901|ENST00000243673|GPR83	REV__ENSG00000123901|ENST00000243673|GPR83	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.266019	996.517485	-0.20831	-0.000104	-4.1717	-0.0020828	-4.38	-0.0021868	499.26378572406907	69.893	0.36597	69.906	69.627	69.993	0.012421	0.044455	0.00076577	NaN	34.173	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158400	+		51461	22718	35882	35934							0.019086496312070267
MIVYLISALV	10	Unmodified	_MIVYLISALV_					0	0	0		MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant;nc|ENSG00000152939|Q8N4S9-3|MARVELD2;ENSG00000152939|ENST00000325631|MARVELD2;nc|ENSG00000152939|Q8N4S9-2|MARVELD2	MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.3351440429688	2	561.335578	1120.6566	0.071375	4.0065E-05	-0.9623	-0.00054017	-0.89093	-0.00050011	561.3346552747912	104.84	0.43481	104.72	104.51	104.94	-0.12561					23	13	2	0	0	0	1.1259	1	13044	13044		24.203	1.1603	1	134730			51462	6308	35883	35935	56767	56767					0.10110174475994427
MIWPLLVE	8	Unmodified	_MIWPLLVE_					0	0	0			REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.75775146484375	2	500.780439	999.546325	-0.44861	-0.00022465	-2.692	-0.0013481	-3.1407	-0.0015728	500.77844417153466	69.233	1.8438	69.01	68.283	70.127	-0.22246					94	44	4	0	0	0	0.027866	1	8144	8144		65.897	17.982	1	425060	+		51463	27083	35884	35936	56768	56768					0.04653374207646266
MIWVSNLK	8	Unmodified	_MIWVSNLK_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7377624511719	2	495.775688	989.536823	1.2405	0.000615	3.1264	0.00155	4.3669	0.002165	495.7773297954873	36.365	0.55791	36.167	35.776	36.334	-0.19829					20	14	2	0	0	0	0.027866	1	2848	2848		33.516	16.151	1	171870	+		51464	20737	35885	35937	56769	56769					0.04163605922099123
MIYCCTGPA	9	Unmodified	_MIYCCTGPA_					0	0	0			REV__ENSG00000168484|ENST00000679463|SFTPC	REV__ENSG00000168484|ENST00000679463|SFTPC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.73541259765625	2	479.695192	957.375831	-0.3498	-0.0001678	-0.33142	-0.00015898	-0.68122	-0.00032678	479.6948817722825	59.662	0.40294	59.748	59.54	59.943	0.085686					15	10	2	0	0	0	0.024386	1	6717	6717		52.299	9.8247	1	72666	+		51465	26263	35886	35938	56770	56770					-0.10456227777785898
MIYPGPQNVG	10	Unmodified	_MIYPGPQNVG_					0	0	0			REV__ENSG00000129636|ENST00000320640|ITFG1	REV__ENSG00000129636|ENST00000320640|ITFG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2958984375	2	538.265684	1074.51682	-1.0875	-0.00058534	-2.7311	-0.0014701	-3.8186	-0.0020554	538.7662043075303	37.621	0.36421	37.654	37.525	37.889	0.032269					14	9	2	0	0	0	0.03519	1	3025	3025		18.324	3.4595	1	124800	+		51466	23054	35887	35939	56771	56771					-0.01746189808500276
MIYRRLGR	8	Unmodified	_MIYRRLGR_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7899169921875	2	532.810928	1063.6073	-0.53083	-0.00028283	-2.9198	-0.0015557	-3.4506	-0.0018385	532.8095006103666	64.294	0.65974	64.032	63.719	64.379	-0.2626					22	17	2	0	0	0	0.027866	1	7542	7542		25.45	0	1	592020	+		51467	24332	35888	35940	56772	56772					0.07804324030439602
MKADIESLV	9	Unmodified	_MKADIESLV_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2685241699219	2	503.267893	1004.52123	0.6203	0.00031218	-0.93378	-0.00046994	-0.31348	-0.00015776	503.2671101528774	71.287	1.5544	71.287	70.241	71.795	0					102	38	3	0	0	0	0.42604	1	8549	8549		64.207	7.4862	1	1599600			51468	5759	35889	35941	56773	56773					0.01915274614395912
MKAIMEATY	9	Unmodified	_MKAIMEATY_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.258056640625	2	529.256471	1056.49839	2.8398	0.001503	0.78993	0.00041807	3.6297	0.001921	529.2567023153539	16.964	0.34401	16.964	16.807	17.151	0					19	8	3	0	0	0	0.92825	1	106	106		30.504	5.0535	1	60575	+		51469	21310	35890	35942	56774	56774					-0.027600677747159352
MKCIALGTLS	10	Unmodified	_MKCIALGTLS_					0	0	0			REV__ENST00000340703.5_1_4:9694764-9704575:+|nuORF	REV__ENST00000340703.5_1_4:9694764-9704575:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7802124023438	2	518.780113	1035.54567	0.38986	0.00020225	-2.5568	-0.0013264	-2.167	-0.0011242	518.7788309208048	85.814	0.98257	85.814	85.708	86.69	0					23	14	2	0	0	0	0.98754	1	10775	10775		47.657	1.6851	1	1463800	+		51470	30622	35891	35943	56775	56775					0.029322114962951673
MKCRLYVS	8	Carbamidomethyl (C)	_MKC(Carbamidomethyl (C))RLYVS_	MKC(1)RLYVS		MKC(120)RLYVS		0	1	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.7669067382812	2	528.77008	1055.52561	0.28901	0.00015282	0.75307	0.0003982	1.0421	0.00055102	528.7712014830078	67.854	1.0282	67.873	67.508	68.536	0.018913					96	26	5	0	0	0	0.2917	1	8031	8031		115.46	22.264	1	4470300	+		51471	27992	35892	35944	56776	56776	365				6.460556301135512E-05
MKDLIVFF	8	Unmodified	_MKDLIVFF_					0	0	0			REV__ENST00000602710.5_1_2:181845944-181846163:+|nuORF	REV__ENST00000602710.5_1_2:181845944-181846163:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7790832519531	2	506.780439	1011.54633	0.11708	5.9332E-05	-3.6103	-0.0018296	-3.4932	-0.0017703	506.77852713670825	98.64	1.2614	98.651	98.356	99.617	0.010231					60	28	3	0	0	0	0.89627	1	12577	12577		51.335	1.8939	1	358210	+		51472	35885	35893	35945	56777	56777					0.04101374207641584
MKDSEKHIE	9	Unmodified	_MKDSEKHIE_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.7705078125	2	558.771331	1115.52811	0.55279	0.00030888	-0.56218	-0.00031413	-0.0093947	-5.2495E-06	558.7708447857885	20.896	0.63933	20.965	20.71	21.349	0.068901					24	12	3	0	0	0	0.247	1	547	547		82.75	9.8712	1	147420			51473	4473	35894	35946	56778	56778					-0.025034125050069633
MKDSEKHIE	9	Unmodified	_MKDSEKHIE_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.771331	1115.52811	-1.0279	-0.00057437	0.90973	0.00050833	-0.11819	-6.6041E-05	558.7716424186648	20.832	0.6335	20.832	20.562	21.195	0	-0.12508	0.00086891	NaN	82.75	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208200			51474	4473	35894	35946							-0.025034125050069633
MKDSEKHIE	9	Unmodified	_MKDSEKHIE_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.771331	1115.52811	0.14684	8.2052E-05	-0.55469	-0.00030995	-0.40785	-0.00022789	558.7709270983936	21.119	0.57906	20.942	20.63	21.209	-0.17721	-0.015078	-0.00076765	NaN	82.75	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96019			51475	4473	35894	35946							-0.025034125050069633
MKDSEKHIE	9	Unmodified	_MKDSEKHIE_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.771331	1115.52811	0.20835	0.00011642	-0.6372	-0.00035605	-0.42885	-0.00023963	558.7709219977793	21.244	0.58759	21.054	20.784	21.372	-0.19072	0.096673	-0.00085986	NaN	82.75	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86151			51476	4473	35894	35946							-0.025034125050069633
MKDSEKHIE	9	Unmodified	_MKDSEKHIE_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733207-65733809:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.771331	1115.52811	-1.4767	-0.00082514	1.0951	0.00061192	-0.38159	-0.00021322	558.7718690527621	21.257	0.49297	21.044	20.773	21.266	-0.2128	0.087508	0.0010761	NaN	82.75	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60280			51477	4473	35894	35946							-0.025034125050069633
MKDTLTNIN	9	Unmodified	_MKDTLTNIN_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2886962890625	2	525.268424	1048.5223	0.11109	5.8352E-05	3.7428	0.001966	3.8539	0.0020243	525.2705714903052	77.158	0.33928	77.172	76.978	77.317	0.013496					13	7	2	0	0	0	0.023291	1	9438	9438		90.601	28.493	1	156820			51478	5192	35895	35947	56779	56779					-2.5110166916419985E-05
MKEAKKVVI	9	Unmodified	_MKEAKKVVI_					0	0	0		ENSG00000204165|ENST00000374251|CXorf65	ENSG00000204165|ENST00000374251|CXorf65	ENSG00000204165|ENST00000374251|CXorf65	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3236083984375	2	523.325545	1044.63654	-0.34883	-0.00018255	-3.8697	-0.0020251	-4.2185	-0.0022076	523.3234466656129	67.457	1.4987	67.169	66.872	68.371	-0.28834					98	37	5	0	0	0	0.34489	1	8058	8058		69.628	0.8408	1	11496000			51479	10307	35896	35948	56780	56780					0.11600423536060589
MKEAQEKW	8	Oxidation (M)	_M(Oxidation (M))KEAQEKW_		M(1)KEAQEKW		M(100)KEAQEKW	0	0	1			REV__nc|ENSG00000100592|Q9Y4D1-3|DAAM1	REV__nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2548217773438	2	533.255317	1064.49608	-0.67201	-0.00035835	0.35892	0.0001914	-0.31309	-0.00016696	533.2555964440941	40.859	3.0577	40.631	39.259	42.316	-0.2278					145	80	2	0	0	0	0.35998	1	3546	3546		102.77	9.5779	1	2009700	+		51480	21136	35897	35949	56781	56781		648			-0.033587801881594714
MKEEEKTQE	9	Unmodified	_MKEEEKTQE_					0	0	0			REV__RNF8|p.K379del|1|0.11|ENSG00000112130|chr6:37376930-37376932|AGA/-|inframe_deletion	REV__RNF8|p.K379del|1|0.11|ENSG00000112130|chr6:37376930-37376932|AGA/-|inframe_deletion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	576.3087768554688	2	576.266078	1150.5176	0.28652	0.00016511	-2.5973	-0.0014967	-2.3108	-0.0013316	576.2643129827514	74.395	0.507	74.136	73.944	74.451	-0.25887					17	11	2	0	0	0	0.024337	1	9109	9109		58.23	22.612	1	160530	+		51481	37447	35898	35950	56782	56782					-0.05163439950092652
MKEEEKTQE	9	Unmodified	_MKEEEKTQE_					0	0	0			REV__RNF8|p.K379del|1|0.11|ENSG00000112130|chr6:37376930-37376932|AGA/-|inframe_deletion	REV__RNF8|p.K379del|1|0.11|ENSG00000112130|chr6:37376930-37376932|AGA/-|inframe_deletion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.266078	1150.5176	0.083824	4.8305E-05	-1.8964	-0.0010928	-1.8126	-0.0010445	576.2650936963782	74.42	0.30675	74.144	74.001	74.308	-0.27573	0.011258	-0.0002678	NaN	67.494	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87648	+		51482	37447	35898	35950							-0.05163439950092652
MKEFAEVKG	9	Unmodified	_MKEFAEVKG_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8207397460938	2	519.76806	1037.52157	-0.91545	-0.00047582	2.307	0.0011991	1.3915	0.00072326	519.7698686567659	80.727	0.20224	80.727	80.544	80.746	0					11	4	3	0	0	0	0.024477	1	10016	10016		35.618	0	1	259730	+		51483	27757	35899	35951	56783	56783					0.004306943342726299
MKERQGLF	8	Unmodified	_MKERQGLF_					0	0	0		nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000189077|ENST00000493111|TMEM120A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7668151855469	2	504.768394	1007.52224	-0.19713	-9.9504E-05	-3.8476	-0.0019422	-4.0448	-0.0020417	504.76647041137096	63.593	2.0499	63.4	62.738	64.788	-0.19243					167	51	5	0	0	0	0.44658	2	7174	7174;7234		90.777	8.5361	1	34087000			51484	18611;9785	35900	35952	56784;56785	56784					0.018775337739839415
MKEVMWSPLV	10	Unmodified	_MKEVMWSPLV_					0	0	0			REV__ENSG00000101457|ENST00000372622|DNTTIP1	REV__ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	610.3159790039062	2	610.31432	1218.61409	0.046585	2.8432E-05	1.613	0.00098443	1.6596	0.0010129	610.315126923622	61.508	0.96679	61.282	61.082	62.049	-0.22663					49	25	3	0	0	0	0.48123	1	7112	7112		90.37	5.209	1	1986100	+		51485	21236	35901	35953	56786	56786					0.013524560761425164
MKFCCTYPE	9	Unmodified	_MKFCCTYPE_					0	0	0		ENST00000466893.5_1_3:62262350-62302793:-|nuORF	ENST00000466893.5_1_3:62262350-62302793:-|nuORF	ENST00000466893.5_1_3:62262350-62302793:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.2794189453125	2	561.226856	1120.43916	-0.75532	-0.00042391	1.8198	0.0010213	1.0645	0.00059743	561.2296769944809	84.964	0.33073	84.906	84.732	85.063	-0.05761					10	7	2	0	0	0	0.024495	1	10593	10593		26.693	6.2111	1	56048			51486	14823	35902	35954	56787	56787					-0.1162428706056744
MKFCCTYPE	9	Unmodified	_MKFCCTYPE_					0	0	0		ENST00000466893.5_1_3:62262350-62302793:-|nuORF	ENST00000466893.5_1_3:62262350-62302793:-|nuORF	ENST00000466893.5_1_3:62262350-62302793:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.2792358398438	2	561.226856	1120.43916	-0.64213	-0.00036038	1.3483	0.00075671	0.70618	0.00039633	561.2281068856554	84.907	0.45493	84.933	84.704	85.159	0.025536					16	10	2	0	0	0	0.02435	1	10530	10530		34.173	5.023	1	91014			51487	14823	35902	35954	56788	56788					-0.1162428706056744
MKFISLLANN	10	Oxidation (M)	_M(Oxidation (M))KFISLLANN_		M(1)KFISLLANN		M(44)KFISLLANN	0	0	1			REV__nc|ENSG00000166181|Q9BZZ5-6|API5	REV__nc|ENSG00000166181|Q9BZZ5-6|API5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.8125610351562	2	583.815541	1165.61653	-0.94709	-0.00055293	4.3978	0.0025675	3.4507	0.0020146	583.8177673019171	17.483	0.49998	17.276	17.014	17.514	-0.20669					17	9	3	0	0	0	1.0122	1	187	187		44.377	8.7589	1	52949	+		51488	25987	35903	35955	56789	56789		770			0.04034627805458513
MKFVLIKVL	9	Unmodified	_MKFVLIKVL_					0	0	0			REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF	REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8346557617188	2	545.856481	1089.69841	-0.84629	-0.00046195	-1.2167	-0.00066413	-2.063	-0.0011261	545.85599415039	48.978	0.21695	48.698	48.501	48.718	-0.27977					10	5	2	0	0	0	0.024541	1	4854	4854		12.959	5.7658	1	261090	+		51489	33100	35904	35956	56790	56790					0.15714774955199573
MKGALALLSV	10	Unmodified	_MKGALALLSV_					0	0	0			REV__nc|ENSG00000064666|Q99439-2|CNN2	REV__nc|ENSG00000064666|Q99439-2|CNN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2860412597656	2	501.804445	1001.59434	0.042717	2.1435E-05	-0.24333	-0.0001221	-0.20061	-0.00010067	501.8041300168166	63.398	0.39459	63.17	62.933	63.328	-0.22773					16	9	3	0	0	0	0.03519	1	7139	7139		26.693	0	1	326340	+		51490	36462	35905	35957	56791	56791					0.09360448127677046
MKGLVGYARL	10	Unmodified	_MKGLVGYARL_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.7821044921875	2	554.320794	1106.62703	-0.52723	-0.00029226	2.8484	0.001579	2.3212	0.0012867	554.3223852087106	81.174	3.5239	81.044	79.904	83.428	-0.13075					172	84	3	0	0	0	0.03519	1	10321	10321		62.107	8.756	1	259020			51491	1075	35906	35958	56792	56792					0.07798655250530828
MKGQLNLKT	9	Unmodified	_MKGQLNLKT_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-5|SYT14	REV__nc|ENSG00000143469|Q8NB59-5|SYT14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8146362304688	2	516.797152	1031.57975	0.12033	6.2188E-05	-2.6005	-0.0013439	-2.4802	-0.0012818	516.7955359448541	60.032	0.55106	60.032	59.779	60.33	0					23	14	2	0	0	0	0.023837	1	6917	6917		64.207	0.901	1	543000	+		51492	36733	35907	35959	56793	56793					0.06522375979534445
MKGWWPLF	8	Unmodified	_MKGWWPLF_					0	0	0			REV__ENST00000427025.6_2_6:138893369-138893522:-|nuORF	REV__ENST00000427025.6_2_6:138893369-138893522:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.3388671875	2	532.772948	1063.53134	0.67579	0.00036004	1.7163	0.00091442	2.3921	0.0012745	532.7735699833675	97.827	0.477	97.703	97.372	97.849	-0.12369					24	10	3	0	0	0	0.027866	1	12128	12128		35.201	0	1	166440	+		51493	32280	35908	35960	56794	56794					0.0021192713029449806
MKHRWKSF	8	Unmodified	_MKHRWKSF_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.2988891601562	2	560.297653	1118.58075	-0.74243	-0.00041598	2.6075	0.001461	1.8651	0.001045	560.2989887192338	28.414	2.1587	28.41	26.63	28.789	-0.0042019					138	54	4	0	0	0	0.87148	1	1619	1619		53.351	3.8154	1	1155400			51494	1827	35909	35961	56795	56795					0.026206351391010685
MKHYETKLHS	10	Unmodified	_MKHYETKLHS_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.7585754394531	3	425.216774	1272.62849	0.11673	4.9635E-05	3.7464	0.001593	3.8631	0.0016426	425.21841672364803	31.684	0.40964	31.499	31.283	31.693	-0.18503					17	9	2	0	0	0	0.03519	1	2113	2113		10.587	0	1	75911	+		51495	21154	35910	35962	56796	56796					0.0030824454863704887
MKIGGVLVN	9	Unmodified	_MKIGGVLVN_					0	0	0		nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS	nc|ENSG00000159267|P50747|HLCS	nc|ENSG00000159267|P50747|HLCS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.77703857421875	2	465.775688	929.536823	0.37671	0.00017546	3.7484	0.0017459	4.1251	0.0019214	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.94809	1	9988	9988		29.15	3.6994	1	1283800			51496	6736	35911	35963	56797	56797					0.06923605922111165
MKIKDNIN	8	Unmodified	_MKIKDNIN_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.26873779296875	2	488.268227	974.521901	0.072376	3.5339E-05	-0.065707	-3.2083E-05	0.0066692	3.2563E-06	488.2680404588551	46.582	1.0207	46.582	46.09	47.111	0					70	27	4	0	0	0	0.38451	1	4637	4637		99.375	5.3685	1	3063000			51497	3786	35912	35964	56798	56798					0.033621140541072236
MKIKDNIN	8	Unmodified	_MKIKDNIN_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2683410644531	2	488.268227	974.521901	-0.46625	-0.00022766	0.55009	0.00026859	0.083835	4.0934E-05	488.2683332135386	46.547	1.0028	46.599	46.096	47.099	0.051395					62	27	3	0	0	0	0.30053	1	4562	4562		111.65	5.2331	1	3016100			51498	3786	35912	35964	56799	56799					0.033621140541072236
MKIKHILLLG	10	Unmodified	_MKIKHILLLG_					0	0	0		ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2992553710938	2	583.378112	1164.74167	-1.0303	-0.00060106	-1.2923	-0.00075389	-2.3226	-0.0013549	583.3771186533149	44.127	0.8872	44.022	43.78	44.667	-0.10468					59	23	3	0	0	0	0.03519	1	4078	4078		23.042	8.1776	1	571990			51499	13575	35913	35965	56800	56800					0.16588964732477507
MKIKHILLLG	10	Unmodified	_MKIKHILLLG_					0	0	0		ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	583.378112	1164.74167	-2.2097	-0.0012891	0.021541	1.2567E-05	-2.1882	-0.0012765	583.3779318908178	44.006	1.1337	44.006	43.836	44.97	0	-0.050563	0.00081161	NaN	23.042	86	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1256600			51500	13575	35913	35965							0.16588964732477507
MKIKHILLLG	10	Unmodified	_MKIKHILLLG_					0	0	0		ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	583.378112	1164.74167	-2.0517	-0.0011969	-0.0068226	-3.9802E-06	-2.0585	-0.0012009	583.3778971233132	44.176	1.2357	44.031	43.883	45.119	-0.14471	-0.025203	0.00077852	NaN	23.042	89	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1571600			51501	13575	35913	35965							0.16588964732477507
MKIKHILLLG	10	Unmodified	_MKIKHILLLG_					0	0	0		ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	ENST00000397033.6_1_2:182386922-182386958:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	583.378112	1164.74167	0.022448	1.3095E-05	-2.0099	-0.0011725	-1.9874	-0.0011594	583.3767170410931	44.034	1.1081	44.071	43.923	45.031	0.0369	0.014955	-0.0015586	NaN	23.042	94	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1507500			51502	13575	35913	35965							0.16588964732477507
MKINALVVLS	10	Unmodified	_MKINALVVLS_					0	0	0			REV__ENST00000533597.1_1_11:108016907-108018114:+|nuORF	REV__ENST00000533597.1_1_11:108016907-108018114:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3167724609375	2	544.330827	1086.6471	-1.8515	-0.0010078	-1.8026	-0.00098122	-3.6541	-0.001989	544.3296976267034	91.025	0.49541	91.025	90.719	91.215	0					14	11	2	0	0	0	0.03519	1	11477	11477		44.377	5.1244	1	102370	+		51503	34611	35914	35966	56801	56801					0.10724406190502123
MKIRFLSCQ	9	Carbamidomethyl (C)	_MKIRFLSC(Carbamidomethyl (C))Q_	MKIRFLSC(1)Q		MKIRFLSC(85)Q		0	1	0		ENSG00000124602|ENST00000244565|UNC5CL	ENSG00000124602|ENST00000244565|UNC5CL	ENSG00000124602|ENST00000244565|UNC5CL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	591.8116455078125	2	591.809736	1181.60492	-1.6372	-0.00096892	4.397	0.0026022	2.7598	0.0016333	591.8122928433457	96.507	0.95268	96.507	96.194	97.147	0					65	21	4	0	0	0	0.23085	1	12336	12336		84.916	8.1414	1	938420			51504	4062	35915	35967	56802	56802	49				0.02138107510450027
MKKAFRVV	8	Unmodified	_MKKAFRVV_					0	0	0			REV__ENST00000521086.6_1_8:54915649-54934685:-|nuORF	REV__ENST00000521086.6_1_8:54915649-54934685:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.29315185546875	2	489.799497	977.584442	-0.43511	-0.00021312	-3.5731	-0.0017501	-4.0082	-0.0019632	489.794659557829	67.065	1.0843	66.783	66.555	67.639	-0.28148					60	26	4	0	0	0	0.027866	1	7967	7967		47.916	0	1	1259300	+		51505	27964	35916	35968	56803	56803					0.09475304912962201
MKKDKLHRRA	10	Unmodified	_MKKDKLHRRA_					0	0	0		VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant;nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	VAV1|p.K732Rfs*38|1|0.24|ENSG00000141968|chr19:6850734-6850735|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8831787109375	2	641.879873	1281.74519	0.76256	0.00048947	3.1943	0.0020503	3.9568	0.0025398	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.1088	1	12031	12031		31.53	1.2121	1	3421300			51506	5531	35917	35969	56804	56804					0.11559027559042079
MKKELVAGV	9	Unmodified	_MKKELVAGV_					0	0	0			REV__nc|ENSG00000158882|Q969M1-2|TOMM40L	REV__nc|ENSG00000158882|Q969M1-2|TOMM40L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7906188964844	2	487.788795	973.563038	0.33726	0.00016451	3.3292	0.001624	3.6665	0.0017885	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.72875	1	9996	9996		44.117	1.7207	1	1999500	+		51507	25225	35918	35970	56805	56805					0.0751987509358969
MKKERRKN	8	Unmodified	_MKKERRKN_					0	0	0		ENST00000266732.8_2_12:98925583-98926627:+|nuORF	ENST00000266732.8_2_12:98925583-98926627:+|nuORF	ENST00000266732.8_2_12:98925583-98926627:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	545.3170776367188	2	545.319117	1088.62368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.723	1	92.723	92.223	93.223	0								0	0	0	0.73058	1	11766	11766		39.253	2.0937	1				51508	11612	35919	35971	56806	56806					0.08291405196541746
MKKFWPNP	8	Unmodified	_MKKFWPNP_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3075561523438	2	524.275855	1046.53716	-0.11043	-5.7898E-05	-3.4129	-0.0017893	-3.5233	-0.0018472	524.2739554076043	71.433	0.76413	71.433	71.105	71.869	0					27	19	2	0	0	0	0.027866	1	8654	8654		55.504	2.1528	1	523760			51509	3369	35920	35972	56807	56807					0.01575025641955108
MKKHVVVEQL	10	Oxidation (M)	_M(Oxidation (M))KKHVVVEQL_		M(1)KKHVVVEQL		M(69)KKHVVVEQL	0	0	1			REV__ENST00000465020.5_1_3:38519799-38524820:+|nuORF	REV__ENST00000465020.5_1_3:38519799-38524820:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5704345703125	3	409.569036	1225.68528	0.57597	0.0002359	2.4055	0.00098522	2.9815	0.0012211	409.5700316746526	32.044	1.1631	32.107	31.799	32.962	0.062885					92	29	5	0	0	0	0.67616	1	2147	2147		68.846	10.616	1	5773500	+		51510	22139	35921	35973	56808	56808		660			0.08146292105175235
MKKHVVVEQL	10	Oxidation (M)	_M(Oxidation (M))KKHVVVEQL_					0	0	1			REV__ENST00000465020.5_1_3:38519799-38524820:+|nuORF	REV__ENST00000465020.5_1_3:38519799-38524820:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	409.569036	1225.68528	0.76481	0.00031324	6.1365	0.0025133	6.9013	0.0028266	409.5712383431398	32.431	0.13111	32.238	32.162	32.293	-0.19261	-0.013436	0.0043868	NaN	68.846	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16963	+		51511	22139	35921	35973				660			0.08146292105175235
MKKITQLW	8	Unmodified	_MKKITQLW_					0	0	0		ENST00000371437.4_1_X:119010513-119010579:+|nuORF	ENST00000371437.4_1_X:119010513-119010579:+|nuORF	ENST00000371437.4_1_X:119010513-119010579:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.3046264648438	2	524.304613	1046.59467	0.14593	7.651E-05	4.472	0.0023447	4.6179	0.0024212	524.3069452935372	71.441	0.52877	71.452	71.05	71.579	0.010735					25	13	2	0	0	0	0.56592	1	8595	8595		79.451	4.4077	1	15074000			51512	12995	35922	35974	56809	56809					0.07323867847549081
MKKIVDQN	8	Unmodified	_MKKIVDQN_					0	0	0		nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE	nc|ENSG00000109472|P16870-2|CPE	nc|ENSG00000109472|P16870-2|CPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2687072753906	2	488.268227	974.521901	-0.60402	-0.00029492	0.6945	0.0003391	0.090484	4.418E-05	488.2684021829586	46.69	1.1729	46.537	45.988	47.161	-0.15301					83	31	4	0	0	0	0.50239	2	4612	4612;4624		85.359	5.9085	1	2928900			51513	2978	35923	35975	56810;56811	56810					0.03362114054118592
MKKIVKDNSS	10	Unmodified	_MKKIVKDNSS_					0	0	0			REV__ENSG00000108602|ENST00000225740|ALDH3A1	REV__ENSG00000108602|ENST00000225740|ALDH3A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8433837890625	2	575.318448	1148.62234	0.10141	5.8341E-05	-1.9074	-0.0010974	-1.806	-0.001039	575.8198802789889	90.837	0.16721	90.697	90.577	90.744	-0.13942					6	3	2	0	0	0	0.03519	1	11118	11118		31.53	0	1	32509	+		51514	21752	35924	35976	56812	56812					0.053977263171191225
MKKLASTLLD	10	Unmodified	_MKKLASTLLD_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3236083984375	2	560.325742	1118.63693	-0.73892	-0.00041403	-2.0917	-0.001172	-2.8306	-0.0015861	560.324413654617	83.299	1.414	83.299	83.008	84.422	0					91	32	4	0	0	0	0.94316	1	10410	10410		51.193	1.6567	1	820830			51515	8927	35926	35977	56813	56813					0.08235798465261723
MKKLIIDGT	9	Unmodified	_MKKLIIDGT_					0	0	0		ENSG00000234284|ENST00000444149|ZNF879	ENSG00000234284|ENST00000444149|ZNF879	ENSG00000234284|ENST00000444149|ZNF879	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8039245605469	2	509.801903	1017.58925	0.50937	0.00025968	3.0016	0.0015302	3.5109	0.0017899	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.94809	1	10715	10715		29.15	1.2673	1	2754700			51516	10718	35927	35978	56814	56814					0.08116144265090952
MKKLLPQLV	9	Unmodified	_MKKLLPQLV_					0	0	0		ENST00000537905.5_1_11:71735188-71747007:-|nuORF	ENST00000537905.5_1_11:71735188-71747007:-|nuORF	ENST00000537905.5_1_11:71735188-71747007:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.8057250976562	2	535.343738	1068.67292	-1.2103	-0.00064794	1.2607	0.00067489	0.050336	2.6947E-05	535.3442014314757	80.118	0.54906	80.14	80.021	80.57	0.021446					18	12	2	0	0	0	0.024457	1	9926	9926		37.159	0	1	64643			51517	16380	35928	35979	56815	56815					0.141333004327862
MKKLSLLN	8	Unmodified	_MKKLSLLN_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2852478027344	2	473.791338	945.568123	-0.44368	-0.00021021	-1.6179	-0.00076655	-2.0616	-0.00097676	473.79047817214877	83.514	0.34319	83.541	83.384	83.727	0.026558					11	7	2	0	0	0	0.027866	1	10348	10348		38.806	12.01	1	336360			51518	3254	35929	35980	56816	56816					0.0931617895622594
MKKLSLLN	8	Unmodified	_MKKLSLLN_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.791338	945.568123	-0.043234	-2.0484E-05	-1.2272	-0.00058141	-1.2704	-0.0006019	473.79072920612634	83.584	0.69315	83.584	83.435	84.128	0	0.01984	-5.8312E-06	NaN	30.504	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282380			51519	3254	35929	35980							0.0931617895622594
MKKLSLLN	8	Unmodified	_MKKLSLLN_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.791338	945.568123	0.016794	7.9569E-06	-1.1715	-0.00055505	-1.1547	-0.00054709	473.79077406343066	83.658	0.42941	83.567	83.427	83.856	-0.090454	0.003411	4.6905E-05	NaN	30.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260090			51520	3254	35929	35980							0.0931617895622594
MKKMLLPE	8	Oxidation (M)	_MKKM(Oxidation (M))LLPE_		MKKM(1)LLPE		M(-55)KKM(55)LLPE	0	0	1		JAK1|p.Q207L|1|0.28|ENSG00000162434|chr1:64869338-64869338|T/A|missense_variant	JAK1|p.Q207L|1|0.28|ENSG00000162434|chr1:64869338-64869338|T/A|missense_variant	JAK1|p.Q207L|1|0.28|ENSG00000162434|chr1:64869338-64869338|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2478942871094	2	503.277206	1004.53986	0.13199	6.6429E-05	-2.0079	-0.0010105	-1.8759	-0.00094409	503.2764884135417	61.414	0.86921	61.485	60.91	61.779	0.071125					32	22	2	0	0	0	0.027866	1	6972	6972		99.375	60.122	2	280990			51521	17781	35930	35981	56817	56817		561			0.0377711298461918
MKKRGFKM	8	Unmodified	_MKKRGFKM_					0	0	0		ENSG00000074771|ENST00000159060|NOX3	ENSG00000074771|ENST00000159060|NOX3	ENSG00000074771|ENST00000159060|NOX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.7501220703125	2	513.290982	1024.56741	-0.52697	-0.00027049	-1.4706	-0.00075485	-1.9976	-0.0010253	513.290206035003	41.524	0.6586	41.294	40.886	41.544	-0.2303					25	16	2	0	0	0	0.027866	1	3646	3646		26.796	0	1	304280			51522	1537	35931	35982	56818	56818					0.05611061035506282
MKKTYPPW	8	Unmodified	_MKKTYPPW_					0	0	0			REV__ENST00000568903.5_1_16:24803023-24807335:+|nuORF	REV__ENST00000568903.5_1_16:24803023-24807335:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.8271484375	2	525.775688	1049.53682	0.12296	6.4648E-05	1.7753	0.0009334	1.8982	0.00099805	525.7765002792042	97.951	2.2492	97.962	96.796	99.046	0.010231					129	51	4	0	0	0	0.027866	1	12490	12490		50.025	15.852	1	2509500	+		51523	20889	35932	35983	56819	56819					0.014036059221098185
MKLADRRE	8	Unmodified	_MKLADRRE_					0	0	0			REV__ENSG00000122299|ENST00000355758|ZC3H7A	REV__ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.7744140625	2	509.776751	1017.53895	-0.94689	-0.0004827	-3.4742	-0.0017711	-4.4211	-0.0022538	509.77501619806185	44.626	1.116	44.382	44.115	45.231	-0.2444					67	29	4	0	0	0	0.25873	1	4152	4152		129.68	5.0884	1	8761000	+		51524	22636	35933	35984	56820	56820					0.030880346599246877
MKLCKSHTP	9	Unmodified	_MKLCKSHTP_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3035278320312	2	522.77008	1043.52561	0.062417	3.263E-05	-3.2799	-0.0017146	-3.2175	-0.001682	522.7684959456328	85.685	0.85531	85.49	85.172	86.027	-0.19508					28	19	2	0	0	0	0.024397	1	10413	10413		31.53	0	1	263960	+		51525	25882	35934	35985	56821	56821					0.005584605563171863
MKLCLEEEL	9	Unmodified	_MKLCLEEEL_					0	0	0		KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant;KBTBD4|p.A367Lfs*17|1|0.06|ENSG00000123444|chr11:47573388-47573388|C/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.2769775390625	2	554.27486	1106.53517	0.11722	6.4974E-05	-0.27034	-0.00014984	-0.15311	-8.4867E-05	554.2743167913636	97.618	1.1211	97.627	97.192	98.313	0.0089111					58	25	3	0	0	0	0.34489	1	12451	12451		69.628	7.5202	1	171350			51526	3978	35935	35986	56822	56822					-0.013838159488159363
MKLCLEEEL	9	Unmodified	_MKLCLEEEL_					0	0	0		KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant;KBTBD4|p.A367Lfs*17|1|0.06|ENSG00000123444|chr11:47573388-47573388|C/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.2745971679688	2	554.27486	1106.53517	0.72968	0.00040444	-0.86504	-0.00047947	-0.13536	-7.5026E-05	554.2740796710519	97.925	1.0696	97.923	97.322	98.392	-0.0020752					60	24	3	0	0	0	0.50848	2	12404	12404;12415		58.782	7.4465	1	226120			51527	3978	35935	35986	56823;56824	56823					-0.013838159488159363
MKLCYGPCTS	10	Unmodified	_MKLCYGPCTS_					0	0	0		ENST00000428931.5_1_1:154242855-154243155:+|nuORF	ENST00000428931.5_1_1:154242855-154243155:+|nuORF	ENST00000428931.5_1_1:154242855-154243155:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.7728881835938	2	551.740131	1101.46571	-0.62949	-0.00034731	-2.5645	-0.0014149	-3.194	-0.0017623	551.7386988522006	60.486	0.68007	60.232	59.904	60.584	-0.25373					25	16	2	0	0	0	0.03519	1	6728	6728		32.812	10.853	1	114070			51528	14135	35936	35987	56825	56825					-0.08096598169208846
MKLEEKEW	8	Unmodified	_MKLEEKEW_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.772216796875	2	546.773342	1091.53213	0.13692	7.4865E-05	-3.4705	-0.0018976	-3.3335	-0.0018227	546.771275974475	81.095	1.4104	80.888	80.548	81.958	-0.20632					74	33	4	0	0	0	0.38989	2	9747	9747;9761		98.629	4.9155	1	1744800			51529	7695	35937	35988	56826;56827	56826					-0.009973230113018872
MKLEEKEW	8	Unmodified	_MKLEEKEW_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.77197265625	2	546.773342	1091.53213	-0.63558	-0.00034752	-2.3021	-0.0012587	-2.9377	-0.0016062	546.7718597416558	81.044	0.82352	80.902	80.576	81.399	-0.14248					53	19	4	0	0	0	0.29644	1	9729	9729		113.41	6.4041	1	1520500			51530	7695	35937	35988	56828	56828					-0.009973230113018872
MKLHKIIKG	9	Unmodified	_MKLHKIIKG_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2699584960938	2	534.341529	1066.66851	-1.2605	-0.00067351	-1.9201	-0.001026	-3.1806	-0.0016995	534.3403914868856	62.137	0.57618	61.959	61.615	62.191	-0.17781					27	14	3	0	0	0	0.024541	1	6938	6938		17.365	5.1581	1	239140	+		51531	28819	35938	35989	56829	56829					0.1378383600986126
MKLIKLPE	8	Unmodified	_MKLIKLPE_					0	0	0			REV__ENST00000382226.5_2_4:17885629-17885674:-|nuORF	REV__ENST00000382226.5_2_4:17885629-17885674:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3033142089844	2	486.301539	970.588524	-0.068388	-3.3257E-05	3.7344	0.001816	3.666	0.0017828	486.3033066802314	20.146	0.77432	19.978	19.571	20.345	-0.16774					29	15	3	0	0	0	0.68535	1	518	518		68.485	10.673	1	628440	+		51532	31539	35939	35990	56830	56830					0.10205349616012427
MKLIMGLIKM	10	Oxidation (M)	_MKLIM(Oxidation (M))GLIKM_		MKLIM(1)GLIKM		M(-61)KLIM(61)GLIKM(-67)	0	0	1			REV__ENST00000295190.8_1_2:230924004-230933525:-|nuORF	REV__ENST00000295190.8_1_2:230924004-230933525:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.3421020507812	2	597.344566	1192.67458	-0.40594	-0.00024249	-3.0766	-0.0018378	-3.4826	-0.0020803	597.3426106904827	63.632	1.0832	63.632	63.301	64.384	0					70	29	4	0	0	0	0.42446	1	7449	7449		96.19	8.4361	3	3679600	+		51533	29975	35940	35991	56831	56831		865			0.08594850134863918
MKLKAEKK	8	Oxidation (M)	_M(Oxidation (M))KLKAEKK_		M(1)KLKAEKK		M(71)KLKAEKK	0	0	1		nc|ENSG00000128928|P26440-2|IVD;ENSG00000128928|ENST00000487418|IVD;nc|ENSG00000128928|P26440|IVD	nc|ENSG00000128928|P26440-2|IVD	nc|ENSG00000128928|P26440-2|IVD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.3002624511719	2	496.30207	990.589587	-0.39668	-0.00019687	-3.666	-0.0018195	-4.0627	-0.0020163	496.30024524162	33.325	1.6203	33.094	32.752	34.372	-0.23107					104	40	5	0	0	0	0.6536	1	2393	2393		71.296	7.9894	1	9170900			51534	4322	35941	35992	56832	56832		171			0.09391563984922868
MKLKGISGP	9	Unmodified	_MKLKGISGP_					0	0	0			REV__ENST00000415775.2_1_1:70225872-70503822:+|nuORF	REV__ENST00000415775.2_1_1:70225872-70503822:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77783203125	2	465.775688	929.536823	-0.52619	-0.00024508	4.4718	0.0020829	3.9456	0.0018378	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.82115	1	10006	10006		37.812	0.65241	1	1029300	+		51535	20052	35942	35993	56833	56833					0.06923605922122533
MKLLQCEEAST	11	Unmodified	_MKLLQCEEAST_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.2258605957031	3	418.201913	1251.58391	-0.14867	-6.2174E-05	-0.91743	-0.00038367	-1.0661	-0.00044584	418.2010167045959	24.83	0.48226	24.655	24.383	24.865	-0.17484					13	10	2	0	0	0	0.02477	1	1135	1135		17.167	7.5206	1	26151	+		51536	28058	35943	35994	56834	56834					-0.031819473797213504
MKLPLDALE	9	Unmodified	_MKLPLDALE_					0	0	0			REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF	REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2883911132812	2	515.286085	1028.55762	-0.85235	-0.00043921	4.1244	0.0021253	3.2721	0.0016861	515.288242289824	40.259	1.496	40.029	39.623	41.119	-0.23021					72	39	2	0	0	0	0.32811	2	3442	3442;3479		71.877	7.6702	1	18571000	+		51537	33019	35944	35995	56835;56836	56835					0.04448151511087417
MKLTRKMVLT	10	Unmodified	_MKLTRKMVLT_					0	0	0		nc|ENSG00000160226|O43822-4|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410	nc|ENSG00000160226|O43822-4|CFAP410	nc|ENSG00000160226|O43822-4|CFAP410	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.57916259765625	3	407.578766	1219.71447	0.52512	0.00021403	0.32988	0.00013445	0.855	0.00034848	407.57886276266305	34.334	1.7	34.384	34.047	35.747	0.050255					109	43	5	0	0	0	1.0816	1	2501	2501		35.152	2.4015	1	4101700			51538	18424	35945	35996	56837	56837					0.11340113129790552
MKLVIEVTF	9	Unmodified	_MKLVIEVTF_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3343505859375	2	540.312103	1078.60965	-0.76626	-0.00041402	-1.4544	-0.00078582	-2.2206	-0.0011998	540.3112051353781	79.262	1.0325	79.281	78.903	79.936	0.018677					65	24	4	0	0	0	0.024374	1	9808	9808		49.442	0	1	1428200	+		51539	20677	35946	35997	56838	56838					0.07349314924840655
MKMLLKQGW	9	Unmodified	_MKMLLKQGW_					0	0	0			REV__ENST00000349703.6_1_4:39313123-39314400:-|nuORF	REV__ENST00000349703.6_1_4:39313123-39314400:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.81103515625	2	567.811748	1133.60894	-0.73961	-0.00041996	-1.0921	-0.00062011	-1.8317	-0.0010401	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.27161	1	8320	8320		79.451	9.8234	1	14091000	+		51540	30726	35947	35998	56839	56839					0.047481970041872046
MKMLLKQGW	9	Unmodified	_MKMLLKQGW_					0	0	0			REV__ENST00000349703.6_1_4:39313123-39314400:-|nuORF	REV__ENST00000349703.6_1_4:39313123-39314400:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3090209960938	2	567.811748	1133.60894	-1.1634	-0.00066059	-0.73008	-0.00041455	-1.8935	-0.0010751	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.15029	1	8324	8324		99.375	0.74558	1	13770000	+		51541	30726	35947	35998	56840	56840					0.047481970041872046
MKMSLTYLD	9	Oxidation (M)	_MKM(Oxidation (M))SLTYLD_		MKM(1)SLTYLD		M(-57)KM(57)SLTYLD	0	0	1			REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.2660522460938	2	559.267035	1116.51952	0.45628	0.00025518	-3.4438	-0.001926	-2.9875	-0.0016708	559.2649350133187	83.458	3.4099	83.289	81.278	84.688	-0.16915					172	79	3	0	0	0	0.23085	1	10092	10092		84.916	7.5979	2	681630	+		51542	32229	35948	35999	56841	56841		893			-0.034081024658689785
MKNGTAVLPD	10	Unmodified	_MKNGTAVLPD_					0	0	0			REV__ENSG00000038295|ENST00000061240|TLL1	REV__ENSG00000038295|ENST00000061240|TLL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3233032226562	2	523.270967	1044.52738	0.10599	5.5462E-05	0.13343	6.9819E-05	0.23942	0.00012528	523.2706781396691	67.698	0.93172	67.722	66.855	67.786	0.023911					28	22	2	0	0	0	0.03519	1	7962	7962		88.177	16.299	1	367580	+		51543	20076	35949	36000	56842	56842					0.006897928459011382
MKNINMDNDL	10	Unmodified	_MKNINMDNDL_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-4|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.1874694824219	3	403.186374	1206.53729	0.50857	0.00020505	3.4283	0.0013822	3.9369	0.0015873	403.1877335838278	36.603	0.63497	36.398	36.127	36.762	-0.20518					49	15	4	0	0	0	1.0074	1	2884	2884		45.022	1.3714	1	2779000			51544	6518	35950	36001	56843	56843					-0.05771387210984358
MKNLYFQVNK	10	Unmodified	_MKNLYFQVNK_					0	0	0			REV__SYNE2|p.L1601V|1|0.1|ENSG00000054654|chr14:64016545-64016545|C/G|missense_variant	REV__SYNE2|p.L1601V|1|0.1|ENSG00000054654|chr14:64016545-64016545|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	642.8402099609375	2	642.842091	1283.66963	-0.32383	-0.00020817	-2.3343	-0.0015006	-2.6581	-0.0017087	642.8404101422449	86.6	1.0692	86.463	86.136	87.206	-0.13734					63	24	4	0	0	0	0.71272	1	10515	10515		66.429	9.9955	1	1133000	+		51545	37669	35951	36002	56844	56844					0.03914005588103464
MKNRLTKMASD	11	Unmodified	_MKNRLTKMASD_					0	0	0			REV__ENSG00000196604|ENST00000409914|POTEF	REV__ENSG00000196604|ENST00000409914|POTEF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.2827453613281	3	432.225052	1293.65333	-0.64281	-0.00027784	-2.8443	-0.0012294	-3.4871	-0.0015072	432.2238456250916	51.773	0.42516	51.86	51.61	52.035	0.087006					19	11	2	0	0	0	0.024739	1	5456	5456		42.338	8.2516	1	184650	+		51546	28021	35952	36003	56845	56845					0.01824556359702001
MKPIKGITN	9	Unmodified	_MKPIKGITN_					0	0	0		ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7680969238281	2	501.294245	1000.57394	-0.09125	-4.5743E-05	1.5053	0.0007546	1.4141	0.00070886	501.794673995459	54.611	0.28119	54.381	54.213	54.494	-0.23087					10	7	2	0	0	0	0.024495	1	5796	5796		19.997	0	1	57367			51547	7650	35953	36004	56846	56846					0.07367277467869826
MKPNTKCH	8	Unmodified	_MKPNTKCH_					0	0	0		ENSG00000135951|ENST00000393483|TSGA10	ENSG00000135951|ENST00000393483|TSGA10	ENSG00000135951|ENST00000393483|TSGA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.73590087890625	2	479.733497	957.452441	1.5712	0.00075377	1.506	0.00072249	3.0772	0.0014763	479.7342288093958	59.762	2.4881	59.762	58.965	61.453	0					160	66	4	0	0	0	0.94517	1	6891	6891		45.952	1.5748	1	57218000			51548	4958	35954	36005	56847	56847					-0.027986681663037416
MKPRTLAGVA	10	Unmodified	_MKPRTLAGVA_					0	0	0		ENST00000435485.5_1_9:109262681-109320839:+|nuORF	ENST00000435485.5_1_9:109262681-109320839:+|nuORF	ENST00000435485.5_1_9:109262681-109320839:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.8163452148438	2	522.305144	1042.59573	-1.0217	-0.00053361	-1.8051	-0.00094284	-2.8268	-0.0014764	522.3038285405835	65.139	0.4883	64.937	64.697	65.186	-0.20253					22	11	3	0	0	0	0.03519	1	7409	7409		36.447	3.6343	1	169250			51549	14262	35955	36006	56848	56848					0.0761408221644615
MKPVAPTGNAP	11	Unmodified	_MKPVAPTGNAP_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.7840576171875	2	541.786784	1081.55902	-0.7249	-0.00039274	-2.5802	-0.0013979	-3.3051	-0.0017906	541.7852362755399	67.259	1.1745	67.282	66.685	67.86	0.023903					65	28	3	0	0	0	0.67171	1	7951	7951		65.465	1.2581	1	2139300	+		51550	22317	35956	36007	56849	56849					0.02149785599885945
MKPWTLAVS	9	Unmodified	_MKPWTLAVS_					0	0	0		ENST00000597785.1_1_19:8439309-8454924:-|nuORF	ENST00000597785.1_1_19:8439309-8454924:-|nuORF	ENST00000597785.1_1_19:8439309-8454924:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3057250976562	2	516.78097	1031.54739	-0.41228	-0.00021306	-3.0771	-0.0015902	-3.4893	-0.0018032	517.2790011758115	60.457	0.669	60.203	59.794	60.463	-0.25374					52	16	5	0	0	0	0.024323	1	6713	6713		35.618	0	1	679650			51551	17456	35957	36008	56850	56850					0.032875885765406565
MKQLSKAKRK	10	Unmodified	_MKQLSKAKRK_					0	0	0			REV__nc|ENSG00000145901|Q15025-5|TNIP1	REV__nc|ENSG00000145901|Q15025-5|TNIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	609.3772583007812	2	609.379175	1216.7438	0.22339	0.00013613	-2.9982	-0.0018271	-2.7749	-0.0016909	609.3772721443714	25.264	0.71568	25.093	24.777	25.492	-0.17151					48	16	4	0	0	0	0.41983	1	1171	1171		65.465	21.088	1	867750	+		51552	36755	35958	36009	56851	56851					0.1440939347028234
MKQVKHIPKSK	11	Unmodified	_MKQVKHIPKSK_					0	0	0		ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.61822509765625	3	441.93583	1322.78566	-0.26583	-0.00011748	4.4623	0.001972	4.1965	0.0018546	441.9376963025453	17.05	1.051	16.843	16.662	17.713	-0.20777					40	20	4	0	0	0	0.024823	1	123	123		21.032	0	1	89201			51553	17447	35959	36010	56852	56852					0.13717949158785814
MKRFGLVV	8	Unmodified	_MKRFGLVV_					0	0	0			REV__ENSG00000203797|ENST00000368924|DDO	REV__ENSG00000203797|ENST00000368924|DDO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.249755859375	2	475.286223	948.557893	0.53592	0.00025471	-1.8815	-0.00089427	-1.3456	-0.00063955	475.2849207502862	49.855	0.40392	49.704	49.52	49.924	-0.1512					13	10	2	0	0	0	0.027866	1	5139	5139		28.254	0	1	49288	+		51554	28546	35960	36011	56853	56853					0.08155616021645073
MKRKRLENL	9	Oxidation (M)	_M(Oxidation (M))KRKRLENL_		M(1)KRKRLENL		M(72)KRKRLENL	0	0	1			REV__ENST00000523968.1_1_8:29043866-29043923:-|nuORF	REV__ENST00000523968.1_1_8:29043866-29043923:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.9035949707031	3	401.90453	1202.69176	-0.43037	-0.00017297	-2.2543	-0.00090602	-2.6847	-0.001079	401.9035898683265	30.615	0.95294	30.465	30.056	31.009	-0.14952					54	22	4	0	0	0	0.32811	1	1963	1963		71.877	11.759	1	1769100	+		51555	34365	35961	36012	56854	56854		934			0.0985223005654916
MKRKRLENL	9	Oxidation (M)	_M(Oxidation (M))KRKRLENL_					0	0	1			REV__ENST00000523968.1_1_8:29043866-29043923:-|nuORF	REV__ENST00000523968.1_1_8:29043866-29043923:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	401.90453	1202.69176	0.25409	0.00010212	-8.6774	-0.0034875	-8.4233	-0.0033854	401.9003011091933	30.794	0.79196	30.794	30.508	31.3	0	0.28889	-0.0072423	NaN	71.877	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465640	+		51556	34365	35961	36012				934			0.0985223005654916
MKRKRLENL	9	Oxidation (M)	_M(Oxidation (M))KRKRLENL_					0	0	1			REV__ENST00000523968.1_1_8:29043866-29043923:-|nuORF	REV__ENST00000523968.1_1_8:29043866-29043923:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	401.90453	1202.69176	1.6808	0.0006755	-4.9794	-0.0020012	-3.2986	-0.0013257	401.902267650748	30.338	0.41523	30.413	30.17	30.586	0.074316	-0.092391	-0.0027835	NaN	71.877	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281460	+		51557	34365	35961	36012				934			0.0985223005654916
MKRLKTLN	8	Unmodified	_MKRLKTLN_					0	0	0			REV__ENSG00000119684|ENST00000355774|MLH3	REV__ENSG00000119684|ENST00000355774|MLH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7775573730469	2	502.307687	1002.60082	0.43404	0.00021802	4.021	0.0020198	4.4551	0.0022378	502.80980893823414	72.062	0.72598	72.062	71.566	72.292	0					25	18	2	0	0	0	0.027866	1	8698	8698		94.006	0	1	481690	+		51558	22474	35962	36013	56855	56855					0.09962386079075713
MKRLRVPPL	9	Unmodified	_MKRLRVPPL_					0	0	0		nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.353271484375	2	555.352428	1108.6903	-0.21036	-0.00011683	2.2775	0.0012648	2.0672	0.001148	555.353605243723	99.586	0.64217	99.596	99.268	99.91	0.010231					45	14	4	0	0	0	0.80658	1	12683	12683		38.806	4.6336	1	1220000			51559	5633	35963	36014	56856	56856					0.14030640758437585
MKRLYCQT	8	Unmodified	_MKRLYCQT_					0	0	0		ENST00000591223.5_1_21:47660768-47663350:+|nuORF;ENST00000590829.5_1_21:47660768-47678876:+|nuORF;ENST00000588753.1_1_21:47660768-47664506:+|nuORF;ENST00000414659.5_1_21:47650273-47669514:+|nuORF	ENST00000591223.5_1_21:47660768-47663350:+|nuORF	ENST00000591223.5_1_21:47660768-47663350:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3246459960938	2	521.762255	1041.50996	-0.29394	-0.00015337	0.15454	8.0636E-05	-0.13939	-7.2729E-05	522.263907174839	49.561	0.22058	49.561	49.473	49.694	0					7	5	2	0	0	0	0.027866	1	5126	5126		30.504	0	1	128580			51560	13864	35964	36015	56857	56857					-0.009138259607198052
MKRRAVKIRHC	11	Unmodified	_MKRRAVKIRHC_					0	0	0		ENST00000494116.1_1_11:111759925-111760129:-|nuORF;nc|ENSG00000176343|A6NKH3|RPL37AP8	ENST00000494116.1_1_11:111759925-111760129:-|nuORF	ENST00000494116.1_1_11:111759925-111760129:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.6085205078125	3	466.607942	1396.802	1.035	0.00048292	-0.78165	-0.00036472	0.25331	0.0001182	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.0739	1	12777	12777		18.531	4.445	1	655350			51561	15520	35965	36016	56858	56858					0.11946751843925085
MKRRKSGF	8	Unmodified	_MKRRKSGF_					0	0	0		ENST00000379716.5_1_X:19554566-19555875:-|nuORF	ENST00000379716.5_1_X:19554566-19555875:-|nuORF	ENST00000379716.5_1_X:19554566-19555875:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.29180908203125	2	505.289828	1008.5651	-0.43912	-0.00022188	3.8705	0.0019557	3.4314	0.0017338	505.2916012295089	96.165	1.7663	96.165	95.648	97.415	0					82	40	3	0	0	0	1.0574	1	12258	12258		23.042	2.0956	1	919050			51562	13281	35966	36017	56859	56859					0.0611634862207211
MKSCILTV	8	Carbamidomethyl (C)	_MKSC(Carbamidomethyl (C))ILTV_	MKSC(1)ILTV		MKSC(100)ILTV		0	1	0			REV__CON__ENSEMBL:ENSBTAP00000011227	REV__CON__ENSEMBL:ENSBTAP00000011227	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.251953125	2	476.253731	950.492909	0.50851	0.00024218	-3.5645	-0.0016976	-3.056	-0.0014554	476.25186586475587	90.804	0.70289	90.816	90.534	91.237	0.011276					38	16	4	0	0	0	0.35998	1	11408	11408		102.77	14.13	1	1842400	+	+	51563	19523	35967	36018	56860	56860	244				0.01568253433481459
MKSIIKATNLC	11	Unmodified	_MKSIIKATNLC_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.89501953125	3	407.894643	1220.6621	0.25622	0.00010451	0.32869	0.00013407	0.58491	0.00023858	407.8947313100723	75.391	1.1198	75.118	74.766	75.885	-0.27266					65	27	4	0	0	0	0.78452	1	8915	8915		58.63	0	1	1547700			51564	4136	35968	36019	56861	56861					0.06059529996173296
MKSPVVFSQ	9	Unmodified	_MKSPVVFSQ_					0	0	0		ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7723693847656	2	511.770603	1021.52665	-0.49525	-0.00025346	4.1681	0.0021331	3.6729	0.0018797	511.7724497241453	31.696	0.98136	31.544	31.269	32.25	-0.15231					44	23	3	0	0	0	0.28753	1	2119	2119		77.318	7.69	1	1508300			51565	9905	35969	36020	56862	56862					0.016749981968928296
MKTAIFQVTL	10	Unmodified	_MKTAIFQVTL_					0	0	0		ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	ENST00000261263.4_1_12:72179453-72179861:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.3256225585938	2	576.328285	1150.64202	-0.24848	-0.00014321	-2.7536	-0.001587	-3.0021	-0.0017302	576.326755514441	104.23	0.57338	104.23	103.98	104.55	-0.0032196					35	13	4	0	0	0	0.54901	1	13308	13308		82.75	0.50997	1	411850			51566	11466	35970	36021	56863	56863					0.07272102327874563
MKTFKDEEL	9	Oxidation (M)	_M(Oxidation (M))KTFKDEEL_		M(1)KTFKDEEL		M(90)KTFKDEEL	0	0	1		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MSMS	OPSCC_39_ClassI_Rep-2	2	578.7819213867188	2	578.781364	1155.54818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.508	1	36.465	35.965	36.965	-0.042454								0	0	0	0.1093	1	2891	2891		90.37	10.657	1				51567	4976	35971	36022	56864	56864		203			-0.023376615650931853
MKTHTGEKP	9	Unmodified	_MKTHTGEKP_					0	0	0		ENSG00000198740|ENST00000430262|ZNF652;nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	ENSG00000198740|ENST00000430262|ZNF652	ENSG00000198740|ENST00000430262|ZNF652	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2774047851562	2	514.763309	1027.51206	-0.33734	-0.00017365	-0.51232	-0.00026372	-0.84966	-0.00043737	514.763968596977	68.676	0.33172	68.695	68.573	68.904	0.018913					11	8	2	0	0	0	0.023478	1	8172	8172		36.318	0	1	171290			51568	10185	35972	36023	56865	56865					-0.0005907395125177572
MKTLKKTF	8	Unmodified	_MKTLKKTF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7352294921875	2	498.799163	995.583773	-0.57653	-0.00028757	2.2599	0.0011272	1.6834	0.00083967	498.7978136005338	31.239	0.45068	31.086	30.928	31.379	-0.15231					14	11	2	0	0	0	0.027866	1	2021	2021		52.299	2.2746	1	223490	+		51569	25017	35973	36024	56866	56866					0.08580465473255572
MKTLKKTF	8	Unmodified	_MKTLKKTF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.799163	995.583773	-0.70206	-0.00035019	4.7975	0.002393	4.0954	0.0020428	498.8012113185038	31.013	0.33512	31.013	30.838	31.173	0	0.072304	0.0017697	NaN	42.474	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135010	+		51570	25017	35973	36024							0.08580465473255572
MKTLKKTF	8	Unmodified	_MKTLKKTF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.799163	995.583773	-0.4031	-0.00020107	4.6161	0.0023025	4.213	0.0021015	498.80104315430185	30.923	0.42045	30.935	30.75	31.17	0.011797	-0.0061692	0.0015888	NaN	42.474	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137750	+		51571	25017	35973	36024							0.08580465473255572
MKTLKKTF	8	Unmodified	_MKTLKKTF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.799163	995.583773	-0.39455	-0.0001968	4.6795	0.0023341	4.285	0.0021373	498.8010327321791	30.655	0.50108	30.729	30.544	31.045	0.074314	-0.21151	0.0016521	NaN	42.474	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107080	+		51572	25017	35973	36024							0.08580465473255572
MKVKKARSV	9	Unmodified	_MKVKKARSV_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.8289794921875	2	523.828786	1045.64302	0.18516	9.699E-05	-0.84864	-0.00044454	-0.66349	-0.00034755	523.8281955832971	102.07	0.55208	101.94	101.68	102.23	-0.12931					35	13	4	0	0	0	0.93097	1	12668	12668		30.318	2.4355	1	371010	+		51573	29168;36188	35974	36025	56867	56867					0.12202361487425151
MKVKKARSV	9	Unmodified	_MKVKKARSV_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.828786	1045.64302	-0.93359	-0.00048904	0.56942	0.00029828	-0.36417	-0.00019076	523.8288902269682	102.2	0.62015	102.2	101.95	102.57	0	0.13452	0.001189	NaN	30.318	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364020	+		51574	29168;36188	35974	36025							0.12202361487425151
MKVKKARSV	9	Unmodified	_MKVKKARSV_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.828786	1045.64302	-0.28975	-0.00015178	-0.099407	-5.2072E-05	-0.38915	-0.00020385	523.8285615595636	102.14	0.68562	102.15	101.86	102.55	0.0073471	0.085933	0.00048828	NaN	30.318	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394420	+		51575	29168;36188	35974	36025							0.12202361487425151
MKVKKARSV	9	Unmodified	_MKVKKARSV_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.828786	1045.64302	0.20846	0.0001092	-0.95788	-0.00050177	-0.74942	-0.00039257	523.8282737139558	102.25	0.66194	102.24	101.93	102.59	-0.0054474	0.17552	-0.00041111	NaN	30.318	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361070	+		51576	29168;36188	35974	36025							0.12202361487425151
MKVKKARSV	9	Unmodified	_MKVKKARSV_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	523.828786	1045.64302	0.18516	9.699E-05	-0.84864	-0.00044454	-0.66349	-0.00034755	523.8281955832971	102.07	0.55208	101.94	101.68	102.23	-0.12931	-0.13018	-0.00029667	NaN	30.318	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371010	+		51577	29168;36188	35974	36025							0.12202361487425151
MKVKKARSV	9	Unmodified	_MKVKKARSV_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.828786	1045.64302	0.21962	0.00011504	-0.70285	-0.00036817	-0.48324	-0.00025313	523.828192514643	102.02	0.77344	101.89	101.59	102.36	-0.12666	-0.17222	-0.00014393	NaN	30.318	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377450	+		51578	29168;36188	35974	36025							0.12202361487425151
MKVKKARSV	9	Unmodified	_MKVKKARSV_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.828786	1045.64302	0.28702	0.00015035	-0.75351	-0.00039471	-0.46649	-0.00024436	523.8281305474898	102.14	0.6385	101.97	101.69	102.33	-0.17178	-0.093577	-0.000197	NaN	30.318	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417470	+		51579	29168;36188	35974	36025							0.12202361487425151
MKVVTKNPN	9	Unmodified	_MKVVTKNPN_					0	0	0			REV__ENSG00000047346|ENST00000619572|ATOSA	REV__ENSG00000047346|ENST00000619572|ATOSA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2637329101562	2	515.789327	1029.5641	-1.5685	-0.00080902	1.4242	0.00073459	-0.1443	-7.4426E-05	516.2911133550011	29.672	0.52733	29.672	29.408	29.936	0					19	12	2	0	0	0	0.024427	1	1831	1831		42.396	3.59	1	71591	+		51580	20123	35975	36026	56868	56868					0.05050089462520191
MLAEEVPLE	9	Unmodified	_MLAEEVPLE_					0	0	0			REV__nc|ENSG00000166444|P78524-3|DENND2B	REV__nc|ENSG00000166444|P78524-3|DENND2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7611083984375	2	515.759901	1029.50525	-0.51703	-0.00026666	0.57854	0.00029839	0.061513	3.1726E-05	515.7600938103367	70.803	0.81407	70.814	70.465	71.279	0.010735					44	19	4	0	0	0	0.31247	1	8483	8483		73.975	5.1879	1	1199900	+		51581	26017	35976	36027	56869	56869					-0.008324316224843642
MLAEEVPLE	9	Unmodified	_MLAEEVPLE_					0	0	0			REV__nc|ENSG00000166444|P78524-3|DENND2B	REV__nc|ENSG00000166444|P78524-3|DENND2B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	515.759901	1029.50525	-0.51703	-0.00026666	0.57854	0.00029839	0.061513	3.1726E-05	515.7600938103367	70.803	0.81407	70.814	70.465	71.279	0.010735	0.037027	0.00078011	NaN	73.975	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1199900	+		51582	26017	35976	36027							-0.008324316224843642
MLAEEWKR	8	Unmodified	_MLAEEWKR_					0	0	0		ENSG00000185933|ENST00000329905|CALHM1	ENSG00000185933|ENST00000329905|CALHM1	ENSG00000185933|ENST00000329905|CALHM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7760009765625	2	531.773677	1061.5328	1.0933	0.00058137	4.3569	0.0023169	5.4501	0.0028982	531.776185877007	82.947	1.0697	82.84	82.382	83.452	-0.10748					69	24	5	0	0	0	0.24207	2	10323	10323;10335		133.47	13.019	1	3816400			51583	9492	35977	36028	56870;56871	56870					0.004495164283980557
MLAEKDKDI	9	Unmodified	_MLAEKDKDI_					0	0	0			REV__BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	REV__BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7761840820312	2	531.778625	1061.5427	-0.78411	-0.00041697	-3.0301	-0.0016113	-3.8142	-0.0020283	531.777215766453	82.788	1.237	82.814	82.19	83.427	0.02655					80	28	5	0	0	0	0.077175	1	10264	10264		118.74	0	1	3936900	+		51584	19206	35978	36029	56872	56872					0.014386596431222642
MLAFGLLY	8	Unmodified	_MLAFGLLY_					0	0	0		ENST00000355803.8_1_16:1359045-1359090:+|nuORF	ENST00000355803.8_1_16:1359045-1359090:+|nuORF	ENST00000355803.8_1_16:1359045-1359090:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2510070800781	2	464.254057	926.493561	0.049798	2.3119E-05	3.8047	0.0017664	3.8545	0.0017895	464.2556207861865	64.735	0.56396	64.778	64.522	65.086	0.042984					25	14	2	0	0	0	0.027866	1	7591	7591		16.705	0	1	417360			51585	12656	35979	36030	56873	56873					0.027374161448278755
MLAHLTSASA	10	Unmodified	_MLAHLTSASA_					0	0	0		ENST00000498376.1_1_3:49758010-49758405:+|nuORF;ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123	ENST00000498376.1_1_3:49758010-49758405:+|nuORF	ENST00000498376.1_1_3:49758010-49758405:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2903747558594	2	501.257859	1000.50117	0.41523	0.00020814	-3.444	-0.0017263	-3.0288	-0.0015182	501.2555830904816	85.416	0.29799	85.221	85.047	85.345	-0.19508					9	6	2	0	0	0	0.03519	1	10327	10327		35.618	14.671	1	28293			51586	7202	35980	36031	56874	56874					0.000935236744339818
MLAHLTSASA	10	Unmodified	_MLAHLTSASA_					0	0	0		ENST00000498376.1_1_3:49758010-49758405:+|nuORF;ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123	ENST00000498376.1_1_3:49758010-49758405:+|nuORF	ENST00000498376.1_1_3:49758010-49758405:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2903747558594	2	501.257859	1000.50117	0.44154	0.00022133	3.6674	0.0018383	4.1089	0.0020596	501.2589760554183	85.32	0.28325	85.125	84.888	85.172	-0.19508					8	6	2	0	0	0	0.03519	1	10327	10327		35.618	6.4687	1	54998			51587	7202	35980	36031	56875	56875					0.000935236744339818
MLAILSIGDA	10	Unmodified	_MLAILSIGDA_					0	0	0		ENSG00000197753|ENST00000360215|LHFPL5	ENSG00000197753|ENST00000360215|LHFPL5	ENSG00000197753|ENST00000360215|LHFPL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2901916503906	2	502.27826	1002.54197	-0.49895	-0.00025061	0.44123	0.00022162	-0.05772	-2.8992E-05	502.7804717389	82.847	0.25804	82.874	82.788	83.046	0.02655					6	5	2	0	0	0	0.03519	1	10295	10295		21.96	11.695	1	131760			51588	10045	35981	36032	56876	56876					0.040798649940711584
MLAKQSTSKV	10	Unmodified	_MLAKQSTSKV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.3267822265625	2	546.807716	1091.60088	-0.27762	-0.00015181	1.2613	0.00068967	0.98364	0.00053786	546.808250318638	79.84	0.79051	79.689	79.404	80.195	-0.15051					42	18	4	0	0	0	0.03519	1	9542	9542		54.776	8.8041	1	1028100			51589	10361	35982	36033	56877	56877					0.05874341288404139
MLAKVDPVC	9	Unmodified	_MLAKVDPVC_					0	0	0			REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79083251953125	2	488.253731	974.492909	-0.7096	-0.00034646	0.63664	0.00031084	-0.072959	-3.5622E-05	488.254087864996	82.469	0.81157	82.495	82.147	82.959	0.025711					58	18	5	0	0	0	0.024323	1	10237	10237		35.618	4.0885	1	1305200	+		51590	24069	35983	36034	56878	56878					0.004642534334720949
MLALNQLAQ	9	Unmodified	_MLALNQLAQ_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2903137207031	2	501.276052	1000.53755	0.19153	9.601E-05	1.1094	0.00055611	1.3009	0.00065212	501.27785411323936	85.143	0.37562	85.006	84.908	85.284	-0.13752					9	8	2	0	0	0	0.024457	1	10290	10290		21.96	0	1	61766	+		51591	20389	35984	36035	56879	56879					0.03730400571168957
MLALRTLLS	9	Unmodified	_MLALRTLLS_					0	0	0			REV__nc|ENSG00000163482|Q9NRP7-2|STK36	REV__nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.78729248046875	2	509.309895	1016.60524	-2.1319	-0.0010858	-0.84619	-0.00043097	-2.9781	-0.0015168	509.30977551264397	60.332	0.33352	60.411	60.203	60.536	0.078888					11	8	2	0	0	0	0.024405	1	6840	6840		44.117	0	1	97595	+		51592	25572	35985	36036	56880	56880					0.09759850501984602
MLALSWALA	9	Unmodified	_MLALSWALA_					0	0	0		ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.25909423828125	2	488.270238	974.525924	-0.14877	-7.2641E-05	3.1779	0.0015517	3.0292	0.0014791	488.27183297423096	41.57	0.17216	41.446	41.328	41.5	-0.12317					5	4	2	0	0	0	0.024325	1	3713	3713		60.294	2.4827	1	205590			51593	9059	35986	36037	56881	56881					0.037642035478029356
MLAMILLLGV	10	Unmodified	_MLAMILLLGV_					0	0	0			REV__ENSG00000185900|ENST00000331373|POMK	REV__ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.3235473632812	2	537.326699	1072.63885	-0.80303	-0.00043149	-4.145	-0.0022272	-4.948	-0.0026587	537.3232327880409	82.72	1.7538	82.72	82.113	83.866	0					150	40	6	0	0	0	0.47568	1	10368	10368		90.939	25.042	1	1791400	+		51594	27804	35987	36038	56882	56882					0.10543135949546922
MLAMTALTVR	10	Unmodified	_MLAMTALTVR_					0	0	0		ENST00000512400.1_1_4:675749-678780:-|nuORF;nc|ENSG00000169026|Q6UXD7-3|SLC49A3;ENSG00000169026|ENST00000322224|SLC49A3;nc|ENSG00000169026|Q6UXD7|SLC49A3	ENST00000512400.1_1_4:675749-678780:-|nuORF	ENST00000512400.1_1_4:675749-678780:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.7742919921875	2	553.806662	1105.59877	-1.0117	-0.00056026	3.5668	0.0019753	2.5552	0.0014151	553.8085053840773	84.489	0.70721	84.417	84.134	84.842	-0.072777					51	16	4	0	0	0	0.03519	1	10578	10578		45.972	14.017	1	469200			51595	7892	35988	36039	56883	56883					0.050195892789361096
MLAPPLASGG	10	Unmodified	_MLAPPLASGG_					0	0	0			REV__ENST00000448963.5_1_10:91597071-91597797:+|nuORF	REV__ENST00000448963.5_1_10:91597071-91597797:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.2643737792969	2	457.244221	912.473888	0.22028	0.00010072	2.5047	0.0011453	2.725	0.001246	457.2458618819754	81.263	0.1657	81.069	80.924	81.09	-0.19334					5	3	2	0	0	0	0.03519	1	9767	9767		45.952	8.7928	1	39791	+		51596	32665	35989	36040	56884	56884					0.014150401340657481
MLAPQVGTA	9	Unmodified	_MLAPQVGTA_					0	0	0		nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	nc|ENSG00000171931|Q5XX13-3|FBXW10	nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.26373291015625	2	444.236396	886.458238	0.47664	0.00021174	-0.14144	-6.2833E-05	0.3352	0.00014891	444.2362192568107	72.65	1.0075	72.66	72.21	73.217	0.0097733					40	24	2	0	0	0	0.024381	1	8801	8801		29.15	17.639	1	540980			51597	8218	35990	36041	56885	56885					0.010467536170267522
MLAPQVGTA	9	Unmodified	_MLAPQVGTA_					0	0	0		nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	nc|ENSG00000171931|Q5XX13-3|FBXW10	nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	444.236396	886.458238	0.62395	0.00027718	-0.35749	-0.00015881	0.26646	0.00011837	444.2361842097184	73.028	0.81297	72.747	72.344	73.157	-0.28124	0.056205	-0.00026215	NaN	42.396	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608130			51598	8218	35990	36041							0.010467536170267522
MLAQVPGNEM	10	Unmodified	_MLAQVPGNEM_					0	0	0			REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF	REV__ENST00000480586.1_1_1:32050752-32051478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8158569335938	2	545.257002	1088.49945	0.12482	6.8059E-05	2.4178	0.0013183	2.5427	0.0013864	545.2579866907666	67.336	0.36607	67.083	66.83	67.196	-0.25303					26	8	4	0	0	0	0.03519	1	7736	7736		51.335	6.8044	1	933510	+		51599	24186	35991	36042	56886	56886					-0.04125853405798807
MLAVINPIS	9	Unmodified	_MLAVINPIS_					0	0	0		ENST00000336273.7_1_8:98712017-98712077:+|nuORF	ENST00000336273.7_1_8:98712017-98712077:+|nuORF	ENST00000336273.7_1_8:98712017-98712077:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2774963378906	2	479.275521	956.536489	0.21198	0.0001016	4.1284	0.0019786	4.3404	0.0020802	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.75397	1	10533	10533		42.396	0	1	4888300			51600	12405	35992	36043	56887	56887					0.05648186202256511
MLAVKTELP	9	Unmodified	_MLAVKTELP_					0	0	0		ENSG00000100987|ENST00000376709|VSX1;nc|ENSG00000100987|Q9NZR4-6|VSX1;nc|ENSG00000100987|Q9NZR4-7|VSX1;nc|ENSG00000100987|Q9NZR4-2|VSX1;nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;nc|ENSG00000100987|Q9NZR4-3|VSX1	ENSG00000100987|ENST00000376709|VSX1	ENSG00000100987|ENST00000376709|VSX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2903137207031	2	501.288628	1000.5627	0.41475	0.00020791	3.1647	0.0015864	3.5794	0.0017943	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	0.55828	1	10145	10145		55.504	13.108	1	2920800			51601	2269	35993	36044	56888	56888					0.06244455373735036
MLAVKTELP	9	Unmodified	_MLAVKTELP_					0	0	0		ENSG00000100987|ENST00000376709|VSX1;nc|ENSG00000100987|Q9NZR4-6|VSX1;nc|ENSG00000100987|Q9NZR4-7|VSX1;nc|ENSG00000100987|Q9NZR4-2|VSX1;nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;nc|ENSG00000100987|Q9NZR4-3|VSX1	ENSG00000100987|ENST00000376709|VSX1	ENSG00000100987|ENST00000376709|VSX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2886962890625	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.59099	2	10627	10540;10627		53.351	7.3995	1	10571000			51602	2269	35993	36044	56889;56890	56890					0.06244455373735036
MLAVKTELP	9	Unmodified	_MLAVKTELP_					0	0	0		ENSG00000100987|ENST00000376709|VSX1;nc|ENSG00000100987|Q9NZR4-6|VSX1;nc|ENSG00000100987|Q9NZR4-7|VSX1;nc|ENSG00000100987|Q9NZR4-2|VSX1;nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;nc|ENSG00000100987|Q9NZR4-3|VSX1	ENSG00000100987|ENST00000376709|VSX1	ENSG00000100987|ENST00000376709|VSX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29022216796875	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.84115	1	10574	10574		36.447	0.82846	1	10074000			51603	2269	35993	36044	56891	56891					0.06244455373735036
MLAVVKCIR	9	Carbamidomethyl (C)	_MLAVVKC(Carbamidomethyl (C))IR_	MLAVVKC(1)IR		MLAVVKC(50)IR		0	1	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3157958984375	2	545.317197	1088.61984	-0.23737	-0.00012944	-0.82544	-0.00045013	-1.0628	-0.00057957	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.64155	1	10883	10883		50.025	14.406	1	3529900			51604	9946	35994	36045	56892	56892	136				0.07907599378449959
MLAVVKCIR	9	Carbamidomethyl (C)	_MLAVVKC(Carbamidomethyl (C))IR_	MLAVVKC(1)IR		MLAVVKC(41)IR		0	1	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165283203125	2	545.317197	1088.61984	-0.46982	-0.0002562	-0.5756	-0.00031388	-1.0454	-0.00057009	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.78069	1	11219	11219		40.573	6.651	1	12792000			51605	9946	35994	36045	56893	56893	136				0.07907599378449959
MLAYQQKF	8	Unmodified	_MLAYQQKF_					0	0	0			REV__ENSG00000166188|ENST00000299237|ZNF319	REV__ENSG00000166188|ENST00000299237|ZNF319	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.295166015625	2	514.76532	1027.51609	-1.3698	-0.00070512	3.4983	0.0018008	2.1286	0.0010957	514.7660097181628	85.899	0.21229	85.923	85.86	86.072	0.023666					6	4	2	0	0	0	0.027866	1	10711	10711		29.842	0	1	59058	+		51606	25989	35995	36046	56894	56894					0.003430155424439363
MLCGLPVW	8	Unmodified	_MLCGLPVW_					0	0	0			REV__ENST00000396504.6_1_22:41923998-41924697:-|nuORF	REV__ENST00000396504.6_1_22:41923998-41924697:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2511901855469	2	459.732435	917.450316	0.41693	0.00019168	2.7185	0.0012498	3.1354	0.0014415	459.733448442372	67.247	0.73637	67.271	66.898	67.635	0.023911					23	17	2	0	0	0	0.027866	1	7965	7965		24.504	0	1	142340	+		51607	31740	35996	36047	56895	56895					-0.011710969041132557
MLCGNLIML	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LC(Carbamidomethyl (C))GNLIML_	MLC(1)GNLIML	M(1)LCGNLIML	MLC(58)GNLIML	M(41)LCGNLIM(-41)L	0	1	1			REV__ENST00000504836.5_1_4:89680131-89689179:-|nuORF	REV__ENST00000504836.5_1_4:89680131-89689179:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7645874023438	2	540.766148	1079.51774	-0.5647	-0.00030537	-2.7414	-0.0014825	-3.3061	-0.0017878	540.7645142367262	49.686	1.4253	49.686	49.249	50.675	0					129	40	5	0	0	0	0.52323	1	5135	5135		57.811	6.4758	2	5786300	+		51608	33992	35997	36048	56896	56896	448	926			-0.01883434755450253
MLCLSERY	8	Unmodified	_MLCLSERY_					0	0	0			REV__ENST00000494724.5_1_1:157666096-157666938:-|nuORF	REV__ENST00000494724.5_1_1:157666096-157666938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.269775390625	2	507.740988	1013.46742	-0.57843	-0.00029369	0.68827	0.00034946	0.10984	5.5772E-05	507.741176857104	45.27	0.9555	45.171	44.71	45.666	-0.099445					59	26	3	0	0	0	0.027866	1	4214	4214		30.504	4.9296	1	1190800	+		51609	33787	35998	36049	56897	56897					-0.038772210889646885
MLCNLHIVL	9	Unmodified	_MLCNLHIVL_					0	0	0		TIMMDC1|p.S108Rfs*40|1|0.41|ENSG00000113845|chr3:119500819-119500820|-/AG|frameshift_variant	TIMMDC1|p.S108Rfs*40|1|0.41|ENSG00000113845|chr3:119500819-119500820|-/AG|frameshift_variant	TIMMDC1|p.S108Rfs*40|1|0.41|ENSG00000113845|chr3:119500819-119500820|-/AG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2394409179688	2	528.290648	1054.56674	-0.23995	-0.00012676	-3.9442	-0.0020837	-4.1842	-0.0022105	528.2884827096885	63.534	0.14433	63.283	63.156	63.3	-0.25141					6	3	2	0	0	0	0.024487	1	7404	7404		31.955	6.5047	1	58896			51610	38074	35999	36050	56898	56898					0.041642215957836015
MLCRNCIV	8	2 Carbamidomethyl (C)	_MLC(Carbamidomethyl (C))RNC(Carbamidomethyl (C))IV_	MLC(1)RNC(1)IV		MLC(80)RNC(80)IV		0	2	0		ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2554321289062	2	533.253739	1064.49293	-0.87055	-0.00046423	3.6978	0.0019718	2.8272	0.0015076	533.2555697474653	52.784	1.3352	52.784	52.391	53.726	0					88	35	5	0	0	0	0.56067	2	5656	5656;5692		79.939	28.604	1	4120900			51611	14494	36000	36051	56899;56900	56899	194;195				-0.03674069838189098
MLCRNCIV	8	2 Carbamidomethyl (C)	_MLC(Carbamidomethyl (C))RNC(Carbamidomethyl (C))IV_	MLC(1)RNC(1)IV		MLC(71)RNC(71)IV		0	2	0		ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.2553100585938	2	533.253739	1064.49293	-0.46192	-0.00024632	3.3145	0.0017675	2.8526	0.0015212	533.2553852975732	52.897	1.2366	52.75	52.366	53.602	-0.14723					88	32	4	0	0	0	0.65272	1	5685	5685		71.378	9.2705	1	4265700			51612	14494	36000	36051	56901	56901	194;195				-0.03674069838189098
MLCRNCIV	8	2 Carbamidomethyl (C)	_MLC(Carbamidomethyl (C))RNC(Carbamidomethyl (C))IV_	MLC(1)RNC(1)IV		MLC(41)RNC(41)IV		0	2	0		ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.800048828125	2	533.253739	1064.49293	-0.71102	-0.00037915	3.612	0.0019261	2.901	0.0015469	533.2555446697619	56.689	2.0735	56.525	55.583	57.656	-0.16431					132	56	3	0	0	0	0.027866	1	6429	6429		40.573	16.37	1	1415200			51613	14494	36000	36051	56902	56902	194;195				-0.03674069838189098
MLCRNCIV	8	2 Carbamidomethyl (C)	_MLC(Carbamidomethyl (C))RNC(Carbamidomethyl (C))IV_	MLC(1)RNC(1)IV		MLC(80)RNC(80)IV		0	2	0		ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	ENST00000449165.5_2_21:43305370-43305490:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.2551879882812	2	533.253739	1064.49293	-0.22367	-0.00011927	2.9896	0.0015942	2.766	0.001475	533.2552024800387	52.662	1.1483	52.754	52.404	53.552	0.091942					85	30	4	0	0	0	0.56067	1	5573	5573		79.939	19.645	1	5029700			51614	14494	36000	36051	56903	56903	194;195				-0.03674069838189098
MLDFGEKRTC	10	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LDFGEKRTC(Carbamidomethyl (C))_	MLDFGEKRTC(1)	M(1)LDFGEKRTC	MLDFGEKRTC(55)	M(55)LDFGEKRTC	0	1	1		ENST00000498512.5_1_2:197504460-197537114:+|nuORF	ENST00000498512.5_1_2:197504460-197537114:+|nuORF	ENST00000498512.5_1_2:197504460-197537114:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.862548828125	3	424.861891	1271.56384	-0.19978	-8.4879E-05	0.646	0.00027446	0.44622	0.00018958	424.86215635740484	30.006	0.63937	29.761	29.482	30.122	-0.24415					54	14	5	0	0	0	0.88431	1	1879	1879		55.084	15.211	1	1431000			51615	15622	36001	36052	56904	56904	208	521			-0.06107698319624433
MLDLYSELK	9	Unmodified	_MLDLYSELK_					0	0	0			REV__ENSG00000152240|ENST00000282058|HAUS1	REV__ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.289306640625	2	556.288825	1110.5631	0.0623	3.4657E-05	2.0554	0.0011434	2.1177	0.001178	556.2886302934431	67.309	3.4678	67.309	66.487	69.954	0					206	88	5	0	0	0	0.27161	1	8017	8017		79.451	10.664	1	3137100	+		51616	24826	36002	36053	56905	56905					0.01223830302933493
MLDLYSELK	9	Unmodified	_MLDLYSELK_					0	0	0			REV__ENSG00000152240|ENST00000282058|HAUS1	REV__ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.2896728515625	2	556.288825	1110.5631	-0.28254	-0.00015718	2.0208	0.0011241	1.7382	0.00096696	556.2888474042767	67.657	2.7348	67.369	66.581	69.316	-0.28834					168	69	4	0	0	0	0.50848	1	8047	8047		58.782	0	1	3080900	+		51617	24826	36002	36053	56906	56906					0.01223830302933493
MLDLYSELK	9	Unmodified	_MLDLYSELK_					0	0	0			REV__ENSG00000152240|ENST00000282058|HAUS1	REV__ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2890014648438	2	556.288825	1110.5631	-0.05395	-3.0012E-05	0.40834	0.00022716	0.35439	0.00019715	556.2889888004471	65.231	1.5317	65.268	64.634	66.166	0.037384					123	41	4	0	0	0	0.33245	2	7609	7609;7632		71.296	7.7619	1	13338000	+		51618	24826	36002	36053	56907;56908	56907					0.01223830302933493
MLDQTLLEL	9	Unmodified	_MLDQTLLEL_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2879028320312	2	538.288825	1074.5631	-0.74613	-0.00040163	0.74312	0.00040001	-0.0030081	-1.6192E-06	538.2889582065523	89.577	0.82284	89.577	89.27	90.093	0					44	19	3	0	0	0	0.03666	2	11303	11303;11314		136.27	14.092	1	1648400			51619	18335	36003	36054	56909;56910	56909					0.028798303029361705
MLDQTLLEL	9	Unmodified	_MLDQTLLEL_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2886962890625	2	538.288825	1074.5631	-1.0337	-0.00055644	1.3871	0.00074664	0.35335	0.0001902	538.2893144109066	89.61	0.84308	89.448	89.133	89.976	-0.1626					47	19	3	0	0	0	0.22902	1	10931	10931		85.161	0.2453	1	1277300			51620	18335	36003	36054	56911	56911					0.028798303029361705
MLDQTLLEL	9	Unmodified	_MLDQTLLEL_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-3|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2891235351562	2	538.288825	1074.5631	-0.69214	-0.00037257	1.2643	0.00068058	0.5722	0.00030801	538.2891852315364	89.563	1.0461	89.435	89.159	90.205	-0.12774					61	24	5	0	0	0	0.1158	2	10955	10944;10955		107.01	2.4561	1	1273700			51621	18335	36003	36054	56912;56913	56913					0.028798303029361705
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.75048828125	2	568.750064	1135.48558	0.79996	0.00045497	-0.70832	-0.00040286	0.091633	5.2116E-05	568.7496266927187	51.094	0.91334	50.982	50.525	51.438	-0.11163					48	23	4	0	0	0	0.15889	1	5233	5233		97.473	31.67	1	1518000			51622	9952	36004	36055	56914	56914					-0.07674807633247838
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.7498779296875	2	568.750064	1135.48558	-0.17778	-0.00010111	0.003789	2.155E-06	-0.17399	-9.8955E-05	568.7499615034187	51.35	0.80172	51.073	50.702	51.504	-0.27643					44	20	3	0	0	0	0.11848	1	5263	5263		106.42	37.931	1	1460200			51623	9952	36004	36055	56915	56915					-0.07674807633247838
MLDSHEELY	9	Unmodified	_MLDSHEELY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.75048828125	2	568.750064	1135.48558	0.90697	0.00051584	-0.99429	-0.0005655	-0.087322	-4.9665E-05	568.7491328119745	51.147	0.84317	50.966	50.61	51.453	-0.18071					51	21	4	0	0	0	0.15889	1	5239	5239		97.473	31.67	1	1458500			51624	9952	36004	36055	56916	56916					-0.07674807633247838
MLDVLLMPY	9	Unmodified	_MLDVLLMPY_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.7837524414062	2	547.784864	1093.55518	0.033413	1.8303E-05	-1.0272	-0.00056266	-0.99374	-0.00054436	547.7842981937149	83.901	0.77396	83.762	83.506	84.28	-0.13816					55	17	4	0	0	0	0.36105	1	10144	10144		68.485	5.1784	1	666100			51625	5048	36005	36056	56917	56917					0.012139797818008446
MLDYERLQRA	10	Unmodified	_MLDYERLQRA_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENST00000487091.1_1_7:73790414-73795297:+|nuORF	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.28271484375	3	432.223928	1293.64996	-0.29096	-0.00012576	-0.64411	-0.0002784	-0.93507	-0.00040416	432.22363247047605	51.998	0.41552	51.85	51.642	52.057	-0.14735					19	11	2	0	0	0	0.03519	1	5531	5531		27.047	0	1	147340			51626	2807	36006	36057	56918	56918					0.014876295773319725
MLEARSTTK	9	Unmodified	_MLEARSTTK_					0	0	0			REV__ENST00000490942.1_1_7:23561999-23571439:-|nuORF	REV__ENST00000490942.1_1_7:23561999-23571439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7811279296875	2	518.776416	1035.53828	-1.4356	-0.00074477	-2.2295	-0.0011566	-3.6651	-0.0019014	518.7752559360856	44.106	0.58097	44.106	43.836	44.417	0					35	16	3	0	0	0	0.024477	1	4232	4232		14.865	8.1293	1	1047900	+		51627	33715	36007	36058	56919	56919					0.021931952202066896
MLEGDVLLAPG	11	Unmodified	_MLEGDVLLAPG_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76423133-76435249:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8265991210938	2	557.794275	1113.574	-0.32955	-0.00018382	3.3512	0.0018693	3.0217	0.0016855	558.2974054532137	102.48	0.60155	102.49	102.07	102.67	0.0073471					12	7	2	0	0	0	0.024766	1	13045	13045		35.618	0	1	37865			51628	9658	36008	36059	56920	56920					0.02175232677200256
MLEIDSGIIY	10	Unmodified	_MLEIDSGIIY_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2939453125	2	577.294107	1152.57366	0.56896	0.00032846	-0.65406	-0.00037759	-0.085099	-4.9127E-05	577.2934587649324	82.967	3.0817	82.747	81.701	84.783	-0.22015					149	71	3	0	0	0	0.67706	1	9987	9987		68.787	0	1	613750	+		51629	20707	36009	36060	56921	56921					0.003478129573750266
MLEITKDEI	9	Unmodified	_MLEITKDEI_					0	0	0			REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2864379882812	2	546.286282	1090.55801	-1.2501	-0.00068292	1.1543	0.00063059	-0.095796	-5.2332E-05	546.2866701758142	84.287	0.76054	84.314	83.945	84.705	0.026558					48	17	4	0	0	0	0.071379	1	10472	10472		120.87	0	1	2188200	+		51630	20482	36010	36061	56922	56922					0.01635526440304602
MLEITKDEI	9	Unmodified	_MLEITKDEI_					0	0	0			REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2867431640625	2	546.286282	1090.55801	0.53278	0.00029105	-0.80458	-0.00043953	-0.2718	-0.00014848	546.2856507694288	84.322	0.85602	84.163	83.801	84.657	-0.15869					43	19	3	0	0	0	0.1158	1	10198	10198		107.01	5.4068	1	1226100	+		51631	20482	36010	36061	56923	56923					0.01635526440304602
MLEKLLQGQAP	11	Unmodified	_MLEKLLQGQAP_					0	0	0			REV__nc|ENSG00000167588|P21695-2|GPD1	REV__nc|ENSG00000167588|P21695-2|GPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.8863525390625	3	409.897041	1226.66929	0.4783	0.00019605	-0.95091	-0.00038977	-0.4726	-0.00019372	409.8967887326873	34.685	0.61195	34.685	34.444	35.056	0					34	15	3	0	0	0	0.024466	1	2622	2622		68.626	33.474	1	78380	+		51632	26157	36011	36062	56924	56924					0.06502585868247479
MLEKLNGW	8	Unmodified	_MLEKLNGW_					0	0	0			REV__ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant	REV__ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.78057861328125	2	495.757495	989.500437	0.046256	2.2932E-05	-3.5966	-0.001783	-3.5504	-0.0017601	495.7556159184172	88.9	0.62569	88.762	88.482	89.107	-0.13762					36	14	4	0	0	0	0.027866	1	10876	10876		57.811	0	1	303780	+		51633	19057	36012	36063	56925	56925					0.00526729025386885
MLEKLPKLN	9	Unmodified	_MLEKLPKLN_					0	0	0		ENSG00000141068|ENST00000644974|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5-2|KSR1	ENSG00000141068|ENST00000644974|KSR1	ENSG00000141068|ENST00000644974|KSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2803955078125	2	543.323002	1084.63145	-0.49409	-0.00026845	-0.58541	-0.00031807	-1.0795	-0.00058652	543.3227478855289	62.127	0.19467	61.913	61.737	61.932	-0.21375					6	4	2	0	0	0	0.024487	1	6977	6977		17.365	0	1	70353			51634	5468	36013	36064	56926	56926					0.09252119673442394
MLELLEGRL	9	Unmodified	_MLELLEGRL_					0	0	0			REV__ENSG00000144045|ENST00000404568|DQX1	REV__ENSG00000144045|ENST00000404568|DQX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.30517578125	2	537.30481	1072.59507	-0.036349	-1.9531E-05	0.20044	0.0001077	0.16409	8.8167E-05	537.3047418538617	73	1.836	72.718	71.731	73.567	-0.28124					58	31	3	0	0	0	0.22902	1	8843	8843		85.161	2.4103	1	1423200	+		51635	24310	36014	36065	56927	56927					0.061672427767234694
MLELYRRG	8	Unmodified	_MLELYRRG_					0	0	0			REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1	REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.8204956054688	2	519.281669	1036.54878	0.50626	0.00026289	1.0314	0.00053558	1.5377	0.00079847	519.784225783664	80.736	0.40265	80.529	80.385	80.787	-0.20633					14	9	2	0	0	0	0.027866	1	9718	9718		19.36	0	1	268050	+		51636	28704	36015	36066	56928	56928					0.03197222665312438
MLEMLQMYQ	9	2 Oxidation (M)	_M(Oxidation (M))LEM(Oxidation (M))LQMYQ_		M(1)LEM(1)LQMYQ		M(45)LEM(39)LQM(-39)YQ	0	0	2		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	609.764404296875	2	609.763803	1217.51305	-1.2333	-0.00075204	1.5899	0.00096943	0.35652	0.00021739	609.7646731459722	32.921	0.76991	32.69	32.462	33.232	-0.23107					45	18	4	0	0	0	0.43973	1	2311	2311		63.306	10.37	3	1051500			51637	18387	36016	36067	56929	56929		576;577			-0.08700363688876678
MLEMLQMYQ	9	2 Oxidation (M)	_M(Oxidation (M))LEM(Oxidation (M))LQMYQ_		M(1)LEM(1)LQMYQ		M(45)LEM(39)LQM(-39)YQ	0	0	2		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	609.7642822265625	2	609.763803	1217.51305	-0.23115	-0.00014095	0.62608	0.00038176	0.39493	0.00024082	609.7640365328845	32.999	0.64249	32.799	32.528	33.171	-0.20019					42	15	4	0	0	0	0.43973	1	2321	2321		63.306	17.334	3	1193500			51638	18387	36016	36067	56930	56930		576;577			-0.08700363688876678
MLENFTFR	8	Unmodified	_MLENFTFR_					0	0	0		nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	nc|ENSG00000127334|Q92630-2|DYRK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2818603515625	2	529.260402	1056.50625	0.31456	0.00016648	0.9788	0.00051804	1.2934	0.00068453	529.7627376701035	83.772	0.51388	83.633	83.506	84.02	-0.13861					16	11	2	0	0	0	0.027866	1	10101	10101		45.972	0	1	49782			51639	4235	36017	36068	56931	56931					-0.019741724629511737
MLENYSNFVSP	11	Unmodified	_MLENYSNFVSP_					0	0	0		ENST00000590008.5_1_19:38161161-38167293:-|nuORF	ENST00000590008.5_1_19:38161161-38167293:-|nuORF	ENST00000590008.5_1_19:38161161-38167293:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7799987792969	3	434.200789	1299.58054	-0.51325	-0.00022285	3.257	0.0014142	2.7438	0.0011914	434.202311762613	38.954	0.6927	38.731	38.457	39.149	-0.22311					44	18	4	0	0	0	0.024734	1	3289	3289		16.53	0	1	624830			51640	17319	36018	36069	56932	56932					-0.057268741620646324
MLEPDQLW	8	Unmodified	_MLEPDQLW_					0	0	0			REV__ENSG00000154124|ENST00000284274|OTULIN	REV__ENSG00000154124|ENST00000284274|OTULIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2803955078125	2	516.24696	1030.47937	0.055902	2.8859E-05	-3.4933	-0.0018034	-3.4374	-0.0017745	516.2461431320955	55.237	0.17606	55.031	54.904	55.08	-0.20613					6	4	2	0	0	0	0.027866	1	5891	5891		76.847	16.728	1	82635	+		51641	24936	36019	36070	56933	56933					-0.03465281074136328
MLEPDQLW	8	Unmodified	_MLEPDQLW_					0	0	0			REV__ENSG00000154124|ENST00000284274|OTULIN	REV__ENSG00000154124|ENST00000284274|OTULIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2799072265625	2	516.24696	1030.47937	-0.66048	-0.00034097	-2.3251	-0.0012003	-2.9856	-0.0015413	516.2437948536564	55.55	0.221	55.334	55.268	55.489	-0.21551					7	5	2	0	0	0	0.027866	1	5950	5950		101.21	23.894	1	56879	+		51642	24936	36019	36070	56934	56934					-0.03465281074136328
MLESPRPNFSL	11	Unmodified	_MLESPRPNFSL_					0	0	0		ENST00000507209.5_1_4:187131803-187131959:+|nuORF	ENST00000507209.5_1_4:187131803-187131959:+|nuORF	ENST00000507209.5_1_4:187131803-187131959:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	430.8860168457031	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.255	1	22.18	21.68	22.68	-0.075296								0	0	0	0.91027	1	753	753		52.167	3.5656	1				51643	15755	36020	36071	56935	56935					0.010571113458127002
MLETEADNT	9	Unmodified	_MLETEADNT_					0	0	0			REV__ENSG00000275718|ENST00000617897|CCL15	REV__ENSG00000275718|ENST00000617897|CCL15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2848205566406	2	512.218597	1022.42264	0.052116	2.6695E-05	-1.6551	-0.00084776	-1.603	-0.00082106	512.217743641779	86.944	0.37737	86.944	86.775	87.152	0					13	8	2	0	0	0	0.02435	1	10932	10932		42.396	0	1	69260	+		51644	29193	36021	36072	56936	56936					-0.08767373421312641
MLETLHSFS	9	Unmodified	_MLETLHSFS_					0	0	0			REV__nc|ENSG00000198182|Q96SK3-3|ZNF607	REV__nc|ENSG00000198182|Q96SK3-3|ZNF607	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2823486328125	2	532.757692	1063.50083	-1.052	-0.00056047	-3.4213	-0.0018227	-4.4733	-0.0023832	532.7557624908712	38.647	3.1003	38.647	36.887	39.988	0					131	86	2	0	0	0	0.024523	1	3293	3293		37.159	12.64	1	536230	+		51645	28395	36022	36073	56937	56937					-0.028378960454119806
MLETLHSFS	9	Unmodified	_MLETLHSFS_					0	0	0			REV__nc|ENSG00000198182|Q96SK3-3|ZNF607	REV__nc|ENSG00000198182|Q96SK3-3|ZNF607	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.757692	1063.50083	-1.0431	-0.00055573	-3.3545	-0.0017871	-4.3976	-0.0023428	532.7558138355696	38.689	2.1169	38.59	37.727	39.844	-0.098755	-0.12344	-0.00010657	NaN	45.952	111	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485020	+		51646	28395	36022	36073							-0.028378960454119806
MLETLPFEME	10	Unmodified	_MLETLPFEME_					0	0	0		ENST00000462591.1_1_1:114440257-114440542:-|nuORF	ENST00000462591.1_1_1:114440257-114440542:-|nuORF	ENST00000462591.1_1_1:114440257-114440542:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	620.283447265625	2	620.285425	1238.5563	-0.8186	-0.00050776	-2.1732	-0.001348	-2.9918	-0.0018558	620.2838578535209	80.574	0.73068	80.574	80.247	80.978	0					42	17	3	0	0	0	0.941	1	10014	10014		51.335	3.3759	1	1037500			51647	14711	36023	36074	56938	56938					-0.053438506399743346
MLFFKQIN	8	Unmodified	_MLFFKQIN_					0	0	0			REV__ENST00000326361.7_2_3:179051926-179052001:+|nuORF	REV__ENST00000326361.7_2_3:179051926-179052001:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7844848632812	2	520.783513	1039.55247	0.26776	0.00013944	1.1291	0.00058803	1.3969	0.00072748	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	1.0572	1	13684	13684		28.254	1.4582	1	6875800	+		51648	30404	36024	36075	56939	56939					0.03427892439162861
MLFFKQIN	8	Unmodified	_MLFFKQIN_					0	0	0			REV__ENST00000326361.7_2_3:179051926-179052001:+|nuORF	REV__ENST00000326361.7_2_3:179051926-179052001:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7838134765625	2	520.783513	1039.55247	-0.15368	-8.0034E-05	1.0932	0.00056934	0.93956	0.0004893	520.7842808376299	104.04	1.3429	104.04	103.75	105.09	0.0031357					61	37	3	0	0	0	1.0017	1	13312	13312		37.028	3.5129	1	243720	+		51649	30404	36024	36075	56940	56940					0.03427892439162861
MLFGGVPKT	9	Unmodified	_MLFGGVPKT_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.2538757324219	2	475.262413	948.510274	0.66006	0.0003137	3.3197	0.0015777	3.9798	0.0018914	475.2639818119894	27.04	0.47352	27.04	26.741	27.215	0					14	11	2	0	0	0	0.024487	1	1406	1406		17.365	0	1	55660			51650	1574	36025	36076	56941	56941					0.033959170307753084
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.7779541015625	2	513.793881	1025.57321	-0.30615	-0.0001573	0.5224	0.00026841	0.21625	0.00011111	513.793507371644	75.561	0.91521	75.288	74.934	75.849	-0.27266					62	22	3	0	0	0	0.023092	1	8943	8943		72.62	42.778	1	971030			51651	2394	36026	36077	56942	56942					0.06144482818808683
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.793881	1025.57321	-1.3159	-0.0006761	0.8873	0.00045589	-0.4286	-0.00022021	513.7942860922476	75.371	1.0349	75.371	75.036	76.071	0	0.043458	0.00056744	NaN	85.909	41	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330800			51652	2394	36026	36077							0.06144482818808683
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.793881	1025.57321	-0.46413	-0.00023847	0.14537	7.4688E-05	-0.31876	-0.00016378	513.7939622039642	75.592	0.95038	75.348	75.037	75.987	-0.24455	0.019926	-0.00019497	NaN	85.909	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1440500			51653	2394	36026	36077							0.06144482818808683
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.793881	1025.57321	-0.10838	-5.5685E-05	-0.12502	-6.4234E-05	-0.2334	-0.00011992	513.7937251987302	75.449	0.88151	75.459	75.132	76.013	0.010368	0.13101	-0.00047281	NaN	85.909	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1220500			51654	2394	36026	36077							0.06144482818808683
MLFKVAVN	8	Unmodified	_MLFKVAVN_					0	0	0			REV__ENSG00000169410|ENST00000618819|PTPN9	REV__ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.2644348144531	2	461.264956	920.515359	-1.6026	-0.00073924	1.8565	0.00085635	0.25388	0.00011711	461.2655843697249	92.32	2.1234	92.177	91.617	93.74	-0.14356					89	49	3	0	0	0	1.0574	1	11325	11325		24.203	0	1	1434600	+		51655	26365	36027	36078	56943	56943					0.051922208933888214
MLFKVAVN	8	Unmodified	_MLFKVAVN_					0	0	0			REV__ENSG00000169410|ENST00000618819|PTPN9	REV__ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.26519775390625	2	461.264956	920.515359	-0.21096	-9.7307E-05	0.42961	0.00019816	0.21865	0.00010086	461.2649360840451	92.324	2.299	92.201	91.674	93.973	-0.12242					98	53	3	0	0	0	1.0574	1	11341	11341		25.45	0	1	1283700	+		51656	26365	36027	36078	56944	56944					0.051922208933888214
MLFLHVKR	8	Unmodified	_MLFLHVKR_					0	0	0			REV__ENST00000420329.6_1_15:91185965-91186208:+|nuORF	REV__ENST00000420329.6_1_15:91185965-91186208:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3029174804688	2	522.312772	1042.61099	-0.19815	-0.00010349	2.2004	0.0011493	2.0023	0.0010458	522.3138777599054	19.958	0.62605	19.79	19.62	20.246	-0.16744					22	12	3	0	0	0	0.027866	1	487	487		20.482	9.6163	1	140220	+		51657	32161	36028	36079	56945	56945					0.09138993804276652
MLFLPNPQ	8	Unmodified	_MLFLPNPQ_					0	0	0		nc|ENSG00000205683|Q92784-3|DPF3	nc|ENSG00000205683|Q92784-3|DPF3	nc|ENSG00000205683|Q92784-3|DPF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.8163146972656	2	480.254588	958.494624	-0.1692	-8.126E-05	2.6855	0.0012897	2.5163	0.0012084	480.25586924030716	53.515	0.54213	53.379	53.208	53.75	-0.13617					33	15	3	0	0	0	0.027866	1	5640	5640		23.042	0	1	1605800			51658	18672	36029	36080	56946	56946					0.013716305137336349
MLFLVSIN	8	Oxidation (M)	_M(Oxidation (M))LFLVSIN_		M(1)LFLVSIN		M(77)LFLVSIN	0	0	1			REV__ENST00000477672.1_1_2:187351003-187359956:+|nuORF	REV__ENST00000477672.1_1_2:187351003-187359956:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.76214599609375	2	476.762246	951.50994	1.5106	0.00072018	-1.4551	-0.00069375	0.055441	2.6432E-05	476.7614084089925	63.947	1.984	63.992	63.583	65.567	0.045502					151	54	5	0	0	0	0.59392	1	7497	7497		76.847	19.035	1	21920000	+		51659	33341	36030	36081	56947	56947		912			0.03224497310930019
MLFPGSIAL	9	Oxidation (M)	_M(Oxidation (M))LFPGSIAL_		M(1)LFPGSIAL		M(71)LFPGSIAL	0	0	1		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7622985839844	2	482.762246	963.50994	0.74709	0.00036067	-0.58802	-0.00028387	0.15907	7.6792E-05	482.761793749717	86.248	0.81953	86.248	85.913	86.733	0					49	18	4	0	0	0	0.33184	1	10823	10823		71.378	15.874	1	966530			51660	2319	36031	36082	56948	56948		91			0.026724973109139682
MLFPGSIAL	9	Oxidation (M)	_M(Oxidation (M))LFPGSIAL_		M(1)LFPGSIAL		M(71)LFPGSIAL	0	0	1		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.76239013671875	2	482.762246	963.50994	-0.034442	-1.6627E-05	0.10753	5.1913E-05	0.073091	3.5286E-05	482.762153267375	86.263	0.8212	86.218	85.861	86.683	-0.045097					46	18	3	0	0	0	0.33184	1	10788	10788		71.378	21.353	1	826800			51661	2319	36031	36082	56949	56949		91			0.026724973109139682
MLFPGSIAL	9	Oxidation (M)	_M(Oxidation (M))LFPGSIAL_		M(1)LFPGSIAL		M(80)LFPGSIAL	0	0	1		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7624816894531	2	482.762246	963.50994	-0.91501	-0.00044173	0.91788	0.00044312	0.0028709	1.386E-06	482.7625695429954	86.185	0.81995	86.209	85.902	86.722	0.023666					49	18	3	0	0	0	0.26797	1	10745	10745		79.939	13.51	1	928170			51662	2319	36031	36082	56950	56950		91			0.026724973109139682
MLFPGSIAL	9	Oxidation (M)	_M(Oxidation (M))LFPGSIAL_		M(1)LFPGSIAL		M(48)LFPGSIAL	0	0	1		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.762451171875	2	482.762246	963.50994	0.4426	0.00021367	-0.17638	-8.5152E-05	0.26622	0.00012852	482.761939462758	86.207	0.78683	86.02	85.729	86.516	-0.18696					50	17	4	0	0	0	0.67308	1	10456	10456		47.916	7.343	1	679060			51663	2319	36031	36082	56951	56951		91			0.026724973109139682
MLFPGSIAL	9	Oxidation (M)	_M(Oxidation (M))LFPGSIAL_		M(1)LFPGSIAL		M(60)LFPGSIAL	0	0	1		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.7623291015625	2	482.762246	963.50994	0.12105	5.8439E-05	0.10115	4.8833E-05	0.2222	0.00010727	482.76214071742976	87.716	2.8054	87.537	86.393	89.198	-0.17875					142	67	3	0	0	0	0.4855	1	10661	10661		60.294	7.9948	1	829440			51664	2319	36031	36082	56952	56952		91			0.026724973109139682
MLFPGSIAL	9	Oxidation (M)	_M(Oxidation (M))LFPGSIAL_		M(1)LFPGSIAL		M(92)LFPGSIAL	0	0	1		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.76214599609375	2	482.762246	963.50994	0.37097	0.00017909	-0.1437	-6.9372E-05	0.22727	0.00010972	482.7620442262988	87.344	2.5337	87.208	86.413	88.947	-0.13613					133	60	3	0	0	0	0.18276	1	10668	10668		92.191	20.895	1	754440			51665	2319	36031	36082	56953	56953		91			0.026724973109139682
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.76416015625	2	474.764789	947.515025	0.15442	7.3312E-05	-0.96724	-0.00045921	-0.81283	-0.0003859	474.7641467360941	92.108	1.0636	92.1	91.752	92.815	-0.0082932					56	25	3	0	0	0	0.088511	1	11647	11647		114.59	43.208	1	1329200			51666	2319	36031	36083	56954	56954					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.764404296875	2	474.764789	947.515025	0.61083	0.00029	-1.4474	-0.00068719	-0.8366	-0.00039719	474.7639273810546	92.117	1.2685	92.126	91.788	93.057	0.009407					71	30	3	0	0	0	0.14199	1	11594	11594		101.21	17.924	1	1474000			51667	2319	36031	36083	56955	56955					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.7648620605469	2	474.764789	947.515025	-1.2674	-0.0006017	0.97586	0.0004633	-0.2915	-0.00013839	474.76515710850464	92.045	1.6442	91.901	91.444	93.088	-0.14356					89	38	4	0	0	0	0.20304	2	11273	11273;11284		88.643	17.265	1	1300500			51668	2319	36031	36083	56956;56957	56956					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MSMS	OPSCC_40_ClassI_Rep-2	5	474.7647399902344	2	474.764789	947.515025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.941	1	91.819	91.319	92.319	-0.12257								0	0	0	0.067765	1	11293	11293		101.21	26.695	1				51669	2319	36031	36083	56958	56958					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MSMS	OPSCC_40_ClassI_Rep-2	5	474.7649841308594	2	474.764789	947.515025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.008	1	91.886	91.386	92.386	-0.12242								0	0	0	0.021408	1	11302	11302		128.82	40.173	1				51670	2319	36031	36083	56959	56959					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MSMS	OPSCC_40_ClassI_Rep-2	5	474.76446533203125	2	474.764789	947.515025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.103	1	91.98	91.48	92.48	-0.12242								0	0	0	0.067765	1	11315	11315		101.21	17.924	1				51671	2319	36031	36083	56960	56960					0.03916801173522799
MLFPGSIAL	9	Unmodified	_MLFPGSIAL_					0	0	0		ENSG00000101367|ENST00000375571|MAPRE1;MAPRE1|p.Y119*|1|0.12|ENSG00000101367|chr20:32836721-32836722|TA/-|frameshift_variant	ENSG00000101367|ENST00000375571|MAPRE1	ENSG00000101367|ENST00000375571|MAPRE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.76483154296875	2	474.764789	947.515025	0.096758	4.5937E-05	-0.3667	-0.00017409	-0.26994	-0.00012816	474.76443398020587	92.087	1.8692	91.945	91.529	93.398	-0.14131					98	43	4	0	0	0	0.088511	3	11289	11277;11289;11299		114.59	31.299	1	1566400			51672	2319	36031	36083	56961;56962;56963	56962					0.03916801173522799
MLFSSGVFW	9	Unmodified	_MLFSSGVFW_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1;ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2971801757812	2	537.259871	1072.50519	-1.0036	-0.00053918	2.6349	0.0014156	1.6313	0.00087644	537.261122966491	57.382	0.85937	57.148	56.843	57.702	-0.23363					56	22	3	0	0	0	0.024535	1	6226	6226		25.45	3.7478	1	3253400			51673	4046;160	36032	36084	56964	56964					-0.02816386831818818
MLFYLFPD	8	Unmodified	_MLFYLFPD_					0	0	0			REV__nc|ENSG00000164220|O00254-2|F2RL2	REV__nc|ENSG00000164220|O00254-2|F2RL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2967529296875	2	523.256797	1044.49904	-0.41835	-0.0002189	4.1855	0.0021901	3.7672	0.0019712	523.2593848463388	51.584	0.13221	51.584	51.501	51.633	0					5	3	2	0	0	0	0.027866	1	5486	5486		26.796	0	1	77817	+		51674	25719	36033	36085	56965	56965					-0.02142905063374201
MLFYLHICY	9	Unmodified	_MLFYLHICY_					0	0	0		ENST00000507233.1_1_5:37342606-37350289:-|nuORF	ENST00000507233.1_1_5:37342606-37350289:-|nuORF	ENST00000507233.1_1_5:37342606-37350289:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.55413818359375	3	401.529413	1201.56641	0.99511	0.00039957	2.3338	0.0009371	3.3289	0.0013367	401.530260876424	27.062	0.46804	27.062	26.783	27.251	0					22	11	3	0	0	0	0.024523	1	1400	1400		10.265	0	1	225230			51675	15757	36034	36086	56966	56966					-0.026311981240496607
MLFYTLITAF	10	Unmodified	_MLFYTLITAF_					0	0	0		ENSG00000134259|ENST00000369512|NGF	ENSG00000134259|ENST00000369512|NGF	ENSG00000134259|ENST00000369512|NGF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.2322998046875	3	407.219233	1218.63587	1.7839	0.00072644	-1.3442	-0.0005474	0.43965	0.00017903	407.2186120308701	43.253	0.58249	43.284	43.046	43.629	0.030827					38	15	4	0	0	0	0.03519	1	4004	4004		41.427	21.43	1	938110			51676	4773	36035	36087	56967	56967					0.03529584096349936
MLGDHIVLD	9	Unmodified	_MLGDHIVLD_					0	0	0		ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	ENSG00000172716|ENST00000685675|SLFN11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.8248596191406	2	506.760235	1011.50592	-1.1197	-0.0005674	0.45616	0.00023116	-0.6635	-0.00033624	507.2623126576027	80.347	0.54436	80.196	79.884	80.428	-0.15168					20	12	2	0	0	0	0.024381	1	9910	9910		37.159	7.3176	1	73310			51677	8297	36036	36088	56968	56968					0.0006240781719952793
MLGFAVPAR	9	Unmodified	_MLGFAVPAR_					0	0	0			REV__ENST00000354955.4_1_1:203311290-203311464:-|nuORF	REV__ENST00000354955.4_1_1:203311290-203311464:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.77911376953125	2	481.26803	960.521507	-0.63148	-0.00030391	-0.088137	-4.2417E-05	-0.71962	-0.00034633	481.2680191642317	60.663	0.14652	60.663	60.546	60.692	0					5	3	2	0	0	0	0.024354	1	6974	6974		38.806	1.647	1	71551	+		51678	30767	36037	36089	56969	56969					0.03966739124916785
MLGFAVPAR	9	Unmodified	_MLGFAVPAR_					0	0	0			REV__ENST00000354955.4_1_1:203311290-203311464:-|nuORF	REV__ENST00000354955.4_1_1:203311290-203311464:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.26803	960.521507	-0.63436	-0.0003053	6.9439	0.0033419	6.3096	0.0030366	481.27077775415734	60.923	0.18734	60.994	60.871	61.058	0.071125	0.16567	0.0050806	NaN	10.866	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59810	+		51679	30767	36037	36089							0.03966739124916785
MLGHNIQT	8	Unmodified	_MLGHNIQT_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.24609375	2	457.231645	912.448736	-0.48723	-0.00022278	-3.2164	-0.0014707	-3.7037	-0.0016934	457.2300709777717	42.128	0.46011	41.896	41.695	42.155	-0.23186					27	12	3	0	0	0	0.027866	1	3778	3778		29.15	9.7896	1	381040	+		51680	28263;19723	36038	36090	56970	56970					-0.010990146685230684
MLGHNIQT	8	Unmodified	_MLGHNIQT_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.231645	912.448736	0.29207	0.00013355	-4.79	-0.0021901	-4.4979	-0.0020566	457.22868132681754	41.581	0.20817	41.604	41.498	41.706	0.023006	-0.16617	-0.0011233	NaN	45.952	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34388	+		51681	28263;19723	36038	36090							-0.010990146685230684
MLGILHDAV	9	Unmodified	_MLGILHDAV_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7982177734375	2	484.76532	967.516088	1.1317	0.00054863	-1.777	-0.00086143	-0.64526	-0.0003128	484.7642480262982	59.662	0.69537	59.662	59.37	60.066	0					35	18	3	0	0	0	0.024386	1	6778	6778		25.45	0	1	1150700			51682	3667	36039	36091	56971	56971					0.031030155424332406
MLGILHDAV	9	Unmodified	_MLGILHDAV_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.76532	967.516088	-0.17341	-8.4065E-05	-0.12606	-6.111E-05	-0.29948	-0.00014518	484.7651318674066	59.884	0.55336	59.684	59.5	60.053	-0.20016	0.023206	0.00095538	NaN	31.955	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1063200			51683	3667	36039	36091							0.031030155424332406
MLGILHDAV	9	Unmodified	_MLGILHDAV_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.76532	967.516088	-0.39257	-0.00019031	-0.75424	-0.00036563	-1.1468	-0.00055594	484.7646208069963	59.576	0.85674	59.662	59.277	60.134	0.085682	0.00076575	0.00034634	NaN	31.955	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	855160			51684	3667	36039	36091							0.031030155424332406
MLGILHDAV	9	Unmodified	_MLGILHDAV_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.76532	967.516088	1.2996	0.00062999	-1.8376	-0.00089078	-0.53798	-0.00026079	484.7643827829667	59.84	0.30384	59.642	59.499	59.802	-0.19742	-0.018823	-0.00070396	NaN	31.955	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127560			51685	3667	36039	36091							0.031030155424332406
MLGILHDAV	9	Unmodified	_MLGILHDAV_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.76532	967.516088	0.44814	0.00021724	-2.7595	-0.0013377	-2.3113	-0.0011204	484.76449915276925	59.824	0.37046	59.648	59.478	59.849	-0.1761	-0.013384	-0.0015978	NaN	31.955	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109970			51686	3667	36039	36091							0.031030155424332406
MLGILHDAV	9	Unmodified	_MLGILHDAV_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000525408.1_1_11:118390286-118392884:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.76532	967.516088	0.16249	7.877E-05	-1.7994	-0.00087228	-1.6369	-0.00079351	484.7647113357922	59.917	0.26609	59.668	59.533	59.8	-0.24842	0.0072234	-0.00066696	NaN	31.955	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110140			51687	3667	36039	36091							0.031030155424332406
MLGKILSDN	9	Unmodified	_MLGKILSDN_					0	0	0		nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7873229980469	2	495.76806	989.521567	-0.098718	-4.8941E-05	-3.3796	-0.0016755	-3.4783	-0.0017244	495.7663281026165	55.626	1.009	55.47	55.093	56.102	-0.15601					47	27	2	0	0	0	0.024427	1	6098	6098		42.396	5.9494	1	696090			51688	5780	36040	36092	56972	56972					0.026386943342572522
MLGKILSDN	9	Unmodified	_MLGKILSDN_					0	0	0		nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.76806	989.521567	0.95174	0.00047184	-4.4291	-0.0021958	-3.4774	-0.001724	495.7658465393799	55.432	0.99192	55.432	55.182	56.174	0	-0.044378	-0.00099315	NaN	26.693	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	725730			51689	5780	36040	36092							0.026386943342572522
MLGKILSDN	9	Unmodified	_MLGKILSDN_					0	0	0		nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.76806	989.521567	-0.85696	-0.00042485	-2.7453	-0.001361	-3.6022	-0.0017859	495.76666928413454	55.428	1.2766	55.526	55.083	56.359	0.098011	0.050474	0.00067644	NaN	26.693	58	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627170			51690	5780	36040	36092							0.026386943342572522
MLGLLVQFC	9	Unmodified	_MLGLLVQFC_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2709350585938	2	512.271924	1022.52929	0.023925	1.2256E-05	-1.7878	-0.00091584	-1.7639	-0.00090358	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	0.88411	1	13621	13621		33.516	0	1	6386000			51691	1896	36041	36093	56973	56973					0.01893130330176973
MLGLSIILN	9	Unmodified	_MLGLSIILN_					0	0	0		ENST00000379953.6_1_6:6649869-6654873:+|nuORF	ENST00000379953.6_1_6:6649869-6654873:+|nuORF	ENST00000379953.6_1_6:6649869-6654873:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.29388427734375	2	487.291171	972.567789	-0.23305	-0.00011356	3.2904	0.0016034	3.0573	0.0014898	487.292578243981	89.93	1.0289	89.944	89.674	90.702	0.013443					74	24	4	0	0	0	0.85329	1	11305	11305		35.618	1.4457	1	3269400			51692	13292	36042	36094	56974	56974					0.08040759236348549
MLGLTSHEA	9	Unmodified	_MLGLTSHEA_					0	0	0		nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	nc|ENSG00000114127|Q8IZH2-3|XRN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7353820800781	2	479.73676	957.458967	0.039716	1.9053E-05	-3.7179	-0.0017836	-3.6782	-0.0017646	479.7349833778638	59.944	2.2815	59.744	59.356	61.638	-0.20016					157	60	4	0	0	0	0.36105	1	6806	6806		68.485	2.6815	1	52328000			51693	3346	36043	36095	56975	56975					-0.021464517339381928
MLGMHKPAF	9	Unmodified	_MLGMHKPAF_					0	0	0			REV__nc|ENSG00000085415|Q96EE3|SEH1L	REV__nc|ENSG00000085415|Q96EE3|SEH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.813720703125	2	516.26189	1030.50923	-2.2949	-0.0011848	1.5079	0.00077845	-0.78705	-0.00040632	516.2620824037272	60.503	0.67588	60.582	60.203	60.879	0.078884					45	17	3	0	0	0	0.024487	1	6826	6826		24.203	9.3379	1	394550	+		51694	20749	36044	36096	56976	56976					-0.004806206097782706
MLGPRKHFAR	10	Unmodified	_MLGPRKHFAR_					0	0	0			REV__nc|ENSG00000167554|Q8N9Z0-2|ZNF610	REV__nc|ENSG00000167554|Q8N9Z0-2|ZNF610	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.21484375	3	404.897598	1211.67097	1.7307	0.00070077	3.9141	0.0015848	5.6448	0.0022856	405.23365342464865	28.31	0.5342	28.391	28.208	28.742	0.080811					28	12	3	0	0	0	0.03519	1	1574	1574		27.047	3.5246	1	149600	+		51695	26154	36045	36097	56977	56977					0.073596844675194
MLGPSEETAP	10	Unmodified	_MLGPSEETAP_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7349243164062	2	516.239332	1030.46411	-0.52785	-0.0002725	-0.064043	-3.3062E-05	-0.5919	-0.00030556	516.2391049147027	43.536	1.9548	43.299	42.452	44.407	-0.23737					73	52	2	0	0	0	0.03519	1	4041	4041		42.396	0	1	528890			51696	2969	36046	36098	56978	56978					-0.0499019266196683
MLGVILREF	9	Unmodified	_MLGVILREF_					0	0	0			REV__nc|ENSG00000197043|P08133-2|ANXA6	REV__nc|ENSG00000197043|P08133-2|ANXA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7933349609375	2	539.309895	1076.60524	-0.48291	-0.00026044	3.8452	0.0020737	3.3623	0.0018133	539.3121600095566	77.716	0.73604	77.716	77.426	78.162	0					40	17	3	0	0	0	0.024477	1	9645	9645		27.882	4.8398	1	464420	+		51697	28254	36047	36099	56979	56979					0.06999850501961191
MLGVRKHK	8	Unmodified	_MLGVRKHK_					0	0	0		ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7981872558594	2	484.794746	967.57494	1.4646	0.00071001	4.3206	0.0020946	5.7851	0.0028046	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.96719	1	6758	6758		42.474	0.078325	1	119110000			51698	9686	36048	36100	56980	56980					0.08985536627437796
MLGYFSLVGL	10	Unmodified	_MLGYFSLVGL_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.294921875	2	550.296453	1098.57835	0.44977	0.00024751	-3.5997	-0.0019809	-3.1499	-0.0017334	550.2942993602397	96.051	1.3188	96.054	95.653	96.972	0.0020676					84	30	4	0	0	0	0.67706	1	12187	12187		68.787	1.2932	1	2801800			51699	2139	36049	36101	56981	56981					0.03300741890802783
MLGYIANVKV	10	Unmodified	_MLGYIANVKV_					0	0	0			REV__ENSG00000181074|ENST00000641350|OR52N4	REV__ENSG00000181074|ENST00000641350|OR52N4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7826538085938	2	554.315177	1106.6158	-0.29997	-0.00016628	-0.83513	-0.00046293	-1.1351	-0.0006292	554.3149882048092	83.085	0.68803	82.946	82.61	83.298	-0.13861					37	15	3	0	0	0	0.03519	1	9972	9972		29.15	0	1	157510	+		51700	27383	36050	36102	56982	56982					0.06675833156373301
MLGYQPHR	8	Unmodified	_MLGYQPHR_					0	0	0		ENSG00000144644|ENST00000282538|GADL1	ENSG00000144644|ENST00000282538|GADL1	ENSG00000144644|ENST00000282538|GADL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2904357910156	2	501.252911	1000.49127	0.06034	3.0245E-05	0.13845	6.9398E-05	0.19879	9.9643E-05	501.2509461061629	86.914	0.16661	86.727	86.647	86.814	-0.18696					5	3	2	0	0	0	0.027866	1	10562	10562		12.959	0	1	12692			51701	5755	36051	36103	56983	56983					-0.00895619540278858
MLHEVLEEE	9	Unmodified	_MLHEVLEEE_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.7642822265625	2	564.765714	1127.51688	-0.36088	-0.00020381	-2.3771	-0.0013425	-2.7379	-0.0015463	564.7642830202146	76.749	0.59022	76.581	76.309	76.899	-0.16854					51	13	5	0	0	0	0.55828	1	9122	9122		55.504	7.5447	1	1736200			51702	2823	36052	36104	56984	56984					-0.041782345991805414
MLHLAGAR	8	Unmodified	_MLHLAGAR_					0	0	0		ENST00000299697.11_1_16:66545117-66545318:-|nuORF	ENST00000299697.11_1_16:66545117-66545318:-|nuORF	ENST00000299697.11_1_16:66545117-66545318:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.75927734375	2	434.744722	867.474891	0.67432	0.00029316	1.5994	0.00069532	2.2737	0.00098848	434.74712347428294	86.986	0.29127	86.844	86.712	87.003	-0.14217					9	6	2	0	0	0	0.027866	1	10595	10595		13.775	0	1	52624			51703	11889	36053	36105	56985	56985					0.03585299293627031
MLHMQLKA	8	Unmodified	_MLHMQLKA_					0	0	0			REV__ENST00000354911.8_2_10:28822518-28879725:+|nuORF	REV__ENST00000354911.8_2_10:28822518-28879725:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.28204345703125	2	486.26189	970.509228	-0.29665	-0.00014425	-1.8583	-0.0009036	-2.1549	-0.0010478	486.2610744426634	89.629	0.58639	89.642	89.297	89.883	0.013435					22	13	3	0	0	0	0.027866	1	11195	11195		60.294	15.763	1	236010	+		51704	30765	36054	36106	56986	56986					0.022793793902224024
MLIAAVFY	8	Unmodified	_MLIAAVFY_					0	0	0		nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.25323486328125	2	464.254057	926.493561	0.040288	1.8704E-05	-0.76472	-0.00035502	-0.72443	-0.00033632	464.253647614494	78.531	1.9862	78.276	77.955	79.941	-0.25471					73	46	2	0	0	0	0.9599	1	9394	9394		43.626	9.4535	1	2782100			51705	1874	36055	36107	56987	56987					0.02737416144816507
MLIAAVFY	8	Unmodified	_MLIAAVFY_					0	0	0		nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.2532043457031	2	464.254057	926.493561	0.32832	0.00015242	-0.92996	-0.00043174	-0.60164	-0.00027931	464.25350960111643	78.41	1.5236	78.179	77.834	79.357	-0.23141					99	35	4	0	0	0	0.8525	1	9388	9388		54.895	16.088	1	2225500			51706	1874	36055	36107	56988	56988					0.02737416144816507
MLIAAVFY	8	Unmodified	_MLIAAVFY_					0	0	0		nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.2532958984375	2	464.254057	926.493561	-0.042548	-1.9753E-05	-0.29228	-0.00013569	-0.33482	-0.00015544	464.25367601709354	78.304	2.1582	78.148	77.49	79.648	-0.15591					136	50	5	0	0	0	0.9599	3	9357	9321;9343;9357		43.626	3.5679	1	2114300			51707	1874	36055	36107	56989;56990;56991	56991					0.02737416144816507
MLIARRHS	8	Unmodified	_MLIARRHS_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2586975097656	2	492.282003	982.549453	0.059723	2.94E-05	-3.5256	-0.0017356	-3.4659	-0.0017062	492.28015281039814	54.377	0.62424	54.132	53.891	54.515	-0.2453					33	18	2	0	0	0	0.027866	1	5749	5749		30.504	0	1	1140400	+		51708	21385	36056	36108	56992	56992					0.057480621050103764
MLIEGFNFE	9	Unmodified	_MLIEGFNFE_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.26171875	2	550.260068	1098.50558	-1.3532	-0.0007446	4.2645	0.0023466	2.9114	0.001602	550.2622884144965	91.356	1.0903	91.356	91.011	92.101	0					64	25	3	0	0	0	0.19099	1	11559	11559		90.37	10.919	1	4093800	+		51709	27757	36057	36109	56993	56993					-0.0397301190264443
MLIEGFNFE	9	Unmodified	_MLIEGFNFE_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2606811523438	2	550.260068	1098.50558	-1.4382	-0.00079136	4.4817	0.0024661	3.0436	0.0016748	550.2624641323065	91.314	1.3095	91.165	90.772	92.082	-0.1487					68	30	3	0	0	0	0.6504	1	11217	11217		49.442	1.5259	1	3445400	+		51710	27757	36057	36109	56994	56994					-0.0397301190264443
MLIELIVTR	9	Unmodified	_MLIELIVTR_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3155517578125	2	544.330827	1086.6471	-0.079904	-4.3494E-05	-3.228	-0.0017571	-3.3079	-0.0018006	544.3289823978585	86.137	0.52312	85.95	85.644	86.167	-0.18696					25	11	3	0	0	0	0.024405	1	10445	10445		35.618	8.9254	1	103050	+		51711	24671	36058	36110	56995	56995					0.10724406190502123
MLIFAGDDF	9	Unmodified	_MLIFAGDDF_					0	0	0		RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;RPF2|p.S161Vfs*20|1|0.22|ENSG00000197498|chr6:111008121-111008121|A/-|frameshift_variant;ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF	RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7442016601562	2	514.741511	1027.46847	0.68471	0.00035245	3.4369	0.0017691	4.1216	0.0021216	514.7430529878086	70.233	0.50409	69.94	69.633	70.137	-0.29291					29	13	3	0	0	0	0.70186	1	8461	8461		45.952	5.3793	1	2286000			51712	10009;14035	36059	36111	56996	56996					-0.04416683448425829
MLIFILPS	8	Unmodified	_MLIFILPS_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF;ENSG00000111371|ENST00000398637|SLC38A1;ENST00000548979.1_1_12:46591442-46591783:-|nuORF	ENSG00000134294|ENST00000256689|SLC38A2;ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.2625732421875	2	467.277532	932.540511	0.089655	4.1894E-05	-2.4715	-0.0011549	-2.3819	-0.001113	467.2763294672321	50.666	0.33018	50.486	50.317	50.647	-0.18071					14	8	2	0	0	0	0.027866	1	5133	5133		29.842	0	1	190040			51713	4778;3114	36060	36112	56997	56997					0.07154275695984325
MLIHKHPRS	9	Unmodified	_MLIHKHPRS_					0	0	0			REV__ZDBF2|p.K123_S124insHILM|1|0.15|ENSG00000204186|chr2:206304897-206304898|-/CATATTCTAATG|inframe_insertion	REV__ZDBF2|p.K123_S124insHILM|1|0.15|ENSG00000204186|chr2:206304897-206304898|-/CATATTCTAATG|inframe_insertion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.813720703125	2	559.81621	1117.61787	0.21173	0.00011853	-4.2701	-0.0023905	-4.0584	-0.0022719	559.8137100124266	76.455	1.0995	76.467	75.717	76.816	0.011635					64	27	3	0	0	0	0.53979	1	9351	9351		56.721	7.2795	1	1542400	+		51714	37794	36061	36113	56998	56998					0.06376306684865085
MLIKRPCK	8	Unmodified	_MLIKRPCK_					0	0	0		ENST00000464685.1_1_2:99785961-99787892:-|nuORF;ENST00000487588.5_1_2:99777987-99787865:-|nuORF;ENSG00000158411|ENST00000289359|MITD1	ENST00000464685.1_1_2:99785961-99787892:-|nuORF	ENST00000464685.1_1_2:99785961-99787892:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3084716796875	2	494.793358	987.572163	0.29046	0.00014372	3.6577	0.0018098	3.9482	0.0019535	494.79507968671726	69.069	0.6456	68.776	68.405	69.051	-0.29267					25	16	2	0	0	0	0.027866	1	8227	8227		44.531	17.735	1	229150			51715	6666	36062	36114	56999	56999					0.07787945178267819
MLILIREF	8	Unmodified	_MLILIREF_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2741088867188	2	517.806988	1033.59942	-0.68692	-0.00035569	-0.54198	-0.00028064	-1.2289	-0.00063633	517.8067468537042	44.712	0.79588	44.749	44.476	45.272	0.0369					52	22	3	0	0	0	0.027866	1	4301	4301		55.504	0	1	1336900			51716	3459	36063	36115	57000	57000					0.08396751990289886
MLINRAAVD	9	Unmodified	_MLINRAAVD_					0	0	0			REV__ENSG00000060140|ENST00000075503|STYK1	REV__ENSG00000060140|ENST00000075503|STYK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7785339355469	2	501.773677	1001.5328	1.3859	0.00069542	-1.2816	-0.00064309	0.10429	5.233E-05	502.2754502226801	63.735	0.57751	63.735	63.485	64.062	0					26	15	2	0	0	0	0.024381	1	7505	7505		37.159	10.363	1	153070	+		51717	20249	36064	36116	57001	57001					0.0320951642838736
MLIPELCYL	9	Unmodified	_MLIPELCYL_					0	0	0		nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	nc|ENSG00000125207|Q96J94-3|PIWIL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2703857421875	2	547.784864	1093.55518	-0.35205	-0.00019285	0.19985	0.00010947	-0.15221	-8.3376E-05	547.784616063118	39.191	0.75919	38.966	38.636	39.395	-0.2257					30	20	2	0	0	0	0.024443	1	3251	3251		26.796	0	1	363910			51718	4090	36065	36117	57002	57002					0.012139797818008446
MLISHCMPL	9	Unmodified	_MLISHCMPL_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|19|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|19|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|19|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3004760742188	2	522.755584	1043.49661	-1.2402	-0.00064834	0.72514	0.00037907	-0.51508	-0.00026926	522.7554403514833	80.222	0.75429	80.07	79.588	80.343	-0.15169					22	17	2	0	0	0	0.024354	1	9865	9865		57.811	11.859	1	114690			51719	17811	36066	36118	57003	57003					-0.02339400064329311
MLITKLPHQL	10	Unmodified	_MLITKLPHQL_					0	0	0			REV__ENST00000502584.5_1_4:77952330-77952654:+|nuORF	REV__ENST00000502584.5_1_4:77952330-77952654:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.3598022460938	2	597.357376	1192.7002	-0.034733	-2.0748E-05	1.9713	0.0011775	1.9365	0.0011568	597.3583204343577	98.637	1.8036	98.633	98.096	99.899	-0.0038834					117	41	4	0	0	0	1.1265	1	12613	12613		24.519	2.8334	1	2975900	+		51720	33935	36067	36119	57004	57004					0.11155783973163125
MLITRRGP	8	Unmodified	_MLITRRGP_					0	0	0		ENST00000372396.3_1_1:44157203-44157976:+|nuORF	ENST00000372396.3_1_1:44157203-44157976:+|nuORF	ENST00000372396.3_1_1:44157203-44157976:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2950439453125	2	472.278929	942.543305	-0.050184	-2.3701E-05	1.2314	0.00058157	1.1812	0.00055787	472.28031688704283	54.856	0.87962	54.954	54.491	55.371	0.098015					53	24	4	0	0	0	0.027866	1	5984	5984		57.811	11.045	1	892990			51721	13037	36068	36120	57005	57005					0.06973543873482413
MLIVTYSI	8	Unmodified	_MLIVTYSI_					0	0	0			REV__ENSG00000172742|ENST00000641962|OR4D9	REV__ENSG00000172742|ENST00000641962|OR4D9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.26617431640625	2	470.264622	938.514691	0.033106	1.5568E-05	-1.7565	-0.000826	-1.7234	-0.00081044	470.2637665480187	62.652	0.30938	62.431	62.237	62.547	-0.22097					15	9	2	0	0	0	1.0574	1	7050	7050		14.664	0	1	2102700	+		51722	26704	36069	36121	57006	57006					0.04297381453670823
MLKDTAAENY	10	Unmodified	_MLKDTAAENY_					0	0	0		nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2817993164062	2	578.271164	1154.52777	0.35774	0.00020687	3.5324	0.0020427	3.8902	0.0022496	578.2731144983164	50.993	0.3378	50.812	50.685	51.023	-0.18071					12	8	2	0	0	0	0.03519	1	5215	5215		27.882	0	1	267360			51723	5946	36070	36122	57007	57007					-0.04330832224900405
MLKEELRAD	9	Oxidation (M)	_M(Oxidation (M))LKEELRAD_		M(1)LKEELRAD		M(96)LKEELRAD	0	0	1			REV__ENSG00000149782|ENST00000279230|PLCB3	REV__ENSG00000149782|ENST00000279230|PLCB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.7855224609375	2	560.786981	1119.55941	-0.19604	-0.00010994	-2.7683	-0.0015524	-2.9643	-0.0016624	560.7852716826169	67.826	0.73624	67.588	67.334	68.07	-0.23814					50	17	4	0	0	0	0.16539	1	7824	7824		96.034	13.283	1	2733900	+		51724	24700	36071	36123	57008	57008		731			0.004411605290670195
MLKERKGKP	9	Unmodified	_MLKERKGKP_					0	0	0			REV__ENST00000569492.1_1_16:35037299-35037500:-|nuORF	REV__ENST00000569492.1_1_16:35037299-35037500:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.2910766601562	2	543.826243	1085.63793	-0.58711	-0.00031929	-0.056014	-3.0462E-05	-0.64312	-0.00034975	544.326297522683	54.121	0.30406	53.974	53.855	54.159	-0.14723					11	8	2	0	0	0	0.024374	1	5896	5896		49.442	10.189	1	130190	+		51725	35371	36072	36124	57009	57009					0.09854057624806956
MLKGMRRSP	9	Unmodified	_MLKGMRRSP_					0	0	0		ENST00000608756.5_1_3:122145454-122145598:+|nuORF	ENST00000608756.5_1_3:122145454-122145598:+|nuORF	ENST00000608756.5_1_3:122145454-122145598:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2972412109375	2	538.296796	1074.57904	0.62331	0.00033553	2.5406	0.0013676	3.1639	0.0017031	538.2980934130035	59.502	1.3665	59.502	58.999	60.366	0					71	36	3	0	0	0	0.39228	2	6799	6788;6799		66.429	0.67341	1	9751600			51726	17598	36073	36125	57010;57011	57011					0.0447325805885157
MLKGMRRSP	9	Unmodified	_MLKGMRRSP_					0	0	0		ENST00000608756.5_1_3:122145454-122145598:+|nuORF	ENST00000608756.5_1_3:122145454-122145598:+|nuORF	ENST00000608756.5_1_3:122145454-122145598:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.298095703125	2	538.296796	1074.57904	-0.041801	-2.2501E-05	3.0092	0.0016199	2.9674	0.0015974	538.2983614346836	59.697	1.1521	59.497	59.245	60.397	-0.20016					67	30	4	0	0	0	0.15029	1	6816	6816		99.375	22.057	1	8129000			51727	17598	36073	36125	57012	57012					0.0447325805885157
MLKGMRRSP	9	Unmodified	_MLKGMRRSP_					0	0	0		ENST00000608756.5_1_3:122145454-122145598:+|nuORF	ENST00000608756.5_1_3:122145454-122145598:+|nuORF	ENST00000608756.5_1_3:122145454-122145598:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	538.296796	1074.57904	-0.49567	-0.00026682	3.5427	0.001907	3.047	0.0016402	538.2986391789228	59.397	0.88911	59.483	59.206	60.095	0.085682	-0.010858	0.00048581	NaN	99.375	58	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7875800			51728	17598	36073	36125							0.0447325805885157
MLKGYTPPY	9	Unmodified	_MLKGYTPPY_					0	0	0		QRSL1|p.I97T|1|0.21|ENSG00000130348|chr6:106643000-106643000|T/C|missense_variant	QRSL1|p.I97T|1|0.21|ENSG00000130348|chr6:106643000-106643000|T/C|missense_variant	QRSL1|p.I97T|1|0.21|ENSG00000130348|chr6:106643000-106643000|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.2705078125	2	535.272978	1068.5314	-0.65096	-0.00034844	-3.3624	-0.0017998	-4.0134	-0.0021483	535.2710882736466	52.369	1.3607	52.369	51.871	53.232	0					87	35	3	0	0	0	0.016838	3	5601	5588;5601;5612		152.63	22.951	1	4498800			51729	19016	36074	36126	57013;57014;57015	57014					-0.00012117660367039207
MLKKAHGL	8	Unmodified	_MLKKAHGL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.2705078125	2	449.270573	896.526593	0.44554	0.00020017	-0.46749	-0.00021003	-0.021945	-9.8591E-06	449.27027348204865	21.217	0.43368	21.04	20.822	21.256	-0.17721					15	8	2	0	0	0	1.0239	1	644	644		33.516	0.022601	1	199560			51730	5130	36075	36127	57016	57016					0.07419042987521607
MLKKAHGL	8	Unmodified	_MLKKAHGL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.2701721191406	2	449.270573	896.526593	0.20848	9.3665E-05	-0.27618	-0.00012408	-0.067703	-3.0417E-05	449.2703489188731	21.294	0.68341	21.103	20.784	21.468	-0.19072					27	13	3	0	0	0	1.0574	1	647	647		25.45	2.4135	1	162820			51731	5130	36075	36127	57017	57017					0.07419042987521607
MLKKAHGL	8	Unmodified	_MLKKAHGL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.27020263671875	2	449.270573	896.526593	-1.3876	-0.00062341	1.5481	0.00069553	0.16054	7.2125E-05	449.2711282684798	21.323	0.48869	21.11	20.921	21.41	-0.2128					27	9	5	0	0	0	1.0239	1	633	633		33.516	5.2613	1	146840			51732	5130	36075	36127	57018	57018					0.07419042987521607
MLKKKGKDIF	10	Unmodified	_MLKKKGKDIF_					0	0	0		ENSG00000233802|ENST00000623787|TRIM49D2;ENSG00000223417|ENST00000420869|TRIM49D1;ENSG00000182053|ENST00000332682|TRIM49B	ENSG00000233802|ENST00000623787|TRIM49D2	ENSG00000233802|ENST00000623787|TRIM49D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3662719726562	2	604.365201	1206.71585	-1.4686	-0.00088758	4.0305	0.0024359	2.5619	0.0015483	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.0997	1	13291	13291		14.865	0	1	4767200			51733	9095	36076	36128	57019	57019					0.12076070490184065
MLKKLLDGF	9	Unmodified	_MLKKLLDGF_					0	0	0			REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.81640625	2	532.81227	1063.60999	-0.44185	-0.00023542	-2.0856	-0.0011112	-2.5274	-0.0013466	533.3122342886335	88.662	0.38068	88.531	88.36	88.74	-0.13135					12	8	2	0	0	0	0.024506	1	10836	10836		38.806	27.295	1	54116	+		51734	21759	36077	36129	57020	57020					0.08072734644724733
MLKKSGLQGD	10	Unmodified	_MLKKSGLQGD_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;nc|ENSG00000085982|Q9NVE5-2|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.8133544921875	2	538.792066	1075.56958	0.29813	0.00016063	3.5183	0.0018956	3.8164	0.0020563	538.7940525937079	71.337	0.83157	71.048	70.633	71.464	-0.28858					38	20	2	0	0	0	0.03519	1	8644	8644		24.519	0	1	559350			51735	1804	36078	36130	57021	57021					0.034817682543234696
MLKLLADF	8	Unmodified	_MLKLLADF_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.2596740722656	2	475.772614	949.530675	-0.25066	-0.00011926	4.341	0.0020653	4.0903	0.0019461	475.7751118926224	43.761	0.34509	43.656	43.544	43.889	-0.10468					10	8	2	0	0	0	0.027866	1	4043	4043		25.45	1.2474	1	71621			51736	1870;18103	36079	36131	57022	57022					0.05389087690571159
MLKMTTSIN	9	Unmodified	_MLKMTTSIN_					0	0	0		nc|ENSG00000167770|Q96FW1-2|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	nc|ENSG00000167770|Q96FW1-2|OTUB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7923583984375	2	519.769745	1037.52494	-0.27373	-0.00014228	4.3673	0.00227	4.0936	0.0021277	519.7718195131793	53.982	0.52184	53.835	53.566	54.088	-0.14723					31	14	3	0	0	0	0.024457	1	5865	5865		45.952	10.334	1	513280			51737	18482	36080	36132	57023	57023					0.007676211166199209
MLKNLLEKV	9	Unmodified	_MLKNLLEKV_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.24755859375	2	544.330827	1086.6471	-0.88203	-0.00048012	-2.7211	-0.0014812	-3.6031	-0.0019613	544.3289907377091	52.425	0.43338	52.306	52.086	52.52	-0.11875					18	10	2	0	0	0	0.024447	1	5429	5429		32.812	0	1	150770	+		51738	26810;37445	36081	36133	57024	57024					0.10724406190479385
MLKNVNQKQ	9	Unmodified	_MLKNVNQKQ_					0	0	0			REV__ENST00000523994.1_1_8:37620177-37624049:+|nuORF	REV__ENST00000523994.1_1_8:37620177-37624049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.7864379882812	2	551.805508	1101.59646	-0.062543	-3.4511E-05	2.4388	0.0013457	2.3763	0.0013112	551.8077436788963	18.016	0.68988	17.884	17.464	18.154	-0.13147					16	13	2	0	0	0	0.024541	1	213	213		24.203	13.937	1	26066	+		51739	24558	36082	36134	57025	57025					0.04972876865485887
MLKRDIAM	8	Unmodified	_MLKRDIAM_					0	0	0		ENSG00000230453|ENST00000684830|ANKRD18B;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENSG00000230453|ENST00000684830|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENSG00000230453|ENST00000684830|ANKRD18B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.2654113769531	2	489.267173	976.519793	-1.1551	-0.00056515	-3.3341	-0.0016312	-4.4891	-0.0021964	489.26576454810476	55.84	2.6815	55.684	54.975	57.657	-0.15655					201	71	5	0	0	0	0.50239	8	6103	5971;6004;6016;6028;6040;6052;6064;6103		85.359	8.5128	1	79791000			51740	10689;12632	36083	36135	57026;57027;57028;57029;57030;57031;57032;57033	57033					0.030593620446438763
MLKRDIAM	8	Unmodified	_MLKRDIAM_					0	0	0		ENSG00000230453|ENST00000684830|ANKRD18B;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENSG00000230453|ENST00000684830|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENSG00000230453|ENST00000684830|ANKRD18B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2652587890625	2	489.267173	976.519793	-0.89131	-0.00043609	-3.6967	-0.0018087	-4.588	-0.0022448	489.2655824203169	55.918	2.8631	55.703	54.857	57.72	-0.21551					203	76	5	0	0	0	0.56592	8	5991	5991;6003;6015;6027;6039;6052;6064;6076		79.451	10.664	1	70664000			51741	10689;12632	36083	36135	57034;57035;57036;57037;57038;57039;57040;57041	57034					0.030593620446438763
MLKREMKP	8	Unmodified	_MLKREMKP_					0	0	0		ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.27197265625	2	516.788272	1031.56199	-0.011415	-5.899E-06	-2.7207	-0.001406	-2.7321	-0.0014119	516.7860349334948	39.568	0.37605	39.568	39.357	39.733	0					18	10	3	0	0	0	0.027866	1	3423	3423		42.474	19.432	1	175560			51742	10584	36084	36136	57042	57042					0.047473374530227375
MLKREMKP	8	Unmodified	_MLKREMKP_					0	0	0		ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2720947265625	2	516.788272	1031.56199	-1.0976	-0.00056722	0.25499	0.00013178	-0.8426	-0.00043544	516.7865517532704	39.613	0.42632	39.507	39.334	39.76	-0.1055					15	11	2	0	0	0	0.027866	1	3385	3385		52.299	26.849	1	199170			51743	10584	36084	36136	57043	57043					0.047473374530227375
MLKREMKP	8	Unmodified	_MLKREMKP_					0	0	0		ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2749633789062	2	516.788272	1031.56199	-0.7453	-0.00038516	-0.27018	-0.00013962	-1.0155	-0.00052479	516.7880612988884	45.724	0.41063	45.572	45.412	45.823	-0.15157					21	11	2	0	0	0	0.027866	1	4423	4423		20.947	3.582	1	1025700			51744	10584	36084	36136	57044	57044					0.047473374530227375
MLKREMKP	8	Unmodified	_MLKREMKP_					0	0	0		ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	ENSG00000215203|ENST00000399770|GRXCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.788272	1031.56199	-0.20589	-0.0001064	0.32387	0.00016737	0.11798	6.097E-05	517.2900469690665	39.789	0.43182	39.566	39.422	39.854	-0.22323	-0.029696	0.00087843	NaN	33.516	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100240			51745	10584	36084	36136							0.047473374530227375
MLKRQRSL	8	Oxidation (M)	_M(Oxidation (M))LKRQRSL_		M(1)LKRQRSL		M(88)LKRQRSL	0	0	1		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.3093872070312	2	524.308218	1046.60188	-0.046482	-2.4371E-05	-2.2956	-0.0012036	-2.3421	-0.001228	524.3073097027158	75.105	0.9119	74.829	74.352	75.264	-0.27573					56	21	4	0	0	0	0.47665	1	8875	8875		87.754	18.127	1	2458000			51746	2872	36085	36137	57045	57045		108			0.08044600447965422
MLKRQRSL	8	Oxidation (M)	_M(Oxidation (M))LKRQRSL_		M(1)LKRQRSL		M(88)LKRQRSL	0	0	1		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.3084716796875	2	524.308218	1046.60188	0.45855	0.00024042	-2.5737	-0.0013494	-2.1152	-0.001109	524.3071442169525	74.93	0.87778	74.747	74.309	75.187	-0.18279					52	20	4	0	0	0	0.47665	1	8842	8842		87.754	8.0417	1	2620600			51747	2872	36085	36137	57046	57046		108			0.08044600447965422
MLKSILLLT	9	Unmodified	_MLKSILLLT_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3232421875	2	516.330296	1030.64604	-0.087328	-4.509E-05	-3.3354	-0.0017222	-3.4227	-0.0017672	516.3284213209664	72.938	0.50689	72.673	72.511	73.017	-0.26479					21	11	2	0	0	0	0.024292	1	8613	8613		58.782	9.3404	1	264800	+		51748	27671	36086	36138	57047	57047					0.1319419182159436
MLKSILLLT	9	Unmodified	_MLKSILLLT_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.330296	1030.64604	-0.34107	-0.0001761	-3.0888	-0.0015949	-3.4299	-0.001771	516.3284607894616	73.039	0.42949	72.762	72.497	72.926	-0.2769	0.088452	0.00012152	NaN	49.442	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286870	+		51749	27671	36086	36138							0.1319419182159436
MLKSILLLT	9	Unmodified	_MLKSILLLT_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.330296	1030.64604	-0.39966	-0.00020636	-3.1947	-0.0016495	-3.5943	-0.0018559	516.3284617567336	72.784	0.54724	72.585	72.289	72.836	-0.1981	-0.088007	1.2209E-05	NaN	49.442	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293120	+		51750	27671	36086	36138							0.1319419182159436
MLKSQRLV	8	Unmodified	_MLKSQRLV_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7936706542969	2	487.794412	973.574271	-0.76602	-0.00037366	-2.4679	-0.0012038	-3.234	-0.0015775	487.7929929167153	36.154	1.1793	35.949	35.467	36.647	-0.20518					90	31	4	0	0	0	0.97924	1	2840	2840		40.573	1.3198	1	10344000	+		51751	24415	36087	36139	57048	57048					0.0864269718772448
MLKWVEAR	8	Unmodified	_MLKWVEAR_					0	0	0			REV__ENST00000477432.1_1_10:27443766-27443937:-|nuORF	REV__ENST00000477432.1_1_10:27443766-27443937:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2724609375	2	516.786587	1031.55862	-1.3261	-0.00068532	2.1587	0.0011156	0.83261	0.00043028	516.7869801695817	39.717	0.38073	39.74	39.562	39.942	0.023727					21	10	3	0	0	0	0.027866	1	3382	3382		40.573	0	1	193870	+		51752	33332	36088	36140	57049	57049					0.044104106706754465
MLLEDRND	8	Unmodified	_MLLEDRND_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7557678222656	2	503.237124	1004.45969	-0.17284	-8.6979E-05	-4.0942	-0.0020603	-4.267	-0.0021473	503.234832770477	47.605	0.35329	47.508	47.277	47.63	-0.097553					13	9	2	0	0	0	0.027866	1	4652	4652		24.203	0	1	67590	+		51753	22399	36089	36141	57050	57050					-0.04235657084882405
MLLEILIV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MLLEILIV_					1	0	0			REV__ENST00000563405.1_1_16:56872955-56872985:+|nuORF	REV__ENST00000563405.1_1_16:56872955-56872985:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.30572509765625	2	493.303747	984.592941	1.4181	0.00069955	1.9911	0.00098222	3.4092	0.0016818	493.30472465707845	59.354	0.87406	59.154	58.853	59.727	-0.20016					69	23	4	0	0	0	0.85409	1	6750	6750		54.765	6.8491	1	9720000	+		51754	35226	36090	36142	57051	57051					0.10002814038932684
MLLFPLPSTV	10	Unmodified	_MLLFPLPSTV_					0	0	0			REV__ENST00000265689.8_1_11:67820608-67820851:-|nuORF	REV__ENST00000265689.8_1_11:67820608-67820851:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	559.3212890625	2	559.319928	1116.6253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.409	1	67.409	66.909	67.909	0								0	0	0	0.66792	1	8046	8046		60.972	21.719	1		+		51755	29742	36091	36143	57052	57052					0.07165601441920444
MLLFPLPSTV	10	Unmodified	_MLLFPLPSTV_					0	0	0			REV__ENST00000265689.8_1_11:67820608-67820851:-|nuORF	REV__ENST00000265689.8_1_11:67820608-67820851:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.3212280273438	2	559.319928	1116.6253	0.25619	0.00014329	2.0037	0.0011207	2.2598	0.001264	559.3213840588617	67.669	1.4189	67.693	67.35	68.769	0.023911					59	36	2	0	0	0	1.0271	1	7980	7980		42.396	5.237	1	17229000	+		51756	29742	36091	36143	57053	57053					0.07165601441920444
MLLGFLVF	8	Unmodified	_MLLGFLVF_					0	0	0		ENST00000377126.3_1_9:73002336-73002447:-|nuORF	ENST00000377126.3_1_9:73002336-73002447:-|nuORF	ENST00000377126.3_1_9:73002336-73002447:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2720947265625	2	470.27225	938.529947	-0.28847	-0.00013566	0.17402	8.1836E-05	-0.11446	-5.3825E-05	470.2722458645397	91.332	2.0416	91.209	90.754	92.796	-0.12341					118	48	4	0	0	0	1.0241	1	11230	11230		33.493	0	1	5650700			51757	13198	36092	36144	57054	57054					0.05822293041535431
MLLGFLVF	8	Unmodified	_MLLGFLVF_					0	0	0		ENST00000377126.3_1_9:73002336-73002447:-|nuORF	ENST00000377126.3_1_9:73002336-73002447:-|nuORF	ENST00000377126.3_1_9:73002336-73002447:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2721862792969	2	470.27225	938.529947	-0.047033	-2.2118E-05	-0.22432	-0.00010549	-0.27136	-0.00012761	470.2720597866912	91.389	1.7988	91.249	90.823	92.622	-0.13942					104	42	5	0	0	0	1.0241	1	11185	11185		33.493	1.5381	1	5353800			51758	13198	36092	36144	57055	57055					0.05822293041535431
MLLGHHLP	8	Unmodified	_MLLGHHLP_					0	0	0		ENST00000509783.5_1_5:87966899-87980575:-|nuORF;ENST00000513805.5_1_5:87966879-87980629:-|nuORF	ENST00000509783.5_1_5:87966899-87980575:-|nuORF	ENST00000509783.5_1_5:87966899-87980575:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.221923828125	2	459.254923	916.495293	-0.42782	-0.00019648	0.71177	0.00032688	0.28395	0.0001304	459.2550979165923	43.244	0.56834	43.007	42.679	43.247	-0.23736					21	14	2	0	0	0	0.027866	1	3887	3887		24.504	11.545	1	300740			51759	15811	36093	36145	57056	57056					0.033704699534496285
MLLGLQSPV	9	Unmodified	_MLLGLQSPV_					0	0	0		KLK13|p.E129G|1|0.14|ENSG00000167759|chr19:51059947-51059947|T/C|missense_variant	KLK13|p.E129G|1|0.14|ENSG00000167759|chr19:51059947-51059947|T/C|missense_variant	KLK13|p.E129G|1|0.14|ENSG00000167759|chr19:51059947-51059947|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2780456542969	2	479.275521	956.536489	0.97614	0.00046784	3.0162	0.0014456	3.9924	0.0019134	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.89441	1	9939	9939		32.812	4.5581	1	7774800			51760	17806	36094	36146	57057	57057					0.05648186202256511
MLLGSGSLTT	10	Unmodified	_MLLGSGSLTT_					0	0	0			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2579345703125	2	490.260068	978.505582	0.0031706	1.5544E-06	-3.7477	-0.0018373	-3.7445	-0.0018358	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	1.0665	1	13422	13422		37.159	1.5408	1	6674100	+		51761	27296	36095	36147	57058	57058					0.015469880973569161
MLLGVPRL	8	Unmodified	_MLLGVPRL_					0	0	0		nc|ENSG00000107593|Q9P0L9-4|PKD2L1;PKD2L1|p.R697Efs*28|1|0.24|ENSG00000107593|chr10:100290439-100290439|G/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7826232910156	2	449.780773	897.546994	0.37635	0.00016927	4.1355	0.0018601	4.5118	0.0020293	449.7824362422643	18.494	0.39462	18.363	18.154	18.549	-0.13148					17	7	3	0	0	0	1.0574	1	299	299		23.037	1.3344	1	187030			51762	2845	36096	36148	57059	57059					0.09412213647328826
MLLHETEF	8	Unmodified	_MLLHETEF_					0	0	0			REV__nc|ENSG00000288705|P35504-2|UGT1A5	REV__nc|ENSG00000288705|P35504-2|UGT1A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.763427734375	2	510.24696	1018.47937	-0.55776	-0.00028459	-2.7887	-0.0014229	-3.3465	-0.0017075	510.2458816134035	49.149	0.30651	49.048	48.88	49.186	-0.1008					10	7	2	0	0	0	0.027866	1	4930	4930		52.299	11.521	1	123270	+		51763	37224	36097	36149	57060	57060					-0.02913281074131646
MLLIGWPV	8	Unmodified	_MLLIGWPV_					0	0	0			REV__chrX:97120275-97141665|192|21.42|0.12|7.45|+|2|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|8	REV__chrX:97120275-97141665|192|21.42|0.12|7.45|+|2|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2879943847656	2	464.769874	927.525196	-0.016356	-7.6018E-06	2.9913	0.0013903	2.9749	0.0013827	464.7711045651655	76.054	0.62077	75.885	75.475	76.095	-0.16853					31	15	3	0	0	0	0.027866	1	9016	9016		43.626	1.2299	1	421160	+		51764	19488	36098	36150	57061	57061					0.05853408898769885
MLLIMHGLF	9	Unmodified	_MLLIMHGLF_					0	0	0		ENST00000558439.5_1_15:51226794-51242057:+|nuORF	ENST00000558439.5_1_15:51226794-51242057:+|nuORF	ENST00000558439.5_1_15:51226794-51242057:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2779541015625	2	537.795566	1073.57658	-0.98618	-0.00053036	1.2026	0.00064674	0.2164	0.00011638	538.2986365750244	45.503	0.74618	45.355	45.079	45.825	-0.1488					47	21	4	0	0	0	0.024389	1	4450	4450		29.842	0	1	623720			51765	16749	36099	36151	57062	57062					0.04273409601159983
MLLISELTC	9	Unmodified	_MLLISELTC_					0	0	0		ENST00000367634.6_1_1:178885709-178885775:+|nuORF	ENST00000367634.6_1_1:178885709-178885775:+|nuORF	ENST00000367634.6_1_1:178885709-178885775:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.83404541015625	2	511.766671	1021.51879	-0.028466	-1.4568E-05	-0.19236	-9.8444E-05	-0.22083	-0.00011301	511.76651395374864	101.86	0.48367	101.85	101.58	102.06	-0.0054474					14	10	2	0	0	0	0.024541	1	12938	12938		31.955	7.7521	1	43981			51766	12871	36100	36152	57063	57063					0.008891028850712246
MLLIYDLTPQ	10	Unmodified	_MLLIYDLTPQ_					0	0	0		SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|24|2|sense	SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|24|2|sense	SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|24|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5719299316406	3	402.886142	1205.6366	0.517	0.00020829	3.697	0.0014895	4.214	0.0016978	402.8873942142094	42.853	0.49679	42.74	42.538	43.034	-0.11253					17	12	3	0	0	0	0.03519	1	3869	3869		38.754	6.0031	1	134150			51767	37986	36101	36153	57064	57064					0.04200378745395028
MLLKDMAVR	9	Unmodified	_MLLKDMAVR_					0	0	0		DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant;ENSG00000145214|ENST00000273814|DGKQ	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.7977905273438	2	538.80138	1075.58821	0.096069	5.1762E-05	-4.3144	-0.0023246	-4.2183	-0.0022728	538.7988209798648	101.13	0.67098	101	100.74	101.42	-0.12576					34	15	3	0	0	0	0.53979	1	12559	12559		56.721	1.2168	1	286590			51768	636	36102	36154	57065	57065					0.053436066245012626
MLLKKIGTPD	10	Unmodified	_MLLKKIGTPD_					0	0	0		ENST00000536483.1_1_8:48689432-48689492:-|nuORF	ENST00000536483.1_1_8:48689432-48689492:-|nuORF	ENST00000536483.1_1_8:48689432-48689492:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.810546875	2	558.328285	1114.64202	0.15575	8.696E-05	-2.9691	-0.0016578	-2.8134	-0.0015708	558.3262806266773	89.207	1.1773	89.207	88.47	89.647	0					47	27	3	0	0	0	0.03519	1	11302	11302		62.107	12.666	1	222510			51769	16362	36103	36155	57066	57066					0.08928102327877241
MLLKKIGTPD	10	Unmodified	_MLLKKIGTPD_					0	0	0		ENST00000536483.1_1_8:48689432-48689492:-|nuORF	ENST00000536483.1_1_8:48689432-48689492:-|nuORF	ENST00000536483.1_1_8:48689432-48689492:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.328285	1114.64202	0.37201	0.0002077	-3.9929	-0.0022293	-3.6208	-0.0020216	558.3259694045846	89.21	0.7589	89.225	88.753	89.511	0.015907	0.04818	-0.00030073	NaN	62.107	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195100			51770	16362	36103	36155							0.08928102327877241
MLLKTSAR	8	Unmodified	_MLLKTSAR_					0	0	0		ENST00000484662.1_1_1:78445136-78445292:+|nuORF	ENST00000484662.1_1_1:78445136-78445292:+|nuORF	ENST00000484662.1_1_1:78445136-78445292:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.2690124511719	2	460.273312	918.532072	-0.13584	-6.2523E-05	-3.89	-0.0017905	-4.0258	-0.001853	460.27131131666135	67.586	0.70413	67.353	67.012	67.716	-0.23375					33	16	3	0	0	0	0.71063	1	7795	7795		66.429	3.123	1	581720			51771	15307	36104	36156	57067	57067					0.06954721779345618
MLLKWIAYG	9	Unmodified	_MLLKWIAYG_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8064575195312	2	547.806988	1093.59942	-0.53826	-0.00029486	1.7939	0.00098273	1.2557	0.00068787	547.8077617899485	53.886	1.5047	53.984	53.303	54.807	0.098015					127	42	6	0	0	0	0.4855	1	5773	5773		60.294	7.3573	1	15141000			51772	7940	36105	36157	57068	57068					0.05636751990277844
MLLLAFLVA	9	Unmodified	_MLLLAFLVA_					0	0	0			REV__ENSG00000135845|ENST00000344529|PIGC	REV__ENSG00000135845|ENST00000344529|PIGC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.80548095703125	2	495.806457	989.598361	0.24948	0.0001237	-0.65586	-0.00032518	-0.40638	-0.00020149	495.8060840239016	89.945	1.4022	89.959	89.591	90.993	0.013443					84	33	4	0	0	0	0.80342	1	11294	11294		39.021	9.18	1	1074700	+		51773	23587	36106	36158	57069	57069					0.10314537621388808
MLLLLHCL	8	Unmodified	_MLLLLHCL_					0	0	0		ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant;nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29;ADAM29|p.K264Nfs*29|1|0.14|ENSG00000168594|chr4:174976313-174976313|G/-|frameshift_variant	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.79461669921875	2	478.277009	954.539466	-0.40786	-0.00019507	-0.18083	-8.6487E-05	-0.58869	-0.00028156	478.2766254841064	64.828	0.64275	64.828	64.617	65.26	0					53	17	4	0	0	0	0.027866	1	7656	7656		43.626	0	1	1964400			51774	23	36107	36159	57070	57070					0.060377380553973126
MLLLLHCL	8	Unmodified	_MLLLLHCL_					0	0	0		ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant;nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29;ADAM29|p.K264Nfs*29|1|0.14|ENSG00000168594|chr4:174976313-174976313|G/-|frameshift_variant	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	ADAM29|p.K675Efs*25|1|0.7|ENSG00000168594|chr4:174977541-174977542|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.79449462890625	2	478.277009	954.539466	-0.48171	-0.00023039	-0.10013	-4.7892E-05	-0.58184	-0.00027828	478.27669882391905	64.869	0.58653	64.906	64.634	65.221	0.037384					37	15	3	0	0	0	0.027866	1	7575	7575		33.493	0	1	2001300			51775	23	36107	36159	57071	57071					0.060377380553973126
MLLLLIGQSV	10	Unmodified	_MLLLLIGQSV_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2901611328125	2	543.833203	1085.65185	-1.2379	-0.0006732	3.7647	0.0020474	2.5268	0.0013741	543.8350737674133	48.444	0.43427	48.168	47.928	48.362	-0.27598					15	11	2	0	0	0	0.03519	1	4799	4799		45.972	8.8131	1	154930	+		51776	25714	36108	36160	57072	57072					0.11245290333272351
MLLLLLLLG	9	Unmodified	_MLLLLLLLG_					0	0	0		ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000163283|ENST00000392027|ALPP;LMAN2L-FAM178B|1|fusion;LMAN2L-FAM178B|2|fusion;ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000114988|Q9H0V9-2|LMAN2L;nc|ENSG00000211747|A0A075B6N2|TRBV20-1	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000211747|A0A075B6N2|TRBV20-1	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2879638671875	2	499.837757	997.660961	0.57632	0.00028807	2.3771	0.0011882	2.9534	0.0014762	499.83889162490306	49.255	0.43445	49.255	49.039	49.473	0					21	11	2	0	0	0	0.024475	1	5057	5057		21.702	0	1	206080			51777	66;3400;18697	36109	36161	57073	57073					0.16203683689593618
MLLLLLLLG	9	Unmodified	_MLLLLLLLG_					0	0	0		ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000163283|ENST00000392027|ALPP;LMAN2L-FAM178B|1|fusion;LMAN2L-FAM178B|2|fusion;ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000114988|Q9H0V9-2|LMAN2L;nc|ENSG00000211747|A0A075B6N2|TRBV20-1	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant;ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000211747|A0A075B6N2|TRBV20-1	ALPP|p.W34Qfs*34|1|0.14|ENSG00000163283|chr2:232378994-232379006|TGGAACCGCGAGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2889099121094	2	499.837757	997.660961	-0.15816	-7.9052E-05	3.1884	0.0015937	3.0303	0.0015146	499.83929430874826	49.51	0.44781	49.359	49.148	49.596	-0.1512					19	11	2	0	0	0	0.024475	1	5072	5072		39.021	17.319	1	236840			51778	66;3400;18697	36109	36161	57074	57074					0.16203683689593618
MLLLMGLLK	9	Unmodified	_MLLLMGLLK_					0	0	0		ENST00000396987.7_1_8:41479072-41479165:+|nuORF	ENST00000396987.7_1_8:41479072-41479165:+|nuORF	ENST00000396987.7_1_8:41479072-41479165:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2716674804688	2	516.321417	1030.62828	-1.0916	-0.00056363	1.6048	0.00082858	0.51313	0.00026494	516.3224784758303	39.582	0.46307	39.483	39.304	39.767	-0.098755					17	12	2	0	0	0	0.024386	1	3409	3409		52.299	6.3472	1	119780			51779	13571	36110	36162	57075	57075					0.11419153295082651
MLLLMGLLK	9	Unmodified	_MLLLMGLLK_					0	0	0		ENST00000396987.7_1_8:41479072-41479165:+|nuORF	ENST00000396987.7_1_8:41479072-41479165:+|nuORF	ENST00000396987.7_1_8:41479072-41479165:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.321417	1030.62828	-0.40998	-0.00021168	1.8367	0.00094833	1.4267	0.00073665	516.322361461457	39.563	0.50176	39.398	39.19	39.692	-0.16458	-0.053927	0.00023563	NaN	71.378	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380110			51780	13571	36110	36162							0.11419153295082651
MLLLMGLLK	9	Unmodified	_MLLLMGLLK_					0	0	0		ENST00000396987.7_1_8:41479072-41479165:+|nuORF	ENST00000396987.7_1_8:41479072-41479165:+|nuORF	ENST00000396987.7_1_8:41479072-41479165:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.321417	1030.62828	0.015988	8.255E-06	1.4117	0.00072889	1.4277	0.00073715	516.3219930812542	39.705	0.496	39.475	39.237	39.733	-0.23021	0.022921	-0.00020326	NaN	71.378	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353920			51781	13571	36110	36162							0.11419153295082651
MLLLVTVSD	9	Unmodified	_MLLLVTVSD_					0	0	0		ENSG00000143125|ENST00000271331|PROK1	ENSG00000143125|ENST00000271331|PROK1	ENSG00000143125|ENST00000271331|PROK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.782470703125	2	495.780636	989.546719	-1.2563	-0.00062286	1.1549	0.00057258	-0.10142	-5.0281E-05	495.78102939883263	90.451	2.7585	90.296	89.436	92.195	-0.1552					122	65	3	0	0	0	0.29104	1	11051	11051		76.847	11.043	1	1061600			51782	5611	36111	36163	57076	57076					0.051527491368347
MLLLVTVSD	9	Unmodified	_MLLLVTVSD_					0	0	0		ENSG00000143125|ENST00000271331|PROK1	ENSG00000143125|ENST00000271331|PROK1	ENSG00000143125|ENST00000271331|PROK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7807922363281	2	495.780636	989.546719	-0.54409	-0.00026975	0.34718	0.00017212	-0.19691	-9.7626E-05	495.7805879371351	90.44	4.2063	90.315	89.416	93.622	-0.12512					197	99	4	0	0	0	0.43973	1	11088	11088		63.306	5.495	1	1284300			51783	5611	36111	36163	57077	57077					0.051527491368347
MLLMSAENEV	10	Unmodified	_MLLMSAENEV_					0	0	0		ENSG00000185697|ENST00000522677|MYBL1;nc|ENSG00000185697|P10243-2|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.3011474609375	2	568.769942	1135.52533	-0.35262	-0.00020056	-0.43785	-0.00024903	-0.79047	-0.00044959	568.7694885249671	67.462	0.55588	67.174	66.832	67.388	-0.28834					22	13	2	0	0	0	0.03519	1	7987	7987		79.713	0	1	87542			51784	9465	36112	36164	57078	57078					-0.03701003954211046
MLLNDEKVL	9	Unmodified	_MLLNDEKVL_					0	0	0			REV__PSMD1-ATP2C1|1|fusion	REV__PSMD1-ATP2C1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7968139648438	2	537.796817	1073.57908	-0.15802	-8.4984E-05	0.26332	0.00014161	0.1053	5.6629E-05	537.7968506342702	77.823	3.8719	77.613	76.789	80.661	-0.21087					197	92	3	0	0	0	0.22902	1	9623	9623		85.161	10.906	1	2474600	+		51785	37415	36113	36165	57079	57079					0.04523536539818451
MLLNETVPQ	9	Unmodified	_MLLNETVPQ_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2979736328125	2	522.773342	1043.53213	0.35847	0.0001874	2.5886	0.0013532	2.947	0.0015406	523.2767043833218	52.017	0.18406	51.833	51.705	51.889	-0.18404					5	4	2	0	0	0	0.024374	1	5358	5358		40.778	9.2484	1	54063			51786	3380	36114	36166	57080	57080					0.012106769886713664
MLLPHTLQN	9	Unmodified	_MLLPHTLQN_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7869262695312	2	533.789327	1065.5641	-0.63534	-0.00033914	-2.9136	-0.0015552	-3.5489	-0.0018944	533.7876528963106	78.006	0.65116	78.006	77.712	78.363	0					38	15	4	0	0	0	0.50848	1	9642	9642		58.782	0.97068	1	1848700			51787	8590	36115	36167	57081	57081					0.03394089462517513
MLLQANLVQ	9	Unmodified	_MLLQANLVQ_					0	0	0		ENST00000299638.7_2_15:58007640-58007844:+|nuORF	ENST00000299638.7_2_15:58007640-58007844:+|nuORF	ENST00000299638.7_2_15:58007640-58007844:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.77490234375	2	515.291702	1028.56885	-0.93432	-0.00048145	-2.2607	-0.0011649	-3.1951	-0.0016464	515.2902800858868	69.116	0.45648	68.854	68.586	69.043	-0.26166					16	10	2	0	0	0	0.024205	1	7985	7985		63.306	4.5243	1	151070			51788	11886	36116	36168	57082	57082					0.05570973605244944
MLLQQPLIY	9	Unmodified	_MLLQQPLIY_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.815185546875	2	559.817553	1117.62055	-0.54512	-0.00030517	-3.0451	-0.0017047	-3.5903	-0.0020099	559.8157653628313	80.904	2.796	80.904	79.911	82.707	0					244	67	6	0	0	0	0.36105	3	10137	10113;10137;10175		68.485	8.3664	1	11331000			51789	651	36117	36169	57083;57084;57085	57084					0.06644717299172953
MLLQQPLIY	9	Unmodified	_MLLQQPLIY_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8152465820312	2	559.817553	1117.62055	-0.92952	-0.00052036	-2.6568	-0.0014873	-3.5863	-0.0020077	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.67308	1	10158	10158		47.916	1.9434	1	11139000			51790	651	36117	36169	57086	57086					0.06644717299172953
MLLQQPLIY	9	Unmodified	_MLLQQPLIY_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8153076171875	2	559.817553	1117.62055	0.050072	2.8031E-05	-3.6039	-0.0020175	-3.5538	-0.0019895	559.8155046600118	80.867	2.2167	80.629	80.287	82.504	-0.23784					212	52	6	0	0	0	0.52323	1	9746	9746		57.811	8.3697	1	31546000			51791	651	36117	36169	57087	57087					0.06644717299172953
MLLQQPLIY	9	Unmodified	_MLLQQPLIY_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8153686523438	2	559.817553	1117.62055	0.27362	0.00015318	-3.9538	-0.0022134	-3.6801	-0.0020602	559.8153286438504	80.895	2.2663	80.688	80.257	82.523	-0.20633					223	53	6	0	0	0	0.36105	1	9754	9754		68.485	9.7027	1	35108000			51792	651	36117	36169	57088	57088					0.06644717299172953
MLLQQPLIY	9	Oxidation (M)	_M(Oxidation (M))LLQQPLIY_		M(1)LLQQPLIY		M(46)LLQQPLIY	0	0	1		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.7935791015625	2	567.81501	1133.61547	0.41936	0.00023812	0.086301	4.9003E-05	0.50566	0.00028712	567.8136266253608	72.98	0.61208	72.699	72.303	72.915	-0.28124					20	14	2	0	0	0	0.024381	1	8849	8849		45.952	7.1458	1	228630			51793	651	36117	36170	57089	57089		16			0.05400413436541385
MLLQVPAK	8	Unmodified	_MLLQVPAK_					0	0	0			REV__nc|ENSG00000184838|Q569H4-2|PRR16	REV__nc|ENSG00000184838|Q569H4-2|PRR16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.2743225097656	2	450.272781	898.531009	0.10472	4.7152E-05	3.1032	0.0013973	3.208	0.0014445	450.27420091803094	92.333	2.0403	92.192	91.748	93.788	-0.14131					175	47	6	0	0	0	1.0574	1	11440	11440		26.796	2.5934	1	53243000	+		51794	27704	36118	36171	57090	57090					0.07768507410446546
MLLREALV	8	Unmodified	_MLLREALV_					0	0	0		ENST00000439456.5_1_10:180562-180649:+|nuORF	ENST00000439456.5_1_10:180562-180649:+|nuORF	ENST00000439456.5_1_10:180562-180649:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2843322753906	2	472.783513	943.552473	0.29707	0.00014045	3.255	0.0015389	3.5521	0.0016794	472.7866478462673	83.539	1.6973	83.448	83.043	84.741	-0.090454					83	39	5	0	0	0	0.91956	1	10387	10387		49.442	3.4896	1	3320500			51795	14334	36119	36172	57091	57091					0.07843892439154843
MLLSLSNHA	9	Unmodified	_MLLSLSNHA_					0	0	0			REV__chr11:118104820-118107741|218|17.86|0.85|4.39|+|2|TMPRSS4,None|1	REV__chr11:118104820-118107741|218|17.86|0.85|4.39|+|2|TMPRSS4,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30596923828125	2	493.260402	984.506251	-0.039956	-1.9709E-05	-2.8245	-0.0013932	-2.8644	-0.0014129	493.2565616071506	56.24	0.2807	56.24	56.07	56.351	0					9	7	2	0	0	0	0.021513	1	6249	6249		116.9	31.544	1	38718	+		51796	19349	36120	36173	57092	57092					0.013378275370541814
MLLSLVSNP	9	Unmodified	_MLLSLVSNP_					0	0	0		ENST00000482025.5_1_1:149908235-149908683:-|nuORF;ENST00000439741.3_2_1:149908572-149908737:-|nuORF;ENST00000466496.5_1_1:149902724-149908701:-|nuORF	ENST00000482025.5_1_1:149908235-149908683:-|nuORF	ENST00000482025.5_1_1:149908235-149908683:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7920227050781	2	487.272978	972.531403	0.20132	9.8096E-05	-2.2947	-0.0011182	-2.0934	-0.0010201	487.2711475331715	78.677	0.58174	78.485	78.176	78.757	-0.1921					23	13	2	0	0	0	0.024319	1	9671	9671		39.253	8.7492	1	263550			51797	14338	36121	36174	57093	57093					0.044038823396363114
MLLSLVSNP	9	Unmodified	_MLLSLVSNP_					0	0	0		ENST00000482025.5_1_1:149908235-149908683:-|nuORF;ENST00000439741.3_2_1:149908572-149908737:-|nuORF;ENST00000466496.5_1_1:149902724-149908701:-|nuORF	ENST00000482025.5_1_1:149908235-149908683:-|nuORF	ENST00000482025.5_1_1:149908235-149908683:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7920227050781	2	487.272978	972.531403	0.81511	0.00039718	0.56393	0.00027479	1.379	0.00067197	487.2731178109635	78.22	0.4082	78.028	77.849	78.257	-0.1921					12	9	2	0	0	0	0.024319	1	9671	9671		39.253	8.7492	1	167190			51798	14338	36121	36174	57094	57094					0.044038823396363114
MLLSVLLPL	9	Oxidation (M)	_M(Oxidation (M))LLSVLLPL_		M(1)LLSVLLPL		M(89)LLSVLLPL	0	0	1		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.8155517578125	2	507.817021	1013.61949	0.10536	5.3503E-05	-2.9654	-0.0015059	-2.8601	-0.0014524	507.81538695748867	103.96	1.2849	103.96	103.44	104.73	-0.0032196					76	31	4	0	0	0	0.20304	1	13252	13252		88.643	11.796	1	1138000			51799	6088	36122	36175	57095	57095		255			0.11322502930272549
MLLSYKHTDS	10	Unmodified	_MLLSYKHTDS_					0	0	0		ENST00000450801.1_1_X:138811061-138819898:-|nuORF;nc|ENSG00000101974|Q8NB49-3|ATP11C	ENST00000450801.1_1_X:138811061-138819898:-|nuORF	ENST00000450801.1_1_X:138811061-138819898:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8563232421875	2	597.794806	1193.57506	-2.1234	-0.0012694	-0.95066	-0.0005683	-3.0741	-0.0018377	597.7944518908108	92.645	0.41071	92.502	92.285	92.696	-0.14356					17	9	2	0	0	0	0.03519	1	11367	11367		47.657	0	1	68558			51800	14513	36123	36176	57096	57096					-0.013985529538786068
MLLTCFTAVN	10	Unmodified	_MLLTCFTAVN_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.2855224609375	2	556.77757	1111.54059	-0.33021	-0.00018385	2.5574	0.0014239	2.2272	0.0012401	556.7789307753545	23.873	0.73364	23.873	23.607	24.341	0					21	16	2	0	0	0	0.03519	1	1017	1017		31.53	0	1	119500	+		51801	28197	36124	36177	57097	57097					-0.010720923663257054
MLLTKVPLS	9	Unmodified	_MLLTKVPLS_					0	0	0		ENST00000418351.1_1_15:44281927-44282254:-|nuORF	ENST00000418351.1_1_15:44281927-44282254:-|nuORF	ENST00000418351.1_1_15:44281927-44282254:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29052734375	2	501.306821	1000.59909	0.60311	0.00030235	-0.21457	-0.00010757	0.38854	0.00019478	501.3070116796052	86.074	0.30556	85.931	85.841	86.147	-0.14218					10	6	2	0	0	0	0.024209	1	10467	10467		31.53	2.3803	1	36242			51802	13935	36125	36178	57098	57098					0.09881332270435905
MLLTSRTGR	9	Unmodified	_MLLTSRTGR_					0	0	0		SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|34|3|anti-sense	SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|34|3|anti-sense	SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|34|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2954711914062	2	517.792401	1033.57025	0.67035	0.0003471	2.0097	0.0010406	2.68	0.0013877	517.7931612830049	100.61	1.2417	100.49	100.17	101.42	-0.12503					57	32	2	0	0	0	0.42604	2	12491	12491;12509		64.207	5.3996	1	360170			51803	37982	36126	36179	57099;57100	57099					0.05480607694016726
MLLVFPLAM	9	Unmodified	_MLLVFPLAM_					0	0	0			REV__ENSG00000147873|ENST00000610521|IFNA5	REV__ENSG00000147873|ENST00000610521|IFNA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7942504882812	2	517.792492	1033.57043	0.092169	4.7724E-05	2.0595	0.0010664	2.1517	0.0011141	517.7932950561891	99.966	2.0637	99.795	97.829	99.892	-0.17088					67	51	2	0	0	0	0.48384	1	12373	12373		60.404	2.5924	1	468710	+		51804	24585	36127	36180	57101	57101					0.05498891369643388
MLLVLVDKF	9	Unmodified	_MLLVLVDKF_					0	0	0			REV__nc|ENSG00000116584|Q92974-2|ARHGEF2	REV__nc|ENSG00000116584|Q92974-2|ARHGEF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7933349609375	2	539.322471	1076.63039	-0.50931	-0.00027468	-2.9563	-0.0015944	-3.4656	-0.0018691	539.3208066686544	77.823	0.57337	77.823	77.469	78.042	0					27	13	3	0	0	0	0.024427	1	9645	9645		34.173	3.6689	1	247050	+		51805	22283	36128	36181	57102	57102					0.09513905304538639
MLLVVARKWP	10	Unmodified	_MLLVVARKWP_					0	0	0			REV__ENSG00000143315|ENST00000368090|PIGM	REV__ENSG00000143315|ENST00000368090|PIGM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9144287109375	3	404.914366	1211.72127	0.47792	0.00019352	-0.42177	-0.00017078	0.056144	2.2733E-05	404.9141274871819	20.281	0.62782	20.113	19.816	20.444	-0.16774					26	12	3	0	0	0	1.1228	1	536	536		22.58	0.79923	1	312760	+		51806	24222	36129	36182	57103	57103					0.12387794072674296
MLLYILIT	8	Unmodified	_MLLYILIT_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.30023193359375	2	490.298465	978.582376	-0.70487	-0.0003456	3.7621	0.0018445	3.0572	0.0014989	490.30024210987955	62.819	0.7415	62.819	62.489	63.23	0					32	18	2	0	0	0	0.96719	1	7328	7328		42.474	0.078325	1	2536000	+		51807	21300	36130	36183	57104	57104					0.09222831384499841
MLMFLALMTSV	11	3 Oxidation (M)	_M(Oxidation (M))LM(Oxidation (M))FLALM(Oxidation (M))TSV_		M(1)LM(1)FLALM(1)TSV		M(55)LM(55)FLALM(55)TSV	0	0	3			REV__nc|ENSG00000162897|Q8WWV6|FCAMR	REV__nc|ENSG00000162897|Q8WWV6|FCAMR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.54742431640625	3	435.548144	1303.6226	-0.65192	-0.00028394	-1.5918	-0.00069331	-2.2437	-0.00097725	435.54736292907126	29.627	1.2233	29.382	29.099	30.322	-0.24524					78	28	4	0	0	0	0.849	1	1841	1841		54.722	13.642	1	1920100	+		51808	25508	36131	36184	57105	57105		756;757;758			-0.017063580695548808
MLMLSHPF	8	Unmodified	_MLMLSHPF_					0	0	0		ENST00000501695.3_1_5:147758402-147763328:-|nuORF	ENST00000501695.3_1_5:147758402-147763328:-|nuORF	ENST00000501695.3_1_5:147758402-147763328:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.77935791015625	2	488.243166	974.47178	-0.44399	-0.00021677	-0.73676	-0.00035972	-1.1807	-0.00057649	488.2428612685888	75.626	0.44139	75.354	75.06	75.502	-0.27267					18	10	2	0	0	0	0.027866	1	8961	8961		86.935	4.6941	1	137830			51809	15655	36132	36185	57106	57106					-0.016477118753982722
MLMLSRVRG	9	Unmodified	_MLMLSRVRG_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7977905273438	2	531.799171	1061.58379	0.2082	0.00011072	-1.0288	-0.0005471	-0.82057	-0.00043638	531.7985031464159	99.062	1.2624	99.058	98.596	99.858	-0.0038834					82	28	4	0	0	0	0.32811	1	12642	12642		71.877	2.2498	1	3158900			51810	12269	36133	36186	57107	57107					0.055461422015923745
MLMQERIT	8	Unmodified	_MLMQERIT_					0	0	0		ENSG00000162398|ENST00000371273|LEXM	ENSG00000162398|ENST00000371273|LEXM	ENSG00000162398|ENST00000371273|LEXM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.26519775390625	2	511.262087	1020.50962	-0.69587	-0.00035577	3.9813	0.0020355	3.2855	0.0016797	511.264057219153	80.985	3.0657	80.985	80.626	83.692	0					179	73	5	0	0	0	0.62178	1	10138	10138		74.255	7.8258	1	8427000			51811	6937	36134	36187	57108	57108					0.00018754319421532273
MLNGWPVIS	9	Unmodified	_MLNGWPVIS_					0	0	0		ENSG00000102924|ENST00000219197|CBLN1	ENSG00000102924|ENST00000219197|CBLN1	ENSG00000102924|ENST00000219197|CBLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.7645568847656	2	508.76532	1015.51609	-0.55643	-0.00028309	2.8142	0.0014318	2.2578	0.0011487	508.7666702553777	66.06	0.78857	65.809	65.52	66.309	-0.25112					47	19	4	0	0	0	0.33245	1	7561	7561		71.296	14.575	1	1626800			51812	2446	36135	36188	57109	57109					0.008950155424486184
MLNLPYPNL	9	Unmodified	_MLNLPYPNL_					0	0	0			REV__ENST00000265077.7_1_5:82877612-82877705:+|nuORF	REV__ENST00000265077.7_1_5:82877612-82877705:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7496948242188	2	537.786253	1073.55795	-0.90386	-0.00048609	-3.0018	-0.0016143	-3.9056	-0.0021004	537.7843932329156	76.833	0.81763	76.604	76.16	76.977	-0.22843					41	19	3	0	0	0	0.024495	1	9391	9391		26.693	0	1	439050	+		51813	29733	36136	36189	57110	57110					0.024115712309594528
MLNLYRTNS	9	Unmodified	_MLNLYRTNS_					0	0	0			REV__ENSG00000128594|ENST00000249363|LRRC4	REV__ENSG00000128594|ENST00000249363|LRRC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.80859375	2	556.281866	1110.54918	-0.41608	-0.00023146	-2.2051	-0.0012266	-2.6211	-0.0014581	556.7833307030795	64.871	0.14841	64.908	64.78	64.928	0.037384					5	3	2	0	0	0	0.024397	1	7569	7569		39.253	20.991	1	62140	+		51814	22997	36137	36190	57111	57111					-0.0016740240553190233
MLNMLLVEL	9	Unmodified	_MLNMLLVEL_					0	0	0			REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	REV__ENST00000585058.1_1_17:29850640-29851216:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.298095703125	2	538.298139	1074.58172	-0.49567	-0.00026682	1.0484	0.00056433	0.5527	0.00029751	538.2986391789228	59.397	0.88911	59.483	59.206	60.095	0.085682					58	23	4	0	0	0	0.23085	1	6719	6719		84.916	0	1	7875800	+		51815	35567	36138	36191	57112	57112					0.04741668673136701
MLNRLSRKYP	10	Unmodified	_MLNRLSRKYP_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	639.3623657226562	2	639.360982	1276.70741	1.7487	0.0011181	1.7379	0.0011112	3.4867	0.0022292	639.3619295594426	109.95	0.62169	109.95	109.73	110.35	0					69	21	5	0	0	0	1.1197	1	13977	13977		20.947	0.95016	1	2552900	+		51816	20633	36139	36192	57113	57113					0.08012516573580797
MLNSLQPNKV	10	Oxidation (M)	_M(Oxidation (M))LNSLQPNKV_		M(1)LNSLQPNKV		M(75)LNSLQPNKV	0	0	1		ENSG00000103742|ENST00000352385|IGDCC4;ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	580.3091430664062	2	580.310623	1158.60669	-1.2379	-0.00071834	-1.5526	-0.00090101	-2.7905	-0.0016194	580.3097909076911	64.575	0.93478	64.313	63.976	64.911	-0.2626					64	24	4	0	0	0	0.61732	1	7593	7593		75.043	6.2565	1	4432400			51817	2527	36140	36193	57114	57114		97			0.03373439800043343
MLPGFTSTVS	10	Unmodified	_MLPGFTSTVS_					0	0	0		ENST00000510434.1_1_1:2338290-2339958:-|nuORF	ENST00000510434.1_1_1:2338290-2339958:-|nuORF	ENST00000510434.1_1_1:2338290-2339958:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.261962890625	2	520.260068	1038.50558	-1.1222	-0.00058384	3.9802	0.0020707	2.858	0.0014869	520.2622174647464	22.622	1.0252	22.696	22.365	23.39	0.073954					64	22	5	0	0	0	0.82838	1	785	785		58.782	0.97068	1	5396700			51818	15822	36141	36194	57115	57115					-0.012130119026551256
MLPKLYTD	8	Unmodified	_MLPKLYTD_					0	0	0			REV__nc|ENSG00000083312|Q92973-3|TNPO1	REV__nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.8062744140625	2	490.759704	979.504854	0.82545	0.0004051	-0.35394	-0.0001737	0.4715	0.0002314	490.75957035811933	96.816	0.88397	96.816	96.44	97.324	-3.8147E-05					31	19	2	0	0	0	0.027866	1	12241	12241		55.504	5.4797	1	54195	+		51819	20712	36142	36195	57116	57116					0.014281934483051373
MLPKMVNKF	9	Unmodified	_MLPKMVNKF_					0	0	0		ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8057250976562	2	554.306298	1106.59804	0.050093	2.7767E-05	3.9845	0.0022086	4.0346	0.0022364	554.3102127489971	67.975	0.67787	67.737	67.589	68.267	-0.23814					63	16	6	0	0	0	0.024262	1	7862	7862		47.916	0	1	989090			51820	7650	36143	36196	57117	57117					0.04900794629884331
MLPLDNLKI	9	Oxidation (M)	_M(Oxidation (M))LPLDNLKI_		M(1)LPLDNLKI		M(72)LPLDNLKI	0	0	1		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;ENST00000590806.5_1_19:10922561-10941720:+|nuORF;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;ENST00000590787.1_1_19:10922561-10934848:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.8096313476562	2	536.807185	1071.59982	-0.31882	-0.00017114	3.6187	0.0019425	3.2998	0.0017714	536.8093963268041	31.75	0.72121	31.509	31.185	31.906	-0.2406					31	17	3	0	0	0	0.32811	1	2156	2156		71.877	7.6702	1	1884600			51821	1675	36144	36197	57118	57118		60			0.0668812691947096
MLPLLGTRA	9	Unmodified	_MLPLLGTRA_					0	0	0		ENSG00000164326|ENST00000296777|CARTPT	ENSG00000164326|ENST00000296777|CARTPT	ENSG00000164326|ENST00000296777|CARTPT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3036193847656	2	486.288963	970.563372	-0.23172	-0.00011269	0.89022	0.0004329	0.6585	0.00032022	486.2898407748617	47.84	0.61992	47.564	47.231	47.851	-0.27598					25	16	2	0	0	0	0.024	1	4684	4684		45.952	3.4775	1	190370			51822	7261	36145	36198	57119	57119					0.07691294813446348
MLPLLLLLS	9	Unmodified	_MLPLLLLLS_					0	0	0			REV__ENSG00000189377|ENST00000601181|CXCL17	REV__ENSG00000189377|ENST00000601181|CXCL17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.82745361328125	2	506.827389	1011.64023	0.1956	9.9134E-05	3.5438	0.0017961	3.7394	0.0018952	506.8290359919761	67.51	0.93263	67.534	67.23	68.163	0.023911					50	23	4	0	0	0	0.4855	1	7994	7994		60.294	0	1	1939500	+		51823	28119	36146	36199	57120	57120					0.13487093309925058
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.7638854980469	2	468.764789	935.515025	-0.052266	-2.4501E-05	0.23832	0.00011171	0.18605	8.7214E-05	468.7647792363128	69.015	1.4707	69.015	68.444	69.915	0					103	37	4	0	0	0	0.10076	1	8306	8306		110.34	52.526	1	2067100			51824	2683	36147	36200	57121	57121					0.0446880117353885
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.7641296386719	2	468.764789	935.515025	0.69793	0.00032716	-0.49313	-0.00023116	0.2048	9.6005E-05	468.7644434358407	69.335	1.3635	69.042	68.556	69.92	-0.29291					96	34	4	0	0	0	0.033883	1	8313	8313		138.48	58.54	1	2143000			51825	2683	36147	36200	57122	57122					0.0446880117353885
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.76507568359375	2	468.764789	935.515025	0.38782	0.0001818	-0.156	-7.3129E-05	0.23182	0.00010867	468.76456274185387	69.025	1.4633	69.04	68.532	69.995	0.015129					97	37	3	0	0	0	0.20304	2	8211	8211;8247		88.643	28.349	1	2021900			51826	2683	36147	36200	57123;57124	57123					0.0446880117353885
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.76495361328125	2	468.764789	935.515025	-0.51297	-0.00024046	0.49423	0.00023168	-0.018741	-8.785E-06	468.7648941332275	69.397	1.4203	69.13	68.66	70.08	-0.26724					75	33	3	0	0	0	0.18276	2	8039	8039;8051		92.191	29.212	1	970910			51827	2683	36147	36200	57125;57126	57125					0.0446880117353885
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.764789	935.515025	0.30843	0.00014458	-0.39629	-0.00018577	-0.087861	-4.1186E-05	468.7644799096877	69.343	1.4449	69.093	68.619	70.064	-0.25005	0.036686	-0.00034266	NaN	138.48	76	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920280			51828	2683	36147	36200							0.0446880117353885
MLPPPPLTA	9	Unmodified	_MLPPPPLTA_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.764789	935.515025	-0.44062	-0.00020655	0.32984	0.00015462	-0.11078	-5.193E-05	468.76480828772947	69.24	1.243	69.017	68.645	69.888	-0.22245	-0.039	0.00033811	NaN	138.48	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	892180			51829	2683	36147	36200							0.0446880117353885
MLPSHFPD	8	Unmodified	_MLPSHFPD_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.29498291015625	2	472.220746	942.426938	0.82361	0.00038892	2.9818	0.0014081	3.8054	0.001797	472.22206799972565	58.124	1.2741	58.124	57.796	59.07	0					51	34	2	0	0	0	0.027866	1	6555	6555		42.474	15.782	1	267160			51830	10655	36148	36201	57127	57127					-0.0465781941708201
MLPSSIGLP	9	Unmodified	_MLPSSIGLP_					0	0	0		ENST00000551407.5_1_12:77199143-77199209:+|nuORF	ENST00000551407.5_1_12:77199143-77199209:+|nuORF	ENST00000551407.5_1_12:77199143-77199209:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2791442871094	2	457.754421	913.494289	0.14187	6.4942E-05	-2.7802	-0.0012726	-2.6383	-0.0012077	457.7524349277895	74.897	0.39979	74.907	74.732	75.132	0.010376					13	9	2	0	0	0	0.024466	1	9099	9099		42.474	10.52	1	66610			51831	16600	36149	36202	57128	57128					0.03408210793861599
MLPSSIGLP	9	Unmodified	_MLPSSIGLP_					0	0	0		ENST00000551407.5_1_12:77199143-77199209:+|nuORF	ENST00000551407.5_1_12:77199143-77199209:+|nuORF	ENST00000551407.5_1_12:77199143-77199209:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.7993469238281	2	457.754421	913.494289	-0.38084	-0.00017433	-0.047324	-2.1663E-05	-0.42816	-0.00019599	457.7545611917401	72.674	0.38071	72.476	72.33	72.71	-0.19811					16	8	2	0	0	0	0.02309	1	8526	8526		68.485	0	1	115360			51832	16600	36149	36202	57129	57129					0.03408210793861599
MLPSSIGLP	9	Unmodified	_MLPSSIGLP_					0	0	0		ENST00000551407.5_1_12:77199143-77199209:+|nuORF	ENST00000551407.5_1_12:77199143-77199209:+|nuORF	ENST00000551407.5_1_12:77199143-77199209:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.754421	913.494289	0.11986	5.4865E-05	-3.3021	-0.0015116	-3.1823	-0.0014567	457.7526124823584	75.128	0.44552	74.883	74.591	75.037	-0.24455	-0.012013	-0.00014857	NaN	33.516	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59345			51833	16600	36149	36202							0.03408210793861599
MLPVMEKP	8	Unmodified	_MLPVMEKP_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.272216796875	2	472.750824	943.487096	-0.18051	-8.5337E-05	2.7862	0.0013172	2.6057	0.0012318	472.75098989772107	48.414	0.95686	48.227	47.596	48.553	-0.18684					50	25	3	0	0	0	0.027866	1	4788	4788		33.516	0	1	829960	+		51834	26188	36150	36203	57130	57130					0.013091549217961074
MLPVQWILLT	10	Unmodified	_MLPVQWILLT_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.57208251953125	3	405.238627	1212.69405	1.2556	0.00050882	3.6052	0.001461	4.8608	0.0019698	405.2400848202821	20.95	0.78775	20.754	20.187	20.975	-0.19577					22	15	2	0	0	0	0.03519	1	611	611		20.837	0	1	121800	+		51835	20536	36151	36204	57131	57131					0.09621265741634488
MLQEPLLV	8	Unmodified	_MLQEPLLV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7719421386719	2	471.770071	941.52559	0.75311	0.00035529	2.8276	0.001334	3.5807	0.0016893	471.7712681907095	39.932	1.5621	39.932	39.627	41.189	0					93	43	3	0	0	0	0.46709	2	3481	3469;3481		88.643	8.7036	1	13354000			51836	7168	36152	36205	57132;57133	57133					0.052487838279716925
MLQEPLLV	8	Unmodified	_MLQEPLLV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7720031738281	2	471.770071	941.52559	-0.09875	-4.6587E-05	3.6988	0.001745	3.6001	0.0016984	471.7716667330411	40.034	1.7025	39.922	39.603	41.305	-0.11223					90	46	3	0	0	0	0.46709	1	3487	3487		88.643	8.7036	1	13385000			51837	7168	36152	36205	57134	57134					0.052487838279716925
MLQEPLLV	8	Unmodified	_MLQEPLLV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.77191162109375	2	471.770071	941.52559	-0.30123	-0.00014211	4.15	0.0019578	3.8487	0.0018157	471.7718853747908	40.157	1.2378	40.18	39.873	41.111	0.023006					76	34	3	0	0	0	0.42327	2	3460	3438;3460		94.006	8.6469	1	14076000			51838	7168	36152	36205	57135;57136	57136					0.052487838279716925
MLQILLPH	8	Unmodified	_MLQILLPH_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2867736816406	2	482.786056	963.557558	0.29089	0.00014044	-1.0668	-0.00051505	-0.77593	-0.00037461	482.78756279131346	20.364	0.58692	20.196	19.955	20.542	-0.16774					24	11	3	0	0	0	1.0133	1	542	542		35.201	4.6971	1	278670			51839	9326	36153	36206	57137	57137					0.07432196301772365
MLQINQMFSVQ	11	Unmodified	_MLQINQMFSVQ_					0	0	0		nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF	nc|ENSG00000040341|Q9NUL3-3|STAU2	nc|ENSG00000040341|Q9NUL3-3|STAU2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.7615661621094	3	446.889669	1337.64718	-0.57815	-0.00025837	3.7891	0.0016933	3.2109	0.0014349	446.8912487001541	25.918	0.44891	25.682	25.467	25.916	-0.23603					17	10	2	0	0	0	0.024779	1	1255	1255		21.78	5.7737	1	188810			51840	18043	36154	36207	57138	57138					-0.008139618718132624
MLQINQMFSVQ	11	Unmodified	_MLQINQMFSVQ_					0	0	0		nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF	nc|ENSG00000040341|Q9NUL3-3|STAU2	nc|ENSG00000040341|Q9NUL3-3|STAU2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	446.889669	1337.64718	-0.23764	-0.0001062	3.613	0.0016146	3.3754	0.0015084	446.8910381932792	25.708	0.44177	25.537	25.33	25.771	-0.17078	-0.072423	-0.00010789	NaN	10.998	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152060			51841	18043	36154	36207							-0.008139618718132624
MLQKELEVI	9	Oxidation (M)	_M(Oxidation (M))LQKELEVI_		M(1)LQKELEVI		M(99)LQKELEVI	0	0	1			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8095092773438	2	559.809925	1117.6053	-0.59098	-0.00033084	-0.68493	-0.00038343	-1.2759	-0.00071426	559.8088472148211	82.835	0.8622	82.694	82.434	83.296	-0.14014					42	19	5	0	0	0	0.15366	1	9974	9974		98.629	8.0285	1	1034100	+		51842	25151	36155	36208	57139	57139		745			0.051198057112969764
MLQRAFVE	8	Unmodified	_MLQRAFVE_					0	0	0			REV__ENSG00000172732|ENST00000308110|MUS81	REV__ENSG00000172732|ENST00000308110|MUS81	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2627868652344	2	497.262945	992.511337	-0.17985	-8.9431E-05	-0.29417	-0.00014628	-0.47402	-0.00023571	497.26276530146424	48.49	5.7611	48.308	45.839	51.6	-0.18206					294	155	2	0	0	0	0.68164	1	4883	4883		68.787	5.4806	1	7142700	+		51843	26701	36156	36209	57140	57140					0.014781313996763856
MLQSAKLIF	9	Unmodified	_MLQSAKLIF_					0	0	0			REV__ENST00000409333.1_1_2:170662338-170663331:+|nuORF	REV__ENST00000409333.1_1_2:170662338-170663331:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.8028564453125	2	525.804445	1049.59434	-0.89928	-0.00047285	-2.9403	-0.001546	-3.8396	-0.0020189	525.8029813282415	101.69	1.3686	101.69	101.28	102.65	0					75	30	4	0	0	0	0.15029	1	13020	13020		99.375	5.3685	1	2025900	+		51844	31957	36157	36210	57141	57141					0.07152448127658317
MLQSAKLIF	9	Unmodified	_MLQSAKLIF_					0	0	0			REV__ENST00000409333.1_1_2:170662338-170663331:+|nuORF	REV__ENST00000409333.1_1_2:170662338-170663331:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.8026733398438	2	525.804445	1049.59434	-0.34685	-0.00018237	-3.4756	-0.0018275	-3.8224	-0.0020099	525.8027046355868	101.64	1.3777	101.65	101.25	102.63	0.0090332					77	31	5	0	0	0	0.25032	1	12984	12984		82.305	0	1	2034600	+		51845	31957	36157	36210	57142	57142					0.07152448127658317
MLQSAKLIF	9	Unmodified	_MLQSAKLIF_					0	0	0			REV__ENST00000409333.1_1_2:170662338-170663331:+|nuORF	REV__ENST00000409333.1_1_2:170662338-170663331:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.802734375	2	525.804445	1049.59434	0.37671	0.00019808	-4.1463	-0.0021801	-3.7696	-0.0019821	525.802385848111	101.72	1.529	101.71	101.06	102.59	-0.0054474					86	34	5	0	0	0	0.25032	1	12931	12931		82.305	5.4584	1	2156700	+		51846	31957	36157	36210	57143	57143					0.07152448127658317
MLQTDPTAR	9	Unmodified	_MLQTDPTAR_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000562407.1_1_16:23695226-23699079:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2724609375	2	516.760766	1031.50698	-1.3063	-0.00067505	-1.5036	-0.00077698	-2.8099	-0.001452	516.7598836903211	40.035	0.82338	40.058	39.67	40.494	0.023006					33	22	2	0	0	0	0.024381	1	3382	3382		37.159	9.2769	1	423190			51847	7617	36158	36211	57144	57144					-0.007513778138900307
MLRAPLGP	8	Unmodified	_MLRAPLGP_					0	0	0			REV__ENSG00000235173|ENST00000347708|HGH1	REV__ENSG00000235173|ENST00000347708|HGH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.2197265625	2	427.749473	853.484393	-0.33892	-0.00014497	-1.6165	-0.00069144	-1.9554	-0.00083641	427.7480757007846	27.455	0.63677	27.287	26.892	27.528	-0.16816					22	14	2	0	0	0	0.027866	1	1522	1522		13.775	0	1	96763	+		51848	28924	36159	36212	57145	57145					0.05179067579149432
MLRAPRAQA	9	Unmodified	_MLRAPRAQA_					0	0	0		ENST00000489998.5_1_1:157765891-157772050:-|nuORF;nc|ENSG00000163534|Q96LA6-3|FCRL1;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1	ENST00000489998.5_1_1:157765891-157772050:-|nuORF	ENST00000489998.5_1_1:157765891-157772050:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.8169250488281	2	507.287285	1012.56002	-0.17971	-9.1167E-05	-4.3445	-0.0022039	-4.5242	-0.0022951	507.2854682429374	102.24	0.56769	102.24	101.98	102.55	0.0073471					18	12	2	0	0	0	0.024294	1	13080	13080		45.952	15.448	1	62865			51849	7101	36160	36213	57146	57146					0.05424044759422486
MLRAPRLGE	9	Unmodified	_MLRAPRLGE_					0	0	0		ENST00000450506.5_1_1:151318414-151318804:-|nuORF;ENST00000435314.5_1_1:151317644-151318786:-|nuORF;ENST00000421986.5_1_1:151317641-151318804:-|nuORF	ENST00000450506.5_1_1:151318414-151318804:-|nuORF	ENST00000450506.5_1_1:151318414-151318804:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7927856445312	2	521.794943	1041.57533	-0.35382	-0.00018462	-3.9767	-0.002075	-4.3305	-0.0022596	521.7928790990622	45.058	0.65354	45.102	44.858	45.512	0.043877					56	18	4	0	0	0	0.39228	1	4285	4285		66.429	6.4985	1	2675200			51850	14001	36161	36214	57147	57147					0.0562091155663893
MLRDTAQV	8	Unmodified	_MLRDTAQV_					0	0	0			REV__UBE2Q1|p.S247C|1|0.16|ENSG00000160714|chr1:154552810-154552810|G/C|missense_variant	REV__UBE2Q1|p.S247C|1|0.16|ENSG00000160714|chr1:154552810-154552810|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7529296875	2	467.244752	932.474951	-0.88028	-0.00041131	0.63018	0.00029445	-0.2501	-0.00011686	467.24491102161323	43.719	0.87174	43.719	43.038	43.91	0					30	23	2	0	0	0	0.027866	1	4085	4085		58.782	5.4305	1	89087	+		51851	25340	36162	36215	57148	57148					0.006012545029534522
MLREGLKM	8	Unmodified	_MLREGLKM_					0	0	0		ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.2657775878906	2	489.267173	976.519793	-1.1551	-0.00056515	-3.3341	-0.0016312	-4.4891	-0.0021964	489.26576454810476	55.84	2.6815	55.684	54.975	57.657	-0.15655					201	71	5	0	0	0	0.6536	2	6076	6076;6088		71.296	7.8021	1	79791000			51852	4834	36163	36216	57149;57150	57149					0.030593620446666137
MLREGLKM	8	Unmodified	_MLREGLKM_					0	0	0		ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	ENST00000508561.5_1_4:56283240-56284276:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.265625	2	489.267173	976.519793	-0.89131	-0.00043609	-3.6967	-0.0018087	-4.588	-0.0022448	489.2655824203169	55.918	2.8631	55.703	54.857	57.72	-0.21551					203	76	5	0	0	0	0.73796	1	6088	6088		64.207	18.255	1	70664000			51853	4834	36163	36216	57151	57151					0.030593620446666137
MLREMRGSIT	10	Unmodified	_MLREMRGSIT_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-5|CASK;ENST00000472704.1_1_X:41411986-41437658:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.7752685546875	2	597.3101	1192.60565	-0.35021	-0.00020918	3.6898	0.0022039	3.3396	0.0019948	597.3126426649143	69.221	0.53727	68.978	68.707	69.244	-0.24277					18	12	2	0	0	0	0.03519	1	8001	8001		30.318	4.7437	1	348160			51854	5926	36164	36217	57152	57152					0.017049021595084923
MLRFPIVGF	9	Unmodified	_MLRFPIVGF_					0	0	0		ENST00000392975.6_1_17:61509951-61510191:-|nuORF	ENST00000392975.6_1_17:61509951-61510191:-|nuORF	ENST00000392975.6_1_17:61509951-61510191:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7796630859375	2	540.307155	1078.59976	-1.4196	-0.000767	2.7784	0.0015012	1.3588	0.00073419	540.3085089591973	35.446	0.35397	35.259	35.061	35.415	-0.18675					15	8	2	0	0	0	0.024541	1	2677	2677		19.36	0	1	209490			51855	13436	36165	36218	57153	57153					0.06360171710139184
MLRGAVIIFTG	11	Unmodified	_MLRGAVIIFTG_					0	0	0		ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.341726	1176.6689	-1.9349	-0.0011403	3.84	0.002263	1.9051	0.0011227	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0238	1	11522	11522		31.53	0	1	15816000			51856	10519	36166	36219	57154	57154					0.08763210939059718
MLRGQPKVF	9	Unmodified	_MLRGQPKVF_					0	0	0			REV__ENSG00000168538|ENST00000334690|TRAPPC11	REV__ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.32861328125	2	538.307687	1074.60082	-1.3011	-0.00070037	-0.49457	-0.00026623	-1.7956	-0.0009666	538.3072198042768	81.574	0.50623	81.431	81.192	81.698	-0.14249					18	11	2	0	0	0	0.024436	1	9831	9831		30.504	0	1	113450	+		51857	26272	36167	36220	57155	57155					0.06650386079036252
MLRGRGPPAS	10	Unmodified	_MLRGRGPPAS_					0	0	0		ENST00000483271.1_1_1:246729750-246729876:+|nuORF	ENST00000483271.1_1_1:246729750-246729876:+|nuORF	ENST00000483271.1_1_1:246729750-246729876:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7838745117188	2	521.284743	1040.55493	-0.04096	-2.1352E-05	1.1513	0.00060013	1.1103	0.00057878	521.2850997954566	107.22	0.49437	107.22	106.92	107.41	-0.003479					23	15	2	0	0	0	0.03519	1	13704	13704		47.657	25.697	1	93854			51858	15279	36168	36221	57156	57156					0.03627740896808973
MLRHLARP	8	Unmodified	_MLRHLARP_					0	0	0			REV__ENST00000512101.5_1_11:67058263-67058509:+|nuORF	REV__ENST00000512101.5_1_11:67058263-67058509:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2682800292969	2	497.292371	992.570189	-0.97035	-0.00048255	1.6998	0.00084528	0.72941	0.00036273	497.2932000100499	35.06	0.10892	35.038	34.976	35.085	-0.021763					4	2	2	0	0	0	0.027866	1	2660	2660		33.516	0	1	43762	+		51859	34133	36169	36222	57157	57157					0.07360652484669572
MLRIVNAR	8	Unmodified	_MLRIVNAR_					0	0	0			REV__ENSG00000122033|ENST00000381120|MTIF3	REV__ENSG00000122033|ENST00000381120|MTIF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7906799316406	2	486.792204	971.569854	0.49815	0.0002425	0.8222	0.00040024	1.3204	0.00064274	486.79311854825517	83.294	0.80894	83.203	82.787	83.596	-0.090454					26	18	2	0	0	0	0.027866	1	10355	10355		16.473	8.2419	1	271270	+		51860	22626	36170	36223	57158	57158					0.08293232764822278
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2638244628906	2	497.26463	992.514707	-0.97259	-0.00048363	-3.8512	-0.0019151	-4.8238	-0.0023987	497.262694898755	44.149	1.7048	44.044	43.544	45.249	-0.10468					128	45	5	0	0	0	0.74904	1	4102	4102		63.306	3.0123	1	26568000			51861	2296	36171	36224	57159	57159					0.018150581820350453
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2622985839844	2	497.26463	992.514707	-0.60669	-0.00030169	-3.0503	-0.0015168	-3.657	-0.0018185	497.2629896396473	48.345	6.1114	48.248	45.849	51.96	-0.097553					376	164	4	0	0	0	0.87148	1	4828	4828		53.351	2.016	1	6694800			51862	2296	36171	36224	57160	57160					0.018150581820350453
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.26251220703125	2	497.26463	992.514707	-0.96299	-0.00047886	-2.5956	-0.0012907	-3.5586	-0.0017695	497.2631239256717	55.892	1.6292	55.735	54.863	56.492	-0.15655					103	43	4	0	0	0	0.6248	2	6008	6008;6019		73.975	2.679	1	4499600			51863	2296	36171	36224	57161;57162	57161					0.018150581820350453
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2630310058594	2	497.26463	992.514707	-0.92701	-0.00046097	-3.8493	-0.0019141	-4.7763	-0.0023751	497.26266559054324	44.306	1.5544	44.062	43.711	45.266	-0.2444					122	41	5	0	0	0	0.87148	1	4131	4131		53.351	3.3269	1	25420000			51864	2296	36171	36224	57163	57163					0.018150581820350453
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2628173828125	2	497.26463	992.514707	0.0056123	2.7908E-06	-3.5806	-0.0017805	-3.575	-0.0017777	497.26270370587906	55.931	1.5618	55.714	54.906	56.468	-0.21607					91	42	4	0	0	0	0.6248	2	6034	6034;6045		73.975	5.49	1	3583600			51865	2296	36171	36224	57164;57165	57164					0.018150581820350453
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2626647949219	2	497.26463	992.514707	-1.1969	-0.00059516	-3.3563	-0.001669	-4.5532	-0.0022641	497.2628922867642	44.307	1.5271	44.087	43.749	45.276	-0.21938					120	41	5	0	0	0	0.87148	1	4119	4119		53.351	3.3269	1	26614000			51866	2296	36171	36224	57166	57166					0.018150581820350453
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2631530761719	2	497.26463	992.514707	-0.17985	-8.9431E-05	-3.6835	-0.0018317	-3.8634	-0.0019211	497.26276530146424	48.49	5.7611	48.308	45.839	51.6	-0.18206					294	155	2	0	0	0	0.74904	4	4817	4817;4835;4858;4918		63.306	2.3343	1	7142700			51867	2296	36171	36224	57167;57168;57169;57170	57167					0.018150581820350453
MLRKIMDS	8	Unmodified	_MLRKIMDS_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.26226806640625	2	497.26463	992.514707	-1.2848	-0.00063888	-2.5487	-0.0012674	-3.8335	-0.0019063	497.2632221713858	55.94	1.6637	55.725	54.967	56.631	-0.21551					91	44	3	0	0	0	0.87148	1	6022	6022		53.351	5.4358	1	3439000			51868	2296	36171	36224	57171	57171					0.018150581820350453
MLRLFRFLR	9	Unmodified	_MLRLFRFLR_					0	0	0		ENST00000315717.9_1_2:219118712-219118979:+|nuORF	ENST00000315717.9_1_2:219118712-219118979:+|nuORF	ENST00000315717.9_1_2:219118712-219118979:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.9224548339844	3	417.921744	1250.7434	0.42376	0.0001771	0.83906	0.00035066	1.2628	0.00052776	417.92203568971775	104.35	0.97945	104.35	103.94	104.92	0					69	25	4	0	0	0	0.97973	1	13399	13399		24.519	3.487	1	2568700			51869	12138	36172	36225	57172	57172					0.1280601854109591
MLRNDFLN	8	Unmodified	_MLRNDFLN_					0	0	0		ENST00000400943.3_1_1:240136137-240136869:+|nuORF	ENST00000400943.3_1_1:240136137-240136869:+|nuORF	ENST00000400943.3_1_1:240136137-240136869:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.3141784667969	2	511.758027	1021.5015	1.072	0.0005486	-2.7217	-0.0013928	-1.6497	-0.00084424	512.2573239035785	51.383	0.42995	51.202	51.023	51.453	-0.18071					13	10	2	0	0	0	0.027866	1	5269	5269		68.787	8.4929	1	61568			51870	13663	36173	36226	57173	57173					-0.00839056605695987
MLRNRRFRLS	10	Unmodified	_MLRNRRFRLS_					0	0	0		ENST00000374273.7_1_20:34207666-34208825:+|nuORF	ENST00000374273.7_1_20:34207666-34208825:+|nuORF	ENST00000374273.7_1_20:34207666-34208825:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.74072265625	3	450.26294	1347.76699	-0.90073	-0.00040557	2.2955	0.0010336	1.3947	0.000628	450.26375950076545	30.522	0.45922	30.522	30.216	30.675	0					26	10	3	0	0	0	0.03519	1	1970	1970		32.751	0	1	243280			51871	13106	36174	36227	57174	57174					0.10701832307609038
MLRQREDLE	9	Unmodified	_MLRQREDLE_					0	0	0		ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.3035888671875	2	595.303329	1188.59211	-0.87409	-0.00052035	0.7432	0.00044243	-0.13089	-7.7917E-05	595.3037266176278	40.984	1.1786	40.849	40.561	41.74	-0.13553					68	30	4	0	0	0	0.50848	1	3599	3599		58.782	0	1	6027200			51872	5250	36175	36228	57175	57175					0.005353676519462169
MLRQREDLE	9	Unmodified	_MLRQREDLE_					0	0	0		ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.3035278320312	2	595.303329	1188.59211	-0.89278	-0.00053148	0.57284	0.00034101	-0.31994	-0.00019046	595.3036846381788	41.192	1.047	40.964	40.69	41.737	-0.2278					72	26	5	0	0	0	0.43973	1	3631	3631		63.306	0	1	6187600			51873	5250	36175	36228	57176	57176					0.005353676519462169
MLRTEKRR	8	Unmodified	_MLRTEKRR_					0	0	0		ENST00000494763.1_1_22:34157486-34318474:-|nuORF;ENST00000432776.5_1_22:34157486-34269105:-|nuORF;ENST00000397394.6_1_22:34157486-34316007:-|nuORF	ENST00000494763.1_1_22:34157486-34318474:-|nuORF	ENST00000494763.1_1_22:34157486-34318474:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3162231445312	2	545.319117	1088.62368	-0.23737	-0.00012944	-4.3462	-0.00237	-4.5835	-0.0024995	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	1.0009	1	10955	10955		37.159	1.5408	1	3529900			51874	13592	36176	36229	57177	57177					0.08291405196519008
MLRTHSLSN	9	Unmodified	_MLRTHSLSN_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2415161132812	2	529.774208	1057.53386	-1.4957	-0.00079241	-3.202	-0.0016963	-4.6978	-0.0024888	529.7722186726814	43.654	0.68599	43.654	43.224	43.91	0					25	18	2	0	0	0	0.02366	1	4132	4132		63.534	27.087	1	235840			51875	7612	36177	36230	57178	57178					0.007397307973178613
MLSELIGR	8	Unmodified	_MLSELIGR_					0	0	0			REV__ENSG00000165409|ENST00000298171|TSHR	REV__ENSG00000165409|ENST00000298171|TSHR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.2482604980469	2	459.757495	917.500437	0.42586	0.00019579	1.7775	0.00081722	2.2034	0.001013	459.7563631720503	70.999	0.15363	71.01	70.896	71.05	0.010735					5	3	2	0	0	0	0.027866	1	8511	8511		11.511	0	1	46261	+		51876	25884	36178	36231	57179	57179					0.038387290254149775
MLSELKDEY	9	Unmodified	_MLSELKDEY_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2664794921875	2	564.26809	1126.52163	-0.50348	-0.0002841	-2.8474	-0.0016067	-3.3508	-0.0018908	564.2664155553152	73.059	1.0531	72.862	72.583	73.636	-0.19731					66	25	4	0	0	0	0.56934	1	8593	8593		54.776	0.053964	1	3438300			51877	4533	36179	36232	57180	57180					-0.03657350456387576
MLSEWLID	8	Unmodified	_MLSEWLID_					0	0	0		ENSG00000169371|ENST00000308588|SNUPN	ENSG00000169371|ENST00000308588|SNUPN	ENSG00000169371|ENST00000308588|SNUPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.27264404296875	2	503.749336	1005.48412	-0.65304	-0.00032897	-1.2168	-0.00061296	-1.8698	-0.00094193	503.75046987193537	50.209	0.53414	50.209	49.842	50.376	0					20	15	2	0	0	0	0.027866	1	5261	5261		40.573	5.3719	1	91536			51878	7932	36180	36233	57181	57181					-0.01840396931356736
MLSKKHTI	8	Unmodified	_MLSKKHTI_					0	0	0		WWP1|p.L691H|1|0.13|ENSG00000123124|chr8:86448221-86448221|T/A|missense_variant	WWP1|p.L691H|1|0.13|ENSG00000123124|chr8:86448221-86448221|T/A|missense_variant	WWP1|p.L691H|1|0.13|ENSG00000123124|chr8:86448221-86448221|T/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.28240966796875	2	479.281137	956.547722	0.43898	0.00021039	-0.47761	-0.00022891	-0.038627	-1.8513E-05	479.2807761633834	20.443	0.68604	20.275	20.002	20.688	-0.16774					26	13	3	0	0	0	0.53593	1	547	547		82.241	0	1	455590			51879	38157	36181	36234	57182	57182					0.0677100829640267
MLSKKHTI	8	Unmodified	_MLSKKHTI_					0	0	0		WWP1|p.L691H|1|0.13|ENSG00000123124|chr8:86448221-86448221|T/A|missense_variant	WWP1|p.L691H|1|0.13|ENSG00000123124|chr8:86448221-86448221|T/A|missense_variant	WWP1|p.L691H|1|0.13|ENSG00000123124|chr8:86448221-86448221|T/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2815856933594	2	479.281137	956.547722	-0.068876	-3.3011E-05	-0.024205	-1.1601E-05	-0.093081	-4.4612E-05	479.28099814896524	20.61	0.59549	20.386	20.117	20.712	-0.22344					25	11	4	0	0	0	0.36844	1	544	544		101.6	0	1	442080			51880	38157	36181	36234	57183	57183					0.0677100829640267
MLSKSDIKE	9	Unmodified	_MLSKSDIKE_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7764892578125	2	525.778625	1049.5427	-0.37367	-0.00019647	-2.9429	-0.0015473	-3.3166	-0.0017438	525.7768985860498	27.042	0.8046	26.885	26.629	27.434	-0.15664					41	18	4	0	0	0	0.2101	1	1434	1434		87.696	2.7809	1	773420			51881	1753	36182	36235	57184	57184					0.019906596431155776
MLSLEIKTQ	9	Unmodified	_MLSLEIKTQ_					0	0	0		ENST00000422732.2_10:47098040-47098154:-|nuORF	ENST00000422732.2_10:47098040-47098154:-|nuORF	ENST00000422732.2_10:47098040-47098154:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7986450195312	2	531.796817	1061.57908	0.2082	0.00011072	3.3979	0.001807	3.6061	0.0019177	531.7985031464159	99.062	1.2624	99.058	98.596	99.858	-0.0038834					82	28	4	0	0	0	0.067814	1	12616	12616		122.18	1.555	1	3158900			51882	14012	36183	36236	57185	57185					0.05075536539834502
MLSLLWFN	8	Unmodified	_MLSLLWFN_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2706909179688	2	512.270238	1022.52592	-0.23912	-0.0001225	1.6305	0.00083528	1.3914	0.00071278	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	0.78609	1	13700	13700		60.294	8.9585	1	6463600	+		51883	22676	36184	36237	57186	57186					0.015562035478183134
MLSNKPWN	8	Unmodified	_MLSNKPWN_					0	0	0		nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-2|BUB1	nc|ENSG00000169679|O43683-3|BUB1	nc|ENSG00000169679|O43683-3|BUB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2977600097656	2	495.247295	988.480036	0.00069778	3.4558E-07	-2.8827	-0.0014276	-2.882	-0.0014273	495.24574291595593	54.325	0.55374	54.079	53.891	54.445	-0.2453					31	16	3	0	0	0	0.027866	1	5797	5797		65.803	0	1	375100			51884	7963	36185	36238	57187	57187					-0.014664416344203346
MLSPCGLLIV	10	Unmodified	_MLSPCGLLIV_					0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2979736328125	2	523.292856	1044.57116	0.66941	0.0003503	2.0485	0.0010719	2.7179	0.0014222	523.2937129938047	51.733	1.1744	51.549	51.14	52.314	-0.18404					85	30	4	0	0	0	0.60134	1	5358	5358		76.847	0.072494	1	7021700	+		51885	36720	36186	36239	57188	57188					0.05065686018701854
MLSPHTFRP	9	Unmodified	_MLSPHTFRP_					0	0	0			REV__ENST00000524342.5_1_5:133476457-133478640:+|nuORF	REV__ENST00000524342.5_1_5:133476457-133478640:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.28076171875	2	543.281669	1084.54878	-0.47634	-0.00025879	-3.466	-0.001883	-3.9423	-0.0021418	543.279932079317	62.007	0.98759	61.793	61.375	62.362	-0.21375					113	24	6	0	0	0	0.50848	1	7017	7017		58.782	0.55203	1	31083000	+		51886	34340	36187	36240	57189	57189					0.009892226652937097
MLSQLKTF	8	Unmodified	_MLSQLKTF_					0	0	0		ENST00000376588.3_1_9:80943898-80943973:+|nuORF	ENST00000376588.3_1_9:80943898-80943973:+|nuORF	ENST00000376588.3_1_9:80943898-80943973:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.27825927734375	2	484.267696	966.520839	-0.80653	-0.00039058	-1.2217	-0.00059163	-2.0282	-0.0009822	484.26706179786447	94.273	0.86581	94.279	93.971	94.837	0.0059891					36	20	2	0	0	0	0.027866	1	11918	11918		24.203	9.3379	1	185280			51887	13181	36188	36241	57190	57190					0.03623899685203469
MLSRKLSP	8	Unmodified	_MLSRKLSP_					0	0	0			REV__nc|ENSG00000108344|O43242-2|PSMD3;REV__ENST00000485835.1_1_17:38151035-38151804:+|nuORF	REV__nc|ENSG00000108344|O43242-2|PSMD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7563781738281	2	466.273312	930.532072	0.034849	1.6249E-05	0.9843	0.00045895	1.0192	0.0004752	466.27382179127324	29.417	0.7648	29.495	29.368	30.133	0.078344					40	18	3	0	0	0	0.027866	1	1757	1757		63.306	17.354	1	5191800	+		51888	21725;33572	36189	36242	57191	57191					0.06402721779340936
MLSSIALKK	9	Unmodified	_MLSSIALKK_					0	0	0			REV__ENST00000440114.1_1_2:198359415-198360034:-|nuORF	REV__ENST00000440114.1_1_2:198359415-198360034:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.8040466308594	2	495.804445	989.594338	-0.50371	-0.00024974	4.2846	0.0021243	3.7809	0.0018746	495.80652594744515	90.022	1.3395	89.897	89.373	90.712	-0.12512					80	31	4	0	0	0	0.72875	1	11022	11022		44.117	0.49075	1	722730	+		51889	32523	36190	36243	57192	57192					0.09912448127670359
MLSSQALRL	9	Oxidation (M)	_M(Oxidation (M))LSSQALRL_		M(1)LSSQALRL		M(80)LSSQALRL	0	0	1		nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.7848510742188	2	517.786784	1033.55902	0.54747	0.00028347	-4.0072	-0.0020748	-3.4597	-0.0017914	517.7845604309063	72.386	0.861	72.105	71.807	72.668	-0.28124					50	21	3	0	0	0	0.26966	2	8770	8770;8782		79.713	11.228	1	1957200			51890	18378	36191	36244	57193;57194	57193		575			0.043577855998591986
MLSSQALRL	9	Oxidation (M)	_M(Oxidation (M))LSSQALRL_					0	0	1		nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.786784	1033.55902	0.094639	4.9003E-05	-3.399	-0.00176	-3.3044	-0.001711	517.7848359272008	72.04	0.77631	72.04	71.756	72.533	0	-0.046285	0.0003469	NaN	79.713	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1999900			51891	18378	36191	36244				575			0.043577855998591986
MLSSQQHFLF	10	Unmodified	_MLSSQQHFLF_					0	0	0		ENST00000256447.5_2_5:66492527-66492614:-|nuORF	ENST00000256447.5_2_5:66492527-66492614:-|nuORF	ENST00000256447.5_2_5:66492527-66492614:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	619.8689575195312	2	619.305341	1236.59613	-0.81955	-0.00050755	-3.2273	-0.0019987	-4.0469	-0.0025062	619.8051441912859	94.441	0.28622	94.304	94.132	94.418	-0.13779					13	6	3	0	0	0	0.03519	1	11613	11613		27.882	8.7787	1	25354			51892	11396	36192	36245	57195	57195					-0.012705428543767994
MLSTPIRR	8	Unmodified	_MLSTPIRR_					0	0	0			REV__ENST00000510531.5_1_5:6644946-6645183:+|nuORF	REV__ENST00000510531.5_1_5:6644946-6645183:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2909851074219	2	487.284211	972.55387	0.44448	0.00021659	1.1162	0.00054391	1.5607	0.0007605	487.2845683278866	102.07	0.72652	101.9	101.6	102.33	-0.17178					25	17	2	0	0	0	1.043	1	12705	12705		30.504	0.6621	1	46876	+		51893	34104	36193	36246	57196	57196					0.06649526527928629
MLSTPIRR	8	Unmodified	_MLSTPIRR_					0	0	0			REV__ENST00000510531.5_1_5:6644946-6645183:+|nuORF	REV__ENST00000510531.5_1_5:6644946-6645183:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.284211	972.55387	0.20082	9.7859E-05	1.816	0.0008849	2.0168	0.00098276	487.284838523479	102.03	0.14067	101.91	101.86	102	-0.12666	0.0025203	0.00056765	NaN	30.504	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28778	+		51894	34104	36193	36246							0.06649526527928629
MLSVRFSGN	9	Unmodified	_MLSVRFSGN_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000466451.1_1_10:12199921-12200143:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.7615661621094	2	505.758027	1009.5015	-0.010776	-5.4499E-06	4.4375	0.0022443	4.4267	0.0022389	505.76053150486666	106.76	0.69756	106.76	106.33	107.03	-0.003479					38	22	2	0	0	0	0.83071	2	13667	13667;13674		37.159	2.9866	1	269380			51895	1317	36194	36247	57197;57198	57197					-0.0028705660569130487
MLSVRFSGN	9	Unmodified	_MLSVRFSGN_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000466451.1_1_10:12199921-12200143:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7611999511719	2	505.758027	1009.5015	0.072243	3.6538E-05	4.2679	0.0021585	4.3402	0.0021951	505.7605255283673	106.9	0.66476	106.9	106.47	107.14	0.0018311					37	20	2	0	0	0	0.78069	1	13631	13631		40.573	3.5441	1	287360			51896	1317	36194	36247	57199	57199					-0.0028705660569130487
MLTEALLVLN	10	Unmodified	_MLTEALLVLN_					0	0	0			REV__CXCR1|p.D265E|1|0.23|ENSG00000163464|chr2:218164417-218164417|G/T|missense_variant	REV__CXCR1|p.D265E|1|0.23|ENSG00000163464|chr2:218164417-218164417|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.7757568359375	2	558.820292	1115.62603	0.35896	0.00020059	-4.167	-0.0023286	-3.8081	-0.002128	558.8182133378862	96.297	0.49897	96.16	95.936	96.435	-0.13671					15	11	2	0	0	0	0.03519	1	11920	11920		45.972	19.279	1	97518	+		51897	19635	36195	36248	57200	57200					0.07284396090972223
MLTEIAREV	9	Unmodified	_MLTEIAREV_					0	0	0			REV__S100A14|p.I26M|1|0.31|ENSG00000189334|chr1:153615334-153615334|G/C|missense_variant	REV__S100A14|p.I26M|1|0.31|ENSG00000189334|chr1:153615334-153615334|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.305419921875	2	531.286617	1060.55868	-1.1047	-0.00058691	0.77796	0.00041332	-0.32673	-0.00017359	531.2869205815364	48.089	0.76466	47.813	47.492	48.257	-0.27598					49	20	3	0	0	0	0.024447	1	4783	4783		25.574	0	1	1264600	+		51898	37456	36196	36249	57201	57201					0.03082365880004545
MLTEYHPLG	9	Unmodified	_MLTEYHPLG_					0	0	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7593994140625	2	530.760235	1059.50592	0.26411	0.00014018	-3.3534	-0.0017798	-3.0892	-0.0016396	530.7582937272027	96.697	1.061	96.703	96.397	97.458	0.0065079					59	23	4	0	0	0	0.55828	1	12293	12293		55.504	5.4797	1	538290			51899	9489	36197	36250	57202	57202					-0.02145592182796463
MLTGTPESV	9	Unmodified	_MLTGTPESV_					0	0	0		FUBP1-USP33|2|fusion;FUBP1-USP33|3|fusion;FUBP1-USP33|1|fusion;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	FUBP1-USP33|2|fusion	FUBP1-USP33|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.7315368652344	2	467.731143	933.447733	-0.61764	-0.00028889	0.87707	0.00041023	0.25942	0.00012134	467.7314098507256	60.057	1.5229	60.136	59.199	60.722	0.078888					94	40	4	0	0	0	0.43973	1	6834	6834		63.306	2.3343	1	5205500			51900	17664	36198	36251	57203	57203					-0.021652738280636186
MLTLPILVC	9	Unmodified	_MLTLPILVC_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7907409667969	2	501.789949	1001.56535	-0.22025	-0.00011052	2.1655	0.0010866	1.9452	0.00097609	501.7910621581766	86.886	0.80456	86.749	86.443	87.248	-0.13734					54	18	4	0	0	0	0.52323	1	10550	10550		57.811	4.4598	1	2236300			51901	920	36199	36252	57204	57204					0.06462587507053286
MLTLRSLLF	9	Unmodified	_MLTLRSLLF_					0	0	0		ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.32763671875	2	547.325545	1092.63654	-1.0326	-0.00056517	4.1391	0.0022654	3.1065	0.0017003	547.3277245964109	57.279	0.85739	57.375	56.684	57.541	0.095306					65	23	4	0	0	0	0.50848	2	6348	6338;6348		58.782	2.0609	1	4271600			51902	8232	36200	36253	57205;57206	57206					0.09392423536064598
MLTLRSLLF	9	Unmodified	_MLTLRSLLF_					0	0	0		ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	547.325545	1092.63654	-0.17293	-9.4651E-05	3.1694	0.0017347	2.9965	0.0016401	547.3271763228121	57.592	0.91434	57.417	56.769	57.684	-0.1749	0.021473	-0.00035453	NaN	58.782	71	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4166200			51903	8232	36200	36253							0.09392423536064598
MLTLRSLLF	9	Unmodified	_MLTLRSLLF_					0	0	0		ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	547.325545	1092.63654	-0.99334	-0.00054368	-2.827	-0.0015473	-3.8203	-0.002091	547.3228427557585	57.661	0.23092	57.427	57.312	57.543	-0.23363	0.031262	-0.0069185	NaN	58.782	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59596			51904	8232	36200	36253							0.09392423536064598
MLTQMMPAWR	10	Unmodified	_MLTQMMPAWR_					0	0	0			REV__ENST00000487486.5_1_22:30188501-30200764:-|nuORF	REV__ENST00000487486.5_1_22:30188501-30200764:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.5206604003906	3	422.204823	1263.59264	0.042609	1.799E-05	0.61873	0.00026123	0.66134	0.00027922	422.20443142795676	33.983	0.32294	33.759	33.6	33.923	-0.22412					10	7	2	0	0	0	0.03519	1	2474	2474		26.75	13.938	1	59267	+		51905	33609	36201	36254	57207	57207					-0.02861252224238342
MLTRLLVGNT	10	Unmodified	_MLTRLLVGNT_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.3214111328125	2	559.323534	1116.63251	0.25619	0.00014329	-4.4422	-0.0024846	-4.186	-0.0023413	559.3213840588617	67.669	1.4189	67.693	67.35	68.769	0.023911					59	36	2	0	0	0	0.99657	1	8003	8003		46.457	4.0606	1	17229000	+		51906	20119	36202	36255	57208	57208					0.07886334042359522
MLTRWLQI	8	Oxidation (M)	_M(Oxidation (M))LTRWLQI_		M(1)LTRWLQI		M(110)LTRWLQI	0	0	1			REV__ENSG00000172113|ENST00000442597|NME6	REV__ENSG00000172113|ENST00000442597|NME6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8013916015625	2	538.799694	1075.58484	-0.077593	-4.1807E-05	0.74862	0.00040336	0.67103	0.00036155	538.7997054203987	87.804	0.67743	87.769	87.489	88.167	-0.035362					33	16	3	0	0	0	0.30538	1	11059	11059		110.34	17.142	1	1849800	+		51907	26634	36203	36256	57209	57209		785			0.050066798421539715
MLTVRLLDS	9	Unmodified	_MLTVRLLDS_					0	0	0		ENST00000193322.7_2_6:108365005-108365041:-|nuORF	ENST00000193322.7_2_6:108365005-108365041:-|nuORF	ENST00000193322.7_2_6:108365005-108365041:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2976684570312	2	524.296985	1046.57942	-0.2623	-0.00013752	1.3023	0.00068278	1.04	0.00054526	524.2975724524634	103.03	1.0612	103.03	102.67	103.73	0.0054169					80	26	4	0	0	0	0.23085	1	13168	13168		84.916	0	1	4374000			51908	11125	36204	36257	57210	57210					0.05798956259695842
MLTWKSSF	8	Unmodified	_MLTWKSSF_					0	0	0		ENST00000577827.5_1_18:8122082-8296373:+|nuORF	ENST00000577827.5_1_18:8122082-8296373:+|nuORF	ENST00000577827.5_1_18:8122082-8296373:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.25347900390625	2	500.252046	998.489538	0.34017	0.00017017	2.3844	0.0011928	2.7245	0.001363	500.25313152370046	95.743	0.79414	95.747	95.389	96.183	0.0033798					41	18	3	0	0	0	0.74904	1	12168	12168		63.306	2.3343	1	654170			51909	17122	36205	36258	57211	57211					-0.009766733488845603
MLVAGLLLW	9	Unmodified	_MLVAGLLLW_					0	0	0		nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.3017883300781	2	508.304081	1014.59361	-0.76104	-0.00038684	-3.6076	-0.0018338	-4.3686	-0.0022206	508.30208349404677	55.636	1.4334	55.48	54.901	56.334	-0.15655					93	38	3	0	0	0	0.32257	1	6054	6054		72.62	16.186	1	1941200			51910	721	36206	36259	57212	57212					0.08689653478620585
MLVAGLLLW	9	Unmodified	_MLVAGLLLW_					0	0	0		nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.3018493652344	2	508.304081	1014.59361	-0.13688	-6.9575E-05	-4.3141	-0.0021929	-4.451	-0.0022625	508.3016883344783	55.812	1.4169	55.596	55.012	56.429	-0.21607					105	38	3	0	0	0	0.22343	1	6058	6058		85.909	29.475	1	2058700			51911	721	36206	36259	57213	57213					0.08689653478620585
MLVDLLAKNKS	11	Unmodified	_MLVDLLAKNKS_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	616.857421875	2	616.357573	1230.70059	-0.31663	-0.00019516	-2.4118	-0.0014865	-2.7284	-0.0016817	616.3560328222162	85.536	1.7173	85.478	84.563	86.28	-0.05761					110	40	4	0	0	0	0.25451	1	10675	10675		93.598	5.9011	1	677840			51912	9641	36207	36260	57214	57214					0.09447158902344199
MLVDLLAKNKS	11	Unmodified	_MLVDLLAKNKS_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	616.357573	1230.70059	0.34681	0.00021376	-2.9981	-0.0018479	-2.6513	-0.0016341	616.355660354759	85.546	1.502	85.546	84.669	86.171	0	0.059416	-0.00099093	NaN	93.598	81	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618320			51913	9641	36207	36260							0.09447158902344199
MLVDLLAKNKS	11	Unmodified	_MLVDLLAKNKS_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	616.357573	1230.70059	-1.408	-0.00086784	-1.3842	-0.00085318	-2.7923	-0.001721	616.3566752659624	85.41	1.5836	85.435	84.62	86.204	0.025536	-0.051068	0.00099851	NaN	93.598	114	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595290			51914	9641	36207	36260							0.09447158902344199
MLVEGFTSFY	10	Oxidation (M)	_M(Oxidation (M))LVEGFTSFY_		M(1)LVEGFTSFY		M(94)LVEGFTSFY	0	0	1			REV__ENSG00000120948|ENST00000240185|TARDBP	REV__ENSG00000120948|ENST00000240185|TARDBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	605.24365234375	2	605.278457	1208.54236	-0.3314	-0.00020059	-3.1401	-0.0019007	-3.4715	-0.0021012	605.2785093358495	69.837	0.50098	69.586	69.399	69.9	-0.25063					25	11	3	0	0	0	0.03519	1	8159	8159		94.006	19.751	1	119940	+		51915	22571	36208	36261	57215	57215		667			-0.05356760076733735
MLVEGFTSFY	10	Oxidation (M)	_M(Oxidation (M))LVEGFTSFY_					0	0	1			REV__ENSG00000120948|ENST00000240185|TARDBP	REV__ENSG00000120948|ENST00000240185|TARDBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	605.278457	1208.54236	-0.98759	-0.00059777	-8.5217	-0.005158	-9.5093	-0.0057558	606.2762034577787	70.058	0.37999	69.791	69.536	69.916	-0.26725	0.10241	-0.0032574	NaN	94.006	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122870	+		51916	22571	36208	36261				667			-0.05356760076733735
MLVFISITLNV	11	Unmodified	_MLVFISITLNV_					0	0	0		ENST00000298510.3_1_10:120927844-120927886:-|nuORF	ENST00000298510.3_1_10:120927844-120927886:-|nuORF	ENST00000298510.3_1_10:120927844-120927886:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	624.8782348632812	2	625.364867	1248.71518	0.4456	0.00027866	3.4094	0.0021321	3.855	0.0024108	625.3667577407482	105.93	0.40708	105.93	105.73	106.14	-0.0013123					29	14	3	0	0	0	0.024747	1	13547	13547		18.262	0	1	319780			51917	11874	36209	36262	57216	57216					0.10077231050490809
MLVGKDLKV	9	Oxidation (M)	_M(Oxidation (M))LVGKDLKV_		M(1)LVGKDLKV		M(53)LVGKDLKV	0	0	1		nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000553041.5_1_12:96394769-96402982:-|nuORF;ENST00000537111.6_1_12:96394769-96403848:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H	nc|ENSG00000111144|P09960-4|LTA4H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80364990234375	2	509.801903	1017.58925	0.60396	0.0003079	2.6714	0.0013619	3.2753	0.0016698	509.80316832379725	83.279	2.7899	83.067	81.496	84.286	-0.21159					160	64	4	0	0	0	0.5973	1	10047	10047		52.937	6.9645	1	1089300			51918	3089	36210	36263	57217	57217		113			0.08116144265056846
MLVGNLRPC	9	Unmodified	_MLVGNLRPC_					0	0	0			REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.784423828125	2	501.764797	1001.51504	0.20869	0.00010471	3.6979	0.0018555	3.9066	0.0019602	501.76632780210093	72.048	0.67995	71.773	71.433	72.113	-0.2751					34	16	3	0	0	0	0.024325	1	8468	8468		50.025	0	1	656550	+		51919	29159	36211	36264	57218	57218					0.0143447790189839
MLVICIIGLV	10	Unmodified	_MLVICIIGLV_					0	0	0			REV__ENSG00000205810|ENST00000396439|KLRC3;REV__ENSG00000183542|ENST00000309384|KLRC4	REV__ENSG00000205810|ENST00000396439|KLRC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3232421875	2	537.326699	1072.63885	-1.1421	-0.00061369	-3.5689	-0.0019176	-4.711	-0.0025313	537.3234218713836	82.643	1.491	82.669	82.106	83.597	0.026329					141	34	6	0	0	0	0.47568	1	10280	10280		90.939	0	1	1565300	+		51920	28691;27580	36212	36265	57219	57219					0.10543135949501448
MLVIDDTPK	9	Unmodified	_MLVIDDTPK_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3;REV__nc|ENSG00000204256|P25440-4|BRD2	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.274658203125	2	516.275718	1030.53688	-0.61998	-0.00032008	3.27	0.0016882	2.65	0.0013682	516.2776483892452	45.313	0.33308	45.313	45.181	45.514	0					15	9	2	0	0	0	0.024381	1	4430	4430		37.159	18.056	1	312020	+		51921	26419;28579	36213	36266	57220	57220					0.02283561131434908
MLVIDDTPK	9	Unmodified	_MLVIDDTPK_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3;REV__nc|ENSG00000204256|P25440-4|BRD2	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.275718	1030.53688	-0.52442	-0.00027074	-0.59259	-0.00030594	-1.117	-0.00057668	516.2752527915625	45.427	0.26996	45.328	45.154	45.424	-0.099449	0.030335	-0.0012708	NaN	34.173	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143710	+		51922	26419;28579	36213	36266							0.02283561131434908
MLVIDDTPK	9	Unmodified	_MLVIDDTPK_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3;REV__nc|ENSG00000204256|P25440-4|BRD2	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.275718	1030.53688	0.016869	8.7089E-06	-0.91584	-0.00047283	-0.89897	-0.00046412	516.2746178384959	45.609	0.37	45.356	45.124	45.494	-0.25252	0.058934	-0.0016046	NaN	34.173	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142290	+		51923	26419;28579	36213	36266							0.02283561131434908
MLVIDDTPK	9	Unmodified	_MLVIDDTPK_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3;REV__nc|ENSG00000204256|P25440-4|BRD2	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.275718	1030.53688	-0.47449	-0.00024497	0.91309	0.00047141	0.4386	0.00022644	516.2754708711641	45.46	0.32824	45.249	45.121	45.449	-0.21109	-0.048544	0.00028391	NaN	34.173	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142540	+		51924	26419;28579	36213	36266							0.02283561131434908
MLVKGLFGT	9	Unmodified	_MLVKGLFGT_					0	0	0			REV__ENST00000547411.1_1_12:29302213-29449968:+|nuORF	REV__ENST00000547411.1_1_12:29302213-29449968:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2784118652344	2	483.278063	964.541574	0.10143	4.9018E-05	1.7267	0.00083448	1.8281	0.00088349	483.2789944074833	94.34	1.8423	94.192	93.392	95.234	-0.14771					94	42	4	0	0	0	0.98697	1	11608	11608		23.042	1.0826	1	1094700	+		51925	20294	36214	36267	57221	57221					0.05788490064878715
MLVLFYLQ	8	Unmodified	_MLVLFYLQ_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.831298828125	2	513.788264	1025.56198	-0.52596	-0.00027023	-3.6404	-0.0018704	-4.1664	-0.0021406	513.786405053661	67.157	0.44244	67.157	66.883	67.326	0					18	10	2	0	0	0	0.027866	1	8027	8027		69.093	0	1	263480			51926	2932	36215	36268	57222	57222					0.05021660724673893
MLVLGVSSSI	10	Oxidation (M)	_M(Oxidation (M))LVLGVSSSI_		M(1)LVLGVSSSI		M(48)LVLGVSSSI	0	0	1			REV__ENST00000547146.6_1_7:86813892-86824453:+|nuORF	REV__ENST00000547146.6_1_7:86813892-86824453:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2887573242188	2	511.283543	1020.55253	-0.95014	-0.00048579	1.8574	0.00094967	0.90728	0.00046388	511.2819150096111	83.876	0.6082	83.903	83.598	84.206	0.026558					49	13	5	0	0	0	0.9856	1	10423	10423		47.916	7.343	1	1413000	+		51927	34861	36216	36269	57223	57223		947			0.04307847648499319
MLVLGYNRKN	10	Unmodified	_MLVLGYNRKN_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;ENST00000479187.5_1_12:40760824-40760887:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.1874694824219	3	403.225381	1206.65431	0.36161	0.00014581	-0.5801	-0.00023391	-0.2185	-8.8104E-05	403.55966932570277	36.447	0.42811	36.242	36.056	36.484	-0.20518					18	10	2	0	0	0	0.03519	1	2884	2884		30.318	6.9398	1	270120			51928	9764	36217	36270	57224	57224					0.05925138790917117
MLVNAVLSLL	10	Unmodified	_MLVNAVLSLL_					0	0	0			REV__ENSG00000160318|ENST00000291715|CLDND2	REV__ENSG00000160318|ENST00000291715|CLDND2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3113403320312	2	536.825378	1071.6362	-0.59486	-0.00031934	2.6614	0.0014287	2.0665	0.0011094	536.8273841748112	97.385	0.93489	97.385	96.836	97.771	0					40	20	3	0	0	0	0.03519	1	12376	12376		15.642	0	1	97717	+		51929	25311	36218	36271	57225	57225					0.10325003816205935
MLVNFLVTKKT	11	Unmodified	_MLVNFLVTKKT_					0	0	0		nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.3053283691406	3	431.92482	1292.75263	0.032707	1.4127E-05	-1.1384	-0.00049171	-1.1057	-0.00047758	431.92406510959205	75.557	1.9078	75.298	74.949	76.856	-0.25865					64	46	2	0	0	0	0.02473	1	8900	8900		21.032	9.0999	1	265700			51930	18774	36219	36272	57226	57226					0.11796322316081387
MLVNFLVTKKT	11	Unmodified	_MLVNFLVTKKT_					0	0	0		nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	431.92482	1292.75263	-0.65909	-0.00028468	-0.50596	-0.00021854	-1.165	-0.00050321	432.2590706213139	75.535	1.5702	75.535	75.269	76.84	0	0.14868	0.00050415	NaN	21.032	63	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413280			51931	18774	36219	36272							0.11796322316081387
MLVNFLVTKKT	11	Unmodified	_MLVNFLVTKKT_					0	0	0		nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	nc|ENSG00000254658|Q8NGG1|OR8J2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	431.92482	1292.75263	0.075185	3.2474E-05	-1.1395	-0.00049217	-1.0643	-0.0004597	432.25894185002676	75.597	1.8254	75.325	75.018	76.843	-0.27266	-0.061127	-0.00031676	NaN	21.032	60	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370990			51932	18774	36219	36272							0.11796322316081387
MLVNILSKT	9	Unmodified	_MLVNILSKT_					0	0	0		ENSG00000176198|ENST00000641082|OR11H4;nc|ENSG00000176198|Q8NGC9|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.80389404296875	2	509.801903	1017.58925	0.28849	0.00014708	3.1095	0.0015852	3.398	0.0017323	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.70156	1	10557	10557		45.972	3.4978	1	3441300			51933	8618	36220	36273	57227	57227					0.08116144265068215
MLVNIQTEN	9	Unmodified	_MLVNIQTEN_					0	0	0		ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.2704467773438	2	531.268424	1060.5223	0.019572	1.0398E-05	0.96709	0.00051378	0.98666	0.00052418	531.2687948345032	74.655	0.87583	74.396	74.028	74.904	-0.25887					63	20	5	0	0	0	0.72494	1	9108	9108		44.377	0.75114	1	1422200			51934	9681	36221	36274	57228	57228					-0.005545110167076928
MLVNLKVN	8	Unmodified	_MLVNLKVN_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.8047180175781	2	465.775688	929.536823	-0.23842	-0.00011105	1.1289	0.00052581	0.89047	0.00041476	465.775531745183	84.283	0.49959	84.283	84.128	84.628	0					17	11	2	0	0	0	0.027866	1	10569	10569		31.955	20.444	1	139250			51935	5370	36222	36275	57229	57229					0.06923605922099796
MLVPLAGVLV	10	Unmodified	_MLVPLAGVLV_					0	0	0		ENST00000351989.7_1_22:20073964-20074003:+|nuORF	ENST00000351989.7_1_22:20073964-20074003:+|nuORF	ENST00000351989.7_1_22:20073964-20074003:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3196105957031	2	506.317189	1010.61982	-0.55107	-0.00027902	3.6416	0.0018438	3.0905	0.0015648	506.3190420082053	52.995	1.092	52.995	52.634	53.726	0					93	29	5	0	0	0	0.88914	2	5690	5690;5726		54.765	4.7401	1	10675000			51936	12600	36223	36276	57230;57231	57230					0.1149392265010647
MLVPLAGVLV	10	Unmodified	_MLVPLAGVLV_					0	0	0		ENST00000351989.7_1_22:20073964-20074003:+|nuORF	ENST00000351989.7_1_22:20073964-20074003:+|nuORF	ENST00000351989.7_1_22:20073964-20074003:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3196716308594	2	506.317189	1010.61982	-0.49543	-0.00025085	3.6916	0.0018691	3.1961	0.0016183	506.3190492521723	53.076	1.0665	52.929	52.645	53.711	-0.14723					82	28	4	0	0	0	1.0111	1	5684	5684		44.531	2.1349	1	10306000			51937	12600	36223	36276	57232	57232					0.1149392265010647
MLVPLAGVLV	10	Unmodified	_MLVPLAGVLV_					0	0	0		ENST00000351989.7_1_22:20073964-20074003:+|nuORF	ENST00000351989.7_1_22:20073964-20074003:+|nuORF	ENST00000351989.7_1_22:20073964-20074003:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.32012939453125	2	506.317189	1010.61982	-0.017754	-8.9894E-06	3.1059	0.0015726	3.0881	0.0015636	506.3187884606247	52.871	1.0949	52.967	52.641	53.736	0.095669					90	29	5	0	0	0	0.88914	1	5603	5603		54.765	3.4292	1	10947000			51938	12600	36223	36276	57233	57233					0.1149392265010647
MLVPRKMSV	9	Unmodified	_MLVPRKMSV_					0	0	0		ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8018188476562	2	530.803922	1059.59329	-0.041966	-2.2276E-05	-4.3971	-0.002334	-4.4391	-0.0023563	530.8014096275714	101.08	0.966	100.96	100.71	101.68	-0.12576					52	22	3	0	0	0	0.6504	1	12536	12536		49.442	3.4896	1	1241600			51939	8587	36224	36277	57234	57234					0.06587910487132831
MLVQLPLVV	9	Unmodified	_MLVQLPLVV_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532415.5_1_16:18477017-18479494:-|nuORF	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.31951904296875	2	506.317189	1010.61982	-0.017754	-8.9894E-06	3.1059	0.0015726	3.0881	0.0015636	506.3187884606247	52.871	1.0949	52.967	52.641	53.736	0.095669					90	29	5	0	0	0	0.29104	1	5634	5634		76.847	10.949	1	10947000	+		51940	19884;34581	36225	36278	57235	57235					0.11493922650117838
MLVSSTLIN	9	Unmodified	_MLVSSTLIN_					0	0	0			REV__ENST00000525002.5_1_6:135521662-135539115:+|nuORF	REV__ENST00000525002.5_1_6:135521662-135539115:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.25732421875	2	489.270435	976.526318	-0.9271	-0.0004536	-3.2838	-0.0016067	-4.2109	-0.0020603	489.268722959721	75.175	0.56718	75.175	74.914	75.481	0					23	14	2	0	0	0	0.02435	1	9229	9229		60.972	35.398	1	467050	+		51941	34405	36226	36279	57236	57236					0.03711578477020794
MLVVKRTEV	9	Unmodified	_MLVVKRTEV_					0	0	0			REV__ENSG00000115216|ENST00000379852|NRBP1	REV__ENSG00000115216|ENST00000379852|NRBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.3038330078125	2	537.820627	1073.6267	-0.59271	-0.00031877	-4.0856	-0.0021973	-4.6783	-0.0025161	537.8189473169658	86.125	0.12978	86.08	85.99	86.119	-0.045105					4	2	2	0	0	0	0.023239	1	10783	10783		96.19	19.416	1	12074	+		51942	22177	36227	36280	57237	57237					0.09283235530688216
MLWEVLAP	8	Unmodified	_MLWEVLAP_					0	0	0		ENST00000413366.7_1_17:64803214-64803382:+|nuORF	ENST00000413366.7_1_17:64803214-64803382:+|nuORF	ENST00000413366.7_1_17:64803214-64803382:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2882385253906	2	479.756964	957.499375	0.17694	8.4887E-05	-3.8384	-0.0018415	-3.6614	-0.0017566	479.75486977189087	66.032	0.63975	65.759	65.464	66.103	-0.27283					35	16	3	0	0	0	0.027866	1	7813	7813		35.201	29.643	1	587540			51943	13840	36228	36281	57238	57238					0.018925146564811257
MLWGLLLPG	9	Unmodified	_MLWGLLLPG_					0	0	0		ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7640075683594	2	500.288431	998.562309	0.025933	1.2974E-05	4.4254	0.002214	4.4513	0.0022269	500.79203280670686	42.83	0.468	42.83	42.534	43.002	0					21	12	3	0	0	0	0.024475	1	3975	3975		29.842	5.6388	1	306190			51944	10926	36229	36282	57239	57239					0.06297080444551284
MLWPEAPV	8	Unmodified	_MLWPEAPV_					0	0	0			REV__ENST00000487651.5_1_7:100457471-100457768:+|nuORF	REV__ENST00000487651.5_1_7:100457471-100457768:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7715759277344	2	471.741314	941.468075	-0.2736	-0.00012907	-3.7605	-0.001774	-4.0341	-0.001903	471.7399110719285	39.96	0.22429	39.848	39.792	40.016	-0.11223					8	5	2	0	0	0	0.027866	1	3463	3463		37.028	5.0736	1	63664	+		51945	33616	36230	36283	57240	57240					-0.0050005837759954375
MLWPSDLN	8	Unmodified	_MLWPSDLN_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7908935546875	2	488.233853	974.453153	-1.1445	-0.0005588	3.8754	0.0018921	2.7309	0.0013333	488.2359315898476	83.515	1.1607	83.541	83.173	84.334	0.026558					66	26	3	0	0	0	0.027866	1	10386	10386		52.299	4.3836	1	1513700	+		51946	28077	36231	36284	57241	57241					-0.03509550245587434
MLYAGPTEVQW	11	Unmodified	_MLYAGPTEVQW_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.8114624023438	2	647.810456	1293.60636	-2.445	-0.0015839	3.4452	0.0022318	1.0001	0.0006479	647.8127220537594	62.792	1.6359	62.571	62.237	63.873	-0.22097					94	43	4	0	0	0	0.51994	1	7068	7068		75.043	6.1972	1	14041000			51947	10169	36232	36285	57242	57242					-0.028699799197738685
MLYAGPTEVQW	11	Unmodified	_MLYAGPTEVQW_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	647.8126831054688	2	647.810456	1293.60636	-0.23617	-0.00015299	0.81623	0.00052876	0.58006	0.00037577	647.810981527909	62.734	1.7846	62.55	62.185	63.97	-0.18386					103	50	3	0	0	0	0.51994	1	7064	7064		75.043	13.352	1	10315000			51948	10169	36232	36285	57243	57243					-0.028699799197738685
MLYAGPTEVQW	11	Unmodified	_MLYAGPTEVQW_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	647.8119506835938	2	647.810456	1293.60636	-0.76603	-0.00049625	2.2998	0.0014898	1.5338	0.00099358	647.8119789604525	62.913	1.5886	62.654	62.368	63.956	-0.25824					104	43	4	0	0	0	0.82076	1	7070	7070		56.434	0	1	11044000			51949	10169	36232	36285	57244	57244					-0.028699799197738685
MLYELIEK	8	Unmodified	_MLYELIEK_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8209228515625	2	519.780636	1037.54672	-1.1206	-0.00058246	3.9691	0.0020631	2.8485	0.0014806	519.7823672434743	80.964	0.7655	80.988	80.852	81.617	0.023911					26	18	2	0	0	0	0.027866	1	10024	10024		45.952	1.8352	1	213840			51950	7084	36233	36286	57245	57245					0.029447491368500778
MLYELIGAM	9	Unmodified	_MLYELIGAM_					0	0	0			REV__ENSG00000203727|ENST00000367474|SAMD5	REV__ENSG00000203727|ENST00000367474|SAMD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8209228515625	2	520.761389	1039.50822	-1.0854	-0.00056525	2.7885	0.0014521	1.7031	0.00088689	521.2654495642114	81.004	0.5531	81.028	80.735	81.288	0.023903					19	13	2	0	0	0	0.024386	1	10024	10024		42.474	0	1	112160	+		51951	28541	36234	36287	57246	57246					-0.00994879769336876
MLYHFVNKHFI	11	Unmodified	_MLYHFVNKHFI_					0	0	0			REV__nc|ENSG00000204084|P32019-3|INPP5B	REV__nc|ENSG00000204084|P32019-3|INPP5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.64666748046875	3	483.58843	1447.74346	0.16903	8.174E-05	1.294	0.00062575	1.463	0.00070749	483.58868462292213	46.925	0.74268	46.828	46.572	47.315	-0.096653					34	19	3	0	0	0	0.024772	1	4553	4553		14.694	0	1	290270	+		51952	28565	36235	36288	57247	57247					0.03749973750427671
MLYIAPLL	8	Unmodified	_MLYIAPLL_					0	0	0			REV__nc|ENSG00000171617|O14682-2|ENC1	REV__nc|ENSG00000171617|O14682-2|ENC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.2628173828125	2	467.277532	932.540511	0.32113	0.00015006	-2.5522	-0.0011926	-2.2311	-0.0010425	467.27637529840774	50.776	0.14587	50.5	50.37	50.516	-0.27643					5	3	2	0	0	0	0.027866	1	5148	5148		33.493	0	1	231540	+		51953	26585	36236	36289	57248	57248					0.07154275695961587
MLYIYVLYI	9	Unmodified	_MLYIYVLYI_					0	0	0		ENST00000493413.1_1_1:185934944-185947193:+|nuORF	ENST00000493413.1_1_1:185934944-185947193:+|nuORF	ENST00000493413.1_1_1:185934944-185947193:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.3446655273438	2	595.830129	1189.6457	-0.38204	-0.00022763	0.48766	0.00029056	0.10563	6.2935E-05	595.8302736096381	71.958	0.48981	71.752	71.536	72.026	-0.20613					18	11	2	0	0	0	0.024475	1	8395	8395		21.702	0.7554	1	122530			51954	15502	36237	36290	57249	57249					0.05846772101745046
MLYKASQFP	9	Unmodified	_MLYKASQFP_					0	0	0			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.7763671875	2	542.778428	1083.5423	-0.48424	-0.00026284	-3.239	-0.001758	-3.7232	-0.0020209	542.776579577496	67.98	1.5263	67.691	67.268	68.794	-0.28834					105	38	4	0	0	0	0.16468	1	8077	8077		96.19	5.8206	1	14879000	+		51955	22276	36238	36291	57250	57250					0.00387284713929148
MLYKASQFP	9	Unmodified	_MLYKASQFP_					0	0	0			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.7761840820312	2	542.778428	1083.5423	-0.4435	-0.00024072	-3.3778	-0.0018334	-3.8213	-0.0020741	542.7765201981401	67.725	1.4844	67.747	67.387	68.871	0.021263					110	38	5	0	0	0	0.20967	1	8010	8010		87.754	0.057861	1	13510000	+		51956	22276	36238	36291	57251	57251					0.00387284713929148
MLYKHKAD	8	Unmodified	_MLYKHKAD_					0	0	0			REV__IRS2|p.I113M|1|0.26|ENSG00000185950|chr13:109785715-109785715|G/C|missense_variant	REV__IRS2|p.I113M|1|0.26|ENSG00000185950|chr13:109785715-109785715|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.77984619140625	2	503.262945	1004.51134	-0.53423	-0.00026886	3.8797	0.0019525	3.3454	0.0016836	503.2652857069274	53.847	0.43497	53.7	53.42	53.855	-0.14723					18	11	2	0	0	0	0.027866	1	5781	5781		37.159	23.022	1	160410	+		51957	36154	36239	36292	57252	57252					0.009261313996830722
MLYKNIEA	8	Unmodified	_MLYKNIEA_					0	0	0			REV__FOXQ1|p.E147K|1|0.19|ENSG00000164379|chr6:1313143-1313143|G/A|missense_variant	REV__FOXQ1|p.E147K|1|0.19|ENSG00000164379|chr6:1313143-1313143|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7928161621094	2	491.257328	980.500103	-0.33342	-0.0001638	-3.9528	-0.0019419	-4.2863	-0.0021057	491.25571620393333	80.539	0.45676	80.539	80.289	80.746	0					13	10	2	0	0	0	0.027866	1	9995	9995		24.203	1.1603	1	80694	+		51958	36048	36240	36293	57253	57253					0.00907309305534909
MLYKNIEA	8	Unmodified	_MLYKNIEA_					0	0	0			REV__FOXQ1|p.E147K|1|0.19|ENSG00000164379|chr6:1313143-1313143|G/A|missense_variant	REV__FOXQ1|p.E147K|1|0.19|ENSG00000164379|chr6:1313143-1313143|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.257328	980.500103	-0.068164	-3.3486E-05	-3.5349	-0.0017366	-3.6031	-0.00177	491.2559543453951	80.976	0.41203	80.833	80.655	81.067	-0.14284	0.23308	-0.00024963	NaN	17.365	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53745	+		51959	36048	36240	36293							0.00907309305534909
MLYNFRDRQAK	11	Unmodified	_MLYNFRDRQAK_					0	0	0		nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2821044921875	3	481.250477	1440.7296	-0.93213	-0.00044859	4.2096	0.0020259	3.2774	0.0015773	481.25205108376497	46.329	0.62709	46.177	45.683	46.31	-0.15156					23	17	2	0	0	0	0.024834	1	4565	4565		5.4129	0	1	113960			51960	18838	36241	36294	57254	57254					0.026866962513395265
MLYSSSVSFF	10	Unmodified	_MLYSSSVSFF_					0	0	0			REV__VPS4A|p.D196Y|1|0.15|ENSG00000132612|chr16:69319509-69319509|G/T|missense_variant	REV__VPS4A|p.D196Y|1|0.15|ENSG00000132612|chr16:69319509-69319509|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.3766479492188	2	584.273175	1166.5318	-1.0326	-0.00060332	-1.38	-0.00080627	-2.4125	-0.0014096	584.2721445096455	46.263	0.34573	46.002	45.854	46.2	-0.26118					14	8	2	0	0	0	0.03519	1	4449	4449		44.117	0	1	140650	+		51961	37779	36242	36295	57255	57255					-0.044807427311525316
MLYTAIAF	8	Unmodified	_MLYTAIAF_					0	0	0		nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	nc|ENSG00000145740|Q8TAD4-2|SLC30A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.73162841796875	2	465.243689	928.472826	0.092405	4.2991E-05	4.1066	0.0019106	4.199	0.0019536	465.2454337455626	40.556	0.56001	40.579	40.237	40.797	0.023006					24	15	2	0	0	0	0.027866	1	3488	3488		21.702	0	1	1043400			51962	5835	36243	36296	57256	57256					0.005728257651526292
MLYTLLVGR	9	Unmodified	_MLYTLLVGR_					0	0	0		nc|ENSG00000173334|Q96RU8-2|TRIB1;ENSG00000173334|ENST00000311922|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	nc|ENSG00000173334|Q96RU8-2|TRIB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7899169921875	2	533.309895	1064.60524	-0.86884	-0.00046336	-4.2919	-0.0022889	-5.1607	-0.0027523	533.3072117089947	64.404	0.55444	64.142	63.939	64.494	-0.2626					31	14	3	0	0	0	0.024436	1	7542	7542		23.042	0	1	668220			51963	8367	36244	36297	57257	57257					0.07551850501977242
MLYVLPQNKV	10	Unmodified	_MLYVLPQNKV_					0	0	0			REV__ENSG00000113615|ENST00000398844|SEC24A	REV__ENSG00000113615|ENST00000398844|SEC24A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.53643798828125	3	402.230132	1203.66857	0.4487	0.00018048	1.0148	0.00040819	1.4635	0.00058868	402.2307093527839	35.264	0.7406	35.049	34.793	35.534	-0.21555					27	18	2	0	0	0	0.03519	1	2654	2654		28.081	0	1	236110	+		51964	22078	36245	36298	57258	57258					0.07487791219205064
MMADKKYK	8	Unmodified	_MMADKKYK_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7595520019531	2	507.759181	1013.50381	1.8368	0.00093265	-1.5438	-0.0007839	0.29297	0.00014876	507.758269010358	24.186	0.57016	24.005	23.759	24.329	-0.18089					36	12	4	0	0	0	0.81662	1	1014	1014		57.811	9.8957	1	1267200			51965	3670	36246	36299	57259	57259					-0.0024034419225245074
MMAWVMGMY	9	Unmodified	_MMAWVMGMY_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.309814453125	2	560.228344	1118.44214	-1.0817	-0.00060597	3.647	0.0020432	2.5654	0.0014372	560.2298075533979	51.503	0.26906	51.59	51.375	51.644	0.087006					14	7	3	0	0	0	0.024475	1	5358	5358		39.021	7.0666	1	161700	+		51966	28484	36247	36300	57260	57260					-0.11234735207381163
MMDATFSAVY	10	Oxidation (M)	_M(Oxidation (M))MDATFSAVY_		M(0.5)M(0.5)DATFSAVY		M(0)M(0)DATFSAVY	0	0	1		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.240966796875	2	576.241018	1150.46748	-0.89283	-0.00051448	-0.028424	-1.6379E-05	-0.92125	-0.00053086	576.2412409403925	68.846	1.9837	68.584	68.181	70.165	-0.26166					141	47	5	0	0	0	0.79525	4	7958	7947;7958;7994;8006		60.972	14.307	2	19993000			51967	7012	36248	36301	57261;57262;57263;57264	57262		291;292			-0.10173265879643623
MMDATFSAVY	10	Oxidation (M)	_MM(Oxidation (M))DATFSAVY_		M(0.147)M(0.853)DATFSAVY		M(-7.6)M(7.6)DATFSAVY	0	0	1		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.2412109375	2	576.241018	1150.46748	-0.023749	-1.3685E-05	-1.0239	-0.00059001	-1.0476	-0.0006037	576.2406530497246	68.815	1.9634	68.572	68.187	70.151	-0.24277					168	47	6	0	0	0	0.79525	1	7959	7959		60.972	9.6365	2	20901000			51968	7012	36248	36301	57265	57265		291;292			-0.10173265879643623
MMDATFSAVY	10	Oxidation (M)	_MM(Oxidation (M))DATFSAVY_		M(0.142)M(0.858)DATFSAVY		M(-7.8)M(7.8)DATFSAVY	0	0	1		ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	ENSG00000162928|ENST00000295030|PEX13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.2408447265625	2	576.241018	1150.46748	-0.12884	-7.4242E-05	-0.54721	-0.00031532	-0.67605	-0.00038957	576.2407423923137	68.81	1.9237	68.579	68.195	70.119	-0.23048					124	46	5	0	0	0	0.67706	2	7972	7948;7972		68.787	22.835	2	21653000			51969	7012	36248	36301	57266;57267	57267		291;292			-0.10173265879643623
MMDLMKRRS	9	Unmodified	_MMDLMKRRS_					0	0	0		ENST00000590156.5_1_18:43668092-43668176:-|nuORF;ENST00000433223.2_9:43400313-43400445:+|nuORF	ENST00000590156.5_1_18:43668092-43668176:-|nuORF	ENST00000590156.5_1_18:43668092-43668176:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.269287109375	2	584.293396	1166.57224	-0.73314	-0.00042837	1.5517	0.00090667	0.81861	0.00047831	584.2942074730985	77.739	0.42398	77.577	77.311	77.735	-0.16196					14	9	2	0	0	0	0.023837	1	9230	9230		84.916	19.112	1	91680			51970	14219	36249	36302	57268	57268					-0.004384228840308424
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.764892578125	2	621.765723	1241.51689	-1.6259	-0.001011	0.49385	0.00030706	-1.1321	-0.0007039	621.7659517554083	39.061	0.72566	38.838	38.538	39.263	-0.22311					58	19	4	0	0	0	0.27019	1	3283	3283		112.3	21.519	1	1811200			51971	4060	36250	36303	57269	57269					-0.09420557870816992
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	621.765723	1241.51689	-0.84066	-0.0005227	-0.22606	-0.00014056	-1.0667	-0.00066325	621.7654308131393	38.976	0.63789	38.811	38.515	39.153	-0.16458	-0.02821	8.6803E-05	NaN	112.3	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1689100			51972	4060	36250	36303							-0.09420557870816992
MMDPNSTQRY	10	Unmodified	_MMDPNSTQRY_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	621.765723	1241.51689	-0.0078194	-4.8618E-06	-1.1736	-0.00072972	-1.1814	-0.00073458	621.7650319382487	39.095	0.75499	38.87	38.562	39.317	-0.2257	0.030008	-0.0010915	NaN	112.3	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1561900			51973	4060	36250	36303							-0.09420557870816992
MMEQEIEE	8	Unmodified	_MMEQEIEE_					0	0	0		ENSG00000101109|ENST00000372806|STK4;ENST00000372801.5_1_20:43681806-43703814:+|nuORF	ENSG00000101109|ENST00000372806|STK4	ENSG00000101109|ENST00000372806|STK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8206787109375	2	519.70955	1037.40455	-1.034	-0.00053739	-1.6048	-0.00083405	-2.6388	-0.0013714	519.7088705339489	80.893	0.6001	80.741	80.514	81.114	-0.15168					19	14	2	0	0	0	0.027866	1	10041	10041		60.972	5.4677	1	155240			51974	2281	36251	36304	57270	57270					-0.1126583166767432
MMEQKQVVPP	10	Unmodified	_MMEQKQVVPP_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.801577	1185.5886	-0.22649	-0.00013449	0.20419	0.00012125	-0.022304	-1.3244E-05	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.941	1	2740	2740		51.335	3.6781	1	111520000			51975	7106	36252	36305	57271	57271					0.0032298155369971937
MMGAPNLIAD	10	Unmodified	_MMGAPNLIAD_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.748046875	2	516.74627	1031.47799	0.38612	0.00019953	2.4788	0.0012809	2.865	0.0014805	516.747421130384	63.713	0.98812	63.455	63.162	64.15	-0.25824					74	25	4	0	0	0	0.83673	1	7193	7193		58.23	7.0372	1	4591400			51976	2428;15719	36253	36306	57272	57272					-0.03649238434513791
MMHLGYEKMA	10	Unmodified	_MMHLGYEKMA_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.7739868164062	2	605.774505	1209.53446	0.24949	0.00015113	-0.98456	-0.00059642	-0.73508	-0.00044529	605.7737629045049	69.883	2.2667	69.59	67.896	70.163	-0.29292					146	59	4	0	0	0	0.57825	1	8395	8395		79.451	9.8234	1	2444800			51977	8540	36254	36307	57273	57273					-0.06192933869510853
MMIMGCIFY	9	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))IMGCIFY_		M(0.93)M(0.993)IM(0.077)GCIFY		M(11)M(21)IM(-11)GCIFY	0	0	2		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.2355346679688	2	570.73346	1139.45237	-0.51074	-0.0002915	-0.54896	-0.00031331	-1.0597	-0.00060481	570.7316598095706	69.591	1.209	69.324	68.912	70.121	-0.26724					90	28	6	0	0	0	0.48384	1	8082	8082		60.404	13.637	3	1363700			51978	4938	36255	36308	57274	57274		201;202			-0.1117817227282103
MMIMGCIFY	9	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))IMGCIFY_		M(0.993)M(0.993)IM(0.014)GCIFY		M(21)M(21)IM(-21)GCIFY	0	0	2		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.2357177734375	2	570.73346	1139.45237	0.24845	0.0001418	-1.1097	-0.00063332	-0.86122	-0.00049152	571.2342038432577	69.541	1.2393	69.29	68.824	70.063	-0.25063					101	29	6	0	0	0	0.48384	1	8080	8080		60.404	7.0522	3	1817800			51979	4938	36255	36308	57275	57275		201;202			-0.1117817227282103
MMKKLSKG	8	Unmodified	_MMKKLSKG_					0	0	0			REV__ENST00000431461.1_1_6:110530298-110530412:+|nuORF	REV__ENST00000431461.1_1_6:110530298-110530412:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7643127441406	2	461.764266	921.513979	-0.59485	-0.00027468	1.2841	0.00059295	0.68925	0.00031827	461.7647036992018	21.7	1.2853	21.7	21.146	22.432	0					51	26	3	0	0	0	0.99042	1	703	703		38.806	3.6054	1	659160	+		51980	32366	36256	36309	57276	57276					0.050082635329886216
MMKKNQTMIS	10	3 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))KKNQTM(Oxidation (M))IS_		M(1)M(1)KKNQTM(1)IS		M(50)M(50)KKNQTM(50)IS	0	0	3		nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	630.2913208007812	2	630.293259	1258.57196	-0.7985	-0.00050329	-1.8553	-0.0011694	-2.6538	-0.0016726	630.2920401633795	17.276	0.50152	17.069	16.913	17.414	-0.20669					14	9	2	0	0	0	0.96822	1	154	154		49.536	6.6718	1	134430			51981	18343	36257	36310	57277	57277		570;571;572			-0.04697887394559075
MMKKRGVVY	9	Unmodified	_MMKKRGVVY_					0	0	0			REV__ENSG00000004948|ENST00000426151|CALCR	REV__ENSG00000004948|ENST00000426151|CALCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.311279296875	2	556.309372	1110.60419	0.48029	0.00026719	2.4151	0.0013435	2.8954	0.0016107	556.3105078755358	72.705	0.69378	72.424	72.18	72.873	-0.28124					38	16	4	0	0	0	0.55828	2	8819	8819;8831		55.504	7.5886	1	903050	+		51982	19790	36258	36311	57278;57279	57278					0.053313128614263405
MMKKRGVVY	9	Unmodified	_MMKKRGVVY_					0	0	0			REV__ENSG00000004948|ENST00000426151|CALCR	REV__ENSG00000004948|ENST00000426151|CALCR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	556.309372	1110.60419	0.48029	0.00026719	2.4151	0.0013435	2.8954	0.0016107	556.3105078755358	72.705	0.69378	72.424	72.18	72.873	-0.28124	0.033076	5.6317E-05	NaN	55.504	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	903050	+		51983	19790	36258	36311							0.053313128614263405
MMKKVKKRM	9	2 Oxidation (M)	_MM(Oxidation (M))KKVKKRM(Oxidation (M))_		M(0.132)M(0.868)KKVKKRM(1)		M(-8.2)M(8.2)KKVKKRM(74)	0	0	2		ENST00000552147.5_3_12:76442186-76444321:-|nuORF;ENST00000552056.5_1_12:76441358-76444342:-|nuORF	ENST00000552147.5_3_12:76442186-76444321:-|nuORF	ENST00000552147.5_3_12:76442186-76444321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.34130859375	2	606.342889	1210.67122	-2.1228	-0.0012871	0.061309	3.7174E-05	-2.0614	-0.0012499	606.3427096228446	75.323	0.96356	75.323	74.955	75.918	0					61	25	4	0	0	0	0.31247	1	9254	9254		73.975	28.023	3	1638600			51984	16614	36259	36312	57280	57280		537;538			0.07431600080872158
MMKKVKKRM	9	2 Oxidation (M)	_MM(Oxidation (M))KKVKKRM(Oxidation (M))_					0	0	2		ENST00000552147.5_3_12:76442186-76444321:-|nuORF;ENST00000552056.5_1_12:76441358-76444342:-|nuORF	ENST00000552147.5_3_12:76442186-76444321:-|nuORF	ENST00000552147.5_3_12:76442186-76444321:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	606.342889	1210.67122	-0.73139	-0.00044347	-1.2857	-0.00077955	-2.017	-0.001223	606.3418907246466	75.558	1.0688	75.314	74.918	75.987	-0.24455	-0.0047811	-0.00092835	NaN	73.975	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1534600			51985	16614	36259	36312				537;538			0.07431600080872158
MMKLNLGLPS	10	Unmodified	_MMKLNLGLPS_					0	0	0			REV__ENST00000552687.6_1_12:56332455-56333318:+|nuORF	REV__ENST00000552687.6_1_12:56332455-56333318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7962036132812	2	552.301213	1102.58787	-0.079423	-4.3865E-05	-2.0112	-0.0011108	-2.0906	-0.0011547	552.300121578064	57.855	1.1911	57.855	57.227	58.418	0					41	31	2	0	0	0	0.03519	1	6515	6515		45.972	20.522	1	1937200	+		51986	34958	36260	36313	57281	57281					0.04068186904646609
MMKLNLGLPS	10	Unmodified	_MMKLNLGLPS_					0	0	0			REV__ENST00000552687.6_1_12:56332455-56333318:+|nuORF	REV__ENST00000552687.6_1_12:56332455-56333318:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.301213	1102.58787	-0.0064546	-3.5649E-06	-0.98442	-0.0005437	-0.99088	-0.00054726	552.3007519958693	57.657	0.38151	57.482	57.19	57.571	-0.1749	-0.28786	0.0028298	NaN	54.776	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277940	+		51987	34958	36260	36313							0.04068186904646609
MMLDDLLQL	9	Oxidation (M)	_M(Oxidation (M))MLDDLLQL_		M(0.723)M(0.277)LDDLLQL		M(4.2)M(-4.2)LDDLLQL	0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.2761840820312	2	554.27486	1106.53517	0.022028	1.221E-05	-0.033292	-1.8453E-05	-0.011264	-6.2434E-06	554.2745250491448	97.764	1.2788	97.764	97.325	98.604	0					52	29	3	0	0	0	0.34489	2	12472	12472;12497		69.628	10.846	2	178160			51988	4914	36261	36314	57282;57283	57282		199			-0.013838159488159363
MMLDDLLQL	9	Oxidation (M)	_M(Oxidation (M))MLDDLLQL_		M(0.756)M(0.244)LDDLLQL		M(4.9)M(-4.9)LDDLLQL	0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.2750244140625	2	554.27486	1106.53517	0.11722	6.4974E-05	-0.27034	-0.00014984	-0.15311	-8.4867E-05	554.2743167913636	97.618	1.1211	97.627	97.192	98.313	0.0089111					58	25	3	0	0	0	0.2508	1	12420	12420		82.241	13.454	2	171350			51989	4914	36261	36314	57284	57284		199			-0.013838159488159363
MMLDDLLQL	9	Oxidation (M)	_M(Oxidation (M))MLDDLLQL_		M(0.733)M(0.267)LDDLLQL		M(4.4)M(-4.4)LDDLLQL	0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.2765502929688	2	554.27486	1106.53517	0.72968	0.00040444	-0.86504	-0.00047947	-0.13536	-7.5026E-05	554.2740796710519	97.925	1.0696	97.923	97.322	98.392	-0.0020752					60	24	3	0	0	0	0.32811	1	12439	12439		71.877	15.156	2	226120			51990	4914	36261	36314	57285	57285		199			-0.013838159488159363
MMLLIWLQ	8	Oxidation (M)	_MM(Oxidation (M))LLIWLQ_		M(0.125)M(0.875)LLIWLQ		M(-8.4)M(8.4)LLIWLQ	0	0	1		ENST00000478268.1_1_21:42801350-42801404:+|nuORF	ENST00000478268.1_1_21:42801350-42801404:+|nuORF	ENST00000478268.1_1_21:42801350-42801404:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.289794921875	2	532.287574	1062.56059	0.20847	0.00011097	-0.91285	-0.0004859	-0.70438	-0.00037494	532.2869816566283	77.258	0.75473	76.996	76.644	77.399	-0.26202					33	18	2	0	0	0	0.71717	1	9190	9190		65.897	10.393	2	787880			51991	15138	36262	36315	57286	57286		517			0.03181703364271016
MMLLSAWPL	9	Unmodified	_MMLLSAWPL_					0	0	0		ENST00000423485.5_1_17:38561113-38562661:-|nuORF	ENST00000423485.5_1_17:38561113-38562661:-|nuORF	ENST00000423485.5_1_17:38561113-38562661:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8173217773438	2	531.279749	1060.54494	0.34043	0.00018086	-4.0841	-0.0021698	-3.7437	-0.0019889	531.2792200755873	88.505	0.43129	88.523	88.281	88.713	0.018547					13	9	2	0	0	0	0.024412	1	11046	11046		31.955	0	1	48151			51992	14025	36263	36316	57287	57287					0.01709416847211287
MMLPSFIPL	9	Unmodified	_MMLPSFIPL_					0	0	0			REV__nc|ENSG00000140836|Q15911-2|ZFHX3	REV__nc|ENSG00000140836|Q15911-2|ZFHX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.8358764648438	2	524.782124	1047.5497	-1.5118	-0.00079336	4.4406	0.0023303	2.9288	0.001537	524.7843137715571	60.565	0.62707	60.565	60.294	60.921	0					31	16	2	0	0	0	0.024262	1	6994	6994		47.916	0	1	1708400	+		51993	24044	36264	36317	57288	57288					0.02782300989997566
MMLSLELSN	9	Unmodified	_MMLSLELSN_					0	0	0		ENST00000296786.7_1_5:158696059-158696960:+|nuORF	ENST00000296786.7_1_5:158696059-158696960:+|nuORF	ENST00000296786.7_1_5:158696059-158696960:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.324462890625	2	519.253928	1036.4933	-0.61633	-0.00032003	3.9384	0.0020451	3.3221	0.001725	519.7552647251118	40.007	1.9121	39.894	39.15	41.062	-0.11223					76	52	3	0	0	0	0.024447	1	3657	3657		32.812	10.853	1	199100			51994	11854	36265	36318	57289	57289					-0.023483716373220886
MMLSLELSN	9	Unmodified	_MMLSLELSN_					0	0	0		ENST00000296786.7_1_5:158696059-158696960:+|nuORF	ENST00000296786.7_1_5:158696059-158696960:+|nuORF	ENST00000296786.7_1_5:158696059-158696960:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.253928	1036.4933	-0.16302	-8.4647E-05	3.0498	0.0015836	2.8867	0.0014989	519.7556042157987	39.744	0.91969	39.744	39.495	40.414	0	-0.074996	-0.00044614	NaN	32.812	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410110			51995	11854	36265	36318							-0.023483716373220886
MMNQTFRLV	9	Unmodified	_MMNQTFRLV_					0	0	0			REV__nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	REV__nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2909545898438	2	570.288637	1138.56272	-0.037685	-2.1491E-05	3.0659	0.0017485	3.0282	0.001727	570.2903150734486	73.842	0.70317	73.577	73.058	73.761	-0.26479					42	17	4	0	0	0	0.33245	1	8707	8707		71.296	10.324	1	1504700	+		51996	23106	36266	36319	57290	57290					-0.00101867897910779
MMQVHGSKSD	10	Unmodified	_MMQVHGSKSD_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.265869140625	2	560.249708	1118.48486	-1.0561	-0.00059165	-1.2578	-0.00070471	-2.3139	-0.0012964	560.2493672229331	83.825	0.73204	83.735	83.385	84.117	-0.090454					23	16	2	0	0	0	0.03519	1	10459	10459		60.118	0	1	65830			51997	1792	36267	36320	57291	57291					-0.06963925553941408
MMRRKILP	8	Unmodified	_MMRRKILP_					0	0	0		ENST00000461017.1_1_7:66262429-66264389:+|nuORF	ENST00000461017.1_1_7:66262429-66264389:+|nuORF	ENST00000461017.1_1_7:66262429-66264389:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2513427734375	2	522.812082	1043.60961	-0.2836	-0.00014827	-1.2736	-0.00066587	-1.5572	-0.00081414	522.8119658204062	35.074	0.62712	34.859	34.589	35.216	-0.21555					28	15	3	0	0	0	0.027866	1	2638	2638		13.775	0	1	163870			51998	14671	36268	36321	57292	57292					0.08955036443899189
MMTINNLDGSQ	11	Unmodified	_MMTINNLDGSQ_					0	0	0		ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.5788879394531	3	408.518012	1222.53221	0.53673	0.00021927	1.2368	0.00050524	1.7735	0.00072451	408.853217667554	34.247	0.26543	34.243	34.071	34.336	-0.0045624					9	6	2	0	0	0	0.024726	1	2513	2513		20.315	12.51	1	35862			51999	3225	36269	36322	57293	57293					-0.07015691073638664
MMTKDTAIE	9	Oxidation (M)	_MM(Oxidation (M))TKDTAIE_		M(0.004)M(0.996)TKDTAIE		M(-24)M(24)TKDTAIE	0	0	1		ENST00000556392.5_1_14:50159826-50218487:+|nuORF	ENST00000556392.5_1_14:50159826-50218487:+|nuORF	ENST00000556392.5_1_14:50159826-50218487:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.23974609375	2	528.241018	1054.46748	-0.63625	-0.00033609	-2.5767	-0.0013611	-3.2129	-0.0016972	528.2394985697882	67.637	3.6181	67.637	66.41	70.029	0					256	93	4	0	0	0	0.39228	1	8136	8136		66.429	7.6473	2	5184300			52000	16708	36270	36323	57294	57294		540			-0.057572658796289033
MMTPQVITPQ	10	Unmodified	_MMTPQVITPQ_					0	0	0		nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000128573|O15409-2|FOXP2;nc|ENSG00000128573|O15409-5|FOXP2;ENST00000459666.5_1_7:114066566-114268765:+|nuORF;nc|ENSG00000128573|O15409-7|FOXP2;nc|ENSG00000128573|O15409-6|FOXP2;ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2	nc|ENSG00000285708|Q9H334-7|FOXP1;nc|ENSG00000128573|O15409-5|FOXP2	nc|ENSG00000285708|Q9H334-7|FOXP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.2865600585938	2	573.288302	1144.56205	-0.26161	-0.00014998	-2.6847	-0.0015391	-2.9463	-0.0016891	573.286727820033	64.276	0.92892	64.014	63.684	64.613	-0.2626					51	24	3	0	0	0	1.0236	1	7527	7527		42.864	5.7052	1	1174800			52001	3391;4296	36271	36324	57295	57295					-0.004447073376240951
MMVLNPASTV	10	Unmodified	_MMVLNPASTV_					0	0	0			REV__ENST00000301608.8_3_17:73951714-73951753:-|nuORF	REV__ENST00000301608.8_3_17:73951714-73951753:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.7686157226562	2	531.769745	1061.52494	-1.4277	-0.00075923	2.6059	0.0013857	1.1781	0.0006265	531.7705013811631	40.545	0.65579	40.315	39.968	40.624	-0.23021					47	17	4	0	0	0	0.64538	1	3508	3508		71.877	1.0613	1	3126400	+		52002	30059	36272	36325	57296	57296					-0.003363788833894432
MMVLQENGY	9	Unmodified	_MMVLQENGY_					0	0	0		nc|ENSG00000164037|Q4ZJI4-2|SLC9B1;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1;ENSG00000164037|ENST00000296422|SLC9B1;ENST00000503584.5_1_4:103832673-103853413:-|nuORF	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.311279296875	2	542.743728	1083.4729	-0.20778	-0.00011277	0.81137	0.00044037	0.60359	0.00032759	542.7441204710312	70.92	0.63237	70.648	70.471	71.103	-0.27185					25	14	2	0	0	0	0.024477	1	8282	8282		27.882	0	1	650300			52003	7192	36273	36326	57297	57297					-0.06549542297125299
MMVPRNEAL	9	2 Oxidation (M)	_M(Oxidation (M))M(Oxidation (M))VPRNEAL_		M(1)M(1)VPRNEAL		M(71)M(71)VPRNEAL	0	0	2			REV__PTPDC1|p.S641Gfs*7|1|0.12|ENSG00000158079|chr9:94101631-94101640|ATGCAGCTTG/-|frameshift_variant	REV__PTPDC1|p.S641Gfs*7|1|0.12|ENSG00000158079|chr9:94101631-94101640|ATGCAGCTTG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.7647705078125	2	546.762452	1091.51035	-0.61128	-0.00033422	3.5325	0.0019314	2.9212	0.0015972	546.7642626089242	67.43	1.3937	67.454	66.769	68.163	0.023911					76	34	4	0	0	0	0.33245	1	7956	7956		71.296	14.575	1	4219500	+		52004	25171	36274	36327	57298	57298		746;747			-0.031744510315093066
MMYLQLSV	8	Oxidation (M)	_MM(Oxidation (M))YLQLSV_		M(0.001)M(0.999)YLQLSV		M(-30)M(30)YLQLSV	0	0	1			REV__ENST00000560141.2_1_15:45024324-45024492:+|nuORF	REV__ENST00000560141.2_1_15:45024324-45024492:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.74560546875	2	500.745739	999.476925	-0.31894	-0.00015971	0.55104	0.00027593	0.23211	0.00011623	500.7459488157	53.077	1.3175	52.887	52.43	53.747	-0.18982					94	35	4	0	0	0	0.37125	1	5524	5524		101.21	15.852	2	8293900	+		52005	35137	36275	36328	57299	57299		951			-0.022834528034081814
MNAPGCGHTV	10	Unmodified	_MNAPGCGHTV_					0	0	0		ENST00000425923.1_1_5:131657926-131660304:+|nuORF	ENST00000425923.1_1_5:131657926-131660304:+|nuORF	ENST00000425923.1_1_5:131657926-131660304:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.77911376953125	2	493.712762	985.410971	0.44427	0.00021934	-1.8712	-0.00092382	-1.4269	-0.00070448	493.7118021221065	57.431	0.53723	57.256	57.034	57.571	-0.1749					20	13	2	0	0	0	0.03519	1	6428	6428		60.118	32.236	1	102300			52006	14075	36276	36329	57300	57300					-0.08231848925618124
MNAVVYLGD	9	Unmodified	_MNAVVYLGD_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2767639160156	2	491.239135	980.463718	-0.93661	-0.0004601	1.2226	0.00060059	0.28599	0.00014049	491.2403792384757	40.184	0.51648	40.207	39.977	40.494	0.023006					26	13	3	0	0	0	0.02435	1	3497	3497		42.396	0	1	103160			52007	6366	36277	36330	57301	57301					-0.027295675911773287
MNCRAAYLTV	10	Unmodified	_MNCRAAYLTV_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;EFCAB7|p.R456Efs*3|1|0.19|ENSG00000203965|chr1:63561721-63561722|-/A|frameshift_variant	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.2769165039062	2	571.278269	1140.54198	-0.82668	-0.00047226	-0.23893	-0.00013649	-1.0656	-0.00060876	571.2779654702867	62.329	0.39684	62.089	61.897	62.293	-0.23926					24	11	3	0	0	0	0.66532	1	7232	7232		69.628	4.1622	1	2722000			52008	10290	36278	36331	57302	57302					-0.022664582776087627
MNCRAAYLTV	10	Unmodified	_MNCRAAYLTV_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;EFCAB7|p.R456Efs*3|1|0.19|ENSG00000203965|chr1:63561721-63561722|-/A|frameshift_variant	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.2780151367188	2	571.278269	1140.54198	-1.7304	-0.00098856	-0.1219	-6.9639E-05	-1.8523	-0.0010582	571.2781030474115	62.102	0.39643	62.165	61.876	62.272	0.062767					18	10	2	0	0	0	0.61732	1	7138	7138		75.043	3.7476	1	2228400			52009	10290	36278	36331	57303	57303					-0.022664582776087627
MNCRAAYLTV	10	Unmodified	_MNCRAAYLTV_					0	0	0		nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7;EFCAB7|p.R456Efs*3|1|0.19|ENSG00000203965|chr1:63561721-63561722|-/A|frameshift_variant	nc|ENSG00000203965|A8K855-2|EFCAB7	nc|ENSG00000203965|A8K855-2|EFCAB7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	571.278269	1140.54198	-1.801	-0.0010289	1.1975	0.00068408	-0.60358	-0.00034481	571.2787759030887	62.181	0.40704	62.181	61.906	62.313	0	0.035663	0.0010333	NaN	75.043	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1800800			52010	10290	36278	36331							-0.022664582776087627
MNDVSPLFVD	10	Unmodified	_MNDVSPLFVD_					0	0	0			REV__ENST00000474494.1_1_2:97373418-97377633:-|nuORF	REV__ENST00000474494.1_1_2:97373418-97377633:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.3002319335938	2	568.768257	1135.52196	-0.78616	-0.00044714	2.7594	0.0015695	1.9732	0.0011223	568.769864387748	67.177	0.57542	67.2	66.855	67.43	0.023911					21	13	2	0	0	0	0.03519	1	7899	7899		75.043	22.107	1	151270	+		52011	22158	36279	36332	57304	57304					-0.040379307365356
MNEPCKKCIIA	11	Unmodified	_MNEPCKKCIIA_					0	0	0			REV__ENST00000518319.5_1_8:94767110-94770759:+|nuORF	REV__ENST00000518319.5_1_8:94767110-94770759:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.206787109375	3	417.208233	1248.60287	-0.81549	-0.00034023	-2.6578	-0.0011089	-3.4733	-0.0014491	417.20708049099443	26.523	0.82728	26.287	26.007	26.834	-0.23603					67	21	4	0	0	0	1.0074	1	1400	1400		35.178	0	1	3419100	+		52012	34229	36280	36333	57305	57305					-0.011486892896527934
MNFILSPSLD	10	Unmodified	_MNFILSPSLD_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.3110961914062	2	568.78645	1135.55835	0.75993	0.00043224	1.7977	0.0010225	2.5576	0.0014547	568.7874014629566	58.927	0.54974	58.74	58.386	58.936	-0.18705					21	14	2	0	0	0	0.03519	1	6662	6662		71.877	0	1	212970			52013	8441	36281	36334	57306	57306					-0.004010538398233621
MNGCVSLTMY	10	Oxidation (M)	_MNGCVSLTM(Oxidation (M))Y_		MNGCVSLTM(1)Y		M(-130)NGCVSLTM(130)Y	0	0	1			REV__ENST00000541777.6_1_19:53117849-53117960:-|nuORF	REV__ENST00000541777.6_1_19:53117849-53117960:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.7999267578125	2	567.735045	1133.45554	0.14477	8.2192E-05	2.0762	0.0011787	2.2209	0.0012609	567.7362665815577	71.084	1.6244	70.827	70.468	72.092	-0.25713					55	39	2	0	0	0	0.03519	1	8337	8337		136.27	64.972	2	202250	+		52014	34780	36282	36335	57307	57307		944			-0.10585205894471983
MNHIVMEIDQ	10	Unmodified	_MNHIVMEIDQ_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.8862609863281	3	410.526619	1228.55803	0.64542	0.00026496	-0.014163	-5.8142E-06	0.63125	0.00025915	410.5264743241621	34.167	0.65854	34.167	33.894	34.552	0					38	16	3	0	0	0	0.03519	1	2587	2587		19.263	5.8086	1	494950			52015	4832	36283	36336	57308	57308					-0.04710796831341213
MNHIVMEIDQ	10	Unmodified	_MNHIVMEIDQ_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	410.526619	1228.55803	0.35164	0.00014436	0.23751	9.7504E-05	0.58915	0.00024186	410.52654644527684	33.965	0.58328	33.961	33.715	34.298	-0.0045624	-0.0036155	-0.0002497	NaN	19.263	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506520			52016	4832	36283	36336							-0.04710796831341213
MNHIVMEIDQ	10	Unmodified	_MNHIVMEIDQ_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	410.526619	1228.55803	0.12228	5.02E-05	0.92377	0.00037923	1.0461	0.00042943	410.5266010458268	34.125	0.69476	33.901	33.485	34.179	-0.22412	-0.063382	0.00059549	NaN	19.263	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269720			52017	4832	36283	36336							-0.04710796831341213
MNHIVMEIDQ	10	Unmodified	_MNHIVMEIDQ_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	410.526619	1228.55803	-0.017482	-7.1769E-06	0.80686	0.00033124	0.78938	0.00032406	410.5267470381946	34.053	0.53283	33.846	33.472	34.005	-0.20696	-0.11791	0.0004515	NaN	19.263	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396090			52018	4832	36283	36336							-0.04710796831341213
MNHIVMEIDQ	10	Unmodified	_MNHIVMEIDQ_					0	0	0		nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	nc|ENSG00000134824|O95864-3|FADS2	nc|ENSG00000134824|O95864-3|FADS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	410.526619	1228.55803	-1.0245	-0.00042057	1.8851	0.00077389	0.86064	0.00035331	410.52728687290335	34.074	0.74509	33.898	33.507	34.252	-0.17557	-0.066048	0.0017794	NaN	19.263	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289800			52019	4832	36283	36336							-0.04710796831341213
MNHMASHPV	9	Unmodified	_MNHMASHPV_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2530517578125	2	512.228579	1022.44261	-0.1719	-8.8054E-05	4.1761	0.0021391	4.0042	0.0020511	512.231379141293	53.913	0.23457	54.011	53.842	54.077	0.098015					8	6	2	0	0	0	0.024405	1	5762	5762		27.882	11.409	1	167970			52020	8856	36284	36337	57309	57309					-0.06771856171678792
MNIQILED	8	Unmodified	_MNIQILED_					0	0	0		ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.77960205078125	2	488.244418	974.474282	0.43293	0.00021138	-4.1759	-0.0020389	-3.743	-0.0018275	488.2422855495087	75.428	0.44279	75.253	74.986	75.429	-0.17548					21	10	3	0	0	0	0.027866	1	8920	8920		51.335	5.3835	1	328010			52021	7844	36285	36338	57310	57310					-0.013975849367398041
MNITGQPLTT	10	Unmodified	_MNITGQPLTT_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2783813476562	2	538.276249	1074.53795	0.18264	9.8313E-05	3.6397	0.0019591	3.8223	0.0020575	538.2781490363919	84.615	1.9371	84.411	84.038	85.975	-0.20329					109	45	5	0	0	0	0.58878	1	10265	10265		78.264	4.0087	1	5261900	+		52022	23340	36286	36339	57311	57311					0.0036577550035872264
MNIVECEV	8	Unmodified	_MNIVECEV_					0	0	0			REV__nc|ENSG00000168291|P11177-3|PDHB	REV__nc|ENSG00000168291|P11177-3|PDHB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.26885986328125	2	468.711896	935.409239	-0.34382	-0.00016115	0.37935	0.0001778	0.035525	1.6651E-05	468.7120269850149	60.672	0.37018	60.459	60.273	60.643	-0.2134					17	9	2	0	0	0	0.027866	1	6956	6956		27.882	0	1	163850	+		52023	26245	36287	36340	57312	57312					-0.061049027342505724
MNKLATAMQEG	11	Oxidation (M)	_M(Oxidation (M))NKLATAMQEG_		M(1)NKLATAMQEG		M(58)NKLATAM(-58)QEG	0	0	1		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.2865600585938	2	605.283748	1208.55294	-0.29963	-0.00018136	3.8406	0.0023247	3.541	0.0021433	605.2858867234773	57.688	0.93591	57.498	57.042	57.978	-0.19017					73	24	5	0	0	0	0.31805	1	6300	6300		88.177	26.486	2	4871800			52024	10381	36288	36341	57313	57313		440			-0.04299100693970104
MNKLATAMQEG	11	Oxidation (M)	_M(Oxidation (M))NKLATAMQEG_					0	0	1		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	605.283748	1208.55294	-1.2693	-0.00076827	4.8301	0.0029236	3.5608	0.0021553	605.2864507080474	57.36	0.63786	57.36	57.003	57.641	0	-0.12004	0.00056823	NaN	88.177	51	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2809900			52025	10381	36288	36341				440			-0.04299100693970104
MNKLATAMQEG	11	Oxidation (M)	_M(Oxidation (M))NKLATAMQEG_					0	0	1		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	605.283748	1208.55294	-0.053991	-3.268E-05	3.4967	0.0021165	3.4427	0.0020838	605.2857570567427	57.634	0.75246	57.459	57.072	57.825	-0.1749	-0.020957	-0.001046	NaN	88.177	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2363400			52026	10381	36288	36341				440			-0.04299100693970104
MNKLATAMQEG	11	Oxidation (M)	_M(Oxidation (M))NKLATAMQEG_					0	0	1		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	605.283748	1208.55294	-1.5844	-0.00095902	5.2722	0.0031912	3.6878	0.0022321	605.2867849092917	57.305	0.6336	57.4	57.014	57.647	0.095306	-0.079917	0.0011034	NaN	88.177	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2516800			52027	10381	36288	36341				440			-0.04299100693970104
MNKLVVVIF	9	Unmodified	_MNKLVVVIF_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ENST00000533107.3_1_19:1799652-1806029:-|nuORF;ENST00000531925.5_1_19:1789538-1806275:-|nuORF	nc|ENSG00000130270|O60423-3|ATP8B3;ENST00000531925.5_1_19:1789538-1806275:-|nuORF	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.800537109375	2	531.822638	1061.63072	-0.45744	-0.00024328	0.43084	0.00022913	-0.0266	-1.4146E-05	531.823751913196	56.734	0.19506	56.832	56.752	56.947	0.097893					7	5	2	0	0	0	0.024294	1	6286	6286		45.952	12.436	1	130390			52028	4405;16275	36289	36342	57314	57314					0.10237325024377242
MNKPFLEP	8	Unmodified	_MNKPFLEP_					0	0	0		nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7514343261719	2	488.252046	974.489538	-0.59172	-0.00028891	-0.80152	-0.00039135	-1.3932	-0.00068026	488.25171356817253	29.212	3.9385	29.215	26.802	30.741	0.0031376					219	98	6	0	0	0	0.77775	1	1730	1730		60.972	5.4677	1	6146300			52029	18046	36290	36343	57315	57315					0.0012732665110206653
MNLILWGKG	9	Unmodified	_MNLILWGKG_					0	0	0		TM9SF2|p.E459K|1|0.14|ENSG00000125304|chr13:99552213-99552213|G/A|missense_variant	TM9SF2|p.E459K|1|0.14|ENSG00000125304|chr13:99552213-99552213|G/A|missense_variant	TM9SF2|p.E459K|1|0.14|ENSG00000125304|chr13:99552213-99552213|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.7634887695312	2	516.288963	1030.56337	-0.24083	-0.00012434	-1.123	-0.00057979	-1.3638	-0.00070412	516.2883450216552	67.833	0.57628	67.852	67.466	68.042	0.018913					27	14	2	0	0	0	0.023635	1	7976	7976		56.721	18.91	1	274360			52030	38078	36291	36344	57316	57316					0.04931294813445675
MNLKVMLL	8	Unmodified	_MNLKVMLL_					0	0	0		ENST00000528824.1_1_1:99150558-99150591:+|nuORF	ENST00000528824.1_1_1:99150558-99150591:+|nuORF	ENST00000528824.1_1_1:99150558-99150591:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.28271484375	2	481.282292	960.55003	0.86517	0.00041639	-0.81575	-0.00039261	0.049414	2.3782E-05	481.28176877309755	51.789	1.0556	51.605	51.298	52.354	-0.18405					63	27	4	0	0	0	0.59392	1	5329	5329		76.847	0	1	2977200			52031	16193	36292	36345	57317	57317					0.06817720709841524
MNLLSLANED	10	Unmodified	_MNLLSLANED_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000474637.5_1_9:128108952-128125022:+|nuORF	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8316650390625	2	560.271164	1118.52777	-0.28234	-0.00015819	3.6979	0.0020718	3.4155	0.0019136	560.273070101375	78.354	0.86582	78.354	78.001	78.867	0					31	20	2	0	0	0	0.03519	1	9755	9755		88.177	42.205	1	185230			52032	7383	36293	36346	57318	57318					-0.0267483222487499
MNLSKPHLT	9	Unmodified	_MNLSKPHLT_					0	0	0		ENST00000487587.2_1_20:43603030-43603105:+|nuORF	ENST00000487587.2_1_20:43603030-43603105:+|nuORF	ENST00000487587.2_1_20:43603030-43603105:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	520.78369140625	2	520.781502	1039.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.14	1	107.14	106.64	107.64	0								0	0	0	0.56426	1	13761	13761		44.377	5.571	1				52033	15370	36294	36347	57319	57319					0.03025802945421674
MNLVTLILE	9	Unmodified	_MNLVTLILE_					0	0	0		ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2978515625	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.033448	4	10922	10899;10911;10922;10934		138.83	20.082	1	11993000			52034	16664	36295	36348	57320;57321;57322;57323	57322					0.06840724545213561
MNLVTLILE	9	Unmodified	_MNLVTLILE_					0	0	0		ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3004150390625	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.057894	4	10870	10870;10882;10893;10905		125.81	18.807	1	10615000			52035	16664	36295	36348	57324;57325;57326;57327	57324					0.06840724545213561
MNLVTLILE	9	Unmodified	_MNLVTLILE_					0	0	0		ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2974243164062	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.057894	2	10835	10823;10835		125.81	11.811	1	11897000			52036	16664	36295	36348	57328;57329	57329					0.06840724545213561
MNLVTLILE	9	Unmodified	_MNLVTLILE_					0	0	0		ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.302490234375	2	523.301736	1044.58892	0.47324	0.00024765	2.705	0.0014155	3.1782	0.0016632	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.14024	1	10551	10551		101.6	0	1	13836000			52037	16664	36295	36348	57330	57330					0.06840724545213561
MNLVTLILE	9	Unmodified	_MNLVTLILE_					0	0	0		ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	ENST00000554882.5_1_14:31576440-31576804:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3021850585938	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.057894	1	10536	10536		125.81	6.2572	1	14210000			52038	16664	36295	36348	57331	57331					0.06840724545213561
MNLYDHELV	9	Unmodified	_MNLYDHELV_					0	0	0		ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.2901000976562	2	567.268424	1132.5223	-0.22613	-0.00012828	0.59906	0.00033983	0.37292	0.00021155	567.2687360302035	58.009	1.2731	58.009	57.835	59.108	0					58	34	2	0	0	0	0.024427	1	6683	6683		42.396	10.866	1	342800			52039	2911	36296	36349	57332	57332					-0.03866511016713048
MNNAQRIE	8	Unmodified	_MNNAQRIE_					0	0	0		nc|ENSG00000130377|Q5FVE4-4|ACSBG2;nc|ENSG00000130377|Q5FVE4-3|ACSBG2;ENST00000591741.5_1_19:6161567-6190665:+|nuORF;nc|ENSG00000130377|Q5FVE4-2|ACSBG2;ENSG00000130377|ENST00000588485|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7909851074219	2	488.237458	974.460364	-0.80071	-0.00039094	-3.1889	-0.0015569	-3.9896	-0.0019479	488.23574126598385	83.596	0.94864	83.596	83.266	84.215	0					52	21	3	0	0	0	0.027866	1	10443	10443		66.429	22.052	1	1354700			52040	4415	36297	36350	57333	57333					-0.027888176451710933
MNNRQSILT	9	Unmodified	_MNNRQSILT_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8626708984375	2	538.77949	1075.54443	-1.4772	-0.00079586	-3.7845	-0.002039	-5.2616	-0.0028348	538.7776034258551	80.59	0.87985	80.439	79.8	80.68	-0.15169					28	20	2	0	0	0	0.024354	1	9981	9981		30.504	8.5438	1	366130	+		52041	27146	36298	36351	57334	57334					0.009677134517232844
MNPQQVQIK	9	Unmodified	_MNPQQVQIK_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.337158203125	2	543.292233	1084.56991	-1.0524	-0.00057177	0.80193	0.00043568	-0.2505	-0.00013609	543.7953028205358	48.832	0.53678	48.68	48.433	48.97	-0.15277					24	14	2	0	0	0	0.023817	1	4955	4955		51.335	0	1	247080	+		52042	37137	36299	36352	57335	57335					0.031011879741527082
MNQMQQIET	9	Unmodified	_MNQMQQIET_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.2990112304688	2	561.749541	1121.48453	-0.48604	-0.00027303	1.763	0.00099038	1.277	0.00071734	562.2524741756486	65.248	0.51409	65.286	65.045	65.559	0.037384					33	14	3	0	0	0	0.024427	1	7655	7655		34.173	0	1	611190			52043	2876	36300	36353	57336	57336					-0.07135345273786697
MNQQNPQAPQ	10	Unmodified	_MNQQNPQAPQ_					0	0	0		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.294677734375	2	578.264204	1154.51386	-0.54686	-0.00031623	0.42051	0.00024317	-0.12635	-7.3065E-05	578.2643791503366	83.069	0.21386	82.931	82.867	83.081	-0.1386					6	4	2	0	0	0	0.03519	1	10017	10017		27.882	6.9353	1	84005			52044	2350	36301	36354	57337	57337					-0.057220649333203255
MNQRNGYGR	9	Unmodified	_MNQRNGYGR_					0	0	0			REV__ENSG00000089289|ENST00000356413|IGBP1	REV__ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.8260498046875	2	548.259256	1094.50396	-0.85167	-0.00046694	-0.32644	-0.00017898	-1.1781	-0.00064591	548.2592671908579	94.629	0.51524	94.633	94.363	94.878	0.0041199					34	11	4	0	0	0	0.024457	1	11953	11953		21.96	8.5058	1	102660	+		52045	20852	36302	36355	57338	57338					-0.03951208148032492
MNQVNTNGGAM	11	Unmodified	_MNQVNTNGGAM_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.7449340820312	2	568.74479	1135.47503	-0.49746	-0.00028293	0.20231	0.00011506	-0.29516	-0.00016787	568.7448979988617	24.725	1.4218	24.804	24.455	25.877	0.078344					71	32	3	0	0	0	0.99553	1	1045	1045		37.812	4.9991	1	2385100	+		52046	20736	36303	36356	57339	57339					-0.08729113559343205
MNRAREKN	8	Unmodified	_MNRAREKN_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.32635498046875	2	509.764175	1017.5138	0.20408	0.00010403	1.3935	0.00071034	1.5976	0.00081437	510.2661045853171	77.692	0.66901	77.482	76.995	77.664	-0.21087					21	15	2	0	0	0	0.027866	1	9592	9592		54.776	10.66	1	259790	+		52047	22521	36304	36357	57340	57340					0.005739798573472399
MNRDAMSAM	9	Unmodified	_MNRDAMSAM_					0	0	0			REV__ENSG00000174460|ENST00000310164|ZCCHC12	REV__ENSG00000174460|ENST00000310164|ZCCHC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3031005859375	2	513.711904	1025.40926	0.013378	6.8722E-06	-3.5227	-0.0018096	-3.5093	-0.0018028	513.7098497770244	37.412	0.27626	37.219	37.114	37.39	-0.193					10	6	2	0	0	0	0.024457	1	2995	2995		29.15	17.639	1	73767	+		52048	26865	36305	36358	57341	57341					-0.10243226005900397
MNRDDQGIM	9	Unmodified	_MNRDDQGIM_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2339477539062	2	540.234058	1078.45356	-0.98358	-0.00053136	0.37628	0.00020328	-0.6073	-0.00032809	540.2342969035095	26.695	1.6262	26.672	26.243	27.869	-0.023088					122	41	5	0	0	0	0.31037	1	1388	1388		74.255	6.7614	1	6429000	+		52049	21324	36306	36359	57342	57342					-0.08252498588058188
MNRDDQGIM	9	Unmodified	_MNRDDQGIM_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.233642578125	2	540.234058	1078.45356	-1.0465	-0.00056534	0.36712	0.00019833	-0.67935	-0.00036701	540.2342793222425	26.308	1.3828	26.389	26.01	27.392	0.081293					113	34	5	0	0	0	0.42604	2	1270	1270;1294		64.207	4.089	1	5038300	+		52050	21324	36306	36359	57343;57344	57343					-0.08252498588058188
MNRENEFYN	9	Unmodified	_MNRENEFYN_					0	0	0			REV__CCDC181|p.K369Rfs*6|1|0.28|ENSG00000117477|chr1:169419122-169419122|T/-|frameshift_variant	REV__CCDC181|p.K369Rfs*6|1|0.28|ENSG00000117477|chr1:169419122-169419122|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	608.8324584960938	2	608.756212	1215.49787	-0.60005	-0.00036528	-2.0079	-0.0012223	-2.6079	-0.0015876	608.7561803268155	81.702	0.21089	81.473	81.353	81.564	-0.2289					6	4	2	0	0	0	0.024541	1	9806	9806		16.473	0	1	31887	+		52051	19257	36307	36360	57345	57345					-0.1012577117019191
MNSFNTDED	9	Unmodified	_MNSFNTDED_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2;ENST00000466642.5_2_2:64084828-64111237:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.6962280273438	2	536.698029	1071.3815	-1.5336	-0.00082307	-2.8554	-0.0015325	-4.389	-0.0023556	536.696900866142	44.119	1.4438	43.975	43.534	44.978	-0.14471					101	41	5	0	0	0	0.37611	1	4165	4165		67.494	10.773	1	6708600			52052	7974	36308	36361	57346	57346					-0.15133134460756992
MNSGPPGLGGK	11	Unmodified	_MNSGPPGLGGK_					0	0	0		ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2922668457031	2	507.755484	1013.49641	-0.20731	-0.00010526	1.535	0.0007794	1.3277	0.00067414	508.25644335389876	52.166	0.21426	52.018	51.881	52.095	-0.14735					6	5	2	0	0	0	0.024771	1	5553	5553		28.081	1.3886	1	77438			52053	8862	36309	36362	57347	57347					-0.009793604682954538
MNSILKIVT	9	Unmodified	_MNSILKIVT_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.80303955078125	2	509.801903	1017.58925	0.56391	0.00028748	2.8432	0.0014495	3.4071	0.0017369	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.80003	1	10585	10585		39.253	1.4413	1	3699900			52054	8932	36310	36363	57348	57348					0.08116144265068215
MNTLRDLRQPK	11	Unmodified	_MNTLRDLRQPK_					0	0	0		ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8	ENSG00000204510|ENST00000697200|PRAMEF7	ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.77685546875	3	457.922361	1370.74525	0.12401	5.6786E-05	-1.7999	-0.00082423	-1.6759	-0.00076744	457.92130066414103	42.971	0.57894	42.832	42.521	43.1	-0.13929					30	15	3	0	0	0	0.024809	1	3953	3953		12.433	4.0256	1	284610			52055	9129	36311	36364	57349	57349					0.07470982768381873
MNTLRDLRQPK	11	Unmodified	_MNTLRDLRQPK_					0	0	0		ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8	ENSG00000204510|ENST00000697200|PRAMEF7	ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	457.922361	1370.74525	0.60649	0.00027772	-2.3898	-0.0010943	-1.7833	-0.00081662	457.9209642323979	42.858	0.50622	42.884	42.68	43.186	0.026012	0.026102	-0.00046242	NaN	8.4073	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290950			52056	9129	36311	36364							0.07470982768381873
MNTVRLSFF	9	Unmodified	_MNTVRLSFF_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8084106445312	2	557.789327	1113.5641	-0.20656	-0.00011522	1.5454	0.00086201	1.3388	0.00074679	557.7923583297979	52.298	0.22718	52.151	52.021	52.248	-0.14735					7	5	2	0	0	0	0.024319	1	5565	5565		56.721	13.07	1	111120	+		52057	20674	36312	36365	57350	57350					0.01186089462498785
MNVDQLALV	9	Unmodified	_MNVDQLALV_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7843933105469	2	501.76806	1001.52157	-0.22491	-0.00011285	-2.5636	-0.0012863	-2.7885	-0.0013992	501.7664901393785	71.871	0.76746	71.665	71.344	72.112	-0.20613					42	18	3	0	0	0	0.024261	1	8429	8429		64.207	21.811	1	737910	+		52058	27219	36313	36366	57351	57351					0.0208669433425257
MNVIDRKP	8	Unmodified	_MNVIDRKP_					0	0	0		nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;nc|ENSG00000274487|A6NEC2|NPEPPSL1;ENSG00000141279|ENST00000322157|NPEPPS	nc|ENSG00000274487|A6NEC2-2|NPEPPSL1	nc|ENSG00000274487|A6NEC2-2|NPEPPSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7843322753906	2	486.768394	971.522236	-0.1677	-8.1631E-05	-2.3224	-0.0011305	-2.4901	-0.0012121	486.7677749583698	100.92	0.42683	100.91	100.76	101.19	-0.0054474					11	9	2	0	0	0	0.027866	1	12826	12826		31.955	6.5047	1	137120			52059	5479	36314	36367	57352	57352					0.035335337739752504
MNWVRSMKV	9	Unmodified	_MNWVRSMKV_					0	0	0			REV__ENST00000460683.1_2_3:122437292-122437346:+|nuORF	REV__ENST00000460683.1_2_3:122437292-122437346:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.84326171875	2	575.796629	1149.5787	-0.10784	-6.2095E-05	4.2786	0.0024636	4.1708	0.0024015	575.7990494448286	88.556	0.88062	88.419	88.148	89.028	-0.13744					30	20	2	0	0	0	0.02366	1	10863	10863		72.879	25.222	1	235860	+		52060	32855	36315	36368	57353	57353					0.009898383389781884
MNYRQCQS	8	Unmodified	_MNYRQCQS_					0	0	0		ENST00000508671.1_1_12:92876430-92876604:+|nuORF	ENST00000508671.1_1_12:92876430-92876604:+|nuORF	ENST00000508671.1_1_12:92876430-92876604:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2608642578125	2	515.215669	1028.41678	-1.4841	-0.00076462	-2.3378	-0.0012045	-3.8218	-0.0019691	515.212974887387	30.082	0.24018	30.082	29.936	30.176	0					11	5	3	0	0	0	0.027866	1	1889	1889		29.15	13.508	1	73661			52061	15786	36316	36369	57354	57354					-0.09628750413958187
MNYSTSYLFEL	11	Unmodified	_MNYSTSYLFEL_					0	0	0			REV__ENSG00000117594|ENST00000367027|HSD11B1	REV__ENSG00000117594|ENST00000367027|HSD11B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.29498291015625	3	456.544444	1366.6115	-0.28673	-0.00013091	0.097108	4.4334E-05	-0.18963	-8.6573E-05	456.54436779427874	56.341	0.5809	56.185	55.887	56.468	-0.15601					37	15	3	0	0	0	0.024739	1	6232	6232		35.178	4.1101	1	856300	+		52062	22357	36317	36370	57355	57355					-0.05713720847870718
MNYSTSYLFEL	11	Unmodified	_MNYSTSYLFEL_					0	0	0			REV__ENSG00000117594|ENST00000367027|HSD11B1	REV__ENSG00000117594|ENST00000367027|HSD11B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	456.544444	1366.6115	-0.19918	-9.0936E-05	-0.36991	-0.00016888	-0.56909	-0.00025981	456.54430906840054	56.337	0.48071	56.18	55.972	56.453	-0.15656	-0.018134	-0.00030753	NaN	35.178	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140710	+		52063	22357	36317	36370							-0.05713720847870718
MNYSTSYLFEL	11	Unmodified	_MNYSTSYLFEL_					0	0	0			REV__ENSG00000117594|ENST00000367027|HSD11B1	REV__ENSG00000117594|ENST00000367027|HSD11B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	456.544444	1366.6115	0.19823	9.0502E-05	-0.47918	-0.00021877	-0.28095	-0.00012827	456.8784993562063	56.518	0.62118	56.306	56.001	56.623	-0.21281	0.1071	-0.00045719	NaN	35.178	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142450	+		52064	22357	36317	36370							-0.05713720847870718
MNYSTSYLFEL	11	Unmodified	_MNYSTSYLFEL_					0	0	0			REV__ENSG00000117594|ENST00000367027|HSD11B1	REV__ENSG00000117594|ENST00000367027|HSD11B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	456.544444	1366.6115	-0.02042	-9.3225E-06	-0.138	-6.3004E-05	-0.15842	-7.2327E-05	456.54420984152245	56.433	0.39543	56.208	56.069	56.464	-0.2248	0.0096031	1.0096E-05	NaN	35.178	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160450	+		52065	22357	36317	36370							-0.05713720847870718
MNYVEVHGVV	10	Unmodified	_MNYVEVHGVV_					0	0	0			REV__TRIM56|p.A608V|1|0.29|ENSG00000169871|chr7:101089135-101089135|C/T|missense_variant	REV__TRIM56|p.A608V|1|0.29|ENSG00000169871|chr7:101089135-101089135|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.7852172851562	2	573.784241	1145.55393	-0.26384	-0.00015139	2.2925	0.0013154	2.0287	0.001164	573.7853724337155	70.352	1.0686	70.352	70.116	71.185	0					63	27	3	0	0	0	0.80817	1	8510	8510		60.118	3.3972	1	2575100	+		52066	37729	36318	36371	57356	57356					-0.013025182627643517
MPAEEFRE	8	Unmodified	_MPAEEFRE_					0	0	0		nc|ENSG00000103037|Q8TBK2-2|SETD6;ENSG00000103037|ENST00000219315|SETD6;ENST00000427443.5_1_16:58550827-58552930:+|nuORF;ENST00000463954.1_1_16:58551888-58552930:+|nuORF	nc|ENSG00000103037|Q8TBK2-2|SETD6	nc|ENSG00000103037|Q8TBK2-2|SETD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3111267089844	2	504.726392	1007.43823	-0.9829	-0.00049609	-2.9356	-0.0014817	-3.9185	-0.0019778	504.724692365379	35.362	3.3211	35.341	33.015	36.336	-0.021763					178	88	3	0	0	0	0.027866	1	2680	2680		45.952	18.07	1	959410			52067	2457	36319	36372	57357	57357					-0.06519042113598061
MPALLSCLF	9	Unmodified	_MPALLSCLF_					0	0	0			REV__ENSG00000137726|ENST00000526014|FXYD6	REV__ENSG00000137726|ENST00000526014|FXYD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.75872802734375	2	497.758649	993.502746	-0.57196	-0.0002847	0.86589	0.000431	0.29392	0.0001463	497.75896069187917	60.601	1.3881	60.387	60	61.389	-0.2134					117	36	4	0	0	0	0.64155	1	6954	6954		50.025	5.9077	1	5971000	+		52068	23776	36320	36373	57358	57358					0.0057344143883710785
MPASLRQEL	9	Unmodified	_MPASLRQEL_					0	0	0		ENSG00000154240|ENST00000535342|CEP112;nc|ENSG00000154240|Q8N8E3-2|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3032836914062	2	522.778959	1043.54336	-0.96802	-0.00050606	-2.3028	-0.0012038	-3.2708	-0.0017099	522.7774362989178	29.628	1.0225	29.383	28.881	29.903	-0.24524					52	23	3	0	0	0	0.02435	1	1897	1897		51.335	3.6781	1	666080			52069	6393	36321	36374	57359	57359					0.023334990828288937
MPASLRQEL	9	Unmodified	_MPASLRQEL_					0	0	0		ENSG00000154240|ENST00000535342|CEP112;nc|ENSG00000154240|Q8N8E3-2|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.778959	1043.54336	-1.9085	-0.00099774	-6.9444	-0.0036304	-8.853	-0.0046281	523.2766986951577	29.549	0.36485	29.549	29.408	29.773	0	0.16211	-0.0039636	NaN	51.335	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71662			52070	6393	36321	36374							0.023334990828288937
MPCCFTQCL	9	2 Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))PCC(Carbamidomethyl (C))FTQC(Carbamidomethyl (C))L_	MPC(0.005)C(0.995)FTQC(1)L	M(1)PCCFTQCL	MPC(-23)C(23)FTQC(36)L	M(53)PCCFTQCL	0	2	1			REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	588.2229614257812	2	588.221248	1174.42794	-0.94255	-0.00055443	3.6772	0.002163	2.7346	0.0016086	588.2232007396209	84.68	0.90655	84.68	84.341	85.247	0					60	21	4	0	0	0	0.59099	1	10611	10611		53.351	8.3292	3	1898700	+		52071	30978	36322	36375	57360	57360	406;407	874			-0.15229432426349376
MPCCFTQCL	9	2 Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))PCC(Carbamidomethyl (C))FTQC(Carbamidomethyl (C))L_					0	2	1			REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	588.221248	1174.42794	-1.6509	-0.00097107	4.555	0.0026793	2.9041	0.0017083	588.2236886939593	84.625	1.0772	84.552	84.221	85.298	-0.072769	-0.009111	0.0015742	NaN	53.351	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1723400	+		52072	30978	36322	36375			406;407	874			-0.15229432426349376
MPCCFTQCL	9	2 Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))PCC(Carbamidomethyl (C))FTQC(Carbamidomethyl (C))L_					0	2	1			REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	588.221248	1174.42794	0.063576	3.7397E-05	2.6784	0.0015755	2.742	0.0016129	588.2226584898693	84.726	0.70549	84.523	84.253	84.958	-0.20329	-0.038684	-0.00063348	NaN	53.351	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510530	+		52073	30978	36322	36375			406;407	874			-0.15229432426349376
MPCCFTQCL	9	2 Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))PCC(Carbamidomethyl (C))FTQC(Carbamidomethyl (C))L_					0	2	1			REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	588.221248	1174.42794	-0.021611	-1.2712E-05	2.9247	0.0017203	2.903	0.0017076	588.2227875073577	84.644	0.58197	84.485	84.236	84.818	-0.15869	-0.075837	-0.0003438	NaN	53.351	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503040	+		52074	30978	36322	36375			406;407	874			-0.15229432426349376
MPCCFTQCL	9	2 Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))PCC(Carbamidomethyl (C))FTQC(Carbamidomethyl (C))L_					0	2	1			REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	REV__ENST00000366601.7_3_1:235611717-235612021:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	588.221248	1174.42794	-0.057116	-3.3597E-05	2.7593	0.0016231	2.7022	0.0015895	588.222628378532	84.679	0.74823	84.541	84.28	85.029	-0.13789	-0.020159	-0.00053836	NaN	53.351	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445580	+		52075	30978	36322	36375			406;407	874			-0.15229432426349376
MPCLPVLPSL	10	Unmodified	_MPCLPVLPSL_					0	0	0			REV__ENST00000361874.7_1_2:74588525-74588612:-|nuORF	REV__ENST00000361874.7_1_2:74588525-74588612:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2385864257812	2	535.292856	1068.57116	-1.048	-0.00056097	3.7434	0.0020038	2.6955	0.0014429	535.2950915352395	60.826	0.30149	60.826	60.619	60.921	0					10	7	2	0	0	0	0.03519	1	6988	6988		68.787	15.435	1	85704	+		52076	30954	36323	36376	57361	57361					0.039616860186924896
MPCSLTRSL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MPCSLTRSL_					1	0	0		ENST00000484770.1_1_10:97890462-97890561:+|nuORF	ENST00000484770.1_1_10:97890462-97890561:+|nuORF	ENST00000484770.1_1_10:97890462-97890561:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2577514648438	2	525.259545	1048.50454	-0.72492	-0.00038077	-2.3064	-0.0012114	-3.0313	-0.0015922	525.258155246414	63.253	1.1237	63.253	62.938	64.062	0					81	30	4	0	0	0	0.29158	1	7393	7393		76.774	7.928	1	5653900			52077	15313	36324	36377	57362	57362					-0.017775495432033495
MPDMNLIEP	9	Oxidation (M)	_MPDM(Oxidation (M))NLIEP_		MPDM(1)NLIEP		M(-36)PDM(36)NLIEP	0	0	1			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.243408203125	2	538.24356	1074.47257	-0.59003	-0.00031758	1.883	0.0010135	1.2929	0.00069591	538.2453152102514	55.755	1.2862	55.599	55.293	56.58	-0.15601					93	34	5	0	0	0	0.19099	1	6139	6139		90.37	8.1293	2	11106000	+		52078	25213	36325	36378	57363	57363		748			-0.06168962016977275
MPDVQTSLSP	10	Unmodified	_MPDVQTSLSP_					0	0	0			REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1	REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3042602539062	2	537.760432	1073.50631	0.34303	0.00018447	2.8487	0.0015319	3.1917	0.0017164	537.7617736323472	85.753	0.71397	85.753	85.5	86.214	0					28	16	2	0	0	0	0.03519	1	10824	10824		104.06	13.687	1	239630	+		52079	36534	36326	36379	57364	57364					-0.02750217253583287
MPEKRIDS	8	Unmodified	_MPEKRIDS_					0	0	0			REV__BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	REV__BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2710266113281	2	488.250034	974.485516	-0.25924	-0.00012657	-2.7327	-0.0013342	-2.992	-0.0014608	488.24852263899294	24.312	0.51418	24.096	23.822	24.336	-0.2151					17	11	2	0	0	0	0.027866	1	1039	1039		35.618	3.6634	1	79201	+		52080	19206	36327	36380	57365	57365					-0.0027476284260501416
MPELNVRLV	9	Unmodified	_MPELNVRLV_					0	0	0			REV__ENSG00000253276|ENST00000523505|CCDC71L	REV__ENSG00000253276|ENST00000523505|CCDC71L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.8047485351562	2	535.804977	1069.5954	-0.61941	-0.00033188	-0.14196	-7.6064E-05	-0.76138	-0.00040795	535.8049072078487	66.371	0.7664	66.09	65.56	66.326	-0.28148					36	20	2	0	0	0	0.35646	1	7871	7871		68.787	2.3575	1	13108000	+		52081	29037	36328	36381	57366	57366					0.06338662496591496
MPELNVRLV	9	Unmodified	_MPELNVRLV_					0	0	0			REV__ENSG00000253276|ENST00000523505|CCDC71L	REV__ENSG00000253276|ENST00000523505|CCDC71L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.8033447265625	2	535.804977	1069.5954	-0.72218	-0.00038695	-0.26902	-0.00014414	-0.99119	-0.00053109	535.8048402797197	66.038	0.96497	66.068	65.448	66.413	0.030098					44	27	2	0	0	0	0.35646	1	7782	7782		68.787	4.5796	1	12776000	+		52082	29037	36328	36381	57367	57367					0.06338662496591496
MPEPAKFAP	9	Unmodified	_MPEPAKFAP_					0	0	0		nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P	nc|ENSG00000220323|Q6DRA6|H2BC19P	nc|ENSG00000220323|Q6DRA6|H2BC19P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3293762207031	2	494.252046	986.489538	-0.10988	-5.4311E-05	3.2454	0.001604	3.1355	0.0015497	494.2536151580345	24.681	0.47739	24.506	24.21	24.688	-0.17484					17	10	3	0	0	0	0.024405	1	1063	1063		44.117	7.0883	1	69927			52083	18727	36329	36382	57368	57368					-0.004246733488912469
MPEVYGSSIN	10	Oxidation (M)	_M(Oxidation (M))PEVYGSSIN_		M(1)PEVYGSSIN		M(75)PEVYGSSIN	0	0	1			REV__nc|ENSG00000095002|P43246-2|MSH2	REV__nc|ENSG00000095002|P43246-2|MSH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2897338867188	2	556.750064	1111.48558	0.20814	0.00011588	-0.62442	-0.00034764	-0.41628	-0.00023176	557.2508226945736	67.524	0.43344	67.524	67.285	67.719	0					12	10	2	0	0	0	0.03519	1	8041	8041		75.043	16.261	1	106720	+		52084	20954	36330	36383	57369	57369		642			-0.06570807633238473
MPFGLRFF	8	Unmodified	_MPFGLRFF_					0	0	0			REV__ENSG00000104044|ENST00000354638|OCA2	REV__ENSG00000104044|ENST00000354638|OCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8002014160156	2	507.765123	1013.51569	0.35363	0.00017956	1.6703	0.0008481	2.0239	0.0010277	507.7659152452494	51.908	0.58836	51.724	51.374	51.963	-0.18404					28	15	2	0	0	0	0.027866	1	5359	5359		65.897	0	1	287010	+		52085	21412	36331	36384	57370	57370					0.009476406132534976
MPFHPVTA	8	Unmodified	_MPFHPVTA_					0	0	0		ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2686462402344	2	450.225831	898.437109	-1.0581	-0.00047637	-1.05	-0.00047275	-2.1081	-0.00094912	450.2245330052868	38.04	0.29723	38.04	37.869	38.166	0					17	8	3	0	0	0	0.027866	1	3173	3173		46.766	0	1	128390			52086	2177	36332	36385	57371	57371					-0.01617211691848297
MPFPGPLLG	9	Unmodified	_MPFPGPLLG_					0	0	0		nc|ENSG00000102145|P15976-3|GATA1;ENSG00000102145|ENST00000376670|GATA1	nc|ENSG00000102145|P15976-3|GATA1	nc|ENSG00000102145|P15976-3|GATA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.26092529296875	2	464.751682	927.48881	0.6498	0.00030199	3.5936	0.0016701	4.2434	0.0019721	464.7529723240554	59.684	0.34031	59.507	59.401	59.741	-0.1761					11	8	2	0	0	0	0.024389	1	6644	6644		29.842	0	1	107390			52087	2386	36333	36386	57372	57372					0.022165320020803847
MPFQHWTHG	9	Unmodified	_MPFQHWTHG_					0	0	0		ENST00000347140.7_1_12:57789546-57789576:-|nuORF	ENST00000347140.7_1_12:57789546-57789576:-|nuORF	ENST00000347140.7_1_12:57789546-57789576:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.8074951171875	2	570.755818	1139.49708	0.5462	0.00031174	4.0028	0.0022846	4.549	0.0025964	570.758474292829	73.993	0.47057	73.993	73.828	74.298	0					13	10	2	0	0	0	0.024262	1	9036	9036		47.916	22.342	1	109980			52088	12569	36334	36387	57373	57373					-0.06708521028599534
MPGLFLFAL	9	Unmodified	_MPGLFLFAL_					0	0	0			REV__ENSG00000179600|ENST00000621500|GPHB5	REV__ENSG00000179600|ENST00000621500|GPHB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7676086425781	2	504.782982	1007.55141	0.08305	4.1922E-05	0.32068	0.00016187	0.40373	0.0002038	504.7826579050588	63.674	0.52015	63.416	63.313	63.833	-0.25824					21	13	2	0	0	0	0.024389	1	7185	7185		21.702	0	1	394010	+		52089	27279	36335	36388	57374	57374					0.04793678070245733
MPGLGWVLR	9	Unmodified	_MPGLGWVLR_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.790283203125	2	514.78913	1027.56371	-0.37384	-0.00019245	2.2299	0.0011479	1.856	0.00095547	514.7904788724784	53.353	0.82323	53.353	53.011	53.835	0					64	22	5	0	0	0	0.4855	1	5759	5759		60.294	1.512	1	3176900			52090	1805	36336	36389	57375	57375					0.05102714533268227
MPGLGWVLR	9	Unmodified	_MPGLGWVLR_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7900390625	2	514.78913	1027.56371	-0.87614	-0.00045103	2.7964	0.0014395	1.9202	0.00098851	514.7907366937002	53.411	0.76133	53.264	53.023	53.784	-0.14723					60	20	5	0	0	0	0.33184	2	5747	5747;5759		71.378	27.001	1	3552400			52091	1805	36336	36389	57376;57377	57376					0.05102714533268227
MPGLGWVLR	9	Unmodified	_MPGLGWVLR_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	514.78913	1027.56371	-0.87648	-0.0004512	3.3414	0.0017201	2.465	0.0012689	514.7907596048357	53.222	0.95	53.318	53.054	54.004	0.095669	0.0023774	0.00058897	NaN	71.378	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3876400			52092	1805	36336	36389							0.05102714533268227
MPGLGWVLR	9	Unmodified	_MPGLGWVLR_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.78913	1027.56371	-0.32113	-0.00016532	2.1042	0.0010832	1.7831	0.00091791	514.7905555313872	53.43	0.37135	53.303	53.066	53.437	-0.12705	-0.013114	-0.00068485	NaN	71.378	26	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905530			52093	1805	36336	36389							0.05102714533268227
MPGLGWVLR	9	Unmodified	_MPGLGWVLR_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.78913	1027.56371	-0.081734	-4.2076E-05	2.5653	0.0013206	2.4836	0.0012785	514.7904092503506	53.587	0.36491	53.332	53.117	53.482	-0.25418	0.016655	-0.00021008	NaN	71.378	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	879740			52094	1805	36336	36389							0.05102714533268227
MPGLGWVLR	9	Unmodified	_MPGLGWVLR_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.78913	1027.56371	-0.17338	-8.9254E-05	1.0292	0.00052981	0.85581	0.00044056	514.7901654380764	53.521	0.55476	53.324	52.934	53.489	-0.19739	0.0082599	-0.0017917	NaN	71.378	37	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669400			52095	1805	36336	36389							0.05102714533268227
MPGRPGPDGR	10	Unmodified	_MPGRPGPDGR_					0	0	0			REV__ENST00000441403.1_1_21:34914462-34914645:-|nuORF	REV__ENST00000441403.1_1_21:34914462-34914645:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8189697265625	2	520.258725	1038.5029	0.17802	9.2617E-05	-1.4575	-0.00075825	-1.2794	-0.00066564	520.2580959457802	71.166	0.31289	71.166	71.026	71.339	0					11	7	2	0	0	0	0.03519	1	8636	8636		37.812	0	1	144540	+		52096	32544	36337	36390	57378	57378					-0.014814225169402562
MPIELLTKG	9	Unmodified	_MPIELLTKG_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3153381347656	2	501.288628	1000.5627	-0.67665	-0.0003392	3.8028	0.0019063	3.1262	0.0015671	501.29259519833937	60.261	0.45515	60.011	59.76	60.215	-0.25018					23	11	3	0	0	0	0.024447	1	6709	6709		40.778	0	1	242010			52097	8901	36338	36391	57379	57379					0.06244455373735036
MPIKHAIQW	9	Unmodified	_MPIKHAIQW_					0	0	0		nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7845458984375	2	562.307687	1122.60082	-0.1217	-6.8432E-05	0.64294	0.00036153	0.52124	0.0002931	562.3090112934983	46.568	0.44131	46.307	46.162	46.603	-0.26118					14	11	2	0	0	0	0.024457	1	4488	4488		29.15	3.5755	1	166250			52098	2425	36339	36392	57380	57380					0.044423860790402614
MPIKHAIQW	9	Unmodified	_MPIKHAIQW_					0	0	0		nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.307687	1122.60082	-0.011376	-6.3968E-06	-0.89048	-0.00050073	-0.90186	-0.00050712	562.307899125577	46.371	0.21643	46.275	46.115	46.331	-0.096653	-0.01627	-0.0006185	NaN	21.96	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109200			52099	2425	36339	36392							0.044423860790402614
MPILTSFMV	9	Unmodified	_MPILTSFMV_					0	0	0		ENST00000278193.6_1_11:27519997-27520060:-|nuORF	ENST00000278193.6_1_11:27519997-27520060:-|nuORF	ENST00000278193.6_1_11:27519997-27520060:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8186645507812	2	519.771757	1037.52896	0.39439	0.00020499	-4.4143	-0.0022944	-4.0199	-0.0020895	520.2724905278736	71.657	0.57057	71.368	71.153	71.724	-0.28857					17	14	2	0	0	0	0.023355	1	8647	8647		88.643	25.337	1	112830			52100	11699	36340	36393	57381	57381					0.01169710610315633
MPINGLREL	9	Oxidation (M)	_M(Oxidation (M))PINGLREL_		M(1)PINGLREL		M(85)PINGLREL	0	0	1			REV__ENST00000397536.6_2_15:40625053-40625155:-|nuORF	REV__ENST00000397536.6_2_15:40625053-40625155:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7857666015625	2	529.786784	1057.55902	-0.16954	-8.982E-05	-3.3792	-0.0017902	-3.5487	-0.0018801	529.784879757125	72.41	0.80518	72.133	71.908	72.713	-0.2769					47	18	4	0	0	0	0.23085	1	8501	8501		84.916	13.62	1	1655100	+		52101	31775	36341	36394	57382	57382		885			0.03253785599872572
MPISILYNK	9	Unmodified	_MPISILYNK_					0	0	0		ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	ENSG00000168263|ENST00000382082|KCNV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.7998657226562	2	539.801903	1077.58925	-0.44014	-0.00023759	-2.247	-0.0012129	-2.6871	-0.0014505	539.8003191670888	68.327	0.88258	68.097	67.715	68.598	-0.23048					56	21	4	0	0	0	0.15889	1	7892	7892		97.473	4.2772	1	3290900			52102	7802	36342	36395	57383	57383					0.05356144265033436
MPIVPDLSV	9	Unmodified	_MPIVPDLSV_					0	0	0		ENST00000398334.5_2_X:14883659-14887094:-|nuORF	ENST00000398334.5_2_X:14883659-14887094:-|nuORF	ENST00000398334.5_2_X:14883659-14887094:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2668762207031	2	485.767529	969.520504	-0.15667	-7.6105E-05	-2.0628	-0.0010021	-2.2195	-0.0010782	485.76576155758977	101.87	2.4627	101.86	100.72	103.18	-0.0054474					70	57	2	0	0	0	0.59099	2	12961	12961;12971		53.351	2.016	1	378150			52103	13622	36343	36396	57384;57385	57384					0.034524799653581795
MPKALSTRIV	10	Unmodified	_MPKALSTRIV_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENST00000487395.1_1_6:102376237-102441071:+|nuORF;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.33251953125	2	558.333901	1114.65325	0.46282	0.00025841	-3.6505	-0.0020382	-3.1877	-0.0017798	558.3317503544573	59.292	0.9045	59.11	58.831	59.736	-0.18134					61	22	4	0	0	0	0.71272	1	6539	6539		66.429	0.96389	1	5394800			52104	7277	36344	36397	57386	57386					0.10050924421989293
MPKEMVPLGE	10	Oxidation (M)	_MPKEM(Oxidation (M))VPLGE_		M(0.06)PKEM(0.94)VPLGE		M(-12)PKEM(12)VPLGE	0	0	1		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.7821655273438	2	573.78031	1145.54607	-0.19469	-0.00011171	3.8875	0.0022306	3.6928	0.0021189	573.782528465205	64.351	3.893	64.123	62.569	66.462	-0.22773					221	97	4	0	0	0	0.94316	1	7336	7336		51.193	6.8155	2	5968600			52105	11084	36345	36398	57387	57387		462			-0.020884135745291132
MPKGRVLDK	9	Oxidation (M)	_M(Oxidation (M))PKGRVLDK_		M(1)PKGRVLDK		M(100)PKGRVLDK	0	0	1		nc|ENSG00000147257|P51654-3|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3038940429688	2	530.302601	1058.59065	-0.17543	-9.3032E-05	0.023355	1.2385E-05	-0.15208	-8.0647E-05	530.3024257282991	52.355	0.66711	52.171	51.889	52.557	-0.18404					36	16	3	0	0	0	0.14024	1	5431	5431		101.6	11.231	1	1176800			52106	18362	36346	36399	57388	57388		573			0.06369778353791844
MPKGRVLDK	9	Oxidation (M)	_M(Oxidation (M))PKGRVLDK_					0	0	1		nc|ENSG00000147257|P51654-3|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.302601	1058.59065	-0.80266	-0.00042565	-1.3386	-0.00070988	-2.1413	-0.0011355	530.3011120821357	52.293	0.79771	52.174	51.682	52.48	-0.11876	-0.034274	-0.0020538	NaN	101.6	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1101200			52107	18362	36346	36399				573			0.06369778353791844
MPKGRVLDK	9	Oxidation (M)	_M(Oxidation (M))PKGRVLDK_					0	0	1		nc|ENSG00000147257|P51654-3|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.302601	1058.59065	-1.0819	-0.00057373	0.86616	0.00045933	-0.21573	-0.0001144	530.3029247566144	52.55	0.58325	52.281	52.089	52.673	-0.26903	0.072155	0.00028458	NaN	101.6	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1301000			52108	18362	36346	36399				573			0.06369778353791844
MPKHLELAD	9	Unmodified	_MPKHLELAD_					0	0	0		ENST00000439139.1_1_1:158165752-158165914:-|nuORF	ENST00000439139.1_1_1:158165752-158165914:-|nuORF	ENST00000439139.1_1_1:158165752-158165914:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2703857421875	2	527.273509	1052.53247	0.63967	0.00033728	-0.82222	-0.00043354	-0.18255	-9.6253E-05	527.2712476933875	82.241	1.4543	82.131	81.441	82.895	-0.11006					56	34	3	0	0	0	0.53979	1	10246	10246		56.721	7.185	1	6518300			52109	14326	36347	36400	57389	57389					0.008300967085460798
MPKNQRRGF	9	Unmodified	_MPKNQRRGF_					0	0	0			REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.3131713867188	2	567.303467	1132.59238	-0.11639	-6.6029E-05	-0.1521	-8.6289E-05	-0.26849	-0.00015232	567.3016538736673	34.24	0.5416	34.033	33.824	34.366	-0.20696					28	13	3	0	0	0	0.024487	1	2550	2550		31.955	0	1	339890	+		52110	21106	36348	36401	57390	57390					0.031388321624490345
MPKQKRLY	8	Unmodified	_MPKQKRLY_					0	0	0			REV__ENST00000571669.6_1_17:2323092-2323221:-|nuORF	REV__ENST00000571669.6_1_17:2323092-2323221:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8026123046875	2	532.307687	1062.60082	-0.7776	-0.00041392	3.9347	0.0020945	3.1571	0.0016805	532.3097012274701	78.824	1.6241	78.824	78.162	79.786	0					70	38	3	0	0	0	0.027866	1	9840	9840		19.36	0	1	204300	+		52111	35409	36349	36402	57391	57391					0.07202386079052303
MPKVHIEF	8	Unmodified	_MPKVHIEF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7676696777344	2	500.767863	999.521173	-0.69505	-0.00034806	0.07191	3.601E-05	-0.62314	-0.00031205	500.7678436371249	54.209	2.0321	54.073	53.134	55.166	-0.13616					146	58	4	0	0	0	0.27053	6	5772	5725;5737;5748;5759;5772;5791		124.59	50.62	1	13046000			52112	3480	36350	36403	57392;57393;57394;57395;57396;57397	57396					0.02139319405068818
MPKVHIEF	8	Unmodified	_MPKVHIEF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.768310546875	2	500.767863	999.521173	-0.10047	-5.0311E-05	-0.39918	-0.0001999	-0.49965	-0.00025021	500.7675631840214	54.332	1.7832	54.087	53.199	54.983	-0.2453					120	52	3	0	0	0	0.27053	6	5737	5737;5746;5758;5770;5783;5796		124.59	66.783	1	13314000			52113	3480	36350	36403	57398;57399;57400;57401;57402;57403	57398					0.02139319405068818
MPKVHIEF	8	Unmodified	_MPKVHIEF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7674560546875	2	500.767863	999.521173	-0.1001	-5.0126E-05	-0.38293	-0.00019176	-0.48302	-0.00024188	500.7675441281643	54.299	1.9626	54.102	53.126	55.088	-0.19739					134	55	4	0	0	0	0.12879	5	5736	5724;5736;5747;5758;5770		152.63	70.328	1	10619000			52114	3480	36350	36403	57404;57405;57406;57407;57408	57405					0.02139319405068818
MPKVYIIF	8	Unmodified	_MPKVYIIF_					0	0	0		GRM8|p.I842F|1|0.15|ENSG00000179603|chr7:126446279-126446279|T/A|missense_variant	GRM8|p.I842F|1|0.15|ENSG00000179603|chr7:126446279-126446279|T/A|missense_variant	GRM8|p.I842F|1|0.15|ENSG00000179603|chr7:126446279-126446279|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.76531982421875	2	505.790807	1009.56706	-1.0686	-0.00054051	4.3912	0.002221	3.3226	0.0016805	506.29508603584407	80.654	0.54827	80.503	80.091	80.639	-0.15168					18	12	2	0	0	0	0.027866	1	9945	9945		54.765	14.192	1	107680			52115	17699	36351	36404	57409	57409					0.06265964587294093
MPLADLLERY	10	Unmodified	_MPLADLLERY_					0	0	0			REV__ENSG00000124194|ENST00000342560|GDAP1L1	REV__ENSG00000124194|ENST00000342560|GDAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.7371826171875	3	407.549641	1219.62709	-0.49782	-0.00020289	-0.021112	-8.6043E-06	-0.51894	-0.00021149	407.54973205754345	37.607	0.31452	37.387	37.192	37.506	-0.2195					9	7	2	0	0	0	0.03519	1	3041	3041		28.081	10.947	1	41512	+		52116	22744	36352	36405	57410	57410					0.026066104598839956
MPLADLLH	8	Unmodified	_MPLADLLH_					0	0	0			REV__ENST00000552459.2_1_12:51634868-51636183:+|nuORF	REV__ENST00000552459.2_1_12:51634868-51636183:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.279296875	2	455.246763	908.478974	-0.1122	-5.1078E-05	4.2329	0.001927	4.1207	0.0018759	455.2483645869136	24.752	0.38335	24.537	24.336	24.72	-0.2151					11	8	2	0	0	0	0.027866	1	1094	1094		54.765	0	1	64286	+		52117	34952	36353	36406	57411	57411					0.021073439966812657
MPLAEAGALAQ	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MPLAEAGALAQ_					1	0	0		ENST00000442114.6_2_6:43968341-43968485:+|nuORF;nc|ENSG00000181577|Q8N319-4|LINC03040;nc|ENSG00000181577|Q8N319|LINC03040	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	ENST00000442114.6_2_6:43968341-43968485:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.2855224609375	2	557.284074	1112.5536	-1.2239	-0.00068209	4.2364	0.0023609	3.0125	0.0016788	557.2863363549601	24.157	0.79718	24.11	23.826	24.623	-0.047148					56	17	5	0	0	0	0.69247	1	1011	1011		64.207	7.4862	1	1389800			52118	14376	36354	36407	57412	57412					0.0018206201739303651
MPLDLYAY	8	Unmodified	_MPLDLYAY_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3052978515625	2	493.238604	984.462655	0.51589	0.00025446	-4.4187	-0.0021795	-3.9028	-0.001925	493.2364944748062	69.6	0.18245	69.307	69.166	69.348	-0.29291					7	4	2	0	0	0	0.027866	1	8333	8333		20.482	0	1	61812			52119	2924	36355	36408	57413	57413					-0.03019781960074397
MPLKSFYR	8	Unmodified	_MPLKSFYR_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2821044921875	2	521.281137	1040.54772	0.12901	6.7253E-05	2.9381	0.0015316	3.0671	0.0015988	521.2826237139075	22.154	1.1721	21.965	21.434	22.606	-0.18894					61	24	5	0	0	0	0.81662	1	773	773		57.811	11.859	1	990180			52120	5040	36356	36409	57414	57414					0.02907008296369895
MPLKSFYR	8	Unmodified	_MPLKSFYR_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2819213867188	2	521.281137	1040.54772	-0.32385	-0.00016881	3.3916	0.001768	3.0677	0.0015992	521.2828741398849	22.352	1.1196	22.167	21.618	22.738	-0.18539					56	23	4	0	0	0	0.96719	1	765	765		42.474	7.2737	1	986830			52121	5040	36356	36409	57415	57415					0.02907008296369895
MPLLAGWQT	9	Unmodified	_MPLLAGWQT_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.766845703125	2	508.76532	1015.51609	0.28445	0.00014472	2.0036	0.0010193	2.288	0.0011641	508.76629016361085	65.662	0.89764	65.662	65.326	66.224	0					53	23	3	0	0	0	0.20967	1	7799	7799		87.754	8.0417	1	5155800			52122	3375	36357	36410	57416	57416					0.008950155424486184
MPLLAGWQT	9	Unmodified	_MPLLAGWQT_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7669372558594	2	508.76532	1015.51609	-0.11272	-5.7349E-05	2.366	0.0012038	2.2533	0.0011464	508.76647498317294	65.963	0.85902	65.69	65.362	66.221	-0.27283					52	22	3	0	0	0	0.16468	1	7807	7807		96.19	13.885	1	4474100			52123	3375	36357	36410	57417	57417					0.008950155424486184
MPLLAGWQT	9	Unmodified	_MPLLAGWQT_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7665710449219	2	508.76532	1015.51609	-0.1177	-5.9884E-05	2.4069	0.0012245	2.2891	0.0011646	508.76649675363586	65.677	0.77671	65.715	65.389	66.166	0.037384					48	20	3	0	0	0	0.16468	1	7717	7717		96.19	8.494	1	4997100			52124	3375	36357	36410	57418	57418					0.008950155424486184
MPLLDQRQG	9	Unmodified	_MPLLDQRQG_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.311279296875	2	529.276583	1056.53861	-1.3025	-0.00068936	-4.0535	-0.0021454	-5.356	-0.0028348	529.7748362258928	60.802	0.27057	60.625	60.443	60.714	-0.1761					9	6	2	0	0	0	0.024466	1	6781	6781		31.53	10.583	1	66553	+		52125	36769	36358	36411	57419	57419					0.012606149400653521
MPLLDQRQG	9	Unmodified	_MPLLDQRQG_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.276583	1056.53861	-0.50559	-0.0002676	-10.538	-0.0055774	-11.043	-0.005845	529.2701384089671	60.486	0.16251	60.233	60.132	60.294	-0.25373	-0.19637	-0.0053227	NaN	22.58	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36723	+		52126	36769	36358	36411							0.012606149400653521
MPLLMLDAR	9	Unmodified	_MPLLMLDAR_					0	0	0			REV__ENST00000374016.5_1_9:118054157-118068258:+|nuORF	REV__ENST00000374016.5_1_9:118054157-118068258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2882080078125	2	530.288105	1058.56166	-0.31159	-0.00016523	0.9719	0.00051539	0.66031	0.00035016	530.2884227227145	45.611	0.61437	45.655	45.344	45.958	0.043877					41	17	3	0	0	0	0.4752	1	4374	4374		60.972	15	1	7909800	+		52127	31283	36359	36412	57420	57420					0.03471917733168084
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.80810546875	2	564.807716	1127.60088	-0.22385	-0.00012643	0.30624	0.00017297	0.082387	4.6533E-05	564.8076842695062	58.715	0.71255	58.527	58.266	58.979	-0.18795					38	17	3	0	0	0	0.094442	1	6463	6463		112.41	10.81	1	2405800			52128	982	36360	36413	57421	57421					0.042183412884014615
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8077392578125	2	564.807716	1127.60088	0.17908	0.00010115	-0.29613	-0.00016726	-0.11705	-6.6112E-05	564.807564852682	58.624	0.64416	58.443	58.187	58.831	-0.18133					38	15	4	0	0	0	0.027092	2	6464	6452;6464		143.89	39.14	1	2284700			52129	982	36360	36413	57422;57423	57423					0.042183412884014615
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.8084716796875	2	564.807716	1127.60088	0.53961	0.00030477	-0.45327	-0.00025601	0.086333	4.8762E-05	564.8072928919825	58.803	0.8787	58.561	58.258	59.137	-0.24165					51	21	4	0	0	0	0.020687	1	6459	6459		148.99	35.575	1	2472200			52130	982	36360	36413	57424	57424					0.042183412884014615
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		nc|ENSG00000024422|Q9NZN4-2|EHD2;ENSG00000024422|ENST00000263277|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF;EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	nc|ENSG00000024422|Q9NZN4-2|EHD2	nc|ENSG00000024422|Q9NZN4-2|EHD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.807716	1127.60088	-0.32794	-0.00018523	-4.4448	-0.0025104	-4.7727	-0.0026957	564.8076179354845	58.393	0.91251	58.484	58.084	58.997	0.091217	-0.0073314	-0.0044468	NaN	148.99	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449870			52131	982	36360	36413							0.042183412884014615
MPLLYLKN	8	Unmodified	_MPLLYLKN_					0	0	0		ENST00000523547.1_1_8:117874080-117874137:-|nuORF	ENST00000523547.1_1_8:117874080-117874137:-|nuORF	ENST00000523547.1_1_8:117874080-117874137:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.26763916015625	2	496.285889	990.557224	0.26094	0.0001295	3.0687	0.001523	3.3297	0.0016525	496.28729282411854	39.222	0.52448	39.222	38.97	39.495	0					40	14	4	0	0	0	0.027866	1	3395	3395		13.775	2.9098	1	438810			52132	16045	36361	36414	57425	57425					0.06156776581917711
MPLLYLKN	8	Unmodified	_MPLLYLKN_					0	0	0		ENST00000523547.1_1_8:117874080-117874137:-|nuORF	ENST00000523547.1_1_8:117874080-117874137:-|nuORF	ENST00000523547.1_1_8:117874080-117874137:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.285889	990.557224	-0.75813	-0.00037625	4.0738	0.0020218	3.3157	0.0016455	496.2877746375277	39.254	0.49701	39.155	38.914	39.411	-0.098755	-0.11795	0.00041463	NaN	26.796	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496780			52133	16045	36361	36414							0.06156776581917711
MPLLYLKN	8	Unmodified	_MPLLYLKN_					0	0	0		ENST00000523547.1_1_8:117874080-117874137:-|nuORF	ENST00000523547.1_1_8:117874080-117874137:-|nuORF	ENST00000523547.1_1_8:117874080-117874137:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.285889	990.557224	-0.7346	-0.00036457	4.0142	0.0019922	3.2796	0.0016276	496.287782121672	39.418	0.6677	39.442	39.206	39.874	0.023727	0.16929	0.00035552	NaN	26.796	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427830			52134	16045	36361	36414							0.06156776581917711
MPLMLLEVVQ	10	Oxidation (M)	_M(Oxidation (M))PLMLLEVVQ_		M(1)PLMLLEVVQ		M(46)PLM(-46)LLEVVQ	0	0	1			REV__ENST00000407450.1_1_6:118774123-118774444:-|nuORF	REV__ENST00000407450.1_1_6:118774123-118774444:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.3031005859375	2	594.821978	1187.6294	-0.92019	-0.00054735	0.27261	0.00016215	-0.64758	-0.00038519	595.3227194945802	40.965	0.3498	40.83	40.597	40.947	-0.13554					16	8	2	0	0	0	0.03519	1	3577	3577		62.107	7.3311	2	134730	+		52135	31935	36362	36415	57426	57426		888			0.043093228733141586
MPLMSLLF	8	Oxidation (M)	_MPLM(Oxidation (M))SLLF_		M(0.017)PLM(0.983)SLLF		M(-18)PLM(18)SLLF	0	0	1			REV__AFG3L2|p.T260M|1|0.21|ENSG00000141385|chr18:12358917-12358917|G/A|missense_variant	REV__AFG3L2|p.T260M|1|0.21|ENSG00000141385|chr18:12358917-12358917|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2535400390625	2	484.2532	966.491847	0.17734	8.5876E-05	0.15159	7.3406E-05	0.32892	0.00015928	484.25323939594875	52.454	1.5806	52.306	51.985	53.566	-0.14723					85	41	4	0	0	0	0.85409	1	5624	5624		54.765	7.9982	2	9733500	+		52136	19083	36363	36416	57427	57427		599			0.007260390645797088
MPLQCLPGVA	10	Unmodified	_MPLQCLPGVA_					0	0	0		ENST00000401533.6_1_2:26409082-26410272:+|nuORF	ENST00000401533.6_1_2:26409082-26410272:+|nuORF	ENST00000401533.6_1_2:26409082-26410272:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.295654296875	2	514.767006	1027.51946	-0.24503	-0.00012614	2.4495	0.0012609	2.2045	0.0011348	514.7675434988267	73.432	0.55596	73.241	73.047	73.602	-0.19027					20	13	2	0	0	0	0.03519	1	8604	8604		45.952	17.87	1	309220			52137	13670	36364	36417	57428	57428					0.006799423248139647
MPLSKHLMY	9	Unmodified	_MPLSKHLMY_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|19|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|19|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|19|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3108520507812	2	560.288105	1118.56166	-1.0489	-0.00058769	-4.1856	-0.0023452	-5.2345	-0.0029328	560.2823119960069	51.26	0.89557	51.347	50.682	51.577	0.087006					48	24	4	0	0	0	0.024457	1	5368	5368		29.15	0	1	873860			52138	17811	36365	36418	57429	57429					0.007119177331787796
MPMPMGYNP	9	Unmodified	_MPMPMGYNP_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.8109130859375	2	519.216291	1036.41803	-1.2207	-0.00063381	3.6761	0.0019087	2.4554	0.0012749	519.2180188560242	60.517	0.66468	60.517	60.256	60.921	0					31	17	3	0	0	0	0.024466	1	6975	6975		12.207	0	1	429400			52139	8017	36366	36419	57430	57430					-0.0987225236942777
MPMPVMGDPG	10	Unmodified	_MPMPVMGDPG_					0	0	0			REV__ENST00000587765.1_1_19:38282860-38283352:+|nuORF	REV__ENST00000587765.1_1_19:38282860-38283352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7739868164062	2	516.221574	1030.42859	0.38365	0.00019805	-0.71819	-0.00037075	-0.33454	-0.0001727	516.2211625772352	68.802	0.48349	68.559	68.348	68.832	-0.24278					16	11	2	0	0	0	0.03519	1	7992	7992		47.916	0	1	163600	+		52140	35633	36367	36420	57431	57431					-0.08540269714990245
MPMYRNYHATT	11	Unmodified	_MPMYRNYHATT_					0	0	0		ENST00000440204.5_1_3:171443806-171453328:-|nuORF;ENST00000475273.6_1_3:171439220-171455712:-|nuORF;nc|ENSG00000075651|Q13393-3|PLD1;PLD1|p.N772Tfs*14|1|0.18|ENSG00000075651|chr3:171662085-171662085|T/-|frameshift_variant;nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1	ENST00000440204.5_1_3:171443806-171453328:-|nuORF	ENST00000440204.5_1_3:171443806-171453328:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.7589416503906	3	462.209402	1383.60638	0.18516	8.5585E-05	4.3567	0.0020137	4.5418	0.0020993	462.2105818255112	36.937	0.42385	36.874	36.628	37.052	-0.063389					15	10	2	0	0	0	0.02484	1	2924	2924		12.433	2.3289	1	135740			52141	1566	36368	36421	57432	57432					-0.07008303191469167
MPNDEIGR	8	Unmodified	_MPNDEIGR_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2637939453125	2	466.218734	930.422915	-0.41491	-0.00019344	-1.9265	-0.00089817	-2.3414	-0.0010916	466.2171238385062	31.122	1.0684	30.969	30.426	31.495	-0.15231					42	26	3	0	0	0	0.027866	1	1944	1944		35.618	2.8059	1	115460	+		52142	28600	36369	36422	57433	57433					-0.045079089107844084
MPNDEIGR	8	Unmodified	_MPNDEIGR_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.218734	930.422915	-1.1069	-0.00051604	-2.5164	-0.0011732	-3.6233	-0.0016892	466.21743989890535	30.941	0.37289	30.941	30.758	31.131	0	0.026846	0.00040398	NaN	35.618	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123290	+		52143	28600	36369	36422							-0.045079089107844084
MPNDEIGR	8	Unmodified	_MPNDEIGR_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.218734	930.422915	-0.24604	-0.00011471	-3.6483	-0.0017009	-3.8943	-0.0018156	466.21691262846565	30.846	0.50223	30.858	30.668	31.17	0.011799	-0.056345	-0.00065139	NaN	35.618	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114590	+		52144	28600	36369	36422							-0.045079089107844084
MPNDEIGR	8	Unmodified	_MPNDEIGR_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.218734	930.422915	-0.2274	-0.00010602	-3.4033	-0.0015867	-3.6307	-0.0016927	466.2170746876176	31.121	0.94379	30.88	30.541	31.485	-0.24109	-0.034515	-0.00042302	NaN	35.618	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97986	+		52145	28600	36369	36422							-0.045079089107844084
MPNDEIGR	8	Unmodified	_MPNDEIGR_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.218734	930.422915	-0.35775	-0.00016679	-2.9718	-0.0013855	-3.3295	-0.0015523	466.21726461079567	31.108	0.8704	30.923	30.49	31.36	-0.18503	0.0089822	-2.0622E-05	NaN	35.618	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143450	+		52146	28600	36369	36422							-0.045079089107844084
MPPARPSPIGQ	11	Unmodified	_MPPARPSPIGQ_					0	0	0			REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.84326171875	2	575.805508	1149.59646	-0.96531	-0.00055583	-3.078	-0.0017723	-4.0433	-0.0023282	576.3038320201972	90.568	0.25523	90.443	90.332	90.587	-0.12512					7	5	2	0	0	0	0.024756	1	11098	11098		22.58	0	1	62986	+		52147	24571	36370	36423	57434	57434					0.02764876865489896
MPPKIKLVN	9	Unmodified	_MPPKIKLVN_					0	0	0			REV__ENSG00000164089|ENST00000296486|ETNPPL	REV__ENSG00000164089|ENST00000296486|ETNPPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8187866210938	2	520.320263	1038.62597	-0.12184	-6.3394E-05	-0.42936	-0.00022341	-0.5512	-0.0002868	520.3201234885372	71.368	2.3526	71.378	70.55	72.902	0.010735					119	59	5	0	0	0	0.023355	1	8549	8549		65.803	7.9919	1	13350000	+		52148	25692	36371	36424	57435	57435					0.10820440881616378
MPPNVLSSL	9	Oxidation (M)	_M(Oxidation (M))PPNVLSSL_		M(1)PPNVLSSL		M(93)PPNVLSSL	0	0	1			REV__nc|ENSG859|P60507|ERVFC1	REV__nc|ENSG859|P60507|ERVFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2548522949219	2	487.254785	972.495018	-0.5555	-0.00027067	0.90716	0.00044202	0.35166	0.00017135	487.25509362581715	64.616	0.88698	64.616	64.168	65.055	0					61	23	4	0	0	0	0.17822	1	7622	7622		93.195	21.9	1	2219600	+		52149	37255	36372	36425	57436	57436		981			0.0076700544294681094
MPQAPGHRGK	10	Unmodified	_MPQAPGHRGK_					0	0	0		nc|ENSG00000118096|Q9NQC8-2|IFT46	nc|ENSG00000118096|Q9NQC8-2|IFT46	nc|ENSG00000118096|Q9NQC8-2|IFT46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2640991210938	2	539.782367	1077.55018	-0.21095	-0.00011387	3.7796	0.0020402	3.5687	0.0019263	539.7843132273327	69.648	0.53644	69.398	69.196	69.732	-0.25063					17	12	2	0	0	0	0.03519	1	8070	8070		26.693	8.3685	1	70882			52150	18204	36373	36426	57437	57437					0.014508567540588047
MPQLEPTCEI	10	Oxidation (M)	_M(Oxidation (M))PQLEPTCEI_		M(1)PQLEPTCEI		M(57)PQLEPTCEI	0	0	1		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MSMS	OPSCC_40_ClassI_Rep-3	6	588.76806640625	2	588.7674	1175.52025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.29	1	101.12	100.62	101.62	-0.17178								0	0	0	0.77371	1	12560	12560		56.721	7.2795	1				52151	6541	36374	36427	57438	57438		272			-0.06049307816829241
MPQLKLIW	8	Unmodified	_MPQLKLIW_					0	0	0			REV__ENST00000287097.5_1_6:74519745-74519847:+|nuORF	REV__ENST00000287097.5_1_6:74519745-74519847:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7579956054688	2	514.801706	1027.58886	0.29936	0.00015411	3.4798	0.0017914	3.7791	0.0019455	515.3058420344514	74.352	0.22029	74.089	74.01	74.231	-0.26326					6	4	2	0	0	0	0.027866	1	8762	8762		44.531	12.576	1	70974	+		52152	29922	36375	36428	57439	57439					0.07616769335868412
MPQTYQLFE	9	Unmodified	_MPQTYQLFE_					0	0	0			REV__ENSG00000147896|ENST00000276943|IFNK	REV__ENSG00000147896|ENST00000276943|IFNK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.7720947265625	2	578.7708	1155.52705	-0.4622	-0.00026751	3.5658	0.0020638	3.1036	0.0017963	578.7726246621869	86.207	0.9433	86.207	85.956	86.899	0					46	21	4	0	0	0	0.87816	1	10836	10836		33.922	1.1092	1	609510	+		52153	24588	36376	36429	57440	57440					-0.04449626873952184
MPRGSGSGF	9	Unmodified	_MPRGSGSGF_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;nc|ENSG00000137776|Q9NWH9-3|SLTM	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2082214355469	2	448.20817	894.401786	-0.28583	-0.00012811	0.5591	0.00025059	0.27326	0.00012248	448.20827608333417	32.234	1.0696	32.234	31.91	32.979	0					55	27	3	0	0	0	0.26966	1	2217	2217		79.713	11.228	1	1498300			52154	5153	36377	36430	57441	57441					-0.049638742196293606
MPRGSGSGF	9	Unmodified	_MPRGSGSGF_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;nc|ENSG00000137776|Q9NWH9-3|SLTM	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.20819091796875	2	448.20817	894.401786	-0.21775	-9.7598E-05	0.45656	0.00020464	0.23881	0.00010704	448.208250696427	32.076	1.1106	32.088	31.782	32.893	0.011795					55	28	3	0	0	0	0.26966	2	2189	2177;2189		79.713	21.901	1	1799300			52155	5153	36377	36430	57442;57443	57443					-0.049638742196293606
MPRGSGSGF	9	Unmodified	_MPRGSGSGF_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;nc|ENSG00000137776|Q9NWH9-3|SLTM	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.20831298828125	2	448.20817	894.401786	-0.33226	-0.00014892	0.61482	0.00027557	0.28255	0.00012664	448.20832413976376	31.865	0.93945	31.934	31.606	32.546	0.068962					51	23	3	0	0	0	0.19099	2	2108	2108;2119		90.37	27.064	1	1367900			52156	5153	36377	36430	57444;57445	57444					-0.049638742196293606
MPRLPGPQVS	10	Unmodified	_MPRLPGPQVS_					0	0	0			REV__ENSG00000162458|ENST00000375766|FBLIM1	REV__ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2960205078125	2	541.294776	1080.575	0.90611	0.00049047	-1.0571	-0.00057218	-0.15096	-8.1714E-05	541.2942429467785	98.401	1.2925	98.276	97.911	99.204	-0.12414					64	31	3	0	0	0	0.98527	1	12205	12205		47.96	0.30219	1	275750	+		52157	25444	36378	36431	57446	57446					0.03793491836790963
MPRRKLPRQG	10	Unmodified	_MPRRKLPRQG_					0	0	0		ENST00000484597.1_1_3:169427217-169427478:+|nuORF	ENST00000484597.1_1_3:169427217-169427478:+|nuORF	ENST00000484597.1_1_3:169427217-169427478:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8692016601562	2	619.866766	1237.71898	-0.13269	-8.2249E-05	4.4432	0.0027542	4.3105	0.002672	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0781	1	11791	11791		35.618	1.6967	1	4730400			52158	15305	36379	36432	57447	57447					0.10962758387563554
MPRSKPSIHG	10	Unmodified	_MPRSKPSIHG_					0	0	0			REV__ENSG00000182575|ENST00000328741|NXPH3	REV__ENSG00000182575|ENST00000328741|NXPH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.35302734375	2	555.29785	1108.58115	-0.13862	-7.6976E-05	1.1896	0.00066057	1.051	0.0005836	555.2984580127418	99.511	0.65442	99.342	99.074	99.728	-0.16862					25	16	2	0	0	0	0.03519	1	12375	12375		26.693	0	1	31349	+		52159	27491	36380	36433	57448	57448					0.031200100683008714
MPSFKMPKV	9	Unmodified	_MPSFKMPKV_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MSMS	OPSCC_39_ClassI_Rep-1	1	532.784423828125	2	532.785198	1063.55584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.907	1	45.907	45.407	46.407	0								0	0	0	0.083023	1	4501	4501		96.19	0.37527	1				52160	9453	36381	36434	57449	57449					0.026608192215007875
MPSLLGAPP	9	Unmodified	_MPSLLGAPP_					0	0	0		ENSG00000146373|ENST00000521654|RNF217	ENSG00000146373|ENST00000521654|RNF217	ENSG00000146373|ENST00000521654|RNF217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2664489746094	2	441.741314	881.468075	-0.75394	-0.00033305	-2.3364	-0.0010321	-3.0903	-0.0013651	441.73992822892416	59.922	0.45113	60	59.791	60.242	0.078888					16	11	2	0	0	0	0.024183	1	6815	6815		50.025	0	1	117690			52161	5874	36382	36435	57450	57450					0.022599416224011293
MPSLLRVLS	9	Unmodified	_MPSLLRVLS_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|257|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|257|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|257|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3026428222656	2	508.30207	1014.58959	-0.034944	-1.7762E-05	-0.16899	-8.5896E-05	-0.20393	-0.00010366	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.31037	2	6165	6149;6165		74.255	2.3776	1	8817200			52162	17899	36383	36436	57451;57452	57452					0.08287563984913504
MPSLLRVLS	9	Unmodified	_MPSLLRVLS_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|257|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|257|3|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|257|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3021545410156	2	508.30207	1014.58959	-0.35052	-0.00017817	0.19073	9.6946E-05	-0.15979	-8.1223E-05	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.19099	1	6141	6141		90.37	13.052	1	8370900			52163	17899	36383	36436	57453	57453					0.08287563984913504
MPSMRILVT	9	Unmodified	_MPSMRILVT_					0	0	0		CACNA1H|p.V213M|1|0.37|ENSG00000196557|chr16:1196017-1196017|G/A|missense_variant	CACNA1H|p.V213M|1|0.37|ENSG00000196557|chr16:1196017-1196017|G/A|missense_variant	CACNA1H|p.V213M|1|0.37|ENSG00000196557|chr16:1196017-1196017|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2881469726562	2	524.288105	1046.56166	-0.16834	-8.826E-05	-1.1332	-0.00059414	-1.3016	-0.0006824	524.2874855521978	27.778	0.64907	27.622	27.307	27.956	-0.15664					38	15	3	0	0	0	0.42604	1	1549	1549		64.207	0	1	2822900			52164	205	36384	36437	57454	57454					0.04023917733206872
MPSPKIFR	8	Unmodified	_MPSPKIFR_					0	0	0		ENST00000425384.6_1_6:3183394-3183592:-|nuORF	ENST00000425384.6_1_6:3183394-3183592:-|nuORF	ENST00000425384.6_1_6:3183394-3183592:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.27996826171875	2	488.275855	974.537157	-0.74024	-0.00036144	-3.4948	-0.0017064	-4.2351	-0.0020679	488.273957837597	23.558	1.0275	23.497	23.267	24.295	-0.06086					43	23	3	0	0	0	0.027866	1	911	911		30.504	12.179	1	423230			52165	14065	36385	36438	57455	57455					0.04887025641960463
MPSQNRRR	8	Unmodified	_MPSQNRRR_					0	0	0			REV__ENST00000346329.7_1_11:70244658-70251434:+|nuORF	REV__ENST00000346329.7_1_11:70244658-70251434:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3037719726562	2	522.777616	1043.54068	0.77614	0.00040575	-2.7804	-0.0014535	-2.0043	-0.0010478	523.2782948671664	87.654	0.23697	87.673	87.557	87.794	0.018555					6	5	2	0	0	0	0.027866	1	10949	10949		37.159	0	1	63011	+		52166	30702	36386	36439	57456	57456					0.02065088468543763
MPSRAPIRVW	10	Unmodified	_MPSRAPIRVW_					0	0	0			REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.7376403808594	3	404.893854	1211.65973	0.089754	3.6341E-05	4.0511	0.0016403	4.1409	0.0016766	404.89599581320516	36.213	0.13641	36.213	36.162	36.298	0					5	3	2	0	0	0	0.03519	1	2853	2853		26.063	4.283	1	24709	+		52167	29503	36387	36440	57457	57457					0.06236862373384611
MPSRAPIRVW	10	Unmodified	_MPSRAPIRVW_					0	0	0			REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	404.893854	1211.65973	0.16847	6.8214E-05	5.2591	0.0021294	5.4276	0.0021976	404.8959370593008	36.41	0.44859	36.204	35.953	36.402	-0.20518	0.035228	0.0010009	NaN	26.063	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147580	+		52168	29503	36387	36440							0.06236862373384611
MPSRAPIRVW	10	Unmodified	_MPSRAPIRVW_					0	0	0			REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	404.893854	1211.65973	0.95152	0.00038527	4.3735	0.0017708	5.3251	0.0021561	404.89539456944243	36.307	0.60529	36.09	35.845	36.45	-0.21661	-0.078766	-7.4817E-05	NaN	26.063	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115380	+		52169	29503	36387	36440							0.06236862373384611
MPSRGGEGGWR	11	Unmodified	_MPSRGGEGGWR_					0	0	0		ENST00000397420.7_1_11:838351-838822:+|nuORF	ENST00000397420.7_1_11:838351-838822:+|nuORF	ENST00000397420.7_1_11:838351-838822:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	594.8226318359375	2	595.280189	1188.54582	-0.38882	-0.00023145	2.2726	0.0013529	1.8838	0.0011214	595.2812095996097	52.935	0.76432	53.03	52.792	53.556	0.095669					50	20	4	0	0	0	0.02479	1	5692	5692		61.691	27.519	1	1278900			52170	13594	36388	36441	57458	57458					-0.040906524594902294
MPSRGGEGGWR	11	Unmodified	_MPSRGGEGGWR_					0	0	0		ENST00000397420.7_1_11:838351-838822:+|nuORF	ENST00000397420.7_1_11:838351-838822:+|nuORF	ENST00000397420.7_1_11:838351-838822:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	595.280189	1188.54582	-0.5426	-0.000323	2.5141	0.0014966	1.9715	0.0011736	595.2815719005157	53.427	0.37343	53.168	52.961	53.335	-0.25838	0.073833	-0.00062453	NaN	61.691	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278160			52171	13594	36388	36441							-0.040906524594902294
MPSRGGEGGWR	11	Unmodified	_MPSRGGEGGWR_					0	0	0		ENST00000397420.7_1_11:838351-838822:+|nuORF	ENST00000397420.7_1_11:838351-838822:+|nuORF	ENST00000397420.7_1_11:838351-838822:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	595.280189	1188.54582	-0.47833	-0.00028474	2.0491	0.0012198	1.5708	0.00093507	595.2813441048536	53.356	0.52669	53.166	52.831	53.357	-0.18982	0.071405	-0.0011781	NaN	61.691	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165230			52172	13594	36388	36441							-0.040906524594902294
MPSRSPLPAP	10	Unmodified	_MPSRSPLPAP_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2509155273438	2	526.781502	1051.54845	-1.0036	-0.00052868	-2.3563	-0.0012413	-3.3599	-0.0017699	526.7801725927064	61.826	0.90429	61.649	61.287	62.191	-0.17782					56	22	3	0	0	0	0.03519	1	6968	6968		37.812	21.338	1	2752500			52173	2818	36389	36442	57459	57459					0.024738029454283605
MPSSINLLV	9	Oxidation (M)	_M(Oxidation (M))PSSINLLV_		M(1)PSSINLLV		M(100)PSSINLLV	0	0	1		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.27056884765625	2	495.270435	988.526318	0.75773	0.00037528	-1.2254	-0.00060691	-0.46768	-0.00023163	495.2697298626049	77.876	2.0704	77.634	77.276	79.346	-0.24232					95	48	3	0	0	0	0.12602	1	9312	9312		104.75	11.551	1	6524500			52174	8745	36390	36443	57460	57460		367			0.03159578477038849
MPSTFIPLY	9	Unmodified	_MPSTFIPLY_					0	0	0		ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-2|KMO	ENSG00000117009|ENST00000366559|KMO	ENSG00000117009|ENST00000366559|KMO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7758178710938	2	534.775354	1067.53615	-0.20556	-0.00010993	3.2408	0.0017331	3.0353	0.0016232	534.7769936104708	63.18	0.87325	62.959	62.609	63.482	-0.22097					36	21	2	0	0	0	0.67308	1	7150	7150		47.916	0.25827	1	5481100			52175	3603	36391	36444	57461	57461					0.00508766482403189
MPSVISLARP	10	Unmodified	_MPSVISLARP_					0	0	0		nc|ENSG00000170653|P17544-2|ATF7;nc|ENSG00000170653|P17544-3|ATF7;ENSG00000170653|ENST00000420353|ATF7;nc|ENSG00000170653|P17544-1|ATF7	nc|ENSG00000170653|P17544-2|ATF7	nc|ENSG00000170653|P17544-2|ATF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.8040771484375	2	535.804977	1069.5954	0.083841	4.4922E-05	-0.75164	-0.00040273	-0.6678	-0.00035781	535.8046090517312	66.049	0.73274	66.049	65.529	66.262	0					34	18	2	0	0	0	0.88896	1	7854	7854		54.776	1.8396	1	14482000			52176	8065	36392	36445	57462	57462					0.06338662496591496
MPTMPSMSTMS	11	Unmodified	_MPTMPSMSTMS_					0	0	0			REV__nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	REV__nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	600.3012084960938	2	600.742013	1199.46947	-0.53798	-0.00032319	-1.0633	-0.00063877	-1.6013	-0.00096196	600.7412764612606	60.448	0.48276	60.242	59.938	60.421	-0.20599					23	11	3	0	0	0	0.024749	1	6750	6750		25.574	13.938	1	230790	+		52177	22978	36393	36446	57463	57463					-0.12228296457669785
MPTMRLLSF	9	Oxidation (M)	_MPTM(Oxidation (M))RLLSF_		M(0.003)PTM(0.997)RLLSF		M(-25)PTM(25)RLLSF	0	0	1		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7510986328125	2	556.285563	1110.55657	-0.96686	-0.00053785	0.89359	0.00049709	-0.073273	-4.0761E-05	556.2858244436798	65.002	0.52244	64.8	64.5	65.023	-0.20254					31	12	4	0	0	0	0.024344	1	7418	7418		45.972	25.975	2	480840			52178	12886	36394	36447	57464	57464		479			0.005716138705565754
MPTMRLLSF	9	Oxidation (M)	_MPTM(Oxidation (M))RLLSF_					0	0	1		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.285563	1110.55657	-0.45243	-0.00025168	0.87744	0.00048811	0.42501	0.00023643	556.7860762618253	64.706	0.3009	64.706	64.499	64.8	0	-0.049626	0.00052351	NaN	60.118	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108280			52179	12886	36394	36447				479			0.005716138705565754
MPTMRLLSF	9	Oxidation (M)	_MPTM(Oxidation (M))RLLSF_					0	0	1		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.285563	1110.55657	-0.59792	-0.00033262	-0.088918	-4.9464E-05	-0.68684	-0.00038208	556.2855918964634	64.993	0.6781	64.758	64.373	65.052	-0.2345	0.0030955	-0.00055164	NaN	60.118	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510710			52180	12886	36394	36447				479			0.005716138705565754
MPTMRLLSF	9	Unmodified	_MPTMRLLSF_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.2864990234375	2	548.288105	1094.56166	-0.6166	-0.00033808	0.80517	0.00044147	0.18857	0.00010339	548.288413152201	77.002	0.78613	76.833	76.266	77.052	-0.16854					36	18	3	0	0	0	0.013924	2	9142	9131;9142		167.23	55.58	1	1547300			52181	12886	36394	36448	57465;57466	57466					0.018159177331881438
MPTMRLLSF	9	Unmodified	_MPTMRLLSF_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.288105	1094.56166	0.27164	0.00014894	0.24785	0.0001359	0.5195	0.00028483	548.287941584734	77.156	0.88345	76.888	76.509	77.393	-0.26807	0.0080002	-8.2764E-05	NaN	167.23	37	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1477800			52182	12886	36394	36448							0.018159177331881438
MPTMRLLSF	9	Unmodified	_MPTMRLLSF_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.288105	1094.56166	0.51527	0.00028252	-0.19699	-0.00010801	0.31828	0.00017451	548.287846867355	77.171	0.86855	76.919	76.484	77.353	-0.25162	0.038973	-0.00057057	NaN	167.23	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1364600			52183	12886	36394	36448							0.018159177331881438
MPTSIPGER	9	Unmodified	_MPTSIPGER_					0	0	0		MUC17|p.T2686I|1|0.03|ENSG00000169876|chr7:101039473-101039473|C/T|missense_variant	MUC17|p.T2686I|1|0.03|ENSG00000169876|chr7:101039473-101039473|C/T|missense_variant	MUC17|p.T2686I|1|0.03|ENSG00000169876|chr7:101039473-101039473|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28948974609375	2	494.250034	986.485516	0.42351	0.00020932	0.43199	0.00021351	0.85549	0.00042283	494.2503048925403	61.661	0.46081	61.435	61.189	61.65	-0.22663					15	11	2	0	0	0	0.020546	1	7132	7132		84.916	5.2029	1	581510			52184	18003	36395	36449	57467	57467					-0.008267628425869589
MPTTPQQIV	9	Unmodified	_MPTTPQQIV_					0	0	0			REV__nc|ENSG00000163939|Q86U86-5|PBRM1	REV__nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3154296875	2	507.76806	1013.52157	-0.1777	-9.0229E-05	-1.241	-0.00063016	-1.4187	-0.00072039	507.767360858202	62.96	1.6215	62.96	62.69	64.311	0					72	43	2	0	0	0	0.024418	1	7345	7345		45.972	22.93	1	706300	+		52185	25662	36396	36450	57468	57468					0.015346943342592567
MPTVHYEF	8	Unmodified	_MPTVHYEF_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7337646484375	2	512.233853	1022.45315	-0.12013	-6.1534E-05	-2.3732	-0.0012156	-2.4933	-0.0012772	512.7334593792673	59.176	1.0761	58.988	58.546	59.622	-0.18795					87	26	5	0	0	0	0.46709	2	6527	6527;6535		88.643	30.832	1	3294300			52186	5024	36397	36451	57469;57470	57469					-0.05717550245606162
MPTVHYEF	8	Unmodified	_MPTVHYEF_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7340087890625	2	512.233853	1022.45315	0.47882	0.00024527	-3.0558	-0.0015653	-2.577	-0.00132	512.7331053512468	59.237	1.2333	58.995	58.422	59.655	-0.24165					91	30	5	0	0	0	0.71833	1	6523	6523		65.803	14.468	1	3180300			52187	5024	36397	36451	57471	57471					-0.05717550245606162
MPTVSHLSPV	10	Unmodified	_MPTVSHLSPV_					0	0	0		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7593994140625	2	534.281334	1066.54812	-0.49939	-0.00026681	1.5682	0.00083786	1.0688	0.00057105	534.2823830916515	72.939	0.42458	72.674	72.385	72.81	-0.26479					11	9	2	0	0	0	0.03519	1	8575	8575		42.396	8.2236	1	93372			52188	7767	36398	36452	57472	57472					0.017503832255670204
MPVGRNVL	8	Oxidation (M)	_M(Oxidation (M))PVGRNVL_		M(1)PVGRNVL		M(55)PVGRNVL	0	0	1		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.24993896484375	2	451.249837	900.485122	0.4733	0.00021358	-0.83338	-0.00037606	-0.36008	-0.00016248	451.2495008616712	37.262	1.4207	37.069	36.375	37.796	-0.193					83	36	5	0	0	0	0.85409	1	3000	3000		54.765	6.8491	1	3376200			52189	5598;2675	36399	36453	57473	57473		102			0.03089862228216589
MPVGRNVL	8	Oxidation (M)	_M(Oxidation (M))PVGRNVL_		M(1)PVGRNVL		M(71)PVGRNVL	0	0	1		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2496643066406	2	451.249837	900.485122	-0.90914	-0.00041025	0.83077	0.00037488	-0.078379	-3.5368E-05	451.25010789877774	37.313	1.1127	37.093	36.686	37.799	-0.2195					70	28	3	0	0	0	0.65272	1	2993	2993		71.378	16.613	1	3238700			52190	5598;2675	36399	36453	57474	57474		102			0.03089862228216589
MPVGRNVL	8	Oxidation (M)	_M(Oxidation (M))PVGRNVL_		M(1)PVGRNVL		M(83)PVGRNVL	0	0	1		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.24969482421875	2	451.249837	900.485122	0.011224	5.0648E-06	-0.057357	-2.5882E-05	-0.046133	-2.0818E-05	451.24971751571303	37.221	1.2318	37.012	36.605	37.837	-0.2092					76	31	4	0	0	0	0.52467	3	2968	2938;2968;2980		83.287	9.3125	1	2904100			52191	5598;2675	36399	36453	57475;57476;57477	57476		102			0.03089862228216589
MPVGRNVL	8	Unmodified	_MPVGRNVL_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.25225830078125	2	443.25238	884.490207	-0.16194	-7.1778E-05	-0.24853	-0.00011016	-0.41047	-0.00018194	443.2522772349572	45.393	1.5763	45.14	44.67	46.246	-0.25252					113	42	4	0	0	0	0.34196	2	4282	4282;4294		105.27	18.334	1	21154000			52192	5598;2675	36399	36454	57478;57479	57478					0.0433416609082542
MPVGRNVL	8	Unmodified	_MPVGRNVL_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.25250244140625	2	443.25238	884.490207	-0.15567	-6.8999E-05	-0.12342	-5.4704E-05	-0.27908	-0.0001237	443.2523324409642	45.349	1.7413	45.137	44.754	46.495	-0.21109					104	48	4	0	0	0	0.43637	2	4275	4275;4287		92.191	20.813	1	20996000			52193	5598;2675	36399	36454	57480;57481	57480					0.0433416609082542
MPVGRNVL	8	Unmodified	_MPVGRNVL_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.25238	884.490207	-0.38995	-0.00017285	0.46782	0.00020736	0.077867	3.4515E-05	443.2524055874306	45.291	0.44482	45.142	44.901	45.346	-0.1488	-0.026912	0.00039329	NaN	105.27	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90396			52194	5598;2675	36399	36454							0.0433416609082542
MPVGRNVL	8	Unmodified	_MPVGRNVL_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.25238	884.490207	-0.072905	-3.2315E-05	0.15513	6.876E-05	0.082221	3.6445E-05	443.25238049542077	45.244	0.47813	45.288	44.966	45.444	0.043877	0.11917	0.00011609	NaN	105.27	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120290			52195	5598;2675	36399	36454							0.0433416609082542
MPVHMETKT	9	Unmodified	_MPVHMETKT_					0	0	0		ENST00000497194.6_1_11:71710327-71710360:+|nuORF	ENST00000497194.6_1_11:71710327-71710360:+|nuORF	ENST00000497194.6_1_11:71710327-71710360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.7772827148438	2	537.259545	1072.50454	-0.66849	-0.00035915	-1.3998	-0.00075205	-2.0683	-0.0011112	537.7602385236612	57.187	0.59598	57.187	56.936	57.532	0					19	15	2	0	0	0	0.0245	1	6431	6431		36.447	13.404	1	110840			52196	15583	36400	36455	57482	57482					-0.028815495431899762
MPVHVTVQEG	10	Unmodified	_MPVHVTVQEG_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.8023071289062	2	548.776416	1095.53828	0.13372	7.3382E-05	0.21404	0.00011746	0.34776	0.00019084	548.7762074680629	56.486	0.46999	56.27	55.881	56.351	-0.21607					17	11	2	0	0	0	0.03519	1	6061	6061		27.882	0	1	103270	+		52197	26431	36401	36456	57483	57483					-0.0056680477980535215
MPVHVTVQEG	10	Unmodified	_MPVHVTVQEG_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.776416	1095.53828	0.18771	0.00010301	-6.2624	-0.0034367	-6.0747	-0.0033336	549.2719479624338	56.844	0.11701	56.619	56.544	56.661	-0.2248	0.17466	-0.00086843	NaN	27.882	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51711	+		52198	26431	36401	36456							-0.0056680477980535215
MPVLKVVL	8	Unmodified	_MPVLKVVL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF;LIN54-SEC31A|9|fusion;LIN54-SEC31A|10|fusion;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.7933654785156	2	449.793349	897.572146	0.0033353	1.5002E-06	0.12703	5.7137E-05	0.13036	5.8637E-05	449.7932836906852	70.249	0.53542	69.982	69.662	70.198	-0.26725					31	12	3	0	0	0	0.68535	1	8172	8172		68.485	20.569	1	994490			52199	5266;17915	36402	36457	57484	57484					0.11926268449906274
MPVLKVVL	8	Unmodified	_MPVLKVVL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF;LIN54-SEC31A|9|fusion;LIN54-SEC31A|10|fusion;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.7934875488281	2	449.793349	897.572146	0.001001	4.5025E-07	0.06764	3.0424E-05	0.068641	3.0874E-05	449.7932814473586	70.123	0.69907	69.873	69.483	70.182	-0.25063					37	16	3	0	0	0	0.56067	2	8165	8165;8179		79.939	10.846	1	1360600			52200	5266;17915	36402	36457	57485;57486	57485					0.11926268449906274
MPVLKVVL	8	Unmodified	_MPVLKVVL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF;LIN54-SEC31A|9|fusion;LIN54-SEC31A|10|fusion;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.7933349609375	2	449.793349	897.572146	0.1191	5.357E-05	-0.088637	-3.9868E-05	0.030463	1.3702E-05	449.793155662263	70.049	0.61255	69.827	69.514	70.127	-0.22245					39	14	3	0	0	0	0.56067	2	8138	8138;8154		79.939	10.846	1	1616500			52201	5266;17915	36402	36457	57487;57488	57487					0.11926268449906274
MPVNTPESP	9	Unmodified	_MPVNTPESP_					0	0	0		nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF	nc|ENSG00000166938|Q8TF46-2|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2613525390625	2	486.228768	970.442982	-0.6111	-0.00029713	0.29722	0.00014452	-0.31388	-0.00015262	486.2287957249985	38.732	1.4391	38.633	37.902	39.341	-0.098751					53	39	2	0	0	0	0.024292	1	3179	3179		68.787	18.762	1	268020			52202	7630	36403	36458	57489	57489					-0.04342157970836524
MPVNTPESP	9	Unmodified	_MPVNTPESP_					0	0	0		nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF	nc|ENSG00000166938|Q8TF46-2|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.228768	970.442982	0.19284	9.3765E-05	-0.49708	-0.00024169	-0.30424	-0.00014793	486.2283890850844	39.256	0.3676	39.03	38.874	39.242	-0.2257	0.16356	-0.0008297	NaN	68.787	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58755			52203	7630	36403	36458							-0.04342157970836524
MPVPVERRPS	10	Unmodified	_MPVPVERRPS_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.3184204101562	2	584.318783	1166.62301	-0.75014	-0.00043832	0.22837	0.00013344	-0.52177	-0.00030488	584.318794468666	49.347	0.9083	49.347	49.005	49.913	0					60	24	4	0	0	0	0.60734	1	5098	5098		76.17	2.0047	1	3939100			52204	9565	36404	36459	57490	57490					0.046365657568230745
MPVPVERRPS	10	Unmodified	_MPVPVERRPS_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.3184814453125	2	584.318783	1166.62301	-1.1063	-0.00064645	0.66882	0.0003908	-0.43751	-0.00025565	584.3190193129171	49.573	0.77612	49.421	49.148	49.924	-0.1512					52	20	4	0	0	0	0.78438	1	5110	5110		61.691	8.7546	1	3667000			52205	9565	36404	36459	57491	57491					0.046365657568230745
MPVPVERRPS	10	Unmodified	_MPVPVERRPS_					0	0	0		nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000186625|ENST00000367411|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	nc|ENSG00000186625|O75449-2|KATNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.3191528320312	2	584.318783	1166.62301	-1.027	-0.00060009	0.73331	0.00042849	-0.29368	-0.0001716	584.319098049708	49.237	0.81818	49.311	49.022	49.84	0.074192					58	21	4	0	0	0	0.78438	1	5003	5003		61.691	3.4614	1	3803800			52206	9565	36404	36459	57492	57492					0.046365657568230745
MPVRRETN	8	Unmodified	_MPVRRETN_					0	0	0		ENST00000495184.5_1_9:286487-368312:+|nuORF	ENST00000495184.5_1_9:286487-368312:+|nuORF	ENST00000495184.5_1_9:286487-368312:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.32122802734375	2	501.761101	1001.50765	0.81097	0.00040691	2.0518	0.0010295	2.8627	0.0014364	501.76187022955406	63.012	0.82251	63.066	62.515	63.338	0.054104					37	20	3	0	0	0	0.027866	1	7309	7309		37.159	0	1	568520			52207	15546	36405	36460	57493	57493					0.006954616258212809
MPVRTLFPE	9	Unmodified	_MPVRTLFPE_					0	0	0		nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.8131103515625	2	545.291702	1088.56885	-0.57077	-0.00031124	0.39589	0.00021587	-0.17489	-9.5365E-05	545.2921921422891	53.912	1.1488	53.912	53.474	54.623	0					50	32	2	0	0	0	0.024261	1	5847	5847		30.318	0	1	2256000			52208	18838	36406	36461	57494	57494					0.0281097360525564
MPVVAFRFL	9	Unmodified	_MPVVAFRFL_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2	ENSG00000104043|ENST00000284509|ATP8B4;ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7940673828125	2	540.307155	1078.59976	-0.15906	-8.5944E-05	3.3093	0.001788	3.1502	0.0017021	540.3088602461794	51.825	0.65759	51.707	51.281	51.939	-0.11875					38	17	3	0	0	0	0.024354	1	5288	5288		47.916	0	1	314150			52209	2538;5659	36407	36462	57495	57495					0.06360171710161922
MPVVVPSAPE	10	Unmodified	_MPVVVPSAPE_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7660522460938	2	513.270435	1024.52632	-0.52507	-0.00026951	-4.1146	-0.0021119	-4.6396	-0.0023814	513.2687894126938	79.477	1.6634	79.495	78.946	80.609	0.018677					91	39	4	0	0	0	0.85955	1	9744	9744		56.721	1.9447	1	7139400			52210	1353	36408	36463	57496	57496					0.015035784770134342
MPWICVPR	8	Unmodified	_MPWICVPR_					0	0	0		ENST00000459764.1_1_10:102747580-102749466:+|nuORF	ENST00000459764.1_1_10:102747580-102749466:+|nuORF	ENST00000459764.1_1_10:102747580-102749466:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2904968261719	2	501.256608	1000.49866	-0.051737	-2.5934E-05	0.83927	0.00042069	0.78753	0.00039475	501.7574353003757	86.481	0.30417	86.436	86.293	86.597	-0.045105					9	6	2	0	0	0	0.027866	1	10833	10833		42.474	30.268	1	34138			52211	14635	36409	36464	57497	57497					-0.0015660326420174897
MPWKVWQRRRR	11	Unmodified	_MPWKVWQRRRR_					0	0	0		ENST00000509200.5_1_17:47574227-47574383:+|nuORF	ENST00000509200.5_1_17:47574227-47574383:+|nuORF	ENST00000509200.5_1_17:47574227-47574383:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.8860168457031	4	400.479486	1597.88884	1.098	0.00043974	-1.3116	-0.00052527	-0.21357	-8.5528E-05	400.4787308111982	54.962	0.43287	54.731	54.494	54.927	-0.23087					22	11	3	0	0	0	0.024873	1	5878	5878		3.2113	0	1	162040			52212	15800	36410	36465	57498	57498					0.11380874389942619
MPWPPKVPR	9	Unmodified	_MPWPPKVPR_					0	0	0		SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|3|1|sense	SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|3|1|sense	SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|3|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.82861328125	2	554.310229	1106.60591	-1.3567	-0.00075203	3.0105	0.0016688	1.6538	0.00091673	554.3112079028339	91.169	0.7124	91.02	90.813	91.525	-0.14871					32	16	3	0	0	0	0.024412	1	11141	11141		17.365	0	1	306080			52213	37981	36411	36466	57499	57499					0.0568668994167183
MPWRSDPS	8	Unmodified	_MPWRSDPS_					0	0	0			REV__ENST00000433861.6_2_3:9773672-9775817:+|nuORF	REV__ENST00000433861.6_2_3:9773672-9775817:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2588806152344	2	488.221277	974.428001	-0.35737	-0.00017448	0.11245	5.4901E-05	-0.24492	-0.00011958	488.2206976686663	41.628	0.17568	41.651	41.53	41.706	0.023006					5	4	2	0	0	0	0.027866	1	3707	3707		50.025	0	1	91239	+		52214	32414	36412	36467	57500	57500					-0.06023605048164882
MPYKVNPDT	9	Unmodified	_MPYKVNPDT_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.298583984375	2	532.757692	1063.50083	-0.79805	-0.00042516	-3.0597	-0.0016301	-3.8578	-0.0020553	532.75630556392	34.593	0.6816	34.418	34.089	34.771	-0.17557					34	16	3	0	0	0	0.024495	1	2532	2532		34.173	20.035	1	163200			52215	8692	36413	36468	57501	57501					-0.028378960454119806
MPYKVNPDT	9	Unmodified	_MPYKVNPDT_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.757692	1063.50083	-0.98041	-0.00052232	-2.3963	-0.0012767	-3.3767	-0.001799	532.7560383782013	34.633	0.61004	34.633	34.408	35.018	0	0.13748	0.00049711	NaN	34.173	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828970			52216	8692	36413	36468							-0.028378960454119806
MPYKVNPDT	9	Unmodified	_MPYKVNPDT_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.757692	1063.50083	-0.61505	-0.00032767	-3.3156	-0.0017664	-3.9307	-0.0020941	532.7558522848433	34.451	0.65531	34.447	34.152	34.807	-0.0045624	-0.048957	-0.00048242	NaN	34.173	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901050			52217	8692	36413	36468							-0.028378960454119806
MPYKVNPDT	9	Unmodified	_MPYKVNPDT_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.757692	1063.50083	-1.1555	-0.0006156	-2.2628	-0.0012055	-3.4183	-0.0018211	532.7562134474979	34.449	0.69377	34.499	34.253	34.947	0.050255	0.0036546	0.00063941	NaN	34.173	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953730			52218	8692	36413	36468							-0.028378960454119806
MPYKVNPDT	9	Unmodified	_MPYKVNPDT_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.757692	1063.50083	-0.73694	-0.00039261	-2.6712	-0.0014231	-3.4081	-0.0018157	532.755862329484	34.725	0.56939	34.518	34.242	34.812	-0.20696	0.022509	0.00020428	NaN	34.173	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159080			52219	8692	36413	36468							-0.028378960454119806
MQARKQLPS	9	Unmodified	_MQARKQLPS_					0	0	0			REV__ENST00000563581.1_1_16:34641293-34641696:-|nuORF	REV__ENST00000563581.1_1_16:34641293-34641696:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7960205078125	2	529.792401	1057.57025	0.53728	0.00028465	3.2482	0.0017209	3.7855	0.0020055	529.7953157578885	54.213	1.175	54.311	53.973	55.148	0.098015					124	33	6	0	0	0	0.39228	1	5858	5858		66.429	0.96389	1	8441800	+		52220	35232	36414	36469	57502	57502					0.04376607694007362
MQAVQAGVVP	10	Unmodified	_MQAVQAGVVP_					0	0	0			REV__PNLIPRP1|p.R141P|1|0.14|ENSG00000187021|chr10:116594821-116594821|G/C|missense_variant	REV__PNLIPRP1|p.R141P|1|0.14|ENSG00000187021|chr10:116594821-116594821|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7927551269531	2	500.268227	998.521901	0.030965	1.5491E-05	0.48162	0.00024094	0.51258	0.00025643	500.26824468950446	52.813	0.64863	52.666	52.447	53.096	-0.14723					22	16	2	0	0	0	0.03519	1	5630	5630		51.335	8.9393	1	243350	+		52221	37388	36415	36470	57503	57503					0.02258114054120597
MQAVVPLASV	10	Unmodified	_MQAVVPLASV_					0	0	0		ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7903137207031	2	507.786253	1013.55795	0.46865	0.00023797	-3.6749	-0.0018661	-3.2062	-0.0016281	507.78431330538507	72.144	0.8021	71.862	71.582	72.384	-0.28156					66	20	4	0	0	0	0.77808	1	8752	8752		62.107	6.6032	1	3271500			52222	1267	36416	36471	57504	57504					0.05171571230960126
MQCLFLILP	9	Unmodified	_MQCLFLILP_					0	0	0			REV__nc|ENSG00000091129|Q92823-3|NRCAM	REV__nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7952270507812	2	539.295399	1076.57624	-0.97764	-0.00052724	-0.64127	-0.00034583	-1.6189	-0.00087307	539.2950825672216	80.866	1.7038	80.866	80.205	81.909	0					101	41	5	0	0	0	0.29104	1	10110	10110		76.847	4.2267	1	7192800	+		52223	20900	36417	36472	57505	57505					0.04101989881314694
MQCVKDDELY	10	Oxidation (M)	_M(Oxidation (M))QCVKDDELY_		M(1)QCVKDDELY		M(65)QCVKDDELY	0	0	1		ENST00000560377.5_1_15:77317886-77324926:+|nuORF;nc|ENSG00000140368|O43586-2|PSTPIP1;ENSG00000140368|ENST00000558012|PSTPIP1	ENST00000560377.5_1_15:77317886-77324926:+|nuORF	ENST00000560377.5_1_15:77317886-77324926:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	630.7755737304688	2	630.267764	1258.52097	-0.63617	-0.00040096	2.6799	0.001689	2.0437	0.0012881	630.2692069330546	70.866	0.59889	70.609	70.439	71.038	-0.25713					32	14	3	0	0	0	0.72729	1	8265	8265		65.465	8.7443	1	739660			52224	16799	36418	36473	57506	57506		543			-0.09794513167753394
MQDNHLEPDL	10	Unmodified	_MQDNHLEPDL_					0	0	0		ENST00000572932.1_1_16:16374097-16382502:+|nuORF	ENST00000572932.1_1_16:16374097-16382502:+|nuORF	ENST00000572932.1_1_16:16374097-16382502:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.2350769042969	3	404.516889	1210.52884	-0.03139	-1.2698E-05	2.2514	0.00091072	2.22	0.00089803	404.5184983633936	32.728	0.29705	32.738	32.556	32.853	0.0096245					14	7	3	0	0	0	0.03519	1	2285	2285		25.126	6.5949	1	61734			52225	17065	36419	36474	57507	57507					-0.06800617855969904
MQEPLREPT	9	Unmodified	_MQEPLREPT_					0	0	0			REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.3071899414062	2	550.773874	1099.53319	0.85108	0.00046875	-3.0749	-0.0016936	-2.2238	-0.0012248	550.7724211163143	63.787	1.2409	63.787	63.522	64.763	0					46	33	2	0	0	0	0.024438	1	7592	7592		44.377	12.847	1	150480	+		52226	31194	36420	36475	57508	57508					-0.012591086424208697
MQEPLREPT	9	Unmodified	_MQEPLREPT_					0	0	0			REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.773874	1099.53319	-0.68495	-0.00037725	-1.6156	-0.00088984	-2.3006	-0.0012671	550.773131857785	64.126	1.5939	63.875	63.518	65.112	-0.25141	0.024322	0.0015048	NaN	44.377	51	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101080	+		52227	31194	36420	36475							-0.012591086424208697
MQEPLREPT	9	Unmodified	_MQEPLREPT_					0	0	0			REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	REV__ENST00000372189.7_1_9:134453434-134453743:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.773874	1099.53319	1.1707	0.00064481	-4.0301	-0.0022197	-2.8593	-0.0015749	550.7714220937318	63.844	0.71627	63.89	63.619	64.335	0.045502	0.039237	-0.0011548	NaN	44.377	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137270	+		52228	31194	36420	36475							-0.012591086424208697
MQEQMAVSNK	10	Unmodified	_MQEQMAVSNK_					0	0	0			REV__NBEA|p.S537N|1|0.76|ENSG00000172915|chr13:35098335-35098335|G/A|missense_variant	REV__NBEA|p.S537N|1|0.76|ENSG00000172915|chr13:35098335-35098335|G/A|missense_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	583.2723388671875	2	583.270641	1164.52673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.376	1	89.239	88.739	89.739	-0.13761								0	0	0	0.75653	1	10905	10905		46.457	5.0302	1		+		52229	36418	36421	36476	57509	57509					-0.048953698654258915
MQESMAQYWK	10	Unmodified	_MQESMAQYWK_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.4981384277344	3	434.526619	1300.55803	-0.11061	-4.8064E-05	-3.325	-0.0014448	-3.4357	-0.0014929	434.52475924632995	40.008	0.1558	39.783	39.696	39.852	-0.225					5	3	2	0	0	0	0.03519	1	3414	3414		32.751	5.1066	1	41736			52230	10144	36422	36477	57510	57510					-0.08022796831346568
MQGCEKATEF	10	Carbamidomethyl (C)	_MQGC(Carbamidomethyl (C))EKATEF_	MQGC(1)EKATEF		MQGC(94)EKATEF		0	1	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.7546997070312	2	600.754824	1199.49509	-0.72662	-0.00043652	0.62431	0.00037506	-0.10231	-6.1463E-05	600.7550524399804	58.771	1.1797	58.771	58.457	59.637	0					71	31	4	0	0	0	0.44975	1	6676	6676		93.598	16.28	1	5674400	+		52231	25665	36423	36478	57511	57511	339				-0.09667362619393316
MQGCEKATEF	10	Carbamidomethyl (C)	_MQGC(Carbamidomethyl (C))EKATEF_	MQGC(1)EKATEF		MQGC(77)EKATEF		0	1	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	600.7546997070312	2	600.754824	1199.49509	0.85774	0.00051529	-0.99351	-0.00059685	-0.13576	-8.1561E-05	600.7540984214238	58.963	1.0901	58.776	58.5	59.59	-0.18705					77	29	5	0	0	0	0.59716	1	6698	6698		77.318	7.69	1	5664000	+		52232	25665	36423	36478	57512	57512	339				-0.09667362619393316
MQGCEKATEF	10	Carbamidomethyl (C)	_MQGC(Carbamidomethyl (C))EKATEF_	MQGC(1)EKATEF		MQGC(85)EKATEF		0	1	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	600.7544555664062	2	600.754824	1199.49509	-0.63297	-0.00038026	0.29673	0.00017826	-0.33625	-0.000202	600.7550341006805	58.637	1.0224	58.728	58.409	59.432	0.091217					86	27	5	0	0	0	0.52765	2	6593	6581;6593		85.161	10.118	1	5666100	+		52233	25665	36423	36478	57513;57514	57514	339				-0.09667362619393316
MQGCEKATEF	10	Carbamidomethyl (C)	_MQGC(Carbamidomethyl (C))EKATEF_					0	1	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	600.754824	1199.49509	-0.72662	-0.00043652	0.62431	0.00037506	-0.10231	-6.1463E-05	600.7550524399804	58.771	1.1797	58.771	58.457	59.637	0	0.012598	0.00062419	NaN	93.598	71	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5674400	+		52234	25665	36423	36478			339				-0.09667362619393316
MQGCEKATEF	10	Carbamidomethyl (C)	_MQGC(Carbamidomethyl (C))EKATEF_					0	1	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	600.754824	1199.49509	0.85774	0.00051529	-0.99351	-0.00059685	-0.13576	-8.1561E-05	600.7540984214238	58.963	1.0901	58.776	58.5	59.59	-0.18705	0.017602	-0.0013196	NaN	93.598	77	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5664000	+		52235	25665	36423	36478			339				-0.09667362619393316
MQGCEKATEF	10	Carbamidomethyl (C)	_MQGC(Carbamidomethyl (C))EKATEF_					0	1	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	600.754824	1199.49509	-0.63297	-0.00038026	0.29673	0.00017826	-0.33625	-0.000202	600.7550341006805	58.637	1.0224	58.728	58.409	59.432	0.091217	-0.0302	0.0002306	NaN	93.598	86	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5666100	+		52236	25665	36423	36478			339				-0.09667362619393316
MQGLKKKLS	9	Unmodified	_MQGLKKKLS_					0	0	0			REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.8146362304688	2	516.815344	1031.61614	-0.46818	-0.00024196	-3.4037	-0.0017591	-3.8719	-0.002001	516.8135027189908	60.243	1.6688	60.243	59.745	61.414	0					103	44	4	0	0	0	0.29158	1	6917	6917		76.774	4.8967	1	3659800	+		52237	27414	36424	36479	57515	57515					0.10159252876246683
MQGWGTPAAH	10	Unmodified	_MQGWGTPAAH_					0	0	0		nc|ENSG00000168237|Q8IVS8-5|GLYCTK;nc|ENSG00000168237|Q8IVS8-4|GLYCTK	nc|ENSG00000168237|Q8IVS8-5|GLYCTK	nc|ENSG00000168237|Q8IVS8-5|GLYCTK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2396850585938	2	528.240001	1054.46545	0.19259	0.00010173	-1.5328	-0.00080966	-1.3402	-0.00070793	528.2390762959993	67.67	3.6582	67.694	66.457	70.115	0.023911					233	93	4	0	0	0	0.87795	1	8083	8083		55.504	0.73953	1	5432900			52238	18491	36425	36480	57516	57516					-0.05960513782565613
MQKPLVPLKTP	11	Unmodified	_MQKPLVPLKTP_					0	0	0		ENST00000471771.5_1_13:28014269-28014434:-|nuORF	ENST00000471771.5_1_13:28014269-28014434:-|nuORF	ENST00000471771.5_1_13:28014269-28014434:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	626.3792724609375	2	626.378309	1250.74206	-0.27721	-0.00017364	2.3269	0.0014575	2.0497	0.0012839	626.3796667254875	104.41	0.99722	104.4	104.07	105.07	-0.0032196					76	28	5	0	0	0	1.0123	1	13314	13314		24.519	0	1	2578900			52239	14965	36426	36481	57517	57517					0.12672339661639853
MQKTIRMW	8	2 Oxidation (M)	_M(Oxidation (M))QKTIRM(Oxidation (M))W_		M(1)QKTIRM(1)W		M(97)QKTIRM(97)W	0	0	2		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2704467773438	2	563.280812	1124.54707	-0.026371	-1.4854E-05	2.7355	0.0015409	2.7091	0.001526	563.2819911248271	63.844	0.64786	63.586	63.425	64.073	-0.25824					22	16	2	0	0	0	0.027866	1	7285	7285		97.473	23.498	1	155390			52240	9896	36427	36482	57518	57518		408;409			-0.01022154414954457
MQKTIRMW	8	2 Oxidation (M)	_M(Oxidation (M))QKTIRM(Oxidation (M))W_					0	0	2		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.280812	1124.54707	1.0256	0.00057769	3.5126	0.0019786	4.5382	0.0025563	563.2824905120826	63.755	0.79308	63.755	63.41	64.203	0	0.061748	0.00037935	NaN	99.375	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178120			52241	9896	36427	36482				408;409			-0.01022154414954457
MQKTIRMW	8	2 Oxidation (M)	_M(Oxidation (M))QKTIRM(Oxidation (M))W_					0	0	2		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.280812	1124.54707	-0.20858	-0.00011749	3.7885	0.002134	3.5799	0.0020165	563.2822234555244	63.951	0.54037	63.699	63.553	64.094	-0.25141	0.0062487	0.00069015	NaN	99.375	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109910			52242	9896	36427	36482				408;409			-0.01022154414954457
MQKTIRMW	8	2 Oxidation (M)	_M(Oxidation (M))QKTIRM(Oxidation (M))W_					0	0	2		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.280812	1124.54707	1.371	0.00077228	3.1584	0.0017791	4.5295	0.0025514	563.2826296730915	63.84	0.35775	63.886	63.653	64.011	0.045502	0.19268	-1.9631E-05	NaN	99.375	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182950			52243	9896	36427	36482				408;409			-0.01022154414954457
MQKTIRMW	8	2 Oxidation (M)	_M(Oxidation (M))QKTIRM(Oxidation (M))W_					0	0	2		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	563.280812	1124.54707	-0.036402	-2.0505E-05	2.0618	0.0011614	2.0254	0.0011409	563.2818450550063	63.732	0.50325	63.54	63.418	63.921	-0.19243	-0.15359	-0.0012551	NaN	99.375	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230750			52244	9896	36427	36482				408;409			-0.01022154414954457
MQLEAMKVDE	10	Unmodified	_MQLEAMKVDE_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.2821655273438	2	597.280674	1192.5468	-1.088	-0.00064982	1.2346	0.00073739	0.14661	8.7567E-05	597.2811757622484	76.595	0.73039	76.367	76.041	76.772	-0.22843					47	17	5	0	0	0	0.34774	1	9408	9408		104.06	0	1	1506100	+		52245	31349	36428	36483	57519	57519					-0.041776189254733254
MQLEAMKVDE	10	Unmodified	_MQLEAMKVDE_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	597.280674	1192.5468	-1.5111	-0.00090254	1.5809	0.00094422	0.069779	4.1677E-05	597.2813826328487	76.347	0.68848	76.347	76.071	76.759	0	-0.016364	0.0011349	NaN	104.06	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1325200	+		52246	31349	36428	36483							-0.041776189254733254
MQLEAMKVDE	10	Unmodified	_MQLEAMKVDE_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	597.280674	1192.5468	-1.088	-0.00064982	1.2346	0.00073739	0.14661	8.7567E-05	597.2811757622484	76.595	0.73039	76.367	76.041	76.772	-0.22843	0.0033631	0.00072121	NaN	104.06	47	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1506100	+		52247	31349	36428	36483							-0.041776189254733254
MQLEAMKVDE	10	Unmodified	_MQLEAMKVDE_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	597.280674	1192.5468	-0.30109	-0.00017984	0.14204	8.4837E-05	-0.15905	-9.4999E-05	597.2805518377488	76.411	0.799	76.422	75.976	76.775	0.011635	0.059171	-0.00058389	NaN	104.06	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1537400	+		52248	31349	36428	36483							-0.041776189254733254
MQLEAMKVDE	10	Unmodified	_MQLEAMKVDE_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	597.280674	1192.5468	-0.34328	-0.00020503	0.322	0.00019233	-0.021272	-1.2705E-05	597.2807266835417	76.672	0.67707	76.404	76.088	76.765	-0.26806	0.040698	-0.00036891	NaN	104.06	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1117300	+		52249	31349	36428	36483							-0.041776189254733254
MQLEAMKVDE	10	Unmodified	_MQLEAMKVDE_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	597.280674	1192.5468	-0.42081	-0.00025134	0.51201	0.00030581	0.091193	5.4468E-05	597.2808452769941	76.579	0.67823	76.328	76.063	76.741	-0.25162	-0.03534	-0.00014195	NaN	104.06	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129000	+		52250	31349	36428	36483							-0.041776189254733254
MQLEAMKVDE	10	Unmodified	_MQLEAMKVDE_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	597.280674	1192.5468	-0.41002	-0.0002449	0.36543	0.00021826	-0.044593	-2.6635E-05	597.2806801691282	76.48	0.84641	76.312	76.012	76.859	-0.16854	-0.051528	-0.00031704	NaN	104.06	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1047700	+		52251	31349	36428	36483							-0.041776189254733254
MQLESVLR	8	Unmodified	_MQLESVLR_					0	0	0		ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	ENSG00000119004|ENST00000356079|CYP20A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.26800537109375	2	488.268227	974.521901	0.072376	3.5339E-05	-0.065707	-3.2083E-05	0.0066692	3.2563E-06	488.2680404588551	46.582	1.0207	46.582	46.09	47.111	0					70	27	4	0	0	0	0.2822	1	4612	4612		119.56	7.9085	1	3063000			52252	3718	36429	36484	57520	57520					0.033621140541072236
MQLLGQLQV	9	Unmodified	_MQLLGQLQV_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF;ENST00000461743.1_1_6:33231479-33231808:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2774047851562	2	515.291702	1028.56885	-0.448	-0.00023085	-4.081	-0.0021029	-4.5289	-0.0023337	515.2895006740157	68.813	0.48157	68.828	68.532	69.014	0.015121					15	12	2	0	0	0	0.023239	1	8172	8172		45.972	0	1	214730			52253	10639	36430	36485	57521	57521					0.05570973605267682
MQLLQRYIE	9	Unmodified	_MQLLQRYIE_					0	0	0			REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	597.2824096679688	2	597.320991	1192.62743	-0.30788	-0.0001839	-1.208	-0.00072159	-1.5159	-0.0009055	597.320219689146	76.315	0.56223	76.327	76.09	76.653	0.011635					30	13	3	0	0	0	0.018983	1	9345	9345		129.68	22.675	1	455740	+		52254	20636	36431	36486	57522	57522					0.03882030179738649
MQLLQRYIE	9	Unmodified	_MQLLQRYIE_					0	0	0			REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	REV__nc|ENSG00000079387|Q9P0U3-2|SENP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	597.320991	1192.62743	-1.5771	-0.00094204	0.30093	0.00017975	-1.2762	-0.00076229	597.3209382099195	76.278	0.60767	76.278	76.071	76.678	0	-0.014214	0.0012121	NaN	129.68	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435580	+		52255	20636	36431	36486							0.03882030179738649
MQLLTELIN	9	Unmodified	_MQLLTELIN_					0	0	0			REV__MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant	REV__MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7971801757812	2	537.796817	1073.57908	-0.34757	-0.00018692	1.8102	0.00097354	1.4627	0.00078662	537.7967378860309	75.724	1.3803	75.736	75.436	76.816	0.011635					109	35	5	0	0	0	0.43628	1	9284	9284		63.534	2.5619	1	12487000	+		52256	20258	36432	36487	57523	57523					0.045235365398411886
MQLRRPSD	8	Unmodified	_MQLRRPSD_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENSG00000162924|ENST00000394479|REL;ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.29119873046875	2	501.761101	1001.50765	-0.3635	-0.00018239	2.3068	0.0011574	1.9433	0.00097506	502.259493322351	84.516	0.8007	84.542	83.988	84.789	0.02655					28	18	2	0	0	0	0.027866	1	10535	10535		37.159	15.199	1	86618			52257	16261;7011	36433	36488	57524	57524					0.006954616258212809
MQNTAVCRY	9	Unmodified	_MQNTAVCRY_					0	0	0			REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2444458007812	2	543.246969	1084.47938	-0.01577	-8.5669E-06	-1.0413	-0.00056566	-1.057	-0.00057423	543.2444413470183	67.132	3.6672	66.884	66.511	70.178	-0.24839					172	93	3	0	0	0	0.6504	1	7786	7786		49.442	3.4896	1	2240700	+		52258	19983	36434	36489	57525	57525					-0.059476043457607375
MQPMHRYDV	9	Unmodified	_MQPMHRYDV_					0	0	0		SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant;ENSG00000181449|ENST00000325404|SOX2	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	SOX2|p.V244Sfs*30|1|0.17|ENSG00000181449|chr3:181713089-181713089|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	588.7674560546875	2	588.768068	1175.52158	-1.2854	-0.0007568	0.24498	0.00014424	-1.0404	-0.00061256	588.7680890833624	100.99	0.50631	100.99	100.73	101.24	0					29	11	3	0	0	0	0.32811	1	12927	12927		71.877	7.6702	1	323270			52259	9043	36435	36490	57526	57526					-0.059156289373959225
MQQKYWET	8	Unmodified	_MQQKYWET_					0	0	0		nc|ENSG00000003147|Q05084-2|ICA1;nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1	nc|ENSG00000003147|Q05084-2|ICA1	nc|ENSG00000003147|Q05084-2|ICA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.3271484375	2	557.255317	1112.49608	-0.67163	-0.00037427	3.4356	0.0019145	2.764	0.0015403	557.2567734582843	61.066	0.48747	60.853	60.643	61.131	-0.21339					24	12	3	0	0	0	0.027866	1	6990	6990		55.504	2.1528	1	141930			52260	18027	36436	36491	57527	57527					-0.055667801881554624
MQQWKRAY	8	Unmodified	_MQQWKRAY_					0	0	0			REV__ENSG00000145476|ENST00000378802|CYP4V2	REV__ENSG00000145476|ENST00000378802|CYP4V2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.2926025390625	2	555.779293	1109.54403	-0.62884	-0.00034949	-2.5646	-0.0014253	-3.1934	-0.0017748	555.777492770783	65.629	1.0925	65.378	65.067	66.16	-0.25112					54	19	4	0	0	0	0.027866	1	7476	7476		33.516	6.8227	1	2107900	+		52261	24411	36437	36492	57528	57528					-0.006356614774631453
MQSDDLKLAE	10	Unmodified	_MQSDDLKLAE_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.3113403320312	2	575.276446	1148.53834	-0.21306	-0.00012257	-2.9052	-0.0016713	-3.1182	-0.0017938	575.775564500494	61.228	0.3749	61.014	60.756	61.131	-0.21339					17	9	3	0	0	0	0.03519	1	7004	7004		139.97	26.559	1	74619	+		52262	22745	36438	36493	57529	57529					-0.029988495704628804
MQSHILPMY	9	Unmodified	_MQSHILPMY_					0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7320556640625	2	560.269912	1118.52527	0.37967	0.00021272	1.6676	0.0009343	2.0473	0.001147	560.2705451934461	96.234	1.2962	96.097	95.853	97.149	-0.1367					40	29	2	0	0	0	0.024517	1	11969	11969		19.36	0	1	140520	+		52263	27456	36439	36494	57530	57530					-0.02924959163510721
MQTSSRSNGLS	11	Unmodified	_MQTSSRSNGLS_					0	0	0			REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.2719116210938	2	584.274769	1166.53499	-0.46848	-0.00027372	4.1614	0.0024314	3.6929	0.0021577	584.2769412211395	75.996	0.7612	75.821	75.584	76.345	-0.17548					32	18	3	0	0	0	0.024731	1	9057	9057		37.508	19.184	1	365040	+		52264	24321	36440	36495	57531	57531					-0.041620996244546404
MQTSSRSNGLS	11	Unmodified	_MQTSSRSNGLS_					0	0	0			REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	584.274769	1166.53499	-0.82977	-0.00048482	4.1999	0.0024539	3.3702	0.0019691	584.2769240556266	76.182	0.59193	75.925	75.673	76.265	-0.25758	0.051891	2.4937E-05	NaN	18.531	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312460	+		52265	24321	36440	36495							-0.041620996244546404
MQVARSLFTGA	11	Unmodified	_MQVARSLFTGA_					0	0	0			REV__ENST00000535010.5_1_1:87170570-87185198:+|nuORF	REV__ENST00000535010.5_1_1:87170570-87185198:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.8094482421875	2	590.81079	1179.60703	-0.16894	-9.9814E-05	-2.9725	-0.0017562	-3.1415	-0.001856	590.808999546907	59.322	1.7232	59.073	58.576	60.3	-0.24842					96	43	4	0	0	0	0.40147	1	6539	6539		82.75	2.2959	1	9601600	+		52266	34662	36441	36496	57532	57532					0.02440859519924743
MQVPLYIW	8	Unmodified	_MQVPLYIW_					0	0	0			REV__ENST00000460680.5_1_3:52442544-52443883:-|nuORF	REV__ENST00000460680.5_1_3:52442544-52443883:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3048095703125	2	525.278063	1048.54157	0.024194	1.2709E-05	-1.6568	-0.00087028	-1.6326	-0.00085757	525.7778085914016	69.766	0.62167	69.544	69.226	69.847	-0.22245					29	14	3	0	0	0	0.027866	1	8088	8088		49.211	0	1	218380	+		52267	32854	36442	36497	57533	57533					0.019244900648573093
MRFLAATFL	9	Oxidation (M)	_M(Oxidation (M))RFLAATFL_		M(1)RFLAATFL		M(70)RFLAATFL	0	0	1		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2943115234375	2	543.294245	1084.57394	-0.36512	-0.00019837	0.15612	8.482E-05	-0.209	-0.00011355	543.2943785036323	72.538	0.71785	72.261	71.908	72.626	-0.2769					26	16	2	0	0	0	0.34489	1	8511	8511		69.628	19.603	1	2316300			52268	3751	36443	36498	57534	57534		146			0.0350327746784842
MRFLAATFL	9	Oxidation (M)	_M(Oxidation (M))RFLAATFL_		M(1)RFLAATFL		M(72)RFLAATFL	0	0	1		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.293701171875	2	543.294245	1084.57394	-1.1452	-0.00062217	0.70333	0.00038212	-0.44185	-0.00024006	543.2946847285513	72.382	0.67015	72.184	71.869	72.539	-0.19811					27	15	2	0	0	0	0.32811	3	8475	8465;8475;8488		71.877	14.066	1	2526400			52269	3751	36443	36498	57535;57536;57537	57536		146			0.0350327746784842
MRFLAATFL	9	Unmodified	_MRFLAATFL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2967529296875	2	535.296788	1068.57902	0.29361	0.00015717	-0.088971	-4.7626E-05	0.20463	0.00010954	535.2966101122423	79.797	1.37	79.55	79.112	80.482	-0.2465					76	32	4	0	0	0	0.19099	4	9541	9520;9541;9553;9566		90.37	12.907	1	5415900			52270	3751	36443	36499	57538;57539;57540;57541	57539					0.047475813304799885
MRFLAATFL	9	Unmodified	_MRFLAATFL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.296875	2	535.296788	1068.57902	-0.15992	-8.5602E-05	0.15	8.0293E-05	-0.0099176	-5.3089E-06	535.2967314099936	79.737	1.2944	79.518	79.16	80.454	-0.21923					82	30	4	0	0	0	0.19099	4	9568	9545;9556;9568;9581		90.37	21.583	1	4882300			52271	3751	36443	36499	57542;57543;57544;57545	57544					0.047475813304799885
MRFLAATFL	9	Unmodified	_MRFLAATFL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.296630859375	2	535.296788	1068.57902	-0.35562	-0.00019036	0.4422	0.00023671	0.086588	4.635E-05	535.2968901723351	79.648	1.2514	79.498	79.195	80.446	-0.15051					89	29	5	0	0	0	0.37611	1	9511	9511		67.494	4.1874	1	4361500			52272	3751	36443	36499	57546	57546					0.047475813304799885
MRGLMLVW	8	Unmodified	_MRGLMLVW_					0	0	0		ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7768249511719	2	503.272258	1004.52996	0.31751	0.00015979	-2.8936	-0.0014563	-2.5761	-0.0012965	503.7726887411054	71.182	2.3181	70.976	70.469	72.787	-0.20614					108	55	4	0	0	0	0.99042	1	8328	8328		38.806	1.647	1	1983600			52273	9770	36444	36500	57547	57547					0.027879697698949713
MRGSEGCAY	9	Carbamidomethyl (C)	_MRGSEGC(Carbamidomethyl (C))AY_	MRGSEGC(1)AY		MRGSEGC(74)AY		0	1	0		ENSG00000110852|ENST00000228438|CLEC2B	ENSG00000110852|ENST00000228438|CLEC2B	ENSG00000110852|ENST00000228438|CLEC2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7089233398438	2	515.707676	1029.4008	-0.77643	-0.00040041	3.193	0.0016466	2.4166	0.0012462	515.7093182504212	30.023	1.388	29.845	29.484	30.872	-0.17817					99	32	5	0	0	0	0.31247	1	1859	1859		73.975	7.5455	1	9839000			52274	3069	36445	36501	57548	57548	39				-0.11272456650863205
MRGVVVLRSEA	11	Oxidation (M)	_M(Oxidation (M))RGVVVLRSEA_		M(1)RGVVVLRSEA		M(79)RGVVVLRSEA	0	0	1		ENST00000223324.2_1_7:42971853-42971943:+|nuORF	ENST00000223324.2_1_7:42971853-42971943:+|nuORF	ENST00000223324.2_1_7:42971853-42971943:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.5630798339844	3	411.564173	1231.67069	0.47838	0.00019688	-3.4619	-0.0014248	-2.9836	-0.0012279	411.56297179066684	32.671	2.0773	32.478	31.942	34.019	-0.19261					150	51	4	0	0	0	0.45804	1	2277	2277		79.07	6.9744	1	39520000			52275	11200	36446	36502	57549	57549		464			0.0641221995701926
MRIINEPTAA	10	Unmodified	_MRIINEPTAA_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8162231445312	2	558.297516	1114.58048	-0.092791	-5.1805E-05	1.67	0.00093233	1.5772	0.00088053	558.2976447597082	74.995	0.9867	74.731	74.446	75.433	-0.26326					63	23	5	0	0	0	0.03519	1	8919	8919		42.396	3.1433	1	676340			52276	1094	36447	36503	57550	57550					0.027771706285875553
MRKRLATR	8	Unmodified	_MRKRLATR_					0	0	0			REV__MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|5|1|sense	REV__MER11B_dup443|chr15:88934149-88935234:-|1.5361314367922616|0.0132124581725832|6.86|464.0|5|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.8182983398438	2	516.316377	1030.6182	0.18735	9.6733E-05	0.18873	9.7446E-05	0.37609	0.00019418	516.8186612768842	21.481	0.71918	21.303	21.016	21.735	-0.17721					36	14	5	0	0	0	0.91239	1	674	674		50.025	2.1089	1	565270	+		52277	36361	36448	36504	57551	57551					0.10411726404709043
MRLRRCLT	8	Oxidation (M)	_M(Oxidation (M))RLRRCLT_		M(1)RLRRCLT		M(56)RLRRCLT	0	0	1			REV__ENST00000453178.1_1_1:36181896-36184455:-|nuORF	REV__ENST00000453178.1_1_1:36181896-36184455:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7960205078125	2	532.79442	1063.57429	-1.4075	-0.00074992	3.9139	0.0020853	2.5064	0.0013354	532.7964432291853	35.708	1.0261	35.708	35.38	36.406	0					68	27	4	0	0	0	0.845	1	2772	2772		55.504	9.5523	1	3283300	+		52278	32746	36449	36505	57552	57552		898			0.04504373916051918
MRLRRCLT	8	Oxidation (M)	_M(Oxidation (M))RLRRCLT_		M(1)RLRRCLT		M(56)RLRRCLT	0	0	1			REV__ENST00000453178.1_1_1:36181896-36184455:-|nuORF	REV__ENST00000453178.1_1_1:36181896-36184455:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7958374023438	2	532.79442	1063.57429	-1.448	-0.0007715	3.9624	0.0021111	2.5144	0.0013396	532.796446057668	35.578	1.0327	35.556	35.196	36.229	-0.021763					65	27	4	0	0	0	0.845	1	2732	2732		55.504	11.127	1	2942600	+		52279	32746	36449	36505	57553	57553		898			0.04504373916051918
MRMRQGSI	8	2 Oxidation (M)	_M(Oxidation (M))RM(Oxidation (M))RQGSI_		M(1)RM(1)RQGSI		M(69)RM(69)RQGSI	0	0	2			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.748779296875	2	505.747136	1009.47972	-0.72083	-0.00036456	3.7233	0.001883	3.0024	0.0015185	505.74890201263025	26.724	0.94355	26.805	26.414	27.357	0.081291					71	23	6	0	0	0	0.68164	1	1342	1342		68.787	7.8149	1	2170600	+		52280	34459	36450	36506	57554	57554		936;937			-0.024641846258987243
MRMRQGSI	8	2 Oxidation (M)	_M(Oxidation (M))RM(Oxidation (M))RQGSI_					0	0	2			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	505.747136	1009.47972	-0.49319	-0.00024943	3.4827	0.0017613	2.9895	0.0015119	505.7487851584986	27.087	1.1046	27.087	26.7	27.804	0	0.12271	-3.3392E-05	NaN	68.787	79	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2482000	+		52281	34459	36450	36506				936;937			-0.024641846258987243
MRMRQGSI	8	2 Oxidation (M)	_M(Oxidation (M))RM(Oxidation (M))RQGSI_					0	0	2			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	505.747136	1009.47972	-0.52706	-0.00026656	3.3936	0.0017163	2.8666	0.0014498	505.74875885546084	27.015	0.98312	27.002	26.662	27.645	-0.012983	0.036953	-0.00012342	NaN	68.787	66	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2474500	+		52282	34459	36450	36506				936;937			-0.024641846258987243
MRMRQGSI	8	2 Oxidation (M)	_M(Oxidation (M))RM(Oxidation (M))RQGSI_					0	0	2			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	505.747136	1009.47972	-0.72083	-0.00036456	3.7233	0.001883	3.0024	0.0015185	505.74890201263025	26.724	0.94355	26.805	26.414	27.357	0.081291	-0.15966	0.00020998	NaN	68.787	71	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2170600	+		52283	34459	36450	36506				936;937			-0.024641846258987243
MRNPFGPLK	9	Unmodified	_MRNPFGPLK_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.8115844726562	2	530.292037	1058.56952	0.31207	0.00016549	-2.1647	-0.0011479	-1.8527	-0.00098245	530.2904313106624	68.627	0.67848	68.397	67.958	68.637	-0.23048					25	16	2	0	0	0	0.024021	1	7934	7934		79.451	33.479	1	275170	+		52284	19928	36451	36507	57555	57555					0.04257813044955583
MRNPFGPLK	9	Unmodified	_MRNPFGPLK_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.292037	1058.56952	-0.16083	-8.5289E-05	-1.6131	-0.0008554	-1.7739	-0.00094069	530.2908842940974	68.666	0.46281	68.373	68.171	68.634	-0.29266	-0.010561	6.8858E-06	NaN	79.451	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534500	+		52285	19928	36451	36507							0.04257813044955583
MRNPFGPLK	9	Unmodified	_MRNPFGPLK_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.292037	1058.56952	0.20923	0.00011096	-1.346	-0.00071379	-1.1368	-0.00060283	530.2907838487532	68.397	0.68427	68.416	68.08	68.764	0.018913	0.032183	0.00029011	NaN	79.451	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645400	+		52286	19928	36451	36507							0.04257813044955583
MRNQNSSKYD	10	Unmodified	_MRNQNSSKYD_					0	0	0			REV__nc|ENSG00000101901|Q9NP73-4|ALG13	REV__nc|ENSG00000101901|Q9NP73-4|ALG13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.25872802734375	3	414.855905	1241.54588	-0.29998	-0.00012445	-3.5273	-0.0014633	-3.8272	-0.0015878	415.18904309380275	23.338	0.41307	23.415	23.234	23.647	0.076241					18	9	3	0	0	0	0.03519	1	878	878		32.751	11.065	1	90253	+		52287	21264	36452	36508	57556	57556					-0.06522697250147758
MRPRLTAGP	9	Unmodified	_MRPRLTAGP_					0	0	0		ENST00000306801.7_1_17:78938830-78939313:+|nuORF	ENST00000306801.7_1_17:78938830-78939313:+|nuORF	ENST00000306801.7_1_17:78938830-78939313:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7636413574219	2	499.781836	997.549119	-0.11097	-5.5459E-05	-4.4517	-0.0022249	-4.5627	-0.0022804	499.779358473802	42.994	0.65274	42.854	42.484	43.137	-0.13929					27	17	3	0	0	0	0.024021	1	3981	3981		49.442	14.29	1	486400			52288	12003	36453	36509	57557	57557					0.05024642385160405
MRPRLTAGP	9	Unmodified	_MRPRLTAGP_					0	0	0		ENST00000306801.7_1_17:78938830-78939313:+|nuORF	ENST00000306801.7_1_17:78938830-78939313:+|nuORF	ENST00000306801.7_1_17:78938830-78939313:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.781836	997.549119	-0.55538	-0.00027757	-6.7235	-0.0033603	-7.2789	-0.0036379	500.28165805069636	43.42	0.22123	43.182	43.061	43.282	-0.23736	0.23096	-0.00069656	NaN	49.442	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49287			52289	12003	36453	36509							0.05024642385160405
MRQTPETKL	9	Unmodified	_MRQTPETKL_					0	0	0			REV__ENSG00000162889|ENST00000367103|MAPKAPK2	REV__ENSG00000162889|ENST00000367103|MAPKAPK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3262329101562	2	552.297516	1102.58048	-0.32761	-0.00018094	-1.6792	-0.0009274	-2.0068	-0.0011083	552.2968178752019	53.981	0.53748	53.784	53.523	54.06	-0.19739					26	16	2	0	0	0	0.024418	1	5697	5697		45.972	14.017	1	616740	+		52290	25505	36454	36510	57558	57558					0.03329170628603606
MRREKKRKRKF	11	Unmodified	_MRREKKRKRKF_					0	0	0		ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8347778320312	3	521.656061	1561.94635	-0.37018	-0.00019311	2.2341	0.0011654	1.8639	0.00097234	521.9917626832869	69.987	1.2685	69.987	68.789	70.058	0					43	32	3	0	0	0	0.024876	1	8324	8324		5.6988	2.2901	1	459420			52291	15707	36455	36511	57559	57559					0.1878571659553927
MRREKKRKRKF	11	Unmodified	_MRREKKRKRKF_					0	0	0		ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.9918212890625	3	521.656061	1561.94635	-0.86104	-0.00044917	2.9179	0.0015222	2.0569	0.001073	521.9918641011321	54.942	1.6499	54.796	54.495	56.145	-0.14609					145	44	5	0	0	0	1.0941	2	5863	5863;5888		12.957	7.2587	1	4342600			52292	15707	36455	36511	57560;57561	57560					0.1878571659553927
MRREKKRKRKF	11	Unmodified	_MRREKKRKRKF_					0	0	0		ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.9920043945312	3	521.656061	1561.94635	0.095472	4.9803E-05	1.8983	0.00099025	1.9937	0.00104	521.6568663159914	55.063	1.6168	54.832	54.565	56.182	-0.23087					153	44	5	0	0	0	1.0811	2	5873	5873;5885		16.53	10.209	1	3966600			52293	15707	36455	36511	57562;57563	57562					0.1878571659553927
MRREKKRKRKF	11	Unmodified	_MRREKKRKRKF_					0	0	0		ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	ENST00000504131.6_1_4:170641157-170641199:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	521.656061	1561.94635	0.077827	4.0599E-05	1.9216	0.0010024	1.9995	0.001043	521.6569307740671	55.057	1.7801	54.85	54.468	56.248	-0.20613	0.024317	-0.00054681	NaN	16.53	160	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3508000			52294	15707	36455	36511							0.1878571659553927
MRRWGRRRRIS	11	Unmodified	_MRRWGRRRRIS_					0	0	0		ENST00000272298.11_1_2:47397893-47403686:-|nuORF	ENST00000272298.11_1_2:47397893-47403686:-|nuORF	ENST00000272298.11_1_2:47397893-47403686:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.63421630859375	3	510.632138	1528.87458	0.11702	5.9755E-05	3.7993	0.00194	3.9163	0.0019998	510.6339323208207	102.13	1.4065	101.96	101.05	102.46	-0.17178					85	32	3	0	0	0	1.1045	1	12674	12674		10.104	3.783	1	181380			52295	11652	36456	36512	57564	57564					0.13130221961705502
MRTKLVEM	8	Unmodified	_MRTKLVEM_					0	0	0			REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25	REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2743835449219	2	504.272455	1006.53036	-0.69955	-0.00035277	3.6735	0.0018525	2.974	0.0014997	504.2741904588645	27.025	1.26	26.869	26.464	27.724	-0.15664					102	29	5	0	0	0	0.83003	1	1411	1411		56.721	1.9447	1	5875800	+		52296	24608	36457	36513	57565	57565					0.02735344699090092
MRVHSVKI	8	Unmodified	_MRVHSVKI_					0	0	0			REV__ENST00000576646.7_1_17:1412470-1416845:-|nuORF	REV__ENST00000576646.7_1_17:1412470-1416845:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2877502441406	2	485.286754	968.558955	0.2133	0.00010351	2.8796	0.0013974	3.0929	0.0015009	485.28829372610755	18.064	2.2094	17.932	17.464	19.674	-0.13147					99	44	5	0	0	0	0.95679	1	218	218		44.117	3.3386	1	6599700	+		52297	23270	36458	36514	57566	57566					0.07341830390544146
MRWLGVNP	8	Unmodified	_MRWLGVNP_					0	0	0		ENST00000507866.6_1_4:7743315-7743591:+|nuORF	ENST00000507866.6_1_4:7743315-7743591:+|nuORF	ENST00000507866.6_1_4:7743315-7743591:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7591247558594	2	486.75783	971.501106	-0.10507	-5.1143E-05	2.4493	0.0011922	2.3442	0.0011411	486.7590262010669	37.299	1.0333	37.236	36.904	37.937	-0.063385					50	28	3	0	0	0	0.87148	1	3025	3025		53.351	7.3792	1	14103000			52298	15771	36459	36515	57567	57567					0.014215684651048832
MRWWQFCRWER	11	Unmodified	_MRWWQFCRWER_					0	0	0			REV__ENST00000430334.7_1_17:43555485-43568071:-|nuORF	REV__ENST00000430334.7_1_17:43555485-43568071:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.279541015625	3	561.930973	1682.77109	0.38348	0.00021549	-3.2421	-0.0018218	-2.8586	-0.0016063	562.2637837230499	84.894	0.24791	84.757	84.62	84.868	-0.13762					7	5	2	0	0	0	0.024902	1	10260	10260		3.2113	0.35952	1	135610	+		52299	32353	36460	36516	57568	57568					-0.04298446260986566
MRYVALLV	8	Unmodified	_MRYVALLV_					0	0	0			REV__ENSG00000203663|ENST00000641771|OR2L2	REV__ENSG00000203663|ENST00000641771|OR2L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2868347167969	2	482.786056	963.557558	0.13856	6.6895E-05	-1.3253	-0.00063983	-1.1867	-0.00057293	482.7877098842302	20.506	0.54356	20.283	20.02	20.564	-0.22344					28	10	4	0	0	0	1.0133	1	529	529		35.201	0	1	304590	+		52300	28536	36461	36517	57569	57569					0.07432196301783733
MSCGLVLLW	9	Unmodified	_MSCGLVLLW_					0	0	0		ENST00000367023.5_2_1:209941892-209941919:+|nuORF	ENST00000367023.5_2_1:209941892-209941919:+|nuORF	ENST00000367023.5_2_1:209941892-209941919:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.26507568359375	2	511.264099	1020.51364	0.21794	0.00011143	-1.1618	-0.00059401	-0.94389	-0.00048258	511.26342004372117	81.146	2.8787	80.908	80.531	83.409	-0.23784					138	67	4	0	0	0	0.14199	1	9851	9851		101.21	1.8366	1	8783100			52301	12834	36462	36518	57570	57570					0.0042084381313998165
MSCGLVLLW	9	Unmodified	_MSCGLVLLW_					0	0	0		ENST00000367023.5_2_1:209941892-209941919:+|nuORF	ENST00000367023.5_2_1:209941892-209941919:+|nuORF	ENST00000367023.5_2_1:209941892-209941919:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.26422119140625	2	511.264099	1020.51364	0.11573	5.9167E-05	-1.2346	-0.00063119	-1.1188	-0.00057202	511.263426838151	81.166	2.8244	80.973	80.561	83.385	-0.19333					137	66	4	0	0	0	0.29104	1	9852	9852		76.847	2.5916	1	6885400			52302	12834	36462	36518	57571	57571					0.0042084381313998165
MSCLGLLWI	9	Unmodified	_MSCLGLLWI_					0	0	0		ENST00000446228.5_1_2:162758621-162834241:+|nuORF;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10	ENST00000446228.5_1_2:162758621-162834241:+|nuORF	ENST00000446228.5_1_2:162758621-162834241:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.29736328125	2	518.271924	1034.52929	0.3343	0.00017326	-2.2852	-0.0011844	-1.9509	-0.0010111	518.7717745340684	102.6	0.17161	102.42	102.33	102.5	-0.17179					6	3	2	0	0	0	0.022643	1	12731	12731		88.643	0	1	25636			52303	5726	36463	36519	57572	57572					0.013411303301836597
MSCPIPAWR	9	Unmodified	_MSCPIPAWR_					0	0	0			REV__nc|ENSG00000134755|Q02487-2|DSC2;REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.7592163085938	2	530.756972	1059.49939	-0.84083	-0.00044628	3.9148	0.0020778	3.0739	0.0016315	530.758924175091	96.829	1.243	96.829	96.44	97.683	0					62	27	4	0	0	0	0.59099	1	12341	12341		53.351	3.9099	1	585380	+		52304	23475;23479	36464	36520	57573	57573					-0.027978086151733805
MSDAGEMDNV	10	Unmodified	_MSDAGEMDNV_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.7769775390625	2	534.702257	1067.38996	-1.25	-0.00066839	-1.0892	-0.00058238	-2.3392	-0.0012508	534.7017689716467	46.578	0.13702	46.425	46.342	46.479	-0.15301					5	3	2	0	0	0	0.03519	1	4592	4592		29.17	0	1	48146	+		52305	27081	36465	36521	57574	57574					-0.1410390381581692
MSDHLSIKPV	10	Unmodified	_MSDHLSIKPV_					0	0	0		nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3|CECR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.803955078125	2	563.799891	1125.58523	0.65679	0.0003703	3.0563	0.0017231	3.713	0.0020934	563.80213607495	107.12	0.68301	107.12	106.75	107.43	0					35	19	2	0	0	0	1.0271	1	13775	13775		42.396	1.618	1	190150			52306	2102	36466	36522	57575	57575					0.0274605477136447
MSDLLSPLLY	10	Unmodified	_MSDLLSPLLY_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.3052978515625	2	576.304475	1150.5944	0.21201	0.00012218	-0.079166	-4.5624E-05	0.13284	7.6557E-05	576.3041207333528	95.917	0.93153	95.78	95.331	96.262	-0.13689					48	21	3	0	0	0	0.52982	3	11837	11825;11837;11847		84.916	0	1	665330			52307	3885	36467	36523	57576;57577;57578	57577					0.025124033370275356
MSDLLSPLLY	10	Unmodified	_MSDLLSPLLY_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.3052368164062	2	576.304475	1150.5944	0.36194	0.00020858	-0.58903	-0.00033946	-0.22709	-0.00013088	576.3039991751956	95.887	1.1938	95.764	95.29	96.484	-0.12305					52	27	4	0	0	0	0.65054	3	11855	11833;11844;11855		71.296	0	1	777150			52308	3885	36467	36523	57579;57580;57581	57581					0.025124033370275356
MSDLLSPLLY	10	Unmodified	_MSDLLSPLLY_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.3048706054688	2	576.304475	1150.5944	-0.53082	-0.00030592	0.21529	0.00012407	-0.31553	-0.00018184	576.3043312354232	95.99	1.1974	95.833	95.269	96.466	-0.15646					52	27	3	0	0	0	0.30843	2	11839	11829;11839		108.09	0	1	789640			52309	3885	36467	36523	57582;57583	57583					0.025124033370275356
MSDSYLPSYY	10	Unmodified	_MSDSYLPSYY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2576904296875	2	613.257722	1224.50089	-1.2331	-0.00075623	1.6572	0.0010163	0.42406	0.00026006	613.2586060859461	72.595	0.72801	72.318	72.028	72.756	-0.2769					47	16	4	0	0	0	0.34101	1	8506	8506		104.75	51.395	1	1003500			52310	10138	36468	36524	57584	57584					-0.10237940836054804
MSDSYLPSYY	10	Unmodified	_MSDSYLPSYY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.2575073242188	2	613.257722	1224.50089	-0.20642	-0.00012659	0.56791	0.00034827	0.36149	0.00022168	613.2578343953538	72.654	0.93436	72.389	72.001	72.936	-0.26479					50	21	4	0	0	0	0.62431	2	8532	8520;8532		74.255	27.176	1	1014500			52311	10138	36468	36524	57585;57586	57586					-0.10237940836054804
MSDSYLPSYY	10	Unmodified	_MSDSYLPSYY_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2578125	2	613.257722	1224.50089	-0.70529	-0.00043253	0.78502	0.00048142	0.079727	4.8893E-05	613.2580475026425	72.445	0.79871	72.247	71.869	72.667	-0.1981					54	18	4	0	0	0	0.82838	2	8483	8483;8495		58.782	19.976	1	1166800			52312	10138	36468	36524	57587;57588	57587					-0.10237940836054804
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.7314453125	2	556.731871	1111.44919	-0.11965	-6.6612E-05	-0.35945	-0.00020012	-0.4791	-0.00026673	556.7315575326618	32.42	0.83964	32.184	31.782	32.622	-0.23666					46	19	4	0	0	0	0.027736	2	2237	2225;2237		143.37	58.014	1	1558700			52313	7775	36469	36525	57589;57590	57590					-0.10207684529973449
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.7317504882812	2	556.731871	1111.44919	0.40311	0.00022442	-0.33717	-0.00018771	0.065943	3.6712E-05	556.731466985259	32.534	0.92062	32.341	31.942	32.863	-0.19261					55	21	4	0	0	0	0.016249	2	2232	2232;2244		155.58	70.225	1	1433400			52314	7775	36469	36525	57591;57592	57591					-0.10207684529973449
MSEDKPQDY	9	Unmodified	_MSEDKPQDY_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.7315063476562	2	556.731871	1111.44919	-0.47201	-0.00026278	0.50341	0.00028027	0.031401	1.7482E-05	556.7319194673549	32.302	0.74344	32.145	31.861	32.605	-0.15772					45	17	4	0	0	0	0.034407	3	2201	2191;2201;2215		138.06	52.703	1	1484600			52315	7775	36469	36525	57593;57594;57595	57594					-0.10207684529973449
MSEEGHVLSA	10	Unmodified	_MSEEGHVLSA_					0	0	0		ENST00000259808.8_1_6:3113922-3114000:+|nuORF	ENST00000259808.8_1_6:3113922-3114000:+|nuORF	ENST00000259808.8_1_6:3113922-3114000:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.24072265625	2	530.242406	1058.47026	-1.6646	-0.00088263	-1.1604	-0.0006153	-2.825	-0.0014979	530.2417220414414	110.58	0.98775	110.44	109.89	110.88	-0.13983					75	39	2	0	0	0	1.1197	1	13560	13560		20.947	2.6225	1	68316			52316	11438	36470	36526	57596	57596					-0.056636744304341846
MSEIKELLE	9	Unmodified	_MSEIKELLE_					0	0	0			REV__ENSG00000171115|ENST00000307271|GIMAP8	REV__ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2860717773438	2	546.286282	1090.55801	-1.3975	-0.00076342	1.0551	0.0005764	-0.34235	-0.00018702	546.286669597436	84.326	0.55037	84.254	83.917	84.468	-0.072769					41	12	4	0	0	0	0.19099	1	10543	10543		90.37	2.6155	1	2251600	+		52317	26545	36471	36527	57597	57597					0.01635526440304602
MSELAKMDV	9	Unmodified	_MSELAKMDV_					0	0	0			REV__ENST00000561970.1_1_16:75284582-75284705:-|nuORF	REV__ENST00000561970.1_1_16:75284582-75284705:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.76934814453125	2	512.246103	1022.47765	-0.3992	-0.00020449	0.37963	0.00019447	-0.019567	-1.0023E-05	512.2461427121222	68.593	1.8016	68.593	67.908	69.71	0					79	46	3	0	0	0	0.024477	1	8293	8293		14.865	0	1	914820	+		52318	35186	36472	36528	57598	57598					-0.032686581543771354
MSEVMAKMK	9	Unmodified	_MSEVMAKMK_					0	0	0			REV__nc|nan|Q8ND61-2|C3orf20	REV__nc|nan|Q8ND61-2|C3orf20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7598266601562	2	527.758323	1053.50209	-1.1533	-0.00060866	3.6227	0.0019119	2.4694	0.0013033	527.7599833521572	80.611	1.4669	80.611	80.163	81.63	0					67	35	4	0	0	0	0.16468	1	10026	10026		96.19	24.895	1	1238500	+		52319	23204	36473	36529	57599	57599					-0.02251721272523355
MSFFRRKV	8	Unmodified	_MSFFRRKV_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.8001708984375	2	535.800029	1069.5855	-0.70253	-0.00037641	1.9157	0.0010264	1.2131	0.00065	535.8007287841689	55.335	1.1436	55.129	54.502	55.646	-0.20623					79	31	4	0	0	0	0.68535	1	5917	5917		68.485	6.3773	1	6338100			52320	2917	36474	36530	57600	57600					0.0534951928184455
MSFGWRKF	8	Unmodified	_MSFGWRKF_					0	0	0			REV__ENST00000470959.1_1_3:47868940-47872365:+|nuORF	REV__ENST00000470959.1_1_3:47868940-47872365:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7869873046875	2	529.765655	1057.51676	0.29327	0.00015536	3.6012	0.0019078	3.8945	0.0020632	529.7676737395207	91.101	0.20208	90.962	90.903	91.105	-0.13942					7	4	2	0	0	0	0.027866	1	11161	11161		25.45	3.7478	1	138020	+		52321	33164	36475	36531	57601	57601					-0.009701450178454252
MSFLVASQTVQ	11	Unmodified	_MSFLVASQTVQ_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;ENST00000470645.5_1_7:150733061-150737597:+|nuORF	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.8630676269531	3	404.209396	1209.60636	-0.49168	-0.00019874	-3.9392	-0.0015923	-4.4309	-0.001791	404.2080394938652	27.889	0.19836	27.737	27.61	27.808	-0.15195					5	4	2	0	0	0	0.024742	1	1554	1554		38.714	18.684	1	30346			52322	9964	36476	36532	57602	57602					0.009940200802020627
MSFSDFLF	8	Unmodified	_MSFSDFLF_					0	0	0		nc|ENSG00000149179|Q9H6J7-3|CSTPP1;ENST00000525895.5_1_11:46958334-47183186:+|nuORF;nc|ENSG00000149179|Q9H6J7-4|CSTPP1;ENSG00000149179|ENST00000278460|CSTPP1;nc|ENSG00000149179|Q9H6J7-2|CSTPP1;ENST00000529980.5_1_11:47159254-47177376:+|nuORF;ENST00000527234.5_1_11:46958304-47179413:+|nuORF	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2535400390625	2	497.222954	992.431355	-0.21438	-0.00010659	-0.83562	-0.00041549	-1.05	-0.00052208	497.22243430319304	49.332	0.65408	49.179	48.864	49.518	-0.15276					26	17	2	0	0	0	0.027866	1	5117	5117		79.939	39.367	1	315990			52323	6069	36477	36533	57603	57603					-0.06516354994175799
MSFSDFLF	8	Unmodified	_MSFSDFLF_					0	0	0		nc|ENSG00000149179|Q9H6J7-3|CSTPP1;ENST00000525895.5_1_11:46958334-47183186:+|nuORF;nc|ENSG00000149179|Q9H6J7-4|CSTPP1;ENSG00000149179|ENST00000278460|CSTPP1;nc|ENSG00000149179|Q9H6J7-2|CSTPP1;ENST00000529980.5_1_11:47159254-47177376:+|nuORF;ENST00000527234.5_1_11:46958304-47179413:+|nuORF	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.222954	992.431355	0.58491	0.00029083	-1.5474	-0.00076942	-0.96252	-0.00047859	497.22196038341036	49.115	0.60944	49.115	48.899	49.508	0	-0.018651	-0.00085453	NaN	79.939	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295390			52324	6069	36477	36533							-0.06516354994175799
MSFSDFLF	8	Unmodified	_MSFSDFLF_					0	0	0		nc|ENSG00000149179|Q9H6J7-3|CSTPP1;ENST00000525895.5_1_11:46958334-47183186:+|nuORF;nc|ENSG00000149179|Q9H6J7-4|CSTPP1;ENSG00000149179|ENST00000278460|CSTPP1;nc|ENSG00000149179|Q9H6J7-2|CSTPP1;ENST00000529980.5_1_11:47159254-47177376:+|nuORF;ENST00000527234.5_1_11:46958304-47179413:+|nuORF	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	nc|ENSG00000149179|Q9H6J7-3|CSTPP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.222954	992.431355	-1.1125	-0.00055316	0.023362	1.1616E-05	-1.0891	-0.00054155	497.2229761879582	49.032	0.54819	49.106	48.842	49.391	0.074196	-0.027217	0.00070754	NaN	79.939	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263830			52325	6069	36477	36533							-0.06516354994175799
MSFVLLLPK	9	Unmodified	_MSFVLLLPK_					0	0	0		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2877197265625	2	524.317189	1046.61982	-0.17362	-9.1031E-05	0.63947	0.00033529	0.46586	0.00024426	524.317172312796	27.774	0.52716	27.617	27.391	27.918	-0.15664					24	12	3	0	0	0	0.023596	1	1535	1535		44.117	0	1	130880			52326	9642	36478	36534	57604	57604					0.09837922650103792
MSFVQKGSW	9	Oxidation (M)	_M(Oxidation (M))SFVQKGSW_		M(1)SFVQKGSW		M(160)SFVQKGSW	0	0	1		ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1;ENST00000470167.1_1_2:189839215-189849763:+|nuORF	ENSG00000168542|ENST00000304636|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2575073242188	2	543.257859	1084.50117	-0.50924	-0.00027665	0.011953	6.4938E-06	-0.49729	-0.00027015	543.2576541965317	47.555	1.0691	47.458	46.934	48.003	-0.096649					76	28	3	0	0	0	0.016249	3	4621	4621;4632;4664		155.58	67.408	1	2683100			52327	7837	36479	36535	57605;57606;57607	57605		320			-0.037704763255760554
MSFVQKGSW	9	Oxidation (M)	_M(Oxidation (M))SFVQKGSW_		M(1)SFVQKGSW		M(200)SFVQKGSW	0	0	1		ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1;ENST00000470167.1_1_2:189839215-189849763:+|nuORF	ENSG00000168542|ENST00000304636|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2576904296875	2	543.257859	1084.50117	-0.47888	-0.00026016	-0.16161	-8.7796E-05	-0.64049	-0.00034795	543.2576034784137	47.866	1.2157	47.59	46.971	48.187	-0.27598					77	29	3	0	0	0	0.017348	3	4657	4657;4667;4711		204.62	85.404	1	2931700			52328	7837	36479	36535	57608;57609;57610	57608		320			-0.037704763255760554
MSFVQKGSW	9	Oxidation (M)	_M(Oxidation (M))SFVQKGSW_		M(1)SFVQKGSW		M(170)SFVQKGSW	0	0	1		ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1;ENST00000470167.1_1_2:189839215-189849763:+|nuORF	ENSG00000168542|ENST00000304636|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2571411132812	2	543.257859	1084.50117	-0.58702	-0.0003189	-0.03464	-1.8818E-05	-0.62166	-0.00033772	543.2576771804272	47.641	1.1587	47.454	46.857	48.015	-0.18684					72	30	3	0	0	0	0.013719	4	4643	4632;4643;4669;4681		181.41	85.217	1	2965600			52329	7837	36479	36535	57611;57612;57613;57614	57612		320			-0.037704763255760554
MSFVQKGSW	9	Unmodified	_MSFVQKGSW_					0	0	0		ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1;ENST00000470167.1_1_2:189839215-189849763:+|nuORF	ENSG00000168542|ENST00000304636|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2605590820312	2	535.260402	1068.50625	-1.0822	-0.00057927	0.88955	0.00047614	-0.19268	-0.00010313	535.260788367921	55.419	0.91843	55.272	54.948	55.867	-0.14609					76	25	4	0	0	0	0.0086463	5	5968	5935;5946;5958;5968;5982		248.96	94.432	1	13343000			52330	7837	36479	36536	57615;57616;57617;57618;57619	57618					-0.02526172462944487
MSFVQKGSW	9	Unmodified	_MSFVQKGSW_					0	0	0		ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1;ENST00000470167.1_1_2:189839215-189849763:+|nuORF	ENSG00000168542|ENST00000304636|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.2604370117188	2	535.260402	1068.50625	-0.551	-0.00029493	0.21109	0.00011299	-0.33991	-0.00018194	535.2603916322536	55.449	1.1762	55.218	54.927	56.103	-0.23087					97	32	5	0	0	0	0.014478	5	5950	5941;5950;5962;5973;5989		204.42	83.556	1	13810000			52331	7837	36479	36536	57620;57621;57622;57623;57624	57621					-0.02526172462944487
MSFVQKGSW	9	Unmodified	_MSFVQKGSW_					0	0	0		ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1;ENST00000470167.1_1_2:189839215-189849763:+|nuORF	ENSG00000168542|ENST00000304636|COL3A1	ENSG00000168542|ENST00000304636|COL3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2603759765625	2	535.260402	1068.50625	-0.9572	-0.00051235	0.69605	0.00037257	-0.26115	-0.00013978	535.2606234428987	55.464	1.1813	55.248	54.857	56.038	-0.21551					90	32	4	0	0	0	0.013442	5	5949	5927;5939;5949;5962;5975		218.73	97.862	1	13404000			52332	7837	36479	36536	57625;57626;57627;57628;57629	57627					-0.02526172462944487
MSGHVPSEL	9	Unmodified	_MSGHVPSEL_					0	0	0			REV__ENSG00000174175|ENST00000263686|SELP	REV__ENSG00000174175|ENST00000263686|SELP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26348876953125	2	478.728935	955.443317	-0.86312	-0.0004132	0.30107	0.00014413	-0.56205	-0.00026907	478.72895964524713	39.218	1.2137	39.241	38.492	39.706	0.023727					48	32	2	0	0	0	0.02435	1	3270	3270		60.972	16.441	1	182240	+		52333	26839	36480	36537	57630	57630					-0.03618738250975184
MSHNKGLV	8	Unmodified	_MSHNKGLV_					0	0	0		ENST00000476025.5_1_16:11118684-11133620:+|nuORF	ENST00000476025.5_1_16:11118684-11133620:+|nuORF	ENST00000476025.5_1_16:11118684-11133620:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2427978515625	2	443.234187	884.453822	-0.68843	-0.00030513	-3.0855	-0.0013676	-3.7739	-0.0016727	443.2329596712268	38.18	0.26386	38.098	37.918	38.182	-0.082516					12	7	3	0	0	0	0.027866	1	3175	3175		51.335	14.307	1	308690			52334	15079	36481	36538	57631	57631					0.00697289194113182
MSIEEYLGK	9	Unmodified	_MSIEEYLGK_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.7772827148438	2	535.26535	1068.51615	-0.36429	-0.00019499	3.7274	0.0019952	3.3631	0.0018002	535.2671916394155	46.646	1.1815	46.646	46.378	47.56	0					113	32	5	0	0	0	0.024374	1	4615	4615		58.782	20.97	1	3693000	+		52335	21301	36482	36539	57632	57632					-0.015370292482202785
MSILMGTDGM	10	Unmodified	_MSILMGTDGM_					0	0	0		ENSG00000214787|ENST00000651255|MS4A4E	ENSG00000214787|ENST00000651255|MS4A4E	ENSG00000214787|ENST00000651255|MS4A4E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2737426757812	2	528.232138	1054.44972	-1.4311	-0.00075593	2.7871	0.0014722	1.356	0.00071631	528.2326754642721	91.978	0.28996	91.978	91.772	92.062	0					11	6	2	0	0	0	0.03519	1	11660	11660		99.375	53.403	1	122040			52336	10568	36483	36540	57633	57633					-0.07532304406117873
MSILPMEL	8	Oxidation (M)	_M(Oxidation (M))SILPMEL_		M(1)SILPMEL		M(54)SILPM(-54)EL	0	0	1		ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.24072265625	2	475.240289	948.466026	1.5897	0.00075548	-0.84252	-0.0004004	0.74715	0.00035508	475.23975888139006	37.312	1.0033	37.312	36.966	37.969	0					74	27	4	0	0	0	0.56067	1	3033	3033		79.939	8.5613	2	1634900			52337	9979	36484	36541	57634	57634		418			-0.010268551777130597
MSILPMEL	8	Oxidation (M)	_M(Oxidation (M))SILPMEL_		M(1)SILPMEL		M(84)SILPM(-84)EL	0	0	1		ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.2405090332031	2	475.240289	948.466026	0.58223	0.0002767	0.06061	2.8804E-05	0.64284	0.0003055	475.24019547927327	37.168	1.2539	37.105	36.749	38.003	-0.063385					81	34	4	0	0	0	0.30538	1	2999	2999		110.34	21.694	2	1714600			52338	9979	36484	36541	57635	57635		418			-0.010268551777130597
MSILPMEL	8	Oxidation (M)	_M(Oxidation (M))SILPMEL_		M(1)SILPMEL		M(84)SILPM(-84)EL	0	0	1		ENST00000479510.2_1_6:33387852-33406697:+|nuORF;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	ENST00000479510.2_1_6:33387852-33406697:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.24078369140625	2	475.240289	948.466026	0.19667	9.3465E-05	0.42211	0.0002006	0.61878	0.00029407	475.240359253048	37.232	1.2448	37.265	36.957	38.202	0.032269					74	33	3	0	0	0	0.39824	1	2972	2972		97.473	6.696	2	1406800			52339	9979	36484	36541	57636	57636		418			-0.010268551777130597
MSIPKCKFLH	10	Unmodified	_MSIPKCKFLH_					0	0	0			REV__ENSG00000141252|ENST00000437048|VPS53	REV__ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.81134033203125	3	401.884078	1202.63041	-0.74322	-0.00029869	2.438	0.0009798	1.6948	0.00068111	401.8858115937864	28.871	0.80562	28.721	28.324	29.129	-0.14952					37	18	3	0	0	0	0.03519	1	1666	1666		25.126	0	1	131830	+		52340	24070	36485	36542	57637	57637					0.03719582032886137
MSIRKPQEKS	10	Unmodified	_MSIRKPQEKS_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8115234375	3	401.888657	1202.64414	0.30395	0.00012216	0.22477	9.0333E-05	0.52872	0.00021249	401.88865598752795	27.982	0.77169	27.814	27.61	28.381	-0.16816					33	18	2	0	0	0	0.03519	1	1669	1669		22.562	9.6041	1	423940			52341	8799	36486	36543	57638	57638					0.050925310656793954
MSIRKPQEKS	10	Unmodified	_MSIRKPQEKS_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	401.888657	1202.64414	-0.069703	-2.8013E-05	0.42602	0.00017121	0.35631	0.0001432	401.88878274236083	28.186	0.64408	27.941	27.677	28.322	-0.24524	0.0064404	1.3293E-05	NaN	22.562	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494610			52342	8799	36486	36543							0.050925310656793954
MSIVVMIFL	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))SIVVMIFL_		M(1)SIVVMIFL		M(47)SIVVM(-47)IFL	1	0	1		ENST00000393766.6_1_4:166261517-166262931:+|nuORF	ENST00000393766.6_1_4:166261517-166262931:+|nuORF	ENST00000393766.6_1_4:166261517-166262931:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.7992553710938	2	555.800514	1109.58648	0.01891	1.051E-05	-3.9095	-0.0021729	-3.8906	-0.0021624	555.7980864873917	41.075	1.017	41.098	40.764	41.781	0.023003					64	28	3	0	0	0	0.40179	1	3614	3614		65.803	8.3505	2	2826900			52343	13463	36487	36544	57639	57639		491			0.036065528159042515
MSIYDVST	8	Unmodified	_MSIYDVST_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.22430419921875	2	458.210043	914.405534	0.21082	9.6601E-05	0.87268	0.00039987	1.0835	0.00049647	458.2104067454824	101.7	0.71678	101.57	101.28	102	-0.12576					23	17	2	0	0	0	0.027866	1	12632	12632		35.201	26.378	1	112680			52344	6987	36488	36545	57640	57640					-0.05509249236445157
MSKEEMINLH	10	Unmodified	_MSKEEMINLH_					0	0	0		nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.5348815917969	3	411.198503	1230.57368	-0.0042595	-1.7515E-06	2.3972	0.00098573	2.393	0.00098398	411.19923086845586	47.215	0.80653	47.118	46.825	47.631	-0.096653					33	21	2	0	0	0	0.03519	1	4609	4609		34.087	19.308	1	239780			52345	18464	36489	36546	57641	57641					-0.032385103143042215
MSKKKKAG	8	Unmodified	_MSKKKKAG_					0	0	0		ENSG00000105675|ENST00000262623|ATP4A	ENSG00000105675|ENST00000262623|ATP4A	ENSG00000105675|ENST00000262623|ATP4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.24835205078125	2	439.26803	876.521507	-0.52696	-0.00023148	2.7891	0.0012252	2.2622	0.0009937	439.26904040978883	33.211	0.41765	33.218	33.043	33.461	0.0066261					15	11	2	0	0	0	0.027866	1	2403	2403		16.473	8.2419	1	53122			52346	2706	36490	36547	57642	57642					0.07830739124915453
MSKLEQVVV	9	Unmodified	_MSKLEQVVV_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2825317382812	2	516.791535	1031.56852	-0.63403	-0.00032766	-2.4683	-0.0012756	-3.1023	-0.0016032	516.789988998694	81.887	1.4036	81.887	81.218	82.622	0					82	33	4	0	0	0	0.024523	1	10128	10128		21.96	0.25755	1	768250	+		52347	24983	36491	36548	57643	57643					0.05399553885399655
MSKLRTTCPL	10	Unmodified	_MSKLRTTCPL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3113403320312	2	575.309569	1148.60458	-0.43903	-0.00025258	2.8287	0.0016274	2.3897	0.0013748	575.311027768969	61.021	1.038	60.807	60.273	61.311	-0.21339					78	27	4	0	0	0	0.1587	1	7004	7004		126.24	12.831	1	3824400	+		52348	27006	36492	36549	57644	57644					0.03622687790607415
MSKNILVSSS	10	Unmodified	_MSKNILVSSS_					0	0	0			REV__ENSG00000120278|ENST00000696526|PLEKHG1	REV__ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2551879882812	2	533.284074	1064.5536	-1.065	-0.00056795	0.69401	0.0003701	-0.37099	-0.00019784	533.7882696028558	38.944	0.24073	38.721	38.616	38.857	-0.22311					10	6	2	0	0	0	0.03519	1	3246	3246		23.523	6.8053	1	105620	+		52349	22522	36493	36550	57645	57645					0.023900620173890275
MSKNILVSSS	10	Unmodified	_MSKNILVSSS_					0	0	0			REV__ENSG00000120278|ENST00000696526|PLEKHG1	REV__ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.284074	1064.5536	-0.85527	-0.0004561	-3.5066	-0.00187	-4.3619	-0.0023261	533.2820334816196	38.828	0.69055	38.73	38.437	39.127	-0.098755	-0.094235	-0.0014006	NaN	29.17	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2771300	+		52350	22522	36493	36550							0.023900620173890275
MSKSFSAVFV	10	Unmodified	_MSKSFSAVFV_					0	0	0			REV__ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant	REV__ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3128662109375	2	551.78371	1101.55287	-0.29173	-0.00016097	0.78412	0.00043266	0.49238	0.00027169	551.7840303364035	73.067	0.92043	72.79	72.368	73.289	-0.27689					41	21	3	0	0	0	0.03519	1	8532	8532		24.519	0.99649	1	323960	+		52351	19166	36494	36551	57646	57646					0.006152673683345711
MSLARVEVL	9	Unmodified	_MSLARVEVL_					0	0	0			REV__ENSG00000136931|ENST00000373588|NR5A1	REV__ENSG00000136931|ENST00000373588|NR5A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.81024169921875	2	509.291702	1016.56885	-0.39265	-0.00019997	-2.889	-0.0014714	-3.2817	-0.0016713	509.2899570209138	49.097	0.79895	48.944	48.682	49.481	-0.15277					57	21	4	0	0	0	0.024541	1	5055	5055		10.265	0	1	1614000	+		52352	23707	36495	36552	57647	57647					0.06122973605260995
MSLAVVVGTE	10	Unmodified	_MSLAVVVGTE_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;CAMTA2|p.Q527Sfs*66|1|0.3|ENSG00000108509|chr17:4979743-4979743|G/-|frameshift_variant	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.26641845703125	2	503.267893	1004.52123	-0.96538	-0.00048585	-2.6523	-0.0013348	-3.6177	-0.0018207	503.2665193356901	81.894	1.5029	81.751	81.275	82.778	-0.14248					60	20	5	0	0	0	0.55353	1	9862	9862		82.241	2.7895	1	1579500			52353	2904	36496	36553	57648	57648					0.01915274614395912
MSLDRKTT	8	Unmodified	_MSLDRKTT_					0	0	0		ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	ENSG00000145293|ENST00000273920|ENOPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.25238037109375	2	476.250034	950.485516	0.50852	0.00024218	4.1978	0.0019992	4.7063	0.0022414	476.25186586475587	90.804	0.70289	90.816	90.534	91.237	0.011276					38	16	4	0	0	0	0.56592	1	11432	11432		79.451	8.0731	1	1842400			52354	5803	36497	36554	57649	57649					0.008292371573929813
MSLFGTTSGF	10	Unmodified	_MSLFGTTSGF_					0	0	0		ENSG00000101146|ENST00000395841|RAE1	ENSG00000101146|ENST00000395841|RAE1	ENSG00000101146|ENST00000395841|RAE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3035888671875	2	524.244418	1046.47428	0.22835	0.00011971	-3.4072	-0.0017862	-3.1788	-0.0016665	524.2425245379093	88.236	0.39477	88.105	87.841	88.235	-0.13136					16	9	2	0	0	0	0.03519	1	10757	10757		35.618	3.6634	1	139960			52355	2287	36498	36555	57650	57650					-0.04709584936722422
MSLFTEFQL	9	Unmodified	_MSLFTEFQL_					0	0	0			REV__ENST00000373856.7_1_X:70514098-70514251:+|nuORF	REV__ENST00000373856.7_1_X:70514098-70514251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.26513671875	2	558.275718	1114.53688	0.52562	0.00029344	0.81115	0.00045285	1.3368	0.00074629	558.775943154238	83.873	0.16821	83.662	83.6	83.768	-0.21159					5	3	2	0	0	0	0.024539	1	10115	10115		14.865	0	1	25560	+		52356	31274	36499	36556	57651	57651					-0.01580438868541023
MSLIGLKVSA	10	Unmodified	_MSLIGLKVSA_					0	0	0			REV__ENST00000260665.11_1_2:44201425-44201854:-|nuORF	REV__ENST00000260665.11_1_2:44201425-44201854:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.8035583496094	2	509.801903	1017.58925	0.28849	0.00014708	3.1095	0.0015852	3.398	0.0017323	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	1.1266	1	10287	10287		29.17	0.91578	1	3441300	+		52357	29604	36500	36557	57652	57652					0.08116144265056846
MSLLIRMGI	9	Unmodified	_MSLLIRMGI_					0	0	0		ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2974853515625	2	517.298473	1032.58239	-0.29318	-0.00015166	2.329	0.0012048	2.0358	0.0010531	517.3008452176726	103.14	0.63902	103.13	102.98	103.62	-0.0046082					19	14	2	0	0	0	0.024294	1	13158	13158		29.15	0	1	45859			52358	4486	36501	36558	57653	57653					0.06740508112829957
MSLLKFLA	8	Unmodified	_MSLLKFLA_					0	0	0		MAGEA10|p.R307S|1|0.13|ENSG00000124260|chrX:152134700-152134700|C/A|missense_variant;ENSG00000124260|ENST00000370323|MAGEA10	MAGEA10|p.R307S|1|0.13|ENSG00000124260|chrX:152134700-152134700|C/A|missense_variant	MAGEA10|p.R307S|1|0.13|ENSG00000124260|chrX:152134700-152134700|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.7733154296875	2	461.775157	921.53576	0.17835	8.2356E-05	-4.0089	-0.0018512	-3.8305	-0.0017688	461.7732035959884	101.83	0.7794	101.7	101.41	102.19	-0.12666					39	19	4	0	0	0	0.89627	1	12661	12661		51.335	1.3109	1	870050			52359	4038	36502	36559	57654	57654					0.07185391553196041
MSLLLVLPV	9	Unmodified	_MSLLLVLPV_					0	0	0		ENSG00000214194|ENST00000397764|SMIM30	ENSG00000214194|ENST00000397764|SMIM30	ENSG00000214194|ENST00000397764|SMIM30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.28729248046875	2	492.811739	983.608925	-0.16538	-8.1502E-05	4.4126	0.0021746	4.2472	0.0020931	492.8137960872669	67.429	0.98938	67.141	66.911	67.901	-0.28834					42	24	2	0	0	0	0.024412	1	8096	8096		40.573	19.626	1	1432600			52360	10546	36503	36560	57655	57655					0.11646520275814964
MSLLNFLN	8	Unmodified	_MSLLNFLN_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.2518615722656	2	476.252046	950.489538	-0.45829	-0.00021826	0.85447	0.00040694	0.39618	0.00018868	476.25224270399224	90.785	0.62161	90.785	90.511	91.133	0					42	14	4	0	0	0	0.68164	1	11496	11496		68.787	0	1	1731000			52361	4326	36504	36561	57656	57656					0.012313266511114307
MSLPLLAEV	9	Unmodified	_MSLPLLAEV_					0	0	0			REV__RREB1|p.I602V|1|0.28|ENSG00000124782|chr6:7229903-7229903|A/G|missense_variant	REV__RREB1|p.I602V|1|0.28|ENSG00000124782|chr6:7229903-7229903|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7769775390625	2	486.775354	971.536154	-0.36066	-0.00017556	3.4002	0.0016551	3.0395	0.0014796	486.7769839018573	41.78	1.0672	41.648	41.319	42.386	-0.13219					90	30	5	0	0	0	0.18915	1	3770	3770		90.777	0.40684	1	14812000	+		52362	37452	36505	36562	57657	57657					0.04924766482395171
MSLPLLAEV	9	Unmodified	_MSLPLLAEV_					0	0	0			REV__RREB1|p.I602V|1|0.28|ENSG00000124782|chr6:7229903-7229903|A/G|missense_variant	REV__RREB1|p.I602V|1|0.28|ENSG00000124782|chr6:7229903-7229903|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7435302734375	2	486.775354	971.536154	-0.46034	-0.00022408	3.3597	0.0016354	2.8993	0.0014113	486.77696241305097	41.739	1.2099	41.762	41.429	42.638	0.023006					99	34	5	0	0	0	0.019502	1	3736	3736		111.65	0	1	15813000	+		52363	37452	36505	36562	57658	57658					0.04924766482395171
MSLPLSQTQ	9	Unmodified	_MSLPLSQTQ_					0	0	0			REV__LRFN3|p.V43M|1|0.25|ENSG00000126243|chr19:35939552-35939552|G/A|missense_variant	REV__LRFN3|p.V43M|1|0.25|ENSG00000126243|chr19:35939552-35939552|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7578430175781	2	502.757692	1003.50083	-0.04772	-2.3991E-05	-0.77352	-0.0003889	-0.82124	-0.00041289	502.75708619473335	37.061	0.80747	37.093	36.643	37.45	0.032269					44	20	3	0	0	0	0.42604	1	2952	2952		64.207	0	1	2229700	+		52364	36321	36506	36563	57659	57659					-0.0007789604542267625
MSLQLYLVD	9	Unmodified	_MSLQLYLVD_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.2816772460938	2	541.283543	1080.55253	-0.93534	-0.00050628	-2.42	-0.0013099	-3.3554	-0.0018162	541.2821119204453	80.325	0.86641	80.325	79.994	80.861	0					48	20	4	0	0	0	0.48817	1	9988	9988		60.118	3.3972	1	1589000			52365	6939	36507	36564	57660	57660					0.015478476484986459
MSLQLYLVD	9	Unmodified	_MSLQLYLVD_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2820434570312	2	541.283543	1080.55253	-1.546	-0.00083683	-2.4164	-0.001308	-3.9624	-0.0021448	541.2824909172688	80.506	0.78489	80.355	80.091	80.876	-0.15168					43	18	4	0	0	0	0.6238	1	9976	9976		51.193	3.5354	1	1527700			52366	6939	36507	36564	57661	57661					0.015478476484986459
MSLQTEEQWE	10	Unmodified	_MSLQTEEQWE_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.77685546875	2	640.77681	1279.53907	0.84621	0.00054223	0.29977	0.00019208	1.146	0.00073432	640.7770555088833	51.631	0.98843	51.631	51.323	52.311	0					80	27	5	0	0	0	1.0122	2	5482	5482;5506		44.377	0	1	5709300			52367	194	36508	36565	57662;57663	57662					-0.08952054921383024
MSLQTEEQWE	10	Unmodified	_MSLQTEEQWE_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.77734375	2	640.77681	1279.53907	0.39754	0.00025473	0.7476	0.00047905	1.1451	0.00073378	640.7772868742064	51.806	0.95059	51.659	51.336	52.287	-0.14735					71	26	4	0	0	0	0.91678	1	5482	5482		52.937	11.51	1	5931800			52368	194	36508	36565	57664	57664					-0.08952054921383024
MSLQTEEQWE	10	Unmodified	_MSLQTEEQWE_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	640.7784423828125	2	640.77681	1279.53907	-0.86914	-0.00055693	2.1032	0.0013477	1.2341	0.00079078	640.7781588986275	51.524	0.97329	51.611	51.302	52.275	0.087006					72	26	4	0	0	0	0.99657	1	5396	5396		46.457	6.3986	1	4963500			52369	194	36508	36565	57665	57665					-0.08952054921383024
MSLQTEEQWE	10	Unmodified	_MSLQTEEQWE_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.777587890625	2	640.77681	1279.53907	-1.4331	-0.00091827	2.3606	0.0015126	0.92754	0.00059435	640.7785223008528	51.746	1.5197	51.627	51.242	52.761	-0.11875					95	39	3	0	0	0	0.6365	5	5321	5321;5333;5344;5356;5369		72.879	18.103	1	29765000			52370	194	36508	36565	57666;57667;57668;57669;57670	57666					-0.08952054921383024
MSLQTEEQWE	10	Unmodified	_MSLQTEEQWE_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.7777709960938	2	640.77681	1279.53907	-2.02	-0.0012943	2.5405	0.0016279	0.52058	0.00033358	640.7787977529673	52.01	1.7812	51.741	51.321	53.102	-0.26903					127	46	5	0	0	0	0.77808	3	5349	5349;5361;5385		62.107	9.0185	1	31160000			52371	194	36508	36565	57671;57672;57673	57671					-0.08952054921383024
MSLQTEEQWE	10	Unmodified	_MSLQTEEQWE_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.7781372070312	2	640.77681	1279.53907	0.025178	1.6134E-05	0.52285	0.00033503	0.54803	0.00035116	640.7774598864622	51.87	1.9187	51.686	51.258	53.177	-0.18404					114	49	4	0	0	0	0.69662	4	5327	5327;5338;5349;5361		67.494	21.521	1	29672000			52372	194	36508	36565	57674;57675;57676;57677	57674					-0.08952054921383024
MSLSTIAILN	10	Unmodified	_MSLSTIAILN_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3158569335938	2	531.796817	1061.57908	0.12276	6.5283E-05	1.7075	0.00090807	1.8303	0.00097335	531.7973079409725	97.48	0.62334	97.489	97.015	97.639	0.0089111					18	13	2	0	0	0	0.03519	1	12400	12400		58.23	13.853	1	56526			52373	6209	36509	36566	57678	57678					0.05075536539834502
MSLVLSLLC	9	Unmodified	_MSLVLSLLC_					0	0	0			REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.77191162109375	2	489.771757	977.52896	-0.027489	-1.3463E-05	-0.15399	-7.5421E-05	-0.18148	-8.8884E-05	489.7718343249997	42.854	1.4389	42.715	41.882	43.321	-0.13929					105	40	4	0	0	0	0.67308	1	3949	3949		47.916	0.25827	1	12609000	+		52374	20420	36510	36567	57679	57679					0.03929710610339043
MSLVNKIM	8	Oxidation (M)	_MSLVNKIM(Oxidation (M))_		MSLVNKIM(1)		M(-54)SLVNKIM(54)	0	0	1			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.2521667480469	2	476.253731	950.492909	0.22573	0.0001075	-4.2571	-0.0020275	-4.0314	-0.0019199	476.2513728825211	90.807	1.6316	90.79	90.155	91.787	-0.016716					62	38	4	0	0	0	0.81662	1	11479	11479		57.811	6.4758	2	1543700	+		52375	23329	36511	36568	57680	57680		693			0.01568253433481459
MSLWKILEV	9	Unmodified	_MSLWKILEV_					0	0	0		ENST00000556993.1_1_14:70170458-70170512:+|nuORF	ENST00000556993.1_1_14:70170458-70170512:+|nuORF	ENST00000556993.1_1_14:70170458-70170512:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8157958984375	2	559.817553	1117.62055	0.050072	2.8031E-05	-3.6039	-0.0020175	-3.5538	-0.0019895	559.8155046600118	80.867	2.2167	80.629	80.287	82.504	-0.23784					212	52	6	0	0	0	0.67687	1	9733	9733		47.657	6.8792	1	31546000			52376	16724	36512	36569	57681	57681					0.06644717299172953
MSMREANSK	9	Unmodified	_MSMREANSK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7642211914062	2	527.244426	1052.4743	-0.40495	-0.00021351	1.2075	0.00063667	0.80259	0.00042316	527.2453754599508	62.401	0.35112	62.18	61.965	62.316	-0.22097					13	8	2	0	0	0	0.024438	1	7007	7007		29.17	3.7199	1	210000	+		52377	26563	36513	36570	57682	57682					-0.04983908208396315
MSNKRSNSF	9	Unmodified	_MSNKRSNSF_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2344360351562	2	535.756015	1069.49748	0.17143	9.1846E-05	-4.1181	-0.0022063	-3.9466	-0.0021144	535.7539876801532	67.33	0.58528	67.078	66.873	67.458	-0.25216					20	13	2	0	0	0	0.024397	1	7792	7792		56.721	24.766	1	150420			52378	5482	36514	36571	57683	57683					-0.03449146099410427
MSNKRSNSF	9	Unmodified	_MSNKRSNSF_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.756015	1069.49748	-0.82572	-0.00044239	-3.3007	-0.0017684	-4.1264	-0.0022108	535.7542116439762	67.015	0.65295	67.015	66.714	67.367	0	-0.057143	0.00021112	NaN	56.721	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237720			52379	5482	36514	36571							-0.03449146099410427
MSNKRSNSF	9	Unmodified	_MSNKRSNSF_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.756015	1069.49748	-0.7071	-0.00037884	-3.5851	-0.0019207	-4.2922	-0.0022996	535.7540844227178	67.341	0.51598	67.052	66.791	67.307	-0.28834	-0.019761	-9.3571E-05	NaN	56.721	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276460			52380	5482	36514	36571							-0.03449146099410427
MSNKRSNSF	9	Unmodified	_MSNKRSNSF_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.756015	1069.49748	-0.69193	-0.00037071	-3.8053	-0.0020387	-4.4972	-0.0024094	535.753959496219	67.093	0.58096	67.117	66.769	67.35	0.023911	0.045068	-0.00032956	NaN	56.721	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235230			52381	5482	36514	36571							-0.03449146099410427
MSNQEIKDK	9	Unmodified	_MSNQEIKDK_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7725830078125	2	546.771331	1091.52811	-0.045758	-2.5019E-05	0.63266	0.00034592	0.5869	0.0003209	546.771476944906	81.142	0.90481	80.904	80.608	81.513	-0.23783					57	21	5	0	0	0	0.48817	1	9755	9755		60.118	3.486	1	1638400			52382	1096	36515	36572	57684	57684					-0.013994125050203365
MSNQVPRSV	9	Unmodified	_MSNQVPRSV_					0	0	0		nc|ENSG00000149305|O95264-2|HTR3B;ENSG00000149305|ENST00000260191|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2923278808594	2	509.260933	1016.50731	-0.096167	-4.8974E-05	1.2328	0.00062784	1.1367	0.00057887	509.7635368115954	53.285	0.91718	53.158	52.753	53.67	-0.12705					30	24	2	0	0	0	0.024319	1	5545	5545		24.519	0	1	251240			52383	6081	36516	36573	57685	57685					-0.00027958094017321855
MSNSKPRH	8	Unmodified	_MSNSKPRH_					0	0	0			REV__ENSG00000130119|ENST00000360845|GNL3L	REV__ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.75250244140625	2	478.740168	955.465783	0.2658	0.00012725	0.71496	0.00034228	0.98076	0.00046953	478.7405136758239	33.952	0.5294	33.952	33.521	34.05	0					17	13	2	0	0	0	0.027866	1	2447	2447		44.117	19.914	1	131410	+		52384	23082	36517	36574	57686	57686					-0.013730940626942356
MSNVDFIDV	9	Unmodified	_MSNVDFIDV_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2410888671875	2	520.241875	1038.4692	0.041792	2.1742E-05	-0.43698	-0.00022734	-0.39519	-0.00020559	520.2415984909967	75.758	1.4626	75.77	75.436	76.898	0.011642					119	37	4	0	0	0	0.15388	1	9288	9288		98.582	10.886	1	19533000	+		52385	36740	36518	36575	57687	57687					-0.048498887993673634
MSPEGTLVIQ	10	Unmodified	_MSPEGTLVIQ_					0	0	0		nc|ENSG00000071991|Q9H159-2|CDH19;ENSG00000071991|ENST00000262150|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	MSMS	OPSCC_39_ClassI_Rep-3	3	537.78076171875	2	537.778625	1073.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.447	1	35.491	34.991	35.991	0.04406								0	0	0	0.16915	1	2675	2675		98.629	4.2202	1				52386	1462	36519	36576	57688	57688					0.008866596431289508
MSPLAGLRL	9	Unmodified	_MSPLAGLRL_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2803649902344	2	479.281137	956.547722	-0.48842	-0.00023409	-4.2481	-0.002036	-4.7365	-0.0022701	479.2796754108199	81.053	2.622	80.922	79.525	82.147	-0.13075					131	63	4	0	0	0	0.23085	1	10116	10116		84.916	8.1414	1	1507900	+		52387	36838	36520	36577	57689	57689					0.0677100829640267
MSPRRRLF	8	Unmodified	_MSPRRRLF_					0	0	0			REV__nc|ENSG00000196504|O75400-3|PRPF40A	REV__nc|ENSG00000196504|O75400-3|PRPF40A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3224487304688	2	531.803103	1061.59165	-0.51852	-0.00027575	-3.2541	-0.0017306	-3.7727	-0.0020063	532.3032832721574	67.473	0.56047	67.185	66.992	67.552	-0.28835					16	13	2	0	0	0	0.027866	1	8061	8061		38.806	23.941	1	106140	+		52388	28190	36521	36578	57690	57690					0.06332037513379873
MSPRRRLF	8	Unmodified	_MSPRRRLF_					0	0	0			REV__nc|ENSG00000196504|O75400-3|PRPF40A	REV__nc|ENSG00000196504|O75400-3|PRPF40A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.803103	1061.59165	0.58586	0.00031156	-1.9634	-0.0010441	-1.3775	-0.00073258	531.8014793422817	67.706	0.58604	67.451	67.194	67.78	-0.25516	0.065121	-0.00055108	NaN	38.806	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263770	+		52389	28190	36521	36578							0.06332037513379873
MSPRRRLF	8	Unmodified	_MSPRRRLF_					0	0	0			REV__nc|ENSG00000196504|O75400-3|PRPF40A	REV__nc|ENSG00000196504|O75400-3|PRPF40A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.803103	1061.59165	-0.43768	-0.00023276	-0.84297	-0.00044829	-1.2806	-0.00068105	531.8022556863364	67.683	0.78392	67.45	67.217	68.001	-0.23376	0.063711	0.00064062	NaN	38.806	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279260	+		52390	28190	36521	36578							0.06332037513379873
MSPRRRLF	8	Unmodified	_MSPRRRLF_					0	0	0			REV__nc|ENSG00000196504|O75400-3|PRPF40A	REV__nc|ENSG00000196504|O75400-3|PRPF40A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.803103	1061.59165	-0.25845	-0.00013745	1.5093	0.00080267	1.2509	0.00066523	531.8020078157987	67.696	0.62783	67.458	67.159	67.787	-0.23814	0.072289	0.0031426	NaN	38.806	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244880	+		52391	28190	36521	36578							0.06332037513379873
MSPRTRGAQA	10	Unmodified	_MSPRTRGAQA_					0	0	0		ENST00000324849.8_1_8:17104528-17104615:+|nuORF	ENST00000324849.8_1_8:17104528-17104615:+|nuORF	ENST00000324849.8_1_8:17104528-17104615:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.780517578125	2	537.777282	1073.54001	-1.2456	-0.00066985	2.0808	0.001119	0.83521	0.00044916	537.7808889503812	35.517	0.99532	35.517	35.2	36.195	0					58	26	3	0	0	0	0.19121	3	2747	2736;2747;2761		122.18	10.926	1	11431000			52392	12261	36522	36579	57691;57692;57693	57692					0.006182490288438203
MSPRTRGAQA	10	Unmodified	_MSPRTRGAQA_					0	0	0		ENST00000324849.8_1_8:17104528-17104615:+|nuORF	ENST00000324849.8_1_8:17104528-17104615:+|nuORF	ENST00000324849.8_1_8:17104528-17104615:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7803955078125	2	537.777282	1073.54001	-1.522	-0.00081848	2.9132	0.0015666	1.3912	0.00074815	537.7810820676212	35.348	1.04	35.326	35.013	36.053	-0.021763					59	27	3	0	0	0	0.31896	2	2707	2686;2707		107.01	8.3781	1	10690000			52393	12261	36522	36579	57694;57695	57695					0.006182490288438203
MSQMPEEGRR	10	Unmodified	_MSQMPEEGRR_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	611.3544311523438	2	610.779164	1219.54378	-0.40938	-0.00025004	-1.234	-0.00075373	-1.6434	-0.0010038	610.7786816131776	92.406	0.28175	92.284	92.182	92.464	-0.12242					9	6	2	0	0	0	0.03519	1	11369	11369		42.864	15.817	1	41737			52394	3717	36523	36580	57696	57696					-0.05721449259635847
MSQPTPCPE	9	Unmodified	_MSQPTPCPE_					0	0	0		ENST00000416263.3_1_17:48944383-48945006:+|nuORF	ENST00000416263.3_1_17:48944383-48945006:+|nuORF	ENST00000416263.3_1_17:48944383-48945006:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7503662109375	2	495.206978	988.399403	-0.12988	-6.4315E-05	0.15526	7.6886E-05	0.025385	1.2571E-05	495.2068906361709	45.265	1.263	45.265	44.485	45.748	0					92	36	3	0	0	0	0.023473	1	4456	4456		85.161	59.097	1	1044900			52395	13895	36524	36581	57697	57697					-0.0952609073962094
MSQTLPTSNY	10	Unmodified	_MSQTLPTSNY_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant;KDM3B|p.K592Cfs*18|1|0.2|ENSG00000120733|chr5:138391405-138391408|GAAA/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2356567382812	2	571.263339	1140.51212	-0.58816	-0.00033599	-3.0445	-0.0017392	-3.6326	-0.0020752	571.2616323908163	69.391	0.58135	69.124	68.87	69.451	-0.26725					28	13	3	0	0	0	0.03519	1	8062	8062		53.089	0	1	311970			52396	3837	36525	36582	57698	57698					-0.052511187419213456
MSQTSILQN	9	Unmodified	_MSQTSILQN_					0	0	0		nc|ENSG00000102445|Q9H714-1|RUBCNL;ENST00000441284.5_2_13:46935667-46935700:-|nuORF	nc|ENSG00000102445|Q9H714-1|RUBCNL	nc|ENSG00000102445|Q9H714-1|RUBCNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.8341369628906	2	511.252774	1020.491	-0.082159	-4.2004E-05	0.80927	0.00041374	0.72711	0.00037174	511.2528632907834	72.89	0.52927	72.899	72.652	73.181	0.0096512					24	12	3	0	0	0	0.024405	1	8775	8775		27.882	0	1	262110			52397	18135	36526	36583	57699	57699					-0.01843084050778998
MSRESLQLF	9	Unmodified	_MSRESLQLF_					0	0	0			REV__ENSG00000153820|ENST00000392056|SPHKAP	REV__ENSG00000153820|ENST00000392056|SPHKAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7840576171875	2	555.784241	1109.55393	0.3871	0.00021515	0.29162	0.00016208	0.67872	0.00037722	555.7842654447932	74.407	1.4932	74.225	73.889	75.382	-0.18279					65	35	3	0	0	0	0.2101	1	8796	8796		87.696	10.85	1	1775600	+		52398	24912	36527	36584	57700	57700					0.0035348173726106324
MSRFCEAEF	9	Unmodified	_MSRFCEAEF_					0	0	0		ENSG00000143369|ENST00000369047|ECM1;nc|ENSG00000143369|Q16610-4|ECM1	ENSG00000143369|ENST00000369047|ECM1	ENSG00000143369|ENST00000369047|ECM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2717895507812	2	560.233527	1118.4525	-0.14698	-8.2341E-05	-0.909	-0.00050925	-1.056	-0.00059159	560.232810146822	93.295	0.33555	93.295	93.093	93.429	0					13	7	2	0	0	0	0.023239	1	11858	11858		74.255	2.8771	1	66288			52399	5640	36528	36585	57701	57701					-0.10198712956957934
MSRLLPRR	8	Unmodified	_MSRLLPRR_					0	0	0			REV__ENSG00000174791|ENST00000311320|RIN1	REV__ENSG00000174791|ENST00000311320|RIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3043823242188	2	514.810928	1027.6073	0.24199	0.00012458	4.4603	0.0022962	4.7022	0.0024208	514.8140908600558	95.507	1.1907	95.51	94.914	96.104	0.0033798					48	27	4	0	0	0	0.027866	1	12202	12202		30.504	0	1	136780	+		52400	26892	36529	36586	57702	57702					0.0946032403044228
MSRMAFPVF	9	Unmodified	_MSRMAFPVF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|9	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|9	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2808227539062	2	543.267173	1084.51979	-0.98296	-0.00053401	-2.0894	-0.0011351	-3.0724	-0.0016691	543.2668654698939	62.398	0.58414	62.14	61.743	62.327	-0.25824					26	14	3	0	0	0	0.024405	1	7003	7003		35.618	0	1	334310			52401	426	36530	36587	57703	57703					-0.019086379553527877
MSRVALQKSAS	11	Unmodified	_MSRVALQKSAS_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.343017578125	2	589.321522	1176.62849	-0.69359	-0.00040875	1.9336	0.0011395	1.24	0.00073077	589.8262635853455	93.193	0.43849	93.071	92.884	93.322	-0.12215					10	9	2	0	0	0	0.024743	1	11463	11463		29.551	7.5909	1	83928			52402	6674	36531	36588	57704	57704					0.04724244548629031
MSSLRVTSGA	10	Unmodified	_MSSLRVTSGA_					0	0	0		ENST00000519476.6_1_8:38243898-38243994:+|nuORF	ENST00000519476.6_1_8:38243898-38243994:+|nuORF	ENST00000519476.6_1_8:38243898-38243994:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7590637207031	2	504.760766	1007.50698	0.89892	0.00045374	-4.3201	-0.0021806	-3.4212	-0.0017269	504.7583427924988	59.829	1.1354	59.829	59.52	60.656	0					65	30	4	0	0	0	0.6365	1	6863	6863		72.879	3.2516	1	3508800			52403	15952	36532	36589	57705	57705					0.0035262218613070218
MSSLRVTSGA	10	Unmodified	_MSSLRVTSGA_					0	0	0		ENST00000519476.6_1_8:38243898-38243994:+|nuORF	ENST00000519476.6_1_8:38243898-38243994:+|nuORF	ENST00000519476.6_1_8:38243898-38243994:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.758544921875	2	504.760766	1007.50698	-0.26177	-0.00013213	-3.1491	-0.0015895	-3.4108	-0.0017217	504.75897293316626	59.659	0.93624	59.745	59.426	60.362	0.085682					50	24	3	0	0	0	0.37509	1	6756	6756		101.25	13.556	1	3227700			52404	15952	36532	36589	57706	57706					0.0035262218613070218
MSSLRVTSGA	10	Unmodified	_MSSLRVTSGA_					0	0	0		ENST00000519476.6_1_8:38243898-38243994:+|nuORF	ENST00000519476.6_1_8:38243898-38243994:+|nuORF	ENST00000519476.6_1_8:38243898-38243994:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	504.760766	1007.50698	-0.33551	-0.00016935	-3.2237	-0.0016272	-3.5592	-0.0017965	504.75898913199535	60.018	1.3383	59.818	59.318	60.657	-0.20016	0.020978	0.00038123	NaN	101.25	77	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2666700			52405	15952	36532	36589							0.0035262218613070218
MSSNNAELL	9	Unmodified	_MSSNNAELL_					0	0	0			REV__ENST00000256689.9_1_12:46752001-46752085:-|nuORF	REV__ENST00000256689.9_1_12:46752001-46752085:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.77191162109375	2	489.731674	977.448796	-0.17394	-8.5182E-05	0.45854	0.00022456	0.2846	0.00013938	489.7317380655549	42.228	1.7392	42.096	41.077	42.816	-0.13219					73	49	2	0	0	0	0.024205	1	3949	3949		53.351	2.016	1	294120	+		52406	29557	36533	36590	57707	57707					-0.040830594591511726
MSSPTQRTY	9	Unmodified	_MSSPTQRTY_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7498779296875	2	535.750398	1069.48624	-0.19087	-0.00010226	0.24617	0.00013188	0.055296	2.9625E-05	535.7503835257363	32.125	1.0077	31.888	31.489	32.497	-0.23667					48	23	3	0	0	0	0.030064	2	2194	2185;2194		141.52	56.36	1	1686800			52407	6724	36534	36591	57708;57709	57709					-0.0457196819352248
MSSPTQRTY	9	Unmodified	_MSSPTQRTY_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7498779296875	2	535.750398	1069.48624	-0.16445	-8.8102E-05	0.3299	0.00017674	0.16545	8.8641E-05	535.7504063761385	32.142	1.144	31.95	31.432	32.576	-0.19261					65	26	4	0	0	0	0.056725	3	2194	2183;2194;2206		126.24	49.468	1	1494700			52408	6724	36534	36591	57710;57711;57712	57711					-0.0457196819352248
MSSPTQRTY	9	Unmodified	_MSSPTQRTY_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.75	2	535.750398	1069.48624	-0.88567	-0.0004745	1.2437	0.00066631	0.35803	0.00019181	535.7507297938845	32.096	0.95503	31.939	31.529	32.484	-0.15772					53	22	3	0	0	0	0.042502	2	2170	2161;2170		131.62	59.739	1	1711900			52409	6724	36534	36591	57713;57714	57714					-0.0457196819352248
MSSQDHSKN	9	Unmodified	_MSSQDHSKN_					0	0	0		ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2207641601562	2	517.222005	1032.42946	-1.1907	-0.00061585	-1.0162	-0.0005256	-2.2069	-0.0011415	517.2214001797753	36.291	1.0405	36.291	35.886	36.927	0					90	28	5	0	0	0	0.39228	1	2862	2862		66.429	6.311	1	6143400			52410	121	36535	36592	57715	57715					-0.08546015750061997
MSSQDHSKN	9	Unmodified	_MSSQDHSKN_					0	0	0		ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2207641601562	2	517.222005	1032.42946	-1.1555	-0.00059765	-1.1053	-0.00057171	-2.2608	-0.0011694	517.2213934370508	36.13	0.96109	36.087	35.688	36.649	-0.042454					88	26	5	0	0	0	0.53979	2	2848	2834;2848		56.721	5.5284	1	6764700			52411	121	36535	36592	57716;57717	57717					-0.08546015750061997
MSSQDHSKN	9	Unmodified	_MSSQDHSKN_					0	0	0		ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.22119140625	2	517.222005	1032.42946	-0.95938	-0.00049621	-1.0571	-0.00054676	-2.0165	-0.001043	517.2214098687866	35.978	1.315	36.016	35.569	36.884	0.038044					90	35	4	0	0	0	0.53979	1	2792	2792		56.721	5.3856	1	6049000			52412	121	36535	36592	57718	57718					-0.08546015750061997
MSSREIDV	8	Unmodified	_MSSREIDV_					0	0	0		ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	ENSG00000175707|ENST00000320567|KDF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.724853515625	2	468.726392	935.438231	0.17019	7.9774E-05	-3.8292	-0.0017948	-3.659	-0.0017151	468.72453380611705	46.994	0.8109	46.994	46.515	47.326	0					44	21	3	0	0	0	0.62178	1	4679	4679		74.255	5.4682	1	1839800			52413	8583	36536	36593	57719	57719					-0.03207042113604075
MSSTGRLFQ	9	Unmodified	_MSSTGRLFQ_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7877197265625	2	513.755484	1025.49641	-1.0103	-0.00051905	0.22963	0.00011797	-0.78067	-0.00040107	513.7555599774932	24.125	0.39493	24.078	23.869	24.264	-0.047148					21	8	4	0	0	0	0.024323	1	1010	1010		35.618	0	1	120260	+		52414	21986	36537	36594	57720	57720					-0.015313604683342419
MSTCAQRF	8	Unmodified	_MSTCAQRF_					0	0	0			REV__ENSG00000134817|ENST00000606794|APLNR	REV__ENSG00000134817|ENST00000606794|APLNR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7523193359375	2	472.209855	942.405157	0.23942	0.00011305	0.74378	0.00035122	0.9832	0.00046428	472.20985009661604	33.905	0.74609	33.905	33.662	34.408	0					28	18	2	0	0	0	0.027866	1	2511	2511		31.955	28.271	1	72543	+		52415	23485	36538	36595	57721	57721					-0.06834947437300798
MSTLLMINPS	10	Unmodified	_MSTLLMINPS_					0	0	0		ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.7821044921875	2	553.782853	1105.55115	-0.3182	-0.00017621	-0.2693	-0.00014914	-0.5875	-0.00032535	553.7827692018195	82.714	1.3291	82.714	82.363	83.692	0					49	30	2	0	0	0	0.19121	2	10344	10331;10344		122.18	26.361	1	1396000			52416	12686	36539	36596	57722;57723	57723					0.0025989028808908188
MSTLLMINPS	10	Unmodified	_MSTLLMINPS_					0	0	0		ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.7825317382812	2	553.782853	1105.55115	1.3953	0.0007727	-2.0922	-0.0011586	-0.69691	-0.00038594	553.7817553776231	82.757	1.1115	82.647	82.379	83.491	-0.11006					40	25	2	0	0	0	0.50517	1	10307	10307		87.696	2.5356	1	1312100			52417	12686	36539	36596	57724	57724					0.0025989028808908188
MSTLLMINPS	10	Unmodified	_MSTLLMINPS_					0	0	0		ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7828979492188	2	553.782853	1105.55115	0.47986	0.00026574	-0.79927	-0.00044262	-0.31941	-0.00017688	553.7823921487068	82.764	2.2274	82.544	82.173	84.401	-0.22015					87	51	2	0	0	0	0.28861	3	9962	9950;9962;9974		110.12	10.875	1	4488900			52418	12686	36539	36596	57725;57726;57727	57726					0.0025989028808908188
MSTLLMINPS	10	Unmodified	_MSTLLMINPS_					0	0	0		ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7828979492188	2	553.782853	1105.55115	0.26248	0.00014536	-0.62666	-0.00034703	-0.36418	-0.00020168	553.782490316632	82.752	2.1822	82.571	82.201	84.383	-0.18079					95	50	2	0	0	0	0.48123	1	9981	9981		90.37	2.6155	1	5008800			52419	12686	36539	36596	57728	57728					0.0025989028808908188
MSTLLMINPS	10	Unmodified	_MSTLLMINPS_					0	0	0		ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	ENST00000357066.7_1_19:2071661-2071847:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7826538085938	2	553.782853	1105.55115	-0.48435	-0.00026822	0.042808	2.3707E-05	-0.44154	-0.00024452	553.7828515274422	82.77	2.061	82.63	82.26	84.321	-0.14014					91	47	2	0	0	0	0.37169	2	9972	9972;9997		101.6	13.846	1	5065800			52420	12686	36539	36596	57729;57730	57729					0.0025989028808908188
MSTLQWAVN	9	Unmodified	_MSTLQWAVN_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2579956054688	2	525.257859	1048.50117	-0.72492	-0.00038077	0.90237	0.00047397	0.17745	9.3205E-05	525.258155246414	63.253	1.1237	63.253	62.938	64.062	0					81	30	4	0	0	0	0.10174	2	7419	7383;7419		110.12	10.085	1	5653900			52421	722	36540	36597	57731;57732	57732					-0.02114476325573378
MSTLQWAVN	9	Unmodified	_MSTLQWAVN_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2581787109375	2	525.257859	1048.50117	-0.17452	-9.1669E-05	0.45563	0.00023932	0.28111	0.00014765	525.2579152756163	63.534	1.0572	63.282	62.893	63.95	-0.25141					95	28	5	0	0	0	0.057894	2	7399	7399;7424		125.81	24.561	1	5669900			52422	722	36540	36597	57733;57734	57733					-0.02114476325573378
MSTLQWAVN	9	Unmodified	_MSTLQWAVN_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2577514648438	2	525.257859	1048.50117	1.4352	0.00075388	-1.3796	-0.00072465	0.055636	2.9223E-05	525.2569811048166	63.267	1.3961	63.322	62.801	64.197	0.054104					99	37	5	0	0	0	0.48817	1	7305	7305		60.118	1.3363	1	5318600			52423	722	36540	36597	57735	57735					-0.02114476325573378
MSTNTVSCL	9	Oxidation (M)	_M(Oxidation (M))STNTVSCL_		M(1)STNTVSCL		M(48)STNTVSCL	0	0	1			REV__nc|ENSG00000145113|Q99102-17|MUC4	REV__nc|ENSG00000145113|Q99102-17|MUC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2155456542969	2	486.21226	970.409968	0.28893	0.00014048	4.017	0.0019531	4.3059	0.0020936	486.2144773560208	97.787	3.7885	97.785	95.99	99.778	-0.0020752					163	87	3	0	0	0	0.67687	1	12408	12408		47.657	6.8792	1	279470	+		52424	36751	36541	36598	57736	57736		974			-0.07642108085178734
MSTQSLTGVF	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))STQSLTGVF_		M(1)STQSLTGVF		M(57)STQSLTGVF	1	0	1		ENST00000439070.1_1_7:116056571-116057201:-|nuORF	ENST00000439070.1_1_7:116056571-116057201:-|nuORF	ENST00000439070.1_1_7:116056571-116057201:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.7646484375	2	564.765714	1127.51688	-0.36088	-0.00020381	-2.3771	-0.0013425	-2.7379	-0.0015463	564.7642830202146	76.749	0.59022	76.581	76.309	76.899	-0.16854					51	13	5	0	0	0	0.85955	1	9137	9137		56.721	7.2795	1	1736200			52425	14323	36542	36599	57737	57737		505			-0.04178234599157804
MSTVVTMPNA	10	Unmodified	_MSTVVTMPNA_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2846069335938	2	525.751553	1049.48855	-0.35682	-0.0001876	2.7181	0.001429	2.3612	0.0012414	525.7528083141888	55.477	0.56036	55.321	54.994	55.554	-0.15602					24	15	2	0	0	0	0.03519	1	6107	6107		37.812	11.119	1	284180			52426	10162	36543	36600	57738	57738					-0.0342125578008563
MSVDFRFF	8	Unmodified	_MSVDFRFF_					0	0	0			REV__ENST00000340437.8_1_11:61171089-61171380:-|nuORF	REV__ENST00000340437.8_1_11:61171089-61171380:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2767333984375	2	524.74967	1047.48479	-1.0528	-0.00055248	1.0926	0.00057333	0.039729	2.0848E-05	524.7500899048387	45.968	0.72961	45.816	45.48	46.209	-0.15156					45	20	3	0	0	0	0.027866	1	4526	4526		37.159	15.199	1	1853800	+		52427	30616	36544	36601	57739	57739					-0.03705557491639411
MSVGPLLYF	9	Unmodified	_MSVGPLLYF_					0	0	0			REV__ENSG00000129925|ENST00000431232|PGAP6	REV__ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.787841796875	2	513.770071	1025.52559	-0.27243	-0.00013997	0.4204	0.00021599	0.14797	7.6023E-05	513.7701159315739	24.148	0.40642	24.226	24.003	24.41	0.078344					13	8	2	0	0	0	0.024357	1	955	955		35.201	3.6709	1	31912	+		52428	23066	36545	36602	57740	57740					0.013847838279616553
MSVGPLLYF	9	Unmodified	_MSVGPLLYF_					0	0	0			REV__ENSG00000129925|ENST00000431232|PGAP6	REV__ENSG00000129925|ENST00000431232|PGAP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.770071	1025.52559	-1.0966	-0.00056341	0.35922	0.00018456	-0.73741	-0.00037886	513.7697844646275	24.299	0.22038	24.251	24.133	24.353	-0.047148	0.00062471	4.369E-05	NaN	35.201	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29641	+		52429	23066	36545	36602							0.013847838279616553
MSVLSSLFC	9	Unmodified	_MSVLSSLFC_					0	0	0			REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	REV__ENST00000512062.5_1_16:69496477-69496735:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	493.737914	985.461275	-0.31038	-0.00015325	1.9697	0.00097251	1.6593	0.00081927	493.74001108831493	41.838	0.21629	41.706	41.641	41.857	-0.1322					6	5	2	0	0	0	0.023417	1	3772	3772		79.451	10.664	1	35295	+		52430	34131	36546	36603	57741	57741					-0.03203739320474597
MSVRDTKEV	9	Unmodified	_MSVRDTKEV_					0	0	0		ENST00000430838.2_1_7:64291963-64292014:+|nuORF	ENST00000430838.2_1_7:64291963-64292014:+|nuORF	ENST00000430838.2_1_7:64291963-64292014:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.340087890625	2	532.773874	1063.53319	0.37624	0.00020045	-1.408	-0.00075016	-1.0318	-0.00054971	532.7733207669431	97.948	0.89421	97.946	97.456	98.351	-0.0020752					70	18	6	0	0	0	0.023837	1	12449	12449		37.812	2.1932	1	409220			52431	14178	36547	36604	57742	57742					0.003968913575818078
MSVSFCRY	8	Unmodified	_MSVSFCRY_					0	0	0			REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF	REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.71807861328125	2	496.720055	991.425558	-0.436	-0.00021657	-4.3249	-0.0021483	-4.7609	-0.0023648	496.71801832498005	28.13	1.4206	28.13	27.653	29.073	0					92	34	5	0	0	0	0.93274	1	1626	1626		47.916	0.25827	1	4488400	+		52432	20412	36548	36605	57743	57743					-0.07049776777489569
MSVSFCRY	8	Unmodified	_MSVSFCRY_					0	0	0			REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF	REV__ENST00000489406.1_1_22:19455337-19466647:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.7178955078125	2	496.720055	991.425558	-0.46865	-0.00023279	-4.0567	-0.002015	-4.5253	-0.0022478	496.71801296703865	27.746	1.2646	27.827	27.392	28.657	0.081291					79	31	5	0	0	0	0.87148	1	1488	1488		53.351	5.6941	1	4591900	+		52433	20412	36548	36605	57744	57744					-0.07049776777489569
MSVSSFAGR	9	Unmodified	_MSVSSFAGR_					0	0	0			REV__ENSG00000170477|ENST00000551956|KRT4	REV__ENSG00000170477|ENST00000551956|KRT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2618103027344	2	471.229102	940.443651	0.070479	3.3212E-05	-3.4222	-0.0016126	-3.3517	-0.0015794	471.22733783561296	33.738	0.79765	33.508	33.195	33.992	-0.22925					45	19	4	0	0	0	0.024447	1	2384	2384		40.778	9.2484	1	1473300	+	+	52434	19557	36549	36606	57745	57745					-0.02895318531113844
MSVYDPVTE	9	Unmodified	_MSVYDPVTE_					0	0	0			REV__sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	REV__sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7666015625	2	520.733883	1039.45321	-0.47915	-0.00024951	1.9811	0.0010316	1.5019	0.00078211	520.7356707203304	47.693	0.17913	47.596	47.451	47.63	-0.097553					5	4	2	0	0	0	0.018983	1	4684	4684		104.75	22.442	1	63591	+		52435	37566	36550	36607	57746	57746					-0.06493595036272382
MSYQSSWDT	9	Unmodified	_MSYQSSWDT_					0	0	0			REV__ENSG00000167615|ENST00000326764|LENG8	REV__ENSG00000167615|ENST00000326764|LENG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.2715454101562	2	552.718764	1103.42298	0.54138	0.00029923	-1.4935	-0.00082551	-0.95215	-0.00052627	552.717900352689	51.019	0.56834	50.838	50.534	51.102	-0.18071					26	14	2	0	0	0	0.024495	1	5191	5191		34.173	12.213	1	469210	+		52436	26165	36551	36608	57747	57747					-0.12459953701431914
MTAELQQDD	9	Unmodified	_MTAELQQDD_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;nc|ENSG00000048028|Q96RU2-3|USP28;ENST00000544750.1_1_11:113745568-113746238:-|nuORF;ENST00000540925.5_1_11:113745483-113746238:-|nuORF;ENST00000545540.5_1_11:113712484-113746280:-|nuORF	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7593383789062	2	525.724046	1049.43354	0.18459	9.7042E-05	-1.9771	-0.0010394	-1.7925	-0.00094236	525.7231191918186	57.135	0.28091	56.933	56.783	57.064	-0.20209					11	7	2	0	0	0	0.024466	1	6208	6208		39.253	0	1	84021			52437	1113	36552	36609	57748	57748					-0.08919971047021136
MTAIQLIQF	9	Unmodified	_MTAIQLIQF_					0	0	0		nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	nc|ENSG00000066322|Q9BW60-2|ELOVL1	nc|ENSG00000066322|Q9BW60-2|ELOVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7960815429688	2	532.794078	1063.5736	-0.78611	-0.00041883	3.7686	0.0020079	2.9825	0.001589	532.7960022946929	35.61	1.0392	35.654	35.305	36.344	0.04406					71	27	4	0	0	0	0.67308	1	2706	2706		47.916	0.25827	1	2638400			52438	1337	36553	36610	57749	57749					0.04435857748012495
MTAKLSALLV	10	Oxidation (M)	_M(Oxidation (M))TAKLSALLV_		M(1)TAKLSALLV		M(44)TAKLSALLV	0	0	1		ENSG00000169208|ENST00000641040|OR10G3	ENSG00000169208|ENST00000641040|OR10G3	ENSG00000169208|ENST00000641040|OR10G3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8167114257812	2	531.81501	1061.61547	-0.26415	-0.00014048	3.569	0.0018981	3.3049	0.0017576	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	1.0122	1	10905	10905		44.377	11.565	1	3741200			52439	7913	36554	36611	57750	57750		325			0.08712413436524002
MTALPGPLW	9	Unmodified	_MTALPGPLW_					0	0	0		nc|ENSG00000116985|P34820-2|BMP8B;ENSG00000116985|ENST00000372827|BMP8B	nc|ENSG00000116985|P34820-2|BMP8B	nc|ENSG00000116985|P34820-2|BMP8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2627258300781	2	493.262413	984.510274	-0.19328	-9.5338E-05	2.8829	0.001422	2.6896	0.0013267	493.2637914449025	71.458	1.1665	71.182	70.743	71.91	-0.2751					54	27	3	0	0	0	0.64155	1	8350	8350		50.025	0	1	1762400			52440	3599	36555	36612	57751	57751					0.017399170307839995
MTALVLTPV	9	Unmodified	_MTALVLTPV_					0	0	0		ENST00000502350.5_1_4:8234964-8242679:+|nuORF;ENST00000513495.5_1_4:8233802-8237300:+|nuORF;ENST00000506360.5_1_4:8234964-8238388:+|nuORF	ENST00000502350.5_1_4:8234964-8242679:+|nuORF	ENST00000502350.5_1_4:8234964-8242679:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7768859863281	2	472.777896	943.54124	-0.34485	-0.00016304	-2.8279	-0.001337	-3.1727	-0.0015	472.7763802643566	79.401	2.2977	79.229	78.195	80.493	-0.17226					108	54	3	0	0	0	0.59099	1	9814	9814		53.351	2.016	1	1264700			52441	15665	36556	36613	57752	57752					0.06721070345020053
MTATTEVADD	10	Unmodified	_MTATTEVADD_					0	0	0		nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;DMTF1|p.N330Kfs*8|1|0.11|ENSG00000135164|chr7:87184566-87184567|TT/-|frameshift_variant;nc|ENSG00000135164|Q9Y222-2|DMTF1;nc|ENSG00000135164|Q9Y222-3|DMTF1;nc|ENSG00000135164|Q9Y222-4|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1;nc|ENSG00000135164|Q9Y222-4|DMTF1	nc|ENSG00000135164|Q9Y222-5|DMTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3460693359375	2	527.223879	1052.43321	-1.1885	-0.00062658	-1.7258	-0.00090987	-2.9142	-0.0015365	527.2227596636735	84.071	0.56424	83.998	83.657	84.221	-0.072769					21	12	2	0	0	0	0.03519	1	10495	10495		32.812	12.331	1	116390			52442	4867;18293	36557	36614	57753	57753					-0.09091390766866425
MTCASIAGLIP	11	Unmodified	_MTCASIAGLIP_					0	0	0		BRINP3|p.I513Ffs*25|1|0.16|ENSG00000162670|chr1:190098783-190098783|G/-|frameshift_variant	BRINP3|p.I513Ffs*25|1|0.16|ENSG00000162670|chr1:190098783-190098783|G/-|frameshift_variant	BRINP3|p.I513Ffs*25|1|0.16|ENSG00000162670|chr1:190098783-190098783|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7760620117188	2	538.77757	1075.54059	-1.2637	-0.00068087	-2.387	-0.0012861	-3.6507	-0.0019669	538.7762689677453	57.457	1.0107	57.224	56.691	57.702	-0.23363					48	26	3	0	0	0	0.6032	1	6269	6269		69.628	20.417	1	1868400			52443	191	36558	36615	57754	57754					0.005839076336542348
MTDGFQFEY	9	Oxidation (M)	_M(Oxidation (M))TDGFQFEY_		M(1)TDGFQFEY		M(80)TDGFQFEY	0	0	1		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2288208007812	2	577.228965	1152.44338	-0.17054	-9.8441E-05	0.41524	0.00023969	0.2447	0.00014125	577.2289668984179	73.612	1.0591	73.335	72.626	73.685	-0.2769					57	25	3	0	0	0	0.26966	1	8652	8652		79.713	26.361	1	1081800			52444	2935	36559	36616	57755	57755		109			-0.12674783041643423
MTDGFQFEY	9	Unmodified	_MTDGFQFEY_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2314453125	2	569.231507	1136.44846	0.11135	6.3382E-05	0.054458	3.0999E-05	0.1658	9.4381E-05	569.2313737718794	76.586	0.91885	76.318	75.968	76.887	-0.26806					69	21	5	0	0	0	0.013293	4	9081	9070;9081;9091;9103		176.09	76.712	1	3821000			52445	2935	36559	36617	57756;57757;57758;57759	57757					-0.11430479179011854
MTDGFQFEY	9	Unmodified	_MTDGFQFEY_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2315063476562	2	569.231507	1136.44846	0.247	0.0001406	-0.19973	-0.00011369	0.047267	2.6906E-05	569.2312497963704	76.549	0.99852	76.297	75.944	76.943	-0.25162					63	23	4	0	0	0	0.016542	4	9102	9080;9092;9102;9115		154.12	74.667	1	3960500			52446	2935	36559	36617	57760;57761;57762;57763	57762					-0.11430479179011854
MTDGFQFEY	9	Unmodified	_MTDGFQFEY_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2317504882812	2	569.231507	1136.44846	-0.039417	-2.2437E-05	0.064006	3.6434E-05	0.024589	1.3997E-05	569.2313433294163	76.372	1.0459	76.203	75.853	76.899	-0.16853					69	24	5	0	0	0	0.020687	4	9062	9039;9051;9062;9075		148.99	58.21	1	3840200			52447	2935	36559	36617	57764;57765;57766;57767	57766					-0.11430479179011854
MTDIKNDSY	9	Unmodified	_MTDIKNDSY_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2677612304688	2	543.742239	1085.46993	0.96819	0.00052644	-1.2515	-0.00068047	-0.28327	-0.00015402	543.7413095713509	36.463	0.5201	36.265	36.016	36.536	-0.19829					18	12	2	0	0	0	0.023635	1	2856	2856		56.721	12.604	1	241960			52448	5161	36560	36618	57768	57768					-0.06939094150311576
MTDLFRMR	8	Unmodified	_MTDLFRMR_					0	0	0			REV__ENSG00000140521|ENST00000268124|POLG	REV__ENSG00000140521|ENST00000268124|POLG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8472900390625	2	535.267704	1068.52086	-0.61686	-0.00033018	0.17987	9.6276E-05	-0.43699	-0.00023391	535.2670148969205	48.974	3.4282	48.974	47.181	50.609	0					215	99	3	0	0	0	0.027866	1	4733	4733		16.473	5.6076	1	2488400	+		52449	24025	36561	36619	57769	57769					-0.010664235864396687
MTDLKQRR	8	Unmodified	_MTDLKQRR_					0	0	0			REV__MRM1|p.T208Ifs*53|1|0.08|ENSG00000278619|chr17:36602630-36602631|-/TATC|frameshift_variant	REV__MRM1|p.T208Ifs*53|1|0.08|ENSG00000278619|chr17:36602630-36602631|-/TATC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3038330078125	2	524.290025	1046.5655	-0.75122	-0.00039386	3.8679	0.0020279	3.1167	0.001634	524.2918138957812	89.085	0.53802	88.923	88.554	89.092	-0.1626					17	12	2	0	0	0	0.027866	1	10819	10819		34.173	3.6689	1	110280	+		52450	29219	36562	36620	57770	57770					0.04407723551230447
MTDLLIPY	8	Unmodified	_MTDLLIPY_					0	0	0			REV__ENST00000336812.4_1_4:24577978-24578059:-|nuORF	REV__ENST00000336812.4_1_4:24577978-24578059:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2700500488281	2	483.254254	964.493955	-0.37506	-0.00018125	-2.6119	-0.0012622	-2.9869	-0.0014434	483.2534582265414	83.125	0.43026	83.125	82.878	83.309	0					13	9	2	0	0	0	0.027866	1	10365	10365		90.939	22.152	1	98161	+		52451	30553	36563	36621	57771	57771					0.010287910740203188
MTDLNIGIL	9	Unmodified	_MTDLNIGIL_					0	0	0		ENST00000251527.9_1_7:158525686-158525794:-|nuORF	ENST00000251527.9_1_7:158525686-158525794:-|nuORF	ENST00000251527.9_1_7:158525686-158525794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2947692871094	2	495.270435	988.526318	0.1386	6.8646E-05	-3.2676	-0.0016184	-3.129	-0.0015497	495.26872927224485	53.32	0.64345	53.32	53.011	53.655	0					28	17	2	0	0	0	0.024205	1	5738	5738		53.351	21.822	1	648600			52452	11353	36564	36622	57772	57772					0.03159578477038849
MTDPKLITW	9	Unmodified	_MTDPKLITW_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13396982-13397291:-|nuORF;ENST00000429271.1_1_21:28515665-28516046:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.79345703125	2	552.791535	1103.56852	-0.28396	-0.00015697	-0.53227	-0.00029423	-0.81623	-0.00045121	552.7915669250647	66.148	0.83863	65.906	65.5	66.338	-0.24145					68	20	4	0	0	0	0.094442	2	7594	7594;7606		112.41	42.783	1	1204100			52453	10711	36565	36623	57773;57774	57773					0.020875538853943
MTDPKLITW	9	Unmodified	_MTDPKLITW_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13396982-13397291:-|nuORF;ENST00000429271.1_1_21:28515665-28516046:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.793212890625	2	552.791535	1103.56852	-0.69395	-0.00038361	-0.078818	-4.357E-05	-0.77277	-0.00042718	552.7917330527833	66.133	0.90826	65.92	65.505	66.414	-0.21327					77	22	5	0	0	0	0.11727	2	7591	7591;7604		106.68	39.189	1	1380700			52454	10711	36565	36623	57775;57776	57775					0.020875538853943
MTDPKLITW	9	Unmodified	_MTDPKLITW_					0	0	0		ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13396982-13397291:-|nuORF;ENST00000429271.1_1_21:28515665-28516046:-|nuORF	ENSG00000233276|ENST00000419783|GPX1	ENSG00000233276|ENST00000419783|GPX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.7940063476562	2	552.791535	1103.56852	-0.53471	-0.00029559	-0.3797	-0.0002099	-0.91442	-0.00050548	552.7916605524867	66.155	0.78857	65.904	65.52	66.309	-0.25111					70	19	5	0	0	0	0.16638	1	7584	7584		95.815	16.103	1	1262900			52455	10711	36565	36623	57777	57777					0.020875538853943
MTDQNWCSR	9	Unmodified	_MTDQNWCSR_					0	0	0			REV__SF1|p.R21C|1|0.11|ENSG00000168066|chr11:64776597-64776597|G/A|missense_variant	REV__SF1|p.R21C|1|0.11|ENSG00000168066|chr11:64776597-64776597|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2723999023438	2	570.731683	1139.44881	0.14619	8.3434E-05	3.6401	0.0020775	3.7863	0.002161	570.7336276902554	49.851	0.37053	49.571	49.359	49.729	-0.27977					17	9	2	0	0	0	0.024409	1	5028	5028		33.922	4.3709	1	188040	+		52456	37481	36566	36624	57778	57778					-0.1153338273081772
MTDRDWRIF	9	Unmodified	_MTDRDWRIF_					0	0	0		ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.8905029296875	3	413.869485	1238.58663	0.27526	0.00011392	2.9503	0.0012211	3.2256	0.001335	413.8708329179285	21.408	0.47976	21.23	20.918	21.397	-0.17721					25	9	4	0	0	0	0.0245	1	638	638		36.447	22.939	1	32955			52457	8456	36567	36625	57779	57779					-0.023123111398945184
MTDRDWRIF	9	Unmodified	_MTDRDWRIF_					0	0	0		ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	413.869485	1238.58663	-0.106	-4.3871E-05	5.7478	0.0023789	5.6418	0.002335	413.87183667272853	21.072	0.39365	21.072	20.9	21.293	0	-0.12853	0.0016291	NaN	36.447	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18076			52458	8456	36567	36625							-0.023123111398945184
MTDRDWRIF	9	Unmodified	_MTDRDWRIF_					0	0	0		ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	413.869485	1238.58663	0.010766	4.4557E-06	5.0518	0.0020908	5.0626	0.0020952	413.8717313527759	21.174	0.2945	21.084	20.961	21.255	-0.090092	-0.1165	0.00076494	NaN	36.447	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20202			52459	8456	36567	36625							-0.023123111398945184
MTEAALLLL	9	Oxidation (M)	_M(Oxidation (M))TEAALLLL_		M(1)TEAALLLL		M(89)TEAALLLL	0	0	1		ENSG00000163286|ENST00000295453|ALPG	ENSG00000163286|ENST00000295453|ALPG	ENSG00000163286|ENST00000295453|ALPG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7808837890625	2	495.780636	989.546719	0.17533	8.6923E-05	-0.51402	-0.00025484	-0.33869	-0.00016792	495.7801236667535	90.497	2.8053	90.359	89.488	92.293	-0.13824					136	66	4	0	0	0	0.20304	1	11062	11062		88.643	25.337	1	1209800			52460	7056	36568	36626	57780	57780		296			0.051527491368574374
MTEAARVMM	9	Oxidation (M)	_MTEAARVM(Oxidation (M))M_		MTEAARVM(0.777)M(0.223)		M(-58)TEAARVM(5.4)M(-5.4)	0	0	1			REV__ENST00000535372.1_1_6:160182524-160183172:-|nuORF	REV__ENST00000535372.1_1_6:160182524-160183172:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2392578125	2	528.237755	1054.46096	-0.16877	-8.9152E-05	3.0968	0.0016359	2.9281	0.0015467	528.2392665310336	67.922	3.5687	67.634	66.474	70.042	-0.28834					255	91	4	0	0	0	0.42604	1	8149	8149		64.207	7.4862	3	4931700	+		52461	34668	36569	36627	57781	57781		939			-0.06409482311983083
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.242919921875	2	557.242072	1112.46959	-0.64025	-0.00035678	1.0061	0.00056065	0.36586	0.00020387	557.2424643053608	53.512	0.80201	53.375	53.095	53.897	-0.13617					67	23	4	0	0	0	0.067814	4	5633	5599;5610;5621;5633		122.18	42.725	1	8135900			52462	6741	36570	36628	57782;57783;57784;57785	57785					-0.08214513870143492
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.242919921875	2	557.242072	1112.46959	-0.17272	-9.6245E-05	0.37619	0.00020963	0.20348	0.00011339	557.2421022969844	53.732	1.0683	53.487	53.163	54.231	-0.2453					74	32	4	0	0	0	0.082191	3	5646	5622;5635;5646		116.9	40.057	1	7725400			52463	6741	36570	36628	57786;57787;57788	57788					-0.08214513870143492
MTEEEQIAY	9	Unmodified	_MTEEEQIAY_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.2427368164062	2	557.242072	1112.46959	-0.43596	-0.00024293	0.74337	0.00041424	0.30741	0.0001713	557.24220798362	53.638	0.67213	53.441	53.126	53.798	-0.19739					74	19	5	0	0	0	0.077175	4	5604	5604;5615;5627;5640		118.74	47.447	1	7441800			52464	6741	36570	36628	57789;57790;57791;57792	57789					-0.08214513870143492
MTEEEQIAY	9	Oxidation (M)	_M(Oxidation (M))TEEEQIAY_		M(1)TEEEQIAY		M(96)TEEEQIAY	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.2390747070312	2	565.239529	1128.46451	-0.22256	-0.0001258	-0.23346	-0.00013196	-0.45602	-0.00025776	565.2392541419129	49.25	0.93491	48.971	48.575	49.51	-0.27977					57	24	4	0	0	0	0.16468	1	4919	4919		96.19	34.083	1	2042500			52465	6741	36570	36629	57793	57793		280			-0.0945881773277506
MTEEEQIAY	9	Oxidation (M)	_M(Oxidation (M))TEEEQIAY_		M(1)TEEEQIAY		M(69)TEEEQIAY	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF;ENST00000470396.1_1_1:151238797-151239150:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.2390747070312	2	565.239529	1128.46451	-0.26552	-0.00015008	-0.19136	-0.00010816	-0.45688	-0.00025825	565.2392116105184	49.062	0.82375	48.88	48.558	49.382	-0.18206					45	21	3	0	0	0	0.35646	1	4902	4902		68.787	24.67	1	1993700			52466	6741	36570	36629	57794	57794		280			-0.0945881773277506
MTEELPGLRQT	11	Unmodified	_MTEELPGLRQT_					0	0	0		ENST00000571759.1_1_16:70722032-70722173:-|nuORF	ENST00000571759.1_1_16:70722032-70722173:-|nuORF	ENST00000571759.1_1_16:70722032-70722173:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.7657165527344	3	425.551822	1273.63364	1.0262	0.00043671	-0.060796	-2.5872E-05	0.96543	0.00041084	425.5515833831314	71.199	1.0077	70.993	70.528	71.536	-0.20613					32	15	3	0	0	0	0.024759	1	8365	8365		8.7993	0	1	416440			52467	17047	36571	36630	57795	57795					0.007765036205682918
MTEKLCIDE	9	Unmodified	_MTEKLCIDE_					0	0	0			REV__CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant	REV__CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.76416015625	2	541.248843	1080.48313	-0.54748	-0.00029632	-1.4298	-0.00077386	-1.9772	-0.0010702	541.2493143152432	49.718	0.4859	49.566	49.368	49.854	-0.1512					15	12	2	0	0	0	0.02435	1	5141	5141		51.335	8.9393	1	100930	+		52468	19242	36572	36631	57796	57796					-0.05388979362601276
MTERQALSY	9	Unmodified	_MTERQALSY_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.7662353515625	2	549.766049	1097.51754	-0.2345	-0.00012892	0.056075	3.0828E-05	-0.17842	-9.8091E-05	549.7659105123483	41.962	0.81577	41.839	41.565	42.38	-0.12299					49	21	3	0	0	0	0.14087	1	3770	3770		101.46	39.352	1	2036800			52469	6823	36573	36632	57797	57797					-0.02731395159457861
MTERQALSY	9	Unmodified	_MTERQALSY_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.766049	1097.51754	-0.51028	-0.00028053	0.35961	0.0001977	-0.15067	-8.2834E-05	549.7661101212134	42.173	0.76212	41.941	41.695	42.457	-0.23186	0.0063405	0.00026329	NaN	101.46	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2260000			52470	6823	36573	36632							-0.02731395159457861
MTERQALSY	9	Unmodified	_MTERQALSY_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000480468.1_1_11:116728475-116732017:-|nuORF;nc|ENSG00000160584|Q9Y2K2-6|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.766049	1097.51754	-0.34312	-0.00018864	-0.048164	-2.6479E-05	-0.39129	-0.00021512	549.7658769821886	42.255	0.79351	42.024	41.761	42.555	-0.2303	0.089369	-0.00018507	NaN	101.46	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2146600			52471	6823	36573	36632							-0.02731395159457861
MTERWQMYC	9	Unmodified	_MTERWQMYC_					0	0	0			REV__ITPKC|p.R536C|1|0.21|ENSG00000086544|chr19:40733296-40733296|C/T|missense_variant	REV__ITPKC|p.R536C|1|0.21|ENSG00000086544|chr19:40733296-40733296|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.8391418457031	3	416.50505	1246.49332	-1.433	-0.00059686	-1.4008	-0.00058344	-2.8338	-0.0011803	416.83814823014643	28.61	0.6762	28.365	28.162	28.838	-0.24524					22	15	2	0	0	0	0.0245	1	1676	1676		11.636	0	1	47540	+		52472	36161	36574	36633	57798	57798					-0.12006694908973259
MTESHNQEM	9	Unmodified	_MTESHNQEM_					0	0	0			REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7869262695312	2	553.715698	1105.41684	-1.0324	-0.00057165	1.5362	0.00085063	0.50383	0.00027898	553.7163786168132	55.649	0.51059	55.433	55.234	55.745	-0.21551					31	13	3	0	0	0	0.024511	1	6017	6017		40.778	6.6056	1	589500	+		52473	19811	36575	36634	57799	57799					-0.1316479520462508
MTEYSIGHSE	10	Unmodified	_MTEYSIGHSE_					0	0	0			REV__ENSG00000091704|ENST00000011292|CPA1	REV__ENSG00000091704|ENST00000011292|CPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.3048706054688	2	577.245146	1152.47574	0.36511	0.00021076	3.7185	0.0021465	4.0836	0.0023572	577.2471929969145	96.251	0.58086	96.127	95.771	96.352	-0.12305					20	13	2	0	0	0	0.03519	1	11869	11869		32.812	10.853	1	73259	+		52474	20915	36576	36635	57800	57800					-0.09439995638626897
MTFLRHFL	8	Unmodified	_MTFLRHFL_					0	0	0		ENST00000479774.5_1_2:106775690-106776508:-|nuORF	ENST00000479774.5_1_2:106775690-106776508:-|nuORF	ENST00000479774.5_1_2:106775690-106776508:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7901000976562	2	532.78913	1063.56371	0.99	0.00052746	0.17181	9.1537E-05	1.1618	0.000619	532.7892468952358	63.983	1.2106	64.029	63.688	64.899	0.045498					127	32	6	0	0	0	0.80469	1	7494	7494		58.782	5.8453	1	67508000			52475	15181	36577	36636	57801	57801					0.034467145332882865
MTFLRHFL	8	Unmodified	_MTFLRHFL_					0	0	0		ENST00000479774.5_1_2:106775690-106776508:-|nuORF	ENST00000479774.5_1_2:106775690-106776508:-|nuORF	ENST00000479774.5_1_2:106775690-106776508:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.7899169921875	2	532.78913	1063.56371	-0.4505	-0.00024002	2.6573	0.0014158	2.2068	0.0011758	532.7901370978082	64.285	0.71244	64.093	63.798	64.51	-0.19244					52	17	4	0	0	0	0.50239	1	7309	7309		85.359	2.609	1	3194700			52476	15181	36577	36636	57802	57802					0.034467145332882865
MTFMKQIA	8	Oxidation (M)	_M(Oxidation (M))TFMKQIA_		M(1)TFMKQIA		M(46)TFM(-46)KQIA	0	0	1		ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000481797.5_1_1:153719754-153719913:+|nuORF	ENSG00000143624|ENST00000318967|INTS3	ENSG00000143624|ENST00000318967|INTS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3294982910156	2	493.245906	984.477259	2.0214	0.00099704	-1.3657	-0.00067362	0.6557	0.00032342	493.244961690405	24.075	1.0507	23.894	23.411	24.461	-0.18089					47	23	3	0	0	0	0.027866	1	1036	1036		65.803	16.362	2	173760			52477	5674	36578	36637	57803	57803		242			-0.015600330835809473
MTFYGAAQE	9	Unmodified	_MTFYGAAQE_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2799987792969	2	509.220943	1016.42733	-0.026111	-1.3296E-05	0.64999	0.00033099	0.62388	0.00031769	509.2205386905731	48.27	0.14346	48.083	47.978	48.121	-0.18684					5	3	2	0	0	0	0.024539	1	4762	4762		35.618	26.796	1	65366	+		52478	23084	36579	36638	57804	57804					-0.08022444487892244
MTGCSFNLSV	10	Unmodified	_MTGCSFNLSV_					0	0	0			REV__ENSG00000179468|ENST00000350513|OR9A2	REV__ENSG00000179468|ENST00000350513|OR9A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7960205078125	2	529.735902	1057.45725	-0.30311	-0.00016057	1.4797	0.00078383	1.1765	0.00062326	529.736409345996	63.473	0.58732	63.222	62.893	63.48	-0.25141					21	15	2	0	0	0	0.03519	1	7362	7362		51.193	14.746	1	134280	+		52479	27270	36580	36639	57805	57805					-0.06917828814198401
MTGEITLRGL	10	Oxidation (M)	_M(Oxidation (M))TGEITLRGL_		M(1)TGEITLRGL		M(99)TGEITLRGL	0	0	1		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7969970703125	2	553.797349	1105.58014	0.022292	1.2345E-05	0.53319	0.00029528	0.55548	0.00030763	553.797488373303	80.604	2.2037	80.366	80.082	82.286	-0.23784					113	52	3	0	0	0	0.40067	1	9667	9667		98.629	18.69	1	2313500			52480	2444	36581	36640	57806	57806		94			0.03157750908735579
MTGRRPSPYWR	11	Unmodified	_MTGRRPSPYWR_					0	0	0		ENSG00000164363|ENST00000324642|SLC6A18	ENSG00000164363|ENST00000324642|SLC6A18	ENSG00000164363|ENST00000324642|SLC6A18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.724853515625	3	469.575184	1405.70372	0.76832	0.00036079	-4.2546	-0.0019978	-3.4862	-0.001637	469.57292797305706	47.346	0.50721	47.193	46.899	47.406	-0.153					22	13	2	0	0	0	0.024751	1	4679	4679		21.78	11.636	1	160200			52481	7270	36582	36641	57807	57807					0.017098467997129774
MTGTLKELA	9	Unmodified	_MTGTLKELA_					0	0	0			REV__ENST00000523988.5_1_13:45969527-45969839:-|nuORF	REV__ENST00000523988.5_1_13:45969527-45969839:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2611389160156	2	482.26261	962.510668	0.34821	0.00016793	-3.907	-0.0018842	-3.5588	-0.0017163	482.2606330741255	87.203	2.5776	87.168	86.65	89.227	-0.035362					149	61	4	0	0	0	0.2101	1	10937	10937		87.696	5.3914	1	2044800	+		52482	34367	36583	36642	57808	57808					0.02791291959965747
MTHALFPPD	9	Unmodified	_MTHALFPPD_					0	0	0		nc|ENSG00000180316|Q8N8W4-2|PNPLA1;nc|ENSG00000180316|Q8N8W4-3|PNPLA1;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1	nc|ENSG00000180316|Q8N8W4-2|PNPLA1	nc|ENSG00000180316|Q8N8W4-2|PNPLA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.79296875	2	514.747127	1027.4797	0.099212	5.1069E-05	-3.8938	-0.0020043	-3.7946	-0.0019533	514.7431785944497	71.665	1.0368	71.39	70.833	71.87	-0.27509					48	24	4	0	0	0	0.024323	1	8416	8416		53.351	7.3995	1	286180			52483	8971	36584	36643	57809	57809					-0.03293861354245564
MTHENMDVM	9	3 Oxidation (M)	_M(Oxidation (M))THENM(Oxidation (M))DVM(Oxidation (M))_		M(1)THENM(1)DVM(1)		M(69)THENM(69)DVM(69)	0	0	3			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.2099609375	2	578.209392	1154.40423	-0.92006	-0.00053199	1.5025	0.00086878	0.58248	0.0003368	578.2100567050392	55.779	0.85722	55.622	55.277	56.135	-0.15655					63	22	4	0	0	0	0.35646	1	6013	6013		68.787	15.85	1	2494300	+		52484	28441	36585	36644	57810	57810		839;840;841			-0.1667957465915606
MTHENMDVM	9	3 Oxidation (M)	_M(Oxidation (M))THENM(Oxidation (M))DVM(Oxidation (M))_		M(1)THENM(1)DVM(1)		M(69)THENM(69)DVM(69)	0	0	3			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.2101440429688	2	578.209392	1154.40423	-0.51307	-0.00029666	1.1495	0.00066464	0.63642	0.00036798	578.2098589393829	55.833	1.01	55.617	55.303	56.313	-0.21607					63	26	3	0	0	0	0.35646	1	6024	6024		68.787	10.976	1	2618900	+		52485	28441	36585	36644	57811	57811		839;840;841			-0.1667957465915606
MTHENMDVM	9	3 Oxidation (M)	_M(Oxidation (M))THENM(Oxidation (M))DVM(Oxidation (M))_		M(1)THENM(1)DVM(1)		M(91)THENM(91)DVM(91)	0	0	3			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.2092895507812	2	578.209392	1154.40423	-1.4988	-0.00086663	1.9169	0.0011083	0.41805	0.00024172	578.2102622110372	55.862	1.0487	55.646	55.268	56.317	-0.21551					71	27	4	0	0	0	0.18915	1	6012	6012		90.777	30.658	1	2187700	+		52486	28441	36585	36644	57812	57812		839;840;841			-0.1667957465915606
MTHENMDVM	9	3 Oxidation (M)	_M(Oxidation (M))THENM(Oxidation (M))DVM(Oxidation (M))_					0	0	3			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	578.209392	1154.40423	-0.92006	-0.00053199	1.5025	0.00086878	0.58248	0.0003368	578.2100567050392	55.779	0.85722	55.622	55.277	56.135	-0.15655	-0.0063718	-3.4562E-05	NaN	90.777	63	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2494300	+		52487	28441	36585	36644				839;840;841			-0.1667957465915606
MTHENMDVM	9	3 Oxidation (M)	_M(Oxidation (M))THENM(Oxidation (M))DVM(Oxidation (M))_					0	0	3			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	578.209392	1154.40423	-0.51307	-0.00029666	1.1495	0.00066464	0.63642	0.00036798	578.2098589393829	55.833	1.01	55.617	55.303	56.313	-0.21607	-0.011607	-0.00044284	NaN	90.777	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2618900	+		52488	28441	36585	36644				839;840;841			-0.1667957465915606
MTHENMDVM	9	3 Oxidation (M)	_M(Oxidation (M))THENM(Oxidation (M))DVM(Oxidation (M))_					0	0	3			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	578.209392	1154.40423	-1.4988	-0.00086663	1.9169	0.0011083	0.41805	0.00024172	578.2102622110372	55.862	1.0487	55.646	55.268	56.317	-0.21551	0.017979	0.00044457	NaN	90.777	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2187700	+		52489	28441	36585	36644				839;840;841			-0.1667957465915606
MTHFFFETP	9	Unmodified	_MTHFFFETP_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.8034057617188	2	578.760235	1155.50592	0.23265	0.00013465	2.8282	0.0016368	3.0608	0.0017715	578.7617592791578	58.844	0.75516	58.603	58.341	59.096	-0.24165					36	18	3	0	0	0	0.024436	1	6512	6512		23.042	0	1	1101900	+		52490	24627	36586	36645	57813	57813					-0.06561592182788445
MTHSWPTPL	9	Unmodified	_MTHSWPTPL_					0	0	0		nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2	nc|ENSG00000155966|P51816-5|AFF2	nc|ENSG00000155966|P51816-5|AFF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7295532226562	2	535.260402	1068.50625	-0.27042	-0.00014475	-1.3321	-0.00071301	-1.6025	-0.00085776	535.761197897318	59.574	0.71311	59.326	59.01	59.723	-0.24842					31	17	3	0	0	0	0.024436	1	6636	6636		23.042	1.0826	1	234910			52491	6502	36587	36646	57814	57814					-0.02526172462944487
MTIDQVKV	8	Unmodified	_MTIDQVKV_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.25592041015625	2	467.257328	932.500103	-0.206	-9.6256E-05	-3.375	-0.001577	-3.581	-0.0016733	467.2556601692759	76.552	1.5436	76.323	75.815	77.358	-0.22843					107	37	4	0	0	0	0.24001	3	9444	9371;9444;9455		133.81	25.725	1	3020000	+		52492	22450	36588	36647	57815;57816;57817	57816					0.031153093055422687
MTIICEDVY	9	Oxidation (M)	_M(Oxidation (M))TIICEDVY_		M(1)TIICEDVY		M(48)TIICEDVY	0	0	1		ENST00000220592.9_2_8:141540188-141540455:-|nuORF	ENST00000220592.9_2_8:141540188-141540455:-|nuORF	ENST00000220592.9_2_8:141540188-141540455:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.7477416992188	2	551.743393	1101.47223	-0.12178	-6.7193E-05	0.84462	0.00046601	0.72284	0.00039882	551.7437096673877	39.602	0.83638	39.376	39.059	39.896	-0.2257					60	21	4	0	0	0	0.67308	1	3358	3358		47.916	7.343	1	3532400			52493	11178	36589	36648	57818	57818		463			-0.07444381736854666
MTIQLFWA	8	Unmodified	_MTIQLFWA_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3046875	2	505.262413	1008.51027	0.62104	0.00031379	2.6847	0.0013565	3.3058	0.0016703	505.26370292954886	70.266	0.88013	69.973	69.238	70.118	-0.29291					41	22	3	0	0	0	0.027866	1	8377	8377		88.643	14.388	1	1301000	+		52494	23793	36590	36649	57819	57819					0.0063591703077463535
MTIRSWDN	8	Unmodified	_MTIRSWDN_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.26324462890625	2	511.739834	1021.46511	0.4412	0.00022578	0.89767	0.00045938	1.3389	0.00068516	511.7400863244596	83.736	0.72218	83.567	83.287	84.009	-0.16915					37	16	3	0	0	0	0.027866	1	10164	10164		35.618	13.658	1	400700	+		52495	25220	36591	36650	57820	57820					-0.04475933502408225
MTISRLVLE	9	Unmodified	_MTISRLVLE_					0	0	0		ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3018798828125	2	531.30481	1060.59507	-0.30953	-0.00016445	-2.9758	-0.0015811	-3.2854	-0.0017455	531.3029958804292	74.044	1.393	73.773	73.538	74.931	-0.27126					52	33	3	0	0	0	0.23085	1	9019	9019		84.916	2.675	1	2161800			52496	4626	36592	36651	57821	57821					0.0671924277673952
MTKEMVDVV	9	Oxidation (M)	_MTKEM(Oxidation (M))VDVV_		M(0.045)TKEM(0.955)VDVV		M(-13)TKEM(13)VDVV	0	0	1			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2586669921875	2	534.25921	1066.50387	-0.61151	-0.0003267	0.080555	4.3037E-05	-0.53095	-0.00028367	534.2591075338806	66.397	0.70659	66.116	65.75	66.456	-0.28149					46	21	4	0	0	0	0.26966	1	7889	7889		79.713	8.4169	2	8042700	+		52497	19711	36593	36652	57822	57822		609;610			-0.02672388982909979
MTKEMVDVV	9	Oxidation (M)	_M(Oxidation (M))TKEMVDVV_		M(0.98)TKEM(0.02)VDVV		M(17)TKEM(-17)VDVV	0	0	1			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2576904296875	2	534.25921	1066.50387	-0.61013	-0.00032597	0.022277	1.1902E-05	-0.58786	-0.00031407	534.2590063312184	66.058	0.63836	66.088	65.774	66.413	0.030106					46	18	5	0	0	0	0.39228	1	7804	7804		66.429	22.312	2	8007600	+		52498	19711	36593	36652	57823	57823		609;610			-0.02672388982909979
MTKEMVDVV	9	Oxidation (M)	_M(Oxidation (M))TKEMVDVV_		M(0.984)TKEM(0.016)VDVV		M(18)TKEM(-18)VDVV	0	0	1			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2600708007812	2	534.25921	1066.50387	-0.99451	-0.00053133	0.48065	0.00025679	-0.51387	-0.00027454	534.2596013368509	66.497	1.0065	66.273	65.577	66.584	-0.22374					63	26	5	0	0	0	0.29158	1	7608	7608		76.774	7.9873	2	6591700	+		52499	19711	36593	36652	57824	57824		609;610			-0.02672388982909979
MTKEMVDVV	9	Oxidation (M)	_MTKEM(Oxidation (M))VDVV_					0	0	1			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	534.25921	1066.50387	-0.61151	-0.0003267	0.080555	4.3037E-05	-0.53095	-0.00028367	534.2591075338806	66.397	0.70659	66.116	65.75	66.456	-0.28149	-0.051652	0.00011961	NaN	79.713	46	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8042700	+		52500	19711	36593	36652				609;610			-0.02672388982909979
MTKEMVDVV	9	Oxidation (M)	_MTKEM(Oxidation (M))VDVV_					0	0	1			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	534.25921	1066.50387	-0.61013	-0.00032597	0.022277	1.1902E-05	-0.58786	-0.00031407	534.2590063312184	66.058	0.63836	66.088	65.774	66.413	0.030106	-0.079196	5.7341E-05	NaN	79.713	46	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8007600	+		52501	19711	36593	36652				609;610			-0.02672388982909979
MTKIFVTLI	9	Unmodified	_MTKIFVTLI_					0	0	0			REV__ENST00000416109.2_1_12:7559136-7559247:-|nuORF	REV__ENST00000416109.2_1_12:7559136-7559247:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.3001098632812	2	533.322471	1064.63039	-0.70209	-0.00037444	-0.80465	-0.00042914	-1.5067	-0.00080358	533.3217260553373	60.933	0.44371	61.005	60.871	61.315	0.071125					21	11	3	0	0	0	0.024457	1	6975	6975		29.15	8.2026	1	279700	+		52502	32070	36594	36653	57825	57825					0.10065905304531952
MTKIPVIEN	9	Unmodified	_MTKIPVIEN_					0	0	0		nc|ENSG00000148053|Q16620-3|NTRK2;nc|ENSG00000148053|Q16620-5|NTRK2;nc|ENSG00000148053|Q16620-6|NTRK2;nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2	nc|ENSG00000148053|Q16620-3|NTRK2	nc|ENSG00000148053|Q16620-3|NTRK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7894287109375	2	522.791535	1043.56852	-1.0169	-0.00053165	-2.3099	-0.0012076	-3.3269	-0.0017393	522.7902280256903	84.225	1.0571	84.153	83.743	84.8	-0.072769					61	22	4	0	0	0	0.38419	1	10524	10524		66.962	0.53265	1	2774300			52503	6003	36595	36654	57826	57826					0.04847553885383604
MTKIQKHQE	9	Unmodified	_MTKIQKHQE_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;nc|ENSG00000130726|Q13263-2|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.8021850585938	2	571.802965	1141.59138	0.92389	0.00052828	-1.1278	-0.00064486	-0.20388	-0.00011658	571.8019871978865	97.42	1.1521	97.284	96.702	97.854	-0.1367					47	25	3	0	0	0	0.74711	1	12065	12065		42.864	0.46813	1	224250			52504	4447	36596	36655	57827	57827					0.026245730028676917
MTKNPNPKV	9	Unmodified	_MTKNPNPKV_					0	0	0			REV__ENSG00000198650|ENST00000355962|TAT	REV__ENSG00000198650|ENST00000355962|TAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8179321289062	2	514.781502	1027.54845	-2.1985	-0.0011317	-2.3479	-0.0012086	-4.5463	-0.0023404	514.7801045149893	60.532	0.78493	60.611	59.974	60.759	0.078888					37	20	3	0	0	0	0.024405	1	6820	6820		27.882	2.3082	1	574590	+		52505	28445	36597	36656	57828	57828					0.03577802945437725
MTKQLGDFW	9	Unmodified	_MTKQLGDFW_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.273193359375	2	563.273509	1124.53247	-0.35626	-0.00020067	-1.1794	-0.00066433	-1.5357	-0.000865	563.2727057033525	64.47	1.1122	64.236	63.655	64.768	-0.2345					71	27	4	0	0	0	0.030064	1	7325	7325		141.52	31.401	1	2163100			52506	9931	36598	36657	57829	57829					-0.024819032914592754
MTKQLGDFW	9	Unmodified	_MTKQLGDFW_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2741088867188	2	563.273509	1124.53247	-0.034601	-1.949E-05	-0.82738	-0.00046604	-0.86199	-0.00048553	563.2725235544544	64.427	1.2341	64.224	63.706	64.94	-0.20254					60	30	4	0	0	0	0.015512	3	7328	7315;7328;7339		159.28	49.156	1	1989100			52507	9931	36598	36657	57830;57831;57832	57831					-0.024819032914592754
MTKQLGDFW	9	Unmodified	_MTKQLGDFW_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2734375	2	563.273509	1124.53247	-0.59448	-0.00033485	-0.94933	-0.00053473	-1.5438	-0.00086959	563.2727300488199	64.505	0.90611	64.25	63.755	64.661	-0.25563					56	22	4	0	0	0	0.015512	2	7326	7315;7326		159.28	37.1	1	2303100			52508	9931	36598	36657	57833;57834	57834					-0.024819032914592754
MTKQLGDFW	9	Oxidation (M)	_M(Oxidation (M))TKQLGDFW_		M(1)TKQLGDFW		M(42)TKQLGDFW	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.8375854492188	2	571.270967	1140.52738	-0.060698	-3.4675E-05	-0.098818	-5.6452E-05	-0.15952	-9.1127E-05	571.2708663907648	61.983	0.82846	61.769	61.416	62.244	-0.21375					36	20	2	0	0	0	0.024427	1	6968	6968		42.396	15.6	1	471180			52509	9931	36598	36658	57835	57835		414			-0.03726207154090844
MTKQLGDFW	9	Oxidation (M)	_M(Oxidation (M))TKQLGDFW_		M(1)TKQLGDFW		M(48)TKQLGDFW	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.837646484375	2	571.270967	1140.52738	-0.72074	-0.00041174	0.44874	0.00025635	-0.272	-0.00015538	571.2712624649603	61.953	1.0564	61.775	61.287	62.343	-0.17782					47	26	2	0	0	0	0.024319	1	6954	6954		47.657	14.845	1	520360			52510	9931	36598	36658	57836	57836		414			-0.03726207154090844
MTKQLGDFW	9	Oxidation (M)	_M(Oxidation (M))TKQLGDFW_		M(1)TKQLGDFW		M(41)TKQLGDFW	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.8377685546875	2	571.270967	1140.52738	-0.098739	-5.6407E-05	0.080823	4.6172E-05	-0.017916	-1.0235E-05	571.2710079515019	62.096	0.82785	61.839	61.423	62.251	-0.25725					36	20	2	0	0	0	0.024374	1	6957	6957		40.778	13.731	1	498670			52511	9931	36598	36658	57837	57837		414			-0.03726207154090844
MTKVIKKKI	9	Unmodified	_MTKVIKKKI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8218994140625	2	544.864837	1087.71512	0.07175	3.9094E-05	2.5238	0.0013751	2.5956	0.0014142	544.8657190467652	63.511	0.18529	63.511	63.41	63.595	0					6	4	2	0	0	0	0.024541	1	7427	7427		10.866	0.6003	1	68800			52512	7771	36599	36659	57838	57838					0.1747727584115637
MTKWNQGIY	9	Unmodified	_MTKWNQGIY_					0	0	0			REV__ENST00000525654.1_1_11:50257866-50258052:+|nuORF	REV__ENST00000525654.1_1_11:50257866-50258052:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.731689453125	2	570.778959	1139.54336	-0.37497	-0.00021402	-1.0634	-0.00060697	-1.4384	-0.000821	570.7788215000471	72.861	0.58894	72.663	72.371	72.96	-0.19811					19	13	2	0	0	0	0.024427	1	8507	8507		34.173	0	1	225510	+		52513	34419	36600	36660	57839	57839					-0.02082500917163088
MTLAFKRK	8	Unmodified	_MTLAFKRK_					0	0	0			REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2718811035156	2	497.796955	993.579357	-0.2057	-0.0001024	1.9136	0.00095257	1.7079	0.00085017	497.7998981959434	52.925	0.72108	52.778	52.447	53.168	-0.14724					29	18	2	0	0	0	0.027866	1	5623	5623		31.955	20.444	1	264050	+		52514	22678	36601	36661	57840	57840					0.08231001050342002
MTLCSSLIE	9	Carbamidomethyl (C)	_MTLC(Carbamidomethyl (C))SSLIE_	MTLC(1)SSLIE		MTLC(79)SSLIE		0	1	0			REV__nc|ENSG00000127452|Q9NXK8-2|FBXL12	REV__nc|ENSG00000127452|Q9NXK8-2|FBXL12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.2509765625	2	527.251385	1052.48822	0.61028	0.00032177	-0.11767	-6.2044E-05	0.49261	0.00025973	527.2510943310825	77.364	1.0743	77.122	76.792	77.866	-0.24232					54	26	3	0	0	0	0.27161	1	9234	9234		79.451	8.1553	1	2618500	+		52515	22931	36602	36662	57841	57841	300				-0.03592675499953657
MTLCYARIS	9	Unmodified	_MTLCYARIS_					0	0	0		ENSG00000101292|ENST00000678254|PROKR2;ENSG00000169618|ENST00000303786|PROKR1	ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.8179321289062	2	529.262087	1056.50962	-0.52944	-0.00028021	-4.4757	-0.0023688	-5.0051	-0.002649	529.260671968562	82.644	0.65095	82.504	82.086	82.737	-0.14014					21	14	3	0	0	0	0.024541	1	9970	9970		16.473	4.2663	1	176920			52516	2304	36603	36663	57842	57842					-0.016372456805811453
MTLDLVCDL	9	Unmodified	_MTLDLVCDL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.288818359375	2	511.748479	1021.4824	-1.0013	-0.0005124	-0.67893	-0.00034744	-1.6802	-0.00085985	511.7482854493237	83.613	0.47636	83.613	83.477	83.954	0					16	10	2	0	0	0	0.024374	1	10499	10499		49.442	3.4896	1	52420	+		52517	25256	36604	36664	57843	57843					-0.02747774011618276
MTLDLVCDL	9	Unmodified	_MTLDLVCDL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.748479	1021.4824	-0.99179	-0.00050755	2.6099	0.0013356	1.6181	0.00082805	511.75062448620974	83.262	0.25394	83.288	83.13	83.384	0.026558	-0.21506	0.0024907	NaN	49.442	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64011	+		52518	25256	36604	36664							-0.02747774011618276
MTLELLQS	8	Unmodified	_MTLELLQS_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENSG00000187735|ENST00000521604|TCEA1;ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENSG00000187735|ENST00000521604|TCEA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.25592041015625	2	467.749336	933.484119	-0.20301	-9.4957E-05	-3.4643	-0.0016204	-3.6673	-0.0017154	467.74767242667144	76.816	0.28745	76.588	76.444	76.731	-0.22843					11	6	2	0	0	0	0.027866	1	9444	9444		111.65	29.343	1	357640			52519	9653;16027	36605	36665	57844	57844					0.014716030686486192
MTLGGRLP	8	Unmodified	_MTLGGRLP_					0	0	0		ENST00000440377.2_1_1:146644377-146644491:+|nuORF	ENST00000440377.2_1_1:146644377-146644491:+|nuORF	ENST00000440377.2_1_1:146644377-146644491:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.25115966796875	2	422.739105	843.463658	0.60299	0.00025491	-3.4198	-0.0014457	-2.8168	-0.0011908	422.73750218494695	50.827	0.74779	50.715	50.303	51.051	-0.11163					32	19	2	0	0	0	0.027866	1	5178	5178		29.15	0	1	618410			52520	14346	36606	36666	57845	57845					0.03566477199490237
MTLGVLMALV	10	Unmodified	_MTLGVLMALV_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA;ENSG00000184908|ENST00000375679|CLCNKB	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7617797851562	2	524.300681	1046.58681	0.095362	4.9998E-05	2.4297	0.0012739	2.5251	0.0013239	524.3008551890621	59.858	0.38746	59.609	59.335	59.723	-0.24842					23	9	4	0	0	0	0.03519	1	6595	6595		53.351	12.573	1	117870			52521	9380	36607	36667	57846	57846					0.06537972535738845
MTLHGPPF	8	Unmodified	_MTLHGPPF_					0	0	0			REV__ENST00000502295.1_1_5:139027009-139059991:+|nuORF	REV__ENST00000502295.1_1_5:139027009-139059991:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2240295410156	2	450.225831	898.437109	-0.14099	-6.3475E-05	-4.079	-0.0018365	-4.22	-0.0019	450.22384124508926	23.62	3.5535	23.696	21.737	25.29	0.076241					167	78	3	0	0	0	0.75307	2	937	937;962		62.978	5.1671	1	772290	+		52522	30079	36608	36668	57847;57848	57847					-0.016172116918369284
MTLIIKGLF	9	Unmodified	_MTLIIKGLF_					0	0	0			REV__ENST00000455774.1_1_10:29699301-29757982:+|nuORF	REV__ENST00000455774.1_1_10:29699301-29757982:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7793579101562	2	518.317189	1034.61982	-0.44564	-0.00023098	-0.28835	-0.00014945	-0.73398	-0.00038044	518.3168349623335	85.233	2.7267	85.175	84.361	87.088	-0.057617					133	64	3	0	0	0	0.024263	1	10739	10739		71.296	12.514	1	529200	+		52523	32784	36609	36669	57849	57849					0.10389922650097105
MTLIIKGLF	9	Unmodified	_MTLIIKGLF_					0	0	0			REV__ENST00000455774.1_1_10:29699301-29757982:+|nuORF	REV__ENST00000455774.1_1_10:29699301-29757982:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.3173828125	2	518.317189	1034.61982	0.71515	0.00037068	-0.7546	-0.00039112	-0.039446	-2.0446E-05	518.3167252153409	83.891	2.0567	83.722	82.039	84.096	-0.16915					75	47	3	0	0	0	0.35646	1	10157	10157		68.787	2.3575	1	1225000	+		52524	32784	36609	36669	57850	57850					0.10389922650097105
MTLIMIASQ	9	Unmodified	_MTLIMIASQ_					0	0	0			REV__ENST00000466449.5_1_18:77690306-77703530:-|nuORF	REV__ENST00000466449.5_1_18:77690306-77703530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.29730224609375	2	504.266838	1006.51912	0.33323	0.00016804	0.18016	9.0848E-05	0.51339	0.00025889	504.26668795736447	21.329	0.62484	21.151	20.967	21.591	-0.17721					19	12	2	0	0	0	0.024294	1	694	694		21.96	0	1	93213	+		52525	22647	36610	36670	57851	57851					0.016125226049439334
MTLKDIYTW	9	Unmodified	_MTLKDIYTW_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.797119140625	2	585.796817	1169.57908	-0.57842	-0.00033884	0.50935	0.00029837	-0.069077	-4.0465E-05	585.7968307568834	75.649	1.0659	75.377	75.018	76.084	-0.27266					54	26	4	0	0	0	0.16539	1	8938	8938		96.034	27.247	1	1459600			52526	3093	36611	36671	57852	57852					0.0010753653982646938
MTLKDIYTW	9	Unmodified	_MTLKDIYTW_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.7969970703125	2	585.796817	1169.57908	-1.0202	-0.00059763	0.79034	0.00046298	-0.22986	-0.00013465	585.7971193393848	75.619	1.1048	75.36	75.033	76.138	-0.25865					46	27	3	0	0	0	0.013065	1	8954	8954		171.53	89.291	1	1354500			52527	3093	36611	36671	57853	57853					0.0010753653982646938
MTLKDIYTW	9	Unmodified	_MTLKDIYTW_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.7967529296875	2	585.796817	1169.57908	-0.37708	-0.00022089	0.060293	3.532E-05	-0.31679	-0.00018557	585.7966717430108	75.435	0.90331	75.26	74.943	75.846	-0.17548					42	22	3	0	0	0	0.14181	1	8914	8914		101.25	16.337	1	1377200			52528	3093	36611	36671	57854	57854					0.0010753653982646938
MTLKLVSTS	9	Unmodified	_MTLKLVSTS_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;ENST00000561258.1_1_15:62276000-62283926:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2785339355469	2	490.27826	978.541968	0.024403	1.1964E-05	-3.788	-0.0018572	-3.7636	-0.0018452	490.27636576777667	101.4	0.60201	101.4	101.02	101.62	-0.0054474					41	13	4	0	0	0	0.5973	1	12902	12902		52.937	8.8199	1	627060			52529	4326	36612	36672	57855	57855					0.05183864994069154
MTLKQFLDY	9	Unmodified	_MTLKQFLDY_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.8041381835938	2	579.796817	1157.57908	-0.39417	-0.00022854	4.2369	0.0024565	3.8427	0.002228	579.7991903343038	58.902	0.80428	58.72	58.268	59.072	-0.18133					43	19	4	0	0	0	0.024539	1	6511	6511		27.882	0	1	702900			52530	4481	36613	36673	57856	57856					0.006595365398425201
MTLLAEEAR	9	Unmodified	_MTLLAEEAR_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8195190429688	2	517.270967	1032.52738	-1.7204	-0.00088991	1.5116	0.00078193	-0.20875	-0.00010798	517.2709563628034	92.106	0.9114	91.962	91.617	92.528	-0.14357					45	21	4	0	0	0	0.024344	1	11260	11260		30.318	0	1	215100			52531	4943	36614	36674	57857	57857					0.01241792845917189
MTLLDEKF	8	Unmodified	_MTLLDEKF_					0	0	0		ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7594299316406	2	498.757161	995.499769	-0.090849	-4.5312E-05	4.202	0.0020958	4.1111	0.0020504	498.7591878521247	34.478	1.1304	34.254	33.923	35.053	-0.22412					75	28	4	0	0	0	0.94517	1	2537	2537		45.952	3.4775	1	4200700			52532	5620	36615	36675	57858	57858					0.0018388958569630631
MTLLGNFQV	9	Unmodified	_MTLLGNFQV_					0	0	0		ENST00000488045.1_1_4:83417190-83417331:-|nuORF	ENST00000488045.1_1_4:83417190-83417331:-|nuORF	ENST00000488045.1_1_4:83417190-83417331:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.7692565917969	2	511.770603	1021.52665	-1.0099	-0.00051683	-2.4285	-0.0012428	-3.4384	-0.0017597	511.76926221651615	86.219	0.8615	86.243	85.86	86.722	0.023666					54	19	4	0	0	0	0.23085	1	10769	10769		84.916	16.129	1	1899100			52533	15384	36616	36676	57859	57859					0.01674998196881461
MTLNFWTSR	9	Unmodified	_MTLNFWTSR_					0	0	0		ENST00000589797.5_1_17:40733868-40733898:-|nuORF	ENST00000589797.5_1_17:40733868-40733898:-|nuORF	ENST00000589797.5_1_17:40733868-40733898:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.2861328125	2	578.284408	1154.55426	-0.21035	-0.00012164	2.3358	0.0013508	2.1255	0.0012291	578.2855929809436	67.265	0.83892	67.289	66.985	67.824	0.023911					50	20	3	0	0	0	0.49102	1	7946	7946		59.931	6.9941	1	2268700			52534	17315	36617	36677	57860	57860					-0.016830985429123757
MTLNFWTSR	9	Unmodified	_MTLNFWTSR_					0	0	0		ENST00000589797.5_1_17:40733868-40733898:-|nuORF	ENST00000589797.5_1_17:40733868-40733898:-|nuORF	ENST00000589797.5_1_17:40733868-40733898:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	578.284408	1154.55426	-0.46848	-0.00027092	2.5293	0.0014626	2.0608	0.0011917	578.2857848694342	67.457	1.1165	67.169	66.707	67.823	-0.28834	-0.018068	-0.00050741	NaN	59.931	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1912600			52535	17315	36617	36677							-0.016830985429123757
MTLRHMVQ	8	Unmodified	_MTLRHMVQ_					0	0	0		nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;ENST00000498300.5_1_10:86198319-86273265:+|nuORF;nc|ENSG00000107771|Q9H7U1-4|CCSER2	nc|ENSG00000107771|Q9H7U1|CCSER2	nc|ENSG00000107771|Q9H7U1|CCSER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8173828125	2	508.262422	1014.51029	-0.30604	-0.00015555	4.3386	0.0022052	4.0326	0.0020496	508.26530533946527	67.534	1.391	67.296	66.958	68.349	-0.23814					62	33	3	0	0	0	0.027866	1	7920	7920		19.104	0	1	424940			52536	2854	36618	36678	57861	57861					0.0036159375913484837
MTLSEIYQW	9	Unmodified	_MTLSEIYQW_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.7799682617188	2	585.778625	1169.5427	-0.51131	-0.00029951	0.83546	0.00048939	0.32415	0.00018988	585.7790793517119	87.871	0.56232	87.734	87.459	88.021	-0.13743					32	13	3	0	0	0	0.70156	1	10690	10690		45.972	9.5255	1	428200			52537	10209	36619	36679	57862	57862					-0.035293403568857684
MTLSEIYQW	9	Unmodified	_MTLSEIYQW_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.778625	1169.5427	-0.51952	-0.00030432	0.69785	0.00040879	0.17833	0.00010446	585.7788615614214	87.89	0.71848	87.712	87.363	88.082	-0.17874	0.0022958	-2.7104E-06	NaN	45.972	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338110			52538	10209	36619	36679							-0.035293403568857684
MTLSEIYQW	9	Unmodified	_MTLSEIYQW_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.778625	1169.5427	-0.42996	-0.00025186	0.56555	0.00033129	0.13559	7.9427E-05	585.7788757430391	87.819	0.64265	87.683	87.346	87.988	-0.13613	-0.026534	-0.00015771	NaN	45.972	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318420			52539	10209	36619	36679							-0.035293403568857684
MTLVFWLK	8	Unmodified	_MTLVFWLK_					0	0	0			REV__ENSG00000177291|ENST00000321660|GJD4	REV__ENSG00000177291|ENST00000321660|GJD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7691650390625	2	519.296256	1036.57796	0.38678	0.00020086	-2.082	-0.0010812	-1.6952	-0.0008803	519.2955207239828	70.648	0.30396	70.648	70.483	70.787	0					9	6	2	0	0	0	0.027866	1	8524	8524		30.504	0	1	156520	+		52540	27100	36620	36680	57863	57863					0.06113366961585598
MTMFKTQLK	9	Unmodified	_MTMFKTQLK_					0	0	0		ENST00000515764.2_1_4:25863594-25863684:+|nuORF	ENST00000515764.2_1_4:25863594-25863684:+|nuORF	ENST00000515764.2_1_4:25863594-25863684:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3001098632812	2	564.301213	1126.58787	-0.00012427	-7.0126E-08	-2.7677	-0.0015618	-2.7678	-0.0015619	564.299558126796	74.706	1.167	74.447	74.158	75.325	-0.25887					77	28	4	0	0	0	0.247	1	9119	9119		82.75	13.123	1	2219400			52541	15908	36621	36681	57864	57864					0.029641869046599822
MTMFKTQLK	9	Unmodified	_MTMFKTQLK_					0	0	0		ENST00000515764.2_1_4:25863594-25863684:+|nuORF	ENST00000515764.2_1_4:25863594-25863684:+|nuORF	ENST00000515764.2_1_4:25863594-25863684:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.2997436523438	2	564.301213	1126.58787	-1.0102	-0.00057005	-1.9089	-0.0010772	-2.9191	-0.0016472	564.30004153312	74.494	1.107	74.503	74.18	75.288	0.0096512					75	26	4	0	0	0	0.32064	1	9031	9031		72.879	6.45	1	2107000			52542	15908	36621	36681	57865	57865					0.029641869046599822
MTMGTVQRW	9	Unmodified	_MTMGTVQRW_					0	0	0		ENSG00000150768|ENST00000280346|DLAT;ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.79296875	2	555.265161	1108.51577	-0.026731	-1.4843E-05	3.3533	0.0018619	3.3265	0.0018471	555.2667899873517	52.834	0.71328	52.707	52.353	53.066	-0.12705					28	17	2	0	0	0	0.024477	1	5558	5558		35.618	11.416	1	253560			52543	6154	36622	36682	57866	57866					-0.03414727449057864
MTMLHLAVIFL	11	Unmodified	_MTMLHLAVIFL_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MSMS	OPSCC_40_ClassI_Rep-1	4	644.8641357421875	2	644.861437	1287.70832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.76	1	110.64	110.14	111.14	-0.12525								0	0	0	1.3758	1	13599	13599		21.96	2.8564	1				52544	1682	36623	36683	57867	57867					0.07597594898265925
MTMRRRKRRRR	11	Unmodified	_MTMRRRKRRRR_					0	0	0			REV__ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	REV__ZBTB7C|p.D132Tfs*90|1|0.27|ENSG00000184828|chr18:48040714-48040714|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.53912353515625	4	401.492765	1601.94195	0.074159	2.9774E-05	2.4723	0.00099262	2.5465	0.0010224	401.49360114610505	25.765	0.25114	25.538	25.394	25.645	-0.22683					7	5	2	0	0	0	0.024888	1	1265	1265		0.31226	0	1	25175	+		52545	37789	36624	36684	57868	57868					0.16505928900983236
MTNIVPLLS	9	Unmodified	_MTNIVPLLS_					0	0	0			REV__nc|ENSG00000187627|P0DJD0|RGPD1	REV__nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.2822265625	2	494.280803	986.547053	-0.80562	-0.0003982	4.2926	0.0021217	3.4869	0.0017235	494.28288501951863	25.18	1.1089	24.953	24.122	25.231	-0.22683					39	25	3	0	0	0	0.26966	1	1176	1176		79.713	12.219	1	568610	+		52546	27753	36625	36685	57869	57869					0.05324168856691358
MTNIVPLLS	9	Unmodified	_MTNIVPLLS_					0	0	0			REV__nc|ENSG00000187627|P0DJD0|RGPD1	REV__nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2803039550781	2	494.280803	986.547053	1.2428	0.00061427	2.4464	0.0012092	3.6891	0.0018235	494.2818635133095	25.017	0.60288	24.845	24.556	25.159	-0.17151					27	13	3	0	0	0	0.20967	1	1110	1110		87.754	13.499	1	613640	+		52547	27753	36625	36685	57870	57870					0.05324168856691358
MTNKLAEALTT	11	Unmodified	_MTNKLAEALTT_					0	0	0		CON__Q3T052	CON__Q3T052	CON__Q3T052	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	596.81591796875	2	596.815738	1191.61692	-1.7805	-0.0010626	2.9505	0.0017609	1.17	0.00069829	596.8173975052267	34.503	1.1376	34.503	34.168	35.306	0					76	29	4	0	0	0	0.97926	1	2571	2571		41.427	0.85399	1	2670000		+	52548	555	36626	36686	57871	57871					0.028780027346101633
MTPDPGLHPE	10	Unmodified	_MTPDPGLHPE_					0	0	0		ENST00000418914.2_2_1:109825350-109825479:-|nuORF	ENST00000418914.2_2_1:109825350-109825479:-|nuORF	ENST00000418914.2_2_1:109825350-109825479:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.310546875	2	547.252774	1092.491	-0.20537	-0.00011239	2.3533	0.0012878	2.1479	0.0011754	547.253880264625	63.974	0.33255	63.716	63.46	63.792	-0.25824					12	8	2	0	0	0	0.03519	1	7215	7215		26.693	0	1	134520			52549	13946	36627	36687	57872	57872					-0.05155084050784353
MTPGEFRR	8	Unmodified	_MTPGEFRR_					0	0	0		ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.25048828125	2	497.250369	992.486184	-0.18209	-9.0543E-05	0.12883	6.4059E-05	-0.053262	-2.6484E-05	497.2503145705476	25.202	1.2133	25.031	24.558	25.771	-0.17078					59	28	4	0	0	0	0.95679	1	1182	1182		44.117	1.6423	1	1557400			52550	2824	36628	36688	57873	57873					-0.010359234028896935
MTPIPFAR	8	Unmodified	_MTPIPFAR_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.71533203125	2	466.754756	931.494958	0.9415	0.00043945	1.7593	0.00082118	2.7008	0.0012606	466.7554955507282	25.898	0.34103	25.978	25.749	26.09	0.08009					11	7	2	0	0	0	0.027866	1	1211	1211		12.959	4.1369	1	112620			52551	4513	36629	36689	57874	57874					0.026470502335882884
MTPIPPRCT	9	Unmodified	_MTPIPPRCT_					0	0	0			REV__ENST00000397799.1_3_1:36562928-36563456:-|nuORF	REV__ENST00000397799.1_3_1:36562928-36563456:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8185119628906	2	508.256805	1014.49906	0.55495	0.00028206	1.2921	0.00065673	1.8471	0.00093879	508.25720162026596	19.308	0.29797	19.108	19.007	19.305	-0.2001					8	5	2	0	0	0	0.024541	1	391	391		26.693	3.6504	1	16095	+		52552	31784	36630	36690	57875	57875					-0.0076122833502267895
MTPLQLRA	8	Unmodified	_MTPLQLRA_					0	0	0			REV__nc|ENSG00000152894|Q15262|PTPRK;REV__ENST00000524481.5_1_6:128321419-128841710:-|nuORF	REV__nc|ENSG00000152894|Q15262|PTPRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.79522705078125	2	465.265487	928.516422	-0.0219	-1.0189E-05	0.25736	0.00011974	0.23546	0.00010955	465.2655409586653	55.343	0.92607	55.193	54.894	55.82	-0.15036					39	25	2	0	0	0	0.027866	1	6113	6113		24.203	0	1	1580200	+		52553	24868;34385	36631	36691	57876	57876					0.04930435262303945
MTPPGRPLSP	10	Unmodified	_MTPPGRPLSP_					0	0	0			REV__ENST00000436747.5_1_2:242694593-242694881:+|nuORF	REV__ENST00000436747.5_1_2:242694593-242694881:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.23828125	2	526.781502	1051.54845	-0.9964	-0.00052489	-2.8497	-0.0015012	-3.8461	-0.0020261	527.2819681675047	56.554	0.1111	56.554	56.46	56.571	0					4	2	2	0	0	0	0.03519	1	6305	6305		75.043	30.927	1	45814	+		52554	32466	36632	36692	57877	57877					0.02473802945451098
MTPPRTAR	8	Unmodified	_MTPPRTAR_					0	0	0		ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	ENST00000438248.1_1_10:89603626-89603959:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2870788574219	2	465.252911	928.49127	-1.0892	-0.00050676	4.3392	0.0020188	3.25	0.0015121	465.2556142026187	75.23	0.39257	75.23	74.914	75.307	0					14	9	2	0	0	0	0.027866	1	9204	9204		37.159	0	1	397010			52555	14307	36633	36693	57878	57878					0.02416380459726497
MTPSPLSELE	10	Unmodified	_MTPSPLSELE_					0	0	0			REV__sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	REV__sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7806396484375	2	552.26809	1102.52163	-0.55518	-0.00030661	-0.75981	-0.00041962	-1.315	-0.00072623	552.2677589046385	45.404	0.70532	45.193	44.677	45.382	-0.21109					28	19	2	0	0	0	0.03519	1	4321	4321		49.442	0	1	374190	+		52556	37538	36634	36694	57879	57879					-0.025533504564236864
MTPTGSSKRS	10	Unmodified	_MTPTGSSKRS_					0	0	0			REV__ENSG00000114279|ENST00000445105|FGF12	REV__ENSG00000114279|ENST00000445105|FGF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2628173828125	2	526.263673	1050.51279	-0.51906	-0.00027316	0.65592	0.00034519	0.13686	7.2024E-05	526.2628577655713	56.122	1.5904	55.966	55.093	56.684	-0.15602					152	43	5	0	0	0	0.91678	1	6196	6196		52.937	1.6012	1	3888900	+		52557	22114	36635	36695	57880	57880					-0.010442793022320984
MTPVLSPQN	9	Unmodified	_MTPVLSPQN_					0	0	0		nc|ENSG00000142910|Q9GZM7-2|TINAGL1;ENST00000481165.5_1_1:32050098-32051133:+|nuORF;nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1	nc|ENSG00000142910|Q9GZM7-2|TINAGL1	nc|ENSG00000142910|Q9GZM7-2|TINAGL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.76361083984375	2	493.75241	985.490267	0.39627	0.00019566	-1.1061	-0.00054615	-0.70986	-0.00035049	493.7517481450686	74.404	0.46466	74.145	73.986	74.451	-0.25887					16	10	2	0	0	0	0.024319	1	9091	9091		56.721	15.943	1	62653			52558	5595	36636	36696	57881	57881					-0.003058786998508367
MTQDLSPQSD	10	Unmodified	_MTQDLSPQSD_					0	0	0			REV__ENST00000586944.5_1_19:797434-805231:+|nuORF	REV__ENST00000586944.5_1_19:797434-805231:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3273315429688	2	561.242603	1120.47065	0.28475	0.00015981	0.4085	0.00022927	0.69324	0.00038908	561.2429244142297	68.967	1.3005	68.724	68.149	69.449	-0.24277					27	20	2	0	0	0	0.03519	1	7942	7942		31.634	9.6744	1	293220	+		52559	19926	36637	36697	57882	57882					-0.08476299501262474
MTQFWEHR	8	Oxidation (M)	_M(Oxidation (M))TQFWEHR_		M(1)TQFWEHR		M(42)TQFWEHR	0	0	1		ENST00000372067.7_1_6:43752845-43752986:+|nuORF	ENST00000372067.7_1_6:43752845-43752986:+|nuORF	ENST00000372067.7_1_6:43752845-43752986:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.761474609375	2	575.758558	1149.50256	2.5003	0.0014396	2.6235	0.0015105	5.1238	0.0029501	575.7599587348586	16.939	0.66926	16.939	16.78	17.449	0					36	15	4	0	0	0	0.96769	1	118	118		42.396	8.2236	1	571000			52560	13023	36638	36698	57883	57883		484			-0.06620842236816316
MTQKLIDL	8	Oxidation (M)	_M(Oxidation (M))TQKLIDL_		M(1)TQKLIDL		M(72)TQKLIDL	0	0	1		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.2688903808594	2	489.270435	976.526318	-0.53228	-0.00026043	-3.4998	-0.0017123	-4.032	-0.0019728	489.2687257119972	41.37	1.4595	41.234	40.908	42.368	-0.13553					85	38	3	0	0	0	0.64735	2	3636	3636;3646		71.877	13.096	1	9552600			52561	9148	36639	36699	57884;57885	57884		383			0.03711578477020794
MTQKLIDL	8	Oxidation (M)	_M(Oxidation (M))TQKLIDL_		M(1)TQKLIDL		M(82)TQKLIDL	0	0	1		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2686767578125	2	489.270435	976.526318	-0.23171	-0.00011337	-3.6688	-0.0017951	-3.9005	-0.0019084	489.268588081143	41.562	1.4594	41.334	40.966	42.426	-0.2278					93	38	4	0	0	0	0.53593	2	3654	3654;3663		82.241	13.454	1	9281200			52562	9148	36639	36699	57886;57887	57886		383			0.03711578477020794
MTQKLIDL	8	Oxidation (M)	_M(Oxidation (M))TQKLIDL_					0	0	1		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	489.270435	976.526318	0.22085	0.00010806	1.4422	0.00070562	1.663	0.00081367	489.27140915649943	41.401	0.52808	41.278	40.833	41.361	-0.12317	0.036537	0.0049708	NaN	82.241	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130590			52563	9148	36639	36699				383			0.03711578477020794
MTQKLIDL	8	Oxidation (M)	_M(Oxidation (M))TQKLIDL_					0	0	1		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.270435	976.526318	-0.42258	-0.00020676	2.2306	0.0010914	1.808	0.00088461	489.2732737449975	40.963	0.62988	40.986	40.764	41.394	0.023003	-0.25519	0.0057423	NaN	82.241	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153170			52564	9148	36639	36699				383			0.03711578477020794
MTQLGSKGCS	10	Unmodified	_MTQLGSKGCS_					0	0	0			REV__ENST00000460297.1_1_16:448229-448523:+|nuORF	REV__ENST00000460297.1_1_16:448229-448523:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7142028808594	2	506.233527	1010.4525	-0.56232	-0.00028467	-2.9742	-0.0015057	-3.5366	-0.0017903	506.23188283121954	28.917	0.98318	28.748	28.51	29.493	-0.16897					44	22	3	0	0	0	0.03519	1	1750	1750		41.427	11.109	1	538720	+		52565	32843	36640	36700	57888	57888					-0.05230712956949901
MTQPRKTK	8	Unmodified	_MTQPRKTK_					0	0	0		ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2850646972656	2	495.281669	988.548785	-0.56499	-0.00027983	0.82351	0.00040787	0.25852	0.00012804	495.2820530675895	51.699	0.68749	51.551	51.228	51.915	-0.14735					27	19	2	0	0	0	0.027866	1	5457	5457		27.882	0	1	151590			52566	15949	36641	36701	57889	57889					0.054052226652856916
MTQPRKTK	8	Unmodified	_MTQPRKTK_					0	0	0		ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.28533935546875	2	495.281669	988.548785	-0.91919	-0.00045526	1.8445	0.00091352	0.92526	0.00045826	495.28234084827517	51.356	0.92597	51.443	50.926	51.852	0.087006					39	25	2	0	0	0	0.027866	1	5389	5389		26.693	2.4902	1	181480			52567	15949	36641	36701	57890	57890					0.054052226652856916
MTQPTLIYS	9	Unmodified	_MTQPTLIYS_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2656860351562	2	527.267893	1052.52123	-1.0884	-0.00057388	1.8169	0.00095801	0.72852	0.00038413	527.2685862468803	62.409	0.47356	62.17	61.791	62.264	-0.23926					21	12	2	0	0	0	0.72875	1	7241	7241		44.117	9.9443	1	1368200			52568	1520	36642	36702	57891	57891					-0.0029272538561144756
MTQQPRPVL	9	Unmodified	_MTQQPRPVL_					0	0	0		ENST00000557912.1_1_15:34634171-34635317:-|nuORF;ENSG00000182117|ENST00000328848|NOP10	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	ENST00000557912.1_1_15:34634171-34635317:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7589721679688	2	535.294776	1068.575	-0.81771	-0.00043772	0.68691	0.0003677	-0.1308	-7.0017E-05	535.2954145195594	42.317	0.41175	42.085	41.937	42.349	-0.23186					12	8	2	0	0	0	0.024535	1	3780	3780		18.324	0	1	537830			52569	9101	36643	36703	57892	57892					0.043454918367842765
MTQSLVTK	8	Unmodified	_MTQSLVTK_					0	0	0			REV__ENSG00000143105|ENST00000369771|KCNA10	REV__ENSG00000143105|ENST00000369771|KCNA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.2637939453125	2	454.249503	906.484453	-0.11776	-5.3493E-05	0.66468	0.00030193	0.54692	0.00024844	454.24975778138014	21.715	0.48306	21.524	21.275	21.758	-0.19072					15	9	2	0	0	0	0.027866	1	669	669		7.6903	0	1	46438	+		52570	24198	36644	36704	57893	57893					0.027470227885032727
MTRKTEIIV	9	Unmodified	_MTRKTEIIV_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000526990.1_1_11:65349145-65351290:+|nuORF	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.8169555664062	2	545.818084	1089.62162	0.53372	0.00029131	1.4937	0.00081531	2.0275	0.0011066	545.8179825680946	107.43	0.24748	107.43	107.22	107.47	0					8	5	2	0	0	0	0.5973	1	13801	13801		52.937	1.6012	1	230680			52571	8374	36645	36705	57894	57894					0.0803893166803391
MTRLRDLESK	10	Unmodified	_MTRLRDLESK_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.7331848144531	3	416.895812	1247.66561	-0.5168	-0.00021545	2.9081	0.0012124	2.3913	0.00099694	417.2318744337745	39.453	0.11424	39.288	39.228	39.342	-0.16459					6	2	3	0	0	0	0.03519	1	3342	3342		29.551	5.0316	1	120430	+		52572	20986	36646	36706	57895	57895					0.05167916094387692
MTRLRDLESK	10	Unmodified	_MTRLRDLESK_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	416.895812	1247.66561	-0.40528	-0.00016896	3.1705	0.0013218	2.7653	0.0011528	417.2318241950251	39.612	0.35751	39.389	39.302	39.66	-0.22311	0.05054	0.00012206	NaN	29.551	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100780	+		52573	20986	36646	36706							0.05167916094387692
MTRPTRPF	8	Unmodified	_MTRPTRPF_					0	0	0			REV__ENST00000504450.1_1_4:2829003-2833339:+|nuORF	REV__ENST00000504450.1_1_4:2829003-2833339:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2799987792969	2	503.268561	1004.52257	-0.5889	-0.00029638	-1.2511	-0.00062963	-1.84	-0.00092601	503.2674974659809	33.968	1.026	34.02	33.885	34.911	0.051456					32	25	2	0	0	0	0.027866	1	2522	2522		31.955	5.1588	1	280820	+		52574	33982	36647	36707	57896	57896					0.02048953493829231
MTRQAFVAG	9	Unmodified	_MTRQAFVAG_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.2723083496094	2	490.752744	979.490935	-0.34802	-0.00017079	-2.6519	-0.0013014	-2.9999	-0.0014722	490.7511819485033	31.007	0.52318	30.822	30.576	31.099	-0.18503					30	12	3	0	0	0	0.024457	1	2028	2028		37.159	3.6435	1	264890			52575	7729	36648	36708	57897	57897					0.0003696073987384807
MTRRLHSK	8	Unmodified	_MTRRLHSK_					0	0	0			REV__AGTR1|p.R137H|1|0.22|ENSG00000144891|chr3:148741445-148741445|G/A|missense_variant	REV__AGTR1|p.R137H|1|0.22|ENSG00000144891|chr3:148741445-148741445|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3087158203125	2	514.792735	1027.57092	0.46398	0.00023885	1.7157	0.00088321	2.1796	0.0011221	514.7934091097131	87.452	0.38136	87.473	87.178	87.56	0.021263					15	8	2	0	0	0	0.027866	1	10921	10921		30.504	0	1	66301	+		52576	19088	36649	36709	57898	57898					0.058234471337073046
MTRVRVVDN	9	Unmodified	_MTRVRVVDN_					0	0	0		ENSG00000180992|ENST00000372014|MRPL14	ENSG00000180992|ENST00000372014|MRPL14	ENSG00000180992|ENST00000372014|MRPL14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2570190429688	2	545.295307	1088.57606	-0.869	-0.00047386	2.5031	0.0013649	1.6341	0.00089109	545.7987002776307	25.812	0.37343	25.584	25.27	25.644	-0.22781					14	8	2	0	0	0	0.024511	1	1220	1220		13.454	0	1	188980			52577	9014	36650	36710	57899	57899					0.035317062056719806
MTSEMKKKG	9	Unmodified	_MTSEMKKKG_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-4|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.2686767578125	2	520.26737	1038.52019	0.37022	0.00019261	2.6174	0.0013617	2.9876	0.0015543	520.2685111733722	75.214	0.70029	75.038	74.689	75.389	-0.17548					52	16	4	0	0	0	0.31247	1	8908	8908		73.975	2.0973	1	3275900			52578	8503	36651	36711	57900	57900					0.0024673697384969273
MTSLLHVVQ	9	Unmodified	_MTSLLHVVQ_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3031005859375	2	514.283877	1026.5532	-0.2804	-0.0001442	1.5514	0.00079784	1.271	0.00065364	514.7851585581204	37.829	0.67831	37.65	37.165	37.844	-0.17929					33	17	3	0	0	0	0.024477	1	2995	2995		9.7057	0	1	211110	+		52579	20569	36652	36712	57901	57901					0.040986870881852155
MTSLRPAVL	9	Unmodified	_MTSLRPAVL_					0	0	0		ENST00000467133.5_1_2:239102950-239112145:-|nuORF;ENST00000254654.7_1_2:239098583-239103478:-|nuORF;ENST00000463129.5_1_2:239103388-239112145:-|nuORF	ENST00000467133.5_1_2:239102950-239112145:-|nuORF	ENST00000467133.5_1_2:239102950-239112145:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2842712402344	2	494.28642	986.558287	0.4522	0.00022352	-0.48086	-0.00023768	-0.028657	-1.4165E-05	494.28603033614456	51.467	1.0551	51.467	51.143	52.198	0					87	29	4	0	0	0	0.31037	1	5446	5446		74.255	0	1	3656300			52580	11382	36653	36713	57902	57902					0.0644699095081478
MTSSVHLLV	9	Unmodified	_MTSSVHLLV_					0	0	0		ENST00000556407.5_1_14:101246096-101295426:+|nuORF;ENST00000455286.1_1_14:101293843-101295426:+|nuORF	ENST00000556407.5_1_14:101246096-101295426:+|nuORF	ENST00000556407.5_1_14:101246096-101295426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.30609130859375	2	493.770603	985.526652	1.2328	0.00060874	-1.3569	-0.00067002	-0.1241	-6.1275E-05	493.76806901881224	59.457	0.61976	59.257	58.958	59.577	-0.20016					52	16	4	0	0	0	0.024262	1	6738	6738		57.811	0	1	832160			52581	14575	36654	36714	57903	57903					0.0333099819687277
MTSSWRTAR	9	Unmodified	_MTSSWRTAR_					0	0	0		ENST00000491154.1_1_X:153669483-153669528:+|nuORF	ENST00000491154.1_1_X:153669483-153669528:+|nuORF	ENST00000491154.1_1_X:153669483-153669528:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.8262329101562	2	548.271832	1094.52911	-0.5646	-0.00030955	3.1693	0.0017376	2.6047	0.0014281	548.273405402829	95.274	1.0305	95.274	94.919	95.95	0					60	23	4	0	0	0	0.024261	1	12129	12129		45.972	0	1	1534300			52582	15453	36655	36715	57904	57904					-0.014371533454550445
MTSVVSLCAR	10	Unmodified	_MTSVVSLCAR_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7743530273438	2	533.772819	1065.53109	-1.1982	-0.00063957	4.4085	0.0023531	3.2103	0.0017136	533.7748788619867	84.263	1.4675	84.19	83.83	85.298	-0.072769					91	34	4	0	0	0	0.45367	1	10516	10516		93.195	5.4412	1	2577800			52583	8336	36656	36716	57905	57905					0.0009413934812982916
MTTEELTKPGK	11	Unmodified	_MTTEELTKPGK_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	617.8189697265625	2	617.821021	1233.62749	-1.6544	-0.0010221	-1.2815	-0.00079174	-2.9359	-0.0018138	617.8200871444417	29.147	1.0366	29.147	28.696	29.732	0					66	25	4	0	0	0	0.87847	1	1760	1760		52.937	4.9772	1	1867900			52584	9793	36657	36717	57906	57906					0.02001985389051697
MTTEGIAMDS	10	Unmodified	_MTTEGIAMDS_					0	0	0		ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2733154296875	2	528.222825	1054.4311	0.40713	0.00021505	1.1597	0.00061257	1.5668	0.00082762	528.2241893781513	92.07	0.1152	92.079	91.999	92.114	0.0094147					4	2	2	0	0	0	0.03519	1	11596	11596		82.241	10.945	1	101490			52585	2145	36658	36718	57907	57907					-0.09394142776341141
MTTEVPVLV	9	Unmodified	_MTTEVPVLV_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7749328613281	2	494.772811	987.531069	0.52407	0.00025929	3.5931	0.0017778	4.1172	0.0020371	494.77452513173665	49.638	0.48122	49.638	49.287	49.768	0					44	12	5	0	0	0	0.52323	1	5132	5132		57.811	7.7867	1	6330000			52586	9628	36659	36719	57908	57908					0.036804626197977086
MTTEVPVLV	9	Unmodified	_MTTEVPVLV_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7744445800781	2	494.772811	987.531069	0.057696	2.8547E-05	3.9782	0.0019683	4.0359	0.0019969	494.77472324366863	49.839	0.55312	49.688	49.407	49.96	-0.1512					43	14	5	0	0	0	0.40179	2	5134	5134;5145		65.803	9.0821	1	6218900			52587	9628	36659	36719	57909;57910	57909					0.036804626197977086
MTTKKVRCEY	10	Unmodified	_MTTKKVRCEY_					0	0	0			REV__ENSG00000243284|ENST00000368100|VSIG8	REV__ENSG00000243284|ENST00000368100|VSIG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	630.2861328125	2	629.817758	1257.62096	-0.28336	-0.00017847	1.0888	0.00068572	0.80539	0.00050725	630.3175115086947	74.692	0.21416	74.417	74.265	74.479	-0.27573					5	4	2	0	0	0	0.03519	1	8782	8782		19.104	0	1	38406	+		52588	28987	36660	36720	57911	57911					0.002457689567336274
MTTKWKDL	8	Oxidation (M)	_M(Oxidation (M))TTKWKDL_		M(1)TTKWKDL		M(66)TTKWKDL	0	0	1			REV__ENSG00000174173|ENST00000309922|TRMT10C	REV__ENSG00000174173|ENST00000309922|TRMT10C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7696533203125	2	519.76806	1037.52157	-0.75376	-0.00039178	4.0868	0.0021242	3.333	0.0017324	519.7700457791348	35.635	0.83399	35.679	35.305	36.139	0.04406					51	21	3	0	0	0	0.71063	1	2701	2701		66.429	8.1994	1	1697900	+		52589	26838	36661	36721	57912	57912		793			0.004306943342498926
MTTLKKNLA	9	Unmodified	_MTTLKKNLA_					0	0	0		ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1;nc|ENSG00000174483|Q8NFJ9-3|BBS1;ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000528543.1_1_11:66283182-66287297:+|nuORF;ENST00000529953.5_1_11:66282092-66287879:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	ENST00000529955.5_1_11:66281964-66299243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.28228759765625	2	510.299527	1018.5845	0.10535	5.376E-05	-0.68632	-0.00035023	-0.58097	-0.00029647	510.29886900401164	55.822	0.35425	55.822	55.645	55.999	0					11	9	2	0	0	0	0.024523	1	6214	6214		21.96	0	1	137430			52590	8473	36662	36722	57913	57913					0.07595260122286618
MTTLPPLPM	9	Unmodified	_MTTLPPLPM_					0	0	0		ENSG00000137473|ENST00000325106|TTC29	ENSG00000137473|ENST00000325106|TTC29	ENSG00000137473|ENST00000325106|TTC29	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7638244628906	2	500.763932	999.51331	0.45183	0.00022626	-1.6201	-0.00081128	-1.1683	-0.00058502	500.763125712338	99.574	0.91721	99.574	98.912	99.829	0					42	20	3	0	0	0	0.55828	1	12725	12725		55.504	7.5886	1	400030			52591	5125	36663	36723	57914	57914					0.01353424093281319
MTTNPKPNKAL	11	Oxidation (M)	_M(Oxidation (M))TTNPKPNKAL_		M(1)TTNPKPNKAL		M(69)TTNPKPNKAL	0	0	1		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.8294067382812	2	615.82918	1229.64381	-0.82448	-0.00050774	1.6508	0.0010166	0.82629	0.00050885	615.8299733499852	95.885	2.1547	95.885	95.35	97.504	0					105	49	4	0	0	0	0.61592	1	12221	12221		68.846	7.1549	1	1048500			52592	10141	36664	36724	57915	57915		426			0.03817111345824742
MTVAAMQLN	9	Unmodified	_MTVAAMQLN_					0	0	0			REV__nc|ENSG00000179950|Q9UHX1-3|PUF60	REV__nc|ENSG00000179950|Q9UHX1-3|PUF60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.26507568359375	2	489.740988	977.467423	0.15062	7.3767E-05	4.3308	0.002121	4.4815	0.0021948	489.7424269061905	56.046	0.14384	55.829	55.737	55.881	-0.21607					5	3	2	0	0	0	0.024209	1	6051	6051		47.657	12.039	1	163770	+		52593	27305	36665	36725	57916	57916					-0.02221221088962011
MTVAVDMVVT	10	Unmodified	_MTVAVDMVVT_					0	0	0		ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.2696533203125	2	533.269578	1064.5246	0.32729	0.00017453	-0.16374	-8.7317E-05	0.16355	8.7218E-05	533.269399932712	83.24	0.55275	83.15	82.958	83.51	-0.090454					22	12	2	0	0	0	0.64538	1	10363	10363		71.877	14.066	1	845820			52594	6245	36666	36726	57917	57917					-0.0050779860325746995
MTVFNRSSS	9	Unmodified	_MTVFNRSSS_					0	0	0		ENST00000372004.7_1_20:46282573-46282858:+|nuORF	ENST00000372004.7_1_20:46282573-46282858:+|nuORF	ENST00000372004.7_1_20:46282573-46282858:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.290283203125	2	514.745116	1027.47568	-0.0059637	-3.0698E-06	-3.1507	-0.0016218	-3.1567	-0.0016249	514.7432323007439	70.254	0.41055	70.003	69.732	70.143	-0.25063					20	9	3	0	0	0	0.024397	1	8190	8190		39.253	4.0521	1	322020			52595	13020	36667	36727	57918	57918					-0.036959508479640135
MTVISKINP	9	Unmodified	_MTVISKINP_					0	0	0			REV__ENSG00000163527|ENST00000295770|STT3B	REV__ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.28594970703125	2	501.786253	1001.55795	-0.43052	-0.00021603	-3.2444	-0.001628	-3.6749	-0.001844	501.7841104950044	63.06	0.73803	62.876	62.573	63.311	-0.18386					43	19	3	0	0	0	0.6238	1	7134	7134		51.193	9.7661	1	2503700	+		52596	25584	36668	36728	57919	57919					0.05723571230953439
MTVKLKRQ	8	Unmodified	_MTVKLKRQ_					0	0	0			REV__ENST00000395564.8_1_7:48134363-48139289:+|nuORF	REV__ENST00000395564.8_1_7:48134363-48139289:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7742919921875	2	502.307687	1002.60082	-0.93304	-0.00046867	0.70999	0.00035663	-0.22304	-0.00011204	502.30685640358604	90.306	0.25366	90.306	90.173	90.427	0					7	5	2	0	0	0	0.027866	1	11416	11416		35.618	2.8059	1	75417	+		52597	31706	36669	36729	57920	57920					0.09962386079064345
MTVLLLRLV	9	Unmodified	_MTVLLLRLV_					0	0	0			REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.759033203125	2	529.343738	1056.67292	0.10303	5.454E-05	-3.4617	-0.0018324	-3.3587	-0.0017779	529.3416736971676	84.846	1.7935	84.846	84.463	86.257	0					90	42	3	0	0	0	0.024427	1	10752	10752		26.693	0	1	257390	+		52598	26614	36670	36730	57921	57921					0.14685300432756776
MTVMSRRVCV	10	Unmodified	_MTVMSRRVCV_					0	0	0		ENSG00000169488|ENST00000305051|OR4K15	ENSG00000169488|ENST00000305051|OR4K15	ENSG00000169488|ENST00000305051|OR4K15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	591.300048828125	2	591.301221	1180.58789	-1.0184	-0.0006022	0.39736	0.00023496	-0.62107	-0.00036724	591.3012128212367	64.851	1.0798	64.616	64.216	65.296	-0.2345					58	26	3	0	0	0	0.85955	1	7391	7391		56.721	1.9447	1	1780000			52599	7941	36671	36731	57922	57922					0.004818636329900983
MTVMSRRVCV	10	Unmodified	_MTVMSRRVCV_					0	0	0		ENSG00000169488|ENST00000305051|OR4K15	ENSG00000169488|ENST00000305051|OR4K15	ENSG00000169488|ENST00000305051|OR4K15	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	591.301221	1180.58789	-1.4444	-0.0008541	0.78685	0.00046526	-0.65759	-0.00038884	591.3015208842392	64.792	1.0761	64.589	64.028	65.104	-0.20254	-0.014326	0.00029639	NaN	56.721	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124900			52600	7941	36671	36731							0.004818636329900983
MTVNRMGVV	9	Unmodified	_MTVNRMGVV_					0	0	0			REV__ENSG00000075643|ENST00000261326|MOCOS	REV__ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7608337402344	2	503.762255	1005.50996	-0.36018	-0.00018145	-2.8968	-0.0014593	-3.257	-0.0016408	503.76064943333705	65.335	0.98286	65.1	64.607	65.59	-0.2345					45	23	3	0	0	0	0.29158	1	7455	7455		76.774	3.8949	1	2105600	+		52601	20554	36672	36732	57923	57923					0.007421740392828724
MTVRQCNF	8	Carbamidomethyl (C)	_MTVRQC(Carbamidomethyl (C))NF_	MTVRQC(1)NF		MTVRQC(69)NF		0	1	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.23876953125	2	528.241686	1054.46882	-0.63625	-0.00033609	-3.8426	-0.0020298	-4.4788	-0.0023659	528.2394985697882	67.637	3.6181	67.637	66.41	70.029	0					256	93	4	0	0	0	0.68164	1	8172	8172		68.787	14.011	1	5184300			52602	5322	36673	36733	57924	57924	71				-0.056235870001955846
MTVRQCNF	8	Carbamidomethyl (C)	_MTVRQC(Carbamidomethyl (C))NF_	MTVRQC(1)NF		MTVRQC(91)NF		0	1	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2392578125	2	528.241686	1054.46882	-0.16877	-8.9152E-05	-4.3454	-0.0022954	-4.5142	-0.0023846	528.2392665310336	67.922	3.5687	67.634	66.474	70.042	-0.28834					255	91	4	0	0	0	0.44658	1	8184	8184		90.777	24.347	1	4931700			52603	5322	36673	36733	57925	57925	71				-0.056235870001955846
MTVVAWWF	8	Unmodified	_MTVVAWWF_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4;REV__ENSG00000182255|ENST00000328224|KCNA4;REV__ENSG00000131398|ENST00000477616|KCNC3;REV__ENSG00000130037|ENST00000252321|KCNA5;REV__ENSG00000143105|ENST00000369771|KCNA10;REV__ENSG00000177272|ENST00000369769|KCNA3	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7854614257812	2	520.257131	1038.49971	0.67682	0.00035212	-3.9694	-0.0020651	-3.2926	-0.001713	520.2549370649003	78.277	0.65766	78.085	77.806	78.464	-0.1921					35	15	3	0	0	0	0.027866	1	9665	9665		28.254	0	1	350890	+		52604	23034;25957;33686;23208;27097;27462;23076;24198	36674	36734	57926	57926					-0.018000656236608847
MTYCWPSI	8	Unmodified	_MTYCWPSI_					0	0	0			REV__ENSG00000198670|ENST00000316300|LPA	REV__ENSG00000198670|ENST00000316300|LPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8085021972656	2	500.716981	999.41941	0.33778	0.00016913	-4.035	-0.0020204	-3.6972	-0.0018512	500.71521462074696	42.551	0.32052	42.551	42.322	42.642	0					13	8	2	0	0	0	0.027866	1	3892	3892		30.504	11.144	1	97736	+		52605	28446	36675	36735	57927	57927					-0.08032295009013524
MTYCWPSI	8	Unmodified	_MTYCWPSI_					0	0	0			REV__ENSG00000198670|ENST00000316300|LPA	REV__ENSG00000198670|ENST00000316300|LPA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.716981	999.41941	-0.050663	-2.5368E-05	-2.6863	-0.0013451	-2.7369	-0.0013704	500.7155572812592	42.721	0.35978	42.582	42.413	42.773	-0.13929	0.01523	0.00076689	NaN	30.504	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65749	+		52606	28446	36675	36735							-0.08032295009013524
MTYMFLTKK	9	Unmodified	_MTYMFLTKK_					0	0	0			REV__ENST00000412830.7_1_12:108086870-108090316:+|nuORF	REV__ENST00000412830.7_1_12:108086870-108090316:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.803466796875	2	581.803588	1161.59262	-0.82455	-0.00047972	0.89153	0.0005187	0.066985	3.8972E-05	581.8041084646998	63.717	0.96803	63.525	63.109	64.077	-0.19243					46	24	2	0	0	0	0.15366	2	7232	7232;7244		98.629	29.761	1	3947100	+		52607	32010	36676	36736	57928;57929	57928					0.018290710474047955
MVAFKGVWT	9	Unmodified	_MVAFKGVWT_					0	0	0		nc|ENSG00000171885|P55087-2|AQP4;ENSG00000171885|ENST00000383168|AQP4	nc|ENSG00000171885|P55087-2|AQP4	nc|ENSG00000171885|P55087-2|AQP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.793212890625	2	519.775688	1037.53682	-1.2892	-0.0006701	-2.284	-0.0011872	-3.5732	-0.0018573	519.7749649173811	52.291	0.78065	52.022	51.691	52.471	-0.26903					47	20	4	0	0	0	0.024412	1	5371	5371		31.955	8.9124	1	171750			52608	8216	36677	36737	57930	57930					0.01955605922103132
MVAFKGVWT	9	Unmodified	_MVAFKGVWT_					0	0	0		nc|ENSG00000171885|P55087-2|AQP4;ENSG00000171885|ENST00000383168|AQP4	nc|ENSG00000171885|P55087-2|AQP4	nc|ENSG00000171885|P55087-2|AQP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.775688	1037.53682	-0.0023724	-1.2331E-06	-3.7475	-0.0019479	-3.7499	-0.0019491	520.2756166574231	52.271	0.42081	52.087	51.852	52.273	-0.18404	0.12744	-0.0003809	NaN	31.955	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171710			52609	8216	36677	36737							0.01955605922103132
MVAGSVWIE	9	Unmodified	_MVAGSVWIE_					0	0	0		SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|39|3|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|25|2|sense	SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|39|3|sense	SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|39|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.25115966796875	2	496.249503	990.484453	0.72129	0.00035794	3.3626	0.0016687	4.0839	0.0020266	496.25091511055354	76.904	0.79115	76.904	76.719	77.51	0					30	18	2	0	0	0	0.92825	1	9498	9498		30.504	0	1	760270			52610	38034	36678	36738	57931	57931					-0.011169772115181331
MVAIGKISEL	10	Unmodified	_MVAIGKISEL_					0	0	0			REV__ENSG00000183605|ENST00000355697|SFXN4	REV__ENSG00000183605|ENST00000355697|SFXN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.321533203125	2	530.807185	1059.59982	-0.64664	-0.00034324	-1.845	-0.00097933	-2.4916	-0.0013226	530.8053992256938	94.751	0.34607	94.613	94.418	94.765	-0.13779					12	7	2	0	0	0	0.03519	1	11675	11675		15.642	0	1	45389	+		52611	27588	36679	36739	57932	57932					0.07240126919487011
MVAILGVESA	10	Unmodified	_MVAILGVESA_					0	0	0		ENST00000546954.1_1_12:120882345-120882465:-|nuORF	ENST00000546954.1_1_12:120882345-120882465:-|nuORF	ENST00000546954.1_1_12:120882345-120882465:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.3236389160156	2	495.270435	988.526318	-0.50733	-0.00025126	2.1572	0.0010684	1.6498	0.00081711	495.27073602788386	64.219	0.24161	63.992	63.825	64.066	-0.22773					6	5	2	0	0	0	0.03519	1	7292	7292		21.96	0	1	34935			52612	16517	36680	36740	57933	57933					0.031595784770274804
MVAIVLGAF	9	Unmodified	_MVAIVLGAF_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.75897216796875	2	460.767332	919.52011	0.16068	7.4036E-05	4.2771	0.0019707	4.4377	0.0020448	460.76916062589333	36.793	0.3926	36.831	36.648	37.041	0.038044					14	9	2	0	0	0	0.024389	1	2884	2884		21.702	0	1	117030			52613	6212	36681	36741	57934	57934					0.057131050361590496
MVAKPRIW	8	Unmodified	_MVAKPRIW_					0	0	0		ENST00000280560.12_2_12:123413541-123413673:-|nuORF	ENST00000280560.12_2_12:123413541-123413673:-|nuORF	ENST00000280560.12_2_12:123413541-123413673:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.3092956542969	2	500.791672	999.568792	-0.31828	-0.00015939	2.6809	0.0013426	2.3626	0.0011832	500.79279912679937	31.983	0.5575	32.048	31.723	32.281	0.065771					23	13	2	0	0	0	0.027866	1	2118	2118		62.978	17.026	1	886510			52614	11715	36682	36742	57935	57935					0.06899018395915846
MVALEMLLL	9	Unmodified	_MVALEMLLL_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8143310546875	2	516.795232	1031.57591	-1.0159	-0.00052503	1.4576	0.0007533	0.4417	0.00022827	516.7958500093041	64.641	0.71621	64.686	64.372	65.089	0.045502					50	18	4	0	0	0	0.024436	1	7585	7585		30.504	1.3541	1	4461500			52615	4054	36683	36743	57936	57936					0.061385701614653954
MVALLLCEV	9	Unmodified	_MVALLLCEV_					0	0	0			REV__OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	REV__OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2843017578125	2	495.771757	989.52896	0.079552	3.944E-05	0.28098	0.0001393	0.36053	0.00017874	495.77172437119424	50.327	0.45511	50.047	49.766	50.221	-0.27977					23	11	3	0	0	0	0.024325	1	5071	5071		24.203	2.5004	1	284890	+		52616	28947	36684	36744	57937	57937					0.03377710610311624
MVALQAANPP	10	Unmodified	_MVALQAANPP_					0	0	0			REV__nc|ENSG00000183283|Q15038-4|DAZAP2	REV__nc|ENSG00000183283|Q15038-4|DAZAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.26605224609375	2	506.268227	1010.5219	-0.9751	-0.00049366	-2.9626	-0.0014999	-3.9377	-0.0019935	506.2666254725233	62.709	1.1122	62.709	62.446	63.558	0					51	28	2	0	0	0	1.089	1	7303	7303		34.173	1.3601	1	3607200	+		52617	27560	36685	36745	57938	57938					0.017061140540931774
MVALVINSP	9	Unmodified	_MVALVINSP_					0	0	0			REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.29840087890625	2	472.267696	942.520839	0.19227	9.0804E-05	3.5868	0.001694	3.7791	0.0017848	472.26964168050523	32.972	0.36827	32.771	32.569	32.937	-0.20019					14	8	3	0	0	0	0.024495	1	2311	2311		34.173	17.468	1	181050	+		52618	21282	36686	36746	57939	57939					0.04727899685212833
MVANLSRGP	9	Unmodified	_MVANLSRGP_					0	0	0		ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.75433349609375	2	472.752744	943.490935	-0.53815	-0.00025441	2.0839	0.00098515	1.5457	0.00073074	472.7538156002825	39.589	1.3408	39.49	39.091	40.431	-0.098755					113	36	6	0	0	0	0.35646	2	3392	3392;3439		68.787	5.3247	1	12900000			52619	10305	36687	36747	57940;57941	57940					0.016929607398765256
MVANLSRGP	9	Unmodified	_MVANLSRGP_					0	0	0		ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7554626464844	2	472.752744	943.490935	-0.39794	-0.00018813	2.1172	0.0010009	1.7193	0.0008128	472.7538756619408	39.8	1.1404	39.823	39.455	40.596	0.023727					86	31	4	0	0	0	0.35646	1	3394	3394		68.787	5.4806	1	14108000			52620	10305	36687	36747	57942	57942					0.016929607398765256
MVAPAVASV	9	Unmodified	_MVAPAVASV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.73388671875	2	422.733489	843.452425	0.78885	0.00033347	-0.65136	-0.00027535	0.13749	5.8121E-05	422.7331791679391	59.292	0.81348	59.292	58.999	59.813	0					56	21	4	0	0	0	0.015333	2	6766	6766;6779		160.17	67.98	1	2603600			52621	8757	36688	36748	57943;57944	57943					0.024436551053554467
MVAPAVASV	9	Unmodified	_MVAPAVASV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.7334289550781	2	422.733489	843.452425	0.49037	0.0002073	-0.10618	-4.4886E-05	0.38419	0.00016241	422.73332418552116	59.209	0.94997	59.294	58.957	59.906	0.085682					55	25	4	0	0	0	0.013308	1	6676	6676		170.31	72.841	1	2774400			52622	8757	36688	36748	57945	57945					0.024436551053554467
MVAPAVASV	9	Unmodified	_MVAPAVASV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.733642578125	2	422.733489	843.452425	0.47034	0.00019883	-0.53102	-0.00022448	-0.060679	-2.5651E-05	422.7332481637406	59.649	0.88911	59.401	59.13	60.019	-0.24841					49	22	4	0	0	0	0.049708	1	6596	6596		128.82	51.969	1	1157300			52623	8757	36688	36748	57946	57946					0.024436551053554467
MVAPAVASV	9	Unmodified	_MVAPAVASV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.733489	843.452425	0.89239	0.00037724	-0.79745	-0.00033711	0.094938	4.0133E-05	422.7331559025918	59.531	1.2197	59.331	59.028	60.248	-0.20016	-0.011552	-0.00019583	NaN	170.31	69	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2344600			52624	8757	36688	36748							0.024436551053554467
MVAPAVASV	9	Unmodified	_MVAPAVASV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	422.733489	843.452425	0.94395	0.00039904	-0.92786	-0.00039224	0.016096	6.8044E-06	422.7331120436481	59.552	0.71149	59.354	59.091	59.802	-0.19742	0.012268	-0.00030608	NaN	170.31	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1166400			52625	8757	36688	36748							0.024436551053554467
MVAPAVASV	9	Unmodified	_MVAPAVASV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.733489	843.452425	0.74481	0.00031485	-0.45784	-0.00019355	0.28696	0.00012131	422.73318421460937	59.557	0.80482	59.381	59.117	59.922	-0.1761	0.038662	9.1296E-05	NaN	170.31	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1377500			52626	8757	36688	36748							0.024436551053554467
MVAPVVLR	8	Unmodified	_MVAPVVLR_					0	0	0		ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2899475097656	2	442.772948	883.531344	-0.37376	-0.00016549	-3.6138	-0.0016001	-3.9876	-0.0017656	442.7711153094564	44.9	0.47157	44.689	44.399	44.871	-0.21109					18	11	2	0	0	0	0.027866	1	4169	4169		19.36	4.6959	1	252470			52627	11191	36689	36749	57947	57947					0.08491927130307886
MVAPVVLR	8	Unmodified	_MVAPVVLR_					0	0	0		ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	442.772948	883.531344	-0.10146	-4.4923E-05	-8.3137	-0.0036811	-8.4152	-0.003726	442.76893960646436	44.772	0.45415	44.809	44.612	45.067	0.036903	0.099274	-0.0036966	NaN	25.45	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82870			52628	11191	36689	36749							0.08491927130307886
MVAPVVLR	8	Unmodified	_MVAPVVLR_					0	0	0		ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.772948	883.531344	-1.061	-0.00046979	-2.4924	-0.0011036	-3.5534	-0.0015733	442.77150914569665	44.74	0.47012	44.641	44.472	44.942	-0.099445	-0.069526	0.0014585	NaN	25.45	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157190			52629	11191	36689	36749							0.08491927130307886
MVAPVVLR	8	Unmodified	_MVAPVVLR_					0	0	0		ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	ENST00000222812.7_1_7:73113575-73114067:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.772948	883.531344	-0.62177	-0.0002753	-3.202	-0.0014177	-3.8237	-0.001693	442.77128408845107	44.954	0.39745	44.702	44.508	44.905	-0.25252	-0.0083977	0.00083013	NaN	25.45	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226610			52630	11191	36689	36749							0.08491927130307886
MVAVFLTFL	9	Oxidation (M)	_M(Oxidation (M))VAVFLTFL_		M(1)VAVFLTFL		M(56)VAVFLTFL	0	0	1		ENSG00000089060|ENST00000680972|SLC8B1;ENST00000548477.5_1_12:113758097-113758427:-|nuORF	ENSG00000089060|ENST00000680972|SLC8B1	ENSG00000089060|ENST00000680972|SLC8B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7898559570312	2	528.793546	1055.57254	-0.87845	-0.00046452	-4.3725	-0.0023121	-5.2509	-0.0027767	528.7907742527103	104.54	0.93262	104.41	104.11	105.05	-0.12927					65	29	3	0	0	0	0.55828	1	13049	13049		55.504	7.5886	1	925510			52631	1892	36690	36750	57948	57948		68			0.0469764337910874
MVCFNPSLN	9	Unmodified	_MVCFNPSLN_					0	0	0			REV__ENSG00000217128|ENST00000510461|FNIP1	REV__ENSG00000217128|ENST00000510461|FNIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3031005859375	2	512.733163	1023.45177	-0.020226	-1.037E-05	-1.1382	-0.00058358	-1.1584	-0.00059395	512.7325735481447	37.522	0.35493	37.329	37.114	37.469	-0.193					12	8	2	0	0	0	0.024487	1	2995	2995		17.365	0	1	97075	+		52632	28820	36691	36751	57949	57949					-0.059015076059949934
MVCGFLFPN	9	Unmodified	_MVCGFLFPN_					0	0	0		ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2867431640625	2	514.240624	1026.46669	-0.10232	-5.2616E-05	1.942	0.00099863	1.8396	0.00094602	514.2414729369412	72.473	0.46838	72.197	72.028	72.497	-0.2769					15	10	2	0	0	0	0.024497	1	8486	8486		20.482	4.8456	1	110430			52633	8220	36692	36752	57950	57950					-0.04548015738009781
MVCPAPCWLL	10	Unmodified	_MVCPAPCWLL_					0	0	0		ENST00000491671.1_1_22:45705112-45705283:+|nuORF	ENST00000491671.1_1_22:45705112-45705283:+|nuORF	ENST00000491671.1_1_22:45705112-45705283:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.7726440429688	2	566.771234	1131.52791	3.3609	0.0019049	3.2294	0.0018304	6.5903	0.0037352	566.772994453207	18.314	0.57397	18.378	18.222	18.796	0.063307					17	11	2	0	0	0	1.1309	1	233	233		26.796	1.3459	1	75882			52634	15466	36693	36753	57951	57951					-0.032588270302312594
MVDEWCQN	8	Unmodified	_MVDEWCQN_					0	0	0		ENST00000474900.5_1_11:132182607-132182652:+|nuORF	ENST00000474900.5_1_11:132182607-132182652:+|nuORF	ENST00000474900.5_1_11:132182607-132182652:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7880249023438	2	512.696777	1023.379	0.6668	0.00034187	-3.1635	-0.0016219	-2.4967	-0.00128	512.695277648735	71.303	0.39135	71.097	70.833	71.225	-0.20613					12	8	2	0	0	0	0.027866	1	8320	8320		60.294	7.9948	1	85760			52635	15043	36694	36754	57952	57952					-0.13175261399430838
MVDFILIAV	9	Unmodified	_MVDFILIAV_					0	0	0		ENSG00000205497|ENST00000641898|OR51A4;ENSG00000205496|ENST00000380371|OR51A2	ENSG00000205497|ENST00000641898|OR51A4	ENSG00000205497|ENST00000641898|OR51A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7948913574219	2	510.793546	1019.57254	-0.98865	-0.000505	4.0919	0.0020901	3.1032	0.0015851	510.79553242729725	37.956	0.94645	37.737	37.463	38.409	-0.21848					61	26	3	0	0	0	0.55828	1	3066	3066		55.504	0	1	2464000			52636	10431	36695	36755	57953	57953					0.06353643379122786
MVDSKLLF	8	Unmodified	_MVDSKLLF_					0	0	0			REV__nc|ENSG00000102098|Q9UQR0-2|SCML2	REV__nc|ENSG00000102098|Q9UQR0-2|SCML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2849426269531	2	476.762246	951.50994	-0.2396	-0.00011423	4.3381	0.0020683	4.0985	0.001954	476.76421710462915	25.409	0.33609	25.182	24.975	25.311	-0.22683					14	7	2	0	0	0	0.027866	1	1183	1183		33.516	0	1	207220	+		52637	21287	36696	36756	57954	57954					0.03224497310941388
MVEIMYQV	8	Unmodified	_MVEIMYQV_					0	0	0			REV__ENSG00000163510|ENST00000410053|CWC22	REV__ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7455749511719	2	506.745739	1011.47692	0.56345	0.00028553	-0.58782	-0.00029787	-0.024367	-1.2348E-05	506.74536865311615	82.137	0.87025	82.027	81.725	82.596	-0.11006					55	20	4	0	0	0	0.87148	1	10219	10219		53.351	0	1	1354200	+		52638	25579	36697	36757	57955	57955					-0.028354528034356008
MVETWQNNQT	10	Unmodified	_MVETWQNNQT_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-4|PATL1	REV__nc|ENSG00000166889|Q86TB9-4|PATL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.9034118652344	3	417.520522	1249.53974	-0.089184	-3.7236E-05	-2.5023	-0.0010448	-2.5915	-0.001082	417.51935098283116	32.634	1.2636	32.477	31.861	33.125	-0.15772					59	30	2	0	0	0	0.03519	1	2159	2159		32.751	3.1998	1	334130	+		52639	26075	36698	36758	57956	57956					-0.07505215481705818
MVEVGHVPYGF	11	Unmodified	_MVEVGHVPYGF_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.560791015625	3	412.202353	1233.58523	1.1106	0.00045777	-3.0691	-0.0012651	-1.9585	-0.00080731	412.20101167118946	19.976	0.97486	19.776	19.554	20.529	-0.2001					26	19	2	0	0	0	0.024748	1	547	547		30.569	8.7884	1	36246	+		52640	26099	36699	36759	57957	57957					-0.022219452286663
MVEVGHVPYGF	11	Unmodified	_MVEVGHVPYGF_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	412.202353	1233.58523	0.66072	0.00027235	-2.9741	-0.0012259	-2.3134	-0.00095357	412.2010279951738	20.052	0.68387	19.829	19.582	20.266	-0.22344	0.026459	5.2762E-05	NaN	30.569	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33588	+		52641	26099	36699	36759							-0.022219452286663
MVFADPRSPPW	11	Unmodified	_MVFADPRSPPW_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7803649902344	3	434.881502	1301.62268	-0.42469	-0.00018469	0.34319	0.00014925	-0.081499	-3.5443E-05	434.8831524288492	38.029	0.20764	37.811	37.718	37.926	-0.21848					7	5	2	0	0	0	0.024731	1	3084	3084		30.569	7.191	1	46053			52642	8888	36700	36760	57958	57958					-0.016068539630396117
MVFDHLQA	8	Unmodified	_MVFDHLQA_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.731201171875	2	480.73402	959.453487	-0.13761	-6.6153E-05	-3.8859	-0.0018681	-4.0235	-0.0019342	480.7321315524798	31.624	6.3562	31.624	29.773	36.129	0					309	163	4	0	0	0	0.68535	2	2073	2073;2192		68.485	17.149	1	7088900	+		52643	20508	36701	36761	57959;57960	57959					-0.027861305257374624
MVFDYLVK	8	Unmodified	_MVFDYLVK_					0	0	0			REV__ENSG00000143753|ENST00000323699|DEGS1	REV__ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7682189941406	2	507.770071	1013.52559	-0.63032	-0.00032006	-3.6035	-0.0018297	-4.2338	-0.0021498	507.76808491514674	60.584	2.4414	60.584	59.675	62.117	0					199	65	4	0	0	0	0.42327	2	7004	6991;7004		94.006	19.49	1	6914900	+		52644	24277	36702	36762	57961;57962	57962					0.019367838279663374
MVFVFICF	8	Unmodified	_MVFVFICF_					0	0	0		ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	ENSG00000203933|ENST00000370540|CXorf66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.29339599609375	2	503.25046	1004.48637	0.37023	0.00018632	-1.9782	-0.00099554	-1.608	-0.00080923	503.2490409039873	71.093	0.26086	70.878	70.695	70.956	-0.21425					6	5	2	0	0	0	0.027866	1	8286	8286		24.504	7.799	1	67811			52645	10288	36703	36763	57963	57963					-0.015696397272563445
MVFWWINLM	9	Unmodified	_MVFWWINLM_					0	0	0			REV__ENSG00000012660|ENST00000304434|ELOVL5	REV__ENSG00000012660|ENST00000304434|ELOVL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.8909606933594	3	413.873291	1238.59804	-1.1358	-0.00047007	-4.0854	-0.0016908	-5.2212	-0.0021609	413.87176095602774	21.512	0.48646	21.299	21.02	21.506	-0.2128					21	9	3	0	0	0	0.024511	1	617	617		25.574	12.617	1	41244	+		52646	19945	36704	36764	57964	57964					-0.011712053701103287
MVGIRPGWLLA	11	Unmodified	_MVGIRPGWLLA_					0	0	0			REV__ENST00000255977.6_2_7:140153916-140154039:-|nuORF	REV__ENST00000255977.6_2_7:140153916-140154039:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	606.833251953125	2	606.849719	1211.68488	-0.38971	-0.0002365	3.3404	0.0020271	2.9507	0.0017906	607.3511810302824	54.707	0.23462	54.557	54.442	54.676	-0.15036					10	6	2	0	0	0	0.024743	1	5960	5960		34.173	0	1	159260	+		52647	29546	36705	36765	57965	57965					0.08750917175962059
MVGTVVVLEV	10	Unmodified	_MVGTVVVLEV_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000174227|ENST00000453061|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303466796875	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	1.0122	1	11138	11138		44.377	0.26039	1	11993000			52648	8453	36706	36766	57966	57966					0.06840724545213561
MVGTVVVLEV	10	Unmodified	_MVGTVVVLEV_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000174227|ENST00000453061|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3036499023438	2	523.301736	1044.58892	0.099796	5.2223E-05	3.2844	0.0017187	3.3842	0.001771	523.3035080797467	89.564	0.58639	89.579	89.299	89.885	0.015564					33	13	3	0	0	0	0.55353	1	11240	11240		82.241	2.7895	1	745530			52649	8453	36706	36766	57967	57967					0.06840724545213561
MVGTVVVLEV	10	Unmodified	_MVGTVVVLEV_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000174227|ENST00000453061|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3037109375	2	523.301736	1044.58892	0.50944	0.00026659	2.7838	0.0014567	3.2932	0.0017233	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	1.0393	1	10339	10339		40.778	0	1	3714800			52650	8453	36706	36766	57968	57968					0.06840724545213561
MVGTVVVLEV	10	Unmodified	_MVGTVVVLEV_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000174227|ENST00000453061|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.301736	1044.58892	-0.78582	-0.00041122	4.0583	0.0021237	3.2725	0.0017125	523.3038779969879	89.481	0.67202	89.481	89.144	89.816	0	-0.063859	0.00020397	NaN	82.241	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606200			52651	8453	36706	36766							0.06840724545213561
MVGTVVVLEV	10	Unmodified	_MVGTVVVLEV_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000174227|ENST00000453061|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	523.301736	1044.58892	0.14512	7.5942E-05	3.2274	0.0016889	3.3725	0.0017648	523.3034587451363	89.598	0.54921	89.577	89.283	89.833	-0.021645	0.031317	-0.00066566	NaN	82.241	40	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592480			52652	8453	36706	36766							0.06840724545213561
MVGWFIKP	8	Unmodified	_MVGWFIKP_					0	0	0		ENSG00000077616|ENST00000534061|NAALAD2;nc|ENSG00000077616|Q9Y3Q0-2|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.268798828125	2	489.267499	976.520445	-0.23171	-0.00011337	2.3332	0.0011416	2.1015	0.0010282	489.268588081143	41.562	1.4594	41.334	40.966	42.426	-0.2278					93	38	4	0	0	0	0.96719	1	3696	3696		42.474	0.078325	1	9281200			52653	1619	36707	36767	57969	57969					0.031245247560150347
MVHAFLIH	8	Unmodified	_MVHAFLIH_					0	0	0		ENSG00000125843|ENST00000615891|AP5S1	ENSG00000125843|ENST00000615891|AP5S1	ENSG00000125843|ENST00000615891|AP5S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.6464538574219	2	484.262748	966.510943	0.097767	4.7345E-05	0.91245	0.00044186	1.0102	0.00048921	484.2630928953151	46.84	0.37978	46.84	46.587	46.967	0					13	9	2	0	0	0	0.027866	1	4675	4675		24.504	12.297	1	134380			52654	4148	36708	36768	57970	57970					0.02634756470490629
MVHAKFQSN	9	Unmodified	_MVHAKFQSN_					0	0	0		ENST00000478069.1_1_4:95290987-95291311:+|nuORF	ENST00000478069.1_1_4:95290987-95291311:+|nuORF	ENST00000478069.1_1_4:95290987-95291311:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2616577148438	2	531.263476	1060.5124	0.075177	3.9939E-05	-4.31	-0.0022898	-4.2348	-0.0022498	531.261172765344	103.97	0.55952	103.85	103.52	104.08	-0.12561					26	13	3	0	0	0	0.87448	1	12937	12937		34.173	0.65696	1	217030			52655	15127	36709	36769	57971	57971					-0.015436542313864265
MVHQVLKYGLL	11	Unmodified	_MVHQVLKYGLL_					0	0	0			REV__ENST00000436950.5_1_2:64455600-64456705:+|nuORF	REV__ENST00000436950.5_1_2:64455600-64456705:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2663269042969	3	434.253048	1299.73731	2.4896	0.0010811	0.67653	0.00029379	3.1661	0.0013749	434.2531310284704	24.557	0.73946	24.377	23.983	24.723	-0.18089					25	16	3	0	0	0	0.024727	1	1065	1065		23.378	0	1	69796	+		52656	32468	36710	36770	57972	57972					0.09943455518919109
MVIANSGVLT	10	Unmodified	_MVIANSGVLT_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.801025390625	2	502.775885	1003.53722	0.041855	2.1044E-05	0.30147	0.00015157	0.34332	0.00017261	502.7755941705641	46.355	0.80367	46.355	46.199	47.003	0					40	21	3	0	0	0	0.03519	1	4646	4646		44.377	7.2181	1	147250			52657	8661	36711	36771	57973	57973					0.0355898085130093
MVIANSGVLT	10	Unmodified	_MVIANSGVLT_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.8005676269531	2	502.775885	1003.53722	-0.96371	-0.00048453	0.18177	9.139E-05	-0.78194	-0.00039314	502.7762349199757	46.533	0.56347	46.38	46.135	46.698	-0.15301					28	15	2	0	0	0	0.03519	1	4641	4641		60.118	0	1	197230			52658	8661	36711	36771	57974	57974					0.0355898085130093
MVIFLYLE	8	Unmodified	_MVIFLYLE_					0	0	0			REV__ENST00000503335.6_1_5:126626657-126667083:+|nuORF	REV__ENST00000503335.6_1_5:126626657-126667083:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2652587890625	2	514.280272	1026.54599	0.24902	0.00012807	2.4671	0.0012688	2.7161	0.0013969	514.2814555567682	67.246	0.62607	66.998	66.792	67.418	-0.24839					29	14	3	0	0	0	0.027866	1	7710	7710		20.482	4.0087	1	434660	+		52659	32128	36712	36772	57975	57975					0.033779544877461376
MVIGPILFLI	10	Unmodified	_MVIGPILFLI_					0	0	0			REV__ENSG00000163394|ENST00000295589|CCKAR	REV__ENSG00000163394|ENST00000295589|CCKAR	MSMS	OPSCC_39_ClassI_Rep-2	2	558.3499145507812	2	558.348489	1114.68242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.176	1	50.025	49.525	50.525	-0.1512								0	0	0	0.75301	1	5204	5204		44.531	2.1349	1		+		52660	25562	36713	36773	57976	57976					0.1296706871828519
MVIIMVIAL	9	Oxidation (M)	_M(Oxidation (M))VIIMVIAL_		M(0.989)VIIM(0.011)VIAL		M(19)VIIM(-19)VIAL	0	0	1		RHO|p.F261L|1|0.07|ENSG00000163914|chr3:129532619-129532619|C/G|missense_variant	RHO|p.F261L|1|0.07|ENSG00000163914|chr3:129532619-129532619|C/G|missense_variant	RHO|p.F261L|1|0.07|ENSG00000163914|chr3:129532619-129532619|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80352783203125	2	509.805599	1017.59665	0.28678	0.0001462	-4.0318	-0.0020554	-3.745	-0.0019092	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.65391	1	10540	10540		49.211	8.4326	2	3746700			52661	37834	36714	36774	57977	57977		991			0.08855160541111218
MVIIMVIAL	9	Oxidation (M)	_M(Oxidation (M))VIIMVIAL_		M(1)VIIMVIAL		M(35)VIIM(-35)VIAL	0	0	1		RHO|p.F261L|1|0.07|ENSG00000163914|chr3:129532619-129532619|C/G|missense_variant	RHO|p.F261L|1|0.07|ENSG00000163914|chr3:129532619-129532619|C/G|missense_variant	RHO|p.F261L|1|0.07|ENSG00000163914|chr3:129532619-129532619|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.80218505859375	2	509.805599	1017.59665	-0.094427	-4.8139E-05	-4.0591	-0.0020693	-4.1535	-0.0021175	509.8034761035609	83.316	2.5779	83.177	81.744	84.322	-0.1386					164	59	4	0	0	0	0.65391	1	9988	9988		49.211	11.399	2	851420			52662	37834	36714	36774	57978	57978		991			0.08855160541111218
MVIIPTIGGN	10	Unmodified	_MVIIPTIGGN_					0	0	0		HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant;ENSG00000135914|ENST00000258400|HTR2B	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.76763916015625	2	507.786253	1013.55795	-0.75312	-0.00038243	1.9668	0.0009987	1.2136	0.00061627	507.7864488088672	60.875	0.23215	60.946	60.79	61.022	0.071129					8	5	2	0	0	0	0.03519	1	6946	6946		74.255	20.904	1	46090			52663	4949	36715	36775	57979	57979					0.051715712309714945
MVIIPTIGGN	10	Unmodified	_MVIIPTIGGN_					0	0	0		HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant;ENSG00000135914|ENST00000258400|HTR2B	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	HTR2B|p.L250Ffs*22|1|0.11|ENSG00000135914|chr2:231109212-231109213|CT/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.786253	1013.55795	-0.79162	-0.00040198	2.4019	0.0012196	1.6103	0.00081766	507.7867885069638	60.875	0.15125	60.662	60.531	60.682	-0.21339	-0.14207	0.00024169	NaN	69.628	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88524			52664	4949	36715	36775							0.051715712309714945
MVIIRYISR	9	Unmodified	_MVIIRYISR_					0	0	0		nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8431396484375	2	575.841894	1149.66923	-0.59889	-0.00034487	2.4619	0.0014177	1.8631	0.0010728	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.89441	1	11003	11003		32.812	1.2826	1	2151700			52665	1421	36716	36776	57980	57980					0.10038630658891634
MVIKNWFS	8	Unmodified	_MVIKNWFS_					0	0	0			REV__ENST00000409612.5_1_2:131865137-131865215:+|nuORF	REV__ENST00000409612.5_1_2:131865137-131865215:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2874145507812	2	512.767863	1023.52117	0.29602	0.00015179	3.1894	0.0016354	3.4855	0.0017872	513.2688621706332	95.918	0.75232	95.92	95.481	96.233	0.0020676					26	17	2	0	0	0	0.027866	1	12127	12127		40.573	0	1	184480	+		52666	31967	36717	36777	57981	57981					0.010353194050594539
MVIKVDFCADQ	11	Unmodified	_MVIKVDFCADQ_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5547180175781	3	423.538636	1267.59408	2.2483	0.00095225	2.2225	0.00094133	4.4708	0.0018936	423.5408835043959	24.007	0.2241	23.826	23.759	23.983	-0.18089					10	4	3	0	0	0	0.024801	1	981	981		38.714	0	1	77270			52667	7371	36718	36778	57982	57982					-0.02901339654476942
MVILPSPKV	9	Oxidation (M)	_M(Oxidation (M))VILPSPKV_		M(1)VILPSPKV		M(77)VILPSPKV	0	0	1		ENST00000524964.1_1_11:126164366-126174190:-|nuORF	ENST00000524964.1_1_11:126164366-126174190:-|nuORF	ENST00000524964.1_1_11:126164366-126174190:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3011169433594	2	500.298996	998.583439	-0.45741	-0.00022884	3.4424	0.0017222	2.985	0.0014934	500.3005740004996	32.661	0.64093	32.661	32.3	32.941	0					48	16	4	0	0	0	0.29158	1	2292	2292		76.774	13.468	1	7413600			52668	16075	36719	36779	57983	57983		530			0.08409045753410282
MVILQDKE	8	Unmodified	_MVILQDKE_					0	0	0		ENSG00000154511|ENST00000370310|DIPK1A	ENSG00000154511|ENST00000370310|DIPK1A	ENSG00000154511|ENST00000370310|DIPK1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.26318359375	2	488.26261	974.510668	-1.0107	-0.00049349	1.256	0.00061325	0.24527	0.00011976	488.2630493182052	55.35	0.84971	55.204	54.873	55.723	-0.14609					39	23	2	0	0	0	0.027866	1	5971	5971		28.254	5.6746	1	3573800			52669	6416	36720	36780	57984	57984					0.02239291959961065
MVINVSVEV	9	Unmodified	_MVINVSVEV_					0	0	0		ENSG00000167065|ENST00000334679|DUSP18	ENSG00000167065|ENST00000334679|DUSP18	ENSG00000167065|ENST00000334679|DUSP18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2704772949219	2	495.270435	988.526318	0.3829	0.00018964	-1.0862	-0.00053799	-0.70334	-0.00034834	495.2698097064133	77.639	1.3631	77.639	77.295	78.658	0					66	32	3	0	0	0	0.057894	1	9585	9585		125.81	3.638	1	6250800			52670	7643	36721	36781	57985	57985					0.031595784770274804
MVINVSVEV	9	Unmodified	_MVINVSVEV_					0	0	0		ENSG00000167065|ENST00000334679|DUSP18	ENSG00000167065|ENST00000334679|DUSP18	ENSG00000167065|ENST00000334679|DUSP18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2707214355469	2	495.270435	988.526318	-0.32766	-0.00016228	-0.21336	-0.00010567	-0.54102	-0.00026795	495.27021535216016	77.852	2.2446	77.59	77.27	79.514	-0.26202					106	52	3	0	0	0	0.057894	1	9251	9251		125.81	3.638	1	6496300			52671	7643	36721	36781	57986	57986					0.031595784770274804
MVINVSVEV	9	Unmodified	_MVINVSVEV_					0	0	0		ENSG00000167065|ENST00000334679|DUSP18	ENSG00000167065|ENST00000334679|DUSP18	ENSG00000167065|ENST00000334679|DUSP18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2710876464844	2	495.270435	988.526318	0.75773	0.00037528	-1.2254	-0.00060691	-0.46768	-0.00023163	495.2697298626049	77.876	2.0704	77.634	77.276	79.346	-0.24232					95	48	3	0	0	0	0.057894	1	9298	9298		125.81	8.9104	1	6524500			52672	7643	36721	36781	57987	57987					0.031595784770274804
MVITALVKV	9	Unmodified	_MVITALVKV_					0	0	0		nc|ENSG00000198246|Q9BZD2-2|SLC29A3;ENSG00000198246|ENST00000373189|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2818298339844	2	487.309364	972.604174	-1.3329	-0.00064953	-0.50601	-0.00024658	-1.8389	-0.00089611	487.30943559684204	80.667	0.27937	80.69	80.573	80.852	0.023903					9	6	2	0	0	0	0.024021	1	9953	9953		79.451	23.947	1	81471			52673	10112	36722	36782	57988	57988					0.11677636133072156
MVITYGLDQ	9	Unmodified	_MVITYGLDQ_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;ENST00000523028.5_1_16:21892164-21910369:-|nuORF	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8187255859375	2	520.260068	1038.50558	-0.19163	-9.9699E-05	-3.6955	-0.0019226	-3.8871	-0.0020223	520.2578068771134	71.268	0.45897	71.279	71.05	71.509	0.010735					16	11	2	0	0	0	0.024261	1	8564	8564		64.207	12.872	1	109970			52674	6575;12046	36723	36783	57989	57989					-0.012130119026551256
MVKEISIP	8	Unmodified	_MVKEISIP_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.7639465332031	2	458.762246	915.50994	1.8701	0.00085795	1.711	0.00078495	3.5811	0.0016429	458.7630833065857	23.532	1.4686	23.341	22.851	24.319	-0.19117					81	33	4	0	0	0	0.46709	1	904	904		88.643	3.2834	1	8963600			52675	6354	36724	36784	57990	57990					0.04880497310921328
MVKFGELASLF	11	Unmodified	_MVKFGELASLF_					0	0	0			REV__nc|ENSG00000116062|P52701-4|MSH6	REV__nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.5594787597656	3	414.558137	1240.65258	-0.78615	-0.00032591	3.5355	0.0014657	2.7493	0.0011398	414.5595911842021	26.653	1.2873	26.417	26.098	27.385	-0.23603					82	31	4	0	0	0	0.99689	1	1436	1436		37.508	1.1905	1	5855800	+		52676	22255	36725	36785	57991	57991					0.04188084982297369
MVKGVVDH	8	Unmodified	_MVKGVVDH_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.7348937988281	2	442.736563	883.458573	0.051574	2.2834E-05	-3.7811	-0.001674	-3.7296	-0.0016512	442.734834374609	23.462	1.2635	23.26	22.967	24.231	-0.20193					77	28	4	0	0	0	0.88442	2	928	928;942		52.299	2.2746	1	4046600			52677	7278	36726	36786	57992;57993	57992					0.012181733368720415
MVKGVVDH	8	Unmodified	_MVKGVVDH_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.73516845703125	2	442.736563	883.458573	-0.36527	-0.00016172	-3.4632	-0.0015333	-3.8284	-0.001695	442.73503775671423	23.477	1.4062	23.297	22.929	24.335	-0.17989					73	32	3	0	0	0	0.88442	3	909	909;921;958		52.299	7.7681	1	7343900			52678	7278	36726	36786	57994;57995;57996	57994					0.012181733368720415
MVKKKLQEM	9	Oxidation (M)	_MVKKKLQEM(Oxidation (M))_		MVKKKLQEM(1)		M(-81)VKKKLQEM(81)	0	0	1		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8193359375	2	575.81977	1149.62499	0.61871	0.00035626	-0.32093	-0.0001848	0.29778	0.00017147	575.8191497956648	18.81	0.84176	18.654	18.346	19.188	-0.15637					44	16	4	0	0	0	0.2508	1	349	349		82.241	31.048	2	141640			52679	1335	36727	36787	57997	57997		40			0.056158584503918973
MVKKKLQEM	9	Oxidation (M)	_MVKKKLQEM(Oxidation (M))_		MVKKKLQEM(1)		M(-81)VKKKLQEM(81)	0	0	1		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.81982421875	2	575.81977	1149.62499	0.16567	9.5395E-05	-0.25763	-0.00014835	-0.091967	-5.2956E-05	575.819423550431	18.871	0.94044	18.668	18.361	19.302	-0.20371					38	18	3	0	0	0	0.2508	1	354	354		82.241	27.464	2	132740			52680	1335	36727	36787	57998	57998		40			0.056158584503918973
MVKKKLQEM	9	Oxidation (M)	_MVKKKLQEM(Oxidation (M))_					0	0	1		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	575.81977	1149.62499	2.0708	0.0011924	-1.5907	-0.00091597	0.48008	0.00027644	575.8183623384851	18.943	0.79246	18.71	18.383	19.176	-0.23345	0.032875	-0.0011787	NaN	82.241	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107420			52681	1335	36727	36787				40			0.056158584503918973
MVKKKVVF	8	Unmodified	_MVKKKVVF_					0	0	0		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.81195068359375	2	489.812073	977.609594	-1.0168	-0.00049804	0.46115	0.00022588	-0.55564	-0.00027216	489.81221328036156	25.851	1.3223	25.615	25.385	26.707	-0.23603					65	34	4	0	0	0	0.52467	3	1270	1260;1270;1283		83.287	44.739	1	5041200			52682	5548	36728	36788	57999;58000;58001	58000					0.1198935971552828
MVKKKVVF	8	Unmodified	_MVKKKVVF_					0	0	0		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.8119812011719	2	489.812073	977.609594	-0.10333	-5.061E-05	-0.49933	-0.00024458	-0.60266	-0.00029519	489.8117288651482	25.563	0.704	25.392	25.163	25.867	-0.17078					49	17	4	0	0	0	0.43637	3	1221	1212;1221;1234		92.191	51.618	1	4127000			52683	5548	36728	36788	58002;58003;58004	58003					0.1198935971552828
MVKKKVVF	8	Unmodified	_MVKKKVVF_					0	0	0		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.81207275390625	2	489.812073	977.609594	-0.40187	-0.00019684	-0.12827	-6.2827E-05	-0.53013	-0.00025967	489.81194206588253	25.727	1.3764	25.555	25.324	26.7	-0.17151					65	36	4	0	0	0	0.56067	3	1207	1207;1215;1227		79.939	47.984	1	3662000			52684	5548	36728	36788	58005;58006;58007	58005					0.1198935971552828
MVKKKVVF	8	Oxidation (M)	_M(Oxidation (M))VKKKVVF_		M(1)VKKKVVF		M(83)VKKKVVF	0	0	1		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.80877685546875	2	497.809531	993.604509	-0.34352	-0.00017101	0.60551	0.00030143	0.26198	0.00013042	497.80962802948943	23.305	0.98724	23.125	22.836	23.824	-0.17989					59	22	4	0	0	0	0.52467	1	901	901		83.287	22.993	1	681420			52685	5548	36728	36789	58008	58008		237			0.1074505585291945
MVKKKVVF	8	Oxidation (M)	_M(Oxidation (M))VKKKVVF_		M(1)VKKKVVF		M(110)VKKKVVF	0	0	1		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.80914306640625	2	497.809531	993.604509	1.5115	0.00075246	-1.3954	-0.00069464	0.11615	5.782E-05	497.808678107618	23.34	1.2652	23.149	22.617	23.883	-0.19117					70	28	3	0	0	0	0.34196	2	889	871;889		105.27	28.422	1	859350			52686	5548	36728	36789	58009;58010	58010		237			0.1074505585291945
MVKKKVVF	8	Oxidation (M)	_M(Oxidation (M))VKKKVVF_					0	0	1		ENSG00000142230|ENST00000270225|SAE1;nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1	ENSG00000142230|ENST00000270225|SAE1	ENSG00000142230|ENST00000270225|SAE1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	497.809531	993.604509	0.11188	5.5696E-05	0.10674	5.3136E-05	0.21862	0.00010883	497.80940401642664	23.3	1.2309	23.098	22.826	24.057	-0.20193	-0.025933	0.0005306	NaN	105.27	68	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609750			52687	5548	36728	36789				237			0.1074505585291945
MVKKRAEF	8	Unmodified	_MVKKRAEF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3125915527344	2	504.786587	1007.55862	0.17326	8.7459E-05	1.3628	0.00068793	1.5361	0.00077539	504.7862704396272	21.186	0.58897	20.995	20.735	21.324	-0.19072					30	11	4	0	0	0	0.027866	1	624	624		49.442	21.559	1	88370			52688	9935	36729	36790	58011	58011					0.05514410670673442
MVKKRAEF	8	Unmodified	_MVKKRAEF_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.786587	1007.55862	0.24581	0.00012408	0.74816	0.00037766	0.99397	0.00050174	504.78609478074804	21.073	0.48338	20.895	20.678	21.162	-0.17721	-0.078233	-0.00087389	NaN	58.782	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109120			52689	9935	36729	36790							0.05514410670673442
MVKPHMVKV	9	Unmodified	_MVKPHMVKV_					0	0	0		ENST00000550071.1_1_12:56661074-56663089:+|nuORF;ENST00000551911.5_1_12:56660746-56663089:+|nuORF	ENST00000550071.1_1_12:56661074-56663089:+|nuORF	ENST00000550071.1_1_12:56661074-56663089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.8056640625	2	534.806465	1067.59838	-0.90426	-0.00048361	-0.062234	-3.3283E-05	-0.9665	-0.00051689	534.806391399952	80.366	0.94426	80.366	79.994	80.939	0					44	22	3	0	0	0	0.62163	1	10008	10008		51.335	1.8939	1	1898100			52690	16573	36730	36791	58012	58012					0.06728214349755035
MVKPHMVKV	9	Unmodified	_MVKPHMVKV_					0	0	0		ENST00000550071.1_1_12:56661074-56663089:+|nuORF;ENST00000551911.5_1_12:56660746-56663089:+|nuORF	ENST00000550071.1_1_12:56661074-56663089:+|nuORF	ENST00000550071.1_1_12:56661074-56663089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.8056640625	2	534.806465	1067.59838	-1.2211	-0.00065303	0.24413	0.00013056	-0.97694	-0.00052247	534.8065637949222	80.353	0.94217	80.375	80.063	81.005	0.021446					48	22	3	0	0	0	0.4752	1	9899	9899		60.972	16.595	1	1797000			52691	16573	36730	36791	58013	58013					0.06728214349755035
MVKVHVVDLKA	11	Unmodified	_MVKVHVVDLKA_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8695068359375	2	619.868108	1237.72166	-1.4765	-0.00091525	3.755	0.0023276	2.2785	0.0014124	619.8702701735084	91.638	0.85271	91.489	90.933	91.785	-0.1487					60	19	4	0	0	0	1.0392	1	11261	11261		28.081	0.19925	1	637190			52692	8016	36731	36792	58014	58014					0.11231169001871422
MVKWPHEHSI	10	Unmodified	_MVKWPHEHSI_					0	0	0			REV__ENST00000437188.1_1_2:73597552-73597930:+|nuORF	REV__ENST00000437188.1_1_2:73597552-73597930:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.51324462890625	3	421.881614	1262.62301	-0.52565	-0.00022176	-0.20296	-8.5627E-05	-0.72861	-0.00030739	421.8817725165058	31.71	0.44091	31.71	31.469	31.91	0					18	10	3	0	0	0	0.03519	1	2159	2159		14.694	5.0475	1	69327	+		52693	32473	36732	36793	58015	58015					0.002205657568083552
MVLGTGLRC	9	Unmodified	_MVLGTGLRC_					0	0	0		nc|ENSG00000138463|Q96SL1-2|SLC49A4;ENSG00000138463|ENST00000261038|SLC49A4	nc|ENSG00000138463|Q96SL1-2|SLC49A4	nc|ENSG00000138463|Q96SL1-2|SLC49A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.24951171875	2	475.251523	948.488493	0.44619	0.00021205	-4.1588	-0.0019765	-3.7126	-0.0017644	475.24939433316297	49.652	1.1617	49.5	48.936	50.098	-0.1512					81	31	4	0	0	0	0.52323	1	5103	5103		57.811	3.0466	1	5820500			52694	5247	36733	36794	58016	58016					0.012187890105678889
MVLIAIWK	8	Unmodified	_MVLIAIWK_					0	0	0		ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	ENSG00000213694|ENST00000358157|S1PR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7832946777344	2	487.298799	972.583045	0.39108	0.00019057	2.3371	0.0011389	2.7282	0.0013295	487.29971364046224	32.306	0.39369	32.114	31.899	32.293	-0.19261					12	8	2	0	0	0	0.027866	1	2203	2203		21.702	0	1	46396			52695	10518	36734	36795	58017	58017					0.0956567082419042
MVLLHPGVW	9	Unmodified	_MVLLHPGVW_					0	0	0		ENST00000374358.4_1_1:25664819-25664873:+|nuORF	ENST00000374358.4_1_1:25664819-25664873:+|nuORF	ENST00000374358.4_1_1:25664819-25664873:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7950439453125	2	526.291505	1050.56846	-0.33609	-0.00017688	4.2004	0.0022107	3.8643	0.0020338	526.2925609700261	31.578	0.87158	31.336	31.034	31.906	-0.24109					53	21	5	0	0	0	0.024541	1	2065	2065		8.8223	0	1	862840			52696	13112	36735	36796	58018	58018					0.045195986760745654
MVLLHVLF	8	Unmodified	_MVLLHVLF_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7442321777344	2	486.290974	970.567395	-0.82109	-0.00039929	1.7762	0.00086376	0.95512	0.00046447	486.29168702167703	62.304	0.30677	62.065	61.932	62.239	-0.23926					11	8	2	0	0	0	0.027866	1	7218	7218		24.504	0	1	407410			52697	2316	36736	36797	58019	58019					0.08093384307153428
MVLLLIWP	8	Oxidation (M)	_M(Oxidation (M))VLLLIWP_		M(1)VLLLIWP		M(55)VLLLIWP	0	0	1			REV__ENSG00000180205|ENST00000326000|WFDC9	REV__ENSG00000180205|ENST00000326000|WFDC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.79486083984375	2	500.798632	999.582711	-0.48918	-0.00024498	-2.1985	-0.001101	-2.6877	-0.001346	500.7974435180571	93.308	0.37936	93.304	93.159	93.538	-0.0042038					21	8	4	0	0	0	0.8525	2	11813	11813;11826		54.895	14.116	1	1700400	+		52698	27319	36737	36798	58020;58021	58020		813			0.08290251104335766
MVLLLLWCLV	10	Unmodified	_MVLLLLWCLV_					0	0	0			REV__ENSG00000177202|ENST00000321762|SPACA4	REV__ENSG00000177202|ENST00000321762|SPACA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.8580322265625	2	601.855624	1201.69669	0.053475	3.2184E-05	3.7967	0.002285	3.8501	0.0023172	601.8575176025487	102.33	0.46329	102.21	102.03	102.49	-0.12931					20	10	3	0	0	0	1.1265	1	12714	12714		12.959	0	1	79147	+		52699	27093	36738	36799	58022	58022					0.10391397874900576
MVLLPASLAS	10	Unmodified	_MVLLPASLAS_					0	0	0		nc|ENSG00000293392|Q8IVK1-2|GLYCAM1;nc|ENSG00000293392|Q8IVK1|GLYCAM1	nc|ENSG00000293392|Q8IVK1-2|GLYCAM1	nc|ENSG00000293392|Q8IVK1-2|GLYCAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2911376953125	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	1.0781	1	10599	10599		35.618	1.4457	1	8460100			52700	18844	36739	36800	58023	58023					0.062444553737236674
MVLLPASLAS	10	Unmodified	_MVLLPASLAS_					0	0	0		nc|ENSG00000293392|Q8IVK1-2|GLYCAM1;nc|ENSG00000293392|Q8IVK1|GLYCAM1	nc|ENSG00000293392|Q8IVK1-2|GLYCAM1	nc|ENSG00000293392|Q8IVK1-2|GLYCAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2906494140625	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	1.0781	1	10317	10317		35.618	5.1146	1	10571000			52701	18844	36739	36800	58024	58024					0.062444553737236674
MVLMHVVRA	9	Oxidation (M)	_M(Oxidation (M))VLMHVVRA_		M(0.933)VLM(0.067)HVVRA		M(11)VLM(-11)HVVRA	0	0	1			REV__ENSG00000148734|ENST00000277942|NPFFR1	REV__ENSG00000148734|ENST00000277942|NPFFR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.2944946289062	2	536.293722	1070.57289	-0.11843	-6.3515E-05	3.9985	0.0021444	3.8801	0.0020809	536.2958166286054	74.748	1.4188	74.472	74.001	75.42	-0.27573					75	33	4	0	0	0	0.26797	1	8824	8824		79.939	7.06	2	1294200	+		52702	24633	36740	36801	58025	58025		729			0.04042739827332298
MVLPWHEV	8	Unmodified	_MVLPWHEV_					0	0	0		ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.2525939941406	2	505.760038	1009.50552	-0.64731	-0.00032738	-3.6755	-0.0018589	-4.3228	-0.0021863	505.75787067183774	60.902	1.0482	60.902	60.366	61.414	0					55	27	3	0	0	0	0.027866	1	7106	7106		35.201	0	1	565620			52703	3229	36741	36802	58026	58026					0.0011503288801577582
MVLQLPKTK	9	Unmodified	_MVLQLPKTK_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3;MLH3|p.E234Wfs*6|1|0.11|ENSG00000119684|chr14:75048949-75048956|CTAAGCTC/-|frameshift_variant	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MSMS	OPSCC_39_ClassI_Rep-1	1	529.3270263671875	2	529.325545	1056.63654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.559	1	66.559	66.059	67.059	0								0	0	0	0.57567	1	7922	7922		42.864	0.46813	1				52704	3753	36742	36803	58027	58027					0.11048423536067276
MVLSNTSPQ	9	Unmodified	_MVLSNTSPQ_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2;ENST00000483923.5_1_10:100150731-100167745:-|nuORF	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79296875	2	488.742042	975.469531	-1.0209	-0.00049893	1.1109	0.00054293	0.090023	4.3998E-05	488.742472220113	36.112	0.62498	36.112	35.849	36.474	0					47	17	4	0	0	0	0.024292	1	2843	2843		58.782	18.004	1	2775600			52705	3777	36743	36804	58028	58028					-0.019184690794986636
MVLTATVLN	9	Unmodified	_MVLTATVLN_					0	0	0		ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7311096191406	2	481.272978	960.531403	-0.044285	-2.1313E-05	0.40619	0.00019549	0.36191	0.00017418	481.2731597723489	32.05	0.47423	32.05	31.749	32.224	0					20	11	2	0	0	0	0.024292	1	2178	2178		58.782	16.386	1	179930			52706	8338	36744	36805	58029	58029					0.04955882339618256
MVLTKLKET	9	Unmodified	_MVLTKLKET_					0	0	0		ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8171997070312	2	531.81501	1061.61547	0.30294	0.00016111	2.8637	0.001523	3.1666	0.0016841	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.78823	1	11035	11035		40.058	0.80534	1	3405600			52707	10340	36745	36806	58030	58030					0.08712413436524002
MVLTLPIGLV	10	Unmodified	_MVLTLPIGLV_					0	0	0			REV__ENSG00000169427|ENST00000520439|KCNK9	REV__ENSG00000169427|ENST00000520439|KCNK9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.32861328125	2	528.330296	1054.64604	-0.65171	-0.00034432	-2.6624	-0.0014066	-3.3141	-0.0017509	528.3287531117466	77.648	3.1214	77.648	77.209	80.331	0					219	74	5	0	0	0	0.36026	1	9634	9634		102.77	8.7669	1	9009000	+		52708	26367	36746	36807	58031	58031					0.12090191821562257
MVLVIGTSM	9	Unmodified	_MVLVIGTSM_					0	0	0		AQP3|p.V198M|1|0.12|ENSG00000165272|chr9:33442419-33442419|C/T|missense_variant	AQP3|p.V198M|1|0.12|ENSG00000165272|chr9:33442419-33442419|C/T|missense_variant	AQP3|p.V198M|1|0.12|ENSG00000165272|chr9:33442419-33442419|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.236328125	2	475.756107	949.49766	-0.11104	-5.283E-05	1.0739	0.0005109	0.96282	0.00045807	475.7563649692691	30.106	0.86074	30.115	29.677	30.538	0.0086689					26	20	2	0	0	0	0.024443	1	1834	1834		19.36	1.0356	1	141050			52709	110	36747	36808	58032	58032					0.020891375762403186
MVLVIGTSM	9	Unmodified	_MVLVIGTSM_					0	0	0		AQP3|p.V198M|1|0.12|ENSG00000165272|chr9:33442419-33442419|C/T|missense_variant	AQP3|p.V198M|1|0.12|ENSG00000165272|chr9:33442419-33442419|C/T|missense_variant	AQP3|p.V198M|1|0.12|ENSG00000165272|chr9:33442419-33442419|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.756107	949.49766	-0.76489	-0.0003639	1.8973	0.00090267	1.1324	0.00053877	475.7567561391491	29.814	0.76623	29.893	29.45	30.216	0.078346	-0.14207	0.00036017	NaN	25.45	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132390			52710	110	36747	36808							0.020891375762403186
MVLVLPDSL	9	Unmodified	_MVLVLPDSL_					0	0	0			REV__nc|ENSG00000131042|Q8N423-3|LILRB2	REV__nc|ENSG00000131042|Q8N423-3|LILRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.78497314453125	2	493.783179	985.551804	0.40536	0.00020016	3.1638	0.0015623	3.5692	0.0017624	493.7846959150122	41.377	0.81684	41.377	40.835	41.652	0					51	22	4	0	0	0	0.36105	1	3718	3718		68.485	0.99103	1	3431300	+		52711	23182	36748	36809	58033	58033					0.05845052999438849
MVLVNVLQV	9	Oxidation (M)	_M(Oxidation (M))VLVNVLQV_		M(1)VLVNVLQV		M(130)VLVNVLQV	0	0	1		ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENST00000534701.1_1_11:71149825-71152361:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7625122070312	2	515.801903	1029.58925	-0.39918	-0.0002059	-3.7601	-0.0019395	-4.1593	-0.0021454	515.7995387935723	67.193	0.68121	66.909	66.711	67.392	-0.28373					29	16	2	0	0	0	0.018368	1	8049	8049		128.86	21.854	1	748250			52712	16336	36749	36810	58034	58034		535			0.07564144265074901
MVLVNVLQV	9	Oxidation (M)	_M(Oxidation (M))VLVNVLQV_					0	0	1		ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENST00000534701.1_1_11:71149825-71152361:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.801903	1029.58925	-0.64077	-0.00033051	-3.507	-0.0018089	-4.1478	-0.0021394	515.7995966285156	66.954	0.66062	66.978	66.769	67.43	0.023911	0.074054	0.00032936	NaN	128.86	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506540			52713	16336	36749	36810				535			0.07564144265074901
MVMCRVKV	8	Unmodified	_MVMCRVKV_					0	0	0		ENSG00000115825|ENST00000234179|PRKD3;ENST00000475912.1_1_2:37509613-37518050:-|nuORF;nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF	ENSG00000115825|ENST00000234179|PRKD3	ENSG00000115825|ENST00000234179|PRKD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.6461181640625	2	483.258294	964.502034	-0.48363	-0.00023372	4.2479	0.0020528	3.7642	0.0018191	483.2605848621373	46.802	0.48005	46.854	46.544	47.024	0.051395					14	12	2	0	0	0	0.027866	1	4606	4606		7.6903	0	1	74404			52714	3492	36750	36811	58035	58035					0.018363235181482196
MVMGKRLL	8	Unmodified	_MVMGKRLL_					0	0	0			REV__nc|ENSG00000172432|Q9BX10-2|GTPBP2	REV__nc|ENSG00000172432|Q9BX10-2|GTPBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2698059082031	2	474.280083	946.545614	0.331	0.00015699	0.7445	0.0003531	1.0755	0.00051009	474.2803512894269	25.271	2.156	25.351	25.05	27.206	0.08009					70	52	2	0	0	0	0.027866	1	1153	1153		50.025	0.58299	1	191230	+		52715	26670	36751	36812	58036	58036					0.07020256286944004
MVMIFLKNN	9	Unmodified	_MVMIFLKNN_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3054809570312	2	555.29593	1108.57731	-0.63722	-0.00035385	-1.5548	-0.00086335	-2.192	-0.0012172	555.2952946723065	75.581	0.5446	75.336	75.037	75.581	-0.24455					28	14	3	0	0	0	0.024412	1	9282	9282		24.203	8.5609	1	248360	+		52716	23341	36752	36813	58037	58037					0.027362042502318218
MVMIFLKNN	9	Unmodified	_MVMIFLKNN_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.29593	1108.57731	0.25695	0.00014268	-1.8267	-0.0010144	-1.5698	-0.00087168	555.2948370920212	75.287	0.51708	75.298	75.092	75.609	0.010376	-0.035594	-3.757E-06	NaN	31.955	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227940	+		52717	23341	36752	36813							0.027362042502318218
MVNHFIAE	8	Unmodified	_MVNHFIAE_					0	0	0		ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7317199707031	2	480.73402	959.453487	-0.17875	-8.5931E-05	-4.0102	-0.0019278	-4.1889	-0.0020138	480.7320929835196	31.552	4.2201	31.564	28.598	32.818	0.011797					200	104	3	0	0	0	0.94517	1	2164	2164		45.952	0	1	6976400			52718	3008	36753	36814	58038	58038					-0.02786130525748831
MVNIFIIK	8	Unmodified	_MVNIFIIK_					0	0	0		ENST00000446113.6_1_11:19192027-19194295:+|nuORF	ENST00000446113.6_1_11:19192027-19194295:+|nuORF	ENST00000446113.6_1_11:19192027-19194295:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2930908203125	2	489.296256	976.57796	-0.23888	-0.00011688	-3.9747	-0.0019448	-4.2136	-0.0020617	489.2927836729603	66.745	1.2941	66.745	66.461	67.755	0					86	32	5	0	0	0	0.91239	2	7961	7939;7961		50.025	7.6284	1	3575400			52719	14449	36754	36815	58039;58040	58040					0.08873366961586271
MVNKLAEGAE	10	Unmodified	_MVNKLAEGAE_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2881469726562	2	531.268424	1060.5223	-1.0132	-0.00053831	-1.2445	-0.00066119	-2.2578	-0.0011995	531.2686638793309	45.778	0.20305	45.626	45.48	45.683	-0.15156					9	5	3	0	0	0	0.03519	1	4433	4433		58.23	1.5089	1	196440			52720	9337	36755	36816	58041	58041					-0.005545110167076928
MVNRIWQN	8	Unmodified	_MVNRIWQN_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8077392578125	2	530.771468	1059.52838	0.18914	0.00010039	-2.0301	-0.0010775	-1.8409	-0.00097711	530.7705438539346	71.709	0.5746	71.42	71.113	71.688	-0.28858					18	14	2	0	0	0	0.027866	1	8693	8693		33.516	0	1	152360			52721	18641	36756	36817	58042	58042					0.0010005200549585425
MVPALVGW	8	Unmodified	_MVPALVGW_					0	0	0			REV__ENST00000318562.12_2_11:727281-727653:+|nuORF	REV__ENST00000318562.12_2_11:727281-727653:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.7403259277344	2	436.738574	871.462595	0.1546	6.7519E-05	4.4005	0.0019219	4.5551	0.0019894	436.740338859129	45.053	0.65343	45.096	44.79	45.444	0.043877					47	18	3	0	0	0	0.69959	1	4286	4286		67.327	19.67	1	2419500	+		52722	30311	36757	36818	58043	58043					0.02172262830595173
MVPDKIKG	8	Unmodified	_MVPDKIKG_					0	0	0			REV__ENST00000561252.1_1_15:90768241-90768761:+|nuORF	REV__ENST00000561252.1_1_15:90768241-90768761:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2277526855469	2	444.254588	886.494624	-0.59439	-0.00026406	-2.7136	-0.0012055	-3.308	-0.0014696	444.25083700845914	26.506	0.18528	26.343	26.234	26.419	-0.16331					7	4	2	0	0	0	0.027866	1	1338	1338		30.504	0	1	22131	+		52723	35169	36758	36819	58044	58044					0.0468363051373899
MVPRLTAVL	9	Unmodified	_MVPRLTAVL_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.80596923828125	2	500.304613	998.594672	-0.62494	-0.00031266	-0.68092	-0.00034067	-1.3059	-0.00065333	500.80550597038047	59.82	0.85738	59.899	59.572	60.429	0.078888					78	22	5	0	0	0	0.84115	1	6748	6748		36.447	4.4919	1	18276000			52724	4213	36759	36820	58045	58045					0.09531867847545072
MVPVALPPAAV	11	Unmodified	_MVPVALPPAAV_					0	0	0		ENSG00000078902|ENST00000317204|TOLLIP;nc|ENSG00000078902|Q9H0E2-2|TOLLIP	ENSG00000078902|ENST00000317204|TOLLIP	ENSG00000078902|ENST00000317204|TOLLIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7809448242188	2	532.81227	1063.60999	-0.26613	-0.0001418	-2.8295	-0.0015076	-3.0956	-0.0016494	532.8109700220153	57.424	0.21904	57.222	57.064	57.283	-0.20208					6	5	2	0	0	0	0.024249	1	6258	6258		40.573	17.53	1	280980			52725	1649	36760	36821	58046	58046					0.08072734644701995
MVPVFVVLLG	10	Unmodified	_MVPVFVVLLG_					0	0	0		nc|ENSG00000168591|Q71RG4-2|TMUB2;ENSG00000168591|ENST00000538716|TMUB2;ENST00000589184.5_1_17:42266304-42268229:+|nuORF	nc|ENSG00000168591|Q71RG4-2|TMUB2	nc|ENSG00000168591|Q71RG4-2|TMUB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3493041992188	2	537.325014	1072.63547	-0.6473	-0.00034781	-3.9105	-0.0021012	-4.5578	-0.002449	537.3227638187377	87.483	0.79803	87.345	86.704	87.502	-0.13734					22	18	2	0	0	0	0.03519	1	10648	10648		26.796	7.4361	1	33853			52726	7842	36761	36822	58047	58047					0.10206209167154157
MVPVQLVNV	9	Unmodified	_MVPVQLVNV_					0	0	0			REV__ENST00000534701.1_1_11:71149825-71152361:-|nuORF	REV__ENST00000534701.1_1_11:71149825-71152361:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7881774902344	2	499.788795	997.563038	0.64999	0.00032486	-0.42964	-0.00021473	0.22035	0.00011013	499.7884739232706	71.468	1.288	71.179	70.844	72.132	-0.28858					75	33	4	0	0	0	0.17455	1	8639	8639		94.006	31.028	1	3347400	+		52727	34650	36762	36823	58048	58048					0.06415875093603063
MVPWPAPG	8	Unmodified	_MVPWPAPG_					0	0	0		ENST00000253063.3_1_1:28598287-28598828:+|nuORF	ENST00000253063.3_1_1:28598287-28598828:+|nuORF	ENST00000253063.3_1_1:28598287-28598828:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.248291015625	2	427.715099	853.415645	1.2953	0.00055402	1.534	0.0006561	2.8293	0.0012101	427.7179023866122	22.841	0.2786	22.641	22.517	22.795	-0.19986					8	5	2	0	0	0	0.027866	1	838	838		33.493	17.851	1	8347.6			52728	11366	36763	36824	58049	58049					-0.01692596720556594
MVQKITLDC	9	Unmodified	_MVQKITLDC_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7594604492188	2	525.769745	1049.52494	-0.85887	-0.00045157	0.7806	0.00041042	-0.078263	-4.1149E-05	525.7699281776254	57.41	0.6147	57.242	57.071	57.686	-0.1672					40	15	3	0	0	0	0.023655	1	6252	6252		79.713	26.776	1	1133900			52729	3841	36764	36825	58050	58050					0.0021562111660387018
MVQKITLDC	9	Unmodified	_MVQKITLDC_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.769745	1049.52494	-0.9218	-0.00048465	2.3996	0.0012616	1.4778	0.00077698	525.7702109254383	57.221	0.49341	57.221	57.003	57.496	0	-0.052054	0.0019398	NaN	79.713	42	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772790			52730	3841	36764	36825							0.0021562111660387018
MVQKITLDC	9	Unmodified	_MVQKITLDC_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.769745	1049.52494	0.23485	0.00012348	0.55893	0.00029387	0.79378	0.00041734	525.7696902061541	57.466	0.60744	57.292	56.964	57.571	-0.1749	0.018371	4.2579E-06	NaN	79.713	31	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686330			52731	3841	36764	36825							0.0021562111660387018
MVQKITLDC	9	Unmodified	_MVQKITLDC_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.769745	1049.52494	-0.19911	-0.00010468	0.57226	0.00030088	0.37316	0.00019619	525.7698242349967	57.169	0.48733	57.264	56.978	57.465	0.095306	-0.0088687	1.8277E-05	NaN	79.713	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706790			52732	3841	36764	36825							0.0021562111660387018
MVQQPAGPQV	10	Unmodified	_MVQQPAGPQV_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MSMS	OPSCC_39_ClassI_Rep-1	1	527.7695922851562	2	527.771134	1053.52771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.385	1	53.385	52.885	53.885	0								0	0	0	0.22706	1	5771	5771		84.916	2.675	1		+		52733	26587	36765	36826	58051	58051					0.0030921256577585154
MVQRYSEEF	9	Unmodified	_MVQRYSEEF_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	594.7686767578125	2	594.771331	1187.52811	-1.4333	-0.00085247	-3.9362	-0.0023411	-5.3695	-0.0031936	594.7688894778274	49.067	0.84711	49.141	48.807	49.654	0.074192					62	22	4	0	0	0	0.50848	1	4982	4982		58.782	4.0056	1	3172400	+		52734	21768	36766	36827	58052	58052					-0.05815412505035056
MVRGDSVVL	9	Oxidation (M)	_M(Oxidation (M))VRGDSVVL_		M(1)VRGDSVVL		M(61)VRGDSVVL	0	0	1			REV__ENSG00000120008|ENST00000263461|WDR11	REV__ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2662048339844	2	496.265684	990.516816	-0.46455	-0.00023054	0.11488	5.7009E-05	-0.34967	-0.00017353	496.2658299678965	34.915	0.79742	34.966	34.329	35.127	0.050255					33	20	2	0	0	0	0.4752	1	2584	2584		60.972	6.2073	1	6521900	+		52735	22507	36767	36828	58053	58053		665			0.021178101915097614
MVRSKLPN	8	Unmodified	_MVRSKLPN_					0	0	0		ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.29541015625	2	472.770937	943.527321	-1.2282	-0.00058065	1.0236	0.00048394	-0.20454	-9.6701E-05	472.7713729001238	41.047	0.52123	40.817	40.52	41.041	-0.23029					20	13	2	0	0	0	0.027866	1	3541	3541		44.117	0	1	200540			52736	911	36768	36829	58054	58054					0.053298376365887634
MVRSRHLRKLW	11	Unmodified	_MVRSRHLRKLW_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.28729248046875	3	494.62599	1480.85614	1.1319	0.00055987	-2.3996	-0.0011869	-1.2677	-0.00062702	494.62484191519746	51.46	0.30985	51.276	51.14	51.449	-0.18404					12	7	2	0	0	0	0.024856	1	5277	5277		9.2118	0	1	148130			52737	9199	36769	36830	58055	58055					0.13494667267127625
MVSDLVIIL	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))VSDLVIIL_		M(1)VSDLVIIL		M(80)VSDLVIIL	1	0	1		nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1	nc|ENSG00000035115|Q96HL8-4|SH3YL1	nc|ENSG00000035115|Q96HL8-4|SH3YL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8014526367188	2	530.801568	1059.58858	-0.041967	-2.2276E-05	0.037899	2.0117E-05	-0.0040676	-2.1591E-06	530.8014096275714	101.08	0.966	100.96	100.71	101.68	-0.12576					52	22	3	0	0	0	0.26797	1	12594	12594		79.939	8.5613	1	1241600			52738	18042	36770	36831	58056	58056		563			0.06117304825352221
MVSEGIILL	9	Oxidation (M)	_M(Oxidation (M))VSEGIILL_		M(1)VSEGIILL		M(74)VSEGIILL	0	0	1		MCM3|p.F806L|1|0.25|ENSG00000112118|chr6:52264597-52264597|G/T|missense_variant	MCM3|p.F806L|1|0.25|ENSG00000112118|chr6:52264597-52264597|G/T|missense_variant	MCM3|p.F806L|1|0.25|ENSG00000112118|chr6:52264597-52264597|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.7802734375	2	495.780636	989.546719	0.3343	0.00016574	-0.66705	-0.00033071	-0.33275	-0.00016497	495.7801626933624	89.255	0.96286	89.271	88.88	89.843	0.015907					60	22	4	0	0	0	0.31247	1	11179	11179		73.975	16.163	1	2058500			52739	17956	36771	36832	58057	58057		562			0.051527491368574374
MVSEMEKSL	9	Unmodified	_MVSEMEKSL_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.3145751953125	2	527.251385	1052.48822	0.35067	0.00018489	-0.96267	-0.00050757	-0.612	-0.00032268	527.2510660341416	75.183	0.382	75.007	74.689	75.071	-0.17548					12	8	2	0	0	0	0.024541	1	8834	8834		10.866	0	1	35643	+		52740	24328	36772	36833	58058	58058					-0.03592675499953657
MVSGGGCALNF	11	Unmodified	_MVSGGGCALNF_					0	0	0		ENST00000469940.5_1_6:32148922-32149321:-|nuORF	ENST00000469940.5_1_6:32148922-32149321:-|nuORF	ENST00000469940.5_1_6:32148922-32149321:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2830200195312	2	528.23607	1054.45759	-0.33976	-0.00017947	-3.8902	-0.0020549	-4.2299	-0.0022344	528.2339891110188	23.243	0.79556	23.319	23.07	23.866	0.076241					30	18	2	0	0	0	0.024752	1	865	865		40.778	15.328	1	77131			52741	14921	36773	36834	58059	58059					-0.06746409094353112
MVSILIAIP	9	Unmodified	_MVSILIAIP_					0	0	0		ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7435607910156	2	478.796089	955.577625	-0.31077	-0.0001488	-1.2151	-0.00058177	-1.5258	-0.00073056	478.7973389360079	29.998	0.28419	30.007	29.839	30.123	0.0086708					9	6	2	0	0	0	0.022127	1	1880	1880		79.939	0	1	43591			52742	2304	36774	36835	58060	58060					0.09805947241727608
MVSLFLVF	8	Unmodified	_MVSLFLVF_					0	0	0		ENSG00000105605|ENST00000391767|CACNG7	ENSG00000105605|ENST00000391767|CACNG7	ENSG00000105605|ENST00000391767|CACNG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.2694091796875	2	478.269707	954.524861	0.33894	0.00016211	-0.20496	-9.8027E-05	0.13398	6.4078E-05	478.2696034191027	101.26	0.56543	101.14	100.85	101.42	-0.12576					28	12	3	0	0	0	1.0572	1	12583	12583		28.254	1.4582	1	407440			52743	2696	36775	36836	58061	58061					0.045779891789152316
MVSLLVVLI	9	Unmodified	_MVSLLVVLI_					0	0	0			REV__nc|ENSG00000259207|P05106-2|ITGB3	REV__nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2589111328125	2	493.819564	985.624575	0.13024	6.4317E-05	3.4969	0.0017268	3.6271	0.0017911	493.82113382791755	41.34	0.78213	41.217	40.98	41.762	-0.12317					29	21	2	0	0	0	0.023775	1	3772	3772		57.811	7.7867	1	192140	+		52744	29103	36776	36837	58062	58062					0.13118806792886062
MVSLPSRIL	9	Unmodified	_MVSLPSRIL_					0	0	0		ENST00000555754.1_1_9:34648876-34650443:+|nuORF	ENST00000555754.1_1_9:34648876-34650443:+|nuORF	ENST00000555754.1_1_9:34648876-34650443:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3019714355469	2	508.30207	1014.58959	-0.35052	-0.00017817	0.19073	9.6946E-05	-0.15979	-8.1223E-05	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.26966	1	6194	6194		79.713	5.4575	1	8370900			52745	16689	36777	36838	58063	58063					0.08287563984913504
MVSNKKMDW	9	Oxidation (M)	_MVSNKKM(Oxidation (M))DW_		MVSNKKM(1)DW		M(-71)VSNKKM(71)DW	0	0	1		ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.7703857421875	2	577.770277	1153.526	0.063227	3.6531E-05	-1.0415	-0.00060172	-0.97823	-0.00056519	577.7699631171276	51.784	1.3205	51.665	51.319	52.64	-0.11875					90	34	4	0	0	0	0.2508	2	5327	5327;5368		82.241	13.454	2	22463000			52746	7400	36778	36839	58064;58065	58064		308			-0.04462164514507094
MVSNKKMDW	9	Oxidation (M)	_MVSNKKM(Oxidation (M))DW_		MVSNKKM(1)DW		M(-72)VSNKKM(72)DW	0	0	1		ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.7706298828125	2	577.770277	1153.526	0.1292	7.4645E-05	-1.9327	-0.0011167	-1.8035	-0.001042	577.7697100690976	51.867	1.8024	51.683	51.337	53.139	-0.18404					139	46	7	0	0	0	0.20967	1	5367	5367		87.754	8.3033	2	23481000			52747	7400	36778	36839	58066	58066		308			-0.04462164514507094
MVTCPNRPLVP	11	Unmodified	_MVTCPNRPLVP_					0	0	0		nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5501708984375	3	409.550988	1225.63113	0.85681	0.00035091	-3.6205	-0.0014828	-2.7636	-0.0011319	409.54949090781156	52.989	2.3405	53.085	52.606	54.946	0.095669					131	65	4	0	0	0	0.95317	1	5620	5620		47.228	2.8505	1	9425400			52748	18746	36779	36840	58067	58067					0.02734376681928552
MVTCPNRPLVP	11	Unmodified	_MVTCPNRPLVP_					0	0	0		nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.54998779296875	3	409.550988	1225.63113	0.59017	0.0002417	-3.346	-0.0013704	-2.7558	-0.0011286	409.5495738657949	53.353	0.6869	53.095	52.683	53.37	-0.25838					68	17	5	0	0	0	1.0022	1	5555	5555		36.318	0	1	4505800			52749	18746	36779	36840	58068	58068					0.02734376681928552
MVTIEGAGV	9	Unmodified	_MVTIEGAGV_					0	0	0		YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7386474609375	2	438.728403	875.442254	0.38859	0.00017048	-0.67622	-0.00029668	-0.28763	-0.00012619	438.7281056595656	61.388	0.53805	61.459	61.276	61.814	0.071129					29	13	4	0	0	0	0.024183	1	7037	7037		40.573	17.53	1	309650			52750	38165	36780	36841	58069	58069					-0.000449526198735839
MVTLLPRAS	9	Unmodified	_MVTLLPRAS_					0	0	0		sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2850036621094	2	494.28642	986.558287	-0.98477	-0.00048676	0.78627	0.00038864	-0.1985	-9.8116E-05	494.2866758435766	51.329	1.1575	51.416	51.077	52.235	0.087006					94	31	4	0	0	0	0.42604	1	5414	5414		64.207	4.089	1	4096900			52751	37950	36781	36842	58070	58070					0.0644699095081478
MVTPIGKLI	9	Oxidation (M)	_M(Oxidation (M))VTPIGKLI_		M(1)VTPIGKLI		M(63)VTPIGKLI	0	0	1		ENST00000589450.5_1_18:53745418-53763461:+|nuORF	ENST00000589450.5_1_18:53745418-53763461:+|nuORF	ENST00000589450.5_1_18:53745418-53763461:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.3008728027344	2	494.298996	986.583439	-0.25602	-0.00012655	3.693	0.0018255	3.437	0.0016989	494.30075389334326	96.309	2.5046	96.153	95.62	98.125	-0.15646					207	58	7	0	0	0	0.43973	1	11959	11959		63.306	15.391	1	35328000			52752	17310	36782	36843	58071	58071		551			0.08961045753403596
MVVAGQGGQGG	11	Unmodified	_MVVAGQGGQGG_					0	0	0			REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7307434082031	2	480.732009	959.449465	-0.13761	-6.6153E-05	0.29811	0.00014331	0.1605	7.7158E-05	480.7321315524798	31.624	6.3562	31.624	29.773	36.129	0					309	163	4	0	0	0	0.782	2	2155	2155;2178		58.782	2.0609	1	7088900	+		52753	33026	36783	36844	58072;58073	58072					-0.031882200194331745
MVVAGQGGQGG	11	Unmodified	_MVVAGQGGQGG_					0	0	0			REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7312316894531	2	480.732009	959.449465	-0.17875	-8.5931E-05	0.17378	8.3541E-05	-0.0049713	-2.3899E-06	480.7320929835196	31.552	4.2201	31.564	28.598	32.818	0.011797					200	104	3	0	0	0	0.782	1	2084	2084		58.782	2.0609	1	6976400	+		52754	33026	36783	36844	58074	58074					-0.031882200194331745
MVVALVES	8	Unmodified	_MVVALVES_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.1950988769531	2	424.233322	846.45209	0.97082	0.00041186	2.3016	0.0009764	3.2724	0.0013883	424.2338303854133	22.753	0.50671	22.551	22.24	22.747	-0.20199					15	10	3	0	0	0	0.027866	1	816	816		20.482	1.1219	1	27688	+		52755	22840	36784	36845	58075	58075					0.022722353854987887
MVVEERCVY	9	Unmodified	_MVVEERCVY_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126964989-126965184:+|nuORF;ENST00000511309.5_1_5:176730986-176733129:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.732177734375	2	564.264827	1126.5151	0.75548	0.00042629	-4.325	-0.0024405	-3.5695	-0.0020142	564.7637099897445	51.133	0.69275	50.952	50.685	51.378	-0.18071					42	17	3	0	0	0	0.024506	1	5293	5293		38.806	8.3025	1	554230			52756	18498	36785	36846	58076	58076					-0.04309566888764493
MVVIVTIQI	9	Oxidation (M)	_M(Oxidation (M))VVIVTIQI_		M(1)VVIVTIQI		M(59)VVIVTIQI	0	0	1		nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-3|RBMX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.313720703125	2	516.312103	1030.60965	0.29486	0.00015224	2.9401	0.001518	3.2349	0.0016702	516.3135620168821	97.895	2.6352	97.906	97.149	99.785	0.010239					201	60	6	0	0	0	0.50848	1	12539	12539		58.782	12.83	1	30092000			52757	18363	36786	36847	58077	58077		574			0.09557314924882121
MVVMKVCLM	9	Unmodified	_MVVMKVCLM_					0	0	0			REV__ENSG00000165202|ENST00000297913|OR1Q1	REV__ENSG00000165202|ENST00000297913|OR1Q1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.3150634765625	2	527.270012	1052.52547	-0.34264	-0.00018066	-0.65071	-0.0003431	-0.99335	-0.00052376	527.2689832344482	74.704	0.75272	74.714	74.181	74.934	0.010376					44	17	4	0	0	0	0.024325	1	9057	9057		40.573	15.122	1	161810	+		52758	25857	36787	36848	58078	58078					0.0013100124044740369
MVVPPDKVN	9	Unmodified	_MVVPPDKVN_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;nc|ENSG00000179532|Q96M86-5|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7705078125	2	499.770603	997.526652	-0.40998	-0.00020489	0.87208	0.00043584	0.4621	0.00023094	499.77090805100687	65.6	1.2041	65.327	65.017	66.221	-0.27283					93	32	4	0	0	0	0.52323	1	7771	7771		57.811	2.3071	1	10582000			52759	8901	36788	36849	58079	58079					0.027789981968794564
MVVRGDQTCAM	11	Unmodified	_MVVRGDQTCAM_					0	0	0		ENSG00000091622|ENST00000262483|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3;nc|ENSG00000091622|Q9BZ71-2|PITPNM3	ENSG00000091622|ENST00000262483|PITPNM3	ENSG00000091622|ENST00000262483|PITPNM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.7744750976562	2	605.772493	1209.53043	-1.1142	-0.00067493	3.4258	0.0020753	2.3116	0.0014003	605.774633816189	69.292	2.1726	69.292	67.908	70.081	0					162	56	7	0	0	0	0.67171	1	8389	8389		65.465	0	1	2591400			52760	1966	36789	36850	58080	58080					-0.06595023363229302
MVVRRRKS	8	Unmodified	_MVVRRRKS_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2507934570312	2	516.316377	1030.6182	0.76724	0.00039614	-3.5503	-0.0018331	-2.783	-0.0014369	516.3153641657751	36.073	0.35043	35.874	35.742	36.093	-0.19829					13	9	2	0	0	0	0.027866	1	2785	2785		12.959	0	1	137280			52761	6186	36790	36851	58081	58081					0.10411726404709043
MVVVGKPIF	9	Unmodified	_MVVVGKPIF_					0	0	0			REV__ENSG00000160870|ENST00000336374|CYP3A7	REV__ENSG00000160870|ENST00000336374|CYP3A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.32293701171875	2	495.296256	988.57796	-0.80094	-0.0003967	-4.1816	-0.0020712	-4.9826	-0.0024679	495.29400878447404	64.467	0.53002	64.204	64.083	64.613	-0.2626					20	13	2	0	0	0	0.024325	1	7616	7616		50.025	0.81375	1	211410	+		52762	25355	36791	36852	58082	58082					0.0832136696157022
MVVVITGVIA	10	Unmodified	_MVVVITGVIA_					0	0	0			REV__OR10A2|p.L192V|1|0.17|ENSG00000170790|chr11:6870328-6870328|C/G|missense_variant	REV__OR10A2|p.L192V|1|0.17|ENSG00000170790|chr11:6870328-6870328|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.3088684082031	2	501.306821	1000.59909	-0.47453	-0.00023788	3.692	0.0018508	3.2175	0.001613	501.3086477298238	32.033	0.63033	32.045	31.782	32.413	0.011799					44	15	4	0	0	0	0.65054	1	2175	2175		71.296	5.4925	1	3571000	+		52763	37306	36792	36853	58083	58083					0.09881332270447274
MVVVRLSPV	9	Unmodified	_MVVVRLSPV_					0	0	0		ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3040466308594	2	500.304613	998.594672	-0.38424	-0.00019223	-1.0343	-0.00051748	-1.4186	-0.00070971	500.80533676812075	60.105	1.386	59.905	59.577	60.963	-0.20016					97	36	6	0	0	0	0.59099	3	6901	6847;6868;6901		53.351	8.8199	1	21076000			52764	14370	36793	36854	58084;58085;58086	58086					0.09531867847533704
MVVVRLSPV	9	Unmodified	_MVVVRLSPV_					0	0	0		ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.8055419921875	2	500.304613	998.594672	-0.62494	-0.00031266	-0.68092	-0.00034067	-1.3059	-0.00065333	500.80550597038047	59.82	0.85738	59.899	59.572	60.429	0.078888					78	22	5	0	0	0	0.80003	1	6770	6770		39.253	5.7372	1	18276000			52765	14370	36793	36854	58087	58087					0.09531867847533704
MVVWSHDS	8	Unmodified	_MVVWSHDS_					0	0	0			REV__ENSG00000109689|ENST00000467087|STIM2	REV__ENSG00000109689|ENST00000467087|STIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7312316894531	2	480.715827	959.417102	-0.1245	-5.985E-05	2.0368	0.00097914	1.9123	0.00091929	480.71831209994474	31.552	0.35877	31.564	31.424	31.782	0.011797					12	8	2	0	0	0	0.027866	1	2084	2084		71.378	32.572	1	42141	+		52766	21810	36794	36855	58088	58088					-0.064230074224497
MVWEQGIAIIA	11	Unmodified	_MVWEQGIAIIA_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.8297119140625	2	615.831191	1229.64783	-0.40431	-0.00024899	-2.3535	-0.0014494	-2.7578	-0.0016984	615.8296077840357	98.635	1.3876	98.635	98.317	99.704	0					78	31	3	0	0	0	0.90172	2	12622	12598;12622		51.528	2.9262	1	905310			52767	1436	36795	36856	58089;58090	58090					0.04219200839543191
MVWLLGIR	8	Unmodified	_MVWLLGIR_					0	0	0			REV__ENSG00000212124|ENST00000390673|TAS2R19	REV__ENSG00000212124|ENST00000390673|TAS2R19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.75018310546875	2	494.294048	986.573543	-0.13356	-6.6016E-05	1.9944	0.0009858	1.8608	0.00091978	494.29501468377896	45.888	0.68948	45.626	45.317	46.006	-0.26118					55	18	4	0	0	0	0.027866	1	4390	4390		35.201	9.6267	1	2821400	+		52768	28716	36796	36857	58091	58091					0.07971902538679387
MVWVDASF	8	Unmodified	_MVWVDASF_					0	0	0			REV__ENSG00000273079|ENST00000609686|GRIN2B	REV__ENSG00000273079|ENST00000609686|GRIN2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7768859863281	2	477.723121	953.431689	-0.10285	-4.9134E-05	-1.0616	-0.00050713	-1.1644	-0.00055626	477.7229592950894	27.824	0.23718	27.82	27.692	27.929	-0.0042019					7	5	2	0	0	0	0.027866	1	1553	1553		33.516	5.2613	1	41185	+		52769	29173	36797	36858	58092	58092					-0.046889352743164636
MVYIGKRSL	9	Unmodified	_MVYIGKRSL_					0	0	0			REV__ENSG00000130559|ENST00000389532|CAMSAP1	REV__ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8051147460938	2	533.807519	1065.60049	-0.62298	-0.00033255	-3.5326	-0.0018857	-4.1556	-0.0022183	533.80569556097	44.942	0.99356	44.986	44.654	45.647	0.043877					116	28	5	0	0	0	0.72494	1	4294	4294		44.377	0.26039	1	50938000	+		52770	23126	36798	36859	58093	58093					0.07030966359207014
MVYILHLVAA	10	Unmodified	_MVYILHLVAA_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2888793945312	2	565.325545	1128.63654	0.27416	0.00015499	3.0118	0.0017027	3.286	0.0018576	565.3271308183647	72.532	0.38531	72.267	72.042	72.428	-0.26479					13	8	3	0	0	0	0.03519	1	8486	8486		26.796	5.1104	1	72814			52771	10369	36799	36860	58094	58094					0.07736423536084658
MVYILHLVAA	10	Unmodified	_MVYILHLVAA_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.325545	1128.63654	-0.056275	-3.1814E-05	3.7077	0.0020961	3.6514	0.0020642	565.3277707755723	72.606	0.42554	72.329	72.028	72.454	-0.2769	0.031172	0.0002648	NaN	26.796	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48920			52772	10369	36799	36860							0.07736423536084658
MWFYKLIKRWW	11	Unmodified	_MWFYKLIKRWW_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2249145507812	3	552.967242	1655.8799	-0.4913	-0.00027167	-4.0588	-0.0022444	-4.5501	-0.0025161	553.2991727957389	30.938	0.38091	30.697	30.453	30.834	-0.24109					15	8	3	0	0	0	0.024904	1	2030	2030		1.4188	1.4188	1	117800	+		52773	24979	36800	36861	58095	58095					0.07819087980919903
MWFYKLIKRWW	11	Unmodified	_MWFYKLIKRWW_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.2254028320312	3	552.967242	1655.8799	-0.56114	-0.00031029	-3.7156	-0.0020546	-4.2767	-0.0023649	553.2995089757331	30.866	0.33403	30.688	30.497	30.831	-0.17818					12	7	2	0	0	0	0.024904	1	2003	2003		0.37141	0.37141	1	90030	+		52774	24979	36800	36861	58096	58096					0.07819087980919903
MWGDDIQQV	9	Unmodified	_MWGDDIQQV_					0	0	0			REV__ENSG00000002834|ENST00000318008|LASP1	REV__ENSG00000002834|ENST00000318008|LASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.76513671875	2	546.244949	1090.47534	-0.43341	-0.00023675	4.1502	0.002267	3.7168	0.0020303	546.2466964238022	68.124	0.92543	68.143	67.466	68.391	0.018913					36	23	3	0	0	0	0.024319	1	7995	7995		56.721	5.3856	1	866500	+		52775	19767	36801	36862	58097	58097					-0.06627370567844082
MWILALSL	8	Unmodified	_MWILALSL_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.77606201171875	2	473.775157	945.53576	0.76702	0.00036339	0.68996	0.00032689	1.457	0.00069028	473.7757202043876	98.424	0.94422	98.434	98.19	99.135	0.010231					42	21	4	0	0	0	0.37803	1	12546	12546		100.27	0.89773	1	484260			52776	8174	36802	36863	58098	58098					0.06081391553209414
MWILFFLW	8	Unmodified	_MWILFFLW_					0	0	0		ENSG00000204642|ENST00000259951|HLA-F	ENSG00000204642|ENST00000259951|HLA-F	ENSG00000204642|ENST00000259951|HLA-F	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3031616210938	2	578.306624	1154.59869	-0.37299	-0.0002157	-1.6382	-0.00094738	-2.0112	-0.0011631	578.3056401161373	52.168	1.0081	51.984	51.669	52.677	-0.18405					79	25	5	0	0	0	0.8525	1	5385	5385		54.895	12.03	1	7795300			52777	10364	36803	36864	58099	58099					0.02757957341236761
MWKKLATY	8	Unmodified	_MWKKLATY_					0	0	0			REV__ENSG00000087338|ENST00000282570|GMCL1	REV__ENSG00000087338|ENST00000282570|GMCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.783935546875	2	520.783513	1039.55247	0.7045	0.00036689	0.53419	0.0002782	1.2387	0.00064509	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	1.0017	1	13314	13314		37.028	3.5129	1	3641400	+		52778	20799	36804	36865	58100	58100					0.03427892439162861
MWTLALGRPVI	11	Unmodified	_MWTLALGRPVI_					0	0	0		ENST00000507522.1_1_5:253163-256532:+|nuORF	ENST00000507522.1_1_5:253163-256532:+|nuORF	ENST00000507522.1_1_5:253163-256532:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	419.5777587890625	3	419.577643	1255.7111	-0.28333	-0.00011888	0.060323	2.531E-05	-0.22301	-9.3568E-05	419.5776916553497	21.419	1.1523	21.329	21.01	22.162	-0.090092					69	23	5	0	0	0	1.0327	1	650	650		29.551	5.3189	1	975880			52779	15765	36805	36866	58101	58101					0.09347186347417846
MWVERQMWSE	10	Unmodified	_MWVERQMWSE_					0	0	0			REV__ENSG00000173120|ENST00000529006|KDM2A	REV__ENSG00000173120|ENST00000529006|KDM2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.2221374511719	3	461.205769	1380.59548	-0.065223	-3.0081E-05	2.2141	0.0010212	2.1489	0.00099107	461.20675822345015	42.64	0.46218	42.52	42.345	42.808	-0.12029					23	11	3	0	0	0	0.03519	1	3883	3883		15.333	6.9258	1	202760	+		52780	26740	36806	36867	58102	58102					-0.07959705565713193
MWWDRIMLT	9	Unmodified	_MWWDRIMLT_					0	0	0			REV__ENSG00000174915|ENST00000308020|PTDSS2	REV__ENSG00000174915|ENST00000308020|PTDSS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.7327880859375	3	417.87195	1250.59402	-0.4693	-0.00019611	-4.1427	-0.0017311	-4.612	-0.0019272	418.2036875945704	39.467	0.34361	39.244	38.999	39.343	-0.22311					10	8	2	0	0	0	0.024473	1	3328	3328		33.922	6.2777	1	147960	+		52781	26904	36807	36868	58103	58103					-0.021252948638448288
MYDPPCICT	9	Unmodified	_MYDPPCICT_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2533569335938	2	521.705756	1041.39696	-0.23277	-0.00012144	3.8713	0.0020197	3.6385	0.0018982	521.7075587047325	29.084	0.51326	28.934	28.7	29.213	-0.14952					26	11	3	0	0	0	0.024506	1	1699	1699		38.806	7.2273	1	274960	+		52782	25978	36808	36869	58104	58104					-0.12208262468925568
MYDPPCICT	9	Unmodified	_MYDPPCICT_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.705756	1041.39696	-0.25881	-0.00013502	3.7904	0.0019775	3.5316	0.0018425	521.707604967961	29.218	0.47598	29.046	28.808	29.284	-0.17258	0.011976	-0.00038422	NaN	55.504	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300110	+		52783	25978	36808	36869							-0.12208262468925568
MYEIVAEVT	9	Unmodified	_MYEIVAEVT_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.7587890625	2	527.759901	1053.50525	-1.1811	-0.00062332	1.137	0.00060007	-0.044071	-2.3259E-05	527.7599649701431	80.736	1.3042	80.584	80.259	81.563	-0.15169					74	31	3	0	0	0	0.31247	1	10015	10015		73.975	2.0973	1	1169400	+		52784	27189	36809	36870	58105	58105					-0.019364316224937284
MYFLCKIVR	9	Unmodified	_MYFLCKIVR_					0	0	0		ENST00000438801.1_1_1:80749082-80749172:+|nuORF	ENST00000438801.1_1_1:80749082-80749172:+|nuORF	ENST00000438801.1_1_1:80749082-80749172:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	586.8231201171875	2	586.819573	1171.62459	2.006	0.0011772	2.9663	0.0017407	4.9723	0.0029178	586.8212275462085	17.965	0.34126	17.965	17.795	18.136	0					16	6	4	0	0	0	0.88411	1	237	237		33.516	6.7195	1	112660			52785	14318	36810	36871	58106	58106					0.045644835212215185
MYFRHTIRKWF	11	Unmodified	_MYFRHTIRKWF_					0	0	0		ENST00000511884.6_2_4:31144777-31144999:+|nuORF	ENST00000511884.6_2_4:31144777-31144999:+|nuORF	ENST00000511884.6_2_4:31144777-31144999:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.9533081054688	3	528.946729	1583.81836	5.5752	0.002949	2.4074	0.0012734	7.9826	0.0042224	528.9479740128894	16.831	0.26423	16.577	16.456	16.72	-0.25378					21	8	4	0	0	0	1.1135	1	85	85		3.4087	1.8857	1	36809			52786	15847	36811	36872	58107	58107					0.0498015628165831
MYFVIFFW	8	Unmodified	_MYFVIFFW_					0	0	0		ENST00000389900.8_1_7:5770386-5778910:-|nuORF	ENST00000389900.8_1_7:5770386-5778910:-|nuORF	ENST00000389900.8_1_7:5770386-5778910:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7822265625	2	576.782982	1151.55141	-1.2871	-0.00074239	0.034888	2.0123E-05	-1.2522	-0.00072227	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	1.0241	1	7495	7495		33.493	0.68056	1	1856800			52787	13384	36812	36873	58108	58108					-0.0183032192974224
MYFVIFFW	8	Unmodified	_MYFVIFFW_					0	0	0		ENST00000389900.8_1_7:5770386-5778910:-|nuORF	ENST00000389900.8_1_7:5770386-5778910:-|nuORF	ENST00000389900.8_1_7:5770386-5778910:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.781982421875	2	576.782982	1151.55141	-0.73592	-0.00042447	-0.45316	-0.00026138	-1.1891	-0.00068585	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	0.9599	1	7596	7596		43.626	5.8145	1	1832600			52788	13384	36812	36873	58109	58109					-0.0183032192974224
MYIFPNLKP	9	Unmodified	_MYIFPNLKP_					0	0	0			REV__nc|ENSG00000225997|P0C604|OR4A8	REV__nc|ENSG00000225997|P0C604|OR4A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.27197265625	2	561.804445	1121.59434	-0.31877	-0.00017908	2.9143	0.0016373	2.5955	0.0014582	562.3087287938075	45.487	0.58411	45.387	45.154	45.738	-0.099445					18	16	2	0	0	0	0.024535	1	4279	4279		33.516	1.5607	1	125110	+		52789	37139	36813	36874	58110	58110					0.038404481276756997
MYMPSTALP	9	Unmodified	_MYMPSTALP_					0	0	0		ENST00000462423.1_1_1:153904922-153905503:-|nuORF;ENST00000480340.1_1_1:153904922-153905273:-|nuORF	ENST00000462423.1_1_1:153904922-153905503:-|nuORF	ENST00000462423.1_1_1:153904922-153905503:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.76458740234375	2	505.737914	1009.46127	-0.55414	-0.00028025	-4.292	-0.0021706	-4.8461	-0.0024509	505.7340909034264	80.03	0.16781	80.03	79.953	80.12	0					5	3	2	0	0	0	0.024325	1	9935	9935		60.294	2.4827	1	27146			52790	14708	36814	36875	58111	58111					-0.043077393204953296
MYNKIFAIP	9	Unmodified	_MYNKIFAIP_					0	0	0		nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.7900390625	2	548.79662	1095.57869	-0.47092	-0.00025844	3.2928	0.0018071	2.8219	0.0015486	549.3012138349446	92.537	0.42525	92.546	92.462	92.887	0.0085526					12	9	2	0	0	0	0.024487	1	11684	11684		40.573	14.999	1	129360			52791	6537	36815	36876	58112	58112					0.03472161610625335
MYNLLLSYD	9	Unmodified	_MYNLLLSYD_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000165125|Q9H1D0-2|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.2708740234375	2	566.273175	1130.5318	-0.29915	-0.0001694	-2.2226	-0.0012586	-2.5218	-0.001428	566.2721045457445	96.303	2.4519	96.147	95.313	97.765	-0.15646					86	55	4	0	0	0	0.18915	1	11902	11902		90.777	16.522	1	1015900			52792	18462;4241	36816	36877	58113	58113					-0.02824742731149854
MYNLLLSYD	9	Unmodified	_MYNLLLSYD_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000165125|Q9H1D0-2|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	566.273175	1130.5318	-0.77342	-0.00043797	-0.87471	-0.00049533	-1.6481	-0.00093329	566.2725096591118	96.413	1.8647	96.413	95.991	97.856	0	0.16054	0.0019077	NaN	90.777	95	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394280			52793	18462;4241	36816	36877							-0.02824742731149854
MYNLLLSYD	9	Unmodified	_MYNLLLSYD_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000165125|Q9H1D0-2|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.273175	1130.5318	0.38169	0.00021614	-1.9747	-0.0011182	-1.593	-0.00090206	566.2720780971392	96.325	1.733	96.332	95.947	97.68	0.0065079	0.079606	0.00066192	NaN	90.777	86	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333120			52794	18462;4241	36816	36877							-0.02824742731149854
MYNLLLSYD	9	Unmodified	_MYNLLLSYD_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000165125|Q9H1D0-2|TRPV6;nc|ENSG00000127412|Q9NQA5-2|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	566.273175	1130.5318	0.32282	0.0001828	-2.0526	-0.0011623	-1.7298	-0.00097953	566.2718865095449	96.462	1.3357	96.464	96.035	97.371	0.0020752	0.21225	0.00057365	NaN	90.777	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345200			52795	18462;4241	36816	36877							-0.02824742731149854
MYPIFEKF	8	Unmodified	_MYPIFEKF_					0	0	0			REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7720336914062	2	537.770071	1073.52559	-0.14765	-7.9401E-05	3.7429	0.0020128	3.5952	0.0019334	537.7719444586712	58.711	2.5018	58.469	57.341	59.843	-0.24165					141	62	4	0	0	0	0.43637	1	6392	6392		92.191	3.5478	1	7703000	+		52796	23678	36817	36878	58114	58114					-0.008232161720343356
MYPPMMARY	9	Unmodified	_MYPPMMARY_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.2593994140625	2	580.258491	1158.50243	-0.15914	-9.234E-05	2.5469	0.0014778	2.3877	0.0013855	580.2596893381582	42.594	1.1564	42.471	42.155	43.311	-0.12299					68	30	5	0	0	0	0.24299	1	3847	3847		83.287	24.505	1	2736200	+		52797	22351	36818	36879	58115	58115					-0.07048301552663361
MYPPMMARY	9	Unmodified	_MYPPMMARY_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	580.258491	1158.50243	-0.15914	-9.234E-05	2.5469	0.0014778	2.3877	0.0013855	580.2596893381582	42.594	1.1564	42.471	42.155	43.311	-0.12299	-0.020433	-0.00036245	NaN	83.287	68	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2736200	+		52798	22351	36818	36879							-0.07048301552663361
MYQKDPVK	8	Unmodified	_MYQKDPVK_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2;ENST00000498819.1_1_9:91963122-91972225:+|nuORF	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7646789550781	2	504.762778	1007.511	-1.1999	-0.00060565	4.4546	0.0022485	3.2547	0.0016429	504.76496920813327	20.728	1.0685	20.728	20.274	21.342	0					59	21	4	0	0	0	0.89627	1	565	565		51.335	12.529	1	756930			52799	9655	36819	36880	58116	58116					0.007547116798264142
MYQKDPVK	8	Unmodified	_MYQKDPVK_					0	0	0		nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2;ENST00000498819.1_1_9:91963122-91972225:+|nuORF	nc|ENSG00000187742|Q96T21-2|SECISBP2	nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.762778	1007.511	0.72127	0.00036407	2.9287	0.0014783	3.6499	0.0018424	504.7641933288911	20.75	0.44246	20.819	20.612	21.054	0.068901	0.044859	-0.0010808	NaN	51.335	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25986			52800	9655	36819	36880							0.007547116798264142
MYRKLTVN	8	Oxidation (M)	_M(Oxidation (M))YRKLTVN_		M(1)YRKLTVN		M(41)YRKLTVN	0	0	1			REV__ENST00000538862.6_1_12:6957987-6958203:-|nuORF	REV__ENST00000538862.6_1_12:6957987-6958203:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.78369140625	2	520.781502	1039.54845	-0.089112	-4.6408E-05	4.081	0.0021253	3.9919	0.0020789	520.7840714436154	105.85	0.58363	105.85	105.4	105.99	-0.0013123					29	20	2	0	0	0	0.97924	1	13551	13551		40.573	8.6178	1	160800	+		52801	34723	36820	36881	58117	58117		940			0.03025802945421674
MYVEGTAVVMG	11	Unmodified	_MYVEGTAVVMG_					0	0	0		ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	ENSG00000148481|ENST00000277632|MINDY3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.772216796875	2	578.772485	1155.53042	-0.43628	-0.00025251	0.081121	4.6951E-05	-0.35516	-0.00020556	578.7725592985578	86.184	0.8212	86.139	85.861	86.683	-0.045097					44	18	4	0	0	0	0.96716	1	10794	10794		44.117	1.7207	1	659300			52802	6033	36821	36882	58118	58118					-0.041127000915821554
MYVQKKKR	8	Unmodified	_MYVQKKKR_					0	0	0		nc|ENSG00000186577|Q86T20-2|SMIM29;ENSG00000186577|ENST00000476320|SMIM29	nc|ENSG00000186577|Q86T20-2|SMIM29	nc|ENSG00000186577|Q86T20-2|SMIM29	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8208618164062	2	540.820961	1079.62737	-0.28344	-0.00015329	-0.53656	-0.00029018	-0.81999	-0.00044347	540.820626521652	105.76	0.87628	105.64	105.44	106.32	-0.12444					59	31	3	0	0	0	1.0133	1	13177	13177		35.201	4.6971	1	286110			52803	9563	36822	36883	58119	58119					0.09074074970385482
NAAARSLLS	9	Unmodified	_NAAARSLLS_					0	0	0		ENST00000261211.7_1_12:96794037-96794286:-|nuORF	ENST00000261211.7_1_12:96794037-96794286:-|nuORF	ENST00000261211.7_1_12:96794037-96794286:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7608947753906	2	451.756341	901.498129	-0.28321	-0.00012794	0.79369	0.00035856	0.51048	0.00023061	451.7561791994835	38.623	0.31073	38.528	38.322	38.632	-0.094933					12	7	2	0	0	0	0.02435	1	3253	3253		42.396	0	1	165100			52804	11461	36823	36884	58120	58120					0.043440166119466994
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2731628417969	2	492.27269	982.530826	-0.25839	-0.0001272	-0.24153	-0.0001189	-0.49991	-0.00024609	492.2727823729576	23.673	1.1973	23.673	23.321	24.518	0					87	27	6	0	0	0	0.25032	5	947	942;947;959;972;984		82.305	23.523	1	13782000			52805	10322	36824	36885	58121;58122;58123;58124;58125	58122					0.038862237347984774
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2725830078125	2	492.27269	982.530826	-0.71518	-0.00035207	0.18542	9.1278E-05	-0.52976	-0.00026079	492.27298155557884	23.644	1.2899	23.583	23.229	24.519	-0.060862					90	29	5	0	0	0	0.17455	5	962	937;949;962;977;988		94.006	28.109	1	14061000			52806	10322	36824	36885	58126;58127;58128;58129;58130	58128					0.038862237347984774
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2734375	2	492.27269	982.530826	-0.41217	-0.0002029	0.0746	3.6723E-05	-0.33757	-0.00016618	492.27291826748143	23.509	1.2729	23.585	23.272	24.545	0.076239					94	28	6	0	0	0	0.33245	4	880	880;892;918;932		71.296	16.519	1	13967000			52807	10322	36824	36885	58131;58132;58133;58134	58131					0.038862237347984774
NAAIKYQEQ	9	Unmodified	_NAAIKYQEQ_					0	0	0			REV__ENSG00000164749|ENST00000396423|HNF4G	REV__ENSG00000164749|ENST00000396423|HNF4G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8007202148438	2	532.772188	1063.52982	-0.69526	-0.00037041	2.2578	0.0012029	1.5625	0.00083248	532.7735299044772	43.734	0.38254	43.629	43.434	43.817	-0.10468					15	9	2	0	0	0	0.024344	1	4040	4040		54.776	26.894	1	290130	+		52808	25798	36825	36886	58135	58135					0.0005996457521177945
NAAIKYQEQ	9	Unmodified	_NAAIKYQEQ_					0	0	0			REV__ENSG00000164749|ENST00000396423|HNF4G	REV__ENSG00000164749|ENST00000396423|HNF4G	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.772188	1063.52982	-1.3948	-0.0007431	0.77913	0.0004151	-0.61565	-0.000328	532.7724434281715	43.566	0.5037	43.566	43.332	43.836	0	-0.088417	4.8492E-05	NaN	64.207	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400200	+		52809	25798	36825	36886							0.0005996457521177945
NAAIKYQEQ	9	Unmodified	_NAAIKYQEQ_					0	0	0			REV__ENSG00000164749|ENST00000396423|HNF4G	REV__ENSG00000164749|ENST00000396423|HNF4G	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.772188	1063.52982	-0.31619	-0.00016846	-0.3315	-0.00017661	-0.64768	-0.00034507	532.7719175633705	43.655	0.57909	43.685	43.413	43.992	0.030827	0.030631	-0.0011349	NaN	64.207	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359730	+		52810	25798	36825	36886							0.0005996457521177945
NAAIKYQEQ	9	Unmodified	_NAAIKYQEQ_					0	0	0			REV__ENSG00000164749|ENST00000396423|HNF4G	REV__ENSG00000164749|ENST00000396423|HNF4G	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.772188	1063.52982	-1.2103	-0.00064483	2.4347	0.0012972	1.2244	0.00065234	532.7732902425013	43.93	0.51485	43.711	43.525	44.04	-0.21939	0.056038	0.0018126	NaN	64.207	24	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348520	+		52811	25798	36825	36886							0.0005996457521177945
NAAINAVVK	9	Unmodified	_NAAINAVVK_					0	0	0			REV__ENSG00000156222|ENST00000394573|SLC28A1	REV__ENSG00000156222|ENST00000394573|SLC28A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7532958984375	2	450.269084	898.523616	-0.74349	-0.00033477	-0.0045932	-2.0682E-06	-0.74809	-0.00033684	450.2690304854004	39.864	0.54948	39.752	39.467	40.016	-0.11222					23	14	2	0	0	0	0.023417	1	3479	3479		68.787	0	1	122350	+		52812	25061	36826	36887	58136	58136					0.07029491134380805
NAALFPRPE	9	Unmodified	_NAALFPRPE_					0	0	0		ENSG00000179142|ENST00000323110|CYP11B2	ENSG00000179142|ENST00000323110|CYP11B2	ENSG00000179142|ENST00000323110|CYP11B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.29840087890625	2	507.771991	1013.52943	-0.46826	-0.00023777	2.8736	0.0014592	2.4054	0.0012214	508.2760258817454	27.205	0.91401	26.963	26.335	27.249	-0.24217					32	21	2	0	0	0	0.024487	1	1448	1448		17.365	0.89182	1	73313			52813	8876	36827	36888	58137	58137					0.02320589646035387
NAAPARVAL	9	Unmodified	_NAAPARVAL_					0	0	0		GLRA3|p.D280N|1|0.34|ENSG00000145451|chr4:174677167-174677167|C/T|missense_variant	GLRA3|p.D280N|1|0.34|ENSG00000145451|chr4:174677167-174677167|C/T|missense_variant	GLRA3|p.D280N|1|0.34|ENSG00000145451|chr4:174677167-174677167|C/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-2	2	441.76123046875	2	441.761426	881.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.805	1	38.707	38.207	39.207	-0.098755								0	0	0	0.10746	1	3268	3268		90.777	2.1338	1				52814	17681	36828	36889	58138	58138					0.06280624337171048
NAAPGVDLAV	10	Unmodified	_NAAPGVDLAV_					0	0	0		ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7	ENSG00000173908|ENST00000306658|KRT28	ENSG00000173908|ENST00000306658|KRT28	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.75103759765625	2	463.750724	925.486896	0.084884	3.9365E-05	-0.12603	-5.8446E-05	-0.041144	-1.908E-05	463.75069992220415	50.037	1.1292	49.886	49.558	50.687	-0.1512					84	32	4	0	0	0	0.48123	1	5165	5165		90.37	16.205	1	10637000		+	52815	564	36829	36890	58139	58139					0.021171945178025453
NAAQVRLV	8	Unmodified	_NAAQVRLV_					0	0	0			REV__ENST00000405223.6_1_2:43871812-43968195:+|nuORF	REV__ENST00000405223.6_1_2:43871812-43968195:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.762939453125	2	435.761426	869.5083	0.19447	8.4742E-05	-0.39573	-0.00017244	-0.20126	-8.7701E-05	435.76112408297274	36.571	1.603	36.571	36.029	37.632	0					66	43	2	0	0	0	0.81662	1	2924	2924		57.811	11.859	1	3547400	+		52816	24850	36830	36891	58140	58140					0.06832624337187099
NAAQVRLV	8	Unmodified	_NAAQVRLV_					0	0	0			REV__ENST00000405223.6_1_2:43871812-43968195:+|nuORF	REV__ENST00000405223.6_1_2:43871812-43968195:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.76318359375	2	435.761426	869.5083	-0.087464	-3.8113E-05	-0.134	-5.8391E-05	-0.22146	-9.6504E-05	435.7612574410274	36.523	1.7283	36.561	36.065	37.793	0.038044					69	46	2	0	0	0	0.93274	1	2870	2870		47.916	1.9636	1	3562500	+		52817	24850	36830	36891	58141	58141					0.06832624337187099
NACILFLPL	9	Carbamidomethyl (C)	_NAC(Carbamidomethyl (C))ILFLPL_	NAC(1)ILFLPL		NAC(41)ILFLPL		0	1	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MSMS	OPSCC_40_ClassI_Rep-3	6	530.7999267578125	2	530.79662	1059.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.578	1	97.417	96.917	97.917	-0.16106								0	0	0	0.59296	1	12058	12058		40.573	6.4001	1				52818	9075	36831	36892	58142	58142	111				0.051281616106280126
NADDYFLL	8	Unmodified	_NADDYFLL_					0	0	0		nc|ENSG00000133488|Q9UDX3-2|SEC14L4;ENST00000320982.3_1_22:30886116-30899718:-|nuORF;ENSG00000133488|ENST00000255858|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.76666259765625	2	485.729458	969.444362	-0.13624	-6.6174E-05	3.7258	0.0018097	3.5895	0.0017435	485.7310940814935	72.788	0.68659	72.511	72.24	72.926	-0.2769					38	15	3	0	0	0	0.027866	1	8505	8505		44.117	0	1	649450			52819	4713	36832	36893	58143	58143					-0.04158200610413587
NADEVNVIV	9	Unmodified	_NADEVNVIV_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2799987792969	2	486.753464	971.492375	-0.98413	-0.00047903	-0.51966	-0.00025294	-1.5038	-0.00073197	486.75313345637005	50.728	0.60681	50.809	50.576	51.183	0.080994					26	16	2	0	0	0	0.023655	1	5234	5234		60.118	14.146	1	413100	+		52820	25874	36833	36894	58144	58144					0.005488733096285614
NADEVNVIV	9	Unmodified	_NADEVNVIV_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.753464	971.492375	0.31987	0.0001557	-3.1388	-0.0015278	-2.8189	-0.0013721	486.7515582669042	50.841	0.22301	50.729	50.6	50.823	-0.11163	-0.080185	-0.0015699	NaN	60.118	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94107	+		52821	25874	36833	36894							0.005488733096285614
NADEVNVIV	9	Unmodified	_NADEVNVIV_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.753464	971.492375	0.33232	0.00016176	-2.6777	-0.0013034	-2.3453	-0.0011416	486.75198692355525	51.047	0.41461	50.771	50.627	51.042	-0.27643	-0.038473	-0.001121	NaN	60.118	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190180	+		52822	25874	36833	36894							0.005488733096285614
NADPTKGLL	9	Unmodified	_NADPTKGLL_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7586669921875	2	464.758549	927.502546	-0.70158	-0.00032607	0.90493	0.00042058	0.20335	9.4508E-05	464.7587868518152	53.511	0.79794	53.364	53.023	53.821	-0.14723					55	21	4	0	0	0	0.28753	1	5776	5776		77.318	5.4401	1	2732200			52823	7438	36834	36895	58145	58145					0.03589481034862274
NADPTKGLL	9	Unmodified	_NADPTKGLL_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	464.758549	927.502546	0.13678	6.3568E-05	0.034339	1.5959E-05	0.17111	7.9527E-05	464.7584167411413	53.265	0.79156	53.36	52.98	53.771	0.095669	-0.025426	-0.00041754	NaN	77.318	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2577300			52824	7438	36834	36895							0.03589481034862274
NADQPQVPPG	10	Unmodified	_NADQPQVPPG_					0	0	0			REV__ENSG00000197712|ENST00000358869|FAM114A1	REV__ENSG00000197712|ENST00000358869|FAM114A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7739562988281	2	511.748713	1021.48287	-0.5305	-0.00027148	0.75114	0.00038439	0.22064	0.00011291	511.7488407971033	36.921	1.1055	36.701	36.324	37.429	-0.2195					49	27	4	0	0	0	0.03519	1	2958	2958		31.53	0	1	676110	+		52825	28339	36835	36896	58146	58146					-0.027008949758965173
NADQPQVPPG	10	Unmodified	_NADQPQVPPG_					0	0	0			REV__ENSG00000197712|ENST00000358869|FAM114A1	REV__ENSG00000197712|ENST00000358869|FAM114A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7739562988281	2	511.748713	1021.48287	-1.0741	-0.00054966	2.83	0.0014482	1.7559	0.00089856	511.7501294915552	37.262	0.62202	37.043	36.846	37.468	-0.2195					29	15	2	0	0	0	0.03519	1	2958	2958		31.53	0	1	270040	+		52826	28339	36835	36896	58147	58147					-0.027008949758965173
NAEFIQFY	8	Unmodified	_NAEFIQFY_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.277587890625	2	516.245275	1030.476	-0.73187	-0.00037783	3.1865	0.001645	2.4546	0.0012672	516.2465133986165	46.086	0.33643	45.884	45.669	46.005	-0.20226					14	8	2	0	0	0	0.027866	1	4423	4423		29.15	3.6994	1	290750			52827	9783	36836	36897	58148	58148					-0.03802207856460882
NAEFIQFY	8	Unmodified	_NAEFIQFY_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.245275	1030.476	-0.19227	-9.9257E-05	-0.2241	-0.00011569	-0.41637	-0.00021495	516.2441114756126	46.245	0.68529	45.984	45.701	46.387	-0.26118	0.076395	-0.0026798	NaN	45.952	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242550			52828	9783	36836	36897							-0.03802207856460882
NAEIRSTG	8	Unmodified	_NAEIRSTG_					0	0	0			REV__ENST00000495842.5_1_3:101504262-101504385:+|nuORF	REV__ENST00000495842.5_1_3:101504262-101504385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.2186584472656	2	424.217049	846.419545	0.85808	0.00036401	2.6118	0.001108	3.4698	0.001472	424.21808049737785	98.51	2.2248	98.507	97.634	99.859	-0.0026703					125	51	4	0	0	0	0.96769	1	12490	12490		42.396	1.618	1	7197400	+		52829	33810	36837	36898	58149	58149					-0.009808356931330309
NAFKMRSNV	9	Unmodified	_NAFKMRSNV_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7745361328125	2	533.776751	1065.53895	0.18996	0.0001014	-4.0766	-0.002176	-3.8866	-0.0020746	533.7743914659342	50.781	1.1346	50.67	50.267	51.401	-0.11163					67	29	4	0	0	0	0.70156	1	5184	5184		45.972	1.8554	1	3083600	+		52830	20674	36838	36899	58150	58150					0.008800346599173281
NAFKMRSNV	9	Unmodified	_NAFKMRSNV_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7740478515625	2	533.776751	1065.53895	-0.16979	-9.063E-05	-3.7806	-0.002018	-3.9504	-0.0021086	533.7746245646101	50.998	1.097	50.721	50.443	51.54	-0.27643					56	28	3	0	0	0	0.42604	1	5201	5201		64.207	0.901	1	2809100	+		52831	20674	36838	36899	58151	58151					0.008800346599173281
NAFLLPVK	8	Unmodified	_NAFLLPVK_					0	0	0		ENST00000553612.5_1_14:81644196-81644316:-|nuORF	ENST00000553612.5_1_14:81644196-81644316:-|nuORF	ENST00000553612.5_1_14:81644196-81644316:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.74725341796875	2	451.278921	900.543289	-0.12131	-5.4745E-05	-4.4213	-0.0019952	-4.5426	-0.00205	451.2767813435898	31.066	0.59103	31.078	30.914	31.505	0.011797					21	13	2	0	0	0	0.027866	1	2045	2045		18.324	0.95945	1	144760			52832	16642	36839	36900	58152	58152					0.08903867145136246
NAFYDAQV	8	Unmodified	_NAFYDAQV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.27813720703125	2	464.213975	926.413397	-0.044625	-2.0716E-05	3.8844	0.0018032	3.8397	0.0017825	464.21567233876976	49.482	0.7737	49.331	49.007	49.781	-0.1512					31	20	2	0	0	0	0.027866	1	5091	5091		42.864	0	1	91907			52833	8962	36840	36901	58153	58153					-0.052753539246623404
NAGEDADMATL	11	Unmodified	_NAGEDADMATL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.2333374023438	2	554.234778	1106.455	0.98486	0.00054584	-3.1059	-0.0017214	-2.1211	-0.0011756	554.2328665625762	85.433	0.91681	85.433	85.082	85.998	0					49	21	4	0	0	0	0.76305	2	10710	10710;10733		59.931	1.7857	1	1417900	+		52834	28136	36841	36902	58154;58155	58154					-0.09396586018283415
NAGEDADMATL	11	Unmodified	_NAGEDADMATL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.2334594726562	2	554.234778	1106.455	-0.61696	-0.00034194	-1.5631	-0.00086632	-2.1801	-0.0012083	554.2337362243477	85.424	0.91447	85.367	85.063	85.977	-0.05761					52	21	4	0	0	0	0.55321	2	10673	10673;10685		72.879	19.987	1	1142900	+		52835	28136	36841	36902	58156;58157	58156					-0.09396586018283415
NAGEDADMATL	11	Unmodified	_NAGEDADMATL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	554.234778	1106.455	0.98486	0.00054584	-3.1059	-0.0017214	-2.1211	-0.0011756	554.2328665625762	85.433	0.91681	85.433	85.082	85.998	0	0.046155	-0.0013665	NaN	72.879	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1417900	+		52836	28136	36841	36902							-0.09396586018283415
NAGEDADMATL	11	Unmodified	_NAGEDADMATL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	554.234778	1106.455	-0.61696	-0.00034194	-1.5631	-0.00086632	-2.1801	-0.0012083	554.2337362243477	85.424	0.91447	85.367	85.063	85.977	-0.05761	-0.020542	0.00034368	NaN	72.879	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1142900	+		52837	28136	36841	36902							-0.09396586018283415
NAGEDADMATL	11	Unmodified	_NAGEDADMATL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	554.234778	1106.455	-0.7093	-0.00039312	-1.4729	-0.00081632	-2.1822	-0.0012094	554.2337541126783	85.336	0.91087	85.362	85.078	85.988	0.025536	-0.025613	0.00044369	NaN	72.879	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1198500	+		52838	28136	36841	36902							-0.09396586018283415
NAGHKLLIV	9	Unmodified	_NAGHKLLIV_					0	0	0			REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2569274902344	2	482.800552	963.58655	-0.53619	-0.00025888	0.44642	0.00021553	-0.089772	-4.3342E-05	482.8005199753472	36.519	0.95617	36.477	35.931	36.887	-0.042458					40	25	2	0	0	0	0.024487	1	2941	2941		24.203	0	1	148330	+		52839	32382	36842	36903	58158	58158					0.10330056922418862
NAGHKLLIV	9	Unmodified	_NAGHKLLIV_					0	0	0			REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	REV__ENST00000432432.6_1_2:95480778-95522914:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	482.800552	963.58655	-0.60671	-0.00029292	0.61813	0.00029843	0.011416	5.5118E-06	482.80065604496343	36.677	0.62528	36.715	36.338	36.963	0.038044	0.078768	0.0004427	NaN	23.042	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195230	+		52840	32382	36842	36903							0.10330056922418862
NAGHSRILT	9	Unmodified	_NAGHSRILT_					0	0	0		ENST00000476956.5_1_6:127588010-127588151:+|nuORF	ENST00000476956.5_1_6:127588010-127588151:+|nuORF	ENST00000476956.5_1_6:127588010-127588151:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2701110839844	2	484.76724	967.519927	-0.50326	-0.00024396	-0.99361	-0.00048167	-1.4969	-0.00072563	484.76614989223185	27.396	0.40433	27.383	27.241	27.645	-0.012983					17	10	2	0	0	0	0.024477	1	1463	1463		14.865	0	1	95101			52841	15105	36843	36904	58159	58159					0.03486821360513659
NAGKRAVP	8	Unmodified	_NAGKRAVP_					0	0	0		ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2349853515625	2	406.740494	811.466435	-0.47762	-0.00019427	-0.75746	-0.00030809	-1.2351	-0.00050236	406.73995975981404	28.954	0.47237	28.805	28.615	29.087	-0.14952					14	10	2	0	0	0	0.027866	1	1739	1739		17.365	0	1	82942			52842	13182	36844	36905	58160	58160					0.05316068648653527
NAGKRAVPG	9	Unmodified	_NAGKRAVPG_					0	0	0		ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2512512207031	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	0.92825	1	9736	9736		30.504	2.2494	1	1708300			52843	13182	36845	36906	58161	58161					0.04839453677379879
NAGKRAVPG	9	Unmodified	_NAGKRAVPG_					0	0	0		ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25146484375	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	0.90698	1	9459	9459		31.955	1.4512	1	1872200			52844	13182	36845	36906	58162	58162					0.04839453677379879
NAGLFEAL	8	Unmodified	_NAGLFEAL_					0	0	0		TBC1D22A-GCAT|2|fusion;TBC1D22A-GCAT|1|fusion;nc|ENSG00000100116|O75600-2|GCAT;ENSG00000100116|ENST00000248924|GCAT	TBC1D22A-GCAT|2|fusion	TBC1D22A-GCAT|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.8744201660156	2	417.721436	833.428318	0.29582	0.00012357	2.6713	0.0011158	2.9671	0.0012394	417.7219997131639	37.227	0.30906	37.017	36.883	37.192	-0.2092					12	7	2	0	0	0	0.027866	1	2947	2947		18.324	10.093	1	55289			52845	38059	36846	36907	58163	58163					0.004941379433262227
NAGLLGLGPE	10	Unmodified	_NAGLLGLGPE_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.74835205078125	2	470.758549	939.502546	0.043613	2.0531E-05	-0.12488	-5.8787E-05	-0.081263	-3.8255E-05	470.7583895141644	45.667	0.81903	45.414	45.157	45.976	-0.25252					50	22	3	0	0	0	0.03519	1	4321	4321		14.865	0	1	1339100			52846	10317	36847	36908	58164	58164					0.030374810348689607
NAGTFLKN	8	Unmodified	_NAGTFLKN_					0	0	0		nc|ENSG00000138380|Q8N187-2|CARF	nc|ENSG00000138380|Q8N187-2|CARF	nc|ENSG00000138380|Q8N187-2|CARF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7322082519531	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	0.97794	1	12519	12519		40.778	3.6191	1	3615900			52847	18320	36848	36909	58165	58165					0.012929426919072284
NAGVKVVQ	8	Unmodified	_NAGVKVVQ_					0	0	0			REV__CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant	REV__CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.6959228515625	2	407.742702	813.470852	0.33023	0.00013465	-0.22637	-9.2301E-05	0.10386	4.2347E-05	407.74252069047975	36.728	0.5634	36.511	36.165	36.729	-0.21661					15	13	2	0	0	0	0.027866	1	2887	2887		17.365	6.4994	1	53137	+		52848	19623	36849	36910	58166	58166					0.05665533071578466
NAGVLYNPD	9	Unmodified	_NAGVLYNPD_					0	0	0			REV__nc|ENSG00000104067|Q07157|TJP1	REV__nc|ENSG00000104067|Q07157|TJP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7792053222656	2	481.732532	961.45051	-0.45976	-0.00022148	-0.17418	-8.3908E-05	-0.63394	-0.00030539	481.73282853806495	59.67	2.7162	59.756	58.849	61.565	0.085682					135	72	5	0	0	0	0.024292	1	6896	6896		40.778	3.6191	1	1974800	+		52849	21416	36850	36911	58167	58167					-0.031756823789010014
NAIDTDHSGL	10	Unmodified	_NAIDTDHSGL_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.79638671875	2	521.743628	1041.4727	-0.69825	-0.00036431	0.048987	2.5558E-05	-0.64926	-0.00033875	521.7435328295538	68.539	0.75893	68.539	68.179	68.938	0					30	19	2	0	0	0	0.03519	1	8264	8264		40.778	7.9657	1	563810			52850	1823	36851	36912	58168	58168					-0.04637502701143603
NAIKTKIN	8	Unmodified	_NAIKTKIN_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|63|3|sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|63|3|sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|63|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.74810791015625	2	451.276909	900.539266	-0.49921	-0.00022528	0.36894	0.0001665	-0.13027	-5.8786E-05	451.2769620534998	31.172	0.67023	31.172	30.879	31.549	0					30	15	3	0	0	0	0.027866	1	2082	2082		31.955	5.1588	1	138310			52851	17892	36852	36913	58169	58169					0.08501777651406428
NAILNRNAKEV	11	Unmodified	_NAILNRNAKEV_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3492431640625	2	621.351668	1240.68878	0.34141	0.00021214	-3.1138	-0.0019348	-2.7724	-0.0017227	621.3493135019298	103.03	0.40285	102.86	102.64	103.04	-0.17034					27	9	4	0	0	0	1.0621	1	12799	12799		12.812	2.5465	1	2374500			52852	1286	36853	36914	58170	58170					0.07806678203382944
NAIRVPGNR	9	Unmodified	_NAIRVPGNR_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7884826660156	2	498.788507	995.562461	-0.28134	-0.00014033	-0.41741	-0.0002082	-0.69875	-0.00034853	498.7883463263969	21.483	1.0123	21.554	21.254	22.266	0.071489					58	20	4	0	0	0	0.80658	1	649	649		38.806	0	1	2483100			52853	10274	36854	36915	58171	58171					0.06450216488758542
NAITRQVE	8	Unmodified	_NAITRQVE_					0	0	0		ENSG00000162482|ENST00000361640|AKR7A3	ENSG00000162482|ENST00000361640|AKR7A3	ENSG00000162482|ENST00000361640|AKR7A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7535095214844	2	465.753798	929.493044	0.41926	0.00019527	-0.3103	-0.00014452	0.10897	5.0752E-05	465.753510429813	21.095	0.68781	20.899	20.582	21.27	-0.19577					29	13	3	0	0	0	0.68164	1	630	630		68.787	0	1	481960			52854	6947	36855	36916	58172	58172					0.025477127493331864
NAIYAMAHG	9	Unmodified	_NAIYAMAHG_					0	0	0		nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	nc|ENSG00000152822|Q13255-2|GRM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.28436279296875	2	474.22382	946.433086	-0.01293	-6.1315E-06	-0.054073	-2.5643E-05	-0.067003	-3.1774E-05	474.2233686052608	53.601	0.7766	53.697	53.481	54.258	0.095669					30	21	2	0	0	0	0.024443	1	5713	5713		26.796	5.8492	1	451410			52855	6302	36856	36917	58173	58173					-0.042273011855627374
NAKALKAK	8	Unmodified	_NAKALKAK_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.520751953125	2	422.27417	842.533787	0.13502	5.7017E-05	0.037655	1.5901E-05	0.17268	7.2918E-05	422.2740161594929	31.869	0.41721	31.632	31.45	31.867	-0.23667					11	9	2	0	0	0	0.027866	1	2144	2144		24.203	1.1603	1	58518			52856	7801	36857	36918	58174	58174					0.106220988596192
NAKEVQKLG	9	Unmodified	_NAKEVQKLG_					0	0	0			REV__ENSG00000152684|ENST00000274311|PELO	REV__ENSG00000152684|ENST00000274311|PELO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7814025878906	2	493.785099	985.555644	-0.60957	-0.000301	0.43163	0.00021313	-0.17794	-8.7865E-05	493.7837798251549	58.236	1.518	58.061	57.788	59.306	-0.1749					61	41	3	0	0	0	0.067814	2	6587	6587;6599		122.18	24.703	1	19482000	+		52857	24859	36858	36919	58175;58176	58175					0.06228858817519267
NAKEVQKLG	9	Unmodified	_NAKEVQKLG_					0	0	0			REV__ENSG00000152684|ENST00000274311|PELO	REV__ENSG00000152684|ENST00000274311|PELO	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7842102050781	2	493.785099	985.555644	-0.19922	-9.8374E-05	-3.7392	-0.0018464	-3.9385	-0.0019448	493.7797785056796	57.96	1.4252	58.051	57.643	59.068	0.091217					119	38	6	0	0	0	0.10174	2	6479	6479;6489		110.12	13.441	1	14888000	+		52858	24859	36858	36919	58177;58178	58177					0.06228858817519267
NAKVEYAIL	9	Unmodified	_NAKVEYAIL_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7607116699219	2	510.78985	1019.56515	1.1761	0.00060072	2.0111	0.0010273	3.1872	0.001628	510.7907642491416	17.637	0.59793	17.483	17.308	17.906	-0.15403					20	11	3	0	0	0	0.024535	1	241	241		25.45	1.2474	1	148350	+		52859	24139	36859	36920	58179	58179					0.056146271030456774
NALDAFLDD	9	Unmodified	_NALDAFLDD_					0	0	0			REV__ENSG00000186907|ENST00000335099|RTN4RL2	REV__ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.30059814453125	2	497.229822	992.445091	-0.60687	-0.00030175	2.4753	0.0012308	1.8684	0.00092902	497.2310440011988	64.814	0.31303	64.58	64.334	64.647	-0.2345					11	7	2	0	0	0	0.024374	1	7361	7361		32.812	12.816	1	158120	+		52860	27893	36860	36921	58180	58180					-0.0514340596139391
NALDAFLDD	9	Unmodified	_NALDAFLDD_					0	0	0			REV__ENSG00000186907|ENST00000335099|RTN4RL2	REV__ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.229822	992.445091	0.63035	0.00031343	2.5974	0.0012915	3.2277	0.0016049	497.2310641448897	64.365	0.48426	64.365	64.133	64.617	0	-0.072923	-0.00031378	NaN	32.812	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189300	+		52861	27893	36860	36921							-0.0514340596139391
NALDAFLDD	9	Unmodified	_NALDAFLDD_					0	0	0			REV__ENSG00000186907|ENST00000335099|RTN4RL2	REV__ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.229822	992.445091	-0.8354	-0.00041539	4.1847	0.0020807	3.3493	0.0016654	497.23160065503475	64.584	0.64067	64.322	64.155	64.796	-0.2626	-0.11641	0.0012648	NaN	32.812	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222810	+		52862	27893	36860	36921							-0.0514340596139391
NALDAFLDD	9	Unmodified	_NALDAFLDD_					0	0	0			REV__ENSG00000186907|ENST00000335099|RTN4RL2	REV__ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.229822	992.445091	0.55828	0.00027759	2.8821	0.0014331	3.4404	0.0017107	497.2311642889191	64.356	0.52686	64.401	64.153	64.68	0.045502	-0.036752	-3.056E-05	NaN	32.812	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217500	+		52863	27893	36860	36921							-0.0514340596139391
NALDQVDDGEV	11	Unmodified	_NALDQVDDGEV_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.231201171875	2	587.764757	1173.51496	-1.209	-0.00071062	1.4623	0.00085949	0.25329	0.00014888	587.7654521332566	48.678	0.82962	48.578	48.434	49.264	-0.1008					32	21	2	0	0	0	0.023913	1	4874	4874		76.17	3.2904	1	205310			52864	5658	36861	36922	58181	58181					-0.06485572083420266
NALDQVDDGEV	11	Unmodified	_NALDQVDDGEV_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.2310180664062	2	587.764757	1173.51496	-1.1627	-0.00068339	1.3151	0.00077299	0.15244	8.9601E-05	587.7653754920044	49.052	0.782	48.773	48.538	49.32	-0.27977					35	20	2	0	0	0	0.024814	1	4909	4909		45.022	0	1	356770			52865	5658	36861	36922	58182	58182					-0.06485572083420266
NALDQVDDGEV	11	Unmodified	_NALDQVDDGEV_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.2319946289062	2	587.764757	1173.51496	-0.86961	-0.00051112	1.5147	0.00089029	0.64509	0.00037916	587.7651934980769	48.887	0.47936	48.704	48.521	49	-0.18206					21	12	2	0	0	0	0.023913	1	4897	4897		66.962	1.8047	1	208120			52866	5658	36861	36922	58183	58183					-0.06485572083420266
NALDQVDDGEV	11	Unmodified	_NALDQVDDGEV_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	587.764757	1173.51496	-1.4132	-0.00083061	1.8958	0.0011143	0.48264	0.00028368	588.267283766359	48.928	0.32439	48.775	48.575	48.9	-0.15276	0.067411	0.00054408	NaN	76.17	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64335			52867	5658	36861	36922							-0.06485572083420266
NALDRALDP	9	Unmodified	_NALDRALDP_					0	0	0			REV__nc|ENSG00000065000|O14617-4|AP3D1	REV__nc|ENSG00000065000|O14617-4|AP3D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7696533203125	2	492.759081	983.503609	-0.20839	-0.00010268	-0.11315	-5.5757E-05	-0.32154	-0.00015844	492.7590321845645	42.244	0.8293	42.27	41.961	42.79	0.026016					59	23	3	0	0	0	0.023842	1	3821	3821		67.494	14.557	1	2755600	+		52868	20298	36862	36923	58184	58184					0.011196954037473006
NALETWDP	8	Unmodified	_NALETWDP_					0	0	0		ENSG00000099957|ENST00000413302|P2RX6;nc|ENSG00000099957|O15547-2|P2RX6	ENSG00000099957|ENST00000413302|P2RX6	ENSG00000099957|ENST00000413302|P2RX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75537109375	2	473.219257	944.423961	-0.43329	-0.00020504	-1.938	-0.00091711	-2.3713	-0.0011222	473.218111376062	39.63	0.35266	39.654	39.455	39.808	0.023727					11	9	2	0	0	0	0.027866	1	3383	3383		45.952	8.7928	1	104780			52869	2104	36863	36924	58185	58185					-0.05047371270245549
NALEVLLP	8	Unmodified	_NALEVLLP_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7594299316406	2	434.760561	867.506569	-0.42092	-0.000183	-2.4981	-0.0010861	-2.919	-0.0012691	434.7593793245515	21.563	1.6213	21.563	20.998	22.619	0					79	33	4	0	0	0	0.94517	1	690	690		45.952	0	1	1123500	+		52870	19378	36864	36925	58186	58186					0.06751570528570028
NALFFPLW	8	Unmodified	_NALFFPLW_					0	0	0			REV__ENSG00000043591|ENST00000369295|ADRB1	REV__ENSG00000043591|ENST00000369295|ADRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7667541503906	2	504.271096	1006.52764	-1.2389	-0.00062472	-3.0711	-0.0015486	-4.3099	-0.0021734	504.26910720066473	65.637	0.57785	65.423	65.175	65.753	-0.21327					19	13	2	0	0	0	0.027866	1	7535	7535		28.254	0	1	714500	+		52871	20108	36865	36926	58187	58187					0.024635806280798533
NALIRAAH	8	Unmodified	_NALIRAAH_					0	0	0			REV__ENST00000607742.5_1_6:158538757-158579378:-|nuORF	REV__ENST00000607742.5_1_6:158538757-158579378:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.25372314453125	2	433.253769	864.492984	-0.83314	-0.00036096	1.2075	0.00052315	0.37434	0.00016219	433.2542087262683	28.757	0.8978	28.757	28.362	29.26	0					47	21	4	0	0	0	0.95417	1	1706	1706		44.531	2.0566	1	1088400	+		52872	22637	36866	36927	58188	58188					0.05531757539972659
NALKDLSLSI	10	Unmodified	_NALKDLSLSI_					0	0	0		ENST00000482993.6_3_10:135273418-135278483:+|nuORF;ENST00000488261.6_3_10:135271820-135304727:+|nuORF;ENSG00000214279|ENST00000640237|SCART1	ENST00000482993.6_3_10:135273418-135278483:+|nuORF	ENST00000482993.6_3_10:135273418-135278483:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3128662109375	2	537.313689	1072.61282	-0.82651	-0.0004441	-0.089987	-4.8351E-05	-0.9165	-0.00049245	537.3135834181413	62.427	1.1544	62.489	62.301	63.456	0.062767					54	29	2	0	0	0	0.50517	1	7195	7195		87.696	1.8346	1	2256300			52873	10550	36867	36928	58189	58189					0.07942281303257914
NALKSTKLTGT	11	Unmodified	_NALKSTKLTGT_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A;REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3303833007812	2	567.32987	1132.64519	-0.48805	-0.00027688	0.030002	1.7021E-05	-0.45805	-0.00025986	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.9728	1	11333	11333		42.864	7.246	1	14972000	+		52874	24774;30646	36868	36929	58190	58190					0.08417068706216924
NALKVTTL	8	Unmodified	_NALKVTTL_					0	0	0			REV__PARG|p.N277Mfs*5|1|0.25|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	REV__PARG|p.N277Mfs*5|1|0.25|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.2659912109375	2	430.26601	858.517468	-0.5254	-0.00022606	0.25621	0.00011024	-0.26919	-0.00011583	430.26613061274514	48.43	1.7729	48.43	48.105	49.878	0					124	49	5	0	0	0	0.27053	2	4958	4958;4971		124.59	8.8749	1	22412000	+		52875	28883	36869	36930	58191;58192	58191					0.08254972902852842
NALKVTTL	8	Unmodified	_NALKVTTL_					0	0	0			REV__PARG|p.N277Mfs*5|1|0.25|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	REV__PARG|p.N277Mfs*5|1|0.25|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.26556396484375	2	430.26601	858.517468	0.029274	1.2595E-05	-0.28078	-0.00012081	-0.25151	-0.00010821	430.26588262723646	48.369	1.5648	48.436	48.043	49.608	0.066795					100	42	4	0	0	0	0.32162	1	4885	4885		108.09	5.3142	1	20086000	+		52876	28883	36869	36930	58193	58193					0.08254972902852842
NALLRTESD	9	Unmodified	_NALLRTESD_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7452392578125	2	509.76182	1017.50909	-1.088	-0.0005546	0.43563	0.00022207	-0.65233	-0.00033253	509.76194661154943	38.453	0.82998	38.453	38.003	38.833	0					32	22	2	0	0	0	0.024477	1	3273	3273		27.882	2.3082	1	504070			52877	4782	36870	36931	58194	58194					0.0010337419556663008
NALPSSRPT	9	Unmodified	_NALPSSRPT_					0	0	0			REV__ENST00000540180.5_1_12:498538-521038:+|nuORF	REV__ENST00000540180.5_1_12:498538-521038:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.80145263671875	2	471.753798	941.493044	0.8363	0.00039453	3.9366	0.0018571	4.7729	0.0022516	471.75503751824454	50.916	0.34037	50.805	50.749	51.09	-0.11163					11	8	2	0	0	0	0.024418	1	5240	5240		37.812	3.639	1	87026	+		52878	34742	36871	36932	58195	58195					0.019957127493285043
NALPSSRPT	9	Unmodified	_NALPSSRPT_					0	0	0			REV__ENST00000540180.5_1_12:498538-521038:+|nuORF	REV__ENST00000540180.5_1_12:498538-521038:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.753798	941.493044	0.21799	0.00010284	-0.35786	-0.00016882	-0.13988	-6.5987E-05	471.75326457248855	50.964	0.48309	50.815	50.561	51.044	-0.14916	-0.0037445	-0.00052817	NaN	30.318	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349040	+		52879	34742	36871	36932							0.019957127493285043
NALPSSRPT	9	Unmodified	_NALPSSRPT_					0	0	0			REV__ENST00000540180.5_1_12:498538-521038:+|nuORF	REV__ENST00000540180.5_1_12:498538-521038:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.753798	941.493044	0.036588	1.726E-05	-0.42204	-0.0001991	-0.38546	-0.00018184	471.75351203200233	50.654	0.63699	50.735	50.51	51.147	0.080994	-0.084331	-0.00058873	NaN	30.318	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341470	+		52880	34742	36871	36932							0.019957127493285043
NALRTRPR	8	Unmodified	_NALRTRPR_					0	0	0			REV__ENST00000392894.7_1_3:149530688-149531075:+|nuORF	REV__ENST00000392894.7_1_3:149530688-149531075:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7684631347656	2	492.296499	982.578445	-0.049027	-2.4136E-05	-3.1238	-0.0015378	-3.1728	-0.001562	492.29676281489196	42.581	0.66206	42.441	42.075	42.737	-0.13929					39	18	4	0	0	0	0.027866	1	3898	3898		58.782	6.4828	1	504320	+		52881	31624	36872	36933	58196	58196					0.08645922725645505
NALRVPRE	8	Unmodified	_NALRVPRE_					0	0	0		ACTL6A-ALG3|2|fusion;ACTL6A-ALG3|1|fusion;ENST00000491202.5_1_3:179280826-179288052:+|nuORF;nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	ACTL6A-ALG3|2|fusion;nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.77783203125	2	477.777608	953.540663	-0.080074	-3.8258E-05	-0.84906	-0.00040566	-0.92914	-0.00044392	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.96769	1	1514	1514		42.396	3.1433	1	79837000			52882	5024;20	36873	36934	58197	58197					0.062034117401822186
NALSRDLF	8	Unmodified	_NALSRDLF_					0	0	0		ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	ENSG00000163785|ENST00000623711|RYK	ENSG00000163785|ENST00000623711|RYK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.76654052734375	2	468.250892	934.48723	1.0051	0.00047065	1.9931	0.00093325	2.9982	0.0014039	468.2517964610363	36.921	0.39586	36.921	36.685	37.081	0					14	9	2	0	0	0	0.027866	1	2949	2949		37.159	25.648	1	117730			52883	7143	36874	36935	58198	58198					0.0173661423766589
NALTRPVID	9	Unmodified	_NALTRPVID_					0	0	0			REV__ENSG00000175398|ENST00000309675|OR10P1	REV__ENSG00000175398|ENST00000309675|OR10P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	499.785099	997.555644	0.43414	0.00021698	-0.25772	-0.0001288	0.17642	8.8171E-05	499.78473912470923	67.706	0.81418	67.706	67.326	68.14	0					35	17	3	0	0	0	0.024374	1	8065	8065		19.104	0	1	1027300	+		52884	26947	36875	36936	58199	58199					0.056768588175032164
NALVLCTLT	9	Unmodified	_NALVLCTLT_					0	0	0		ENST00000442133.8_1_10:75256199-75264836:+|nuORF;ENST00000593790.5_1_10:75258622-75279372:+|nuORF;ENST00000595935.1_1_10:75256658-75264307:+|nuORF;ENST00000600206.5_2_10:75256229-75279372:+|nuORF;ENST00000600607.5_2_10:75256658-75272986:+|nuORF;ENST00000595069.5_2_10:75256229-75278577:+|nuORF;ENST00000596320.5_2_10:75258622-75265046:+|nuORF;ENST00000597958.5_1_10:75256229-75279415:+|nuORF	ENST00000442133.8_1_10:75256199-75264836:+|nuORF	ENST00000442133.8_1_10:75256199-75264836:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.28436279296875	2	474.265153	946.515753	-0.22841	-0.00010833	-1.3979	-0.00066299	-1.6263	-0.00077131	474.26436041796325	53.367	0.43156	53.462	53.161	53.592	0.095669					16	11	2	0	0	0	0.024457	1	5713	5713		29.15	0	1	200010			52885	14377	36876	36937	58200	58200					0.040355958225973154
NANPSDGNN	9	Unmodified	_NANPSDGNN_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7606506347656	2	451.68357	901.352587	-0.91996	-0.00041553	0.7309	0.00033014	-0.18906	-8.5393E-05	451.6844244433114	39.022	0.18123	39.045	38.882	39.063	0.023727					5	4	2	0	0	0	0.024397	1	3238	3238		47.657	8.4045	1	45393			52886	2448	36877	36938	58201	58201					-0.10203490974890883
NAPLRDRPAPH	11	Unmodified	_NAPLRDRPAPH_					0	0	0			REV__ENST00000412997.5_1_3:20227443-20227779:-|nuORF	REV__ENST00000412997.5_1_3:20227443-20227779:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.3369750976562	2	622.336353	1242.65815	0.39402	0.00024521	0.063959	3.9804E-05	0.45798	0.00028502	622.336188137673	109.98	0.52066	109.97	109.79	110.31	-0.009491					57	23	4	0	0	0	0.98904	1	13912	13912		39.253	7.723	1	2001700	+		52887	32014	36878	36939	58202	58202					0.04652944608983489
NAPSQVPLVLL	11	Unmodified	_NAPSQVPLVLL_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8438110351562	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	1.013	1	10958	10958		33.922	4.7516	1	1877500			52888	2583	36879	36940	58203	58203					0.10690847091291289
NAPVLALPPAI	11	Unmodified	_NAPVLALPPAI_					0	0	0		ENST00000587176.5_1_19:55666069-55669122:-|nuORF	ENST00000587176.5_1_19:55666069-55669122:-|nuORF	ENST00000587176.5_1_19:55666069-55669122:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3268432617188	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	1.0442	1	12753	12753		26.693	0	1	22353000			52889	17264	36880	36941	58204	58204					0.1093947940810267
NAQDFYDW	8	Unmodified	_NAQDFYDW_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.23486328125	2	529.714339	1057.41412	-0.43928	-0.00023269	-2.0576	-0.00109	-2.4969	-0.0013226	529.712236681592	67.231	0.36328	66.993	66.838	67.201	-0.23814					13	8	2	0	0	0	0.027866	1	7746	7746		33.516	5.6333	1	185530			52890	4269	36881	36942	58205	58205					-0.11228559275627958
NAQERLLD	8	Unmodified	_NAQERLLD_					0	0	0			REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.278076171875	2	479.751256	957.487959	-0.70067	-0.00033615	-0.72602	-0.00034831	-1.4267	-0.00068446	479.7502007151674	84.03	0.39104	83.957	83.787	84.178	-0.072769					11	8	2	0	0	0	0.027866	1	10461	10461		44.117	5.3107	1	120700	+		52891	24976	36882	36943	58206	58206					0.007514088867083046
NAQKKLASI	9	Unmodified	_NAQKKLASI_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.26165771484375	2	486.795466	971.57638	0.018491	9.0016E-06	-1.1135	-0.00054206	-1.095	-0.00053306	486.79519471670415	46.737	0.39975	46.737	46.412	46.812	0					13	10	2	0	0	0	0.024477	1	4593	4593		27.882	3.6795	1	103930	+		52892	24366	36883	36944	58207	58207					0.0894544919716509
NAQLDRIT	8	Unmodified	_NAQLDRIT_					0	0	0			REV__ENST00000547581.5_1_12:48529049-48539488:+|nuORF	REV__ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.75341796875	2	465.753798	929.493044	0.28803	0.00013415	-0.18783	-8.7483E-05	0.1002	4.6666E-05	465.75354425163636	21.012	0.62769	20.835	20.581	21.209	-0.17721					30	12	4	0	0	0	0.91956	1	617	617		49.442	3.4693	1	505830	+		52893	24851	36884	36945	58208	58208					0.025477127493331864
NARESVEPN	9	Unmodified	_NARESVEPN_					0	0	0			REV__ENST00000528049.2_1_15:32791963-32792224:-|nuORF	REV__ENST00000528049.2_1_15:32791963-32792224:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2950744628906	2	508.243795	1014.47304	-1.1155	-0.00056695	1.0941	0.00055605	-0.021455	-1.0904E-05	508.2441972686538	21.119	0.49209	21.119	20.85	21.342	0					24	9	3	0	0	0	0.024397	1	645	645		31.53	6.0796	1	95937	+		52894	34485	36885	36946	58209	58209					-0.0336208298128895
NARPTAPAV	9	Unmodified	_NARPTAPAV_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7509460449219	2	448.751059	895.487565	-0.1679	-7.5347E-05	0.36293	0.00016287	0.19503	8.752E-05	448.75106674374916	28.27	0.83182	28.351	28.035	28.867	0.080811					47	19	4	0	0	0	0.31037	1	1578	1578		74.255	12.148	1	1735100	+		52895	28131	36886	36947	58210	58210					0.03564033957513857
NARPTAPAV	9	Unmodified	_NARPTAPAV_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.751059	895.487565	-0.76969	-0.0003454	1.1031	0.00049501	0.33339	0.00014961	448.7514018304404	28.6	0.84072	28.6	28.232	29.073	0	0.12497	0.00037378	NaN	74.255	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1647800	+		52896	28131	36886	36947							0.03564033957513857
NARPTAPAV	9	Unmodified	_NARPTAPAV_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	448.751059	895.487565	-0.1679	-7.5347E-05	0.36293	0.00016287	0.19503	8.752E-05	448.75106674374916	28.27	0.83182	28.351	28.035	28.867	0.080811	-0.12497	-0.0002905	NaN	74.255	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1735100	+		52897	28131	36886	36947							0.03564033957513857
NASGLGLSEP	10	Unmodified	_NASGLGLSEP_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7494201660156	2	472.737814	943.461075	0.23509	0.00011114	0.42202	0.00019951	0.65712	0.00031064	472.7379475968205	45.69	0.88803	45.734	45.344	46.232	0.043877					28	25	2	0	0	0	0.03519	1	4343	4343		47.657	19.775	1	196650	+		52898	23929	36887	36948	58211	58211					-0.012916997244701633
NATIRNVL	8	Unmodified	_NATIRNVL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000467443.5_1_22:21831964-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.76654052734375	2	450.766709	899.518865	-0.5884	-0.00026523	0.039547	1.7827E-05	-0.54885	-0.0002474	450.76665169506356	44.978	0.60017	44.879	44.554	45.154	-0.099445					28	15	2	0	0	0	0.38989	1	4232	4232		98.629	4.623	1	989290			52899	10789	36888	36949	58212	58212					0.06508606991610577
NATIRNVL	8	Unmodified	_NATIRNVL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000467443.5_1_22:21831964-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.766357421875	2	450.766709	899.518865	-0.36437	-0.00016425	-0.206	-9.2856E-05	-0.57037	-0.0002571	450.7664700767282	45.125	0.63266	44.872	44.59	45.223	-0.25252					26	16	2	0	0	0	0.36844	1	4249	4249		101.6	24.827	1	1031500			52900	10789	36888	36949	58213	58213					0.06508606991610577
NATIRNVL	8	Unmodified	_NATIRNVL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000467443.5_1_22:21831964-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.766709	899.518865	-0.50125	-0.00022595	-0.25092	-0.00011311	-0.75216	-0.00033905	450.76654827104045	45.101	0.58949	44.89	44.595	45.185	-0.21109	0.0099211	-6.6742E-05	NaN	101.6	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	923750			52901	10789	36888	36949							0.06508606991610577
NATYKEIGL	9	Unmodified	_NATYKEIGL_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2976989746094	2	504.771657	1007.52876	-0.64062	-0.00032337	1.049	0.00052953	0.40842	0.00020616	504.772060213301	61.818	0.43082	61.881	61.622	62.052	0.062767					19	11	2	0	0	0	0.024354	1	7058	7058		47.916	3.7988	1	313960			52902	2424	36889	36950	58214	58214					0.025297502063153843
NAVHITDNAI	10	Unmodified	_NAVHITDNAI_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8052978515625	2	534.277638	1066.54072	-0.67861	-0.00036257	-4.4656	-0.0023859	-5.1443	-0.0027485	534.7782245468629	44.976	0.56063	45.02	44.585	45.145	0.043877					33	15	3	0	0	0	0.03519	1	4270	4270		56.434	5.2411	1	172150	+		52903	27992	36890	36951	58215	58215					0.010113669495240174
NAVIQPQV	8	Unmodified	_NAVIQPQV_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7480163574219	2	434.747985	867.481417	0.16778	7.2943E-05	-0.27376	-0.00011901	-0.10597	-4.6072E-05	434.7479913700864	65.234	1.4639	65.272	64.78	66.244	0.037384					144	39	5	0	0	0	0.87148	1	7710	7710		53.351	3.9099	1	104280000	+		52904	28183	36891	36952	58216	58216					0.04237515726003949
NAVLNYGY	8	Unmodified	_NAVLNYGY_					0	0	0			REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.766845703125	2	457.224342	912.434132	-0.034267	-1.5668E-05	-3.746	-0.0017127	-3.7802	-0.0017284	457.2225556526199	23.586	0.38061	23.586	23.399	23.78	0					13	8	2	0	0	0	0.027866	1	925	925		12.959	0	1	49765	+		52905	25383	36892	36953	58217	58217					-0.025587635450051494
NAVPVCGYT	9	Unmodified	_NAVPVCGYT_					0	0	0			REV__ENSG00000091640|ENST00000206020|SPAG7	REV__ENSG00000091640|ENST00000206020|SPAG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2198181152344	2	462.218203	922.421853	0.073865	3.4142E-05	2.995	0.0013843	3.0688	0.0014185	462.2198513611375	60.198	0.7754	60.198	59.88	60.656	0					59	20	5	0	0	0	0.29104	1	6899	6899		76.847	0.072494	1	3541600	+		52906	20913	36893	36954	58218	58218					-0.04246123279699532
NAVPVCGYT	9	Unmodified	_NAVPVCGYT_					0	0	0			REV__ENSG00000091640|ENST00000206020|SPAG7	REV__ENSG00000091640|ENST00000206020|SPAG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.2203063964844	2	462.218203	922.421853	-0.98446	-0.00045503	4.0615	0.0018773	3.0771	0.0014223	462.22030992006717	60.103	0.93896	60.182	59.9	60.839	0.078888					63	24	4	0	0	0	0.29104	1	6821	6821		76.847	5.4687	1	2567400	+		52907	20913	36893	36954	58219	58219					-0.04246123279699532
NAVVPPSVEL	10	Unmodified	_NAVVPPSVEL_					0	0	0			REV__ENSG00000142619|ENST00000375460|PADI3	REV__ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7890625	2	512.787307	1023.56006	-1.9377	-0.00099364	2.6731	0.0013707	0.73535	0.00037708	512.7887136455325	38.451	0.90522	38.478	38.127	39.032	0.027275					91	24	6	0	0	0	0.57594	1	3158	3158		79.713	10.926	1	10593000	+		52908	24170	36894	36955	58220	58220					0.04922323240418791
NAVVPPSVEL	10	Unmodified	_NAVVPPSVEL_					0	0	0			REV__ENSG00000142619|ENST00000375460|PADI3	REV__ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7879638671875	2	512.787307	1023.56006	-0.042216	-2.1648E-05	-0.40603	-0.00020821	-0.44825	-0.00022986	512.7870450466863	71.371	0.99565	71.109	70.602	71.598	-0.26199					42	23	2	0	0	0	0.64538	1	8322	8322		71.877	0.49956	1	6164100	+		52909	24170	36894	36955	58221	58221					0.04922323240418791
NAWQFNKD	8	Unmodified	_NAWQFNKD_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.286865234375	2	511.738148	1021.46174	0.21327	0.00010914	1.9121	0.00097849	2.1254	0.0010876	511.73893048615696	58.633	0.65903	58.724	58.409	59.068	0.091217					26	17	2	0	0	0	0.027866	1	6527	6527		21.96	1.013	1	345830	+		52910	24890	36895	36956	58222	58222					-0.04812860284755516
NAWRGALQA	9	Unmodified	_NAWRGALQA_					0	0	0			REV__ENST00000481918.1_1_1:213186656-213188829:-|nuORF	REV__ENST00000481918.1_1_1:213186656-213188829:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.28704833984375	2	493.761958	985.509363	-0.0052992	-2.6166E-06	-1.1497	-0.00056768	-1.155	-0.0005703	493.7616230838451	22.314	0.31918	22.125	22.055	22.374	-0.18894					10	6	2	0	0	0	0.024354	1	784	784		38.806	0	1	32490	+		52911	33468	36896	36957	58223	58223					0.01602838706082821
NCASMWSVS	9	Unmodified	_NCASMWSVS_					0	0	0		ENST00000602402.5_1_13:96443709-96443949:+|nuORF	ENST00000602402.5_1_13:96443709-96443949:+|nuORF	ENST00000602402.5_1_13:96443709-96443949:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2794494628906	2	492.69932	983.384087	-0.06776	-3.3386E-05	0.11581	5.7061E-05	0.048053	2.3676E-05	492.6992195061391	41.328	0.59409	41.351	41.076	41.67	0.023003					27	16	2	0	0	0	0.024457	1	3620	3620		10.265	0	1	371310			52912	17527	36897	36958	58224	58224					-0.10826957536801274
NCFFHGFI	8	Unmodified	_NCFFHGFI_					0	0	0			REV__nc|ENSG00000148680|P34969-3|HTR7	REV__nc|ENSG00000148680|P34969-3|HTR7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.72393798828125	2	492.723455	983.432358	0.64059	0.00031564	2.256	0.0011116	2.8966	0.0014272	492.72441391473944	71.815	0.96526	71.815	71.528	72.493	0					62	24	4	0	0	0	1.0017	1	8718	8718		37.028	0	1	1990500	+		52913	19346	36898	36959	58225	58225					-0.06002095834605825
NCFYVVIKV	9	Unmodified	_NCFYVVIKV_					0	0	0			REV__ENST00000380680.4_1_13:30423667-30423889:-|nuORF	REV__ENST00000380680.4_1_13:30423667-30423889:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.775634765625	2	542.79662	1083.57869	-0.41332	-0.00022435	2.0897	0.0011343	1.6763	0.00090991	543.3003530606107	67.575	0.19796	67.575	67.408	67.606	0					6	4	2	0	0	0	0.024405	1	8052	8052		35.618	0	1	143600	+		52914	31491	36899	36960	58226	58226					0.040241616106186484
NCILTIYPY	9	Unmodified	_NCILTIYPY_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2584228515625	2	550.27826	1098.54197	-0.12177	-6.701E-05	-4.4638	-0.0024563	-4.5856	-0.0025233	550.2760143163204	63.734	0.45607	63.542	63.342	63.798	-0.19243					18	11	3	0	0	0	0.024374	1	7249	7249		49.442	0	1	239000			52915	7371	36900	36961	58227	58227					-0.003361350059549295
NCILTIYPY	9	Unmodified	_NCILTIYPY_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.27826	1098.54197	-0.38087	-0.00020959	-3.1333	-0.0017242	-3.5142	-0.0019338	550.2761658062133	63.679	0.5028	63.428	63.156	63.659	-0.25141	-0.078873	0.0004978	NaN	40.778	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458810			52916	7371	36900	36961							-0.003361350059549295
NCILTIYPY	9	Unmodified	_NCILTIYPY_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.27826	1098.54197	1.0977	0.00060402	-3.2979	-0.0018148	-2.2002	-0.0012107	550.2753213617264	63.448	0.53524	63.502	63.267	63.803	0.054104	-0.0047399	0.00031663	NaN	40.778	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364930			52917	7371	36900	36961							-0.003361350059549295
NCLDPCGDIT	10	2 Carbamidomethyl (C)	_NC(Carbamidomethyl (C))LDPC(Carbamidomethyl (C))GDIT_	NC(1)LDPC(1)GDIT		NC(67)LDPC(67)GDIT		0	2	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.73876953125	2	582.736631	1163.45871	-0.94751	-0.00055215	4.2331	0.0024668	3.2855	0.0019146	582.7389270539771	66.647	0.74976	66.402	65.891	66.64	-0.24517					52	22	4	0	0	0	0.69662	1	7627	7627		67.494	14.557	1	6967600	+		52918	36756	36901	36962	58228	58228	475;476				-0.11648239516102876
NCPIQKRNP	9	Unmodified	_NCPIQKRNP_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000443339.5_1_3:9475802-9506425:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.8297119140625	2	535.2822	1068.54985	-0.95895	-0.00051331	-3.033	-0.0016235	-3.9919	-0.0021368	535.2804769027131	34.66	0.61142	34.656	34.491	35.102	-0.0045624					20	15	2	0	0	0	0.024436	1	2585	2585		23.042	0	1	168780			52919	18490	36902	36963	58229	58229					0.018314370342068287
NCPKVPNSDQ	10	Unmodified	_NCPKVPNSDQ_					0	0	0		CON__ENSEMBL:ENSBTAP00000006074	CON__ENSEMBL:ENSBTAP00000006074	CON__ENSEMBL:ENSBTAP00000006074	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2962646484375	2	551.253305	1100.49206	-1.0091	-0.00055626	0.92448	0.00050962	-0.084609	-4.6641E-05	551.2536739511847	21.308	0.87073	21.308	20.949	21.819	0					57	17	5	0	0	0	0.03519	1	637	637		51.193	7.0759	1	465710		+	52920	482	36903	36964	58230	58230					-0.054168696818805984
NCRQSMIKY	9	Carbamidomethyl (C),Oxidation (M)	_NC(Carbamidomethyl (C))RQSM(Oxidation (M))IKY_	NC(1)RQSMIKY	NCRQSM(1)IKY	NC(120)RQSMIKY	NCRQSM(120)IKY	0	1	1			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.2798461914062	2	608.284082	1214.55361	-1.1642	-0.00070816	-4.3813	-0.0026651	-5.5455	-0.0033732	608.2816252593599	55.744	1.7564	55.529	54.639	56.395	-0.21551					108	47	4	0	0	0	0.072054	1	5989	5989		120.62	7.2094	1	2068900	+		52921	24719	36904	36965	58231	58231	323	733			-0.04508261254250101
NCSGRGEC	8	Unmodified	_NCSGRGEC_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.1507873535156	2	413.152537	824.290521	0.20177	8.3361E-05	-4.1988	-0.0017348	-3.9971	-0.0016514	413.15085158637027	81.548	1.0494	81.355	81.009	82.058	-0.19334					78	24	5	0	0	0	0.89627	1	9799	9799		51.335	8.861	1	1518100			52922	1876	36905	36966	58232	58232					-0.12865256919246804
NCSGRGEC	8	Unmodified	_NCSGRGEC_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	413.152537	824.290521	0.38137	0.00015756	-4.3137	-0.0017822	-3.9324	-0.0016247	413.15082210242423	81.258	0.85236	81.258	80.978	81.83	0	-0.074295	-0.00050086	NaN	51.335	42	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550120			52923	1876	36905	36966							-0.12865256919246804
NCSGRGEC	8	Unmodified	_NCSGRGEC_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	413.152537	824.290521	-0.25936	-0.00010715	-3.2976	-0.0013624	-3.557	-0.0014696	413.15106901202313	81.483	0.72929	81.352	81.015	81.744	-0.13075	0.020065	0.00033877	NaN	51.335	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577440			52924	1876	36905	36966							-0.12865256919246804
NCSGRGEC	8	Unmodified	_NCSGRGEC_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	413.152537	824.290521	-0.42899	-0.00017724	-3.3928	-0.0014017	-3.8218	-0.001579	413.15112341211443	81.301	0.89137	81.325	81.046	81.938	0.023911	-0.0070159	0.00026015	NaN	51.335	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557930			52925	1876	36905	36966							-0.12865256919246804
NCTLLLKTL	9	Unmodified	_NCTLLLKTL_					0	0	0		ENST00000591443.1_1_19:19230741-19231736:-|nuORF;ENST00000587406.5_1_19:19230741-19232328:-|nuORF;nc|ENSG00000064545|Q9NX61-2|TMEM161A;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	ENST00000591443.1_1_19:19230741-19231736:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8033752441406	2	509.801903	1017.58925	0.50937	0.00025968	3.0016	0.0015302	3.5109	0.0017899	509.8034490396054	85.103	3.1512	85.103	84.084	87.236	0					187	74	4	0	0	0	0.82115	1	10703	10703		37.812	2.1932	1	2754700			52926	1274	36906	36967	58233	58233					0.08116144265068215
NCYKSNSSM	9	Unmodified	_NCYKSNSSM_					0	0	0		ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.22119140625	2	517.207509	1032.40047	-0.96653	-0.0004999	1.5376	0.00079523	0.57102	0.00029534	517.208181153564	36.029	0.1703	36.067	35.962	36.133	0.038044					6	4	2	0	0	0	0.024292	1	2773	2773		58.782	18.004	1	29370			52927	4357	36907	36968	58234	58234					-0.11443876370708495
NDAELITVK	9	Unmodified	_NDAELITVK_					0	0	0			REV__ENSG00000104951|ENST00000391826|IL4I1	REV__ENSG00000104951|ENST00000391826|IL4I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2922668457031	2	501.776939	1001.53933	0.1356	6.8039E-05	-0.59354	-0.00029783	-0.45795	-0.00022979	501.77648093392844	55.94	1.07	55.94	55.39	56.46	0					52	29	3	0	0	0	0.024323	1	6211	6211		44.117	25.013	1	1255700	+		52928	21485	36908	36969	58235	58235					0.038617328607642776
NDARENINI	9	Unmodified	_NDARENINI_					0	0	0			REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2747802734375	2	529.764894	1057.51524	-0.52327	-0.00027721	-2.7604	-0.0014624	-3.2837	-0.0017396	529.7633983898118	46.932	0.47902	46.991	46.803	47.282	0.059097					18	12	2	0	0	0	0.024319	1	4613	4613		39.253	5.3312	1	154090	+		52929	23761	36909	36970	58236	58236					-0.011221075729281438
NDARENINI	9	Unmodified	_NDARENINI_					0	0	0			REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.764894	1057.51524	-0.23552	-0.00012477	-1.5198	-0.00080513	-1.7553	-0.0009299	529.7628429815584	47.069	0.59417	46.973	46.645	47.239	-0.096649	-0.037485	0.00084034	NaN	98.582	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376460	+		52930	23761	36909	36970							-0.011221075729281438
NDARENINI	9	Unmodified	_NDARENINI_					0	0	0			REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.764894	1057.51524	-0.21259	-0.00011262	-0.63879	-0.00033841	-0.85138	-0.00045103	530.2656686491124	47.363	0.54705	47.093	46.764	47.311	-0.26939	0.083013	0.0017738	NaN	98.582	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419550	+		52931	23761	36909	36970							-0.011221075729281438
NDARENINI	9	Unmodified	_NDARENINI_					0	0	0			REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.764894	1057.51524	-0.20611	-0.00010919	-1.7871	-0.00094675	-1.9932	-0.0010559	529.762463241911	47.108	0.70476	46.914	46.712	47.416	-0.19387	-0.095822	0.00055711	NaN	98.582	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328590	+		52932	23761	36909	36970							-0.011221075729281438
NDARLLSIP	9	Unmodified	_NDARLLSIP_					0	0	0			REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8961181640625	2	499.785099	997.555644	-1.1546	-0.00057704	-0.33415	-0.000167	-1.4887	-0.00074405	499.78471163578183	46.273	0.38837	46.121	45.989	46.378	-0.15156					16	10	2	0	0	0	0.024409	1	4553	4553		27.047	13.593	1	143270	+		52933	32996	36910	36971	58237	58237					0.05676858817525954
NDARLLSIP	9	Unmodified	_NDARLLSIP_					0	0	0			REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	REV__ENST00000465181.1_1_3:38175644-38175893:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.785099	997.555644	-0.056879	-2.8427E-05	-2.0609	-0.00103	-2.1177	-0.0010584	499.7840875392456	46.183	0.44286	46.234	45.932	46.375	0.051399	0.042979	-0.0011087	NaN	27.047	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104340	+		52934	32996	36910	36971							0.05676858817525954
NDDLVTSVSL	10	Unmodified	_NDDLVTSVSL_					0	0	0		ENSG00000256980|ENST00000370388|KHDC1L	ENSG00000256980|ENST00000370388|KHDC1L	ENSG00000256980|ENST00000370388|KHDC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3218383789062	2	531.769311	1061.52407	-0.62701	-0.00033342	-2.0458	-0.0010879	-2.6728	-0.0014213	531.7683717923483	67.387	0.44189	67.387	67.126	67.568	0					17	10	2	0	0	0	0.03519	1	8042	8042		25.574	1.0549	1	137050			52935	10912	36911	36972	58238	58238					-0.004231787270782661
NDDLYVVVE	9	Unmodified	_NDDLYVVVE_					0	0	0			REV__ENSG00000110713|ENST00000324932|NUP98	REV__ENSG00000110713|ENST00000324932|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7844848632812	2	533.258579	1064.50261	-0.55718	-0.00029712	-3.7116	-0.0019792	-4.2687	-0.0022763	533.2552267033553	45.563	0.71294	45.607	45.311	46.024	0.043877					40	20	3	0	0	0	0.022587	1	4402	4402		74.255	0	1	800340	+		52936	21869	36912	36973	58239	58239					-0.02706563755782554
NDDPRGIF	8	Unmodified	_NDDPRGIF_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.2162780761719	2	467.224874	932.435195	-1.1908	-0.00055639	-1.6723	-0.00078136	-2.8632	-0.0013378	467.22238091204787	25.844	0.21016	25.678	25.585	25.795	-0.16612					6	4	2	0	0	0	0.027866	1	1225	1225		17.365	0	1	31625			52937	7239	36913	36974	58240	58240					-0.03372549176094708
NDDQMQLRIP	10	Unmodified	_NDDQMQLRIP_					0	0	0			REV__ENSG00000101265|ENST00000379400|RASSF2	REV__ENSG00000101265|ENST00000379400|RASSF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.535400390625	3	410.536283	1228.58702	0.41618	0.00017086	-3.7886	-0.0015553	-3.3724	-0.0013845	410.5347967564159	47.475	0.763	47.206	46.908	47.671	-0.26939					37	20	3	0	0	0	1.0275	1	4639	4639		42.338	2.4649	1	2568200	+		52938	21210	36914	36975	58241	58241					-0.018129362106947156
NDEARQQQM	9	Unmodified	_NDEARQQQM_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-4|NEK1	REV__nc|ENSG00000137601|Q96PY6-4|NEK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.3241577148438	2	560.246012	1118.47747	-0.091204	-5.1097E-05	4.0892	0.002291	3.998	0.0022399	560.2481264582643	68.108	0.19256	67.82	67.748	67.94	-0.28835					8	4	3	0	0	0	0.024511	1	8135	8135		40.778	15.328	1	111130	+		52939	23770	36915	36976	58242	58242					-0.07702941830029886
NDEAWPQL	8	Unmodified	_NDEAWPQL_					0	0	0			REV__ENSG00000115297|ENST00000233638|TLX2	REV__ENSG00000115297|ENST00000233638|TLX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7969055175781	2	486.724707	971.43486	-0.19056	-9.2749E-05	0.16739	8.1475E-05	-0.023165	-1.1275E-05	486.7246784377326	59.965	0.73897	59.765	59.393	60.132	-0.20016					36	19	2	0	0	0	0.027866	1	6788	6788		45.972	0	1	409050	+		52940	22188	36916	36977	58243	58243					-0.051999688959540435
NDEDKQKTL	9	Unmodified	_NDEDKQKTL_					0	0	0		ENST00000448737.1_1_X:123338433-123338700:-|nuORF	ENST00000448737.1_1_X:123338433-123338700:-|nuORF	ENST00000448737.1_1_X:123338433-123338700:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7826538085938	2	545.772385	1089.53022	-2.0272	-0.0011064	-1.2699	-0.00069308	-3.2971	-0.0017994	545.7727537150635	38.777	0.11626	38.804	38.731	38.847	0.027275					4	2	2	0	0	0	0.024447	1	3220	3220		40.778	11.629	1	14171			52941	14485	36917	36978	58244	58244					-0.010966604955683579
NDEGLINKKL	10	Unmodified	_NDEGLINKKL_					0	0	0		nc|ENSG00000153558|Q9UKC9-2|FBXL2;ENSG00000153558|ENST00000484457|FBXL2;ENST00000497411.5_1_3:33319004-33339218:+|nuORF;ENST00000283627.10_1_3:33319004-33400787:+|nuORF;ENST00000483037.5_1_3:33319849-33342019:+|nuORF	nc|ENSG00000153558|Q9UKC9-2|FBXL2	nc|ENSG00000153558|Q9UKC9-2|FBXL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.3192749023438	2	572.322045	1142.62954	-0.42948	-0.0002458	-1.078	-0.00061695	-1.5074	-0.00086274	572.319145605198	77.018	0.60886	76.851	76.483	77.092	-0.16675					53	14	5	0	0	0	0.75651	1	9154	9154		63.534	10.597	1	1022500			52942	6349	36918	36979	58245	58245					0.06392782189186619
NDENQMFC	8	Unmodified	_NDENQMFC_					0	0	0		nc|ENSG00000249961|Q8NA31-3|TERB1;nc|ENSG00000249961|Q8NA31-2|TERB1;ENSG00000249961|ENST00000433154|TERB1	nc|ENSG00000249961|Q8NA31-3|TERB1	nc|ENSG00000249961|Q8NA31-3|TERB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3134460449219	2	500.678585	999.342616	-0.21421	-0.00010725	1.4701	0.00073603	1.2559	0.00062879	500.679670712631	76.317	0.12001	76.049	75.968	76.088	-0.26806					4	2	2	0	0	0	0.027866	1	9043	9043		20.482	11.299	1	19897			52943	10845	36919	36980	58246	58246					-0.1570813829613371
NDFDFVLL	8	Unmodified	_NDFDFVLL_					0	0	0			REV__ENSG00000144362|ENST00000359744|PHOSPHO2	REV__ENSG00000144362|ENST00000359744|PHOSPHO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.3137512207031	2	491.74765	981.480748	-0.37063	-0.00018226	-4.3875	-0.0021575	-4.7581	-0.0023398	491.74579383506034	29.205	0.51808	29.033	28.766	29.284	-0.17258					14	11	2	0	0	0	0.027866	1	1737	1737		85.359	16.875	1	48700	+		52944	24329	36920	36981	58247	58247					-0.010733237136946627
NDFDFVLL	8	Unmodified	_NDFDFVLL_					0	0	0			REV__ENSG00000144362|ENST00000359744|PHOSPHO2	REV__ENSG00000144362|ENST00000359744|PHOSPHO2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.74765	981.480748	-1.4335	-0.0007049	-0.85253	-0.00041923	-2.286	-0.0011241	491.7464939243354	29.312	0.4758	29.067	28.881	29.357	-0.24524	0.042575	0.00201	NaN	85.359	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35962	+		52945	24329	36920	36981							-0.010733237136946627
NDFKYGLLPES	11	Unmodified	_NDFKYGLLPES_					0	0	0		nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;ZBTB10|p.K777Nfs*13|1|0.24|ENSG00000205189|chr8:80519238-80519238|A/-|frameshift_variant;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	nc|ENSG00000205189|Q96DT7-4|ZBTB10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.216552734375	3	428.215316	1281.62412	-0.16189	-6.9326E-05	3.1551	0.001351	2.9932	0.0012817	428.2165097294145	29.92	1.368	29.676	28.754	30.122	-0.24415					58	31	3	0	0	0	1.044	1	1874	1874		26.75	1.6819	1	956210			52946	10409	36921	36982	58248	58248					-0.005429413932688476
NDFNSIQTTLS	11	Unmodified	_NDFNSIQTTLS_					0	0	0			REV__ENSG00000137252|ENST00000370862|HCRTR2	REV__ENSG00000137252|ENST00000370862|HCRTR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.9264831542969	3	413.866575	1238.5779	0.19869	8.2231E-05	0.96525	0.00039949	1.1639	0.00048172	413.86665290803984	31.498	0.57632	31.498	31.173	31.749	0					17	13	2	0	0	0	0.024746	1	2066	2066		26.75	12.056	1	43326	+		52947	23740	36922	36983	58249	58249					-0.0318500629537084
NDGFSSYLLDI	11	Unmodified	_NDGFSSYLLDI_					0	0	0		ENST00000488673.6_1_9:37763841-37777701:+|nuORF;nc|ENSG00000165275|Q6PF06-2|TRMT10B;nc|ENSG00000165275|Q6PF06-4|TRMT10B;ENSG00000165275|ENST00000297994|TRMT10B	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2120666503906	3	415.199554	1242.57683	-0.57247	-0.00023769	0.16903	7.018E-05	-0.40344	-0.00016751	415.19944090559875	27.661	0.18709	27.743	27.608	27.795	0.081293					6	4	2	0	0	0	0.02473	1	1471	1471		26.75	14.317	1	155770			52948	7390	36923	36984	58250	58250					-0.034752206642679084
NDGLSSPDET	10	Unmodified	_NDGLSSPDET_					0	0	0		nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1;nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	nc|ENSG00000168060|Q9UQQ1-5|NAALADL1	nc|ENSG00000168060|Q9UQQ1-5|NAALADL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8271484375	2	517.717276	1033.42	-0.26583	-0.00013763	0.7079	0.00036649	0.44207	0.00022887	517.7175654870551	35.038	0.35753	34.826	34.642	35	-0.21246					13	8	2	0	0	0	0.03519	1	2626	2626		33.922	1.1092	1	81302			52949	7778	36924	36985	58251	58251					-0.09537505554612835
NDGVLIISL	9	Unmodified	_NDGVLIISL_					0	0	0			REV__nc|ENSG00000163738|Q9H903-5|MTHFD2L	REV__nc|ENSG00000163738|Q9H903-5|MTHFD2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.28839111328125	2	472.276575	942.538597	0.032288	1.5249E-05	0.26414	0.00012475	0.29643	0.00014	472.2764482127968	93.786	0.40739	93.784	93.582	93.99	-0.0026321					17	9	2	0	0	0	0.024427	1	11911	11911		26.693	0	1	203050	+		52950	25627	36925	36986	58252	58252					0.06502938211735909
NDGWIAFY	8	Unmodified	_NDGWIAFY_					0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2982177734375	2	493.224342	984.434132	-0.85647	-0.00042243	2.0397	0.001006	1.1832	0.00058361	493.22531781782914	60.9	0.47097	60.724	60.443	60.914	-0.1761					17	11	2	0	0	0	0.027866	1	6758	6758		14.664	0	1	256590	+		52951	23481	36926	36987	58253	58253					-0.05870763544999136
NDIHEDNL	8	Unmodified	_NDIHEDNL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3131103515625	2	485.217246	968.419939	-0.72788	-0.00035318	-4.1963	-0.0020361	-4.9242	-0.0023893	485.2150347761412	40.164	1.2336	40.051	39.114	40.347	-0.11223					49	33	2	0	0	0	0.027866	1	3523	3523		68.787	29.981	1	137500			52952	1458	36927	36988	58254	58254					-0.06553460763950625
NDISPLEN	8	Unmodified	_NDISPLEN_					0	0	0		ENSG00000160191|ENST00000291539|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;ENST00000489319.5_1_21:44178904-44195400:+|nuORF;nc|ENSG00000160191|O76083-5|PDE9A;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-10|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.250732421875	2	451.216714	900.418876	-0.86104	-0.00038852	1.8554	0.00083718	0.99434	0.00044866	451.217814136275	35.62	0.40083	35.598	35.308	35.709	-0.021767					16	9	2	0	0	0	0.027866	1	2702	2702		15.642	0	1	52014			52953	6787	36928	36989	58255	58255					-0.03531675132842338
NDITSILR	8	Unmodified	_NDITSILR_					0	0	0		ENST00000494539.5_1_2:55402928-55459402:-|nuORF;nc|ENSG00000162994|Q8NHS4-2|CLHC1;ENSG00000162994|ENST00000401408|CLHC1	ENST00000494539.5_1_2:55402928-55459402:-|nuORF	ENST00000494539.5_1_2:55402928-55459402:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.802978515625	2	466.263999	930.513445	-1.2006	-0.00055982	1.5032	0.00070087	0.30253	0.00014106	466.26483586952827	28.989	0.3895	28.744	28.578	28.967	-0.24524					14	8	2	0	0	0	0.027866	1	1735	1735		26.693	0	1	109260			52954	7021	36929	36990	58256	58256					0.04540883409151775
NDIWRYNE	8	Unmodified	_NDIWRYNE_					0	0	0		ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.3242797851562	2	555.254163	1108.49377	0.051925	2.8832E-05	1.3931	0.00077353	1.445	0.00080236	555.2542836898617	50.272	0.60103	50.166	49.856	50.457	-0.10558					28	15	3	0	0	0	0.027866	1	5144	5144		29.15	0	1	549540			52955	6578	36930	36991	58257	58257					-0.056134926016284226
NDKHACRFP	9	Unmodified	_NDKHACRFP_					0	0	0			REV__ZNF827|p.R413H|1|0.4|ENSG00000151612|chr4:145892271-145892271|C/T|missense_variant	REV__ZNF827|p.R413H|1|0.4|ENSG00000151612|chr4:145892271-145892271|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3212890625	2	544.258725	1086.5029	1.4658	0.00079778	2.0524	0.001117	3.5182	0.0019148	544.258944424645	24.429	0.25787	24.248	24.072	24.329	-0.18089					7	5	2	0	0	0	0.024506	1	1029	1029		16.473	0	1	23243	+		52956	37824	36931	36992	58258	58258					-0.03689422516936247
NDKHLKMLHPC	11	Carbamidomethyl (C)	_NDKHLKMLHPC(Carbamidomethyl (C))_	NDKHLKMLHPC(1)		NDKHLKMLHPC(41)		0	1	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MSMS	OPSCC_40_ClassI_Rep-2	5	464.9007873535156	3	464.90068	1391.68021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.472	1	20.276	19.776	20.776	-0.19577								0	0	0	1.0439	1	543	543		41.08	11.529	1		+		52957	22693	36932	36993	58259	58259	298				3.6649709045377676E-05
NDKKEEFDVS	10	Unmodified	_NDKKEEFDVS_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5599365234375	3	404.191059	1209.55135	0.44891	0.00018145	1.6705	0.00067521	2.1194	0.00085666	404.19158840929265	33.586	0.30798	33.385	33.286	33.594	-0.20019					13	7	2	0	0	0	0.03519	1	2406	2406		13.508	0	1	96090			52958	10589	36933	36994	58260	58260					-0.045046951867107055
NDKPLLLR	8	Unmodified	_NDKPLLLR_					0	0	0			REV__nc|ENSG00000048740|O95319-3|CELF2	REV__nc|ENSG00000048740|O95319-3|CELF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7982482910156	2	484.798009	967.581465	0.11867	5.753E-05	-1.1117	-0.00053896	-0.99305	-0.00048143	484.7976554584649	58.741	1.6893	58.833	58.297	59.986	0.091217					126	45	4	0	0	0	0.93274	1	6665	6665		47.916	0.25827	1	93907000	+		52959	36454	36934	36995	58261	58261					0.09637753059803345
NDKTKRPV	8	Unmodified	_NDKTKRPV_					0	0	0		nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	nc|ENSG00000113360|Q9NRR4-2|DROSHA	MSMS	OPSCC_40_ClassI_Rep-1	4	479.2773132324219	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.436	1	86.249	85.749	86.749	-0.18696								0	0	0	0.7608	1	10484	10484		37.159	0	1				52960	3284	36935	36996	58262	58262					0.060319920203255606
NDKTMAREV	9	Unmodified	_NDKTMAREV_					0	0	0			REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF	REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3087158203125	2	532.263673	1062.51279	-0.1236	-6.5787E-05	3.7843	0.0020142	3.6607	0.0019484	532.2654217426742	36.962	2.164	36.769	35.73	37.894	-0.193					123	54	3	0	0	0	0.024418	1	3108	3108		30.318	3.6248	1	775410	+		52961	32615	36936	36997	58263	58263					-0.015962793022254118
NDKTMAREV	9	Unmodified	_NDKTMAREV_					0	0	0			REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF	REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.263673	1062.51279	-0.90912	-0.00048389	4.2549	0.0022648	3.3458	0.0017809	532.265816527459	36.859	2.1896	36.642	35.646	37.836	-0.21756	-0.062619	0.00057111	NaN	23.523	99	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	740140	+		52962	32615	36936	36997							-0.015962793022254118
NDKTQLIF	8	Unmodified	_NDKTQLIF_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.7452087402344	2	489.766374	977.518196	-0.2223	-0.00010888	-1.4355	-0.00070307	-1.6578	-0.00081195	489.7658378637326	42.793	0.22582	42.567	42.41	42.636	-0.22597					10	5	3	0	0	0	0.027866	1	3855	3855		29.15	0	1	226490			52963	6319	36937	36998	58264	58264					0.028537675519146433
NDKTRKAM	8	Unmodified	_NDKTRKAM_					0	0	0			REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2688293457031	2	482.255651	962.496749	0.079311	3.8248E-05	-2.4051	-0.0011598	-2.3257	-0.0011216	482.2544303545986	30.798	1.2356	30.646	30.298	31.534	-0.15231					58	30	2	0	0	0	0.027866	1	2015	2015		44.377	12.422	1	2628500	+		52964	27240	36938	36999	58265	58265					0.014000592515458266
NDKYGRKV	8	Unmodified	_NDKYGRKV_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.3186950683594	2	490.269616	978.524678	-0.43454	-0.00021304	0.69645	0.00034145	0.2619	0.0001284	490.26977014112	29.279	0.68203	29.106	28.893	29.575	-0.17258					20	15	2	0	0	0	0.027866	1	1831	1831		45.952	1.8352	1	91618			52965	1691	36939	37000	58266	58266					0.03455705503290574
NDLAELRA	8	Unmodified	_NDLAELRA_					0	0	0		ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7670593261719	2	451.240524	900.466495	-0.19215	-8.6706E-05	-0.0063138	-2.849E-06	-0.19846	-8.9555E-05	451.24041373895085	35.583	0.39507	35.368	35.176	35.571	-0.21555					16	9	2	0	0	0	0.027866	1	2687	2687		25.574	4.6271	1	319520			52966	10618	36940	37001	58267	58267					0.012280238579933211
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.29052734375	2	567.268424	1132.5223	0.45662	0.00025903	0.57015	0.00032343	1.0268	0.00058246	567.2687590839004	59.456	1.035	59.456	59.108	60.143	0					38	27	2	0	0	0	0.03519	1	6806	6806		47.96	18.81	1	191150			52967	7449	36941	37002	58268	58268					-0.038665110166903105
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.2900390625	2	567.268424	1132.5223	-0.018659	-1.0585E-05	0.28094	0.00015937	0.26228	0.00014878	567.2685762007036	58.113	1.4846	57.938	57.859	59.343	-0.1749					74	40	2	0	0	0	0.03519	1	6733	6733		35.152	9.578	1	430040			52968	7449	36941	37002	58269	58269					-0.038665110166903105
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.2902221679688	2	567.268424	1132.5223	-0.38002	-0.00021557	2.3565	0.0013368	1.9765	0.0011212	567.2698127530698	60.265	0.85217	60.065	59.318	60.17	-0.20016					31	22	2	0	0	0	0.03519	1	6774	6774		51.193	15.574	1	118320			52969	7449	36941	37002	58270	58270					-0.038665110166903105
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2904663085938	2	567.268424	1132.5223	-0.60318	-0.00034217	0.57411	0.00032567	-0.029076	-1.6494E-05	567.2685190130386	59.424	0.37666	59.51	59.241	59.617	0.085682					14	9	2	0	0	0	0.03519	1	6711	6711		51.193	14.746	1	112060			52970	7449	36941	37002	58271	58271					-0.038665110166903105
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.268424	1132.5223	0.12955	7.3487E-05	2.6091	0.0014801	2.7387	0.0015536	567.2699406460479	60.278	0.6378	60.08	59.874	60.512	-0.19742	-0.03053	-0.00024795	NaN	69.628	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345770			52971	7449	36941	37002							-0.038665110166903105
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.268424	1132.5223	0.26681	0.00015135	5.1423	0.002917	5.4091	0.0030684	567.2716246027699	59.958	0.14476	59.782	59.704	59.849	-0.1761	0.19956	0.0044719	NaN	60.118	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66803			52972	7449	36941	37002							-0.038665110166903105
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.268424	1132.5223	-0.44407	-0.00025191	2.9863	0.0016941	2.5423	0.0014421	567.269860414112	60.316	0.63629	60.14	59.885	60.521	-0.1761	0.028897	0.00017999	NaN	69.628	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289180			52973	7449	36941	37002							-0.038665110166903105
NDLDPGFMPK	10	Unmodified	_NDLDPGFMPK_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	567.268424	1132.5223	-0.51811	-0.00029391	3.1358	0.0017789	2.6177	0.001485	567.2700541382713	60.412	0.86624	60.159	59.831	60.697	-0.25373	0.04756	0.00034962	NaN	69.628	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299550			52974	7449	36941	37002							-0.038665110166903105
NDLEELLQ	8	Unmodified	_NDLEELLQ_					0	0	0			REV__ENSG00000174276|ENST00000310597|ZNHIT2	REV__ENSG00000174276|ENST00000310597|ZNHIT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79656982421875	2	487.245472	972.476391	-0.20018	-9.7538E-05	-1.0127	-0.00049342	-1.2129	-0.00059096	487.24455097863	59.156	1.0565	59.242	58.813	59.869	0.085686					33	28	2	0	0	0	0.027866	1	6695	6695		47.657	18.508	1	206680	+		52975	26848	36942	37003	58272	58272					-0.01094832927265088
NDLEVSKIQ	9	Unmodified	_NDLEVSKIQ_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2992553710938	2	523.279846	1044.54514	-0.74061	-0.00038755	1.4923	0.00078091	0.75172	0.00039336	523.2805508091809	51.982	1.2436	52.074	51.582	52.826	0.091938					48	32	3	0	0	0	0.016885	1	5470	5470		131.03	24.348	1	1053700			52976	4948	36943	37004	58273	58273					0.02464831372435583
NDLGDMLALL	10	Unmodified	_NDLGDMLALL_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3272705078125	2	537.778625	1073.5427	-0.70427	-0.00037874	-1.9195	-0.0010323	-2.6238	-0.001411	537.7772441140675	82.679	0.38628	82.679	82.449	82.835	0					11	8	2	0	0	0	0.03519	1	10325	10325		67.494	26.921	1	79011	+		52977	22489	36944	37005	58274	58274					0.008866596431289508
NDLKKKALL	9	Unmodified	_NDLKKKALL_					0	0	0		ENST00000512594.5_1_4:7968719-8022199:-|nuORF;nc|ENSG00000163995|Q6H8Q1-4|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2	ENST00000512594.5_1_4:7968719-8022199:-|nuORF	ENST00000512594.5_1_4:7968719-8022199:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8345336914062	2	521.834591	1041.65463	-0.57935	-0.00030232	-0.0052191	-2.7235E-06	-0.58457	-0.00030505	521.834532631446	69.308	1.0601	69.323	68.974	70.034	0.015129					68	26	3	0	0	0	0.6238	2	8280	8269;8280		51.193	1.972	1	4382800			52978	7186	36945	37006	58275;58276	58276					0.13546881782417586
NDLNLKKS	8	Unmodified	_NDLNLKKS_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.5854187011719	2	466.263999	930.513445	-0.13932	-6.4959E-05	-0.054175	-2.526E-05	-0.19349	-9.0218E-05	466.2638811823538	46.218	0.45932	46.218	45.953	46.412	0					22	12	2	0	0	0	0.027866	1	4577	4577		18.262	6.7511	1	348410			52979	2053	36946	37007	58277	58277					0.04540883409140406
NDLNLKKS	8	Unmodified	_NDLNLKKS_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.263999	930.513445	-0.94722	-0.00044165	0.98185	0.0004578	0.034629	1.6146E-05	466.2643542221784	46.307	0.42397	46.155	45.92	46.344	-0.15156	0.046099	-0.0014747	NaN	12.812	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306600			52980	2053	36946	37007							0.04540883409140406
NDLRLHQP	8	Unmodified	_NDLRLHQP_					0	0	0			REV__ENSG00000147155|ENST00000495186|EBP	REV__ENSG00000147155|ENST00000495186|EBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.295166015625	2	496.76724	991.519927	0.066629	3.3099E-05	1.431	0.00071086	1.4976	0.00074396	496.7678613821091	41.462	0.41463	41.338	41.086	41.5	-0.12317					18	11	2	0	0	0	0.027866	1	3680	3680		58.782	12.83	1	593060	+		52981	24532	36947	37008	58278	58278					0.023828213605156634
NDLRNDVTV	9	Unmodified	_NDLRNDVTV_					0	0	0			REV__ENSG00000165724|ENST00000298585|ZMYND19	REV__ENSG00000165724|ENST00000298585|ZMYND19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2977294921875	2	523.26727	1044.51999	-0.61563	-0.00032214	-2.0045	-0.0010489	-2.6202	-0.0013711	523.2661878333793	51.961	0.14074	51.961	51.836	51.977	0					5	3	2	0	0	0	0.024344	1	5533	5533		45.972	5.1941	1	100880	+		52982	25921	36948	37009	58279	58279					-0.0004922343014186481
NDLSLLELEW	10	Unmodified	_NDLSLLELEW_					0	0	0		ENSG00000126231|ENST00000375547|PROZ;nc|ENSG00000126231|P22891-2|PROZ	ENSG00000126231|ENST00000375547|PROZ	ENSG00000126231|ENST00000375547|PROZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.2128601074219	3	411.211683	1230.61322	-0.74708	-0.00030721	1.4962	0.00061527	0.74915	0.00030806	411.2122416172772	44.343	1.1186	44.239	43.96	45.079	-0.10468					68	29	4	0	0	0	0.86089	1	4141	4141		56.632	3.0354	1	3409200			52983	4186	36949	37010	58280	58280					0.007136562324149054
NDLSVGYIL	9	Unmodified	_NDLSVGYIL_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3133850097656	2	497.266207	992.517862	-0.33342	-0.0001658	1.0072	0.00050087	0.67383	0.00033507	497.2665270848014	73.648	0.54869	73.383	73.099	73.647	-0.26479					32	13	3	0	0	0	0.024325	1	8700	8700		40.573	5.3719	1	318420			52984	10376	36950	37011	58281	58281					0.02130347832053303
NDLSVGYIL	9	Unmodified	_NDLSVGYIL_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.3132019042969	2	497.266207	992.517862	-0.40405	-0.00020092	0.48049	0.00023893	0.076444	3.8013E-05	497.26627643813384	73.478	0.47619	73.287	73.085	73.561	-0.19026					31	11	3	0	0	0	0.024412	1	8629	8629		31.955	1.4512	1	312420			52985	10376	36950	37011	58282	58282					0.02130347832053303
NDLSVGYIL	9	Unmodified	_NDLSVGYIL_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.266207	992.517862	-0.11183	-5.561E-05	-2.1485	-0.0010684	-2.2604	-0.001124	497.26539936125454	73.397	0.25549	73.397	73.182	73.438	0	0.031591	-0.0027197	NaN	24.203	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80735			52986	10376	36950	37011							0.02130347832053303
NDLWVRIEDS	10	Unmodified	_NDLWVRIEDS_					0	0	0		ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.89459228515625	3	416.206932	1245.59897	0.10367	4.3147E-05	-2.5959	-0.0010804	-2.4923	-0.0010373	416.20583464276496	29.677	0.67146	29.527	29.296	29.967	-0.14952					21	15	2	0	0	0	0.03519	1	1876	1876		32.751	6.6872	1	53047			52987	10994	36951	37012	58283	58283					-0.014009961958663553
NDLYKQLLA	9	Unmodified	_NDLYKQLLA_					0	0	0			REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.28857421875	2	539.300581	1076.58661	-0.90622	-0.00048872	-1.3979	-0.00075389	-2.3041	-0.0012426	539.2997485992762	53.295	0.3405	53.105	52.868	53.208	-0.18982					11	8	2	0	0	0	0.024527	1	5577	5577		31.53	8.4873	1	105430	+		52988	20003	36952	37013	58284	58284					0.05138012131783398
NDNENDTSY	9	Unmodified	_NDNENDTSY_					0	0	0		ENSG00000165392|ENST00000298139|WRN;WRN|p.L690*|1|0.52|ENSG00000165392|chr8:31100933-31100933|C/-|frameshift_variant	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.304931640625	2	536.196707	1070.37886	-0.30547	-0.00016379	-2.9819	-0.0015989	-3.2874	-0.0017627	536.1949552238673	48.015	0.15206	47.828	47.749	47.902	-0.18684					5	3	2	0	0	0	0.024541	1	4737	4737		5.5578	0	1	38084			52989	7409	36953	37014	58285	58285					-0.1535126659407524
NDNNLLLR	8	Unmodified	_NDNNLLLR_					0	0	0			REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	REV__ENST00000485542.5_1_1:113162466-113192092:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.76483154296875	2	486.267073	970.519593	0.073588	3.5784E-05	-3.8549	-0.0018745	-3.7813	-0.0018387	486.26492422389407	99.092	0.61954	99.102	98.693	99.312	0.010239					19	13	2	0	0	0	0.027866	1	12647	12647		38.806	4.6336	1	65563	+		52990	19246	36954	37015	58286	58286					0.033154016406683695
NDNTYYAMKVL	11	Unmodified	_NDNTYYAMKVL_					0	0	0		nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;nc|ENSG00000110931|Q96RR4-7|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2	nc|ENSG00000110931|Q96RR4-6|CAMKK2	nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.18878173828125	3	444.548189	1330.62274	-0.5107	-0.00022703	3.7389	0.0016621	3.2282	0.0014351	444.54964884434264	33.118	0.99324	32.953	32.679	33.672	-0.16565					54	24	3	0	0	0	0.024747	1	2332	2332		7.6794	0	1	1057900			52991	3077	36955	37016	58287	58287					-0.029348987536877758
NDNVPEIL	8	Unmodified	_NDNVPEIL_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.8049011230469	2	457.234907	912.455261	-0.6217	-0.00028426	2.1749	0.00099444	1.5532	0.00071018	457.2357578940912	22.351	1.0635	22.165	21.906	22.969	-0.18539					45	22	4	0	0	0	0.027866	1	869	869		27.882	0	1	668530			52992	10959	36956	37017	58288	58288					-0.004467982361234135
NDNVTRGFGSV	11	Unmodified	_NDNVTRGFGSV_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E;REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E;REV__KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant	REV__nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.3033447265625	2	583.283451	1164.55235	-0.67133	-0.00039157	-4.374	-0.0025513	-5.0453	-0.0029429	583.2809293347862	64.901	0.39666	64.667	64.452	64.849	-0.2345					13	9	2	0	0	0	0.02474	1	7399	7399		32.751	5.7032	1	194910	+		52993	36427;19808;36193	36957	37018	58289	58289					-0.02334436027126685
NDPDAEVW	8	Unmodified	_NDPDAEVW_					0	0	0		ENSG00000187824|ENST00000341871|TMEM220	ENSG00000187824|ENST00000341871|TMEM220	ENSG00000187824|ENST00000341871|TMEM220	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3000793457031	2	473.201064	944.387576	0.42886	0.00020294	3.1004	0.0014671	3.5292	0.00167	473.20238532884076	19.616	0.92144	19.455	19.233	20.154	-0.16079					35	18	3	0	0	0	0.027866	1	515	515		40.573	15.122	1	336980			52994	9665	36958	37019	58290	58290					-0.08684248166946418
NDPEIIKAQ	9	Unmodified	_NDPEIIKAQ_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3170166015625	2	514.274564	1026.53457	-0.77752	-0.00039986	-0.52575	-0.00027038	-1.3033	-0.00067024	514.2732996889638	32.225	0.50352	32.288	31.961	32.465	0.062885					18	12	3	0	0	0	0.024511	1	2185	2185		25.574	3.6142	1	65911	+		52995	28678	36959	37020	58291	58291					0.022368487180074226
NDPEIIKAQ	9	Unmodified	_NDPEIIKAQ_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.274564	1026.53457	-0.15395	-7.9174E-05	0.52906	0.00027208	0.37511	0.00019291	514.2732180578048	32.578	0.2477	32.341	32.13	32.378	-0.23666	-0.00036181	0.00035775	NaN	19.104	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23636	+		52996	28678	36959	37020							0.022368487180074226
NDPFSYVY	8	Unmodified	_NDPFSYVY_					0	0	0			REV__ENST00000472654.1_1_X:48933860-48934482:-|nuORF	REV__ENST00000472654.1_1_X:48933860-48934482:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.738037109375	2	502.721633	1003.42871	-0.3783	-0.00019018	-2.2367	-0.0011244	-2.615	-0.0013146	502.72077357224504	36.282	0.44352	36.077	35.919	36.363	-0.20518					17	11	3	0	0	0	0.027866	1	2854	2854		31.955	13.63	1	374730	+		52997	28250	36960	37021	58292	58292					-0.07286487127464625
NDPKEVKTI	9	Unmodified	_NDPKEVKTI_					0	0	0			REV__ENSG00000182271|ENST00000328886|TMIGD1	REV__ENSG00000182271|ENST00000328886|TMIGD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2717895507812	2	522.290214	1042.56587	-0.27597	-0.00014414	2.1876	0.0011425	1.9116	0.00099841	522.2917452498156	42.537	0.4788	42.404	42.049	42.528	-0.13219					20	13	2	0	0	0	0.022411	1	3878	3878		113.41	51.304	1	243060	+		52998	27465	36961	37022	58293	58293					0.046294217521108294
NDPRRIVQ	8	Unmodified	_NDPRRIVQ_					0	0	0			REV__ENST00000572218.5_2_17:44109587-44110490:-|nuORF	REV__ENST00000572218.5_2_17:44109587-44110490:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7669677734375	2	499.280515	996.546476	0.42893	0.00021416	2.1924	0.0010946	2.6214	0.0013088	499.2810460131506	42.104	0.33345	42.104	41.888	42.222	0					13	9	2	0	0	0	0.027866	1	3814	3814		37.159	0	1	143610	+		52999	35421	36962	37023	58294	58294					0.04806510251853524
NDQHEDVASGP	11	Unmodified	_NDQHEDVASGP_					0	0	0			REV__KIAA1522|p.H58Tfs*24|1|0.53|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant	REV__KIAA1522|p.H58Tfs*24|1|0.53|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.8377075195312	2	584.746899	1167.47924	-1.5818	-0.00092497	0.53955	0.0003155	-1.0423	-0.00060947	584.7470353384475	52.976	0.40504	52.976	52.827	53.232	0					14	10	2	0	0	0	0.024787	1	5689	5689		41.427	11.109	1	95821	+		53000	25452	36963	37024	58295	58295					-0.09779609540419187
NDQHEDVASGP	11	Unmodified	_NDQHEDVASGP_					0	0	0			REV__KIAA1522|p.H58Tfs*24|1|0.53|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant	REV__KIAA1522|p.H58Tfs*24|1|0.53|ENSG00000162522|chr1:32767894-32767894|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	584.8377685546875	2	584.746899	1167.47924	-1.4611	-0.00085436	1.2973	0.0007586	-0.16377	-9.5762E-05	584.7472104177783	53.137	0.29878	52.99	52.797	53.096	-0.14723					13	7	2	0	0	0	0.024774	1	5677	5677		38.754	12.061	1	96018	+		53001	25452	36963	37024	58296	58296					-0.09779609540419187
NDQLEVTDV	9	Unmodified	_NDQLEVTDV_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.7465209960938	2	516.745836	1031.47712	-0.053939	-2.7873E-05	1.2337	0.0006375	1.1797	0.00060963	516.7464349494439	24.059	1.2096	23.844	23.554	24.764	-0.2151					54	27	3	0	0	0	0.70156	1	1038	1038		45.972	1.8554	1	2143000	+		53002	28454	36964	37025	58297	58297					-0.03736038278248088
NDQLEVTDV	9	Unmodified	_NDQLEVTDV_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7466430664062	2	516.745836	1031.47712	-0.066309	-3.4265E-05	1.2347	0.00063802	1.1684	0.00060376	516.7463634690299	23.947	0.85864	23.767	23.519	24.378	-0.17989					56	19	5	0	0	0	0.56934	1	1000	1000		54.776	4.7518	1	2359600	+		53003	28454	36964	37025	58298	58298					-0.03736038278248088
NDQMIDILS	9	Unmodified	_NDQMIDILS_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2872924804688	2	524.752607	1047.49066	-0.49021	-0.00025724	4.3606	0.0022882	3.8704	0.002031	524.7550584363364	27.847	0.63811	27.602	27.204	27.842	-0.24433					22	14	2	0	0	0	0.022587	1	1586	1586		74.255	28.283	1	93616			53004	8335	36965	37026	58299	58299					-0.031185037706336516
NDRLFRSP	8	Unmodified	_NDRLFRSP_					0	0	0			REV__ENST00000560108.5_2_15:34470139-34502204:-|nuORF	REV__ENST00000560108.5_2_15:34470139-34502204:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7801208496094	2	502.76724	1003.51993	-0.038406	-1.9309E-05	-4.247	-0.0021352	-4.2854	-0.0021545	502.7635691957103	53.355	0.56887	53.228	52.833	53.402	-0.12705					32	14	4	0	0	0	0.027866	1	5579	5579		14.865	0	1	232000	+		53005	35135	36966	37027	58300	58300					0.0183082136052235
NDRSAPLL	8	Unmodified	_NDRSAPLL_					0	0	0		ENSG00000175866|ENST00000428708|BAIAP2	ENSG00000175866|ENST00000428708|BAIAP2	ENSG00000175866|ENST00000428708|BAIAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2591247558594	2	443.243067	884.47158	-0.34162	-0.00015142	1.1934	0.00052895	0.85174	0.00037753	443.2431033927225	23.641	0.46679	23.641	23.399	23.866	0					29	10	4	0	0	0	0.027866	1	950	950		29.15	0	1	185210			53006	8593	36967	37028	58301	58301					0.024723277206248895
NDSASLPKV	9	Unmodified	_NDSASLPKV_					0	0	0		ENSG00000198912|ENST00000361605|C1orf174;ENST00000486765.5_1_1:3806526-3811957:-|nuORF	ENSG00000198912|ENST00000361605|C1orf174	ENSG00000198912|ENST00000361605|C1orf174	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2927551269531	2	465.748182	929.481811	0.94056	0.00043806	-1.0274	-0.0004785	-0.086811	-4.0432E-05	465.74761438513724	61.362	0.61082	61.433	61.095	61.706	0.071125					27	15	2	0	0	0	0.024389	1	6965	6965		28.081	7.1346	1	367790			53007	10246	36968	37029	58302	58302					0.014248906552097651
NDSDYEIDD	9	Unmodified	_NDSDYEIDD_					0	0	0		LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant;nc|ENSG00000138709|Q659C4-9|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;nc|ENSG00000138709|Q659C4-2|LARP1B;nc|ENSG00000138709|Q659C4-4|LARP1B	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.280029296875	2	543.198916	1084.38328	-0.48313	-0.00026244	0.049992	2.7156E-05	-0.43314	-0.00023528	543.1996833227668	62.046	0.15457	61.833	61.737	61.892	-0.21375					5	3	2	0	0	0	0.024539	1	6965	6965		5.5578	0	1	74426			53008	5271	36969	37030	58303	58303					-0.1555380217118909
NDSHVPIMEL	10	Unmodified	_NDSHVPIMEL_					0	0	0		DPP6|p.R322H|1|0.14|ENSG00000130226|chr7:154769498-154769498|G/A|missense_variant	DPP6|p.R322H|1|0.14|ENSG00000130226|chr7:154769498-154769498|G/A|missense_variant	DPP6|p.R322H|1|0.14|ENSG00000130226|chr7:154769498-154769498|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.30615234375	2	577.779156	1153.54376	-0.43084	-0.00024893	-2.5916	-0.0014974	-3.0225	-0.0017463	577.777661456816	71.224	0.62097	71.224	70.868	71.489	0					33	15	3	0	0	0	0.03519	1	8640	8640		35.152	0	1	390780			53009	669	36970	37031	58304	58304					-0.026871259879726495
NDSILFQIES	10	Unmodified	_NDSILFQIES_					0	0	0			REV__ENSG00000046604|ENST00000261590|DSG2	REV__ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.8323974609375	2	583.290411	1164.56627	-0.28754	-0.00016772	-2.499	-0.0014577	-2.7866	-0.0016254	583.2888780684709	75.183	2.2888	75.007	74.056	76.345	-0.17548					96	55	2	0	0	0	0.03519	1	8849	8849		78.264	6.3863	1	708210	+		53010	20115	36971	37032	58305	58305					-0.009432033186840272
NDSRYIII	8	Unmodified	_NDSRYIII_					0	0	0			REV__ENSG00000163449|ENST00000437356|TMEM169	REV__ENSG00000163449|ENST00000437356|TMEM169	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.2829895019531	2	497.271824	992.529095	-1.0329	-0.00051365	-0.96777	-0.00048124	-2.0007	-0.0009949	497.2715664214213	44.012	0.34742	43.768	43.52	43.867	-0.2444					25	8	5	0	0	0	0.027866	1	4045	4045		17.365	0	1	660090	+		53011	25567	36972	37033	58306	58306					0.03253169926199462
NDSWEMEEG	9	Unmodified	_NDSWEMEEG_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2579956054688	2	548.698029	1095.3815	-1.415	-0.00077639	2.2058	0.0012103	0.79086	0.00043395	548.6990621184461	33.666	0.43304	33.5	33.278	33.711	-0.16636					20	10	3	0	0	0	0.024523	1	2388	2388		29.15	6.1071	1	233350	+		53012	19892	36973	37034	58307	58307					-0.16237134460789093
NDSWEMEEG	9	Unmodified	_NDSWEMEEG_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.698029	1095.3815	-0.28366	-0.00015565	1.361	0.00074677	1.0773	0.00059113	548.6987101656003	33.715	0.44074	33.484	33.314	33.755	-0.23107	0.002609	-0.0002261	NaN	35.618	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137790	+		53013	19892	36973	37034							-0.16237134460789093
NDSWEMEEG	9	Unmodified	_NDSWEMEEG_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.698029	1095.3815	-0.47412	-0.00026015	1.3857	0.00076032	0.91156	0.00050017	548.6986418291026	33.661	0.34781	33.461	33.286	33.634	-0.20019	-0.020959	-0.00019901	NaN	35.618	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205980	+		53014	19892	36973	37034							-0.16237134460789093
NDTKESLEL	9	Unmodified	_NDTKESLEL_					0	0	0		ENSG00000148204|ENST00000373631|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;nc|ENSG00000148204|Q5IJ48-3|CRB2	ENSG00000148204|ENST00000373631|CRB2	ENSG00000148204|ENST00000373631|CRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3082885742188	2	524.761486	1047.50842	0.43722	0.00022943	0.93486	0.00049058	1.3721	0.00072001	524.7618717254861	71.774	0.9381	71.784	71.433	72.371	0.0097733					55	24	3	0	0	0	0.024313	1	8589	8589		42.864	0	1	1228300			53015	6008	36974	37035	58308	58308					-0.013434652441446815
NDTPERVI	8	Unmodified	_NDTPERVI_					0	0	0			REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7900390625	2	472.245806	942.47706	0.11881	5.6107E-05	3.3999	0.0016056	3.5187	0.0016617	472.24721742438527	47.967	0.46123	47.967	47.748	48.209	0					17	13	2	0	0	0	0.027866	1	4826	4826		74.255	15.473	1	268690	+		53016	34966	36975	37036	58309	58309					0.003520065124348548
NDTTNMSTE	9	Unmodified	_NDTTNMSTE_					0	0	0			REV__ENSG00000164749|ENST00000396423|HNF4G	REV__ENSG00000164749|ENST00000396423|HNF4G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7918701171875	2	506.698029	1011.3815	-1.3002	-0.00065879	-3.9038	-0.0019781	-5.204	-0.0026369	506.69588556686824	44.354	0.16327	44.209	44.162	44.326	-0.14471					7	4	2	0	0	0	0.024367	1	4207	4207		62.107	3.3255	1	76405	+		53017	25798	36976	37037	58310	58310					-0.12373134460767687
NDVAKRVQ	8	Unmodified	_NDVAKRVQ_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.267578125	2	465.261791	928.509028	1.184	0.00055086	-2.9642	-0.0013791	-1.7802	-0.00082828	465.25995243363707	58.913	0.14555	58.725	58.648	58.793	-0.18705					5	3	2	0	0	0	0.027866	1	6666	6666		34.173	0	1	189960	+		53018	20514	36977	37038	58311	58311					0.041914189862382045
NDVLLKRS	8	Unmodified	_NDVLLKRS_					0	0	0			REV__nc|ENSG00000105483|Q9Y2G2-6|CARD8	REV__nc|ENSG00000105483|Q9Y2G2-6|CARD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2952575683594	2	472.779816	943.545079	-0.31543	-0.00014913	1.8627	0.00088064	1.5473	0.00073151	472.78059724112865	40.249	0.87663	40.099	39.707	40.583	-0.1497					36	23	3	0	0	0	0.027866	1	3527	3527		71.877	0	1	390730	+		53019	21529	36978	37039	58312	58312					0.07104876163089102
NDVLLKRS	8	Unmodified	_NDVLLKRS_					0	0	0			REV__nc|ENSG00000105483|Q9Y2G2-6|CARD8	REV__nc|ENSG00000105483|Q9Y2G2-6|CARD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.29473876953125	2	472.779816	943.545079	-0.060365	-2.854E-05	2.2365	0.0010574	2.1761	0.0010288	472.7806274516232	40.547	0.84096	40.322	39.852	40.693	-0.225					34	22	2	0	0	0	0.027866	1	3565	3565		93.195	16.421	1	483440	+		53020	21529	36978	37039	58313	58313					0.07104876163089102
NDVLLKRS	8	Unmodified	_NDVLLKRS_					0	0	0			REV__nc|ENSG00000105483|Q9Y2G2-6|CARD8	REV__nc|ENSG00000105483|Q9Y2G2-6|CARD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2955627441406	2	472.779816	943.545079	-1.357	-0.00064157	3.4689	0.00164	2.1119	0.00099847	472.78107956342666	40.662	0.88539	40.431	39.811	40.696	-0.23029					41	23	2	0	0	0	0.027866	1	3528	3528		99.375	30.588	1	488200	+		53021	21529	36978	37039	58314	58314					0.07104876163089102
NDVPTPLP	8	Unmodified	_NDVPTPLP_					0	0	0			REV__nc|ENSG00000076706|P43121-2|MCAM	REV__nc|ENSG00000076706|P43121-2|MCAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.30267333984375	2	426.726718	851.438883	0.57953	0.0002473	0.16784	7.1622E-05	0.74737	0.00031892	426.7266040890568	67.723	0.53467	67.745	67.51	68.045	0.021584					19	13	2	0	0	0	0.027866	1	8043	8043		24.203	17.009	1	83903	+		53022	36476	36979	37040	58315	58315					0.007221205977657519
NDVWPLIH	8	Unmodified	_NDVWPLIH_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.3145446777344	2	497.261259	992.507966	-0.91145	-0.00045323	3.8544	0.0019166	2.9429	0.0014634	497.2631426705161	53.91	1.7692	53.774	53.462	55.231	-0.13617					89	51	2	0	0	0	0.027866	1	5846	5846		35.201	24.335	1	582660	+		53023	37143	36980	37041	58316	58316					0.011412046173404633
NDVWPLIH	8	Unmodified	_NDVWPLIH_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3144836425781	2	497.261259	992.507966	-0.069841	-3.4729E-05	3.0611	0.0015222	2.9913	0.0014874	497.2627750684329	54.059	1.555	53.814	53.559	55.114	-0.2453					77	46	2	0	0	0	0.027866	1	5856	5856		52.299	11.521	1	598880	+		53024	37143	36980	37041	58317	58317					0.011412046173404633
NDVWPLIH	8	Unmodified	_NDVWPLIH_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.31396484375	2	497.261259	992.507966	0.032698	1.6259E-05	2.7389	0.001362	2.7716	0.0013782	497.2627208804156	53.763	1.6682	53.566	53.387	55.055	-0.19739					89	47	2	0	0	0	0.027866	1	5849	5849		26.796	3.7536	1	415690	+		53025	37143	36980	37041	58318	58318					0.011412046173404633
NDWVYAKV	8	Unmodified	_NDWVYAKV_					0	0	0			REV__ENSG00000278540|ENST00000616317|ACACA	REV__ENSG00000278540|ENST00000616317|ACACA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7558288574219	2	497.753267	993.491981	0.53477	0.00026618	1.3361	0.00066507	1.8709	0.00093126	497.7537503701339	67.894	0.64903	67.894	67.568	68.217	0					48	16	4	0	0	0	0.027866	1	8084	8084		23.042	0	1	1222600	+		53026	29218	36981	37042	58319	58319					-0.005025016195759235
NDYFIRQQYF	10	Unmodified	_NDYFIRQQYF_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2571105957031	3	465.222693	1392.64625	-0.29674	-0.00013805	-2.77	-0.0012887	-3.0668	-0.0014267	465.2214305860871	35.57	0.43256	35.355	35.024	35.457	-0.21555					17	10	2	0	0	0	0.03519	1	2671	2671		26.063	4.283	1	169790			53027	5364	36982	37043	58320	58320					-0.03436716924875327
NDYHFEYK	8	Unmodified	_NDYHFEYK_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2852172851562	2	558.243264	1114.47197	0.05429	3.0307E-05	-4.443	-0.0024803	-4.3887	-0.0024499	558.2406609367844	71.141	2.3187	70.869	70.528	72.847	-0.27185					72	54	2	0	0	0	0.027866	1	8574	8574		18.324	4.1873	1	231400	+		53028	24120	36983	37044	58321	58321					-0.08068297350178
NDYNKETFTL	10	Unmodified	_NDYNKETFTL_					0	0	0		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.21185302734375	3	415.531304	1243.57208	-0.43853	-0.00018222	2.319	0.00096363	1.8805	0.00078141	415.532637555608	29.026	0.25362	29.026	28.82	29.073	0					6	5	2	0	0	0	0.03519	1	1717	1717		9.6461	0.46323	1	15122			53029	4297	36984	37045	58322	58322					-0.039961048070381366
NDYNYLLLAH	10	Unmodified	_NDYNYLLLAH_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	618.3054809570312	2	618.306395	1234.59824	-0.2484	-0.00015359	-2.635	-0.0016293	-2.8834	-0.0017829	618.3044107531886	83.518	0.97593	83.349	83.033	84.009	-0.16915					47	22	3	0	0	0	1.0271	1	10093	10093		42.396	3.1433	1	710330	+		53030	28136	36985	37046	58323	58323					-0.00967790844879346
NEAAIRLKPD	10	Unmodified	_NEAAIRLKPD_					0	0	0			REV__IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	REV__IPO8|p.M544Ifs*9|1|0.3|ENSG00000133704|chr12:30662450-30662451|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.756591796875	2	563.814387	1125.61422	0.31978	0.00018029	2.0662	0.0011649	2.3859	0.0013452	563.8160235853043	64.293	0.55202	64.293	64.026	64.578	0					20	14	2	0	0	0	0.03519	1	7563	7563		23.523	0	1	455270	+		53031	23387	36986	37047	58324	58324					0.056439153920109675
NEACIRFQY	9	Unmodified	_NEACIRFQY_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2637329101562	2	572.266216	1142.51788	-0.30233	-0.00017301	-3.8656	-0.0022121	-4.1679	-0.0023852	572.2638889691538	76.78	0.6736	76.611	76.266	76.939	-0.16854					39	15	3	0	0	0	0.45795	1	9114	9114		62.107	3.3255	1	541050	+		53032	25017	36987	37048	58325	58325					-0.047679754395858254
NEAGRKAVK	9	Unmodified	_NEAGRKAVK_					0	0	0		ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.8367004394531	2	486.78289	971.551228	-0.90986	-0.0004429	3.8943	0.0018957	2.9845	0.0014528	486.78429218148915	34.038	0.27098	33.863	33.701	33.972	-0.17557					9	6	2	0	0	0	0.024477	1	2443	2443		20.947	3.582	1	51618			53033	1551	36988	37049	58326	58326					0.06431394394610379
NEAGRKAVK	9	Unmodified	_NEAGRKAVK_					0	0	0		ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.78289	971.551228	-0.38339	-0.00018663	-3.8701	-0.0018839	-4.2535	-0.0020705	486.78080709953446	34.11	0.23685	34.11	33.972	34.209	0	0.19565	-0.0027568	NaN	20.947	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48640			53034	1551	36988	37049							0.06431394394610379
NEAIFLLF	8	Unmodified	_NEAIFLLF_					0	0	0			REV__ENST00000507335.1_1_5:14664934-14673895:+|nuORF	REV__ENST00000507335.1_1_5:14664934-14673895:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.28778076171875	2	483.768386	965.522219	-0.37985	-0.00018376	-3.1279	-0.0015132	-3.5078	-0.001697	483.7661471542217	22.896	0.63863	22.835	22.473	23.111	-0.06086					35	13	4	0	0	0	0.027866	1	856	856		38.806	19.446	1	164610	+		53035	34045	36989	37050	58327	58327					0.038078570456150374
NEAIRTSTL	9	Unmodified	_NEAIRTSTL_					0	0	0		nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1	nc|ENSG00000155511|P42261-3|GRIA1	nc|ENSG00000155511|P42261-3|GRIA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7511291503906	2	502.772188	1003.52982	-0.014732	-7.4066E-06	-1.6712	-0.00084022	-1.6859	-0.00084763	502.7716284078936	33.992	0.65876	33.768	33.64	34.299	-0.22412					21	16	2	0	0	0	0.024447	1	2476	2476		25.574	0	1	777240			53036	6476	36990	37051	58328	58328					0.028199645752465585
NEAKAHGREW	10	Unmodified	_NEAKAHGREW_					0	0	0		sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	sp|P03209|BRLF1_EBVB9ReplicationandtranscriptionactivatorOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRLF1PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.2926025390625	2	599.291611	1196.56867	-0.39538	-0.00023695	1.3572	0.00081333	0.96178	0.00057638	599.2923724843762	46.837	1.2331	46.74	46.152	47.385	-0.096653					87	33	5	0	0	0	1.0122	1	4549	4549		44.377	0.26039	1	4722400			53037	37930	36991	37052	58329	58329					-0.02175310070379055
NEAKLYNL	8	Unmodified	_NEAKLYNL_					0	0	0			REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P	REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.7481689453125	2	482.758549	963.502546	0.066521	3.2113E-05	0.25523	0.00012322	0.32175	0.00015533	482.758499290212	58.612	1.1337	58.43	58.101	59.235	-0.18133					44	27	3	0	0	0	0.027866	1	6506	6506		29.15	0	1	749970	+		53038	37204	36992	37053	58330	58330					0.019334810348709652
NEALHNSKEE	10	Unmodified	_NEALHNSKEE_					0	0	0			REV__ENSG00000143110|ENST00000369718|C1orf162	REV__ENSG00000143110|ENST00000369718|C1orf162	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.7781372070312	2	585.772916	1169.53128	-0.84778	-0.0004966	4.0977	0.0024003	3.2499	0.0019037	585.774578312829	42.326	1.2585	42.096	41.688	42.947	-0.2303					59	33	3	0	0	0	0.03519	1	3887	3887		45.972	0	1	242800	+		53039	24201	36993	37054	58331	58331					-0.04670446126647221
NEALRESGSQ	10	Unmodified	_NEALRESGSQ_					0	0	0		nc|ENSG00000136449|Q8TBZ2|MYCBPAP;ENSG00000136449|ENST00000323776|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8173828125	2	545.759809	1089.50507	0.64545	0.00035226	-2.6432	-0.0014426	-1.9978	-0.0010903	545.7573880197067	67.96	0.82547	67.704	67.323	68.148	-0.25516					42	19	4	0	0	0	0.03519	1	7800	7800		49.536	22.843	1	382010			53040	5017	36994	37055	58332	58332					-0.03610715298145806
NEALWHPT	8	Unmodified	_NEALWHPT_					0	0	0		ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL;ENST00000545700.5_1_12:6562264-6567817:+|nuORF;nc|ENSG00000139192|Q9BX59-5|TAPBPL;nc|ENSG00000139192|Q9BX59-4|TAPBPL;nc|ENSG00000139192|Q9BX59-6|TAPBPL;nc|ENSG00000139192|Q9BX59-3|TAPBPL	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	ENST00000539384.5_1_12:6560901-6571312:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7900695800781	2	484.235242	966.45593	-0.68951	-0.00033389	3.3803	0.0016369	2.6908	0.001303	484.23686009121286	32.96	0.46034	32.96	32.753	33.213	0					18	11	2	0	0	0	0.027866	1	2364	2364		47.916	8.6628	1	209410			53041	5312	36995	37056	58333	58333					-0.028639587964448765
NEAQRGLLV	9	Unmodified	_NEAQRGLLV_					0	0	0			REV__ENST00000262198.8_1_18:77867167-77875451:+|nuORF	REV__ENST00000262198.8_1_18:77867167-77875451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.821044921875	2	500.282723	998.550893	0.40367	0.00020195	-0.36435	-0.00018228	0.039323	1.9673E-05	500.28232428936207	39.709	0.63945	39.709	39.459	40.099	0					38	17	3	0	0	0	0.024447	1	3407	3407		49.442	15.926	1	1296900	+		53042	29650	36996	37057	58334	58334					0.05155974674767094
NEARLPPL	8	Unmodified	_NEARLPPL_					0	0	0		ENSG00000115112|ENST00000263707|TFCP2L1	REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7903137207031	2	455.261259	908.507966	-0.14153	-6.4435E-05	0.82612	0.0003761	0.68459	0.00031167	455.2614051918799	25.704	0.6794	25.704	25.445	26.124	0					24	15	2	0	0	0	0.027866	1	1231	1231		24.203	0	1	142750	+		53043	21857	36997	37058	58335	58335					0.05005204617339132
NEARSLMP	8	Unmodified	_NEARSLMP_					0	0	0		ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2694091796875	2	459.229102	916.443651	0.68552	0.00031481	-0.32217	-0.00014795	0.36335	0.00016686	459.228899019334	36.729	0.64589	36.729	36.474	37.12	0					24	16	2	0	0	0	0.027866	1	2937	2937		15.642	0	1	182240			53044	9575	36998	37059	58336	58336					-0.0179131853110448
NEATTVPGL	9	Unmodified	_NEATTVPGL_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2669677734375	2	451.234907	900.455261	-0.17772	-8.0196E-05	0.30297	0.00013671	0.12525	5.6516E-05	451.23555602933584	54.395	0.31336	54.395	54.179	54.492	0					12	8	2	0	0	0	0.024319	1	5921	5921		56.721	13.095	1	74351	+		53045	24428	36999	37060	58337	58337					0.0010520176386989988
NEAVHVVYSTQ	11	Unmodified	_NEAVHVVYSTQ_					0	0	0			REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.5628967285156	3	416.206932	1245.59897	-0.28029	-0.00011666	2.0433	0.00085042	1.763	0.00073376	416.2078304157397	46.03	0.29754	45.769	45.593	45.891	-0.26118					11	7	2	0	0	0	0.024738	1	4380	4380		14.779	0	1	116500	+		53046	29039	37000	37061	58338	58338					-0.014009961958436179
NEAVLKNLS	9	Unmodified	_NEAVLKNLS_					0	0	0			REV__ENSG00000138796|ENST00000309522|HADH	REV__ENSG00000138796|ENST00000309522|HADH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.77923583984375	2	494.277106	986.53966	-0.30302	-0.00014978	1.2008	0.00059352	0.89777	0.00044375	494.2768121060812	57.361	0.73722	57.127	56.805	57.543	-0.23363					52	19	4	0	0	0	0.023061	1	6293	6293		60.118	0	1	2716100	+		53047	23904	37001	37062	58339	58339					0.045851525806369864
NECETGLAKCK	11	Unmodified	_NECETGLAKCK_					0	0	0		nc|ENSG00000268758|Q86SQ3-2|ADGRE4P;nc|ENSG00000268758|Q86SQ3|ADGRE4P	nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.2997436523438	2	598.275923	1194.53729	-0.28121	-0.00016824	-3.0004	-0.0017951	-3.2816	-0.0019633	598.2740882126171	69.011	0.81825	68.768	68.548	69.366	-0.24277					35	19	2	0	0	0	0.024727	1	8079	8079		27.047	3.5246	1	1348800			53048	18790	37002	37063	58340	58340					-0.05219387211013782
NECETGLAKCK	11	Unmodified	_NECETGLAKCK_					0	0	0		nc|ENSG00000268758|Q86SQ3-2|ADGRE4P;nc|ENSG00000268758|Q86SQ3|ADGRE4P	nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	598.275923	1194.53729	-1.2536	-0.00075003	-3.0048	-0.0017977	-4.2584	-0.0025477	598.2746835553017	69.01	1.1535	68.749	68.22	69.374	-0.26166	-0.009768	-4.7284E-06	NaN	20.837	68	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1232800			53049	18790	37002	37063							-0.05219387211013782
NECGKVFR	8	Unmodified	_NECGKVFR_					0	0	0		ENSG00000197497|ENST00000396424|ZNF665;ZNF841|p.C766_G767insY|1|0.14|ENSG00000197608|chr19:52065235-52065236|-/ATA|inframe_insertion;nc|ENSG00000197608|Q6ZN19-2|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000170949|ENST00000683776|ZNF160;nc|ENSG00000198482|Q8N4W9-2|ZNF808;ZNF841|p.G767Qfs*5|1|0.14|ENSG00000197608|chr19:52065234-52065235|CC/-|frameshift_variant;ENSG00000198482|ENST00000359798|ZNF808;ENSG00000197608|ENST00000594440|ZNF841;ENSG00000196267|ENST00000682614|ZNF836;ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534;ENSG00000213793|ENST00000638862|ZNF888	ENSG00000197497|ENST00000396424|ZNF665;ENSG00000196267|ENST00000682614|ZNF836;ENSG00000198633|ENST00000433050|ZNF534;ENSG00000213793|ENST00000638862|ZNF888	ENSG00000197497|ENST00000396424|ZNF665	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2608337402344	2	476.737094	951.459635	-0.77299	-0.00036851	0.99172	0.00047279	0.21874	0.00010428	476.7372470429613	28.034	0.19811	27.865	27.688	27.886	-0.16897					7	4	2	0	0	0	0.027866	1	1581	1581		27.882	10.517	1	176120			53050	10008;9846;10160;10522	37003	37064	58341	58341					-0.01803612294213508
NECILLFSD	9	Unmodified	_NECILLFSD_					0	0	0		TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2687377929688	2	527.2497	1052.48485	-0.86566	-0.00045642	2.3465	0.0012372	1.4808	0.00078075	527.251151982316	78.129	0.69759	78.129	77.833	78.531	0					25	16	2	0	0	0	0.024484	1	9676	9676		30.318	10.958	1	167980			53051	5807	37004	37065	58342	58342					-0.039296022822782106
NECMRIKIL	9	Unmodified	_NECMRIKIL_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ADCY2|p.H415Ffs*27|1|0.06|ENSG00000078295|chr5:7706875-7706876|-/TTTT|frameshift_variant;nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	ENSG00000121281|ENST00000673801|ADCY7;nc|ENSG00000078295|Q08462-2|ADCY2	ENSG00000121281|ENST00000673801|ADCY7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.31787109375	2	560.304287	1118.59402	-0.85995	-0.00048183	3.9061	0.0021886	3.0461	0.0017068	560.3065115472441	65.139	0.76649	65.139	64.8	65.566	0					55	21	3	0	0	0	0.024319	1	7659	7659		31.53	7.0106	1	7340900			53052	3859;1634	37005	37066	58343	58343					0.03946705136172568
NECMRIKIL	9	Unmodified	_NECMRIKIL_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ADCY2|p.H415Ffs*27|1|0.06|ENSG00000078295|chr5:7706875-7706876|-/TTTT|frameshift_variant;nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	ENSG00000121281|ENST00000673801|ADCY7;nc|ENSG00000078295|Q08462-2|ADCY2	ENSG00000121281|ENST00000673801|ADCY7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.304287	1118.59402	-0.40791	-0.00022856	3.7283	0.002089	3.3203	0.0018604	560.3063151904945	65.114	0.81555	65.151	64.891	65.706	0.037384	-0.011837	-0.00029857	NaN	24.519	68	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5022600			53053	3859;1634	37005	37066							0.03946705136172568
NECMRIKIL	9	Unmodified	_NECMRIKIL_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ADCY2|p.H415Ffs*27|1|0.06|ENSG00000078295|chr5:7706875-7706876|-/TTTT|frameshift_variant;nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	ENSG00000121281|ENST00000673801|ADCY7;nc|ENSG00000078295|Q08462-2|ADCY2	ENSG00000121281|ENST00000673801|ADCY7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.304287	1118.59402	-0.42026	-0.00023547	3.8638	0.0021649	3.4436	0.0019294	560.3063069581888	65.424	0.78337	65.182	64.923	65.706	-0.24145	0.01949	-0.00014668	NaN	24.519	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478300			53054	3859;1634	37005	37066							0.03946705136172568
NECMRIKIL	9	Unmodified	_NECMRIKIL_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ADCY2|p.H415Ffs*27|1|0.06|ENSG00000078295|chr5:7706875-7706876|-/TTTT|frameshift_variant;nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	ENSG00000121281|ENST00000673801|ADCY7;nc|ENSG00000078295|Q08462-2|ADCY2	ENSG00000121281|ENST00000673801|ADCY7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	560.304287	1118.59402	-1.3668	-0.00076584	5.8002	0.0032499	4.4334	0.002484	560.3077085471508	65.351	0.65788	65.148	64.94	65.598	-0.20254	-0.014645	0.0020233	NaN	24.519	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324840			53055	3859;1634	37005	37066							0.03946705136172568
NECMRIKIL	9	Unmodified	_NECMRIKIL_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7;ADCY2|p.H415Ffs*27|1|0.06|ENSG00000078295|chr5:7706875-7706876|-/TTTT|frameshift_variant;nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	ENSG00000121281|ENST00000673801|ADCY7;nc|ENSG00000078295|Q08462-2|ADCY2	ENSG00000121281|ENST00000673801|ADCY7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.304287	1118.59402	-0.70504	-0.00039504	3.9191	0.0021959	3.214	0.0018008	560.3069597783236	65.43	0.98232	65.178	64.823	65.806	-0.25112	0.015633	-8.4773E-05	NaN	24.519	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344490			53056	3859;1634	37005	37066							0.03946705136172568
NECPQPASL	9	Unmodified	_NECPQPASL_					0	0	0			REV__ENST00000474131.5_1_10:75577276-75601951:-|nuORF	REV__ENST00000474131.5_1_10:75577276-75601951:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7355041503906	2	479.718567	957.422581	0.10786	5.1744E-05	-4.2234	-0.0020261	-4.1156	-0.0019743	479.7168841857328	59.835	0.47525	59.635	59.5	59.975	-0.20016					21	12	2	0	0	0	0.018299	1	6815	6815		129.42	22.414	1	348100	+		53057	33264	37006	37067	58344	58344					-0.057833286306504306
NECPSGPYCSF	11	Unmodified	_NECPSGPYCSF_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.87591552734375	3	401.819691	1202.43724	-0.61754	-0.00024814	2.5052	0.0010066	1.8876	0.00075848	401.8205109898148	37.317	0.39299	37.108	36.961	37.354	-0.2092					15	9	2	0	0	0	0.024735	1	3000	3000		8.0344	0	1	102070	+		53058	27290	37007	37068	58345	58345					-0.1558762454483258
NECQLSRERL	10	Unmodified	_NECQLSRERL_					0	0	0			REV__ENSG00000258472|ENST00000531839|unknown;REV__ENSG00000076382|ENST00000321765|SPAG5	REV__ENSG00000076382|ENST00000321765|SPAG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.5582275390625	3	416.543549	1246.60882	0.29951	0.00012476	-3.7805	-0.0015747	-3.481	-0.00145	416.5418454996313	24.275	0.68409	24.353	24.093	24.777	0.078344					33	14	4	0	0	0	0.03519	1	1021	1021		23.378	6.2112	1	276360	+		53059	29097;20568	37008	37069	58346	58346					-0.0046213146213176515
NECRTGIH	8	Unmodified	_NECRTGIH_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.286865234375	2	465.216526	928.418499	-1.3713	-0.00063793	-3.3632	-0.0015646	-4.7344	-0.0022025	465.21443100654994	75.291	0.25775	75.291	75.155	75.413	0					15	6	4	0	0	0	0.027866	1	9238	9238		33.516	11.813	1	160190			53060	7449	37009	37070	58347	58347					-0.048573733336979785
NEDCLYLNIY	10	Unmodified	_NEDCLYLNIY_					0	0	0		nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;NLGN4Y-VAMP7|1|fusion;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	630.2865600585938	2	630.284271	1258.55399	0.016276	1.0259E-05	2.5577	0.0016121	2.5739	0.0016223	630.2857236313877	75.523	1.1052	75.347	74.9	76.006	-0.17548					67	27	4	0	0	0	0.59716	1	8916	8916		77.318	18.536	1	1756300			53061	5921	37010	37071	58348	58348					-0.06494563053411184
NEDCLYLNIY	10	Unmodified	_NEDCLYLNIY_					0	0	0		nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;NLGN4Y-VAMP7|1|fusion;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	630.284271	1258.55399	-0.86187	-0.00054322	3.4673	0.0021854	2.6055	0.0016422	630.2862701457776	75.601	0.99717	75.343	74.863	75.86	-0.25866	-0.015949	0.00047033	NaN	77.318	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1662000			53062	5921	37010	37071							-0.06494563053411184
NEDDAMELLE	10	Unmodified	_NEDDAMELLE_					0	0	0		ENST00000521406.5_1_8:69442879-69730478:+|nuORF;nc|nan|Q49A92-2|C8orf34;ENSG00000165084|ENST00000518698|C8orf34	ENST00000521406.5_1_8:69442879-69730478:+|nuORF	ENST00000521406.5_1_8:69442879-69730478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.8195190429688	2	589.747718	1177.48088	-0.59035	-0.00034816	3.4245	0.0020196	2.8342	0.0016714	589.7493997072895	68.988	1.4315	68.757	68.116	69.548	-0.23048					47	34	2	0	0	0	0.03519	1	8093	8093		27.047	16.182	1	116400			53063	7363	37011	37072	58349	58349					-0.1007573656668228
NEDDNVTCIPI	11	Unmodified	_NEDDNVTCIPI_					0	0	0			REV__nc|nan|Q53FE4-2|C4orf17	REV__nc|nan|Q53FE4-2|C4orf17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.8585510253906	3	411.520299	1231.53907	-0.29104	-0.00011977	2.4402	0.0010042	2.1492	0.00088443	411.5216270308326	30.475	0.71983	30.231	29.862	30.582	-0.24415					21	16	2	0	0	0	0.024736	1	1933	1933		10.998	0	1	148120	+		53064	23908	37012	37073	58350	58350					-0.0674405492140977
NEDELVLL	8	Unmodified	_NEDELVLL_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77447509765625	2	472.75039	943.486227	0.66752	0.00031557	4.0651	0.0019218	4.7326	0.0022374	472.7522756603795	36.976	0.52916	36.913	36.669	37.198	-0.063385					24	13	2	0	0	0	0.027866	1	2945	2945		18.324	4.5491	1	242780	+		53065	20200	37013	37074	58351	58351					0.012223550780959158
NEDELVLL	8	Unmodified	_NEDELVLL_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.77532958984375	2	472.75039	943.486227	0.51334	0.00024268	3.9759	0.0018796	4.4892	0.0021223	472.7517142004934	37.213	0.2271	37.02	36.812	37.039	-0.193					9	5	2	0	0	0	0.027866	1	2941	2941		47.657	14.845	1	77826	+		53066	20200	37013	37074	58352	58352					0.012223550780959158
NEDEPSEPSE	10	Unmodified	_NEDEPSEPSE_					0	0	0			REV__nc|ENSG00000152592|Q13316-2|DMP1	REV__nc|ENSG00000152592|Q13316-2|DMP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7667236328125	2	566.717473	1131.42039	0.5002	0.00028347	-3.6486	-0.0020677	-3.1484	-0.0017843	566.7137310617353	40.927	0.21489	40.804	40.618	40.833	-0.12317					8	5	2	0	0	0	0.03519	1	3613	3613		34.173	20.035	1	60980	+		53067	24855	37014	37075	58353	58353					-0.14006130625398328
NEDETVRIY	9	Unmodified	_NEDETVRIY_					0	0	0			REV__ENSG00000120948|ENST00000240185|TARDBP	REV__ENSG00000120948|ENST00000240185|TARDBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7749633789062	2	569.772385	1137.53022	-0.026055	-1.4845E-05	3.8843	0.0022132	3.8583	0.0021983	569.7746014433953	77.941	1.8668	77.679	77.313	79.179	-0.26202					82	43	5	0	0	0	0.62163	1	9271	9271		51.335	1.8939	1	9022800	+		53068	22571	37015	37076	58354	58354					-0.033046604955416115
NEDHWEQT	8	Unmodified	_NEDHWEQT_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2346801757812	2	529.712328	1057.4101	0.14405	7.6308E-05	-0.78064	-0.00041352	-0.63659	-0.00033721	529.7113860907057	67.249	0.32486	67	66.835	67.16	-0.24839					10	7	2	0	0	0	0.027866	1	7725	7725		29.15	2.4566	1	132900			53069	11042	37016	37077	58355	58355					-0.1163064876932367
NEDKKAPLR	9	Unmodified	_NEDKKAPLR_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7603759765625	2	535.80128	1069.58801	-0.33969	-0.00018201	2.292	0.001228	1.9523	0.001046	535.8027338804916	42.139	0.52057	42.016	41.786	42.307	-0.12299					22	13	2	0	0	0	0.024484	1	3750	3750		30.318	0	1	197960			53070	5364	37017	37078	58356	58356					0.055996462205030184
NEDKKIDF	8	Unmodified	_NEDKKIDF_					0	0	0		S100A7A|p.K64N|1|0.26|ENSG00000184330|chr1:153419195-153419195|G/C|missense_variant;ENSG00000184330|ENST00000368729|S100A7A;ENSG00000143556|ENST00000368723|S100A7	S100A7A|p.K64N|1|0.26|ENSG00000184330|chr1:153419195-153419195|G/C|missense_variant	S100A7A|p.K64N|1|0.26|ENSG00000184330|chr1:153419195-153419195|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7801208496094	2	504.753464	1007.49238	-0.5919	-0.00029877	4.3062	0.0021736	3.7143	0.0018748	504.75554992820815	24.231	0.43414	24.231	23.951	24.385	0					15	9	2	0	0	0	0.027866	1	1035	1035		40.573	0	1	53881			53071	5666	37018	37079	58357	58357					-0.011071266903627475
NEDKLDLTMKE	11	Unmodified	_NEDKLDLTMKE_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	446.75	3	445.88687	1334.63878	-0.89525	-0.00039918	-1.794	-0.00079992	-2.6892	-0.0011991	445.88615731732773	33.5	0.4763	33.335	33.117	33.593	-0.16565					27	11	4	0	0	0	0.02473	1	2369	2369		15.921	0	1	297860	+		53072	28165	37019	37080	58358	58358					-0.015152373074670322
NEDLAIIL	8	Unmodified	_NEDLAIIL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7557373046875	2	450.755475	899.496398	-0.11363	-5.1221E-05	-2.3507	-0.0010596	-2.4644	-0.0011108	450.75428890261543	20.053	0.6832	20.053	19.689	20.372	0					23	13	2	0	0	0	0.87148	1	487	487		53.351	5.4358	1	348050	+		53073	29089	37020	37081	58359	58359					0.04262962803340997
NEDLAIIL	8	Unmodified	_NEDLAIIL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	450.755475	899.496398	-0.11363	-5.1221E-05	-2.3507	-0.0010596	-2.4644	-0.0011108	450.75428890261543	20.053	0.6832	20.053	19.689	20.372	0	-0.068564	-8.4738E-05	NaN	53.351	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348050	+		53074	29089	37020	37081							0.04262962803340997
NEDLIGFLT	9	Unmodified	_NEDLIGFLT_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27667236328125	2	511.263665	1020.51278	-0.19139	-9.7849E-05	0.48461	0.00024776	0.29322	0.00014991	511.26370984781073	73.516	0.47179	73.239	73.01	73.482	-0.2769					14	11	2	0	0	0	0.024288	1	8602	8602		44.377	0	1	116770	+		53075	22985	37021	37082	58360	58360					0.003340439694284214
NEDLKARID	9	Unmodified	_NEDLKARID_					0	0	0		ENSG00000132938|ENST00000612955|MTUS2;nc|ENSG00000132938|Q5JR59-4|MTUS2;nc|ENSG00000132938|Q5JR59-3|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3119506835938	2	537.28292	1072.55129	-0.31938	-0.0001716	3.8037	0.0020437	3.4844	0.0018721	537.2848701851937	59.063	0.68651	59.149	58.74	59.426	0.085682					41	18	3	0	0	0	0.023837	1	6651	6651		54.776	22.026	1	4338700			53076	4664	37022	37083	58361	58361					0.017913496039454913
NEDLQWAM	8	Unmodified	_NEDLQWAM_					0	0	0			REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.76397705078125	2	503.718567	1005.42258	-0.71885	-0.0003621	1.6534	0.00083287	0.93459	0.00047077	503.719719196013	34.926	0.23416	34.74	34.601	34.835	-0.18675					6	5	2	0	0	0	0.027866	1	2578	2578		34.173	0	1	59940	+		53077	24760	37023	37084	58362	58362					-0.07991328630646422
NEDTTADFF	9	Unmodified	_NEDTTADFF_					0	0	0		ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG	ENST00000512747.3_1_X:70329223-70331389:-|nuORF	ENST00000512747.3_1_X:70329223-70331389:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.8082275390625	2	530.216911	1058.41927	-0.92704	-0.00049153	2.6909	0.0014267	1.7638	0.00093521	530.2178694431501	25.833	0.39107	25.81	25.651	26.042	-0.023088					10	8	2	0	0	0	0.024466	1	1271	1271		39.253	0	1	26799			53078	5944	37024	37085	58363	58363					-0.10760300203651241
NEDVVLIRA	9	Unmodified	_NEDVVLIRA_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3340454101562	2	514.790381	1027.56621	-0.54832	-0.00028227	0.89787	0.00046221	0.34954	0.00017994	514.7901098158442	50.004	0.63313	50.004	49.544	50.178	0					29	17	2	0	0	0	0.020937	1	5139	5139		77.318	0	1	332380			53079	3446	37025	37086	58364	58364					0.053528414719721695
NEDVVSQLL	9	Unmodified	_NEDVVSQLL_					0	0	0			REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7665100097656	2	508.766571	1015.51859	-0.1177	-5.9884E-05	-0.052457	-2.6688E-05	-0.17016	-8.6572E-05	508.76649675363586	65.677	0.77671	65.715	65.389	66.166	0.037384					48	20	3	0	0	0	0.23085	1	7700	7700		84.916	10.66	1	4997100	+		53080	32108	37026	37087	58365	58365					0.011451424811184552
NEEAACRLN	9	Unmodified	_NEEAACRLN_					0	0	0			REV__ENSG00000113083|ENST00000231004|LOX	REV__ENSG00000113083|ENST00000231004|LOX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7875061035156	2	510.232373	1018.45019	-0.46803	-0.0002388	-1.3161	-0.00067153	-1.7841	-0.00091033	510.2310866689707	60.281	1.3764	60.078	59.39	60.766	-0.203					46	36	2	0	0	0	0.024292	1	6906	6906		49.442	8.6634	1	188880	+		53081	22041	37027	37088	58366	58366					-0.05829425370416175
NEEALGGHDVK	11	Unmodified	_NEEALGGHDVK_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	584.3300170898438	2	584.783284	1167.55202	-0.34051	-0.00019913	-3.3375	-0.0019517	-3.678	-0.0021508	584.7814416911355	59.889	0.5589	59.968	59.721	60.28	0.078888					30	14	3	0	0	0	0.024771	1	6750	6750		35.152	0	1	432030	+		53082	27888	37028	37089	58367	58367					-0.025058557469947118
NEEARLDIL	9	Unmodified	_NEEARLDIL_					0	0	0		PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant	PSMC5|p.S333Lfs*4|1|0.16|ENSG00000087191|chr17:63831532-63831532|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7848510742188	2	536.785296	1071.55604	-0.61426	-0.00032972	0.21054	0.00011301	-0.40372	-0.00021671	536.7853357507854	52.967	0.87309	52.82	52.366	53.239	-0.14724					56	22	4	0	0	0	0.041068	1	5674	5674		132.76	3.3366	1	2836600			53083	1838	37029	37090	58368	58368					0.023122337467157195
NEEAVLVQV	9	Unmodified	_NEEAVLVQV_					0	0	0			REV__ENSG00000156427|ENST00000274625|FGF18	REV__ENSG00000156427|ENST00000274625|FGF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.3216247558594	2	500.769114	999.523675	-0.066047	-3.3074E-05	0.27707	0.00013875	0.21103	0.00010568	500.7689571835259	63.488	0.67857	63.236	62.766	63.444	-0.25141					30	17	2	0	0	0	0.024257	1	7400	7400		58.23	21.783	1	317770	+		53084	25075	37030	37091	58369	58369					0.023894463437159175
NEEAVLVQV	9	Unmodified	_NEEAVLVQV_					0	0	0			REV__ENSG00000156427|ENST00000274625|FGF18	REV__ENSG00000156427|ENST00000274625|FGF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.32122802734375	2	500.769114	999.523675	1.1786	0.00059019	-0.91777	-0.00045959	0.2608	0.0001306	500.7682764098495	63.226	0.6386	63.28	62.845	63.483	0.054104					31	16	2	0	0	0	0.023842	1	7309	7309		41.427	8.6761	1	371500	+		53085	25075	37030	37091	58370	58370					0.023894463437159175
NEECNFKL	8	Unmodified	_NEECNFKL_					0	0	0			REV__ENSG00000162377|ENST00000371538|COA7	REV__ENSG00000162377|ENST00000371538|COA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7951354980469	2	498.726392	995.438231	0.73284	0.00036548	2.5707	0.0012821	3.3036	0.0016476	498.7274473552094	58.662	0.62288	58.662	58.342	58.965	0					40	16	3	0	0	0	0.027866	1	6615	6615		87.754	21.325	1	853650	+		53086	25431	37031	37092	58371	58371					-0.05967042113593379
NEECNFKL	8	Unmodified	_NEECNFKL_					0	0	0			REV__ENSG00000162377|ENST00000371538|COA7	REV__ENSG00000162377|ENST00000371538|COA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.79571533203125	2	498.726392	995.438231	1.0141	0.00050577	1.2134	0.00060513	2.2275	0.0011109	498.7272718909643	58.922	0.61769	58.735	58.424	59.042	-0.18705					44	16	4	0	0	0	0.027866	1	6625	6625		66.429	0	1	882740	+		53087	25431	37031	37092	58372	58372					-0.05967042113593379
NEEEAEQPL	9	Unmodified	_NEEEAEQPL_					0	0	0			REV__ENSG00000010270|ENST00000009041|STARD3NL	REV__ENSG00000010270|ENST00000009041|STARD3NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7960205078125	2	529.735468	1057.45638	1.0991	0.00058222	0.9102	0.00048216	2.0093	0.0010644	529.7355200683943	63.176	0.63116	63.23	62.888	63.519	0.054104					24	16	2	0	0	0	0.024405	1	7254	7254		44.117	0	1	177570	+		53088	19900	37032	37093	58373	58373					-0.07004628657887224
NEEEPESVPS	10	Unmodified	_NEEEPESVPS_					0	0	0			REV__ENSG00000135999|ENST00000258484|EPC2	REV__ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2860107421875	2	558.738208	1115.46186	-0.80173	-0.00044796	3.6741	0.0020529	2.8724	0.0016049	558.7391745201815	40.121	0.31094	39.891	39.697	40.008	-0.23021					11	7	2	0	0	0	0.03519	1	3413	3413		35.152	8.4591	1	51638	+		53089	23609	37033	37094	58374	58374					-0.09124949866077259
NEEEQRGPPL	10	Unmodified	_NEEEQRGPPL_					0	0	0			REV__ENSG00000188396|ENST00000339355|DYNLT4	REV__ENSG00000188396|ENST00000339355|DYNLT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.3301391601562	2	584.783284	1167.55202	-0.51198	-0.0002994	-3.2273	-0.0018873	-3.7393	-0.0021867	584.7815411413453	59.993	0.4736	59.993	59.745	60.219	0					28	12	4	0	0	0	0.03519	1	6857	6857		24.519	0	1	339170	+		53090	28037	37034	37095	58375	58375					-0.025058557469719744
NEEFDKDYQ	9	Unmodified	_NEEFDKDYQ_					0	0	0		nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.2959594726562	2	594.2462	1186.47785	-1.5749	-0.00093589	1.4579	0.00086632	-0.11706	-6.9564E-05	594.2457323721679	48.313	0.29966	48.037	47.851	48.151	-0.27598					9	7	2	0	0	0	0.024541	1	4747	4747		22.58	4.3176	1	73602			53091	18619	37035	37096	58376	58376					-0.10793243629177596
NEEFDKDYQ	9	Unmodified	_NEEFDKDYQ_					0	0	0		nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	nc|ENSG00000196228|Q6IMI6|SULT1C3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	594.2462	1186.47785	-1.0172	-0.00060444	0.87446	0.00051964	-0.1427	-8.4796E-05	594.245866500475	48.024	0.40736	47.926	47.743	48.15	-0.097553	-0.055645	-0.00028413	NaN	33.922	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108890			53092	18619	37035	37096							-0.10793243629177596
NEEFLNWSDV	10	Unmodified	_NEEFLNWSDV_					0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.73284912109375	3	418.187537	1251.54078	0.21507	8.9938E-05	1.8807	0.00078647	2.0957	0.00087641	418.5215771978324	39.738	0.45845	39.508	39.313	39.771	-0.23021					11	7	2	0	0	0	0.03519	1	3349	3349		26.063	3.5018	1	151450	+		53093	21642	37036	37097	58377	58377					-0.07492677841173645
NEEGKLYA	8	Unmodified	_NEEGKLYA_					0	0	0		ENST00000441829.2_9:44302237-44303615:+|nuORF	ENST00000441829.2_9:44302237-44303615:+|nuORF	ENST00000441829.2_9:44302237-44303615:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.27935791015625	2	462.227082	922.439611	-0.27629	-0.00012771	0.66838	0.00030894	0.3921	0.00018124	462.2270781701661	47.475	0.4902	47.475	47.289	47.779	0					28	14	3	0	0	0	0.027866	1	4769	4769		42.396	5.9494	1	515160			53094	14366	37037	37098	58378	58378					-0.024710847531878244
NEEHDGLL	8	Unmodified	_NEEHDGLL_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-4|PATL1	REV__nc|ENSG00000166889|Q86TB9-4|PATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2784729003906	2	463.714339	925.414125	-0.31999	-0.00014838	-1.997	-0.00092604	-2.317	-0.0010744	463.71287538925884	51.27	0.3291	51.121	50.897	51.226	-0.14915					10	8	2	0	0	0	0.027866	1	5398	5398		12.207	0	1	62888	+		53095	26075	37038	37099	58379	58379					-0.0515655927562193
NEEKKSFLD	9	Unmodified	_NEEKKSFLD_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2|p.D503Afs*13|1|0.06|ENSG00000054654|chr14:63978952-63978953|-/CTATGGCTAAAATTATAGTTAA|frameshift_variant;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3108520507812	2	555.277303	1108.54005	-1.4428	-0.00080116	-1.8699	-0.0010383	-3.3127	-0.0018394	555.2761111505694	44.578	0.67565	44.429	44.19	44.866	-0.1488					40	19	3	0	0	0	0.024447	1	4211	4211		25.574	0	1	736010			53096	1175;38049	37039	37100	58380	58380					-0.009874724901919762
NEELKSHKL	9	Unmodified	_NEELKSHKL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.7586059570312	2	549.301113	1096.58767	-0.10122	-5.56E-05	-3.4751	-0.0019089	-3.5763	-0.0019645	549.2991034086513	67.682	1.3944	67.682	67.285	68.68	0					71	35	3	0	0	0	0.024257	1	8165	8165		49.536	0	1	1560200			53097	2390	37040	37101	58381	58381					0.04324226500671102
NEEQKESLL	9	Unmodified	_NEEQKESLL_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.275146484375	2	545.274761	1088.53497	-0.96677	-0.00052716	0.24479	0.00013348	-0.72198	-0.00039368	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.76818	1	9720	9720		41.427	2.1738	1	52905000	+		53098	21024	37041	37102	58382	58382					-0.005757763527981297
NEERRKSCPT	10	Unmodified	_NEERRKSCPT_					0	0	0			REV__ENST00000564814.1_1_16:58426144-58426288:+|nuORF	REV__ENST00000564814.1_1_16:58426144-58426288:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2108459472656	3	407.199783	1218.57752	0.18868	7.6831E-05	-0.21221	-8.6413E-05	-0.023533	-9.5826E-06	407.19908565034615	27.687	1.1007	27.445	26.744	27.845	-0.24217					43	25	2	0	0	0	0.03519	1	1507	1507		38.714	3.5359	1	480970	+		53099	35261	37042	37103	58383	58383					-0.023027044962191212
NEERRKSCPT	10	Unmodified	_NEERRKSCPT_					0	0	0			REV__ENST00000564814.1_1_16:58426144-58426288:+|nuORF	REV__ENST00000564814.1_1_16:58426144-58426288:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	407.199783	1218.57752	-0.28152	-0.00011464	2.4891	0.0010135	2.2075	0.00089891	407.19917399176376	27.667	0.73259	27.511	27.185	27.918	-0.15664	0.063389	0.0023071	NaN	38.714	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598630	+		53100	35261	37042	37103							-0.023027044962191212
NEESPRVKQD	10	Unmodified	_NEESPRVKQD_					0	0	0			REV__BDNF|p.N80S|1|0.45|ENSG00000176697|chr11:27658326-27658326|T/C|missense_variant	REV__BDNF|p.N80S|1|0.45|ENSG00000176697|chr11:27658326-27658326|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2037048339844	3	401.198436	1200.57348	-0.6067	-0.00024341	-0.7444	-0.00029865	-1.3511	-0.00054206	401.1983945461778	25.595	0.78121	25.424	25.076	25.857	-0.17151					43	18	4	0	0	0	0.03519	1	1180	1180		59.931	11.329	1	1036100	+		53101	19205	37043	37104	58384	58384					-0.018784707182931015
NEETQPHPR	9	Unmodified	_NEETQPHPR_					0	0	0			REV__ENST00000328914.4_1_7:4802101-4802248:+|nuORF	REV__ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7885131835938	2	554.262519	1106.51048	0.54645	0.00030287	-0.20396	-0.00011305	0.34249	0.00018983	554.2624144935959	18.909	0.98927	18.753	18.099	19.088	-0.15637					29	19	2	0	0	0	0.024438	1	378	378		22.58	0	1	13871	+		53102	30435	37044	37105	58385	58385					-0.038509917156716256
NEFFRKID	8	Unmodified	_NEFFRKID_					0	0	0			REV__ENSG00000115904|ENST00000402219|SOS1	REV__ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7940063476562	2	534.777274	1067.53999	-0.12542	-6.7074E-05	-0.2015	-0.00010776	-0.32693	-0.00017483	534.7772929565141	91.294	0.12327	91.306	91.237	91.36	0.011276					4	2	2	0	0	0	0.027866	1	11478	11478		27.882	1.1893	1	40271	+		53103	22239	37045	37106	58386	58386					0.008925723004722386
NEFKKQFS	8	Unmodified	_NEFKKQFS_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2720336914062	2	514.263999	1026.51345	-0.51054	-0.00026255	-2.7962	-0.001438	-3.3068	-0.0017005	514.2618799012548	26.377	1.0152	26.354	26.042	27.057	-0.023088					74	24	5	0	0	0	0.027866	1	1352	1352		44.117	0	1	423370	+		53104	20030	37046	37107	58387	58387					0.0012488340912568674
NEFNNAQVTVL	11	Unmodified	_NEFNNAQVTVL_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.2348937988281	3	416.878815	1247.61462	0.058673	2.446E-05	-2.6762	-0.0011157	-2.6175	-0.0010912	416.87775389554366	23.877	0.38571	23.877	23.694	24.08	0					13	8	3	0	0	0	0.02478	1	961	961		38.714	0	1	21430			53105	9743	37047	37108	58388	58388					0.0007129032117063616
NEFPFPVNI	9	Unmodified	_NEFPFPVNI_					0	0	0		ENSG00000162877|ENST00000367136|PM20D1	ENSG00000162877|ENST00000367136|PM20D1	ENSG00000162877|ENST00000367136|PM20D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.821044921875	2	538.7742	1075.53385	-1.1955	-0.0006441	-0.23045	-0.00012416	-1.4259	-0.00076826	538.7735992033301	64.908	0.6702	64.946	64.517	65.187	0.037384					23	17	2	0	0	0	0.024288	1	7519	7519		52.937	15.778	1	170910			53106	7002	37048	37109	58389	58389					-0.0008994593106308457
NEFPHYSI	8	Unmodified	_NEFPHYSI_					0	0	0			REV__ENSG00000135541|ENST00000265602|AHI1	REV__ENSG00000135541|ENST00000265602|AHI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7637023925781	2	503.735074	1005.4556	-0.46631	-0.0002349	4.4196	0.0022263	3.9533	0.0019914	503.7372266040862	34.957	0.28181	34.745	34.642	34.924	-0.21246					8	6	2	0	0	0	0.027866	1	2607	2607		11.511	0	1	100840	+		53107	23557	37049	37110	58390	58390					-0.046913785162928434
NEFSVDQNN	9	Unmodified	_NEFSVDQNN_					0	0	0			REV__nc|ENSG00000101773|Q99708-3|RBBP8	REV__nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7968139648438	2	533.725435	1065.43632	-0.52343	-0.00027937	3.6794	0.0019638	3.156	0.0016844	533.7258960332967	55.39	0.20005	55.236	55.095	55.295	-0.15434					8	5	2	0	0	0	0.024288	1	6092	6092		52.937	23.787	1	70997	+		53108	36527	37050	37111	58391	58391					-0.09378379597842468
NEFYGRTP	8	Unmodified	_NEFYGRTP_					0	0	0			REV__ENST00000474235.1_1_22:39496283-39496472:+|nuORF	REV__ENST00000474235.1_1_22:39496283-39496472:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7972412109375	2	492.232699	982.450845	-0.026549	-1.3068E-05	3.6865	0.0018146	3.66	0.0018016	492.23487601000744	97.184	0.93462	97.184	96.659	97.594	0					30	20	2	0	0	0	0.027866	1	12441	12441		27.882	16.371	1	125790	+		53109	21084	37051	37112	58392	58392					-0.04108262659042339
NEGALLYGE	9	Unmodified	_NEGALLYGE_					0	0	0			REV__ENSG00000204624|ENST00000294484|DISP3	REV__ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.28466796875	2	483.232364	964.450176	-0.39258	-0.00018971	2.5817	0.0012476	2.1891	0.0010579	483.233524080274	54.978	1.2646	54.832	54.389	55.653	-0.14609					61	34	2	0	0	0	0.024374	1	5852	5852		32.812	13.709	1	490960	+		53110	28626	37052	37113	58393	58393					-0.033471020987576594
NEGARCGRR	9	Unmodified	_NEGARCGRR_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-3|DZIP1	REV__nc|ENSG00000134874|Q86YF9-3|DZIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7525329589844	2	509.751598	1017.48864	3.2615	0.0016626	-1.6156	-0.00082355	1.6459	0.00083901	509.75062695804394	16.581	0.20879	16.581	16.489	16.698	0					9	6	2	0	0	0	1.0192	1	75	75		16.473	0.83134	1	25466	+		53111	36681	37053	37114	58394	58394					-0.019400749452188393
NEGARCGRR	9	Unmodified	_NEGARCGRR_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-3|DZIP1	REV__nc|ENSG00000134874|Q86YF9-3|DZIP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	509.751598	1017.48864	3.2615	0.0016626	-1.6156	-0.00082355	1.6459	0.00083901	509.75062695804394	16.581	0.20879	16.581	16.489	16.698	0	0.033751	-0.00081627	NaN	16.473	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25466	+		53112	36681	37053	37114							-0.019400749452188393
NEGARCGRR	9	Unmodified	_NEGARCGRR_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-3|DZIP1	REV__nc|ENSG00000134874|Q86YF9-3|DZIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.751598	1017.48864	0.37599	0.00019166	0.29801	0.00015191	0.674	0.00034357	509.75173523176534	16.661	0.16573	16.514	16.405	16.571	-0.14753	-0.033751	0.0011347	NaN	16.473	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8784.9	+		53113	36681	37053	37114							-0.019400749452188393
NEGASGIR	8	Unmodified	_NEGASGIR_					0	0	0		ENST00000562701.5_1_16:28997691-29001330:+|nuORF;nc|ENSG00000213658|O43561-5|LAT;nc|ENSG00000213658|O43561|LAT	ENST00000562701.5_1_16:28997691-29001330:+|nuORF	ENST00000562701.5_1_16:28997691-29001330:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	401.2620544433594	2	402.203941	802.39333	0.33349	0.00013413	3.9753	0.0015989	4.3088	0.001733	402.2054916130096	85.722	0.57888	85.665	85.355	85.934	-0.057617					19	13	2	0	0	0	0.027866	1	10690	10690		10.866	4.5529	1	58142			53114	16847	37054	37115	58395	58395					-0.01577104864611556
NEGAVPQFPI	10	Unmodified	_NEGAVPQFPI_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8153686523438	2	536.277106	1070.53966	0.1085	5.8183E-05	1.0877	0.00058332	1.1962	0.0006415	536.277629303965	71.307	0.45934	71.307	71.145	71.604	0					19	11	2	0	0	0	0.03519	1	8679	8679		35.152	0	1	655450	+		53115	36781	37055	37116	58396	58396					0.007211525806042118
NEGEAITKEY	10	Unmodified	_NEGEAITKEY_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.306884765625	2	577.272218	1152.52988	-0.8358	-0.00048248	4.4589	0.002574	3.6231	0.0020915	577.2745392959421	73.378	0.79686	73.113	72.81	73.607	-0.26479					36	19	3	0	0	0	0.03519	1	8594	8594		24.519	0	1	361830	+		53116	24805	37056	37117	58397	58397					-0.04028080215425689
NEGEKLQPM	9	Unmodified	_NEGEKLQPM_					0	0	0			REV__ENST00000468924.5_1_21:47711551-47711584:+|nuORF	REV__ENST00000468924.5_1_21:47711551-47711584:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2899780273438	2	523.252774	1044.491	-0.891	-0.00046622	-1.8165	-0.00095051	-2.7075	-0.0014167	523.2518160025087	57.052	0.51489	57.052	56.712	57.227	0					29	14	3	0	0	0	0.024292	1	6374	6374		40.778	3.6191	1	1069700	+		53117	33118	37057	37118	58398	58398					-0.029470840507883622
NEGEKVFE	8	Unmodified	_NEGEKVFE_					0	0	0		nc|ENSG00000172426|Q9H1X1-2|RSPH9;ENSG00000172426|ENST00000372163|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9;ENSG00000172426|ENST00000372163|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.26654052734375	2	476.224539	950.434526	0.23207	0.00011052	-3.8353	-0.0018264	-3.6032	-0.0017159	476.2241792457143	31.728	0.27026	31.487	31.295	31.565	-0.24109					11	6	2	0	0	0	0.027866	1	2116	2116		38.806	0	1	43101			53118	18519;8275	37058	37119	58399	58399					-0.042673886158013374
NEGFLLGLDP	10	Unmodified	_NEGFLLGLDP_					0	0	0		ENST00000553349.1_1_14:37754581-37892775:+|nuORF	ENST00000553349.1_1_14:37754581-37892775:+|nuORF	ENST00000553349.1_1_14:37754581-37892775:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7538452148438	2	537.776939	1073.53933	-0.556	-0.000299	-3.2829	-0.0017655	-3.8389	-0.0020645	537.7752687503076	25.648	0.57573	25.477	25.122	25.698	-0.17078					27	13	3	0	0	0	0.03519	1	1215	1215		42.864	0	1	149840			53119	16637	37059	37120	58400	58400					0.005497328607589225
NEGLEPNL	8	Unmodified	_NEGLEPNL_					0	0	0			REV__TRPM6|p.P1612L|1|0.27|ENSG00000119121|chr9:74755424-74755424|G/A|missense_variant	REV__TRPM6|p.P1612L|1|0.27|ENSG00000119121|chr9:74755424-74755424|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.7408142089844	2	443.219257	884.423961	-0.27442	-0.00012163	2.2839	0.0010123	2.0095	0.00089064	443.21974670413357	22.67	0.4617	22.67	22.479	22.94	0					18	9	2	0	0	0	0.027866	1	810	810		30.504	7.4612	1	53132	+		53120	37736	37060	37121	58401	58401					-0.022873712702448756
NEGLEPNL	8	Unmodified	_NEGLEPNL_					0	0	0			REV__TRPM6|p.P1612L|1|0.27|ENSG00000119121|chr9:74755424-74755424|G/A|missense_variant	REV__TRPM6|p.P1612L|1|0.27|ENSG00000119121|chr9:74755424-74755424|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.219257	884.423961	-0.7799	-0.00034567	1.2927	0.00057293	0.51275	0.00022726	443.219708661929	22.546	0.4245	22.62	22.413	22.837	0.073954	-0.025017	-0.00027338	NaN	23.042	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66701	+		53121	37736	37060	37121							-0.022873712702448756
NEGRIALVE	9	Unmodified	_NEGRIALVE_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7950744628906	2	500.774731	999.534909	0.55666	0.00027876	3.9685	0.0019873	4.5252	0.0022661	500.77658496286347	82.475	0.43545	82.255	82.043	82.478	-0.22015					14	9	2	0	0	0	0.024427	1	9952	9952		34.173	3.6689	1	69598	+		53122	28427	37061	37122	58402	58402					0.03512268437839339
NEGTGKSSW	9	Unmodified	_NEGTGKSSW_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6;ENST00000395675.4_1_17:18575090-18575600:-|nuORF;nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000150907|ENST00000379561|FOXO1;ENSG00000118689|ENST00000406360|FOXO3	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.21942138671875	2	483.219788	964.425024	0.36339	0.0001756	-0.33335	-0.00016108	0.030042	1.4517E-05	483.21947363173194	32.452	0.83678	32.26	31.942	32.779	-0.19261					46	19	4	0	0	0	0.42604	1	2227	2227		64.207	0.901	1	795400			53123	10296	37062	37123	58403	58403					-0.058611569013237386
NEGTGKSSWW	10	Unmodified	_NEGTGKSSWW_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6;ENST00000395675.4_1_17:18575090-18575600:-|nuORF;nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000150907|ENST00000379561|FOXO1;ENSG00000118689|ENST00000406360|FOXO3	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.7990112304688	2	576.259445	1150.50434	-1.171	-0.00067483	-1.0731	-0.00061836	-2.2441	-0.0012932	576.2587277088123	60.508	0.56185	60.332	59.96	60.521	-0.1761					14	11	2	0	0	0	0.03519	1	6709	6709		32.751	15.283	1	91370			53124	10296	37063	37124	58404	58404					-0.06489509947186889
NEGTGKSSWW	10	Unmodified	_NEGTGKSSWW_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6;ENST00000395675.4_1_17:18575090-18575600:-|nuORF;nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000150907|ENST00000379561|FOXO1;ENSG00000118689|ENST00000406360|FOXO3	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.259445	1150.50434	-1.1769	-0.00067821	-2.2089	-0.0012729	-3.3858	-0.0019511	576.2580527475138	60.237	0.36847	60.237	60.104	60.473	0	-0.065141	0.00030621	NaN	14.694	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336240			53125	10296	37063	37124							-0.06489509947186889
NEGTGKSSWW	10	Unmodified	_NEGTGKSSWW_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6;ENST00000395675.4_1_17:18575090-18575600:-|nuORF;nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000150907|ENST00000379561|FOXO1;ENSG00000118689|ENST00000406360|FOXO3	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	576.259445	1150.50434	-0.57669	-0.00033233	-3.1546	-0.0018179	-3.7313	-0.0021502	576.2575606446082	60.49	0.41228	60.277	60.118	60.531	-0.21339	-0.025327	-0.00078379	NaN	14.694	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315900			53126	10296	37063	37124							-0.06489509947186889
NEGTGKSSWW	10	Unmodified	_NEGTGKSSWW_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6;ENST00000395675.4_1_17:18575090-18575600:-|nuORF;nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000150907|ENST00000379561|FOXO1;ENSG00000118689|ENST00000406360|FOXO3	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.259445	1150.50434	-2.1444	-0.0012357	-1.0896	-0.0006279	-3.234	-0.0018636	576.2589613497056	60.151	0.59806	60.23	60.049	60.647	0.078884	-0.071888	0.0015962	NaN	14.694	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264760			53127	10296	37063	37124							-0.06489509947186889
NEGWSVSVV	9	Unmodified	_NEGWSVSVV_					0	0	0			REV__ENSG00000141574|ENST00000269389|SECTM1	REV__ENSG00000141574|ENST00000269389|SECTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7568664550781	2	488.740357	975.46616	-0.97092	-0.00047453	1.2192	0.00059588	0.2483	0.00012136	488.74079616214715	37.515	0.65079	37.296	37.037	37.688	-0.2195					33	16	3	0	0	0	0.024021	1	2995	2995		68.787	29.981	1	1100100	+		53128	24108	37064	37125	58405	58405					-0.022553958618459546
NEGYSWNNQI	10	Unmodified	_NEGYSWNNQI_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	612.765869140625	2	612.767634	1223.52072	0.27601	0.00016913	-3.8821	-0.0023788	-3.6061	-0.0022097	612.7651086115376	61.743	0.68536	61.517	61.189	61.874	-0.22663					40	17	3	0	0	0	1.0002	1	7124	7124		45.972	3.108	1	2271900	+		53129	28147	37065	37126	58406	58406					-0.08210428781103474
NEHLHKLE	8	Unmodified	_NEHLHKLE_					0	0	0			REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.251220703125	2	510.267073	1018.51959	-0.0090396	-4.6126E-06	2.7395	0.0013979	2.7304	0.0013932	510.2707297630451	47.478	0.52092	47.209	47.013	47.534	-0.26939					16	13	3	0	0	0	0.027866	1	4602	4602		45.972	1.4412	1	107370	+		53130	20670	37066	37127	58407	58407					0.011074016406723786
NEHLHKQT	8	Unmodified	_NEHLHKQT_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7665100097656	2	503.756872	1005.49919	0.53441	0.00026921	3.5942	0.0018106	4.1286	0.0020798	503.7586039119086	58.626	0.5822	58.717	58.486	59.068	0.091221					26	15	2	0	0	0	0.027866	1	6549	6549		29.15	0	1	670230			53131	18383	37067	37128	58408	58408					-0.0033376901915289636
NEHPIMIE	8	Unmodified	_NEHPIMIE_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.200927734375	2	491.73676	981.458967	-0.55648	-0.00027364	2.1307	0.0010477	1.5742	0.0007741	491.7377630568641	42.064	0.25045	41.941	41.786	42.037	-0.12299					12	6	2	0	0	0	0.027866	1	3762	3762		19.36	0	1	138620	+		53132	21294	37068	37129	58409	58409					-0.032504517339248196
NEHVSQVF	8	Unmodified	_NEHVSQVF_					0	0	0		ENST00000414932.1_1_7:43908445-43909104:-|nuORF	ENST00000414932.1_1_7:43908445-43909104:-|nuORF	ENST00000414932.1_1_7:43908445-43909104:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.23248291015625	2	480.232699	958.450845	-0.57743	-0.0002773	0.49775	0.00023904	-0.079673	-3.8262E-05	480.2328305282439	30.988	1.1603	30.803	30.36	31.52	-0.18486					73	28	5	0	0	0	0.42327	1	2020	2020		94.006	0	1	3145100			53133	13866	37069	37130	58410	58410					-0.030042626590443433
NEIDSFLKV	9	Unmodified	_NEIDSFLKV_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7879638671875	2	532.784764	1063.55498	-1.0654	-0.00056761	2.3356	0.0012443	1.2702	0.00067673	532.786550402359	45.818	1.0487	45.615	45.358	46.406	-0.20226					100	28	5	0	0	0	0.15029	1	4359	4359		99.375	14.459	1	29683000	+		53134	23950	37070	37131	58411	58411					0.025740193778119647
NEIEANSESCD	11	Unmodified	_NEIEANSESCD_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.21710205078125	3	404.155797	1209.44556	-0.53745	-0.00021721	-0.97789	-0.00039522	-1.5153	-0.00061243	404.1552701250651	32.745	0.80159	32.579	32.315	33.117	-0.16565					48	19	4	0	0	0	0.024735	1	2225	2225		11.932	0	1	1376100	+		53135	22185	37071	37132	58412	58412					-0.15078399094500128
NEIEDHCLSKS	11	Unmodified	_NEIEDHCLSKS_					0	0	0			REV__ENST00000468979.1_1_20:3782308-3783795:+|nuORF	REV__ENST00000468979.1_1_20:3782308-3783795:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7484436035156	3	425.527565	1273.56087	-0.42863	-0.00018239	-3.7235	-0.0015844	-4.1521	-0.0017668	425.5259663068261	26.232	0.2947	25.995	25.803	26.098	-0.23603					13	8	2	0	0	0	0.024759	1	1333	1333		17.833	7.7292	1	193180	+		53136	21205	37072	37133	58413	58413					-0.06497250172856184
NEIEFKESD	9	Unmodified	_NEIEFKESD_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.2893676757812	2	555.751118	1109.48768	0.00017131	9.5206E-08	3.5782	0.0019886	3.5783	0.0019887	555.7528418365209	67.026	0.53483	67.05	66.855	67.389	0.023911					19	12	2	0	0	0	0.024438	1	7957	7957		22.58	0	1	237880	+		53137	22909	37073	37134	58414	58414					-0.06268055623786495
NEIGGNVNL	9	Unmodified	_NEIGGNVNL_					0	0	0			REV__ENSG00000010270|ENST00000009041|STARD3NL	REV__ENSG00000010270|ENST00000009041|STARD3NL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2872619628906	2	465.237981	928.461409	-0.21707	-0.00010099	-1.7853	-0.00083059	-2.0024	-0.00093158	465.2386684447612	75.559	0.35584	75.3	75.24	75.596	-0.25866					12	8	2	0	0	0	0.024447	1	8957	8957		25.574	2.5316	1	116690	+		53138	19900	37074	37135	58415	58415					-0.005682800046201919
NEIHNRETRRL	11	Unmodified	_NEIHNRETRRL_					0	0	0			REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2743835449219	3	479.927162	1436.75966	0.16984	8.151E-05	-1.2298	-0.0005902	-1.0599	-0.00050869	479.9266157703191	39.244	0.61969	39.018	38.736	39.356	-0.2257					36	16	3	0	0	0	0.024779	1	3331	3331		27.644	0	1	234650	+		53139	36975	37075	37136	58416	58416					0.05874771240883092
NEIILFKGV	9	Unmodified	_NEIILFKGV_					0	0	0		ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2894897460938	2	516.808042	1031.60153	-0.65441	-0.0003382	-2.8566	-0.0014763	-3.511	-0.0018145	516.8063680103766	34.437	0.61711	34.437	34.129	34.746	0					36	15	3	0	0	0	0.024506	1	2531	2531		23.042	0	1	1255600			53140	827	37076	37137	58417	58417					0.08699503999764602
NEIKIFMVNL	10	Unmodified	_NEIKIFMVNL_					0	0	0		ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.7374267578125	3	407.56177	1219.66348	-1.118	-0.00045564	-0.53692	-0.00021883	-1.6549	-0.00067447	407.8962418569838	37.825	0.29263	37.606	37.463	37.755	-0.21849					10	7	2	0	0	0	0.03519	1	3035	3035		27.047	7.0168	1	39676			53141	7937	37077	37138	58418	58418					0.062434873565962334
NEIKILSH	8	Unmodified	_NEIKILSH_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26666259765625	2	477.274367	952.53418	-1.2662	-0.00060431	1.2467	0.00059502	-0.019464	-9.2896E-06	477.27476915636976	49.186	0.70604	49.26	48.987	49.693	0.074196					30	18	2	0	0	0	0.027866	1	4976	4976		31.53	7.3271	1	622140	+		53142	26284	37078	37139	58419	58419					0.05601473788817657
NEIKQIGN	8	Unmodified	_NEIKQIGN_					0	0	0			REV__nc|ENSG00000154099|Q8NEP3-3|DNAAF1	REV__nc|ENSG00000154099|Q8NEP3-3|DNAAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2590026855469	2	458.248349	914.482145	-0.38174	-0.00017493	-0.47829	-0.00021918	-0.86004	-0.00039411	458.24784352500916	28.637	0.67156	28.633	28.117	28.789	-0.0042					31	15	3	0	0	0	0.027866	1	1610	1610		19.104	0	1	367690	+		53143	24932	37079	37140	58420	58420					0.021483103750597365
NEIKRIFI	8	Unmodified	_NEIKRIFI_					0	0	0		ENST00000302418.4_1_10:32298185-32298251:-|nuORF	ENST00000302418.4_1_10:32298185-32298251:-|nuORF	ENST00000302418.4_1_10:32298185-32298251:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.28173828125	2	516.813659	1031.61277	-0.06248	-3.229E-05	-0.61632	-0.00031852	-0.6788	-0.00035081	516.8134646185043	74.815	0.64287	74.815	74.551	75.194	0					30	15	3	0	0	0	0.027866	1	9152	9152		45.972	0	1	567220			53144	11955	37080	37141	58421	58421					0.09822326093899392
NEILFKLR	8	Unmodified	_NEILFKLR_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7844848632812	2	516.813659	1031.61277	-1.1889	-0.00061446	-0.46071	-0.0002381	-1.6496	-0.00085256	516.8135868925664	93.69	0.69678	93.55	93.309	94.006	-0.13995					26	15	2	0	0	0	0.027866	1	11561	11561		20.947	0	1	78428	+		53145	25067	37081	37142	58422	58422					0.09822326093899392
NEILFPFYD	9	Unmodified	_NEILFPFYD_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4;PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.8408203125	2	579.279315	1156.54408	-1.0433	-0.00060437	0.67852	0.00039305	-0.3648	-0.00021132	579.2796105967328	89.871	1.0461	89.743	89.159	90.205	-0.12775					42	24	3	0	0	0	0.024541	1	11005	11005		30.504	7.4612	1	266090			53146	15486	37082	37143	58423	58423					-0.027933829964695178
NEILFPFYD	9	Unmodified	_NEILFPFYD_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4;PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	579.279315	1156.54408	-0.87403	-0.00050631	0.40231	0.00023305	-0.47172	-0.00027326	579.2795824935482	89.829	0.58603	89.666	89.429	90.015	-0.1626	-0.059622	3.8256E-05	NaN	30.504	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319960			53147	15486	37082	37143							-0.027933829964695178
NEILFPFYD	9	Unmodified	_NEILFPFYD_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4;PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	579.279315	1156.54408	-0.19494	-0.00011293	-0.036015	-2.0863E-05	-0.23096	-0.00013379	579.279098226144	89.906	1.219	89.768	89.189	90.408	-0.13824	0.042017	-0.00046957	NaN	30.504	52	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305470			53148	15486	37082	37143							-0.027933829964695178
NEILFQILL	9	Unmodified	_NEILFQILL_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.3241577148438	2	551.828975	1101.6434	-0.25706	-0.00014185	0.56541	0.00031201	0.30835	0.00017016	552.3310910186466	107.43	0.13977	107.43	107.34	107.48	-0.003479					7	5	2	0	0	0	0.15366	1	13750	13750		98.629	8.2596	1	327650	+		53149	23777	37083	37144	58424	58424					0.09664059688270754
NEILFQILL	9	Unmodified	_NEILFQILL_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	551.828975	1101.6434	-0.25706	-0.00014185	0.56541	0.00031201	0.30835	0.00017016	552.3310910186466	107.43	0.13977	107.43	107.34	107.48	-0.003479	0.079957	0.00038086	NaN	98.629	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327650	+		53150	23777	37083	37144							0.09664059688270754
NEILFQILL	9	Unmodified	_NEILFQILL_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.828975	1101.6434	-0.11488	-6.3392E-05	0.1455	8.029E-05	0.030622	1.6898E-05	551.8286450426788	107.44	0.21803	107.32	107.13	107.35	-0.1238	-0.025091	-8.2576E-05	NaN	98.629	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109100	+		53151	23777	37083	37144							0.09664059688270754
NEILFQILL	9	Unmodified	_NEILFQILL_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	551.828975	1101.6434	0.49711	0.00027432	-0.50508	-0.00027872	-0.0079735	-4.4E-06	551.8278997177085	107.45	0.10127	107.29	107.2	107.3	-0.15772	-0.054866	-0.00080059	NaN	98.629	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93645	+		53152	23777	37083	37144							0.09664059688270754
NEILGEEDLE	10	Unmodified	_NEILGEEDLE_					0	0	0			REV__nc|ENSG00000145428|Q8N4F7-2|RNF175	REV__nc|ENSG00000145428|Q8N4F7-2|RNF175	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	580.3091430664062	2	580.769508	1159.52446	-1.8714	-0.0010868	-0.48916	-0.00028409	-2.3605	-0.0013709	580.7700715753821	64.879	0.53371	64.616	64.417	64.95	-0.2626					20	13	2	0	0	0	0.03519	1	7593	7593		29.17	0	1	117960	+		53153	24408	37084	37145	58425	58425					-0.04891803797909233
NEILGEEDLE	10	Unmodified	_NEILGEEDLE_					0	0	0			REV__nc|ENSG00000145428|Q8N4F7-2|RNF175	REV__nc|ENSG00000145428|Q8N4F7-2|RNF175	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	580.769508	1159.52446	-1.628	-0.00094549	-3.361	-0.0019519	-4.9889	-0.0028974	580.7677638661423	64.635	0.26408	64.635	64.499	64.763	0	0.0094335	-0.0010124	NaN	56.434	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158780	+		53154	24408	37084	37145							-0.04891803797909233
NEIMRFGF	8	Unmodified	_NEIMRFGF_					0	0	0			REV__ENST00000283875.5_1_3:120501221-120501314:+|nuORF	REV__ENST00000283875.5_1_3:120501221-120501314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3006591796875	2	507.247295	1012.48004	-0.7513	-0.00038109	2.371	0.0012027	1.6197	0.00082158	507.7506124573813	32.543	0.22207	32.543	32.457	32.679	0					7	5	2	0	0	0	0.027866	1	2256	2256		18.324	0	1	48413	+		53155	29905	37085	37146	58426	58426					-0.025704416343955927
NEINKGMEEF	10	Unmodified	_NEINKGMEEF_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1;REV__ENSG00000122728|ENST00000242310|TAF1L	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.2012634277344	3	404.185139	1209.53359	0.65021	0.00026281	2.0102	0.00081251	2.6604	0.0010753	404.18560983688536	20.754	0.1953	20.586	20.444	20.639	-0.16774					5	3	2	0	0	0	0.03519	1	581	581		26.063	6.8007	1	6427	+		53156	36762;22661	37086	37147	58427	58427					-0.06279733713199676
NEIQNKKY	8	Unmodified	_NEIQNKKY_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7926635742188	2	518.774731	1035.53491	1.2083	0.00062682	-3.2922	-0.0017079	-2.0839	-0.0010811	519.2762041590111	63.924	0.43121	63.924	63.666	64.097	0					17	11	2	0	0	0	0.027866	1	7524	7524		23.042	10.083	1	496790	+		53157	28722	37087	37148	58428	58428					0.018562684378593985
NEIQNKKY	8	Unmodified	_NEIQNKKY_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7929077148438	2	518.774731	1035.53491	-0.15093	-7.8297E-05	-0.43729	-0.00022686	-0.58822	-0.00030515	519.2766445659311	64.141	0.50773	63.889	63.659	64.166	-0.25141					20	13	2	0	0	0	0.027866	1	7543	7543		38.806	0	1	321940	+		53158	28722	37087	37148	58429	58429					0.018562684378593985
NEIQRLLP	8	Unmodified	_NEIQRLLP_					0	0	0			REV__ENSG00000144747|ENST00000398559|TMF1	REV__ENSG00000144747|ENST00000398559|TMF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.8055419921875	2	491.787641	981.56073	-0.28631	-0.0001408	-4.3449	-0.0021368	-4.6312	-0.0022776	491.78622018186525	60.026	0.17653	59.825	59.761	59.938	-0.20016					7	4	2	0	0	0	0.027866	1	6870	6870		31.955	0	1	171720	+		53159	24359	37088	37149	58430	58430					0.06921162680146153
NEISFINNN	9	Unmodified	_NEISFINNN_					0	0	0			REV__nc|ENSG00000169851|O60245|PCDH7	REV__nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7879638671875	2	532.753995	1063.49344	-0.89373	-0.00047614	0.71091	0.00037874	-0.18282	-9.7399E-05	533.2555171751787	45.543	0.40655	45.34	45.226	45.632	-0.20226					21	11	2	0	0	0	0.023061	1	4359	4359		90.37	7.6193	1	253690	+		53160	26402	37089	37150	58431	58431					-0.035769123214549836
NEISFTTK	8	Unmodified	_NEISFTTK_					0	0	0		nc|ENSG00000264058|Q8N1A0-2|KRT222;ENSG00000213424|ENST00000394052|KRT222;CON__Q8N1A0	nc|ENSG00000264058|Q8N1A0-2|KRT222	nc|ENSG00000264058|Q8N1A0-2|KRT222	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.76904296875	2	470.242732	938.470912	-0.2297	-0.00010801	0.66574	0.00031306	0.43604	0.00020504	470.2429704657505	35.571	0.54869	35.359	34.963	35.511	-0.21246					16	13	2	0	0	0	0.027866	1	2718	2718		60.118	16.001	1	104850		+	53161	567	37090	37151	58432	58432					-0.0007851171909578625
NEISKIESEA	10	Unmodified	_NEISKIESEA_					0	0	0		nc|ENSG00000128606|Q8N6Y2-2|LRRC17;LRRC17|p.H425Tfs*2|1|0.36|ENSG00000128606|chr7:102944545-102944546|-/A|frameshift_variant;ENSG00000128606|ENST00000339431|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2703857421875	2	560.280043	1118.54553	-0.87029	-0.0004876	1.5977	0.00089515	0.72739	0.00040754	560.2808337145578	26.721	0.53602	26.558	26.344	26.88	-0.16331					21	12	2	0	0	0	0.03519	1	1395	1395		51.193	0	1	215630			53162	4302	37091	37152	58433	58433					-0.008997936983632826
NEISKIESEAF	11	Unmodified	_NEISKIESEAF_					0	0	0		nc|ENSG00000128606|Q8N6Y2-2|LRRC17;LRRC17|p.H425Tfs*2|1|0.36|ENSG00000128606|chr7:102944545-102944546|-/A|frameshift_variant;ENSG00000128606|ENST00000339431|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.25836181640625	3	422.878592	1265.61395	-0.53421	-0.00022591	-3.4781	-0.0014708	-4.0123	-0.0016967	422.8772639776021	27.291	0.92159	27.291	26.658	27.58	0					39	23	3	0	0	0	0.024778	1	1473	1473		25.892	0	1	368440			53163	4302	37092	37153	58434	58434					-0.00823549118513256
NEITSNYKQQT	11	Unmodified	_NEITSNYKQQT_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.7879943847656	3	442.549246	1324.62591	-0.39979	-0.00017693	4.2406	0.0018767	3.8408	0.0016997	442.55106376939324	42.792	0.86816	42.554	42.268	43.136	-0.23736					53	22	4	0	0	0	0.024734	1	3951	3951		14.243	0	1	869130			53164	5881	37093	37154	58435	58435					-0.02341932375338729
NEKAIRMM	8	Unmodified	_NEKAIRMM_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2;REV__JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7615661621094	2	496.75443	991.494306	1.4001	0.00069552	2.5074	0.0012456	3.9075	0.0019411	496.755820005175	64.146	0.50352	64.146	63.88	64.384	0					29	13	3	0	0	0	0.027866	1	7571	7571		18.324	0	1	1181900	+		53165	20990;36164;36165	37094	37155	58436	58436					-0.00178112477783543
NEKAIRMM	8	Unmodified	_NEKAIRMM_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2;REV__JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.75443	991.494306	-0.34001	-0.0001689	4.7143	0.0023419	4.3743	0.002173	496.7569638674877	64.39	0.47777	64.128	63.901	64.379	-0.2626	-0.036137	0.0015909	NaN	30.504	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1179700	+		53166	20990;36164;36165	37094	37155							-0.00178112477783543
NEKAIRMM	8	Unmodified	_NEKAIRMM_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2;REV__JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.75443	991.494306	1.3124	0.00065193	1.304	0.00064777	2.6164	0.0012997	496.7556343471947	64.172	0.78845	64.217	63.546	64.335	0.045502	0.053723	-0.0017973	NaN	30.504	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1163500	+		53167	20990;36164;36165	37094	37155							-0.00178112477783543
NEKARALKQ	9	Unmodified	_NEKARALKQ_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.318603515625	2	529.309272	1056.60399	-0.85562	-0.00045289	0.18255	9.6624E-05	-0.67307	-0.00035626	529.3092617758814	39.088	0.52354	39.088	38.868	39.391	0					36	14	4	0	0	0	0.024447	1	3358	3358		40.778	18.818	1	1129400			53168	3348	37095	37156	58437	58437					0.0779535245740135
NEKDFVVRQ	9	Unmodified	_NEKDFVVRQ_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.31298828125	2	567.798737	1133.58292	-0.75628	-0.00042942	2.616	0.0014853	1.8597	0.0010559	567.8003829945463	61.467	0.82816	61.538	61.022	61.85	0.071129					49	21	3	0	0	0	0.022411	1	7006	7006		113.41	33.961	1	1011100			53169	1396	37096	37157	58438	58438					0.021473423578981965
NEKDMYLVP	9	Unmodified	_NEKDMYLVP_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L195Ffs*6|1|0.3|ENSG00000186141|chr1:145826998-145826999|-/T|frameshift_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.830078125	2	554.7708	1107.52705	0.11078	6.1455E-05	-1.3911	-0.00077177	-1.2804	-0.00071031	554.771126814939	90.232	1.1339	90.094	89.231	90.365	-0.13825					40	26	3	0	0	0	0.024354	1	10986	10986		30.504	11.4	1	117060			53170	9519	37097	37158	58439	58439					-0.022416268739334555
NEKESSQRR	9	Unmodified	_NEKESSQRR_					0	0	0			REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF	REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7674560546875	2	567.286525	1132.5585	-0.76229	-0.00043244	1.1998	0.00068064	0.43753	0.0002482	567.287016858326	41.334	0.48667	41.357	41.111	41.597	0.023006					19	13	2	0	0	0	0.02435	1	3632	3632		60.972	2.19	1	138310	+		53171	20841	37098	37159	58440	58440					-0.002479177956274725
NEKGWNYILEK	11	Unmodified	_NEKGWNYILEK_					0	0	0		ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENST00000440465.1_1_10:36811746-36813066:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.28680419921875	3	465.241865	1392.70376	-0.24954	-0.0001161	2.4712	0.0011497	2.2217	0.0010336	465.2432241936549	75.512	0.61706	75.253	74.821	75.438	-0.25866					27	14	4	0	0	0	0.024738	1	8921	8921		25.068	0	1	293510			53172	2726	37099	37160	58441	58441					0.02312125280695909
NEKIGLFVT	9	Unmodified	_NEKIGLFVT_					0	0	0			REV__ENST00000343916.7_1_20:61461923-61467875:+|nuORF	REV__ENST00000343916.7_1_20:61461923-61467875:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2593688964844	2	510.78985	1019.56515	-1.173	-0.00059915	-1.1715	-0.00059837	-2.3445	-0.0011975	510.78882469507533	24.364	0.48984	24.316	24.088	24.578	-0.047146					13	10	2	0	0	0	0.024397	1	1075	1075		47.657	6.8792	1	35027	+		53173	30674	37100	37161	58442	58442					0.056146271030456774
NEKIHDLLV	9	Unmodified	_NEKIHDLLV_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8057250976562	2	540.806031	1079.59751	-0.80283	-0.00043417	0.68167	0.00036865	-0.12116	-6.5522E-05	540.8062276067777	60.057	1.7867	59.857	59.393	61.179	-0.20016					100	34	5	0	0	0	0.37611	1	6846	6846		67.494	11.989	1	6953200			53174	3670	37101	37162	58443	58443					0.060894145060501614
NEKIHDLLV	9	Unmodified	_NEKIHDLLV_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.805908203125	2	540.806031	1079.59751	-1.1773	-0.00063669	1.1304	0.00061132	-0.046922	-2.5376E-05	540.806492624299	59.697	1.7213	59.783	59.351	61.073	0.085686					118	45	5	0	0	0	0.5973	1	6731	6731		52.937	16.49	1	5853600			53175	3670	37101	37162	58444	58444					0.060894145060501614
NEKILRDF	8	Unmodified	_NEKILRDF_					0	0	0		ENST00000422003.6_1_11:120930721-120957500:+|nuORF	ENST00000422003.6_1_11:120930721-120957500:+|nuORF	ENST00000422003.6_1_11:120930721-120957500:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8258666992188	2	517.785099	1033.55564	-0.7376	-0.00038192	0.12689	6.5703E-05	-0.61071	-0.00031622	517.785136545615	56.654	0.50638	56.489	56.239	56.745	-0.16431					35	13	4	0	0	0	0.027866	1	6339	6339		55.504	4.3115	1	563580			53176	14002	37102	37163	58445	58445					0.040208588175119075
NEKIPKND	8	Unmodified	_NEKIPKND_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26348876953125	2	479.253631	956.49271	-1.2466	-0.00059745	0.78572	0.00037656	-0.46091	-0.00022089	479.25410286230436	38.792	0.67634	38.819	38.462	39.138	0.027279					28	17	2	0	0	0	0.027866	1	3270	3270		26.693	0	1	660280	+		53177	20551	37103	37164	58446	58446					0.012722930294785328
NEKIRTLVP	9	Unmodified	_NEKIRTLVP_					0	0	0			REV__ENSG00000110328|ENST00000227756|GALNT18	REV__ENSG00000110328|ENST00000227756|GALNT18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3055419921875	2	535.321848	1068.62914	-0.96488	-0.00051652	-2.7714	-0.0014836	-3.7362	-0.0020001	535.8200941632134	48.333	0.69025	48.333	48.105	48.795	0					31	19	3	0	0	0	0.024397	1	4946	4946		47.657	20.964	1	262540	+		53178	21852	37104	37165	58447	58447					0.09757407259962747
NEKKLNLAF	9	Unmodified	_NEKKLNLAF_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1;YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.791259765625	2	538.808574	1075.60259	-0.22618	-0.00012187	2.5378	0.0013674	2.3116	0.0012455	538.8091505454274	59.032	0.1544	58.79	58.7	58.854	-0.24165					5	3	2	0	0	0	0.024436	1	6495	6495		23.042	0	1	74083			53179	1763	37105	37166	58448	58448					0.06781718368642942
NEKKNFLSGLS	11	Unmodified	_NEKKNFLSGLS_					0	0	0			REV__ENSG00000102401|ENST00000471229|ARMCX3	REV__ENSG00000102401|ENST00000471229|ARMCX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	412.23065185546875	3	412.890944	1235.651	-0.67765	-0.0002798	1.1367	0.00046932	0.45901	0.00018952	412.89128451431253	26.971	0.4082	27.053	26.799	27.208	0.081291					12	10	2	0	0	0	0.024735	1	1403	1403		21.78	5.7737	1	71971	+		53180	21309	37106	37167	58449	58449					0.04260167217898925
NEKKNFLSGLS	11	Unmodified	_NEKKNFLSGLS_					0	0	0			REV__ENSG00000102401|ENST00000471229|ARMCX3	REV__ENSG00000102401|ENST00000471229|ARMCX3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	412.890944	1235.651	0.52264	0.00021579	-0.5314	-0.00021941	-0.0087639	-3.6185E-06	412.89057006957466	27.129	0.37761	27.129	26.908	27.286	0	0.040264	-0.00063493	NaN	21.78	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65903	+		53181	21309	37106	37167							0.04260167217898925
NEKKNFLSGLS	11	Unmodified	_NEKKNFLSGLS_					0	0	0			REV__ENSG00000102401|ENST00000471229|ARMCX3	REV__ENSG00000102401|ENST00000471229|ARMCX3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	412.890944	1235.651	0.066198	2.7333E-05	-0.21443	-8.8535E-05	-0.14823	-6.1202E-05	412.8908881297889	27.097	0.37219	27.084	26.869	27.241	-0.012983	-0.0042748	-0.0002423	NaN	21.78	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126440	+		53182	21309	37106	37167							0.04260167217898925
NEKKPRPKVPL	11	Unmodified	_NEKKPRPKVPL_					0	0	0			REV__SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	REV__SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2117004394531	3	435.938228	1304.79285	-0.035777	-1.5596E-05	-0.44751	-0.00019509	-0.48328	-0.00021068	435.93831834645005	43.162	0.51127	43.023	42.773	43.284	-0.13929					17	13	2	0	0	0	0.024801	1	3974	3974		12.957	0	1	94441	+		53183	21452	37107	37168	58450	58450					0.15265005030892098
NEKKVRPKRK	10	Unmodified	_NEKKVRPKRK_					0	0	0			REV__nc|ENSG00000173575|O14647-2|CHD2	REV__nc|ENSG00000173575|O14647-2|CHD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.302734375	3	428.273722	1281.79934	0.40177	0.00017207	1.6807	0.00071978	2.0824	0.00089185	428.27441224184594	63.157	0.49003	62.936	62.691	63.181	-0.22097					26	11	3	0	0	0	0.03519	1	7108	7108		19.263	0	1	405850	+		53184	26786	37108	37169	58451	58451					0.16970942982243287
NEKLAELFL	9	Unmodified	_NEKLAELFL_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.802490234375	2	538.802957	1075.59136	-0.4154	-0.00022382	-0.4631	-0.00024952	-0.8785	-0.00047334	538.8026564013173	93.815	3.0985	93.815	93.429	96.527	0					196	73	5	0	0	0	0.12602	1	11982	11982		104.75	5.3716	1	13183000	+		53185	25144	37109	37170	58452	58452					0.05658896274530889
NEKLAELFL	9	Unmodified	_NEKLAELFL_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8027954101562	2	538.802957	1075.59136	-1.1978	-0.00064539	0.45553	0.00024544	-0.74228	-0.00039994	538.8031436333358	93.829	2.7283	93.834	93.391	96.119	0.0059814					181	64	5	0	0	0	0.10174	1	11892	11892		110.12	7.3465	1	13029000	+		53186	25144	37109	37170	58453	58453					0.05658896274530889
NEKLAELFL	9	Unmodified	_NEKLAELFL_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8031005859375	2	538.802957	1075.59136	-0.086687	-4.6707E-05	-0.31401	-0.00016919	-0.4007	-0.0002159	538.8026445515942	93.684	1.7077	93.562	93.234	94.942	-0.12215					106	39	4	0	0	0	0.17822	1	11537	11537		93.195	5.4412	1	3274100	+		53187	25144	37109	37170	58454	58454					0.05658896274530889
NEKLAELFL	9	Unmodified	_NEKLAELFL_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8028564453125	2	538.802957	1075.59136	-0.88387	-0.00047623	0.52215	0.00028133	-0.36172	-0.0001949	538.8030703617362	93.776	1.626	93.628	93.217	94.843	-0.14758					107	37	4	0	0	0	0.15366	1	11518	11518		98.629	7.8527	1	3298000	+		53188	25144	37109	37170	58455	58455					0.05658896274530889
NEKLFNGEFT	10	Unmodified	_NEKLFNGEFT_					0	0	0		ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	ENSG00000109929|ENST00000264027|SC5D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	598.81787109375	2	599.790578	1197.5666	0.44748	0.00026839	-1.0345	-0.00062049	-0.58702	-0.00035209	599.7901916670421	74.375	0.5083	74.375	74.084	74.593	0					15	11	2	0	0	0	0.03519	1	9068	9068		23.523	6.0547	1	36523			53189	3005	37110	37171	58456	58456					-0.024277835988641527
NEKLPGIL	8	Unmodified	_NEKLPGIL_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.7879638671875	2	442.26601	882.517468	-1.0026	-0.0004434	1.7079	0.00075537	0.70539	0.00031197	442.26671186317037	40.699	0.68929	40.468	40.196	40.886	-0.23029					26	18	2	0	0	0	0.027866	1	3525	3525		40.573	0	1	372840	+		53190	36711	37111	37172	58457	58457					0.07150972902854846
NEKLRDTP	8	Unmodified	_NEKLRDTP_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2;ENST00000600533.2_1_19:18273013-18273383:+|nuORF	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2886657714844	2	486.759081	971.503609	0.58298	0.00028377	0.52189	0.00025404	1.1049	0.00053781	486.75839081050225	58.917	0.95057	58.917	58.531	59.482	0					36	25	2	0	0	0	0.027866	1	6649	6649		21.96	0	1	233640			53191	2702	37112	37173	58458	58458					0.01671695403740614
NEKLSPKPG	9	Unmodified	_NEKLSPKPG_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2618408203125	2	485.271824	968.529095	0.25673	0.00012458	2.5222	0.001224	2.7789	0.0013485	485.27341672068246	56.739	0.15155	56.537	56.482	56.633	-0.20209					5	3	2	0	0	0	0.024477	1	6172	6172		27.882	0	1	45776			53192	5616	37113	37174	58459	58459					0.043571699261860886
NEKMHHYINEV	11	Unmodified	_NEKMHHYINEV_					0	0	0		nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;MYO16|p.F842Sfs*17|1|0.18|ENSG00000041515|chr13:109009038-109009038|T/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;MYO16|p.D1054Ffs*16|1|0.18|ENSG00000041515|chr13:109055484-109055490|TTGATAA/-|frameshift_variant	nc|ENSG00000041515|Q9Y6X6|MYO16	nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2615966796875	3	471.890838	1412.65068	-0.14904	-7.0331E-05	2.9404	0.0013876	2.7914	0.0013172	471.8921084883297	25.906	0.59655	25.883	25.567	26.164	-0.023088					27	13	3	0	0	0	0.024789	1	1299	1299		4.6433	0	1	183500			53193	1071	37114	37175	58460	58460					-0.03913575773594857
NEKMIHRTIY	10	Unmodified	_NEKMIHRTIY_					0	0	0			REV__ENSG00000169684|ENST00000299565|CHRNA5	REV__ENSG00000169684|ENST00000299565|CHRNA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7922058105469	3	435.564173	1303.67069	-0.017952	-7.8191E-06	3.948	0.0017196	3.93	0.0017118	435.9003565224804	33.167	0.23903	32.967	32.855	33.094	-0.20019					6	5	2	0	0	0	0.03519	1	2335	2335		14.694	0	1	49282	+		53194	26392	37115	37176	58461	58461					0.03100219957036643
NEKPVLLL	8	Unmodified	_NEKPVLLL_					0	0	0			REV__nc|ENSG00000131652|Q86W42-3|THOC6	REV__nc|ENSG00000131652|Q86W42-3|THOC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2784729003906	2	463.289485	924.564418	-0.51605	-0.00023908	1.4201	0.00065793	0.90407	0.00041884	463.2899211458889	51.544	0.86475	51.397	51.12	51.985	-0.14735					33	24	2	0	0	0	0.027866	1	5398	5398		17.365	0.89182	1	434610	+		53195	23224	37116	37177	58462	58462					0.09911832453997249
NEKRSYVSC	9	Unmodified	_NEKRSYVSC_					0	0	0		chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.25244140625	2	543.255848	1084.49714	-1.1953	-0.00064935	-2.1216	-0.0011526	-3.3169	-0.0018019	543.2543242753125	44.521	0.75854	44.416	44.064	44.823	-0.10468					47	19	3	0	0	0	0.72494	1	4166	4166		44.377	1.981	1	921940			53196	398	37117	37178	58463	58463					-0.041725658192717674
NEKRSYVSC	9	Unmodified	_NEKRSYVSC_					0	0	0		chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.255848	1084.49714	-0.96473	-0.0005241	-2.6917	-0.0014623	-3.6564	-0.0019864	543.254220048548	44.716	0.76617	44.468	44.183	44.949	-0.24759	0.0081093	-0.00032005	NaN	44.377	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944620			53197	398	37117	37178							-0.041725658192717674
NEKRSYVSC	9	Unmodified	_NEKRSYVSC_					0	0	0		chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	chr5:135574267-135574572|294|10.11|0.48|4.41|-|1|None,CXCL14|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.255848	1084.49714	-1.5047	-0.00081746	-1.456	-0.00079096	-2.9607	-0.0016084	543.254488856186	44.707	0.64983	44.496	44.221	44.871	-0.21109	0.035921	0.0010226	NaN	44.377	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039200			53198	398	37117	37178							-0.041725658192717674
NEKSEKVCQ	9	Unmodified	_NEKSEKVCQ_					0	0	0		nc|ENSG00000173389|Q8N6M8-2|IQCF1	nc|ENSG00000173389|Q8N6M8-2|IQCF1	nc|ENSG00000173389|Q8N6M8-2|IQCF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7958984375	2	532.755681	1063.49681	-1.3565	-0.00072271	1.1442	0.00060956	-0.21238	-0.00011315	532.7562026784432	35.097	0.71862	35.075	34.79	35.509	-0.021767					43	18	4	0	0	0	0.024344	1	2722	2722		37.812	6.2817	1	803160			53199	18524	37118	37179	58464	58464					-0.032399855391076926
NEKSKGAIET	10	Unmodified	_NEKSKGAIET_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2963256835938	2	538.782753	1075.55095	-0.98432	-0.00053033	-2.4428	-0.0013162	-3.4271	-0.0018465	538.7815216517721	58.067	0.28016	58.158	57.908	58.188	0.091217					10	7	2	0	0	0	0.03519	1	6446	6446		19.104	4.2386	1	432720	+		53200	24805	37119	37180	58465	58465					0.01619929884100202
NEKTMNLNP	9	Unmodified	_NEKTMNLNP_					0	0	0		PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B;PRPF38B|p.G324Qfs*6|1|0.35|ENSG00000134186|chr1:108699348-108699358|GGGGTTAGAAC/-|frameshift_variant;ENST00000467302.5_1_1:109235213-109236214:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B;PRPF38B|p.M61Nfs*31|1|0.27|ENSG00000134186|chr1:108692773-108692774|TG/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8074340820312	2	530.758223	1059.50189	-0.5327	-0.00028274	-4.2	-0.0022292	-4.7327	-0.0025119	530.7564042695469	49.37	0.6621	49.217	48.97	49.632	-0.15277					40	17	4	0	0	0	0.024477	1	5105	5105		35.618	3.6634	1	432960			53201	4762	37120	37181	58466	58466					-0.02547681676492175
NEKTMNLNP	9	Unmodified	_NEKTMNLNP_					0	0	0		PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B;PRPF38B|p.G324Qfs*6|1|0.35|ENSG00000134186|chr1:108699348-108699358|GGGGTTAGAAC/-|frameshift_variant;ENST00000467302.5_1_1:109235213-109236214:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B;PRPF38B|p.M61Nfs*31|1|0.27|ENSG00000134186|chr1:108692773-108692774|TG/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.758223	1059.50189	-0.33627	-0.00017848	-4.2902	-0.0022771	-4.6265	-0.0024556	530.7561301556769	49.118	0.46329	49.118	48.899	49.362	0	-0.030115	-0.00067808	NaN	35.618	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494530			53202	4762	37120	37181							-0.02547681676492175
NEKTMNLNP	9	Unmodified	_NEKTMNLNP_					0	0	0		PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B;PRPF38B|p.G324Qfs*6|1|0.35|ENSG00000134186|chr1:108699348-108699358|GGGGTTAGAAC/-|frameshift_variant;ENST00000467302.5_1_1:109235213-109236214:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B;PRPF38B|p.M61Nfs*31|1|0.27|ENSG00000134186|chr1:108692773-108692774|TG/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.758223	1059.50189	-1.3614	-0.00072257	-2.8139	-0.0014935	-4.1752	-0.002216	530.7566254517545	49.035	0.43844	49.109	48.877	49.316	0.074196	-0.038859	0.00088912	NaN	35.618	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419080			53203	4762	37120	37181							-0.02547681676492175
NEKTQLIQQVE	11	Unmodified	_NEKTQLIQQVE_					0	0	0		ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	ENSG00000204103|ENST00000373313|MAFB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.266845703125	3	443.905141	1328.69359	0.25703	0.0001141	0.63034	0.00027981	0.88737	0.00039391	443.9054040519572	25.866	0.79176	25.946	25.706	26.498	0.080088					36	18	4	0	0	0	0.024738	1	1262	1262		31.068	0	1	211860			53204	10299	37121	37182	58467	58467					0.042395175554929665
NEKTRKIT	8	Unmodified	_NEKTRKIT_					0	0	0		ENST00000442578.5_2_7:65894980-65944034:-|nuORF	ENST00000442578.5_2_7:65894980-65944034:-|nuORF	ENST00000442578.5_2_7:65894980-65944034:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7659912109375	2	495.290548	988.566543	-0.10618	-5.259E-05	3.2837	0.0016264	3.1775	0.0015738	495.29189539357486	42.41	0.33836	42.277	42.082	42.42	-0.1322					13	9	2	0	0	0	0.027866	1	3867	3867		57.811	15.337	1	97517			53205	14384	37122	37183	58468	58468					0.07180261191797399
NEKTVVYM	8	Unmodified	_NEKTVVYM_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.21087646484375	2	492.24696	982.479368	-0.78679	-0.00038729	-2.7757	-0.0013663	-3.5625	-0.0017536	492.24541536352405	49.252	0.61136	49.152	48.88	49.491	-0.1008					33	15	3	0	0	0	0.027866	1	4978	4978		45.952	20.502	1	453370	+		53206	22076	37123	37184	58469	58469					-0.012572810741289686
NEKVNTPRN	9	Unmodified	_NEKVNTPRN_					0	0	0			REV__ENSG00000149657|ENST00000279068|LSM14B	REV__ENSG00000149657|ENST00000279068|LSM14B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2772827148438	2	536.280712	1070.54687	-1.5676	-0.00084068	2.3754	0.0012739	0.80781	0.00043321	536.284057403821	44.252	0.23645	44.107	43.958	44.194	-0.14471					9	6	2	0	0	0	0.024288	1	4190	4190		71.877	13.096	1	91910	+		53207	24695	37124	37185	58470	58470					0.014418851810432898
NEKWCIEQTT	10	Unmodified	_NEKWCIEQTT_					0	0	0			REV__ENST00000536257.5_1_1:159770332-159778007:+|nuORF	REV__ENST00000536257.5_1_1:159770332-159778007:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.89471435546875	3	417.860656	1250.56014	-0.76384	-0.00031918	4.2948	0.0017946	3.531	0.0014755	417.86212893384396	30.259	0.33727	30.081	29.866	30.203	-0.17818					12	7	2	0	0	0	0.03519	1	1888	1888		34.087	12.306	1	72629	+		53208	30353	37125	37186	58471	58471					-0.05512044821921336
NEKWSEAT	8	Unmodified	_NEKWSEAT_					0	0	0			REV__ENST00000489852.1_1_7:96747035-96772137:+|nuORF	REV__ENST00000489852.1_1_7:96747035-96772137:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.7685241699219	2	482.722164	963.429775	-0.9169	-0.00044261	0.45694	0.00022058	-0.45996	-0.00022203	482.7222257010543	44.503	0.55286	44.259	44.045	44.598	-0.2444					22	14	2	0	0	0	0.027866	1	4169	4169		23.042	6.5693	1	281870	+		53209	33685	37126	37187	58472	58472					-0.05340272758576248
NEKWVASI	8	Unmodified	_NEKWVASI_					0	0	0			REV__nc|ENSG00000085224|P46100-2|ATRX	REV__nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.27166748046875	2	473.753267	945.491981	0.88409	0.00041884	0.88177	0.00041774	1.7659	0.00083659	473.7526766905465	40.913	0.88612	40.913	40.692	41.579	0					33	24	2	0	0	0	0.027866	1	3677	3677		47.657	10.498	1	253510	+		53210	19189	37127	37188	58473	58473					0.01705498380431436
NEKYFSDL	8	Unmodified	_NEKYFSDL_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7646179199219	2	508.24019	1014.46583	-0.12966	-6.5899E-05	3.6536	0.0018569	3.524	0.001791	508.2419077834248	39.333	0.51456	39.333	39.112	39.627	0					35	14	3	0	0	0	0.027866	1	3347	3347		24.203	0	1	886380			53211	4400	37128	37189	58474	58474					-0.0408281558170529
NEKYFSDL	8	Unmodified	_NEKYFSDL_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.24019	1014.46583	-0.89869	-0.00045675	4.4762	0.002275	3.5775	0.0018182	508.24237764913283	39.57	0.52702	39.594	39.313	39.84	0.023727	0.37111	0.00054934	NaN	31.955	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779560			53212	4400	37128	37189							-0.0408281558170529
NEKYFSDL	8	Unmodified	_NEKYFSDL_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.24019	1014.46583	-0.79569	-0.0004044	3.5179	0.0017879	2.7222	0.0013835	508.2419754557168	39.179	0.36126	39.015	38.829	39.19	-0.16459	-0.20816	-0.00042477	NaN	31.955	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255290			53213	4400	37128	37189							-0.0408281558170529
NEKYFSDL	8	Unmodified	_NEKYFSDL_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.24019	1014.46583	-0.69315	-0.00035229	3.9113	0.0019879	3.2181	0.0016356	508.2418496311663	39.259	0.47961	39.036	38.823	39.302	-0.22311	-0.18725	-2.4927E-05	NaN	31.955	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188340			53214	4400	37128	37189							-0.0408281558170529
NEKYFSDL	8	Unmodified	_NEKYFSDL_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.24019	1014.46583	-0.18575	-9.4407E-05	2.716	0.0013804	2.5302	0.001286	508.24156328005387	39.277	0.3676	39.052	38.874	39.242	-0.2257	-0.17145	-0.0012399	NaN	31.955	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182920			53215	4400	37128	37189							-0.0408281558170529
NELAKFCLT	9	Unmodified	_NELAKFCLT_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7929077148438	2	519.76806	1037.52157	-0.36692	-0.00019072	-3.5927	-0.0018674	-3.9597	-0.0020581	519.7668605922006	64.043	0.3596	63.815	63.549	63.908	-0.22773					10	8	2	0	0	0	0.024495	1	7271	7271		26.693	0	1	62451	+		53216	19887	37129	37190	58475	58475					0.004306943342498926
NELAKFCLT	9	Unmodified	_NELAKFCLT_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.76806	1037.52157	0.73542	0.00038225	-3.7711	-0.0019601	-3.0357	-0.0015778	519.765769787429	63.68	0.43382	63.68	63.447	63.88	0	-0.095206	-0.00027164	NaN	29.17	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280220	+		53217	19887	37129	37190							0.004306943342498926
NELDMYQQSL	10	Unmodified	_NELDMYQQSL_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2403869628906	3	414.188661	1239.54415	-0.056543	-2.3419E-05	3.9825	0.0016495	3.9259	0.0016261	414.19005946446896	34.486	0.6573	34.262	33.923	34.58	-0.22412					22	16	2	0	0	0	0.03519	1	2491	2491		6.3209	0	1	346250	+		53218	23390	37130	37191	58476	58476					-0.06603751058787566
NELDRCQAM	9	Unmodified	_NELDRCQAM_					0	0	0			REV__nc|ENSG00000171962|Q9H069-2|DRC3	REV__nc|ENSG00000171962|Q9H069-2|DRC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2338256835938	2	540.234058	1078.45356	-0.69106	-0.00037333	0.10853	5.8634E-05	-0.58253	-0.0003147	540.2341320885131	26.724	1.482	26.724	26.283	27.765	0					110	37	4	0	0	0	0.59099	1	1365	1365		53.351	2.016	1	5851700	+		53219	26621	37131	37192	58477	58477					-0.08252498588058188
NELDRCQAM	9	Unmodified	_NELDRCQAM_					0	0	0			REV__nc|ENSG00000171962|Q9H069-2|DRC3	REV__nc|ENSG00000171962|Q9H069-2|DRC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2338256835938	2	540.234058	1078.45356	-1.0465	-0.00056534	0.36712	0.00019833	-0.67935	-0.00036701	540.2342793222425	26.308	1.3828	26.389	26.01	27.392	0.081293					113	34	5	0	0	0	0.59099	1	1282	1282		53.351	2.016	1	5038300	+		53220	26621	37131	37192	58478	58478					-0.08252498588058188
NELEEFKGH	9	Unmodified	_NELEEFKGH_					0	0	0			REV__nc|ENSG00000198160|Q8N108-17|MIER1	REV__nc|ENSG00000198160|Q8N108-17|MIER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2803955078125	2	551.76182	1101.50909	-1.4932	-0.00082391	4.2771	0.00236	2.7839	0.001536	551.763999044454	35.786	0.80288	35.743	35.405	36.208	-0.042454					55	21	4	0	0	0	0.024374	1	2812	2812		32.812	0	1	969610	+		53221	28391	37132	37193	58479	58479					-0.0376062580442067
NELEEFKGH	9	Unmodified	_NELEEFKGH_					0	0	0			REV__nc|ENSG00000198160|Q8N108-17|MIER1	REV__nc|ENSG00000198160|Q8N108-17|MIER1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.76182	1101.50909	-1.1033	-0.00060874	3.8943	0.0021487	2.7911	0.00154	551.7637824207108	35.949	0.90439	35.949	35.57	36.474	0	0.088095	0.00013276	NaN	25.574	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920430	+		53222	28391	37132	37193							-0.0376062580442067
NELEEFKGH	9	Unmodified	_NELEEFKGH_					0	0	0			REV__nc|ENSG00000198160|Q8N108-17|MIER1	REV__nc|ENSG00000198160|Q8N108-17|MIER1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.76182	1101.50909	-0.73245	-0.00040414	3.4109	0.001882	2.6785	0.0014779	551.7636038927545	35.846	0.88338	35.89	35.497	36.38	0.044056	0.029288	-0.00040067	NaN	25.574	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757640	+		53223	28391	37132	37193							-0.0376062580442067
NELELIILI	9	Unmodified	_NELELIILI_					0	0	0		OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant;ENSG00000150261|ENST00000279783|OR8K1	OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	OR8K1|p.P289Lfs*3|1|0.22|ENSG00000150261|chr11:56346903-56346903|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.5584106445312	2	535.328808	1068.64306	-1.5082	-0.0008074	-1.1988	-0.00064176	-2.707	-0.0014492	535.3281031923578	35.604	0.53733	35.582	35.347	35.884	-0.021763					40	13	4	0	0	0	0.024344	1	2704	2704		37.812	0	1	1178600			53224	6131	37133	37194	58480	58480					0.1114863996845088
NELERPCETL	10	Unmodified	_NELERPCETL_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.21234130859375	3	401.860656	1202.56014	1.2911	0.00051885	-0.67108	-0.00026968	0.62004	0.00024917	402.1949970721373	36.725	0.48391	36.516	36.201	36.685	-0.2092					15	11	2	0	0	0	0.03519	1	2862	2862		18.531	0	1	147670	+		53225	27144	37134	37195	58481	58481					-0.0330404482187987
NELFKTPI	8	Unmodified	_NELFKTPI_					0	0	0			REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.269287109375	2	481.271293	960.528032	0.022242	1.0704E-05	-4.453	-0.0021431	-4.4308	-0.0021324	481.269092759322	31.016	0.65145	30.775	30.497	31.149	-0.24109					47	15	4	0	0	0	0.5947	2	2017	2017;2028		76.774	2.5191	1	4017500	+		53226	37042	37135	37196	58482;58483	58482					0.046189555572937024
NELFKTPI	8	Unmodified	_NELFKTPI_					0	0	0			REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.2693786621094	2	481.271293	960.528032	-0.58904	-0.00028349	-3.8179	-0.0018374	-4.4069	-0.0021209	481.269395030592	30.936	0.9689	30.758	30.283	31.252	-0.17818					55	23	4	0	0	0	0.6536	1	2002	2002		71.296	2.811	1	3657800	+		53227	37042	37135	37196	58484	58484					0.046189555572937024
NELGKTVPM	9	Unmodified	_NELGKTVPM_					0	0	0		nc|ENSG00000187821|A6NFD8-4|HELT;ENSG00000187821|ENST00000515777|HELT	nc|ENSG00000187821|A6NFD8-4|HELT	nc|ENSG00000187821|A6NFD8-4|HELT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3152160644531	2	494.760235	987.505917	-0.83848	-0.00041484	2.4789	0.0012265	1.6405	0.00081164	494.7608426875254	80.608	1.0623	80.63	80.021	81.083	0.021439					42	25	2	0	0	0	0.024354	1	9972	9972		30.504	0	1	195720			53228	9663	37136	37197	58485	58485					0.01166407817208892
NELHADLET	9	Unmodified	_NELHADLET_					0	0	0			REV__ENSG00000097033|ENST00000370558|SH3GLB1	REV__ENSG00000097033|ENST00000370558|SH3GLB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.29248046875	2	521.246003	1040.47745	-0.30456	-0.00015875	-2.3202	-0.0012094	-2.6247	-0.0013681	521.744344750908	73.141	0.31065	73.151	72.944	73.255	0.0096512					11	7	2	0	0	0	0.024466	1	8819	8819		24.519	8.046	1	95660	+		53229	20992	37137	37198	58486	58486					-0.04116618558373375
NELHLHEL	8	Unmodified	_NELHLHEL_					0	0	0			REV__ENSG00000106823|ENST00000344604|ECM2	REV__ENSG00000106823|ENST00000344604|ECM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2880554199219	2	502.761623	1003.50869	-0.18471	-9.2863E-05	1.0586	0.00053221	0.87387	0.00043935	502.7620123101592	43.947	0.35785	43.983	43.818	44.176	0.036903					13	9	2	0	0	0	0.027866	1	4111	4111		24.519	9.6543	1	590160	+		53230	21647	37138	37199	58487	58487					0.007079992663648227
NELIKVVSP	9	Unmodified	_NELIKVVSP_					0	0	0		ENSG00000125447|ENST00000537686|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1	ENSG00000125447|ENST00000537686|GGA3	ENSG00000125447|ENST00000537686|GGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7899169921875	2	499.797675	997.580796	-0.1686	-8.4266E-05	-0.88189	-0.00044077	-1.0505	-0.00052503	499.79723333558104	92.481	0.69771	92.359	92.142	92.84	-0.12241					35	16	4	0	0	0	0.024397	1	11418	11418		39.253	0	1	117540			53231	4105	37139	37200	58488	58488					0.08190913620092033
NELILALFS	9	Unmodified	_NELILALFS_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB;NFRKB|p.S351Lfs*34|1|0.16|ENSG00000170322|chr11:129882483-129882483|G/-|frameshift_variant	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.3099060058594	2	510.292225	1018.5699	-0.095829	-4.8901E-05	3.0923	0.001578	2.9965	0.0015291	510.29249690933784	77.379	0.42216	77.168	76.954	77.376	-0.21087					20	9	3	0	0	0	0.02435	1	9495	9495		51.335	0	1	547240			53232	8023	37140	37201	58489	58489					0.06135511245804537
NELKAAEAL	9	Unmodified	_NELKAAEAL_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2772521972656	2	479.763832	957.513111	-0.18729	-8.9856E-05	1.7386	0.0008341	1.5513	0.00074424	479.7641338607317	21.534	0.29234	21.444	21.207	21.499	-0.090092					7	5	2	0	0	0	0.021513	1	646	646		82.241	15.811	1	13278			53233	2343	37141	37202	58490	58490					0.032654636892857525
NELKALVQ	8	Unmodified	_NELKALVQ_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.7803649902344	2	457.768917	913.523281	0.14676	6.718E-05	-0.36411	-0.00016668	-0.21735	-9.9498E-05	457.7686813306594	49.364	0.72106	49.182	48.773	49.494	-0.18206					40	18	3	0	0	0	0.027866	1	4933	4933		26.693	0	1	968680	+		53234	23780	37142	37203	58491	58491					0.06306071414519465
NELKNKLN	8	Unmodified	_NELKNKLN_					0	0	0			REV__ENSG00000144746|ENST00000273258|ARL6IP5	REV__ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.78729248046875	2	486.777274	971.539994	-0.62304	-0.00030328	1.0778	0.00052467	0.4548	0.00022139	486.777823021333	45.21	1.0657	45.253	44.756	45.822	0.043877					88	30	4	0	0	0	0.027866	1	4280	4280		25.574	0	1	1778400	+		53235	24358	37143	37204	58492	58492					0.05308572300475589
NELKWVQT	8	Unmodified	_NELKWVQT_					0	0	0			REV__nc|ENSG00000131686|P23280-3|CA6	REV__nc|ENSG00000131686|P23280-3|CA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.8030090332031	2	509.271824	1016.5291	1.0739	0.00054693	-1.641	-0.00083573	-0.56708	-0.0002888	509.2709697701023	37.19	0.60411	37.19	36.846	37.45	0					25	15	2	0	0	0	0.027866	1	2993	2993		21.96	0	1	282370	+		53236	23226	37144	37205	58493	58493					0.021491699262014663
NELLKHLL	8	Unmodified	_NELLKHLL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.27142333984375	2	490.300384	978.586216	1.3277	0.00065097	-1.3628	-0.00066818	-0.035103	-1.7211E-05	490.2995964392728	63.542	0.71585	63.596	63.267	63.983	0.054104					33	19	2	0	0	0	0.027866	1	7311	7311		33.516	1.5607	1	384580			53237	1189	37145	37206	58494	58494					0.09606637202557522
NELLKLVAH	9	Unmodified	_NELLKLVAH_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7927856445312	2	518.811116	1035.60768	-0.25056	-0.00012999	1.425	0.00073933	1.1745	0.00060933	518.8117812101284	64.223	0.29214	63.971	63.838	64.13	-0.25141					18	7	3	0	0	0	0.024381	1	7531	7531		45.952	11.779	1	290820	+		53238	26845	37146	37207	58495	58495					0.09130022231261137
NELLNPEDD	9	Unmodified	_NELLNPEDD_					0	0	0		ENST00000555527.1_1_14:67579771-67631908:+|nuORF;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3154296875	2	529.735468	1057.45638	-0.85303	-0.00045188	1.637	0.00086719	0.78399	0.00041531	529.7361031214714	67.191	0.90896	67.191	66.883	67.792	0					45	22	4	0	0	0	0.024477	1	7969	7969		9.7057	0	1	837970			53239	8187	37147	37208	58496	58496					-0.07004628657887224
NELLQRWTPR	10	Unmodified	_NELLQRWTPR_					0	0	0		nc|ENSG00000161013|Q9UQ53-3|MGAT4B	nc|ENSG00000161013|Q9UQ53-3|MGAT4B	nc|ENSG00000161013|Q9UQ53-3|MGAT4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.241943359375	3	438.242199	1311.70477	0.21158	9.2725E-05	-0.49891	-0.00021864	-0.28733	-0.00012592	438.24187789018686	53.589	0.77763	53.392	53.049	53.827	-0.19739					67	22	4	0	0	0	1.1123	1	5616	5616		31.068	3.4242	1	3949800			53240	18430	37148	37209	58497	58497					0.0613838444025987
NELLRVKY	8	Unmodified	_NELLRVKY_					0	0	0			REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7836303710938	2	517.803291	1033.59203	-0.64328	-0.00033309	-1.3851	-0.00071722	-2.0284	-0.0010503	517.8021757884276	34.239	0.38657	34.239	34.129	34.515	0					14	9	2	0	0	0	0.027866	1	2535	2535		19.36	0	1	231900	+		53241	28649	37149	37210	58498	58498					0.07657735714224145
NELLRVKY	8	Unmodified	_NELLRVKY_					0	0	0			REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7930908203125	2	517.803291	1033.59203	0.12354	6.3969E-05	-3.7553	-0.0019445	-3.6318	-0.0018805	517.8014484961925	64.14	0.47742	63.948	63.677	64.154	-0.19243					15	11	2	0	0	0	0.027866	1	7288	7288		44.117	0	1	139060	+		53242	28649	37149	37210	58499	58499					0.07657735714224145
NELLRVKY	8	Unmodified	_NELLRVKY_					0	0	0			REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	REV__nc|ENSG00000204967|Q9UN74-2|PCDHA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7928466796875	2	517.803291	1033.59203	-0.099824	-5.1689E-05	-3.2169	-0.0016657	-3.3167	-0.0017174	517.801949250399	64.174	0.39875	63.916	63.713	64.112	-0.25824					14	9	2	0	0	0	0.027866	1	7300	7300		37.159	0	1	127090	+		53243	28649	37149	37210	58500	58500					0.07657735714224145
NELLTDWSV	9	Unmodified	_NELLTDWSV_					0	0	0			REV__ENST00000513391.2_2_4:48850439-48852008:+|nuORF	REV__ENST00000513391.2_2_4:48850439-48852008:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2467651367188	2	538.766571	1075.51859	-0.1971	-0.00010619	1.551	0.00083562	1.3539	0.00072944	538.769123379407	56.281	0.34861	56.065	55.808	56.157	-0.21607					10	8	2	0	0	0	0.024374	1	6054	6054		32.812	0	1	55445	+		53244	34154	37150	37211	58501	58501					-0.016148575188935865
NELMLLANTGA	11	Unmodified	_NELMLLANTGA_					0	0	0			REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.7744140625	2	573.794806	1145.57506	-0.70649	-0.00040538	0.619	0.00035518	-0.087492	-5.0203E-05	573.7953444444386	34.495	0.72091	34.319	34.011	34.732	-0.17557					30	17	2	0	0	0	0.024731	1	2520	2520		37.508	11.445	1	75238	+		53245	22413	37151	37212	58502	58502					0.008094470461173842
NELMLLANTGA	11	Unmodified	_NELMLLANTGA_					0	0	0			REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	573.794806	1145.57506	-0.044114	-2.5313E-05	0.80418	0.00046144	0.76007	0.00043612	573.7953975597624	34.348	0.53924	34.343	34.071	34.61	-0.0045624	-0.024937	-0.0010977	NaN	30.569	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124250	+		53246	22413	37151	37212							0.008094470461173842
NELMLLANTGA	11	Unmodified	_NELMLLANTGA_					0	0	0			REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	REV__nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	573.794806	1145.57506	-1.3408	-0.00076936	2.4719	0.0014184	1.1311	0.00064902	573.7961063411977	34.408	0.67616	34.458	34.005	34.682	0.050255	0.089807	0.00081615	NaN	30.569	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143720	+		53247	22413	37151	37212							0.008094470461173842
NELPLYRF	8	Unmodified	_NELPLYRF_					0	0	0			REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	REV__ENST00000484594.5_1_2:212426591-213403254:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2822875976562	2	526.282192	1050.54983	-0.30285	-0.00015939	-0.076648	-4.0338E-05	-0.3795	-0.00019972	526.281956830531	16.752	0.21449	16.544	16.447	16.662	-0.20777					7	4	2	0	0	0	1.0239	1	96	96		33.516	0	1	36814	+		53248	27192	37152	37213	58503	58503					0.026577603058285604
NELPSLALL	9	Unmodified	_NELPSLALL_					0	0	0			REV__ENSG00000104044|ENST00000354638|OCA2	REV__ENSG00000104044|ENST00000354638|OCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2891845703125	2	485.2844	968.554247	-0.39062	-0.00018956	-0.055249	-2.6811E-05	-0.44587	-0.00021637	485.2851344632931	34.868	0.91293	34.661	34.366	35.279	-0.20695					48	22	3	0	0	0	0.022832	1	2574	2574		82.241	5.4664	1	432300	+		53249	21412	37153	37214	58504	58504					0.06871224728752168
NELPTTPVK	9	Unmodified	_NELPTTPVK_					0	0	0		nc|ENSG00000177030|O75398-4|DEAF1;nc|ENSG00000177030|O75398-3|DEAF1;ENSG00000177030|ENST00000382409|DEAF1	nc|ENSG00000177030|O75398-4|DEAF1	nc|ENSG00000177030|O75398-4|DEAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3009033203125	2	499.779482	997.544411	-0.64303	-0.00032137	1.9887	0.00099392	1.3457	0.00067254	499.78017499512595	32.711	0.89037	32.723	32.338	33.228	0.011787					69	23	4	0	0	0	0.024261	1	2258	2258		54.776	0	1	3756100			53250	8698	37154	37215	58505	58505					0.04554036723379795
NELQIEQEN	9	Unmodified	_NELQIEQEN_					0	0	0		ENSG00000123094|ENST00000689635|RASSF8;nc|ENSG00000123094|Q8NHQ8-2|RASSF8	ENSG00000123094|ENST00000689635|RASSF8	ENSG00000123094|ENST00000689635|RASSF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2860107421875	2	558.762017	1115.50948	-0.69798	-0.00039001	4.1365	0.0023113	3.4385	0.0019213	558.764180395302	40.043	0.11814	39.813	39.733	39.851	-0.23021					4	2	2	0	0	0	0.024427	1	3413	3413		42.396	5.237	1	20260			53251	3955	37155	37216	58506	58506					-0.04365250875230231
NELQKGRY	8	Unmodified	_NELQKGRY_					0	0	0			REV__ENSG00000147854|ENST00000276893|UHRF2	REV__ENSG00000147854|ENST00000276893|UHRF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.29779052734375	2	504.267073	1006.51959	0.36044	0.00018176	0.82396	0.0004155	1.1844	0.00059725	504.2684120610072	37.082	0.30481	36.889	36.697	37.002	-0.193					11	7	2	0	0	0	0.027866	1	2935	2935		25.45	0	1	75608	+		53252	24584	37156	37217	58507	58507					0.01659401640665692
NELQKIIIL	9	Unmodified	_NELQKIIIL_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3187255859375	2	542.342249	1082.66995	-0.86443	-0.00046882	-0.15334	-8.3163E-05	-1.0178	-0.00055198	542.341787786736	60.021	0.59309	59.821	59.577	60.17	-0.20016					20	15	2	0	0	0	0.024541	1	6820	6820		23.523	1.8369	1	174320			53253	8503	37157	37218	58508	58508					0.13191748579629348
NELRDRLWKKK	11	Unmodified	_NELRDRLWKKK_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2;ENST00000481128.1_1_1:223989797-223991008:-|nuORF	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.95904541015625	3	495.959803	1484.85758	0.046057	2.2843E-05	-1.4923	-0.00074011	-1.4462	-0.00071727	495.9587070757246	102.16	1.6578	102.16	101.55	103.21	0					119	38	5	0	0	0	1.0723	1	13148	13148		18.966	2.4365	1	937260			53254	5658	37158	37219	58509	58509					0.1345457983684355
NELRIVVE	8	Unmodified	_NELRIVVE_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3088073730469	2	486.279649	970.544745	0.12892	6.2693E-05	-0.48165	-0.00023422	-0.35273	-0.00017152	486.2792505913768	20.892	0.53183	20.722	20.442	20.974	-0.1702					21	10	3	0	0	0	0.027866	1	574	574		60.972	5.4677	1	78042			53255	2964	37159	37220	58510	58510					0.058294564432458174
NELRLNSLE	9	Unmodified	_NELRLNSLE_					0	0	0			REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2822875976562	2	544.290745	1086.56694	0.60211	0.00032772	-0.89857	-0.00048908	-0.29646	-0.00016136	544.2907399083605	51.205	0.79418	51.094	50.823	51.617	-0.11163					33	20	2	0	0	0	0.024313	1	5267	5267		60.118	17.254	1	4718900	+		53256	20337	37160	37221	58511	58511					0.027116361209891693
NELSLPQV	8	Unmodified	_NELSLPQV_					0	0	0			REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	REV__nc|ENSG00000108961|Q9HD47-4|RANGRF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2634582519531	2	450.245275	898.475997	-0.30765	-0.00013852	1.2814	0.00057693	0.97371	0.00043841	450.24589568014545	60.933	0.32932	61.005	60.91	61.239	0.071125					13	8	2	0	0	0	0.027866	1	6968	6968		58.782	3.2778	1	116690	+		53257	21772	37161	37222	58512	58512					0.02269792143522409
NELSVNQLL	9	Unmodified	_NELSVNQLL_					0	0	0			REV__ENSG00000156218|ENST00000286744|ADAMTSL3	REV__ENSG00000156218|ENST00000286744|ADAMTSL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2843017578125	2	515.282389	1028.55022	1.4488	0.00074656	2.2616	0.0011654	3.7104	0.0019119	515.2833921295944	82.553	1.3957	82.443	81.842	83.238	-0.11006					60	32	3	0	0	0	0.32811	1	10270	10270		71.877	0	1	1565800	+		53258	25059	37162	37223	58513	58513					0.03709135235044414
NELSVYLVYPN	11	Unmodified	_NELSVYLVYPN_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|181|1|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|181|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.88134765625	3	437.559082	1309.65542	-0.38628	-0.00016902	1.4845	0.00064957	1.0982	0.00048055	437.55967738641255	39.737	0.28064	39.514	39.302	39.583	-0.22311					9	6	2	0	0	0	0.024587	1	3357	3357		50.791	8.5487	1	143150	+		53259	36286	37163	37224	58514	58514					0.012976316408185085
NELSYGEFY	9	Unmodified	_NELSYGEFY_					0	0	0			REV__ENSG00000157093|ENST00000287748|LYZL4	REV__ENSG00000157093|ENST00000287748|LYZL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.2431030273438	2	561.242929	1120.47131	-0.082918	-4.6537E-05	0.1365	7.661E-05	0.053583	3.0073E-05	561.2428925461766	76.12	1.0928	75.861	75.557	76.65	-0.25865					58	26	4	0	0	0	0.4752	1	9043	9043		60.972	2.19	1	1266700	+		53260	25110	37164	37225	58515	58515					-0.08411136789891316
NELSYGEFY	9	Unmodified	_NELSYGEFY_					0	0	0			REV__ENSG00000157093|ENST00000287748|LYZL4	REV__ENSG00000157093|ENST00000287748|LYZL4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	561.242929	1120.47131	-0.082918	-4.6537E-05	0.1365	7.661E-05	0.053583	3.0073E-05	561.2428925461766	76.12	1.0928	75.861	75.557	76.65	-0.25865	0.028294	-0.00018813	NaN	60.972	58	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266700	+		53261	25110	37164	37225							-0.08411136789891316
NELSYGEFY	9	Unmodified	_NELSYGEFY_					0	0	0			REV__ENSG00000157093|ENST00000287748|LYZL4	REV__ENSG00000157093|ENST00000287748|LYZL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	561.242929	1120.47131	-0.11612	-6.5173E-05	0.23188	0.00013014	0.11575	6.4966E-05	561.242937917664	75.936	1.1377	75.761	75.507	76.645	-0.17548	-0.072083	-8.1073E-05	NaN	60.972	58	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1436600	+		53262	25110	37164	37225							-0.08411136789891316
NELVCTAMLVD	11	Unmodified	_NELVCTAMLVD_					0	0	0			REV__nc|ENSG00000185504|Q0VG06-3|FAAP100	REV__nc|ENSG00000185504|Q0VG06-3|FAAP100	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	403.2070617675781	3	403.194758	1206.56245	-0.29188	-0.00011769	-1.4979	-0.00060395	-1.7898	-0.00072163	403.1940164783304	35.017	0.22304	34.995	34.79	35.013	-0.021763					9	5	2	0	0	0	0.024795	1	2630	2630		37.6	0.091722	1	158990	+		53263	27768	37165	37226	58516	58516					-0.03257332408429647
NELVEDPSKGK	11	Unmodified	_NELVEDPSKGK_					0	0	0			REV__ENSG00000179636|ENST00000321760|TPPP2	REV__ENSG00000179636|ENST00000321760|TPPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2351989746094	3	405.878704	1214.61428	0.11957	4.8532E-05	2.4842	0.0010083	2.6037	0.0010568	406.2150762252383	29.35	0.25545	29.178	29.07	29.325	-0.17258					7	5	2	0	0	0	0.02476	1	1769	1769		32.034	4.9868	1	22003	+		53264	27286	37166	37227	58517	58517					0.015558706013280243
NELVEDPSKGK	11	Unmodified	_NELVEDPSKGK_					0	0	0			REV__ENSG00000179636|ENST00000321760|TPPP2	REV__ENSG00000179636|ENST00000321760|TPPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2352294921875	3	405.878704	1214.61428	-0.38981	-0.00015822	3.2955	0.0013376	2.9057	0.0011794	405.8799115099196	29.356	0.2961	29.207	29	29.296	-0.14952					8	6	2	0	0	0	0.02478	1	1752	1752		45.908	32.4	1	27871	+		53265	27286	37166	37227	58518	58518					0.015558706013280243
NELVNKPYLP	10	Unmodified	_NELVNKPYLP_					0	0	0			REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF	REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.801513671875	2	593.826963	1185.63937	-1.2405	-0.00073665	-4.1383	-0.0024574	-5.3788	-0.0031941	593.8254300455302	36.039	0.34138	35.834	35.544	35.886	-0.20518					14	9	2	0	0	0	0.03519	1	2782	2782		51.193	0	1	815980	+		53266	25232	37167	37228	58519	58519					0.05397970194553636
NELVQRFL	8	Unmodified	_NELVQRFL_					0	0	0			REV__ENSG00000108666|ENST00000577809|C17orf75	REV__ENSG00000108666|ENST00000577809|C17orf75	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7875061035156	2	509.787641	1017.56073	-0.56843	-0.00028978	0.32623	0.00016631	-0.24221	-0.00012347	509.78757053104425	60.465	0.7189	60.252	59.924	60.643	-0.2134					46	18	4	0	0	0	0.6248	1	6906	6906		73.975	8.1716	1	5425000	+		53267	21755	37168	37229	58520	58520					0.052651626801548446
NELWEWHKT	9	Unmodified	_NELWEWHKT_					0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.25323486328125	3	414.86825	1241.58292	0.69958	0.00029023	-4.2536	-0.0017647	-3.554	-0.0014744	414.86677487254053	67.881	1.0347	67.625	67.153	68.188	-0.25516					44	24	2	0	0	0	0.024541	1	7845	7845		7.0187	0	1	331200	+		53268	28279	37169	37230	58521	58521					-0.02820657642109836
NENCNNNS	8	Unmodified	_NENCNNNS_					0	0	0		ENSG00000148600|ENST00000623527|CDHR1;ENST00000459673.1_1_10:85972822-85974374:+|nuORF	ENSG00000148600|ENST00000623527|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.30218505859375	2	454.66178	907.309008	-0.93739	-0.0004262	2.764	0.0012567	1.8266	0.00083049	454.6630241193205	60.805	1.1727	60.629	60.116	61.289	-0.1761					40	28	2	0	0	0	0.027866	1	6752	6752		5.9211	0	1	130700			53269	6041	37170	37231	58522	58522					-0.14835423743681986
NENLARRL	8	Unmodified	_NENLARRL_					0	0	0		ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.26324462890625	2	493.280515	984.546476	-0.044014	-2.1711E-05	2.4671	0.001217	2.4231	0.0011952	493.28136978887954	70.984	1.2063	70.994	70.636	71.842	0.010735					57	30	3	0	0	0	0.027866	1	8518	8518		85.359	5.9085	1	1657800			53270	1029	37171	37232	58523	58523					0.053585102518468375
NENLPEINI	9	Unmodified	_NENLPEINI_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.815185546875	2	528.272021	1054.52949	-1.0521	-0.0005558	0.18668	9.8617E-05	-0.86543	-0.00045718	528.2720461466282	43.612	0.75219	43.468	43.169	43.921	-0.14471					37	20	2	0	0	0	0.024389	1	4119	4119		42.864	10.052	1	1034400			53271	9617	37172	37233	58524	58524					0.004405448553598035
NENMPPFQV	9	Unmodified	_NENMPPFQV_					0	0	0			REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|2	REV__chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2437744140625	2	538.247492	1074.48043	-1.5867	-0.00085406	-4.4538	-0.0023972	-6.0405	-0.0032513	538.2457913956628	55.469	1.4948	55.567	55.257	56.752	0.098011					95	40	5	0	0	0	0.32811	1	6038	6038		71.877	5.4482	1	10652000	+		53272	19449	37173	37234	58525	58525					-0.05383066705235251
NENRALLP	8	Unmodified	_NENRALLP_					0	0	0			REV__ENSG00000115155|ENST00000272371|OTOF	REV__ENSG00000115155|ENST00000272371|OTOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.73797607421875	2	463.756341	925.498129	-0.34846	-0.0001616	-1.2125	-0.00056231	-1.561	-0.00072391	463.75587761999964	32.071	0.47534	32.083	31.863	32.338	0.011799					15	11	2	0	0	0	0.027866	1	2182	2182		31.955	0	1	117730	+		53273	22169	37174	37235	58526	58526					0.03240016611948704
NENRTSLV	8	Unmodified	_NENRTSLV_					0	0	0			REV__ENSG00000046604|ENST00000261590|DSG2	REV__ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7684020996094	2	466.743431	931.472308	1.6681	0.00077855	2.8905	0.0013491	4.5586	0.0021277	466.74520836770677	74.215	0.38309	74.215	73.999	74.382	0					11	8	2	0	0	0	0.027866	1	9080	9080		23.042	0	1	64511	+		53274	20115	37175	37236	58527	58527					0.0038312236968067737
NENVKHKTKEY	11	Unmodified	_NENVKHKTKEY_					0	0	0		ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2804870605469	3	463.908886	1388.70483	0.14607	6.7765E-05	0.2674	0.00012405	0.41347	0.00019181	463.9088432963359	40.639	0.40443	40.662	40.46	40.864	0.023006					19	11	2	0	0	0	0.02483	1	3558	3558		15.337	0	1	167380			53275	9049	37176	37237	58528	58528					0.026023396496157147
NEPETFHSC	9	Unmodified	_NEPETFHSC_					0	0	0			REV__nc|ENSG00000005801|O14628-4|ZNF195	REV__nc|ENSG00000005801|O14628-4|ZNF195	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7864990234375	2	532.211106	1062.40766	-0.55161	-0.00029357	1.512	0.00080469	0.96036	0.00051112	532.2116940922126	45.642	0.52014	45.389	45.19	45.71	-0.25252					21	14	2	0	0	0	0.024374	1	4362	4362		49.442	0	1	265830	+		53276	19812	37177	37238	58529	58529					-0.12104820498620938
NEPFSAGR	8	Unmodified	_NEPFSAGR_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.2351379394531	2	439.211766	876.40898	0.45556	0.00020009	-0.1953	-8.5777E-05	0.26026	0.00011431	439.211383304424	25.48	0.71367	25.309	25.076	25.79	-0.17151					29	16	3	0	0	0	0.027866	1	1188	1188		30.318	11.214	1	106100			53277	8799	37178	37239	58530	58530					-0.03416818347568551
NEPFSAGR	8	Unmodified	_NEPFSAGR_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	439.211766	876.40898	-0.80809	-0.00035492	2.2889	0.0010053	1.4808	0.0006504	439.2125977227533	25.706	0.28782	25.479	25.271	25.559	-0.22683	0.12795	0.0018272	NaN	30.318	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57605			53278	8799	37178	37239							-0.03416818347568551
NEPGRTFKV	9	Unmodified	_NEPGRTFKV_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.8213500976562	2	524.282723	1046.55089	-0.054687	-2.8672E-05	-0.061093	-3.203E-05	-0.11578	-6.0701E-05	524.2826726118096	48.574	0.57605	48.392	48.091	48.667	-0.18206					26	15	2	0	0	0	0.021513	1	4799	4799		71.877	0	1	1646400	+		53279	26216	37179	37240	58531	58531					0.02947974674748366
NEPGSRSL	8	Unmodified	_NEPGSRSL_					0	0	0			REV__ENST00000497058.5_1_1:95699786-95705364:+|nuORF	REV__ENST00000497058.5_1_1:95699786-95705364:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.2299499511719	2	430.217049	858.419545	-0.04136	-1.7794E-05	2.6101	0.0011229	2.5688	0.0011051	430.2189236594982	42.723	0.21736	42.723	42.605	42.823	0					7	5	2	0	0	0	0.027866	1	3963	3963		73.975	0	1	64727	+		53280	33799	37180	37241	58532	58532					-0.01532835693137713
NEPIKVVK	8	Unmodified	_NEPIKVVK_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.787353515625	2	463.78711	925.559667	0.61242	0.00028403	-0.63001	-0.00029219	-0.01759	-8.1582E-06	463.786713180117	70.89	1.3658	70.901	70.55	71.916	0.010735					73	34	4	0	0	0	0.5947	1	8493	8493		76.774	2.7994	1	5401900	+		53281	27801	37181	37242	58533	58533					0.0939094831123839
NEPIKYQR	8	Unmodified	_NEPIKYQR_					0	0	0		ENSG00000137876|ENST00000260443|RSL24D1	ENSG00000137876|ENST00000260443|RSL24D1	ENSG00000137876|ENST00000260443|RSL24D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3030395507812	2	524.282723	1046.55089	-0.048871	-2.5622E-05	-1.8425	-0.00096597	-1.8913	-0.00099159	524.7807677196658	30.032	0.67538	29.882	29.626	30.301	-0.14952					19	14	2	0	0	0	0.027866	1	1854	1854		32.812	2.4947	1	90751			53282	5174	37182	37243	58534	58534					0.02947974674748366
NEPIQERF	8	Unmodified	_NEPIQERF_					0	0	0		ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2927856445312	2	516.759081	1031.50361	-0.41789	-0.00021595	1.0322	0.00053341	0.61434	0.00031747	516.7593151514978	31.791	0.31955	31.803	31.624	31.943	0.011797					14	7	2	0	0	0	0.027866	1	2144	2144		51.335	0	1	687440			53283	18259;18260;4331	37183	37244	58535	58535					-0.010883045962373217
NEPIRAAMV	9	Unmodified	_NEPIRAAMV_					0	0	0			REV__ENSG00000010319|ENST00000231721|SEMA3G	REV__ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7918395996094	2	500.765852	999.51715	-0.46412	-0.00023242	-2.4585	-0.0012311	-2.9226	-0.0014636	500.76457404341085	29.684	0.24892	29.534	29.377	29.626	-0.14952					8	5	2	0	0	0	0.024381	1	1799	1799		21.96	1.013	1	28032	+		53284	19904	37184	37245	58536	58536					0.017372299113503686
NEPLGMPLL	9	Unmodified	_NEPLGMPLL_					0	0	0			REV__nc|ENSG00000179115|Q9Y285-2|FARSA	REV__nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7816162109375	2	492.265153	982.515753	-0.48568	-0.00023908	3.9738	0.0019562	3.4882	0.0017171	492.26701665337305	32.894	0.60495	32.894	32.569	33.174	0					30	15	3	0	0	0	0.024263	1	2331	2331		51.335	5.3835	1	361100	+		53285	27239	37185	37246	58537	58537					0.02379595822594638
NEPLHVIPPL	10	Unmodified	_NEPLHVIPPL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8056030273438	2	564.824224	1127.63389	0.30715	0.00017349	1.7731	0.0010015	2.0802	0.001175	564.8251985895806	56.627	0.19365	56.425	56.288	56.482	-0.20209					6	4	2	0	0	0	0.03519	1	6131	6131		17.365	0	1	52369	+		53286	26900	37186	37247	58538	58538					0.07518291402766408
NEPLLPIEL	9	Unmodified	_NEPLLPIEL_					0	0	0			REV__ENSG00000072736|ENST00000346183|NFATC3	REV__ENSG00000072736|ENST00000346183|NFATC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2919921875	2	519.297507	1036.58046	-0.49493	-0.00025702	0.30967	0.00016081	-0.18526	-9.6203E-05	519.2975489972556	72.749	0.46103	72.749	72.533	72.994	0					12	10	2	0	0	0	0.024427	1	8890	8890		26.693	0	1	143830	+		53287	20478	37187	37248	58539	58539					0.06363493900221329
NEPPHQIF	8	Unmodified	_NEPPHQIF_					0	0	0		ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.K855Pfs*26|1|0.09|ENSG00000142687|chr1:35444254-35444255|-/CTTCTTTTCTCTGG|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L;nc|ENSG00000142687|Q8IZA0-3|KIAA0319L;ENST00000474856.1_1_1:35909756-35909897:-|nuORF	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7561340332031	2	491.243067	980.47158	-0.70351	-0.0003456	-0.87573	-0.0004302	-1.5792	-0.00077579	491.24436544483973	43.441	0.64941	43.441	43.186	43.836	0					26	17	3	0	0	0	0.027866	1	4093	4093		40.573	13.88	1	185600			53288	5584	37188	37249	58540	58540					-0.019436722793670924
NEPPPVMGLAI	11	Unmodified	_NEPPPVMGLAI_					0	0	0			REV__ENST00000498371.1_1_21:34640622-34652096:+|nuORF	REV__ENST00000498371.1_1_21:34640622-34652096:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.778564453125	2	569.302267	1136.58998	0.51447	0.00029289	2.7295	0.0015539	3.244	0.0018468	569.3038381893666	32.597	0.36723	32.404	32.249	32.616	-0.19261					22	8	3	0	0	0	0.024759	1	2262	2262		26.693	0	1	380970	+		53289	33761	37189	37250	58541	58541					0.027149389141186475
NEPSSFSRQI	10	Unmodified	_NEPSSFSRQI_					0	0	0			REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	REV__ENST00000265882.5_1_2:80389676-80390174:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.265869140625	2	582.785827	1163.5571	-0.65637	-0.00038252	-2.0832	-0.001214	-2.7395	-0.0015966	582.7845967449144	61.84	0.59729	61.583	61.301	61.898	-0.25725					22	14	2	0	0	0	0.03519	1	6950	6950		47.96	15.147	1	220630	+		53290	20562	37190	37251	58542	58542					-0.018135518843791942
NEPTLIYPD	9	Unmodified	_NEPTLIYPD_					0	0	0			REV__nc|ENSG00000115380|Q12805-5|EFEMP1	REV__nc|ENSG00000115380|Q12805-5|EFEMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2618408203125	2	531.261122	1060.50769	0.075177	3.9939E-05	0.12114	6.4358E-05	0.19632	0.0001043	531.261172765344	103.97	0.55952	103.85	103.52	104.08	-0.12561					26	13	3	0	0	0	0.94779	1	12925	12925		29.17	1.2878	1	217030	+		53291	22200	37191	37252	58543	58543					-0.020142598931670364
NEPTQWPL	8	Unmodified	_NEPTQWPL_					0	0	0			REV__ENST00000334232.8_2_1:236557687-236557723:+|nuORF	REV__ENST00000334232.8_2_1:236557687-236557723:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.78167724609375	2	492.742899	983.471246	-0.61243	-0.00030177	-3.2125	-0.0015829	-3.8249	-0.0018847	492.74119724642804	32.813	0.34126	32.819	32.625	32.967	0.0066223					13	8	2	0	0	0	0.027866	1	2283	2283		51.335	10.763	1	85325	+		53292	30514	37192	37253	58544	58544					-0.02115091999235119
NEPVRVEVDV	10	Unmodified	_NEPVRVEVDV_					0	0	0			REV__nc|ENSG00000141027|O75376-3|NCOR1	REV__nc|ENSG00000141027|O75376-3|NCOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.7902221679688	2	578.303852	1154.59315	-0.54912	-0.00031756	4.1933	0.002425	3.6441	0.0021074	578.3059208639543	77.538	1.1085	77.376	77.097	78.205	-0.16196					42	25	2	0	0	0	0.03519	1	9307	9307		37.812	7.3079	1	154350	+		53293	24060	37193	37254	58545	58545					0.022039052924583302
NEPVVLLRHQT	11	Unmodified	_NEPVVLLRHQT_					0	0	0			REV__nc|ENSG00000206203|Q96PF2|TSSK2	REV__nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.284423828125	3	435.913971	1304.72008	-0.022048	-9.6111E-06	2.9852	0.0013013	2.9632	0.0012917	435.915269756384	53.102	0.82626	53.198	52.98	53.806	0.095669					46	22	3	0	0	0	0.024816	1	5630	5630		8.0344	0.22983	1	464460	+		53294	37091	37194	37255	58546	58546					0.07991251237444885
NEPVVLLRHQT	11	Unmodified	_NEPVVLLRHQT_					0	0	0			REV__nc|ENSG00000206203|Q96PF2|TSSK2	REV__nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	435.913971	1304.72008	0.13246	5.7739E-05	3.0429	0.0013265	3.1754	0.0013842	435.9151989821894	53.341	0.67731	53.341	53.049	53.726	0	0.074822	-0.00023076	NaN	7.3413	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502260	+		53295	37091	37194	37255							0.07991251237444885
NEPVVLLRHQT	11	Unmodified	_NEPVVLLRHQT_					0	0	0			REV__nc|ENSG00000206203|Q96PF2|TSSK2	REV__nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	435.913971	1304.72008	-0.62739	-0.00027349	3.7358	0.0016285	3.1084	0.001355	435.9156410674552	53.406	0.8745	53.259	52.873	53.748	-0.14723	-0.0070002	0.00067532	NaN	7.3413	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548240	+		53296	37091	37194	37255							0.07991251237444885
NEPVYAFFII	10	Unmodified	_NEPVYAFFII_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.8182983398438	2	606.818607	1211.62266	-0.32075	-0.00019464	0.16435	9.9732E-05	-0.1564	-9.4905E-05	606.8186527529061	101.51	1.0527	101.38	101.17	102.23	-0.13156					51	24	4	0	0	0	1.0992	1	12612	12612		32.812	0	1	568810	+		53297	23406	37195	37256	58547	58547					0.025314693086102125
NEPWLTMP	8	Unmodified	_NEPWLTMP_					0	0	0			REV__ENST00000378466.7_2_1:2445901-2449610:-|nuORF	REV__ENST00000378466.7_2_1:2445901-2449610:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7793273925781	2	494.233853	986.453153	-0.25549	-0.00012627	3.5249	0.0017421	3.2694	0.0016159	494.2354668589291	24.114	0.57954	23.899	23.554	24.134	-0.2151					19	12	2	0	0	0	0.027866	1	1027	1027		16.473	0	1	89553	+		53298	31402	37196	37257	58548	58548					-0.04061550245592116
NEQIGPCLP	9	Unmodified	_NEQIGPCLP_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-6|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8117370605469	2	485.73676	969.458967	-0.078912	-3.833E-05	-2.0994	-0.0010198	-2.1783	-0.0010581	485.7354973333356	42.208	0.52057	42.085	41.786	42.307	-0.12299					21	13	2	0	0	0	0.024374	1	3793	3793		32.812	7.3622	1	130460			53299	3871	37197	37258	58549	58549					-0.02698451733931506
NEQKRPKIP	9	Unmodified	_NEQKRPKIP_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.3012084960938	2	555.324922	1108.63529	-0.99457	-0.00055231	-1.4272	-0.00079257	-2.4218	-0.0013449	555.3239874165749	46.621	0.46086	46.468	46.276	46.736	-0.15301					20	12	2	0	0	0	0.024523	1	4599	4599		21.96	1.4781	1	135480	+		53300	24714	37198	37259	58550	58550					0.08531925491524817
NEQLIQLVEQH	11	Unmodified	_NEQLIQLVEQH_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7902526855469	3	450.905253	1349.69393	0.69189	0.00031198	3.6302	0.0016369	4.3221	0.0019488	450.9071961669221	19.955	0.68343	19.732	19.483	20.167	-0.22344					16	13	2	0	0	0	0.024734	1	490	490		24.276	7.7461	1	10191	+		53301	20110	37199	37260	58551	58551					0.03306937275328892
NEQPSVERETE	11	Unmodified	_NEQPSVERETE_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1;REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.85357666015625	3	439.868756	1316.58444	-0.20459	-8.9992E-05	1.9098	0.00084004	1.7052	0.00075005	439.86886241643344	32.156	0.30224	31.919	31.74	32.042	-0.23666					9	6	2	0	0	0	0.024723	1	2173	2173		14.779	0	1	52307	+		53302	24428;36753	37200	37261	58552	58552					-0.06119113134627696
NEQQTDESPSI	11	Unmodified	_NEQQTDESPSI_					0	0	0			REV__ENSG00000111802|ENST00000378198|TDP2	REV__ENSG00000111802|ENST00000378198|TDP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.89178466796875	3	416.517723	1246.53134	-0.249	-0.00010371	-3.428	-0.0014278	-3.677	-0.0015316	416.5161698060613	33.702	0.44158	33.471	33.273	33.714	-0.23107					18	10	2	0	0	0	0.024726	1	2422	2422		15.337	1.2515	1	158000	+		53303	21947	37201	37262	58553	58553					-0.08206490917314113
NEQRLQLL	8	Unmodified	_NEQRLQLL_					0	0	0			REV__ENSG00000158286|ENST00000377939|RNF207	REV__ENSG00000158286|ENST00000377939|RNF207	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2739562988281	2	507.290548	1012.56654	-0.36259	-0.00018394	2.8423	0.0014419	2.4797	0.0012579	507.7939048260339	67.336	0.11629	67.048	66.992	67.108	-0.28834					4	2	2	0	0	0	0.027866	1	8005	8005		45.952	0	1	39244	+		53304	25186	37202	37263	58554	58554					0.06076261191822141
NEQRLRGLLQF	11	Unmodified	_NEQRLRGLLQF_					0	0	0			REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2881164550781	3	458.59312	1372.75753	0.027982	1.2832E-05	-0.98937	-0.00045372	-0.96139	-0.00044089	458.59261757713233	52.72	0.52251	52.53	52.308	52.831	-0.18982					23	12	2	0	0	0	0.02477	1	5461	5461		28.577	15.619	1	656050	+		53305	19121	37203	37264	58555	58555					0.08606342503094311
NEQRLRGLLQF	11	Unmodified	_NEQRLRGLLQF_					0	0	0			REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	458.59312	1372.75753	-0.032387	-1.4853E-05	-0.9608	-0.00044062	-0.99319	-0.00045547	458.59263413098813	52.711	0.95581	52.711	52.311	53.267	0	0.11691	0.00032027	NaN	47.228	54	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	785250	+		53306	19121	37203	37264							0.08606342503094311
NEQRLRGLLQF	11	Unmodified	_NEQRLRGLLQF_					0	0	0			REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	458.59312	1372.75753	0.34799	0.00015959	-1.2507	-0.00057358	-0.90274	-0.00041399	458.5925312705107	52.773	0.58476	52.626	52.326	52.91	-0.14723	0.03106	-7.8607E-05	NaN	47.228	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1033100	+		53307	19121	37203	37264							0.08606342503094311
NEQRLRGLLQF	11	Unmodified	_NEQRLRGLLQF_					0	0	0			REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	458.59312	1372.75753	0.46186	0.0002118	-1.2579	-0.00057688	-0.79607	-0.00036507	458.5924870318437	52.522	0.7326	52.614	52.28	53.013	0.091938	0.019259	-8.8504E-05	NaN	47.228	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1263600	+		53308	19121	37203	37264							0.08606342503094311
NEQRLRGLLQF	11	Unmodified	_NEQRLRGLLQF_					0	0	0			REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	458.59312	1372.75753	-0.25328	-0.00011615	-0.87936	-0.00040327	-1.1326	-0.00051942	458.5926341503778	52.587	0.55798	52.46	52.195	52.753	-0.12705	-0.13454	0.00043232	NaN	47.228	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736070	+		53309	19121	37203	37264							0.08606342503094311
NEQRLRGLLQF	11	Unmodified	_NEQRLRGLLQF_					0	0	0			REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	REV__AluSp_dup3052|chr1:154173383-154173680:+|1.053535943769599|0.0443564282974505|4.57|521.0|3|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	458.59312	1372.75753	0.42365	0.00019428	-1.8352	-0.0008416	-1.4115	-0.00064732	458.5923190565748	52.884	0.59592	52.626	52.326	52.922	-0.25839	0.03155	-0.00088267	NaN	47.228	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502350	+		53310	19121	37203	37264							0.08606342503094311
NEQYLETMVK	10	Unmodified	_NEQYLETMVK_					0	0	0			REV__ENSG00000150527|ENST00000640607|MIA2	REV__ENSG00000150527|ENST00000640607|MIA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.88494873046875	3	418.872673	1253.59619	0.26864	0.00011253	0.24952	0.00010452	0.51816	0.00021704	418.8736571783529	37.297	0.70804	37.088	36.726	37.434	-0.2092					39	17	4	0	0	0	0.03519	1	2934	2934		36.318	0	1	141470	+		53311	24721	37204	37265	58556	58556					-0.020465876450543874
NERCLERLKQY	11	Unmodified	_NERCLERLKQY_					0	0	0			REV__ENSG00000150456|ENST00000382758|EEF1AKMT1	REV__ENSG00000150456|ENST00000382758|EEF1AKMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.2557678222656	3	484.585637	1450.73508	0.1906	9.2364E-05	-0.061674	-2.9886E-05	0.12893	6.2478E-05	484.5856724655169	45.877	0.36616	45.781	45.632	45.999	-0.096653					12	9	2	0	0	0	0.024738	1	4412	4412		37.6	17.285	1	96382	+		53312	24717	37205	37266	58557	58557					0.027743750431454828
NERCLERLKQY	11	Unmodified	_NERCLERLKQY_					0	0	0			REV__ENSG00000150456|ENST00000382758|EEF1AKMT1	REV__ENSG00000150456|ENST00000382758|EEF1AKMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	484.585637	1450.73508	-0.55736	-0.00027009	-0.15697	-7.6068E-05	-0.71434	-0.00034616	484.919880153679	46.039	0.37264	45.836	45.632	46.005	-0.20226	0.027811	-9.3187E-05	NaN	37.6	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53251	+		53313	24717	37205	37266							0.027743750431454828
NERENLPL	8	Unmodified	_NERENLPL_					0	0	0		ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2976379394531	2	492.759081	983.503609	-0.84453	-0.00041615	-3.325	-0.0016384	-4.1695	-0.0020546	492.7571816097032	47.883	1.7953	47.785	47.2	48.995	-0.097553					74	48	3	0	0	0	0.027866	1	4651	4651		39.253	2.0937	1	238450			53314	712	37206	37267	58558	58558					0.01119695403770038
NERFGEPLL	9	Unmodified	_NERFGEPLL_					0	0	0			REV__ENSG00000180332|ENST00000379108|KCTD4	REV__ENSG00000180332|ENST00000379108|KCTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2434692382812	2	537.782556	1073.55056	-1.8465	-0.00099304	0.5175	0.0002783	-1.329	-0.00071474	537.7829727029334	55.987	0.66948	55.772	55.489	56.158	-0.21551					23	17	2	0	0	0	0.024209	1	5995	5995		56.721	0	1	252410	+		53315	27332	37207	37268	58559	58559					0.016725549548937124
NERILRLL	8	Unmodified	_NERILRLL_					0	0	0		NPC1-ANKRD29|1|fusion;nc|ENSG00000154065|Q8N6D5-3|ANKRD29;ENSG00000154065|ENST00000592179|ANKRD29	NPC1-ANKRD29|1|fusion	NPC1-ANKRD29|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7901000976562	2	513.824558	1025.63456	-0.29917	-0.00015372	0.56059	0.00028804	0.26141	0.00013432	513.8242423947729	43.451	0.79844	43.338	42.815	43.614	-0.11253					35	21	2	0	0	0	0.027866	1	3956	3956		25.45	0	1	309890			53316	18886	37208	37269	58560	58560					0.12277130842471706
NERINNRS	8	Unmodified	_NERINNRS_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.78741455078125	2	501.757404	1001.50025	-0.89618	-0.00044966	3.1234	0.0015672	2.2272	0.0011175	501.7590524997563	59.867	0.48875	59.946	59.791	60.28	0.078884					18	12	2	0	0	0	0.027866	1	6830	6830		34.173	0.25091	1	199760	+		53317	19939	37209	37270	58561	58561					-0.00043554650233090797
NERKGPALK	9	Unmodified	_NERKGPALK_					0	0	0		ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7814025878906	2	506.79854	1011.58253	0.16538	8.3813E-05	-0.86181	-0.00043676	-0.69643	-0.00035295	506.7988902422753	52.794	0.3543	52.647	52.366	52.72	-0.14724					14	8	2	0	0	0	0.024418	1	5638	5638		37.812	13.292	1	578580			53318	12225	37210	37271	58562	58562					0.07719967428704422
NERLHRAL	8	Unmodified	_NERLHRAL_					0	0	0		nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2554626464844	2	504.788507	1007.56246	-1.0693	-0.00053977	3.0446	0.0015369	1.9753	0.00099713	505.29263706111476	41.216	0.65003	40.985	40.624	41.274	-0.2303					21	13	2	0	0	0	0.027866	1	3605	3605		17.365	0	1	254950			53319	1116	37211	37272	58563	58563					0.0589821648875386
NERLHRAL	8	Unmodified	_NERLHRAL_					0	0	0		nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	504.788507	1007.56246	-0.34298	-0.00017313	3.6831	0.0018592	3.3401	0.001686	505.29241372108277	41.135	0.5784	40.907	40.581	41.159	-0.2278	-0.039087	0.00024552	NaN	11.511	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221960			53320	1116	37211	37272							0.0589821648875386
NERMLADA	8	Unmodified	_NERMLADA_					0	0	0		ITIH2|p.D636N|1|0.34|ENSG00000151655|chr10:7735040-7735040|G/A|missense_variant	ITIH2|p.D636N|1|0.34|ENSG00000151655|chr10:7735040-7735040|G/A|missense_variant	ITIH2|p.D636N|1|0.34|ENSG00000151655|chr10:7735040-7735040|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2684631347656	2	460.218734	918.422915	-0.23058	-0.00010612	-3.2412	-0.0014917	-3.4718	-0.0015978	460.2171454696688	40.497	0.8033	40.272	39.928	40.731	-0.225					48	21	3	0	0	0	0.027866	1	3456	3456		18.324	0	1	1255200			53321	17777	37212	37273	58564	58564					-0.039559089108024637
NERNALIVF	9	Unmodified	_NERNALIVF_					0	0	0			REV__ENSG00000115827|ENST00000375255|DCAF17	REV__ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2796020507812	2	538.298373	1074.58219	-0.85578	-0.00046066	1.1322	0.00060944	0.27638	0.00014878	538.298791835289	45.355	0.53571	45.399	45.145	45.681	0.043877					26	15	3	0	0	0	0.024523	1	4382	4382		21.96	0	1	518780	+		53322	22233	37213	37274	58565	58565					0.047885477088584594
NERQRRKKI	9	Unmodified	_NERQRRKKI_					0	0	0		TADA2A|p.K216N|1|0.22|ENSG00000276234|chr17:37458567-37458567|G/T|missense_variant	TADA2A|p.K216N|1|0.22|ENSG00000276234|chr17:37458567-37458567|G/T|missense_variant	TADA2A|p.K216N|1|0.22|ENSG00000276234|chr17:37458567-37458567|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5704650878906	3	409.917938	1226.73199	0.050554	2.0723E-05	-4.3216	-0.0017715	-4.271	-0.0017508	410.2505299921001	32.22	0.23386	32.232	32.104	32.338	0.011799					8	5	2	0	0	0	0.024344	1	2198	2198		30.318	0	1	44781			53323	38053	37214	37275	58566	58566					0.12768912771321084
NERRGRTRSF	10	Unmodified	_NERRGRTRSF_					0	0	0		ENST00000361084.9_1_1:156031016-156031109:+|nuORF	ENST00000361084.9_1_1:156031016-156031109:+|nuORF	ENST00000361084.9_1_1:156031016-156031109:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	639.845458984375	2	639.842333	1277.67011	-0.29803	-0.00019069	0.8335	0.00053331	0.53547	0.00034262	640.3446836114837	100.77	0.35072	100.6	100.41	100.77	-0.17178					16	10	2	0	0	0	1.0616	1	12506	12506		37.812	1.3648	1	245280			53324	12784	37215	37276	58567	58567					0.042385613521673804
NERRSFVK	8	Unmodified	_NERRSFVK_					0	0	0			REV__ENSG00000180257|ENST00000444460|ZNF816	REV__ENSG00000180257|ENST00000444460|ZNF816	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7804565429688	2	518.28834	1034.56213	-0.1963	-0.00010174	-0.88071	-0.00045646	-1.077	-0.0005582	518.2880235649127	25.581	0.54316	25.661	25.336	25.879	0.080088					24	12	4	0	0	0	0.027866	1	1141	1141		18.262	0.79408	1	199830	+		53325	27324	37216	37277	58568	58568					0.04622796768899207
NERTEEAE	8	Unmodified	_NERTEEAE_					0	0	0		ENSG00000112706|ENST00000369950|IMPG1	ENSG00000112706|ENST00000369950|IMPG1	ENSG00000112706|ENST00000369950|IMPG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2709045410156	2	489.21216	976.409768	-0.35687	-0.00017458	-4.313	-0.00211	-4.6699	-0.0022846	489.2102201644388	39.293	1.3269	39.07	38.789	40.116	-0.22311					45	34	2	0	0	0	0.027866	1	3288	3288		37.159	5.2042	1	108300			53326	3235	37217	37278	58569	58569					-0.07938068489193029
NERVRQIE	8	Unmodified	_NERVRQIE_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2587280273438	2	522.283254	1042.55196	-1.1102	-0.00057982	1.2934	0.00067551	0.18321	9.5688E-05	522.284035423431	22.424	0.95291	22.498	21.931	22.884	0.073954					40	19	4	0	0	0	0.027866	1	749	749		45.952	0	1	104370	+		53327	27537	37218	37279	58570	58570					0.03238189043690909
NERVVIMNS	9	Unmodified	_NERVVIMNS_					0	0	0		ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24	ENSG00000008838|ENST00000394128|MED24	ENSG00000008838|ENST00000394128|MED24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2676391601562	2	531.274041	1060.53353	0.12048	6.4007E-05	2.0053	0.0010654	2.1258	0.0011294	531.7772126675952	71.761	0.41019	71.771	71.543	71.953	0.0097733					12	10	2	0	0	0	0.024288	1	8610	8610		52.937	5.2794	1	77664			53328	852	37219	37280	58571	58571					0.0056831107744983456
NESCNGPVHS	10	Unmodified	_NESCNGPVHS_					0	0	0			REV__ENST00000466618.1_1_2:242002912-242027813:+|nuORF	REV__ENST00000466618.1_1_2:242002912-242027813:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8158569335938	2	522.21418	1042.41381	-0.4503	-0.00023515	0.002342	1.223E-06	-0.44796	-0.00023393	522.2140601033705	64.604	0.377	64.649	64.448	64.825	0.045502					14	9	2	0	0	0	0.03519	1	7526	7526		32.812	20.606	1	91463	+		53329	33043	37220	37281	58572	58572					-0.10570302267115039
NESIDSINRR	10	Unmodified	_NESIDSINRR_					0	0	0			REV__ENSG00000164308|ENST00000437043|ERAP2	REV__ENSG00000164308|ENST00000437043|ERAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	601.7330322265625	2	602.307458	1202.60036	-0.698	-0.00042041	-2.6363	-0.0015879	-3.3343	-0.0020083	602.3056724647747	27.274	0.50756	27.031	26.828	27.335	-0.24217					18	11	3	0	0	0	0.03519	1	1526	1526		16.717	0	1	145970	+		53330	25735	37221	37282	58573	58573					0.007166378929014172
NESIKQKR	8	Unmodified	_NESIKQKR_					0	0	0			REV__nc|ENSG00000080802|O95628-5|CNOT4	REV__nc|ENSG00000080802|O95628-5|CNOT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.78851318359375	2	501.788173	1001.56179	-0.41074	-0.0002061	-0.28113	-0.00014107	-0.69187	-0.00034717	501.7880623279018	32.269	0.87777	32.269	31.949	32.827	0					45	22	3	0	0	0	0.97794	1	2222	2222		40.778	1.5253	1	3247500	+		53331	20662	37222	37283	58574	58574					0.061073770490338575
NESLQEEWI	9	Unmodified	_NESLQEEWI_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.3008422851562	2	574.266936	1146.51932	-0.38521	-0.00022121	-3.1581	-0.0018136	-3.5433	-0.0020348	574.2650572910234	32.19	0.39231	32.202	31.984	32.376	0.011799					14	9	2	0	0	0	0.024466	1	2213	2213		31.53	7.0106	1	84716			53332	6636	37223	37284	58575	58575					-0.04808062869847163
NESLQEEWI	9	Unmodified	_NESLQEEWI_					0	0	0		ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	574.266936	1146.51932	-0.88929	-0.00051069	-2.3285	-0.0013372	-3.2178	-0.0018479	574.2656033132631	32.034	0.39905	32.097	31.839	32.238	0.062889	-0.052309	0.00028117	NaN	18.262	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96986			53333	6636	37223	37284							-0.04808062869847163
NESNKIYVV	9	Unmodified	_NESNKIYVV_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.248046875	2	533.282389	1064.55022	-1.155	-0.00061597	-3.5665	-0.001902	-4.7215	-0.0025179	533.280476871062	48.739	0.18238	48.638	48.544	48.726	-0.1008					8	4	3	0	0	0	0.024541	1	4870	4870		14.137	0.68308	1	434520			53334	7150	37224	37285	58576	58576					0.02053135235018999
NESQLLKEYDE	11	Unmodified	_NESQLLKEYDE_					0	0	0			REV__ENSG00000102547|ENST00000409308|CAB39L	REV__ENSG00000102547|ENST00000409308|CAB39L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.7975158691406	3	456.549023	1366.62524	-0.41785	-0.00019077	1.9346	0.00088326	1.5168	0.00069249	456.5513766810962	28.353	0.12205	28.201	28.121	28.243	-0.15195					4	2	2	0	0	0	0.024767	1	1623	1623		25.068	0.79185	1	14072	+		53335	21315	37225	37286	58577	58577					-0.04340771815031985
NESSDDEVV	9	Unmodified	_NESSDDEVV_					0	0	0			REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2355041503906	2	497.204001	992.393449	-0.2974	-0.00014787	-0.33776	-0.00016794	-0.63516	-0.0003158	497.2045123550273	30.91	0.29539	30.758	30.511	30.806	-0.15231					8	6	2	0	0	0	0.024457	1	1971	1971		37.159	8.0096	1	21594	+		53336	23732	37226	37287	58578	58578					-0.1030519444593665
NESSPMKEV	9	Unmodified	_NESSPMKEV_					0	0	0			REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant	REV__ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8009338378906	2	510.736957	1019.45936	0.69153	0.00035319	-2.9541	-0.0015088	-2.2626	-0.0011556	510.7351765431994	59.571	0.37118	59.371	59.245	59.616	-0.20016					14	9	2	0	0	0	0.024511	1	6779	6779		25.574	0	1	110290	+		53337	28419	37227	37288	58579	58579					-0.04959076804732376
NESSRMEI	8	Unmodified	_NESSRMEI_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.74761962890625	2	483.221474	964.428395	0.10482	5.065E-05	-1.9886	-0.00096092	-1.8838	-0.00091027	483.22039281360884	58.706	0.54891	58.519	58.173	58.721	-0.18705					24	14	2	0	0	0	0.027866	1	6655	6655		32.812	1.2826	1	205380			53338	8932	37228	37289	58580	58580					-0.05524230118965079
NESSRMEI	8	Unmodified	_NESSRMEI_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.221474	964.428395	0.45046	0.00021767	-2.0872	-0.0010086	-1.6367	-0.00079091	483.22025768002135	58.427	0.65926	58.427	58.091	58.75	0	0.027546	-0.00020725	NaN	32.812	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345000			53339	8932	37228	37289							-0.05524230118965079
NESSRMEI	8	Unmodified	_NESSRMEI_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.221474	964.428395	-0.15015	-7.2557E-05	-1.4135	-0.00068306	-1.5637	-0.00075561	483.22057973046117	58.161	0.6566	58.253	58.015	58.671	0.091217	-0.14709	0.0004438	NaN	32.812	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280490			53340	8932	37228	37289							-0.05524230118965079
NESWIHQPA	9	Unmodified	_NESWIHQPA_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7651977539062	2	541.256705	1080.49886	-0.26643	-0.0001442	-0.2086	-0.00011291	-0.47503	-0.00025711	541.2568246893561	49.789	0.67944	49.509	49.123	49.802	-0.27977					36	17	3	0	0	0	0.024292	1	5029	5029		40.778	15.204	1	859490	+		53341	26997	37229	37290	58581	58581					-0.03817188739003541
NESWIHQPA	9	Unmodified	_NESWIHQPA_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.256705	1080.49886	-0.57374	-0.00031054	0.15898	8.6049E-05	-0.41476	-0.00022449	541.2565500322174	49.358	0.53796	49.258	48.992	49.529	-0.1008	-0.11096	5.3558E-05	NaN	40.778	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	914590	+		53342	26997	37229	37290							-0.03817188739003541
NESWIHQPA	9	Unmodified	_NESWIHQPA_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.256705	1080.49886	-0.67812	-0.00036704	0.17077	9.2433E-05	-0.50735	-0.00027461	541.2565920644898	49.52	0.60847	49.339	48.961	49.57	-0.18071	-0.029702	6.6324E-05	NaN	40.778	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039300	+		53343	26997	37229	37290							-0.03817188739003541
NETFVDKDF	9	Unmodified	_NETFVDKDF_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.3216552734375	2	557.756204	1113.49785	-0.62478	-0.00034847	-3.2318	-0.0018025	-3.8566	-0.002151	557.75420591942	28.789	0.67618	28.64	28.324	29	-0.14952					29	15	3	0	0	0	0.024427	1	1692	1692		19.997	5.1319	1	193590			53344	4483	37230	37291	58582	58582					-0.054354478985715104
NETGMTAKTEK	11	Unmodified	_NETGMTAKTEK_					0	0	0			REV__SLCO2B1|p.P42Qfs*23|1|0.28|ENSG00000137491|chr11:75162762-75162762|C/-|frameshift_variant	REV__SLCO2B1|p.P42Qfs*23|1|0.28|ENSG00000137491|chr11:75162762-75162762|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.8631896972656	3	403.864177	1208.5707	0.049494	1.9989E-05	-2.5191	-0.0010174	-2.4697	-0.0009974	403.86303347474654	27.759	0.94269	27.591	27.23	28.172	-0.16816					55	22	3	0	0	0	0.9728	1	1559	1559		37.6	0	1	3934500	+		53345	23759	37231	37292	58583	58583					-0.025240621674583963
NETICNSKLK	10	Unmodified	_NETICNSKLK_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.2971801757812	2	575.300255	1148.58596	-0.68674	-0.00039508	-3.9544	-0.002275	-4.6412	-0.0026701	575.2978458114727	43.941	0.6327	43.978	43.743	44.375	0.0369					44	17	3	0	0	0	1.0344	1	4094	4094		41.427	3.9184	1	3516900	+		53346	27366	37232	37293	58584	58584					0.017608494203841474
NETLFRNQ	8	Unmodified	_NETLFRNQ_					0	0	0		ATP11B-TFRC|1|fusion;ENSG00000072274|ENST00000360110|TFRC	ATP11B-TFRC|1|fusion;ENSG00000072274|ENST00000360110|TFRC	ATP11B-TFRC|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.84442138671875	2	511.256705	1020.49886	-0.49253	-0.00025181	-1.4209	-0.00072643	-1.9134	-0.00097824	511.256091782613	76.877	0.41134	76.649	76.36	76.772	-0.22843					14	9	2	0	0	0	0.027866	1	9429	9429		50.025	16.509	1	132300			53347	149;1475	37233	37294	58585	58585					-0.010571887390028678
NETPACVIV	9	Unmodified	_NETPACVIV_					0	0	0		ENST00000581080.1_1_17:38497421-38497688:-|nuORF	ENST00000581080.1_1_17:38497421-38497688:-|nuORF	ENST00000581080.1_1_17:38497421-38497688:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.76129150390625	2	473.239135	944.463718	0.017911	8.4763E-06	1.3513	0.00063948	1.3692	0.00064795	473.2394611732123	32.19	0.46507	32.202	32.023	32.488	0.011799					14	11	2	0	0	0	0.024319	1	2241	2241		39.253	3.6345	1	57148			53348	17159	37234	37295	58586	58586					-0.010735675911746512
NETPCHIFG	9	Unmodified	_NETPCHIFG_					0	0	0			REV__nc|ENSG00000089685|O15392|BIRC5	REV__nc|ENSG00000089685|O15392|BIRC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2818908691406	2	509.226559	1016.43857	1.8931	0.00096401	-1.836	-0.00093495	0.057073	2.9063E-05	509.22551877847974	24.305	0.43678	24.124	23.848	24.285	-0.18089					14	9	2	0	0	0	0.024523	1	988	988		15.642	0	1	42271	+		53349	20859	37235	37296	58587	58587					-0.06899622393746085
NETPRMDY	8	Unmodified	_NETPRMDY_					0	0	0			REV__nc|ENSG00000124493|Q14833-5|GRM4	REV__nc|ENSG00000124493|Q14833-5|GRM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2864379882812	2	513.221474	1024.42839	0.16159	8.293E-05	-3.9737	-0.0020394	-3.8121	-0.0019564	513.2191936945405	72.008	0.33224	72.018	71.878	72.21	0.0097733					10	8	2	0	0	0	0.027866	1	8690	8690		21.96	0	1	65930	+		53350	36631	37236	37297	58588	58588					-0.08284230118965752
NETRIRNTD	9	Unmodified	_NETRIRNTD_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.31787109375	2	559.781076	1117.5476	-1.3749	-0.00076965	2.3463	0.0013134	0.97136	0.00054375	559.7820680171012	65.311	0.65786	65.039	64.639	65.297	-0.27282					33	15	3	0	0	0	0.024323	1	7671	7671		27.882	0	1	296190	+		53351	26916	37237	37298	58589	58589					-0.006473201699236597
NETRRKKFV	9	Unmodified	_NETRRKKFV_					0	0	0			REV__nc|ENSG00000120688|O75554-2|WBP4	REV__nc|ENSG00000120688|O75554-2|WBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.343505859375	2	589.343646	1176.67274	-1.3212	-0.00077864	0.069689	4.1071E-05	-1.2515	-0.00073757	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	0.93097	1	11225	11225		30.318	2.2362	1	5175100	+		53352	36613	37238	37299	58590	58590					0.09147016757128767
NETTDAEHI	9	Unmodified	_NETTDAEHI_					0	0	0			REV__nc|ENSG00000163399|P05023-2|ATP1A1	REV__nc|ENSG00000163399|P05023-2|ATP1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2608032226562	2	515.22781	1028.44107	-0.64377	-0.00033169	-2.6854	-0.0013836	-3.3292	-0.0017153	515.2256167671235	30.05	0.36658	30.058	29.839	30.205	0.0086708					12	8	3	0	0	0	0.024405	1	1891	1891		35.618	0	1	67641	+		53353	25564	37239	37300	58591	58591					-0.072014954550923
NETTFAKLL	9	Unmodified	_NETTFAKLL_					0	0	0		ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.801025390625	2	518.787307	1035.56006	-0.53192	-0.00027596	-1.2426	-0.00064466	-1.7746	-0.00092062	518.7868733319307	52.254	0.49464	52.254	51.977	52.472	0					22	12	3	0	0	0	0.024484	1	5564	5564		37.812	0	1	449840			53354	10438	37240	37301	58592	58592					0.04370323240414109
NETYDVYCFA	10	Unmodified	_NETYDVYCFA_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN;ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	nc|ENSG00000157766|P16112-3|ACAN;ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.5384216308594	3	408.834106	1223.48049	-0.20941	-8.5616E-05	4.442	0.001816	4.2326	0.0017304	408.83584201945683	30.583	0.62747	30.405	30.203	30.831	-0.17818					27	14	2	0	0	0	0.03519	1	1981	1981		18.531	0	1	394880			53355	6621;14	37241	37302	58593	58593					-0.12231111495884761
NETYNQPV	8	Unmodified	_NETYNQPV_					0	0	0			REV__nc|ENSG00000214193|A4FU49|SH3D21	REV__nc|ENSG00000214193|A4FU49|SH3D21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7798156738281	2	482.722164	963.429775	0.056825	2.743E-05	4.3825	0.0021155	4.4393	0.002143	482.72402196181133	50.058	0.32255	49.907	49.708	50.031	-0.1512					15	8	2	0	0	0	0.027866	1	5164	5164		37.159	14.117	1	242610	+		53356	28774	37242	37303	58594	58594					-0.05340272758564879
NEVALFLPT	9	Unmodified	_NEVALFLPT_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2793273925781	2	502.276575	1002.5386	-0.48241	-0.0002423	4.1895	0.0021043	3.707	0.001862	502.278559597464	80.862	0.5927	80.862	80.585	81.178	0					32	14	3	0	0	0	0.024511	1	10019	10019		25.574	4.6271	1	603550	+		53357	22180	37243	37304	58595	58595					0.037429382116897614
NEVALFLPT	9	Unmodified	_NEVALFLPT_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.276575	1002.5386	-0.95846	-0.00048141	4.555	0.0022879	3.5966	0.0018065	502.27890090464524	80.981	0.59785	80.834	80.604	81.201	-0.14607	0.059566	0.00079315	NaN	25.574	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644800	+		53358	22180	37243	37304							0.037429382116897614
NEVALFLPT	9	Unmodified	_NEVALFLPT_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.276575	1002.5386	-0.86047	-0.00043219	4.7648	0.0023932	3.9043	0.001961	502.27889767799627	80.821	0.79736	80.845	80.573	81.37	0.023911	0.069921	0.0010038	NaN	25.574	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563210	+		53359	22180	37243	37304							0.037429382116897614
NEVALFLPT	9	Unmodified	_NEVALFLPT_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.276575	1002.5386	0.14598	7.3322E-05	3.018	0.0015159	3.164	0.0015892	502.27798119008384	80.946	0.76917	80.708	80.369	81.138	-0.23784	-0.067027	-0.00075086	NaN	25.574	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461030	+		53360	22180	37243	37304							0.037429382116897614
NEVALFLPT	9	Unmodified	_NEVALFLPT_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.276575	1002.5386	0.21933	0.00011017	2.5212	0.0012664	2.7406	0.0013765	502.27774142861557	80.897	1.1481	80.69	80.01	81.158	-0.20633	-0.084583	-0.0012499	NaN	25.574	53	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433670	+		53361	22180	37243	37304							0.037429382116897614
NEVALFLPT	9	Unmodified	_NEVALFLPT_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.276575	1002.5386	-0.43047	-0.00021621	3.4483	0.001732	3.0179	0.0015158	502.2781503283439	80.856	1.0714	80.71	80.076	81.147	-0.146	-0.065152	-0.00031857	NaN	25.574	53	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514480	+		53362	22180	37243	37304							0.037429382116897614
NEVARQLL	8	Unmodified	_NEVARQLL_					0	0	0			REV__ENSG00000183837|ENST00000593810|PNMA3	REV__ENSG00000183837|ENST00000593810|PNMA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7472229003906	2	471.771991	941.529429	1.5174	0.00071586	-1.2375	-0.00058382	0.27989	0.00013204	471.7712382205399	36.947	0.51035	36.947	36.685	37.195	0					22	12	2	0	0	0	0.027866	1	2948	2948		25.574	0	1	919690	+		53363	27614	37244	37305	58596	58596					0.05632589646052111
NEVARQLL	8	Unmodified	_NEVARQLL_					0	0	0			REV__ENSG00000183837|ENST00000593810|PNMA3	REV__ENSG00000183837|ENST00000593810|PNMA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.771991	941.529429	0.36788	0.00017356	-0.046126	-2.1761E-05	0.32176	0.0001518	471.77179232727013	36.793	0.58236	36.729	36.47	37.052	-0.063385	-0.14402	0.00021473	NaN	25.574	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876820	+		53364	27614	37244	37305							0.05632589646052111
NEVARQLL	8	Unmodified	_NEVARQLL_					0	0	0			REV__ENSG00000183837|ENST00000593810|PNMA3	REV__ENSG00000183837|ENST00000593810|PNMA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.771991	941.529429	0.25056	0.00011821	0.24545	0.0001158	0.49601	0.000234	471.77197323573495	36.906	0.62185	36.944	36.648	37.27	0.038044	0.070612	0.00048984	NaN	25.574	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	822230	+		53365	27614	37244	37305							0.05632589646052111
NEVIRAPTV	9	Unmodified	_NEVIRAPTV_					0	0	0			REV__ENSG00000198074|ENST00000359579|AKR1B10	REV__ENSG00000198074|ENST00000359579|AKR1B10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8213195800781	2	499.785099	997.555644	0.098782	4.937E-05	-0.20435	-0.00010213	-0.10556	-5.2759E-05	499.78496353329393	68.036	0.82567	67.748	67.429	68.255	-0.28835					33	19	2	0	0	0	0.024359	1	8073	8073		40.058	0	1	1057900	+		53366	28381	37245	37306	58597	58597					0.05676858817514585
NEVKAIWW	8	Unmodified	_NEVKAIWW_					0	0	0		nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR	nc|ENSG00000010310|P48546-2|GIPR	nc|ENSG00000010310|P48546-2|GIPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2997436523438	2	523.276909	1044.53927	-0.58169	-0.00030439	-4.2293	-0.0022131	-4.811	-0.0025175	523.777084214323	76.53	0.20605	76.53	76.431	76.637	0					6	4	2	0	0	0	0.027866	1	9436	9436		25.45	0	1	63199			53367	873	37246	37307	58598	58598					0.01877777651429824
NEVKKKLE	8	Unmodified	_NEVKKKLE_					0	0	0		ENST00000466459.5_1_7:112097053-112108063:+|nuORF;nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1	ENST00000466459.5_1_7:112097053-112108063:+|nuORF	ENST00000466459.5_1_7:112097053-112108063:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7792663574219	2	494.295299	986.576045	-0.099827	-4.9344E-05	-0.53853	-0.00026619	-0.63836	-0.00031554	494.29491221318153	49.995	0.64318	49.995	49.768	50.411	0					26	18	2	0	0	0	0.027866	1	5181	5181		44.117	5.3107	1	1112300			53368	800	37247	37308	58599	58599					0.08222029477326487
NEVKMLSSY	9	Unmodified	_NEVKMLSSY_					0	0	0			REV__ENST00000521220.1_1_8:27593735-27605871:-|nuORF	REV__ENST00000521220.1_1_8:27593735-27605871:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7652587890625	2	535.762975	1069.5114	-1.6693	-0.00089437	-1.1974	-0.00064155	-2.8668	-0.0015359	536.2641036797376	48.945	0.76514	49.019	48.7	49.465	0.074192					49	20	3	0	0	0	0.024319	1	4963	4963		56.721	12.344	1	841370	+		53369	24552	37248	37309	58600	58600					-0.020579133909677694
NEVKQWRDQ	9	Unmodified	_NEVKQWRDQ_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.5843505859375	3	401.535271	1201.58398	0.90817	0.00036466	1.6578	0.00066567	2.566	0.0010303	401.5353277118193	25.11	0.25614	24.939	24.825	25.081	-0.17078					7	5	2	0	0	0	0.024447	1	1164	1164		20.03	0	1	28248			53370	5858	37249	37310	58601	58601					-0.00874443273187353
NEVLGRELL	9	Unmodified	_NEVLGRELL_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1;CON__Q2KJ83;ENSG00000121898|ENST00000241305|CPXM2	ENSG00000106624|ENST00000223357|AEBP1;CON__Q2KJ83;ENSG00000121898|ENST00000241305|CPXM2	ENSG00000106624|ENST00000223357|AEBP1	MSMS	OPSCC_39_ClassI_Rep-1	1	521.79638671875	2	521.798206	1041.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.801	1	68.801	68.301	69.301	0								0	0	0	0.16394	1	8264	8264		78.264	6.9681	1			+	53371	2802;546;3895	37250	37311	58602	58602					0.06273127989015848
NEVLGRELL	9	Unmodified	_NEVLGRELL_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1;CON__Q2KJ83;ENSG00000121898|ENST00000241305|CPXM2	ENSG00000106624|ENST00000223357|AEBP1;CON__Q2KJ83;ENSG00000121898|ENST00000241305|CPXM2	ENSG00000106624|ENST00000223357|AEBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8167114257812	2	521.798206	1041.58186	-1.0656	-0.00055601	1.0308	0.00053789	-0.034721	-1.8117E-05	521.7986036638192	64.659	0.81156	64.659	64.097	64.909	0					29	21	2	0	0	0	0.024319	1	7603	7603		39.253	13.679	1	227160		+	53372	2802;546;3895	37250	37311	58603	58603					0.06273127989015848
NEVLISLLET	10	Unmodified	_NEVLISLLET_					0	0	0		ENSG00000047648|ENST00000337414|ARHGAP6;nc|ENSG00000047648|O43182-3|ARHGAP6;ENST00000489330.6_1_X:11166772-11683098:-|nuORF;nc|ENSG00000047648|O43182-2|ARHGAP6;nc|ENSG00000047648|O43182-4|ARHGAP6;nc|ENSG00000047648|O43182-5|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7667846679688	2	565.818804	1129.62306	-0.44374	-0.00025108	-0.58475	-0.00033086	-1.0285	-0.00058194	565.8188526541834	40.163	1.4121	40.051	39.432	40.844	-0.11222					73	38	3	0	0	0	0.03519	1	3625	3625		34.173	0	1	1192200			53373	1109	37251	37312	58604	58604					0.06342844237792633
NEVLPGAKLD	10	Unmodified	_NEVLPGAKLD_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2914428710938	2	528.290214	1054.56587	-0.41626	-0.00021991	-0.145	-7.6604E-05	-0.56127	-0.00029651	528.2901894371032	54.86	1.3726	54.71	54.375	55.747	-0.15036					75	32	3	0	0	0	0.65479	1	5980	5980		70.816	6.6089	1	10567000			53374	143	37252	37313	58605	58605					0.040774217520947786
NEVNNWQT	8	Unmodified	_NEVNNWQT_					0	0	0			REV__ENSG00000177707|ENST00000485303|NECTIN3	REV__ENSG00000177707|ENST00000485303|NECTIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.79522705078125	2	502.725238	1003.43592	-0.14887	-7.4843E-05	4.1684	0.0020956	4.0196	0.0020207	502.7273438321296	52.707	0.63929	52.58	52.234	52.874	-0.12705					22	15	2	0	0	0	0.027866	1	5476	5476		10.265	0	1	138260	+		53375	27142	37253	37314	58606	58606					-0.06565754527059653
NEVNSHREQII	11	Unmodified	_NEVNSHREQII_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.896484375	3	446.896869	1337.66878	-0.37298	-0.00016668	-0.89245	-0.00039883	-1.2654	-0.00056552	446.8964812742649	24.189	1.0107	24.189	23.908	24.919	0					60	22	4	0	0	0	1.0215	1	1026	1026		32.034	2.4834	1	3471900			53376	6240	37254	37315	58607	58607					0.013448824727674946
NEVPKVTK	8	Unmodified	_NEVPKVTK_					0	0	0			REV__nc|ENSG00000273611|Q15649-2|ZNHIT3	REV__nc|ENSG00000273611|Q15649-2|ZNHIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.8633117675781	2	457.768917	913.523281	-0.42968	-0.00019669	-3.0891	-0.0014141	-3.5188	-0.0016108	457.7695080941415	38.319	0.16854	38.101	38.049	38.218	-0.21848					5	4	2	0	0	0	0.027866	1	3133	3133		30.318	0	1	68475	+		53377	29175	37255	37316	58608	58608					0.06306071414519465
NEVPKVTK	8	Unmodified	_NEVPKVTK_					0	0	0			REV__nc|ENSG00000273611|Q15649-2|ZNHIT3	REV__nc|ENSG00000273611|Q15649-2|ZNHIT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.768917	913.523281	-0.46278	-0.00021185	-0.63189	-0.00028926	-1.0947	-0.00050111	457.7683366038099	38.429	0.74384	38.347	38.116	38.86	-0.082512	0.12287	0.0019302	NaN	30.318	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151210	+		53378	29175	37255	37316							0.06306071414519465
NEVRVLRLCT	10	Unmodified	_NEVRVLRLCT_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.87567138671875	3	401.560652	1201.66013	0.44399	0.00017829	-3.5597	-0.0014294	-3.1157	-0.0012511	401.5592261598346	37.824	0.78564	37.644	37.09	37.876	-0.17929					32	20	4	0	0	0	0.03519	1	3025	3025		11.932	0	1	473310			53379	1686;4257	37256	37317	58609	58609					0.06736237302584414
NEVRYELES	9	Unmodified	_NEVRYELES_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7972412109375	2	569.772385	1137.53022	-0.80262	-0.00045731	-0.53382	-0.00030416	-1.3364	-0.00076146	569.7723664404356	44.384	0.59336	44.279	43.996	44.589	-0.10468					30	15	3	0	0	0	0.024523	1	4181	4181		15.642	0	1	964680			53380	3472	37257	37318	58610	58610					-0.03304660495587086
NEVRYELES	9	Unmodified	_NEVRYELES_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.772385	1137.53022	-1.7112	-0.00097498	1.5329	0.00087338	-0.17832	-0.0001016	569.7730895769639	44.163	1.47	44.163	43.872	45.342	0	-0.090134	0.00065275	NaN	15.642	91	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2308800			53381	3472	37257	37318							-0.03304660495587086
NEVRYELES	9	Unmodified	_NEVRYELES_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.772385	1137.53022	-1.2517	-0.00071316	1.1186	0.00063736	-0.13303	-7.5798E-05	569.7729208644882	44.317	1.2689	44.172	43.883	45.152	-0.14471	-0.081234	0.00018072	NaN	15.642	72	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2319300			53382	3472	37257	37318							-0.03304660495587086
NEVRYELES	9	Unmodified	_NEVRYELES_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.772385	1137.53022	-1.045	-0.00059542	0.86746	0.00049425	-0.17755	-0.00010116	569.7727910732308	44.215	1.2744	44.252	43.998	45.272	0.0369	-0.0012178	-0.0001055	NaN	15.642	76	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2357300			53383	3472	37257	37318							-0.03304660495587086
NEVRYELES	9	Unmodified	_NEVRYELES_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	569.772385	1137.53022	-0.97146	-0.00055351	-0.33847	-0.00019285	-1.3099	-0.00074636	569.7725059854071	44.552	0.52053	44.339	44.115	44.636	-0.21209	0.086291	-0.0014797	NaN	15.642	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1143700			53384	3472	37257	37318							-0.03304660495587086
NEVSHWGV	8	Unmodified	_NEVSHWGV_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	2	464.219591	926.42463	-0.33941	-0.00015756	-3.636	-0.0016879	-3.9754	-0.0018455	464.21878238404935	51.501	0.62874	51.588	51.189	51.818	0.087009					33	17	3	0	0	0	0.027866	1	5374	5374		31.955	13.63	1	297820	+		53385	36865	37258	37319	58611	58611					-0.04152531830516182
NEVTLGQDTAD	11	Unmodified	_NEVTLGQDTAD_					0	0	0		DACH2|p.N348Kfs*103|1|0.38|ENSG00000126733|chrX:86714657-86714658|-/A|frameshift_variant	DACH2|p.N348Kfs*103|1|0.38|ENSG00000126733|chrX:86714657-86714658|-/A|frameshift_variant	DACH2|p.N348Kfs*103|1|0.38|ENSG00000126733|chrX:86714657-86714658|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.7798461914062	2	581.764757	1161.51496	-1.2678	-0.00073755	-2.9909	-0.00174	-4.2586	-0.0024775	581.7637909149194	45.044	0.23644	44.792	44.59	44.826	-0.25252					7	5	2	0	0	0	0.02475	1	4215	4215		28.081	0	1	42841			53386	620	37259	37320	58612	58612					-0.05933572083404215
NEVTYALW	8	Unmodified	_NEVTYALW_					0	0	0		ENST00000474352.5_1_1:151338696-151341653:-|nuORF	ENST00000474352.5_1_1:151338696-151341653:-|nuORF	ENST00000474352.5_1_1:151338696-151341653:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.79296875	2	498.245275	994.475997	1.1084	0.00055227	-1.896	-0.00094468	-0.78758	-0.00039241	498.2441767608078	20.452	0.83677	20.521	20.267	21.103	0.068901					25	16	2	0	0	0	0.027866	1	536	536		31.955	18.996	1	54910			53387	15030	37260	37321	58613	58613					-0.021462078564923104
NEVTYALW	8	Unmodified	_NEVTYALW_					0	0	0		ENST00000474352.5_1_1:151338696-151341653:-|nuORF	ENST00000474352.5_1_1:151338696-151341653:-|nuORF	ENST00000474352.5_1_1:151338696-151341653:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.245275	994.475997	-0.8117	-0.00040443	-0.71865	-0.00035807	-1.5304	-0.00076249	498.24471169813006	20.493	0.43273	20.493	20.176	20.609	0	-0.01404	0.0010124	NaN	29.15	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23669			53388	15030	37260	37321							-0.021462078564923104
NEVVVLIVV	9	Unmodified	_NEVVVLIVV_					0	0	0		nc|ENSG00000284609|Q8NGG8|OR8B3;nc|ENSG00000284680|Q96RD0|OR8B2	nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284609|Q8NGG8|OR8B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.78155517578125	2	492.310418	982.606283	-0.38996	-0.00019198	-2.874	-0.0014149	-3.2639	-0.0016069	492.3088215712711	32.299	0.87685	32.362	32.085	32.962	0.062885					47	22	3	0	0	0	0.024374	1	2251	2251		40.778	18.818	1	746880			53389	18808	37261	37322	58614	58614					0.11428388142530821
NEVYNRVT	8	Unmodified	_NEVYNRVT_					0	0	0			REV__MAPK9|p.Q253K|1|0.09|ENSG00000050748|chr5:180242687-180242687|G/T|missense_variant	REV__MAPK9|p.Q253K|1|0.09|ENSG00000050748|chr5:180242687-180242687|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2685241699219	2	497.751256	993.487959	-0.40189	-0.00020004	0.55517	0.00027634	0.15328	7.6297E-05	497.7518638401782	35.323	0.86148	35.323	34.826	35.687	0					39	22	3	0	0	0	0.027866	1	2759	2759		40.778	0	1	279560	+		53390	20164	37262	37323	58615	58615					-0.00904591113294373
NEWFNEEMP	9	Unmodified	_NEWFNEEMP_					0	0	0			REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF	REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.264404296875	2	598.239864	1194.46517	-1.1605	-0.00069428	3.4552	0.002067	2.2947	0.0013728	598.2418622179374	43.549	1.079	43.311	42.679	43.758	-0.23737					50	28	2	0	0	0	0.024436	1	3912	3912		38.806	9.6566	1	322880	+		53391	35377	37263	37324	58616	58616					-0.12427978293067099
NEWLWDHYKNL	11	Unmodified	_NEWLWDHYKNL_					0	0	0			REV__ENSG00000129071|ENST00000429544|MBD4	REV__ENSG00000129071|ENST00000429544|MBD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.2585144042969	3	506.577247	1516.70991	0.47136	0.00023878	-1.163	-0.00058916	-0.69166	-0.00035038	506.5767258241179	41.011	0.46646	40.887	40.584	41.051	-0.12317					16	12	2	0	0	0	0.024801	1	3659	3659		8.7993	0	1	95188	+		53392	23030	37264	37325	58617	58617					-0.02777356487763427
NEWYDFYLISQ	11	Unmodified	_NEWYDFYLISQ_					0	0	0		ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7850341796875	3	493.225992	1476.65615	-0.6729	-0.00033189	-4.4897	-0.0022144	-5.1626	-0.0025463	493.558944431943	27.882	0.79427	27.637	27.246	28.041	-0.24524					49	18	4	0	0	0	0.024723	1	1528	1528		25.068	7.2346	1	617120			53393	4814	37265	37326	58618	58618					-0.0631157371012705
NEYDAFKTD	9	Unmodified	_NEYDAFKTD_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.7484130859375	2	551.738011	1101.46147	0.39588	0.00021842	0.46751	0.00025794	0.86339	0.00047637	551.7384030642535	58.384	0.21442	58.142	58.044	58.258	-0.24166					5	4	2	0	0	0	0.024477	1	6396	6396		14.865	0	1	56420	+		53394	22489	37266	37327	58619	58619					-0.08520324795290435
NEYEFHVM	8	Unmodified	_NEYEFHVM_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.7770385742188	2	534.726392	1067.43823	-0.60089	-0.00032131	1.6624	0.00088895	1.0616	0.00056764	534.7269402759642	46.367	0.20033	46.418	46.308	46.509	0.051395					9	5	2	0	0	0	0.027866	1	4504	4504		17.365	0	1	52736			53395	6479	37267	37328	58620	58620					-0.09279042113598734
NEYELYRF	8	Unmodified	_NEYELYRF_					0	0	0			REV__ENSG00000149050|ENST00000278314|ZNF214	REV__ENSG00000149050|ENST00000278314|ZNF214	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.7803955078125	2	567.266739	1132.51892	-0.59368	-0.00033678	3.8314	0.0021734	3.2377	0.0018366	567.2690486863903	57.416	0.75769	57.249	56.967	57.725	-0.1672					31	19	2	0	0	0	0.027866	1	6234	6234		29.15	0	1	315080	+		53396	24650	37268	37329	58621	58621					-0.042034377990376015
NEYLALDK	8	Unmodified	_NEYLALDK_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2772521972656	2	483.250557	964.486562	-0.48446	-0.00023411	-3.4389	-0.0016619	-3.9234	-0.001896	483.2487600468145	24.763	0.53372	24.763	24.518	25.052	0					28	11	3	0	0	0	0.027866	1	1095	1095		44.117	13.613	1	371640	+		53397	26598	37269	37330	58622	58622					0.002897747979432097
NEYLFLTDV	9	Unmodified	_NEYLFLTDV_					0	0	0			REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.3262939453125	2	557.276772	1112.53899	0.90343	0.00050346	0.62126	0.00034621	1.5247	0.00084967	557.2767239538156	59.063	1.6142	59.063	58.679	60.294	0					76	43	3	0	0	0	0.024527	1	6887	6887		24.519	8.046	1	548250	+		53398	22247	37270	37331	58623	58623					-0.012776868591117818
NEYLFLTDV	9	Unmodified	_NEYLFLTDV_					0	0	0			REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.276772	1112.53899	1.1889	0.00066257	0.68011	0.00037901	1.8691	0.0010416	557.2766750813628	59.276	1.1573	59.089	58.721	59.879	-0.18705	0.063263	-0.00085501	NaN	24.519	62	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548760	+		53399	22247	37270	37331							-0.012776868591117818
NEYLFLTDV	9	Unmodified	_NEYLFLTDV_					0	0	0			REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.276772	1112.53899	0.26526	0.00014783	2.2176	0.0012358	2.4828	0.0013836	557.277901063614	59.202	0.91981	59.014	58.74	59.66	-0.18795	-0.012225	0.00085859	NaN	24.519	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312110	+		53400	22247	37270	37331							-0.012776868591117818
NEYLFLTDV	9	Unmodified	_NEYLFLTDV_					0	0	0			REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.276772	1112.53899	0.43906	0.00024468	2.0832	0.0011609	2.5223	0.0014056	557.2777117103517	59.192	1.1394	59.01	58.669	59.808	-0.18134	-0.015812	0.00070885	NaN	24.519	48	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402420	+		53401	22247	37270	37331							-0.012776868591117818
NEYLFLTDV	9	Unmodified	_NEYLFLTDV_					0	0	0			REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	REV__TRAK2|p.L137Kfs*8|1|0.3|ENSG00000115993|chr2:201399447-201399448|AA/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.276772	1112.53899	0.18706	0.00010424	2.2493	0.0012535	2.4363	0.0013577	557.2779099509394	59.256	0.95425	59.014	58.738	59.692	-0.24166	-0.011734	0.00089392	NaN	24.519	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287990	+		53402	22247	37270	37331							-0.012776868591117818
NEYLNLSL	8	Unmodified	_NEYLNLSL_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.77899169921875	2	483.250557	964.486562	-0.88431	-0.00042734	0.59362	0.00028687	-0.29069	-0.00014047	483.25063869647016	62.358	0.49989	62.181	61.843	62.343	-0.17781					26	12	3	0	0	0	0.027866	1	6978	6978		44.117	8.4985	1	548140	+		53403	21664	37271	37332	58624	58624					0.002897747979545784
NEYLRVKTVT	10	Unmodified	_NEYLRVKTVT_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-2|ALDH1L1;ENST00000467370.5_1_3:125822636-125822705:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	408.7324523925781	3	408.231189	1221.67174	0.22882	9.3413E-05	3.4181	0.0013954	3.6469	0.0014888	408.23238419005844	30.015	1.036	30.092	29.8	30.836	0.076099					50	24	3	0	0	0	0.03519	1	1937	1937		22.562	0	1	728950			53404	5782	37272	37333	58625	58625					0.06976757597567484
NEYTAISYYH	10	Unmodified	_NEYTAISYYH_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.7508239746094	3	420.855899	1259.54587	-0.058636	-2.4677E-05	1.544	0.00064979	1.4853	0.00062511	420.8562255358218	41.672	0.62044	41.549	41.267	41.888	-0.12299					36	16	3	0	0	0	0.03519	1	3746	3746		40.058	7.3076	1	330350			53405	1818	37273	37334	58626	58626					-0.07352373978528703
NFCRPITSL	9	Unmodified	_NFCRPITSL_					0	0	0		ENST00000277865.4_1_10:88811263-88811500:-|nuORF	ENST00000277865.4_1_10:88811263-88811500:-|nuORF	ENST00000277865.4_1_10:88811263-88811500:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3037719726562	2	525.773677	1049.5328	-0.14975	-7.8735E-05	4.3595	0.0022921	4.2098	0.0022134	525.7774270362132	63.762	0.21614	63.511	63.408	63.624	-0.25141					7	5	2	0	0	0	0.023473	1	7443	7443		95.815	21.56	1	52251			53406	11697	37274	37335	58627	58627					0.010015164283913691
NFDNNIKVQ	9	Unmodified	_NFDNNIKVQ_					0	0	0			REV__ENSG00000112936|ENST00000313164|C7	REV__ENSG00000112936|ENST00000313164|C7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3016967773438	2	546.277638	1090.54072	-0.7859	-0.00042932	3.8078	0.0020801	3.0219	0.0016508	546.2797146338411	63.217	0.42886	63.217	63.018	63.447	0					17	10	2	0	0	0	0.024021	1	7403	7403		49.442	5.0644	1	196900	+	+	53407	19573	37275	37336	58628	58628					-0.0009263305048534676
NFDPLEFLE	9	Unmodified	_NFDPLEFLE_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.2792358398438	2	562.268947	1122.52334	-0.67955	-0.00038209	3.6648	0.0020606	2.9853	0.0016785	562.2709252878849	84.63	0.49878	84.656	84.248	84.747	0.025528					19	11	2	0	0	0	0.024487	1	10530	10530		31.955	5.2619	1	836270			53408	9491	37276	37337	58629	58629					-0.033019733761420866
NFETVQVK	8	Unmodified	_NFETVQVK_					0	0	0			REV__ENST00000485192.1_1_6:138196977-138197082:+|nuORF	REV__ENST00000485192.1_1_6:138196977-138197082:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7696533203125	2	482.758549	963.502546	-0.79281	-0.00038274	0.56858	0.00027449	-0.22423	-0.00010825	482.7584169444163	44.549	0.40431	44.336	44.148	44.553	-0.21276					16	10	2	0	0	0	0.027866	1	4133	4133		30.318	16.181	1	147130	+		53409	33557	37277	37338	58630	58630					0.019334810348595965
NFEVIKFNI	9	Unmodified	_NFEVIKFNI_					0	0	0			REV__ENSG00000120820|ENST00000360814|GLT8D2	REV__ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3109741210938	2	562.310949	1122.60735	0.14969	8.4173E-05	-0.21723	-0.00012215	-0.067535	-3.7976E-05	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.17822	1	11017	11017		93.195	2.8256	1	3232300	+		53410	22563	37278	37339	58631	58631					0.05094602511417179
NFEVIKFNI	9	Unmodified	_NFEVIKFNI_					0	0	0			REV__ENSG00000120820|ENST00000360814|GLT8D2	REV__ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3110961914062	2	562.310949	1122.60735	0.47833	0.00026897	-0.52432	-0.00029483	-0.045989	-2.586E-05	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.17822	1	10938	10938		93.195	8.0346	1	3090500	+		53411	22563	37278	37339	58632	58632					0.05094602511417179
NFFPALVTFM	10	Unmodified	_NFFPALVTFM_					0	0	0			REV__ENSG00000203757|ENST00000368145|OR6K3	REV__ENSG00000203757|ENST00000368145|OR6K3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8018188476562	2	593.801903	1185.58925	-0.75176	-0.0004464	0.10167	6.0371E-05	-0.65009	-0.00038602	593.8020284979149	35.892	2.8005	35.675	35.391	38.191	-0.21661					234	75	6	0	0	0	0.96965	1	2735	2735		49.442	0.84	1	98136000	+		53412	28544	37279	37340	58633	58633					0.0038814426504814037
NFFSTALGQI	10	Unmodified	_NFFSTALGQI_					0	0	0			REV__ENST00000418231.2_1_X:73350641-73351442:+|nuORF	REV__ENST00000418231.2_1_X:73350641-73351442:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.8554077148438	2	549.284931	1096.55531	-0.062327	-3.4235E-05	-0.15189	-8.3429E-05	-0.21421	-0.00011766	549.7859934696163	79.759	0.37836	79.609	79.487	79.866	-0.15051					14	8	2	0	0	0	0.03519	1	9560	9560		51.193	3.5354	1	66663	+		53413	32112	37280	37341	58634	58634					0.010894390976545765
NFGAHQRT	8	Unmodified	_NFGAHQRT_					0	0	0		nc|ENSG00000164011|Q5VV52-3|ZNF691;ENSG00000164011|ENST00000651192|ZNF691	nc|ENSG00000164011|Q5VV52-3|ZNF691	nc|ENSG00000164011|Q5VV52-3|ZNF691	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2295837402344	2	465.730658	929.446762	0.060883	2.8355E-05	0.10258	4.7773E-05	0.16346	7.6128E-05	465.7304896446496	110.56	0.32075	110.43	110.22	110.54	-0.12525					12	9	2	0	0	0	1.0574	1	13573	13573		13.775	0	1	18192			53414	7189	37281	37342	58635	58635					-0.0207830736210326
NFGNIWVQ	8	Unmodified	_NFGNIWVQ_					0	0	0			REV__nc|ENSG00000170266|P16278-2|GLB1;REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.7767333984375	2	489.245609	976.476666	-0.56421	-0.00027604	2.5853	0.0012649	2.0211	0.00098882	489.24573467548163	28.732	0.33767	28.728	28.582	28.92	-0.0042019					13	7	3	0	0	0	0.027866	1	1669	1669		50.025	18.07	1	33237	+		53415	26451;25583	37282	37343	58636	58636					-0.012513684167743122
NFHGKKLKLGP	11	Unmodified	_NFHGKKLKLGP_					0	0	0		ENSG00000092345|ENST00000399444|DAZL;nc|ENSG00000092345|Q92904-2|DAZL	ENSG00000092345|ENST00000399444|DAZL	ENSG00000092345|ENST00000399444|DAZL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8693237304688	2	619.87204	1237.72953	-1.0156	-0.00062956	-3.2113	-0.0019906	-4.2269	-0.0026202	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.0119	1	12067	12067		34.173	9.0466	1	4459000			53416	1989	37283	37344	58637	58637					0.12017064313636183
NFHRNISN	8	Unmodified	_NFHRNISN_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.24932861328125	2	501.249215	1000.48388	-0.045881	-2.2998E-05	-1.2427	-0.00062291	-1.2886	-0.00064591	501.2485766471276	104.85	0.58165	104.85	104.54	105.13	0.00096893					47	18	3	0	0	0	1.0106	1	13447	13447		35.618	4.0885	1	312450	+		53417	28058	37284	37345	58638	58638					-0.016346358163445984
NFIITIALAV	10	Unmodified	_NFIITIALAV_					0	0	0			REV__KCNS3|p.P401A|1|0.27|ENSG00000170745|chr2:17932209-17932209|C/G|missense_variant	REV__KCNS3|p.P401A|1|0.27|ENSG00000170745|chr2:17932209-17932209|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7970581054688	2	537.831517	1073.64848	-1.0063	-0.00054122	-2.262	-0.0012166	-3.2683	-0.0017578	538.3298684305763	77.877	0.28931	77.893	77.658	77.948	0.015907					8	6	2	0	0	0	0.03519	1	9535	9535		27.882	0	1	48589	+		53418	36175	37285	37346	58639	58639					0.11460363550872898
NFIKLLEVGHL	11	Unmodified	_NFIKLLEVGHL_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8825073242188	2	641.87953	1281.74451	1.496	0.00096027	2.9831	0.0019148	4.4792	0.0028751	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	1.0238	1	12292	12292		31.53	4.8369	1	2979200	+		53419	20933	37286	37347	58640	58640					0.11490511390979918
NFIPEQFLD	9	Unmodified	_NFIPEQFLD_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.7784423828125	2	561.776939	1121.53933	-1.1108	-0.00062401	4.0689	0.0022858	2.9581	0.0016618	561.7792002432449	83.816	0.77736	83.726	83.469	84.246	-0.090454					40	17	3	0	0	0	0.45795	1	10465	10465		62.107	5.3864	1	755420			53420	958	37287	37348	58641	58641					-0.016582671392370685
NFIPEQFLD	9	Unmodified	_NFIPEQFLD_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	561.776939	1121.53933	0.5378	0.00030213	2.4309	0.0013656	2.9687	0.0016677	561.7786170444965	83.901	0.89458	83.69	83.135	84.029	-0.21158	-0.032357	-0.0016016	NaN	62.107	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139220			53421	958	37287	37348							-0.016582671392370685
NFIPEQFLD	9	Unmodified	_NFIPEQFLD_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.776939	1121.53933	0.58315	0.0003276	1.6762	0.00094163	2.2593	0.0012692	561.7784674977722	83.824	0.64497	83.655	83.451	84.096	-0.16916	-0.066791	-0.0024496	NaN	62.107	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124220			53422	958	37287	37348							-0.016582671392370685
NFIPEQFLD	9	Unmodified	_NFIPEQFLD_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	561.776939	1121.53933	0.11466	6.4411E-05	2.2882	0.0012855	2.4029	0.0013499	561.7786557653371	83.814	0.72308	83.675	83.34	84.063	-0.1386	-0.046767	-0.0017619	NaN	62.107	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174030			53423	958	37287	37348							-0.016582671392370685
NFIYAQLVSV	10	Unmodified	_NFIYAQLVSV_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.29833984375	2	577.316232	1152.61791	-0.49336	-0.00028482	2.8525	0.0016468	2.3592	0.001362	577.3180692743915	92.724	0.49894	92.602	92.341	92.84	-0.12242					17	11	2	0	0	0	0.03519	1	11385	11385		30.318	3.5216	1	68171	+		53424	25493	37288	37349	58642	58642					0.047705851658292886
NFKDITDLI	9	Unmodified	_NFKDITDLI_					0	0	0		ENSG00000134243|ENST00000256637|SORT1;nc|ENSG00000134243|Q99523-2|SORT1	ENSG00000134243|ENST00000256637|SORT1	ENSG00000134243|ENST00000256637|SORT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2769165039062	2	539.792589	1077.57063	-0.24377	-0.00013158	-1.1431	-0.00061706	-1.3869	-0.00074864	540.2943789712378	61.233	0.45567	61.233	60.958	61.414	0					21	11	3	0	0	0	0.024397	1	7043	7043		39.253	0	1	265990			53425	4768	37289	37350	58643	58643					0.03494305894855643
NFKIGSLLGL	10	Unmodified	_NFKIGSLLGL_					0	0	0		ENSG00000171495|ENST00000399564|MROH2B;nc|ENSG00000171495|Q7Z745-2|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	ENSG00000171495|ENST00000399564|MROH2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.3192138671875	2	531.321317	1060.62808	-1.1987	-0.0006369	-2.8414	-0.0015097	-4.0401	-0.0021466	531.3196752837498	93.75	1.1088	93.61	93.223	94.331	-0.13995					100	25	5	0	0	0	1.1088	1	11516	11516		31.53	1.0262	1	3682600			53426	8160	37290	37351	58644	58644					0.10019192891104467
NFKNNNSKW	9	Unmodified	_NFKNNNSKW_					0	0	0		ENST00000533453.5_1_6:117860476-117860575:+|nuORF;ENST00000534777.5_1_6:117860476-117866721:+|nuORF;nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1	ENST00000533453.5_1_6:117860476-117860575:+|nuORF	ENST00000533453.5_1_6:117860476-117860575:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.7984619140625	2	576.283254	1150.55196	-0.71094	-0.0004097	-2.2233	-0.0012812	-2.9342	-0.0016909	576.2821422863746	60.398	0.42667	60.144	59.868	60.294	-0.25373					12	10	2	0	0	0	0.024487	1	6717	6717		40.573	7.7602	1	67740			53427	7282	37291	37352	58645	58645					-0.01729810956339861
NFKVSLKV	8	Unmodified	_NFKVSLKV_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.73138427734375	2	467.789653	933.564752	0.12653	5.919E-05	-0.28693	-0.00013422	-0.1604	-7.5034E-05	467.7896087980122	60.329	0.50675	60.131	59.838	60.345	-0.19742					17	12	2	0	0	0	0.027866	1	6728	6728		38.806	22.333	1	122610	+		53428	27880	37292	37353	58646	58646					0.09531252173849225
NFLARLIKN	9	Unmodified	_NFLARLIKN_					0	0	0			REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.30078125	2	544.832383	1087.65021	-0.69247	-0.00037728	1.4896	0.0008116	0.79715	0.00043431	544.8330935143244	50.501	0.30305	50.351	50.225	50.528	-0.14916					10	8	2	0	0	0	0.024381	1	5265	5265		29.15	0	1	53809	+		53429	33532	37293	37354	58647	58647					0.10989417359519393
NFLHEIHDP	9	Unmodified	_NFLHEIHDP_					0	0	0		ENSG00000122482|ENST00000337393|ZNF644;nc|ENSG00000122482|Q9H582-2|ZNF644;ZNF644|p.E1086Vfs*2|1|0.22|ENSG00000122482|chr1:90937909-90937916|TTTTTCTT/-|frameshift_variant	ENSG00000122482|ENST00000337393|ZNF644	ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.8295288085938	2	561.272355	1120.53016	0.34063	0.00019119	-3.7908	-0.0021276	-3.4501	-0.0019365	561.2699322631469	72.149	1.0026	71.887	71.638	72.641	-0.26199					60	23	4	0	0	0	0.024487	1	8468	8468		17.365	3.9109	1	403030			53430	3925	37294	37355	58648	58648					-0.025286157049322355
NFLITSRLE	9	Unmodified	_NFLITSRLE_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.287109375	2	546.806031	1091.59751	0.52527	0.00028722	-1.1879	-0.00064957	-0.66268	-0.00036236	546.8053242696199	84.216	0.52074	84.057	83.801	84.321	-0.15869					29	11	4	0	0	0	0.0242	1	10188	10188		79.713	12.219	1	120600	+		53431	21179	37295	37356	58649	58649					0.05537414506011373
NFLKAQQV	8	Unmodified	_NFLKAQQV_					0	0	0		ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.2707824707031	2	474.269084	946.523616	4.2927	0.0020359	-0.68438	-0.00032458	3.6083	0.0017113	474.2686729374976	17.485	0.44611	17.485	17.3	17.746	0					21	8	4	0	0	0	1.0574	1	182	182		26.796	0	1	136450			53432	5578	37296	37357	58650	58650					0.04821491134373446
NFLKQDSV	8	Unmodified	_NFLKQDSV_					0	0	0		nc|ENSG00000144395|Q8NCX0-2|CCDC150	nc|ENSG00000144395|Q8NCX0-2|CCDC150	nc|ENSG00000144395|Q8NCX0-2|CCDC150	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7509765625	2	475.750724	949.486896	0.087077	4.1427E-05	-0.019222	-9.1449E-06	0.067854	3.2282E-05	475.75054782568486	31.895	0.8963	31.71	31.36	32.257	-0.18503					45	20	4	0	0	0	0.6536	1	2172	2172		71.296	13.066	1	1754900			53433	18356	37297	37358	58651	58651					0.010131945178045498
NFLKYMSY	8	Unmodified	_NFLKYMSY_					0	0	0			REV__ENST00000411858.1_1_7:6854458-6863725:-|nuORF	REV__ENST00000411858.1_1_7:6854458-6863725:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2884521484375	2	533.257328	1064.5001	-0.50815	-0.00027097	1.3716	0.00073143	0.86348	0.00046046	533.7599147300951	25.527	0.37906	25.356	25.2	25.579	-0.17151					10	8	2	0	0	0	0.027866	1	1174	1174		33.516	13.519	1	34490	+		53434	22657	37298	37359	58652	58652					-0.029566906944637594
NFLLYAPLE	9	Unmodified	_NFLLYAPLE_					0	0	0		PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant;ENSG00000137338|ENST00000682144|PGBD1	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2587890625	2	540.292225	1078.5699	-0.66331	-0.00035838	-3.3656	-0.0018184	-4.0289	-0.0021768	540.2904146390704	76.334	0.52803	76.334	76.15	76.678	0					26	12	3	0	0	0	0.024374	1	9421	9421		49.442	3.4896	1	229180			53435	5115	37299	37360	58653	58653					0.033755112457811265
NFLLYAPLE	9	Unmodified	_NFLLYAPLE_					0	0	0		PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant;ENSG00000137338|ENST00000682144|PGBD1	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.292225	1078.5699	-0.96584	-0.00052184	-3.234	-0.0017473	-4.1998	-0.0022691	540.2906095092144	76.526	0.56903	76.298	76.081	76.65	-0.22843	-0.12419	-0.00022786	NaN	56.721	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213180			53436	5115	37299	37360							0.033755112457811265
NFLLYAPLE	9	Unmodified	_NFLLYAPLE_					0	0	0		PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant;ENSG00000137338|ENST00000682144|PGBD1	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.292225	1078.5699	-0.41443	-0.00022391	-4.8738	-0.0026333	-5.2882	-0.0028572	540.2893662956141	76.329	0.52802	76.34	76.166	76.694	0.011635	-0.081375	-0.0019998	NaN	56.721	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313830			53437	5115	37299	37360							0.033755112457811265
NFLLYAPLE	9	Unmodified	_NFLLYAPLE_					0	0	0		PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant;ENSG00000137338|ENST00000682144|PGBD1	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.292225	1078.5699	0.17118	9.2486E-05	3.7949	0.0020503	3.9661	0.0021428	540.293958015466	76.967	0.21172	76.715	76.571	76.782	-0.25162	0.29326	0.0073674	NaN	56.721	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27912			53438	5115	37299	37360							0.033755112457811265
NFLPHILDL	9	Unmodified	_NFLPHILDL_					0	0	0			REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3033447265625	2	541.305667	1080.59678	-0.61107	-0.00033078	-4.006	-0.0021684	-4.617	-0.0024992	541.3033960954899	47.128	1.086	47.128	46.852	47.938	0					93	31	5	0	0	0	0.62163	2	4699	4687;4699		51.335	1.7054	1	12844000	+		53439	35714	37300	37361	58654;58655	58655					0.059706198569983826
NFMILFVM	8	Unmodified	_NFMILFVM_					0	0	0			REV__ENSG00000196600|ENST00000306494|SLC22A25	REV__ENSG00000196600|ENST00000306494|SLC22A25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.82373046875	2	507.761192	1013.50783	-0.64715	-0.0003286	-3.4807	-0.0017674	-4.1278	-0.0020959	507.75926661255016	81.327	0.53126	81.327	81.057	81.589	0					18	12	2	0	0	0	0.027866	1	10152	10152		39.021	21.657	1	100060	+		53440	28203	37301	37362	58656	58656					0.0016174530147736732
NFMILFVM	8	Unmodified	_NFMILFVM_					0	0	0			REV__ENSG00000196600|ENST00000306494|SLC22A25	REV__ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.761192	1013.50783	0.27939	0.00014186	-3.4141	-0.0017336	-3.1348	-0.0015917	508.2615846401692	81.519	0.45732	81.29	81.022	81.479	-0.2289	-0.047951	-0.00067057	NaN	29.842	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47537	+		53441	28203	37301	37362							0.0016174530147736732
NFMILFVM	8	Unmodified	_NFMILFVM_					0	0	0			REV__ENSG00000196600|ENST00000306494|SLC22A25	REV__ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.761192	1013.50783	0.091468	4.6444E-05	-2.7125	-0.0013773	-2.621	-0.0013308	507.75980122855964	81.509	0.4584	81.316	81.09	81.548	-0.19334	-0.022671	4.1996E-05	NaN	29.842	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44243	+		53442	28203	37301	37362							0.0016174530147736732
NFMILFVM	8	Unmodified	_NFMILFVM_					0	0	0			REV__ENSG00000196600|ENST00000306494|SLC22A25	REV__ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.761192	1013.50783	-0.62932	-0.00031955	-2.4481	-0.0012431	-3.0774	-0.0015626	507.7596318983734	81.502	0.33245	81.36	81.151	81.483	-0.14249	0.021373	0.00031045	NaN	29.842	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36689	+		53443	28203	37301	37362							0.0016174530147736732
NFNLKKEEI	9	Unmodified	_NFNLKKEEI_					0	0	0			REV__CON__Q3MHN2	REV__CON__Q3MHN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8109741210938	2	567.811313	1133.60807	-0.57211	-0.00032485	0.66305	0.00037649	0.090943	5.1639E-05	567.8115204773222	69.52	1.6187	69.253	68.502	70.121	-0.26724					77	34	4	0	0	0	0.26966	1	8067	8067		79.713	4.6693	1	2508700	+	+	53444	19585	37302	37363	58657	58657					0.04661397160452907
NFPRTPQPT	9	Unmodified	_NFPRTPQPT_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8162841796875	2	529.274898	1056.53524	-0.19894	-0.00010529	3.9045	0.0020665	3.7055	0.0019612	529.276968248461	71.536	0.52097	71.274	71.117	71.638	-0.26199					22	12	2	0	0	0	0.024477	1	8342	8342		27.882	0	1	213370	+		53445	23654	37303	37364	58658	58658					0.009236881576953238
NFQEGGHL	8	Unmodified	_NFQEGGHL_					0	0	0		PRUNE2|p.Q2062H|1|0.24|ENSG00000106772|chr9:76706088-76706088|C/A|missense_variant	PRUNE2|p.Q2062H|1|0.24|ENSG00000106772|chr9:76706088-76706088|C/A|missense_variant	PRUNE2|p.Q2062H|1|0.24|ENSG00000106772|chr9:76706088-76706088|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2496032714844	2	451.211766	900.40898	-0.63981	-0.00028869	1.3523	0.00061019	0.71253	0.0003215	451.21211046353665	37.038	0.54863	36.818	36.488	37.037	-0.2195					22	13	3	0	0	0	0.027866	1	2953	2953		50.025	0	1	210870			53446	19000	37304	37365	58659	58659					-0.04520818347555178
NFQEGGHL	8	Unmodified	_NFQEGGHL_					0	0	0		PRUNE2|p.Q2062H|1|0.24|ENSG00000106772|chr9:76706088-76706088|C/A|missense_variant	PRUNE2|p.Q2062H|1|0.24|ENSG00000106772|chr9:76706088-76706088|C/A|missense_variant	PRUNE2|p.Q2062H|1|0.24|ENSG00000106772|chr9:76706088-76706088|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2493896484375	2	451.211766	900.40898	0.58473	0.00026384	-0.20165	-9.0986E-05	0.38308	0.00017285	451.2115168632339	37.035	0.5099	36.826	36.565	37.075	-0.2092					26	12	3	0	0	0	0.027866	1	2959	2959		71.378	43.496	1	247050			53447	19000	37304	37365	58660	58660					-0.04520818347555178
NFQKKKSP	8	Unmodified	_NFQKKKSP_					0	0	0			REV__ENSG00000203724|ENST00000367393|C1orf53	REV__ENSG00000203724|ENST00000367393|C1orf53	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.782470703125	2	488.782359	975.550165	-0.8946	-0.00043727	0.12686	6.2009E-05	-0.76774	-0.00037526	488.7823563953132	40.535	1.7231	40.558	39.807	41.53	0.023006					129	48	5	0	0	0	0.91239	1	3520	3520		50.025	0	1	11637000	+		53448	28540	37305	37366	58661	58661					0.06141180025713311
NFRCKPSFR	9	Unmodified	_NFRCKPSFR_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2999267578125	2	577.798017	1153.58148	-0.52243	-0.00030186	3.951	0.0022829	3.4285	0.001981	577.8001836307386	94.578	1.0258	94.44	94.172	95.198	-0.13779					30	23	2	0	0	0	0.024427	1	11680	11680		34.173	13.226	1	82917			53449	6062	37306	37367	58662	58662					0.010834297881501698
NFRFPADAE	9	Unmodified	_NFRFPADAE_					0	0	0		nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.281005859375	2	533.751256	1065.48796	-0.8272	-0.00044152	3.6636	0.0019555	2.8364	0.0015139	533.7524280268974	54.232	0.40839	54.096	53.99	54.399	-0.13617					18	11	2	0	0	0	0.024477	1	5744	5744		14.865	0	1	151830			53450	8492	37307	37368	58663	58663					-0.04216591113299728
NFRHNSAL	8	Unmodified	_NFRHNSAL_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2772521972656	2	479.746308	957.478063	-0.16918	-8.1165E-05	4.4578	0.0021386	4.2886	0.0020575	479.7483886648872	21.624	1.5334	21.534	20.863	22.396	-0.090094					44	31	2	0	0	0	0.027866	1	646	646		73.975	16.163	1	32768			53451	10523	37308	37369	58664	58664					-0.002377343280045352
NFSGPKNSF	9	Unmodified	_NFSGPKNSF_					0	0	0			REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.7430114746094	2	499.240524	996.466495	0.22386	0.00011176	-2.4774	-0.0012368	-2.2535	-0.001125	499.7429323906471	57	1.1443	56.798	56.404	57.549	-0.20208					79	30	6	0	0	0	0.42604	1	6184	6184		64.207	3.2353	1	8987400	+		53452	25787	37309	37370	58665	58665					-0.03187976141987292
NFSLFYST	8	Unmodified	_NFSLFYST_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.29083251953125	2	489.732	977.449448	-0.49553	-0.00024268	4.4499	0.0021792	3.9543	0.0019366	489.73382522931996	58.695	1.2172	58.507	58.007	59.224	-0.18795					52	29	2	0	0	0	0.027866	1	6435	6435		73.975	53.028	1	240770			53453	2409	37310	37371	58666	58666					-0.0401789674781412
NFSRYLSPEPW	11	Unmodified	_NFSRYLSPEPW_					0	0	0			REV__ENST00000317827.8_1_8:38709809-38709998:+|nuORF	REV__ENST00000317827.8_1_8:38709809-38709998:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.893310546875	3	465.894577	1394.6619	-0.26645	-0.00012414	-2.8431	-0.0013246	-3.1096	-0.0014487	465.8931650284093	30.079	1.1423	29.93	29.584	30.727	-0.14952					77	26	4	0	0	0	0.95911	1	1865	1865		45.908	8.3082	1	1939100	+		53454	30300	37311	37372	58667	58667					-0.019644304078383357
NFTPWRVL	8	Unmodified	_NFTPWRVL_					0	0	0		ENST00000445067.6_1_1:111743878-111768598:+|nuORF	ENST00000445067.6_1_1:111743878-111768598:+|nuORF	ENST00000445067.6_1_1:111743878-111768598:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8179931640625	2	516.784902	1031.55525	0.1329	6.8682E-05	0.23976	0.0001239	0.37266	0.00019258	516.7836707261476	21.467	0.82419	21.276	21.029	21.853	-0.19072					22	16	3	0	0	0	0.027866	1	679	679		57.811	4.4598	1	33980			53455	14434	37312	37373	58668	58668					0.040734838883281554
NFTVVVMMP	9	Unmodified	_NFTVVVMMP_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.787353515625	2	519.261556	1036.50856	-0.55328	-0.0002873	-0.93181	-0.00048385	-1.4851	-0.00077115	519.2601320864012	24.888	0.562	24.661	24.325	24.887	-0.22683					18	12	2	0	0	0	0.024381	1	1157	1157		29.15	0	1	151530			53456	4473	37313	37374	58669	58669					-0.008234600494915867
NFWASMDQN	9	Unmodified	_NFWASMDQN_					0	0	0			REV__ENSG00000163596|ENST00000358299|ICA1L	REV__ENSG00000163596|ENST00000358299|ICA1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.3273315429688	2	556.726923	1111.43929	-0.63585	-0.00035399	-3.8671	-0.0021529	-4.503	-0.0025069	556.724510015518	60.221	0.45277	60.021	59.795	60.248	-0.20016					21	11	2	0	0	0	0.024456	1	6890	6890		35.152	4.6484	1	234430	+		53457	25599	37314	37375	58670	58670					-0.11196827744697657
NFYEHRSV	8	Unmodified	_NFYEHRSV_					0	0	0			REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	REV__sp|P03193|PRIM_EBVB9DNAprimaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BSLF1PE=3SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2691040039062	2	526.251423	1050.48829	-0.36984	-0.00019463	-2.8943	-0.0015231	-3.2642	-0.0017178	526.7524095094985	66.411	0.22745	66.166	66.05	66.277	-0.24517					7	5	2	0	0	0	0.027866	1	7609	7609		68.787	29.534	1	35189	+		53458	37532	37315	37376	58671	58671					-0.03493171393438388
NFYFVDDIDD	10	Unmodified	_NFYFVDDIDD_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.81842041015625	3	421.511909	1261.5139	-0.58914	-0.00024833	1.3456	0.00056718	0.75645	0.00031885	421.84712564243614	28.153	0.85284	27.984	27.528	28.38	-0.16897					27	20	2	0	0	0	0.03519	1	1600	1600		16.53	0	1	56887			53459	3974	37316	37377	58672	58672					-0.1063978645233874
NGAAAGGG	8	Unmodified	_NGAAAGGG_					0	0	0			REV__ENSG00000176887|ENST00000322002|SOX11	REV__ENSG00000176887|ENST00000322002|SOX11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2789306640625	1	574.257965	573.250688	0.54762	0.00031448	-3.701	-0.0021253	-3.1534	-0.0018108	574.2593137630445	77.879	0.29031	77.636	77.532	77.823	-0.24232					9	6	2	0	0	0	0.027866	1	9303	9303		14.664	5.8418	1	31814	+		53460	27053	37317	37378	58673	58673					-0.05300692536002316
NGAAKCELQV	10	Unmodified	_NGAAKCELQV_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2745971679688	2	516.760766	1031.50698	-0.7908	-0.00040866	-1.6022	-0.00082797	-2.393	-0.0012366	516.759850226058	45.798	0.34285	45.647	45.48	45.823	-0.15157					15	9	2	0	0	0	0.03519	1	4436	4436		14.865	0	1	339650	+		53461	24228	37318	37379	58674	58674					-0.007513778138900307
NGAFYAAIA	9	Unmodified	_NGAFYAAIA_					0	0	0			REV__ENST00000514499.1_1_4:153804397-153831368:+|nuORF	REV__ENST00000514499.1_1_4:153804397-153831368:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2701721191406	2	449.226885	896.439217	0.0062887	2.825E-06	-1.756	-0.00078885	-1.7497	-0.00078603	449.2262340485947	21.565	0.48524	21.375	21.128	21.613	-0.19072					14	9	2	0	0	0	0.024466	1	647	647		25.45	6.0902	1	30508	+		53462	25706	37319	37380	58675	58675					-0.013144596823963184
NGAKFIGT	8	Unmodified	_NGAKFIGT_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2327880859375	2	404.221603	806.428653	1.5707	0.00063492	-1.9973	-0.00080734	-0.42654	-0.00017242	404.22091168327114	84.509	0.46417	84.35	84.192	84.657	-0.15869					16	10	2	0	0	0	0.027866	1	10270	10270		51.335	0	1	113720			53463	6374	37320	37381	58676	58676					0.017695576632036136
NGAKVRKW	8	Unmodified	_NGAKVRKW_					0	0	0			REV__ENSG00000168505|ENST00000306318|GBX2	REV__ENSG00000168505|ENST00000306318|GBX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7923889160156	2	479.782693	957.550834	-0.44232	-0.00021222	-1.2171	-0.00058394	-1.6594	-0.00079616	479.78145086266284	53.655	0.65174	53.508	53.132	53.784	-0.14723					25	17	2	0	0	0	0.027866	1	5833	5833		19.36	0.25645	1	162400	+		53464	26268	37321	37382	58677	58677					0.0703601946541994
NGARLVQP	8	Unmodified	_NGARLVQP_					0	0	0			REV__ENST00000590075.1_1_19:5679497-5680497:-|nuORF	REV__ENST00000590075.1_1_19:5679497-5680497:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7580871582031	2	427.745776	853.477	0.33009	0.0001412	-1.1171	-0.00047781	-0.78696	-0.00033662	427.7443719035118	41.285	0.38824	41.308	41.076	41.464	0.023006					13	10	2	0	0	0	0.027866	1	3671	3671		19.36	0	1	270270	+		53465	35691	37322	37383	58678	58678					0.04440051303083692
NGATRKLAL	9	Unmodified	_NGATRKLAL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2878723144531	2	472.287808	942.561064	-0.66236	-0.00031282	-0.031312	-1.4788E-05	-0.69367	-0.00032761	472.28774074365884	30.2	1.3391	30.021	29.612	30.952	-0.17817					48	31	3	0	0	0	0.22902	1	1907	1907		85.161	8.3142	1	1227200			53466	1808	37323	37384	58679	58679					0.08748582399982752
NGATRKLAL	9	Unmodified	_NGATRKLAL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2879333496094	2	472.287808	942.561064	-0.31698	-0.00014971	-0.50167	-0.00023693	-0.81865	-0.00038664	472.28752155917596	30.255	1.1831	30.105	29.501	30.684	-0.14952					49	27	3	0	0	0	0.2101	1	1897	1897		87.696	0.76184	1	1306900			53467	1808	37323	37384	58680	58680					0.08748582399982752
NGATRKLAL	9	Unmodified	_NGATRKLAL_					0	0	0		nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.287808	942.561064	-0.20202	-9.5411E-05	-0.34948	-0.00016506	-0.5515	-0.00026047	472.2876068487973	30.301	0.96991	30.057	29.612	30.582	-0.24415	-0.004287	-5.9593E-05	NaN	87.696	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1262900			53468	1808	37323	37384							0.08748582399982752
NGATSKGVSL	10	Unmodified	_NGATSKGVSL_					0	0	0			REV__ENST00000507292.1_1_6:35824956-35836900:-|nuORF	REV__ENST00000507292.1_1_6:35824956-35836900:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.2536315917969	2	467.253631	932.49271	0.11535	5.39E-05	-0.28712	-0.00013416	-0.17177	-8.026E-05	467.25338580052164	34.064	1.1091	34.114	33.765	34.874	0.050255					79	27	5	0	0	0	0.64538	1	2449	2449		71.877	3.0906	1	3293900	+		53469	34044	37324	37385	58681	58681					0.023762930294765283
NGAWLPCWEE	10	Unmodified	_NGAWLPCWEE_					0	0	0			REV__nc|ENSG00000243477|O43820-2|HYAL3	REV__nc|ENSG00000243477|O43820-2|HYAL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5148620605469	3	402.174574	1203.50189	0.86821	0.00034917	1.9315	0.00077679	2.7997	0.001126	402.175211517898	24.229	0.63988	24.054	23.786	24.425	-0.17484					35	14	3	0	0	0	0.03519	1	1048	1048		24.232	0	1	288660	+		53470	27883	37325	37386	58682	58682					-0.09171681676502885
NGDQHGNM	8	Unmodified	_NGDQHGNM_					0	0	0		ENSG00000145626|ENST00000274278|UGT3A1;UGT3A1|p.R400Q|1|0.3|ENSG00000145626|chr5:35955741-35955741|C/T|missense_variant	ENSG00000145626|ENST00000274278|UGT3A1	ENSG00000145626|ENST00000274278|UGT3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7746276855469	2	436.669408	871.324264	0.26182	0.00011433	2.9576	0.0012915	3.2194	0.0014058	436.6708479489682	90.152	0.19731	90.136	90.038	90.235	-0.016716					6	4	2	0	0	0	0.027866	1	11349	11349		31.955	13.63	1	40709			53471	5823	37326	37387	58683	58683					-0.11654512155826069
NGEKEQKFY	9	Unmodified	_NGEKEQKFY_					0	0	0		ENST00000517973.1_1_5:150400193-150407688:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000517973.1_1_5:150400193-150407688:+|nuORF	ENST00000517973.1_1_5:150400193-150407688:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.780029296875	2	571.77747	1141.54039	-0.15775	-9.0197E-05	1.6092	0.00092011	1.4515	0.00082991	571.7782835439427	26.03	0.46761	25.86	25.582	26.05	-0.17018					18	13	2	0	0	0	0.024495	1	1248	1248		42.396	15.703	1	104350			53472	10476	37327	37388	58684	58684					-0.02472052770326627
NGGIITSSK	9	Unmodified	_NGGIITSSK_					0	0	0		ENST00000414386.5_1_6:41491709-41491922:-|nuORF	ENST00000414386.5_1_6:41491709-41491922:-|nuORF	ENST00000414386.5_1_6:41491709-41491922:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2471618652344	2	438.742899	875.471246	-0.26032	-0.00011421	0.16414	7.2015E-05	-0.096182	-4.2199E-05	438.7428746991931	26.608	0.57537	26.585	26.283	26.859	-0.023087					25	13	3	0	0	0	0.024374	1	1381	1381		13.454	0.49486	1	168570			53473	13860	37328	37389	58685	58685					0.02852908000761545
NGGKRLTLT	9	Unmodified	_NGGKRLTLT_					0	0	0			REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2938537597656	2	480.285266	958.555979	2.2484	0.0010799	-2.1366	-0.0010262	0.11185	5.372E-05	480.28411903884427	24.719	0.56457	24.538	24.114	24.678	-0.18089					15	12	2	0	0	0	0.024466	1	1032	1032		24.519	8.046	1	48070	+		53474	24421;34296	37329	37390	58686	58686					0.07504278537362552
NGGKRLTLT	9	Unmodified	_NGGKRLTLT_					0	0	0			REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;REV__ENST00000520550.1_1_5:67588878-67591317:+|nuORF	REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.285266	958.555979	0.089267	4.2874E-05	-0.95091	-0.00045671	-0.86164	-0.00041383	480.28470563601394	24.828	0.3922	24.613	24.506	24.898	-0.2151	0.037394	0.0005006	NaN	36.447	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73360	+		53475	24421;34296	37329	37390							0.07504278537362552
NGGLSDRLL	9	Unmodified	_NGGLSDRLL_					0	0	0			REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	REV__KIF15|p.E548Gfs*10|1|0.07|ENSG00000163808|chr3:44802946-44802947|-/GTATGCAC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77447509765625	2	472.761623	943.508694	0.40476	0.00019135	-0.86382	-0.00040838	-0.45906	-0.00021703	472.76099079932413	36.793	0.47024	36.729	36.508	36.978	-0.063385					22	11	3	0	0	0	0.024374	1	2945	2945		32.812	3.6629	1	103750	+		53476	25637	37330	37391	58687	58687					0.03467999266388233
NGGNLNSPP	9	Unmodified	_NGGNLNSPP_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2098693847656	2	435.209224	868.403895	0.40973	0.00017832	-0.13231	-5.7584E-05	0.27742	0.00012073	435.20908748676936	98.401	0.84854	98.401	98.063	98.912	0					34	19	2	0	0	0	0.80003	1	12570	12570		39.253	0.44669	1	340050			53477	1660	37331	37392	58688	58688					-0.03557122210190755
NGGNLNSPP	9	Unmodified	_NGGNLNSPP_					0	0	0		ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	ENSG00000079335|ENST00000336454|CDC14A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.209224	868.403895	0.43182	0.00018793	-0.036483	-1.5878E-05	0.39534	0.00017206	435.20916001134776	98.509	0.94015	98.52	98.105	99.046	0.010239	0.044615	0.0001665	NaN	39.253	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315300			53478	1660	37331	37392							-0.03557122210190755
NGGPMRLYV	9	Unmodified	_NGGPMRLYV_					0	0	0		nc|ENSG00000100461|Q86U06-5|RBM23;ENST00000556186.5_1_14:23373460-23374730:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23;ENSG00000100461|ENST00000359890|RBM23	nc|ENSG00000100461|Q86U06-5|RBM23	nc|ENSG00000100461|Q86U06-5|RBM23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2670593261719	2	503.760569	1005.50659	0.41882	0.00021098	1.1824	0.00059565	1.6012	0.00080663	503.76136863515825	71.434	0.37939	71.434	71.263	71.642	0					18	9	3	0	0	0	0.024354	1	8646	8646		47.916	7.1374	1	102740			53479	18126	37332	37393	58689	58689					0.00405247256912844
NGHKIRLEKL	10	Unmodified	_NGHKIRLEKL_					0	0	0			REV__DMTF1|p.N330Kfs*8|1|0.11|ENSG00000135164|chr7:87184566-87184567|TT/-|frameshift_variant	REV__DMTF1|p.N330Kfs*8|1|0.11|ENSG00000135164|chr7:87184566-87184567|TT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3665161132812	2	604.367121	1206.71969	-0.63259	-0.00038232	0.014142	8.5468E-06	-0.61845	-0.00037377	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	1.126	1	12915	12915		19.104	0	1	4804600	+		53480	19681	37333	37394	58690	58690					0.12459876308275852
NGHSVSPHPL	10	Unmodified	_NGHSVSPHPL_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7647094726562	2	522.764697	1043.51484	-1.5401	-0.00080509	1.2654	0.00066152	-0.27465	-0.00014358	522.7652173848695	35.946	0.82659	35.946	35.647	36.474	0					55	22	3	0	0	0	0.96965	1	2823	2823		49.442	0	1	5515300	+		53481	27028	37334	37395	58691	58691					-0.005174825020958451
NGHSVSPHPL	10	Unmodified	_NGHSVSPHPL_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7645874023438	2	522.764697	1043.51484	-0.5545	-0.00028987	0.17386	9.0886E-05	-0.38064	-0.00019899	522.7646778054808	35.848	1.0717	35.892	35.343	36.415	0.04406					75	28	3	0	0	0	0.74632	1	2735	2735		64.207	10.856	1	5251300	+		53482	27028	37334	37395	58692	58692					-0.005174825020958451
NGIPTPLI	8	Unmodified	_NGIPTPLI_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.7461242675781	2	412.747453	823.480354	0.79299	0.0003273	-3.8237	-0.0015782	-3.0307	-0.0012509	412.7457786960996	84.338	1.9792	84.338	83.605	85.584	0					109	46	5	0	0	0	1.0239	1	10534	10534		33.516	1.5607	1	6308600			53483	5635	37335	37396	58693	58693					0.06155301357091503
NGISYKDL	8	Unmodified	_NGISYKDL_					0	0	0		ENSG00000174016|ENST00000308293|TENT5D	ENSG00000174016|ENST00000308293|TENT5D	ENSG00000174016|ENST00000308293|TENT5D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.2383117675781	2	455.23745	908.460347	0.42051	0.00019143	-1.0199	-0.00046428	-0.59936	-0.00027285	455.23689333793243	102.86	0.63401	102.86	102.59	103.23	-0.0046005					36	15	3	0	0	0	1.0516	1	13100	13100		29.15	1.2673	1	1402500			53484	8436	37336	37397	58694	58694					0.002455056264693667
NGKYNGKTR	9	Unmodified	_NGKYNGKTR_					0	0	0		ENST00000544208.1_1_9:37522456-37525129:-|nuORF	ENST00000544208.1_1_9:37522456-37525129:-|nuORF	ENST00000544208.1_1_9:37522456-37525129:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7871704101562	2	519.277972	1036.54139	0.0366	1.9005E-05	-1.9906	-0.0010337	-1.954	-0.0010147	519.7783140919166	24.901	0.43984	24.726	24.511	24.95	-0.17484					12	9	2	0	0	0	0.0242	1	1107	1107		51.193	0	1	34679			53485	16475	37337	37398	58695	58695					0.024582063892239603
NGLCVNTRG	9	Unmodified	_NGLCVNTRG_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.2339172363281	2	467.232176	932.449799	0.22057	0.00010306	2.943	0.0013751	3.1636	0.0014781	467.2332752582269	67.825	0.97179	67.591	67.303	68.275	-0.23375					49	23	5	0	0	0	0.56934	1	7831	7831		54.776	12.38	1	715620			53486	7509	37338	37399	58696	58696					-0.019128002996012583
NGLELLPP	8	Unmodified	_NGLELLPP_					0	0	0		ENST00000376714.7_1_13:96705526-96705706:-|nuORF	ENST00000376714.7_1_13:96705526-96705706:-|nuORF	ENST00000376714.7_1_13:96705526-96705706:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.30267333984375	2	426.744911	851.475269	0.55936	0.0002387	-0.016483	-7.034E-06	0.54287	0.00023167	426.7446554564876	67.677	0.61733	67.7	67.43	68.047	0.023911					34	15	3	0	0	0	0.027866	1	8043	8043		18.324	6.1176	1	593950			53487	13185	37339	37400	58697	58697					0.04358997494466621
NGLKMTAPLW	10	Unmodified	_NGLKMTAPLW_					0	0	0			REV__ENST00000579434.5_1_18:51796255-51800364:+|nuORF	REV__ENST00000579434.5_1_18:51796255-51800364:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.8067016601562	2	565.804977	1129.5954	-1.5009	-0.0008492	4.3773	0.0024767	2.8764	0.0016275	565.8073004687079	28.869	1.297	28.869	27.999	29.296	0					87	31	4	0	0	0	0.99657	1	1724	1724		46.457	5.6786	1	1420400	+		53488	35505	37340	37401	58698	58698					0.03578662496556717
NGLPEPLL	8	Unmodified	_NGLPEPLL_					0	0	0			REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.30279541015625	2	426.744911	851.475269	0.501	0.0002138	2.5975	0.0011085	3.0985	0.0013223	426.7450338254155	67.929	0.56792	67.696	67.513	68.081	-0.23376					18	13	2	0	0	0	0.027866	1	7884	7884		45.952	10.334	1	80856	+		53489	27877	37341	37402	58699	58699					0.043589974944893584
NGLQKSSSL	9	Unmodified	_NGLQKSSSL_					0	0	0		nc|ENSG00000156500|Q6P4D5-2|PABIR3;ENST00000463842.1_1_X:133979267-133988244:+|nuORF;ENSG00000156500|ENST00000645433|PABIR3	nc|ENSG00000156500|Q6P4D5-2|PABIR3	nc|ENSG00000156500|Q6P4D5-2|PABIR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.25341796875	2	467.253631	932.49271	0.17937	8.3813E-05	-0.42896	-0.00020043	-0.24958	-0.00011662	467.2533541695556	34.098	1.1685	34.093	33.715	34.883	-0.0045624					72	29	4	0	0	0	0.23085	2	2510	2500;2510		84.916	8.1414	1	3362600			53490	6535	37342	37403	58700;58701	58701					0.023762930294765283
NGLRPRLS	8	Unmodified	_NGLRPRLS_					0	0	0			REV__ENSG00000147145|ENST00000614823|LPAR4	REV__ENSG00000147145|ENST00000614823|LPAR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.77215576171875	2	456.772326	911.530098	0.69424	0.00031711	-0.97041	-0.00044326	-0.27617	-0.00012615	456.77181425540806	89.099	2.1744	89.078	88.266	90.44	-0.021645					106	51	4	0	0	0	1.043	1	11225	11225		30.504	3.7075	1	3725800	+		53491	24531	37343	37404	58702	58702					0.07079429085752054
NGLRRVLD	8	Unmodified	_NGLRRVLD_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__Q7Z3Z0;ENSG00000204897|ENST00000312150|KRT25;CON__P02535-1;CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;TPT1-KRT17|1|fusion;ENSG00000186395|ENST00000269576|KRT10;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;CON__P13645;CON__P19001;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;nc|ENSG00000171346|P19012-2|KRT15;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;CON__A2A4G1;CON__Q148H6;KRT28|p.V253*|1|0.08|ENSG00000173908|chr17:40797215-40797215|C/-|frameshift_variant;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000171446|ENST00000301656|KRT27;CON__Q7Z3Y8;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000493253.5_1_17:39778327-39780527:-|nuORF	CON__P13646-1;CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P19012;CON__Q148H6;ENSG00000173908|ENST00000306658|KRT28;ENSG00000171446|ENST00000301656|KRT27;CON__Q9QWL7;ENST00000493253.5_1_17:39778327-39780527:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7771301269531	2	471.777608	941.540663	-0.60938	-0.00028749	1.5513	0.00073189	0.94196	0.0004444	471.7782556024808	29.042	0.60992	29.042	28.613	29.223	0					46	14	4	0	0	0	1.0009	1	1741	1741		37.159	5.2042	1	2291600		+	53492	524;514;573;502;539;564;493;15498;565	37344	37405	58703	58703					0.06755411740175532
NGNINIPN	8	Unmodified	_NGNINIPN_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7575378417969	2	428.219591	854.42463	0.10682	4.5742E-05	3.7665	0.0016129	3.8734	0.0016587	428.21994696496876	41.253	0.23249	41.117	41.022	41.255	-0.13553					6	5	2	0	0	0	0.027866	1	3652	3652		44.117	0	1	36114			53493	3357	37345	37406	58704	58704					-0.00840531830533564
NGPLPKKE	8	Unmodified	_NGPLPKKE_					0	0	0			REV__ENSG00000126950|ENST00000372930|TMEM35A	REV__ENSG00000126950|ENST00000372930|TMEM35A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2355041503906	2	441.75581	881.497067	-0.16165	-7.1412E-05	0.26497	0.00011705	0.10331	4.564E-05	441.7558652883046	34.22	0.85234	34.22	33.7	34.552	0					28	21	2	0	0	0	0.027866	1	2495	2495		53.351	26.555	1	305650	+		53494	22914	37346	37407	58705	58705					0.05157802243036258
NGQLDYSF	8	Unmodified	_NGQLDYSF_					0	0	0		nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5;ENSG00000240764|ENST00000252087|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7537841796875	2	472.211432	942.408311	-0.028241	-1.3336E-05	-2.4014	-0.001134	-2.4296	-0.0011473	472.20994993154324	34.999	1.405	34.999	34.444	35.849	0					46	36	2	0	0	0	0.027866	1	2786	2786		24.203	6.8378	1	148160			53495	10773	37347	37408	58706	58706					-0.06519657787271171
NGQQLYKV	8	Unmodified	_NGQQLYKV_					0	0	0		ENST00000275227.8_2_6:133092182-133093307:-|nuORF	ENST00000275227.8_2_6:133092182-133093307:-|nuORF	ENST00000275227.8_2_6:133092182-133093307:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7671203613281	2	475.258717	948.50288	0.36286	0.00017245	1.2033	0.00057189	1.5662	0.00074434	475.2589495160995	55.297	0.27102	55.146	55.065	55.336	-0.15036					12	7	2	0	0	0	0.027866	1	6058	6058		31.955	0	1	170850			53496	11685	37348	37409	58707	58707					0.02656900754709568
NGRLLIALDS	10	Unmodified	_NGRLLIALDS_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.311767578125	2	536.31148	1070.60841	0.59137	0.00031716	-0.25105	-0.00013464	0.34032	0.00018252	536.3113371043105	97.078	1.1595	96.954	96.572	97.732	-0.12368					69	25	5	0	0	0	0.98754	1	12035	12035		47.657	7.5992	1	563610	+		53497	26216	37349	37410	58708	58708					0.07592816880310238
NGRRLAEP	8	Unmodified	_NGRRLAEP_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	REV__nc|ENSG00000107331|Q9BZC7-2|ABCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7540283203125	2	456.754133	911.493713	-0.16103	-7.3553E-05	0.38991	0.00017809	0.22888	0.00010454	456.75420670625556	22.793	0.78004	22.718	22.317	23.097	-0.075296					47	16	4	0	0	0	1.0106	1	812	812		35.618	1.4457	1	995320	+		53498	21664	37350	37411	58709	58709					0.03442552189039816
NGSFAVRVDKD	11	Unmodified	_NGSFAVRVDKD_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.2070007324219	3	403.207043	1206.5993	0.56756	0.00022884	-0.50768	-0.0002047	0.059876	2.4143E-05	403.20684995404906	35.205	0.94285	35.205	34.906	35.849	0					64	24	3	0	0	0	0.99648	1	2701	2701		37.6	2.4479	1	7756500	+		53499	36956	37351	37412	58710	58710					0.0042642352398161165
NGSKEEFWS	9	Unmodified	_NGSKEEFWS_					0	0	0			REV__ENSG00000019485|ENST00000683152|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7537231445312	2	542.240721	1082.46689	-1.0525	-0.00057069	-4.1238	-0.0022361	-5.1762	-0.0028068	542.2378065204916	38.234	0.18753	38.013	37.898	38.085	-0.22149					6	5	2	0	0	0	0.024495	1	3123	3123		14.137	0	1	210520	+		53500	19987	37352	37413	58711	58711					-0.07104601212813577
NGTQLSAPPQ	10	Unmodified	_NGTQLSAPPQ_					0	0	0			REV__ENSG00000197183|ENST00000621426|NOL4L	REV__ENSG00000197183|ENST00000621426|NOL4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.78045654296875	2	506.756538	1011.49852	-0.88171	-0.00044681	0.67487	0.00034199	-0.20685	-0.00010482	506.7568573950466	38.383	0.66642	38.161	37.832	38.498	-0.22149					40	18	3	0	0	0	0.03519	1	3198	3198		28.081	18.376	1	716340	+		53501	28276	37353	37414	58712	58712					-0.006766084588662125
NGVHNSTKHNP	11	Unmodified	_NGVHNSTKHNP_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.5706787109375	3	402.198771	1203.57448	0.62867	0.00025285	0.378	0.00015203	1.0067	0.00040488	402.1984883183618	20.202	0.92207	20.035	19.62	20.542	-0.16774					39	18	4	0	0	0	0.024797	1	481	481		10.998	0	1	78195	+		53502	28095	37354	37415	58713	58713					-0.01916211558705072
NGVLKRVSA	9	Unmodified	_NGVLKRVSA_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2879638671875	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.85329	1	11686	11686		35.618	3.6634	1	42478000			53503	858	37355	37416	58714	58714					0.0874858239999412
NGVLKRVSA	9	Unmodified	_NGVLKRVSA_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2878112792969	2	472.287808	942.561064	-0.32971	-0.00015572	-0.19839	-9.3697E-05	-0.5281	-0.00024942	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.94809	1	11782	11782		29.15	6.1071	1	42351000			53504	858	37355	37416	58715	58715					0.0874858239999412
NHAPLREQGAI	11	Unmodified	_NHAPLREQGAI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.5509338378906	3	402.551033	1204.63127	0.86825	0.00034952	-0.5135	-0.00020671	0.35475	0.00014281	402.55087598156456	23.384	1.1067	23.182	22.64	23.747	-0.20193					75	24	4	0	0	0	0.84303	1	936	936		55.084	0.36156	1	2797200			53505	7775	37356	37417	58716	58716					0.03713835997814385
NHFKDSERRQY	11	Unmodified	_NHFKDSERRQY_					0	0	0		UNC13B|p.E276K|1|0.11|ENSG00000198722|chr9:35310531-35310531|G/A|missense_variant	UNC13B|p.E276K|1|0.11|ENSG00000198722|chr9:35310531-35310531|G/A|missense_variant	UNC13B|p.E276K|1|0.11|ENSG00000198722|chr9:35310531-35310531|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.26983642578125	3	493.907768	1478.70147	-0.12431	-6.1399E-05	2.5542	0.0012615	2.4299	0.0012001	493.9098109428034	25.23	0.46065	25.059	24.869	25.33	-0.17078					15	10	2	0	0	0	0.024816	1	1200	1200		27.644	18.432	1	56022			53506	38127	37357	37418	58717	58717					-0.018729104043814004
NHFTRPDFKP	10	Unmodified	_NHFTRPDFKP_					0	0	0			REV__ENSG00000237412|ENST00000617714|PRSS56	REV__ENSG00000237412|ENST00000617714|PRSS56	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.240234375	3	420.215761	1257.62546	-0.06385	-2.6831E-05	-1.4741	-0.00061943	-1.5379	-0.00064626	420.5498061130385	37.271	0.75164	37.208	36.904	37.655	-0.063385					51	20	4	0	0	0	0.03519	1	3028	3028		23.378	10.945	1	165350	+		53507	28942	37358	37419	58718	58718					0.006947374861283606
NHFVVLDAD	9	Unmodified	_NHFVVLDAD_					0	0	0			REV__ENSG00000111335|ENST00000392583|OAS2	REV__ENSG00000111335|ENST00000392583|OAS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7343139648438	2	515.253631	1028.49271	-0.37192	-0.00019163	-0.86281	-0.00044456	-1.2347	-0.0006362	515.25292145372	41.953	0.50133	41.721	41.469	41.971	-0.23186					22	13	3	0	0	0	0.024354	1	3742	3742		30.504	0	1	276630	+		53508	21910	37359	37420	58719	58719					-0.020397069705268223
NHGPRPLLS	9	Unmodified	_NHGPRPLLS_					0	0	0			REV__ENSG00000130733|ENST00000586748|YIPF2	REV__ENSG00000130733|ENST00000586748|YIPF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.2629699707031	2	495.777608	989.540663	-0.52535	-0.00026046	-1.5691	-0.00077794	-2.0945	-0.0010384	495.7773963275845	29.34	1.4502	29.168	28.168	29.618	-0.17258					81	33	4	0	0	0	0.024292	1	1806	1806		40.778	15.328	1	205170	+		53509	23145	37360	37421	58720	58720					0.0454741174019091
NHKALISLS	9	Unmodified	_NHKALISLS_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7772521972656	2	491.787641	981.56073	-1.0368	-0.00050989	2.5469	0.0012525	1.5101	0.00074266	491.78885315017504	46.443	0.74115	46.291	45.92	46.661	-0.15156					36	20	3	0	0	0	0.024418	1	4597	4597		30.318	0	1	1635100	+		53510	24716	37361	37422	58721	58721					0.06921162680146153
NHLLPGGFPP	10	Unmodified	_NHLLPGGFPP_					0	0	0		ENSG00000009709|ENST00000420770|PAX7;nc|ENSG00000009709|P23759-2|PAX7;nc|ENSG00000009709|P23759-1|PAX7	ENSG00000009709|ENST00000420770|PAX7	ENSG00000009709|ENST00000420770|PAX7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7821655273438	2	524.782359	1047.55016	-0.68783	-0.00036096	0.029875	1.5678E-05	-0.65795	-0.00034528	524.7821978316495	28.023	0.55516	28.019	27.731	28.286	-0.0042019					51	13	5	0	0	0	1.0408	1	1607	1607		40.573	0	1	1518700			53511	859	37362	37423	58722	58722					0.028291800257193245
NHLVQYMLI	9	Unmodified	_NHLVQYMLI_					0	0	0		ENST00000355899.7_1_X:114884577-114884703:+|nuORF	ENST00000355899.7_1_X:114884577-114884703:+|nuORF	ENST00000355899.7_1_X:114884577-114884703:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.8068237304688	2	565.804977	1129.5954	-1.5009	-0.0008492	4.3773	0.0024767	2.8764	0.0016275	565.8073004687079	28.869	1.297	28.869	27.999	29.296	0					87	31	4	0	0	0	0.78069	1	1713	1713		40.573	7.7602	1	1420400			53512	12658	37363	37424	58723	58723					0.035786624965794545
NHPKDKLV	8	Unmodified	_NHPKDKLV_					0	0	0			REV__ENST00000429417.1_1_2:192746108-192746309:-|nuORF	REV__ENST00000429417.1_1_2:192746108-192746309:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.2540283203125	2	475.774534	949.534515	-0.73414	-0.00034929	1.6465	0.00078335	0.91234	0.00043407	475.7752208688356	27.255	0.43126	27.337	26.996	27.427	0.081293					18	11	2	0	0	0	0.027866	1	1372	1372		33.516	0	1	125590	+		53513	23249	37364	37425	58724	58724					0.05772893508662946
NHPLATYHY	9	Unmodified	_NHPLATYHY_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2103881835938	2	558.267073	1114.51959	-0.3446	-0.00019238	-3.3248	-0.0018561	-3.6694	-0.0020485	558.2651920423963	34.775	0.40625	34.569	34.446	34.852	-0.20696					11	9	2	0	0	0	0.022484	1	2609	2609		82.305	23.523	1	81231			53514	6508	37365	37426	58725	58725					-0.03308598359330972
NHPLATYHY	9	Unmodified	_NHPLATYHY_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.267073	1114.51959	-0.50035	-0.00027933	3.2749	0.0018283	2.7746	0.0015489	558.2688030107129	34.911	0.89854	34.911	34.444	35.343	0	0.1957	6.8855E-07	NaN	82.305	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262370			53515	6508	37365	37426							-0.03308598359330972
NHPLATYHY	9	Unmodified	_NHPLATYHY_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.267073	1114.51959	-0.74374	-0.0004152	3.5689	0.0019924	2.8251	0.0015772	558.2688921634528	34.62	0.95275	34.616	34.261	35.214	-0.0045624	-0.099791	0.0003289	NaN	82.305	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250580			53516	6508	37365	37426							-0.03308598359330972
NHPLATYHY	9	Unmodified	_NHPLATYHY_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.267073	1114.51959	-0.56546	-0.00031567	3.5789	0.001998	3.0134	0.0016823	558.2688722881827	34.716	0.944	34.767	34.367	35.311	0.050251	0.051046	0.00034009	NaN	82.305	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226260			53517	6508	37365	37426							-0.03308598359330972
NHPLMYNSV	9	Unmodified	_NHPLMYNSV_					0	0	0		ENST00000419007.5_1_3:50311763-50312407:+|nuORF;nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	ENST00000419007.5_1_3:50311763-50312407:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7984008789062	2	537.755484	1073.49641	-0.30013	-0.0001614	-3.4807	-0.0018718	-3.7808	-0.0020332	537.7545596172682	50.203	0.78659	49.923	49.472	50.258	-0.27977					31	20	2	0	0	0	0.024374	1	5100	5100		49.442	3.4896	1	496300			53518	905	37366	37427	58726	58726					-0.037393604683074955
NHSEWPVPK	9	Unmodified	_NHSEWPVPK_					0	0	0			REV__ENST00000480825.6_1_1:36931960-36932521:-|nuORF	REV__ENST00000480825.6_1_1:36931960-36932521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7896118164062	2	547.274898	1092.53524	-0.47022	-0.00025734	3.8039	0.0020818	3.3337	0.0018245	547.2766035239567	30.562	1.5847	30.412	29.542	31.127	-0.14952					65	37	3	0	0	0	0.024209	1	1995	1995		47.657	32.016	1	326500	+		53519	22463	37367	37428	58727	58727					-0.007323118423073538
NHTAISKGY	9	Unmodified	_NHTAISKGY_					0	0	0		nc|ENSG00000164591|Q8TDC0-2|MYOZ3;ENSG00000164591|ENST00000517768|MYOZ3	nc|ENSG00000164591|Q8TDC0-2|MYOZ3	nc|ENSG00000164591|Q8TDC0-2|MYOZ3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.7230529785156	2	495.753798	989.493044	-0.37156	-0.0001842	-1.9176	-0.00095066	-2.2892	-0.0011349	495.7531382335943	47.901	0.317	47.748	47.574	47.891	-0.15301					15	9	2	0	0	0	0.02435	1	4809	4809		42.396	0	1	380220			53520	7295	37368	37429	58728	58728					-0.0021228725065611798
NHTLREKIHYI	11	Unmodified	_NHTLREKIHYI_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2260437011719	3	475.265004	1422.77318	-0.5287	-0.00025127	0.39579	0.0001881	-0.13291	-6.3169E-05	475.2647489988021	27.289	0.46568	27.121	26.851	27.317	-0.16816					17	10	3	0	0	0	0.024821	1	1463	1463		14.086	0	1	94750			53521	728	37369	37430	58729	58729					0.07870629020135311
NHTRIEPL	8	Unmodified	_NHTRIEPL_					0	0	0			REV__ENSG00000104140|ENST00000220507|RHOV	REV__ENSG00000104140|ENST00000220507|RHOV	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.3185119628906	2	490.269616	978.524678	-1.3069	-0.00064071	2.24	0.0010982	0.93316	0.0004575	490.2704443020836	29.496	0.43166	29.251	28.967	29.399	-0.24524					17	9	2	0	0	0	0.027866	1	1828	1828		26.796	0	1	111690	+		53522	21421	37370	37431	58730	58730					0.03455705503279205
NHVEYYTMP	9	Unmodified	_NHVEYYTMP_					0	0	0		nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.2326049804688	2	577.252774	1152.491	-0.70334	-0.00040601	-4.3295	-0.0024992	-5.0329	-0.0029052	577.2502203431856	38.853	0.49957	38.754	38.591	39.091	-0.098755					20	13	2	0	0	0	0.024541	1	3275	3275		26.693	0	1	111600			53523	7645	37371	37432	58731	58731					-0.07915084050819132
NHVQVVLVL	9	Unmodified	_NHVQVVLVL_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7894592285156	2	510.813659	1019.61277	-0.30979	-0.00015824	-1.3356	-0.00068224	-1.6454	-0.00084049	510.8128163666458	41.756	0.41443	41.525	41.274	41.688	-0.2303					25	10	3	0	0	0	0.024436	1	3675	3675		47.916	12.297	1	465170	+		53524	26244	37372	37433	58732	58732					0.10374326093892705
NHYIADLR	8	Unmodified	_NHYIADLR_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7636413574219	2	501.261791	1000.50903	-0.070362	-3.527E-05	0.69601	0.00034888	0.62565	0.00031361	501.26155572932964	42.727	0.84858	42.588	42.108	42.956	-0.13929					40	23	3	0	0	0	0.027866	1	3981	3981		66.429	28.618	1	505460	+		53525	20134	37373	37434	58733	58733					0.008794189862328494
NHYIIPAL	8	Unmodified	_NHYIIPAL_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2906494140625	2	470.766178	939.517802	-0.31708	-0.00014927	-1.8842	-0.00088702	-2.2013	-0.0010363	470.7643256335351	28.075	0.32853	27.829	27.593	27.921	-0.24524					10	7	2	0	0	0	0.027866	1	1612	1612		39.021	7.0666	1	50552	+		53526	28047	37374	37435	58734	58734					0.04562392622710831
NIAEILQET	9	Unmodified	_NIAEILQET_					0	0	0			REV__nc|ENSG00000145349|Q13557-11|CAMK2D	REV__nc|ENSG00000145349|Q13557-11|CAMK2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2847290039062	2	515.774396	1029.53424	-0.85372	-0.00044033	0.3673	0.00018944	-0.48643	-0.00025089	515.7746095064813	81.935	0.65806	81.961	81.7	82.358	0.025711					34	15	3	0	0	0	0.024427	1	10190	10190		34.173	20.035	1	794350	+		53527	24401	37375	37436	58735	58735					0.020654289981621332
NIAEILQET	9	Unmodified	_NIAEILQET_					0	0	0			REV__nc|ENSG00000145349|Q13557-11|CAMK2D	REV__nc|ENSG00000145349|Q13557-11|CAMK2D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.774396	1029.53424	-0.58281	-0.0003006	-0.29341	-0.00015134	-0.87622	-0.00045193	515.7745310986617	82.022	0.69459	82.022	81.711	82.406	0	0.014644	-0.00031554	NaN	26.693	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	773530	+		53528	24401	37375	37436							0.020654289981621332
NIAIELTKP	9	Unmodified	_NIAIELTKP_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.78961181640625	2	499.797675	997.580796	0.22042	0.00011017	-0.3386	-0.00016923	-0.11817	-5.9063E-05	499.7973506501646	92.489	0.66122	92.499	92.227	92.888	0.009407					33	15	3	0	0	0	0.024319	1	11699	11699		39.253	0	1	287940			53529	4326	37376	37437	58736	58736					0.08190913620092033
NIAIKELEA	9	Unmodified	_NIAIKELEA_					0	0	0		nc|ENSG00000244005|Q9Y697-3|NFS1	nc|ENSG00000244005|Q9Y697-3|NFS1	nc|ENSG00000244005|Q9Y697-3|NFS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7865295410156	2	500.787307	999.560061	-0.22719	-0.00011377	0.65163	0.00032633	0.42444	0.00021255	500.7871347341914	55.031	1.3379	54.88	54.409	55.747	-0.15036					142	37	6	0	0	0	0.14024	1	6016	6016		101.6	5.4103	1	4169000			53530	18763	37377	37438	58737	58737					0.060263232404167866
NIAIRSSY	8	Unmodified	_NIAIRSSY_					0	0	0			REV__KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	REV__KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.25067138671875	2	462.250892	922.48723	-0.10913	-5.0445E-05	-0.43817	-0.00020254	-0.5473	-0.00025299	462.25055457817837	30.351	1.0963	30.201	29.835	30.931	-0.14952					67	25	4	0	0	0	0.93274	1	1933	1933		47.916	0	1	4626400	+		53531	27594	37378	37439	58738	58738					0.022886142376592034
NIAKLLTPK	9	Unmodified	_NIAKLLTPK_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.31292724609375	2	499.32386	996.633166	-0.51643	-0.00025787	0.43184	0.00021563	-0.084599	-4.2242E-05	499.3240264730496	76.715	0.42629	76.546	76.309	76.735	-0.16854					15	9	2	0	0	0	0.024466	1	9092	9092		39.253	1.4413	1	94201			53532	10835	37379	37440	58739	58739					0.1347149675370929
NIALAFHL	8	Unmodified	_NIALAFHL_					0	0	0		nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3;ENSG00000183576|ENST00000331768|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7586975097656	2	449.760895	897.507237	-0.53805	-0.00024199	-4.4706	-0.0020107	-5.0087	-0.0022527	449.75889799941183	44.584	1.398	44.584	44.215	45.613	0					110	40	4	0	0	0	0.71717	1	4252	4252		65.897	2.5912	1	13254000			53533	9244	37380	37441	58740	58740					0.05438409968269298
NIALPATK	8	Unmodified	_NIALPATK_					0	0	0		ENSG00000042980|ENST00000265769|ADAM28;nc|ENSG00000042980|Q9UKQ2-2|ADAM28	ENSG00000042980|ENST00000265769|ADAM28	ENSG00000042980|ENST00000265769|ADAM28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2896423339844	2	414.252903	826.491253	-0.065066	-2.6954E-05	0.094499	3.9147E-05	0.029433	1.2193E-05	414.25282194498857	34.556	0.51451	34.332	34.106	34.621	-0.22412					16	12	2	0	0	0	0.027866	1	2534	2534		15.642	0	1	69410			53534	1084	37381	37442	58741	58741					0.07106703731369635
NIALPATK	8	Unmodified	_NIALPATK_					0	0	0		ENSG00000042980|ENST00000265769|ADAM28;nc|ENSG00000042980|Q9UKQ2-2|ADAM28	ENSG00000042980|ENST00000265769|ADAM28	ENSG00000042980|ENST00000265769|ADAM28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.2893981933594	2	414.252903	826.491253	-0.32558	-0.00013487	0.49729	0.000206	0.17171	7.1131E-05	414.25266655818854	34.524	0.48175	34.317	34.043	34.525	-0.20696					16	11	2	0	0	0	0.027866	1	2537	2537		6.7355	0	1	71439			53535	1084	37381	37442	58742	58742					0.07106703731369635
NIALYLGKQVF	11	Unmodified	_NIALYLGKQVF_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3692016601562	2	633.366256	1264.71796	0.30625	0.00019397	4.1235	0.0026117	4.4298	0.0028057	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	1.0238	1	11871	11871		31.53	1.2121	1	9528000			53536	8507	37382	37443	58743	58743					0.0961882249964674
NIARPSTLL	9	Unmodified	_NIARPSTLL_					0	0	0			REV__ENSG00000197705|ENST00000359358|KLHL14	REV__ENSG00000197705|ENST00000359358|KLHL14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7810974121094	2	492.795466	983.57638	0.87977	0.00043355	0.98437	0.0004851	1.8641	0.00091864	492.7960706550947	78.232	0.37132	78.04	77.764	78.135	-0.1921					16	8	3	0	0	0	0.024397	1	9639	9639		56.721	19.562	1	142520	+		53537	28338	37383	37444	58744	58744					0.08393449197183145
NIARVNLTT	9	Unmodified	_NIARVNLTT_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2907409667969	2	501.290548	1000.56654	0.79479	0.00039842	-1.5169	-0.00076043	-0.72216	-0.00036201	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.75397	1	10850	10850		42.396	1.618	1	8460100			53538	2433	37384	37445	58745	58745					0.06628261191792717
NIARVNLTT	9	Unmodified	_NIARVNLTT_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2903747558594	2	501.290548	1000.56654	0.66235	0.00033203	-0.83167	-0.00041691	-0.16932	-8.4879E-05	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	0.87448	1	10076	10076		34.173	0	1	3151900			53539	2433	37384	37445	58746	58746					0.06628261191792717
NIAVLYSF	8	Unmodified	_NIAVLYSF_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1;NOS1|p.C677Lfs*38|1|0.62|ENSG00000089250|chr12:117265424-117265425|-/C|frameshift_variant	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.7845458984375	2	463.752736	925.490919	-0.20684	-9.5923E-05	-3.5883	-0.0016641	-3.7951	-0.00176	463.7507342376953	43.463	0.64794	43.351	42.927	43.575	-0.11253					26	17	2	0	0	0	0.027866	1	3977	3977		45.952	1.5748	1	248150			53540	1904	37385	37446	58747	58747					0.025192840115323634
NIAVVSGDY	9	Unmodified	_NIAVVSGDY_					0	0	0			REV__ENSG00000138435|ENST00000348749|CHRNA1	REV__ENSG00000138435|ENST00000348749|CHRNA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.30499267578125	2	469.234907	936.455261	0.14268	6.6951E-05	-0.33729	-0.00015827	-0.19461	-9.1318E-05	469.2346418301647	53.326	0.45356	53.199	52.913	53.366	-0.12705					16	11	2	0	0	0	0.024323	1	5561	5561		44.117	29.453	1	136280	+		53541	19411	37386	37447	58748	58748					-0.015507982361327777
NICKGLTLL	9	Unmodified	_NICKGLTLL_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7906799316406	2	487.788795	973.563038	0.33726	0.00016451	3.3292	0.001624	3.6665	0.0017885	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.85329	1	10033	10033		35.618	1.4457	1	1999500	+		53542	23832;36707	37387	37448	58749	58749					0.0751987509358969
NICNITTLD	9	Unmodified	_NICNITTLD_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2723693847656	2	503.747324	1005.4801	0.015296	7.7054E-06	1.2409	0.0006251	1.2562	0.0006328	504.24791091741275	50.061	0.53358	50.142	49.81	50.344	0.08099					23	15	2	0	0	0	0.0245	1	5160	5160		36.447	3.6343	1	189150			53543	6234	37388	37449	58750	58750					-0.022424864250751853
NICPQDCLRG	10	Unmodified	_NICPQDCLRG_					0	0	0		nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET	nc|ENSG00000165731|P07949-2|RET	nc|ENSG00000165731|P07949-2|RET	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.7579345703125	2	559.757701	1117.50085	0.2847	0.00015936	-0.99536	-0.00055716	-0.71065	-0.00039779	559.7568912054852	71.526	0.68896	71.32	71.051	71.74	-0.20613					38	16	3	0	0	0	1.1311	1	8364	8364		28.577	0.49524	1	1132000			53544	7460	37389	37450	58751	58751					-0.053202193170818646
NICQSLPSL	9	Unmodified	_NICQSLPSL_					0	0	0			REV__nc|ENSG00000188092|B7ZAQ6-4|GPR89A	REV__nc|ENSG00000188092|B7ZAQ6-4|GPR89A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7521667480469	2	487.75241	973.490267	-0.42406	-0.00020684	0.082127	4.0057E-05	-0.34193	-0.00016678	487.75222325490967	75.491	0.96056	75.246	74.838	75.799	-0.24455					65	25	4	0	0	0	0.19099	1	9226	9226		90.37	5.209	1	1706800	+		53545	37037	37390	37451	58752	58752					0.0024612130016521405
NIDATKLVQV	10	Unmodified	_NIDATKLVQV_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8208618164062	2	550.819138	1099.62372	0.11238	6.1899E-05	3.2042	0.0017649	3.3166	0.0018268	550.8208481024678	101.83	1.2564	101.66	101.38	102.64	-0.17178					71	29	3	0	0	0	0.60734	2	12625	12625;12637		76.17	1.9146	1	814900	+		53546	25354	37391	37452	58753;58754	58753					0.07789683677515313
NIDAVRVTV	9	Unmodified	_NIDAVRVTV_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.78277587890625	2	493.785099	985.555644	-0.40118	-0.0001981	-0.12842	-6.3411E-05	-0.5296	-0.00026151	493.78498529325793	56.868	1.0583	56.704	55.986	57.045	-0.16431					89	29	4	0	0	0	0.19099	1	6321	6321		90.37	26.163	1	6512500	+		53547	26001	37392	37453	58755	58755					0.06228858817519267
NIDAVRVTV	9	Unmodified	_NIDAVRVTV_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7822265625	2	493.785099	985.555644	-0.39549	-0.00019529	-0.15148	-7.4797E-05	-0.54697	-0.00027009	493.78499496875804	56.508	1.051	56.606	55.965	57.016	0.097893					92	29	4	0	0	0	0.22902	1	6223	6223		85.161	13.865	1	6788600	+		53548	26001	37392	37453	58756	58756					0.06228858817519267
NIDDLKKR	8	Unmodified	_NIDDLKKR_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2900695800781	2	501.290548	1000.56654	-0.25386	-0.00012726	-0.032713	-1.6399E-05	-0.28657	-0.00014365	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	1.043	1	10141	10141		30.504	0	1	2648000			53549	8540	37393	37454	58757	58757					0.06628261191804086
NIDGRRKAP	9	Unmodified	_NIDGRRKAP_					0	0	0			REV__ENST00000412485.1_1_X:13285365-13285440:-|nuORF	REV__ENST00000412485.1_1_X:13285365-13285440:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2694091796875	2	513.793789	1025.57303	0.14836	7.6228E-05	1.4829	0.00076193	1.6313	0.00083816	513.7945483664529	79.136	0.54176	78.986	78.737	79.278	-0.15051					19	12	2	0	0	0	0.024506	1	9483	9483		30.504	0	1	103940	+		53550	31999	37394	37455	58758	58758					0.061261991431820206
NIDINNNEL	9	Unmodified	_NIDINNNEL_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7633056640625	2	529.759278	1057.504	-0.84238	-0.00044626	-1.1915	-0.00063123	-2.0339	-0.0010775	529.7585246917329	85.573	0.70312	85.598	85.243	85.946	0.025536					38	16	3	0	0	0	0.76818	1	10676	10676		41.427	0.85399	1	1349300			53551	5157	37395	37456	58759	58759					-0.022449296670401964
NIDLRDLQA	9	Unmodified	_NIDLRDLQA_					0	0	0			REV__ENSG00000140548|ENST00000268154|ZNF710	REV__ENSG00000140548|ENST00000268154|ZNF710	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297119140625	2	529.285463	1056.55637	-0.75033	-0.00039714	-3.8009	-0.0020118	-4.5512	-0.0024089	529.2828721685836	56.333	0.10744	56.177	56.102	56.21	-0.15601					4	2	2	0	0	0	0.023239	1	6239	6239		64.207	0	1	18712	+		53552	24028	37396	37457	58760	58760					0.030356534665770596
NIDLVRVRLEL	11	Unmodified	_NIDLVRVRLEL_					0	0	0			REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	REV__DSG1|p.D516Efs*46|1|0.3|ENSG00000134760|chr18:31339886-31339886|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.2740783691406	3	447.273388	1338.79833	0.79111	0.00035384	-1.7113	-0.00076543	-0.92022	-0.00041159	447.27252393560246	106.17	0.60676	106.17	105.93	106.54	0					88	23	5	0	0	0	1.0621	1	13621	13621		21.78	1.75	1	2219100	+		53553	19712	37397	37458	58761	58761					0.14248683822711428
NIDNVCIDS	9	Unmodified	_NIDNVCIDS_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.29522705078125	2	496.721307	991.42806	-1.1328	-0.00056268	-1.936	-0.00096163	-3.0687	-0.0015243	496.7205195440771	41.081	0.49109	40.851	40.589	41.08	-0.2303					18	12	2	0	0	0	0.024313	1	3613	3613		60.118	20.865	1	152300			53554	2613	37398	37459	58762	58762					-0.0679964983884247
NIDNVCIDS	9	Unmodified	_NIDNVCIDS_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.721307	991.42806	0.78554	0.00039019	-1.0239	-0.00050861	-0.2384	-0.00011842	496.7206145088125	40.77	0.49909	40.646	40.407	40.906	-0.12317	-0.082972	-0.00028651	NaN	60.118	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336110			53555	2613	37398	37459							-0.0679964983884247
NIDNVCIDS	9	Unmodified	_NIDNVCIDS_					0	0	0		ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	ENSG00000104884|ENST00000391945|ERCC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.721307	991.42806	-0.32223	-0.00016006	0.02864	1.4226E-05	-0.29359	-0.00014583	496.72124520604916	40.714	0.44304	40.737	40.527	40.97	0.023006	0.0073663	0.00075916	NaN	60.118	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310520			53556	2613	37398	37459							-0.0679964983884247
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2522583007812	2	519.252243	1036.48993	-0.10631	-5.5203E-05	-0.09677	-5.0248E-05	-0.20308	-0.00010545	519.2520640457129	75.185	0.78258	74.91	74.638	75.42	-0.27573					41	18	3	0	0	0	0.027092	2	8878	8878;8891		143.89	80.58	1	1363200			53557	3543	37399	37460	58763;58764	58763					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2521362304688	2	519.252243	1036.48993	0.010482	5.443E-06	0.089942	4.6703E-05	0.10042	5.2146E-05	519.2521237808622	75.191	0.74298	74.928	74.651	75.394	-0.26276					42	17	3	0	0	0	0.15366	1	8899	8899		98.629	50.972	1	1391900			53558	3543	37399	37460	58765	58765					-0.02685298419692117
NIDPITMAY	9	Unmodified	_NIDPITMAY_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2520141601562	2	519.252243	1036.48993	0.43162	0.00022412	-0.84246	-0.00043745	-0.41085	-0.00021333	519.2517134054414	75.054	0.82733	74.879	74.562	75.389	-0.17548					33	19	2	0	0	0	0.047345	2	8866	8856;8866		129.68	60.59	1	1297600			53559	3543	37399	37460	58766;58767	58767					-0.02685298419692117
NIDPSALQP	9	Unmodified	_NIDPSALQP_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.30029296875	2	477.748182	953.481811	0.31675	0.00015132	0.38352	0.00018323	0.70027	0.00033455	477.7478154707108	37.584	0.78821	37.584	37.081	37.869	0					63	21	4	0	0	0	0.023635	1	3114	3114		56.721	0	1	1193500			53560	5169	37400	37461	58768	58768					0.0032089065517766358
NIDQIKIVF	9	Unmodified	_NIDQIKIVF_					0	0	0			REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3172607421875	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.67687	1	11036	11036		47.657	1.6851	1	3635800	+		53561	19282	37401	37462	58769	58769					0.08222889028479585
NIDRKFAE	8	Unmodified	_NIDRKFAE_					0	0	0			REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2953796386719	2	496.761623	991.508694	0.072446	3.5988E-05	-0.13324	-6.6187E-05	-0.060792	-3.0199E-05	496.7612791527203	41.166	0.5298	41.189	40.899	41.429	0.023003					27	14	2	0	0	0	0.027866	1	3648	3648		37.812	7.3079	1	1885100	+		53562	32706	37402	37463	58770	58770					0.012599992663808735
NIDRPADID	9	Unmodified	_NIDRPADID_					0	0	0		ENST00000492097.5_1_3:141882642-141900319:-|nuORF;nc|ENSG00000175066|Q6ZS86-3|GK5;ENSG00000175066|ENST00000392993|GK5	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7923583984375	2	514.753995	1027.49344	-0.2154	-0.00011088	4.0744	0.0020973	3.859	0.0019864	514.7555143254584	25.327	0.78521	25.407	25.006	25.792	0.08009					28	18	3	0	0	0	0.024319	1	1164	1164		24.519	0.31644	1	104360			53563	8524	37403	37464	58771	58771					-0.019209123214750434
NIDRPADID	9	Unmodified	_NIDRPADID_					0	0	0		ENST00000492097.5_1_3:141882642-141900319:-|nuORF;nc|ENSG00000175066|Q6ZS86-3|GK5;ENSG00000175066|ENST00000392993|GK5	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.753995	1027.49344	-0.71452	-0.0003678	0.97501	0.00050189	0.26049	0.00013409	514.7544193224171	25.777	0.45988	25.55	25.352	25.812	-0.22683	0.056411	-0.00066835	NaN	24.519	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467660			53564	8524	37403	37464							-0.019209123214750434
NIDRPADID	9	Unmodified	_NIDRPADID_					0	0	0		ENST00000492097.5_1_3:141882642-141900319:-|nuORF;nc|ENSG00000175066|Q6ZS86-3|GK5;ENSG00000175066|ENST00000392993|GK5	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.753995	1027.49344	-0.19099	-9.8312E-05	0.65657	0.00033797	0.46558	0.00023966	514.7542457408582	25.533	0.41789	25.362	25.163	25.581	-0.17078	-0.13121	-0.00099619	NaN	24.519	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372240			53565	8524	37403	37464							-0.019209123214750434
NIDSSQYED	9	Unmodified	_NIDSSQYED_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000570021.1_1_15:75676553-75682127:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.768310546875	2	535.717276	1069.42	-0.33045	-0.00017703	1.2223	0.00065482	0.89187	0.00047779	535.7180131597776	36.91	0.34491	36.847	36.669	37.014	-0.063385					16	8	2	0	0	0	0.024457	1	2956	2956		29.15	0	1	165920			53566	7933	37404	37465	58772	58772					-0.11193505554615513
NIDVVPFNV	9	Unmodified	_NIDVVPFNV_					0	0	0		nc|ENSG00000007306|Q14002-2|CEACAM7;ENSG00000007306|ENST00000401731|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.302001953125	2	508.7742	1015.53385	0.023769	1.2093E-05	3.8041	0.0019354	3.8279	0.0019475	508.7762096599489	55.859	0.46003	55.859	55.679	56.139	0					17	12	2	0	0	0	0.024307	1	6241	6241		46.457	5.0302	1	149460			53567	814	37405	37466	58773	58773					0.026700540689603258
NIEAGRGQV	9	Unmodified	_NIEAGRGQV_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2817687988281	2	472.251423	942.488293	0.08011	3.7832E-05	2.1546	0.0010175	2.2348	0.0010554	472.2536618246547	47.25	0.26945	47.154	47.008	47.278	-0.096649					9	6	2	0	0	0	0.023655	1	4607	4607		28.081	0	1	63313			53568	6841	37406	37467	58774	58774					0.014748286065696448
NIEAIELAE	9	Unmodified	_NIEAIELAE_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7867431640625	2	501.261122	1000.50769	-0.32942	-0.00016513	4.2935	0.0021522	3.9641	0.001987	501.26357066150763	54.745	0.45412	54.745	54.524	54.979	0					24	12	3	0	0	0	0.022832	1	6027	6027		62.107	1.9892	1	185770			53569	952	37407	37468	58775	58775					0.007457401068108993
NIEERTRR	8	Unmodified	_NIEERTRR_					0	0	0			REV__CON__Q61726	REV__CON__Q61726	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3052978515625	2	537.294153	1072.57375	-0.95082	-0.00051087	-2.0344	-0.0010931	-2.9852	-0.0016039	537.292884727692	47.964	0.25288	47.811	47.606	47.858	-0.15301					9	7	2	0	0	0	0.027866	1	4805	4805		73.975	10.668	1	559160	+	+	53570	19592	37408	37469	58776	58776					0.040369937922378085
NIELFDFI	8	Unmodified	_NIELFDFI_					0	0	0		ENST00000347364.7_1_20:10394255-10394354:-|nuORF	ENST00000347364.7_1_20:10394255-10394354:-|nuORF	ENST00000347364.7_1_20:10394255-10394354:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.74554443359375	2	505.7633	1009.51205	-0.48043	-0.00024298	1.368	0.00069187	0.88755	0.00044889	505.76447096301956	82.599	1.1533	82.599	82.113	83.266	0					39	26	2	0	0	0	0.027866	1	10253	10253		45.952	10.334	1	123010			53571	12571	37409	37470	58777	58777					0.0076724932038132465
NIENLNGKI	9	Unmodified	_NIENLNGKI_					0	0	0		nc|ENSG00000038945|P21757-2|MSR1;nc|ENSG00000038945|P21757-3|MSR1;ENSG00000038945|ENST00000262101|MSR1	nc|ENSG00000038945|P21757-2|MSR1	nc|ENSG00000038945|P21757-2|MSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.33294677734375	2	507.782556	1013.55056	-0.0017492	-8.8823E-07	0.93893	0.00047677	0.93719	0.00047589	507.7826600135537	41.383	1.0002	41.26	40.762	41.762	-0.12317					29	27	2	0	0	0	0.023837	1	3737	3737		54.776	0	1	193170			53572	1056	37410	37471	58778	58778					0.04432554954905754
NIENLNGKI	9	Unmodified	_NIENLNGKI_					0	0	0		nc|ENSG00000038945|P21757-2|MSR1;nc|ENSG00000038945|P21757-3|MSR1;ENSG00000038945|ENST00000262101|MSR1	nc|ENSG00000038945|P21757-2|MSR1	nc|ENSG00000038945|P21757-2|MSR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.782556	1013.55056	-0.38168	-0.00019381	1.7246	0.00087575	1.343	0.00068194	507.7829547115	41.161	0.39217	40.934	40.729	41.121	-0.2278	-0.12377	0.00079419	NaN	54.776	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49880			53573	1056	37410	37471							0.04432554954905754
NIENLNGKI	9	Unmodified	_NIENLNGKI_					0	0	0		nc|ENSG00000038945|P21757-2|MSR1;nc|ENSG00000038945|P21757-3|MSR1;ENSG00000038945|ENST00000262101|MSR1	nc|ENSG00000038945|P21757-2|MSR1	nc|ENSG00000038945|P21757-2|MSR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.782556	1013.55056	-0.94565	-0.00048019	0.19838	0.00010073	-0.74727	-0.00037945	507.7830599441548	41.209	0.27128	40.979	40.848	41.119	-0.2303	-0.078541	-0.00075584	NaN	54.776	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80029			53574	1056	37410	37471							0.04432554954905754
NIENTLPPG	9	Unmodified	_NIENTLPPG_					0	0	0			REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	477.748182	953.481811	-0.21322	-0.00010186	1.3268	0.00063387	1.1136	0.00053201	477.74814509346197	37.611	0.92224	37.643	37.035	37.957	0.032269					72	24	4	0	0	0	0.023417	1	3044	3044		58.782	10.866	1	1028500	+		53575	37234	37411	37472	58779	58779					0.0032089065518903226
NIENTLPPG	9	Unmodified	_NIENTLPPG_					0	0	0			REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.748182	953.481811	-0.99478	-0.00047525	0.14982	7.1578E-05	-0.84495	-0.00040367	477.7483113415538	37.751	0.33757	37.531	37.35	37.688	-0.2195	-0.034207	-0.00018753	NaN	58.782	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183850	+		53576	37234	37411	37472							0.0032089065518903226
NIEPMKFKP	9	Unmodified	_NIEPMKFKP_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8246459960938	2	552.299527	1102.5845	-0.98437	-0.00054367	3.9364	0.0021741	2.952	0.0016304	552.302774057981	75.198	0.41741	75.198	74.995	75.413	0					20	10	3	0	0	0	0.024288	1	9228	9228		52.937	6.9847	1	134880	+		53577	22797	37412	37473	58780	58780					0.037312601223220554
NIEQILDEV	9	Unmodified	_NIEQILDEV_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.305419921875	2	536.779679	1071.5448	-0.36579	-0.00019635	1.1283	0.00060565	0.76251	0.0004093	536.7804595936191	47.885	0.56057	47.698	47.491	48.052	-0.18684					35	14	3	0	0	0	0.024374	1	4714	4714		49.442	10.635	1	784180			53578	3855	37413	37474	58781	58781					0.011894116525809295
NIERFTLFQG	10	Unmodified	_NIERFTLFQG_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.506591796875	3	408.8839	1223.62987	1.0138	0.00041452	-3.1563	-0.0012906	-2.1426	-0.00087606	408.88259200209325	19.189	0.64421	18.989	18.761	19.405	-0.2001					25	12	3	0	0	0	0.03519	1	433	433		24.232	2.5461	1	81601	+		53579	20054	37414	37475	58782	58782					0.027002019090332396
NIERFTLFQG	10	Unmodified	_NIERFTLFQG_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	408.8839	1223.62987	0.73973	0.00030246	-3.094	-0.0012651	-2.3542	-0.00096261	408.8825337816876	19.087	0.54433	18.926	18.738	19.282	-0.1608	-0.026788	0.00017011	NaN	24.232	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73790	+		53580	20054	37414	37475							0.027002019090332396
NIERFTLFQG	10	Unmodified	_NIERFTLFQG_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	408.8839	1223.62987	1.97	0.00080549	-3.6988	-0.0015124	-1.7288	-0.00070688	408.8820907080158	19.178	0.59357	18.944	18.682	19.275	-0.23345	-0.0087296	-0.00057182	NaN	24.232	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63227	+		53581	20054	37414	37475							0.027002019090332396
NIEVAAGKAK	10	Unmodified	_NIEVAAGKAK_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.78448486328125	2	500.792924	999.571294	0.31958	0.00016004	3.3185	0.0016619	3.6381	0.0018219	500.7942300460648	72.189	0.53148	71.927	71.598	72.13	-0.26199					25	12	3	0	0	0	0.03519	1	8478	8478		30.318	3.6248	1	288490	+		53582	23521	37415	37476	58783	58783					0.07149145334562945
NIEVVLVKI	9	Unmodified	_NIEVVLVKI_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8312377929688	2	513.831517	1025.64848	-0.29351	-0.00015081	-0.024575	-1.2627E-05	-0.31808	-0.00016344	513.8314423041779	67.309	1.0921	67.333	67.071	68.163	0.023911					77	27	4	0	0	0	0.48817	1	7943	7943		60.118	7.1816	1	5611200			53583	186	37416	37477	58784	58784					0.13668363550914364
NIFAQKVQ	8	Unmodified	_NIFAQKVQ_					0	0	0			REV__ENSG00000205330|ENST00000642104|OR6C1	REV__ENSG00000205330|ENST00000642104|OR6C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.2708740234375	2	474.269084	946.523616	5.5732	0.0026432	-1.9069	-0.00090437	3.6663	0.0017388	474.2680180216086	17.563	0.47274	17.623	17.48	17.952	0.06036					25	12	3	0	0	0	0.68535	1	146	146		68.485	5.1784	1	177140	+		53584	28673	37417	37478	58785	58785					0.048214911343848144
NIFEDIGDY	9	Unmodified	_NIFEDIGDY_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2449951171875	2	543.242929	1084.47131	-0.33295	-0.00018087	-1.1623	-0.00063142	-1.4953	-0.00081229	543.2421929038951	89.65	0.70171	89.628	89.409	90.111	-0.021645					18	16	2	0	0	0	0.024495	1	11287	11287		34.173	0	1	59869			53585	3264	37418	37479	58786	58786					-0.06755136789888638
NIFFSCFGAV	10	Unmodified	_NIFFSCFGAV_					0	0	0		ENST00000572218.5_2_17:44107443-44107545:-|nuORF	ENST00000572218.5_2_17:44107443-44107545:-|nuORF	ENST00000572218.5_2_17:44107443-44107545:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.765869140625	2	552.762778	1103.511	3.3931	0.0018756	-0.75932	-0.00041972	2.6338	0.0014559	552.7623028017557	16.823	0.24829	16.823	16.698	16.946	0					18	7	3	0	0	0	1.0665	1	93	93		37.159	2.9866	1	72471			53586	17055	37419	37480	58787	58787					-0.036612883201769364
NIFFSIKT	8	Unmodified	_NIFFSIKT_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.792724609375	2	485.273835	968.533118	-0.39177	-0.00019011	0.56664	0.00027497	0.17487	8.4861E-05	485.2736864932025	79.328	0.75097	79.328	79.035	79.786	0					24	17	2	0	0	0	0.027866	1	9838	9838		34.173	14.813	1	144890	+		53587	20103	37420	37481	58788	58788					0.047592594199159066
NIFILRQN	8	Unmodified	_NIFILRQN_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2739562988281	2	509.295633	1016.57671	0.090653	4.6169E-05	3.7445	0.001907	3.8351	0.0019532	509.79999718600004	90.355	0.37814	90.368	90.2	90.578	0.013443					13	8	2	0	0	0	0.027866	1	11368	11368		26.796	0	1	73183	+		53588	25736	37421	37482	58789	58789					0.06908868917037125
NIFLLGFAW	9	Unmodified	_NIFLLGFAW_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.79443359375	2	540.797478	1079.5804	-1.4355	-0.00077631	-2.7643	-0.0014949	-4.1998	-0.0022712	540.7958004722778	51.64	0.8212	51.369	51.084	51.905	-0.27079					38	18	3	0	0	0	0.75282	1	5317	5317		42.474	3.2216	1	1481000	+		53589	20459	37422	37483	58790	58790					0.04379538690909612
NIFQKELVV	9	Unmodified	_NIFQKELVV_					0	0	0			REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3170166015625	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.74711	1	11129	11129		42.864	1.4377	1	11705000	+		53590	30123	37423	37484	58791	58791					0.08222889028479585
NIFQKELVV	9	Unmodified	_NIFQKELVV_					0	0	0			REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3171997070312	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.89441	1	11338	11338		32.812	1.2826	1	11601000	+		53591	30123	37423	37484	58792	58792					0.08222889028479585
NIFQKELVV	9	Unmodified	_NIFQKELVV_					0	0	0			REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165283203125	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.56934	2	11363	11315;11363		54.776	1.8396	1	12792000	+		53592	30123	37423	37484	58793;58794	58794					0.08222889028479585
NIFQKELVV	9	Unmodified	_NIFQKELVV_					0	0	0			REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.31640625	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.67687	2	11115	11115;11140		47.657	7.7122	1	15621000	+		53593	30123	37423	37484	58795;58796	58795					0.08222889028479585
NIFQKELVV	9	Unmodified	_NIFQKELVV_					0	0	0			REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.318774	1088.623	-1.8246	-0.00099497	-2.3302	-0.0012707	-4.1548	-0.0022657	545.3173861251879	92.083	1.5585	91.939	91.617	93.175	-0.14356					78	36	4	0	0	0	0.75397	1	11301	11301		42.396	4.5846	1	1597200	+		53594	30123	37423	37484	58797	58797					0.08222889028479585
NIFQKELVV	9	Unmodified	_NIFQKELVV_					0	0	0			REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	REV__ENST00000306376.9_1_3:185765629-185765818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3168334960938	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.70156	1	11103	11103		45.972	8.8131	1	17068000	+		53595	30123	37423	37484	58798	58798					0.08222889028479585
NIFRGLIDN	9	Unmodified	_NIFRGLIDN_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3;REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3023071289062	2	531.290548	1060.56654	-0.76148	-0.00040457	4.1921	0.0022272	3.4307	0.0018227	531.2926219269815	33.649	2.2408	33.449	32.771	35.012	-0.20019					94	56	2	0	0	0	0.024477	1	2532	2532		14.865	0	1	253070	+		53596	26188;35437	37424	37485	58799	58799					0.03868261191814781
NIFRGLIDN	9	Unmodified	_NIFRGLIDN_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3;REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.290548	1060.56654	-1.2297	-0.00065331	5.4925	0.0029181	4.2628	0.0022648	531.2920397035551	33.165	0.19474	33.165	33.056	33.251	0	-0.2	0.0012462	NaN	9.7057	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25189	+		53597	26188;35437	37424	37485							0.03868261191814781
NIFSIPYF	8	Unmodified	_NIFSIPYF_					0	0	0		nc|ENSG00000079739|P36871-3|PGM1;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1	nc|ENSG00000079739|P36871-3|PGM1	nc|ENSG00000079739|P36871-3|PGM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2774353027344	2	500.760561	999.506569	0.20007	0.00010019	-1.2874	-0.00064468	-1.0873	-0.00054449	500.76012112497443	61.468	1.2734	61.468	60.807	62.08	0					90	33	4	0	0	0	0.027866	1	7039	7039		28.254	0	1	4058400			53598	1673	37425	37486	58800	58800					0.006795705285639997
NIFSPQELPG	10	Unmodified	_NIFSPQELPG_					0	0	0		ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.82470703125	2	551.282389	1100.55022	0.14835	8.178E-05	-3.9619	-0.0021841	-3.8135	-0.0021023	551.2799980452726	36.282	0.56345	36.066	35.845	36.408	-0.21661					26	14	3	0	0	0	0.03519	1	2867	2867		42.396	23.293	1	366320			53599	64	37426	37487	58801	58801					0.003971352350617963
NIFTIKLPL	9	Unmodified	_NIFTIKLPL_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3109741210938	2	529.83406	1057.65357	-0.91261	-0.00048353	1.6979	0.00089962	0.78531	0.00041609	529.8347426801497	57.066	0.14259	57.066	56.968	57.111	0					5	3	2	0	0	0	0.024313	1	6398	6398		60.118	5.3419	1	42878	+		53600	36711	37427	37488	58802	58802					0.12704667413527204
NIFTQAIVAL	10	Unmodified	_NIFTQAIVAL_					0	0	0			REV__PLXNB3|p.D1792N|1|0.41|ENSG00000198753|chrX:153778060-153778060|G/A|missense_variant	REV__PLXNB3|p.D1792N|1|0.41|ENSG00000198753|chrX:153778060-153778060|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3169555664062	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	0.83673	1	10758	10758		58.23	7.0372	1	4888900	+		53601	37386	37428	37489	58803	58803					0.08222889028479585
NIFTQAIVAL	10	Unmodified	_NIFTQAIVAL_					0	0	0			REV__PLXNB3|p.D1792N|1|0.41|ENSG00000198753|chrX:153778060-153778060|G/A|missense_variant	REV__PLXNB3|p.D1792N|1|0.41|ENSG00000198753|chrX:153778060-153778060|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3164672851562	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.0508	1	10932	10932		39.253	2.0937	1	17068000	+		53602	37386	37428	37489	58804	58804					0.08222889028479585
NIGDTTLVL	9	Unmodified	_NIGDTTLVL_					0	0	0			REV__ENSG00000163644|ENST00000608933|PPM1K	REV__ENSG00000163644|ENST00000608933|PPM1K	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.27197265625	2	473.266207	944.517862	-0.12888	-6.0995E-05	0.39574	0.00018729	0.26686	0.0001263	473.2662813897746	64.871	0.58251	64.908	64.672	65.254	0.037384					39	15	3	0	0	0	0.024263	1	7566	7566		42.396	6.7778	1	1403800	+		53603	25611	37429	37490	58805	58805					0.04338347832049294
NIGEARPI	8	Unmodified	_NIGEARPI_					0	0	0			REV__CENPI|p.H741Y|1|0.43|ENSG00000102384|chrX:101162917-101162917|C/T|missense_variant;REV__ENSG00000102384|ENST00000682095|CENPI	REV__ENSG00000102384|ENST00000682095|CENPI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7798156738281	2	435.245609	868.476666	-0.86771	-0.00037767	1.5867	0.00069058	0.71894	0.00031292	435.2461007332288	39.663	0.64877	39.551	39.255	39.904	-0.11223					43	17	3	0	0	0	0.027866	1	3455	3455		68.787	0	1	839290	+		53604	21306;19291	37430	37491	58806	58806					0.03716631583245089
NIGKRELWNS	10	Unmodified	_NIGKRELWNS_					0	0	0		ENST00000358872.7_1_11:8486316-8615774:-|nuORF	ENST00000358872.7_1_11:8486316-8615774:-|nuORF	ENST00000358872.7_1_11:8486316-8615774:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	609.7570190429688	2	608.825286	1215.63602	-0.82266	-0.00050086	-3.3876	-0.0020625	-4.2103	-0.0025633	608.8227262023813	53.169	0.68921	53.042	52.713	53.402	-0.12705					25	17	2	0	0	0	0.03519	1	5540	5540		17.468	4.014	1	96540			53605	12725	37431	37492	58807	58807					0.03682720140568563
NIGLQLYAKV	10	Unmodified	_NIGLQLYAKV_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.831787109375	2	559.832049	1117.64954	-0.14007	-7.8418E-05	-0.016712	-9.3561E-06	-0.15679	-8.7774E-05	559.831823225614	78.905	1.7462	78.924	78.609	80.355	0.018677					107	41	5	0	0	0	0.62431	1	9751	9751		74.255	1.3758	1	3344200	+		53606	21336	37432	37493	58808	58808					0.09542577919796713
NIGLSPHF	8	Unmodified	_NIGLSPHF_					0	0	0			REV__ENST00000474704.1_1_17:27041663-27041825:-|nuORF	REV__ENST00000474704.1_1_17:27041663-27041825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.787841796875	2	442.734877	883.455202	-0.25877	-0.00011457	0.422	0.00018684	0.16323	7.2269E-05	442.7346086182045	42.919	0.39124	42.693	42.521	42.912	-0.22597					14	9	2	0	0	0	0.027866	1	3903	3903		31.955	7.7521	1	53774	+		53607	33274	37433	37494	58809	58809					0.008812465545247505
NIGPLLVTLL	10	Unmodified	_NIGPLLVTLL_					0	0	0		ENSG00000101276|ENST00000645534|SLC52A3;nc|ENSG00000101276|Q9NQ40-2|SLC52A3;SLC52A3|p.T96Mfs*53|1|0.16|ENSG00000101276|chr20:765488-765489|-/GAGACTGACA|frameshift_variant	ENSG00000101276|ENST00000645534|SLC52A3	ENSG00000101276|ENST00000645534|SLC52A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.8012084960938	2	526.839342	1051.66413	-0.67669	-0.00035651	0.29156	0.00015361	-0.38513	-0.0002029	526.8394893398553	76.301	0.50177	76.073	75.777	76.279	-0.22843					13	12	2	0	0	0	0.03519	1	9378	9378		64.207	9.431	1	49788			53608	2303	37434	37495	58810	58810					0.1403665006796473
NIGQLVDVKV	10	Unmodified	_NIGQLVDVKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.8230590820312	2	542.821681	1083.62881	-0.51673	-0.00028049	3.7365	0.0020282	3.2197	0.0017477	542.8236844819108	101.8	1.5614	101.63	101.24	102.8	-0.17178					99	36	5	0	0	0	0.72729	1	12660	12660		65.465	1.2581	1	4213200			53609	6055	37435	37496	58811	58811					0.09033987540146882
NIGREQNID	9	Unmodified	_NIGREQNID_					0	0	0			REV__nc|ENSG00000131238|P50897-2|PPT1	REV__nc|ENSG00000131238|P50897-2|PPT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7994384765625	2	529.764894	1057.51524	0.58332	0.00030902	-3.9955	-0.0021166	-3.4121	-0.0018076	529.7625427065618	83.153	0.85716	83.062	82.485	83.342	-0.090454					40	19	3	0	0	0	0.024428	1	10392	10392		47.96	33.295	1	665970	+		53610	23196	37436	37497	58812	58812					-0.011221075729281438
NIHGVVFV	8	Unmodified	_NIHGVVFV_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.2314758300781	2	442.75307	883.491587	-0.32003	-0.00014169	-4.2387	-0.0018767	-4.5587	-0.0020184	442.7510649589059	47.813	1.0363	47.537	47.044	48.08	-0.27598					50	27	3	0	0	0	0.027866	1	4633	4633		54.765	17.736	1	1209700	+		53611	24143	37437	37498	58813	58813					0.04518123451236988
NIHKRIHGV	9	Unmodified	_NIHKRIHGV_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF;RPL31|p.F38L|1|0.22|ENSG00000071082|chr2:101004164-101004164|C/A|missense_variant	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.3197021484375	2	537.319974	1072.6254	-0.24165	-0.00012984	0.45661	0.00024534	0.21496	0.0001155	537.3197436390677	20.002	0.97103	19.835	19.275	20.246	-0.16774					38	19	4	0	0	0	0.43973	1	493	493		63.306	11.971	1	512180			53612	1446	37438	37499	58814	58814					0.09198782276803286
NIHKRIHGV	9	Unmodified	_NIHKRIHGV_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF;RPL31|p.F38L|1|0.22|ENSG00000071082|chr2:101004164-101004164|C/A|missense_variant	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.31982421875	2	537.319974	1072.6254	0.72658	0.00039041	-0.44607	-0.00023968	0.28051	0.00015073	537.319301879627	20.03	0.48049	19.83	19.603	20.084	-0.2001					29	9	4	0	0	0	0.33245	1	491	491		71.296	12.514	1	542920			53613	1446	37438	37499	58815	58815					0.09198782276803286
NIHKRIHGV	9	Unmodified	_NIHKRIHGV_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF;RPL31|p.F38L|1|0.22|ENSG00000071082|chr2:101004164-101004164|C/A|missense_variant	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.3192138671875	2	537.319974	1072.6254	-0.17526	-9.417E-05	0.6915	0.00037156	0.51624	0.00027739	537.3198960994501	20.094	0.58569	19.87	19.68	20.266	-0.22344					28	11	4	0	0	0	0.55828	1	487	487		55.504	16.698	1	434220			53614	1446	37438	37499	58816	58816					0.09198782276803286
NIHLRSTL	8	Unmodified	_NIHLRSTL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.2798767089844	2	477.279983	952.545414	0.33661	0.00016066	-0.2932	-0.00013994	0.043413	2.072E-05	477.27969604357287	37.564	0.39388	37.371	37.114	37.508	-0.193					18	9	2	0	0	0	0.71063	1	3029	3029		66.429	7.6473	1	2164000			53615	9030	37439	37500	58817	58817					0.06724295882941078
NIHLRSTL	8	Unmodified	_NIHLRSTL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.2798156738281	2	477.279983	952.545414	-1.0536	-0.00050287	1.2546	0.00059877	0.20094	9.5907E-05	477.2804348827213	37.525	0.43055	37.306	37.076	37.506	-0.2195					27	10	3	0	0	0	0.5947	1	3021	3021		76.774	12.567	1	1831600			53616	9030	37439	37500	58818	58818					0.06724295882941078
NIHLRSTL	8	Unmodified	_NIHLRSTL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.280029296875	2	477.279983	952.545414	-0.75543	-0.00036055	0.40323	0.00019245	-0.3522	-0.0001681	477.28020793083056	37.574	0.73011	37.364	36.923	37.653	-0.2092					43	18	4	0	0	0	0.95679	1	3006	3006		44.117	3.5442	1	1621100			53617	9030	37439	37500	58819	58819					0.06724295882941078
NIHPKLSKE	9	Unmodified	_NIHPKLSKE_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11;ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3207397460938	2	533.306198	1064.59784	-0.61969	-0.00033048	0.26114	0.00013927	-0.35855	-0.00019122	533.3061994400289	30.123	0.67673	29.878	29.568	30.245	-0.24415					39	15	4	0	0	0	0.024477	1	1914	1914		27.882	5.9224	1	1024400			53618	1339	37440	37501	58820	58820					0.06812834225888764
NIHPSGVKTE	10	Unmodified	_NIHPSGVKTE_					0	0	0		nc|ENSG00000120798|P13056-3|NR2C1;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;nc|ENSG00000120798|P13056-2|NR2C1;ENSG00000120798|ENST00000333003|NR2C1	nc|ENSG00000120798|P13056-3|NR2C1	nc|ENSG00000120798|P13056-3|NR2C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.288330078125	2	541.285463	1080.55637	-0.4652	-0.00025181	1.8187	0.00098443	1.3535	0.00073263	541.2862988211541	40.536	1.699	40.311	40.041	41.74	-0.225					95	44	4	0	0	0	1.0122	1	3571	3571		44.377	1.981	1	3910200			53619	18217	37441	37502	58821	58821					0.019316534665676954
NIIAGDTLSKV	11	Unmodified	_NIIAGDTLSKV_					0	0	0		nc|ENSG00000169507|Q08AI6|SLC38A11;ENSG00000169507|ENST00000685975|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.8264770507812	2	565.824421	1129.63429	0.524	0.00029649	3.0697	0.0017369	3.5937	0.0020334	565.8259664119463	100.95	0.74007	100.82	100.63	101.37	-0.12576					37	18	3	0	0	0	0.63824	1	12530	12530		67.494	12.717	1	338530			53620	7944	37442	37503	58822	58822					0.07465666331927423
NIIAGDTLSKV	11	Unmodified	_NIIAGDTLSKV_					0	0	0		nc|ENSG00000169507|Q08AI6|SLC38A11;ENSG00000169507|ENST00000685975|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8256225585938	2	565.824421	1129.63429	0.058132	3.2892E-05	3.4653	0.0019608	3.5235	0.0019937	565.8262347718664	101.06	0.99853	100.89	100.74	101.74	-0.17178					35	22	3	0	0	0	0.55321	1	12534	12534		72.879	0.63601	1	390680			53621	7944	37442	37503	58823	58823					0.07465666331927423
NIIAGDTLSKV	11	Unmodified	_NIIAGDTLSKV_					0	0	0		nc|ENSG00000169507|Q08AI6|SLC38A11;ENSG00000169507|ENST00000685975|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.824421	1129.63429	-0.49031	-0.00027743	3.8407	0.0021732	3.3504	0.0018957	565.8264514961546	101.09	0.82123	101.09	100.82	101.64	0	0.11504	0.00043023	NaN	72.879	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116240			53622	7944	37442	37503							0.07465666331927423
NIIAGDTLSKV	11	Unmodified	_NIIAGDTLSKV_					0	0	0		nc|ENSG00000169507|Q08AI6|SLC38A11;ENSG00000169507|ENST00000685975|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.824421	1129.63429	-0.36755	-0.00020797	3.4893	0.0019743	3.1218	0.0017664	565.8263089225304	101.04	0.73207	101.05	100.83	101.56	0.0090332	0.077303	3.2576E-05	NaN	72.879	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200740			53623	7944	37442	37503							0.07465666331927423
NIIAGDTLSKV	11	Unmodified	_NIIAGDTLSKV_					0	0	0		nc|ENSG00000169507|Q08AI6|SLC38A11;ENSG00000169507|ENST00000685975|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	nc|ENSG00000169507|Q08AI6|SLC38A11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.824421	1129.63429	-0.42204	-0.0002388	3.9232	0.0022199	3.5012	0.0019811	565.8263684425567	101.12	0.81628	101.12	100.85	101.67	-0.0054474	0.14075	0.0005236	NaN	72.879	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190150			53624	7944	37442	37503							0.07465666331927423
NIIAPCVLI	9	Unmodified	_NIIAPCVLI_					0	0	0		nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7734375	2	478.285889	954.557224	0.4043	0.00019337	2.1555	0.0010309	2.5598	0.0012243	478.2874217795346	46.636	0.52933	46.54	46.295	46.825	-0.096653					21	14	2	0	0	0	0.024386	1	4514	4514		42.474	15.782	1	641900			53625	9923	37443	37504	58824	58824					0.07812776581920389
NIIASLVK	8	Unmodified	_NIIASLVK_					0	0	0			REV__nc|ENSG00000005436|P16383-2|GCFC2	REV__nc|ENSG00000005436|P16383-2|GCFC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.2633972167969	2	429.276378	856.538203	-0.033566	-1.4409E-05	0.082822	3.5554E-05	0.049256	2.1145E-05	429.27599957969596	41.741	0.67181	41.513	41.236	41.908	-0.2278					25	17	3	0	0	0	0.027866	1	3697	3697		33.516	6.7195	1	143860	+		53626	19806	37444	37505	58825	58825					0.1041956328251672
NIIDDFFC	8	Unmodified	_NIIDDFFC_					0	0	0		ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7861022949219	2	493.718036	985.421518	0.75028	0.00037043	-4.3347	-0.0021401	-3.5844	-0.0017697	493.7156654624851	51.75	0.32968	51.566	51.412	51.741	-0.18404					15	8	2	0	0	0	0.027866	1	5323	5323		50.025	10.772	1	152350			53627	8508	37445	37506	58826	58826					-0.07177542999545494
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MSMS	OPSCC_39_ClassI_Rep-1	1	532.8107299804688	2	532.808574	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.547	1	66.547	66.047	67.047	0								0	0	0	0.023134	1	7920	7920		126.24	56.615	1				53628	7356	37446	37507	58827	58827					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MSMS	OPSCC_39_ClassI_Rep-1	1	532.810546875	2	532.808574	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.582	1	66.582	66.082	67.082	0								0	0	0	0.023134	1	7925	7925		126.24	33.047	1				53629	7356	37446	37507	58828	58828					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MSMS	OPSCC_39_ClassI_Rep-1	1	532.8092041015625	2	532.808574	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.665	1	66.665	66.165	67.165	0								0	0	0	0.036569	1	7937	7937		114.89	46.108	1				53630	7356	37446	37507	58829	58829					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MSMS	OPSCC_39_ClassI_Rep-1	1	532.8095092773438	2	532.808574	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.763	1	66.763	66.263	67.263	0								0	0	0	0.026738	1	7951	7951		120.87	48.991	1				53631	7356	37446	37507	58830	58830					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8095703125	2	532.808574	1063.60259	-0.77847	-0.00041477	-0.68466	-0.00036479	-1.4631	-0.00077957	532.8083942063569	67.033	1.583	66.752	66.481	68.064	-0.28149					87	40	3	0	0	0	0.014738	4	7950	7938;7950;7962;7989		163.15	69.145	1	6231900			53632	7356	37446	37507	58831;58832;58833;58834	58832					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.8134765625	2	532.808574	1063.60259	-0.60429	-0.00032197	-0.81314	-0.00043325	-1.4174	-0.00075522	532.8082944331835	66.706	1.4873	66.736	66.491	67.979	0.030098					79	36	3	0	0	0	0.056725	3	7849	7849;7860;7872		126.24	38.488	1	4693500			53633	7356	37446	37507	58835;58836;58837	58835					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.8079833984375	2	532.808574	1063.60259	-0.066854	-3.562E-05	-0.98449	-0.00052454	-1.0513	-0.00056016	532.8079465531397	66.992	1.3565	66.743	66.553	67.91	-0.2484					62	36	2	0	0	0	0.01896	3	7694	7687;7694;7708		150.36	70.649	1	3196300			53634	7356	37446	37507	58838;58839;58840	58839					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.8072509765625	2	532.808574	1063.60259	-0.89522	-0.00047698	-0.083386	-4.4429E-05	-0.97861	-0.00052141	532.808408438527	66.887	1.8461	66.663	66.439	68.285	-0.22374					77	49	3	0	0	0	0.016249	3	7698	7691;7698;7710		155.58	75.872	1	2583700			53635	7356	37446	37507	58841;58842;58843	58842					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.8070678710938	2	532.808574	1063.60259	-0.6814	-0.00036305	-0.29296	-0.00015609	-0.97436	-0.00051915	532.8082787405509	66.918	1.2038	66.673	66.496	67.7	-0.24517					58	32	3	0	0	0	0.01896	3	7687	7678;7687;7698		150.36	38.713	1	3655300			53636	7356	37446	37507	58844;58845;58846	58845					0.07333718368658992
NIIEYEEQP	9	Unmodified	_NIIEYEEQP_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.8287353515625	2	567.769311	1133.52407	0.54114	0.00030724	0.024661	1.4002E-05	0.5658	0.00032125	567.7693909997099	51.817	0.36564	51.633	51.449	51.815	-0.18405					15	9	2	0	0	0	0.024405	1	5364	5364		27.882	0	1	122590	+		53637	23814	37447	37508	58847	58847					-0.03735178727083621
NIIEYEEQP	9	Unmodified	_NIIEYEEQP_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.769311	1133.52407	0.0085675	4.8644E-06	0.47167	0.0002678	0.48023	0.00027266	567.769933346344	51.87	0.43397	51.752	51.54	51.974	-0.11875	0.0075198	-0.00062616	NaN	35.618	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121970	+		53638	23814	37447	37508							-0.03735178727083621
NIIFKGFSTG	10	Unmodified	_NIIFKGFSTG_					0	0	0		ENST00000602381.1_1_11:82895668-82895884:-|nuORF	ENST00000602381.1_1_11:82895668-82895884:-|nuORF	ENST00000602381.1_1_11:82895668-82895884:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7801513671875	2	542.295299	1082.57605	-0.78837	-0.00042753	4.1484	0.0022496	3.36	0.0018221	542.2971275015734	80.524	0.53548	80.378	80.117	80.652	-0.146					25	12	3	0	0	0	0.03519	1	9670	9670		37.812	13.609	1	173380			53639	17526	37448	37509	58848	58848					0.038060294773458736
NIIGRKIR	8	Unmodified	_NIIGRKIR_					0	0	0		ENST00000548897.1_2_12:104309698-104309758:-|nuORF	ENST00000548897.1_2_12:104309698-104309758:-|nuORF	ENST00000548897.1_2_12:104309698-104309758:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.30535888671875	2	485.319443	968.624333	0.21204	0.00010291	2.4305	0.0011796	2.6426	0.0012825	485.320450820763	73.051	0.65075	72.77	72.506	73.157	-0.28124					22	15	2	0	0	0	0.027866	1	8897	8897		17.365	5.1581	1	191290			53640	16561	37449	37510	58849	58849					0.13876567907902881
NIILAYDGT	9	Unmodified	_NIILAYDGT_					0	0	0			REV__ENST00000561385.5_1_15:50189347-50194027:-|nuORF	REV__ENST00000561385.5_1_15:50189347-50194027:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2581481933594	2	490.258382	978.502212	-0.68729	-0.00033695	-0.25279	-0.00012393	-0.94008	-0.00046088	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	0.83071	1	13150	13150		37.159	1.5408	1	5001000	+		53641	19188	37450	37511	58850	58850					0.012100613149868877
NIILGSAIFV	10	Unmodified	_NIILGSAIFV_					0	0	0			REV__nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	REV__nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2731323242188	2	523.815867	1045.61718	-0.68185	-0.00035716	-0.86365	-0.00045239	-1.5455	-0.00080955	523.8155882633383	63.055	0.62568	62.816	62.615	63.24	-0.23926					25	15	3	0	0	0	0.03519	1	7304	7304		47.657	19.775	1	328780	+		53642	20026	37451	37512	58851	58851					0.0961979051680828
NIIPTIPSL	9	Unmodified	_NIIPTIPSL_					0	0	0			REV__CYP4F8|p.G93S|1|0.27|ENSG00000186526|chr19:15618078-15618078|G/A|missense_variant	REV__CYP4F8|p.G93S|1|0.27|ENSG00000186526|chr19:15618078-15618078|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2948913574219	2	484.294768	966.574983	-0.85399	-0.00041358	0.78174	0.00037859	-0.072255	-3.4993E-05	484.29513721707673	85.115	1.0742	85.141	84.788	85.862	0.025536					70	25	4	0	0	0	0.047345	1	10602	10602		129.68	16.271	1	2059500	+		53643	19646	37452	37513	58852	58852					0.09035815108438783
NIIQFGTGY	9	Unmodified	_NIIQFGTGY_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000484989.1_1_13:25026542-25029254:-|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3323669433594	2	506.758549	1011.50255	-0.6057	-0.00030694	4.4072	0.0022334	3.8015	0.0019264	506.760477553562	80.138	0.67301	80.159	79.897	80.57	0.021446					22	15	2	0	0	0	0.024263	1	9923	9923		51.335	0	1	104800			53644	2420	37453	37514	58853	58853					-0.002745189651363944
NIIQMFPLQ	9	Unmodified	_NIIQMFPLQ_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8185424804688	2	552.299527	1102.5845	-0.6019	-0.00033243	-2.9249	-0.0016154	-3.5268	-0.0019479	552.7995987947043	63	0.93673	63	62.729	63.666	0					51	24	3	0	0	0	0.024506	1	7311	7311		30.504	0	1	331470			53645	7647	37454	37515	58854	58854					0.03731260122299318
NIIQQAVYP	9	Unmodified	_NIIQQAVYP_					0	0	0		ENST00000264645.11_1_17:38327543-38327843:+|nuORF	ENST00000264645.11_1_17:38327543-38327843:+|nuORF	ENST00000264645.11_1_17:38327543-38327843:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3106689453125	2	523.287474	1044.5604	-0.82716	-0.00043284	-4.0256	-0.0021066	-4.8528	-0.0025394	523.2862206009078	60.684	0.22068	60.47	60.384	60.604	-0.21339					6	5	2	0	0	0	0.024412	1	6961	6961		40.573	29.062	1	81870			53646	11565	37455	37516	58855	58855					0.03989742960266085
NIIQVTIPD	9	Unmodified	_NIIQVTIPD_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.26605224609375	2	506.787307	1011.56006	-0.91319	-0.00046279	0.51557	0.00026128	-0.39762	-0.00020151	506.78758869930806	62.931	0.4711	62.931	62.69	63.161	0					16	11	2	0	0	0	0.023837	1	7303	7303		23.523	0	1	287950			53647	10961	37456	37517	58856	58856					0.05474323240423473
NIISYDHSR	9	Unmodified	_NIISYDHSR_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7559204101562	2	552.775262	1103.53597	-0.29332	-0.00016214	-0.30872	-0.00017065	-0.60203	-0.00033279	552.7749144991662	26.467	0.70409	26.299	26.019	26.723	-0.16816					21	12	2	0	0	0	0.024495	1	1404	1404		26.693	10.22	1	384350			53648	9818	37457	37518	58857	58857					-0.011655171932488884
NIISYDHSR	9	Unmodified	_NIISYDHSR_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.775262	1103.53597	-0.22568	-0.00012475	-0.093401	-5.163E-05	-0.31908	-0.00017638	552.7751557139984	26.543	0.62694	26.543	26.324	26.951	0	0.079804	-0.00013767	NaN	12.812	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127320			53649	9818	37457	37518							-0.011655171932488884
NIISYDHSR	9	Unmodified	_NIISYDHSR_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.775262	1103.53597	-0.80178	-0.0004432	0.63388	0.00035039	-0.16789	-9.2807E-05	552.7754016050711	26.597	0.45262	26.574	26.324	26.776	-0.023087	0.11131	0.00066638	NaN	12.812	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93527			53650	9818	37457	37518							-0.011655171932488884
NIISYDHSR	9	Unmodified	_NIISYDHSR_					0	0	0		ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	ENSG00000196090|ENST00000373187|PTPRT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	552.775262	1103.53597	-0.49564	-0.00027398	0.14525	8.0292E-05	-0.35039	-0.00019368	552.7752433764047	26.354	0.55014	26.435	26.249	26.799	0.081293	-0.027488	0.00012618	NaN	12.812	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104690			53651	9818	37457	37518							-0.011655171932488884
NIKDLNLT	8	Unmodified	_NIKDLNLT_					0	0	0			REV__nc|ENSG00000172955|P28332|ADH6	REV__nc|ENSG00000172955|P28332|ADH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.77752685546875	2	465.766374	929.518196	0.12668	5.9003E-05	0.27054	0.00012601	0.39722	0.00018501	465.7662882112169	49.533	0.51844	49.533	49.249	49.768	0					25	13	3	0	0	0	0.027866	1	5093	5093		23.042	0	1	433930	+		53652	26725	37458	37519	58858	58858					0.05061767551887897
NIKEDPSAAEA	11	Unmodified	_NIKEDPSAAEA_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	573.3601684570312	2	572.777667	1143.54078	-0.41429	-0.0002373	2.3036	0.0013195	1.8893	0.0010822	572.7789100334033	52.556	0.53938	52.648	52.363	52.902	0.091938					21	13	2	0	0	0	0.024787	1	5539	5539		33.922	3.6039	1	297870			53653	6570	37459	37520	58859	58859					-0.02524677841142875
NIKEDPSAAEA	11	Unmodified	_NIKEDPSAAEA_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	572.777667	1143.54078	-1.159	-0.00066387	3.3185	0.0019008	2.1595	0.0012369	572.7795427955979	52.719	0.4665	52.719	52.472	52.938	0	0.054614	0.00070815	NaN	33.922	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184450			53654	6570	37459	37520							-0.02524677841142875
NIKEKTRL	8	Unmodified	_NIKEKTRL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.3084716796875	2	501.308741	1000.60293	0.36331	0.00018213	-0.93362	-0.00046803	-0.5703	-0.0002859	501.3081616442008	21.41	0.72216	21.233	20.918	21.64	-0.17721					33	14	3	0	0	0	0.5947	1	672	672		76.774	5.4784	1	715790			53655	5648	37460	37521	58860	58860					0.10265138088516323
NIKEKTRL	8	Unmodified	_NIKEKTRL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3087158203125	2	501.308741	1000.60293	-0.059795	-2.9976E-05	-0.32855	-0.00016471	-0.38835	-0.00019468	501.3084388248307	21.557	0.72547	21.366	21.128	21.853	-0.19072					37	14	4	0	0	0	0.89627	1	667	667		51.335	5.3632	1	547120			53656	5648	37460	37521	58861	58861					0.10265138088516323
NIKEKTRL	8	Unmodified	_NIKEKTRL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	501.308741	1000.60293	-1.5723	-0.00078819	1.0113	0.00050699	-0.56094	-0.0002812	501.30910148041846	21.549	0.72948	21.336	21.02	21.749	-0.2128	0.024449	0.0011487	NaN	76.774	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667860			53657	5648	37460	37521							0.10265138088516323
NIKFTKTIN	9	Unmodified	_NIKFTKTIN_					0	0	0			REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7989501953125	2	539.816399	1077.61824	-0.78355	-0.00042297	-2.7582	-0.0014889	-3.5417	-0.0019119	539.815000486487	70.518	0.21334	70.53	70.424	70.637	0.012413					6	4	2	0	0	0	0.024523	1	8438	8438		10.265	0	1	138630	+		53658	19269	37461	37522	58862	58862					0.08254004885725408
NIKGGPQSLV	10	Unmodified	_NIKGGPQSLV_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.74530029296875	2	506.792924	1011.57129	-0.34145	-0.00017305	1.1463	0.00058094	0.80486	0.0004079	506.7936425663981	82.03	0.87981	82.056	81.779	82.658	0.025711					44	20	3	0	0	0	0.03519	1	10135	10135		110.12	38.242	1	253090			53659	5635	37462	37523	58863	58863					0.06597145334581
NIKILGNVK	9	Unmodified	_NIKILGNVK_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2079162597656	2	499.821484	997.628415	-0.10796	-5.3961E-05	-2.0875	-0.0010434	-2.1954	-0.0010973	499.8215083444448	42.945	0.41993	42.832	42.614	43.034	-0.11253					15	10	2	0	0	0	0.02435	1	3896	3896		19.997	5.1319	1	200240	+		53660	19848	37463	37524	58864	58864					0.1295061261095043
NIKKKAGEP	9	Unmodified	_NIKKKAGEP_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7759094238281	2	492.795466	983.57638	-1.0793	-0.00053186	0.18729	9.2297E-05	-0.89197	-0.00043956	492.7953869219072	51.474	0.69872	51.561	51.227	51.926	0.087006					37	19	2	0	0	0	0.024436	1	5402	5402		30.504	13.139	1	1452300	+	+	53661	19605	37464	37525	58865	58865					0.08393449197183145
NIKKKQEAL	9	Unmodified	_NIKKKQEAL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.329345703125	2	536.329673	1070.64479	0.2552	0.00013687	-1.1829	-0.00063442	-0.92769	-0.00049755	536.3290875108421	18.974	1.6147	18.813	18.589	20.204	-0.16079					74	32	5	0	0	0	0.10174	1	359	359		110.12	3.1124	1	7859700			53662	10033	37465	37526	58866	58866					0.11229693777045213
NIKKKQEAL	9	Unmodified	_NIKKKQEAL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3295288085938	2	536.329673	1070.64479	1.5633	0.00083843	-2.3342	-0.0012519	-0.77095	-0.00041348	536.3284676516844	19.038	1.3354	18.805	18.533	19.868	-0.23345					74	26	5	0	0	0	0.20967	1	339	339		87.754	2.8388	1	7075300			53663	10033	37465	37526	58867	58867					0.11229693777045213
NIKKQGQV	8	Unmodified	_NIKKQGQV_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;NCKAP1-PARD3|4|fusion;NCKAP1-PARD3|6|fusion;NCKAP1-PARD3|5|fusion	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2710876464844	2	457.774534	913.534515	-0.45191	-0.00020687	-2.5178	-0.0011526	-2.9697	-0.0013595	457.7733213086337	43.487	0.54783	43.347	43.027	43.575	-0.13929					30	14	3	0	0	0	0.027866	1	4052	4052		26.796	1.3459	1	1359500			53664	18056	37466	37527	58868	58868					0.07428893508676992
NIKKTLSLR	9	Unmodified	_NIKKTLSLR_					0	0	0		ENSG00000154839|ENST00000285116|SKA1;ENST00000488454.5_1_18:47902200-47908506:+|nuORF;nc|ENSG00000154839|Q96BD8-2|SKA1	ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.84549	1071.67643	0.16459	8.836E-05	2.6439	0.0014194	2.8085	0.0015077	536.84650133139	19.083	0.29585	18.88	18.658	18.954	-0.20371					8	5	2	0	0	0	0.023842	1	369	369		77.318	18.536	1	51647			53665	6438	37467	37528	58869	58869					0.14345686530987223
NIKLGPALMI	10	Unmodified	_NIKLGPALMI_					0	0	0		PHC1|p.K993M|1|0.52|ENSG00000111752|chr12:8939422-8939422|A/T|missense_variant	PHC1|p.K993M|1|0.52|ENSG00000111752|chr12:8939422-8939422|A/T|missense_variant	PHC1|p.K993M|1|0.52|ENSG00000111752|chr12:8939422-8939422|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.3261108398438	2	535.325545	1068.63654	-0.36594	-0.0001959	0.11118	5.9519E-05	-0.25475	-0.00013638	535.3254181256325	77.973	1.0209	77.711	77.399	78.42	-0.26202					45	23	3	0	0	0	0.82838	1	9285	9285		58.782	4.0056	1	1190000			53666	18961	37468	37529	58870	58870					0.10496423536051225
NIKLIDFGL	9	Unmodified	_NIKLIDFGL_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2955322265625	2	516.808042	1031.60153	0.13682	7.0709E-05	-0.32562	-0.00016828	-0.1888	-9.7574E-05	516.8076324516464	37.129	0.45676	36.936	36.812	37.269	-0.193					15	11	2	0	0	0	0.024466	1	2958	2958		7.1934	0	1	137560			53667	5537	37469	37530	58871	58871					0.08699503999764602
NIKLITFLI	9	Unmodified	_NIKLITFLI_					0	0	0			REV__ENSG00000181767|ENST00000313503|OR8H2	REV__ENSG00000181767|ENST00000313503|OR8H2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7965698242188	2	537.84971	1073.68487	-1.0857	-0.00058393	-0.5314	-0.00028581	-1.6171	-0.00086975	537.848986780445	78.036	0.24903	78.052	77.905	78.155	0.015907					8	5	2	0	0	0	0.024523	1	9566	9566		21.96	0	1	67677	+		53668	27422	37470	37531	58872	58872					0.15097240447607874
NIKLVKFLL	9	Unmodified	_NIKLVKFLL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-5|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-16|ANK1	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.3048095703125	2	544.365527	1086.7165	-1.2966	-0.00070585	0.70582	0.00038422	-0.59083	-0.00032163	544.3657084552221	60.821	0.48952	60.608	60.384	60.873	-0.2134					29	12	3	0	0	0	0.024541	1	6949	6949		16.473	0	1	343200			53669	18041	37471	37532	58873	58873					0.1766123320155657
NIKLVKFLL	9	Unmodified	_NIKLVKFLL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-5|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-16|ANK1	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	544.365527	1086.7165	-1.4285	-0.0007776	0.72911	0.0003969	-0.69935	-0.0003807	544.3657626456004	60.583	0.51497	60.583	60.33	60.845	0	-0.010421	-0.00033409	NaN	21.96	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270780			53670	18041	37471	37532							0.1766123320155657
NIKLVKFLL	9	Unmodified	_NIKLVKFLL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-5|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-16|ANK1	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.365527	1086.7165	-2.3299	-0.0012683	1.9545	0.0010639	-0.37547	-0.00020439	544.3662957976541	60.511	0.52569	60.59	60.392	60.918	0.078888	-0.0036347	0.001	NaN	21.96	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256970			53671	18041	37471	37532							0.1766123320155657
NIKNCLKIE	9	Carbamidomethyl (C)	_NIKNC(Carbamidomethyl (C))LKIE_	NIKNC(1)LKIE		NIKNC(120)LKIE		0	1	0		nc|ENSG00000170632|Q8N2F6-6|ARMC10;nc|ENSG00000170632|Q8N2F6-4|ARMC10;nc|ENSG00000170632|Q8N2F6-5|ARMC10;nc|ENSG00000170632|Q8N2F6-3|ARMC10;nc|ENSG00000170632|Q8N2F6-2|ARMC10;ARMC10|p.F310Sfs*12|1|0.3|ENSG00000170632|chr7:103098446-103098446|T/-|frameshift_variant;ENSG00000170632|ENST00000323716|ARMC10	nc|ENSG00000170632|Q8N2F6-6|ARMC10	nc|ENSG00000170632|Q8N2F6-6|ARMC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.3130493164062	2	566.313166	1130.61178	-0.026027	-1.474E-05	0.014078	7.9725E-06	-0.011949	-6.767E-06	566.3130223183751	34.761	1.0256	34.545	34.15	35.176	-0.21556					70	25	4	0	0	0	0.06122	1	2582	2582		124.59	7.6907	1	2867400			53672	131	37472	37533	58874	58874	1				0.05169743662668225
NIKNKRMV	8	Unmodified	_NIKNKRMV_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7974853515625	2	501.797486	1001.58042	-0.76191	-0.00038233	0.27258	0.00013678	-0.48933	-0.00024555	501.79745023381787	38.561	0.75866	38.561	38.247	39.006	0					48	19	4	0	0	0	1.0239	1	3255	3255		33.516	1.5607	1	5240500	+		53673	26577	37473	37534	58875	58875					0.07969215419257125
NIKNKRMV	8	Unmodified	_NIKNKRMV_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.79736328125	2	501.797486	1001.58042	-0.62261	-0.00031243	-0.016275	-8.1667E-06	-0.63889	-0.00032059	501.7973681639872	38.545	0.88351	38.462	38.116	38.999	-0.082516					60	23	4	0	0	0	1.0574	1	3237	3237		25.45	2.4077	1	5114600	+		53674	26577	37473	37534	58876	58876					0.07969215419257125
NIKNVVRM	8	Unmodified	_NIKNVVRM_					0	0	0		nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2919921875	2	487.284211	972.55387	-0.77728	-0.00037875	-2.3931	-0.0011661	-3.1704	-0.0015449	487.28181934293804	81.926	0.2459	81.952	81.819	82.065	0.025711					10	5	3	0	0	0	0.027866	1	10132	10132		42.474	17.024	1	165480			53675	2224	37474	37535	58877	58877					0.06649526527928629
NIKPFDCF	8	Unmodified	_NIKPFDCF_					0	0	0			REV__nc|ENSG00000080910|P36980-2|CFHR2	REV__nc|ENSG00000080910|P36980-2|CFHR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2986145019531	2	492.236396	982.458238	-0.84426	-0.00041558	1.4842	0.00073057	0.63992	0.00031499	492.23684892628285	60.868	0.92436	60.692	60.198	61.122	-0.1761					39	22	3	0	0	0	0.027866	1	6746	6746		52.299	13.278	1	372720	+		53676	20668	37475	37536	58878	58878					-0.033692463829765984
NIKQKMQEL	9	Unmodified	_NIKQKMQEL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.3131713867188	2	566.313166	1130.61178	-0.026027	-1.474E-05	0.014078	7.9725E-06	-0.011949	-6.767E-06	566.3130223183751	34.761	1.0256	34.545	34.15	35.176	-0.21556					70	25	4	0	0	0	0.057894	2	2591	2591;2605		125.81	5.3685	1	2867400			53677	896	37476	37537	58879;58880	58879					0.05169743662690962
NIKQKMQEL	9	Unmodified	_NIKQKMQEL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.3131713867188	2	566.313166	1130.61178	-0.1982	-0.00011224	0.056884	3.2214E-05	-0.14132	-8.003E-05	566.3130422069984	34.611	0.96185	34.404	34.082	35.043	-0.20696					68	23	4	0	0	0	0.016758	3	2550	2550;2560;2573		153.04	28.442	1	2953200			53678	896	37476	37537	58881;58882;58883	58881					0.05169743662690962
NIKQKMQEL	9	Unmodified	_NIKQKMQEL_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN;ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.3131713867188	2	566.313166	1130.61178	-0.5506	-0.00031181	0.49189	0.00027856	-0.058711	-3.3249E-05	566.3132718329502	34.672	1.0637	34.489	34.161	35.224	-0.18293					70	26	4	0	0	0	0.091713	2	2556	2556;2567		113.41	22.635	1	2849800			53679	896	37476	37537	58884;58885	58884					0.05169743662690962
NIKRKVTSV	9	Unmodified	_NIKRKVTSV_					0	0	0		HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1;ENST00000532338.5_1_8:145533073-145533583:+|nuORF	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.8297119140625	2	522.82984	1043.64513	-1.3257	-0.00069312	0.75878	0.00039671	-0.56693	-0.00029641	522.8301499961635	21.405	0.58416	21.192	20.971	21.555	-0.2128					30	11	4	0	0	0	0.30449	1	640	640		75.043	34.985	1	557010			53680	9411	37477	37538	58886	58886					0.1250511349687713
NIKTGQRGII	10	Unmodified	_NIKTGQRGII_					0	0	0			REV__nc|ENSG00000183570|P57721-2|PCBP3	REV__nc|ENSG00000183570|P57721-2|PCBP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.7405395507812	2	550.332747	1098.65094	-0.67456	-0.00037123	4.0736	0.0022418	3.399	0.0018706	550.3348500308252	43.002	0.7618	42.776	42.336	43.097	-0.22597					41	19	3	0	0	0	0.03519	1	3876	3876		42.864	0	1	595490	+		53681	27583	37478	37539	58887	58887					0.10556212008577859
NIKTKVAVL	9	Unmodified	_NIKTKVAVL_					0	0	0		nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;DAAM1|p.F380Sfs*26|1|0.12|ENSG00000100592|chr14:59326040-59326040|T/-|frameshift_variant	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.32421875	2	493.32386	984.633166	-1.5872	-0.00078301	1.2986	0.00064061	-0.28865	-0.0001424	493.32428995260227	38.711	1.1241	38.547	38.218	39.342	-0.16458					57	30	4	0	0	0	0.32811	1	3224	3224		71.877	7.6702	1	1558800			53682	2224	37479	37540	58888	58888					0.14023496753691234
NIKTKVAVL	9	Unmodified	_NIKTKVAVL_					0	0	0		nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;DAAM1|p.F380Sfs*26|1|0.12|ENSG00000100592|chr14:59326040-59326040|T/-|frameshift_variant	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.32386	984.633166	-0.5861	-0.00028914	0.21346	0.0001053	-0.37264	-0.00018383	493.32379726575124	38.827	0.74075	38.605	38.333	39.074	-0.22182	0.019699	-2.562E-05	NaN	71.877	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1322900			53683	2224	37479	37540							0.14023496753691234
NIKTKVAVL	9	Unmodified	_NIKTKVAVL_					0	0	0		nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;DAAM1|p.F380Sfs*26|1|0.12|ENSG00000100592|chr14:59326040-59326040|T/-|frameshift_variant	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.32386	984.633166	-0.042284	-2.086E-05	-0.41465	-0.00020456	-0.45693	-0.00022542	493.32347002097885	38.83	1.0754	38.604	38.32	39.395	-0.2257	0.018954	-0.00064534	NaN	71.877	54	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1263700			53684	2224	37479	37540							0.14023496753691234
NIKVPKISM	9	Unmodified	_NIKVPKISM_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.832275390625	2	515.309895	1028.60524	0.9289	0.00047867	2.6872	0.0013848	3.6161	0.0018634	515.3111188499075	17.984	0.34834	17.827	17.605	17.953	-0.15628					11	6	3	0	0	0	0.024539	1	257	257		5.5578	0	1	61754			53685	4084	37480	37541	58889	58889					0.09207850501957182
NILARLNTN	9	Unmodified	_NILARLNTN_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3;REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1;REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8245849609375	2	514.795998	1027.57744	-0.053401	-2.7491E-05	3.2562	0.0016763	3.2028	0.0016488	514.796620715947	39.517	0.76743	39.517	39.148	39.915	0					52	21	4	0	0	0	0.024418	1	3411	3411		37.812	13.292	1	458980	+		53686	24084;19179;24302	37481	37542	58890	58890					0.0647566356610696
NILARLNTN	9	Unmodified	_NILARLNTN_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3;REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1;REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.795998	1027.57744	-0.45466	-0.00023405	1.8906	0.00097325	1.4359	0.0007392	514.7968899078859	39.488	0.60944	39.323	39.044	39.653	-0.16458	-0.11071	-0.00042012	NaN	45.972	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523980	+		53687	24084;19179;24302	37481	37542							0.0647566356610696
NILARLNTN	9	Unmodified	_NILARLNTN_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3;REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1;REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.795998	1027.57744	-0.37118	-0.00019108	2.1246	0.0010937	1.7534	0.00090263	514.7969227699527	39.632	0.62531	39.409	39.149	39.775	-0.22311	-0.024725	-0.0001792	NaN	45.972	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463690	+		53688	24084;19179;24302	37481	37542							0.0647566356610696
NILARLNTN	9	Unmodified	_NILARLNTN_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3;REV__nc|ENSG00000171456|Q8IXJ9-2|ASXL1;REV__nc|ENSG00000143970|Q76L83-2|ASXL2	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.795998	1027.57744	-0.016505	-8.4969E-06	1.4178	0.00072987	1.4013	0.00072138	514.7966420317048	39.654	0.64318	39.424	39.128	39.771	-0.23021	-0.01001	-0.00090688	NaN	45.972	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531750	+		53689	24084;19179;24302	37481	37542							0.0647566356610696
NILDRLISV	9	Unmodified	_NILDRLISV_					0	0	0			REV__nc|ENSG00000101109|Q13043-2|STK4	REV__nc|ENSG00000101109|Q13043-2|STK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7971801757812	2	521.816399	1041.61824	-0.60891	-0.00031774	0.2557	0.00013343	-0.35321	-0.00018431	521.8162806096152	44.6	0.40647	44.356	44.151	44.557	-0.2444					15	10	2	0	0	0	0.024477	1	4183	4183		27.882	0	1	111000	+		53690	21184	37482	37543	58891	58891					0.09910004885705348
NILDSHAA	8	Unmodified	_NILDSHAA_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.7381896972656	2	420.714142	839.413731	-0.49174	-0.00020688	1.623	0.00068281	1.1312	0.00047592	420.7160074210751	23.389	0.15631	23.328	23.19	23.347	-0.060862					6	3	2	0	0	0	0.027866	1	896	896		53.351	30.309	1	36776			53691	11066	37483	37544	58892	58892					-0.012399342048070139
NILEKVVL	8	Unmodified	_NILEKVVL_					0	0	0		ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.29638671875	2	464.29731	926.580068	-0.55673	-0.00025849	0.44903	0.00020848	-0.1077	-5.0005E-05	464.2973393168139	65.502	0.93868	65.251	64.986	65.925	-0.25112					45	22	3	0	0	0	0.47727	1	7470	7470		87.696	5.3914	1	1672000			53692	6551	37484	37545	58893	58893					0.1138411897103424
NILGRKIV	8	Unmodified	_NILGRKIV_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7684326171875	2	456.803094	911.591636	-0.18905	-8.6359E-05	0.19584	8.946E-05	0.0067885	3.101E-06	456.8029612678756	36.161	1.7899	36.161	35.769	37.559	0					73	48	3	0	0	0	0.027866	1	2967	2967		25.45	0	1	635210			53693	7832;10551	37485	37546	58894	58894					0.1323036078504174
NILGRKIV	8	Unmodified	_NILGRKIV_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.803094	911.591636	-0.19067	-8.7101E-05	0.19724	9.0099E-05	0.0065639	2.9984E-06	456.80309554294365	36.359	1.0096	36.154	35.752	36.762	-0.20518	0.02327	0.00023752	NaN	18.324	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603980			53694	7832;10551	37485	37546							0.1323036078504174
NILGRKIV	8	Unmodified	_NILGRKIV_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.803094	911.591636	0.086148	3.9353E-05	-0.10521	-4.8058E-05	-0.019057	-8.7054E-06	456.80292315924703	36.352	1.3103	36.135	35.845	37.155	-0.21661	0.004477	-3.8791E-05	NaN	18.324	50	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679790			53695	7832;10551	37485	37546							0.1323036078504174
NILGRKIV	8	Unmodified	_NILGRKIV_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1;ENSG00000214338|ENST00000525778|SOGA3	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.803094	911.591636	1.3926	0.00063616	-1.6644	-0.00076029	-0.27175	-0.00012414	456.8022321009833	36.34	1.3394	36.142	35.708	37.048	-0.19829	0.011445	-0.0014633	NaN	18.324	63	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678520			53696	7832;10551	37485	37546							0.1323036078504174
NILGRPQL	8	Unmodified	_NILGRPQL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2430114746094	2	455.777077	909.5396	-0.23866	-0.00010877	0.30885	0.00014076	0.07019	3.1991E-05	455.7768688967839	36.623	0.46059	36.661	36.301	36.762	0.038044					18	12	2	0	0	0	0.027866	1	2837	2837		33.516	9.3128	1	63455	+		53697	21363	37486	37547	58895	58895					0.08121197371269773
NILGRPQL	8	Unmodified	_NILGRPQL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.777077	909.5396	0.45824	0.00020885	-0.63579	-0.00028978	-0.17755	-8.0923E-05	455.7766538406493	37.024	0.34156	36.831	36.697	37.039	-0.193	0.065977	-1.9587E-05	NaN	47.916	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88195	+		53698	21363	37486	37547							0.08121197371269773
NILGRPQL	8	Unmodified	_NILGRPQL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	455.777077	909.5396	0.78195	0.00035639	-1.6266	-0.00074138	-0.84468	-0.00038499	455.7757835702918	37.012	0.55408	36.803	36.445	36.999	-0.2092	0.037708	-0.00092279	NaN	47.916	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75581	+		53699	21363	37486	37547							0.08121197371269773
NILHLPVVK	9	Unmodified	_NILHLPVVK_					0	0	0			REV__ENST00000271375.6_1_1:168221476-168221560:+|nuORF	REV__ENST00000271375.6_1_1:168221476-168221560:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7803344726562	2	516.831852	1031.64915	-1.2499	-0.00064601	0.61482	0.00031776	-0.63512	-0.00032825	516.8318757176872	44.447	0.63602	44.447	44.089	44.725	0					31	18	2	0	0	0	0.024457	1	4259	4259		37.159	9.2769	1	170050	+		53700	29802	37487	37548	58896	58896					0.1345920299061163
NILIDVIFMID	11	Unmodified	_NILIDVIFMID_					0	0	0			REV__nc|ENSG00000055118|Q12809-4|KCNH2	REV__nc|ENSG00000055118|Q12809-4|KCNH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.25152587890625	3	435.908947	1304.70501	-0.27907	-0.00012165	-4.1302	-0.0018004	-4.4093	-0.0019221	435.90761864377424	78.208	0.12973	77.949	77.865	77.994	-0.25865					4	2	2	0	0	0	0.024757	1	9309	9309		20.315	3.1483	1	21340	+		53701	20199	37488	37549	58897	58897					0.06484623325263783
NILKEVVL	8	Unmodified	_NILKEVVL_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.29730224609375	2	464.29731	926.580068	-0.2132	-9.8987E-05	0.21311	9.8948E-05	-8.4638E-05	-3.9297E-08	464.297257107157	65.51	1.1431	65.269	65.004	66.148	-0.24144					55	27	4	0	0	0	0.56311	1	7479	7479		79.713	2.395	1	1662700	+		53702	20350	37489	37550	58898	58898					0.1138411897103424
NILKFFGYCND	11	Unmodified	_NILKFFGYCND_					0	0	0		ENST00000569187.5_1_16:81009989-81040353:-|nuORF;ENST00000570086.5_1_16:81009992-81030554:-|nuORF;ENSG00000103121|ENST00000219400|CMC2	ENST00000569187.5_1_16:81009989-81040353:-|nuORF	ENST00000569187.5_1_16:81009989-81040353:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.7456970214844	3	445.213029	1332.61726	-0.20889	-9.3001E-05	-0.40157	-0.00017878	-0.61046	-0.00027179	445.2126900729536	24.785	0.61128	24.61	24.296	24.907	-0.17484					21	13	2	0	0	0	0.024723	1	1079	1079		19.627	8.1723	1	189120			53703	2470	37490	37551	58899	58899					-0.035745775454870454
NILKKKLD	8	Unmodified	_NILKKKLD_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7477722167969	2	486.316035	970.617516	0.30618	0.0001489	-0.30232	-0.00014702	0.0038637	1.879E-06	486.3157135173837	69.886	0.61594	69.664	69.432	70.048	-0.22245					33	14	3	0	0	0	0.027866	1	8143	8143		40.573	0	1	577430	+		53704	23832;36707	37491	37552	58900	58900					0.13103210236658924
NILKTIAL	8	Unmodified	_NILKTIAL_					0	0	0		nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.1888122558594	2	443.292028	884.569503	-0.30622	-0.00013574	0.63946	0.00028347	0.33324	0.00014772	443.29215276761806	33.312	1.0531	33.112	32.813	33.866	-0.20019					60	26	4	0	0	0	0.027866	1	2356	2356		55.504	0	1	3139800			53705	3053	37492	37553	58901	58901					0.12260136316592707
NILKTIAL	8	Unmodified	_NILKTIAL_					0	0	0		nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.292028	884.569503	-0.41105	-0.00018221	0.38023	0.00016855	-0.03082	-1.3662E-05	443.2920629065981	33.439	0.79765	33.439	33.174	33.972	0	0.18094	-2.6336E-05	NaN	55.504	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316360			53706	3053	37492	37553							0.12260136316592707
NILKTIAL	8	Unmodified	_NILKTIAL_					0	0	0		nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.292028	884.569503	-0.38913	-0.0001725	0.5389	0.00023889	0.14977	6.6391E-05	443.2921241304642	33.386	0.87902	33.392	33.08	33.959	0.0066261	0.13442	0.00011434	NaN	55.504	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312340			53707	3053	37492	37553							0.12260136316592707
NILKTIAL	8	Unmodified	_NILKTIAL_					0	0	0		nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	nc|ENSG00000110660|Q8IXU6-2|SLC35F2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.292028	884.569503	0.5202	0.0002306	-0.35277	-0.00015638	0.16743	7.4218E-05	443.2917325046894	33.341	0.86134	33.397	33.07	33.931	0.056572	0.13921	-0.0006762	NaN	55.504	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293700			53708	3053	37492	37553							0.12260136316592707
NILLDYTL	8	Unmodified	_NILLDYTL_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43;nc|ENSG00000197748|Q8NDM7-5|CFAP43;nc|ENSG00000197748|Q8NDM7-4|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7712707519531	2	482.771126	963.527698	0.5214	0.00025172	2.0103	0.0009705	2.5317	0.0012222	482.7708438563062	95.892	1.1842	95.894	95.567	96.751	0.0020752					69	27	4	0	0	0	0.96769	1	12157	12157		42.396	5.237	1	1313900			53709	10044	37493	37554	58902	58902					0.04447535837425676
NILLYFPNG	9	Unmodified	_NILLYFPNG_					0	0	0		ENST00000468398.1_1_3:149047933-149051100:-|nuORF;ENST00000491182.1_1_3:149042665-149051366:-|nuORF;ENSG00000163762|ENST00000296059|TM4SF18;ENSG00000169908|ENST00000305366|TM4SF1	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2860717773438	2	525.784567	1049.55458	-0.20352	-0.00010701	-3.8815	-0.0020409	-4.0851	-0.0021479	525.7823617830354	55.051	0.77731	54.82	54.351	55.128	-0.23087					48	21	4	0	0	0	0.024506	1	5821	5821		30.504	15.84	1	899460			53710	7141	37494	37555	58903	58903					0.031786444485987886
NILLYFPNG	9	Unmodified	_NILLYFPNG_					0	0	0		ENST00000468398.1_1_3:149047933-149051100:-|nuORF;ENST00000491182.1_1_3:149042665-149051366:-|nuORF;ENSG00000163762|ENST00000296059|TM4SF18;ENSG00000169908|ENST00000305366|TM4SF1	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.784567	1049.55458	-0.72776	-0.00038265	-3.3549	-0.0017639	-4.0826	-0.0021466	525.7827344889283	54.949	1.0507	54.803	54.495	55.546	-0.14609	-0.0054836	0.0008167	NaN	10.866	54	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857780			53711	7141	37494	37555							0.031786444485987886
NILLYFPNG	9	Unmodified	_NILLYFPNG_					0	0	0		ENST00000468398.1_1_3:149047933-149051100:-|nuORF;ENST00000491182.1_1_3:149042665-149051366:-|nuORF;ENSG00000163762|ENST00000296059|TM4SF18;ENSG00000169908|ENST00000305366|TM4SF1	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	ENST00000468398.1_1_3:149047933-149051100:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.784567	1049.55458	0.45213	0.00023772	-4.7909	-0.002519	-4.3387	-0.0022812	525.781946359513	55.008	0.67497	54.802	54.502	55.177	-0.20613	-0.0062653	-0.00069336	NaN	10.866	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	882600			53712	7141	37494	37555							0.031786444485987886
NILNLAKLS	9	Unmodified	_NILNLAKLS_					0	0	0			REV__nc|ENSG00000064655|O00167-2|EYA2	REV__nc|ENSG00000064655|O00167-2|EYA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.78326416015625	2	493.305667	984.596781	-0.4157	-0.00020506	1.6368	0.00080743	1.2211	0.00060237	493.3058596167584	77.845	0.93559	77.583	77.141	78.077	-0.26202					46	21	3	0	0	0	0.024405	1	9327	9327		44.117	0	1	766900	+		53713	20290	37495	37556	58904	58904					0.10386619857001733
NILNTQLLL	9	Unmodified	_NILNTQLLL_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.31884765625	2	521.318774	1040.623	0.29593	0.00015428	-0.84902	-0.00044261	-0.55308	-0.00028833	521.3182613113577	85.764	1.3179	85.764	85.457	86.775	0					77	30	4	0	0	0	0.19099	1	10774	10774		90.37	2.6734	1	1752000	+		53714	28147	37496	37557	58905	58905					0.10430889028475576
NILNVLKT	8	Unmodified	_NILNVLKT_					0	0	0		sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2703857421875	2	457.78711	913.559667	0.53577	0.00024527	-0.29981	-0.00013725	0.23596	0.00010802	457.78664556235225	43.42	0.43566	43.451	43.229	43.664	0.030827					20	11	3	0	0	0	0.027866	1	3991	3991		17.365	0	1	368890			53715	37914	37497	37558	58906	58906					0.09942948311231703
NILNVLKT	8	Unmodified	_NILNVLKT_					0	0	0		sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.78711	913.559667	-0.65967	-0.00030199	0.28926	0.00013242	-0.37041	-0.00016957	457.7871989343002	43.516	0.50204	43.278	43.061	43.563	-0.23736	-0.050847	5.4563E-05	NaN	11.511	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532680			53716	37914	37497	37558							0.09942948311231703
NILNVLKT	8	Unmodified	_NILNVLKT_					0	0	0		sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	sp|P03114|VE1_HPV16ReplicationproteinE1OS=Humanpapillomavirustype16OX=333760GN=E1PE=1SV=2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.78711	913.559667	-0.77734	-0.00035585	0.42739	0.00019565	-0.34995	-0.0001602	457.78709809925124	43.485	0.35133	43.259	43.097	43.449	-0.22597	-0.070614	0.00018104	NaN	11.511	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461840			53717	37914	37497	37558							0.09942948311231703
NILQLANLP	9	Unmodified	_NILQLANLP_					0	0	0		nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1	nc|ENSG00000076242|P40692-2|MLH1	nc|ENSG00000076242|P40692-2|MLH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2996826171875	2	498.297842	994.581131	-0.074409	-3.7078E-05	3.4568	0.0017225	3.3824	0.0016855	498.29936600810214	81.796	0.64354	81.666	81.42	82.064	-0.13075					36	15	3	0	0	0	0.024021	1	10212	10212		32.812	1.2826	1	326040			53718	1578	37498	37559	58907	58907					0.08362333339937322
NILRITTK	8	Unmodified	_NILRITTK_					0	0	0			REV__ST6GAL1|p.M232I|1|0.1|ENSG00000073849|chr3:187051337-187051337|G/A|missense_variant	REV__ST6GAL1|p.M232I|1|0.1|ENSG00000073849|chr3:187051337-187051337|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.79254150390625	2	479.805834	957.597115	-0.0039999	-1.9192E-06	-0.69975	-0.00033575	-0.70375	-0.00033766	479.8052005190531	30.519	0.45929	30.275	30.035	30.494	-0.24415					23	10	3	0	0	0	0.027866	1	1969	1969		44.117	0	1	318800	+		53719	37582	37499	37560	58908	58908					0.1166203957683365
NILRTGLNSE	10	Unmodified	_NILRTGLNSE_					0	0	0		HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|39|3|anti-sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|39|3|anti-sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|39|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.8037109375	2	558.80402	1115.59349	-0.98254	-0.00054905	0.21159	0.00011824	-0.77094	-0.00043081	558.8040956722554	48.808	1.0189	48.707	48.358	49.377	-0.1008					79	26	5	0	0	0	0.80817	1	4853	4853		60.118	1.3363	1	7840100			53720	17718	37500	37561	58909	58909					0.040313250123290345
NILSVVVEG	9	Unmodified	_NILSVVVEG_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3	REV__ENSG00000053747|ENST00000313654|LAMA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.7706604003906	2	465.26875	928.522947	-0.73606	-0.00034246	-0.66674	-0.00031021	-1.4028	-0.00065268	465.26800635857995	44.128	0.31556	44.023	43.853	44.168	-0.10468					14	8	2	0	0	0	0.024495	1	4075	4075		34.173	12.213	1	325000	+		53721	20182	37501	37562	58910	58910					0.05582651694669494
NILVNVGV	8	Unmodified	_NILVNVGV_					0	0	0		nc|ENSG00000151812|A4IF30-2|SLC35F4;ENSG00000151812|ENST00000556826|SLC35F4;nc|ENSG00000151812|A4IF30|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2406005859375	2	414.252903	826.491253	-0.69454	-0.00028772	0.53246	0.00022057	-0.16208	-6.7142E-05	414.25291402011317	34.515	0.79091	34.565	34.047	34.838	0.050251					31	19	3	0	0	0	0.027866	1	2453	2453		23.042	10.083	1	184190			53722	6232	37502	37563	58911	58911					0.07106703731381003
NILYDKQAL	9	Unmodified	_NILYDKQAL_					0	0	0		ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	ENST00000367603.7_2_6:143092324-143092522:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7985229492188	2	539.300581	1076.58661	0.27966	0.00015082	-0.38763	-0.00020905	-0.10798	-5.8231E-05	539.3003455643237	97.131	0.13248	97.131	97.058	97.191	-3.0518E-05					4	2	2	0	0	0	0.024427	1	12318	12318		26.693	0	1	27946			53723	12867	37503	37564	58912	58912					0.05138012131760661
NILYWKVD	8	Unmodified	_NILYWKVD_					0	0	0			REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.29638671875	2	525.784567	1049.55458	-1.2009	-0.00063144	3.4425	0.00181	2.2416	0.0011786	525.7865692600126	81.028	0.35594	81.028	80.822	81.178	0					13	8	2	0	0	0	0.027866	1	10067	10067		33.516	5.6333	1	128740	+		53724	34586	37504	37565	58913	58913					0.03178644448621526
NILYWKVD	8	Unmodified	_NILYWKVD_					0	0	0			REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.7916870117188	2	525.784567	1049.55458	-0.41449	-0.00021793	1.7214	0.00090509	1.3069	0.00068716	526.2877034442455	61.327	0.38668	61.327	61.18	61.566	0					10	9	2	0	0	0	0.027866	1	7089	7089		52.299	9.903	1	212600	+		53725	34586	37504	37565	58914	58914					0.03178644448621526
NILYWKVD	8	Unmodified	_NILYWKVD_					0	0	0			REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	REV__ENST00000532784.5_1_11:74303703-74306426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.29638671875	2	525.784567	1049.55458	-0.70002	-0.00036806	2.4116	0.001268	1.7116	0.00089994	525.7857968362703	81.03	0.31896	81.054	80.929	81.248	0.023903					13	7	2	0	0	0	0.027866	1	9992	9992		33.516	10.473	1	153400	+		53726	34586	37504	37565	58915	58915					0.03178644448621526
NIMELLLLL	9	Unmodified	_NIMELLLLL_					0	0	0			REV__ENST00000526129.5_1_1:76199287-76200536:+|nuORF	REV__ENST00000526129.5_1_1:76199287-76200536:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3292236328125	2	536.327753	1070.64095	1.5633	0.00083843	1.2455	0.00066799	2.8088	0.0015064	536.3284676516844	19.038	1.3354	18.805	18.533	19.868	-0.23345					74	26	5	0	0	0	0.64155	1	377	377		50.025	4.0523	1	7075300	+		53727	34432	37505	37566	58916	58916					0.10845887958998901
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_		NIM(1)ETLIEI		NIM(110)ETLIEI	0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2861328125	2	546.286282	1090.55801	-0.64029	-0.00034978	0.46605	0.0002546	-0.17424	-9.5187E-05	546.2862951361227	84.357	0.54861	84.357	83.997	84.546	0					44	12	4	0	0	0	0.10174	1	10578	10578		110.12	8.5192	1	2218100	+		53728	24668	37506	37567	58917	58917		730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_		NIM(1)ETLIEI		NIM(140)ETLIEI	0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.286376953125	2	546.286282	1090.55801	-1.3975	-0.00076342	1.0551	0.0005764	-0.34235	-0.00018702	546.286669597436	84.326	0.55037	84.254	83.917	84.468	-0.072769					41	12	4	0	0	0	0.027092	1	10519	10519		143.89	7.6186	1	2251600	+		53729	24668	37506	37567	58918	58918		730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_		NIM(1)ETLIEI		NIM(130)ETLIEI	0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2863159179688	2	546.286282	1090.55801	-1.2501	-0.00068292	1.1543	0.00063059	-0.095796	-5.2332E-05	546.2866701758142	84.287	0.76054	84.314	83.945	84.705	0.026558					48	17	4	0	0	0	0.043667	1	10484	10484		131.03	14.128	1	2188200	+		53730	24668	37506	37567	58919	58919		730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_		NIM(1)ETLIEI		NIM(82)ETLIEI	0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2864990234375	2	546.286282	1090.55801	-0.067594	-3.6925E-05	-0.49135	-0.00026842	-0.55894	-0.00030534	546.285671477675	85.76	2.2519	85.623	84.577	86.829	-0.13752					110	52	3	0	0	0	0.2508	1	10401	10401		82.241	7.9855	1	556970	+		53731	24668	37506	37567	58920	58920		730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_					0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	546.286282	1090.55801	-1.3975	-0.00076342	1.0551	0.0005764	-0.34235	-0.00018702	546.286669597436	84.326	0.55037	84.254	83.917	84.468	-0.072769	0.011133	0.0009046	NaN	143.89	41	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2251600	+		53732	24668	37506	37567				730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_					0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	546.286282	1090.55801	-1.2501	-0.00068292	1.1543	0.00063059	-0.095796	-5.2332E-05	546.2866701758142	84.287	0.76054	84.314	83.945	84.705	0.026558	0.071432	0.001013	NaN	143.89	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2188200	+		53733	24668	37506	37567				730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_					0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	546.286282	1090.55801	0.29668	0.00016207	-0.28152	-0.00015379	0.015163	8.2836E-06	546.2859149760867	84.381	1.06	84.178	83.82	84.88	-0.20329	-0.064714	-0.00055578	NaN	143.89	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1168300	+		53734	24668	37506	37567				730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_					0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	546.286282	1090.55801	0.53278	0.00029105	-0.80458	-0.00043953	-0.2718	-0.00014848	546.2856507694288	84.322	0.85602	84.163	83.801	84.657	-0.15869	-0.079571	-0.0011273	NaN	143.89	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1226100	+		53735	24668	37506	37567				730			0.01635526440304602
NIMETLIEI	9	Oxidation (M)	_NIM(Oxidation (M))ETLIEI_					0	0	1			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	546.286282	1090.55801	0.022071	1.2057E-05	-0.21803	-0.0001191	-0.19596	-0.00010705	546.285987728168	84.327	1.0229	84.189	83.845	84.868	-0.13789	-0.053253	-0.0004864	NaN	143.89	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1150300	+		53736	24668	37506	37567				730			0.01635526440304602
NIMETLIEI	9	Unmodified	_NIMETLIEI_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2879028320312	2	538.288825	1074.5631	-0.16391	-8.8232E-05	0.066303	3.569E-05	-0.097609	-5.2542E-05	538.2886959262779	89.621	0.71303	89.6	89.241	89.954	-0.021645					31	16	2	0	0	0	0.14024	1	11278	11278		101.6	8.4052	1	1310000	+		53737	24668	37506	37568	58921	58921					0.028798303029361705
NIMETLIEI	9	Unmodified	_NIMETLIEI_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.288818359375	2	538.288825	1074.5631	-1.0337	-0.00055644	1.3871	0.00074664	0.35335	0.0001902	538.2893144109066	89.61	0.84308	89.448	89.133	89.976	-0.1626					47	19	3	0	0	0	0.16468	1	10952	10952		96.19	2.184	1	1277300	+		53738	24668	37506	37568	58922	58922					0.028798303029361705
NIMKQTICS	9	Unmodified	_NIMKQTICS_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2853393554688	2	519.259545	1036.50454	0.29331	0.00015231	-1.2872	-0.00066838	-0.99387	-0.00051608	519.2593945905867	51.237	0.49321	50.961	50.702	51.195	-0.27643					21	12	2	0	0	0	0.02435	1	5278	5278		26.693	0	1	470890			53739	10251	37507	37569	58923	58923					-0.01225549543210036
NIMTTTSTVP	10	Oxidation (M)	_NIM(Oxidation (M))TTTSTVP_		NIM(1)TTTSTVP		NIM(62)TTTSTVP	0	0	1		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.764404296875	2	540.765714	1079.51688	-0.5647	-0.00030537	-1.9385	-0.0010483	-2.5032	-0.0013536	540.7645142367262	49.686	1.4253	49.686	49.249	50.675	0					129	40	5	0	0	0	0.77808	1	5145	5145		62.107	7.3311	1	5786300			53740	37	37508	37570	58924	58924		0			-0.01970234599161813
NIMVPSCTI	9	Unmodified	_NIMVPSCTI_					0	0	0		nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284609|Q8NGG8|OR8B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2500305175781	2	489.243363	976.472174	-0.46908	-0.00022949	3.6505	0.001786	3.1815	0.0015565	489.2446229781478	33.581	0.20643	33.35	33.232	33.439	-0.23107					6	4	2	0	0	0	0.024381	1	2404	2404		29.15	0	1	52918			53741	18808	37509	37571	58925	58925					-0.01700336946180414
NINFILNQP	9	Unmodified	_NINFILNQP_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.81591796875	2	536.792924	1071.57129	-0.97288	-0.00052223	0.81681	0.00043846	-0.15607	-8.3776E-05	536.7933413849081	65.19	0.69913	65.19	64.944	65.643	0					55	19	4	0	0	0	0.024405	1	7781	7781		44.117	17.424	1	3043000	+		53742	23531	37510	37572	58926	58926					0.03837145334591696
NINHIAVAH	9	Unmodified	_NINHIAVAH_					0	0	0		ENST00000259486.10_1_8:120613639-120620170:-|nuORF	ENST00000259486.10_1_8:120613639-120620170:-|nuORF	ENST00000259486.10_1_8:120613639-120620170:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.23577880859375	2	494.769783	987.525013	-0.44024	-0.00021782	4.036	0.0019969	3.5958	0.0017791	494.77138858084703	22.837	0.41511	22.652	22.554	22.969	-0.18539					13	8	2	0	0	0	0.024535	1	828	828		33.516	9.3128	1	91854			53743	11435	37511	37573	58927	58927					0.030751252231198123
NINKKDSL	8	Unmodified	_NINKKDSL_					0	0	0			REV__ENST00000393766.6_1_4:166263162-166263234:+|nuORF	REV__ENST00000393766.6_1_4:166263162-166263234:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2632141113281	2	466.263999	930.513445	-1.0918	-0.00050906	-0.32943	-0.0001536	-1.4212	-0.00066266	466.2639071491436	37.918	2.4894	37.699	36.989	39.479	-0.21848					154	67	5	0	0	0	0.33369	1	3087	3087		106.42	8.9425	1	65965000	+		53744	31653	37512	37574	58928	58928					0.04540883409140406
NINKKKID	8	Unmodified	_NINKKKID_					0	0	0			REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.31048583984375	2	486.795466	971.57638	0.56426	0.00027468	3.3381	0.001625	3.9023	0.0018996	486.79704351576373	75.04	0.54803	74.862	74.644	75.192	-0.17805					20	12	2	0	0	0	0.027866	1	8825	8825		24.203	4.206	1	137650	+		53745	25531	37513	37575	58929	58929					0.08945449197187827
NINLFCVVS	9	Carbamidomethyl (C)	_NINLFC(Carbamidomethyl (C))VVS_	NINLFC(1)VVS		NINLFC(63)VVS		0	1	0		ENST00000508588.5_1_4:88964466-88973152:+|nuORF	ENST00000508588.5_1_4:88964466-88973152:+|nuORF	ENST00000508588.5_1_4:88964466-88973152:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2755737304688	2	533.273509	1064.53247	-0.44721	-0.00023849	4.0842	0.002178	3.637	0.0019395	533.2758097120734	49.639	0.84327	49.639	49.399	50.242	0					61	23	4	0	0	0	0.43973	1	5150	5150		63.306	6.5852	1	3307600			53746	15785	37514	37576	58930	58930	210				0.00278096708530029
NINLTELTL	9	Unmodified	_NINLTELTL_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7899169921875	2	515.792589	1029.57063	0.19521	0.00010069	0.71071	0.00036658	0.90591	0.00046726	515.7927762435289	52.454	1.0963	52.306	51.777	52.873	-0.14723					43	28	2	0	0	0	0.51687	1	5594	5594		58.23	1.5089	1	1859100			53747	2209	37515	37577	58931	58931					0.057023058948516336
NINLVPKVP	9	Unmodified	_NINLVPKVP_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.30352783203125	2	497.30821	992.601866	-0.40273	-0.00020028	0.056446	2.8071E-05	-0.34628	-0.00017221	497.308181555804	22.067	0.84229	21.877	21.613	22.455	-0.19072					51	17	5	0	0	0	0.55828	1	760	760		55.504	2.1528	1	1673400			53748	8836	37516	37578	58932	58932					0.10526923719612569
NINRKEVK	8	Unmodified	_NINRKEVK_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2833557128906	2	500.79854	999.582528	-1.2807	-0.00064139	3.1369	0.0015709	1.8562	0.00092956	500.79982492799917	38.082	0.41382	38.11	37.884	38.298	0.027275					20	11	2	0	0	0	0.027866	1	3074	3074		53.351	2.016	1	224210			53749	3681	37517	37579	58933	58933					0.08271967428709104
NINSNGEN	8	Unmodified	_NINSNGEN_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.6985778808594	2	431.188488	860.362424	-0.52918	-0.00022818	1.5044	0.00064869	0.97525	0.00042052	431.18918694809986	32.802	0.95058	32.809	32.371	33.321	0.0066261					60	25	4	0	0	0	0.027866	1	2318	2318		44.117	13.613	1	744310			53750	9743	37518	37580	58934	58934					-0.07334302969513828
NINTGSLLLP	10	Unmodified	_NINTGSLLLP_					0	0	0		ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENST00000435236.2_1_X:98974480-98975440:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.3031005859375	2	521.300581	1040.58661	-1.3241	-0.00069027	1.1536	0.00060139	-0.17049	-8.8878E-05	521.3010355944747	60.673	0.74037	60.673	60.33	61.07	0					52	19	3	0	0	0	0.48123	2	6987	6987;6998		90.37	10.919	1	6189300			53751	14259	37519	37581	58935;58936	58935					0.06794012131763338
NINTSIPNV	9	Unmodified	_NINTSIPNV_					0	0	0		ENST00000514262.5_1_5:52159827-52162958:+|nuORF	ENST00000514262.5_1_5:52159827-52162958:+|nuORF	ENST00000514262.5_1_5:52159827-52162958:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31292724609375	2	486.261456	970.50836	0.089816	4.3674E-05	3.21	0.0015609	3.2998	0.0016046	486.2629071573821	40.026	0.29642	40.026	39.879	40.176	0					11	7	2	0	0	0	0.024209	1	3477	3477		56.721	5.3856	1	120130			53752	15879	37520	37582	58937	58937					0.021925795465108422
NIPETLPI	8	Unmodified	_NIPETLPI_					0	0	0			REV__sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	REV__sp|P12977|EBNA3_EBVB9Epstein-Barrnuclearantigen3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA3PE=1SV=2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.7568054199219	2	448.758018	895.501483	0.18779	8.4271E-05	-3.1462	-0.0014119	-2.9584	-0.0013276	448.75645610556217	19.099	0.88495	18.98	18.61	19.495	-0.11872					33	17	3	0	0	0	1.0338	1	370	370		31.955	1.4512	1	202450	+		53753	37561	37521	37583	58938	58938					0.049552666659678835
NIPFLQLQV	9	Unmodified	_NIPFLQLQV_					0	0	0		nc|ENSG00000196642|Q3YEC7-4|RABL6;nc|ENSG00000196642|Q3YEC7-5|RABL6	nc|ENSG00000196642|Q3YEC7-4|RABL6	nc|ENSG00000196642|Q3YEC7-4|RABL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7772216796875	2	536.313492	1070.61243	0.071305	3.8242E-05	-4.3267	-0.0023205	-4.2554	-0.0022822	536.3110797526426	57.522	0.34869	57.347	57.111	57.46	-0.1749					14	8	2	0	0	0	0.024205	1	6419	6419		53.351	0	1	528210			53754	18629	37522	37584	58939	58939					0.07994906374028687
NIPGERVATVL	11	Unmodified	_NIPGERVATVL_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.8378295898438	2	584.837862	1167.66117	-1.6075	-0.00094015	1.0139	0.00059297	-0.59364	-0.00034718	584.8384827619993	52.92	0.87505	52.92	52.634	53.509	0					75	23	5	0	0	0	0.70358	1	5717	5717		63.534	3.6031	1	7466100			53755	7979	37523	37585	58940	58940					0.08404774943142002
NIPGERVATVL	11	Unmodified	_NIPGERVATVL_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.8377685546875	2	584.837862	1167.66117	-1.3256	-0.00077527	0.84721	0.00049548	-0.4784	-0.00027979	584.8383370442375	53.001	0.77698	52.853	52.569	53.346	-0.14723					67	20	5	0	0	0	0.70358	1	5677	5677		63.534	6.8128	1	6449700			53756	7979	37523	37585	58941	58941					0.08404774943142002
NIPGERVATVL	11	Unmodified	_NIPGERVATVL_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.8373413085938	2	584.837862	1167.66117	0.58746	0.00034357	-1.1534	-0.00067458	-0.56598	-0.00033101	584.8372126199127	52.788	0.83825	52.88	52.602	53.44	0.091938					68	22	5	0	0	0	0.76305	1	5610	5610		59.931	1.1488	1	7214900			53757	7979	37523	37585	58942	58942					0.08404774943142002
NIPIICSSIV	10	Unmodified	_NIPIICSSIV_					0	0	0			REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	REV__NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3277587890625	2	529.79936	1057.58417	0.97128	0.00051458	-1.8937	-0.0010033	-0.92238	-0.00048868	529.7983222972546	19.837	0.44458	19.603	19.325	19.769	-0.23345					18	8	3	0	0	0	0.03519	1	425	425		49.442	10.189	1	31088	+		53758	28013	37524	37586	58943	58943					0.057678404024500196
NIPKLRAGF	9	Unmodified	_NIPKLRAGF_					0	0	0		ENSG00000015413|ENST00000690203|DPEP1;ENST00000565249.5_1_16:89680092-89703400:+|nuORF;ENST00000564281.5_1_16:89680092-89704100:+|nuORF	ENSG00000015413|ENST00000690203|DPEP1	ENSG00000015413|ENST00000690203|DPEP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2952880859375	2	508.306001	1014.59745	-0.045293	-2.3023E-05	-1.2013	-0.0006106	-1.2465	-0.00063363	508.30524571512944	64.06	0.90736	63.808	63.444	64.352	-0.25141					48	24	3	0	0	0	0.024466	1	7431	7431		25.45	0	1	1259400			53759	931	37525	37587	58944	58944					0.09073459296701003
NIPKSLAGSL	10	Unmodified	_NIPKSLAGSL_					0	0	0		nc|ENSG00000229715|Q658K8|EEF1DP3	nc|ENSG00000229715|Q658K8|EEF1DP3	nc|ENSG00000229715|Q658K8|EEF1DP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2901611328125	2	500.295299	998.576045	0.73886	0.00036965	3.2132	0.0016076	3.9521	0.0019772	500.797888361297	98.646	0.57645	98.509	98.104	98.68	-0.13625					14	12	2	0	0	0	0.03519	1	12189	12189		29.17	16.211	1	94045			53760	18742	37526	37588	58945	58945					0.07670029477333173
NIPMRLFM	8	Unmodified	_NIPMRLFM_					0	0	0		ENSG00000164645|ENST00000297203|TEX47	ENSG00000164645|ENST00000297203|TEX47	ENSG00000164645|ENST00000297203|TEX47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.3050231933594	2	511.269716	1020.52488	0.39688	0.00020291	1.6554	0.00084636	2.0523	0.0010493	511.2706532354555	19.351	0.6431	19.19	18.738	19.381	-0.1608					14	12	2	0	0	0	0.027866	1	372	372		35.201	7.3185	1	20021			53761	7302	37527	37589	58946	58946					0.015436659072861403
NIPQMSFDD	9	Unmodified	_NIPQMSFDD_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7848510742188	2	533.729132	1065.44371	-0.57449	-0.00030662	3.2919	0.001757	2.7174	0.0014504	533.730635649936	46.909	0.15369	46.756	46.622	46.776	-0.15301					5	3	2	0	0	0	0.024523	1	4643	4643		29.15	16.943	1	64669			53762	1207	37528	37590	58947	58947					-0.08639363321776727
NIPTNLRVLRS	11	Unmodified	_NIPTNLRVLRS_					0	0	0		ENSG00000171564|ENST00000302068|FGB	ENSG00000171564|ENST00000302068|FGB	ENSG00000171564|ENST00000302068|FGB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	642.3831176757812	2	641.883136	1281.75172	0.76256	0.00048947	-1.8886	-0.0012122	-1.126	-0.00072277	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0392	1	11743	11743		28.081	3.5623	1	3421300			53763	8172	37529	37591	58948	58948					0.12211243991418996
NIPVREELV	9	Unmodified	_NIPVREELV_					0	0	0			REV__ENST00000486705.1_1_3:139062973-139067190:+|nuORF	REV__ENST00000486705.1_1_3:139062973-139067190:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.8060302734375	2	534.806031	1067.59751	-0.90426	-0.00048361	0.74965	0.00040092	-0.15462	-8.269E-05	534.806391399952	80.366	0.94426	80.366	79.994	80.939	0					44	22	3	0	0	0	0.5973	1	9982	9982		52.937	12.159	1	1898100	+		53764	26917	37530	37592	58949	58949					0.06641414506043475
NIPWCICATF	10	Unmodified	_NIPWCICATF_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|191|1|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|191|1|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|191|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.803466796875	2	584.269912	1166.52527	-0.61611	-0.00035998	-0.10639	-6.2159E-05	-0.7225	-0.00042214	584.2696390852743	53.32	0.68215	53.13	52.712	53.395	-0.18982					34	17	3	0	0	0	0.03519	1	5601	5601		34.173	11.13	1	1869300			53765	17875	37531	37593	58950	58950					-0.05132959163574924
NIQADPTIV	9	Unmodified	_NIQADPTIV_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENST00000511334.1_1_5:64872783-64879053:+|nuORF	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3131103515625	2	485.763832	969.513111	0.32051	0.00015569	-0.10963	-5.3257E-05	0.21088	0.00010244	485.7637520024896	40.454	0.46592	40.342	40.055	40.521	-0.11222					29	12	4	0	0	0	0.022083	1	3523	3523		76.774	7.1465	1	695940			53766	3307	37532	37594	58951	58951					0.02713463689292439
NIQADPTIV	9	Unmodified	_NIQADPTIV_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENST00000511334.1_1_5:64872783-64879053:+|nuORF	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.763832	969.513111	-0.16178	-7.8586E-05	-0.05905	-2.8684E-05	-0.22083	-0.00010727	485.76301286815266	40.553	0.32838	40.328	40.078	40.406	-0.225	-0.051026	-0.00024934	NaN	76.774	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265680			53767	3307	37532	37594							0.02713463689292439
NIQADPTIV	9	Unmodified	_NIQADPTIV_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;nc|ENSG00000113593|Q96BP3-2|PPWD1;ENST00000511334.1_1_5:64872783-64879053:+|nuORF	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.763832	969.513111	-1.092	-0.00053046	-2.7877	-0.0013542	-3.8797	-0.0018846	485.76273824284476	40.627	0.33004	40.397	40.12	40.45	-0.23029	0.017875	-0.0029003	NaN	76.774	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372820			53768	3307	37532	37594							0.02713463689292439
NIQAEDSFD	9	Unmodified	_NIQAEDSFD_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2979736328125	2	519.722361	1037.43017	-0.2849	-0.00014807	3.4448	0.0017904	3.1599	0.0016423	519.7241703585677	60.342	0.51077	60.089	59.868	60.378	-0.25374					17	12	2	0	0	0	0.024477	1	6726	6726		27.882	8.5223	1	131890	+		53769	26284	37533	37595	58952	58952					-0.08704897829352376
NIQAKGLGKN	10	Unmodified	_NIQAKGLGKN_					0	0	0		ENSG00000197479|ENST00000354757|PCDHB11;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	ENSG00000197479|ENST00000354757|PCDHB11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2797241210938	2	521.803823	1041.59309	-1.229	-0.00064132	3.9009	0.0020355	2.6718	0.0013942	522.3083391990069	59.951	0.19106	60.03	59.936	60.127	0.078888					6	4	2	0	0	0	0.03519	1	6780	6780		39.253	0	1	63374			53770	10006	37534	37596	58953	58953					0.07395950083150638
NIQDGEATCY	10	Unmodified	_NIQDGEATCY_					0	0	0		ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.2294311523438	2	557.229496	1112.44444	-0.22337	-0.00012447	0.53094	0.00029585	0.30757	0.00017139	557.2296523234664	43.229	1.0335	43.117	42.775	43.809	-0.11253					70	27	4	0	0	0	0.64538	1	3948	3948		71.877	0.58177	1	3833800			53771	2404	37535	37597	58954	58954					-0.1072856867272094
NIQDGEATCY	10	Unmodified	_NIQDGEATCY_					0	0	0		ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	ENSG00000102359|ENST00000373004|SRPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2294921875	2	557.229496	1112.44444	-0.51549	-0.00028725	0.34184	0.00019049	-0.17365	-9.6762E-05	557.2295441544712	43.394	0.68742	43.157	42.839	43.527	-0.23736					59	18	4	0	0	0	0.62431	1	3966	3966		74.255	5.6293	1	3897300			53772	2404	37535	37597	58955	58955					-0.1072856867272094
NIQDSIAKQI	10	Unmodified	_NIQDSIAKQI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.3162231445312	2	565.31422	1128.61389	-0.51774	-0.00029268	4.0954	0.0023152	3.5777	0.0020225	565.3164586892149	95.11	1.3372	95.114	94.617	95.955	0.0041199					77	30	4	0	0	0	0.69662	1	12013	12013		67.494	3.9598	1	2113100			53773	1175;38049	37536	37598	58956	58956					0.05472495672142941
NIQEKSLYI	9	Unmodified	_NIQEKSLYI_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3052368164062	2	554.305864	1106.59717	-0.70234	-0.00038931	0.043664	2.4203E-05	-0.65867	-0.00036511	554.3057907641179	75.8	1.4395	75.556	75.153	76.593	-0.24455					96	37	5	0	0	0	0.53979	1	9319	9319		56.721	3.3696	1	9835000	+		53774	36945	37537	37599	58957	58957					0.04813994786195508
NIQEKSLYI	9	Unmodified	_NIQEKSLYI_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3052368164062	2	554.305864	1106.59717	0.29766	0.000165	-0.83856	-0.00046482	-0.54089	-0.00029982	554.3053230362917	75.615	1.5245	75.625	75.25	76.774	0.010376					98	39	4	0	0	0	0.39228	1	9216	9216		66.429	13.078	1	9403400	+		53775	36945	37537	37599	58958	58958					0.04813994786195508
NIQEQSQQP	9	Unmodified	_NIQEQSQQP_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3057861328125	2	536.256902	1070.49925	-0.47042	-0.00025226	-0.46932	-0.00025168	-0.93974	-0.00050394	536.2582851363792	47.538	0.62248	47.441	47.083	47.706	-0.096653					35	16	3	0	0	0	0.024457	1	4698	4698		37.159	11.709	1	248510			53776	2042	37538	37600	58959	58959					-0.03317813809803738
NIQLTYID	8	Unmodified	_NIQLTYID_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25848388671875	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.97924	1	13514	13514		40.573	4.9543	1	6674100	+		53777	21768	37539	37601	58960	58960					0.012100613149868877
NIQNPKLAV	9	Unmodified	_NIQNPKLAV_					0	0	0			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.27362060546875	2	498.795466	995.57638	-0.061876	-3.0864E-05	4.0869	0.0020385	4.025	0.0020076	498.7973951073996	45.496	0.63799	45.496	45.214	45.852	0					42	18	3	0	0	0	0.024436	1	4449	4449		38.806	9.6566	1	2538200	+		53778	25151	37540	37602	58961	58961					0.07841449197189831
NIQNPKLAV	9	Unmodified	_NIQNPKLAV_					0	0	0			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.795466	995.57638	-0.53722	-0.00026796	0.69539	0.00034686	0.15817	7.8896E-05	498.7955951868696	45.294	0.47924	45.195	45.012	45.491	-0.099445	-0.16079	-0.0026096	NaN	30.504	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344610	+		53779	25151	37540	37602							0.07841449197189831
NIQNPKLAV	9	Unmodified	_NIQNPKLAV_					0	0	0			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.795466	995.57638	-0.079451	-3.963E-05	-0.11871	-5.921E-05	-0.19816	-9.8839E-05	498.7953648854151	45.427	0.37265	45.174	45.019	45.392	-0.25252	-0.18116	-0.0034217	NaN	30.504	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230080	+		53780	25151	37540	37602							0.07841449197189831
NIQNPKLAV	9	Unmodified	_NIQNPKLAV_					0	0	0			REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	REV__FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.795466	995.57638	-0.72638	-0.00036231	0.84153	0.00041975	0.11515	5.7437E-05	498.79559470463755	45.387	0.29284	45.176	45.056	45.349	-0.21109	-0.17927	-0.0024638	NaN	30.504	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167630	+		53781	25151	37540	37602							0.07841449197189831
NIQPQQNKS	9	Unmodified	_NIQPQQNKS_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2471313476562	2	528.775262	1055.53597	0.40602	0.00021469	3.6078	0.0019077	4.0138	0.0021224	528.7764801621938	59.426	0.48791	59.177	58.93	59.417	-0.24842					23	11	3	0	0	0	0.024495	1	6522	6522		26.693	0	1	227060	+		53782	21973	37541	37603	58962	58962					0.0104248280676984
NIQRPCRKSV	10	Unmodified	_NIQRPCRKSV_					0	0	0		ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.247314453125	3	400.892513	1199.65571	0.044233	1.7733E-05	2.6552	0.0010644	2.6994	0.0010822	400.8935560723459	32.58	0.5173	32.591	32.338	32.855	0.011795					27	13	3	0	0	0	0.03519	1	2297	2297		26.063	0	1	92124			53783	4661	37542	37604	58963	58963					0.06386772879682212
NIQVQEAR	8	Unmodified	_NIQVQEAR_					0	0	0		nc|ENSG00000160856|Q96P31-5|FCRL3;ENST00000494724.5_1_1:157667081-157670285:-|nuORF	nc|ENSG00000160856|Q96P31-5|FCRL3	nc|ENSG00000160856|Q96P31-5|FCRL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7999267578125	2	479.259248	956.503943	-0.20673	-9.9077E-05	-0.10243	-4.9089E-05	-0.30916	-0.00014817	479.2590165610548	26.614	0.91145	26.591	26.283	27.195	-0.023088					50	22	4	0	0	0	0.027866	1	1437	1437		90.777	8.4716	1	738720			53784	15536	37543	37605	58964	58964					0.023951151236246915
NIRAIRRA	8	Unmodified	_NIRAIRRA_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7459411621094	2	485.306867	968.599181	-0.84574	-0.00041044	4.2351	0.0020553	3.3894	0.0016449	485.30869212064823	61.812	0.78834	61.634	61.329	62.117	-0.17781					22	19	2	0	0	0	0.027866	1	6995	6995		42.474	0	1	141960			53785	4286	37544	37606	58965	58965					0.11362513105325434
NIRDFLVEI	9	Unmodified	_NIRDFLVEI_					0	0	0		nc|ENSG00000104133|Q96JI7-2|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.8097534179688	2	559.813856	1117.61316	0.49237	0.00027564	3.5323	0.0019774	4.0247	0.0022531	559.8154523939778	83.581	2.7087	83.369	82.661	85.37	-0.21159					133	63	3	0	0	0	0.023655	1	9992	9992		69.628	5.4204	1	459710			53786	2546	37545	37607	58966	58966					0.05905701023107213
NIRDPRLCEY	10	Unmodified	_NIRDPRLCEY_					0	0	0			REV__sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	REV__sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.58624267578125	3	426.880162	1277.61866	0.96993	0.00041404	1.9819	0.00084602	2.9518	0.0012601	426.88090214843004	18.712	0.64322	18.555	18.197	18.84	-0.15637					26	12	3	0	0	0	0.03519	1	311	311		37.508	7.9574	1	73522	+		53787	37525	37546	37608	58967	58967					-0.009049434567259595
NIRGKLVSL	9	Unmodified	_NIRGKLVSL_					0	0	0		ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.3186950683594	2	500.319109	998.623664	-0.42813	-0.0002142	-0.34547	-0.00017284	-0.7736	-0.00038705	500.3188845452206	42.563	0.80583	42.331	42.079	42.885	-0.23186					46	20	4	0	0	0	0.53979	1	3835	3835		56.721	9.0637	1	2190400			53788	3526	37547	37609	58968	58968					0.12429728468180201
NIRGKLVSL	9	Unmodified	_NIRGKLVSL_					0	0	0		ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.319109	998.623664	-0.7171	-0.00035878	-0.089161	-4.4609E-05	-0.80626	-0.00040339	500.31895962733364	42.583	0.82363	42.357	41.969	42.793	-0.22597	0.038875	0.00030259	NaN	56.721	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2076200			53789	3526	37547	37609							0.12429728468180201
NIRGLDNP	8	Unmodified	_NIRGLDNP_					0	0	0			REV__ENSG00000131242|ENST00000621161|RAB11FIP4	REV__ENSG00000131242|ENST00000621161|RAB11FIP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.75885009765625	2	449.740691	897.466829	-0.85783	-0.0003858	3.2539	0.0014634	2.3961	0.0010776	449.74256396684393	44.689	0.41099	44.54	44.455	44.866	-0.1488					14	11	2	0	0	0	0.027866	1	4268	4268		40.573	0	1	106260	+		53790	23197	37548	37610	58969	58969					0.013994435778499792
NIRKLKEP	8	Unmodified	_NIRKLKEP_					0	0	0		ENST00000314134.3_1_11:45832900-45833176:+|nuORF	ENST00000314134.3_1_11:45832900-45833176:+|nuORF	ENST00000314134.3_1_11:45832900-45833176:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7951354980469	2	499.311284	996.608014	0.36561	0.00018255	-0.49332	-0.00024632	-0.12771	-6.3768E-05	499.31076016586974	58.121	0.50866	58.121	57.91	58.418	0					24	13	3	0	0	0	0.027866	1	6615	6615		42.396	9.5837	1	520890			53791	12113	37549	37611	58970	58970					0.1095744195114321
NIRKVQPL	8	Unmodified	_NIRKVQPL_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.3059387207031	2	484.306001	966.597449	-1.1041	-0.00053471	0.43561	0.00021097	-0.66847	-0.00032374	484.30609254149294	30.696	0.7887	30.696	30.384	31.173	0					34	18	2	0	0	0	0.97924	1	2007	2007		40.573	3.4135	1	1669200			53792	9821	37550	37612	58971	58971					0.11281459296708363
NIRLVYNKT	9	Unmodified	_NIRLVYNKT_					0	0	0		ENSG00000103066|ENST00000219345|PLA2G15	ENSG00000103066|ENST00000219345|PLA2G15	ENSG00000103066|ENST00000219345|PLA2G15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2974853515625	2	560.827298	1119.64004	0.28098	0.00015758	2.3713	0.0013299	2.6523	0.0014875	560.8288683989472	71.998	1.0016	71.998	71.453	72.454	0					65	25	4	0	0	0	0.024447	1	8813	8813		25.574	0	1	840740			53793	2465	37551	37613	58972	58972					0.08500809634256257
NIRNIGKTL	9	Unmodified	_NIRNIGKTL_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF;ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENST00000493479.1_1_4:153472952-153473506:-|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7962646484375	2	514.81419	1027.61383	-1.1107	-0.00057178	0.34056	0.00017532	-0.7701	-0.00039646	514.8142831693743	35.48	0.57979	35.459	35.271	35.851	-0.021763					38	14	4	0	0	0	0.024477	1	2711	2711		20.947	0	1	467520			53794	5814	37552	37614	58973	58973					0.10112540462819197
NIRNVQSVARH	11	Unmodified	_NIRNVQSVARH_					0	0	0			REV__nc|ENSG00000172456|Q96C11-4|FGGY	REV__nc|ENSG00000172456|Q96C11-4|FGGY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	646.3665771484375	2	647.360359	1292.70617	-2.2513	-0.0014574	-3.3297	-0.0021555	-5.5811	-0.003613	647.8598188476321	46.181	0.19095	46.085	45.961	46.152	-0.096649					6	4	2	0	0	0	0.024735	1	4445	4445		38.754	7.1193	1	202710	+		53795	26671	37553	37615	58974	58974					0.07152018529041015
NIRPRTFF	8	Unmodified	_NIRPRTFF_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3043823242188	2	525.795801	1049.57705	0.14734	7.7468E-05	-1.9836	-0.001043	-1.8363	-0.00096549	525.7946801573202	69.901	0.45554	69.678	69.474	69.929	-0.22245					20	9	3	0	0	0	0.027866	1	8099	8099		31.955	8.9124	1	234220	+		53796	20130	37554	37616	58975	58975					0.05424288636891106
NIRRKPQV	8	Unmodified	_NIRRKPQV_					0	0	0		ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3	ENSG00000122025|ENST00000241453|FLT3	ENSG00000122025|ENST00000241453|FLT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2565612792969	2	505.814525	1009.6145	0.062782	3.1756E-05	3.6087	0.0018253	3.6715	0.0018571	505.81651730478734	56.381	0.62047	56.165	55.808	56.429	-0.21607					33	14	3	0	0	0	0.027866	1	6109	6109		40.573	4.9543	1	388510			53797	3907	37555	37617	58976	58976					0.11007379902514458
NIRYGRVT	8	Unmodified	_NIRYGRVT_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7767333984375	2	489.777608	977.540663	-0.45122	-0.000221	0.16708	8.1833E-05	-0.28414	-0.00013916	489.7775729634192	28.292	1.1432	28.373	27.95	29.093	0.080811					82	27	6	0	0	0	0.97924	1	1594	1594		40.573	1.3198	1	2166900			53798	3478	37556	37618	58977	58977					0.05099411740195592
NISASLILSI	10	Unmodified	_NISASLILSI_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;ENST00000461666.1_1_3:108303828-108308222:-|nuORF	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.284912109375	2	515.810782	1029.60701	-0.54327	-0.00028022	1.7869	0.00092172	1.2437	0.0006415	515.8110944684173	52.56	0.35645	52.433	52.195	52.552	-0.12706					9	8	2	0	0	0	0.03519	1	5480	5480		37.812	11.015	1	71174			53799	7090	37557	37619	58978	58978					0.09339182791586609
NISATTPWFES	11	Unmodified	_NISATTPWFES_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	418.2010192871094	3	418.199666	1251.57717	0.86228	0.00036061	2.7692	0.0011581	3.6315	0.0015187	418.2007031691726	20.715	0.63937	20.784	20.514	21.153	0.068901					30	12	3	0	0	0	1.044	1	533	533		26.75	3.3718	1	182280			53800	6343	37558	37620	58979	58979					-0.0385580094443867
NISDIGEVK	9	Unmodified	_NISDIGEVK_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7782287597656	2	487.761289	973.508025	-0.58491	-0.0002853	0.38603	0.00018829	-0.19888	-9.7006E-05	487.7614497834723	56.914	0.5936	57.009	56.649	57.243	0.095306					20	16	2	0	0	0	0.024427	1	6252	6252		42.396	1.618	1	106750			53801	5383	37559	37621	58980	58980					0.020211598266882902
NISELPDEID	10	Unmodified	_NISELPDEID_					0	0	0		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000376177.6_1_6:31498213-31498830:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	573.3013916015625	2	572.772051	1143.52955	-1.476	-0.00084541	2.3299	0.0013345	0.8539	0.00048909	572.7732343799469	32.846	0.48666	32.846	32.569	33.056	0					26	12	3	0	0	0	0.03519	1	2283	2283		40.058	0.80534	1	332370			53802	10149	37560	37622	58981	58981					-0.03647499935300402
NISELPDEID	10	Unmodified	_NISELPDEID_					0	0	0		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000376177.6_1_6:31498213-31498830:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	572.772051	1143.52955	-0.57476	-0.0003292	1.4057	0.00080516	0.83097	0.00047596	572.7727533167341	32.695	0.48281	32.707	32.45	32.933	0.011799	-0.0061667	-0.00048842	NaN	40.058	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291470			53803	10149	37560	37622							-0.03647499935300402
NISELPDEID	10	Unmodified	_NISELPDEID_					0	0	0		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000376177.6_1_6:31498213-31498830:-|nuORF;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	572.772051	1143.52955	-0.62916	-0.00036036	1.6423	0.00094065	1.0131	0.00058029	572.7728543951184	32.523	0.56804	32.586	32.315	32.883	0.062885	-0.12679	-0.00021744	NaN	40.058	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333200			53804	10149	37560	37622							-0.03647499935300402
NISILIKVL	9	Unmodified	_NISILIKVL_					0	0	0		nc|ENSG00000104231|Q8TCF1-4|ZFAND1	nc|ENSG00000104231|Q8TCF1-4|ZFAND1	nc|ENSG00000104231|Q8TCF1-4|ZFAND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.792724609375	2	506.841885	1011.66922	0.31011	0.00015718	-0.35798	-0.00018144	-0.047869	-2.4262E-05	506.84152812617685	75.934	0.33475	75.946	75.717	76.051	0.011635					12	8	2	0	0	0	0.024374	1	9249	9249		40.778	1.5253	1	85014			53805	18143	37561	37623	58982	58982					0.16384953930560187
NISKLPEYVS	10	Unmodified	_NISKLPEYVS_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.3287353515625	2	575.311146	1148.60774	-1.3043	-0.00075038	-0.42808	-0.00024628	-1.7324	-0.00099666	575.3109078171108	65.139	0.96993	64.937	64.42	65.39	-0.20254					25	23	2	0	0	0	0.03519	1	7385	7385		27.047	0.3544	1	229660	+		53806	21336	37562	37624	58983	58983					0.03937977440614304
NISKLPEYVS	10	Unmodified	_NISKLPEYVS_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	575.311146	1148.60774	-0.69463	-0.00039963	-2.2068	-0.0012696	-2.9015	-0.0016693	575.3101379061516	65.188	0.56542	64.934	64.701	65.267	-0.25433	-0.0015985	-0.0010504	NaN	15.333	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123340	+		53807	21336	37562	37624							0.03937977440614304
NISLAFFLY	9	Unmodified	_NISLAFFLY_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.290283203125	2	544.294768	1086.57498	-0.76972	-0.00041896	-0.84634	-0.00046066	-1.6161	-0.00087961	544.2936907852123	50.528	0.50873	50.528	50.411	50.92	0					23	14	2	0	0	0	0.024466	1	5349	5349		25.45	15.745	1	259150			53808	664	37563	37625	58984	58984					0.03515815108426068
NISLRNKL	8	Unmodified	_NISLRNKL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2938537597656	2	479.295633	956.576714	2.1984	0.0010537	-2.26	-0.0010832	-0.061572	-2.9511E-05	479.29443333037256	24.273	0.8751	24.092	23.715	24.59	-0.18089					47	19	4	0	0	0	0.80469	1	1032	1032		58.782	2.0609	1	1922100			53809	10262	37564	37626	58985	58985					0.09668868917037798
NISPDASL	8	Unmodified	_NISPDASL_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2;ENST00000488258.5_1_7:151265789-151372578:-|nuORF	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.7500915527344	2	408.708525	815.402498	-1.1206	-0.00045799	2.8763	0.0011756	1.7557	0.00071756	408.7095530716129	37.786	0.52367	37.567	37.304	37.828	-0.21848					18	13	2	0	0	0	0.027866	1	3079	3079		101.21	18.907	1	151290			53810	2801	37565	37627	58986	58986					-0.01258756298955177
NISPQTTRQL	10	Unmodified	_NISPQTTRQL_					0	0	0			REV__nc|ENSG00000198000|Q76FK4-4|NOL8	REV__nc|ENSG00000198000|Q76FK4-4|NOL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.31591796875	2	579.317294	1156.62004	0.25157	0.00014574	-3.7894	-0.0021952	-3.5378	-0.0020495	579.3149446034066	99.605	0.91754	99.6	98.899	99.816	-0.0050812					40	20	3	0	0	0	1.0236	1	12637	12637		42.864	0.46813	1	143170	+		53811	28371	37566	37628	58987	58987					0.04799013903652849
NISQVPKLE	9	Unmodified	_NISQVPKLE_					0	0	0			REV__nc|ENSG00000051596|Q96J01-2|THOC3	REV__nc|ENSG00000051596|Q96J01-2|THOC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.294677734375	2	514.292756	1026.57096	-0.7772	-0.00039971	4.1641	0.0021416	3.3869	0.0017419	514.2947055505554	86.432	0.90032	86.456	86.029	86.93	0.023666					39	20	2	0	0	0	0.4752	1	10793	10793		60.972	4.2509	1	1490700	+		53812	20168	37567	37629	58988	58988					0.058737256147196604
NISSQGKKP	9	Unmodified	_NISSQGKKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7515563964844	2	479.769448	957.524344	0.038812	1.8621E-05	-1.0242	-0.00049136	-0.98535	-0.00047274	479.7688898435089	33.643	0.4277	33.643	33.388	33.816	0					16	11	2	0	0	0	0.024409	1	2443	2443		27.047	16.782	1	184310	+		53813	23785	37568	37630	58989	58989					0.0438828578344328
NISSQGKKP	9	Unmodified	_NISSQGKKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.769448	957.524344	0.39919	0.00019152	-1.5463	-0.00074185	-1.1471	-0.00055033	479.7686516351384	33.424	0.43964	33.481	33.176	33.615	0.056572	-0.069487	-0.00033929	NaN	20.837	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154070	+		53814	23785	37568	37630							0.0438828578344328
NISTVLADVL	10	Unmodified	_NISTVLADVL_					0	0	0			REV__PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	REV__PKP3|p.P714Qfs*9|1|0.33|ENSG00000184363|chr11:404002-404002|C/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	522.80078125	2	522.800414	1043.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.76	1	48.76	48.26	49.26	0								0	0	0	0.17534	1	4995	4995		96.19	0.37527	1		+		53815	27662	37569	37631	58990	58990					0.06622592411895312
NITDPEELE	9	Unmodified	_NITDPEELE_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.326416015625	2	530.245669	1058.47678	-0.66598	-0.00035313	-0.059866	-3.1744E-05	-0.72585	-0.00038488	530.2446573134864	74.408	1.354	74.417	74.009	75.363	0.0096512					81	32	5	0	0	0	0.023417	1	9063	9063		68.787	15.435	1	605870			53816	5410	37570	37632	58991	58991					-0.05011457998102742
NITDPEELE	9	Unmodified	_NITDPEELE_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.245669	1058.47678	-0.030276	-1.6054E-05	-1.8163	-0.00096308	-1.8466	-0.00097914	530.2444451753074	74.789	1.1352	74.514	74.089	75.224	-0.27573	0.032317	-0.00050532	NaN	68.787	48	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274950			53817	5410	37570	37632							-0.05011457998102742
NITDPEELE	9	Unmodified	_NITDPEELE_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.245669	1058.47678	-0.33414	-0.00017718	-1.638	-0.00086857	-1.9722	-0.0010457	530.2445163714107	74.823	0.97232	74.559	74.098	75.07	-0.26325	0.078289	-0.00031628	NaN	68.787	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256750			53818	5410	37570	37632							-0.05011457998102742
NITFPLRY	8	Unmodified	_NITFPLRY_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7742309570312	2	512.284734	1022.55492	0.028069	1.4379E-05	2.8897	0.0014804	2.9178	0.0014948	512.2861764892936	45.834	0.7246	45.737	45.427	46.152	-0.096649					43	19	3	0	0	0	0.027866	1	4334	4334		53.351	0	1	884300	+		53819	25043	37571	37633	58992	58992					0.04454064168453442
NITLGVPR	8	Unmodified	_NITLGVPR_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.25140380859375	2	435.263802	868.513051	0.57873	0.0002519	-2.4206	-0.0010536	-1.8419	-0.00080169	435.26140558960464	79.097	0.29043	78.947	78.862	79.152	-0.15051					9	6	2	0	0	0	0.027866	1	9434	9434		29.15	1.2673	1	29854			53820	6043	37572	37634	58993	58993					0.07353508479957327
NITNHGFLI	9	Unmodified	_NITNHGFLI_					0	0	0		ENSG00000132256|ENST00000380034|TRIM5	ENSG00000132256|ENST00000380034|TRIM5	ENSG00000132256|ENST00000380034|TRIM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3340454101562	2	514.779816	1027.54508	-0.60011	-0.00030892	-0.60748	-0.00031272	-1.2076	-0.00062164	514.779768637964	47.657	4.4233	47.657	46.056	50.479	0					198	126	4	0	0	0	0.022756	1	5139	5139		79.451	0	1	1676900			53821	4584	37573	37635	58994	58994					0.03240876163113171
NITSIAPLL	9	Unmodified	_NITSIAPLL_					0	0	0		CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.24615478515625	2	471.286943	940.559333	0.064644	3.0466E-05	-2.8953	-0.0013645	-2.8307	-0.0013341	471.28551420653883	22.653	0.46699	22.578	22.317	22.784	-0.075296					16	9	2	0	0	0	0.024539	1	771	771		27.882	0	1	283310			53822	217	37574	37636	58995	58995					0.0866752859137705
NITSIAPLL	9	Unmodified	_NITSIAPLL_					0	0	0		CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.286943	940.559333	0.091483	4.3115E-05	-2.8585	-0.0013472	-2.7671	-0.0013041	471.2855021364118	22.596	0.51017	22.596	22.338	22.848	0	0.026595	-9.1349E-05	NaN	27.882	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237200			53823	217	37574	37636							0.0866752859137705
NITSIAPLL	9	Unmodified	_NITSIAPLL_					0	0	0		CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	471.286943	940.559333	-0.46057	-0.00021706	-2.4798	-0.0011687	-2.9404	-0.0013858	471.28566195482233	22.46	0.56901	22.534	22.268	22.837	0.073954	-0.034932	0.00026564	NaN	27.882	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254060			53824	217	37574	37636							0.0866752859137705
NITTETSKI	9	Unmodified	_NITTETSKI_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE;ENST00000582678.5_1_17:61557143-61562826:+|nuORF;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE;ENST00000579726.5_2_17:61562598-61563979:+|nuORF	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.758544921875	2	503.774396	1005.53424	0.10738	5.4095E-05	2.9582	0.0014903	3.0656	0.0015444	503.7754059527497	59.09	1.135	59.175	58.921	60.056	0.085682					53	30	2	0	0	0	0.024457	1	6756	6756		21.96	1.013	1	168860			53825	6757	37575	37637	58996	58996					0.03169428998137391
NITVIVVFL	9	Unmodified	_NITVIVVFL_					0	0	0		ENSG00000175175|ENST00000308249|PPM1E;nc|ENSG00000175175|Q8WY54-3|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3180847167969	2	509.320786	1016.62702	-0.025268	-1.2869E-05	0.14723	7.4989E-05	0.12197	6.2119E-05	509.3207037455496	106.92	0.67344	106.8	106.68	107.35	-0.1238					37	22	3	0	0	0	0.90698	1	13328	13328		31.955	2.8053	1	150310			53826	8535	37576	37638	58997	58997					0.11936978522169284
NITVLRGPP	9	Unmodified	_NITVLRGPP_					0	0	0			REV__CUBN|p.A3545P|1|0.59|ENSG00000107611|chr10:16828936-16828936|C/G|missense_variant	REV__CUBN|p.A3545P|1|0.59|ENSG00000107611|chr10:16828936-16828936|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7668151855469	2	483.790184	965.565815	-0.32423	-0.00015686	-0.027949	-1.3522E-05	-0.35217	-0.00017038	483.7899397582574	33.868	1.7538	33.868	33.626	35.38	0					79	45	4	0	0	0	0.02435	1	2670	2670		51.335	6.9583	1	1474400	+		53827	19631	37577	37639	58998	58998					0.08165466542754984
NITVLRGPP	9	Unmodified	_NITVLRGPP_					0	0	0			REV__CUBN|p.A3545P|1|0.59|ENSG00000107611|chr10:16828936-16828936|C/G|missense_variant	REV__CUBN|p.A3545P|1|0.59|ENSG00000107611|chr10:16828936-16828936|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7672119140625	2	483.790184	965.565815	-0.99931	-0.00048345	0.16387	7.928E-05	-0.83543	-0.00040417	483.7908016513547	35.041	0.36755	35.019	34.866	35.233	-0.021767					14	9	3	0	0	0	0.024263	1	2648	2648		60.972	18.576	1	45047	+		53828	19631	37577	37639	58999	58999					0.08165466542754984
NITVRWDL	8	Unmodified	_NITVRWDL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7950439453125	2	508.779816	1015.54508	0.082633	4.2042E-05	-1.8835	-0.00095829	-1.8009	-0.00091625	508.7788545290954	78.932	0.67276	78.7	78.433	79.105	-0.23141					34	15	3	0	0	0	0.027866	1	9431	9431		19.36	0	1	310640			53829	756	37578	37640	59000	59000					0.03792876163083747
NITWGDHDL	9	Unmodified	_NITWGDHDL_					0	0	0		GXYLT1|p.Q318H|1|0.15|ENSG00000151233|chr12:42097944-42097944|T/A|missense_variant	GXYLT1|p.Q318H|1|0.15|ENSG00000151233|chr12:42097944-42097944|T/A|missense_variant	GXYLT1|p.Q318H|1|0.15|ENSG00000151233|chr12:42097944-42097944|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7846069335938	2	535.748713	1069.48287	-0.49613	-0.0002658	1.2207	0.00065399	0.72457	0.00038818	535.7498396313167	55.825	0.26195	55.669	55.48	55.742	-0.15601					8	6	2	0	0	0	0.024457	1	6151	6151		29.15	3.6994	1	63536			53830	17702	37579	37641	59001	59001					-0.049088949759152456
NIVANRLAS	9	Unmodified	_NIVANRLAS_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MSMS	OPSCC_40_ClassI_Rep-2	5	479.2774353027344	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.733	1	85.583	85.083	86.083	-0.14967								0	0	0	0.51175	1	10404	10404		51.335	5.3632	1				53831	6185	37580	37642	59002	59002					0.060319920203255606
NIVDVGHIVP	10	Unmodified	_NIVDVGHIVP_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.813720703125	2	531.800749	1061.58694	0.22976	0.00012219	0.94554	0.00050284	1.1753	0.00062503	531.8003423165375	77.969	0.33348	77.727	77.532	77.866	-0.24232					11	7	2	0	0	0	0.03519	1	9307	9307		58.782	0	1	66964	+		53832	23423	37581	37643	59003	59003					0.058614318515992636
NIVEDNLW	8	Unmodified	_NIVEDNLW_					0	0	0			REV__nc|ENSG00000163904|Q9HC62-2|SENP2	REV__nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2902526855469	2	501.748182	1001.48181	1.1014	0.00055262	-1.3894	-0.00069712	-0.288	-0.0001445	501.74744774515136	98.495	0.3935	98.371	98.197	98.591	-0.12413					14	8	2	0	0	0	0.027866	1	12192	12192		34.173	16.808	1	45707	+		53833	25655	37582	37644	59004	59004					-0.018871093448183274
NIVENIVLN	9	Unmodified	_NIVENIVLN_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.2947387695312	2	514.292756	1026.57096	-0.029069	-1.495E-05	3.6071	0.0018551	3.5781	0.0018402	514.2944344851761	86.502	0.94294	86.457	85.947	86.889	-0.045097					40	21	2	0	0	0	0.48817	1	10819	10819		60.118	3.3972	1	1530100	+		53834	24088	37583	37645	59005	59005					0.058737256147196604
NIVHRGVG	8	Unmodified	_NIVHRGVG_					0	0	0		nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2460632324219	2	426.245944	850.477334	0.074352	3.1692E-05	0.23102	9.8472E-05	0.30537	0.00013016	426.24594874726847	86.792	1.9596	86.792	86.085	88.044	0					116	46	5	0	0	0	1.0572	1	10910	10910		28.254	1.4582	1	11239000			53835	18036	37584	37646	59006	59006					0.04611471022963087
NIVHRGVG	8	Unmodified	_NIVHRGVG_					0	0	0		nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2460632324219	2	426.245944	850.477334	0.09028	3.8481E-05	0.21745	9.2688E-05	0.30773	0.00013117	426.2459398709793	86.867	2.4687	86.822	85.947	88.415	-0.045105					139	58	5	0	0	0	1.0572	1	10869	10869		28.254	1.4582	1	11102000			53836	18036	37584	37646	59007	59007					0.04611471022963087
NIVLSKLAP	9	Unmodified	_NIVLSKLAP_					0	0	0			REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.79229736328125	2	477.80276	953.590967	0.82038	0.00039198	-1.9625	-0.00093767	-1.1421	-0.00054569	477.80151227682705	53.79	0.35779	53.79	53.618	53.976	0					12	9	2	0	0	0	0.024457	1	5857	5857		37.159	10.363	1	97441	+		53837	22111	37585	37647	59008	59008					0.11231521345314377
NIVLYIIE	8	Unmodified	_NIVLYIIE_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1;ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7702941894531	2	488.789318	975.564084	-0.55007	-0.00026887	-3.1779	-0.0015533	-3.728	-0.0018222	488.7877134133758	28.469	1.0407	28.465	27.966	29.006	-0.0042019					39	24	2	0	0	0	0.027866	1	1707	1707		40.573	2.7611	1	311160			53838	4046	37586	37648	59009	59009					0.07532412734155969
NIVMVLEIV	9	Oxidation (M)	_NIVM(Oxidation (M))VLEIV_		NIVM(1)VLEIV		NIVM(59)VLEIV	0	0	1		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-9|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.301736	1044.58892	0.50944	0.00026659	2.7838	0.0014567	3.2932	0.0017233	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.50848	1	10326	10326		58.782	19.529	1	3714800			53839	1308	37587	37649	59010	59010		38			0.06840724545190824
NIVNGMVLLV	10	Unmodified	_NIVNGMVLLV_					0	0	0			REV__ENST00000529484.5_1_11:117061404-117064733:+|nuORF	REV__ENST00000529484.5_1_11:117061404-117064733:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8087768554688	2	536.315177	1070.6158	-0.069479	-3.7262E-05	1.2239	0.0006564	1.1544	0.00061914	536.3156276420104	84.771	0.65883	84.771	84.3	84.958	0					24	15	2	0	0	0	0.03519	1	10637	10637		30.504	0	1	408320	+		53840	24688	37588	37650	59011	59011					0.08331833156398716
NIVNTFRI	8	Unmodified	_NIVNTFRI_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.78271484375	2	488.782359	975.550165	0.5948	0.00029073	-0.77359	-0.00037812	-0.17879	-8.739E-05	488.78187985732905	56.787	1.18	56.562	56.029	57.209	-0.2248					85	30	4	0	0	0	0.68164	1	6173	6173		68.787	11.334	1	6569200			53841	18160	37589	37651	59012	59012					0.06141180025713311
NIVNVFLLGT	10	Unmodified	_NIVNVFLLGT_					0	0	0			REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.31689453125	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.91678	3	11198	11186;11198;11330		52.937	15.125	1	11705000	+		53842	30319	37590	37652	59013;59014;59015	59014					0.08222889028502323
NIVNVFLLGT	10	Unmodified	_NIVNVFLLGT_					0	0	0			REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3165283203125	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	1.0002	1	10907	10907		45.972	8.1607	1	3438300	+		53843	30319	37590	37652	59016	59016					0.08222889028502323
NIVNVFLLGT	10	Unmodified	_NIVNVFLLGT_					0	0	0			REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.316650390625	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	1.0002	1	10872	10872		45.972	5.1941	1	3635800	+		53844	30319	37590	37652	59017	59017					0.08222889028502323
NIVNVFLLGT	10	Unmodified	_NIVNVFLLGT_					0	0	0			REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.31640625	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.0002	1	10645	10645		45.972	8.8131	1	4936700	+		53845	30319	37590	37652	59018	59018					0.08222889028502323
NIVNVFLLGT	10	Unmodified	_NIVNVFLLGT_					0	0	0			REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0002	1	10825	10825		45.972	5.1941	1	15621000	+		53846	30319	37590	37652	59019	59019					0.08222889028502323
NIVNVFLLGT	10	Unmodified	_NIVNVFLLGT_					0	0	0			REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.1088	1	10508	10508		31.53	1.0262	1	5204600	+		53847	30319	37590	37652	59020	59020					0.08222889028502323
NIVNVFLLGT	10	Unmodified	_NIVNVFLLGT_					0	0	0			REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3168334960938	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.74632	3	10836	10836;10896;11079		64.207	24.954	1	17068000	+		53848	30319	37590	37652	59021;59022;59023	59021					0.08222889028502323
NIVQQAID	8	Unmodified	_NIVQQAID_					0	0	0		ENST00000557141.1_1_14:68265921-68266314:+|nuORF	ENST00000557141.1_1_14:68265921-68266314:+|nuORF	ENST00000557141.1_1_14:68265921-68266314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.759033203125	2	450.742899	899.471246	-0.85233	-0.00038418	0.87618	0.00039493	0.02385	1.075E-05	450.74319765622215	44.799	0.682	44.651	44.256	44.938	-0.1488					42	19	3	0	0	0	0.027866	1	4257	4257		88.643	40.727	1	420140			53849	16727	37591	37653	59024	59024					0.017489080007635494
NIVQRVSDI	9	Unmodified	_NIVQRVSDI_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8126220703125	2	522.29583	1042.57711	-0.48498	-0.0002533	-1.0119	-0.00052851	-1.4969	-0.00078182	522.2961020901249	41.887	0.7612	41.755	41.455	42.216	-0.13219					34	20	3	0	0	0	0.024374	1	3778	3778		49.442	5.3247	1	470770	+		53850	20471	37592	37654	59025	59025					0.057522438462456194
NIVSLLQFI	9	Unmodified	_NIVSLLQFI_					0	0	0			REV__nc|ENSG00000110218|Q96RD7-2|PANX1	REV__nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.8167114257812	2	523.815867	1045.61718	0.40415	0.0002117	-0.3824	-0.00020031	0.021748	1.1392E-05	523.8155698967157	91.873	0.68878	91.883	91.615	92.304	0.009407					35	16	3	0	0	0	0.67687	1	11564	11564		47.657	6.8792	1	535280	+		53851	21846	37593	37655	59026	59026					0.0961979051680828
NIVSLLQFI	9	Unmodified	_NIVSLLQFI_					0	0	0			REV__nc|ENSG00000110218|Q96RD7-2|PANX1	REV__nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.815867	1045.61718	-1.417	-0.00074227	1.6001	0.00083815	0.18304	9.5881E-05	523.8165002867712	91.925	0.61861	91.925	91.597	92.216	0	0.021057	0.0014901	NaN	47.657	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451180	+		53852	21846	37593	37655							0.0961979051680828
NIVSLLQFI	9	Unmodified	_NIVSLLQFI_					0	0	0			REV__nc|ENSG00000110218|Q96RD7-2|PANX1	REV__nc|ENSG00000110218|Q96RD7-2|PANX1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	523.815867	1045.61718	0.40415	0.0002117	-0.3824	-0.00020031	0.021748	1.1392E-05	523.8155698967157	91.873	0.68878	91.883	91.615	92.304	0.009407	-0.021057	-0.00058678	NaN	47.657	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535280	+		53853	21846	37593	37655							0.0961979051680828
NIVVKTVE	8	Unmodified	_NIVVKTVE_					0	0	0		ENSG00000131095|ENST00000588735|GFAP	ENSG00000131095|ENST00000588735|GFAP	ENSG00000131095|ENST00000588735|GFAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.25201416015625	2	451.271293	900.528032	0.2453	0.0001107	-0.1524	-6.8773E-05	0.092897	4.1922E-05	451.2711483311752	75.046	0.40868	74.787	74.535	74.943	-0.25887					15	9	2	0	0	0	0.027866	1	9185	9185		11.511	0	1	261710			53854	4493	37594	37656	59027	59027					0.07378955557294375
NIVVSFLLQG	10	Unmodified	_NIVVSFLLQG_					0	0	0			REV__ENSG00000162896|ENST00000356495|PIGR	REV__ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3168334960938	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.118	1	10584	10584		30.318	1.1477	1	4888900	+		53855	25507	37595	37657	59028	59028					0.08222889028479585
NIVYNNIA	8	Unmodified	_NIVYNNIA_					0	0	0			REV__SLC2A2|p.G148Dfs*7|1|0.52|ENSG00000163581|chr3:171010011-171010011|C/-|frameshift_variant	REV__SLC2A2|p.G148Dfs*7|1|0.52|ENSG00000163581|chr3:171010011-171010011|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.2795104980469	2	460.745442	919.476331	0.11433	5.2678E-05	1.0504	0.00048397	1.1647	0.00053665	460.7456970407848	42.756	0.28878	42.617	42.448	42.737	-0.13929					10	7	2	0	0	0	0.027866	1	3938	3938		30.504	5.0535	1	69420	+		53856	25597	37596	37658	59029	59029					0.013372118633810715
NIVYVPKSLG	10	Unmodified	_NIVYVPKSLG_					0	0	0			REV__nc|ENSG00000182518|Q5XKR9|VCF2	REV__nc|ENSG00000182518|Q5XKR9|VCF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3162841796875	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.1266	1	10484	10484		29.17	0.020503	1	5204600	+		53857	36995	37597	37659	59030	59030					0.08222889028479585
NIWALILGIL	10	Unmodified	_NIWALILGIL_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185885|ENST00000408968|IFITM1	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8090209960938	2	563.35516	1124.69577	-0.41453	-0.00023353	-3.533	-0.0019903	-3.9475	-0.0022238	563.3531537609695	70.947	1.2858	70.958	70.593	71.879	0.010735					56	32	2	0	0	0	0.03519	1	8603	8603		30.504	1.3541	1	9595800			53858	5535	37598	37660	59031	59031					0.13840642821901383
NIWALILGIL	10	Unmodified	_NIWALILGIL_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185885|ENST00000408968|IFITM1	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.35516	1124.69577	0.4747	0.00026742	-4.4354	-0.0024987	-3.9607	-0.0022313	563.3526302869461	70.833	1.0018	70.833	70.526	71.528	0	-0.0642	-0.00020279	NaN	30.504	47	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9718400			53859	5535	37598	37660							0.13840642821901383
NIWALILGIL	10	Unmodified	_NIWALILGIL_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185885|ENST00000408968|IFITM1	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.35516	1124.69577	0.64052	0.00036084	-4.6248	-0.0026054	-3.9843	-0.0022446	563.3525728932633	71.19	1.2539	70.902	70.546	71.8	-0.28858	0.0041888	-0.00041618	NaN	30.504	54	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11274000			53860	5535	37598	37660							0.13840642821901383
NIWIPLLI	8	Unmodified	_NIWIPLLI_					0	0	0			REV__ENST00000504768.2_1_5:93246475-93410459:-|nuORF	REV__ENST00000504768.2_1_5:93246475-93410459:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2484436035156	2	491.310221	980.605889	0.15688	7.7075E-05	-0.34121	-0.00016764	-0.18433	-9.0562E-05	491.3099272165483	68.715	0.58143	68.423	68.171	68.753	-0.29267					23	14	2	0	0	0	0.027866	1	8205	8205		21.702	0	1	295920	+		53861	22065	37599	37661	59032	59032					0.114810132133357
NIWTTKVN	8	Unmodified	_NIWTTKVN_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.26788330078125	2	488.266542	974.51853	-0.80905	-0.00039503	4.0532	0.001979	3.2441	0.001584	488.26869525931835	43.619	1.4847	43.474	42.841	44.326	-0.14471					126	41	5	0	0	0	0.78825	1	4093	4093		60.118	5.3419	1	12505000	+		53862	23660	37600	37662	59033	59033					0.03025187271748564
NIWVKKRL	8	Unmodified	_NIWVKKRL_					0	0	0			REV__ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	REV__ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2817993164062	2	528.837468	1055.66038	-0.36457	-0.0001928	3.9843	0.0021071	3.6198	0.0019143	528.8394276748243	62.124	0.50611	61.91	61.7	62.206	-0.21375					24	12	3	0	0	0	0.027866	1	6975	6975		42.474	0	1	469180	+		53863	26796	37601	37663	59034	59034					0.13478025084759793
NIYHEAPLA	9	Unmodified	_NIYHEAPLA_					0	0	0			REV__TKTL1|p.C169Y|1|0.76|ENSG00000007350|chrX:154310991-154310991|G/A|missense_variant	REV__TKTL1|p.C169Y|1|0.76|ENSG00000007350|chrX:154310991-154310991|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3035888671875	2	514.263999	1026.51345	-0.70464	-0.00036237	4.0841	0.0021003	3.3794	0.0017379	514.7662003348385	53.681	0.59438	53.777	53.444	54.038	0.095665					31	16	3	0	0	0	0.024412	1	5714	5714		24.203	2.2429	1	282030	+		53864	37695	37602	37664	59035	59035					0.0012488340912568674
NIYKVLKP	8	Unmodified	_NIYKVLKP_					0	0	0		ENSG00000206562|ENST00000383790|METTL6	ENSG00000206562|ENST00000383790|METTL6	ENSG00000206562|ENST00000383790|METTL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2423400878906	2	487.805303	973.596052	-0.59659	-0.00029102	0.53156	0.0002593	-0.065031	-3.1722E-05	487.805452188245	60.957	0.60237	60.744	60.493	61.096	-0.21339					33	15	3	0	0	0	0.027866	1	7034	7034		25.45	7.1258	1	506100			53865	10474	37603	37665	59036	59036					0.10819825207943268
NIYMVSLVD	9	Unmodified	_NIYMVSLVD_					0	0	0			REV__ENST00000570036.5_1_16:84513521-84531159:-|nuORF	REV__ENST00000570036.5_1_16:84513521-84531159:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3146362304688	2	527.267893	1052.52123	1.0091	0.00053205	1.6722	0.00088171	2.6813	0.0014138	527.2683867055448	74.473	0.50194	74.473	74.215	74.717	0					17	11	2	0	0	0	0.023817	1	9136	9136		60.972	7.6205	1	104000	+		53866	24052	37604	37666	59037	59037					-0.002927253855887102
NIYPDVCSL	9	Carbamidomethyl (C)	_NIYPDVC(Carbamidomethyl (C))SL_	NIYPDVC(1)SL		NIYPDVC(99)SL		0	1	0			REV__ENSG00000232382|ENST00000642057|OR5K1	REV__ENSG00000232382|ENST00000642057|OR5K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8097534179688	2	540.755149	1079.49575	-0.49409	-0.00026718	0.94795	0.00051261	0.45386	0.00024543	540.755725325023	63.195	2.0059	63.195	62.572	64.578	0					79	53	2	0	0	0	0.022083	1	7484	7484		99.375	35.168	1	304600	+		53867	28903	37605	37667	59038	59038	378				-0.04082199908043549
NIYPDVCSL	9	Carbamidomethyl (C)	_NIYPDVC(Carbamidomethyl (C))SL_					0	1	0			REV__ENSG00000232382|ENST00000642057|OR5K1	REV__ENSG00000232382|ENST00000642057|OR5K1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.755149	1079.49575	-0.62101	-0.00033582	2.7913	0.0015094	2.1703	0.0011736	540.756793005804	63.335	0.27889	63.076	62.96	63.239	-0.25824	-0.046691	0.0019187	NaN	99.375	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83842	+		53868	28903	37605	37667			378				-0.04082199908043549
NIYPKMQIS	9	Unmodified	_NIYPKMQIS_					0	0	0		ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2550048828125	2	547.289159	1092.56377	-0.79406	-0.00043458	0.40955	0.00022414	-0.38451	-0.00021044	547.2895041643696	65.5	1.02	65.249	64.946	65.966	-0.25112					60	24	4	0	0	0	0.024427	1	7542	7542		26.693	6.6961	1	560370			53869	14094	37606	37668	59039	59039					0.021186697426401224
NIYRVPPN	8	Unmodified	_NIYRVPPN_					0	0	0		nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.79412841796875	2	486.766709	971.518865	-0.55912	-0.00027216	-3.1879	-0.0015518	-3.747	-0.0018239	486.76492661817605	28.372	0.42279	28.368	28.117	28.54	-0.0042019					16	9	2	0	0	0	0.027866	1	1618	1618		33.516	9.3128	1	83137			53870	5780	37607	37669	59040	59040					0.03196606991616591
NIYSTLINV	9	Unmodified	_NIYSTLINV_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7877807617188	2	518.787307	1035.56006	0.91088	0.00047255	-0.91388	-0.00047411	-0.0029978	-1.5552E-06	518.7868503962277	85.554	0.98141	85.404	85.114	86.095	-0.14967					49	21	3	0	0	0	0.28753	1	10369	10369		77.318	9.8239	1	351170	+		53871	21420	37608	37670	59041	59041					0.043703232404368464
NIYTYPAW	8	Unmodified	_NIYTYPAW_					0	0	0		ENSG00000132164|ENST00000254488|SLC6A11;ENST00000464828.1_1_3:10975690-10977074:+|nuORF	ENSG00000132164|ENST00000254488|SLC6A11	ENSG00000132164|ENST00000254488|SLC6A11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.777099609375	2	514.247818	1026.48108	-0.31149	-0.00016018	0.752	0.00038671	0.44051	0.00022653	514.247430618192	75.559	0.40239	75.3	75.075	75.477	-0.25866					11	9	2	0	0	0	0.027866	1	8947	8947		25.45	0	1	71942			53872	4578	37609	37671	59042	59042					-0.031099039938681017
NIYVKILR	8	Unmodified	_NIYVKILR_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|44|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|44|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|44|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7891540527344	2	509.824027	1017.6335	0.25804	0.00013155	1.1772	0.00060015	1.4352	0.0007317	509.8239256450223	85.912	0.17044	85.717	85.594	85.764	-0.19508					6	3	2	0	0	0	0.027866	1	10405	10405		19.36	1.0356	1	24263			53873	17886	37610	37672	59043	59043					0.12538916473556583
NIYWVALVL	9	Unmodified	_NIYWVALVL_					0	0	0			REV__ENST00000340124.8_1_16:46964499-46964547:+|nuORF	REV__ENST00000340124.8_1_16:46964499-46964547:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7822875976562	2	545.81841	1089.62227	-0.19857	-0.00010838	0.034719	1.895E-05	-0.16385	-8.9432E-05	545.8182570904179	75.269	0.66393	74.997	74.681	75.345	-0.27266					26	15	2	0	0	0	0.024517	1	8923	8923		12.959	0	1	885640	+		53874	30612	37611	37673	59044	59044					0.08104094379405069
NIYYKSDL	8	Unmodified	_NIYYKSDL_					0	0	0		ENSG00000124713|ENST00000372808|GNMT	ENSG00000124713|ENST00000372808|GNMT	ENSG00000124713|ENST00000372808|GNMT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.80023193359375	2	508.258382	1014.50221	-0.3879	-0.00019715	1.0639	0.00054071	0.67596	0.00034356	508.25914854838544	31.142	0.55075	30.99	30.681	31.232	-0.15231					22	13	2	0	0	0	0.027866	1	2013	2013		45.952	0	1	89501			53875	4070	37612	37674	59045	59045					-0.004459386850044211
NIYYLPAVF	9	Unmodified	_NIYYLPAVF_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2753295898438	2	550.294768	1098.57498	-0.12257	-6.7447E-05	0.03984	2.1924E-05	-0.082725	-4.5523E-05	550.7971707878085	51.024	0.14957	51.024	50.956	51.105	0					5	3	2	0	0	0	0.024535	1	5385	5385		18.324	0	1	84223	+		53876	25033	37613	37675	59046	59046					0.029638151084100173
NKAAKRVK	8	Unmodified	_NKAAKRVK_					0	0	0			REV__CAMKV|p.E70K|1|0.62|ENSG00000164076|chr3:49862064-49862064|C/T|missense_variant	REV__CAMKV|p.E70K|1|0.62|ENSG00000164076|chr3:49862064-49862064|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.7641296386719	2	457.798343	913.582134	1.3785	0.00063107	0.49304	0.00022571	1.8715	0.00085678	457.7977702000056	19.216	0.63802	19.216	18.873	19.511	0					22	12	3	0	0	0	0.027866	1	416	416		7.6903	0.49693	1	89716	+		53877	19240	37614	37676	59047	59047					0.12188592499501283
NKACRKNL	8	Unmodified	_NKACRKNL_					0	0	0		nc|ENSG00000179676|Q7Z4B0-2|LINC00305;nc|ENSG00000179676|Q7Z4B0|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7503662109375	2	473.766186	945.517819	-0.0022645	-1.0728E-06	-4.2967	-0.0020356	-4.2989	-0.0020367	473.76431213140404	28.48	0.79774	28.476	28.078	28.875	-0.0042019					50	18	4	0	0	0	0.027866	1	1631	1631		40.573	10.069	1	962920			53878	18556	37615	37677	59048	59048					0.04288069351059676
NKAESSGKW	9	Unmodified	_NKAESSGKW_					0	0	0		nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000413697.5_1_2:100019089-100065949:-|nuORF	nc|ENSG00000135945|Q9UBZ9-2|REV1	nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.75128173828125	2	503.751256	1005.48796	-0.034855	-1.7558E-05	-0.35846	-0.00018057	-0.39331	-0.00019813	503.7510661414255	34.015	1.1796	33.791	33.2	34.379	-0.22412					97	29	5	0	0	0	0.93097	1	2501	2501		30.318	1.1682	1	9314000			53879	4957	37616	37678	59049	59049					-0.014565911132876863
NKAGGKNKP	9	Unmodified	_NKAGGKNKP_					0	0	0			REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2640380859375	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	0.83071	1	9976	9976		37.159	0	1	4140300	+		53880	28133	37617	37679	59050	59050					0.054357228488470355
NKAGRQLAVG	10	Unmodified	_NKAGRQLAVG_					0	0	0			REV__ENST00000381055.7_1_5:64777255-64777318:-|nuORF	REV__ENST00000381055.7_1_5:64777255-64777318:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29144287109375	2	507.296165	1012.57778	-0.14845	-7.5308E-05	-4.1692	-0.002115	-4.3177	-0.0021903	507.2939162989204	50.611	0.1728	50.462	50.322	50.495	-0.14915					5	4	2	0	0	0	0.03519	1	5282	5282		21.96	8.1846	1	97118	+		53881	31505	37618	37680	59051	59051					0.07199083285934194
NKAGRQLAVG	10	Unmodified	_NKAGRQLAVG_					0	0	0			REV__ENST00000381055.7_1_5:64777255-64777318:-|nuORF	REV__ENST00000381055.7_1_5:64777255-64777318:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.296165	1012.57778	-0.27946	-0.00014177	-10.604	-0.0053796	-10.884	-0.0055214	507.28956748771606	50.826	0.38864	50.826	50.642	51.03	0	0.18163	-0.0031954	NaN	14.865	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263640	+		53882	31505	37618	37680							0.07199083285934194
NKAKDVCL	8	Unmodified	_NKAKDVCL_					0	0	0		ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2252502441406	2	445.741845	889.469137	-0.40213	-0.00017925	-3.1928	-0.0014232	-3.595	-0.0016024	445.74021678098325	30.834	0.9454	30.592	30.166	31.112	-0.24109					42	22	2	0	0	0	0.027866	1	1961	1961		24.203	10.066	1	376070			53883	9423	37619	37681	59052	59052					0.019981559912935154
NKALDLQS	8	Unmodified	_NKALDLQS_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2252502441406	2	444.742899	887.471246	-0.56205	-0.00024997	0.9673	0.0004302	0.40525	0.00018023	444.74324721895033	29.876	1.0066	29.632	29.317	30.323	-0.24415					41	23	3	0	0	0	0.027866	1	1961	1961		42.396	7.2441	1	406870			53884	7772	37620	37682	59053	59053					0.023009080007682314
NKAPGKKKK	9	Unmodified	_NKAPGKKKK_					0	0	0		ENSG00000090889|ENST00000374403|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.8270568847656	2	499.827101	997.639649	-0.40595	-0.0002029	-0.39627	-0.00019807	-0.80222	-0.00040097	499.82694457385327	22.035	1.3595	21.844	21.42	22.779	-0.19072					73	28	5	0	0	0	0.94809	2	721	721;729		29.15	1.2673	1	4660500			53885	1943	37621	37683	59054;59055	59054					0.1407343470507385
NKARAKEL	8	Unmodified	_NKARAKEL_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2799377441406	2	465.279983	928.545414	-0.14705	-6.8421E-05	-0.0093294	-4.3408E-06	-0.15638	-7.2762E-05	465.2799182394463	24.656	0.58713	24.441	24.177	24.764	-0.2151					29	13	3	0	0	0	0.6536	1	1109	1109		71.296	7.0884	1	1760600	+		53886	21449	37622	37684	59056	59056					0.07828295882939074
NKARAKEL	8	Unmodified	_NKARAKEL_					0	0	0			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.2801513671875	2	465.279983	928.545414	1.9761	0.00091944	-1.9775	-0.00092008	-0.0013731	-6.3887E-07	465.278980601381	24.53	0.65334	24.349	24.114	24.767	-0.18089					38	14	4	0	0	0	0.845	1	1054	1054		55.504	4.1688	1	1872200	+		53887	21449	37622	37684	59057	59057					0.07828295882939074
NKARRKLI	8	Unmodified	_NKARRKLI_					0	0	0			REV__ENST00000604273.1_2_1:145515521-145515950:-|nuORF	REV__ENST00000604273.1_2_1:145515521-145515950:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7784118652344	2	499.832717	997.650882	-0.069455	-3.4716E-05	2.337	0.0011681	2.2676	0.0011334	499.8337212277623	68.959	0.41331	68.974	68.795	69.209	0.015121					15	10	2	0	0	0	0.027866	1	8234	8234		38.806	22.333	1	113260	+		53888	30224	37623	37685	59058	59058					0.1519625679922001
NKARRSRSA	9	Unmodified	_NKARRSRSA_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3035278320312	2	523.302313	1044.59007	0.13302	6.9608E-05	0.95699	0.0005008	1.09	0.0005704	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.77768	1	11003	11003		40.778	0	1	10615000			53889	6362	37624	37686	59059	59059					0.0695611974899748
NKARTALL	8	Unmodified	_NKARTALL_					0	0	0		ENSG00000097096|ENST00000341460|SYDE2;nc|ENSG00000097096|Q5VT97-2|SYDE2;ENST00000234668.6_1_1:85647735-85666124:-|nuORF	ENSG00000097096|ENST00000341460|SYDE2	ENSG00000097096|ENST00000341460|SYDE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.77911376953125	2	443.777077	885.5396	1.469	0.00065191	3.3584	0.0014904	4.8274	0.0021423	443.77844524287576	74.021	1.3754	74.021	73.741	75.116	0					52	32	2	0	0	0	0.77775	1	9055	9055		60.972	0	1	2196900			53890	2059	37625	37687	59060	59060					0.09225197371267768
NKAYQQLSGL	10	Unmodified	_NKAYQQLSGL_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.7824096679688	2	561.301113	1120.58767	-1.0258	-0.00057579	-4.3922	-0.0024653	-5.418	-0.0030411	561.2991393350875	64.559	0.41975	64.296	64.193	64.613	-0.2626					16	10	2	0	0	0	0.03519	1	7581	7581		31.53	0	1	201080			53891	9362	37626	37688	59061	59061					0.03220226500661738
NKCVGPFVE	9	Unmodified	_NKCVGPFVE_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.29522705078125	2	496.747127	991.479702	-0.6127	-0.00030436	-3.0343	-0.0015073	-3.647	-0.0018116	496.7452967076481	41.492	0.95203	41.262	40.809	41.761	-0.23029					42	24	2	0	0	0	0.02435	1	3613	3613		34.173	0	1	188220	+		53892	25978	37627	37689	59062	59062					-0.01637861354265624
NKDALQPI	8	Unmodified	_NKDALQPI_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L;nc|ENSG00000153157|Q5T4T6-2|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2638244628906	2	449.753267	897.491981	0.43139	0.00019402	-0.17311	-7.7855E-05	0.25829	0.00011617	449.753026374999	61.325	1.0254	61.325	60.807	61.832	0					35	26	2	0	0	0	0.027866	1	7083	7083		55.504	0	1	1283000			53893	6324	37628	37690	59063	59063					0.03913498380427427
NKDCRRLW	8	Carbamidomethyl (C)	_NKDC(Carbamidomethyl (C))RRLW_	NKDC(1)RRLW		NKDC(110)RRLW		0	1	0		ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.2921142578125	2	574.293099	1146.57165	-0.65555	-0.00037648	-1.1989	-0.00068854	-1.8545	-0.001065	574.2920372411556	65.046	0.88304	64.79	64.465	65.348	-0.25563					64	21	4	0	0	0	0.33369	2	7401	7401;7433		106.42	18.93	1	7324800			53894	7782	37629	37691	59064;59065	59064	93				0.004222417827577374
NKDELRIV	8	Unmodified	_NKDELRIV_					0	0	0			REV__nc|ENSG00000172548|Q0D2K0-2|NIPAL4	REV__nc|ENSG00000172548|Q0D2K0-2|NIPAL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.78466796875	2	493.785099	985.555644	-0.039765	-1.9635E-05	-0.5229	-0.0002582	-0.56266	-0.00027783	493.78482204656893	56.714	1.0029	56.714	56.07	57.073	0					88	28	5	0	0	0	0.5947	1	6344	6344		76.774	4.8967	1	7528300	+		53895	19445	37630	37692	59066	59066					0.06228858817519267
NKDGFLGG	8	Unmodified	_NKDGFLGG_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.2325744628906	2	404.20341	806.392267	0.29171	0.00011791	-2.6842	-0.001085	-2.3925	-0.00096705	404.2021475766631	84.581	0.5937	84.444	84.194	84.788	-0.13788					16	13	2	0	0	0	0.027866	1	10257	10257		40.778	3.6191	1	47997			53896	836	37631	37693	59067	59067					-0.01867319233519993
NKDLDLPLA	9	Unmodified	_NKDLDLPLA_					0	0	0			REV__nc|ENSG00000125388|P32298-2|GRK4	REV__nc|ENSG00000125388|P32298-2|GRK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8034362792969	2	499.779482	997.544411	-0.87737	-0.00043849	1.8816	0.00094039	1.0042	0.0005019	499.78041301569317	53.368	0.50739	53.22	52.985	53.493	-0.14723					23	13	2	0	0	0	0.024374	1	5764	5764		49.442	17.912	1	458990	+		53897	22812	37632	37694	59068	59068					0.045540367233684265
NKDVLDVYI	9	Unmodified	_NKDVLDVYI_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.784423828125	2	539.792589	1077.57063	-0.85582	-0.00046197	1.1334	0.0006118	0.27758	0.00014983	539.793042250561	72.933	0.86417	72.933	72.573	73.438	0					64	21	4	0	0	0	0.024397	1	8854	8854		47.657	9.8458	1	3985900			53898	7574	37633	37695	59069	59069					0.03494305894855643
NKDYYPIP	8	Unmodified	_NKDYYPIP_					0	0	0			REV__ENST00000601785.5_1_19:51728415-51738809:+|nuORF	REV__ENST00000601785.5_1_19:51728415-51738809:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.78082275390625	2	505.2531	1008.49165	-0.62181	-0.00031417	-3.968	-0.0020048	-4.5898	-0.002319	505.25073913991656	83.034	0.46758	83.06	82.917	83.384	0.026558					16	10	2	0	0	0	0.027866	1	10301	10301		47.916	0	1	61524	+		53899	21522	37634	37696	59070	59070					-0.012259213394486324
NKEDILKIVGP	11	Unmodified	_NKEDILKIVGP_					0	0	0		PLSCR5|p.I209Lfs*18|1|0.15|ENSG00000231213|chr3:146589806-146589806|G/-|frameshift_variant;nc|ENSG00000231213|A0PG75-2|PLSCR5;ENSG00000231213|ENST00000443512|PLSCR5	PLSCR5|p.I209Lfs*18|1|0.15|ENSG00000231213|chr3:146589806-146589806|G/-|frameshift_variant	PLSCR5|p.I209Lfs*18|1|0.15|ENSG00000231213|chr3:146589806-146589806|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.509765625	3	409.243206	1224.70779	0.5377	0.00022005	-2.1472	-0.00087871	-1.6094	-0.00065866	409.2422600194562	27.877	0.60771	27.958	27.722	28.329	0.081293					32	14	3	0	0	0	0.024746	1	1536	1536		29.245	0	1	297750			53900	10696	37635	37697	59071	59071					0.10442214774411696
NKEDVYEYYQ	10	Unmodified	_NKEDVYEYYQ_					0	0	0		nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7843933105469	3	450.866464	1349.57756	-0.31453	-0.00014181	-2.3445	-0.001057	-2.659	-0.0011988	450.8650864443254	28.632	0.16611	28.627	28.499	28.665	-0.0042019					5	3	2	0	0	0	0.03519	1	1675	1675		24.232	0	1	33665			53901	5826	37636	37698	59072	59072					-0.08324426015224162
NKEEVKSSEP	10	Unmodified	_NKEEVKSSEP_					0	0	0		nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.751220703125	2	573.785492	1145.55643	-0.34793	-0.00019964	0.35955	0.00020631	0.011624	6.6699E-06	573.7853448380702	30.726	0.66656	30.481	30.205	30.872	-0.24415					29	15	3	0	0	0	0.03519	1	1966	1966		51.193	14.746	1	241420			53902	18384	37637	37699	59073	59073					-0.010523913240831462
NKEEVKSSEP	10	Unmodified	_NKEEVKSSEP_					0	0	0		nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7515869140625	2	573.785492	1145.55643	-0.73785	-0.00042337	1.5822	0.00090787	0.84439	0.0004845	573.7861848882496	30.61	0.62584	30.432	30.083	30.708	-0.17818					25	14	3	0	0	0	0.03519	1	1929	1929		36.447	7.2767	1	252490			53903	18384	37637	37699	59074	59074					-0.010523913240831462
NKEEVKSSEP	10	Unmodified	_NKEEVKSSEP_					0	0	0		nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.751220703125	2	573.785492	1145.55643	-0.22456	-0.00012885	0.8768	0.0005031	0.65224	0.00037425	573.7858993490873	30.66	0.50737	30.51	30.219	30.727	-0.14952					27	11	3	0	0	0	0.03519	1	1917	1917		69.628	8.6557	1	253490			53904	18384	37637	37699	59075	59075					-0.010523913240831462
NKEGEELID	9	Unmodified	_NKEGEELID_					0	0	0			REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8187255859375	2	523.753661	1045.49277	-1.1614	-0.00060827	-1.0968	-0.00057445	-2.2582	-0.0011827	523.7529298459217	54.432	0.96897	54.432	54.01	54.979	0					55	27	4	0	0	0	0.024257	1	5945	5945		58.23	10.314	1	958260	+		53905	22598	37638	37700	59076	59076					-0.02815751761181673
NKEGEELID	9	Unmodified	_NKEGEELID_					0	0	0			REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8191528320312	2	523.753661	1045.49277	0.65866	0.00034497	-2.8844	-0.0015107	-2.2257	-0.0011657	523.7519462104561	54.216	0.65227	54.314	53.973	54.626	0.098015					44	18	3	0	0	0	0.023061	1	5852	5852		69.628	14.851	1	921770	+		53906	22598	37638	37700	59077	59077					-0.02815751761181673
NKEGEELID	9	Unmodified	_NKEGEELID_					0	0	0			REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.753661	1045.49277	0.87387	0.00045769	-4.2825	-0.002243	-3.4086	-0.0017853	523.751748939881	54.641	0.45217	54.435	54.122	54.575	-0.20613	0.048965	-0.0023717	NaN	69.628	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116840	+		53907	22598	37638	37700							-0.02815751761181673
NKEGSLEE	8	Unmodified	_NKEGSLEE_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2375793457031	2	453.214172	904.413791	0.0082743	3.75E-06	1.5613	0.00070762	1.5696	0.00071137	453.2147815639046	27.591	0.72689	27.349	26.954	27.68	-0.24217					23	16	2	0	0	0	0.027866	1	1484	1484		17.365	0	1	68693	+		53908	19290	37639	37701	59078	59078					-0.04223978995469224
NKEGTIIRVPN	11	Unmodified	_NKEGTIIRVPN_					0	0	0			REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.2585144042969	3	414.238455	1239.69353	-0.74944	-0.00031045	-3.6524	-0.001513	-4.4019	-0.0018234	414.23702145904844	38.818	0.39432	38.597	38.498	38.892	-0.22149					16	10	2	0	0	0	0.024747	1	3239	3239		39.873	17.312	1	195750	+		53909	22393	37640	37702	59079	59079					0.08327562346153172
NKEKRSIISSP	11	Unmodified	_NKEKRSIISSP_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7437744140625	3	420.241976	1257.7041	-0.49118	-0.00020641	-0.098459	-4.1377E-05	-0.58964	-0.00024779	420.24169812663877	27.799	0.38323	27.799	27.616	27.999	0					15	9	2	0	0	0	0.024739	1	1555	1555		22.562	0	1	96266	+		53910	23660	37641	37703	59080	59080					0.08555545000581333
NKEKRSIISSP	11	Unmodified	_NKEKRSIISSP_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	420.241976	1257.7041	0.024275	1.0201E-05	0.44123	0.00018542	0.4655	0.00019562	420.24227341374916	27.822	0.57642	27.67	27.27	27.847	-0.15195	-0.063016	0.001192	NaN	22.562	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130790	+		53911	23660	37641	37703							0.08555545000581333
NKELKASE	8	Unmodified	_NKELKASE_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.748182	917.481811	-0.70087	-0.00032223	0.35201	0.00016183	-0.34887	-0.00016039	459.7483824163889	26.538	0.55347	26.374	26.069	26.622	-0.16331					24	14	2	0	0	0	0.027866	1	1324	1324		49.442	0	1	235780			53912	7225	37642	37704	59081	59081					0.01976890655180341
NKEMKNKAV	9	Unmodified	_NKEMKNKAV_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ZMYM2|p.E1097Vfs*5|1|0.27|ENSG00000121741|chr13:20067007-20067008|GA/-|frameshift_variant	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3003540039062	2	531.292233	1060.56991	-0.31306	-0.00016633	-2.7385	-0.001455	-3.0516	-0.0016213	531.2907093836516	38.607	0.49367	38.388	38.15	38.643	-0.21848					26	12	3	0	0	0	0.024427	1	3219	3219		19.997	3.5236	1	471830			53913	3883	37643	37705	59082	59082					0.042051879741620724
NKENTPRNV	9	Unmodified	_NKENTPRNV_					0	0	0		nc|ENSG00000152595|Q9NQ76-3|MEPE;ENSG00000152595|ENST00000361056|MEPE;nc|ENSG00000152595|Q9NQ76-2|MEPE;MEPE|p.E167K|1|0.15|ENSG00000152595|chr4:87845367-87845367|G/A|missense_variant	nc|ENSG00000152595|Q9NQ76-3|MEPE	nc|ENSG00000152595|Q9NQ76-3|MEPE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3060913085938	2	536.280712	1070.54687	-1.3875	-0.00074409	-1.9621	-0.0010522	-3.3496	-0.0017963	536.782035660811	47.727	0.24601	47.786	47.585	47.831	0.059097					15	7	3	0	0	0	0.024466	1	4723	4723		39.253	0	1	3126100			53914	6286	37644	37706	59083	59083					0.014418851810432898
NKESIPSLPQS	11	Unmodified	_NKESIPSLPQS_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073974609375	3	400.547065	1198.61937	-0.56779	-0.00022743	2.2302	0.00089329	1.6624	0.00066587	400.54744970550115	27.628	0.49908	27.472	27.225	27.724	-0.15664					16	11	2	0	0	0	0.024731	1	1531	1531		10.562	0	1	133790			53915	1189	37645	37707	59084	59084					0.028001744639595927
NKESTFTE	8	Unmodified	_NKESTFTE_					0	0	0			REV__ENSG00000197343|ENST00000252713|ZNF655	REV__ENSG00000197343|ENST00000252713|ZNF655	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2354431152344	2	478.221997	954.429441	-0.098752	-4.7225E-05	0.94961	0.00045413	0.85086	0.0004069	478.2224574544875	45.33	1.2031	45.374	44.722	45.925	0.043877					47	34	2	0	0	0	0.027866	1	4271	4271		40.573	1.7665	1	191140	+		53916	28292	37646	37708	59085	59085					-0.04959692478416855
NKESVHVL	8	Unmodified	_NKESVHVL_					0	0	0			REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF;REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7966613769531	2	463.258717	924.50288	0.19122	8.8583E-05	0.50828	0.00023546	0.6995	0.00032405	463.2586449317685	32.112	0.50352	32.175	31.961	32.465	0.062885					17	12	2	0	0	0	0.027866	1	2186	2186		42.474	0	1	123810	+		53917	20556;24730	37647	37709	59086	59086					0.03760900754718932
NKETLPAP	8	Unmodified	_NKETLPAP_					0	0	0		ENSG00000162105|ENST00000601538|SHANK2;nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	ENSG00000162105|ENST00000601538|SHANK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.2472839355469	2	435.239993	868.465432	-0.40171	-0.00017484	1.8242	0.00079397	1.4225	0.00061913	435.240657150541	29.669	0.79999	29.672	29.276	30.076	0.0031357					36	19	3	0	0	0	0.027866	1	1769	1769		44.117	0	1	225620			53918	6920	37648	37710	59087	59087					0.025938094890875618
NKEVKNAVIRV	11	Unmodified	_NKEVKNAVIRV_					0	0	0		ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	MSMS	OPSCC_39_ClassI_Rep-2	2	635.3886108398438	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.66	1	104.66	104.16	105.16	0.00096893								0	0	0	1.0224	1	13397	13397		42.864	8.6917	1				53919	9067	37649	37711	59088	59088					0.132841281341598
NKFCLLPML	9	Unmodified	_NKFCLLPML_					0	0	0			REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF	REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.8030395507812	2	539.793023	1077.57149	-0.66424	-0.00035855	-2.1066	-0.0011371	-2.7708	-0.0014957	540.2937169410359	94.448	0.79395	94.447	94.072	94.866	-0.00022888					36	18	3	0	0	0	0.024436	1	11934	11934		38.806	13.356	1	124070	+		53920	29884	37650	37712	59089	59089					0.035811057385444656
NKFCLLPML	9	Unmodified	_NKFCLLPML_					0	0	0			REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF	REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.793023	1077.57149	-0.54313	-0.00029318	-1.27	-0.00068555	-1.8132	-0.00097873	540.293700747971	94.63	0.72351	94.63	94.283	95.007	0	0.091563	0.00039538	NaN	47.916	35	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127540	+		53921	29884	37650	37712							0.035811057385444656
NKFDKTIKA	9	Unmodified	_NKFDKTIKA_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ASPH|p.L345H|1|0.22|ENSG00000198363|chr8:61583972-61583972|A/T|missense_variant;ENST00000523897.5_1_8:62496079-62555960:-|nuORF	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8082275390625	2	532.808574	1063.60259	0.47364	0.00025236	1.2135	0.00064657	1.6871	0.00089893	532.808854512292	71.179	1.5589	70.89	70.459	72.018	-0.28858					122	39	6	0	0	0	0.70186	1	8579	8579		45.952	4.5253	1	3231400			53922	10127	37651	37713	59090	59090					0.07333718368658992
NKFIDFKTP	9	Unmodified	_NKFIDFKTP_					0	0	0			REV__ENST00000347464.9_1_2:234203508-234203670:+|nuORF	REV__ENST00000347464.9_1_2:234203508-234203670:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.3067626953125	2	555.303124	1108.5917	2.9219	0.0016226	3.6071	0.0020031	6.5291	0.0036256	555.3050056666576	19.233	0.64164	19.299	19.093	19.735	0.066195					26	12	3	0	0	0	0.72875	1	356	356		44.117	1.7207	1	114540	+		53923	30706	37652	37714	59091	59091					0.04174315994373501
NKFIGYLK	8	Unmodified	_NKFIGYLK_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.78314208984375	2	491.789653	981.564752	0.44156	0.00021715	2.7159	0.0013356	3.1574	0.0015528	491.7907814093108	78.362	0.68644	78.131	77.877	78.563	-0.23141					33	15	3	0	0	0	0.027866	1	9321	9321		33.516	0	1	456680			53924	7383	37653	37715	59092	59092					0.07323252173864603
NKFIILVTN	9	Unmodified	_NKFIILVTN_					0	0	0			REV__ENSG00000181333|ENST00000315765|HEPHL1	REV__ENSG00000181333|ENST00000315765|HEPHL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.319091796875	2	531.321317	1060.62808	-0.23535	-0.00012505	-3.8656	-0.0020539	-4.1009	-0.0021789	531.3191412053131	93.774	1.1463	93.652	93.234	94.381	-0.12215					96	26	5	0	0	0	0.72494	1	11554	11554		44.377	0.26039	1	3642300	+		53925	27397	37654	37716	59093	59093					0.10019192891127204
NKFIINVKD	9	Unmodified	_NKFIINVKD_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000031900	REV__CON__ENSEMBL:ENSBTAP00000031900	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3016357421875	2	545.816399	1089.61824	0.021574	1.1775E-05	2.2426	0.0012241	2.2642	0.0012358	545.8183097975555	62.983	0.12237	63.037	62.931	63.054	0.054104					4	2	2	0	0	0	0.024263	1	7265	7265		60.972	11.53	1	76581	+	+	53926	19528	37655	37717	59094	59094					0.07702004885732094
NKFIKLNN	8	Unmodified	_NKFIKLNN_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2275085449219	2	495.790184	989.565815	-0.25304	-0.00012545	-0.20076	-9.9536E-05	-0.4538	-0.00022499	495.78961458693027	38.831	0.67451	38.831	38.473	39.148	0					23	17	2	0	0	0	0.027866	1	3231	3231		16.473	4.2663	1	213290	+		53927	19207	37656	37718	59095	59095					0.0706146654274562
NKFIKLNN	8	Unmodified	_NKFIKLNN_					0	0	0			REV__BICD2-IPPK|1|fusion	REV__BICD2-IPPK|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.790184	989.565815	-1.0584	-0.00052472	0.36476	0.00018085	-0.69359	-0.00034387	495.7900791076345	38.878	0.59367	38.905	38.651	39.245	0.027275	0.12311	2.1933E-05	NaN	16.473	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386310	+		53928	19207	37656	37718							0.0706146654274562
NKFIKVISN	9	Unmodified	_NKFIKVISN_					0	0	0			REV__ENSG00000184432|ENST00000333188|COPB2	REV__ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165893554688	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	0.82115	1	10370	10370		37.812	2.1932	1	1297700	+		53929	27668	37657	37719	59096	59096					0.09498308748356976
NKFKNCPL	8	Unmodified	_NKFKNCPL_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__ENSG00000142949|ENST00000359947|PTPRF;REV__nc|ENSG00000153707|P23468-7|PTPRD;REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7767639160156	2	482.257662	962.500772	0.9037	0.00043582	3.1222	0.0015057	4.0259	0.0019415	482.25891880732456	96.769	1.2166	96.769	96.152	97.369	-3.8147E-05					33	27	2	0	0	0	0.027866	1	12337	12337		19.36	0	1	230130	+		53930	21525;24188;36796;24908	37658	37720	59097	59097					0.018021487452415386
NKFLSKSK	8	Unmodified	_NKFLSKSK_					0	0	0			REV__ENSG00000151552|ENST00000281243|QDPR	REV__ENSG00000151552|ENST00000281243|QDPR	MSMS	OPSCC_39_ClassI_Rep-1	1	476.2849426269531	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.05	1	102.05	101.55	102.55	0								0	0	0	0.8743	1	13071	13071		29.15	3.6994	1		+		53931	24777	37659	37721	59098	59098					0.07766064168481535
NKFPDLYSD	9	Unmodified	_NKFPDLYSD_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.7767333984375	2	549.758746	1097.50294	-0.1307	-7.1853E-05	1.17	0.00064321	1.0393	0.00057136	550.2608049140208	78.21	0.25752	78.054	77.87	78.128	-0.15591					7	5	2	0	0	0	0.024477	1	9316	9316		27.882	1.0861	1	51062			53932	6396	37660	37722	59099	59099					-0.04191144035939942
NKFQRVDPD	9	Unmodified	_NKFQRVDPD_					0	0	0		ENSG00000154640|ENST00000348354|BTG3;nc|ENSG00000154640|Q14201-2|BTG3	ENSG00000154640|ENST00000348354|BTG3	ENSG00000154640|ENST00000348354|BTG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.791748046875	2	559.783087	1117.55162	-0.49646	-0.00027791	-3.3977	-0.001902	-3.8942	-0.0021799	559.7813216304249	65.251	0.48697	65.016	64.768	65.255	-0.2345					18	11	2	0	0	0	0.024541	1	7445	7445		24.203	13.337	1	123300			53933	6421	37661	37723	59100	59100					-0.0024523067620521033
NKFRDLSP	8	Unmodified	_NKFRDLSP_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7622375488281	2	488.764166	975.513779	0.1324	6.4713E-05	0.25859	0.00012639	0.39099	0.0001911	488.764351492837	40.496	0.80736	40.496	40.137	40.944	0					57	22	4	0	0	0	0.74904	2	3574	3574;3586		63.306	11.971	1	4990600			53934	5056	37662	37724	59101;59102	59101					0.025043031289897044
NKFRDLSP	8	Unmodified	_NKFRDLSP_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.784423828125	2	488.764166	975.513779	0.72542	0.00035456	-0.27609	-0.00013494	0.44934	0.00021962	488.76408032927475	40.617	0.88821	40.494	40.198	41.086	-0.12301					59	24	4	0	0	0	0.027866	1	3566	3566		73.975	13.003	1	4572900			53935	5056	37662	37724	59103	59103					0.025043031289897044
NKFRDLSP	8	Unmodified	_NKFRDLSP_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7623596191406	2	488.764166	975.513779	-0.77891	-0.0003807	1.1084	0.00054174	0.32949	0.00016104	488.7647725641174	40.656	0.72365	40.679	40.387	41.111	0.023006					47	20	3	0	0	0	0.87148	1	3547	3547		53.351	5.4358	1	4827900			53936	5056	37662	37724	59104	59104					0.025043031289897044
NKFRITSD	8	Unmodified	_NKFRITSD_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.3138427734375	2	490.761623	979.508694	-1.6314	-0.00080061	1.8327	0.00089943	0.20135	9.8813E-05	490.7622602145833	29.16	0.34637	28.914	28.753	29.099	-0.24524					12	7	2	0	0	0	0.027866	1	1756	1756		25.45	0	1	85029			53937	1175;38049	37663	37725	59105	59105					0.01811999266362818
NKFVNGMAY	9	Unmodified	_NKFVNGMAY_					0	0	0			REV__ENSG00000068097|ENST00000184956|HEATR6	REV__ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2737426757812	2	522.252577	1042.4906	-1.7072	-0.00089158	2.7087	0.0014146	1.0015	0.00052303	522.2538724457195	90.506	0.71432	90.506	90.173	90.887	0					34	16	3	0	0	0	0.024541	1	11489	11489		17.365	0	1	350480	+		53938	20372	37664	37726	59106	59106					-0.028944589799721143
NKFWPEMV	8	Unmodified	_NKFWPEMV_					0	0	0		ENST00000609376.5_2_2:145276374-145277833:+|nuORF	ENST00000609376.5_2_2:145276374-145277833:+|nuORF	ENST00000609376.5_2_2:145276374-145277833:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7437744140625	2	525.757495	1049.50044	-0.94267	-0.00049561	-2.7932	-0.0014685	-3.7358	-0.0019642	525.7557223442159	40.341	0.34306	40.111	39.93	40.273	-0.23021					13	8	2	0	0	0	0.027866	1	3437	3437		30.504	5.9844	1	73141			53939	17604	37665	37727	59107	59107					-0.022332709746024193
NKGAPLDLYF	10	Unmodified	_NKGAPLDLYF_					0	0	0			REV__ENSG00000161692|ENST00000315005|DBF4B	REV__ENSG00000161692|ENST00000315005|DBF4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.8258056640625	2	569.300581	1136.58661	0.13729	7.816E-05	-2.9667	-0.0016889	-2.8294	-0.0016108	569.2979823489757	74.321	1.2464	74.062	73.817	75.063	-0.25887					37	29	2	0	0	0	0.03519	1	9138	9138		47.657	13.485	1	448860	+		53940	25397	37666	37728	59108	59108					0.02378012131748619
NKGAYYDL	8	Unmodified	_NKGAYYDL_					0	0	0			REV__ENSG00000153820|ENST00000392056|SPHKAP	REV__ENSG00000153820|ENST00000392056|SPHKAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7537841796875	2	472.229625	942.444697	-0.21318	-0.00010067	-3.7198	-0.0017566	-3.933	-0.0018573	472.2277576945788	35.516	1.1356	35.516	35.093	36.229	0					64	30	3	0	0	0	0.027866	1	2786	2786		30.504	3.7075	1	1156700	+		53941	24912	37667	37729	59109	59109					-0.02882780890581671
NKGGRLRV	8	Unmodified	_NKGGRLRV_					0	0	0			REV__ENSG00000164099|ENST00000296498|PRSS12	REV__ENSG00000164099|ENST00000296498|PRSS12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2634582519531	2	450.280318	898.546083	-0.36726	-0.00016537	-1.5303	-0.00068905	-1.8975	-0.00085442	450.2804234552656	60.933	0.41303	61.005	60.79	61.203	0.071125					14	10	2	0	0	0	0.027866	1	6968	6968		47.916	27.434	1	145970	+		53942	25693	37668	37730	59110	59110					0.09275135322650385
NKGGVAVR	8	Unmodified	_NKGGVAVR_					0	0	0		nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.23052978515625	2	400.740494	799.466435	0.26637	0.00010675	0.089692	3.5943E-05	0.35606	0.00014269	400.74054413421834	22.522	0.47078	22.447	22.223	22.694	-0.075296					12	9	2	0	0	0	0.027866	1	766	766		12.959	4.1369	1	11510			53943	3915	37669	37731	59111	59111					0.05868068648658209
NKGKGIGFKP	10	Unmodified	_NKGKGIGFKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3098754882812	2	523.311284	1044.60801	-0.8344	-0.00043665	-2.9157	-0.0015258	-3.7501	-0.0019625	523.3095793867942	101.96	0.66343	101.96	101.55	102.21	0					21	14	2	0	0	0	0.03519	1	13090	13090		27.882	10.517	1	189480	+		53944	23785	37670	37732	59112	59112					0.0874944195113585
NKGKGIGFKP	10	Unmodified	_NKGKGIGFKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.311284	1044.60801	-0.29186	-0.00015274	-3.6576	-0.0019141	-3.9495	-0.0020668	523.3089093650112	101.93	0.68541	101.94	101.47	102.16	0.0073471	0.13464	-0.00024439	NaN	20.947	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153870	+		53945	23785	37670	37732							0.0874944195113585
NKGKGIGFKP	10	Unmodified	_NKGKGIGFKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.311284	1044.60801	0.18559	9.7119E-05	-3.8861	-0.0020336	-3.7005	-0.0019365	523.3089710457182	101.98	0.57173	101.97	101.67	102.24	-0.0054398	0.16878	-0.00048351	NaN	20.947	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182160	+		53946	23785	37670	37732							0.0874944195113585
NKGKGIGFKP	10	Unmodified	_NKGKGIGFKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.311284	1044.60801	0.20556	0.00010757	-3.5548	-0.0018603	-3.3493	-0.0017527	523.8108709597028	101.76	0.4063	101.63	101.45	101.86	-0.13156	-0.17425	-0.00013678	NaN	20.947	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50033	+		53947	23785	37670	37732							0.0874944195113585
NKGKGIGFKP	10	Unmodified	_NKGKGIGFKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.311284	1044.60801	0.34253	0.00017925	-4.0763	-0.0021332	-3.7338	-0.0019539	523.3095869849291	101.76	0.48682	101.64	101.37	101.86	-0.12626	-0.16366	-0.0006826	NaN	20.947	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36580	+		53948	23785	37670	37732							0.0874944195113585
NKGKGIGFKP	10	Unmodified	_NKGKGIGFKP_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.311284	1044.60801	0.27129	0.00014197	-4.3574	-0.0022803	-4.0861	-0.0021383	523.3095248811329	101.85	0.38042	101.68	101.47	101.85	-0.17178	-0.124	-0.00097676	NaN	20.947	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54232	+		53949	23785	37670	37732							0.0874944195113585
NKGKKHLL	8	Unmodified	_NKGKKHLL_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7667541503906	2	469.300719	936.586885	0.42873	0.0002012	-0.1118	-5.2469E-05	0.31693	0.00014873	469.30047524086984	36.92	0.62111	36.958	36.762	37.383	0.03804					23	15	2	0	0	0	0.027866	1	2893	2893		31.955	5.1588	1	197870	+		53950	22025	37671	37733	59113	59113					0.11605476642262147
NKGKKKKP	8	Unmodified	_NKGKKKKP_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2792663574219	2	464.308544	926.602535	0.033263	1.5444E-05	0.97589	0.00045311	1.0092	0.00046856	464.3094846486827	51.685	0.54878	51.685	51.323	51.871	0					24	15	2	0	0	0	0.027866	1	5527	5527		42.474	19.432	1	399030			53951	13650	37672	37734	59114	59114					0.1362976315931519
NKGKWAWIL	9	Unmodified	_NKGKWAWIL_					0	0	0			REV__ENST00000509538.5_1_4:185573199-185578558:+|nuORF	REV__ENST00000509538.5_1_4:185573199-185578558:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.292724609375	2	558.321651	1114.62875	0.072817	4.0655E-05	-4.34	-0.0024231	-4.2672	-0.0023824	558.3192107778937	76.518	0.46468	76.267	76.063	76.528	-0.25163					18	10	3	0	0	0	0.024436	1	9073	9073		30.504	4.9296	1	163600	+		53952	34086	37673	37735	59115	59115					0.07602032330783004
NKGLKICKP	9	Unmodified	_NKGLKICKP_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8213806152344	2	500.802237	999.589921	-0.89453	-0.00044798	-0.28513	-0.0001428	-1.1797	-0.00059078	500.8018005861808	39.361	0.67067	39.262	38.843	39.514	-0.098755					26	18	2	0	0	0	0.024506	1	3376	3376		30.504	0	1	241770	+		53953	23875	37674	37736	59116	59116					0.09010983704774844
NKGMLVVAK	9	Unmodified	_NKGMLVVAK_					0	0	0			REV__ENSG00000089157|ENST00000392514|RPLP0	REV__ENSG00000089157|ENST00000392514|RPLP0	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2822570800781	2	480.288963	958.563372	0.52631	0.00025278	-3.4934	-0.0016779	-2.9671	-0.0014251	480.28716656091433	46.57	0.6125	46.57	46.199	46.812	0					38	16	3	0	0	0	0.024477	1	4565	4565		35.618	0	1	1820700	+		53954	20843	37675	37737	59117	59117					0.08243294813439661
NKGPAVGIY	9	Unmodified	_NKGPAVGIY_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.750732421875	2	459.75581	917.497067	-0.69498	-0.00031952	0.36645	0.00016848	-0.32854	-0.00015105	459.755354398113	38.952	0.36731	38.976	38.768	39.135	0.023727					15	9	2	0	0	0	0.024443	1	3217	3217		19.36	0	1	311150			53955	7150	37676	37738	59118	59118					0.035018022430335805
NKGPIIDNQ	9	Unmodified	_NKGPIIDNQ_					0	0	0			REV__ENSG00000119906|ENST00000238961|SLF2	REV__ENSG00000119906|ENST00000238961|SLF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.9708557128906	2	499.766906	997.519259	1.3248	0.00066208	0.3166	0.00015822	1.6414	0.00082031	499.76673024947644	17.355	0.252	17.201	17.007	17.259	-0.15403					6	4	2	0	0	0	0.024523	1	169	169		29.15	10.825	1	8659.1	+		53956	22497	37677	37739	59119	59119					0.020399819207909786
NKGPMSSLS	9	Oxidation (M)	_NKGPM(Oxidation (M))SSLS_		NKGPM(1)SSLS		NKGPM(96)SSLS	0	0	1			REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.724853515625	2	468.726392	935.438231	0.56375	0.00026425	-4.2149	-0.0019756	-3.6512	-0.0017114	468.7243117304672	47.123	0.82122	46.97	46.55	47.371	-0.15301					59	21	4	0	0	0	0.16468	1	4679	4679		96.19	22.216	1	1710300	+		53957	35895	37678	37740	59120	59120		957			-0.032070421135813376
NKGPPTPALLV	11	Unmodified	_NKGPPTPALLV_					0	0	0			REV__ENSG00000142025|ENST00000269945|DMRTC2	REV__ENSG00000142025|ENST00000269945|DMRTC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8300170898438	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0344	1	11236	11236		29.17	1.2878	1	4870500	+		53958	24131	37679	37741	59121	59121					0.10094577919790026
NKGPPTPALLV	11	Unmodified	_NKGPPTPALLV_					0	0	0			REV__ENSG00000142025|ENST00000269945|DMRTC2	REV__ENSG00000142025|ENST00000269945|DMRTC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8298950195312	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.98542	1	11125	11125		40.058	7.2458	1	6921700	+		53959	24131	37679	37741	59122	59122					0.10094577919790026
NKGPSRIK	8	Unmodified	_NKGPSRIK_					0	0	0			REV__ENSG00000083635|ENST00000379161|NUFIP1	REV__ENSG00000083635|ENST00000379161|NUFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2743835449219	2	450.274701	898.534849	-0.17068	-7.6855E-05	-0.93719	-0.00042199	-1.1079	-0.00049885	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	1.0338	1	11685	11685		31.955	1.4512	1	67707000	+		53960	20718	37680	37742	59123	59123					0.08152313228515595
NKGPSRIK	8	Unmodified	_NKGPSRIK_					0	0	0			REV__ENSG00000083635|ENST00000379161|NUFIP1	REV__ENSG00000083635|ENST00000379161|NUFIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2743835449219	2	450.274701	898.534849	0.37578	0.0001692	-1.4515	-0.00065358	-1.0757	-0.00048437	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	1.043	1	11717	11717		30.504	0.6621	1	69580000	+		53961	20718	37680	37742	59124	59124					0.08152313228515595
NKGPSRIK	8	Unmodified	_NKGPSRIK_					0	0	0			REV__ENSG00000083635|ENST00000379161|NUFIP1	REV__ENSG00000083635|ENST00000379161|NUFIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2745361328125	2	450.274701	898.534849	-1.3767	-0.00061991	0.3574	0.00016093	-1.0193	-0.00045898	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0338	1	11428	11428		31.955	1.4512	1	56225000	+		53962	20718	37680	37742	59125	59125					0.08152313228515595
NKGPSRIK	8	Unmodified	_NKGPSRIK_					0	0	0			REV__ENSG00000083635|ENST00000379161|NUFIP1	REV__ENSG00000083635|ENST00000379161|NUFIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.27459716796875	2	450.274701	898.534849	0.10472	4.7152E-05	-1.1606	-0.00052261	-1.0559	-0.00047546	450.27420091803094	92.333	2.0403	92.192	91.748	93.788	-0.14131					175	47	6	0	0	0	1.0338	2	11391	11391;11415		31.955	5.2619	1	53243000	+		53963	20718	37680	37742	59126;59127	59126					0.08152313228515595
NKGRKEAII	9	Unmodified	_NKGRKEAII_					0	0	0			REV__ENSG00000127884|ENST00000368547|ECHS1	REV__ENSG00000127884|ENST00000368547|ECHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2906494140625	2	514.81419	1027.61383	0.84795	0.00043654	-3.6781	-0.0018935	-2.8302	-0.001457	515.312791543332	70.856	0.51057	70.563	70.329	70.84	-0.29291					22	11	3	0	0	0	0.024427	1	8512	8512		42.396	3.59	1	265430	+		53964	22951	37681	37743	59128	59128					0.1011254046279646
NKGRLHCDP	9	Unmodified	_NKGRLHCDP_					0	0	0		ENSG00000165752|ENST00000298630|STK32C;nc|ENSG00000165752|Q86UX6-2|STK32C	ENSG00000165752|ENST00000298630|STK32C	ENSG00000165752|ENST00000298630|STK32C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2499389648438	2	520.258725	1038.5029	-0.26635	-0.00013857	-0.39809	-0.00020711	-0.66444	-0.00034568	520.2585902051064	72.519	1.5003	72.242	71.51	73.01	-0.2769					53	35	2	0	0	0	0.024381	1	8405	8405		37.159	9.2769	1	105740			53965	7463	37682	37744	59129	59129					-0.014814225169629935
NKGRNSDWYTQ	11	Unmodified	_NKGRNSDWYTQ_					0	0	0			REV__ENSG00000173281|ENST00000310455|PPP1R3B	REV__ENSG00000173281|ENST00000310455|PPP1R3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.8633117675781	3	456.881219	1367.62183	-0.52445	-0.00023961	-3.6822	-0.0016823	-4.2067	-0.001922	457.2142014663757	38.253	0.094326	38.034	37.988	38.083	-0.21848					4	2	2	0	0	0	0.024726	1	3133	3133		20.315	4.9775	1	83946	+		53966	26762	37683	37745	59130	59130					-0.04727977078391632
NKGRRIAF	8	Unmodified	_NKGRRIAF_					0	0	0		ENST00000379297.5_1_X:23722013-23724857:-|nuORF;nc|ENSG00000123130|Q9Y305-3|ACOT9;nc|ENSG00000123130|Q9Y305-2|ACOT9;nc|ENSG00000123130|Q9Y305|ACOT9;ENSG00000123130|ENST00000379303|ACOT9	ENST00000379297.5_1_X:23722013-23724857:-|nuORF	ENST00000379297.5_1_X:23722013-23724857:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.74267578125	2	481.288143	960.561733	0.11094	5.3396E-05	-1.7919	-0.00086241	-1.6809	-0.00080901	481.2873132058048	45.646	0.71487	45.646	45.375	46.09	0					51	20	4	0	0	0	0.027866	1	4414	4414		20.482	0	1	1898600			53967	3959	37684	37746	59131	59131					0.07987421839686704
NKGTLEDQII	10	Unmodified	_NKGTLEDQII_					0	0	0		ENSG00000197616|ENST00000405093|MYH6;ENST00000557461.1_1_14:23869380-23876432:-|nuORF	ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.80712890625	2	565.806228	1129.5979	0.25355	0.00014346	0.66333	0.00037532	0.91688	0.00051878	565.8065729795808	32.833	0.8432	32.641	32.335	33.178	-0.19261					48	20	3	0	0	0	1.0616	1	2296	2296		37.812	1.3648	1	2499800			53968	10024	37685	37747	59132	59132					0.038287894352379226
NKHIIQNAL	9	Unmodified	_NKHIIQNAL_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2;CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2901611328125	2	525.806365	1049.59818	-0.75893	-0.00039905	-0.71201	-0.00037438	-1.4709	-0.00077343	525.8051249434205	33.458	0.29356	33.465	33.355	33.649	0.0066261					13	7	2	0	0	0	0.024506	1	2429	2429		30.504	15.639	1	43041			53969	18205	37686	37748	59133	59133					0.07536253945750104
NKHKRPGE	8	Unmodified	_NKHKRPGE_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6461181640625	2	483.267407	964.520262	-0.20602	-9.9564E-05	2.055	0.00099311	1.849	0.00089355	483.26833174671646	48.031	0.84121	47.933	47.52	48.362	-0.097553					29	22	2	0	0	0	0.027866	1	4766	4766		15.642	0	1	198640			53970	2428	37687	37749	59134	59134					0.036582410803816856
NKHLEDLIRK	10	Unmodified	_NKHLEDLIRK_					0	0	0		nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-2|CAGE1	nc|ENSG00000164304|Q8TC20-3|CAGE1	nc|ENSG00000164304|Q8TC20-3|CAGE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.58203125	3	422.582333	1264.72517	0.49638	0.00020976	-1.3479	-0.0005696	-0.85152	-0.00035984	422.58168788498597	95.965	2.872	95.828	94.982	97.854	-0.13689					198	65	4	0	0	0	1.1307	1	11931	11931		25.126	3.3456	1	769050			53971	7255	37688	37750	59135	59135					0.1033955510006308
NKHLYTID	8	Unmodified	_NKHLYTID_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29278564453125	2	502.263999	1002.51345	-0.30574	-0.00015356	1.178	0.00059164	0.87221	0.00043808	502.2637591182257	45.945	0.37412	45.684	45.593	45.968	-0.26118					11	9	2	0	0	0	0.027866	1	4387	4387		23.042	6.5693	1	120150			53972	9199	37689	37751	59136	59136					0.012288834091350509
NKHLYTID	8	Unmodified	_NKHLYTID_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.263999	1002.51345	-0.12556	-6.3064E-05	2.2774	0.0011438	2.1518	0.0010808	502.76708531777757	45.827	0.40834	45.827	45.613	46.021	0	0.061855	0.00020436	NaN	16.473	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225850			53973	9199	37689	37751							0.012288834091350509
NKHLYTID	8	Unmodified	_NKHLYTID_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.263999	1002.51345	-0.11872	-5.9629E-05	2.3775	0.0011941	2.2587	0.0011345	502.2643275108463	45.741	0.65271	45.785	45.614	46.267	0.043877	0.019433	0.00030489	NaN	16.473	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219460			53974	9199	37689	37751							0.012288834091350509
NKHSTKPE	8	Unmodified	_NKHSTKPE_					0	0	0		ENST00000508978.1_1_5:98115639-98134278:+|nuORF	ENST00000508978.1_1_5:98115639-98134278:+|nuORF	ENST00000508978.1_1_5:98115639-98134278:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7820739746094	2	470.745973	939.477394	-0.19857	-9.3475E-05	0.39244	0.00018474	0.19387	9.1266E-05	470.7461837906558	29.427	0.42128	29.43	29.129	29.551	0.0031357					17	10	2	0	0	0	0.027866	1	1797	1797		6.7355	0	1	70161			53975	15799	37690	37752	59137	59137					0.005234262322915129
NKHVKEVEQT	10	Unmodified	_NKHVKEVEQT_					0	0	0			REV__ENSG00000138640|ENST00000264344|FAM13A	REV__ENSG00000138640|ENST00000264344|FAM13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.92303466796875	3	404.55081	1210.6306	0.12877	5.2094E-05	1.1883	0.00048072	1.317	0.00053281	404.55117859888014	27.235	0.76536	26.993	26.744	27.509	-0.24217					41	17	3	0	0	0	0.03519	1	1466	1466		3.026	0	1	463770	+		53976	23872	37691	37753	59138	59138					0.03370996558101069
NKIAKETN	8	Unmodified	_NKIAKETN_					0	0	0		ENST00000589892.1_1_17:76212712-76219632:+|nuORF;nc|ENSG00000089685|O15392|BIRC5;ENSG00000089685|ENST00000350051|BIRC5;nc|ENSG00000089685|O15392-2|BIRC5	ENST00000589892.1_1_17:76212712-76219632:+|nuORF	ENST00000589892.1_1_17:76212712-76219632:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.734130859375	2	459.256174	916.497795	0.55168	0.00025336	-4.0354	-0.0018533	-3.4837	-0.0015999	459.2545914537256	69.401	0.92461	69.108	68.789	69.714	-0.29292					34	23	2	0	0	0	0.027866	1	8330	8330		31.53	5.9558	1	2219000			53977	1913	37692	37754	59139	59139					0.03620596892085359
NKIIANVVY	9	Unmodified	_NKIIANVVY_					0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7349243164062	2	517.305667	1032.59678	-0.62163	-0.00032157	-1.6594	-0.00085841	-2.281	-0.00118	517.3046415785047	43.617	0.42789	43.38	43.211	43.639	-0.23736					20	11	2	0	0	0	0.024436	1	4041	4041		23.042	0	1	553990	+		53978	29147	37693	37755	59140	59140					0.08178619856994374
NKIIFARK	8	Unmodified	_NKIIFARK_					0	0	0		ENST00000519354.1_1_17:15341092-15355857:-|nuORF;ENSG00000239704|ENST00000619038|CDRT4	ENST00000519354.1_1_17:15341092-15355857:-|nuORF	ENST00000519354.1_1_17:15341092-15355857:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.73919677734375	2	495.316369	988.618185	-0.29543	-0.00014633	-0.065385	-3.2386E-05	-0.36082	-0.00017872	495.31624250935926	53.602	0.38713	53.405	53.201	53.588	-0.19739					14	10	2	0	0	0	0.027866	1	5622	5622		17.365	0.89182	1	264120			53979	10762	37694	37756	59141	59141					0.12342049676362876
NKIIIACKV	9	Unmodified	_NKIIIACKV_					0	0	0			REV__ENST00000378654.8_1_13:48517402-48517489:-|nuORF	REV__ENST00000378654.8_1_13:48517402-48517489:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.75384521484375	2	501.312438	1000.61032	-0.42946	-0.00021529	-4.0215	-0.002016	-4.451	-0.0022313	501.8119209616236	30.708	0.42234	30.558	30.386	30.809	-0.14952					13	9	2	0	0	0	0.024506	1	1993	1993		23.042	3.6825	1	29742	+		53980	31414	37695	37757	59142	59142					0.11004154364582064
NKIKEKIRRLC	11	Unmodified	_NKIKEKIRRLC_					0	0	0		ENST00000489996.1_1_10:88226942-88232014:-|nuORF;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENST00000489996.1_1_10:88226942-88232014:-|nuORF	ENST00000489996.1_1_10:88226942-88232014:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.62353515625	3	467.622134	1399.84457	0.72772	0.0003403	2.9327	0.0013714	3.6604	0.0017117	467.62340330736504	107.11	0.60897	107.12	106.86	107.47	0.0018311					48	16	4	0	0	0	1.0723	1	13656	13656		18.966	3.6332	1	749420			53981	1252	37696	37758	59143	59143					0.16064425453123476
NKIKFDQSV	9	Unmodified	_NKIKFDQSV_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	nc|ENSG00000136758|Q96TA2|YME1L1;YME1L1|p.M567Ifs*16|1|0.18|ENSG00000136758|chr10:27119331-27119332|-/A|frameshift_variant	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7640380859375	2	539.798206	1077.58186	-0.48199	-0.00026018	-1.0171	-0.00054905	-1.4991	-0.00080923	539.7973504693028	49.974	0.4486	49.793	49.607	50.055	-0.18071					22	11	3	0	0	0	0.024418	1	5086	5086		37.812	4.9991	1	515100			53982	18305;38165	37697	37759	59144	59144					0.046171279889904326
NKIKKLTAK	9	Unmodified	_NKIKKLTAK_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2514038085938	2	522.350409	1042.68626	-0.27735	-0.00014487	-0.050944	-2.6611E-05	-0.32829	-0.00017148	522.3502852151295	35.015	0.3243	34.799	34.589	34.913	-0.21555					11	7	2	0	0	0	0.024541	1	2626	2626		12.812	9.1274	1	87350			53983	2816	37698	37760	59145	59145					0.16662874536359595
NKINNQYR	8	Unmodified	_NKINNQYR_					0	0	0			REV__ENSG00000198056|ENST00000338193|PRIM1	REV__ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2781982421875	2	525.277972	1048.54139	0.4845	0.0002545	1.8078	0.00094961	2.2923	0.0012041	525.2788853568715	87.165	2.1242	87.029	86.065	88.189	-0.13613					121	50	4	0	0	0	0.027866	1	10536	10536		31.955	0	1	7225900	+		53984	28380	37699	37761	59146	59146					0.01906206389230647
NKIPIILQP	9	Unmodified	_NKIPIILQP_					0	0	0			REV__ENST00000545186.1_1_6:163483196-163516415:+|nuORF	REV__ENST00000545186.1_1_6:163483196-163516415:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2616577148438	2	518.331685	1034.64882	-0.69861	-0.00036211	0.34305	0.00017781	-0.35556	-0.0001843	518.3317251014744	56.171	0.53348	55.955	55.745	56.278	-0.21551					23	13	2	0	0	0	0.024541	1	6071	6071		17.365	0	1	229730	+		53985	22008	37700	37762	59147	59147					0.1328778327076634
NKIQLPRPQ	9	Unmodified	_NKIQLPRPQ_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10;DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.27685546875	2	547.327465	1092.64038	-0.59507	-0.0003257	0.41818	0.00022888	-0.17689	-9.6819E-05	547.3275724915934	29.212	0.5593	29.039	28.766	29.325	-0.17258					34	12	4	0	0	0	0.024506	1	1759	1759		30.504	5.0535	1	632290			53986	4946	37701	37763	59148	59148					0.0977622935411091
NKIRKILDKT	10	Unmodified	_NKIRKILDKT_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.542724609375	3	410.262712	1227.76631	-0.79187	-0.00032487	1.2199	0.00050047	0.428	0.00017559	410.26320367958715	21.75	0.5299	21.538	21.315	21.845	-0.2128					23	10	4	0	0	0	0.03519	1	713	713		24.232	10.724	1	63341			53987	6713	37702	37764	59149	59149					0.16153316139548224
NKISPNKCI	9	Unmodified	_NKISPNKCI_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2820129394531	2	508.781502	1015.54845	1.6361	0.00083244	0.70587	0.00035913	2.342	0.0011916	508.78188196140076	23.455	2.3272	23.264	22.296	24.623	-0.19117					114	52	5	0	0	0	0.024021	1	966	966		79.451	5.196	1	25721000	+		53988	21850	37703	37765	59150	59150					0.04129802945431038
NKKAGQHL	8	Unmodified	_NKKAGQHL_					0	0	0			REV__ENST00000473758.5_1_14:23537472-23537793:-|nuORF	REV__ENST00000473758.5_1_14:23537472-23537793:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2586975097656	2	448.259051	894.503549	0.35148	0.00015756	-0.50826	-0.00022783	-0.15678	-7.0278E-05	448.2586890631354	89.096	1.4611	89.112	88.623	90.084	0.015907					87	34	4	0	0	0	0.97924	1	11183	11183		40.573	3.4135	1	7395300	+		53989	33251	37704	37766	59151	59151					0.05207740194430244
NKKANVVQT	9	Unmodified	_NKKANVVQT_					0	0	0			REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29168701171875	2	501.290548	1000.56654	-0.25386	-0.00012726	-0.032713	-1.6399E-05	-0.28657	-0.00014365	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.62163	1	10130	10130		51.335	6.9583	1	2648000	+		53990	36442	37705	37767	59152	59152					0.06628261191792717
NKKANVVQT	9	Unmodified	_NKKANVVQT_					0	0	0			REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	REV__nc|ENSG00000024862|Q8IWP9|CCDC28A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903747558594	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.67687	1	10526	10526		47.657	6.8792	1	10074000	+		53991	36442	37705	37767	59153	59153					0.06628261191792717
NKKATQHL	8	Unmodified	_NKKATQHL_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2726745605469	2	470.272158	938.529764	0.89577	0.00042125	-0.44054	-0.00020717	0.45523	0.00021408	470.2718642062893	91.209	1.3358	91.22	90.742	92.077	0.011276					80	31	4	0	0	0	0.98759	2	11447	11447;11498		39.253	8.7492	1	4377900	+		53992	26915	37706	37768	59154;59155	59154					0.05804009365908769
NKKATQHL	8	Unmodified	_NKKATQHL_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2723083496094	2	470.272158	938.529764	-0.28847	-0.00013566	0.3685	0.0001733	0.080029	3.7635E-05	470.2722458645397	91.332	2.0416	91.209	90.754	92.796	-0.12341					118	48	4	0	0	0	0.97794	1	11195	11195		40.778	1.972	1	5650700	+		53993	26915	37706	37768	59156	59156					0.05804009365908769
NKKDPRSL	8	Unmodified	_NKKDPRSL_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2784423828125	2	479.277441	956.540328	0.086785	4.1594E-05	3.2211	0.0015438	3.3078	0.0015854	479.2793231244921	81.002	2.3435	81.002	79.447	81.791	0					113	56	3	0	0	0	0.80469	1	10109	10109		58.782	7.4465	1	1529300			53994	9418	37707	37769	59157	59157					0.06031992020314192
NKKDPRSL	8	Unmodified	_NKKDPRSL_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.27764892578125	2	479.277441	956.540328	0.21198	0.0001016	0.12251	5.8716E-05	0.33449	0.00016032	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.95679	1	10389	10389		44.117	0	1	4888300			53995	9418	37707	37769	59158	59158					0.06031992020314192
NKKDPRSL	8	Unmodified	_NKKDPRSL_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.277099609375	2	479.277441	956.540328	0.51465	0.00024666	-0.27369	-0.00013117	0.24097	0.00011549	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.97794	1	10511	10511		40.778	1.972	1	4752300			53996	9418	37707	37769	59159	59159					0.06031992020314192
NKKDPRSL	8	Unmodified	_NKKDPRSL_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2779541015625	2	479.277441	956.540328	-0.71663	-0.00034346	3.8434	0.0018421	3.1268	0.0014986	479.2799764755381	80.941	2.5403	80.965	79.605	82.145	0.023911					119	61	4	0	0	0	0.93437	2	10004	10004;10045		47.657	1.6851	1	1543800			53997	9418	37707	37769	59160;59161	59160					0.06031992020314192
NKKDPRSL	8	Unmodified	_NKKDPRSL_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2775573730469	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.85395	4	10506	10344;10426;10438;10506		54.776	3.4409	1	4947400			53998	9418	37707	37769	59162;59163;59164;59165	59165					0.06031992020314192
NKKESDKLK	9	Unmodified	_NKKESDKLK_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.80003	1	11190	11190		39.253	1.4413	1	17400000	+		53999	36740	37708	37770	59166	59166					0.07820799534761136
NKKESLLFE	9	Unmodified	_NKKESLLFE_					0	0	0			REV__nc|ENSG00000156970|O60566-2|BUB1B	REV__nc|ENSG00000156970|O60566-2|BUB1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3055419921875	2	554.305864	1106.59717	-0.20895	-0.00011582	-0.30571	-0.00016946	-0.51466	-0.00028528	554.3055608748607	75.799	1.3209	75.541	75.2	76.521	-0.25865					89	32	5	0	0	0	0.56934	1	8990	8990		54.776	1.4249	1	4250500	+		54000	25103	37709	37771	59167	59167					0.04813994786195508
NKKFLGPA	8	Unmodified	_NKKFLGPA_					0	0	0		nc|ENSG00000159708|Q1X8D7-2|LRRC36;ENSG00000159708|ENST00000329956|LRRC36	nc|ENSG00000159708|Q1X8D7-2|LRRC36	nc|ENSG00000159708|Q1X8D7-2|LRRC36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.2738952636719	2	437.760895	873.507237	-0.20699	-9.0614E-05	1.4689	0.00064302	1.2619	0.0005524	437.7611671798954	42.699	0.71793	42.586	42.353	43.071	-0.11253					45	18	4	0	0	0	0.027866	1	3829	3829		33.516	0	1	317870			54001	6763	37710	37772	59168	59168					0.06542409968267293
NKKGRVTP	8	Unmodified	_NKKGRVTP_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.27398681640625	2	450.274701	898.534849	0.37578	0.0001692	-1.4515	-0.00065358	-1.0757	-0.00048437	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	0.845	1	11744	11744		55.504	6.0627	1	69580000			54002	3315	37711	37773	59169	59169					0.08152313228504227
NKKGRVTP	8	Unmodified	_NKKGRVTP_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2743225097656	2	450.274701	898.534849	-1.3767	-0.00061991	0.3574	0.00016093	-1.0193	-0.00045898	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	0.95679	1	11470	11470		44.117	6.9577	1	56225000			54003	3315	37711	37773	59170	59170					0.08152313228504227
NKKGRVTP	8	Unmodified	_NKKGRVTP_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.27447509765625	2	450.274701	898.534849	0.10472	4.7152E-05	-1.1606	-0.00052261	-1.0559	-0.00047546	450.27420091803094	92.333	2.0403	92.192	91.748	93.788	-0.14131					175	47	6	0	0	0	1.043	1	11377	11377		30.504	0	1	53243000			54004	3315	37711	37773	59171	59171					0.08152313228504227
NKKHIHSR	8	Unmodified	_NKKHIHSR_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.256591796875	2	510.296499	1018.57845	-1.6358	-0.00083475	0.65999	0.00033679	-0.97583	-0.00049796	510.2998929140126	37.931	0.43866	37.931	37.632	38.071	0					31	12	4	0	0	0	0.027866	1	3120	3120		30.504	0	1	231740			54005	10262	37712	37774	59172	59172					0.06989922725654196
NKKIFFLSL	9	Unmodified	_NKKIFFLSL_					0	0	0		nc|ENSG00000163312|Q8TDG4-2|HELQ;nc|ENSG00000163312|Q8TDG4-4|HELQ	nc|ENSG00000163312|Q8TDG4-2|HELQ	nc|ENSG00000163312|Q8TDG4-2|HELQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.3151245117188	2	555.33951	1108.66447	-0.036434	-2.0233E-05	-0.40305	-0.00022383	-0.43948	-0.00024406	555.3392764384843	67.683	0.37508	67.45	67.261	67.636	-0.23376					14	8	2	0	0	0	0.024487	1	7799	7799		17.365	0	1	112370			54006	18444	37713	37775	59173	59173					0.11448069787797976
NKKIGIFPP	9	Unmodified	_NKKIGIFPP_					0	0	0		ENSG00000154217|ENST00000581322|PITPNC1	ENSG00000154217|ENST00000581322|PITPNC1	ENSG00000154217|ENST00000581322|PITPNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2740173339844	2	507.310752	1012.60695	-0.57508	-0.00029175	0.69402	0.00035208	0.11894	6.034E-05	507.81356681919635	67.012	0.65393	67.012	66.672	67.326	0					41	15	4	0	0	0	0.024436	1	8005	8005		30.504	0	1	339030			54007	6391	37714	37776	59174	59174					0.10115227582230091
NKKKEIQN	8	Unmodified	_NKKKEIQN_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2904968261719	2	501.290548	1000.56654	-0.38963	-0.00019532	-0.25636	-0.00012851	-0.64599	-0.00032383	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	1.0106	1	10809	10809		35.618	1.4457	1	8504000			54008	4214	37715	37777	59175	59175					0.06628261191804086
NKKKENRA	8	Unmodified	_NKKKENRA_					0	0	0			REV__ENST00000524137.5_3_8:102792174-102801096:-|nuORF	REV__ENST00000524137.5_3_8:102792174-102801096:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3054504394531	2	494.28834	986.562127	-0.77227	-0.00038172	4.2345	0.002093	3.4622	0.0017113	494.29045819596917	85.553	0.66125	85.579	85.285	85.946	0.025536					32	15	3	0	0	0	0.027866	1	10622	10622		42.396	0	1	399240	+		54009	34371	37716	37778	59176	59176					0.06830796768895198
NKKKKAGT	8	Unmodified	_NKKKKAGT_					0	0	0			REV__NMT1|p.K59N|1|0.16|ENSG00000136448|chr17:45081689-45081689|G/C|missense_variant	REV__NMT1|p.K59N|1|0.16|ENSG00000136448|chr17:45081689-45081689|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.93389892578125	2	437.777077	873.5396	0.023492	1.0284E-05	-3.2086	-0.0014047	-3.1851	-0.0013944	437.7756798223928	20.771	0.38914	20.603	20.395	20.784	-0.16774					14	7	3	0	0	0	0.027866	1	569	569		11.511	0	1	47169	+		54010	37288	37717	37779	59177	59177					0.0977719737127245
NKKKKGAKCV	10	Unmodified	_NKKKKGAKCV_					0	0	0			REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7799072265625	2	552.339518	1102.66448	-0.88259	-0.00048749	-3.6059	-0.0019917	-4.4885	-0.0024792	552.83817385456	45.563	0.36699	45.411	45.211	45.578	-0.15156					18	10	2	0	0	0	0.03519	1	4388	4388		21.96	1.013	1	192020	+		54011	20893	37718	37780	59178	59178					0.11725746516140134
NKKKKKKKA	9	Unmodified	_NKKKKKKKA_					0	0	0			REV__ENST00000510078.5_1_3:129112488-129115182:-|nuORF	REV__ENST00000510078.5_1_3:129112488-129115182:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.814208984375	2	550.88495	1099.75535	-2.1325	-0.0011747	1.661	0.00091501	-0.47147	-0.00025973	550.8861011061256	38.287	0.13478	38.314	38.23	38.365	0.027275					6	3	2	0	0	0	0.024541	1	3142	3142		1.0954	0	1	69460	+		54012	34097	37719	37781	59179	59179					0.20945958555921607
NKKKKNNI	8	Unmodified	_NKKKKNNI_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7825012207031	2	493.808908	985.603263	-0.20442	-0.00010094	3.8674	0.0019098	3.663	0.0018088	493.81067733319827	46.66	0.62027	46.711	46.441	47.061	0.051395					41	16	3	0	0	0	0.027866	1	4555	4555		50.025	2.1089	1	946240			54013	2049	37720	37782	59180	59180					0.10988557808377664
NKKKNTKN	8	Unmodified	_NKKKNTKN_					0	0	0			REV__ENST00000327111.7_1_5:92929661-92929820:+|nuORF	REV__ENST00000327111.7_1_5:92929661-92929820:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7911071777344	2	487.790715	973.566878	-0.9621	-0.0004693	0.73582	0.00035893	-0.22627	-0.00011037	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.93274	1	10421	10421		47.916	0	1	1891000	+		54014	30413	37721	37783	59181	59181					0.0790368091164737
NKKKQYKD	8	Unmodified	_NKKKQYKD_					0	0	0		CASK|p.K703N|1|0.1|ENSG00000147044|chrX:41542737-41542737|C/G|missense_variant	CASK|p.K703N|1|0.1|ENSG00000147044|chrX:41542737-41542737|C/G|missense_variant	CASK|p.K703N|1|0.1|ENSG00000147044|chrX:41542737-41542737|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.29833984375	2	526.298373	1050.58219	-0.40732	-0.00021437	0.061287	3.2255E-05	-0.34603	-0.00018212	526.2983503107251	55.167	1.0364	55.017	54.711	55.747	-0.15036					77	28	4	0	0	0	0.56592	1	6076	6076		79.451	7.5735	1	9588200			54015	218	37722	37784	59182	59182					0.058925477088678235
NKKKVLFVL	9	Unmodified	_NKKKVLFVL_					0	0	0			REV__ENST00000379561.5_1_13:41132958-41133663:-|nuORF	REV__ENST00000379561.5_1_13:41132958-41133663:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.8004150390625	2	544.863152	1087.71175	-0.98529	-0.00053685	3.196	0.0017414	2.2107	0.0012045	544.8650671458594	45.149	0.21375	45.05	44.906	45.12	-0.099449					7	5	2	0	0	0	0.024541	1	4270	4270		12.207	0	1	49108	+		54016	31436	37723	37785	59183	59183					0.1714034905880908
NKKKWDGK	8	Unmodified	_NKKKWDGK_					0	0	0			REV__ENSG00000111961|ENST00000367467|SASH1	REV__ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7375793457031	2	502.287808	1002.56106	-0.14502	-7.284E-05	-1.5351	-0.00077105	-1.6801	-0.00084389	502.288615697106	35.757	0.54451	35.559	35.366	35.91	-0.19829					23	15	2	0	0	0	0.027866	1	2777	2777		12.207	3.9756	1	263200	+		54017	21959	37724	37786	59184	59184					0.05988582399993447
NKKLIIIN	8	Unmodified	_NKKLIIIN_					0	0	0			REV__ENST00000354752.5_1_9:99940663-99942342:-|nuORF	REV__ENST00000354752.5_1_9:99940663-99942342:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.27703857421875	2	478.318577	954.622602	0.081727	3.9091E-05	-0.80856	-0.00038675	-0.72683	-0.00034766	478.3181998603701	75.13	0.3922	75.14	74.934	75.326	0.010376					15	9	2	0	0	0	0.027866	1	9108	9108		44.531	11.015	1	55770	+		54018	30760	37725	37787	59185	59185					0.14347514099267755
NKKLILDFV	9	Unmodified	_NKKLILDFV_					0	0	0		nc|ENSG00000140993|Q6NT04-2|TIGD7;ENSG00000140993|ENST00000396862|TIGD7	nc|ENSG00000140993|Q6NT04-2|TIGD7	nc|ENSG00000140993|Q6NT04-2|TIGD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3168334960938	2	545.336967	1088.65938	-0.33924	-0.000185	-0.1096	-5.9766E-05	-0.44883	-0.00024477	545.3363931797277	89.265	1.0571	89.127	88.649	89.706	-0.13761					39	24	2	0	0	0	0.024427	1	10836	10836		42.396	4.5846	1	177780			54019	5460	37726	37788	59186	59186					0.11859765925169086
NKKLLGALL	9	Unmodified	_NKKLLGALL_					0	0	0			REV__AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	REV__AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7714538574219	2	485.326402	968.638252	0.36322	0.00017628	-0.7386	-0.00035846	-0.37538	-0.00018218	485.32600695309134	75.67	0.8545	75.494	75.234	76.088	-0.17548					30	21	2	0	0	0	0.024541	1	9027	9027		6.7355	0	1	97376	+		54020	19100	37727	37789	59187	59187					0.15267800616322802
NKKLLMADV	9	Unmodified	_NKKLLMADV_					0	0	0			REV__ENST00000372969.7_1_1:39494463-39494520:+|nuORF	REV__ENST00000372969.7_1_1:39494463-39494520:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.299072265625	2	516.299527	1030.5845	0.90362	0.00046654	1.5588	0.0008048	2.4624	0.0012713	516.3018012861867	58.911	0.61386	58.724	58.462	59.076	-0.18705					19	16	2	0	0	0	0.024539	1	6644	6644		27.882	0	1	208670	+		54021	31225	37728	37790	59188	59188					0.07043260122304673
NKKLLSVL	8	Unmodified	_NKKLLSVL_					0	0	0			REV__ENSG00000198755|ENST00000322203|RPL10A	REV__ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.8057556152344	2	457.805303	913.596052	0.18851	8.63E-05	-0.014962	-6.8497E-06	0.17355	7.945E-05	457.8051643966276	69.264	0.89714	69.264	68.977	69.874	0					49	22	3	0	0	0	0.71833	1	8342	8342		65.803	2.4969	1	2145400	+		54022	28465	37729	37791	59189	59189					0.1357982520794394
NKKLSLSFFII	11	Unmodified	_NKKLSLSFFII_					0	0	0			REV__ENST00000592348.1_1_17:67532232-67537891:+|nuORF	REV__ENST00000592348.1_1_17:67532232-67537891:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.2735290527344	3	437.267463	1308.78056	-0.04804	-2.1006E-05	1.1154	0.00048773	1.0674	0.00046673	437.2678994958615	52.092	1.3009	52.184	51.823	53.123	0.091942					95	33	4	0	0	0	0.024759	1	5616	5616		17.833	4.8757	1	1195200	+		54023	35744	37730	37792	59190	59190					0.1385196856786024
NKKLYFAF	8	Unmodified	_NKKLYFAF_					0	0	0			REV__ENSG00000166233|ENST00000379887|ARIH1	REV__ENSG00000166233|ENST00000379887|ARIH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.78369140625	2	515.789653	1029.56475	-1.4807	-0.00076373	-2.3415	-0.0012077	-3.8222	-0.0019715	515.7886267506829	29.24	0.45501	29.24	29.032	29.487	0					17	11	2	0	0	0	0.027866	1	1796	1796		44.531	8.9128	1	73993	+		54024	25993	37731	37793	59191	59191					0.051152521738458745
NKKNRFKSIS	10	Unmodified	_NKKNRFKSIS_					0	0	0		FAM133A|p.T53Nfs*8|1|0.5|ENSG00000179083|chrX:93709569-93709570|-/A|frameshift_variant	FAM133A|p.T53Nfs*8|1|0.5|ENSG00000179083|chrX:93709569-93709570|-/A|frameshift_variant	FAM133A|p.T53Nfs*8|1|0.5|ENSG00000179083|chrX:93709569-93709570|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3560180664062	2	611.356754	1220.69895	0.14541	8.89E-05	-1.0358	-0.00063326	-0.89041	-0.00054436	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.1266	1	11589	11589		29.17	1.0886	1	13233000			54025	17631	37732	37794	59192	59192					0.09743285928607293
NKKNRFKSIS	10	Unmodified	_NKKNRFKSIS_					0	0	0		FAM133A|p.T53Nfs*8|1|0.5|ENSG00000179083|chrX:93709569-93709570|-/A|frameshift_variant	FAM133A|p.T53Nfs*8|1|0.5|ENSG00000179083|chrX:93709569-93709570|-/A|frameshift_variant	FAM133A|p.T53Nfs*8|1|0.5|ENSG00000179083|chrX:93709569-93709570|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3554077148438	2	611.356754	1220.69895	-0.19635	-0.00012004	-1.1472	-0.00070135	-1.3436	-0.00082139	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.0508	1	11246	11246		39.253	1.4413	1	5237500			54026	17631	37732	37794	59193	59193					0.09743285928607293
NKKPKSSAGI	10	Unmodified	_NKKPKSSAGI_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3076171875	2	515.306198	1028.59784	0.88113	0.00045405	-2.4319	-0.0012532	-1.5508	-0.00079913	515.3047557853234	20.461	0.49359	20.265	20.04	20.533	-0.19577					21	9	3	0	0	0	0.80817	1	539	539		60.118	8.7828	1	229180			54027	2577	37733	37795	59194	59194					0.08468834225891442
NKKPKSSAGI	10	Unmodified	_NKKPKSSAGI_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.306884765625	2	515.306198	1028.59784	-0.088534	-4.5622E-05	-1.2261	-0.00063182	-1.3146	-0.00067744	515.3053217783173	20.51	0.34739	20.287	20.117	20.464	-0.22344					18	6	4	0	0	0	0.80817	1	533	533		60.118	1.3363	1	221470			54028	2577	37733	37795	59195	59195					0.08468834225891442
NKKPSKPSSF	10	Unmodified	_NKKPSKPSSF_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.2984619140625	2	560.31148	1118.60841	-0.71677	-0.00040162	0.501	0.00028071	-0.21578	-0.0001209	560.3115264305055	38.623	0.39655	38.402	38.221	38.617	-0.22149					23	9	3	0	0	0	0.03519	1	3186	3186		34.173	6.2903	1	423440	+		54029	28456	37734	37796	59196	59196					0.053848168803369845
NKKQRRNF	8	Unmodified	_NKKQRRNF_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3168334960938	2	545.815056	1089.61556	-0.57609	-0.00031444	2.7449	0.0014982	2.1688	0.0011838	545.8172632607623	91.518	0.64005	91.395	91.076	91.716	-0.12341					42	14	4	0	0	0	0.027866	1	11227	11227		30.504	0	1	640260	+		54030	21436	37735	37797	59197	59197					0.07433594271424226
NKKREMDD	8	Unmodified	_NKKREMDD_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2713012695312	2	518.248023	1034.48149	-1.3153	-0.00068167	1.591	0.00082451	0.27562	0.00014284	518.2484079186316	28.539	0.86722	28.294	27.842	28.709	-0.24524					33	20	3	0	0	0	0.027866	1	1673	1673		20.947	0	1	112460			54031	2558	37736	37798	59198	59198					-0.03436852336312768
NKKREMDD	8	Unmodified	_NKKREMDD_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.248023	1034.48149	-1.3348	-0.00069173	0.99095	0.00051356	-0.34381	-0.00017818	518.2482880800949	28.664	2.1207	28.664	27.653	29.773	0	0.23368	0.00042642	NaN	20.947	78	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179560			54032	2558	37736	37798							-0.03436852336312768
NKKREMDD	8	Unmodified	_NKKREMDD_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.248023	1034.48149	-0.62187	-0.00032228	0.16679	8.6439E-05	-0.45508	-0.00023585	518.2480000947957	28.717	1.8751	28.713	27.545	29.42	-0.0042	0.28264	-0.00042781	NaN	20.947	67	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139710			54033	2558	37736	37798							-0.03436852336312768
NKKREMDD	8	Unmodified	_NKKREMDD_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.248023	1034.48149	-0.66775	-0.00034606	0.064513	3.3434E-05	-0.60324	-0.00031263	518.2479620257047	28.35	2.0605	28.431	27.392	29.452	0.080811	2.8248E-05	-0.00053382	NaN	20.947	73	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185510			54034	2558	37736	37798							-0.03436852336312768
NKKRKFQAN	9	Unmodified	_NKKRKFQAN_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|157|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|157|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|157|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3303833007812	2	567.330539	1132.64652	-1.643	-0.00093215	0.013669	7.7548E-06	-1.6294	-0.00092439	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.94809	1	11747	11747		29.15	1.0681	1	14057000			54035	17873	37737	37799	59199	59199					0.0855074758567298
NKKRKFQAN	9	Unmodified	_NKKRKFQAN_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|157|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|157|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|157|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3302001953125	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	0.96322	1	11704	11704		27.882	3.3631	1	13648000			54036	17873	37737	37799	59200	59200					0.0855074758567298
NKKRLKSQ	8	Unmodified	_NKKRLKSQ_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2861633300781	2	501.314358	1000.61416	-0.43906	-0.00022011	2.013	0.0010091	1.5739	0.00078903	501.31527489180763	63.142	0.44138	62.903	62.654	63.096	-0.23926					15	10	2	0	0	0	0.027866	1	7332	7332		27.882	8.7787	1	133280			54037	3761	37738	37800	59201	59201					0.11387960182651113
NKKRLKTE	8	Unmodified	_NKKRLKTE_					0	0	0		ENST00000524540.1_1_11:57439712-57439835:+|nuORF	ENST00000524540.1_1_11:57439712-57439835:+|nuORF	ENST00000524540.1_1_11:57439712-57439835:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7817687988281	2	508.81419	1015.61383	-1.1501	-0.00058517	2.7551	0.0014018	1.6051	0.00081667	508.8154783225305	43.744	0.4389	43.744	43.548	43.987	0					29	11	3	0	0	0	0.027866	1	4151	4151		27.882	8.7787	1	448960			54038	16063	37739	37801	59202	59202					0.10664540462801142
NKKRPIQLWSQ	11	Unmodified	_NKKRPIQLWSQ_					0	0	0			REV__ENSG00000137707|ENST00000692032|BTG4	REV__ENSG00000137707|ENST00000692032|BTG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.6080627441406	3	466.605249	1396.79392	1.1632	0.00054277	4.2687	0.0019918	5.4319	0.0025345	466.6070891322418	97.746	1.1433	97.623	96.706	97.849	-0.12368					48	25	3	0	0	0	1.0621	1	12090	12090		21.78	6.4429	1	244850	+		54039	23775	37740	37802	59203	59203					0.11139219399797184
NKKRPIQLWSQ	11	Unmodified	_NKKRPIQLWSQ_					0	0	0			REV__ENSG00000137707|ENST00000692032|BTG4	REV__ENSG00000137707|ENST00000692032|BTG4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	466.605249	1396.79392	-0.31368	-0.00014637	6.3712	0.0029728	6.0575	0.0028265	466.6081733543235	97.806	1.0658	97.641	96.768	97.834	-0.16521	0.0091649	0.0009266	NaN	21.78	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227560	+		54040	23775	37740	37802							0.11139219399797184
NKKRPSLD	8	Unmodified	_NKKRPSLD_					0	0	0		ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.277587890625	2	479.277441	956.540328	-0.16077	-7.7054E-05	-0.17359	-8.3198E-05	-0.33436	-0.00016025	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	0.94517	1	9753	9753		45.952	5.1738	1	2028900			54041	10466	37741	37803	59204	59204					0.06031992020314192
NKKSEQAS	8	Unmodified	_NKKSEQAS_					0	0	0			REV__HLA-DRA|p.W24Kfs*5|1|0.16|ENSG00000204287|chr6:32440016-32440025|ATCATGGGCT/-|frameshift_variant	REV__HLA-DRA|p.W24Kfs*5|1|0.16|ENSG00000204287|chr6:32440016-32440025|ATCATGGGCT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	446.2317199707031	2	446.230156	890.445759	0.46896	0.00020926	3.2722	0.0014601	3.7411	0.0016694	446.23162918375465	101.61	1.585	101.48	100.95	102.53	-0.13156					112	36	5	0	0	0	0.89627	1	12615	12615		51.335	3.6781	1	5166600	+		54042	36131	37742	37804	59205	59205					-0.0038456652166587446
NKKSIILCS	9	Unmodified	_NKKSIILCS_					0	0	0			REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.29046630859375	2	503.291702	1004.56885	-0.41393	-0.00020833	-3.1224	-0.0015715	-3.5363	-0.0017798	503.2899852120812	54.843	1.1883	54.697	54.208	55.396	-0.14609					64	27	3	0	0	0	0.42604	2	5856	5856;5869		64.207	19.83	1	3259200	+		54043	37802	37743	37805	59206;59207	59206					0.06674973605265677
NKKSIILCS	9	Unmodified	_NKKSIILCS_					0	0	0			REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.2909240722656	2	503.291702	1004.56885	-0.18909	-9.5166E-05	-3.3784	-0.0017003	-3.5675	-0.0017955	503.2898113512134	54.945	0.89883	54.714	54.423	55.322	-0.23087					72	25	4	0	0	0	0.2508	2	5868	5868;5881		82.241	34.325	1	3382300	+		54044	37802	37743	37805	59208;59209	59208					0.06674973605265677
NKKSIILCS	9	Unmodified	_NKKSIILCS_					0	0	0			REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.2908630371094	2	503.291702	1004.56885	0.26602	0.00013388	-3.8604	-0.0019429	-3.5944	-0.001809	503.2895616993081	54.9	0.98984	54.694	54.431	55.421	-0.20613					73	27	4	0	0	0	0.31037	2	5838	5838;5856		74.255	17.534	1	3867100	+		54045	37802	37743	37805	59210;59211	59210					0.06674973605265677
NKKSIILCS	9	Unmodified	_NKKSIILCS_					0	0	0			REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	503.291702	1004.56885	-0.41393	-0.00020833	-3.1224	-0.0015715	-3.5363	-0.0017798	503.2899852120812	54.843	1.1883	54.697	54.208	55.396	-0.14609	-0.0046116	0.00034405	NaN	82.241	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3259200	+		54046	37802	37743	37805							0.06674973605265677
NKKSIILCS	9	Unmodified	_NKKSIILCS_					0	0	0			REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	503.291702	1004.56885	-0.18909	-9.5166E-05	-3.3784	-0.0017003	-3.5675	-0.0017955	503.2898113512134	54.945	0.89883	54.714	54.423	55.322	-0.23087	0.01223	8.6348E-05	NaN	82.241	72	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3382300	+		54047	37802	37743	37805							0.06674973605265677
NKKSIILCS	9	Unmodified	_NKKSIILCS_					0	0	0			REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	REV__ZNF248|p.G152C|1|0.33|ENSG00000198105|chr10:37832901-37832901|C/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	503.291702	1004.56885	0.26602	0.00013388	-3.8604	-0.0019429	-3.5944	-0.001809	503.2895616993081	54.9	0.98984	54.694	54.431	55.421	-0.20613	-0.0076187	-0.00039884	NaN	82.241	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3867100	+		54048	37802	37743	37805							0.06674973605265677
NKKSKKQTG	9	Unmodified	_NKKSKKQTG_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8036804199219	2	509.803823	1017.59309	0.28678	0.0001462	-0.54644	-0.00027858	-0.25966	-0.00013238	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.85329	1	10311	10311		35.618	1.4457	1	3746700			54049	18056	37744	37806	59212	59212					0.08499950083137264
NKKSKKQTG	9	Unmodified	_NKKSKKQTG_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8039245605469	2	509.803823	1017.59309	0.56391	0.00028748	-0.9228	-0.00047045	-0.35889	-0.00018296	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.77768	1	10456	10456		40.778	9.2484	1	3699900			54050	18056	37744	37806	59213	59213					0.08499950083137264
NKKSKKQTG	9	Unmodified	_NKKSKKQTG_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.80352783203125	2	509.803823	1017.59309	0.28849	0.00014708	-0.65649	-0.00033468	-0.368	-0.00018761	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.85329	1	10435	10435		35.618	1.4457	1	3441300			54051	18056	37744	37806	59214	59214					0.08499950083137264
NKKSSSHW	8	Unmodified	_NKKSSSHW_					0	0	0			REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7435607910156	2	487.246141	972.477728	-0.10485	-5.109E-05	1.1657	0.00056797	1.0608	0.00051688	487.2462232743309	29.056	0.84395	28.906	28.657	29.501	-0.14952					33	19	4	0	0	0	0.027866	1	1795	1795		55.504	17.693	1	334090	+		54052	30488	37745	37807	59215	59215					-0.009611540478545066
NKKSSSHW	8	Unmodified	_NKKSSSHW_					0	0	0			REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.743896484375	2	487.246141	972.477728	0.12005	5.8495E-05	-0.86604	-0.00042197	-0.74599	-0.00036348	487.24554490665537	30.342	0.92807	30.192	29.501	30.429	-0.14952					33	21	3	0	0	0	0.027866	1	1811	1811		38.806	4.6336	1	271520	+		54053	30488	37745	37807	59216	59216					-0.009611540478545066
NKKTKPKSD	9	Unmodified	_NKKTKPKSD_					0	0	0		ENSG00000163602|ENST00000477973|RYBP;nc|ENSG00000163602|Q8N488|RYBP	ENSG00000163602|ENST00000477973|RYBP	ENSG00000163602|ENST00000477973|RYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3032836914062	2	523.303655	1044.59276	0.12304	6.4388E-05	-0.40431	-0.00021158	-0.28127	-0.00014719	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	0.6238	1	10459	10459		51.193	8.7966	1	3963900			54054	7112	37746	37808	59217	59217					0.07224530363282611
NKKTKPKSD	9	Unmodified	_NKKTKPKSD_					0	0	0		ENSG00000163602|ENST00000477973|RYBP;nc|ENSG00000163602|Q8N488|RYBP	ENSG00000163602|ENST00000477973|RYBP	ENSG00000163602|ENST00000477973|RYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3036499023438	2	523.303655	1044.59276	-0.39587	-0.00020716	-0.06527	-3.4156E-05	-0.46114	-0.00024131	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.86013	1	10508	10508		35.152	1.6364	1	14072000			54055	7112	37746	37808	59218	59218					0.07224530363282611
NKKTKPKSD	9	Unmodified	_NKKTKPKSD_					0	0	0		ENSG00000163602|ENST00000477973|RYBP;nc|ENSG00000163602|Q8N488|RYBP	ENSG00000163602|ENST00000477973|RYBP	ENSG00000163602|ENST00000477973|RYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3031005859375	2	523.303655	1044.59276	-0.28114	-0.00014712	0.21503	0.00011253	-0.066114	-3.4598E-05	523.3036290350911	89.646	0.60334	89.518	89.242	89.846	-0.12774					45	13	4	0	0	0	0.82115	1	10968	10968		37.812	7.3079	1	897320			54056	7112	37746	37808	59219	59219					0.07224530363282611
NKKTKPKSD	9	Unmodified	_NKKTKPKSD_					0	0	0		ENSG00000163602|ENST00000477973|RYBP;nc|ENSG00000163602|Q8N488|RYBP	ENSG00000163602|ENST00000477973|RYBP	ENSG00000163602|ENST00000477973|RYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.70156	2	10489	10489;10668		45.972	5.1599	1	14210000			54057	7112	37746	37808	59220;59221	59220					0.07224530363282611
NKKTKPKSD	9	Unmodified	_NKKTKPKSD_					0	0	0		ENSG00000163602|ENST00000477973|RYBP;nc|ENSG00000163602|Q8N488|RYBP	ENSG00000163602|ENST00000477973|RYBP	ENSG00000163602|ENST00000477973|RYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3038940429688	2	523.303655	1044.59276	0.35068	0.00018351	-0.25796	-0.00013499	0.092721	4.8521E-05	523.3033589717056	90.251	1.1125	90.113	89.792	90.904	-0.13824					76	26	4	0	0	0	0.70156	1	11031	11031		45.972	0.020292	1	1624800			54058	7112	37746	37808	59222	59222					0.07224530363282611
NKKTQAVVN	9	Unmodified	_NKKTQAVVN_					0	0	0		PKD1L1|p.E111K|1|0.2|ENSG00000158683|chr7:47936913-47936913|C/T|missense_variant	PKD1L1|p.E111K|1|0.2|ENSG00000158683|chr7:47936913-47936913|C/T|missense_variant	PKD1L1|p.E111K|1|0.2|ENSG00000158683|chr7:47936913-47936913|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29071044921875	2	501.290548	1000.56654	0.79479	0.00039842	-1.5169	-0.00076043	-0.72216	-0.00036201	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.77768	1	10749	10749		40.778	5.1599	1	8460100			54059	18968	37747	37809	59223	59223					0.06628261191792717
NKKTQAVVN	9	Unmodified	_NKKTQAVVN_					0	0	0		PKD1L1|p.E111K|1|0.2|ENSG00000158683|chr7:47936913-47936913|C/T|missense_variant	PKD1L1|p.E111K|1|0.2|ENSG00000158683|chr7:47936913-47936913|C/T|missense_variant	PKD1L1|p.E111K|1|0.2|ENSG00000158683|chr7:47936913-47936913|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903137207031	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.89441	1	10302	10302		32.812	0.85756	1	10074000			54060	18968	37747	37809	59224	59224					0.06628261191792717
NKKTSVPN	8	Unmodified	_NKKTSVPN_					0	0	0			REV__SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|53|1|anti-sense	REV__SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|53|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.25341796875	2	444.250892	886.48723	-0.18754	-8.3317E-05	-4.4466	-0.0019754	-4.6342	-0.0020587	444.24844663675236	45.357	0.36136	45.146	44.988	45.349	-0.21109					19	10	2	0	0	0	0.027866	1	4287	4287		49.442	0	1	587300	+		54061	37652	37748	37810	59225	59225					0.03944614237661881
NKKVAKASAA	10	Unmodified	_NKKVAKASAA_					0	0	0		ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP;ENST00000492885.1_1_9:125898316-125898746:-|nuORF	ENSG00000165209|ENST00000348403|STRBP	ENSG00000165209|ENST00000348403|STRBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.30035400390625	2	494.300916	986.587279	0.89614	0.00044296	-1.5866	-0.00078426	-0.69047	-0.0003413	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	1.0719	1	12319	12319		36.447	0.82846	1	45891000			54062	7382	37749	37811	59226	59226					0.09344851571461277
NKKVGTKITV	10	Unmodified	_NKKVGTKITV_					0	0	0			REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.34716796875	2	544.345323	1086.67609	-0.19367	-0.00010542	3.7533	0.0020431	3.5596	0.0019377	544.3472627637021	78.747	1.3535	78.492	78.127	79.48	-0.25471					71	31	4	0	0	0	1.0002	1	9397	9397		45.972	0.020292	1	3048000	+		54063	26120	37750	37812	59227	59227					0.13622266811103145
NKKVKGALR	9	Unmodified	_NKKVKGALR_					0	0	0		OR6X1|p.E294K|1|0.46|ENSG00000221931|chr11:123753639-123753639|C/T|missense_variant	OR6X1|p.E294K|1|0.46|ENSG00000221931|chr11:123753639-123753639|C/T|missense_variant	OR6X1|p.E294K|1|0.46|ENSG00000221931|chr11:123753639-123753639|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.79833984375	2	507.33255	1012.65055	-0.052625	-2.6698E-05	0.25963	0.00013172	0.20701	0.00010502	507.3326589498218	20.388	0.24334	20.165	19.973	20.216	-0.22344					6	4	2	0	0	0	0.024457	1	509	509		29.15	7.1897	1	10950			54064	18926	37751	37813	59228	59228					0.14472837079370038
NKKVKGESLS	10	Unmodified	_NKKVKGESLS_					0	0	0			REV__nc|ENSG00000140632|Q49A26-4|GLYR1	REV__nc|ENSG00000140632|Q49A26-4|GLYR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	545.316763	1088.61897	-0.35128	-0.00019156	0.14645	7.9859E-05	-0.20484	-0.0001117	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.0719	1	10633	10633		36.447	3.6343	1	4936700	+		54065	24034	37752	37814	59229	59229					0.07820799534783873
NKKVKGESLS	10	Unmodified	_NKKVKGESLS_					0	0	0			REV__nc|ENSG00000140632|Q49A26-4|GLYR1	REV__nc|ENSG00000140632|Q49A26-4|GLYR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3163452148438	2	545.316763	1088.61897	0.29621	0.00016153	-0.54145	-0.00029526	-0.24524	-0.00013373	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.0508	1	10485	10485		39.253	2.8061	1	4888900	+		54066	24034	37752	37814	59230	59230					0.07820799534783873
NKKVKGESLS	10	Unmodified	_NKKVKGESLS_					0	0	0			REV__nc|ENSG00000140632|Q49A26-4|GLYR1	REV__nc|ENSG00000140632|Q49A26-4|GLYR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3167114257812	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0393	1	11262	11262		40.778	7.9657	1	17400000	+		54067	24034	37752	37814	59231	59231					0.07820799534783873
NKKVPKATV	9	Unmodified	_NKKVPKATV_					0	0	0			REV__ENST00000467473.5_1_17:19551570-19555957:+|nuORF	REV__ENST00000467473.5_1_17:19551570-19555957:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7249755859375	2	492.813659	983.612765	0.62769	0.00030933	-0.054023	-2.6623E-05	0.57367	0.00028271	492.813229544	72.333	0.61613	72.052	71.769	72.385	-0.28124					43	15	4	0	0	0	0.024405	1	8741	8741		35.618	0	1	314330	+		54068	20467	37753	37815	59232	59232					0.12030326093895383
NKKVRWSIF	9	Unmodified	_NKKVRWSIF_					0	0	0			REV__ENSG00000174640|ENST00000310926|SLCO2A1	REV__ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.345658	1176.67676	-1.9349	-0.0011403	-2.8307	-0.0016682	-4.7655	-0.0028085	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	0.85329	1	11509	11509		35.618	0.46626	1	15816000	+		54069	26883	37754	37816	59233	59233					0.09549106250847217
NKKWIIQV	8	Unmodified	_NKKWIIQV_					0	0	0		ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7740478515625	2	514.816202	1027.61785	-0.1879	-9.6732E-05	-0.48865	-0.00025157	-0.67655	-0.0003483	514.8156956229418	69.18	0.78725	68.958	68.645	69.432	-0.22245					28	18	2	0	0	0	0.027866	1	7975	7975		31.955	0	1	382370			54070	6842	37755	37817	59234	59234					0.10514629956514909
NKKYKPLS	8	Unmodified	_NKKYKPLS_					0	0	0			REV__nc|ENSG00000241484|P85298-3|ARHGAP8	REV__nc|ENSG00000241484|P85298-3|ARHGAP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27728271484375	2	489.292559	976.570566	0.42405	0.00020749	-0.88532	-0.00043318	-0.46127	-0.00022569	489.29186825070167	64.305	0.51986	64.305	64.097	64.617	0					21	13	2	0	0	0	0.027866	1	7604	7604		38.806	1.647	1	251810	+		54071	37157	37756	37818	59235	59235					0.0813435068552053
NKKYTTINN	9	Unmodified	_NKKYTTINN_					0	0	0			REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3274536132812	2	548.293288	1094.57202	-0.92476	-0.00050704	-1.8436	-0.0010108	-2.7684	-0.0015179	548.7954501243843	57.216	0.37832	57.312	57.051	57.429	0.095306					18	9	3	0	0	0	0.024323	1	6361	6361		44.117	6.3053	1	111180	+		54072	21434	37757	37819	59236	59236					0.028519399836113735
NKKYTTINN	9	Unmodified	_NKKYTTINN_					0	0	0			REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	REV__ENST00000469032.1_1_8:91072403-91072958:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.293288	1094.57202	-0.69645	-0.00038186	3.4348	0.0018833	2.7383	0.0015014	548.2966254336545	57.741	0.12215	57.564	57.473	57.596	-0.17775	0.12605	0.0002459	NaN	44.117	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46242	+		54073	21434	37757	37819							0.028519399836113735
NKLAAKLGL	9	Unmodified	_NKLAAKLGL_					0	0	0		DBX1|p.K212N|1|0.24|ENSG00000109851|chr11:20157073-20157073|C/G|missense_variant	DBX1|p.K212N|1|0.24|ENSG00000109851|chr11:20157073-20157073|C/G|missense_variant	DBX1|p.K212N|1|0.24|ENSG00000109851|chr11:20157073-20157073|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7688293457031	2	464.302927	926.591301	0.66135	0.00030707	-0.48984	-0.00022743	0.17152	7.9636E-05	464.3026802585142	67.283	1.0119	67.307	66.812	67.824	0.023911					48	24	3	0	0	0	0.024506	1	7886	7886		23.042	0	1	371550			54074	623	37758	37820	59237	59237					0.125069410651804
NKLALMTE	8	Unmodified	_NKLALMTE_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.2221374511719	2	460.249503	918.484453	-0.052897	-2.4346E-05	-0.10878	-5.0067E-05	-0.16168	-7.4412E-05	460.24933811351633	42.946	0.82742	42.833	42.281	43.109	-0.11253					44	21	3	0	0	0	0.027866	1	3883	3883		12.207	0	1	1103500	+		54075	24520	37759	37821	59238	59238					0.021950227885099594
NKLFCVAE	8	Unmodified	_NKLFCVAE_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.25067138671875	2	462.236396	922.458238	-0.10501	-4.8541E-05	1.7912	0.00082796	1.6862	0.00077942	462.2380237586357	30.496	0.12704	30.347	30.259	30.386	-0.14952					4	2	2	0	0	0	0.027866	1	1933	1933		57.811	20.652	1	20574			54076	1752	37760	37822	59239	59239					-0.0060924638298729406
NKLFSLLPTT	10	Unmodified	_NKLFSLLPTT_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3297729492188	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.1088	1	11321	11321		31.53	2.3598	1	4298500	+		54077	22809	37761	37823	59240	59240					0.08819158199935373
NKLFSLLPTT	10	Unmodified	_NKLFSLLPTT_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	0.98754	3	11320	11320;11394;11501		47.657	4.7931	1	19210000	+		54078	22809	37761	37823	59241;59242;59243	59241					0.08819158199935373
NKLFSLLPTT	10	Unmodified	_NKLFSLLPTT_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3295288085938	2	567.331882	1132.64921	0.053871	3.0563E-05	-3.2004	-0.0018157	-3.1465	-0.0017851	567.3299406004519	88.124	1.3605	87.986	87.038	88.398	-0.13744					93	32	4	0	0	0	1.0002	1	10730	10730		45.972	13.16	1	1828400	+		54079	22809	37761	37823	59244	59244					0.08819158199935373
NKLGKEVL	8	Unmodified	_NKLGKEVL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2388610839844	2	450.779285	899.544017	-0.17092	-7.7048E-05	-0.47278	-0.00021312	-0.6437	-0.00029016	450.7787987387165	23.877	0.38571	23.877	23.694	24.08	0					13	8	2	0	0	0	0.027866	1	989	989		23.042	3.6825	1	45758			54080	10600	37762	37824	59245	59245					0.09022661794188025
NKLGKWTR	8	Unmodified	_NKLGKWTR_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.79718017578125	2	501.795801	1001.57705	-0.76192	-0.00038233	3.6313	0.0018222	2.8694	0.0014399	501.79745023381787	38.561	0.75866	38.561	38.247	39.006	0					48	19	4	0	0	0	1.043	1	3244	3244		30.504	6.3009	1	5240500			54081	7447	37763	37825	59246	59246					0.07632288636887097
NKLIATAL	8	Unmodified	_NKLIATAL_					0	0	0			REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.7820129394531	2	422.268553	842.522553	2.3623	0.00099754	-3.6635	-0.001547	-1.3012	-0.00054944	422.2668512094848	24.634	0.48203	24.453	24.285	24.767	-0.18089					24	10	4	0	0	0	0.027866	1	1068	1068		57.811	9.8957	1	505280	+		54082	24378	37764	37826	59247	59247					0.09499276765461673
NKLIATAL	8	Unmodified	_NKLIATAL_					0	0	0			REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	422.268553	842.522553	-0.17575	-7.4214E-05	-0.58823	-0.00024839	-0.76398	-0.00032261	422.26813171097143	24.786	0.43195	24.571	24.377	24.809	-0.2151	0.098957	0.0010001	NaN	57.811	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	616160	+		54083	24378	37764	37826							0.09499276765461673
NKLIATAL	8	Unmodified	_NKLIATAL_					0	0	0			REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	REV__ENST00000480957.6_2_3:49456386-49456881:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.268553	842.522553	-0.022188	-9.3691E-06	-1.7191	-0.00072594	-1.7413	-0.00073531	422.2675304048755	24.566	0.47383	24.391	24.169	24.643	-0.17484	-0.080406	4.4999E-05	NaN	57.811	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	564830	+		54084	24378	37764	37826							0.09499276765461673
NKLIDEPIYED	11	Unmodified	_NKLIDEPIYED_					0	0	0			REV__ENSG00000172172|ENST00000306185|MRPL13	REV__ENSG00000172172|ENST00000306185|MRPL13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2817077636719	3	450.22588	1347.65581	0.26463	0.00011914	-2.1118	-0.00095081	-1.8472	-0.00083166	450.2245372710605	50.879	0.36719	50.879	50.775	51.143	0					12	9	2	0	0	0	0.024779	1	5395	5395		21.78	4.6137	1	145250	+		54085	26642	37765	37827	59248	59248					-0.00410993430000417
NKLIDVIDQ	9	Unmodified	_NKLIDVIDQ_					0	0	0			REV__ENSG00000111110|ENST00000228705|PPM1H	REV__ENSG00000111110|ENST00000228705|PPM1H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2980346679688	2	529.298039	1056.58152	0.1048	5.5473E-05	-0.73635	-0.00038975	-0.63155	-0.00033428	529.2974682186262	106.31	0.71573	106.31	106.01	106.72	0					55	26	4	0	0	0	0.87448	1	13650	13650		34.173	0	1	603100	+		54086	21894	37766	37828	59249	59249					0.0554970826913177
NKLIESDLN	9	Unmodified	_NKLIESDLN_					0	0	0		ENSG00000077157|ENST00000608999|PPP1R12B;nc|ENSG00000077157|O60237-6|PPP1R12B;nc|ENSG00000077157|O60237-2|PPP1R12B;nc|ENSG00000077157|O60237-5|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.818359375	2	523.279846	1044.54514	0.5111	0.00026745	4.0129	0.0020999	4.524	0.0023673	523.7839706330928	54.101	0.35256	54.199	54.041	54.393	0.098015					12	9	2	0	0	0	0.022832	1	5827	5827		71.877	0	1	440120			54087	1602	37767	37829	59250	59250					0.02464831372435583
NKLIITLG	8	Unmodified	_NKLIITLG_					0	0	0			REV__ENST00000236147.4_1_1:169677884-169677929:-|nuORF	REV__ENST00000236147.4_1_1:169677884-169677929:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2735595703125	2	436.284203	870.553853	-0.023057	-1.0059E-05	0.17951	7.8318E-05	0.15645	6.8258E-05	436.28416289259644	53.101	1.0096	53.101	52.789	53.799	0					56	27	3	0	0	0	0.027866	1	5716	5716		63.306	9.9548	1	1882700	+		54088	29431	37768	37830	59251	59251					0.11339849799571766
NKLKDVVSI	9	Unmodified	_NKLKDVVSI_					0	0	0			REV__ENST00000381501.7_1_4:48172303-48172339:-|nuORF	REV__ENST00000381501.7_1_4:48172303-48172339:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.305908203125	2	508.310949	1014.60735	-0.5089	-0.00025868	3.2648	0.0016595	2.7559	0.0014008	508.31229136729917	91.585	1.2651	91.462	91.035	92.3	-0.12341					39	29	2	0	0	0	0.024427	1	11284	11284		9.1829	0	1	124080	+		54089	31521	37769	37831	59252	59252					0.10062602511413843
NKLKEGKLS	9	Unmodified	_NKLKEGKLS_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8088684082031	2	508.808574	1015.60259	0.97898	0.00049812	-0.94033	-0.00047845	0.038657	1.9669E-05	508.80797002454494	18.082	0.54136	17.925	17.755	18.297	-0.15637					25	10	3	0	0	0	0.45795	1	264	264		62.107	0	1	266430	+		54090	23878	37770	37832	59253	59253					0.09541718368666352
NKLKEGKLS	9	Unmodified	_NKLKEGKLS_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	508.808574	1015.60259	0.97898	0.00049812	-0.94033	-0.00047845	0.038657	1.9669E-05	508.80797002454494	18.082	0.54136	17.925	17.755	18.297	-0.15637	0.019067	2.18E-05	NaN	62.107	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266430	+		54091	23878	37770	37832							0.09541718368666352
NKLKEGKLS	9	Unmodified	_NKLKEGKLS_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.808574	1015.60259	-0.16021	-8.1518E-05	-1.0627	-0.00054071	-1.2229	-0.00062223	508.8081218162945	18.094	0.19797	17.887	17.764	17.962	-0.20669	-0.019067	-0.00010272	NaN	62.107	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14980	+		54092	23878	37770	37832							0.09541718368666352
NKLKKKIL	8	Unmodified	_NKLKKKIL_					0	0	0			REV__ENSG00000165490|ENST00000533655|DDIAS	REV__ENSG00000165490|ENST00000533655|DDIAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7808532714844	2	492.850045	983.685536	-0.51995	-0.00025626	-4.2314	-0.0020854	-4.7513	-0.0023417	492.8469675387499	78.07	0.16673	78.086	77.948	78.114	0.015907					5	3	2	0	0	0	0.027866	1	9580	9580		26.796	6.3143	1	66033	+		54093	25892	37771	37833	59254	59254					0.1930407988730849
NKLKLALI	8	Unmodified	_NKLKLALI_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ALDH1L2|p.G638Afs*16|1|0.08|ENSG00000136010|chr12:105040645-105040645|C/-|frameshift_variant;ENSG00000136010|ENST00000258494|ALDH1L2;ENST00000552427.1_1_12:105464346-105478214:-|nuORF;nc|ENSG00000136010|Q3SY69-2|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.8879089355469	2	456.81567	911.616788	-0.67709	-0.00030931	-1.7347	-0.00079242	-2.4118	-0.0011017	456.816126310747	38.12	0.1657	37.902	37.792	37.957	-0.21849					7	4	2	0	0	0	0.027866	1	3089	3089		21.702	10.191	1	101640			54094	61	37772	37834	59255	59255					0.1574441558758508
NKLKWINRRRR	11	Unmodified	_NKLKWINRRRR_					0	0	0			REV__ENST00000476474.5_1_19:12098553-12146369:+|nuORF	REV__ENST00000476474.5_1_19:12098553-12146369:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.9850463867188	3	513.986687	1538.93823	-0.20812	-0.00010697	-0.87216	-0.00044828	-1.0803	-0.00055525	513.9860258521965	17.387	0.44993	17.18	17.014	17.464	-0.20669					14	8	3	0	0	0	1.1077	1	175	175		9.2118	3.2108	1	72154	+		54095	31929	37773	37835	59256	59256					0.19031905670408378
NKLKWINRRRR	11	Unmodified	_NKLKWINRRRR_					0	0	0			REV__ENST00000476474.5_1_19:12098553-12146369:+|nuORF	REV__ENST00000476474.5_1_19:12098553-12146369:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	513.986687	1538.93823	1.243	0.0006389	-2.4811	-0.0012753	-1.2381	-0.00063638	513.9853161069443	17.385	0.49959	17.231	17.057	17.557	-0.15403	0.029034	0.00043183	NaN	9.2118	20	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81830	+		54096	31929	37773	37835							0.19031905670408378
NKLKWINRRRR	11	Unmodified	_NKLKWINRRRR_					0	0	0			REV__ENST00000476474.5_1_19:12098553-12146369:+|nuORF	REV__ENST00000476474.5_1_19:12098553-12146369:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	513.986687	1538.93823	-0.20812	-0.00010697	-0.87216	-0.00044828	-1.0803	-0.00055525	513.9860258521965	17.387	0.44993	17.18	17.014	17.464	-0.20669	-0.022401	0.0029128	NaN	9.2118	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72154	+		54097	31929	37773	37835							0.19031905670408378
NKLLDEDY	8	Unmodified	_NKLLDEDY_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2969055175781	2	505.245472	1008.47639	2.1079	0.001065	3.5441	0.0017907	5.652	0.0028557	505.2469930882739	19.688	0.82552	19.754	19.438	20.264	0.066195					26	16	2	0	0	0	0.027866	1	372	372		19.36	0	1	18018	+		54098	21499	37774	37836	59257	59257					-0.02750832927290503
NKLLFDKH	8	Unmodified	_NKLLFDKH_					0	0	0			REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2723083496094	2	507.790184	1013.56581	-1.0078	-0.00051173	0.94901	0.0004819	-0.058758	-2.9837E-05	507.78920779157534	35.525	0.72021	35.525	35.343	36.063	0					32	18	3	0	0	0	0.027866	1	2798	2798		38.806	13.356	1	492270	+		54099	29876	37775	37837	59258	59258					0.05957466542747625
NKLLFDKH	8	Unmodified	_NKLLFDKH_					0	0	0			REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.790184	1013.56581	-1.1288	-0.00057318	-2.1004	-0.0010665	-3.2291	-0.0016397	507.788532573578	35.377	0.42368	35.355	35.085	35.509	-0.021763	-0.03583	-0.0029217	NaN	38.806	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468120	+		54100	29876	37775	37837							0.05957466542747625
NKLLFDKH	8	Unmodified	_NKLLFDKH_					0	0	0			REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.790184	1013.56581	-0.47745	-0.00024244	-3.037	-0.0015422	-3.5145	-0.0017846	507.7879242066086	35.444	0.50201	35.488	35.156	35.658	0.04406	0.09639	-0.0038729	NaN	38.806	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378530	+		54101	29876	37775	37837							0.05957466542747625
NKLLFDKH	8	Unmodified	_NKLLFDKH_					0	0	0			REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.790184	1013.56581	-0.48468	-0.00024612	1.5694	0.00079694	1.0847	0.00055082	507.79100435621746	35.57	0.77957	35.355	35.062	35.841	-0.21555	-0.036379	0.00080526	NaN	38.806	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483880	+		54102	29876	37775	37837							0.05957466542747625
NKLLFDKH	8	Unmodified	_NKLLFDKH_					0	0	0			REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.790184	1013.56581	-0.51445	-0.00026123	1.1605	0.00058928	0.64603	0.00032805	507.7902908883615	35.568	0.61793	35.356	35	35.618	-0.21246	-0.035214	0.00038994	NaN	38.806	45	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540550	+		54103	29876	37775	37837							0.05957466542747625
NKLLFDKH	8	Unmodified	_NKLLFDKH_					0	0	0			REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	REV__ENST00000280557.10_1_12:123252139-123253391:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.790184	1013.56581	-0.61311	-0.00031133	1.0302	0.00052313	0.4171	0.0002118	507.7904681453928	35.455	0.53083	35.268	35.023	35.554	-0.18675	-0.12274	0.00025764	NaN	38.806	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504070	+		54104	29876	37775	37837							0.05957466542747625
NKLLILCVGA	10	Unmodified	_NKLLILCVGA_					0	0	0		ENSG00000197849|ENST00000641972|OR8G1	ENSG00000197849|ENST00000641972|OR8G1	ENSG00000197849|ENST00000641972|OR8G1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3179931640625	2	522.31772	1042.62089	0.40752	0.00021286	3.1184	0.0016288	3.5259	0.0018416	522.3192809961478	18.523	0.39636	18.319	18.113	18.51	-0.20371					12	7	2	0	0	0	0.03519	1	285	285		24.203	4.206	1	82175			54105	10054	37776	37838	59259	59259					0.10128137019023598
NKLLLMFGM	9	Unmodified	_NKLLLMFGM_					0	0	0		ENSG00000121318|ENST00000240619|TAS2R10	ENSG00000121318|ENST00000240619|TAS2R10	ENSG00000121318|ENST00000240619|TAS2R10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2431640625	2	533.793023	1065.57149	-0.51572	-0.00027529	-0.45701	-0.00024395	-0.97274	-0.00051924	533.7926729371584	56.388	0.79124	56.232	55.856	56.648	-0.15656					41	19	3	0	0	0	0.024466	1	6095	6095		25.45	1.9275	1	1273100			54106	3865	37777	37839	59260	59260					0.04133105738560516
NKLLNEAR	8	Unmodified	_NKLLNEAR_					0	0	0			REV__nc|ENSG00000117650|P51955-2|NEK2	REV__nc|ENSG00000117650|P51955-2|NEK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.277587890625	2	479.277441	956.540328	-0.16077	-7.7054E-05	-0.17359	-8.3198E-05	-0.33436	-0.00016025	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	1.0106	1	9716	9716		35.618	0	1	2028900	+		54107	22368	37778	37840	59261	59261					0.06031992020314192
NKLLVVAKP	9	Unmodified	_NKLLVVAKP_					0	0	0			REV__ENST00000489671.5_2_3:141820662-141868333:-|nuORF	REV__ENST00000489671.5_2_3:141820662-141868333:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2873840332031	2	491.326402	980.638252	0.15439	7.5857E-05	-0.079585	-3.9102E-05	0.074807	3.6755E-05	491.3263018844334	68.148	0.34587	67.859	67.671	68.017	-0.28834					14	8	2	0	0	0	0.024477	1	8107	8107		20.947	6.0821	1	94679	+		54108	33680	37779	37841	59262	59262					0.1471580061631812
NKLLYYQCPYF	11	Unmodified	_NKLLYYQCPYF_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31292724609375	3	484.572446	1450.69551	0.14891	7.2157E-05	2.1676	0.0010504	2.3165	0.0011225	484.573285753813	40.086	0.74485	40.086	39.771	40.516	0					57	20	4	0	0	0	0.024782	1	3477	3477		14.086	0	1	1119400	+		54109	24824	37780	37842	59263	59263					-0.011811449602646462
NKLLYYQCPYF	11	Unmodified	_NKLLYYQCPYF_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	3	484.572446	1450.69551	-1.0215	-0.00049499	3.3622	0.0016292	2.3407	0.0011342	484.5739781003867	40.396	0.57425	40.419	40.088	40.663	0.023003					42	15	4	0	0	0	0.024792	1	3472	3472		18.531	0	1	1261700	+		54110	24824	37780	37842	59264	59264					-0.011811449602646462
NKLNGLWFAE	10	Unmodified	_NKLNGLWFAE_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.7922973632812	2	596.31148	1190.60841	-1.2112	-0.00072223	1.0628	0.00063374	-0.14839	-8.8487E-05	596.3119940498415	66.375	0.50412	66.155	65.867	66.371	-0.22013					24	12	3	0	0	0	0.03519	1	7592	7592		47.657	7.5992	1	256880	+		54111	36747	37781	37843	59265	59265					0.02072816880308892
NKLQPKRTADA	11	Unmodified	_NKLQPKRTADA_					0	0	0		ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3490600585938	2	621.351668	1240.68878	0.49653	0.00030852	-3.4244	-0.0021277	-2.9279	-0.0018192	621.3493597922452	102.98	0.43923	102.85	102.63	103.07	-0.12724					26	10	3	0	0	0	1.0371	1	12787	12787		19.104	0.84144	1	1207500			54112	1993	37782	37844	59266	59266					0.07806678203382944
NKLRLEIP	8	Unmodified	_NKLRLEIP_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2899475097656	2	491.805834	981.597115	-0.97543	-0.00047972	0.058301	2.8673E-05	-0.91713	-0.00045105	491.80559111060444	44.855	0.99068	44.706	44.322	45.312	-0.1488					67	28	4	0	0	0	0.027866	1	4305	4305		57.811	11.839	1	1177400			54113	9819	37783	37845	59267	59267					0.10558039576824285
NKLRRNRMSL	10	Unmodified	_NKLRRNRMSL_					0	0	0			REV__ENST00000296786.7_1_5:158712588-158712648:+|nuORF	REV__ENST00000296786.7_1_5:158712588-158712648:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7362060546875	3	429.919062	1286.73536	-0.69997	-0.00030093	-1.6877	-0.00072556	-2.3876	-0.0010265	430.2531754213063	39.96	0.33963	39.848	39.677	40.016	-0.11223					13	8	2	0	0	0	0.03519	1	3482	3482		31.634	15.627	1	101920	+		54114	30002	37784	37846	59268	59268					0.10345839553656333
NKLRVRSRKFP	11	Unmodified	_NKLRVRSRKFP_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.6238708496094	3	467.624755	1399.85244	0.3269	0.00015287	-2.4651	-0.0011527	-2.1382	-0.00099988	467.6235691549318	106.94	0.72211	106.94	106.72	107.44	-0.003479					44	23	4	0	0	0	1.0764	1	13682	13682		17.833	2.5	1	488480			54115	653	37785	37847	59269	59269					0.16850320764910975
NKLSGLAE	8	Unmodified	_NKLSGLAE_					0	0	0			REV__ENST00000470046.1_1_22:50881704-50882673:+|nuORF	REV__ENST00000470046.1_1_22:50881704-50882673:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.22137451171875	2	416.232168	830.449782	2.2977	0.00095638	-4.0847	-0.0017002	-1.787	-0.00074382	416.23186510411523	24.369	0.21549	24.188	24.114	24.329	-0.18089					6	4	2	0	0	0	0.027866	1	1038	1038		23.042	0	1	12590	+		54116	33144	37786	37848	59270	59270					0.027775229720305106
NKLSYILSN	9	Unmodified	_NKLSYILSN_					0	0	0			REV__nc|ENSG00000284723|Q8NH09|OR8S1	REV__nc|ENSG00000284723|Q8NH09|OR8S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3150024414062	2	526.292756	1050.57096	-0.88121	-0.00046377	2.8286	0.0014887	1.9474	0.0010249	526.2939948792858	69.495	0.37552	69.228	68.912	69.287	-0.26725					9	8	2	0	0	0	0.024527	1	8016	8016		31.53	5.9558	1	100920	+		54117	37210	37787	37849	59271	59271					0.04769725614710296
NKLTTPSLSL	10	Unmodified	_NKLTTPSLSL_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.3132934570312	2	537.313689	1072.61282	-1.5063	-0.00080937	0.5718	0.00030723	-0.93452	-0.00050213	537.3136880434678	62.74	0.98287	62.501	62.293	63.276	-0.23926					52	26	3	0	0	0	0.54901	1	7280	7280		82.75	13.904	1	1613300	+		54118	36753	37788	37850	59272	59272					0.07942281303257914
NKLVCLGHPAN	11	Unmodified	_NKLVCLGHPAN_					0	0	0			REV__ENST00000484048.1_1_3:23848730-23849168:+|nuORF	REV__ENST00000484048.1_1_3:23848730-23849168:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.28564453125	2	583.310958	1164.60736	-0.93381	-0.0005447	-1.4805	-0.00086357	-2.4143	-0.0014083	583.3106768971172	55.319	0.40992	55.173	54.948	55.358	-0.14609					19	11	3	0	0	0	0.024762	1	5933	5933		45.972	25.975	1	400550	+		54119	33528	37789	37851	59273	59273					0.03164279239786083
NKLVGLLQAE	10	Unmodified	_NKLVGLLQAE_					0	0	0			REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.8218383789062	2	542.821681	1083.62881	0.057095	3.0993E-05	-0.10425	-5.6586E-05	-0.04715	-2.5594E-05	542.8215890100759	68.019	0.56427	67.786	67.555	68.119	-0.23376					39	13	3	0	0	0	0.47897	1	7849	7849		90.601	6.9538	1	2213900	+		54120	36949	37790	37852	59274	59274					0.09033987540146882
NKLVGTPN	8	Unmodified	_NKLVGTPN_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.7688293457031	2	421.74016	841.465767	0.61529	0.00025949	0.075512	3.1846E-05	0.6908	0.00029134	421.73985752211746	58.481	0.52191	58.572	58.297	58.819	0.091217					24	13	3	0	0	0	0.027866	1	6552	6552		10.265	0	1	305530			54121	6577	37791	37853	59275	59275					0.03869229208942215
NKLVLSLLS	9	Unmodified	_NKLVLSLLS_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.78173828125	2	493.815867	985.617182	-0.20294	-0.00010021	0.12506	6.1759E-05	-0.077874	-3.8455E-05	493.8157599468497	66.198	0.29917	66.228	65.968	66.267	0.030098					12	7	2	0	0	0	0.024506	1	7766	7766		30.504	0	1	365150			54122	127;9786	37792	37854	59276	59276					0.12379790516808953
NKLVMLFSV	9	Unmodified	_NKLVMLFSV_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7659912109375	2	525.804445	1049.59434	0.3038	0.00015974	2.288	0.001203	2.5918	0.0013628	525.8053831787779	33.527	0.3821	33.584	33.35	33.732	0.056572					13	9	2	0	0	0	0.024381	1	2347	2347		29.15	0	1	43859			54123	18302	37793	37855	59277	59277					0.07152448127681055
NKLVPVSVV	9	Unmodified	_NKLVPVSVV_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.8033447265625	2	477.80276	953.590967	0.65893	0.00031484	-0.41855	-0.00019998	0.24039	0.00011486	477.8023414310917	52.491	0.73483	52.344	51.985	52.72	-0.14723					48	18	4	0	0	0	0.75397	1	5615	5615		42.396	3.59	1	1850800			54124	5251	37794	37856	59278	59278					0.11231521345325746
NKMFNPSKQ	9	Unmodified	_NKMFNPSKQ_					0	0	0		ENST00000394718.4_1_14:64935809-64935965:+|nuORF	ENST00000394718.4_1_14:64935809-64935965:+|nuORF	ENST00000394718.4_1_14:64935809-64935965:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3240966796875	2	547.276583	1092.53861	-0.22745	-0.00012448	-1.312	-0.00071804	-1.5395	-0.00084251	547.2747410218676	75.107	0.33104	74.844	74.57	74.901	-0.26326					9	7	2	0	0	0	0.024447	1	8881	8881		32.812	0	1	59671			54125	13496	37795	37857	59279	59279					-0.003953850599373254
NKMLTEIAR	9	Unmodified	_NKMLTEIAR_					0	0	0			REV__S100A14|p.I26M|1|0.31|ENSG00000189334|chr1:153615334-153615334|G/C|missense_variant	REV__S100A14|p.I26M|1|0.31|ENSG00000189334|chr1:153615334-153615334|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.305419921875	2	538.300059	1074.58556	-0.36696	-0.00019753	0.64025	0.00034465	0.2733	0.00014711	538.8022311172516	68.525	0.18109	68.544	68.391	68.573	0.018921					6	4	2	0	0	0	0.024367	1	8130	8130		29.17	0	1	420850	+		54126	37456	37796	37858	59280	59280					0.051254744912057504
NKNFLLLPL	9	Unmodified	_NKNFLLLPL_					0	0	0			REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF	REV__ENST00000593532.5_1_19:50885885-50886227:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3353271484375	2	536.331685	1070.64882	3.0195	0.0016195	3.7194	0.0019949	6.739	0.0036143	536.3335844259909	18.125	0.59756	17.882	17.627	18.224	-0.24256					28	11	4	0	0	0	0.97516	1	251	251		25.45	1.2474	1	297840	+		54127	35766	37797	37859	59281	59281					0.11631783270763663
NKNGKPKR	8	Unmodified	_NKNGKPKR_					0	0	0			REV__ENSG00000134545|ENST00000359151|KLRC1	REV__ENSG00000134545|ENST00000359151|KLRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.3030700683594	2	471.2856	940.556647	0.65076	0.00030669	2.2132	0.001043	2.8639	0.0013497	471.28637096290976	67.455	0.81693	67.479	67.23	68.047	0.023911					29	20	2	0	0	0	0.027866	1	7977	7977		31.955	0	1	291810	+		54128	23461	37798	37860	59282	59282					0.0839911797708055
NKNGSWGPKTK	11	Unmodified	_NKNGSWGPKTK_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1;RP1L1|p.P284Rfs*26|2|0.18|ENSG00000183638|chr8:10613247-10613247|G/-|frameshift_variant	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.8876953125	3	406.219283	1215.63602	-1.4014	-0.00056929	1.8643	0.00075732	0.46287	0.00018803	406.21962950950837	33.801	0.65921	33.626	33.43	34.089	-0.17557					21	16	2	0	0	0	0.024762	1	2412	2412		4.6433	0	1	183150			54129	9254	37799	37861	59283	59283					0.036827201405458254
NKNKEYAE	8	Unmodified	_NKNKEYAE_					0	0	0			REV__nc|ENSG00000100678|P57103-7|SLC8A3	REV__nc|ENSG00000100678|P57103-7|SLC8A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2728576660156	2	498.243264	994.471974	-0.68122	-0.00033941	-1.2149	-0.00060533	-1.8962	-0.00094475	498.2425061038019	40.122	0.26031	40.145	40.088	40.349	0.023006					9	6	2	0	0	0	0.027866	1	3468	3468		16.473	0	1	97942	+		54130	36522	37800	37862	59284	59284					-0.02548297350199391
NKNKEYAE	8	Unmodified	_NKNKEYAE_					0	0	0			REV__nc|ENSG00000100678|P57103-7|SLC8A3	REV__nc|ENSG00000100678|P57103-7|SLC8A3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.243264	994.471974	-0.63396	-0.00031587	2.2167	0.0011045	1.5828	0.0007886	498.2453113769011	40.289	0.22005	40.14	39.969	40.189	-0.1497	-0.0026442	0.0020346	NaN	30.504	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103720	+		54131	36522	37800	37862							-0.02548297350199391
NKNLISKLS	9	Unmodified	_NKNLISKLS_					0	0	0			REV__nc|ENSG00000125851|P16519-3|PCSK2	REV__nc|ENSG00000125851|P16519-3|PCSK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.27740478515625	2	508.808574	1015.60259	-0.56349	-0.00028671	0.99958	0.00050859	0.43609	0.00022189	508.8086965190837	35.535	0.38104	35.349	35.14	35.521	-0.18675					19	9	3	0	0	0	0.024457	1	2687	2687		15.642	0	1	206710	+		54132	22852	37801	37863	59285	59285					0.09541718368666352
NKNLRSFGNL	10	Unmodified	_NKNLRSFGNL_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.2813720703125	2	581.820004	1161.62546	-0.45821	-0.0002666	0.074224	4.3185E-05	-0.38399	-0.00022341	581.8194064126905	49.318	0.38583	49.218	48.992	49.377	-0.1008					22	9	4	0	0	0	0.03519	1	4964	4964		20.947	3.582	1	267100	+		54133	27802	37802	37864	59286	59286					0.0511073748614308
NKNPQHKN	8	Unmodified	_NKNPQHKN_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2590026855469	2	490.25704	978.499526	0.70772	0.00034696	1.421	0.00069665	2.1287	0.0010436	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	0.99042	1	13169	13169		38.806	3.1879	1	4976900	+		54134	19892	37803	37865	59287	59287					0.009416507007017572
NKNQTEELY	9	Unmodified	_NKNQTEELY_					0	0	0			REV__nc|ENSG00000118507|O43687-2|AKAP7	REV__nc|ENSG00000118507|O43687-2|AKAP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.77490234375	2	569.772385	1137.53022	-0.1028	-5.8573E-05	3.817	0.0021748	3.7142	0.0021162	569.7745279378651	77.793	1.7871	77.632	77.311	79.098	-0.16196					81	41	5	0	0	0	0.35646	1	9243	9243		68.787	15.85	1	8885900	+		54135	22411	37804	37866	59288	59288					-0.03304660495564349
NKNRHRID	8	Unmodified	_NKNRHRID_					0	0	0		ENSG00000163875|ENST00000296214|MEAF6	ENSG00000163875|ENST00000296214|MEAF6	ENSG00000163875|ENST00000296214|MEAF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2691650390625	2	526.789038	1051.56352	0.12378	6.5203E-05	3.4874	0.0018371	3.6112	0.0019023	527.291820473212	49.417	0.38369	49.235	48.96	49.344	-0.18206					16	9	3	0	0	0	0.027866	1	4957	4957		24.203	0	1	150730			54136	7164	37805	37867	59289	59289					0.039804308576549374
NKNTTKFLLY	10	Unmodified	_NKNTTKFLLY_					0	0	0			REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF	REV__ENST00000176763.9_1_5:171470328-171470631:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	621.3140869140625	2	621.348063	1240.68157	-1.5564	-0.00096705	4.0384	0.0025093	2.4821	0.0015422	621.8525904274276	66.559	0.10892	66.335	66.259	66.368	-0.22374					4	2	2	0	0	0	0.03519	1	7637	7637		71.877	0	1	33936	+		54137	29287	37806	37868	59290	59290					0.07085945602943866
NKNWNSIL	8	Unmodified	_NKNWNSIL_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7831115722656	2	494.764166	987.513779	-0.14143	-6.9972E-05	0.37522	0.00018564	0.23379	0.00011567	494.7645103906792	50.553	0.70641	50.441	50.043	50.749	-0.11163					39	18	3	0	0	0	0.027866	1	5090	5090		33.516	12.569	1	860670	+		54138	24894	37807	37869	59291	59291					0.019523031289850223
NKNWNSIL	8	Unmodified	_NKNWNSIL_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.764166	987.513779	0.29875	0.00014781	0.23257	0.00011507	0.53132	0.00026288	494.7642959904081	50.8	0.70461	50.524	50.149	50.853	-0.27643	0.03484	-0.00013184	NaN	18.324	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100700	+		54139	24894	37807	37869							0.019523031289850223
NKNWNSIL	8	Unmodified	_NKNWNSIL_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.764166	987.513779	0.27795	0.00013752	0.6273	0.00031036	0.90525	0.00044788	494.764670614941	50.683	0.62523	50.502	50.245	50.87	-0.18071	0.013206	0.00025875	NaN	18.324	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985570	+		54140	24894	37807	37869							0.019523031289850223
NKNYTYVFLIA	11	Unmodified	_NKNYTYVFLIA_					0	0	0		ENST00000263398.10_1_11:35251130-35251223:+|nuORF	ENST00000263398.10_1_11:35251130-35251223:+|nuORF	ENST00000263398.10_1_11:35251130-35251223:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.8658752441406	3	449.243206	1344.70779	-1.0701	-0.00048075	-1.3117	-0.00058927	-2.3818	-0.00107	449.5769517251304	48.493	0.57692	48.218	47.928	48.505	-0.27598					35	15	3	0	0	0	0.024771	1	4753	4753		34.087	0	1	252170			54141	11533	37808	37870	59292	59292					0.04922214774433087
NKPAAPKQQV	10	Unmodified	_NKPAAPKQQV_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|46	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.7881469726562	2	540.811648	1079.60874	-0.84056	-0.00045459	0.097016	5.2467E-05	-0.74355	-0.00040212	540.8115737439837	46.85	0.63858	46.697	46.376	47.015	-0.15301					40	16	4	0	0	0	0.03519	1	4634	4634		104.75	27.972	1	1237500	+		54142	19461	37809	37871	59293	59293					0.07212236600162214
NKPDHHFL	8	Unmodified	_NKPDHHFL_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.274169921875	2	504.256508	1006.49846	-0.43528	-0.00021949	-3.2351	-0.0016313	-3.6704	-0.0018508	504.7568256452514	27.068	0.20969	26.826	26.744	26.954	-0.24217					6	4	2	0	0	0	0.027866	1	1468	1468		60.294	0	1	53012			54143	2826	37810	37872	59294	59294					-0.004525636681933065
NKPEEGLKEL	10	Unmodified	_NKPEEGLKEL_					0	0	0		ENSG00000149742|ENST00000279178|SLC22A9;ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000149742|ENST00000279178|SLC22A9;ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	579.3179321289062	2	578.814053	1155.61355	-0.76251	-0.00044135	1.8427	0.0010666	1.0802	0.00062521	579.3158482627514	99.401	0.74479	99.401	99.001	99.746	0					45	15	4	0	0	0	0.74632	1	12732	12732		64.207	0	1	155560			54144	9899;6117	37811	37873	59295	59295					0.04197075952288287
NKPMVTVKP	9	Unmodified	_NKPMVTVKP_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.81304931640625	2	507.294245	1012.57394	-0.11544	-5.8564E-05	-2.8305	-0.0014359	-2.9459	-0.0014944	507.7944603007989	76.642	0.20341	76.642	76.516	76.719	0					5	4	2	0	0	0	0.024367	1	9456	9456		44.377	0.75114	1	50226	+		54145	24228	37812	37874	59296	59296					0.06815277467876513
NKPPPPNTDP	10	Unmodified	_NKPPPPNTDP_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2838745117188	2	538.772188	1075.52982	-0.66942	-0.00036067	1.4567	0.00078482	0.78726	0.00042415	538.7726172020858	41.686	0.34437	41.458	41.355	41.699	-0.2278					11	8	2	0	0	0	0.03519	1	3725	3725		32.812	3.6629	1	106420			54146	7604	37813	37875	59297	59297					-0.0049203542478153395
NKPPPPNTDP	10	Unmodified	_NKPPPPNTDP_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.772188	1075.52982	-0.4722	-0.00025441	1.6531	0.00089066	1.1809	0.00063625	538.7722194561162	41.511	0.30017	41.375	41.215	41.515	-0.13553	-0.041221	0.00010876	NaN	32.812	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140810			54147	7604	37813	37875							-0.0049203542478153395
NKPRPGLYL	9	Unmodified	_NKPRPGLYL_					0	0	0			REV__nc|ENSG00000096060|Q13451-2|FKBP5	REV__nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.73828125	2	529.311284	1056.60801	-1.3184	-0.00069785	-1.7563	-0.00092964	-3.0747	-0.0016275	529.8121335759245	21.306	0.39364	21.094	20.872	21.266	-0.2128					11	7	2	0	0	0	0.024541	1	625	625		12.959	0	1	46668	+		54148	36512	37814	37876	59298	59298					0.081974419511198
NKPSFPQAGP	10	Unmodified	_NKPSFPQAGP_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2899169921875	2	521.769448	1041.52434	-0.79086	-0.00041265	-1.6978	-0.00088587	-2.4887	-0.0012985	521.7701265267724	57.156	0.28339	57.156	56.904	57.187	0					11	7	2	0	0	0	0.03519	1	6386	6386		37.159	11.709	1	96629	+		54149	28316	37815	37877	59299	59299					0.005242857834218739
NKPTKLQH	8	Unmodified	_NKPTKLQH_					0	0	0		ENST00000474981.1_1_22:24451582-24452941:+|nuORF	ENST00000474981.1_1_22:24451582-24452941:+|nuORF	ENST00000474981.1_1_22:24451582-24452941:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2789611816406	2	483.279983	964.545414	-0.51301	-0.00024793	-1.7325	-0.00083728	-2.2455	-0.0010852	483.2792227885441	94.336	1.9734	94.198	93.181	95.155	-0.13779					109	45	5	0	0	0	0.97924	1	11639	11639		40.573	5.3719	1	1254500			54150	15045	37816	37878	59300	59300					0.06172295882936396
NKPVCFVPT	9	Unmodified	_NKPVCFVPT_					0	0	0		ENSG00000221859|ENST00000380095|KRTAP10-10	ENSG00000221859|ENST00000380095|KRTAP10-10	ENSG00000221859|ENST00000380095|KRTAP10-10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7508544921875	2	502.76532	1003.51609	-1.5182	-0.00076327	-2.2847	-0.0011487	-3.8029	-0.001912	502.76417325139005	33.835	0.79387	33.659	32.948	33.742	-0.17557					35	19	3	0	0	0	0.024381	1	2399	2399		10.265	0	1	506540			54151	10616	37817	37879	59301	59301					0.014470155424533004
NKPYPVRAK	9	Unmodified	_NKPYPVRAK_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1;ENST00000587561.1_1_18:57020403-57026476:-|nuORF;LMAN1|p.K232Tfs*9|1|0.09|ENSG00000074695|chr18:59349181-59349182|-/ACATTGTTCGG|frameshift_variant	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.28759765625	2	536.816733	1071.61891	-1.1223	-0.00060248	-0.28606	-0.00015356	-1.4084	-0.00075604	536.8165208885176	65.987	0.65491	65.774	65.421	66.076	-0.21327					34	15	3	0	0	0	0.024412	1	7549	7549		40.573	0	1	1117600			54152	1535	37818	37880	59302	59302					0.08596844325415987
NKQAADIGLVL	11	Unmodified	_NKQAADIGLVL_					0	0	0			REV__ENST00000549584.5_1_14:105453158-105465563:+|nuORF	REV__ENST00000549584.5_1_14:105453158-105465563:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.3321533203125	2	571.332413	1140.65027	0.99589	0.00056898	-1.8598	-0.0010626	-0.86396	-0.00049361	571.3311875592482	63.898	1.0116	63.944	63.475	64.486	0.045502					56	26	3	0	0	0	0.51994	1	7436	7436		75.043	7.5496	1	2257000	+		54153	23990	37819	37881	59303	59303					0.08557372568839128
NKQCDHFAC	9	Unmodified	_NKQCDHFAC_					0	0	0			REV__nc|ENSG00000169064|A8MT70|ZBBX	REV__nc|ENSG00000169064|A8MT70|ZBBX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3128662109375	2	533.215669	1064.41678	-0.59584	-0.00031771	0.34737	0.00018522	-0.24847	-0.00013249	533.2156755416322	35.532	0.47213	35.317	35.062	35.534	-0.21555					20	11	2	0	0	0	0.024495	1	2731	2731		26.693	0	1	335070	+		54154	26314	37820	37882	59304	59304					-0.11284750413960865
NKQDQTLTI	9	Unmodified	_NKQDQTLTI_					0	0	0		nc|ENSG00000224411|Q14568|HSP90AA2P	nc|ENSG00000224411|Q14568|HSP90AA2P	nc|ENSG00000224411|Q14568|HSP90AA2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.7854614257812	2	530.785296	1059.55604	-0.62495	-0.00033171	0.24356	0.00012928	-0.38139	-0.00020244	530.7853977124307	53.458	0.94771	53.458	53.196	54.144	0					51	26	2	0	0	0	0.19099	3	5777	5777;5788;5800		90.37	5.209	1	5639300			54155	18731	37821	37883	59305;59306;59307	59305					0.028642337467317702
NKQDQTLTI	9	Unmodified	_NKQDQTLTI_					0	0	0		nc|ENSG00000224411|Q14568|HSP90AA2P	nc|ENSG00000224411|Q14568|HSP90AA2P	nc|ENSG00000224411|Q14568|HSP90AA2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7852172851562	2	530.785296	1059.55604	-0.94865	-0.00050353	0.52909	0.00028083	-0.41956	-0.00022269	530.7855351999049	53.535	0.95507	53.388	53.132	54.088	-0.14723					52	26	2	0	0	0	0.48817	1	5775	5775		60.118	1.3363	1	4591500			54156	18731	37821	37883	59308	59308					0.028642337467317702
NKQEFFVAL	9	Unmodified	_NKQEFFVAL_					0	0	0		ENST00000471391.1_1_1:51926726-51984921:-|nuORF;ENST00000371727.5_1_1:51924189-51984903:-|nuORF;EPS15|p.D795Efs*8|1|0.11|ENSG00000085832|chr1:51361330-51361331|-/ATCTTTAAAGAGT|frameshift_variant;ENSG00000085832|ENST00000371733|EPS15	ENST00000471391.1_1_1:51926726-51984921:-|nuORF	ENST00000471391.1_1_1:51926726-51984921:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8137817382812	2	548.295299	1094.57605	-1.0883	-0.0005967	-2.8442	-0.0015594	-3.9324	-0.0021561	548.2944317781353	56.546	1.2987	56.381	55.546	56.845	-0.16431					78	35	4	0	0	0	0.024374	1	6305	6305		58.782	14.665	1	1595800			54157	14957	37822	37884	59309	59309					0.03254029477329823
NKQHIFNI	8	Unmodified	_NKQHIFNI_					0	0	0		ENST00000545872.1_1_19:53138403-53141591:-|nuORF	ENST00000545872.1_1_19:53138403-53141591:-|nuORF	ENST00000545872.1_1_19:53138403-53141591:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8134460449219	2	507.279983	1012.54541	-0.12529	-6.3559E-05	-1.776	-0.0009009	-1.9012	-0.00096446	507.2775727333688	93.029	0.21614	92.885	92.785	93.002	-0.1441					6	4	2	0	0	0	0.027866	1	11416	11416		26.796	0	1	17385			54158	16499	37823	37885	59310	59310					0.03964295882940405
NKQIKNAD	8	Unmodified	_NKQIKNAD_					0	0	0			REV__ENST00000322244.9_1_4:68527944-68528905:-|nuORF	REV__ENST00000322244.9_1_4:68527944-68528905:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.28680419921875	2	465.753798	929.493044	0.28989	0.00013502	-2.9228	-0.0013613	-2.6329	-0.0012263	465.7521319590934	61.69	0.36572	61.761	61.59	61.956	0.071129					17	9	2	0	0	0	0.027866	1	7054	7054		29.15	1.2673	1	206340	+		54159	30359	37824	37886	59311	59311					0.025477127493218177
NKQKKKTGVM	10	Oxidation (M)	_NKQKKKTGVM(Oxidation (M))_		NKQKKKTGVM(1)		NKQKKKTGVM(51)	0	0	1		ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant;nc|ENSG00000171456|Q8IXJ9-2|ASXL1;ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant;ASXL1|p.K539Sfs*164|1|0.35|ENSG00000171456|chr20:32433813-32433813|A/-|frameshift_variant	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3424072265625	2	589.339715	1176.66488	0.92698	0.00054631	3.7923	0.002235	4.7193	0.0027813	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	0.94316	1	11459	11459		51.193	18.38	1	4746700			54160	8152	37825	37887	59312	59312		338			0.08361121445341269
NKQKKLLK	8	Unmodified	_NKQKKLLK_					0	0	0		nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1;ENST00000462710.5_1_1:24969817-24973316:+|nuORF	nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENST00000462710.5_1_1:24969817-24973316:+|nuORF	nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	500.337301	998.66005	0.053812	2.6924E-05	-0.24844	-0.0001243	-0.19462	-9.7377E-05	500.3369214740671	24.18	0.31053	23.965	23.778	24.089	-0.2151					10	6	2	0	0	0	0.027866	1	1034	1034		13.775	0	1	57025			54161	4693;14713	37826	37888	59313	59313					0.1606660536489244
NKQKQAQL	8	Unmodified	_NKQKQAQL_					0	0	0		ENST00000445846.1_1_10:17735221-17735257:+|nuORF	ENST00000445846.1_1_10:17735221-17735257:+|nuORF	ENST00000445846.1_1_10:17735221-17735257:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27764892578125	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	1.0338	1	10189	10189		31.955	1.4512	1	7774800			54162	14445	37827	37889	59314	59314					0.06031992020314192
NKQKQAQL	8	Unmodified	_NKQKQAQL_					0	0	0		ENST00000445846.1_1_10:17735221-17735257:+|nuORF	ENST00000445846.1_1_10:17735221-17735257:+|nuORF	ENST00000445846.1_1_10:17735221-17735257:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27734375	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	1.0574	1	10197	10197		24.203	0.68005	1	7158600			54163	14445	37827	37889	59315	59315					0.06031992020314192
NKQKSVTAKD	10	Unmodified	_NKQKSVTAKD_					0	0	0		ENSG00000151789|ENST00000281523|ZNF385D;ENST00000495739.1_1_3:21478408-21552461:-|nuORF	ENSG00000151789|ENST00000281523|ZNF385D	ENSG00000151789|ENST00000281523|ZNF385D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7538452148438	2	559.811845	1117.60914	-0.0091511	-5.1229E-06	-0.75817	-0.00042443	-0.76733	-0.00042956	559.814230906494	55.925	0.70154	55.709	55.336	56.038	-0.21607					40	16	3	0	0	0	0.03519	1	5999	5999		21.686	3.3613	1	608640			54164	6230	37828	37890	59316	59316					0.05503611529388763
NKQKSVTAKD	10	Unmodified	_NKQKSVTAKD_					0	0	0		ENSG00000151789|ENST00000281523|ZNF385D;ENST00000495739.1_1_3:21478408-21552461:-|nuORF	ENSG00000151789|ENST00000281523|ZNF385D	ENSG00000151789|ENST00000281523|ZNF385D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.75390625	2	559.811845	1117.60914	-1.4307	-0.00080091	0.24284	0.00013594	-1.1878	-0.00066497	560.3114600018018	55.884	0.8247	55.668	55.373	56.198	-0.21551					38	17	3	0	0	0	0.03519	1	5988	5988		15.333	0.63944	1	472780			54165	6230	37828	37890	59317	59317					0.05503611529388763
NKQLIQSTV	9	Unmodified	_NKQLIQSTV_					0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2844848632812	2	515.798206	1029.58186	0.53189	0.00027435	4.0724	0.0021005	4.6043	0.0023749	516.3023155099695	85.166	0.62181	85.028	84.789	85.41	-0.13752					21	14	2	0	0	0	0.024523	1	10316	10316		21.96	1.013	1	35624	+		54166	26176	37829	37891	59318	59318					0.06825127988986424
NKQLLKTAP	9	Unmodified	_NKQLLKTAP_					0	0	0			REV__ENSG00000131016|ENST00000402676|AKAP12	REV__ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.81085205078125	2	506.811116	1011.60768	-0.49653	-0.00025165	-1.7249	-0.00087418	-2.2214	-0.0011258	506.8111339547124	56.714	1.0925	56.714	56.174	57.266	0					59	30	4	0	0	0	0.37611	1	6335	6335		67.494	5.3863	1	4233300	+		54167	23177	37830	37892	59319	59319					0.1023402223128187
NKQLQLQP	8	Unmodified	_NKQLQLQP_					0	0	0			REV__ENST00000467006.6_1_11:126153032-126158363:+|nuORF	REV__ENST00000467006.6_1_11:126153032-126158363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.31134033203125	2	484.779816	967.545079	-0.60891	-0.00029519	-0.18701	-9.0659E-05	-0.79592	-0.00038584	484.7799170438602	44.522	0.90136	44.559	44.306	45.207	0.0369					42	25	2	0	0	0	0.027866	1	4171	4171		18.324	0	1	1971700	+		54168	33054	37831	37893	59320	59320					0.06000876163091107
NKQLQLQP	8	Unmodified	_NKQLQLQP_					0	0	0			REV__ENST00000467006.6_1_11:126153032-126158363:+|nuORF	REV__ENST00000467006.6_1_11:126153032-126158363:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7488098144531	2	484.779816	967.545079	-0.022391	-1.0855E-05	4.2018	0.002037	4.1794	0.0020261	484.78166348650916	70.148	0.66031	69.898	69.483	70.143	-0.25063					25	15	2	0	0	0	0.027866	1	8143	8143		47.916	3.7988	1	239930	+		54169	33054	37831	37893	59321	59321					0.06000876163091107
NKQPIKVTV	9	Unmodified	_NKQPIKVTV_					0	0	0			REV__nc|ENSG00000128918|O94788-4|ALDH1A2	REV__nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3171997070312	2	513.818941	1025.62333	-0.4706	-0.0002418	0.31463	0.00016166	-0.15597	-8.0139E-05	513.8187901063804	32.051	0.66549	32.063	31.823	32.488	0.011799					29	15	3	0	0	0	0.024539	1	2237	2237		20.947	3.582	1	274970	+		54170	23019	37832	37894	59322	59322					0.11154308748314179
NKQPLKQKV	9	Unmodified	_NKQPLKQKV_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7926025390625	2	541.837665	1081.66078	-0.99834	-0.00054094	-0.060916	-3.3007E-05	-1.0593	-0.00057395	541.8374386775436	44.56	0.58286	44.596	44.34	44.923	0.0369					38	16	3	0	0	0	0.024523	1	4201	4201		21.96	6.3181	1	489100	+		54171	20676	37833	37895	59323	59323					0.1232140001393418
NKQPVKVT	8	Unmodified	_NKQPVKVT_					0	0	0			REV__nc|ENSG00000111275|P05091-2|ALDH2	REV__nc|ENSG00000111275|P05091-2|ALDH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.2640380859375	2	457.276909	912.539266	0.21091	9.6445E-05	-0.38228	-0.00017481	-0.17137	-7.8363E-05	457.2759514506308	82.712	0.30424	82.532	82.418	82.722	-0.18079					8	6	2	0	0	0	0.027866	1	9976	9976		23.042	1.0826	1	37513	+		54172	21905	37834	37896	59324	59324					0.07949777651424483
NKQPVKVTV	9	Unmodified	_NKQPVKVTV_					0	0	0			REV__nc|ENSG00000111275|P05091-2|ALDH2	REV__nc|ENSG00000111275|P05091-2|ALDH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7847595214844	2	506.811116	1011.60768	0.19527	9.8964E-05	3.7066	0.0018785	3.9018	0.0019775	506.81276486799766	71.965	0.47803	71.69	71.511	71.989	-0.27509					16	11	2	0	0	0	0.024495	1	8435	8435		19.997	8.4858	1	92291	+		54173	21905	37835	37897	59325	59325					0.1023402223128187
NKQPVKVTV	9	Unmodified	_NKQPVKVTV_					0	0	0			REV__nc|ENSG00000111275|P05091-2|ALDH2	REV__nc|ENSG00000111275|P05091-2|ALDH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.811116	1011.60768	0.025618	1.2983E-05	3.4692	0.0017582	3.4948	0.0017712	506.81258777844516	71.791	0.39833	71.585	71.382	71.78	-0.20613	-0.052502	-0.00015361	NaN	25.574	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109050	+		54174	21905	37835	37897							0.1023402223128187
NKQQVPSG	8	Unmodified	_NKQQVPSG_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1-LIN9|1|fusion	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.2275695800781	2	429.227417	856.44028	-0.37951	-0.0001629	1.2222	0.00052459	0.84265	0.00036169	429.2277786384335	27.237	1.1661	27.224	26.828	27.994	-0.012983					56	30	3	0	0	0	0.6536	1	1475	1475		71.296	0	1	1354100			54175	5688	37836	37898	59326	59326					0.006317546865261647
NKQRAIDL	8	Unmodified	_NKQRAIDL_					0	0	0			REV__ENSG00000187325|ENST00000341864|TAF9B	REV__ENSG00000187325|ENST00000341864|TAF9B	MSMS	OPSCC_40_ClassI_Rep-1	4	479.2777099609375	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.719	1	85.523	85.023	86.023	-0.19508								0	0	0	0.73703	1	10385	10385		38.806	0	1		+		54176	27929	37837	37899	59327	59327					0.06031992020314192
NKQRKTKCK	9	Unmodified	_NKQRKTKCK_					0	0	0			REV__ENSG00000139211|ENST00000550413|AMIGO2	REV__ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3295288085938	2	567.332224	1132.6499	-0.43786	-0.00024841	-3.8547	-0.0021869	-4.2926	-0.0024353	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.80003	1	11262	11262		39.253	3.6345	1	4134200	+		54177	23927	37838	37900	59328	59328					0.08887674367997533
NKQRKTKCK	9	Unmodified	_NKQRKTKCK_					0	0	0			REV__ENSG00000139211|ENST00000550413|AMIGO2	REV__ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3307495117188	2	567.332224	1132.6499	-0.10765	-6.1074E-05	-4.2291	-0.0023993	-4.3367	-0.0024604	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	0.82115	1	10954	10954		37.812	2.1932	1	5896300	+		54178	23927	37838	37900	59329	59329					0.08887674367997533
NKQVLKAIE	9	Unmodified	_NKQVLKAIE_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7839965820312	2	521.816399	1041.61824	-0.0054442	-2.8409E-06	1.2006	0.00062648	1.1951	0.00062364	521.8164031841408	68.247	1.2141	67.955	67.342	68.556	-0.29267					40	30	2	0	0	0	0.024257	1	8138	8138		49.536	0	1	446010	+		54179	28501	37839	37901	59330	59330					0.09910004885728085
NKQYKLLSI	9	Unmodified	_NKQYKLLSI_					0	0	0			REV__ENST00000515764.2_1_4:25930809-25931061:+|nuORF	REV__ENST00000515764.2_1_4:25930809-25931061:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.830810546875	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	0.75397	1	10684	10684		42.396	3.1433	1	1623500	+		54180	34210	37840	37902	59331	59331					0.10094577919812764
NKQYPSEA	8	Unmodified	_NKQYPSEA_					0	0	0			REV__ENST00000254166.3_1_19:58944554-58944689:-|nuORF	REV__ENST00000254166.3_1_19:58944554-58944689:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.2635192871094	2	468.724707	935.43486	0.56375	0.00026425	-0.6192	-0.00029023	-0.055448	-2.599E-05	468.7243117304672	47.123	0.82122	46.97	46.55	47.371	-0.15301					59	21	4	0	0	0	0.027866	1	4690	4690		45.952	1.8352	1	1710300	+		54181	29525	37841	37903	59332	59332					-0.03543968895951366
NKRAHGQDLG	10	Unmodified	_NKRAHGQDLG_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.264404296875	2	548.286328	1094.5581	-0.92292	-0.00050602	1.8868	0.0010345	0.96385	0.00052846	548.2871147893339	46.317	0.5532	46.115	45.819	46.372	-0.20226					38	14	4	0	0	0	0.03519	1	4402	4402		21.96	7.095	1	596330			54182	9694	37842	37904	59333	59333					0.01460707275191453
NKRAMRRTG	9	Unmodified	_NKRAMRRTG_					0	0	0			REV__nc|ENSG00000074370|Q93084-4|ATP2A3	REV__nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.282470703125	2	545.306541	1088.59853	-0.53147	-0.00028981	1.9652	0.0010716	1.4337	0.00078183	545.8097302135284	60.612	0.68437	60.406	60.011	60.695	-0.20599					17	16	2	0	0	0	0.024427	1	6704	6704		42.396	19.354	1	200500	+		54183	20524	37843	37905	59334	59334					0.057773503939415605
NKRAQTVL	8	Unmodified	_NKRAQTVL_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2802429199219	2	465.279983	928.545414	-0.14705	-6.8421E-05	-0.0093294	-4.3408E-06	-0.15638	-7.2762E-05	465.2799182394463	24.656	0.58713	24.441	24.177	24.764	-0.2151					29	13	3	0	0	0	0.71833	1	1096	1096		65.803	4.8312	1	1760600	+		54184	23378	37844	37906	59335	59335					0.07828295882939074
NKRAQTVL	8	Unmodified	_NKRAQTVL_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.2801513671875	2	465.279983	928.545414	-0.10815	-5.032E-05	0.19634	9.1352E-05	0.088188	4.1032E-05	465.2800347976175	24.491	0.81638	24.316	24.048	24.865	-0.17484					39	18	3	0	0	0	0.37125	1	1071	1071		101.21	38.233	1	1717300	+		54185	23378	37844	37906	59336	59336					0.07828295882939074
NKRAVQGP	8	Unmodified	_NKRAVQGP_					0	0	0		nc|ENSG00000102524|Q9Y275-3|TNFSF13B;nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.25189208984375	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	0.96719	2	9620	9620;9691		42.474	8.9589	1	1590300			54186	2411	37845	37907	59337;59338	59337					0.04839453677379879
NKRDQTPN	8	Unmodified	_NKRDQTPN_					0	0	0		ENST00000600804.1_1_19:59065240-59065579:-|nuORF	ENST00000600804.1_1_19:59065240-59065579:-|nuORF	ENST00000600804.1_1_19:59065240-59065579:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2799987792969	2	486.746505	971.478456	-0.59264	-0.00028846	3.8841	0.0018906	3.2914	0.0016021	486.7483892664848	50.478	0.33239	50.559	50.377	50.71	0.08099					15	9	2	0	0	0	0.027866	1	5234	5234		74.255	5.4682	1	234510			54187	17505	37846	37908	59339	59339					-0.008423593988254652
NKRENSEDPE	10	Unmodified	_NKRENSEDPE_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58740234375	3	406.517946	1216.53201	0.38598	0.00015691	0.84655	0.00034414	1.2325	0.00050105	406.5181200122499	26.012	0.61417	25.841	25.371	25.985	-0.17078					32	16	3	0	0	0	0.03519	1	1224	1224		17.833	0	1	645980			54188	1359	37847	37909	59340	59340					-0.06759651477591433
NKRFLNVQ	8	Unmodified	_NKRFLNVQ_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2743835449219	2	509.793258	1017.57196	-0.21109	-0.00010761	3.9867	0.0020324	3.7757	0.0019248	510.29764676307275	76.511	0.42938	76.343	76.095	76.525	-0.16854					12	9	2	0	0	0	0.027866	1	9069	9069		18.324	0	1	52674			54189	7105	37848	37910	59341	59341					0.06387984774266897
NKRFVKKRFVI	11	Unmodified	_NKRFVKKRFVI_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2354431152344	3	478.973384	1433.89832	0.33924	0.00016249	2.2204	0.0010635	2.5596	0.001226	478.9743516979137	45.597	1.7884	45.597	44.691	46.48	0					125	51	3	0	0	0	0.024845	1	4346	4346		6.3209	0	1	686170	+		54190	25874	37849	37911	59342	59342					0.19872965947138255
NKRFVKKRFVI	11	Unmodified	_NKRFVKKRFVI_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.23565673828125	3	478.973384	1433.89832	-0.41405	-0.00019832	2.9853	0.0014299	2.5712	0.0012315	478.97473755747563	45.806	1.6869	45.655	44.59	46.277	-0.15156					111	48	4	0	0	0	0.024845	1	4359	4359		14.694	11.482	1	655970	+		54191	25874	37849	37911	59343	59343					0.19872965947138255
NKRFWNCF	8	Unmodified	_NKRFWNCF_					0	0	0			REV__ENST00000542038.5_1_12:21654737-21661387:+|nuORF	REV__ENST00000542038.5_1_12:21654737-21661387:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.8091430664062	2	557.766186	1113.51782	0.092043	5.1339E-05	1.3345	0.00074434	1.4266	0.00079568	557.7671357324771	52.453	0.43814	52.545	52.2	52.638	0.091938					14	10	2	0	0	0	0.027866	1	5508	5508		7.6903	0	1	93634	+		54192	34785	37850	37912	59344	59344					-0.03439930648937661
NKRGRKGI	8	Unmodified	_NKRGRKGI_					0	0	0		nc|ENSG00000135148|O14545-2|TRAFD1	nc|ENSG00000135148|O14545-2|TRAFD1	nc|ENSG00000135148|O14545-2|TRAFD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2794189453125	2	464.793592	927.572632	0.23296	0.00010828	2.4873	0.0011561	2.7203	0.0012644	464.79462987619854	52.18	0.78005	52.272	51.894	52.674	0.091938					31	19	2	0	0	0	0.027866	1	5462	5462		24.203	5.8783	1	465470			54193	18292	37851	37913	59345	59345					0.10594824213978882
NKRKDLGL	8	Unmodified	_NKRKDLGL_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2879333496094	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.0574	1	11749	11749		25.45	0	1	42478000	+		54194	22644	37852	37914	59346	59346					0.08748582399982752
NKRKKMRRKRK	11	Unmodified	_NKRKKMRRKRK_					0	0	0		SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant;nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3	SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2738037109375	3	510.331688	1527.97324	-1.3502	-0.00068905	2.9077	0.0014839	1.5575	0.00079486	510.3326572667836	90.531	0.29732	90.531	90.297	90.594	0					9	6	2	0	0	0	0.02489	1	11444	11444		3.026	1.794	1	84818			54195	9327	37853	37915	59347	59347					0.2303682520671373
NKRKNKPP	8	Unmodified	_NKRKNKPP_					0	0	0		ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant;ENSG00000168916|ENST00000513986|ZNF608;nc|ENSG00000168916|Q9ULD9-2|ZNF608	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.30242919921875	2	491.30125	980.587947	-0.05885	-2.8913E-05	2.8135	0.0013823	2.7547	0.0013534	491.3025230644942	95.459	0.89596	95.459	95.179	96.075	0					62	20	4	0	0	0	0.96719	1	12186	12186		42.474	0.078325	1	1437100			54196	38201	37854	37916	59348	59348					0.09687691011174593
NKRKPLSLG	9	Unmodified	_NKRKPLSLG_					0	0	0		nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.28338623046875	2	506.816733	1011.61891	0.015406	7.8083E-06	-0.0045244	-2.293E-06	0.010882	5.5152E-06	506.8167506861425	18.705	0.34303	18.574	18.302	18.645	-0.13147					9	6	2	0	0	0	0.024381	1	289	289		15.642	0	1	19949			54197	964	37855	37917	59349	59349					0.1135684432541666
NKRKVPGF	8	Unmodified	_NKRKVPGF_					0	0	0		ENST00000474441.1_1_3:88107164-88107287:-|nuORF;ENST00000309534.10_1_3:88105133-88107287:-|nuORF	ENST00000474441.1_1_3:88107164-88107287:-|nuORF	ENST00000474441.1_1_3:88107164-88107287:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7524719238281	2	473.285069	944.555585	0.071715	3.3942E-05	-0.42709	-0.00020214	-0.35538	-0.0001682	473.2847543467229	33.634	0.53595	33.641	33.423	33.959	0.0066261					26	13	3	0	0	0	0.027866	1	2477	2477		20.482	0	1	336340			54198	12045	37856	37918	59350	59350					0.08108903608183482
NKRKVPGF	8	Unmodified	_NKRKVPGF_					0	0	0		ENST00000474441.1_1_3:88107164-88107287:-|nuORF;ENST00000309534.10_1_3:88105133-88107287:-|nuORF	ENST00000474441.1_1_3:88107164-88107287:-|nuORF	ENST00000474441.1_1_3:88107164-88107287:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.285069	944.555585	-0.24569	-0.00011628	1.721	0.00081452	1.4753	0.00069824	473.2843396663349	33.47	0.34887	33.27	33.016	33.365	-0.20019	-0.18553	0.0018629	NaN	28.254	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72725			54199	12045	37856	37918							0.08108903608183482
NKRLKKGGDA	10	Unmodified	_NKRLKKGGDA_					0	0	0			REV__ENSG00000075884|ENST00000295095|ARHGAP15	REV__ENSG00000075884|ENST00000295095|ARHGAP15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2438354492188	2	543.822547	1085.63054	-0.51246	-0.00027869	2.9126	0.001584	2.4002	0.0013053	543.8239672997948	67.323	0.70655	67.1	66.858	67.565	-0.22374					37	16	3	0	0	0	0.03519	1	7734	7734		18.262	2.6203	1	683030	+		54200	20559	37857	37919	59351	59351					0.09115041348763953
NKRLLLLH	8	Unmodified	_NKRLLLLH_					0	0	0			REV__ENST00000418664.2_2_6:7583550-7583592:+|nuORF	REV__ENST00000418664.2_2_6:7583550-7583592:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.77191162109375	2	503.829643	1005.64473	-0.53513	-0.00026961	-0.45704	-0.00023027	-0.99217	-0.00049988	503.8293220638689	48.637	0.48557	48.637	48.344	48.83	0					20	13	2	0	0	0	0.027866	1	5003	5003		28.254	6.5519	1	185340	+		54201	32122	37858	37920	59352	59352					0.14213738567718792
NKRLPALLEKN	11	Unmodified	_NKRLPALLEKN_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;nc|ENSG00000123104|Q14571-2|ITPR2;ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant;ITPR3|p.D722Efs*12|1|0.07|ENSG00000096433|chr6:33669133-33669133|C/-|frameshift_variant;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant;ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.59771728515625	3	432.597983	1294.77212	0.3206	0.00013869	-0.92363	-0.00039956	-0.60302	-0.00026087	432.5974556080167	105.47	1.1984	105.34	104.83	106.03	-0.12444					83	37	4	0	0	0	1.0624	1	13122	13122		37.6	16.763	1	2220000			54202	6165;2051;3956	37859	37921	59353	59353					0.13652414651232903
NKRMGSEW	8	Unmodified	_NKRMGSEW_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7667541503906	2	504.240001	1006.46545	-1.0913	-0.00055028	3.6612	0.0018461	2.5699	0.0012959	504.2384893993395	65.754	0.53758	65.541	65.215	65.753	-0.21327					21	9	3	0	0	0	0.027866	1	7535	7535		31.955	6.3808	1	137370	+		54203	21946	37860	37922	59354	59354					-0.037525137825468846
NKRMIELI	8	Oxidation (M)	_NKRM(Oxidation (M))IELI_		NKRM(1)IELI		NKRM(77)IELI	0	0	1			REV__ENSG00000123594|ENST00000380622|ATXN3L	REV__ENSG00000123594|ENST00000380622|ATXN3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.795166015625	2	516.797152	1031.57975	-1.4127	-0.00073009	-1.8842	-0.00097377	-3.297	-0.0017039	516.7960099778252	64.931	0.6485	64.669	64.379	65.027	-0.2626					48	16	4	0	0	0	0.59392	1	7633	7633		76.847	9.353	1	4748900	+		54204	22708	37861	37923	59355	59355		676			0.06522375979534445
NKRMIELI	8	Oxidation (M)	_NKRM(Oxidation (M))IELI_		NKRM(1)IELI		NKRM(68)IELI	0	0	1			REV__ENSG00000123594|ENST00000380622|ATXN3L	REV__ENSG00000123594|ENST00000380622|ATXN3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.795166015625	2	516.797152	1031.57975	-1.0159	-0.00052503	-2.2574	-0.0011666	-3.2733	-0.0016916	516.7958500093041	64.641	0.71621	64.686	64.372	65.089	0.045502					50	18	4	0	0	0	0.68535	1	7557	7557		68.485	8.1907	1	4461500	+		54205	22708	37861	37923	59356	59356		676			0.06522375979534445
NKRPSDRRSI	10	Unmodified	_NKRPSDRRSI_					0	0	0			REV__nc|ENSG00000154380|Q8N8S7|ENAH	REV__nc|ENSG00000154380|Q8N8S7|ENAH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.8915710449219	3	410.233815	1227.67962	-0.41703	-0.00017108	2.2563	0.00092563	1.8393	0.00075455	410.2348987909112	28.231	0.69949	28.062	27.768	28.467	-0.16897					33	16	4	0	0	0	0.03519	1	1663	1663		36.318	23.36	1	141820	+		54206	36800	37862	37924	59357	59357					0.07488329637703828
NKRPSPHS	8	Unmodified	_NKRPSPHS_					0	0	0		ENST00000360051.7_1_2:242254915-242256929:+|nuORF	ENST00000360051.7_1_2:242254915-242256929:+|nuORF	ENST00000360051.7_1_2:242254915-242256929:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7373962402344	2	461.746308	921.478063	1.0547	0.00048699	-3.8515	-0.0017784	-2.7968	-0.0012914	461.744320697921	72.555	0.48672	72.565	72.331	72.818	0.0097733					20	11	2	0	0	0	0.027866	1	8781	8781		42.474	8.9589	1	116000			54207	12754	37863	37925	59358	59358					0.014182656719981424
NKRQLERRL	9	Unmodified	_NKRQLERRL_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.56793212890625	3	404.914305	1211.72109	1.8119	0.00073367	0.72259	0.00029259	2.5345	0.0010263	404.91466833313575	42.381	0.67056	42.407	42.12	42.79	0.026012					31	18	3	0	0	0	0.024389	1	3818	3818		28.081	3.5623	1	293850			54208	9889	37864	37926	59359	59359					0.12369510397024897
NKRRAFLD	8	Unmodified	_NKRRAFLD_					0	0	0		ENST00000507209.5_1_4:187118658-187122526:+|nuORF;nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2	ENST00000507209.5_1_4:187118658-187122526:+|nuORF	ENST00000507209.5_1_4:187118658-187122526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8128356933594	2	510.290882	1018.56721	-0.23281	-0.0001188	-0.64393	-0.00032859	-0.87674	-0.00044739	510.290921902857	104.21	0.68536	104.21	103.82	104.5	0					22	15	2	0	0	0	0.027866	1	13370	13370		25.45	3.4903	1	50117			54209	5816	37865	37927	59360	59360					0.058671006315080376
NKRRITDL	8	Unmodified	_NKRRITDL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.8021545410156	2	508.30399	1014.59343	-0.35052	-0.00017817	-3.5864	-0.001823	-3.9369	-0.0020011	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.71833	1	6099	6099		65.803	3.6958	1	8370900			54210	6479	37866	37928	59361	59361					0.08671369802982554
NKRRNSEV	8	Unmodified	_NKRRNSEV_					0	0	0			REV__KIAA1377-YAP1|2|fusion	REV__KIAA1377-YAP1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7785339355469	2	501.775597	1001.53664	-0.20186	-0.00010129	2.1081	0.0010578	1.9062	0.00095651	501.7763903650071	70.044	0.71858	70.056	69.385	70.104	0.012421					28	17	4	0	0	0	0.027866	1	8325	8325		23.042	0	1	644310	+		54211	36179	37867	37929	59362	59362					0.03593322246467778
NKRRRKEA	8	Unmodified	_NKRRRKEA_					0	0	0		ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2890625	2	529.320506	1056.62646	-0.24869	-0.00013163	-4.182	-0.0022136	-4.4307	-0.0023452	529.317540566533	45.56	0.71235	45.604	45.18	45.892	0.043877					53	20	4	0	0	0	0.027866	1	4408	4408		45.952	6.6991	1	1620000			54212	6554	37868	37930	59363	59363					0.10040996645716405
NKRSLNSK	8	Unmodified	_NKRSLNSK_					0	0	0		ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7818603515625	2	473.775065	945.535577	-0.11574	-5.4835E-05	3.581	0.0016966	3.4653	0.0016418	473.7766013280681	23.749	0.52519	23.57	23.477	24.002	-0.17989					20	11	2	0	0	0	0.027866	1	954	954		21.96	0	1	147240			54213	3471	37869	37931	59364	59364					0.06063107877571383
NKRSLPEKM	9	Unmodified	_NKRSLPEKM_					0	0	0			REV__nc|ENSG00000162931|Q9Y577-2|TRIM17	REV__nc|ENSG00000162931|Q9Y577-2|TRIM17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.8046264648438	2	551.805508	1101.59646	0.47988	0.0002648	-0.71178	-0.00039276	-0.2319	-0.00012796	551.8047609504451	71.45	1.4086	71.244	70.492	71.901	-0.20614					83	33	5	0	0	0	0.42604	1	8370	8370		64.207	13.015	1	3232100	+		54214	25511	37870	37932	59365	59365					0.04972876865485887
NKRTISYK	8	Unmodified	_NKRTISYK_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.2914123535156	2	505.293091	1008.57163	0.45051	0.00022764	-3.4282	-0.0017322	-2.9777	-0.0015046	505.2912101133561	96.254	1.7011	96.117	95.767	97.468	-0.1367					76	38	3	0	0	0	1.0338	1	11885	11885		31.955	2.8053	1	931960	+		54215	20350	37871	37933	59366	59366					0.06768565054414921
NKRTLIGAT	9	Unmodified	_NKRTLIGAT_					0	0	0			REV__nc|ENSG00000113361|P55285-2|CDH6	REV__nc|ENSG00000113361|P55285-2|CDH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.30731201171875	2	487.293091	972.571629	0.34229	0.00016679	1.4931	0.00072758	1.8354	0.00089437	487.29324868402256	73.034	0.24592	72.753	72.586	72.832	-0.28124					10	5	3	0	0	0	0.024523	1	8873	8873		15.642	0	1	49383	+		54216	22063	37872	37934	59367	59367					0.08424565054417599
NKRVTHLD	8	Unmodified	_NKRVTHLD_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.22821044921875	2	491.775065	981.535577	-0.14778	-7.2676E-05	-0.13562	-6.6693E-05	-0.2834	-0.00013937	491.7757723464451	62.309	0.15862	62.051	61.977	62.135	-0.25824					5	3	2	0	0	0	0.027866	1	6981	6981		23.042	0	1	30973	+		54217	24336	37873	37935	59368	59368					0.044071078775687056
NKRVVFLAI	9	Unmodified	_NKRVVFLAI_					0	0	0		ENSG00000166192|ENST00000340912|SENP8	ENSG00000166192|ENST00000340912|SENP8	ENSG00000166192|ENST00000340912|SENP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	530.337301	1058.66005	-0.92199	-0.00048897	0.88216	0.00046784	-0.039834	-2.1125E-05	530.337947263836	39.971	0.24868	39.994	39.84	40.088	0.023006					9	6	2	0	0	0	0.024541	1	3424	3424		20.482	0	1	173220			54218	7520	37874	37936	59369	59369					0.13306605364869029
NKSALAPPD	9	Unmodified	_NKSALAPPD_					0	0	0			REV__nc|ENSG00000168003|P08195|SLC3A2	REV__nc|ENSG00000168003|P08195|SLC3A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2693786621094	2	456.742899	911.471246	0.2195	0.00010025	0.10673	4.8749E-05	0.32623	0.000149	456.74279298034344	45.63	1.0331	45.63	45.31	46.343	0					48	29	2	0	0	0	0.024292	1	4403	4403		68.787	26.391	1	2277100	+		54219	19351	37875	37937	59370	59370					0.011969080007588673
NKSALAPPD	9	Unmodified	_NKSALAPPD_					0	0	0			REV__nc|ENSG00000168003|P08195|SLC3A2	REV__nc|ENSG00000168003|P08195|SLC3A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	456.742899	911.471246	-0.50084	-0.00022876	0.79931	0.00036508	0.29847	0.00013632	456.74314130000613	45.689	1.2388	45.538	45.276	46.515	-0.15156	-0.076564	0.00049185	NaN	84.916	71	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2225600	+		54220	19351	37875	37937							0.011969080007588673
NKSALAPPD	9	Unmodified	_NKSALAPPD_					0	0	0			REV__nc|ENSG00000168003|P08195|SLC3A2	REV__nc|ENSG00000168003|P08195|SLC3A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.742899	911.471246	0.078403	3.581E-05	0.37916	0.00017318	0.45756	0.00020899	456.74287345536396	45.592	1.0238	45.636	45.377	46.4	0.043877	0.021874	0.00010804	NaN	84.916	68	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2188000	+		54221	19351	37875	37937							0.011969080007588673
NKSAQVLVQ	9	Unmodified	_NKSAQVLVQ_					0	0	0		BRWD3-FAM155A|1|fusion;nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;ENST00000478415.1_1_X:79999455-80064970:-|nuORF	BRWD3-FAM155A|1|fusion;nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30548095703125	2	493.785099	985.555644	1.2336	0.00060912	-4.2047	-0.0020762	-2.9711	-0.0014671	493.78308533627177	85.358	0.8302	85.358	84.958	85.789	0					25	19	2	0	0	0	0.024292	1	10700	10700		58.782	2.0609	1	173200			54222	7394;192	37876	37938	59371	59371					0.06228858817519267
NKSIYLKQL	9	Unmodified	_NKSIYLKQL_					0	0	0			REV__ENSG00000182492|ENST00000331595|BGN	REV__ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8301391601562	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.70156	1	10704	10704		45.972	4.5456	1	1748900	+		54223	27481	37877	37939	59372	59372					0.10094577919812764
NKSKKSKKG	9	Unmodified	_NKSKKSKKG_					0	0	0		ENST00000489987.1_1_3:128199864-128200883:-|nuORF;nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2	ENST00000489987.1_1_3:128199864-128200883:-|nuORF	ENST00000489987.1_1_3:128199864-128200883:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.8139343261719	2	502.81419	1003.61383	0.45345	0.000228	-1.615	-0.00081203	-1.1615	-0.00058403	502.8134358247894	96.092	3.0449	96.098	95.307	98.352	0.0065079					205	70	6	0	0	0	0.96322	1	12196	12196		27.882	2.4321	1	17656000			54224	8893	37878	37940	59373	59373					0.11216540462805824
NKSKLYPKT	9	Unmodified	_NKSKLYPKT_					0	0	0			REV__ENSG00000169607|ENST00000302450|CKAP2L	REV__ENSG00000169607|ENST00000302450|CKAP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7872314453125	2	539.816399	1077.61824	-0.47318	-0.00025543	0.15008	8.1018E-05	-0.3231	-0.00017441	539.8162241186699	68.237	0.49759	68.237	67.947	68.444	0					19	12	2	0	0	0	0.024447	1	8203	8203		19.104	1.6355	1	242050	+		54225	26384	37879	37941	59374	59374					0.0825400488570267
NKSKLYPKT	9	Unmodified	_NKSKLYPKT_					0	0	0			REV__ENSG00000169607|ENST00000302450|CKAP2L	REV__ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.816399	1077.61824	-0.32287	-0.00017429	0.84776	0.00045763	0.52489	0.00028334	539.8164929048891	68.328	0.38062	68.347	68.118	68.499	0.018913	0.055126	0.00053561	NaN	13.454	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197260	+		54226	26384	37879	37941							0.0825400488570267
NKSKSGSIGLE	11	Unmodified	_NKSKSGSIGLE_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.27978515625	2	560.303852	1118.59315	0.18657	0.00010454	-2.6989	-0.0015122	-2.5123	-0.0014076	560.804158757631	85.81	0.1694	85.615	85.552	85.721	-0.19508					5	3	2	0	0	0	0.024727	1	10402	10402		20.837	5.9723	1	20530	+		54227	26475	37880	37942	59375	59375					0.03859905292461008
NKSLKQVK	8	Unmodified	_NKSLKQVK_					0	0	0			REV__ENSG00000130741|ENST00000253039|EIF2S3	REV__ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.80853271484375	2	472.798009	943.581465	1.0041	0.00047471	-0.65643	-0.00031036	0.34762	0.00016436	472.79753532693775	19.714	0.34572	19.481	19.275	19.621	-0.23345					9	6	2	0	0	0	0.027866	1	414	414		26.796	0	1	25285	+		54228	23146	37881	37943	59376	59376					0.1074175305980134
NKSLNRNQ	8	Unmodified	_NKSLNRNQ_					0	0	0		nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL	nc|ENSG00000136155|O95171-3|SCEL	nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7740783691406	2	487.262322	972.510091	-0.32215	-0.00015697	-3.0159	-0.0014696	-3.3381	-0.0016265	487.25860186576335	26.991	1.1481	26.823	26.339	27.487	-0.16816					72	26	6	0	0	0	0.027866	1	1499	1499		40.778	0	1	582260			54229	4989	37882	37944	59377	59377					0.022736333551392818
NKSMMLRAR	9	Unmodified	_NKSMMLRAR_					0	0	0		SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant;ENSG00000158352|ENST00000376020|SHROOM4;nc|ENSG00000158352|Q9ULL8-2|SHROOM4	SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	SHROOM4|p.E1110Rfs*71|1|0.72|ENSG00000158352|chrX:50607814-50607814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.7740478515625	2	553.799703	1105.58485	-0.73825	-0.00040884	2.8634	0.0015857	2.1251	0.0011769	553.8015167150753	57.392	0.60479	57.225	57.001	57.606	-0.1672					38	15	4	0	0	0	0.024374	1	6307	6307		25.574	9.9322	1	533910			54230	6664	37883	37945	59378	59378					0.03628356570493452
NKSNTIEPFW	10	Unmodified	_NKSNTIEPFW_					0	0	0		ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.8873291015625	3	412.540022	1234.59824	-0.37197	-0.00015345	-1.0136	-0.00041816	-1.3856	-0.00057161	412.5396505651857	27.108	0.97373	26.866	26.45	27.423	-0.24217					40	22	2	0	0	0	0.03519	1	1543	1543		40.058	1.3046	1	130790			54231	4970	37884	37946	59379	59379					-0.009677908449020833
NKSNTIEPFW	10	Unmodified	_NKSNTIEPFW_					0	0	0		ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	412.540022	1234.59824	-0.32868	-0.00013559	-2.5786	-0.0010638	-2.9072	-0.0011994	412.53898886436576	26.953	0.92896	26.785	26.301	27.23	-0.16816	-0.079624	-4.0024E-05	NaN	66.962	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94542			54232	4970	37884	37946							-0.009677908449020833
NKSNTIEPFW	10	Unmodified	_NKSNTIEPFW_					0	0	0		ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	412.540022	1234.59824	-0.27963	-0.00011536	-3.12	-0.0012871	-3.3996	-0.0014025	412.5391094384247	27.099	0.83982	26.942	26.426	27.266	-0.15664	0.077729	-0.00071013	NaN	66.962	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84611			54233	4970	37884	37946							-0.009677908449020833
NKSPIKSKP	9	Unmodified	_NKSPIKSKP_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7785339355469	2	499.803291	997.59203	-0.19706	-9.8489E-05	0.17825	8.9091E-05	-0.018804	-9.3981E-06	499.80324809888776	69.977	0.43633	69.989	69.668	70.104	0.012421					15	10	2	0	0	0	0.024319	1	8325	8325		47.657	9.8458	1	397070	+		54234	22664	37885	37947	59380	59380					0.09313735714226823
NKSPIKSKP	9	Unmodified	_NKSPIKSKP_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-3|KIAA1549	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.803291	997.59203	0.65711	0.00032842	-0.70482	-0.00035227	-0.047714	-2.3848E-05	499.8027427794938	70.177	0.40671	69.884	69.593	70	-0.29292	-0.010294	-0.00049594	NaN	18.262	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474900	+		54235	22664	37885	37947							0.09313735714226823
NKSPKLSTY	9	Unmodified	_NKSPKLSTY_					0	0	0			REV__ENSG00000188163|ENST00000344774|FAM166A	REV__ENSG00000188163|ENST00000344774|FAM166A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2979736328125	2	519.284931	1036.55531	-0.48115	-0.00024985	0.32687	0.00016974	-0.15428	-8.0117E-05	519.2847243419565	60.608	0.4523	60.354	60.092	60.544	-0.25374					21	10	3	0	0	0	0.024495	1	6726	6726		34.173	0	1	280770	+		54236	28015	37886	37948	59381	59381					0.03849439097666618
NKSRIQLQ	8	Unmodified	_NKSRIQLQ_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.79046630859375	2	493.790715	985.566878	-0.21758	-0.00010744	-0.45434	-0.00022435	-0.67192	-0.00033179	493.79048918912946	24.248	1.1359	24.248	23.694	24.83	0					88	25	5	0	0	0	0.89627	1	1059	1059		51.335	3.6781	1	1251300	+		54237	19816	37887	37949	59382	59382					0.07351680911676794
NKSRKKKPP	9	Unmodified	_NKSRKKKPP_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.843994140625	2	541.843282	1081.67201	2.9624	0.0016052	-3.165	-0.0017149	-0.20262	-0.00010979	541.8414085075843	17.606	0.44611	17.606	17.3	17.746	0					17	8	3	0	0	0	0.97973	1	183	183		24.519	0.31644	1	97645			54238	9758	37888	37950	59383	59383					0.13444222108091708
NKSSQLVTF	9	Unmodified	_NKSSQLVTF_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15;TMPRSS15|p.C354Lfs*9|1|0.24|ENSG00000154646|chr21:18353013-18353014|-/A|frameshift_variant	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2803039550781	2	512.277106	1022.53966	0.020523	1.0514E-05	-0.25229	-0.00012924	-0.23177	-0.00011873	512.2769015378315	61.326	0.90842	61.326	61.032	61.941	0					40	23	2	0	0	0	0.024405	1	7107	7107		53.351	27.901	1	2219000			54239	6423	37889	37951	59384	59384					0.0292915258062294
NKSSQLVTF	9	Unmodified	_NKSSQLVTF_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15;TMPRSS15|p.C354Lfs*9|1|0.24|ENSG00000154646|chr21:18353013-18353014|-/A|frameshift_variant	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.28106689453125	2	512.277106	1022.53966	-0.047791	-2.4482E-05	0.13074	6.6974E-05	0.082946	4.2491E-05	512.2770801460174	61.223	0.82513	61.294	61.095	61.92	0.071125					32	21	2	0	0	0	0.024354	1	7001	7001		38.806	5.9937	1	2213200			54240	6423	37889	37951	59385	59385					0.0292915258062294
NKSTDSPVDA	10	Unmodified	_NKSTDSPVDA_					0	0	0			REV__ENST00000492632.5_1_20:9288449-9449247:+|nuORF;REV__ENST00000464199.5_1_20:9351789-9459633:+|nuORF	REV__ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2826538085938	2	517.24346	1032.47237	0.23377	0.00012091	3.7352	0.001932	3.969	0.0020529	517.7460437675355	49.381	0.11223	49.381	49.324	49.437	0					4	2	2	0	0	0	0.03519	1	5092	5092		27.882	11.409	1	38356	+		54241	21218;32965	37890	37952	59386	59386					-0.04256922420995579
NKSTIYQQV	9	Unmodified	_NKSTIYQQV_					0	0	0			REV__ENST00000469543.5_1_10:17278370-17279385:+|nuORF	REV__ENST00000469543.5_1_10:17278370-17279385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.7881469726562	2	540.787838	1079.56112	-0.89353	-0.00048321	0.5095	0.00027553	-0.38403	-0.00020768	540.7879632465316	46.759	1.1329	46.606	46.309	47.441	-0.15301					74	30	4	0	0	0	0.23085	2	4634	4621;4634		84.916	7.5979	1	4258300	+		54242	33130	37891	37953	59387;59388	59388					0.024525376093151863
NKTKMAFLL	9	Unmodified	_NKTKMAFLL_					0	0	0		nc|ENSG00000205359|Q86UG4-3|SLCO6A1;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7888793945312	2	533.309895	1064.60524	-0.40465	-0.0002158	0.4194	0.00022367	0.014745	7.8634E-06	533.3101116896281	77.317	1.1599	77.317	77.082	78.242	0					39	27	2	0	0	0	0.023635	1	9660	9660		66.429	8.618	1	130100			54243	10423	37892	37954	59389	59389					0.07551850501954505
NKTKMAFLL	9	Unmodified	_NKTKMAFLL_					0	0	0		nc|ENSG00000205359|Q86UG4-3|SLCO6A1;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.309895	1064.60524	-0.21886	-0.00011672	0.19989	0.0001066	-0.018974	-1.0119E-05	533.3097862806794	77.447	0.75018	77.236	76.995	77.745	-0.21087	-0.040826	-8.8797E-05	NaN	66.429	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144230			54244	10423	37892	37954							0.07551850501954505
NKTKPYIQV	9	Unmodified	_NKTKPYIQV_					0	0	0		HSPA5|p.K122N|1|0.12|ENSG00000044574|chr9:125240298-125240298|C/G|missense_variant	HSPA5|p.K122N|1|0.12|ENSG00000044574|chr9:125240298-125240298|C/G|missense_variant	HSPA5|p.K122N|1|0.12|ENSG00000044574|chr9:125240298-125240298|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.781982421875	2	545.816399	1089.61824	-0.90616	-0.0004946	4.2918	0.0023425	3.3856	0.0018479	545.818661679291	75.355	0.78963	75.11	74.757	75.547	-0.24455					54	20	3	0	0	0	0.024427	1	9261	9261		26.693	0	1	1765000			54245	17752	37893	37955	59390	59390					0.0770200488568662
NKTLLFEVIE	10	Unmodified	_NKTLLFEVIE_					0	0	0			REV__nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	REV__nc|ENSG00000163046|A7E2S9-2|ANKRD30BL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.2127380371094	3	402.564056	1204.67034	-0.038457	-1.5482E-05	1.8424	0.00074167	1.8039	0.00072619	402.5647234259071	56.677	0.7478	56.452	55.99	56.738	-0.2248					42	18	3	0	0	0	0.03519	1	6156	6156		23.378	14.971	1	1260500	+		54246	25526	37894	37956	59391	59391					0.07619123508811754
NKTLRTKN	8	Unmodified	_NKTLRTKN_					0	0	0			REV__ENSG00000111962|ENST00000367463|UST	REV__ENSG00000111962|ENST00000367463|UST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.790771484375	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.95679	2	10542	10443;10542		44.117	29.15	1	2003200	+		54247	21960	37895	37957	59392;59393	59393					0.0790368091164737
NKTLRTKN	8	Unmodified	_NKTLRTKN_					0	0	0			REV__ENSG00000111962|ENST00000367463|UST	REV__ENSG00000111962|ENST00000367463|UST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7906188964844	2	487.790715	973.566878	0.37956	0.00018514	-0.58277	-0.00028427	-0.20321	-9.9126E-05	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.0284	1	10039	10039		32.812	2.9709	1	2659000	+		54248	21960	37895	37957	59394	59394					0.0790368091164737
NKTLRTKN	8	Unmodified	_NKTLRTKN_					0	0	0			REV__ENSG00000111962|ENST00000367463|UST	REV__ENSG00000111962|ENST00000367463|UST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7906799316406	2	487.790715	973.566878	0.33726	0.00016451	-0.60673	-0.00029596	-0.26947	-0.00013144	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0574	1	10092	10092		27.882	3.3782	1	1999500	+		54249	21960	37895	37957	59395	59395					0.0790368091164737
NKTMKMRI	8	Unmodified	_NKTMKMRI_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3165283203125	2	511.285897	1020.55724	-1.0009	-0.00051176	3.5907	0.0018359	2.5898	0.0013241	511.7894786967418	22.742	1.6477	22.815	22.172	23.82	0.073954					87	36	4	0	0	0	0.027866	1	737	737		55.504	11.387	1	482900	+		54250	34932	37896	37958	59396	59396					0.0477845331026856
NKTNLLYSYP	10	Unmodified	_NKTNLLYSYP_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.8191528320312	2	606.816596	1211.61864	-0.42065	-0.00025526	3.7797	0.0022936	3.359	0.0020383	606.8188401901533	101.53	1.2955	101.54	101.25	102.55	0.0090332					79	29	4	0	0	0	1.0719	1	13016	13016		36.447	0.82846	1	3240800			54251	9743	37897	37959	59397	59397					0.02129379814891763
NKTQLLSHAN	10	Unmodified	_NKTQLLSHAN_					0	0	0			REV__ENSG00000081087|ENST00000193322|OSTM1	REV__ENSG00000081087|ENST00000193322|OSTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2802734375	2	563.304187	1124.59382	-1.0306	-0.00058054	-3.7213	-0.0020962	-4.7519	-0.0026768	563.3022012479702	37.972	0.38687	37.753	37.571	37.957	-0.21849					19	10	3	0	0	0	0.03519	1	3058	3058		18.262	0	1	175100	+		54252	20673	37898	37960	59398	59398					0.036507447321810105
NKTRIIYF	8	Unmodified	_NKTRIIYF_					0	0	0		CBLN4|p.D96A|1|0.15|ENSG00000054803|chr20:56003885-56003885|T/G|missense_variant;ENSG00000054803|ENST00000064571|CBLN4	CBLN4|p.D96A|1|0.15|ENSG00000054803|chr20:56003885-56003885|T/G|missense_variant	CBLN4|p.D96A|1|0.15|ENSG00000054803|chr20:56003885-56003885|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2642822265625	2	527.805834	1053.59712	-1.2003	-0.00063351	-0.83812	-0.00044236	-2.0384	-0.0010759	527.8050024003356	48.443	0.62164	48.443	48.277	48.899	0					25	17	2	0	0	0	0.027866	1	4929	4929		26.796	0	1	181360			54253	221	37899	37961	59399	59399					0.07246039576853036
NKTRIIYF	8	Unmodified	_NKTRIIYF_					0	0	0		CBLN4|p.D96A|1|0.15|ENSG00000054803|chr20:56003885-56003885|T/G|missense_variant;ENSG00000054803|ENST00000064571|CBLN4	CBLN4|p.D96A|1|0.15|ENSG00000054803|chr20:56003885-56003885|T/G|missense_variant	CBLN4|p.D96A|1|0.15|ENSG00000054803|chr20:56003885-56003885|T/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.805834	1053.59712	-1.2132	-0.00064032	-2.8322	-0.0014948	-4.0453	-0.0021352	527.8040129999349	48.727	0.32196	48.447	48.253	48.575	-0.27977	-0.0058145	-0.0013096	NaN	26.796	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72136			54254	221	37899	37961							0.07246039576853036
NKTVTMLDT	9	Unmodified	_NKTVTMLDT_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.8083190917969	2	511.762975	1021.5114	-0.61565	-0.00031507	-0.3055	-0.00015634	-0.92115	-0.00047141	511.7629122777396	21.931	1.2503	21.729	21.08	22.33	-0.20199					37	25	2	0	0	0	0.024209	1	727	727		56.721	0	1	44709	+		54255	27033	37900	37962	59400	59400					0.0015008660899411552
NKVAISTT	8	Unmodified	_NKVAISTT_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.2391662597656	2	417.239993	832.465432	0.69179	0.00028864	-2.5084	-0.0010466	-1.8166	-0.00075797	417.23885776731845	87.824	1.3614	87.789	87.405	88.766	-0.035355					56	32	2	0	0	0	0.99042	1	11020	11020		38.806	0	1	3093200			54256	1807	37901	37963	59401	59401					0.04249809489078871
NKVAISTT	8	Unmodified	_NKVAISTT_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.2393493652344	2	417.239993	832.465432	-0.34005	-0.00014188	-1.5712	-0.00065558	-1.9113	-0.00079746	417.2392593971876	87.93	0.84181	87.751	87.405	88.247	-0.17875					38	20	2	0	0	0	1.0516	1	10689	10689		29.15	1.2673	1	2391200			54257	1807	37901	37963	59402	59402					0.04249809489078871
NKVAIVDDP	9	Unmodified	_NKVAIVDDP_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.763832	969.513111	-0.99881	-0.00048519	1.0002	0.00048588	0.001423	6.9123E-07	485.76421865014913	40.497	0.38815	40.52	40.275	40.663	0.023006					18	10	2	0	0	0	0.024323	1	3472	3472		44.117	0	1	883280			54258	9819	37902	37964	59403	59403					0.027134636892697017
NKVCLAAATP	10	Unmodified	_NKVCLAAATP_					0	0	0		ENST00000483128.1_1_19:51214585-51217198:-|nuORF	ENST00000483128.1_1_19:51214585-51217198:-|nuORF	ENST00000483128.1_1_19:51214585-51217198:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2663269042969	2	494.268227	986.521901	-0.22677	-0.00011209	-3.1857	-0.0015746	-3.4125	-0.0016867	494.2662711553679	49.246	0.53587	49.093	48.792	49.328	-0.15277					21	14	2	0	0	0	0.03519	1	5014	5014		47.657	3.1263	1	314630			54259	15277	37903	37965	59404	59404					0.02810114054091173
NKVENLLW	8	Unmodified	_NKVENLLW_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1;RFC1|p.E578Q|1|0.17|ENSG00000035928|chr4:39308789-39308789|C/G|missense_variant	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2950744628906	2	508.282192	1014.54983	-0.9102	-0.00046264	-2.156	-0.0010958	-3.0662	-0.0015585	508.28102164284127	21.586	0.6237	21.586	21.244	21.868	0					19	12	2	0	0	0	0.027866	1	645	645		37.028	7.8789	1	35061			54260	1037	37904	37966	59405	59405					0.04313760305853975
NKVFLSLIF	9	Unmodified	_NKVFLSLIF_					0	0	0		ENST00000521747.5_1_7:11013513-11013678:+|nuORF	ENST00000521747.5_1_7:11013513-11013678:+|nuORF	ENST00000521747.5_1_7:11013513-11013678:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8250732421875	2	540.826235	1079.63792	-1.6086	-0.00086999	2.0191	0.001092	0.41047	0.00022199	540.8266864944628	91.1	1.0508	90.951	90.691	91.742	-0.1487					59	24	4	0	0	0	0.27161	1	11153	11153		79.451	2.6769	1	720890			54261	16011	37905	37967	59406	59406					0.10128380896458111
NKVFLSLIF	9	Unmodified	_NKVFLSLIF_					0	0	0		ENST00000521747.5_1_7:11013513-11013678:+|nuORF	ENST00000521747.5_1_7:11013513-11013678:+|nuORF	ENST00000521747.5_1_7:11013513-11013678:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.8259887695312	2	540.826235	1079.63792	-0.80994	-0.00043804	0.494	0.00026717	-0.31594	-0.00017087	540.8263261751827	91.097	1.0884	90.974	90.714	91.802	-0.12341					44	25	3	0	0	0	0.072054	1	11166	11166		120.62	38.316	1	863730			54262	16011	37905	37967	59407	59407					0.10128380896458111
NKVFLSLIF	9	Unmodified	_NKVFLSLIF_					0	0	0		ENST00000521747.5_1_7:11013513-11013678:+|nuORF	ENST00000521747.5_1_7:11013513-11013678:+|nuORF	ENST00000521747.5_1_7:11013513-11013678:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	540.826235	1079.63792	-0.59281	-0.00032061	0.93637	0.00050642	0.34356	0.00018581	540.8261442175414	91.166	0.96547	91.027	90.784	91.75	-0.13942	0.042895	0.00032796	NaN	120.62	68	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	880310			54263	16011	37905	37967							0.10128380896458111
NKVGRFSVS	9	Unmodified	_NKVGRFSVS_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2799377441406	2	497.277441	992.540328	-0.50033	-0.0002488	0.29411	0.00014625	-0.20622	-0.00010255	497.27755893025915	22.221	0.79174	22.036	21.715	22.507	-0.18539					32	16	3	0	0	0	0.80658	1	769	769		38.806	1.647	1	416870			54264	18053	37906	37968	59408	59408					0.04375992020334252
NKVIAGIVLI	10	Unmodified	_NKVIAGIVLI_					0	0	0			REV__ENSG00000176136|ENST00000589410|MC5R	REV__ENSG00000176136|ENST00000589410|MC5R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2692260742188	2	520.347335	1038.68012	-0.56137	-0.00029211	0.28039	0.0001459	-0.28098	-0.00014621	520.3472629191627	75.66	1.1504	75.415	75.153	76.303	-0.24455					46	30	3	0	0	0	0.03519	1	9228	9228		53.351	2.016	1	532120	+		54265	26996	37907	37969	59409	59409					0.1623235630486306
NKVIEIVGLA	10	Unmodified	_NKVIEIVGLA_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.3262939453125	2	528.326599	1054.63865	-0.12806	-6.7658E-05	-0.69507	-0.00036722	-0.82313	-0.00043488	528.326114244234	66.032	1.1741	66.062	65.774	66.948	0.030098					72	32	5	0	0	0	0.40067	1	7776	7776		98.629	13.27	1	12478000			54266	9961	37908	37970	59410	59410					0.11351175545541992
NKVIEIYLD	9	Unmodified	_NKVIEIYLD_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7669677734375	2	553.808239	1105.60193	-0.37699	-0.00020878	-0.28512	-0.0001579	-0.66211	-0.00036668	553.8078679221685	53.083	0.76118	53.178	52.868	53.629	0.095669					56	20	4	0	0	0	0.024292	1	5648	5648		58.782	15.918	1	2945700	+		54267	23505	37909	37971	59411	59411					0.05334878928942999
NKVKKARR	8	Unmodified	_NKVKKARR_					0	0	0		NLRP14|p.E49K|1|0.1|ENSG00000158077|chr11:7038731-7038731|G/A|missense_variant	NLRP14|p.E49K|1|0.1|ENSG00000158077|chr11:7038731-7038731|G/A|missense_variant	NLRP14|p.E49K|1|0.1|ENSG00000158077|chr11:7038731-7038731|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.2882080078125	2	500.330342	998.646131	-1.001	-0.00050082	2.9115	0.0014567	1.9105	0.00095589	500.33166257997703	24.145	0.26357	24.098	23.913	24.177	-0.047146					8	5	2	0	0	0	0.027866	1	991	991		19.36	5.5846	1	39620			54268	18876	37910	37972	59412	59412					0.1467537265646115
NKVLLRVR	8	Unmodified	_NKVLLRVR_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000124177|Q8TD26-3|CHD6;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3130798339844	2	499.335093	996.655633	-0.19498	-9.7358E-05	2.234	0.0011155	2.039	0.0010181	499.3363395219152	77.757	0.41303	77.773	77.492	77.905	0.015907					12	9	2	0	0	0	0.027866	1	9518	9518		12.959	0	1	72774			54269	18544;4017;2254	37911	37973	59413	59413					0.15717140941990237
NKVLVPVVQ	9	Unmodified	_NKVLVPVVQ_					0	0	0			REV__nc|ENSG00000103222|P33527-6|ABCC1	REV__nc|ENSG00000103222|P33527-6|ABCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.2349548339844	2	498.316035	994.617516	0.24704	0.00012311	-1.2043	-0.0006001	-0.95722	-0.000477	498.3152017653925	56.93	0.40611	56.728	56.52	56.926	-0.20209					16	10	2	0	0	0	0.024436	1	6209	6209		16.473	0	1	163060	+		54270	21366	37912	37974	59414	59414					0.11999210236660929
NKVMESILL	9	Oxidation (M)	_NKVM(Oxidation (M))ESILL_		NKVM(1)ESILL		NKVM(120)ESILL	0	0	1		ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7984619140625	2	531.796817	1061.57908	-0.1908	-0.00010147	3.9123	0.0020805	3.7215	0.0019791	531.7987709344908	98.974	1.2634	98.984	98.48	99.743	0.010231					82	28	4	0	0	0	0.072054	2	12615	12615;12641		120.62	10.284	1	3036200			54271	9054	37913	37975	59415;59416	59415		379			0.05075536539834502
NKVMESILL	9	Oxidation (M)	_NKVM(Oxidation (M))ESILL_		NKVM(1)ESILL		NKVM(130)ESILL	0	0	1		ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7761840820312	2	531.796817	1061.57908	-0.72967	-0.00038803	-3.2014	-0.0017025	-3.9311	-0.0020905	531.7949880029134	82.639	0.89926	82.665	82.316	83.215	0.026253					43	20	3	0	0	0	0.016258	1	10264	10264		129.68	18.034	1	312750			54272	9054	37913	37975	59417	59417		379			0.05075536539834502
NKVMESILL	9	Oxidation (M)	_NKVM(Oxidation (M))ESILL_					0	0	1		ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.796817	1061.57908	0.38111	0.00020268	-4.8708	-0.0025903	-4.4897	-0.0023876	531.7937614515893	82.747	0.60805	82.527	82.173	82.781	-0.22015	-0.11756	-0.0013665	NaN	129.68	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120970			54273	9054	37913	37975				379			0.05075536539834502
NKVMESILL	9	Oxidation (M)	_NKVM(Oxidation (M))ESILL_					0	0	1		ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.796817	1061.57908	-0.23595	-0.00012548	-4.3994	-0.0023396	-4.6354	-0.0024651	531.794225172754	82.809	0.47754	82.628	82.287	82.765	-0.18079	-0.016271	-0.00086518	NaN	129.68	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97832			54274	9054	37913	37975				379			0.05075536539834502
NKVMESILL	9	Oxidation (M)	_NKVM(Oxidation (M))ESILL_					0	0	1		ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.796817	1061.57908	-0.64026	-0.00034049	-3.0926	-0.0016446	-3.7328	-0.0019851	531.7949480085877	82.66	0.73462	82.52	82.216	82.951	-0.14014	-0.12419	0.00052479	NaN	129.68	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109550			54275	9054	37913	37975				379			0.05075536539834502
NKVMNPNL	8	Unmodified	_NKVMNPNL_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2568054199219	2	465.247295	928.480036	-0.43984	-0.00020463	-1.7301	-0.00080493	-2.17	-0.0010096	465.2459563274455	54.719	0.59042	54.719	54.591	55.182	0					25	16	2	0	0	0	0.027866	1	5987	5987		24.203	6.8378	1	108420	+		54276	27338	37914	37976	59418	59418					0.012935583655803384
NKVNLIEML	9	Oxidation (M)	_NKVNLIEM(Oxidation (M))L_		NKVNLIEM(1)L		NKVNLIEM(57)L	0	0	1			REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2999267578125	2	545.302267	1088.58998	-0.17072	-9.3096E-05	-3.266	-0.001781	-3.4367	-0.0018741	545.3004537677916	74.486	0.64048	74.211	73.917	74.558	-0.27573					35	14	3	0	0	0	0.53979	1	8775	8775		56.721	10.749	1	1406600	+		54277	24929	37915	37977	59419	59419		738			0.049229389141146385
NKVNLIEML	9	Oxidation (M)	_NKVNLIEM(Oxidation (M))L_					0	0	1			REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	545.302267	1088.58998	1.2301	0.00067078	-3.8904	-0.0021214	-2.6603	-0.0014507	545.2999878736647	74.25	1.2032	74.25	73.913	75.116	0	0.027737	-0.0012202	NaN	56.721	57	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152100	+		54278	24929	37915	37977				738			0.049229389141146385
NKVNLIEML	9	Oxidation (M)	_NKVNLIEM(Oxidation (M))L_					0	0	1			REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.302267	1088.58998	-0.26519	-0.00014461	-2.7503	-0.0014997	-3.0155	-0.0016443	545.3005584850383	74.554	0.79935	74.295	73.944	74.743	-0.25887	0.073046	2.3174E-05	NaN	56.721	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1190600	+		54279	24929	37915	37977				738			0.049229389141146385
NKVNLIEML	9	Oxidation (M)	_NKVNLIEM(Oxidation (M))L_					0	0	1			REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	545.302267	1088.58998	-1.314	-0.00071655	-1.5397	-0.00083959	-2.8537	-0.0015561	545.3013135123257	74.277	0.92776	74.287	73.967	74.895	0.0096512	0.064918	0.0013435	NaN	56.721	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1148800	+		54280	24929	37915	37977				738			0.049229389141146385
NKVNLIEML	9	Oxidation (M)	_NKVNLIEM(Oxidation (M))L_					0	0	1			REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.302267	1088.58998	-0.00428	-2.3339E-06	-3.2032	-0.0017467	-3.2075	-0.001749	545.3003592911872	74.269	0.85447	74.086	73.827	74.682	-0.18278	-0.13575	-0.00047075	NaN	56.721	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100300	+		54281	24929	37915	37977				738			0.049229389141146385
NKVNRSNKV	9	Unmodified	_NKVNRSNKV_					0	0	0			REV__ENST00000359788.8_1_19:23835902-23836025:-|nuORF	REV__ENST00000359788.8_1_19:23835902-23836025:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7632446289062	2	529.806897	1057.59924	0.29229	0.00015486	-0.50067	-0.00026526	-0.20838	-0.0001104	530.3084301332166	82.113	0.12867	81.884	81.777	81.905	-0.2289					4	2	2	0	0	0	0.024541	1	9871	9871		23.042	0	1	35950	+		54282	30889	37916	37978	59420	59420					0.07274468314653859
NKVPRKEL	8	Unmodified	_NKVPRKEL_					0	0	0		ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.78521728515625	2	492.303458	982.592364	0.19687	9.692E-05	3.1326	0.0015422	3.3295	0.0016391	492.3049826064664	78.732	1.1591	78.54	78.096	79.255	-0.1921					52	27	4	0	0	0	0.027866	1	9675	9675		47.916	0	1	195420			54283	7400	37917	37979	59421	59421					0.10037155434076794
NKVQQAHII	9	Unmodified	_NKVQQAHII_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.8067016601562	2	525.806365	1049.59818	-0.60158	-0.00031631	-0.057346	-3.0153E-05	-0.65892	-0.00034647	525.8062687834562	46.726	0.55651	46.726	46.447	47.003	0					48	14	4	0	0	0	0.22754	1	4648	4648		85.359	3.119	1	2321600	+		54284	27537	37918	37980	59422	59422					0.07536253945750104
NKVQQAHII	9	Unmodified	_NKVQQAHII_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	525.806365	1049.59818	-0.60158	-0.00031631	-0.057346	-3.0153E-05	-0.65892	-0.00034647	525.8062687834562	46.726	0.55651	46.726	46.447	47.003	0	-0.0086011	8.4378E-05	NaN	85.359	48	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2321600	+		54285	27537	37918	37980							0.07536253945750104
NKVQQAHII	9	Unmodified	_NKVQQAHII_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	525.806365	1049.59818	-0.45981	-0.00024177	0.030631	1.6106E-05	-0.42918	-0.00022566	525.8062749114689	46.872	0.56812	46.719	46.41	46.978	-0.15301	-0.01608	0.0001769	NaN	85.359	48	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2126300	+		54286	27537	37918	37980							0.07536253945750104
NKVQQAHII	9	Unmodified	_NKVQQAHII_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	525.806365	1049.59818	-0.052515	-2.7612E-05	-0.43559	-0.00022904	-0.4881	-0.00025665	525.806077861201	46.708	0.58297	46.759	46.441	47.024	0.051395	0.024681	-0.00031339	NaN	85.359	47	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2199000	+		54287	27537	37918	37980							0.07536253945750104
NKVQSQIL	8	Unmodified	_NKVQSQIL_					0	0	0			REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.25665283203125	2	465.274367	928.53418	1.0725	0.00049902	2.4381	0.0011344	3.5106	0.0016334	465.2752703034474	58.923	0.64997	59.008	58.776	59.426	0.085686					51	17	4	0	0	0	0.027866	1	6669	6669		73.975	19.21	1	2544200	+		54288	36826	37919	37981	59423	59423					0.06705473788815652
NKVRFCLVA	9	Unmodified	_NKVRFCLVA_					0	0	0			REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2	REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.7567138671875	2	525.299862	1048.58517	-0.395	-0.00020749	4.2288	0.0022214	3.8338	0.0020139	525.8029916698235	34.916	0.52231	34.704	34.441	34.963	-0.21226					20	12	2	0	0	0	0.024541	1	2596	2596		11.511	7.8267	1	137940	+		54289	25113	37920	37982	59424	59424					0.06282099562008625
NKVRKCFIK	9	Unmodified	_NKVRKCFIK_					0	0	0			REV__ENST00000371144.7_1_X:123197851-123199774:+|nuORF	REV__ENST00000371144.7_1_X:123197851-123199774:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.2764892578125	2	568.342061	1134.66957	-1.6078	-0.00091379	-0.37843	-0.00021508	-1.9862	-0.0011289	568.340533714229	80.618	0.20782	80.64	80.486	80.694	0.021866					6	4	2	0	0	0	0.02435	1	9925	9925		42.396	8.2236	1	27920	+		54290	31150	37921	37983	59425	59425					0.10762050378752974
NKVRLKKP	8	Unmodified	_NKVRLKKP_					0	0	0			REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000165905|ENST00000401752|LARGE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.82965087890625	2	491.829643	981.644734	-1.1272	-0.00055441	0.93504	0.00045988	-0.1922	-9.453E-05	491.8300297099961	26.132	1.2402	25.896	25.467	26.707	-0.23603					82	32	4	0	0	0	1.0338	1	1297	1297		31.955	1.4512	1	5995500	+		54291	25944;23372	37922	37984	59426	59426					0.1531773856769405
NKVTKSFPP	9	Unmodified	_NKVTKSFPP_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.82708740234375	2	509.290017	1016.56548	-1.3708	-0.00069815	1.0667	0.00054327	-0.3041	-0.00015488	509.29055595015444	40.888	0.50752	40.658	40.378	40.886	-0.23029					23	13	2	0	0	0	0.024374	1	3544	3544		32.812	0	1	219940			54292	10867	37923	37985	59427	59427					0.05786046822890967
NKVVLFSLD	9	Unmodified	_NKVVLFSLD_					0	0	0			REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8146362304688	2	517.797675	1033.5808	0.48856	0.00025298	-1.2506	-0.00064757	-0.76206	-0.00039459	517.7969407456723	59.052	1.5432	59.052	58.75	60.294	0					66	41	2	0	0	0	0.024405	1	6917	6917		44.117	5.3107	1	2797000	+		54293	25733	37924	37986	59428	59428					0.06534913620089355
NKVVLFSLD	9	Unmodified	_NKVVLFSLD_					0	0	0			REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.797675	1033.5808	-0.087709	-4.5415E-05	-0.6716	-0.00034775	-0.7593	-0.00039317	517.7971849245388	58.924	0.83711	59.009	58.703	59.54	0.085682	-0.049064	0.00066534	NaN	44.117	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2205100	+		54294	25733	37924	37986							0.06534913620089355
NKVYKNLKE	9	Unmodified	_NKVYKNLKE_					0	0	0		nc|ENSG00000163072|Q8IVI9-4|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN	nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2828369140625	2	568.327131	1134.63971	-0.77214	-0.00043883	2.8533	0.0016216	2.0811	0.0011828	568.3287364444152	82.064	0.73051	81.924	81.486	82.216	-0.14014					36	16	3	0	0	0	0.024427	1	9817	9817		19.997	3.5236	1	204480			54295	18440	37925	37987	59429	59429					0.07777389914417654
NKWERPKKPVQ	11	Unmodified	_NKWERPKKPVQ_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.2979736328125	3	470.605249	1408.79392	-0.82166	-0.00038668	0.84761	0.00039889	0.02595	1.2212E-05	470.60561303036076	32.921	0.48057	32.755	32.597	33.077	-0.16565					19	11	2	0	0	0	0.024789	1	2280	2280		26.75	8.2187	1	121520	+		54296	33096	37926	37988	59430	59430					0.10587219399781134
NKWERPKKPVQ	11	Unmodified	_NKWERPKKPVQ_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	470.605249	1408.79392	-0.30327	-0.00014272	0.60343	0.00028398	0.30016	0.00014126	470.6054481788289	33.067	0.45259	33.067	32.903	33.356	0	0.20951	0.00063942	NaN	21.032	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55720	+		54297	33096	37926	37988							0.10587219399781134
NKWERPKKPVQ	11	Unmodified	_NKWERPKKPVQ_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	470.605249	1408.79392	0.75663	0.00035607	-1.2231	-0.00057559	-0.46646	-0.00021952	470.60454099062076	32.781	0.23532	32.844	32.766	33.002	0.062885	-0.013032	-0.0019393	NaN	21.032	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38703	+		54298	33096	37926	37988							0.10587219399781134
NKWFIILC	8	Unmodified	_NKWFIILC_					0	0	0			REV__ENST00000317135.12_1_X:114347849-114357100:-|nuORF	REV__ENST00000317135.12_1_X:114347849-114357100:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7703857421875	2	518.786056	1035.55756	-1.2821	-0.00066515	-2.2383	-0.0011612	-3.5204	-0.0018263	518.7847384933159	35.79	0.99365	35.79	35.235	36.229	0					39	26	2	0	0	0	0.027866	1	2793	2793		26.796	0	1	251190	+		54299	30292	37927	37989	59431	59431					0.041201963018011156
NKWRKEKY	8	Unmodified	_NKWRKEKY_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.7847900390625	2	576.31964	1150.62473	-0.98893	-0.00056994	0.99722	0.00057472	0.0082939	4.78E-06	576.3200913737116	61.125	0.72029	60.872	60.584	61.304	-0.25373					22	17	2	0	0	0	0.027866	1	6788	6788		26.796	10.079	1	162310	+		54300	31462	37928	37990	59432	59432					0.055439428370846144
NKWRSANIY	9	Unmodified	_NKWRSANIY_					0	0	0			REV__ENST00000504986.5_1_4:41956263-41956386:+|nuORF	REV__ENST00000504986.5_1_4:41956263-41956386:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.7847900390625	2	576.301447	1150.58834	-1.0641	-0.00061326	-0.70892	-0.00040855	-1.773	-0.0010218	576.3012766650043	61.062	0.38758	60.809	60.584	60.971	-0.25374					15	9	2	0	0	0	0.024436	1	6788	6788		38.806	9.6361	1	214830	+		54301	33996	37929	37991	59433	59433					0.019070659403723766
NKWYKYNHDL	10	Unmodified	_NKWYKYNHDL_					0	0	0		ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7740173339844	3	460.894688	1379.66223	0.62453	0.00028784	2.7841	0.0012832	3.4086	0.001571	461.2301429057129	24.178	0.54685	24.256	24.138	24.685	0.078346					13	11	2	0	0	0	0.03519	1	967	967		24.232	2.4514	1	85319			54302	4814	37930	37992	59434	59434					-0.012410106879769955
NKYGIRLRA	9	Unmodified	_NKYGIRLRA_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.781982421875	2	545.827632	1089.64071	-1.0474	-0.00057172	2.9248	0.0015965	1.8774	0.0010247	545.8290350578355	75.922	1.2656	75.678	75.409	76.674	-0.24455					70	32	3	0	0	0	0.024354	1	9261	9261		30.504	0	1	2030800			54303	9849	37931	37993	59435	59435					0.09947649073978937
NKYIEAMID	9	Unmodified	_NKYIEAMID_					0	0	0			REV__ENSG00000164733|ENST00000353047|CTSB	REV__ENSG00000164733|ENST00000353047|CTSB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.8135375976562	2	548.7708	1095.52705	-0.67329	-0.00036948	0.10664	5.8519E-05	-0.56666	-0.00031096	548.7705172941359	56.924	0.88666	56.924	56.497	57.384	0					52	24	3	0	0	0	0.024381	1	6340	6340		37.159	8.0096	1	2063600	+		54304	25796	37932	37994	59436	59436					-0.01689626873940142
NKYMWFSPIIM	11	Unmodified	_NKYMWFSPIIM_					0	0	0			REV__ENST00000342166.9_1_2:32249109-32249181:-|nuORF	REV__ENST00000342166.9_1_2:32249109-32249181:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.802734375	3	477.23841	1428.6934	-1.0374	-0.00049509	1.7337	0.00082741	0.69633	0.00033232	477.57396820833566	33.595	0.47587	33.429	33.156	33.632	-0.16565					21	11	3	0	0	0	0.024834	1	2400	2400		17.833	3.1395	1	55020	+		54305	30644	37933	37995	59437	59437					-0.003798969697299981
NKYRISNI	8	Unmodified	_NKYRISNI_					0	0	0		ENSG00000167693|ENST00000336868|NXN;ENST00000575171.1_1_17:729096-882585:-|nuORF;nc|ENSG00000167693|Q6DKJ4-2|NXN;ENST00000575455.5_1_17:722628-800182:-|nuORF;nc|ENSG00000167693|Q6DKJ4-3|NXN	ENSG00000167693|ENST00000336868|NXN	ENSG00000167693|ENST00000336868|NXN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7608337402344	2	504.285266	1006.55598	-0.3688	-0.00018598	-1.8409	-0.00092831	-2.2097	-0.0011143	504.2844821759113	65.282	0.40574	65.048	64.849	65.255	-0.2345					14	9	2	0	0	0	0.027866	1	7455	7455		71.296	4.8664	1	85105			54306	7723	37934	37996	59438	59438					0.052962785373551924
NKYVDMAFD	9	Unmodified	_NKYVDMAFD_					0	0	0			REV__ENST00000518442.5_1_8:109247181-109261015:-|nuORF	REV__ENST00000518442.5_1_8:109247181-109261015:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3143920898438	2	551.747324	1101.4801	-0.11042	-6.0926E-05	2.3971	0.0013226	2.2867	0.0012617	551.7481569047924	72.888	0.42535	72.623	72.469	72.894	-0.26479					19	9	3	0	0	0	0.024487	1	8547	8547		24.203	1.1603	1	120240	+		54307	34234	37935	37997	59439	59439					-0.06658486425089905
NKYVVIIA	8	Unmodified	_NKYVVIIA_					0	0	0		ENSG00000163464|ENST00000295683|CXCR1	ENSG00000163464|ENST00000295683|CXCR1	ENSG00000163464|ENST00000295683|CXCR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.2834167480469	2	460.284203	918.553853	-1.1723	-0.0005396	0.85279	0.00039253	-0.31952	-0.00014707	460.284367401358	65.538	1.8501	65.325	64.528	66.378	-0.21328					119	45	4	0	0	0	0.75307	1	7475	7475		62.978	7.4742	1	2954800			54308	7080	37936	37998	59440	59440					0.09131849799564407
NLAAWSPLPT	10	Unmodified	_NLAAWSPLPT_					0	0	0			REV__ENSG00000106266|ENST00000222990|SNX8	REV__ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.343505859375	2	535.287474	1068.5604	-0.21434	-0.00011473	-0.24506	-0.00013118	-0.4594	-0.00024591	535.2872192110366	75.63	0.99728	75.641	75.326	76.323	0.010376					46	21	3	0	0	0	0.03519	1	9319	9319		41.427	31.721	1	1215100	+		54309	21605	37937	37999	59441	59441					0.028857429602794582
NLADHLPTI	9	Unmodified	_NLADHLPTI_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2718811035156	2	497.271824	992.529095	0.18281	9.0905E-05	-0.49967	-0.00024847	-0.31686	-0.00015756	497.2714833809503	52.773	1.5077	52.626	51.985	53.493	-0.14723					96	39	4	0	0	0	0.56934	1	5623	5623		54.776	1.8396	1	6714200	+		54310	25363	37938	38000	59442	59442					0.032531699261767244
NLAECPLPD	9	Unmodified	_NLAECPLPD_					0	0	0		nc|ENSG00000205022|A6NDY0-2|PABPN1L;nc|ENSG00000205022|A6NDY0-3|PABPN1L;ENSG00000205022|ENST00000419291|PABPN1L;nc|ENSG00000205022|A6NDY0-4|PABPN1L	nc|ENSG00000205022|A6NDY0-2|PABPN1L	nc|ENSG00000205022|A6NDY0-2|PABPN1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2599182128906	2	486.228768	970.442982	-0.8405	-0.00040867	1.0538	0.00051237	0.21326	0.00010369	486.2290979054456	36.661	0.51531	36.699	36.409	36.924	0.038044					28	13	3	0	0	0	0.024487	1	2831	2831		11.511	3.2797	1	453900			54311	10399	37939	38001	59443	59443					-0.04342157970847893
NLAECPLPD	9	Unmodified	_NLAECPLPD_					0	0	0		nc|ENSG00000205022|A6NDY0-2|PABPN1L;nc|ENSG00000205022|A6NDY0-3|PABPN1L;ENSG00000205022|ENST00000419291|PABPN1L;nc|ENSG00000205022|A6NDY0-4|PABPN1L	nc|ENSG00000205022|A6NDY0-2|PABPN1L	nc|ENSG00000205022|A6NDY0-2|PABPN1L	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.228768	970.442982	0.29343	0.00014267	-0.10793	-5.2479E-05	0.1855	9.0196E-05	486.2285691535551	36.765	0.57257	36.765	36.508	37.081	0	0.13301	-0.000323	NaN	10.866	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436740			54312	10399	37939	38001							-0.04342157970847893
NLAEDIMRL	9	Oxidation (M)	_NLAEDIM(Oxidation (M))RL_		NLAEDIM(1)RL		NLAEDIM(100)RL	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.7800903320312	2	545.781699	1089.54884	0.96901	0.00052887	-1.1985	-0.0006541	-0.22945	-0.00012523	545.7809183639598	63.894	0.6808	63.894	63.522	64.203	0					48	18	3	0	0	0	0.12933	2	7495	7495;7507		104.01	9.477	1	3218900			54313	992	37940	38002	59444;59445	59444		29			0.007651778746321725
NLAEDIMRL	9	Oxidation (M)	_NLAEDIM(Oxidation (M))RL_		NLAEDIM(1)RL		NLAEDIM(84)RL	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.7801513671875	2	545.781699	1089.54884	0.91658	0.00050025	-1.3316	-0.00072677	-0.41503	-0.00022651	545.7808394008312	63.93	0.67832	63.976	63.546	64.225	0.045502					51	18	4	0	0	0	0.24031	1	7418	7418		83.647	14.019	1	3131400			54314	992	37940	38002	59446	59446		29			0.007651778746321725
NLAEDIMRL	9	Unmodified	_NLAEDIMRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.78369140625	2	537.784241	1073.55393	-0.13085	-7.0372E-05	0.1351	7.2656E-05	0.0042471	2.284E-06	537.7841356034613	76.713	0.75946	76.445	76.088	76.848	-0.26806					46	17	3	0	0	0	0.10464	3	9099	9099;9111;9124		109.48	31.088	1	1915600			54315	992	37940	38003	59447;59448;59449	59447					0.020094817372637408
NLAEDIMRL	9	Unmodified	_NLAEDIMRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.783935546875	2	537.784241	1073.55393	-0.11871	-6.3842E-05	0.067167	3.6122E-05	-0.051546	-2.7721E-05	537.7841632712566	76.67	0.80045	76.418	76.063	76.863	-0.25163					55	18	4	0	0	0	0.041068	3	9107	9107;9119;9135		132.76	36.567	1	1840900			54316	992	37940	38003	59450;59451;59452	59450					0.020094817372637408
NLAEDIMRL	9	Unmodified	_NLAEDIMRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7840576171875	2	537.784241	1073.55393	-0.80466	-0.00043273	0.60484	0.00032527	-0.19982	-0.00010746	537.7844415793	76.373	0.96667	76.205	75.892	76.859	-0.16853					49	22	3	0	0	0	0.014738	2	9065	9053;9065		163.15	61.898	1	1784600			54317	992	37940	38003	59453;59454	59454					0.020094817372637408
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7925109863281	2	478.792392	955.570232	2.016	0.00096526	-1.8856	-0.00090281	0.13044	6.2452E-05	478.79136703985694	63.819	1.0142	63.819	63.485	64.499	0					74	27	4	0	0	0	0.016542	2	7473	7473;7482		154.12	58.303	1	5577500			54318	18506	37941	38004	59455;59456	59455					0.09066930965661868
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7927551269531	2	478.792392	955.570232	0.31881	0.00015264	-0.3548	-0.00016988	-0.035991	-1.7232E-05	478.7921337443443	64.025	1.0632	63.774	63.48	64.544	-0.25141					71	28	3	0	0	0	0.048057	2	7477	7477;7488		129.42	27.821	1	5550600			54319	18506	37941	38004	59457;59458	59457					0.09066930965661868
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.79296875	2	478.792392	955.570232	1.7515	0.00083859	-1.831	-0.00087667	-0.079536	-3.8081E-05	478.79139784764607	63.81	0.90216	63.855	63.546	64.448	0.045502					76	24	4	0	0	0	0.048057	2	7404	7395;7404		129.42	44.062	1	5872700			54320	18506	37941	38004	59459;59460	59460					0.09066930965661868
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7921142578125	2	478.792392	955.570232	0.18306	8.7649E-05	-0.24214	-0.00011594	-0.059082	-2.8288E-05	478.79212405139486	64.074	0.98708	63.846	63.549	64.536	-0.22773					48	24	3	0	0	0	0.1158	2	7263	7263;7275		107.01	35.712	1	2136600			54321	18506	37941	38004	59461;59462	59461					0.09066930965661868
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7925109863281	2	478.792392	955.570232	-0.079746	-3.8182E-05	-0.090652	-4.3404E-05	-0.1704	-8.1585E-05	478.7921930017743	64.038	0.90935	63.845	63.601	64.51	-0.19243					48	22	3	0	0	0	0.077175	2	7278	7265;7278		118.74	36.438	1	1963300			54322	18506	37941	38004	59463;59464	59464					0.09066930965661868
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;RALGAPB|p.F971Sfs*53|1|0.29|ENSG00000170471|chr20:38548693-38548693|T/-|frameshift_variant;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7927551269531	2	478.792392	955.570232	-0.0018203	-8.7156E-07	-0.12212	-5.847E-05	-0.12394	-5.9342E-05	478.7921748905758	64.151	0.78591	63.893	63.637	64.423	-0.25824					43	19	3	0	0	0	0.03666	2	7278	7267;7278		136.27	51.353	1	1714900			54323	18506	37941	38004	59465;59466	59466					0.09066930965661868
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.2955017089844	2	500.295299	998.576045	-0.22997	-0.00011505	0.75929	0.00037987	0.52932	0.00026482	500.2955190253186	26.177	0.96215	26.177	25.779	26.741	0					48	22	4	0	0	0	0.033448	2	1323	1311;1323		138.83	28.258	1	1615700			54324	5048	37942	38005	59467;59468	59468					0.07670029477321805
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.29547119140625	2	500.295299	998.576045	-0.53248	-0.0002664	1.0559	0.00052824	0.52338	0.00026185	500.29566281136243	26.242	0.69841	26.219	25.954	26.652	-0.023088					43	16	4	0	0	0	0.043667	1	1304	1304		131.03	15.537	1	1670800			54325	5048	37942	38005	59469	59469					0.07670029477321805
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2950439453125	2	500.295299	998.576045	0.15972	7.9905E-05	0.19087	9.5494E-05	0.35059	0.0001754	500.295213739959	26.044	0.79315	26.125	25.75	26.543	0.081293					43	18	4	0	0	0	0.020687	2	1232	1232;1249		148.99	31.176	1	1658600			54326	5048	37942	38005	59470;59471	59470					0.07670029477321805
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.295299	998.576045	-0.6984	-0.00034941	0.48203	0.00024116	-0.21637	-0.00010825	500.29550579788054	26.415	0.4384	26.179	25.977	26.416	-0.23603	0.039805	-0.00020329	NaN	148.99	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293640			54327	5048	37942	38005							0.07670029477321805
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.295299	998.576045	-1.2547	-0.00062773	0.94234	0.00047145	-0.31236	-0.00015627	500.29569212696134	26.345	0.40172	26.182	25.98	26.382	-0.16331	0.042589	0.0002573	NaN	148.99	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321570			54328	5048	37942	38005							0.07670029477321805
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2806396484375	2	508.28018	1014.54581	-0.67139	-0.00034125	-0.10067	-5.1166E-05	-0.77205	-0.00039242	508.28017707652793	47.99	1.6125	47.99	47.529	49.141	0					140	47	5	0	0	0	0.01344	8	4851	4839;4851;4862;4874;4886;4898;4910;4925		169.65	50.808	1	61019000			54329	1394;2210;2271	37943	38006	59472;59473;59474;59475;59476;59477;59478;59479	59473					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2799377441406	2	508.28018	1014.54581	-0.71906	-0.00036548	-0.086936	-4.4188E-05	-0.806	-0.00040967	508.28019029431965	48.159	1.6444	48.006	47.574	49.218	-0.15301					93	47	2	0	0	0	0.01344	8	4886	4839;4850;4862;4874;4886;4898;4911;4925		169.65	57.241	1	71039000			54330	1394;2210;2271	37943	38006	59480;59481;59482;59483;59484;59485;59486;59487	59484					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.28033447265625	2	508.28018	1014.54581	-0.66773	-0.00033939	-0.084239	-4.2817E-05	-0.75197	-0.00038221	508.28018428938094	47.854	1.5915	47.913	47.49	49.081	0.059292					118	45	5	0	0	0	0.016953	7	4793	4759;4769;4781;4793;4805;4817;4829		152.06	48.148	1	67008000			54331	1394;2210;2271	37943	38006	59488;59489;59490;59491;59492;59493;59494	59491					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.28033447265625	2	508.28018	1014.54581	-0.42333	-0.00021517	-0.55965	-0.00028446	-0.98298	-0.00049963	508.2799656583836	47.972	0.77035	47.874	47.52	48.291	-0.097553					37	20	2	0	0	0	0.025115	4	4721	4710;4721;4733;4745		145.46	44.297	1	18809000			54332	1394;2210;2271	37943	38006	59495;59496;59497;59498	59496					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2799377441406	2	508.28018	1014.54581	-1.0329	-0.000525	-0.056998	-2.8971E-05	-1.0899	-0.00055397	508.2802378161631	48.338	0.7331	48.062	47.664	48.397	-0.27598					36	19	2	0	0	0	0.031832	5	4779	4745;4755;4767;4779;4792		140.11	46.969	1	20250000			54333	1394;2210;2271	37943	38006	59499;59500;59501;59502;59503	59502					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant;ENSG00000100994|ENST00000216962|PYGB	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant;nc|ENSG00000100504|P06737-2|PYGL;PYGB|p.M782Ifs*34|1|0.49|ENSG00000100994|chr20:25295635-25295636|-/T|frameshift_variant	PYGM|p.V604Cfs*32|1|0.09|ENSG00000068976|chr11:64751614-64751615|-/TGCA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.28009033203125	2	508.28018	1014.54581	0.058689	2.983E-05	-1.1791	-0.00059933	-1.1204	-0.0005695	508.2796560860598	48.094	0.80766	47.907	47.526	48.334	-0.18684					40	21	2	0	0	0	0.038547	5	4726	4715;4726;4738;4749;4762		134.77	44.165	1	16312000			54334	1394;2210;2271	37943	38006	59504;59505;59506;59507;59508	59505					0.03911670812135526
NLAERRGIA	9	Unmodified	_NLAERRGIA_					0	0	0			REV__ENST00000469556.1_1_1:24122997-24123541:-|nuORF	REV__ENST00000469556.1_1_1:24122997-24123541:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2076721191406	2	500.28834	998.562127	-1.041	-0.00052079	4.1148	0.0020586	3.0738	0.0015378	500.2905417808875	43.182	0.59563	42.956	42.714	43.31	-0.22597					30	15	2	0	0	0	0.024261	1	3900	3900		64.207	7.4862	1	1940600	+		54335	22338	37944	38007	59509	59509					0.06278796768890516
NLAFKEVY	8	Unmodified	_NLAFKEVY_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.3110656738281	2	492.263468	982.512382	-0.72312	-0.00035596	0.31022	0.00015271	-0.4129	-0.00020326	492.2632873239868	62.447	0.76016	62.266	61.65	62.41	-0.18154					54	19	5	0	0	0	0.027866	1	6973	6973		38.806	0	1	1918700	+		54336	22840	37945	38008	59510	59510					0.02042669040235978
NLAKEREPV	9	Unmodified	_NLAKEREPV_					0	0	0		nc|ENSG00000004139|Q6SZW1-2|SARM1;ENSG00000004139|ENST00000585482|SARM1	nc|ENSG00000004139|Q6SZW1-2|SARM1	nc|ENSG00000004139|Q6SZW1-2|SARM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.8237915039062	2	528.29583	1054.57711	0.3279	0.00017323	-4.0934	-0.0021625	-3.7655	-0.0019893	528.2938564898932	68.519	0.11009	68.538	68.462	68.573	0.018921					4	2	2	0	0	0	0.024457	1	8142	8142		29.15	0	1	34727			54337	737	37946	38009	59511	59511					0.052002438462295686
NLAKIQTN	8	Unmodified	_NLAKIQTN_					0	0	0			REV__nc|ENSG00000115750|Q53T94-2|TAF1B	REV__nc|ENSG00000115750|Q53T94-2|TAF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2693786621094	2	451.258717	900.50288	-0.12937	-5.838E-05	1.3684	0.0006175	1.239	0.00055912	451.2586213870436	52.059	0.44417	51.94	51.682	52.126	-0.11876					21	11	3	0	0	0	0.027866	1	5371	5371		27.882	0	1	149010	+		54338	22228	37947	38010	59512	59512					0.04864900754705559
NLAKIQTN	8	Unmodified	_NLAKIQTN_					0	0	0			REV__nc|ENSG00000115750|Q53T94-2|TAF1B	REV__nc|ENSG00000115750|Q53T94-2|TAF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.26885986328125	2	451.258717	900.50288	0.092256	4.1631E-05	1.3307	0.00060051	1.423	0.00064214	451.2584224596409	52.098	0.59891	51.914	51.634	52.233	-0.18404					29	15	3	0	0	0	0.027866	1	5389	5389		27.882	21.147	1	250430	+		54339	22228	37947	38010	59513	59513					0.04864900754705559
NLAKKLQK	8	Unmodified	_NLAKKLQK_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.80853271484375	2	471.808377	941.6022	1.3567	0.00064011	-1.4299	-0.00067462	-0.07314	-3.4508E-05	471.8075345958301	19.484	0.98993	19.25	18.533	19.523	-0.23345					36	19	3	0	0	0	1.0574	1	414	414		24.203	4.8428	1	263920			54340	9358	37948	38011	59514	59514					0.12906343439465218
NLALLKQAVEI	11	Unmodified	_NLALLKQAVEI_					0	0	0			REV__ENSG00000130560|ENST00000371756|UBAC1	REV__ENSG00000130560|ENST00000371756|UBAC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.3693237304688	2	606.371538	1210.72852	-0.18685	-0.0001133	-3.2513	-0.0019715	-3.4382	-0.0020848	606.3694060704071	92.814	2.8002	92.67	91.745	94.545	-0.14411					184	65	4	0	0	0	1.0557	1	11374	11374		23.523	0	1	585740	+		54341	23127	37949	38012	59515	59515					0.13158805154080255
NLALQVQT	8	Unmodified	_NLALQVQT_					0	0	0			REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.29217529296875	2	443.753267	885.491981	-0.83566	-0.00037083	0.65567	0.00029096	-0.17999	-7.9871E-05	443.75327521492346	27.994	0.69114	27.826	27.317	28.008	-0.16816					29	16	3	0	0	0	0.027866	1	1602	1602		17.365	0.89182	1	180700	+		54342	33506	37950	38013	59516	59516					0.04465498380432109
NLALQVQT	8	Unmodified	_NLALQVQT_					0	0	0			REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.753267	885.491981	-0.70338	-0.00031213	1.2811	0.00056849	0.57772	0.00025637	443.75341695343525	28.139	0.52744	28.139	27.963	28.49	0	0.22149	0.00053388	NaN	17.365	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81533	+		54343	33506	37950	38013							0.04465498380432109
NLALQVQT	8	Unmodified	_NLALQVQT_					0	0	0			REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	REV__ENST00000483346.2_1_2:200213306-200233427:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.753267	885.491981	-0.4976	-0.00022081	0.97696	0.00043353	0.47936	0.00021272	443.7533418572682	27.77	0.5727	27.851	27.463	28.036	0.081293	-0.066328	0.00026395	NaN	17.365	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92225	+		54344	33506	37950	38013							0.04465498380432109
NLALVGKR	8	Unmodified	_NLALVGKR_					0	0	0			REV__ENSG00000148803|ENST00000278025|FUOM	REV__ENSG00000148803|ENST00000278025|FUOM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.248046875	2	435.779619	869.544686	-0.28255	-0.00012313	0.46193	0.0002013	0.17938	7.8172E-05	435.77967630451616	33.776	0.61626	33.576	33.286	33.902	-0.20019					27	15	3	0	0	0	0.027866	1	2475	2475		12.207	8.5225	1	639370	+		54345	24636	37951	38014	59517	59517					0.10469501233899337
NLAMELKE	8	Unmodified	_NLAMELKE_					0	0	0			REV__nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	REV__nc|ENSG00000166263|Q6ZWJ1-2|STXBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.28436279296875	2	474.24696	946.479368	-0.29379	-0.00013933	-3.5167	-0.0016678	-3.8105	-0.0018071	474.24509457424386	53.482	0.6083	53.578	53.266	53.874	0.095669					37	16	3	0	0	0	0.027866	1	5713	5713		35.618	0	1	1420100	+		54346	25996	37952	38015	59518	59518					0.003987189258737089
NLANSETDMP	10	Unmodified	_NLANSETDMP_					0	0	0		ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	ENSG00000240720|ENST00000458448|LRRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.27587890625	2	546.237321	1090.46009	-1.014	-0.00055387	-2.1632	-0.0011816	-3.1772	-0.0017355	546.2370728442835	73.014	0.19937	73.014	72.91	73.109	0					6	4	2	0	0	0	0.03519	1	8894	8894		30.318	1.1477	1	41006			54347	10772	37953	38016	59519	59519					-0.08152282155697321
NLAPKEGND	9	Unmodified	_NLAPKEGND_					0	0	0			REV__ENSG00000050030|ENST00000055682|NEXMIF	REV__ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3057556152344	2	479.235439	956.456324	-0.16753	-8.0285E-05	0.51644	0.00024749	0.34891	0.00016721	479.23592906051766	32.057	0.35727	32.069	31.902	32.26	0.011799					13	8	2	0	0	0	0.024397	1	2187	2187		18.262	6.7511	1	47253	+		54348	20153	37954	38017	59520	59520					-0.02364583867233705
NLAPKGRN	8	Unmodified	_NLAPKGRN_					0	0	0		ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF;ENSG00000256061|ENST00000321149|DNAAF4	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2519226074219	2	435.251226	868.487899	-0.42314	-0.00018417	0.40683	0.00017707	-0.016314	-7.1006E-06	435.2513153868404	92.011	2.0391	92.011	90.97	93.009	0					95	48	3	0	0	0	1.0574	1	11645	11645		24.203	3.7209	1	2036300			54349	10902	37955	38018	59521	59521					0.04839453677379879
NLAPKGRN	8	Unmodified	_NLAPKGRN_					0	0	0		ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF;ENSG00000256061|ENST00000321149|DNAAF4	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25177001953125	2	435.251226	868.487899	0.55221	0.00024035	-0.69019	-0.00030041	-0.13798	-6.0055E-05	435.2508297970553	92.207	3.6429	92.065	90.861	94.504	-0.14131					128	85	3	0	0	0	1.0338	1	11325	11325		31.955	1.4512	1	1192800			54350	10902	37955	38018	59522	59522					0.04839453677379879
NLAPNSNK	8	Unmodified	_NLAPNSNK_					0	0	0			REV__CLIC1|p.D127N|1|0.11|ENSG00000213719|chr6:31733569-31733569|C/T|missense_variant	REV__CLIC1|p.D127N|1|0.11|ENSG00000213719|chr6:31733569-31733569|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.74853515625	2	429.227417	856.44028	-0.84279	-0.00036175	3.8147	0.0016374	2.9719	0.0012756	429.2289543501672	25.343	0.47475	25.343	25.052	25.527	0					19	11	2	0	0	0	0.027866	1	1209	1209		24.203	0	1	492150	+		54351	19497	37956	38019	59523	59523					0.0063175468651479605
NLARQANV	8	Unmodified	_NLARQANV_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|115|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|14|1|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.7697448730469	2	443.248683	884.482814	-0.3489	-0.00015465	0.66835	0.00029625	0.31945	0.0001416	443.24889705454484	20.116	1.3432	20.116	19.556	20.9	0					42	27	2	0	0	0	0.027866	1	528	528		18.324	0	1	93016			54352	17847	37957	38020	59524	59524					0.03595149814748311
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.77154541015625	2	510.771657	1019.52876	0.13155	6.7194E-05	-0.46793	-0.000239	-0.33637	-0.00017181	510.7714249650101	84.635	1.4073	84.635	84.381	85.789	0					79	33	3	0	0	0	0.011521	5	10593	10582;10593;10605;10616;10629		229.33	86.22	1	14610000			54353	7528	37958	38021	59525;59526;59527;59528;59529	59526					0.019777502063448082
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.771484375	2	510.771657	1019.52876	-0.78987	-0.00040344	0.61884	0.00031609	-0.17103	-8.7358E-05	510.7719353070694	84.557	1.6811	84.484	83.743	85.424	-0.072769					126	39	5	0	0	0	0.0087688	5	10546	10535;10546;10558;10570;10588		245.03	87.704	1	14600000			54354	7528	37958	38021	59530;59531;59532;59533;59534	59531					0.019777502063448082
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.77117919921875	2	510.771657	1019.52876	-0.66248	-0.00033838	0.55539	0.00028368	-0.10709	-5.4699E-05	510.7718822219075	84.49	1.9784	84.517	83.641	85.619	0.026558					134	46	5	0	0	0	0.011521	5	10499	10482;10499;10516;10528;10542		229.33	84.548	1	13872000			54355	7528	37958	38021	59535;59536;59537;59538;59539	59536					0.019777502063448082
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.771484375	2	510.771657	1019.52876	0.47884	0.00024458	-0.53632	-0.00027394	-0.057477	-2.9358E-05	510.77130749996553	84.62	1.0828	84.416	84.124	85.207	-0.20329					71	25	4	0	0	0	0.011521	3	10232	10222;10232;10245		229.33	85.44	1	2330500			54356	7528	37958	38021	59540;59541;59542	59541					0.019777502063448082
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7719421386719	2	510.771657	1019.52876	0.56383	0.00028799	-0.7961	-0.00040663	-0.23227	-0.00011864	510.77117112390926	84.465	1.1728	84.307	83.976	85.149	-0.15868					72	27	4	0	0	0	0.012922	4	10229	10207;10219;10229;10241		214.23	70.344	1	2505700			54357	7528	37958	38021	59543;59544;59545;59546	59545					0.019777502063448082
NLASFIEQV	9	Unmodified	_NLASFIEQV_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7722473144531	2	510.771657	1019.52876	0.42096	0.00021501	-0.85093	-0.00043463	-0.42997	-0.00021962	510.7711587845692	84.491	1.3038	84.353	84.064	85.368	-0.13789					72	30	4	0	0	0	0.012922	3	10203	10203;10222;10233		185.72	46.893	1	2042300			54358	7528	37958	38021	59547;59548;59549	59547					0.019777502063448082
NLATIKLY	8	Unmodified	_NLATIKLY_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.3052673339844	2	468.28166	934.548768	-0.23726	-0.00011111	0.97864	0.00045828	0.74137	0.00034717	468.2819872056272	53.128	0.33557	52.98	52.797	53.132	-0.14723					11	8	2	0	0	0	0.027866	1	5710	5710		38.806	5.3132	1	104920	+		54359	23247	37959	38022	59550	59550					0.07887545936944207
NLATSVVNL	9	Unmodified	_NLATSVVNL_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2822265625	2	465.766374	929.518196	0.33576	0.00015639	0.86354	0.00040221	1.1993	0.00055859	465.76674338707846	69.011	0.65358	68.768	68.47	69.123	-0.24277					18	15	2	0	0	0	0.024477	1	8046	8046		44.117	5.3107	1	164210	+		54360	22401	37960	38023	59551	59551					0.05061767551910634
NLATSVVNL	9	Unmodified	_NLATSVVNL_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.766374	929.518196	-0.48932	-0.00022791	2.4107	0.0011228	1.9214	0.0008949	465.7663395315485	68.693	0.6096	68.693	68.407	69.016	0	-0.04084	0.00066379	NaN	49.442	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246550	+		54361	22401	37960	38023							0.05061767551910634
NLATSVVNL	9	Unmodified	_NLATSVVNL_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.766374	929.518196	0.38412	0.00017891	1.6789	0.00078199	2.0631	0.0009609	465.7660104809555	69.027	0.41573	68.734	68.517	68.933	-0.29267	0.00052626	-1.7841E-05	NaN	49.442	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326050	+		54362	22401	37960	38023							0.05061767551910634
NLATSVVNL	9	Unmodified	_NLATSVVNL_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.766374	929.518196	0.76142	0.00035465	1.606	0.00074801	2.3674	0.0011027	465.765876035769	68.702	0.63921	68.72	68.534	69.174	0.017502	-0.014219	-8.5797E-05	NaN	49.442	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341640	+		54363	22401	37960	38023							0.05061767551910634
NLATSVVNL	9	Unmodified	_NLATSVVNL_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.766374	929.518196	-0.7653	-0.00035645	2.0036	0.00093319	1.2383	0.00057674	465.76754891598466	69.015	0.41476	68.754	68.586	69.001	-0.26166	0.020029	0.00028455	NaN	49.442	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96249	+		54364	22401	37960	38023							0.05061767551910634
NLCKKMLTV	9	Unmodified	_NLCKKMLTV_					0	0	0		G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	G3BP2|p.E155Vfs*34|1|0.07|ENSG00000138757|chr4:75655849-75655850|-/AGAATTATTGTTGAAAGTAA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.298828125	2	525.29593	1048.57731	-1.1888	-0.00062449	2.9595	0.0015546	1.7707	0.00093014	525.2973193443728	80.982	0.75629	80.982	80.667	81.423	0					50	18	4	0	0	0	0.67687	1	10134	10134		47.657	8.4045	1	6097900			54365	17666	37961	38024	59552	59552					0.05496204250221126
NLCNLEIIQ	9	Unmodified	_NLCNLEIIQ_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2783813476562	2	530.278792	1058.54303	-0.092343	-4.8967E-05	0.16274	8.6298E-05	0.070399	3.7331E-05	530.278556790213	69.564	1.0238	69.342	69.103	70.127	-0.22245					37	24	2	0	0	0	0.053401	1	8072	8072		127.46	15.051	1	1386800	+		54366	24273	37962	38025	59553	59553					0.016100793629675536
NLCNNYIKT	9	Unmodified	_NLCNNYIKT_					0	0	0		DNAAF1|p.S181C|1|0.25|ENSG00000154099|chr16:84154765-84154765|A/T|missense_variant	DNAAF1|p.S181C|1|0.25|ENSG00000154099|chr16:84154765-84154765|A/T|missense_variant	DNAAF1|p.S181C|1|0.25|ENSG00000154099|chr16:84154765-84154765|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8060302734375	2	541.768591	1081.52263	-0.57996	-0.00031421	1.5353	0.00083176	0.9553	0.00051755	541.7694657689442	52.555	0.57192	52.647	52.404	52.976	0.091938					17	14	2	0	0	0	0.024477	1	5558	5558		20.947	10.081	1	75416			54367	647	37963	38026	59554	59554					-0.014870912968262928
NLCVIGILL	9	Unmodified	_NLCVIGILL_					0	0	0		ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.29266357421875	2	479.293714	956.572874	0.15751	7.5492E-05	-1.0886	-0.00052174	-0.93106	-0.00044625	479.2931968583014	55.86	0.29572	55.704	55.591	55.887	-0.15601					14	7	2	0	0	0	0.024418	1	6181	6181		28.254	1.4582	1	378210			54368	8359	37964	38027	59555	59555					0.09285063098980118
NLCWTLPA	8	Unmodified	_NLCWTLPA_					0	0	0		ENST00000493657.1_1_1:1244633-1244984:+|nuORF;ENST00000463758.1_1_1:1244702-1244984:+|nuORF;ENST00000470520.5_1_1:1244480-1246298:+|nuORF;ENSG00000169972|ENST00000379031|PUSL1	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	ENST00000493657.1_1_1:1244633-1244984:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.229248046875	2	459.231113	916.447674	-0.85767	-0.00039387	-3.0289	-0.001391	-3.8865	-0.0017848	459.2296087530466	28.969	0.72477	28.969	28.571	29.296	0					44	17	4	0	0	0	0.845	1	1735	1735		55.504	0.73953	1	1783700			54369	7999	37965	38028	59556	59556					-0.013892290374087679
NLDAEAPA	8	Unmodified	_NLDAEAPA_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.584228515625	2	400.692875	799.371197	0.17255	6.914E-05	2.7699	0.0011099	2.9424	0.001179	400.6937003663159	25.325	0.37996	25.098	24.931	25.311	-0.22683					12	8	2	0	0	0	0.027866	1	1219	1219		25.45	13.939	1	59609			54370	6884	37966	38029	59557	59557					-0.03651329333058584
NLDAWFKV	8	Unmodified	_NLDAWFKV_					0	0	0			REV__ENSG00000007866|ENST00000338863|TEAD3;REV__nc|ENSG00000197905|Q15561-2|TEAD4	REV__ENSG00000007866|ENST00000338863|TEAD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.295166015625	2	496.763635	991.512717	0.37913	0.00018834	-4.252	-0.0021122	-3.8728	-0.0019239	496.7611922920674	41.156	0.46284	41.033	40.797	41.26	-0.12317					24	12	2	0	0	0	0.027866	1	3680	3680		57.811	0	1	2226700	+		54371	19867;28362	37967	38030	59558	59558					0.01662088760087954
NLDDHYPE	8	Unmodified	_NLDDHYPE_					0	0	0		nc|nan|Q8WYQ4-2|C22orf15;ENSG00000169314|ENST00000402217|C22orf15	nc|nan|Q8WYQ4-2|C22orf15	nc|nan|Q8WYQ4-2|C22orf15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7830505371094	2	501.711796	1001.40904	-0.29127	-0.00014613	2.6952	0.0013522	2.4039	0.0012061	501.7132659406847	44.252	0.26746	44.289	44.176	44.443	0.0369					10	7	2	0	0	0	0.027866	1	4133	4133		23.042	0	1	120030			54372	7928	37968	38031	59559	59559					-0.09160863138242803
NLDDNIPED	9	Unmodified	_NLDDNIPED_					0	0	0		ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3041381835938	2	522.727643	1043.44073	0.012638	6.6064E-06	-2.4461	-0.0012787	-2.4335	-0.0012721	522.7276810154153	21.154	0.2436	20.977	20.87	21.113	-0.17721					7	4	2	0	0	0	0.024427	1	640	640		42.396	20.436	1	8619.8			54373	3914	37969	38032	59560	59560					-0.0792491517495364
NLDIEATGAIV	11	Unmodified	_NLDIEATGAIV_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.3505859375	2	558.300778	1114.587	-0.47618	-0.00026585	0.38743	0.0002163	-0.088744	-4.9546E-05	558.3008900733745	50.052	0.637	50.052	49.842	50.479	0					45	18	3	0	0	0	0.024741	1	5177	5177		37.812	9.5572	1	1191400	+		54374	19766	37970	38033	59561	59561					0.034293870609417354
NLDKLSSSLY	10	Unmodified	_NLDKLSSSLY_					0	0	0			REV__nc|ENSG00000138592|P40818-2|USP8;REV__USP8-MYEF2|1|fusion	REV__USP8-MYEF2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.30078125	2	570.300778	1138.587	-0.25853	-0.00014744	3.5697	0.0020358	3.3112	0.0018884	570.3027749960777	99.326	1.4678	99.322	98.431	99.899	-0.0038834					113	33	5	0	0	0	0.85955	1	12588	12588		56.721	5.3856	1	3002700	+		54375	23863;37772	37971	38034	59562	59562					0.02325387060977846
NLDKLVLVL	9	Unmodified	_NLDKLVLVL_					0	0	0			REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8312377929688	2	513.831517	1025.64848	-0.14252	-7.323E-05	-0.26151	-0.00013437	-0.40403	-0.0002076	513.8313241570768	67.575	1.0663	67.286	67.03	68.096	-0.28835					76	26	5	0	0	0	0.53979	1	8027	8027		56.721	5.3856	1	6087100	+		54376	33891	37972	38035	59563	59563					0.13668363550891627
NLDKNTVGY	9	Unmodified	_NLDKNTVGY_					0	0	0		NOL9-DNAJC11|1|fusion;NOL9-DNAJC11|2|fusion;nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	NOL9-DNAJC11|1|fusion	NOL9-DNAJC11|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2584228515625	2	512.258914	1022.50327	-0.46799	-0.00023973	-0.32388	-0.00016591	-0.79187	-0.00040564	512.258760481457	38.007	1.0178	37.827	37.522	38.539	-0.17929					65	28	5	0	0	0	0.041068	1	3098	3098		132.76	60.88	1	2008200			54377	18881	37973	38036	59564	59564					-0.007077243161006663
NLDKQNSL	8	Unmodified	_NLDKQNSL_					0	0	0			REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2632141113281	2	466.245806	930.47706	-1.0987	-0.00051224	3.8901	0.0018138	2.7915	0.0013015	466.2478199159736	37.882	0.50171	37.663	37.424	37.926	-0.21848					20	13	2	0	0	0	0.027866	1	3087	3087		87.754	5.4493	1	271850	+		54378	21676	37974	38037	59565	59565					0.009040065124395369
NLDLTANLL	9	Unmodified	_NLDLTANLL_					0	0	0		ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	ENSG00000167984|ENST00000359128|NLRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7762145996094	2	493.779482	985.544411	0.1725	8.5179E-05	0.1745	8.6164E-05	0.347	0.00017134	493.7795846484036	52.337	0.73232	52.19	51.95	52.682	-0.14735					25	18	2	0	0	0	0.024374	1	5607	5607		49.442	17.912	1	1054800			54379	7761	37975	38038	59566	59566					0.05106036723384477
NLDLTRVL	8	Unmodified	_NLDLTRVL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7900390625	2	472.282192	942.549831	0.26011	0.00012284	0.99843	0.00047154	1.2585	0.00059439	472.2821815805791	47.551	0.78777	47.551	47.216	48.003	0					40	23	3	0	0	0	0.027866	1	4826	4826		82.241	10.945	1	718170			54380	8932	37976	38039	59567	59567					0.0762576030585933
NLDLTRVL	8	Unmodified	_NLDLTRVL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.282192	942.549831	0.50211	0.00023714	1.7011	0.0008034	2.2032	0.0010405	472.28307464380237	47.656	0.64933	47.503	47.052	47.702	-0.15301	0.16203	0.0018981	NaN	82.241	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	629080			54381	8932	37976	38039							0.0762576030585933
NLDLTRVL	8	Unmodified	_NLDLTRVL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.282192	942.549831	-0.38118	-0.00018002	5.6441	0.0026656	5.2629	0.0024856	472.28487889898827	47.415	0.61501	47.474	47.032	47.647	0.059097	0.13315	0.0056225	NaN	82.241	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385030			54382	8932	37976	38039							0.0762576030585933
NLDLWITF	8	Unmodified	_NLDLWITF_					0	0	0			REV__ENSG00000213398|ENST00000264005|LCAT	REV__ENSG00000213398|ENST00000264005|LCAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27667236328125	2	511.271293	1020.52803	-0.26555	-0.00013577	1.5919	0.00081391	1.3264	0.00067814	511.7747608981032	73.369	0.24904	73.092	72.884	73.133	-0.2769					8	5	2	0	0	0	0.027866	1	8602	8602		57.811	19.005	1	91050	+		54383	28737	37977	38040	59568	59568					0.018589555572816607
NLDLWITF	8	Unmodified	_NLDLWITF_					0	0	0			REV__ENSG00000213398|ENST00000264005|LCAT	REV__ENSG00000213398|ENST00000264005|LCAT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.271293	1020.52803	-0.56492	-0.00028883	4.3689	0.0022337	3.804	0.0019449	511.27339110682175	73.417	0.36989	73.417	73.146	73.516	0	0.16231	0.00062141	NaN	57.811	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238800	+		54384	28737	37977	38040							0.018589555572816607
NLDMLSTLI	9	Unmodified	_NLDMLSTLI_					0	0	0		nc|ENSG00000167139|Q8IYX1-2|TBC1D21;ENSG00000167139|ENST00000300504|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8184509277344	2	510.275718	1018.53688	0.038175	1.948E-05	1.321	0.00067407	1.3592	0.00069355	510.27549797119036	74.962	1.2538	74.703	74.071	75.325	-0.25887					69	30	3	0	0	0	0.022756	1	9174	9174		90.777	24.973	1	243980			54385	7654	37978	38041	59569	59569					0.028355611314509588
NLDNAFVT	8	Unmodified	_NLDNAFVT_					0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.76123046875	2	447.2218	892.429047	-0.64827	-0.00028992	4.4766	0.002002	3.8283	0.0017121	447.22369340637164	45.05	1.259	44.901	44.322	45.581	-0.1488					53	36	2	0	0	0	0.027866	1	4372	4372		37.159	0	1	135980	+		54386	22908	37979	38042	59570	59570					-0.021470674076226715
NLDNHLKAE	9	Unmodified	_NLDNHLKAE_					0	0	0		SYNE1|p.R2232K|1|0.16|ENSG00000131018|chr6:152407042-152407042|C/T|missense_variant	SYNE1|p.R2232K|1|0.16|ENSG00000131018|chr6:152407042-152407042|C/T|missense_variant	SYNE1|p.R2232K|1|0.16|ENSG00000131018|chr6:152407042-152407042|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.2691040039062	2	527.269813	1052.52507	-1.2395	-0.00065357	1.2483	0.0006582	0.0087786	4.6287E-06	527.2699205073327	54.549	1.3423	54.549	53.976	55.319	0					109	38	5	0	0	0	0.32064	1	5973	5973		72.879	4.0924	1	7796200			54387	38048	37980	38043	59571	59571					0.00091080432457602
NLDNHLLPL	9	Unmodified	_NLDNHLLPL_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7920532226562	2	524.792924	1047.57129	-0.13961	-7.3266E-05	-0.6019	-0.00031587	-0.74151	-0.00038914	524.7925667156934	61.43	1.2235	61.204	60.86	62.084	-0.22663					95	32	4	0	0	0	0.39228	1	7087	7087		66.429	7.6473	1	8030000	+		54388	23169	37981	38044	59572	59572					0.049411453345555856
NLDNHLLPL	9	Unmodified	_NLDNHLLPL_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7921752929688	2	524.792924	1047.57129	0.070702	3.7104E-05	-0.92922	-0.00048765	-0.85851	-0.00045054	524.7924284079555	61.145	1.1899	61.216	60.871	62.061	0.071129					96	31	5	0	0	0	0.25032	2	6969	6969;6994		82.305	2.854	1	7743900	+		54389	23169	37981	38044	59573;59574	59573					0.049411453345555856
NLDNIKPQ	8	Unmodified	_NLDNIKPQ_					0	0	0		ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8087158203125	2	471.256174	940.497795	0.19936	9.3948E-05	2.8254	0.0013315	3.0247	0.0014254	471.25648219529916	40.858	1.0018	40.881	40.562	41.564	0.023003					48	28	4	0	0	0	0.027866	1	3562	3562		51.335	10.557	1	344660			54390	17232	37982	38045	59575	59575					0.025165968920873638
NLDNSVVDL	9	Unmodified	_NLDNSVVDL_					0	0	0		ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7826232910156	2	494.750921	987.48729	-0.62899	-0.00031119	1.9086	0.00094429	1.2796	0.0006331	494.75182615741164	46.525	0.91656	46.372	46.172	47.089	-0.15301					34	24	2	0	0	0	0.024319	1	4649	4649		39.253	7.298	1	111430			54391	6488	37983	38046	59576	59576					-0.006954305530030069
NLDPAVHEVP	10	Unmodified	_NLDPAVHEVP_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3021240234375	2	545.780013	1089.54547	-0.79937	-0.00043628	4.3345	0.0023657	3.5352	0.0019294	545.782398672168	64.515	0.86404	64.561	64.189	65.053	0.045502					61	22	4	0	0	0	0.03519	1	7538	7538		42.864	5.0528	1	3573000			54392	10144	37984	38047	59577	59577					0.0042825109228488145
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2587890625	2	533.258579	1064.50261	-0.76166	-0.00040616	0.86022	0.00045872	0.098562	5.2559E-05	533.258898377673	69.626	1.1222	69.359	69.037	70.159	-0.26725					76	26	4	0	0	0	0.01452	4	8090	8069;8079;8090;8103		186.09	95.312	1	3085100			54393	8372	37985	38048	59578;59579;59580;59581	59580					-0.02706563755782554
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2589721679688	2	533.258579	1064.50261	-0.32015	-0.00017072	0.38391	0.00020472	0.063763	3.4002E-05	533.2586597581563	69.579	1.1135	69.329	68.95	70.063	-0.25063					74	26	5	0	0	0	0.014034	3	8075	8075;8086;8098		195.81	108.06	1	3690500			54394	8372	37985	38048	59582;59583;59584	59582					-0.02706563755782554
NLDPLTETY	9	Unmodified	_NLDPLTETY_					0	0	0		nc|ENSG00000173418|P61599-2|NAA20;ENSG00000173418|ENST00000334982|NAA20	nc|ENSG00000173418|P61599-2|NAA20	nc|ENSG00000173418|P61599-2|NAA20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2587890625	2	533.258579	1064.50261	-0.40053	-0.00021359	0.46014	0.00024537	0.059608	3.1786E-05	533.2586655060392	69.581	1.0258	69.358	69.062	70.087	-0.22245					68	24	4	0	0	0	0.015841	3	8069	8059;8069;8080		195.81	99.623	1	3587700			54395	8372	37985	38048	59585;59586;59587	59586					-0.02706563755782554
NLDPQPPI	8	Unmodified	_NLDPQPPI_					0	0	0		nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.2402038574219	2	447.239993	892.465432	-0.41952	-0.00018763	-0.17843	-7.9801E-05	-0.59795	-0.00026743	447.23993290944435	54.411	1.9123	54.275	53.928	55.84	-0.13617					140	53	5	0	0	0	0.6248	1	5765	5765		73.975	2.5968	1	35352000			54396	817	37986	38049	59588	59588					0.01489809489100935
NLDRDRAR	8	Unmodified	_NLDRDRAR_					0	0	0			REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3157043457031	2	508.273221	1014.53189	0.42554	0.00021629	1.8204	0.00092524	2.2459	0.0011415	508.2740358018651	69.585	0.98975	69.292	69.01	70	-0.29291					39	24	2	0	0	0	0.027866	1	8315	8315		12.207	0	1	1885100	+		54397	30340	37987	38050	59589	59589					0.025204381037042367
NLDRQLQDS	9	Unmodified	_NLDRQLQDS_					0	0	0		ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8134765625	2	544.770177	1087.5258	-1.8564	-0.0010113	1.1253	0.00061304	-0.73107	-0.00039827	544.7707379201894	92.693	1.139	92.549	92.167	93.306	-0.14356					32	26	2	0	0	0	0.024427	1	11465	11465		42.396	19.354	1	50508			54398	10430	37988	38051	59590	59590					-0.014461249184705594
NLDSIMDY	8	Unmodified	_NLDSIMDY_					0	0	0			REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.27984619140625	2	485.71295	969.411348	-0.1868	-9.0733E-05	3.6501	0.0017729	3.4633	0.0016821	485.714585903327	52.385	1.8796	52.385	50.675	52.554	0					87	51	2	0	0	0	0.027866	1	5330	5330		55.504	9.5523	1	325080	+		54399	20661	37989	38052	59591	59591					-0.07458150724778534
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MSMS	OPSCC_40_ClassI_Rep-1	4	568.7852172851562	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.915	1	44.816	44.316	45.316	-0.099445								0	0	0	0.014365	1	4222	4222		148.99	69.536	1				54400	6178	37990	38053	59592	59592					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MSMS	OPSCC_40_ClassI_Rep-1	4	568.7877807617188	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45	1	44.901	44.401	45.401	-0.099445								0	0	0	0.01279	1	4235	4235		162.25	60.652	1				54401	6178	37990	38053	59593	59593					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MSMS	OPSCC_40_ClassI_Rep-2	5	568.7840576171875	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.112	1	44.86	44.36	45.36	-0.25252								0	0	0	0.0012084	1	4240	4240		190.52	84.103	1				54402	6178	37990	38053	59594	59594					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MSMS	OPSCC_40_ClassI_Rep-2	5	568.787109375	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.187	1	44.934	44.434	45.434	-0.25252								0	0	0	0.014459	1	4251	4251		141.52	56.605	1				54403	6178	37990	38053	59595	59595					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MSMS	OPSCC_40_ClassI_Rep-3	6	568.7857666015625	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.109	1	44.898	44.398	45.398	-0.21109								0	0	0	0.01279	1	4239	4239		162.25	71.883	1				54404	6178	37990	38053	59596	59596					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MSMS	OPSCC_40_ClassI_Rep-3	6	568.7880249023438	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.193	1	44.982	44.482	45.482	-0.21109								0	0	0	0.016409	1	4252	4252		136.27	48.514	1				54405	6178	37990	38053	59597	59597					-0.00017248021754312504
NLDSQRLQY	9	Unmodified	_NLDSQRLQY_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MSMS	OPSCC_40_ClassI_Rep-3	6	568.7869262695312	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.234	1	45.023	44.523	45.523	-0.21109								0	0	0	0.022316	1	4259	4259		127.46	36.685	1				54406	6178	37990	38053	59598	59598					-0.00017248021754312504
NLDSTTVAV	9	Unmodified	_NLDSTTVAV_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2410583496094	2	460.24019	918.465826	-0.29239	-0.00013457	0.32212	0.00014825	0.02973	1.3683E-05	460.2402288632009	54.351	1.2764	54.351	54.076	55.353	0					88	36	4	0	0	0	0.033448	3	5925	5925;5937;5948		138.83	59.113	1	5893600			54407	16159	37991	38054	59599;59600;59601	59599					0.0033318441827532297
NLDSTTVAV	9	Unmodified	_NLDSTTVAV_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2407531738281	2	460.24019	918.465826	0.097271	4.4768E-05	0.056106	2.5822E-05	0.15338	7.059E-05	460.2401100784044	54.472	1.1815	54.321	54.051	55.232	-0.15036					74	33	4	0	0	0	0.016871	3	5921	5921;5932;5945		152.47	72.758	1	5262500			54408	16159	37991	38054	59602;59603;59604	59602					0.0033318441827532297
NLDSTTVAV	9	Unmodified	_NLDSTTVAV_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2403259277344	2	460.24019	918.465826	1.0865	0.00050007	-1.0647	-0.00049001	0.021865	1.0063E-05	460.23961409522815	54.189	1.1422	54.287	53.973	55.116	0.098015					73	32	4	0	0	0	0.016871	3	5846	5822;5832;5846		152.47	62.101	1	6694300			54409	16159	37991	38054	59605;59606;59607	59607					0.0033318441827532297
NLDSTTVAV	9	Unmodified	_NLDSTTVAV_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2401123046875	2	460.24019	918.465826	0.9222	0.00042443	-1.0547	-0.00048542	-0.1325	-6.0982E-05	460.23952131963125	54.612	0.81501	54.406	54.051	54.866	-0.20613					46	21	3	0	0	0	0.082191	1	5801	5801		116.9	18.274	1	1667100			54410	16159	37991	38054	59608	59608					0.0033318441827532297
NLDSTTVAV	9	Unmodified	_NLDSTTVAV_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	460.24019	918.465826	-0.35583	-0.00016377	0.076747	3.5322E-05	-0.27908	-0.00012845	460.24010637008183	54.517	0.64713	54.371	54.077	54.724	-0.14609	0.0096966	0.0003164	NaN	152.47	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1221100			54411	16159	37991	38054							0.0033318441827532297
NLDSTTVAV	9	Unmodified	_NLDSTTVAV_					0	0	0		ENST00000527662.5_1_1:201453843-201459740:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000527662.5_1_1:201453843-201459740:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	460.24019	918.465826	-0.10551	-4.8559E-05	-0.2455	-0.00011299	-0.351	-0.00016155	460.23999356101984	54.662	0.77705	54.431	54.15	54.927	-0.23087	0.069866	1.978E-05	NaN	152.47	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1469700			54412	16159	37991	38054							0.0033318441827532297
NLDVIKHDE	9	Unmodified	_NLDVIKHDE_					0	0	0			REV__ERCC3|p.D475H|1|0.28|ENSG00000163161|chr2:127280551-127280551|C/G|missense_variant	REV__ERCC3|p.D475H|1|0.28|ENSG00000163161|chr2:127280551-127280551|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.3240966796875	2	541.77747	1081.54039	-0.95286	-0.00051624	0.95158	0.00051554	-0.0012795	-6.932E-07	542.2796282820341	60.245	0.19164	60.045	59.901	60.093	-0.20016					6	4	2	0	0	0	0.024405	1	6876	6876		27.882	3.6795	1	32691	+		54413	36011	37992	38055	59609	59609					0.0028794722966267727
NLDYENPQ	8	Unmodified	_NLDYENPQ_					0	0	0			REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF	REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2955017089844	2	496.719621	991.42469	0.46095	0.00022896	2.8907	0.0014359	3.3516	0.0016648	496.72088509221277	40.663	0.60134	40.663	40.414	41.016	0					32	16	3	0	0	0	0.027866	1	3638	3638		56.721	7.2795	1	390520	+		54414	26386	37993	38056	59610	59610					-0.07136576621189761
NLEAQVADI	9	Unmodified	_NLEAQVADI_					0	0	0		CON__A2VCT4	CON__A2VCT4	CON__A2VCT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.3155517578125	2	486.753464	971.492375	-0.71762	-0.0003493	1.3822	0.00067281	0.66463	0.00032351	486.75408762530594	70.022	0.60135	70.035	69.503	70.104	0.012421					20	14	2	0	0	0	0.024418	1	8366	8366		37.812	14.769	1	405340		+	54415	480	37994	38057	59611	59611					0.005488733096171927
NLEARKTK	8	Unmodified	_NLEARKTK_					0	0	0		nc|ENSG00000113580|P04150-16|NR3C1;nc|ENSG00000113580|P04150-15|NR3C1;nc|ENSG00000113580|P04150-14|NR3C1;nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1	nc|ENSG00000113580|P04150-16|NR3C1	nc|ENSG00000113580|P04150-16|NR3C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.8001403808594	2	480.285266	958.555979	-0.54944	-0.00026389	-0.72757	-0.00034944	-1.277	-0.00061333	480.2847564352976	27.152	0.29034	26.984	26.723	27.013	-0.16816					8	6	2	0	0	0	0.027866	1	1456	1456		62.107	0	1	159400			54416	3306	37995	38058	59612	59612					0.07504278537373921
NLEDAMEEV	9	Oxidation (M)	_NLEDAM(Oxidation (M))EEV_		NLEDAM(1)EEV		NLEDAM(82)EEV	0	0	1		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7855224609375	2	533.223879	1064.43321	-0.55488	-0.00029587	-1.0109	-0.00053902	-1.5657	-0.00083489	533.2239198152289	45.717	0.31027	45.761	45.512	45.822	0.043877					18	8	3	0	0	0	0.023454	1	4414	4414		82.241	15.811	1	556590			54417	7236	37996	38059	59613	59613		303			-0.09643390766882476
NLEEMPLQAMS	11	Unmodified	_NLEEMPLQAMS_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	631.2763671875	2	631.791406	1261.56826	0.35214	0.00022248	3.4866	0.0022028	3.8387	0.0024253	631.7935964840468	59.214	0.16129	58.973	58.895	59.056	-0.24165					5	3	2	0	0	0	0.024751	1	6531	6531		41.08	9.4458	1	65772	+		54418	28299	37997	38060	59614	59614					-0.052062338967743926
NLEFLQEQF	9	Unmodified	_NLEFLQEQF_					0	0	0		nc|ENSG00000204463|P46379|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609004-31609235:-|nuORF	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.3338623046875	2	584.287671	1166.56079	0.23434	0.00013692	0.65106	0.00038041	0.8854	0.00051733	584.2884220940347	84.789	0.58566	84.586	84.294	84.88	-0.20329					19	13	2	0	0	0	0.024447	1	10276	10276		32.812	8.2932	1	282770			54419	18661	37998	38061	59615	59615					-0.015828821105060342
NLEKSRKLS	9	Unmodified	_NLEKSRKLS_					0	0	0			REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2845458984375	2	537.81693	1073.61931	-0.36315	-0.00019531	-1.1879	-0.00063887	-1.551	-0.00083418	537.8161888826786	50.793	0.33264	50.612	50.39	50.723	-0.18071					11	8	2	0	0	0	0.024418	1	5189	5189		54.776	13.998	1	167270	+		54420	25369	37999	38062	59616	59616					0.08544219254622476
NLEKSRKLS	9	Unmodified	_NLEKSRKLS_					0	0	0			REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.81693	1073.61931	-0.045263	-2.4343E-05	-1.1676	-0.00062796	-1.2129	-0.0006523	537.8162929183611	50.718	0.33357	50.606	50.416	50.749	-0.11163	-0.015868	0.00029121	NaN	45.972	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170240	+		54421	25369	37999	38062							0.08544219254622476
NLEKSRKLS	9	Unmodified	_NLEKSRKLS_					0	0	0			REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.81693	1073.61931	-0.040567	-2.1817E-05	-1.7311	-0.000931	-1.7716	-0.00095282	537.8160186367443	50.924	0.33624	50.648	50.48	50.816	-0.27643	0.025637	-0.00031488	NaN	45.972	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185360	+		54422	25369	37999	38062							0.08544219254622476
NLEKVVVT	8	Unmodified	_NLEKVVVT_					0	0	0		ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	ENSG00000141570|ENST00000269385|CBX8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.25225830078125	2	451.271293	900.528032	0.80182	0.00036184	-0.51234	-0.0002312	0.28948	0.00013063	451.27096489302227	74.796	0.48653	74.796	74.509	74.995	0					19	11	2	0	0	0	0.027866	1	9167	9167		25.45	1.2474	1	214560			54423	5506	38000	38063	59617	59617					0.07378955557294375
NLELQSESLK	10	Unmodified	_NLELQSESLK_					0	0	0			REV__ENSG00000147168|ENST00000374202|IL2RG	REV__ENSG00000147168|ENST00000374202|IL2RG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.7911987304688	2	580.81151	1159.60847	-0.0095671	-5.5567E-06	4.034	0.002343	4.0244	0.0023374	580.8137952329604	41.967	0.44324	41.993	41.709	42.152	0.026012					18	12	2	0	0	0	0.03519	1	3734	3734		60.118	10.582	1	99490	+		54424	24535	38001	38064	59618	59618					0.03504772089650032
NLELRNLTV	9	Unmodified	_NLELRNLTV_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3118896484375	2	536.31148	1070.60841	0.51774	0.00027767	0.39697	0.0002129	0.91471	0.00049057	536.3117782675039	59.287	1.6514	59.287	58.714	60.366	0					121	44	4	0	0	0	0.40693	1	6763	6763		65.465	1.9315	1	11726000			54425	3658	38002	38065	59619	59619					0.07592816880310238
NLEMPITD	8	Unmodified	_NLEMPITD_					0	0	0		ENST00000532277.5_2_11:82639847-82639886:+|nuORF	ENST00000532277.5_2_11:82639847-82639886:+|nuORF	ENST00000532277.5_2_11:82639847-82639886:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2530822753906	2	466.723318	931.432083	-0.83185	-0.00038825	-0.71611	-0.00033422	-1.548	-0.00072247	466.7228690512833	26.703	0.32666	26.54	26.382	26.708	-0.16331					11	7	2	0	0	0	0.027866	1	1371	1371		30.504	0	1	47016			54426	16285	38003	38066	59620	59620					-0.03637560345111979
NLENELELT	9	Unmodified	_NLENELELT_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.8152465820312	2	537.769311	1073.52407	-0.90728	-0.00048791	-0.48314	-0.00025982	-1.3904	-0.00074773	537.769018332456	76.939	0.16362	76.711	76.567	76.731	-0.22843					5	3	2	0	0	0	0.024541	1	9450	9450		26.693	0	1	66531			54427	3658	38004	38067	59621	59621					-0.009751787271170542
NLEQEIADLT	10	Unmodified	_NLEQEIADLT_					0	0	0		ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.2860717773438	2	573.287868	1144.56118	0.6659	0.00038175	-3.0293	-0.0017367	-2.3634	-0.0013549	573.2861170573505	64.113	0.76914	64.159	63.794	64.563	0.045502					47	20	3	0	0	0	0.94316	1	7455	7455		51.193	1.7511	1	1356400			54428	2957	38005	38068	59622	59622					-0.005315071813356553
NLERFLPAI	9	Unmodified	_NLERFLPAI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.8109130859375	2	536.811116	1071.60768	-1.0197	-0.0005474	-0.48383	-0.00025972	-1.5036	-0.00080712	536.8107252710977	29.159	0.91227	29.163	28.839	29.751	0.0031376					54	22	4	0	0	0	0.53979	1	1744	1744		56.721	3.7844	1	2255200	+		54429	22560	38006	38069	59623	59623					0.07474022231258459
NLESAKSPK	9	Unmodified	_NLESAKSPK_					0	0	0			REV__ENSG00000172469|ENST00000358812|MANEA	REV__ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.77899169921875	2	487.269281	972.52401	-0.37486	-0.00018266	0.24727	0.00012049	-0.12758	-6.2166E-05	487.269211782167	56.809	0.43023	56.809	56.608	57.038	0					28	12	3	0	0	0	0.024427	1	6351	6351		42.396	3.59	1	364640	+		54430	26674	38007	38070	59624	59624					0.03664866063570571
NLESKWPI	8	Unmodified	_NLESKWPI_					0	0	0		nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;nc|ENSG00000139364|Q14DG7-3|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79803466796875	2	493.768917	985.523281	-0.34708	-0.00017138	1.7281	0.00085329	1.381	0.00068192	493.7696766677989	60.048	1.6021	59.848	59.577	61.179	-0.20016					65	42	2	0	0	0	0.027866	1	7046	7046		26.796	4.8362	1	2511900			54431	5330	38008	38071	59625	59625					0.029940714145254788
NLESRGVEV	9	Unmodified	_NLESRGVEV_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.3216247558594	2	501.764363	1001.51417	-0.38054	-0.00019094	-3.3131	-0.0016624	-3.6936	-0.0018533	501.7624656566577	63.268	0.95416	63.022	62.387	63.341	-0.24669					34	24	2	0	0	0	0.023239	1	7400	7400		54.776	0	1	355070			54432	10219	38009	38072	59626	59626					0.013476780582095671
NLESSFLPI	9	Unmodified	_NLESSFLPI_					0	0	0			REV__ENST00000518333.1_1_8:124821116-124824941:+|nuORF	REV__ENST00000518333.1_1_8:124821116-124824941:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.8185729980469	2	510.274032	1018.53351	0.15016	7.6621E-05	3.6043	0.0018392	3.7545	0.0019158	510.2754329326473	74.939	1.011	74.663	74.089	75.1	-0.27573					55	23	3	0	0	0	0.023635	1	8855	8855		56.721	0	1	571590	+		54433	27050	38010	38073	59627	59627					0.024986343491150365
NLESWCSVF	9	Unmodified	_NLESWCSVF_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.8093872070312	2	542.742042	1083.46953	-1.6926	-0.00091866	0.23821	0.00012928	-1.4544	-0.00078937	542.7421227817487	29.141	0.46571	29.141	28.904	29.37	0					18	11	2	0	0	0	0.024447	1	1767	1767		40.778	5.1599	1	160320	+		54434	28479	38011	38074	59628	59628					-0.06886469079495328
NLETRNLD	8	Unmodified	_NLETRNLD_					0	0	0		ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2819519042969	2	487.748713	973.482873	0.33592	0.00016384	3.7078	0.0018085	4.0437	0.0019723	487.75038294050495	80.548	0.41647	80.342	80.092	80.508	-0.20633					21	9	3	0	0	0	0.027866	1	9687	9687		45.952	8.7928	1	176340			54435	5343	38012	38075	59629	59629					-0.00492894975911895
NLEWLARA	8	Unmodified	_NLEWLARA_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1;PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.292236328125	2	486.766709	971.518865	-0.73017	-0.00035542	-1.3078	-0.00063659	-2.038	-0.00099201	486.7657790163219	82.1	0.50439	82.126	81.94	82.444	0.025711					19	11	2	0	0	0	0.027866	1	10181	10181		37.159	1.5408	1	109060			54436	19003;8399	38013	38076	59630	59630					0.03196606991605222
NLEWLSSLW	9	Unmodified	_NLEWLSSLW_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.281982421875	2	574.292756	1146.57096	-0.23601	-0.00013554	0.086782	4.9838E-05	-0.14923	-8.57E-05	574.2924847769804	88.901	0.62984	88.77	88.486	89.115	-0.13136					32	14	3	0	0	0	0.024457	1	10860	10860		37.159	1.5408	1	323220			54437	10755	38014	38077	59631	59631					0.003537256147183143
NLEWVVVL	8	Unmodified	_NLEWVVVL_					0	0	0			REV__ENSG00000110756|ENST00000349215|HPS5	REV__ENSG00000110756|ENST00000349215|HPS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2823486328125	2	486.28166	970.548768	-1.1066	-0.00053812	1.5367	0.00074727	0.43009	0.00020915	486.28221897068875	81.367	0.61026	81.391	81.007	81.617	0.023911					25	14	2	0	0	0	0.027866	1	10016	10016		33.516	4.366	1	300440	+		54438	21872	38015	38078	59632	59632					0.06231545936952898
NLFEKYLERRG	11	Unmodified	_NLFEKYLERRG_					0	0	0		nc|ENSG00000073150|Q96RD6-2|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2;ENSG00000073150|ENST00000395842|PANX2;PANX2|p.A385Yfs*124|1|0.13|ENSG00000073150|chr22:50177863-50177864|-/TTATTTT|frameshift_variant	nc|ENSG00000073150|Q96RD6-2|PANX2	nc|ENSG00000073150|Q96RD6-2|PANX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2603454589844	3	475.593009	1423.7572	-0.44824	-0.00021318	-0.034541	-1.6427E-05	-0.48278	-0.00022961	475.59279975341946	43.925	0.56966	43.781	43.461	44.031	-0.14471					25	15	2	0	0	0	0.024834	1	4106	4106		8.7993	0	1	151290			54439	1502	38016	38079	59633	59633					0.06226922783230293
NLFGLTQDL	9	Unmodified	_NLFGLTQDL_					0	0	0			REV__ENST00000602461.1_1_X:45629483-45629546:-|nuORF	REV__ENST00000602461.1_1_X:45629483-45629546:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.77093505859375	2	510.771657	1019.52876	0.13155	6.7194E-05	-0.46793	-0.000239	-0.33637	-0.00017181	510.7714249650101	84.635	1.4073	84.635	84.381	85.789	0					79	33	3	0	0	0	0.086035	1	10572	10572		115.49	3.3868	1	14610000	+		54440	35873	38017	38080	59634	59634					0.019777502063448082
NLFHLILD	8	Unmodified	_NLFHLILD_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2925720214844	2	492.779285	983.544017	-0.039352	-1.9392E-05	3.7446	0.0018453	3.7053	0.0018259	492.78105899224624	78.817	0.99948	78.817	78.573	79.573	0					36	23	2	0	0	0	0.027866	1	9858	9858		63.306	7.8021	1	431210	+		54441	19683	38018	38081	59635	59635					0.051586617941893564
NLFHLILD	8	Unmodified	_NLFHLILD_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.779285	983.544017	-0.20855	-0.00010277	0.66302	0.00032672	0.45446	0.00022395	492.77946028207487	78.901	0.51399	78.646	78.384	78.898	-0.25471	-0.021235	-0.00036628	NaN	63.306	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262860	+		54442	19683	38018	38081							0.051586617941893564
NLFHLILD	8	Unmodified	_NLFHLILD_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.779285	983.544017	0.30859	0.00015207	1.1402	0.00056186	1.4488	0.00071393	492.77920638884524	78.829	0.63623	78.598	78.346	78.982	-0.23141	-0.069253	0.000104	NaN	63.306	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266190	+		54443	19683	38018	38081							0.051586617941893564
NLFHLILD	8	Unmodified	_NLFHLILD_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.779285	983.544017	0.18778	9.2534E-05	0.037202	1.8332E-05	0.22498	0.00011087	492.77910245801485	78.764	0.51385	78.608	78.383	78.897	-0.15591	-0.059244	-0.00098306	NaN	63.306	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298450	+		54444	19683	38018	38081							0.051586617941893564
NLFIILEVD	9	Unmodified	_NLFIILEVD_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2882080078125	2	538.305332	1074.59611	-0.39404	-0.00021211	-0.30028	-0.00016164	-0.69432	-0.00037376	538.3052716518212	89.27	1.2465	89.285	88.838	90.084	0.015907					60	29	3	0	0	0	0.024381	1	11245	11245		29.15	0	1	843740	+		54445	21909	38019	38082	59636	59636					0.06179780417301117
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167114257812	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.5973	3	10870	10870;10992;11076		52.937	7.2698	1	3529900			54446	4110	38020	38083	59637;59638;59639	59637					0.08222889028479585
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.316650390625	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.74711	3	10873	10873;10944;10980		42.864	5.0803	1	3438300			54447	4110	38020	38083	59640;59641;59642	59640					0.08222889028479585
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.317138671875	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.77768	2	11350	11229;11350		40.778	2.9666	1	11601000			54448	4110	38020	38083	59643;59644	59644					0.08222889028479585
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.70156	2	11127	11053;11127		45.972	5.9141	1	15621000			54449	4110	38020	38083	59645;59646	59646					0.08222889028479585
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	0.87448	1	10473	10473		34.173	0.25091	1	4888900			54450	4110	38020	38083	59647	59647					0.08222889028479585
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3167724609375	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.89441	1	11007	11007		32.812	0	1	17400000			54451	4110	38020	38083	59648	59648					0.08222889028479585
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3164672851562	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	0.6504	2	10737	10639;10737		49.442	5.3247	1	5204600			54452	4110	38020	38083	59649;59650	59650					0.08222889028479585
NLFKQVDLI	9	Unmodified	_NLFKQVDLI_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4;GTF3C4|p.W574Lfs*4|1|0.2|ENSG00000125484|chr9:132679334-132679335|-/T|frameshift_variant	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.316162109375	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.43628	6	11126	10908;10980;11053;11114;11126;11229		63.534	8.9351	1	17068000			54453	4110	38020	38083	59651;59652;59653;59654;59655;59656	59655					0.08222889028479585
NLFLCNICF	9	Unmodified	_NLFLCNICF_					0	0	0		ENST00000427378.1_1_7:134813580-134814228:+|nuORF	ENST00000427378.1_1_7:134813580-134814228:+|nuORF	ENST00000427378.1_1_7:134813580-134814228:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.82373046875	2	543.759181	1085.50381	-0.4547	-0.00024725	3.8904	0.0021154	3.4357	0.0018682	544.2622058708506	101.78	0.35686	101.6	101.38	101.74	-0.17178					10	7	2	0	0	0	0.024354	1	12616	12616		47.916	1.9636	1	26991			54454	14106	38021	38084	59657	59657					-0.03552344192257806
NLFLSLLID	9	Unmodified	_NLFLSLLID_					0	0	0			REV__nc|ENSG00000204920|Q12901-2|ZNF155	REV__nc|ENSG00000204920|Q12901-2|ZNF155	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3235473632812	2	524.307875	1046.6012	0.47936	0.00025133	-1.5437	-0.00080936	-1.0643	-0.00055803	524.8088004432116	71.79	0.67869	71.8	71.652	72.331	0.0097733					34	17	3	0	0	0	0.023837	1	8673	8673		54.776	0	1	898880	+		54455	37084	38022	38085	59658	59658					0.07976084279903262
NLFLTHCLI	9	Unmodified	_NLFLTHCLI_					0	0	0		ENST00000457976.1_1_9:93881489-93881789:-|nuORF	ENST00000457976.1_1_9:93881489-93881789:-|nuORF	ENST00000457976.1_1_9:93881489-93881789:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3424682617188	2	537.294245	1072.57394	-1.6565	-0.00089005	-2.4945	-0.0013403	-4.151	-0.0022303	537.2933209209481	27.125	0.43257	27.206	27.031	27.463	0.081293					15	11	2	0	0	0	0.024466	1	1378	1378		25.45	0	1	86985			54456	14619	38023	38086	59659	59659					0.04055277467887208
NLFMVEKPS	9	Unmodified	_NLFMVEKPS_					0	0	0			REV__nc|ENSG00000112640|Q14738-3|PPP2R5D;REV__nc|ENSG00000078304|Q13362-3|PPP2R5C	REV__nc|ENSG00000112640|Q14738-3|PPP2R5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.25537109375	2	532.775885	1063.53722	-0.66123	-0.00035229	-0.78349	-0.00041742	-1.4447	-0.00076971	533.2769015990629	40.959	0.307	40.731	40.581	40.888	-0.2278					10	7	2	0	0	0	0.024495	1	3557	3557		42.396	19.354	1	120860	+		54457	22017;36478	38024	38087	59660	59660					0.007989808513002572
NLFNKYPAL	9	Unmodified	_NLFNKYPAL_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2977294921875	2	540.297842	1078.58113	0.24226	0.00013089	-0.25416	-0.00013732	-0.011903	-6.4313E-06	540.2974333049243	64.19	1.4543	64.19	63.772	65.226	0					80	39	3	0	0	0	0.040175	4	7550	7527;7539;7550;7562		133.47	45.773	1	4052600			54458	2372	38025	38088	59661;59662;59663;59664	59663					0.04498333339938654
NLFNKYPAL	9	Unmodified	_NLFNKYPAL_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2974853515625	2	540.297842	1078.58113	-1.0613	-0.00057341	1.0005	0.00054059	-0.060734	-3.2814E-05	540.2981071211306	64.421	1.3452	64.159	63.791	65.136	-0.2626					83	35	3	0	0	0	0.049585	4	7562	7537;7548;7562;7574		128.86	52.087	1	3715600			54459	2372	38025	38088	59665;59666;59667;59668	59667					0.04498333339938654
NLFNKYPAL	9	Unmodified	_NLFNKYPAL_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2974243164062	2	540.297842	1078.58113	0.05735	3.0986E-05	-0.27238	-0.00014717	-0.21503	-0.00011618	540.2974328978036	64.232	1.2959	64.278	63.83	65.126	0.045509					75	34	3	0	0	0	0.074956	3	7460	7460;7471;7483		119.56	37.252	1	3789500			54460	2372	38025	38088	59669;59670;59671	59669					0.04498333339938654
NLFNKYPAL	9	Unmodified	_NLFNKYPAL_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.297842	1078.58113	-0.66889	-0.0003614	0.32968	0.00017813	-0.33921	-0.00018328	540.2978981512382	64.484	0.8251	64.249	63.943	64.768	-0.2345	0.027176	0.00010767	NaN	133.47	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523600			54461	2372	38025	38088							0.04498333339938654
NLFNKYPAL	9	Unmodified	_NLFNKYPAL_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.297842	1078.58113	-0.37979	-0.0002052	-0.13186	-7.1242E-05	-0.51165	-0.00027644	540.2977777049988	64.406	0.94775	64.203	63.911	64.859	-0.20254	-0.01862	-0.00039106	NaN	133.47	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605510			54462	2372	38025	38088							0.04498333339938654
NLFNKYPAL	9	Unmodified	_NLFNKYPAL_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.297842	1078.58113	-1.3922	-0.00075222	1.0628	0.00057421	-0.32947	-0.00017801	540.2984068180274	64.509	0.66776	64.253	63.836	64.504	-0.25563	0.031292	0.00089984	NaN	133.47	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630330			54463	2372	38025	38088							0.04498333339938654
NLFNSKGNEA	10	Unmodified	_NLFNSKGNEA_					0	0	0			REV__B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	REV__B2M|p.L74Cfs*29|1|0.12|ENSG00000166710|chr15:44715575-44715575|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3236083984375	2	547.26727	1092.51999	-0.87979	-0.00048148	-1.527	-0.00083567	-2.4068	-0.0013172	547.2682277100233	75.029	0.43542	75.029	74.796	75.232	0					14	10	2	0	0	0	0.03519	1	9198	9198		67.494	19.836	1	113780	+		54464	19194	38026	38089	59672	59672					-0.022572234301151184
NLFPTISVAP	10	Unmodified	_NLFPTISVAP_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8223876953125	2	529.797675	1057.5808	-0.47715	-0.00025279	-2.2136	-0.0011727	-2.6907	-0.0014255	529.7963795540801	55.196	0.47918	55.046	54.82	55.299	-0.15036					26	13	3	0	0	0	0.03519	1	6047	6047		49.442	16.691	1	649770			54465	4925	38027	38090	59673	59673					0.054309136201027286
NLFQHLCNL	9	Unmodified	_NLFQHLCNL_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;USP34|p.C1530Lfs*16|1|0.33|ENSG00000115464|chr2:61288837-61288838|-/A|frameshift_variant	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8246459960938	2	551.279126	1100.5437	0.93167	0.00051361	0.85708	0.00047249	1.7887	0.0009861	551.2794930255037	36.172	0.60685	35.974	35.809	36.416	-0.19829					27	15	3	0	0	0	0.024457	1	2843	2843		37.159	12.956	1	440720			54466	3450	38028	38091	59674	59674					-0.0025508119731512124
NLFRHSEL	8	Unmodified	_NLFRHSEL_					0	0	0		ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1;ENST00000490299.5_1_1:213246316-213302929:+|nuORF	ENSG00000136643|ENST00000366960|RPS6KC1	ENSG00000136643|ENST00000366960|RPS6KC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7664489746094	2	508.269616	1014.52468	-0.57119	-0.00029032	2.9586	0.0015038	2.3874	0.0012134	508.2713739969273	36.245	1.3907	36.283	35.453	36.843	0.038044					103	37	5	0	0	0	0.027866	1	2790	2790		79.451	28.116	1	6901000			54467	5034	38029	38092	59675	59675					0.017997055032765275
NLFSFVVPF	9	Unmodified	_NLFSFVVPF_					0	0	0			REV__GABRB2|p.F502L|1|0.1|ENSG00000145864|chr5:161294114-161294114|G/C|missense_variant	REV__GABRB2|p.F502L|1|0.1|ENSG00000145864|chr5:161294114-161294114|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.289794921875	2	535.289485	1068.56442	0.41471	0.00022199	-1.5303	-0.00081913	-1.1155	-0.00059714	535.2882883737558	106.75	0.7101	106.75	106.42	107.13	0					35	22	2	0	0	0	0.52323	1	13712	13712		57.811	6.4758	1	149090	+		54468	36057	38030	38093	59676	59676					0.032878324539979076
NLFSFVVPF	9	Unmodified	_NLFSFVVPF_					0	0	0			REV__GABRB2|p.F502L|1|0.1|ENSG00000145864|chr5:161294114-161294114|G/C|missense_variant	REV__GABRB2|p.F502L|1|0.1|ENSG00000145864|chr5:161294114-161294114|G/C|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	535.289485	1068.56442	0.41471	0.00022199	-1.5303	-0.00081913	-1.1155	-0.00059714	535.2882883737558	106.75	0.7101	106.75	106.42	107.13	0	-0.010442	-0.0004514	NaN	57.811	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149090	+		54469	36057	38030	38093							0.032878324539979076
NLFSFVVPF	9	Unmodified	_NLFSFVVPF_					0	0	0			REV__GABRB2|p.F502L|1|0.1|ENSG00000145864|chr5:161294114-161294114|G/C|missense_variant	REV__GABRB2|p.F502L|1|0.1|ENSG00000145864|chr5:161294114-161294114|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.289485	1068.56442	-0.32642	-0.00017473	-0.7617	-0.00040773	-1.0881	-0.00058246	535.2887063099163	106.73	0.5858	106.73	106.44	107.03	-0.003479	-0.035341	0.0003714	NaN	57.811	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138390	+		54470	36057	38030	38093							0.032878324539979076
NLFSWEEL	8	Unmodified	_NLFSWEEL_					0	0	0			REV__ZNF586|p.L31F|1|0.04|ENSG00000083828|chr19:57790328-57790328|C/T|missense_variant	REV__ZNF586|p.L31F|1|0.04|ENSG00000083828|chr19:57790328-57790328|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.8109130859375	2	519.250557	1036.48656	-0.58597	-0.00030427	0.80252	0.00041671	0.21655	0.00011244	519.2500196990949	61.048	0.78196	61.048	60.473	61.255	0					34	20	3	0	0	0	0.027866	1	6975	6975		44.117	12.162	1	330280	+		54471	37811	38031	38094	59677	59677					-0.03022225202039408
NLFSWEEL	8	Unmodified	_NLFSWEEL_					0	0	0			REV__ZNF586|p.L31F|1|0.04|ENSG00000083828|chr19:57790328-57790328|C/T|missense_variant	REV__ZNF586|p.L31F|1|0.04|ENSG00000083828|chr19:57790328-57790328|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.250557	1036.48656	-0.22457	-0.00011661	-0.73273	-0.00038047	-0.95731	-0.00049708	519.2498978038017	61.326	0.67416	61.099	60.821	61.495	-0.22663	0.028231	-0.00021605	NaN	68.787	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366940	+		54472	37811	38031	38094							-0.03022225202039408
NLFSWEEL	8	Unmodified	_NLFSWEEL_					0	0	0			REV__ZNF586|p.L31F|1|0.04|ENSG00000083828|chr19:57790328-57790328|C/T|missense_variant	REV__ZNF586|p.L31F|1|0.04|ENSG00000083828|chr19:57790328-57790328|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.250557	1036.48656	-0.65072	-0.00033789	-0.49193	-0.00025544	-1.1426	-0.00059332	519.2500903240498	60.995	0.72258	61.066	60.79	61.512	0.071129	-0.0048581	3.4022E-05	NaN	68.787	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464130	+		54473	37811	38031	38094							-0.03022225202039408
NLFTLLDL	8	Unmodified	_NLFTLLDL_					0	0	0		ENST00000367941.6_1_6:132781444-132781717:-|nuORF	ENST00000367941.6_1_6:132781444-132781717:-|nuORF	ENST00000367941.6_1_6:132781444-132781717:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7738037109375	2	474.773668	947.532783	1.1535	0.00054764	-1.3124	-0.00062307	-0.15888	-7.5433E-05	474.77297582327463	99.198	1.0987	99.198	98.647	99.746	0					64	24	3	0	0	0	0.96719	1	12681	12681		42.474	0	1	2194500			54474	12877	38032	38095	59678	59678					0.056918397000458754
NLFTLLDL	8	Unmodified	_NLFTLLDL_					0	0	0		ENST00000367941.6_1_6:132781444-132781717:-|nuORF	ENST00000367941.6_1_6:132781444-132781717:-|nuORF	ENST00000367941.6_1_6:132781444-132781717:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.77362060546875	2	474.773668	947.532783	0.72497	0.0003442	-0.9589	-0.00045526	-0.23393	-0.00011106	474.77314857512465	99.207	1.1754	99.203	98.724	99.899	-0.0038757					63	26	3	0	0	0	0.87148	1	12621	12621		53.351	7.3995	1	2143100			54475	12877	38032	38095	59679	59679					0.056918397000458754
NLFTRLTGL	9	Unmodified	_NLFTRLTGL_					0	0	0			REV__ENSG00000143412|ENST00000368947|ANXA9	REV__ENSG00000143412|ENST00000368947|ANXA9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7682495117188	2	517.803291	1033.59203	-1.0187	-0.00052749	0.006656	3.4465E-06	-1.0121	-0.00052404	517.8031487899221	39.142	0.54279	38.977	38.761	39.304	-0.16459					43	14	4	0	0	0	0.024447	1	3331	3331		49.442	12.282	1	615510	+		54476	24244	38033	38096	59680	59680					0.07657735714224145
NLFVNEKSD	9	Unmodified	_NLFVNEKSD_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2862548828125	2	533.264196	1064.51384	-0.22854	-0.00012187	1.7067	0.00091014	1.4782	0.00078827	533.2656227908045	71.74	0.43885	71.478	71.282	71.72	-0.26199					17	10	2	0	0	0	0.024294	1	8397	8397		29.15	7.1897	1	125740	+		54477	21256	38034	38097	59681	59681					-0.01583741661647764
NLFWVLLL	8	Unmodified	_NLFWVLLL_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7872619628906	2	509.310221	1016.60589	-0.67862	-0.00034563	-4.3903	-0.002236	-5.069	-0.0025817	509.80814725954036	60.663	0.33212	60.45	60.235	60.567	-0.21339					15	8	2	0	0	0	0.027866	1	6930	6930		20.482	4.0087	1	79607	+		54478	25416	38035	38098	59682	59682					0.09825013213344391
NLFYLAQA	8	Unmodified	_NLFYLAQA_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.28448486328125	2	470.25036	938.486168	-0.22617	-0.00010635	-2.5752	-0.001211	-2.8014	-0.0013174	470.24885451898956	43.223	0.47172	43.223	42.932	43.404	0					15	12	2	0	0	0	0.027866	1	4064	4064		26.796	0	1	89832	+		54479	26433	38036	38099	59683	59683					0.01446399868757453
NLFYLAQA	8	Unmodified	_NLFYLAQA_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	470.25036	938.486168	0.075308	3.5413E-05	3.8682	0.001819	3.9435	0.0018544	470.25209444310553	43.091	0.41071	42.979	42.735	43.145	-0.11253	-0.067388	0.00072451	NaN	42.474	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272810	+		54480	26433	38036	38099							0.01446399868757453
NLFYLAQA	8	Unmodified	_NLFYLAQA_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.25036	938.486168	-0.16734	-7.869E-05	4.3507	0.0020459	4.1833	0.0019672	470.2519199558687	43.202	0.41482	42.965	42.759	43.174	-0.23736	-0.08123	0.0011783	NaN	42.474	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224060	+		54481	26433	38036	38099							0.01446399868757453
NLFYLAQA	8	Unmodified	_NLFYLAQA_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.25036	938.486168	-1.0278	-0.00048333	4.0389	0.0018993	3.0111	0.001416	470.25249274677003	43.244	0.48264	43.018	42.793	43.275	-0.22597	-0.028294	0.00088507	NaN	42.474	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294760	+		54482	26433	38036	38099							0.01446399868757453
NLFYNKGVEI	10	Unmodified	_NLFYNKGVEI_					0	0	0			REV__ENST00000233055.8_1_2:224741082-224741151:-|nuORF	REV__ENST00000233055.8_1_2:224741082-224741151:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	598.818603515625	2	598.819138	1195.62372	-1.3413	-0.00080322	1.0212	0.00061153	-0.32011	-0.00019169	598.8195673752847	74.187	1.3247	74.197	73.924	75.249	0.0096588					75	31	3	0	0	0	0.75651	1	9009	9009		63.534	5.3039	1	1556600	+		54483	29414	38037	38100	59684	59684					0.03373683677546069
NLGCHLAEV	9	Carbamidomethyl (C)	_NLGC(Carbamidomethyl (C))HLAEV_	NLGC(1)HLAEV		NLGC(100)HLAEV		0	1	0			REV__ENSG00000177570|ENST00000314727|SAMD12	REV__ENSG00000177570|ENST00000314727|SAMD12	MSMS	OPSCC_39_ClassI_Rep-3	3	506.74530029296875	2	506.747659	1011.48076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.879	1	81.905	81.405	82.405	0.025711								0	0	0	0.064204	1	10135	10135		102.77	31.957	1		+		54484	27125	38038	38101	59685	59685	359				-0.024516469853551826
NLGDVNTH	8	Unmodified	_NLGDVNTH_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2107238769531	2	435.209224	868.403895	0.39478	0.00017181	1.2678	0.00055174	1.6625	0.00072356	435.20913766699374	99.237	1.1755	99.068	98.461	99.637	-0.16862					64	27	3	0	0	0	1.0574	1	12287	12287		24.519	0.31644	1	223920	+		54485	24364	38039	38102	59686	59686					-0.035571222101793865
NLGENPDFHR	10	Unmodified	_NLGENPDFHR_					0	0	0		ENST00000288111.11_1_14:24768318-24768879:-|nuORF	ENST00000288111.11_1_14:24768318-24768879:-|nuORF	ENST00000288111.11_1_14:24768318-24768879:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.191504	1197.55268	0.2239	8.9601E-05	0.99646	0.00039878	1.2204	0.00048838	400.19168922739027	21.872	0.52246	21.791	21.554	22.076	-0.081459					15	10	2	0	0	0	0.03519	1	739	739		37.508	0	1	23274			54486	11770	38040	38103	59687	59687					-0.03819016307284073
NLGFLIPKP	9	Unmodified	_NLGFLIPKP_					0	0	0			REV__nc|ENSG00000133302|Q9BQI6-2|SLF1	REV__nc|ENSG00000133302|Q9BQI6-2|SLF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7781066894531	2	499.805303	997.596052	0.31021	0.00015504	-3.8702	-0.0019343	-3.56	-0.0017793	499.8030470237269	69.811	0.44598	69.811	69.547	69.993	0					24	10	3	0	0	0	0.024381	1	8383	8383		29.15	0	1	519470	+		54487	36670	38041	38104	59688	59688					0.09715825207933904
NLGFVCDAQAK	11	Unmodified	_NLGFVCDAQAK_					0	0	0		ENST00000433381.5_1_3:50386870-50387365:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENST00000480296.5_1_3:50386924-50387365:-|nuORF;ENST00000461020.5_1_3:50386924-50387491:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000433381.5_1_3:50386870-50387365:-|nuORF	ENST00000433381.5_1_3:50386870-50387365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	582.3369140625	2	583.287148	1164.55974	-1.0586	-0.00061746	4.2155	0.0024588	3.1569	0.0018414	583.2888106443838	54.01	0.66644	53.863	53.456	54.123	-0.14723					43	18	4	0	0	0	0.024759	1	5849	5849		40.058	7.2458	1	288420			54488	3359	38042	38105	59689	59689					-0.01595419751083682
NLGKEPLD	8	Unmodified	_NLGKEPLD_					0	0	0		ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2716064453125	2	443.23745	884.460347	-0.015782	-6.995E-06	0.084371	3.7396E-05	0.068589	3.0401E-05	443.23737451193784	46.161	0.54316	46.213	45.965	46.509	0.051395					25	15	2	0	0	0	0.027866	1	4526	4526		21.96	0	1	450830			54489	7989	38043	38106	59690	59690					0.013495056264787308
NLGKLKVK	8	Unmodified	_NLGKLKVK_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.75885009765625	2	450.30547	898.596387	-0.99209	-0.00044674	0.11435	5.1492E-05	-0.87774	-0.00039525	450.30533605227	44.42	0.60121	44.275	44.031	44.632	-0.14471					29	17	2	0	0	0	0.027866	1	4268	4268		60.294	7.9948	1	719540			54490	1119	38044	38107	59691	59691					0.14303244927793912
NLGLKKEPN	9	Unmodified	_NLGLKKEPN_					0	0	0		nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;ENSG00000166311|ENST00000342245|SMPD1	nc|ENSG00000166311|P17405-3|SMPD1	nc|ENSG00000166311|P17405-3|SMPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3196105957031	2	506.792924	1011.57129	-0.53505	-0.00027116	3.6964	0.0018733	3.1614	0.0016022	507.2930600488108	52.736	0.47027	52.736	52.431	52.901	0					16	11	2	0	0	0	0.024436	1	5690	5690		16.473	0	1	661180			54491	7538	38045	38108	59692	59692					0.06597145334569632
NLGLKKEPN	9	Unmodified	_NLGLKKEPN_					0	0	0		nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1;ENSG00000166311|ENST00000342245|SMPD1	nc|ENSG00000166311|P17405-3|SMPD1	nc|ENSG00000166311|P17405-3|SMPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3196105957031	2	506.792924	1011.57129	-0.48907	-0.00024786	0.15164	7.6849E-05	-0.33743	-0.00017101	506.79314941178524	53.082	0.93437	53.082	52.864	53.799	0					40	25	3	0	0	0	0.024436	1	5690	5690		16.473	0	1	843020			54492	7538	38045	38108	59693	59693					0.06597145334569632
NLGLSRPL	8	Unmodified	_NLGLSRPL_					0	0	0			REV__ENST00000506632.2_1_4:95506828-95507561:+|nuORF	REV__ENST00000506632.2_1_4:95506828-95507561:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7798156738281	2	435.263802	868.513051	0.086289	3.7559E-05	0.19016	8.277E-05	0.27645	0.00012033	435.26378035957384	39.112	0.59165	39.112	38.868	39.459	0					27	16	2	0	0	0	0.027866	1	3329	3329		51.335	0	1	1019500	+		54493	34035	38046	38109	59694	59694					0.07353508479945958
NLGPIKLN	8	Unmodified	_NLGPIKLN_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.2740783691406	2	434.766178	867.517802	1.0822	0.00047051	-0.15749	-6.8471E-05	0.92472	0.00040204	434.76601398748494	54.903	0.65537	54.697	54.358	55.013	-0.20613					43	17	3	0	0	0	0.027866	1	5819	5819		65.803	7.9919	1	1128600	+		54494	20800	38047	38110	59695	59695					0.07874392622704818
NLGQQLDL	8	Unmodified	_NLGQQLDL_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.75921630859375	2	450.742899	899.471246	-0.17294	-7.7951E-05	0.028558	1.2872E-05	-0.14438	-6.5078E-05	450.74290456892777	44.619	0.65307	44.655	44.306	44.959	0.0369					41	18	3	0	0	0	0.027866	1	4228	4228		53.351	0	1	392160			54495	1112;18045	38048	38111	59696	59696					0.017489080007635494
NLGRELYF	8	Unmodified	_NLGRELYF_					0	0	0		ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81085205078125	2	506.266542	1010.51853	-0.47868	-0.00024234	0.45483	0.00023026	-0.023852	-1.2076E-05	506.26656587528333	56.402	0.7079	56.402	56.07	56.778	0					57	19	4	0	0	0	0.027866	1	6335	6335		42.474	0	1	1666300			54496	9476	38049	38112	59697	59697					0.01369187271757255
NLGRIQKKPKT	11	Unmodified	_NLGRIQKKPKT_					0	0	0		ENST00000596690.1_2_19:52403157-52403544:-|nuORF;ENST00000599530.1_2_19:52403289-52403544:-|nuORF;ENST00000597882.5_1_19:52400103-52403544:-|nuORF;ENST00000354957.7_2_19:52399801-52403544:-|nuORF	ENST00000596690.1_2_19:52403157-52403544:-|nuORF	ENST00000596690.1_2_19:52403157-52403544:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.7846984863281	3	428.269978	1281.7881	-0.30432	-0.00013033	1.6027	0.00068639	1.2984	0.00055606	428.2692646746386	26.142	0.46206	25.906	25.636	26.098	-0.23603					21	12	3	0	0	0	0.024749	1	1294	1294		5.1424	0	1	131700			54497	12636	38050	38113	59698	59698					0.15848120888108497
NLGRQRID	8	Unmodified	_NLGRQRID_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2613525390625	2	486.27269	970.530826	-1.0056	-0.00048898	-4.1122	-0.0019997	-5.1178	-0.0024886	486.27027406760936	46.161	0.63169	46.009	45.578	46.209	-0.15157					36	17	3	0	0	0	0.027866	1	4539	4539		31.955	0	1	1140900			54498	4666	38051	38114	59699	59699					0.044382237348031595
NLGRQRID	8	Unmodified	_NLGRQRID_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7442321777344	2	486.27269	970.530826	-0.48371	-0.00023521	2.5967	0.0012627	2.113	0.0010275	486.2737962528032	62.167	0.35668	61.94	61.727	62.084	-0.22663					11	9	2	0	0	0	0.027866	1	7218	7218		38.806	13.356	1	79043			54499	4666	38051	38114	59700	59700					0.044382237348031595
NLGWFSDLN	9	Unmodified	_NLGWFSDLN_					0	0	0		ENSG00000213221|ENST00000371738|DNLZ;ENST00000481053.5_1_9:139256466-139257898:-|nuORF	ENSG00000213221|ENST00000371738|DNLZ	ENSG00000213221|ENST00000371738|DNLZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7904663085938	2	533.253631	1064.49271	-0.78096	-0.00041645	3.9574	0.0021103	3.1765	0.0016939	533.2555969893097	56.42	2.0209	56.517	55.447	57.468	0.097897					139	55	3	0	0	0	0.0242	1	6115	6115		69.628	12.907	1	1542100			54500	10496	38052	38115	59701	59701					-0.036957069705295
NLGWFSDLN	9	Unmodified	_NLGWFSDLN_					0	0	0		ENSG00000213221|ENST00000371738|DNLZ;ENST00000481053.5_1_9:139256466-139257898:-|nuORF	ENSG00000213221|ENST00000371738|DNLZ	ENSG00000213221|ENST00000371738|DNLZ	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.253631	1064.49271	-0.28388	-0.00015138	0.94693	0.00050495	0.66306	0.00035358	533.7566372258357	56.5	0.23682	56.275	56.189	56.426	-0.2248	-0.17215	-0.0031149	NaN	69.628	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131160			54501	10496	38052	38115							-0.036957069705295
NLHHLILN	8	Unmodified	_NLHHLILN_					0	0	0		ENSG00000165379|ENST00000298119|LRFN5;LRFN5|p.N133S|1|0.26|ENSG00000165379|chr14:41887023-41887023|A/G|missense_variant	ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79656982421875	2	487.282526	972.550499	-0.96425	-0.00046986	-0.34586	-0.00016853	-1.3101	-0.00063839	487.282387364246	59.784	0.74525	59.866	59.423	60.168	0.082329					24	19	2	0	0	0	0.027866	1	6695	6695		40.573	0	1	141510			54502	7407	38053	38116	59702	59702					0.06312599745581338
NLHIILDAK	9	Unmodified	_NLHIILDAK_					0	0	0			REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	REV__nc|ENSG00000188089|Q3MJ16-2|PLA2G4E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7928466796875	2	518.811116	1035.60768	1.2611	0.00065428	-1.0513	-0.0005454	0.20987	0.00010888	518.8105239454277	63.95	0.21478	63.995	63.867	64.081	0.045502					15	5	4	0	0	0	0.024374	1	7427	7427		32.812	3.6424	1	311710	+		54503	28007	38054	38117	59703	59703					0.09130022231261137
NLHIRRHP	8	Unmodified	_NLHIRRHP_					0	0	0		ENST00000358931.9_1_19:39380558-39384055:-|nuORF;ENST00000423526.5_1_19:39380558-39382483:-|nuORF	ENST00000358931.9_1_19:39380558-39384055:-|nuORF	ENST00000358931.9_1_19:39380558-39384055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7645874023438	2	521.804491	1041.59443	-0.63216	-0.00032986	-0.40534	-0.00021151	-1.0375	-0.00054137	522.3057616787064	36.009	0.4122	36.047	35.855	36.267	0.038044					17	11	2	0	0	0	0.027866	1	2735	2735		42.474	7.2737	1	133540			54504	12727	38055	38118	59704	59704					0.07529628962538482
NLHLRGGAR	9	Unmodified	_NLHLRGGAR_					0	0	0			REV__ENSG00000101213|ENST00000542869|PTK6	REV__ENSG00000101213|ENST00000542869|PTK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2505187988281	2	497.288674	992.562795	-0.19172	-9.5339E-05	2.4586	0.0012226	2.2668	0.0011273	497.28970738383805	25.398	0.45942	25.227	24.997	25.457	-0.17078					23	10	3	0	0	0	0.024381	1	1168	1168		45.952	21.433	1	202440	+		54505	21202	38056	38119	59705	59705					0.066216362086152
NLHLYSPYL	9	Unmodified	_NLHLYSPYL_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.32080078125	2	560.295299	1118.57605	-0.17688	-9.9105E-05	0.67769	0.00037971	0.50081	0.0002806	560.2956349053678	72.684	0.60266	72.407	72.197	72.799	-0.2769					23	13	2	0	0	0	0.024447	1	8542	8542		49.442	7.0454	1	482300	+		54506	27449	38057	38120	59706	59706					0.02150029477343196
NLHMKRFV	8	Unmodified	_NLHMKRFV_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7318115234375	2	522.792204	1043.56985	0.42175	0.00022049	4.2068	0.0021993	4.6285	0.0024198	522.796024989616	37.054	0.98352	36.844	36.525	37.509	-0.2092					31	24	2	0	0	0	0.027866	1	2998	2998		33.516	10.473	1	225360			54507	3510	38058	38121	59707	59707					0.04981232764816923
NLHNTVALLVL	11	Unmodified	_NLHNTVALLVL_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5426330566406	3	402.911679	1205.71321	0.58526	0.00023581	-0.0080992	-3.2633E-06	0.57716	0.00023254	402.9114796919319	20.187	0.62782	20.019	19.816	20.444	-0.16774					33	12	4	0	0	0	0.024759	1	498	498		12.957	0	1	299070			54508	6938	38059	38122	59708	59708					0.1185793835691129
NLHSDGKNK	9	Unmodified	_NLHSDGKNK_					0	0	0			REV__ENSG00000147649|ENST00000336273|MTDH	REV__ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7139892578125	2	506.762155	1011.50976	-1.3892	-0.00070402	-0.33327	-0.00016889	-1.7225	-0.00087291	506.76215185489934	33.926	0.42808	33.751	33.583	34.011	-0.17557					14	10	2	0	0	0	0.024477	1	2464	2464		35.618	16.258	1	65930	+		54509	24574	38060	38123	59709	59709					0.004462136352913149
NLHSEVVEV	9	Unmodified	_NLHSEVVEV_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7666625976562	2	513.266739	1024.51892	-0.52508	-0.00026951	3.0879	0.0015849	2.5628	0.0013154	513.2687894126938	79.477	1.6634	79.495	78.946	80.609	0.018677					91	39	4	0	0	0	0.33245	1	9756	9756		71.296	4.8664	1	7139400			54510	774	38061	38124	59710	59710					0.007645622009476938
NLHVGFVTV	9	Unmodified	_NLHVGFVTV_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2785339355469	2	493.276909	984.539266	0.33075	0.00016315	3.2811	0.0016185	3.6118	0.0017816	493.27830612963976	20.227	1.4766	20.004	19.68	21.157	-0.22344					53	29	4	0	0	0	0.59099	1	492	492		53.351	7.3995	1	606110	+		54511	27729	38062	38125	59711	59711					0.04637777651430497
NLHVLNEDQAL	11	Unmodified	_NLHVLNEDQAL_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	633.3673706054688	2	633.327859	1264.64116	-0.81718	-0.00051754	-1.97	-0.0012477	-2.7872	-0.0017652	633.3265710093001	95.571	0.95863	95.434	94.852	95.81	-0.13689					29	21	2	0	0	0	0.024812	1	11734	11734		41.427	12.257	1	60457			54512	9498	38063	38126	59712	59712					0.01942979212526552
NLHVLNEDQAL	11	Unmodified	_NLHVLNEDQAL_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	633.8704223632812	2	633.327859	1264.64116	-0.51116	-0.00032373	-0.94435	-0.00059808	-1.4555	-0.00092181	633.3266917474987	95.666	0.91621	95.515	94.796	95.712	-0.15186					26	20	2	0	0	0	0.024771	1	11713	11713		51.193	29.507	1	79507			54513	9498	38063	38126	59713	59713					0.01942979212526552
NLHYQACLF	9	Unmodified	_NLHYQACLF_					0	0	0			REV__nc|ENSG00000082438|Q53SF7-2|COBLL1	REV__nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.3297119140625	2	554.765852	1107.51715	-0.70967	-0.0003937	1.1157	0.00061894	0.40601	0.00022524	554.7654795429106	28.199	0.66013	28.03	27.807	28.467	-0.16897					26	15	4	0	0	0	0.024405	1	1645	1645		35.618	0	1	104010	+		54514	36486	38064	38127	59714	59714					-0.032307700886804014
NLHYQACLF	9	Unmodified	_NLHYQACLF_					0	0	0			REV__nc|ENSG00000082438|Q53SF7-2|COBLL1	REV__nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.3298950195312	2	554.765852	1107.51715	-0.57806	-0.00032069	-0.41575	-0.00023064	-0.99381	-0.00055133	554.7655722061071	28.251	0.5135	28.099	27.847	28.36	-0.15195					17	12	2	0	0	0	0.024506	1	1638	1638		30.504	3.7075	1	122650	+		54515	36486	38064	38127	59715	59715					-0.032307700886804014
NLIAEGHI	8	Unmodified	_NLIAEGHI_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.25677490234375	2	433.74016	865.465767	-0.23565	-0.00010221	0.074217	3.2191E-05	-0.16143	-7.0019E-05	433.7386895892262	102.79	0.35001	102.79	102.57	102.92	0					15	8	3	0	0	0	0.027866	1	13143	13143		37.159	0	1	802120			54516	10221	38065	38128	59716	59716					0.027652292089555885
NLIAIGLKLT	10	Unmodified	_NLIAIGLKLT_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2587280273438	2	528.344792	1054.67503	-0.3182	-0.00016812	0.58971	0.00031157	0.2715	0.00014345	528.3449675541812	61.966	0.71843	61.752	61.334	62.052	-0.21375					27	17	3	0	0	0	0.03519	1	6921	6921		39.253	0	1	255430	+		54517	28441;28494	38066	38129	59717	59717					0.14988052442208755
NLIASYYCN	9	Unmodified	_NLIASYYCN_					0	0	0		JAG1|p.D437N|1|0.17|ENSG00000101384|chr20:10649561-10649561|C/T|missense_variant	JAG1|p.D437N|1|0.17|ENSG00000101384|chr20:10649561-10649561|C/T|missense_variant	JAG1|p.D437N|1|0.17|ENSG00000101384|chr20:10649561-10649561|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.27783203125	2	530.742042	1059.46953	-0.85812	-0.00045544	0.47501	0.00025211	-0.38311	-0.00020333	530.7422224656328	80.325	0.29711	80.346	80.146	80.443	0.021446					8	6	2	0	0	0	0.024209	1	9917	9917		56.721	14.325	1	36355			54518	17780	38067	38130	59718	59718					-0.057824690794859634
NLIAVLGEH	9	Unmodified	_NLIAVLGEH_					0	0	0		nc|ENSG00000057593|P08709|F7;ENSG00000057593|ENST00000346342|F7	nc|ENSG00000057593|P08709|F7	nc|ENSG00000057593|P08709|F7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.27447509765625	2	483.274367	964.53418	-0.21365	-0.00010325	-0.33978	-0.00016421	-0.55343	-0.00026746	483.27428705124004	64.518	0.70891	64.518	64.311	65.02	0					43	18	3	0	0	0	0.33245	1	7609	7609		71.296	2.5089	1	1972000			54519	18051	38068	38131	59719	59719					0.050494737888243435
NLIAVLGEH	9	Unmodified	_NLIAVLGEH_					0	0	0		nc|ENSG00000057593|P08709|F7;ENSG00000057593|ENST00000346342|F7	nc|ENSG00000057593|P08709|F7	nc|ENSG00000057593|P08709|F7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.27557373046875	2	483.274367	964.53418	-1.1738	-0.00056727	0.38547	0.00018629	-0.78833	-0.00038098	483.274642197535	64.815	0.8336	64.552	64.267	65.101	-0.2626					50	21	3	0	0	0	0.27161	2	7609	7609;7622		79.451	18.479	1	2056100			54520	18051	38068	38131	59720;59721	59720					0.050494737888243435
NLIAVLGEH	9	Unmodified	_NLIAVLGEH_					0	0	0		nc|ENSG00000057593|P08709|F7;ENSG00000057593|ENST00000346342|F7	nc|ENSG00000057593|P08709|F7	nc|ENSG00000057593|P08709|F7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.2740783691406	2	483.274367	964.53418	-0.48015	-0.00023204	-0.051047	-2.467E-05	-0.53119	-0.00025671	483.27438669767264	64.538	0.64067	64.583	64.335	64.975	0.045502					53	16	4	0	0	0	0.33245	1	7527	7527		71.296	15.791	1	2551300			54521	18051	38068	38131	59722	59722					0.050494737888243435
NLICKKFAHF	10	Unmodified	_NLICKKFAHF_					0	0	0		ENST00000561126.1_1_15:56981193-56985362:-|nuORF	ENST00000561126.1_1_15:56981193-56985362:-|nuORF	ENST00000561126.1_1_15:56981193-56985362:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.2312927246094	3	407.558471	1219.65358	1.354	0.00055183	-1.5694	-0.00063961	-0.21538	-8.7779E-05	407.55769806888765	43.651	0.39888	43.682	43.593	43.992	0.030827					17	10	2	0	0	0	0.03519	1	4039	4039		29.17	7.4843	1	452630			54522	16816	38069	38132	59723	59723					0.052543441418492876
NLICKVPKT	9	Unmodified	_NLICKVPKT_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.813720703125	2	508.30207	1014.58959	-0.27444	-0.0001395	-2.678	-0.0013612	-2.9524	-0.0015007	508.80247008180766	77.185	1.1237	76.974	76.461	77.585	-0.21087					36	26	2	0	0	0	0.024405	1	9456	9456		44.117	17.424	1	655470	+		54523	24088	38070	38133	59724	59724					0.08287563984913504
NLICKVPKT	9	Unmodified	_NLICKVPKT_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.30207	1014.58959	0.45729	0.00023244	-3.647	-0.0018538	-3.1897	-0.0016213	508.30005286602085	77.136	0.79784	76.867	76.595	77.393	-0.26806	-0.044619	-0.00030878	NaN	49.442	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1460300	+		54524	24088	38070	38133							0.08287563984913504
NLICKVPKT	9	Unmodified	_NLICKVPKT_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.30207	1014.58959	0.45144	0.00022947	-3.9459	-0.0020057	-3.4944	-0.0017762	508.29993069959295	77.113	0.56773	76.861	76.571	77.138	-0.25162	-0.050731	-0.00061265	NaN	49.442	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	965380	+		54525	24088	38070	38133							0.08287563984913504
NLICKVPKT	9	Unmodified	_NLICKVPKT_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.30207	1014.58959	-0.49596	-0.0002521	-2.694	-0.0013693	-3.1899	-0.0016214	508.30047005759525	76.977	0.52727	76.809	76.525	77.052	-0.16854	-0.10321	0.00066005	NaN	49.442	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1231800	+		54526	24088	38070	38133							0.08287563984913504
NLIDCVIQIK	10	Unmodified	_NLIDCVIQIK_					0	0	0			REV__ENSG00000164118|ENST00000503780|CEP44	REV__ENSG00000164118|ENST00000503780|CEP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.3101196289062	2	579.831191	1157.64783	-0.37811	-0.00021924	-1.4438	-0.00083714	-1.8219	-0.0010564	579.8301180852801	74.339	0.35135	74.076	73.966	74.318	-0.26326					10	7	2	0	0	0	0.03519	1	8781	8781		21.96	9.753	1	141010	+		54527	25699	38071	38134	59725	59725					0.07531200839548546
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	596.8089599609375	2	596.808436	1191.60232	-1.3984	-0.00083459	1.534	0.00091552	0.13561	8.0934E-05	596.8092465239899	97.834	1.7199	97.834	97.415	99.135	0					104	39	5	0	0	0	0.0029293	6	12465	12456;12465;12477;12489;12501;12513		185.72	114.42	1	3011200			54528	4127	38072	38135	59726;59727;59728;59729;59730;59731	59727					0.014182538581508197
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	596.8084716796875	2	596.808436	1191.60232	-0.27839	-0.00016615	0.46298	0.00027631	0.18459	0.00011016	596.8086254400318	97.714	1.8072	97.723	97.371	99.178	0.0094452					106	41	5	0	0	0	0.00015698	7	12447	12412;12423;12435;12447;12459;12474;12499		199.7	124.66	1	2872900			54529	4127	38072	38135	59732;59733;59734;59735;59736;59737;59738	59735					0.014182538581508197
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.808837890625	2	596.808436	1191.60232	0.25366	0.00015138	-0.09805	-5.8517E-05	0.15561	9.2867E-05	596.8082384353934	97.878	1.7116	97.876	97.456	99.168	-0.0020752					103	39	5	0	0	0	0.0029293	7	12413	12389;12401;12413;12424;12436;12450;12462		185.72	110.68	1	3561900			54530	4127	38072	38135	59739;59740;59741;59742;59743;59744;59745	59741					0.014182538581508197
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.8089599609375	2	596.808436	1191.60232	0.33699	0.00020112	-0.24951	-0.00014891	0.087481	5.2209E-05	596.8081548677109	97.809	0.94736	97.672	97.285	98.233	-0.1367					53	22	4	0	0	0	0.0081025	5	12086	12075;12086;12099;12111;12123		172.25	86.387	1	1386900			54531	4127	38072	38135	59746;59747;59748;59749;59750	59747					0.014182538581508197
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.80908203125	2	596.808436	1191.60232	0.5236	0.00031249	-0.51573	-0.00030779	0.0078705	4.6972E-06	596.8079867856729	97.814	1.0914	97.69	97.327	98.418	-0.12368					59	25	4	0	0	0	0.0081025	5	12099	12088;12099;12112;12125;12141		172.25	103.4	1	1287800			54532	4127	38072	38135	59751;59752;59753;59754;59755	59752					0.014182538581508197
NLIDLDDLYV	10	Unmodified	_NLIDLDDLYV_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.8087768554688	2	596.808436	1191.60232	-0.4379	-0.00026134	0.33836	0.00020193	-0.099545	-5.9409E-05	596.8085109661993	97.85	1.2854	97.685	97.351	98.637	-0.16521					71	30	4	0	0	0	0.0046889	6	12098	12074;12086;12098;12110;12120;12132		180.87	105.83	1	1500900			54533	4127	38072	38135	59756;59757;59758;59759;59760;59761	59758					0.014182538581508197
NLIEKSIYL	9	Unmodified	_NLIEKSIYL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8220825195312	2	546.818607	1091.62266	-0.22103	-0.00012086	3.4109	0.0018651	3.1898	0.0017443	546.8210785709807	64.404	1.1397	64.404	63.88	65.02	0					92	30	5	0	0	0	0.28753	2	7572	7572;7583		77.318	3.0625	1	8679600			54534	18383	38073	38136	59762;59763	59762					0.08051469308588821
NLIEKSIYL	9	Unmodified	_NLIEKSIYL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.819091796875	2	546.818607	1091.62266	-0.63067	-0.00034486	0.082936	4.5351E-05	-0.54773	-0.00029951	546.8187258534341	64.65	1.525	64.416	63.982	65.507	-0.2345					92	37	4	0	0	0	0.12914	3	7351	7341;7351;7364		104.06	21.543	1	8176900			54535	18383	38073	38136	59764;59765;59766	59765					0.08051469308588821
NLIEKSIYL	9	Unmodified	_NLIEKSIYL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8186645507812	2	546.818607	1091.62266	-0.54135	-0.00029602	0.063312	3.462E-05	-0.47803	-0.0002614	546.8187134234703	64.652	1.1956	64.45	63.99	65.186	-0.20254					79	29	5	0	0	0	0.17845	4	7349	7340;7349;7360;7372		93.143	16.369	1	8397300			54536	18383	38073	38136	59767;59768;59769;59770	59768					0.08051469308588821
NLIEKSIYL	9	Unmodified	_NLIEKSIYL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.8182373046875	2	546.818607	1091.62266	-0.89911	-0.00049165	0.32108	0.00017557	-0.57803	-0.00031608	546.8188712890303	64.701	1.1849	64.446	63.999	65.184	-0.25563					80	29	5	0	0	0	0.12914	3	7365	7342;7353;7365		104.06	21.808	1	9862300			54537	18383	38073	38136	59771;59772;59773	59773					0.08051469308588821
NLIFRYSP	8	Unmodified	_NLIFRYSP_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.26605224609375	2	505.276909	1008.53927	-0.64063	-0.00032369	0.58402	0.00029509	-0.056605	-2.8601E-05	505.2768539564143	63.104	0.79543	63.104	62.651	63.447	0					43	20	3	0	0	0	0.027866	1	7303	7303		29.15	0	1	1135300	+		54538	20736	38074	38137	59774	59774					0.03533777651421133
NLIFRYSP	8	Unmodified	_NLIFRYSP_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.276909	1008.53927	-0.15227	-7.6938E-05	0.12096	6.1117E-05	-0.031312	-1.5821E-05	505.27672344206917	63.345	0.71452	63.094	62.766	63.48	-0.25141	-0.0051776	-0.00019557	NaN	29.15	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130900	+		54539	20736	38074	38137							0.03533777651421133
NLIGIYRLCL	10	Unmodified	_NLIGIYRLCL_					0	0	0		ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	ENSG00000169047|ENST00000305123|IRS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3421630859375	2	589.341726	1176.6689	-0.98298	-0.00057931	3.4404	0.0020276	2.4574	0.0014483	589.3435769896907	103.58	0.62865	103.59	103.35	103.98	0.0054245					48	16	4	0	0	0	1.089	1	13251	13251		34.173	5.0025	1	621970			54540	7895	38075	38138	59775	59775					0.08763210939082455
NLIGKQSQ	8	Unmodified	_NLIGKQSQ_					0	0	0		GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.7898254394531	2	444.250892	886.48723	0.1133	5.0334E-05	0.037827	1.6805E-05	0.15113	6.7138E-05	444.25088029114187	30.422	0.41481	30.273	30.099	30.513	-0.14952					16	9	2	0	0	0	0.027866	1	1941	1941		56.721	17.468	1	68880			54541	17667	38076	38139	59776	59776					0.039446142376732496
NLIGKYSQ	8	Unmodified	_NLIGKYSQ_					0	0	0		nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENSG00000137266|ENST00000406686|SLC22A23;nc|ENSG00000137266|A1A5C7-3|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF	nc|ENSG00000137266|A1A5C7-2|SLC22A23	nc|ENSG00000137266|A1A5C7-2|SLC22A23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.2746887207031	2	461.753267	921.491981	0.24772	0.00011438	1.4806	0.00068368	1.7283	0.00079806	461.75305325547697	21.071	0.43512	20.894	20.726	21.162	-0.17721					13	8	2	0	0	0	0.027866	1	624	624		30.504	0	1	26978			54542	5108	38077	38140	59777	59777					0.028094983804294316
NLIGLLII	8	Unmodified	_NLIGLLII_					0	0	0			REV__ENST00000274456.6_1_5:118728948-118729086:+|nuORF	REV__ENST00000274456.6_1_5:118728948-118729086:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.25213623046875	2	434.796946	867.57934	0.088602	3.8524E-05	0.71969	0.00031292	0.80829	0.00035144	434.7970145449257	78.411	0.53694	78.427	78.195	78.732	0.015907					15	12	2	0	0	0	0.027866	1	9602	9602		26.796	0	1	60767	+		54543	29830	38078	38141	59778	59778					0.14025324322005872
NLIHFHHFWPF	11	Unmodified	_NLIHFHHFWPF_					0	0	0			REV__ENST00000488423.1_1_3:16301924-16302065:-|nuORF	REV__ENST00000488423.1_1_3:16301924-16302065:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8031311035156	3	498.919168	1493.73567	-1.1669	-0.00058219	-3.9377	-0.0019646	-5.1046	-0.0025468	498.9173172073544	36.07	0.34863	36.027	35.896	36.244	-0.042454					22	9	3	0	0	0	0.024792	1	2839	2839		18.531	0	1	215500	+		54544	33645	38079	38142	59779	59779					0.008555825451594501
NLIIKEGPTV	10	Unmodified	_NLIIKEGPTV_					0	0	0			REV__ENST00000518913.5_1_8:22034120-22058713:+|nuORF	REV__ENST00000518913.5_1_8:22034120-22058713:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3005981445312	2	542.324057	1082.63356	-1.2487	-0.0006772	-0.6585	-0.00035712	-1.9072	-0.0010343	542.323104896056	64.78	0.4865	64.78	64.422	64.909	0					19	12	2	0	0	0	0.03519	1	7625	7625		47.657	0	1	98161	+		54545	34246	38080	38143	59780	59780					0.09554871682894372
NLIILDTAKKH	11	Unmodified	_NLIILDTAKKH_					0	0	0		ENSG00000106034|ENST00000310396|CPED1	ENSG00000106034|ENST00000310396|CPED1	ENSG00000106034|ENST00000310396|CPED1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.5934753417969	3	422.590717	1264.75032	0.6876	0.00029057	4.3102	0.0018214	4.9978	0.002112	422.5924533889246	49.865	3.5983	49.684	49.002	52.6	-0.18071					269	94	5	0	0	0	0.99147	1	5110	5110		38.714	2.3964	1	10769000			54546	2752	38081	38144	59781	59781					0.1285360990261779
NLIIRQAR	8	Unmodified	_NLIIRQAR_					0	0	0		UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant;nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D;nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3003845214844	2	492.309075	982.603597	-0.42386	-0.00020867	4.1327	0.0020346	3.7089	0.0018259	492.3112978764447	93.31	0.50474	93.306	92.99	93.495	-0.0042038					17	11	2	0	0	0	0.027866	1	11784	11784		18.324	0	1	66742			54547	6543	38082	38145	59782	59782					0.11159977528222953
NLIKKTVL	8	Unmodified	_NLIKKTVL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.8133544921875	2	464.813128	927.611703	-0.41563	-0.00019319	0.047262	2.1968E-05	-0.36837	-0.00017122	464.8131556107188	38.039	2.2723	37.86	37.557	39.829	-0.17929					147	62	5	0	0	0	0.2917	1	3138	3138		115.46	5.1217	1	31508000			54548	7149	38083	38146	59783	59783					0.1450011172498762
NLIKKTVL	8	Unmodified	_NLIKKTVL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.81298828125	2	464.813128	927.611703	-0.78326	-0.00036407	0.2922	0.00013582	-0.49106	-0.00022825	464.81328090009987	38.134	2.684	37.913	37.542	40.226	-0.22149					161	72	5	0	0	0	0.24001	1	3130	3130		133.81	4.9515	1	33345000			54549	7149	38083	38146	59784	59784					0.1450011172498762
NLIKKTVL	8	Unmodified	_NLIKKTVL_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.8128356933594	2	464.813128	927.611703	-0.79928	-0.00037152	0.30544	0.00014197	-0.49384	-0.00022954	464.81324776637933	38.129	2.5229	37.91	37.535	40.058	-0.21848					155	68	5	0	0	0	0.1848	3	3131	3094;3119;3131		143.02	4.8723	1	31027000			54550	7149	38083	38146	59785;59786;59787	59787					0.1450011172498762
NLIKLMHK	8	Unmodified	_NLIKLMHK_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.80340576171875	2	498.80478	995.595007	-0.076385	-3.8101E-05	-2.7663	-0.0013798	-2.8427	-0.0014179	498.8033988625939	52.928	2.1732	52.928	51.836	54.01	0					154	58	5	0	0	0	0.78609	2	5684	5684;5695		60.294	17.819	1	12555000	+		54551	22585	38084	38147	59788;59789	59788					0.09703287567390362
NLIKLMHK	8	Unmodified	_NLIKLMHK_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8031311035156	2	498.80478	995.595007	-0.50951	-0.00025414	-2.0764	-0.0010357	-2.586	-0.0012899	498.8036589675882	52.964	1.3147	52.817	52.607	53.921	-0.14723					67	35	2	0	0	0	0.97924	1	5666	5666		40.573	3.4135	1	12483000	+		54552	22585	38084	38147	59790	59790					0.09703287567390362
NLIKLMHK	8	Unmodified	_NLIKLMHK_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.8027648925781	2	498.80478	995.595007	-0.032016	-1.5969E-05	-2.6154	-0.0013046	-2.6474	-0.0013206	498.80335500721344	52.799	1.1628	52.891	52.674	53.836	0.091938					99	31	4	0	0	0	0.97924	1	5586	5586		40.573	3.4135	1	12396000	+		54553	22585	38084	38147	59791	59791					0.09703287567390362
NLIKQNCDQ	9	Unmodified	_NLIKQNCDQ_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2950439453125	2	538.263673	1074.51279	-1.1486	-0.00061825	1.573	0.00084669	0.42441	0.00022844	538.2644735551755	56.604	0.47697	56.44	56.129	56.606	-0.16431					18	12	2	0	0	0	0.024447	1	6278	6278		32.812	9.7699	1	168700		+	54554	508	38085	38148	59792	59792					-0.021482793022187252
NLIKQNCDQ	9	Unmodified	_NLIKQNCDQ_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2951049804688	2	538.263673	1074.51279	-1.239	-0.00066691	1.9545	0.0010521	0.71552	0.00038514	538.2645524177323	56.28	0.44498	56.378	56.101	56.546	0.097893					18	11	2	0	0	0	0.024374	1	6148	6148		40.778	6.6056	1	182910		+	54555	508	38085	38148	59793	59793					-0.021482793022187252
NLILAVVAM	9	Unmodified	_NLILAVVAM_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN3A|p.K585Efs*6|1|0.12|ENSG00000153253|chr2:165140917-165140918|-/C|frameshift_variant;SCN2A|p.E459Kfs*22|1|0.21|ENSG00000136531|chr2:165314100-165314100|G/-|frameshift_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000183873|Q14524-5|SCN5A;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2876281738281	2	472.285889	942.557224	-0.12415	-5.8633E-05	3.6131	0.0017064	3.4889	0.0016478	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	0.90698	1	12011	12011		31.955	5.1588	1	53299000			54556	7940;6337;18631;5026;9288;37863;816	38086	38149	59794	59794					0.08364776581913702
NLILGYLSTL	10	Unmodified	_NLILGYLSTL_					0	0	0			REV__ENSG00000106819|ENST00000375544|ASPN	REV__ENSG00000106819|ENST00000375544|ASPN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7670288085938	2	553.826432	1105.63831	-0.29144	-0.00016141	-0.69753	-0.00038631	-0.98897	-0.00054772	553.8262651909125	60.937	0.88074	60.731	60.543	61.424	-0.20599					34	21	3	0	0	0	0.03519	1	6894	6894		13.454	0	1	399430	+		54557	21646	38087	38150	59795	59795					0.08971755825655237
NLILIDINGF	10	Unmodified	_NLILIDINGF_					0	0	0			REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|103|3|anti-sense	REV__L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|103|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.3239135742188	2	566.324057	1130.63356	0.46208	0.00026169	-3.6634	-0.0020747	-3.2014	-0.001813	566.3219869268645	106.01	0.50353	105.85	105.65	106.16	-0.16132					58	22	4	0	0	0	0.98754	1	13180	13180		47.657	9.8458	1	515910	+		54558	36248	38088	38151	59796	59796					0.07346871682898382
NLILIRYTG	9	Unmodified	_NLILIRYTG_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.816650390625	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.6504	1	10606	10606		49.442	8.6634	1	4853400			54559	5370	38089	38152	59797	59797					0.09498308748311501
NLILIRYTG	9	Unmodified	_NLILIRYTG_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.816650390625	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.89441	1	10580	10580		32.812	6.1195	1	4521600			54560	5370	38089	38152	59798	59798					0.09498308748311501
NLILLAGHI	9	Unmodified	_NLILLAGHI_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.7325439453125	2	482.302927	962.591301	0.53416	0.00025762	-0.76356	-0.00036827	-0.22941	-0.00011064	482.3024160773773	57.519	0.42292	57.344	57.111	57.534	-0.1749					20	10	3	0	0	0	0.024412	1	6421	6421		17.365	3.5896	1	234090	+		54561	28479	38090	38153	59799	59799					0.10850941065177722
NLILLSQVN	9	Unmodified	_NLILLSQVN_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2802429199219	2	507.303124	1012.5917	-0.31524	-0.00015992	3.5551	0.0018035	3.2398	0.0016436	507.3049950695266	49.855	0.23261	49.929	49.877	50.11	0.074196					8	6	2	0	0	0	0.024374	1	5111	5111		32.812	22.547	1	96960	+		54562	28834	38091	38154	59800	59800					0.08590315994376851
NLILLSQVN	9	Unmodified	_NLILLSQVN_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.303124	1012.5917	0.17391	8.8225E-05	-0.93428	-0.00047397	-0.76037	-0.00038574	507.3023888310293	50.15	0.27019	50.045	49.856	50.127	-0.10558	0.035313	-0.0011995	NaN	25.574	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96169	+		54563	28834	38091	38154							0.08590315994376851
NLILLSQVN	9	Unmodified	_NLILLSQVN_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.303124	1012.5917	0.1922	9.7504E-05	-2.5729	-0.0013052	-2.3807	-0.0012077	507.3023028194119	50.235	0.23246	50.054	49.901	50.133	-0.18071	0.044909	-0.002862	NaN	25.574	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137300	+		54564	28834	38091	38154							0.08590315994376851
NLIMKRHF	8	Unmodified	_NLIMKRHF_					0	0	0		ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8234252929688	2	529.800029	1057.5855	-1.0683	-0.00056597	2.6021	0.0013786	1.5338	0.00081262	529.8012149853706	61.739	0.70609	61.739	61.374	62.08	0					46	18	4	0	0	0	0.027866	1	7109	7109		12.959	0	1	3611900			54565	5812	38092	38155	59801	59801					0.05901519281860601
NLIQYVHL	8	Unmodified	_NLIQYVHL_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3132019042969	2	500.284734	998.554916	-0.26159	-0.00013087	-4.3232	-0.0021628	-4.5848	-0.0022937	500.28329602063747	76.356	0.35007	76.087	75.779	76.129	-0.26806					17	8	3	0	0	0	0.027866	1	9055	9055		35.201	0	1	891810			54566	6159	38093	38156	59802	59802					0.05558064168462806
NLIQYVHL	8	Unmodified	_NLIQYVHL_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3132019042969	2	500.284734	998.554916	0.089208	4.4629E-05	-2.7731	-0.0013873	-2.6839	-0.0013427	500.78457786450116	76.604	0.83846	76.336	75.968	76.807	-0.26806					32	19	2	0	0	0	0.027866	1	9055	9055		35.201	0	1	1639000			54567	6159	38093	38156	59803	59803					0.05558064168462806
NLIRTFKDNS	10	Unmodified	_NLIRTFKDNS_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.20391845703125	3	403.219172	1206.63569	-0.005066	-2.0427E-06	0.66359	0.00026757	0.65852	0.00026553	403.2194328185035	60.806	0.38941	60.63	60.403	60.793	-0.1761					15	9	2	0	0	0	0.03519	1	6757	6757		32.751	8.5187	1	109580			54568	9482;18594	38094	38157	59804	59804					0.04063300420716587
NLIRTFKDNS	10	Unmodified	_NLIRTFKDNS_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	403.219172	1206.63569	0.41913	0.000169	-0.2053	-8.2781E-05	0.21383	8.6221E-05	403.2190313546719	61.092	0.564	60.886	60.695	61.259	-0.20599	0.10006	-0.00061363	NaN	32.751	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114290			54569	9482;18594	38094	38157							0.04063300420716587
NLISFRPSI	9	Unmodified	_NLISFRPSI_					0	0	0		ENST00000413990.1_1_1:158146977-158147493:-|nuORF	ENST00000413990.1_1_1:158146977-158147493:-|nuORF	ENST00000413990.1_1_1:158146977-158147493:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8365478515625	2	523.803291	1045.59203	-0.12352	-6.4701E-05	-0.48015	-0.00025151	-0.60368	-0.00031621	523.80319509979	61.435	1.2087	61.209	60.63	61.839	-0.22663					63	31	4	0	0	0	0.019995	1	7002	7002		101.6	2.2258	1	3356200			54570	13854	38095	38158	59805	59805					0.07105735714230832
NLITNLRHAIT	11	Unmodified	_NLITNLRHAIT_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.36962890625	2	633.369861	1264.72517	0.38898	0.00024637	-1.5913	-0.0010079	-1.2023	-0.00076153	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	1.0074	1	11977	11977		35.178	0.026198	1	3178500	+		54571	22774	38097	38159	59806	59806					0.1033955510006308
NLITRNMNT	9	Unmodified	_NLITRNMNT_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.3090209960938	2	538.77949	1075.54443	-0.93268	-0.00050251	1.4505	0.0007815	0.51783	0.000279	538.7801339194855	64.399	0.9313	64.136	63.754	64.686	-0.2626					46	24	3	0	0	0	0.024374	1	7585	7585		25.574	0	1	956480			54572	10570	38098	38160	59807	59807					0.009677134517232844
NLITWNRV	8	Unmodified	_NLITWNRV_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13;ENST00000512024.5_1_5:893053-908577:+|nuORF	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.8264465332031	2	508.287808	1014.56106	-0.54867	-0.00027888	0.59906	0.0003045	0.050389	2.5612E-05	509.2902588069429	40.572	0.50901	40.423	40.189	40.698	-0.1497					30	13	4	0	0	0	0.027866	1	3497	3497		30.504	0	1	341500			54573	1454	38099	38161	59808	59808					0.05436582399988765
NLIVFARTE	9	Unmodified	_NLIVFARTE_					0	0	0			REV__ENST00000533031.5_1_8:144776853-144777381:+|nuORF	REV__ENST00000533031.5_1_8:144776853-144777381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.2699584960938	2	531.800749	1061.58694	-0.81888	-0.00043548	-4.2609	-0.0022659	-5.0798	-0.0027014	531.7996512685478	74.52	0.16803	74.53	74.397	74.565	0.0096512					5	3	2	0	0	0	0.024405	1	9032	9032		20.947	0	1	52352	+		54574	34592	38100	38162	59809	59809					0.058614318515992636
NLIVPILEE	9	Unmodified	_NLIVPILEE_					0	0	0		nc|ENSG00000115540|Q9Y3A3-2|MOB4;ENSG00000115540|ENST00000323303|MOB4;ENST00000451333.1_1_2:71037932-71038202:-|nuORF;nc|ENSG00000115540|Q9Y3A3-3|MOB4;AGPS-MOB4|1|fusion	nc|ENSG00000115540|Q9Y3A3-2|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8235473632812	2	520.305332	1038.59611	-0.7872	-0.00040959	1.4838	0.00077202	0.69658	0.00036243	520.3063527698812	81.659	0.52675	81.684	81.413	81.94	0.025711					30	12	4	0	0	0	0.024405	1	10134	10134		27.882	2.3082	1	431870			54575	3462	38101	38163	59810	59810					0.07835780417281057
NLIYQTLLKTQ	11	Unmodified	_NLIYQTLLKTQ_					0	0	0			REV__nc|ENSG00000132842|O00203-3|AP3B1	REV__nc|ENSG00000132842|O00203-3|AP3B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.7456970214844	3	445.594127	1333.76055	-0.18786	-8.3711E-05	3.2227	0.001436	3.0348	0.0013523	445.9296710110456	24.405	0.33618	24.23	24.089	24.425	-0.17484					10	7	2	0	0	0	0.024746	1	1079	1079		11.455	0	1	34921	+		54576	23324	38102	38164	59811	59811					0.10702172837227408
NLIYVNTV	8	Unmodified	_NLIYVNTV_					0	0	0			REV__ENSG00000278195|ENST00000610913|SSTR3	REV__ENSG00000278195|ENST00000610913|SSTR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2537536621094	2	468.263468	934.512382	-0.097177	-4.5504E-05	0.82813	0.00038778	0.73095	0.00034228	468.2637271149564	48.8	0.59307	48.8	48.619	49.212	0					20	16	2	0	0	0	0.027866	1	5021	5021		24.203	6.8378	1	169720	+		54577	29214	38103	38165	59812	59812					0.04250669040243338
NLKAKDVL	8	Unmodified	_NLKAKDVL_					0	0	0			REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7789306640625	2	450.779285	899.544017	-0.14084	-6.3486E-05	0.01197	5.396E-06	-0.12887	-5.809E-05	450.7791283381004	30.701	0.74809	30.456	30.163	30.911	-0.24415					48	17	4	0	0	0	0.12879	1	1973	1973		152.63	9.614	1	1326400	+		54578	21216	38104	38166	59813	59813					0.09022661794188025
NLKAKIRTP	9	Unmodified	_NLKAKIRTP_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8099365234375	2	520.832383	1039.65021	-0.48961	-0.000255	-3.2494	-0.0016924	-3.739	-0.0019474	520.8301285005832	53.626	0.67535	53.626	53.267	53.942	0					32	18	3	0	0	0	0.024447	1	5831	5831		32.812	13.709	1	112700			54579	9482;18594	38105	38167	59814	59814					0.13197417359515384
NLKAKPIH	8	Unmodified	_NLKAKPIH_					0	0	0		ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	460.257568359375	2	460.787444	919.560336	-0.36478	-0.00016809	0.46307	0.00021338	0.098291	4.5291E-05	460.7875283033319	37.97	0.2748	37.791	37.665	37.939	-0.17929					11	7	2	0	0	0	0.027866	1	3073	3073		4.3163	0	1	122340			54580	12998	38106	38168	59815	59815					0.09733787750928968
NLKASPSKKP	10	Unmodified	_NLKASPSKKP_					0	0	0			REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3058471679688	2	535.321848	1068.62914	-1.3271	-0.00071041	0.55484	0.00029702	-0.77223	-0.00041339	535.322038640776	48.349	0.51331	48.073	47.812	48.326	-0.27598					22	13	2	0	0	0	0.03519	1	4761	4761		44.377	17.684	1	583570	+		54581	26949	38107	38169	59816	59816					0.09757407259985484
NLKCKPFSW	9	Unmodified	_NLKCKPFSW_					0	0	0		ENST00000431076.5_1_2:155098684-155265690:+|nuORF;nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	ENST00000431076.5_1_2:155098684-155265690:+|nuORF	ENST00000431076.5_1_2:155098684-155265690:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2706298828125	2	561.791869	1121.56919	-0.2437	-0.00013691	-2.5953	-0.001458	-2.839	-0.0015949	561.7906488604101	26.212	0.28271	26.044	25.87	26.153	-0.16816					12	8	2	0	0	0	0.024381	1	1329	1329		45.952	10.334	1	687170			54582	5724	38108	38170	59817	59817					0.013263933251209892
NLKDDDAVFP	10	Unmodified	_NLKDDDAVFP_					0	0	0		ENSG00000214700|ENST00000429849|C12orf71	ENSG00000214700|ENST00000429849|C12orf71	ENSG00000214700|ENST00000429849|C12orf71	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.30419921875	2	567.277303	1132.54005	0.36229	0.00020552	0.21725	0.00012324	0.57954	0.00032876	567.2775093228655	81.675	1.5044	81.446	80.617	82.121	-0.2289					55	35	2	0	0	0	0.03519	1	9695	9695		34.173	15.069	1	1834500			54583	10565	38109	38171	59818	59818					-0.020914724902013404
NLKEDKVTEII	11	Unmodified	_NLKEDKVTEII_					0	0	0			REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7795104980469	3	434.581887	1300.72383	0.55515	0.00024126	0.49975	0.00021718	1.0549	0.00045844	434.5822417697154	47.085	0.33812	46.932	46.858	47.196	-0.15301					10	8	2	0	0	0	0.024747	1	4703	4703		39.873	1.1591	1	114590	+		54584	26264	38110	38172	59819	59819					0.08549876220672559
NLKEEEQLIEL	11	Unmodified	_NLKEEEQLIEL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.2815856933594	3	453.245163	1356.71366	0.038728	1.7553E-05	3.8912	0.0017637	3.9299	0.0017812	453.2467193626315	49.422	0.55099	49.269	49.006	49.557	-0.15277					38	14	4	0	0	0	0.024726	1	5066	5066		38.714	24.628	1	348260			54585	7453	38111	38173	59820	59820					0.049572684954455326
NLKEKALSF	9	Unmodified	_NLKEKALSF_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;ENST00000474094.1_1_6:74502386-74513776:+|nuORF	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3029174804688	2	525.303124	1048.5917	-0.29716	-0.0001561	1.0242	0.00053802	0.72705	0.00038192	525.8053433431396	42.817	1.6428	42.704	41.971	43.614	-0.11253					132	43	5	0	0	0	0.025498	4	3871	3871;3880;3892;3900		145.16	26.752	1	5988700			54586	231	38112	38174	59821;59822;59823;59824	59821					0.06934315994362805
NLKEKALSF	9	Unmodified	_NLKEKALSF_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;ENST00000474094.1_1_6:74502386-74513776:+|nuORF	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3031616210938	2	525.303124	1048.5917	-0.38294	-0.00020116	1.1367	0.00059712	0.75377	0.00039596	525.8054145550801	42.976	1.9436	42.739	42.073	44.017	-0.23736					122	51	4	0	0	0	0.041068	5	3892	3883;3892;3897;3904;3910		132.76	34.128	1	6226200			54587	231	38112	38174	59825;59826;59827;59828;59829	59826					0.06934315994362805
NLKEKALSF	9	Unmodified	_NLKEKALSF_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;ENST00000474094.1_1_6:74502386-74513776:+|nuORF	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3031616210938	2	525.303124	1048.5917	-0.55922	-0.00029376	1.3029	0.00068441	0.74366	0.00039065	525.8055036261687	43.008	1.4855	42.782	42.105	43.591	-0.22597					116	39	5	0	0	0	0.034407	3	3883	3883;3892;3904		138.06	33.316	1	5852500			54588	231	38112	38174	59830;59831;59832	59830					0.06934315994362805
NLKEKGVI	8	Unmodified	_NLKEKGVI_					0	0	0		ENST00000517447.1_1_8:16935303-16948108:+|nuORF;ENSG00000155970|ENST00000318063|MICU3	ENST00000517447.1_1_8:16935303-16948108:+|nuORF	ENST00000517447.1_1_8:16935303-16948108:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7791748046875	2	450.779285	899.544017	-0.14084	-6.3486E-05	0.01197	5.396E-06	-0.12887	-5.809E-05	450.7791283381004	30.701	0.74809	30.456	30.163	30.911	-0.24415					48	17	4	0	0	0	0.35998	1	1985	1985		102.77	0	1	1326400			54589	6503	38113	38175	59833	59833					0.09022661794188025
NLKEKIFIS	9	Unmodified	_NLKEKIFIS_					0	0	0		ENSG00000164038|ENST00000394785|SLC9B2	ENSG00000164038|ENST00000394785|SLC9B2	ENSG00000164038|ENST00000394785|SLC9B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2984619140625	2	546.326599	1090.63865	-0.19368	-0.00010581	0.054873	2.9979E-05	-0.13881	-7.5833E-05	546.326500784792	55.756	1.2305	55.54	55.237	56.468	-0.21607					61	32	3	0	0	0	0.024418	1	5980	5980		54.776	0	1	2492300			54590	7193	38114	38176	59834	59834					0.09695175545516577
NLKEKIFIS	9	Unmodified	_NLKEKIFIS_					0	0	0		ENSG00000164038|ENST00000394785|SLC9B2	ENSG00000164038|ENST00000394785|SLC9B2	ENSG00000164038|ENST00000394785|SLC9B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2981567382812	2	546.326599	1090.63865	-1.4479	-0.00079103	1.2415	0.00067828	-0.20638	-0.00011275	546.3271446343285	55.762	1.1607	55.547	55.234	56.395	-0.21551					64	30	4	0	0	0	0.024405	1	5969	5969		27.882	0	1	2324300			54591	7193	38114	38176	59835	59835					0.09695175545516577
NLKEQHLDC	9	Unmodified	_NLKEQHLDC_					0	0	0		ENST00000424895.1_1_2:19169098-19226432:-|nuORF	ENST00000424895.1_1_2:19169098-19226432:-|nuORF	ENST00000424895.1_1_2:19169098-19226432:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.3045043945312	2	550.263673	1098.51279	0.2041	0.00011231	-0.47292	-0.00026023	-0.26882	-0.00014792	550.263340663119	18.546	0.74222	18.342	18.113	18.856	-0.20371					23	14	3	0	0	0	0.024418	1	367	367		45.972	0	1	69032			54592	14053	38115	38177	59836	59836					-0.03252279302205352
NLKGVSLDL	9	Unmodified	_NLKGVSLDL_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.8155212402344	2	479.782025	957.549496	0.22294	0.00010696	-0.22596	-0.00010841	-0.003021	-1.4494E-06	479.78182721219554	49.731	0.59785	49.58	49.292	49.889	-0.1512					44	15	4	0	0	0	0.022587	1	5085	5085		96.19	24.813	1	1976700			54593	1672	38116	38178	59837	59837					0.06902340586009359
NLKGVSLDL	9	Unmodified	_NLKGVSLDL_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.782025	957.549496	-1.2077	-0.00057944	1.0454	0.00050157	-0.16231	-7.7872E-05	479.78247081207894	49.47	0.52584	49.544	49.242	49.768	0.074192	-0.018742	0.00099167	NaN	96.19	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1899600			54594	1672	38116	38178							0.06902340586009359
NLKHKGKP	8	Unmodified	_NLKHKGKP_					0	0	0			REV__ENSG00000135519|ENST00000257981|KCNH3	REV__ENSG00000135519|ENST00000257981|KCNH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7691345214844	2	461.285069	920.555585	-0.28332	-0.00013069	-0.0063417	-2.9253E-06	-0.28966	-0.00013362	461.284820493111	40.215	0.5848	40.238	39.977	40.562	0.023006					38	15	4	0	0	0	0.027866	1	3474	3474		45.952	1.4209	1	1087900	+		54595	23552	38117	38179	59838	59838					0.09212903608181477
NLKIDRPE	8	Unmodified	_NLKIDRPE_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.81317138671875	2	492.777274	983.539994	-0.70319	-0.00034652	-1.1159	-0.00054989	-1.8191	-0.00089641	492.7771375138463	30.18	0.71156	30.002	29.655	30.366	-0.17818					39	16	3	0	0	0	0.027866	1	1872	1872		102.77	8.7669	1	256310			54596	3667	38118	38180	59839	59839					0.04756572300482276
NLKIQSRNP	9	Unmodified	_NLKIQSRNP_					0	0	0			REV__ENST00000537952.1_1_12:118628187-118628226:-|nuORF	REV__ENST00000537952.1_1_12:118628187-118628226:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.3191528320312	2	535.309272	1068.60399	-0.11401	-6.103E-05	-0.91477	-0.00048968	-1.0288	-0.00055071	535.3089361939411	33.385	0.37025	33.442	33.245	33.615	0.056572					13	9	2	0	0	0	0.024405	1	2381	2381		35.618	12.576	1	120290	+		54597	34706	38119	38181	59840	59840					0.07243352457408037
NLKISIPML	9	Unmodified	_NLKISIPML_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8154296875	2	514.81227	1027.60999	-0.98229	-0.0005057	-3.3365	-0.0017177	-4.3188	-0.0022233	514.8106088373758	44.861	0.27401	44.761	44.594	44.868	-0.099449					10	6	2	0	0	0	0.024374	1	4220	4220		40.778	0	1	55902			54598	10535	38120	38182	59841	59841					0.0972873464472741
NLKISIPML	9	Unmodified	_NLKISIPML_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.8151245117188	2	514.81227	1027.60999	-0.62029	-0.00031933	-2.3197	-0.0011942	-2.94	-0.0015136	514.8105707678196	44.906	0.27528	44.695	44.595	44.871	-0.21109					9	6	2	0	0	0	0.024427	1	4206	4206		34.173	0	1	61415			54599	10535	38120	38182	59842	59842					0.0972873464472741
NLKKFTAYF	9	Unmodified	_NLKKFTAYF_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.3131713867188	2	566.313492	1130.61243	-0.5506	-0.00031181	-0.0837	-4.7401E-05	-0.6343	-0.00035921	566.3132718329502	34.672	1.0637	34.489	34.161	35.224	-0.18293					70	26	4	0	0	0	0.17822	1	2545	2545		93.195	10.955	1	2849800			54600	5893	38121	38183	59843	59843					0.05234906374039383
NLKKGNIVK	9	Unmodified	_NLKKGNIVK_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.80023193359375	2	507.326934	1012.63931	-0.39066	-0.00019819	-2.4793	-0.0012578	-2.8699	-0.001456	507.32672812395236	31.08	0.40045	30.928	30.724	31.124	-0.15231					21	9	3	0	0	0	0.022756	1	2013	2013		68.787	2.9837	1	120380			54601	1388	38122	38184	59844	59844					0.13350014985246617
NLKKKSYL	8	Unmodified	_NLKKKSYL_					0	0	0		ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.3075866699219	2	497.30821	992.601866	0.24219	0.00012044	-0.54478	-0.00027092	-0.30259	-0.00015048	497.30789226637944	21.935	1.2192	21.746	21.434	22.653	-0.18894					62	25	5	0	0	0	0.34573	3	725	725;737;749		104.75	11.551	1	1865900			54602	3832	38123	38185	59845;59846;59847	59845					0.10526923719623937
NLKKKSYL	8	Unmodified	_NLKKKSYL_					0	0	0		ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.3076171875	2	497.30821	992.601866	-0.40273	-0.00020028	0.056446	2.8071E-05	-0.34628	-0.00017221	497.308181555804	22.067	0.84229	21.877	21.613	22.455	-0.19072					51	17	5	0	0	0	0.47665	2	736	736;748		87.754	5.4493	1	1673400			54603	3832	38123	38185	59848;59849	59848					0.10526923719623937
NLKKKSYL	8	Unmodified	_NLKKKSYL_					0	0	0		ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.3078308105469	2	497.30821	992.601866	-0.61668	-0.00030668	0.23986	0.00011928	-0.37682	-0.0001874	497.30829867563693	22.034	1.0917	21.832	21.469	22.561	-0.20199					59	22	5	0	0	0	0.36844	2	711	703;711		101.6	11.231	1	1673400			54604	3832	38123	38185	59850;59851	59851					0.10526923719623937
NLKKKSYL	8	Unmodified	_NLKKKSYL_					0	0	0		ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.30821	992.601866	-0.89169	-0.00044345	1.2038	0.00059868	0.31215	0.00015524	497.30798264512015	21.932	0.38915	22.003	21.781	22.17	0.071487	0.13878	0.0012626	NaN	104.75	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11710			54605	3832	38123	38185							0.10526923719623937
NLKKKTDL	8	Unmodified	_NLKKKTDL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197139871-197142331|461|11.21|0.54|4.37|-|2|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.29766845703125	2	480.297842	958.581131	0.85881	0.00041248	-1.229	-0.00059029	-0.37019	-0.0001778	480.29719470424493	19.17	0.7421	19.009	18.589	19.331	-0.16079					31	14	4	0	0	0	0.34573	2	389	389;400		104.75	8.8298	1	1301000			54606	1335	38124	38186	59852;59853	59852					0.10018333339962737
NLKKKTDL	8	Unmodified	_NLKKKTDL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197139871-197142331|461|11.21|0.54|4.37|-|2|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.29754638671875	2	480.297842	958.581131	0.54178	0.00026022	-0.72138	-0.00034648	-0.1796	-8.6261E-05	480.29742495686094	19.281	0.59593	19.081	18.859	19.455	-0.2001					35	11	5	0	0	0	0.38451	1	387	387		99.375	1.9023	1	1077000			54607	1335	38124	38186	59854	59854					0.10018333339962737
NLKKKTDL	8	Unmodified	_NLKKKTDL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197139871-197142331|461|11.21|0.54|4.37|-|2|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2973327636719	2	480.297842	958.581131	2.1068	0.0010119	-2.3136	-0.0011112	-0.2068	-9.9327E-05	480.2966729074375	19.235	0.7917	19.002	18.78	19.572	-0.23345					37	15	4	0	0	0	0.42912	2	365	365;388		93.195	13.744	1	1123000			54608	1335	38124	38186	59855;59856	59855					0.10018333339962737
NLKKQTNKN	9	Unmodified	_NLKKQTNKN_					0	0	0		ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.3281860351562	2	544.314554	1086.61456	-0.0060451	-3.2904E-06	-3.3934	-0.0018471	-3.3995	-0.0018504	544.3127154929332	72.38	0.37944	72.099	71.882	72.262	-0.28124					12	9	2	0	0	0	0.024418	1	8773	8773		37.812	4.9991	1	116120			54609	3075	38125	38187	59857	59857					0.07471335111858934
NLKKRAGCPQ	10	Unmodified	_NLKKRAGCPQ_					0	0	0		ENST00000466692.1_1_4:1576229-1581935:-|nuORF	ENST00000466692.1_1_4:1576229-1581935:-|nuORF	ENST00000466692.1_1_4:1576229-1581935:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.2750244140625	2	557.811125	1113.6077	-0.2869	-0.00016004	-0.14437	-8.0534E-05	-0.43128	-0.00024057	557.8106407337625	31.917	0.4003	31.917	31.669	32.07	0					11	9	2	0	0	0	0.03519	1	2157	2157		49.442	7.0454	1	52589			54610	14820	38126	38188	59858	59858					0.055436989596273634
NLKLKLHSF	9	Unmodified	_NLKLKLHSF_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.7403564453125	2	550.334759	1098.65496	-0.20134	-0.0001108	0.091595	5.0408E-05	-0.10974	-6.0395E-05	550.3345801117775	42.761	0.7529	42.648	42.281	43.034	-0.11253					37	19	3	0	0	0	0.024367	1	3872	3872		52.937	0	1	556810			54611	6950	38127	38189	59859	59859					0.10958301502250833
NLKLKLHSF	9	Unmodified	_NLKLKLHSF_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.334759	1098.65496	-0.34781	-0.00019141	0.14177	7.8022E-05	-0.20604	-0.00011339	550.3346737910056	42.937	0.64404	42.699	42.38	43.024	-0.23736	-0.0084819	-8.7256E-05	NaN	52.937	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713980			54612	6950	38127	38189							0.10958301502250833
NLKLLLPPL	9	Unmodified	_NLKLLLPPL_					0	0	0			REV__ENSG00000135372|ENST00000257829|NAT10	REV__ENSG00000135372|ENST00000257829|NAT10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.79058837890625	2	510.844428	1019.6743	-0.4984	-0.00025461	0.12248	6.257E-05	-0.37592	-0.00019204	510.8441885898017	82.748	0.68587	82.748	82.279	82.965	0					22	15	2	0	0	0	0.024535	1	10310	10310		18.324	0.95945	1	43760	+		54613	23536	38128	38190	59860	59860					0.1652525779318239
NLKNIKNLI	9	Unmodified	_NLKNIKNLI_					0	0	0			REV__L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|6|3|sense	REV__L1M5_dup13748|chr4:86821427-86821643:+|1.0197471668281142|0.2476903013751912|2.04|518.0|6|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3052978515625	2	535.340041	1068.66553	-0.84828	-0.00045412	1.3283	0.0007111	0.48004	0.00025699	535.3406757907546	47.688	0.8468	47.688	47.464	48.311	0					42	25	3	0	0	0	0.024323	1	4813	4813		63.306	2.3343	1	1746300	+		54614	36196	38129	38191	59861	59861					0.1339428415672046
NLKNLKSLDLF	11	Unmodified	_NLKNLKSLDLF_					0	0	0		ENSG00000143401|ENST00000583931|ANP32E;nc|ENSG00000143401|Q9BTT0-2|ANP32E;nc|ENSG00000143401|Q9BTT0-3|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	ENSG00000143401|ENST00000583931|ANP32E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.27392578125	3	435.590605	1303.74999	-0.86414	-0.00037641	1.8466	0.00080435	0.98244	0.00042794	435.591278782007	60.558	0.39951	60.382	60.198	60.597	-0.1761					14	9	2	0	0	0	0.024731	1	6727	6727		37.508	7.9574	1	144670			54615	5647	38130	38192	59862	59862					0.11026190182792561
NLKNQLIL	8	Unmodified	_NLKNQLIL_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1;ENST00000466806.5_1_7:81634729-81641553:-|nuORF	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.79461669921875	2	478.300384	954.586216	-0.47201	-0.00022576	0.42925	0.00020531	-0.042765	-2.0455E-05	478.3004641794885	64.935	0.50662	64.935	64.617	65.124	0					18	13	2	0	0	0	0.027866	1	7656	7656		33.516	0	1	1117800			54616	6370	38131	38193	59863	59863					0.10710637202578255
NLKPEDVFL	9	Unmodified	_NLKPEDVFL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7970581054688	2	537.795132	1073.57571	-0.45908	-0.00024689	3.7478	0.0020156	3.2887	0.0017687	537.7970207667825	77.615	3.0284	77.615	76.799	79.828	0					167	72	3	0	0	0	0.16468	1	9598	9598		96.19	16.478	1	2444300	+		54617	20777	38132	38194	59864	59864					0.0418660975747116
NLKPNGSLD	9	Unmodified	_NLKPNGSLD_					0	0	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2637023925781	2	479.253631	956.49271	-0.28904	-0.00013853	-0.19347	-9.2722E-05	-0.48252	-0.00023125	479.25357868964727	38.554	1.1016	38.471	38.149	39.251	-0.082516					42	29	2	0	0	0	0.024025	1	3261	3261		52.937	13.684	1	668980	+		54618	27504	38133	38195	59865	59865					0.012722930294785328
NLKQCKMSL	9	Oxidation (M)	_NLKQCKM(Oxidation (M))SL_		NLKQCKM(1)SL		NLKQCKM(99)SL	0	0	1		ENSG00000115457|ENST00000233809|IGFBP2;ENST00000436812.1_3_2:217526523-217528824:+|nuORF	ENSG00000115457|ENST00000233809|IGFBP2	ENSG00000115457|ENST00000233809|IGFBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7803344726562	2	540.780644	1079.54674	-1.342	-0.00072574	1.1755	0.00063571	-0.16649	-9.0035E-05	540.781171006324	28.291	0.85553	28.139	27.885	28.74	-0.15195					44	20	3	0	0	0	0.15029	1	1608	1608		99.375	22.057	1	1741000			54619	3448	38134	38196	59866	59866		133			0.010144258651962446
NLKRQKLL	8	Unmodified	_NLKRQKLL_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2800598144531	2	506.834926	1011.6553	-0.07784	-3.9452E-05	-1.0653	-0.00053995	-1.1432	-0.0005794	506.8348398571889	50.094	0.32019	49.943	49.745	50.065	-0.1512					15	8	3	0	0	0	0.027866	1	5211	5211		17.365	0	1	97492	+		54620	24301	38135	38197	59867	59867					0.14993721222128897
NLKSLLELA	9	Unmodified	_NLKSLLELA_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2833557128906	2	500.8055	999.596446	-0.36863	-0.00018461	0.13172	6.5967E-05	-0.23691	-0.00011865	500.8057939982962	37.665	0.76331	37.697	37.264	38.028	0.032269					39	20	3	0	0	0	0.024292	1	3074	3074		58.782	8.7574	1	591870	+		54621	20653	38136	38198	59868	59868					0.09663200137129024
NLKSLLELA	9	Unmodified	_NLKSLLELA_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.8055	999.596446	-0.53923	-0.00027005	0.1882	9.4251E-05	-0.35103	-0.0001758	500.80551465979937	37.522	0.60819	37.459	37.014	37.622	-0.063389	-0.13139	-8.7407E-06	NaN	58.782	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508490	+		54622	20653	38136	38198							0.09663200137129024
NLKSYRKL	8	Unmodified	_NLKSYRKL_					0	0	0		ENST00000598497.1_1_19:58598201-58598612:-|nuORF;ENST00000596372.1_1_19:58596054-58598820:-|nuORF;nc|ENSG00000121413|Q8TBC5-4|ZSCAN18;nc|ENSG00000121413|Q8TBC5-2|ZSCAN18;ENSG00000121413|ENST00000601144|ZSCAN18;nc|ENSG00000121413|Q8TBC5-3|ZSCAN18	ENST00000598497.1_1_19:58598201-58598612:-|nuORF	ENST00000598497.1_1_19:58598201-58598612:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2536010742188	2	511.311284	1020.60801	-0.51899	-0.00026536	0.22407	0.00011457	-0.29492	-0.0001508	511.3113268789923	54.811	0.62458	54.811	54.524	55.149	0					38	17	3	0	0	0	0.027866	1	5993	5993		24.519	0	1	1119000			54623	17472	38137	38199	59869	59869					0.09853441951145214
NLKTNWTE	8	Unmodified	_NLKTNWTE_					0	0	0		ENST00000433058.1_1_1:225636110-225652972:-|nuORF	ENST00000433058.1_1_1:225636110-225652972:-|nuORF	ENST00000433058.1_1_1:225636110-225652972:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2537841796875	2	503.253631	1004.49271	-0.80659	-0.00040592	0.40512	0.00020388	-0.40147	-0.00020204	503.25388626320927	44.615	1.7053	44.615	44.281	45.986	0					129	49	4	0	0	0	0.83003	1	4264	4264		56.721	5.3856	1	4842200			54624	14216	38138	38200	59870	59870					-0.009357069705174581
NLKVHPVPLLL	11	Unmodified	_NLKVHPVPLLL_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.8991088867188	2	621.900266	1241.78598	0.28795	0.00017907	0.49143	0.00030562	0.77938	0.0004847	621.9003556983982	105.24	0.4091	105.24	105.02	105.43	0.00096893					30	12	3	0	0	0	1.0685	1	13493	13493		19.997	1.7347	1	2214000	+		54625	24140	38139	38201	59871	59871					0.1747569215033309
NLKVKVLF	8	Unmodified	_NLKVKVLF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.8161926269531	2	480.81567	959.616788	-0.5154	-0.00024781	0.16077	7.7299E-05	-0.35463	-0.00017051	480.81559199813586	53.736	1.4903	53.6	53.281	54.771	-0.13616					106	43	4	0	0	0	0.27193	3	5652	5640;5652;5666		123.99	27.941	1	7296200			54626	3443	38140	38202	59872;59873;59874	59873					0.13536415587623196
NLKVKVLF	8	Unmodified	_NLKVKVLF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.81561279296875	2	480.81567	959.616788	-0.23747	-0.00011418	-0.1654	-7.9528E-05	-0.40288	-0.00019371	480.8154633987689	53.889	1.529	53.644	53.383	54.912	-0.2453					92	45	4	0	0	0	0.12427	3	5670	5659;5670;5683		153.88	57.837	1	7464400			54627	3443	38140	38202	59875;59876;59877	59876					0.13536415587623196
NLKVKVLF	8	Unmodified	_NLKVKVLF_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.8152160644531	2	480.81567	959.616788	-0.063836	-3.0693E-05	-0.3027	-0.00014554	-0.36654	-0.00017624	480.8153904982512	53.781	1.6371	53.583	53.312	54.949	-0.19739					94	46	4	0	0	0	0.30538	2	5645	5645;5671		110.34	27.05	1	6932800			54628	3443	38140	38202	59878;59879	59878					0.13536415587623196
NLKWTIKC	8	Unmodified	_NLKWTIKC_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|70|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|70|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2550354003906	2	503.281137	1004.54772	-0.75437	-0.00037966	1.781	0.00089635	1.0266	0.00051669	503.282310045258	38.671	0.67159	38.449	38.221	38.892	-0.22149					28	17	2	0	0	0	0.027866	1	3269	3269		17.365	0	1	208610	+		54629	36259	38141	38203	59880	59880					0.04563008296406679
NLLAIRLAFVI	11	Unmodified	_NLLAIRLAFVI_					0	0	0		ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7	ENSG00000146205|ENST00000674324|ANO7	ENSG00000146205|ENST00000674324|ANO7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.9010620117188	2	621.900266	1241.78598	0.28795	0.00017907	0.49143	0.00030562	0.77938	0.0004847	621.9003556983982	105.24	0.4091	105.24	105.02	105.43	0.00096893					30	12	3	0	0	0	1.0483	1	13456	13456		25.574	6.4705	1	2214000			54630	5862	38142	38204	59881	59881					0.1747569215031035
NLLASVPAGAF	11	Unmodified	_NLLASVPAGAF_					0	0	0		ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	ENSG00000126243|ENST00000246529|LRFN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2788696289062	2	530.295299	1058.57605	-0.74336	-0.0003942	1.8579	0.00098524	1.1145	0.00059104	530.2968560146664	69.371	0.22632	69.371	69.238	69.464	0					8	5	2	0	0	0	0.024747	1	8351	8351		39.253	18.306	1	116840			54631	4187	38143	38205	59882	59882					0.049100294773325004
NLLAVHFG	8	Unmodified	_NLLAVHFG_					0	0	0			REV__ENST00000504674.1_1_5:39719945-39720791:-|nuORF	REV__ENST00000504674.1_1_5:39719945-39720791:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7718811035156	2	435.745245	869.475937	-0.84278	-0.00036724	-3.2232	-0.0014045	-4.066	-0.0017717	435.74378181974896	25.232	0.49173	25.198	24.86	25.351	-0.034395					20	11	2	0	0	0	0.027866	1	1161	1161		13.775	0	1	82643	+		54632	33987	38144	38206	59883	59883					0.0359783693419331
NLLCKTRP	8	Unmodified	_NLLCKTRP_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.3121032714844	2	472.770937	943.527321	-0.70161	-0.0003317	-2.2942	-0.0010847	-2.9959	-0.0014164	472.76989497188697	45.037	0.31315	44.826	44.637	44.95	-0.21109					10	7	2	0	0	0	0.027866	1	4211	4211		85.359	16.875	1	72001	+		54633	21525	38145	38207	59884	59884					0.053298376365887634
NLLDDLAQSD	10	Unmodified	_NLLDDLAQSD_					0	0	0		nc|ENSG00000150773|Q8WWB5-3|PIH1D2;nc|ENSG00000150773|Q8WWB5-2|PIH1D2;ENSG00000150773|ENST00000280350|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.302001953125	2	552.264393	1102.51423	-0.041741	-2.3052E-05	2.8031	0.001548	2.7613	0.001525	552.7678846042802	70.213	0.16318	69.962	69.9	70.063	-0.25063					5	3	2	0	0	0	0.03519	1	8185	8185		28.081	8.8188	1	30306			54634	6155	38146	38208	59885	59885					-0.03292366732443952
NLLDFPLPL	9	Unmodified	_NLLDFPLPL_					0	0	0			REV__nc|ENSG00000116218|Q9NP85-2|NPHS2	REV__nc|ENSG00000116218|Q9NP85-2|NPHS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3018188476562	2	521.302593	1040.59063	-0.74576	-0.00038877	-3.2957	-0.001718	-4.0414	-0.0021068	521.3007347232244	60.95	0.74994	60.737	60.31	61.06	-0.21339					52	19	3	0	0	0	0.23085	1	7021	7021		84.916	2.165	1	6106600	+		54635	22271	38147	38209	59886	59886					0.07196101625481788
NLLDFPLPL	9	Unmodified	_NLLDFPLPL_					0	0	0			REV__nc|ENSG00000116218|Q9NP85-2|NPHS2	REV__nc|ENSG00000116218|Q9NP85-2|NPHS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.301513671875	2	521.302593	1040.59063	-1.5643	-0.00081549	-2.4614	-0.0012831	-4.0257	-0.0020986	521.3011782946406	60.612	0.96732	60.691	60.28	61.247	0.078884					67	25	4	0	0	0	0.27161	1	6910	6910		79.451	6.5718	1	6281700	+		54636	22271	38147	38209	59887	59887					0.07196101625481788
NLLDLDYEL	9	Unmodified	_NLLDLDYEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.2821044921875	2	554.282054	1106.54956	0.11486	6.3663E-05	-0.44724	-0.0002479	-0.33239	-0.00018424	554.2817557567922	93.573	0.90834	93.573	93.219	94.128	0					53	21	3	0	0	0	0.03666	2	11880	11880;11891		136.27	45.898	1	1328800			54637	7065	38148	38210	59888;59889	59888					0.0005429579534848017
NLLDLDYEL	9	Unmodified	_NLLDLDYEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.28173828125	2	554.282054	1106.54956	-0.71841	-0.0003982	0.35769	0.00019826	-0.36071	-0.00019994	554.2821426582938	93.489	0.90668	93.484	93.2	94.107	-0.0042038					53	21	4	0	0	0	0.020687	2	11839	11839;11848		148.99	55.791	1	1501900			54638	7065	38148	38210	59890;59891	59890					0.0005429579534848017
NLLDLDYEL	9	Unmodified	_NLLDLDYEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.2818603515625	2	554.282054	1106.54956	-0.44781	-0.00024821	0.19872	0.00011015	-0.24909	-0.00013807	554.2821003844982	93.577	0.98926	93.583	93.181	94.17	0.0059967					54	23	4	0	0	0	0.020687	2	11804	11804;11815		148.99	47.386	1	1557000			54639	7065	38148	38210	59892;59893	59892					0.0005429579534848017
NLLDLDYEL	9	Unmodified	_NLLDLDYEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.281982421875	2	554.282054	1106.54956	0.15233	8.4434E-05	-0.31019	-0.00017193	-0.15786	-8.75E-05	554.2816767480912	93.549	1.4071	93.427	93.06	94.467	-0.12215					92	32	4	0	0	0	0.013065	4	11512	11502;11512;11524;11538		190.52	81.162	1	3510500			54640	7065	38148	38210	59894;59895;59896;59897	59895					0.0005429579534848017
NLLDLDYEL	9	Unmodified	_NLLDLDYEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.2821044921875	2	554.282054	1106.54956	-0.16939	-9.3891E-05	-0.11782	-6.5308E-05	-0.28722	-0.0001592	554.2817919338014	93.605	1.4558	93.461	93.089	94.545	-0.1441					89	33	4	0	0	0	0.013293	5	11509	11487;11498;11509;11523;11536		176.09	71.34	1	3753400			54641	7065	38148	38210	59898;59899;59900;59901;59902	59900					0.0005429579534848017
NLLDLLTEV	9	Unmodified	_NLLDLLTEV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2954711914062	2	515.294965	1028.57538	0.68358	0.00035225	-0.96265	-0.00049605	-0.27906	-0.0001438	515.2943325301442	106.9	0.75095	106.9	106.68	107.43	0					61	22	4	0	0	0	0.015752	5	13739	13711;13720;13729;13739;13749		215.39	71.504	1	871480			54642	5425	38149	38211	59903;59904;59905;59906;59907	59906					0.06223190037621862
NLLDLLTEV	9	Unmodified	_NLLDLLTEV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2959594726562	2	515.294965	1028.57538	0.044951	2.3163E-05	-0.54437	-0.00028051	-0.49942	-0.00025735	515.2943755826012	106.92	0.88869	106.92	106.4	107.29	-0.003479					55	27	3	0	0	0	0.013065	6	13678	13661;13670;13678;13686;13693;13705		185.55	69.931	1	576860			54643	5425	38149	38211	59908;59909;59910;59911;59912;59913	59910					0.06223190037621862
NLLDLLTEV	9	Unmodified	_NLLDLLTEV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2950439453125	2	515.294965	1028.57538	-0.42315	-0.00021804	0.35577	0.00018333	-0.067376	-3.4718E-05	515.2950052701376	107.01	0.68676	107.01	106.78	107.47	0.0018387					47	19	3	0	0	0	0.013293	6	13663	13639;13644;13655;13663;13673;13687		185.55	54.518	1	726980			54644	5425	38149	38211	59914;59915;59916;59917;59918;59919	59917					0.06223190037621862
NLLDLLTEV	9	Unmodified	_NLLDLLTEV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2953491210938	2	515.294965	1028.57538	-0.13206	-6.8052E-05	0.080364	4.1411E-05	-0.051699	-2.664E-05	515.2948357165151	106.85	0.84128	106.73	106.51	107.35	-0.1238					77	28	5	0	0	0	0.014034	6	13288	13270;13278;13288;13297;13306;13316		200.16	52.114	1	1641300			54645	5425	38149	38211	59920;59921;59922;59923;59924;59925	59922					0.06223190037621862
NLLDLLTEV	9	Unmodified	_NLLDLLTEV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2950439453125	2	515.294965	1028.57538	0.60947	0.00031406	-0.71232	-0.00036706	-0.10285	-5.2998E-05	515.2944406904741	106.99	0.72258	106.83	106.58	107.3	-0.15772					85	28	4	0	0	0	0.013065	8	13292	13261;13267;13274;13282;13292;13300;13308;13318		195.81	69.931	1	947780			54646	5425	38149	38211	59926;59927;59928;59929;59930;59931;59932;59933	59930					0.06223190037621862
NLLDPSLSW	9	Unmodified	_NLLDPSLSW_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7971801757812	2	522.771657	1043.52876	-0.44751	-0.00023394	2.0952	0.0010953	1.6477	0.00086135	523.2737237798431	44.913	0.39705	44.661	44.429	44.826	-0.25252					14	9	2	0	0	0	0.024457	1	4183	4183		37.159	8.0096	1	218920	+		54647	20681	38150	38212	59934	59934					0.008737502063468128
NLLDVPVP	8	Unmodified	_NLLDVPVP_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.7515869140625	2	433.752736	865.490919	-0.11927	-5.1733E-05	-2.6732	-0.0011595	-2.7925	-0.0012112	433.7514853429107	20.01	1.9787	19.905	19.066	21.045	-0.10477					82	40	3	0	0	0	0.89627	2	482	459;482		51.335	3.4199	1	1132100			54648	1851	38151	38213	59935;59936	59936					0.052792840115330364
NLLEEVFHL	9	Unmodified	_NLLEEVFHL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3006591796875	2	557.300581	1112.58661	-1.6763	-0.00093423	2.2351	0.0012456	0.55878	0.00031141	557.301615806658	92.862	0.76919	92.718	92.406	93.175	-0.14356					46	17	3	0	0	0	0.077175	1	11417	11417		118.74	10.656	1	788180			54649	7346	38152	38214	59937	59937					0.03482012131780721
NLLEEVFHL	9	Unmodified	_NLLEEVFHL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3010864257812	2	557.300581	1112.58661	-0.023218	-1.2939E-05	0.53199	0.00029648	0.50877	0.00028354	557.3006906893698	92.898	0.90498	92.775	92.505	93.41	-0.12242					53	20	4	0	0	0	0.033448	2	11436	11436;11447		138.83	48.049	1	800560			54650	7346	38152	38214	59938;59939	59938					0.03482012131780721
NLLEEVFHL	9	Unmodified	_NLLEEVFHL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.30126953125	2	557.300581	1112.58661	-0.13592	-7.5747E-05	0.55306	0.00030822	0.41714	0.00023247	557.3006499463489	93.035	0.64651	92.891	92.618	93.264	-0.14411					47	14	5	0	0	0	0.016871	1	11432	11432		152.47	58.873	1	784890			54651	7346	38152	38214	59940	59940					0.03482012131780721
NLLEFAET	8	Unmodified	_NLLEFAET_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-9|MYB	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.76470947265625	2	468.737283	935.460012	0.28656	0.00013432	4.3893	0.0020574	4.6758	0.0021917	468.73943029072973	72.581	1.0117	72.581	72.17	73.182	0					32	24	2	0	0	0	0.027866	1	8783	8783		33.516	0	1	115430			54652	3688	38153	38215	59941	59941					-0.010299140933739181
NLLEFAET	8	Unmodified	_NLLEFAET_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-9|MYB	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.737283	935.460012	0.73721	0.00034556	3.5159	0.001648	4.2531	0.0019936	468.7390079443081	72.887	1.149	72.606	72.262	73.411	-0.28124	0.012267	-0.000525	NaN	33.516	34	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151240			54653	3688	38153	38215							-0.010299140933739181
NLLEIAPHL	9	Unmodified	_NLLEIAPHL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.29705810546875	2	510.297842	1018.58113	-0.2821	-0.00014396	-0.058144	-2.9671E-05	-0.34024	-0.00017363	510.2979263487404	73.123	0.90768	73.132	72.611	73.519	0.0096512					60	22	5	0	0	0	0.012965	2	8850	8838;8850		187.63	93.627	1	2337900			54654	3414	38154	38216	59942;59943	59943					0.07258333339939327
NLLEIAPHL	9	Unmodified	_NLLEIAPHL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.27667236328125	2	510.297842	1018.58113	-0.23938	-0.00012215	-0.24762	-0.00012636	-0.487	-0.00024851	510.2977450791309	73.372	0.94638	73.095	72.497	73.443	-0.2769					37	22	3	0	0	0	0.022832	1	8602	8602		104.75	11.551	1	557620			54655	3414	38154	38216	59944	59944					0.07258333339939327
NLLEIAPHL	9	Unmodified	_NLLEIAPHL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2764892578125	2	510.297842	1018.58113	-0.47817	-0.00024401	0.1155	5.8937E-05	-0.36268	-0.00018507	510.29802321621986	73.16	0.68351	72.97	72.633	73.316	-0.19026					28	16	3	0	0	0	0.018983	1	8581	8581		104.75	22.506	1	545050			54656	3414	38154	38216	59945	59945					0.07258333339939327
NLLEIAPHL	9	Unmodified	_NLLEIAPHL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.297842	1018.58113	-0.7585	-0.00038706	0.39381	0.00020096	-0.36469	-0.0001861	510.29810095672434	73.142	0.90192	73.142	72.614	73.516	0	0.040588	0.00035389	NaN	187.63	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2151400			54657	3414	38154	38216							0.07258333339939327
NLLEIAPHL	9	Unmodified	_NLLEIAPHL_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.297842	1018.58113	-0.27102	-0.0001383	-0.036321	-1.8535E-05	-0.30734	-0.00015683	510.29784616548653	73.442	0.69557	73.17	72.842	73.538	-0.27126	0.068426	-8.5091E-05	NaN	187.63	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2690300			54658	3414	38154	38216							0.07258333339939327
NLLERVLF	8	Unmodified	_NLLERVLF_					0	0	0			REV__ENSG00000103544|ENST00000417362|VPS35L	REV__ENSG00000103544|ENST00000417362|VPS35L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7538146972656	2	502.300384	1002.58622	-0.59827	-0.00030051	-3.9221	-0.0019701	-4.5204	-0.0022706	502.2981434482694	30.873	0.37537	30.695	30.497	30.872	-0.17818					17	8	3	0	0	0	0.027866	1	2011	2011		18.324	0	1	231000	+		54659	21395	38155	38217	59946	59946					0.08502637202570895
NLLFAFTK	8	Unmodified	_NLLFAFTK_					0	0	0		ENST00000375888.5_1_10:27504564-27506938:-|nuORF	ENST00000375888.5_1_10:27504564-27506938:-|nuORF	ENST00000375888.5_1_10:27504564-27506938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.7582092285156	2	477.276378	952.538203	0.58162	0.0002776	-4.2092	-0.0020089	-3.6275	-0.0017313	477.2742271393309	37.232	0.49257	37.039	36.697	37.19	-0.193					22	12	3	0	0	0	0.027866	1	2984	2984		49.442	13.823	1	272890			54660	13172	38156	38218	59947	59947					0.06003563282513369
NLLFAFTK	8	Unmodified	_NLLFAFTK_					0	0	0		ENST00000375888.5_1_10:27504564-27506938:-|nuORF	ENST00000375888.5_1_10:27504564-27506938:-|nuORF	ENST00000375888.5_1_10:27504564-27506938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7583312988281	2	477.276378	952.538203	-0.86946	-0.00041497	-3.4255	-0.0016349	-4.2949	-0.0020499	477.2745288996346	37.184	0.50542	36.964	36.726	37.231	-0.2195					26	12	3	0	0	0	0.027866	1	2975	2975		29.15	0	1	241450			54661	13172	38156	38218	59948	59948					0.06003563282513369
NLLFCVIP	8	Unmodified	_NLLFCVIP_					0	0	0			REV__ENSG00000184194|ENST00000332582|GPR173	REV__ENSG00000184194|ENST00000332582|GPR173	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2408752441406	2	459.759507	917.50446	-0.049575	-2.2793E-05	2.5497	0.0011723	2.5001	0.0011495	459.7606015356335	85.885	1.0218	85.827	85.563	86.585	-0.05761					34	23	3	0	0	0	0.027866	1	10752	10752		19.36	0	1	302510	+		54662	27643	38157	38219	59949	59949					0.042408185191106895
NLLFKIKP	8	Unmodified	_NLLFKIKP_					0	0	0		ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121	ENST00000528683.5_1_11:71640101-71701796:+|nuORF	ENST00000528683.5_1_11:71640101-71701796:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.28741455078125	2	486.81567	971.616788	-0.46025	-0.00022406	-4.3843	-0.0021344	-4.8446	-0.0023584	486.81357582248984	28.792	0.30233	28.623	28.467	28.769	-0.16897					9	6	2	0	0	0	0.027866	1	1722	1722		33.516	8.0654	1	32624			54663	5134	38158	38220	59950	59950					0.12984415587595777
NLLFKQCID	9	Unmodified	_NLLFKQCID_					0	0	0			REV__nc|ENSG00000132155|P04049-2|RAF1	REV__nc|ENSG00000132155|P04049-2|RAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2553100585938	2	547.289159	1092.56377	-1.4038	-0.00076827	1.2142	0.00066453	-0.18956	-0.00010374	547.2899306486288	65.468	0.74092	65.254	64.971	65.712	-0.21327					55	17	4	0	0	0	0.024427	1	7548	7548		34.173	0	1	612450	+		54664	23256	38159	38221	59951	59951					0.021186697426401224
NLLFKQCID	9	Unmodified	_NLLFKQCID_					0	0	0			REV__nc|ENSG00000132155|P04049-2|RAF1	REV__nc|ENSG00000132155|P04049-2|RAF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.289159	1092.56377	-0.48211	-0.00026385	-0.033127	-1.813E-05	-0.51524	-0.00028198	547.2891920583905	65.531	0.74325	65.289	65.004	65.748	-0.24145	0.025071	-0.00068993	NaN	19.997	50	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605910	+		54665	23256	38159	38221							0.021186697426401224
NLLFMVVLGE	10	Unmodified	_NLLFMVVLGE_					0	0	0		ENST00000420726.5_1_11:5368136-5526672:-|nuORF	ENST00000420726.5_1_11:5368136-5526672:-|nuORF	ENST00000420726.5_1_11:5368136-5526672:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.300048828125	2	567.81501	1133.61547	-1.0711	-0.00060819	3.5333	0.0020063	2.4622	0.0013981	568.3180146074376	66.758	0.34204	66.784	66.644	66.986	0.025169					14	7	2	0	0	0	0.03519	1	7885	7885		34.173	0	1	138880			54666	13979	38160	38222	59952	59952					0.05400413436541385
NLLFQDCE	8	Unmodified	_NLLFQDCE_					0	0	0		nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2713623046875	2	491.220943	980.427332	1.0441	0.00051287	3.3268	0.0016342	4.3709	0.0021471	491.22241088167596	63.139	0.31985	63.193	63.054	63.373	0.054104					12	8	2	0	0	0	0.027866	1	7274	7274		24.203	0	1	94186			54667	4983	38161	38223	59953	59953					-0.06366444487889567
NLLFQDCE	8	Unmodified	_NLLFQDCE_					0	0	0		nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.220943	980.427332	-0.5237	-0.00025725	4.0632	0.0019959	3.5395	0.0017387	491.2221765628533	63.477	0.2298	63.249	63.174	63.404	-0.22773	-0.0021954	0.00032444	NaN	24.203	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56266			54668	4983	38161	38223							-0.06366444487889567
NLLFQDCE	8	Unmodified	_NLLFQDCE_					0	0	0		nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.220943	980.427332	0.0043772	2.1502E-06	2.6879	0.0013204	2.6923	0.0013225	491.22231119073325	63.568	0.30437	63.375	63.224	63.529	-0.19243	0.12397	-0.0010267	NaN	24.203	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71822			54669	4983	38161	38223							-0.06366444487889567
NLLFRLMD	8	Unmodified	_NLLFRLMD_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant;ENST00000560519.1_1_15:64026898-64041594:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7970886230469	2	511.278595	1020.54264	-0.19288	-9.8614E-05	-3.8379	-0.0019622	-4.0308	-0.0020608	511.276630071262	61.069	0.35727	60.863	60.734	61.091	-0.20599					19	8	3	0	0	0	0.027866	1	6831	6831		38.806	9.6566	1	176010			54670	2521	38162	38224	59954	59954					0.03318704433763742
NLLFVETK	8	Unmodified	_NLLFVETK_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|4|2|sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|4|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.7325439453125	2	482.279118	962.543683	0.42369	0.00020433	-0.3802	-0.00018336	0.043487	2.0973E-05	482.27873968716165	57.385	0.45209	57.211	56.931	57.383	-0.1749					15	11	2	0	0	0	0.027866	1	6421	6421		17.365	0	1	167220	+		54671	36389	38163	38225	59955	59955					0.06091242074319325
NLLGSKHS	8	Unmodified	_NLLGSKHS_					0	0	0			REV__ENSG00000087903|ENST00000303657|RFX2	REV__ENSG00000087903|ENST00000303657|RFX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2620544433594	2	428.237784	854.461016	0.12875	5.5136E-05	-1.1529	-0.00049371	-1.0241	-0.00043858	428.2374899348887	89.996	0.6498	89.979	89.837	90.487	-0.016716					29	15	3	0	0	0	0.027866	1	11367	11367		37.159	0	1	723440	+		54672	20805	38164	38226	59956	59956					0.027963450661900424
NLLHVDQPL	9	Unmodified	_NLLHVDQPL_					0	0	0			REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	REV__nc|ENSG00000184178|Q8WU76-2|SCFD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7904663085938	2	524.792924	1047.57129	0.070702	3.7104E-05	-0.92922	-0.00048765	-0.85851	-0.00045054	524.7924284079555	61.145	1.1899	61.216	60.871	62.061	0.071129					96	31	5	0	0	0	0.39228	1	7007	7007		66.429	0	1	7743900	+		54673	27642	38165	38227	59957	59957					0.049411453345555856
NLLIFILLL	9	Unmodified	_NLLIFILLL_					0	0	0		nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6;SLC9A6|p.L401Rfs*14|1|0.29|ENSG00000198689|chrX:136016706-136016706|T/-|frameshift_variant	nc|ENSG00000198689|Q92581-3|SLC9A6	nc|ENSG00000198689|Q92581-3|SLC9A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3423461914062	2	536.362453	1070.71035	-0.78091	-0.00041885	2.5915	0.00139	1.8106	0.00097114	536.3637661804172	27.161	0.32991	27.161	26.993	27.323	0					18	8	3	0	0	0	0.024443	1	1445	1445		26.796	0	1	247880			54674	10170	38166	38228	59958	59958					0.17782714970053348
NLLIIAFAL	9	Unmodified	_NLLIIAFAL_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2705078125	2	494.315503	986.616454	0.29481	0.00014573	1.1985	0.00059246	1.4934	0.00073819	494.3162200518221	77.651	0.29758	77.44	77.247	77.545	-0.21087					9	6	2	0	0	0	0.024535	1	9571	9571		25.45	1.2474	1	129830	+		54675	22544	38167	38229	59959	59959					0.12260995867734437
NLLIQMLSL	9	Unmodified	_NLLIQMLSL_					0	0	0			REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7950439453125	2	522.809728	1043.6049	-0.3712	-0.00019406	-3.1216	-0.001632	-3.4927	-0.001826	522.8081838191299	67.992	0.9191	67.992	67.45	68.369	0					52	23	4	0	0	0	0.022756	1	8161	8161		79.451	0	1	733600	+		54676	35108	38168	38230	59960	59960					0.0848443078211858
NLLIQMLSL	9	Unmodified	_NLLIQMLSL_					0	0	0			REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	522.809728	1043.6049	0.22998	0.00012024	-3.1135	-0.0016278	-2.8835	-0.0015075	522.8080194702521	68.128	1.2566	68.147	67.508	68.764	0.018913					46	32	2	0	0	0	0.023417	1	8115	8115		68.787	0	1	693290	+		54677	35108	38168	38230	59961	59961					0.0848443078211858
NLLISNSLLF	10	Unmodified	_NLLISNSLLF_					0	0	0			REV__ENST00000396253.7_1_11:18330607-18332343:-|nuORF	REV__ENST00000396253.7_1_11:18330607-18332343:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3299560546875	2	567.331882	1132.64921	-0.94715	-0.00053735	-2.5339	-0.0014376	-3.481	-0.0019749	567.3302848841014	102.52	0.82284	102.52	102.3	103.12	0					41	19	4	0	0	0	1.0344	1	13130	13130		41.427	2.6205	1	875600	+		54678	31728	38169	38231	59962	59962					0.0881915819995811
NLLKEDLAR	9	Unmodified	_NLLKEDLAR_					0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.7772827148438	2	536.31148	1070.60841	-0.6101	-0.00032721	-1.222	-0.00065535	-1.8321	-0.00098255	536.310657953008	57.373	0.23517	57.373	57.187	57.422	0					16	5	4	0	0	0	0.024418	1	6431	6431		45.972	7.1661	1	460800	+		54679	20455	38170	38232	59963	59963					0.07592816880310238
NLLKEMKKV	9	Oxidation (M)	_NLLKEM(Oxidation (M))KKV_		NLLKEM(1)KKV		NLLKEM(85)KKV	0	0	1		ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8327026367188	2	559.833734	1117.65292	-0.31677	-0.00017734	-2.7882	-0.0015609	-3.1049	-0.0017383	559.831966398586	78.812	1.3387	78.812	78.531	79.87	0					101	31	4	0	0	0	0.23085	1	9816	9816		84.916	8.1414	1	3102100			54680	6964	38171	38233	59964	59964		287			0.09879504702144004
NLLKLIAEV	9	Unmodified	_NLLKLIAEV_					0	0	0		ENST00000479309.6_1_2:169690730-169745796:-|nuORF;ENSG00000152253|ENST00000282074|SPC25	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	506.8244323730469	2	506.823692	1011.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.273	1	81.273	80.773	81.773	0								0	0	0	0.56426	1	10122	10122		44.377	0.26039	1				54681	6261	38172	38234	59965	59965					0.12748077033859317
NLLKLIAEV	9	Unmodified	_NLLKLIAEV_					0	0	0		ENST00000479309.6_1_2:169690730-169745796:-|nuORF;ENSG00000152253|ENST00000282074|SPC25	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	506.8240966796875	2	506.823692	1011.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.443	1	81.312	80.812	81.812	-0.13075								0	0	0	0.42073	1	10111	10111		60.118	1.8883	1				54682	6261	38172	38234	59966	59966					0.12748077033859317
NLLKLIAEV	9	Unmodified	_NLLKLIAEV_					0	0	0		ENST00000479309.6_1_2:169690730-169745796:-|nuORF;ENSG00000152253|ENST00000282074|SPC25	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	506.82342529296875	2	506.823692	1011.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.606	1	81.475	80.975	81.975	-0.13075								0	0	0	0.56426	1	10135	10135		44.377	3.599	1				54683	6261	38172	38234	59967	59967					0.12748077033859317
NLLKLIAEV	9	Unmodified	_NLLKLIAEV_					0	0	0		ENST00000479309.6_1_2:169690730-169745796:-|nuORF;ENSG00000152253|ENST00000282074|SPC25	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	ENST00000479309.6_1_2:169690730-169745796:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8234558105469	2	506.823692	1011.63283	-0.66359	-0.00033632	1.5627	0.00079203	0.89913	0.0004557	506.82390296410944	81.182	2.4836	81.206	80.814	83.297	0.023903					133	59	4	0	0	0	0.2101	3	10034	10034;10044;10063		87.696	32.92	1	1043600			54684	6261	38172	38234	59968;59969;59970	59968					0.12748077033859317
NLLKNYSL	8	Unmodified	_NLLKNYSL_					0	0	0		nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2;ENST00000547616.2_1_14:19475147-19475555:-|nuORF;ENST00000438441.1_22:16365437-16366175:+|nuORF	nc|ENSG00000117650|P51955-2|NEK2	nc|ENSG00000117650|P51955-2|NEK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.77685546875	2	482.776742	963.538931	0.52381	0.00025288	-0.19218	-9.2781E-05	0.33163	0.0001601	482.776321729423	97.206	1.4382	97.215	96.751	98.189	0.0089111					62	32	3	0	0	0	1.0516	1	12359	12359		29.15	1.2673	1	987190			54685	3651	38173	38235	59971	59971					0.05570357931560466
NLLKPKSLY	9	Unmodified	_NLLKPKSLY_					0	0	0		AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant;ENSG00000165923|ENST00000525123|AGBL2;ENST00000529712.5_1_11:47690447-47736202:-|nuORF	AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.325439453125	2	538.329142	1074.64373	0.041042	2.2094E-05	-2.6473	-0.0014251	-2.6062	-0.001403	538.3279103195214	101.27	1.3445	101.15	100.65	102	-0.12576					54	33	2	0	0	0	0.83071	1	12596	12596		37.159	0	1	82652			54686	43	38174	38236	59972	59972					0.10939479408125408
NLLKPLLPS	9	Unmodified	_NLLKPLLPS_					0	0	0		ENST00000253692.11_2_3:17202316-17202439:-|nuORF	ENST00000253692.11_2_3:17202316-17202439:-|nuORF	ENST00000253692.11_2_3:17202316-17202439:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.28167724609375	2	497.81841	993.622267	0.12172	6.0596E-05	0.07513	3.7401E-05	0.19685	9.7997E-05	497.8183963499567	82.248	0.47292	82.067	81.814	82.287	-0.18079					21	10	3	0	0	0	0.023417	1	9876	9876		58.782	0	1	99127			54687	11372	38175	38237	59973	59973					0.12520094379431157
NLLKTAMCC	9	Unmodified	_NLLKTAMCC_					0	0	0		ENST00000275603.8_1_7:56120122-56122089:+|nuORF	ENST00000275603.8_1_7:56120122-56122089:+|nuORF	ENST00000275603.8_1_7:56120122-56122089:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80322265625	2	498.737391	995.460229	-0.12798	-6.3829E-05	0.8868	0.00044228	0.75882	0.00037845	498.7380043449545	53.067	0.18515	53.067	52.901	53.086	0					5	4	2	0	0	0	0.023635	1	5720	5720		39.253	18.771	1	68601			54688	11689	38176	38238	59974	59974					-0.03768276961056927
NLLKVSEV	8	Unmodified	_NLLKVSEV_					0	0	0		VPS45|p.E349K|1|0.35|ENSG00000136631|chr1:150082824-150082824|G/A|missense_variant	VPS45|p.E349K|1|0.35|ENSG00000136631|chr1:150082824-150082824|G/A|missense_variant	VPS45|p.E349K|1|0.35|ENSG00000136631|chr1:150082824-150082824|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.26983642578125	2	451.271293	900.528032	0.51563	0.00023269	-0.51209	-0.00023109	0.0035465	1.6004E-06	451.2708931308257	47.137	0.75073	46.984	46.55	47.3	-0.15301					38	19	3	0	0	0	0.95679	1	4673	4673		44.117	1.7207	1	1562100			54689	38145	38177	38239	59975	59975					0.07378955557283007
NLLLAALTL	9	Unmodified	_NLLLAALTL_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.30340576171875	2	471.305136	940.595718	1.2343	0.00058173	-4.0277	-0.0018983	-2.7934	-0.0013165	471.3030939289187	17.933	0.69178	17.779	17.607	18.299	-0.15403					22	13	4	0	0	0	0.97516	1	239	239		25.45	0	1	194490	+		54690	26309	38178	38240	59976	59976					0.12304405488077919
NLLLCFEL	8	Unmodified	_NLLLCFEL_					0	0	0			REV__nc|ENSG00000107018|P04808-2|RLN1	REV__nc|ENSG00000107018|P04808-2|RLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7628479003906	2	482.762246	963.50994	0.67057	0.00032373	-0.66299	-0.00032007	0.0075865	3.6625E-06	482.7617960043813	85.609	0.71635	85.459	85.03	85.747	-0.14967					41	16	3	0	0	0	0.93274	1	10393	10393		47.916	0	1	521010	+		54691	21651	38179	38241	59977	59977					0.02672497310925337
NLLLCFEL	8	Unmodified	_NLLLCFEL_					0	0	0			REV__nc|ENSG00000107018|P04808-2|RLN1	REV__nc|ENSG00000107018|P04808-2|RLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.761962890625	2	482.762246	963.50994	0.62786	0.00030311	-0.49272	-0.00023787	0.13514	6.5239E-05	482.7618472777772	85.618	0.67457	85.48	85.07	85.745	-0.13753					36	15	3	0	0	0	0.89627	1	10372	10372		51.335	6.8044	1	529110	+		54692	21651	38179	38241	59978	59978					0.02672497310925337
NLLLDQSNVDI	11	Unmodified	_NLLLDQSNVDI_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2122802734375	3	415.22247	1242.64558	-0.60137	-0.0002497	2.0747	0.00086146	1.4733	0.00061176	415.2232864242633	29.652	0.56217	29.652	29.333	29.895	0					18	13	2	0	0	0	0.02477	1	1801	1801		12.433	0	1	60398			54693	1093	38180	38242	59979	59979					0.03396443635438118
NLLLDTYL	8	Unmodified	_NLLLDTYL_					0	0	0			REV__ENSG00000173838|ENST00000311269|MARCHF10	REV__ENSG00000173838|ENST00000311269|MARCHF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.77130126953125	2	482.771126	963.527698	0.5214	0.00025172	2.0103	0.0009705	2.5317	0.0012222	482.7708438563062	95.892	1.1842	95.894	95.567	96.751	0.0020752					69	27	4	0	0	0	0.6536	2	12131	12131;12144		71.296	13.484	1	1313900	+		54694	26813	38181	38243	59980;59981	59980					0.04447535837425676
NLLLEYTN	8	Unmodified	_NLLLEYTN_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2583312988281	2	490.258382	978.502212	-0.31257	-0.00015324	-0.53928	-0.00026439	-0.85186	-0.00041763	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	1.0198	1	13144	13144		34.173	5.9183	1	4889800			54695	838	38182	38244	59982	59982					0.012100613149982564
NLLLLQLSV	9	Unmodified	_NLLLLQLSV_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MSMS	OPSCC_39_ClassI_Rep-1	1	506.82366943359375	2	506.823692	1011.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.388	1	81.388	80.888	81.888	0								0	0	0	0.48579	1	10139	10139		54.776	3.4409	1		+		54696	27660	38183	38245	59983	59983					0.12748077033859317
NLLLNLCEL	9	Carbamidomethyl (C)	_NLLLNLC(Carbamidomethyl (C))EL_	NLLLNLC(1)EL		NLLLNLC(57)EL		0	1	0			REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF	REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	551.3008422851562	2	551.302267	1100.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.426	1	70.154	69.654	70.654	-0.27185								0	0	0	0.47068	1	8194	8194		56.721	11.699	1		+		54697	28711	38184	38246	59984	59984	374				0.04370938914121325
NLLNQTIEL	9	Unmodified	_NLLNQTIEL_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2971801757812	2	529.298039	1056.58152	0.0093012	4.9231E-06	-0.60324	-0.00031929	-0.59393	-0.00031437	529.2974144850223	106.51	0.8959	106.51	106.1	106.99	0.0018387					60	31	4	0	0	0	0.85329	1	13585	13585		35.618	3.6634	1	974930	+		54698	28144	38185	38247	59985	59985					0.0554970826913177
NLLNVERIG	9	Unmodified	_NLLNVERIG_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3169555664062	2	514.298373	1026.58219	-0.8	-0.00041144	-0.25744	-0.0001324	-1.0574	-0.00054384	514.2979410292112	32.598	0.75625	32.598	32.262	33.018	0					29	19	2	0	0	0	0.023635	1	2300	2300		66.429	0	1	234780	+		54699	27671	38186	38248	59986	59986					0.06996547708831713
NLLPEPQV	8	Unmodified	_NLLPEPQV_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.255859375	2	455.255643	908.496732	0.23433	0.00010668	0.56803	0.0002586	0.80236	0.00036528	455.2554655464866	45.552	0.84056	45.552	45.181	46.021	0					77	24	5	0	0	0	0.5947	2	4437	4437;4451		76.774	7.5886	1	5071800			54700	1883	38187	38249	59987;59988	59987					0.038823825231816045
NLLPKKLKP	9	Unmodified	_NLLPKKLKP_					0	0	0		MER34A_dup1023|chr11:33702486-33702773:+|2.4347117130437725|0.0170586342162612|7.16|522.0|9|3|sense	MER34A_dup1023|chr11:33702486-33702773:+|2.4347117130437725|0.0170586342162612|7.16|522.0|9|3|sense	MER34A_dup1023|chr11:33702486-33702773:+|2.4347117130437725|0.0170586342162612|7.16|522.0|9|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2780151367188	2	525.855327	1049.6961	-0.35831	-0.00018842	0.34593	0.00018191	-0.012383	-6.5115E-06	525.8553407656115	88.711	1.3485	88.711	87.922	89.27	0					53	31	2	0	0	0	0.024541	1	11106	11106		11.511	0	1	146150			54701	17970	38188	38250	59989	59989					0.1732406254172929
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1	ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.839111328125	2	523.839677	1045.6648	-1.1143	-0.00058369	0.43483	0.00022778	-0.67943	-0.00035591	523.8398367821065	60.826	1.7866	60.826	60.33	62.117	0					118	47	5	0	0	0	0.11848	4	7003	6994;7003;7015;7028		106.42	29.569	1	9760400			54702	10520;7943	38189	38251	59990;59991;59992;59993	59991					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1	ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.8391723632812	2	523.839677	1045.6648	-0.53011	-0.00027769	-0.2004	-0.00010498	-0.73052	-0.00038267	523.8395320407461	61.144	1.6442	60.93	60.384	62.028	-0.21339					112	43	5	0	0	0	0.11848	4	7037	7013;7024;7037;7051		106.42	25.927	1	13640000			54703	10520;7943	38189	38251	59994;59995;59996;59997	59996					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1	ENSG00000169504|ENST00000374379|CLIC4;ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.8394165039062	2	523.839677	1045.6648	-0.73125	-0.00038306	0.01917	1.0042E-05	-0.71208	-0.00037301	523.8396255251024	60.841	1.7114	60.912	60.384	62.096	0.071125					139	45	5	0	0	0	0.08613	4	6920	6920;6932;6945;6957		115.46	38.612	1	9151900			54704	10520;7943	38189	38251	59998;59999;60000;60001	59998					0.14379489507655308
NLLPNIESP	9	Unmodified	_NLLPNIESP_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8031311035156	2	498.771657	995.528761	-0.47643	-0.00023763	2.5488	0.0012713	2.0723	0.0010336	498.7718863315816	53.059	1.1062	52.912	52.569	53.675	-0.14723					37	29	2	0	0	0	0.024292	1	5666	5666		40.778	0	1	120030			54705	7485	38190	38252	60002	60002					0.03081750206331435
NLLPRMLNS	9	Unmodified	_NLLPRMLNS_					0	0	0			REV__nc|ENSG00000151413|Q8TB37-2|NUBPL	REV__nc|ENSG00000151413|Q8TB37-2|NUBPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8139038085938	2	529.294776	1056.575	-1.1053	-0.00058501	2.6459	0.0014005	1.5407	0.00081546	529.2988486681555	29.402	0.38786	29.157	29.011	29.399	-0.24524					16	8	3	0	0	0	0.024523	1	1781	1781		15.642	0	1	28001	+		54706	24768	38191	38253	60003	60003					0.048974918367548526
NLLPTLITNLV	11	Unmodified	_NLLPTLITNLV_					0	0	0			REV__ENSG00000221931|ENST00000327930|OR6X1	REV__ENSG00000221931|ENST00000327930|OR6X1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8717041015625	2	605.873914	1209.73327	0.020307	1.2303E-05	-3.0121	-0.0018249	-2.9918	-0.0018126	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	1.0557	1	12272	12272		23.523	2.5758	1	1147100	+		54707	28839	38192	38254	60004	60004					0.13679689296827746
NLLQKLTA	8	Unmodified	_NLLQKLTA_					0	0	0		ENST00000310653.10_2_11:73388880-73388949:-|nuORF	ENST00000310653.10_2_11:73388880-73388949:-|nuORF	ENST00000310653.10_2_11:73388880-73388949:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2689514160156	2	450.779285	899.544017	-0.93506	-0.00042151	0.34316	0.00015469	-0.5919	-0.00026682	450.77934702016233	37.771	0.41672	37.688	37.396	37.813	-0.082516					34	11	4	0	0	0	0.027866	1	3111	3111		29.15	0	1	3450300			54708	12066	38193	38255	60005	60005					0.09022661794176656
NLLQLKMH	8	Unmodified	_NLLQLKMH_					0	0	0			REV__ENST00000586314.5_1_18:31432808-31708839:-|nuORF	REV__ENST00000586314.5_1_18:31432808-31708839:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80328369140625	2	498.786587	995.558621	-0.095543	-4.7656E-05	1.1271	0.0005622	1.0316	0.00051454	498.78752501574735	53.03	0.43608	53.03	52.901	53.337	0					16	11	2	0	0	0	0.027866	1	5695	5695		47.916	7.343	1	68950	+		54709	21253	38194	38256	60006	60006					0.06066410670666755
NLLQQAPPN	9	Unmodified	_NLLQQAPPN_					0	0	0		ENSG00000254245|ENST00000253812|PCDHGA3	ENSG00000254245|ENST00000253812|PCDHGA3	ENSG00000254245|ENST00000253812|PCDHGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.78802490234375	2	497.769448	993.524344	0.013686	6.8124E-06	-0.23868	-0.00011881	-0.22499	-0.00011199	497.76900626038156	57.148	0.46431	57.148	56.841	57.305	0					18	12	2	0	0	0	0.024523	1	6377	6377		29.15	0	1	129340			54710	10877	38195	38257	60007	60007					0.02732285783417865
NLLREQKS	8	Unmodified	_NLLREQKS_					0	0	0			REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2705078125	2	494.282723	986.550893	0.16501	8.1562E-05	-3.6147	-0.0017867	-3.4497	-0.0017051	494.2783833317991	77.491	0.50537	77.28	77.08	77.585	-0.21087					28	11	3	0	0	0	0.027866	1	9571	9571		26.693	3.6504	1	725850	+		54711	36839	38196	38258	60008	60008					0.057079746747604077
NLLRLRMS	8	Unmodified	_NLLRLRMS_					0	0	0			REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF	REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.280029296875	2	501.797486	1001.58042	0.36015	0.00018072	-3.3428	-0.0016774	-2.9827	-0.0014967	502.2958475791014	90.894	0.41501	90.905	90.576	90.991	0.011276					13	9	2	0	0	0	0.027866	1	11390	11390		23.042	0	1	85939	+		54712	34126	38197	38259	60009	60009					0.07969215419257125
NLLRQLLP	8	Unmodified	_NLLRQLLP_					0	0	0		nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-3|WAC;ENST00000476046.1_1_10:28884921-28897371:+|nuORF	nc|ENSG00000095787|Q9BTA9-2|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2757568359375	2	483.808377	965.6022	0.52868	0.00025578	-0.60168	-0.0002911	-0.073001	-3.5319E-05	483.8079233844403	64.293	0.80923	64.293	63.99	64.8	0					51	21	3	0	0	0	0.027866	1	7599	7599		92.191	6.8311	1	1370900			54713	2038	38198	38260	60010	60010					0.11802343439467222
NLLRRSSL	8	Unmodified	_NLLRRSSL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.79254150390625	2	479.793258	957.571963	-0.0035891	-1.722E-06	-0.30881	-0.00014817	-0.3124	-0.00014989	479.79304926559524	30.587	0.50228	30.343	30.122	30.624	-0.24415					32	11	4	0	0	0	0.87148	1	1969	1969		53.351	2.016	1	1471500	+		54714	26810	38199	38261	60011	60011					0.0914798477426757
NLLRTDSI	8	Unmodified	_NLLRTDSI_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.263427734375	2	466.263999	930.513445	-0.827	-0.0003856	-0.64828	-0.00030227	-1.4753	-0.00068787	466.2637693830354	37.899	1.8394	37.677	37.348	39.188	-0.22149					143	50	5	0	0	0	0.46709	1	3069	3069		88.643	0.88857	1	72322000	+		54715	21433	38200	38262	60012	60012					0.04540883409140406
NLLSRLRF	8	Unmodified	_NLLSRLRF_					0	0	0		nc|ENSG00000114248|Q6UY01-4|LRRC31;ENSG00000114248|ENST00000316428|LRRC31;nc|ENSG00000114248|Q6UY01-2|LRRC31	nc|ENSG00000114248|Q6UY01-4|LRRC31	nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8135986328125	2	509.811451	1017.60835	-0.080983	-4.1286E-05	2.7723	0.0014134	2.6913	0.0013721	509.8127050425874	104.21	1.0835	104.21	103.91	104.99	0.0031357					71	30	4	0	0	0	0.95679	1	13388	13388		44.117	6.9577	1	1242200			54716	3349	38201	38263	60013	60013					0.10024861670990504
NLLSRLVK	8	Unmodified	_NLLSRLVK_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;RTTN|p.N137Tfs*5|1|0.22|ENSG00000176225|chr18:70201971-70201971|T/-|frameshift_variant;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.80865478515625	2	471.808377	941.6022	1.222	0.00057656	-1.1925	-0.00056262	0.029547	1.3941E-05	471.80772834128663	40.691	1.3073	40.568	40.267	41.574	-0.12318					85	36	4	0	0	0	0.56592	1	3574	3574		79.451	2.6769	1	7885700			54717	8622	38202	38264	60014	60014					0.12906343439476586
NLLSRLVK	8	Unmodified	_NLLSRLVK_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;RTTN|p.N137Tfs*5|1|0.22|ENSG00000176225|chr18:70201971-70201971|T/-|frameshift_variant;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.8087463378906	2	471.808377	941.6022	0.07174	3.3848E-05	-0.15796	-7.4528E-05	-0.086222	-4.068E-05	471.80821029540795	40.758	1.2493	40.781	40.494	41.743	0.023006					82	35	5	0	0	0	0.34573	1	3551	3551		104.75	3.1458	1	8657500			54718	8622	38202	38264	60015	60015					0.12906343439476586
NLLSSLSW	8	Unmodified	_NLLSSLSW_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1;PLA2R1|p.L877Tfs*8|1|0.13|ENSG00000153246|chr2:159970180-159970181|-/C|frameshift_variant	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2690124511719	2	460.247818	918.481082	-0.010419	-4.7953E-06	3.5177	0.001619	3.5073	0.0016142	460.24927912848057	67.587	1.4286	67.353	66.97	68.399	-0.23375					56	34	2	0	0	0	0.027866	1	7795	7795		47.657	17.34	1	244670			54719	6335	38203	38265	60016	60016					0.01858096006139931
NLLTCQVKTN	10	Unmodified	_NLLTCQVKTN_					0	0	0		ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2;ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	ENSG00000151693|ENST00000281419|ASAP2	ENSG00000151693|ENST00000281419|ASAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.8269653320312	2	567.302798	1132.59104	-1.0182	-0.00057763	-2.4719	-0.0014023	-3.4902	-0.00198	567.3012641034571	53.412	0.65393	53.265	52.985	53.639	-0.14723					41	17	4	0	0	0	0.03519	1	5711	5711		37.812	0	1	830840			54720	6222	38204	38266	60017	60017					0.03005153283038453
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENST00000477051.1_1_8:133854703-133858165:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	526.7904663085938	2	526.790381	1051.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.111	1	60.111	59.611	60.611	0								0	0	0	0.042231	1	6898	6898		112.41	13.036	1				54721	4341	38205	38267	60018	60018					0.04248841471940068
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENST00000477051.1_1_8:133854703-133858165:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.7903442382812	2	526.790381	1051.56621	-0.67036	-0.00035314	0.13575	7.1514E-05	-0.53461	-0.00028163	526.7904510281807	60.345	0.56469	60.131	59.782	60.347	-0.21339					41	14	4	0	0	0	0.29609	1	6895	6895		76.17	20.665	1	1818600			54722	4341	38205	38267	60019	60019					0.04248841471940068
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENST00000477051.1_1_8:133854703-133858165:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.7904052734375	2	526.790381	1051.56621	-0.98953	-0.00052128	0.50828	0.00026776	-0.48125	-0.00025352	526.7905784618623	59.974	0.52392	60.053	59.756	60.28	0.078888					33	13	3	0	0	0	0.14181	1	6804	6804		101.25	35.449	1	1915200			54723	4341	38205	38267	60020	60020					0.04248841471940068
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENST00000477051.1_1_8:133854703-133858165:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.7903442382812	2	526.790381	1051.56621	-0.27176	-0.00014316	-0.16115	-8.4893E-05	-0.43291	-0.00022805	526.7901053086102	60.331	0.94458	60.133	59.874	60.819	-0.19742					55	23	4	0	0	0	0.094442	1	6717	6717		112.41	38.436	1	1740700			54724	4341	38205	38267	60021	60021					0.04248841471940068
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENST00000477051.1_1_8:133854703-133858165:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.790381	1051.56621	-0.35787	-0.00018852	0.1059	5.5788E-05	-0.25197	-0.00013273	526.7902704561378	60.115	0.57591	59.939	59.704	60.28	-0.1761	-0.13999	-1.1698E-05	NaN	112.41	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1394000			54725	4341	38205	38267							0.04248841471940068
NLLTHIENV	9	Unmodified	_NLLTHIENV_					0	0	0		ENST00000477051.1_1_8:133854703-133858165:+|nuORF;ENSG00000129292|ENST00000395386|PHF20L1	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	ENST00000477051.1_1_8:133854703-133858165:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.790381	1051.56621	-0.38775	-0.00020427	-0.12209	-6.4318E-05	-0.50985	-0.00026858	526.7902128680456	60.394	0.51077	60.14	59.868	60.378	-0.25373	0.060442	-0.00025191	NaN	112.41	33	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1523500			54726	4341	38205	38267							0.04248841471940068
NLLTIVGAL	9	Unmodified	_NLLTIVGAL_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.29071044921875	2	457.289485	912.564418	0.44168	0.00020197	-1.111	-0.00050803	-0.66929	-0.00030606	457.2890456844276	93.866	3.011	93.866	93.303	96.314	0					211	71	5	0	0	0	0.049585	1	12082	12082		128.86	3.0471	1	43644000			54727	3255	38206	38268	60022	60022					0.10463832454001931
NLLTLFDPI	9	Unmodified	_NLLTLFDPI_					0	0	0			REV__ENSG00000125962|ENST00000473968|ARMCX5	REV__ENSG00000125962|ENST00000473968|ARMCX5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2998046875	2	523.30005	1044.58555	-0.60792	-0.00031812	0.17486	9.1503E-05	-0.43306	-0.00022662	523.3001095672797	76.735	1.6071	76.506	76.121	77.728	-0.22843					85	38	5	0	0	0	0.23085	1	9436	9436		84.916	2.675	1	7828000	+		54728	22864	38207	38269	60023	60023					0.06503797762843533
NLLYVADSY	9	Unmodified	_NLLYVADSY_					0	0	0		ENSG00000196865|ENST00000369301|NHLRC2;nc|ENSG00000196865|Q8NBF2-2|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2843627929688	2	529.263665	1056.51278	0.022409	1.186E-05	-1.8234	-0.00096507	-1.801	-0.00095321	529.2633577232258	87.389	0.16778	87.251	87.122	87.289	-0.13734					5	3	2	0	0	0	0.024412	1	10610	10610		31.955	3.7006	1	19134			54729	9929	38208	38270	60024	60024					-0.013219560305742561
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.2969970703125	2	536.296985	1070.57942	-0.77934	-0.00041796	0.18422	9.8798E-05	-0.59512	-0.00031916	536.2969531105548	57.188	0.89553	57.021	56.751	57.646	-0.1672					55	23	3	0	0	0	0.01896	4	6233	6221;6233;6245;6259		150.36	59.992	1	7638200			54730	8411	38209	38271	60025;60026;60027;60028	60026					0.04694956259686478
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.2971801757812	2	536.296985	1070.57942	-0.13536	-7.2594E-05	-0.43002	-0.00023062	-0.56538	-0.00030321	536.2966109829202	57.213	0.95252	57.01	56.71	57.662	-0.20209					75	25	5	0	0	0	0.016249	3	6245	6233;6245;6257		155.58	45.465	1	7263400			54731	8411	38209	38271	60029;60030;60031	60030					0.04694956259686478
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.2969360351562	2	536.296985	1070.57942	-0.8824	-0.00047323	0.37783	0.00020263	-0.50456	-0.0002706	536.2970464212561	57.313	0.89659	57.088	56.814	57.711	-0.2248					66	23	4	0	0	0	0.016249	3	6252	6226;6240;6252		155.58	45.615	1	6931400			54732	8411	38209	38271	60032;60033;60034	60034					0.04694956259686478
NLMEQPIKV	9	Oxidation (M)	_NLM(Oxidation (M))EQPIKV_		NLM(1)EQPIKV		NLM(88)EQPIKV	0	0	1		ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.294677734375	2	544.294442	1086.57433	-0.44371	-0.00024151	-0.17386	-9.463E-05	-0.61756	-0.00033614	544.2942110107108	47.798	0.88535	47.522	47.081	47.966	-0.27598					51	23	3	0	0	0	0.2101	1	4693	4693		87.696	20.203	1	2431900			54733	8411	38209	38272	60035	60035		348			0.03450652397077647
NLMPVTGVK	9	Unmodified	_NLMPVTGVK_					0	0	0		ENST00000478296.5_1_3:75787041-75787971:-|nuORF	ENST00000478296.5_1_3:75787041-75787971:-|nuORF	ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2904052734375	2	479.773145	957.531738	0.37047	0.00017774	-3.8141	-0.0018299	-3.4436	-0.0016522	479.771219042031	68.379	0.58544	68.086	67.857	68.442	-0.29267					36	14	4	0	0	0	0.024319	1	8131	8131		56.721	3.3696	1	426910			54734	15140	38210	38273	60036	60036					0.051273020594976515
NLMQHMKL	8	Unmodified	_NLMQHMKL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7709655761719	2	507.764797	1013.51504	-1.1912	-0.00060483	0.14181	7.2006E-05	-1.0494	-0.00053282	507.7647220454775	22.122	0.72663	22.196	21.832	22.559	0.073954					24	14	2	0	0	0	0.027866	1	662	662		35.201	15.841	1	384890			54735	349	38211	38274	60037	60037					0.008824779018937079
NLMRVQLP	8	Unmodified	_NLMRVQLP_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-2|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-2|NAALADL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.3087158203125	2	485.778762	969.542971	-0.52587	-0.00025546	-1.8379	-0.00089279	-2.3637	-0.0011483	485.7751682887564	20.525	0.44255	20.421	20.079	20.522	-0.10477					24	8	5	0	0	0	0.027866	1	538	538		24.203	0	1	49425	+		54736	26223	38212	38275	60038	60038					0.056981241536277594
NLMWLALL	8	Unmodified	_NLMWLALL_					0	0	0			REV__ENST00000425412.1_1_1:231662957-231663005:-|nuORF	REV__ENST00000425412.1_1_1:231662957-231663005:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79815673828125	2	487.280606	972.546659	-0.087143	-4.2463E-05	2.4686	0.0012029	2.3815	0.0011604	487.2815479888493	75.63	0.83997	75.64	75.363	76.203	0.010368					45	22	3	0	0	0	0.027866	1	9200	9200		54.765	12.369	1	504320	+		54737	32251	38213	38276	60039	60039					0.05928793927478182
NLNELHQLL	9	Unmodified	_NLNELHQLL_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-5|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3321533203125	2	547.303655	1092.59276	0.63391	0.00034694	-4.4682	-0.0024455	-3.8343	-0.0020985	547.301384258677	96.16	0.41403	96.036	95.813	96.227	-0.12305					13	9	2	0	0	0	0.024447	1	11863	11863		32.812	0	1	138650			54738	3903	38214	38277	60040	60040					0.0501653036328662
NLNFRMVAE	9	Unmodified	_NLNFRMVAE_					0	0	0		nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;ENST00000543928.5_1_2:231090559-231103146:+|nuORF;nc|ENSG00000079263|Q13342-4|SP140;nc|ENSG00000079263|Q13342-2|SP140;ENST00000473711.1_1_2:231090559-231102095:+|nuORF	nc|ENSG00000079263|Q13342-3|SP140	nc|ENSG00000079263|Q13342-3|SP140	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.2786865234375	2	547.276583	1092.53861	-1.4898	-0.00081531	1.1367	0.00062208	-0.35307	-0.00019323	547.2771932535435	30.72	3.7101	30.72	29.611	33.321	0					193	92	4	0	0	0	0.62163	1	2054	2054		51.335	3.6781	1	3598800			54739	1656	38215	38278	60041	60041					-0.003953850599373254
NLNKLRQP	8	Unmodified	_NLNKLRQP_					0	0	0			REV__ENSG00000149212|ENST00000536441|SESN3	REV__ENSG00000149212|ENST00000536441|SESN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.27935791015625	2	491.793258	981.571963	0.2869	0.0001411	-0.97952	-0.00048172	-0.69262	-0.00034062	491.7926267510963	41.021	0.52976	41.021	40.728	41.258	0					22	14	2	0	0	0	0.027866	1	3652	3652		23.042	0	1	227520	+		54740	24660	38216	38279	60042	60042					0.08043984774280943
NLNKLRQP	8	Unmodified	_NLNKLRQP_					0	0	0			REV__ENSG00000149212|ENST00000536441|SESN3	REV__ENSG00000149212|ENST00000536441|SESN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.78326416015625	2	491.793258	981.571963	-0.59809	-0.00029414	-3.6523	-0.0017962	-4.2504	-0.0020903	491.7912594981072	78.5	0.68867	78.245	77.955	78.644	-0.25471					32	15	3	0	0	0	0.027866	1	9327	9327		31.955	0	1	387110	+		54741	24660	38216	38279	60043	60043					0.08043984774280943
NLNKNVPIF	9	Unmodified	_NLNKNVPIF_					0	0	0		ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-3|LONRF3;ENSG00000175556|ENST00000371628|LONRF3;nc|ENSG00000175556|Q496Y0-2|LONRF3	ENST00000472173.5_1_X:118112321-118146861:+|nuORF;ENSG00000175556|ENST00000371628|LONRF3	ENSG00000175556|ENST00000371628|LONRF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.81689453125	2	529.803291	1057.59203	-0.013448	-7.1246E-06	0.13049	6.9136E-05	0.11705	6.2011E-05	529.8033567772984	68.556	1.0923	68.313	68.072	69.164	-0.24278					38	26	2	0	0	0	0.023355	1	7906	7906		55.504	13.108	1	2614200			54742	14985;8572	38217	38280	60044	60044					0.06553735714237519
NLNKVVTR	8	Unmodified	_NLNKVVTR_					0	0	0			REV__ENST00000267068.5_2_13:33110518-33110629:-|nuORF	REV__ENST00000267068.5_2_13:33110518-33110629:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28802490234375	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.99042	1	11809	11809		38.806	3.6054	1	42478000	+		54743	29766	38218	38281	60045	60045					0.0874858239999412
NLNLAKYTK	9	Unmodified	_NLNLAKYTK_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.8085327148438	2	532.808574	1063.60259	-0.32957	-0.0001756	1.807	0.00096276	1.4774	0.00078716	532.809199622919	70.929	1.1836	70.94	70.507	71.691	0.010735					105	29	5	0	0	0	0.56934	1	8488	8488		54.776	0	1	3335500			54744	3491	38219	38282	60046	60046					0.07333718368636255
NLNLKQNLL	9	Unmodified	_NLNLKQNLL_					0	0	0			REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3056640625	2	535.321848	1068.62914	-0.72949	-0.00039051	0.35553	0.00019032	-0.37396	-0.00020019	535.321852245948	48.058	0.44489	47.961	47.705	48.15	-0.097553					19	11	2	0	0	0	0.024381	1	4720	4720		45.952	8.1404	1	545400	+		54745	32848	38220	38283	60047	60047					0.09757407259985484
NLNLKQNLL	9	Unmodified	_NLNLKQNLL_					0	0	0			REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.305419921875	2	535.321848	1068.62914	-0.34203	-0.0001831	-0.68774	-0.00036816	-1.0298	-0.00055126	535.3215363906966	48.182	0.44378	47.995	47.749	48.193	-0.18684					23	11	3	0	0	0	0.024436	1	4725	4725		38.806	15.764	1	483900	+		54746	32848	38220	38283	60048	60048					0.09757407259985484
NLNLLEKHS	9	Unmodified	_NLNLLEKHS_					0	0	0			REV__ENSG00000170381|ENST00000643230|SEMA3E	REV__ENSG00000170381|ENST00000643230|SEMA3E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3193969726562	2	534.29583	1066.57711	-1.0277	-0.00054911	0.31333	0.00016741	-0.71439	-0.0003817	534.2957911404421	33.46	0.83727	33.46	33.018	33.855	0					50	22	3	0	0	0	0.024405	1	2459	2459		35.618	0	1	459070	+		54747	26463	38221	38284	60049	60049					0.04648243846236255
NLNMMMEKM	9	Unmodified	_NLNMMMEKM_					0	0	0			REV__ENST00000341681.9_2_2:39517464-39519941:-|nuORF	REV__ENST00000341681.9_2_2:39517464-39519941:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.731689453125	2	571.247266	1140.47998	-0.041738	-2.3843E-05	3.4846	0.0019906	3.4429	0.0019667	571.249314815675	72.841	0.34499	72.564	72.368	72.713	-0.2769					10	7	2	0	0	0	0.024511	1	8538	8538		25.574	4.7369	1	43796	+		54748	30638	38222	38285	60050	60050					-0.08464269012574732
NLNPQDSH	8	Unmodified	_NLNPQDSH_					0	0	0			REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7718200683594	2	462.712131	923.409708	-0.42156	-0.00019506	1.3869	0.00064174	0.96535	0.00044668	462.7128248093235	23.311	0.28064	23.311	23.079	23.36	0					12	6	3	0	0	0	0.027866	1	888	888		32.812	0	1	31331	+		54749	30906	38223	38286	60051	60051					-0.05506023698524132
NLNQHKNM	8	Unmodified	_NLNQHKNM_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80059814453125	2	499.74545	997.476348	0.0028933	1.4459E-06	-1.4565	-0.00072786	-1.4536	-0.00072642	499.74464671365934	28.476	0.49527	28.557	28.289	28.784	0.080811					24	11	3	0	0	0	0.027866	1	1595	1595		33.516	0	1	376140	+		54750	23801	38224	38287	60052	60052					-0.022491114082640706
NLNRETNII	9	Unmodified	_NLNRETNII_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8132934570312	2	543.798737	1085.58292	-0.090373	-4.9145E-05	-0.67169	-0.00036527	-0.76207	-0.00041441	543.7989970797751	93.372	0.26266	93.25	93.103	93.366	-0.12215					7	5	2	0	0	0	0.023635	1	11505	11505		87.754	18.967	1	29002			54751	10554	38225	38288	60053	60053					0.043553423578941874
NLNRETNII	9	Unmodified	_NLNRETNII_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.798737	1085.58292	-0.60167	-0.00032719	-8.1468	-0.0044302	-8.7485	-0.0047574	543.7943285245799	93.149	0.1741	93.004	92.871	93.045	-0.14411	-0.15432	-0.0053016	NaN	76.774	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21749			54752	10554	38225	38288							0.043553423578941874
NLNSIVPSV	9	Unmodified	_NLNSIVPSV_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7666015625	2	471.766374	941.518196	1.1715	0.00055267	-1.1007	-0.00051927	0.070794	3.3398E-05	471.76568199308963	71.119	1.2565	71.119	70.613	71.869	0					56	31	3	0	0	0	0.17822	2	8610	8610;8621		93.195	10.906	1	3336000			54753	5013	38226	38289	60054;60055	60054					0.04509767551905952
NLNSIVPSV	9	Unmodified	_NLNSIVPSV_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.76641845703125	2	471.766374	941.518196	1.1082	0.00052282	-1.1105	-0.00052388	-0.0022437	-1.0585E-06	471.7656926209525	71.51	1.2354	71.222	70.677	71.912	-0.28858					61	31	3	0	0	0	0.096521	2	8615	8615;8637		111.65	26.289	1	2722400			54754	5013	38226	38289	60056;60057	60056					0.04509767551905952
NLNSIVPSV	9	Unmodified	_NLNSIVPSV_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7669372558594	2	471.766374	941.518196	0.53244	0.00025119	-0.39954	-0.00018849	0.1329	6.2696E-05	471.76601057637265	71.212	1.3785	71.223	70.68	72.059	0.010735					64	35	3	0	0	0	0.016871	2	8542	8542;8553		152.47	40.822	1	2997200			54755	5013	38226	38289	60058;60059	60058					0.04509767551905952
NLPFIILLL	9	Unmodified	_NLPFIILLL_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7708129882812	2	528.346803	1054.67905	-0.70197	-0.00037088	-2.582	-0.0013642	-3.284	-0.0017351	528.3452767176071	47.872	0.71695	47.719	47.51	48.227	-0.15301					39	21	3	0	0	0	0.024497	1	4869	4869		20.482	0	1	1089500	+		54756	29202	38227	38290	60060	60060					0.15390141935949941
NLPFIILLL	9	Unmodified	_NLPFIILLL_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2825317382812	2	528.346803	1054.67905	-0.052247	-2.7605E-05	-3.7036	-0.0019568	-3.7558	-0.0019844	528.3448107966021	62.02	0.71345	61.763	61.383	62.097	-0.25725					22	17	2	0	0	0	0.024466	1	6987	6987		18.324	0	1	284750	+		54757	29202	38227	38290	60061	60061					0.15390141935949941
NLPFIILLL	9	Unmodified	_NLPFIILLL_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.346803	1054.67905	-1.0335	-0.00054603	-2.7372	-0.0014462	-3.7707	-0.0019922	528.3452423445679	61.763	0.41369	61.763	61.492	61.906	0	0.025148	0.00067192	NaN	40.573	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59963	+		54758	29202	38227	38290							0.15390141935949941
NLPFIILLL	9	Unmodified	_NLPFIILLL_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.346803	1054.67905	-0.19439	-0.00010271	-3.7056	-0.0019579	-3.9	-0.0020606	528.3447623650388	61.973	0.42326	61.746	61.415	61.839	-0.22663	0.0081657	-0.00035141	NaN	40.573	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136010	+		54759	29202	38227	38290							0.15390141935949941
NLPFIILLL	9	Unmodified	_NLPFIILLL_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.346803	1054.67905	-0.20467	-0.00010814	-3.7474	-0.0019799	-3.9521	-0.0020881	528.344340984053	61.595	0.44626	61.666	61.474	61.92	0.071129	-0.07199	-0.00039553	NaN	40.573	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86185	+		54760	29202	38227	38290							0.15390141935949941
NLPGEGVAW	9	Unmodified	_NLPGEGVAW_					0	0	0			REV__ENSG00000185800|ENST00000270223|DMWD	REV__ENSG00000185800|ENST00000270223|DMWD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7845458984375	2	471.737617	941.460681	-1.099	-0.00051842	-1.3538	-0.00063866	-2.4528	-0.0011571	471.73638461872525	25.845	0.59484	25.679	25.411	26.006	-0.16586					21	15	2	0	0	0	0.024405	1	1237	1237		27.882	4.8398	1	210770	+		54761	27798	38228	38291	60062	60062					-0.012390746536652841
NLPGWNGL	8	Unmodified	_NLPGWNGL_					0	0	0			REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.743408203125	2	435.727052	869.439552	-0.45353	-0.00019761	1.7106	0.00074535	1.2571	0.00054774	435.7276888515127	33.375	0.57143	33.381	33.154	33.726	0.0066261					27	15	2	0	0	0	0.027866	1	2379	2379		33.516	1.5607	1	293790	+		54762	34868	38229	38292	60063	60063					-0.0003903996253029618
NLPHGIESI	9	Unmodified	_NLPHGIESI_					0	0	0			REV__CON__Q2KIH2	REV__CON__Q2KIH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7842102050781	2	490.263999	978.513445	0.30424	0.00014916	-0.66678	-0.0003269	-0.36254	-0.00017774	490.26358003795957	55.815	0.6319	55.815	55.61	56.241	0					29	17	2	0	0	0	0.024323	1	6245	6245		44.117	0	1	285840	+	+	54763	19575	38230	38293	60064	60064					0.023328834091330464
NLPHGIESI	9	Unmodified	_NLPHGIESI_					0	0	0			REV__CON__Q2KIH2	REV__CON__Q2KIH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.7842102050781	2	490.263999	978.513445	-0.1841	-9.0258E-05	-0.37627	-0.00018447	-0.56037	-0.00027473	490.263729891746	55.951	0.80522	55.795	55.442	56.247	-0.15601					30	21	2	0	0	0	0.024381	1	6220	6220		37.159	0	1	284900	+	+	54764	19575	38230	38293	60065	60065					0.023328834091330464
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.8323364257812	2	534.831852	1067.64915	0.19342	0.00010345	-0.50392	-0.00026951	-0.3105	-0.00016607	534.8315057966547	79.199	0.87989	78.95	78.606	79.485	-0.24951					43	20	3	0	0	0	0.20967	2	9449	9449;9461		87.754	21.951	1	932730			54765	3475	38231	38294	60066;60067	60066					0.11803202990608952
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.8318481445312	2	534.831852	1067.64915	-0.1734	-9.2739E-05	0.025492	1.3634E-05	-0.14791	-7.9106E-05	534.831789663084	79.141	0.96004	78.918	78.572	79.532	-0.22293					56	22	4	0	0	0	0.27161	2	9468	9468;9481		79.451	13.648	1	957970			54766	3475	38231	38294	60068;60069	60068					0.11803202990608952
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.8318481445312	2	534.831852	1067.64915	-0.29605	-0.00015834	0.069917	3.7394E-05	-0.22613	-0.00012094	534.8317761174553	79.048	0.83918	78.897	78.606	79.446	-0.15051					46	19	4	0	0	0	0.35646	1	9441	9441		68.787	13.283	1	843410			54767	3475	38231	38294	60070	60070					0.11803202990608952
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.831852	1067.64915	-0.72771	-0.0003892	-0.27176	-0.00014535	-0.99947	-0.00053455	534.8320618935762	79.186	0.62308	79.186	78.993	79.616	0	0.16194	-0.00014768	NaN	87.754	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104270			54768	3475	38231	38294							0.11803202990608952
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.831852	1067.64915	-1.0954	-0.00058585	1.849	0.00098892	0.75364	0.00040307	534.8324127185319	79.343	0.49687	79.17	78.819	79.316	-0.17226	0.14603	0.0021209	NaN	87.754	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80400			54769	3475	38231	38294							0.11803202990608952
NLPKCAAH	8	Unmodified	_NLPKCAAH_					0	0	0		nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2537536621094	2	427.22108	852.427607	-0.6143	-0.00026244	-0.13727	-5.8644E-05	-0.75157	-0.00032109	427.2217544968912	23.026	0.61765	23.026	22.665	23.283	0					30	13	3	0	0	0	0.027866	1	893	893		33.516	3.674	1	104730			54770	10215	38232	38295	60071	60071					-0.0045097997737002515
NLPKCAAH	8	Unmodified	_NLPKCAAH_					0	0	0		nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	427.22108	852.427607	0.58444	0.00024969	-0.050831	-2.1716E-05	0.53361	0.00022797	427.22092269207695	23.202	0.62407	23.001	22.733	23.358	-0.20193	-0.025497	0.00022835	NaN	33.516	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99201			54771	10215	38232	38295							-0.0045097997737002515
NLPLARAL	8	Unmodified	_NLPLARAL_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.2741394042969	2	434.27417	866.533787	-0.24981	-0.00010849	0.28183	0.00012239	0.032024	1.3907E-05	434.27424686284786	54.734	1.8656	54.588	53.858	55.723	-0.14609					94	52	4	0	0	0	0.75307	1	5830	5830		62.978	0	1	11941000	+		54772	34459	38233	38296	60072	60072					0.09518098859598467
NLPLARAL	8	Unmodified	_NLPLARAL_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.2736511230469	2	434.27417	866.533787	1.2122	0.00052642	-1.3311	-0.00057805	-0.11889	-5.1633E-05	434.2735899978598	54.796	1.4449	54.59	54.237	55.682	-0.20613					73	39	4	0	0	0	0.75307	1	5829	5829		62.978	0	1	9428800	+		54773	34459	38233	38296	60073	60073					0.09518098859598467
NLPLEKNRPDS	11	Unmodified	_NLPLEKNRPDS_					0	0	0		ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8427124023438	2	641.841133	1281.66771	-1.7534	-0.0011254	0.89682	0.00057561	-0.85656	-0.00054978	641.8418572607031	110.18	0.37907	110.06	109.87	110.25	-0.12524					38	15	4	0	0	0	0.98542	1	13537	13537		40.058	8.5284	1	180670			54774	6614	38234	38297	60074	60074					0.03814668103859731
NLPLLELA	8	Unmodified	_NLPLLELA_					0	0	0			REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	REV__sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.76800537109375	2	441.768386	881.522219	0.61928	0.00027358	-1.6395	-0.00072428	-1.0202	-0.00045071	441.767731371388	103.03	1.3899	102.86	102.5	103.89	-0.17034					84	33	5	0	0	0	0.93274	1	12778	12778		47.916	7.343	1	21018000	+		54775	37547	38235	38298	60075	60075					0.07671857045613706
NLPLRSGR	8	Unmodified	_NLPLRSGR_					0	0	0		NPVF|p.M116V|1|0.3|ENSG00000105954|chr7:25226819-25226819|T/C|missense_variant;nc|ENSG00000105954|Q9HCQ7-2|NPVF;ENSG00000105954|ENST00000222674|NPVF	NPVF|p.M116V|1|0.3|ENSG00000105954|chr7:25226819-25226819|T/C|missense_variant	NPVF|p.M116V|1|0.3|ENSG00000105954|chr7:25226819-25226819|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2354431152344	2	456.772326	911.530098	0.24451	0.00011168	-0.87593	-0.0004001	-0.63142	-0.00028842	456.77198782596054	22.42	0.18836	22.218	22.097	22.285	-0.20199					5	3	2	0	0	0	0.027866	1	755	755		24.203	10.427	1	71284			54776	2738	38236	38299	60076	60076					0.07079429085752054
NLPLRSGR	8	Unmodified	_NLPLRSGR_					0	0	0		NPVF|p.M116V|1|0.3|ENSG00000105954|chr7:25226819-25226819|T/C|missense_variant;nc|ENSG00000105954|Q9HCQ7-2|NPVF;ENSG00000105954|ENST00000222674|NPVF	NPVF|p.M116V|1|0.3|ENSG00000105954|chr7:25226819-25226819|T/C|missense_variant	NPVF|p.M116V|1|0.3|ENSG00000105954|chr7:25226819-25226819|T/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.772326	911.530098	0.48071	0.00021957	-0.93964	-0.0004292	-0.45894	-0.00020963	456.77201003805584	22.314	0.23227	22.125	21.959	22.191	-0.18894	-0.24668	-0.00053646	NaN	24.203	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84277			54777	2738	38236	38299							0.07079429085752054
NLPNLEEI	8	Unmodified	_NLPNLEEI_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF;CFAP54|p.P2235T|1|0.31|ENSG00000188596|chr12:96708782-96708782|C/A|missense_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2906494140625	2	471.250557	940.486562	-0.75463	-0.00035562	4.1799	0.0019698	3.4253	0.0016142	471.25243070716016	28.416	0.5205	28.171	27.801	28.322	-0.24524					16	12	2	0	0	0	0.027866	1	1612	1612		30.504	5.0535	1	78402			54778	9730	38237	38300	60077	60077					0.013937747979525739
NLPNLEEI	8	Unmodified	_NLPNLEEI_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF;CFAP54|p.P2235T|1|0.31|ENSG00000188596|chr12:96708782-96708782|C/A|missense_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2906494140625	2	471.250557	940.486562	-0.016099	-7.5867E-06	2.6636	0.0012552	2.6475	0.0012476	471.251098890163	27.681	1.7934	27.439	26.372	28.165	-0.24217					106	42	5	0	0	0	0.027866	1	1612	1612		30.504	5.0535	1	599840			54779	9730	38237	38300	60078	60078					0.013937747979525739
NLPNLEEI	8	Unmodified	_NLPNLEEI_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF;CFAP54|p.P2235T|1|0.31|ENSG00000188596|chr12:96708782-96708782|C/A|missense_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.250557	940.486562	-0.54085	-0.00025487	5.0071	0.0023596	4.4663	0.0021047	471.2527550360274	28.216	0.44792	28.047	27.847	28.294	-0.16897	-0.061703	0.00022507	NaN	30.504	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96085			54780	9730	38237	38300							0.013937747979525739
NLPNQVAPL	9	Unmodified	_NLPNQVAPL_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7709655761719	2	483.274367	964.53418	-0.17621	-8.516E-05	0.69537	0.00033606	0.51916	0.0002509	483.2750272870717	82.816	0.34296	82.816	82.535	82.878	0					15	7	3	0	0	0	0.024541	1	10349	10349		11.511	0	1	362690			54781	194	38238	38301	60079	60079					0.05049473788801606
NLPPAWRRRW	10	Unmodified	_NLPPAWRRRW_					0	0	0			REV__ENST00000475022.1_1_19:7970793-7971186:+|nuORF	REV__ENST00000475022.1_1_19:7970793-7971186:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2635498046875	3	451.254662	1350.74216	-0.89869	-0.00040554	-1.6958	-0.00076522	-2.5944	-0.0011708	451.2536808534684	61.091	0.32227	60.915	60.674	60.997	-0.1761					10	7	2	0	0	0	0.03519	1	6839	6839		21.686	11.099	1	71783	+		54782	33282	38239	38302	60080	60080					0.0808152049655746
NLPPELAAAF	10	Unmodified	_NLPPELAAAF_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.812744140625	2	521.782025	1041.5495	-0.15797	-8.2426E-05	-2.991	-0.0015606	-3.1489	-0.0016431	521.779669637574	41.488	0.20556	41.365	41.224	41.43	-0.12317					7	5	2	0	0	0	0.03519	1	3727	3727		23.042	0	1	43386	+		54783	24322	38240	38303	60081	60081					0.030383405859765844
NLPQKTLDL	9	Unmodified	_NLPQKTLDL_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.3016967773438	2	521.300581	1040.58661	-1.5643	-0.00081549	1.397	0.00072824	-0.16737	-8.7252E-05	521.3011782946406	60.612	0.96732	60.691	60.28	61.247	0.078884					67	25	4	0	0	0	0.34489	1	6924	6924		69.628	6.0938	1	6281700			54784	6028	38241	38304	60082	60082					0.06794012131763338
NLPRSILPK	9	Unmodified	_NLPRSILPK_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL;ENST00000461134.1_1_20:43115184-43118179:+|nuORF	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7793579101562	2	519.326934	1036.63931	-0.35074	-0.00018215	0.079949	4.1519E-05	-0.27079	-0.00014063	519.3267622473793	51.754	0.58258	51.754	51.466	52.049	0					37	16	3	0	0	0	0.02435	1	5481	5481		34.173	5.023	1	3678900			54785	4010	38242	38305	60083	60083					0.12246014985225884
NLPTNVAPLIV	11	Unmodified	_NLPTNVAPLIV_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.84375	2	575.845156	1149.67576	-0.26488	-0.00015253	-3.539	-0.0020379	-3.8039	-0.0021904	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0075	1	11383	11383		35.152	7.0705	1	4946400			54786	2991	38243	38306	60084	60084					0.10690847091291289
NLPTNVAPLIV	11	Unmodified	_NLPTNVAPLIV_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.843017578125	2	575.845156	1149.67576	-0.51071	-0.00029409	-3.3307	-0.0019179	-3.8414	-0.002212	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.90725	1	10992	10992		51.193	11.94	1	2085600			54787	2991	38243	38306	60085	60085					0.10690847091291289
NLPTNVAPLIV	11	Unmodified	_NLPTNVAPLIV_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8430786132812	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0392	1	11087	11087		28.081	0	1	6382400			54788	2991	38243	38306	60086	60086					0.10690847091291289
NLPTQNSGLA	10	Unmodified	_NLPTQNSGLA_					0	0	0			REV__ENST00000512677.1_1_3:130400389-130405090:-|nuORF	REV__ENST00000512677.1_1_3:130400389-130405090:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7642822265625	2	507.764363	1013.51417	-0.62008	-0.00031486	-0.0938	-4.7628E-05	-0.71388	-0.00036248	507.76434235861836	22.221	1.2893	22.221	21.916	23.206	0					48	27	2	0	0	0	0.80817	1	779	779		60.118	3.3972	1	6504000	+		54789	34140	38244	38307	60087	60087					0.007956780581935163
NLPTRTPL	8	Unmodified	_NLPTRTPL_					0	0	0			REV__OPA3-EML2|1|fusion	REV__OPA3-EML2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2692565917969	2	456.269084	910.523616	-0.016669	-7.6056E-06	-0.65379	-0.0002983	-0.67046	-0.00030591	456.2688010774782	45.082	1.6533	45.082	44.725	46.378	0					122	47	5	0	0	0	0.30538	1	4390	4390		110.34	2.2497	1	24759000	+		54790	37303	38245	38308	60088	60088					0.06477491134376123
NLQEEILDV	9	Unmodified	_NLQEEILDV_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.305419921875	2	536.779679	1071.5448	-0.66079	-0.0003547	2.9203	0.0015675	2.2595	0.0012128	536.7811211173535	49.363	0.8381	49.21	48.756	49.594	-0.15277					45	22	3	0	0	0	0.024447	1	5007	5007		32.812	8.2932	1	1090100	+		54791	25739	38246	38309	60089	60089					0.011894116525809295
NLQEQRLD	8	Unmodified	_NLQEQRLD_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.818603515625	2	508.261988	1014.50942	0.7603	0.00038643	2.8442	0.0014456	3.6045	0.001832	508.2631806239622	22.851	0.51007	22.653	22.426	22.936	-0.19748					18	10	3	0	0	0	0.027866	1	844	844		52.937	15.778	1	52953	+		54792	23835	38247	38310	60090	60090					0.002747939154346568
NLQIIQDEL	9	Unmodified	_NLQIIQDEL_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7750854492188	2	543.295496	1084.57644	-0.45601	-0.00024775	-0.5223	-0.00028376	-0.97831	-0.00053151	543.2952332637471	73.175	0.86153	72.904	72.637	73.499	-0.27126					42	21	2	0	0	0	0.024418	1	8852	8852		37.812	0	1	2596300			54793	6450	38248	38311	60091	60091					0.03753404406529626
NLQKIIKLN	9	Unmodified	_NLQKIIKLN_					0	0	0		ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A;nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A	ENSG00000170160|ENST00000399273|CCDC144A	ENSG00000170160|ENST00000399273|CCDC144A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7747802734375	2	542.347866	1082.68118	-0.22102	-0.00011987	-0.25197	-0.00013665	-0.47299	-0.00025652	542.3476352456148	72.544	0.73666	72.554	72.331	73.068	0.0097656					27	17	2	0	0	0	0.02435	1	8762	8762		42.396	6.7778	1	190580			54794	8011	38249	38312	60092	60092					0.14314570673764138
NLQKKHAL	8	Unmodified	_NLQKKHAL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2903747558594	2	476.290351	950.566149	0.88111	0.00041966	-0.87193	-0.00041529	0.009175	4.37E-06	476.2897840678629	18.923	0.44439	18.767	18.544	18.989	-0.15637					21	8	3	0	0	0	0.75307	1	360	360		62.978	2.6845	1	424700			54795	10033	38250	38313	60093	60093					0.08888886262604956
NLQKKHAL	8	Unmodified	_NLQKKHAL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.29058837890625	2	476.290351	950.566149	0.49343	0.00023502	-0.52479	-0.00024995	-0.031359	-1.4936E-05	476.2899039169151	18.986	0.59298	18.782	18.559	19.152	-0.20371					23	11	4	0	0	0	0.78609	1	359	359		60.294	7.9948	1	364080			54796	10033	38250	38313	60094	60094					0.08888886262604956
NLQKNWLR	8	Unmodified	_NLQKNWLR_					0	0	0		ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	ENSG00000068383|ENST00000368594|INPP5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.3038940429688	2	536.306532	1070.59851	-0.49861	-0.00026741	4.4916	0.0024089	3.993	0.0021414	536.811116144694	68.829	0.57056	68.599	68.316	68.886	-0.23048					20	13	2	0	0	0	0.027866	1	7954	7954		31.955	4.0726	1	682140			54797	1382	38251	38314	60095	60095					0.06603673665608767
NLQKRTVE	8	Unmodified	_NLQKRTVE_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2704162597656	2	494.282723	986.550893	-0.1028	-5.0811E-05	-3.7932	-0.0018749	-3.896	-0.0019257	494.2786745443257	77.35	0.55132	77.363	77.145	77.696	0.013504					26	12	3	0	0	0	0.027866	1	9504	9504		27.882	0	1	695160			54798	9278	38252	38315	60096	60096					0.057079746747604077
NLQLSHRP	8	Unmodified	_NLQLSHRP_					0	0	0		nc|ENSG00000124205|P14138-3|EDN3;nc|ENSG00000124205|P14138-2|EDN3;ENSG00000124205|ENST00000337938|EDN3	nc|ENSG00000124205|P14138-3|EDN3	nc|ENSG00000124205|P14138-3|EDN3	MSMS	OPSCC_39_ClassI_Rep-2	2	482.77130126953125	2	482.769783	963.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.77	1	95.775	95.275	96.275	0.0050278								0	0	0	0.7608	1	12167	12167		37.159	1.5408	1				54799	4024	38253	38316	60097	60097					0.041791252231291764
NLQNLQDDL	9	Unmodified	_NLQNLQDDL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2944946289062	2	536.767103	1071.51965	-0.15512	-8.3261E-05	-3.2711	-0.0017558	-3.4262	-0.0018391	536.7652198919507	74.592	0.80278	74.316	74.001	74.804	-0.27573					28	18	2	0	0	0	0.02435	1	8824	8824		60.972	7.6205	1	135610			54800	4485	38254	38317	60098	60098					-0.013246431499965183
NLQRHLLL	8	Unmodified	_NLQRHLLL_					0	0	0		ENST00000378735.5_1_5:132069938-132070013:-|nuORF	ENST00000378735.5_1_5:132069938-132070013:-|nuORF	ENST00000378735.5_1_5:132069938-132070013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2538757324219	2	503.811451	1005.60835	-1.021	-0.00051441	-0.031763	-1.6003E-05	-1.0528	-0.00053041	503.81116236198955	44.94	0.4521	44.792	44.557	45.009	-0.1488					21	12	2	0	0	0	0.027866	1	4281	4281		12.959	0	1	130760			54801	13249	38255	38318	60099	60099					0.10576861670995186
NLQTFNTIL	9	Unmodified	_NLQTFNTIL_					0	0	0		ENST00000484203.5_1_2:86348636-86354493:+|nuORF;ENSG00000132300|ENST00000254630|PTCD3;ENST00000480102.1_1_2:86352635-86354493:+|nuORF;ENST00000594883.1_1_19:57687347-57687830:+|nuORF	ENST00000484203.5_1_2:86348636-86354493:+|nuORF	ENST00000484203.5_1_2:86348636-86354493:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.296875	2	532.292756	1062.57096	-0.53236	-0.00028337	0.43508	0.00023159	-0.097286	-5.1785E-05	532.2929520611472	77.717	0.98764	77.717	77.295	78.282	0					35	23	2	0	0	0	0.32811	1	9599	9599		71.877	0	1	2574200			54802	4588	38256	38319	60100	60100					0.04217725614716983
NLQTFNTIL	9	Unmodified	_NLQTFNTIL_					0	0	0		ENST00000484203.5_1_2:86348636-86354493:+|nuORF;ENSG00000132300|ENST00000254630|PTCD3;ENST00000480102.1_1_2:86352635-86354493:+|nuORF;ENST00000594883.1_1_19:57687347-57687830:+|nuORF	ENST00000484203.5_1_2:86348636-86354493:+|nuORF	ENST00000484203.5_1_2:86348636-86354493:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.2939453125	2	532.292756	1062.57096	-0.61387	-0.00032676	0.41463	0.00022071	-0.19924	-0.00010605	532.2929314404925	77.787	0.86621	77.802	77.449	78.315	0.015907					35	20	2	0	0	0	0.5973	1	9541	9541		52.937	1.6012	1	2472300			54803	4588	38256	38319	60101	60101					0.04217725614716983
NLQTVQLLI	9	Unmodified	_NLQTVQLLI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7803344726562	2	521.318774	1040.623	0.29593	0.00015428	-0.84902	-0.00044261	-0.55308	-0.00028833	521.3182613113577	85.764	1.3179	85.764	85.457	86.775	0					77	30	4	0	0	0	0.022657	1	10767	10767		67.494	12.729	1	1752000			54804	3431	38257	38320	60102	60102					0.10430889028475576
NLQTVQLLI	9	Unmodified	_NLQTVQLLI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3187255859375	2	521.318774	1040.623	-0.37117	-0.0001935	-0.2693	-0.00014039	-0.64048	-0.00033389	521.3185610189183	85.74	1.2724	85.683	85.355	86.628	-0.057617					75	29	4	0	0	0	0.12914	1	10745	10745		104.06	15.88	1	1536100			54805	3431	38257	38320	60103	60103					0.10430889028475576
NLQTVQLLI	9	Unmodified	_NLQTVQLLI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.3189086914062	2	521.318774	1040.623	-1.0295	-0.00053669	0.41655	0.00021716	-0.61293	-0.00031953	521.3189249912526	85.728	1.1867	85.752	85.45	86.637	0.023666					65	27	4	0	0	0	0.10174	2	10686	10686;10699		110.12	5.3733	1	1659400			54806	3431	38257	38320	60104;60105	60104					0.10430889028475576
NLQTVRLV	8	Unmodified	_NLQTVRLV_					0	0	0		ENSG00000165929|ENST00000435962|TC2N	ENSG00000165929|ENST00000435962|TC2N	ENSG00000165929|ENST00000435962|TC2N	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.789794921875	2	471.790184	941.565815	0.082764	3.9047E-05	-0.97161	-0.00045839	-0.88884	-0.00041935	471.7897649574988	47.919	1.4407	47.919	47.529	48.969	0					126	42	5	0	0	0	0.83003	1	4816	4816		56.721	1.9447	1	49165000			54807	7486	38258	38321	60106	60106					0.09269466542764349
NLRAKMYSI	9	Unmodified	_NLRAKMYSI_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3108520507812	2	548.302601	1094.59065	-0.3886	-0.00021307	-2.9722	-0.0016296	-3.3608	-0.0018427	548.3006600245135	64.109	1.0653	63.881	63.549	64.614	-0.22773					67	19	5	0	0	0	0.024523	1	7237	7237		10.265	0	1	913490			54808	1023	38259	38322	60107	60107					0.04713778353811904
NLRAVRAS	8	Unmodified	_NLRAVRAS_					0	0	0			REV__C12orf10-NFX1|1|fusion	REV__C12orf10-NFX1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.7650451660156	2	443.764501	885.514448	0.12053	5.3487E-05	-0.029402	-1.3048E-05	0.091129	4.044E-05	443.76444607559887	78.654	3.0913	78.399	77.578	80.67	-0.25471					182	73	3	0	0	0	0.99042	1	9371	9371		38.806	5.2906	1	709500	+		54809	19226	38260	38323	60108	60108					0.06711142568701689
NLRAVRAS	8	Unmodified	_NLRAVRAS_					0	0	0			REV__C12orf10-NFX1|1|fusion	REV__C12orf10-NFX1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.764501	885.514448	-0.15194	-6.7425E-05	0.335	0.00014866	0.18306	8.1237E-05	443.7645822356841	78.032	3.7898	78.032	77.469	81.258	0	-0.23576	0.00022998	NaN	38.806	204	91	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614780	+		54810	19226	38260	38323							0.06711142568701689
NLRAVRAS	8	Unmodified	_NLRAVRAS_					0	0	0			REV__C12orf10-NFX1|1|fusion	REV__C12orf10-NFX1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.764501	885.514448	-0.003241	-1.4383E-06	0.10769	4.7788E-05	0.10445	4.635E-05	443.7644990083818	78.465	3.7032	78.273	77.055	80.759	-0.1921	0.0053689	2.8237E-05	NaN	38.806	163	88	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565420	+		54811	19226	38260	38323							0.06711142568701689
NLRAVRAS	8	Unmodified	_NLRAVRAS_					0	0	0			REV__C12orf10-NFX1|1|fusion	REV__C12orf10-NFX1|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.764501	885.514448	-0.17407	-7.7248E-05	0.60085	0.00026664	0.42678	0.00018939	443.7646261701478	78.308	3.9948	78.324	77.449	81.444	0.015907	0.056273	0.00046593	NaN	38.806	170	96	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529980	+		54812	19226	38260	38323							0.06711142568701689
NLRAVRAS	8	Unmodified	_NLRAVRAS_					0	0	0			REV__C12orf10-NFX1|1|fusion	REV__C12orf10-NFX1|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.764501	885.514448	0.22405	9.9425E-05	-0.21923	-9.7287E-05	0.0048182	2.1382E-06	443.7643592905139	78.541	4.1797	78.31	77.201	81.381	-0.23141	0.042303	-0.00026191	NaN	38.806	209	99	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	552600	+		54813	19226	38260	38323							0.06711142568701689
NLRCLGHA	8	Unmodified	_NLRCLGHA_					0	0	0		ENST00000567840.5_1_15:43132615-43212683:-|nuORF	ENST00000567840.5_1_15:43132615-43212683:-|nuORF	ENST00000567840.5_1_15:43132615-43212683:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.2318115234375	2	442.231979	882.449405	-0.26122	-0.00011552	-0.62614	-0.0002769	-0.88736	-0.00039242	442.23161775509965	46.975	1.6118	46.878	46.539	48.151	-0.096649					107	43	4	0	0	0	0.88442	1	4595	4595		52.299	15.271	1	11530000			54814	16970	38261	38324	60109	60109					0.0034782477121098054
NLRDTKHKE	9	Unmodified	_NLRDTKHKE_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.7796630859375	2	570.809636	1139.60472	1.75	0.00099891	1.5326	0.00087484	3.2826	0.0018738	570.8104066886596	36.573	0.72223	36.375	36.054	36.776	-0.19829					42	17	4	0	0	0	0.024541	1	2827	2827		25.574	6.4705	1	647370			54815	1111	38262	38325	60110	60110					0.04050147106477198
NLRDTKHKE	9	Unmodified	_NLRDTKHKE_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	570.809636	1139.60472	0.048249	2.7541E-05	3.5911	0.0020498	3.6393	0.0020774	570.8113968373242	36.644	0.63599	36.439	36.203	36.839	-0.20518	0.02768	0.0010128	NaN	13.454	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	715510			54816	1111	38262	38325							0.04050147106477198
NLRDTKHKE	9	Unmodified	_NLRDTKHKE_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	570.809636	1139.60472	0.064283	3.6694E-05	3.3384	0.0019056	3.4027	0.0019423	570.8112858548374	36.637	0.64307	36.42	36.126	36.769	-0.21661	0.0088109	0.00072435	NaN	13.454	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	694540			54817	1111	38262	38325							0.04050147106477198
NLREQNVLI	9	Unmodified	_NLREQNVLI_					0	0	0			REV__ENSG00000122547|ENST00000242108|EEPD1	REV__ENSG00000122547|ENST00000242108|EEPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.740478515625	2	549.81693	1097.61931	-0.2109	-0.00011596	3.2668	0.0017961	3.0559	0.0016802	549.8185576941077	42.443	0.48839	42.32	42.116	42.604	-0.12299					19	12	2	0	0	0	0.024447	1	3860	3860		32.812	11.865	1	159090	+		54818	22651	38263	38326	60111	60111					0.07440219254635849
NLREQNVLI	9	Unmodified	_NLREQNVLI_					0	0	0			REV__ENSG00000122547|ENST00000242108|EEPD1	REV__ENSG00000122547|ENST00000242108|EEPD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.81693	1097.61931	-0.42521	-0.00023379	3.6483	0.0020059	3.2231	0.0017721	549.8188789695162	42.624	0.41006	42.392	42.234	42.644	-0.23186	0.0047047	8.9495E-05	NaN	32.812	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216170	+		54819	22651	38263	38326							0.07440219254635849
NLRGGLLGNK	10	Unmodified	_NLRGGLLGNK_					0	0	0			REV__ENST00000255189.7_1_5:78326753-78329103:-|nuORF	REV__ENST00000255189.7_1_5:78326753-78329103:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7473754882812	2	521.311815	1040.60908	-0.032752	-1.7074E-05	0.1403	7.3139E-05	0.10755	5.6065E-05	521.3120155758558	35.723	0.39117	35.511	35.193	35.584	-0.21246					14	9	3	0	0	0	0.03519	1	2704	2704		25.574	0	1	54076	+		54820	29540	38264	38327	60112	60112					0.09039656320032918
NLRGGLLGNK	10	Unmodified	_NLRGGLLGNK_					0	0	0			REV__ENST00000255189.7_1_5:78326753-78329103:-|nuORF	REV__ENST00000255189.7_1_5:78326753-78329103:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.311815	1040.60908	-1.2374	-0.00064505	1.9545	0.0010189	0.71715	0.00037386	521.3128113818418	35.636	0.35707	35.612	35.423	35.781	-0.024422	0.062303	0.00021522	NaN	24.519	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238930	+		54821	29540	38264	38327							0.09039656320032918
NLRGKNPIF	9	Unmodified	_NLRGKNPIF_					0	0	0			REV__nc|ENSG00000169302|Q8WU08-3|STK32A	REV__nc|ENSG00000169302|Q8WU08-3|STK32A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8163452148438	2	529.808908	1057.60326	-0.37753	-0.00020002	-0.8861	-0.00046946	-1.2636	-0.00066948	529.808267821175	67.468	1.1102	67.23	66.998	68.109	-0.23814					28	10	4	0	0	0	0.024	1	7882	7882		65.803	3.6958	1	308980	+		54822	26351	38265	38328	60113	60113					0.07676557808349571
NLRGQDTDT	9	Unmodified	_NLRGQDTDT_					0	0	0			REV__ENST00000510937.1_1_5:137143741-137143912:+|nuORF	REV__ENST00000510937.1_1_5:137143741-137143912:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7641296386719	2	510.241252	1018.46795	-0.64217	-0.00032766	-2.8687	-0.0014637	-3.5109	-0.0017914	510.240075030025	25.953	0.45537	25.717	25.425	25.88	-0.23603					22	10	3	0	0	0	0.024436	1	1272	1272		30.504	14.862	1	96883	+		54823	34113	38266	38329	60114	60114					-0.04054386843904467
NLRGSPLL	8	Unmodified	_NLRGSPLL_					0	0	0			REV__ENST00000603513.1_1_7:130038734-130038947:-|nuORF	REV__ENST00000603513.1_1_7:130038734-130038947:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7801513671875	2	435.263802	868.513051	-0.4591	-0.00019983	0.74079	0.00032244	0.28169	0.00012261	435.26396177425863	40.22	0.33023	40.071	39.859	40.189	-0.1497					18	8	3	0	0	0	0.027866	1	3478	3478		29.15	0	1	233630	+		54824	35896	38267	38330	60115	60115					0.07353508479945958
NLRGSPLL	8	Unmodified	_NLRGSPLL_					0	0	0			REV__ENST00000603513.1_1_7:130038734-130038947:-|nuORF	REV__ENST00000603513.1_1_7:130038734-130038947:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	435.263802	868.513051	-0.069141	-3.0095E-05	0.67313	0.00029299	0.60399	0.00026289	435.26405539069464	40.383	0.44097	40.158	39.891	40.332	-0.225					17	11	2	0	0	0	0.027866	1	3478	3478		55.504	0	1	201740	+		54825	35896	38267	38330	60116	60116					0.07353508479945958
NLRIQRYT	8	Unmodified	_NLRIQRYT_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.3040771484375	2	532.30399	1062.59343	0.34343	0.00018281	0.12571	6.6917E-05	0.46914	0.00024973	532.3036676970412	19.529	0.59543	19.329	19.106	19.701	-0.2001					33	11	4	0	0	0	1.043	1	437	437		30.504	2.6214	1	471830	+		54826	20289	38268	38331	60117	60117					0.06463369802986563
NLRKGDYQMQI	11	Unmodified	_NLRKGDYQMQI_					0	0	0			REV__ENSG00000214787|ENST00000651255|MS4A4E	REV__ENSG00000214787|ENST00000651255|MS4A4E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2692565917969	3	455.902966	1364.68707	0.08246	3.7594E-05	0.49849	0.00022726	0.58095	0.00026486	456.23702408619613	45.308	0.54149	45.308	45.006	45.548	0					21	15	2	0	0	0	0.024743	1	4390	4390		36.318	0	1	462680	+		54827	28786	38269	38332	60118	60118					0.019313011231133714
NLRKLAEAL	9	Unmodified	_NLRKLAEAL_					0	0	0		ENSG00000073169|ENST00000380903|SELENOO;ENST00000380903.6_1_22:50639465-50655786:+|nuORF;ENST00000492092.1_1_22:50644878-50655786:+|nuORF	ENSG00000073169|ENST00000380903|SELENOO	ENSG00000073169|ENST00000380903|SELENOO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7904052734375	2	514.316566	1026.61858	-0.89018	-0.00045783	1.3001	0.00066868	0.40995	0.00021084	514.316861572588	21.531	0.4779	21.602	21.352	21.83	0.071487					15	9	2	0	0	0	0.024205	1	652	652		44.117	6.3053	1	29870			54828	1503	38270	38333	60119	60119					0.10633424605566688
NLRKSLCLG	9	Unmodified	_NLRKSLCLG_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7974853515625	2	502.289494	1002.56443	-1.0009	-0.00050276	-2.4405	-0.0012258	-3.4414	-0.0017286	502.2881453058232	38.382	0.71835	38.382	38.003	38.721	0					34	19	3	0	0	0	0.02435	1	3255	3255		51.335	5.3835	1	1172900	+		54829	24820	38271	38334	60120	60120					0.06325509182352107
NLRKSLCLG	9	Unmodified	_NLRKSLCLG_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7974853515625	2	502.289494	1002.56443	-1.4419	-0.00072424	-1.7496	-0.0008788	-3.1915	-0.001603	502.2882955306994	38.605	0.83492	38.632	38.162	38.997	0.027275					57	22	3	0	0	0	0.024405	1	3223	3223		27.882	0	1	1003000	+		54830	24820	38271	38334	60121	60121					0.06325509182352107
NLRKSLCLG	9	Unmodified	_NLRKSLCLG_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.289494	1002.56443	-0.79023	-0.00039692	-9.4823	-0.0047629	-10.273	-0.0051598	502.2852350932314	38.386	0.65173	38.207	37.809	38.461	-0.17929	-0.13279	-0.0069198	NaN	51.335	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154110	+		54831	24820	38271	38334							0.06325509182352107
NLRKSLCLG	9	Unmodified	_NLRKSLCLG_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.289494	1002.56443	-0.68014	-0.00034163	-6.3744	-0.0032018	-7.0545	-0.0035434	502.2858579810831	38.425	0.52398	38.207	37.926	38.45	-0.21848	-0.13266	-0.0037976	NaN	51.335	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190600	+		54832	24820	38271	38334							0.06325509182352107
NLRLPLTSV	9	Unmodified	_NLRLPLTSV_					0	0	0			REV__nc|ENSG00000100505|Q9C026-4|TRIM9	REV__nc|ENSG00000100505|Q9C026-4|TRIM9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.2728576660156	2	506.811116	1011.60768	0.53624	0.00027177	4.0536	0.0020544	4.5898	0.0023262	507.31506533331594	70.573	0.34682	70.573	70.44	70.787	0					10	7	2	0	0	0	0.024477	1	8543	8543		27.882	0	1	210100	+		54833	36520	38272	38335	60122	60122					0.1023402223128187
NLRMSVEADI	10	Unmodified	_NLRMSVEADI_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant	CON__P02533	CON__P02533	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	573.3013916015625	2	574.29243	1146.57031	-1.5119	-0.00086825	-0.12132	-6.9675E-05	-1.6332	-0.00093792	574.793426543342	32.682	0.33334	32.682	32.494	32.827	0					13	8	3	0	0	0	0.03519	1	2283	2283		24.519	0	1	73609		+	54834	502	38273	38336	60123	60123					0.002885629033698933
NLRNTLDGY	9	Unmodified	_NLRNTLDGY_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2351684570312	2	533.269813	1064.52507	-0.25063	-0.00013365	-0.56675	-0.00030223	-0.81738	-0.00043588	533.2691846382703	58.289	0.55305	58.381	58.118	58.671	0.091217					28	14	3	0	0	0	0.024457	1	6530	6530		29.15	0	1	335920			54835	1738	38274	38337	60124	60124					-0.004609195675357114
NLRQQILELL	10	Unmodified	_NLRQQILELL_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.24053955078125	3	413.918834	1238.73467	0.507	0.00020986	-0.82156	-0.00034006	-0.31456	-0.0001302	413.9186789570609	34.031	0.51648	34.031	33.816	34.332	0					20	12	2	0	0	0	0.03519	1	2539	2539		6.3209	0	1	165320			54836	1746	38275	38338	60125	60125					0.12485323385612901
NLRRKPQT	8	Unmodified	_NLRRKPQT_					0	0	0		ENST00000434982.2_1_5:55407235-55412649:-|nuORF;ENST00000341048.8_1_5:55407235-55422869:-|nuORF	ENST00000434982.2_1_5:55407235-55412649:-|nuORF	ENST00000434982.2_1_5:55407235-55412649:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2800598144531	2	506.804157	1011.59376	-0.10351	-5.2458E-05	2.9785	0.0015095	2.875	0.001457	506.8055811880959	49.846	0.76824	49.695	49.33	50.098	-0.1512					40	19	3	0	0	0	0.027866	1	5211	5211		23.042	0	1	561300			54837	12481	38276	38339	60126	60126					0.08842789522861949
NLRRVSLD	8	Unmodified	_NLRRVSLD_					0	0	0		ENST00000341735.3_1_15:90319632-90321465:+|nuORF;MESP2|p.Q256Vfs*110|1|0.28|ENSG00000188095|chr15:89777122-89777123|AC/-|frameshift_variant	ENST00000341735.3_1_15:90319632-90321465:+|nuORF	ENST00000341735.3_1_15:90319632-90321465:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.83642578125	2	486.78289	971.551228	-0.25573	-0.00012449	3.298	0.0016054	3.0423	0.0014809	486.7839447730492	33.976	0.19761	33.769	33.627	33.824	-0.20696					7	4	2	0	0	0	0.027866	1	2442	2442		45.952	0	1	48061			54838	12499	38277	38340	60127	60127					0.06431394394610379
NLRRVSNHKKY	11	Unmodified	_NLRRVSNHKKY_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.272705078125	3	472.272381	1413.79531	3.2764	0.0015474	-3.3652	-0.0015893	-0.088807	-4.1941E-05	472.27077352224944	18.219	0.39871	17.977	17.776	18.175	-0.24256					18	7	3	0	0	0	1.0739	1	253	253		18.531	0.69791	1	56775			54839	990	38278	38341	60128	60128					0.10496853488552915
NLRSLFTN	8	Unmodified	_NLRSLFTN_					0	0	0			REV__ENSG00000165943|ENST00000298894|MOAP1	REV__ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.7622985839844	2	482.764166	963.513779	0.12105	5.8439E-05	-3.8758	-0.0018711	-3.7547	-0.0018126	482.76214071742976	87.716	2.8054	87.537	86.393	89.198	-0.17875					142	67	3	0	0	0	0.73796	1	10631	10631		64.207	6.396	1	829440	+		54840	25947	38279	38342	60129	60129					0.030563031290057552
NLRSRAQP	8	Unmodified	_NLRSRAQP_					0	0	0			REV__ENSG00000109501|ENST00000226760|WFS1	REV__ENSG00000109501|ENST00000226760|WFS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7853088378906	2	471.267407	940.520262	-0.11488	-5.4142E-05	4.443	0.0020938	4.3281	0.0020397	471.26934001260463	54.616	0.47602	54.616	54.393	54.869	0					23	13	2	0	0	0	0.027866	1	5981	5981		45.952	3.4775	1	288960	+		54841	21797	38280	38343	60130	60130					0.04762241080379681
NLRSTMLSH	9	Unmodified	_NLRSTMLSH_					0	0	0			REV__nc|ENSG00000251608|P0DN82|OR12D1	REV__nc|ENSG00000251608|P0DN82|OR12D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8059692382812	2	529.774208	1057.53386	-0.2057	-0.00010897	-2.9993	-0.001589	-3.205	-0.0016979	529.7740908260812	49.431	0.40649	49.431	49.324	49.731	0					14	10	2	0	0	0	0.024477	1	5149	5149		20.947	0	1	126930	+		54842	37169	38281	38344	60131	60131					0.007397307973178613
NLRTRVCR	8	Unmodified	_NLRTRVCR_					0	0	0			REV__ENST00000448129.1_1_3:12920486-12926576:-|nuORF	REV__ENST00000448129.1_1_3:12920486-12926576:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29296875	2	509.290359	1016.56617	-0.56739	-0.00028897	0.09122	4.6458E-05	-0.47617	-0.00024251	509.29026524777504	52.926	1.1362	52.926	52.236	53.372	0					59	29	3	0	0	0	0.027866	1	5596	5596		33.516	3.674	1	857650	+		54843	32655	38282	38345	60132	60132					0.05854562990964496
NLRTRVCR	8	Unmodified	_NLRTRVCR_					0	0	0			REV__ENST00000448129.1_1_3:12920486-12926576:-|nuORF	REV__ENST00000448129.1_1_3:12920486-12926576:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.290359	1016.56617	-0.049419	-2.5169E-05	-0.65747	-0.00033485	-0.70689	-0.00036001	509.2900194908922	52.753	1.027	52.845	52.2	53.227	0.091938	-0.13154	-5.4343E-05	NaN	25.45	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	966110	+		54844	32655	38282	38345							0.05854562990964496
NLRVESMEI	9	Unmodified	_NLRVESMEI_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.7806396484375	2	545.781699	1089.54884	0.91658	0.00050025	-1.3316	-0.00072677	-0.41503	-0.00022651	545.7808394008312	63.93	0.67832	63.976	63.546	64.225	0.045502					51	18	4	0	0	0	0.2508	1	7430	7430		82.241	0	1	3131400	+		54845	20903	38283	38346	60133	60133					0.007651778746321725
NLSALLMVI	9	Unmodified	_NLSALLMVI_					0	0	0			REV__ENSG00000180914|ENST00000316793|OXTR	REV__ENSG00000180914|ENST00000316793|OXTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.27984619140625	2	487.291171	972.567789	-0.48405	-0.00023587	3.8127	0.0018579	3.3287	0.001622	487.29288192548404	23.199	0.50034	23.199	22.94	23.441	0					24	11	3	0	0	0	0.024487	1	920	920		24.203	4.206	1	309780	+		54846	27372	38284	38347	60134	60134					0.08040759236359918
NLSALQAKPR	10	Unmodified	_NLSALQAKPR_					0	0	0		ENST00000238156.7_1_12:124421304-124421517:-|nuORF	ENST00000238156.7_1_12:124421304-124421517:-|nuORF	ENST00000238156.7_1_12:124421304-124421517:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3425903320312	2	549.324922	1096.63529	-0.81272	-0.00044645	-0.65904	-0.00036203	-1.4718	-0.00080847	549.323642804933	50.08	0.20261	50.08	49.913	50.116	0					7	5	2	0	0	0	0.03519	1	5211	5211		32.812	0	1	93727			54847	11266	38285	38348	60135	60135					0.09083925491495393
NLSDGISLLL	10	Unmodified	_NLSDGISLLL_					0	0	0		ENST00000477332.5_1_1:113149890-113161548:-|nuORF;ENST00000473206.5_1_1:113149890-113161735:-|nuORF	ENST00000477332.5_1_1:113149890-113161548:-|nuORF	ENST00000477332.5_1_1:113149890-113161548:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.8026123046875	2	522.800414	1043.58628	0.59174	0.00030936	3.2828	0.0017163	3.8746	0.0020256	522.8020295785374	97.06	1.5574	96.924	96.263	97.82	-0.13671					116	34	4	0	0	0	0.50517	1	11991	11991		87.696	2.337	1	2308700			54848	15005	38286	38349	60136	60136					0.06622592411918049
NLSDNFIR	8	Unmodified	_NLSDNFIR_					0	0	0		ENST00000405154.6_1_12:26223893-26224001:+|nuORF	ENST00000405154.6_1_12:26223893-26224001:+|nuORF	ENST00000405154.6_1_12:26223893-26224001:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2517395019531	2	489.753798	977.493044	-0.36927	-0.00018085	0.76144	0.00037292	0.39217	0.00019207	489.75400444145436	73.403	0.4809	73.403	73.072	73.553	0					22	12	2	0	0	0	0.027866	1	8956	8956		75.043	0	1	1093200			54849	13710	38287	38350	60137	60137					0.003397127493371954
NLSDQILQV	9	Unmodified	_NLSDQILQV_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2821655273438	2	515.282389	1028.55022	-0.62164	-0.00032032	-0.13059	-6.7292E-05	-0.75224	-0.00038761	515.282520907108	65.301	1.4639	65.338	64.78	66.244	0.037384					144	39	5	0	0	0	0.15366	1	7760	7760		98.629	15.879	1	185700000			54850	821	38288	38351	60138	60138					0.03709135235044414
NLSEIKTH	8	Unmodified	_NLSEIKTH_					0	0	0			REV__chr17:40864856-41502937|137|17.41|0.0|12.37|-|0|None,KRT13|1	REV__chr17:40864856-41502937|137|17.41|0.0|12.37|-|0|None,KRT13|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.3288879394531	2	471.256174	940.497795	-0.40143	-0.00018918	0.68536	0.00032298	0.28392	0.0001338	471.25615429310767	22.669	0.41085	22.484	22.281	22.692	-0.18539					14	8	2	0	0	0	0.027866	1	813	813		40.573	17.53	1	64081	+		54851	19387	38289	38352	60139	60139					0.025165968920987325
NLSFVRGLA	9	Unmodified	_NLSFVRGLA_					0	0	0			REV__ENSG00000279051|ENST00000302622|OR6Q1	REV__ENSG00000279051|ENST00000302622|OR6Q1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7823181152344	2	488.782359	975.550165	0.16432	8.0315E-05	-0.88068	-0.00043046	-0.71637	-0.00035015	488.7818646070015	40.311	1.7687	40.311	39.627	41.396	0					137	49	4	0	0	0	0.4752	1	3524	3524		60.972	7.6205	1	10770000	+		54852	29226	38290	38353	60140	60140					0.061411800257246796
NLSICPKSNDH	11	Carbamidomethyl (C)	_NLSIC(Carbamidomethyl (C))PKSNDH_	NLSIC(1)PKSNDH		NLSIC(71)PKSNDH		0	1	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	642.8020629882812	2	642.803694	1283.59283	0.89928	0.00057806	-3.5046	-0.0022528	-2.6053	-0.0016747	642.8013949704122	36.718	1.3436	36.509	36.201	37.545	-0.2092					80	33	4	0	0	0	0.58492	1	2885	2885		70.816	23.159	1	2190400	+		54853	25223	38291	38354	60141	60141	331				-0.037618376990167235
NLSKLFPKL	9	Unmodified	_NLSKLFPKL_					0	0	0			REV__ENSG00000095370|ENST00000314830|SH2D3C	REV__ENSG00000095370|ENST00000314830|SH2D3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.80810546875	2	530.331685	1058.64882	-0.42246	-0.00022404	0.27714	0.00014698	-0.14532	-7.7068E-05	530.3319836539495	73.426	0.22409	73.436	73.255	73.479	0.0096512					10	5	3	0	0	0	0.024418	1	8864	8864		54.776	13.998	1	124880	+		54854	20963	38292	38355	60142	60142					0.12183783270756976
NLSLCGLLLN	10	Unmodified	_NLSLCGLLLN_					0	0	0			REV__PKD1L1|p.D1451N|1|0.32|ENSG00000158683|chr7:47858684-47858684|C/T|missense_variant	REV__PKD1L1|p.D1451N|1|0.32|ENSG00000158683|chr7:47858684-47858684|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.3113403320312	2	530.296985	1058.57942	-1.3548	-0.00071847	-1.9303	-0.0010236	-3.2851	-0.0017421	530.2967036240029	60.675	1.048	60.499	60.116	61.164	-0.1761					49	25	3	0	0	0	0.03519	1	6756	6756		24.519	7.1542	1	297440	+		54855	37379	38293	38356	60143	60143					0.05246956259725266
NLSLRLLTL	9	Unmodified	_NLSLRLLTL_					0	0	0		ENST00000395825.3_1_17:16471178-16472431:-|nuORF;ENST00000395824.5_1_17:16471178-16472262:-|nuORF	ENST00000395825.3_1_17:16471178-16472431:-|nuORF	ENST00000395825.3_1_17:16471178-16472431:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7838745117188	2	521.834591	1041.65463	-0.84282	-0.00043982	-1.793	-0.00093566	-2.6358	-0.0013755	522.3344014113827	69.53	0.70893	69.263	69.037	69.746	-0.26724					22	16	2	0	0	0	0.024367	1	8117	8117		44.377	0	1	99290			54856	13531	38294	38357	60144	60144					0.13546881782417586
NLSPSLLKP	9	Unmodified	_NLSPSLLKP_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;ENST00000552420.5_1_12:57870791-57873587:-|nuORF	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.78814697265625	2	484.792392	967.570232	-0.61161	-0.0002965	1.1453	0.00055521	0.53364	0.00025871	484.7925834348235	44.596	0.3736	44.633	44.443	44.817	0.0369					14	10	2	0	0	0	0.024253	1	4229	4229		37.508	13.305	1	226440			54857	3968	38295	38358	60145	60145					0.08514930965679923
NLSQGHDSL	9	Unmodified	_NLSQGHDSL_					0	0	0			REV__nc|ENSG00000196660|Q6XR72-2|SLC30A10	REV__nc|ENSG00000196660|Q6XR72-2|SLC30A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.73333740234375	2	485.733063	969.451573	-0.13623	-6.6174E-05	-3.6967	-0.0017956	-3.8329	-0.0018618	485.7310940814935	72.788	0.68659	72.511	72.24	72.926	-0.2769					38	15	3	0	0	0	0.30449	1	8543	8543		75.043	21.692	1	649450	+		54858	28211	38296	38359	60146	60146					-0.034374680099972466
NLSQNVQEDD	10	Unmodified	_NLSQNVQEDD_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.7802734375	2	581.254557	1160.49456	-0.97978	-0.0005695	3.1121	0.0018089	2.1323	0.0012394	581.2564577523657	44.5	0.46363	44.395	44.203	44.667	-0.10468					25	11	3	0	0	0	0.03519	1	4184	4184		14.865	8.1293	1	254460			54859	10139	38297	38360	60147	60147					-0.07926742743211435
NLSRLLVSL	9	Unmodified	_NLSRLLVSL_					0	0	0			REV__ENST00000373344.9_1_X:76856023-76874283:-|nuORF	REV__ENST00000373344.9_1_X:76856023-76874283:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.78204345703125	2	507.818941	1013.62333	0.051759	2.6284E-05	-0.93741	-0.00047603	-0.88565	-0.00044975	507.8184473496516	42.162	0.36788	42.162	41.954	42.322	0					19	10	2	0	0	0	0.0242	1	3878	3878		42.864	0	1	147060	+		54860	31252	38298	38361	60148	60148					0.1170630874833023
NLSRNQLSL	9	Unmodified	_NLSRNQLSL_					0	0	0		ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7948608398438	2	522.793455	1043.57236	-0.020009	-1.046E-05	3.6537	0.0019101	3.6337	0.0018997	522.7952389325403	68.577	0.81238	68.284	68.013	68.825	-0.29267					67	20	6	0	0	0	0.19099	1	8181	8181		90.37	10.431	1	3288000			54861	1611	38299	38362	60149	60149					0.052313597034981285
NLSRNQLSL	9	Unmodified	_NLSRNQLSL_					0	0	0		ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7957153320312	2	522.793455	1043.57236	0.25862	0.00013521	3.4615	0.0018096	3.7201	0.0019448	522.7951400544905	68.337	0.75356	68.356	68.08	68.833	0.018913					56	19	4	0	0	0	0.16638	1	8102	8102		95.815	3.6245	1	3183300			54862	1611	38299	38362	60150	60150					0.052313597034981285
NLSRNQLSL	9	Unmodified	_NLSRNQLSL_					0	0	0		ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.793455	1043.57236	-0.7202	-0.00037652	4.7712	0.0024944	4.051	0.0021179	522.7956877546449	68.566	0.52365	68.304	68.063	68.586	-0.26166	0.027638	0.00093994	NaN	95.815	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456120			54863	1611	38299	38362							0.052313597034981285
NLSRNQLSL	9	Unmodified	_NLSRNQLSL_					0	0	0		ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.793455	1043.57236	0.51962	0.00027165	4.1056	0.0021464	4.6252	0.002418	522.7951001903907	68.513	0.59442	68.27	67.992	68.587	-0.24277	-0.0064465	0.00024398	NaN	95.815	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519860			54864	1611	38299	38362							0.052313597034981285
NLSRNQLSL	9	Unmodified	_NLSRNQLSL_					0	0	0		ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.793455	1043.57236	0.54347	0.00028412	3.8858	0.0020315	4.4293	0.0023156	522.7950688642578	68.452	0.56142	68.222	67.958	68.52	-0.23048	-0.055044	1.4155E-05	NaN	95.815	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378410			54865	1611	38299	38362							0.052313597034981285
NLSRTIKMV	9	Unmodified	_NLSRTIKMV_					0	0	0			REV__ENST00000562215.1_1_16:20810515-20810692:-|nuORF	REV__ENST00000562215.1_1_16:20810515-20810692:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2556762695312	2	531.310426	1060.6063	-0.88073	-0.00046794	-1.8328	-0.00097377	-2.7135	-0.0014417	531.3093469151655	28.775	0.42453	28.772	28.583	29.007	-0.0034943					16	9	2	0	0	0	0.024427	1	1695	1695		42.396	1.618	1	36508	+		54866	28214	38300	38363	60151	60151					0.0784206487087431
NLSSAFVLV	9	Unmodified	_NLSSAFVLV_					0	0	0			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.2714538574219	2	475.271293	948.528032	-0.56657	-0.00026927	0.69093	0.00032838	0.12436	5.9104E-05	475.27145252332144	80.123	0.96736	79.972	79.631	80.598	-0.15169					64	22	4	0	0	0	0.13494	1	9929	9929		102.77	8.7669	1	2754800	+		54867	26721	38301	38364	60152	60152					0.05170955557287016
NLSSIARLID	10	Unmodified	_NLSSIARLID_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.302734375	2	551.316763	1100.61897	-0.2136	-0.00011776	3.9065	0.0021537	3.6929	0.0020359	551.3190448287646	97.87	0.45016	97.705	97.306	97.756	-0.1652					5	3	2	0	0	0	0.03519	1	12072	12072		49.536	10.283	1	34734	+		54868	28706	38302	38365	60153	60153					0.07268799534767822
NLSSKRYAE	9	Unmodified	_NLSSKRYAE_					0	0	0			REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2	REV__nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3193969726562	2	534.277638	1066.54072	-0.91837	-0.00049067	0.83559	0.00044644	-0.082784	-4.423E-05	534.2779688416397	33.496	0.70378	33.503	33.255	33.959	0.0066261					44	18	3	0	0	0	0.024263	1	2439	2439		34.173	0	1	1287800	+		54869	28372	38303	38366	60154	60154					0.010113669495240174
NLSVGLAKGPG	11	Unmodified	_NLSVGLAKGPG_					0	0	0			REV__ENST00000233596.7_3_19:1497206-1497893:+|nuORF	REV__ENST00000233596.7_3_19:1497206-1497893:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3052062988281	2	506.792924	1011.57129	-0.089752	-4.5486E-05	0.63764	0.00032315	0.54789	0.00027766	507.29475028258594	41.502	0.38203	41.378	41.155	41.537	-0.12318					14	10	2	0	0	0	0.024795	1	3707	3707		42.864	8.6917	1	66027	+		54870	29419	38304	38367	60155	60155					0.06597145334581
NLSVIGLKT	9	Unmodified	_NLSVIGLKT_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.G2284Efs*5|1|0.2|ENSG00000188906|chr12:40359266-40359266|G/-|frameshift_variant;LRRK2|p.L139S|1|0.14|ENSG00000188906|chr12:40235694-40235694|T/C|missense_variant	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7615661621094	2	472.792392	943.570232	0.016491	7.7969E-06	0.086698	4.099E-05	0.10319	4.8787E-05	472.79231604645986	31.989	0.55561	32.054	31.762	32.317	0.064856					31	13	3	0	0	0	0.024511	1	2171	2171		40.778	0	1	854530			54871	9764	38305	38368	60156	60156					0.0961893096566655
NLSVKHSL	8	Unmodified	_NLSVKHSL_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;TEP1|p.G766Wfs*26|1|0.12|ENSG00000129566|chr14:20390719-20390720|-/A|frameshift_variant	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.2607116699219	2	449.261259	896.507966	-0.056829	-2.5531E-05	0.39068	0.00017552	0.33385	0.00014999	449.2612516033089	31.363	0.82163	31.122	30.585	31.407	-0.24109					37	20	2	0	0	0	0.44658	1	2078	2078		90.777	10.837	1	1340500			54872	4358	38306	38369	60157	60157					0.05557204617343814
NLSYLLIKP	9	Unmodified	_NLSYLLIKP_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8267822265625	2	530.823692	1059.63283	-0.063104	-3.3497E-05	3.8125	0.0020238	3.7494	0.0019903	530.8257253144554	68.465	0.60238	68.222	67.828	68.43	-0.24278					29	14	3	0	0	0	0.024495	1	7931	7931		34.173	3.6689	1	374360	+		54873	23887	38307	38370	60158	60158					0.10540077033874695
NLSYRLAAE	9	Unmodified	_NLSYRLAAE_					0	0	0		nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7928466796875	2	518.774731	1035.53491	1.2911	0.0006698	0.20368	0.00010566	1.4948	0.00077547	519.2756909085837	63.905	0.35707	63.951	63.724	64.081	0.045506					13	9	2	0	0	0	0.024397	1	7427	7427		31.53	0	1	704010			54874	7981	38308	38371	60159	60159					0.018562684378593985
NLSYRLAAE	9	Unmodified	_NLSYRLAAE_					0	0	0		nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.774731	1035.53491	0.099278	5.1503E-05	3.6728	0.0019053	3.772	0.0019568	518.7762630127871	63.732	0.18179	63.54	63.456	63.638	-0.19243	-0.32042	0.0034336	NaN	18.262	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79648			54875	7981	38308	38371							0.018562684378593985
NLTCECKDL	9	Unmodified	_NLTCECKDL_					0	0	0		nc|ENSG00000206203|Q96PF2|TSSK2	nc|ENSG00000206203|Q96PF2|TSSK2	nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7321166992188	2	519.73336	1037.45217	-0.069167	-3.5948E-05	-0.23855	-0.00012398	-0.30772	-0.00015993	519.7331431207076	57.168	0.97569	57.004	56.606	57.582	-0.16431					76	26	5	0	0	0	0.5973	1	6407	6407		52.937	5.0211	1	5525100			54876	18676	38309	38372	60160	60160					-0.06506132676827292
NLTDLLYLDLS	11	Unmodified	_NLTDLLYLDLS_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MSMS	OPSCC_39_ClassI_Rep-3	3	640.3460083007812	2	640.342643	1278.67073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.951	1	99.946	99.446	100.45	-0.0050888								0	0	0	0.96463	1	12708	12708		47.657	3.2801	1				54877	8768	38310	38373	60161	60161					0.04254498437990151
NLTEHKRV	8	Unmodified	_NLTEHKRV_					0	0	0		ENSG00000234444|ENST00000423484|ZNF736	ENSG00000234444|ENST00000423484|ZNF736	ENSG00000234444|ENST00000423484|ZNF736	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.3345642089844	2	498.78289	995.551228	1.0479	0.00052268	3.9004	0.0019455	4.9484	0.0024682	498.7845289023724	74.75	0.69678	74.75	74.298	74.995	0					34	16	3	0	0	0	0.027866	1	9095	9095		45.952	25.955	1	129980			54878	10720	38311	38374	60162	60162					0.05327394394623752
NLTGLIGKLE	10	Unmodified	_NLTGLIGKLE_					0	0	0			REV__nc|ENSG00000187164|A0MZ66-7|SHTN1	REV__nc|ENSG00000187164|A0MZ66-7|SHTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.3162841796875	2	529.316232	1056.61791	1.2844	0.00067988	-1.8688	-0.00098917	-0.58433	-0.00030929	529.3151936383892	36.287	1.5152	36.089	35.809	37.324	-0.19829					79	38	4	0	0	0	0.54901	1	2844	2844		82.75	0	1	6646300	+		54879	27919	38312	38375	60163	60163					0.09186585165844008
NLTHPRKV	8	Unmodified	_NLTHPRKV_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7627258300781	2	482.787976	963.561398	-1.001	-0.00048327	0.65507	0.00031626	-0.34594	-0.00016701	482.78836636545213	85.612	0.45155	85.636	85.45	85.902	0.023666					14	10	2	0	0	0	0.027866	1	10675	10675		25.45	13.243	1	113540	+		54880	36458	38313	38376	60164	60164					0.07816002119841414
NLTINQPTV	9	Unmodified	_NLTINQPTV_					0	0	0			REV__CON__Q0VCM5	REV__CON__Q0VCM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.292724609375	2	500.277106	998.53966	0.24521	0.00012267	-1.0066	-0.00050358	-0.76139	-0.00038091	500.27645813249427	47.401	0.94627	47.248	46.659	47.606	-0.15301					66	25	5	0	0	0	0.024323	1	4761	4761		27.882	0	1	452450	+	+	54881	19566	38314	38377	60165	60165					0.040331525806209356
NLTITALVE	9	Unmodified	_NLTITALVE_					0	0	0			REV__FAT1-MTNR1A|1|fusion;REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.3053283691406	2	487.281857	972.549162	1.0662	0.00051955	-1.9558	-0.00095302	-0.88956	-0.00043347	487.2779850488489	20.072	1.172	19.872	19.455	20.627	-0.2001					26	23	3	0	0	0	0.023817	1	453	453		71.296	0	1	28979	+		54882	20725;36021	38315	38378	60166	60166					0.061789208661252815
NLTITQGKLF	10	Unmodified	_NLTITQGKLF_					0	0	0		ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR	ENSG00000171105|ENST00000302850|INSR	ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.2767333984375	2	567.829506	1133.64446	0.62334	0.00035395	2.4394	0.0013851	3.0627	0.0017391	567.8308978316945	82.937	0.73432	82.717	82.478	83.213	-0.22015					35	16	3	0	0	0	0.03519	1	9965	9965		42.396	27.531	1	363620			54883	8111	38316	38379	60167	60167					0.08298274057187882
NLTKIEQLK	9	Unmodified	_NLTKIEQLK_					0	0	0			REV__ENSG00000168394|ENST00000354258|TAP1	REV__ENSG00000168394|ENST00000354258|TAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7846069335938	2	543.829506	1085.64446	-0.23546	-0.00012805	-1.8962	-0.0010312	-2.1317	-0.0011593	543.8279648248645	51.305	0.36096	51.305	51.105	51.466	0					15	9	3	0	0	0	0.024511	1	5402	5402		25.574	9.9322	1	214800	+		54884	26254	38317	38380	60168	60168					0.10506274057161136
NLTKIEQLK	9	Unmodified	_NLTKIEQLK_					0	0	0			REV__ENSG00000168394|ENST00000354258|TAP1	REV__ENSG00000168394|ENST00000354258|TAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.829506	1085.64446	-1.6854	-0.00091658	-0.61426	-0.00033406	-2.2997	-0.0012506	543.8290799792685	51.182	0.32906	51.269	51.116	51.445	0.087009	-0.049709	0.00054485	NaN	25.574	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115470	+		54885	26254	38317	38380							0.10506274057161136
NLTLPPVI	8	Unmodified	_NLTLPPVI_					0	0	0			REV__ENSG00000136051|ENST00000332180|WASHC4	REV__ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.7518005371094	2	433.770929	865.527304	0.44844	0.00019452	2.8522	0.0012372	3.3006	0.0014317	433.77147909678445	19.712	0.27125	19.712	19.511	19.782	0					7	5	2	0	0	0	0.027866	1	426	426		47.916	0	1	8154.5	+		54886	23619	38318	38381	60169	60169					0.08916160908222537
NLTLRDLS	8	Unmodified	_NLTLRDLS_					0	0	0		nc|ENSG00000079435|Q05469-2|LIPE;ENSG00000079435|ENST00000244289|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2637939453125	2	466.263999	930.513445	-0.21159	-9.8656E-05	-1.2489	-0.00058231	-1.4605	-0.00068097	466.2634922538418	37.863	2.0014	37.684	37.363	39.365	-0.17929					143	55	5	0	0	0	0.50717	2	3054	3054;3088		84.916	8.1414	1	78690000			54887	1665	38319	38382	60170;60171	60170					0.04540883409140406
NLTMLPRLV	9	Unmodified	_NLTMLPRLV_					0	0	0		ENSG00000179240|ENST00000529331|GVQW3	ENSG00000179240|ENST00000529331|GVQW3	ENSG00000179240|ENST00000529331|GVQW3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3135375976562	2	528.815344	1055.61614	-1.475	-0.00078001	-2.0129	-0.0010644	-3.4879	-0.0018444	529.316083380002	62.698	0.73538	62.459	62.325	63.06	-0.23926					49	19	4	0	0	0	0.70186	1	7285	7285		45.952	1.8352	1	1946100			54888	8882	38320	38383	60172	60172					0.09055252876237319
NLTQFTLAD	9	Unmodified	_NLTQFTLAD_					0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3055419921875	2	511.761289	1021.50803	-0.41024	-0.00020994	1.0969	0.00056134	0.68664	0.0003514	511.76127865624306	66.02	0.42421	66.05	65.812	66.237	0.030106					23	10	4	0	0	0	0.024374	1	7743	7743		19.104	0	1	531970	+		54889	24858	38321	38384	60173	60173					-0.0018684017333043812
NLTRLIPK	8	Unmodified	_NLTRLIPK_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2698059082031	2	477.808377	953.6022	-0.50007	-0.00023894	0.21678	0.00010358	-0.28329	-0.00013536	477.80827544899694	34.693	0.90751	34.743	34.557	35.465	0.050255					28	23	2	0	0	0	0.027866	1	2668	2668		24.203	0	1	206380	+		54890	25831	38322	38385	60174	60174					0.12354343439460536
NLTSHEPE	8	Unmodified	_NLTSHEPE_					0	0	0			REV__ENST00000533268.1_1_11:100207665-100208043:+|nuORF	REV__ENST00000533268.1_1_11:100207665-100208043:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.29461669921875	2	463.714339	925.414125	-0.6196	-0.00028732	2.1871	0.0010142	1.5675	0.00072686	463.7141631120222	48.35	0.17585	48.252	48.15	48.326	-0.097553					6	4	2	0	0	0	0.027866	1	4782	4782		17.365	0	1	68359	+		54891	34598	38323	38386	60175	60175					-0.0515655927562193
NLTVEGTGNP	10	Unmodified	_NLTVEGTGNP_					0	0	0		nc|ENSG00000188833|Q5MY95-2|ENTPD8;ENSG00000188833|ENST00000371506|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.801025390625	2	501.248546	1000.48254	0.1205	6.0403E-05	3.3326	0.0016705	3.4531	0.0017309	501.25013033879503	46.872	0.70057	46.872	46.515	47.216	0					37	18	3	0	0	0	0.03519	1	4646	4646		46.457	3.5925	1	524490			54892	9759	38324	38387	60176	60176					-0.01768314695743811
NLTWGEPCAF	10	Unmodified	_NLTWGEPCAF_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.2872924804688	2	569.255317	1136.49608	0.31079	0.00017692	1.7843	0.0010157	2.0951	0.0011926	569.2559653604253	69.271	0.86756	69.028	68.79	69.657	-0.24277					33	20	3	0	0	0	0.03519	1	8005	8005		29.15	13.508	1	472010	+		54893	19868	38325	38388	60177	60177					-0.06670780188187564
NLTWGEPCAF	10	Unmodified	_NLTWGEPCAF_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.255317	1136.49608	-0.85062	-0.00048422	0.35088	0.00019974	-0.49974	-0.00028448	569.2550562221417	69.183	0.70622	69.183	68.717	69.423	0	0.10204	-0.0022033	NaN	29.15	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369000	+		54894	19868	38325	38388							-0.06670780188187564
NLTWGEPCAF	10	Unmodified	_NLTWGEPCAF_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.255317	1136.49608	0.26356	0.00015004	2.0436	0.0011633	2.3071	0.0013134	569.2567047146395	69.302	0.673	69.009	68.713	69.386	-0.29292	-0.072065	-0.00027612	NaN	29.15	26	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247220	+		54895	19868	38325	38388							-0.06670780188187564
NLTWGEPCAF	10	Unmodified	_NLTWGEPCAF_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.255317	1136.49608	-1.0607	-0.00060378	-0.01813	-1.0321E-05	-1.0788	-0.0006141	569.2550262021477	69.195	0.84056	69.21	68.83	69.67	0.015121	0.12849	-0.0026234	NaN	29.15	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286870	+		54896	19868	38325	38388							-0.06670780188187564
NLVAEMAVAG	10	Unmodified	_NLVAEMAVAG_					0	0	0			REV__ENST00000449367.5_1_7:100883509-100888309:-|nuORF	REV__ENST00000449367.5_1_7:100883509-100888309:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7515869140625	2	487.75241	973.490267	-1.0928	-0.00053302	0.88149	0.00042995	-0.21132	-0.00010307	487.7525506667395	75.238	0.70407	75.238	74.955	75.659	0					41	18	3	0	0	0	0.55353	1	9236	9236		82.241	4.9229	1	1586000	+		54897	32676	38326	38389	60178	60178					0.0024612130016521405
NLVAKSTT	8	Unmodified	_NLVAKSTT_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.2386474609375	2	417.239993	832.465432	0.94253	0.00039326	-2.981	-0.0012438	-2.0385	-0.00085055	417.23864032569355	87.794	1.1495	87.813	87.303	88.453	0.018555					48	27	2	0	0	0	1.0106	1	10976	10976		35.618	1.4457	1	2790100			54898	7732	38327	38390	60179	60179					0.04249809489101608
NLVAKSTT	8	Unmodified	_NLVAKSTT_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.2391662597656	2	417.239993	832.465432	0.31115	0.00012982	-2.4499	-0.0010222	-2.1387	-0.00089236	417.23890073393284	87.912	0.94289	87.775	87.372	88.315	-0.13744					37	22	2	0	0	0	1.043	1	10706	10706		30.504	2.2494	1	1894000			54899	7732	38327	38390	60180	60180					0.04249809489101608
NLVDKVEF	8	Unmodified	_NLVDKVEF_					0	0	0			REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2608337402344	2	482.260925	962.507297	0.27703	0.0001336	0.3803	0.0001834	0.65733	0.000317	482.2609708296094	66.437	1.2662	66.437	66.224	67.49	0					57	35	3	0	0	0	0.38451	1	7896	7896		99.375	14.015	1	3901000	+		54900	24169	38328	38391	60181	60181					0.024543651776298248
NLVDLILQL	9	Unmodified	_NLVDLILQL_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.820556640625	2	520.82115	1039.62775	-0.29122	-0.00015167	0.81045	0.0004221	0.51923	0.00027043	520.8214048946902	100.28	0.50852	100.28	100.07	100.57	0					26	11	4	0	0	0	0.2101	1	12848	12848		87.696	5.4559	1	401950	+		54901	23271	38329	38392	60182	60182					0.10951773171245804
NLVDLILQL	9	Unmodified	_NLVDLILQL_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.8203125	2	520.82115	1039.62775	0.071733	3.736E-05	0.58166	0.00030294	0.65339	0.0003403	520.8212318302302	100.42	0.44234	100.41	100.14	100.58	-0.0050888					23	10	3	0	0	0	0.19099	2	12779	12767;12779		90.37	5.209	1	330170	+		54902	23271	38329	38392	60183;60184	60184					0.10951773171245804
NLVDSYVAII	10	Unmodified	_NLVDSYVAII_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;ENST00000590806.5_1_19:10922561-10941720:+|nuORF;ENST00000593203.1_1_19:10934344-10943016:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.8298950195312	2	553.808239	1105.60193	0.046571	2.5792E-05	0.47203	0.00026141	0.5186	0.00028721	554.3101346113807	89.249	0.16976	89.249	89.186	89.355	0					5	3	2	0	0	0	0.03519	1	11265	11265		56.721	12.604	1	23888			54903	1675	38330	38393	60185	60185					0.05334878928965736
NLVEKAQIA	9	Unmodified	_NLVEKAQIA_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2875671386719	2	493.287474	984.560395	0.38789	0.00019134	-1.4931	-0.00073654	-1.1052	-0.0005452	493.2868186624525	22.464	1.2377	22.262	21.999	23.237	-0.20199					83	26	5	0	0	0	0.75397	1	803	803		42.396	3.1433	1	15279000	+		54904	22790	38331	38394	60186	60186					0.06749742960289495
NLVESKTG	8	Unmodified	_NLVESKTG_					0	0	0			REV__nc|ENSG00000162971|A2RUC4-2|TYW5	REV__nc|ENSG00000162971|A2RUC4-2|TYW5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.2187805175781	2	424.229625	846.444697	0.30162	0.00012795	3.8921	0.0016512	4.1938	0.0017791	424.23091766139635	99.308	0.25178	99.139	99.029	99.281	-0.16862					6	5	2	0	0	0	0.027866	1	12303	12303		49.442	0	1	46232	+		54905	25514	38332	38395	60187	60187					0.01533219109444417
NLVFALGVVSA	11	Unmodified	_NLVFALGVVSA_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	0.9728	2	10547	10547;10560		42.864	7.7122	1	4888900	+		54906	23436	38333	38396	60188;60189	60188					0.08222889028479585
NLVFALGVVSA	11	Unmodified	_NLVFALGVVSA_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0017	1	10544	10544		36.447	0	1	5204600	+		54907	23436	38333	38396	60190	60190					0.08222889028479585
NLVFLARSV	9	Unmodified	_NLVFLARSV_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8038024902344	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	0.87448	1	10585	10585		34.173	1.3601	1	2572600			54908	15001	38334	38397	60191	60191					0.08902039576855714
NLVGKPSH	8	Unmodified	_NLVGKPSH_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2563781738281	2	426.240327	850.466101	-0.14168	-6.0391E-05	0.73492	0.00031325	0.59324	0.00025286	426.24057491974105	35.424	0.95316	35.468	35.05	36.003	0.04406					38	24	2	0	0	0	0.027866	1	2672	2672		30.504	0	1	369380			54909	1021	38335	38398	60192	60192					0.0348864892880556
NLVHAIESLP	10	Unmodified	_NLVHAIESLP_					0	0	0		OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant;nc|ENSG00000144645|Q9BXB5-2|OSBPL10;ENSG00000144645|ENST00000396556|OSBPL10	OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	OSBPL10|p.E585Rfs*40|1|0.14|ENSG00000144645|chr3:31670957-31670957|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2760009765625	2	546.806031	1091.59751	-0.75197	-0.00041118	2.9929	0.0016365	2.2409	0.0012254	547.30933166556	73.23	0.23724	73.04	72.886	73.123	-0.19026					7	5	2	0	0	0	0.03519	1	8605	8605		19.104	0	1	37897			54910	5756	38336	38399	60193	60193					0.05537414506034111
NLVHKFIE	8	Unmodified	_NLVHKFIE_					0	0	0		ENST00000229329.6_1_12:22208105-22208192:+|nuORF	ENST00000229329.6_1_12:22208105-22208192:+|nuORF	ENST00000229329.6_1_12:22208105-22208192:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.2824401855469	2	500.284734	998.554916	-0.090688	-4.537E-05	-3.866	-0.0019341	-3.9567	-0.0019795	500.28273666409433	102.65	0.55813	102.48	102.2	102.76	-0.1704					36	12	4	0	0	0	1.0133	1	12748	12748		35.201	3.2459	1	562690			54911	11228	38337	38400	60194	60194					0.05558064168474175
NLVKESGT	8	Unmodified	_NLVKESGT_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.2187805175781	2	424.229625	846.444697	0.28806	0.0001222	-0.20277	-8.602E-05	0.08529	3.6183E-05	424.229615813144	99.151	0.44184	98.982	98.761	99.202	-0.16863					11	9	2	0	0	0	0.027866	1	12303	12303		49.442	0	1	58717			54912	3949	38338	38401	60195	60195					0.015332191094330483
NLVLGNVNVT	10	Unmodified	_NLVLGNVNVT_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3048706054688	2	521.798206	1041.58186	-0.89491	-0.00046696	0.91738	0.00047869	0.022473	1.1726E-05	521.7987308412725	47.59	0.81631	47.59	47.289	48.105	0					65	24	4	0	0	0	0.03519	1	4741	4741		54.776	12.38	1	11112000			54913	9742	38339	38402	60196	60196					0.06273127989015848
NLVLKGVPIL	10	Unmodified	_NLVLKGVPIL_					0	0	0			REV__ENSG00000121691|ENST00000241052|CAT	REV__ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7138671875	2	533.35516	1064.69577	0.22636	0.00012073	-0.62716	-0.0003345	-0.4008	-0.00021377	533.8564242917797	86.202	0.39305	86.06	85.841	86.234	-0.14218					14	8	2	0	0	0	0.03519	1	10464	10464		5.9211	0	1	45801	+		54914	22602	38340	38403	60197	60197					0.16600642821890688
NLVLMKTF	8	Unmodified	_NLVLMKTF_					0	0	0		ENST00000283206.8_1_2:112821810-112824567:+|nuORF	ENST00000283206.8_1_2:112821810-112824567:+|nuORF	ENST00000283206.8_1_2:112821810-112824567:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2785949707031	2	483.278063	964.541574	0.10143	4.9018E-05	1.7267	0.00083448	1.8281	0.00088349	483.2789944074833	94.34	1.8423	94.192	93.392	95.234	-0.14771					94	42	4	0	0	0	1.0574	1	11656	11656		24.203	0	1	1094700			54915	11734	38341	38404	60198	60198					0.057884900648673465
NLVMEKLK	8	Unmodified	_NLVMEKLK_					0	0	0		nc|ENSG00000130167|Q9UKR8-3|TSPAN16;ENSG00000130167|ENST00000590327|TSPAN16;nc|ENSG00000130167|Q9UKR8|TSPAN16	nc|ENSG00000130167|Q9UKR8-3|TSPAN16	nc|ENSG00000130167|Q9UKR8-3|TSPAN16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7902526855469	2	487.788795	973.563038	0.29152	0.0001422	3.4181	0.0016673	3.7097	0.0018095	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	1.0516	1	10415	10415		29.15	2.3535	1	2091900			54916	4391	38342	38405	60199	60199					0.07519875093601058
NLVNKISR	8	Unmodified	_NLVNKISR_					0	0	0			REV__ENST00000379715.9_1_6:8080041-8080113:-|nuORF	REV__ENST00000379715.9_1_6:8080041-8080113:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.28790283203125	2	472.287808	942.561064	-0.48925	-0.00023107	0.00055468	2.6197E-07	-0.4887	-0.00023081	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	0.95679	2	11647	11599;11647		44.117	5.3107	1	45907000	+		54917	31445	38343	38406	60200;60201	60201					0.0874858239999412
NLVNRKNSL	9	Unmodified	_NLVNRKNSL_					0	0	0			REV__ENSG00000197296|ENST00000396825|FITM2	REV__ENSG00000197296|ENST00000396825|FITM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.3276977539062	2	529.309272	1056.60399	0.42674	0.00022588	2.9512	0.0015621	3.3779	0.001788	529.3090201385967	19.503	0.59591	19.303	19.057	19.653	-0.2001					19	11	3	0	0	0	0.024487	1	449	449		31.955	6.5047	1	132980	+		54918	28287	38344	38407	60202	60202					0.07795352457424087
NLVNRKNSL	9	Unmodified	_NLVNRKNSL_					0	0	0			REV__ENSG00000197296|ENST00000396825|FITM2	REV__ENSG00000197296|ENST00000396825|FITM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.309272	1056.60399	0.15326	8.1122E-05	0.44422	0.00023513	0.59748	0.00031625	529.3089211358812	19.372	0.39616	19.211	19.034	19.43	-0.1608	-0.045958	-0.0014459	NaN	24.203	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153630	+		54919	28287	38344	38407							0.07795352457424087
NLVPSPDLD	9	Unmodified	_NLVPSPDLD_					0	0	0		ZNF358|p.D505N|1|0.27|ENSG00000198816|chr19:7520755-7520755|G/A|missense_variant	ZNF358|p.D505N|1|0.27|ENSG00000198816|chr19:7520755-7520755|G/A|missense_variant	ZNF358|p.D505N|1|0.27|ENSG00000198816|chr19:7520755-7520755|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.24981689453125	2	485.248015	968.481476	-0.71242	-0.0003457	-4.4077	-0.0021388	-5.1201	-0.0024845	485.2457280622112	79.781	0.29294	79.802	79.645	79.938	0.021446					8	6	2	0	0	0	0.024506	1	9845	9845		30.504	12.179	1	46332			54920	38187	38345	38408	60203	60203					-0.004025290646723079
NLVPVPITNA	10	Unmodified	_NLVPVPITNA_					0	0	0		ORM2|p.Q84Lfs*11|1|0.11|ENSG00000228278|chr9:114330565-114330566|-/TACC|frameshift_variant;ENSG00000229314|ENST00000259396|ORM1;ENSG00000228278|ENST00000431067|ORM2	ORM2|p.Q84Lfs*11|1|0.11|ENSG00000228278|chr9:114330565-114330566|-/TACC|frameshift_variant	ORM2|p.Q84Lfs*11|1|0.11|ENSG00000228278|chr9:114330565-114330566|-/TACC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2640991210938	2	519.303124	1036.5917	0.068014	3.532E-05	-1.2327	-0.00064015	-1.1647	-0.00060483	519.3023095786889	55.652	1.1428	55.652	55.5	56.643	0					60	31	4	0	0	0	0.03519	1	6260	6260		24.519	0.31644	1	730110			54921	10675	38346	38409	60204	60204					0.07486315994378856
NLVQFGVIAV	10	Unmodified	_NLVQFGVIAV_					0	0	0			REV__TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	REV__TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.278076171875	2	530.313492	1058.61243	-0.42036	-0.00022292	0.46418	0.00024616	0.04382	2.3239E-05	530.3134753065756	70.01	0.50026	69.76	69.441	69.942	-0.25063					27	11	3	0	0	0	0.03519	1	8107	8107		20.947	0	1	605620	+		54922	28385	38347	38410	60205	60205					0.08546906374067476
NLVQFGVIAV	10	Unmodified	_NLVQFGVIAV_					0	0	0			REV__TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	REV__TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.313492	1058.61243	-0.47895	-0.00025399	0.37596	0.00019938	-0.10298	-5.4613E-05	530.313487526876	70.077	0.42108	69.81	69.578	69.999	-0.26725	0.043027	0.00020966	NaN	20.947	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	709870	+		54923	28385	38347	38410							0.08546906374067476
NLVQFGVIAV	10	Unmodified	_NLVQFGVIAV_					0	0	0			REV__TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	REV__TOR4A|p.T419Rfs*2|1|0.29|ENSG00000198113|chr9:137279942-137279942|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.313492	1058.61243	0.053138	2.818E-05	-0.32645	-0.00017312	-0.27332	-0.00014494	530.3131828558968	69.954	0.45554	69.732	69.474	69.929	-0.22246	-0.035525	-0.00053534	NaN	20.947	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608070	+		54924	28385	38347	38410							0.08546906374067476
NLVQIGAPLP	10	Unmodified	_NLVQIGAPLP_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.302734375	2	511.305667	1020.59678	-0.48698	-0.000249	0.31428	0.00016069	-0.17271	-8.8305E-05	511.3056890932278	66.193	0.7009	65.948	65.649	66.35	-0.24567					40	17	4	0	0	0	0.03519	1	7597	7597		27.882	6.9353	1	1294800			54925	18202	38348	38411	60206	60206					0.08730619856999056
NLVQKEREL	9	Unmodified	_NLVQKEREL_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.8240356445312	2	564.822212	1127.62987	0.12303	6.9488E-05	4.1136	0.0023234	4.2366	0.0023929	564.8242226178919	102.17	0.8551	102	101.74	102.59	-0.17178					52	20	3	0	0	0	0.85329	1	12669	12669		35.618	4.0885	1	133500			54926	8016	38349	38412	60207	60207					0.07116201909047959
NLVQRGLN	8	Unmodified	_NLVQRGLN_					0	0	0		ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2646179199219	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.94517	1	10080	10080		45.952	10.334	1	2903100			54927	14228	38350	38413	60208	60208					0.05435722848858404
NLVQRGLN	8	Unmodified	_NLVQRGLN_					0	0	0		ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2649230957031	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.93274	1	10010	10010		47.916	7.343	1	2920900			54928	14228	38350	38413	60209	60209					0.05435722848858404
NLVQRGLN	8	Unmodified	_NLVQRGLN_					0	0	0		ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	ENST00000433510.2_1_17:46713640-46724167:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2643737792969	2	457.264333	912.514114	0.383	0.00017513	-0.35618	-0.00016287	0.026819	1.2263E-05	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	1.043	1	9712	9712		30.504	1.3541	1	4505400			54929	14228	38350	38413	60210	60210					0.05435722848858404
NLVSERLPIVR	11	Unmodified	_NLVSERLPIVR_					0	0	0			REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.5977478027344	3	432.597983	1294.77212	0.87253	0.00037745	-1.5681	-0.00067836	-0.69558	-0.00030091	432.59715866374853	105.58	0.78917	105.42	104.98	105.77	-0.16282					65	27	5	0	0	0	1.0557	1	13149	13149		21.032	1.7696	1	1089400	+		54930	36547	38351	38414	60211	60211					0.13652414651210165
NLVSFLETV	9	Unmodified	_NLVSFLETV_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2818908691406	2	511.281857	1020.54916	-0.47105	-0.00024084	0.39515	0.00020203	-0.075898	-3.8805E-05	511.2819751753754	95.946	1.5373	95.946	95.476	97.014	0					88	35	3	0	0	0	0.013887	3	12220	12207;12220;12233		195.81	80.355	1	1883100			54931	4313	38352	38415	60212;60213;60214	60213					0.039709208661633966
NLVSFLETV	9	Unmodified	_NLVSFLETV_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.281982421875	2	511.281857	1020.54916	0.36483	0.00018653	-0.45998	-0.00023518	-0.095149	-4.8648E-05	511.28151250443614	95.716	1.4447	95.719	95.389	96.834	0.0033798					95	33	3	0	0	0	0.018156	3	12162	12162;12173;12189		215.39	82.528	1	1848000			54932	4313	38352	38415	60215;60216;60217	60215					0.039709208661633966
NLVSFLETV	9	Unmodified	_NLVSFLETV_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2822265625	2	511.281857	1020.54916	0.52252	0.00026715	-0.5557	-0.00028412	-0.033186	-1.6968E-05	511.2814522662601	96.001	1.581	96.003	95.524	97.105	0.0020752					100	36	3	0	0	0	0.013065	3	12155	12143;12155;12168		171.53	78.336	1	1879200			54933	4313	38352	38415	60218;60219;60220	60219					0.039709208661633966
NLVSFLETV	9	Unmodified	_NLVSFLETV_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2816467285156	2	511.281857	1020.54916	0.12263	6.2698E-05	0.72246	0.00036938	0.84509	0.00043208	511.2817965188904	95.793	1.3241	95.656	95.199	96.523	-0.13689					52	30	3	0	0	0	0.091713	1	11805	11805		113.41	31.107	1	900220			54934	4313	38352	38415	60221	60221					0.039709208661633966
NLVSFLETV	9	Unmodified	_NLVSFLETV_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.28167724609375	2	511.281857	1020.54916	0.54624	0.00027928	0.4283	0.00021898	0.97454	0.00049826	511.28153082070344	95.786	1.1493	95.664	95.247	96.396	-0.12251					56	26	4	0	0	0	0.043667	1	11826	11826		131.03	32.402	1	1356500			54935	4313	38352	38415	60222	60222					0.039709208661633966
NLVSFLETV	9	Unmodified	_NLVSFLETV_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2816162109375	2	511.281857	1020.54916	-0.3502	-0.00017905	1.96	0.0010021	1.6098	0.00082305	511.2819404755423	95.92	1.2417	95.763	95.269	96.511	-0.15646					70	28	4	0	0	0	0.016811	1	11812	11812		201.49	75.674	1	1018700			54936	4313	38352	38415	60223	60223					0.039709208661633966
NLVSHVLTRR	10	Unmodified	_NLVSHVLTRR_					0	0	0			REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8565673828125	2	597.856921	1193.69929	-1.6739	-0.0010008	0.44776	0.00026769	-1.2261	-0.00073306	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.0344	1	11823	11823		41.427	4.9799	1	4454900	+		54937	37626	38353	38416	60224	60224					0.11018705648439209
NLVSHVLTRR	10	Unmodified	_NLVSHVLTRR_					0	0	0			REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8562622070312	2	597.856921	1193.69929	-1.0361	-0.00061944	-0.20101	-0.00012018	-1.2371	-0.00073961	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.1081	1	11753	11753		31.634	2.4642	1	4942300	+		54938	37626	38353	38416	60225	60225					0.11018705648439209
NLVSHVLTRR	10	Unmodified	_NLVSHVLTRR_					0	0	0			REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8567504882812	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.1081	1	11524	11524		31.634	1.3165	1	5655800	+		54939	37626	38353	38416	60226	60226					0.11018705648439209
NLVSHVLTRR	10	Unmodified	_NLVSHVLTRR_					0	0	0			REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|3|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8563842773438	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.1277	2	11478	11406;11478		28.081	1.3886	1	5598500	+		54940	37626	38353	38416	60227;60228	60228					0.11018705648439209
NLVSKALELF	10	Unmodified	_NLVSKALELF_					0	0	0			REV__RYR2|p.E4123K|1|0.44|ENSG00000198626|chr1:237784079-237784079|G/A|missense_variant	REV__RYR2|p.E4123K|1|0.44|ENSG00000198626|chr1:237784079-237784079|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.331882	1132.64921	-0.10765	-6.1074E-05	-3.625	-0.0020566	-3.7326	-0.0021176	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.0236	2	10930	10930;10996		42.864	3.6343	1	5896300	+		54941	37455	38354	38417	60229;60230	60229					0.08819158199935373
NLVSNVLSR	9	Unmodified	_NLVSNVLSR_					0	0	0			REV__SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|4|1|sense	REV__SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|4|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2906799316406	2	501.290548	1000.56654	-0.51649	-0.00025891	-0.28986	-0.0001453	-0.80636	-0.00040422	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.67244	2	10714	10624;10714		47.96	5.5634	1	8326900	+		54942	37631	38355	38418	60231;60232	60232					0.06628261191804086
NLVSRLHLKN	10	Unmodified	_NLVSRLHLKN_					0	0	0			REV__ENSG00000135476|ENST00000257934|ESPL1	REV__ENSG00000135476|ENST00000257934|ESPL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.35888671875	2	597.359296	1192.70404	-0.42325	-0.00025283	-0.64435	-0.00038491	-1.0676	-0.00063774	597.3586803270889	98.534	1.7211	98.544	98.105	99.827	0.010239					111	39	4	0	0	0	1.1179	1	12532	12532		19.997	1.6724	1	2936700	+		54943	23549	38356	38419	60233	60233					0.11539589791232174
NLVSSHAH	8	Unmodified	_NLVSSHAH_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7205810546875	2	432.719759	863.424964	-0.36721	-0.0001589	2.0753	0.00089801	1.7081	0.00073911	432.72054382328594	30.728	1.6273	30.55	30.243	31.871	-0.17817					75	39	3	0	0	0	0.97924	1	1991	1991		40.573	1.5511	1	1735400	+		54944	23259	38357	38420	60234	60234					-0.012211121106702194
NLVTKTKT	8	Unmodified	_NLVTKTKT_					0	0	0		ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20;nc|ENSG00000140153|Q8TBZ3-7|WDR20;ENST00000299135.6_1_14:102606435-102676214:+|nuORF;nc|ENSG00000140153|Q8TBZ3-4|WDR20;nc|ENSG00000140153|Q8TBZ3-5|WDR20;nc|ENSG00000140153|Q8TBZ3-6|WDR20	ENSG00000140153|ENST00000342702|WDR20	ENSG00000140153|ENST00000342702|WDR20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24261474609375	2	452.776742	903.538931	0.485	0.0002196	-4.2911	-0.0019429	-3.8061	-0.0017233	452.7750058681372	53.854	0.32631	53.854	53.545	53.872	0					13	8	2	0	0	0	0.027866	1	5804	5804		38.806	0	1	284570			54945	5394	38358	38421	60235	60235					0.08330357931561139
NLVTLLQM	8	Unmodified	_NLVTLLQM_					0	0	0		ENSG00000145428|ENST00000347063|RNF175	ENSG00000145428|ENST00000347063|RNF175	ENSG00000145428|ENST00000347063|RNF175	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.29864501953125	2	466.267696	930.520839	0.10291	4.7986E-05	2.906	0.001355	3.0089	0.001403	466.268891878348	18.182	0.29737	17.978	17.865	18.162	-0.20436					7	5	2	0	0	0	0.027866	1	274	274		37.159	8.0096	1	25320			54946	5815	38359	38422	60236	60236					0.052798996852061464
NLVVIPKS	8	Unmodified	_NLVVIPKS_					0	0	0		ENSG00000085662|ENST00000285930|AKR1B1;ENST00000467251.1_1_7:134129988-134132130:-|nuORF	ENSG00000085662|ENST00000285930|AKR1B1	ENSG00000085662|ENST00000285930|AKR1B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2525634765625	2	435.276378	868.538203	0.12981	5.6505E-05	0.22059	9.6017E-05	0.3504	0.00015252	435.27626831701656	78.184	0.6553	78.184	77.876	78.531	0					28	15	3	0	0	0	0.027866	1	9672	9672		45.972	0	1	462650			54947	1796	38360	38423	60237	60237					0.09867563282534775
NLVVPFQGK	9	Unmodified	_NLVVPFQGK_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2911071777344	2	501.292559	1000.57057	-0.32298	-0.00016191	-3.2597	-0.0016341	-3.5827	-0.001796	501.2905862857756	88.352	1.9534	88.181	87.855	89.808	-0.17053					95	46	4	0	0	0	0.94809	1	10745	10745		29.15	0.89528	1	1265500			54948	1828	38361	38424	60238	60238					0.07030350685533904
NLVYIYNT	8	Unmodified	_NLVYIYNT_					0	0	0			REV__nc|ENSG00000105976|P08581-2|MET	REV__nc|ENSG00000105976|P08581-2|MET	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.31854248046875	2	500.260925	998.507297	0.55316	0.00027673	0.66208	0.00033121	1.2152	0.00060794	500.76321364026535	96.794	0.22079	96.802	96.619	96.839	0.0089111					6	4	2	0	0	0	0.027866	1	12287	12287		40.573	21.213	1	41837	+		54949	21583	38362	38425	60239	60239					0.007983651776157785
NLVYKKTG	8	Unmodified	_NLVYKKTG_					0	0	0			REV__ENSG00000197601|ENST00000354817|FAR1	REV__ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7734069824219	2	461.77146	921.528367	0.74969	0.00034618	3.7023	0.0017096	4.452	0.0020558	461.77298981619765	102.05	0.83698	102.05	101.71	102.55	-0.0054474					44	18	4	0	0	0	0.95679	1	13028	13028		44.117	10.601	1	1118500	+		54950	28327	38363	38426	60240	60240					0.0644637527714167
NLWFSYID	8	Unmodified	_NLWFSYID_					0	0	0			REV__nc|ENSG00000166197|Q14978-3|NOLC1	REV__nc|ENSG00000166197|Q14978-3|NOLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297607421875	2	529.2531	1056.49165	-0.58836	-0.00031139	3.9888	0.0021111	3.4004	0.0017997	529.2550763837208	52.923	2.3569	52.776	52.021	54.378	-0.14723					107	63	2	0	0	0	0.027866	1	5563	5563		65.803	0	1	346540	+		54951	36883	38364	38427	60241	60241					-0.034339213394332546
NLWLDEWWHMT	11	Unmodified	_NLWLDEWWHMT_					0	0	0			REV__ENPEP|p.D407H|1|0.16|ENSG00000138792|chr4:110510269-110510269|G/C|missense_variant	REV__ENPEP|p.D407H|1|0.16|ENSG00000138792|chr4:110510269-110510269|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7892761230469	3	510.899333	1529.67617	0.31232	0.00015957	-2.0406	-0.0010425	-1.7283	-0.00088298	511.2319788925449	85.62	0.29156	85.482	85.368	85.66	-0.13752					9	6	2	0	0	0	0.024851	1	10362	10362		19.263	9.1588	1	33886	+		54952	19750	38365	38428	60242	60242					-0.06748101251196204
NLWNDIEP	8	Unmodified	_NLWNDIEP_					0	0	0			REV__ENSG00000166153|ENST00000550587|DEPDC4	REV__ENSG00000166153|ENST00000550587|DEPDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.280029296875	2	500.740357	999.46616	0.35808	0.0001793	3.9588	0.0019823	4.3169	0.0021616	500.7421259402346	90.752	0.66708	90.763	90.407	91.074	0.011276					34	15	3	0	0	0	0.027866	1	11390	11390		26.693	0	1	693530	+		54953	25980	38366	38429	60243	60243					-0.033593958618666875
NLWPCKQTYG	10	Unmodified	_NLWPCKQTYG_					0	0	0			REV__ENST00000326237.3_1_3:10044409-10044886:+|nuORF	REV__ENST00000326237.3_1_3:10044409-10044886:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5599365234375	3	403.862219	1208.56483	0.5784	0.0002336	2.5964	0.0010486	3.1748	0.0012822	403.8633717882368	33.423	0.5805	33.223	32.937	33.517	-0.20019					21	14	2	0	0	0	0.03519	1	2406	2406		24.232	0	1	225750	+		54954	30401	38367	38430	60244	60244					-0.031111158884641554
NLWQINSH	8	Unmodified	_NLWQINSH_					0	0	0		ENST00000442011.6_1_5:135369517-135379779:+|nuORF	ENST00000442011.6_1_5:135369517-135379779:+|nuORF	ENST00000442011.6_1_5:135369517-135379779:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81085205078125	2	506.253966	1010.49338	-0.49222	-0.00024919	-3.0498	-0.001544	-3.542	-0.0017932	506.25086245883614	56.645	0.1741	56.645	56.571	56.745	0					5	4	2	0	0	0	0.027866	1	6335	6335		44.117	0	1	43211			54955	14374	38368	38431	60245	60245					-0.01144867530808824
NLWVDAQSTC	10	Unmodified	_NLWVDAQSTC_					0	0	0		WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;WFIKKN1|p.E63Gfs*155|1|0.17|ENSG00000127578|chr16:632598-632598|A/-|frameshift_variant;ENSG00000127578|ENST00000319070|WFIKKN1	WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	WFIKKN2|p.C395Afs*78|1|0.24|ENSG00000173714|chr17:50840464-50840464|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.29345703125	2	568.755681	1135.49681	-0.31861	-0.00018121	-2.7422	-0.0015597	-3.0609	-0.0017409	568.7540245881097	45.059	0.95148	44.806	44.508	45.459	-0.25252					58	25	4	0	0	0	0.03519	1	4265	4265		47.657	0	1	3212000			54956	8404	38369	38432	60246	60246					-0.06551985539113048
NLWVKGLQ	8	Unmodified	_NLWVKGLQ_					0	0	0		ENST00000522421.1_1_2:220250088-220250490:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	ENST00000522421.1_1_2:220250088-220250490:-|nuORF	ENST00000522421.1_1_2:220250088-220250490:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2555847167969	2	479.279452	956.544351	-0.37404	-0.00017927	0.84574	0.00040534	0.47169	0.00022607	479.27963576010677	53.392	0.94744	53.487	53.127	54.075	0.095665					44	26	2	0	0	0	0.027866	1	5690	5690		31.955	13.63	1	366140			54957	14670	38370	38433	60247	60247					0.0643408151404401
NLYEEALL	8	Unmodified	_NLYEEALL_					0	0	0		ENST00000506991.1_1_4:139402677-139402851:-|nuORF	ENST00000506991.1_1_4:139402677-139402851:-|nuORF	ENST00000506991.1_1_4:139402677-139402851:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.77130126953125	2	482.752933	963.491313	0.48389	0.0002336	-0.25983	-0.00012543	0.22407	0.00010817	482.75364423658493	95.879	0.25664	95.881	95.696	95.953	0.0020752					6	5	2	0	0	0	0.027866	1	12131	12131		40.573	0	1	32919			54958	15751	38371	38434	60248	60248					0.008106589407248066
NLYEGQITV	9	Unmodified	_NLYEGQITV_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7694702148438	2	518.769114	1035.52368	-0.42322	-0.00021955	0.60136	0.00031196	0.17813	9.241E-05	518.7693397405603	66.531	0.65041	66.283	65.861	66.511	-0.24839					57	17	4	0	0	0	0.014738	2	7623	7612;7623		163.15	53.031	1	5409900			54959	7759	38372	38435	60249;60250	60250					0.007334463437018712
NLYEGQITV	9	Unmodified	_NLYEGQITV_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.769287109375	2	518.769114	1035.52368	-0.38477	-0.00019961	0.39806	0.0002065	0.013286	6.8926E-06	518.7692382491019	66.551	0.62075	66.327	65.986	66.607	-0.22374					40	17	3	0	0	0	0.014738	2	7633	7615;7633		163.15	53.031	1	5739200			54960	7759	38372	38435	60251;60252	60252					0.007334463437018712
NLYEGQITV	9	Unmodified	_NLYEGQITV_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.7698974609375	2	518.769114	1035.52368	-0.32027	-0.00016615	0.34594	0.00017946	0.025668	1.3316E-05	518.7692258126373	66.505	0.65435	66.259	65.891	66.545	-0.24517					51	18	4	0	0	0	0.014738	2	7626	7614;7626		200.16	69.126	1	5358000			54961	7759	38372	38435	60253;60254	60254					0.007334463437018712
NLYEGQITV	9	Unmodified	_NLYEGQITV_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.769114	1035.52368	0.077665	4.029E-05	0.25895	0.00013433	0.33661	0.00017462	518.7693471039332	66.127	0.4243	66.127	65.799	66.224	0	-0.098987	-0.00013829	NaN	163.15	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375030			54962	7759	38372	38435							0.007334463437018712
NLYEGQITV	9	Unmodified	_NLYEGQITV_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.769114	1035.52368	-0.31726	-0.00016458	0.34506	0.00017901	0.027806	1.4425E-05	519.2708861793406	66.436	0.57885	66.155	65.672	66.251	-0.28149	-0.071646	-4.8937E-05	NaN	163.15	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298020			54963	7759	38372	38435							0.007334463437018712
NLYEGQITV	9	Unmodified	_NLYEGQITV_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.769114	1035.52368	-0.53936	-0.00027981	-0.75765	-0.00039305	-1.297	-0.00067285	518.7686702760238	66.177	0.3461	66.207	65.89	66.237	0.030106	-0.01915	-0.001193	NaN	163.15	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327910			54964	7759	38372	38435							0.007334463437018712
NLYELIIN	8	Unmodified	_NLYELIIN_					0	0	0			REV__nc|ENSG00000104231|Q8TCF1-3|ZFAND1	REV__nc|ENSG00000104231|Q8TCF1-3|ZFAND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2977294921875	2	496.276575	990.538597	0.63474	0.00031501	1.0585	0.00052532	1.6933	0.00084032	496.2769113895049	55.096	0.70089	55.096	54.689	55.39	0					31	19	2	0	0	0	0.027866	1	6022	6022		12.959	0	1	377140	+		54965	21427	38373	38436	60255	60255					0.042949382117285495
NLYGVAFLL	9	Unmodified	_NLYGVAFLL_					0	0	0		ENST00000341119.9_1_7:87479196-87479262:-|nuORF	ENST00000341119.9_1_7:87479196-87479262:-|nuORF	ENST00000341119.9_1_7:87479196-87479262:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.245849609375	2	505.289485	1008.56442	0.16055	8.1126E-05	-0.69576	-0.00035156	-0.53521	-0.00027043	505.2889314100326	56.824	0.65386	56.6	56.307	56.961	-0.2248					30	16	3	0	0	0	0.024183	1	6132	6132		50.025	3.2581	1	313940			54966	12484	38374	38437	60256	60256					0.060478324539985806
NLYIVSLSV	9	Unmodified	_NLYIVSLSV_					0	0	0		ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7667541503906	2	504.292225	1006.5699	-1.1622	-0.00058608	-0.42719	-0.00021543	-1.5894	-0.00080151	504.29206253330904	65.707	0.45676	65.494	65.296	65.753	-0.21327					14	10	2	0	0	0	0.024495	1	7535	7535		14.137	0	1	122080			54967	9905	38375	38438	60257	60257					0.0668751124579785
NLYLGSAR	8	Unmodified	_NLYLGSAR_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.23529052734375	2	447.245609	892.476666	1.1457	0.00051241	-1.1688	-0.00052273	-0.023074	-1.032E-05	447.2450676245292	37.243	0.76859	37.243	36.966	37.735	0					43	20	3	0	0	0	0.027866	1	3087	3087		24.203	0	1	725160			54968	4468	38376	38439	60258	60258					0.02612631583235725
NLYPETFAL	9	Unmodified	_NLYPETFAL_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2738037109375	2	534.274032	1066.53351	-1.1634	-0.00062159	1.8584	0.0009929	0.69498	0.00037131	534.2745840978821	83.419	0.94434	83.419	82.878	83.823	0					47	21	3	0	0	0	0.26966	1	10433	10433		79.713	10.926	1	961100			54969	3705	38377	38440	60259	60259					0.0029063434908493946
NLYPETFAL	9	Unmodified	_NLYPETFAL_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2742919921875	2	534.274032	1066.53351	-0.29771	-0.00015906	0.6602	0.00035273	0.36249	0.00019367	534.2740790958121	83.45	1.0694	83.36	82.787	83.856	-0.090454					44	24	3	0	0	0	0.057894	1	10405	10405		125.81	48.496	1	996850			54970	3705	38377	38440	60260	60260					0.0029063434908493946
NLYPETFAL	9	Unmodified	_NLYPETFAL_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2734375	2	534.274032	1066.53351	-1.2226	-0.00065319	1.2869	0.00068755	0.064302	3.4355E-05	534.2745735500022	83.316	0.94159	83.343	82.96	83.901	0.026558					57	21	4	0	0	0	0.14024	1	10351	10351		101.6	30.305	1	1156700			54971	3705	38377	38440	60261	60261					0.0029063434908493946
NLYPETFAL	9	Unmodified	_NLYPETFAL_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.274032	1066.53351	0.42197	0.00022545	0.16764	8.9567E-05	0.58961	0.00031501	534.2741301193198	83.47	0.47412	83.258	82.919	83.393	-0.21159	-0.034585	-0.00071071	NaN	125.81	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144310			54972	3705	38377	38440							0.0029063434908493946
NLYPETFAL	9	Unmodified	_NLYPETFAL_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.274032	1066.53351	0.036303	1.9396E-05	-0.27145	-0.00014503	-0.23515	-0.00012563	534.2740852172683	83.372	0.50449	83.203	82.905	83.409	-0.16915	-0.090096	-0.0011799	NaN	125.81	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190230			54973	3705	38377	38440							0.0029063434908493946
NLYPETFAL	9	Unmodified	_NLYPETFAL_					0	0	0		ENSG00000118816|ENST00000237654|CCNI;nc|ENSG00000118816|Q14094-2|CCNI	ENSG00000118816|ENST00000237654|CCNI	ENSG00000118816|ENST00000237654|CCNI	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.274032	1066.53351	-0.36461	-0.0001948	0.77278	0.00041288	0.40816	0.00021807	534.2744082761938	83.313	0.59612	83.175	82.91	83.506	-0.1386	-0.11827	-6.4096E-05	NaN	125.81	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179170			54974	3705	38377	38440							0.0029063434908493946
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8087768554688	2	540.808042	1079.60153	0.50413	0.00027264	-0.5644	-0.00030523	-0.060272	-3.2595E-05	540.8076334980944	63.625	0.82862	63.625	63.126	63.954	0					67	22	4	0	0	0	0.016542	3	7458	7446;7458;7470		154.12	65.705	1	9951900			54975	5231	38378	38441	60262;60263;60264	60263					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8085327148438	2	540.808042	1079.60153	-0.46331	-0.00025056	0.16306	8.8182E-05	-0.30025	-0.00016238	540.8080557001923	63.866	0.72295	63.615	63.264	63.987	-0.25141					70	19	5	0	0	0	0.016542	4	7460	7447;7460;7472;7484		154.12	57.928	1	9242200			54976	5231	38378	38441	60265;60266;60267;60268	60266					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.80810546875	2	540.808042	1079.60153	0.96169	0.00052009	-1.2741	-0.00068905	-0.31243	-0.00016897	540.8072521267386	63.629	0.71649	63.683	63.338	64.054	0.054104					65	19	4	0	0	0	0.014034	4	7368	7368;7380;7392;7405		166.68	67.298	1	9206200			54977	5231	38378	38441	60269;60270;60271;60272	60269					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.808042	1079.60153	-0.4654	-0.00025169	-1.5801	-0.00085452	-2.0455	-0.0011062	540.8072332875129	63.86	0.93438	63.633	63.015	63.949	-0.22773	-0.0053728	-0.0013082	NaN	166.68	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129800			54978	5231	38378	38441							0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.808042	1079.60153	-0.34262	-0.00018529	-1.5252	-0.00082484	-1.8678	-0.0010101	540.8071979047987	63.819	0.81402	63.626	63.224	64.038	-0.19243	-0.011764	-0.0012488	NaN	166.68	55	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1202400			54979	5231	38378	38441							0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.808042	1079.60153	-0.71565	-0.00038703	-1.0248	-0.00055425	-1.7405	-0.00094128	540.8075067026431	63.905	0.75819	63.647	63.239	63.997	-0.25824	0.008996	-0.00070761	NaN	166.68	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1052100			54980	5231	38378	38441							0.06491503999745873
NLYRDVMV	8	Unmodified	_NLYRDVMV_					0	0	0		ENSG00000142556|ENST00000270649|ZNF614;nc|ENSG00000142556|Q8N883-2|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.78961181640625	2	505.260402	1008.50625	-0.70493	-0.00035618	-0.16509	-8.3414E-05	-0.87002	-0.00043959	505.2601874467465	28.404	0.92019	28.252	27.649	28.57	-0.15195					44	22	3	0	0	0	0.027866	1	1618	1618		30.504	0	1	545660			54981	5570	38379	38442	60273	60273					0.0023382753706755466
NLYVPVYGAS	10	Unmodified	_NLYVPVYGAS_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2456665039062	2	541.779482	1081.54441	-0.73105	-0.00039607	1.0336	0.00055998	0.30255	0.00016391	541.7799372475254	89.898	0.58565	89.77	89.5	90.085	-0.12774					26	13	2	0	0	0	0.03519	1	10961	10961		32.812	10.853	1	614160	+		54982	22204	38380	38443	60274	60274					0.0069003672338112665
NLYVYVAGGL	10	Unmodified	_NLYVYVAGGL_					0	0	0			REV__nc|ENSG00000135424|Q13683-9|ITGA7	REV__nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8302612304688	2	534.78985	1067.56515	0.1731	9.2573E-05	0.22623	0.00012099	0.39933	0.00021356	534.7898366383503	63.516	0.68704	63.516	63.23	63.917	0					33	18	2	0	0	0	0.03519	1	7454	7454		51.335	3.6781	1	1892500	+		54983	23542	38381	38444	60275	60275					0.034066271030496864
NLYWNVKP	8	Unmodified	_NLYWNVKP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8274536132812	2	517.276909	1032.53927	-0.37789	-0.00019547	-3.3637	-0.00174	-3.7416	-0.0019354	517.2749652583809	35.304	0.93511	35.088	34.671	35.606	-0.21556					35	23	2	0	0	0	0.027866	1	2627	2627		30.504	6.3009	1	166710	+		54984	25017;36804	38382	38445	60276	60276					0.024297776514231373
NLYWNVKP	8	Unmodified	_NLYWNVKP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.276909	1032.53927	-1.022	-0.00052864	-1.8406	-0.00095212	-2.8626	-0.0014808	517.2752916073883	35.297	1.0852	35.297	34.944	36.029	0	0.13899	0.0011604	NaN	30.504	61	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507540	+		54985	25017;36804	38382	38445							0.024297776514231373
NLYWNVKP	8	Unmodified	_NLYWNVKP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.276909	1032.53927	-1.0848	-0.00056117	-2.7177	-0.0014058	-3.8026	-0.001967	517.2754110847153	35.137	0.80116	35.115	34.828	35.629	-0.021767	-0.042666	0.00025301	NaN	30.504	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470520	+		54986	25017;36804	38382	38445							0.024297776514231373
NLYWNVKP	8	Unmodified	_NLYWNVKP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.276909	1032.53927	-0.90742	-0.00046939	-3.0194	-0.0015618	-3.9268	-0.0020312	517.2754640299794	35.215	0.77216	35.259	35.05	35.822	0.044056	0.10128	-5.9034E-05	NaN	30.504	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425200	+		54987	25017;36804	38382	38445							0.024297776514231373
NMALAPYPH	9	Unmodified	_NMALAPYPH_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.30389404296875	2	507.247295	1012.48004	-0.040378	-2.0482E-05	2.9431	0.0014929	2.9028	0.0014724	507.2485238639658	41.488	0.39618	41.488	41.326	41.722	0					13	10	2	0	0	0	0.024293	1	3713	3713		42.474	13.325	1	56599	+		54988	24832	38383	38446	60277	60277					-0.0257044163441833
NMAPSTPLL	9	Unmodified	_NMAPSTPLL_					0	0	0		ENST00000473499.1_1_3:150264547-150270228:+|nuORF;ENST00000463863.5_1_3:150264547-150276361:+|nuORF	ENST00000473499.1_1_3:150264547-150270228:+|nuORF	ENST00000473499.1_1_3:150264547-150270228:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2948303222656	2	472.249503	942.484453	0.72567	0.0003427	-3.6613	-0.0017291	-2.9357	-0.0013864	472.24768429152454	55.055	1.3877	55.055	54.076	55.464	0					75	39	3	0	0	0	0.021513	1	6082	6082		82.241	27.476	1	1105100			54989	14746	38384	38447	60278	60278					0.010910227885005952
NMATKIIELTK	11	Unmodified	_NMATKIIELTK_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.70404052734375	3	421.244329	1260.71116	-0.04082	-1.7195E-05	-0.46459	-0.0001957	-0.5054	-0.0002129	421.2435657119878	33.752	0.40062	33.526	33.277	33.678	-0.22651					11	9	2	0	0	0	0.024726	1	2424	2424		20.315	0	1	56833	+		54990	28084	38385	38448	60279	60279					0.09123141556733572
NMDPRNLT	8	Unmodified	_NMDPRNLT_					0	0	0		ENST00000434835.2_1_3:135870419-135870488:-|nuORF	ENST00000434835.2_1_3:135870419-135870488:-|nuORF	ENST00000434835.2_1_3:135870419-135870488:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7691345214844	2	480.732009	959.449465	0.28102	0.00013509	0.96814	0.00046542	1.2492	0.00060051	480.7320002120045	52.098	0.87989	52.098	51.633	52.513	0					37	23	2	0	0	0	0.027866	1	5513	5513		71.296	27.179	1	132280			54991	14253	38386	38449	60280	60280					-0.031882200194672805
NMDPRNLT	8	Unmodified	_NMDPRNLT_					0	0	0		ENST00000434835.2_1_3:135870419-135870488:-|nuORF	ENST00000434835.2_1_3:135870419-135870488:-|nuORF	ENST00000434835.2_1_3:135870419-135870488:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.732009	959.449465	0.093429	4.4914E-05	-4.1088	-0.0019752	-4.0154	-0.0019303	480.7295593532137	52.49	0.24192	52.3	52.188	52.43	-0.18982	0.16849	-0.0042196	NaN	71.296	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37515			54992	14253	38386	38449							-0.031882200194672805
NMDTGEDTL	9	Unmodified	_NMDTGEDTL_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.70855712890625	2	498.202947	994.391341	-0.12214	-6.0852E-05	-1.8249	-0.00090916	-1.947	-0.00097001	498.20194057559416	34.333	0.73695	34.109	33.803	34.54	-0.22412					43	18	3	0	0	0	0.024292	1	2528	2528		58.782	16.386	1	1577900	+		54993	36925	38387	38450	60281	60281					-0.10607946455388628
NMEILEEQM	9	Unmodified	_NMEILEEQM_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8109741210938	2	568.75175	1135.48895	-0.50555	-0.00028753	-0.36865	-0.00020967	-0.8742	-0.0004972	568.7515936359831	69.663	0.5845	69.396	69.247	69.831	-0.26725					16	13	2	0	0	0	0.0242	1	8067	8067		69.628	12.907	1	235470			54994	8901;16105	38388	38451	60282	60282					-0.07337880850900547
NMFIISLLV	9	Unmodified	_NMFIISLLV_					0	0	0			REV__ENST00000487463.1_1_X:54838631-54839708:+|nuORF	REV__ENST00000487463.1_1_X:54838631-54839708:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7892456054688	2	525.306821	1048.59909	0.10476	5.5031E-05	3.3764	0.0017737	3.4812	0.0018287	525.8094443301727	76.18	0.24583	76.012	75.892	76.138	-0.16854					6	5	2	0	0	0	0.024466	1	9034	9034		24.519	0	1	22873	+		54995	21302	38389	38452	60283	60283					0.07673332270451283
NMFVLDHQN	9	Unmodified	_NMFVLDHQN_					0	0	0		ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	ENST00000502926.1_2_5:140806427-140807822:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.3216552734375	2	559.258391	1116.50223	-0.19467	-0.00010887	4.093	0.0022891	3.8984	0.0021802	559.2608248314408	67.902	0.23959	67.614	67.47	67.71	-0.28834					7	5	2	0	0	0	0.024374	1	8075	8075		32.812	0	1	57511			54996	15680	38390	38453	60284	60284					-0.0513626195663619
NMHVVKKR	8	Unmodified	_NMHVVKKR_					0	0	0			REV__ENSG00000179580|ENST00000569714|RNF151	REV__ENSG00000179580|ENST00000569714|RNF151	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.29107666015625	2	506.297653	1010.58075	-1.2373	-0.00062643	2.3796	0.0012048	1.1423	0.00057836	506.7996528409536	21.064	0.2969	20.851	20.723	21.02	-0.2128					6	5	2	0	0	0	0.027866	1	594	594		38.806	0	1	9648.5	+		54997	27277	38391	38454	60285	60285					0.07588635139109101
NMKEKDNETT	10	Unmodified	_NMKEKDNETT_					0	0	0		ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE	ENSG00000138778|ENST00000265148|CENPE	ENSG00000138778|ENST00000265148|CENPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	403.852049	1208.53432	0.52595	0.00021241	1.4824	0.00059865	2.0083	0.00081106	403.85261212420943	32.431	0.51411	32.194	31.824	32.339	-0.23666					16	11	2	0	0	0	0.03519	1	2188	2188		5.6988	0	1	87530			54998	5284	38392	38455	60286	60286					-0.06160939064170634
NMKKADLPE	9	Unmodified	_NMKKADLPE_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-6|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8191528320312	2	523.270967	1044.52738	0.42933	0.00022466	-3.8214	-0.0019996	-3.392	-0.001775	523.2688808164422	54.464	0.62156	54.562	54.294	54.916	0.098011					42	17	3	0	0	0	0.0242	1	5852	5852		79.713	24.936	1	1199500			54999	103	38393	38456	60287	60287					0.006897928459238756
NMKKADLPE	9	Unmodified	_NMKKADLPE_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-6|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.270967	1044.52738	-1.0738	-0.00056189	-2.3455	-0.0012273	-3.4193	-0.0017892	523.2694429261176	54.695	0.65527	54.695	54.428	55.083	0	0.062051	0.00086271	NaN	79.713	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1043700			55000	103	38393	38456							0.006897928459238756
NMKKADLPE	9	Unmodified	_NMKKADLPE_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-6|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.270967	1044.52738	-0.30822	-0.00016128	-2.9057	-0.0015205	-3.2139	-0.0016817	523.2692362731173	54.793	0.59123	54.642	54.442	55.033	-0.15036	0.0091506	0.00027642	NaN	79.713	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1019400			55001	103	38393	38456							0.006897928459238756
NMKKTHGEP	9	Unmodified	_NMKKTHGEP_					0	0	0			REV__nc|ENSG00000163607|Q8N3Z3-2|GTPBP8	REV__nc|ENSG00000163607|Q8N3Z3-2|GTPBP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2897338867188	2	521.260933	1040.50731	-0.12859	-6.7027E-05	-0.051596	-2.6895E-05	-0.18018	-9.3923E-05	521.2607490575558	37.399	0.43827	37.335	36.941	37.379	-0.063385					14	11	2	0	0	0	0.024477	1	2986	2986		20.947	0	1	56873	+		55002	36853	38394	38457	60288	60288					-0.011319580940153173
NMKREVDS	8	Unmodified	_NMKREVDS_					0	0	0		ENST00000609089.1_1_2:226563264-226563324:+|nuORF	ENST00000609089.1_1_2:226563264-226563324:+|nuORF	ENST00000609089.1_1_2:226563264-226563324:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2657775878906	2	489.737291	977.460029	0.085552	4.1898E-05	-0.73035	-0.00035768	-0.6448	-0.00031578	489.7357027546021	55.914	0.39967	55.698	55.409	55.808	-0.21607					17	10	2	0	0	0	0.027866	1	6015	6015		58.782	0	1	290250			55003	17601	38395	38458	60289	60289					-0.029602373650277514
NMKRILPK	8	Unmodified	_NMKRILPK_					0	0	0			REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7922668457031	2	500.310229	998.605906	0.18055	9.0332E-05	-4.4272	-0.002215	-4.2466	-0.0021246	500.3079241698471	52.757	0.33922	52.849	52.674	53.013	0.091938					14	8	2	0	0	0	0.027866	1	5581	5581		12.207	0	1	358000	+		55004	25005	38396	38459	60290	60290					0.10654689941679862
NMKRILPK	8	Unmodified	_NMKRILPK_					0	0	0			REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.310229	998.605906	-0.28331	-0.00014174	-3.5694	-0.0017858	-3.8527	-0.0019275	500.3084215252836	53.009	0.30317	52.862	52.682	52.985	-0.14723	0.0062425	0.00046895	NaN	7.1934	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352260	+		55005	25005	38396	38459							0.10654689941679862
NMKSMCMIN	9	2 Oxidation (M)	_NM(Oxidation (M))KSMCM(Oxidation (M))IN_		NM(1)KSM(0.23)CM(0.77)IN		NM(46)KSM(-5.2)CM(5.2)IN	0	0	2			REV__ENST00000515408.5_1_5:112349733-112349877:+|nuORF	REV__ENST00000515408.5_1_5:112349733-112349877:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7806396484375	2	552.221248	1102.42794	-0.56833	-0.00031384	3.1413	0.0017347	2.573	0.0014209	552.2227978390226	45.429	0.78922	45.218	44.871	45.66	-0.21109					48	22	3	0	0	0	0.024017	1	4321	4321		56.434	17.628	3	673070	+		55006	34197	38397	38460	60291	60291		931;932			-0.11917432426321284
NMKVSRPVM	9	2 Oxidation (M)	_NM(Oxidation (M))KVSRPVM(Oxidation (M))_		NM(1)KVSRPVM(1)		NM(51)KVSRPVM(51)	0	0	2		ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.2777709960938	2	547.278269	1092.54198	-1.2559	-0.0006873	-2.0732	-0.0011346	-3.329	-0.0018219	547.2771449491971	30.547	4.1876	30.621	29.523	33.711	0.074314					244	105	4	0	0	0	0.62163	1	1950	1950		51.335	7.2187	1	4201100			55007	6435	38398	38461	60292	60292		267;268			-0.0005845827756729705
NMLDVNGLFTL	11	Unmodified	_NMLDVNGLFTL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	618.818115234375	2	618.818281	1235.62201	-0.62816	-0.00038872	-0.063443	-3.9259E-05	-0.6916	-0.00042797	618.8186884766451	102.06	0.3434	101.94	101.76	102.1	-0.12666					15	9	2	0	0	0	0.70094	1	12687	12687		63.694	27.247	1	107350			55008	6036	38399	38462	60293	60293					0.013623065972751647
NMLDVNGLFTL	11	Unmodified	_NMLDVNGLFTL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	618.8184814453125	2	618.818281	1235.62201	0.19395	0.00012002	0.063127	3.9064E-05	0.25708	0.00015909	618.8184079186913	102.14	0.34485	101.97	101.82	102.17	-0.17178					14	8	2	0	0	0	1.0074	1	12680	12680		35.178	6.0082	1	84042			55009	6036	38399	38462	60294	60294					0.013623065972751647
NMLDVNGLFTL	11	Unmodified	_NMLDVNGLFTL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	618.818281	1235.62201	0.15697	9.7137E-05	-0.94957	-0.00058761	-0.7926	-0.00049047	618.8180120113067	102.05	0.35225	101.92	101.76	102.11	-0.12931	-0.021147	-0.00075094	NaN	63.694	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59744			55010	6036	38399	38462							0.013623065972751647
NMLKNIELF	9	Unmodified	_NMLKNIELF_					0	0	0		ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	ENSG00000110906|ENST00000228495|KCTD10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3235473632812	2	561.30481	1120.59507	0.059988	3.3672E-05	0.82817	0.00046486	0.88816	0.00049853	561.3052209183955	67.624	0.61052	67.648	67.513	68.123	0.023911					23	15	2	0	0	0	0.024457	1	8021	8021		37.159	2.9866	1	228080			55011	3074	38400	38463	60295	60295					0.03959242776704741
NMLLIQFTL	9	Unmodified	_NMLLIQFTL_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.326904296875	2	546.809728	1091.6049	0.22391	0.00012243	-2.8727	-0.0015708	-2.6488	-0.0014484	546.8079446430667	79.994	0.75034	79.748	79.447	80.197	-0.2465					36	17	3	0	0	0	0.024319	1	9554	9554		47.657	20.964	1	1146600	+		55012	19690	38401	38464	60296	60296					0.06276430782122588
NMLNRILVA	9	Unmodified	_NMLNRILVA_					0	0	0			REV__ENST00000261296.6_1_13:95230368-95235415:-|nuORF	REV__ENST00000261296.6_1_13:95230368-95235415:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.8162841796875	2	522.305144	1042.59573	-0.4032	-0.0002106	-2.4223	-0.0012652	-2.8255	-0.0014758	522.3034422195161	65.194	0.56542	64.941	64.702	65.268	-0.25362					25	13	3	0	0	0	0.024354	1	7410	7410		47.916	3.5384	1	200410	+		55013	29618	38402	38465	60297	60297					0.0761408221644615
NMLPDLNPD	9	Unmodified	_NMLPDLNPD_					0	0	0			REV__ENSG00000162300|ENST00000294258|ZFPL1	REV__ENSG00000162300|ENST00000294258|ZFPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3340454101562	2	514.739499	1027.46445	-0.037527	-1.9317E-05	-0.23673	-0.00012185	-0.27425	-0.00014117	514.7392465208297	49.627	0.51741	49.627	49.324	49.842	0					28	13	3	0	0	0	0.020937	1	5139	5139		67.494	1.6905	1	339340	+		55014	25426	38403	38466	60298	60298					-0.04818772942121541
NMLYVKSKLL	10	Unmodified	_NMLYVKSKLL_					0	0	0		ENST00000261845.6_1_15:52338817-52338892:+|nuORF	ENST00000261845.6_1_15:52338817-52338892:+|nuORF	ENST00000261845.6_1_15:52338817-52338892:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.57183837890625	3	403.573898	1207.69987	-0.75971	-0.0003066	-4.3331	-0.0017487	-5.0928	-0.0020553	403.57214569371973	42.804	1.3312	42.578	42.26	43.591	-0.22597					97	35	4	0	0	0	1.037	1	3858	3858		41.08	8.3295	1	4823100			55015	11483	38404	38467	60299	60299					0.10432364253301785
NMNDKLGPE	9	Unmodified	_NMNDKLGPE_					0	0	0			REV__ENSG00000137501|ENST00000359152|SYTL2	REV__ENSG00000137501|ENST00000359152|SYTL2	MSMS	OPSCC_39_ClassI_Rep-1	1	509.2345275878906	2	509.237124	1016.45969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105	1	105	104.5	105.5	0								0	0	0	0.63578	1	13476	13476		34.173	0	1		+		55016	23763	38405	38468	60300	60300					-0.04787657084887087
NMNEGIFFQY	10	Unmodified	_NMNEGIFFQY_					0	0	0			REV__ENSG00000133112|ENST00000530705|TPT1	REV__ENSG00000133112|ENST00000530705|TPT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.70404052734375	3	421.521863	1261.54376	-0.66158	-0.00027887	-2.2624	-0.00095365	-2.924	-0.0012325	421.5207980657383	34.02	2.6338	33.844	32.829	35.463	-0.17557					144	66	3	0	0	0	0.03519	1	2387	2387		43.651	22.619	1	756240	+		55017	23352	38406	38469	60301	60301					-0.07655125987957945
NMNSAISVTM	10	Unmodified	_NMNSAISVTM_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2551879882812	2	534.246634	1066.47872	-0.25751	-0.00013758	-2.4277	-0.001297	-2.6852	-0.0014346	534.244121096008	52.641	0.45045	52.732	52.526	52.976	0.091942					20	11	3	0	0	0	0.03519	1	5562	5562		19.997	0	1	223860			55018	1870;18103	38407	38470	60302	60302					-0.05186443785487427
NMPKKPVL	8	Unmodified	_NMPKKPVL_					0	0	0		nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2;nc|ENSG00000136108|Q8WWK9-4|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.7781982421875	2	463.778231	925.541908	-0.092952	-4.3109E-05	0.20341	9.4337E-05	0.11046	5.1228E-05	463.77820265015555	32.786	0.88854	32.554	32.303	33.191	-0.23245					41	21	3	0	0	0	0.96719	1	2294	2294		42.474	1.6963	1	1067100			55019	4983	38408	38471	60303	60303					0.07615909784738051
NMPKKPVL	8	Unmodified	_NMPKKPVL_					0	0	0		nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2;nc|ENSG00000136108|Q8WWK9-4|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-6|CKAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.7786560058594	2	463.778231	925.541908	-0.41261	-0.00019136	0.12623	5.8543E-05	-0.28638	-0.00013282	463.7783064659941	32.784	0.84089	32.618	32.315	33.156	-0.16565					54	20	4	0	0	0	0.88442	1	2275	2275		52.299	4.3836	1	1111100			55020	4983	38408	38471	60304	60304					0.07615909784738051
NMQQTVQHSLT	11	Unmodified	_NMQQTVQHSLT_					0	0	0			REV__ENST00000256999.6_1_11:49204701-49207262:-|nuORF	REV__ENST00000256999.6_1_11:49204701-49207262:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.22674560546875	3	429.543438	1285.60848	-0.039017	-1.6759E-05	-2.7057	-0.0011622	-2.7447	-0.001179	429.54213716139066	45.176	0.70084	44.965	44.715	45.416	-0.21109					42	19	3	0	0	0	0.024789	1	4273	4273		15.921	0	1	879040	+		55021	29560	38409	38472	60305	60305					-0.02289551181979732
NMRLRGDKF	9	Unmodified	_NMRLRGDKF_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-5|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.80322265625	2	568.8033	1135.59205	-0.15097	-8.587E-05	0.049241	2.8009E-05	-0.10173	-5.7862E-05	568.8029989221487	97.288	0.94388	97.127	96.773	97.716	-0.16106					50	20	3	0	0	0	0.67687	1	12021	12021		47.657	1.6851	1	215280	+		55022	22257	38410	38473	60306	60306					0.02967412442603745
NMSGQNYLY	9	Unmodified	_NMSGQNYLY_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8002319335938	2	545.237124	1088.45969	-0.23269	-0.00012687	-1.8007	-0.00098179	-2.0334	-0.0011087	545.2362353034598	50.46	0.47848	50.279	50.055	50.534	-0.18071					16	12	2	0	0	0	0.024438	1	5161	5161		36.447	0	1	233130	+		55023	28271	38411	38474	60307	60307					-0.08099657084881073
NMTPCQLNV	9	Unmodified	_NMTPCQLNV_					0	0	0		nc|ENSG00000111291|Q9NZD1-2|GPRC5D;nc|ENSG00000111291|Q9NZD1-3|GPRC5D;ENSG00000111291|ENST00000228887|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7493896484375	2	510.23607	1018.45759	-1.2322	-0.00062869	2.4654	0.0012579	1.2333	0.00062926	510.2372184641973	29.813	0.24441	29.891	29.763	30.007	0.078344					7	5	2	0	0	0	0.023635	1	1805	1805		76.774	10.345	1	22785			55024	3102	38412	38475	60308	60308					-0.050904090943390656
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(120)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7567443847656	2	510.755149	1019.49575	-0.75469	-0.00038546	0.00059216	3.0245E-07	-0.7541	-0.00038516	510.755082122776	34.913	0.97874	34.913	34.552	35.531	0					41	25	2	0	0	0	0.062622	4	2623	2623;2635;2649;2659		124.08	46.703	1	2781200			55025	10190	38413	38476	60309;60310;60311;60312	60309		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(170)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	OPSCC_39_ClassI_Rep-1	1	510.755126953125	2	510.755149	1019.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.426	1	37.426	36.926	37.926	0								0	0	0	0.0074507	1	3051	3051		171.53	38.774	1				55026	10190	38413	38476	60313	60313		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(150)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	OPSCC_39_ClassI_Rep-1	1	510.75482177734375	2	510.755149	1019.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.498	1	37.498	36.998	37.998	0								0	0	0	0.014365	1	3063	3063		148.99	34.092	1				55027	10190	38413	38476	60314	60314		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(160)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7546081542969	2	510.755149	1019.49575	-0.65082	-0.00033241	-0.20349	-0.00010393	-0.85431	-0.00043634	510.7549706946982	34.753	1.1071	34.731	34.319	35.426	-0.021763					46	28	2	0	0	0	0.015752	4	2620	2583;2594;2606;2620		158.07	45.825	1	2974500			55028	10190	38413	38476	60315;60316;60317;60318	60318		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(140)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	OPSCC_39_ClassI_Rep-2	2	510.7548522949219	2	510.755149	1019.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.489	1	37.425	36.925	37.925	-0.063385								0	0	0	0.014478	1	3047	3047		139.97	41.388	1				55029	10190	38413	38476	60319	60319		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(160)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7552795410156	2	510.755149	1019.49575	-0.86424	-0.00044142	0.26298	0.00013432	-0.60126	-0.0003071	510.7551245057217	34.693	1.0606	34.743	34.404	35.465	0.050255					63	27	3	0	0	0	0.014918	3	2570	2539;2558;2570		162.25	63.67	1	2675300			55030	10190	38413	38476	60320;60321;60322	60322		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(150)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	OPSCC_39_ClassI_Rep-3	3	510.7550048828125	2	510.755149	1019.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.43	1	37.463	36.963	37.963	0.032269								0	0	0	0.014413	1	2996	2996		145.16	41.099	1				55031	10190	38413	38476	60323	60323		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(180)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	OPSCC_39_ClassI_Rep-3	3	510.75482177734375	2	510.755149	1019.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.499	1	37.531	37.031	38.031	0.032269								0	0	0	0.00483	1	3007	3007		176.09	38.024	1				55032	10190	38413	38476	60324	60324		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_		NM(1)VAKVDEV		NM(190)VAKVDEV	0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MSMS	OPSCC_39_ClassI_Rep-3	3	510.7551574707031	2	510.755149	1019.49575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.581	1	37.613	37.113	38.113	0.032269								0	0	0	0.0017757	1	3020	3020		185.55	70.655	1				55033	10190	38413	38476	60325	60325		428			-0.013221999080201385
NMVAKVDEV	9	Oxidation (M)	_NM(Oxidation (M))VAKVDEV_					0	0	1		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.755149	1019.49575	-0.54278	-0.00027723	1.0515	0.00053707	0.50874	0.00025984	510.75531578703436	34.813	0.78217	34.626	34.241	35.023	-0.18675	-0.11532	0.0010091	NaN	162.25	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349840			55034	10190	38413	38476				428			-0.013221999080201385
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.75714111328125	2	502.757692	1003.50083	-0.81711	-0.00041081	-0.13539	-6.8069E-05	-0.9525	-0.00047887	502.75747678786274	43.455	0.72284	43.455	43.113	43.836	0					50	19	4	0	0	0	0.014918	3	4076	4063;4076;4089		162.25	35.677	1	8735400			55035	10190	38413	38477	60326;60327;60328	60327					-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7571105957031	2	502.757692	1003.50083	-0.84701	-0.00042584	0.084645	4.2556E-05	-0.76236	-0.00038328	502.7575386813545	43.624	0.67899	43.479	43.169	43.848	-0.14471					49	18	5	0	0	0	0.020687	4	4089	4067;4077;4089;4102		148.99	39.508	1	8026500			55036	10190	38413	38477	60329;60330;60331;60332	60331					-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7566223144531	2	502.757692	1003.50083	0.19499	9.803E-05	-1.2972	-0.00065218	-1.1022	-0.00055415	502.75698415829316	43.509	0.68789	43.54	43.229	43.917	0.030827					30	18	2	0	0	0	0.027092	3	4025	4014;4025;4038		143.89	39.14	1	8404300			55037	10190	38413	38477	60333;60334;60335	60334					-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.757692	1003.50083	-0.93432	-0.00046974	0.99462	0.00050005	0.060298	3.0315E-05	502.7581009366903	43.792	0.66467	43.547	43.275	43.94	-0.2444	0.026011	0.0015339	NaN	162.25	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254200			55038	10190	38413	38477							-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.757692	1003.50083	-1.1983	-0.00060247	1.0163	0.00051094	-0.18205	-9.1527E-05	502.75812262296944	43.804	0.65587	43.585	43.316	43.972	-0.21939	0.063487	0.0015556	NaN	162.25	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1365800			55039	10190	38413	38477							-0.0007789604541130757
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB;ENSG00000114054|ENST00000251654|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.2654418945312	2	514.265684	1026.51682	-0.43875	-0.00022564	-0.067187	-3.4552E-05	-0.50594	-0.00026019	514.2655572935281	67.141	0.71946	66.859	66.555	67.274	-0.28148					31	17	2	0	0	0	0.39228	1	7974	7974		66.429	20.477	1	1781600			55040	18185	38414	38478	60336	60336					0.004618101914957151
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB;ENSG00000114054|ENST00000251654|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.2657470703125	2	514.265684	1026.51682	-0.63311	-0.00032559	0.29084	0.00014957	-0.34227	-0.00017602	514.2656973158855	66.859	0.62694	66.883	66.643	67.27	0.023911					32	14	3	0	0	0	0.27161	2	7892	7881;7892		79.451	10.664	1	1489500			55041	18185	38414	38478	60337;60338	60338					0.004618101914957151
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB;ENSG00000114054|ENST00000251654|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.2652587890625	2	514.265684	1026.51682	0.16635	8.5547E-05	-0.55993	-0.00028795	-0.39358	-0.0002024	514.2651955359594	67.131	0.74667	66.883	66.715	67.462	-0.24839					32	17	3	0	0	0	0.17845	1	7710	7710		93.143	38.367	1	992180			55042	18185	38414	38478	60339	60339					0.004618101914957151
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB;ENSG00000114054|ENST00000251654|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.264404296875	2	514.265684	1026.51682	-0.43018	-0.00022123	-0.034364	-1.7672E-05	-0.46454	-0.0002389	514.2655182699752	67.129	0.68345	66.905	66.714	67.397	-0.22374					27	16	2	0	0	0	0.56934	1	7723	7723		54.776	3.4409	1	1069100			55043	18185	38414	38478	60340	60340					0.004618101914957151
NMVDIIHSV	9	Unmodified	_NMVDIIHSV_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB;ENSG00000114054|ENST00000251654|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.26416015625	2	514.265684	1026.51682	-0.43767	-0.00022508	0.19819	0.00010192	-0.23948	-0.00012316	514.2655093692101	67.097	0.77634	66.851	66.683	67.459	-0.24517					32	18	3	0	0	0	0.15388	1	7712	7712		98.582	41.861	1	1367400			55044	18185	38414	38478	60341	60341					0.004618101914957151
NMVEGTAYLS	10	Unmodified	_NMVEGTAYLS_					0	0	0		ENSG00000242110|ENST00000335606|AMACR;nc|ENSG00000242110|Q9UHK6-5|AMACR	ENSG00000242110|ENST00000335606|AMACR	ENSG00000242110|ENST00000335606|AMACR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3138427734375	2	542.752607	1083.49066	-0.76462	-0.000415	-2.5059	-0.0013601	-3.2705	-0.0017751	542.7509674187972	69.022	1.3145	69.022	68.6	69.915	0					89	33	4	0	0	0	0.03519	1	8315	8315		26.693	0	1	1676100			55045	10791	38415	38479	60342	60342					-0.04774503770636329
NMVIFRNVV	9	Unmodified	_NMVIFRNVV_					0	0	0		ENSG00000243480|ENST00000414303|AMY2A;CON__Q3MHH8	ENSG00000243480|ENST00000414303|AMY2A	ENSG00000243480|ENST00000414303|AMY2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.7869873046875	2	546.305144	1090.59573	-1.4731	-0.00080475	-4.2261	-0.0023087	-5.6992	-0.0031135	546.302951024443	83.723	0.3471	83.749	83.598	83.945	0.026558					12	7	2	0	0	0	0.024381	1	10384	10384		55.504	13.108	1	66514		+	55046	552	38416	38480	60343	60343					0.05406082216450159
NMVKPRSLL	9	Unmodified	_NMVKPRSLL_					0	0	0		ENST00000434116.6_1_15:65903979-65904138:+|nuORF	ENST00000434116.6_1_15:65903979-65904138:+|nuORF	ENST00000434116.6_1_15:65903979-65904138:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2418823242188	2	529.312969	1056.61138	-1.6658	-0.00088171	-3.1272	-0.0016553	-4.793	-0.002537	529.3121875007835	43.973	0.11191	43.973	43.91	44.022	0					4	2	2	0	0	0	0.024457	1	4155	4155		37.159	16.212	1	55780			55047	14239	38417	38481	60344	60344					0.08534368733512565
NMVKPRSLL	9	Unmodified	_NMVKPRSLL_					0	0	0		ENST00000434116.6_1_15:65903979-65904138:+|nuORF	ENST00000434116.6_1_15:65903979-65904138:+|nuORF	ENST00000434116.6_1_15:65903979-65904138:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.312969	1056.61138	-1.0474	-0.00055441	-2.1374	-0.0011314	-3.1849	-0.0016858	529.8135583939385	44.303	0.21067	44.198	44.064	44.275	-0.10468	0.11231	0.00071619	NaN	29.15	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105440			55048	14239	38417	38481							0.08534368733512565
NMVLSNLSP	9	Unmodified	_NMVLSNLSP_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7522277832031	2	487.75241	973.490267	-1.0928	-0.00053302	0.88149	0.00042995	-0.21132	-0.00010307	487.7525506667395	75.238	0.70407	75.238	74.955	75.659	0					41	18	3	0	0	0	0.12914	1	9224	9224		104.06	2.8042	1	1586000			55049	6820	38418	38482	60345	60345					0.0024612130016521405
NMVPLLQTL	9	Oxidation (M)	_NM(Oxidation (M))VPLLQTL_		NM(1)VPLLQTL		NM(82)VPLLQTL	0	0	1		ENST00000369722.7_1_1:111998815-111999270:+|nuORF	ENST00000369722.7_1_1:111998815-111999270:+|nuORF	ENST00000369722.7_1_1:111998815-111999270:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7885131835938	2	522.791535	1043.56852	-0.78655	-0.0004112	-2.4767	-0.0012948	-3.2632	-0.001706	522.7901349707964	84.233	1.0095	84.233	83.866	84.876	0					60	23	4	0	0	0	0.25032	1	10566	10566		82.305	11.009	1	2932800			55050	12933	38419	38483	60346	60346		480			0.048475538854063416
NMWWYTGK	8	Unmodified	_NMWWYTGK_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2969360351562	2	543.247295	1084.48004	-0.95053	-0.00051637	-3.9031	-0.0021203	-4.8536	-0.0026367	543.2447445885477	73.385	0.79987	73.195	72.803	73.602	-0.19027					34	19	2	0	0	0	0.027866	1	8562	8562		30.504	3.7075	1	413240	+		55051	19822	38420	38484	60347	60347					-0.058824416344123165
NMYKLKINK	9	Unmodified	_NMYKLKINK_					0	0	0			REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.2949829101562	2	576.333901	1150.65325	0.12693	7.3152E-05	2.2285	0.0012844	2.3554	0.0013575	576.3351520215934	83.441	3.7718	83.272	81.742	85.514	-0.16916					157	88	3	0	0	0	0.024436	1	9990	9990		23.042	6.5693	1	258140	+		55052	31815	38421	38485	60348	60348					0.08394924421986616
NMYKLKINK	9	Unmodified	_NMYKLKINK_					0	0	0			REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.333901	1150.65325	-1.4073	-0.0008111	1.8049	0.0010402	0.39755	0.00022912	576.3360682041189	83.031	4.3422	83.031	80.822	85.164	0	-0.081411	-0.00032383	NaN	23.042	233	103	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330290	+		55053	31815	38421	38485							0.08394924421986616
NMYKLKINK	9	Unmodified	_NMYKLKINK_					0	0	0			REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	576.333901	1150.65325	0.54799	0.00031582	-0.1343	-7.74E-05	0.41369	0.00023842	576.3350562447238	83.096	3.6986	83.005	81.665	85.364	-0.090454	-0.10717	-0.0025591	NaN	23.042	203	87	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334190	+		55054	31815	38421	38485							0.08394924421986616
NMYKLKINK	9	Unmodified	_NMYKLKINK_					0	0	0			REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	REV__ENST00000398921.6_1_7:45788229-45798731:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.333901	1150.65325	-0.9455	-0.00054493	1.1463	0.00066066	0.20081	0.00011573	576.33574996162	83.049	3.7813	83.076	81.049	84.83	0.026558	-0.036242	-0.001083	NaN	23.042	200	89	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303360	+		55055	31815	38421	38485							0.08394924421986616
NMYLIALSD	9	Unmodified	_NMYLIALSD_					0	0	0		ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2919921875	2	520.260068	1038.50558	-0.86605	-0.00045057	4.0631	0.0021138	3.197	0.0016633	520.261931970531	73.015	0.59811	73.015	72.656	73.254	0					35	14	3	0	0	0	0.02435	1	8890	8890		51.335	8.9393	1	314900			55056	13907	38422	38486	60349	60349					-0.012130119026551256
NMYLIALSD	9	Unmodified	_NMYLIALSD_					0	0	0		ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	ENST00000416928.6_1_2:177040485-177040746:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.260068	1038.50558	-0.14507	-7.5476E-05	2.5593	0.0013315	2.4142	0.001256	520.2619586670048	73.326	0.44952	73.062	72.767	73.217	-0.26479	0.010338	-0.001302	NaN	56.721	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86599			55057	13907	38422	38486							-0.012130119026551256
NNAAIVRR	8	Unmodified	_NNAAIVRR_					0	0	0			REV__ENSG00000133731|ENST00000256108|IMPA1	REV__ENSG00000133731|ENST00000256108|IMPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2608642578125	2	457.26995	912.525347	1.0187	0.00046583	0.82106	0.00037545	1.8398	0.00084128	457.2702101689545	78.285	0.65327	78.093	77.604	78.257	-0.1921					30	15	3	0	0	0	0.027866	1	9629	9629		24.203	0	1	724810	+		55058	23389	38423	38487	60350	60350					0.06558544942981825
NNACPHSPPR	10	Unmodified	_NNACPHSPPR_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.810791015625	2	546.753807	1091.49306	-0.83545	-0.00045679	2.6391	0.0014429	1.8036	0.00098613	546.7550735245726	46.616	0.28393	46.667	46.474	46.758	0.051395					9	7	2	0	0	0	0.03519	1	4546	4546		34.173	0	1	156880	+		55059	22693	38424	38488	60351	60351					-0.04902610522321993
NNAREITDK	9	Unmodified	_NNAREITDK_					0	0	0			REV__LAMB4|p.K1279N|1|0.2|ENSG00000091128|chr7:108052176-108052176|C/G|missense_variant	REV__LAMB4|p.K1279N|1|0.2|ENSG00000091128|chr7:108052176-108052176|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.31298828125	2	530.772719	1059.53089	-1.3376	-0.00070998	-1.6578	-0.0008799	-2.9954	-0.0015899	530.7717512927063	64.724	0.6432	64.461	64.23	64.873	-0.2626					27	16	2	0	0	0	0.024367	1	7592	7592		29.17	0	1	382680	+		55060	36304	38425	38489	60352	60352					0.00350178944131585
NNARERLR	8	Unmodified	_NNARERLR_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112335-5112581:+|nuORF;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.790283203125	2	514.789038	1027.56352	-0.37384	-0.00019245	2.4076	0.0012394	2.0337	0.0010469	514.7904788724784	53.353	0.82323	53.353	53.011	53.835	0					64	22	5	0	0	0	0.6536	2	5783	5770;5783		71.296	10.324	1	3176900			55061	18628;1455	38426	38490	60353;60354	60354					0.050844308576643016
NNAVFTPE	8	Unmodified	_NNAVFTPE_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.2323913574219	2	446.213975	890.413397	-1.278	-0.00057026	3.1202	0.0013923	1.8422	0.00082202	446.21581131630836	37.92	0.47789	37.92	37.559	38.037	0					19	13	2	0	0	0	0.027866	1	3116	3116		31.955	17.818	1	176020			55062	6234	38427	38491	60355	60355					-0.03619353924648294
NNDDNVNIN	9	Unmodified	_NNDDNVNIN_					0	0	0			REV__ENSG00000169605|ENST00000377938|GKN1	REV__ENSG00000169605|ENST00000377938|GKN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7740478515625	2	516.223059	1030.43157	0.1431	7.3874E-05	-3.4652	-0.0017888	-3.3221	-0.001715	516.2212446811105	68.797	0.69617	68.567	68.316	69.012	-0.23048					20	16	2	0	0	0	0.024313	1	7975	7975		60.118	21.312	1	146620	+		55063	26383	38428	38492	60356	60356					-0.08243263740610018
NNDLTMWLG	9	Unmodified	_NNDLTMWLG_					0	0	0		SLAIN2-CWH43|2|fusion;ENSG00000109182|ENST00000226432|CWH43;SLAIN2-CWH43|1|fusion	SLAIN2-CWH43|2|fusion	SLAIN2-CWH43|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3218383789062	2	532.247492	1062.48043	-0.58293	-0.00031026	0.80565	0.0004288	0.22271	0.00011854	532.247724630709	75.298	0.42794	75.053	74.838	75.266	-0.24455					19	10	2	0	0	0	0.024477	1	9223	9223		27.882	3.6795	1	103050			55064	37877	38429	38493	60357	60357					-0.048310667052192
NNDLTMWLG	9	Unmodified	_NNDLTMWLG_					0	0	0		SLAIN2-CWH43|2|fusion;ENSG00000109182|ENST00000226432|CWH43;SLAIN2-CWH43|1|fusion	SLAIN2-CWH43|2|fusion	SLAIN2-CWH43|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.247492	1062.48043	-0.22678	-0.0001207	0.59945	0.00031905	0.37267	0.00019835	532.2472972325864	75.397	0.45053	75.124	74.934	75.384	-0.27266	0.052912	-1.6101E-05	NaN	27.882	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65958			55065	37877	38429	38493							-0.048310667052192
NNDLTMWLG	9	Unmodified	_NNDLTMWLG_					0	0	0		SLAIN2-CWH43|2|fusion;ENSG00000109182|ENST00000226432|CWH43;SLAIN2-CWH43|1|fusion	SLAIN2-CWH43|2|fusion	SLAIN2-CWH43|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.247492	1062.48043	-0.7412	-0.0003945	0.84555	0.00045004	0.10434	5.5537E-05	532.2476015821428	75.35	0.41312	75.091	74.906	75.319	-0.25866	0.020079	0.00024587	NaN	27.882	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71667			55066	37877	38429	38493							-0.048310667052192
NNDLTMWLG	9	Unmodified	_NNDLTMWLG_					0	0	0		SLAIN2-CWH43|2|fusion;ENSG00000109182|ENST00000226432|CWH43;SLAIN2-CWH43|1|fusion	SLAIN2-CWH43|2|fusion	SLAIN2-CWH43|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.247492	1062.48043	0.055748	2.9672E-05	0.32832	0.00017475	0.38406	0.00020442	532.2473637611478	75.202	0.41765	75.026	74.816	75.234	-0.17548	-0.044535	-0.00030472	NaN	27.882	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60172			55067	37877	38429	38493							-0.048310667052192
NNEGGVIAQV	10	Unmodified	_NNEGGVIAQV_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR;TNR|p.V694Yfs*3|1|0.08|ENSG00000116147|chr1:175366112-175366113|-/AGGTA|frameshift_variant	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8082275390625	2	500.756538	999.498523	-0.20269	-0.0001015	1.4734	0.00073782	1.2707	0.00063632	500.75675663475107	42.357	0.40092	42.225	41.985	42.386	-0.13219					25	11	4	0	0	0	0.03519	1	3886	3886		60.118	1.8883	1	143580			55068	3525	38430	38494	60358	60358					-0.001246084588501617
NNEKEVIPK	9	Unmodified	_NNEKEVIPK_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2;REV__ENST00000524293.1_1_8:27633031-27634707:+|nuORF	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3292846679688	2	535.795663	1069.57677	1.6676	0.00089348	-0.087134	-4.6686E-05	1.5804	0.00084679	536.2955642288206	19.038	0.64333	18.805	18.483	19.126	-0.23345					14	12	2	0	0	0	0.023274	1	351	351		67.494	0	1	24912	+		55069	26561;34380	38431	38495	60359	60359					0.044768241263682285
NNELLREASG	10	Unmodified	_NNELLREASG_					0	0	0		ENST00000304385.7_1_4:153547731-153547917:-|nuORF	ENST00000304385.7_1_4:153547731-153547917:-|nuORF	ENST00000304385.7_1_4:153547731-153547917:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.32666015625	2	551.778002	1101.54145	-1.0364	-0.00057184	0.29303	0.00016169	-0.74334	-0.00041016	551.7758215717516	54.056	0.46283	53.92	53.721	54.183	-0.13617					28	14	3	0	0	0	0.03519	1	5741	5741		14.865	0	1	286480			55070	11976	38432	38496	60360	60360					-0.005258384014496187
NNEQLLTK	8	Unmodified	_NNEQLLTK_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.8000183105469	2	480.261456	958.50836	-0.78895	-0.0003789	1.9488	0.00093594	1.1599	0.00055703	480.2624422323658	26.748	1.1473	26.829	26.21	27.357	0.081291					45	28	3	0	0	0	0.027866	1	1363	1363		82.241	5.4664	1	318530	+		55071	22924	38433	38497	60361	60361					0.02744579546526893
NNERVVVK	8	Unmodified	_NNERVVVK_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2906494140625	2	479.277441	956.540328	0.30281	0.00014513	4.0482	0.0019402	4.351	0.0020853	479.27898386830515	47.585	0.81158	47.432	47.015	47.827	-0.15301					59	23	4	0	0	0	0.027866	1	4696	4696		10.866	0	1	2802300			55072	1435	38434	38498	60362	60362					0.060319920203255606
NNEVQLEF	8	Unmodified	_NNEVQLEF_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.3005676269531	2	496.737814	991.461075	-1.2569	-0.00062433	0.61389	0.00030494	-0.64297	-0.00031939	496.73780868644724	33.587	1.2358	33.421	32.476	33.711	-0.16565					57	30	4	0	0	0	0.027866	1	2368	2368		29.15	0	1	2227100			55073	3178	38435	38499	60363	60363					-0.03499699724477523
NNFDVSLWN	9	Unmodified	_NNFDVSLWN_					0	0	0			REV__nc|ENSG00000110958|Q15185-2|PTGES3	REV__nc|ENSG00000110958|Q15185-2|PTGES3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.217041015625	2	554.756538	1107.49852	-0.26942	-0.00014946	-0.13901	-7.7117E-05	-0.40843	-0.00022658	554.7563589893326	70.328	0.57445	70.056	69.658	70.232	-0.27185					24	13	2	0	0	0	0.024456	1	8175	8175		42.864	8.6917	1	608190	+		55074	21887	38436	38500	60364	60364					-0.050926084588581944
NNFFANMSL	9	Unmodified	_NNFFANMSL_					0	0	0			REV__RWDD4-SORBS2|5|fusion	REV__RWDD4-SORBS2|5|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.274658203125	2	529.242209	1056.46987	-0.22342	-0.00011825	1.0972	0.00058069	0.87379	0.00046245	529.2426278304883	45.708	2.7484	45.752	44.45	47.199	0.043877					181	78	3	0	0	0	0.024344	1	4625	4625		37.812	6.2817	1	1703100	+		55075	37453	38437	38501	60365	60365					-0.05611049359640674
NNFIIGRDR	9	Unmodified	_NNFIIGRDR_					0	0	0			REV__ENSG00000130649|ENST00000252945|CYP2E1	REV__ENSG00000130649|ENST00000252945|CYP2E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8294677734375	2	552.799072	1103.58359	-0.66651	-0.00036844	1.9665	0.0010871	1.3	0.00071862	552.7995284122804	49.114	0.14133	48.962	48.9	49.041	-0.15277					9	3	3	0	0	0	0.024506	1	5035	5035		16.473	0	1	194090	+		55076	23130	38438	38502	60366	60366					0.03594181797620877
NNFSPIVNR	9	Unmodified	_NNFSPIVNR_					0	0	0			REV__ENSG00000172238|ENST00000306011|ATOH1	REV__ENSG00000172238|ENST00000306011|ATOH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8013916015625	2	530.780348	1059.54614	0.12919	6.857E-05	-1.2596	-0.00066855	-1.1304	-0.00059998	530.7799295108945	41.104	0.32407	40.981	40.762	41.086	-0.12317					13	8	2	0	0	0	0.024025	1	3620	3620		62.107	0	1	130210	+		55077	26649	38439	38503	60367	60367					0.018750905319848243
NNFVGVKVE	9	Unmodified	_NNFVGVKVE_					0	0	0			REV__ENSG00000144619|ENST00000418658|CNTN4	REV__ENSG00000144619|ENST00000418658|CNTN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2713317871094	2	503.271824	1004.5291	-0.29543	-0.00014868	0.17219	8.6657E-05	-0.12324	-6.2024E-05	503.27187861774485	57.165	1.1063	57.165	56.497	57.603	0					70	30	3	0	0	0	0.72494	1	6439	6439		44.377	1.9027	1	9951800	+		55078	24346	38440	38504	60368	60368					0.027011699261947797
NNGFNPWW	8	Unmodified	_NNGFNPWW_					0	0	0		ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38049266-38050137:-|nuORF	ENSG00000187091|ENST00000334661|PLCD1	ENSG00000187091|ENST00000334661|PLCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2813720703125	2	517.727584	1033.44061	0.43401	0.0002247	-1.0817	-0.00056003	-0.6477	-0.00033533	517.7265760385872	75	0.58833	74.817	74.434	75.022	-0.18279					24	13	3	0	0	0	0.027866	1	8819	8819		35.201	3.2459	1	78074			55079	9606	38441	38505	60369	60369					-0.07476825593630565
NNGGCAQKCQM	11	Unmodified	_NNGGCAQKCQM_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.3082885742188	2	577.230993	1152.44743	-0.052581	-3.0351E-05	-3.236	-0.0018679	-3.2886	-0.0018983	577.2286915309653	72.538	0.85182	72.261	71.947	72.799	-0.2769					55	19	4	0	0	0	0.024749	1	8566	8566		19.104	0	1	2223000			55080	4809	38442	38506	60370	60370					-0.12269340091211234
NNGIKQVR	8	Unmodified	_NNGIKQVR_					0	0	0			REV__ENSG00000157152|ENST00000621198|SYN2	REV__ENSG00000157152|ENST00000621198|SYN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7709655761719	2	464.769783	927.525013	0.96414	0.0004481	2.5317	0.0011767	3.4959	0.0016248	464.7707826876858	75.915	0.8013	75.927	75.645	76.446	0.011635					49	20	3	0	0	0	0.75307	1	9267	9267		62.978	8.2138	1	1946600	+		55081	25116	38443	38507	60371	60371					0.05835125223131854
NNGIRDFST	9	Unmodified	_NNGIRDFST_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2951049804688	2	512.246338	1022.47812	-0.76559	-0.00039217	0.89689	0.00045943	0.1313	6.7259E-05	512.2468561382301	66.159	1.1919	65.945	65.296	66.488	-0.21327					47	29	2	0	0	0	0.024447	1	7506	7506		32.812	13.452	1	1249000			55082	3238	38444	38508	60372	60372					-0.032217791186667455
NNGKTGQLCRR	11	Unmodified	_NNGKTGQLCRR_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.2206726074219	3	416.219289	1245.63604	-0.3815	-0.00015879	3.9971	0.0016637	3.6156	0.0015049	416.22074792070606	24.459	2.0792	24.243	23.822	25.901	-0.2151					130	48	4	0	0	0	0.99147	1	1069	1069		38.714	1.2059	1	2424200	+		55083	36519	38445	38509	60373	60373					0.02304396868908043
NNGSKKIIEM	10	Unmodified	_NNGSKKIIEM_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|125|2|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|125|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.3131713867188	2	567.302798	1132.59104	0.010151	5.7588E-06	-1.8982	-0.0010769	-1.8881	-0.0010711	567.3016876947391	34.442	0.69813	34.218	33.923	34.621	-0.22412					27	17	3	0	0	0	0.03519	1	2591	2591		30.318	0	1	356710	+		55084	36263	38446	38510	60374	60374					0.03005153283038453
NNHLPHPLN	9	Unmodified	_NNHLPHPLN_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2737426757812	2	528.27269	1054.53083	-1.3541	-0.00071536	2.6378	0.0013935	1.2837	0.00067813	528.2741255285842	92.005	2.5491	92.005	91.299	93.848	0					227	60	6	0	0	0	0.35646	1	11783	11783		68.787	2.3575	1	45968000			55085	10343	38447	38511	60375	60375					0.005742237347931223
NNHPLLFAL	9	Unmodified	_NNHPLLFAL_					0	0	0			REV__ENST00000330083.5_2_6:30594964-30595045:+|nuORF	REV__ENST00000330083.5_2_6:30594964-30595045:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7701416015625	2	519.790184	1037.56581	-1.2052	-0.00062644	0.96493	0.00050156	-0.24025	-0.00012488	519.790475632269	35.486	0.64903	35.486	35.2	35.849	0					29	16	2	0	0	0	0.024412	1	2780	2780		31.955	0	1	626880	+		55086	30449	38448	38512	60376	60376					0.04853466542749629
NNHPLLFAL	9	Unmodified	_NNHPLLFAL_					0	0	0			REV__ENST00000330083.5_2_6:30594964-30595045:+|nuORF	REV__ENST00000330083.5_2_6:30594964-30595045:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7698974609375	2	519.790184	1037.56581	-1.1641	-0.00060511	0.93416	0.00048557	-0.22999	-0.00011955	519.7904192043545	35.375	0.84102	35.353	34.828	35.669	-0.021763					35	21	2	0	0	0	0.024262	1	2740	2740		47.916	0	1	554850	+		55087	30449	38448	38512	60377	60377					0.04853466542749629
NNICDLYQEGN	11	Unmodified	_NNICDLYQEGN_					0	0	0			REV__ENSG00000164089|ENST00000296486|ETNPPL	REV__ENSG00000164089|ENST00000296486|ETNPPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2617492675781	3	428.183798	1281.52957	0.60566	0.00025933	3.4084	0.0014594	4.0141	0.0017188	428.5189382616065	90.228	0.36147	90.09	89.835	90.196	-0.13824					16	8	3	0	0	0	0.024746	1	10992	10992		15.921	0	1	84381	+		55088	25692	38449	38513	60378	60378					-0.0999382320692348
NNIERVEKV	9	Unmodified	_NNIERVEKV_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8060913085938	2	550.806562	1099.59857	-0.22397	-0.00012336	-0.31311	-0.00017246	-0.53707	-0.00029582	550.8062836715147	38.689	0.59441	38.463	38.177	38.771	-0.2257					45	15	4	0	0	0	0.2101	1	3197	3197		87.696	10.379	1	2391600			55089	8694	38450	38514	60379	60379					0.052756288749378655
NNIFVMKSL	9	Unmodified	_NNIFVMKSL_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7904663085938	2	533.291702	1064.56885	-1.1245	-0.0005997	0.25106	0.00013389	-0.87346	-0.00046581	533.2921178225696	55.887	0.76457	55.985	55.782	56.546	0.097893					50	20	4	0	0	0	0.024319	1	6115	6115		47.657	0	1	3054400	+		55090	23819	38451	38515	60380	60380					0.03914973605265004
NNIHPLRLT	9	Unmodified	_NNIHPLRLT_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|101|2|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|101|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3280029296875	2	539.311815	1076.60908	-0.83623	-0.00045099	2.423	0.0013068	1.5868	0.00085577	539.814272867859	81.896	0.36024	81.896	81.671	82.031	0					14	8	3	0	0	0	0.024466	1	10200	10200		31.53	13.205	1	205040	+		55091	36230	38452	38516	60381	60381					0.07383656320030241
NNIKSKTL	8	Unmodified	_NNIKSKTL_					0	0	0		nc|ENSG00000163535|Q562F6-3|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2743835449219	2	459.274367	916.53418	0.039592	1.8184E-05	-0.067287	-3.0903E-05	-0.027695	-1.272E-05	459.27419557269826	34.311	0.73741	34.087	33.762	34.499	-0.22412					46	18	3	0	0	0	0.845	1	2540	2540		55.504	2.1528	1	2902200			55092	7102	38453	38517	60382	60382					0.07257473788820334
NNIKSKTL	8	Unmodified	_NNIKSKTL_					0	0	0		nc|ENSG00000163535|Q562F6-3|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2742919921875	2	459.274367	916.53418	-0.25851	-0.00011873	0.24488	0.00011247	-0.013631	-6.2602E-06	459.274316045816	34.27	0.98732	34.063	33.824	34.812	-0.20696					55	24	4	0	0	0	0.30053	1	2520	2520		111.65	13.019	1	2601100			55093	7102	38453	38517	60383	60383					0.07257473788820334
NNIKSKTL	8	Unmodified	_NNIKSKTL_					0	0	0		nc|ENSG00000163535|Q562F6-3|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	nc|ENSG00000163535|Q562F6-3|SGO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.274169921875	2	459.274367	916.53418	-0.78591	-0.00036095	0.55997	0.00025718	-0.22595	-0.00010377	459.27451523719617	34.257	0.78986	34.081	33.781	34.571	-0.17557					50	19	4	0	0	0	0.83003	1	2514	2514		56.721	5.3856	1	2617200			55094	7102	38453	38517	60384	60384					0.07257473788820334
NNILKIGK	8	Unmodified	_NNILKIGK_					0	0	0		ENST00000440082.5_1_7:30536264-30536414:-|nuORF	ENST00000440082.5_1_7:30536264-30536414:-|nuORF	ENST00000440082.5_1_7:30536264-30536414:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2480773925781	2	450.287277	898.560001	-0.17155	-7.7247E-05	-0.42325	-0.00019058	-0.5948	-0.00026783	450.28695025882365	40.108	0.68063	39.883	39.541	40.222	-0.225					21	17	2	0	0	0	0.027866	1	3396	3396		6.3127	0	1	132910			55095	14343	38454	38518	60385	60385					0.10666368031081674
NNIQNLCF	8	Unmodified	_NNIQNLCF_					0	0	0			REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.8085021972656	2	483.229102	964.443651	0.4363	0.00021083	-1.164	-0.00056247	-0.72769	-0.00035164	483.2287685186576	21.013	0.72311	20.835	20.533	21.256	-0.17721					28	14	3	0	0	0	0.027866	1	655	655		13.775	0	1	43739	+		55096	33731	38455	38519	60386	60386					-0.03999318531123208
NNIQNLCF	8	Unmodified	_NNIQNLCF_					0	0	0			REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.8085021972656	2	483.229102	964.443651	0.61553	0.00029744	-0.4764	-0.00023021	0.13913	6.7234E-05	483.2286826828892	21.695	0.95275	21.518	21.113	22.066	-0.17721					32	19	2	0	0	0	0.027866	1	655	655		13.775	0	1	30640	+		55097	33731	38455	38519	60387	60387					-0.03999318531123208
NNIRKRQS	8	Unmodified	_NNIRKRQS_					0	0	0			REV__ENST00000473640.1_1_1:176992565-177001685:-|nuORF	REV__ENST00000473640.1_1_1:176992565-177001685:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7684020996094	2	508.291414	1014.56827	-0.62507	-0.00031772	2.895	0.0014715	2.27	0.0011538	508.29282929687935	23.419	0.70387	23.419	23.033	23.737	0					30	16	2	0	0	0	0.027866	1	865	865		40.573	3.4135	1	306290	+		55098	24815	38456	38520	60388	60388					0.06157315000427843
NNIRKRQS	8	Unmodified	_NNIRKRQS_					0	0	0			REV__ENST00000473640.1_1_1:176992565-177001685:-|nuORF	REV__ENST00000473640.1_1_1:176992565-177001685:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.291414	1014.56827	-0.88036	-0.00044748	-3.6475	-0.001854	-4.5279	-0.0023015	508.79038464465077	23.788	0.21305	23.727	23.643	23.856	-0.060862	0.15409	-0.0063205	NaN	24.203	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13276	+		55099	24815	38456	38520							0.06157315000427843
NNIVSLPAI	9	Unmodified	_NNIVSLPAI_					0	0	0		ENST00000517746.5_1_8:108263863-108264013:-|nuORF	ENST00000517746.5_1_8:108263863-108264013:-|nuORF	ENST00000517746.5_1_8:108263863-108264013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2600402832031	2	470.776742	939.538931	0.83114	0.00039128	-0.3453	-0.00016256	0.48584	0.00022872	470.7763035017089	68.482	0.82906	68.501	68.004	68.833	0.018921					45	21	3	0	0	0	0.024381	1	8107	8107		21.96	0	1	545160			55100	15918	38457	38521	60389	60389					0.0667435793156983
NNKATLNGLIF	11	Unmodified	_NNKATLNGLIF_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	603.2955322265625	2	602.837862	1203.66117	-0.88722	-0.00053485	0.58492	0.00035261	-0.3023	-0.00018224	602.8383126841103	68.582	0.32408	68.32	68.142	68.466	-0.26166					13	7	2	0	0	0	0.02475	1	7908	7908		35.152	0	1	141650	+		55101	22418	38458	38522	60390	60390					0.06748774943139324
NNKHLPRPE	9	Unmodified	_NNKHLPRPE_					0	0	0		ST18|p.S358L|1|0.48|ENSG00000147488|chr8:52166983-52166983|G/A|missense_variant	ST18|p.S358L|1|0.48|ENSG00000147488|chr8:52166983-52166983|G/A|missense_variant	ST18|p.S358L|1|0.48|ENSG00000147488|chr8:52166983-52166983|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.81787109375	2	552.799072	1103.58359	-0.47374	-0.00026188	0.98218	0.00054295	0.50845	0.00028107	552.7993845645202	63.304	1.0164	63.052	62.642	63.659	-0.25141					48	26	2	0	0	0	0.02435	1	7309	7309		34.173	0	1	307050			55102	37971	38459	38523	60391	60391					0.03594181797620877
NNKILIHS	8	Unmodified	_NNKILIHS_					0	0	0			REV__nc|ENSG00000010327|Q9NY15-2|STAB1	REV__nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.5497741699219	2	469.774534	937.534515	-0.98663	-0.00046349	0.95821	0.00045014	-0.028417	-1.3349E-05	469.7746221111198	41.253	0.99	41.022	40.554	41.544	-0.2303					42	25	2	0	0	0	0.027866	1	3545	3545		30.504	9.5567	1	207440	+		55103	33456	38460	38524	60392	60392					0.06324893508644891
NNKILIHS	8	Unmodified	_NNKILIHS_					0	0	0			REV__nc|ENSG00000010327|Q9NY15-2|STAB1	REV__nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	469.774534	937.534515	0.28915	0.00013583	0.11379	5.3453E-05	0.40293	0.00018929	469.77431167002317	40.987	0.51814	41.01	40.629	41.147	0.023006	0.023497	-0.00035512	NaN	38.806	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100530	+		55104	33456	38460	38524							0.06324893508644891
NNKILIHS	8	Unmodified	_NNKILIHS_					0	0	0			REV__nc|ENSG00000010327|Q9NY15-2|STAB1	REV__nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.774534	937.534515	-0.19031	-8.9405E-05	0.39704	0.00018652	0.20672	9.7113E-05	469.7744160668351	41.039	0.84839	40.903	40.524	41.372	-0.13553	-0.082757	-8.8993E-05	NaN	38.806	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223140	+		55105	33456	38460	38524							0.06324893508644891
NNKILIHS	8	Unmodified	_NNKILIHS_					0	0	0			REV__nc|ENSG00000010327|Q9NY15-2|STAB1	REV__nc|ENSG00000010327|Q9NY15-2|STAB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.774534	937.534515	-0.11056	-5.1939E-05	0.25594	0.00012023	0.14537	6.8292E-05	469.77434097851756	41.237	0.92924	41.009	40.544	41.474	-0.2278	0.022897	-0.00022156	NaN	38.806	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241980	+		55106	33456	38460	38524							0.06324893508644891
NNKKIDGLL	9	Unmodified	_NNKKIDGLL_					0	0	0		ENST00000498505.5_1_3:139068252-139075853:+|nuORF;ENSG00000175110|ENST00000680020|MRPS22	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	ENST00000498505.5_1_3:139068252-139075853:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.80059814453125	2	507.800749	1013.58694	-0.40153	-0.0002039	-0.65124	-0.0003307	-1.0528	-0.0005346	507.800441579446	31.14	1.3588	30.987	30.681	32.04	-0.15231					84	33	5	0	0	0	0.29158	1	2004	2004		76.774	2.5191	1	12632000			55107	8530	38461	38525	60393	60393					0.08069431851606623
NNKKKRLK	8	Unmodified	_NNKKKRLK_					0	0	0		ENST00000520361.5_1_5:77004104-77004149:-|nuORF	ENST00000520361.5_1_5:77004104-77004149:-|nuORF	ENST00000520361.5_1_5:77004104-77004149:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8025512695312	2	514.838	1027.66145	1.0007	0.00051518	-2.1151	-0.0010889	-1.1144	-0.00057373	514.8370066563491	59.683	0.21462	59.683	59.598	59.813	0					9	5	2	0	0	0	0.027866	1	6848	6848		50.025	7.5501	1	155480			55108	15977	38462	38526	60394	60394					0.14872239453643488
NNKKSKNR	8	Unmodified	_NNKKSKNR_					0	0	0			REV__ENST00000410000.2_1_2:70142417-70143353:+|nuORF	REV__ENST00000410000.2_1_2:70142417-70143353:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7867126464844	2	494.785964	987.557376	0.86652	0.00042874	2.3059	0.0011409	3.1725	0.0015697	494.78678261273404	19.53	0.78685	19.33	19.156	19.943	-0.2001					21	15	2	0	0	0	0.97924	1	432	432		40.573	1.7665	1	183980	+		55109	20244	38463	38527	60395	60395					0.06309912626136338
NNKKTQQR	8	Unmodified	_NNKKTQQR_					0	0	0		ENST00000461502.1_1_13:32999968-33006966:-|nuORF	ENST00000461502.1_1_13:32999968-33006966:-|nuORF	ENST00000461502.1_1_13:32999968-33006966:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.29248046875	2	508.783422	1015.55229	-0.60038	-0.00030546	2.5753	0.0013103	1.9749	0.0010048	508.78497130743915	74.491	0.62621	74.501	74.268	74.895	0.0096512					24	14	2	0	0	0	0.027866	1	9017	9017		11.511	0	1	305720			55110	14684	38464	38528	60396	60396					0.04513608763522825
NNKLICNET	9	Unmodified	_NNKLICNET_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7591552734375	2	524.758223	1047.50189	-0.12719	-6.6743E-05	3.1422	0.0016489	3.0151	0.0015822	524.7601337852248	57.267	0.35752	57.042	56.851	57.209	-0.22479					15	9	2	0	0	0	0.024405	1	6237	6237		27.882	1.1893	1	175750			55111	5217	38465	38529	60397	60397					-0.01995681676521599
NNKLRQTF	8	Unmodified	_NNKLRQTF_					0	0	0		ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.80108642578125	2	510.78289	1019.55123	-0.034004	-1.7369E-05	3.3664	0.0017195	3.3324	0.0017021	510.784557420522	87.684	1.1526	87.547	87.038	88.19	-0.13734					43	27	2	0	0	0	0.027866	1	10744	10744		38.806	20.482	1	107590			55112	3863	38466	38530	60398	60398					0.042233943946030195
NNKLRQTF	8	Unmodified	_NNKLRQTF_					0	0	0		ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	ENSG00000121314|ENST00000240615|TAS2R8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.78289	1019.55123	-0.19556	-9.9887E-05	4.1444	0.0021169	3.9489	0.002017	510.7843383366175	87.706	0.89457	87.527	87.028	87.923	-0.17875	-0.0098222	0.00056704	NaN	38.806	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109760			55113	3863	38466	38530							0.042233943946030195
NNKPELPIE	9	Unmodified	_NNKPELPIE_					0	0	0			REV__nc|ENSG00000101096|Q13469-5|NFATC2	REV__nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2841796875	2	527.282389	1052.55022	0.071926	3.7925E-05	3.4582	0.0018234	3.5301	0.0018614	527.2839175211568	87.506	2.0331	87.369	86.829	88.862	-0.13734					61	48	2	0	0	0	0.024344	1	10597	10597		37.812	0	1	425170	+		55114	21182	38467	38531	60399	60399					0.026051352350577872
NNKTLEKPD	9	Unmodified	_NNKTLEKPD_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7927856445312	2	529.77747	1057.54039	-0.46794	-0.0002479	2.5099	0.0013297	2.0419	0.0010818	529.7786697642492	104.67	0.50642	104.67	104.47	104.97	0					28	15	2	0	0	0	0.024292	1	13417	13417		40.778	0	1	124290			55115	1235	38468	38532	60400	60400					0.01391947229649304
NNKVKVIL	8	Unmodified	_NNKVKVIL_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000600818.1_1_19:39966660-39967036:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.3031311035156	2	464.302927	926.591301	-0.024529	-1.1389E-05	-0.16081	-7.4664E-05	-0.18534	-8.6052E-05	464.30269718180347	35.18	0.74677	34.964	34.671	35.418	-0.21556					47	18	4	0	0	0	0.43637	1	2640	2640		92.191	9.8856	1	2723000			55116	9842	38469	38533	60401	60401					0.125069410651804
NNKVLMQL	8	Unmodified	_NNKVLMQL_					0	0	0		ENSG00000196475|ENST00000358842|GK2;GK2|p.T429N|1|0.29|ENSG00000196475|chr4:79406915-79406915|G/T|missense_variant	ENSG00000196475|ENST00000358842|GK2	ENSG00000196475|ENST00000358842|GK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2897644042969	2	480.27077	958.526987	-0.035731	-1.716E-05	-4.4602	-0.0021421	-4.496	-0.0021593	480.268366274516	48.578	0.69417	48.578	48.378	49.072	0					26	19	2	0	0	0	0.027866	1	5019	5019		12.207	0	1	503500			55117	9880	38470	38534	60402	60402					0.046064179167160546
NNKVLSFTI	9	Unmodified	_NNKVLSFTI_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2616577148438	2	518.295299	1034.57605	-0.34922	-0.000181	-1.702	-0.00088212	-2.0512	-0.0010631	518.2933131927556	56.382	0.69	56.157	55.736	56.426	-0.2248					32	17	3	0	0	0	0.024374	1	6071	6071		40.778	3.6191	1	198540			55118	6485	38471	38535	60403	60403					0.060140294773418645
NNLAFLRK	8	Unmodified	_NNLAFLRK_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2710266113281	2	488.290351	974.566149	-0.26304	-0.00012844	0.48101	0.00023487	0.21797	0.00010643	488.2905476378608	24.356	0.2672	24.141	23.909	24.177	-0.2151					9	5	2	0	0	0	0.027866	1	1039	1039		19.36	0	1	32416	+		55119	27649	38472	38536	60404	60404					0.0778488626260696
NNLDVIRIT	9	Unmodified	_NNLDVIRIT_					0	0	0			REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3265991210938	2	529.303655	1056.59276	-0.09501	-5.0289E-05	4.2272	0.0022374	4.1321	0.0021872	529.305461314493	65.776	0.56958	65.806	65.552	66.121	0.030106					25	14	2	0	0	0	0.024405	1	7755	7755		35.618	5.1146	1	407070	+		55120	24625	38473	38537	60405	60405					0.0667253036326656
NNLGPNSAL	9	Unmodified	_NNLGPNSAL_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.74078369140625	2	450.232699	898.450845	-0.9534	-0.00042925	1.4314	0.00064447	0.47802	0.00021522	450.2332826695514	30.076	0.53685	30.15	29.759	30.296	0.074314					19	12	2	0	0	0	0.023817	1	1867	1867		60.972	0	1	267590	+		55121	20429	38474	38538	60406	60406					-0.002442626590436703
NNLHNQHF	8	Unmodified	_NNLHNQHF_					0	0	0			REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF	REV__ENST00000567297.5_1_16:20818275-20837201:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7747192382812	2	512.24139	1022.46823	-0.21403	-0.00010964	-1.0414	-0.00053345	-1.2554	-0.00064308	512.2408641965462	24.599	0.94346	24.383	23.733	24.677	-0.2151					40	21	3	0	0	0	0.027866	1	1050	1050		26.796	0	1	193510	+		55122	19798	38475	38539	60407	60407					-0.04210922333379585
NNLKLLAV	8	Unmodified	_NNLKLLAV_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2904357910156	2	442.781828	883.549102	-0.74196	-0.00032853	1.4641	0.00064826	0.7221	0.00031973	442.78234671227784	44.494	0.35797	44.275	44.108	44.466	-0.21939					13	9	2	0	0	0	0.027866	1	4145	4145		25.45	0	1	115760	+		55123	21936	38476	38540	60408	60408					0.10266965656808225
NNLLLLQQI	9	Unmodified	_NNLLLLQQI_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7658081054688	2	534.824224	1067.63389	-0.62037	-0.00033179	-2.1377	-0.0011433	-2.7581	-0.0014751	534.8226821010023	49.377	0.54361	49.224	48.9	49.443	-0.15276					24	14	2	0	0	0	0.024405	1	5075	5075		35.618	0	1	472300			55124	4218	38477	38541	60409	60409					0.10278291402755713
NNLLNGDLV	9	Unmodified	_NNLLNGDLV_					0	0	0			REV__FLRT3|p.R203H|1|0.31|ENSG00000125848|chr20:14326899-14326899|C/T|missense_variant	REV__FLRT3|p.R203H|1|0.31|ENSG00000125848|chr20:14326899-14326899|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.26129150390625	2	486.261456	970.50836	-2.0971	-0.0010198	1.8798	0.00091407	-0.21733	-0.00010568	486.2622740613007	38.373	1.083	38.401	38.162	39.245	0.027275					74	29	5	0	0	0	0.43973	1	3150	3150		63.306	7.8021	1	5615200	+		55125	22851	38478	38542	60410	60410					0.02192579546522211
NNLNDNVIL	9	Unmodified	_NNLNDNVIL_					0	0	0			REV__ENST00000491987.1_1_22:35723272-35729230:+|nuORF	REV__ENST00000491987.1_1_22:35723272-35729230:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7907104492188	2	514.772188	1027.52982	-0.40235	-0.00020712	-2.8015	-0.0014421	-3.2039	-0.0016493	514.7721699978533	41.292	0.38368	41.315	41.147	41.53	0.023006					12	10	2	0	0	0	0.024397	1	3662	3662		47.657	30.292	1	80796	+		55126	21079	38479	38543	60411	60411					0.017159645752371944
NNLNKLVL	8	Unmodified	_NNLNKLVL_					0	0	0			REV__ENSG00000110713|ENST00000324932|NUP98	REV__ENSG00000110713|ENST00000324932|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7380065917969	2	464.284734	926.554916	-0.54283	-0.00025203	0.81483	0.00037831	0.272	0.00012629	464.28499083542795	32.215	0.61986	32.215	31.949	32.569	0					19	15	2	0	0	0	0.027866	1	2204	2204		8.2313	0	1	117440	+		55127	21869	38480	38544	60412	60412					0.08870064168456793
NNLNQGPSL	9	Unmodified	_NNLNQGPSL_					0	0	0		nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825;ENST00000504117.1_1_5:93752768-93812878:-|nuORF	nc|ENSG00000185261|Q8IV33-3|KIAA0825	nc|ENSG00000185261|Q8IV33-3|KIAA0825	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7435302734375	2	478.743431	955.472308	-0.65544	-0.00031379	0.60155	0.00028799	-0.053881	-2.5795E-05	478.7435390917275	30.002	0.98324	30.002	29.692	30.675	0					66	23	4	0	0	0	0.12602	2	1895	1884;1895		104.75	2.7895	1	6555800			55128	9422	38481	38545	60413;60414	60414					-0.007208776303286868
NNLNTEFEQ	9	Unmodified	_NNLNTEFEQ_					0	0	0			REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|10|3|sense	REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|10|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3237915039062	2	554.74891	1107.48327	-0.42754	-0.00023718	1.9241	0.0010674	1.4966	0.00083021	554.7500301467703	50.429	0.43141	50.429	50.178	50.609	0					20	12	2	0	0	0	0.024484	1	5309	5309		30.318	6.115	1	219060	+		55129	19126	38482	38546	60415	60415					-0.06617520046734171
NNLNTEFEQ	9	Unmodified	_NNLNTEFEQ_					0	0	0			REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|10|3|sense	REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|10|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.74891	1107.48327	-0.32646	-0.0001811	1.0076	0.00055899	0.68119	0.00037789	554.7496520558827	50.618	0.36923	50.469	50.256	50.626	-0.14916	0.038596	-7.2183E-06	NaN	61.691	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190420	+		55130	19126	38482	38546							-0.06617520046734171
NNLNTEFEQ	9	Unmodified	_NNLNTEFEQ_					0	0	0			REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|10|3|sense	REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|10|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	554.74891	1107.48327	0.19601	0.00010874	0.50393	0.00027956	0.69994	0.00038829	554.7492426020127	50.312	0.3287	50.393	50.148	50.477	0.08099	-0.037209	-0.00056609	NaN	61.691	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222690	+		55131	19126	38482	38546							-0.06617520046734171
NNLQEWQP	8	Unmodified	_NNLQEWQP_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3235473632812	2	514.743431	1027.47231	1.2494	0.00064313	-1.3288	-0.000684	-0.079417	-4.0879E-05	514.7425805289768	74.035	0.72662	74.035	73.655	74.382	0					37	16	3	0	0	0	0.027866	1	9061	9061		45.952	5.3793	1	809950	+		55132	21022	38483	38547	60416	60416					-0.04032877630334042
NNLQEWQP	8	Unmodified	_NNLQEWQP_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3231201171875	2	514.743431	1027.47231	-0.015988	-8.2296E-06	-0.49675	-0.0002557	-0.51274	-0.00026393	514.743081143883	74.658	3.0406	74.399	73.701	76.741	-0.25887					143	76	2	0	0	0	0.027866	1	9030	9030		44.117	0	1	778730	+		55133	21022	38483	38547	60417	60417					-0.04032877630334042
NNLQEWQP	8	Unmodified	_NNLQEWQP_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.32373046875	2	514.743431	1027.47231	-0.577	-0.000297	-0.20858	-0.00010736	-0.78557	-0.00040437	514.7432580729833	74.739	2.8067	74.75	73.968	76.774	0.010368					134	70	4	0	0	0	0.027866	1	8976	8976		55.504	14.932	1	766630	+		55134	21022	38483	38547	60418	60418					-0.04032877630334042
NNLQEWQP	8	Unmodified	_NNLQEWQP_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.32373046875	2	514.743431	1027.47231	-0.96419	-0.00049631	-1.0618	-0.00054654	-2.026	-0.0010428	514.7435521189534	74.081	0.76741	74.09	73.713	74.481	0.0096512					47	17	4	0	0	0	0.027866	1	8976	8976		55.504	14.932	1	812910	+		55135	21022	38483	38547	60419	60419					-0.04032877630334042
NNLRKEKS	8	Unmodified	_NNLRKEKS_					0	0	0		ENSG00000163563|ENST00000368141|MNDA;ENST00000491210.1_1_1:158811943-158812264:+|nuORF	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.815673828125	2	494.780348	987.546142	-1.0737	-0.00053127	-0.82714	-0.00040925	-1.9009	-0.00094052	494.77928216213047	21.123	0.44524	20.91	20.624	21.069	-0.2128					12	8	2	0	0	0	0.027866	1	575	575		73.975	0	1	12441			55136	7107	38484	38548	60420	60420					0.05187090532001548
NNLRKEKS	8	Unmodified	_NNLRKEKS_					0	0	0		ENSG00000163563|ENST00000368141|MNDA;ENST00000491210.1_1_1:158811943-158812264:+|nuORF	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.780348	987.546142	-0.018105	-8.958E-06	3.3965	0.0016805	3.3784	0.0016716	494.7820588779457	21.305	0.33609	21.128	20.967	21.303	-0.17721	0.10881	0.0014179	NaN	73.975	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19433			55137	7107	38484	38548							0.05187090532001548
NNLVMQVYPQ	10	Unmodified	_NNLVMQVYPQ_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	603.3001098632812	2	603.302798	1204.59104	-0.13841	-8.3506E-05	-3.0649	-0.0018491	-3.2033	-0.0019326	603.3008332875502	32.777	0.96715	32.585	32.249	33.216	-0.19261					57	23	4	0	0	0	1.0639	1	2275	2275		32.812	0	1	1829600	+		55138	21540	38485	38549	60421	60421					-0.003068467169896394
NNMAHVYKP	9	Unmodified	_NNMAHVYKP_					0	0	0			REV__ENST00000462211.5_1_13:101277731-101294530:-|nuORF	REV__ENST00000462211.5_1_13:101277731-101294530:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.81591796875	2	537.263476	1072.5124	-0.88998	-0.00047815	2.9398	0.0015795	2.0498	0.0011013	537.2649569190203	65.268	0.54974	65.268	65.055	65.605	0					22	15	2	0	0	0	0.024405	1	7781	7781		35.618	6.4687	1	493570	+		55139	22804	38486	38550	60422	60422					-0.020956542314252147
NNMAHVYKP	9	Unmodified	_NNMAHVYKP_					0	0	0			REV__ENST00000462211.5_1_13:101277731-101294530:-|nuORF	REV__ENST00000462211.5_1_13:101277731-101294530:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.263476	1072.5124	-0.95014	-0.00051047	2.8367	0.0015241	1.8866	0.0010136	537.2649323828555	65.641	0.55161	65.368	65.055	65.606	-0.27282	0.043651	-4.65E-05	NaN	20.947	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375390	+		55140	22804	38486	38550							-0.020956542314252147
NNMETNSLT	9	Unmodified	_NNMETNSLT_					0	0	0			REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF	REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2249755859375	2	512.224214	1022.43387	-0.52563	-0.00026924	3.2943	0.0016874	2.7687	0.0014182	512.2257257461157	62.441	1.3978	62.503	62.272	63.67	0.062767					57	36	2	0	0	0	0.53979	1	7179	7179		56.721	0	1	870640	+		55141	26386	38487	38551	60423	60423					-0.07644551327166482
NNMGLKPN	8	Unmodified	_NNMGLKPN_					0	0	0			REV__nc|ENSG00000170703|Q8N841-2|TTLL6	REV__nc|ENSG00000170703|Q8N841-2|TTLL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.77142333984375	2	444.22382	886.433086	-0.12204	-5.4215E-05	-2.3697	-0.0010527	-2.4918	-0.0011069	444.222456986216	32.397	0.25649	32.161	32.042	32.299	-0.23666					6	5	2	0	0	0	0.027866	1	2236	2236		73.975	8.1716	1	20402	+		55142	26498	38488	38552	60424	60424					-0.014673011855620643
NNMLDKVNE	9	Unmodified	_NNMLDKVNE_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7904663085938	2	538.755681	1075.49681	0.18627	0.00010035	3.2756	0.0017648	3.4619	0.0018651	538.7572613784816	59.3	0.75575	59.118	58.831	59.587	-0.18134					31	17	2	0	0	0	0.024397	1	6514	6514		39.253	6.4404	1	445170			55143	2385;14084	38489	38553	60425	60425					-0.037919855391237434
NNMLDKVNE	9	Unmodified	_NNMLDKVNE_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.755681	1075.49681	0.34459	0.00018565	3.8652	0.0020824	4.2098	0.0022681	538.7576399260377	59.102	0.43998	59.102	58.93	59.37	0	-0.044613	0.00010528	NaN	39.253	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494150			55144	2385;14084	38489	38553							-0.037919855391237434
NNMLDKVNE	9	Unmodified	_NNMLDKVNE_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.755681	1075.49681	1.0509	0.00056617	3.1546	0.0016995	4.2055	0.0022657	538.7574135369869	59.356	0.39541	59.155	58.923	59.318	-0.20016	0.0090479	-0.00066048	NaN	39.253	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565820			55145	2385;14084	38489	38553							-0.037919855391237434
NNMLDKVNE	9	Unmodified	_NNMLDKVNE_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.755681	1075.49681	-0.30586	-0.00016479	4.4826	0.002415	4.1768	0.0022503	538.7579423911016	58.968	0.39185	59.053	58.849	59.241	0.085682	-0.093114	0.00077053	NaN	39.253	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	561050			55146	2385;14084	38489	38553							-0.037919855391237434
NNMLDKVNE	9	Unmodified	_NNMLDKVNE_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1;ENST00000426382.2_1_X:67290686-67290992:-|nuORF	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.755681	1075.49681	-0.5233	-0.00028193	3.9516	0.002129	3.4284	0.001847	538.7577017085221	59.472	0.90686	59.224	58.93	59.836	-0.24842	0.077139	0.0001984	NaN	39.253	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404660			55147	2385;14084	38489	38553							-0.037919855391237434
NNMPKDHPD	9	Unmodified	_NNMPKDHPD_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2547607421875	2	534.232373	1066.45019	-0.72496	-0.0003873	-1.282	-0.00068488	-2.0069	-0.0010722	534.2318291265873	53.092	0.44818	52.945	52.72	53.168	-0.14723					12	11	2	0	0	0	0.024477	1	5662	5662		20.947	0.4651	1	92489			55148	5194	38490	38554	60426	60426					-0.08037425370412166
NNMPREPSSEV	11	Unmodified	_NNMPREPSSEV_					0	0	0			REV__TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	REV__TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.220703125	3	420.527676	1258.5612	-0.23659	-9.9494E-05	-1.4869	-0.00062529	-1.7235	-0.00072478	420.52694238192817	56.422	0.35748	56.266	56.135	56.492	-0.15656					10	8	2	0	0	0	0.02477	1	6133	6133		17.167	0	1	57341	+		55149	37720	38491	38555	60427	60427					-0.05773830452972106
NNMVLVKL	8	Unmodified	_NNMVLVKL_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2875061035156	2	465.775688	929.536823	0.12312	5.7348E-05	4.3137	0.0020092	4.4368	0.0020665	465.77773056615985	94.193	1.0298	94.199	93.85	94.88	0.0059891					55	24	4	0	0	0	0.027866	1	11863	11863		31.955	1.4512	1	775240			55150	3254	38492	38556	60428	60428					0.06923605922111165
NNNFVNFGV	9	Unmodified	_NNNFVNFGV_					0	0	0		ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	ENSG00000183072|ENST00000329198|NKX2-5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.775146484375	2	512.745973	1023.47739	-0.30089	-0.00015428	-2.7109	-0.00139	-3.0118	-0.0015443	513.2468726385855	47.688	0.25714	47.591	47.485	47.743	-0.097553					12	6	3	0	0	0	0.024412	1	4674	4674		40.573	11.423	1	161740			55151	9196	38493	38557	60429	60429					-0.033405737677071556
NNNIMLHMIT	10	Unmodified	_NNNIMLHMIT_					0	0	0			REV__nc|ENSG00000260357|Q6PK57|DNM1P34	REV__nc|ENSG00000260357|Q6PK57|DNM1P34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.2474365234375	3	400.866976	1199.5791	2.5943	0.00104	1.7991	0.0007212	4.3934	0.0017612	400.8675042080562	32.451	0.86936	32.513	32.278	33.147	0.062885					40	22	3	0	0	0	0.03519	1	2256	2256		20.837	0	1	177810	+		55152	37184	38494	38558	60430	60430					-0.012707867318340504
NNNKLTVL	8	Unmodified	_NNNKLTVL_					0	0	0		ENSG00000180979|ENST00000397130|LRRC57	ENSG00000180979|ENST00000397130|LRRC57	ENSG00000180979|ENST00000397130|LRRC57	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.26654052734375	2	458.266542	914.51853	-1.1953	-0.00054775	1.263	0.00057881	0.067764	3.1054E-05	458.26695720914114	28.625	0.97029	28.38	28.041	29.011	-0.24524					54	22	4	0	0	0	0.56067	1	1693	1693		79.939	8.6435	1	1818100			55153	9013	38495	38559	60431	60431					0.05785187271737868
NNNKNSDFCA	10	Unmodified	_NNNKNSDFCA_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8016967773438	2	563.732737	1125.45092	-0.82705	-0.00046624	-0.42668	-0.00024053	-1.2537	-0.00070677	564.2346262883879	31.817	0.24049	31.886	31.686	31.927	0.06896					6	5	2	0	0	0	0.03519	1	2111	2111		37.159	5.6293	1	31590			55154	5020	38496	38560	60432	60432					-0.10678630721349691
NNNKSIKSH	9	Unmodified	_NNNKSIKSH_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2382202148438	2	521.275429	1040.53631	0.21922	0.00011427	-2.8475	-0.0014843	-2.6283	-0.0013701	521.2732208092996	63.972	0.93066	63.78	63.263	64.194	-0.19243					43	23	3	0	0	0	0.024427	1	7225	7225		19.997	7.7899	1	981130	+		55155	22475	38497	38561	60433	60433					0.0176590252663118
NNNKSIKSH	9	Unmodified	_NNNKSIKSH_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.275429	1040.53631	-0.067198	-3.5028E-05	-3.3925	-0.0017684	-3.4597	-0.0018035	521.2734605457731	63.941	0.72217	63.689	63.372	64.094	-0.25141	-0.054642	0.00068243	NaN	19.997	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897990	+		55156	22475	38497	38561							0.0176590252663118
NNNKSIKSH	9	Unmodified	_NNNKSIKSH_					0	0	0			REV__ENSG00000119685|ENST00000298832|TTLL5	REV__ENSG00000119685|ENST00000298832|TTLL5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.275429	1040.53631	1.5109	0.00078758	-5.2863	-0.0027556	-3.7754	-0.001968	521.2726394895909	63.731	0.75056	63.785	63.447	64.197	0.054104	0.040785	-0.001292	NaN	19.997	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	725400	+		55157	22475	38497	38561							0.0176590252663118
NNNLLPLSI	9	Unmodified	_NNNLLPLSI_					0	0	0			REV__JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	REV__JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.28240966796875	2	499.287474	996.560395	-0.029716	-1.4837E-05	2.4858	0.0012411	2.4561	0.0012263	499.2886971772053	102.74	0.5615	102.61	102.19	102.75	-0.12673					16	12	2	0	0	0	0.024495	1	12761	12761		26.693	4.1133	1	34161	+		55158	24837	38498	38562	60434	60434					0.06197742960296182
NNNLNPMFL	9	Unmodified	_NNNLNPMFL_					0	0	0		ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.8631591796875	2	538.763309	1075.51206	-1.2371	-0.00066649	1.5624	0.00084174	0.32529	0.00017525	539.265533460954	80.131	0.25285	80.152	80.021	80.274	0.021439					7	5	2	0	0	0	0.024436	1	9883	9883		47.916	12.715	1	50637			55159	10820	38499	38563	60435	60435					-0.02267073951270504
NNNLRHTD	8	Unmodified	_NNNLRHTD_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.79705810546875	2	492.236304	982.458055	0.54541	0.00026847	-3.4575	-0.0017019	-2.9121	-0.0014334	492.23435374314096	97.086	1.2838	97.095	96.399	97.683	0.0089035					56	28	3	0	0	0	0.027866	1	12394	12394		34.173	0.65696	1	117010			55160	4878	38500	38564	60436	60436					-0.033875300586146295
NNNQSNDFT	9	Unmodified	_NNNQSNDFT_					0	0	0			REV__nc|ENSG00000152520|Q58A45-4|PAN3	REV__nc|ENSG00000152520|Q58A45-4|PAN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7695922851562	2	527.215234	1052.41592	-0.89315	-0.00047088	0.72265	0.00038099	-0.1705	-8.9892E-05	527.21553393182	53.284	0.94748	53.284	52.634	53.582	0					35	25	2	0	0	0	0.023181	1	5771	5771		60.972	0	1	362550	+		55161	24849	38501	38565	60437	60437					-0.10819550257679111
NNNQSNDFT	9	Unmodified	_NNNQSNDFT_					0	0	0			REV__nc|ENSG00000152520|Q58A45-4|PAN3	REV__nc|ENSG00000152520|Q58A45-4|PAN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7694702148438	2	527.215234	1052.41592	-1.0405	-0.00054855	1.2437	0.00065572	0.20327	0.00010717	527.2157483437422	53.389	1.0329	53.241	52.607	53.639	-0.14723					41	27	3	0	0	0	0.024292	1	5768	5768		68.787	16.488	1	378490	+		55162	24849	38501	38565	60438	60438					-0.10819550257679111
NNNTAQKRQ	9	Unmodified	_NNNTAQKRQ_					0	0	0			REV__ENSG00000121039|ENST00000240285|RDH10	REV__ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.2784423828125	2	537.275961	1072.53737	-0.88214	-0.00047395	4.3543	0.0023395	3.4721	0.0018655	537.2781691879854	29.787	0.71881	29.542	29.142	29.861	-0.24524					48	16	4	0	0	0	0.5973	1	1855	1855		52.937	1.4089	1	964450	+		55163	22574	38502	38566	60439	60439					0.004001168955255707
NNNTAQKRQ	9	Unmodified	_NNNTAQKRQ_					0	0	0			REV__ENSG00000121039|ENST00000240285|RDH10	REV__ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.2783813476562	2	537.275961	1072.53737	-1.041	-0.00055932	4.4777	0.0024058	3.4367	0.0018465	537.278198481273	29.652	0.8891	29.479	29.113	30.002	-0.17258					53	20	4	0	0	0	0.32811	1	1830	1830		71.877	4.3838	1	1154900	+		55164	22574	38502	38566	60440	60440					0.004001168955255707
NNNTAQKRQ	9	Unmodified	_NNNTAQKRQ_					0	0	0			REV__ENSG00000121039|ENST00000240285|RDH10	REV__ENSG00000121039|ENST00000240285|RDH10	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	537.275961	1072.53737	-0.88214	-0.00047395	4.3543	0.0023395	3.4721	0.0018655	537.2781691879854	29.787	0.71881	29.542	29.142	29.861	-0.24524	0.043449	5.2985E-05	NaN	71.877	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	964450	+		55165	22574	38502	38566							0.004001168955255707
NNNTAQKRQ	9	Unmodified	_NNNTAQKRQ_					0	0	0			REV__ENSG00000121039|ENST00000240285|RDH10	REV__ENSG00000121039|ENST00000240285|RDH10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.275961	1072.53737	-0.83452	-0.00044837	4.1303	0.0022191	3.2958	0.0017708	537.278071004461	29.624	0.87946	29.475	29.044	29.923	-0.14952	-0.023973	-0.00018765	NaN	71.877	67	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1222100	+		55166	22574	38502	38566							0.004001168955255707
NNNTLITLI	9	Unmodified	_NNNTLITLI_					0	0	0			REV__ENST00000398117.1_1_18:60986101-60986167:-|nuORF	REV__ENST00000398117.1_1_18:60986101-60986167:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.76837158203125	2	508.292756	1014.57096	-0.66929	-0.00034019	0.48057	0.00024427	-0.18872	-9.5924E-05	508.2928387906936	23.426	0.66173	23.366	22.981	23.643	-0.060862					25	15	2	0	0	0	0.024539	1	862	862		35.618	7.736	1	268410	+		55167	31797	38503	38567	60441	60441					0.06425725614712974
NNNVLLTKL	9	Unmodified	_NNNVLLTKL_					0	0	0			REV__ENST00000558020.1_1_15:101828356-101835383:-|nuORF	REV__ENST00000558020.1_1_15:101828356-101835383:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.8087158203125	2	514.808574	1027.60259	-0.25407	-0.0001308	0.44366	0.0002284	0.18959	9.7605E-05	514.8084644994826	67.377	1.0957	67.377	66.968	68.064	0					69	27	4	0	0	0	0.16638	1	8057	8057		95.815	9.9533	1	9407900	+		55168	23242	38504	38568	60442	60442					0.08989718368638933
NNNVLLTKL	9	Unmodified	_NNNVLLTKL_					0	0	0			REV__ENST00000558020.1_1_15:101828356-101835383:-|nuORF	REV__ENST00000558020.1_1_15:101828356-101835383:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8087768554688	2	514.808574	1027.60259	-0.050579	-2.6039E-05	-0.33386	-0.00017187	-0.38444	-0.00019791	514.8083690975062	67.769	1.379	67.481	66.992	68.371	-0.28834					71	34	5	0	0	0	0.077175	1	8063	8063		118.74	0.93201	1	8111000	+		55169	23242	38504	38568	60443	60443					0.08989718368638933
NNNYSAVLLE	10	Unmodified	_NNNYSAVLLE_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2678833007812	2	568.782753	1135.55095	0.48985	0.00027862	0.55356	0.00031486	1.0434	0.00059347	568.7842944029674	19.127	0.44563	18.966	18.787	19.233	-0.1608					13	8	2	0	0	0	0.03519	1	367	367		27.882	13.745	1	33425	+		55170	20590	38505	38569	60444	60444					-0.011400701159118398
NNPAMLQVL	9	Unmodified	_NNPAMLQVL_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7870788574219	2	500.268227	998.521901	-1.6284	-0.00081466	-0.48275	-0.00024151	-2.1112	-0.0010562	500.26733005396426	60.191	0.85843	60.27	59.826	60.684	0.078888					60	22	4	0	0	0	0.024436	1	6842	6842		30.504	8.5438	1	1505500			55171	6944	38506	38570	60445	60445					0.02258114054120597
NNPANRRTT	9	Unmodified	_NNPANRRTT_					0	0	0		ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8126831054688	2	522.270678	1042.5268	-0.40228	-0.0002101	3.2841	0.0017152	2.8818	0.0015051	522.272427459941	41.147	0.59682	41.147	40.835	41.432	0					24	16	2	0	0	0	0.024477	1	3686	3686		14.865	0	1	222790			55172	785	38507	38571	60446	60446					0.007241342410907237
NNQIRKQLH	9	Unmodified	_NNQIRKQLH_					0	0	0			REV__nc|ENSG00000104047|Q8N5C7-2|DTWD1	REV__nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	576.3529052734375	2	575.825621	1149.63669	-1.5785	-0.00090894	-2.203	-0.0012685	-3.7815	-0.0021775	575.8241566308503	44.822	1.5709	44.822	44.519	46.09	0					98	45	3	0	0	0	0.024294	1	4280	4280		45.952	16.802	1	2051300	+		55173	21413	38508	38572	60447	60447					0.06785559580271183
NNQKFPCSIS	10	Unmodified	_NNQKFPCSIS_					0	0	0		ENSG00000118922|ENST00000703967|KLF12	ENSG00000118922|ENST00000703967|KLF12	ENSG00000118922|ENST00000703967|KLF12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.7880249023438	2	569.271498	1136.52844	-0.34045	-0.00019381	-3.8152	-0.0021719	-4.1557	-0.0023657	569.7717528360438	45.217	0.19108	45.006	44.831	45.022	-0.21109					5	4	2	0	0	0	0.03519	1	4252	4252		44.377	18.803	1	39104			55174	3709	38509	38573	60448	60448					-0.03435992785171038
NNQLYLKQL	9	Unmodified	_NNQLYLKQL_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.2684936523438	2	567.319306	1132.62406	-0.568	-0.00032223	0.74664	0.00042358	0.17864	0.00010135	567.3196416481017	54.947	0.3227	54.947	54.794	55.116	0					10	8	2	0	0	0	0.024541	1	6028	6028		17.365	0	1	67439	+		55175	26577	38510	38574	60449	60449					0.06305103397380662
NNQVIAQT	8	Unmodified	_NNQVIAQT_					0	0	0			REV__CON__P00711	REV__CON__P00711	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.77130126953125	2	444.232699	886.450845	-0.05945	-2.641E-05	-2.0841	-0.00092582	-2.1435	-0.00095223	444.23182305836355	32.436	0.20175	32.279	32.121	32.323	-0.15772					6	4	2	0	0	0	0.027866	1	2224	2224		71.296	0	1	36422	+	+	55176	19533	38511	38575	60450	60450					0.003077373409610118
NNQYIPKP	8	Unmodified	_NNQYIPKP_					0	0	0		ENST00000497604.1_1_2:106710484-106717684:-|nuORF;nc|ENSG00000115652|Q8NBZ7-3|UXS1;nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1;ENST00000473338.1_1_2:106710484-106713932:-|nuORF	ENST00000497604.1_1_2:106710484-106717684:-|nuORF	ENST00000497604.1_1_2:106710484-106717684:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.249755859375	2	487.258717	972.50288	-1.1989	-0.00058417	-2.4865	-0.0012116	-3.6854	-0.0017957	487.25731123056556	28.982	0.65181	28.982	28.571	29.223	0					23	15	2	0	0	0	0.027866	1	1729	1729		40.573	0	1	466060			55177	3477	38512	38576	60451	60451					0.015529007547115725
NNRATELFKI	10	Unmodified	_NNRATELFKI_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-7|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-7|TTC39B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	602.7887573242188	2	603.335487	1204.65642	-1.7998	-0.0010859	4.0813	0.0024624	2.2815	0.0013765	603.3372897625468	40.623	0.30659	40.646	40.424	40.73	0.023006					11	8	2	0	0	0	0.03519	1	3541	3541		29.17	2.1227	1	150510	+		55178	24995	38513	38577	60452	60452					0.06227890800369096
NNREVAKR	8	Unmodified	_NNREVAKR_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2587585449219	2	493.778139	985.541725	0.4192	0.00020699	-2.0541	-0.0010143	-1.6349	-0.00080729	493.77658314908024	41.596	0.18069	41.596	41.542	41.722	0					6	4	2	0	0	0	0.027866	1	3749	3749		60.972	16.595	1	239470			55179	4600	38514	38578	60453	60453					0.04837626109087978
NNRFLVVS	8	Unmodified	_NNRFLVVS_					0	0	0			REV__ENST00000447301.2_1_X:63843342-63843906:+|nuORF	REV__ENST00000447301.2_1_X:63843342-63843906:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.2701721191406	2	474.766709	947.518865	-0.68188	-0.00032373	1.1118	0.00052785	0.42994	0.00020412	474.7671835086455	24.693	1.1962	24.645	23.783	24.98	-0.047148					53	26	4	0	0	0	0.027866	1	999	999		57.811	11.859	1	516600	+		55180	32644	38515	38579	60454	60454					0.04300606991614586
NNRGIAAH	8	Unmodified	_NNRGIAAH_					0	0	0		nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2648010253906	2	426.725375	851.436198	0.062328	2.6597E-05	3.8502	0.001643	3.9126	0.0016696	426.7268103488405	53.717	1.5769	53.813	53.266	54.843	0.095669					59	44	2	0	0	0	0.027866	1	5818	5818		20.482	1.1219	1	442030			55181	5654	38516	38580	60455	60455					0.004537099834578839
NNRHPNIK	8	Unmodified	_NNRHPNIK_					0	0	0		ENSG00000169607|ENST00000302450|CKAP2L;nc|ENSG00000169607|Q8IYA6-3|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	ENSG00000169607|ENST00000302450|CKAP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.7638244628906	2	496.772857	991.531161	-0.38403	-0.00019077	-3.2229	-0.001601	-3.6069	-0.0017918	496.7705578950606	42.516	0.48424	42.284	41.937	42.422	-0.23186					16	12	3	0	0	0	0.027866	1	3820	3820		24.203	2.5004	1	266140			55182	7956	38517	38581	60456	60456					0.035056434546504534
NNRINRET	8	Unmodified	_NNRINRET_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A;REV__ENSG00000273079|ENST00000609686|GRIN2B	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.32861328125	2	508.765229	1015.5159	-0.72406	-0.00036837	-3.1391	-0.0015971	-3.8631	-0.0019654	509.2646916365255	33.578	0.68204	33.578	33.018	33.7	0					32	18	3	0	0	0	0.027866	1	2451	2451		24.203	0	1	163510	+		55183	27574;29173	38518	38582	60457	60457					0.008767318668105872
NNRINRET	8	Unmodified	_NNRINRET_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A;REV__ENSG00000273079|ENST00000609686|GRIN2B	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3286437988281	2	508.765229	1015.5159	-0.7395	-0.00037623	-3.847	-0.0019572	-4.5865	-0.0023334	509.2646265391378	33.372	0.45405	33.379	33.08	33.534	0.0066261					26	12	3	0	0	0	0.027866	1	2411	2411		12.207	0	1	153130	+		55184	27574;29173	38518	38582	60458	60458					0.008767318668105872
NNRIQLSL	8	Unmodified	_NNRIQLSL_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MSMS	OPSCC_40_ClassI_Rep-1	4	479.2771301269531	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.529	1	86.342	85.842	86.842	-0.18696								0	0	0	0.78291	1	10497	10497		35.618	1.4457	1		+		55185	23960	38519	38583	60459	60459					0.06031992020336929
NNRKSFRLRRR	11	Unmodified	_NNRKSFRLRRR_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENSG00000078596|ENST00000373298|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2942199707031	3	501.634424	1501.88144	0.29109	0.00014602	-0.36562	-0.00018341	-0.07453	-3.7387E-05	501.6341753893211	102.18	1.242	102.17	101.62	102.86	-0.0054474					54	28	2	0	0	0	0.024879	1	13024	13024		5.4129	0	1	274680			55186	1639	38520	38584	60460	60460					0.15057858113891598
NNRLIKLSQ	9	Unmodified	_NNRLIKLSQ_					0	0	0		ENST00000485407.1_1_13:39616195-39618420:+|nuORF;ENSG00000188811|ENST00000379600|NHLRC3	ENST00000485407.1_1_13:39616195-39618420:+|nuORF	ENST00000485407.1_1_13:39616195-39618420:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.297607421875	2	543.324922	1084.63529	-0.53292	-0.00028955	-3.9573	-0.0021501	-4.4902	-0.0024396	543.322517938559	73.655	0.83517	73.39	72.852	73.687	-0.26479					41	20	3	0	0	0	0.024539	1	8598	8598		5.5578	0	1	384290			55187	9754	38521	38585	60461	60461					0.09635925491511443
NNRQVTLE	8	Unmodified	_NNRQVTLE_					0	0	0		ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.24163818359375	2	487.256705	972.498858	0.22845	0.00011131	4.3349	0.0021122	4.5633	0.0022235	487.2586290551224	52.477	0.58565	52.33	52.021	52.607	-0.14724					26	14	2	0	0	0	0.027866	1	5591	5591		30.504	0	1	240780			55188	5507	38522	38586	60462	60462					0.011508112610044918
NNRVWYMDSY	10	Unmodified	_NNRVWYMDSY_					0	0	0		nc|ENSG00000118733|Q96PB7-5|OLFM3;ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3	nc|ENSG00000118733|Q96PB7-5|OLFM3	nc|ENSG00000118733|Q96PB7-5|OLFM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2615966796875	3	449.8644	1346.57137	-0.31871	-0.00014338	2.199	0.00098925	1.8803	0.00084587	449.8653916194155	31.284	0.4555	31.099	30.905	31.36	-0.18503					16	11	2	0	0	0	0.03519	1	2077	2077		16.007	2.4988	1	86843			55189	3702	38523	38587	60463	60463					-0.08805222727733053
NNRWRRRRREQ	11	Unmodified	_NNRWRRRRREQ_					0	0	0		ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	ENST00000578774.1_1_17:38517261-38520175:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5873718261719	4	407.478169	1625.88357	-0.26782	-0.00010913	3.7197	0.0015157	3.4519	0.0014066	407.72977718498873	25.751	0.33367	25.524	25.311	25.645	-0.22683					11	7	2	0	0	0	0.024895	1	1261	1261		0.99789	0	1	34059			55190	17133	38524	38588	60464	60464					0.09566286851691075
NNSGAVQPGD	10	Unmodified	_NNSGAVQPGD_					0	0	0			REV__ENSG00000152591|ENST00000651931|DSPP	REV__ENSG00000152591|ENST00000651931|DSPP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2796936035156	2	479.71487	957.415188	1.5125	0.00072556	-4.0435	-0.0019397	-2.531	-0.0012142	479.71282712475954	59.289	0.48943	59.289	59.07	59.559	0					20	12	2	0	0	0	0.03519	1	6733	6733		67.494	9.6824	1	166830	+		55191	24854	38525	38589	60465	60465					-0.06522344906704802
NNSKFPLDN	9	Unmodified	_NNSKFPLDN_					0	0	0		ENSG00000100814|ENST00000358932|CCNB1IP1	ENSG00000100814|ENST00000358932|CCNB1IP1	ENSG00000100814|ENST00000358932|CCNB1IP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2882080078125	2	524.756538	1047.49852	-0.79947	-0.00041953	-1.4414	-0.00075639	-2.2409	-0.0011759	524.7546319469213	27.748	0.49123	27.58	27.317	27.808	-0.16816					11	9	2	0	0	0	0.023473	1	1542	1542		85.161	48.714	1	144080			55192	2249	38526	38590	60466	60466					-0.023326084588461526
NNSLGLLIFV	10	Unmodified	_NNSLGLLIFV_					0	0	0			REV__ENSG00000198678|ENST00000328207|OR5BS1P	REV__ENSG00000198678|ENST00000328207|OR5BS1P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.31640625	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0992	1	10519	10519		32.812	1.2826	1	5204600	+		55193	28448	38527	38591	60467	60467					0.08222889028479585
NNSLNIKKL	9	Unmodified	_NNSLNIKKL_					0	0	0			REV__nc|ENSG00000187122|O75093-2|SLIT1	REV__nc|ENSG00000187122|O75093-2|SLIT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3032836914062	2	522.314023	1042.61349	-0.65363	-0.0003414	-0.17949	-9.3752E-05	-0.83312	-0.00043515	522.3138875739076	30.085	0.20883	29.841	29.696	29.905	-0.24415					6	4	2	0	0	0	0.024427	1	1897	1897		42.396	3.59	1	49536	+		55194	27917	38528	38592	60468	60468					0.09389120742957857
NNSPSTSPETT	11	Unmodified	_NNSPSTSPETT_					0	0	0			REV__ENSG00000196581|ENST00000378191|AJAP1	REV__ENSG00000196581|ENST00000378191|AJAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7546997070312	2	567.749107	1133.48366	-0.20208	-0.00011473	1.7355	0.00098533	1.5334	0.00087059	568.2520092167524	50.51	0.36552	50.361	50.162	50.528	-0.14916					22	10	4	0	0	0	0.024804	1	5278	5278		47.96	26	1	277290	+		55195	28199	38529	38593	60469	60469					-0.07774145117514308
NNSVLLEIL	9	Unmodified	_NNSVLLEIL_					0	0	0			REV__AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|16|2|anti-sense	REV__AluJr_dup29921|chr7:13104572-13104833:+|1.627906188448602|0.0397510893633695|5.36|504.0|16|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.77850341796875	2	507.795132	1013.57571	-0.42925	-0.00021797	-0.058303	-2.9606E-05	-0.48755	-0.00024758	507.7950823794114	78.804	0.87677	78.804	78.447	79.323	0					40	20	3	0	0	0	0.024374	1	9746	9746		49.442	3.4896	1	1250600	+		55196	19115	38530	38594	60470	60470					0.06946609757483202
NNSYAVII	8	Unmodified	_NNSYAVII_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.2398376464844	2	447.239993	892.465432	-0.043021	-1.9241E-05	-0.52919	-0.00023667	-0.57221	-0.00025592	447.2397669443325	54.553	1.6237	54.308	53.98	55.604	-0.2453					126	46	5	0	0	0	0.58212	1	5773	5773		77.944	6.5659	1	33233000			55197	722	38531	38595	60471	60471					0.01489809489100935
NNTDCSNLHSK	11	Unmodified	_NNTDCSNLHSK_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	616.3251953125	2	616.769851	1231.52515	-0.53455	-0.00032969	-4.4451	-0.0027416	-4.9796	-0.0030713	616.7671950450715	57.663	0.66966	57.473	57.042	57.712	-0.19017					29	13	3	0	0	0	0.024748	1	6287	6287		37.508	12.989	1	314220	+		55198	21856	38532	38596	60472	60472					-0.0813528762982969
NNTKLIQH	8	Unmodified	_NNTKLIQH_					0	0	0		nc|ENSG00000167377|P17027-2|ZNF23;nc|ENSG00000167377|P17027|ZNF23;ENSG00000167377|ENST00000647773|ZNF23	nc|ENSG00000167377|P17027-2|ZNF23	nc|ENSG00000167377|P17027-2|ZNF23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2702331542969	2	484.269616	966.524678	-0.34493	-0.00016704	0.21914	0.00010612	-0.12578	-6.0913E-05	484.2695766670706	31.309	0.70725	31.321	30.956	31.663	0.011799					59	16	5	0	0	0	0.77775	1	2081	2081		60.972	5.4677	1	3229500			55199	7679	38533	38597	60473	60473					0.04007705503283887
NNTKQLAQI	9	Unmodified	_NNTKQLAQI_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2882080078125	2	515.288005	1028.56146	-0.11251	-5.7977E-05	0.2165	0.00011156	0.10398	5.3581E-05	515.2878389684613	40.259	1.3129	40.034	39.696	41.009	-0.225					100	34	6	0	0	0	0.56934	1	3472	3472		54.776	1.4249	1	20784000	+		55200	23180	38534	38598	60474	60474					0.04831957329179204
NNTRPKLPR	9	Unmodified	_NNTRPKLPR_					0	0	0			REV__ENSG00000165125|ENST00000359396|TRPV6	REV__ENSG00000165125|ENST00000359396|TRPV6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.327392578125	2	548.322714	1094.63087	-0.60722	-0.00033296	-0.078374	-4.2974E-05	-0.6856	-0.00037593	548.3224326390588	42.513	0.20592	42.381	42.285	42.491	-0.13219					8	5	2	0	0	0	0.024261	1	3880	3880		45.972	6.7194	1	1233600	+		55201	25843	38535	38599	60475	60475					0.08734461068593191
NNVDTLTIN	9	Unmodified	_NNVDTLTIN_					0	0	0			REV__ENST00000505045.1_1_5:26903562-26988455:-|nuORF	REV__ENST00000505045.1_1_5:26903562-26988455:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7945861816406	2	502.256371	1002.49819	-0.10257	-5.1517E-05	-3.0352	-0.0015245	-3.1378	-0.001576	502.2551407255187	50.4	0.63887	50.249	49.854	50.493	-0.1512					46	18	4	0	0	0	0.022587	1	5231	5231		84.916	0	1	365520	+		55202	19284	38536	38600	60476	60476					-0.0029602817871818843
NNVFKSEII	9	Unmodified	_NNVFKSEII_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.2938232421875	2	532.292756	1062.57096	-0.61387	-0.00032676	0.41463	0.00022071	-0.19924	-0.00010605	532.2929314404925	77.787	0.86621	77.802	77.449	78.315	0.015907					35	20	2	0	0	0	0.5973	1	9552	9552		52.937	2.9122	1	2472300			55203	10490	38537	38601	60477	60477					0.04217725614716983
NNVGGQIEVW	10	Unmodified	_NNVGGQIEVW_					0	0	0		HERVH-int_dup4904|chr13:109269043-109269447:+|2.7681475886798586|0.2441911952543529|3.5|485.0|13|1|anti-sense	HERVH-int_dup4904|chr13:109269043-109269447:+|2.7681475886798586|0.2441911952543529|3.5|485.0|13|1|anti-sense	HERVH-int_dup4904|chr13:109269043-109269447:+|2.7681475886798586|0.2441911952543529|3.5|485.0|13|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2431030273438	2	558.277638	1114.54072	-0.6441	-0.00035959	0.13408	7.4856E-05	-0.51002	-0.00028473	558.27748684627	69.726	1.2154	69.459	68.7	69.916	-0.26725					37	28	2	0	0	0	0.03519	1	8116	8116		51.335	0.14276	1	125880			55204	17721	38538	38602	60478	60478					-0.01196633050494711
NNVLRYFDY	9	Unmodified	_NNVLRYFDY_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.8659362792969	3	401.864617	1202.57202	-0.1026	-4.1229E-05	2.7802	0.0011173	2.6776	0.001076	401.8656134399337	44.01	1.8439	43.906	43.507	45.351	-0.10468					130	49	4	0	0	0	0.94779	1	4069	4069		29.17	1.0886	1	3265700			55205	202	38539	38603	60479	60479					-0.021160600163966592
NNVNPKSTTI	10	Unmodified	_NNVNPKSTTI_					0	0	0		ENST00000250559.13_1_12:69053340-69053418:+|nuORF	ENST00000250559.13_1_12:69053340-69053418:+|nuORF	ENST00000250559.13_1_12:69053340-69053418:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.3328857421875	2	544.290745	1086.56694	0.19014	0.00010349	3.4469	0.0018761	3.637	0.0019796	544.2924270030863	97.229	1.0214	97.229	96.793	97.815	-3.0518E-05					59	22	4	0	0	0	0.03519	1	12281	12281		71.877	24.22	1	714980			55206	11348	38540	38604	60480	60480					0.027116361209891693
NNWALKFSII	10	Unmodified	_NNWALKFSII_					0	0	0		ENST00000582147.1_1_18:334691-500598:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:334691-500598:-|nuORF	ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.9035339355469	3	402.560758	1204.66044	0.23454	9.4415E-05	-0.48515	-0.0001953	-0.25061	-0.00010089	402.56057995384447	31.099	0.53205	30.858	30.541	31.073	-0.24109					24	12	3	0	0	0	0.03519	1	1999	1999		53.089	33.058	1	167080			55207	6657	38541	38605	60481	60481					0.06629980294087545
NNWVVIVKHL	10	Unmodified	_NNWVVIVKHL_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3562622070312	2	611.358765	1220.70298	-0.32068	-0.00019605	-3.9143	-0.002393	-4.2349	-0.0025891	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.0781	1	11926	11926		35.618	5.3006	1	11218000	+		55208	25475	38542	38606	60482	60482					0.10145375422325742
NNWVVIVKHL	10	Unmodified	_NNWVVIVKHL_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3558349609375	2	611.358765	1220.70298	0.14541	8.89E-05	-4.3258	-0.0026446	-4.1804	-0.0025557	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.1329	1	11614	11614		27.882	1.1893	1	13233000	+		55209	25475	38542	38606	60483	60483					0.10145375422325742
NNYEMFPRCDI	11	Unmodified	_NNYEMFPRCDI_					0	0	0			REV__DUSP10|p.K185N|1|0.59|ENSG00000143507|chr1:221739190-221739190|C/A|missense_variant	REV__DUSP10|p.K185N|1|0.59|ENSG00000143507|chr1:221739190-221739190|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.9282531738281	3	467.869045	1400.58531	-0.41479	-0.00019407	-3.1878	-0.0014915	-3.6026	-0.0016856	467.86756489385186	23.989	0.21492	23.989	23.908	24.123	0					8	4	2	0	0	0	0.024734	1	1016	1016		27.644	0	1	31676	+		55210	19720	38543	38607	60484	60484					-0.09896313290960279
NNYLGLYTVI	10	Unmodified	_NNYLGLYTVI_					0	0	0			REV__nc|ENSG00000106100|Q9Y239-3|NOD1	REV__nc|ENSG00000106100|Q9Y239-3|NOD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.8377685546875	2	585.313689	1168.61282	-1.5081	-0.00088273	0.55554	0.00032516	-0.9526	-0.00055757	585.315160737959	53.087	0.71851	53.087	52.827	53.545	0					32	19	3	0	0	0	0.03519	1	5680	5680		54.776	0	1	202680	+		55211	21596	38544	38608	60485	60485					0.035262813032204576
NNYSAVLL	8	Unmodified	_NNYSAVLL_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.23980712890625	2	447.239993	892.465432	-0.41952	-0.00018763	-0.17843	-7.9801E-05	-0.59795	-0.00026743	447.23993290944435	54.411	1.9123	54.275	53.928	55.84	-0.13617					140	53	5	0	0	0	0.46709	3	5801	5776;5788;5801		88.643	0	1	35352000	+		55212	20590	38545	38609	60486;60487;60488	60488					0.01489809489100935
NNYSAVLL	8	Unmodified	_NNYSAVLL_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.2396240234375	2	447.239993	892.465432	-0.043021	-1.9241E-05	-0.52919	-0.00023667	-0.57221	-0.00025592	447.2397669443325	54.553	1.6237	54.308	53.98	55.604	-0.2453					126	46	5	0	0	0	0.40853	2	5819	5805;5819		96.048	0	1	33233000	+		55213	20590	38545	38609	60489;60490	60490					0.01489809489100935
NNYSAVLL	8	Unmodified	_NNYSAVLL_					0	0	0			REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	REV__nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.2402038574219	2	447.239993	892.465432	0.73582	0.00032909	-1.168	-0.00052237	-0.43218	-0.00019329	447.23946512203395	54.505	1.7715	54.299	53.947	55.718	-0.20613					121	48	4	0	0	0	0.52467	2	5807	5794;5807		83.287	0	1	30226000	+		55214	20590	38545	38609	60491;60492	60492					0.01489809489100935
NNYVPVQPP	9	Unmodified	_NNYVPVQPP_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7901611328125	2	514.263999	1026.51345	-0.081262	-4.179E-05	-3.6952	-0.0019003	-3.7764	-0.0019421	514.2618511338832	41.518	0.46462	41.518	41.258	41.722	0					25	12	3	0	0	0	0.024381	1	3717	3717		29.15	0	1	210890	+		55215	22403	38546	38610	60493	60493					0.001248834091484241
NNYVPVQPP	9	Unmodified	_NNYVPVQPP_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7902221679688	2	514.263999	1026.51345	-0.4	-0.0002057	-2.9159	-0.0014996	-3.3159	-0.0017053	514.2621548427229	41.564	0.45967	41.587	41.358	41.818	0.023003					27	12	3	0	0	0	0.024354	1	3672	3672		30.504	0	1	207580	+		55216	22403	38546	38610	60494	60494					0.001248834091484241
NNYYLNLD	8	Unmodified	_NNYYLNLD_					0	0	0			REV__ENSG00000159708|ENST00000329956|LRRC36	REV__ENSG00000159708|ENST00000329956|LRRC36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.334228515625	2	514.737814	1027.46108	-0.01688	-8.689E-06	2.9584	0.0015228	2.9415	0.0015141	514.7392689540194	49.805	0.66251	49.653	49.368	50.031	-0.1512					27	17	2	0	0	0	0.027866	1	5140	5140		7.1934	0	1	403990	+		55217	25270	38547	38611	60495	60495					-0.05155699724468832
NPADVTQTFN	10	Unmodified	_NPADVTQTFN_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3033447265625	2	553.759278	1105.504	-1.0305	-0.00057063	-2.8921	-0.0016015	-3.9226	-0.0021722	553.7575842519661	36.159	0.4459	36.159	35.924	36.37	0					24	12	3	0	0	0	0.03519	1	2877	2877		52.937	0	1	265440	+		55218	22385	38548	38612	60496	60496					-0.04452929667036187
NPAFWWIN	8	Unmodified	_NPAFWWIN_					0	0	0		ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant;nc|ENSG00000005187|Q53FZ2-2|ACSM3;ENSG00000005187|ENST00000289416|ACSM3	ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant	ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	524.255977	1046.4974	0.90318	0.0004735	2.3848	0.0012502	3.288	0.0017237	524.2575267464432	20.524	1.4167	20.329	19.509	20.926	-0.19577					44	28	2	0	0	0	0.027866	1	493	493		40.573	0	1	33238			55219	18	38549	38613	60497	60497					-0.02398778037104421
NPAGCKCVTKG	11	Unmodified	_NPAGCKCVTKG_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2874755859375	2	539.262619	1076.51068	-1.3975	-0.00075364	0.9776	0.00052718	-0.41994	-0.00022646	539.2632778751904	21.758	0.52882	21.829	21.499	22.028	0.071487					17	10	2	0	0	0	0.024731	1	620	620		35.152	4.8343	1	44529	+		55220	25914	38550	38614	60498	60498					-0.02451031311670704
NPAGNSKKI	9	Unmodified	_NPAGNSKKI_					0	0	0			REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1	REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.76409912109375	2	464.764166	927.513779	0.45236	0.00021024	-0.43432	-0.00020185	0.018046	8.3871E-06	464.76370340328424	21.65	0.66607	21.473	21.209	21.875	-0.17721					33	13	4	0	0	0	0.74711	1	701	701		42.864	2.0861	1	402430	+		55221	36603	38551	38615	60499	60499					0.047123031289856954
NPAHVSVK	8	Unmodified	_NPAHVSVK_					0	0	0		ENST00000464073.1_1_14:77101591-77101843:-|nuORF	ENST00000464073.1_1_14:77101591-77101843:-|nuORF	ENST00000464073.1_1_14:77101591-77101843:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.25653076171875	2	426.240327	850.466101	-1.0904	-0.00046478	1.6401	0.00069909	0.54973	0.00023432	426.24091645617807	35.339	0.76861	35.317	35.049	35.817	-0.021763					33	19	2	0	0	0	0.027866	1	2715	2715		23.042	11.531	1	473340			55222	14750	38552	38616	60500	60500					0.03488648928816929
NPAKELMA	8	Unmodified	_NPAKELMA_					0	0	0		ENSG00000139797|ENST00000267291|RNF113B	ENSG00000139797|ENST00000267291|RNF113B	ENSG00000139797|ENST00000267291|RNF113B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7747802734375	2	437.228571	872.442588	0.2638	0.00011534	-1.8279	-0.00079923	-1.5641	-0.00068389	437.2286940872332	90.204	0.27681	90.188	89.999	90.276	-0.016716					9	6	2	0	0	0	0.027866	1	11361	11361		25.45	1.2474	1	26853			55223	5368	38553	38617	60501	60501					0.0012646709998307415
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2776794433594	2	479.277441	956.540328	0.21198	0.0001016	0.12251	5.8716E-05	0.33449	0.00016032	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.89441	1	10377	10377		32.812	4.7309	1	4888300			55224	5808	38554	38618	60502	60502					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2776794433594	2	479.277441	956.540328	0.51465	0.00024666	-0.27369	-0.00013117	0.24097	0.00011549	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.96322	1	10354	10354		27.882	0	1	4752300			55225	5808	38554	38618	60503	60503					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MSMS	OPSCC_39_ClassI_Rep-2	2	479.277099609375	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.296	1	86.25	85.75	86.75	-0.045105								0	0	0	0.60292	1	10805	10805		39.253	3.6345	1				55226	5808	38554	38618	60504	60504					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.27752685546875	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.87448	2	10270	10234;10270		34.173	3.6795	1	4947400			55227	5808	38554	38618	60505;60506	60506					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27740478515625	2	479.277441	956.540328	0.63902	0.00030627	-0.86315	-0.00041369	-0.22414	-0.00010742	479.2771210125938	81.156	2.9484	80.92	79.122	82.071	-0.23574					188	70	3	0	0	0	0.67687	4	9717	9707;9717;9728;9752		47.657	5.2612	1	2107600			55228	5808	38554	38618	60507;60508;60509;60510	60508					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2774658203125	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.6504	3	10228	9997;10057;10228		49.442	8.6634	1	7774800			55229	5808	38554	38618	60511;60512;60513	60513					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2771301269531	2	479.277441	956.540328	0.1691	8.1046E-05	-0.42382	-0.00020313	-0.25472	-0.00012208	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.77768	1	9889	9889		40.778	5.1599	1	1990900			55230	5808	38554	38618	60514	60514					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27728271484375	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.87448	3	10029	9982;10029;10137		34.173	5.9224	1	7158600			55231	5808	38554	38618	60515;60516;60517	60516					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MSMS	OPSCC_40_ClassI_Rep-2	5	479.2774353027344	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.414	1	86.272	85.772	86.772	-0.14217								0	0	0	0.5792	1	10498	10498		42.396	0	1				55232	5808	38554	38618	60518	60518					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MSMS	OPSCC_40_ClassI_Rep-2	5	479.2776794433594	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.5	1	86.358	85.858	86.858	-0.14217								0	0	0	0.59141	1	10510	10510		40.778	6.6056	1				55233	5808	38554	38618	60519	60519					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27734375	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.50848	8	10014	9966;9978;10014;10062;10110;10134;10146;10182		58.782	16.386	1	7407200			55234	5808	38554	38618	60520;60521;60522;60523;60524;60525;60526;60527	60522					0.060319920203255606
NPAKRITAS	9	Unmodified	_NPAKRITAS_					0	0	0		nc|ENSG00000145349|Q13557-8|CAMK2D;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;CAMK2D|p.T254S|1|0.17|ENSG00000145349|chr4:113515127-113515127|G/C|missense_variant	nc|ENSG00000145349|Q13557-8|CAMK2D	nc|ENSG00000145349|Q13557-8|CAMK2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27813720703125	2	479.277441	956.540328	-0.050895	-2.4393E-05	0.92199	0.00044189	0.87109	0.0004175	479.2776228774827	96.341	2.321	96.184	95.4	97.721	-0.15646					118	52	5	0	0	0	0.80003	1	11931	11931		39.253	5.7599	1	1642300			55235	5808	38554	38618	60528	60528					0.060319920203255606
NPANTIRK	8	Unmodified	_NPANTIRK_					0	0	0		ENSG00000118985|ENST00000237853|ELL2	ENSG00000118985|ENST00000237853|ELL2	ENSG00000118985|ENST00000237853|ELL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2640686035156	2	457.264333	912.514114	0.3516	0.00016077	-0.33891	-0.00015497	0.012689	5.8023E-06	457.2640675136426	78.861	1.8585	78.607	77.998	79.857	-0.25471					112	43	5	0	0	0	1.0106	1	9430	9430		35.618	5.1146	1	1133100			55236	3716	38555	38619	60529	60529					0.05435722848869773
NPANTIRK	8	Unmodified	_NPANTIRK_					0	0	0		ENSG00000118985|ENST00000237853|ELL2	ENSG00000118985|ENST00000237853|ELL2	ENSG00000118985|ENST00000237853|ELL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2641906738281	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	1.043	1	9874	9874		30.504	5.0535	1	4140300			55237	3716	38555	38619	60530	60530					0.05435722848869773
NPAPKLGLLD	10	Unmodified	_NPAPKLGLLD_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.32421875	2	519.303124	1036.5917	0.32592	0.00016925	-0.87613	-0.00045498	-0.5502	-0.00028572	519.3026988584012	41.084	0.73885	40.961	40.725	41.464	-0.12317					39	19	3	0	0	0	0.03519	1	3691	3691		34.173	3.6689	1	741140	+		55238	23713	38556	38620	60531	60531					0.07486315994378856
NPAPPYLW	8	Unmodified	_NPAPPYLW_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2845764160156	2	479.245078	956.475603	0.061818	2.9626E-05	-3.4952	-0.0016751	-3.4334	-0.0016454	479.2431443636623	55.96	0.72935	55.804	55.554	56.284	-0.15601					38	19	3	0	0	0	0.027866	1	6149	6149		21.702	0	1	663160			55239	9695	38557	38621	60532	60532					-0.004375827856847536
NPAPVVLPGVL	11	Unmodified	_NPAPVVLPGVL_					0	0	0			REV__nc|ENSG00000138463|Q96SL1-2|SLC49A4;REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3287353515625	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	1.0238	1	12789	12789		31.53	6.0796	1	22988000	+		55240	33339;23859	38558	38622	60533	60533					0.10939479408148145
NPARKYFP	8	Unmodified	_NPARKYFP_					0	0	0		ENST00000536269.1_1_11:61009265-61011930:+|nuORF;ENST00000535551.1_1_11:60971603-60975156:+|nuORF;ENST00000539649.1_1_11:60971000-60974275:+|nuORF;ENSG00000256713|ENST00000312403|PGA5;ENSG00000229859|ENST00000325558|PGA3;ENSG00000229183|ENST00000378149|PGA4	ENST00000536269.1_1_11:61009265-61011930:+|nuORF	ENST00000536269.1_1_11:61009265-61011930:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.3041076660156	2	496.769252	991.52395	0.41732	0.00020731	3.7935	0.0018845	4.2108	0.0020918	496.77245698527844	83.153	0.68987	82.941	82.661	83.351	-0.21159					19	15	2	0	0	0	0.027866	1	10005	10005		20.482	4.0087	1	56233			55241	10680	38559	38623	60534	60534					0.027849108542341128
NPARPKVPKI	10	Unmodified	_NPARPKVPKI_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2987670898438	2	560.353483	1118.69241	-0.57475	-0.00032207	0.53153	0.00029784	-0.043225	-2.4221E-05	560.3533204142446	27.985	0.37259	28.066	27.795	28.168	0.081202					12	8	2	0	0	0	0.03519	1	1544	1544		25.574	0	1	57024	+		55242	27914	38560	38624	60535	60535					0.1378139276789625
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.77947998046875	2	456.779285	911.544017	0.61264	0.00027984	-1.0743	-0.00049071	-0.46163	-0.00021086	456.7785612235513	49.073	0.56222	49.073	48.724	49.287	0					42	15	4	0	0	0	0.094442	2	5051	5051;5061		112.41	20.22	1	3948100			55243	456;1424	38561	38625	60536;60537	60536					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.77947998046875	2	456.779285	911.544017	-0.074613	-3.4082E-05	-0.22655	-0.00010348	-0.30116	-0.00013756	456.7789352564035	49.316	0.57245	49.163	48.756	49.328	-0.15277					45	15	4	0	0	0	0.043667	2	5067	5056;5067		131.03	25.763	1	3969100			55244	456;1424	38561	38625	60538;60539	60539					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7798156738281	2	456.779285	911.544017	-0.87887	-0.00040145	0.42356	0.00019347	-0.45531	-0.00020798	456.77928335109067	49.039	0.54174	49.114	48.7	49.242	0.074196					33	14	3	0	0	0	0.043667	3	4978	4969;4978;4991		131.03	26.552	1	3675000			55245	456;1424	38561	38625	60540;60541;60542	60541					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7812805175781	2	456.779285	911.544017	-0.4933	-0.00022533	1.0349	0.00047273	0.54163	0.0002474	456.7795484649427	49.142	0.60754	49.041	48.618	49.226	-0.1008					42	15	4	0	0	0	0.19099	1	4927	4927		90.37	1.7269	1	1865400			55246	456;1424	38561	38625	60543	60543					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.77984619140625	2	456.779285	911.544017	-0.14539	-6.641E-05	1.5229	0.00069565	1.3775	0.00062924	456.7792798610216	49.373	0.71634	49.093	48.756	49.472	-0.27977					34	18	3	0	0	0	0.14024	1	4951	4951		101.6	18.314	1	1815300			55247	456;1424	38561	38625	60544	60544					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.7803649902344	2	456.779285	911.544017	-0.0072867	-3.3284E-06	1.6158	0.00073808	1.6085	0.00073475	456.77925554414685	49.238	0.75242	49.056	48.667	49.419	-0.18206					46	19	4	0	0	0	0.19099	1	4933	4933		90.37	7.0826	1	1635200			55248	456;1424	38561	38625	60545	60545					0.08470661794183343
NPASPPLSLL	10	Unmodified	_NPASPPLSLL_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2;nc|ENSG00000106305|Q13155-2|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.81512451171875	2	504.78985	1007.56515	0.0057076	2.8811E-06	-0.33902	-0.00017114	-0.33332	-0.00016825	504.789536366792	75.231	2.1194	75.055	74.441	76.56	-0.17548					105	51	4	0	0	0	0.03519	1	8838	8838		30.318	0	1	633420			55249	2776	38562	38626	60546	60546					0.06166627103061728
NPASRLTAL	9	Unmodified	_NPASRLTAL_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.771484375	2	471.771991	941.529429	0.61845	0.00029177	-0.25411	-0.00011988	0.36433	0.00017188	471.77153476559147	46.638	1.0907	46.638	46.056	47.146	0					58	29	4	0	0	0	0.094442	3	4613	4613;4624;4636		112.41	33.759	1	3347000			55250	2855;5270	38563	38627	60547;60548;60549	60547					0.056325896460293734
NPASRLTAL	9	Unmodified	_NPASRLTAL_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7720947265625	2	471.771991	941.529429	-0.16031	-7.5632E-05	0.95122	0.00044876	0.7909	0.00037313	471.771830981754	46.731	1.2072	46.578	45.918	47.125	-0.15301					65	32	3	0	0	0	0.14181	3	4613	4613;4622;4636		101.25	32.5	1	3183100			55251	2855;5270	38563	38627	60550;60551;60552	60550					0.056325896460293734
NPASRLTAL	9	Unmodified	_NPASRLTAL_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7718811035156	2	471.771991	941.529429	0.34799	0.00016417	0.46777	0.00022068	0.81576	0.00038485	471.7716637158456	46.616	1.0354	46.667	46.063	47.099	0.051395					46	28	2	0	0	0	0.079716	4	4573	4549;4561;4573;4586		117.81	35.061	1	3591800			55252	2855;5270	38563	38627	60553;60554;60555;60556	60555					0.056325896460293734
NPAVKTAL	8	Unmodified	_NPAVKTAL_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.24481201171875	2	407.245078	812.475603	-0.080613	-3.2829E-05	0.41205	0.00016781	0.33144	0.00013498	407.2451257275705	35.57	0.54425	35.355	35.062	35.606	-0.21555					29	13	3	0	0	0	0.5947	1	2714	2714		76.774	23.423	1	1169100			55253	9362	38564	38628	60557	60557					0.06186417214314588
NPAVKTAL	8	Unmodified	_NPAVKTAL_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.24530029296875	2	407.245078	812.475603	0.20809	8.4745E-05	0.10012	4.0773E-05	0.30821	0.00012552	407.24493474162955	35.591	0.68844	35.378	34.963	35.651	-0.21246					48	17	5	0	0	0	0.35998	1	2707	2707		102.77	25.927	1	1191100			55254	9362	38564	38628	60558	60558					0.06186417214314588
NPAVKTAL	8	Unmodified	_NPAVKTAL_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	407.2445068359375	2	407.245078	812.475603	-0.47833	-0.0001948	0.75011	0.00030548	0.27177	0.00011068	407.2452093195664	35.523	1.0423	35.336	34.985	36.028	-0.18675					47	28	4	0	0	0	0.34573	1	2689	2689		104.75	25.296	1	1072200			55255	9362	38564	38628	60559	60559					0.06186417214314588
NPCRNQATCV	10	Unmodified	_NPCRNQATCV_					0	0	0		ENST00000467821.1_1_9:113205816-113312285:-|nuORF;nc|ENSG00000165124|Q4LDE5-4|SVEP1;SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant;SVEP1|p.A3133Qfs*12|1|0.3|ENSG00000165124|chr9:110406203-110406203|C/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1	ENST00000467821.1_1_9:113205816-113312285:-|nuORF	ENST00000467821.1_1_9:113205816-113312285:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.78271484375	2	553.2475	1104.48045	-0.48724	-0.00026956	-3.3485	-0.0018526	-3.8358	-0.0021221	553.2455409984638	82.159	1.6372	82.185	81.619	83.257	0.025719					61	38	2	0	0	0	0.03519	1	10250	10250		30.318	7.7381	1	178360			55256	7368	38565	38629	60560	60560					-0.06761389976873033
NPCSPQGMHM	10	Unmodified	_NPCSPQGMHM_					0	0	0			REV__ENSG00000108582|ENST00000225719|CPD	REV__ENSG00000108582|ENST00000225719|CPD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.3086547851562	2	551.217354	1100.42016	-0.38964	-0.00021478	-2.4414	-0.0013457	-2.831	-0.0015605	551.2164505343287	50.137	0.39018	49.986	49.708	50.098	-0.1512					22	10	3	0	0	0	0.03519	1	5169	5169		12.207	5.4711	1	146570	+		55257	21748	38566	38630	60561	60561					-0.12603823631593514
NPCSTKIW	8	Unmodified	_NPCSTKIW_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2698059082031	2	474.73402	947.453487	0.52703	0.0002502	4.2029	0.0019953	4.7299	0.0022455	474.7359239830762	25.249	0.53041	25.329	25.05	25.581	0.08009					19	12	2	0	0	0	0.027866	1	1153	1153		73.975	0	1	99276			55258	18114;2013	38567	38631	60562	60562					-0.022341305257555177
NPDGIRPSW	9	Unmodified	_NPDGIRPSW_					0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2896118164062	2	521.259248	1040.50394	-0.26717	-0.00013927	3.5995	0.0018763	3.3324	0.001737	521.2611391215897	37.43	0.43732	37.43	37.195	37.632	0					16	11	2	0	0	0	0.024457	1	3032	3032		29.15	0	1	71676	+		55259	21763	38568	38632	60563	60563					-0.014688848763853457
NPDGLGALVP	10	Unmodified	_NPDGLGALVP_					0	0	0			REV__ENST00000586717.5_2_17:73934307-73937117:-|nuORF	REV__ENST00000586717.5_2_17:73934307-73937117:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7581481933594	2	476.758549	951.502546	0.18319	8.7336E-05	-1.8072	-0.00086158	-1.624	-0.00077425	476.7578441828843	100.9	1.5982	100.73	100.57	102.17	-0.17178					70	39	2	0	0	0	1.1088	1	12548	12548		31.53	1.6883	1	184860	+		55260	35605	38569	38633	60564	60564					0.0248548103485291
NPDKLEQLKLR	11	Unmodified	_NPDKLEQLKLR_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.9328308105469	3	451.933143	1352.7776	0.40681	0.00018385	-1.4332	-0.00064771	-1.0264	-0.00046386	451.93241469583455	98.661	2.0539	98.671	97.815	99.869	0.010239					182	47	5	0	0	0	1.0379	1	12587	12587		28.384	8.7568	1	1634100	+		55261	24056	38570	38634	60565	60565					0.1153209344302013
NPDKLEQLKLR	11	Unmodified	_NPDKLEQLKLR_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.9328918457031	3	451.933143	1352.7776	1.0842	0.00048999	-1.9286	-0.00087161	-0.84442	-0.00038162	451.9321198523276	96.984	2.193	96.984	95.823	98.016	-3.0518E-05					156	50	4	0	0	0	1.0558	1	12307	12307		23.514	3.1993	1	556020	+		55262	24056	38570	38634	60566	60566					0.1153209344302013
NPDKLEQLKLR	11	Unmodified	_NPDKLEQLKLR_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9327392578125	3	451.933143	1352.7776	1.0325	0.00046661	-2.0942	-0.00094645	-1.0617	-0.00047983	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0501	1	12220	12220		25.068	5.0373	1	1299700	+		55263	24056	38570	38634	60567	60567					0.1153209344302013
NPDKLEQLKLR	11	Unmodified	_NPDKLEQLKLR_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9329833984375	3	451.933143	1352.7776	-0.033263	-1.5033E-05	-1.0887	-0.00049204	-1.122	-0.00050707	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0501	1	12267	12267		25.068	1.6899	1	1141700	+		55264	24056	38570	38634	60568	60568					0.1153209344302013
NPDLEEPPL	9	Unmodified	_NPDLEEPPL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2518920898438	2	512.253297	1022.49204	-1.2797	-0.00065555	-1.7318	-0.00088712	-3.0115	-0.0015427	512.2523210892665	20.744	0.8742	20.744	20.468	21.342	0					40	17	3	0	0	0	0.12602	2	583	573;583		104.75	19.586	1	415540			55265	4257	38571	38635	60569;60570	60570					-0.018305464102354563
NPDLEEPPL	9	Unmodified	_NPDLEEPPL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	ENSG00000127616|ENST00000344626|SMARCA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2520141601562	2	512.253297	1022.49204	-0.50408	-0.00025822	-2.5057	-0.0012835	-3.0098	-0.0015418	512.2519113430076	20.933	0.72049	20.842	20.584	21.304	-0.090092					41	14	4	0	0	0	0.35646	2	596	584;596		68.787	17.334	1	406800			55266	4257	38571	38635	60571;60572	60572					-0.018305464102354563
NPDLRERGY	9	Unmodified	_NPDLRERGY_					0	0	0		ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENST00000441188.2_1_X:92477682-92478501:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3402709960938	2	560.280712	1118.54687	-0.13543	-7.5878E-05	0.096368	5.3993E-05	-0.03906	-2.1885E-05	560.2801976094611	101.14	0.16422	101.14	101.08	101.24	0					5	3	2	0	0	0	0.024447	1	12954	12954		19.104	0	1	23082			55267	14355	38572	38636	60573	60573					-0.007661148189527012
NPDNPLSLP	9	Unmodified	_NPDNPLSLP_					0	0	0		ENST00000302926.6_1_17:7322895-7323171:+|nuORF	ENST00000302926.6_1_17:7322895-7323171:+|nuORF	ENST00000302926.6_1_17:7322895-7323171:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.74853515625	2	483.748182	965.481811	0.14888	7.2023E-05	0.41087	0.00019876	0.55976	0.00027078	483.7483797828883	68.854	1.0611	68.561	68.251	69.312	-0.29266					70	27	4	0	0	0	0.74711	1	8239	8239		42.864	0.46813	1	4096100			55268	11965	38573	38637	60574	60574					-0.0023110934479291245
NPDRRRWW	8	Unmodified	_NPDRRRWW_					0	0	0		ENST00000350796.7_1_7:6203237-6203393:-|nuORF	ENST00000350796.7_1_7:6203237-6203393:-|nuORF	ENST00000350796.7_1_7:6203237-6203393:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.3059692382812	2	593.304855	1184.59516	-0.89764	-0.00053257	2.6963	0.0015997	1.7987	0.0010672	593.3063771708738	63.281	1.4528	63.097	62.671	64.124	-0.18386					98	36	4	0	0	0	0.74904	1	7158	7158		63.306	1.615	1	6469700			55269	12593	38574	38638	60575	60575					0.010244236116022876
NPDTQWIT	8	Unmodified	_NPDTQWIT_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.79718017578125	2	487.732532	973.45051	-0.24213	-0.00011809	0.36874	0.00017985	0.12662	6.1755E-05	487.732622389361	59.969	0.7483	59.768	59.5	60.248	-0.20016					32	19	2	0	0	0	0.027866	1	6798	6798		20.947	0	1	343660			55270	8493	38575	38639	60576	60576					-0.03727682378917052
NPDVFDEVE	9	Unmodified	_NPDVFDEVE_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3065185546875	2	532.232561	1062.45057	0.10861	5.7807E-05	-3.6528	-0.0019441	-3.5442	-0.0018863	532.2305265535133	58.925	0.39341	58.925	58.714	59.108	0					15	10	2	0	0	0	0.024292	1	6722	6722		40.778	2.9666	1	136010	+		55271	21692	38576	38640	60577	60577					-0.0781572716955452
NPDVFRKR	8	Unmodified	_NPDVFRKR_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.3140258789062	2	516.290882	1030.56721	0.62687	0.00032365	2.376	0.0012267	3.0029	0.0015503	516.2923713380476	98.118	0.17743	97.982	97.927	98.104	-0.13625					5	4	2	0	0	0	0.027866	1	12140	12140		21.96	1.013	1	108010	+		55272	29110	38577	38641	60578	60578					0.05315100631514724
NPEDRSDSSE	10	Unmodified	_NPEDRSDSSE_					0	0	0		ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.290771484375	2	568.228539	1134.44252	-0.51773	-0.00029419	-1.9472	-0.0011065	-2.4649	-0.0014006	568.2272836600076	60.208	0.48701	60.008	59.761	60.248	-0.20016					25	12	3	0	0	0	0.03519	1	6883	6883		5.2201	0	1	261540			55273	9425	38578	38642	60579	60579					-0.11931906156974037
NPEISHLLNN	10	Unmodified	_NPEISHLLNN_					0	0	0		UBQLN2|p.P525Lfs*71|1|0.5|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant;ENSG00000188021|ENST00000338222|UBQLN2	UBQLN2|p.P525Lfs*71|1|0.5|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	UBQLN2|p.P525Lfs*71|1|0.5|ENSG00000188021|chrX:56565441-56565441|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.794921875	2	575.796195	1149.57784	0.069151	3.9817E-05	-0.27119	-0.00015615	-0.20204	-0.00011633	575.7956816147164	63.833	1.0913	63.582	63.336	64.428	-0.25141					77	29	5	0	0	0	0.56936	1	7454	7454		80.455	11.668	1	3618400			55274	9684	38579	38643	60580	60580					0.009030384953121029
NPEKLGLNI	9	Unmodified	_NPEKLGLNI_					0	0	0			REV__nc|ENSG00000166311|P17405-4|SMPD1	REV__nc|ENSG00000166311|P17405-4|SMPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.76666259765625	2	499.287474	996.560395	-0.29794	-0.00014876	-3.2597	-0.0016276	-3.5577	-0.0017763	499.2868803107425	42.005	0.32917	41.873	41.753	42.082	-0.13219					19	9	3	0	0	0	0.024457	1	3819	3819		15.642	0	1	433890	+		55275	36886	38580	38644	60581	60581					0.061977429602734446
NPEKRYNVL	9	Unmodified	_NPEKRYNVL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.8091430664062	2	566.809105	1131.60366	-0.83495	-0.00047326	0.42783	0.0002425	-0.40712	-0.00023076	566.8093397518311	33.995	0.89024	33.995	33.662	34.552	0					64	22	4	0	0	0	0.11092	2	2492	2492;2503		108.09	38.46	1	3855500			55276	10567	38581	38645	60582;60583	60582					0.04311932737573443
NPEKRYNVL	9	Unmodified	_NPEKRYNVL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.8091430664062	2	566.809105	1131.60366	-0.49913	-0.00028291	-0.066988	-3.7969E-05	-0.56612	-0.00032088	566.8090467285764	33.76	0.81128	33.756	33.449	34.261	-0.0045624					66	20	4	0	0	0	0.14024	3	2451	2441;2451;2462		101.6	31.973	1	3827000			55277	10567	38581	38645	60584;60585;60586	60585					0.04311932737573443
NPEKRYNVL	9	Unmodified	_NPEKRYNVL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.8094482421875	2	566.809105	1131.60366	-0.90878	-0.00051511	0.55559	0.00031491	-0.3532	-0.0002002	566.8093939187395	33.731	0.9118	33.787	33.461	34.373	0.056568					69	22	5	0	0	0	0.11092	2	2412	2400;2412		108.09	38.46	1	3150600			55278	10567	38581	38645	60587;60588	60588					0.04311932737573443
NPEQWLEPD	9	Unmodified	_NPEQWLEPD_					0	0	0		nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8018188476562	2	564.253828	1126.4931	-0.73395	-0.00041413	4.0279	0.0022728	3.294	0.0018587	564.2556575240266	32.347	0.46035	32.359	32.063	32.523	0.011795					16	11	2	0	0	0	0.024438	1	2200	2200		36.447	14.744	1	94701			55279	5799	38582	38646	60589	60589					-0.06508332041335052
NPEVDLMKL	9	Unmodified	_NPEVDLMKL_					0	0	0			REV__ENST00000503671.2_1_4:110736986-110737082:+|nuORF	REV__ENST00000503671.2_1_4:110736986-110737082:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.27783203125	2	529.781167	1057.54778	-1.2529	-0.00066376	1.3502	0.00071533	0.097331	5.1564E-05	529.7814688028325	80.736	0.65555	80.584	80.259	80.915	-0.15168					19	15	2	0	0	0	0.023239	1	10002	10002		54.776	0	1	328530	+		55280	33961	38583	38647	60590	60590					0.021309635057377818
NPEVGMKYR	9	Unmodified	_NPEVGMKYR_					0	0	0		ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.2771606445312	2	547.276583	1092.53861	-1.0009	-0.00054777	0.71726	0.00039254	-0.28364	-0.00015523	547.2769545172373	30.718	3.6536	30.727	29.637	33.29	0.0086689					188	91	5	0	0	0	0.72494	1	2019	2019		44.377	0.26039	1	3706500			55281	3963	38584	38648	60591	60591					-0.003953850599373254
NPEVRNLKKPF	11	Unmodified	_NPEVRNLKKPF_					0	0	0			REV__ENST00000547685.5_1_12:56230822-56232389:-|nuORF	REV__ENST00000547685.5_1_12:56230822-56232389:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.2700500488281	3	447.9261	1340.75647	-0.13907	-6.2292E-05	-2.8419	-0.0012729	-2.9809	-0.0013352	447.92486079593294	22.213	0.80875	22.138	21.793	22.602	-0.075296					35	16	4	0	0	0	0.024757	1	791	791		32.034	14.201	1	84459	+		55282	34867	38585	38649	60592	60592					0.09972128134177183
NPEVRNLKKPF	11	Unmodified	_NPEVRNLKKPF_					0	0	0			REV__ENST00000547685.5_1_12:56230822-56232389:-|nuORF	REV__ENST00000547685.5_1_12:56230822-56232389:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	447.9261	1340.75647	-1.0631	-0.00047617	-1.9655	-0.00088039	-3.0285	-0.0013566	447.9253772751186	22.082	1.0586	22.156	21.687	22.745	0.073954	0.01223	0.00085405	NaN	24.276	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83357	+		55283	34867	38585	38649							0.09972128134177183
NPEVVYQKEN	10	Unmodified	_NPEVVYQKEN_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	609.317138671875	2	610.30131	1218.58807	-0.41857	-0.00025545	3.2109	0.0019596	2.7924	0.0017042	610.3031730224293	40.182	0.55509	40.07	39.792	40.347	-0.11223					29	14	3	0	0	0	0.03519	1	3503	3503		40.778	12.896	1	489840	+		55284	28667	38586	38650	60593	60593					-0.012483985701237543
NPEVVYQKEN	10	Unmodified	_NPEVVYQKEN_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	610.30131	1218.58807	-1.7538	-0.0010703	4.3779	0.0026718	2.6241	0.0016015	610.3039056879849	40.283	0.43638	40.306	40.126	40.562	0.023006	0.16904	0.0010007	NaN	25.574	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472400	+		55285	28667	38586	38650							-0.012483985701237543
NPEVVYQKEN	10	Unmodified	_NPEVVYQKEN_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	610.30131	1218.58807	-1.6165	-0.00098654	3.5278	0.002153	1.9113	0.0011665	610.3036498586217	40.203	0.3282	40.053	39.896	40.224	-0.1497	-0.08409	-3.6992E-05	NaN	25.574	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216660	+		55286	28667	38586	38650							-0.012483985701237543
NPEVVYQKEN	10	Unmodified	_NPEVVYQKEN_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	610.30131	1218.58807	-0.43059	-0.00026279	2.3912	0.0014594	1.9606	0.0011966	610.3029964115348	40.386	0.36395	40.161	40.004	40.368	-0.225	0.023607	-0.0014243	NaN	25.574	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207960	+		55287	28667	38586	38650							-0.012483985701237543
NPEVVYQKEN	10	Unmodified	_NPEVVYQKEN_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	610.30131	1218.58807	-1.3575	-0.00082846	3.7883	0.002312	2.4308	0.0014835	610.303411711677	40.386	0.30059	40.156	40.008	40.308	-0.2302	0.018455	0.00028096	NaN	25.574	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217210	+		55288	28667	38586	38650							-0.012483985701237543
NPFARLDN	8	Unmodified	_NPFARLDN_					0	0	0		nc|ENSG00000159147|Q9NYP3-2|DONSON;nc|ENSG00000159147|Q9NYP3-3|DONSON;ENSG00000159147|ENST00000303071|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	nc|ENSG00000159147|Q9NYP3-2|DONSON	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2713928222656	2	473.740691	945.466829	-0.58148	-0.00027547	0.6886	0.00032622	0.10712	5.0748E-05	473.7409382983721	34.941	0.43154	34.754	34.479	34.911	-0.18675					29	10	4	0	0	0	0.027866	1	2583	2583		51.335	12.083	1	1090600			55289	6722	38587	38651	60594	60594					-0.008085564221573804
NPFCMMSEV	9	Unmodified	_NPFCMMSEV_					0	0	0		ENST00000223321.8_1_7:42966189-42966243:-|nuORF	ENST00000223321.8_1_7:42966189-42966243:-|nuORF	ENST00000223321.8_1_7:42966189-42966243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2830200195312	2	529.211206	1056.40786	0.13617	7.2063E-05	-3.8805	-0.0020536	-3.7443	-0.0019815	529.2089425510162	24.756	2.1446	24.835	23.353	25.497	0.078344					101	48	3	0	0	0	0.024487	1	865	865		17.365	0	1	176270			55290	11199	38588	38652	60595	60595					-0.11808860094652118
NPFIYSFR	8	Unmodified	_NPFIYSFR_					0	0	0		ENSG00000177275|ENST00000318244|OR2AJ1	ENSG00000177275|ENST00000318244|OR2AJ1	ENSG00000177275|ENST00000318244|OR2AJ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.237548828125	2	522.269084	1042.52362	0.49421	0.00025811	1.2794	0.0006682	1.7736	0.00092631	522.2699247395815	63.676	0.36476	63.418	63.201	63.565	-0.25824					11	9	2	0	0	0	0.027866	1	7200	7200		27.882	0	1	89835			55291	8724	38589	38653	60596	60596					0.004054911343700951
NPFPFHEG	8	Unmodified	_NPFPFHEG_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77447509765625	2	472.716685	943.418816	-0.28221	-0.00013341	3.9754	0.0018793	3.6932	0.0017458	472.7183198559394	36.226	2.4437	36.184	34.992	37.436	-0.042454					106	65	3	0	0	0	0.027866	1	2945	2945		24.203	5.0992	1	310550			55292	6183	38590	38654	60597	60597					-0.0551563034218816
NPFPIGDPSR	10	Unmodified	_NPFPIGDPSR_					0	0	0		ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2409057617188	2	550.28018	1098.54581	-0.80673	-0.00044393	-2.1497	-0.0011829	-2.9564	-0.0016269	550.2799841212395	83.21	0.171	83.21	83.095	83.266	0					5	3	2	0	0	0	0.03519	1	10395	10395		2.1804	0	1	20734			55293	15444	38591	38655	60598	60598					0.0004767081213685742
NPFPPQLY	8	Unmodified	_NPFPPQLY_					0	0	0			REV__ENST00000590815.5_1_18:44662751-44663638:-|nuORF	REV__ENST00000590815.5_1_18:44662751-44663638:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	488.25177001953125	2	488.25036	974.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.739	1	29.739	29.239	30.239	0								0	0	0	0.60555	1	1850	1850		47.916	1.9636	1		+		55294	35710	38592	38656	60599	60599					-0.0020960013125659316
NPFRLVKS	8	Unmodified	_NPFRLVKS_					0	0	0			REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2620849609375	2	480.784902	959.55525	-0.78578	-0.00037779	2.206	0.0010606	1.4203	0.00068284	480.7855213694054	29.169	0.31873	29.169	28.904	29.223	0					11	7	2	0	0	0	0.027866	1	1746	1746		31.955	2.1133	1	128280	+		55295	23526	38593	38657	60600	60600					0.0738548388833351
NPFRLVKS	8	Unmodified	_NPFRLVKS_					0	0	0			REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.784902	959.55525	-0.53295	-0.00025624	0.14338	6.8937E-05	-0.38957	-0.0001873	480.7848046622002	28.955	0.34343	28.786	28.641	28.985	-0.16897	-0.20372	-0.00018787	NaN	30.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49531	+		55296	23526	38593	38657							0.0738548388833351
NPFRLVKS	8	Unmodified	_NPFRLVKS_					0	0	0			REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	REV__ENST00000370308.8_1_6:74189644-74210455:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.784902	959.55525	-0.15413	-7.4105E-05	-0.50079	-0.00024077	-0.65493	-0.00031488	480.7841062787392	29.023	0.42775	28.874	28.572	29	-0.14952	-0.11569	-0.0008073	NaN	30.504	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44431	+		55297	23526	38593	38657							0.0738548388833351
NPFRQGGGRK	10	Unmodified	_NPFRQGGGRK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.3344116210938	2	558.804688	1115.59482	-1.4749	-0.00082417	4.0214	0.0022472	2.5465	0.001423	558.8065188232392	52.104	2.0902	51.835	51.049	53.139	-0.26903					87	54	2	0	0	0	0.03519	1	5319	5319		42.396	0	1	839700			55298	3177	38594	38658	60601	60601					0.04165003891762353
NPFSPRLK	8	Unmodified	_NPFSPRLK_					0	0	0			REV__nc|ENSG00000138696|O00238-2|BMPR1B	REV__nc|ENSG00000138696|O00238-2|BMPR1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.74566650390625	2	479.777077	957.5396	0.16749	8.0358E-05	-0.97452	-0.00046755	-0.80703	-0.00038719	479.7764691181551	53.079	0.51643	53.079	52.75	53.267	0					31	13	3	0	0	0	0.027866	1	5699	5699		49.442	20.292	1	617520	+		55299	23888	38595	38659	60602	60602					0.059131973712851504
NPFVAWPSA	9	Unmodified	_NPFVAWPSA_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3008728027344	2	494.747985	987.481417	0.58012	0.00028701	-4.223	-0.0020893	-3.6429	-0.0018023	494.74696524193007	96.108	0.23952	96.115	95.988	96.228	0.0065079					7	5	2	0	0	0	0.024506	1	12207	12207		16.473	4.2663	1	41495	+		55300	21301	38596	38660	60603	60603					-0.01282484274008766
NPFVFYADL	9	Unmodified	_NPFVFYADL_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.8085327148438	2	543.26875	1084.52295	-1.1223	-0.00060974	-3.2253	-0.0017522	-4.3476	-0.0023619	543.7687942448155	52.183	0.32576	52.275	52.119	52.445	0.091938					9	7	2	0	0	0	0.024523	1	5498	5498		10.265	0	1	69921	+		55301	20521	38597	38661	60604	60604					-0.015933483053458986
NPFYPLTQ	8	Unmodified	_NPFYPLTQ_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.773681640625	2	490.247818	978.481082	-1.7093	-0.00083798	-2.6288	-0.0012888	-4.3381	-0.0021267	490.2464706303995	28.586	0.63112	28.341	28.121	28.753	-0.24524					23	14	2	0	0	0	0.027866	1	1652	1652		29.15	4.6304	1	442200			55302	8076	38598	38662	60605	60605					-0.00901903993860742
NPFYPLTQ	8	Unmodified	_NPFYPLTQ_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.247818	978.481082	-0.27578	-0.0001352	-3.8899	-0.001907	-4.1656	-0.0020422	490.2458431312773	28.466	0.44128	28.314	28	28.441	-0.15195	0.00031762	-0.00062867	NaN	29.15	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497460			55303	8076	38598	38662							-0.00901903993860742
NPGAKRIL	8	Unmodified	_NPGAKRIL_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.21905517578125	2	434.771794	867.529036	-0.40996	-0.00017824	1.0431	0.00045352	0.63315	0.00027528	434.7719940838608	30.094	0.57417	30.102	29.88	30.455	0.0086708					20	13	2	0	0	0	0.027866	1	1936	1936		18.324	9.5021	1	204290			55304	9870	38599	38663	60606	60606					0.08997214716850976
NPGAKRIL	8	Unmodified	_NPGAKRIL_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.771794	867.529036	-0.94167	-0.00040941	1.7072	0.00074224	0.76553	0.00033283	434.7721473424989	30.158	0.44858	30.158	29.936	30.384	0	0.075945	0.00027073	NaN	12.207	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237800			55305	9870	38599	38663							0.08997214716850976
NPGAQPPTP	9	Unmodified	_NPGAQPPTP_					0	0	0		ENST00000367330.5_1_1:201123059-201123311:-|nuORF	ENST00000367330.5_1_1:201123059-201123311:-|nuORF	ENST00000367330.5_1_1:201123059-201123311:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.7215270996094	2	439.721967	877.429381	0.16516	7.2623E-05	-1.4854	-0.00065318	-1.3203	-0.00058056	439.7212786424704	101.7	1.0018	101.57	101.19	102.19	-0.12576					40	24	3	0	0	0	0.89441	1	12643	12643		32.812	2.3088	1	253570			55306	12853	38600	38664	60607	60607					-0.014236476877727
NPGKKRGV	8	Unmodified	_NPGKKRGV_					0	0	0			REV__ENST00000297785.7_1_9:75524650-75527037:-|nuORF	REV__ENST00000297785.7_1_9:75524650-75527037:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2611083984375	2	428.261594	854.508634	0.4968	0.00021276	-0.17636	-7.5526E-05	0.32044	0.00013723	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0574	1	11264	11264		18.324	1.8513	1	86424000	+		55307	30015	38601	38665	60608	60608					0.07556044057048439
NPGKKRGV	8	Unmodified	_NPGKKRGV_					0	0	0			REV__ENST00000297785.7_1_9:75524650-75527037:-|nuORF	REV__ENST00000297785.7_1_9:75524650-75527037:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2624816894531	2	428.261594	854.508634	-0.27209	-0.00011653	0.66798	0.00028607	0.39589	0.00016955	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0574	1	11136	11136		20.482	0	1	68116000	+		55308	30015	38601	38665	60609	60609					0.07556044057048439
NPGRKWLPVSE	11	Unmodified	_NPGRKWLPVSE_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.2482604980469	3	428.234933	1281.68297	-0.094311	-4.0387E-05	-3.7783	-0.001618	-3.8726	-0.0016584	428.5675285904403	23.144	0.41477	22.964	22.697	23.112	-0.17989					9	8	2	0	0	0	0.024801	1	857	857		12.957	0.52465	1	14757	+		55309	21850	38602	38666	60610	60610					0.05339579691690233
NPGTHHPALTP	11	Unmodified	_NPGTHHPALTP_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.269775390625	2	571.291079	1140.56761	0.56043	0.00032017	1.6871	0.00096384	2.2476	0.001284	571.2918518296794	84.861	0.96151	84.723	84.49	85.452	-0.13789					56	22	3	0	0	0	0.024743	1	10258	10258		36.318	14.358	1	215350			55310	8227	38603	38667	60611	60611					0.0029447556069044367
NPGTHHPALTP	11	Unmodified	_NPGTHHPALTP_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	571.291079	1140.56761	-0.1084	-6.1929E-05	2.4587	0.0014046	2.3503	0.0013427	571.2922715102434	84.868	0.99775	84.868	84.587	85.584	0	0.081618	-8.3062E-05	NaN	27.644	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1017200			55311	8227	38603	38667							0.0029447556069044367
NPHFPITHT	9	Unmodified	_NPHFPITHT_					0	0	0			REV__FBXO7|p.Y425H|1|0.09|ENSG00000100225|chr22:32498234-32498234|T/C|missense_variant	REV__FBXO7|p.Y425H|1|0.09|ENSG00000100225|chr22:32498234-32498234|T/C|missense_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	532.2684326171875	2	532.269616	1062.52468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.99	1	106.85	106.35	107.35	-0.1346								0	0	0	0.59296	1	13284	13284		40.573	4.9543	1		+		55312	36030	38604	38668	60612	60612					-0.004082944967422009
NPHKMKALLV	10	Unmodified	_NPHKMKALLV_					0	0	0			REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8433227539062	2	575.841894	1149.66923	-2.0743	-0.0011945	3.9478	0.0022733	1.8735	0.0010789	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.0271	1	11446	11446		42.396	7.2441	1	5238400	+		55313	23623	38605	38669	60613	60613					0.10038630658914371
NPHKMKALLV	10	Unmodified	_NPHKMKALLV_					0	0	0			REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8431396484375	2	575.841894	1149.66923	-0.26489	-0.00015253	2.1267	0.0012247	1.8619	0.0010721	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0781	1	11561	11561		35.618	3.6634	1	4946400	+		55314	23623	38605	38669	60614	60614					0.10038630658914371
NPHKMKALLV	10	Unmodified	_NPHKMKALLV_					0	0	0			REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8429565429688	2	575.841894	1149.66923	-0.10957	-6.3095E-05	1.9835	0.0011422	1.8739	0.0010791	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0271	1	11575	11575		42.396	1.618	1	4935500	+		55315	23623	38605	38669	60615	60615					0.10038630658914371
NPHKMKALLV	10	Unmodified	_NPHKMKALLV_					0	0	0			REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	REV__ENST00000552973.1_1_13:52722507-52730359:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8435668945312	2	575.841894	1149.66923	-1.2575	-0.00072414	3.1191	0.0017961	1.8616	0.001072	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0992	1	11061	11061		32.812	3.6424	1	6251500	+		55316	23623	38605	38669	60616	60616					0.10038630658914371
NPIHALDLLE	10	Unmodified	_NPIHALDLLE_					0	0	0			REV__ENST00000557199.1_1_12:56740507-56742527:-|nuORF	REV__ENST00000557199.1_1_12:56740507-56742527:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.7947387695312	2	567.811313	1133.60807	-0.68582	-0.00038942	-1.1332	-0.00064346	-1.819	-0.0010329	568.3116152774605	72.731	0.65505	72.731	72.454	73.109	0					35	15	3	0	0	0	0.03519	1	8819	8819		26.693	10.22	1	243850	+		55317	35061	38606	38670	60617	60617					0.04661397160475644
NPIIYQVIDY	10	Unmodified	_NPIIYQVIDY_					0	0	0		ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.21917724609375	3	413.22029	1236.63904	-0.49301	-0.00020372	-2.3745	-0.00098118	-2.8675	-0.0011849	413.21930486742235	40.682	1.022	40.546	40.272	41.294	-0.13554					90	26	5	0	0	0	1.0909	1	3558	3558		33.922	1.8875	1	5383700			55318	4081	38607	38671	60618	60618					0.030185504747350933
NPIIYQVIDY	10	Unmodified	_NPIIYQVIDY_					0	0	0		ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2192077636719	3	413.22029	1236.63904	-0.23012	-9.5088E-05	-2.6133	-0.0010799	-2.8434	-0.0011749	413.2191365902727	40.895	0.98582	40.667	40.329	41.315	-0.2278					78	25	5	0	0	0	0.98527	1	3588	3588		47.96	11.432	1	4646800			55319	4081	38607	38671	60619	60619					0.030185504747350933
NPIQFPQEF	9	Unmodified	_NPIQFPQEF_					0	0	0			REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.824951171875	2	560.277106	1118.53966	-0.62379	-0.0003495	-0.68149	-0.00038182	-1.3053	-0.00073132	560.2766402472622	30.91	0.54951	30.922	30.75	31.299	0.011799					18	12	2	0	0	0	0.024323	1	1988	1988		53.351	15.54	1	107140	+		55320	19632	38608	38672	60620	60620					-0.014868474193917791
NPISTVTEL	9	Unmodified	_NPISTVTEL_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2633972167969	2	487.263665	972.512776	-0.27648	-0.00013472	0.96672	0.00047105	0.69024	0.00033633	487.26403497896405	66.651	0.95621	66.651	66.41	67.367	0					46	24	3	0	0	0	0.12914	2	7942	7930;7942		104.06	21.816	1	3541500			55321	3453	38609	38673	60621;60622	60622					0.025420439694244124
NPISTVTEL	9	Unmodified	_NPISTVTEL_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.263671875	2	487.263665	972.512776	-0.48323	-0.00023546	1.1366	0.00055382	0.65337	0.00031836	487.2641029114877	66.997	0.99633	66.716	66.481	67.477	-0.28148					53	25	4	0	0	0	0.077175	3	7951	7939;7951;7963		118.74	27.966	1	3848200			55322	3453	38609	38673	60623;60624;60625	60624					0.025420439694244124
NPISTVTEL	9	Unmodified	_NPISTVTEL_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.26434326171875	2	487.263665	972.512776	-0.71248	-0.00034716	1.1854	0.00057762	0.47295	0.00023045	487.264162125792	66.695	1.0965	66.725	66.463	67.56	0.030106					56	26	3	0	0	0	0.086035	2	7861	7848;7861		115.49	33.254	1	3508500			55323	3453	38609	38673	60626;60627	60627					0.025420439694244124
NPIVKPKY	8	Unmodified	_NPIVKPKY_					0	0	0			REV__nc|ENSG00000130024|Q8WUB8-3|PHF10	REV__nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7878723144531	2	479.789653	957.564752	0.096125	4.612E-05	-4.4337	-0.0021272	-4.3375	-0.0020811	479.78722562529333	22.315	0.46633	22.315	22.106	22.572	0					30	9	4	0	0	0	0.91239	1	780	780		50.025	4.0726	1	1022300	+		55324	23073	38610	38674	60628	60628					0.0842725217385123
NPIWEVFYS	9	Unmodified	_NPIWEVFYS_					0	0	0			REV__ENSG00000137267|ENST00000333628|TUBB2A	REV__ENSG00000137267|ENST00000333628|TUBB2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	577.796875	2	577.779482	1153.54441	-0.33618	-0.00019424	2.6128	0.0015097	2.2767	0.0013154	577.7810580094309	42.437	0.39098	42.463	42.289	42.68	0.026012					15	10	2	0	0	0	0.024487	1	3878	3878		31.955	0	1	138300	+		55325	23742	38611	38675	60629	60629					-0.026219632766242285
NPKGFKEKS	9	Unmodified	_NPKGFKEKS_					0	0	0			REV__ENST00000469145.5_1_1:156714305-156721275:-|nuORF	REV__ENST00000469145.5_1_1:156714305-156721275:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.268798828125	2	517.785099	1033.55564	-0.45568	-0.00023594	1.8369	0.00095109	1.3812	0.00071515	517.7868880680193	57.795	0.4279	57.561	57.274	57.702	-0.23363					24	10	3	0	0	0	0.024527	1	6283	6283		12.812	3.1061	1	789330	+		55326	24224	38612	38676	60630	60630					0.040208588175119075
NPKIDRKT	8	Unmodified	_NPKIDRKT_					0	0	0			REV__PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	REV__PGBD1|p.L697Rfs*8|1|0.36|ENSG00000137338|chr6:28301944-28301944|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7608947753906	2	486.285266	970.555979	-0.69233	-0.00033667	0.28323	0.00013773	-0.4091	-0.00019894	486.2853064709117	25.981	0.73518	25.745	25.18	25.916	-0.23603					28	17	3	0	0	0	0.027866	1	1258	1258		3.41	0.48058	1	292660	+		55327	23749	38613	38677	60631	60631					0.06952278537380607
NPKIKDIL	8	Unmodified	_NPKIKDIL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7953186035156	2	470.794935	939.575317	0.095809	4.5107E-05	-0.53674	-0.00025269	-0.44093	-0.00020759	470.79457097464905	42.623	1.4486	42.5	42.155	43.603	-0.12299					92	38	5	0	0	0	0.34573	2	3841	3841;3875		104.75	5.3716	1	6323500			55328	9030	38614	38678	60632;60633	60632					0.10311234828270699
NPKIKDIL	8	Unmodified	_NPKIKDIL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.79498291015625	2	470.794935	939.575317	-0.16722	-7.8727E-05	-0.45342	-0.00021347	-0.62064	-0.00029219	470.79462391555353	42.777	1.2262	42.54	42.229	43.455	-0.23706					91	32	5	0	0	0	0.28835	4	3853	3853;3863;3885;3898		116.9	5.4543	1	7099200			55329	9030	38614	38678	60634;60635;60636;60637	60634					0.10311234828270699
NPKIKDIL	8	Unmodified	_NPKIKDIL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.7958068847656	2	470.794935	939.575317	-0.78049	-0.00036745	-0.012291	-5.7864E-06	-0.79278	-0.00037324	470.7948979440245	42.829	1.0896	42.603	42.22	43.31	-0.22597					83	28	5	0	0	0	0.25873	1	3879	3879		129.68	18.034	1	5810100			55330	9030	38614	38678	60638	60638					0.10311234828270699
NPKILFSSR	9	Unmodified	_NPKILFSSR_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2924194335938	2	531.308741	1060.60293	-0.22976	-0.00012207	1.3902	0.00073863	1.1605	0.00061656	531.3100176337467	29.92	0.2091	29.771	29.626	29.835	-0.14952					7	4	2	0	0	0	0.024487	1	1833	1833		24.203	2.2429	1	80313			55331	8848	38615	38679	60639	60639					0.07505138088527019
NPKKKKSSA	9	Unmodified	_NPKKKKSSA_					0	0	0			REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF	REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.30010986328125	2	494.300916	986.587279	0.003029	1.4972E-06	-0.62374	-0.00030831	-0.62071	-0.00030682	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	0.83071	1	12260	12260		37.159	1.5408	1	42897000	+		55332	25636	38616	38680	60640	60640					0.09344851571472645
NPKKKKSSA	9	Unmodified	_NPKKKKSSA_					0	0	0			REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF	REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.30078125	2	494.300916	986.587279	-0.25602	-0.00012655	-0.19108	-9.4451E-05	-0.44709	-0.000221	494.30075389334326	96.309	2.5046	96.153	95.62	98.125	-0.15646					207	58	7	0	0	0	0.80003	1	11970	11970		39.253	4.0521	1	35328000	+		55333	25636	38616	38680	60641	60641					0.09344851571472645
NPKLKILL	8	Unmodified	_NPKLKILL_					0	0	0		ENST00000526684.1_1_1:111772478-111773917:+|nuORF;nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2;nc|ENSG00000064886|Q15782-5|CHI3L2	ENST00000526684.1_1_1:111772478-111773917:+|nuORF	ENST00000526684.1_1_1:111772478-111773917:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.8022155761719	2	469.823495	937.632438	0.45674	0.00021459	-0.62995	-0.00029596	-0.17321	-8.1377E-05	469.82303094848675	51.021	0.76787	50.84	50.572	51.34	-0.18071					45	19	3	0	0	0	0.027866	1	5231	5231		20.482	0	1	1112800			55334	1284	38617	38681	60642	60642					0.16112702104646814
NPKPSSWR	8	Unmodified	_NPKPSSWR_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1;WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.8135070800781	2	486.256508	970.498464	-0.45181	-0.00021969	-2.2833	-0.0011103	-2.7351	-0.00133	486.2545280869024	21.887	0.43454	21.684	21.42	21.855	-0.20261					16	8	3	0	0	0	0.027866	1	683	683		27.882	4.8398	1	35651			55335	941	38618	38682	60643	60643					0.012034363317980024
NPKPSSWR	8	Unmodified	_NPKPSSWR_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1;WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.256508	970.498464	0.35841	0.00017428	-4.2901	-0.0020861	-3.9317	-0.0019118	486.25436245041556	21.826	0.28939	21.648	21.445	21.735	-0.17721	-0.05669	-0.00043428	NaN	27.882	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25052			55336	941	38618	38682							0.012034363317980024
NPKPSSWR	8	Unmodified	_NPKPSSWR_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1;WWTR1|p.H193Lfs*78|1|0.09|ENSG00000018408|chr3:149542528-149542529|-/A|frameshift_variant	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.256508	970.498464	-0.30358	-0.00014762	-4.0133	-0.0019515	-4.3169	-0.0020991	486.2543158304069	21.973	0.33413	21.782	21.613	21.947	-0.19072	0.077345	-0.00016513	NaN	27.882	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35143			55337	941	38618	38682							0.012034363317980024
NPKQLLLD	8	Unmodified	_NPKQLLLD_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.795166015625	2	470.776742	939.538931	-0.73454	-0.00034581	1.1297	0.00053184	0.39517	0.00018604	470.7771942459433	42.781	0.91103	42.555	42.001	42.912	-0.22597					59	23	4	0	0	0	0.027866	1	3857	3857		42.396	8.2236	1	2479900	+		55338	25619	38619	38683	60644	60644					0.0667435793156983
NPKQRLGG	8	Unmodified	_NPKQRLGG_					0	0	0		AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2516174316406	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.0017	1	9880	9880		37.028	3.5129	1	1708300			55339	60	38620	38684	60645	60645					0.04839453677391248
NPKQRLGG	8	Unmodified	_NPKQRLGG_					0	0	0		AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.25152587890625	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0133	1	9358	9358		35.201	0	1	2292300			55340	60	38620	38684	60646	60646					0.04839453677391248
NPKQRLGG	8	Unmodified	_NPKQRLGG_					0	0	0		AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	AKT2|p.D388N|1|0.14|ENSG00000105221|chr19:40235903-40235903|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25146484375	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0133	1	9304	9304		35.201	3.2459	1	1872200			55341	60	38620	38684	60647	60647					0.04839453677391248
NPKRKPRL	8	Unmodified	_NPKRKPRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;SMARCA2|p.E1276K|1|0.19|ENSG00000080503|chr9:2123782-2123782|G/A|missense_variant;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.8247985839844	2	504.824892	1007.63523	1.2607	0.00063643	-1.5865	-0.00080091	-0.32581	-0.00016448	504.8240493041915	17.586	0.44806	17.432	17.209	17.658	-0.15403					24	8	4	0	0	0	0.88442	1	196	196		52.299	2.8576	1	1021500			55342	1686;4257	38621	38685	60648	60648					0.13171970282178336
NPKRKPRL	8	Unmodified	_NPKRKPRL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;SMARCA2|p.E1276K|1|0.19|ENSG00000080503|chr9:2123782-2123782|G/A|missense_variant;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	504.824892	1007.63523	-0.28963	-0.00014621	0.084671	4.2744E-05	-0.20496	-0.00010347	504.8248839020787	17.595	0.64752	17.389	17.166	17.813	-0.20669	-0.016508	0.0017735	NaN	52.299	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023700			55343	1686;4257	38621	38685							0.13171970282178336
NPKSPHFQV	9	Unmodified	_NPKSPHFQV_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-3|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.30078125	2	527.277441	1052.54033	-0.58896	-0.00031054	3.9267	0.0020705	3.3377	0.0017599	527.279426565842	23.222	0.83019	23.042	22.605	23.436	-0.17989					33	18	3	0	0	0	0.024539	1	881	881		27.882	1.0861	1	129650			55344	898	38622	38686	60649	60649					0.016159920203108413
NPKTPPDGKSH	11	Unmodified	_NPKTPPDGKSH_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.301644	1176.58874	-1.6326	-0.00096209	-3.5829	-0.0021114	-5.2155	-0.0030735	589.2992780378431	93.559	0.26234	93.419	93.266	93.528	-0.13995					8	5	2	0	0	0	0.024759	1	11509	11509		40.058	0	1	59496			55345	8490	38623	38687	60650	60650					0.0075044086956950196
NPKWQLVL	8	Unmodified	_NPKWQLVL_					0	0	0		nc|ENSG00000196932|Q6ZUK4-2|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.292724609375	2	499.295102	996.575651	-0.030015	-1.4986E-05	-4.0249	-0.0020096	-4.0549	-0.0020246	499.29303580504865	47.633	0.62778	47.48	47.231	47.858	-0.15301					48	18	4	0	0	0	0.88442	1	4761	4761		52.299	0.96372	1	5029800			55346	18632	38624	38688	60651	60651					0.07722654548115315
NPLAGQRKL	9	Unmodified	_NPLAGQRKL_					0	0	0		nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;ENSG00000121440|ENST00000263666|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.80059814453125	2	498.801083	995.587613	0.016044	8.003E-06	-0.87456	-0.00043623	-0.85851	-0.00042823	498.8004728359334	28.445	0.89483	28.526	28.124	29.018	0.080811					71	21	6	0	0	0	0.43973	1	1595	1595		63.306	4.5243	1	3023500			55347	18223	38625	38689	60652	60652					0.08964271291313253
NPLCLSPLN	9	Unmodified	_NPLCLSPLN_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF;REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.289794921875	2	485.754953	969.495352	-0.028314	-1.3754E-05	-2.8181	-0.0013689	-2.8464	-0.0013827	485.753501895473	34.716	0.56678	34.495	34.301	34.868	-0.22127					21	13	2	0	0	0	0.019995	1	2574	2574		79.713	30.271	1	161350	+		55348	23614;31599	38626	38690	60653	60653					0.009384251627807316
NPLCLSPLN	9	Unmodified	_NPLCLSPLN_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF;REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2897644042969	2	485.754953	969.495352	-0.22771	-0.00011061	-1.4282	-0.00069375	-1.6559	-0.00080436	485.75414328383977	34.5	0.79971	34.293	33.931	34.731	-0.20696					26	19	2	0	0	0	0.022587	1	2561	2561		74.255	5.4682	1	172650	+		55349	23614;31599	38626	38690	60654	60654					0.009384251627807316
NPLDPFVL	8	Unmodified	_NPLDPFVL_					0	0	0		ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;ENSG00000160870|ENST00000336374|CYP3A7;nc|ENSG00000160870|P24462-2|CYP3A7	ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P	ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.7511291503906	2	457.752736	913.490919	-0.83299	-0.0003813	-3.513	-0.0016081	-4.346	-0.0019894	457.7510139270922	29.814	1.2658	29.641	29.365	30.631	-0.17258					73	29	5	0	0	0	0.91239	1	1884	1884		50.025	2.1089	1	1777000			55350	11081	38627	38691	60655	60655					0.030712840115256768
NPLDPWPL	8	Unmodified	_NPLDPWPL_					0	0	0		ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	MSMS	OPSCC_39_ClassI_Rep-2	2	476.2485046386719	2	476.25036	950.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.8	1	103.8	103.3	104.3	0.0031357								0	0	0	0.78881	1	13282	13282		35.201	3.6709	1				55351	10899	38628	38692	60656	60656					0.00894399868752771
NPLETAAPPDL	11	Unmodified	_NPLETAAPPDL_					0	0	0			REV__ENST00000473758.5_1_14:23537713-23537824:-|nuORF	REV__ENST00000473758.5_1_14:23537713-23537824:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.31201171875	2	569.292953	1136.57135	-0.3792	-0.00021588	-0.013478	-7.6731E-06	-0.39268	-0.00022355	569.2937218597456	77.052	0.75733	77.052	76.955	77.712	0					26	17	2	0	0	0	0.024731	1	9502	9502		21.686	3.3613	1	102530	+		55352	33252	38629	38693	60657	60657					0.008531005438953798
NPLGLIIA	8	Unmodified	_NPLGLIIA_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	MSMS	OPSCC_40_ClassI_Rep-1	4	405.7623291015625	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.35	1	113.22	112.72	113.72	-0.12832								0	0	0	1.242	1	13736	13736		9.4706	0	1				55353	10919	38630	38694	60658	60658					0.08871891736760062
NPLGTAVCDVK	11	Unmodified	_NPLGTAVCDVK_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8341674804688	2	558.789524	1115.56449	-0.0089235	-4.9864E-06	1.1812	0.00066002	1.1722	0.00065504	558.7896371618667	64.184	0.63511	63.991	63.638	64.273	-0.19243					31	15	3	0	0	0	0.024748	1	7284	7284		37.508	5.5533	1	302940	+		55354	21256	38631	38695	60659	60659					0.011334643916825371
NPLKYLYPN	9	Unmodified	_NPLKYLYPN_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.322998046875	2	561.303124	1120.5917	-0.30222	-0.00016963	2.437	0.0013679	2.1348	0.0011983	561.8049205693463	67.716	1.1057	67.427	66.911	68.017	-0.28834					56	27	3	0	0	0	0.024506	1	8099	8099		23.042	10.836	1	286100			55355	3443	38632	38696	60660	60660					0.036223159943801875
NPLLLDCK	8	Carbamidomethyl (C)	_NPLLLDC(Carbamidomethyl (C))K_	NPLLLDC(1)K		NPLLLDC(51)K		0	1	0		nc|ENSG00000037280|P35916-3|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;ENST00000507059.5_1_5:180043993-180056331:-|nuORF	nc|ENSG00000037280|P35916-3|FLT4	nc|ENSG00000037280|P35916-3|FLT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7647399902344	2	486.762778	971.511002	-0.34403	-0.00016746	4.2762	0.0020815	3.9322	0.0019141	486.7647949477978	19.918	1.1581	19.813	19.411	20.569	-0.10477					56	23	4	0	0	0	0.89627	1	476	476		51.335	8.9393	1	1373300			55356	1045	38633	38697	60661	60661	15				0.024107116798290917
NPLLLLQIRM	10	Unmodified	_NPLLLLQIRM_					0	0	0		ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8718872070312	2	605.870651	1209.72675	0.020307	1.2303E-05	2.3728	0.0014376	2.3932	0.0014499	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	1.1329	1	12261	12261		27.882	1.1893	1	1147100			55357	17151	38634	38698	60662	60662					0.13027472864473566
NPLPKIEV	8	Unmodified	_NPLPKIEV_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7398376464844	2	455.273835	908.533118	0.45298	0.00020623	-0.87584	-0.00039875	-0.42285	-0.00019251	455.27362627588417	74.842	0.58019	74.584	74.244	74.824	-0.25887					19	13	3	0	0	0	0.027866	1	9149	9149		7.6903	0	1	83626			55358	18114;2013	38635	38699	60663	60663					0.07519259419893842
NPLPLLAS	8	Unmodified	_NPLPLLAS_					0	0	0			REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	REV__nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.7464904785156	2	412.747453	823.480354	0.66518	0.00027455	-3.7783	-0.0015595	-3.1131	-0.0012849	412.74581110347407	84.535	2.0721	84.397	83.629	85.702	-0.13789					118	48	4	0	0	0	1.0239	2	10238	10201;10238		33.516	3.0119	1	4796400	+		55359	24747	38636	38700	60664;60665	60665					0.061553013571028714
NPLPRVTW	8	Unmodified	_NPLPRVTW_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79327392578125	2	491.777077	981.5396	0.44815	0.00022039	0.28137	0.00013837	0.72952	0.00035876	491.77689571482085	61.353	0.38462	61.353	61.144	61.529	0					15	9	2	0	0	0	0.027866	1	7115	7115		37.159	0	1	174120			55360	4191	38637	38701	60666	60666					0.04809197371275786
NPLPRVTW	8	Unmodified	_NPLPRVTW_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	491.777077	981.5396	0.29893	0.000147	1.2779	0.00062842	1.5768	0.00077543	491.7773492040022	61.634	0.38398	61.407	61.189	61.573	-0.22663	0.075617	0.00092819	NaN	37.159	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213010			55361	4191	38637	38701							0.04809197371275786
NPLPRVTW	8	Unmodified	_NPLPRVTW_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.777077	981.5396	0.1921	9.4472E-05	0.2585	0.00012713	0.45061	0.0002216	491.77718687446827	61.291	0.34277	61.362	61.131	61.474	0.071125	0.030283	-7.4403E-05	NaN	37.159	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265930			55362	4191	38637	38701							0.04809197371275786
NPLPRVTW	8	Unmodified	_NPLPRVTW_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.777077	981.5396	-0.51944	-0.00025545	0.65746	0.00032332	0.13802	6.7875E-05	491.7771659946021	61.521	0.5409	61.307	60.96	61.501	-0.21375	-0.024592	0.00031799	NaN	37.159	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395550			55363	4191	38637	38701							0.04809197371275786
NPLPRVTW	8	Unmodified	_NPLPRVTW_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.777077	981.5396	-0.75601	-0.00037179	0.53954	0.00026533	-0.21647	-0.00010646	491.7772357879131	61.397	0.54129	61.221	60.997	61.538	-0.1761	-0.11083	0.00020201	NaN	37.159	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281240			55364	4191	38637	38701							0.04809197371275786
NPLPRVTW	8	Unmodified	_NPLPRVTW_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.777077	981.5396	-0.22008	-0.00010823	-0.17136	-8.4271E-05	-0.39144	-0.0001925	491.7767869197581	61.597	0.41385	61.34	61.091	61.505	-0.25725	0.0081624	-0.00049719	NaN	37.159	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296430			55365	4191	38637	38701							0.04809197371275786
NPLQAAEQP	9	Unmodified	_NPLQAAEQP_					0	0	0		ENST00000483061.1_1_2:224777012-224810044:-|nuORF	ENST00000483061.1_1_2:224777012-224810044:-|nuORF	ENST00000483061.1_1_2:224777012-224810044:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.3059997558594	2	484.245806	966.47706	-0.84804	-0.00041066	-0.34714	-0.0001681	-1.1952	-0.00057876	484.245186912548	30.599	0.16416	30.673	30.586	30.75	0.074314					5	3	2	0	0	0	0.024477	1	1914	1914		20.947	0	1	69622			55366	15275	38638	38702	60667	60667					-0.0075199348757450934
NPLRIGGP	8	Unmodified	_NPLRIGGP_					0	0	0			REV__ENST00000551124.5_1_12:56418779-56429112:+|nuORF	REV__ENST00000551124.5_1_12:56418779-56429112:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.9002380371094	2	412.24287	822.471186	-0.24315	-0.00010024	-0.023265	-9.5909E-06	-0.26642	-0.00010983	412.24266163154573	28.961	0.29902	28.812	28.657	28.956	-0.14952					9	6	2	0	0	0	0.027866	1	1693	1693		14.664	0	1	26501	+		55367	34925	38639	38703	60668	60668					0.05284952791430442
NPLSSEQEIG	10	Unmodified	_NPLSSEQEIG_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7070922851562	2	537.259111	1072.50367	-0.12384	-6.6537E-05	3.1465	0.0016905	3.0227	0.001624	537.2606740991746	57.253	0.87865	57.051	56.783	57.662	-0.20208					49	23	3	0	0	0	0.03519	1	6201	6201		44.377	19.858	1	3565300			55368	8860	38640	38704	60669	60669					-0.029683493869015365
NPLVHLALT	9	Unmodified	_NPLVHLALT_					0	0	0			REV__ENSG00000173145|ENST00000371361|NOC3L	REV__ENSG00000173145|ENST00000371361|NOC3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2911682128906	2	489.292559	976.570566	-0.28462	-0.00013926	1.1853	0.00057994	0.90064	0.00044068	489.2929976411419	66.475	0.59512	66.193	65.904	66.499	-0.28148					43	19	3	0	0	0	0.72875	1	7910	7910		44.117	6.3053	1	6168800	+		55369	26743	38641	38705	60670	60670					0.08134350685497793
NPLVRRTV	8	Unmodified	_NPLVRRTV_					0	0	0		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2698059082031	2	477.795801	953.577048	-0.31418	-0.00015011	1.0213	0.00048796	0.70709	0.00033785	477.79594624155715	35.522	0.51544	35.567	35.267	35.782	0.044056					18	12	2	0	0	0	0.027866	1	2668	2668		18.324	0	1	106680			55370	3645	38642	38706	60671	60671					0.09840288636905825
NPLYVEKPK	9	Unmodified	_NPLYVEKPK_					0	0	0		ENSG00000150712|ENST00000382142|MTMR12	ENSG00000150712|ENST00000382142|MTMR12	ENSG00000150712|ENST00000382142|MTMR12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.8213500976562	2	544.310949	1086.60735	-0.33221	-0.00018083	2.0819	0.0011332	1.7497	0.00095237	544.3120942708194	63.449	0.56723	63.222	63.095	63.662	-0.22773					20	14	2	0	0	0	0.024495	1	7226	7226		26.693	0	1	447520			55371	6150	38643	38707	60672	60672					0.06750602511419856
NPMADHTL	8	Unmodified	_NPMADHTL_					0	0	0		ENST00000549773.1_1_12:58164850-58165866:-|nuORF;ENST00000548681.1_1_12:58164719-58165893:-|nuORF;nc|ENSG00000037897|Q9UBP6-2|METTL1;ENSG00000037897|ENST00000324871|METTL1	ENST00000549773.1_1_12:58164850-58165866:-|nuORF	ENST00000549773.1_1_12:58164850-58165866:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7584228515625	2	449.708002	897.401452	-0.20141	-9.0576E-05	2.5987	0.0011687	2.3973	0.0010781	449.70874717955513	44.608	0.20542	44.645	44.509	44.715	0.0369					7	5	2	0	0	0	0.027866	1	4216	4216		30.504	0	1	37434			55372	1049	38644	38708	60673	60673					-0.05135293939508756
NPMHLLMR	8	Unmodified	_NPMHLLMR_					0	0	0		P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.78826904296875	2	506.264964	1010.51538	-0.32761	-0.00016586	4.3396	0.002197	4.012	0.0020311	506.2667108432446	47.171	0.8497	47.171	46.772	47.622	0					46	23	3	0	0	0	0.027866	1	4652	4652		33.516	5.6333	1	912900			55373	18936	38645	38709	60674	60674					0.01053897621750366
NPMHLLMR	8	Unmodified	_NPMHLLMR_					0	0	0		P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.264964	1010.51538	0.29011	0.00014687	3.6088	0.001827	3.8989	0.0019739	506.2663382327832	47.363	0.73856	47.21	46.899	47.637	-0.15301	0.0018765	-0.00057639	NaN	31.955	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1064300			55374	18936	38645	38709							0.01053897621750366
NPMHLLMR	8	Unmodified	_NPMHLLMR_					0	0	0		P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	P3H3|p.Q189L|1|0.23|ENSG00000110811|chr12:6829926-6829926|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.264964	1010.51538	-0.64851	-0.00032832	4.7402	0.0023998	4.0917	0.0020715	506.26678591707866	47.185	0.64221	47.244	46.88	47.522	0.059093	0.035894	0.00056914	NaN	31.955	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1091400			55375	18936	38645	38709							0.01053897621750366
NPMKAGTQL	9	Oxidation (M)	_NPM(Oxidation (M))KAGTQL_		NPM(1)KAGTQL		NPM(120)KAGTQL	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2501220703125	2	488.250034	974.485516	-0.48378	-0.0002362	0.56928	0.00027795	0.085506	4.1748E-05	488.25026800301254	26.024	1.0469	26.024	25.694	26.741	0					64	24	4	0	0	0	0.067814	3	1289	1277;1289;1302		122.18	37.26	1	4596800			55376	5244	38646	38710	60675;60676;60677	60676		214			-0.0027476284259364547
NPMKAGTQL	9	Oxidation (M)	_NPM(Oxidation (M))KAGTQL_		NPM(1)KAGTQL		NPM(100)KAGTQL	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.24981689453125	2	488.250034	974.485516	-0.54868	-0.00026789	0.48532	0.00023696	-0.06336	-3.0935E-05	488.2502110859332	26.043	1.083	26.02	25.693	26.776	-0.023088					63	25	4	0	0	0	0.12602	3	1273	1273;1286;1301		104.75	24.807	1	4833400			55377	5244	38646	38710	60678;60679;60680	60678		214			-0.0027476284259364547
NPMKAGTQL	9	Oxidation (M)	_NPM(Oxidation (M))KAGTQL_		NPM(1)KAGTQL		NPM(88)KAGTQL	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.249755859375	2	488.250034	974.485516	-0.15284	-7.4626E-05	-0.25174	-0.00012291	-0.40459	-0.00019754	488.24989032138785	25.733	0.9558	25.813	25.499	26.455	0.08009					58	22	4	0	0	0	0.20967	3	1192	1184;1192;1204		87.754	27.46	1	4754200			55378	5244	38646	38710	60681;60682;60683	60682		214			-0.0027476284259364547
NPMKAGTQL	9	Unmodified	_NPMKAGTQL_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.25244140625	2	480.252577	958.490601	-0.41067	-0.00019723	-0.18848	-9.0519E-05	-0.59915	-0.00028774	480.2525571470998	35.667	1.0275	35.667	35.343	36.37	0					62	27	4	0	0	0	0.020687	2	2765	2753;2765		148.99	47.775	1	11788000			55379	5244	38646	38711	60684;60685	60685					0.009695410200151855
NPMKAGTQL	9	Unmodified	_NPMKAGTQL_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.252685546875	2	480.252577	958.490601	-0.88319	-0.00042415	0.33766	0.00016216	-0.54553	-0.00026199	480.2527882720504	35.51	0.96283	35.488	35.159	36.122	-0.021763					61	25	4	0	0	0	0.014918	3	2725	2713;2725;2737		162.25	47.667	1	12622000			55380	5244	38646	38711	60686;60687;60688	60687					0.009695410200151855
NPMKAGTQL	9	Unmodified	_NPMKAGTQL_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2525939941406	2	480.252577	958.490601	-0.48224	-0.00023159	-0.083257	-3.9984E-05	-0.56549	-0.00027158	480.2525723345824	35.524	1.0788	35.568	35.229	36.307	0.044056					66	28	4	0	0	0	0.020687	2	2692	2680;2692		148.99	34.401	1	10509000			55381	5244	38646	38711	60689;60690	60690					0.009695410200151855
NPMNPGGNP	9	Unmodified	_NPMNPGGNP_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000478357.1_1_10:81036939-81053539:+|nuORF	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7586975097656	2	449.197802	896.381051	-0.58001	-0.00026054	1.1133	0.00050009	0.53328	0.00023955	449.19804480108235	44.637	0.34152	44.637	44.451	44.793	0					15	9	2	0	0	0	0.024381	1	4252	4252		15.642	0	1	120310			55382	2881	38647	38712	60691	60691					-0.07128464599304607
NPMPWVVVP	9	Unmodified	_NPMPWVVVP_					0	0	0			REV__ENST00000325110.10_1_5:43290999-43291044:-|nuORF	REV__ENST00000325110.10_1_5:43290999-43291044:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2988891601562	2	519.775688	1037.53682	-0.4317	-0.00022439	-0.50933	-0.00026473	-0.94102	-0.00048912	519.7764851629346	104.17	1.8119	104.17	103.38	105.19	0					73	49	2	0	0	0	0.024386	1	13489	13489		52.299	0	1	166360	+		55383	30385	38648	38713	60692	60692					0.01955605922103132
NPNAKKDL	8	Unmodified	_NPNAKKDL_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.27459716796875	2	450.250892	898.48723	-0.19134	-8.615E-05	-3.9046	-0.0017581	-4.096	-0.0018442	450.2482630061551	92.664	0.25602	92.655	92.516	92.772	-0.0082855					8	5	2	0	0	0	0.027866	1	11734	11734		51.335	22.186	1	37073	+		55384	24756;36782	38649	38714	60693	60693					0.03392614237657199
NPNAKKDL	8	Unmodified	_NPNAKKDL_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2745056152344	2	450.250892	898.48723	-0.1245	-5.6055E-05	-4.3663	-0.0019659	-4.4908	-0.002022	450.25120542881405	92.471	0.20265	92.349	92.261	92.464	-0.12241					10	4	3	0	0	0	0.027866	1	11367	11367		23.042	0	1	63843	+		55385	24756;36782	38649	38714	60694	60694					0.03392614237657199
NPNAYQEISA	10	Unmodified	_NPNAYQEISA_					0	0	0		ENSG00000203837|ENST00000369230|PNLIPRP3	ENSG00000203837|ENST00000369230|PNLIPRP3	ENSG00000203837|ENST00000369230|PNLIPRP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.830322265625	2	553.759278	1105.504	-0.88709	-0.00049124	-2.429	-0.0013451	-3.3161	-0.0018363	553.7588114342378	89.835	0.55688	89.673	89.3	89.857	-0.1626					18	12	2	0	0	0	0.03519	1	10934	10934		51.193	19.663	1	50272			55386	10282	38650	38715	60695	60695					-0.04452929667036187
NPNERVDLV	9	Unmodified	_NPNERVDLV_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2744140625	2	528.277638	1054.54072	-0.37021	-0.00019557	3.9424	0.0020827	3.5721	0.0018871	528.2796283140896	46.918	0.48651	46.977	46.693	47.179	0.059097					19	12	2	0	0	0	0.024374	1	4588	4588		40.778	1.5253	1	225740	+		55387	27144	38651	38716	60696	60696					0.015633669495173308
NPNFVPLN	8	Unmodified	_NPNFVPLN_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4;REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.740478515625	2	457.74016	913.465767	-0.78264	-0.00035825	1.5968	0.00073092	0.81416	0.00037267	457.74061481680116	28.062	1.0287	27.893	27.569	28.598	-0.16897					49	24	3	0	0	0	0.94517	1	1607	1607		45.952	3.0877	1	660750	+		55388	37745;23105	38652	38717	60697	60697					0.005572292089368602
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.316650390625	2	520.316566	1038.61858	-0.41856	-0.00021778	0.25792	0.0001342	-0.16064	-8.3584E-05	520.3165897542733	66.127	0.79655	65.885	65.542	66.338	-0.24145					49	19	3	0	0	0	0.020687	2	7582	7570;7582		148.99	66.682	1	1585700			55389	8292	38653	38718	60698;60699	60699					0.10081424605573375
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.3162841796875	2	520.316566	1038.61858	-0.46066	-0.00023969	0.25679	0.00013361	-0.20388	-0.00010608	520.3165634222834	66.037	0.83725	65.824	65.505	66.343	-0.21327					52	20	3	0	0	0	0.077175	1	7574	7574		118.74	36.503	1	1701300			55390	8292	38653	38718	60700	60700					0.10081424605573375
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.316650390625	2	520.316566	1038.61858	-0.30316	-0.00015774	0.27538	0.00014328	-0.027784	-1.4457E-05	520.316544996929	66.073	0.90093	65.822	65.479	66.38	-0.25112					54	22	4	0	0	0	0.086035	1	7557	7557		115.49	50.029	1	1955800			55391	8292	38653	38718	60701	60701					0.10081424605573375
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.316566	1038.61858	0.27098	0.00014099	0.20529	0.00010681	0.47627	0.00024781	520.3165302603877	65.749	0.34576	65.749	65.605	65.95	0	-0.087159	-6.0781E-05	NaN	148.99	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139820			55392	8292	38653	38718							0.10081424605573375
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.316566	1038.61858	-0.23764	-0.00012365	0.31661	0.00016474	0.078969	4.1089E-05	520.3167053273132	66.174	0.34424	65.899	65.718	66.063	-0.27441	0.063578	5.5062E-05	NaN	148.99	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141960			55393	8292	38653	38718							0.10081424605573375
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.3193969726562	2	534.31964	1066.62473	-0.89421	-0.0004778	-0.13769	-7.3573E-05	-1.0319	-0.00055137	534.3195494268781	33.724	0.98286	33.724	33.388	34.371	0					84	25	5	0	0	0	0.08613	4	2459	2450;2459;2472;2485		115.46	24.11	1	6034800			55394	9653	38654	38719	60702;60703;60704;60705	60703					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.3192138671875	2	534.31964	1066.62473	-0.87448	-0.00046725	-0.20983	-0.00011212	-1.0843	-0.00057937	534.3195110098206	33.545	0.90045	33.552	33.223	34.124	0.0066261					75	23	4	0	0	0	0.040175	4	2415	2405;2415;2426;2439		133.47	59.214	1	6407500			55395	9653	38654	38719	60706;60707;60708;60709	60707					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.3191528320312	2	534.31964	1066.62473	-0.31501	-0.00016831	-0.63701	-0.00034037	-0.95202	-0.00050868	534.3192546221242	33.54	0.97467	33.597	33.245	34.22	0.056572					74	24	4	0	0	0	0.08613	5	2381	2360;2369;2381;2393;2407		115.46	31.899	1	5404900			55396	9653	38654	38719	60710;60711;60712;60713;60714	60712					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.3174438476562	2	534.31964	1066.62473	-0.34743	-0.00018564	0.29299	0.00015655	-0.054436	-2.9086E-05	534.3196683361247	33.686	0.83365	33.455	33.193	34.026	-0.23107					53	20	4	0	0	0	0.22754	2	2413	2413;2425		85.359	28.638	1	2605100			55397	9653	38654	38719	60715;60716	60715					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.3175048828125	2	534.31964	1066.62473	-0.79654	-0.00042561	0.59552	0.0003182	-0.20102	-0.00010741	534.3198489569864	33.62	0.65764	33.42	33.209	33.866	-0.20019					48	16	4	0	0	0	0.17455	2	2411	2411;2424		94.006	35.224	1	2643500			55398	9653	38654	38719	60717;60718	60717					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENSG00000187735|ENST00000521604|TCEA1;ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	ENSG00000187735|ENST00000521604|TCEA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.31787109375	2	534.31964	1066.62473	-1.5608	-0.00083395	1.2831	0.00068561	-0.27762	-0.00014834	534.3202181092242	33.586	0.78713	33.42	33.195	33.982	-0.16565					51	19	4	0	0	0	0.08613	1	2395	2395		115.46	46.672	1	2351900			55399	9653	38654	38719	60719	60719					0.09407942837083283
NPNLTSKKV	9	Unmodified	_NPNLTSKKV_					0	0	0			REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MSMS	OPSCC_40_ClassI_Rep-3	6	500.7947998046875	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.72	1	82.58	82.08	83.08	-0.14014								0	0	0	0.56426	1	9958	9958		44.377	1.5129	1		+		55400	19191	38655	38720	60720	60720					0.07149145334574314
NPNPLLPSPAS	11	Unmodified	_NPNPLLPSPAS_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8306884765625	2	553.795663	1105.57677	-0.75102	-0.00041591	1.1556	0.00063998	0.4046	0.00022407	554.2990351105565	89.423	0.21255	89.26	89.173	89.386	-0.1626					5	4	2	0	0	0	0.024787	1	10910	10910		58.23	7.0372	1	30598			55401	10285	38656	38721	60721	60721					0.02820824126365551
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2957153320312	2	556.296362	1110.57817	-0.9582	-0.00053304	0.47416	0.00026378	-0.48404	-0.00026927	556.296555116552	30.692	0.91607	30.692	30.384	31.3	0					52	21	4	0	0	0	0.30843	2	1983	1983;1994		108.09	51.654	1	1797600			55402	1329	38657	38722	60722;60723	60722					0.027304582151373324
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.2960815429688	2	556.296362	1110.57817	-0.71093	-0.00039549	0.34957	0.00019446	-0.36136	-0.00020102	556.2965063387663	30.632	0.7497	30.64	30.331	31.081	0.0086708					51	17	4	0	0	0	0.42446	2	1973	1960;1973		96.19	58.379	1	1799700			55403	1329	38657	38722	60724;60725	60725					0.027304582151373324
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.295654296875	2	556.296362	1110.57817	-0.66554	-0.00037024	0.1278	7.1095E-05	-0.53774	-0.00029914	556.2963996512364	30.282	0.74619	30.356	30.129	30.875	0.074314					48	17	4	0	0	0	0.20364	2	1883	1873;1883		120.62	49.943	1	1956000			55404	1329	38657	38722	60726;60727	60727					0.027304582151373324
NPNREPSGKK	10	Unmodified	_NPNREPSGKK_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.802001953125	2	563.801811	1125.58907	-0.43826	-0.00024709	0.24158	0.0001362	-0.19668	-0.00011089	563.8028848924656	107.21	0.68676	107.21	106.78	107.47	0.0018311					34	19	2	0	0	0	1.0616	1	13660	13660		37.812	0.65241	1	142310			55405	6747	38658	38723	60728	60728					0.031298605894335196
NPNSKGVLM	9	Oxidation (M)	_NPNSKGVLM(Oxidation (M))_		NPNSKGVLM(1)		NPNSKGVLM(79)	0	0	1		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.25006103515625	2	488.250034	974.485516	-0.48378	-0.0002362	0.56928	0.00027795	0.085506	4.1748E-05	488.25026800301254	26.024	1.0469	26.024	25.694	26.741	0					64	24	4	0	0	0	0.27161	1	1267	1267		79.451	13.022	1	4596800			55406	8273	38659	38724	60729	60729		343			-0.002747628425822768
NPNVRGHLL	9	Unmodified	_NPNVRGHLL_					0	0	0			REV__ENST00000331920.10_1_9:98231408-98238427:-|nuORF	REV__ENST00000331920.10_1_9:98231408-98238427:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.63482666015625	2	510.290882	1018.56721	-0.19527	-9.9647E-05	3.3791	0.0017243	3.1838	0.0016247	510.29159592589787	101.34	1.241	101.35	100.87	102.11	0.0090332					45	28	3	0	0	0	0.024436	1	13026	13026		16.473	0	1	273580	+		55407	30484	38660	38725	60730	60730					0.05867100631530775
NPPATVRG	8	Unmodified	_NPPATVRG_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2486877441406	2	406.224677	810.434801	2.3437	0.00095208	3.0197	0.0012267	5.3634	0.0021788	406.2254868001996	87.949	0.28621	87.968	87.909	88.195	0.018555					14	6	3	0	0	0	0.027866	1	11026	11026		37.159	0	1	74473	+		55408	37137	38661	38726	60731	60731					0.022000758947115173
NPPENESNKH	10	Unmodified	_NPPENESNKH_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.3758544921875	2	583.265259	1164.51596	-0.15787	-9.208E-05	-3.2952	-0.001922	-3.4531	-0.0020141	583.2633051606215	46.611	1.0093	46.514	46.152	47.161	-0.096649					45	27	2	0	0	0	0.03519	1	4454	4454		52.937	12.159	1	1004800	+		55409	24538	38662	38727	60732	60732					-0.05971312923838923
NPPENESNKH	10	Unmodified	_NPPENESNKH_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	583.265259	1164.51596	-0.65652	-0.00038293	-2.9493	-0.0017202	-3.6058	-0.0021031	583.2635460368216	47.087	0.50147	46.817	46.662	47.163	-0.26939	0.13053	7.5772E-05	NaN	52.937	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1320900	+		55410	24538	38662	38727							-0.05971312923838923
NPPENESNKH	10	Unmodified	_NPPENESNKH_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	583.265259	1164.51596	-0.8948	-0.00052191	-2.6849	-0.001566	-3.5797	-0.0020879	583.2636893177156	46.923	0.45929	46.729	46.577	47.036	-0.19387	0.042186	0.00038423	NaN	52.937	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1433700	+		55411	24538	38662	38727							-0.05971312923838923
NPPHFIQGPD	10	Unmodified	_NPPHFIQGPD_					0	0	0			REV__ENST00000367884.6_1_1:165600502-165604990:+|nuORF	REV__ENST00000367884.6_1_1:165600502-165604990:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.271240234375	2	561.272355	1120.53016	-1.2106	-0.00067947	-3.9378	-0.0022102	-5.1484	-0.0028896	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	1.1088	1	1518	1518		31.53	1.2121	1	242840000	+		55412	31034	38663	38728	60733	60733					-0.02528615704909498
NPPHIALLL	9	Unmodified	_NPPHIALLL_					0	0	0			REV__ENSG00000120008|ENST00000263461|WDR11	REV__ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3009338378906	2	494.302927	986.591301	0.096981	4.7938E-05	-4.4881	-0.0022185	-4.3912	-0.0021706	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.96855	1	11935	11935		26.796	0.10319	1	34796000	+		55413	22507	38664	38729	60734	60734					0.09746941065179726
NPPIGQQIR	9	Unmodified	_NPPIGQQIR_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.7899475097656	2	511.790715	1021.56688	-0.84506	-0.00043249	-0.37231	-0.00019055	-1.2174	-0.00062304	511.790415391653	43.619	0.77542	43.382	43.099	43.874	-0.23736					47	20	3	0	0	0	0.85329	1	4009	4009		35.618	1.4457	1	1325900	+		55414	28787	38665	38730	60735	60735					0.05695680911662748
NPPIGQQIR	9	Unmodified	_NPPIGQQIR_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.790715	1021.56688	-0.31701	-0.00016224	-0.67539	-0.00034566	-0.9924	-0.0005079	511.79024738976995	43.454	0.81042	43.342	43.071	43.881	-0.11253	-0.026911	-0.00021965	NaN	35.618	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1363700	+		55415	28787	38665	38730							0.05695680911662748
NPPIGQQIR	9	Unmodified	_NPPIGQQIR_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	511.790715	1021.56688	-0.84506	-0.00043249	-0.37231	-0.00019055	-1.2174	-0.00062304	511.790415391653	43.619	0.77542	43.382	43.099	43.874	-0.23736	0.01347	9.0582E-05	NaN	35.618	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1325900	+		55416	28787	38665	38730							0.05695680911662748
NPPIGQQIR	9	Unmodified	_NPPIGQQIR_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.790715	1021.56688	-0.94277	-0.0004825	-0.34335	-0.00017573	-1.2861	-0.00065823	511.7904092406073	43.601	0.72459	43.382	43.14	43.864	-0.21938	0.013441	0.00012022	NaN	35.618	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1279000	+		55417	28787	38665	38730							0.05695680911662748
NPPKKANGIIT	11	Unmodified	_NPPKKANGIIT_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A;USH2A|p.G2799Vfs*31|1|0.34|ENSG00000042781|chr1:215878926-215878926|C/-|frameshift_variant	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	576.29443359375	2	576.840405	1151.66626	0.72517	0.00041831	-0.30658	-0.00017685	0.41859	0.00024146	576.8397162789225	59.591	0.55533	59.39	59.136	59.691	-0.20016					31	14	3	0	0	0	0.024749	1	6823	6823		8.6937	0	1	1313500			55418	1082;38131	38666	38731	60736	60736					0.09649078805750833
NPPLPPLKIS	10	Unmodified	_NPPLPPLKIS_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;ENST00000459915.2_1_3:124356033-124393462:+|nuORF;nc|ENSG00000160145|O60229-5|KALRN;ENST00000393496.5_1_3:124223749-124393462:+|nuORF;nc|ENSG00000160145|O60229-6|KALRN;nc|ENSG00000160145|O60229-4|KALRN	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3280029296875	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	1.0344	1	12794	12794		41.427	8.6142	1	22353000			55419	6785	38667	38732	60737	60737					0.10939479408125408
NPPLPVGSKVV	11	Unmodified	_NPPLPVGSKVV_					0	0	0		SPINT2|p.L194V|1|0.11|ENSG00000167642|chr19:38290563-38290563|C/G|missense_variant	SPINT2|p.L194V|1|0.11|ENSG00000167642|chr19:38290563-38290563|C/G|missense_variant	SPINT2|p.L194V|1|0.11|ENSG00000167642|chr19:38290563-38290563|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8301391601562	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0292	1	11430	11430		30.318	1.1477	1	4896800			55420	37962	38668	38733	60738	60738					0.10094577919812764
NPPLPVGSKVV	11	Unmodified	_NPPLPVGSKVV_					0	0	0		SPINT2|p.L194V|1|0.11|ENSG00000167642|chr19:38290563-38290563|C/G|missense_variant	SPINT2|p.L194V|1|0.11|ENSG00000167642|chr19:38290563-38290563|C/G|missense_variant	SPINT2|p.L194V|1|0.11|ENSG00000167642|chr19:38290563-38290563|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8304443359375	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.0344	1	11064	11064		29.17	1.2878	1	6921700			55421	37962	38668	38733	60739	60739					0.10094577919812764
NPPPKPKPMK	10	Unmodified	_NPPPKPKPMK_					0	0	0			REV__nc|ENSG00000112237|P24863-2|CCNC	REV__nc|ENSG00000112237|P24863-2|CCNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3302612304688	2	567.328619	1132.64269	-1.2298	-0.00069771	3.0293	0.0017186	1.7995	0.0010209	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.1329	1	11381	11381		27.882	1.8189	1	17705000	+		55422	21982	38669	38734	60740	60740					0.08166941767581193
NPPPRVKAS	9	Unmodified	_NPPPRVKAS_					0	0	0		ENST00000329565.5_1_16:11770979-11771057:+|nuORF	ENST00000329565.5_1_16:11770979-11771057:+|nuORF	ENST00000329565.5_1_16:11770979-11771057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.27886962890625	2	483.279983	964.545414	0.10211	4.935E-05	-2.4416	-0.00118	-2.3395	-0.0011306	483.2788798563669	94.192	2.0448	94.192	93.177	95.222	0					106	48	5	0	0	0	0.87448	1	11994	11994		34.173	0.65696	1	1262000			55423	12322	38670	38735	60741	60741					0.06172295882936396
NPPPRVKAS	9	Unmodified	_NPPPRVKAS_					0	0	0		ENST00000329565.5_1_16:11770979-11771057:+|nuORF	ENST00000329565.5_1_16:11770979-11771057:+|nuORF	ENST00000329565.5_1_16:11770979-11771057:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.279983	964.545414	-0.26159	-0.00012642	-2.1878	-0.0010573	-2.4494	-0.0011837	483.2790278277124	94.171	1.7573	94.171	93.414	95.171	-0.00022888	-0.024607	-9.0613E-05	NaN	34.173	87	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446700			55424	12322	38670	38735							0.06172295882936396
NPPPRVKAS	9	Unmodified	_NPPPRVKAS_					0	0	0		ENST00000329565.5_1_16:11770979-11771057:+|nuORF	ENST00000329565.5_1_16:11770979-11771057:+|nuORF	ENST00000329565.5_1_16:11770979-11771057:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.279983	964.545414	0.30047	0.00014521	-2.4361	-0.0011773	-2.1356	-0.0010321	483.27890336573904	94.273	1.7062	94.151	93.41	95.116	-0.12215	-0.044638	-0.00033058	NaN	34.173	106	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1221400			55425	12322	38670	38735							0.06172295882936396
NPPSPILRAGR	11	Unmodified	_NPPSPILRAGR_					0	0	0			REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.343994140625	2	589.343646	1176.67274	-2.3876	-0.0014071	1.117	0.00065827	-1.2707	-0.00074887	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0074	1	11438	11438		35.178	0.026198	1	4758600	+		55426	32307	38671	38736	60742	60742					0.09147016757151505
NPPSPILRAGR	11	Unmodified	_NPPSPILRAGR_					0	0	0			REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3432006835938	2	589.343646	1176.67274	-1.6043	-0.00094547	0.20595	0.00012138	-1.3983	-0.0008241	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0344	1	12012	12012		29.17	1.0886	1	12648000	+		55427	32307	38671	38736	60743	60743					0.09147016757151505
NPPSPILRAGR	11	Unmodified	_NPPSPILRAGR_					0	0	0			REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3439331054688	2	589.343646	1176.67274	0.92698	0.00054631	-2.8783	-0.0016963	-1.9514	-0.00115	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0281	1	11353	11353		30.569	2.4874	1	4746700	+		55428	32307	38671	38736	60744	60744					0.09147016757151505
NPPSPILRAGR	11	Unmodified	_NPPSPILRAGR_					0	0	0			REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3438720703125	2	589.343646	1176.67274	-0.80911	-0.00047685	-0.041358	-2.4374E-05	-0.85047	-0.00050122	589.3434865746038	94.967	0.64822	94.829	94.506	95.155	-0.13779					49	14	4	0	0	0	1.013	1	11740	11740		33.922	5.8401	1	1636700	+		55429	32307	38671	38736	60745	60745					0.09147016757151505
NPPSPILRAGR	11	Unmodified	_NPPSPILRAGR_					0	0	0			REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3430786132812	2	589.343646	1176.67274	-1.3212	-0.00077864	0.069689	4.1071E-05	-1.2515	-0.00073757	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0075	1	11020	11020		35.152	4.8343	1	5175100	+		55430	32307	38671	38736	60746	60746					0.09147016757151505
NPPSPILRAGR	11	Unmodified	_NPPSPILRAGR_					0	0	0			REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	REV__ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3433837890625	2	589.343646	1176.67274	-0.33817	-0.0001993	-1.0615	-0.00062561	-1.3997	-0.0008249	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0465	1	11055	11055		26.063	2.5407	1	6196800	+		55431	32307	38671	38736	60747	60747					0.09147016757151505
NPPTLGLL	8	Unmodified	_NPPTLGLL_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.74627685546875	2	412.747453	823.480354	0.7645	0.00031555	-3.8759	-0.0015998	-3.1114	-0.0012842	412.7457683107616	84.583	1.9803	84.424	83.671	85.651	-0.15869					114	46	4	0	0	0	1.0338	1	10258	10258		31.955	0	1	6553300	+		55432	23887	38672	38737	60748	60748					0.06155301357091503
NPQAEGQLQ	9	Unmodified	_NPQAEGQLQ_					0	0	0		ENSG00000232810|ENST00000449264|TNF	ENSG00000232810|ENST00000449264|TNF	ENSG00000232810|ENST00000449264|TNF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.3033752441406	2	492.740888	983.467223	-0.41612	-0.00020504	-2.422	-0.0011934	-2.8381	-0.0013984	492.7398039716474	31.506	0.51786	31.575	31.327	31.845	0.06896					23	12	2	0	0	0	0.024389	1	2094	2094		42.864	0	1	269920			55433	10709	38673	38738	60749	60749					-0.025171814929535685
NPQAIRDL	8	Unmodified	_NPQAIRDL_					0	0	0			REV__nc|ENSG00000127955|P63096-2|GNAI1	REV__nc|ENSG00000127955|P63096-2|GNAI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.73797607421875	2	463.756341	925.498129	0.24197	0.00011222	0.50198	0.0002328	0.74395	0.00034501	463.7551021133442	31.823	0.52477	31.892	31.606	32.131	0.068962					21	12	2	0	0	0	0.027866	1	2102	2102		37.159	6.6555	1	117890	+		55434	22956	38674	38739	60750	60750					0.032400166119259666
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.29296875	2	536.293288	1070.57202	-1.3572	-0.00072783	0.32887	0.00017637	-1.0283	-0.00055146	536.2934872925865	44.437	1.4248	44.437	44.089	45.514	0					96	41	3	0	0	0	0.025498	5	4249	4227;4237;4249;4261;4274		145.16	56.817	1	21126000			55435	2049	38675	38740	60751;60752;60753;60754;60755	60753					0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2926025390625	2	536.293288	1070.57202	-1.6341	-0.00087638	0.68948	0.00036976	-0.94466	-0.00050661	536.2936837912915	44.589	1.4206	44.44	44.094	45.515	-0.1488					92	41	3	0	0	0	0.016542	5	4243	4232;4243;4255;4267;4280		154.12	69.203	1	19646000			55436	2049	38675	38740	60756;60757;60758;60759;60760	60757					0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2931518554688	2	536.293288	1070.57202	-0.9242	-0.00049564	0.010785	5.784E-06	-0.91342	-0.00048986	536.2933196492731	44.489	1.3639	44.526	44.209	45.573	0.0369					85	39	3	0	0	0	0.01388	5	4180	4169;4180;4192;4205;4218		180.87	84.679	1	20942000			55437	2049	38675	38740	60761;60762;60763;60764;60765	60762					0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.293288	1070.57202	-1.1408	-0.00061178	-0.096098	-5.1537E-05	-1.2369	-0.00066332	536.2932055730398	44.584	0.82359	44.479	43.96	44.784	-0.10468	-0.0085371	-0.00041583	NaN	180.87	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797160			55438	2049	38675	38740							0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.293288	1070.57202	-1.1208	-0.00060106	-0.08419	-4.5151E-05	-1.205	-0.00064622	536.2932776609297	44.761	0.74931	44.509	44.037	44.786	-0.25252	0.021086	-0.00040306	NaN	180.87	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757740			55439	2049	38675	38740							0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.293288	1070.57202	-1.4426	-0.00077367	0.48165	0.00025831	-0.96097	-0.00051536	536.2935168342001	44.745	0.74499	44.534	44.048	44.793	-0.21109	0.046827	0.00020385	NaN	180.87	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835670			55440	2049	38675	38740							0.039559399836207376
NPQKKQLGF	9	Unmodified	_NPQKKQLGF_					0	0	0			REV__ENST00000575595.5_1_17:19232930-19235177:+|nuORF	REV__ENST00000575595.5_1_17:19232930-19235177:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.813720703125	2	530.300916	1058.58728	-1.0493	-0.00055645	-2.1832	-0.0011577	-3.2325	-0.0017142	530.2995823426367	29.508	0.54734	29.336	29.113	29.66	-0.17258					17	12	2	0	0	0	0.024487	1	1786	1786		11.511	0	1	76071	+		55441	35461	38676	38741	60766	60766					0.06032851571490028
NPQNTIYD	8	Unmodified	_NPQNTIYD_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.76849365234375	2	482.722164	963.429775	-0.58543	-0.0002826	0.18693	9.0237E-05	-0.3985	-0.00019236	482.72207452276257	44.326	0.55316	44.222	43.996	44.549	-0.10468					22	14	2	0	0	0	0.027866	1	4117	4117		44.117	6.9577	1	354460			55442	6466	38677	38742	60767	60767					-0.05340272758564879
NPQQRNAL	8	Unmodified	_NPQQRNAL_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7515563964844	2	470.75159	939.488627	0.35258	0.00016598	-1.1521	-0.00054233	-0.79948	-0.00037636	470.7513693696019	23.871	1.3107	23.659	22.91	24.221	-0.212					59	29	3	0	0	0	0.46709	2	1001	989;1001		88.643	15.337	1	937340			55443	1504	38678	38743	60768;60769	60769					0.01646248326414934
NPQSSLPSLL	10	Unmodified	_NPQSSLPSLL_					0	0	0		ENST00000358758.11_1_16:29825955-29826759:+|nuORF	ENST00000358758.11_1_16:29825955-29826759:+|nuORF	ENST00000358758.11_1_16:29825955-29826759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3291015625	2	528.290214	1054.56587	-0.36749	-0.00019414	3.0757	0.0016249	2.7083	0.0014307	528.2916880012958	77.223	0.46972	77.223	77.04	77.51	0					16	10	2	0	0	0	0.03519	1	9572	9572		39.253	0	1	143690			55444	12723	38679	38744	60770	60770					0.04077421752117516
NPQTLLFS	8	Unmodified	_NPQTLLFS_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.7696838378906	2	460.247818	918.481082	0.41329	0.00019022	2.4078	0.0011082	2.8211	0.0012984	460.2493579140038	39.913	0.40232	39.913	39.696	40.099	0					21	10	3	0	0	0	0.027866	1	3458	3458		37.159	6.6555	1	166890			55445	7461	38680	38745	60771	60771					0.018580960061512997
NPQTSRLL	8	Unmodified	_NPQTSRLL_					0	0	0		ENST00000554851.5_1_14:50110352-50118040:-|nuORF	ENST00000554851.5_1_14:50110352-50118040:-|nuORF	ENST00000554851.5_1_14:50110352-50118040:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7640380859375	2	464.764166	927.513779	-0.16525	-7.68E-05	0.43436	0.00020187	0.26911	0.00012507	464.76406313068026	21.831	0.81397	21.64	21.275	22.089	-0.19072					31	16	4	0	0	0	1.0284	1	708	708		32.812	0.85756	1	392630			55446	16663	38681	38746	60772	60772					0.047123031289856954
NPRADRPV	8	Unmodified	_NPRADRPV_					0	0	0			REV__ENST00000601528.1_1_19:17738777-17738981:-|nuORF	REV__ENST00000601528.1_1_19:17738777-17738981:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7714538574219	2	462.754133	923.493713	-0.76514	-0.00035407	1.2234	0.00056613	0.45825	0.00021206	462.7544264285492	25.471	0.99292	25.471	24.874	25.867	0					48	23	3	0	0	0	0.027866	1	1143	1143		18.324	0.95945	1	403680	+		55447	35860	38682	38747	60773	60773					0.028905521890351338
NPRHGPIF	8	Unmodified	_NPRHGPIF_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7669982910156	2	469.253769	936.492984	-0.74018	-0.00034733	0.46488	0.00021815	-0.2753	-0.00012919	469.2536533337886	35.382	0.58373	35.36	35.085	35.669	-0.021763					28	14	3	0	0	0	0.027866	1	2679	2679		28.254	7.7724	1	221830	+		55448	36342	38683	38748	60774	60774					0.022197575400014102
NPRIDMNTNF	10	Unmodified	_NPRIDMNTNF_					0	0	0			REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF	REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.5791015625	3	407.860878	1220.56081	0.48277	0.0001969	4.0602	0.001656	4.5429	0.0018529	407.86265873912976	34.147	0.62402	34.142	33.79	34.414	-0.0045624					28	15	3	0	0	0	0.03519	1	2537	2537		9.6461	0	1	88381	+		55449	33370	38684	38749	60775	60775					-0.04065205382175918
NPRIDMNTNF	10	Unmodified	_NPRIDMNTNF_					0	0	0			REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF	REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	407.860878	1220.56081	0.79949	0.00032608	4.0856	0.0016664	4.8851	0.0019924	407.86248487140665	34.002	0.48765	34.052	33.804	34.292	0.050251	-0.045272	8.2288E-06	NaN	21.78	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71158	+		55450	33370	38684	38749							-0.04065205382175918
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MSMS	OPSCC_39_ClassI_Rep-1	1	551.7962036132812	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.771	1	57.771	57.271	58.271	0								0	0	0	0.12136	1	6515	6515		87.696	2.7809	1				55451	2928	38685	38750	60776	60776					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MSMS	OPSCC_39_ClassI_Rep-1	1	551.7975463867188	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.834	1	57.834	57.334	58.334	0								0	0	0	0.042231	1	6525	6525		112.41	38.436	1				55452	2928	38685	38750	60777	60777					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MSMS	OPSCC_39_ClassI_Rep-1	1	551.7990112304688	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.916	1	57.916	57.416	58.416	0								0	0	0	0.084717	1	6538	6538		95.815	13.575	1				55453	2928	38685	38750	60778	60778					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MSMS	OPSCC_39_ClassI_Rep-1	1	551.7989501953125	2	551.798206	1101.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.993	1	57.993	57.493	58.493	0								0	0	0	0.047455	1	6551	6551		110.12	27.879	1				55454	2928	38685	38750	60779	60779					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.7968139648438	2	551.798206	1101.58186	-0.976	-0.00053856	1.59	0.00087735	0.61398	0.00033879	551.7989174962838	58.069	0.90406	57.894	57.608	58.512	-0.1749					57	24	3	0	0	0	0.10174	3	6547	6523;6536;6547		110.12	38.242	1	3296500			55455	2928	38685	38750	60780;60781;60782	60782					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.7965698242188	2	551.798206	1101.58186	-0.84846	-0.00046818	1.2834	0.00070818	0.43494	0.00024	551.798681749701	57.629	1.286	57.725	57.204	58.49	0.095306					65	34	3	0	0	0	0.1158	4	6418	6414;6418;6431;6443		107.01	30.233	1	2892400			55456	2928	38685	38750	60783;60784;60785;60786	60784					0.035131279889810685
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3115234375	2	533.311815	1064.60908	-0.89803	-0.00047893	0.13473	7.1855E-05	-0.7633	-0.00040708	533.3118626350591	22.871	1.082	22.871	22.525	23.607	0					59	24	4	0	0	0	0.057894	4	834	824;834;845;858		125.81	57.027	1	1856800			55457	5834	38686	38751	60787;60788;60789;60790	60788					0.07935656320046292
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.3114013671875	2	533.311815	1064.60908	-0.71432	-0.00038095	-0.03946	-2.1044E-05	-0.75378	-0.000402	533.3117705009646	22.878	1.0802	22.816	22.519	23.599	-0.062166					57	24	4	0	0	0	0.033448	3	831	820;831;842		138.83	67.53	1	1981500			55458	5834	38686	38751	60791;60792;60793	60792					0.07935656320046292
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.3114013671875	2	533.311815	1064.60908	-1.1383	-0.00060707	0.46788	0.00024953	-0.67042	-0.00035754	533.3120105487499	22.74	1.3981	22.814	22.51	23.908	0.073954					72	31	5	0	0	0	0.10174	3	784	774;784;796		110.12	38.824	1	1716700			55459	5834	38686	38751	60794;60795;60796	60795					0.07935656320046292
NPRKHITSLK	10	Unmodified	_NPRKHITSLK_					0	0	0		ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	ENST00000507549.7_1_5:69717595-69723542:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	597.3576049804688	2	597.359296	1192.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.199	1	91.075	90.575	91.575	-0.12341								0	0	0	0.74335	1	11189	11189		39.253	8.9351	1				55460	5834	38687	38752	60797	60797					0.11539589791209437
NPRKIRPIS	9	Unmodified	_NPRKIRPIS_					0	0	0			REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8033447265625	2	540.835457	1079.65636	-0.066224	-3.5816E-05	2.1769	0.0011773	2.1106	0.0011415	540.8366694139683	95.66	2.1424	95.662	95.05	97.193	0.0020752					117	49	4	0	0	0	0.024477	1	12205	12205		20.947	0	1	373790	+		55461	19667	38688	38753	60798	60798					0.11971935591031979
NPRKIRPIS	9	Unmodified	_NPRKIRPIS_					0	0	0			REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.835457	1079.65636	-0.29396	-0.00015899	2.8361	0.0015339	2.5422	0.0013749	540.8368520116915	95.57	1.9832	95.433	94.852	96.835	-0.13689	-0.13772	-3.7621E-05	NaN	14.865	82	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190910	+		55462	19667	38688	38753							0.11971935591031979
NPRKIRPIS	9	Unmodified	_NPRKIRPIS_					0	0	0			REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.835457	1079.65636	0.34738	0.00018788	2.2527	0.0012183	2.6	0.0014062	540.8364570417443	95.56	1.3384	95.437	94.77	96.108	-0.12251	-0.13344	-0.00066877	NaN	14.865	75	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170620	+		55463	19667	38688	38753							0.11971935591031979
NPRKIRPIS	9	Unmodified	_NPRKIRPIS_					0	0	0			REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	REV__DGAT2L6|p.P292S|1|0.28|ENSG00000184210|chrX:70204966-70204966|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.835457	1079.65636	-1.1476	-0.00062068	3.6905	0.001996	2.5429	0.0013753	540.8372888766636	95.629	1.4599	95.477	94.882	96.342	-0.15186	-0.093227	0.00088653	NaN	14.865	71	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217810	+		55464	19667	38688	38753							0.11971935591031979
NPRLLRTL	8	Unmodified	_NPRLLRTL_					0	0	0		ENST00000469442.5_1_2:86014100-86014427:+|nuORF	ENST00000469442.5_1_2:86014100-86014427:+|nuORF	ENST00000469442.5_1_2:86014100-86014427:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2943420410156	2	491.811451	981.608348	0.8049	0.00039586	-4.329	-0.0021291	-3.5241	-0.0017332	491.8092943783364	59.595	0.51665	59.395	59.099	59.616	-0.20016					33	13	3	0	0	0	0.027866	1	6794	6794		40.778	0	1	1505500			55465	14904	38689	38754	60799	60799					0.11680861670993181
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	602.789306640625	2	602.788901	1203.56325	-1.0924	-0.0006585	1.0792	0.00065053	-0.013227	-7.9732E-06	602.7896112192591	40.484	0.90963	40.484	40.176	41.085	0					66	25	4	0	0	0	0.002678	2	3561	3561;3573		186.41	76.291	1	4948400			55466	6694	38690	38755	60800;60801	60800					-0.030390336528625994
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	602.7891235351562	2	602.788901	1203.56325	0.19546	0.00011782	-0.16973	-0.00010231	0.025726	1.5507E-05	602.7887814900907	40.551	1.0759	40.439	40.055	41.131	-0.11223					75	29	4	0	0	0	0.002678	3	3555	3555;3567;3581		186.41	90.596	1	4830600			55467	6694	38690	38755	60802;60803;60804	60802					-0.030390336528625994
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	602.7887573242188	2	602.788901	1203.56325	-1.7495	-0.0010546	1.7473	0.0010533	-0.0022315	-1.3451E-06	602.7898804702828	40.657	0.90247	40.68	40.387	41.29	0.023006					75	25	4	0	0	0	0.002678	1	3541	3541		186.41	64.235	1	5176800			55468	6694	38690	38755	60805	60805					-0.030390336528625994
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	602.788901	1203.56325	-0.83662	-0.0005043	-4.2177	-0.0025424	-5.0543	-0.0030467	603.2862847787472	40.854	0.11606	40.718	40.635	40.752	-0.13554	0.13798	-0.0052079	NaN	186.41	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40522			55469	6694	38690	38755							-0.030390336528625994
NPRNIIEV	8	Unmodified	_NPRNIIEV_					0	0	0			REV__nc|ENSG00000083312|Q92973-3|TNPO1;REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2696838378906	2	477.771991	953.529429	0.060619	2.8962E-05	1.9593	0.00093608	2.0199	0.00096505	477.7719190571733	35.249	0.78406	35.249	34.785	35.57	0					39	20	3	0	0	0	0.027866	1	2729	2729		31.955	12.595	1	2293100	+		55470	21540;20712	38691	38756	60806	60806					0.05080589646047429
NPRNTEAVTL	10	Unmodified	_NPRNTEAVTL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.7958984375	2	557.796195	1113.57784	0.16982	9.4726E-05	-0.52374	-0.00029214	-0.35392	-0.00019741	557.79592990636	39.404	1.3086	39.404	39.006	40.314	0					98	36	5	0	0	0	0.34774	3	3387	3365;3387;3400		104.06	13.456	1	11603000			55471	137	38692	38757	60807;60808;60809	60808					0.02559038495292043
NPRNTEAVTL	10	Unmodified	_NPRNTEAVTL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.7963256835938	2	557.796195	1113.57784	-1.1288	-0.00062962	0.85905	0.00047917	-0.26971	-0.00015044	557.7967068918219	39.385	1.3771	39.287	38.949	40.326	-0.098755					102	37	5	0	0	0	0.37509	4	3361	3352;3361;3373;3386		101.25	16.092	1	11249000			55472	137	38692	38757	60810;60811;60812;60813	60811					0.02559038495292043
NPRNTEAVTL	10	Unmodified	_NPRNTEAVTL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.7958984375	2	557.796195	1113.57784	-0.67418	-0.00037605	0.34515	0.00019252	-0.32903	-0.00018353	557.7963709354082	39.553	1.5249	39.577	39.206	40.731	0.023727					106	42	4	0	0	0	0.26927	4	3346	3337;3346;3358;3372		112.41	32.698	1	11322000			55473	137	38692	38757	60814;60815;60816;60817	60815					0.02559038495292043
NPRPANNEEE	10	Unmodified	_NPRPANNEEE_					0	0	0		nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.818603515625	2	585.262716	1168.51088	1.1787	0.00068986	-1.2222	-0.00071529	-0.043442	-2.5425E-05	585.2619269575706	19.357	1.3863	19.124	18.333	19.72	-0.23345					53	27	3	0	0	0	0.03519	1	357	357		44.377	22.417	1	81996			55474	5219	38693	38758	60818	60818					-0.06663616786477178
NPRPGLGAL	9	Unmodified	_NPRPGLGAL_					0	0	0		ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.76177978515625	2	447.761426	893.5083	-0.31106	-0.00013928	0.93398	0.0004182	0.62293	0.00027892	447.76120963640057	45.163	0.92141	45.163	44.691	45.613	0					58	26	4	0	0	0	0.021668	2	4361	4361;4373		148.21	46.994	1	2445500			55475	12669	38694	38759	60819;60820	60819					0.05728624337200472
NPRPGLGAL	9	Unmodified	_NPRPGLGAL_					0	0	0		ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.76123046875	2	447.761426	893.5083	-0.39586	-0.00017725	3.7839	0.0016943	3.388	0.001517	447.76118144030426	45.264	0.9183	45.115	44.662	45.581	-0.1488					52	26	3	0	0	0	0.040175	1	4372	4372		133.47	28.2	1	1940300			55476	12669	38694	38759	60821	60821					0.05728624337200472
NPRPGLGAL	9	Unmodified	_NPRPGLGAL_					0	0	0		ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.76104736328125	2	447.761426	893.5083	-0.16257	-7.2794E-05	0.15021	6.7259E-05	-0.01236	-5.5344E-06	447.7612715657087	45.166	0.61617	45.21	44.93	45.546	0.043877					48	17	4	0	0	0	0.040175	1	4309	4309		133.47	44.826	1	2348700			55477	12669	38694	38759	60822	60822					0.05728624337200472
NPRPLILQI	9	Unmodified	_NPRPLILQI_					0	0	0			REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF	REV__ENST00000474293.2_1_6:127775237-127796815:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.3375854492188	2	532.334759	1062.65496	-0.24831	-0.00013218	2.9614	0.0015765	2.7131	0.0014443	532.3362410986954	106.87	0.34176	106.87	106.76	107.1	0.0018311					14	10	2	0	0	0	0.98697	1	13646	13646		23.042	3.939	1	134200	+		55478	33270	38695	38760	60823	60823					0.12614301502276248
NPRPTAQDL	9	Unmodified	_NPRPTAQDL_					0	0	0		DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4;nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant	DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.26470947265625	2	506.26453	1010.51451	-0.14053	-7.1144E-05	-0.24648	-0.00012478	-0.38701	-0.00019593	506.26432960611436	34.14	1.2016	34.136	33.449	34.651	-0.0045624					51	30	3	0	0	0	0.14024	1	2506	2506		101.6	38.294	1	1799400			55479	644	38696	38761	60824	60824					0.009670977780388057
NPRPTAQDL	9	Unmodified	_NPRPTAQDL_					0	0	0		DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4;nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant	DLGAP4|p.G883Yfs*7|1|0.42|ENSG00000080845|chr20:36525892-36525926|AGGGTTCTGGGACCTGCTACAGCTGTCCATCGAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.2645263671875	2	506.26453	1010.51451	-0.60513	-0.00030636	0.62821	0.00031804	0.023075	1.1682E-05	506.26462314540885	34.095	0.83746	34.145	33.844	34.682	0.050255					34	20	2	0	0	0	0.16638	1	2466	2466		95.815	5.0385	1	1742400			55480	644	38696	38761	60825	60825					0.009670977780388057
NPRQAAYEM	9	Oxidation (M)	_NPRQAAYEM(Oxidation (M))_		NPRQAAYEM(1)		NPRQAAYEM(100)	0	0	1		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2481689453125	2	548.248023	1094.48149	-1.0372	-0.00056863	1.1957	0.00065554	0.15852	8.6908E-05	548.2484645354621	24.896	0.87762	24.896	24.608	25.486	0					41	20	4	0	0	0	0.14024	1	1118	1118		101.6	23.657	1	672840			55481	1886	38697	38762	60826	60826		67			-0.061968523363248096
NPRQAAYEM	9	Oxidation (M)	_NPRQAAYEM(Oxidation (M))_		NPRQAAYEM(1)		NPRQAAYEM(120)	0	0	1		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.2479858398438	2	548.248023	1094.48149	-1.6569	-0.00090841	1.815	0.00099507	0.15806	8.6655E-05	548.2488295802428	24.959	0.85787	24.925	24.455	25.313	-0.034395					41	19	4	0	0	0	0.082191	1	1115	1115		116.9	51.006	1	746790			55482	1886	38697	38762	60827	60827		67			-0.061968523363248096
NPRRGHAV	8	Unmodified	_NPRRGHAV_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.28216552734375	2	453.754467	905.494381	-1.2229	-0.0005549	0.39179	0.00017778	-0.83112	-0.00037712	453.75696445674964	49.129	0.36874	49.204	49.06	49.428	0.074196					15	9	3	0	0	0	0.027866	1	4985	4985		54.765	8.8127	1	78773			55483	7803	38698	38763	60828	60828					0.03785391628753132
NPRRGIGP	8	Unmodified	_NPRRGIGP_					0	0	0		ENST00000433686.6_1_19:58595781-58596009:-|nuORF	ENST00000433686.6_1_19:58595781-58596009:-|nuORF	ENST00000433686.6_1_19:58595781-58596009:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.7516784667969	2	433.751393	865.488233	-0.11927	-5.1733E-05	0.42229	0.00018317	0.30302	0.00013143	433.7514853429107	20.01	1.9787	19.905	19.066	21.045	-0.10477					82	40	3	0	0	0	1.0133	1	448	448		35.201	1.6851	1	1132100			55484	14232	38699	38764	60829	60829					0.050108733972251684
NPRRMIIL	8	Unmodified	_NPRRMIIL_					0	0	0		ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	ENST00000223145.9_1_7:8126792-8127023:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2802429199219	2	506.807854	1011.60115	-1.2958	-0.00065671	-1.0268	-0.00052037	-2.3225	-0.0011771	506.80809157001676	49.422	1.1767	49.496	49.06	50.236	0.074192					38	24	3	0	0	0	0.027866	1	5111	5111		19.36	0	1	470700			55485	11198	38700	38765	60830	60830					0.09581805798916321
NPRRPALP	8	Unmodified	_NPRRPALP_					0	0	0		ENST00000529024.1_1_11:74700112-74729768:+|nuORF	ENST00000529024.1_1_11:74700112-74729768:+|nuORF	ENST00000529024.1_1_11:74700112-74729768:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2272644042969	2	460.774868	919.535184	-0.32223	-0.00014847	0.1274	5.8701E-05	-0.19483	-8.9773E-05	460.77472487821404	27.161	1.0186	27.148	26.334	27.352	-0.012981					54	25	3	0	0	0	0.027866	1	1468	1468		54.765	48.029	1	335560			55486	16198	38701	38766	60831	60831					0.0721973294835152
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.29010009765625	2	470.290351	938.566149	-0.37865	-0.00017807	-0.022154	-1.0419E-05	-0.4008	-0.00018849	470.2903111115177	28.017	1.3316	28.017	27.616	28.947	0					75	32	4	0	0	0	0.25032	4	1585	1575;1585;1609;1622		82.305	21.901	1	6756000			55487	1921	38702	38767	60832;60833;60834;60835	60833					0.09440886262598269
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2903747558594	2	470.290351	938.566149	-0.34848	-0.00016389	0.20757	9.7619E-05	-0.14091	-6.627E-05	470.29043431938436	28.026	1.2457	27.781	27.463	28.709	-0.24524					72	29	4	0	0	0	0.25032	4	1590	1590;1600;1612;1625		82.305	21.901	1	6271100			55488	1921	38702	38767	60836;60837;60838;60839	60836					0.09440886262598269
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.29058837890625	2	470.290351	938.566149	-0.64738	-0.00030446	0.54189	0.00025485	-0.10549	-4.9612E-05	470.29056172467494	27.873	1.2832	27.705	27.402	28.686	-0.16816					73	30	5	0	0	0	0.25032	2	1582	1582;1595		82.305	24.852	1	5857400			55489	1921	38702	38767	60840;60841	60840					0.09440886262598269
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2906494140625	2	470.290351	938.566149	-0.65685	-0.00030891	1.1375	0.00053496	0.48067	0.00022605	470.290825396664	28.02	1.1722	27.868	27.61	28.782	-0.15195					68	28	4	0	0	0	0.25032	4	1575	1564;1575;1587;1599		82.305	19.327	1	6332300			55490	1921	38702	38767	60842;60843;60844;60845	60843					0.09440886262598269
NPRYLGAW	8	Unmodified	_NPRYLGAW_					0	0	0		ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23;ENST00000471692.1_1_5:137527956-137534147:-|nuORF	ENSG00000094880|ENST00000394886|CDC23	ENSG00000094880|ENST00000394886|CDC23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2750549316406	2	488.753601	975.49265	-0.9982	-0.00048788	0.23678	0.00011573	-0.76142	-0.00037215	488.7535505273936	20.347	1.0193	20.347	20.127	21.146	0					32	20	2	0	0	0	0.027866	1	603	603		29.842	0.69198	1	138190			55491	2009	38703	38768	60846	60846					0.0039233782013070595
NPRYLGAW	8	Unmodified	_NPRYLGAW_					0	0	0		ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23;ENST00000471692.1_1_5:137527956-137534147:-|nuORF	ENSG00000094880|ENST00000394886|CDC23	ENSG00000094880|ENST00000394886|CDC23	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.753601	975.49265	0.6673	0.00032615	-1.0727	-0.00052428	-0.4054	-0.00019814	488.7527091124157	20.518	0.63996	20.587	20.316	20.956	0.068901	0.11416	-0.00075721	NaN	29.842	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51784			55492	2009	38703	38768							0.0039233782013070595
NPSARLFGF	9	Unmodified	_NPSARLFGF_					0	0	0			REV__IMMP1L|p.D150Y|1|0.14|ENSG00000148950|chr11:31432553-31432553|C/A|missense_variant	REV__IMMP1L|p.D150Y|1|0.14|ENSG00000148950|chr11:31432553-31432553|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7650451660156	2	504.766709	1007.51886	-1.1999	-0.00060565	-3.3338	-0.0016828	-4.5336	-0.0022884	504.76496920813327	20.728	1.0685	20.728	20.274	21.342	0					59	21	4	0	0	0	0.87448	1	589	589		34.173	5.023	1	756930	+		55493	24648	38704	38769	60847	60847					0.015406069916252818
NPSARLTAL	9	Unmodified	_NPSARLTAL_					0	0	0		ENSG00000115170|ENST00000434821|ACVR1;ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000115170|ENST00000434821|ACVR1	ENSG00000115170|ENST00000434821|ACVR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7707824707031	2	471.771991	941.529429	-0.31433	-0.00014829	-0.22627	-0.00010675	-0.54059	-0.00025504	471.77173011053054	45.12	0.5845	44.971	44.662	45.247	-0.1488					38	16	3	0	0	0	0.26413	1	4349	4349		80.455	6.1996	1	2053900			55494	3415	38705	38770	60848	60848					0.056325896460293734
NPSASLLPTP	10	Unmodified	_NPSASLLPTP_					0	0	0		nc|ENSG00000172159|A2A2Y4-4|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3;nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7713623046875	2	498.771657	995.528761	0.21295	0.00010622	-1.5928	-0.00079443	-1.3798	-0.00068822	498.7707660735286	104.97	1.7566	104.97	104.34	106.1	-0.0016022					133	55	5	0	0	0	1.089	1	13379	13379		34.173	2.6427	1	5105000			55495	8247	38706	38771	60849	60849					0.030817502063200664
NPSDLANGF	9	Unmodified	_NPSDLANGF_					0	0	0			REV__ENST00000533796.1_1_11:755745-760254:+|nuORF	REV__ENST00000533796.1_1_11:755745-760254:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	467.71533203125	2	467.716882	933.41921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.837	1	25.917	25.417	26.417	0.08009								0	0	0	0.5395	1	1211	1211		47.657	1.7054	1		+		55496	34621	38707	38772	60850	60850					-0.05016255412999726
NPSENRSLL	9	Unmodified	_NPSENRSLL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2689208984375	2	515.269813	1028.52507	-1.1193	-0.00057673	-0.22466	-0.00011576	-1.3439	-0.00069249	515.2696016504129	37.972	0.84951	37.889	37.603	38.453	-0.082516					44	23	2	0	0	0	0.16539	1	3137	3137		96.034	21.779	1	2899100			55497	4177	38708	38773	60851	60851					0.011950804324669662
NPSENRSLL	9	Unmodified	_NPSENRSLL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2685546875	2	515.269813	1028.52507	-1.9486	-0.001004	0.66178	0.00034099	-1.2868	-0.00066304	515.2699816191855	38.114	0.76261	38.141	37.849	38.612	0.027279					53	21	4	0	0	0	0.16638	1	3115	3115		95.815	10.9	1	2673600			55498	4177	38708	38773	60852	60852					0.011950804324669662
NPSENRSLL	9	Unmodified	_NPSENRSLL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.269813	1028.52507	-1.5357	-0.00079129	0.18167	9.3608E-05	-1.354	-0.00069769	515.2697819782836	38.068	0.87699	38.068	37.803	38.68	0	0.035141	3.8014E-05	NaN	96.034	50	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3003500			55499	4177	38708	38773							0.011950804324669662
NPSFKRLM	8	Oxidation (M)	_NPSFKRLM(Oxidation (M))_		NPSFKRLM(1)		NPSFKRLM(94)	0	0	1		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7667236328125	2	504.768394	1007.52224	-0.19713	-9.9504E-05	-3.8476	-0.0019422	-4.0448	-0.0020417	504.76647041137096	63.593	2.0499	63.4	62.738	64.788	-0.19243					167	51	5	0	0	0	0.42327	2	7164	7164;7259		94.006	16.26	1	34087000			55500	4653	38709	38774	60853;60854	60853		184			0.018775337739725728
NPSGIINL	8	Unmodified	_NPSGIINL_					0	0	0		ENST00000526577.5_1_11:44088110-44095068:+|nuORF;nc|ENSG00000110455|Q96QU6-2|ACCS;ENSG00000110455|ENST00000263776|ACCS	ENST00000526577.5_1_11:44088110-44095068:+|nuORF	ENST00000526577.5_1_11:44088110-44095068:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2129211425781	2	414.23471	826.454868	-0.16457	-6.817E-05	1.795	0.00074354	1.6304	0.00067537	414.238800729298	29.238	0.78889	29.241	28.883	29.672	0.0031357					48	19	4	0	0	0	0.027866	1	1774	1774		25.45	4.9683	1	477710			55501	16126	38710	38775	60855	60855					0.03469826834657397
NPSLKHTL	8	Unmodified	_NPSLKHTL_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.26129150390625	2	455.261259	908.507966	-0.75629	-0.00034431	-0.0087296	-3.9742E-06	-0.76502	-0.00034828	455.26144087272	29.413	1.363	29.168	28.881	30.244	-0.24524					76	31	5	0	0	0	0.28835	4	1805	1782;1794;1805;1820		116.9	53.597	1	3632900			55502	18304	38711	38776	60856;60857;60858;60859	60858					0.050052046173163944
NPSLKHTL	8	Unmodified	_NPSLKHTL_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.26129150390625	2	455.261259	908.507966	-0.57051	-0.00025973	-0.12261	-5.582E-05	-0.69312	-0.00031555	455.2613513868366	29.313	1.399	29.141	28.85	30.249	-0.17258					103	32	7	0	0	0	0.25873	3	1779	1767;1779;1791		129.68	55.708	1	3771400			55503	18304	38711	38776	60860;60861;60862	60861					0.050052046173163944
NPSLKHTL	8	Unmodified	_NPSLKHTL_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.26104736328125	2	455.261259	908.507966	-0.20054	-9.13E-05	-0.5709	-0.00025991	-0.77145	-0.00035121	455.2611740098456	29.307	0.92303	29.158	28.869	29.792	-0.14952					85	21	7	0	0	0	0.18427	4	1756	1747;1756;1767;1780		143.11	69.132	1	3963300			55504	18304	38711	38776	60863;60864;60865;60866	60864					0.050052046173163944
NPSLMSPECL	10	Unmodified	_NPSLMSPECL_					0	0	0		nc|ENSG00000139323|Q8TC44-2|POC1B;ENSG00000139323|ENST00000313546|POC1B;ENST00000549591.1_1_12:89814932-89819198:-|nuORF;ENST00000546740.5_1_12:89814932-89855458:-|nuORF	nc|ENSG00000139323|Q8TC44-2|POC1B	nc|ENSG00000139323|Q8TC44-2|POC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8106079101562	2	545.74901	1089.48347	-0.43819	-0.00023914	-2.656	-0.0014495	-3.0942	-0.0016886	545.7479070779827	70.414	0.45178	70.142	69.741	70.193	-0.27185					14	10	2	0	0	0	0.03519	1	8162	8162		24.519	4.5224	1	84155			55505	5324	38712	38777	60867	60867					-0.05769559642726563
NPSNLLELY	9	Unmodified	_NPSNLLELY_					0	0	0		ENSG00000205765|ENST00000381647|RIMOC1;ENST00000505931.6_1_5:41907875-41908458:+|nuORF;ENST00000509976.1_1_5:41904493-41911314:+|nuORF	ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3219604492188	2	531.776939	1061.53933	-1.6063	-0.0008542	3.7042	0.0019698	2.0979	0.0011156	531.7788139966357	75.276	0.38251	75.276	74.995	75.378	0					15	9	2	0	0	0	0.024447	1	9230	9230		40.778	5.6261	1	722120			55506	10445	38713	38778	60868	60868					0.011017328607522359
NPSPYHLYY	9	Unmodified	_NPSPYHLYY_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2689819335938	2	577.269281	1152.52401	-0.099437	-5.7402E-05	-0.12083	-6.9754E-05	-0.22027	-0.00012716	577.269155175741	63.645	1.5191	63.417	63.095	64.614	-0.22773					98	38	4	0	0	0	0.33245	1	7181	7181		71.296	0	1	8629400			55507	957	38714	38779	60869	60869					-0.046151339364541855
NPSPYHLYY	9	Unmodified	_NPSPYHLYY_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2698974609375	2	577.269281	1152.52401	-0.011353	-6.5538E-06	-0.35411	-0.00020441	-0.36546	-0.00021097	577.2690365532111	63.719	1.7363	63.461	63.162	64.898	-0.25824					105	44	3	0	0	0	0.35646	2	7187	7187;7211		68.787	2.9837	1	9388000			55508	957	38714	38779	60870;60871	60870					-0.046151339364541855
NPTHYWTL	8	Unmodified	_NPTHYWTL_					0	0	0			REV__ENST00000574728.1_1_17:1583983-1584260:-|nuORF;REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2674560546875	2	516.250892	1030.48723	-0.81148	-0.00041893	2.8896	0.0014918	2.0781	0.0010728	516.2507006655197	31.859	2.3243	31.928	30.829	33.153	0.06896					182	58	5	0	0	0	0.027866	1	2015	2015		30.504	0	1	1333600	+		55509	26845;35451	38715	38780	60872	60872					-0.026793857623488293
NPTKTEFV	8	Unmodified	_NPTKTEFV_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.244873046875	2	468.245275	934.475997	-0.29637	-0.00013877	-0.71762	-0.00033602	-1.014	-0.00047479	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	1.0239	1	13248	13248		33.516	1.5607	1	6721300	+		55510	28480	38716	38781	60873	60873					0.006137921435197313
NPTKTEFV	8	Unmodified	_NPTKTEFV_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.2451477050781	2	468.245275	934.475997	0.20109	9.4162E-05	-1.2222	-0.00057229	-1.0211	-0.00047813	468.2445715077833	103.12	2.3598	103.12	102.32	104.68	0.0054245					123	59	5	0	0	0	0.99042	1	13208	13208		38.806	1.647	1	6608800	+		55511	28480	38716	38781	60874	60874					0.006137921435197313
NPTKTEFV	8	Unmodified	_NPTKTEFV_					0	0	0			REV__ENSG00000198795|ENST00000361524|ZNF521	REV__ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.24505615234375	2	468.245275	934.475997	0.84537	0.00039584	-1.803	-0.00084423	-0.9576	-0.00044839	468.2442937403857	103.2	1.893	103.19	102.28	104.18	-0.0046005					118	45	4	0	0	0	0.99042	1	13150	13150		38.806	4.6336	1	6166300	+		55512	28480	38716	38781	60875	60875					0.006137921435197313
NPTLLQLPLAA	11	Unmodified	_NPTLLQLPLAA_					0	0	0		ENST00000524317.1_1_11:9042594-9047435:-|nuORF	ENST00000524317.1_1_11:9042594-9047435:-|nuORF	ENST00000524317.1_1_11:9042594-9047435:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.84326171875	2	575.845156	1149.67576	-2.0743	-0.0011945	-1.718	-0.00098928	-3.7922	-0.0021837	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.0183	1	11554	11554		32.751	0.79567	1	5238400			55513	16059	38717	38782	60876	60876					0.10690847091314026
NPTLLQLPLAA	11	Unmodified	_NPTLLQLPLAA_					0	0	0		ENST00000524317.1_1_11:9042594-9047435:-|nuORF	ENST00000524317.1_1_11:9042594-9047435:-|nuORF	ENST00000524317.1_1_11:9042594-9047435:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8428955078125	2	575.845156	1149.67576	-1.2575	-0.00072414	-2.5466	-0.0014665	-3.8042	-0.0021906	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	0.98542	1	11339	11339		40.058	3.6114	1	6251500			55514	16059	38717	38782	60877	60877					0.10690847091314026
NPTLRVYL	8	Unmodified	_NPTLRVYL_					0	0	0		ENST00000459737.5_1_14:56078878-56079043:+|nuORF	ENST00000459737.5_1_14:56078878-56079043:+|nuORF	ENST00000459737.5_1_14:56078878-56079043:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2879638671875	2	488.284734	974.554916	-0.17007	-8.304E-05	-3.692	-0.0018027	-3.8621	-0.0018858	488.2827935824446	21.109	0.39307	21.18	20.959	21.352	0.071487					13	7	2	0	0	0	0.027866	1	553	553		25.45	6.0902	1	75237			55515	14632	38718	38783	60878	60878					0.06662064168460802
NPTPVLSTASV	11	Unmodified	_NPTPVLSTASV_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.30810546875	2	543.295496	1084.57644	-1.1165	-0.00060658	-3.6072	-0.0019598	-4.7237	-0.0025663	543.7939979775038	79.808	0.20924	79.83	79.729	79.938	0.021439					5	4	2	0	0	0	0.024787	1	9844	9844		49.536	12.508	1	67586	+		55516	25648	38719	38784	60879	60879					0.03753404406529626
NPTRLPLNL	9	Unmodified	_NPTRLPLNL_					0	0	0			REV__ENST00000391895.6_2_1:215259719-215259836:+|nuORF	REV__ENST00000391895.6_2_1:215259719-215259836:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.2606201171875	2	519.308741	1036.60293	-0.53719	-0.00027897	-0.15261	-7.9252E-05	-0.6898	-0.00035822	519.3086012082754	57.529	0.4548	57.529	57.148	57.603	0					22	11	3	0	0	0	0.024418	1	6488	6488		45.972	18.09	1	235850	+		55517	31586	38720	38785	60880	60880					0.08609138088513646
NPVCIVWR	8	Unmodified	_NPVCIVWR_					0	0	0		ENST00000473125.5_1_15:34691374-34692921:-|nuORF	ENST00000473125.5_1_15:34691374-34692921:-|nuORF	ENST00000473125.5_1_15:34691374-34692921:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2884826660156	2	493.765655	985.516756	-1.0551	-0.00052095	-3.2306	-0.0015952	-4.2856	-0.0021161	493.76396460756615	22.363	0.61723	22.437	22.22	22.837	0.073954					18	12	2	0	0	0	0.027866	1	718	718		26.796	0	1	88046			55518	15002	38721	38786	60881	60881					0.0234185498215993
NPVCRETK	8	Unmodified	_NPVCRETK_					0	0	0		ENSG00000066926|ENST00000262093|FECH;nc|ENSG00000066926|P22830-2|FECH	ENSG00000066926|ENST00000262093|FECH	ENSG00000066926|ENST00000262093|FECH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.76165771484375	2	473.742376	945.4702	0.12832	6.0789E-05	-3.5251	-0.00167	-3.3967	-0.0016092	473.7406860873002	32.75	0.33373	32.75	32.569	32.903	0					15	8	2	0	0	0	0.027866	1	2310	2310		40.573	0	1	147680			55519	1348	38722	38787	60882	60882					-0.0047162963979872075
NPVIAELSQA	10	Unmodified	_NPVIAELSQA_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7379150390625	2	521.282389	1040.55022	-0.91487	-0.00047691	2.303	0.0012005	1.3882	0.00072363	521.2839270160057	61.833	0.46583	61.896	61.622	62.087	0.062767					18	11	2	0	0	0	0.03519	1	7092	7092		35.152	8.1047	1	395250			55520	10304	38723	38788	60883	60883					0.031571352350511006
NPVKRKMS	8	Unmodified	_NPVKRKMS_					0	0	0		ENST00000541562.5_2_6:30882981-30883968:+|nuORF	ENST00000541562.5_2_6:30882981-30883968:+|nuORF	ENST00000541562.5_2_6:30882981-30883968:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2779541015625	2	480.276386	958.53822	0.11004	5.2852E-05	2.1715	0.0010429	2.2816	0.0010958	480.27825274250324	81.345	1.0948	81.151	81.05	82.144	-0.19334					32	25	2	0	0	0	0.027866	1	9877	9877		19.36	12.167	1	391580			55521	16440	38724	38789	60884	60884					0.05729240010873582
NPVLNLALPSL	11	Unmodified	_NPVLNLALPSL_					0	0	0			REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	575.845156	1149.67576	-0.26488	-0.00015253	-3.539	-0.0020379	-3.8039	-0.0021904	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	0.99129	1	11464	11464		38.754	7.2238	1	4946400	+		55522	31655	38725	38790	60885	60885					0.10690847091291289
NPVLNLALPSL	11	Unmodified	_NPVLNLALPSL_					0	0	0			REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8429565429688	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	0.9728	1	11314	11314		42.864	0	1	6382400	+		55523	31655	38725	38790	60886	60886					0.10690847091291289
NPVPPKLPTS	10	Unmodified	_NPVPPKLPTS_					0	0	0			REV__ENSG00000113615|ENST00000398844|SEC24A	REV__ENSG00000113615|ENST00000398844|SEC24A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7830810546875	2	525.303124	1048.5917	-1.4164	-0.00074403	-1.3364	-0.00070201	-2.7528	-0.001446	525.3022876055869	20.218	0.73362	20.218	19.782	20.516	0					28	14	4	0	0	0	0.03519	1	465	465		26.693	2.4902	1	154350	+		55524	22078	38726	38791	60887	60887					0.06934315994362805
NPVSLRPAL	9	Unmodified	_NPVSLRPAL_					0	0	0			REV__ENST00000226094.9_1_17:66537075-66550928:-|nuORF	REV__ENST00000226094.9_1_17:66537075-66550928:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.3059387207031	2	483.790184	965.565815	-0.98794	-0.00047795	2.4573	0.0011888	1.4693	0.00071085	483.79159412242115	30.815	0.32997	30.815	30.717	31.047	0					10	7	2	0	0	0	0.024466	1	2007	2007		39.253	3.6345	1	28610	+		55525	21771	38727	38792	60888	60888					0.08165466542754984
NPVSLWANPK	10	Unmodified	_NPVSLWANPK_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	562.7568969726562	2	563.306198	1124.59784	-0.61499	-0.00034643	-3.1404	-0.001769	-3.7553	-0.0021154	563.3042085783189	32.396	0.45169	32.459	32.238	32.69	0.062885					15	11	2	0	0	0	0.03519	1	2167	2167		64.207	19.185	1	182590			55526	16479	38728	38793	60889	60889					0.040528342258767225
NPVSLWANPK	10	Unmodified	_NPVSLWANPK_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.306198	1124.59784	-0.88314	-0.00049748	-3.455	-0.0019462	-4.3382	-0.0024437	563.3041502494044	32.637	0.44643	32.637	32.457	32.903	0	0.089217	-0.00026207	NaN	54.776	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181410			55527	16479	38728	38793							0.040528342258767225
NPVSRKNV	8	Unmodified	_NPVSRKNV_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.281494140625	2	457.264333	912.514114	-0.085272	-3.8992E-05	0.1241	5.6745E-05	0.038825	1.7753E-05	457.2643209856965	84.04	1.2706	84.04	83.605	84.876	0					53	29	3	0	0	0	0.027866	1	10479	10479		44.117	10.601	1	502880			55528	8707	38729	38794	60890	60890					0.05435722848858404
NPVVKARR	8	Unmodified	_NPVVKARR_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.29608154296875	2	470.295968	938.577383	2.5609	0.0012044	-3.2265	-0.0015174	-0.66562	-0.00031304	470.2945978495062	18.552	1.1784	18.552	18.284	19.463	0					56	23	4	0	0	0	1.0239	1	293	293		33.516	3.0119	1	4513700			55529	9701	38730	38795	60891	60891					0.10563708356744428
NPWGLDTN	8	Unmodified	_NPWGLDTN_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2379150390625	2	458.711599	915.408646	-0.91647	-0.00042039	1.6092	0.00073817	0.69275	0.00031777	458.71216746912114	35.469	0.35255	35.447	35.196	35.549	-0.021767					11	8	2	0	0	0	0.027866	1	2723	2723		10.265	3.9526	1	47518	+		55530	23462	38731	38796	60892	60892					-0.05244238067439255
NPYHHIQIN	9	Unmodified	_NPYHHIQIN_					0	0	0			REV__ENSG00000120708|ENST00000442011|TGFBI	REV__ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.290771484375	2	568.285797	1134.55704	-0.61766	-0.00035101	2.2827	0.0012972	1.665	0.00094622	568.2855975383414	60.351	0.7189	60.137	59.924	60.643	-0.21339					24	18	2	0	0	0	0.024506	1	6883	6883		10.866	0	1	402800	+		55531	22553	38732	38797	60893	60893					-0.0048550709368555545
NPYILHLL	8	Unmodified	_NPYILHLL_					0	0	0		ENST00000451422.1_1_3:15837910-15837979:-|nuORF	ENST00000451422.1_1_3:15837910-15837979:-|nuORF	ENST00000451422.1_1_3:15837910-15837979:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.782958984375	2	491.789653	981.564752	0.16022	7.8794E-05	2.8551	0.0014041	3.0153	0.0014829	491.7908945734224	78.307	0.55673	78.152	77.914	78.47	-0.15592					30	12	3	0	0	0	0.027866	1	9308	9308		39.021	0	1	468430			55532	14520	38733	38798	60894	60894					0.07323252173853234
NPYITVRSD	9	Unmodified	_NPYITVRSD_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8186645507812	2	532.772188	1063.52982	0.33085	0.00017627	-1.3939	-0.00074262	-1.063	-0.00056635	532.7714966931629	85.688	0.79838	85.688	85.372	86.171	0					45	18	4	0	0	0	0.024021	1	10722	10722		58.782	18.004	1	294620			55533	5635	38734	38799	60895	60895					0.0005996457523451681
NPYITVRSD	9	Unmodified	_NPYITVRSD_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.772188	1063.52982	-1.1313	-0.00060272	-0.12622	-6.7248E-05	-1.2575	-0.00066996	532.7722187616099	85.587	0.66158	85.612	85.326	85.988	0.024857	0.035134	0.00057015	NaN	58.782	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262930			55534	5635	38734	38799							0.0005996457523451681
NPYLCSNECD	10	Unmodified	_NPYLCSNECD_					0	0	0		nc|ENSG00000196358|Q96CW9-2|NTNG2;ENSG00000196358|ENST00000393229|NTNG2	nc|ENSG00000196358|Q96CW9-2|NTNG2	nc|ENSG00000196358|Q96CW9-2|NTNG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7628784179688	2	579.215531	1156.41651	-0.80268	-0.00046492	1.3542	0.00078437	0.55151	0.00031945	579.2161490716828	39.937	0.30601	39.707	39.585	39.891	-0.2302					12	7	2	0	0	0	0.03519	1	3389	3389		10.265	0	1	110140			55535	9856	38735	38800	60896	60896					-0.1554421492446636
NPYSKWAI	8	Unmodified	_NPYSKWAI_					0	0	0		ATM|p.D1053N|1|0.23|ENSG00000149311|chr11:108272725-108272725|G/A|missense_variant	ATM|p.D1053N|1|0.23|ENSG00000149311|chr11:108272725-108272725|G/A|missense_variant	ATM|p.D1053N|1|0.23|ENSG00000149311|chr11:108272725-108272725|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2750549316406	2	489.75581	977.497067	0.22501	0.0001102	0.64792	0.00031732	0.87293	0.00042752	489.75599275724414	19.62	1.7805	19.62	19.366	21.146	0					66	36	4	0	0	0	0.027866	1	603	603		25.45	0	1	574700			55536	147	38736	38801	60897	60897					0.007418022430556448
NQAKYSAETE	10	Unmodified	_NQAKYSAETE_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.7796630859375	2	570.762017	1139.50948	1.4019	0.00080017	1.6771	0.00095725	3.0791	0.0017574	570.7622375532313	36.342	0.65319	36.144	35.843	36.496	-0.19829					21	16	2	0	0	0	0.03519	1	2827	2827		18.262	0	1	95835	+		55537	23544	38737	38802	60898	60898					-0.05469250875216858
NQALCTYVGA	10	Unmodified	_NQALCTYVGA_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2638549804688	2	520.247492	1038.48043	0.37883	0.00019709	-1.6216	-0.00084365	-1.2428	-0.00064657	520.2460401049095	57.48	0.71256	57.277	57.064	57.777	-0.20208					38	18	4	0	0	0	0.03519	1	6303	6303		26.693	12.918	1	147490	+		55538	24957	38738	38803	60899	60899					-0.037270667052325734
NQALRLRA	8	Unmodified	_NQALRLRA_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2842102050781	2	471.2856	940.556647	0.59444	0.00028015	0.59024	0.00027817	1.1847	0.00055832	471.2855836918172	98.716	0.39285	98.726	98.564	98.957	0.010231					15	8	2	0	0	0	0.027866	1	12607	12607		18.324	0	1	65500			55539	913	38739	38804	60900	60900					0.08399117977069182
NQALRVAQK	9	Unmodified	_NQALRVAQK_					0	0	0			REV__ENSG00000166170|ENST00000299204|BAG5	REV__ENSG00000166170|ENST00000299204|BAG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2608642578125	2	514.30399	1026.59343	-1.4202	-0.00073041	0.90789	0.00046693	-0.5123	-0.00026348	514.3043661182058	30.361	0.57905	30.361	30.096	30.675	0					30	12	3	0	0	0	0.024457	1	1914	1914		29.15	11.785	1	346650	+		55540	25985	38740	38805	60901	60901					0.0811936980298924
NQALRVAQK	9	Unmodified	_NQALRVAQK_					0	0	0			REV__ENSG00000166170|ENST00000299204|BAG5	REV__ENSG00000166170|ENST00000299204|BAG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2608032226562	2	514.30399	1026.59343	-1.1385	-0.00058553	0.65192	0.00033528	-0.48658	-0.00025025	514.3042455924655	29.505	0.59868	29.584	29.284	29.883	0.078346					41	14	4	0	0	0	0.024436	1	1786	1786		38.806	15.764	1	2425000	+		55541	25985	38740	38805	60902	60902					0.0811936980298924
NQARLEQVI	9	Unmodified	_NQARLEQVI_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.8006591796875	2	535.80128	1069.58801	-0.2387	-0.0001279	-0.051848	-2.778E-05	-0.29055	-0.00015568	535.801218117727	41.325	1.3115	41.202	40.618	41.93	-0.12317					97	36	4	0	0	0	0.20967	1	3676	3676		87.754	0.057861	1	5682500			55542	8681	38741	38806	60903	60903					0.05599646220525756
NQARPNEKT	9	Unmodified	_NQARPNEKT_					0	0	0			REV__ENST00000354309.4_1_19:57760014-57764485:+|nuORF	REV__ENST00000354309.4_1_19:57760014-57764485:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.822509765625	2	529.272887	1056.53122	-0.49448	-0.00026172	-3.5886	-0.0018993	-4.083	-0.002161	529.2708105221102	55.023	0.38473	55.023	54.831	55.216	0					16	10	2	0	0	0	0.024292	1	6058	6058		25.574	0	1	182890	+		55543	30752	38742	38807	60904	60904					0.0052159866399961174
NQCFGGEYM	9	Unmodified	_NQCFGGEYM_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.81005859375	2	524.696777	1047.379	-1.144	-0.00060028	-0.71352	-0.00037438	-1.8576	-0.00097466	524.6961533953452	55.697	0.43621	55.54	55.312	55.748	-0.15655					18	11	2	0	0	0	0.024541	1	6025	6025		23.042	12.777	1	99124			55544	4051;3357	38743	38808	60905	60905					-0.14279261399428833
NQCFNRIF	8	Unmodified	_NQCFNRIF_					0	0	0		ENST00000371835.8_1_19:15357923-15358298:-|nuORF	ENST00000371835.8_1_19:15357923-15358298:-|nuORF	ENST00000371835.8_1_19:15357923-15358298:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2637939453125	2	521.250369	1040.48618	-0.38974	-0.00020315	-2.3675	-0.001234	-2.7572	-0.0014372	521.2490378704806	57.802	0.39064	57.568	57.349	57.74	-0.23363					11	9	2	0	0	0	0.027866	1	6310	6310		26.796	2.5934	1	107900			55545	13016	38744	38809	60906	60906					-0.03243923402897053
NQCKEEII	8	Unmodified	_NQCKEEII_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.77801513671875	2	488.742042	975.469531	0.68902	0.00033675	-1.2546	-0.00061319	-0.56561	-0.00027644	488.7411564558194	51.838	1.2954	51.654	51.058	52.354	-0.18404					58	33	2	0	0	0	0.027866	1	5281	5281		40.573	6.4001	1	154260	+		55546	20191	38745	38810	60907	60907					-0.019184690794986636
NQCLREELGAQ	11	Unmodified	_NQCLREELGAQ_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.5205078125	3	420.871555	1259.59283	-0.15662	-6.5918E-05	1.9058	0.0008021	1.7492	0.00073618	420.87167004556426	31.579	0.38806	31.426	31.269	31.657	-0.15231					17	9	3	0	0	0	0.024734	1	2125	2125		14.243	2.3109	1	42267			55547	9029	38746	38811	60908	60908					-0.026578376990300967
NQCPKRQCADY	11	Unmodified	_NQCPKRQCADY_					0	0	0			REV__ENSG00000187957|ENST00000341772|DNER	REV__ENSG00000187957|ENST00000341772|DNER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.25341796875	3	442.529023	1324.56524	-0.2232	-9.8774E-05	3.7624	0.001665	3.5392	0.0015662	442.5304091409207	45.495	0.4627	45.284	45.056	45.519	-0.21109					26	13	3	0	0	0	0.024759	1	4287	4287		17.833	0	1	258260	+		55548	27996	38747	38812	60909	60909					-0.08406064230894117
NQCQHRKDE	9	Unmodified	_NQCQHRKDE_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.2896728515625	2	579.259453	1156.50435	-0.33535	-0.00019425	2.4126	0.0013975	2.0772	0.0012033	579.7614158523867	78.605	0.81178	78.449	78.085	78.897	-0.15591					26	18	2	0	0	0	0.024511	1	9428	9428		32.812	10.853	1	93545	+		55549	20681	38748	38813	60910	60910					-0.06763833218815307
NQDAKNYHA	9	Unmodified	_NQDAKNYHA_					0	0	0		ENST00000530657.1_1_11:85906626-85907241:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7637329101562	2	530.743962	1059.47337	0.29543	0.0001568	-1.4517	-0.00077047	-1.1563	-0.00061368	530.7434665561738	82.113	0.29811	81.884	81.65	81.948	-0.2289					9	6	2	0	0	0	0.024354	1	9850	9850		47.916	15.103	1	109780			55550	7833	38749	38814	60911	60911					-0.05398663261439651
NQDIKRLI	8	Unmodified	_NQDIKRLI_					0	0	0			REV__nc|ENSG00000154556|O94875-7|SORBS2;REV__RWDD4-SORBS2|5|fusion;REV__nc|ENSG00000154556|O94875-10|SORBS2	REV__RWDD4-SORBS2|5|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7909240722656	2	500.300916	998.587279	-0.47	-0.00023514	-2.016	-0.0010086	-2.486	-0.0012438	500.29955554163905	29.857	0.5954	29.707	29.584	30.18	-0.14952					22	13	2	0	0	0	0.027866	1	1836	1836		29.15	0	1	623060	+		55551	24966;37453;36801	38750	38815	60912	60912					0.08792851571456595
NQDKEKLLQ	9	Unmodified	_NQDKEKLLQ_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2608032226562	2	558.306395	1114.59824	-0.13527	-7.5523E-05	3.409	0.0019032	3.2737	0.0018277	558.3082117364282	42.816	1.014	42.816	42.497	43.511	0					45	27	2	0	0	0	0.024397	1	4072	4072		31.53	4.8369	1	1561800			55552	1292	38751	38816	60913	60913					0.04552209155099263
NQDLLAQED	9	Unmodified	_NQDLLAQED_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3255004882812	2	523.24346	1044.47237	0.37581	0.00019664	-1.1275	-0.00058993	-0.75164	-0.00039329	523.2430114141198	81.18	0.65749	80.987	80.72	81.377	-0.19334					27	15	2	0	0	0	0.024539	1	9727	9727		14.865	0	1	254860	+		55553	19813	38752	38817	60914	60914					-0.048089224209888926
NQDLLTMTA	9	Unmodified	_NQDLLTMTA_					0	0	0			REV__ENSG00000141434|ENST00000269202|MEP1B	REV__ENSG00000141434|ENST00000269202|MEP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.2909240722656	2	503.747324	1005.4801	-0.42965	-0.00021644	-0.1328	-6.6899E-05	-0.56246	-0.00028334	503.74657161068	54.875	0.59524	54.729	54.495	55.09	-0.14609					17	15	2	0	0	0	0.024367	1	5845	5845		22.58	6.9378	1	97209	+		55554	24086	38753	38818	60915	60915					-0.022424864250638166
NQDPKLSIK	9	Unmodified	_NQDPKLSIK_					0	0	0			REV__ENST00000590806.5_1_19:10919298-10919727:+|nuORF	REV__ENST00000590806.5_1_19:10919298-10919727:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7896728515625	2	521.798206	1041.58186	-0.3423	-0.00017861	4.162	0.0021717	3.8197	0.0019931	521.8001041212177	84.41	1.119	84.41	84.128	85.247	0					64	26	3	0	0	0	0.024374	1	10551	10551		49.442	0	1	582930	+		55555	35709	38754	38819	60916	60916					0.0627312798899311
NQDVVLLLL	9	Unmodified	_NQDVVLLLL_					0	0	0		ENSG00000189339|ENST00000617444|SLC35E2B;ENST00000355439.6_1_1:1656764-1666265:-|nuORF;ENST00000480991.1_1_1:1597223-1601267:-|nuORF	ENSG00000189339|ENST00000617444|SLC35E2B	ENSG00000189339|ENST00000617444|SLC35E2B	MSMS	OPSCC_39_ClassI_Rep-2	2	513.816162109375	2	513.813325	1025.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.461	1	60.248	59.748	60.748	-0.21339								0	0	0	0.3606	1	6920	6920		64.207	5.9773	1				55556	9805	38755	38820	60917	60917					0.10031486654202126
NQEKELELS	9	Unmodified	_NQEKELELS_					0	0	0			REV__ENSG00000164366|ENST00000296824|CCDC127	REV__ENSG00000164366|ENST00000296824|CCDC127	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2760009765625	2	545.274761	1088.53497	-0.96677	-0.00052716	0.24479	0.00013348	-0.72198	-0.00039368	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.6238	1	9457	9457		51.193	1.7511	1	52905000	+		55557	25748	38756	38821	60918	60918					-0.00575776352820867
NQEKGWGR	8	Unmodified	_NQEKGWGR_					0	0	0		ENST00000373578.6_1_20:36031891-36032098:+|nuORF	ENST00000373578.6_1_20:36031891-36032098:+|nuORF	ENST00000373578.6_1_20:36031891-36032098:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7458190917969	2	487.743765	973.472977	0.4038	0.00019695	3.098	0.001511	3.5018	0.001708	487.7451537039388	16.873	0.44964	16.726	16.594	17.043	-0.14753					23	15	2	0	0	0	1.0574	1	93	93		18.324	0	1	79635			55558	13079	38757	38822	60919	60919					-0.014820381906133662
NQEPVCFGFA	10	Unmodified	_NQEPVCFGFA_					0	0	0			REV__ENST00000336617.7_1_13:51530690-51530858:+|nuORF	REV__ENST00000336617.7_1_13:51530690-51530858:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7689819335938	2	556.247492	1110.48043	-0.75985	-0.00042267	4.1306	0.0022976	3.3708	0.001875	556.2497048097026	38.253	0.1251	38.034	37.957	38.083	-0.21848					6	3	2	0	0	0	0.03519	1	3117	3117		32.812	0	1	481130	+		55559	30549	38758	38823	60920	60920					-0.07039066705192454
NQERHLSTD	9	Unmodified	_NQERHLSTD_					0	0	0			REV__ENST00000587038.2_2_7:129666226-129666358:+|nuORF	REV__ENST00000587038.2_2_7:129666226-129666358:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.322265625	2	550.259976	1098.5054	0.13379	7.3619E-05	4.283	0.0023568	4.4168	0.0024304	550.2619872460799	47.452	0.58831	47.182	46.801	47.389	-0.26939					24	15	2	0	0	0	0.024477	1	4621	4621		20.947	0	1	174190	+		55560	35618	38759	38824	60921	60921					-0.0399129557829383
NQFIKELKD	9	Unmodified	_NQFIKELKD_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.81103515625	2	567.811313	1133.60807	0.3344	0.00018988	-1.4225	-0.00080772	-1.0881	-0.00061784	567.8103965361772	69.529	1.6331	69.236	68.405	70.038	-0.29292					131	41	6	0	0	0	0.071379	1	8316	8316		120.87	13.861	1	12873000	+		55561	21934	38760	38825	60922	60922					0.04661397160475644
NQFIKELKD	9	Unmodified	_NQFIKELKD_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3088989257812	2	567.811313	1133.60807	-1.1634	-0.00066059	0.034612	1.9653E-05	-1.1288	-0.00064094	567.8112231307458	69.291	1.6148	69.306	68.459	70.073	0.015121					143	41	5	0	0	0	0.086035	1	8347	8347		115.49	16.912	1	13770000	+		55562	21934	38760	38825	60923	60923					0.04661397160475644
NQFISHQR	8	Unmodified	_NQFISHQR_					0	0	0		ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7509765625	2	515.264865	1028.51518	-1.0218	-0.00052651	3.8633	0.0019906	2.8415	0.0014641	515.2668007441775	80.092	0.88221	80.114	79.561	80.443	0.021446					38	20	3	0	0	0	0.027866	1	9860	9860		40.573	0	1	411720			55563	9614	38761	38826	60924	60924					0.0020593721774275764
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2720336914062	2	533.271824	1064.5291	0.28317	0.00015101	-0.61847	-0.00032981	-0.33529	-0.0001788	533.2713903529077	55.478	1.5942	55.478	55.049	56.643	0					113	44	4	0	0	0	0.027092	5	6157	6121;6133;6145;6157;6171		143.89	64.069	1	24920000			55564	1607;4157	38762	38827	60925;60926;60927;60928;60929	60928					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.2716674804688	2	533.271824	1064.5291	-0.49301	-0.00026291	0.17079	9.1075E-05	-0.32222	-0.00017183	533.2717870218917	55.509	1.6205	55.352	54.994	56.614	-0.15601					111	44	4	0	0	0	0.016758	5	6121	6109;6121;6133;6146;6160		153.04	68.12	1	24638000			55565	1607;4157	38762	38827	60930;60931;60932;60933;60934	60931					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.271728515625	2	533.271824	1064.5291	-1.2843	-0.00068486	1.2026	0.00064133	-0.081621	-4.3526E-05	533.2722673986708	55.139	1.7765	55.237	54.733	56.51	0.098015					124	48	6	0	0	0	0.027092	3	6022	6010;6022;6034		143.89	58.527	1	25398000			55566	1607;4157	38762	38827	60935;60936;60937	60936					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.271824	1064.5291	-0.58603	-0.00031251	0.53926	0.00028757	-0.04677	-2.4941E-05	533.2719803082748	55.524	0.86728	55.293	54.855	55.723	-0.23087	-0.032398	5.0566E-05	NaN	153.04	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3479900			55567	1607;4157	38762	38827							-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.271824	1064.5291	-0.85204	-0.00045437	0.85961	0.0004584	0.0075662	4.0349E-06	533.2720906490621	55.5	1.0299	55.285	54.894	55.924	-0.21551	-0.041035	0.00039223	NaN	153.04	68	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3752900			55568	1607;4157	38762	38827							-0.0005883007379452465
NQFPKLFR	8	Unmodified	_NQFPKLFR_					0	0	0			REV__ENST00000587460.5_1_19:1358605-1376572:+|nuORF	REV__ENST00000587460.5_1_19:1358605-1376572:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2785034179688	2	525.298176	1048.5818	-0.86472	-0.00045423	-0.8552	-0.00044923	-1.7199	-0.00090347	525.2975666144215	84.669	0.90763	84.596	84.305	85.213	-0.072769					58	21	4	0	0	0	0.027866	1	10584	10584		42.474	5.3154	1	1317100	+		55569	35627	38763	38828	60938	60938					0.05945172779661334
NQFPKSPVQ	9	Unmodified	_NQFPKSPVQ_					0	0	0			REV__nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L	REV__nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2896118164062	2	522.777274	1043.53999	-0.4554	-0.00023807	-0.21111	-0.00011036	-0.66651	-0.00034844	522.7790546044895	56.512	0.71245	56.61	56.136	56.849	0.097897					36	19	3	0	0	0	0.022083	1	6268	6268		56.721	5.3856	1	328540	+		55570	25959	38764	38829	60939	60939					0.019965723004588654
NQFSKLNLA	9	Unmodified	_NQFSKLNLA_					0	0	0		nc|ENSG00000198739|Q86VH5-2|LRRTM3;ENSG00000198739|ENST00000361320|LRRTM3	nc|ENSG00000198739|Q86VH5-2|LRRTM3	nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.746337890625	2	517.785099	1033.55564	-0.60808	-0.00031486	2.1987	0.0011385	1.5907	0.00082362	517.7859752679367	48.172	0.37862	47.896	47.701	48.08	-0.27598					19	9	3	0	0	0	0.024511	1	4728	4728		25.574	3.6142	1	163440			55571	10184	38765	38830	60940	60940					0.04020858817534645
NQFVTQSQAY	10	Unmodified	_NQFVTQSQAY_					0	0	0			REV__ENSG00000170485|ENST00000335681|NPAS2	REV__ENSG00000170485|ENST00000335681|NPAS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.8013916015625	2	593.280377	1184.5462	-0.98401	-0.00058379	1.1032	0.00065449	0.11916	7.0698E-05	593.2806250370194	35.427	0.46626	35.24	34.985	35.452	-0.18675					23	11	3	0	0	0	0.03519	1	2704	2704		35.152	0	1	244830	+		55572	26477	38766	38831	60941	60941					-0.03868954258678059
NQGAEGKIL	9	Unmodified	_NQGAEGKIL_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2;REV__nc|ENSG00000187627|P0DJD0|RGPD1	REV__nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.25665283203125	2	465.256174	928.497795	0.72687	0.00033818	-0.8808	-0.0004098	-0.15393	-7.1617E-05	465.25576941565913	59.241	0.8159	59.241	58.895	59.711	0					80	21	5	0	0	0	0.39228	1	6745	6745		66.429	0.6261	1	14942000	+		55573	24890;27753	38767	38832	60942	60942					0.03068596892092046
NQGCLAPVRVV	11	Unmodified	_NQGCLAPVRVV_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.7722778320312	2	578.318783	1154.62301	-0.040658	-2.3513E-05	-0.61803	-0.00035742	-0.65869	-0.00038093	578.318499433831	85.854	0.7279	85.717	85.452	86.18	-0.13752					35	16	3	0	0	0	0.024727	1	10456	10456		18.262	0	1	170280			55574	8838	38768	38833	60943	60943					0.051885657567936505
NQGEFKELV	9	Unmodified	_NQGEFKELV_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2738037109375	2	532.274564	1062.53457	-0.84582	-0.00045021	0.061926	3.2962E-05	-0.78389	-0.00041725	532.2746105019471	49.896	0.82928	49.896	49.582	50.411	0					44	23	2	0	0	0	0.28753	1	5194	5194		77.318	19.088	1	3195900			55575	7050	38769	38834	60944	60944					0.0058084871798200766
NQGEFKELV	9	Unmodified	_NQGEFKELV_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.2747192382812	2	532.274564	1062.53457	-0.3526	-0.00018768	-0.34613	-0.00018424	-0.69873	-0.00037192	532.2744192677064	50.146	1.1216	49.995	49.634	50.755	-0.1512					52	32	2	0	0	0	0.51687	1	5201	5201		58.23	13.853	1	3063600			55576	7050	38769	38834	60945	60945					0.0058084871798200766
NQGEFKELV	9	Unmodified	_NQGEFKELV_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.274564	1062.53457	-0.73343	-0.00039039	0.071995	3.8321E-05	-0.66144	-0.00035207	532.2746241271788	49.785	0.78788	49.859	49.615	50.403	0.074196	-0.0576	0.00013708	NaN	77.318	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3005300			55577	7050	38769	38834							0.0058084871798200766
NQGEILRTE	9	Unmodified	_NQGEILRTE_					0	0	0		nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000596424.1_1_19:50360315-50362048:+|nuORF;nc|ENSG00000104960|Q86YD1-3|PTOV1	nc|ENSG00000104960|Q86YD1-2|PTOV1	nc|ENSG00000104960|Q86YD1-2|PTOV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3042602539062	2	530.275095	1058.53564	-1.2389	-0.00065697	3.0328	0.0016082	1.7939	0.00095124	530.2755089038506	31.434	0.73871	31.434	31.131	31.869	0					47	17	4	0	0	0	0.02435	1	2133	2133		34.173	5.0025	1	711600			55578	2624	38770	38835	60946	60946					0.008710630869245506
NQGKLPFAAA	10	Unmodified	_NQGKLPFAAA_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.30206298828125	2	508.779816	1015.54508	-0.71617	-0.00036437	-0.58341	-0.00029683	-1.2996	-0.0006612	508.7795958515468	56.22	0.32943	56.318	56.067	56.397	0.097893					12	8	2	0	0	0	0.03519	1	6145	6145		49.442	0	1	170110			55579	2760	38771	38836	60947	60947					0.0379287616306101
NQGLLHEL	8	Unmodified	_NQGLLHEL_					0	0	0		ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.7427978515625	2	462.250892	922.48723	0.75917	0.00035093	3.8173	0.0017646	4.5765	0.0021155	462.2523245481982	51.019	0.4579	50.838	50.685	51.143	-0.18071					26	11	3	0	0	0	0.027866	1	5233	5233		38.806	12.01	1	315490			55580	3601	38772	38837	60948	60948					0.022886142376592034
NQGLYWNN	8	Unmodified	_NQGLYWNN_					0	0	0			REV__nc|ENSG00000073008|P15151-3|PVR	REV__nc|ENSG00000073008|P15151-3|PVR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.76678466796875	2	504.730323	1007.44609	0.18795	9.4864E-05	-1.8759	-0.00094682	-1.6879	-0.00085195	504.72954608215184	63.665	0.14289	63.407	63.352	63.495	-0.25824					5	3	2	0	0	0	0.027866	1	7197	7197		31.955	11.958	1	79970	+		55581	20490	38773	38838	60949	60949					-0.05733146801821931
NQGQIEGTQ	9	Unmodified	_NQGQIEGTQ_					0	0	0			REV__ENSG00000215853|ENST00000316073|RPTN	REV__ENSG00000215853|ENST00000316073|RPTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7786865234375	2	487.73052	973.446488	-0.92583	-0.00045156	3.8486	0.0018771	2.9228	0.0014255	487.73232077198503	62.592	0.57036	62.592	62.409	62.98	0					27	13	3	0	0	0	0.02433	1	7296	7296		30.569	3.876	1	1043700	+		55582	28814	38774	38839	60950	60950					-0.04129771872612764
NQGQIEGTQ	9	Unmodified	_NQGQIEGTQ_					0	0	0			REV__ENSG00000215853|ENST00000316073|RPTN	REV__ENSG00000215853|ENST00000316073|RPTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7785339355469	2	487.73052	973.446488	-0.78609	-0.0003834	3.8839	0.0018943	3.0978	0.0015109	487.73217245656053	62.504	0.4086	62.566	62.401	62.81	0.062763					21	9	3	0	0	0	0.024367	1	7205	7205		36.447	8.5645	1	789300	+		55583	28814	38774	38839	60951	60951					-0.04129771872612764
NQGTQTQVH	9	Unmodified	_NQGTQTQVH_					0	0	0			REV__ENST00000496626.5_1_10:35437299-35441216:+|nuORF	REV__ENST00000496626.5_1_10:35437299-35441216:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8419494628906	2	506.743962	1011.47337	-0.62868	-0.00031858	3.6122	0.0018305	2.9835	0.0015119	506.7454297396964	65.812	0.6109	65.561	65.395	66.006	-0.25112					21	12	2	0	0	0	0.024457	1	7518	7518		37.159	0	1	183770	+		55584	20976	38775	38840	60952	60952					-0.03190663261420923
NQHDTFDIAW	10	Unmodified	_NQHDTFDIAW_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.T2201Dfs*2|1|0.07|ENSG00000066933|chr15:71850148-71850149|-/C|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A;ENST00000563648.1_1_15:72227626-72242653:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.56292724609375	3	416.18776	1245.54145	-0.22393	-9.3197E-05	3.0596	0.0012734	2.8357	0.0011802	416.1889502528107	28.282	0.41755	28.282	28.113	28.53	0					13	9	2	0	0	0	0.03519	1	1657	1657		25.126	3.3456	1	51794			55585	1349	38776	38841	60953	60953					-0.07149838401437592
NQHEDQKFFG	10	Unmodified	_NQHEDQKFFG_					0	0	0			REV__ENSG00000280204|ENST00000641544|OR1S1	REV__ENSG00000280204|ENST00000641544|OR1S1	MSMS	OPSCC_39_ClassI_Rep-2	2	416.9005126953125	3	417.191393	1248.55235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.506	1	16.358	15.858	16.858	-0.14753								0	0	0	0.77833	1	66	66		12.207	2.1028	1		+		55586	29235	38777	38842	60954	60954					-0.06198436027170828
NQHIGHFTNIP	11	Unmodified	_NQHIGHFTNIP_					0	0	0			REV__nc|ENSG00000068308|Q96G74-4|OTUD5	REV__nc|ENSG00000068308|Q96G74-4|OTUD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7755432128906	3	426.551033	1276.63127	0.17054	7.2745E-05	0.5941	0.00025341	0.76464	0.00032616	426.5510921483646	43.275	0.36049	43.162	42.927	43.288	-0.11253					15	9	2	0	0	0	0.024739	1	3919	3919		17.167	0	1	406060	+		55587	20373	38778	38843	60955	60955					0.004018359978090302
NQHLFPVAP	9	Unmodified	_NQHLFPVAP_					0	0	0		ENST00000308511.8_1_8:22477609-22477870:+|nuORF	ENST00000308511.8_1_8:22477609-22477870:+|nuORF	ENST00000308511.8_1_8:22477609-22477870:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7898254394531	2	511.774534	1021.53451	-0.48259	-0.00024698	-2.9014	-0.0014848	-3.384	-0.0017318	511.77238735424083	82.551	0.88563	82.551	81.95	82.835	0					26	15	2	0	0	0	0.024466	1	10238	10238		18.324	0	1	377960			55588	12031	38779	38844	60956	60956					0.024608935086462225
NQHLRREGY	9	Unmodified	_NQHLRREGY_					0	0	0		nc|ENSG00000143590|P52797-2|EFNA3;ENSG00000143590|ENST00000368408|EFNA3	nc|ENSG00000143590|P52797-2|EFNA3	nc|ENSG00000143590|P52797-2|EFNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	585.8115234375	2	586.799603	1171.58465	-1.9956	-0.001171	-4.4912	-0.0026354	-6.4868	-0.0038064	586.7968563189537	28.002	0.71705	28.002	27.689	28.406	0					33	17	3	0	0	0	0.024263	1	1549	1549		42.396	0	1	258460			55589	5669	38780	38845	60957	60957					0.0057239616651258984
NQHNAASFPA	10	Unmodified	_NQHNAASFPA_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5;nc|ENSG00000204406|Q9P267-2|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.74853515625	2	528.746505	1055.47846	0.22244	0.00011761	3.2152	0.0017	3.4376	0.0018176	528.7479914888474	85.049	3.2624	84.846	83.951	87.213	-0.20329					161	76	5	0	0	0	1.0508	1	10324	10324		39.253	0.23134	1	1961800			55590	10343	38781	38846	60958	60958					-0.04706359398801396
NQHNAASFPA	10	Unmodified	_NQHNAASFPA_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5;nc|ENSG00000204406|Q9P267-2|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7477416992188	2	528.746505	1055.47846	0.51812	0.00027396	2.9358	0.0015523	3.4539	0.0018262	528.7478249114087	84.976	3.36	84.838	83.845	87.205	-0.13752					151	78	4	0	0	0	0.98754	1	10336	10336		47.657	1.7054	1	1831100			55591	10343	38781	38846	60959	60959					-0.04706359398801396
NQHVHEQHSK	10	Unmodified	_NQHVHEQHSK_					0	0	0			REV__nc|ENSG00000140836|Q15911-2|ZFHX3	REV__nc|ENSG00000140836|Q15911-2|ZFHX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.5675048828125	3	415.202404	1242.58538	-0.50747	-0.0002107	-0.33303	-0.00013827	-0.8405	-0.00034898	415.20262178559284	28.957	0.29984	28.788	28.685	28.985	-0.16897					14	6	3	0	0	0	0.03519	1	1738	1738		21.78	0	1	43660	+		55592	24044	38782	38847	60960	60960					-0.026208091844409864
NQHVKSAL	8	Unmodified	_NQHVKSAL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.7509460449219	2	448.751059	895.487565	0.3327	0.0001493	-0.72776	-0.00032658	-0.39506	-0.00017728	448.7507107040332	20.88	1.2062	20.712	20.395	21.601	-0.1678					68	24	6	0	0	0	0.30053	3	598	588;598;611		111.65	37.674	1	2171400			55593	2693	38783	38848	60961;60962;60963	60962					0.03564033957513857
NQHVKSAL	8	Unmodified	_NQHVKSAL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.7509460449219	2	448.751059	895.487565	0.4739	0.00021266	-0.85662	-0.00038441	-0.38272	-0.00017175	448.7506535328653	20.95	1.1254	20.754	20.385	21.511	-0.19577					60	22	4	0	0	0	0.25873	3	603	593;603;617		129.68	50.232	1	2121200			55594	2693	38783	38848	60964;60965;60966	60965					0.03564033957513857
NQHVKSAL	8	Unmodified	_NQHVKSAL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.7508544921875	2	448.751059	895.487565	-0.83925	-0.00037662	0.97971	0.00043965	0.14046	6.3031E-05	448.75135640251426	20.965	0.6428	20.752	20.525	21.167	-0.2128					29	12	4	0	0	0	0.44952	1	587	587		90.37	19.074	1	317940			55595	2693	38783	38848	60967	60967					0.03564033957513857
NQHYGFGLLI	10	Unmodified	_NQHYGFGLLI_					0	0	0			REV__ENST00000296215.7_2_1:38002851-38002995:-|nuORF	REV__ENST00000296215.7_2_1:38002851-38002995:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	581.3289184570312	2	581.306198	1160.59784	-0.3715	-0.00021595	0.21334	0.00012402	-0.15815	-9.1935E-05	581.3051541626673	70.89	0.23912	70.89	70.787	71.026	0					6	5	2	0	0	0	0.03519	1	8576	8576		30.504	0	1	88273	+		55596	29989	38784	38849	60968	60968					0.023968342259195197
NQIKCDSFF	9	Unmodified	_NQIKCDSFF_					0	0	0			REV__ENST00000519455.5_1_5:179047887-179050134:-|nuORF	REV__ENST00000519455.5_1_5:179047887-179050134:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.8174438476562	2	551.255317	1100.49608	-0.23125	-0.00012748	1.8016	0.00099316	1.5704	0.00086568	551.2563401330493	52.482	0.32313	52.292	52.106	52.43	-0.18981					16	7	3	0	0	0	0.024506	1	5442	5442		23.042	3.6825	1	86553	+		55597	22913	38785	38850	60969	60969					-0.050147801881848864
NQILCLTNKA	10	Unmodified	_NQILCLTNKA_					0	0	0			REV__nc|ENSG00000103351|Q96AJ1-2|CLUAP1	REV__nc|ENSG00000103351|Q96AJ1-2|CLUAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.303955078125	2	559.305341	1116.59613	-0.1251	-6.9968E-05	-3.5141	-0.0019654	-3.6392	-0.0020354	559.3032691581078	46.341	1.0678	46.392	46.031	47.099	0.051395					75	29	4	0	0	0	0.91678	1	4513	4513		52.937	1.6012	1	6632200	+		55598	21379	38786	38851	60970	60970					0.04249457145624547
NQILRAIRGEL	11	Unmodified	_NQILRAIRGEL_					0	0	0			REV__ENSG00000153790|ENST00000283905|C7orf31	REV__ENSG00000153790|ENST00000283905|C7orf31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8817749023438	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0344	1	11728	11728		29.17	2.4771	1	3453200	+		55599	24910	38787	38852	60971	60971					0.12211243991396259
NQINLEPVF	9	Unmodified	_NQINLEPVF_					0	0	0			REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.3046875	2	537.284931	1072.55531	-1.2284	-0.00065999	0.70834	0.00038058	-0.52003	-0.00027941	537.2853622754947	68.827	0.202	68.565	68.424	68.626	-0.26166					6	4	2	0	0	0	0.024405	1	7971	7971		35.618	7.736	1	125380	+		55600	36723	38788	38853	60972	60972					0.021934390976412033
NQINTAPKP	9	Unmodified	_NQINTAPKP_					0	0	0		nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.8034973144531	2	491.769448	981.524344	-0.83986	-0.00041302	1.3549	0.00066632	0.51509	0.0002533	491.76983023840796	36.073	0.8748	36.073	35.531	36.406	0					45	23	3	0	0	0	0.02435	1	2749	2749		34.173	0	1	424220			55601	9471	38789	38854	60973	60973					0.03284285783411178
NQINTAPKP	9	Unmodified	_NQINTAPKP_					0	0	0		nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	491.769448	981.524344	-1.1276	-0.00055452	1.8201	0.00089506	0.69248	0.00034054	491.76986769102064	35.917	0.68015	35.875	35.528	36.208	-0.042458	-0.12075	0.00030226	NaN	34.173	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389040			55602	9471	38789	38854							0.03284285783411178
NQINTPNQP	9	Unmodified	_NQINTPNQP_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8145751953125	2	513.254163	1024.49377	0.95455	0.00048993	2.7477	0.0014103	3.7023	0.0019002	513.2553954755629	59.753	0.69862	59.753	59.444	60.143	0					48	18	4	0	0	0	0.0242	1	6879	6879		51.193	3.5354	1	779450	+		55603	23135	38790	38855	60974	60974					-0.01749492601629754
NQIQHYFCDA	10	Unmodified	_NQIQHYFCDA_					0	0	0		ENSG00000254737|ENST00000641722|OR10G4;ENSG00000182634|ENST00000641585|OR10G7	ENSG00000254737|ENST00000641722|OR10G4;ENSG00000182634|ENST00000641585|OR10G7	ENSG00000182634|ENST00000641585|OR10G7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.2403869628906	3	413.513479	1237.51861	-0.37069	-0.00015328	0.93538	0.00038679	0.5647	0.00023351	413.51392566142664	33.758	0.4623	33.558	33.404	33.866	-0.20019					20	11	2	0	0	0	0.03519	1	2473	2473		16.007	7.5995	1	133380			55604	10884;9150	38791	38856	60975	60975					-0.09065180790548766
NQIQLNQLN	9	Unmodified	_NQIQLNQLN_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2654418945312	2	542.790912	1083.56727	-0.8147	-0.00044221	-3.1062	-0.001686	-3.9209	-0.0021282	542.7889784182977	52.955	1.1395	53.051	52.489	53.629	0.095669					54	30	2	0	0	0	0.024506	1	5724	5724		16.473	0	1	228940	+		55605	26716	38792	38857	60976	60976					0.028830558408344586
NQIRFVTLP	9	Unmodified	_NQIRFVTLP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2924194335938	2	544.316566	1086.61858	-0.41199	-0.00022426	0.6236	0.00033943	0.2116	0.00011518	544.3161250825685	46.002	1.0072	45.741	45.416	46.423	-0.26118					52	26	3	0	0	0	0.024457	1	4476	4476		21.96	1.013	1	349080			55606	6595	38793	38858	60977	60977					0.07873424605554646
NQIRFVTLP	9	Unmodified	_NQIRFVTLP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.316566	1086.61858	-0.29444	-0.00016027	2.0172	0.001098	1.7227	0.0009377	544.3174839207549	45.67	0.52757	45.573	45.359	45.887	-0.096649	-0.075488	0.00023155	NaN	21.96	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462330			55607	6595	38793	38858							0.07873424605554646
NQIRFVTLP	9	Unmodified	_NQIRFVTLP_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.316566	1086.61858	-1.3746	-0.00074824	2.6469	0.0014407	1.2722	0.0006925	544.318153255862	45.835	0.64731	45.633	45.358	46.005	-0.20226	-0.016344	0.00091709	NaN	21.96	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327130			55608	6595	38793	38858							0.07873424605554646
NQIRLVGR	8	Unmodified	_NQIRLVGR_					0	0	0			REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2781677246094	2	478.293425	954.572297	0.15802	7.5579E-05	2.9116	0.0013926	3.0696	0.0014682	478.2946318773066	80.888	0.4711	80.888	80.667	81.138	0					22	11	3	0	0	0	0.027866	1	10031	10031		21.96	9.753	1	185250	+		55609	33444	38794	38859	60978	60978					0.09319404494135597
NQIVNIEEP	9	Unmodified	_NQIVNIEEP_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.8180541992188	2	528.272021	1054.52949	0.13739	7.258E-05	3.1751	0.0016773	3.3125	0.0017499	528.2735900097696	83.237	0.42659	83.068	82.819	83.246	-0.16915					16	9	2	0	0	0	0.024427	1	10033	10033		19.997	0	1	116590	+		55610	22623	38795	38860	60979	60979					0.004405448553598035
NQIYRGGEN	9	Unmodified	_NQIYRGGEN_					0	0	0			REV__ENST00000543515.6_1_12:13133086-13133362:+|nuORF	REV__ENST00000543515.6_1_12:13133086-13133362:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7670288085938	2	525.751787	1049.48902	-0.51127	-0.0002688	1.2784	0.00067215	0.76718	0.00040335	525.7519020253485	31.092	0.27821	30.907	30.784	31.062	-0.18503					16	6	3	0	0	0	0.024523	1	2029	2029		29.15	0	1	94969	+		55611	34804	38796	38861	60980	60980					-0.03374376744363872
NQKALLVEP	9	Unmodified	_NQKALLVEP_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8267517089844	2	506.295299	1010.57605	0.059127	2.9936E-05	0.28088	0.00014221	0.34	0.00017214	506.29532852520236	68.247	0.62363	67.955	67.548	68.171	-0.29267					27	15	3	0	0	0	0.024374	1	8084	8084		40.778	10.46	1	228100	+		55612	27537	38797	38862	60981	60981					0.0711802947733986
NQKALLVEP	9	Unmodified	_NQKALLVEP_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.295299	1010.57605	0.073704	3.7316E-05	0.15116	7.6531E-05	0.22486	0.00011385	506.2951908929999	67.812	0.34477	67.812	67.719	68.064	0	-0.089785	0.00015876	NaN	40.778	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229370	+		55613	27537	38797	38862							0.0711802947733986
NQKCPLQEM	9	Unmodified	_NQKCPLQEM_					0	0	0		ENSG00000111364|ENST00000238146|DDX55;ENST00000542286.5_1_12:124093257-124104017:+|nuORF	ENSG00000111364|ENST00000238146|DDX55	ENSG00000111364|ENST00000238146|DDX55	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.31396484375	2	545.754627	1089.4947	-1.6321	-0.00089073	1.0743	0.00058628	-0.55785	-0.00030445	545.7551179695987	44.095	0.44204	44.095	43.872	44.314	0					22	12	2	0	0	0	0.024263	1	4211	4211		34.173	0	1	259950			55614	3113	38798	38863	60982	60982					-0.046467375485690354
NQKELAKQL	9	Unmodified	_NQKELAKQL_					0	0	0			REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3116455078125	2	536.31148	1070.60841	0.57142	0.00030646	-0.43194	-0.00023165	0.13948	7.4807E-05	536.311298216663	97.061	1.2149	96.925	96.524	97.738	-0.13671					64	26	4	0	0	0	0.89441	1	11993	11993		32.812	1.2826	1	625010	+		55615	26118	38799	38864	60983	60983					0.07592816880332975
NQKELRAV	8	Unmodified	_NQKELRAV_					0	0	0			REV__ENSG00000162373|ENST00000371833|BEND5	REV__ENSG00000162373|ENST00000371833|BEND5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2776794433594	2	479.277441	956.540328	0.1691	8.1046E-05	-0.42382	-0.00020313	-0.25472	-0.00012208	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	0.96769	1	9803	9803		42.396	1.618	1	1990900	+		55616	25430	38800	38865	60984	60984					0.060319920203255606
NQKFKEDW	8	Unmodified	_NQKFKEDW_					0	0	0			REV__nc|ENSG00000186812|Q8NF99-2|ZNF397	REV__nc|ENSG00000186812|Q8NF99-2|ZNF397	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3110961914062	2	547.766906	1093.51926	-0.37381	-0.00020476	0.34652	0.00018981	-0.027296	-1.4952E-05	548.2703088286088	64.05	0.36567	63.822	63.7	64.066	-0.22773					11	8	2	0	0	0	0.027866	1	7252	7252		30.504	1.3541	1	106680	+		55617	37030	38801	38866	60985	60985					-0.023760180791896346
NQKFLHIDP	9	Unmodified	_NQKFLHIDP_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7695922851562	2	556.298373	1110.58219	-0.95009	-0.00052854	0.48254	0.00026844	-0.46755	-0.0002601	556.298403687107	37.837	0.4487	37.616	37.349	37.798	-0.22058					24	11	3	0	0	0	0.024447	1	3094	3094		25.574	0	1	622330	+		55618	26328	38802	38867	60986	60986					0.03132547708855782
NQKGSLKKA	9	Unmodified	_NQKGSLKKA_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.29327392578125	2	487.293091	972.571629	-0.66256	-0.00032286	-0.075922	-3.6996E-05	-0.73848	-0.00035986	487.2929083828136	89.879	1.2819	89.879	89.605	90.887	0					77	30	4	0	0	0	0.89441	1	11355	11355		32.812	4.9302	1	3154500			55619	6240	38803	38868	60987	60987					0.0842456505440623
NQKHRLLKN	9	Unmodified	_NQKHRLLKN_					0	0	0		ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8429565429688	2	575.843813	1149.67307	-2.0743	-0.0011945	0.6137	0.00035339	-1.4606	-0.00084106	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	0.98128	1	11494	11494		24.203	0.68005	1	5238400			55620	12521	38804	38869	60988	60988					0.10422436476983421
NQKHRLLKN	9	Unmodified	_NQKHRLLKN_					0	0	0		ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8434448242188	2	575.843813	1149.67307	-0.10957	-6.3095E-05	-1.3506	-0.00077775	-1.4602	-0.00084085	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	0.92825	1	11394	11394		30.504	3.4563	1	4935500			55621	12521	38804	38869	60989	60989					0.10422436476983421
NQKHRLLKN	9	Unmodified	_NQKHRLLKN_					0	0	0		ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8441162109375	2	575.843813	1149.67307	-0.05705	-3.2852E-05	-1.4529	-0.00083662	-1.5099	-0.00086947	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.83071	1	10911	10911		37.159	3.6435	1	1877500			55622	12521	38804	38869	60990	60990					0.10422436476983421
NQKIRFKEP	9	Unmodified	_NQKIRFKEP_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	581.3307495117188	2	580.332747	1158.65094	-0.32494	-0.00018857	3.5425	0.0020558	3.2176	0.0018673	580.83735356173	70.733	0.46936	70.733	70.44	70.909	0					17	10	2	0	0	0	0.024397	1	8555	8555		39.253	8.7492	1	192180			55623	7371	38805	38870	60991	60991					0.07796212008565817
NQKIVKNN	8	Unmodified	_NQKIVKNN_					0	0	0		nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;ENST00000476559.2_1_X:38128881-38132749:-|nuORF	nc|ENSG00000156313|Q92834-2|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	MSMS	OPSCC_39_ClassI_Rep-2	2	479.27764892578125	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.202	1	86.157	85.657	86.657	-0.045105								0	0	0	0.57512	1	10792	10792		50.025	5.9077	1				55624	18404	38806	38871	60992	60992					0.06031992020314192
NQKKIDSP	8	Unmodified	_NQKKIDSP_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7845153808594	2	465.256174	928.497795	0.46141	0.00021468	-0.36619	-0.00017037	0.095222	4.4303E-05	465.25575110847706	44.774	0.92597	44.811	44.476	45.402	0.0369					74	26	4	0	0	0	0.027866	1	4182	4182		31.955	0	1	3315500	+		55625	20141	38807	38872	60993	60993					0.03068596892092046
NQKKKEQV	8	Unmodified	_NQKKKEQV_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2907409667969	2	501.290548	1000.56654	0.40529	0.00020317	-0.52388	-0.00026262	-0.11859	-5.945E-05	501.2901072345097	88.222	1.3061	88.222	87.922	89.228	0					72	30	5	0	0	0	1.0516	1	11111	11111		29.15	1.2673	1	995670	+		55626	23031	38808	38873	60994	60994					0.06628261191804086
NQKKVSALN	9	Unmodified	_NQKKVSALN_					0	0	0			REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2908935546875	2	501.290548	1000.56654	0.79479	0.00039842	-1.5169	-0.00076043	-0.72216	-0.00036201	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.84115	1	10761	10761		36.447	6.129	1	8460100	+		55627	34904	38809	38874	60995	60995					0.06628261191804086
NQKKVSALN	9	Unmodified	_NQKKVSALN_					0	0	0			REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	REV__ENST00000550444.1_3_12:104458664-104458877:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2905578613281	2	501.290548	1000.56654	0.66235	0.00033203	-0.83167	-0.00041691	-0.16932	-8.4879E-05	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	0.94779	1	10034	10034		29.17	0.020503	1	3151900	+		55628	34904	38809	38874	60996	60996					0.06628261191804086
NQKLENMLN	9	Unmodified	_NQKLENMLN_					0	0	0			REV__RNF217-TPD52L1|3|fusion	REV__RNF217-TPD52L1|3|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2920532226562	2	552.279323	1102.54409	0.040698	2.2477E-05	-0.88298	-0.00048765	-0.84228	-0.00046517	552.2786452367291	40.286	0.56272	40.286	40.024	40.587	0					25	15	2	0	0	0	0.024447	1	3581	3581		40.778	0	1	149770	+		55629	37446	38810	38875	60997	60997					-0.0030770626810863178
NQKLSNKTI	9	Unmodified	_NQKLSNKTI_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN;nc|ENSG00000166454|O43313-2|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.74711	1	10476	10476		42.864	0.46813	1	3714800			55630	7566	38811	38876	60998	60998					0.07224530363282611
NQKLTKKT	8	Unmodified	_NQKLTKKT_					0	0	0		KIF11|p.A373T|1|0.16|ENSG00000138160|chr10:92616821-92616821|G/A|missense_variant	KIF11|p.A373T|1|0.16|ENSG00000138160|chr10:92616821-92616821|G/A|missense_variant	KIF11|p.A373T|1|0.16|ENSG00000138160|chr10:92616821-92616821|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2887878417969	2	480.795466	959.57638	0.015423	7.4155E-06	0.069896	3.3606E-05	0.085319	4.1021E-05	480.7955253023602	66.23	0.38493	65.948	65.788	66.173	-0.28149					16	9	3	0	0	0	0.027866	1	7837	7837		14.865	0	1	291560			55631	17795	38812	38877	60999	60999					0.09497449197192509
NQKNLLKKP	9	Unmodified	_NQKNLLKKP_					0	0	0		ENSG00000125351|ENST00000276201|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.792236328125	2	541.837665	1081.66078	-1.7166	-0.00093011	0.84284	0.00045668	-0.87374	-0.00047343	541.8379679275729	44.668	0.54213	44.519	44.288	44.83	-0.1488					32	15	3	0	0	0	0.024523	1	4240	4240		15.642	4.7763	1	381380			55632	4097	38813	38878	61000	61000					0.12321400013956918
NQKPKYAE	8	Unmodified	_NQKPKYAE_					0	0	0		NIPBL|p.E1081Q|1|0.04|ENSG00000164190|chr5:36995741-36995741|G/C|missense_variant	NIPBL|p.E1081Q|1|0.04|ENSG00000164190|chr5:36995741-36995741|G/C|missense_variant	NIPBL|p.E1081Q|1|0.04|ENSG00000164190|chr5:36995741-36995741|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2709045410156	2	489.256174	976.497795	-0.54624	-0.00026725	3.3969	0.0016619	2.8506	0.0013947	489.2577603475574	38.937	2.1269	38.714	37.648	39.775	-0.22311					79	57	2	0	0	0	0.027866	1	3288	3288		38.806	13.356	1	319450			55633	18874	38814	38879	61001	61001					0.008605968920846863
NQKPRGTL	8	Unmodified	_NQKPRGTL_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11;OSBPL11|p.V663Efs*6|1|0.04|ENSG00000144909|chr3:125538474-125538487|CTCCAGAGGTCTCA/-|frameshift_variant	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2645263671875	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.96769	1	10081	10081		42.396	1.618	1	2920900			55634	5783	38815	38880	61002	61002					0.05435722848869773
NQKQQFIHSL	10	Unmodified	_NQKQQFIHSL_					0	0	0			REV__ENST00000486107.5_1_3:49947550-49967319:-|nuORF	REV__ENST00000486107.5_1_3:49947550-49967319:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.240234375	3	414.891166	1241.65167	-0.39889	-0.00016549	1.83	0.00075925	1.4311	0.00059375	415.22552424833407	33.976	0.20147	33.769	33.587	33.789	-0.20696					6	4	2	0	0	0	0.03519	1	2461	2461		7.3997	0	1	39784	+		55635	33578	38816	38881	61003	61003					0.040510066576189274
NQKQQLLAD	9	Unmodified	_NQKQQLLAD_					0	0	0			REV__ENSG00000090857|ENST00000288050|PDPR	REV__ENSG00000090857|ENST00000288050|PDPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2871704101562	2	529.285463	1056.55637	0.38914	0.00020597	2.8841	0.0015265	3.2732	0.0017325	529.286894664619	85.499	1.0534	85.35	84.867	85.92	-0.14967					56	24	4	0	0	0	0.27161	1	10355	10355		79.451	13.986	1	2491000	+		55636	20885	38817	38882	61004	61004					0.030356534665770596
NQKRIPAS	8	Unmodified	_NQKRIPAS_					0	0	0		ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2642822265625	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.94517	1	10181	10181		45.952	3.4775	1	3048400			55637	13615	38818	38883	61005	61005					0.05435722848858404
NQKRIPAS	8	Unmodified	_NQKRIPAS_					0	0	0		ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.264404296875	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	1.0009	1	10031	10031		37.159	0.13063	1	2903100			55638	13615	38818	38883	61006	61006					0.05435722848858404
NQKRIPAS	8	Unmodified	_NQKRIPAS_					0	0	0		ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26397705078125	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.94517	2	10188	10188;10201		45.952	6.6991	1	2920900			55639	13615	38818	38883	61007;61008	61007					0.05435722848858404
NQKRIPAS	8	Unmodified	_NQKRIPAS_					0	0	0		ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2640686035156	2	457.264333	912.514114	0.383	0.00017513	-0.35618	-0.00016287	0.026819	1.2263E-05	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	0.845	2	9931	9817;9931		55.504	1.8352	1	4505400			55640	13615	38818	38883	61009;61010	61010					0.05435722848858404
NQKRIPAS	8	Unmodified	_NQKRIPAS_					0	0	0		ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2642517089844	2	457.264333	912.514114	0.64915	0.00029683	-0.50586	-0.00023131	0.14329	6.5523E-05	457.26408262448706	84.2	1.7699	83.997	83.608	85.378	-0.20329					87	41	3	0	0	0	1.0009	1	10173	10173		37.159	8.0096	1	724170			55641	13615	38818	38883	61011	61011					0.05435722848858404
NQKRIPAS	8	Unmodified	_NQKRIPAS_					0	0	0		ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2638244628906	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	0.845	3	9952	9801;9952;9964		55.504	11.387	1	4140300			55642	13615	38818	38883	61012;61013;61014	61013					0.05435722848858404
NQKRIPAS	8	Unmodified	_NQKRIPAS_					0	0	0		ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	ENST00000398117.1_1_18:60986791-60986938:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.26409912109375	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0009	2	9823	9823;9860		37.159	6.6555	1	3503800			55643	13615	38818	38883	61015;61016	61015					0.05435722848858404
NQKRITTP	8	Unmodified	_NQKRITTP_					0	0	0		ENSG00000100142|ENST00000442738|POLR2F	ENSG00000100142|ENST00000442738|POLR2F	ENSG00000100142|ENST00000442738|POLR2F	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2779541015625	2	479.277441	956.540328	0.83865	0.00040194	-0.029468	-1.4123E-05	0.80918	0.00038782	479.2772019259283	96.265	2.3127	96.128	95.156	97.468	-0.1367					130	52	5	0	0	0	1.0106	1	11927	11927		35.618	0	1	1775700			55644	2141	38819	38884	61017	61017					0.06031992020314192
NQKSDPDLA	9	Unmodified	_NQKSDPDLA_					0	0	0			REV__nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11	REV__nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3008728027344	2	494.240721	986.466889	0.63517	0.00031393	-3.9895	-0.0019718	-3.3543	-0.0016578	494.238385744921	96.241	0.12463	96.247	96.186	96.311	0.0065079					4	2	2	0	0	0	0.024344	1	12243	12243		64.207	23.429	1	42102	+		55645	29047	38820	38885	61018	61018					-0.026886012128215953
NQKSRIQS	8	Unmodified	_NQKSRIQS_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.28729248046875	2	480.764697	959.514842	0.60503	0.00029087	3.6101	0.0017356	4.2151	0.0020265	480.7655673289357	50.047	0.34302	49.941	49.745	50.088	-0.10558					11	8	2	0	0	0	0.027866	1	5036	5036		30.504	0	1	141950	+		55646	20064	38821	38886	61019	61019					0.03346517497914192
NQKWLEIL	8	Unmodified	_NQKWLEIL_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.818359375	2	522.297842	1042.58113	0.52946	0.00027653	-2.3679	-0.0012367	-1.8384	-0.0009602	522.2993138367514	54.412	0.54604	54.51	54.15	54.696	0.098015					34	15	3	0	0	0	0.027866	1	5827	5827		37.159	0	1	237480			55647	10574	38822	38887	61020	61020					0.061543333399413314
NQLALILID	9	Unmodified	_NQLALILID_					0	0	0		ERBB2|p.T182I|1|0.27|ENSG00000141736|chr17:39709423-39709423|C/T|missense_variant	ERBB2|p.T182I|1|0.27|ENSG00000141736|chr17:39709423-39709423|C/T|missense_variant	ERBB2|p.T182I|1|0.27|ENSG00000141736|chr17:39709423-39709423|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2723083496094	2	506.8055	1011.59645	-0.97733	-0.00049532	0.31098	0.0001576	-0.66636	-0.00033771	506.80553276865277	35.548	1.05	35.548	34.944	35.994	0					60	27	3	0	0	0	0.024412	1	2798	2798		24.203	7.7296	1	1065600			55648	17618	38823	38888	61021	61021					0.0911120013714708
NQLCEIPK	8	Unmodified	_NQLCEIPK_					0	0	0		LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant;ENSG00000066557|ENST00000370952|LRRC40	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2996520996094	2	472.747127	943.479702	-0.76961	-0.00036383	-2.0079	-0.00094922	-2.7775	-0.001313	472.7456266336369	38.273	0.35675	38.054	37.861	38.218	-0.21848					17	10	2	0	0	0	0.027866	1	3139	3139		66.429	25.651	1	148290			55649	1341	38824	38889	61022	61022					0.005701386457417357
NQLEQQSNI	9	Unmodified	_NQLEQQSNI_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2940063476562	2	537.264727	1072.5149	-0.28194	-0.00015148	4.0684	0.0021858	3.7864	0.0020343	537.2667757872988	63.301	1.0776	63.301	63.09	64.168	0					73	29	5	0	0	0	0.024367	1	7387	7387		29.17	2.1227	1	2301500	+		55650	24188	38825	38890	61023	61023					-0.018455272927667465
NQLGVCEVQ	9	Unmodified	_NQLGVCEVQ_					0	0	0			REV__ENST00000393310.5_1_2:109204951-109205068:+|nuORF	REV__ENST00000393310.5_1_2:109204951-109205068:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.78118896484375	2	495.239667	988.46478	-0.33734	-0.00016706	2.0038	0.00099237	1.6665	0.00082531	495.238964686342	28.065	0.25732	28.146	27.95	28.208	0.080811					6	5	2	0	0	0	0.024344	1	1535	1535		54.776	8.8244	1	26428	+		55651	31639	38826	38891	61024	61024					-0.029913532222622052
NQLHDSLPK	9	Unmodified	_NQLHDSLPK_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.257080078125	2	526.28018	1050.54581	-0.61531	-0.00032383	1.0475	0.0005513	0.43223	0.00022747	526.2805033199317	39.485	0.53009	39.32	39.008	39.538	-0.16458					26	13	3	0	0	0	0.024539	1	3368	3368		14.865	6.1712	1	217380	+		55652	25109	38827	38892	61025	61025					0.022556708121328484
NQLHFYSL	8	Unmodified	_NQLHFYSL_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|5|1|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|5|1|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|5|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.8341369628906	2	511.258717	1020.50288	0.19693	0.00010068	0.10377	5.3055E-05	0.3007	0.00015374	511.2578534507898	72.635	0.24776	72.644	72.529	72.777	0.0097733					9	5	2	0	0	0	0.027866	1	8775	8775		31.955	0	1	145650			55653	17861	38828	38893	61026	61026					-0.006550992453071558
NQLITNHIV	9	Unmodified	_NQLITNHIV_					0	0	0		ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2977294921875	2	526.298373	1050.58219	-0.40732	-0.00021437	0.061287	3.2255E-05	-0.34603	-0.00018212	526.2983503107251	55.167	1.0364	55.017	54.711	55.747	-0.15036					77	28	4	0	0	0	0.23085	1	6050	6050		84.916	9.8722	1	9588200			55654	14482	38829	38894	61027	61027					0.05892547708845086
NQLKKELSV	9	Unmodified	_NQLKKELSV_					0	0	0			REV__ENSG00000102468|ENST00000542664|HTR2A	REV__ENSG00000102468|ENST00000542664|HTR2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.8106689453125	2	529.813856	1057.61316	-0.070819	-3.7521E-05	1.9723	0.001045	1.9015	0.0010075	529.8148286460275	68.745	0.65095	68.503	68.348	68.999	-0.24277					25	15	2	0	0	0	0.024427	1	7951	7951		34.173	12.213	1	219310	+		55655	21311	38830	38895	61028	61028					0.0866570102307378
NQLLEMVYL	9	Unmodified	_NQLLEMVYL_					0	0	0			REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2798461914062	2	561.796817	1121.57908	0.6642	0.00037315	-1.0484	-0.00058897	-0.38416	-0.00021582	561.7959811226604	85.655	0.58394	85.655	85.414	85.998	0					20	13	2	0	0	0	0.024457	1	10727	10727		45.952	0	1	150610	+		55656	20077	38831	38896	61029	61029					0.023155365398224603
NQLLFKVI	8	Unmodified	_NQLLFKVI_					0	0	0			REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7920227050781	2	487.805303	973.596052	-0.70516	-0.00034398	1.0375	0.0005061	0.33235	0.00016212	487.80577999065446	78.319	0.20161	78.335	78.155	78.356	0.015907					7	4	2	0	0	0	0.027866	1	9595	9595		42.474	0	1	180500	+		55657	28215	38832	38897	61030	61030					0.10819825207954636
NQLLGEVKDLL	11	Unmodified	_NQLLGEVKDLL_					0	0	0		ENSG00000113296|ENST00000350881|THBS4	ENSG00000113296|ENST00000350881|THBS4	ENSG00000113296|ENST00000350881|THBS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.240234375	3	414.574844	1240.7027	-0.45341	-0.00018797	-0.4741	-0.00019655	-0.92751	-0.00038452	414.57473839445214	33.853	0.39131	33.653	33.404	33.795	-0.20019					14	9	2	0	0	0	0.024792	1	2461	2461		18.531	2.5243	1	65981			55658	3278	38833	38898	61031	61031					0.09197910911802865
NQLLRDAAL	9	Unmodified	_NQLLRDAAL_					0	0	0		nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENSG00000144596|ENST00000621039|GRIP2	nc|ENSG00000144596|Q9C0E4-2|GRIP2	nc|ENSG00000144596|Q9C0E4-2|GRIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3065490722656	2	507.290548	1012.56654	-1.0048	-0.00050973	-4.1407	-0.0021005	-5.1455	-0.0026103	507.28646753313035	43.87	0.87459	43.625	43.24	44.115	-0.2444					37	23	3	0	0	0	0.023417	1	4075	4075		58.782	0	1	458320			55659	5752	38834	38899	61032	61032					0.060762611917994036
NQLLRDAAL	9	Unmodified	_NQLLRDAAL_					0	0	0		nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENSG00000144596|ENST00000621039|GRIP2	nc|ENSG00000144596|Q9C0E4-2|GRIP2	nc|ENSG00000144596|Q9C0E4-2|GRIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3072509765625	2	507.290548	1012.56654	-1.0757	-0.00054571	2.8318	0.0014365	1.7561	0.00089083	507.29145048349807	43.654	0.72488	43.435	43.211	43.936	-0.21939					43	19	5	0	0	0	0.022756	1	4062	4062		49.442	0	1	1143100			55660	5752	38834	38899	61033	61033					0.060762611917994036
NQLNQKVLN	9	Unmodified	_NQLNQKVLN_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2843017578125	2	535.80128	1069.58801	-1.3019	-0.00069757	0.34961	0.00018732	-0.95231	-0.00051025	535.8014382484816	38.16	0.97612	38.077	37.777	38.753	-0.082516					44	26	2	0	0	0	0.024457	1	3113	3113		29.15	3.6994	1	840730	+		55661	23505	38835	38900	61034	61034					0.05599646220525756
NQLQGETHVL	10	Unmodified	_NQLQGETHVL_					0	0	0			REV__ENSG00000081870|ENST00000194214|IFT25	REV__ENSG00000081870|ENST00000194214|IFT25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2490844726562	2	569.796195	1137.57784	0.0070842	4.0365E-06	0.60578	0.00034517	0.61286	0.00034921	570.2980625234887	59.948	0.41631	59.699	59.457	59.873	-0.24841					14	10	2	0	0	0	0.03519	1	6621	6621		14.137	0	1	90656	+		55662	20685	38836	38901	61035	61035					0.01455038495282679
NQLSVLAT	8	Unmodified	_NQLSVLAT_					0	0	0		nc|ENSG00000220721|Q8NHA8|OR1F12P	nc|ENSG00000220721|Q8NHA8|OR1F12P	nc|ENSG00000220721|Q8NHA8|OR1F12P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5130920410156	2	423.239993	844.465432	-0.45271	-0.0001916	-0.63937	-0.00027061	-1.0921	-0.00046221	423.2392921718222	31.908	1.2348	31.92	31.583	32.818	0.011797					49	31	3	0	0	0	0.027866	1	2212	2212		23.042	7.4007	1	185630			55663	18728	38837	38902	61036	61036					0.03697809489096926
NQMQAALDPN	10	Unmodified	_NQMQAALDPN_					0	0	0			REV__nc|ENSG00000135018|Q9UMX0-2|UBQLN1	REV__nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3154296875	2	551.253305	1100.49206	-0.56886	-0.00031359	-2.2238	-0.0012259	-2.7926	-0.0015394	551.2518888445771	72.452	0.505	72.254	71.992	72.497	-0.1981					25	11	3	0	0	0	0.03519	1	8503	8503		34.173	7.4796	1	361870	+		55664	36683	38838	38903	61037	61037					-0.054168696818805984
NQMQLFRL	8	Unmodified	_NQMQLFRL_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2785034179688	2	525.281669	1048.54878	-0.75378	-0.00039595	-1.0285	-0.00054025	-1.7823	-0.0009362	525.2812046612289	84.894	0.91375	84.821	84.468	85.382	-0.072769					34	21	2	0	0	0	0.027866	1	10584	10584		55.504	5.4797	1	780890			55665	6324	38839	38904	61038	61038					0.026452226652963873
NQMQLFRL	8	Unmodified	_NQMQLFRL_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2781372070312	2	525.281669	1048.54878	0.22205	0.00011664	-0.53323	-0.0002801	-0.31118	-0.00016346	525.2810786261728	84.94	0.61931	84.737	84.502	85.121	-0.20329					21	14	2	0	0	0	0.027866	1	10241	10241		33.516	0	1	181430			55666	6324	38839	38904	61039	61039					0.026452226652963873
NQMYQKFQI	9	Unmodified	_NQMYQKFQI_					0	0	0			REV__nc|ENSG00000158290|Q13620-3|CUL4B	REV__nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.5550231933594	3	400.534103	1198.58048	2.2919	0.00091797	1.1902	0.00047673	3.4821	0.0013947	400.53483101556185	26.484	0.46908	26.565	26.414	26.883	0.081293					17	10	2	0	0	0	0.024511	1	1340	1340		25.574	14.477	1	70924	+		55667	25187	38840	38905	61040	61040					-0.010868293714111132
NQNCRTPD	8	Unmodified	_NQNCRTPD_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.27978515625	2	474.203615	946.392678	-0.35121	-0.00016655	-0.33647	-0.00015956	-0.68768	-0.0003261	474.20343960561553	55.076	0.36106	54.93	54.761	55.123	-0.14609					11	9	2	0	0	0	0.027866	1	5894	5894		60.972	10.947	1	98413			55668	7931	38841	38906	61041	61041					-0.08266267575982056
NQNDWQASI	9	Unmodified	_NQNDWQASI_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2435913085938	2	538.243795	1074.47304	0.11217	6.0375E-05	0.58689	0.00031589	0.69906	0.00037627	538.2448553985078	55.662	1.4268	55.662	55.319	56.745	0					91	39	6	0	0	0	0.34489	1	6152	6152		69.628	0.8408	1	12697000			55669	6487	38842	38907	61042	61042					-0.06122082981278254
NQNEMFFGD	9	Unmodified	_NQNEMFFGD_					0	0	0		nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;nc|ENSG00000172943|Q9UPP1-5|PHF8;ENST00000490635.1_1_X:54026257-54040884:-|nuORF	nc|ENSG00000172943|Q9UPP1-4|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7985229492188	2	551.218931	1100.42331	-0.70748	-0.00038998	3.5821	0.0019745	2.8746	0.0015845	551.2207109936918	53.064	0.48584	52.917	52.682	53.168	-0.14724					20	12	2	0	0	0	0.024539	1	5721	5721		27.882	4.8398	1	211400			55670	8325	38843	38908	61043	61043					-0.12288533981586625
NQNIAKIII	9	Unmodified	_NQNIAKIII_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8175048828125	2	513.818941	1025.62333	0.6499	0.00033393	-1.5547	-0.00079884	-0.90481	-0.00046491	513.8181162382319	72.563	1.6458	72.282	71.882	73.528	-0.28124					108	39	4	0	0	0	0.35646	1	8846	8846		68.787	6.6794	1	21118000	+		55671	23436	38844	38909	61044	61044					0.11154308748336916
NQNKCRWR	8	Unmodified	_NQNKCRWR_					0	0	0			REV__RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	REV__RNASE3|p.T124Sfs*12|1|0.59|ENSG00000169397|chr14:20892057-20892057|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7982788085938	2	552.777616	1103.54068	-0.58068	-0.00032099	3.4065	0.001883	2.8258	0.0015621	552.7789689483585	51.947	1.6122	52.039	51.684	53.297	0.091938					80	42	3	0	0	0	0.027866	1	5635	5635		31.955	2.8053	1	315890	+		55672	26363	38845	38910	61045	61045					-0.006949115314910159
NQNKKHYGT	9	Unmodified	_NQNKKHYGT_					0	0	0		nc|ENSG00000107938|Q3B7T1-3|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;EDRF1|p.R482T|1|0.16|ENSG00000107938|chr10:125734131-125734131|G/C|missense_variant;nc|ENSG00000107938|Q3B7T1-4|EDRF1	nc|ENSG00000107938|Q3B7T1-3|EDRF1	nc|ENSG00000107938|Q3B7T1-3|EDRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3168334960938	2	545.275429	1088.53631	-0.35614	-0.00019419	3.8192	0.0020825	3.4631	0.0018883	545.2776732664304	89.186	0.46077	89.048	88.607	89.068	-0.13761					12	10	2	0	0	0	0.024427	1	10836	10836		51.335	6.9583	1	70753			55673	2869	38846	38911	61046	61046					-0.004420974733875482
NQNLELRF	8	Unmodified	_NQNLELRF_					0	0	0		nc|ENSG00000174226|Q8N9S9-2|SNX31;ENSG00000174226|ENST00000311812|SNX31	nc|ENSG00000174226|Q8N9S9-2|SNX31	nc|ENSG00000174226|Q8N9S9-2|SNX31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.29541015625	2	517.274898	1032.53524	-0.87128	-0.00045069	0.14392	7.4445E-05	-0.72736	-0.00037625	517.2752919048854	37.341	0.70159	37.121	36.767	37.468	-0.2195					31	17	3	0	0	0	0.027866	1	2951	2951		18.324	0	1	115250			55674	8452	38847	38912	61047	61047					0.020276881577274253
NQNLIEQGI	9	Unmodified	_NQNLIEQGI_					0	0	0			REV__nc|ENSG00000196458|Q86T29-2|ZNF605	REV__nc|ENSG00000196458|Q86T29-2|ZNF605	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2952270507812	2	514.772188	1027.52982	-0.29033	-0.00014945	-4.4048	-0.0022675	-4.6951	-0.0024169	514.7676604905895	73.74	0.66768	73.475	73.058	73.725	-0.26479					32	16	3	0	0	0	0.024319	1	8646	8646		24.519	0	1	360060	+		55675	37054	38848	38913	61048	61048					0.017159645752371944
NQNSSEHNW	9	Unmodified	_NQNSSEHNW_					0	0	0			REV__ENST00000577961.5_1_18:742988-743267:-|nuORF	REV__ENST00000577961.5_1_18:742988-743267:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8322143554688	2	558.228676	1114.4428	-0.47198	-0.00026348	-0.071914	-4.0145E-05	-0.5439	-0.00030362	558.228596641218	39.546	0.43016	39.323	39.073	39.503	-0.22311					15	10	2	0	0	0	0.024495	1	3347	3347		34.173	0	1	119510	+		55676	35485	38849	38914	61049	61049					-0.10984441646496634
NQNYPLLLL	9	Unmodified	_NQNYPLLLL_					0	0	0		nc|ENSG00000124207|P55060-2|CSE1L;CSE1L|p.L290Nfs*23|1|0.08|ENSG00000124207|chr20:49072384-49072385|-/AACTCTAATGCTAACATAAGTAAGAGGAGTAA|frameshift_variant;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-2|CSE1L	nc|ENSG00000124207|P55060-2|CSE1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.2908935546875	2	544.310949	1086.60735	-0.83994	-0.00045719	2.6524	0.0014437	1.8124	0.00098652	544.8138697509303	53.694	1.0416	53.79	53.481	54.523	0.095669					48	29	3	0	0	0	0.024325	1	5790	5790		50.025	0	1	508460			55677	591	38850	38915	61050	61050					0.06750602511442594
NQPEAPYYYVN	11	Unmodified	_NQPEAPYYYVN_					0	0	0		ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.3005065917969	3	453.20682	1356.59863	-0.2892	-0.00013107	-2.1181	-0.00095994	-2.4073	-0.001091	453.20606621293456	27.916	0.23506	27.764	27.649	27.885	-0.15195					9	5	2	0	0	0	0.024789	1	1561	1561		26.75	8.9166	1	66675			55678	8328	38851	38916	61051	61051					-0.06540415915719677
NQPGPIKT	8	Unmodified	_NQPGPIKT_					0	0	0		ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000477342.1_1_7:92116773-92118803:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.24835205078125	2	427.74016	853.465767	0.70193	0.00030024	-0.42337	-0.00018109	0.27856	0.00011915	427.73992970717404	22.355	1.4006	22.166	21.58	22.98	-0.18894					67	29	5	0	0	0	0.027866	1	857	857		27.882	1.0861	1	1641700			55679	4271	38852	38917	61052	61052					0.03317229208948902
NQPLGMGL	8	Unmodified	_NQPLGMGL_					0	0	0		ENST00000390510.1_1_14:22985258-22985300:+|nuORF	ENST00000390510.1_1_14:22985258-22985300:+|nuORF	ENST00000390510.1_1_14:22985258-22985300:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.87896728515625	2	415.215463	828.416374	-0.52132	-0.00021646	-2.9663	-0.0012316	-3.4876	-0.0014481	415.2141208136016	30.836	0.50745	30.595	30.367	30.875	-0.24109					20	11	2	0	0	0	0.027866	1	1993	1993		8.8223	0	1	355570			55680	13387	38853	38918	61053	61053					-0.0046980207149545095
NQPNLGTGIA	10	Unmodified	_NQPNLGTGIA_					0	0	0			REV__ENSG00000100354|ENST00000454349|TNRC6B	REV__ENSG00000100354|ENST00000454349|TNRC6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.3034973144531	2	492.759081	983.503609	-0.32477	-0.00016003	-0.28236	-0.00013914	-0.60713	-0.00029917	492.75858507555716	31.843	0.88678	31.855	31.257	32.144	0.011799					29	21	2	0	0	0	0.03519	1	2143	2143		84.916	20.708	1	137330	+		55681	21098	38854	38919	61054	61054					0.011196954037586693
NQPPAWGSLT	10	Unmodified	_NQPPAWGSLT_					0	0	0			REV__ENST00000373068.6_3_9:130870210-130870522:+|nuORF	REV__ENST00000373068.6_3_9:130870210-130870522:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2840576171875	2	535.766906	1069.51926	-0.91622	-0.00049088	2.9757	0.0015943	2.0595	0.0011034	535.7687049062922	39.131	1.3537	39.131	38.071	39.425	0					57	37	2	0	0	0	0.03519	1	3164	3164		30.318	3.5216	1	228830	+		55682	31232	38855	38920	61055	61055					-0.012720180792030078
NQPRQSWLKYN	11	Unmodified	_NQPRQSWLKYN_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2843017578125	3	478.580992	1432.72115	-0.39249	-0.00018784	-3.8911	-0.0018622	-4.2836	-0.0020501	478.5797200368494	75.498	0.10405	75.498	75.447	75.551	0					4	2	2	0	0	0	0.024876	1	9268	9268		9.2118	0.41249	1	53794			55683	1113	38856	38921	61056	61056					0.022094656063700313
NQPVYNKPI	9	Unmodified	_NQPVYNKPI_					0	0	0			REV__AFF2|p.S101Y|1|0.14|ENSG00000155966|chrX:148662029-148662029|C/A|missense_variant	REV__AFF2|p.S101Y|1|0.14|ENSG00000155966|chrX:148662029-148662029|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.28759765625	2	536.792924	1071.57129	-1.613	-0.00086584	2.2105	0.0011866	0.59749	0.00032073	536.7937106198506	65.54	0.98607	65.326	64.767	65.753	-0.21327					46	23	5	0	0	0	0.024381	1	7549	7549		45.952	10.334	1	797680	+		55684	19082	38857	38922	61057	61057					0.03837145334568959
NQPVYNKPI	9	Unmodified	_NQPVYNKPI_					0	0	0			REV__AFF2|p.S101Y|1|0.14|ENSG00000155966|chrX:148662029-148662029|C/A|missense_variant	REV__AFF2|p.S101Y|1|0.14|ENSG00000155966|chrX:148662029-148662029|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.792924	1071.57129	-0.5401	-0.00028992	1.329	0.0007134	0.78889	0.00042347	536.7931701859004	65.632	0.98696	65.391	64.761	65.748	-0.24145	0.094944	0.00037141	NaN	35.618	38	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	723190	+		55685	19082	38857	38922							0.03837145334568959
NQPYHRSMQQT	11	Unmodified	_NQPYHRSMQQT_					0	0	0		ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant;ENSG00000232040|ENST00000452236|SCAND3	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	ZBED9|p.A1261Cfs*2|1|0.22|ENSG00000232040|chr6:28572108-28572109|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.76422119140625	3	463.882454	1388.62553	-0.38278	-0.00017757	0.11103	5.1505E-05	-0.27175	-0.00012606	463.8824554353035	22.083	0.75117	21.894	21.615	22.366	-0.18895					24	15	2	0	0	0	0.024816	1	720	720		8.0344	0	1	88423			55686	10703	38858	38923	61058	61058					-0.053236305761856784
NQQGFKVQH	9	Unmodified	_NQQGFKVQH_					0	0	0			REV__ENSG00000065548|ENST00000337859|ZC3H15	REV__ENSG00000065548|ENST00000337859|ZC3H15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7965698242188	2	543.277972	1084.54139	-0.14967	-8.1313E-05	-3.1375	-0.0017045	-3.2871	-0.0017858	543.2761069367195	71.975	0.64412	71.7	71.511	72.155	-0.27509					37	15	3	0	0	0	0.024354	1	8453	8453		38.806	1.647	1	860620	+		55687	20314	38859	38924	61059	61059					0.0025020638922796934
NQQIDQVEP	9	Unmodified	_NQQIDQVEP_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2667846679688	2	535.759278	1069.504	-0.28604	-0.00015325	4.2023	0.0022514	3.9162	0.0020982	536.2631902077386	49.07	0.85733	49.07	48.724	49.582	0					51	23	3	0	0	0	0.023007	1	5043	5043		76.774	4.8967	1	906630	+		55688	28858	38860	38925	61060	61060					-0.027969296670335098
NQQIDQVEP	9	Unmodified	_NQQIDQVEP_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	535.759278	1069.504	-0.80214	-0.00042976	7.5872	0.0040649	6.785	0.0036352	535.7630274507628	49.146	0.72282	49.045	48.655	49.377	-0.1008	-0.030089	0.0011022	NaN	76.774	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1174100	+		55689	28858	38860	38925							-0.027969296670335098
NQQIDQVEP	9	Unmodified	_NQQIDQVEP_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.759278	1069.504	-0.57401	-0.00030753	7.0005	0.0037506	6.4265	0.0034431	535.7626761953293	49.243	0.74908	49.061	48.595	49.344	-0.18206	-0.013522	0.00047353	NaN	76.774	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1242900	+		55690	28858	38860	38925							-0.027969296670335098
NQQIRQTCV	9	Unmodified	_NQQIRQTCV_					0	0	0		ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.277115	1088.53968	-0.75812	-0.00041338	-3.4958	-0.0019062	-4.254	-0.0023196	545.2749933160212	88.94	0.41978	88.769	88.505	88.924	-0.17054					14	9	2	0	0	0	0.02435	1	10825	10825		34.173	0	1	45888			55691	2177	38861	38926	61061	61061					-0.0010517069104025722
NQQKDSIPSI	10	Unmodified	_NQQKDSIPSI_					0	0	0		ENSG00000171408|ENST00000308191|PDE7B	ENSG00000171408|ENST00000308191|PDE7B	ENSG00000171408|ENST00000308191|PDE7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.749267578125	2	565.296027	1128.5775	-0.52918	-0.00029915	2.0638	0.0011666	1.5346	0.0008675	565.2971136217853	56.092	0.54504	55.936	55.628	56.173	-0.15601					26	14	3	0	0	0	0.03519	1	6161	6161		33.922	1.1092	1	251560			55692	8144	38862	38927	61062	61062					0.01835618775430703
NQQKQYICS	9	Unmodified	_NQQKQYICS_					0	0	0		ENST00000470606.5_1_13:28000472-28009731:+|nuORF;nc|ENSG00000122034|Q92664-2|GTF3A;ENSG00000122034|ENST00000381140|GTF3A	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	ENST00000470606.5_1_13:28000472-28009731:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2769165039062	2	556.263673	1110.51279	-0.42477	-0.00023628	-2.6151	-0.0014547	-3.0399	-0.001691	556.2621500756151	41.903	1.2192	41.672	41.311	42.53	-0.23186					61	32	2	0	0	0	0.024427	1	3669	3669		42.396	13.226	1	255100			55693	3909	38863	38928	61063	61063					-0.03804279302221403
NQQLLCVL	8	Unmodified	_NQQLLCVL_					0	0	0		ENSG00000169154|ENST00000307599|GOT1L1	ENSG00000169154|ENST00000307599|GOT1L1	ENSG00000169154|ENST00000307599|GOT1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7950439453125	2	465.757495	929.500437	-0.32964	-0.00015353	-2.6358	-0.0012276	-2.9654	-0.0013812	465.75592273303374	33.622	0.58389	33.422	33.133	33.717	-0.20019					31	14	4	0	0	0	0.027866	1	2446	2446		35.201	1.6851	1	511060			55694	7907	38864	38929	61064	61064					0.03286729025387558
NQQQSLYGY	9	Unmodified	_NQQQSLYGY_					0	0	0			REV__nc|ENSG00000142453|Q86X55-2|CARM1	REV__nc|ENSG00000142453|Q86X55-2|CARM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8079833984375	2	550.753995	1099.49344	0.17069	9.4008E-05	1.2618	0.00069492	1.4324	0.00078892	550.7542841909252	56.373	0.3532	56.157	55.998	56.351	-0.21607					14	8	2	0	0	0	0.024506	1	6090	6090		23.042	10.836	1	77242	+		55695	24153	38865	38930	61065	61065					-0.05232912321457661
NQQRKRTG	8	Unmodified	_NQQRKRTG_					0	0	0		nc|ENSG00000099260|Q9NP74-2|PALMD	nc|ENSG00000099260|Q9NP74-2|PALMD	nc|ENSG00000099260|Q9NP74-2|PALMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.30010986328125	2	494.275764	986.536974	-0.0052604	-2.6001E-06	-4.1562	-0.0020543	-4.1614	-0.0020569	494.27322748115915	96.218	0.53393	96.218	95.95	96.484	0					20	12	3	0	0	0	0.027866	1	12260	12260		53.351	10.877	1	134110			55696	18119	38866	38931	61066	61066					0.04316741966340487
NQQRLFSLKT	10	Unmodified	_NQQRLFSLKT_					0	0	0		nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;KIAA0391-FAM177A1|1|fusion;KIAA0391-FAM177A1|3|fusion	nc|ENSG00000100890|O15091-2|PRORP	nc|ENSG00000100890|O15091-2|PRORP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.25537109375	3	412.234933	1233.68297	-1.0625	-0.00043801	2.1371	0.000881	1.0746	0.00044299	412.23534271917157	21.197	0.49393	20.984	20.673	21.167	-0.2128					14	9	2	0	0	0	0.03519	1	592	592		18.531	7.0764	1	21027			55697	2255	38867	38932	61067	61067					0.07547579691686224
NQREKPLAL	9	Unmodified	_NQREKPLAL_					0	0	0		ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ENSG00000108602|ENST00000225740|ALDH3A1	ENSG00000108602|ENST00000225740|ALDH3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.8115844726562	2	534.811648	1067.60874	-0.098457	-5.2656E-05	0.15394	8.2329E-05	0.055483	2.9673E-05	534.8115438410836	32.247	0.68573	32.055	31.771	32.457	-0.19261					43	15	4	0	0	0	0.53979	1	2213	2213		56.721	9.0637	1	833630			55698	2918	38868	38933	61068	61068					0.07764236600155527
NQRGRRSTITY	11	Unmodified	_NQRGRRSTITY_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2459716796875	3	451.244491	1350.71164	-0.8301	-0.00037458	2.0697	0.00093394	1.2396	0.00055936	451.2453946944836	45.914	1.0156	45.712	45.391	46.406	-0.20226					94	27	5	0	0	0	0.98625	1	4363	4363		39.873	1.1591	1	10373000	+		55699	25017;36804	38869	38934	61069	61069					0.05031697320850981
NQRKKQID	8	Unmodified	_NQRKKQID_					0	0	0			REV__nc|ENSG00000130595|P45378-5|TNNT3	REV__nc|ENSG00000130595|P45378-5|TNNT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3134155273438	2	515.293622	1028.57269	-0.10391	-5.3546E-05	-3.7742	-0.0019448	-3.8781	-0.0019984	515.2916442643842	68.304	0.41763	68.323	68.118	68.536	0.018921					13	10	2	0	0	0	0.027866	1	8123	8123		57.811	0	1	82578	+		55700	23129	38870	38935	61070	61070					0.05954779423313994
NQRKLPKD	8	Unmodified	_NQRKLPKD_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80010986328125	2	499.790715	997.566878	-0.87697	-0.0004383	-0.13484	-6.7392E-05	-1.0118	-0.00050569	499.7900503717086	28.927	0.54299	28.927	28.53	29.073	0					19	12	2	0	0	0	0.027866	1	1697	1697		25.45	0	1	130530			55701	9736	38871	38936	61071	61071					0.06799680911660744
NQRKWRNQ	8	Unmodified	_NQRKWRNQ_					0	0	0			REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	REV__nc|ENSG00000146530|Q8N2E2-3|VWDE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.3135375976562	2	565.302313	1128.59007	1.0165	0.00057461	3.2426	0.001833	4.259	0.0024076	565.3043231700462	59.666	0.51617	59.469	59.173	59.689	-0.19742					28	12	3	0	0	0	0.027866	1	6595	6595		12.207	1.3413	1	500040	+		55702	24498	38872	38937	61072	61072					0.030921197489760743
NQRLIFIN	8	Unmodified	_NQRLIFIN_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.30230712890625	2	509.295633	1016.57671	-0.4262	-0.00021706	3.0291	0.0015427	2.6029	0.0013256	509.29583239806243	54.859	0.37849	54.713	54.533	54.911	-0.14609					12	9	2	0	0	0	0.027866	1	5851	5851		33.516	0	1	85761			55703	7259	38873	38938	61073	61073					0.06908868917025757
NQRLIVEII	9	Unmodified	_NQRLIVEII_					0	0	0			REV__DTD1-RALGAPA2|1|fusion	REV__DTD1-RALGAPA2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3369140625	2	549.337498	1096.66044	-0.18492	-0.00010158	-0.40479	-0.00022237	-0.5897	-0.00032395	549.3372560297237	68.425	0.93625	68.444	68.004	68.941	0.018913					77	24	4	0	0	0	0.39228	1	8151	8151		66.429	4.3219	1	8727300	+		55704	19715	38874	38939	61074	61074					0.11597980294095578
NQRPVTRG	8	Unmodified	_NQRPVTRG_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-2|RBMS3	REV__nc|ENSG00000144642|Q6XE24-2|RBMS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.26123046875	2	464.259582	926.504612	-0.2665	-0.00012373	3.4544	0.0016037	3.1879	0.00148	464.2609704984401	60.034	1.0922	59.786	59.417	60.51	-0.24842					63	27	4	0	0	0	0.80469	1	6638	6638		58.782	2.0609	1	3212600	+		55705	36749	38875	38940	61075	61075					0.038419545633246344
NQRREALL	8	Unmodified	_NQRREALL_					0	0	0		ENST00000556440.6_2_17:62503037-62503232:+|nuORF	ENST00000556440.6_2_17:62503037-62503232:+|nuORF	ENST00000556440.6_2_17:62503037-62503232:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.25311279296875	2	500.28834	998.562127	0.29597	0.00014807	2.1782	0.0010897	2.4741	0.0012378	500.2896406828822	95.189	1.0741	95.193	94.922	95.996	0.0041199					53	24	3	0	0	0	0.027866	1	12140	12140		79.451	24.729	1	310480			55706	16711	38876	38941	61076	61076					0.06278796768901884
NQRREALL	8	Unmodified	_NQRREALL_					0	0	0		ENST00000556440.6_2_17:62503037-62503232:+|nuORF	ENST00000556440.6_2_17:62503037-62503232:+|nuORF	ENST00000556440.6_2_17:62503037-62503232:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	500.28834	998.562127	0.0042186	2.1105E-06	2.1574	0.0010793	2.1616	0.0010814	500.289747902694	95.198	1.1185	95.198	94.444	95.562	0	0.068475	1.4455E-05	NaN	79.451	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277500			55707	16711	38876	38941							0.06278796768901884
NQRRRRPLRRR	11	Unmodified	_NQRRRRPLRRR_					0	0	0		ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	ENST00000503648.1_1_16:1451355-1464692:-|nuORF	ENST00000503648.1_1_16:1451355-1464692:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7717895507812	3	521.992835	1562.95667	0.41834	0.00021837	-3.2194	-0.0016805	-2.8011	-0.0014621	522.3254851351285	72.14	1.0665	72.149	71.878	72.944	0.0097733					40	26	2	0	0	0	0.024898	1	8733	8733		0.31226	0	1	108360			55708	1221	38877	38942	61077	61077					0.1977146036499562
NQSNDPYSQ	9	Unmodified	_NQSNDPYSQ_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7760620117188	2	526.71761	1051.42067	-0.60008	-0.00031607	0.068889	3.6285E-05	-0.53119	-0.00027979	526.7178189382247	31.117	0.32178	30.932	30.702	31.023	-0.18503					10	7	2	0	0	0	0.024447	1	2039	2039		25.574	0	1	42951			55709	1189	38878	38943	61078	61078					-0.10298666114908883
NQSPMSLTS	9	Unmodified	_NQSPMSLTS_					0	0	0		nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC;nc|ENSG00000095787|Q9BTA9-5|WAC;ENST00000345541.6_1_10:28900683-28903615:+|nuORF	nc|ENSG00000095787|Q9BTA9-2|WAC	nc|ENSG00000095787|Q9BTA9-2|WAC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2569274902344	2	482.723849	963.433146	-0.45545	-0.00021986	0.42331	0.00020434	-0.032141	-1.5515E-05	482.72394533477814	36.529	1.4254	36.486	35.864	37.289	-0.042454					62	38	2	0	0	0	0.024495	1	2941	2941		34.173	11.13	1	155510			55710	2038	38879	38944	61079	61079					-0.05003345976217588
NQSRAPIVLL	10	Unmodified	_NQSRAPIVLL_					0	0	0			REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.8367919921875	2	555.835123	1109.65569	0.92917	0.00051647	4.1512	0.0023074	5.0803	0.0028238	555.8367682143568	106.52	0.46851	106.52	106.25	106.72	0					29	14	3	0	0	0	1.089	1	13697	13697		34.173	3.6689	1	93013	+		55711	23701	38880	38945	61080	61080					0.10525096151332036
NQSRYSDK	8	Unmodified	_NQSRYSDK_					0	0	0			REV__ENST00000454366.1_1_22:46704454-46704508:+|nuORF	REV__ENST00000454366.1_1_22:46704454-46704508:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.2349548339844	2	499.238513	996.462472	0.22386	0.00011176	1.5515	0.00077458	1.7754	0.00088633	499.7429323906471	57	1.1443	56.798	56.404	57.549	-0.20208					79	30	6	0	0	0	0.027866	1	6209	6209		29.15	0	1	8987400	+		55712	32759	38881	38946	61081	61081					-0.0359006563571711
NQSSLYTPEV	10	Unmodified	_NQSSLYTPEV_					0	0	0			REV__ENSG00000096088|ENST00000373025|PGC	REV__ENSG00000096088|ENST00000373025|PGC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.2766723632812	2	569.274761	1136.53497	-1.108	-0.00063075	4.4049	0.0025076	3.2969	0.0018768	569.2769780262627	79.841	2.7082	79.669	79.15	81.858	-0.17225					169	65	4	0	0	0	0.75651	1	9991	9991		63.534	1.4264	1	2401400	+		55713	20982	38882	38947	61082	61082					-0.027837763527941206
NQSTKKQVI	9	Unmodified	_NQSTKKQVI_					0	0	0		POU2F1-CNTNAP3|2|fusion;POU2F1-CNTNAP3|3|fusion;POU2F1-CNTNAP3|1|fusion;ENST00000493965.5_1_9:39078319-39086841:-|nuORF;ENSG00000106714|ENST00000297668|CNTNAP3	POU2F1-CNTNAP3|2|fusion	POU2F1-CNTNAP3|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3034057617188	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.67687	1	11155	11155		47.657	1.6851	1	11897000			55714	18981	38883	38948	61083	61083					0.07224530363282611
NQSVTTEDTE	10	Unmodified	_NQSVTTEDTE_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2688598632812	2	562.241115	1122.46768	0.24275	0.00013649	2.3527	0.0013228	2.5954	0.0014593	562.2424872388084	79.733	0.50328	79.514	79.369	79.873	-0.21923					18	11	2	0	0	0	0.03519	1	9531	9531		30.318	0	1	304060	+		55715	36770	38884	38949	61084	61084					-0.08865851354426013
NQTALLKR	8	Unmodified	_NQTALLKR_					0	0	0		ENST00000466187.2_1_10:70105306-70105504:-|nuORF	ENST00000466187.2_1_10:70105306-70105504:-|nuORF	ENST00000466187.2_1_10:70105306-70105504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7707824707031	2	472.287808	942.561064	-0.49998	-0.00023613	3.8616	0.0018238	3.3616	0.0015876	472.28944684681926	44.518	2.7766	44.374	43.745	46.522	-0.14471					191	80	3	0	0	0	0.027866	1	4349	4349		30.504	1.3541	1	1304300			55716	14805	38885	38950	61085	61085					0.08748582400005489
NQTCDGELL	9	Unmodified	_NQTCDGELL_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.766357421875	2	496.721307	991.42806	-0.51131	-0.00025398	0.54309	0.00026976	0.03178	1.5786E-05	496.72165454486236	62.427	0.43042	62.169	61.897	62.327	-0.25824					20	10	3	0	0	0	0.024405	1	7008	7008		53.351	12.779	1	281570			55717	7509	38886	38951	61086	61086					-0.06799649838819732
NQTIIKKNS	9	Unmodified	_NQTIIKKNS_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2955322265625	2	523.303655	1044.59276	-0.56135	-0.00029376	0.41111	0.00021513	-0.15024	-7.8623E-05	523.3038190618353	44.922	0.47387	44.711	44.436	44.91	-0.21109					22	11	3	0	0	0	0.024477	1	4176	4176		27.882	0	1	220130	+		55718	23832;36707	38887	38952	61087	61087					0.07224530363282611
NQTIIKKNS	9	Unmodified	_NQTIIKKNS_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-3|KIF20B;REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.303655	1044.59276	-0.46773	-0.00024477	-0.20734	-0.0001085	-0.67507	-0.00035327	523.3034123441046	44.927	0.43597	44.674	44.429	44.865	-0.25252	-0.00011012	-0.00036208	NaN	25.574	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238280	+		55719	23832;36707	38887	38952							0.07224530363282611
NQTLCEGLAP	10	Unmodified	_NQTLCEGLAP_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2896118164062	2	523.252774	1044.491	-0.70547	-0.00036914	-0.60204	-0.00031502	-1.3075	-0.00068416	523.2522930413503	57.137	0.39367	56.97	56.823	57.216	-0.1672					17	10	2	0	0	0	0.03519	1	6211	6211		44.377	0	1	426590			55720	9697	38888	38953	61088	61088					-0.029470840507883622
NQTLKKIILE	10	Unmodified	_NQTLKKIILE_					0	0	0		GPRC6A|p.R260Q|1|0.1|ENSG00000173612|chr6:116806926-116806926|C/T|missense_variant	GPRC6A|p.R260Q|1|0.1|ENSG00000173612|chr6:116806926-116806926|C/T|missense_variant	GPRC6A|p.R260Q|1|0.1|ENSG00000173612|chr6:116806926-116806926|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.58441162109375	3	400.583451	1198.72852	0.118	4.727E-05	1.4742	0.00059053	1.5922	0.0006378	400.5840285241121	25.26	0.93346	25.089	24.732	25.666	-0.17151					55	21	4	0	0	0	0.70529	1	1157	1157		66.92	13.831	1	1569200			55721	17691	38889	38954	61089	61089					0.13710805154119043
NQTPVTLQV	9	Unmodified	_NQTPVTLQV_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.2774658203125	2	500.277106	998.53966	0.05294	2.6485E-05	-0.50311	-0.00025169	-0.45017	-0.00022521	500.27705004768586	61.05	1.7142	61.05	60.33	62.044	0					158	45	6	0	0	0	0.01388	5	7057	7018;7027;7039;7057;7069		209.84	99.72	1	57375000			55722	18059	38890	38955	61090;61091;61092;61093;61094	61093					0.040331525806209356
NQTPVTLQV	9	Unmodified	_NQTPVTLQV_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.27685546875	2	500.277106	998.53966	-0.12884	-6.4456E-05	-0.38243	-0.00019132	-0.51127	-0.00025578	500.2771537465331	61.293	1.5262	61.066	60.63	62.156	-0.22663					130	40	4	0	0	0	0.012922	6	7048	7025;7036;7048;7060;7072;7085		199.7	84.21	1	56902000			55723	18059	38890	38955	61095;61096;61097;61098;61099;61100	61097					0.040331525806209356
NQTPVTLQV	9	Unmodified	_NQTPVTLQV_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2769775390625	2	500.277106	998.53966	-0.20394	-0.00010203	-0.35474	-0.00017747	-0.55868	-0.00027949	500.27720751017523	61.007	1.4971	61.078	60.529	62.026	0.071125					136	39	6	0	0	0	0.013293	6	6950	6928;6938;6950;6962;6974;6986		195.06	81.652	1	57051000			55724	18059	38890	38955	61101;61102;61103;61104;61105;61106	61103					0.040331525806209356
NQTRKLRHDLY	11	Unmodified	_NQTRKLRHDLY_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.7882995605469	3	481.932025	1442.77424	0.27109	0.00013065	3.9427	0.0019001	4.2138	0.0020308	482.26760187367745	31.65	1.3796	31.409	30.915	32.294	-0.24109					43	33	2	0	0	0	0.024809	1	2064	2064		17.167	0	1	196900	+		55725	23803	38891	38956	61107	61107					0.07056843389023015
NQTRKLRHDLY	11	Unmodified	_NQTRKLRHDLY_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	481.932025	1442.77424	-0.31597	-0.00015228	5.4269	0.0026154	5.111	0.0024631	481.9351252311788	31.565	0.32413	31.565	31.386	31.71	0	0.095207	0.0012946	NaN	17.167	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51186	+		55726	23803	38891	38956							0.07056843389023015
NQTRKLRHDLY	11	Unmodified	_NQTRKLRHDLY_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	481.932025	1442.77424	-0.17377	-8.3743E-05	6.3153	0.0030435	6.1415	0.0029598	481.93531380115684	31.453	0.32621	31.465	31.257	31.583	0.011799	-0.0049739	0.0025791	NaN	17.167	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81301	+		55727	23803	38891	38956							0.07056843389023015
NQTRKLRHDLY	11	Unmodified	_NQTRKLRHDLY_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	481.932025	1442.77424	-0.16557	-7.9794E-05	4.5091	0.0021731	4.3435	0.0020933	482.26795535564935	31.618	1.2013	31.432	31.099	32.3	-0.18503	-0.037022	-3.2327E-05	NaN	17.167	35	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168540	+		55728	23803	38891	38956							0.07056843389023015
NQTRKLRHDLY	11	Unmodified	_NQTRKLRHDLY_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	481.932025	1442.77424	-0.19403	-9.3508E-05	4.13	0.0019904	3.936	0.0018969	482.2678613642411	31.629	0.8876	31.477	31.197	32.084	-0.15231	0.0070483	-0.00058046	NaN	17.167	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285720	+		55729	23803	38891	38956							0.07056843389023015
NQTRNLDSR	9	Unmodified	_NQTRNLDSR_					0	0	0		ENST00000542991.1_1_12:14548043-14548088:+|nuORF	ENST00000542991.1_1_12:14548043-14548088:+|nuORF	ENST00000542991.1_1_12:14548043-14548088:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.32666015625	2	552.281243	1102.54793	-0.80787	-0.00044617	-2.4831	-0.0013714	-3.291	-0.0018175	552.2796738331753	64.869	0.55256	64.907	64.634	65.187	0.037384					24	14	2	0	0	0	0.024495	1	7599	7599		26.693	4.733	1	219370			55730	16464	38892	38957	61108	61108					0.0007609954993768042
NQTRNLDSR	9	Unmodified	_NQTRNLDSR_					0	0	0		ENST00000542991.1_1_12:14548043-14548088:+|nuORF	ENST00000542991.1_1_12:14548043-14548088:+|nuORF	ENST00000542991.1_1_12:14548043-14548088:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.281243	1102.54793	-1.0774	-0.00059504	-2.5031	-0.0013824	-3.5805	-0.0019775	552.279665319481	64.755	0.65962	64.755	64.499	65.158	0	-0.083622	-6.7416E-06	NaN	24.519	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223310			55731	16464	38892	38957							0.0007609954993768042
NQTSDLHEF	9	Unmodified	_NQTSDLHEF_					0	0	0			REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3023071289062	2	545.743628	1089.4727	-0.95242	-0.00051978	-2.4402	-0.0013317	-3.3926	-0.0018515	545.7420113014817	64.62	1.7618	64.365	63.919	65.681	-0.25563					62	43	2	0	0	0	0.024427	1	7391	7391		42.396	3.59	1	201940	+		55732	26798	38893	38958	61109	61109					-0.06845502701139594
NQTVARVPL	9	Unmodified	_NQTVARVPL_					0	0	0			REV__nc|ENSG00000164916|P85037-2|FOXK1	REV__nc|ENSG00000164916|P85037-2|FOXK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2879638671875	2	499.293091	996.571629	0.51375	0.00025651	1.5109	0.00075436	2.0246	0.0010109	499.2939478948518	49.207	1.0951	49.207	48.413	49.508	0					50	30	3	0	0	0	0.024021	1	5057	5057		49.442	12.282	1	781090	+		55733	25817	38894	38959	61110	61110					0.07320565054419603
NQTYRGFW	8	Unmodified	_NQTYRGFW_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;PTPRU|p.Q740Rfs*47|1|0.23|ENSG00000060656|chr1:29284767-29284767|C/-|frameshift_variant	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2967529296875	2	536.253966	1070.49338	0.31211	0.00016737	-0.94904	-0.00050893	-0.63693	-0.00034156	536.2536309735235	79.786	0.37611	79.539	79.362	79.738	-0.2465					10	8	2	0	0	0	0.027866	1	9541	9541		40.573	12.318	1	76235			55734	1236	38895	38960	61111	61111					-0.0390486753078676
NQVCHIAKYM	10	Unmodified	_NQVCHIAKYM_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.55084228515625	3	402.863454	1205.56853	0.84527	0.00034053	0.25651	0.00010334	1.1018	0.00044387	402.86340805743697	23.457	0.59796	23.255	23.014	23.612	-0.20193					27	13	3	0	0	0	0.03519	1	923	923		32.751	7.6245	1	187170	+		55735	22185	38896	38961	61112	61112					-0.026027693862488377
NQVDTEFLH	9	Unmodified	_NQVDTEFLH_					0	0	0			REV__ENSG00000150054|ENST00000683449|MPP7	REV__ENSG00000150054|ENST00000683449|MPP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2675170898438	2	551.76182	1101.50909	-0.4067	-0.0002244	-4.4726	-0.0024678	-4.8793	-0.0026922	551.7583472856813	25.635	0.37906	25.464	25.2	25.579	-0.17151					13	8	2	0	0	0	0.024436	1	1213	1213		23.042	0	1	54956	+		55736	24710	38897	38962	61113	61113					-0.0376062580442067
NQVEIDWVC	9	Unmodified	_NQVEIDWVC_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.814208984375	2	553.252774	1104.491	0.046412	2.5678E-05	3.5321	0.0019541	3.5785	0.0019798	553.2544059740499	58.484	0.56516	58.297	58.139	58.704	-0.18686					18	13	2	0	0	0	0.024209	1	6424	6424		56.721	15.294	1	448450	+		55737	27992	38898	38963	61114	61114					-0.057070840507776666
NQVEIDWVC	9	Unmodified	_NQVEIDWVC_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.252774	1104.491	0.22423	0.00012406	2.7031	0.0014955	2.9274	0.0016196	553.2541205517656	58.246	0.65945	58.246	58.02	58.679	0	-0.049949	-0.00047009	NaN	47.657	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	599270	+		55738	27992	38898	38963							-0.057070840507776666
NQVEIDWVC	9	Unmodified	_NQVEIDWVC_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.252774	1104.491	-0.60415	-0.00033425	3.3852	0.0018728	2.781	0.0015386	553.2545511441257	58.504	0.62035	58.317	58.101	58.721	-0.18705	0.021824	0.00028456	NaN	47.657	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597400	+		55739	27992	38898	38963							-0.057070840507776666
NQVEIDWVC	9	Unmodified	_NQVEIDWVC_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.252774	1104.491	-0.18787	-0.00010394	3.2205	0.0017818	3.0327	0.0016778	553.2544378716997	58.146	0.6566	58.238	58.015	58.671	0.091217	-0.058075	0.0001024	NaN	47.657	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562300	+		55740	27992	38898	38963							-0.057070840507776666
NQVERGKIKTK	11	Unmodified	_NQVERGKIKTK_					0	0	0		ENST00000359359.6_3_6:36891226-36891394:+|nuORF	ENST00000359359.6_3_6:36891226-36891394:+|nuORF	ENST00000359359.6_3_6:36891226-36891394:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.914306640625	3	434.261371	1299.76228	-0.25375	-0.00011019	-3.9191	-0.0017019	-4.1729	-0.0018121	434.25896351638823	41.872	0.22569	41.64	41.469	41.695	-0.23186					6	5	2	0	0	0	0.024734	1	3718	3718		24.276	0	1	19745			55741	12736	38899	38964	61115	61115					0.1243922664582442
NQVFIKNII	9	Unmodified	_NQVFIKNII_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3005981445312	2	544.826766	1087.63898	-1.4941	-0.000814	3.5571	0.001938	2.0631	0.001124	544.8285094100104	64.606	0.41975	64.343	64.193	64.613	-0.2626					19	10	2	0	0	0	0.024487	1	7557	7557		24.203	4.8428	1	286860	+		55742	19683	38900	38965	61116	61116					0.09866595265384603
NQVIVQSGRH	10	Unmodified	_NQVIVQSGRH_					0	0	0		nc|ENSG00000140386|Q9BY12-3|SCAPER;ENSG00000140386|ENST00000563290|SCAPER	nc|ENSG00000140386|Q9BY12-3|SCAPER	nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.3108520507812	2	569.309803	1136.60505	-0.49878	-0.00028396	1.3998	0.00079693	0.90104	0.00051297	569.3105255305654	39.027	1.3972	38.804	38.457	39.854	-0.22311					94	36	4	0	0	0	1.0271	1	3293	3293		42.396	1.618	1	9012200			55743	5405	38901	38966	61117	61117					0.042215668263452244
NQVLCKEID	9	Unmodified	_NQVLCKEID_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;SECISBP2L|p.E1046Dfs*13|1|0.05|ENSG00000138593|chr15:48992412-48992413|-/ACTG|frameshift_variant;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2763061523438	2	531.268424	1060.5223	-0.807	-0.00042874	-1.8714	-0.0009942	-2.6784	-0.0014229	531.2672673314243	57.731	0.99431	57.827	57.608	58.602	0.095306					52	26	4	0	0	0	0.023655	1	6416	6416		79.713	26.776	1	4008500			55744	5251	38902	38967	61118	61118					-0.005545110166849554
NQVLDSLVPLL	11	Unmodified	_NQVLDSLVPLL_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8561401367188	2	605.855721	1209.69689	-1.4098	-0.00085415	1.6324	0.00098897	0.22254	0.00013482	605.8565152537026	81.991	1.204	81.991	81.589	82.793	0					74	28	4	0	0	0	0.96599	1	10252	10252		44.377	5.6236	1	2448100			55745	2315	38903	38968	61119	61119					0.10042812400138246
NQVLDSLVPLL	11	Unmodified	_NQVLDSLVPLL_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8555908203125	2	605.855721	1209.69689	-0.21421	-0.00012978	0.13397	8.1166E-05	-0.080242	-4.8615E-05	605.8556684179202	82.138	1.2043	81.955	81.559	82.763	-0.18237					89	27	5	0	0	0	0.87847	1	9906	9906		52.937	6.9645	1	2719900			55746	2315	38903	38968	61120	61120					0.10042812400138246
NQVLDSLVPLL	11	Unmodified	_NQVLDSLVPLL_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.855712890625	2	605.855721	1209.69689	-0.99481	-0.00060271	0.90994	0.00055129	-0.084866	-5.1417E-05	605.8561374564249	82.054	1.4639	81.914	81.572	83.036	-0.14014					87	33	4	0	0	0	0.75995	1	9892	9892		60.118	8.7828	1	2530200			55747	2315	38903	38968	61121	61121					0.10042812400138246
NQVLKSGY	8	Unmodified	_NQVLKSGY_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ADGRV1|p.I1126Nfs*11|1|0.23|ENSG00000164199|chr5:90651689-90651690|-/A|frameshift_variant	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.74493408203125	2	454.745442	907.476331	0.44258	0.00020126	-1.8786	-0.00085427	-1.436	-0.00065301	454.7444987549907	101.14	1.784	101.14	100.7	102.48	0					105	40	5	0	0	0	1.0133	1	12956	12956		35.201	1.0282	1	4485300			55748	7239	38904	38969	61122	61122					0.01889211863374385
NQVLSRLYW	9	Unmodified	_NQVLSRLYW_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.8200073242188	2	589.819473	1177.62439	-0.90796	-0.00053553	1.66	0.00097912	0.75207	0.00044359	589.8202601296089	69.895	0.91073	69.628	69.287	70.198	-0.26724					60	19	4	0	0	0	0.29158	2	8135	8110;8135		76.774	9.2805	1	2042900	+		55749	27366	38905	38970	61123;61124	61124					0.042685231172072235
NQVLSRLYW	9	Unmodified	_NQVLSRLYW_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.8198852539062	2	589.819473	1177.62439	-0.61035	-0.00036	1.2392	0.0007309	0.62885	0.00037091	589.8199842203446	69.797	0.89934	69.575	69.266	70.165	-0.22245					63	20	4	0	0	0	0.39228	1	8106	8106		66.429	2.8954	1	2633300	+		55750	27366	38905	38970	61125	61125					0.042685231172072235
NQVQADKVQ	9	Unmodified	_NQVQADKVQ_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.30810546875	2	515.269813	1028.52507	-0.17313	-8.921E-05	4.0499	0.0020868	3.8768	0.0019976	515.2716444179822	63.33	0.93462	63.079	62.724	63.659	-0.25141					42	24	4	0	0	0	0.024261	1	7319	7319		45.972	0	1	2228600	+	+	55751	19604	38906	38971	61126	61126					0.011950804324669662
NQVTVDSITP	10	Unmodified	_NQVTVDSITP_					0	0	0		ENST00000479033.1_1_10:5691052-5708523:-|nuORF;nc|ENSG00000196372|Q8WXK3-2|ASB13;ENSG00000196372|ENST00000357700|ASB13	ENST00000479033.1_1_10:5691052-5708523:-|nuORF	ENST00000479033.1_1_10:5691052-5708523:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2442626953125	2	537.277303	1072.54005	-0.13622	-7.3188E-05	-4.413	-0.002371	-4.5492	-0.0024442	537.2740350362436	55.829	0.49681	55.829	55.573	56.07	0					18	13	2	0	0	0	0.03519	1	6164	6164		69.628	10.846	1	90722			55752	9862	38907	38972	61127	61127					0.006685275098107013
NQVVLADAPVT	11	Unmodified	_NQVVLADAPVT_					0	0	0		nc|ENSG00000154134|Q96MS0-2|ROBO3;ENSG00000154134|ENST00000397801|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7646484375	2	563.808771	1125.60299	0.3763	0.00021216	3.3743	0.0019025	3.7506	0.0021146	563.8107397696914	77.021	0.41708	76.753	76.509	76.927	-0.26806					19	9	3	0	0	0	0.024747	1	9139	9139		18.262	0	1	301500			55753	6385	38908	38973	61128	61128					0.04521093297830703
NQVVQQQV	8	Unmodified	_NQVVQQQV_					0	0	0			REV__SMARCD1|p.A115V|1|0.2|ENSG00000066117|chr12:50086327-50086327|C/T|missense_variant	REV__SMARCD1|p.A115V|1|0.2|ENSG00000066117|chr12:50086327-50086327|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2683410644531	2	471.753798	941.493044	0.19798	9.3398E-05	4.3556	0.0020548	4.5536	0.0021482	471.7557635546852	67.427	0.39616	67.138	66.992	67.388	-0.28835					16	9	2	0	0	0	0.027866	1	8003	8003		38.806	16.846	1	136660	+		55754	37516	38909	38974	61129	61129					0.01995712749339873
NQVVTTIPVT	10	Unmodified	_NQVVTTIPVT_					0	0	0		nc|ENSG00000205084|Q9H6L2-2|TMEM231;ENST00000564318.1_1_16:75573894-75575375:-|nuORF;nc|ENSG00000205084|Q9H6L2-3|TMEM231;ENSG00000205084|ENST00000258173|TMEM231	nc|ENSG00000205084|Q9H6L2-2|TMEM231	nc|ENSG00000205084|Q9H6L2-2|TMEM231	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.23828125	2	536.305864	1070.59717	-1.1558	-0.00061987	0.13592	7.2892E-05	-1.0199	-0.00054698	536.3043244454572	60.497	0.21563	60.497	60.33	60.546	0					7	5	2	0	0	0	0.03519	1	6949	6949		109.48	0	1	129600			55755	18668	38910	38975	61130	61130					0.06469994786198185
NQVWLVQP	8	Unmodified	_NQVWLVQP_					0	0	0			REV__ENST00000477546.5_1_3:49881200-49893910:-|nuORF	REV__ENST00000477546.5_1_3:49881200-49893910:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.7712707519531	2	492.269084	982.523616	-0.23364	-0.00011501	-3.5988	-0.0017716	-3.8325	-0.0018866	492.2669179923295	37.045	0.99952	37.078	36.678	37.677	0.032269					73	25	4	0	0	0	0.6248	1	2909	2909		73.975	2.0973	1	11695000	+		55756	33336	38911	38976	61131	61131					0.03165491134370768
NQWVLVKW	8	Unmodified	_NQWVLVKW_					0	0	0			REV__LRP4|p.R1158W|1|0.18|ENSG00000134569|chr11:46876530-46876530|G/A|missense_variant	REV__LRP4|p.R1158W|1|0.18|ENSG00000134569|chr11:46876530-46876530|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.8289794921875	2	536.800552	1071.58655	-0.7891	-0.00042359	1.8943	0.0010169	1.1052	0.00059327	536.8005757645064	49.005	1.1217	48.823	48.558	49.68	-0.18206					59	28	3	0	0	0	0.027866	1	4991	4991		26.796	0	1	1047000	+		55757	36329	38912	38977	61132	61132					0.05362056922399461
NQYATWLNY	9	Unmodified	_NQYATWLNY_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.2774047851562	2	586.772188	1171.52982	-0.87102	-0.00051109	-1.253	-0.00073521	-2.124	-0.0012463	586.7711676570317	73.931	0.45983	73.666	73.368	73.828	-0.26479					27	12	3	0	0	0	0.024541	1	8731	8731		11.511	0	1	1484900	+		55758	26617	38913	38978	61133	61133					-0.04908035424773516
NQYGRGPF	8	Unmodified	_NQYGRGPF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.74566650390625	2	469.727584	937.440614	0.18724	8.7954E-05	3.9203	0.0018415	4.1075	0.0019294	469.72921385104564	19.978	1.1182	19.81	19.473	20.591	-0.16774					34	22	2	0	0	0	0.027866	1	464	464		28.254	0	1	44854			55759	6479	38914	38979	61134	61134					-0.030608255936272144
NQYNDYVE	8	Unmodified	_NQYNDYVE_					0	0	0			REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2277221679688	2	522.717079	1043.4196	-0.82901	-0.00043334	2.9827	0.0015591	2.1536	0.0011257	522.7185707949506	35.768	0.1142	35.563	35.467	35.581	-0.20518					4	2	2	0	0	0	0.027866	1	2734	2734		8.2313	0	1	99402	+		55760	28370	38915	38980	61135	61135					-0.10036880483812638
NQYRLIVNV	9	Unmodified	_NQYRLIVNV_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8197021484375	2	559.819473	1117.62439	-0.72616	-0.00040652	0.5209	0.00029161	-0.20526	-0.00011491	559.8194871283241	60.428	1.1908	60.428	60.143	61.334	0					89	31	5	0	0	0	0.039744	2	6946	6946;6958		133.81	55.428	1	4057700			55761	3172	38916	38981	61136;61137	61136					0.07028523117219265
NQYRLIVNV	9	Unmodified	_NQYRLIVNV_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.819091796875	2	559.819473	1117.62439	-0.86139	-0.00048222	0.5894	0.00032996	-0.27199	-0.00015227	559.819544248812	60.681	0.86706	60.468	60.157	61.024	-0.2134					83	22	5	0	0	0	0.028071	2	6960	6948;6960		143.11	48.698	1	4044200			55762	3172	38916	38981	61138;61139	61139					0.07028523117219265
NQYRLIVNV	9	Unmodified	_NQYRLIVNV_					0	0	0		MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant;ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8186645507812	2	559.819473	1117.62439	-1.9548	-0.0010943	1.8295	0.0010242	-0.12534	-7.0169E-05	559.820180267913	60.343	0.90488	60.422	60.088	60.993	0.078884					85	23	5	0	0	0	0.034181	2	6864	6851;6864		138.24	55.492	1	4444000			55763	3172	38916	38981	61140;61141	61141					0.07028523117219265
NRAEVRLCV	9	Unmodified	_NRAEVRLCV_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|88|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.288818359375	2	530.290025	1058.5655	-0.82167	-0.00043573	-2.1942	-0.0011636	-3.0159	-0.0015993	530.2886685901052	45.63	0.77491	45.63	45.246	46.021	0					59	22	4	0	0	0	0.64897	1	4472	4472		49.536	0	1	8452700	+		55764	36107	38917	38982	61142	61142					0.038557235512371335
NRAISAFKRA	10	Unmodified	_NRAISAFKRA_					0	0	0			REV__ENSG00000180720|ENST00000682254|CHRM4	REV__ENSG00000180720|ENST00000682254|CHRM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.330078125	2	567.330539	1132.64652	0.38005	0.00021561	-1.4224	-0.00080696	-1.0423	-0.00059135	567.3295892315691	102.64	0.75058	102.52	102.23	102.98	-0.1293					41	17	4	0	0	0	1.0122	1	12747	12747		44.377	3.599	1	839410	+		55765	27356	38918	38983	61143	61143					0.08550747585650242
NRATLQKL	8	Unmodified	_NRATLQKL_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.246337890625	2	472.287808	942.561064	0.21204	0.00010015	-0.0307	-1.4499E-05	0.18134	8.5646E-05	472.28761158101685	22.408	0.74205	22.408	22.198	22.94	0					33	15	3	0	0	0	0.027866	1	769	769		55.504	13.03	1	177340	+		55766	27732	38919	38984	61144	61144					0.08748582399982752
NRCLIKLFL	9	Unmodified	_NRCLIKLFL_					0	0	0		ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	ZNF638|p.K640Tfs*45|1|0.07|ENSG00000075292|chr2:71365629-71365630|-/CTACATCTTCT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.340087890625	2	560.338987	1118.66342	0.14489	8.1187E-05	1.8571	0.0010406	2.002	0.0011218	560.3398724189238	101.17	1.8281	101.17	100.81	102.63	-0.0054474					131	41	5	0	0	0	0.90698	1	12944	12944		31.955	0	1	15569000			55767	38205	38920	38985	61145	61145					0.10883532147249753
NRCLLKWL	8	Unmodified	_NRCLLKWL_					0	0	0		ENST00000464728.5_1_16:841010-841472:+|nuORF;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18	ENST00000464728.5_1_16:841010-841472:+|nuORF	ENST00000464728.5_1_16:841010-841472:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3040161132812	2	523.302404	1044.59026	0.13302	6.9608E-05	0.78222	0.00040934	0.91523	0.00047894	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.95417	1	11134	11134		44.531	3.9584	1	10615000			55768	4255	38921	38986	61146	61146					0.06974403424624143
NRCLLKWL	8	Unmodified	_NRCLLKWL_					0	0	0		ENST00000464728.5_1_16:841010-841472:+|nuORF;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18	ENST00000464728.5_1_16:841010-841472:+|nuORF	ENST00000464728.5_1_16:841010-841472:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3033447265625	2	523.302404	1044.59026	0.47324	0.00024765	1.4271	0.00074683	1.9004	0.00099447	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	1.0133	1	10599	10599		35.201	1.6851	1	13836000			55769	4255	38921	38986	61147	61147					0.06974403424624143
NRCPEACPSP	10	Unmodified	_NRCPEACPSP_					0	0	0		ENST00000291416.9_1_1:33611549-33612008:-|nuORF	ENST00000291416.9_1_1:33611549-33612008:-|nuORF	ENST00000291416.9_1_1:33611549-33612008:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2948608398438	2	537.228776	1072.443	-0.73326	-0.00039393	2.5995	0.0013965	1.8662	0.0010026	537.2295796659009	56.446	0.29348	56.446	56.241	56.535	0					10	7	2	0	0	0	0.03519	1	6277	6277		87.696	0	1	78469			55770	11796	38922	38987	61148	61148					-0.09032481242502399
NRCSLRRV	8	Unmodified	_NRCSLRRV_					0	0	0			REV__nc|ENSG00000113448|Q08499-11|PDE4D	REV__nc|ENSG00000113448|Q08499-11|PDE4D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.284423828125	2	502.282534	1002.55052	1.0231	0.00051386	2.0899	0.0010497	3.1129	0.0015636	502.2834960739512	97.685	0.88074	97.562	97.107	97.988	-0.12368					61	20	4	0	0	0	0.83003	1	12092	12092		56.721	1.2168	1	3002100	+		55771	36575	38923	38988	61149	61149					0.04934276473920818
NRDQDCGELTP	11	Unmodified	_NRDQDCGELTP_					0	0	0			REV__ENST00000449740.6_1_8:82593790-82598187:-|nuORF	REV__ENST00000449740.6_1_8:82593790-82598187:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8916015625	3	416.515548	1246.52481	-0.94631	-0.00039415	2.218	0.00092382	1.2717	0.00052966	416.51645222874134	33.649	0.4752	33.483	33.236	33.711	-0.16565					19	11	2	0	0	0	0.02476	1	2385	2385		38.714	0	1	188140	+		55772	32685	38924	38989	61150	61150					-0.0885870734969103
NRDSRARV	8	Unmodified	_NRDSRARV_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.77691650390625	2	487.267939	972.521324	-0.81817	-0.00039867	-2.1726	-0.0010586	-2.9908	-0.0014573	487.2682522159887	37.551	0.49101	37.488	37.305	37.796	-0.063385					26	13	3	0	0	0	0.027866	1	3099	3099		51.335	0	1	679520			55773	3583	38925	38990	61151	61151					0.03396455449274072
NREEEMYTVK	10	Unmodified	_NREEEMYTVK_					0	0	0			REV__ENSG00000170606|ENST00000304858|HSPA4	REV__ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.5484924316406	3	433.539693	1297.59725	-0.93059	-0.00040345	-3.4743	-0.0015063	-4.4049	-0.0019097	433.538086331714	24.333	0.40006	24.286	24.133	24.533	-0.047148					13	8	2	0	0	0	0.03519	1	1061	1061		25.126	3.3456	1	48671	+		55774	26489	38926	38991	61152	61152					-0.0396437327615331
NREEQLARCL	10	Unmodified	_NREEQLARCL_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.7555236816406	3	411.211911	1230.6139	0.02205	9.067E-06	-2.679	-0.0011016	-2.6569	-0.0010926	411.21062018600026	37.635	0.53263	37.442	37.229	37.761	-0.193					31	13	3	0	0	0	0.03519	1	3036	3036		20.03	10.384	1	312110	+		55775	25755	38927	38992	61153	61153					0.007821724004998032
NREPNLVL	8	Unmodified	_NREPNLVL_					0	0	0			REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7723388671875	2	477.771991	953.529429	-0.11572	-5.5286E-05	-0.9542	-0.00045589	-1.0699	-0.00051118	477.77176663704483	44.796	1.2979	44.833	44.241	45.539	0.0369					108	37	5	0	0	0	0.87148	1	4234	4234		53.351	2.016	1	13985000	+		55776	35315	38928	38993	61154	61154					0.05080589646024691
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.291748046875	2	509.277441	1016.54033	0.17531	8.9283E-05	0.82112	0.00041818	0.99643	0.00050746	509.277576112999	53.217	0.64494	53.09	52.792	53.437	-0.12705					35	16	3	0	0	0	0.024337	1	5567	5567		49.536	10.283	1	1205900			55777	2913	38929	38994	61155	61155					0.032719920203248876
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.29315185546875	2	509.277441	1016.54033	-0.021532	-1.0966E-05	2.0145	0.0010259	1.993	0.001015	509.2776886692607	53.395	0.62958	53.136	52.882	53.512	-0.25838					44	16	4	0	0	0	0.024257	1	5599	5599		67.494	25.098	1	992250			55778	2913	38929	38994	61156	61156					0.032719920203248876
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.29290771484375	2	509.277441	1016.54033	-0.17992	-9.1631E-05	1.4178	0.00072205	1.2379	0.00063041	509.27773177643815	53.311	0.63262	53.121	52.831	53.463	-0.18982					43	16	4	0	0	0	0.023842	1	5575	5575		87.696	52.078	1	1180400			55779	2913	38929	38994	61157	61157					0.032719920203248876
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.277441	1016.54033	-0.4305	-0.00021924	0.61226	0.00031181	0.18176	9.2566E-05	509.2776434525961	53.251	0.6801	53.251	52.938	53.618	0	0.099616	-0.00013972	NaN	49.536	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2336600			55780	2913	38929	38994							0.032719920203248876
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.277441	1016.54033	-0.8258	-0.00042056	1.0607	0.0005402	0.23491	0.00011964	509.27785807026885	53.304	0.76595	53.157	52.873	53.639	-0.14723	0.0055279	0.00031705	NaN	49.536	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2082400			55781	2913	38929	38994							0.032719920203248876
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.277441	1016.54033	-0.39703	-0.0002022	0.4604	0.00023447	0.063368	3.2272E-05	509.2775709330902	53.058	0.68878	53.153	52.83	53.518	0.095669	0.0019589	-0.0002944	NaN	49.536	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2380100			55782	2913	38929	38994							0.032719920203248876
NRFQALLS	8	Unmodified	_NRFQALLS_					0	0	0			REV__nc|ENSG00000170365|Q15797-2|SMAD1	REV__nc|ENSG00000170365|Q15797-2|SMAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7785339355469	2	474.766709	947.518865	0.53217	0.00025266	0.093063	4.4183E-05	0.62523	0.00029684	474.76668686686395	24.532	1.0911	24.61	23.868	24.959	0.078346					56	23	4	0	0	0	0.027866	1	988	988		50.025	15.852	1	513140	+		55783	26460	38930	38995	61158	61158					0.04300606991614586
NRFQVLLS	8	Unmodified	_NRFQVLLS_					0	0	0			REV__ENSG00000113658|ENST00000545279|SMAD5	REV__ENSG00000113658|ENST00000545279|SMAD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7840881347656	2	488.782359	975.550165	-0.8946	-0.00043727	0.12686	6.2009E-05	-0.76774	-0.00037526	488.7823563953132	40.535	1.7231	40.558	39.807	41.53	0.023006					129	48	5	0	0	0	0.89627	1	3534	3534		51.335	1.3109	1	11637000	+		55784	22083	38931	38996	61159	61159					0.06141180025713311
NRGALGLLYT	10	Unmodified	_NRGALGLLYT_					0	0	0		ENSG00000153230|ENST00000283225|OR14K1	ENSG00000153230|ENST00000283225|OR14K1	ENSG00000153230|ENST00000283225|OR14K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7835693359375	2	539.306198	1076.59784	-1.2475	-0.00067277	0.32562	0.00017561	-0.92186	-0.00049716	539.3062157778342	29.353	0.44233	29.431	29.165	29.607	0.078344					16	10	2	0	0	0	0.03519	1	1728	1728		32.812	4.9302	1	156570			55785	6331	38932	38997	61160	61160					0.06260834225895451
NRGANLTK	8	Unmodified	_NRGANLTK_					0	0	0			REV__ENSG00000174123|ENST00000308973|TLR10	REV__ENSG00000174123|ENST00000308973|TLR10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.7637634277344	2	437.248683	872.482814	-0.54607	-0.00023877	2.0418	0.00089277	1.4957	0.000654	437.25089452822056	27.07	0.71308	26.827	26.45	27.163	-0.24217					28	16	3	0	0	0	0.027866	1	1483	1483		16.473	0	1	132020	+		55786	26833	38933	38998	61161	61161					0.04147149814752993
NRGLLLSVM	9	Unmodified	_NRGLLLSVM_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.79083251953125	2	501.791869	1001.56919	0.054249	2.7222E-05	-2.5855	-0.0012974	-2.5313	-0.0012702	501.7905292818232	86.845	0.63228	86.8	86.51	87.142	-0.045105					28	14	2	0	0	0	0.75397	1	10903	10903		42.396	11.892	1	2076600	+		55787	24756;36782	38934	38999	61162	61162					0.06846393325110967
NRGRLIGG	8	Unmodified	_NRGRLIGG_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2;ENST00000520779.1_1_8:2088796-2113099:+|nuORF	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	421.7518615722656	2	421.751393	841.488233	0.25014	0.0001055	0.40924	0.0001726	0.65938	0.00027809	421.75148543247883	89.78	1.1148	89.758	89.409	90.524	-0.021645					56	26	3	0	0	0	1.0572	1	11317	11317		28.254	0	1	999390			55788	1040	38935	39000	61163	61163					0.06114873397245901
NRGRSLGR	8	Unmodified	_NRGRSLGR_					0	0	0			REV__ENST00000337386.9_2_2:191514644-191520728:+|nuORF	REV__ENST00000337386.9_2_2:191514644-191520728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.23773193359375	2	458.265199	914.515845	-0.57032	-0.00026136	3.3812	0.0015495	2.8109	0.0012881	458.2665649371849	35.778	0.49853	35.778	35.531	36.029	0					20	12	2	0	0	0	0.027866	1	2766	2766		7.1934	0	1	531880	+		55789	30564	38936	39001	61164	61164					0.05516776657475475
NRHAGRLHL	9	Unmodified	_NRHAGRLHL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3168334960938	2	537.307398	1072.60024	-1.4927	-0.00080202	4.2866	0.0023032	2.7939	0.0015012	537.3094932803104	20.965	0.74186	20.752	20.425	21.167	-0.2128					31	14	3	0	0	0	0.024354	1	599	599		38.806	12.113	1	200510			55790	10420	38937	39002	61165	61165					0.06684727474225838
NRHFIVPAS	9	Unmodified	_NRHFIVPAS_					0	0	0		ENSG00000166582|ENST00000299736|CENPV;nc|ENSG00000166582|Q7Z7K6|CENPV;nc|ENSG00000166582|Q7Z7K6-2|CENPV;ENST00000476243.5_1_17:16246133-16252046:-|nuORF	ENSG00000166582|ENST00000299736|CENPV	ENSG00000166582|ENST00000299736|CENPV	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.8213500976562	2	520.785433	1039.55631	0.068236	3.5536E-05	-1.9953	-0.0010391	-1.927	-0.0010036	520.7843463021497	100.36	0.45348	100.36	100.09	100.55	-0.0050888					15	11	2	0	0	0	0.023817	1	12767	12767		60.972	0	1	69964			55791	7586	38938	39003	61166	61166					0.0381169825723191
NRHKLSSGLLP	11	Unmodified	_NRHKLSSGLLP_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3563232421875	2	611.356754	1220.69895	-1.352	-0.00082658	0.3803	0.0002325	-0.97175	-0.00059408	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.0075	1	11944	11944		35.152	3.6222	1	11699000			55792	1396	38939	39004	61167	61167					0.09743285928607293
NRHSPSGIY	9	Unmodified	_NRHSPSGIY_					0	0	0		nc|ENSG00000138769|Q92772|CDKL2;ENSG00000138769|ENST00000307465|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7579956054688	2	515.756872	1029.49919	0.041136	2.1216E-05	2.7695	0.0014284	2.8107	0.0014496	515.7581655466149	73.985	2.0156	73.72	73.178	75.193	-0.26479					117	50	4	0	0	0	0.25032	1	8762	8762		82.305	5.4584	1	16703000			55793	18325	38940	39005	61168	61168					-0.014377690191167858
NRIAETHSK	9	Unmodified	_NRIAETHSK_					0	0	0		nc|ENSG00000119640|P07311-2|ACYP1	nc|ENSG00000119640|P07311-2|ACYP1	nc|ENSG00000119640|P07311-2|ACYP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2825317382812	2	528.283254	1054.55196	-1.2375	-0.00065372	0.36907	0.00019497	-0.86838	-0.00045875	528.2834566473409	24.11	0.97009	24.063	23.699	24.669	-0.047148					60	21	4	0	0	0	0.59099	1	1029	1029		53.351	10.877	1	3096700			55794	18211	38941	39006	61169	61169					0.026861890436521207
NRIFVLKV	8	Unmodified	_NRIFVLKV_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.3008117675781	2	494.818744	987.622936	-0.279	-0.00013805	-2.7997	-0.0013853	-3.0787	-0.0015234	494.81713969105675	96.236	0.49974	96.08	95.923	96.423	-0.15646					18	11	2	0	0	0	0.027866	1	11858	11858		20.482	4.0087	1	85830	+		55795	23325	38942	39007	61170	61170					0.12862933819133104
NRIGCLTSETF	11	Unmodified	_NRIGCLTSETF_					0	0	0		nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-3|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.1957092285156	3	414.204534	1239.59177	0.077718	3.2191E-05	-0.85411	-0.00035378	-0.77639	-0.00032159	414.5379504062933	42.055	0.67118	41.825	41.544	42.216	-0.2303					23	18	2	0	0	0	0.024735	1	3793	3793		27.644	0	1	326100			55796	954	38943	39008	61171	61171					-0.01844052067940538
NRIGKMKLRQL	11	Unmodified	_NRIGKMKLRQL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.94830322265625	3	452.946729	1355.81836	1.0628	0.00048139	2.9704	0.0013454	4.0332	0.0018268	452.94795921706185	106.19	0.77414	106.19	105.9	106.68	0					72	28	4	0	0	0	1.0371	1	13626	13626		28.577	2.5133	1	1126400	+		55797	20599	38944	39009	61172	61172					0.1546815628166769
NRIGKMKLRQL	11	Unmodified	_NRIGKMKLRQL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.948486328125	3	452.946729	1355.81836	0.24421	0.00011061	3.6188	0.0016391	3.8631	0.0017498	452.94824343813883	106.29	0.5282	106.16	105.9	106.43	-0.1238					65	22	4	0	0	0	1.0371	2	13228	13228;13235		28.577	6.0151	1	927680	+		55798	20599	38944	39009	61173;61174	61173					0.1546815628166769
NRIGKMKLRQL	11	Unmodified	_NRIGKMKLRQL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	452.946729	1355.81836	0.27396	0.00012409	3.4549	0.0015649	3.7289	0.001689	453.28256294801605	106.14	0.52415	106.14	105.92	106.44	-0.0013123	-0.061765	-0.00010173	NaN	28.577	50	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825130	+		55799	20599	38944	39009							0.1546815628166769
NRIGKMKLRQL	11	Unmodified	_NRIGKMKLRQL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	452.946729	1355.81836	0.23148	0.00010485	4.06	0.001839	4.2915	0.0019438	452.9483495344071	106.26	0.48707	106.26	106.02	106.51	0.00014496	0.05613	0.00072046	NaN	28.577	56	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595160	+		55800	20599	38944	39009							0.1546815628166769
NRIGKMKLRQL	11	Unmodified	_NRIGKMKLRQL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	452.946729	1355.81836	-1.0682	-0.00048386	5.1742	0.0023436	4.106	0.0018598	452.94885652990075	106.36	0.43476	106.23	106.02	106.46	-0.13279	0.022853	0.0022345	NaN	28.577	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335490	+		55801	20599	38944	39009							0.1546815628166769
NRIGKMKLRQL	11	Unmodified	_NRIGKMKLRQL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	452.946729	1355.81836	0.55495	0.00025136	3.62	0.0016397	4.175	0.001891	452.94807459133045	106.41	0.72534	106.25	105.71	106.44	-0.16132	0.04047	0.00012256	NaN	28.577	76	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517470	+		55802	20599	38944	39009							0.1546815628166769
NRIPVISLN	9	Unmodified	_NRIPVISLN_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3081665039062	2	513.308741	1024.60293	-0.81778	-0.00041977	0.034693	1.7808E-05	-0.78309	-0.00040197	513.3087525472763	54.497	1.1779	54.497	54.249	55.427	0					90	33	5	0	0	0	0.37611	1	5967	5967		67.494	1.0644	1	7591300			55803	186	38945	39010	61175	61175					0.09161138088529697
NRIQAAFREPQ	11	Unmodified	_NRIQAAFREPQ_					0	0	0		ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.22015380859375	3	443.905587	1328.69493	-0.89009	-0.00039511	0.59204	0.00026281	-0.29805	-0.0001323	443.9059064241015	26.025	0.2486	25.862	25.674	25.922	-0.16331					11	6	2	0	0	0	0.024739	1	1267	1267		17.167	0	1	222420			55804	14295	38946	39011	61176	61176					0.043731964348808106
NRIQIPND	8	Unmodified	_NRIQIPND_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.28778076171875	2	485.259248	968.503943	-0.38343	-0.00018606	0.41526	0.00020151	0.031823	1.5442E-05	485.2591907430218	41.896	1.2401	41.764	41.18	42.42	-0.13219					71	35	3	0	0	0	0.027866	1	3899	3899		45.952	27.628	1	5154900			55805	7729	38947	39012	61177	61177					0.018431151236086407
NRKAGAPVG	9	Unmodified	_NRKAGAPVG_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2516174316406	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	0.85941	2	9635	9635;9672		35.201	3.2459	1	1708300	+		55806	29117;37005	38948	39013	61178;61179	61178					0.04839453677379879
NRKAGAPVG	9	Unmodified	_NRKAGAPVG_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2512512207031	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	0.72268	6	9624	9624;9655;9724;9761;9840;9887		44.531	14.027	1	1610700	+		55807	29117;37005	38948	39013	61180;61181;61182;61183;61184;61185	61180					0.04839453677379879
NRKAGAPVG	9	Unmodified	_NRKAGAPVG_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.25164794921875	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	0.85941	1	9565	9565		35.201	4.6971	1	1590300	+		55808	29117;37005	38948	39013	61186	61186					0.04839453677379879
NRKAGAPVG	9	Unmodified	_NRKAGAPVG_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25146484375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	0.96121	1	9464	9464		28.254	0.37203	1	2257900	+		55809	29117;37005	38948	39013	61187	61187					0.04839453677379879
NRKAGAPVG	9	Unmodified	_NRKAGAPVG_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2515869140625	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	0.85941	2	9635	9502;9635		35.201	4.6971	1	2292300	+		55810	29117;37005	38948	39013	61188;61189	61189					0.04839453677379879
NRKAGAPVG	9	Unmodified	_NRKAGAPVG_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S;REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2516174316406	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	0.85941	4	9326	9326;9336;9434;9558		35.201	6.7195	1	1872200	+		55811	29117;37005	38948	39013	61190;61191;61192;61193	61190					0.04839453677379879
NRKDLVKT	8	Unmodified	_NRKDLVKT_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.29351806640625	2	487.293091	972.571629	-0.66256	-0.00032286	-0.075922	-3.6996E-05	-0.73848	-0.00035986	487.2929083828136	89.879	1.2819	89.879	89.605	90.887	0					77	30	4	0	0	0	1.0106	1	11381	11381		35.618	0	1	3154500			55812	1711	38949	39014	61194	61194					0.08424565054417599
NRKFLLSTS	9	Unmodified	_NRKFLLSTS_					0	0	0			REV__ENST00000479950.5_1_6:41034694-41034808:-|nuORF	REV__ENST00000479950.5_1_6:41034694-41034808:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3209838867188	2	533.306198	1064.59784	-0.43059	-0.00022964	-0.17396	-9.2773E-05	-0.60455	-0.00032241	533.3059593289406	30.031	0.71682	29.881	29.584	30.301	-0.14952					45	16	4	0	0	0	0.024523	1	1883	1883		37.159	3.6435	1	985870	+		55813	33412	38950	39015	61195	61195					0.06812834225888764
NRKGQVPA	8	Unmodified	_NRKGQVPA_					0	0	0		ENSG00000105270|ENST00000360535|CLIP3	ENSG00000105270|ENST00000360535|CLIP3	ENSG00000105270|ENST00000360535|CLIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2513122558594	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0572	1	9471	9471		28.254	1.4582	1	1872200			55814	2654	38951	39016	61196	61196					0.048394536773685104
NRKKNDIS	8	Unmodified	_NRKKNDIS_					0	0	0			REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2500305175781	2	487.772522	973.530492	-0.31171	-0.00015204	-2.7921	-0.0013619	-3.1038	-0.0015139	487.77062268704015	33.607	1.1474	33.376	32.916	34.063	-0.23107					36	28	2	0	0	0	0.027866	1	2404	2404		45.952	10.334	1	170040	+		55815	27697	38952	39017	61197	61197					0.042668040149465014
NRKTLPGK	8	Unmodified	_NRKTLPGK_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2801818847656	2	457.282526	912.550499	0.57639	0.00026357	0.43684	0.00019976	1.0132	0.00046333	457.28272813357466	100.63	0.55222	100.63	100.38	100.93	-0.0054474					23	13	2	0	0	0	1.0574	1	12787	12787		27.882	1.1893	1	269240	+		55816	27902	38953	39018	61198	61198					0.09072599745559273
NRKTLPGK	8	Unmodified	_NRKTLPGK_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.282526	912.550499	0.51195	0.0002341	0.2384	0.00010902	0.75034	0.00034312	457.28267498842985	100.56	0.51093	100.56	100.31	100.82	0	-0.01575	-7.2778E-05	NaN	27.882	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242070	+		55817	27902	38953	39018							0.09072599745559273
NRKTLPGK	8	Unmodified	_NRKTLPGK_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.282526	912.550499	0.013076	5.9794E-06	0.59537	0.00027225	0.60845	0.00027823	457.28275444789733	100.57	0.61958	100.58	100.25	100.87	0.010109	0.0033585	0.0002537	NaN	27.882	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338370	+		55818	27902	38953	39018							0.09072599745559273
NRKTLPGK	8	Unmodified	_NRKTLPGK_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	457.282526	912.550499	0.57639	0.00026357	0.43684	0.00019976	1.0132	0.00046333	457.28272813357466	100.63	0.55222	100.63	100.38	100.93	-0.0054474	0.05442	0.00010871	NaN	27.882	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269240	+		55819	27902	38953	39018							0.09072599745559273
NRKTLPGK	8	Unmodified	_NRKTLPGK_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.282526	912.550499	0.63977	0.00029256	-0.014173	-6.481E-06	0.6256	0.00028607	457.2825609748198	100.7	0.49595	100.57	100.23	100.73	-0.13364	-0.0042174	-0.00030377	NaN	27.882	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151270	+		55820	27902	38953	39018							0.09072599745559273
NRKTLPGK	8	Unmodified	_NRKTLPGK_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.282526	912.550499	0.52786	0.00024138	0.43544	0.00019912	0.96329	0.0004405	457.2828332416332	100.66	0.36186	100.53	100.27	100.63	-0.12504	-0.037811	0.00010743	NaN	27.882	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158350	+		55821	27902	38953	39018							0.09072599745559273
NRLFHTSLT	9	Unmodified	_NRLFHTSLT_					0	0	0		ENST00000477916.5_1_1:23919074-23919134:+|nuORF	ENST00000477916.5_1_1:23919074-23919134:+|nuORF	ENST00000477916.5_1_1:23919074-23919134:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8010864257812	2	544.795998	1087.57744	-1.0341	-0.00056337	-1.021	-0.00055624	-2.0551	-0.0011196	545.2971728948214	56.689	0.80898	56.786	56.359	57.168	0.097893					34	22	2	0	0	0	0.024319	1	6254	6254		39.253	0	1	332900			55822	15121	38954	39019	61199	61199					0.03715663566094918
NRLGRAFIE	9	Unmodified	_NRLGRAFIE_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3272094726562	2	538.30399	1074.59343	-0.11142	-5.998E-05	1.0195	0.00054881	0.9081	0.00048883	538.3031775410211	99.622	0.47151	99.622	99.358	99.829	0					19	10	2	0	0	0	0.024381	1	12701	12701		37.159	0	1	101940			55823	3717	38955	39020	61200	61200					0.05911369802993249
NRLIEKAHN	9	Unmodified	_NRLIEKAHN_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3265380859375	2	547.806897	1093.59924	-0.29022	-0.00015899	3.4878	0.0019106	3.1976	0.0017517	547.8088397603361	41.419	0.63711	41.419	41.051	41.688	0					40	17	4	0	0	0	0.022832	1	3691	3691		93.195	0	1	863750	+		55824	19108	38956	39021	61201	61201					0.056184683146511816
NRLISSVVQHL	11	Unmodified	_NRLISSVVQHL_					0	0	0			REV__nc|ENSG00000115266|O95996-3|APC2	REV__nc|ENSG00000115266|O95996-3|APC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3688354492188	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.99553	1	11799	11799		37.812	3.8899	1	9528000	+		55825	22184	38957	39022	61202	61202					0.10339555100085818
NRLKKLEKDS	10	Unmodified	_NRLKKLEKDS_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.8587341308594	3	410.910338	1229.70918	-0.040363	-1.6586E-05	-1.26	-0.00051776	-1.3004	-0.00053435	411.2441254957243	56.573	0.51452	56.405	56.082	56.597	-0.1672					19	12	2	0	0	0	0.03519	1	6090	6090		29.551	19.905	1	134680	+		55826	25703	38958	39023	61203	61203					0.10351848863183477
NRLKKLEKDS	10	Unmodified	_NRLKKLEKDS_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	410.910338	1229.70918	0.45832	0.00018833	-2.3636	-0.00097123	-1.9053	-0.0007829	410.90914751559154	56.597	0.38806	56.395	56.132	56.52	-0.20209	0.032171	-0.00056064	NaN	17.833	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125330	+		55827	25703	38958	39023							0.10351848863183477
NRLKKLEKDS	10	Unmodified	_NRLKKLEKDS_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	410.910338	1229.70918	0.15026	6.1745E-05	-1.9655	-0.00080765	-1.8152	-0.0007459	410.9094960732671	56.512	0.39571	56.288	56.109	56.504	-0.2248	-0.074933	-6.9886E-05	NaN	17.833	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154960	+		55828	25703	38958	39023							0.10351848863183477
NRLMVQWF	8	Unmodified	_NRLMVQWF_					0	0	0			REV__ENSG00000169255|ENST00000320474|B3GALNT1	REV__ENSG00000169255|ENST00000320474|B3GALNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.823974609375	2	547.284211	1092.55387	-0.32399	-0.00017731	-2.7102	-0.0014833	-3.0342	-0.0016606	547.2830611032737	41.744	0.70299	41.621	41.15	41.853	-0.12299					23	18	2	0	0	0	0.027866	1	3655	3655		35.201	6.0512	1	196970	+		55829	26345	38959	39024	61204	61204					0.011295265278931765
NRLPLAPLL	9	Unmodified	_NRLPLAPLL_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.232177734375	2	503.824027	1005.6335	-0.91984	-0.00046344	0.44139	0.00022238	-0.47846	-0.00024106	503.82406301515886	44.966	0.39614	44.755	44.514	44.91	-0.21109					13	9	2	0	0	0	0.024535	1	4192	4192		33.516	1.5607	1	76562	+		55830	21011	38960	39025	61205	61205					0.13090916473549896
NRLQRRRA	8	Unmodified	_NRLQRRRA_					0	0	0		ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.558349609375	2	535.326122	1068.63769	-1.3444	-0.0007197	3.6471	0.0019524	2.3026	0.0012327	535.3280508083055	35.79	0.6038	35.79	35.492	36.096	0					41	15	4	0	0	0	0.027866	1	2742	2742		12.207	9.0476	1	1304800			55831	9425	38961	39026	61206	61206					0.10611818739835144
NRLQTRARLD	10	Unmodified	_NRLQTRARLD_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.9057922363281	3	414.905698	1241.69527	-0.045225	-1.8764E-05	-0.10712	-4.4445E-05	-0.15235	-6.3209E-05	414.9057411520974	21.247	1.3484	21.157	20.766	22.115	-0.090094					99	27	6	0	0	0	1.1081	1	658	658		31.634	0	1	3818100	+		55832	28535	38962	39027	61207	61207					0.08408616154724768
NRLRNKHLI	9	Unmodified	_NRLRNKHLI_					0	0	0			REV__ENSG00000198752|ENST00000361246|CDC42BPB	REV__ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	583.2918090820312	2	582.359631	1162.70471	0.36706	0.00021376	1.6637	0.00096888	2.0308	0.0011826	582.3604679090007	71.44	1.2429	71.451	70.636	71.879	0.010735					69	31	4	0	0	0	0.024541	1	8591	8591		17.365	0	1	1375500	+		55833	28463	38963	39028	61208	61208					0.12986429230932117
NRLRPGAF	8	Unmodified	_NRLRPGAF_					0	0	0			REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF	REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.23675537109375	2	465.767043	929.519533	0.48756	0.00022709	-1.5553	-0.00072439	-1.0677	-0.0004973	465.7660059661446	28.281	0.49451	28.362	28.08	28.574	0.080811					21	11	3	0	0	0	0.027866	1	1603	1603		21.702	7.5652	1	100360	+		55834	25468	38964	39029	61209	61209					0.051954464313212156
NRLRPVAS	8	Unmodified	_NRLRPVAS_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3;ZC3H3|p.G585E|1|0.37|ENSG00000014164|chr8:143475547-143475547|C/T|missense_variant	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.7721252441406	2	456.772326	911.530098	-0.2547	-0.00011634	-0.65491	-0.00029914	-0.90961	-0.00041548	456.7722485298994	89.203	2.0073	89.075	88.281	90.288	-0.12774					107	47	4	0	0	0	0.97924	1	10937	10937		40.573	0	1	3333900			55835	923	38965	39030	61210	61210					0.07079429085740685
NRLRRPKIT	9	Unmodified	_NRLRRPKIT_					0	0	0			REV__ENST00000476243.5_1_17:16246230-16247960:-|nuORF	REV__ENST00000476243.5_1_17:16246230-16247960:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3655395507812	2	577.367456	1152.72036	0.46361	0.00026767	-1.9934	-0.0011509	-1.5298	-0.00088328	577.3661806344381	101.22	0.81992	101.09	100.81	101.63	-0.13156					47	17	5	0	0	0	0.99229	1	12583	12583		21.96	1.9631	1	985230	+		55836	33306	38966	39031	61211	61211					0.15010715747962422
NRLSILDRLLH	11	Unmodified	_NRLSILDRLLH_					0	0	0		nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2;ENST00000484638.1_1_20:19915775-19951501:+|nuORF	nc|ENSG00000132669|Q8WYP3-2|RIN2	nc|ENSG00000132669|Q8WYP3-2|RIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2744445800781	3	450.605249	1348.79392	-0.17787	-8.0149E-05	1.6904	0.0007617	1.5125	0.00068155	450.94163733288104	92.312	0.19879	92.189	92.062	92.261	-0.12241					6	4	2	0	0	0	0.024851	1	11343	11343		14.086	1.6532	1	28101			55837	4635	38967	39032	61212	61212					0.13347219399793175
NRLSKGLQID	10	Unmodified	_NRLSKGLQID_					0	0	0		CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant;CYLD|p.E638Rfs*9|1|0.59|ENSG00000083799|chr16:50784411-50784412|-/A|frameshift_variant;CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant;CYLD|p.V180Cfs*23|1|0.71|ENSG00000083799|chr16:50751634-50751634|G/-|frameshift_variant;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;ENSG00000083799|ENST00000427738|CYLD;nc|ENSG00000083799|Q9NQC7-2|CYLD	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant;ENSG00000083799|ENST00000427738|CYLD	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2772216796875	2	572.327662	1142.64077	-0.20714	-0.00011855	-0.33822	-0.00019357	-0.54536	-0.00031213	572.3271412233142	25.992	0.35113	25.822	25.698	26.049	-0.17078					15	10	2	0	0	0	0.03519	1	1265	1265		31.53	9.5699	1	156980			55838	613;1758	38968	39033	61213	61213					0.07515604283344146
NRLSKGLQID	10	Unmodified	_NRLSKGLQID_					0	0	0		CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant;CYLD|p.E638Rfs*9|1|0.59|ENSG00000083799|chr16:50784411-50784412|-/A|frameshift_variant;CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant;CYLD|p.V180Cfs*23|1|0.71|ENSG00000083799|chr16:50751634-50751634|G/-|frameshift_variant;ENST00000563629.1_1_16:50783909-50820919:+|nuORF;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;ENSG00000083799|ENST00000427738|CYLD;nc|ENSG00000083799|Q9NQC7-2|CYLD	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant;ENSG00000083799|ENST00000427738|CYLD	CYLD|p.S361Lfs*47|1|0.53|ENSG00000083799|chr16:50777881-50777881|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	572.327662	1142.64077	-1.0254	-0.00058686	0.073283	4.1942E-05	-0.9521	-0.00054492	572.3276616560504	26.229	0.37648	26.065	25.894	26.271	-0.16331	0.12185	0.00012433	NaN	39.253	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111910			55839	613;1758	38968	39033							0.07515604283344146
NRLSVLLNL	9	Unmodified	_NRLSVLLNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MSMS	OPSCC_39_ClassI_Rep-3	3	521.3245239257812	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.455	1	49.529	49.029	50.029	0.074196								0	0	0	0.21285	1	5044	5044		74.255	3.4388	1				55840	10262	38969	39034	61214	61214					0.11553711122587629
NRLTPLILDLN	11	Unmodified	_NRLTPLILDLN_					0	0	0			REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8819580078125	2	641.379894	1280.74524	0.23338	0.00014968	2.9821	0.0019127	3.2155	0.0020624	642.3846813514313	105.75	0.57226	105.75	105.41	105.98	0.00014496					45	20	3	0	0	0	1.0022	1	13501	13501		36.318	3.5052	1	187890	+		55841	19074	38970	39035	61215	61215					0.11609306040054435
NRLTPLILDLN	11	Unmodified	_NRLTPLILDLN_					0	0	0			REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	641.379894	1280.74524	0.23338	0.00014968	2.9821	0.0019127	3.2155	0.0020624	642.3846813514313	105.75	0.57226	105.75	105.41	105.98	0.00014496	0.057022	4.5761E-05	NaN	36.318	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187890	+		55842	19074	38970	39035							0.11609306040054435
NRLYILITT	9	Unmodified	_NRLYILITT_					0	0	0			REV__ENST00000368891.9_1_10:124697547-124708177:-|nuORF	REV__ENST00000368891.9_1_10:124697547-124708177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8299560546875	2	553.832049	1105.64954	0.36825	0.00020395	-4.0996	-0.0022705	-3.7314	-0.0020666	553.8296512023196	87.117	2.5491	87.138	85.735	88.284	0.021255					196	60	4	0	0	0	0.80658	1	10910	10910		38.806	4.6336	1	1337200	+		55843	31071	38971	39036	61216	61216					0.10094577919812764
NRLYQAIQRAD	11	Unmodified	_NRLYQAIQRAD_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.78448486328125	3	449.909109	1346.7055	-0.75811	-0.00034108	2.3792	0.0010704	1.6211	0.00072933	449.91071161871605	28.721	0.5832	28.721	28.49	29.073	0					36	13	4	0	0	0	0.024734	1	1703	1703		34.087	20	1	84476			55844	2461	38972	39037	61217	61217					0.04601179089308971
NRMIRPVPRL	10	Unmodified	_NRMIRPVPRL_					0	0	0			REV__ENST00000548225.1_1_12:56604079-56607800:-|nuORF	REV__ENST00000548225.1_1_12:56604079-56607800:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.9203796386719	3	417.920403	1250.73938	-0.64665	-0.00027025	1.1615	0.00048539	0.5148	0.00021515	417.9208009757327	45.962	1.9586	45.81	45.343	47.302	-0.15156					136	54	3	0	0	0	1.1211	1	4491	4491		21.686	1.3707	1	3928600	+		55845	27433	38973	39038	61218	61218					0.1240392904737746
NRMMAVEQR	9	Unmodified	_NRMMAVEQR_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.7847900390625	2	567.778967	1133.54338	4.4734	0.0025399	1.2082	0.00068599	5.6816	0.0032259	567.7794900159628	17.493	0.69401	17.554	17.209	17.903	0.06036					54	20	4	0	0	0	0.94809	1	172	172		29.15	3.5755	1	200990	+		55846	36819	38974	39039	61219	61219					-0.018048241888209304
NRMSKSFDT	9	Unmodified	_NRMSKSFDT_					0	0	0		ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	ENSG00000138382|ENST00000260953|METTL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.2554321289062	2	543.255848	1084.49714	-1.7779	-0.00096585	1.4174	0.00077001	-0.3605	-0.00019584	543.2565286462312	29.866	1.3602	29.944	29.646	31.006	0.078344					72	32	5	0	0	0	0.6504	1	1814	1814		49.442	0	1	1691200			55847	5236	38975	39040	61220	61220					-0.041725658192717674
NRNERGEP	8	Unmodified	_NRNERGEP_					0	0	0		SLC2A1|p.E221Rfs*17|1|0.17|ENSG00000117394|chr1:42929892-42929893|-/TCGT|frameshift_variant	SLC2A1|p.E221Rfs*17|1|0.17|ENSG00000117394|chr1:42929892-42929893|-/TCGT|frameshift_variant	SLC2A1|p.E221Rfs*17|1|0.17|ENSG00000117394|chr1:42929892-42929893|-/TCGT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.27154541015625	2	486.236304	970.458055	-0.38329	-0.00018637	3.7461	0.0018215	3.3628	0.0016351	486.23810523440955	33.012	0.27818	32.846	32.76	33.038	-0.16565					11	6	2	0	0	0	0.027866	1	2303	2303		40.573	10.069	1	99363			55848	37882	38976	39041	61221	61221					-0.02835530058621316
NRPAREGR	8	Unmodified	_NRPAREGR_					0	0	0		ENST00000299633.6_1_15:83876623-83876737:-|nuORF	ENST00000299633.6_1_15:83876623-83876737:-|nuORF	ENST00000299633.6_1_15:83876623-83876737:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	478.26593017578125	2	478.262656	954.51076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.017	1	99.017	98.517	99.517	0								0	0	0	0.63389	1	12654	12654		45.952	5.1738	1				55849	11885	38977	39042	61222	61222					0.03168472794845911
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.7879028320312	2	576.787838	1151.56112	-1.1691	-0.00067433	1.0054	0.00057992	-0.16369	-9.4414E-05	576.7882907306156	63.247	0.94207	63.247	62.938	63.88	0					63	25	4	0	0	0	0.17845	3	7412	7388;7400;7412		93.143	37.639	1	5866700			55850	1175	38978	39043	61223;61224;61225	61225					-0.008594623906901688
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.78759765625	2	576.787838	1151.56112	-0.08727	-5.0336E-05	-0.025798	-1.488E-05	-0.11307	-6.5216E-05	576.7876354845178	63.512	0.66038	63.261	62.893	63.553	-0.25141					58	17	4	0	0	0	0.15366	2	7405	7394;7405		98.629	26.752	1	4768700			55851	1175	38978	39043	61226;61227	61227					-0.008594623906901688
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.7864379882812	2	576.787838	1151.56112	0.95702	0.000552	-1.3574	-0.00078292	-0.40037	-0.00023093	576.786927567547	63.273	0.97387	63.327	62.974	63.947	0.054104					75	26	4	0	0	0	0.16638	3	7321	7308;7321;7335		95.815	37.585	1	4494700			55852	1175	38978	39043	61228;61229;61230	61229					-0.008594623906901688
NRPFTILN	8	Unmodified	_NRPFTILN_					0	0	0			REV__ACOT12|p.I303N|1|0.08|ENSG00000172497|chr5:81344907-81344907|A/T|missense_variant	REV__ACOT12|p.I303N|1|0.08|ENSG00000172497|chr5:81344907-81344907|A/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	487.77264404296875	2	487.774534	973.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.795	1	85.795	85.295	86.295	0								0	0	0	0.33041	1	10769	10769		82.305	8.05	1		+		55853	19054	38979	39044	61231	61231					0.04668893508664951
NRPKKSKTKK	10	Unmodified	_NRPKKSKTKK_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.88763427734375	3	405.594573	1213.76189	1.4854	0.00060245	-0.2174	-8.8174E-05	1.268	0.00051428	405.59438155167595	17.956	0.39494	17.801	17.657	18.052	-0.15496					10	7	2	0	0	0	0.03519	1	232	232		26.063	8.5954	1	22330			55854	1362	38980	39045	61232	61232					0.16355851716616598
NRPKKSKTKK	10	Unmodified	_NRPKKSKTKK_					0	0	0		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.8877258300781	3	405.594573	1213.76189	0.65889	0.00026724	0.53092	0.00021534	1.1898	0.00048258	405.59486340611767	18.006	0.74604	17.799	17.364	18.11	-0.20669					10	6	2	0	0	0	0.03519	1	207	207		29.551	5.0316	1	22861			55855	1362	38980	39045	61233	61233					0.16355851716616598
NRPKVQLKH	9	Unmodified	_NRPKVQLKH_					0	0	0			REV__ENSG00000196872|ENST00000397899|CRACDL	REV__ENSG00000196872|ENST00000397899|CRACDL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3400268554688	2	560.340907	1118.66726	0.38121	0.00021361	-1.7774	-0.00099595	-1.3962	-0.00078234	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	0.90698	1	12598	12598		31.955	0.42505	1	13153000	+		55856	28232	38981	39046	61234	61234					0.11267337965318802
NRPLTSILSA	10	Unmodified	_NRPLTSILSA_					0	0	0			REV__ENST00000275605.7_1_7:56119039-56119264:-|nuORF	REV__ENST00000275605.7_1_7:56119039-56119264:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.311767578125	2	536.31148	1070.60841	0.59137	0.00031716	-0.25105	-0.00013464	0.34032	0.00018252	536.3113371043105	97.078	1.1595	96.954	96.572	97.732	-0.12368					69	25	5	0	0	0	1.1286	1	12011	12011		25.574	0	1	563610	+		55857	29846	38982	39047	61235	61235					0.07592816880332975
NRPLTSPPSYL	11	Unmodified	_NRPLTSPPSYL_					0	0	0			REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D	REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.55938720703125	3	415.559305	1243.65609	3.4491	0.0014333	-2.6724	-0.0011105	0.77667	0.00032275	415.5580995348037	18.898	1.0836	18.962	18.649	19.732	0.063307					40	21	3	0	0	0	1.0592	1	294	294		22.562	2.5311	1	127060	+		55858	23794	38983	39048	61236	61236					0.04400471080521129
NRPRRILN	8	Unmodified	_NRPRRILN_					0	0	0		nc|ENSG00000188107|Q5T1H1-4|EYS	nc|ENSG00000188107|Q5T1H1-4|EYS	nc|ENSG00000188107|Q5T1H1-4|EYS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2420654296875	2	519.817599	1037.62064	0.052803	2.7448E-05	-1.0148	-0.0005275	-0.96197	-0.00050005	519.8174267799931	68.978	0.86016	68.747	68.48	69.34	-0.23048					32	20	2	0	0	0	0.027866	1	7986	7986		31.955	4.0726	1	153130			55859	18606	38984	39049	61237	61237					0.10333898134035735
NRQCPCSQR	9	Unmodified	_NRQCPCSQR_					0	0	0			REV__nc|ENSG00000074527|Q9HB63-3|NTN4	REV__nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.8402709960938	2	546.245292	1090.47603	0.65964	0.00036032	0.30853	0.00016853	0.96817	0.00052886	546.2465792337315	99.784	0.14062	99.659	99.539	99.679	-0.12458					5	3	2	0	0	0	0.024447	1	12373	12373		40.778	16.575	1	24205	+		55860	20526	38985	39050	61238	61238					-0.06558854399781922
NRQEEGYDT	9	Unmodified	_NRQEEGYDT_					0	0	0			REV__ENST00000487832.6_1_6:116892745-116895225:+|nuORF	REV__ENST00000487832.6_1_6:116892745-116895225:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.2689819335938	2	556.236167	1110.45778	0.015862	8.8232E-06	-4.3966	-0.0024455	-4.3807	-0.0024367	556.735329897973	64.367	0.11744	64.174	64.077	64.194	-0.19243					4	2	2	0	0	0	0.024477	1	7319	7319		27.882	1.1893	1	40329	+		55861	21949	38986	39051	61239	61239					-0.09302994569134171
NRQLGHII	8	Unmodified	_NRQLGHII_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	MSMS	OPSCC_39_ClassI_Rep-2	2	475.7814025878906	2	475.780151	949.545748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.94	1	101.95	101.45	102.45	0.0073471								0	0	0	0.97952	1	13021	13021		21.702	3.3779	1		+		55862	29178	38987	39052	61240	61240					0.06895715602797736
NRQMPSEV	8	Unmodified	_NRQMPSEV_					0	0	0			REV__ENST00000442383.1_1_20:42839777-42839900:+|nuORF	REV__ENST00000442383.1_1_20:42839777-42839900:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.28900146484375	2	480.732009	959.449465	0.90708	0.00043606	-0.46289	-0.00022252	0.4442	0.00021354	480.73160512477824	66.099	0.30898	66.099	65.875	66.184	0					9	7	2	0	0	0	0.027866	1	7831	7831		51.335	22.186	1	70596	+		55863	32560	38988	39053	61241	61241					-0.03188220019444543
NRQQLLIL	8	Unmodified	_NRQQLLIL_					0	0	0			REV__ENSG00000047578|ENST00000261588|KATNIP	REV__ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.3213806152344	2	499.311284	996.608014	-0.31638	-0.00015797	0.96268	0.00048067	0.6463	0.0003227	499.31187664235097	48.667	0.27625	48.667	48.448	48.724	0					10	7	2	0	0	0	0.027866	1	4985	4985		54.765	1.4132	1	74185	+		55864	20127	38989	39054	61242	61242					0.1095744195114321
NRQVLKLDT	9	Unmodified	_NRQVLKLDT_					0	0	0		ENSG00000129480|ENST00000310850|DTD2	ENSG00000129480|ENST00000310850|DTD2	ENSG00000129480|ENST00000310850|DTD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7732543945312	2	543.81693	1085.61931	-0.25958	-0.00014116	3.15	0.001713	2.8904	0.0015719	543.818608049096	74.295	0.41399	74.019	73.851	74.265	-0.27573					20	10	3	0	0	0	0.024427	1	8771	8771		34.173	0	1	765380			55865	4350	38990	39055	61243	61243					0.07992219254606425
NRQVPKGA	8	Unmodified	_NRQVPKGA_					0	0	0		ENST00000422660.5_1_13:51544186-51544219:+|nuORF	ENST00000422660.5_1_13:51544186-51544219:+|nuORF	ENST00000422660.5_1_13:51544186-51544219:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2515563964844	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.0572	1	9665	9665		28.254	2.8041	1	1590300			55866	14010	38991	39056	61244	61244					0.04839453677379879
NRRAQRMA	8	Unmodified	_NRRAQRMA_					0	0	0		ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;ENST00000473451.1_1_3:49950446-49967283:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29339599609375	2	501.772334	1001.53011	0.60881	0.00030548	0.35079	0.00017602	0.9596	0.0004815	501.77197630987916	77.972	0.16373	77.729	77.617	77.78	-0.24232					5	3	2	0	0	0	0.027866	1	9301	9301		35.201	9.7505	1	36436			55867	15338	38992	39057	61245	61245					0.029411058141022295
NRRAQRMA	8	Unmodified	_NRRAQRMA_					0	0	0		ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;ENST00000473451.1_1_3:49950446-49967283:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.772334	1001.53011	0.0090557	4.5439E-06	-0.82432	-0.00041362	-0.81527	-0.00040908	501.7721926109979	77.803	0.32861	77.803	77.672	78.001	0	0.011934	0.00031147	NaN	26.796	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76600			55868	15338	38992	39057							0.029411058141022295
NRRAQRMA	8	Unmodified	_NRRAQRMA_					0	0	0		ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;nc|ENSG00000164077|Q86VX9|MON1A;ENST00000473451.1_1_3:49950446-49967283:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	ENST00000486107.5_1_3:49947550-49967319:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.772334	1001.53011	0.6419	0.00032209	-3.3364	-0.0016741	-2.6945	-0.001352	502.27195036929874	78.042	0.45233	77.841	77.595	78.047	-0.20115	0.049656	-0.0022095	NaN	26.796	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82427			55869	15338	38992	39057							0.029411058141022295
NRRHAKAD	8	Unmodified	_NRRHAKAD_					0	0	0			REV__ENSG00000197818|ENST00000361573|SLC9A8	REV__ENSG00000197818|ENST00000361573|SLC9A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.259765625	2	484.262656	966.51076	-0.019978	-9.6748E-06	-2.649	-0.0012828	-2.6689	-0.0012925	484.25802662178376	27.327	1.0094	27.17	26.715	27.724	-0.15664					63	23	5	0	0	0	0.71833	1	1513	1513		65.803	5.5092	1	3021700	+		55870	28350	38993	39058	61246	61246					0.026164727948412292
NRRKEIKR	8	Unmodified	_NRRKEIKR_					0	0	0		nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	nc|ENSG00000147421|Q6NT76-2|HMBOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8089599609375	2	550.343981	1098.67341	-1.1042	-0.00060766	1.5541	0.0008553	0.44997	0.00024764	550.3460190994073	55.674	0.18762	55.518	55.348	55.535	-0.15656					5	4	2	0	0	0	0.027866	1	5981	5981		19.36	0	1	46155			55871	5964	38994	39059	61247	61247					0.1280185619684744
NRRLTRVF	8	Unmodified	_NRRLTRVF_					0	0	0		ENST00000272542.7_1_2:113420608-113420746:+|nuORF	ENST00000272542.7_1_2:113420608-113420746:+|nuORF	ENST00000272542.7_1_2:113420608-113420746:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.3189697265625	2	531.319974	1060.6254	-0.18565	-9.8638E-05	-1.398	-0.00074276	-1.5836	-0.0008414	531.3190902066726	93.825	1.15	93.677	93.26	94.41	-0.14771					88	26	4	0	0	0	0.99042	1	11534	11534		38.806	4.6336	1	3704000			55872	11655	38995	39060	61248	61248					0.09750782276796599
NRRLYWFRRPE	11	Unmodified	_NRRLYWFRRPE_					0	0	0		ENST00000408953.3_1_5:159826916-159827063:-|nuORF	ENST00000408953.3_1_5:159826916-159827063:-|nuORF	ENST00000408953.3_1_5:159826916-159827063:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2724609375	3	531.623414	1591.84841	-0.8029	-0.00042684	3.6756	0.001954	2.8727	0.0015272	531.62512498926	27.861	0.23505	27.857	27.731	27.966	-0.0042019					6	5	2	0	0	0	0.024895	1	1571	1571		4.8861	1.6748	1	29135			55873	13760	38996	39061	61249	61249					0.07616231271185825
NRRPDLEIY	9	Unmodified	_NRRPDLEIY_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.2647094726562	2	588.312012	1174.60947	-1.133	-0.00066657	-3.8501	-0.0022651	-4.9831	-0.0029316	588.3100354301503	66.258	0.38493	65.977	65.788	66.173	-0.28149					15	9	2	0	0	0	0.024313	1	7869	7869		51.193	29.233	1	99932			55874	1422	38997	39062	61250	61250					0.029150312492447483
NRRPDLEIY	9	Unmodified	_NRRPDLEIY_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	588.312012	1174.60947	-0.60109	-0.00035363	-3.7952	-0.0022328	-4.3963	-0.0025864	588.3093328597732	65.854	0.30527	65.854	65.721	66.026	0	-0.083039	0.00073508	NaN	51.193	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97726			55875	1422	38997	39062							0.029150312492447483
NRRPDLEIY	9	Unmodified	_NRRPDLEIY_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	588.312012	1174.60947	0.73856	0.00043451	-5.3884	-0.0031701	-4.6499	-0.0027356	588.3084516569776	65.951	0.30782	65.981	65.774	66.082	0.030106	0.043608	-0.0011395	NaN	51.193	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115830			55876	1422	38997	39062							0.029150312492447483
NRRRFLLD	8	Unmodified	_NRRRFLLD_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3164672851562	2	545.317432	1088.62031	-0.30487	-0.00016625	-1.2147	-0.00066239	-1.5196	-0.00082864	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.96719	1	10885	10885		42.474	0.078325	1	3635800			55877	1574	38998	39063	61251	61251					0.07954478414194455
NRRVGGRGPPR	11	Unmodified	_NRRVGGRGPPR_					0	0	0			REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.8579711914062	2	611.355411	1220.69627	-2.7989	-0.0017111	3.7224	0.0022757	0.92359	0.00056464	611.3575286656617	92.522	1.7327	92.379	91.617	93.35	-0.14356					150	40	4	0	0	0	0.98904	1	11464	11464		39.253	1.4413	1	4645400	+		55878	32980	38999	39064	61252	61252					0.09474875314322162
NRRVLIDL	8	Unmodified	_NRRVLIDL_					0	0	0		nc|ENSG00000142606|Q495T6-2|MMEL1;ENSG00000142606|ENST00000378412|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	nc|ENSG00000142606|Q495T6-2|MMEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7672119140625	2	499.808908	997.603263	-0.58032	-0.00029005	-1.0642	-0.0005319	-1.6445	-0.00082195	499.80854291790416	40.438	0.53395	40.461	40.162	40.696	0.023003					32	14	3	0	0	0	0.027866	1	3528	3528		30.504	5.0535	1	380290			55879	5573	39000	39065	61253	61253					0.10436557808372982
NRRYRVVL	8	Unmodified	_NRRYRVVL_					0	0	0			REV__ENSG00000203926|ENST00000370518|SPANXA2	REV__ENSG00000203926|ENST00000370518|SPANXA2	MSMS	OPSCC_39_ClassI_Rep-3	3	538.3255004882812	2	538.327799	1074.64105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	100.99	100.49	101.49	-0.0054474								0	0	0	0.78881	1	12848	12848		35.201	7.3185	1		+		55880	28177	39001	39066	61254	61254					0.10671068793840277
NRSGKRGRP	9	Unmodified	_NRSGKRGRP_					0	0	0		nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.2985229492188	2	514.29703	1026.57951	0.55643	0.00028617	1.3665	0.00070278	1.9229	0.00098895	514.2974943917296	95.261	0.95751	95.138	94.684	95.642	-0.12251					58	21	4	0	0	0	0.96906	1	11777	11777		26.693	1.1189	1	1848500			55881	9080	39002	39067	61255	61255					0.0672813709456932
NRSKLCNIL	9	Unmodified	_NRSKLCNIL_					0	0	0		nc|ENSG00000186153|Q9NZC7-2|WWOX;ENST00000569332.5_1_16:78133625-79245690:+|nuORF;ENSG00000186153|ENST00000566780|WWOX	nc|ENSG00000186153|Q9NZC7-2|WWOX	nc|ENSG00000186153|Q9NZC7-2|WWOX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8014526367188	2	530.800226	1059.5859	0.32264	0.00017126	2.6299	0.001396	2.9526	0.0015672	530.8012604165011	101.11	0.89976	100.98	100.73	101.63	-0.13156					67	19	4	0	0	0	0.70156	1	12588	12588		45.972	5.3996	1	1070700			55882	9520	39003	39068	61256	61256					0.058488942110670905
NRSLSLLAL	9	Unmodified	_NRSLSLLAL_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7765197753906	2	493.803291	985.59203	-0.27464	-0.00013562	-0.2424	-0.0001197	-0.51704	-0.00025532	493.8029572378729	32.673	0.56324	32.515	32.323	32.886	-0.15772					22	13	2	0	0	0	0.024	1	2233	2233		76.847	32.73	1	163720	+		55883	25466	39004	39069	61257	61257					0.09865735714231505
NRSPFIRR	8	Unmodified	_NRSPFIRR_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3035888671875	2	523.304324	1044.5941	0.82974	0.00043421	-2.5359	-0.0013271	-1.7062	-0.00089285	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	1.0009	1	10313	10313		37.159	7.9891	1	3893600	+		55884	36756	39005	39070	61258	61258					0.0735820924271593
NRSQLVSN	8	Unmodified	_NRSQLVSN_					0	0	0			REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2678527832031	2	459.243598	916.472643	-0.050665	-2.3268E-05	1.993	0.00091529	1.9424	0.00089202	459.2435411088054	75.262	0.2747	75.018	74.878	75.153	-0.24455					9	6	2	0	0	0	0.027866	1	9175	9175		40.778	11.629	1	78707	+		55885	27841	39006	39071	61259	61259					0.011065420895192801
NRSSGLYVW	9	Unmodified	_NRSSGLYVW_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2567138671875	2	541.274898	1080.53524	-0.88742	-0.00048034	4.0315	0.0021821	3.1441	0.0017018	541.2788835425133	48.398	0.24642	48.212	48.157	48.403	-0.18684					8	6	2	0	0	0	0.023181	1	4823	4823		82.305	18.999	1	90566			55886	10406	39007	39072	61260	61260					-0.0018031184229130304
NRSTTLTKH	9	Unmodified	_NRSTTLTKH_					0	0	0		ENSG00000131127|ENST00000240499|ZNF141;ENSG00000186777|ENST00000419098|ZNF732	ENSG00000131127|ENST00000240499|ZNF141	ENSG00000131127|ENST00000240499|ZNF141	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2899169921875	2	529.291079	1056.56761	-1.2504	-0.0006618	1.2599	0.00066685	0.0095382	5.0485E-06	529.2916507360027	25.255	0.44401	25.22	24.948	25.392	-0.034395					17	10	2	0	0	0	0.024374	1	1150	1150		49.442	8.6634	1	130370			55887	4499	39008	39073	61261	61261					0.04158475560689112
NRSTTLTKH	9	Unmodified	_NRSTTLTKH_					0	0	0		ENSG00000131127|ENST00000240499|ZNF141;ENSG00000186777|ENST00000419098|ZNF732	ENSG00000131127|ENST00000240499|ZNF141	ENSG00000131127|ENST00000240499|ZNF141	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.291079	1056.56761	0.18926	0.00010017	-0.31479	-0.00016661	-0.12553	-6.644E-05	529.2906474145701	25.127	0.40809	25.207	25.05	25.459	0.08009	0.011548	-0.0014304	NaN	49.442	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111150			55888	4499	39008	39073							0.04158475560689112
NRSTTLTKH	9	Unmodified	_NRSTTLTKH_					0	0	0		ENSG00000131127|ENST00000240499|ZNF141;ENSG00000186777|ENST00000419098|ZNF732	ENSG00000131127|ENST00000240499|ZNF141	ENSG00000131127|ENST00000240499|ZNF141	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.291079	1056.56761	-0.52876	-0.00027987	1.465	0.0007754	0.93621	0.00049553	529.2918714514419	25.314	0.33515	25.143	24.912	25.247	-0.17078	-0.052193	0.00045358	NaN	49.442	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77525			55889	4499	39008	39073							0.04158475560689112
NRTEPSSI	8	Unmodified	_NRTEPSSI_					0	0	0			REV__ENST00000265085.9_1_5:173316102-173316159:+|nuORF	REV__ENST00000265085.9_1_5:173316102-173316159:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2301330566406	2	452.230156	902.445759	0.14346	6.4879E-05	-0.56213	-0.00025421	-0.41866	-0.00018933	452.2299426936562	26.846	1.153	26.846	26.573	27.726	0					47	29	2	0	0	0	0.42327	1	1393	1393		94.006	3.6366	1	6191600	+		55890	29734	39009	39074	61262	61262					-0.009365665216591879
NRTGGSAH	8	Unmodified	_NRTGGSAH_					0	0	0		CON__P15636	CON__P15636	CON__P15636	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.1961669921875	2	400.193908	798.373263	1.6964	0.00067887	1.33	0.00053225	3.0264	0.0012111	400.1946294840402	83.512	1.0624	83.343	83.033	84.096	-0.16916					58	24	3	0	0	0	1.043	1	10140	10140		30.504	0.6621	1	4784400		+	55891	521	39010	39075	61263	61263					-0.03398855804584855
NRTGGSAH	8	Unmodified	_NRTGGSAH_					0	0	0		CON__P15636	CON__P15636	CON__P15636	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.1962890625	2	400.193908	798.373263	-0.36218	-0.00014494	1.0806	0.00043243	0.71838	0.00028749	400.1941234050417	80.162	1.196	80.016	79.701	80.897	-0.146					62	28	3	0	0	0	0.96719	1	9571	9571		42.474	5.3154	1	1977600		+	55892	521	39010	39075	61264	61264					-0.03398855804584855
NRTNHIKV	8	Unmodified	_NRTNHIKV_					0	0	0			REV__nc|ENSG00000091181|Q01344-3|IL5RA	REV__nc|ENSG00000091181|Q01344-3|IL5RA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.3185729980469	2	491.283057	980.551562	0.041302	2.0291E-05	-1.7071	-0.00083865	-1.6658	-0.00081836	491.282291489092	29.6	0.24892	29.451	29.377	29.626	-0.14952					8	5	2	0	0	0	0.027866	1	1803	1803		10.265	0	1	28483	+		55893	20905	39011	39076	61265	61265					0.06050814114462355
NRTQGLINGAL	11	Unmodified	_NRTQGLINGAL_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.827392578125	2	578.825286	1155.63602	-0.35909	-0.00020785	0.17258	9.9891E-05	-0.18652	-0.00010796	578.8252200933243	19.047	0.44398	18.928	18.707	19.151	-0.11872					21	8	3	0	0	0	1.0521	1	365	365		24.519	1.4767	1	150920			55894	7816	39012	39077	61266	61266					0.06442720140580604
NRTRQVDN	8	Unmodified	_NRTRQVDN_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2904357910156	2	501.757404	1001.50025	0.55533	0.00027864	-2.347	-0.0011776	-1.7916	-0.00089897	501.75689220474266	86.484	0.30496	86.484	86.3	86.605	0					10	6	2	0	0	0	0.027866	1	10875	10875		26.693	1.1189	1	51002			55895	10361	39013	39078	61267	61267					-0.0004355465024445948
NRVEVIGIK	9	Unmodified	_NRVEVIGIK_					0	0	0			REV__ENST00000473670.1_1_8:91090573-91094370:-|nuORF	REV__ENST00000473670.1_1_8:91090573-91094370:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8004760742188	2	514.316566	1026.61858	-0.68243	-0.00035099	0.076182	3.9182E-05	-0.60625	-0.0003118	514.3162996538716	31.81	0.5237	31.81	31.386	31.91	0					19	12	2	0	0	0	0.024438	1	2131	2131		29.17	0	1	68681	+		55896	33244	39014	39079	61268	61268					0.10633424605566688
NRVIHRDLK	9	Unmodified	_NRVIHRDLK_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.84375	2	575.843813	1149.67307	-0.59889	-0.00034487	-0.87215	-0.00050222	-1.471	-0.00084709	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.67687	1	10906	10906		47.657	3.5405	1	2151700			55897	7617	39015	39080	61269	61269					0.10422436476960684
NRVRLPSF	8	Unmodified	_NRVRLPSF_					0	0	0			REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF	REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	494.789306640625	2	494.787976	987.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.215	1	30.29	29.79	30.79	0.074314								0	0	0	0.81261	1	1871	1871		33.516	0.70317	1		+		55898	29705	39016	39081	61270	61270					0.06712002119843419
NRVSGKLLTV	10	Unmodified	_NRVSGKLLTV_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4;REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7843017578125	2	543.835123	1085.65569	-1.5444	-0.00083993	0.29063	0.00015805	-1.2538	-0.00068187	543.8353623643437	50.908	0.50703	50.995	50.682	51.189	0.087009					26	13	3	0	0	0	0.03519	1	5298	5298		30.318	0	1	195460	+		55899	23009;36647	39017	39082	61271	61271					0.11629096151318663
NRVYKEMY	8	Unmodified	_NRVYKEMY_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;RORA-ANXA2|1|fusion;nc|ENSG00000182718|P07355-2|ANXA2;RORA-ANXA2|2|fusion	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8084106445312	2	551.771134	1101.52771	-1.2059	-0.0006654	1.1468	0.00063277	-0.05913	-3.2626E-05	551.7715654351842	55.787	0.51392	55.571	55.301	55.815	-0.21551					27	13	3	0	0	0	0.027866	1	5971	5971		33.516	1.5607	1	288580			55900	9156	39018	39083	61272	61272					-0.018987874342201394
NRWARGVH	8	Unmodified	_NRWARGVH_					0	0	0			REV__GPR25|p.R239W|1|0.07|ENSG00000170128|chr1:200873752-200873752|C/T|missense_variant	REV__GPR25|p.R239W|1|0.07|ENSG00000170128|chr1:200873752-200873752|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.79583740234375	2	498.267742	994.52093	-0.014334	-7.1423E-06	-0.79288	-0.00039507	-0.80722	-0.00040221	498.2673155883391	18.134	0.29724	17.927	17.714	18.011	-0.20669					6	5	2	0	0	0	0.027866	1	261	261		44.531	0.41427	1	23519	+		55901	36082	39019	39084	61273	61273					0.023450805200809555
NRWCQGCVFK	10	Unmodified	_NRWCQGCVFK_					0	0	0			REV__ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	REV__ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	621.7807006835938	2	620.789335	1239.56412	-0.044667	-2.7729E-05	-4.3326	-0.0026896	-4.3773	-0.0027174	621.2878551875917	57.167	1.0886	56.943	56.544	57.632	-0.2248					36	28	2	0	0	0	0.03519	1	6228	6228		34.173	21.966	1	501470	+		55902	21111	39020	39085	61274	61274					-0.04608233809176454
NRWDSLDIEA	10	Unmodified	_NRWDSLDIEA_					0	0	0			REV__ENSG00000138411|ENST00000644978|HECW2	REV__ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.87548828125	3	406.863165	1217.56767	1.5427	0.00062768	-3.1012	-0.0012618	-1.5585	-0.00063409	406.8617516967926	19.509	0.36874	19.509	19.366	19.735	0					9	7	2	0	0	0	0.03519	1	411	411		32.751	23.539	1	13679	+		55903	23852	39021	39086	61275	61275					-0.03241569229953711
NRWNVYAR	8	Unmodified	_NRWNVYAR_					0	0	0			REV__ENSG00000163755|ENST00000296051|HPS3	REV__ENSG00000163755|ENST00000296051|HPS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7989501953125	2	539.780682	1077.54681	-0.7818	-0.000422	0.45568	0.00024597	-0.32612	-0.00017603	539.7810665130245	70.561	0.34135	70.574	70.385	70.727	0.012421					10	7	2	0	0	0	0.027866	1	8438	8438		24.203	0	1	349240	+		55904	25630	39022	39087	61276	61276					0.011139299716887763
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2962036132812	2	564.29583	1126.57711	-0.53164	-0.0003	0.35987	0.00020307	-0.17177	-9.693E-05	564.2959439351575	40.687	1.205	40.551	40.238	41.443	-0.13553					66	31	4	0	0	0	0.19099	1	3548	3548		90.37	31.588	1	1780500			55905	362	39023	39088	61277	61277					0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.29638671875	2	564.29583	1126.57711	-0.17543	-9.8996E-05	0.15708	8.8637E-05	-0.018356	-1.0358E-05	564.2957824766013	40.914	1.0308	40.686	40.403	41.434	-0.2278					57	26	4	0	0	0	0.17822	1	3582	3582		93.195	32.224	1	1646100			55906	362	39023	39088	61278	61278					0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2955322265625	2	564.29583	1126.57711	-1.1768	-0.00066406	0.98151	0.00055386	-0.19528	-0.00011019	564.2963139759458	41.005	0.67285	40.775	40.485	41.157	-0.2303					51	17	4	0	0	0	0.2508	1	3576	3576		82.241	21.269	1	1504900			55907	362	39023	39088	61279	61279					0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.29583	1126.57711	-0.23594	-0.00013314	0.52052	0.00029373	0.28458	0.00016059	564.2959104900224	40.573	0.55714	40.573	40.314	40.871	0	-0.089203	5.1853E-05	NaN	93.195	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	892800			55908	362	39023	39088							0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.29583	1126.57711	0.56145	0.00031682	-0.51519	-0.00029072	0.046256	2.6102E-05	564.2953334412604	40.696	0.64334	40.573	40.336	40.98	-0.12317	-0.089652	-0.001117	NaN	93.195	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806880			55909	362	39023	39088							0.01888243846201476
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.29583	1126.57711	-0.88175	-0.00049757	1.1128	0.00062795	0.23106	0.00013039	564.2962228643621	40.793	0.6236	40.816	40.595	41.219	0.023003	0.15376	0.00072031	NaN	93.195	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	877850			55910	362	39023	39088							0.01888243846201476
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	408.24365234375	3	408.243763	1221.70946	-0.57661	-0.0002354	0.074998	3.0617E-05	-0.50161	-0.00020478	408.2437329724982	44.286	1.0474	44.181	43.889	44.937	-0.10468					79	27	5	0	0	0	0.34489	2	4146	4135;4146		69.628	12.479	1	4715500	+		55911	27618	39024	39089	61280;61281	61281					0.10747313373690304
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	408.2438659667969	3	408.243763	1221.70946	-0.39429	-0.00016097	-0.00011987	-4.8935E-08	-0.39441	-0.00016101	408.24368842727	44.504	1.0872	44.26	43.94	45.027	-0.2444					80	28	4	0	0	0	0.32811	3	4140	4140;4153;4165		71.877	18.281	1	4387900	+		55912	27618	39024	39089	61282;61283;61284	61282					0.10747313373690304
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	408.24273681640625	3	408.243763	1221.70946	-1.0512	-0.00042914	0.63074	0.00025749	-0.42046	-0.00017165	408.24397533397394	44.486	1.0433	44.267	43.936	44.979	-0.21939					73	27	4	0	0	0	0.56934	3	4140	4140;4151;4162		54.776	8.3195	1	5192400	+		55913	27618	39024	39089	61285;61286;61287	61285					0.10747313373690304
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	408.243763	1221.70946	-0.029472	-1.2032E-05	-0.046384	-1.8936E-05	-0.075856	-3.0968E-05	408.5781608530004	44.229	0.46319	44.229	44.056	44.519	0	-0.030978	-0.00035275	NaN	71.877	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221230	+		55914	27618	39024	39089							0.10747313373690304
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	408.243763	1221.70946	-0.7227	-0.00029504	0.44938	0.00018346	-0.27333	-0.00011158	408.24374526328563	44.508	0.39583	44.363	44.131	44.527	-0.14471	0.10339	0.00025443	NaN	71.877	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141110	+		55915	27618	39024	39089							0.10747313373690304
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	408.243763	1221.70946	-0.57661	-0.0002354	0.074998	3.0617E-05	-0.50161	-0.00020478	408.2437329724982	44.286	1.0474	44.181	43.889	44.937	-0.10468	-0.078914	-0.00020408	NaN	71.877	79	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4715500	+		55916	27618	39024	39089							0.10747313373690304
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	408.243763	1221.70946	-0.39429	-0.00016097	-0.00011987	-4.8935E-08	-0.39441	-0.00016101	408.24368842727	44.504	1.0872	44.26	43.94	45.027	-0.2444	-8.7425E-05	-0.00029608	NaN	71.877	80	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4387900	+		55917	27618	39024	39089							0.10747313373690304
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	408.243763	1221.70946	-1.0512	-0.00042914	0.63074	0.00025749	-0.42046	-0.00017165	408.24397533397394	44.486	1.0433	44.267	43.936	44.979	-0.21939	0.0065935	0.00047655	NaN	71.877	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5192400	+		55918	27618	39024	39089							0.10747313373690304
NRYILLDNLD	10	Unmodified	_NRYILLDNLD_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.8919677734375	3	416.890944	1247.651	-0.85608	-0.00035689	1.8888	0.00078743	1.0327	0.00043054	416.8916478868051	38.049	1.0372	37.827	37.542	38.579	-0.22148					66	28	4	0	0	0	1.0275	1	3103	3103		42.338	8.7965	1	2767700	+		55919	24273	39025	39090	61288	61288					0.03708167217905611
NRYNLQLI	8	Unmodified	_NRYNLQLI_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2928466796875	2	517.293091	1032.57163	-0.51783	-0.00026787	0.10758	5.565E-05	-0.41025	-0.00021222	517.2928557775653	54.732	0.55849	54.586	54.353	54.911	-0.14609					37	14	4	0	0	0	0.88442	1	5839	5839		52.299	4.3836	1	2594000			55920	4087	39026	39091	61289	61289					0.05664565054416926
NRYRQESV	8	Unmodified	_NRYRQESV_					0	0	0			REV__nc|ENSG00000172667|Q9HA38-2|ZMAT3	REV__nc|ENSG00000172667|Q9HA38-2|ZMAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2691040039062	2	526.267604	1050.52066	-0.3701	-0.00019477	3.0605	0.0016106	2.6904	0.0014159	526.2689013794172	66.434	0.74554	66.189	65.732	66.477	-0.24517					36	19	4	0	0	0	0.87148	1	7609	7609		53.351	0	1	1384500	+		55921	26695	39027	39092	61290	61290					-0.0025838399044459948
NSAAFFKV	8	Unmodified	_NSAAFFKV_					0	0	0		ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2767028808594	2	442.237253	882.459953	-0.23057	-0.00010197	0.65324	0.00028889	0.42267	0.00018692	442.2374075682801	48.57	0.49171	48.636	48.378	48.87	0.066795					21	13	2	0	0	0	0.027866	1	4891	4891		17.365	0	1	206860			55922	5770	39028	39093	61291	61291					0.014021306972949787
NSAFIAAR	8	Unmodified	_NSAFIAAR_					0	0	0		GRK1|p.Q118Rfs*13|1|0.28|ENSG00000185974|chr13:113667734-113667734|C/-|frameshift_variant;ENSG00000185974|ENST00000335678|GRK1	GRK1|p.Q118Rfs*13|1|0.28|ENSG00000185974|chr13:113667734-113667734|C/-|frameshift_variant	GRK1|p.Q118Rfs*13|1|0.28|ENSG00000185974|chr13:113667734-113667734|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.73480224609375	2	425.232502	848.450451	0.42544	0.00018091	4.4701	0.0019008	4.8955	0.0020817	425.2329980942376	36.952	1.1894	36.952	36.37	37.559	0					92	31	4	0	0	0	0.027866	1	3030	3030		11.511	0	1	784190			55923	9500	39029	39094	61292	61292					0.020163624117572
NSALLRSP	8	Unmodified	_NSALLRSP_					0	0	0		nc|ENSG00000187010|Q02161-4|RHD;nc|ENSG00000187010|Q02161-3|RHD;nc|ENSG00000187010|Q02161-2|RHD;nc|ENSG00000187010|Q02161-6|RHD;ENST00000564398.5_1_1:25598999-25633293:+|nuORF;nc|ENSG00000187010|Q02161-5|RHD;ENSG00000187010|ENST00000328664|RHD;nc|ENSG00000188672|P18577-8|RHCE;nc|ENSG00000188672|P18577-7|RHCE;nc|ENSG00000188672|P18577-11|RHCE;nc|ENSG00000188672|P18577-2|RHCE;nc|ENSG00000188672|P18577-5|RHCE;nc|ENSG00000188672|P18577-6|RHCE;ENST00000527187.5_1_1:25712128-25747316:-|nuORF;ENSG00000188672|ENST00000294413|RHCE	nc|ENSG00000187010|Q02161-4|RHD	nc|ENSG00000187010|Q02161-4|RHD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.18646240234375	2	429.245609	856.476666	0.1293	5.5501E-05	0.20267	8.6996E-05	0.33197	0.0001425	429.245438806604	24.787	0.51205	24.572	24.296	24.809	-0.2151					16	11	2	0	0	0	0.027866	1	1147	1147		30.318	1.1682	1	73820			55924	18599	39030	39095	61293	61293					0.04268631583227034
NSALLRSP	8	Unmodified	_NSALLRSP_					0	0	0		nc|ENSG00000187010|Q02161-4|RHD;nc|ENSG00000187010|Q02161-3|RHD;nc|ENSG00000187010|Q02161-2|RHD;nc|ENSG00000187010|Q02161-6|RHD;ENST00000564398.5_1_1:25598999-25633293:+|nuORF;nc|ENSG00000187010|Q02161-5|RHD;ENSG00000187010|ENST00000328664|RHD;nc|ENSG00000188672|P18577-8|RHCE;nc|ENSG00000188672|P18577-7|RHCE;nc|ENSG00000188672|P18577-11|RHCE;nc|ENSG00000188672|P18577-2|RHCE;nc|ENSG00000188672|P18577-5|RHCE;nc|ENSG00000188672|P18577-6|RHCE;ENST00000527187.5_1_1:25712128-25747316:-|nuORF;ENSG00000188672|ENST00000294413|RHCE	nc|ENSG00000187010|Q02161-4|RHD	nc|ENSG00000187010|Q02161-4|RHD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	429.245609	856.476666	2.3325	0.0010012	-2.646	-0.0011358	-0.31351	-0.00013457	429.244485955456	24.664	0.5701	24.483	24.285	24.855	-0.18089	-0.044461	-0.0010933	NaN	23.523	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48148			55925	18599	39030	39095							0.04268631583227034
NSAMRTSIPQL	11	Unmodified	_NSAMRTSIPQL_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.5476989746094	3	406.548412	1216.62341	0.52566	0.00021371	-2.7476	-0.001117	-2.2219	-0.00090332	406.54722238804004	40.244	0.87197	40.132	39.792	40.664	-0.11223					69	23	4	0	0	0	1.0013	1	3507	3507		36.528	0.21026	1	2738200			55926	769	39031	39096	61294	61294					0.02375940686033573
NSAMRTSIPQL	11	Unmodified	_NSAMRTSIPQL_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	406.548412	1216.62341	1.2776	0.0005194	-3.7913	-0.0015414	-2.5137	-0.0010219	406.5467998782171	40.162	0.81376	40.162	39.843	40.657	0	-0.079032	-0.00078278	NaN	36.528	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2913800			55927	769	39031	39096							0.02375940686033573
NSARVIPTL	9	Unmodified	_NSARVIPTL_					0	0	0			REV__nc|ENSG00000176754|Q3SY05-2|LINC00303	REV__nc|ENSG00000176754|Q3SY05-2|LINC00303	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.76702880859375	2	485.787641	969.56073	-0.85849	-0.00041704	0.027527	1.3372E-05	-0.83096	-0.00040367	485.7876208377282	46.941	1.0988	47	46.516	47.615	0.059097					95	30	5	0	0	0	0.0242	1	4598	4598		60.118	0	1	7541800	+		55928	36968	39032	39097	61295	61295					0.07473162680128098
NSASSPSPTLD	11	Unmodified	_NSASSPSPTLD_					0	0	0			REV__ENSG00000177354|ENST00000374144|C10orf71	REV__ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.8207397460938	2	538.248743	1074.48293	-0.78957	-0.00042498	-1.0131	-0.00054532	-1.8027	-0.0009703	538.7496435597093	64.976	0.68108	64.742	64.452	65.133	-0.2345					22	16	2	0	0	0	0.024797	1	7409	7409		38.754	0	1	71223	+		55929	27106	39033	39098	61296	61296					-0.051329397665540455
NSAYPYDVM	9	Unmodified	_NSAYPYDVM_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	530.226225	1058.4379	-0.91032	-0.00048268	2.6363	0.0013978	1.7259	0.00091514	530.2273606392482	39.971	0.24868	39.994	39.84	40.088	0.023006					9	6	2	0	0	0	0.024457	1	3424	3424		37.159	22.294	1	157010	+		55930	23765	39034	39099	61297	61297					-0.0889846183345071
NSAYPYDVM	9	Unmodified	_NSAYPYDVM_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.226225	1058.4379	-0.54213	-0.00028745	5.259	0.0027885	4.7169	0.002501	530.2292690337439	39.952	0.56217	39.802	39.591	40.153	-0.1497	-0.069227	0.0012179	NaN	29.15	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198250	+		55931	23765	39034	39099							-0.0889846183345071
NSAYPYDVM	9	Unmodified	_NSAYPYDVM_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.226225	1058.4379	-0.60164	-0.000319	5.3427	0.0028329	4.7411	0.0025139	530.2292405518518	40.069	0.67603	39.844	39.62	40.296	-0.225	-0.027233	0.0013067	NaN	29.15	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189490	+		55932	23765	39034	39099							-0.0889846183345071
NSAYPYDVM	9	Unmodified	_NSAYPYDVM_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.226225	1058.4379	-0.59587	-0.00031595	4.0987	0.0021732	3.5028	0.0018573	530.2283987932075	40.075	0.42343	39.845	39.623	40.046	-0.23021	-0.026609	-1.2578E-05	NaN	29.15	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176820	+		55933	23765	39034	39099							-0.0889846183345071
NSCDHKILIAL	11	Unmodified	_NSCDHKILIAL_					0	0	0		ENST00000468410.5_1_7:106841924-106842017:+|nuORF	ENST00000468410.5_1_7:106841924-106842017:+|nuORF	ENST00000468410.5_1_7:106841924-106842017:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	613.8323974609375	2	613.831723	1225.64889	-0.40645	-0.00024949	1.0316	0.00063325	0.62519	0.00038376	613.8323034815196	99.114	1.0987	99.114	98.647	99.746	0					87	24	4	0	0	0	0.849	1	12720	12720		54.722	1.6334	1	1972500			55934	14868	39035	39100	61298	61298					0.04509415208462997
NSDELLKIS	9	Unmodified	_NSDELLKIS_					0	0	0		nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3209228515625	2	509.774396	1017.53424	0.46963	0.0002394	-0.50345	-0.00025665	-0.033822	-1.7242E-05	509.77392465921804	69.65	1.2079	69.358	68.753	69.96	-0.29291					85	30	4	0	0	0	0.024261	1	8361	8361		54.776	0	1	2286100			55935	7948	39036	39101	61299	61299					0.026174289981327092
NSDELQELY	9	Unmodified	_NSDELQELY_					0	0	0		nc|ENSG00000160209|O00764-2|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-2|PDXK	nc|ENSG00000160209|O00764-2|PDXK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7507934570312	2	555.751118	1109.48768	-0.84949	-0.00047211	0.77291	0.00042954	-0.076588	-4.2564E-05	555.7513889452541	64.917	0.76553	64.714	64.42	65.186	-0.20254					50	18	5	0	0	0	0.16638	1	7400	7400		95.815	1.8087	1	1786900			55936	6792	39037	39102	61300	61300					-0.06268055623786495
NSDELQELY	9	Unmodified	_NSDELQELY_					0	0	0		nc|ENSG00000160209|O00764-2|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-2|PDXK	nc|ENSG00000160209|O00764-2|PDXK	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	555.751118	1109.48768	-0.57769	-0.00032105	0.61547	0.00034205	0.037787	2.1E-05	555.7512657571493	64.924	0.84062	64.689	64.374	65.214	-0.2345	-0.018369	1.4246E-05	NaN	95.815	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1372500			55937	6792	39037	39102							-0.06268055623786495
NSDINSNHY	9	Unmodified	_NSDINSNHY_					0	0	0		AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.225341796875	2	532.225602	1062.43665	-0.34895	-0.00018572	-0.29558	-0.00015731	-0.64453	-0.00034303	532.2254512238685	27.73	1.1218	27.487	27.163	28.284	-0.24217					74	26	5	0	0	0	0.01388	4	1541	1541;1552;1564;1580		199.7	101.08	1	6526500			55938	46	39038	39103	61301;61302;61303;61304	61301					-0.09206959877997178
NSDINSNHY	9	Unmodified	_NSDINSNHY_					0	0	0		AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2252807617188	2	532.225602	1062.43665	-1.1751	-0.00062539	0.56261	0.00029944	-0.61244	-0.00032596	532.2259240020641	27.549	1.1157	27.381	27.057	28.172	-0.16816					72	26	5	0	0	0	0.013024	4	1510	1510;1521;1533;1546		264.95	115.12	1	7058300			55939	46	39038	39103	61305;61306;61307;61308	61305					-0.09206959877997178
NSDINSNHY	9	Unmodified	_NSDINSNHY_					0	0	0		AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.225602	1062.43665	-0.38162	-0.00020311	0.088764	4.7243E-05	-0.29286	-0.00015587	532.2255728658406	27.483	0.58101	27.326	27.104	27.685	-0.15664	-0.071941	-0.00011486	NaN	264.95	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579800			55940	46	39038	39103							-0.09206959877997178
NSDIWLNL	8	Unmodified	_NSDIWLNL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.751953125	2	487.750724	973.486896	-1.0928	-0.00053302	4.337	0.0021154	3.2442	0.0015823	487.7525506667395	75.238	0.70407	75.238	74.955	75.659	0					41	18	3	0	0	0	0.58886	1	9248	9248		77.318	2.2743	1	1586000			55941	7475	39039	39104	61309	61309					-0.0009080548219344564
NSDKLKDF	8	Unmodified	_NSDKLKDF_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.6466064453125	2	483.748182	965.481811	-0.48114	-0.00023275	1.3805	0.00066784	0.8994	0.00043509	483.75044250312254	48.785	0.53516	48.632	48.329	48.864	-0.15277					17	14	2	0	0	0	0.027866	1	4990	4990		37.159	0	1	70755	+		55942	20419	39040	39105	61310	61310					-0.002311093448156498
NSDLFKRCD	9	Unmodified	_NSDLFKRCD_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7142333984375	2	549.255848	1096.49714	-1.1711	-0.00064321	-2.4	-0.0013182	-3.5711	-0.0019614	549.2539708655349	44.122	0.64725	43.903	43.672	44.319	-0.21938					22	17	3	0	0	0	0.024409	1	4105	4105		49.536	16.724	1	156350	+		55943	24144	39041	39106	61311	61311					-0.04724565819265081
NSDLNNLLF	9	Unmodified	_NSDLNNLLF_					0	0	0		ENST00000504949.1_1_5:95067575-95091515:+|nuORF;ENSG00000164292|ENST00000379982|RHOBTB3	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENST00000504949.1_1_5:95067575-95091515:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2664184570312	2	525.266739	1048.51892	0.31642	0.00016621	0.43666	0.00022936	0.75308	0.00039557	525.2663804263314	83.7	1.6244	83.561	82.995	84.619	-0.1386					96	37	6	0	0	0	0.34489	1	10106	10106		69.628	0.8408	1	901040			55944	7252	39042	39107	61312	61312					-0.00339437799038933
NSDLRNDDSA	10	Unmodified	_NSDLRNDDSA_					0	0	0		ENSG00000169122|ENST00000519262|FAM110B	ENSG00000169122|ENST00000519262|FAM110B	ENSG00000169122|ENST00000519262|FAM110B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7591552734375	2	553.739074	1105.46359	-1.6413	-0.00090888	-3.9767	-0.002202	-5.618	-0.0031109	553.7371495568183	52.319	0.33137	52.05	51.831	52.162	-0.26903					10	8	2	0	0	0	0.03519	1	5421	5421		21.686	0	1	83204			55945	7904	39043	39108	61313	61313					-0.08491896057466874
NSDPGLAVGY	10	Unmodified	_NSDPGLAVGY_					0	0	0		CON__ENSEMBL:ENSBTAP00000006074;ENST00000504720.5_1_5:79374662-79378961:+|nuORF;nc|ENSG00000105664|P49747-2|COMP;ENSG00000105664|ENST00000222271|COMP;nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3;ENSG00000113296|ENST00000350881|THBS4	CON__ENSEMBL:ENSBTAP00000006074;ENSG00000169231|ENST00000368378|THBS3;ENSG00000113296|ENST00000350881|THBS4	CON__ENSEMBL:ENSBTAP00000006074	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.73779296875	2	496.737814	991.461075	-0.3539	-0.0001758	0.52725	0.0002619	0.17335	8.6107E-05	496.73792797206306	58.673	0.75848	58.485	58.18	58.938	-0.18795					45	18	3	0	0	0	0.80817	1	6459	6459		60.118	8.7828	1	1757400		+	55946	482;7916;3278	39044	39109	61314	61314					-0.03499699724477523
NSDPGLAVGY	10	Unmodified	_NSDPGLAVGY_					0	0	0		CON__ENSEMBL:ENSBTAP00000006074;ENST00000504720.5_1_5:79374662-79378961:+|nuORF;nc|ENSG00000105664|P49747-2|COMP;ENSG00000105664|ENST00000222271|COMP;nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3;ENSG00000113296|ENST00000350881|THBS4	CON__ENSEMBL:ENSBTAP00000006074;ENSG00000169231|ENST00000368378|THBS3;ENSG00000113296|ENST00000350881|THBS4	CON__ENSEMBL:ENSBTAP00000006074	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.73797607421875	2	496.737814	991.461075	0.49265	0.00024472	-0.34143	-0.0001696	0.15122	7.5115E-05	496.73749645894696	58.758	0.71858	58.516	58.258	58.977	-0.24165					41	17	3	0	0	0	0.59716	1	6458	6458		77.318	27.876	1	2060400		+	55947	482;7916;3278	39044	39109	61315	61315					-0.03499699724477523
NSDPGLAVGY	10	Unmodified	_NSDPGLAVGY_					0	0	0		CON__ENSEMBL:ENSBTAP00000006074;ENST00000504720.5_1_5:79374662-79378961:+|nuORF;nc|ENSG00000105664|P49747-2|COMP;ENSG00000105664|ENST00000222271|COMP;nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3;ENSG00000113296|ENST00000350881|THBS4	CON__ENSEMBL:ENSBTAP00000006074;ENSG00000169231|ENST00000368378|THBS3;ENSG00000113296|ENST00000350881|THBS4	CON__ENSEMBL:ENSBTAP00000006074	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.737814	991.461075	0.16007	7.9515E-05	0.19142	9.5084E-05	0.35149	0.0001746	496.7377019646263	58.661	0.68361	58.479	58.228	58.911	-0.18133	-0.013997	0.00012738	NaN	77.318	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1829700		+	55948	482;7916;3278	39044	39109							-0.03499699724477523
NSDRPEVR	8	Unmodified	_NSDRPEVR_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2612609863281	2	486.746505	971.478456	-0.61286	-0.00029831	-2.3139	-0.0011263	-2.9267	-0.0014246	486.74567757951803	45.981	0.61942	46.032	45.655	46.274	0.051395					24	17	2	0	0	0	0.027866	1	4482	4482		49.442	10.635	1	138950	+		55949	25715	39045	39110	61316	61316					-0.008423593988140965
NSDVLSSNI	9	Unmodified	_NSDVLSSNI_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7627258300781	2	474.735271	947.45599	0.69562	0.00033024	0.72176	0.00034265	1.4174	0.00067288	474.7355505037812	47.307	0.31927	47.307	47.111	47.43	0					10	8	2	0	0	0	0.024344	1	4749	4749		45.972	27.648	1	148010	+		55950	21171	39046	39111	61317	61317					-0.019840035870970496
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7513427734375	2	512.750921	1023.48729	-0.80305	-0.00041176	0.072895	3.7377E-05	-0.73015	-0.00037439	512.7509949960778	69.24	1.8211	68.979	68.142	69.963	-0.26165					116	43	7	0	0	0	0.01388	5	8048	8012;8024;8036;8048;8064		209.84	102.83	1	10522000			55951	7061	39047	39112	61318;61319;61320;61321;61322	61321					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7510986328125	2	512.750921	1023.48729	0.15694	8.0472E-05	-1.0102	-0.00051801	-0.85331	-0.00043753	512.7504749051333	69.183	1.5179	68.94	68.39	69.908	-0.24278					115	36	6	0	0	0	0.012922	5	8051	8013;8025;8037;8051;8065		199.7	86.293	1	10325000			55952	7061	39047	39112	61323;61324;61325;61326;61327	61326					-0.023514305530056845
NSDVSLLNY	9	Unmodified	_NSDVSLLNY_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.750732421875	2	512.750921	1023.48729	-0.23455	-0.00012027	-0.57457	-0.00029461	-0.80912	-0.00041488	512.7505692672653	69.215	1.7656	68.993	68.164	69.929	-0.22246					92	39	4	0	0	0	0.011521	4	8014	8002;8014;8026;8039		229.33	103.51	1	10071000			55953	7061	39047	39112	61328;61329;61330;61331	61329					-0.023514305530056845
NSDVVEQIY	9	Unmodified	_NSDVVEQIY_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7555541992188	2	533.756204	1065.49785	-0.3262	-0.00017411	0.19446	0.00010379	-0.13175	-7.0321E-05	533.7561901273452	60.4	0.83107	60.202	59.911	60.742	-0.19773					52	20	4	0	0	0	0.22379	3	6720	6711;6720;6733		85.862	13.61	1	2483800			55954	5820	39048	39113	61332;61333;61334	61333					-0.03227447898552782
NSDVVEQIY	9	Unmodified	_NSDVVEQIY_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7555541992188	2	533.756204	1065.49785	-0.99716	-0.00053224	0.75923	0.00040524	-0.23793	-0.000127	533.7564770203098	60.35	1.02	60.174	59.813	60.833	-0.1761					60	25	4	0	0	0	0.14181	2	6713	6704;6713		101.25	30.483	1	2589100			55955	5820	39048	39113	61335;61336	61336					-0.03227447898552782
NSDVVEQIY	9	Unmodified	_NSDVVEQIY_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7533569335938	2	533.756204	1065.49785	-0.86752	-0.00046304	0.4444	0.0002372	-0.42311	-0.00022584	533.7562965892765	60.454	1.1491	60.201	59.904	61.053	-0.25373					68	28	4	0	0	0	0.26413	2	6711	6711;6722		80.455	12.863	1	2227500			55956	5820	39048	39113	61337;61338	61337					-0.03227447898552782
NSEDKDRK	8	Unmodified	_NSEDKDRK_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28704833984375	2	496.243795	990.473037	0.2776	0.00013776	-3.3368	-0.0016559	-3.0592	-0.0015181	496.2420935572841	66.527	0.72009	66.527	66.368	67.088	0					23	19	2	0	0	0	0.027866	1	7990	7990		51.193	0	1	619130			55957	7936	39049	39114	61339	61339					-0.022580829812909542
NSEEKTPAP	9	Unmodified	_NSEEKTPAP_					0	0	0		nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7477722167969	2	486.735271	971.45599	0.47082	0.00022916	-1.8277	-0.0008896	-1.3569	-0.00066044	486.73441134248765	70.251	0.32089	70.037	69.814	70.135	-0.21425					14	7	3	0	0	0	0.024344	1	8143	8143		54.776	19.158	1	115580			55958	1415	39050	39115	61340	61340					-0.03088003587095045
NSEGTGVAL	9	Unmodified	_NSEGTGVAL_					0	0	0		ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.73455810546875	2	424.211432	846.408311	-0.30808	-0.00013069	0.82506	0.00035	0.51698	0.00021931	424.21171407247414	37.312	0.67547	37.249	37.014	37.69	-0.063385					36	18	3	0	0	0	0.024294	1	3023	3023		21.96	0	1	287820			55959	7799	39051	39116	61341	61341					-0.021036577872905582
NSEIGKWAPS	10	Unmodified	_NSEIGKWAPS_					0	0	0		nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-5|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.791015625	2	544.772188	1087.52982	0.15509	8.4488E-05	0.31933	0.00017396	0.47442	0.00025845	544.7735566008954	58.966	0.3208	58.966	58.787	59.108	0					14	8	2	0	0	0	0.03519	1	6728	6728		80.455	12.961	1	170590			55960	18525	39052	39117	61342	61342					-0.010440354247748473
NSEILKWDDN	10	Unmodified	_NSEILKWDDN_					0	0	0			REV__FAM111A|p.N245S|1|0.15|ENSG00000166801|chr11:59152402-59152402|A/G|missense_variant	REV__FAM111A|p.N245S|1|0.15|ENSG00000166801|chr11:59152402-59152402|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	616.75048828125	2	617.290942	1232.56733	-0.36177	-0.00022332	0.2209	0.00013636	-0.14087	-8.696E-05	617.2908847739832	48.819	0.36491	48.637	48.408	48.773	-0.18206					14	9	2	0	0	0	0.03519	1	4834	4834		83.647	0	1	125480	+		55961	36019	39053	39118	61343	61343					-0.03964988949792314
NSEKGTKLEL	10	Unmodified	_NSEKGTKLEL_					0	0	0			REV__nc|ENSG00000138346|P51530-2|DNA2	REV__nc|ENSG00000138346|P51530-2|DNA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.8097534179688	2	559.806228	1117.5979	0.48254	0.00027013	4.2317	0.0023689	4.7142	0.002639	559.8083726438451	82.851	0.56256	82.631	82.434	82.997	-0.22015					35	12	4	0	0	0	0.59716	1	9992	9992		77.318	13.11	1	1094500	+		55962	23843	39054	39119	61344	61344					0.04380789435231236
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2718505859375	2	562.272552	1122.53055	-0.75124	-0.0004224	-0.045579	-2.5628E-05	-0.79682	-0.00044803	562.2725047039298	45.13	1.4861	45.031	44.472	45.958	-0.099449					112	40	5	0	0	0	0.0089904	4	4264	4241;4252;4264;4279		237.92	122.43	1	12295000			55963	2661	39055	39120	61345;61346;61347;61348	61347					-0.025812407757030087
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2723999023438	2	562.272552	1122.53055	-0.1349	-7.5848E-05	-0.78772	-0.00044291	-0.92262	-0.00051876	562.272125695383	45.356	1.4703	45.103	44.429	45.9	-0.25252					124	39	7	0	0	0	0.0085188	4	4283	4258;4270;4283;4295		253.05	136.14	1	12066000			55964	2661	39055	39120	61349;61350;61351;61352	61351					-0.025812407757030087
NSELLNDRY	9	Unmodified	_NSELLNDRY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.272705078125	2	562.272552	1122.53055	-0.56964	-0.00032029	-0.17877	-0.00010052	-0.74842	-0.00042081	562.2724594633252	45.315	1.6744	45.104	44.436	46.111	-0.21109					108	45	5	0	0	0	0.013442	4	4253	4253;4264;4276;4288		268.72	128.75	1	12616000			55965	2661	39055	39120	61353;61354;61355;61356	61353					-0.025812407757030087
NSENEPPNDC	10	Carbamidomethyl (C)	_NSENEPPNDC(Carbamidomethyl (C))_	NSENEPPNDC(1)		NSENEPPNDC(58)		0	1	0		ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.2379150390625	2	588.217117	1174.41968	-0.91004	-0.0005353	-2.1986	-0.0012933	-3.1086	-0.0018286	588.2162741077043	53.677	0.35251	53.48	53.387	53.74	-0.19739					20	10	3	0	0	0	0.03519	1	5643	5643		58.23	41.513	1	253930			55966	5945	39056	39121	61357	61357	77				-0.1605524854610394
NSENYLTLL	9	Unmodified	_NSENYLTLL_					0	0	0		ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.3424072265625	2	533.774396	1065.53424	-1.2371	-0.00066033	-1.2185	-0.00065043	-2.4556	-0.0013108	534.2754077044971	65.916	0.20491	65.702	65.629	65.834	-0.21327					6	4	2	0	0	0	0.024541	1	7556	7556		8.2351	0	1	60445			55967	8082	39057	39122	61358	61358					0.004094289981367183
NSEQIAKKP	9	Unmodified	_NSEQIAKKP_					0	0	0			REV__ENSG00000177576|ENST00000318240|C18orf32	REV__ENSG00000177576|ENST00000318240|C18orf32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3035888671875	2	507.782556	1013.55056	-0.52061	-0.00026436	0.044357	2.2524E-05	-0.47626	-0.00024184	507.78244500182086	47.041	1.074	47.1	46.349	47.423	0.059093					45	29	2	0	0	0	0.024427	1	4596	4596		42.396	11.892	1	442820	+		55968	27126	39058	39123	61359	61359					0.044325549548943854
NSFDINLI	8	Unmodified	_NSFDINLI_					0	0	0			REV__ENSG00000186191|ENST00000375483|BPIFB4	REV__ENSG00000186191|ENST00000375483|BPIFB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.76678466796875	2	468.245275	934.475997	0.15633	7.32E-05	3.8594	0.0018072	4.0157	0.0018804	468.2467516687803	35.031	1.3692	35.075	34.634	36.003	0.04406					50	35	2	0	0	0	0.027866	1	2639	2639		20.947	9.4359	1	389320	+		55969	27834	39059	39124	61360	61360					0.006137921435083626
NSFEHEFLS	9	Unmodified	_NSFEHEFLS_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.329833984375	2	555.248546	1108.48254	-0.94612	-0.00052533	-2.2887	-0.0012708	-3.2348	-0.0017961	555.7485349055527	28.32	0.76995	28.074	27.593	28.363	-0.24524					23	18	2	0	0	0	0.024539	1	1669	1669		35.618	11.416	1	44363			55970	922	39060	39125	61361	61361					-0.06736314695740475
NSFGIISILL	10	Unmodified	_NSFGIISILL_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8207397460938	2	538.82115	1075.62775	-0.81783	-0.00044067	0.99863	0.00053808	0.1808	9.7417E-05	538.8213314744714	64.908	0.64014	64.673	64.452	65.092	-0.2345					38	15	4	0	0	0	0.94316	1	7409	7409		51.193	0	1	1435500	+		55971	26442	39061	39126	61362	61362					0.09295773171243127
NSFIPTEVS	9	Unmodified	_NSFIPTEVS_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.26910400390625	2	497.248015	992.481476	-0.59365	-0.00029519	-1.2154	-0.00060437	-1.8091	-0.00089956	497.2472664413075	53.224	0.51879	53.077	52.72	53.239	-0.14723					19	13	2	0	0	0	0.024374	1	5739	5739		25.574	8.106	1	148040			55972	5239	39062	39127	61363	61363					-0.015065290646703033
NSFKGIKYL	9	Unmodified	_NSFKGIKYL_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4683234-4684926:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.77490234375	2	535.305667	1068.59678	-0.541	-0.0002896	-1.1702	-0.00062639	-1.7112	-0.000916	535.3048374939777	63.361	0.4708	63.177	62.955	63.426	-0.18386					19	11	2	0	0	0	0.024397	1	7139	7139		31.53	0	1	479590			55973	5532	39063	39128	61364	61364					0.06522619856991696
NSFKPVALIN	10	Unmodified	_NSFKPVALIN_					0	0	0			REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|13|3|sense	REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|13|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.8167724609375	2	551.816399	1101.61824	-0.53514	-0.0002953	2.0008	0.001104	1.4656	0.00080875	551.8173634686718	93.296	0.80151	93.304	92.971	93.773	0.0077286					49	18	4	0	0	0	0.72729	1	11767	11767		65.465	3.358	1	938900	+		55974	37336	39064	39129	61365	61365					0.07150004885716044
NSFLLLGPFP	10	Unmodified	_NSFLLLGPFP_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.8174438476562	2	552.808042	1103.60153	-0.16346	-9.0363E-05	-4.3586	-0.0024095	-4.522	-0.0024998	552.8056258243398	52.233	1.1683	52.048	51.705	52.874	-0.18405					48	29	3	0	0	0	0.03519	1	5442	5442		29.15	0	1	1227100			55975	16558	39065	39130	61366	61366					0.05387503999759247
NSFLMVIIDV	10	Unmodified	_NSFLMVIIDV_					0	0	0		ENST00000470300.5_1_1:247061565-247061601:-|nuORF	ENST00000470300.5_1_1:247061565-247061601:-|nuORF	ENST00000470300.5_1_1:247061565-247061601:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8429565429688	2	575.812467	1149.61038	0.0075299	4.3358E-06	-0.37841	-0.00021789	-0.37088	-0.00021356	575.8121388104651	89.977	0.37875	89.839	89.619	89.997	-0.13825					15	8	2	0	0	0	0.03519	1	10972	10972		22.58	0	1	72704			55976	14929	39066	39131	61367	61367					0.041561095739098164
NSFPPPTVI	9	Unmodified	_NSFPPPTVI_					0	0	0			REV__ENST00000246006.4_1_20:23064260-23064440:-|nuORF	REV__ENST00000246006.4_1_20:23064260-23064440:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2613525390625	2	486.263468	970.512382	-0.92066	-0.00044769	-3.4822	-0.0016933	-4.4029	-0.0021409	486.2616687740074	38.218	0.94033	38.136	37.883	38.823	-0.082512					63	25	4	0	0	0	0.39228	1	3179	3179		66.429	3.123	1	5686700	+		55977	29471	39067	39132	61368	61368					0.025946690402406603
NSGAPVGVLL	10	Unmodified	_NSGAPVGVLL_					0	0	0			REV__ENSG00000242616|ENST00000374293|GNG10	REV__ENSG00000242616|ENST00000374293|GNG10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.2771301269531	2	463.768917	925.523281	0.48289	0.00022395	-0.35196	-0.00016323	0.13093	6.072E-05	463.7686486648815	59.238	0.6456	58.996	58.738	59.384	-0.24165					19	15	2	0	0	0	0.03519	1	6567	6567		68.787	17.451	1	264410	+		55978	28980	39068	39133	61369	61369					0.05754071414526152
NSGCLEERDL	10	Unmodified	_NSGCLEERDL_					0	0	0			REV__ENSG00000120328|ENST00000239450|PCDHB12	REV__ENSG00000120328|ENST00000239450|PCDHB12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.80322265625	2	568.256045	1134.49754	0.012389	7.04E-06	-3.995	-0.0022702	-3.9826	-0.0022631	568.2536673279582	97.78	0.90201	97.778	97.322	98.224	-0.0020752					31	20	2	0	0	0	0.03519	1	12377	12377		35.152	0	1	60551	+		55979	22526	39069	39134	61370	61370					-0.06433190890061269
NSGILGIQP	9	Unmodified	_NSGILGIQP_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MSMS	OPSCC_39_ClassI_Rep-3	3	449.7533264160156	2	449.753267	897.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.337	1	61.408	60.908	61.908	0.071125								0	0	0	0.17581	1	7014	7014		76.774	5.4784	1				55980	10490	39070	39135	61371	61371					0.03913498380427427
NSGLEKTEA	9	Unmodified	_NSGLEKTEA_					0	0	0		ENST00000460159.1_1_6:110746078-110746521:-|nuORF;nc|ENSG00000004809|Q86VW1-2|SLC22A16;ENSG00000004809|ENST00000368919|SLC22A16	ENST00000460159.1_1_6:110746078-110746521:-|nuORF	ENST00000460159.1_1_6:110746078-110746521:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7646484375	2	474.735271	947.45599	0.073242	3.4771E-05	-3.2233	-0.0015302	-3.1501	-0.0014954	474.73260614323874	92.32	0.32522	92.179	91.965	92.29	-0.14131					11	7	2	0	0	0	0.024511	1	11299	11299		19.104	11.413	1	52110			55981	747	39071	39136	61372	61372					-0.019840035870743122
NSGLEQDAPQ	10	Unmodified	_NSGLEQDAPQ_					0	0	0			REV__nc|ENSG00000175497|Q8N608-3|DPP10	REV__nc|ENSG00000175497|Q8N608-3|DPP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	2	529.741085	1057.46762	-1.142	-0.00060495	-1.175	-0.00062247	-2.317	-0.0012274	529.7409580253066	73.344	0.36765	73.344	73.109	73.477	0					13	9	3	0	0	0	0.03519	1	8936	8936		20.837	0	1	299980	+		55982	36960	39072	39137	61373	61373					-0.05881806563752434
NSGLINHQ	8	Unmodified	_NSGLINHQ_					0	0	0		ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENSG00000172466|ENST00000261332|ZNF24	ENSG00000172466|ENST00000261332|ZNF24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.787841796875	2	441.725041	881.435529	0.26455	0.00011686	4.144	0.0018305	4.4086	0.0019474	441.72773202729275	40.539	0.20837	40.539	40.414	40.623	0					6	5	2	0	0	0	0.027866	1	3589	3589		38.806	12.01	1	62747			55983	8279	39073	39138	61374	61374					-0.00993129456242059
NSGMAFMIK	9	Unmodified	_NSGMAFMIK_					0	0	0		ENST00000492211.5_1_10:98985881-99018422:-|nuORF;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19	ENST00000492211.5_1_10:98985881-99018422:-|nuORF	ENST00000492211.5_1_10:98985881-99018422:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8165588378906	2	499.743531	997.472508	-0.25107	-0.00012547	3.616	0.0018071	3.3649	0.0016816	499.7451098104381	66.917	0.53279	66.917	66.672	67.205	0					28	11	3	0	0	0	0.024541	1	7976	7976		14.137	0	1	401470			55984	10502	39074	39139	61375	61375					-0.02632917226344489
NSGNRLTQ	8	Unmodified	_NSGNRLTQ_					0	0	0			REV__ENSG00000188694|ENST00000340345|KRTAP24-1	REV__ENSG00000188694|ENST00000340345|KRTAP24-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.7613220214844	2	445.227948	888.441343	0.18381	8.1838E-05	0.30488	0.00013574	0.48869	0.00021758	445.2279387439973	23.558	1.239	23.356	22.64	23.879	-0.20193					46	27	2	0	0	0	0.027866	1	1018	1018		35.618	8.9254	1	110980	+		55985	28055	39075	39140	61376	61376					-0.007340309445794446
NSGNRLTQ	8	Unmodified	_NSGNRLTQ_					0	0	0			REV__ENSG00000188694|ENST00000340345|KRTAP24-1	REV__ENSG00000188694|ENST00000340345|KRTAP24-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.7613220214844	2	445.227948	888.441343	-0.11996	-5.3409E-05	0.68809	0.00030636	0.56813	0.00025295	445.2282382295615	24.4	0.72784	24.185	23.778	24.506	-0.2151					26	16	2	0	0	0	0.027866	1	1018	1018		35.618	8.9254	1	84511	+		55986	28055	39075	39140	61377	61377					-0.007340309445794446
NSGNRLTQ	8	Unmodified	_NSGNRLTQ_					0	0	0			REV__ENSG00000188694|ENST00000340345|KRTAP24-1	REV__ENSG00000188694|ENST00000340345|KRTAP24-1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	445.227948	888.441343	1.9088	0.00084987	-1.6382	-0.00072937	0.27065	0.0001205	445.2270819422232	23.484	1.4086	23.292	22.296	23.705	-0.19117	-0.075933	-0.0011099	NaN	58.782	48	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262320	+		55987	28055	39075	39140							-0.007340309445794446
NSGPEEPLL	9	Unmodified	_NSGPEEPLL_					0	0	0		ENSG00000125744|ENST00000245923|RTN2;nc|ENSG00000125744|O75298-2|RTN2	ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.27703857421875	2	478.24019	954.465826	0.028016	1.3398E-05	3.9475	0.0018879	3.9756	0.0019013	478.24191946273703	75.078	0.51752	75.089	74.732	75.25	0.010376					19	12	2	0	0	0	0.024319	1	9108	9108		39.253	8.7492	1	117410			55988	4135	39076	39141	61378	61378					-0.013228155817046172
NSGPVVEKL	9	Unmodified	_NSGPVVEKL_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2458801269531	2	471.766374	941.518196	0.08158	3.8487E-05	1.6807	0.00079292	1.7623	0.0008314	471.7667025217458	22.396	0.84269	22.32	21.987	22.829	-0.075296					29	17	3	0	0	0	0.024367	1	758	758		52.937	0	1	65404			55989	9902	39077	39142	61379	61379					0.04509767551905952
NSGREGPLL	9	Unmodified	_NSGREGPLL_					0	0	0			REV__ENST00000451025.6_2_6:43608345-43608465:+|nuORF	REV__ENST00000451025.6_2_6:43608345-43608465:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.77728271484375	2	471.753798	941.493044	-0.10748	-5.0705E-05	-0.43274	-0.00020415	-0.54023	-0.00025485	471.75351387498586	28.594	0.67802	28.59	28.286	28.964	-0.0042019					37	15	3	0	0	0	0.024017	1	1718	1718		65.465	6.6834	1	835240	+		55990	32716	39078	39143	61380	61380					0.019957127493512417
NSGRLASELN	10	Unmodified	_NSGRLASELN_					0	0	0		nc|ENSG00000290966|A6NCN2|KRT87P	nc|ENSG00000290966|A6NCN2|KRT87P	nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.808349609375	2	530.772719	1059.53089	-0.69009	-0.00036628	-4.1041	-0.0021784	-4.7942	-0.0025446	530.7707808168883	72.7	0.77334	72.7	72.373	73.146	0					39	18	4	0	0	0	0.03519	1	8914	8914		23.523	0	1	109030		+	55991	18834	39079	39144	61381	61381					0.0035017894417705975
NSGVRQAV	8	Unmodified	_NSGVRQAV_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;ENST00000556588.5_1_14:74425667-74425790:+|nuORF;ENST00000553448.1_1_14:74425667-74426246:+|nuORF	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.7281494140625	2	415.727584	829.440614	-0.24466	-0.00010171	2.1563	0.00089641	1.9116	0.0007947	415.7283727920647	17.645	0.44872	17.439	17.265	17.714	-0.20669					17	8	3	0	0	0	1.0516	1	198	198		29.15	0	1	138110			55992	3762	39080	39145	61382	61382					0.019071744063808183
NSGYKVKLF	9	Unmodified	_NSGYKVKLF_					0	0	0		ENSG00000158023|ENST00000288912|CFAP251;ENST00000545752.1_1_12:122399919-122407612:+|nuORF;nc|ENSG00000158023|Q8TBY9-2|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7673950195312	2	528.297842	1054.58113	-1.0281	-0.00054312	-2.6788	-0.0014152	-3.7069	-0.0019583	528.2960727300397	22.463	0.78836	22.463	22.152	22.94	0					35	16	3	0	0	0	0.024541	1	842	842		17.365	0	1	128170			55993	6640	39081	39146	61383	61383					0.056023333399252806
NSHAFWNL	8	Unmodified	_NSHAFWNL_					0	0	0		ENST00000327490.7_1_17:74266941-74267184:+|nuORF	ENST00000327490.7_1_17:74266941-74267184:+|nuORF	ENST00000327490.7_1_17:74266941-74267184:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7503967285156	2	494.735409	987.456264	-0.17627	-8.7206E-05	1.4433	0.00071406	1.2671	0.00062686	494.7363024036783	45.417	0.20444	45.461	45.409	45.614	0.043877					8	5	2	0	0	0	0.027866	1	4367	4367		37.159	22.495	1	156110			55994	12295	39082	39147	61384	61384					-0.03796539076586214
NSHSSSFF	8	Unmodified	_NSHSSSFF_					0	0	0		ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.695949	911.377345	-0.29267	-0.00013366	0.41281	0.00018853	0.12014	5.4868E-05	456.69655960287537	23.187	0.38534	23.126	22.844	23.229	-0.060862					11	8	2	0	0	0	0.027866	1	865	865		47.916	13.743	1	15811			55995	17386	39083	39148	61385	61385					-0.08188811101513238
NSIARLLSS	9	Unmodified	_NSIARLLSS_					0	0	0			REV__ENST00000471962.1_1_20:60773737-60775066:+|nuORF	REV__ENST00000471962.1_1_20:60773737-60775066:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.73248291015625	2	480.777274	959.539994	0.094661	4.5511E-05	1.5705	0.00075504	1.6651	0.00080056	480.77868922320107	57.021	0.34619	57.021	56.841	57.187	0					14	9	2	0	0	0	0.024418	1	6421	6421		37.812	15.852	1	146460	+		55996	21192	39084	39149	61386	61386					0.0586057230049164
NSIEIVMAQ	9	Unmodified	_NSIEIVMAQ_					0	0	0			REV__ENST00000486056.1_1_9:35733177-35736720:+|nuORF	REV__ENST00000486056.1_1_9:35733177-35736720:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.29229736328125	2	502.757692	1003.50083	-0.069326	-3.4854E-05	0.11585	5.8246E-05	0.046526	2.3391E-05	502.75725975709565	39.268	1.6294	39.268	38.395	40.024	0					95	44	3	0	0	0	0.0242	1	3335	3335		79.713	16.406	1	1331000	+		55997	21656	39085	39150	61387	61387					-0.0007789604541130757
NSIGESLSSQY	11	Unmodified	_NSIGESLSSQY_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.7769165039062	2	592.775125	1183.5357	-0.93866	-0.00055642	4.3619	0.0025856	3.4232	0.0020292	592.7776581410683	81.327	1.3512	81.184	80.776	82.127	-0.14248					67	31	4	0	0	0	0.42031	2	9759	9759;9771		81.525	1.8124	1	723000			55998	7284	39086	39151	61388;61389	61388					-0.048729817037155954
NSIGESLSSQY	11	Unmodified	_NSIGESLSSQY_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	592.775125	1183.5357	-1.828	-0.0010836	5.4503	0.0032308	3.6222	0.0021472	592.7781254571015	80.825	0.4774	80.825	80.5	80.978	0	-0.19227	0.0015414	NaN	81.525	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107210			55999	7284	39086	39151							-0.048729817037155954
NSIGESLSSQY	11	Unmodified	_NSIGESLSSQY_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	592.775125	1183.5357	-0.78212	-0.00046362	3.8769	0.0022981	3.0948	0.0018345	592.7774541995425	80.748	0.81224	80.772	80.234	81.046	0.023903	-0.24516	-0.00032394	NaN	81.525	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183720			56000	7284	39086	39151							-0.048729817037155954
NSIIILAPM	9	Unmodified	_NSIIILAPM_					0	0	0			REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	REV__nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2952880859375	2	486.283346	970.552139	1.6462	0.00080052	0.098292	4.7798E-05	1.7445	0.00084832	486.2844027223711	24.926	0.35004	24.754	24.599	24.95	-0.17151					10	7	2	0	0	0	0.024412	1	1120	1120		24.203	0	1	26714	+		56001	24901	39087	39152	61390	61390					0.06568472719300189
NSIKELNERW	10	Unmodified	_NSIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	430.2259826660156	3	430.226326	1287.65715	-0.34153	-0.00014693	-0.021156	-9.1018E-06	-0.36268	-0.00015604	430.22629992393	45.106	0.74783	45.007	44.71	45.458	-0.099449					62	20	4	0	0	0	0.51239	3	4266	4243;4254;4266		86.882	38.28	1	4508500			56002	10033	39088	39153	61391;61392;61393	61393					0.02482685449422206
NSIKELNERW	10	Unmodified	_NSIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.2264404296875	3	430.226326	1287.65715	0.15526	6.6797E-05	-0.42295	-0.00018196	-0.26769	-0.00011517	430.226127216972	45.362	0.99949	45.109	44.786	45.786	-0.25252					69	27	4	0	0	0	0.5013	3	4277	4267;4277;4290		88.134	37.342	1	5104400			56003	10033	39088	39153	61394;61395;61396	61395					0.02482685449422206
NSIKELNERW	10	Unmodified	_NSIKELNERW_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.22674560546875	3	430.226326	1287.65715	-0.037154	-1.5985E-05	-0.032915	-1.4161E-05	-0.070069	-3.0146E-05	430.22633336238175	45.341	1.0521	45.13	44.831	45.883	-0.21109					74	29	4	0	0	0	0.75813	1	4273	4273		63.426	29.34	1	4887200			56004	10033	39088	39153	61397	61397					0.02482685449422206
NSIKLTSVV	9	Unmodified	_NSIKLTSVV_					0	0	0		ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7734069824219	2	480.78985	959.565146	0.35879	0.0001725	3.0542	0.0014684	3.413	0.0016409	480.7911247803883	93.316	0.63462	93.316	92.967	93.602	0					22	14	2	0	0	0	0.024466	1	11866	11866		31.53	14.165	1	79922			56005	8101	39089	39154	61398	61398					0.0837462710304635
NSILRQLL	8	Unmodified	_NSILRQLL_					0	0	0			REV__ENSG00000284024|ENST00000640019|MSANTD7	REV__ENSG00000284024|ENST00000640019|MSANTD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	478.798009	955.581465	-0.66009	-0.00031605	0.87106	0.00041706	0.21096	0.00010101	478.798053459376	28.463	0.50832	28.294	28.089	28.598	-0.16897					17	11	2	0	0	0	0.027866	1	1693	1693		21.96	3.6355	1	138290	+		56006	29251	39090	39155	61399	61399					0.10189753059808027
NSILRQLL	8	Unmodified	_NSILRQLL_					0	0	0			REV__ENSG00000284024|ENST00000640019|MSANTD7	REV__ENSG00000284024|ENST00000640019|MSANTD7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.798009	955.581465	-0.85007	-0.00040701	1.157	0.00055398	0.30694	0.00014696	478.7983066566546	28.575	0.54316	28.329	28.121	28.665	-0.24524	0.017627	0.00014631	NaN	21.96	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174520	+		56007	29251	39090	39155							0.10189753059808027
NSIMLFELAF	10	Unmodified	_NSIMLFELAF_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.7725219726562	2	592.804642	1183.59473	-1.1554	-0.0006849	2.3431	0.001389	1.1878	0.00070411	592.8054383769129	43.062	0.64922	42.836	42.484	43.133	-0.22597					25	16	2	0	0	0	0.03519	1	3924	3924		26.693	0	1	245040	+		56008	27003	39091	39156	61400	61400					0.010278230568701474
NSIMLFELAF	10	Unmodified	_NSIMLFELAF_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.804642	1183.59473	-0.64513	-0.00038243	3.7432	0.002219	3.0981	0.0018366	592.8071579694252	42.947	0.31282	42.835	42.614	42.927	-0.11253	0.01791	0.00046663	NaN	26.693	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261910	+		56009	27003	39091	39156							0.010278230568701474
NSIMLFELAF	10	Unmodified	_NSIMLFELAF_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.804642	1183.59473	-1.0146	-0.00060147	3.3261	0.0019717	2.3115	0.0013703	592.8062168128562	43.017	0.50013	42.78	42.561	43.061	-0.23736	-0.037101	-2.7914E-05	NaN	26.693	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283230	+		56010	27003	39091	39156							0.010278230568701474
NSIQRRIL	8	Unmodified	_NSIQRRIL_					0	0	0			REV__nc|ENSG00000143921|Q9H221-2|ABCG8	REV__nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2919006347656	2	500.306532	998.598512	-0.60442	-0.0003024	3.3379	0.00167	2.7335	0.0013676	500.3078635476533	55.988	1.2196	56.085	55.598	56.818	0.097893					65	33	3	0	0	0	0.027866	1	6082	6082		40.778	18.818	1	1628600	+		56011	24297	39092	39157	61401	61401					0.0991567366562549
NSIRVKPE	8	Unmodified	_NSIRVKPE_					0	0	0			REV__ENST00000467329.5_1_1:150300781-150316915:+|nuORF	REV__ENST00000467329.5_1_1:150300781-150316915:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7555236816406	2	471.771991	941.529429	0.40462	0.00019089	-1.553	-0.00073267	-1.1484	-0.00054179	471.77115912582036	42.754	0.577	42.615	42.379	42.956	-0.13929					25	15	2	0	0	0	0.027866	1	3980	3980		42.396	3.1433	1	260550	+		56012	22340	39093	39158	61402	61402					0.05632589646052111
NSISNAEI	8	Unmodified	_NSISNAEI_					0	0	0			REV__nc|ENSG00000125885|Q9UJA3-2|MCM8	REV__nc|ENSG00000125885|Q9UJA3-2|MCM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.7344055175781	2	424.211432	846.408311	-0.40152	-0.00017033	0.97313	0.00041281	0.57161	0.00024248	424.2117844360575	37.433	0.56993	37.433	37.233	37.803	0					31	15	3	0	0	0	0.027866	1	3056	3056		38.806	6.8513	1	273860	+		56013	22858	39094	39159	61403	61403					-0.021036577872905582
NSITLSTLP	9	Unmodified	_NSITLSTLP_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7741394042969	2	473.266207	944.517862	-0.94206	-0.00044584	1.2297	0.00058197	0.28764	0.00013613	473.2665341976303	37.368	0.4262	37.149	36.885	37.311	-0.2195					12	10	2	0	0	0	0.024405	1	2963	2963		35.618	14.671	1	102820	+		56014	24824	39095	39160	61404	61404					0.04338347832049294
NSITLSTLP	9	Unmodified	_NSITLSTLP_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.266207	944.517862	0.33961	0.00016073	1.0706	0.00050669	1.4102	0.00066741	473.26663014437395	37.377	0.3106	37.184	37.039	37.35	-0.193	0.017715	-4.7129E-05	NaN	56.721	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54485	+		56015	24824	39095	39160							0.04338347832049294
NSIVENVNMNT	11	Unmodified	_NSIVENVNMNT_					0	0	0			REV__ENSG00000091483|ENST00000366560|FH	REV__ENSG00000091483|ENST00000366560|FH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.7399597167969	3	412.195927	1233.56595	-0.56976	-0.00023485	3.8999	0.0016075	3.3301	0.0013727	412.19602105489105	43.213	0.11278	42.987	42.912	43.025	-0.22597					4	2	2	0	0	0	0.024746	1	3925	3925		11.455	0	1	32454	+		56016	20909	39096	39161	61405	61405					-0.04148946310192514
NSIWLPLN	8	Unmodified	_NSIWLPLN_					0	0	0			REV__ENST00000429911.5_3_7:7273964-7274030:+|nuORF	REV__ENST00000429911.5_3_7:7273964-7274030:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7843322753906	2	478.763635	955.512717	-0.043144	-2.0656E-05	1.1814	0.00056559	1.1382	0.00054493	478.76355173760214	67.295	0.76444	67.006	66.665	67.429	-0.28835					30	18	2	0	0	0	0.027866	1	8029	8029		16.473	3.514	1	237470	+		56017	32346	39097	39162	61406	61406					0.033180887601020004
NSKAPAPVTY	10	Unmodified	_NSKAPAPVTY_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2560424804688	2	524.277106	1046.53966	-0.15106	-7.9197E-05	-3.0553	-0.0016018	-3.2064	-0.001681	524.2756976869987	46.174	0.7356	46.077	45.632	46.368	-0.096653					26	19	2	0	0	0	0.03519	1	4384	4384		28.081	11.608	1	171010			56018	1164	39098	39163	61407	61407					0.01825152580613576
NSKCLLKT	8	Unmodified	_NSKCLLKT_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.2686462402344	2	453.757495	905.500437	-0.42514	-0.00019291	-2.8462	-0.0012915	-3.2713	-0.0014844	453.7561172377788	25.808	0.54078	25.581	25.271	25.812	-0.22683					29	12	3	0	0	0	0.027866	1	1240	1240		47.657	0	1	304810			56019	10603	39099	39164	61408	61408					0.04390729025408291
NSKEAGEEPL	10	Unmodified	_NSKEAGEEPL_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.769775390625	2	537.259111	1072.50367	-0.21103	-0.00011338	-0.047313	-2.5419E-05	-0.25834	-0.0001388	537.2593402031092	87.221	0.8364	87.186	86.817	87.654	-0.035355					35	19	3	0	0	0	0.03519	1	10936	10936		56.434	18.622	1	200670	+		56020	36443	39100	39165	61409	61409					-0.029683493869015365
NSKFYKLV	8	Unmodified	_NSKFYKLV_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7161865234375	2	499.78711	997.559667	-0.030266	-1.5127E-05	3.7172	0.0018578	3.687	0.0018427	499.7886547086754	71.258	0.54293	71.001	70.784	71.327	-0.25713					28	12	3	0	0	0	0.027866	1	8328	8328		44.117	13.613	1	472270			56021	9145	39101	39166	61410	61410					0.060789483112330345
NSKGILQV	8	Unmodified	_NSKGILQV_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.18658447265625	2	429.75581	857.497067	0.13001	5.5872E-05	1.6178	0.00069526	1.7478	0.00075113	429.7564461589807	24.992	0.35289	24.817	24.598	24.95	-0.17484					11	7	2	0	0	0	0.027866	1	1114	1114		29.15	1.2673	1	41624			56022	5132	39102	39167	61411	61411					0.06261802243034253
NSKGILQV	8	Unmodified	_NSKGILQV_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	429.75581	857.497067	1.5717	0.00067545	0.26113	0.00011222	1.8328	0.00078767	429.7557217041846	25.034	0.34978	24.863	24.643	24.993	-0.17151	0.049648	-0.0010918	NaN	29.15	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66367			56023	5132	39102	39167							0.06261802243034253
NSKHLLSVV	9	Unmodified	_NSKHLLSVV_					0	0	0		ENST00000377304.6_1_10:18834706-18834850:-|nuORF	ENST00000377304.6_1_10:18834706-18834850:-|nuORF	ENST00000377304.6_1_10:18834706-18834850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.60418701171875	2	498.795466	995.57638	0.21252	0.000106	-0.56716	-0.00028289	-0.35464	-0.00017689	498.7951927795301	56.477	0.35237	56.261	56.038	56.39	-0.21607					11	8	2	0	0	0	0.024466	1	6089	6089		39.253	11.371	1	183060			56024	13202	39103	39168	61412	61412					0.07841449197189831
NSKHLLSVV	9	Unmodified	_NSKHLLSVV_					0	0	0		ENST00000377304.6_1_10:18834706-18834850:-|nuORF	ENST00000377304.6_1_10:18834706-18834850:-|nuORF	ENST00000377304.6_1_10:18834706-18834850:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.795466	995.57638	-0.06076	-3.0307E-05	-0.07122	-3.5524E-05	-0.13198	-6.5831E-05	498.7953734720971	56.279	0.68006	56.279	55.963	56.643	0	0.013487	-0.00016542	NaN	31.53	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2345000			56025	13202	39103	39168							0.07841449197189831
NSKHLLSVV	9	Unmodified	_NSKHLLSVV_					0	0	0		ENST00000377304.6_1_10:18834706-18834850:-|nuORF	ENST00000377304.6_1_10:18834706-18834850:-|nuORF	ENST00000377304.6_1_10:18834706-18834850:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	498.795466	995.57638	-0.53034	-0.00026453	0.30849	0.00015387	-0.22185	-0.00011066	498.7956228714122	56.151	0.72137	56.249	55.965	56.686	0.097897	-0.016733	0.00021337	NaN	31.53	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2121100			56026	13202	39103	39168							0.07841449197189831
NSKHNFVKG	9	Unmodified	_NSKHNFVKG_					0	0	0			REV__nc|ENSG00000167562|Q9NV72|ZNF701	REV__nc|ENSG00000167562|Q9NV72|ZNF701	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8005981445312	2	515.775065	1029.53558	-0.46138	-0.00023797	-0.57651	-0.00029735	-1.0379	-0.00053532	515.7747283392533	66.683	0.48122	66.683	66.487	66.968	0					31	11	3	0	0	0	0.024541	1	7913	7913		7.1934	0.45781	1	2069600	+		56027	36896	39104	39169	61413	61413					0.021991078775727146
NSKILLVL	8	Unmodified	_NSKILLVL_					0	0	0		nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR;TSHR|p.V656A|1|0.27|ENSG00000165409|chr14:81144025-81144025|T/C|missense_variant	nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.74127197265625	2	450.299853	898.585153	-1.223	-0.0005507	1.3058	0.00058801	0.082856	3.731E-05	450.3003044847002	40.906	1.2277	40.676	39.93	41.157	-0.23029					55	32	3	0	0	0	0.027866	1	3451	3451		23.042	0	1	791300			56028	7411	39105	39170	61414	61414					0.13180422833659122
NSKIPGNQI	9	Unmodified	_NSKIPGNQI_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7886962890625	2	485.769448	969.524344	-0.096255	-4.6758E-05	-0.027438	-1.3329E-05	-0.12369	-6.0086E-05	485.7694159812467	46.911	0.90826	46.911	46.273	47.181	0					38	24	2	0	0	0	0.022587	1	4682	4682		74.255	10.048	1	2176500	+		56029	24874	39106	39171	61415	61415					0.03836285783427229
NSKIPGNQI	9	Unmodified	_NSKIPGNQI_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.76702880859375	2	485.769448	969.524344	-0.74427	-0.00036154	0.71011	0.00034495	-0.034158	-1.6593E-05	485.76970121702897	46.918	1.1736	46.977	46.316	47.489	0.059097					50	32	2	0	0	0	0.45795	1	4598	4598		62.107	4.2961	1	2109700	+		56030	24874	39106	39171	61416	61416					0.03836285783427229
NSKITDLF	8	Unmodified	_NSKITDLF_					0	0	0			REV__nc|ENSG00000182054|P48735-2|IDH2	REV__nc|ENSG00000182054|P48735-2|IDH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.76678466796875	2	469.2531	936.491647	0.16866	7.9145E-05	1.2081	0.00056692	1.3768	0.00064606	469.25316922248675	35.387	0.46584	35.431	35.192	35.658	0.04406					25	11	3	0	0	0	0.027866	1	2639	2639		7.1934	0	1	288380	+		56031	27446	39107	39172	61417	61417					0.020860786605680914
NSKKKPSNK	9	Unmodified	_NSKKKPSNK_					0	0	0		nc|ENSG00000107949|Q9P287-2|BCCIP;nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP	nc|ENSG00000107949|Q9P287-2|BCCIP;ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2883911132812	2	515.803823	1029.59309	-0.75146	-0.00038761	3.3416	0.0017236	2.5901	0.001336	515.805368917811	40.226	0.61158	39.996	39.585	40.197	-0.23021					18	15	2	0	0	0	0.024261	1	3442	3442		37.812	15.852	1	434670			56032	18162;2870	39108	39173	61418	61418					0.07947950083121214
NSKKKVAL	8	Unmodified	_NSKKKVAL_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.2875671386719	2	444.287277	886.560001	0.84491	0.00037538	-0.90011	-0.00039991	-0.055196	-2.4523E-05	444.28695010005066	18.182	1.531	18.026	17.805	19.336	-0.15637					73	30	6	0	0	0	0.34573	2	280	268;280		104.75	33.451	1	6591200			56033	11061	39109	39174	61419;61420	61420					0.11218368031074988
NSKKKVAL	8	Unmodified	_NSKKKVAL_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.2875061035156	2	444.287277	886.560001	-0.010584	-4.7023E-06	0.042082	1.8696E-05	0.031498	1.3994E-05	444.2872652980834	18.193	0.94096	17.99	17.767	18.708	-0.20371					39	18	5	0	0	0	0.6536	1	267	267		71.296	25.344	1	2105200			56034	11061	39109	39174	61421	61421					0.11218368031074988
NSKKKVAL	8	Unmodified	_NSKKKVAL_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	444.287277	886.560001	3.7403	0.0016618	-3.528	-0.0015674	0.21233	9.4333E-05	444.285598841994	18.192	0.29805	17.949	17.776	18.074	-0.24256	-0.039059	-0.0025778	NaN	104.75	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46092			56035	11061	39109	39174							0.11218368031074988
NSKLRRDI	8	Unmodified	_NSKLRRDI_					0	0	0			REV__ENST00000555267.1_1_14:90866417-90870426:+|nuORF	REV__ENST00000555267.1_1_14:90866417-90870426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3076477050781	2	501.296165	1000.57778	-0.34231	-0.0001716	2.9517	0.0014797	2.6093	0.0013081	501.29741191331516	72.995	0.62867	72.995	72.698	73.327	0					29	15	3	0	0	0	0.027866	1	8878	8878		60.118	14.146	1	195320	+		56036	35007	39110	39175	61422	61422					0.07751083285938876
NSKLTLKNK	9	Unmodified	_NSKLTLKNK_					0	0	0		ENST00000469300.6_1_2:128396858-128397856:-|nuORF;nc|ENSG00000072163|Q7Z4I7-4|LIMS2;ENST00000484252.5_1_2:128396858-128398238:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2	ENST00000469300.6_1_2:128396858-128397856:-|nuORF	ENST00000469300.6_1_2:128396858-128397856:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3232421875	2	523.321848	1044.62914	-0.016974	-8.8831E-06	3.0494	0.0015958	3.0324	0.0015869	523.3233662662817	67.266	1.3389	67.29	66.942	68.281	0.023911					93	33	5	0	0	0	0.35556	1	7975	7975		68.846	4.6389	1	12746000			56037	1470	39111	39176	61423	61423					0.10861407259972111
NSKQTKLL	8	Unmodified	_NSKQTKLL_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1;ENST00000517561.1_1_5:77417682-77436990:-|nuORF;nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENST00000543938.5_1_15:83328314-83349061:-|nuORF	ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000103723|Q13367-3|AP3B2	ENSG00000132842|ENST00000255194|AP3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.7379150390625	2	466.282192	930.549831	-0.48722	-0.00022718	-0.059318	-2.7659E-05	-0.54654	-0.00025484	466.28208623048073	45.223	0.58315	45.074	44.763	45.346	-0.1488					44	16	4	0	0	0	0.027866	1	4353	4353		71.296	7.0884	1	1549700			56038	4657;2525	39112	39177	61424	61424					0.08177760305852644
NSKRIETST	9	Unmodified	_NSKRIETST_					0	0	0			REV__nc|ENSG00000073711|Q06190-3|PPP2R3A	REV__nc|ENSG00000073711|Q06190-3|PPP2R3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2771606445312	2	518.275095	1034.53564	-0.60969	-0.00031599	-4.3315	-0.0022449	-4.9412	-0.0025609	518.2728443448033	61.673	0.90108	61.673	61.108	62.009	0					22	12	2	0	0	0	0.024477	1	7197	7197		27.882	3.6795	1	456630	+		56039	20506	39113	39178	61425	61425					0.019750630869111774
NSKRKAETW	9	Unmodified	_NSKRKAETW_					0	0	0		nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38;ENST00000536093.5_3_12:27468169-27475385:+|nuORF	nc|ENSG00000211455|Q9Y2H1-2|STK38L	nc|ENSG00000211455|Q9Y2H1-2|STK38L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.2986450195312	2	560.298904	1118.58326	0.63244	0.00035435	-1.0499	-0.00058824	-0.41743	-0.00023389	560.2984012798627	19.266	0.74295	19.066	18.612	19.355	-0.2001					37	14	3	0	0	0	0.54416	1	411	411		56.434	8.4743	1	926210			56040	3169	39114	39179	61426	61426					0.028707620777595366
NSKRRIAV	8	Unmodified	_NSKRRIAV_					0	0	0			REV__ENSG00000139132|ENST00000534526|FGD4	REV__ENSG00000139132|ENST00000534526|FGD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.7483825683594	2	472.293425	942.572297	0.15761	7.444E-05	2.6845	0.0012679	2.8421	0.0013423	472.29460208231336	50.174	0.63633	49.895	49.584	50.221	-0.27977					27	16	2	0	0	0	0.027866	1	5039	5039		37.159	18.835	1	1640100	+		56041	23916	39115	39180	61427	61427					0.0987140449412891
NSKSRVLTL	9	Unmodified	_NSKSRVLTL_					0	0	0		chr6:75106496-75106635|121|15.31|0.12|7.01|-|1|COL12A1,None|1	chr6:75106496-75106635|121|15.31|0.12|7.01|-|1|COL12A1,None|1	chr6:75106496-75106635|121|15.31|0.12|7.01|-|1|COL12A1,None|1	MSMS	OPSCC_39_ClassI_Rep-1	1	509.30999755859375	2	509.306198	1016.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.871	1	97.871	97.371	98.371	0								0	0	0	0.64798	1	12492	12492		31.53	0	1				56042	413	39116	39181	61428	61428					0.09020834225896124
NSKSSWLMV	9	Unmodified	_NSKSSWLMV_					0	0	0		ENSG00000186886|ENST00000641440|OR5D3P	ENSG00000186886|ENST00000641440|OR5D3P	ENSG00000186886|ENST00000641440|OR5D3P	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2628173828125	2	526.265684	1050.51682	-0.64669	-0.00034033	-3.4596	-0.0018207	-4.1063	-0.002161	526.2629032624011	55.827	1.5008	55.925	55.115	56.616	0.097893					138	40	5	0	0	0	0.4752	1	6096	6096		60.972	4.2509	1	4077300			56043	9587	39117	39182	61429	61429					-0.00642189808513649
NSKVKHKK	8	Unmodified	_NSKVKHKK_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7616882324219	2	484.803626	967.592698	0.94586	0.00045855	-0.74097	-0.00035922	0.20489	9.9332E-05	484.80309444259575	37.315	0.52688	37.315	36.887	37.414	0					20	13	2	0	0	0	0.027866	1	3007	3007		18.324	0	1	154490			56044	7343	39118	39183	61430	61430					0.10760575153949503
NSLCRKHL	8	Unmodified	_NSLCRKHL_					0	0	0			REV__ENST00000391971.6_1_2:242255343-242265426:+|nuORF	REV__ENST00000391971.6_1_2:242255343-242265426:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.74310302734375	2	485.766186	969.517819	-0.10382	-5.0434E-05	4.2382	0.0020588	4.1344	0.0020083	485.76895466492044	41.792	0.46666	41.669	41.421	41.888	-0.12299					19	12	2	0	0	0	0.027866	1	3733	3733		29.15	0	1	123950	+		56045	31590	39119	39184	61431	61431					0.0318406935106168
NSLEERIRQ	9	Unmodified	_NSLEERIRQ_					0	0	0		ENSG00000180071|ENST00000399703|ANKRD18A	ENSG00000180071|ENST00000399703|ANKRD18A	ENSG00000180071|ENST00000399703|ANKRD18A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.8096313476562	2	572.807094	1143.59963	-0.47404	-0.00027153	2.7793	0.001592	2.3053	0.0013205	572.808336341964	105.75	0.43129	105.75	105.49	105.92	0.00014496					19	15	2	0	0	0	0.85329	1	13502	13502		35.618	1.4457	1	45988			56046	8958	39120	39185	61432	61432					0.03357843243838943
NSLEPQTTV	9	Unmodified	_NSLEPQTTV_					0	0	0		ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000148660|Q13555-9|CAMK2G	ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000148660|Q13555-9|CAMK2G	nc|ENSG00000148660|Q13555-9|CAMK2G	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.75067138671875	2	494.750921	987.48729	0.0043124	2.1336E-06	-0.51333	-0.00025397	-0.50902	-0.00025184	494.7506803403842	45.458	0.80534	45.458	45.147	45.953	0					80	23	5	0	0	0	0.37611	1	4461	4461		67.494	6.5217	1	29563000			56047	18371;15023	39121	39186	61433	61433					-0.0069543055299163825
NSLIKANMT	9	Unmodified	_NSLIKANMT_					0	0	0			REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7979736328125	2	496.265684	990.516816	-0.022002	-1.0919E-05	-0.75959	-0.00037696	-0.78159	-0.00038788	496.2649562602152	34.091	0.42846	34.087	33.869	34.298	-0.0045624					17	10	2	0	0	0	0.024477	1	2494	2494		9.7057	0	1	93593	+		56048	22003	39122	39187	61434	61434					0.021178101914983927
NSLKHLQIV	9	Unmodified	_NSLKHLQIV_					0	0	0		ENST00000286800.7_1_21:30715464-30715563:+|nuORF	ENST00000286800.7_1_21:30715464-30715563:+|nuORF	ENST00000286800.7_1_21:30715464-30715563:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.279541015625	2	526.316566	1050.61858	-1.4255	-0.00075025	0.97277	0.00051199	-0.4527	-0.00023826	526.3168404424944	44.364	0.46494	44.22	43.994	44.459	-0.14471					24	13	2	0	0	0	0.024447	1	4172	4172		40.778	10.275	1	327670			56049	11761	39123	39188	61435	61435					0.09529424605557324
NSLLCSTSLK	10	Unmodified	_NSLLCSTSLK_					0	0	0			REV__ENST00000267102.12_1_12:49491875-49494363:-|nuORF	REV__ENST00000267102.12_1_12:49491875-49494363:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.255126953125	2	533.284074	1064.5536	-1.3853	-0.00073875	-3.3386	-0.0017804	-4.7239	-0.0025192	533.2817213182624	38.936	0.30765	38.772	38.59	38.898	-0.16459					11	8	2	0	0	0	0.03519	1	3242	3242		25.126	0.6068	1	134400	+		56050	29767	39124	39189	61436	61436					0.02390062017411765
NSLLFPPAR	9	Unmodified	_NSLLFPPAR_					0	0	0		nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2;ENST00000558588.5_1_15:40583969-40599873:-|nuORF	nc|ENSG00000137841|Q00722-3|PLCB2	nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8184814453125	2	507.790184	1013.56581	0.25216	0.00012805	-0.082964	-4.2129E-05	0.1692	8.5918E-05	507.7897035953269	68.469	0.63824	68.226	67.909	68.548	-0.24278					35	15	3	0	0	0	0.023635	1	7950	7950		56.721	5.3856	1	628760			56051	5166	39125	39190	61437	61437					0.05957466542747625
NSLLLPNL	8	Unmodified	_NSLLLPNL_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.75579833984375	2	442.26601	882.517468	-0.036492	-1.6139E-05	1.3862	0.00061306	1.3497	0.00059692	442.2664700043479	45.383	0.60742	45.427	45.18	45.787	0.043877					24	17	2	0	0	0	0.027866	1	4310	4310		47.657	0	1	394390	+		56052	27091	39126	39191	61438	61438					0.07150972902854846
NSLLRDLT	8	Unmodified	_NSLLRDLT_					0	0	0		nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.28948974609375	2	466.263999	930.513445	-0.8045	-0.00037511	1.6078	0.00074965	0.80328	0.00037454	466.2634772840249	75.824	0.18633	75.824	75.769	75.956	0					6	4	2	0	0	0	0.027866	1	9332	9332		13.454	0.49486	1	34080			56053	6315	39127	39192	61439	61439					0.04540883409140406
NSLMKKLQHL	10	Unmodified	_NSLMKKLQHL_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.57061767578125	3	404.569147	1210.68561	-0.04956	-2.0051E-05	3.3893	0.0013712	3.3397	0.0013511	404.570475625524	30.18	0.94308	30.18	29.895	30.838	0					63	22	4	0	0	0	1.0816	1	1919	1919		35.152	6.5753	1	2144900			56054	8012	39128	39193	61440	61440					0.08869711825013837
NSLSFLSVF	9	Unmodified	_NSLSFLSVF_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.27716064453125	2	507.26875	1012.52295	-0.44879	-0.00022766	-0.34869	-0.00017688	-0.79748	-0.00040454	507.2690175997477	57.096	0.53873	56.928	56.714	57.253	-0.1672					26	14	3	0	0	0	0.024374	1	6242	6242		32.812	0	1	368280			56055	4597	39129	39194	61441	61441					0.017186516946708252
NSLTFKKSLD	10	Unmodified	_NSLTFKKSLD_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.7700805664062	2	576.816596	1151.61864	0.48694	0.00028088	0.074353	4.2888E-05	0.5613	0.00032376	576.8161724002999	51.7	0.62824	51.516	51.298	51.927	-0.18404					27	16	3	0	0	0	0.03519	1	5332	5332		45.022	0	1	408410			56056	4388	39130	39195	61442	61442					0.04889379814903805
NSLVAHTK	8	Unmodified	_NSLVAHTK_					0	0	0		nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7802429199219	2	435.245609	868.476666	-0.44395	-0.00019323	1.6598	0.0007224	1.2158	0.00052918	435.2461200469484	39.819	0.74261	39.843	39.421	40.163	0.023727					49	20	4	0	0	0	0.027866	1	3440	3440		21.96	4.5949	1	815520			56057	18786	39131	39196	61443	61443					0.037166315832337204
NSLVAHTK	8	Unmodified	_NSLVAHTK_					0	0	0		nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	nc|ENSG00000265992|Q1W209|ESRG	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.245609	868.476666	0.58281	0.00025366	0.16586	7.2189E-05	0.74866	0.00032585	435.24547669813813	39.623	0.66249	39.623	39.288	39.951	0	-0.049053	-0.00080493	NaN	21.96	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835710			56058	18786	39131	39196							0.037166315832337204
NSLVQWQLI	9	Unmodified	_NSLVQWQLI_					0	0	0			REV__CON__P02668	REV__CON__P02668	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.8036499023438	2	550.808574	1099.60259	-0.52562	-0.00028951	2.5393	0.0013986	2.0136	0.0011091	550.8090187976408	57.926	1.0951	57.749	56.922	58.017	-0.17776					39	28	2	0	0	0	0.0245	1	6296	6296		36.447	0	1	1328500	+	+	56059	19539	39132	39197	61444	61444					0.05677718368656315
NSLWCIIL	8	Unmodified	_NSLWCIIL_					0	0	0			REV__ENSG00000101850|ENST00000467482|GPR143	REV__ENSG00000101850|ENST00000467482|GPR143	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2920837402344	2	481.262413	960.510274	-0.10344	-4.9783E-05	2.8969	0.0013942	2.7935	0.0013444	481.26383791779506	65.516	0.67223	65.554	65.187	65.859	0.037384					35	18	3	0	0	0	0.027866	1	7627	7627		42.474	0	1	666850	+		56060	21259	39133	39198	61445	61445					0.02843917030781995
NSLYMASR	8	Unmodified	_NSLYMASR_					0	0	0			REV__ENSG00000226761|ENST00000533467|TAS2R46	REV__ENSG00000226761|ENST00000533467|TAS2R46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2651062011719	2	471.229102	940.443651	-0.22756	-0.00010723	-3.0868	-0.0014546	-3.3143	-0.0015618	471.2274991141106	33.674	0.65764	33.474	33.209	33.866	-0.20019					41	16	4	0	0	0	0.027866	1	2389	2389		25.574	0	1	1712600	+		56061	28877	39134	39199	61446	61446					-0.02895318531113844
NSLYTLKF	8	Unmodified	_NSLYTLKF_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7845764160156	2	493.271293	984.528032	-0.29278	-0.00014442	1.724	0.0008504	1.4312	0.00070598	493.2727037372969	46.956	0.13635	46.762	46.678	46.814	-0.19387					5	3	2	0	0	0	0.027866	1	4551	4551		17.365	0	1	59333	+		56062	22458	39135	39200	61447	61447					0.03514955557295707
NSMKENLGR	9	Unmodified	_NSMKENLGR_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7439575195312	2	524.76384	1047.51313	-0.27899	-0.00014641	-4.2917	-0.0022521	-4.5707	-0.0023985	524.7618676895323	39.946	0.38667	39.721	39.541	39.928	-0.225					21	9	3	0	0	0	0.024418	1	3432	3432		23.523	0	1	120270	+		56063	19837	39136	39201	61448	61448					-0.008728595823413343
NSMPSLNW	8	Unmodified	_NSMPSLNW_					0	0	0		KIF16B|p.Q697Pfs*51|1|0.06|ENSG00000089177|chr20:16379900-16379912|GTCTCTTCTTCTT/-|frameshift_variant	KIF16B|p.Q697Pfs*51|1|0.06|ENSG00000089177|chr20:16379900-16379912|GTCTCTTCTTCTT/-|frameshift_variant	KIF16B|p.Q697Pfs*51|1|0.06|ENSG00000089177|chr20:16379900-16379912|GTCTCTTCTTCTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7619934082031	2	474.715827	947.417102	1.0171	0.00048285	2.5047	0.001189	3.5219	0.0016719	474.71677385391166	47.235	0.55445	47.082	46.817	47.371	-0.15301					22	14	2	0	0	0	0.027866	1	4745	4745		37.159	16.212	1	261190			56064	17797	39137	39202	61449	61449					-0.05871007422456387
NSNLPLPCMLL	11	Unmodified	_NSNLPLPCMLL_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2180480957031	3	405.547243	1213.6199	-0.90314	-0.00036627	-3.1309	-0.0012697	-4.034	-0.001636	405.8813416210497	46.139	0.18892	45.937	45.855	46.044	-0.20226					5	4	2	0	0	0	0.024727	1	4433	4433		29.551	19.406	1	33542	+		56065	27656	39138	39203	61450	61450					0.021635545878098128
NSNLTFQIY	9	Unmodified	_NSNLTFQIY_					0	0	0		nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-2|C2CD3;ENST00000366334.3_1_11:73819029-73820255:-|nuORF;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-4|C2CD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2586059570312	2	550.274564	1098.53457	0.12171	6.6971E-05	2.3165	0.0012747	2.4382	0.0013417	550.2754569390195	63.789	0.5265	63.53	63.39	63.916	-0.25824					17	13	2	0	0	0	0.024374	1	7241	7241		49.442	0	1	173450			56066	7770;18486	39139	39204	61451	61451					-0.010751512819979325
NSNNLSNSH	9	Unmodified	_NSNNLSNSH_					0	0	0			REV__nc|ENSG00000065989|P27815-6|PDE4A	REV__nc|ENSG00000065989|P27815-6|PDE4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.78485107421875	2	493.717944	985.421336	-0.34667	-0.00017116	-3.1137	-0.0015373	-3.4604	-0.0017084	493.71633466471314	46.751	0.3873	46.654	46.473	46.86	-0.096649					16	10	2	0	0	0	0.024344	1	4540	4540		37.812	7.3079	1	222770	+		56067	20325	39140	39205	61452	61452					-0.07195826675183525
NSNNLSNSH	9	Unmodified	_NSNNLSNSH_					0	0	0			REV__nc|ENSG00000065989|P27815-6|PDE4A	REV__nc|ENSG00000065989|P27815-6|PDE4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7848205566406	2	493.717944	985.421336	0.15514	7.6593E-05	-3.3909	-0.0016742	-3.2358	-0.0015976	493.71615377687345	47.077	0.45553	46.808	46.595	47.05	-0.26939					20	12	2	0	0	0	0.024344	1	4539	4539		45.972	21.769	1	259790	+		56068	20325	39140	39205	61453	61453					-0.07195826675183525
NSNNLSNSH	9	Unmodified	_NSNNLSNSH_					0	0	0			REV__nc|ENSG00000065989|P27815-6|PDE4A	REV__nc|ENSG00000065989|P27815-6|PDE4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7840576171875	2	493.717944	985.421336	-0.35191	-0.00017374	-3.3256	-0.0016419	-3.6776	-0.0018157	493.71629592544605	46.912	0.41111	46.718	46.512	46.923	-0.19387					18	11	2	0	0	0	0.024209	1	4521	4521		47.657	8.8512	1	269700	+		56069	20325	39140	39205	61454	61454					-0.07195826675183525
NSNNPNPIIS	10	Unmodified	_NSNNPNPIIS_					0	0	0		nc|ENSG00000167965|Q9BVC4-5|MLST8;ENST00000565717.5_1_16:2256398-2257242:+|nuORF;ENST00000564319.5_1_16:2256370-2257920:+|nuORF;ENST00000564294.5_1_16:2256050-2256778:+|nuORF;nc|ENSG00000167965|Q9BVC4-4|MLST8;nc|ENSG00000167965|Q9BVC4-3|MLST8;ENST00000563067.5_1_16:2256050-2258447:+|nuORF;ENST00000568542.5_1_16:2256445-2258875:+|nuORF;ENSG00000167965|ENST00000569417|MLST8	nc|ENSG00000167965|Q9BVC4-5|MLST8	nc|ENSG00000167965|Q9BVC4-5|MLST8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2472534179688	2	535.26727	1068.51999	-0.83581	-0.00044738	0.69719	0.00037318	-0.13862	-7.42E-05	535.2684364902955	73.41	0.34882	73.22	73.007	73.355	-0.19026					14	8	3	0	0	0	0.03519	1	8645	8645		56.434	24.904	1	96375			56070	18485	39141	39206	61455	61455					-0.01153223430151229
NSNNQQIID	9	Unmodified	_NSNNQQIID_					0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2896118164062	2	523.249077	1044.4836	-0.23879	-0.00012495	4.3681	0.0022856	4.1293	0.0021607	523.2514315119649	56.83	0.48152	56.926	56.684	57.166	0.095455					30	13	3	0	0	0	0.023837	1	6268	6268		45.972	0	1	1007800			56071	7585	39142	39207	61456	61456					-0.036861003268541026
NSNPRDCIA	9	Unmodified	_NSNPRDCIA_					0	0	0		TMPRSS11D|p.W238C|1|0.31|ENSG00000153802|chr4:67827499-67827499|C/G|missense_variant	TMPRSS11D|p.W238C|1|0.31|ENSG00000153802|chr4:67827499-67827499|C/G|missense_variant	TMPRSS11D|p.W238C|1|0.31|ENSG00000153802|chr4:67827499-67827499|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.22735595703125	2	495.227091	988.439628	-0.73416	-0.00036358	0.71445	0.00035381	-0.019717	-9.7643E-06	495.227314793142	38.308	0.83932	38.225	37.984	38.823	-0.082512					61	22	4	0	0	0	0.82115	1	3199	3199		37.812	0	1	4291400			56072	38093	39143	39208	61457	61457					-0.05505408024851022
NSNTQVVLL	9	Unmodified	_NSNTQVVLL_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.26617431640625	2	494.277106	986.53966	-1.0838	-0.00053571	0.6281	0.00031046	-0.45573	-0.00022526	494.2772622434488	48.977	0.76083	49.051	48.63	49.391	0.074192					41	20	3	0	0	0	0.024405	1	4909	4909		27.882	0	1	1057600			56073	6905	39144	39209	61458	61458					0.045851525806369864
NSNTYTFIS	9	Unmodified	_NSNTYTFIS_					0	0	0			REV__ENSG00000269433|ENST00000599405|OPN1MW3	REV__ENSG00000269433|ENST00000599405|OPN1MW3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2998046875	2	523.743096	1045.47164	-0.44011	-0.00023051	1.3468	0.00070535	0.90664	0.00047485	523.7436532664306	76.731	0.40308	76.731	76.516	76.919	0					19	9	3	0	0	0	0.024427	1	9462	9462		34.173	8.7224	1	351560	+		56074	21284	39145	39210	61459	61459					-0.049277170700406714
NSNYKRVP	8	Unmodified	_NSNYKRVP_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1;REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7332763671875	2	489.261791	976.509028	1.7892E-05	8.7537E-09	-0.9443	-0.00046201	-0.94428	-0.000462	489.26146401598646	22.589	0.55537	22.4	22.191	22.746	-0.18894					21	11	3	0	0	0	0.027866	1	859	859		24.203	0	1	236530	+		56075	22402;36602	39146	39211	61460	61460					0.019834189862422136
NSPDQKVKW	9	Unmodified	_NSPDQKVKW_					0	0	0			REV__ENSG00000102384|ENST00000682095|CENPI	REV__ENSG00000102384|ENST00000682095|CENPI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.786865234375	2	551.288005	1100.56146	0.038038	2.097E-05	0.57902	0.00031921	0.61706	0.00034018	551.2882827762351	101.06	0.34867	100.89	100.66	101.01	-0.17178					14	9	2	0	0	0	0.024495	1	12523	12523		26.693	3.1702	1	176040	+		56076	21306	39147	39212	61461	61461					0.015199573291738488
NSPHYLTKI	9	Unmodified	_NSPHYLTKI_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000443567.5_1_3:15282348-15292515:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2880859375	2	536.792924	1071.57129	-1.1017	-0.00059137	1.6566	0.00088926	0.55493	0.00029788	536.7934237875226	65.599	0.98228	65.348	64.743	65.726	-0.25111					41	23	3	0	0	0	0.024484	1	7536	7536		30.318	3.6248	1	826310			56077	4514	39148	39213	61462	61462					0.038371453345462214
NSPKKKSNN	9	Unmodified	_NSPKKKSNN_					0	0	0			REV__nc|ENSG00000107949|Q9P287-2|BCCIP	REV__nc|ENSG00000107949|Q9P287-2|BCCIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7948913574219	2	508.777805	1015.54106	0.30718	0.00015629	1.6771	0.00085328	1.9843	0.0010096	508.77866321669404	79.005	0.71615	78.75	78.471	79.187	-0.25471					31	16	3	0	0	0	0.024511	1	9424	9424		19.104	0.84144	1	469110	+		56078	36554	39149	39214	61463	61463					0.033907866693766664
NSPNIRVL	8	Unmodified	_NSPNIRVL_					0	0	0			REV__ENST00000493849.5_1_1:161182144-161183624:+|nuORF	REV__ENST00000493849.5_1_1:161182144-161183624:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7666320800781	2	456.766709	911.518865	-0.56917	-0.00025998	0.21691	9.9077E-05	-0.35227	-0.0001609	456.7666877348427	39.196	1.3682	39.097	38.475	39.844	-0.098755					96	37	4	0	0	0	0.71833	1	3340	3340		65.803	7.5733	1	3199100	+		56079	33775	39150	39215	61464	61464					0.05956606991605895
NSPSKPSLP	9	Unmodified	_NSPSKPSLP_					0	0	0		ENSG00000170734|ENST00000372236|POLH	ENSG00000170734|ENST00000372236|POLH	ENSG00000170734|ENST00000372236|POLH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7846374511719	2	463.750724	925.486896	-0.92659	-0.00042971	0.71273	0.00033053	-0.21387	-9.9182E-05	463.75086187145763	43.586	0.64455	43.367	43.104	43.749	-0.21939					28	17	2	0	0	0	0.024181	1	3977	3977		38.754	0	1	301260			56080	8071	39151	39216	61465	61465					0.021171945178025453
NSPWNSKPP	9	Unmodified	_NSPWNSKPP_					0	0	0		ENST00000441778.6_1_4:16504268-16507504:-|nuORF;ENST00000502640.5_1_4:16504268-16504550:-|nuORF;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2;nc|ENSG00000198728|Q86U70-2|LDB1;ENSG00000198728|ENST00000673968|LDB1	ENST00000441778.6_1_4:16504268-16507504:-|nuORF	ENST00000441778.6_1_4:16504268-16507504:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7843017578125	2	513.753798	1025.49304	-0.28908	-0.00014852	-1.9337	-0.00099343	-2.2227	-0.0011419	513.752834759396	73.062	0.54382	72.798	72.595	73.139	-0.26479					15	12	2	0	0	0	0.024477	1	8622	8622		27.882	1.1893	1	99135			56081	7970	39152	39217	61466	61466					-0.01868287250681533
NSQGLPLHA	9	Unmodified	_NSQGLPLHA_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7773742675781	2	468.748516	935.482479	-0.053432	-2.5046E-05	-0.44521	-0.00020869	-0.49864	-0.00023374	468.7471421590742	25.209	0.43418	25.039	24.647	25.081	-0.17078					12	9	2	0	0	0	0.024405	1	1170	1170		35.618	1.4457	1	32258	+		56082	24366	39153	39218	61467	61467					0.012157300948956618
NSQGLPLHA	9	Unmodified	_NSQGLPLHA_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.748516	935.482479	-0.39058	-0.00018308	0.64326	0.00030153	0.25268	0.00011845	468.74853667152024	25.354	0.39276	25.127	24.797	25.19	-0.22683	0.11086	0.00082823	NaN	35.618	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40213	+		56083	24366	39153	39218							0.012157300948956618
NSQGLPLHA	9	Unmodified	_NSQGLPLHA_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.748516	935.482479	0.83476	0.00039129	-2.8362	-0.0013295	-2.0014	-0.00093817	468.7462948141601	25.054	0.55733	24.883	24.643	25.2	-0.17151	-0.13329	-0.0024338	NaN	35.618	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38976	+		56084	24366	39153	39218							0.012157300948956618
NSQIDEMY	8	Unmodified	_NSQIDEMY_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.2081298828125	2	500.208032	998.401511	-0.80537	-0.00040285	0.29402	0.00014707	-0.51135	-0.00025578	500.2080610174261	43.782	3.9178	43.537	42.222	46.139	-0.24432					297	105	4	0	0	0	1.0198	1	3991	3991		34.173	1.3601	1	8211000	+		56085	26893	39154	39219	61468	61468					-0.09775338730162275
NSQLAKESH	9	Unmodified	_NSQLAKESH_					0	0	0			REV__nc|ENSG00000188157|O00468-4|AGRN	REV__nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2591552734375	2	507.254163	1012.49377	-0.33241	-0.00016862	-1.065	-0.00054021	-1.3974	-0.00070883	507.7550380134413	25.5	1.1697	25.329	24.602	25.771	-0.17078					48	27	3	0	0	0	0.024511	1	1169	1169		32.812	3.6629	1	184590	+		56086	37039	39155	39220	61469	61469					-0.011974926016137033
NSQLIVRK	8	Unmodified	_NSQLIVRK_					0	0	0			REV__nc|nan|Q96M02-2|C10orf90	REV__nc|nan|Q96M02-2|C10orf90	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.297119140625	2	479.295633	956.576714	0.29383	0.00014083	-0.43977	-0.00021078	-0.14594	-6.9947E-05	479.29524952766366	102.02	0.52851	102.02	101.77	102.3	0					23	11	3	0	0	0	1.0574	1	13069	13069		23.042	0	1	327640	+		56087	24964	39156	39221	61470	61470					0.09668868917037798
NSQLLLLSF	9	Unmodified	_NSQLLLLSF_					0	0	0			REV__ENST00000540643.5_2_22:31892283-31892502:+|nuORF	REV__ENST00000540643.5_2_22:31892283-31892502:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2771606445312	2	517.797675	1033.5808	-0.88033	-0.00045583	0.73509	0.00038063	-0.14524	-7.5206E-05	517.7977718115977	61.81	0.4777	61.81	61.566	62.044	0					22	12	2	0	0	0	0.024487	1	7197	7197		24.203	6.8378	1	424950	+		56088	34751	39157	39222	61471	61471					0.06534913620089355
NSQNHSFNDI	10	Unmodified	_NSQNHSFNDI_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.2384033203125	2	588.257434	1174.50031	-0.93256	-0.00054859	4.0924	0.0024074	3.1598	0.0018588	588.7608804026958	53.772	0.41089	53.575	53.387	53.798	-0.19739					32	12	4	0	0	0	0.03519	1	5683	5683		109.48	35.223	1	458270	+		56089	36458	39158	39223	61472	61472					-0.07995599440891965
NSQRPGSTKN	10	Unmodified	_NSQRPGSTKN_					0	0	0		ENST00000348993.9_1_15:85182957-85183131:+|nuORF	ENST00000348993.9_1_15:85182957-85183131:+|nuORF	ENST00000348993.9_1_15:85182957-85183131:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7899169921875	2	544.775793	1087.53703	-0.34063	-0.00018557	-2.9547	-0.0016096	-3.2953	-0.0017952	544.7739254465638	58.883	0.39447	58.968	58.776	59.171	0.085686					19	10	2	0	0	0	0.03519	1	6628	6628		45.022	0	1	149090			56090	12585	39159	39224	61473	61473					-0.003233028243357694
NSRAKRLE	8	Unmodified	_NSRAKRLE_					0	0	0			REV__ENSG00000177272|ENST00000369769|KCNA3	REV__ENSG00000177272|ENST00000369769|KCNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7896423339844	2	487.280515	972.546476	-0.56126	-0.00027349	-2.6544	-0.0012934	-3.2157	-0.0015669	487.2792413135366	54.747	0.45847	54.845	54.591	55.05	0.098015					18	12	2	0	0	0	0.027866	1	5947	5947		102.77	41.801	1	332240	+		56091	27097	39160	39225	61474	61474					0.059105102518515196
NSRAKRLE	8	Unmodified	_NSRAKRLE_					0	0	0			REV__ENSG00000177272|ENST00000369769|KCNA3	REV__ENSG00000177272|ENST00000369769|KCNA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.280515	972.546476	-0.032272	-1.5726E-05	-3.3043	-0.0016101	-3.3366	-0.0016258	487.27862246276584	54.949	0.42608	54.949	54.723	55.149	0	0.019368	-0.00064733	NaN	102.77	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299730	+		56092	27097	39160	39225							0.059105102518515196
NSRAKRLE	8	Unmodified	_NSRAKRLE_					0	0	0			REV__ENSG00000177272|ENST00000369769|KCNA3	REV__ENSG00000177272|ENST00000369769|KCNA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.280515	972.546476	-0.23174	-0.00011292	-3.6335	-0.0017705	-3.8652	-0.0018835	487.2785901930367	55.015	0.55817	54.864	54.608	55.166	-0.15036	-0.065261	-0.00096814	NaN	102.77	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347100	+		56093	27097	39160	39225							0.059105102518515196
NSRAKRLE	8	Unmodified	_NSRAKRLE_					0	0	0			REV__ENSG00000177272|ENST00000369769|KCNA3	REV__ENSG00000177272|ENST00000369769|KCNA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.280515	972.546476	-0.83976	-0.0004092	2.9361	0.0014307	2.0963	0.0010215	487.28119929673704	55.206	0.20252	55.06	54.986	55.188	-0.14609	0.13083	0.0054343	NaN	102.77	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123460	+		56094	27097	39160	39225							0.059105102518515196
NSRGARLPK	9	Unmodified	_NSRGARLPK_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7891845703125	2	499.796332	997.578111	-0.22711	-0.00011351	2.7346	0.0013667	2.5075	0.0012532	499.7973325905114	92.541	0.49251	92.399	92.211	92.703	-0.14131					27	11	4	0	0	0	0.024447	1	11397	11397		40.778	18.818	1	149790			56095	10343	39161	39226	61475	61475					0.07922503005806902
NSRGWPYC	8	Unmodified	_NSRGWPYC_					0	0	0		ENST00000589225.5_1_17:76793370-76793733:-|nuORF	ENST00000589225.5_1_17:76793370-76793733:-|nuORF	ENST00000589225.5_1_17:76793370-76793733:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.8055114746094	2	491.713619	981.412685	-0.17294	-8.5035E-05	1.3456	0.00066165	1.1727	0.00057661	491.7141719381528	59.949	0.82072	59.748	59.427	60.248	-0.20016					50	21	3	0	0	0	0.027866	1	6857	6857		28.254	2.8041	1	1295400			56096	17305	39162	39227	61476	61476					-0.07876471845361266
NSRHKVSK	8	Unmodified	_NSRHKVSK_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7843322753906	2	478.275232	954.535912	-0.031084	-1.4867E-05	4.2545	0.0020348	4.2234	0.00202	478.2765368549481	67.187	0.60252	66.905	66.671	67.273	-0.28279					28	14	3	0	0	0	0.027866	1	8029	8029		15.642	0	1	314040	+		56097	20191;37668	39163	39228	61477	61477					0.05682527597423359
NSRHKVSK	8	Unmodified	_NSRHKVSK_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.275232	954.535912	0.26197	0.0001253	1.8489	0.00088428	2.1109	0.0010096	478.2761656818953	66.89	0.41588	66.89	66.672	67.088	0	-0.021437	-0.00055292	NaN	29.17	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250890	+		56098	20191;37668	39163	39228							0.05682527597423359
NSRHKVSK	8	Unmodified	_NSRHKVSK_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2;REV__SYNE2-ITPK1|1|fusion	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.275232	954.535912	-0.097147	-4.6463E-05	2.4839	0.001188	2.3868	0.0011415	478.27642399309264	66.917	0.50283	66.941	66.728	67.23	0.023911	0.028846	5.4537E-05	NaN	29.17	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260100	+		56099	20191;37668	39163	39228							0.05682527597423359
NSRIVPTV	8	Unmodified	_NSRIVPTV_					0	0	0			REV__nc|ENSG00000166845|Q8IYD9|LAS2	REV__nc|ENSG00000166845|Q8IYD9|LAS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.27166748046875	2	443.261259	884.507966	0.58943	0.00026127	-0.43405	-0.0001924	0.15537	6.8871E-05	443.26091428893875	47.259	1.3239	47.106	46.41	47.734	-0.15301					61	36	2	0	0	0	0.027866	1	4595	4595		21.96	0	1	1241500	+		56100	26064	39164	39229	61478	61478					0.061092046173257586
NSRKQEAEW	9	Unmodified	_NSRKQEAEW_					0	0	0		nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496|CLTA;nc|ENSG00000122705|P09496-5|CLTA;ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-3|CLTA	nc|ENSG00000122705|P09496-4|CLTA	nc|ENSG00000122705|P09496-4|CLTA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.27880859375	2	574.278169	1146.54179	0.069172	3.9724E-05	-0.53823	-0.00030909	-0.46905	-0.00026937	574.2778791983982	24.192	0.98813	23.977	23.689	24.677	-0.2151					55	22	4	0	0	0	0.16638	3	1048	1025;1036;1048		95.815	16.247	1	3008400			56101	18230	39165	39230	61479;61480;61481	61481					-0.025624186815548455
NSRKQEAEW	9	Unmodified	_NSRKQEAEW_					0	0	0		nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496|CLTA;nc|ENSG00000122705|P09496-5|CLTA;ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-3|CLTA	nc|ENSG00000122705|P09496-4|CLTA	nc|ENSG00000122705|P09496-4|CLTA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.278564453125	2	574.278169	1146.54179	-0.29923	-0.00017184	-0.034449	-1.9783E-05	-0.33367	-0.00019162	574.2781226465937	24.116	0.89883	23.941	23.612	24.511	-0.17484					54	20	4	0	0	0	0.1158	3	1023	1003;1012;1023		107.01	26.553	1	2870500			56102	18230	39165	39230	61482;61483;61484	61484					-0.025624186815548455
NSRKQEAEW	9	Unmodified	_NSRKQEAEW_					0	0	0		nc|ENSG00000122705|P09496-4|CLTA;nc|ENSG00000122705|P09496|CLTA;nc|ENSG00000122705|P09496-5|CLTA;ENSG00000122705|ENST00000345519|CLTA;nc|ENSG00000122705|P09496-3|CLTA	nc|ENSG00000122705|P09496-4|CLTA	nc|ENSG00000122705|P09496-4|CLTA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.2791137695312	2	574.278169	1146.54179	1.8066	0.0010375	-2.2535	-0.0012941	-0.44684	-0.00025661	574.2768884203542	24.053	0.96427	23.872	23.582	24.547	-0.18089					64	21	4	0	0	0	0.094442	3	982	973;982;994		112.41	42.783	1	2883700			56103	18230	39165	39230	61485;61486;61487	61486					-0.025624186815548455
NSRKVQNQ	8	Unmodified	_NSRKVQNQ_					0	0	0		ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant;ENSG00000179930|ENST00000339948|ZNF648	ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7896423339844	2	487.262322	972.510091	-0.95321	-0.00046446	0.23805	0.00011599	-0.71515	-0.00034847	487.2608893887329	54.945	0.33783	55.043	54.845	55.183	0.098011					13	9	2	0	0	0	0.027866	1	5947	5947		71.296	7.0884	1	124070			56104	8941	39166	39231	61488	61488					0.022736333551392818
NSRQFREDSL	10	Unmodified	_NSRQFREDSL_					0	0	0			REV__ENST00000314742.12_2_15:101120688-101120928:-|nuORF	REV__ENST00000314742.12_2_15:101120688-101120928:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8919677734375	3	417.874064	1250.60036	-0.8939	-0.00037354	2.1094	0.00088147	1.2155	0.00050793	417.8749360779523	37.248	1.253	37.028	36.647	37.9	-0.2195					71	32	3	0	0	0	0.03519	1	3103	3103		20.315	3.1483	1	4686300	+		56105	30249	39167	39232	61489	61489					-0.014913621070945737
NSRREGLI	8	Unmodified	_NSRREGLI_					0	0	0		ENST00000424720.2_12:132824120-132905933:-|nuORF;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000424720.2_12:132824120-132905933:-|nuORF	ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.30010986328125	2	472.76724	943.519927	0.2804	0.00013256	0.07006	3.3122E-05	0.35046	0.00016569	472.767118268852	20.488	0.54173	20.321	20.049	20.591	-0.16774					15	10	2	0	0	0	0.027866	1	535	535		34.173	7.4796	1	143810			56106	9172	39168	39233	61490	61490					0.04590821360534392
NSRREGLI	8	Unmodified	_NSRREGLI_					0	0	0		ENST00000424720.2_12:132824120-132905933:-|nuORF;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000424720.2_12:132824120-132905933:-|nuORF	ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.76724	943.519927	-0.00084967	-4.017E-07	-0.63002	-0.00029785	-0.63087	-0.00029825	472.7668547420984	20.601	1.106	20.496	19.791	20.897	-0.10477	0.07972	-0.00022196	NaN	47.657	66	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504210			56107	9172	39168	39233							0.04590821360534392
NSRREGLI	8	Unmodified	_NSRREGLI_					0	0	0		ENST00000424720.2_12:132824120-132905933:-|nuORF;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000424720.2_12:132824120-132905933:-|nuORF	ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.76724	943.519927	1.5509	0.00073322	-3.0511	-0.0014424	-1.5002	-0.00070923	472.76564679521505	20.434	0.3937	20.503	20.316	20.71	0.068903	0.086728	-0.0025111	NaN	47.657	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27945			56108	9172	39168	39233							0.04590821360534392
NSRREGLI	8	Unmodified	_NSRREGLI_					0	0	0		ENST00000424720.2_12:132824120-132905933:-|nuORF;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000424720.2_12:132824120-132905933:-|nuORF	ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.76724	943.519927	0.85986	0.00040651	-0.44892	-0.00021223	0.41094	0.00019428	472.7669499058486	20.606	0.44446	20.41	20.187	20.632	-0.19577	-0.0062652	-5.0724E-05	NaN	47.657	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97414			56109	9172	39168	39233							0.04590821360534392
NSRSLRSKT	9	Unmodified	_NSRSLRSKT_					0	0	0		ENST00000580238.5_2_11:46639197-46639293:+|nuORF	ENST00000580238.5_2_11:46639197-46639293:+|nuORF	ENST00000580238.5_2_11:46639197-46639293:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7439575195312	2	524.796529	1047.5785	-0.23341	-0.00012249	3.6316	0.0019059	3.3982	0.0017834	524.7977146632817	39.973	0.57276	39.748	39.541	40.114	-0.225					24	14	3	0	0	0	0.024541	1	3432	3432		6.7355	0	1	246050			56110	17147	39169	39234	61491	61491					0.056618779349946635
NSRWTLKRQY	10	Unmodified	_NSRWTLKRQY_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2451477050781	3	451.245832	1350.71567	0.24205	0.00010922	-1.7705	-0.00079895	-1.5285	-0.00068972	451.2450383307364	45.718	0.8969	45.621	45.326	46.223	-0.096649					99	24	5	0	0	0	1.0275	1	4385	4385		42.338	6.0204	1	13432000	+		56111	26178	39170	39235	61492	61492					0.0543378681456943
NSSIALSLVP	10	Unmodified	_NSSIALSLVP_					0	0	0			REV__nc|ENSG00000196792|Q13033-2|STRN3	REV__nc|ENSG00000196792|Q13033-2|STRN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3133239746094	2	500.787307	999.560061	-0.47346	-0.00023711	0.17044	8.5354E-05	-0.30303	-0.00015175	500.7872187602785	77.033	0.1626	76.811	76.696	76.859	-0.22288					5	3	2	0	0	0	0.03519	1	9465	9465		23.523	0	1	187020	+		56112	28224	39171	39236	61493	61493					0.06026323240428155
NSSILDND	8	Unmodified	_NSSILDND_					0	0	0		nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15;ENST00000493134.1_1_3:44840780-44854740:+|nuORF;nc|ENSG00000163808|Q9NS87-4|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.7373046875	2	439.198522	876.38249	0.32029	0.00014067	0.58907	0.00025872	0.90935	0.00039939	439.1988098605772	61.493	0.6157	61.493	61.18	61.796	0					39	15	4	0	0	0	0.027866	1	7145	7145		9.1829	0	1	627680			56113	7147	39172	39237	61494	61494					-0.06064552029567949
NSSILDND	8	Unmodified	_NSSILDND_					0	0	0		nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15;ENST00000493134.1_1_3:44840780-44854740:+|nuORF;nc|ENSG00000163808|Q9NS87-4|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	439.198522	876.38249	-0.31219	-0.00013711	1.4803	0.00065015	1.1681	0.00051304	439.19916264244574	61.723	0.83958	61.509	61.252	62.091	-0.21375	-0.00013398	0.00037216	NaN	14.137	38	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1091000			56114	7147	39172	39237							-0.06064552029567949
NSSKLRVNKLI	11	Unmodified	_NSSKLRVNKLI_					0	0	0		nc|ENSG00000186575|P35240-10|NF2;nc|ENSG00000186575|P35240-4|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-5|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-10|NF2	nc|ENSG00000186575|P35240-10|NF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.7349548339844	3	424.597983	1270.77212	-0.41791	-0.00017744	3.6916	0.0015674	3.2736	0.00139	424.59947449596615	36.614	1.0087	36.572	36.28	37.289	-0.042454					57	26	3	0	0	0	0.024792	1	3009	3009		18.531	8.8849	1	428100			56115	9562	39173	39238	61495	61495					0.14756414651242267
NSSKPPQSL	9	Unmodified	_NSSKPPQSL_					0	0	0			REV__RGS22|p.P576S|1|0.16|ENSG00000132554|chr8:100047560-100047560|G/A|missense_variant	REV__RGS22|p.P576S|1|0.16|ENSG00000132554|chr8:100047560-100047560|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7825012207031	2	479.253631	956.49271	-0.066306	-3.1777E-05	4.3827	0.0021004	4.3164	0.0020686	479.2555992529373	57.94	0.41904	57.75	57.37	57.789	-0.19018					16	10	2	0	0	0	0.024389	1	6299	6299		42.864	0	1	463120	+		56116	37438	39174	39239	61496	61496					0.012722930294785328
NSSPEINDI	9	Unmodified	_NSSPEINDI_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7503967285156	2	494.732729	987.450904	-0.17394	-8.6055E-05	-4.2604	-0.0021078	-4.4344	-0.0021938	494.72976930781715	45.383	0.33452	45.427	45.279	45.614	0.043877					13	9	2	0	0	0	0.024447	1	4367	4367		32.812	0	1	206320	+		56117	26589	39175	39240	61497	61497					-0.043323074497266134
NSSQLTKP	8	Unmodified	_NSSQLTKP_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2430419921875	2	437.735074	873.455596	-0.10427	-4.5641E-05	0.22262	9.745E-05	0.11836	5.1809E-05	437.73517261107384	34.361	0.53919	34.361	34.09	34.629	0					19	13	2	0	0	0	0.027866	1	2533	2533		16.473	0	1	222250	+		56118	28806	39176	39241	61498	61498					0.013806214837131847
NSSSHLED	8	Unmodified	_NSSSHLED_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468496.5_1_17:40362419-40369297:-|nuORF;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.2705078125	2	444.688321	887.362089	-0.98555	-0.00043826	2.5465	0.0011324	1.5609	0.00069413	444.6891902931151	39.022	0.4385	39.045	38.768	39.206	0.023727					18	11	2	0	0	0	0.027866	1	3216	3216		25.574	4.7369	1	182520			56119	8408	39177	39242	61499	61499					-0.08609722689368482
NSSTMPACIN	10	Unmodified	_NSSTMPACIN_					0	0	0			REV__DSG4|p.A702S|1|0.34|ENSG00000175065|chr18:31409775-31409775|G/T|missense_variant	REV__DSG4|p.A702S|1|0.34|ENSG00000175065|chr18:31409775-31409775|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7749633789062	2	519.223159	1036.43177	-0.092764	-4.8165E-05	-0.067581	-3.509E-05	-0.16035	-8.3255E-05	519.2229803640685	42.8	0.61943	42.826	42.605	43.224	0.026012					24	16	2	0	0	0	0.03519	1	3949	3949		42.864	8.9426	1	105710	+		56120	19714	39178	39243	61500	61500					-0.08499303336634512
NSSVHNSNI	9	Unmodified	_NSSVHNSNI_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2616882324219	2	486.230687	970.446822	-0.68423	-0.00033269	-3.6769	-0.0017878	-4.3611	-0.0021205	486.2287631490008	38.779	1.3883	38.779	38.071	39.459	0					53	38	2	0	0	0	0.024374	1	3209	3209		49.442	27.482	1	223220	+		56121	28503	39179	39244	61501	61501					-0.03958352152767475
NSSVPPGEP	9	Unmodified	_NSSVPPGEP_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ALDH1L2|p.G638Afs*16|1|0.08|ENSG00000136010|chr12:105040645-105040645|C/-|frameshift_variant;ENSG00000136010|ENST00000258494|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7878723144531	2	442.211432	882.408311	0.33135	0.00014652	-4.1295	-0.0018261	-3.7982	-0.0016796	442.20853482331734	42.719	0.33082	42.745	42.566	42.897	0.026012					18	8	3	0	0	0	0.024323	1	3898	3898		35.618	11.099	1	92159			56122	61	39180	39245	61502	61502					-0.037596577872704984
NSTAKVIVV	9	Unmodified	_NSTAKVIVV_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7535400390625	2	465.784567	929.554582	-0.62626	-0.0002917	2.1179	0.00098648	1.4916	0.00069478	465.7850271520019	23.462	0.28638	23.462	23.321	23.607	0					9	6	2	0	0	0	0.024427	1	919	919		26.693	0	1	37764			56123	1044	39181	39246	61503	61503					0.08698644448622872
NSTAKVIVV	9	Unmodified	_NSTAKVIVV_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.784567	929.554582	0.32354	0.0001507	-0.48956	-0.00022803	-0.16601	-7.7327E-05	465.7841520598135	23.53	0.50639	23.328	23.061	23.567	-0.20193	-0.010748	-0.00027876	NaN	47.657	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90609			56124	1044	39181	39246							0.08698644448622872
NSTAKVIVV	9	Unmodified	_NSTAKVIVV_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.784567	929.554582	-0.23443	-0.00010919	0.36684	0.00017087	0.13241	6.1675E-05	465.7845388329481	23.452	0.93705	23.272	23.021	23.958	-0.17989	-0.066159	0.00051903	NaN	47.657	29	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112930			56125	1044	39181	39246							0.08698644448622872
NSTAKVIVV	9	Unmodified	_NSTAKVIVV_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.784567	929.554582	1.6295	0.00075901	-1.5514	-0.0007226	0.078177	3.6414E-05	465.7836614588875	23.483	0.44926	23.291	23.079	23.529	-0.19117	-0.04694	-0.0012679	NaN	47.657	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90291			56126	1044	39181	39246							0.08698644448622872
NSTFFKSF	8	Unmodified	_NSTFFKSF_					0	0	0		SYCP1|p.D31N|1|0.25|ENSG00000198765|chr1:114855555-114855555|G/A|missense_variant	SYCP1|p.D31N|1|0.25|ENSG00000198765|chr1:114855555-114855555|G/A|missense_variant	SYCP1|p.D31N|1|0.25|ENSG00000198765|chr1:114855555-114855555|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7508850097656	2	489.239993	976.465432	-0.75229	-0.00036805	-2.7303	-0.0013358	-3.4826	-0.0017038	489.2385451947711	34.869	0.65209	34.847	34.397	35.049	-0.021763					22	16	2	0	0	0	0.027866	1	2615	2615		30.504	0	1	164360			56127	38046	39182	39247	61504	61504					-0.023741905108863648
NSTFLECLP	9	Unmodified	_NSTFLECLP_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.287353515625	2	512.244418	1022.47428	-0.043922	-2.2499E-05	3.2467	0.0016631	3.2028	0.0016406	512.2460138706608	57.94	0.84778	57.94	57.758	58.606	0					38	22	2	0	0	0	0.024427	1	6644	6644		34.173	0	1	386620			56128	874	39183	39248	61505	61505					-0.036055849367244264
NSTLVVTLP	9	Unmodified	_NSTLVVTLP_					0	0	0		ENSG00000159650|ENST00000290868|UROC1;nc|ENSG00000159650|Q96N76-2|UROC1	ENSG00000159650|ENST00000290868|UROC1	ENSG00000159650|ENST00000290868|UROC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2669372558594	2	472.276575	942.538597	-0.051507	-2.4326E-05	-1.087	-0.00051337	-1.1385	-0.0005377	472.27593062029763	75.56	0.7146	75.287	75.06	75.775	-0.27266					30	17	2	0	0	0	0.024427	1	9003	9003		26.693	0	1	967280			56129	6758	39184	39249	61506	61506					0.06502938211713172
NSTQLPVE	8	Unmodified	_NSTQLPVE_					0	0	0			REV__nc|ENSG00000106052|Q86VP1-2|TAX1BP1	REV__nc|ENSG00000106052|Q86VP1-2|TAX1BP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.2613525390625	2	444.227082	886.439611	-0.88122	-0.00039146	2.4109	0.001071	1.5297	0.00067953	444.2279824566173	37.758	0.56432	37.54	37.263	37.828	-0.21848					33	14	4	0	0	0	0.027866	1	3054	3054		21.96	0	1	547250	+		56130	21591	39185	39250	61507	61507					-0.008150847531851468
NSTRRQTE	8	Unmodified	_NSTRRQTE_					0	0	0			REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.270263671875	2	496.249412	990.48427	-0.2725	-0.00013523	-2.6561	-0.0013181	-2.9286	-0.0014533	496.24760195757955	77.84	0.42295	77.678	77.441	77.864	-0.16196					15	9	3	0	0	0	0.027866	1	9254	9254		40.778	16.575	1	92393	+		56131	27300	39186	39251	61508	61508					-0.011352608871334269
NSVEWHIL	8	Unmodified	_NSVEWHIL_					0	0	0			REV__ENST00000398117.1_1_18:60986512-60986635:-|nuORF	REV__ENST00000398117.1_1_18:60986512-60986635:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2694396972656	2	499.258717	996.50288	-0.29235	-0.00014596	0.90362	0.00045114	0.61128	0.00030518	499.2591650073056	60.881	0.59219	60.675	60.336	60.928	-0.20599					23	14	2	0	0	0	0.027866	1	6813	6813		1.3276	0	1	336050	+		56132	31798	39187	39252	61509	61509					0.004489007547249457
NSVEWHIL	8	Unmodified	_NSVEWHIL_					0	0	0			REV__ENST00000398117.1_1_18:60986512-60986635:-|nuORF	REV__ENST00000398117.1_1_18:60986512-60986635:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.258717	996.50288	-0.97606	-0.00048731	1.9538	0.00097544	0.97772	0.00048813	499.2597529448345	60.792	0.51076	60.616	60.403	60.914	-0.1761	-0.057256	8.5511E-05	NaN	1.3276	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330210	+		56133	31798	39187	39252							0.004489007547249457
NSVEWHIL	8	Unmodified	_NSVEWHIL_					0	0	0			REV__ENST00000398117.1_1_18:60986512-60986635:-|nuORF	REV__ENST00000398117.1_1_18:60986512-60986635:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.258717	996.50288	-1.0985	-0.00054842	2.6624	0.0013292	1.5639	0.00078081	499.260322935934	60.983	0.84251	60.729	60.336	61.179	-0.25373	0.055482	0.00079308	NaN	1.3276	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335930	+		56134	31798	39187	39252							0.004489007547249457
NSVIFCALD	9	Unmodified	_NSVIFCALD_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2767028808594	2	491.239135	980.463718	-0.5859	-0.00028782	-0.32356	-0.00015895	-0.90946	-0.00044676	491.238482766085	65.07	0.51109	65.107	64.743	65.254	0.037376					21	13	3	0	0	0	0.024511	1	7562	7562		25.574	0	1	198530			56135	4995	39188	39253	61510	61510					-0.027295675911886974
NSVLLPLL	8	Unmodified	_NSVLLPLL_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.28704833984375	2	434.778754	867.542954	-0.22969	-9.9866E-05	3.4945	0.0015193	3.2648	0.0014195	434.78060663142526	51.992	0.5806	51.845	51.477	52.057	-0.14735					25	16	2	0	0	0	0.027866	1	5558	5558		33.516	6.7195	1	218950			56136	4475	39189	39254	61511	61511					0.10388447425293634
NSVLVIIDVKP	11	Unmodified	_NSVLVIIDVKP_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	599.3709716796875	2	598.866089	1195.71762	0.3915	0.00023446	-4.2759	-0.0025607	-3.8844	-0.0023263	598.8641416075244	97.809	0.40456	97.672	97.377	97.781	-0.1367					11	8	2	0	0	0	0.024727	1	12083	12083		43.651	15.769	1	68357			56137	2456	39190	39255	61512	61512					0.12759402779806805
NSVLVIIDVKP	11	Unmodified	_NSVLVIIDVKP_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	598.866089	1195.71762	-1.4639	-0.00087669	-2.2015	-0.0013184	-3.6654	-0.0021951	598.8649435319192	97.616	0.61449	97.616	97.325	97.94	0	-0.018677	0.00086194	NaN	43.651	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114340			56138	2456	39190	39255							0.12759402779806805
NSVLVIIDVKP	11	Unmodified	_NSVLVIIDVKP_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	598.866089	1195.71762	-0.163	-9.7614E-05	-3.6126	-0.0021635	-3.7756	-0.0022611	598.8642819447592	97.53	0.44419	97.539	97.326	97.77	0.0089111	-0.096094	-0.00082826	NaN	43.651	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112470			56139	2456	39190	39255							0.12759402779806805
NSVLVIIDVKP	11	Unmodified	_NSVLVIIDVKP_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	598.866089	1195.71762	0.016714	1.0009E-05	-3.5725	-0.0021394	-3.5558	-0.0021294	598.8642873185493	97.715	0.56129	97.713	97.412	97.973	-0.0020752	0.077687	-0.00078015	NaN	43.651	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68795			56140	2456	39190	39255							0.12759402779806805
NSVPVRQV	8	Unmodified	_NSVPVRQV_					0	0	0			REV__ENSG00000160856|ENST00000368184|FCRL3	REV__ENSG00000160856|ENST00000368184|FCRL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.7635803222656	2	449.758884	897.503215	-0.14264	-6.4153E-05	0.93519	0.00042061	0.79255	0.00035646	449.7589407022187	30.592	0.50767	30.443	30.301	30.809	-0.14952					27	11	4	0	0	0	0.027866	1	1929	1929		23.042	15.849	1	562980	+		56141	25352	39191	39256	61513	61513					0.05036320474573586
NSVRPGFPK	9	Unmodified	_NSVRPGFPK_					0	0	0		DRD3|p.Q240K|1|0.26|ENSG00000151577|chr3:114139505-114139505|G/T|missense_variant	DRD3|p.Q240K|1|0.26|ENSG00000151577|chr3:114139505-114139505|G/T|missense_variant	DRD3|p.Q240K|1|0.26|ENSG00000151577|chr3:114139505-114139505|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7662353515625	2	501.279983	1000.54541	0.10592	5.3094E-05	-2.1138	-0.0010596	-2.0079	-0.0010065	501.28053418090536	74.664	0.26067	74.401	74.186	74.446	-0.26325					6	5	2	0	0	0	0.024418	1	8790	8790		23.523	5.1983	1	37937			56142	671	39192	39257	61514	61514					0.04516295882956456
NSVRSHVM	8	Unmodified	_NSVRSHVM_					0	0	0			REV__ENST00000341165.10_2_17:41362655-41362730:+|nuORF	REV__ENST00000341165.10_2_17:41362655-41362730:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.81292724609375	2	465.234719	928.454884	-0.78832	-0.00036676	-3.3732	-0.0015693	-4.1615	-0.0019361	465.2332437812291	38.183	0.19087	37.964	37.828	38.019	-0.21848					7	5	2	0	0	0	0.027866	1	3106	3106		17.365	0	1	68027	+		56143	30629	39193	39258	61515	61515					-0.01220496436974372
NSVRTRDE	8	Unmodified	_NSVRTRDE_					0	0	0			REV__ENST00000525379.1_1_11:66985159-66986889:+|nuORF	REV__ENST00000525379.1_1_11:66985159-66986889:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2586975097656	2	488.743962	975.473371	-0.46721	-0.00022835	-2.0525	-0.0010032	-2.5197	-0.0012315	488.74373243816063	30.774	0.57998	30.785	30.376	30.956	0.011797					16	13	2	0	0	0	0.027866	1	1997	1997		35.618	20.954	1	35391	+		56144	34414	39194	39259	61516	61516					-0.01534663261429614
NSVSPWPEGS	10	Unmodified	_NSVSPWPEGS_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.241943359375	2	530.240721	1058.46689	0.56783	0.00030109	-0.012857	-6.8174E-06	0.55498	0.00029427	530.2406059221765	110.55	1.0768	110.4	109.91	110.98	-0.1469					89	41	3	0	0	0	1.118	1	13532	13532		30.318	1.1477	1	70861	+		56145	25275	39195	39260	61517	61517					-0.06000601212804213
NSVSSEEEEE	10	Unmodified	_NSVSSEEEEE_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7484741210938	2	569.722755	1137.43096	0.052491	2.9906E-05	2.3535	0.0013409	2.406	0.0013708	569.7244812020328	69.839	0.20655	69.617	69.474	69.68	-0.22245					7	4	2	0	0	0	0.03519	1	8116	8116		23.523	2.6855	1	79680			56146	8985	39196	39261	61518	61518					-0.13226147970976854
NSVTQLQL	8	Unmodified	_NSVTQLQL_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.75091552734375	2	451.750724	901.486896	0.32446	0.00014658	-0.2398	-0.00010833	0.084657	3.8244E-05	451.7505374753047	25.733	0.83108	25.813	25.54	26.371	0.08009					43	19	3	0	0	0	0.93437	1	1202	1202		47.657	3.1263	1	608270			56147	9585	39197	39262	61519	61519					0.03221194517800541
NSVYTNVL	8	Unmodified	_NSVYTNVL_					0	0	0		ENST00000476372.1_1_11:291984-293434:+|nuORF;ENST00000474221.5_1_11:291984-293434:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENST00000476372.1_1_11:291984-293434:+|nuORF	ENST00000476372.1_1_11:291984-293434:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.2374267578125	2	455.23745	908.460347	-0.078384	-3.5683E-05	0.056391	2.5671E-05	-0.021993	-1.0012E-05	455.2373593135765	43.361	0.99012	43.249	42.927	43.917	-0.11253					68	26	4	0	0	0	0.42912	1	3997	3997		93.195	5.4412	1	5884100			56148	5536	39198	39263	61520	61520					0.002455056264693667
NSVYTNVL	8	Unmodified	_NSVYTNVL_					0	0	0		ENST00000476372.1_1_11:291984-293434:+|nuORF;ENST00000474221.5_1_11:291984-293434:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENST00000476372.1_1_11:291984-293434:+|nuORF	ENST00000476372.1_1_11:291984-293434:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2374572753906	2	455.23745	908.460347	-0.66915	-0.00030462	0.50227	0.00022865	-0.16689	-7.5973E-05	455.23754411722865	43.556	0.99518	43.318	42.879	43.874	-0.23736					68	26	4	0	0	0	0.34573	2	3989	3989;4003		104.75	3.1845	1	5563300			56149	5536	39198	39263	61521;61522	61521					0.002455056264693667
NSVYTNVL	8	Unmodified	_NSVYTNVL_					0	0	0		ENST00000476372.1_1_11:291984-293434:+|nuORF;ENST00000474221.5_1_11:291984-293434:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENST00000476372.1_1_11:291984-293434:+|nuORF	ENST00000476372.1_1_11:291984-293434:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.2369079589844	2	455.23745	908.460347	-0.81466	-0.00037086	0.55768	0.00025388	-0.25699	-0.00011699	455.2376035140638	43.521	1.4096	43.296	42.485	43.894	-0.22536					75	37	4	0	0	0	0.38451	1	4007	4007		99.375	19.662	1	5516700			56150	5536	39198	39263	61523	61523					0.002455056264693667
NSWPLAVLL	9	Unmodified	_NSWPLAVLL_					0	0	0		ENST00000547586.5_1_12:56391493-56393213:+|nuORF	ENST00000547586.5_1_12:56391493-56393213:+|nuORF	ENST00000547586.5_1_12:56391493-56393213:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.79180908203125	2	506.794935	1011.57532	-1.2623	-0.00063974	-4.3232	-0.002191	-5.5855	-0.0028307	506.7928567473784	44.161	1.3823	44.161	43.765	45.147	0					125	39	6	0	0	0	0.096521	1	4165	4165		111.65	8.8749	1	120750000			56151	16537	39199	39264	61524	61524					0.06999234828288081
NSWRYSSA	8	Unmodified	_NSWRYSSA_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3;MAGT1|p.N112K|1|0.38|ENSG00000102158|chrX:77870862-77870862|G/C|missense_variant;ENST00000509177.1_1_8:15480615-15508356:+|nuORF;nc|ENSG00000102158|Q9H0U3-2|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF;ENSG00000102158|ENST00000618282|MAGT1	nc|ENSG00000104723|Q13454-2|TUSC3;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2716064453125	2	485.722498	969.430444	0.1704	8.2769E-05	0.40147	0.000195	0.57187	0.00027777	485.72255736640057	32.872	0.9157	32.68	32.417	33.333	-0.19261					32	22	3	0	0	0	0.027866	1	2326	2326		66.429	15.094	1	243780			56152	2590;2387	39200	39265	61525	61525					-0.05549433318856245
NSYNTYASAI	10	Unmodified	_NSYNTYASAI_					0	0	0		ENST00000503413.1_1_4:81189541-81207823:+|nuORF;ENSG00000138675|ENST00000312465|FGF5	ENST00000503413.1_1_4:81189541-81207823:+|nuORF	ENST00000503413.1_1_4:81189541-81207823:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3168334960938	2	552.253828	1102.4931	-0.18866	-0.00010419	1.0828	0.00059797	0.89412	0.00049378	552.2541826396172	24.663	0.82478	24.488	24.252	25.077	-0.17484					32	18	3	0	0	0	0.03519	1	1105	1105		36.447	0	1	400750			56153	5267	39201	39266	61526	61526					-0.05404332041325688
NSYPAKLSF	9	Unmodified	_NSYPAKLSF_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2925415039062	2	513.766374	1025.5182	-0.48755	-0.00025049	1.0369	0.00053274	0.54938	0.00028225	513.7666446526234	65.211	1.1075	64.977	64.728	65.835	-0.2345					48	26	3	0	0	0	0.024367	1	7439	7439		36.447	3.6343	1	610300			56154	17847	39202	39267	61527	61527					0.0064576755189591495
NSYPAKLSF	9	Unmodified	_NSYPAKLSF_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.766374	1025.5182	-1.2752	-0.00065516	1.5062	0.00077386	0.23103	0.0001187	513.7669032345127	65.191	1.2284	64.989	64.697	65.926	-0.20254	-0.0065658	0.00014838	NaN	36.447	64	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606050			56155	17847	39202	39267							0.0064576755189591495
NSYPAKLSF	9	Unmodified	_NSYPAKLSF_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|148|3|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.766374	1025.5182	-0.50598	-0.00025995	0.78098	0.00040124	0.275	0.00014129	513.7665396321961	65.214	1.1009	64.962	64.704	65.805	-0.25151	-0.033311	-0.00059685	NaN	36.447	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638960			56156	17847	39202	39267							0.0064576755189591495
NTAKSSETLL	10	Unmodified	_NTAKSSETLL_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3052368164062	2	532.285128	1062.5557	-0.65225	-0.00034718	1.3964	0.00074328	0.74414	0.00039609	532.2854726981373	48.082	0.371	47.984	47.743	48.114	-0.097553					10	9	2	0	0	0	0.03519	1	4742	4742		28.081	0	1	142350	+		56157	24888	39203	39268	61528	61528					0.026928140268637435
NTAKTNLRY	9	Unmodified	_NTAKTNLRY_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.8162231445312	2	540.793455	1079.57236	-0.99651	-0.00053891	0.83368	0.00045085	-0.16283	-8.8059E-05	540.7937810332535	40.846	0.55393	40.869	40.629	41.182	0.023006					21	15	2	0	0	0	0.024523	1	3600	3600		15.642	0	1	361380	+		56158	20709	39204	39269	61529	61529					0.035753597034727136
NTAPPLVL	8	Unmodified	_NTAPPLVL_					0	0	0			REV__nc|ENSG00000198959|P21980-3|TGM2	REV__nc|ENSG00000198959|P21980-3|TGM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.7463684082031	2	412.747453	823.480354	-0.12119	-5.0022E-05	-2.8672	-0.0011834	-2.9884	-0.0012335	412.74615085792476	84.367	2.1052	84.393	83.555	85.66	0.026558					110	49	4	0	0	0	1.0009	1	10487	10487		37.159	3.6435	1	6096900	+		56159	33276	39205	39270	61530	61530					0.06155301357091503
NTAREEEW	8	Unmodified	_NTAREEEW_					0	0	0			REV__nc|ENSG00000137098|Q99932-1|SPAG8	REV__nc|ENSG00000137098|Q99932-1|SPAG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.316650390625	2	517.73052	1033.44649	-0.3644	-0.00018866	0.29366	0.00015203	-0.070741	-3.6625E-05	517.7305654396928	29.223	0.89894	29.05	28.507	29.406	-0.17258					39	20	3	0	0	0	0.027866	1	1768	1768		40.778	15.328	1	551330	+		56160	23726	39206	39271	61531	61531					-0.06889771872624806
NTARHSLVP	9	Unmodified	_NTARHSLVP_					0	0	0		nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7749938964844	2	497.775065	993.535577	0.38265	0.00019047	-1.0577	-0.00052651	-0.67507	-0.00033604	497.77461153467283	100.88	0.9181	100.87	100.62	101.53	-0.0054474					46	21	4	0	0	0	0.37611	1	12840	12840		67.494	1.0644	1	953960			56161	6735	39207	39272	61532	61532					0.038551078775640235
NTARLLHP	8	Unmodified	_NTARLLHP_					0	0	0			REV__ENST00000354371.6_1_2:238006612-238006942:+|nuORF	REV__ENST00000354371.6_1_2:238006612-238006942:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.26513671875	2	461.266876	920.519199	-0.21096	-9.7307E-05	-3.7327	-0.0017218	-3.9436	-0.0018191	461.2649360840451	92.324	2.299	92.201	91.674	93.973	-0.12242					98	53	3	0	0	0	1.0572	1	11364	11364		28.254	2.8041	1	1283700	+		56162	30755	39208	39273	61533	61533					0.0557602671146924
NTAVIQVPLSV	11	Unmodified	_NTAVIQVPLSV_					0	0	0			REV__chr2:20205424-20219262|157|56.06|0.8|6.13|-|0|SDC1,None|1	REV__chr2:20205424-20219262|157|56.06|0.8|6.13|-|0|SDC1,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2726440429688	2	570.834788	1139.65502	0.39376	0.00022477	2.7924	0.001594	3.1861	0.0018187	570.8364310822583	56.912	0.37103	56.71	56.52	56.891	-0.20209					15	9	2	0	0	0	0.02475	1	6192	6192		16.007	0	1	114320	+		56163	19414	39209	39274	61534	61534					0.09078256711586619
NTAYKGTTVE	10	Unmodified	_NTAYKGTTVE_					0	0	0			REV__ENSG00000153820|ENST00000392056|SPHKAP	REV__ENSG00000153820|ENST00000392056|SPHKAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2796020507812	2	542.269478	1082.5244	-0.97427	-0.00052832	-2.1521	-0.001167	-3.1263	-0.0016953	542.2682956757923	53.598	0.35352	53.462	53.244	53.598	-0.13617					17	9	2	0	0	0	0.03519	1	5620	5620		17.468	0	1	576220	+		56164	24912	39210	39275	61535	61535					-0.013557590072423409
NTCEALTSLVC	11	Unmodified	_NTCEALTSLVC_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.2901000976562	2	577.265024	1152.5155	0.036351	2.0984E-05	-0.09483	-5.4742E-05	-0.058479	-3.3758E-05	577.2650352281674	59.83	0.84228	59.654	59.117	59.96	-0.1761					36	21	2	0	0	0	0.024723	1	6601	6601		30.318	8.3578	1	131490	+		56165	23384	39211	39276	61536	61536					-0.05466191959567368
NTCWYWLAT	9	Unmodified	_NTCWYWLAT_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.8040161132812	2	579.257859	1156.50117	0.37572	0.00021764	4.0594	0.0023515	4.4351	0.0025691	579.2620609314497	77.103	0.4202	76.835	76.467	76.887	-0.26806					18	9	3	0	0	0	0.024418	1	9143	9143		37.812	17.815	1	200060	+		56166	21061	39212	39277	61537	61537					-0.07082476325558673
NTDANILFY	9	Unmodified	_NTDANILFY_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.761474609375	2	535.761289	1069.50803	-0.16798	-8.9999E-05	0.27348	0.00014652	0.1055	5.6521E-05	535.7613570246488	77.678	1.4511	77.416	77.099	78.55	-0.26202					103	33	4	0	0	0	0.039744	3	9262	9247;9262;9275		133.81	46.058	1	8607600			56167	3842	39213	39278	61538;61539;61540	61539					-0.023948401733377978
NTDANILFY	9	Unmodified	_NTDANILFY_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.76171875	2	535.761289	1069.50803	0.50292	0.00026944	-0.51266	-0.00027467	-0.0097463	-5.2217E-06	535.7609451964692	77.626	1.0881	77.384	77.077	78.165	-0.24232					85	25	4	0	0	0	0.015901	3	9249	9249;9261;9275		157.33	58.7	1	10107000			56168	3842	39213	39278	61541;61542;61543	61541					-0.023948401733377978
NTDANILFY	9	Unmodified	_NTDANILFY_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.76123046875	2	535.761289	1069.50803	-0.79572	-0.00042631	0.73443	0.00039348	-0.061282	-3.2833E-05	535.7615884615113	77.502	1.5801	77.34	77.059	78.639	-0.16196					100	36	5	0	0	0	0.043667	3	9217	9217;9229;9241		131.03	37.26	1	8976400			56169	3842	39213	39278	61544;61545;61546	61544					-0.023948401733377978
NTDCTHFY	8	Unmodified	_NTDCTHFY_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7685546875	2	500.695092	999.375631	-0.60372	-0.00030228	-1.4768	-0.00073945	-2.0806	-0.0010417	500.6946790700913	39.361	0.2601	39.138	38.926	39.186	-0.22311					8	6	2	0	0	0	0.027866	1	3292	3292		23.042	0	1	60626			56170	7855;17923	39214	39279	61547	61547					-0.12408188181791502
NTDFGDEFY	9	Unmodified	_NTDFGDEFY_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.216796875	2	554.216911	1106.41927	-0.29994	-0.00016623	0.11657	6.4604E-05	-0.18337	-0.00010163	554.2168678945183	70.246	0.60802	69.979	69.662	70.27	-0.26725					45	14	4	0	0	0	0.013065	4	8163	8154;8163;8175;8187		171.53	101.9	1	3987800			56171	3515	39215	39280	61548;61549;61550;61551	61549					-0.12968300203647232
NTDFGDEFY	9	Unmodified	_NTDFGDEFY_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.2167358398438	2	554.216911	1106.41927	-0.037207	-2.0621E-05	-0.30569	-0.00016942	-0.3429	-0.00019004	554.2166331215182	70.25	0.63898	69.999	69.649	70.288	-0.25063					52	15	5	0	0	0	0.014034	4	8172	8160;8172;8183;8196		166.68	100.25	1	4101600			56172	3515	39215	39280	61552;61553;61554;61555	61553					-0.12968300203647232
NTDFGDEFY	9	Unmodified	_NTDFGDEFY_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.2168579101562	2	554.216911	1106.41927	0.082907	4.5948E-05	-0.31512	-0.00017464	-0.23221	-0.0001287	554.2166455693526	70.185	0.56652	69.97	69.646	70.213	-0.21425					51	13	5	0	0	0	0.013293	3	8160	8149;8160;8173		176.09	104.21	1	4629200			56173	3515	39215	39280	61556;61557;61558	61557					-0.12968300203647232
NTDFPNVVI	9	Unmodified	_NTDFPNVVI_					0	0	0		ENST00000513881.5_1_5:122337738-122343441:+|nuORF	ENST00000513881.5_1_5:122337738-122343441:+|nuORF	ENST00000513881.5_1_5:122337738-122343441:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.78350830078125	2	509.763832	1017.51311	-0.042474	-2.1652E-05	1.9067	0.00097196	1.8642	0.00095031	510.26442367244186	49.914	0.36173	49.763	49.634	49.996	-0.1512					12	9	2	0	0	0	0.024397	1	5155	5155		39.253	5.0803	1	154140			56174	15873	39216	39281	61559	61559					0.0050546368928507945
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7371826171875	2	569.738011	1137.46147	-0.58341	-0.00033239	0.096474	5.4965E-05	-0.48693	-0.00027742	569.7380596900302	57.483	0.80404	57.305	56.991	57.795	-0.17776					83	20	6	0	0	0	0.0076046	7	6280	6257;6268;6280;6292;6304;6317;6332		309.22	210.59	1	23996000			56175	5839	39217	39282	61560;61561;61562;61563;61564;61565;61566	61562					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7383422851562	2	569.738011	1137.46147	0.25364	0.00014451	-0.79667	-0.00045389	-0.54303	-0.00030938	569.7375504492168	57.516	0.90482	57.318	57.001	57.905	-0.19801					91	23	6	0	0	0	0.0084586	6	6263	6263;6273;6285;6297;6310;6324		274.96	178.77	1	27265000			56176	5839	39217	39282	61567;61568;61569;61570;61571;61572	61567					-0.10176324795270375
NTDFYQTSY	9	Unmodified	_NTDFYQTSY_					0	0	0		ENST00000522203.5_1_5:143545115-143549519:-|nuORF;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;ENSG00000145817|ENST00000274496|YIPF5;nc|ENSG00000145817|Q969M3-3|YIPF5	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	ENST00000522203.5_1_5:143545115-143549519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.73779296875	2	569.738011	1137.46147	-0.54291	-0.00030932	0.039474	2.249E-05	-0.50344	-0.00028683	569.7380487116661	57.636	1.7609	57.403	57.061	58.822	-0.23363					99	44	5	0	0	0	0.0084586	6	6309	6265;6275;6285;6297;6309;6324		288.7	178.58	1	25132000			56177	5839	39217	39282	61573;61574;61575;61576;61577;61578	61577					-0.10176324795270375
NTDHQTQLLY	10	Unmodified	_NTDHQTQLLY_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	616.7984619140625	2	616.798934	1231.58332	-0.51775	-0.00031935	-0.071338	-4.4001E-05	-0.58909	-0.00036335	616.7989487656138	46.229	1.4263	46.133	45.813	47.239	-0.096649					104	38	5	0	0	0	0.14896	5	4432	4422;4432;4444;4457;4470		127.46	53.487	1	16523000			56178	1145	39218	39283	61579;61580;61581;61582;61583	61580					-0.02321282712887296
NTDHQTQLLY	10	Unmodified	_NTDHQTQLLY_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	616.7984619140625	2	616.798934	1231.58332	-0.80748	-0.00049805	0.39349	0.00024271	-0.41399	-0.00025535	616.7991561001866	46.484	1.5432	46.223	45.854	47.397	-0.26118					128	41	5	0	0	0	0.1587	5	4444	4444;4455;4468;4480;4495		126.24	43.938	1	13397000			56179	1145	39218	39283	61584;61585;61586;61587;61588	61584					-0.02321282712887296
NTDHQTQLLY	10	Unmodified	_NTDHQTQLLY_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	616.7985229492188	2	616.798934	1231.58332	-0.74296	-0.00045826	0.023498	1.4494E-05	-0.71946	-0.00044376	616.7989815426847	46.342	1.6921	46.14	45.819	47.511	-0.20226					115	46	6	0	0	0	0.1169	5	4451	4427;4437;4451;4463;4476		131.62	40.84	1	17502000			56180	1145	39218	39283	61589;61590;61591;61592;61593	61591					-0.02321282712887296
NTDIDVISIN	10	Unmodified	_NTDIDVISIN_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.31787109375	2	552.282586	1102.55062	-0.077977	-4.3065E-05	-4.439	-0.0024516	-4.517	-0.0024946	552.2799454276417	64.44	0.38981	64.238	63.951	64.341	-0.20254					12	9	2	0	0	0	0.03519	1	7314	7314		37.812	11.748	1	88988	+		56181	28198	39219	39284	61594	61594					0.0034451016426828573
NTDKNYLN	8	Unmodified	_NTDKNYLN_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.23504638671875	2	491.235439	980.456324	-1.1418	-0.00056092	-0.472	-0.00023186	-1.6138	-0.00079278	491.2351266537715	40.596	0.83945	40.366	40.046	40.886	-0.2303					56	22	3	0	0	0	0.56311	1	3499	3499		79.713	7.8351	1	2407900			56182	6979	39220	39285	61595	61595					-0.034685838672317004
NTDLGNDLY	9	Unmodified	_NTDLGNDLY_					0	0	0		nc|ENSG00000166477|Q8WVC0-2|LEO1;ENSG00000166477|ENST00000299601|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	nc|ENSG00000166477|Q8WVC0-2|LEO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7329711914062	2	512.732729	1023.4509	0.31677	0.00016242	0.86539	0.00044371	1.1822	0.00060613	512.7332377598119	59.166	1.0475	58.985	58.426	59.473	-0.18134					63	25	4	0	0	0	0.26413	2	6535	6535;6547		80.455	25.69	1	2743600			56183	7569	39221	39286	61596;61597	61596					-0.059883074497065536
NTDLLPTSY	9	Unmodified	_NTDLLPTSY_					0	0	0		ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2533569335938	2	512.253297	1022.49204	-0.099372	-5.0904E-05	0.21735	0.00011134	0.11798	6.0433E-05	512.2533042818275	57.151	1.007	56.926	56.464	57.471	-0.22479					67	26	4	0	0	0	0.80003	1	6235	6235		39.253	4.0521	1	5434400			56184	8150	39222	39287	61598	61598					-0.01830546410246825
NTDLMTSQCY	10	Carbamidomethyl (C)	_NTDLMTSQC(Carbamidomethyl (C))Y_	NTDLMTSQC(1)Y		NTDLMTSQC(120)Y		0	1	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	616.7494506835938	2	616.749738	1231.48492	-1.4848	-0.00091577	0.69624	0.00042941	-0.78859	-0.00048636	616.750282998941	48.762	1.2891	48.482	48.183	49.472	-0.27977					106	34	5	0	0	0	0.19121	1	4834	4834		122.18	26.361	1	8401100	+		56185	28266	39223	39288	61599	61599	368				-0.12155970344633715
NTDLMTSQCY	10	Unmodified	_NTDLMTSQCY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.2383422851562	2	588.239006	1174.46346	-0.8968	-0.00052753	-0.54267	-0.00031922	-1.4395	-0.00084675	588.2389775691996	53.769	1.8175	53.571	53.238	55.055	-0.19739					142	51	6	0	0	0	0.24462	1	5631	5631		115.49	2.0825	1	38905000	+		56186	28266	39223	39289	61600	61600					-0.11679355373325961
NTDLRAALF	9	Unmodified	_NTDLRAALF_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7839660644531	2	510.777274	1019.53999	0.17504	8.9408E-05	-0.1122	-5.7308E-05	0.062845	3.21E-05	510.7765926680404	49.927	0.7466	49.821	49.562	50.309	-0.10558					28	19	2	0	0	0	0.024457	1	5020	5020		21.96	0	1	555200	+		56187	24541	39224	39290	61601	61601					0.03100572300456861
NTDNLLTEY	9	Unmodified	_NTDNLLTEY_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.K411*|1|0.17|ENSG00000164151|chr5:5460563-5460564|-/T|frameshift_variant;ICE1|p.K730Ifs*29|1|0.13|ENSG00000164151|chr5:5461522-5461523|-/TATCTGTATCATTACC|frameshift_variant	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.7532348632812	2	541.753661	1081.49277	-0.55724	-0.00030189	0.3765	0.00020397	-0.18074	-9.7917E-05	541.7537798897059	66.185	0.82726	65.943	65.583	66.41	-0.24145					61	20	4	0	0	0	0.14024	1	7591	7591		101.6	8.4052	1	4136300			56188	7225	39225	39291	61602	61602					-0.044717517611843505
NTDNLLTEY	9	Unmodified	_NTDNLLTEY_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.K411*|1|0.17|ENSG00000164151|chr5:5460563-5460564|-/T|frameshift_variant;ICE1|p.K730Ifs*29|1|0.13|ENSG00000164151|chr5:5461522-5461523|-/TATCTGTATCATTACC|frameshift_variant	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.753661	1081.49277	-0.89401	-0.00048433	0.4181	0.00022651	-0.47591	-0.00025783	541.7539405273933	66.192	0.90044	65.979	65.588	66.488	-0.21327	0.0099113	-0.00028074	NaN	101.6	74	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3907500			56189	7225	39225	39291							-0.044717517611843505
NTDNLLTEY	9	Unmodified	_NTDNLLTEY_					0	0	0		ENSG00000164151|ENST00000296564|ICE1;ENST00000505464.1_1_5:5423001-5437265:+|nuORF;ICE1|p.K411*|1|0.17|ENSG00000164151|chr5:5460563-5460564|-/T|frameshift_variant;ICE1|p.K730Ifs*29|1|0.13|ENSG00000164151|chr5:5461522-5461523|-/TATCTGTATCATTACC|frameshift_variant	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.753661	1081.49277	-1.2107	-0.00065588	1.0472	0.00056734	-0.16344	-8.8543E-05	541.7541160179372	66.23	1.0267	65.984	65.359	66.386	-0.24517	0.015715	0.00040093	NaN	101.6	68	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4016900			56190	7225	39225	39291							-0.044717517611843505
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.7806396484375	2	621.780544	1241.54654	-0.30416	-0.00018912	0.38493	0.00023934	0.08077	5.0221E-05	621.7807230687176	57.25	1.0092	57.083	56.637	57.646	-0.1672					76	26	4	0	0	0	5.488E-06	4	6235	6235;6246;6258;6272		262.84	161.59	1	5900100			56191	7190	39226	39292	61603;61604;61605;61606	61603					-0.06457534538822074
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.7819213867188	2	621.780544	1241.54654	-0.79183	-0.00049234	0.8076	0.00050215	0.015775	9.8086E-06	621.7809818723803	57.25	0.87669	57.048	56.747	57.624	-0.20209					76	23	5	0	0	0	7.5011E-06	4	6229	6229;6239;6251;6265		228.31	132.4	1	6035200			56192	7190	39226	39292	61607;61608;61609;61610	61607					-0.06457534538822074
NTDPWAGYRY	10	Unmodified	_NTDPWAGYRY_					0	0	0		ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	ENST00000513199.5_1_4:99943548-99960531:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.7808227539062	2	621.780544	1241.54654	-0.24918	-0.00015493	0.26105	0.00016232	0.011876	7.3841E-06	621.7806374984978	57.341	0.89659	57.108	56.806	57.703	-0.23256					76	23	4	0	0	0	0.00015509	4	6245	6228;6245;6256;6271		199.89	119.44	1	5043700			56193	7190	39226	39292	61611;61612;61613;61614	61612					-0.06457534538822074
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7780151367188	2	569.778002	1137.54145	-0.5007	-0.00028529	0.22981	0.00013094	-0.27089	-0.00015435	569.7781677148547	25.474	0.91462	25.247	24.975	25.89	-0.22683					70	21	6	0	0	0	0.013924	4	1216	1195;1204;1216;1228		167.23	50.225	1	7547400			56194	7177	39227	39293	61615;61616;61617;61618	61617					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7781372070312	2	569.778002	1137.54145	-0.06651	-3.7896E-05	-0.39873	-0.00022719	-0.46524	-0.00026508	569.7778202860391	25.271	0.94666	25.1	24.825	25.771	-0.17078					58	22	4	0	0	0	0.013442	5	1167	1158;1167;1179;1191;1206		177.3	53.225	1	6138100			56195	7177	39227	39293	61619;61620;61621;61622;61623	61620					-0.02181838401429559
NTDRNIDKY	9	Unmodified	_NTDRNIDKY_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.77783203125	2	569.778002	1137.54145	0.64189	0.00036574	-1.1888	-0.00067736	-0.54692	-0.00031162	569.7773393521264	25.225	1.0574	25.054	24.732	25.79	-0.17151					80	24	5	0	0	0	0.015512	4	1144	1133;1144;1156;1168		159.28	52.268	1	7047300			56196	7177	39227	39293	61624;61625;61626;61627	61625					-0.02181838401429559
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2378234863281	2	483.237981	964.461409	-0.36442	-0.0001761	-1.3998	-0.00067643	-1.7642	-0.00085254	483.237867168085	40.421	1.6805	40.271	39.783	41.464	-0.1497					199	44	7	0	0	0	0.05419	9	3550	3532;3550;3562;3586;3598;3623;3642;3654;3665		176.41	72.03	1	543700000			56197	7773;14295	39228	39294	61628;61629;61630;61631;61632;61633;61634;61635;61636	61629					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2349853515625	2	483.237981	964.461409	0.13606	6.5747E-05	0.19341	9.3464E-05	0.32947	0.00015921	483.23790886384705	41.746	1.9967	41.623	41.456	43.452	-0.12299					104	53	2	0	0	0	0.53593	1	3702	3702		82.241	19.262	1	1119400			56198	7773;14295	39228	39294	61637	61637					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.2380676269531	2	483.237981	964.461409	-0.23056	-0.00011142	-1.7096	-0.00082615	-1.9402	-0.00093756	483.2377584444543	40.575	1.6615	40.35	39.928	41.59	-0.225					198	43	6	0	0	0	0.05419	12	3531	3473;3483;3531;3549;3561;3573;3585;3597;3628;3641;3655;3665		176.41	83.688	1	492780000			56199	7773;14295	39228	39294	61638;61639;61640;61641;61642;61643;61644;61645;61646;61647;61648;61649	61640					-0.022242800046228695
NTDSPLRY	8	Unmodified	_NTDSPLRY_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.238037109375	2	483.237981	964.461409	-1.0752	-0.00051957	-0.84168	-0.00040673	-1.9169	-0.0009263	483.2381671484681	40.59	3.6598	40.36	39.891	43.551	-0.23029					262	98	6	0	0	0	0.030403	11	3567	3461;3543;3555;3567;3579;3591;3610;3622;3634;3647;3665		200.16	79.536	1	496380000			56200	7773;14295	39228	39294	61650;61651;61652;61653;61654;61655;61656;61657;61658;61659;61660	61653					-0.022242800046228695
NTDSSSRGAQP	11	Unmodified	_NTDSSSRGAQP_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.78271484375	2	560.254891	1118.49523	-0.41324	-0.00023152	4.0767	0.002284	3.6634	0.0020524	560.2570865091704	31.232	0.54694	30.991	30.711	31.258	-0.24109					23	13	2	0	0	0	0.024787	1	2026	2026		33.922	0	1	424710	+		56201	36453	39229	39295	61661	61661					-0.05927903303518178
NTDTLSKETDS	11	Unmodified	_NTDTLSKETDS_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.7742919921875	2	605.775322	1209.53609	-1.1142	-0.00067493	-1.2432	-0.00075313	-2.3574	-0.0014281	605.774633816189	69.292	2.1726	69.292	67.908	70.081	0					162	56	7	0	0	0	0.58492	1	8401	8401		70.816	14.382	1	2591400			56202	5327	39230	39296	61662	61662					-0.06029606774563945
NTDTLSKETDS	11	Unmodified	_NTDTLSKETDS_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.7722778320312	2	605.775322	1209.53609	-0.40455	-0.00024507	-3.7823	-0.0022912	-4.1868	-0.0025363	605.7728333326802	57.972	0.53186	57.781	57.56	58.092	-0.19017					28	13	3	0	0	0	0.92638	1	6371	6371		50.034	3.5767	1	3310900			56203	5327	39230	39296	61663	61663					-0.06029606774563945
NTDYLDPPKAQ	11	Unmodified	_NTDYLDPPKAQ_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.520751953125	3	421.20682	1260.59863	-0.018908	-7.9643E-06	-0.46062	-0.00019402	-0.47953	-0.00020198	421.5423687725709	31.66	0.34419	31.419	31.221	31.565	-0.24109					15	8	3	0	0	0	0.02475	1	2144	2144		24.276	6.4428	1	73546	+		56204	36762	39231	39297	61664	61664					-0.021244159157276954
NTDYLDPPKAQ	11	Unmodified	_NTDYLDPPKAQ_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	421.20682	1260.59863	-0.048654	-2.0493E-05	1.3686	0.00057647	1.32	0.00055598	421.20650157241397	31.614	0.34832	31.429	31.172	31.52	-0.18503	0.0049003	0.0010649	NaN	24.276	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54839	+		56205	36762	39231	39297							-0.021244159157276954
NTDYTVLLQ	9	Unmodified	_NTDYTVLLQ_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.77490234375	2	533.774396	1065.53424	-0.73145	-0.00039043	0.5415	0.00028904	-0.18995	-0.00010139	533.7746121985524	50.625	1.4231	50.625	50.21	51.633	0					108	37	4	0	0	0	0.30449	3	5303	5303;5313;5325		75.043	8.614	1	12278000			56206	3525	39232	39298	61665;61666;61667	61665					0.004094289981367183
NTDYTVLLQ	9	Unmodified	_NTDYTVLLQ_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7740478515625	2	533.774396	1065.53424	-0.64929	-0.00034657	0.57723	0.00030811	-0.072063	-3.8466E-05	533.7746059894222	50.512	1.3612	50.593	50.243	51.604	0.08099					106	38	4	0	0	0	0.29609	1	5237	5237		76.17	6.5421	1	11721000			56207	3525	39232	39298	61668	61668					0.004094289981367183
NTDYTVLLQ	9	Unmodified	_NTDYTVLLQ_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	533.774396	1065.53424	-0.16979	-9.063E-05	0.62972	0.00033613	0.45993	0.0002455	533.7746245646101	50.998	1.097	50.721	50.443	51.54	-0.27643	0.055824	0.00016975	NaN	76.17	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2809100			56208	3525	39232	39298							0.004094289981367183
NTEADINGLR	10	Unmodified	_NTEADINGLR_					0	0	0		CON__Q148H6	CON__Q148H6	CON__Q148H6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3267211914062	2	551.778002	1101.54145	-0.099673	-5.4997E-05	-2.3659	-0.0013054	-2.4656	-0.0013604	552.2787701628054	54.201	0.48163	53.955	53.717	54.198	-0.2453					24	15	2	0	0	0	0.03519	1	5695	5695		25.574	0.12388	1	495460		+	56209	539	39233	39299	61669	61669					-0.005258384014496187
NTEEALLLL	9	Unmodified	_NTEEALLLL_					0	0	0		TTC7B|p.S481Vfs*7|1|0.18|ENSG00000165914|chr14:90655011-90655012|-/GTAC|frameshift_variant;ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B	TTC7B|p.S481Vfs*7|1|0.18|ENSG00000165914|chr14:90655011-90655012|-/GTAC|frameshift_variant	TTC7B|p.S481Vfs*7|1|0.18|ENSG00000165914|chr14:90655011-90655012|-/GTAC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7608642578125	2	508.28714	1014.55973	0.32538	0.00016539	-0.66548	-0.00033826	-0.3401	-0.00017287	508.2866998861482	84.354	0.97094	84.216	83.977	84.948	-0.13789					38	22	2	0	0	0	0.024323	1	10197	10197		53.351	0	1	876910			56210	7483	39234	39300	61670	61670					0.053029035205895525
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.754150390625	2	541.753661	1081.49277	-1.1066	-0.00059951	0.30559	0.00016555	-0.80101	-0.00043395	541.7538617819533	38.298	2.2716	38.118	37.739	40.01	-0.17929					164	62	6	0	0	0	0.0085188	9	3130	3121;3130;3142;3154;3166;3178;3190;3203;3217		258.83	133.01	1	66890000			56211	1005	39235	39301	61671;61672;61673;61674;61675;61676;61677;61678;61679	61672					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.7538452148438	2	541.753661	1081.49277	-1.0398	-0.0005633	0.29819	0.00016155	-0.74157	-0.00040175	541.7538363543937	38.26	2.43	38.038	37.724	40.154	-0.22149					174	65	6	0	0	0	0.0095032	9	3135	3114;3123;3135;3147;3159;3172;3184;3196;3209		233.57	107.75	1	71051000			56212	1005	39235	39301	61680;61681;61682;61683;61684;61685;61686;61687;61688	61682					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.7537841796875	2	541.753661	1081.49277	-1.324	-0.00071726	0.4665	0.00025273	-0.85746	-0.00046453	541.7539325159862	38.283	2.4147	38.065	37.755	40.17	-0.21848					167	65	5	0	0	0	0.0089904	9	3118	3108;3118;3129;3141;3153;3165;3178;3189;3203		237.92	99.099	1	74520000			56213	1005	39235	39301	61689;61690;61691;61692;61693;61694;61695;61696;61697	61690					-0.044717517611843505
NTEEEGLKY	9	Unmodified	_NTEEEGLKY_					0	0	0		nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	541.753661	1081.49277	-1.5726	-0.00085198	-2.6248	-0.001422	-4.1974	-0.0022739	541.7519889470698	38.028	0.90024	37.946	37.249	38.149	-0.082512	-0.096132	-0.0031675	NaN	237.92	31	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91046			56214	1005	39235	39301							-0.044717517611843505
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.2642211914062	2	542.26453	1082.51451	-0.37778	-0.00020486	0.096763	5.2471E-05	-0.28102	-0.00015239	542.2645215224816	34.871	0.63644	34.656	34.388	35.024	-0.21555					55	15	5	0	0	0	0.040175	1	2606	2606		133.47	13.912	1	1720200			56215	11034;10651	39236	39302	61698	61698					-0.02344902221943812
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.26416015625	2	542.26453	1082.51451	-0.57247	-0.00031043	0.30229	0.00016392	-0.27018	-0.00014651	542.2645428898794	34.806	0.64613	34.599	34.284	34.93	-0.20696					41	15	3	0	0	0	0.01672	2	2597	2587;2597		200.96	76.968	1	1386400			56216	11034;10651	39236	39302	61699;61700	61700					-0.02344902221943812
NTEGLHHLY	9	Unmodified	_NTEGLHHLY_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.2642822265625	2	542.26453	1082.51451	-1.2105	-0.00065643	0.77418	0.00041981	-0.43636	-0.00023662	542.2649173614545	34.82	0.70048	34.634	34.323	35.023	-0.18675					52	17	4	0	0	0	0.012965	2	2573	2573;2586		172.03	73.402	1	1607400			56217	11034;10651	39236	39302	61701;61702	61701					-0.02344902221943812
NTEGTITSLVR	11	Unmodified	_NTEGTITSLVR_					0	0	0			REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	REV__ENST00000437681.1_1_1:28833842-28834094:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.2935180664062	2	595.822409	1189.63027	-0.52558	-0.00031315	3.6226	0.0021584	3.0971	0.0018453	595.8245188747209	53.448	0.79641	53.251	52.973	53.769	-0.19739					51	22	4	0	0	0	0.024749	1	5563	5563		28.081	7.2443	1	2081700	+		56218	32484	39237	39303	61703	61703					0.04303576838219669
NTEITTYKK	9	Unmodified	_NTEITTYKK_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2454833984375	2	549.295496	1096.57644	0.22415	0.00012313	1.2352	0.00067849	1.4593	0.00080161	549.2961985232956	78.515	0.59792	78.283	77.791	78.389	-0.23141					29	13	3	0	0	0	0.024323	1	9360	9360		53.351	17.733	1	477620			56219	5706	39238	39304	61704	61704					0.03201404406513575
NTELLRPID	9	Unmodified	_NTELLRPID_					0	0	0		nc|ENSG00000164122|Q8WWX0-2|ASB5;ENSG00000164122|ENST00000296525|ASB5	nc|ENSG00000164122|Q8WWX0-2|ASB5	nc|ENSG00000164122|Q8WWX0-2|ASB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7980346679688	2	535.795663	1069.57677	-0.25573	-0.00013702	4.1602	0.002229	3.9045	0.002092	535.7977510474138	89.081	1.3287	89.081	88.725	90.054	0					73	31	4	0	0	0	0.56934	1	11262	11262		54.776	3.5836	1	2984600			56220	7219	39239	39305	61705	61705					0.04476824126390966
NTEMPRQPK	9	Unmodified	_NTEMPRQPK_					0	0	0		nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.268798828125	2	550.77949	1099.54443	-0.060129	-3.3118E-05	2.1781	0.0011996	2.1179	0.0011665	551.28147968089	90.852	0.20871	90.863	90.7	90.909	0.011276					6	4	2	0	0	0	0.024541	1	11402	11402		30.318	18.111	1	57770			56221	7150	39240	39306	61706	61706					-0.001362865482633424
NTERLSTI	8	Unmodified	_NTERLSTI_					0	0	0		ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.2565002441406	2	467.253631	932.49271	0.96969	0.00045309	3.3884	0.0015832	4.3581	0.0020363	467.2551014249325	76.425	1.6688	76.437	75.863	77.531	0.011635					117	40	4	0	0	0	0.56592	1	9398	9398		79.451	2.6769	1	3185600			56222	6085	39241	39307	61707	61707					0.023762930294765283
NTESLKSPKV	10	Unmodified	_NTESLKSPKV_					0	0	0		nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2680053710938	2	551.808771	1101.60299	0.041765	2.3046E-05	3.7874	0.0020899	3.8292	0.002113	551.8104752729589	90.72	1.8024	90.731	90.158	91.961	0.011276					78	42	3	0	0	0	0.03519	1	11375	11375		23.523	0	1	351470			56223	3312	39242	39308	61708	61708					0.05625093297862804
NTEWTMGLRS	10	Unmodified	_NTEWTMGLRS_					0	0	0			REV__ENST00000379757.8_1_6:7899909-7910954:-|nuORF	REV__ENST00000379757.8_1_6:7899909-7910954:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.2645874023438	2	597.78223	1193.54991	-0.50402	-0.00030129	-2.5875	-0.0015467	-3.0915	-0.001848	597.7805429582232	42.579	0.57081	42.456	42.234	42.805	-0.12299					35	14	3	0	0	0	0.03519	1	3895	3895		29.17	0	1	811540	+		56224	31447	39243	39309	61709	61709					-0.039126077564560546
NTFGWIRAE	9	Unmodified	_NTFGWIRAE_					0	0	0		ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	ENSG00000170385|ENST00000367001|SLC30A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.2767944335938	2	547.274898	1092.53524	-1.2559	-0.0006873	4.0861	0.0022362	2.8302	0.0015489	547.2771449491971	30.547	4.1876	30.621	29.523	33.711	0.074314					244	105	4	0	0	0	0.70156	1	1938	1938		45.972	5.1941	1	4201100			56225	8033	39244	39310	61710	61710					-0.007323118423073538
NTFHPLTI	8	Unmodified	_NTFHPLTI_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2686767578125	2	471.75581	941.497067	0.41196	0.00019434	0.81616	0.00038503	1.2281	0.00057937	471.7559063925286	67.171	0.44716	67.195	66.942	67.389	0.023911					16	10	2	0	0	0	0.027866	1	7901	7901		38.806	12.01	1	132550	+		56226	25846	39245	39311	61711	61711					0.023978022430469537
NTFKSLESP	9	Unmodified	_NTFKSLESP_					0	0	0			REV__ENSG00000104643|ENST00000221086|MTMR9	REV__ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.78460693359375	2	511.761289	1021.50803	-0.48816	-0.00024982	-1.0318	-0.00052804	-1.52	-0.00077786	511.7606594303568	47.958	1.0363	47.682	47.044	48.08	-0.27598					48	27	2	0	0	0	0.024495	1	4654	4654		14.137	0	1	1093200	+		56227	21454	39246	39312	61712	61712					-0.0018684017333043812
NTFLLRILT	9	Unmodified	_NTFLLRILT_					0	0	0			REV__ENSG00000148848|ENST00000448723|ADAM12	REV__ENSG00000148848|ENST00000448723|ADAM12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7295532226562	2	545.834591	1089.65463	-0.34641	-0.00018908	-0.18494	-0.00010094	-0.53135	-0.00029003	545.8346433782783	61.801	0.47945	61.587	61.334	61.813	-0.21375					38	11	4	0	0	0	0.024466	1	6901	6901		39.253	8.7492	1	406170	+		56228	24644	39247	39313	61713	61713					0.11338881782421595
NTFLQNVQI	9	Unmodified	_NTFLQNVQI_					0	0	0		MXI1|p.H65Q|1|0.14|ENSG00000119950|chr10:110208003-110208003|C/G|missense_variant;ENSG00000119950|ENST00000332674|MXI1	MXI1|p.H65Q|1|0.14|ENSG00000119950|chr10:110208003-110208003|C/G|missense_variant	MXI1|p.H65Q|1|0.14|ENSG00000119950|chr10:110208003-110208003|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.7930908203125	2	538.790381	1075.56621	-0.8734	-0.00047058	0.24774	0.00013348	-0.62567	-0.0003371	538.7905007265798	51.209	0.71737	51.06	50.758	51.475	-0.14916					57	18	5	0	0	0	0.40693	1	5404	5404		65.465	1.2581	1	4230100			56229	3779	39248	39314	61714	61714					0.03144841471953441
NTFPFFSE	8	Unmodified	_NTFPFFSE_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;TBC1D2-GABBR2|1|fusion	nc|ENSG00000095383|Q9BYX2-4|TBC1D2;TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7685546875	2	494.724175	987.433798	0.4239	0.00020971	-1.8499	-0.00091517	-1.426	-0.00070545	494.7218318786902	60.126	0.36897	59.929	59.651	60.02	-0.19742					16	9	2	0	0	0	0.027866	1	6687	6687		31.955	6.3808	1	124030			56230	38057;2025	39249	39315	61715	61715					-0.06042183264844425
NTFVLGHEV	9	Unmodified	_NTFVLGHEV_					0	0	0			REV__ENST00000532168.2_1_11:112151222-112151354:+|nuORF	REV__ENST00000532168.2_1_11:112151222-112151354:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.797607421875	2	508.263999	1014.51345	-0.64409	-0.00032737	4.3301	0.0022008	3.686	0.0018735	508.2660556778704	57.586	0.91808	57.681	57.204	58.122	0.095306					41	24	2	0	0	0	0.024288	1	6410	6410		52.937	5.2794	1	1641700	+		56231	34578	39250	39316	61716	61716					0.006768834091417375
NTGKGWVL	8	Unmodified	_NTGKGWVL_					0	0	0			REV__ENSG00000066629|ENST00000262233|EML1	REV__ENSG00000066629|ENST00000262233|EML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.75262451171875	2	437.742702	873.470852	0.68867	0.00030146	-2.2232	-0.0009732	-1.5345	-0.00067174	437.74153269333493	49.654	0.26324	49.473	49.307	49.57	-0.18071					9	6	2	0	0	0	0.027866	1	4984	4984		17.365	5.8539	1	77395	+		56232	20340	39251	39317	61717	61717					0.029055330715550554
NTGKLIHS	8	Unmodified	_NTGKLIHS_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.73779296875	2	435.245609	868.476666	-0.27879	-0.00012134	-0.16055	-6.988E-05	-0.43934	-0.00019122	435.2452628604757	41.13	0.5406	40.995	40.674	41.215	-0.13553					20	13	2	0	0	0	0.027866	1	3569	3569		40.778	0	1	121980			56233	18192	39252	39318	61718	61718					0.03716631583245089
NTGKLIHS	8	Unmodified	_NTGKLIHS_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7381896972656	2	435.245609	868.476666	-0.16725	-7.2796E-05	0.037828	1.6464E-05	-0.12943	-5.6332E-05	435.2455328995463	41.356	0.34999	41.128	40.847	41.197	-0.2278					13	8	2	0	0	0	0.027866	1	3598	3598		49.442	0	1	171360			56234	18192	39252	39318	61719	61719					0.03716631583245089
NTGRIGQLL	9	Unmodified	_NTGRIGQLL_					0	0	0		ENSG00000163810|ENST00000296125|TGM4	ENSG00000163810|ENST00000296125|TGM4	ENSG00000163810|ENST00000296125|TGM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.76092529296875	2	486.285266	970.555979	0.47798	0.00023244	-1.1214	-0.00054531	-0.6434	-0.00031287	486.2843987733384	25.396	0.33046	25.225	25.034	25.365	-0.17151					15	7	3	0	0	0	0.024541	1	1181	1181		24.203	0	1	59298			56235	7148	39253	39319	61720	61720					0.06952278537380607
NTHILYRIY	9	Unmodified	_NTHILYRIY_					0	0	0		ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.7752075195312	2	596.827298	1191.64004	0.025228	1.5057E-05	-0.64733	-0.00038635	-0.62211	-0.00037129	596.8267751776073	68.623	0.40373	68.393	68.156	68.559	-0.23048					14	9	2	0	0	0	0.024427	1	7930	7930		26.693	0	1	280640			56236	13013	39254	39320	61721	61721					0.05188809634296376
NTHILYRIY	9	Unmodified	_NTHILYRIY_					0	0	0		ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	596.827298	1191.64004	-1.441	-0.00086003	1.6008	0.0009554	0.1598	9.5375E-05	596.827913002404	68.357	0.57803	68.357	68.102	68.68	0	-0.039357	0.0013713	NaN	19.997	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189870			56237	13013	39254	39320							0.05188809634296376
NTHILYRIY	9	Unmodified	_NTHILYRIY_					0	0	0		ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	596.827298	1191.64004	-0.5143	-0.00030695	0.66841	0.00039893	0.15411	9.1977E-05	596.8270843368431	68.72	0.58143	68.427	68.171	68.753	-0.29267	0.030558	0.00025836	NaN	19.997	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133140			56238	13013	39254	39320							0.05188809634296376
NTHILYRIY	9	Unmodified	_NTHILYRIY_					0	0	0		ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	596.827298	1191.64004	-0.2223	-0.00013268	0.26327	0.00015713	0.040971	2.4453E-05	596.8276196995666	68.455	0.44995	68.473	68.276	68.726	0.018921	0.076835	-0.00022523	NaN	19.997	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137300			56239	13013	39254	39320							0.05188809634296376
NTHIPKGWA	9	Unmodified	_NTHIPKGWA_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2721557617188	2	512.272158	1022.52976	0.13357	6.8426E-05	-1.7758	-0.00090972	-1.6423	-0.00084129	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	0.85329	1	13069	13069		35.618	3.6634	1	236480			56240	5869	39255	39321	61722	61722					0.01940009365887363
NTHLVGGRLKL	11	Unmodified	_NTHLVGGRLKL_					0	0	0		ENST00000542104.5_2_12:65090281-65090509:+|nuORF	ENST00000542104.5_2_12:65090281-65090509:+|nuORF	ENST00000542104.5_2_12:65090281-65090509:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3663330078125	2	604.367121	1206.71969	-1.0438	-0.00063086	0.55081	0.00033289	-0.49303	-0.00029797	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.0341	1	13165	13165		26.063	10.057	1	4517100			56241	16448	39256	39322	61723	61723					0.12459876308275852
NTHLVGGRLKL	11	Unmodified	_NTHLVGGRLKL_					0	0	0		ENST00000542104.5_2_12:65090281-65090509:+|nuORF	ENST00000542104.5_2_12:65090281-65090509:+|nuORF	ENST00000542104.5_2_12:65090281-65090509:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.3668212890625	2	604.367121	1206.71969	-0.25622	-0.00015485	-0.39433	-0.00023832	-0.65055	-0.00039317	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	1.0471	1	12889	12889		29.17	0	1	4809400			56242	16448	39256	39322	61724	61724					0.12459876308275852
NTHLVRSL	8	Unmodified	_NTHLVRSL_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1;REV__NOTCH1|p.D1942Rfs*51|1|0.61|ENSG00000148400|chr9:136500658-136500662|GCATC/-|frameshift_variant	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2723083496094	2	470.272158	938.529764	-0.81684	-0.00038414	1.3049	0.00061364	0.48803	0.00022951	470.2727082504141	91.182	1.3816	91.182	90.719	92.101	0					75	32	4	0	0	0	1.043	1	11566	11566		30.504	3.7075	1	4597800	+		56243	24614;37291	39257	39323	61725	61725					0.05804009365908769
NTHTHKKN	8	Unmodified	_NTHTHKKN_					0	0	0		ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2594909667969	2	490.25704	978.499526	-0.12543	-6.1494E-05	1.9518	0.00095689	1.8264	0.00089539	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	1.0106	1	13489	13489		35.618	0	1	7056700			56244	13552	39258	39324	61726	61726					0.009416507007131258
NTHTHKKN	8	Unmodified	_NTHTHKKN_					0	0	0		ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2582092285156	2	490.25704	978.499526	-0.68729	-0.00033695	2.4859	0.0012187	1.7986	0.00088179	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	1.043	2	13097	13097;13115		30.504	1.3541	1	5001000			56245	13552	39258	39324	61727;61728	61727					0.009416507007131258
NTHTHKKN	8	Unmodified	_NTHTHKKN_					0	0	0		ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2576904296875	2	490.25704	978.499526	0.70772	0.00034696	1.421	0.00069665	2.1287	0.0010436	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	0.89627	1	13084	13084		51.335	12.529	1	4976900			56246	13552	39258	39324	61729	61729					0.009416507007131258
NTHVVTVQV	9	Unmodified	_NTHVVTVQV_					0	0	0		ENST00000540159.3_1_10:133783899-133784124:-|nuORF	ENST00000540159.3_1_10:133783899-133784124:-|nuORF	ENST00000540159.3_1_10:133783899-133784124:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7660217285156	2	498.777274	995.539994	0.067208	3.3522E-05	-0.54906	-0.00027386	-0.48185	-0.00024033	498.7768938968907	41.743	1.1326	41.766	41.358	42.49	0.023006					75	32	4	0	0	0	0.024261	1	3732	3732		37.812	0	1	1695600			56247	16414	39259	39325	61730	61730					0.042045723004889624
NTIKHIERHVH	11	Unmodified	_NTIKHIERHVH_					0	0	0			REV__ENST00000531309.1_1_11:12020077-12023945:-|nuORF	REV__ENST00000531309.1_1_11:12020077-12023945:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7609558105469	3	461.924982	1382.75312	0.018586	8.5856E-06	1.2907	0.0005962	1.3093	0.00060479	462.26138884883676	49.045	0.4865	49.045	48.654	49.141	0					20	13	2	0	0	0	0.024767	1	4988	4988		25.068	3.2874	1	199630	+		56248	20155	39260	39326	61731	61731					0.07704878080153321
NTILLFYR	8	Unmodified	_NTILLFYR_					0	0	0			REV__ENST00000503601.1_1_4:2083186-2091962:-|nuORF	REV__ENST00000503601.1_1_4:2083186-2091962:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2763061523438	2	520.300384	1038.58622	-1.2873	-0.0006698	-4.0527	-0.0021086	-5.34	-0.0027784	520.2979428812621	91.83	0.58975	91.83	91.511	92.101	0					22	13	2	0	0	0	0.027866	1	11643	11643		30.504	1.3541	1	93877	+		56249	33959	39261	39327	61732	61732					0.06846637202556849
NTILLFYR	8	Unmodified	_NTILLFYR_					0	0	0			REV__ENST00000503601.1_1_4:2083186-2091962:-|nuORF	REV__ENST00000503601.1_1_4:2083186-2091962:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2642822265625	2	520.300384	1038.58622	-0.61864	-0.00032188	1.6373	0.00085188	1.0186	0.00053	520.2999231328228	56.384	0.21696	56.219	56.058	56.275	-0.16431					7	5	2	0	0	0	0.027866	1	6226	6226		31.955	0	1	66423	+		56250	33959	39261	39327	61733	61733					0.06846637202556849
NTIMGNKKV	9	Unmodified	_NTIMGNKKV_					0	0	0		ENSG00000041802|ENST00000265245|LSG1;LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant;ENST00000466391.1_1_3:194371468-194371945:-|nuORF	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7513732910156	2	502.781502	1003.54845	-0.32101	-0.0001614	0.88972	0.00044734	0.56871	0.00028594	502.7816647023054	34.066	0.41035	33.859	33.75	34.16	-0.20696					14	10	2	0	0	0	0.024427	1	2463	2463		19.997	0	1	150850			56251	1072	39262	39328	61734	61734					0.04681802945447089
NTIRPGNTIA	10	Unmodified	_NTIRPGNTIA_					0	0	0			REV__ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	REV__ZBTB38|p.H1095Lfs*26|1|0.25|ENSG00000177311|chr3:141445671-141445672|CA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7935791015625	2	528.793455	1055.57236	-1.1911	-0.00062982	1.3905	0.00073528	0.19943	0.00010546	528.7940733424088	37.228	0.66247	37.008	36.767	37.429	-0.2195					41	16	4	0	0	0	0.811	1	2977	2977		59.931	1.1488	1	1800700	+		56252	27104	39263	39329	61735	61735					0.04679359703482078
NTIRYRAE	8	Unmodified	_NTIRYRAE_					0	0	0		ENST00000592659.1_1_19:11688743-11689709:-|nuORF;ENST00000591319.1_1_19:11688076-11689734:-|nuORF	ENST00000592659.1_1_19:11688743-11689709:-|nuORF	ENST00000592659.1_1_19:11688743-11689709:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.7724304199219	2	511.772522	1021.53049	-0.68931	-0.00035277	0.27409	0.00014027	-0.41522	-0.0002125	511.7725783875333	31.686	1.1935	31.686	31.3	32.494	0					47	29	3	0	0	0	0.67154	1	2138	2138		69.628	0	1	1766400			56253	17352	39264	39330	61736	61736					0.020588040149391418
NTITELTQLL	10	Unmodified	_NTITELTQLL_					0	0	0			REV__SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant	REV__SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.326416015625	2	573.324254	1144.63395	-0.18255	-0.00010466	2.5933	0.0014868	2.4108	0.0013822	573.3255985273842	72.924	0.87424	72.659	72.343	73.217	-0.26479					47	20	4	0	0	0	0.99657	1	8569	8569		46.457	3.5925	1	1230800	+		56254	25842	39265	39331	61737	61737					0.06742246612111558
NTIYTMNTP	9	Unmodified	_NTIYTMNTP_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8087768554688	2	527.747324	1053.4801	-0.80735	-0.00042608	3.7429	0.0019753	2.9356	0.0015493	527.7493430414655	57.456	0.26164	57.456	57.305	57.567	0					10	6	2	0	0	0	0.023473	1	6460	6460		85.161	10.118	1	273150	+		56255	36907	39266	39332	61738	61738					-0.04450486425071176
NTIYTMNTP	9	Unmodified	_NTIYTMNTP_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.747324	1053.4801	-0.78294	-0.00041319	-0.9159	-0.00048337	-1.6988	-0.00089656	527.7487403804978	57.285	0.25557	57.118	57.036	57.291	-0.1672	-0.25333	-0.0035544	NaN	85.161	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66554	+		56256	36907	39266	39332							-0.04450486425071176
NTIYVGRVK	9	Unmodified	_NTIYVGRVK_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3072509765625	2	525.308741	1048.60293	0.20448	0.00010741	-0.29455	-0.00015473	-0.090073	-4.7316E-05	525.3081619470499	48.201	0.6993	48.014	47.635	48.334	-0.18684					37	18	4	0	0	0	0.97973	1	4758	4758		24.519	0.99649	1	2002400			56257	1698	39267	39333	61739	61739					0.08057138088520333
NTKESILSSV	10	Unmodified	_NTKESILSSV_					0	0	0			REV__ENSG00000145780|ENST00000274457|FEM1C	REV__ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2905883789062	2	539.292953	1076.57135	-1.3477	-0.0007268	-1.7067	-0.00092039	-3.0544	-0.0016472	539.2918754225677	65.458	0.57505	65.207	64.986	65.561	-0.25112					25	13	3	0	0	0	0.94316	1	7481	7481		51.193	0	1	1471600	+		56258	24432	39268	39334	61740	61740					0.036131005439074215
NTKGSQTSRS	10	Unmodified	_NTKGSQTSRS_					0	0	0		ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7748413085938	2	533.267801	1064.52105	0.26105	0.00013921	3.583	0.0019107	3.844	0.0020499	533.2698738505239	84.905	1.0922	84.768	84.021	85.113	-0.13753					33	25	2	0	0	0	0.03519	1	10180	10180		29.17	6.1276	1	302830			56259	2273	39269	39335	61741	61741					-0.008630090612541608
NTKKRGLTG	9	Unmodified	_NTKKRGLTG_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7906188964844	2	487.790715	973.566878	0.56547	0.00027583	-0.78822	-0.00038449	-0.22275	-0.00010866	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.97455	1	10242	10242		25.574	0.12388	1	2408700			56260	3150	39270	39336	61742	61742					0.07903680911658739
NTKKRGLTG	9	Unmodified	_NTKKRGLTG_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7908630371094	2	487.790715	973.566878	0.33726	0.00016451	-0.60673	-0.00029596	-0.26947	-0.00013144	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.77768	1	9973	9973		40.778	5.1599	1	1999500			56261	3150	39270	39336	61743	61743					0.07903680911658739
NTKKSNKSD	9	Unmodified	_NTKKSNKSD_					0	0	0			REV__ENSG00000183035|ENST00000329312|CYLC1	REV__ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2920227050781	2	511.26727	1020.51999	-0.44817	-0.00022913	-3.6292	-0.0018555	-4.0773	-0.0020846	511.26508657568206	62.451	0.27147	62.192	62.017	62.289	-0.25824					13	6	3	0	0	0	0.024477	1	7009	7009		20.947	4.4738	1	118540	+		56262	27528	39271	39337	61744	61744					0.010547765698674993
NTKLELRK	8	Unmodified	_NTKLELRK_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3079833984375	2	501.308741	1000.60293	-0.0097929	-4.9093E-06	0.53408	0.00026774	0.52428	0.00026283	501.3090440592564	103.4	0.39819	103.23	103	103.39	-0.17034					16	9	2	0	0	0	1.0284	1	12844	12844		32.812	0	1	162840			56263	5365	39272	39338	61745	61745					0.10265138088516323
NTKLIAKIA	9	Unmodified	_NTKLIAKIA_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7677917480469	2	486.316035	970.617516	-0.018866	-9.1746E-06	-1.9497	-0.00094819	-1.9686	-0.00095736	486.3151268026166	46.692	0.48712	46.692	46.48	46.967	0					16	12	2	0	0	0	0.024292	1	4661	4661		32.812	0	1	155060	+		56264	20707	39273	39339	61746	61746					0.13103210236647556
NTKLLSGT	8	Unmodified	_NTKLLSGT_					0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.2393493652344	2	417.239993	832.465432	0.76123	0.00031762	-2.7213	-0.0011354	-1.9601	-0.00081782	417.23876862554744	87.737	1.3193	87.737	87.321	88.64	0					55	31	2	0	0	0	0.95679	1	11049	11049		44.117	5.3107	1	3074400	+		56265	26832	39274	39340	61747	61747					0.04249809489101608
NTKLLSGT	8	Unmodified	_NTKLLSGT_					0	0	0			REV__ENSG00000174106|ENST00000308330|LEMD3	REV__ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.2389831542969	2	417.239993	832.465432	0.69179	0.00028864	-2.5084	-0.0010466	-1.8166	-0.00075797	417.23885776731845	87.824	1.3614	87.789	87.405	88.766	-0.035355					56	32	2	0	0	0	1.0574	1	11011	11011		27.882	0	1	3093200	+		56266	26832	39274	39340	61748	61748					0.04249809489101608
NTKNFTIHG	9	Unmodified	_NTKNFTIHG_					0	0	0			REV__nc|ENSG00000171189|P39086-2|GRIK1	REV__nc|ENSG00000171189|P39086-2|GRIK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2898559570312	2	516.267073	1030.51959	-0.63163	-0.00032609	0.56904	0.00029378	-0.062594	-3.2315E-05	516.2672343074162	33.857	0.50272	33.857	33.626	34.129	0					17	12	2	0	0	0	0.024344	1	2519	2519		37.812	17.815	1	68792	+		56267	26552	39275	39341	61749	61749					0.005554016406676965
NTKNYKHK	8	Unmodified	_NTKNYKHK_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.297119140625	2	516.78289	1031.55123	-0.61468	-0.00031765	0.15389	7.953E-05	-0.46078	-0.00023812	516.7830989422713	27.133	0.46189	26.89	26.614	27.076	-0.24217					16	10	2	0	0	0	0.027866	1	1441	1441		56.721	0	1	283350	+		56268	28058	39276	39342	61750	61750					0.03671394394609706
NTKPIAQLI	9	Unmodified	_NTKPIAQLI_					0	0	0		ENSG00000223658|ENST00000475092|C1GALT1C1L	ENSG00000223658|ENST00000475092|C1GALT1C1L	ENSG00000223658|ENST00000475092|C1GALT1C1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.3213806152344	2	499.305667	996.596781	0.045126	2.2532E-05	-0.55595	-0.00027759	-0.51083	-0.00025506	499.305530544593	48.906	0.31508	48.906	48.69	49.005	0					14	8	2	0	0	0	0.024405	1	4985	4985		53.351	2.016	1	103150			56269	10643	39277	39343	61751	61751					0.09834619856997051
NTKTVLAS	8	Unmodified	_NTKTVLAS_					0	0	0			REV__nc|ENSG00000168959|P41594-3|GRM5	REV__nc|ENSG00000168959|P41594-3|GRM5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.2392883300781	2	417.239993	832.465432	0.31115	0.00012982	-2.4499	-0.0010222	-2.1387	-0.00089236	417.23890073393284	87.912	0.94289	87.775	87.372	88.315	-0.13744					37	22	2	0	0	0	1.0009	1	10693	10693		37.159	1.5408	1	1894000	+		56270	26307	39278	39344	61752	61752					0.042498094890902394
NTKVIAVKT	9	Unmodified	_NTKVIAVKT_					0	0	0			REV__ENSG00000162620|ENST00000354431|LRRIQ3	REV__ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2662048339844	2	487.305667	972.596781	0.97482	0.00047503	-1.261	-0.00061449	-0.28618	-0.00013946	487.30494734274015	19.775	0.68029	19.575	19.355	20.035	-0.2001					28	13	4	0	0	0	0.024367	1	460	460		36.447	0	1	646380	+		56271	25465	39279	39345	61753	61753					0.10938619856995047
NTKVKTSVD	9	Unmodified	_NTKVKTSVD_					0	0	0			REV__ENST00000549040.5_1_12:106977470-107075774:+|nuORF	REV__ENST00000549040.5_1_12:106977470-107075774:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2660217285156	2	496.274564	990.534574	0.33913	0.0001683	3.7384	0.0018553	4.0775	0.0020236	496.2761777732945	86.906	1.189	86.927	86.286	87.476	0.021255					50	27	3	0	0	0	0.024447	1	10883	10883		32.812	10.853	1	414980	+		56272	30842	39280	39346	61754	61754					0.038928487179987314
NTLHKISI	8	Unmodified	_NTLHKISI_					0	0	0			REV__nc|ENSG00000165566|Q8N7J2-2|AMER2	REV__nc|ENSG00000165566|Q8N7J2-2|AMER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.28778076171875	2	463.276909	924.539266	0.85677	0.00039692	-0.76643	-0.00035507	0.090345	4.1855E-05	463.27642517842025	59.227	0.66402	59.227	58.895	59.559	0					30	17	2	0	0	0	0.027866	1	6787	6787		42.396	15.703	1	676350	+		56273	36875	39281	39347	61755	61755					0.07397777651419801
NTLIQIVVNA	10	Unmodified	_NTLIQIVVNA_					0	0	0			REV__ENST00000357219.3_1_6:37186200-37186806:-|nuORF	REV__ENST00000357219.3_1_6:37186200-37186806:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.3084106445312	2	542.821681	1083.62881	-0.70641	-0.00038346	4.0223	0.0021834	3.3159	0.0017999	542.823893088007	80.305	0.24634	80.159	79.995	80.241	-0.146					8	5	2	0	0	0	0.03519	1	9592	9592		20.947	1.587	1	81947	+		56274	26703	39282	39348	61756	61756					0.09033987540146882
NTLKIFPS	8	Unmodified	_NTLKIFPS_					0	0	0		ENST00000375643.7_1_9:94972954-94973008:-|nuORF	ENST00000375643.7_1_9:94972954-94973008:-|nuORF	ENST00000375643.7_1_9:94972954-94973008:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2743835449219	2	460.26601	918.517468	0.0097606	4.4925E-06	3.9557	0.0018207	3.9655	0.0018252	460.26784286073314	34.543	0.44155	34.319	34.179	34.621	-0.22412					15	10	2	0	0	0	0.027866	1	2540	2540		35.618	0	1	71469			56275	13165	39283	39349	61757	61757					0.05494972902852169
NTLLLLRVE	9	Unmodified	_NTLLLLRVE_					0	0	0			REV__ENSG00000170191|ENST00000304788|NANP	REV__ENSG00000170191|ENST00000304788|NANP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8154296875	2	535.832049	1069.64954	-0.39259	-0.00021036	1.8133	0.00097165	1.4208	0.00076129	535.8319056866791	71.551	0.14451	71.561	71.434	71.579	0.010735					5	3	2	0	0	0	0.024515	1	8583	8583		28.081	17.816	1	147590	+		56276	26443	39284	39350	61758	61758					0.11750577919792704
NTLNQNLL	8	Unmodified	_NTLNQNLL_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;CEP192|p.S1333F|1|0.16|ENSG00000101639|chr18:13056588-13056588|C/T|missense_variant	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2561950683594	2	465.256174	928.497795	0.72687	0.00033818	-0.8808	-0.0004098	-0.15393	-7.1617E-05	465.25576941565913	59.241	0.8159	59.241	58.895	59.711	0					80	21	5	0	0	0	0.6248	1	6757	6757		73.975	7.5455	1	14942000			56277	2342	39285	39351	61759	61759					0.03068596892092046
NTLNQNLL	8	Unmodified	_NTLNQNLL_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;CEP192|p.S1333F|1|0.16|ENSG00000101639|chr18:13056588-13056588|C/T|missense_variant	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2563171386719	2	465.256174	928.497795	1.0038	0.00046704	-1.0929	-0.00050849	-0.089099	-4.1454E-05	465.25569371198	59.102	0.80449	59.188	58.813	59.617	0.085682					67	21	4	0	0	0	0.71833	1	6656	6656		65.803	3.6958	1	14951000			56278	2342	39285	39351	61760	61760					0.03068596892092046
NTLNVLNVE	9	Unmodified	_NTLNVLNVE_					0	0	0		ENST00000395505.6_1_9:95609873-95609993:-|nuORF	ENST00000395505.6_1_9:95609873-95609993:-|nuORF	ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80255126953125	2	508.274564	1014.53457	0.066696	3.39E-05	0.068733	3.4935E-05	0.13543	6.8835E-05	508.27450678698926	37.477	0.58009	37.284	36.889	37.469	-0.193					28	14	3	0	0	0	0.024511	1	2963	2963		13.454	0	1	347350			56279	13523	39286	39352	61761	61761					0.02788848718000736
NTLQKAKIP	9	Unmodified	_NTLQKAKIP_					0	0	0		nc|ENSG00000088926|P03951-2|F11;ENSG00000088926|ENST00000403665|F11	nc|ENSG00000088926|P03951-2|F11	nc|ENSG00000088926|P03951-2|F11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76812744140625	2	506.811116	1011.60768	-0.44318	-0.00022461	-0.051607	-2.6155E-05	-0.49478	-0.00025076	506.8110730740471	61.074	1.0538	60.861	60.493	61.547	-0.21339					73	27	4	0	0	0	0.023837	1	7018	7018		54.776	0	1	3431300			56280	1885	39287	39353	61762	61762					0.10234022231270501
NTLRYGQVT	9	Unmodified	_NTLRYGQVT_					0	0	0			REV__RIOK2|p.S154Vfs*5|1|0.3|ENSG00000058729|chr5:97177158-97177161|ATAT/-|frameshift_variant	REV__RIOK2|p.S154Vfs*5|1|0.3|ENSG00000058729|chr5:97177158-97177161|ATAT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3053588867188	2	526.28018	1050.54581	-0.41856	-0.00022028	-2.6938	-0.0014177	-3.1124	-0.001638	526.2788244282135	65.794	0.98294	65.543	64.783	65.766	-0.25112					46	23	3	0	0	0	0.024374	1	7507	7507		32.812	9.7757	1	298860	+		56281	20235	39288	39354	61763	61763					0.022556708121328484
NTLSKLFFPP	10	Unmodified	_NTLSKLFFPP_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.2486572265625	2	582.326599	1162.63865	0.49706	0.00028945	-0.59758	-0.00034799	-0.10052	-5.8538E-05	582.3261364577136	79.493	0.91988	79.246	78.987	79.907	-0.2465					34	21	3	0	0	0	0.03519	1	9586	9586		40.058	11.481	1	301810			56282	9596	39289	39355	61764	61764					0.06383175545511222
NTLSKLFFPP	10	Unmodified	_NTLSKLFFPP_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	582.326599	1162.63865	-0.52534	-0.00030592	0.17977	0.00010469	-0.34556	-0.00020123	582.3265515223405	79.456	0.62129	79.237	78.914	79.535	-0.21922	0.021871	0.00044899	NaN	40.058	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346090			56283	9596	39289	39355							0.06383175545511222
NTLSKLFFPP	10	Unmodified	_NTLSKLFFPP_					0	0	0		ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	ENSG00000186952|ENST00000455884|TMEM232	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	582.326599	1162.63865	-0.33001	-0.00019217	0.041955	2.4431E-05	-0.28806	-0.00016774	582.3264873716192	79.313	0.8802	79.162	78.943	79.823	-0.15051	-0.053015	0.00028848	NaN	40.058	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286730			56284	9596	39289	39355							0.06383175545511222
NTLTRKLAD	9	Unmodified	_NTLTRKLAD_					0	0	0			REV__ENSG00000150261|ENST00000279783|OR8K1	REV__ENSG00000150261|ENST00000279783|OR8K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2794189453125	2	516.29583	1030.57711	-0.093305	-4.8173E-05	1.3296	0.00068647	1.2363	0.0006383	516.2960464109733	55.407	0.39462	55.176	54.963	55.357	-0.23087					15	11	2	0	0	0	0.016006	1	5932	5932		122.18	0	1	170120	+		56285	24712	39290	39356	61765	61765					0.06304243846238933
NTLVKTAS	8	Unmodified	_NTLVKTAS_					0	0	0		nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	nc|ENSG00000133422|Q9Y6X9-2|MORC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.2391357421875	2	417.239993	832.465432	0.69179	0.00028864	-2.5084	-0.0010466	-1.8166	-0.00075797	417.23885776731845	87.824	1.3614	87.789	87.405	88.766	-0.035355					56	32	2	0	0	0	1.0284	1	11046	11046		32.812	2.3088	1	3093200			56286	4706	39291	39357	61766	61766					0.042498094890902394
NTLYRLKAH	9	Unmodified	_NTLYRLKAH_					0	0	0		ENSG00000188786|ENST00000373036|MTF1	ENSG00000188786|ENST00000373036|MTF1	ENSG00000188786|ENST00000373036|MTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.29248046875	2	558.31964	1114.62473	-0.27454	-0.00015328	0.43893	0.00024507	0.1644	9.1787E-05	558.3201940751396	76.371	0.68099	76.202	76.012	76.693	-0.16854					19	15	2	0	0	0	0.024367	1	9046	9046		36.447	0	1	142390			56287	9752	39292	39358	61767	61767					0.07199942837087292
NTMLRREI	8	Unmodified	_NTMLRREI_					0	0	0		ENST00000478275.1_1_1:212860135-212870482:-|nuORF;ENSG00000123685|ENST00000243440|BATF3	ENST00000478275.1_1_1:212860135-212870482:-|nuORF	ENST00000478275.1_1_1:212860135-212870482:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7850952148438	2	516.784576	1031.5546	-0.2569	-0.00013276	-0.6367	-0.00032903	-0.8936	-0.0004618	516.7841270902311	94.105	1.5772	94.105	93.645	95.222	0					106	37	4	0	0	0	0.29644	1	11955	11955		113.41	1.3044	1	6750500			56288	3995	39293	39359	61768	61768					0.040083211769797344
NTMLRREI	8	Unmodified	_NTMLRREI_					0	0	0		ENST00000478275.1_1_1:212860135-212870482:-|nuORF;ENSG00000123685|ENST00000243440|BATF3	ENST00000478275.1_1_1:212860135-212870482:-|nuORF	ENST00000478275.1_1_1:212860135-212870482:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.7844848632812	2	516.784576	1031.5546	-1.1224	-0.00058004	0.12052	6.2285E-05	-1.0019	-0.00051776	516.7845845315921	94.106	1.6266	94.112	93.73	95.357	0.0059814					96	38	5	0	0	0	0.50717	1	11911	11911		84.916	2.6105	1	6812900			56289	3995	39293	39359	61769	61769					0.040083211769797344
NTMMMMMRQ	9	Unmodified	_NTMMMMMRQ_					0	0	0			REV__ENST00000484235.1_1_22:42478025-42478073:+|nuORF	REV__ENST00000484235.1_1_22:42478025-42478073:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.8080444335938	2	587.238918	1172.46328	-0.69004	-0.00040522	0.12299	7.2226E-05	-0.56705	-0.00033299	587.2389543416475	75.718	0.62645	75.445	75.186	75.812	-0.27266					28	15	3	0	0	0	0.024477	1	8996	8996		35.618	4.0885	1	211230	+		56290	33535	39294	39360	61770	61770					-0.11605093170169312
NTNKTLNPQ	9	Unmodified	_NTNKTLNPQ_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2-4|SIMC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.29443359375	2	515.269813	1028.52507	0.018362	9.4612E-06	2.7761	0.0014305	2.7945	0.0014399	515.2713687519699	54.063	0.42862	53.866	53.74	54.168	-0.19739					18	12	2	0	0	0	0.024527	1	5688	5688		8.2351	0.003791	1	294230	+		56291	26433	39295	39361	61771	61771					0.011950804324669662
NTPERREK	8	Unmodified	_NTPERREK_					0	0	0		DNAJC2|p.W577R|1|0.18|ENSG00000105821|chr7:103313009-103313009|A/G|missense_variant	DNAJC2|p.W577R|1|0.18|ENSG00000105821|chr7:103313009-103313009|A/G|missense_variant	DNAJC2|p.W577R|1|0.18|ENSG00000105821|chr7:103313009-103313009|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2942504882812	2	515.275429	1028.53631	-0.7107	-0.0003662	3.595	0.0018524	2.8844	0.0014862	515.2772672669668	53.582	0.48975	53.445	53.171	53.661	-0.13617					24	13	2	0	0	0	0.027866	1	5657	5657		23.042	0	1	595570			56292	657	39296	39362	61772	61772					0.023179025266244935
NTPFLYDL	8	Unmodified	_NTPFLYDL_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7922668457031	2	491.74765	981.480748	-0.22665	-0.00011146	3.7523	0.0018452	3.5256	0.0017337	491.7494197770757	80.034	0.71326	80.034	79.744	80.457	0					34	16	3	0	0	0	0.027866	1	9984	9984		29.15	0	1	482800			56293	6950	39297	39363	61773	61773					-0.010733237137174001
NTPKKLGNSL	10	Unmodified	_NTPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3114013671875	2	536.31148	1070.60841	0.57142	0.00030646	-0.43194	-0.00023165	0.13948	7.4807E-05	536.311298216663	97.061	1.2149	96.925	96.524	97.738	-0.13671					64	26	4	0	0	0	1.0814	1	12004	12004		35.178	2.3658	1	625010			56294	5130	39298	39364	61774	61774					0.07592816880332975
NTPLLHRA	8	Unmodified	_NTPLLHRA_					0	0	0			REV__ENST00000493445.5_3_2:110332329-110371422:-|nuORF	REV__ENST00000493445.5_3_2:110332329-110371422:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2645568847656	2	461.266876	920.519199	-0.28514	-0.00013152	-3.7877	-0.0017472	-4.0729	-0.0018787	461.26486069917354	92.236	2.0337	92.228	91.708	93.742	-0.0082932					92	48	3	0	0	0	1.0574	1	11671	11671		26.796	0	1	1651600	+		56295	33763	39299	39365	61775	61775					0.0557602671146924
NTPQKLFEP	9	Unmodified	_NTPQKLFEP_					0	0	0			REV__nc|ENSG00000067141|Q92859-3|NEO1	REV__nc|ENSG00000067141|Q92859-3|NEO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.805419921875	2	537.284931	1072.55531	-0.76342	-0.00041018	4.1658	0.0022382	3.4024	0.001828	537.286962672178	37.041	0.4268	37.074	36.838	37.264	0.032269					25	10	3	0	0	0	0.024427	1	2953	2953		34.173	0	1	302070	+		56296	20352	39300	39366	61776	61776					0.021934390976639406
NTPQNEEPA	9	Unmodified	_NTPQNEEPA_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7662658691406	2	500.222528	998.430503	-0.31065	-0.0001554	1.2274	0.00061396	0.91672	0.00045857	500.22301384848987	36.663	0.45662	36.701	36.545	37.002	0.038044					16	11	2	0	0	0	0.023837	1	2875	2875		64.207	25.401	1	93642	+		56297	25165	39301	39367	61777	61777					-0.06877478109515778
NTPRLRVH	8	Unmodified	_NTPRLRVH_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2355651855469	2	496.79105	991.567546	-0.44647	-0.0002218	-1.5337	-0.00076193	-1.9802	-0.00098374	496.7903765035419	31.072	0.20333	30.886	30.702	30.905	-0.18503					5	4	2	0	0	0	0.027866	1	2007	2007		35.618	0	1	40728			56298	9498	39302	39368	61778	61778					0.0714252035137406
NTQDEVAGAPA	11	Unmodified	_NTQDEVAGAPA_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.78466796875	2	536.74891	1071.48327	-0.33149	-0.00017793	-1.416	-0.00076004	-1.7475	-0.00093796	536.7479228460732	55.991	0.59318	55.775	55.525	56.118	-0.21607					36	15	3	0	0	0	0.024787	1	6048	6048		33.922	0	1	936350			56299	4074	39303	39369	61779	61779					-0.04961520046708756
NTQKRILNY	9	Unmodified	_NTQKRILNY_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.80078125	2	575.32238	1148.63021	-1.1501	-0.00066168	-0.086885	-4.9987E-05	-1.237	-0.00071167	575.3222037472951	43.943	0.41123	43.724	43.525	43.936	-0.21939					24	10	3	0	0	0	0.024511	1	4066	4066		25.574	5.5773	1	562540	+		56300	19928	39304	39370	61780	61780					0.061836216289066215
NTRCYFLLY	9	Unmodified	_NTRCYFLLY_					0	0	0		ENST00000155674.9_1_22:17618446-17618698:-|nuORF	ENST00000155674.9_1_22:17618446-17618698:-|nuORF	ENST00000155674.9_1_22:17618446-17618698:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.7752075195312	2	596.794609	1191.57467	-0.032661	-1.9492E-05	0.71884	0.000429	0.68617	0.0004095	596.7964032456853	68.723	0.40373	68.492	68.156	68.559	-0.23048					15	9	3	0	0	0	0.024397	1	7930	7930		31.53	10.693	1	124720			56301	11110	39305	39371	61781	61781					-0.013459278830623589
NTRCYFLLY	9	Unmodified	_NTRCYFLLY_					0	0	0		ENST00000155674.9_1_22:17618446-17618698:-|nuORF	ENST00000155674.9_1_22:17618446-17618698:-|nuORF	ENST00000155674.9_1_22:17618446-17618698:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	596.794609	1191.57467	-0.52137	-0.00031115	-2.9288	-0.0017479	-3.4502	-0.0020591	596.791210268032	68.807	0.38419	68.514	68.289	68.673	-0.29267	0.0111	-0.0021622	NaN	31.53	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107800			56302	11110	39305	39371							-0.013459278830623589
NTRGRSQH	8	Unmodified	_NTRGRSQH_					0	0	0		ENST00000247295.4_1_9:134133757-134133931:-|nuORF	ENST00000247295.4_1_9:134133757-134133931:-|nuORF	ENST00000247295.4_1_9:134133757-134133931:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.277099609375	2	478.244464	954.474374	0.13868	6.6322E-05	-4.3859	-0.0020975	-4.2472	-0.0020312	478.24213642053616	75.262	0.39309	75.018	74.798	75.191	-0.24455					14	9	2	0	0	0	0.027866	1	9191	9191		45.952	1.8352	1	165100			56303	11325	39306	39372	61782	61782					-0.004684041018663265
NTRIESKNK	9	Unmodified	_NTRIESKNK_					0	0	0			REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3246459960938	2	545.304187	1088.59382	-0.62222	-0.0003393	-3.2115	-0.0017512	-3.8337	-0.0020905	545.3023992652072	68.624	0.82288	68.643	68.314	69.137	0.018913					38	21	3	0	0	0	0.024397	1	8119	8119		56.721	10.749	1	1041200	+		56304	25188	39307	39373	61783	61783					0.05306744732183688
NTRLFRLR	8	Unmodified	_NTRLFRLR_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3;REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3269653320312	2	538.327799	1074.64105	-0.6263	-0.00033715	-0.39574	-0.00021304	-1.022	-0.00055019	538.3275828035606	100.97	1.1924	100.8	100.66	101.85	-0.17178					47	28	2	0	0	0	1.0574	1	12566	12566		27.882	1.1893	1	144770	+		56305	20182;23137	39308	39374	61784	61784					0.1067106879381754
NTRLKPPHK	9	Unmodified	_NTRLKPPHK_					0	0	0		nc|ENSG00000139278|P48060-2|GLIPR1;ENSG00000139278|ENST00000266659|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	nc|ENSG00000139278|P48060-2|GLIPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.781494140625	2	545.827632	1089.64071	-0.31886	-0.00017404	2.8699	0.0015665	2.5511	0.0013925	545.828672359747	75.671	0.73456	75.496	75.312	76.047	-0.17548					26	18	3	0	0	0	0.024539	1	8924	8924		27.882	1.1893	1	205220			56306	5319	39309	39375	61785	61785					0.09947649073978937
NTRLTDDV	8	Unmodified	_NTRLTDDV_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	ENSG00000085563|ENST00000622132|ABCB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2371520996094	2	467.235439	932.456324	-0.78785	-0.00036811	-4.3459	-0.0020306	-5.1338	-0.0023987	467.2329247569816	28.103	0.76372	28.103	27.726	28.49	0					35	18	2	0	0	0	0.027866	1	1644	1644		30.504	8.5438	1	102190			56307	1795	39310	39376	61786	61786					-0.012605838672357095
NTRPPHVQL	9	Unmodified	_NTRPPHVQL_					0	0	0		ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:980866-997838:+|nuORF;nc|ENSG00000127415|P35475-2|IDUA	ENSG00000127415|ENST00000514224|IDUA	ENSG00000127415|ENST00000514224|IDUA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.8168334960938	2	531.296165	1060.57778	0.1774	9.4254E-05	2.6154	0.0013895	2.7928	0.0014838	531.2976999691662	86.193	0.52243	86.05	85.841	86.364	-0.14217					16	11	2	0	0	0	0.024427	1	10476	10476		42.396	0	1	52319			56308	4242	39311	39377	61787	61787					0.04991083285949571
NTRQQLRR	8	Unmodified	_NTRQQLRR_					0	0	0			REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF	REV__ENST00000485073.5_1_1:6713895-6761860:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3111572265625	2	536.310138	1070.60572	-0.77225	-0.00041417	3.3711	0.0018079	2.5988	0.0013938	536.3119727707362	97.164	1.1655	97.003	96.595	97.76	-0.16105					58	25	4	0	0	0	0.94504	1	12001	12001		45.972	1.5951	1	651160	+		56309	19869	39312	39378	61788	61788					0.07324406266047845
NTRRMKAK	8	Unmodified	_NTRRMKAK_					0	0	0		ENST00000260777.14_3_10:118645880-118645988:-|nuORF	ENST00000260777.14_3_10:118645880-118645988:-|nuORF	ENST00000260777.14_3_10:118645880-118645988:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7455139160156	2	502.792735	1003.57092	-0.34318	-0.00017255	-1.4367	-0.00072238	-1.7799	-0.00089493	502.7920332488842	34.613	0.36411	34.406	34.242	34.607	-0.20696					11	8	2	0	0	0	0.027866	1	2563	2563		21.96	0	1	46625			56310	11454	39313	39379	61789	61789					0.06927447133728037
NTRRSKAP	8	Unmodified	_NTRRSKAP_					0	0	0			REV__ENST00000382286.2_1_9:744684-744951:+|nuORF	REV__ENST00000382286.2_1_9:744684-744951:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2722473144531	2	465.267407	928.520262	-0.14874	-6.9202E-05	0.92993	0.00043267	0.7812	0.00036346	465.2678040956849	19.827	0.37542	19.708	19.591	19.967	-0.11872					19	7	3	0	0	0	0.027866	1	439	439		55.504	9.5523	1	200540	+		56311	31541	39314	39380	61790	61790					0.053142410803729945
NTRTNVRF	8	Unmodified	_NTRTNVRF_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.27252197265625	2	504.27269	1006.53083	0.8874	0.00044749	-1.1055	-0.00055747	-0.2181	-0.00010998	504.27203346022634	20.304	0.77813	20.108	19.755	20.533	-0.19577					39	15	4	0	0	0	0.95679	1	517	517		44.117	0	1	639180			56312	3706	39315	39381	61791	61791					0.027822237348118506
NTRVYQPPDSP	11	Unmodified	_NTRVYQPPDSP_					0	0	0		nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.23858642578125	3	425.210565	1272.60986	0.091734	3.9006E-05	-1.2596	-0.00053561	-1.1679	-0.0004966	425.2100277805421	29.363	0.63004	29.214	28.912	29.542	-0.14952					36	14	4	0	0	0	0.024757	1	1812	1812		25.892	13.459	1	286890			56313	18155	39316	39382	61792	61792					-0.015535938215634815
NTRWAGRHHS	10	Unmodified	_NTRWAGRHHS_					0	0	0		ENST00000393892.7_1_17:40126102-40126558:+|nuORF	ENST00000393892.7_1_17:40126102-40126558:+|nuORF	ENST00000393892.7_1_17:40126102-40126558:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.8875732421875	3	407.870988	1220.59114	0.10438	4.2573E-05	0.44102	0.00017988	0.5454	0.00022245	407.8704747492859	33.506	0.34653	33.306	33.171	33.517	-0.20019					13	8	2	0	0	0	0.03519	1	2422	2422		21.78	2.5177	1	66710			56314	13475	39317	39383	61793	61793					-0.010336658821188394
NTRYSSKRRVT	11	Unmodified	_NTRYSSKRRVT_					0	0	0		ENST00000539420.1_1_11:113286028-113288807:-|nuORF;ENST00000540600.5_1_11:113285027-113346393:-|nuORF;nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2	ENST00000539420.1_1_11:113286028-113288807:-|nuORF	ENST00000539420.1_1_11:113286028-113288807:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.26934814453125	3	456.588258	1366.74294	-0.51252	-0.00023401	3.7351	0.0017054	3.2226	0.0014714	456.5897989558266	47.689	0.83435	47.749	47.423	48.258	0.059097					47	24	3	0	0	0	0.024789	1	4724	4724		11.455	0	1	1005000			56315	6080	39318	39384	61794	61794					0.0742427035493165
NTSFMLQLS	9	Unmodified	_NTSFMLQLS_					0	0	0		ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	ENSG00000175087|ENST00000374269|PDIK1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2689208984375	2	520.757692	1039.50083	-0.15502	-8.0727E-05	-1.1866	-0.00061793	-1.3416	-0.00069866	521.2587394478314	75.2	0.3536	75.21	74.973	75.326	0.010376					10	8	2	0	0	0	0.023655	1	9123	9123		69.628	7.5202	1	151680			56316	8526	39319	39385	61795	61795					-0.017338960454026164
NTSFRTTF	8	Unmodified	_NTSFRTTF_					0	0	0			REV__ENST00000219334.9_1_16:68394476-68395076:-|nuORF	REV__ENST00000219334.9_1_16:68394476-68395076:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.21136474609375	2	487.240524	972.466495	1.122	0.00054671	-1.4675	-0.00071503	-0.34547	-0.00016833	487.2396532395259	54.738	0.47664	54.532	54.318	54.794	-0.20613					22	12	2	0	0	0	0.027866	1	5850	5850		47.916	27.434	1	565990	+		56317	29337	39320	39386	61796	61796					-0.020839761419892966
NTSHIHMKV	9	Unmodified	_NTSHIHMKV_					0	0	0			REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7899780273438	2	533.776751	1065.53895	1.6388	0.00087475	0.37296	0.00019908	2.0118	0.0010738	533.777236730784	24.109	0.39261	23.928	23.848	24.241	-0.18089					11	8	2	0	0	0	0.024436	1	1002	1002		10.866	0	1	211550	+		56318	34517	39321	39387	61797	61797					0.008800346599173281
NTSIQLLQGE	10	Unmodified	_NTSIQLLQGE_					0	0	0		nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX	nc|ENSG00000115486|P38435-2|GGCX	nc|ENSG00000115486|P38435-2|GGCX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.31787109375	2	551.790578	1101.5666	-0.014552	-8.0297E-06	3.3886	0.0018698	3.3741	0.0018618	551.7922356476405	64.298	0.47022	64.106	63.881	64.351	-0.19243					13	11	2	0	0	0	0.03519	1	7314	7314		66.962	5.2706	1	109230			56319	3454	39322	39388	61798	61798					0.019882164011505665
NTSLEYMDGY	10	Unmodified	_NTSLEYMDGY_					0	0	0			REV__ENSG00000115841|ENST00000354545|RMDN2;REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	596.76708984375	2	596.744979	1191.4754	-0.68142	-0.00040663	-1.9983	-0.0011925	-2.6798	-0.0015991	596.7428700833292	58.095	0.21247	58.186	58.084	58.297	0.091217					9	5	3	0	0	0	0.03519	1	6495	6495		19.104	0	1	112690	+		56320	22236;36587	39323	39389	61799	61799					-0.11267415358474864
NTSRFRVVK	9	Unmodified	_NTSRFRVVK_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.76611328125	2	553.825089	1105.63563	-0.91593	-0.00050727	2.3655	0.00131	1.4495	0.00080278	553.8264382103832	61.036	0.76188	60.782	60.584	61.346	-0.25373					31	18	3	0	0	0	0.024539	1	6867	6867		20.947	7.4929	1	460630			56321	2431	39324	39390	61800	61800					0.08703345211370106
NTSRFRVVK	9	Unmodified	_NTSRFRVVK_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.825089	1105.63563	-0.78048	-0.00043225	2.2508	0.0012466	1.4703	0.00081431	553.826220891033	60.691	0.97702	60.691	60.437	61.414	0	-0.028504	-0.00018351	NaN	20.947	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1572100			56322	2431	39324	39390							0.08703345211370106
NTSRFRVVK	9	Unmodified	_NTSRFRVVK_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.825089	1105.63563	-0.85226	-0.000472	2.4286	0.001345	1.5764	0.00087303	553.8263102486818	60.967	0.81781	60.753	60.493	61.311	-0.21339	0.033419	1.3431E-05	NaN	20.947	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1498600			56323	2431	39324	39390							0.08703345211370106
NTSRFRVVK	9	Unmodified	_NTSRFRVVK_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-4|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.825089	1105.63563	-1.3609	-0.00075368	2.8684	0.0015886	1.5076	0.00083493	553.8265575842255	60.623	0.89329	60.702	60.429	61.322	0.078888	-0.017641	0.0005006	NaN	20.947	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1546700			56324	2431	39324	39390							0.08703345211370106
NTTCKWVV	8	Carbamidomethyl (C)	_NTTC(Carbamidomethyl (C))KWVV_	NTTC(1)KWVV		NTTC(91)KWVV		0	1	0			REV__ENST00000433529.6_1_2:70441543-70441591:-|nuORF	REV__ENST00000433529.6_1_2:70441543-70441591:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.78173828125	2	504.252577	1006.4906	-0.39574	-0.00019955	-2.0115	-0.0010143	-2.4072	-0.0012138	504.2510088603054	47.447	0.66261	47.447	47.181	47.843	0					27	19	2	0	0	0	0.027866	1	4754	4754		90.777	32.965	1	180690	+		56325	32408	39325	39391	61801	61801	428				-0.012384589799808055
NTTDPLSFI	9	Unmodified	_NTTDPLSFI_					0	0	0			REV__ENST00000225726.9_1_17:61823541-61823598:-|nuORF	REV__ENST00000225726.9_1_17:61823541-61823598:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2974548339844	2	504.25584	1006.49713	0.39343	0.00019839	-2.8376	-0.0014309	-2.4442	-0.0012325	504.2541317053796	21.569	0.23994	21.392	21.303	21.543	-0.17721					6	4	2	0	0	0	0.024323	1	683	683		35.618	0	1	11289	+		56326	29374	39326	39392	61802	61802					-0.005862425476038879
NTTKLHIVL	9	Unmodified	_NTTKLHIVL_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8195190429688	2	519.818941	1037.62333	0.39079	0.00020314	-0.95648	-0.0004972	-0.56569	-0.00029406	519.8185167136494	71.654	3.022	71.366	70.459	73.481	-0.28858					180	76	4	0	0	0	0.94779	1	8696	8696		29.17	0	1	29892000			56327	8441	39327	39393	61803	61803					0.10602308748320866
NTTKVKEF	8	Unmodified	_NTTKVKEF_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000105220|ENST00000356487|GPI;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2879943847656	2	483.766374	965.518196	-1.054	-0.0005099	0.88095	0.00042617	-0.17306	-8.3723E-05	483.7663153713551	22.752	0.55815	22.826	22.51	23.068	0.073954					23	11	3	0	0	0	0.027866	1	805	805		34.173	0	1	131810		+	56328	17687;2646	39328	39394	61804	61804					0.03405767551907957
NTTSDVAVV	9	Unmodified	_NTTSDVAVV_					0	0	0			REV__ENSG00000145191|ENST00000648915|EIF2B5	REV__ENSG00000145191|ENST00000648915|EIF2B5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2665710449219	2	453.232364	904.450176	-0.20637	-9.3535E-05	2.3942	0.0010851	2.1878	0.00099159	453.2336055521545	25.451	0.4185	25.281	25.081	25.499	-0.17078					19	9	3	0	0	0	0.024405	1	1181	1181		53.351	25.469	1	47590	+		56329	24385	39329	39395	61805	61805					-0.005871020987569864
NTTSDVAVV	9	Unmodified	_NTTSDVAVV_					0	0	0			REV__ENSG00000145191|ENST00000648915|EIF2B5	REV__ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.232364	904.450176	0.39388	0.00017852	1.2684	0.00057489	1.6623	0.00075341	453.2328751795508	25.217	0.69952	25.297	25.006	25.706	0.080088	-0.020037	-0.00075434	NaN	35.618	50	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	546350	+		56330	24385	39329	39395							-0.005871020987569864
NTTVLVVPF	9	Unmodified	_NTTVLVVPF_					0	0	0		ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000503862.5_3_4:108746377-108829880:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.3231201171875	2	495.286943	988.559333	1.2086	0.00059858	-4.1203	-0.0020407	-2.9117	-0.0014421	495.28461418762765	64.132	0.6515	64.177	63.759	64.411	0.045502					35	17	3	0	0	0	0.024386	1	7451	7451		52.299	35.826	1	535680			56331	15702	39330	39396	61806	61806					0.06459528591381059
NTTVSIDVT	9	Unmodified	_NTTVSIDVT_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.2648620605469	2	475.245472	948.476391	-0.17577	-8.3533E-05	-2.3528	-0.0011181	-2.5285	-0.0012017	475.244444325076	52.277	0.54255	52.093	51.852	52.395	-0.18404					21	13	2	0	0	0	0.024313	1	5383	5383		42.864	0	1	238600	+		56332	28655	39331	39397	61807	61807					9.1670727329074E-05
NTTVSIDVT	9	Unmodified	_NTTVSIDVT_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.245472	948.476391	0.82561	0.00039237	-3.266	-0.0015522	-2.4404	-0.0011598	475.2449618786218	52.03	0.58081	52.03	51.77	52.351	0	-0.041726	-0.0015067	NaN	47.96	51	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158800	+		56333	28655	39331	39397							9.1670727329074E-05
NTTVSIDVT	9	Unmodified	_NTTVSIDVT_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.245472	948.476391	0.37259	0.00017707	-1.7799	-0.00084587	-1.4073	-0.0006688	475.24521686313255	52.174	0.58093	52.027	51.745	52.326	-0.14735	-0.045457	-9.413E-05	NaN	47.96	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1260100	+		56334	28655	39331	39397							9.1670727329074E-05
NTTVSIDVT	9	Unmodified	_NTTVSIDVT_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.245472	948.476391	-0.56576	-0.00026887	-0.16203	-7.7004E-05	-0.72779	-0.00034588	475.24562124963893	51.884	0.52637	51.976	51.754	52.28	0.091938	-0.095807	0.0014436	NaN	47.96	42	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1169100	+		56335	28655	39331	39397							9.1670727329074E-05
NTTVSIDVT	9	Unmodified	_NTTVSIDVT_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.245472	948.476391	-0.37325	-0.00017738	-1.8013	-0.00085607	-2.1746	-0.0010335	475.2444535866664	52.255	0.68703	52.136	51.833	52.52	-0.11875	0.064171	-0.00011453	NaN	47.96	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181880	+		56336	28655	39331	39397							9.1670727329074E-05
NTVAEIILN	9	Unmodified	_NTVAEIILN_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3059997558594	2	493.779482	985.544411	0.55655	0.00027481	1.8765	0.00092656	2.433	0.0012014	493.77884346910565	85.106	0.20052	84.969	84.828	85.029	-0.13753					6	4	2	0	0	0	0.024261	1	10297	10297		64.207	16.292	1	44327	+		56337	20583	39332	39398	61808	61808					0.05106036723395846
NTVALLQLL	9	Unmodified	_NTVALLQLL_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14;LRRC14|p.R208C|1|0.31|ENSG00000160959|chr8:144520530-144520530|C/T|missense_variant	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7691345214844	2	492.808042	983.601532	-0.22457	-0.00011067	-0.72739	-0.00035846	-0.95196	-0.00046913	492.80719864084557	60.232	0.34877	60.056	59.849	60.198	-0.1761					13	8	2	0	0	0	0.024539	1	6703	6703		20.947	6.0821	1	157070			56338	6852	39333	39399	61809	61809					0.10907503999760593
NTVKELQIQ	9	Unmodified	_NTVKELQIQ_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E1468Q|1|0.08|ENSG00000144674|chr3:37326288-37326288|G/C|missense_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.8031005859375	2	536.803488	1071.59242	-1.5991	-0.00085841	1.1149	0.00059851	-0.48416	-0.0002599	536.803996932299	51.162	0.57149	51.249	51.039	51.61	0.087006					43	15	4	0	0	0	0.014918	1	5353	5353		162.25	8.1341	1	2862100			56339	5759	39334	39400	61810	61810					0.059491106434506946
NTVKGFPLGL	10	Unmodified	_NTVKGFPLGL_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20;REV__nc|ENSG00000119314|O95758-1|PTBP3;REV__ENST00000586944.5_1_19:797434-805231:+|nuORF	REV__ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.761474609375	2	523.305667	1044.59678	0.71885	0.00037618	0.63182	0.00033064	1.3507	0.00070681	523.8083616149403	59.741	0.3036	59.565	59.401	59.704	-0.1761					7	5	2	0	0	0	0.03519	1	6594	6594		37.812	13.609	1	76032	+		56340	28550;22448;19926	39335	39401	61811	61811					0.0762661985700106
NTVKKCTK	8	Unmodified	_NTVKKCTK_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.2649841308594	2	461.262945	920.511337	0.17236	7.9505E-05	4.4132	0.0020357	4.5856	0.0021152	461.26472942811046	92.343	1.9542	92.201	91.704	93.658	-0.14131					87	45	3	0	0	0	1.0106	1	11350	11350		35.618	1.4457	1	1197500			56341	10073	39336	39402	61812	61812					0.047901313996931094
NTVKKCTK	8	Unmodified	_NTVKKCTK_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	461.262945	920.511337	-0.49934	-0.00023033	5.0543	0.0023314	4.555	0.002101	461.26500235510275	92.169	2.2071	92.169	91.641	93.848	0	-0.021937	0.00019284	NaN	35.618	96	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1540400			56342	10073	39336	39402							0.047901313996931094
NTVKKCTK	8	Unmodified	_NTVKKCTK_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	461.262945	920.511337	0.74627	0.00034423	3.8203	0.0017622	4.5666	0.0021064	461.26440897658716	92.159	2.2755	92.169	91.658	93.934	0.009407	-0.021996	-0.00094556	NaN	35.618	96	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1504700			56343	10073	39336	39402							0.047901313996931094
NTVLQELYV	9	Unmodified	_NTVLQELYV_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8018798828125	2	539.792589	1077.57063	-0.53167	-0.00028699	0.81969	0.00044246	0.28802	0.00015547	539.7929651581517	93.218	1.359	93.218	92.924	94.283	0					54	32	3	0	0	0	0.021513	1	11956	11956		82.241	5.4664	1	301450			56344	9743	39337	39403	61813	61813					0.03494305894855643
NTVLRFLDL	9	Unmodified	_NTVLRFLDL_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.81640625	2	545.816399	1089.61824	0.054444	2.9716E-05	-1.1009	-0.0006009	-1.0465	-0.00057118	545.8158503193108	67.186	1.6642	66.938	66.65	68.314	-0.24839					130	41	5	0	0	0	0.40693	1	7776	7776		65.465	5.5346	1	43259000			56345	7965	39338	39404	61814	61814					0.07702004885709357
NTVLRPLL	8	Unmodified	_NTVLRPLL_					0	0	0			REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF	REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7691955566406	2	463.295102	924.575651	0.042149	1.9527E-05	0.027101	1.2556E-05	0.06925	3.2083E-05	463.2950246684539	63.377	0.67179	63.125	62.809	63.48	-0.25141					32	17	2	0	0	0	0.027866	1	7422	7422		26.796	0	1	1072300	+		56346	30554	39339	39405	61815	61815					0.11034654548143408
NTVLVWVP	8	Unmodified	_NTVLVWVP_					0	0	0		nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-7|ABCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.29461669921875	2	464.268553	926.522553	-0.67977	-0.0003156	4.1032	0.001905	3.4234	0.0015894	464.270560141485	48.459	0.39599	48.362	48.114	48.51	-0.097553					14	10	2	0	0	0	0.027866	1	4782	4782		47.916	26.213	1	195930			56347	2482	39340	39406	61816	61816					0.05635276765474373
NTVQLRKW	8	Unmodified	_NTVQLRKW_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.314208984375	2	522.801083	1043.58761	-0.19072	-9.9711E-05	1.0534	0.00055073	0.8627	0.00045102	522.8007230981581	32.188	0.21768	31.952	31.824	32.042	-0.23667					7	4	2	0	0	0	0.027866	1	2207	2207		17.365	0	1	24722	+		56348	20113	39341	39407	61817	61817					0.0675627129132863
NTVRHNLCF	9	Unmodified	_NTVRHNLCF_					0	0	0		ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.318359375	2	552.274375	1102.5342	-0.61709	-0.00034081	-1.0068	-0.00055604	-1.6239	-0.00089684	552.2749121105397	64.748	0.74036	64.493	64.038	64.778	-0.25563					26	18	2	0	0	0	0.024523	1	7301	7301		37.159	18.835	1	152690			56349	8630	39342	39408	61818	61818					-0.012968494828328403
NTVRHNLCF	9	Unmodified	_NTVRHNLCF_					0	0	0		ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.274375	1102.5342	-0.50877	-0.00028098	-4.4449	-0.0024548	-4.9537	-0.0027358	552.2718750210216	64.706	0.35206	64.472	64.295	64.647	-0.2345	-0.039932	-0.00030207	NaN	29.15	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231110			56350	8630	39342	39408							-0.012968494828328403
NTVRHNLCF	9	Unmodified	_NTVRHNLCF_					0	0	0		ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.274375	1102.5342	-0.59307	-0.00032754	-3.7702	-0.0020822	-4.3633	-0.0024097	552.2721867305652	64.773	0.84461	64.571	64.301	65.146	-0.20254	0.059121	0.00044317	NaN	29.15	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163190			56351	8630	39342	39408							-0.012968494828328403
NTVRQIED	8	Unmodified	_NTVRQIED_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.77960205078125	2	487.748713	973.482873	0.38747	0.00018899	3.9429	0.0019231	4.3303	0.0021121	487.7506615220257	75.701	1.0611	75.526	74.986	76.047	-0.17548					59	26	4	0	0	0	0.027866	1	8920	8920		56.721	0	1	2737800	+		56352	20302	39343	39409	61819	61819					-0.004928949759005263
NTVSIINVK	9	Unmodified	_NTVSIINVK_					0	0	0			REV__ENST00000469331.1_1_3:150264589-150280476:+|nuORF	REV__ENST00000469331.1_1_3:150264589-150280476:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.30548095703125	2	494.295299	986.576045	0.13421	6.6338E-05	3.9457	0.0019503	4.0799	0.0020167	494.29703386246916	84.855	0.74529	84.651	84.253	84.998	-0.20329					41	17	3	0	0	0	0.0242	1	10297	10297		79.713	2.9384	1	671420	+		56353	24372	39344	39410	61820	61820					0.08222029477349224
NTVSIINVK	9	Unmodified	_NTVSIINVK_					0	0	0			REV__ENST00000469331.1_1_3:150264589-150280476:+|nuORF	REV__ENST00000469331.1_1_3:150264589-150280476:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3056640625	2	494.295299	986.576045	0.83091	0.00041071	3.3652	0.0016634	4.1962	0.0020741	494.29678875470836	84.796	0.70113	84.637	84.279	84.98	-0.15868					44	16	4	0	0	0	0.023655	1	10305	10305		79.713	15.505	1	802680	+		56354	24372	39344	39410	61821	61821					0.08222029477349224
NTVTEFTIT	9	Unmodified	_NTVTEFTIT_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7713623046875	2	513.261122	1024.50769	0.033096	1.6987E-05	0.94307	0.00048404	0.97616	0.00050103	513.2598858992283	19.857	0.34191	19.696	19.529	19.871	-0.16079					14	6	3	0	0	0	0.024381	1	467	467		45.952	13.997	1	24761			56355	3525	39345	39411	61822	61822					-0.003582598931643588
NTVTRMAKS	9	Unmodified	_NTVTRMAKS_					0	0	0			REV__ENST00000512235.1_1_4:122261523-122301889:-|nuORF	REV__ENST00000512235.1_1_4:122261523-122301889:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2973937988281	2	504.268758	1006.52296	-0.042782	-2.1574E-05	-3.4557	-0.0017426	-3.4985	-0.0017642	504.26689565999635	21.493	0.63177	21.302	21.078	21.71	-0.19072					24	12	3	0	0	0	0.024257	1	693	693		49.536	25.333	1	109870	+		56356	27889	39346	39412	61823	61823					0.019963284230243517
NTVTSNTVVF	10	Unmodified	_NTVTSNTVVF_					0	0	0			REV__ENST00000501122.2_1_11:65211032-65211398:+|nuORF	REV__ENST00000501122.2_1_11:65211032-65211398:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.290283203125	2	541.279846	1080.54514	-0.50782	-0.00027487	-4.1251	-0.0022328	-4.6329	-0.0025077	541.2773564589263	53.571	0.32183	53.571	53.404	53.726	0					13	8	3	0	0	0	0.03519	1	5809	5809		31.53	2.3803	1	294000	+		56357	33911	39347	39413	61824	61824					0.008088313724329055
NTVVQKPRQIL	11	Unmodified	_NTVVQKPRQIL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.5975341796875	3	432.597983	1294.77212	0.16554	7.1611E-05	-0.86599	-0.00037463	-0.70045	-0.00030302	432.5974660860079	105.35	0.96638	105.35	104.84	105.81	0.00097656					89	32	4	0	0	0	1.0557	1	13481	13481		26.75	6.4347	1	1518400			56358	163	39348	39414	61825	61825					0.13652414651232903
NTWDQKSL	8	Unmodified	_NTWDQKSL_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.7765808105469	2	496.245806	990.47706	-0.6671	-0.00033104	1.9526	0.00096899	1.2855	0.00063795	496.24648617052696	28.123	0.62878	27.878	27.332	27.961	-0.24524					19	14	2	0	0	0	0.027866	1	1601	1601		64.207	0	1	89654	+		56359	20648	39349	39415	61826	61826					-0.01855993487561136
NTYFYTFGL	9	Unmodified	_NTYFYTFGL_					0	0	0			REV__ENST00000265896.9_1_8:126011396-126011477:+|nuORF	REV__ENST00000265896.9_1_8:126011396-126011477:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2799682617188	2	563.266207	1124.51786	0.32894	0.00018528	-3.8789	-0.0021848	-3.55	-0.0019996	563.2639082177486	51.13	0.48876	50.854	50.589	51.078	-0.27643					22	12	2	0	0	0	0.024511	1	5238	5238		32.812	8.2932	1	289360	+		56360	29753	39350	39416	61827	61827					-0.03941652167941356
NTYFYTFGL	9	Unmodified	_NTYFYTFGL_					0	0	0			REV__ENST00000265896.9_1_8:126011396-126011477:+|nuORF	REV__ENST00000265896.9_1_8:126011396-126011477:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	563.266207	1124.51786	0.37827	0.00021307	-4.2358	-0.0023859	-3.8576	-0.0021728	563.2636978666252	50.89	0.5256	50.779	50.525	51.051	-0.11163	0.0051164	-0.00020018	NaN	25.574	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356180	+		56361	29753	39350	39416							-0.03941652167941356
NTYFYTFGL	9	Unmodified	_NTYFYTFGL_					0	0	0			REV__ENST00000265896.9_1_8:126011396-126011477:+|nuORF	REV__ENST00000265896.9_1_8:126011396-126011477:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	563.266207	1124.51786	0.38769	0.00021838	-4.0778	-0.0022969	-3.6901	-0.0020785	563.2639981382498	50.868	0.5218	50.688	50.462	50.984	-0.18071	-0.085714	-2.2165E-05	NaN	25.574	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406440	+		56362	29753	39350	39416							-0.03941652167941356
NTYLCFLTT	9	Unmodified	_NTYLCFLTT_					0	0	0		nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.28857421875	2	538.260068	1074.50558	-0.50056	-0.00026943	-2.9991	-0.0016143	-3.4997	-0.0018837	538.2585921463317	89.991	0.36497	90.005	89.756	90.121	0.013435					13	8	2	0	0	0	0.024511	1	11257	11257		25.574	0	1	57842			56363	18658	39351	39417	61828	61828					-0.02869011902657803
NTYLCHSYD	9	Unmodified	_NTYLCHSYD_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.83251953125	2	558.226756	1114.43896	-0.20528	-0.00011459	2.9182	0.001629	2.7129	0.0015144	558.2284595585962	39.498	0.45193	39.273	39.059	39.511	-0.2257					16	11	2	0	0	0	0.024447	1	3343	3343		25.574	0	1	121040	+		56364	19991	39352	39418	61829	61829					-0.11368247464542947
NTYMYSQSMLL	11	Unmodified	_NTYMYSQSMLL_					0	0	0			REV__ENST00000535924.6_1_1:85784182-85784302:-|nuORF	REV__ENST00000535924.6_1_1:85784182-85784302:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2470703125	3	450.873796	1349.59956	1.97	0.00088822	-4.4369	-0.0020005	-2.4669	-0.0011122	450.8717359347048	24.246	0.79122	24.065	23.626	24.418	-0.18089					26	17	2	0	0	0	0.024759	1	965	965		12.957	0	1	68632	+		56365	34680	39353	39419	61830	61830					-0.061256608626536035
NVACVPVQ	8	Unmodified	_NVACVPVQ_					0	0	0			REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.87908935546875	2	415.215463	828.416374	-0.68401	-0.00028401	-2.8267	-0.0011737	-3.5108	-0.0014577	415.21417435300947	30.665	0.5892	30.487	30.283	30.872	-0.17818					20	13	2	0	0	0	0.027866	1	1973	1973		3.41	0	1	354780	+		56366	32434	39354	39420	61831	61831					-0.004698020715068196
NVAITRPKA	9	Unmodified	_NVAITRPKA_					0	0	0		nc|ENSG00000073146|Q9BXT6-5|MOV10L1;nc|ENSG00000073146|Q9BXT6-2|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77691650390625	2	485.295633	968.576714	-1.2905	-0.00062629	0.56217	0.00027282	-0.72837	-0.00035348	485.2958161562227	30.471	0.61655	30.471	30.017	30.634	0					23	14	2	0	0	0	0.024405	1	1922	1922		27.882	2.4321	1	195050			56367	18078	39355	39421	61832	61832					0.09116868917033116
NVAKHIKV	8	Unmodified	_NVAKHIKV_					0	0	0			REV__ENSG00000170743|ENST00000318881|SYT9	REV__ENSG00000170743|ENST00000318881|SYT9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.78790283203125	2	454.787444	907.560336	0.72683	0.00033055	-0.49806	-0.00022651	0.22877	0.00010404	454.78700802241934	20.606	0.59213	20.41	20.138	20.73	-0.19577					29	11	4	0	0	0	0.99042	1	571	571		38.806	0	1	244200	+		56368	26499	39356	39422	61833	61833					0.1028578775093365
NVAKPQLLVP	10	Unmodified	_NVAKPQLLVP_					0	0	0			REV__ENST00000464782.5_1_3:141772982-141868333:-|nuORF	REV__ENST00000464782.5_1_3:141772982-141868333:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8330078125	2	539.834591	1077.65463	1.1238	0.00060665	-3.9897	-0.0021538	-2.866	-0.0015472	539.8323394916868	19.137	0.59357	18.903	18.682	19.275	-0.23345					26	11	3	0	0	0	1.089	1	366	366		34.173	0.65696	1	303730	+		56369	32989	39357	39423	61834	61834					0.11890881782414908
NVALSFVK	8	Unmodified	_NVALSFVK_					0	0	0			REV__ENSG00000125730|ENST00000245907|C3	REV__ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.2107849121094	2	439.260728	876.506903	0.11722	5.1489E-05	0.09534	4.1879E-05	0.21256	9.3368E-05	439.26065698431773	50.584	0.55319	50.304	50.145	50.699	-0.27977					19	14	2	0	0	0	0.027866	1	5190	5190		26.693	0	1	301120	+		56370	22835	39358	39424	61835	61835					0.06370990248433372
NVALVLPTP	9	Unmodified	_NVALVLPTP_					0	0	0		ENST00000429243.6_1_12:53839881-53840088:+|nuORF	ENST00000429243.6_1_12:53839881-53840088:+|nuORF	ENST00000429243.6_1_12:53839881-53840088:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2825622558594	2	462.28166	922.548768	0.27194	0.00012571	-0.068676	-3.1748E-05	0.20326	9.3965E-05	462.2814614836224	76.814	0.99651	76.562	75.867	76.863	-0.25162					50	23	3	0	0	0	0.87448	1	9159	9159		34.173	5.023	1	865930			56371	14139	39359	39425	61836	61836					0.0843954593693752
NVANAKNTV	9	Unmodified	_NVANAKNTV_					0	0	0			REV__nc|ENSG00000163635|O15265-3|ATXN7	REV__nc|ENSG00000163635|O15265-3|ATXN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2882995605469	2	465.753798	929.493044	0.041539	1.9347E-05	-3.9946	-0.0018605	-3.953	-0.0018411	465.75222510135075	62.004	0.36749	61.777	61.611	61.979	-0.22663					15	9	3	0	0	0	0.023274	1	7164	7164		87.696	45.222	1	176980	+		56372	25607	39360	39426	61837	61837					0.02547712749344555
NVAPGPVITP	10	Unmodified	_NVAPGPVITP_					0	0	0		CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7768859863281	2	482.776742	963.538931	0.6934	0.00033476	-0.18076	-8.7268E-05	0.51264	0.00024749	482.77627247229407	97.308	1.5198	97.308	96.749	98.269	-3.8147E-05					71	34	4	0	0	0	1.0992	1	12360	12360		32.812	3.6629	1	1009800			56373	606	39361	39427	61838	61838					0.05570357931560466
NVARKAALL	9	Unmodified	_NVARKAALL_					0	0	0		ENSG00000163071|ENST00000295213|SPATA18;nc|ENSG00000163071|Q8TC71-2|SPATA18	ENSG00000163071|ENST00000295213|SPATA18	ENSG00000163071|ENST00000295213|SPATA18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7977294921875	2	478.306001	954.597449	0.5357	0.00025623	-0.25843	-0.00012361	0.27727	0.00013262	478.3057074955782	50.084	0.4942	49.979	49.708	50.202	-0.10558					20	12	2	0	0	0	0.024535	1	5058	5058		25.45	1.2474	1	246870			56374	7031	39362	39428	61839	61839					0.11833459296701676
NVARLPIIDL	10	Unmodified	_NVARLPIIDL_					0	0	0		ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3240356445312	2	562.345323	1122.67609	-0.35702	-0.00020077	0.21776	0.00012246	-0.13926	-7.8311E-05	562.3450550272529	69.469	0.24525	69.247	69.103	69.348	-0.22245					8	5	2	0	0	0	0.03519	1	8056	8056		40.778	22.516	1	88789			56375	10319	39363	39429	61840	61840					0.11966266811123205
NVARYKWS	8	Unmodified	_NVARYKWS_					0	0	0			REV__ENST00000453636.1_1_2:139370257-139370545:+|nuORF	REV__ENST00000453636.1_1_2:139370257-139370545:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2713012695312	2	512.272158	1022.52976	-0.23912	-0.0001225	-2.1173	-0.0010846	-2.3564	-0.0012071	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	1.043	1	13566	13566		30.504	1.3336	1	6463600	+		56376	32750	39364	39430	61841	61841					0.01940009365887363
NVASPVVPTL	10	Unmodified	_NVASPVVPTL_					0	0	0			REV__nc|ENSG00000117751|Q12972-2|PPP1R8	REV__nc|ENSG00000117751|Q12972-2|PPP1R8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7898864746094	2	498.78985	995.565146	-0.11938	-5.9544E-05	0.5248	0.00026176	0.40542	0.00020222	498.78987754002395	73.259	0.82208	73.268	72.735	73.558	0.0096588					52	20	4	0	0	0	0.74632	1	8879	8879		64.207	6.396	1	3580100	+		56377	22373	39365	39431	61842	61842					0.06718627103043673
NVCICIESLL	10	Unmodified	_NVCICIESLL_					0	0	0			REV__ENST00000449913.6_1_5:10433951-10434029:+|nuORF	REV__ENST00000449913.6_1_5:10433951-10434029:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7828979492188	2	553.782853	1105.55115	0.47986	0.00026574	-0.79927	-0.00044262	-0.31941	-0.00017688	553.7823921487068	82.764	2.2274	82.544	82.173	84.401	-0.22015					87	51	2	0	0	0	0.77808	1	10024	10024		62.107	0.41614	1	4488900	+		56378	32689	39366	39432	61843	61843					0.0025989028808908188
NVDFRNGFE	9	Unmodified	_NVDFRNGFE_					0	0	0			REV__ENSG00000149506|ENST00000278853|ZP1	REV__ENSG00000149506|ENST00000278853|ZP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.279296875	2	549.254163	1096.49377	-0.41145	-0.00022599	4.099	0.0022514	3.6876	0.0020254	549.7586837331145	77.896	0.33002	77.896	77.752	78.082	0					9	7	2	0	0	0	0.024466	1	9612	9612		47.657	22.207	1	67647	+		56379	24684	39367	39433	61844	61844					-0.05061492601635109
NVDKRFEGV	9	Unmodified	_NVDKRFEGV_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3040771484375	2	532.28018	1062.54581	1.8491	0.00098422	0.71936	0.0003829	2.5684	0.0013671	532.2806177622721	19.137	0.69299	18.903	18.533	19.226	-0.23345					20	13	2	0	0	0	0.024495	1	399	399		34.173	7.4796	1	30259			56380	10229	39368	39434	61845	61845					0.01703670812139535
NVDKRFEGV	9	Unmodified	_NVDKRFEGV_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.28018	1062.54581	-0.31722	-0.00016885	4.3804	0.0023316	4.0631	0.0021627	532.2821708892575	18.77	0.58918	18.638	18.499	19.089	-0.13148	-0.1893	0.0026751	NaN	26.693	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12859			56381	10229	39368	39434							0.01703670812139535
NVDKRFEGV	9	Unmodified	_NVDKRFEGV_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.28018	1062.54581	0.29838	0.00015882	2.9417	0.0015658	3.2401	0.0017246	532.2819040353417	19.102	0.64353	18.941	18.54	19.183	-0.16079	0.11337	0.0011435	NaN	26.693	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19993			56382	10229	39368	39434							0.01703670812139535
NVDLENQYY	9	Unmodified	_NVDLENQYY_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2;COPS2|p.L127Tfs*6|1|0.07|ENSG00000166200|chr15:49137430-49137431|AA/-|frameshift_variant;ENST00000558545.1_1_15:49431640-49447775:-|nuORF;COPS2|p.F259Lfs*19|1|0.27|ENSG00000166200|chr15:49134047-49134047|A/-|frameshift_variant	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.2894287109375	2	579.259111	1156.50367	0.55272	0.00032017	-1.612	-0.00093375	-1.0592	-0.00061358	579.2578903675818	79.446	0.79331	79.2	78.695	79.488	-0.2465					29	18	2	0	0	0	0.021513	1	9483	9483		71.877	14.066	1	312570			56383	7523	39369	39435	61846	61846					-0.06832349386900205
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7572021484375	2	536.756538	1071.49852	-1.0224	-0.00054878	0.24823	0.00013324	-0.77417	-0.00041554	536.7565093630486	38.304	1.6224	38.125	37.443	39.066	-0.17929					133	45	6	0	0	0	0.012922	5	3137	3127;3137;3149;3160;3172		172.25	89.944	1	23642000			56384	9695	39370	39436	61847;61848;61849;61850;61851	61848					-0.03436608458855517
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.757080078125	2	536.756538	1071.49852	-1.1314	-0.00060728	0.15314	8.2197E-05	-0.97826	-0.00052509	536.7564731622954	38.337	1.6089	38.115	37.504	39.113	-0.22148					134	44	6	0	0	0	0.01896	5	3136	3136;3148;3160;3171;3183		150.36	68.057	1	25224000			56385	9695	39370	39436	61852;61853;61854;61855;61856	61852					-0.03436608458855517
NVDPVQHTY	9	Unmodified	_NVDPVQHTY_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.7559204101562	2	536.756538	1071.49852	-1.1043	-0.00059276	0.02231	1.1975E-05	-1.082	-0.00058078	536.756388191999	38.353	1.6771	38.134	37.463	39.14	-0.21848					127	46	6	0	0	0	0.030064	5	3135	3126;3135;3147;3159;3171		141.52	59.215	1	26015000			56386	9695	39370	39436	61857;61858;61859;61860;61861	61858					-0.03436608458855517
NVEDDYIANL	10	Unmodified	_NVEDDYIANL_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.8323974609375	2	583.272218	1164.52988	-0.10959	-6.392E-05	0.27967	0.00016312	0.17008	9.9203E-05	583.2721135936846	74.971	0.66885	74.788	74.267	74.936	-0.18279					20	15	2	0	0	0	0.03519	1	8849	8849		80.455	14.989	1	66537			56387	15001	39371	39437	61862	61862					-0.0458008021544174
NVEDDYIANL	10	Unmodified	_NVEDDYIANL_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	583.272218	1164.52988	-2.011	-0.0011729	4.5161	0.0026341	2.5051	0.0014612	583.2738430538492	75.175	0.1555	75.175	75.076	75.232	0	0.19353	0.002806	NaN	80.455	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51414			56388	15001	39371	39437							-0.0458008021544174
NVEHLVQKMK	10	Oxidation (M)	_NVEHLVQKM(Oxidation (M))K_		NVEHLVQKM(1)K		NVEHLVQKM(78)K	0	0	1		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.5597839355469	3	414.56054	1240.65979	-0.54448	-0.00022572	-2.4711	-0.0010244	-3.0156	-0.0012501	414.55950089979723	26.527	1.1902	26.363	26.069	27.259	-0.16331					82	29	4	0	0	0	0.58878	1	1366	1366		78.264	7.4476	1	6235000			56389	6280	39372	39438	61863	61863		263			0.04908817582713709
NVEKNRIAVF	10	Unmodified	_NVEKNRIAVF_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.3359375	2	595.33803	1188.66151	-0.51678	-0.00030766	-0.30028	-0.00017877	-0.81707	-0.00048643	595.3379394122497	109.53	0.44467	109.41	109.22	109.67	-0.12453					64	20	5	0	0	0	1.1329	1	13502	13502		27.882	1.0861	1	2955700	+		56390	25072	39373	39439	61864	61864					0.07472194662977927
NVFCTHRVEE	10	Unmodified	_NVFCTHRVEE_					0	0	0			REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	617.286376953125	2	617.287679	1232.56081	-1.296	-0.00080001	-1.7194	-0.0010614	-3.0154	-0.0018614	617.2864647575233	68.684	0.90088	68.422	68.142	69.043	-0.26165					49	21	3	0	0	0	0.88896	1	7941	7941		54.776	5.2403	1	1347400	+		56391	36425	39374	39440	61865	61865					-0.04617205382146494
NVFLHYIY	8	Unmodified	_NVFLHYIY_					0	0	0			REV__ENSG00000168032|ENST00000301825|ENTPD3	REV__ENSG00000168032|ENST00000301825|ENTPD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.7754516601562	2	534.779285	1067.54402	-0.67839	-0.00036279	-3.8434	-0.0020554	-4.5218	-0.0024182	534.7771675687371	63.159	0.79701	62.975	62.704	63.501	-0.18386					35	19	2	0	0	0	0.9224	1	7153	7153		49.211	3.2385	1	5747500	+		56392	26219	39375	39441	61866	61866					0.01294661794190688
NVFNFLHRK	9	Unmodified	_NVFNFLHRK_					0	0	0		ENST00000284425.6_1_17:67087362-67092889:-|nuORF	ENST00000284425.6_1_17:67087362-67092889:-|nuORF	ENST00000284425.6_1_17:67087362-67092889:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.805908203125	2	587.827632	1173.64071	-1.0314	-0.00060631	2.6667	0.0015676	1.6353	0.00096125	587.8288980042109	62.547	0.47095	62.289	61.897	62.368	-0.25824					20	11	3	0	0	0	0.024539	1	6980	6980		20.947	0	1	832190			56393	11745	39376	39442	61867	61867					0.060836490739802684
NVGAFKQP	8	Unmodified	_NVGAFKQP_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.248046875	2	430.734877	859.455202	-0.60591	-0.00026099	1.6085	0.00069285	1.0026	0.00043186	430.7358176640603	44.482	0.24572	44.238	44.08	44.326	-0.2444					9	6	2	0	0	0	0.027866	1	4143	4143		25.45	13.939	1	76426	+		56394	26969	39377	39443	61868	61868					0.01985246554522746
NVGNPAKKTV	10	Unmodified	_NVGNPAKKTV_					0	0	0		nc|ENSG00000112139|Q8NFP4-2|MDGA1;ENSG00000112139|ENST00000434837|MDGA1;ENST00000478143.2_1_6:37617732-37622777:-|nuORF	nc|ENSG00000112139|Q8NFP4-2|MDGA1	nc|ENSG00000112139|Q8NFP4-2|MDGA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.3165283203125	2	514.298373	1026.58219	-0.27121	-0.00013948	1.3061	0.00067171	1.0349	0.00053223	514.2987249155082	32.474	0.56533	32.316	32.121	32.687	-0.15772					21	13	2	0	0	0	0.03519	1	2254	2254		10.265	3.5297	1	117540			56395	3174	39378	39444	61869	61869					0.06996547708831713
NVGSDFKVV	9	Unmodified	_NVGSDFKVV_					0	0	0		ENST00000331768.9_1_14:99864104-99864326:-|nuORF	ENST00000331768.9_1_14:99864104-99864326:-|nuORF	ENST00000331768.9_1_14:99864104-99864326:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.77630615234375	2	482.758549	963.502546	0.32419	0.0001565	-0.13953	-6.736E-05	0.18466	8.9144E-05	482.7583664303804	49.643	0.72796	49.643	49.324	50.052	0					62	19	4	0	0	0	0.024374	1	5147	5147		25.574	0	1	1921900			56396	12347	39379	39445	61870	61870					0.019334810348709652
NVHLRKHTG	9	Unmodified	_NVHLRKHTG_					0	0	0		nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-4|ZFAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2676391601562	2	531.301781	1060.58901	-0.099144	-5.2676E-05	-3.1685	-0.0016834	-3.2676	-0.0017361	531.3010628831619	71.387	1.0784	71.398	70.725	71.803	0.010735					34	27	2	0	0	0	0.024021	1	8610	8610		58.782	11.125	1	221770			56397	1346	39380	39446	61871	61871					0.06113905380061624
NVHVLRTG	8	Unmodified	_NVHVLRTG_					0	0	0		nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	nc|ENSG00000118246|Q9NYY8-2|FASTKD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2580261230469	2	448.259051	894.503549	0.22565	0.00010115	-0.25452	-0.00011409	-0.02888	-1.2946E-05	448.2589828323748	86.522	1.0706	86.336	85.991	87.062	-0.18696					55	24	3	0	0	0	1.0239	1	10493	10493		33.516	3.0119	1	545560			56398	3673	39381	39447	61872	61872					0.052077401944416124
NVIAQGINL	9	Unmodified	_NVIAQGINL_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.3107604980469	2	471.274367	940.53418	0.0049552	2.3352E-06	-1.3709	-0.00064607	-1.3659	-0.00064373	471.27348411753053	20.212	0.24664	20.107	20.03	20.277	-0.10477					10	4	3	0	0	0	0.024436	1	506	506		23.042	12.177	1	96939	+		56399	27569	39382	39448	61873	61873					0.061534737887996016
NVIERLQEA	9	Unmodified	_NVIERLQEA_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3084106445312	2	536.293288	1070.57202	-0.84524	-0.0004533	0.10122	5.4281E-05	-0.74402	-0.00039901	536.293310322438	48.157	0.5458	48.059	47.892	48.438	-0.097553					36	14	3	0	0	0	0.024359	1	4760	4760		65.465	14.273	1	810540			56400	4210	39383	39449	61874	61874					0.039559399836207376
NVIERLQEA	9	Unmodified	_NVIERLQEA_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3067016601562	2	536.293288	1070.57202	-0.557	-0.00029872	-0.52317	-0.00028057	-1.0802	-0.00057929	536.2930232054471	48.303	0.69044	48.116	47.863	48.553	-0.18684					44	18	3	0	0	0	0.024367	1	4765	4765		44.377	5.1244	1	775540			56401	4210	39383	39449	61875	61875					0.039559399836207376
NVIGAMCF	8	Unmodified	_NVIGAMCF_					0	0	0		ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.713623046875	2	427.698592	853.382631	-0.27848	-0.00011911	3.8491	0.0016463	3.5707	0.0015272	427.7006946220311	31.362	0.16656	31.374	31.257	31.424	0.011799					5	3	2	0	0	0	0.027866	1	2073	2073		23.037	0	1	21118			56402	5418	39384	39450	61876	61876					-0.04992546834910172
NVIGRFHVT	9	Unmodified	_NVIGRFHVT_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2503051757812	2	521.793258	1041.57196	0.29124	0.00015197	-3.844	-0.0020058	-3.5527	-0.0018538	521.791107829743	71.394	1.3653	71.132	70.559	71.924	-0.26199					55	32	3	0	0	0	0.024374	1	8455	8455		40.778	6.6056	1	308930			56403	7930	39385	39451	61877	61877					0.05283984774268902
NVIILGPT	8	Unmodified	_NVIILGPT_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ABCC5|p.N795Kfs*20|1|0.09|ENSG00000114770|chr3:183959830-183959831|-/ATTT|frameshift_variant;ABCC5|p.S796Ffs*25|1|0.08|ENSG00000114770|chr3:183959830-183959831|-/ATTTTTAGATTTGTCATCAAAG|frameshift_variant	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.21917724609375	2	413.755278	825.496004	-0.52748	-0.00021825	3.962	0.0016393	3.4345	0.001421	413.75661700832444	40.678	0.48717	40.543	40.381	40.869	-0.13553					19	12	2	0	0	0	0.027866	1	3558	3558		24.203	5.8783	1	100910			56404	3383	39386	39452	61878	61878					0.07627587874151232
NVILISDII	9	Unmodified	_NVILISDII_					0	0	0		nc|ENSG00000047936|P08922|ROS1	nc|ENSG00000047936|P08922|ROS1	nc|ENSG00000047936|P08922|ROS1	MSMS	OPSCC_40_ClassI_Rep-1	4	500.3067626953125	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.024	1	93.886	93.386	94.386	-0.13847								0	0	0	0.53756	1	11572	11572		47.916	3.7988	1				56405	18045	39387	39453	61879	61879					0.10184084279910621
NVILKEAFN	9	Unmodified	_NVILKEAFN_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3238525390625	2	524.295299	1046.57605	0.5032	0.00026382	-0.28577	-0.00014983	0.21743	0.000114	524.2951193566902	49.883	0.48099	49.702	49.458	49.939	-0.18071					30	12	3	0	0	0	0.024539	1	5063	5063		20.947	0	1	724420			56406	7399	39388	39454	61880	61880					0.05462029477325814
NVILKHTGRGI	11	Unmodified	_NVILKHTGRGI_					0	0	0		ENST00000479662.1_1_3:109190178-109190556:-|nuORF	ENST00000479662.1_1_3:109190178-109190556:-|nuORF	ENST00000479662.1_1_3:109190178-109190556:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.366455078125	2	604.367121	1206.71969	-0.63259	-0.00038232	0.014142	8.5468E-06	-0.61845	-0.00037377	604.3669980158905	103.43	1.289	103.31	102.91	104.2	-0.12783					102	34	5	0	0	0	0.98561	1	12872	12872		37.508	3.5865	1	4804600			56407	15176	39389	39455	61881	61881					0.12459876308275852
NVILKHTGRGI	11	Unmodified	_NVILKHTGRGI_					0	0	0		ENST00000479662.1_1_3:109190178-109190556:-|nuORF	ENST00000479662.1_1_3:109190178-109190556:-|nuORF	ENST00000479662.1_1_3:109190178-109190556:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3662109375	2	604.367121	1206.71969	0.12428	7.5109E-05	-0.8283	-0.0005006	-0.70403	-0.00042549	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.017	1	12857	12857		23.523	4.4192	1	4482300			56408	15176	39389	39455	61882	61882					0.12459876308275852
NVILQPLQP	9	Unmodified	_NVILQPLQP_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.8442687988281	2	511.305667	1020.59678	0.011427	5.8428E-06	0.13268	6.7842E-05	0.14411	7.3685E-05	511.30593476530566	76.009	0.38781	75.835	75.66	76.048	-0.17421					18	9	3	0	0	0	0.024436	1	9009	9009		23.042	5.6775	1	173640			56409	3147	39390	39456	61883	61883					0.08730619856999056
NVIMTVLL	8	Unmodified	_NVIMTVLL_					0	0	0			REV__nc|ENSG00000185053|Q96LD1|SGCZ	REV__nc|ENSG00000185053|Q96LD1|SGCZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2493896484375	2	451.772614	901.530675	-0.033476	-1.5124E-05	3.2079	0.0014492	3.1744	0.0014341	451.7729576193269	37.231	0.23018	37.022	36.923	37.153	-0.2092					6	5	2	0	0	0	0.027866	1	2959	2959		68.485	21.718	1	26085	+		56410	27730	39391	39457	61884	61884					0.07597087690589888
NVIQFVEKL	9	Unmodified	_NVIQFVEKL_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3167114257812	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	0.84115	1	10725	10725		36.447	0.82846	1	5204600	+		56411	26806	39392	39458	61885	61885					0.08222889028479585
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8828125	2	641.881793	1281.74903	0.55581	0.00035677	0.43604	0.00027989	0.99186	0.00063666	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	0.96599	1	12321	12321		44.377	5.1244	1	3344500			56412	4576	39393	39459	61886	61886					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8826904296875	2	641.881793	1281.74903	-1.4215	-0.00091243	2.4638	0.0015815	1.0424	0.00066907	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0344	1	11866	11866		29.17	1.0886	1	3558500			56413	4576	39393	39459	61887	61887					0.11942833377111128
NVITTKAS	8	Unmodified	_NVITTKAS_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.2394714355469	2	417.239993	832.465432	0.31115	0.00012982	-2.4499	-0.0010222	-2.1387	-0.00089236	417.23890073393284	87.912	0.94289	87.775	87.372	88.315	-0.13744					37	22	2	0	0	0	0.96769	1	10682	10682		42.396	6.7778	1	1894000	+		56414	27624	39394	39460	61888	61888					0.04249809489101608
NVIVPVPMA	9	Unmodified	_NVIVPVPMA_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4;REV__ENSG00000131398|ENST00000477616|KCNC3	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2723388671875	2	470.270238	938.525924	0.016273	7.6529E-06	4.478	0.0021059	4.4943	0.0021135	470.2722398350845	91.233	1.3697	91.221	90.785	92.155	-0.012383					81	32	4	0	0	0	0.88411	1	11517	11517		33.516	8.0654	1	4459900	+		56415	23034;25957;33686;23208	39395	39461	61889	61889					0.054202035478283506
NVKEELIQ	8	Unmodified	_NVKEELIQ_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15;TMPRSS15|p.C354Lfs*9|1|0.24|ENSG00000154646|chr21:18353013-18353014|-/A|frameshift_variant	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.77203369140625	2	486.771657	971.528761	0.68824	0.00033502	0.56939	0.00027716	1.2576	0.00061218	486.77186570813353	18.466	0.54403	18.31	18.099	18.643	-0.15637					17	10	3	0	0	0	0.68164	1	319	319		68.787	0.30212	1	207630			56416	6423	39396	39462	61890	61890					0.04185750206340799
NVKEKIYAV	9	Unmodified	_NVKEKIYAV_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.3106079101562	2	532.310949	1062.60735	-0.59412	-0.00031626	-0.011914	-6.3418E-06	-0.60604	-0.0003226	532.3109283705681	35.533	1.7268	35.317	35.024	36.751	-0.21555					100	45	5	0	0	0	0.03849	5	2692	2683;2692;2704;2716;2731		134.81	55.36	1	14142000			56417	9825	39397	39463	61891;61892;61893;61894;61895	61892					0.07854602511406483
NVKEKIYAV	9	Unmodified	_NVKEKIYAV_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.310791015625	2	532.310949	1062.60735	-0.82168	-0.00043739	0.10901	5.8025E-05	-0.71268	-0.00037937	532.3110036285905	35.547	1.4125	35.334	35	36.412	-0.21246					96	37	5	0	0	0	0.013094	4	2703	2682;2691;2703;2716		171.38	57.973	1	14357000			56418	9825	39397	39463	61896;61897;61898;61899	61898					0.07854602511406483
NVKEKIYAV	9	Unmodified	_NVKEKIYAV_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.3115844726562	2	532.310949	1062.60735	-0.6556	-0.00034898	-0.13349	-7.106E-05	-0.78909	-0.00042004	532.3108498905166	35.427	1.7999	35.24	34.948	36.748	-0.18675					104	47	5	0	0	0	0.016758	4	2691	2657;2667;2679;2691		153.04	60.519	1	14375000			56419	9825	39397	39463	61900;61901;61902;61903	61903					0.07854602511406483
NVKGTPLPT	9	Unmodified	_NVKGTPLPT_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM;DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.798583984375	2	463.768917	925.523281	1.8034	0.00083637	-1.4261	-0.00066136	0.37736	0.00017501	463.76814437568925	59.212	0.79145	59.025	58.721	59.513	-0.18705					42	21	3	0	0	0	0.024427	1	6686	6686		14.137	0	1	1415400			56420	8174	39398	39464	61904	61904					0.057540714145034144
NVKGTVKEV	9	Unmodified	_NVKGTVKEV_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3033142089844	2	487.287474	972.560395	-0.121	-5.8962E-05	-1.2226	-0.00059576	-1.3436	-0.00065472	487.28709212085556	20.371	0.39022	20.203	19.955	20.345	-0.16774					14	7	3	0	0	0	0.024263	1	518	518		42.396	5.237	1	38598	+		56421	27307	39399	39465	61905	61905					0.07301742960282809
NVKIIKPPM	9	Unmodified	_NVKIIKPPM_					0	0	0			REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|1|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|34	REV__chr5:151266913-151270150|188|19.82|0.39|5.67|+|1|TE_info:L1MC4a,L1MC4a_dup3311,L1,LINE,acceptor,+,151270150,151271608|GM2A,None|34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2737426757812	2	520.320263	1038.62597	-1.6844	-0.0008764	1.4016	0.0007293	-0.28271	-0.0001471	520.8217842925054	90.63	0.71432	90.63	90.173	90.887	0					30	16	2	0	0	0	0.024541	1	11489	11489		17.365	0.89182	1	56851	+		56422	19444	39400	39466	61906	61906					0.10820440881616378
NVKIPRLVD	9	Unmodified	_NVKIPRLVD_					0	0	0		ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	ENSG00000101916|ENST00000218032|TLR8	ENSG00000101916|ENST00000218032|TLR8	MSMS	OPSCC_40_ClassI_Rep-2	5	527.323974609375	2	527.324391	1052.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.326	1	32.133	31.633	32.633	-0.19261								0	0	0	0.64206	1	2215	2215		32.812	1.2826	1				56423	2361	39401	39467	61907	61907					0.11001711122617053
NVKKVPKL	8	Unmodified	_NVKKVPKL_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.31329345703125	2	463.313295	924.612037	0.64931	0.00030083	-0.48733	-0.00022578	0.16198	7.505E-05	463.3128968949162	19.231	0.98985	19.031	18.811	19.801	-0.2001					40	19	4	0	0	0	1.0239	1	414	414		33.516	1.5607	1	572740			56424	9854	39402	39468	61908	61908					0.14671531444844277
NVKLAHVK	8	Unmodified	_NVKLAHVK_					0	0	0		ENSG00000165272|ENST00000297991|AQP3;ENST00000494313.1_1_9:33442043-33443074:-|nuORF;ENST00000493581.1_1_9:33442043-33442319:-|nuORF	ENSG00000165272|ENST00000297991|AQP3	ENSG00000165272|ENST00000297991|AQP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.78753662109375	2	454.787444	907.560336	0.23712	0.00010784	0.026921	1.2243E-05	0.26404	0.00012008	454.78731257009173	20.541	0.68581	20.373	20.098	20.784	-0.16774					26	13	3	0	0	0	0.39824	1	560	560		97.473	28.988	1	302650			56425	7389	39403	39469	61909	61909					0.10285787750945019
NVKLAHVK	8	Unmodified	_NVKLAHVK_					0	0	0		ENSG00000165272|ENST00000297991|AQP3;ENST00000494313.1_1_9:33442043-33443074:-|nuORF;ENST00000493581.1_1_9:33442043-33442319:-|nuORF	ENSG00000165272|ENST00000297991|AQP3	ENSG00000165272|ENST00000297991|AQP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7877197265625	2	454.787444	907.560336	0.72683	0.00033055	-0.49806	-0.00022651	0.22877	0.00010404	454.78700802241934	20.606	0.59213	20.41	20.138	20.73	-0.19577					29	11	4	0	0	0	0.56067	1	559	559		79.939	11.455	1	244200			56426	7389	39403	39469	61910	61910					0.10285787750945019
NVKLAHVK	8	Unmodified	_NVKLAHVK_					0	0	0		ENSG00000165272|ENST00000297991|AQP3;ENST00000494313.1_1_9:33442043-33443074:-|nuORF;ENST00000493581.1_1_9:33442043-33442319:-|nuORF	ENSG00000165272|ENST00000297991|AQP3	ENSG00000165272|ENST00000297991|AQP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.7873840332031	2	454.787444	907.560336	-0.32421	-0.00014745	0.54617	0.00024839	0.22196	0.00010095	454.7875380603815	20.663	0.69449	20.44	20.216	20.911	-0.22344					25	13	3	0	0	0	0.43637	1	549	549		92.191	20.813	1	230380			56427	7389	39403	39469	61911	61911					0.10285787750945019
NVKPAVTLL	9	Unmodified	_NVKPAVTLL_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.802734375	2	477.80276	953.590967	-1.0244	-0.00048946	1.3307	0.00063583	0.30635	0.00014637	477.8030135328487	33.586	0.90438	33.42	33.117	34.021	-0.16565					58	22	5	0	0	0	0.59099	1	2400	2400		53.351	2.016	1	2197700			56428	4512	39404	39470	61912	61912					0.11231521345325746
NVKPHHQL	8	Unmodified	_NVKPHHQL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.772216796875	2	486.772326	971.530098	0.68824	0.00033502	-0.80435	-0.00039154	-0.11612	-5.6522E-05	486.77186570813353	18.466	0.54403	18.31	18.099	18.643	-0.15637					17	10	3	0	0	0	0.21202	1	308	308		138.48	56.175	1	207630			56429	5186	39405	39471	61913	61913					0.043194290857513806
NVKPHHQL	8	Unmodified	_NVKPHHQL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.77239990234375	2	486.772326	971.530098	0.25727	0.00012523	-0.54579	-0.00026568	-0.28852	-0.00014044	486.7720120228036	18.537	0.44578	18.333	18.113	18.559	-0.20371					17	8	3	0	0	0	0.29372	1	311	311		114.59	40.611	1	218050			56430	5186	39405	39471	61914	61914					0.043194290857513806
NVKPHHQL	8	Unmodified	_NVKPHHQL_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.772326	971.530098	3.2307	0.0015726	-3.1848	-0.0015503	0.045851	2.2319E-05	486.77067666801867	18.525	0.24999	18.283	18.124	18.374	-0.24256	-0.025722	-0.0017885	NaN	138.48	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49494			56431	5186	39405	39471							0.043194290857513806
NVKRTQLL	8	Unmodified	_NVKRTQLL_					0	0	0		ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.303466796875	2	486.303458	970.592364	0.54405	0.00026457	-0.69077	-0.00033592	-0.14672	-7.1352E-05	486.30304829852844	20.221	0.8329	19.997	19.582	20.415	-0.22344					31	16	3	0	0	0	0.91239	1	498	498		50.025	2.1089	1	573840			56432	14254	39406	39472	61915	61915					0.10589155434104214
NVKTGQALW	9	Unmodified	_NVKTGQALW_					0	0	0		ENST00000572870.5_1_16:11876234-11876847:-|nuORF	ENST00000572870.5_1_16:11876234-11876847:-|nuORF	ENST00000572870.5_1_16:11876234-11876847:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.76458740234375	2	508.779816	1015.54508	-0.17198	-8.7498E-05	-0.15187	-7.7268E-05	-0.32384	-0.00016477	508.77961073545333	65.969	0.5282	65.727	65.5	66.028	-0.24145					22	12	2	0	0	0	0.024511	1	7559	7559		19.104	6.1443	1	490610			56433	17064	39407	39473	61916	61916					0.03792876163083747
NVLCLIQK	8	Unmodified	_NVLCLIQK_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77740478515625	2	465.775688	929.536823	-0.52619	-0.00024508	4.4718	0.0020829	3.9456	0.0018378	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.96719	1	9723	9723		42.474	1.9018	1	1029300	+		56434	22099	39408	39474	61917	61917					0.06923605922122533
NVLEDFSIW	9	Unmodified	_NVLEDFSIW_					0	0	0		ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.322509765625	2	561.776939	1121.53933	-0.41444	-0.00023282	1.0529	0.0005915	0.63846	0.00035867	562.2798374679327	70.044	0.75237	69.777	69.247	69.999	-0.26725					33	17	6	0	0	0	0.024381	1	8118	8118		29.15	0	1	650730			56435	4743	39409	39475	61918	61918					-0.016582671392370685
NVLEDFSIW	9	Unmodified	_NVLEDFSIW_					0	0	0		ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	561.776939	1121.53933	-0.58392	-0.00032803	0.51295	0.00028816	-0.070968	-3.9868E-05	561.7769966153057	69.819	0.56822	69.832	69.503	70.071	0.012421	0.087291	0.00035447	NaN	27.882	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2092400			56436	4743	39409	39475							-0.016582671392370685
NVLFWDNI	8	Unmodified	_NVLFWDNI_					0	0	0		ENST00000439492.1_1_22:24269897-24270236:+|nuORF	ENST00000439492.1_1_22:24269897-24270236:+|nuORF	ENST00000439492.1_1_22:24269897-24270236:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.78948974609375	2	510.761092	1019.50763	0.5957	0.00030426	0.42123	0.00021515	1.0169	0.00051941	510.7616369683827	85.741	0.58486	85.741	85.5	86.085	0					19	13	2	0	0	0	0.027866	1	10760	10760		25.45	0	1	208300			56437	14335	39410	39476	61919	61919					-0.0013421510253692759
NVLFYVKRR	9	Unmodified	_NVLFYVKRR_					0	0	0		ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.856201171875	2	597.858932	1193.70331	-1.6739	-0.0010008	-2.9165	-0.0017437	-4.5904	-0.0027444	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	0.87448	1	11739	11739		34.173	5.0025	1	4454900			56438	13651	39411	39477	61920	61920					0.11420795142180395
NVLFYVKRR	9	Unmodified	_NVLFYVKRR_					0	0	0		ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.856689453125	2	597.858932	1193.70331	-0.69485	-0.00041542	-3.8503	-0.002302	-4.5452	-0.0027174	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.85329	2	11700	11700;11750		35.618	5.3006	1	4386000			56439	13651	39411	39477	61921;61922	61921					0.11420795142180395
NVLFYVKRR	9	Unmodified	_NVLFYVKRR_					0	0	0		ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8558959960938	2	597.858932	1193.70331	-1.8915	-0.0011309	-2.7233	-0.0016281	-4.6148	-0.002759	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	0.87448	2	11438	11390;11438		34.173	3.5755	1	5655800			56440	13651	39411	39477	61923;61924	61924					0.11420795142180395
NVLFYVKRR	9	Unmodified	_NVLFYVKRR_					0	0	0		ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8565673828125	2	597.858932	1193.70331	-0.56214	-0.00033608	-4.1507	-0.0024815	-4.7128	-0.0028176	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	0.85329	1	11530	11530		35.618	2.8059	1	5880700			56441	13651	39411	39477	61925	61925					0.11420795142180395
NVLHRCHDL	9	Unmodified	_NVLHRCHDL_					0	0	0			REV__ENST00000423931.1_1_3:192874339-192874504:-|nuORF	REV__ENST00000423931.1_1_3:192874339-192874504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8248901367188	2	553.779825	1105.5451	-0.038479	-2.1309E-05	1.1499	0.00063681	1.1115	0.0006155	553.78062251268	75.101	0.71851	75.112	74.855	75.574	0.010376					22	18	2	0	0	0	0.024405	1	9191	9191		35.618	4.0885	1	444050	+		56442	32226	39412	39478	61926	61926					-0.0034544710856607708
NVLIDLVQV	9	Unmodified	_NVLIDLVQV_					0	0	0			REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|61	REV__chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|61	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8053894042969	2	506.8055	1011.59645	0.19333	9.7979E-05	-0.57631	-0.00029208	-0.38298	-0.0001941	506.8050414263252	89.394	0.87292	89.409	89.133	90.006	0.015907					61	20	4	0	0	0	0.17822	1	11213	11213		93.195	2.5946	1	1264500	+		56443	19416	39413	39479	61927	61927					0.0911120013714708
NVLKLIGLM	9	Unmodified	_NVLKLIGLM_					0	0	0		nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;TMC3|p.H900Tfs*17|1|0.11|ENSG00000188869|chr15:81333024-81333025|-/T|frameshift_variant;ENSG00000188869|ENST00000359440|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2804870605469	2	500.814813	999.615073	0.90547	0.00045348	3.1219	0.0015635	4.0274	0.002017	500.8159877657804	97.105	0.31223	96.981	96.75	97.063	-0.12368					8	6	2	0	0	0	0.024523	1	12024	12024		21.96	4.5949	1	27856			56444	9762	39414	39480	61928	61928					0.11525038507363661
NVLLKIAEH	9	Unmodified	_NVLLKIAEH_					0	0	0			REV__ENSG00000158796|ENST00000368006|DEDD	REV__ENSG00000158796|ENST00000368006|DEDD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.8107299804688	2	518.811116	1035.60768	0.53798	0.00027911	-2.1305	-0.0011053	-1.5925	-0.00082622	518.8099775695938	96.776	1.4907	96.639	95.978	97.468	-0.13671					99	33	4	0	0	0	0.67687	1	11949	11949		47.657	6.8792	1	1624000	+		56445	25219	39415	39481	61929	61929					0.09130022231261137
NVLLKIAEH	9	Unmodified	_NVLLKIAEH_					0	0	0			REV__ENSG00000158796|ENST00000368006|DEDD	REV__ENSG00000158796|ENST00000368006|DEDD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.8099975585938	2	518.811116	1035.60768	0.7238	0.00037552	-2.1456	-0.0011131	-1.4218	-0.00073763	518.8098889136849	95.14	1.3841	95.018	94.641	96.025	-0.12251					65	31	3	0	0	0	0.6504	1	11747	11747		49.442	10.635	1	1303400	+		56446	25219	39415	39481	61930	61930					0.09130022231261137
NVLLKIAEH	9	Unmodified	_NVLLKIAEH_					0	0	0			REV__ENSG00000158796|ENST00000368006|DEDD	REV__ENSG00000158796|ENST00000368006|DEDD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.81005859375	2	518.811116	1035.60768	-0.14392	-7.4668E-05	-1.3142	-0.00068184	-1.4582	-0.00075651	518.8102552827737	95.189	1.2171	95.037	94.71	95.927	-0.15186					63	27	3	0	0	0	0.72875	1	11732	11732		44.117	1.7207	1	1305800	+		56447	25219	39415	39481	61931	61931					0.09130022231261137
NVLNHSNK	8	Unmodified	_NVLNHSNK_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.79827880859375	2	463.246141	924.477728	0.15755	7.2986E-05	-0.31352	-0.00014524	-0.15596	-7.225E-05	463.24607085041885	41.809	0.51502	41.809	41.505	42.02	0					21	14	2	0	0	0	0.027866	1	3766	3766		18.324	0	1	164390			56448	8227	39416	39482	61932	61932					0.012468459521414843
NVLPPLIVQN	10	Unmodified	_NVLPPLIVQN_					0	0	0			REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8296508789062	2	553.832049	1105.64954	-0.047374	-2.6237E-05	-3.6408	-0.0020164	-3.6882	-0.0020426	553.829864190126	87.126	2.4196	87.09	85.747	88.167	-0.035355					169	57	4	0	0	0	1.0781	1	10933	10933		35.618	1.4457	1	1369000	+		56449	29359	39417	39483	61933	61933					0.10094577919812764
NVLPPLIVQN	10	Unmodified	_NVLPPLIVQN_					0	0	0			REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8302001953125	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	1.1329	1	10576	10576		27.882	1.1893	1	1711900	+		56450	29359	39417	39483	61934	61934					0.10094577919812764
NVLPPLIVQN	10	Unmodified	_NVLPPLIVQN_					0	0	0			REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.829833984375	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0992	1	10862	10862		32.812	0	1	6583300	+		56451	29359	39417	39483	61935	61935					0.10094577919812764
NVLPPLIVQN	10	Unmodified	_NVLPPLIVQN_					0	0	0			REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8302612304688	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.1307	1	10894	10894		26.693	2.1737	1	6921700	+		56452	29359	39417	39483	61936	61936					0.10094577919812764
NVLPVRLY	8	Unmodified	_NVLPVRLY_					0	0	0			REV__F9|p.D378N|1|0.11|ENSG00000101981|chrX:139561817-139561817|G/A|missense_variant	REV__F9|p.D378N|1|0.11|ENSG00000101981|chrX:139561817-139561817|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2933654785156	2	487.295102	972.575651	-1.0283	-0.00050109	-2.9893	-0.0014567	-4.0176	-0.0019578	487.2935230080693	90.04	1.2078	89.877	89.429	90.637	-0.16245					81	28	4	0	0	0	1.0574	1	11001	11001		26.796	3.7536	1	2703700	+		56453	36018	39418	39484	61937	61937					0.0882665454812468
NVLQRTLSA	9	Unmodified	_NVLQRTLSA_					0	0	0		nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2904052734375	2	501.290548	1000.56654	0.66254	0.00033212	-0.80898	-0.00040553	-0.14644	-7.3409E-05	501.2899933789471	88.245	1.3927	88.263	87.909	89.302	0.018555					71	32	4	0	0	0	0.6238	1	11039	11039		51.193	9.7661	1	968330			56454	18404	39419	39485	61938	61938					0.06628261191804086
NVLQRTLSA	9	Unmodified	_NVLQRTLSA_					0	0	0		nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904357910156	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.56934	1	10575	10575		54.776	1.8396	1	10557000			56455	18404	39419	39485	61939	61939					0.06628261191804086
NVLQRTLSA	9	Unmodified	_NVLQRTLSA_					0	0	0		nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2900390625	2	501.290548	1000.56654	0.41475	0.00020791	-0.66528	-0.0003335	-0.25053	-0.00012559	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	0.67687	3	10071	10071;10083;10182		47.657	12.505	1	2920800			56456	18404	39419	39485	61940;61941;61942	61940					0.06628261191804086
NVLQRTLSA	9	Unmodified	_NVLQRTLSA_					0	0	0		nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2899475097656	2	501.290548	1000.56654	-0.25386	-0.00012726	-0.032713	-1.6399E-05	-0.28657	-0.00014365	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.77768	1	10167	10167		40.778	5.1599	1	2648000			56457	18404	39419	39485	61943	61943					0.06628261191804086
NVLQRTLSA	9	Unmodified	_NVLQRTLSA_					0	0	0		nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	501.290548	1000.56654	0.40529	0.00020317	-0.52388	-0.00026262	-0.11859	-5.945E-05	501.2901072345097	88.222	1.3061	88.222	87.922	89.228	0	0.00070422	-0.00031084	NaN	51.193	72	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995670			56458	18404	39419	39485							0.06628261191804086
NVLQSLPSRV	10	Unmodified	_NVLQSLPSRV_					0	0	0		ENST00000492784.1_1_9:131675062-131678647:+|nuORF;ENSG00000136802|ENST00000372600|LRRC8A	ENST00000492784.1_1_9:131675062-131678647:+|nuORF	ENST00000492784.1_1_9:131675062-131678647:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.295654296875	2	556.824755	1111.63496	-0.44059	-0.00024533	0.38086	0.00021207	-0.059729	-3.3259E-05	556.824767170005	30.573	0.57961	30.647	30.212	30.792	0.074314					25	13	3	0	0	0	0.03519	1	1883	1883		42.396	13.247	1	177340			56459	5044	39420	39486	61944	61944					0.0836050577165679
NVLSILPMA	9	Unmodified	_NVLSILPMA_					0	0	0			REV__nc|ENSG00000117528|P28288-3|ABCD3	REV__nc|ENSG00000117528|P28288-3|ABCD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.27752685546875	2	479.275521	956.536489	0.21198	0.0001016	4.1284	0.0019786	4.3404	0.0020802	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.90698	1	10571	10571		31.955	0	1	4888300	+		56460	22353	39421	39487	61945	61945					0.05648186202256511
NVLSILPMA	9	Unmodified	_NVLSILPMA_					0	0	0			REV__nc|ENSG00000117528|P28288-3|ABCD3	REV__nc|ENSG00000117528|P28288-3|ABCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27752685546875	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.75397	1	10272	10272		42.396	10.441	1	7158600	+		56461	22353	39421	39487	61946	61946					0.05648186202256511
NVLSILPMA	9	Unmodified	_NVLSILPMA_					0	0	0			REV__nc|ENSG00000117528|P28288-3|ABCD3	REV__nc|ENSG00000117528|P28288-3|ABCD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27703857421875	2	479.275521	956.536489	0.2758	0.00013219	3.6384	0.0017438	3.9142	0.001876	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.85329	1	10306	10306		35.618	2.8059	1	7407200	+		56462	22353	39421	39487	61947	61947					0.05648186202256511
NVLSLLGI	8	Unmodified	_NVLSLLGI_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.7618713378906	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	1.0338	1	11100	11100		31.955	1.4512	1	53595000			56463	2741	39422	39488	61948	61948					0.09099874391188223
NVLSPRYEI	9	Unmodified	_NVLSPRYEI_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7753295898438	2	545.798206	1089.58186	-0.94001	-0.00051305	1.4567	0.00079508	0.51672	0.00028203	545.798318239485	52.882	0.44864	52.882	52.711	53.16	0					13	11	2	0	0	0	0.024488	1	5662	5662		26.063	0	1	75508			56464	1927	39423	39489	61949	61949					0.04065127988997119
NVLSSQLFLL	10	Unmodified	_NVLSSQLFLL_					0	0	0		ENST00000467251.1_1_7:134129830-134129944:-|nuORF	ENST00000467251.1_1_7:134129830-134129944:-|nuORF	ENST00000467251.1_1_7:134129830-134129944:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3300170898438	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0616	1	11772	11772		37.812	4.9991	1	14057000			56465	14832	39424	39490	61950	61950					0.0881915819995811
NVLTMEPIV	9	Unmodified	_NVLTMEPIV_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	ENSG00000275023|ENST00000621332|MLLT6;MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3268127441406	2	508.27826	1014.54197	0.046438	2.3603E-05	2.9254	0.0014869	2.9718	0.0015105	508.27964034097494	19.968	0.57832	19.8	19.423	20.002	-0.16774					17	11	2	0	0	0	0.024292	1	499	499		58.782	14.665	1	11080			56466	11033;17978	39425	39491	61951	61951					0.035278649940664764
NVLVLLPHTG	10	Unmodified	_NVLVLLPHTG_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.812744140625	2	531.818941	1061.62333	-0.10178	-5.4126E-05	-3.7455	-0.001992	-3.8473	-0.0020461	531.8169476321214	100.18	0.79416	100.01	99.663	100.46	-0.17088					37	24	2	0	0	0	1.0508	1	12439	12439		39.253	2.8061	1	549540	+		56467	20237	39426	39492	61952	61952					0.09498308748334239
NVLVLVLPGPE	11	Unmodified	_NVLVLVLPGPE_					0	0	0		ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3453979492188	2	575.347532	1148.68051	0.52304	0.00030093	-4.1315	-0.0023771	-3.6085	-0.0020761	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	1.0292	1	12354	12354		30.318	1.1477	1	4068000			56468	7680	39427	39493	61953	61953					0.11211731234061517
NVLVPLSRS	9	Unmodified	_NVLVPLSRS_					0	0	0		ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7675476074219	2	492.795466	983.57638	-0.77163	-0.00038025	3.8552	0.0018998	3.0836	0.0015196	492.797352062648	52.58	0.75517	52.452	52.078	52.833	-0.12705					29	18	2	0	0	0	0.024511	1	5515	5515		25.574	18.381	1	1006100			56469	1115	39428	39494	61954	61954					0.08393449197194514
NVLVPLSRS	9	Unmodified	_NVLVPLSRS_					0	0	0		ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.795466	983.57638	-0.060651	-2.9889E-05	-1.3608	-0.00067058	-1.4214	-0.00070047	492.7944878884996	52.427	0.74154	52.427	52.16	52.901	0	-0.051453	-0.0031264	NaN	23.523	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87921			56470	1115	39428	39494							0.08393449197194514
NVLVPLSRS	9	Unmodified	_NVLVPLSRS_					0	0	0		ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.795466	983.57638	-0.1585	-7.8106E-05	-0.5073	-0.00024999	-0.6658	-0.0003281	492.7947261755763	52.373	0.62993	52.465	52.119	52.749	0.091938	-0.013824	-0.0022852	NaN	23.523	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213900			56471	1115	39428	39494							0.08393449197194514
NVLVRKHPGTG	11	Unmodified	_NVLVRKHPGTG_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3429565429688	2	589.343646	1176.67274	-1.1102	-0.00065427	-0.23125	-0.00013629	-1.3414	-0.00079055	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	0.9728	1	11481	11481		42.864	11.334	1	4794700			56472	1265	39429	39495	61955	61955					0.09147016757151505
NVLVRKHPGTG	11	Unmodified	_NVLVRKHPGTG_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3424072265625	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0344	1	11354	11354		29.17	2.1227	1	15816000			56473	1265	39429	39495	61956	61956					0.09147016757151505
NVMLLALGCV	10	Unmodified	_NVMLLALGCV_					0	0	0			REV__ENST00000445430.5_1_3:195408453-195410886:+|nuORF	REV__ENST00000445430.5_1_3:195408453-195410886:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7479248046875	2	516.782656	1031.55076	-0.028215	-1.4581E-05	1.248	0.00064495	1.2198	0.00063037	517.2842227095219	63.453	0.54572	63.26	62.947	63.493	-0.19243					31	13	4	0	0	0	0.03519	1	7206	7206		20.947	0	1	407490	+		56474	32613	39430	39496	61957	61957					0.036245153588879475
NVMLRKIAV	9	Unmodified	_NVMLRKIAV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.3232421875	2	522.323337	1042.63212	0.074887	3.9115E-05	-0.56993	-0.00029769	-0.49505	-0.00025857	522.3228715149083	45.384	0.81185	45.131	44.826	45.638	-0.25252					62	22	4	0	0	0	0.06122	2	4273	4273;4284		124.59	58.791	1	4434300			56475	5632	39431	39497	61958;61959	61958					0.1125095911313565
NVMLRKIAV	9	Unmodified	_NVMLRKIAV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.3238525390625	2	522.323337	1042.63212	-0.30418	-0.00015888	-0.11938	-6.2355E-05	-0.42356	-0.00022124	522.3231290201256	45.336	0.80041	45.125	44.754	45.554	-0.21109					63	22	4	0	0	0	0.27161	1	4272	4272		79.451	37.055	1	4266000			56476	5632	39431	39497	61960	61960					0.1125095911313565
NVMLRKIAV	9	Unmodified	_NVMLRKIAV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.323337	1042.63212	-1.2079	-0.0006309	8.3834	0.0043788	7.1755	0.0037479	522.3277501811245	44.833	0.34728	44.833	44.622	44.97	0	-0.15606	0.0081276	NaN	124.59	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235870			56477	5632	39431	39497							0.1125095911313565
NVMLRKIAV	9	Unmodified	_NVMLRKIAV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.323337	1042.63212	-1.0452	-0.00054591	7.4306	0.0038812	6.3855	0.0033353	522.3272812594518	44.987	0.34723	44.839	44.662	45.009	-0.1488	-0.15021	0.0071322	NaN	124.59	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195750			56478	5632	39431	39497							0.1125095911313565
NVMLRKIAV	9	Unmodified	_NVMLRKIAV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.323337	1042.63212	-0.35295	-0.00018436	6.9823	0.003647	6.6294	0.0034627	522.3266968819167	44.853	0.27997	44.89	44.715	44.995	0.0369	-0.09915	0.0066639	NaN	124.59	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206470			56479	5632	39431	39497							0.1125095911313565
NVMLRKIAV	9	Unmodified	_NVMLRKIAV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.323337	1042.63212	-0.80661	-0.00042131	0.33236	0.0001736	-0.47425	-0.00024771	522.3234151491673	45.215	0.77671	45.116	44.749	45.526	-0.099445	0.12713	-0.00028293	NaN	124.59	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4374500			56480	5632	39431	39497							0.1125095911313565
NVNEVQEAR	9	Unmodified	_NVNEVQEAR_					0	0	0			REV__ENST00000307201.4_1_17:27888928-27889195:-|nuORF	REV__ENST00000307201.4_1_17:27888928-27889195:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7822875976562	2	529.764894	1057.51524	0.29688	0.00015728	-3.3503	-0.0017749	-3.0534	-0.0016176	529.7627544289265	88.947	2.4615	88.962	87.215	89.676	0.015907					119	58	3	0	0	0	0.024456	1	11156	11156		28.081	0.19925	1	321460	+		56481	30132	39432	39498	61961	61961					-0.011221075729281438
NVNEVQEAR	9	Unmodified	_NVNEVQEAR_					0	0	0			REV__ENST00000307201.4_1_17:27888928-27889195:-|nuORF	REV__ENST00000307201.4_1_17:27888928-27889195:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.764894	1057.51524	-0.37846	-0.0002005	-2.563	-0.0013578	-2.9414	-0.0015583	529.7631425516774	89.265	2.918	89.265	86.605	89.523	0	0.18373	0.00048255	NaN	35.152	108	69	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302950	+		56482	30132	39432	39498							-0.011221075729281438
NVNEVQEAR	9	Unmodified	_NVNEVQEAR_					0	0	0			REV__ENST00000307201.4_1_17:27888928-27889195:-|nuORF	REV__ENST00000307201.4_1_17:27888928-27889195:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.764894	1057.51524	0.25575	0.00013549	-2.9854	-0.0015815	-2.7296	-0.001446	529.7629341868535	89.039	1.5553	89.017	87.896	89.451	-0.021645	-0.064574	3.501E-05	NaN	35.152	73	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291300	+		56483	30132	39432	39498							-0.011221075729281438
NVNIIYGLT	9	Unmodified	_NVNIIYGLT_					0	0	0		nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7816467285156	2	503.782025	1005.5495	0.26613	0.00013407	0.20317	0.00010235	0.4693	0.00023642	503.782026054783	87.632	0.84707	87.597	87.236	88.083	-0.035355					44	20	3	0	0	0	0.34489	1	10986	10986		69.628	0.8408	1	1579300			56484	18541	39433	39499	61962	61962					0.04694340586001999
NVNKALIYL	9	Unmodified	_NVNKALIYL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2264404296875	2	524.313492	1046.61243	0.073826	3.8708E-05	0.015034	7.8825E-06	0.08886	4.6591E-05	524.3134569707971	52.919	0.54908	52.729	52.47	53.019	-0.18982					32	13	3	0	0	0	0.024436	1	5477	5477		38.806	16.846	1	802430			56485	9981	39434	39500	61963	61963					0.09098906374038052
NVNKSPLI	8	Unmodified	_NVNKSPLI_					0	0	0			REV__nc|ENSG00000186812|Q8NF99-2|ZNF397	REV__nc|ENSG00000186812|Q8NF99-2|ZNF397	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.265380859375	2	442.763635	883.512717	-0.71347	-0.0003159	-2.7008	-0.0011958	-3.4143	-0.0015117	442.76201090360297	39.472	0.21168	39.373	39.269	39.48	-0.098751					8	5	2	0	0	0	0.027866	1	3375	3375		24.203	0	1	112220	+		56486	37030	39435	39501	61964	61964					0.06630088760084618
NVNLVRALLTR	11	Unmodified	_NVNLVRALLTR_					0	0	0		nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.8932495117188	2	634.893503	1267.77245	-0.77889	-0.00049451	-1.0276	-0.0006524	-1.8065	-0.0011469	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	1.0465	1	13019	13019		26.063	0.48933	1	1853200			56487	4241	39436	39502	61965	61965					0.1492783437106482
NVPDVRLI	8	Unmodified	_NVPDVRLI_					0	0	0			REV__ENSG00000130656|ENST00000252951|HBZ	REV__ENSG00000130656|ENST00000252951|HBZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.2771301269531	2	463.276909	924.539266	0.27493	0.00012737	-0.5678	-0.00026305	-0.29287	-0.00013568	463.27661215702	59.522	0.95211	59.273	58.847	59.8	-0.24842					50	23	3	0	0	0	0.6248	1	6567	6567		73.975	0	1	980880	+		56488	23132	39437	39503	61966	61966					0.07397777651419801
NVPGAYIYAVS	11	Unmodified	_NVPGAYIYAVS_					0	0	0		nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.3172607421875	2	577.298039	1152.58152	0.19341	0.00011165	2.321	0.0013399	2.5144	0.0014516	577.2992843707389	71.921	0.31514	71.646	71.473	71.788	-0.27509					9	7	2	0	0	0	0.024727	1	8411	8411		20.837	2.5127	1	124030			56489	5260	39438	39504	61967	61967					0.011337082691397882
NVPLISLAH	9	Unmodified	_NVPLISLAH_					0	0	0		nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2840270996094	2	482.284734	962.554916	0.37357	0.00018017	-2.9939	-0.0014439	-2.6204	-0.0012638	482.28309374728553	18.002	0.83763	17.87	17.514	18.352	-0.13147					28	16	3	0	0	0	0.94809	1	227	227		29.15	0.89528	1	86735			56490	2508	39439	39505	61968	61968					0.07214064168465484
NVPSFRRSAFG	11	Unmodified	_NVPSFRRSAFG_					0	0	0		ENST00000409881.1_1_7:30898614-30931617:+|nuORF	ENST00000409881.1_1_7:30898614-30931617:+|nuORF	ENST00000409881.1_1_7:30898614-30931617:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.21929931640625	3	413.219395	1236.63635	-0.91717	-0.00037899	0.27852	0.00011509	-0.63864	-0.0002639	413.2194822435031	40.96	0.90365	40.729	40.45	41.354	-0.23029					65	23	4	0	0	0	0.99147	1	3595	3595		38.714	7.0798	1	4584700			56491	13796	39440	39506	61969	61969					0.027501398604272254
NVPTRAPTE	9	Unmodified	_NVPTRAPTE_					0	0	0		ENST00000326685.11_1_5:148638855-148639278:+|nuORF	ENST00000326685.11_1_5:148638855-148639278:+|nuORF	ENST00000326685.11_1_5:148638855-148639278:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.8008728027344	2	492.759081	983.503609	-0.62648	-0.0003087	1.1209	0.00055232	0.49438	0.00024361	492.7596337292527	36.309	0.79836	36.309	35.886	36.685	0					36	22	2	0	0	0	0.024261	1	2867	2867		30.318	4.7437	1	474970			56492	12282	39441	39507	61970	61970					0.011196954037586693
NVQAIDEGWMY	11	Unmodified	_NVQAIDEGWMY_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.251708984375	3	442.532539	1324.57579	-0.70931	-0.00031389	-4.1016	-0.0018151	-4.8109	-0.002129	442.53083251191964	45.225	0.41275	45.126	44.977	45.39	-0.099445					20	11	2	0	0	0	0.024801	1	4288	4288		29.551	28.132	1	232850			56493	9199	39442	39508	61971	61971					-0.07351758304844225
NVQAIDEGWMY	11	Unmodified	_NVQAIDEGWMY_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.25225830078125	3	442.532539	1324.57579	-0.13935	-6.1668E-05	-4.3988	-0.0019466	-4.5381	-0.0020083	442.5305945765951	45.587	0.54663	45.334	45.019	45.566	-0.25252					25	15	2	0	0	0	0.024801	1	4282	4282		23.378	0.81632	1	235180			56494	9199	39442	39508	61972	61972					-0.07351758304844225
NVQIDVVN	8	Unmodified	_NVQIDVVN_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.268310546875	2	450.742899	899.471246	-0.46055	-0.00020759	0.50565	0.00022792	0.045103	2.033E-05	450.74307641128365	48.674	0.60313	48.741	48.486	49.089	0.066795					33	16	3	0	0	0	0.027866	1	4960	4960		23.042	0	1	380630	+		56495	28369	39443	39509	61973	61973					0.017489080007635494
NVQLKPNLK	9	Unmodified	_NVQLKPNLK_					0	0	0			REV__ENST00000340918.11_1_14:57702520-57706319:-|nuORF	REV__ENST00000340918.11_1_14:57702520-57706319:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	527.3244018554688	2	527.324391	1052.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.236	1	31.999	31.499	32.499	-0.23667								0	0	0	0.40817	1	2208	2208		60.972	0.67798	1		+		56496	30624	39444	39510	61974	61974					0.11001711122594315
NVQQISEF	8	Unmodified	_NVQQISEF_					0	0	0			REV__MOK|p.E43Q|1|0.19|ENSG00000080823|chr14:102265908-102265908|C/G|missense_variant	REV__MOK|p.E43Q|1|0.19|ENSG00000080823|chr14:102265908-102265908|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2841491699219	2	482.740357	963.46616	-0.64609	-0.00031189	-0.28814	-0.0001391	-0.93423	-0.00045099	482.7399943060751	39.176	0.73018	38.953	38.652	39.382	-0.22311					41	19	4	0	0	0	0.027866	1	3271	3271		45.952	0	1	1160700	+		56497	36394	39445	39511	61975	61975					-0.017033958618526412
NVQVPFFTI	9	Unmodified	_NVQVPFFTI_					0	0	0			REV__ENSG00000103479|ENST00000262133|RBL2	REV__ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7899169921875	2	532.792392	1063.57023	-0.47611	-0.00025367	-3.6515	-0.0019455	-4.1276	-0.0021992	532.7901032936312	64.277	1.1155	64.049	63.74	64.856	-0.22774					70	27	5	0	0	0	0.53979	1	7300	7300		56.721	0.28726	1	3120300	+		56498	21387	39446	39512	61976	61976					0.04098930965665204
NVQYFLDRFYM	11	Unmodified	_NVQYFLDRFYM_					0	0	0		ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1	ENSG00000152256|ENST00000282077|PDK1	ENSG00000152256|ENST00000282077|PDK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7840270996094	3	499.239467	1494.69657	0.18251	9.1119E-05	0.28241	0.00014099	0.46493	0.00023211	499.23945631795067	47.076	0.46265	46.923	46.698	47.161	-0.15301					29	11	3	0	0	0	0.024856	1	4702	4702		13.508	0.55046	1	351380			56499	6263	39447	39513	61977	61977					-0.030989305913863063
NVRPPKKV	8	Unmodified	_NVRPPKKV_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.76654052734375	2	469.300719	936.586885	0.34241	0.00016069	-0.15418	-7.2356E-05	0.18823	8.8336E-05	469.30045708847393	36.845	0.50291	36.782	36.588	37.091	-0.063389					28	12	3	0	0	0	0.027866	1	2927	2927		12.959	0	1	240740			56500	8336	39448	39514	61978	61978					0.11605476642273516
NVRPPNTAL	9	Unmodified	_NVRPPNTAL_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2716979980469	2	491.277441	980.540328	0.31304	0.00015379	-1.1193	-0.00054986	-0.80621	-0.00039607	491.27674148437404	40.241	1.3135	40.241	39.594	40.908	0					82	36	4	0	0	0	0.17822	3	3506	3506;3519;3531		93.195	24.409	1	5963200			56501	8805	39449	39515	61979;61980;61981	61979					0.049279920203161964
NVRPPNTAL	9	Unmodified	_NVRPPNTAL_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.27435302734375	2	491.277441	980.540328	0.093627	4.5997E-05	-0.65868	-0.0003236	-0.56506	-0.0002776	491.2769532228571	40.36	1.3856	40.247	39.568	40.954	-0.11223					77	37	4	0	0	0	0.17822	4	3505	3505;3520;3532;3544		93.195	21.318	1	5321000			56502	8805	39449	39515	61982;61983;61984;61985	61982					0.049279920203161964
NVRPPNTAL	9	Unmodified	_NVRPPNTAL_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.27728271484375	2	491.277441	980.540328	-0.85017	-0.00041767	0.20438	0.00010041	-0.64579	-0.00031726	491.2773623778141	40.423	1.3428	40.446	39.84	41.182	0.023003					80	37	4	0	0	0	0.19099	2	3509	3485;3509		90.37	21.583	1	6116300			56503	8805	39449	39515	61986;61987	61987					0.049279920203161964
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.811279296875	2	518.811116	1035.60768	-1.223	-0.00063451	0.56807	0.00029472	-0.65493	-0.00033979	518.8114634808165	60.562	1.273	60.562	60.219	61.492	0					79	33	4	0	0	0	0.057894	3	6965	6965;6975;6989		125.81	53.597	1	5881100			56504	5711	39450	39516	61988;61989;61990	61988					0.09130022231261137
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.8110961914062	2	518.811116	1035.60768	-0.72941	-0.00037843	1.0038	0.00052081	0.27443	0.00014238	518.8112174081294	60.846	1.3516	60.633	60.273	61.625	-0.21339					97	35	5	0	0	0	0.033448	2	6985	6973;6985		138.83	70.039	1	5869100			56505	5711	39450	39516	61991;61992	61992					0.09130022231261137
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	OPSCC_39_ClassI_Rep-3	3	518.8109130859375	2	518.811116	1035.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.469	1	60.548	60.048	61.048	0.078888								0	0	0	0.031989	1	6876	6876		116.9	48.419	1				56506	5711	39450	39516	61993	61993					0.09130022231261137
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	OPSCC_39_ClassI_Rep-3	3	518.8109741210938	2	518.811116	1035.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.544	1	60.623	60.123	61.123	0.078888								0	0	0	0.03995	1	6888	6888		113.41	36.565	1				56507	5711	39450	39516	61994	61994					0.09130022231261137
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MSMS	OPSCC_39_ClassI_Rep-3	3	518.8110961914062	2	518.811116	1035.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.617	1	60.696	60.196	61.196	0.078888								0	0	0	0.1093	1	6900	6900		90.37	24.567	1				56508	5711	39450	39516	61995	61995					0.09130022231261137
NVRRDPSI	8	Unmodified	_NVRRDPSI_					0	0	0		ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.743408203125	2	478.76724	955.519927	-0.65452	-0.00031336	-2.0736	-0.00099275	-2.7281	-0.0013061	478.76624647591524	29.998	0.28208	29.998	29.855	30.137	0					10	6	2	0	0	0	0.027866	1	1907	1907		96.19	13.95	1	22941			56509	2160	39451	39517	61996	61996					0.04038821360506972
NVSILAEDL	9	Unmodified	_NVSILAEDL_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79718017578125	2	487.263665	972.512776	-0.10091	-4.917E-05	0.23609	0.00011504	0.13518	6.5867E-05	487.2635511433569	75.832	0.62969	75.844	75.575	76.205	0.011635					27	16	2	0	0	0	0.024374	1	9212	9212		58.782	25.97	1	175030			56510	1399	39452	39518	61997	61997					0.025420439694244124
NVSLKLAPPA	10	Unmodified	_NVSLKLAPPA_					0	0	0			REV__ENST00000478143.2_1_6:37617732-37622777:-|nuORF	REV__ENST00000478143.2_1_6:37617732-37622777:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.2728576660156	2	505.305667	1008.59678	0.54978	0.00027781	0.8679	0.00043855	1.4177	0.00071636	505.30528709655414	70.485	0.86863	70.485	70.355	71.223	0					25	20	2	0	0	0	0.03519	1	8543	8543		39.253	3.6345	1	208600	+		56511	21970	39453	39519	61998	61998					0.09282619856969632
NVSQVFSH	8	Unmodified	_NVSQVFSH_					0	0	0			REV__nc|ENSG840|P61565|ERVK-21_env	REV__nc|ENSG840|P61565|ERVK-21_env	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.26654052734375	2	459.227417	916.44028	-1.1694	-0.000537	-2.8305	-0.0012999	-3.9999	-0.0018369	459.2260481788974	28.569	0.87441	28.324	27.921	28.796	-0.24524					29	20	2	0	0	0	0.027866	1	1693	1693		21.96	4.5949	1	133470	+		56512	37251	39454	39520	61999	61999					-0.021282453134631396
NVSTRMRDL	9	Unmodified	_NVSTRMRDL_					0	0	0			REV__nc|ENSG00000110436|P43004-3|SLC1A2	REV__nc|ENSG00000110436|P43004-3|SLC1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.8113403320312	2	546.28494	1090.55533	-1.5111	-0.00082549	1.1062	0.0006043	-0.40489	-0.00022119	546.2855139986781	91.549	0.51875	91.549	91.341	91.86	0					29	11	3	0	0	0	0.024319	1	11582	11582		56.721	13.857	1	316710	+		56513	21858	39455	39521	62000	62000					0.013671158260194716
NVSVVHTN	8	Unmodified	_NVSVVHTN_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2511901855469	2	435.227417	868.44028	0.45721	0.00019899	0.90534	0.00039403	1.3626	0.00059302	435.22546062471554	78.433	0.34261	78.278	78.128	78.47	-0.15591					11	7	2	0	0	0	0.027866	1	9361	9361		29.17	0	1	43623			56514	8962	39456	39522	62001	62001					0.0007975468653285134
NVSVYNCLD	9	Unmodified	_NVSVYNCLD_					0	0	0			REV__ENSG00000116745|ENST00000262340|RPE65	REV__ENSG00000116745|ENST00000262340|RPE65	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3032836914062	2	513.731674	1025.4488	-0.59632	-0.00030635	-3.0371	-0.0015602	-3.6334	-0.0018666	513.7300745042533	37.019	0.90965	36.799	36.243	37.152	-0.2195					39	22	3	0	0	0	0.0242	1	2987	2987		60.118	5.3419	1	834810	+		56515	22299	39457	39523	62002	62002					-0.0629105945918127
NVTALTHRPN	10	Unmodified	_NVTALTHRPN_					0	0	0		SIGLEC9|p.I148N|1|0.42|ENSG00000129450|chr19:51125618-51125618|T/A|missense_variant;ENSG00000129450|ENST00000250360|SIGLEC9;ENSG00000168995|ENST00000317643|SIGLEC7;nc|ENSG00000129450|Q9Y336-2|SIGLEC9	SIGLEC9|p.I148N|1|0.42|ENSG00000129450|chr19:51125618-51125618|T/A|missense_variant	SIGLEC9|p.I148N|1|0.42|ENSG00000129450|chr19:51125618-51125618|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2791137695312	2	561.804354	1121.59415	0.26727	0.00015015	3.0675	0.0017233	3.3348	0.0018735	562.3070332641806	85.4	0.2132	85.263	85.113	85.326	-0.13753					7	4	2	0	0	0	0.03519	1	10344	10344		46.457	5.6786	1	52746			56516	4347	39458	39524	62003	62003					0.038221644520263
NVTFHEKT	8	Unmodified	_NVTFHEKT_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2507019042969	2	488.248349	974.482145	-0.32102	-0.00015674	2.4854	0.0012135	2.1644	0.0010568	488.24902931903733	33.629	0.95044	33.636	33.321	34.272	0.0066223					42	24	2	0	0	0	0.027866	1	2380	2380		27.882	6.9353	1	94576			56517	9453	39459	39525	62004	62004					-0.006116896249409365
NVTIHHLL	8	Unmodified	_NVTIHHLL_					0	0	0			REV__ENST00000443950.6_1_10:43881724-43881811:-|nuORF	REV__ENST00000443950.6_1_10:43881724-43881811:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7755432128906	2	473.777077	945.5396	-0.18499	-8.7646E-05	-2.0182	-0.00095616	-2.2032	-0.0010438	473.77631945781604	98.654	0.83246	98.488	98.2	99.033	-0.16532					24	18	2	0	0	0	0.71833	1	12205	12205		65.803	11.027	1	221020	+		56518	32583	39460	39526	62005	62005					0.06465197371289833
NVTIKKRL	8	Unmodified	_NVTIKKRL_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3216552734375	2	486.321651	970.62875	-1.0202	-0.00049612	0.50156	0.00024392	-0.5186	-0.0002522	486.32170709094424	21.257	0.92931	21.044	20.723	21.652	-0.2128					35	18	4	0	0	0	1.0009	1	629	629		37.159	1.5408	1	403990	+		56519	23527	39461	39527	62006	62006					0.14226032330805083
NVTKKIFLV	9	Unmodified	_NVTKKIFLV_					0	0	0		nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE;nc|ENSG00000179397|Q5SY80-3|CATSPERE;ENST00000473875.5_1_1:244724068-244773670:+|nuORF	nc|ENSG00000179397|Q5SY80-2|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.3394165039062	2	531.33951	1060.66447	0.44594	0.00023694	-0.59479	-0.00031604	-0.14886	-7.9093E-05	531.3390484064371	59.133	0.91901	58.891	58.583	59.502	-0.24166					51	22	3	0	0	0	0.56934	1	6511	6511		54.776	1.8396	1	2960400			56520	8895	39462	39528	62007	62007					0.13656069787793967
NVTKLINR	8	Unmodified	_NVTKLINR_					0	0	0			REV__ENSG00000204478|ENST00000602960|PRAMEF20	REV__ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2845153808594	2	479.295633	956.576714	0.30239	0.00014494	0.72878	0.0003493	1.0312	0.00049424	479.2954591402101	76.293	0.19873	76.305	76.166	76.365	0.011635					5	4	2	0	0	0	0.027866	1	9307	9307		17.365	5.8539	1	87592	+		56521	28607	39463	39529	62008	62008					0.09668868917037798
NVTKVKFNI	9	Unmodified	_NVTKVKFNI_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8170166015625	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.4752	2	10973	10947;10973		60.972	3.6781	1	3781500	+		56522	24867	39464	39530	62009;62010	62010					0.09498308748334239
NVTLANKF	8	Unmodified	_NVTLANKF_					0	0	0		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.3023376464844	2	453.75581	905.497067	-1.8139	-0.00082309	-1.001	-0.00045421	-2.815	-0.0012773	453.7569096263182	60.259	0.18682	60.337	60.242	60.429	0.078884					6	4	2	0	0	0	0.027866	1	6849	6849		37.159	0	1	43127			56523	7216	39465	39531	62011	62011					0.04053802243049631
NVTLVTGF	8	Unmodified	_NVTLVTGF_					0	0	0		ENSG00000241128|ENST00000366485|OR14A2	ENSG00000241128|ENST00000366485|OR14A2	ENSG00000241128|ENST00000366485|OR14A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7752380371094	2	425.737086	849.459619	-0.74782	-0.00031837	1.0825	0.00046087	0.33469	0.00014249	425.7371103589863	43.076	0.18427	43.076	43.002	43.186	0					6	4	2	0	0	0	0.027866	1	4021	4021		31.955	13.63	1	29574			56524	10780	39466	39532	62012	62012					0.028867109774296296
NVTNFSDI	8	Unmodified	_NVTNFSDI_					0	0	0		ENST00000474037.5_1_19:53885824-53886199:+|nuORF	ENST00000474037.5_1_19:53885824-53886199:+|nuORF	ENST00000474037.5_1_19:53885824-53886199:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.88824462890625	2	455.219257	908.423961	0.031641	1.4403E-05	3.9285	0.0017883	3.9601	0.0018027	455.2208087741091	37.534	0.93603	37.567	36.918	37.854	0.032269					31	24	2	0	0	0	0.027866	1	3030	3030		30.504	6.3009	1	88138			56525	15022	39467	39533	62013	62013					-0.03391371270220134
NVTPTVTPK	9	Unmodified	_NVTPTVTPK_					0	0	0			REV__nc|ENSG00000138592|P40818-2|USP8;REV__USP8-MYEF2|1|fusion	REV__USP8-MYEF2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.29095458984375	2	478.7742	955.533846	-0.070161	-3.3591E-05	-0.11438	-5.4761E-05	-0.18454	-8.8352E-05	478.77406433406975	46.63	0.9327	46.681	46.203	47.136	0.051395					43	25	3	0	0	0	0.024456	1	4627	4627		21.686	4.9684	1	1776900	+		56526	23863;37772	39468	39534	62014	62014					0.0543005406894963
NVVDQRLQP	9	Unmodified	_NVVDQRLQP_					0	0	0			REV__ENSG00000105063|ENST00000412770|PPP6R1	REV__ENSG00000105063|ENST00000412770|PPP6R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2464599609375	2	534.793455	1067.57236	-0.53846	-0.00028797	-2.8128	-0.0015043	-3.3512	-0.0017922	534.7914307761191	34.343	0.899	34.338	33.908	34.807	-0.0045624					69	22	5	0	0	0	0.023837	1	2559	2559		37.812	0	1	1172200	+		56527	21491	39469	39535	62015	62015					0.04127359703466027
NVVDQRLQP	9	Unmodified	_NVVDQRLQP_					0	0	0			REV__ENSG00000105063|ENST00000412770|PPP6R1	REV__ENSG00000105063|ENST00000412770|PPP6R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2470703125	2	534.793455	1067.57236	-1.3373	-0.00071515	-1.8122	-0.00096915	-3.1494	-0.0016843	534.7919055655371	34.384	1.0989	34.434	33.884	34.983	0.050255					85	27	6	0	0	0	0.024288	1	2507	2507		62.107	14.45	1	1132200	+		56528	21491	39469	39535	62016	62016					0.04127359703466027
NVVDSFFF	8	Unmodified	_NVVDSFFF_					0	0	0		OR4K5|p.C179F|1|0.18|ENSG00000176281|chr14:19921142-19921142|G/T|missense_variant	OR4K5|p.C179F|1|0.18|ENSG00000176281|chr14:19921142-19921142|G/T|missense_variant	OR4K5|p.C179F|1|0.18|ENSG00000176281|chr14:19921142-19921142|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2585754394531	2	487.734543	973.454533	0.1306	6.3698E-05	-4.1494	-0.0020238	-4.0188	-0.0019601	487.7323689128373	51.14	0.76132	51.14	50.74	51.501	0					47	20	3	0	0	0	0.027866	1	5432	5432		45.952	31.815	1	361820			56529	18917	39470	39536	62017	62017					-0.03325592885187234
NVVITTLKV	9	Unmodified	_NVVITTLKV_					0	0	0		ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.78466796875	2	493.815867	985.617182	-0.046929	-2.3174E-05	-1.4159	-0.00069919	-1.4628	-0.00072236	493.8149362389828	56.774	0.39531	56.774	56.608	57.003	0					20	11	3	0	0	0	0.022832	1	6344	6344		71.877	22.436	1	271980			56530	1057	39471	39537	62018	62018					0.12379790516808953
NVVITTLKV	9	Unmodified	_NVVITTLKV_					0	0	0		ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	ENST00000562836.5_1_16:68797408-68867399:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.78277587890625	2	493.815867	985.617182	-0.17418	-8.6015E-05	-2.1118	-0.0010429	-2.286	-0.0011289	493.8148739114916	56.99	0.51565	56.825	56.606	57.122	-0.16431					20	14	2	0	0	0	0.023837	1	6321	6321		54.776	0	1	277960			56531	1057	39471	39537	62019	62019					0.12379790516808953
NVVNKKTY	8	Unmodified	_NVVNKKTY_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000487062.1_1_1:38423860-38425872:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.77099609375	2	483.274367	964.53418	0.36912	0.00017839	-1.6684	-0.00080629	-1.2993	-0.00062791	483.27383943897405	95.814	0.78007	95.677	95.156	95.936	-0.13689					31	17	3	0	0	0	0.027866	1	11835	11835		18.324	4.1873	1	331230			56532	9229	39472	39538	62020	62020					0.05049473788812975
NVVSAARRKVL	11	Unmodified	_NVVSAARRKVL_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9227294921875	3	404.922689	1211.74624	-0.22601	-9.1516E-05	-0.11784	-4.7715E-05	-0.34385	-0.00013923	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	1.0281	1	1433	1433		30.569	1.9921	1	42722000			56533	8273	39473	39539	62021	62021					0.14883565199602344
NVWGVLWR	8	Unmodified	_NVWGVLWR_					0	0	0		ENST00000526001.1_1_1:110458315-110465049:+|nuORF	ENST00000526001.1_1_1:110458315-110465049:+|nuORF	ENST00000526001.1_1_1:110458315-110465049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7980346679688	2	515.285069	1028.55558	-1.1891	-0.0006127	-3.6889	-0.0019008	-4.8779	-0.0025135	515.2829595258903	35.897	1.028	35.897	35.306	36.334	0					39	27	2	0	0	0	0.027866	1	2727	2727		19.36	0	1	244110			56534	16107	39474	39540	62022	62022					0.04244903608173445
NVYIAMVPE	9	Unmodified	_NVYIAMVPE_					0	0	0			REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2	REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2730712890625	2	518.26261	1034.51067	-0.040977	-2.1237E-05	-2.3626	-0.0012244	-2.4036	-0.0012457	518.2586901459046	71.073	0.78856	70.801	70.528	71.317	-0.27184					31	17	3	0	0	0	0.024523	1	8284	8284		10.265	0	1	246250	+		56535	28482	39475	39541	62023	62023					-0.0052070804001687065
NVYSNSNPQ	9	Unmodified	_NVYSNSNPQ_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.84429931640625	2	511.73052	1021.44649	0.056634	2.8981E-05	1.4638	0.00074906	1.5204	0.00077804	511.7314438341325	75.762	0.1842	75.774	75.717	75.901	0.011642					6	4	2	0	0	0	0.024466	1	9252	9252		24.519	4.5224	1	230230	+		56536	20748	39476	39542	62024	62024					-0.06337771872620124
NWEPRVEQRR	10	Unmodified	_NWEPRVEQRR_					0	0	0			REV__ENST00000330292.4_17:80207349-80207784:+|nuORF	REV__ENST00000330292.4_17:80207349-80207784:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.24151611328125	3	457.24097	1368.70108	0.10117	4.626E-05	1.7279	0.00079009	1.8291	0.00083635	457.2416903802945	71.606	0.81465	71.344	70.824	71.638	-0.26199					52	19	4	0	0	0	1.126	1	8367	8367		24.232	0.85391	1	1490700	+		56537	30455	39477	39543	62025	62025					0.031477146663974054
NWIEGEEW	8	Unmodified	_NWIEGEEW_					0	0	0		ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.8115234375	2	531.729989	1061.44543	-1.3135	-0.00069843	-1.8184	-0.00096688	-3.1319	-0.0016653	532.2309554570593	61.455	0.24952	61.278	61.163	61.413	-0.17655					6	5	2	0	0	0	0.027866	1	6890	6890		47.916	29.654	1	46859			56538	10713	39478	39544	62026	62026					-0.08283986241508501
NWLIKNVI	8	Unmodified	_NWLIKNVI_					0	0	0		nc|ENSG00000167130|Q86YN1-2|DOLPP1;ENSG00000167130|ENST00000372546|DOLPP1	nc|ENSG00000167130|Q86YN1-2|DOLPP1	nc|ENSG00000167130|Q86YN1-2|DOLPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	500.302927	998.591301	0.99374	0.00049717	1.1687	0.00058469	2.1624	0.0010819	500.80465730354445	59.912	1.3243	59.912	59.559	60.884	0					100	34	5	0	0	0	0.91239	1	6854	6854		50.025	2.3672	1	23828000			56539	7653	39479	39545	62027	62027					0.09194941065175044
NWNEFNDLY	9	Unmodified	_NWNEFNDLY_					0	0	0			REV__ENSG00000154309|ENST00000675850|DISP1	REV__ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	607.8024291992188	2	607.759278	1213.504	-1.2108	-0.00073589	3.1204	0.0018965	1.9096	0.0011606	608.2631353822062	61.188	0.28688	61.012	60.793	61.08	-0.1761					9	6	2	0	0	0	0.024462	1	6817	6817		23.523	0	1	233830	+		56540	24954	39480	39546	62028	62028					-0.0942092966704422
NWPQHLLFA	9	Unmodified	_NWPQHLLFA_					0	0	0			REV__ENSG00000120008|ENST00000263461|WDR11	REV__ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.7334594726562	2	563.295633	1124.57671	-0.10813	-6.0911E-05	1.3265	0.00074722	1.2184	0.00068631	563.2963204162656	78.524	0.3413	78.368	78.085	78.427	-0.15591					12	7	2	0	0	0	0.024535	1	9364	9364		25.45	0	1	143320	+		56541	22507	39481	39547	62029	62029					0.019408689170404614
NWRFVELL	8	Unmodified	_NWRFVELL_					0	0	0		nc|ENSG00000078725|O60477-2|BRINP1;BRINP1|p.E573Rfs*90|1|0.44|ENSG00000078725|chr9:119167653-119167653|C/-|frameshift_variant;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-2|BRINP1	nc|ENSG00000078725|O60477-2|BRINP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7991943359375	2	538.798009	1075.58147	-0.72801	-0.00039225	2.245	0.0012096	1.517	0.00081734	538.7989850395178	92.63	1.4752	92.489	91.792	93.267	-0.14131					75	34	3	0	0	0	0.6248	1	11386	11386		73.975	5.1879	1	348430			56542	190	39482	39548	62030	62030					0.046697530598066805
NWRFVELL	8	Unmodified	_NWRFVELL_					0	0	0		nc|ENSG00000078725|O60477-2|BRINP1;BRINP1|p.E573Rfs*90|1|0.44|ENSG00000078725|chr9:119167653-119167653|C/-|frameshift_variant;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-2|BRINP1	nc|ENSG00000078725|O60477-2|BRINP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.798009	1075.58147	-1.9179	-0.0010334	3.5953	0.0019371	1.6774	0.00090376	538.7996109789182	92.595	1.7754	92.452	91.53	93.306	-0.14356	-0.018908	0.001144	NaN	73.975	95	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379640			56543	190	39482	39548							0.046697530598066805
NWRFVELL	8	Unmodified	_NWRFVELL_					0	0	0		nc|ENSG00000078725|O60477-2|BRINP1;BRINP1|p.E573Rfs*90|1|0.44|ENSG00000078725|chr9:119167653-119167653|C/-|frameshift_variant;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-2|BRINP1	nc|ENSG00000078725|O60477-2|BRINP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	538.798009	1075.58147	-0.4215	-0.0002271	1.9597	0.0010559	1.5382	0.00082878	538.7987991522244	92.593	1.6921	92.471	91.674	93.366	-0.12242	0.00041031	-0.00061854	NaN	73.975	86	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435340			56544	190	39482	39548							0.046697530598066805
NWRSKLCT	8	Unmodified	_NWRSKLCT_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.787353515625	2	504.258194	1006.50183	-1.0946	-0.00055194	-3.5927	-0.0018116	-4.6872	-0.0023636	504.256202630303	37.618	0.57119	37.399	37.192	37.763	-0.2195					15	9	2	0	0	0	0.027866	1	3027	3027		60.972	4.2509	1	178810			56545	909	39483	39549	62031	62031					-0.0011563688583464682
NWRSKLCT	8	Unmodified	_NWRSKLCT_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.258194	1006.50183	-1.2915	-0.00065123	-2.0082	-0.0010127	-3.2997	-0.0016639	504.25633710338684	37.732	0.2069	37.65	37.57	37.777	-0.082516	0.12549	0.00076313	NaN	60.972	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41936			56546	909	39483	39549							-0.0011563688583464682
NWTTLPPP	8	Unmodified	_NWTTLPPP_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000502311.1_1_4:493115-495466:+|nuORF;nc|ENSG00000174227|Q5H8A4-4|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.750732421875	2	463.242535	924.470518	-0.247	-0.00011442	3.0999	0.001436	2.8529	0.0013216	463.2439279492833	42.244	0.71822	42.013	41.761	42.48	-0.23029					26	19	2	0	0	0	0.027866	1	3850	3850		44.531	9.3304	1	227680			56547	8453	39484	39550	62032	62032					0.005261133517251437
NWYKGERV	8	Unmodified	_NWYKGERV_					0	0	0		nc|ENSG00000007306|Q14002-2|CEACAM7;ENSG00000007306|ENST00000401731|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	nc|ENSG00000007306|Q14002-2|CEACAM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.268798828125	2	526.269616	1050.52468	-0.21026	-0.00011065	-1.0217	-0.00053768	-1.2319	-0.00064833	526.2689580473678	78.168	0.8279	78.184	77.863	78.69	0.015907					54	19	4	0	0	0	1.0516	1	9601	9601		29.15	1.2673	1	1729800			56548	814	39485	39551	62033	62033					0.001437055032738499
NYAKKNVEQN	10	Unmodified	_NYAKKNVEQN_					0	0	0		ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16;ENSG00000127804|ENST00000263092|METTL16	ENST00000571298.5_1_17:2367609-2378577:-|nuORF	ENST00000571298.5_1_17:2367609-2378577:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.2067565917969	3	403.207043	1206.5993	-0.31353	-0.00012642	0.35528	0.00014325	0.041742	1.6831E-05	403.2071815592804	35.012	1.2319	34.99	34.551	35.783	-0.021767					87	31	4	0	0	0	0.96822	1	2641	2641		49.536	3.5638	1	7338900			56549	4261	39486	39552	62034	62034					0.00426423524004349
NYDFCYDTL	9	Unmodified	_NYDFCYDTL_					0	0	0			REV__nc|ENSG00000119514|Q8IXK2-2|GALNT12	REV__nc|ENSG00000119514|Q8IXK2-2|GALNT12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.3084106445312	2	577.228965	1152.44338	0.19858	0.00011463	0.97983	0.00056559	1.1784	0.00068021	577.2295667959519	74.325	0.93266	74.142	73.918	74.851	-0.18279					27	21	2	0	0	0	0.024427	1	8792	8792		34.173	0	1	140760	+		56550	22461	39487	39553	62035	62035					-0.12674783041643423
NYFVNYTFK	9	Unmodified	_NYFVNYTFK_					0	0	0		KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant;KBTBD4|p.A367Lfs*17|1|0.06|ENSG00000123444|chr11:47573388-47573388|C/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.755615234375	2	598.292756	1194.57096	-0.38428	-0.00022991	-4.0139	-0.0024015	-4.3982	-0.0026314	598.2899902271696	59.179	0.76731	58.991	58.702	59.469	-0.18795					44	18	4	0	0	0	0.024539	1	6576	6576		35.618	5.3006	1	935150			56551	3978	39488	39554	62036	62036					-0.01854274385300414
NYFVNYTFK	9	Unmodified	_NYFVNYTFK_					0	0	0		KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant;KBTBD4|p.A367Lfs*17|1|0.06|ENSG00000123444|chr11:47573388-47573388|C/-|frameshift_variant;nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	KBTBD4|p.I194Tfs*15|1|0.27|ENSG00000123444|chr11:47577416-47577419|ATGA/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	598.292756	1194.57096	-0.24231	-0.00014497	-2.8481	-0.001704	-3.0904	-0.001849	598.2908270682238	58.978	0.48542	58.797	58.546	59.032	-0.18134	-0.11328	0.00065903	NaN	35.618	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	837680			56552	3978	39488	39554							-0.01854274385300414
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.32958984375	2	584.329673	1166.64479	-0.25703	-0.00015019	-0.12383	-7.2359E-05	-0.38087	-0.00022255	584.3294922604963	59.829	0.98411	59.829	59.598	60.582	0					73	26	4	0	0	0	0.014918	2	6869	6857;6869		162.25	43.277	1	4447200			56553	992	39489	39555	62037;62038	62038					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.3297119140625	2	584.329673	1166.64479	-1.3108	-0.00076594	0.9568	0.00055909	-0.354	-0.00020685	584.3301214270058	60.048	1.3481	59.848	59.538	60.886	-0.20016					87	35	4	0	0	0	0.015064	2	6853	6853;6866		190.52	65.924	1	4186600			56554	992	39489	39555	62039;62040	62039					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.3301391601562	2	584.329673	1166.64479	-0.010139	-5.9242E-06	-0.27839	-0.00016267	-0.28853	-0.00016859	584.3294417517752	59.686	0.93519	59.772	59.464	60.399	0.085682					74	23	4	0	0	0	0.015901	2	6767	6750;6767		157.33	38.586	1	3465600			56555	992	39489	39555	62041;62042	62042					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.329833984375	2	584.329673	1166.64479	0.41422	0.00024204	-1.134	-0.00066261	-0.71974	-0.00042057	584.329026372904	60.066	1.8575	59.869	59.575	61.432	-0.19742					119	46	5	0	0	0	0.01388	5	6673	6651;6661;6673;6685;6698		180.87	63.966	1	12868000			56556	992	39489	39555	62043;62044;62045;62046;62047	62045					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.3291625976562	2	584.329673	1166.64479	-0.49541	-0.00028948	-0.14643	-8.5563E-05	-0.64184	-0.00037505	584.329597630431	59.897	1.3923	59.721	59.401	60.793	-0.1761					101	35	5	0	0	0	0.020687	4	6646	6625;6635;6646;6660		148.99	37.573	1	14349000			56557	992	39489	39555	62048;62049;62050;62051	62050					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.3297729492188	2	584.329673	1166.64479	-0.78768	-0.00046027	0.16907	9.8793E-05	-0.61861	-0.00036147	584.3297843174113	60.098	1.5247	59.85	59.533	61.058	-0.24842					104	38	5	0	0	0	0.020687	4	6648	6637;6648;6660;6672		148.99	36.879	1	13803000			56558	992	39489	39555	62052;62053;62054;62055	62053					0.06813693777053231
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.82177734375	2	584.821681	1167.62881	-0.37311	-0.0002182	0.71499	0.00041814	0.34188	0.00019994	584.8220351273769	75.48	0.69345	75.208	74.849	75.542	-0.27266					48	16	4	0	0	0	0.050291	3	8909	8909;8918;8931		128.6	58.975	1	2639000			56559	2340	39490	39556	62056;62057;62058	62056					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.8215942382812	2	584.821681	1167.62881	-1.0607	-0.00062033	1.0968	0.00064141	0.036038	2.1076E-05	584.8224693918343	75.466	0.92185	75.207	74.863	75.784	-0.25866					68	22	5	0	0	0	0.012922	2	8923	8923;8935		172.25	79.053	1	2495400			56560	2340	39490	39556	62059;62060	62059					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.8218994140625	2	584.821681	1167.62881	-0.32618	-0.00019076	-0.066893	-3.912E-05	-0.39307	-0.00022988	584.821614800982	75.305	0.96446	75.13	74.732	75.696	-0.17548					61	23	4	0	0	0	0.031832	3	8889	8880;8889;8902		140.11	65.069	1	2408900			56561	2340	39490	39556	62061;62062;62063	62062					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	584.821681	1167.62881	-2.3061	-0.0013487	2.9113	0.0017026	0.60522	0.00035395	584.823393003634	75.309	0.85786	75.309	74.875	75.732	0	0.066816	0.0024785	NaN	172.25	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	913960			56562	2340	39490	39556							0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	584.821681	1167.62881	-1.4658	-0.00085724	1.7442	0.00102	0.27836	0.00016279	584.8226771700531	75.504	0.6557	75.259	74.997	75.653	-0.24455	0.01704	0.0011133	NaN	172.25	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	999980			56563	2340	39490	39556							0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	584.821681	1167.62881	0.71893	0.00042044	-0.87693	-0.00051285	-0.15801	-9.2407E-05	584.8211083545623	75.33	0.6588	75.341	75.092	75.751	0.010376	0.098294	-0.0019525	NaN	172.25	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	854990			56564	2340	39490	39556							0.05169987540148213
NYIGLLGGSA	10	Unmodified	_NYIGLLGGSA_					0	0	0			REV__nc|ENSG00000116005|Q9UHG3-2|PCYOX1	REV__nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.6463623046875	2	482.758549	963.502546	0.39975	0.00019298	-0.082881	-4.0012E-05	0.31687	0.00015297	482.75814121501435	47.707	0.99615	47.52	47.161	48.157	-0.18684					54	26	3	0	0	0	0.03519	1	4633	4633		32.812	10.853	1	663770	+		56565	22250	39491	39557	62064	62064					0.01933481034882334
NYIKTVSKV	9	Unmodified	_NYIKTVSKV_					0	0	0			REV__ENSG00000177156|ENST00000319006|TALDO1	REV__ENSG00000177156|ENST00000319006|TALDO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3214721679688	2	526.310949	1050.60735	0.75194	0.00039576	-1.4837	-0.00078091	-0.7318	-0.00038515	526.310111391658	19.648	0.29831	19.448	19.305	19.603	-0.2001					8	5	2	0	0	0	0.024523	1	457	457		37.159	8.0096	1	35251	+		56566	27086	39492	39558	62065	62065					0.08406602511422534
NYIKTVSKV	9	Unmodified	_NYIKTVSKV_					0	0	0			REV__ENSG00000177156|ENST00000319006|TALDO1	REV__ENSG00000177156|ENST00000319006|TALDO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.310949	1050.60735	0.25576	0.00013461	-2.3243	-0.0012233	-2.0685	-0.0010887	526.3096067753792	19.278	0.34453	19.278	19.07	19.414	0	-0.14025	-0.00030651	NaN	37.159	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24993	+		56567	27086	39492	39558							0.08406602511422534
NYIKTVSKV	9	Unmodified	_NYIKTVSKV_					0	0	0			REV__ENSG00000177156|ENST00000319006|TALDO1	REV__ENSG00000177156|ENST00000319006|TALDO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.310949	1050.60735	2.6592	0.0013996	-4.7269	-0.0024878	-2.0677	-0.0010883	526.3081230818341	19.482	0.44311	19.548	19.34	19.783	0.066195	0.12976	-0.0028356	NaN	37.159	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23805	+		56568	27086	39492	39558							0.08406602511422534
NYKALRKGL	9	Unmodified	_NYKALRKGL_					0	0	0			REV__ENST00000360909.7_1_14:59834168-59834267:+|nuORF	REV__ENST00000360909.7_1_14:59834168-59834267:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.80029296875	2	531.824558	1061.63456	-0.60106	-0.00031966	-2.6284	-0.0013978	-3.2294	-0.0017175	531.8234637008215	56.975	0.20089	56.811	56.675	56.876	-0.16431					8	5	2	0	0	0	0.024523	1	6361	6361		29.15	3.6994	1	48633	+		56569	30923	39493	39559	62066	62066					0.10621130842469029
NYKILDLIF	9	Unmodified	_NYKILDLIF_					0	0	0			REV__ENSG00000064313|ENST00000378164|TAF2	REV__ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.283935546875	2	569.828975	1137.6434	-0.25731	-0.00014662	-1.0818	-0.00061646	-1.3391	-0.00076308	569.8282387647306	81.134	0.6616	80.991	80.696	81.357	-0.14249					24	15	2	0	0	0	0.024447	1	9780	9780		49.442	8.6634	1	136720	+		56570	20283	39494	39560	62067	62067					0.08008059688290814
NYKLGKVIS	9	Unmodified	_NYKLGKVIS_					0	0	0			REV__nc|ENSG00000196405|Q9UI08-4|EVL	REV__nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.3061828613281	2	511.305667	1020.59678	-0.48698	-0.000249	0.31428	0.00016069	-0.17271	-8.8305E-05	511.3056890932278	66.193	0.7009	65.948	65.649	66.35	-0.24567					40	17	4	0	0	0	0.72875	1	7573	7573		44.117	1.7207	1	1294800	+		56571	28176	39495	39561	62068	62068					0.08730619856999056
NYLGSMLIKD	10	Unmodified	_NYLGSMLIKD_					0	0	0		ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	MSMS	OPSCC_40_ClassI_Rep-3	6	577.2998657226562	2	577.299724	1152.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.383	1	99.214	98.714	99.714	-0.16862								0	0	0	0.5321	1	12306	12306		66.429	4.3219	1				56572	1287	39496	39562	62069	62069					0.014706350514870792
NYLLQDKQI	9	Unmodified	_NYLLQDKQI_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.81103515625	2	567.811313	1133.60807	-0.73961	-0.00041996	-0.32741	-0.00018591	-1.067	-0.00060587	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.247	1	8339	8339		82.75	5.9763	1	14091000	+		56573	22193	39497	39563	62070	62070					0.04661397160475644
NYMRVSRR	8	Unmodified	_NYMRVSRR_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2855224609375	2	541.287817	1080.56108	-0.84008	-0.00045473	-4.0237	-0.002178	-4.8638	-0.0026327	541.2856013547815	22.616	1.1568	22.43	21.858	23.015	-0.18539					50	24	3	0	0	0	0.77775	1	821	821		60.972	4.5381	1	997860	+		56574	25082	39498	39564	62071	62071					0.024022591283483052
NYNKIKIPK	9	Unmodified	_NYNKIKIPK_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-4|USP48	REV__nc|ENSG00000090686|Q86UV5-4|USP48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.816650390625	2	559.340041	1116.66553	0.39479	0.00022082	2.1642	0.0012105	2.559	0.0014313	559.8438540220384	82.272	1.0723	82.051	81.362	82.434	-0.22015					37	24	3	0	0	0	0.024381	1	9904	9904		37.159	0	1	171340	+		56575	36504	39499	39565	62072	62072					0.11186284156701731
NYQVDSWE	8	Unmodified	_NYQVDSWE_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.820556640625	2	520.719621	1039.42469	-1.1625	-0.00060534	-2.5717	-0.0013391	-3.7342	-0.0019445	521.2191492292557	80.69	0.19919	80.714	80.614	80.814	0.023911					7	4	2	0	0	0	0.027866	1	9952	9952		47.916	3.7988	1	62973			56576	9491	39500	39566	62073	62073					-0.09344576621174383
NYREEFRYFIH	11	Unmodified	_NYREEFRYFIH_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.26953125	3	525.256397	1572.74736	-1.5034	-0.00078968	-2.8159	-0.001479	-4.3193	-0.0022687	525.5892010661752	35.627	0.38979	35.627	35.38	35.769	0					20	9	3	0	0	0	0.024896	1	2725	2725		6.3209	3.1096	1	125780			56577	9426	39501	39567	62074	62074					-0.016102652221434255
NYRELFLEI	9	Unmodified	_NYRELFLEI_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	598.81787109375	2	598.819138	1195.62372	0.20852	0.00012487	-0.20749	-0.00012425	0.0010382	6.2171E-07	598.8188434047898	74.151	1.2456	74.151	73.871	75.116	0					64	29	3	0	0	0	0.45795	2	9068	9068;9079		62.107	2.0861	1	1544800			56578	1386	39502	39568	62075;62076	62075					0.03373683677546069
NYRELFLEI	9	Unmodified	_NYRELFLEI_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	598.819138	1195.62372	-1.3413	-0.00080322	1.0212	0.00061153	-0.32011	-0.00019169	598.8195673752847	74.187	1.3247	74.197	73.924	75.249	0.0096588	0.080104	0.00082468	NaN	62.107	75	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1556600			56579	1386	39502	39568							0.03373683677546069
NYRELFLEI	9	Unmodified	_NYRELFLEI_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	598.819138	1195.62372	-0.32937	-0.00019723	0.67542	0.00040445	0.34605	0.00020722	598.8192638263472	74.396	0.67991	74.12	73.917	74.597	-0.27573	0.003527	0.00041052	NaN	62.107	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336120			56580	1386	39502	39568							0.03373683677546069
NYRELFLEI	9	Unmodified	_NYRELFLEI_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	598.819138	1195.62372	-0.26657	-0.00015963	0.37472	0.00022439	0.10815	6.4761E-05	598.8192128781128	74.346	0.43866	74.082	73.923	74.361	-0.26326	-0.034326	5.0399E-05	NaN	62.107	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491100			56581	1386	39502	39568							0.03373683677546069
NYRELFLEI	9	Unmodified	_NYRELFLEI_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	598.819138	1195.62372	0.18546	0.00011106	-0.18478	-0.00011065	0.00067609	4.0485E-07	598.818773721325	74.197	0.39629	74.014	73.827	74.224	-0.18279	-0.10281	-0.00061968	NaN	62.107	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177560			56582	1386	39502	39568							0.03373683677546069
NYRFFYAF	8	Unmodified	_NYRFFYAF_					0	0	0		ENSG00000204160|ENST00000374142|ZDHHC18;nc|ENSG00000204160|Q9NUE0-2|ZDHHC18;ZDHHC18|p.S243F|1|0.2|ENSG00000204160|chr1:26850382-26850382|C/T|missense_variant	ENSG00000204160|ENST00000374142|ZDHHC18	ENSG00000204160|ENST00000374142|ZDHHC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.3135375976562	2	564.269084	1126.52362	1.1412	0.00064394	-2.9823	-0.0016828	-1.8411	-0.0010389	564.2672587149975	59.844	0.68089	59.647	59.339	60.02	-0.19742					38	17	3	0	0	0	0.027866	1	6595	6595		35.201	0	1	1490500			56583	10306	39503	39569	62077	62077					-0.034585088656285734
NYSRIKVK	8	Unmodified	_NYSRIKVK_					0	0	0			REV__CNTN2|p.E785K|1|0.28|ENSG00000184144|chr1:205069983-205069983|G/A|missense_variant	REV__CNTN2|p.E785K|1|0.28|ENSG00000184144|chr1:205069983-205069983|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.32696533203125	2	504.303458	1006.59236	3.3809	0.001705	1.9844	0.0010008	5.3653	0.0027058	504.30484943960363	17.77	0.2946	17.77	17.598	17.892	0					7	5	2	0	0	0	0.027866	1	215	215		73.975	5.1879	1	7326.8	+		56584	19506	39504	39570	62078	62078					0.08933155434090168
NYSRTLTIQ	9	Unmodified	_NYSRTLTIQ_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8;REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2916870117188	2	548.293288	1094.57202	0.021529	1.1804E-05	-3.7147	-0.0020367	-3.6931	-0.0020249	548.291168063182	72.455	1.0509	72.465	72.094	73.145	0.0097733					55	25	3	0	0	0	0.35646	1	8750	8750		68.787	7.8149	1	8630200	+		56585	20082;22782	39505	39571	62079	62079					0.02851939983634111
NYTLIAKNPL	10	Unmodified	_NYTLIAKNPL_					0	0	0		nc|ENSG00000140538|Q16288-2|NTRK3;nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-3|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ENSG00000140538|ENST00000629765|NTRK3;ENST00000559764.2_1_15:88675272-88679265:-|nuORF	nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2464599609375	2	573.829506	1145.64446	-0.24238	-0.00013908	0.87295	0.00050092	0.63057	0.00036184	573.8299012374955	73.872	0.35698	73.608	73.368	73.725	-0.26479					15	8	2	0	0	0	0.03519	1	8679	8679		72.879	27.857	1	403450			56586	5423	39506	39572	62080	62080					0.07746274057194569
NYTNTPPVID	10	Unmodified	_NYTNTPPVID_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.276611328125	2	567.277303	1132.54005	-0.54113	-0.00030697	-0.78384	-0.00044466	-1.325	-0.00075163	567.2768253147311	82.612	1.3397	82.471	81.999	83.339	-0.14014					50	30	2	0	0	0	0.91678	1	9951	9951		52.937	0	1	633310			56587	751	39507	39573	62081	62081					-0.020914724902013404
NYTVYVVNI	9	Unmodified	_NYTVYVVNI_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.7298583984375	2	542.787307	1083.56006	-1.6996	-0.00092253	1.8425	0.0010001	0.14286	7.7542E-05	542.7879433162816	51.759	0.62807	51.489	51.203	51.831	-0.26903					43	16	4	0	0	0	0.024523	1	5353	5353		29.15	6.1071	1	1375200			56588	3212	39508	39574	62082	62082					0.02162323240418118
NYVEFTRIL	9	Unmodified	_NYVEFTRIL_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	nc|ENSG00000101335|P24844-2|MYL9	nc|ENSG00000101335|P24844-2|MYL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.30615234375	2	577.813856	1153.61316	-0.40212	-0.00023235	-0.66499	-0.00038424	-1.0671	-0.00061659	577.8138589846908	71.159	0.54623	71.159	70.868	71.415	0					26	13	4	0	0	0	0.024283	1	8640	8640		75.043	35.79	1	2105800			56589	2311	39509	39575	62083	62083					0.04249701023104535
NYVEFTRIL	9	Unmodified	_NYVEFTRIL_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	nc|ENSG00000101335|P24844-2|MYL9	nc|ENSG00000101335|P24844-2|MYL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.306396484375	2	577.813856	1153.61316	-0.20103	-0.00011616	-0.83115	-0.00048025	-1.0322	-0.00059641	577.8137665720928	71.262	0.56813	71.272	70.976	71.544	0.010735					29	14	4	0	0	0	0.024253	1	8573	8573		80.455	46.939	1	1966800			56590	2311	39509	39575	62084	62084					0.04249701023104535
NYVEFTRIL	9	Unmodified	_NYVEFTRIL_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	nc|ENSG00000101335|P24844-2|MYL9	nc|ENSG00000101335|P24844-2|MYL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.814453125	2	577.813856	1153.61316	0.15829	9.1462E-05	-0.40359	-0.0002332	-0.24529	-0.00014173	577.8135332111121	71.448	0.64032	71.173	70.833	71.473	-0.27509					41	14	4	0	0	0	0.079716	2	8334	8334;8345		117.81	66.476	1	1466600			56591	2311	39509	39575	62085;62086	62085					0.04249701023104535
NYVEFTRIL	9	Unmodified	_NYVEFTRIL_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	nc|ENSG00000101335|P24844-2|MYL9	nc|ENSG00000101335|P24844-2|MYL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.8137817382812	2	577.813856	1153.61316	-0.40953	-0.00023663	0.31057	0.00017945	-0.098961	-5.7181E-05	577.8139527724005	71.4	0.6179	71.138	70.824	71.441	-0.26199					41	14	4	0	0	0	0.11727	2	8341	8341;8354		106.68	53.332	1	2254300			56592	2311	39509	39575	62087;62088	62087					0.04249701023104535
NYVEFTRIL	9	Unmodified	_NYVEFTRIL_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	nc|ENSG00000101335|P24844-2|MYL9	nc|ENSG00000101335|P24844-2|MYL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.8135375976562	2	577.813856	1153.61316	0.36309	0.0002098	-0.90733	-0.00052427	-0.54425	-0.00031447	577.8134229539487	71.278	0.63557	71.072	70.746	71.382	-0.20613					35	14	3	0	0	0	0.09527	2	8316	8316;8329		112.11	32.673	1	1728400			56593	2311	39509	39575	62089;62090	62089					0.04249701023104535
NYVIKMNW	8	Unmodified	_NYVIKMNW_					0	0	0			REV__ENST00000515007.6_1_5:77784418-77784583:-|nuORF	REV__ENST00000515007.6_1_5:77784418-77784583:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2710571289062	2	534.27077	1066.52699	-0.3619	-0.00019335	0.38347	0.00020487	0.021566	1.1522E-05	534.2707868795944	61.902	0.71359	61.688	61.416	62.13	-0.21375					43	17	3	0	0	0	0.30538	1	6957	6957		110.34	22.641	1	1599400	+		56594	34186	39510	39576	62091	62091					-0.0036158208329197805
PAAAAGPQKP	10	Unmodified	_PAAAAGPQKP_					0	0	0			REV__ENSG00000064961|ENST00000333651|HMG20B	REV__ENSG00000064961|ENST00000333651|HMG20B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7817687988281	2	454.253434	906.492316	-0.45556	-0.00020694	1.6952	0.00077007	1.2397	0.00056313	454.25337932913175	44.473	0.57398	44.473	44.151	44.725	0					37	16	3	0	0	0	0.03519	1	4288	4288		35.618	0	1	315970	+		56595	20297	39511	39577	62092	62092					0.03532918100268034
PAAAAGPQKP	10	Unmodified	_PAAAAGPQKP_					0	0	0			REV__ENSG00000064961|ENST00000333651|HMG20B	REV__ENSG00000064961|ENST00000333651|HMG20B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7818603515625	2	454.253434	906.492316	-0.11108	-5.0458E-05	2.062	0.00093665	1.9509	0.0008862	454.25349591472525	44.525	0.50842	44.562	44.241	44.749	0.0369					28	14	3	0	0	0	0.03519	1	4223	4223		44.117	15.863	1	252080	+		56596	20297	39511	39577	62093	62093					0.03532918100268034
PAAAARRGP	9	Unmodified	_PAAAARRGP_					0	0	0			REV__ENST00000328381.9_2_17:29298258-29315050:+|nuORF	REV__ENST00000328381.9_2_17:29298258-29315050:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.7515563964844	2	433.751393	865.488233	0.50306	0.0002182	-0.21412	-9.2875E-05	0.28894	0.00012533	433.7512119293158	19.727	1.5901	19.727	18.972	20.562	0					82	32	4	0	0	0	0.64155	1	462	462		50.025	8.8162	1	1278400	+		56597	30432	39512	39578	62094	62094					0.050108733972251684
PAAACPYCPPN	11	Unmodified	_PAAACPYCPPN_					0	0	0		ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	ENSG00000179588|ENST00000319555|ZFPM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2402954101562	2	552.23607	1102.45759	-0.61246	-0.00033822	1.9825	0.0010948	1.37	0.00075656	552.2367761082862	83.117	0.25838	83.117	82.965	83.223	0					8	5	2	0	0	0	0.024743	1	10386	10386		20.947	0	1	78164			56598	8906	39513	39579	62095	62095					-0.08954409094349103
PAAALAAGGQP	11	Unmodified	_PAAALAAGGQP_					0	0	0			REV__ENST00000521689.5_1_8:98881135-98900426:+|nuORF	REV__ENST00000521689.5_1_8:98881135-98900426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2298889160156	2	462.250892	922.48723	-0.3625	-0.00016757	-0.86703	-0.00040079	-1.2295	-0.00056835	462.25036735303297	38.827	0.68368	38.827	38.639	39.323	0					35	18	2	0	0	0	0.024729	1	3353	3353		15.642	0	1	210430	+		56599	34322	39514	39580	62096	62096					0.02288614237670572
PAAALGKAL	9	Unmodified	_PAAALGKAL_					0	0	0		ENST00000512888.1_1_4:1165538-1166604:-|nuORF;ENSG00000159674|ENST00000290902|SPON2	ENST00000512888.1_1_4:1165538-1166604:-|nuORF	ENST00000512888.1_1_4:1165538-1166604:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7455139160156	2	406.255446	810.496338	1.4419	0.00058578	-1.0747	-0.00043661	0.36719	0.00014917	406.25495149148156	44.977	0.58707	45.02	44.756	45.344	0.043877					24	16	2	0	0	0	0.024386	1	4327	4327		25.45	0	1	152730			56600	6760	39515	39581	62097	62097					0.08351007593978466
PAAALGKAL	9	Unmodified	_PAAALGKAL_					0	0	0		ENST00000512888.1_1_4:1165538-1166604:-|nuORF;ENSG00000159674|ENST00000290902|SPON2	ENST00000512888.1_1_4:1165538-1166604:-|nuORF	ENST00000512888.1_1_4:1165538-1166604:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7451477050781	2	406.255446	810.496338	1.4652	0.00059524	1.1745	0.00047716	2.6397	0.0010724	406.25601918217353	45.817	0.58554	45.861	45.681	46.267	0.043877					24	16	2	0	0	0	0.024517	1	4396	4396		12.959	0	1	124050			56601	6760	39515	39581	62098	62098					0.08351007593978466
PAAALPRKS	9	Unmodified	_PAAALPRKS_					0	0	0		ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	ENSG00000146216|ENST00000259750|TTBK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7555236816406	2	455.777077	909.5396	0.36439	0.00016608	-0.15768	-7.1866E-05	0.20671	9.4214E-05	455.7767829524142	32.628	0.62033	32.435	32.118	32.738	-0.19261					23	14	2	0	0	0	0.024381	1	2245	2245		15.642	0	1	370730			56602	5863	39516	39582	62099	62099					0.08121197371269773
PAAANVRKP	9	Unmodified	_PAAANVRKP_					0	0	0		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ENST00000549455.1_1_12:111963110-112036838:-|nuORF;nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2301025390625	2	462.274701	922.534849	0.082711	3.8235E-05	-0.33154	-0.00015326	-0.24883	-0.00011503	462.27433957812417	39.365	0.37925	39.365	39.183	39.562	0					14	10	2	0	0	0	0.024535	1	3364	3364		18.324	0	1	76707			56603	10380	39517	39583	62100	62100					0.070483132285176
PAAAPAKPL	9	Unmodified	_PAAAPAKPL_					0	0	0		ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	418.5221862792969	2	418.255446	834.496338	-0.62256	-0.00026039	1.4311	0.00059855	0.80849	0.00033816	418.2559350843497	39.305	0.3913	39.206	39.054	39.446	-0.098755					15	10	2	0	0	0	0.024354	1	3365	3365		38.806	18.324	1	197510			56604	7271	39518	39584	62101	62101					0.0724700759398047
PAAAPAKPL	9	Unmodified	_PAAAPAKPL_					0	0	0		ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	418.255446	834.496338	0.32397	0.0001355	1.0719	0.00044831	1.3958	0.00058381	418.25543055549537	39.256	0.38291	39.256	39.076	39.459	0	-0.063085	-0.00023181	NaN	38.806	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205820			56605	7271	39518	39584							0.0724700759398047
PAAAPLRGLH	10	Unmodified	_PAAAPLRGLH_					0	0	0		ENST00000510462.5_1_17:48610105-48613378:+|nuORF;ENST00000268933.7_1_17:48610105-48613843:+|nuORF;ENST00000503690.5_1_17:48610105-48613454:+|nuORF	ENST00000510462.5_1_17:48610105-48613378:+|nuORF	ENST00000510462.5_1_17:48610105-48613378:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7974853515625	2	501.795801	1001.57705	-1.2026	-0.00060344	3.9048	0.0019594	2.7023	0.001356	501.7976510507207	38.787	0.92343	38.814	38.429	39.353	0.027275					64	24	5	0	0	0	1.1056	1	3223	3223		31.955	6.3808	1	5430000			56606	11631	39519	39585	62102	62102					0.07632288636898465
PAAARSSPI	9	Unmodified	_PAAARSSPI_					0	0	0			REV__ENSG00000171475|ENST00000323571|WIPF2	REV__ENSG00000171475|ENST00000323571|WIPF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2498779296875	2	435.245609	868.476666	-0.38512	-0.00016762	4.3913	0.0019113	4.0062	0.0017437	435.247343650344	29.183	0.75484	29.186	28.755	29.509	0.0031357					46	18	3	0	0	0	0.43973	1	1755	1755		63.306	1.1989	1	2661000	+		56607	26569	39520	39586	62103	62103					0.03716631583245089
PAAAVGGLVN	10	Unmodified	_PAAAVGGLVN_					0	0	0		ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7797546386719	2	434.747985	867.481417	0.1308	5.6864E-05	0.070956	3.0848E-05	0.20175	8.7712E-05	434.7478941429067	47.28	0.59282	47.28	46.967	47.56	0					36	16	3	0	0	0	0.03519	1	4688	4688		21.96	0	1	1090000			56608	15060	39521	39587	62104	62104					0.0423751572599258
PAACLLPPAL	10	Unmodified	_PAACLLPPAL_					0	0	0		ENST00000568636.5_1_16:718678-720341:+|nuORF;ENST00000602564.5_1_16:719540-721765:+|nuORF	ENST00000568636.5_1_16:718678-720341:+|nuORF	ENST00000568636.5_1_16:718678-720341:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2571105957031	2	483.278063	964.541574	1.1913	0.00057575	2.1299	0.0010293	3.3213	0.0016051	483.278848253013	36.99	0.83627	36.99	36.578	37.414	0					40	21	3	0	0	0	0.03519	1	2976	2976		26.796	0	1	656330			56609	16988	39522	39588	62105	62105					0.05788490064855978
PAADRLAEL	9	Unmodified	_PAADRLAEL_					0	0	0			REV__nc|ENSG00000197142|Q9ULC5-3|ACSL5	REV__nc|ENSG00000197142|Q9ULC5-3|ACSL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.26348876953125	2	478.263999	954.513445	-0.95012	-0.00045441	-0.1622	-7.7574E-05	-1.1123	-0.00053198	478.26382117450925	38.985	0.76754	39.009	38.688	39.455	0.023727					49	20	4	0	0	0	0.32811	1	3270	3270		71.877	10.906	1	6271100	+		56610	37057	39523	39589	62106	62106					0.03436883409131042
PAAGAGHPQP	10	Unmodified	_PAAGAGHPQP_					0	0	0		ENST00000270502.6_1_19:11039810-11040236:+|nuORF	ENST00000270502.6_1_19:11039810-11040236:+|nuORF	ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.74725341796875	2	451.727584	901.440614	-0.16274	-7.3513E-05	-0.41874	-0.00018916	-0.58148	-0.00026267	451.7275670024033	30.927	0.50503	30.939	30.709	31.214	0.011799					15	11	2	0	0	0	0.03519	1	2045	2045		57.811	31.015	1	52090			56611	11643	39524	39590	62107	62107					-0.014048255936245369
PAAGAGHPQP	10	Unmodified	_PAAGAGHPQP_					0	0	0		ENST00000270502.6_1_19:11039810-11040236:+|nuORF	ENST00000270502.6_1_19:11039810-11040236:+|nuORF	ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	451.727584	901.440614	-0.45571	-0.00020585	-0.18735	-8.463E-05	-0.64305	-0.00029048	451.7274715021719	30.58	0.49763	30.654	30.42	30.917	0.074314	-0.14242	0.00015094	NaN	23.042	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104720			56612	11643	39524	39590							-0.014048255936245369
PAAGNVIGR	9	Unmodified	_PAAGNVIGR_					0	0	0			REV__ENSG00000147416|ENST00000276390|ATP6V1B2	REV__ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7297668457031	2	427.745776	853.477	-0.064584	-2.7626E-05	-0.67564	-0.000289	-0.74022	-0.00031663	427.7452598396715	28.898	0.34028	28.748	28.572	28.912	-0.14952					13	7	2	0	0	0	0.024436	1	1686	1686		23.042	1.0826	1	53382	+		56613	24551	39525	39591	62108	62108					0.044400513030950606
PAAGPPARAR	10	Unmodified	_PAAGPPARAR_					0	0	0		ENST00000316286.13_1_7:148768550-148768973:-|nuORF	ENST00000316286.13_1_7:148768550-148768973:-|nuORF	ENST00000316286.13_1_7:148768550-148768973:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7603759765625	2	482.277775	962.540997	0.87656	0.00042274	2.1815	0.0010521	3.058	0.0014748	482.2788370850628	78.159	0.85802	77.967	77.522	78.38	-0.1921					27	20	2	0	0	0	0.03519	1	9576	9576		34.173	17.699	1	350600			56614	12146	39526	39592	62109	62109					0.058228314600341946
PAAGRFDT	8	Unmodified	_PAAGRFDT_					0	0	0		ENST00000402690.6_3_18:45423134-45457349:-|nuORF	ENST00000402690.6_3_18:45423134-45457349:-|nuORF	ENST00000402690.6_3_18:45423134-45457349:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.70849609375	2	417.70886	833.403166	1.0537	0.00044014	-0.92999	-0.00038846	0.12371	5.1675E-05	417.7080221269448	99.009	0.94334	98.884	98.328	99.272	-0.12459					41	23	3	0	0	0	1.0133	1	12287	12287		35.201	3.2459	1	140550			56615	13686	39527	39593	62110	62110					-0.02019916859251225
PAAGRPTAI	9	Unmodified	_PAAGRPTAI_					0	0	0			REV__ENST00000570299.5_1_17:44039703-44096001:+|nuORF	REV__ENST00000570299.5_1_17:44039703-44096001:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.248291015625	2	427.248152	852.481751	1.3397	0.00057238	-1.1624	-0.00049663	0.17731	7.5754E-05	427.2475369084682	22.879	0.78322	22.688	22.296	23.079	-0.19117					34	16	4	0	0	0	0.55828	1	838	838		55.504	2.1528	1	731720	+		56616	27890	39528	39594	62111	62111					0.049609354458425514
PAAGSVILLEN	11	Unmodified	_PAAGSVILLEN_					0	0	0		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2449951171875	2	542.305864	1082.59717	-0.26923	-0.000146	4.3542	0.0023613	4.085	0.0022153	542.3085306011814	89.581	0.71043	89.559	89.283	89.994	-0.021645					26	16	2	0	0	0	0.024749	1	11287	11287		35.152	4.6484	1	116970			56617	2385	39529	39595	62112	62112					0.05917994786182135
PAAGTAPGLL	10	Unmodified	_PAAGTAPGLL_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7798767089844	2	434.25036	866.486168	0.17166	7.4544E-05	0.71138	0.00030892	0.88304	0.00038346	434.25055303351934	42.807	0.68189	42.668	42.345	43.027	-0.13929					32	18	2	0	0	0	0.03519	1	3910	3910		21.96	1.4781	1	386470			56618	9697	39530	39596	62113	62113					0.04758399868762808
PAAGTAPGLL	10	Unmodified	_PAAGTAPGLL_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.25036	866.486168	0.50024	0.00021723	0.22267	9.6696E-05	0.72292	0.00031393	434.2503049971724	42.673	0.71835	42.699	42.393	43.111	0.026012					30	19	2	0	0	0	0.03519	1	3864	3864		29.15	4.6455	1	373610			56619	9697	39530	39596	62114	62114					0.04758399868762808
PAAHLARPGA	10	Unmodified	_PAAHLARPGA_					0	0	0			REV__ENST00000330333.10_1_21:42539880-42598206:+|nuORF	REV__ENST00000330333.10_1_21:42539880-42598206:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7895202636719	2	480.772326	959.530098	-0.37762	-0.00018155	-1.5238	-0.0007326	-1.9014	-0.00091416	480.77160131093973	33.409	1.026	33.208	32.73	33.756	-0.20019					52	25	3	0	0	0	0.03519	1	2447	2447		24.203	6.8378	1	955050	+		56620	30457	39531	39597	62115	62115					0.04871429085756063
PAAIIRLN	8	Unmodified	_PAAIIRLN_					0	0	0			REV__nc|nan|Q8N4C9-2|C17orf78	REV__nc|nan|Q8N4C9-2|C17orf78	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.7708435058594	2	434.27417	866.533787	1.1883	0.00051603	-1.8391	-0.00079868	-0.65085	-0.00028265	434.27331042137234	85.453	1.1623	85.453	84.751	85.913	0					49	27	3	0	0	0	0.027866	1	10716	10716		8.2313	0	1	579250	+		56621	29217	39532	39598	62116	62116					0.09518098859609836
PAAILMLI	8	Unmodified	_PAAILMLI_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8466491699219	2	421.264425	840.514297	-0.1483	-6.2473E-05	1.8856	0.00079433	1.7373	0.00073186	421.2662090098204	33.078	0.36916	32.847	32.627	32.997	-0.23107					11	8	2	0	0	0	0.027866	1	2338	2338		10.185	0	1	62415	+		56622	29496	39533	39599	62117	62117					0.0876600652450179
PAAKASAVRA	10	Unmodified	_PAAKASAVRA_					0	0	0		ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8092041015625	2	471.279983	940.545414	0.4112	0.00019379	-0.63476	-0.00029915	-0.22356	-0.00010536	471.27947820734335	41.115	1.0257	41.138	40.864	41.89	0.023006					47	28	3	0	0	0	0.03519	1	3577	3577		49.442	17.487	1	619570			56623	4063	39534	39600	62118	62118					0.0727629588294576
PAAKHEKP	8	Unmodified	_PAAKHEKP_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.248291015625	2	439.248152	876.481751	-0.48273	-0.00021204	0.22934	0.00010074	-0.25339	-0.0001113	439.2482080932581	33.297	2.3249	33.304	32.139	34.463	0.0066223					174	61	5	0	0	0	0.68164	2	2341	2332;2341		68.787	6.0627	1	11536000			56624	18322	39535	39601	62119;62120	62120					0.038569354458559246
PAAKQLTK	8	Unmodified	_PAAKQLTK_					0	0	0		ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.87042236328125	2	428.766178	855.517802	-0.09374	-4.0193E-05	-1.996	-0.00085581	-2.0897	-0.000896	428.7662446205885	36.984	0.44087	36.765	36.405	36.846	-0.2195					13	10	2	0	0	0	0.027866	1	2895	2895		57.811	11.859	1	46224			56625	3225	39536	39602	62121	62121					0.08426392622698131
PAALADPGQL	10	Unmodified	_PAALADPGQL_					0	0	0			REV__ENSG00000221900|ENST00000408890|POM121L12	REV__ENSG00000221900|ENST00000408890|POM121L12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7582092285156	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.85955	1	13145	13145		56.721	8.8055	1	4565500	+		56626	28837	39537	39603	62122	62122					0.024854810348642786
PAALADPGQL	10	Unmodified	_PAALADPGQL_					0	0	0			REV__ENSG00000221900|ENST00000408890|POM121L12	REV__ENSG00000221900|ENST00000408890|POM121L12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7579345703125	2	476.758549	951.502546	0.59757	0.0002849	-1.8144	-0.00086505	-1.2169	-0.00058015	476.7575883352349	103.57	1.7067	103.44	102.86	104.57	-0.12723					123	42	4	0	0	0	0.91051	1	12899	12899		53.351	12.573	1	2742400	+		56627	28837	39537	39603	62123	62123					0.024854810348642786
PAALCLRPRG	10	Unmodified	_PAALCLRPRG_					0	0	0			REV__ENST00000464108.5_1_9:130689570-130690941:-|nuORF	REV__ENST00000464108.5_1_9:130689570-130690941:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.3050537109375	2	527.302936	1052.59132	0.95797	0.00050514	2.7741	0.0014628	3.7321	0.001968	527.304365478722	98.029	1.3703	97.904	97.417	98.787	-0.12414					55	32	3	0	0	0	1.1259	1	12174	12174		24.203	0	1	608280	+		56628	31561	39538	39604	62124	62124					0.06712617793527897
PAALKDNFF	9	Unmodified	_PAALKDNFF_					0	0	0			REV__nc|ENSG00000125388|P32298-2|GRK4	REV__nc|ENSG00000125388|P32298-2|GRK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.3137817382812	2	511.768917	1021.52328	-0.2595	-0.0001328	1.1388	0.00058281	0.87931	0.00045	512.2719678552597	50.429	0.26579	50.51	50.31	50.576	0.08099					14	7	3	0	0	0	0.024477	1	5203	5203		20.947	0	1	215490	+		56629	22812	39539	39605	62125	62125					0.013380714145114325
PAALKLASI	9	Unmodified	_PAALKLASI_					0	0	0			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2552490234375	2	442.284203	882.553853	0.12699	5.6168E-05	4.3204	0.0019109	4.4474	0.001967	442.2853350005156	53.889	0.34488	53.889	53.799	54.144	0					12	9	2	0	0	0	0.024205	1	5842	5842		44.117	0	1	123220	+		56630	37579	39540	39606	62126	62126					0.10787849799555715
PAALPRPNPL	10	Unmodified	_PAALPRPNPL_					0	0	0			REV__ENST00000392329.6_1_2:191208285-191208582:+|nuORF	REV__ENST00000392329.6_1_2:191208285-191208582:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2769775390625	2	523.311284	1044.60801	-0.23864	-0.00012488	0.95189	0.00049814	0.71325	0.00037325	523.3116895151485	45.774	0.78617	45.817	45.409	46.196	0.04388					29	22	2	0	0	0	0.03519	1	4464	4464		38.806	9.6566	1	272960	+		56631	31600	39541	39607	62127	62127					0.08749441951113113
PAALRPLVL	9	Unmodified	_PAALRPLVL_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.96112060546875	2	475.313295	948.612037	0.97763	0.00046468	-1.0743	-0.00051064	-0.096698	-4.5962E-05	475.3126672388535	63.307	0.5755	63.307	63.126	63.701	0					26	15	2	0	0	0	0.024262	1	7443	7443		23.042	0	1	1102800			56632	6825	39542	39608	62128	62128					0.1356753144484628
PAALRPLVL	9	Unmodified	_PAALRPLVL_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.96142578125	2	475.313295	948.612037	0.55409	0.00026336	-0.81969	-0.00038961	-0.2656	-0.00012624	475.31282825804334	63.559	0.64659	63.307	63.048	63.695	-0.25141					30	17	2	0	0	0	0.024294	1	7448	7448		37.159	0	1	1140700			56633	6825	39542	39608	62129	62129					0.1356753144484628
PAALWAHAL	9	Unmodified	_PAALWAHAL_					0	0	0		ENST00000456170.5_1_1:44686783-44687191:-|nuORF	ENST00000456170.5_1_1:44686783-44687191:-|nuORF	ENST00000456170.5_1_1:44686783-44687191:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.96148681640625	2	475.266345	948.518136	0.56829	0.00027009	0.91456	0.00043466	1.4829	0.00070475	475.2669460754146	63.634	0.21768	63.383	63.3	63.518	-0.25141					7	5	2	0	0	0	0.024389	1	7435	7435		29.842	0	1	123150			56634	14595	39543	39609	62130	62130					0.04181812342562807
PAAPARPK	8	Unmodified	_PAAPARPK_					0	0	0		ENST00000494295.1_1_X:134477495-134477729:-|nuORF	ENST00000494295.1_1_X:134477495-134477729:-|nuORF	ENST00000494295.1_1_X:134477495-134477729:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.2353820800781	2	404.245412	806.476272	0.75369	0.00030468	-0.12647	-5.1126E-05	0.62722	0.00025355	404.2452109521487	23.558	0.49643	23.558	23.283	23.78	0					19	11	2	0	0	0	0.027866	1	967	967		8.8223	0.59103	1	63929			56635	15527	39544	39610	62131	62131					0.06529256654039273
PAAPARPK	8	Unmodified	_PAAPARPK_					0	0	0		ENST00000494295.1_1_X:134477495-134477729:-|nuORF	ENST00000494295.1_1_X:134477495-134477729:-|nuORF	ENST00000494295.1_1_X:134477495-134477729:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.245412	806.476272	1.7122	0.00069216	-0.8217	-0.00033217	0.89052	0.00035999	404.2450461323766	23.401	0.86367	23.477	23.272	24.136	0.076239	0.0020782	-0.00062599	NaN	12.959	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76287			56636	15527	39544	39610							0.06529256654039273
PAAPKPVLG	9	Unmodified	_PAAPKPVLG_					0	0	0			REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.748291015625	2	425.263271	848.511988	-0.47084	-0.00020023	-0.76717	-0.00032625	-1.238	-0.00052648	425.2631591564489	26.451	0.37917	26.215	26.037	26.416	-0.23603					15	10	2	0	0	0	0.024517	1	1345	1345		19.36	0	1	107130	+		56637	20262	39545	39611	62132	62132					0.08167294111058254
PAAPLPRW	8	Unmodified	_PAAPLPRW_					0	0	0		ENSG00000134243|ENST00000256637|SORT1	ENSG00000134243|ENST00000256637|SORT1	ENSG00000134243|ENST00000256637|SORT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7817687988281	2	454.261062	906.507572	-0.14531	-6.601E-05	0.32256	0.00014653	0.17725	8.0516E-05	454.26089184773645	44.858	0.62112	44.858	44.657	45.278	0					26	17	2	0	0	0	0.027866	1	4288	4288		20.482	0	1	496900			56638	4768	39546	39612	62133	62133					0.05057829688132642
PAAPLPRW	8	Unmodified	_PAAPLPRW_					0	0	0		ENSG00000134243|ENST00000256637|SORT1	ENSG00000134243|ENST00000256637|SORT1	ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	454.261062	906.507572	-0.0065776	-2.988E-06	0.41663	0.00018926	0.41005	0.00018627	454.26091580210675	44.937	0.7211	44.981	44.756	45.478	0.043877	0.066704	-8.7538E-05	NaN	13.775	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720330			56639	4768	39546	39612							0.05057829688132642
PAAPLREEAE	10	Unmodified	_PAAPLREEAE_					0	0	0			REV__ENSG00000141314|ENST00000269051|RHBDL3	REV__ENSG00000141314|ENST00000269051|RHBDL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.32470703125	2	541.77747	1081.54039	-0.83686	-0.00045339	1.0691	0.00057921	0.23224	0.00012582	541.7778874531353	45.436	0.30156	45.436	45.246	45.548	0					13	8	2	0	0	0	0.03519	1	4420	4420		79.451	9.8234	1	154770	+		56640	24073	39547	39613	62134	62134					0.0028794722966267727
PAAPNPAATSA	11	Unmodified	_PAAPNPAATSA_					0	0	0		nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;nc|ENSG00000164877|Q8IY33-5|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2469482421875	2	484.245806	966.47706	-0.79345	-0.00038423	0.45014	0.00021798	-0.34332	-0.00016625	484.24583454767793	40.599	0.8429	40.622	40.162	41.005	0.023006					32	23	2	0	0	0	0.024741	1	3457	3457		30.318	0	1	324490			56641	7331	39548	39614	62135	62135					-0.0075199348757450934
PAAPRKAR	8	Unmodified	_PAAPRKAR_					0	0	0			REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F	REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2549743652344	2	433.769586	865.524619	0.55684	0.00024154	-4.4185	-0.0019166	-3.8616	-0.0016751	433.76795251738497	102.85	0.22374	102.85	102.68	102.9	-0.0046005					9	5	3	0	0	0	0.027866	1	13085	13085		8.8223	0.59103	1	400090	+		56642	23376	39549	39615	62136	62136					0.08647750293937406
PAAPRRVL	8	Unmodified	_PAAPRRVL_					0	0	0			REV__ENST00000591369.5_1_17:76419989-76422610:-|nuORF	REV__ENST00000591369.5_1_17:76419989-76422610:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2278137207031	2	440.279786	878.54502	-0.47323	-0.00020835	0.13654	6.0115E-05	-0.33669	-0.00014824	440.2798293319053	34.582	0.68536	34.633	34.441	35.127	0.050255					21	17	2	0	0	0	0.027866	1	2573	2573		28.254	14.479	1	89640	+		56643	35722	39550	39616	62137	62137					0.10088920953751312
PAAPRVSPQ	9	Unmodified	_PAAPRVSPQ_					0	0	0			REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|22|2|sense	REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|22|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7563781738281	2	461.758884	921.503215	0.16191	7.4762E-05	1.333	0.00061552	1.4949	0.00069028	461.75961287551485	40.789	0.4111	40.812	40.629	41.04	0.023006					12	11	2	0	0	0	0.024436	1	3550	3550		10.866	0	1	128140	+		56644	37644	39551	39617	62138	62138					0.0393232047457559
PAAPSGGRPRG	11	Unmodified	_PAAPSGGRPRG_					0	0	0		TMEM200C|p.Q580Pfs*21|1|0.14|ENSG00000206432|chr18:5890316-5890325|GGTGGCTCCT/-|frameshift_variant;ENSG00000206432|ENST00000383490|TMEM200C	TMEM200C|p.Q580Pfs*21|1|0.14|ENSG00000206432|chr18:5890316-5890325|GGTGGCTCCT/-|frameshift_variant	TMEM200C|p.Q580Pfs*21|1|0.14|ENSG00000206432|chr18:5890316-5890325|GGTGGCTCCT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2960815429688	2	511.778139	1021.54173	-0.37098	-0.00018986	2.2619	0.0011576	1.8909	0.00096774	512.280845219372	65.345	0.20092	65.383	65.254	65.455	0.037384					6	5	2	0	0	0	0.024736	1	7659	7659		22.58	10.373	1	126860			56645	10470	39552	39618	62139	62139					0.03181626109096669
PAAPSRPTI	9	Unmodified	_PAAPSRPTI_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000590806.5_1_19:10922561-10941720:+|nuORF	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.8878173828125	2	455.261259	908.507966	-0.87337	-0.00039761	-1.0482	-0.00047723	-1.9216	-0.00087484	455.2601254706989	37.71	0.55988	37.628	37.323	37.883	-0.082512					22	15	2	0	0	0	0.023817	1	3095	3095		42.396	13.247	1	193390			56646	1675	39553	39619	62140	62140					0.05005204617339132
PAAPTAPGPA	10	Unmodified	_PAAPTAPGPA_					0	0	0			REV__ENSG00000198535|ENST00000355522|C2CD4A	REV__ENSG00000198535|ENST00000355522|C2CD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7485046386719	2	425.226885	848.439217	-0.95549	-0.0004063	-4.156	-0.0017673	-5.1115	-0.0021736	425.22527238502175	25.801	0.51079	25.801	25.652	26.163	0					16	11	2	0	0	0	0.03519	1	1301	1301		37.159	0	1	88046	+		56647	28429	39554	39620	62141	62141					0.0089354031762241
PAAPVACSC	9	Unmodified	_PAAPVACSC_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.74273681640625	2	409.680399	817.346245	1.3851	0.00056744	0.81735	0.00033485	2.2024	0.00090229	409.6813047245172	55.174	0.16621	55.174	55.083	55.249	0					7	4	2	0	0	0	0.024357	1	6067	6067		35.201	0	1	44871			56648	10188	39555	39621	62142	62142					-0.06973423731631101
PAAQEAEPP	9	Unmodified	_PAAQEAEPP_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.88812255859375	2	455.219257	908.423961	-0.99607	-0.00045343	3.0489	0.0013879	2.0528	0.00093449	455.2209660107656	37.755	0.37968	37.673	37.503	37.883	-0.082512					14	10	2	0	0	0	0.024261	1	3080	3080		30.318	23.582	1	82338			56649	9982	39556	39622	62143	62143					-0.033913712702315024
PAAQSDASALL	11	Unmodified	_PAAQSDASALL_					0	0	0			REV__ENST00000467654.1_1_1:161475257-161480016:+|nuORF	REV__ENST00000467654.1_1_1:161475257-161480016:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.812744140625	2	522.272021	1042.52949	-0.10406	-5.4346E-05	0.35134	0.00018349	0.24728	0.00012915	522.2718783070897	41.273	0.42419	41.296	41.04	41.464	0.023003					19	11	2	0	0	0	0.024752	1	3665	3665		19.104	0	1	249940	+		56650	33083	39557	39623	62144	62144					0.009925448553985916
PAARGPVAR	9	Unmodified	_PAARGPVAR_					0	0	0			REV__ENST00000298316.6_1_14:50360028-50360277:+|nuORF	REV__ENST00000298316.6_1_14:50360028-50360277:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.25146484375	2	447.767043	893.519533	-0.70479	-0.00031558	-1.575	-0.00070523	-2.2798	-0.0010208	447.7658465496362	25.242	0.77573	25.208	24.948	25.723	-0.034397					29	18	2	0	0	0	0.024354	1	1192	1192		16.473	0	1	97212	+		56651	30023	39558	39624	62145	62145					0.06851446431323893
PAARLPSAP	9	Unmodified	_PAARLPSAP_					0	0	0		nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	nc|ENSG00000177303|Q8WXE0-2|CASKIN2	nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2276916503906	2	440.255977	878.497401	-0.47237	-0.00020796	-0.15765	-6.9406E-05	-0.63002	-0.00027737	440.2555261682676	35.321	0.47351	35.321	34.906	35.38	0					15	12	2	0	0	0	0.024354	1	2672	2672		30.504	19.638	1	70600			56652	8727	39559	39625	62146	62146					0.05329221962892916
PAARPAAAP	9	Unmodified	_PAARPAAAP_					0	0	0		ENST00000560032.1_1_14:24641799-24642251:+|nuORF	ENST00000560032.1_1_14:24641799-24642251:+|nuORF	ENST00000560032.1_1_14:24641799-24642251:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.23065185546875	2	411.235045	820.455536	0.30439	0.00012517	1.617	0.00066498	1.9214	0.00079016	411.23505584177093	27.727	1.476	27.727	27.179	28.655	0					69	37	3	0	0	0	0.024443	1	1545	1545		26.796	0	1	809200			56653	16792	39560	39626	62147	62147					0.03812666274370713
PAARPAGATL	10	Unmodified	_PAARPAGATL_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.756103515625	2	462.766709	923.518865	-0.52424	-0.0002426	0.78132	0.00036157	0.25708	0.00011897	462.7667677617025	40.034	0.64015	39.922	39.603	40.243	-0.11223					24	16	2	0	0	0	0.03519	1	3524	3524		23.042	1.3402	1	323430			56654	5518	39561	39627	62148	62148					0.054046069916125816
PAARPLQGDD	10	Unmodified	_PAARPLQGDD_					0	0	0			REV__ENST00000527561.5_1_8:144766681-144776697:+|nuORF	REV__ENST00000527561.5_1_8:144766681-144776697:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2618408203125	2	520.261988	1038.50942	-0.83575	-0.00043481	0.5415	0.00028172	-0.29425	-0.00015309	520.2621018374414	22.714	1.1494	22.714	22.291	23.441	0					100	25	6	0	0	0	0.71272	1	827	827		66.429	4.3219	1	5519400	+		56655	27386	39562	39628	62149	62149					-0.008292060845633387
PAARPRLGGD	10	Unmodified	_PAARPRLGGD_					0	0	0		nc|ENSG00000152620|Q4G0N4-2|NADK2;ENSG00000152620|ENST00000381937|NADK2	nc|ENSG00000152620|Q4G0N4-2|NADK2	nc|ENSG00000152620|Q4G0N4-2|NADK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8087158203125	2	505.280515	1008.54648	0.5822	0.00029417	-0.16394	-8.2837E-05	0.41826	0.00021134	505.28027381208585	18.949	0.34555	18.79	18.641	18.986	-0.15867					11	6	3	0	0	0	0.03519	1	356	356		14.865	1.0895	1	69623			56656	6287	39563	39629	62150	62150					0.04254510251860211
PAARRPPS	8	Unmodified	_PAARRPPS_					0	0	0		nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2;ENST00000464307.5_1_11:64374670-64390737:-|nuORF	nc|ENSG00000110076|Q9P2S2-2|NRXN2	nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.247314453125	2	426.245944	850.477334	0.05639	2.4036E-05	1.6874	0.00071926	1.7438	0.0007433	426.24743103277154	103.3	0.69844	103.17	102.79	103.49	-0.12783					47	16	5	0	0	0	1.0574	1	12857	12857		25.45	0	1	761650			56657	3021	39564	39630	62151	62151					0.046114710229517186
PAARSRRTE	9	Unmodified	_PAARSRRTE_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;nc|ENSG00000154237|Q38SD2-2|LRRK1;ENST00000527698.1_1_15:101464783-101514238:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2691040039062	2	522.288871	1042.56319	-0.13942	-7.2817E-05	2.6686	0.0013938	2.5292	0.001321	522.2904958312641	41.684	0.45117	41.454	41.274	41.725	-0.23029					15	11	2	0	0	0	0.024436	1	3721	3721		38.806	23.164	1	348640			56658	6392	39565	39631	62152	62152					0.043610111378029615
PAARTKPK	8	Unmodified	_PAARTKPK_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.28753662109375	2	434.771794	867.529036	-0.13331	-5.796E-05	0.76724	0.00033357	0.63392	0.00027561	434.77177046652486	25.874	0.54146	25.703	25.413	25.955	-0.17078					38	14	4	0	0	0	0.027866	1	1247	1247		34.173	17.699	1	476710			56659	928	39566	39632	62153	62153					0.08997214716850976
PAARVAIQT	9	Unmodified	_PAARVAIQT_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2301025390625	2	463.774534	925.534515	0.17426	8.0816E-05	-0.060495	-2.8056E-05	0.11376	5.276E-05	463.7743929112089	39.538	0.44779	39.538	39.323	39.771	0					22	12	2	0	0	0	0.024541	1	3376	3376		15.642	0.77694	1	909660			56660	6938	39567	39633	62154	62154					0.06876893508649573
PAASEVEGGQG	11	Unmodified	_PAASEVEGGQG_					0	0	0			REV__ENST00000455963.5_1_7:28220049-28280099:+|nuORF	REV__ENST00000455963.5_1_7:28220049-28280099:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.231201171875	2	501.230353	1000.44615	-1.4086	-0.00070605	1.9351	0.00096992	0.52646	0.00026388	501.23129103969774	38.586	1.6064	38.613	37.746	39.353	0.027275					120	44	4	0	0	0	0.70358	1	3176	3176		63.534	2.5619	1	4092900	+		56661	32791	39568	39634	62155	62155					-0.0540519159244468
PAASLAQPPT	10	Unmodified	_PAASLAQPPT_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7577819824219	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	1.0002	1	13264	13264		45.972	5.1941	1	5421500			56662	7803	39569	39635	62156	62156					0.024854810348642786
PAASPAQPGL	10	Unmodified	_PAASPAQPGL_					0	0	0			REV__ENST00000377833.8_1_10:17026244-17061882:-|nuORF	REV__ENST00000377833.8_1_10:17026244-17061882:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.744873046875	2	454.745442	907.476331	0.6119	0.00027826	-1.9362	-0.0008805	-1.3243	-0.00060224	454.74447025012137	101.61	1.8033	101.48	100.73	102.53	-0.13157					101	41	4	0	0	0	1.0142	1	12650	12650		44.117	0	1	2784600	+		56663	31387	39570	39636	62157	62157					0.018892118633857535
PAASTLGSY	9	Unmodified	_PAASTLGSY_					0	0	0		ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2549743652344	2	433.71635	865.418148	0.55727	0.0002417	1.1081	0.00048058	1.6653	0.00072228	433.71765018738637	102.81	0.22942	102.81	102.64	102.86	-0.0046005					10	5	2	0	0	0	0.024436	1	13085	13085		38.806	5.2906	1	220830			56664	8000	39571	39637	62158	62158					-0.019944697818914392
PAATIRPQ	8	Unmodified	_PAATIRPQ_					0	0	0			REV__ENST00000493668.1_1_X:9866192-9900301:+|nuORF	REV__ENST00000493668.1_1_X:9866192-9900301:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2710266113281	2	427.248152	852.481751	-0.93365	-0.0003989	2.5484	0.0010888	1.6148	0.00068991	427.249202777881	39.41	0.48932	39.311	39.127	39.616	-0.098755					22	13	2	0	0	0	0.027866	1	3345	3345		28.254	9.9299	1	200930	+		56665	33770	39572	39638	62159	62159					0.0496093544585392
PAAVLTPHG	9	Unmodified	_PAAVLTPHG_					0	0	0		ENST00000395323.7_1_2:30481397-30481577:+|nuORF	ENST00000395323.7_1_2:30481397-30481577:+|nuORF	ENST00000395323.7_1_2:30481397-30481577:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.2585754394531	2	431.742702	861.470852	-1.0315	-0.00044534	1.5504	0.0006694	0.51897	0.00022406	431.7432363327061	35.921	0.34414	35.879	35.688	36.032	-0.042454					16	9	2	0	0	0	0.024443	1	2764	2764		26.796	7.4361	1	198340			56666	13514	39573	39639	62160	62160					0.03457533071571106
PAAVPQPPAF	10	Unmodified	_PAAVPQPPAF_					0	0	0			REV__ENSG00000128016|ENST00000597629|ZFP36	REV__ENSG00000128016|ENST00000597629|ZFP36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.8214111328125	2	497.77146	993.528367	-0.08983	-4.4715E-05	-3.9754	-0.0019788	-4.0652	-0.0020236	497.76952610390094	43.041	0.78823	42.901	42.312	43.1	-0.13929					34	21	3	0	0	0	0.03519	1	3893	3893		18.324	0	1	270770	+		56667	22962	39574	39640	62161	62161					0.03134375277136314
PAAVRGSMS	9	Unmodified	_PAAVRGSMS_					0	0	0			REV__ENST00000511348.1_1_4:100870606-100871327:-|nuORF	REV__ENST00000511348.1_1_4:100870606-100871327:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2460632324219	2	438.22382	874.433086	-0.27993	-0.00012267	-0.019615	-8.5957E-06	-0.29955	-0.00013127	438.2233592397346	27.944	0.80714	27.94	27.692	28.499	-0.0042019					26	19	2	0	0	0	0.024323	1	1593	1593		44.117	35.294	1	45204	+		56668	34116	39575	39641	62162	62162					-0.009153011855346449
PAAWVDLTI	9	Unmodified	_PAAWVDLTI_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3056335449219	2	493.271293	984.528032	0.48314	0.00023832	-0.41713	-0.00020576	0.066007	3.2559E-05	493.2707078361781	69.483	0.49376	69.19	68.933	69.427	-0.29292					23	12	4	0	0	0	0.024466	1	8309	8309		7.1934	0	1	436810			56669	4628	39576	39642	62163	62163					0.035149555572729696
PAAWVIPGP	9	Unmodified	_PAAWVIPGP_					0	0	0		nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENSG00000076826|ENST00000160298|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7818908691406	2	454.255446	906.496338	-0.99025	-0.00044982	-1.8683	-0.00084868	-2.8585	-0.0012985	454.2537176133664	44.616	0.63575	44.467	44.094	44.73	-0.1488					38	18	3	0	0	0	0.023868	1	4282	4282		29.842	8.1392	1	228450			56670	1591	39577	39643	62164	62164					0.03935007593986484
PACSGPKDGPH	11	Unmodified	_PACSGPKDGPH_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000149451|Q9BZ11-3|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2421264648438	2	533.242741	1064.47093	-0.2285	-0.00012185	-3.4385	-0.0018336	-3.667	-0.0019554	533.24080396962	34.218	0.94058	33.994	33.68	34.621	-0.22412					66	23	4	0	0	0	0.87596	1	2485	2485		53.089	3.6474	1	5360100			56671	6088	39578	39644	62165	62165					-0.05872834990736919
PADAKIWKERK	11	Unmodified	_PADAKIWKERK_					0	0	0			REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2701721191406	3	447.9261	1340.75647	-0.30862	-0.00013824	-2.8401	-0.0012722	-3.1488	-0.0014104	447.9249153855494	22.137	1.2139	22.137	21.819	23.033	0					37	25	3	0	0	0	0.024779	1	787	787		21.78	3.9473	1	96872	+		56672	28846	39579	39645	62166	62166					0.09972128134154445
PADDLLLI	8	Unmodified	_PADDLLLI_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7788391113281	2	435.252569	868.490584	0.39874	0.00017355	-3.0134	-0.0013116	-2.6147	-0.001138	435.25129328411936	81.701	2.3354	81.57	81.135	83.47	-0.13075					105	55	3	0	0	0	0.027866	1	10381	10381		62.978	44.654	1	347970			56673	9659	39580	39646	62167	62167					0.05107864291676378
PADERGDGGD	10	Unmodified	_PADERGDGGD_					0	0	0			REV__nc|ENSG00000103199|O60304-2|ZNF500	REV__nc|ENSG00000103199|O60304-2|ZNF500	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7975769042969	2	494.70196	987.389367	0.56341	0.00027872	4.2949	0.0021247	4.8583	0.0024034	494.7037424736349	51.239	0.54884	51.239	50.882	51.431	0					20	14	2	0	0	0	0.03519	1	5389	5389		37.812	0	1	83235	+		56674	21365	39581	39647	62168	62168					-0.10483239148982193
PADQSKGLL	9	Unmodified	_PADQSKGLL_					0	0	0		ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.759033203125	2	464.758549	927.502546	-0.26062	-0.00012112	0.50134	0.000233	0.24072	0.00011188	464.75860149344084	53.433	0.71391	53.433	53.049	53.763	0					59	19	4	0	0	0	0.53979	1	5781	5781		56.721	3.7844	1	2759000			56675	9052	39582	39648	62169	62169					0.03589481034862274
PADRQLVA	8	Unmodified	_PADRQLVA_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2480163574219	2	435.245609	868.476666	0.26495	0.00011532	3.5915	0.0015632	3.8565	0.0016785	435.24701554658805	28.919	0.58746	29	28.742	29.329	0.080811					45	14	4	0	0	0	0.81662	1	1688	1688		57.811	7.7867	1	2881600			56676	823	39583	39649	62170	62170					0.03716631583245089
PADYNPLLF	9	Unmodified	_PADYNPLLF_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.267578125	2	525.26875	1048.52295	0.4855	0.00025502	-3.5	-0.0018385	-3.0145	-0.0015834	525.2663346084731	83.672	1.4056	83.503	82.948	84.353	-0.16915					82	32	5	0	0	0	0.29104	1	10110	10110		76.847	2.33	1	1012100			56677	9978	39584	39650	62171	62171					0.00062651694656779
PAEERRLL	8	Unmodified	_PAEERRLL_					0	0	0		ENST00000537834.5_1_19:40762870-40762945:-|nuORF	ENST00000537834.5_1_19:40762870-40762945:-|nuORF	ENST00000537834.5_1_19:40762870-40762945:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2870178222656	2	492.285266	982.555979	0.18433	9.0741E-05	4.0015	0.0019699	4.1858	0.0020606	492.28689660164446	75.781	1.4156	75.793	75.401	76.816	0.011635					81	36	3	0	0	0	0.845	1	9297	9297		55.504	0	1	3257000			56678	16377	39585	39651	62172	62172					0.06400278537375925
PAEFNEMEKVS	11	Oxidation (M)	_PAEFNEM(Oxidation (M))EKVS_		PAEFNEM(1)EKVS		PAEFNEM(80)EKVS	0	0	1			REV__nc|ENSG00000100360|Q9BW83-2|IFT27	REV__nc|ENSG00000100360|Q9BW83-2|IFT27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	648.7916259765625	2	648.79246	1295.57037	-3.411	-0.002213	2.0442	0.0013263	-1.3667	-0.00088671	648.7937161332941	90.321	0.82086	90.166	89.864	90.685	-0.1552					49	19	3	0	0	0	0.43676	2	11039	11039;11062		80.455	12.961	1	2490600	+		56679	21100	39586	39652	62173;62174	62173		646			-0.06559481887325092
PAEFNEMEKVS	11	Oxidation (M)	_PAEFNEM(Oxidation (M))EKVS_		PAEFNEM(1)EKVS		PAEFNEM(76)EKVS	0	0	1			REV__nc|ENSG00000100360|Q9BW83-2|IFT27	REV__nc|ENSG00000100360|Q9BW83-2|IFT27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	648.7911987304688	2	648.79246	1295.57037	-0.26299	-0.00017062	-1.0496	-0.000681	-1.3126	-0.00085163	648.7916745087851	90.328	0.82333	90.203	89.889	90.712	-0.12512					53	19	3	0	0	0	0.50263	1	11075	11075		76.17	8.676	1	2224500	+		56680	21100	39586	39652	62175	62175		646			-0.06559481887325092
PAEFNEMEKVS	11	Oxidation (M)	_PAEFNEM(Oxidation (M))EKVS_		PAEFNEM(1)EKVS		PAEFNEM(86)EKVS	0	0	1			REV__nc|ENSG00000100360|Q9BW83-2|IFT27	REV__nc|ENSG00000100360|Q9BW83-2|IFT27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	648.7916870117188	2	648.79246	1295.57037	-0.3478	-0.00022565	-1.5555	-0.0010092	-1.9033	-0.0012349	648.791353546279	90.396	0.82764	90.258	89.958	90.785	-0.13824					52	19	3	0	0	0	0.35364	1	11047	11047		85.862	17.016	1	2378500	+		56681	21100	39586	39652	62176	62176		646			-0.06559481887325092
PAEFNEMEKVS	11	Oxidation (M)	_PAEFNEM(Oxidation (M))EKVS_					0	0	1			REV__nc|ENSG00000100360|Q9BW83-2|IFT27	REV__nc|ENSG00000100360|Q9BW83-2|IFT27	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	648.79246	1295.57037	-3.411	-0.002213	2.0442	0.0013263	-1.3667	-0.00088671	648.7937161332941	90.321	0.82086	90.166	89.864	90.685	-0.1552	-0.043051	0.0025511	NaN	85.862	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2490600	+		56682	21100	39586	39652				646			-0.06559481887325092
PAEFNEMEKVS	11	Oxidation (M)	_PAEFNEM(Oxidation (M))EKVS_					0	0	1			REV__nc|ENSG00000100360|Q9BW83-2|IFT27	REV__nc|ENSG00000100360|Q9BW83-2|IFT27	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	648.79246	1295.57037	-0.26299	-0.00017062	-1.0496	-0.000681	-1.3126	-0.00085163	648.7916745087851	90.328	0.82333	90.203	89.889	90.712	-0.12512	-0.0059263	-0.0014635	NaN	85.862	53	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2224500	+		56683	21100	39586	39652				646			-0.06559481887325092
PAEFNEMEKVS	11	Oxidation (M)	_PAEFNEM(Oxidation (M))EKVS_					0	0	1			REV__nc|ENSG00000100360|Q9BW83-2|IFT27	REV__nc|ENSG00000100360|Q9BW83-2|IFT27	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	648.79246	1295.57037	-0.3478	-0.00022565	-1.5555	-0.0010092	-1.9033	-0.0012349	648.791353546279	90.396	0.82764	90.258	89.958	90.785	-0.13824	0.048977	-0.0021199	NaN	85.862	52	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2378500	+		56684	21100	39586	39652				646			-0.06559481887325092
PAEWVALN	8	Unmodified	_PAEWVALN_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2818298339844	2	450.23471	898.454868	-0.049836	-2.2438E-05	-3.5397	-0.0015937	-3.5895	-0.0016161	450.2335121379468	51.066	0.17814	50.916	50.792	50.97	-0.14916					8	4	2	0	0	0	0.027866	1	5343	5343		44.531	9.3304	1	192690			56685	16521	39587	39653	62177	62177					0.0015782683465204173
PAFPGELAH	9	Unmodified	_PAFPGELAH_					0	0	0		ENSG00000140067|ENST00000556222|FAM181A;nc|ENSG00000140067|Q8N9Y4|FAM181A	ENSG00000140067|ENST00000556222|FAM181A	ENSG00000140067|ENST00000556222|FAM181A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7505187988281	2	469.74016	937.465767	-0.22755	-0.00010689	-4.3458	-0.0020414	-4.5733	-0.0021483	469.73789175897315	30.298	1.0811	30.372	29.879	30.96	0.074314					53	25	3	0	0	0	0.024386	1	1849	1849		52.299	8.1824	1	381200			56686	5391	39588	39654	62178	62178					-0.005467707910611352
PAGAGQRLVQ	10	Unmodified	_PAGAGQRLVQ_					0	0	0			REV__ENST00000591224.1_1_19:46181025-46181577:+|nuORF	REV__ENST00000591224.1_1_19:46181025-46181577:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2743835449219	2	498.78289	995.551228	-0.46797	-0.00023342	0.45587	0.00022738	-0.0121	-6.0351E-06	498.7828159069657	20.566	0.5458	20.343	20.117	20.663	-0.22344					19	10	3	0	0	0	0.03519	1	510	510		19.997	11.765	1	88015	+		56687	35718	39589	39655	62179	62179					0.05327394394601015
PAGAGQRLVQ	10	Unmodified	_PAGAGQRLVQ_					0	0	0			REV__ENST00000591224.1_1_19:46181025-46181577:+|nuORF	REV__ENST00000591224.1_1_19:46181025-46181577:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.78289	995.551228	-0.033907	-1.6912E-05	-0.082784	-4.1291E-05	-0.11669	-5.8203E-05	498.78262902741756	20.442	0.54049	20.274	20.002	20.542	-0.16774	-0.036568	-4.3334E-05	NaN	19.997	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98301	+		56688	35718	39589	39655							0.05327394394601015
PAGAGQRLVQ	10	Unmodified	_PAGAGQRLVQ_					0	0	0			REV__ENST00000591224.1_1_19:46181025-46181577:+|nuORF	REV__ENST00000591224.1_1_19:46181025-46181577:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.78289	995.551228	0.78149	0.00038979	-0.70408	-0.00035118	0.077407	3.8609E-05	498.78213536897135	20.511	0.49406	20.316	20.088	20.582	-0.19577	0.0047288	-0.00066312	NaN	19.997	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87384	+		56689	35718	39589	39655							0.05327394394601015
PAGAPHKK	8	Unmodified	_PAGAPHKK_					0	0	0			REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.2376708984375	2	403.237587	804.460622	-0.077957	-3.1435E-05	0.42225	0.00017027	0.34429	0.00013883	403.237626781048	29.823	1.2726	29.823	29.112	30.384	0					85	31	4	0	0	0	1.0133	3	1860	1860;1872;1886		35.201	7.7724	1	3092100	+		56690	32743	39590	39656	62180;62181;62182	62180					0.050569701369909126
PAGAPHKK	8	Unmodified	_PAGAPHKK_					0	0	0			REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.2376708984375	2	403.237587	804.460622	-0.0070464	-2.8414E-06	0.29056	0.00011717	0.28352	0.00011433	403.23755128637663	29.767	1.5666	29.776	29.098	30.665	0.0086193					91	38	4	0	0	0	0.94001	3	1843	1843;1858;1871		46.766	18.512	1	2744200	+		56691	32743	39590	39656	62183;62184;62185	62183					0.050569701369909126
PAGAPHKK	8	Unmodified	_PAGAPHKK_					0	0	0			REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.23760986328125	2	403.237587	804.460622	1.486	0.00059922	-1.2383	-0.00049933	0.24772	9.9891E-05	403.2369317697124	29.549	1.2375	29.627	28.979	30.216	0.078344					78	30	3	0	0	0	0.95417	2	1776	1776;1790		44.531	16.277	1	3667800	+		56692	32743	39590	39656	62186;62187	62186					0.050569701369909126
PAGDLFDI	8	Unmodified	_PAGDLFDI_					0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.727294921875	2	424.213443	846.412334	-0.64262	-0.00027261	-1.0422	-0.00044213	-1.6848	-0.00071473	424.21445523770865	34.322	0.188	34.372	34.253	34.441	0.050255					6	4	2	0	0	0	0.027866	1	2506	2506		28.254	14.479	1	92003			56693	9709	39592	39657	62188	62188					-0.017015682935834775
PAGDSKYDL	9	Unmodified	_PAGDSKYDL_					0	0	0		nc|ENSG00000188452|Q49MI3-3|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;nc|ENSG00000188452|Q49MI3-7|CERKL;nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-8|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2571105957031	2	483.232364	964.450176	1.2338	0.00059622	-1.303	-0.00062964	-0.069161	-3.3421E-05	483.2313233848393	37.005	0.19336	37.005	36.887	37.081	0					6	4	2	0	0	0	0.024506	1	2976	2976		16.473	0	1	44573			56694	9720	39593	39658	62189	62189					-0.03347102098769028
PAGELPPQ	8	Unmodified	_PAGELPPQ_					0	0	0		ENST00000592634.5_1_19:5895897-5896059:-|nuORF	ENST00000592634.5_1_19:5895897-5896059:-|nuORF	ENST00000592634.5_1_19:5895897-5896059:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5600280761719	2	404.713611	807.412668	-1.046	-0.00042334	1.6707	0.00067617	0.62471	0.00025283	404.71418971879876	33.28	0.36297	33.115	32.958	33.321	-0.16565					12	8	3	0	0	0	0.027866	1	2326	2326		19.36	15.95	1	58994			56695	17378	39594	39659	62190	62190					0.0012585142628722679
PAGFQMAP	8	Unmodified	_PAGFQMAP_					0	0	0		ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	ENSG00000212123|ENST00000419421|PRR22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2474670410156	2	409.696906	817.37926	0.93433	0.00038279	2.8073	0.0011501	3.7416	0.0015329	409.69791282245797	37.2	0.79906	37.232	36.878	37.677	0.032269					45	20	3	0	0	0	0.027866	1	3008	3008		23.037	14.805	1	1248100			56696	10480	39595	39660	62191	62191					-0.03673473617266154
PAGGGGGG	8	Unmodified	_PAGGGGGG_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000168772|ENST00000394767|CXXC4	nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000168772|ENST00000394767|CXXC4	nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7850952148438	1	529.236501	528.229225	-0.16472	-8.7173E-05	3.827	0.0020254	3.6623	0.0019382	529.240971697889	72.409	0.29495	72.132	71.988	72.282	-0.2769					8	6	2	0	0	0	0.027866	1	8477	8477		1.619	0	1	30952			56697	728;7860	39596	39661	62192	62192					-0.05376077564710613
PAGGREKV	8	Unmodified	_PAGGREKV_					0	0	0		ENST00000550487.5_1_12:50505841-50505931:+|nuORF	ENST00000550487.5_1_12:50505841-50505931:+|nuORF	ENST00000550487.5_1_12:50505841-50505931:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.2685852050781	2	407.232502	812.450451	0.042125	1.7155E-05	0.68708	0.0002798	0.72921	0.00029696	407.2326633420111	28.224	0.78146	28.22	27.966	28.747	-0.0042019					34	18	2	0	0	0	0.027866	1	1673	1673		68.485	0	1	1167900			56698	16582	39597	39662	62193	62193					0.03672362411748509
PAGGRVRPK	9	Unmodified	_PAGGRVRPK_					0	0	0			REV__ENSG00000178951|ENST00000322357|ZBTB7A	REV__ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.2845153808594	2	469.288143	936.561733	0.21255	9.9746E-05	2.6342	0.0012362	2.8467	0.0013359	469.28925066519656	52.097	2.0104	52.097	50.544	52.554	0					75	55	2	0	0	0	0.024457	1	5379	5379		37.159	0	1	251570	+		56699	27217	39598	39663	62194	62194					0.09091421839696068
PAGHTSPSV	9	Unmodified	_PAGHTSPSV_					0	0	0		ENST00000531870.5_1_11:33183268-33211605:+|nuORF	ENST00000531870.5_1_11:33183268-33211605:+|nuORF	ENST00000531870.5_1_11:33183268-33211605:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2657470703125	2	426.714142	851.413731	-0.12437	-5.3069E-05	-2.9432	-0.0012559	-3.0676	-0.001309	426.7127632607739	42.502	0.55938	42.369	42.115	42.674	-0.13219					34	15	3	0	0	0	0.024412	1	3905	3905		31.955	1.4512	1	875800			56700	16270	39599	39664	62195	62195					-0.01791934204811696
PAGIVPFLSFG	11	Unmodified	_PAGIVPFLSFG_					0	0	0			REV__ENST00000427077.1_1_2:102957780-102959889:+|nuORF	REV__ENST00000427077.1_1_2:102957780-102959889:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.786376953125	2	552.808042	1103.60153	-1.1653	-0.00064421	-2.4805	-0.0013712	-3.6458	-0.0020154	552.8067866191664	56	1.1549	55.785	55.201	56.356	-0.21551					49	30	2	0	0	0	0.024738	1	5994	5994		19.997	8.4858	1	633500	+		56701	22218	39600	39665	62196	62196					0.05387503999736509
PAGKCKLV	8	Unmodified	_PAGKCKLV_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.18292236328125	2	408.244024	814.473494	0.0071362	2.9133E-06	-3.4786	-0.0014201	-3.4715	-0.0014172	408.24243243543305	24.725	0.60656	24.51	24.336	24.943	-0.2151					17	13	2	0	0	0	0.027866	1	1146	1146		8.8223	0	1	44033	+		56702	37077	39601	39666	62197	62197					0.05883665204873978
PAGKMARFTA	10	Unmodified	_PAGKMARFTA_					0	0	0		ENST00000422364.2_1_11:63993896-63994040:+|nuORF	ENST00000422364.2_1_11:63993896-63994040:+|nuORF	ENST00000422364.2_1_11:63993896-63994040:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.267333984375	2	525.281669	1048.54878	-1.0653	-0.00055959	-1.9644	-0.0010319	-3.0297	-0.0015915	525.2791688658269	22.386	0.42092	22.386	22.245	22.665	0					14	8	3	0	0	0	0.03519	1	775	775		22.58	0.61977	1	20211			56703	14004	39602	39667	62198	62198					0.026452226652963873
PAGLHKCI	8	Unmodified	_PAGLHKCI_					0	0	0			REV__ENST00000523767.5_1_5:149932896-149933094:+|nuORF	REV__ENST00000523767.5_1_5:149932896-149933094:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.245849609375	2	419.733823	837.453093	0.080021	3.3587E-05	0.68291	0.00028664	0.76293	0.00032023	419.7341618000013	23.992	0.83519	24.068	23.392	24.228	0.076241					26	18	2	0	0	0	0.027866	1	866	866		15.636	0	1	59391	+		56704	34361	39603	39668	62199	62199					0.02786494545057394
PAGLLPHL	8	Unmodified	_PAGLLPHL_					0	0	0		ENSG00000087510|ENST00000201031|TFAP2C;TFAP2C|p.Y240Lfs*7|1|0.15|ENSG00000087510|chr20:56633483-56633484|-/T|frameshift_variant	ENSG00000087510|ENST00000201031|TFAP2C	ENSG00000087510|ENST00000201031|TFAP2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.50970458984375	2	409.250163	816.485774	0.58752	0.00024044	0.66434	0.00027188	1.2519	0.00051233	409.25036438388304	28.015	0.296	28.096	27.871	28.167	0.080877					9	6	2	0	0	0	0.027866	1	1546	1546		24.504	0	1	16583			56705	1853	39604	39669	62200	62200					0.07019024939563678
PAGLLRPKK	9	Unmodified	_PAGLLRPKK_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.311279296875	2	490.324194	978.633835	-0.043119	-2.1142E-05	0.043092	2.1129E-05	-2.7591E-05	-1.3529E-08	490.32401403408716	17.848	0.34911	17.642	17.464	17.813	-0.20669					14	6	3	0	0	0	0.024541	1	209	209		17.365	5.1581	1	105240			56706	9098	39605	39670	62201	62201					0.14366336193415918
PAGLNIGPVVA	11	Unmodified	_PAGLNIGPVVA_					0	0	0		ENST00000478092.1_1_3:123003457-123005669:-|nuORF	ENST00000478092.1_1_3:123003457-123005669:-|nuORF	ENST00000478092.1_1_3:123003457-123005669:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.29791259765625	2	504.297842	1006.58113	-0.10118	-5.1026E-05	0.061054	3.0789E-05	-0.040128	-2.0237E-05	504.2977977908085	61.853	0.90803	61.639	61.375	62.283	-0.21375					76	22	4	0	0	0	1.0054	1	6963	6963		35.618	2.1027	1	5668100			56707	15128	39606	39671	62202	62202					0.07810333339944009
PAGLQLDR	8	Unmodified	_PAGLQLDR_					0	0	0			REV__ENST00000418019.5_1_2:219423366-219427504:-|nuORF	REV__ENST00000418019.5_1_2:219423366-219427504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.24871826171875	2	435.245609	868.476666	0.26495	0.00011532	3.5915	0.0015632	3.8565	0.0016785	435.24701554658805	28.919	0.58746	29	28.742	29.329	0.080811					45	14	4	0	0	0	0.89627	1	1675	1675		51.335	8.861	1	2881600	+		56708	32107	39607	39672	62203	62203					0.037166315832337204
PAGLRGPAA	9	Unmodified	_PAGLRGPAA_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.23529052734375	2	405.235045	808.455536	-0.20435	-8.2811E-05	0.80488	0.00032616	0.60052	0.00024335	405.2351638376568	23.729	0.86424	23.668	23.386	24.251	-0.06086					59	19	4	0	0	0	0.4855	1	957	957		60.294	17.819	1	683140			56709	1335	39608	39673	62204	62204					0.04364666274364026
PAGLVCLLL	9	Unmodified	_PAGLVCLLL_					0	0	0			REV__ENSG00000006016|ENST00000392386|CRLF1	REV__ENSG00000006016|ENST00000392386|CRLF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2401123046875	2	449.775157	897.53576	-0.22966	-0.0001033	4.4617	0.0020068	4.2321	0.0019035	449.7769153592961	24.046	0.73631	24.046	23.737	24.474	0					22	16	2	0	0	0	0.024389	1	1014	1014		39.021	0	1	60758	+		56710	19818	39609	39674	62205	62205					0.08289391553205405
PAGNLFPVK	9	Unmodified	_PAGNLFPVK_					0	0	0		ENST00000331552.11_1_19:19314086-19314203:-|nuORF	ENST00000331552.11_1_19:19314086-19314203:-|nuORF	ENST00000331552.11_1_19:19314086-19314203:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.3106689453125	2	471.774003	941.533452	-0.066956	-3.1588E-05	0.0049428	2.3319E-06	-0.062014	-2.9256E-05	471.7701651686012	48.662	0.87755	48.509	48.057	48.935	-0.15276					52	24	4	0	0	0	0.024262	1	4967	4967		38.806	0	1	319560			56711	12344	39610	39675	62206	62206					0.06034679139747823
PAGNNKFS	8	Unmodified	_PAGNNKFS_					0	0	0		ENST00000450732.1_3_3:38542952-38560776:+|nuORF;nc|ENSG00000157036|Q9Y2C4-2|EXOG;ENST00000474071.5_1_3:38542952-38583434:+|nuORF;nc|ENSG00000157036|Q9Y2C4-3|EXOG;nc|ENSG00000157036|Q9Y2C4-4|EXOG;ENSG00000157036|ENST00000287675|EXOG	ENST00000450732.1_3_3:38542952-38560776:+|nuORF	ENST00000450732.1_3_3:38542952-38560776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	417.7087097167969	2	417.70886	833.403166	0.45495	0.00019004	-1.1998	-0.00050116	-0.74485	-0.00031113	417.7081311418408	98.053	1.0099	98.053	97.594	98.604	0					44	23	3	0	0	0	1.0574	1	12527	12527		25.45	0	1	264120			56712	6569	39611	39676	62207	62207					-0.020199168592398564
PAGPACPEEA	10	Unmodified	_PAGPACPEEA_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.27447509765625	2	471.205292	940.396032	0.7526	0.00035463	4.2791	0.0020164	5.0317	0.002371	471.20706618728667	49.572	0.22082	49.572	49.399	49.62	0					7	5	2	0	0	0	0.03519	1	5103	5103		29.15	7.4472	1	50945	+		56713	25181	39612	39677	62208	62208					-0.07655017521983609
PAGPAGSPGE	10	Unmodified	_PAGPAGSPGE_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.52166748046875	2	420.198325	838.382096	2.3227	0.00097601	-0.5149	-0.00021636	1.8078	0.00075965	420.1980800003681	24.705	0.48203	24.525	24.285	24.767	-0.18089					14	10	2	0	0	0	0.03519	1	1087	1087		37.159	11.709	1	48692			56714	1239	39613	39678	62209	62209					-0.04355926958760392
PAGPKGAKGAT	11	Unmodified	_PAGPKGAKGAT_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7612609863281	2	477.771991	953.529429	0.24249	0.00011586	-0.29733	-0.00014206	-0.054838	-2.62E-05	477.77175938728845	34.048	1.0149	34.043	33.676	34.691	-0.0045624					39	25	3	0	0	0	0.024803	1	2501	2501		44.377	13.874	1	332910			56715	10315	39614	39679	62210	62210					0.05080589646047429
PAGPPGSSSNP	11	Unmodified	_PAGPPGSSSNP_					0	0	0		NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2469482421875	2	484.227613	966.440674	-1.0761	-0.00052106	-1.4287	-0.00069182	-2.5048	-0.0012129	484.22680153874506	40.149	0.33388	40.172	39.977	40.311	0.023006					11	8	2	0	0	0	0.024762	1	3457	3457		37.812	2.6595	1	169700			56716	18018	39615	39680	62211	62211					-0.04388870384286747
PAGPPGSSSNP	11	Unmodified	_PAGPPGSSSNP_					0	0	0		NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.227613	966.440674	0.18858	9.1314E-05	-2.7825	-0.0013474	-2.5939	-0.0012561	484.226242113228	40.203	0.39671	40.203	39.951	40.347	0	0.052223	-0.00034845	NaN	42.864	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122010			56717	18018	39615	39680							-0.04388870384286747
PAGPPGSSSNP	11	Unmodified	_PAGPPGSSSNP_					0	0	0		NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	NABP2|p.P194S|1|0.17|ENSG00000139579|chr12:56229157-56229157|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.227613	966.440674	-0.26954	-0.00013052	-2.888	-0.0013984	-3.1575	-0.001529	484.2262685135459	40.19	0.48024	40.078	39.867	40.347	-0.11223	-0.073326	-0.0004506	NaN	42.864	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142780			56718	18018	39615	39680							-0.04388870384286747
PAGPPRHQF	9	Unmodified	_PAGPPRHQF_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7787170410156	2	503.764501	1005.51445	-0.48364	-0.00024364	-4.3418	-0.0021873	-4.8255	-0.0024309	503.7621823588248	23.292	0.67188	23.292	22.894	23.566	0					41	15	4	0	0	0	0.024386	1	859	859		25.45	0	1	236470	+		56719	22186	39616	39681	62212	62212					0.011911425687117116
PAGPPVLGPH	10	Unmodified	_PAGPPVLGPH_					0	0	0			REV__ENST00000303210.8_1_7:100276544-100276721:+|nuORF	REV__ENST00000303210.8_1_7:100276544-100276721:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.27447509765625	2	471.263802	940.513051	0.66815	0.00031488	-0.65488	-0.00030862	0.01328	6.2582E-06	471.2633969951155	49.589	0.58868	49.589	49.324	49.913	0					28	15	2	0	0	0	0.03519	1	5103	5103		35.201	31.516	1	849290	+		56720	30089	39617	39682	62213	62213					0.04041508479951972
PAGPTILIL	9	Unmodified	_PAGPTILIL_					0	0	0			REV__IRGQ|p.V303I|1|0.27|ENSG00000167378|chr19:43592991-43592991|C/T|missense_variant	REV__IRGQ|p.V303I|1|0.27|ENSG00000167378|chr19:43592991-43592991|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.2583923339844	2	447.786579	893.558604	0.25102	0.00011241	2.9758	0.0013325	3.2268	0.0014449	447.78765214071524	42.806	0.25208	42.667	42.521	42.773	-0.13929					9	6	2	0	0	0	0.024487	1	3922	3922		17.365	10.172	1	50302	+		56721	36153	39618	39683	62214	62214					0.1075673394233263
PAGPVHLL	8	Unmodified	_PAGPVHLL_					0	0	0		chr10:6737628-6738357|445|17.0|0.91|4.22|+|0|LINP1,LINP1|1	chr10:6737628-6738357|445|17.0|0.91|4.22|+|0|LINP1,LINP1|1	chr10:6737628-6738357|445|17.0|0.91|4.22|+|0|LINP1,LINP1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	403.22528076171875	2	402.242338	802.470124	0.16352	6.5776E-05	0.2987	0.00012015	0.46223	0.00018593	402.242297892402	27.127	0.79668	27.114	26.704	27.5	-0.012983					33	20	2	0	0	0	0.027866	1	1485	1485		10.185	0	1	68584			56722	304	39619	39684	62215	62215					0.06098738422531369
PAGQPSMTH	9	Unmodified	_PAGQPSMTH_					0	0	0		ENST00000455236.4_1_22:38121309-38121573:+|nuORF	ENST00000455236.4_1_22:38121309-38121573:+|nuORF	ENST00000455236.4_1_22:38121309-38121573:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2318420410156	2	463.213452	924.412351	0.4747	0.00021989	1.4131	0.00065455	1.8878	0.00087444	463.21395240850137	28.897	0.71147	28.978	28.533	29.245	0.080811					27	17	2	0	0	0	0.024294	1	1613	1613		55.504	19.886	1	116100			56723	14573	39620	39685	62216	62216					-0.05287891565217251
PAGQPSMTH	9	Unmodified	_PAGQPSMTH_					0	0	0		ENST00000455236.4_1_22:38121309-38121573:+|nuORF	ENST00000455236.4_1_22:38121309-38121573:+|nuORF	ENST00000455236.4_1_22:38121309-38121573:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.213452	924.412351	-0.49295	-0.00022834	2.4542	0.0011368	1.9612	0.00090847	463.21433040367475	29.242	0.79207	29.245	28.839	29.631	0.0031357	0.069974	0.00038037	NaN	45.952	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181920			56724	14573	39620	39685							-0.05287891565217251
PAGQRSIP	8	Unmodified	_PAGQRSIP_					0	0	0		ENST00000420632.6_1_1:40420864-40421035:+|nuORF	ENST00000420632.6_1_1:40420864-40421035:+|nuORF	ENST00000420632.6_1_1:40420864-40421035:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.9264831542969	2	413.232502	824.450451	0.21853	9.0304E-05	0.16137	6.6682E-05	0.3799	0.00015699	413.2324566937446	31.449	1.3482	31.449	30.838	32.186	0					54	32	2	0	0	0	0.027866	1	2066	2066		42.474	0	1	1014400			56725	13978	39621	39686	62217	62217					0.03120362411766564
PAGQRSIP	8	Unmodified	_PAGQRSIP_					0	0	0		ENST00000420632.6_1_1:40420864-40421035:+|nuORF	ENST00000420632.6_1_1:40420864-40421035:+|nuORF	ENST00000420632.6_1_1:40420864-40421035:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	413.232502	824.450451	-0.035168	-1.4533E-05	0.57291	0.00023675	0.53774	0.00022221	413.2325656215946	31.103	1.6363	31.172	30.414	32.051	0.06896	-0.16774	0.00022039	NaN	42.474	72	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002300			56726	13978	39621	39686							0.03120362411766564
PAGRATPPL	9	Unmodified	_PAGRATPPL_					0	0	0		ENST00000560454.1_1_15:78730777-78731116:+|nuORF	ENST00000560454.1_1_15:78730777-78731116:+|nuORF	ENST00000560454.1_1_15:78730777-78731116:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.255615234375	2	440.255977	878.497401	-0.93314	-0.00041082	1.1633	0.00051213	0.23011	0.00010131	440.2562742781473	37.813	0.79682	37.73	37.286	38.083	-0.082516					57	22	4	0	0	0	0.17455	2	3107	3107;3119		94.006	3.2298	1	2018800			56727	16802	39622	39687	62218;62219	62218					0.05329221962904285
PAGRATPPL	9	Unmodified	_PAGRATPPL_					0	0	0		ENST00000560454.1_1_15:78730777-78731116:+|nuORF	ENST00000560454.1_1_15:78730777-78731116:+|nuORF	ENST00000560454.1_1_15:78730777-78731116:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	440.255977	878.497401	-0.86661	-0.00038153	1.1759	0.00051768	0.30925	0.00013615	440.2563693117916	37.93	1.2463	37.959	37.447	38.693	0.029068	0.11508	-9.3616E-06	NaN	94.006	68	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1750000			56728	16802	39622	39687							0.05329221962904285
PAGRGDAIAK	10	Unmodified	_PAGRGDAIAK_					0	0	0			REV__ENSG00000129292|ENST00000395386|PHF20L1	REV__ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.75286865234375	2	478.269616	954.524678	-0.00033127	-1.5844E-07	-0.54911	-0.00026262	-0.54944	-0.00026278	478.2694520688944	33.116	1.2834	33.116	32.494	33.777	0					74	34	4	0	0	0	0.03519	1	2279	2279		37.812	0	1	3783900	+		56729	23042	39623	39688	62220	62220					0.045597055032772005
PAGRGDAIAK	10	Unmodified	_PAGRGDAIAK_					0	0	0			REV__ENSG00000129292|ENST00000395386|PHF20L1	REV__ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.75286865234375	2	478.269616	954.524678	-0.37433	-0.00017903	-0.36887	-0.00017642	-0.7432	-0.00035545	478.2695946523786	32.98	1.1656	32.987	32.483	33.649	0.0066261					78	31	4	0	0	0	0.03519	1	2245	2245		54.776	5.3348	1	3682500	+		56730	23042	39623	39688	62221	62221					0.045597055032772005
PAGRGGTLR	9	Unmodified	_PAGRGGTLR_					0	0	0		ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.756591796875	2	442.756675	883.498798	-0.78944	-0.00034953	1.0727	0.00047495	0.28327	0.00012542	442.7570535464593	21.122	0.73802	21.122	20.753	21.491	0					25	14	2	0	0	0	0.59099	1	621	621		53.351	12.779	1	465800			56731	14270	39624	39689	62222	62222					0.052388560516646976
PAGRLVKP	8	Unmodified	_PAGRLVKP_					0	0	0		ENST00000561518.5_2_16:2314685-2318034:-|nuORF	ENST00000561518.5_2_16:2314685-2318034:-|nuORF	ENST00000561518.5_2_16:2314685-2318034:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.7533874511719	2	419.268887	836.523222	-0.28111	-0.00011786	0.54391	0.00022804	0.2628	0.00011018	419.2690209736918	45.543	0.86689	45.34	44.802	45.669	-0.20226					37	24	2	0	0	0	0.027866	1	4342	4342		8.8223	0	1	394830			56732	16826	39625	39690	62223	62223					0.09842116205186358
PAGRPPER	8	Unmodified	_PAGRPPER_					0	0	0			REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.75262451171875	2	440.243401	878.472249	-0.15329	-6.7484E-05	1.6913	0.00074457	1.538	0.00067709	440.2441983726462	23.882	0.95169	23.667	23.425	24.377	-0.2151					28	21	2	0	0	0	0.027866	1	962	962		42.396	23.036	1	203430	+		56733	26267	39626	39691	62224	62224					0.02815167160326837
PAGRPPER	8	Unmodified	_PAGRPPER_					0	0	0			REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	440.243401	878.472249	-0.50737	-0.00022337	0.73931	0.00032547	0.23194	0.00010211	440.243779619366	23.649	0.29952	23.588	23.428	23.727	-0.06086	-0.018557	0.00094373	NaN	42.396	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42326	+		56734	26267	39626	39691							0.02815167160326837
PAGRPPER	8	Unmodified	_PAGRPPER_					0	0	0			REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	440.243401	878.472249	-0.078903	-3.4736E-05	0.73534	0.00032373	0.65644	0.00028899	440.24362648501744	23.525	0.29813	23.601	23.392	23.69	0.076241	-0.0049747	0.00094024	NaN	42.396	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38628	+		56735	26267	39626	39691							0.02815167160326837
PAGRPTAPGH	10	Unmodified	_PAGRPTAPGH_					0	0	0		ENST00000418259.5_2_11:64677533-64677644:-|nuORF	ENST00000418259.5_2_11:64677533-64677644:-|nuORF	ENST00000418259.5_2_11:64677533-64677644:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.27734375	2	480.754133	959.493713	0.30908	0.00014859	-1.1949	-0.00057445	-0.88582	-0.00042586	480.7531037212646	48.276	0.54381	48.089	47.825	48.368	-0.18684					40	14	4	0	0	0	0.03519	1	4816	4816		37.159	11.709	1	1247700			56736	13932	39627	39692	62225	62225					0.012345521890324562
PAGRRARR	8	Unmodified	_PAGRRARR_					0	0	0		nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	nc|ENSG00000135272|Q9P1T7-1|MDFIC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.7631530761719	2	470.289008	938.563464	-0.44468	-0.00020913	-3.2532	-0.00153	-3.6979	-0.0017391	470.28483567720485	35.83	0.74956	35.625	35.306	36.056	-0.20518					32	20	4	0	0	0	0.027866	1	2765	2765		13.775	0	1	172400			56737	18295	39628	39693	62226	62226					0.09172475648313139
PAGRVRGPK	9	Unmodified	_PAGRVRGPK_					0	0	0			REV__nc|ENSG00000165782|Q86T03-3|PIP4P1	REV__nc|ENSG00000165782|Q86T03-3|PIP4P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2841796875	2	469.288143	936.561733	0.022874	1.0734E-05	2.8363	0.0013311	2.8592	0.0013418	469.2892748566942	52.124	1.7971	51.976	50.691	52.488	-0.14735					90	49	2	0	0	0	0.024412	1	5375	5375		40.573	8.6178	1	218380	+		56738	36878	39629	39694	62227	62227					0.09091421839707436
PAGSAQRL	8	Unmodified	_PAGSAQRL_					0	0	0			REV__ENSG00000125089|ENST00000245105|SH3TC1	REV__ENSG00000125089|ENST00000245105|SH3TC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.25628662109375	2	400.224677	798.434801	3.0645	0.0012265	-2.3385	-0.00093592	0.726	0.00029056	400.22360329644266	25.399	0.74209	25.479	25.093	25.835	0.08009					32	17	3	0	0	0	0.027866	1	1139	1139		30.504	1.3541	1	282370	+		56739	22798	39630	39695	62228	62228					0.027520758947048307
PAGSAQRL	8	Unmodified	_PAGSAQRL_					0	0	0			REV__ENSG00000125089|ENST00000245105|SH3TC1	REV__ENSG00000125089|ENST00000245105|SH3TC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	400.224677	798.434801	0.61257	0.00024516	-0.02259	-9.0412E-06	0.58998	0.00023612	400.22453234116483	25.615	0.75235	25.615	25.248	26.001	0	0.043057	0.00048611	NaN	30.504	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328780	+		56740	22798	39630	39695							0.027520758947048307
PAGSAQRL	8	Unmodified	_PAGSAQRL_					0	0	0			REV__ENSG00000125089|ENST00000245105|SH3TC1	REV__ENSG00000125089|ENST00000245105|SH3TC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	400.224677	798.434801	-0.10249	-4.1019E-05	0.62323	0.00024943	0.52074	0.00020841	400.22486633122475	25.656	0.67899	25.622	25.351	26.03	-0.034395	0.049804	0.0010031	NaN	30.504	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329790	+		56741	22798	39630	39695							0.027520758947048307
PAGTTGSTFY	10	Unmodified	_PAGTTGSTFY_					0	0	0			REV__ENSG00000183549|ENST00000331849|ACSM5	REV__ENSG00000183549|ENST00000331849|ACSM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2314758300781	2	501.232364	1000.45018	-0.78391	-0.00039292	-3.2847	-0.0016464	-4.0686	-0.0020393	501.23097603286163	38.473	1.4963	38.39	37.503	38.999	-0.082516					123	41	5	0	0	0	0.941	1	3200	3200		51.335	0.14276	1	3964400	+		56742	27581	39631	39696	62229	62229					-0.050031020987717056
PAGVAGHRGN	10	Unmodified	_PAGVAGHRGN_					0	0	0			REV__ENST00000522709.5_1_8:132916400-132952828:+|nuORF	REV__ENST00000522709.5_1_8:132916400-132952828:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2459411621094	2	468.243932	934.473312	-0.18849	-8.8262E-05	1.8659	0.00087368	1.6774	0.00078542	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	1.1267	1	12995	12995		29.15	4.6455	1	4433200	+		56743	34342	39632	39697	62230	62230					0.0034538152923460075
PAGVGRRGP	9	Unmodified	_PAGVGRRGP_					0	0	0			REV__ENST00000341690.10_1_16:84213598-84214685:-|nuORF	REV__ENST00000341690.10_1_16:84213598-84214685:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.7518005371094	2	433.751393	865.488233	0.50306	0.0002182	-0.21412	-9.2875E-05	0.28894	0.00012533	433.7512119293158	19.727	1.5901	19.727	18.972	20.562	0					82	32	4	0	0	0	0.36105	1	426	426		68.485	12.98	1	1278400	+		56744	30639	39633	39698	62231	62231					0.050108733972251684
PAGVRKIIL	9	Unmodified	_PAGVRKIIL_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7708435058594	2	483.826569	965.638586	-0.36898	-0.00017852	0.38222	0.00018493	0.013245	6.4082E-06	483.82657718697953	43.217	0.6577	43.078	42.809	43.466	-0.13929					40	17	3	0	0	0	0.024535	1	4028	4028		12.207	0	1	1623900			56745	1097	39634	39699	62232	62232					0.1543922033619083
PAGVRPPR	8	Unmodified	_PAGVRPPR_					0	0	0		ENST00000359534.3_1_6:39197096-39197180:-|nuORF	ENST00000359534.3_1_6:39197096-39197180:-|nuORF	ENST00000359534.3_1_6:39197096-39197180:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.256103515625	2	425.256311	848.49807	-1.1644	-0.00049519	1.4266	0.00060665	0.26212	0.00011147	425.25682355913864	35.588	1.0631	35.588	35.2	36.263	0					41	28	2	0	0	0	1.0574	1	2769	2769		26.796	0	1	2609900			56746	12742	39635	39700	62233	62233					0.06776061402615596
PAHFSPLV	8	Unmodified	_PAHFSPLV_					0	0	0		ENSG00000101276|ENST00000645534|SLC52A3;nc|ENSG00000101276|Q9NQ40-2|SLC52A3	ENSG00000101276|ENST00000645534|SLC52A3	ENSG00000101276|ENST00000645534|SLC52A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.255859375	2	434.239796	866.465038	-0.39437	-0.00017125	0.41613	0.0001807	0.021759	9.4484E-06	434.23887581690656	104.27	1.9342	104.15	103.33	105.26	-0.12928					96	57	3	0	0	0	0.027866	1	12920	12920		26.796	0	1	174560			56747	2303	39636	39701	62234	62234					0.02646434559892441
PAHIRVFIS	9	Unmodified	_PAHIRVFIS_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2618408203125	2	520.306001	1038.59745	-0.81995	-0.00042663	0.10277	5.3474E-05	-0.71718	-0.00037315	520.3058094596785	22.72	0.13762	22.72	22.619	22.757	0					4	2	2	0	0	0	0.023837	1	827	827		54.776	3.4409	1	9261.1	+		56748	20129	39637	39702	62235	62235					0.07969459296691639
PAHPGGAVFW	10	Unmodified	_PAHPGGAVFW_					0	0	0		ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.78173828125	2	519.761426	1037.5083	-0.29956	-0.0001557	0.87244	0.00045346	0.57288	0.00029776	519.7627808330544	79.065	0.24587	79.083	78.946	79.192	0.018677					7	5	2	0	0	0	0.03519	1	9713	9713		35.201	8.4046	1	48285			56749	12333	39638	39703	62236	62236					-0.00895375662821607
PAHPPLPWER	10	Unmodified	_PAHPPLPWER_					0	0	0		ENST00000393559.1_1_7:107643456-107643537:-|nuORF	ENST00000393559.1_1_7:107643456-107643537:-|nuORF	ENST00000393559.1_1_7:107643456-107643537:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.25628662109375	3	400.548852	1198.62473	2.9829	0.0011948	2.7278	0.0010926	5.7107	0.0022874	400.5497310718323	25.664	0.63153	25.744	25.377	26.008	0.08009					30	14	3	0	0	0	0.03519	1	1139	1139		26.063	15.959	1	150170			56750	13452	39639	39704	62237	62237					0.03335942837065886
PAHPPLPWER	10	Unmodified	_PAHPPLPWER_					0	0	0		ENST00000393559.1_1_7:107643456-107643537:-|nuORF	ENST00000393559.1_1_7:107643456-107643537:-|nuORF	ENST00000393559.1_1_7:107643456-107643537:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	400.548852	1198.62473	0.68688	0.00027513	4.3981	0.0017616	5.0849	0.0020368	400.5505277601473	25.757	0.55722	25.757	25.486	26.043	0	-0.0096082	-0.00019011	NaN	26.063	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166880			56751	13452	39639	39704							0.03335942837065886
PAHPPLPWER	10	Unmodified	_PAHPPLPWER_					0	0	0		ENST00000393559.1_1_7:107643456-107643537:-|nuORF	ENST00000393559.1_1_7:107643456-107643537:-|nuORF	ENST00000393559.1_1_7:107643456-107643537:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	400.548852	1198.62473	-0.020966	-8.3981E-06	5.3288	0.0021345	5.3079	0.0021261	400.5508749586868	25.822	0.43244	25.799	25.609	26.042	-0.023088	0.032117	0.00092836	NaN	26.063	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179660			56752	13452	39639	39704							0.03335942837065886
PAHRGGKV	8	Unmodified	_PAHRGGKV_					0	0	0		ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	411.2405090332031	2	411.240661	820.46677	2.3727	0.00097575	-1.7531	-0.00072093	0.61964	0.00025482	411.2397489364451	18.986	0.64213	18.986	18.724	19.366	0					29	12	3	0	0	0	1.0133	1	351	351		35.201	4.6971	1	281650			56753	12793	39640	39705	62238	62238					0.049354883685168716
PAHRGGKV	8	Unmodified	_PAHRGGKV_					0	0	0		ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	411.24066162109375	2	411.240661	820.46677	0.44241	0.00018194	0.038091	1.5665E-05	0.4805	0.0001976	411.24053674803673	19.195	0.88437	19.077	18.756	19.64	-0.11872					32	17	3	0	0	0	0.96719	1	368	368		42.474	3.6683	1	310940			56754	12793	39640	39705	62239	62239					0.049354883685168716
PAHRGGKV	8	Unmodified	_PAHRGGKV_					0	0	0		ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	411.2405700683594	2	411.240661	820.46677	3.5833	0.0014736	-3.1692	-0.0013033	0.41411	0.0001703	411.23922088930476	19.164	0.83446	19.23	18.995	19.829	0.066195					29	16	3	0	0	0	0.88442	1	336	336		52.299	13.493	1	274850			56755	12793	39640	39705	62240	62240					0.049354883685168716
PAHRGGKV	8	Unmodified	_PAHRGGKV_					0	0	0		ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	411.240661	820.46677	0.46951	0.00019308	0.0043149	1.7745E-06	0.47383	0.00019486	411.24049854845316	19.369	0.29712	19.208	19.034	19.331	-0.16079	0.029897	0.00095101	NaN	52.299	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28224			56756	12793	39640	39705							0.049354883685168716
PAHRGGKV	8	Unmodified	_PAHRGGKV_					0	0	0		ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	411.240661	820.46677	0.97811	0.00040224	-0.65212	-0.00026818	0.32599	0.00013406	411.24022416562843	19.518	0.39842	19.318	19.156	19.554	-0.2001	0.13946	0.0004111	NaN	52.299	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39708			56757	12793	39640	39705							0.049354883685168716
PAHRGGKV	8	Unmodified	_PAHRGGKV_					0	0	0		ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	411.240661	820.46677	1.5543	0.00063921	-0.95721	-0.00039364	0.59713	0.00024557	411.24016180808655	19.484	0.39654	19.25	19.077	19.473	-0.23345	0.072165	0.00016018	NaN	52.299	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39000			56758	12793	39640	39705							0.049354883685168716
PAHVEPAVK	9	Unmodified	_PAHVEPAVK_					0	0	0			REV__ENST00000169298.7_1_3:186794026-186794239:+|nuORF	REV__ENST00000169298.7_1_3:186794026-186794239:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.24481201171875	2	474.269084	946.523616	0.66104	0.00031351	0.80575	0.00038214	1.4668	0.00069565	474.26937092154805	45.779	0.23874	45.779	45.646	45.885	0					9	6	2	0	0	0	0.023635	1	4462	4462		39.253	0	1	151120	+		56759	29279	39641	39706	62241	62241					0.04821491134373446
PAIIKWVGM	9	Unmodified	_PAIIKWVGM_					0	0	0			REV__ENSG00000063127|ENST00000335875|SLC6A16	REV__ENSG00000063127|ENST00000335875|SLC6A16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.8110046386719	2	507.793881	1013.57321	-0.15227	-7.7319E-05	4.0961	0.00208	3.9438	0.0020026	507.7958032676346	45.589	0.37677	45.491	45.29	45.667	-0.098167					20	10	3	0	0	0	0.024541	1	4310	4310		20.482	9.6163	1	231680	+		56760	20269	39642	39707	62242	62242					0.06696482818824734
PAILESLI	8	Unmodified	_PAILESLI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2364196777344	2	428.262936	854.51132	0.23473	0.00010053	-2.5665	-0.0010992	-2.3318	-0.00099863	428.26168679764635	28.724	1.2305	28.805	28.574	29.805	0.080811					39	30	2	0	0	0	0.027866	1	1794	1794		14.664	0.88877	1	369590			56761	10202	39643	39708	62243	62243					0.0782445467133357
PAILGYINK	9	Unmodified	_PAILGYINK_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.73468017578125	2	494.794935	987.575317	-0.060307	-2.984E-05	0.71911	0.00035581	0.65881	0.00032597	494.79485044188965	67.711	0.5785	67.473	67.289	67.868	-0.23814					22	13	2	0	0	0	0.024443	1	7813	7813		26.796	0	1	301780	+		56762	25912	39644	39709	62244	62244					0.08103234828263339
PAIQRIPL	8	Unmodified	_PAIQRIPL_					0	0	0		nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA	nc|ENSG00000001167|P23511-2|NFYA	nc|ENSG00000001167|P23511-2|NFYA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7456359863281	2	454.28982	906.565087	0.204	9.2676E-05	-0.11222	-5.0983E-05	0.091776	4.1693E-05	454.2895722830976	54.094	0.80192	53.947	53.675	54.477	-0.14723					55	22	3	0	0	0	0.027866	1	5879	5879		44.531	26.207	1	591290			56763	717	39645	39710	62245	62245					0.10806671893703879
PAIRAYLKTI	10	Unmodified	_PAIRAYLKTI_					0	0	0		ENSG00000204671|ENST00000377035|IL31	ENSG00000204671|ENST00000377035|IL31	ENSG00000204671|ENST00000377035|IL31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2789916992188	2	573.355691	1144.69683	0.81285	0.00046605	-1.9495	-0.0011178	-1.1367	-0.00065172	573.354856565506	77.71	0.21267	77.468	77.32	77.532	-0.24232					7	4	2	0	0	0	0.03519	1	9255	9255		17.468	0	1	184180			56764	10366	39646	39711	62246	62246					0.13026857190789087
PAKALAGGPGG	11	Unmodified	_PAKALAGGPGG_					0	0	0		ENST00000367021.7_1_1:209974702-209979388:-|nuORF	ENST00000367021.7_1_1:209974702-209979388:-|nuORF	ENST00000367021.7_1_1:209974702-209979388:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.77490234375	2	448.253434	894.492316	-0.23134	-0.0001037	2.7674	0.0012405	2.5361	0.0011368	448.2538617062975	23.124	0.5718	23.124	22.711	23.283	0					17	12	2	0	0	0	0.024802	1	896	896		40.778	0	1	23707			56765	12833	39647	39712	62247	62247					0.04084918100295454
PAKPEPAPE	9	Unmodified	_PAKPEPAPE_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.789794921875	2	468.245275	934.475997	-0.23321	-0.0001092	-1.7834	-0.00083508	-2.0166	-0.00094428	468.24425412654614	27.154	0.69369	27.154	26.741	27.435	0					35	17	4	0	0	0	0.024477	1	1471	1471		20.947	0	1	313510	+		56766	36770	39648	39713	62248	62248					0.006137921435083626
PAKPQVSL	8	Unmodified	_PAKPQVSL_					0	0	0			REV__ENSG00000186806|ENST00000335624|VSIG10L	REV__ENSG00000186806|ENST00000335624|VSIG10L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.25311279296875	2	420.252903	838.491253	-0.42167	-0.00017721	0.46644	0.00019602	0.044772	1.8815E-05	420.2529804530528	45.404	0.85166	45.255	44.974	45.825	-0.1488					73	24	5	0	0	0	0.2917	1	4389	4389		115.46	2.0474	1	8184900	+		56767	27884	39649	39714	62249	62249					0.06554703731376321
PAKRAHVVP	9	Unmodified	_PAKRAHVVP_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.28009033203125	2	487.798343	973.582134	0.5234	0.00025531	-0.70398	-0.0003434	-0.18058	-8.8089E-05	487.797095814434	77.933	0.57991	77.722	77.376	77.956	-0.21087					18	13	2	0	0	0	0.024487	1	9563	9563		24.203	0	1	54849			56768	7346	39650	39715	62250	62250					0.0942859249950061
PAKTIAKA	8	Unmodified	_PAKTIAKA_					0	0	0			REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.25640869140625	2	400.255446	798.496338	3.0822	0.0012337	-0.26032	-0.00010419	2.8219	0.0011295	400.2553114974012	25.28	0.87429	25.36	25.134	26.008	0.08009					29	20	2	0	0	0	0.99042	1	1129	1129		38.806	0	1	838210	+		56769	21120	39651	39716	62251	62251					0.08903007593983148
PAKTIAKA	8	Unmodified	_PAKTIAKA_					0	0	0			REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	400.255446	798.496338	0.59123	0.00023664	2.5761	0.0010311	3.1674	0.0012678	400.25647846547906	25.337	0.81838	25.337	25.094	25.912	0	-0.0055831	0.00029067	NaN	38.806	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544100	+		56770	21120	39651	39716							0.08903007593983148
PAKTIAKA	8	Unmodified	_PAKTIAKA_					0	0	0			REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	400.255446	798.496338	-0.26477	-0.00010598	3.4954	0.0013991	3.2307	0.0012931	400.2568117884131	25.366	0.60277	25.331	25.121	25.723	-0.034395	-0.011523	0.0010266	NaN	38.806	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576930	+		56771	21120	39651	39716							0.08903007593983148
PAKTIAKA	8	Unmodified	_PAKTIAKA_					0	0	0			REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	REV__ENST00000556548.5_1_14:24910766-24911042:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	400.255446	798.496338	3.0822	0.0012337	-0.26032	-0.00010419	2.8219	0.0011295	400.2553114974012	25.28	0.87429	25.36	25.134	26.008	0.08009	0.017106	-0.0019799	NaN	38.806	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	838210	+		56772	21120	39651	39716							0.08903007593983148
PALADAHLG	9	Unmodified	_PALADAHLG_					0	0	0			REV__ENST00000409271.5_2_2:109546654-109556742:-|nuORF	REV__ENST00000409271.5_2_2:109546654-109556742:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.7319030761719	2	432.732335	863.450116	0.26426	0.00011436	-1.3347	-0.00057759	-1.0705	-0.00046323	432.731609240746	98.399	2.1324	98.399	97.814	99.946	0					148	49	4	0	0	0	0.78069	3	12617	12526;12534;12617		40.573	3.4135	1	3598600	+		56773	29579	39652	39717	62252;62253;62254	62254					0.012929426918958598
PALADAHLG	9	Unmodified	_PALADAHLG_					0	0	0			REV__ENST00000409271.5_2_2:109546654-109556742:-|nuORF	REV__ENST00000409271.5_2_2:109546654-109556742:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7319641113281	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	0.96855	1	12579	12579		26.796	1.3459	1	3615900	+		56774	29579	39652	39717	62255	62255					0.012929426918958598
PALALALSL	9	Unmodified	_PALALALSL_					0	0	0			REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF	REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2379150390625	2	434.778754	867.542954	-0.33549	-0.00014586	3.9207	0.0017047	3.5852	0.0015588	434.7801651707588	34.52	1.2952	34.516	34.19	35.485	-0.0045624					82	33	3	0	0	0	0.024412	1	2539	2539		40.573	15.122	1	1112600	+		56775	31287	39653	39718	62256	62256					0.10388447425293634
PALALALSL	9	Unmodified	_PALALALSL_					0	0	0			REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF	REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.23828125	2	434.778754	867.542954	-0.23661	-0.00010287	3.778	0.0016426	3.5413	0.0015397	434.78020444133267	34.666	1.368	34.716	34.213	35.581	0.050255					84	35	3	0	0	0	0.024386	1	2473	2473		42.474	24.15	1	968930	+		56776	31287	39653	39718	62257	62257					0.10388447425293634
PALALTVLA	9	Unmodified	_PALALTVLA_					0	0	0			REV__ENST00000373615.8_2_9:126774341-126774419:+|nuORF	REV__ENST00000373615.8_2_9:126774341-126774419:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	2	434.778754	867.542954	0.074719	3.2486E-05	3.0656	0.0013329	3.1403	0.0013654	434.77992067571773	38.391	0.75215	38.173	37.957	38.71	-0.21849					69	20	4	0	0	0	1.0051	1	3183	3183		19.36	0	1	5000400	+		56777	31262	39654	39719	62258	62258					0.10388447425282266
PALAPFVI	8	Unmodified	_PALAPFVI_					0	0	0			REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.89544677734375	2	414.254914	826.495276	-0.94823	-0.00039281	-3.007	-0.0012456	-3.9552	-0.0016385	414.25324263679346	26.958	0.39944	27.039	26.883	27.282	0.081293					18	10	2	0	0	0	0.027866	1	1394	1394		33.493	0	1	165960	+		56778	29350	39655	39720	62259	62259					0.07508793225076715
PALAPFVI	8	Unmodified	_PALAPFVI_					0	0	0			REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	414.254914	826.495276	-0.52733	-0.00021845	-3.0021	-0.0012436	-3.5295	-0.0014621	414.2535175988321	27.09	0.54854	26.922	26.638	27.186	-0.16816	-0.16126	0.0011975	NaN	24.504	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193840	+		56779	29350	39655	39720							0.07508793225076715
PALAPFVI	8	Unmodified	_PALAPFVI_					0	0	0			REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.254914	826.495276	-0.029853	-1.2367E-05	-4.4615	-0.0018482	-4.4914	-0.0018606	414.252892881309	27.311	0.416	27.155	27.018	27.434	-0.15664	0.071622	-1.162E-05	NaN	24.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136050	+		56780	29350	39655	39720							0.07508793225076715
PALAPQHS	8	Unmodified	_PALAPQHS_					0	0	0		ENST00000439101.5_1_2:242440235-242447431:-|nuORF	ENST00000439101.5_1_2:242440235-242447431:-|nuORF	ENST00000439101.5_1_2:242440235-242447431:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.7183837890625	2	410.719227	819.423902	-0.18606	-7.6417E-05	-0.79238	-0.00032545	-0.97844	-0.00040186	410.7188202086517	96.155	1.7784	95.999	95.4	97.178	-0.15646					90	40	4	0	0	0	1.0574	3	11836	11836;11847;11875		26.796	3.7536	1	1136900			56781	14324	39656	39721	62260;62261;62262	62260					0.006966735204287033
PALATLYAL	9	Unmodified	_PALATLYAL_					0	0	0		ENSG00000164849|ENST00000444847|GPR146	ENSG00000164849|ENST00000444847|GPR146	ENSG00000164849|ENST00000444847|GPR146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.738037109375	2	466.776211	931.537869	-0.32545	-0.00015191	-4.3676	-0.0020387	-4.693	-0.0021906	466.77476308847304	45.357	0.26669	45.208	45.115	45.381	-0.1488					11	7	2	0	0	0	0.024466	1	4385	4385		25.45	0	1	104600			56782	7328	39657	39722	62263	62263					0.06936143562643338
PALCRPAL	8	Unmodified	_PALCRPAL_					0	0	0		ETV3L|p.P156H|1|0.33|ENSG00000253831|chr1:157098725-157098725|G/T|missense_variant;ENSG00000253831|ENST00000454449|ETV3L	ETV3L|p.P156H|1|0.33|ENSG00000253831|chr1:157098725-157098725|G/T|missense_variant	ETV3L|p.P156H|1|0.33|ENSG00000253831|chr1:157098725-157098725|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7691650390625	2	420.741648	839.468743	0.60806	0.00025584	-0.35328	-0.00014864	0.25479	0.0001072	420.7414798614522	58.602	0.83775	58.602	58.457	59.295	0					32	22	2	0	0	0	0.027866	1	6659	6659		69.093	11.64	1	213050			56783	10870	39658	39723	62264	62264					0.042587810620943856
PALDQPKR	8	Unmodified	_PALDQPKR_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7709045410156	2	462.766709	923.518865	-0.46181	-0.00021371	1.0446	0.00048339	0.58275	0.00026968	462.7670283708067	23.827	0.34226	23.827	23.694	24.036	0					21	7	3	0	0	0	0.93274	1	968	968		47.916	1.9636	1	799120			56784	10651	39659	39724	62265	62265					0.054046069916125816
PALDQPKR	8	Unmodified	_PALDQPKR_					0	0	0		nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.76824951171875	2	462.766709	923.518865	0.42236	0.00019545	1.4224	0.00065826	1.8448	0.00085371	462.76748522823954	23.709	0.48902	23.785	23.647	24.136	0.076241					26	10	3	0	0	0	0.91239	1	919	919		50.025	2.3672	1	721400			56785	10651	39659	39724	62266	62266					0.054046069916125816
PALEEAEAA	9	Unmodified	_PALEEAEAA_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	ENSG00000039139|ENST00000265104|DNAH5;nc|ENSG00000124721|Q96JB1-2|DNAH8	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2438049316406	2	450.71909	899.423627	-0.44543	-0.00020076	0.52824	0.00023809	0.082811	3.7324E-05	450.7201723192568	31.081	0.24147	30.896	30.743	30.984	-0.18503					6	5	2	0	0	0	0.024354	1	2027	2027		47.916	10.756	1	17760			56786	1059;4071	39660	39725	62267	62267					-0.030107909901062158
PALEEDVI	8	Unmodified	_PALEEDVI_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	ENSG00000276043|ENST00000650932|UHRF1;ARHGEF10L|p.N739Tfs*3|1|0.29|ENSG00000074964|chr1:17640240-17640240|C/-|frameshift_variant	ENSG00000276043|ENST00000650932|UHRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.7460632324219	2	443.231833	884.449113	-0.21071	-9.3394E-05	-1.0667	-0.00047281	-1.2775	-0.00056621	443.23042829691457	24.066	0.51681	23.886	23.607	24.124	-0.17989					20	11	3	0	0	0	0.027866	1	1025	1025		54.765	20.592	1	62815			56787	362;126	39661	39726	62268	62268					0.002266835323325722
PALFLPAPGE	10	Unmodified	_PALFLPAPGE_					0	0	0			REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF	REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.2913513183594	2	506.279118	1010.54368	0.90016	0.00045573	-0.10155	-5.1415E-05	0.79861	0.00040432	506.27899481328075	96.054	0.5309	96.056	95.825	96.356	0.0020752					18	12	2	0	0	0	0.03519	1	12194	12194		21.96	0	1	91930	+		56788	35660	39662	39727	62269	62269					0.03883242074323334
PALGILPGW	9	Unmodified	_PALGILPGW_					0	0	0			REV__nc|ENSG00000078808|Q9BRK5-4|SDF4	REV__nc|ENSG00000078808|Q9BRK5-4|SDF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.9480895996094	2	462.271096	922.527639	2.1935	0.001014	-3.5568	-0.0016442	-1.3633	-0.00063022	462.26858602993	19.054	0.29588	18.82	18.682	18.978	-0.23345					10	5	3	0	0	0	0.024475	1	361	361		21.702	0	1	23876	+		56789	20621	39663	39728	62270	62270					0.0632758062808989
PALGRTGPS	9	Unmodified	_PALGRTGPS_					0	0	0		ENST00000471660.5_1_3:87276594-87294874:+|nuORF;ENST00000472024.2_1_3:87276594-87289522:+|nuORF	ENST00000471660.5_1_3:87276594-87294874:+|nuORF	ENST00000471660.5_1_3:87276594-87294874:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2373352050781	2	428.237784	854.461016	-0.64663	-0.00027691	0.82931	0.00035514	0.18268	7.8233E-05	428.23802944476233	29.711	1.1416	29.789	29.489	30.63	0.078344					59	27	4	0	0	0	0.31247	1	1806	1806		73.975	4.8818	1	1355900			56790	14962	39664	39729	62271	62271					0.027963450661900424
PALGSRGY	8	Unmodified	_PALGSRGY_					0	0	0			REV__ENST00000515748.2_1_5:148929731-148930568:-|nuORF	REV__ENST00000515748.2_1_5:148929731-148930568:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.7185363769531	2	410.719227	819.423902	0.76249	0.00031317	-1.8416	-0.00075639	-1.0791	-0.00044322	410.71839091260426	95.381	1.9576	95.381	94.702	96.659	0					107	45	4	0	0	0	1.0574	2	12140	12140;12177		26.796	1.1219	1	3807300	+		56791	34209	39665	39730	62272;62273	62272					0.006966735204287033
PALHSDSLI	9	Unmodified	_PALHSDSLI_					0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.75860595703125	2	476.758549	951.502546	0.59757	0.0002849	-1.8144	-0.00086505	-1.2169	-0.00058015	476.7575883352349	103.57	1.7067	103.44	102.86	104.57	-0.12723					123	42	4	0	0	0	0.97516	1	12957	12957		25.45	0.94616	1	2742400	+		56792	27415	39666	39731	62274	62274					0.024854810348642786
PALHVNQMM	9	Unmodified	_PALHVNQMM_					0	0	0			REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7009887695312	2	520.75443	1039.49431	-0.23756	-0.00012371	1.5363	0.00080004	1.2987	0.00067633	521.2564971469299	32.782	0.36331	32.617	32.476	32.839	-0.16565					9	8	2	0	0	0	0.024517	1	2298	2298		26.796	0	1	58678	+		56793	20048	39667	39732	62275	62275					-0.023861124777567966
PALHVNQMM	9	Unmodified	_PALHVNQMM_					0	0	0			REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.75443	1039.49431	-1.0971	-0.00057131	-0.087648	-4.5643E-05	-1.1847	-0.00061695	520.7542522377969	32.784	0.56209	32.784	32.494	33.056	0	0.15331	0.00039199	NaN	26.796	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660690	+		56794	20048	39667	39732							-0.023861124777567966
PALHVNQMM	9	Unmodified	_PALHVNQMM_					0	0	0			REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.75443	1039.49431	-0.71931	-0.00037458	-0.1199	-6.2438E-05	-0.83921	-0.00043702	520.754057727011	32.639	0.55667	32.651	32.376	32.933	0.011799	0.019833	0.0003584	NaN	26.796	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644510	+		56795	20048	39667	39732							-0.023861124777567966
PALHVNQMM	9	Unmodified	_PALHVNQMM_					0	0	0			REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	REV__IFT88|p.K453Rfs*5|1|0.8|ENSG00000032742|chr13:20631041-20631041|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.75443	1039.49431	-0.43274	-0.00022535	-0.98133	-0.00051103	-1.4141	-0.00073638	520.7538748772951	32.409	0.68165	32.472	32.163	32.845	0.062889	-0.15879	-0.00053879	NaN	26.796	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610450	+		56796	20048	39667	39732							-0.023861124777567966
PALIPKDL	8	Unmodified	_PALIPKDL_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.25677490234375	2	433.770929	865.527304	-0.23928	-0.00010379	-4.2469	-0.0018422	-4.4861	-0.001946	433.7699869073374	102.8	0.55513	102.8	102.57	103.12	0					22	13	3	0	0	0	0.027866	1	13143	13143		38.806	20.482	1	829160	+		56797	26688	39668	39733	62276	62276					0.08916160908222537
PALLELVR	8	Unmodified	_PALLELVR_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1;AMOTL1|p.A663V|1|0.19|ENSG00000166025|chr11:94859568-94859568|C/T|missense_variant	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.76611328125	2	455.789653	909.564752	-0.49908	-0.00022748	-0.28063	-0.00012791	-0.77971	-0.00035538	455.78930404013465	43.904	0.18656	43.904	43.8	43.987	0					6	4	2	0	0	0	0.027866	1	4159	4159		31.955	18.996	1	51039			56798	7496	39669	39734	62277	62277					0.1063525217384722
PALLVRAAR	9	Unmodified	_PALLVRAAR_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.77081298828125	2	483.813993	965.613434	-0.53993	-0.00026122	0.61731	0.00029866	0.07738	3.7438E-05	483.8141198630675	43.216	0.40212	43.216	43.038	43.44	0					13	10	2	0	0	0	0.024535	1	4024	4024		25.45	8.0852	1	108660			56799	6592	39670	39735	62278	62278					0.12925165533590643
PALLVRAAR	9	Unmodified	_PALLVRAAR_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7703552246094	2	483.813993	965.613434	0.071275	3.4484E-05	-0.56304	-0.00027241	-0.49177	-0.00023793	483.81352621527185	43.277	0.36869	43.308	43.153	43.522	0.030823					14	9	2	0	0	0	0.024541	1	3980	3980		12.207	0	1	130380			56800	6592	39670	39735	62279	62279					0.12925165533590643
PALNPLSSP	9	Unmodified	_PALNPLSSP_					0	0	0		ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2351989746094	2	448.247818	894.481082	-0.23299	-0.00010444	2.8344	0.0012705	2.6014	0.0011661	448.2494913122756	26.695	0.3734	26.672	26.569	26.943	-0.023088					9	8	2	0	0	0	0.022756	1	1396	1396		90.777	0	1	59522			56801	5603	39671	39736	62280	62280					0.029620960061379265
PALPARAPA	9	Unmodified	_PALPARAPA_					0	0	0		ENST00000504806.5_1_5:10564479-10564683:+|nuORF	ENST00000504806.5_1_5:10564479-10564683:+|nuORF	ENST00000504806.5_1_5:10564479-10564683:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.2585754394531	2	432.25852	862.502486	-0.78697	-0.00034017	1.0747	0.00046456	0.28775	0.00012438	432.2588597049529	35.824	1.0275	35.824	35.343	36.37	0					71	27	4	0	0	0	0.75282	1	2791	2791		42.474	0	1	2591400			56802	15721	39672	39737	62281	62281					0.06573525825501747
PALPGKTK	8	Unmodified	_PALPGKTK_					0	0	0			REV__ENSG00000103375|ENST00000219660|AQP8	REV__ENSG00000103375|ENST00000219660|AQP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.5475769042969	2	406.255446	810.496338	1.0802	0.00043882	2.5665	0.0010427	3.6467	0.0014815	406.2563832040231	40.489	2.2096	40.512	39.907	42.117	0.023006					87	62	3	0	0	0	0.027866	1	3494	3494		17.365	0	1	584490	+		56803	21381	39673	39738	62282	62282					0.08351007593989834
PALPKGDPL	9	Unmodified	_PALPKGDPL_					0	0	0		ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7456359863281	2	454.26601	906.517468	-0.018401	-8.3591E-06	-1.8688	-0.00084894	-1.8872	-0.0008573	454.2649818638213	53.985	0.52493	53.838	53.529	54.054	-0.14723					22	14	2	0	0	0	0.024294	1	5879	5879		45.952	13.997	1	311890			56804	4111	39674	39739	62283	62283					0.06046972902856851
PALPKGDPL	9	Unmodified	_PALPKGDPL_					0	0	0		ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	454.26601	906.517468	0.53921	0.00024495	-2.3395	-0.0010628	-1.8003	-0.00081782	454.2646877732184	53.82	0.45785	53.82	53.618	54.076	0	0.085718	-0.00082964	NaN	45.952	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238940			56805	4111	39674	39739							0.06046972902856851
PALPKGDPL	9	Unmodified	_PALPKGDPL_					0	0	0		ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	454.26601	906.517468	-0.85957	-0.00039047	0.0052035	2.3638E-06	-0.85436	-0.00038811	454.26603397978266	53.782	0.34647	53.646	53.462	53.808	-0.13617	-0.088807	0.0013006	NaN	45.952	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194850			56806	4111	39674	39739							0.06046972902856851
PALPKGDPL	9	Unmodified	_PALPKGDPL_					0	0	0		ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	454.26601	906.517468	-0.14879	-6.759E-05	-1.1472	-0.00052113	-1.296	-0.00058872	454.2653391660693	53.893	0.33773	53.648	53.525	53.863	-0.2453	-0.086295	0.00025363	NaN	45.952	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138640			56807	4111	39674	39739							0.06046972902856851
PALPKGDPL	9	Unmodified	_PALPKGDPL_					0	0	0		ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	ENSG00000125492|ENST00000263610|BARHL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	454.26601	906.517468	-0.28777	-0.00013072	-1.1137	-0.00050593	-1.4015	-0.00063665	454.26532633138294	53.862	0.46674	53.665	53.489	53.955	-0.19739	-0.069712	0.00028405	NaN	45.952	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208850			56808	4111	39674	39739							0.06046972902856851
PALPRLQI	8	Unmodified	_PALPRLQI_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7455749511719	2	454.28982	906.565087	0.34815	0.00015816	-0.24517	-0.00011138	0.10298	4.6785E-05	454.28960924055514	53.873	0.72314	53.971	53.703	54.426	0.098015					50	20	3	0	0	0	0.027866	1	5780	5780		54.765	10.234	1	608830			56809	18480	39675	39740	62284	62284					0.10806671893703879
PALQLYLI	8	Unmodified	_PALQLYLI_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|65|3|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|65|3|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|65|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2371520996094	2	465.786579	929.558604	0.27792	0.00012945	-3.1014	-0.0014446	-2.8235	-0.0013151	465.7854183014319	27.96	0.25683	28.041	27.911	28.168	0.081291					7	5	2	0	0	0	0.027866	1	1540	1540		39.021	0	1	22327			56810	17715	39676	39741	62285	62285					0.09100733942329953
PALQSTVVEQD	11	Unmodified	_PALQSTVVEQD_					0	0	0			REV__ENST00000526589.5_1_1:236715018-236715174:+|nuORF	REV__ENST00000526589.5_1_1:236715018-236715174:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.8007202148438	2	593.801143	1185.58773	-1.1868	-0.00070472	1.8545	0.0011012	0.66769	0.00039648	593.8023054283966	35.942	2.4854	35.737	35.428	37.913	-0.20518					202	66	5	0	0	0	0.92638	1	2758	2758		50.034	2.3762	1	98507000	+		56811	34452	39677	39742	62286	62286					0.0023618170998815913
PALQSTVVEQD	11	Unmodified	_PALQSTVVEQD_					0	0	0			REV__ENST00000526589.5_1_1:236715018-236715174:+|nuORF	REV__ENST00000526589.5_1_1:236715018-236715174:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8019409179688	2	593.801143	1185.58773	-0.75176	-0.0004464	1.3818	0.00082053	0.63007	0.00037414	593.8020284979149	35.892	2.8005	35.675	35.391	38.191	-0.21661					234	75	6	0	0	0	0.90172	1	2781	2781		51.528	10.101	1	98136000	+		56812	34452	39677	39742	62287	62287					0.0023618170998815913
PALQSTVVEQD	11	Unmodified	_PALQSTVVEQD_					0	0	0			REV__ENST00000526589.5_1_1:236715018-236715174:+|nuORF	REV__ENST00000526589.5_1_1:236715018-236715174:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8013916015625	2	593.801143	1185.58773	-0.22649	-0.00013449	0.93541	0.00055545	0.70892	0.00042095	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.97516	1	2704	2704		42.338	1.258	1	111520000	+		56813	34452	39677	39742	62288	62288					0.0023618170998815913
PALRAGQR	8	Unmodified	_PALRAGQR_					0	0	0		ENST00000604430.1_1_16:29332285-29370594:+|nuORF	ENST00000604430.1_1_16:29332285-29370594:+|nuORF	ENST00000604430.1_1_16:29332285-29370594:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.75921630859375	2	434.759218	867.503883	-0.42092	-0.000183	0.59017	0.00025658	0.16925	7.3583E-05	434.7593793245515	21.563	1.6213	21.563	20.998	22.619	0					79	33	4	0	0	0	0.88442	1	677	677		52.299	0	1	1123500			56814	17555	39678	39743	62289	62289					0.06483159914284897
PALRSYGG	8	Unmodified	_PALRSYGG_					0	0	0		nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.71875	2	410.719227	819.423902	1.0893	0.0004474	-2.1056	-0.00086482	-1.0163	-0.00041743	410.7182657977767	95.455	1.742	95.459	94.878	96.62	0.0041122					98	40	4	0	0	0	1.0574	2	12044	12044;12077		26.796	0	1	2791300			56815	18152	39679	39744	62290;62291	62290					0.00696673520440072
PALSPRAR	8	Unmodified	_PALSPRAR_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.23785400390625	2	434.261594	866.508634	-0.16131	-7.0049E-05	0.72061	0.00031294	0.55931	0.00024289	434.26044471550915	34.497	0.33554	34.497	34.371	34.706	0					11	8	2	0	0	0	0.027866	1	2567	2567		23.042	0	1	42319	+		56816	24500	39680	39745	62292	62292					0.07004044057032388
PALTIKTAD	9	Unmodified	_PALTIKTAD_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.23687744140625	2	465.26875	928.522947	-1.2732	-0.0005924	1.9078	0.00088765	0.63459	0.00029526	465.26921429518484	28.927	0.41815	28.927	28.655	29.073	0					14	9	2	0	0	0	0.024506	1	1716	1716		30.504	14.03	1	159130	+		56817	27638	39681	39746	62293	62293					0.05582651694658125
PALTQHLTII	10	Unmodified	_PALTQHLTII_					0	0	0		ENST00000482108.1_2_7:94295726-94295804:+|nuORF	ENST00000482108.1_2_7:94295726-94295804:+|nuORF	ENST00000482108.1_2_7:94295726-94295804:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8297729492188	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	1.0122	1	10647	10647		44.377	0	1	1623500			56818	15246	39682	39747	62294	62294					0.10094577919812764
PALVEQGR	8	Unmodified	_PALVEQGR_					0	0	0			REV__ENSG00000073861|ENST00000177694|TBX21	REV__ENSG00000073861|ENST00000177694|TBX21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7590637207031	2	435.245609	868.476666	-0.4785	-0.00020827	2.9239	0.0012726	2.4454	0.0010644	435.2466041764391	21.401	0.48327	21.401	21.146	21.63	0					14	9	2	0	0	0	0.027866	1	666	666		47.916	0	1	12281	+		56819	20513	39683	39748	62295	62295					0.03716631583245089
PALYPLGSRQI	11	Unmodified	_PALYPLGSRQI_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2489013671875	3	405.567912	1213.68191	2.3335	0.00094638	-0.071292	-2.8914E-05	2.2622	0.00091747	405.56694212340386	20.887	0.63973	20.956	20.563	21.202	0.068901					17	12	2	0	0	0	0.024743	1	551	551		36.318	2.2311	1	34652			56820	2424	39684	39749	62296	62296					0.0836136532279852
PALYPLGSRQI	11	Unmodified	_PALYPLGSRQI_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	405.567912	1213.68191	0.061207	2.4823E-05	4.762	0.0019313	4.8232	0.0019561	405.5696435431372	20.684	0.43302	20.684	20.516	20.949	0	-0.12737	0.00065538	NaN	36.318	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25820			56821	2424	39684	39749							0.0836136532279852
PALYPLGSRQI	11	Unmodified	_PALYPLGSRQI_					0	0	0		nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1;ENSG00000102755|ENST00000282397|FLT1	nc|ENSG00000102755|P17948-4|FLT1	nc|ENSG00000102755|P17948-4|FLT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	405.567912	1213.68191	0.098463	3.9933E-05	5.1932	0.0021062	5.2917	0.0021461	405.5697506368461	20.894	0.37672	20.793	20.574	20.95	-0.10042	-0.017658	0.0011801	NaN	36.318	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26048			56822	2424	39684	39749							0.0836136532279852
PAMPTPLL	8	Unmodified	_PAMPTPLL_					0	0	0			REV__ENST00000380262.7_1_17:7836176-7836449:+|nuORF	REV__ENST00000380262.7_1_17:7836176-7836449:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2528381347656	2	420.238407	838.462261	-0.25205	-0.00010592	-0.91045	-0.00038261	-1.1625	-0.00048853	420.23828946882367	45.317	0.16135	45.317	45.181	45.342	0					5	4	2	0	0	0	0.027866	1	4379	4379		54.765	10.234	1	43559	+		56823	31469	39685	39750	62297	62297					0.036568431107411925
PAMWYPTGH	9	Unmodified	_PAMWYPTGH_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.240966796875	2	530.23947	1058.46439	0.56783	0.00030109	2.3469	0.0012444	2.9147	0.0015455	530.2406059221765	110.55	1.0768	110.4	109.91	110.98	-0.1469					89	41	3	0	0	0	0.88411	1	13539	13539		33.516	0.70317	1	70861	+		56824	27033	39686	39751	62298	62298					-0.06250728151485418
PANGPAGPGP	10	Unmodified	_PANGPAGPGP_					0	0	0		ENSG00000162068|ENST00000293973|NTN3	ENSG00000162068|ENST00000293973|NTN3	ENSG00000162068|ENST00000293973|NTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.7086181640625	2	417.70886	833.403166	0.55168	0.00023044	-1.2014	-0.00050183	-0.64971	-0.00027139	417.7080655695169	98.109	1.1415	98.119	97.771	98.913	0.010239					40	26	2	0	0	0	1.1237	1	12523	12523		23.042	2.5607	1	301490			56825	6916	39687	39752	62299	62299					-0.020199168592398564
PANLYISN	8	Unmodified	_PANLYISN_					0	0	0		RBMS1|p.T141A|1|0.21|ENSG00000153250|chr2:160303469-160303469|T/C|missense_variant	RBMS1|p.T141A|1|0.21|ENSG00000153250|chr2:160303469-160303469|T/C|missense_variant	RBMS1|p.T141A|1|0.21|ENSG00000153250|chr2:160303469-160303469|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.2318420410156	2	446.232168	890.449782	0.033022	1.4735E-05	-0.72532	-0.00032366	-0.6923	-0.00030893	446.23190028192755	101.14	1.7305	101.14	100.62	102.35	0					118	39	5	0	0	0	1.0106	1	12937	12937		35.618	2.8059	1	6954500			56826	19038	39688	39753	62300	62300					0.00017522972052574914
PANLYISN	8	Unmodified	_PANLYISN_					0	0	0		RBMS1|p.T141A|1|0.21|ENSG00000153250|chr2:160303469-160303469|T/C|missense_variant	RBMS1|p.T141A|1|0.21|ENSG00000153250|chr2:160303469-160303469|T/C|missense_variant	RBMS1|p.T141A|1|0.21|ENSG00000153250|chr2:160303469-160303469|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	446.23193359375	2	446.232168	890.449782	0.46896	0.00020926	-1.2353	-0.00055122	-0.76633	-0.00034196	446.23162918375465	101.61	1.585	101.48	100.95	102.53	-0.13156					112	36	5	0	0	0	1.043	1	12627	12627		30.504	0	1	5166600			56827	19038	39688	39753	62301	62301					0.00017522972052574914
PANPIPVIKN	10	Unmodified	_PANPIPVIKN_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;ENST00000555508.1_1_14:97029095-97031384:+|nuORF	ENSG00000090060|ENST00000216277|PAPOLA;ENST00000555508.1_1_14:97029095-97031384:+|nuORF	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165893554688	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	0.96965	1	10345	10345		49.442	8.6634	1	1297700			56828	1922;16685	39689	39754	62302	62302					0.09498308748334239
PANVTYLN	8	Unmodified	_PANVTYLN_					0	0	0			REV__GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant	REV__GDPD5|p.G588Afs*13|1|0.21|ENSG00000158555|chr11:75435562-75435562|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	446.2319030761719	2	446.232168	890.449782	0.30845	0.00013764	-1.3943	-0.00062219	-1.0859	-0.00048455	446.23152023452957	101.79	1.2282	101.62	101.15	102.37	-0.17178					92	28	5	0	0	0	1.0198	1	12598	12598		34.173	3.6689	1	4822100	+		56829	25205	39690	39755	62303	62303					0.00017522972052574914
PAPAPVPAV	9	Unmodified	_PAPAPVPAV_					0	0	0			REV__ENSG00000099995|ENST00000215793|SF3A1	REV__ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.74273681640625	2	409.742171	817.469789	1.3452	0.00055117	-1.3866	-0.00056814	-0.041429	-1.6975E-05	409.7416142990067	55.132	1.8846	55.132	54.723	56.608	0					153	52	5	0	0	0	0.084323	1	6067	6067		116.12	0	1	41511000	+		56830	21030	39691	39756	62304	62304					0.0537531870265866
PAPAPVPAV	9	Unmodified	_PAPAPVPAV_					0	0	0			REV__ENSG00000099995|ENST00000215793|SF3A1	REV__ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.7426452636719	2	409.742171	817.469789	0.35754	0.0001465	-0.41741	-0.00017103	-0.059874	-2.4533E-05	409.74201622447305	55.231	2.1527	55.081	54.641	56.794	-0.15036					153	59	5	0	0	0	0.48384	1	6131	6131		60.404	0	1	43821000	+		56831	21030	39691	39756	62305	62305					0.0537531870265866
PAPAPVPAV	9	Unmodified	_PAPAPVPAV_					0	0	0			REV__ENSG00000099995|ENST00000215793|SF3A1	REV__ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.7422790527344	2	409.742171	817.469789	0.21393	8.7657E-05	-0.227	-9.3012E-05	-0.013068	-5.3547E-06	409.7420664637176	55.02	1.7745	55.118	54.66	56.435	0.098015					150	48	5	0	0	0	0.22343	2	5942	5942;6037		85.909	0	1	41752000	+		56832	21030	39691	39756	62306;62307	62306					0.0537531870265866
PAPARTPAP	9	Unmodified	_PAPARTPAP_					0	0	0		ENST00000582478.5_1_17:80008786-80009642:-|nuORF;ENSG00000169733|ENST00000310496|RFNG	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2481994628906	2	439.248152	876.481751	-0.367	-0.00016121	0.13569	5.9602E-05	-0.23131	-0.0001016	439.24816198999156	33.403	2.0226	33.403	32.186	34.209	0					158	53	5	0	0	0	0.4752	1	2389	2389		60.972	2.19	1	10783000			56833	17180	39692	39757	62308	62308					0.038569354458559246
PAPAVKPK	8	Unmodified	_PAPAVKPK_					0	0	0			REV__nc|ENSG00000095139|P48444-2|ARCN1	REV__nc|ENSG00000095139|P48444-2|ARCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.2451477050781	2	404.257988	806.501424	0.7974	0.00032235	-0.2722	-0.00011004	0.52519	0.00021231	404.25777613148	32.078	0.99677	32.078	31.343	32.34	0					35	24	2	0	0	0	0.027866	1	2205	2205		13.775	0	1	141170	+		56834	20959	39693	39758	62309	62309					0.0904331145661672
PAPCRVPK	8	Unmodified	_PAPCRVPK_					0	0	0			REV__ENSG00000166278|ENST00000299367|C2	REV__ENSG00000166278|ENST00000299367|C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.23779296875	2	434.247098	866.479642	-0.51032	-0.0002216	2.2647	0.00098343	1.7544	0.00076182	434.24762938715315	34.408	0.22602	34.458	34.292	34.518	0.050255					10	5	2	0	0	0	0.027866	1	2495	2495		8.2313	0	1	88485	+		56835	25997	39694	39759	62310	62310					0.04106183436385891
PAPEGPHQV	9	Unmodified	_PAPEGPHQV_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7538146972656	2	466.235242	930.45593	0.34827	0.00016238	2.8137	0.0013118	3.1619	0.0014742	466.2364127188965	37.314	0.82632	37.314	37.042	37.869	0					41	22	2	0	0	0	0.024294	1	3075	3075		55.504	7.5886	1	1455000			56836	10379	39695	39760	62311	62311					-0.012079587964308303
PAPEKPAR	8	Unmodified	_PAPEKPAR_					0	0	0			REV__nc|ENSG00000140839|Q6UXF7-2|CLEC18B	REV__nc|ENSG00000140839|Q6UXF7-2|CLEC18B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.2386169433594	2	433.248152	864.481751	-0.16513	-7.154E-05	1.3129	0.00056882	1.1478	0.00049728	433.2484785464451	35.059	1.8914	35.103	34.247	36.139	0.04406					66	49	2	0	0	0	0.027866	1	2738	2738		14.865	8.9438	1	195950	+		56837	35367	39696	39761	62312	62312					0.04408935445837869
PAPGLALALTL	11	Unmodified	_PAPGLALALTL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.823692	1035.63283	-0.16606	-8.6156E-05	-3.0679	-0.0015917	-3.2339	-0.0016778	518.8216548752249	102.78	0.28948	102.78	102.5	102.79	-0.0046005					9	6	2	0	0	0	0.024752	1	13060	13060		40.778	11.629	1	146450			56838	8381	39697	39762	62313	62313					0.11644077033838585
PAPHKTQP	8	Unmodified	_PAPHKTQP_					0	0	0			REV__TLE4|p.R13K|1|0.16|ENSG00000106829|chr9:79572828-79572828|G/A|missense_variant	REV__TLE4|p.R13K|1|0.16|ENSG00000106829|chr9:79572828-79572828|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.26361083984375	2	438.240327	874.466101	-0.23663	-0.0001037	2.2176	0.00097186	1.981	0.00086816	438.2418874969725	40.782	0.32848	40.557	40.442	40.77	-0.225					13	8	2	0	0	0	0.027866	1	3581	3581		40.573	27.613	1	93956	+		56839	37696	39698	39763	62314	62314					0.023846489288075645
PAPHKTQP	8	Unmodified	_PAPHKTQP_					0	0	0			REV__TLE4|p.R13K|1|0.16|ENSG00000106829|chr9:79572828-79572828|G/A|missense_variant	REV__TLE4|p.R13K|1|0.16|ENSG00000106829|chr9:79572828-79572828|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	438.240327	874.466101	1.0841	0.0004751	-0.43106	-0.00018891	0.65304	0.00028619	438.2399264078464	40.69	0.14265	40.567	40.476	40.618	-0.12317	0.0051554	-0.0012327	NaN	40.573	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49408	+		56840	37696	39698	39763							0.023846489288075645
PAPHPAPAL	9	Unmodified	_PAPHPAPAL_					0	0	0			REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	435.7453308105469	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.575	1	35.575	35.075	36.075	0								0	0	0	0.41653	1	2750	2750		60.404	0	1		+		56841	29598	39699	39764	62315	62315					0.03597836934170573
PAPHPAPAL	9	Unmodified	_PAPHPAPAL_					0	0	0			REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	435.7452697753906	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.409	1	35.387	34.887	35.887	-0.021763								0	0	0	0.41653	1	2709	2709		60.404	0	1		+		56842	29598	39699	39764	62316	62316					0.03597836934170573
PAPHPAPAL	9	Unmodified	_PAPHPAPAL_					0	0	0			REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	435.7451477050781	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.49	1	35.468	34.968	35.968	-0.021763								0	0	0	0.12943	1	2721	2721		85.909	13.289	1		+		56843	29598	39699	39764	62317	62317					0.03597836934170573
PAPHPAPAL	9	Unmodified	_PAPHPAPAL_					0	0	0			REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	435.74493408203125	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.578	1	35.556	35.056	36.056	-0.021763								0	0	0	0.52778	1	2734	2734		49.211	0	1		+		56844	29598	39699	39764	62318	62318					0.03597836934170573
PAPHPAPAL	9	Unmodified	_PAPHPAPAL_					0	0	0			REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	435.7450256347656	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.485	1	35.529	35.029	36.029	0.04406								0	0	0	0.41653	1	2681	2681		60.404	11.193	1		+		56845	29598	39699	39764	62319	62319					0.03597836934170573
PAPIPDLKVF	10	Unmodified	_PAPIPDLKVF_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000557391.1_1_14:24028960-24029655:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.8224487304688	2	548.823692	1095.63283	-0.25317	-0.00013895	-0.22793	-0.00012509	-0.4811	-0.00026404	548.823461295308	57.122	1.0902	56.897	56.582	57.672	-0.22479					82	28	4	0	0	0	0.60198	1	6192	6192		76.774	4.8967	1	5297500			56846	10532	39700	39765	62320	62320					0.0888407703384928
PAPIVWPK	8	Unmodified	_PAPIVWPK_					0	0	0			REV__ENSG00000167094|ENST00000373289|TTC16	REV__ENSG00000167094|ENST00000373289|TTC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.7873840332031	2	454.273638	906.532724	-0.52805	-0.00023988	3.2274	0.0014661	2.6993	0.0012262	454.27548884046166	20.73	0.59554	20.507	20.266	20.861	-0.22344					17	11	2	0	0	0	0.027866	1	549	549		23.037	14.214	1	35033	+		56847	26101	39701	39766	62321	62321					0.07571884490698721
PAPKDRPP	8	Unmodified	_PAPKDRPP_					0	0	0			REV__nc|ENSG00000085840|Q9BZK8|OCR1	REV__nc|ENSG00000085840|Q9BZK8|OCR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2480163574219	2	439.248152	876.481751	0.71219	0.00031283	-0.91331	-0.00040117	-0.20113	-8.8344E-05	439.24770877008893	33.204	2.5273	33.26	31.997	34.524	0.056568					165	65	4	0	0	0	0.845	1	2303	2303		55.504	4.1688	1	10061000	+		56848	36488	39702	39767	62322	62322					0.03856935445844556
PAPLFPPLA	9	Unmodified	_PAPLFPPLA_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.7734680175781	2	461.773471	921.53239	0.22097	0.00010204	-0.38092	-0.0001759	-0.15996	-7.3864E-05	461.77316980394227	101.93	0.68788	101.76	101.52	102.2	-0.17178					32	16	3	0	0	0	0.80342	1	12661	12661		39.021	0.21535	1	1028600			56849	10106	39703	39768	62323	62323					0.06848464770837381
PAPLFVITV	9	Unmodified	_PAPLFVITV_					0	0	0			REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF	REV__ENST00000369583.3_1_10:112270861-112271212:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.75286865234375	2	478.794404	955.574254	-0.26732	-0.00012799	2.225	0.0010653	1.9577	0.00093734	478.79464079647164	32.542	0.21874	32.554	32.45	32.669	0.011795					9	5	2	0	0	0	0.024357	1	2245	2245		26.796	0	1	39435	+		56850	31095	39704	39769	62324	62324					0.09469020459380317
PAPLLRWAP	9	Unmodified	_PAPLLRWAP_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7850646972656	2	510.803094	1019.59164	-1.0491	-0.00053587	-1.9159	-0.00097865	-2.965	-0.0015145	510.8010655627805	41.097	0.45629	40.867	40.624	41.08	-0.23029					26	11	4	0	0	0	0.024517	1	3588	3588		19.36	0	1	343320			56851	12698	39705	39770	62325	62325					0.08262360785022338
PAPLLRWAP	9	Unmodified	_PAPLLRWAP_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.803094	1019.59164	-0.087124	-4.4503E-05	-4.0269	-0.0020569	-4.114	-0.0021014	510.80101317077435	40.762	0.6696	40.762	40.381	41.051	0	-0.056349	0.00014444	NaN	19.36	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856500			56852	12698	39705	39770							0.08262360785022338
PAPLLRWAP	9	Unmodified	_PAPLLRWAP_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.803094	1019.59164	0.56927	0.00029078	-4.7781	-0.0024407	-4.2088	-0.0021499	510.80060099425754	40.908	0.85355	40.785	40.232	41.086	-0.12317	-0.033444	-0.00062298	NaN	19.36	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856680			56853	12698	39705	39770							0.08262360785022338
PAPLLRWAP	9	Unmodified	_PAPLLRWAP_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.803094	1019.59164	-0.46094	-0.00023545	-3.8454	-0.0019643	-4.3064	-0.0021997	510.8011397523228	40.965	1.2766	40.988	40.013	41.29	0.023003	0.16928	0.0003298	NaN	19.36	45	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	862870			56854	12698	39705	39770							0.08262360785022338
PAPLLRWAP	9	Unmodified	_PAPLLRWAP_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.803094	1019.59164	-0.46338	-0.0002367	-1.6592	-0.0008475	-2.1225	-0.0010842	510.8010672565526	40.817	0.49341	40.681	40.454	40.947	-0.13553	-0.13685	0.0025633	NaN	19.36	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314370			56855	12698	39705	39770							0.08262360785022338
PAPLLRWAP	9	Unmodified	_PAPLLRWAP_					0	0	0		ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	ENST00000357578.7_2_6:24495232-24502797:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.803094	1019.59164	-0.37932	-0.00019376	-2.3693	-0.0012103	-2.7487	-0.001404	510.80128784853576	41.055	0.64326	40.827	40.439	41.082	-0.2278	0.0088147	0.0018378	NaN	19.36	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326780			56856	12698	39705	39770							0.08262360785022338
PAPPAPPAPG	10	Unmodified	_PAPPAPPAPG_					0	0	0			REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.7451477050781	2	436.237253	870.459953	-0.90914	-0.0003966	-3.6956	-0.0016122	-4.6048	-0.0020088	436.2355748059028	35.631	0.46442	35.609	35.386	35.851	-0.021763					19	11	2	0	0	0	0.03519	1	2721	2721		44.531	0	1	153910	+		56857	37168	39706	39771	62326	62326					0.019541306972769235
PAPPSDRGAL	10	Unmodified	_PAPPSDRGAL_					0	0	0			REV__ENST00000397147.6_1_22:37257112-37260979:+|nuORF	REV__ENST00000397147.6_1_22:37257112-37260979:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.7635192871094	2	490.761623	979.508694	0.27428	0.00013461	4.188	0.0020553	4.4623	0.0021899	490.7635521233026	18.113	0.54061	17.982	17.762	18.302	-0.13147					18	10	3	0	0	0	0.88896	1	244	244		54.776	5.3348	1	95197	+		56858	31762	39707	39772	62327	62327					0.01811999266362818
PAPPSDRGAL	10	Unmodified	_PAPPSDRGAL_					0	0	0			REV__ENST00000397147.6_1_22:37257112-37260979:+|nuORF	REV__ENST00000397147.6_1_22:37257112-37260979:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.761623	979.508694	3.472	0.0017039	0.49254	0.00024172	3.9645	0.0019456	490.7619648399844	17.916	0.39047	17.916	17.746	18.136	0	-0.032948	-0.0022581	NaN	54.776	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71421	+		56859	31762	39707	39772							0.01811999266362818
PAPPSDRGAL	10	Unmodified	_PAPPSDRGAL_					0	0	0			REV__ENST00000397147.6_1_22:37257112-37260979:+|nuORF	REV__ENST00000397147.6_1_22:37257112-37260979:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	490.761623	979.508694	0.27428	0.00013461	4.188	0.0020553	4.4623	0.0021899	490.7635521233026	18.113	0.54061	17.982	17.762	18.302	-0.13147	0.032948	0.001369	NaN	54.776	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95197	+		56860	31762	39707	39772							0.01811999266362818
PAPQIGQIH	9	Unmodified	_PAPQIGQIH_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3-2|SAP130	REV__nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2929382324219	2	480.766709	959.518865	0.40522	0.00019482	1.3483	0.00064824	1.7536	0.00084305	480.76728024142557	77.827	0.25234	77.565	77.442	77.694	-0.26202					8	5	2	0	0	0	0.024457	1	9278	9278		37.159	0	1	95532	+		56861	23674	39708	39773	62328	62328					0.03748606991609904
PAPQLRWSVC	10	Unmodified	_PAPQLRWSVC_					0	0	0		ENST00000303329.8_1_15:80886456-80886687:+|nuORF	ENST00000303329.8_1_15:80886456-80886687:+|nuORF	ENST00000303329.8_1_15:80886456-80886687:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.821044921875	2	578.800226	1155.5859	-0.97324	-0.00056331	3.8853	0.0022488	2.912	0.0016855	579.3038614319346	23.131	0.36887	22.951	22.743	23.112	-0.17989					11	7	2	0	0	0	0.03519	1	867	867		47.657	9.8458	1	34556			56862	11968	39709	39774	62329	62329					0.014328942110751086
PAPSEPVLPL	10	Unmodified	_PAPSEPVLPL_					0	0	0		ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7280578613281	2	510.292225	1018.5699	0.33264	0.00016975	-1.7387	-0.00088724	-1.406	-0.00071749	510.29142823497995	55.205	0.4154	55.205	55.049	55.464	0					22	11	3	0	0	0	0.03519	1	6064	6064		29.15	3.6994	1	415540			56863	8668	39710	39775	62330	62330					0.061355112458159056
PAPSTSADKV	10	Unmodified	_PAPSTSADKV_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-2|NASP;ENST00000534101.1_1_1:46049764-46072228:+|nuORF;ENST00000464190.6_1_1:46049764-46072280:+|nuORF	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.27984619140625	2	486.753464	971.492375	-0.19353	-9.4202E-05	-0.1025	-4.9893E-05	-0.29603	-0.00014409	486.7533561521053	50.839	0.45824	50.839	50.609	51.067	0					21	12	3	0	0	0	0.03519	1	5330	5330		42.396	5.3677	1	316650			56864	4651	39711	39776	62331	62331					0.00548873309605824
PAPTIRARP	9	Unmodified	_PAPTIRARP_					0	0	0			REV__FGF23|p.M199I|1|0.09|ENSG00000118972|chr12:4370502-4370502|C/T|missense_variant	REV__FGF23|p.M199I|1|0.09|ENSG00000118972|chr12:4370502-4370502|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.27056884765625	2	489.795801	977.577048	-0.57686	-0.00028255	-2.9784	-0.0014588	-3.5553	-0.0017414	489.7936232550389	38.923	0.46342	38.824	38.591	39.054	-0.098755					16	12	2	0	0	0	0.024021	1	3295	3295		49.442	3.4693	1	287520	+		56865	36039	39712	39777	62332	62332					0.08736288636885092
PAPTSAPPEL	10	Unmodified	_PAPTSAPPEL_					0	0	0			REV__ENSG00000167595|ENST00000646935|PROSER3	REV__ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.25775146484375	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.0781	1	13543	13543		35.618	5.1146	1	6618800	+		56866	26158	39713	39778	62333	62333					0.012100613149868877
PAPTSAPPEL	10	Unmodified	_PAPTSAPPEL_					0	0	0			REV__ENSG00000167595|ENST00000646935|PROSER3	REV__ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.258056640625	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	1.0781	1	13422	13422		35.618	0	1	7056700	+		56867	26158	39713	39778	62334	62334					0.012100613149868877
PAPTSAPPEL	10	Unmodified	_PAPTSAPPEL_					0	0	0			REV__ENSG00000167595|ENST00000646935|PROSER3	REV__ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.25811767578125	2	490.258382	978.502212	-0.31257	-0.00015324	-0.53928	-0.00026439	-0.85186	-0.00041763	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	1.0781	2	13132	13132;13170		35.618	2.4947	1	4889800	+		56868	26158	39713	39778	62335;62336	62335					0.012100613149868877
PAPTSAPPEL	10	Unmodified	_PAPTSAPPEL_					0	0	0			REV__ENSG00000167595|ENST00000646935|PROSER3	REV__ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2577209472656	2	490.258382	978.502212	-0.68729	-0.00033695	-0.25279	-0.00012393	-0.94008	-0.00046088	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	1.089	1	13159	13159		34.173	3.6689	1	5001000	+		56869	26158	39713	39778	62337	62337					0.012100613149868877
PAPTSAPPEL	10	Unmodified	_PAPTSAPPEL_					0	0	0			REV__ENSG00000167595|ENST00000646935|PROSER3	REV__ENSG00000167595|ENST00000646935|PROSER3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2578430175781	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	1.0271	1	13121	13121		42.396	5.237	1	4976900	+		56870	26158	39713	39778	62338	62338					0.012100613149868877
PAPVSKFLH	9	Unmodified	_PAPVSKFLH_					0	0	0		ENST00000323798.7_1_19:49472237-49472516:-|nuORF	ENST00000323798.7_1_19:49472237-49472516:-|nuORF	ENST00000323798.7_1_19:49472237-49472516:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7667236328125	2	498.287277	994.560001	-0.32749	-0.00016318	-3.603	-0.0017954	-3.9305	-0.0019585	498.2850988431206	41.347	0.53471	41.211	40.908	41.443	-0.13553					22	13	2	0	0	0	0.024294	1	3682	3682		65.803	25.231	1	613940			56871	12245	39714	39779	62339	62339					0.06250368031078324
PAPYQGYYGLN	11	Unmodified	_PAPYQGYYGLN_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2403564453125	3	414.864506	1241.57169	-0.43469	-0.00018034	-0.39688	-0.00016465	-0.83157	-0.00034499	415.19856862145735	30.41	0.41767	30.41	30.216	30.634	0					18	9	3	0	0	0	0.024759	1	1926	1926		29.551	11.718	1	50658	+		56872	24823	39715	39780	62340	62340					-0.03943479736221889
PAQKKLKEMKW	11	Unmodified	_PAQKKLKEMKW_					0	0	0			REV__nc|ENSG00000185585|Q68BL7-2|OLFML2A	REV__nc|ENSG00000185585|Q68BL7-2|OLFML2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7722473144531	3	462.935719	1385.78533	-0.39957	-0.00018498	3.5126	0.0016261	3.113	0.0014411	462.9370261590014	26.276	1.2505	26.253	25.909	27.16	-0.023088					94	30	5	0	0	0	0.02484	1	1373	1373		22.562	13.35	1	1301600	+		56873	27774	39716	39781	62341	62341					0.1078652943895122
PAQPAAWAATP	11	Unmodified	_PAQPAAWAATP_					0	0	0		CDC42EP4|p.E236Rfs*146|1|0.18|ENSG00000179604|chr17:73285795-73285795|C/-|frameshift_variant	CDC42EP4|p.E236Rfs*146|1|0.18|ENSG00000179604|chr17:73285795-73285795|C/-|frameshift_variant	CDC42EP4|p.E236Rfs*146|1|0.18|ENSG00000179604|chr17:73285795-73285795|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7927856445312	2	540.777274	1079.53999	0.10296	5.5677E-05	3.746	0.0020258	3.849	0.0020815	540.7781786076542	78.409	0.20329	78.217	78.135	78.339	-0.1921					6	4	2	0	0	0	0.024736	1	9681	9681		29.17	8.2231	1	45533			56874	234	39717	39782	62342	62342					0.0034057230043345044
PAQRQESLT	9	Unmodified	_PAQRQESLT_					0	0	0		ENST00000503766.5_1_6:43189272-43189419:+|nuORF	ENST00000503766.5_1_6:43189272-43189419:+|nuORF	ENST00000503766.5_1_6:43189272-43189419:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7963256835938	2	515.269813	1028.52507	-0.9073	-0.00046751	3.2423	0.0016706	2.3349	0.0012031	515.2717272938079	35.574	0.55453	35.618	35.343	35.898	0.04406					29	13	3	0	0	0	0.024477	1	2683	2683		27.882	0	1	358060			56875	15699	39718	39783	62343	62343					0.011950804324669662
PAQRVWSI	8	Unmodified	_PAQRVWSI_					0	0	0			REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D	REV__nc|ENSG00000280411|A0A0B4J2H0|IGHV1-69D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7681884765625	2	478.769252	955.52395	-0.31637	-0.00015147	-1.1299	-0.00054095	-1.4462	-0.00069242	478.7684856661991	28.472	1.3363	28.472	27.924	29.26	0					80	32	3	0	0	0	0.91956	1	1653	1653		49.442	3.4896	1	1692200	+		56876	37122	39719	39784	62344	62344					0.0444091085423679
PAQSRTNLP	9	Unmodified	_PAQSRTNLP_					0	0	0			REV__ENSG00000100292|ENST00000216117|HMOX1	REV__ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2668151855469	2	492.267073	982.519593	-0.74711	-0.00036778	0.17051	8.3935E-05	-0.5766	-0.00028384	492.2670686440371	28.47	1.3358	28.47	28.151	29.487	0					69	32	3	0	0	0	0.39228	1	1686	1686		66.429	2.222	1	7784700	+		56877	21082	39720	39785	62345	62345					0.027634016406636874
PAQSRTNLP	9	Unmodified	_PAQSRTNLP_					0	0	0			REV__ENSG00000100292|ENST00000216117|HMOX1	REV__ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2667541503906	2	492.267073	982.519593	-0.45406	-0.00022352	-0.34007	-0.00016741	-0.79413	-0.00039092	492.26692916929613	28.107	0.87359	28.188	27.91	28.784	0.080811					51	20	4	0	0	0	0.39228	1	1585	1585		66.429	6.1353	1	6361500	+		56878	21082	39720	39785	62346	62346					0.027634016406636874
PARAQARL	8	Unmodified	_PARAQARL_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7680969238281	2	441.767043	881.519533	-0.17194	-7.5957E-05	2.3036	0.0010177	2.1317	0.0009417	441.7681216130439	102.94	1.5731	102.81	102.45	104.03	-0.12783					93	37	5	0	0	0	1.0239	1	12862	12862		33.516	1.5607	1	25733000	+		56879	23961	39721	39786	62347	62347					0.07403446431317207
PARDIRCE	8	Unmodified	_PARDIRCE_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7878112792969	2	480.240001	958.465449	-0.81913	-0.00039338	0.79468	0.00038163	-0.024455	-1.1744E-05	480.24020103963744	21.863	1.6468	21.935	20.91	22.556	0.071487					48	33	2	0	0	0	0.027866	1	712	712		44.117	9.9443	1	46903			56880	897	39722	39787	62348	62348					-0.01544513782573631
PARGGAPIMS	10	Unmodified	_PARGGAPIMS_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7527770996094	2	478.752744	955.490935	-0.27703	-0.00013263	-0.32567	-0.00015592	-0.6027	-0.00028855	478.752693375278	32.234	0.77337	32.297	31.879	32.653	0.062885					62	19	4	0	0	0	0.71272	1	2170	2170		66.429	7.6473	1	18743000	+		56881	19984	39723	39788	62349	62349					0.011409607398604749
PARHLTLTL	9	Unmodified	_PARHLTLTL_					0	0	0			REV__ENST00000395473.6_2_17:25976035-25976554:+|nuORF	REV__ENST00000395473.6_2_17:25976035-25976554:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2644348144531	2	511.311284	1020.60801	-0.69937	-0.0003576	1.8516	0.00094675	1.1522	0.00058916	511.3120139460608	81.121	0.39761	81.121	80.861	81.258	0					13	9	2	0	0	0	0.024427	1	10114	10114		51.335	14.176	1	32505	+		56882	31699	39724	39789	62350	62350					0.09853441951122477
PARLLPLL	8	Unmodified	_PARLLPLL_					0	0	0		ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.8028259277344	2	446.802563	891.590573	0.54593	0.00024392	-0.31042	-0.0001387	0.23551	0.00010523	446.80224837639446	71.629	1.0338	71.629	71.339	72.373	0					59	26	3	0	0	0	0.44541	1	8688	8688		90.939	0	1	1886700			56883	14170	39725	39790	62351	62351					0.14044146416131298
PARLLPLL	8	Unmodified	_PARLLPLL_					0	0	0		ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	446.802563	891.590573	0.68138	0.00030444	-0.44614	-0.00019934	0.23523	0.0001051	446.80223042312	71.96	0.86406	71.672	71.39	72.254	-0.28857	0.0013374	-0.00012393	NaN	90.939	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1673700			56884	14170	39725	39790							0.14044146416131298
PARLLPLL	8	Unmodified	_PARLLPLL_					0	0	0		ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	446.802563	891.590573	0.3362	0.00015022	-0.17724	-7.919E-05	0.15897	7.1027E-05	446.80235561056344	71.699	0.97589	71.71	71.396	72.372	0.010735	0.039624	0.00011636	NaN	90.939	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1828800			56885	14170	39725	39790							0.14044146416131298
PARLPAAPA	9	Unmodified	_PARLPAAPA_					0	0	0		ENST00000427004.5_1_6:33378256-33380059:+|nuORF	ENST00000427004.5_1_6:33378256-33380059:+|nuORF	ENST00000427004.5_1_6:33378256-33380059:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.25872802734375	2	432.25852	862.502486	-0.11504	-4.9728E-05	0.39639	0.00017134	0.28135	0.00012162	432.2585622318503	35.721	1.2577	35.765	35.192	36.45	0.04406					71	33	4	0	0	0	0.75282	1	2711	2711		42.474	1.9018	1	2392000			56886	14099	39726	39791	62352	62352					0.06573525825490378
PARNPSSPE	9	Unmodified	_PARNPSSPE_					0	0	0		ENST00000592267.1_1_17:43342005-43351146:-|nuORF;ENSG00000006062|ENST00000344686|MAP3K14	ENST00000592267.1_1_17:43342005-43351146:-|nuORF	ENST00000592267.1_1_17:43342005-43351146:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77703857421875	2	477.735606	953.456658	0.051123	2.4423E-05	0.13196	6.3043E-05	0.18309	8.7467E-05	477.73565758984614	27.928	0.67317	27.928	27.689	28.362	0					25	16	2	0	0	0	0.024374	1	1562	1562		32.812	15.447	1	135590			56887	783	39727	39792	62353	62353					-0.021931641473884156
PARNPSSPE	9	Unmodified	_PARNPSSPE_					0	0	0		ENST00000592267.1_1_17:43342005-43351146:-|nuORF;ENSG00000006062|ENST00000344686|MAP3K14	ENST00000592267.1_1_17:43342005-43351146:-|nuORF	ENST00000592267.1_1_17:43342005-43351146:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.735606	953.456658	-0.85452	-0.00040823	0.22413	0.00010708	-0.63038	-0.00030116	477.7360506355275	27.763	0.45564	27.595	27.273	27.729	-0.16816	-0.1435	-6.8615E-05	NaN	32.812	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70586			56888	783	39727	39792							-0.021931641473884156
PARPLGLVAP	10	Unmodified	_PARPLGLVAP_					0	0	0			REV__ENST00000521198.6_1_8:67624835-67705866:+|nuORF	REV__ENST00000521198.6_1_8:67624835-67705866:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2923889160156	2	495.808377	989.6022	-0.55907	-0.00027719	-2.4478	-0.0012136	-3.0068	-0.0014908	495.8074190494955	68.502	0.2406	68.24	68.142	68.382	-0.26166					6	5	2	0	0	0	0.03519	1	7922	7922		31.955	7.7521	1	118730	+		56889	34311	39728	39793	62354	62354					0.1069834343944649
PARPPVSDA	9	Unmodified	_PARPPVSDA_					0	0	0			REV__ENST00000609937.1_1_4:141677826-141678255:+|nuORF	REV__ENST00000609937.1_1_4:141677826-141678255:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.23297119140625	2	455.243067	908.47158	-0.33205	-0.00015116	-1.8359	-0.00083579	-2.168	-0.00098695	455.2418146572001	29.936	0.50473	29.691	29.4	29.905	-0.24415					18	11	2	0	0	0	0.024021	1	1838	1838		58.782	0	1	38170	+		56890	35990	39729	39794	62355	62355					0.013683277206041566
PARPSPSSP	9	Unmodified	_PARPSPSSP_					0	0	0			REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2351989746094	2	448.235242	894.45593	-0.24633	-0.00011041	-0.054041	-2.4223E-05	-0.30037	-0.00013463	448.23521005210773	26.645	2.1698	26.622	25.172	27.342	-0.023088					147	53	5	0	0	0	0.082191	2	1396	1357;1396		116.9	12.157	1	8247300	+		56891	37745	39730	39795	62356;62357	62357					0.004480412035718473
PARPSPSSP	9	Unmodified	_PARPSPSSP_					0	0	0			REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.23516845703125	2	448.235242	894.45593	-0.14058	-6.3012E-05	-0.096153	-4.3099E-05	-0.23673	-0.00010611	448.2351985977982	26.303	2.1637	26.384	25.008	27.171	0.081293					144	52	4	0	0	0	0.033448	2	1265	1265;1313		138.83	9.1429	1	7178700	+		56892	37745	39730	39795	62358;62359	62358					0.004480412035718473
PARQGLRA	8	Unmodified	_PARQGLRA_					0	0	0		ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7591247558594	2	434.759218	867.503883	-0.024733	-1.0753E-05	0.12999	5.6513E-05	0.10525	4.576E-05	434.759197201521	21.498	1.5447	21.569	21.106	22.651	0.071487					78	31	4	0	0	0	0.88442	1	612	612		52.299	0	1	1542400			56893	12553	39731	39796	62360	62360					0.06483159914284897
PARRAERRDAR	11	Unmodified	_PARRAERRDAR_					0	0	0		ENST00000505648.5_1_6:86284082-86303777:-|nuORF	ENST00000505648.5_1_6:86284082-86303777:-|nuORF	ENST00000505648.5_1_6:86284082-86303777:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2533264160156	3	451.923864	1352.74976	-0.36364	-0.00016434	-4.1895	-0.0018933	-4.5531	-0.0020577	452.2564292242343	28.01	0.57985	28.01	27.653	28.232	0					20	14	2	0	0	0	0.024734	1	1599	1599		30.139	22.739	1	351620			56894	15731	39732	39797	62361	62361					0.08749628026157552
PARRLPGPG	9	Unmodified	_PARRLPGPG_					0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.7740783691406	2	460.774868	919.535184	-0.83383	-0.00038421	0.68826	0.00031713	-0.14558	-6.7079E-05	460.77507103377	24.069	0.78853	24.022	23.699	24.487	-0.047146					48	17	4	0	0	0	0.80658	1	993	993		38.806	0	1	1690600	+		56895	20426	39733	39798	62362	62362					0.07219732948374258
PARRPRIN	8	Unmodified	_PARRPRIN_					0	0	0			REV__ENST00000261183.7_1_12:76953270-76953561:-|nuORF	REV__ENST00000261183.7_1_12:76953270-76953561:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.7608337402344	2	490.299042	978.583531	0.041834	2.0511E-05	3.5037	0.0017179	3.5456	0.0017384	490.30064689418197	86.538	1.5334	86.493	85.904	87.437	-0.045097					53	35	3	0	0	0	0.027866	1	10878	10878		26.796	0	1	172960	+		56896	29610	39734	39799	62363	62363					0.09338226588261023
PARTLPLSP	9	Unmodified	_PARTLPLSP_					0	0	0			REV__nc|ENSG00000130283|P27539|GDF1	REV__nc|ENSG00000130283|P27539|GDF1	MSMS	OPSCC_39_ClassI_Rep-3	3	476.2859802246094	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.99	1	101.99	101.49	102.49	-0.0054474								0	0	0	0.66481	1	12986	12986		27.882	1.0861	1		+		56897	36652	39735	39800	62364	62364					0.07766064168458797
PARTNSSA	8	Unmodified	_PARTNSSA_					0	0	0			REV__ENST00000416807.1_1_2:131186132-131186396:+|nuORF	REV__ENST00000416807.1_1_2:131186132-131186396:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.2052001953125	2	402.203941	802.39333	0.92344	0.00037141	3.3216	0.001336	4.2451	0.0017074	402.2052180634848	96.013	2.0859	95.876	95.199	97.285	-0.1367					136	47	4	0	0	0	1.0338	1	11881	11881		31.955	0	1	5342800	+		56898	32085	39736	39801	62365	62365					-0.015771048646229247
PARVPPSGP	9	Unmodified	_PARVPPSGP_					0	0	0		ENST00000498682.2_3_7:150105208-150105568:+|nuORF	ENST00000498682.2_3_7:150105208-150105568:+|nuORF	ENST00000498682.2_3_7:150105208-150105568:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.24822998046875	2	439.248152	876.481751	0.71219	0.00031283	-0.91331	-0.00040117	-0.20113	-8.8344E-05	439.24770877008893	33.204	2.5273	33.26	31.997	34.524	0.056568					165	65	4	0	0	0	0.33245	1	2352	2352		71.296	4.8664	1	10061000			56899	15628	39737	39802	62366	62366					0.038569354458559246
PARWIGAPM	9	Unmodified	_PARWIGAPM_					0	0	0			REV__ENST00000517489.1_1_8:99057319-99057484:-|nuORF	REV__ENST00000517489.1_1_8:99057319-99057484:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7739562988281	2	499.765655	997.516756	-0.46613	-0.00023296	0.94935	0.00047445	0.48321	0.00024149	500.26776409113944	27.217	1.2662	27.204	26.456	27.722	-0.012983					49	32	2	0	0	0	0.024443	1	1403	1403		19.36	0	1	105980	+		56900	34216	39738	39803	62367	62367					0.01789854982143879
PASAKPVERRK	11	Unmodified	_PASAKPVERRK_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.869140625	2	619.870028	1237.7255	-1.0156	-0.00062956	0.033515	2.0775E-05	-0.98212	-0.00060879	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.0344	1	11994	11994		29.17	2.4771	1	4459000			56901	9199	39739	39804	62368	62368					0.11614974819917734
PASAKPVERRK	11	Unmodified	_PASAKPVERRK_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8695678710938	2	619.870028	1237.7255	-0.47108	-0.00029201	-0.44611	-0.00027653	-0.91719	-0.00056854	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.0344	2	11727	11715;11727		29.17	4.9673	1	4765600			56902	9199	39739	39804	62369;62370	62370					0.11614974819917734
PASAPAAGPAV	11	Unmodified	_PASAPAAGPAV_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7448425292969	2	454.745442	907.476331	0.44258	0.00020126	-1.8786	-0.00085427	-1.436	-0.00065301	454.7444987549907	101.14	1.784	101.14	100.7	102.48	0					105	40	5	0	0	0	1.0119	1	12932	12932		34.173	6.2903	1	4485300			56903	4783	39740	39805	62371	62371					0.01889211863363016
PASDLKPL	8	Unmodified	_PASDLKPL_					0	0	0			REV__ENSG00000124557|ENST00000684113|BTN1A1	REV__ENSG00000124557|ENST00000684113|BTN1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7400817871094	2	420.744911	839.475269	-0.28008	-0.00011784	-3.1067	-0.0013071	-3.3867	-0.0014249	420.7432954832905	22.949	0.36298	22.889	22.663	23.026	-0.06086					10	7	2	0	0	0	0.027866	1	845	845		35.201	0	1	35210	+		56904	22771	39741	39806	62372	62372					0.04910997494471303
PASELTTV	8	Unmodified	_PASELTTV_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.7425537109375	2	409.218726	816.422899	0.15045	6.1567E-05	1.2573	0.00051452	1.4078	0.00057608	409.21651775611076	55.115	0.75378	55.213	54.881	55.634	0.098015					29	20	3	0	0	0	0.027866	1	6037	6037		42.474	0	1	251460	+		56905	23932	39742	39807	62373	62373					0.007344143608406739
PASKNRVH	8	Unmodified	_PASKNRVH_					0	0	0		ENST00000435050.1_1_7:73246270-73246411:+|nuORF	ENST00000435050.1_1_7:73246270-73246411:+|nuORF	ENST00000435050.1_1_7:73246270-73246411:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7567443847656	2	454.756675	907.498798	-0.29698	-0.00013505	0.41261	0.00018764	0.11563	5.2585E-05	454.7567779921066	21.367	0.86796	21.367	21.097	21.965	0					44	17	3	0	0	0	1.0239	1	651	651		33.516	3.0119	1	257300			56906	14256	39743	39808	62374	62374					0.041348560516553334
PASKTSPVNL	10	Unmodified	_PASKTSPVNL_					0	0	0		nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6;nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000110693|P35712-4|SOX6	nc|ENSG00000110693|P35712-4|SOX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3131103515625	2	507.284931	1012.55531	-0.31864	-0.00016164	-0.049012	-2.4863E-05	-0.36765	-0.0001865	507.2848526329952	64.286	0.32832	64.023	63.827	64.155	-0.2626					13	8	2	0	0	0	0.03519	1	7538	7538		37.812	0	1	80530			56907	3055	39744	39809	62375	62375					0.04953439097653245
PASLRKGP	8	Unmodified	_PASLRKGP_					0	0	0			REV__nc|ENSG00000004777|O14559-11|ARHGAP33	REV__nc|ENSG00000004777|O14559-11|ARHGAP33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.9264831542969	2	413.250695	824.486836	0.19512	8.0635E-05	-2.1548	-0.00089046	-1.9596	-0.00080982	413.2497565137874	31.341	0.57194	31.353	31.17	31.742	0.011799					17	13	2	0	0	0	0.027866	1	2050	2050		62.978	8.2138	1	42384	+		56908	19784	39745	39810	62376	62376					0.06757239308467433
PASLRKGP	8	Unmodified	_PASLRKGP_					0	0	0			REV__nc|ENSG00000004777|O14559-11|ARHGAP33	REV__nc|ENSG00000004777|O14559-11|ARHGAP33	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	413.250695	824.486836	-0.0087868	-3.6311E-06	-0.67536	-0.00027909	-0.68415	-0.00028272	413.2502438779872	31.088	0.5722	31.157	30.955	31.527	0.068962	-0.098032	0.00031577	NaN	62.978	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63912	+		56909	19784	39745	39810							0.06757239308467433
PASLVTVAAAR	11	Unmodified	_PASLVTVAAAR_					0	0	0		ENST00000531504.5_1_11:33280110-33280188:+|nuORF	ENST00000531504.5_1_11:33280110-33280188:+|nuORF	ENST00000531504.5_1_11:33280110-33280188:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3139038085938	2	528.314023	1054.61349	-0.80734	-0.00042653	1.5464	0.00081701	0.73911	0.00039048	528.3148148521342	97.258	1.3155	97.258	96.748	98.063	0					61	29	3	0	0	0	0.87847	1	12447	12447		52.937	3.4952	1	290290			56910	16263	39746	39811	62377	62377					0.08837120742919069
PASPAANAK	9	Unmodified	_PASPAANAK_					0	0	0			REV__nc|ENSG00000166839|Q495B1-1|ANKDD1A	REV__nc|ENSG00000166839|Q495B1-1|ANKDD1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.9264831542969	2	413.72451	825.434466	0.067077	2.7751E-05	0.34527	0.00014284	0.41234	0.0001706	413.724478106838	30.964	0.59012	30.975	30.709	31.299	0.011799					29	13	3	0	0	0	0.024487	1	2050	2050		24.203	10.427	1	377060	+		56911	36892	39747	39812	62378	62378					0.014766561748388085
PASPHHHGGY	10	Unmodified	_PASPHHHGGY_					0	0	0			REV__ENSG00000123388|ENST00000546378|HOXC11	REV__ENSG00000123388|ENST00000546378|HOXC11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2413330078125	2	530.24139	1058.46823	-0.098714	-5.2342E-05	-0.75444	-0.00040004	-0.85316	-0.00045238	530.2408927350496	110.12	1.4041	110.13	109.79	111.2	0.0059204					101	50	3	0	0	0	1.1283	1	13901	13901		25.45	2.4077	1	137900	+		56912	22694	39748	39813	62379	62379					-0.05866922333370894
PASPRARP	8	Unmodified	_PASPRARP_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2470703125	2	426.245944	850.477334	0.47902	0.00020418	1.0764	0.00045881	1.5554	0.00066299	426.24709055663897	103.18	0.63659	103.18	102.94	103.58	-0.0046005					39	14	4	0	0	0	1.043	1	13164	13164		30.504	0	1	852770			56913	9057	39749	39814	62380	62380					0.0461147102294035
PASPTLEVEL	10	Unmodified	_PASPTLEVEL_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2846069335938	2	528.284597	1054.55464	-0.057071	-3.015E-05	-0.47364	-0.00025022	-0.53071	-0.00028037	528.2843094792337	87.168	2.4173	87.132	85.503	87.921	-0.035355					112	57	4	0	0	0	0.60198	1	10956	10956		76.774	7.1465	1	11322000			56914	6411	39750	39815	62381	62381					0.029545996579372513
PASPVQPLLL	10	Unmodified	_PASPVQPLLL_					0	0	0			REV__ENST00000495396.5_1_1:204956439-204985664:+|nuORF	REV__ENST00000495396.5_1_1:204956439-204985664:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2982177734375	2	517.815867	1033.61718	-1.727	-0.00089427	2.1881	0.001133	0.4611	0.00023877	517.8163498780319	38.783	0.38796	38.81	38.572	38.96	0.027275					13	9	2	0	0	0	0.03519	1	3236	3236		29.15	19.444	1	38284	+		56915	33803	39751	39816	62382	62382					0.10171790516801593
PASQRKKP	8	Unmodified	_PASQRKKP_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7489318847656	2	456.274701	910.534849	-0.3073	-0.00014021	-0.34665	-0.00015817	-0.65395	-0.00029838	456.27433043008153	29.281	1.0052	29.359	29.128	30.133	0.078344					42	24	3	0	0	0	0.027866	1	1812	1812		30.504	0	1	348510	+		56916	21662	39752	39817	62383	62383					0.07600313228510913
PASRIILL	8	Unmodified	_PASRIILL_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2667541503906	2	441.792195	881.569838	-0.74265	-0.0003281	1.0825	0.00047823	0.33982	0.00015013	441.79250208218104	60.788	0.52799	60.86	60.603	61.131	0.071125					25	13	3	0	0	0	0.027866	1	6891	6891		23.042	0	1	349940	+		56917	28309	39753	39818	62384	62384					0.12431556036472102
PASSLLEQLY	10	Unmodified	_PASSLLEQLY_					0	0	0			REV__ENSG00000232237|ENST00000449188|ASCL5	REV__ENSG00000232237|ENST00000449188|ASCL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.797607421875	2	560.797872	1119.58119	-0.86745	-0.00048647	0.26238	0.00014714	-0.60507	-0.00033932	560.7979071154483	55.35	0.85149	55.204	54.837	55.688	-0.14609					82	23	6	0	0	0	0.52982	3	5922	5922;5934;5959		84.916	3.8775	1	12824000	+		56918	28902	39754	39819	62385;62386;62387	62385					0.026182885492971764
PASSLLEQLY	10	Unmodified	_PASSLLEQLY_					0	0	0			REV__ENSG00000232237|ENST00000449188|ASCL5	REV__ENSG00000232237|ENST00000449188|ASCL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7971801757812	2	560.797872	1119.58119	-0.1748	-9.8029E-05	-0.4709	-0.00026408	-0.6457	-0.00036211	560.7975138554705	55.454	0.76175	55.223	54.891	55.653	-0.23087					75	21	6	0	0	0	0.34101	3	5928	5928;5951;5963		104.75	19.586	1	13792000	+		56919	28902	39754	39819	62388;62389;62390	62388					0.026182885492971764
PASSLLEQLY	10	Unmodified	_PASSLLEQLY_					0	0	0			REV__ENSG00000232237|ENST00000449188|ASCL5	REV__ENSG00000232237|ENST00000449188|ASCL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.7975463867188	2	560.797872	1119.58119	-0.61196	-0.00034319	-0.015811	-8.8669E-06	-0.62777	-0.00035205	560.7977866483347	55.432	0.81594	55.217	54.857	55.673	-0.21551					84	22	6	0	0	0	0.52982	4	5911	5911;5932;5944;5956		84.916	4.4609	1	14876000	+		56920	28902	39754	39819	62391;62392;62393;62394	62391					0.026182885492971764
PASSPGLFTQG	11	Unmodified	_PASSPGLFTQG_					0	0	0			REV__ENSG00000161021|ENST00000292599|MAML1	REV__ENSG00000161021|ENST00000292599|MAML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.265869140625	2	531.266739	1060.51892	2.8981	0.0015397	-0.76507	-0.00040645	2.1331	0.0011332	531.2661171481059	17.131	0.21228	17.131	16.989	17.201	0					10	4	3	0	0	0	1.0592	1	134	134		22.58	0.87732	1	90584	+		56921	25370	39755	39820	62395	62395					-0.008914377990549838
PASVDRVV	8	Unmodified	_PASVDRVV_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.7396545410156	2	421.74016	841.465767	-0.42766	-0.00018036	0.80619	0.00034	0.37853	0.00015964	421.7403779753754	22.871	0.59778	22.871	22.525	23.123	0					28	12	3	0	0	0	0.845	1	861	861		55.504	0.72789	1	759760	+		56922	27694	39756	39821	62396	62396					0.03869229208953584
PASWTPWPGA	10	Unmodified	_PASWTPWPGA_					0	0	0			REV__chr17:51166601-51166827|391|139.75|0.0|23.74|+|2|None,NME2|1	REV__chr17:51166601-51166827|391|139.75|0.0|23.74|+|2|None,NME2|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8157958984375	2	535.258717	1068.50288	-0.02296	-1.2289E-05	-1.0636	-0.00056929	-1.0865	-0.00058158	535.2577918873862	71.785	0.3931	71.51	71.273	71.666	-0.2751					14	9	2	0	0	0	0.03519	1	8372	8372		27.882	0	1	139600	+		56923	19388	39757	39822	62397	62397					-0.028630992453145154
PATFHLLA	8	Unmodified	_PATFHLLA_					0	0	0		ENSG00000187823|ENST00000695839|RTL4	ENSG00000187823|ENST00000695839|RTL4	ENSG00000187823|ENST00000695839|RTL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.247314453125	2	435.247621	868.480688	-0.8996	-0.00039155	0.44383	0.00019318	-0.45577	-0.00019837	435.2476545565228	29.215	0.83368	29.215	28.778	29.611	0					47	20	3	0	0	0	0.94001	1	1759	1759		46.766	11.566	1	2760300			56924	9664	39758	39823	62398	62398					0.0411872107695217
PATGGARWPG	10	Unmodified	_PATGGARWPG_					0	0	0			REV__ENST00000252136.11_2_22:20104501-20104702:-|nuORF	REV__ENST00000252136.11_2_22:20104501-20104702:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.28326416015625	2	485.248683	968.482814	-0.7468	-0.00036238	2.6447	0.0012834	1.8979	0.00092098	485.2506002758172	21.467	0.4779	21.539	21.352	21.83	0.071487					13	9	2	0	0	0	0.03519	1	640	640		27.882	0	1	26203	+		56925	29509	39759	39824	62399	62399					-0.0026885018525035775
PATGQNGPRGL	11	Unmodified	_PATGQNGPRGL_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2846069335938	2	534.283254	1066.55196	-0.34549	-0.00018459	3.4049	0.0018192	3.0594	0.0016346	534.2854367620389	105.78	1.0462	105.77	105.28	106.33	-0.0013199					80	36	3	0	0	0	0.98542	1	13534	13534		40.058	2.2467	1	240410			56926	5169	39760	39825	62400	62400					0.021341890436588073
PATGQNGPRGL	11	Unmodified	_PATGQNGPRGL_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MSMS	OPSCC_40_ClassI_Rep-3	6	534.2828979492188	2	534.283254	1066.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.16	1	111.01	110.51	111.51	-0.1469								0	0	0	1.4623	1	13570	13570		17.468	0.10304	1				56927	5169	39760	39825	62401	62401					0.021341890436588073
PATSPQRI	8	Unmodified	_PATSPQRI_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2490539550781	2	435.245609	868.476666	0.26495	0.00011532	3.5915	0.0015632	3.8565	0.0016785	435.24701554658805	28.919	0.58746	29	28.742	29.329	0.080811					45	14	4	0	0	0	0.6536	1	1663	1663		71.296	7.0884	1	2881600	+		56928	23887	39761	39826	62402	62402					0.03716631583245089
PATVTTLQP	9	Unmodified	_PATVTTLQP_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2587890625	2	464.260925	926.507297	-0.93491	-0.00043404	-1.789	-0.00083058	-2.7239	-0.0012646	464.25993450615397	21.313	0.72329	21.313	21.048	21.771	0					27	14	3	0	0	0	0.67308	1	657	657		47.916	0	1	313780	+		56929	27576	39762	39827	62403	62403					0.04110365177609765
PAVGKTALAQ	10	Unmodified	_PAVGKTALAQ_					0	0	0		nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000471809.5_1_22:37159849-37172159:-|nuORF;ENST00000465023.1_1_22:37163271-37171742:-|nuORF	nc|ENSG00000100360|Q9BW83-2|IFT27	nc|ENSG00000100360|Q9BW83-2|IFT27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.75286865234375	2	478.282192	954.549831	-0.17501	-8.3705E-05	-1.8432	-0.00088158	-2.0182	-0.00096528	478.2804298662862	32.304	0.53498	32.316	32.023	32.558	0.011799					23	13	3	0	0	0	0.03519	1	2245	2245		71.877	7.6702	1	115860			56930	2191	39763	39828	62404	62404					0.07073760305820542
PAVLGTVTVT	10	Unmodified	_PAVLGTVTVT_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.77117919921875	2	479.2844	956.554247	0.5381	0.0002579	-0.41267	-0.00019778	0.12543	6.0117E-05	479.2841718808791	74.548	1.0474	74.289	73.817	74.864	-0.25887					35	24	2	0	0	0	0.03519	1	9137	9137		58.782	14.665	1	119350	+		56931	24228	39764	39829	62405	62405					0.07423224728779587
PAVNMHLGMSL	11	Unmodified	_PAVNMHLGMSL_					0	0	0		ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-2|ITGA10;ENST00000468261.1_1_1:145525044-145528351:+|nuORF	ENSG00000143127|ENST00000369304|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.8184814453125	2	585.293919	1168.57328	-0.23433	-0.00013715	-3.8282	-0.0022406	-4.0626	-0.0023778	585.2900166629662	19.062	0.34527	18.858	18.658	19.004	-0.20371					13	6	3	0	0	0	0.024785	1	357	357		45.972	1.8554	1	42538			56932	5612	39765	39830	62406	62406					-0.004258852434759319
PAVQLLDL	8	Unmodified	_PAVQLLDL_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7590637207031	2	434.760561	867.506569	-0.22276	-9.6848E-05	-2.6899	-0.0011694	-2.9126	-0.0012663	434.7592793989391	21.612	1.8667	21.522	20.72	22.587	-0.090094					83	38	4	0	0	0	0.95417	1	663	663		44.531	0.41427	1	1189900	+		56933	24371	39766	39831	62407	62407					0.06751570528570028
PAVRKDVK	8	Unmodified	_PAVRKDVK_					0	0	0			REV__chr14:105769986-105771112|113|25.8|0.67|5.26|-|2|IGHG3,IGHG3|1	REV__chr14:105769986-105771112|113|25.8|0.67|5.26|-|2|IGHG3,IGHG3|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2689514160156	2	456.784902	911.55525	-0.84233	-0.00038477	1.008	0.00046043	0.16564	7.5662E-05	456.7851898904664	27.839	0.60328	27.671	27.445	28.048	-0.16816					27	14	2	0	0	0	0.027866	1	1552	1552		38.806	8.3025	1	375280	+		56934	19366	39767	39832	62408	62408					0.09593483888318133
PAWHGVIVGEA	11	Unmodified	_PAWHGVIVGEA_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.329833984375	2	568.298373	1134.58219	-0.47866	-0.00027202	-1.0106	-0.00057433	-1.4893	-0.00084635	568.2973506983743	90.67	0.58472	90.681	90.407	90.991	0.011276					43	13	5	0	0	0	0.024759	1	11416	11416		26.693	5.746	1	656910	+		56935	23772	39768	39833	62409	62409					0.020285477088918924
PAWIRGGL	8	Unmodified	_PAWIRGGL_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	435.253237	868.491922	-0.073723	-3.2088E-05	0.44784	0.00019493	0.37412	0.00016284	435.253350925083	49.356	0.68482	49.203	48.682	49.366	-0.15277					22	18	2	0	0	0	0.027866	1	4991	4991		35.201	6.9464	1	86042			56936	18454	39769	39834	62410	62410					0.0524154317108696
PAWIRGGL	8	Unmodified	_PAWIRGGL_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.253237	868.491922	0.37304	0.00016237	-0.16828	-7.3244E-05	0.20476	8.9123E-05	435.2531681048226	49.102	0.70167	49.102	48.585	49.287	0	-0.0060345	-0.00062817	NaN	33.516	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105740			56937	18454	39769	39834							0.0524154317108696
PAWIRGGL	8	Unmodified	_PAWIRGGL_					0	0	0		nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-4|POLR2H	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.253237	868.491922	-0.58139	-0.00025305	1.3776	0.00059961	0.79623	0.00034656	435.2539118312167	48.944	0.71968	49.018	48.596	49.316	0.074196	-0.089708	0.00071755	NaN	33.516	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87127			56938	18454	39769	39834							0.0524154317108696
PAWLLLAIW	9	Unmodified	_PAWLLLAIW_					0	0	0		nc|ENSG00000065485|Q14554-2|PDIA5;ENSG00000065485|ENST00000316218|PDIA5	nc|ENSG00000065485|Q14554-2|PDIA5	nc|ENSG00000065485|Q14554-2|PDIA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.3010864257812	2	541.823495	1081.63244	-0.82268	-0.00044575	-3.2445	-0.0017579	-4.0672	-0.0022037	541.8215387586954	64.815	0.63651	64.581	64.334	64.971	-0.2345					34	15	3	0	0	0	0.024475	1	7433	7433		21.702	0	1	497610			56939	1304	39770	39835	62411	62411					0.09488702104658842
PAWVEGRGPS	10	Unmodified	_PAWVEGRGPS_					0	0	0			REV__ENST00000572977.5_2_17:80900162-80901834:-|nuORF	REV__ENST00000572977.5_2_17:80900162-80901834:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3262939453125	2	528.267073	1054.51959	-0.23541	-0.00012436	3.3968	0.0017944	3.1614	0.0016701	529.2739720390388	72.075	0.69251	72.075	71.68	72.373	0					31	17	3	0	0	0	0.03519	1	8766	8766		31.53	17.754	1	199860	+		56940	35428	39771	39836	62412	62412					-0.005485983593416677
PAYAKQLS	8	Unmodified	_PAYAKQLS_					0	0	0		nc|nan|Q9H972-2|C14orf93;ENSG00000100802|ENST00000299088|C14orf93	nc|nan|Q9H972-2|C14orf93	nc|nan|Q9H972-2|C14orf93	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7292785644531	2	439.242535	876.470518	-0.18312	-8.0432E-05	0.45284	0.0001989	0.26972	0.00011847	439.24260906580605	35.552	0.6218	35.596	35.381	36.003	0.04406					26	15	3	0	0	0	0.027866	1	2666	2666		18.324	0	1	317040			56941	2248	39772	39837	62413	62413					0.027341133517211347
PCAMPLTWY	9	Unmodified	_PCAMPLTWY_					0	0	0		ENST00000480321.1_1_13:113699393-113699726:+|nuORF	ENST00000480321.1_1_13:113699393-113699726:+|nuORF	ENST00000480321.1_1_13:113699393-113699726:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.3267211914062	2	541.245906	1080.47726	-0.77468	-0.00041929	0.24404	0.00013209	-0.53064	-0.00028721	541.2457668421047	49.052	0.4006	48.773	48.611	49.011	-0.27977					16	10	2	0	0	0	0.024466	1	4918	4918		33.516	13.034	1	466110			56942	15194	39773	39838	62414	62414					-0.05976033083584298
PCAPAPVR	8	Unmodified	_PCAPAPVR_					0	0	0			REV__ENST00000588848.5_3_19:13260816-13260948:-|nuORF	REV__ENST00000588848.5_3_19:13260816-13260948:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.71868896484375	2	405.718173	809.421793	0.42064	0.00017066	1.1539	0.00046818	1.5746	0.00063884	405.71855832902037	73.378	0.77773	73.107	72.76	73.538	-0.27126					56	19	4	0	0	0	0.94001	2	8917	8917;8931		46.766	0	1	4597900	+		56943	35659	39774	39839	62415;62416	62415					0.00945921510970038
PCAPAPVR	8	Unmodified	_PCAPAPVR_					0	0	0			REV__ENST00000588848.5_3_19:13260816-13260948:-|nuORF	REV__ENST00000588848.5_3_19:13260816-13260948:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7185974121094	2	405.718173	809.421793	1.6713	0.00067809	-0.0029485	-1.1963E-06	1.6684	0.00067689	405.71806219824936	73.068	0.82208	73.077	72.735	73.558	0.0096512					63	20	4	0	0	0	1.0017	1	8848	8848		37.028	0	1	4234500	+		56944	35659	39774	39839	62417	62417					0.00945921510970038
PCARAGIH	8	Unmodified	_PCARAGIH_					0	0	0		ENST00000598118.1_1_19:35506495-35517042:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.7132873535156	2	412.713422	823.412291	0.34278	0.00014147	-0.93057	-0.00038406	-0.58779	-0.00024259	412.71294569661325	73.028	1.0619	73.028	72.454	73.516	0					63	26	4	0	0	0	1.0017	3	8908	8886;8908;8933		37.028	7.1869	1	4245300			56945	1906	39775	39840	62418;62419;62420	62419					-0.006478467745637317
PCCPQGRLLV	10	Unmodified	_PCCPQGRLLV_					0	0	0		ENST00000439955.1_1_2:118593974-118594413:+|nuORF	ENST00000439955.1_1_2:118593974-118594413:+|nuORF	ENST00000439955.1_1_2:118593974-118594413:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3189697265625	2	543.283354	1084.55216	-0.54799	-0.00029771	-3.0567	-0.0016607	-3.6047	-0.0019584	543.782149679651	59.475	0.94816	59.56	58.884	59.833	0.085682					37	25	2	0	0	0	0.03519	1	6707	6707		45.952	0	1	290020			56946	14342	39776	39841	62421	62421					0.013261494476410007
PCDLPVKCVV	10	Unmodified	_PCDLPVKCVV_					0	0	0			REV__nc|ENSG00000054219|O60449-2|LY75	REV__nc|ENSG00000054219|O60449-2|LY75	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2384033203125	2	536.780113	1071.54567	-0.2317	-0.00012437	-3.951	-0.0021208	-4.1827	-0.0022452	536.7783955539261	60.386	1.0149	60.189	59.689	60.704	-0.19742					40	25	2	0	0	0	0.03519	1	6762	6762		82.241	34.281	1	158340	+		56947	36456	39777	39842	62422	62422					0.012762114962697524
PCDPLGKTK	9	Unmodified	_PCDPLGKTK_					0	0	0			REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	479.754953	957.495352	0.43435	0.00020838	1.5938	0.00076465	2.0282	0.00097303	479.7556145610951	33.302	0.93188	33.359	32.683	33.615	0.056568					36	24	2	0	0	0	0.02435	1	2298	2298		51.335	5.3835	1	907760	+		56948	37185	39778	39843	62423	62423					0.01490425162774045
PCDPLGKTK	9	Unmodified	_PCDPLGKTK_					0	0	0			REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	REV__nc|ENSG00000260565|Q9NX77|ERVK13-1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.754953	957.495352	-0.86673	-0.00041582	3.9175	0.0018794	3.0507	0.0014636	479.7570831956584	33.536	0.1229	33.371	33.278	33.401	-0.16565	0.005986	0.0020112	NaN	51.335	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35581	+		56949	37185	39778	39843							0.01490425162774045
PCENGLALEI	10	Unmodified	_PCENGLALEI_					0	0	0			REV__nc|ENSG00000180316|Q8N8W4-2|PNPLA1	REV__nc|ENSG00000180316|Q8N8W4-2|PNPLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2893676757812	2	529.762975	1057.5114	-0.041422	-2.1944E-05	1.3393	0.00070953	1.2979	0.00068758	529.7629973862399	87.631	1.1675	87.596	86.563	87.731	-0.035362					38	27	2	0	0	0	0.03519	1	10847	10847		49.536	8.9634	1	80743	+		56950	27331	39779	39844	62424	62424					-0.015059133909971933
PCFLFTEPEG	10	Unmodified	_PCFLFTEPEG_					0	0	0			REV__nc|ENSG00000198408|O60502-2|OGA	REV__nc|ENSG00000198408|O60502-2|OGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.7897338867188	2	570.257525	1138.5005	-1.075	-0.00061304	-1.6451	-0.00093813	-2.7201	-0.0015512	570.2566971640275	77.938	0.29329	77.954	77.78	78.073	0.015907					11	6	2	0	0	0	0.03519	1	9569	9569		27.882	4.8398	1	60195	+		56951	19186	39780	39845	62425	62425					-0.06321315765262625
PCGGRRHS	8	Unmodified	_PCGGRRHS_					0	0	0			REV__MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	REV__MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.28741455078125	2	435.211578	868.408603	-0.65168	-0.00028362	2.6298	0.0011445	1.9781	0.00086091	435.21500170868194	26.289	1.5325	26.053	25.343	26.876	-0.23603					99	39	4	0	0	0	0.027866	1	1312	1312		28.254	1.4582	1	521860	+		56952	36379	39781	39846	62426	62426					-0.03086516548421514
PCHFYRWFHYF	11	Unmodified	_PCHFYRWFHYF_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.7772827148438	3	534.908163	1601.70266	-1.4976	-0.00080109	-3.2915	-0.0017606	-4.7891	-0.0025617	535.2413210144304	46.468	0.13405	46.316	46.209	46.344	-0.15156					5	3	2	0	0	0	0.024845	1	4579	4579		10.104	4.1029	1	65155	+		56953	24281	39782	39847	62427	62427					-0.07412367569190792
PCHNCLHTL	9	Unmodified	_PCHNCLHTL_					0	0	0		ENST00000507522.1_1_5:256531-256657:+|nuORF	ENST00000507522.1_1_5:256531-256657:+|nuORF	ENST00000507522.1_1_5:256531-256657:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7905883789062	2	519.236404	1036.45826	-0.55221	-0.00028673	-3.618	-0.0018786	-4.1702	-0.0021653	519.234372975562	85.146	0.70679	85.088	84.815	85.522	-0.05761					29	16	3	0	0	0	0.024457	1	10699	10699		37.159	0	1	186680			56954	15766	39783	39848	62428	62428					-0.058515696546464824
PCHRLVLAACS	11	Unmodified	_PCHRLVLAACS_					0	0	0		ENSG00000157119|ENST00000287777|KLHL40;nc|ENSG00000157119|Q2TBA0-2|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.302001953125	2	585.299536	1168.58452	-1.5365	-0.00089932	3.2024	0.0018744	1.6659	0.00097505	585.3013777019471	62.469	0.43737	62.285	62.035	62.473	-0.18386					34	12	5	0	0	0	0.95882	1	7052	7052		45.972	3.5761	1	1701500			56955	6578	39784	39849	62429	62429					0.0069693685063612065
PCHRLVLAACS	11	Unmodified	_PCHRLVLAACS_					0	0	0		ENSG00000157119|ENST00000287777|KLHL40;nc|ENSG00000157119|Q2TBA0-2|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.3001098632812	2	585.299536	1168.58452	-0.94513	-0.00055319	2.6056	0.001525	1.6604	0.00097186	585.8025965261862	62.647	0.543	62.388	62.017	62.56	-0.25824					24	15	2	0	0	0	0.69247	1	7046	7046		64.207	7.4862	1	1245900			56956	6578	39784	39849	62430	62430					0.0069693685063612065
PCHRLVLAACS	11	Unmodified	_PCHRLVLAACS_					0	0	0		ENSG00000157119|ENST00000287777|KLHL40;nc|ENSG00000157119|Q2TBA0-2|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	ENSG00000157119|ENST00000287777|KLHL40	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.299536	1168.58452	-0.42556	-0.00024908	1.9163	0.0011216	1.4907	0.0008725	585.3003747946924	62.516	0.85593	62.295	62.084	62.94	-0.22097	-0.027924	-0.001094	NaN	64.207	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1279500			56957	6578	39784	39849							0.0069693685063612065
PCILFVILT	9	Unmodified	_PCILFVILT_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant;nc|ENSG00000179869|Q86UQ4-2|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7857971191406	2	509.803914	1017.59328	0.72419	0.00036919	-0.82105	-0.00041857	-0.09686	-4.938E-05	509.8035098589919	87.507	0.69447	87.529	87.178	87.873	0.021255					28	15	2	0	0	0	0.024466	1	10890	10890		25.45	9.8084	1	201260			56958	8932	39785	39850	62431	62431					0.08518233758763927
PCIVIPVLL	9	Unmodified	_PCIVIPVLL_					0	0	0		ENSG00000177576|ENST00000318240|C18orf32	ENSG00000177576|ENST00000318240|C18orf32	ENSG00000177576|ENST00000318240|C18orf32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.80767822265625	2	483.806457	965.598361	0.14794	7.1573E-05	3.7231	0.0018013	3.871	0.0018728	483.80810517050384	64.35	0.77738	64.396	64.011	64.788	0.045502					53	20	4	0	0	0	0.48384	1	7496	7496		60.404	7.0522	1	1106200			56959	8753	39786	39851	62432	62432					0.11418537621386804
PCKDQVPAT	9	Unmodified	_PCKDQVPAT_					0	0	0			REV__ENST00000425497.5_1_20:48892267-48894933:+|nuORF	REV__ENST00000425497.5_1_20:48892267-48894933:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7355651855469	2	479.73676	957.458967	1.0655	0.00051115	-4.199	-0.0020144	-3.1335	-0.0015032	479.7344760086726	60.053	1.9295	59.856	59.38	61.309	-0.19742					134	48	5	0	0	0	0.29158	1	6636	6636		76.774	0	1	22815000	+		56960	32202	39787	39852	62433	62433					-0.021464517339381928
PCKKKAVL	8	Unmodified	_PCKKKAVL_					0	0	0		ENSG00000008282|ENST00000455385|SYPL1;nc|ENSG00000008282|Q16563|SYPL1	ENSG00000008282|ENST00000455385|SYPL1	ENSG00000008282|ENST00000455385|SYPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2745666503906	2	443.780773	885.546994	0.27166	0.00012056	-0.56887	-0.00025245	-0.2972	-0.00013189	443.7804704243688	50.206	0.38877	50.287	49.989	50.377	0.08099					26	11	3	0	0	0	0.027866	1	5182	5182		18.324	0	1	813770			56961	841	39788	39853	62434	62434					0.09964213647333509
PCLESDPDGRL	11	Unmodified	_PCLESDPDGRL_					0	0	0			REV__ENST00000380320.8_1_2:27303021-27303066:+|nuORF	REV__ENST00000380320.8_1_2:27303021-27303066:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	601.2774658203125	2	601.27952	1200.54449	-1.0755	-0.0006467	-2.3205	-0.0013953	-3.3961	-0.002042	601.2781471946339	84.567	1.1593	84.567	84.171	85.331	0					89	27	5	0	0	0	0.08209	1	10613	10613		112.41	26.549	1	4178400	+		56962	31471	39789	39854	62435	62435					-0.04776331338939599
PCLESDPDGRL	11	Unmodified	_PCLESDPDGRL_					0	0	0			REV__ENST00000380320.8_1_2:27303021-27303066:+|nuORF	REV__ENST00000380320.8_1_2:27303021-27303066:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.2781982421875	2	601.27952	1200.54449	0.26278	0.00015801	-2.9301	-0.0017618	-2.6674	-0.0016038	601.2773744523796	84.489	1.0044	84.331	83.976	84.98	-0.15868					60	23	4	0	0	0	0.32544	2	10237	10211;10237		87.696	4.6693	1	2629600	+		56963	31471	39789	39854	62436;62437	62437					-0.04776331338939599
PCLESDPDGRL	11	Unmodified	_PCLESDPDGRL_					0	0	0			REV__ENST00000380320.8_1_2:27303021-27303066:+|nuORF	REV__ENST00000380320.8_1_2:27303021-27303066:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	601.2775268554688	2	601.27952	1200.54449	0.3552	0.00021357	-3.278	-0.001971	-2.9228	-0.0017574	601.2772141275867	84.472	0.9239	84.335	84.064	84.988	-0.13789					60	21	4	0	0	0	0.44817	1	10226	10226		79.713	4.6693	1	2718000	+		56964	31471	39789	39854	62438	62438					-0.04776331338939599
PCLFPPLSP	9	Unmodified	_PCLFPPLSP_					0	0	0			REV__ENSG00000163121|ENST00000451794|NEURL3	REV__ENSG00000163121|ENST00000451794|NEURL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7602233886719	2	485.756964	969.499375	0.56002	0.00027203	2.2382	0.0010872	2.7982	0.0013592	485.75795403620043	72.388	1.7178	72.107	71.62	73.338	-0.28124					103	43	3	0	0	0	0.075871	1	8792	8792		119.22	2.3176	1	4791200	+		56965	25537	39790	39855	62439	62439					0.013405146564878123
PCLGLLANL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))PCLGLLANL_					1	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7435607910156	2	478.267696	954.520839	-0.27008	-0.00012917	2.8208	0.0013491	2.5507	0.0012199	478.26994333143756	29.717	0.44514	29.72	29.591	30.036	0.0031376					13	10	2	0	0	0	0.022799	1	1880	1880		60.294	10.269	1	47657			56966	7090	39791	39856	62440	62440					0.04175899685208151
PCLGSVLLVG	10	Unmodified	_PCLGSVLLVG_					0	0	0			REV__ENSG00000198759|ENST00000361306|EGFL6	REV__ENSG00000198759|ENST00000361306|EGFL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2781066894531	2	479.275521	956.536489	0.63902	0.00030627	3.1427	0.0015062	3.7817	0.0018125	479.2771210125938	81.156	2.9484	80.92	79.122	82.071	-0.23574					188	70	3	0	0	0	1.0541	1	9776	9776		38.806	5.9937	1	2107600	+		56967	28468	39792	39857	62441	62441					0.05648186202256511
PCLGSVLLVG	10	Unmodified	_PCLGSVLLVG_					0	0	0			REV__ENSG00000198759|ENST00000361306|EGFL6	REV__ENSG00000198759|ENST00000361306|EGFL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2773742675781	2	479.275521	956.536489	-0.16077	-7.7054E-05	3.8323	0.0018367	3.6715	0.0017597	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	0.941	1	9765	9765		51.335	12.529	1	2028900	+		56968	28468	39792	39857	62442	62442					0.05648186202256511
PCLHLKKPQ	9	Unmodified	_PCLHLKKPQ_					0	0	0			REV__ENSG00000006194|ENST00000219069|ZNF263	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2747192382812	2	532.307687	1062.60082	-0.063321	-3.3706E-05	2.8259	0.0015043	2.7626	0.0014705	532.3091687008997	79.491	2.1882	79.34	78.133	80.321	-0.15051					88	51	2	0	0	0	0.024466	1	9346	9346		18.324	0	1	192090	+		56969	19826	39793	39858	62443	62443					0.07202386079052303
PCLKIAENL	9	Unmodified	_PCLKIAENL_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.776123046875	2	500.778428	999.542302	-1.1872	-0.00059451	-1.8583	-0.00093058	-3.0454	-0.0015251	500.77728297618677	79.803	0.92133	79.631	79.275	80.197	-0.17226					48	21	3	0	0	0	0.2508	1	9889	9889		82.241	13.454	1	1160000	+		56970	26519	39794	39859	62444	62444					0.04251284713905079
PCLKPDGSSDL	11	Unmodified	_PCLKPDGSSDL_					0	0	0			REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__ENSG00000100346|ENST00000402142|CACNA1I	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.2708740234375	2	566.271164	1130.52777	0.43894	0.00024856	0.67334	0.0003813	1.1123	0.00062986	566.2717012848174	96.177	2.647	96.04	95.243	97.89	-0.1367					96	60	4	0	0	0	0.48498	1	11883	11883		77.318	0.47095	1	1499600	+		56971	21095;36517	39795	39860	62445	62445					-0.032268322248683035
PCLKVAKF	8	Unmodified	_PCLKVAKF_					0	0	0			REV__ENSG00000251380|ENST00000503143|DCANP1	REV__ENSG00000251380|ENST00000503143|DCANP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.5657043457031	2	453.267499	904.520445	2.4989	0.0011327	1.7843	0.00080878	4.2833	0.0019415	453.2682580653673	18.602	0.24466	18.602	18.529	18.774	0					7	4	2	0	0	0	0.027866	1	318	318		28.254	20.564	1	12470	+		56972	29032	39796	39861	62446	62446					0.06436524756009021
PCLLLKRDS	9	Unmodified	_PCLLLKRDS_					0	0	0			REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3232421875	2	522.797152	1043.57975	0.06174	3.2278E-05	-0.52687	-0.00027544	-0.46513	-0.00024317	522.7967745879744	45.482	0.96232	45.23	44.748	45.71	-0.25252					50	26	3	0	0	0	0.024381	1	4273	4273		29.15	2.4566	1	699910	+		56973	31255	39797	39862	62447	62447					0.05970375979518394
PCLLLKRDS	9	Unmodified	_PCLLLKRDS_					0	0	0			REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.797152	1043.57975	-0.72006	-0.00037644	-5.8845	-0.0030764	-6.6046	-0.0034529	522.7941455299817	45.562	0.40038	45.41	45.211	45.611	-0.15157	0.13803	-0.0062011	NaN	29.15	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200850	+		56974	31255	39797	39862							0.05970375979518394
PCLLLKRDS	9	Unmodified	_PCLLLKRDS_					0	0	0			REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	REV__ENST00000373433.8_1_20:36687832-36687916:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.797152	1043.57975	-0.69314	-0.00036237	0.39346	0.0002057	-0.29968	-0.00015667	522.7972789071633	45.314	0.99403	45.215	44.672	45.666	-0.099449	-0.057104	0.00036314	NaN	29.15	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1660700	+		56975	31255	39797	39862							0.05970375979518394
PCLLVLAAW	9	Unmodified	_PCLLVLAAW_					0	0	0			REV__ENST00000588685.1_1_19:56989231-56989342:+|nuORF	REV__ENST00000588685.1_1_19:56989231-56989342:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2602844238281	2	493.280606	984.546659	-0.15481	-7.6366E-05	0.61624	0.00030398	0.46142	0.00022761	493.2821491641877	83.581	0.94442	83.49	83.129	84.074	-0.090454					35	21	3	0	0	0	0.024541	1	10368	10368		21.702	0	1	250560	+		56976	35653	39798	39863	62448	62448					0.053767939274848686
PCLPKAKY	8	Unmodified	_PCLPKAKY_					0	0	0		ENST00000498589.1_3_22:22015281-22024373:+|nuORF	ENST00000498589.1_3_22:22015281-22024373:+|nuORF	ENST00000498589.1_3_22:22015281-22024373:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.258056640625	2	460.257131	918.499709	-0.9769	-0.00044963	3.7731	0.0017366	2.7962	0.001287	460.25875103859966	37.878	0.56308	37.656	37.427	37.99	-0.22149					29	15	2	0	0	0	0.71717	1	3085	3085		65.897	5.6035	1	1816000			56977	15624	39799	39864	62449	62449					0.03719934376340461
PCLRMPRASL	10	Unmodified	_PCLRMPRASL_					0	0	0		ENST00000221980.4_1_19:10402386-10402776:+|nuORF	ENST00000221980.4_1_19:10402386-10402776:+|nuORF	ENST00000221980.4_1_19:10402386-10402776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	572.3073120117188	2	572.309903	1142.60525	0.027849	1.5938E-05	-3.4907	-0.0019977	-3.4628	-0.0019818	572.3075502848291	105.19	1.1875	105.19	104.65	105.84	0.00097656					59	40	3	0	0	0	0.52982	1	13451	13451		84.916	5.2029	1	429330			56978	11186	39800	39865	62450	62450					0.03965527230320731
PCLSMQMNHL	10	Unmodified	_PCLSMQMNHL_					0	0	0			REV__nc|ENSG00000168959|P41594-3|GRM5	REV__nc|ENSG00000168959|P41594-3|GRM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.7686157226562	2	587.264304	1172.51406	0.23608	0.00013864	-3.9843	-0.0023398	-3.7482	-0.0022012	587.7641545772383	79.709	0.209	79.462	79.362	79.571	-0.2465					6	4	2	0	0	0	0.03519	1	9533	9533		49.442	0	1	93354	+		56979	26307	39801	39866	62451	62451					-0.06530104529292657
PCLSNREW	8	Unmodified	_PCLSNREW_					0	0	0		ENST00000476571.1_1_6:124443035-124712010:+|nuORF	ENST00000476571.1_1_6:124443035-124712010:+|nuORF	ENST00000476571.1_1_6:124443035-124712010:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.79718017578125	2	502.734551	1003.45455	0.77537	0.0003898	2.4259	0.0012196	3.2013	0.0016094	502.7357703946102	19.642	0.24908	19.442	19.305	19.554	-0.2001					7	4	2	0	0	0	0.027866	1	436	436		18.324	0	1	24112			56980	15089	39802	39867	62452	62452					-0.04703916156836385
PCLSPLLL	8	Unmodified	_PCLSPLLL_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2569580078125	2	428.254057	854.493561	0.26225	0.00011231	3.9672	0.001699	4.2295	0.0018113	428.2556250257901	38.875	1.6851	38.649	38.21	39.896	-0.2257					81	44	3	0	0	0	0.85409	1	3235	3235		54.765	0	1	3457500			56981	6530	39803	39868	62453	62453					0.06049416144844599
PCLSPLLL	8	Unmodified	_PCLSPLLL_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	428.254057	854.493561	-1.1502	-0.00049258	3.1914	0.0013667	2.0412	0.00087416	428.25517785571014	38.345	0.8647	38.345	38.037	38.902	0	-0.151	-0.00093202	NaN	54.765	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421080			56982	6530	39803	39868							0.06049416144844599
PCLSPLLL	8	Unmodified	_PCLSPLLL_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	428.254057	854.493561	-0.76825	-0.000329	3.1221	0.0013371	2.3539	0.0010081	428.2552806637126	38.296	0.68932	38.214	37.918	38.607	-0.082512	-0.28212	-0.00099135	NaN	54.765	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314750			56983	6530	39803	39868							0.06049416144844599
PCLSPLLL	8	Unmodified	_PCLSPLLL_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	428.254057	854.493561	-1.2662	-0.00054224	3.614	0.0015477	2.3478	0.0010055	428.2552476029391	38.461	0.72346	38.489	38.162	38.886	0.027275	-0.0070533	-0.00057011	NaN	54.765	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343860			56984	6530	39803	39868							0.06049416144844599
PCLSPLLL	8	Unmodified	_PCLSPLLL_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	428.254057	854.493561	-0.8752	-0.00037481	4.7811	0.0020475	3.9059	0.0016727	428.2559609555331	38.797	0.72022	38.633	38.396	39.116	-0.16458	0.1371	0.00042951	NaN	54.765	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1961000			56985	6530	39803	39868							0.06049416144844599
PCLSPLLL	8	Unmodified	_PCLSPLLL_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	428.254057	854.493561	-0.34399	-0.00014731	4.6292	0.0019825	4.2852	0.0018351	428.2559158183201	38.868	1.3294	38.645	38.292	39.622	-0.22311	0.14946	0.00029941	NaN	54.765	60	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2260400			56986	6530	39803	39868							0.06049416144844599
PCLVELLSH	9	Unmodified	_PCLVELLSH_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3110656738281	2	505.770603	1009.52665	-0.71022	-0.00035921	0.48994	0.0002478	-0.22028	-0.00011141	505.77082488649484	48.41	0.58624	48.41	48.174	48.761	0					40	16	3	0	0	0	0.024183	1	4941	4941		50.025	0	1	1426700			56987	2747	39804	39869	62454	62454					0.02226998196886143
PCLVFHEGGY	10	Unmodified	_PCLVFHEGGY_					0	0	0		nc|ENSG00000188917|Q96GJ1-3|TRMT2B;nc|ENSG00000188917|Q96GJ1-2|TRMT2B;ENSG00000188917|ENST00000372936|TRMT2B	nc|ENSG00000188917|Q96GJ1-3|TRMT2B	nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2792358398438	2	561.257859	1120.50117	0.32698	0.00018352	4.1986	0.0023565	4.5256	0.00254	561.2598786880068	85.119	0.53334	84.919	84.633	85.167	-0.19991					21	12	3	0	0	0	0.03519	1	10328	10328		29.15	0	1	264780			56988	9767	39805	39870	62455	62455					-0.05426476325533258
PCLWPPPRPP	10	Unmodified	_PCLWPPPRPP_					0	0	0			REV__nc|ENSG00000288658|A0A7I2V3R4|RNF228	REV__nc|ENSG00000288658|A0A7I2V3R4|RNF228	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7528686523438	2	580.307687	1158.60082	0.13062	7.5801E-05	1.3813	0.00080161	1.512	0.00087741	580.3091001036179	75.071	0.16814	74.795	74.72	74.888	-0.27573					5	3	2	0	0	0	0.03519	1	8857	8857		30.504	0	1	74258	+		56989	37223	39806	39871	62456	62456					0.027863860790603212
PCLYGLLVML	10	Unmodified	_PCLYGLLVML_					0	0	0			REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3251953125	2	561.308506	1120.60246	0.14887	8.3559E-05	-0.86478	-0.00048541	-0.71592	-0.00040185	561.3077486946419	68.366	0.37778	68.385	68.158	68.536	0.018913					16	9	2	0	0	0	0.03519	1	8082	8082		26.796	12.132	1	455980	+		56990	26785	39807	39872	62457	62457					0.04698259052815956
PCNPPMPL	8	Unmodified	_PCNPPMPL_					0	0	0			REV__nc|ENSG00000169398|Q05397-3|PTK2	REV__nc|ENSG00000169398|Q05397-3|PTK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7480773925781	2	434.706417	867.398281	-0.55249	-0.00024017	-3.8051	-0.0016541	-4.3576	-0.0018943	434.70505396316145	65.551	0.2755	65.278	65.055	65.33	-0.27282					11	7	2	0	0	0	0.027866	1	7709	7709		20.482	0	1	263570	+		56991	26364	39808	39873	62458	62458					-0.04072260317866494
PCPAGFYGLG	10	Unmodified	_PCPAGFYGLG_					0	0	0		SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant;ENSG00000244486|ENST00000622235|SCARF2;nc|ENSG00000244486|Q96GP6|SCARF2	SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	SCARF2|p.S543Gfs*50|1|0.18|ENSG00000244486|chr22:20427464-20427465|-/GGACC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.22821044921875	2	491.228571	980.442588	0.01957	9.6132E-06	3.7815	0.0018576	3.8011	0.0018672	491.23032081686614	62.164	0.70136	61.907	61.588	62.29	-0.25725					40	17	3	0	0	0	0.59161	1	6981	6981		77.944	8.8509	1	1635800			56992	10823	39809	39874	62459	62459					-0.04841532900036327
PCPALWGWAL	10	Unmodified	_PCPALWGWAL_					0	0	0		ENST00000417399.5_1_7:55589394-55589544:-|nuORF	ENST00000417399.5_1_7:55589394-55589544:-|nuORF	ENST00000417399.5_1_7:55589394-55589544:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.807861328125	2	557.281137	1112.54772	-1.6392	-0.00091349	2.0972	0.0011687	0.45801	0.00025524	557.2816173682431	65.171	0.19211	64.909	64.758	64.95	-0.2626					5	4	2	0	0	0	0.03519	1	7647	7647		35.201	16.097	1	32551			56993	13914	39810	39875	62460	62460					-0.004049917035899853
PCPESKPLL	9	Unmodified	_PCPESKPLL_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2665710449219	2	492.265153	982.515753	1.3774	0.00067803	2.9008	0.0014279	4.2781	0.002106	492.26625660966	37.134	1.1452	37.134	36.724	37.869	0					75	30	4	0	0	0	0.43973	1	2990	2990		63.306	1.615	1	12836000	+		56994	21211	39811	39876	62461	62461					0.02379595822594638
PCPESKPLL	9	Unmodified	_PCPESKPLL_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2668762207031	2	492.265153	982.515753	0.21205	0.00010438	3.8353	0.001888	4.0473	0.0019924	492.2666524696594	37.019	0.98215	36.955	36.47	37.452	-0.063385					77	25	5	0	0	0	0.11848	1	2965	2965		106.42	15.639	1	12205000	+		56995	21211	39811	39876	62462	62462					0.02379595822594638
PCPESKPLL	9	Unmodified	_PCPESKPLL_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2666320800781	2	492.265153	982.515753	-0.23364	-0.00011501	4.3872	0.0021597	4.1536	0.0020447	492.2669179923295	37.045	0.99952	37.078	36.678	37.677	0.032269					73	25	4	0	0	0	0.31247	1	2944	2944		73.975	5.1879	1	11695000	+		56996	21211	39811	39876	62463	62463					0.02379595822594638
PCPGKECVFI	10	Unmodified	_PCPGKECVFI_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.7646484375	2	546.764463	1091.51437	-0.55009	-0.00030077	-0.5154	-0.0002818	-1.0655	-0.00058257	546.7640736317584	67.351	0.97653	67.351	67.049	68.026	0					69	24	4	0	0	0	0.941	1	8060	8060		51.335	1.8939	1	4128000	+		56997	23804	39812	39877	62464	62464					-0.027723615378135946
PCPHPLHEL	9	Unmodified	_PCPHPLHEL_					0	0	0		ENST00000468031.1_1_16:449329-450339:+|nuORF	ENST00000468031.1_1_16:449329-450339:+|nuORF	ENST00000468031.1_1_16:449329-450339:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3031005859375	2	521.760569	1041.50659	1.23	0.00064178	-1.7771	-0.00092723	-0.54708	-0.00028545	521.7598974238883	82.486	0.59831	82.376	82.126	82.724	-0.11006					21	13	2	0	0	0	0.024386	1	10311	10311		33.516	3.0119	1	244770			56998	14862	39813	39878	62465	62465					-0.012507527430898335
PCPLFGPDR	9	Unmodified	_PCPLFGPDR_					0	0	0			REV__ENST00000590238.1_1_19:3754325-3760115:-|nuORF	REV__ENST00000590238.1_1_19:3754325-3760115:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.78765869140625	2	501.247295	1000.48004	0.49003	0.00024563	-2.7263	-0.0013665	-2.2362	-0.0011209	501.24487555001895	72.211	0.20151	72.211	72.091	72.292	0					6	4	2	0	0	0	0.024405	1	8788	8788		44.117	0	1	30252	+		56999	35697	39814	39879	62466	62466					-0.02018441634413648
PCPLLGAKEN	10	Unmodified	_PCPLLGAKEN_					0	0	0			REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7584228515625	2	521.273509	1040.53247	0.41819	0.00021799	-0.65572	-0.00034181	-0.23753	-0.00012382	521.7751706617952	58.646	0.32138	58.465	58.347	58.669	-0.18133					10	7	2	0	0	0	0.03519	1	6474	6474		29.15	0	1	131640	+		57000	27482	39815	39880	62467	62467					0.013820967085621305
PCPPEVDPIE	10	Unmodified	_PCPPEVDPIE_					0	0	0		ENST00000533694.5_1_11:119025500-119029249:+|nuORF;nc|ENSG00000172350|Q9H172-4|ABCG4;nc|ENSG00000172350|Q9H172-3|ABCG4;nc|ENSG00000172350|Q9H172-2|ABCG4;ENSG00000172350|ENST00000619701|ABCG4	ENST00000533694.5_1_11:119025500-119029249:+|nuORF	ENST00000533694.5_1_11:119025500-119029249:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3106079101562	2	548.254982	1094.49541	-0.54057	-0.00029637	0.056826	3.1155E-05	-0.48375	-0.00026522	548.2548525494099	67.316	0.68008	67.316	66.926	67.606	0					28	16	2	0	0	0	0.03519	1	8070	8070		37.159	19.794	1	150770			57001	8265	39816	39881	62468	62468					-0.04805619627904889
PCPPEVDPIE	10	Unmodified	_PCPPEVDPIE_					0	0	0		ENST00000533694.5_1_11:119025500-119029249:+|nuORF;nc|ENSG00000172350|Q9H172-4|ABCG4;nc|ENSG00000172350|Q9H172-3|ABCG4;nc|ENSG00000172350|Q9H172-2|ABCG4;ENSG00000172350|ENST00000619701|ABCG4	ENST00000533694.5_1_11:119025500-119029249:+|nuORF	ENST00000533694.5_1_11:119025500-119029249:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3099975585938	2	548.254982	1094.49541	-0.53367	-0.00029259	-0.12392	-6.7939E-05	-0.65759	-0.00036052	548.2548105656558	67.558	0.93172	67.582	66.855	67.786	0.023911					35	22	2	0	0	0	0.03519	1	8006	8006		35.618	6.4687	1	127300			57002	8265	39816	39881	62469	62469					-0.04805619627904889
PCPPGYVAPT	10	Unmodified	_PCPPGYVAPT_					0	0	0		ENST00000565010.1_1_16:602435-603513:+|nuORF	ENST00000565010.1_1_16:602435-603513:+|nuORF	ENST00000565010.1_1_16:602435-603513:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.75103759765625	2	501.241678	1000.4688	-0.26056	-0.0001306	-3.0753	-0.0015415	-3.3359	-0.0016721	501.2400915028508	35.821	0.40311	35.609	35.314	35.717	-0.21246					15	10	2	0	0	0	0.03519	1	2748	2748		45.952	11.779	1	222360			57003	16910	39817	39882	62470	62470					-0.031412637285598066
PCPQHVVW	8	Unmodified	_PCPQHVVW_					0	0	0			REV__ENST00000448464.6_1_8:95942709-95944323:-|nuORF	REV__ENST00000448464.6_1_8:95942709-95944323:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.87921142578125	2	483.23673	964.458907	-0.44473	-0.00021491	2.7574	0.0013325	2.3127	0.0011176	483.2380842945571	43.724	1.7152	43.62	43.434	45.149	-0.10468					58	45	2	0	0	0	0.027866	1	4014	4014		60.404	14.452	1	156670	+		57004	25821	39818	39883	62471	62471					-0.02474406943269969
PCPSHIKVQL	10	Unmodified	_PCPSHIKVQL_					0	0	0			REV__ENST00000471172.1_1_10:112590820-112591150:+|nuORF	REV__ENST00000471172.1_1_10:112590820-112591150:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.3140258789062	2	561.310426	1120.6063	0.62788	0.00035244	3.0546	0.0017146	3.6824	0.002067	561.3116856740809	70.822	0.88591	70.529	70.07	70.956	-0.29292					47	25	3	0	0	0	1.0122	1	8543	8543		44.377	5.1244	1	919460	+		57005	33168	39819	39884	62472	62472					0.05082064870885006
PCPVSVGFEV	10	Unmodified	_PCPVSVGFEV_					0	0	0			REV__ENST00000466151.1_1_1:17395382-17395430:-|nuORF	REV__ENST00000466151.1_1_1:17395382-17395430:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	517.254785	1032.49502	0.28753	0.00014872	2.385	0.0012336	2.6725	0.0013824	517.2560702815338	81.906	1.6268	81.713	81.254	82.881	-0.19334					76	37	4	0	0	0	0.74632	1	9871	9871		64.207	11.271	1	576780	+		57006	33023	39820	39885	62473	62473					-0.01992994557053862
PCPVSVGFEV	10	Unmodified	_PCPVSVGFEV_					0	0	0			REV__ENST00000466151.1_1_1:17395382-17395430:-|nuORF	REV__ENST00000466151.1_1_1:17395382-17395430:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.257080078125	2	517.254785	1032.49502	-0.6314	-0.00032659	3.6731	0.0018999	3.0417	0.0015733	517.2565159337505	81.864	0.81131	81.722	81.316	82.127	-0.14248					44	18	3	0	0	0	0.52982	1	9843	9843		84.916	13.038	1	635130	+		57007	33023	39820	39885	62474	62474					-0.01992994557053862
PCPVTMEGCGY	11	Oxidation (M)	_PCPVTM(Oxidation (M))EGCGY_		PCPVTM(1)EGCGY		PCPVTM(88)EGCGY	0	0	1			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.7686157226562	2	586.724677	1171.4348	0.21888	0.00012842	4.1667	0.0024447	4.3855	0.0025731	586.7270970273044	79.845	0.41814	79.598	79.32	79.738	-0.2465					16	9	2	0	0	0	0.02383	1	9533	9533		87.754	41.802	1	65828	+		57008	22746	39821	39886	62475	62475		679			-0.1440579627412717
PCPVTMEGCGY	11	Oxidation (M)	_PCPVTM(Oxidation (M))EGCGY_		PCPVTM(1)EGCGY		PCPVTM(110)EGCGY	0	0	1			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.7691650390625	2	586.724677	1171.4348	-0.44203	-0.00025935	4.218	0.0024748	3.776	0.0022155	587.2285769870298	79.69	0.41753	79.54	79.321	79.738	-0.15051					21	9	3	0	0	0	0.01623	1	9520	9520		111.65	67.531	1	102220	+		57009	22746	39821	39886	62476	62476		679			-0.1440579627412717
PCPYCSGRHCV	11	Unmodified	_PCPYCSGRHCV_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.24951171875	2	611.251728	1220.4889	-1.2533	-0.00076608	-2.5733	-0.0015729	-3.8266	-0.002339	611.2500314991119	61.53	0.85001	61.316	61.042	61.892	-0.21375					55	20	4	0	0	0	0.6558	2	6885	6885;6896		66.429	5.4573	1	2179200	+		57010	26472	39822	39887	62477;62478	62477					-0.11252159331888834
PCPYCSGRHCV	11	Unmodified	_PCPYCSGRHCV_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.2499389648438	2	611.251728	1220.4889	-1.1057	-0.00067585	-2.6899	-0.0016442	-3.7956	-0.0023201	611.2499439042028	61.446	0.61996	61.27	60.997	61.617	-0.1762					41	14	4	0	0	0	0.25842	2	6876	6876;6888		93.195	31.504	1	1974400	+		57011	26472	39822	39887	62479;62480	62479					-0.11252159331888834
PCPYCSGRHCV	11	Unmodified	_PCPYCSGRHCV_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.2490844726562	2	611.251728	1220.4889	-0.59958	-0.00036649	-3.5547	-0.0021728	-4.1543	-0.0025393	611.2496044422033	61.615	0.80952	61.358	61.049	61.859	-0.25725					56	19	5	0	0	0	0.56861	2	6885	6885;6897		71.877	15.444	1	2062900	+		57012	26472	39822	39887	62481;62482	62481					-0.11252159331888834
PCPYCSGRHCV	11	Unmodified	_PCPYCSGRHCV_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	611.251728	1220.4889	-1.2533	-0.00076608	-2.5733	-0.0015729	-3.8266	-0.002339	611.2500314991119	61.53	0.85001	61.316	61.042	61.892	-0.21375	-0.17216	0.00018859	NaN	66.429	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2179200	+		57013	26472	39822	39887							-0.11252159331888834
PCPYCSGRHCV	11	Unmodified	_PCPYCSGRHCV_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	611.251728	1220.4889	-1.1057	-0.00067585	-2.6899	-0.0016442	-3.7956	-0.0023201	611.2499439042028	61.446	0.61996	61.27	60.997	61.617	-0.1762	-0.044012	0.00049873	NaN	93.195	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1974400	+		57014	26472	39822	39887							-0.11252159331888834
PCPYCSGRHCV	11	Unmodified	_PCPYCSGRHCV_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	611.251728	1220.4889	-1.102	-0.0006736	-5.7863	-0.0035369	-6.8884	-0.0042105	611.2478587822283	61.839	0.42712	61.661	61.576	62.003	-0.17781	0.17216	-0.0037394	NaN	66.429	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85667	+		57015	26472	39822	39887							-0.11252159331888834
PCPYCSGRHCV	11	Unmodified	_PCPYCSGRHCV_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	611.251728	1220.4889	-0.59958	-0.00036649	-3.5547	-0.0021728	-4.1543	-0.0025393	611.2496044422033	61.615	0.80952	61.358	61.049	61.859	-0.25725	0.044012	-0.00055847	NaN	93.195	56	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2062900	+		57016	26472	39822	39887							-0.11252159331888834
PCQDVDEC	8	Unmodified	_PCQDVDEC_					0	0	0		nc|ENSG00000090006|Q8N2S1|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;ENSG00000090006|ENST00000396819|LTBP4	nc|ENSG00000090006|Q8N2S1|LTBP4	nc|ENSG00000090006|Q8N2S1|LTBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.662841796875	2	454.659861	907.305168	0.29873	0.00013582	2.7325	0.0012424	3.0312	0.0013782	454.6625127910412	68.669	1.8667	68.426	67.707	69.574	-0.24277					185	45	5	0	0	0	1.0574	1	7980	7980		26.796	1.3459	1	1459100			57017	18107	39823	39888	62483	62483					-0.15219229561762404
PCRKGATCIN	10	Carbamidomethyl (C)	_PCRKGATC(Carbamidomethyl (C))IN_	PCRKGATC(1)IN		PC(-52)RKGATC(52)IN		0	1	0		ENSG00000134250|ENST00000256646|NOTCH2;NOTCH2|p.R1111Gfs*96|1|0.26|ENSG00000134250|chr1:119937864-119937864|G/-|frameshift_variant;NOTCH2|p.Q1584Rfs*17|1|0.32|ENSG00000134250|chr1:119923745-119923745|T/-|frameshift_variant;NOTCH2|p.V1697*|1|0.29|ENSG00000134250|chr1:119922360-119922360|C/-|frameshift_variant	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2725219726562	2	560.273518	1118.53248	-0.13336	-7.4719E-05	-3.7212	-0.0020849	-3.8546	-0.0021596	560.2714295468528	93.283	3.4529	93.283	92.622	96.075	0					214	81	5	0	0	0	0.59716	1	11822	11822		77.318	9.8239	2	17229000			57018	4770	39824	39889	62484	62484	61				-0.022042265631171176
PCRKRLSE	8	Unmodified	_PCRKRLSE_					0	0	0			REV__ENST00000490523.1_1_7:6064306-6068335:-|nuORF	REV__ENST00000490523.1_1_7:6064306-6068335:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7625732421875	2	494.771468	987.528384	0.063122	3.1231E-05	-4.4619	-0.0022076	-4.3988	-0.0021764	494.7691523413167	64.557	0.67094	64.557	64.238	64.909	0					40	17	3	0	0	0	0.027866	1	7585	7585		30.504	6.3009	1	1080800	+		57019	20770	39825	39890	62485	62485					0.03412052005478472
PCSALRAR	8	Unmodified	_PCSALRAR_					0	0	0			REV__ENSG00000164488|ENST00000366795|DACT2	REV__ENSG00000164488|ENST00000366795|DACT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.8536376953125	2	437.239804	872.465055	-0.15437	-6.7496E-05	-3.8457	-0.0016815	-4.0001	-0.001749	437.2380131051485	38.261	0.81422	38.042	37.755	38.569	-0.21849					37	22	2	0	0	0	0.027866	1	3215	3215		17.365	5.1581	1	902560	+		57020	25761	39826	39891	62486	62486					0.023721112882412854
PCSALRAR	8	Unmodified	_PCSALRAR_					0	0	0			REV__ENSG00000164488|ENST00000366795|DACT2	REV__ENSG00000164488|ENST00000366795|DACT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.239804	872.465055	-0.74618	-0.00032626	-3.0951	-0.0013533	-3.8413	-0.0016796	437.2382779301294	38.221	0.72492	38.042	37.775	38.5	-0.17929	0.025332	0.00024585	NaN	17.365	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604220	+		57021	25761	39826	39891							0.023721112882412854
PCSALRAR	8	Unmodified	_PCSALRAR_					0	0	0			REV__ENSG00000164488|ENST00000366795|DACT2	REV__ENSG00000164488|ENST00000366795|DACT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.239804	872.465055	-0.79042	-0.0003456	-3.3039	-0.0014446	-4.0943	-0.0017902	437.23819348948115	38.187	0.7312	37.966	37.686	38.417	-0.22149	-0.050844	6.3308E-05	NaN	17.365	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	680900	+		57022	25761	39826	39891							0.023721112882412854
PCSIIKWLI	9	Unmodified	_PCSIIKWLI_					0	0	0		ENST00000374612.5_1_1:23667485-23670726:-|nuORF	ENST00000374612.5_1_1:23667485-23670726:-|nuORF	ENST00000374612.5_1_1:23667485-23670726:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7692260742188	2	536.814813	1071.61507	0.0057246	3.073E-06	-0.64997	-0.00034892	-0.64425	-0.00034584	536.8127743385922	87.799	1.204	87.663	86.632	87.836	-0.13613					35	28	2	0	0	0	0.024457	1	10591	10591		10.265	0	1	193460			57023	13124	39827	39892	62487	62487					0.08213038507346937
PCSILHISF	9	Unmodified	_PCSILHISF_					0	0	0		ENST00000525065.1_1_11:117062460-117063438:+|nuORF	ENST00000525065.1_1_11:117062460-117063438:+|nuORF	ENST00000525065.1_1_11:117062460-117063438:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.287841796875	2	508.76532	1015.51609	-0.25006	-0.00012722	0.24749	0.00012591	-0.0025745	-1.3098E-06	508.765532308807	52.448	0.90991	52.258	51.921	52.831	-0.18982					29	22	2	0	0	0	0.024	1	5471	5471		45.952	15.634	1	164740			57024	16079	39828	39893	62488	62488					0.008950155424372497
PCSLLPLLL	9	Unmodified	_PCSLLPLLL_					0	0	0		ENST00000555109.1_1_14:24970801-24977459:+|nuORF	ENST00000555109.1_1_14:24970801-24977459:+|nuORF	ENST00000555109.1_1_14:24970801-24977459:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7982177734375	2	484.796089	967.577625	1.4645	0.00071001	1.551	0.00075191	3.0155	0.0014619	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.4855	1	6769	6769		60.294	6.9425	1	119110000			57025	16673	39829	39894	62489	62489					0.09253947241722926
PCSSSSDSDS	10	Unmodified	_PCSSSSDSDS_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.227294921875	2	486.166561	970.31857	-0.064889	-3.1547E-05	1.7976	0.00087393	1.7327	0.00084238	486.1672600487524	54.863	0.67803	54.632	54.387	55.065	-0.23087					39	18	3	0	0	0	0.03519	1	5850	5850		31.53	0	1	759710			57026	2605	39830	39895	62490	62490					-0.16777700248815108
PCSTEALCL	9	Unmodified	_PCSTEALCL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2689514160156	2	468.711896	935.409239	-0.47338	-0.00022188	0.50757	0.0002379	0.034185	1.6023E-05	468.712160300339	60.48	0.36354	60.48	60.219	60.582	0					17	9	2	0	0	0	0.023775	1	6964	6964		47.916	14.4	1	204040	+		57027	20599	39831	39896	62491	62491					-0.06104902734261941
PCSTEALCL	9	Unmodified	_PCSTEALCL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.711896	935.409239	-0.82696	-0.00038761	0.90895	0.00042604	0.08199	3.843E-05	468.71218430424636	60.694	0.51275	60.518	60.28	60.793	-0.1761	0.020268	0.00030317	NaN	47.916	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310440	+		57028	20599	39831	39896							-0.06104902734261941
PCSTEALCL	9	Unmodified	_PCSTEALCL_					0	0	0			REV__nc|ENSG00000078043|O75928-3|PIAS2	REV__nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.711896	935.409239	-1.0218	-0.00047893	0.84709	0.00039704	-0.17472	-8.1891E-05	468.7122538360607	60.849	0.59471	60.595	60.336	60.931	-0.25373	0.097445	0.00024517	NaN	47.916	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397570	+		57029	20599	39831	39896							-0.06104902734261941
PCSTNPYITL	10	Unmodified	_PCSTNPYITL_					0	0	0		ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.3154907226562	2	554.7708	1107.52705	0.82867	0.00045972	0.22597	0.00012536	1.0546	0.00058508	555.2704261446539	67.875	0.49155	67.619	67.412	67.903	-0.25516					16	11	2	0	0	0	0.03519	1	7803	7803		42.396	4.5846	1	60787			57030	10836	39832	39897	62492	62492					-0.022416268739334555
PCTGSSSAWPF	11	Unmodified	_PCTGSSSAWPF_					0	0	0		ENST00000367240.6_1_1:203028938-203029510:+|nuORF	ENST00000367240.6_1_1:203028938-203029510:+|nuORF	ENST00000367240.6_1_1:203028938-203029510:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.7897338867188	2	570.244949	1138.47534	-0.83684	-0.0004772	-3.5001	-0.0019959	-4.3369	-0.0024731	570.2429140588977	77.498	0.88387	77.511	77.145	78.029	0.013504					34	20	2	0	0	0	0.024759	1	9569	9569		34.173	7.4796	1	546350			57031	12850	39833	39898	62493	62493					-0.08835370567840073
PCTNKNATISV	11	Unmodified	_PCTNKNATISV_					0	0	0			REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.2926635742188	2	574.29243	1146.57031	-0.46084	-0.00026466	0.44898	0.00025785	-0.011857	-6.8093E-06	574.2925367419647	65.001	0.88831	64.767	64.49	65.379	-0.2345					62	21	4	0	0	0	0.28368	1	7417	7417		90.601	8.2958	1	6694300	+		57032	27457	39834	39899	62494	62494					0.0028856290334715595
PCTNKNATISV	11	Unmodified	_PCTNKNATISV_					0	0	0			REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.2918090820312	2	574.29243	1146.57031	-1.1128	-0.00063905	1.1261	0.00064669	0.013301	7.6385E-06	574.2929320633225	65.002	0.8512	64.799	64.539	65.39	-0.20254					60	20	4	0	0	0	0.28368	1	7397	7397		90.601	2.8466	1	8144400	+		57033	27457	39834	39899	62495	62495					0.0028856290334715595
PCTPIVLLL	9	Unmodified	_PCTPIVLLL_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|64|3|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|64|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7975769042969	2	484.796089	967.577625	0.55749	0.00027027	2.3846	0.001156	2.9421	0.0014263	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.4855	1	6715	6715		60.294	1.512	1	98413000	+		57034	36106	39835	39900	62496	62496					0.09253947241722926
PCTPIVLLL	9	Unmodified	_PCTPIVLLL_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|64|3|sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|64|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.79815673828125	2	484.796089	967.577625	0.11867	5.753E-05	2.8485	0.001381	2.9672	0.0014385	484.7976554584649	58.741	1.6893	58.833	58.297	59.986	0.091217					126	45	4	0	0	0	0.4855	2	6566	6566;6590		60.294	5.9077	1	93907000	+		57035	36106	39835	39900	62497;62498	62497					0.09253947241722926
PCVKNAYIV	9	Unmodified	_PCVKNAYIV_					0	0	0			REV__ENST00000267257.11_2_12:120648258-120648309:-|nuORF	REV__ENST00000267257.11_2_12:120648258-120648309:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.3038024902344	2	503.773145	1005.53174	1.6913	0.00085201	1.2136	0.00061139	2.9049	0.0014634	503.7736227927577	24.207	1.3019	24.026	23.332	24.634	-0.18089					42	29	2	0	0	0	0.024466	1	917	917		33.516	5.2613	1	134100	+		57036	29770	39836	39901	62499	62499					0.029193020594789232
PCVPLIFTVD	10	Unmodified	_PCVPLIFTVD_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.2720336914062	2	552.293911	1102.57327	0.14658	8.0957E-05	-3.6694	-0.0020266	-3.5228	-0.0019456	552.2915833499418	77.239	0.6741	77.239	76.998	77.672	0					35	15	3	0	0	0	0.03519	1	9588	9588		24.203	0	1	565320	+		57037	20656	39837	39902	62500	62500					0.02608438028164528
PCVQTCVNTY	10	Unmodified	_PCVQTCVNTY_					0	0	0		ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.26806640625	2	564.246634	1126.47872	0.001087	6.1333E-07	0.2102	0.0001186	0.21128	0.00011922	564.2467698619878	59.712	0.58875	59.464	59.211	59.8	-0.24842					18	14	2	0	0	0	0.03519	1	6626	6626		45.972	33.766	1	67096			57038	5392	39838	39903	62501	62501					-0.07946443785453994
PCVSLLRIG	9	Unmodified	_PCVSLLRIG_					0	0	0			REV__ENST00000368339.9_2_1:155657968-155658130:-|nuORF	REV__ENST00000368339.9_2_1:155657968-155658130:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2459716796875	2	479.281137	956.547722	1.2868	0.00061672	-1.3617	-0.00065261	-0.074885	-3.5891E-05	479.2801533755153	51.464	0.62022	51.28	50.867	51.487	-0.18404					31	15	3	0	0	0	0.024205	1	5274	5274		63.306	9.9548	1	242740	+		57039	31050	39839	39904	62502	62502					0.06771008296391301
PCWLELYL	8	Unmodified	_PCWLELYL_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7822265625	2	518.762246	1035.50994	-0.655	-0.00033979	-1.6289	-0.00084501	-2.2839	-0.0011848	519.2631859599916	79.24	0.28932	79.068	78.861	79.15	-0.17226					10	6	2	0	0	0	0.027866	1	9783	9783		65.897	0	1	35609	+		57040	24168	39840	39905	62503	62503					-0.0063950268909138686
PCWPYLTAE	9	Unmodified	_PCWPYLTAE_					0	0	0		ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000196436|ENST00000692376|NPIPB15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3267822265625	2	540.24696	1078.47937	-1.0255	-0.00055404	-2.4286	-0.001312	-3.4541	-0.0018661	540.2457927311262	49.161	0.45533	48.979	48.773	49.228	-0.18206					19	11	2	0	0	0	0.024386	1	4890	4890		33.516	0	1	260410			57041	9875	39841	39906	62504	62504					-0.05673281074132319
PCWRLPCGI	9	Unmodified	_PCWRLPCGI_					0	0	0		ENST00000389851.8_2_4:1341218-1341545:+|nuORF	ENST00000389851.8_2_4:1341218-1341545:+|nuORF	ENST00000389851.8_2_4:1341218-1341545:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3235473632812	2	522.759515	1043.50448	0.047626	2.4897E-05	-2.2679	-0.0011855	-2.2202	-0.0011606	522.7584143769355	71.258	1.3993	71.269	70.812	72.211	0.010735					48	36	2	0	0	0	0.024262	1	8673	8673		47.916	7.1374	1	169170			57042	13383	39842	39907	62505	62505					-0.015535047525418122
PCWRRLPS	8	Unmodified	_PCWRRLPS_					0	0	0			REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2929382324219	2	507.768729	1013.5229	-0.53233	-0.0002703	-2.8012	-0.0014224	-3.3335	-0.0016927	507.7669887866113	74.588	0.41753	74.598	74.397	74.814	0.0096512					22	9	3	0	0	0	0.027866	1	9030	9030		10.866	0	1	213300	+		57043	30703	39843	39908	62506	62506					0.01668373213681207
PDAAKTLL	8	Unmodified	_PDAAKTLL_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.5596923828125	2	414.744911	827.475269	-0.59585	-0.00024712	0.37294	0.00015468	-0.2229	-9.2448E-05	414.7452465184999	27.291	0.85257	27.123	26.55	27.402	-0.16816					35	19	3	0	0	0	0.027866	1	1410	1410		7.1934	0.45781	1	104050			57044	10594	39844	39909	62507	62507					0.05462997494487354
PDAAKTLL	8	Unmodified	_PDAAKTLL_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	414.744911	827.475269	-0.42275	-0.00017533	1.0961	0.00045459	0.67333	0.00027926	414.74516953618615	27.19	0.63854	26.948	26.828	27.466	-0.24217	-0.14223	0.00047832	NaN	7.1934	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90761			57045	10594	39844	39909							0.05462997494487354
PDAAKTLL	8	Unmodified	_PDAAKTLL_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.744911	827.475269	0.0068132	2.8257E-06	0.72185	0.00029939	0.72867	0.00030221	414.74503670244934	27.333	0.59036	27.176	26.974	27.564	-0.15664	0.085791	0.00016791	NaN	7.1934	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189140			57046	10594	39844	39909							0.05462997494487354
PDAITNEEY	9	Unmodified	_PDAITNEEY_					0	0	0		nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2316284179688	2	526.232561	1050.45057	0.35514	0.00018688	0.7717	0.0004061	1.1268	0.00059298	526.2328647722571	50.397	0.52546	50.217	49.901	50.426	-0.18071					32	13	3	0	0	0	0.29158	1	5106	5106		76.774	15.802	1	2170800			57047	18674	39845	39910	62508	62508					-0.07263727169561207
PDALPETL	8	Unmodified	_PDALPETL_					0	0	0		ENSG00000047648|ENST00000337414|ARHGAP6;nc|ENSG00000047648|O43182-4|ARHGAP6;ENST00000489330.6_1_X:11156985-11160533:-|nuORF	ENSG00000047648|ENST00000337414|ARHGAP6	ENSG00000047648|ENST00000337414|ARHGAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.7845458984375	2	428.226551	854.438549	0.089057	3.8136E-05	-1.7398	-0.00074503	-1.6508	-0.0007069	428.22562709449653	25.754	0.77977	25.583	25.205	25.985	-0.17078					38	20	3	0	0	0	0.027866	1	1245	1245		25.45	0	1	332610			57048	1109	39846	39911	62509	62509					0.005507008779090938
PDALPPAPSA	10	Unmodified	_PDALPPAPSA_					0	0	0		ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2449951171875	2	468.245275	934.475997	-0.29637	-0.00013877	-0.71762	-0.00033602	-1.014	-0.00047479	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	1.0781	1	13202	13202		35.618	0	1	6721300			57049	13318	39847	39912	62510	62510					0.006137921435083626
PDALPPAPSA	10	Unmodified	_PDALPPAPSA_					0	0	0		ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2444763183594	2	468.245275	934.475997	0.84537	0.00039584	-1.803	-0.00084423	-0.9576	-0.00044839	468.2442937403857	103.2	1.893	103.19	102.28	104.18	-0.0046005					118	45	4	0	0	0	1.0142	1	13162	13162		44.117	1.7207	1	6166300			57050	13318	39847	39912	62511	62511					0.006137921435083626
PDAPNALH	8	Unmodified	_PDAPNALH_					0	0	0		ENSG00000167103|ENST00000388747|PIP5KL1;nc|ENSG00000167103|Q5T9C9-2|PIP5KL1;ENST00000464759.5_1_9:130684128-130689655:-|nuORF	ENSG00000167103|ENST00000388747|PIP5KL1	ENSG00000167103|ENST00000388747|PIP5KL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.7088623046875	2	417.70886	833.403166	0.61519	0.00025697	-1.1267	-0.00047065	-0.51155	-0.00021368	417.7081773554599	98.884	1.0121	98.747	98.277	99.289	-0.13625					37	24	2	0	0	0	1.0574	1	12232	12232		26.796	2.5934	1	237310			57051	7649	39848	39913	62512	62512					-0.02019916859251225
PDAPNALH	8	Unmodified	_PDAPNALH_					0	0	0		ENSG00000167103|ENST00000388747|PIP5KL1;nc|ENSG00000167103|Q5T9C9-2|PIP5KL1;ENST00000464759.5_1_9:130684128-130689655:-|nuORF	ENSG00000167103|ENST00000388747|PIP5KL1	ENSG00000167103|ENST00000388747|PIP5KL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.7084045410156	2	417.70886	833.403166	0.21847	9.1259E-05	-0.21793	-9.103E-05	0.00054834	2.2905E-07	417.7083322648676	98.97	1.0812	98.801	98.417	99.498	-0.16862					35	24	2	0	0	0	1.0574	1	12247	12247		25.45	4.9683	1	132500			57052	7649	39848	39913	62513	62513					-0.02019916859251225
PDAVPAPKSA	10	Unmodified	_PDAVPAPKSA_					0	0	0			REV__ENST00000455294.1_1_16:698589-699174:-|nuORF	REV__ENST00000455294.1_1_16:698589-699174:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7575988769531	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	0.94316	1	13315	13315		51.193	1.6567	1	5421500	+		57053	32776	39849	39914	62514	62514					0.0248548103485291
PDAVSIRMLT	10	Unmodified	_PDAVSIRMLT_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.8179321289062	2	551.799891	1101.58523	-1.0958	-0.00060466	1.3457	0.00074257	0.24991	0.0001379	552.3039182107298	39.434	0.32182	39.458	39.349	39.671	0.023727					12	8	2	0	0	0	0.03519	1	3322	3322		47.657	8.4045	1	121730	+		57054	19695	39850	39915	62515	62515					0.03850054771373834
PDCDCKSDLL	10	Unmodified	_PDCDCKSDLL_					0	0	0			REV__LAMC2-CCDC53|1|fusion	REV__LAMC2-CCDC53|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7871704101562	2	554.736099	1107.45765	-0.45293	-0.00025126	4.2227	0.0023425	3.7698	0.0020912	554.7382154914139	82.684	1.0682	82.711	82.316	83.384	0.026558					49	24	3	0	0	0	0.03519	1	10232	10232		42.864	0	1	401710	+		57055	20227	39851	39916	62516	62516					-0.0917845388501064
PDCHFFIT	8	Unmodified	_PDCHFFIT_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2640380859375	2	490.220746	978.426938	-0.2238	-0.00010971	-3.5315	-0.0017312	-3.7553	-0.0018409	490.21896205797225	50.43	0.60305	50.511	50.211	50.814	0.080994					25	17	2	0	0	0	0.027866	1	5263	5263		50.025	2.1089	1	233260	+		57056	28261	39852	39917	62517	62517					-0.06313819417084687
PDCLEDLDSQ	10	Unmodified	_PDCLEDLDSQ_					0	0	0		ENST00000471033.5_1_2:197521363-197521654:+|nuORF;ENST00000471546.5_1_2:197504460-197531652:+|nuORF;ENSG00000144395|ENST00000389175|CCDC150	ENST00000471033.5_1_2:197521363-197521654:+|nuORF;ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.2916259765625	2	567.734611	1133.45467	0.54216	0.0003078	-3.3818	-0.00192	-2.8397	-0.0016122	567.7326580423425	59.847	0.58257	59.847	59.598	60.181	0					28	15	4	0	0	0	0.03519	1	6874	6874		14.137	11.613	1	389130			57057	14948;5733	39853	39918	62518	62518					-0.10672005738160806
PDCPQAWAAW	10	Unmodified	_PDCPQAWAAW_					0	0	0		ENST00000393818.2_2_17:40714572-40714674:+|nuORF	ENST00000393818.2_2_17:40714572-40714674:+|nuORF	ENST00000393818.2_2_17:40714572-40714674:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2813720703125	2	572.747659	1143.48076	1.1445	0.00065549	0.017999	1.0309E-05	1.1625	0.0006658	572.7472814014607	59.842	0.70614	59.645	59.132	59.838	-0.19742					29	17	2	0	0	0	0.03519	1	6559	6559		20.947	0	1	156500			57058	13470	39854	39919	62519	62519					-0.0852364698537258
PDCQRYSKLT	10	Unmodified	_PDCQRYSKLT_					0	0	0			REV__nc|ENSG00000186205|Q5VT66-3|MTARC1	REV__nc|ENSG00000186205|Q5VT66-3|MTARC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2012634277344	3	404.201012	1209.58121	0.63819	0.00025796	-0.038732	-1.5655E-05	0.59946	0.0002423	404.2009301418406	20.681	0.77917	20.513	20.197	20.976	-0.16774					47	15	4	0	0	0	1.0814	1	581	581		35.178	2.4277	1	988890	+		57059	27838	39855	39920	62520	62520					-0.015200347223753852
PDDERQCSACR	11	Unmodified	_PDDERQCSACR_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.77655029296875	3	427.176649	1278.50812	-0.34271	-0.0001464	3.5939	0.0015352	3.2512	0.0013888	427.17820371225986	33.182	0.55737	33.016	32.679	33.236	-0.16565					22	13	2	0	0	0	0.024723	1	2358	2358		11.455	0	1	143010			57060	1512	39856	39921	62521	62521					-0.1199953150728561
PDDERQCSACR	11	Unmodified	_PDDERQCSACR_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.77655029296875	3	427.176649	1278.50812	-0.84419	-0.00036062	3.2321	0.0013807	2.3879	0.00102	427.17762936754025	33.651	0.51593	33.485	33.156	33.672	-0.16565					15	12	2	0	0	0	0.024723	1	2358	2358		11.455	0	1	47159			57061	1512	39856	39921	62522	62522					-0.1199953150728561
PDDGRNLLL	9	Unmodified	_PDDGRNLLL_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.79278564453125	2	506.774731	1011.53491	-0.36133	-0.00018311	-1.8338	-0.00092932	-2.1951	-0.0011124	507.27677284947436	44.237	0.44101	44.274	44.035	44.476	0.0369					18	12	2	0	0	0	0.024325	1	4138	4138		17.365	0	1	957220	+		57062	28747	39857	39922	62523	62523					0.029602684378687627
PDEEVQAGR	9	Unmodified	_PDEEVQAGR_					0	0	0			REV__ENSG00000164236|ENST00000296657|ANKRD33B	REV__ENSG00000164236|ENST00000296657|ANKRD33B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2877502441406	2	500.738345	999.462138	0.043822	2.1943E-05	-2.2178	-0.0011105	-2.174	-0.0010886	500.73703142302526	23.902	0.62833	23.978	23.734	24.362	0.076241					27	13	3	0	0	0	0.024292	1	922	922		19.104	0	1	212660	+		57063	25721	39858	39923	62524	62524					-0.037614853555623995
PDEINDLMI	9	Unmodified	_PDEINDLMI_					0	0	0			REV__ENSG00000109920|ENST00000263773|FNBP4	REV__ENSG00000109920|ENST00000263773|FNBP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8158569335938	2	530.254982	1058.49541	0.66208	0.00035107	-4.2225	-0.002239	-3.5604	-0.0018879	530.2528070124877	68.083	0.48931	67.828	67.62	68.109	-0.25516					17	11	2	0	0	0	0.024495	1	7883	7883		26.693	0	1	96810	+		57064	21824	39859	39924	62525	62525					-0.031496196279022115
PDELNGPIIE	10	Unmodified	_PDELNGPIIE_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.2915649414062	2	548.779679	1095.5448	-0.023067	-1.2658E-05	-0.43618	-0.00023937	-0.45925	-0.00025203	548.7784184466042	72.898	1.231	72.617	72.18	73.411	-0.28124					54	30	3	0	0	0	0.03519	1	8809	8809		51.193	1.6567	1	1429500	+		57065	25587	39860	39925	62526	62526					0.0008541165257156536
PDEPIYVTS	9	Unmodified	_PDEPIYVTS_					0	0	0			REV__ENSG00000140519|ENST00000268122|RHCG	REV__ENSG00000140519|ENST00000268122|RHCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2634582519531	2	510.747847	1019.48114	-0.47389	-0.00024204	1.1381	0.00058129	0.66423	0.00033925	511.24977432740235	79.159	0.24623	79.159	79.077	79.323	0					8	5	2	0	0	0	0.024506	1	9822	9822		38.806	13.356	1	94413	+		57066	24024	39861	39926	62527	62527					-0.02781948784524957
PDEPVQVE	8	Unmodified	_PDEPVQVE_					0	0	0			REV__nc|ENSG00000103855|Q5ZPR3-2|CD276	REV__nc|ENSG00000103855|Q5ZPR3-2|CD276	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2824401855469	2	456.71909	911.423627	-0.12565	-5.7386E-05	-1.6659	-0.00076087	-1.7916	-0.00081826	456.7185081006246	34.494	0.3532	34.49	34.298	34.651	-0.0045624					13	8	2	0	0	0	0.027866	1	2565	2565		27.882	0	1	104010	+		57067	19273	39862	39927	62528	62528					-0.035627909900881605
PDERCSRHS	9	Unmodified	_PDERCSRHS_					0	0	0			REV__ENSG00000196757|ENST00000254321|ZNF700	REV__ENSG00000196757|ENST00000254321|ZNF700	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3370361328125	2	543.740896	1085.46724	-1.0548	-0.00057354	-2.9172	-0.0015862	-3.972	-0.0021598	543.7393497447309	48.572	0.38038	48.572	48.344	48.724	0					18	10	2	0	0	0	0.023007	1	4949	4949		66.429	0	1	137760	+		57068	28223	39863	39928	62529	62529					-0.07207504764619443
PDERCSRHS	9	Unmodified	_PDERCSRHS_					0	0	0			REV__ENSG00000196757|ENST00000254321|ZNF700	REV__ENSG00000196757|ENST00000254321|ZNF700	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.337158203125	2	543.740896	1085.46724	-1.0777	-0.00058601	-3.1623	-0.0017195	-4.24	-0.0023055	543.7392963587951	48.742	0.46565	48.589	48.364	48.829	-0.15277					17	12	2	0	0	0	0.023454	1	4955	4955		71.877	0	1	119970	+		57069	28223	39863	39928	62530	62530					-0.07207504764619443
PDERRRGPAA	10	Unmodified	_PDERRRGPAA_					0	0	0		ENSG00000166896|ENST00000300145|ATP23	ENSG00000166896|ENST00000300145|ATP23	ENSG00000166896|ENST00000300145|ATP23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.7930297851562	2	562.799603	1123.58465	-1.0936	-0.00061548	2.3184	0.0013048	1.2248	0.00068933	562.8009604637621	55.065	0.41622	55.164	54.916	55.332	0.098015					19	11	2	0	0	0	0.03519	1	5954	5954		45.972	8.1607	1	357210			57070	7623	39864	39929	62531	62531					0.02780396166531318
PDESKQKFVL	10	Unmodified	_PDESKQKFVL_					0	0	0		ENST00000502888.1_1_5:140062654-140070871:-|nuORF;ENST00000518126.5_1_5:140059363-140070889:-|nuORF;ENST00000506579.5_1_5:140058520-140070889:-|nuORF;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-2|HARS1;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000170445|ENST00000504156|HARS1	ENST00000502888.1_1_5:140062654-140070871:-|nuORF	ENST00000502888.1_1_5:140062654-140070871:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.80078125	2	595.824421	1189.63429	-0.21845	-0.00013016	1.7589	0.001048	1.5404	0.00091783	595.8254958714441	79.075	0.24707	78.924	78.737	78.984	-0.15051					8	5	2	0	0	0	0.03519	1	9416	9416		20.947	3.582	1	58470			57071	8040	39865	39930	62532	62532					0.04705666331960856
PDETWMFIT	9	Unmodified	_PDETWMFIT_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.2803344726562	2	570.257525	1138.5005	-1.098	-0.00062616	0.51215	0.00029206	-0.58587	-0.0003341	570.2577691901677	80.257	0.71428	80.257	79.786	80.5	0					20	16	2	0	0	0	0.024323	1	9947	9947		35.618	5.3006	1	79425			57072	4772	39866	39931	62533	62533					-0.06321315765262625
PDFDWKKI	8	Unmodified	_PDFDWKKI_					0	0	0		nc|ENSG00000155893|Q8TE99-2|PXYLP1;ENSG00000155893|ENST00000286353|PXYLP1	nc|ENSG00000155893|Q8TE99-2|PXYLP1	nc|ENSG00000155893|Q8TE99-2|PXYLP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3023681640625	2	524.776742	1047.53893	0.32164	0.00016879	0.174	9.1312E-05	0.49564	0.0002601	524.7768236226209	72.899	0.65337	72.618	72.262	72.915	-0.28124					24	15	2	0	0	0	0.027866	1	8794	8794		32.812	0.85756	1	151760			57073	6496	39867	39932	62534	62534					0.01706357931561797
PDFHASGESI	10	Unmodified	_PDFHASGESI_					0	0	0		ENST00000591806.5_1_19:1376686-1377088:+|nuORF	ENST00000591806.5_1_19:1376686-1377088:+|nuORF	ENST00000591806.5_1_19:1376686-1377088:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2405395507812	2	530.240721	1058.46689	-1.6646	-0.00088263	2.0182	0.0010701	0.35357	0.00018748	530.2417220414414	110.58	0.98775	110.44	109.89	110.88	-0.13983					75	39	2	0	0	0	1.1217	1	13544	13544		21.96	3.6355	1	68316			57074	17362	39868	39933	62535	62535					-0.06000601212804213
PDFHRLDN	8	Unmodified	_PDFHRLDN_					0	0	0			REV__nc|ENSG00000118515|O00141-3|SGK1	REV__nc|ENSG00000118515|O00141-3|SGK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2802429199219	2	507.243598	1012.47264	-0.45121	-0.00022888	0.5777	0.00029304	0.12649	6.416E-05	507.24460223368976	49.867	0.17805	49.943	49.806	49.984	0.076454					6	4	2	0	0	0	0.027866	1	5111	5111		20.947	0	1	59196	+		57075	36604	39869	39934	62536	62536					-0.03309457910495439
PDFIKQRRA	9	Unmodified	_PDFIKQRRA_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8263549804688	2	565.825089	1129.63563	0.49992	0.00028287	2.0364	0.0011522	2.5363	0.0014351	565.8259799274466	101.01	0.70289	100.88	100.66	101.36	-0.13156					37	16	4	0	0	0	0.80003	1	12524	12524		39.253	1.7447	1	215940			57076	2551	39870	39935	62537	62537					0.07599345211360742
PDFKPLPPW	9	Unmodified	_PDFKPLPPW_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8206176757812	2	548.794935	1095.57532	-0.5038	-0.00027648	-3.3738	-0.0018515	-3.8776	-0.002128	548.793142748028	56.976	0.62349	56.808	56.52	57.143	-0.1672					32	16	3	0	0	0	0.024523	1	6193	6193		29.15	0	1	842330	+		57077	23961	39871	39936	62538	62538					0.031352348282553066
PDFLKVYLN	9	Unmodified	_PDFLKVYLN_					0	0	0		ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.2825317382812	2	554.8055	1107.59645	0.11305	6.2724E-05	-1.5952	-0.00088502	-1.4821	-0.0008223	554.8041386668042	93.449	0.48135	93.326	93.015	93.497	-0.12215					15	10	2	0	0	0	0.024477	1	11502	11502		27.882	3.6795	1	92896			57078	6640	39872	39937	62539	62539					0.04695200137143729
PDGAALLLL	9	Unmodified	_PDGAALLLL_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7684326171875	2	441.768386	881.522219	-0.32178	-0.00014215	-0.70805	-0.00031279	-1.0298	-0.00045495	441.7681351071089	102.79	1.3357	102.79	102.48	103.82	0					96	32	5	0	0	0	0.80658	1	13194	13194		38.806	3.1879	1	28165000	+		57079	23683	39873	39938	62540	62540					0.07671857045625075
PDGGRRLRQVR	11	Unmodified	_PDGGRRLRQVR_					0	0	0			REV__ENSG00000240857|ENST00000381249|RDH14	REV__ENSG00000240857|ENST00000381249|RDH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.25701904296875	3	437.256843	1308.7487	1.1887	0.00051975	0.067768	2.9632E-05	1.2564	0.00054938	437.2568354988285	97.354	2.8643	97.354	96.484	99.348	-3.8147E-05					200	65	5	0	0	0	1.0408	1	12394	12394		27.644	0	1	1114100	+		57080	28964	39874	39939	62541	62541					0.10667413657233737
PDGIVHNDVQ	10	Unmodified	_PDGIVHNDVQ_					0	0	0			REV__ENSG00000204624|ENST00000294484|DISP3	REV__ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.8190307617188	2	547.26727	1092.51999	-1.449	-0.000793	1.3288	0.0007272	-0.12024	-6.5803E-05	547.2678931479978	43.853	0.81881	43.853	43.332	44.151	0					44	22	3	0	0	0	0.03519	1	4172	4172		25.574	14.063	1	822690	+		57081	28626	39875	39940	62542	62542					-0.022572234301378558
PDGPTIIL	8	Unmodified	_PDGPTIIL_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2375183105469	2	413.239461	824.46437	0.064624	2.6705E-05	-3.0455	-0.0012585	-2.9808	-0.0012318	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	1.0574	1	9120	9120		26.796	0	1	908900	+		57082	19944	39876	39941	62543	62543					0.04511595120197853
PDGPWTGASGP	11	Unmodified	_PDGPWTGASGP_					0	0	0			REV__ENST00000600448.5_1_19:39412224-39412332:-|nuORF	REV__ENST00000600448.5_1_19:39412224-39412332:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7513427734375	2	521.235439	1040.45632	-0.13224	-6.8926E-05	3.1277	0.0016303	2.9955	0.0015614	521.2368538305585	42.53	0.67852	42.298	42.006	42.684	-0.23186					47	17	4	0	0	0	0.024727	1	3799	3799		24.519	0	1	1180600	+		57083	35844	39877	39942	62544	62544					-0.062285838672323734
PDGSTPLELGD	11	Unmodified	_PDGSTPLELGD_					0	0	0			REV__nc|ENSG00000167562|Q9NV72|ZNF701	REV__nc|ENSG00000167562|Q9NV72|ZNF701	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.7742309570312	2	550.758943	1099.50333	-1.4034	-0.00077294	1.3037	0.00071803	-0.0997	-5.4911E-05	550.7595432403236	43.964	0.24774	43.819	43.71	43.958	-0.14471					10	6	2	0	0	0	0.024762	1	4151	4151		30.318	0	1	92765	+		57084	36896	39878	39943	62545	62545					-0.0424376910675619
PDGVIPVLTF	10	Unmodified	_PDGVIPVLTF_					0	0	0		ENST00000533507.5_1_11:47602194-47606030:+|nuORF;ENSG00000213619|ENST00000263774|NDUFS3;nc|ENSG00000213619|O75489-2|NDUFS3	ENST00000533507.5_1_11:47602194-47606030:+|nuORF;ENSG00000213619|ENST00000263774|NDUFS3	ENST00000533507.5_1_11:47602194-47606030:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.296875	2	529.30005	1056.58555	0.0093011	4.9231E-06	-4.4033	-0.0023307	-4.394	-0.0023257	529.2974144850223	106.51	0.8959	106.51	106.1	106.99	0.0018387					60	31	4	0	0	0	1.1307	1	13604	13604		26.693	0.62953	1	974930			57085	16318;10513	39879	39944	62546	62546					0.05951797762827482
PDGVLVAKRT	10	Unmodified	_PDGVLVAKRT_					0	0	0			REV__ENST00000202967.4_1_12:120741738-120750342:+|nuORF	REV__ENST00000202967.4_1_12:120741738-120750342:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.3157348632812	2	528.314023	1054.61349	-0.13654	-7.2137E-05	0.83471	0.00044099	0.69817	0.00036885	528.3146190415623	97.474	0.97646	97.313	96.862	97.838	-0.16106					47	21	3	0	0	0	1.1246	1	12075	12075		23.523	0.48021	1	223940	+		57086	29298	39880	39945	62547	62547					0.08837120742941806
PDHVLKNT	8	Unmodified	_PDHVLKNT_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2512512207031	2	462.250892	922.48723	-0.37947	-0.00017541	-0.22533	-0.00010416	-0.6048	-0.00027957	462.2507152282238	30.387	1.0917	30.143	29.82	30.911	-0.24415					63	25	4	0	0	0	0.5947	1	1942	1942		76.774	5.4784	1	5402100			57087	4256;18250	39881	39946	62548	62548					0.022886142376592034
PDHWIKRG	8	Unmodified	_PDHWIKRG_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;DNAH2|p.L4421V|1|0.25|ENSG00000183914|chr17:7833510-7833510|C/G|missense_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2976379394531	2	504.772326	1007.5301	-0.46197	-0.00023319	-0.42091	-0.00021247	-0.88288	-0.00044566	504.77206749832817	62.199	0.43386	61.972	61.65	62.084	-0.22663					19	11	2	0	0	0	0.027866	1	7157	7157		15.642	0	1	298050			57088	9292	39882	39947	62549	62549					0.026634290857714404
PDIGGVAVAPT	11	Unmodified	_PDIGGVAVAPT_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.771240234375	2	498.771657	995.528761	-0.00883	-4.4042E-06	-1.3272	-0.00066195	-1.336	-0.00066636	498.77089615614955	104.88	1.8232	104.88	104.27	106.1	0.00097656					165	59	5	0	0	0	1.0442	2	13416	13416;13423		26.693	5.746	1	5457500			57089	7859	39883	39948	62550;62551	62550					0.030817502063200664
PDIGGVAVAPT	11	Unmodified	_PDIGGVAVAPT_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7711181640625	2	498.771657	995.528761	0.21295	0.00010622	-1.5928	-0.00079443	-1.3798	-0.00068822	498.7707660735286	104.97	1.7566	104.97	104.34	106.1	-0.0016022					133	55	5	0	0	0	1.0442	1	13406	13406		26.693	0	1	5105000			57090	7859	39883	39948	62552	62552					0.030817502063200664
PDIGGVAVAPT	11	Unmodified	_PDIGGVAVAPT_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.77020263671875	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	0.98218	1	13175	13175		40.778	9.2484	1	3882100			57091	7859	39883	39948	62553	62553					0.030817502063200664
PDIGGVAVAPT	11	Unmodified	_PDIGGVAVAPT_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.77117919921875	2	498.771657	995.528761	-0.83576	-0.00041686	-0.27345	-0.00013639	-1.1092	-0.00055324	498.7714294292241	105.46	1.4997	105.33	104.64	106.14	-0.13099					137	54	4	0	0	0	1.018	3	13116	13116;13138;13149		32.812	4.9302	1	3947400			57092	7859	39883	39948	62554;62555;62556	62554					0.030817502063200664
PDIGGVAVAPT	11	Unmodified	_PDIGGVAVAPT_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7711181640625	2	498.771657	995.528761	0.20366	0.00010158	-1.3994	-0.00069797	-1.1957	-0.00059639	498.770832586192	105.37	1.3357	105.2	104.87	106.2	-0.16484					137	51	4	0	0	0	0.98904	3	13096	13096;13106;13127		39.253	4.5581	1	3775500			57093	7859	39883	39948	62557;62558;62559	62557					0.030817502063200664
PDIIAHLKSI	10	Unmodified	_PDIIAHLKSI_					0	0	0			REV__nc|ENSG00000112742|P33981-2|TTK	REV__nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8306884765625	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0122	1	10910	10910		44.377	1.981	1	6583300	+		57094	22023	39884	39949	62560	62560					0.10094577919812764
PDIIAHLKSI	10	Unmodified	_PDIIAHLKSI_					0	0	0			REV__nc|ENSG00000112742|P33981-2|TTK	REV__nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8307495117188	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.118	1	10902	10902		30.318	2.2362	1	5986700	+		57095	22023	39884	39949	62561	62561					0.10094577919812764
PDILLGYEI	9	Unmodified	_PDILLGYEI_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.7844848632812	2	516.784233	1031.55391	-1.0648	-0.00055026	0.79839	0.0004126	-0.26638	-0.00013766	516.7845295297542	93.976	0.97617	93.836	93.528	94.504	-0.13995					46	22	3	0	0	0	0.43973	1	11561	11561		63.306	0	1	945210			57096	857	39885	39950	62562	62562					0.039398050088948366
PDILTRLL	8	Unmodified	_PDILTRLL_					0	0	0			REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.27545166015625	2	470.794935	939.575317	0.36795	0.00017323	-0.38625	-0.00018184	-0.018296	-8.6138E-06	470.7943321285179	49.783	0.37694	49.632	49.368	49.745	-0.1512					16	9	2	0	0	0	0.027866	1	5122	5122		18.324	0	1	152000	+		57097	29188	39886	39951	62563	62563					0.10311234828293436
PDIPRPIKV	9	Unmodified	_PDIPRPIKV_					0	0	0		ENST00000528806.5_1_14:23598711-23607206:-|nuORF	ENST00000528806.5_1_14:23598711-23607206:-|nuORF	ENST00000528806.5_1_14:23598711-23607206:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.81884765625	2	517.821484	1033.62842	-0.45999	-0.00023819	-3.4532	-0.0017881	-3.9132	-0.0020263	517.8195675051055	91.848	1.1064	91.84	91.451	92.558	-0.0082932					74	26	4	0	0	0	0.70156	1	11586	11586		45.972	6.7194	1	1510800			57098	16191	39887	39952	62564	62564					0.1129461261095912
PDIPRPIKV	9	Unmodified	_PDIPRPIKV_					0	0	0		ENST00000528806.5_1_14:23598711-23607206:-|nuORF	ENST00000528806.5_1_14:23598711-23607206:-|nuORF	ENST00000528806.5_1_14:23598711-23607206:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	517.821484	1033.62842	0.2515	0.00013023	-4.5597	-0.0023611	-4.3082	-0.0022309	517.8189853050599	91.961	1.1386	91.819	91.357	92.495	-0.14131	0.0057883	-0.00098759	NaN	45.972	76	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1075800			57099	16191	39887	39952							0.1129461261095912
PDIPSYGSW	9	Unmodified	_PDIPSYGSW_					0	0	0		ENSG00000138068|ENST00000535679|SULT6B1	ENSG00000138068|ENST00000535679|SULT6B1	ENSG00000138068|ENST00000535679|SULT6B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2645263671875	2	511.234907	1020.45526	-1.076	-0.00055008	-4.0182	-0.0020542	-5.0942	-0.0026043	511.2324873960829	81.042	0.19736	81.066	80.929	81.126	0.023911					6	4	2	0	0	0	0.024541	1	10006	10006		23.042	21.947	1	33089			57100	5197	39888	39953	62565	62565					-0.05414798236131446
PDIQNEKI	8	Unmodified	_PDIQNEKI_					0	0	0			REV__CON__Q28107	REV__CON__Q28107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.27813720703125	2	478.756007	955.497461	-0.1595	-7.6362E-05	1.2293	0.00058854	1.0698	0.00051218	478.75587398009833	83.584	0.68848	83.584	83.309	83.997	0					17	15	2	0	0	0	0.027866	1	10484	10484		55.504	23.549	1	77448	+	+	57101	19571	39889	39954	62566	62566					0.01793177172248761
PDIRIAESF	9	Unmodified	_PDIRIAESF_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.25537109375	2	524.277106	1046.53966	-0.64399	-0.00033763	-0.96488	-0.00050587	-1.6089	-0.0008435	524.2762440666017	46.262	0.66765	46.06	45.669	46.336	-0.20226					25	17	2	0	0	0	0.024495	1	4396	4396		34.173	17.699	1	161190	+		57102	23968	39890	39955	62567	62567					0.01825152580613576
PDISVATLH	9	Unmodified	_PDISVATLH_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7581481933594	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	0.70186	3	13207	13207;13281;13311		45.952	11.779	1	5421500	+		57103	25271	39891	39956	62568;62569;62570	62568					0.024854810348642786
PDISVATLH	9	Unmodified	_PDISVATLH_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7584228515625	2	476.758549	951.502546	0.34901	0.00016639	-1.4907	-0.00071071	-1.1417	-0.00054432	476.75772494847956	103.11	2.084	103.12	102.24	104.32	0.0054245					130	51	5	0	0	0	0.70186	3	13169	13169;13202;13216		45.952	6.6991	1	5192800	+		57104	25271	39891	39956	62571;62572;62573	62571					0.024854810348642786
PDISVATLH	9	Unmodified	_PDISVATLH_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7578430175781	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.36105	2	13136	13136;13189		68.485	18.46	1	4565500	+		57105	25271	39891	39956	62574;62575	62574					0.024854810348642786
PDISVATLH	9	Unmodified	_PDISVATLH_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7576904296875	2	476.758549	951.502546	0.59757	0.0002849	-1.8144	-0.00086505	-1.2169	-0.00058015	476.7575883352349	103.57	1.7067	103.44	102.86	104.57	-0.12723					123	42	4	0	0	0	0.80658	3	12857	12857;12868;12888		38.806	8.3025	1	2742400	+		57106	25271	39891	39956	62576;62577;62578	62576					0.024854810348642786
PDISVATLH	9	Unmodified	_PDISVATLH_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7580261230469	2	476.758549	951.502546	-0.30085	-0.00014343	-0.97006	-0.00046248	-1.2709	-0.00060592	476.75800283223526	103.64	1.2436	103.51	102.91	104.16	-0.12783					67	32	3	0	0	0	0.80658	4	12884	12884;12893;12902;12961		38.806	5.2906	1	2423600	+		57107	25271	39891	39956	62579;62580;62581;62582	62579					0.024854810348642786
PDISVATLH	9	Unmodified	_PDISVATLH_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7579040527344	2	476.758549	951.502546	0.38446	0.00018329	-1.6457	-0.00078461	-1.2613	-0.00060132	476.75766316682655	103.71	1.8057	103.54	102.91	104.72	-0.16791					135	46	4	0	0	0	0.70186	4	12878	12867;12878;12915;12971		45.952	14.287	1	2252400	+		57108	25271	39891	39956	62583;62584;62585;62586	62584					0.024854810348642786
PDITLVHN	8	Unmodified	_PDITLVHN_					0	0	0			REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.74517822265625	2	454.745442	907.476331	0.059719	2.7157E-05	-1.482	-0.00067391	-1.4222	-0.00064675	454.744685532615	101.18	1.8063	101.19	100.7	102.5	0.0090332					106	41	5	0	0	0	1.0338	1	12879	12879		31.955	0.42505	1	4694600	+		57109	19852	39892	39957	62587	62587					0.01889211863374385
PDKAQHNDSE	10	Unmodified	_PDKAQHNDSE_					0	0	0		ENSG00000166923|ENST00000651154|GREM1	ENSG00000166923|ENST00000651154|GREM1	ENSG00000166923|ENST00000651154|GREM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.8226928710938	2	570.749441	1139.48433	-0.68396	-0.00039037	4.3953	0.0025086	3.7114	0.0021183	570.751908088821	51.844	0.44842	51.844	51.6	52.049	0					21	12	2	0	0	0	0.03519	1	5501	5501		39.253	0	1	293320			57110	7629	39893	39958	62588	62588					-0.07983305677817043
PDKAQHNDSE	10	Unmodified	_PDKAQHNDSE_					0	0	0		ENSG00000166923|ENST00000651154|GREM1	ENSG00000166923|ENST00000651154|GREM1	ENSG00000166923|ENST00000651154|GREM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.822021484375	2	570.749441	1139.48433	-0.46415	-0.00026491	3.7681	0.0021506	3.304	0.0018857	570.7515374123788	51.998	0.41143	51.851	51.609	52.021	-0.14735					21	11	2	0	0	0	0.03519	1	5522	5522		49.536	19.218	1	269870			57111	7629	39893	39958	62589	62589					-0.07983305677817043
PDKEKYEQ	8	Unmodified	_PDKEKYEQ_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7503051757812	2	518.750921	1035.48729	-0.52682	-0.00027329	-0.63104	-0.00032735	-1.1579	-0.00060064	518.7505367503043	27.201	1.2036	27.188	26.828	28.031	-0.012983					78	31	4	0	0	0	0.87148	1	1449	1449		53.351	5.4358	1	3272800			57112	7940	39894	39959	62590	62590					-0.029034305530103666
PDKFSLSAAI	10	Unmodified	_PDKFSLSAAI_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MSMS	OPSCC_39_ClassI_Rep-1	1	524.787353515625	2	524.787307	1047.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.73	1	111.73	111.23	112.23	0								0	0	0	0.76927	1	14104	14104		19.997	0.6368	1		+		57113	26909	39895	39960	62591	62591					0.038183232404207956
PDKHLGKTL	9	Unmodified	_PDKHLGKTL_					0	0	0		ENSG00000134146|ENST00000256538|DPH6	ENSG00000134146|ENST00000256538|DPH6	ENSG00000134146|ENST00000256538|DPH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.27423095703125	2	504.795466	1007.57638	-0.37368	-0.00018863	-0.059288	-2.9928E-05	-0.43297	-0.00021856	504.7953683985184	26.527	0.53444	26.359	26.188	26.723	-0.16816					19	12	2	0	0	0	0.024527	1	1415	1415		18.262	3.598	1	198500			57114	4759	39896	39961	62592	62592					0.0728944919718515
PDKRAAEVRRR	11	Unmodified	_PDKRAAEVRRR_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9327697753906	3	451.932248	1352.77491	1.0325	0.00046661	-0.11359	-5.1334E-05	0.9189	0.00041528	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0648	1	12308	12308		21.032	0	1	1299700	+		57115	23822	39897	39962	62593	62593					0.11263682828712263
PDKSPKIFIE	10	Unmodified	_PDKSPKIFIE_					0	0	0			REV__ENST00000378434.8_1_13:48986639-48986726:-|nuORF	REV__ENST00000378434.8_1_13:48986639-48986726:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	587.3263549804688	2	587.329339	1172.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.924	1	78.924	78.424	79.424	0								0	0	0	0.75928	1	9780	9780		47.96	3.5823	1		+		57116	31401	39898	39963	62594	62594					0.06470854337317178
PDKTRLLPSN	10	Unmodified	_PDKTRLLPSN_					0	0	0			REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	REV__ENST00000603906.1_1_X:48916566-48926191:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.822021484375	2	570.822212	1139.62987	-0.40014	-0.00022841	-0.477	-0.00027228	-0.87714	-0.00050069	570.8219979013844	52.005	1.8327	51.858	51.3	53.132	-0.14735					152	49	6	0	0	0	0.74632	1	5522	5522		64.207	4.089	1	14745000	+		57117	35900	39899	39964	62595	62595					0.06564201909031908
PDLAGAHGP	9	Unmodified	_PDLAGAHGP_					0	0	0		ENST00000329565.5_1_16:11770383-11770509:+|nuORF	ENST00000329565.5_1_16:11770383-11770509:+|nuORF	ENST00000329565.5_1_16:11770383-11770509:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.70843505859375	2	417.70886	833.403166	0.61519	0.00025697	-1.1267	-0.00047065	-0.51155	-0.00021368	417.7081773554599	98.884	1.0121	98.747	98.277	99.289	-0.13625					37	24	2	0	0	0	0.88411	1	12220	12220		33.516	8.0654	1	237310			57118	12321	39900	39965	62596	62596					-0.020199168592398564
PDLAPTVPI	9	Unmodified	_PDLAPTVPI_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2820129394531	2	461.765843	921.517133	-0.33431	-0.00015437	1.938	0.00089489	1.6037	0.00074051	461.7658688630101	76.264	0.93432	76.035	75.633	76.567	-0.22843					37	23	2	0	0	0	0.024323	1	9409	9409		44.117	13.613	1	165250	+		57119	19690	39901	39966	62597	62597					0.05323553182984142
PDLARSTL	8	Unmodified	_PDLARSTL_					0	0	0			REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7747497558594	2	436.745442	871.476331	0.26902	0.00011749	2.1514	0.0009396	2.4204	0.0010571	436.7465642909707	90.152	0.52231	90.136	89.795	90.317	-0.016716					16	12	2	0	0	0	0.027866	1	11385	11385		27.882	1.0861	1	146570	+		57120	22764	39902	39967	62598	62598					0.03545211863388431
PDLCLLEF	8	Unmodified	_PDLCLLEF_					0	0	0		ENST00000547381.1_1_12:109205173-109205371:-|nuORF	ENST00000547381.1_1_12:109205173-109205371:-|nuORF	ENST00000547381.1_1_12:109205173-109205371:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.242431640625	2	475.238604	948.462655	4.1237	0.0019597	3.7822	0.0017974	7.9058	0.0037572	475.24029553437725	17.696	1.0904	17.446	17.276	18.366	-0.25049					36	21	3	0	0	0	0.88442	1	196	196		52.299	0.96372	1	279350			57121	16530	39903	39968	62599	62599					-0.013637819600603507
PDLDYQGQAL	10	Unmodified	_PDLDYQGQAL_					0	0	0			REV__ENST00000476788.5_1_1:17303371-17307094:-|nuORF	REV__ENST00000476788.5_1_1:17303371-17307094:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.7915649414062	2	560.269478	1118.5244	-0.12394	-6.9442E-05	0.90528	0.0005072	0.78133	0.00043776	560.269630245517	52.076	0.48806	51.892	51.705	52.193	-0.18404					19	12	2	0	0	0	0.03519	1	5369	5369		46.457	23.877	1	290880	+		57122	22325	39904	39969	62600	62600					-0.03011759007222281
PDLEEKRA	8	Unmodified	_PDLEEKRA_					0	0	0		ENSG00000198168|ENST00000354193|SVIP	ENSG00000198168|ENST00000354193|SVIP	ENSG00000198168|ENST00000354193|SVIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.800048828125	2	479.253631	956.49271	0.013733	6.5815E-06	1.2624	0.00060502	1.2762	0.00061161	479.25443664380543	27.594	0.29564	27.437	27.225	27.521	-0.15664					9	6	2	0	0	0	0.027866	1	1493	1493		73.975	0	1	40755			57123	10103	39905	39970	62601	62601					0.012722930294785328
PDLEKKYS	8	Unmodified	_PDLEKKYS_					0	0	0		ENSG00000173175|ENST00000462833|ADCY5;nc|ENSG00000173175|O95622-2|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2579650878906	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.0574	1	13552	13552		26.796	0	1	6618800			57124	8349	39906	39971	62602	62602					0.012100613149982564
PDLEKKYS	8	Unmodified	_PDLEKKYS_					0	0	0		ENSG00000173175|ENST00000462833|ADCY5;nc|ENSG00000173175|O95622-2|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25787353515625	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.99042	1	13469	13469		38.806	5.2906	1	6674100			57125	8349	39906	39971	62603	62603					0.012100613149982564
PDLEKKYS	8	Unmodified	_PDLEKKYS_					0	0	0		ENSG00000173175|ENST00000462833|ADCY5;nc|ENSG00000173175|O95622-2|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	ENSG00000173175|ENST00000462833|ADCY5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.26190185546875	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	1.0338	1	13076	13076		31.955	2.8053	1	4976900			57126	8349	39906	39971	62604	62604					0.012100613149982564
PDLIAELLRRN	11	Unmodified	_PDLIAELLRRN_					0	0	0		ENSG00000015413|ENST00000690203|DPEP1	ENSG00000015413|ENST00000690203|DPEP1	ENSG00000015413|ENST00000690203|DPEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.25616455078125	3	437.257738	1308.75138	1.0571	0.00046224	-1.8864	-0.00082483	-0.82923	-0.00036259	437.25688759784646	97.353	2.9903	97.23	96.187	99.177	-0.12368					226	70	5	0	0	0	1.0592	1	12186	12186		22.562	2.2466	1	1091400			57127	931	39907	39972	62605	62605					0.10935824271541605
PDLISDALF	9	Unmodified	_PDLISDALF_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.7615661621094	2	495.760758	989.506963	0.84961	0.0004212	0.14034	6.9575E-05	0.98995	0.00049078	495.7609657176907	64.294	1.5456	64.294	63.88	65.426	0					100	42	5	0	0	0	0.43973	1	7571	7571		63.306	2.3343	1	10712000			57128	8937	39908	39973	62606	62606					0.011789454577524339
PDLITGFVL	9	Unmodified	_PDLITGFVL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7910461425781	2	487.781493	973.548434	-0.42137	-0.00020554	0.87032	0.00042452	0.44895	0.00021899	487.78188371602	82.5	0.52219	82.359	82.086	82.608	-0.14014					29	11	4	0	0	0	0.024535	1	9952	9952		12.207	0	1	807280	+		57129	36865	39909	39974	62607	62607					0.06060126217107609
PDLITGFVL	9	Unmodified	_PDLITGFVL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.781493	973.548434	-0.66529	-0.00032452	0.80572	0.00039301	0.14042	6.8496E-05	487.78121869019395	82.353	0.34009	82.379	82.147	82.487	0.025711	0.029313	0.00029136	NaN	17.365	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202500	+		57130	36865	39909	39974							0.06060126217107609
PDLITGFVL	9	Unmodified	_PDLITGFVL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.781493	973.548434	0.32452	0.0001583	0.51434	0.00025089	0.83887	0.00040918	487.7816612863085	82.505	0.39168	82.285	82.043	82.434	-0.22015	-0.064928	7.1028E-06	NaN	17.365	25	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1156700	+		57131	36865	39909	39974							0.06060126217107609
PDLITGFVL	9	Unmodified	_PDLITGFVL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.781493	973.548434	0.21237	0.00010359	0.25237	0.0001231	0.46474	0.00022669	487.7815282832087	82.557	0.39165	82.376	82.114	82.505	-0.18079	0.026009	-0.00024847	NaN	17.365	24	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	918660	+		57132	36865	39909	39974							0.06060126217107609
PDLKEHQI	8	Unmodified	_PDLKEHQI_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2613220214844	2	490.263999	978.513445	-0.092057	-4.5132E-05	-3.0794	-0.0015097	-3.1715	-0.0015549	490.26301759573107	104.45	0.85825	104.45	103.77	104.63	-0.0032196					41	20	3	0	0	0	0.85395	1	13272	13272		54.776	12.38	1	202140	+		57133	36747	39910	39975	62608	62608					0.023328834091330464
PDLLEFSDI	9	Unmodified	_PDLLEFSDI_					0	0	0			REV__CREB3L3|p.L28P|1|0.31|ENSG00000060566|chr19:4154954-4154954|T/C|missense_variant	REV__CREB3L3|p.L28P|1|0.31|ENSG00000060566|chr19:4154954-4154954|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.303466796875	2	524.763497	1047.51244	0.047835	2.5102E-05	-2.5622	-0.0013446	-2.5144	-0.0013195	524.7621890180773	71.924	0.78352	71.718	71.497	72.281	-0.20613					36	18	3	0	0	0	0.02435	1	8448	8448		42.396	8.2236	1	365950	+		57134	19615	39911	39976	62609	62609					-0.009413757504262321
PDLLFFLCA	9	Unmodified	_PDLLFFLCA_					0	0	0		ENSG00000162998|ENST00000295113|FRZB;FRZB|p.A173Qfs*34|1|0.21|ENSG00000162998|chr2:182858795-182858795|C/-|frameshift_variant	ENSG00000162998|ENST00000295113|FRZB	ENSG00000162998|ENST00000295113|FRZB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7803955078125	2	519.770071	1037.52559	-1.134	-0.00058941	0.93823	0.00048766	-0.19575	-0.00010174	519.7703805410033	25.158	0.64994	25.158	24.919	25.569	0					44	15	4	0	0	0	0.024535	1	1191	1191		18.324	0	1	714510			57135	7022	39912	39977	62610	62610					0.00832783827968342
PDLLPLSGPA	10	Unmodified	_PDLLPLSGPA_					0	0	0			REV__ENSG00000181588|ENST00000402693|MEX3D	REV__ENSG00000181588|ENST00000402693|MEX3D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.27703857421875	2	490.276575	978.538597	0.031804	1.5593E-05	-0.6404	-0.00031397	-0.60859	-0.00029838	490.27615555611675	76.425	0.76699	76.437	76.09	76.857	0.011635					47	18	3	0	0	0	0.60198	1	9357	9357		76.774	13.468	1	1583800	+		57136	27411	39913	39978	62611	62611					0.04846938211710494
PDLLVKKQSD	10	Unmodified	_PDLLVKKQSD_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.7861938476562	2	571.824421	1141.63429	-1.2966	-0.00074142	1.6784	0.00095973	0.38177	0.00021831	571.8256151553989	33.872	0.31318	33.696	33.545	33.859	-0.17557					9	7	2	0	0	0	0.03519	1	2449	2449		24.519	3.5723	1	68404	+		57137	21249	39914	39979	62612	62612					0.0691366633193411
PDLLVKKQSD	10	Unmodified	_PDLLVKKQSD_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	571.824421	1141.63429	-1.0533	-0.0006023	1.5017	0.00085873	0.44844	0.00025643	571.8250988741737	34.093	0.31972	34.093	33.972	34.292	0	0.1668	-7.4973E-05	NaN	37.812	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192070	+		57138	21249	39914	39979							0.0691366633193411
PDLLVKKQSD	10	Unmodified	_PDLLVKKQSD_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	571.824421	1141.63429	-1.04	-0.00059467	1.5778	0.00090225	0.53788	0.00030757	571.8252235724434	33.934	0.48765	33.991	33.81	34.298	0.056572	0.063852	1.205E-05	NaN	37.812	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163930	+		57139	21249	39914	39979							0.0691366633193411
PDLPKRLH	8	Unmodified	_PDLPKRLH_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2711181640625	2	488.290351	974.566149	-0.073162	-3.5724E-05	0.90211	0.00044049	0.82895	0.00040477	488.2906749496045	24.089	0.30585	23.912	23.74	24.046	-0.17773					11	6	3	0	0	0	0.027866	1	1008	1008		31.955	8.9124	1	46159			57140	6398	39915	39980	62613	62613					0.0778488626260696
PDLPPPPQP	9	Unmodified	_PDLPPPPQP_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.P2428S|1|0.65|ENSG00000065526|chr1:15933522-15933522|C/T|missense_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.771240234375	2	479.255643	956.496732	-0.10814	-5.1829E-05	0.66427	0.00031835	0.55612	0.00026653	479.25537333135384	74.874	0.8763	74.885	74.523	75.399	0.010368					41	21	3	0	0	0	0.024292	1	9071	9071		25.574	0	1	202610			57141	1307	39916	39981	62614	62614					0.016743825231856135
PDLPYICTAQ	10	Unmodified	_PDLPYICTAQ_					0	0	0		nc|ENSG00000122224|Q9HBG7-4|LY9;nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;ENSG00000122224|ENST00000263285|LY9;ENST00000479663.2_1_1:160783430-160784592:+|nuORF	nc|ENSG00000122224|Q9HBG7-4|LY9	nc|ENSG00000122224|Q9HBG7-4|LY9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.322998046875	2	560.7708	1119.52705	-0.35217	-0.00019749	-0.25802	-0.00014469	-0.61019	-0.00034218	560.7704856496322	67.536	0.75827	67.248	66.951	67.71	-0.28834					33	18	2	0	0	0	0.03519	1	8099	8099		9.7057	0	1	169500			57142	18227	39917	39982	62615	62615					-0.027936268739495063
PDLQPGVLAS	10	Unmodified	_PDLQPGVLAS_					0	0	0		ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL;ENST00000502438.6_1_16:1449373-1453182:-|nuORF	ENST00000503648.1_1_16:1451355-1464692:-|nuORF	ENST00000503648.1_1_16:1451355-1464692:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.77093505859375	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	1.0719	1	13084	13084		36.447	2.9312	1	3882100			57143	1221	39918	39983	62616	62616					0.03081750206331435
PDLRENVL	8	Unmodified	_PDLRENVL_					0	0	0		ENST00000317025.12_1_8:38187341-38189007:-|nuORF	ENST00000317025.12_1_8:38187341-38189007:-|nuORF	ENST00000317025.12_1_8:38187341-38189007:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.802734375	2	478.263999	954.513445	-1.1383	-0.00054442	1.7237	0.00082439	0.58539	0.00027997	478.26439225510245	33.875	0.69826	33.699	33.43	34.128	-0.17557					29	17	3	0	0	0	0.027866	1	2400	2400		50.025	9.4519	1	299560			57144	12155	39919	39984	62617	62617					0.03436883409131042
PDLTLEVASL	10	Unmodified	_PDLTLEVASL_					0	0	0			REV__ENST00000504241.1_1_5:180622168-180622936:-|nuORF	REV__ENST00000504241.1_1_5:180622168-180622936:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2506103515625	2	529.292422	1056.57029	0.76367	0.0004042	-0.99585	-0.00052709	-0.23218	-0.00012289	529.2921893762607	51.352	0.42403	51.241	51.051	51.475	-0.11163					22	10	3	0	0	0	0.03519	1	5275	5275		20.947	0	1	273770	+		57145	33978	39920	39985	62618	62618					0.0442688617499698
PDLVGLLLA	9	Unmodified	_PDLVGLLLA_					0	0	0		ENST00000405486.5_2_22:41641775-41642279:-|nuORF	ENST00000405486.5_2_22:41641775-41642279:-|nuORF	ENST00000405486.5_2_22:41641775-41642279:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7427978515625	2	455.784036	909.553519	-0.095283	-4.3428E-05	3.3812	0.0015411	3.286	0.0014977	455.78539479450745	45.553	0.80067	45.454	45.12	45.921	-0.099449					38	22	3	0	0	0	0.024535	1	4370	4370		12.207	0	1	312100			57146	13719	39921	39986	62619	62619					0.0951243007971243
PDMFPLIND	9	Unmodified	_PDMFPLIND_					0	0	0			REV__ENSG00000164265|ENST00000296694|SCGB3A2	REV__ENSG00000164265|ENST00000296694|SCGB3A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.323486328125	2	531.252243	1060.48993	1.59	0.00084469	1.8932	0.0010058	3.4832	0.0018504	531.2531690769987	36.552	0.76253	36.353	36.093	36.855	-0.19829					27	18	2	0	0	0	0.024292	1	2873	2873		32.812	8.2932	1	746430	+		57147	25726	39922	39987	62620	62620					-0.03789298419678744
PDMVKDIIN	9	Unmodified	_PDMVKDIIN_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7999877929688	2	522.773342	1043.53213	-0.37316	-0.00019508	0.0040417	2.1129E-06	-0.36912	-0.00019297	522.7719664511933	48.501	0.38961	48.568	48.339	48.729	0.066795					14	10	2	0	0	0	0.024477	1	4883	4883		27.882	12.24	1	95050			57148	1941	39923	39988	62621	62621					0.012106769886941038
PDNDRFVL	8	Unmodified	_PDNDRFVL_					0	0	0		nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.27996826171875	2	488.248349	974.482145	-0.71077	-0.00034703	2.776	0.0013554	2.0652	0.0010083	488.2492194118783	23.494	0.62643	23.433	23.229	23.856	-0.060862					24	14	2	0	0	0	0.027866	1	911	911		23.042	0	1	84086			57149	817	39924	39989	62622	62622					-0.006116896249409365
PDNGNAQLLL	10	Unmodified	_PDNGNAQLLL_					0	0	0			REV__ENSG00000089250|ENST00000317775|NOS1	REV__ENSG00000089250|ENST00000317775|NOS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.3284912109375	2	527.780013	1053.54547	-0.09824	-5.1849E-05	3.6883	0.0019466	3.59	0.0018947	527.7816281203659	77.744	0.7224	77.582	77.441	78.164	-0.16196					22	16	2	0	0	0	0.03519	1	9232	9232		47.657	5.2612	1	64188	+		57150	20851	39925	39990	62623	62623					0.02084251092287559
PDNHVVVEQSI	11	Unmodified	_PDNHVVVEQSI_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.55029296875	3	412.878815	1235.61462	-0.16934	-6.9918E-05	-0.72592	-0.00029972	-0.89526	-0.00036963	412.87864506594923	29.309	0.32216	29.387	29.128	29.45	0.078344					10	7	2	0	0	0	0.024751	1	1733	1733		27.644	2.5179	1	37574			57151	8458	39926	39991	62624	62624					0.006232903212094243
PDNKRKLS	8	Unmodified	_PDNKRKLS_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2778625488281	2	479.277441	956.540328	-0.71663	-0.00034346	3.8434	0.0018421	3.1268	0.0014986	479.2799764755381	80.941	2.5403	80.965	79.605	82.145	0.023911					119	61	4	0	0	0	1.0198	1	10021	10021		34.173	6.2903	1	1543800			57152	1012	39927	39992	62625	62625					0.06031992020314192
PDNKRKLS	8	Unmodified	_PDNKRKLS_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MSMS	OPSCC_39_ClassI_Rep-3	3	479.277587890625	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.223	1	86.247	85.747	86.747	0.023666								0	0	0	0.47887	1	10752	10752		56.721	7.2795	1				57153	1012	39927	39992	62626	62626					0.06031992020314192
PDNRTWSEV	9	Unmodified	_PDNRTWSEV_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.8176879882812	2	552.259445	1102.50434	-0.19509	-0.00010774	4.2209	0.002331	4.0258	0.0022233	552.2630003721644	41.612	0.52357	41.635	41.182	41.706	0.023003					22	14	3	0	0	0	0.024541	1	3702	3702		26.693	10.22	1	150180			57154	6030	39928	39993	62627	62627					-0.04281509947190898
PDNSQPDVP	9	Unmodified	_PDNSQPDVP_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.7904052734375	2	484.719621	967.42469	0.41078	0.00019911	3.4773	0.0016855	3.8881	0.0018846	484.72118034981276	37.064	0.53933	36.871	36.537	37.076	-0.193					23	13	2	0	0	0	0.024	1	2916	2916		37.159	0	1	317720	+		57155	28991	39929	39994	62628	62628					-0.06032576621191765
PDNSQPDVP	9	Unmodified	_PDNSQPDVP_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.719621	967.42469	0.77382	0.00037509	3.2345	0.0015678	4.0083	0.0019429	484.7211641863944	37.046	0.46983	36.837	36.605	37.075	-0.2092	-0.017413	-3.4834E-05	NaN	37.159	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240380	+		57156	28991	39929	39994							-0.06032576621191765
PDNTSVISL	9	Unmodified	_PDNTSVISL_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;DOCK2|p.N1321Kfs*10|1|0.26|ENSG00000134516|chr5:170045899-170045900|-/A|frameshift_variant;DOCK2|p.K268Rfs*9|1|0.19|ENSG00000134516|chr5:169689292-169689292|A/-|frameshift_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.7756042480469	2	473.248015	944.481476	-0.22187	-0.000105	0.38852	0.00018387	0.16665	7.8867E-05	473.248021542356	98.532	0.47911	98.367	98.158	98.637	-0.16521					16	10	2	0	0	0	0.023655	1	12194	12194		51.193	0	1	72460			57157	4804	39930	39995	62629	62629					0.00701470935348425
PDPDSYARPY	10	Unmodified	_PDPDSYARPY_					0	0	0			REV__nc|ENSG00000183072|P52952-3|NKX2-5	REV__nc|ENSG00000183072|P52952-3|NKX2-5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	591.2987670898438	2	590.767103	1179.51965	-0.65889	-0.00038925	-2.6584	-0.0015705	-3.3173	-0.0019598	590.765572434778	27.643	0.4772	27.401	27.119	27.596	-0.24217					14	10	2	0	0	0	0.03519	1	1518	1518		58.782	23.164	1	95066	+		57158	27534	39931	39996	62630	62630					-0.06292643150004551
PDPDSYARPY	10	Unmodified	_PDPDSYARPY_					0	0	0			REV__nc|ENSG00000183072|P52952-3|NKX2-5	REV__nc|ENSG00000183072|P52952-3|NKX2-5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	591.2990112304688	2	590.767103	1179.51965	-1.4556	-0.00085994	-2.0776	-0.0012274	-3.5332	-0.0020873	590.7659943978899	27.486	0.4306	27.317	27.057	27.487	-0.16816					19	9	3	0	0	0	0.03519	1	1492	1492		21.96	2.5999	1	90128	+		57159	27534	39931	39996	62631	62631					-0.06292643150004551
PDPERIQRLRR	11	Unmodified	_PDPERIQRLRR_					0	0	0		ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.73565673828125	3	479.279536	1434.81678	-0.37791	-0.00018112	4.4377	0.0021269	4.0598	0.0019458	479.28189331470156	59.722	0.40189	59.808	59.579	59.98	0.085682					16	10	2	0	0	0	0.024792	1	6777	6777		18.531	6.0982	1	183460			57160	6491	39932	39997	62632	62632					0.11676238517225102
PDPGAHPI	8	Unmodified	_PDPGAHPI_					0	0	0		ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.20538330078125	2	402.205953	802.397353	0.85638	0.00034444	-1.7043	-0.00068547	-0.8479	-0.00034103	402.2052083095665	95.436	1.7876	95.439	94.87	96.657	0.0033722					115	41	4	0	0	0	1.0572	1	12192	12192		28.254	4.0515	1	7412800			57161	16647	39933	39998	62633	62633					-0.01175015370915844
PDPGAHPI	8	Unmodified	_PDPGAHPI_					0	0	0		ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	ENST00000553932.5_1_14:39307256-39307550:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.20574951171875	2	402.205953	802.397353	0.92344	0.00037141	-1.6792	-0.00067539	-0.75578	-0.00030398	402.2052180634848	96.013	2.0859	95.876	95.199	97.285	-0.1367					136	47	4	0	0	0	1.0133	1	11821	11821		35.201	1.6851	1	5342800			57162	16647	39933	39998	62634	62634					-0.01175015370915844
PDPGKFKLL	9	Unmodified	_PDPGKFKLL_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2796936035156	2	507.80276	1013.59097	0.029553	1.5007E-05	-4.4598	-0.0022647	-4.4303	-0.0022497	507.8002575729348	24.2	0.48406	23.985	23.733	24.218	-0.2151					14	9	2	0	0	0	0.024262	1	1046	1046		23.042	4.7181	1	95709			57163	18412	39934	39999	62635	62635					0.08471521345325073
PDPGVRSFGF	10	Unmodified	_PDPGVRSFGF_					0	0	0		ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8037109375	2	539.769448	1077.52434	-0.73652	-0.00039755	2.8616	0.0015446	2.1251	0.0011471	540.274066702715	28.945	0.12682	28.776	28.685	28.812	-0.16897					4	2	2	0	0	0	0.03519	1	1729	1729		27.882	1.0861	1	17871			57164	4644	39935	40000	62636	62636					-0.011317142165808036
PDPTEMNVI	9	Unmodified	_PDPTEMNVI_					0	0	0			REV__ENSG00000068097|ENST00000184956|HEATR6	REV__ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.28204345703125	2	508.241875	1014.4692	1.6282	0.00082752	2.2483	0.0011427	3.8765	0.0019702	508.2425442007346	23.481	0.53685	23.29	23.079	23.616	-0.19117					26	12	3	0	0	0	0.024262	1	939	939		47.916	10.756	1	160670	+		57165	20372	39936	40001	62637	62637					-0.037458887993466305
PDPVSKRL	8	Unmodified	_PDPVSKRL_					0	0	0		ENST00000498481.6_1_1:155030770-155034829:+|nuORF;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15	ENST00000498481.6_1_1:155030770-155034829:+|nuORF	ENST00000498481.6_1_1:155030770-155034829:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2576904296875	2	456.269084	910.523616	-0.36523	-0.00016664	4.4491	0.00203	4.0838	0.0018633	456.2711705189222	33.476	0.39885	33.483	33.288	33.687	0.0066223					13	10	2	0	0	0	0.027866	1	2387	2387		34.173	7.3764	1	67431			57166	5660	39937	40002	62638	62638					0.06477491134376123
PDQEQPDL	8	Unmodified	_PDQEQPDL_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.79522705078125	2	471.214172	940.413791	-0.68164	-0.0003212	-2.3852	-0.001124	-3.0669	-0.0014452	471.2129439895938	42.728	0.57279	42.502	42.22	42.793	-0.22597					29	14	3	0	0	0	0.027866	1	3893	3893		47.657	7.0847	1	417770			57167	7259	39938	40003	62639	62639					-0.05879978995471902
PDQEVKKVE	9	Unmodified	_PDQEVKKVE_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2694702148438	2	536.287671	1070.56079	-1.0196	-0.00054682	1.8314	0.00098213	0.81172	0.00043531	536.2884122510853	29.519	0.32086	29.522	29.351	29.672	0.0031357					15	7	3	0	0	0	0.024209	1	1810	1810		47.657	0	1	79729	+		57168	26200	39939	40004	62640	62640					0.028331178894632103
PDQHIAVQY	9	Unmodified	_PDQHIAVQY_					0	0	0			REV__nc|ENSG00000107669|O95260-2|ATE1	REV__nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.766845703125	2	535.766906	1069.51926	-0.65831	-0.0003527	0.13339	7.1463E-05	-0.52492	-0.00028123	535.7668438126454	30.316	1.3717	30.167	29.792	31.164	-0.14952					111	32	5	0	0	0	0.62163	1	1920	1920		51.335	1.8939	1	3364100	+		57169	36552	39940	40005	62641	62641					-0.012720180792030078
PDQLLGKGPE	10	Unmodified	_PDQLLGKGPE_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2388916015625	2	527.282389	1052.55022	0.16771	8.8429E-05	0.30789	0.00016235	0.4756	0.00025078	527.2822661112414	68.172	0.40617	67.938	67.636	68.042	-0.23376					11	9	2	0	0	0	0.03519	1	7841	7841		23.523	13.257	1	177400	+		57170	22148	39941	40006	62642	62642					0.026051352350577872
PDQLLVMAL	9	Unmodified	_PDQLLVMAL_					0	0	0			REV__ENSG00000158169|ENST00000289081|FANCC	REV__ENSG00000158169|ENST00000289081|FANCC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2826232910156	2	500.280803	998.547053	0.38192	0.00019107	4.271	0.0021367	4.6529	0.0023278	500.283099602802	102.6	1.571	102.47	101.18	102.75	-0.12931					58	36	4	0	0	0	0.80003	1	12736	12736		39.253	2.0937	1	697070	+		57171	25180	39942	40007	62643	62643					0.04772168856675307
PDQREEPSH	9	Unmodified	_PDQREEPSH_					0	0	0			REV__ENSG00000119138|ENST00000377126|KLF9	REV__ENSG00000119138|ENST00000377126|KLF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2786865234375	2	547.746702	1093.47885	-1.0435	-0.00057159	0.41503	0.00022733	-0.6285	-0.00034426	547.7467064351648	32.819	2.9736	32.819	30.92	33.894	0					157	76	3	0	0	0	0.024319	1	2054	2054		56.721	41.856	1	1244300	+		57172	22441	39943	40008	62644	62644					-0.06414984469620322
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.268798828125	3	512.985457	1535.93454	-0.13069	-6.7042E-05	-0.14524	-7.4503E-05	-0.27593	-0.00014155	513.3195955066324	102.86	0.12278	102.74	102.63	102.75	-0.12783					4	2	2	0	0	0	0.024904	1	12795	12795		0.3405	0	1	59992	+		57173	20753	39944	40009	62645	62645					0.18801235896557955
PDQRYWYMYN	10	Unmodified	_PDQRYWYMYN_					0	0	0			REV__nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	REV__nc|ENSG00000211724|A0A0A6YYG2|TRBV6-6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7691955566406	3	479.208167	1434.60267	-0.073975	-3.5449E-05	-0.27788	-0.00013316	-0.35186	-0.00016861	479.2079964599034	40.804	0.6809	40.668	40.418	41.099	-0.13553					48	17	4	0	0	0	0.03519	1	3589	3589		11.097	0.99287	1	1450400	+		57174	37102	39945	40010	62646	62646					-0.09724649693657739
PDQTLGFPSL	10	Unmodified	_PDQTLGFPSL_					0	0	0		nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7803955078125	2	537.776939	1073.53933	-1.522	-0.00081848	3.5505	0.0019094	2.0285	0.0010909	537.7810820676212	35.348	1.04	35.326	35.013	36.053	-0.021763					59	27	3	0	0	0	0.21865	2	2696	2696;2720		118.74	5.4068	1	10690000			57175	4760	39946	40011	62647;62648	62647					0.005497328607589225
PDRAPRSPGQ	10	Unmodified	_PDRAPRSPGQ_					0	0	0		ENST00000254325.8_1_19:14073549-14074364:-|nuORF	ENST00000254325.8_1_19:14073549-14074364:-|nuORF	ENST00000254325.8_1_19:14073549-14074364:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3271484375	2	540.780879	1079.5472	-1.6985	-0.00091849	1.2973	0.00070157	-0.40113	-0.00021692	540.781558989976	48.976	0.64603	49.05	48.596	49.242	0.074196					21	17	2	0	0	0	0.03519	1	4949	4949		22.58	3.2197	1	275950			57176	11377	39947	40012	62649	62649					0.010613049008952657
PDREGKVI	8	Unmodified	_PDREGKVI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.313720703125	2	457.258717	912.50288	-0.06804	-3.1112E-05	0.69818	0.00031925	0.63014	0.00028814	457.25901812287935	44.155	0.51745	44.192	43.959	44.476	0.0369					19	14	2	0	0	0	0.027866	1	4175	4175		63.306	0	1	183210			57177	6401	39948	40013	62650	62650					0.04312900754723614
PDRGVLGGVLF	11	Unmodified	_PDRGVLGGVLF_					0	0	0		nc|ENSG00000185437|P55822|SH3BGR	nc|ENSG00000185437|P55822|SH3BGR	nc|ENSG00000185437|P55822|SH3BGR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.3160400390625	2	565.321848	1128.62914	0.45852	0.00025921	-1.0212	-0.00057731	-0.56269	-0.0003181	565.3211033801884	36.897	0.4341	36.897	36.724	37.158	0					23	10	3	0	0	0	0.02479	1	2959	2959		37.508	1.0614	1	641900			57178	18591	39949	40014	62651	62651					0.06997407259973443
PDRLFVVMVTI	11	Unmodified	_PDRLFVVMVTI_					0	0	0			REV__nc|ENSG00000100034|P49593-2|PPM1F	REV__nc|ENSG00000100034|P49593-2|PPM1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.26605224609375	3	430.581053	1288.72133	-0.32289	-0.00013903	3.113	0.0013404	2.7901	0.0012014	430.5824740088871	48.999	0.39481	48.846	48.575	48.97	-0.15277					16	10	2	0	0	0	0.024742	1	4971	4971		38.714	0	1	97114	+		57179	21038	39950	40015	62652	62652					0.08851749282007404
PDRLSNKLL	9	Unmodified	_PDRLSNKLL_					0	0	0		nc|ENSG00000187715|Q3ZCT8-2|KBTBD12;ENSG00000187715|ENST00000405109|KBTBD12	nc|ENSG00000187715|Q3ZCT8-2|KBTBD12	nc|ENSG00000187715|Q3ZCT8-2|KBTBD12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.3143310546875	2	528.314023	1054.61349	0.75618	0.0003995	-0.14705	-7.7689E-05	0.60913	0.00032181	528.3141069659536	97.333	1.0258	97.21	96.706	97.732	-0.12368					46	22	3	0	0	0	0.87448	1	12058	12058		34.173	0	1	207000			57180	9650	39951	40016	62653	62653					0.08837120742941806
PDRNVALFV	9	Unmodified	_PDRNVALFV_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7696533203125	2	515.787641	1029.56073	0.38269	0.00019739	3.3739	0.0017402	3.7565	0.0019376	516.2897225397974	51.03	0.48661	50.753	50.48	50.967	-0.27643					27	12	3	0	0	0	0.024541	1	5165	5165		20.482	0	1	335920			57181	6024	39952	40017	62654	62654					0.04713162680127425
PDRQRRKREL	10	Unmodified	_PDRQRRKREL_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9312744140625	3	451.932248	1352.77491	-0.033263	-1.5033E-05	0.89189	0.00040308	0.85863	0.00038804	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.1295	1	12386	12386		26.063	3.5018	1	1141700			57182	7173	39953	40018	62655	62655					0.11263682828735
PDRSSTAEL	9	Unmodified	_PDRSSTAEL_					0	0	0			REV__ENSG00000112787|ENST00000680143|FBRSL1	REV__ENSG00000112787|ENST00000680143|FBRSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.24163818359375	2	488.240721	974.466889	-0.15655	-7.6436E-05	-0.67721	-0.00033064	-0.83376	-0.00040708	488.2400342632208	52.136	1.5392	51.989	51.371	52.91	-0.14735					106	41	4	0	0	0	0.72494	1	5591	5591		44.377	3.8046	1	1955300	+		57183	22026	39954	40019	62656	62656					-0.021366012128055445
PDSGNYRKGL	10	Unmodified	_PDSGNYRKGL_					0	0	0			REV__nc|ENSG00000173826|Q9H252-3|KCNH6	REV__nc|ENSG00000173826|Q9H252-3|KCNH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.7821044921875	2	553.783087	1105.55162	1.3953	0.0007727	-2.5157	-0.0013931	-1.1204	-0.00062044	553.7817553776231	82.757	1.1115	82.647	82.379	83.491	-0.11006					40	25	2	0	0	0	0.72729	1	10321	10321		65.465	7.2355	1	1312100	+		57184	26812	39955	40020	62657	62657					0.0030676932381084043
PDSGPEAGGL	10	Unmodified	_PDSGPEAGGL_					0	0	0		ENSG00000164929|ENST00000309982|BAALC;nc|ENSG00000164929|Q8WXS3-3|BAALC;nc|ENSG00000164929|Q8WXS3-1|BAALC;nc|ENSG00000164929|Q8WXS3-6|BAALC;nc|ENSG00000164929|Q8WXS3-5|BAALC;nc|ENSG00000164929|Q8WXS3-4|BAALC	ENSG00000164929|ENST00000309982|BAALC	ENSG00000164929|ENST00000309982|BAALC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.28179931640625	2	450.208889	898.403226	-0.6073	-0.00027341	3.0103	0.0013553	2.403	0.0010818	450.210158446553	50.857	0.32713	50.944	50.75	51.077	0.087006					14	8	2	0	0	0	0.03519	1	5308	5308		16.473	0	1	105040			57185	7342	39956	40021	62658	62658					-0.050039616499134354
PDSLILPLL	9	Unmodified	_PDSLILPLL_					0	0	0		nc|ENSG00000157554|P11308-6|ERG;ENST00000468474.5_1_21:39772286-39947633:-|nuORF	nc|ENSG00000157554|P11308-6|ERG	nc|ENSG00000157554|P11308-6|ERG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.80706787109375	2	490.804968	979.595384	0.60343	0.00029617	0.15894	7.8009E-05	0.76237	0.00037418	490.80522986585635	96.276	1.5143	96.283	95.988	97.502	0.0065079					93	34	5	0	0	0	0.4855	1	12232	12232		60.294	4.7898	1	4546800			57186	14872	39957	40022	62659	62659					0.1047698576824132
PDSPPPAYG	9	Unmodified	_PDSPPPAYG_					0	0	0			REV__nc|ENSG00000185480|Q9NWS1-2|PARPBP	REV__nc|ENSG00000185480|Q9NWS1-2|PARPBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.27386474609375	2	450.708525	899.402498	-0.16546	-7.4574E-05	1.2451	0.00056116	1.0796	0.00048658	450.7100846588889	92.121	0.11409	92.112	92.045	92.159	-0.0082932					4	2	2	0	0	0	0.024535	1	11649	11649		12.207	0	1	37308	+		57187	27767	39958	40023	62660	62660					-0.051227562989538455
PDSQEKPAQ	9	Unmodified	_PDSQEKPAQ_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71;nc|ENSG00000177354|Q711Q0-3|CEFIP	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3040771484375	2	500.240721	998.466889	0.77263	0.0003865	-0.58792	-0.0002941	0.18471	9.2401E-05	500.7426561595404	58.878	0.17779	58.878	58.787	58.965	0					5	4	2	0	0	0	0.024506	1	6695	6695		23.042	12.177	1	65292			57188	8730	39959	40024	62661	62661					-0.0324060121280354
PDSQVWPT	8	Unmodified	_PDSQVWPT_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000576972.5_1_16:67914666-67915321:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2199401855469	2	465.2218	928.429047	-0.16145	-7.5108E-05	-4.2003	-0.0019541	-4.3618	-0.0020292	465.21984905341714	33.809	1.1606	33.805	33.449	34.61	-0.0045624					85	29	5	0	0	0	0.88442	1	2440	2440		52.299	0	1	8243200			57189	1052	39960	40025	62662	62662					-0.03803067407625349
PDSRGLIVK	9	Unmodified	_PDSRGLIVK_					0	0	0			REV__ENSG00000162365|ENST00000371891|CYP4A22;REV__nc|ENSG00000187048|Q02928-2|CYP4A11	REV__ENSG00000162365|ENST00000371891|CYP4A22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.77520751953125	2	492.795466	983.57638	-0.62368	-0.00030735	-0.17804	-8.7739E-05	-0.80172	-0.00039509	492.79519933114443	51.74	0.83191	51.593	51.263	52.095	-0.14735					41	23	2	0	0	0	0.024412	1	5483	5483		40.573	6.4001	1	1666300			57190	25427;27908	39961	40026	62663	62663					0.08393449197183145
PDSSKKLII	9	Unmodified	_PDSSKKLII_					0	0	0			REV__ENST00000296953.6_1_5:172483428-172507635:+|nuORF	REV__ENST00000296953.6_1_5:172483428-172507635:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8027038574219	2	500.8055	999.596446	-0.29465	-0.00014756	1.5118	0.00075713	1.2172	0.00060957	500.80568568889174	57.298	0.30004	57.393	57.165	57.465	0.095306					11	7	2	0	0	0	0.024405	1	6342	6342		27.882	10.517	1	208660	+		57191	30007	39962	40027	62664	62664					0.09663200137140393
PDTLKIVE	8	Unmodified	_PDTLKIVE_					0	0	0			REV__ENSG00000180104|ENST00000512944|EXOC3	REV__ENSG00000180104|ENST00000512944|EXOC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2394104003906	2	457.7633	913.512048	0.054038	2.4737E-05	1.4293	0.00065428	1.4833	0.00067902	457.7637259379272	34.192	0.85418	34.192	33.59	34.444	0					48	21	4	0	0	0	0.027866	1	2453	2453		18.324	0	1	1250400	+		57192	27315	39963	40028	62665	62665					0.05183249320384675
PDTLNELPY	9	Unmodified	_PDTLNELPY_					0	0	0			REV__ENSG00000184459|ENST00000300399|BPIFC	REV__ENSG00000184459|ENST00000300399|BPIFC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3394165039062	2	531.261122	1060.50769	0.41591	0.00022096	-1.3431	-0.00071355	-0.92721	-0.00049259	531.2605433018002	59.25	0.60402	59.008	58.738	59.342	-0.24166					21	14	2	0	0	0	0.024292	1	6511	6511		40.778	0	1	210990	+		57193	27673	39964	40029	62666	62666					-0.020142598931670364
PDTNERVQP	9	Unmodified	_PDTNERVQP_					0	0	0			REV__ENST00000484669.6_1_1:6685268-6693134:+|nuORF	REV__ENST00000484669.6_1_1:6685268-6693134:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2391967773438	2	528.259445	1054.50434	-0.44371	-0.00023439	-1.4159	-0.00074798	-1.8596	-0.00098237	528.2588785473306	63.282	0.45562	63.031	62.809	63.264	-0.25141					18	11	2	0	0	0	0.024523	1	7368	7368		21.96	0	1	254730	+		57194	33545	39965	40030	62667	62667					-0.02073509947194907
PDTTHYGTR	9	Unmodified	_PDTTHYGTR_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2633056640625	2	524.246338	1046.47812	-0.021265	-1.1148E-05	4.0795	0.0021386	4.0582	0.0021275	524.2487455102389	54.242	0.12332	53.997	53.949	54.073	-0.2453					5	3	2	0	0	0	0.024397	1	5740	5740		56.721	14.325	1	128680	+		57195	20215	39966	40031	62668	62668					-0.043257791186761096
PDTYFTLQP	9	Unmodified	_PDTYFTLQP_					0	0	0			REV__ENST00000473640.1_1_1:176992565-177001685:-|nuORF	REV__ENST00000473640.1_1_1:176992565-177001685:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.3223876953125	2	541.263665	1080.51278	-1.9553	-0.0010583	0.21267	0.00011511	-1.7426	-0.00094321	541.2652435859511	60.018	0.15318	60.097	60.011	60.165	0.078884					5	3	2	0	0	0	0.024436	1	6812	6812		30.504	0	1	53530	+		57196	24815	39967	40032	62669	62669					-0.02425956030560883
PDVEGQITNL	10	Unmodified	_PDVEGQITNL_					0	0	0			REV__ENST00000418303.1_1_7:43958366-43959461:+|nuORF	REV__ENST00000418303.1_1_7:43958366-43959461:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.8218383789062	2	543.277303	1084.54005	0.06437	3.4971E-05	3.2166	0.0017475	3.281	0.0017825	543.2788173024816	68.051	0.85817	67.817	67.261	68.119	-0.23376					27	20	2	0	0	0	0.03519	1	7849	7849		58.246	0	1	223170	+		57197	32115	39968	40033	62670	62670					0.001165275098173879
PDVEVHGPDW	10	Unmodified	_PDVEVHGPDW_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.7617797851562	2	575.76182	1149.50909	0.46667	0.00026869	-0.89996	-0.00051816	-0.43329	-0.00024947	575.7611625023721	17.052	0.51112	16.91	16.765	17.276	-0.14278					31	13	3	0	0	0	1.1329	1	114	114		27.882	1.1893	1	380980			57198	4084	39969	40034	62671	62671					-0.05968625804439398
PDVIRRVL	8	Unmodified	_PDVIRRVL_					0	0	0			REV__nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	REV__nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7900390625	2	484.306001	966.597449	-0.47646	-0.00023075	-2.1102	-0.001022	-2.5867	-0.0012527	484.3047582443363	45.9	0.3376	45.951	45.758	46.096	0.051395					13	9	2	0	0	0	0.027866	1	4452	4452		38.806	25.847	1	194290	+		57199	27695	39970	40035	62672	62672					0.11281459296708363
PDVKIVLII	9	Unmodified	_PDVKIVLII_					0	0	0		ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	ENSG00000185467|ENST00000327442|KPNA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.323486328125	2	505.336436	1008.65832	-0.68515	-0.00034623	1.7638	0.00089131	1.0787	0.00054508	505.8387988902427	38.996	0.10741	38.897	38.807	38.914	-0.098755					4	2	2	0	0	0	0.024477	1	3297	3297		9.7057	0	1	48606			57200	9440	39971	40036	62673	62673					0.15433551556270686
PDVLLVDI	8	Unmodified	_PDVLLVDI_					0	0	0		nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2;NIPBL-SPEF2|2|fusion;ENST00000503074.1_1_5:35659153-35697983:+|nuORF	nc|ENSG00000152582|Q9C093-2|SPEF2	nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.226318359375	2	442.260394	882.506234	-0.35811	-0.00015838	-2.5387	-0.0011228	-2.8968	-0.0012812	442.2591019392722	29.504	0.79674	29.507	29.24	30.036	0.0031357					35	19	2	0	0	0	0.027866	1	1846	1846		52.299	13.493	1	491990			57201	6283	39972	40037	62674	62674					0.06028150808708688
PDVNLVTQQ	9	Unmodified	_PDVNLVTQQ_					0	0	0		ENST00000570306.5_1_17:19284999-19286541:+|nuORF;nc|ENSG00000166484|Q13164-2|MAPK7;ENSG00000166484|ENST00000395604|MAPK7	ENST00000570306.5_1_17:19284999-19286541:+|nuORF	ENST00000570306.5_1_17:19284999-19286541:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.33135986328125	2	507.266739	1012.51892	-1.1711	-0.00059406	-2.1354	-0.0010832	-3.3065	-0.0016773	507.26513778970394	37.704	0.30949	37.704	37.559	37.869	0					12	8	2	0	0	0	0.024447	1	3090	3090		32.812	4.9302	1	81188			57202	7571	39973	40038	62675	62675					0.013165622009523759
PDVPTLDNPV	10	Unmodified	_PDVPTLDNPV_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7509765625	2	533.774396	1065.53424	-0.63072	-0.00033666	0.27464	0.00014659	-0.35609	-0.00019007	533.7746249839985	40.056	0.52522	39.906	39.553	40.078	-0.1497					20	13	2	0	0	0	0.03519	1	3425	3425		30.318	0	1	761060	+		57203	24640	39974	40039	62676	62676					0.004094289981367183
PDVPTLDNPV	10	Unmodified	_PDVPTLDNPV_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.774396	1065.53424	-0.26748	-0.00014277	-6.3534	-0.0033913	-6.6209	-0.003534	533.7709576292423	39.534	0.7319	39.534	39.183	39.915	0	-0.11733	-0.0017882	NaN	42.864	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509440	+		57204	24640	39974	40039							0.004094289981367183
PDVPTLDNPV	10	Unmodified	_PDVPTLDNPV_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.774396	1065.53424	-1.389	-0.00074139	-4.9662	-0.0026508	-6.3551	-0.0033922	533.7715834759906	39.626	0.90283	39.515	39.115	40.017	-0.11117	-0.13689	-0.00030725	NaN	42.864	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453870	+		57205	24640	39974	40039							0.004094289981367183
PDVVKVQQT	9	Unmodified	_PDVVKVQQT_					0	0	0			REV__sp|P03107|VL2_HPV16MinorcapsidproteinL2OS=Humanpapillomavirustype16OX=333760GN=L2PE=1SV=1	REV__sp|P03107|VL2_HPV16MinorcapsidproteinL2OS=Humanpapillomavirustype16OX=333760GN=L2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.33148193359375	2	507.284931	1012.55531	0.086588	4.3925E-05	-0.74771	-0.0003793	-0.66112	-0.00033538	507.284272362936	37.424	0.70113	37.424	36.966	37.667	0					38	18	3	0	0	0	0.024405	1	3078	3078		35.618	7.736	1	839350	+		57206	37522	39975	40040	62677	62677					0.04953439097675982
PDWFLLLL	8	Unmodified	_PDWFLLLL_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3260192871094	2	508.794404	1015.57425	0.28579	0.00014541	-0.65224	-0.00033186	-0.36645	-0.00018645	508.7940138714916	77.749	0.53959	77.538	77.29	77.83	-0.21087					20	12	2	0	0	0	0.027866	1	9615	9615		52.299	0	1	246230			57207	18258	39976	40041	62678	62678					0.06709020459391013
PDWKSSLI	8	Unmodified	_PDWKSSLI_					0	0	0		ENSG00000126262|ENST00000599180|FFAR2	ENSG00000126262|ENST00000599180|FFAR2	ENSG00000126262|ENST00000599180|FFAR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.28692626953125	2	473.255643	944.496732	0.76085	0.00036008	-0.31957	-0.00015124	0.44129	0.00020884	473.2554622711241	93.831	0.73775	93.831	93.429	94.167	0					29	17	2	0	0	0	0.027866	1	11954	11954		17.365	0	1	130240			57208	4193	39977	40042	62679	62679					0.022263825232016643
PDWNRGQCC	9	Unmodified	_PDWNRGQCC_					0	0	0			REV__ENSG00000136631|ENST00000644510|VPS45	REV__ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7925415039062	2	539.713293	1077.41203	-0.65659	-0.00035437	-3.6376	-0.0019632	-4.2942	-0.0023176	539.71140054769	78.136	0.19976	78.136	78.042	78.242	0					6	4	2	0	0	0	0.024541	1	9680	9680		9.7057	0	1	49464	+		57209	23669	39978	40043	62680	62680					-0.12357634556701669
PDWPSLGDI	9	Unmodified	_PDWPSLGDI_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.6048278808594	2	500.242732	998.470912	-0.41267	-0.00020643	0.49513	0.00024768	0.082463	4.1252E-05	500.24274720807125	56.283	0.59685	56.126	55.856	56.453	-0.15655					31	14	3	0	0	0	0.024323	1	6089	6089		44.117	3.5442	1	357680	+		57210	23814	39979	40044	62681	62681					-0.028385117190850906
PDWVSLNL	8	Unmodified	_PDWVSLNL_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.294677734375	2	472.247818	942.481082	-1.0977	-0.00051838	3.3429	0.0015787	2.2453	0.0010603	472.24662357443464	34.285	0.34774	34.11	33.82	34.168	-0.17557					14	8	3	0	0	0	0.027866	1	2499	2499		18.324	0	1	53593	+		57211	28959	39980	40045	62682	62682					0.007540960061305668
PDYIILQEL	9	Unmodified	_PDYIILQEL_					0	0	0		PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.8177490234375	2	552.30279	1102.59103	0.035634	1.9681E-05	-2.237	-0.0012355	-2.2014	-0.0012158	552.3012373268667	41.078	0.63173	41.078	40.8	41.432	0					30	17	3	0	0	0	0.024457	1	3725	3725		37.159	16.212	1	182310			57212	18990	39981	40046	62683	62683					0.043834765546762355
PDYIILQEL	9	Unmodified	_PDYIILQEL_					0	0	0		PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.30279	1102.59103	-0.056217	-3.1049E-05	0.76635	0.00042326	0.71013	0.00039221	552.8062899481996	41.21	0.45857	41.086	40.87	41.328	-0.12317	-0.051247	0.0025433	NaN	29.15	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246380			57213	18990	39981	40046							0.043834765546762355
PDYIILQEL	9	Unmodified	_PDYIILQEL_					0	0	0		PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	PPTC7|p.M233I|1|0.12|ENSG00000196850|chr12:110539849-110539849|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	552.30279	1102.59103	-0.20625	-0.00011391	-1.369	-0.00075611	-1.5753	-0.00087002	552.3011852970171	41.226	0.45823	41.249	41.04	41.498	0.023006	0.1111	0.0001846	NaN	29.15	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207680			57214	18990	39981	40046							0.043834765546762355
PDYWLSLL	8	Unmodified	_PDYWLSLL_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2;nc|ENSG00000173083|Q9Y251-2|HPSE;ENSG00000173083|ENST00000311412|HPSE	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7509460449219	2	503.765843	1005.51713	-0.65308	-0.000329	-0.002633	-1.3264E-06	-0.65571	-0.00033033	503.76569355697023	34.889	3.1117	34.889	33.894	37.005	0					157	82	3	0	0	0	0.027866	1	2496	2496		60.294	14.342	1	729500			57215	8332	39982	40047	62684	62684					0.014595531830082109
PEAALLLLL	9	Unmodified	_PEAALLLLL_					0	0	0			REV__nc|ENSG00000140474|Q6PHR2-3|ULK3	REV__nc|ENSG00000140474|Q6PHR2-3|ULK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.8072204589844	2	476.807511	951.600469	0.69297	0.00033041	-0.37679	-0.00017965	0.31619	0.00015076	476.8071060785484	102.56	0.55478	102.43	102.15	102.71	-0.12931					28	12	3	0	0	0	0.67308	1	12737	12737		47.916	0	1	438550	+		57216	24022	39983	40048	62685	62685					0.12273289630866202
PEAALSAQV	9	Unmodified	_PEAALSAQV_					0	0	0		nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2718505859375	2	443.23745	884.460347	0.11099	4.9196E-05	-0.68129	-0.00030197	-0.5703	-0.00025278	443.2373029751057	46.257	0.70664	46.257	45.953	46.659	0					32	19	3	0	0	0	0.024405	1	4604	4604		27.882	0	1	280750			57217	18580	39984	40049	62686	62686					0.013495056264787308
PEAASGLLSLF	11	Unmodified	_PEAASGLLSLF_					0	0	0			REV__TTC14|p.R32L|1|0.11|ENSG00000163728|chr3:180602356-180602356|G/T|missense_variant	REV__TTC14|p.R32L|1|0.11|ENSG00000163728|chr3:180602356-180602356|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7822875976562	2	552.800414	1103.58628	-0.3081	-0.00017032	-1.024	-0.00056604	-1.3321	-0.00073636	553.3011090627865	83.087	0.42942	82.948	82.739	83.168	-0.13861					11	9	2	0	0	0	0.024747	1	10015	10015		24.519	0	1	47268	+		57218	37739	39985	40050	62687	62687					0.03862592411928745
PEADESVLWQL	11	Unmodified	_PEADESVLWQL_					0	0	0		nc|ENSG00000196361|Q14576-2|ELAVL3;ENSG00000196361|ENST00000359227|ELAVL3	nc|ENSG00000196361|Q14576-2|ELAVL3	nc|ENSG00000196361|Q14576-2|ELAVL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.26605224609375	3	429.546954	1285.61903	0.60925	0.0002617	-3.9926	-0.001715	-3.3833	-0.0014533	429.54453363875666	20.981	0.28832	20.804	20.678	20.967	-0.17721					8	5	2	0	0	0	0.024727	1	606	606		36.318	5.2495	1	8678.2			57219	9857	39986	40051	62688	62688					-0.012352452558843652
PEAELSVSSV	10	Unmodified	_PEAELSVSSV_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.26104736328125	2	509.258579	1016.50261	3.264	0.0016622	1.4841	0.00075581	4.7481	0.002418	509.2591839759491	17.09	0.30419	17.09	16.946	17.25	0					12	6	3	0	0	0	1.1267	1	128	128		29.15	0	1	37689			57220	4218	39987	40052	62689	62689					-0.004985637557979317
PEAKRIRL	8	Unmodified	_PEAKRIRL_					0	0	0		DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant;nc|ENSG00000141994|Q96G46-2|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589854.1_1_19:5790042-5791152:-|nuORF	DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.8128967285156	2	491.811451	981.608348	-0.10352	-5.0914E-05	3.3319	0.0016387	3.2284	0.0015878	491.81270729613976	101.98	1.135	101.98	101.6	102.73	0					54	25	3	0	0	0	1.0009	1	13076	13076		37.159	1.9584	1	321380			57221	676	39988	40053	62690	62690					0.11680861670970444
PEAKVKPQKVK	11	Unmodified	_PEAKVKPQKVK_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	417.9225158691406	3	417.930962	1250.77106	0.28303	0.00011829	3.732	0.0015597	4.0151	0.001678	417.93334274069935	104.43	0.25812	104.42	104.3	104.55	-0.0032196					9	5	2	0	0	0	0.024809	1	13325	13325		8.4073	0	1	19817	+		57222	20254	39989	40054	62691	62691					0.15570200282309088
PEALEMNL	8	Unmodified	_PEALEMNL_					0	0	0		ENST00000574048.2_1_17:1057467-1057677:-|nuORF;ENST00000571306.1_1_17:1057467-1057878:-|nuORF	ENST00000574048.2_1_17:1057467-1057677:-|nuORF	ENST00000574048.2_1_17:1057467-1057677:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2688903808594	2	458.725861	915.437169	0.039798	1.8257E-05	-0.03301	-1.5143E-05	0.0067885	3.114E-06	458.72567959015873	48.65	1.6218	48.65	48.072	49.694	0					61	45	2	0	0	0	0.027866	1	4912	4912		35.618	5.1146	1	172420			57223	17035	39990	40055	62692	62692					-0.02393256482491779
PEALHDSL	8	Unmodified	_PEALHDSL_					0	0	0		ENST00000489758.1_1_1:25124261-25124318:+|nuORF	ENST00000489758.1_1_1:25124261-25124318:+|nuORF	ENST00000489758.1_1_1:25124261-25124318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.787841796875	2	441.2218	880.429047	0.22253	9.8186E-05	-2.4194	-0.0010675	-2.1969	-0.00096932	441.2204695647818	42.836	0.39793	42.696	42.558	42.956	-0.13929					21	10	3	0	0	0	0.027866	1	3941	3941		29.15	3.6994	1	238360			57224	15418	39991	40056	62693	62693					-0.01595067407629358
PEAMRQCVARI	11	Unmodified	_PEAMRQCVARI_					0	0	0			REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.2388916015625	3	425.221642	1272.6431	-0.10574	-4.4964E-05	2.5773	0.0010959	2.4716	0.001051	425.222251065733	21.985	0.71658	21.794	21.468	22.184	-0.19072					46	14	5	0	0	0	0.024746	1	733	733		21.032	0	1	200060	+		57225	36839	39992	40057	62694	62694					0.017679934251191298
PEAPKLVLQSL	11	Unmodified	_PEAPKLVLQSL_					0	0	0		nc|ENSG00000162852|Q6PJW8-3|CNST;ENST00000483271.1_1_1:246729833-246797398:+|nuORF;nc|ENSG00000162852|Q6PJW8-2|CNST;ENSG00000162852|ENST00000366513|CNST	nc|ENSG00000162852|Q6PJW8-3|CNST	nc|ENSG00000162852|Q6PJW8-3|CNST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.3585815429688	2	597.858264	1193.70197	-0.54175	-0.00032389	-2.3717	-0.0014179	-2.9135	-0.0017418	597.8567189287833	95.585	1.2856	95.433	95.098	96.384	-0.15186					62	29	3	0	0	0	1.0183	1	11770	11770		32.751	2.4328	1	353870			57226	7000	39993	40058	62695	62695					0.11287116262769814
PEAPVYIN	8	Unmodified	_PEAPVYIN_					0	0	0			REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.78118896484375	2	451.734543	901.454533	0.79321	0.00035832	-0.70511	-0.00031852	0.088104	3.98E-05	451.73421038664577	98.28	0.50006	98.278	98.056	98.556	-0.0020828					19	11	2	0	0	0	0.027866	1	12513	12513		33.516	0	1	68720	+		57227	32246	39994	40059	62696	62696					-0.00013592885204616323
PEASGSIFTI	10	Unmodified	_PEASGSIFTI_					0	0	0			REV__ENSG00000175707|ENST00000320567|KDF1	REV__ENSG00000175707|ENST00000320567|KDF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.276611328125	2	511.263665	1020.51278	-0.54114	-0.00027667	1.4752	0.00075419	0.93401	0.00047753	511.2642301678562	73.526	0.62955	73.261	72.977	73.607	-0.26479					20	15	2	0	0	0	0.03519	1	8625	8625		49.442	22.749	1	102510	+		57228	26967	39995	40060	62697	62697					0.003340439694284214
PEASRRTWSP	10	Unmodified	_PEASRRTWSP_					0	0	0			REV__ENST00000568542.5_1_16:2255373-2256424:+|nuORF	REV__ENST00000568542.5_1_16:2255373-2256424:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.801513671875	2	593.801811	1185.58907	-1.1868	-0.00070472	0.72835	0.0004325	-0.45844	-0.00027222	593.8023054283966	35.942	2.4854	35.737	35.428	37.913	-0.20518					202	66	5	0	0	0	0.91678	1	2782	2782		52.937	3.4952	1	98507000	+		57229	35344	39996	40061	62698	62698					0.0036986058942147793
PEATLRAGEL	10	Unmodified	_PEATLRAGEL_					0	0	0		ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA;ENST00000564397.5_1_16:5075481-5078139:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8092041015625	2	528.787838	1055.56112	0.81513	0.00043103	-0.83584	-0.00044198	-0.020714	-1.0953E-05	528.7875594407096	63.83	0.60945	63.83	63.558	64.168	0					29	16	3	0	0	0	0.03519	1	7479	7479		29.17	7.4843	1	938770			57230	2476	39997	40062	62699	62699					0.03556537609347288
PEAVALGLL	9	Unmodified	_PEAVALGLL_					0	0	0			REV__ENST00000587486.6_1_19:13049472-13049670:+|nuORF	REV__ENST00000587486.6_1_19:13049472-13049670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.30218505859375	2	441.768386	881.522219	0.30811	0.00013611	1.17	0.00051686	1.4781	0.00065297	441.7691784590081	63.877	0.50438	63.626	63.408	63.912	-0.25141					24	13	2	0	0	0	0.024325	1	7453	7453		31.955	0	1	106020	+		57231	27247	39998	40063	62700	62700					0.07671857045602337
PEAVALGLL	9	Unmodified	_PEAVALGLL_					0	0	0			REV__ENST00000587486.6_1_19:13049472-13049670:+|nuORF	REV__ENST00000587486.6_1_19:13049472-13049670:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.768386	881.522219	-0.14185	-6.2666E-05	2.425	0.0010713	2.2831	0.0010086	441.76954024353495	63.703	0.65876	63.51	63.38	64.038	-0.19243	-0.057947	0.00039895	NaN	40.573	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69889	+		57232	27247	39998	40063							0.07671857045602337
PEAVRRLT	8	Unmodified	_PEAVRRLT_					0	0	0		ENST00000475696.5_1_2:220110350-220111398:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	ENST00000475696.5_1_2:220110350-220111398:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.7481384277344	2	471.279983	940.545414	0.25154	0.00011855	4.1854	0.0019725	4.4369	0.002091	471.28177179841055	50.451	0.92877	50.171	49.657	50.586	-0.27977					50	24	3	0	0	0	0.027866	1	5059	5059		32.812	11.865	1	1233600			57233	15068	39999	40064	62701	62701					0.0727629588294576
PEAWGLLDD	9	Unmodified	_PEAWGLLDD_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.27911376953125	2	508.24019	1014.46583	-0.73786	-0.00037501	3.5838	0.0018214	2.846	0.0014464	508.2404706398605	48.133	0.30201	47.98	47.891	48.193	-0.15301					14	8	2	0	0	0	0.024427	1	4850	4850		19.997	0	1	129140			57234	1831	40000	40065	62702	62702					-0.0408281558170529
PEAWLQLVSG	10	Unmodified	_PEAWLQLVSG_					0	0	0			REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2694091796875	2	550.292756	1098.57096	-0.55308	-0.00030436	0.62289	0.00034277	0.069814	3.8418E-05	550.2929841720952	65.784	1.0537	65.533	65.067	66.121	-0.25112					51	25	3	0	0	0	0.03519	1	7459	7459		25.574	9.5673	1	679110	+		57235	33577	40001	40066	62703	62703					0.02561725614691568
PECAALKTPPP	11	Unmodified	_PECAALKTPPP_					0	0	0			REV__ENSG00000126705|ENST00000673934|AHDC1	REV__ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.2766723632812	2	562.294442	1122.57433	0.18349	0.00010317	-2.7085	-0.001523	-2.525	-0.0014198	562.293093196877	81.933	0.21239	81.74	81.548	81.76	-0.19334					6	4	2	0	0	0	0.024496	1	9861	9861		61.691	0	1	46029	+		57236	22906	40002	40067	62704	62704					0.017946523970749695
PECLRATRA	9	Unmodified	_PECLRATRA_					0	0	0		ENST00000325643.5_1_9:90499938-90500478:+|nuORF	ENST00000325643.5_1_9:90499938-90500478:+|nuORF	ENST00000325643.5_1_9:90499938-90500478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2417907714844	2	508.768926	1015.5233	1.3529	0.00068834	0.73344	0.00037315	2.0864	0.0010615	508.7697701277342	36.384	0.59674	36.185	35.979	36.576	-0.19829					17	14	2	0	0	0	0.024495	1	2842	2842		26.693	4.9906	1	89920			57237	12273	40003	40068	62705	62705					0.016157481428763276
PECREGLL	8	Unmodified	_PECREGLL_					0	0	0		nc|ENSG00000090686|Q86UV5-8|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-8|USP48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	458.731477	915.448402	-0.31302	-0.00014359	1.0438	0.00047885	0.73083	0.00033525	458.73045191518924	26.615	0.75487	26.592	26.405	27.16	-0.023088					28	18	2	0	0	0	0.027866	1	1367	1367		57.811	0	1	74064			57238	18108	40004	40069	62706	62706					-0.012704343883456204
PECTAMPHSI	10	Oxidation (M)	_PECTAM(Oxidation (M))PHSI_		PECTAM(1)PHSI		PECTAM(57)PHSI	0	0	1		TMEM225|p.R201H|1|0.15|ENSG00000204300|chr11:123883214-123883214|C/T|missense_variant	TMEM225|p.R201H|1|0.15|ENSG00000204300|chr11:123883214-123883214|C/T|missense_variant	TMEM225|p.R201H|1|0.15|ENSG00000204300|chr11:123883214-123883214|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2402954101562	2	551.238809	1100.46307	0.44466	0.00024511	2.5499	0.0014056	2.9945	0.0016507	551.2401594172857	83.185	0.76738	83.094	82.701	83.469	-0.090454					42	17	4	0	0	0	0.85955	1	10360	10360		56.721	19.562	1	855410			57239	38087	40005	40070	62707	62707		993			-0.08314730302527096
PEDDGLEQVLL	11	Unmodified	_PEDDGLEQVLL_					0	0	0		ENST00000529847.1_1_11:6501462-6502550:-|nuORF	ENST00000529847.1_1_11:6501462-6502550:-|nuORF	ENST00000529847.1_1_11:6501462-6502550:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5099182128906	3	409.874959	1226.60305	0.022186	9.0934E-06	-1.5466	-0.00063392	-1.5244	-0.00062483	409.8742668109052	28.139	0.56996	28.135	27.929	28.499	-0.0042					32	13	4	0	0	0	0.02476	1	1645	1645		20.315	0	1	258920			57240	16216	40006	40071	62708	62708					-0.0011895149277734163
PEDKVILAR	9	Unmodified	_PEDKVILAR_					0	0	0		ENST00000507578.1_1_5:177019655-177021165:+|nuORF;ENST00000505521.1_1_5:177019550-177020791:+|nuORF;ENST00000507723.1_1_5:177019275-177020791:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	ENST00000507578.1_1_5:177019655-177021165:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3247680664062	2	520.808574	1039.60259	-1.1163	-0.00058137	1.0362	0.00053968	-0.08006	-4.1696E-05	520.8085355639115	49.613	0.62939	49.687	49.352	49.982	0.074196					21	16	2	0	0	0	0.022832	1	5057	5057		93.195	36.474	1	388650			57241	9371	40007	40072	62709	62709					0.08437718368668357
PEDLKVVKN	9	Unmodified	_PEDLKVVKN_					0	0	0		ENSG00000159110|ENST00000342136|IFNAR2;nc|ENSG00000159110|P48551-3|IFNAR2;nc|ENSG00000159110|P48551-2|IFNAR2	ENSG00000159110|ENST00000342136|IFNAR2	ENSG00000159110|ENST00000342136|IFNAR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.3018798828125	2	521.300581	1040.58661	-1.3241	-0.00069027	1.1536	0.00060139	-0.17049	-8.8878E-05	521.3010355944747	60.673	0.74037	60.673	60.33	61.07	0					52	19	3	0	0	0	0.42604	1	7012	7012		64.207	2.0999	1	6189300			57242	6718	40008	40073	62710	62710					0.06794012131763338
PEDRVPTAD	9	Unmodified	_PEDRVPTAD_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2769775390625	2	500.240721	998.466889	-0.068276	-3.4155E-05	-0.78547	-0.00039292	-0.85374	-0.00042708	500.24084673925825	61.041	0.18121	61.112	61.058	61.239	0.071125					6	4	2	0	0	0	0.024436	1	6986	6986		16.473	0	1	175890	+		57243	22635	40009	40074	62711	62711					-0.032406012128149086
PEDSKYFL	8	Unmodified	_PEDSKYFL_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3135070800781	2	499.745108	997.475663	-0.1748	-8.7355E-05	3.3912	0.0016947	3.2164	0.0016074	499.7466536371899	77.63	1.2089	77.644	77.104	78.313	0.013947					41	28	2	0	0	0	0.027866	1	9462	9462		38.806	14.603	1	66977			57244	10117	40010	40075	62712	62712					-0.023176275763375997
PEDVLHKL	8	Unmodified	_PEDVLHKL_					0	0	0			REV__CON__P02769	REV__CON__P02769	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7876281738281	2	475.768917	949.523281	1.8045	0.00085853	-1.615	-0.00076837	0.18951	9.0162E-05	475.768059240325	59.102	0.85201	59.102	58.823	59.675	0					31	22	2	0	0	0	0.027866	1	6815	6815		40.573	0	1	93866	+	+	57245	19542	40011	40076	62713	62713					0.04650071414505419
PEDVPSAPRA	10	Unmodified	_PEDVPSAPRA_					0	0	0			REV__ENST00000554012.5_1_14:96176426-96176717:-|nuORF	REV__ENST00000554012.5_1_14:96176426-96176717:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3305053710938	2	519.764363	1037.51417	-0.64371	-0.00033458	-3.6092	-0.0018759	-4.2529	-0.0022105	519.7621406465767	69.687	0.60802	69.701	69.426	70.034	0.014427					22	14	2	0	0	0	0.03519	1	8352	8352		60.118	0	1	210790	+		57246	34979	40012	40077	62714	62714					-0.0030832194181584782
PEDVVRVI	8	Unmodified	_PEDVVRVI_					0	0	0		ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF;ENSG00000146192|ENST00000274963|FGD2	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.27984619140625	2	463.768917	925.523281	0.053768	2.4936E-05	0.39929	0.00018518	0.45305	0.00021011	463.76878292247073	40.981	0.8106	40.981	40.516	41.326	0					38	22	3	0	0	0	0.027866	1	3591	3591		24.203	6.8378	1	1071000			57247	5861	40013	40078	62715	62715					0.05754071414526152
PEDWSLPR	8	Unmodified	_PEDWSLPR_					0	0	0			REV__ENST00000491873.5_1_3:180705863-180707489:-|nuORF	REV__ENST00000491873.5_1_3:180705863-180707489:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7901916503906	2	500.248349	998.482145	-1.1693	-0.00058494	-3.5911	-0.0017965	-4.7604	-0.0023814	500.2465612169635	29.456	0.23742	29.456	29.333	29.57	0					9	5	2	0	0	0	0.027866	1	1815	1815		23.042	17.121	1	31925	+		57248	33376	40014	40079	62716	62716					-0.017156896249503006
PEEEAFCVFV	10	Unmodified	_PEEEAFCVFV_					0	0	0		nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L;ENST00000597440.5_1_19:7913809-7917719:+|nuORF;nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5	nc|ENSG00000142459|Q96CN4|EVI5L;nc|ENSG00000067208|O60447|EVI5	nc|ENSG00000142459|Q96CN4|EVI5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2623901367188	2	585.262807	1168.51106	-0.97172	-0.00056871	0.3059	0.00017903	-0.66582	-0.00038968	585.2629390186464	26.291	1.4985	26.055	25.843	27.341	-0.23603					113	38	4	0	0	0	1.0541	1	1363	1363		38.806	5.9937	1	5115100			57249	5561;1356	40015	40080	62717	62717					-0.06645333110850515
PEEEASTSVC	10	Unmodified	_PEEEASTSVC_					0	0	0		ENSG00000204498|ENST00000376148|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1	ENSG00000204498|ENST00000376148|NFKBIL1	ENSG00000204498|ENST00000376148|NFKBIL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3153686523438	2	526.216054	1050.41756	-0.21553	-0.00011342	-2.8483	-0.0014988	-3.0638	-0.0016122	526.214432694123	73.456	0.42982	73.266	73.007	73.436	-0.19026					16	10	2	0	0	0	0.03519	1	8655	8655		21.96	4.5949	1	175120			57250	10349	40016	40081	62718	62718					-0.10563677283926154
PEEEEIGSPE	10	Unmodified	_PEEEEIGSPE_					0	0	0		nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810954-29811370:+|nuORF	nc|ENSG00000079616|Q14807-2|KIF22	nc|ENSG00000079616|Q14807-2|KIF22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2845458984375	2	558.240583	1114.46661	0.33656	0.00018788	0.029914	1.6699E-05	0.36647	0.00020458	558.2403609682741	78.5	1.1927	78.269	77.543	78.736	-0.23141					44	27	2	0	0	0	0.03519	1	9373	9373		49.442	8.6634	1	119820			57251	1670	40017	40082	62719	62719					-0.08604065723329768
PEEEKTDTH	9	Unmodified	_PEEEKTDTH_					0	0	0			REV__TYW1B|p.R238T|1|0.17|ENSG00000277149|chr7:72807076-72807076|C/G|missense_variant	REV__TYW1B|p.R238T|1|0.17|ENSG00000277149|chr7:72807076-72807076|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3189697265625	2	543.240918	1084.46728	-0.80822	-0.00043906	2.4955	0.0013557	1.6873	0.00091661	543.2420834699392	59.529	0.66856	59.615	59.426	60.095	0.085682					38	17	3	0	0	0	0.024405	1	6707	6707		53.351	0	1	516130	+		57252	37746	40018	40083	62720	62720					-0.07157226283607088
PEEFEYQRSY	10	Unmodified	_PEEFEYQRSY_					0	0	0		ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.26171875	3	449.866575	1346.5779	-0.35312	-0.00015886	-2.0367	-0.00091625	-2.3898	-0.0010751	449.865664481952	31.339	0.37361	31.187	30.968	31.342	-0.15231					12	9	2	0	0	0	0.03519	1	2065	2065		11.636	2.4241	1	92417			57253	1031	40019	40084	62721	62721					-0.08153006295378873
PEEFLLQT	8	Unmodified	_PEEFLLQT_					0	0	0		chr2:127388998-127389111|517|15.45|0.0|20.56|+|0|MAP3K2-DT,MAP3K2-DT|1	chr2:127388998-127389111|517|15.45|0.0|20.56|+|0|MAP3K2-DT,MAP3K2-DT|1	chr2:127388998-127389111|517|15.45|0.0|20.56|+|0|MAP3K2-DT,MAP3K2-DT|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7920227050781	2	488.752933	975.491313	0.60314	0.00029479	-0.57754	-0.00028227	0.025599	1.2512E-05	488.75268392171444	77.935	1.4043	77.724	77.376	78.78	-0.21087					55	33	2	0	0	0	0.027866	1	9671	9671		38.806	8.3025	1	879030			57254	370	40020	40085	62722	62722					0.002586589407201245
PEEIEDHVE	9	Unmodified	_PEEIEDHVE_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.2916870117188	2	548.743293	1095.47203	-0.20291	-0.00011135	1.1647	0.00063913	0.9618	0.00052778	548.7437423271588	72.704	0.81708	72.714	72.29	73.107	0.0096512					49	19	4	0	0	0	0.024205	1	8750	8750		44.117	0	1	509620			57255	653	40021	40086	62723	62723					-0.0718834214085291
PEEIQRLAAE	10	Unmodified	_PEEIQRLAAE_					0	0	0		nc|ENSG00000152670|Q9NQI0-3|DDX4;nc|ENSG00000152670|Q9NQI0-2|DDX4;nc|ENSG00000152670|Q9NQI0-4|DDX4;ENSG00000152670|ENST00000505374|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.2980346679688	2	578.303852	1154.59315	0.41277	0.00023871	-2.2481	-0.0013001	-1.8353	-0.0010614	578.3033452135207	99.515	0.88882	99.39	98.828	99.717	-0.12458					29	23	2	0	0	0	1.0816	1	12325	12325		35.152	2.4015	1	81595			57256	6291	40022	40087	62724	62724					0.022039052924583302
PEEKIVGTK	9	Unmodified	_PEEKIVGTK_					0	0	0			REV__nc|ENSG00000147133|P21675-17|TAF1	REV__nc|ENSG00000147133|P21675-17|TAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27117919921875	2	500.787307	999.560061	-0.41172	-0.00020619	-2.1392	-0.0010713	-2.5509	-0.0012775	500.78587950296344	22.171	0.52088	22.095	21.89	22.411	-0.075296					13	10	2	0	0	0	0.024374	1	749	749		25.574	12.762	1	33461	+		57257	36762	40023	40088	62725	62725					0.06026323240428155
PEELELDEL	9	Unmodified	_PEELELDEL_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.7621459960938	2	543.763694	1085.51284	-1.3138	-0.00071438	-0.77362	-0.00042067	-2.0874	-0.001135	543.7630002857842	84.047	1.4454	84.074	83.427	84.872	0.026558					103	33	5	0	0	0	0.25032	1	10453	10453		82.305	5.4584	1	1544300			57258	5598	40024	40089	62726	62726					-0.026500008212224202
PEELELDEL	9	Unmodified	_PEELELDEL_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.7620239257812	2	543.763694	1085.51284	-1.5083	-0.00082013	-0.8612	-0.00046829	-2.3695	-0.0012884	543.7629447383438	85.9	2.3961	85.923	84.869	87.265	0.023666					104	56	3	0	0	0	0.22754	1	10717	10717		85.359	0	1	559840			57259	5598	40024	40089	62727	62727					-0.026500008212224202
PEELSLALE	9	Unmodified	_PEELSLALE_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7865295410156	2	500.763497	999.512442	-0.2015	-0.0001009	-1.9057	-0.00095429	-2.1072	-0.0010552	500.7642148961815	54.923	0.49109	54.773	54.474	54.965	-0.15036					33	13	4	0	0	0	0.024323	1	6016	6016		53.351	0	1	296370	+		57260	28494	40025	40090	62728	62728					0.012666242495697588
PEELTAFVY	9	Unmodified	_PEELTAFVY_					0	0	0			REV__ENST00000519308.1_1_9:5114002-5114779:+|nuORF	REV__ENST00000519308.1_1_9:5114002-5114779:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.3259887695312	2	534.76604	1067.51753	-0.049872	-2.667E-05	0.97991	0.00052402	0.93004	0.00049735	534.7668896180854	78.382	1.7715	78.151	77.586	79.357	-0.23141					79	41	4	0	0	0	0.024436	1	9294	9294		38.806	0	1	983820	+		57261	34256	40026	40091	62729	62729					-0.013530718877973413
PEENLSLAVI	10	Unmodified	_PEENLSLAVI_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693-6|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.796630859375	2	542.797872	1083.58119	0.017495	9.496E-06	-0.39301	-0.00021332	-0.37551	-0.00020383	542.7975197223367	105.7	0.89027	105.7	105.36	106.25	0					65	31	3	0	0	0	0.91051	1	13554	13554		53.351	10.955	1	191290			57262	4784	40027	40092	62730	62730					0.04274288549299854
PEENLSLAVI	10	Unmodified	_PEENLSLAVI_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693-6|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.797872	1083.58119	-0.54304	-0.00029476	0.045334	2.4607E-05	-0.49771	-0.00027015	542.7978144306323	105.77	1.2737	105.77	105.37	106.65	-0.0013199	-0.16837	8.7866E-06	NaN	53.351	75	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196580			57263	4784	40027	40092							0.04274288549299854
PEENLSLAVI	10	Unmodified	_PEENLSLAVI_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693-6|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.797872	1083.58119	-0.63727	-0.00034591	0.42552	0.00023097	-0.21175	-0.00011494	542.7979492467617	105.8	0.90752	105.8	105.49	106.4	0.00014496	-0.13371	0.00042152	NaN	53.351	59	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231390			57264	4784	40027	40092							0.04274288549299854
PEENLSLAVI	10	Unmodified	_PEENLSLAVI_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693-6|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.797872	1083.58119	-0.29528	-0.00016028	-0.18168	-9.8618E-05	-0.47696	-0.00025889	542.7975870448468	106.19	1.146	106.07	105.77	106.91	-0.1238	0.13184	-0.00023766	NaN	53.351	71	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164000			57265	4784	40027	40092							0.04274288549299854
PEENLSLAVI	10	Unmodified	_PEENLSLAVI_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693-6|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.797872	1083.58119	-1.2841	-0.00069702	0.80069	0.00043461	-0.48343	-0.00026241	542.7981334380452	106.28	0.50113	106.15	105.89	106.4	-0.1328	0.21094	0.0008288	NaN	53.351	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103190			57266	4784	40027	40092							0.04274288549299854
PEENLSLAVI	10	Unmodified	_PEENLSLAVI_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;nc|ENSG00000134324|Q14693-6|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.797872	1083.58119	-0.17825	-9.6753E-05	0.015712	8.5283E-06	-0.16254	-8.8224E-05	542.7977211575558	106.3	0.79666	106.14	105.9	106.69	-0.16133	0.20043	-2.3372E-05	NaN	53.351	56	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163250			57267	4784	40027	40092							0.04274288549299854
PEEPFPLL	8	Unmodified	_PEEPFPLL_					0	0	0		nc|ENSG00000123575|Q6PEV8-2|FAM199X;ENSG00000123575|ENST00000493442|FAM199X;FAM199X|p.D385Qfs*7|1|0.07|ENSG00000123575|chrX:104189762-104189763|-/TCAAATCCTTC|frameshift_variant	nc|ENSG00000123575|Q6PEV8-2|FAM199X	nc|ENSG00000123575|Q6PEV8-2|FAM199X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7899475097656	2	471.252569	940.490584	-0.33986	-0.00016016	-3.6038	-0.0016983	-3.9436	-0.0018584	471.2508532996518	47.522	0.34383	47.581	47.457	47.8	0.059093					17	10	2	0	0	0	0.027866	1	4741	4741		13.775	0	1	552190			57268	3987	40028	40093	62731	62731					0.017958642916710232
PEEPHQQI	8	Unmodified	_PEEPHQQI_					0	0	0			REV__nc|ENSG00000153485|Q8N6I4-2|LYSET	REV__nc|ENSG00000153485|Q8N6I4-2|LYSET	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.7640686035156	2	489.237981	976.461409	-0.513	-0.00025098	-1.5789	-0.00077245	-2.0919	-0.0010234	489.23773396918824	43.279	0.51049	43.053	42.833	43.344	-0.22597					26	13	3	0	0	0	0.027866	1	3935	3935		26.796	3.7594	1	237430	+		57269	24905	40029	40094	62732	62732					-0.027762800046275515
PEEPLLHTE	9	Unmodified	_PEEPLLHTE_					0	0	0			REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.343017578125	2	532.766571	1063.51859	-0.67653	-0.00036043	1.0838	0.00057743	0.40731	0.000217	532.7666780004998	66.027	0.4828	65.776	65.561	66.044	-0.25112					19	11	2	0	0	0	0.024487	1	7543	7543		31.955	8.9124	1	229080	+		57270	31359	40030	40095	62733	62733					-0.010628575189002731
PEEPLLHTE	9	Unmodified	_PEEPLLHTE_					0	0	0			REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.766571	1063.51859	-0.17511	-9.3294E-05	0.25788	0.00013739	0.082772	4.4098E-05	532.7665973035448	65.585	0.73366	65.585	65.292	66.026	0	-0.11731	-0.00027053	NaN	24.203	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042300	+		57271	31359	40030	40095							-0.010628575189002731
PEEPLLHTE	9	Unmodified	_PEEPLLHTE_					0	0	0			REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.766571	1063.51859	-0.39998	-0.0002131	0.46607	0.00024831	0.066087	3.5209E-05	532.7666878125299	65.921	0.66496	65.648	65.362	66.027	-0.27282	-0.054349	-4.8697E-05	NaN	24.203	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002700	+		57272	31359	40030	40095							-0.010628575189002731
PEEPLLHTE	9	Unmodified	_PEEPLLHTE_					0	0	0			REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.766571	1063.51859	-0.33106	-0.00017638	0.49979	0.00026627	0.16873	8.9896E-05	532.7667163399636	65.633	0.69636	65.671	65.355	66.051	0.037376	-0.031727	-1.2767E-05	NaN	24.203	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905540	+		57273	31359	40030	40095							-0.010628575189002731
PEEPLLHTE	9	Unmodified	_PEEPLLHTE_					0	0	0			REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	REV__ENST00000376561.7_1_11:70281793-70282567:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.766571	1063.51859	-0.37372	-0.00019911	1.1715	0.00062415	0.79781	0.00042505	532.7667744909131	65.976	0.56573	65.735	65.542	66.108	-0.24145	0.032443	0.000703	NaN	24.203	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300710	+		57274	31359	40030	40095							-0.010628575189002731
PEEPPLAII	9	Unmodified	_PEEPPLAII_					0	0	0			REV__nc|ENSG00000196092|Q02548-4|PAX5	REV__nc|ENSG00000196092|Q02548-4|PAX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.28668212890625	2	489.778951	977.543348	-0.064746	-3.1711E-05	3.403	0.0016667	3.3383	0.001635	489.78073951737093	93.124	1.1042	93.124	92.454	93.558	0					54	25	4	0	0	0	0.024487	1	11742	11742		31.955	14.59	1	162280	+		57275	37046	40031	40096	62734	62734					0.05367822354457985
PEEPPLAII	9	Unmodified	_PEEPPLAII_					0	0	0			REV__nc|ENSG00000196092|Q02548-4|PAX5	REV__nc|ENSG00000196092|Q02548-4|PAX5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	489.778951	977.543348	-0.44315	-0.00021704	4.2196	0.0020667	3.7764	0.0018496	489.7810364975302	93.044	0.59207	93.04	92.776	93.368	-0.0042038	-0.040023	0.00025059	NaN	31.955	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101350	+		57276	37046	40031	40096							0.05367822354457985
PEEPPLAII	9	Unmodified	_PEEPPLAII_					0	0	0			REV__nc|ENSG00000196092|Q02548-4|PAX5	REV__nc|ENSG00000196092|Q02548-4|PAX5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.778951	977.543348	-0.43386	-0.0002125	4.1123	0.0020141	3.6784	0.0018016	489.78081755265214	93.068	0.80466	93.076	92.801	93.606	0.0077286	-0.0042675	0.00014553	NaN	31.955	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185010	+		57277	37046	40031	40096							0.05367822354457985
PEEPPVAAQV	10	Unmodified	_PEEPPVAAQV_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3;ENST00000544446.1_1_17:43206606-43209831:-|nuORF	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.8004150390625	2	518.769114	1035.52368	0.39399	0.00020439	-0.3302	-0.0001713	0.063789	3.3092E-05	518.7684958137155	63.376	0.52102	63.118	62.792	63.313	-0.25824					20	12	2	0	0	0	0.03519	1	7150	7150		30.318	0	1	165790			57278	6891	40032	40097	62735	62735					0.007334463437018712
PEEPRWPL	8	Unmodified	_PEEPRWPL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.8036193847656	2	512.266542	1022.51853	-0.71343	-0.00036546	-3.4243	-0.0017541	-4.1377	-0.0021196	512.2646384829546	34.782	0.79122	34.782	34.444	35.235	0					42	17	4	0	0	0	0.027866	1	2691	2691		24.203	0	1	809950	+		57279	25256	40033	40098	62736	62736					0.00817187271752573
PEEPSGMWTV	10	Unmodified	_PEEPSGMWTV_					0	0	0		JMY|p.R502Qfs*27|1|0.06|ENSG00000152409|chr5:79291277-79291278|GG/-|frameshift_variant;JMY|p.H904Ifs*2|1|0.23|ENSG00000152409|chr5:79316046-79316046|T/-|frameshift_variant;nc|ENSG00000152409|Q8N9B5-2|JMY;ENSG00000152409|ENST00000396137|JMY	JMY|p.R502Qfs*27|1|0.06|ENSG00000152409|chr5:79291277-79291278|GG/-|frameshift_variant	JMY|p.R502Qfs*27|1|0.06|ENSG00000152409|chr5:79291277-79291278|GG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.754150390625	2	566.752607	1131.49066	0.22604	0.00012811	3.1605	0.0017912	3.3865	0.0019193	566.7542263813289	50.535	0.66591	50.354	50.094	50.76	-0.18071					43	17	3	0	0	0	0.57825	1	5155	5155		79.451	17.344	1	3759800			57280	6271	40034	40099	62737	62737					-0.0698250377063232
PEEQLLFLYI	10	Unmodified	_PEEQLLFLYI_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R;GLP1R|p.L359Cfs*12|1|0.3|ENSG00000112164|chr6:39079591-39079591|C/-|frameshift_variant	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	633.369140625	2	632.844822	1263.67509	0.6284	0.00039768	-1.0374	-0.0006565	-0.40898	-0.00025882	632.8439212012876	98.647	0.2488	98.523	98.463	98.711	-0.12413					8	5	2	0	0	0	0.03519	1	12247	12247		19.104	2.6304	1	22189			57281	3178	40035	40100	62738	62738					0.0538000765156994
PEEQSWIHDKV	11	Unmodified	_PEEQSWIHDKV_					0	0	0			REV__ENST00000479283.1_1_10:12160790-12162287:+|nuORF	REV__ENST00000479283.1_1_10:12160790-12162287:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.26983642578125	3	456.557853	1366.65173	-0.034795	-1.5886E-05	-2.6094	-0.0011913	-2.6442	-0.0012072	456.55666976910703	27.619	0.39031	27.377	27.163	27.553	-0.24217					14	8	2	0	0	0	0.024735	1	1559	1559		16.53	0	1	65832	+		57282	27389	40036	40101	62739	62739					-0.016930381330894306
PEESFRFRQA	10	Unmodified	_PEESFRFRQA_					0	0	0			REV__ENST00000586200.1_1_17:74723092-74729407:+|nuORF	REV__ENST00000586200.1_1_17:74723092-74729407:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2582702636719	3	422.879038	1265.61528	-0.45586	-0.00019277	3.6694	0.0015517	3.2135	0.0013589	422.8803247469534	27.276	0.33068	27.263	27.17	27.5	-0.012983					18	8	3	0	0	0	0.03519	1	1450	1450		19.263	0	1	233060	+		57283	35592	40037	40102	62740	62740					-0.006898702391026745
PEESRLRA	8	Unmodified	_PEESRLRA_					0	0	0			REV__SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|18|2|sense	REV__SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|18|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.8001403808594	2	479.259248	956.503943	0.39306	0.00018838	-0.81481	-0.00039051	-0.42175	-0.00020213	479.2586846270051	26.634	0.96216	26.634	26.324	27.286	0					53	23	4	0	0	0	0.027866	1	1440	1440		71.296	0	1	736100	+		57284	37647	40038	40103	62741	62741					0.023951151236246915
PEESWLECV	9	Unmodified	_PEESWLECV_					0	0	0			REV__ENST00000509190.1_3_5:95768679-95768757:-|nuORF	REV__ENST00000509190.1_3_5:95768679-95768757:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2756958007812	2	546.239332	1090.46411	-0.40016	-0.00021858	-1.8489	-0.00101	-2.2491	-0.0012285	546.2374460259634	73.57	0.43027	73.293	73.051	73.482	-0.2769					23	10	3	0	0	0	0.023817	1	8627	8627		60.972	5.4677	1	213420	+		57285	34081	40039	40104	62742	62742					-0.07750192662001609
PEEVVALDL	9	Unmodified	_PEEVVALDL_					0	0	0			REV__nc|ENSG00000259706|Q58FF3|HSP90B2P	REV__nc|ENSG00000259706|Q58FF3|HSP90B2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7662048339844	2	492.76604	983.517527	0.15833	7.8017E-05	1.2262	0.00060421	1.3845	0.00068223	492.7666794738476	77.772	2.7036	77.772	77.04	79.744	0					162	64	4	0	0	0	0.43973	1	9609	9609		63.306	2.3343	1	4530600	+		57286	37183	40040	40105	62743	62743					0.02510928112201327
PEEYILAAI	9	Unmodified	_PEEYILAAI_					0	0	0		TMBIM4|p.V211I|1|0.31|ENSG00000155957|chr12:66138046-66138046|C/T|missense_variant	TMBIM4|p.V211I|1|0.31|ENSG00000155957|chr12:66138046-66138046|C/T|missense_variant	TMBIM4|p.V211I|1|0.31|ENSG00000155957|chr12:66138046-66138046|C/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-2	2	509.7770690917969	2	509.776408	1017.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.799	1	82.689	82.189	83.189	-0.11006								0	0	0	0.48029	1	10308	10308		55.504	4.1688	1				57287	38080	40041	40106	62744	62744					0.030195184918625273
PEEYSVPLF	9	Unmodified	_PEEYSVPLF_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7640991210938	2	540.76604	1079.51753	-0.5647	-0.00030537	-2.5412	-0.0013742	-3.1059	-0.0016796	540.7645142367262	49.686	1.4253	49.686	49.249	50.675	0					129	40	5	0	0	0	0.75282	1	5157	5157		42.474	0.078325	1	5786300			57288	8696	40042	40107	62745	62745					-0.01905071887813392
PEEYSVPLF	9	Unmodified	_PEEYSVPLF_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7635498046875	2	540.76604	1079.51753	-1.3957	-0.00075474	-1.6344	-0.00088382	-3.0301	-0.0016386	540.7649982622062	49.627	1.5688	49.701	49.169	50.737	0.074196					106	44	4	0	0	0	0.64155	1	5075	5075		50.025	2.3672	1	5911500			57289	8696	40042	40107	62746	62746					-0.01905071887813392
PEFGRLAR	8	Unmodified	_PEFGRLAR_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.78704833984375	2	473.266876	944.519199	-0.34711	-0.00016427	-1.1543	-0.0005463	-1.5014	-0.00071057	473.2662798344631	83.679	0.56303	83.706	83.469	84.032	0.026558					21	12	2	0	0	0	0.027866	1	10385	10385		37.159	0	1	303270			57290	10140	40043	40108	62747	62747					0.044720267114598755
PEFKLEGA	8	Unmodified	_PEFKLEGA_					0	0	0			REV__nc|ENSG00000070081|P80303-2|NUCB2	REV__nc|ENSG00000070081|P80303-2|NUCB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.26873779296875	2	445.734543	889.454533	-0.59819	-0.00026663	4.0202	0.0017919	3.422	0.0015253	445.73595061203827	63.068	0.49537	63.068	62.769	63.265	0					18	12	2	0	0	0	0.027866	1	7347	7347		23.042	12.177	1	93230	+		57291	20417	40044	40109	62748	62748					0.005384071148114344
PEFLILLT	8	Unmodified	_PEFLILLT_					0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2720642089844	2	473.286411	944.55827	-0.085247	-4.0346E-05	-0.87634	-0.00041476	-0.96159	-0.00045511	473.286149022852	47.991	0.36884	48.058	47.97	48.339	0.066795					18	9	3	0	0	0	0.027866	1	4836	4836		19.36	0	1	127540	+		57292	20455	40045	40110	62749	62749					0.08377314222468613
PEFRFQTN	8	Unmodified	_PEFRFQTN_					0	0	0		ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8206787109375	2	519.753798	1037.49304	-0.92074	-0.00047856	2.9352	0.0015256	2.0145	0.001047	519.7536757473089	80.712	0.40352	80.712	80.457	80.861	0					23	9	3	0	0	0	0.027866	1	10005	10005		23.042	0	1	193860			57293	6627	40046	40111	62750	62750					-0.02420287250652109
PEFYVEPKE	9	Unmodified	_PEFYVEPKE_					0	0	0			REV__LIG4|p.I549F|1|0.71|ENSG00000174405|chr13:108209624-108209624|T/A|missense_variant	REV__LIG4|p.I549F|1|0.71|ENSG00000174405|chr13:108209624-108209624|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.8001098632812	2	569.276772	1136.53899	-2.2502	-0.001281	0.065075	3.7046E-05	-2.1851	-0.0012439	569.276243385864	49.287	0.261	49.361	49.279	49.54	0.074196					9	6	2	0	0	0	0.024477	1	5040	5040		27.882	0	1	160150	+		57294	36310	40047	40112	62751	62751					-0.023816868590984086
PEGFHRSQL	9	Unmodified	_PEGFHRSQL_					0	0	0			REV__SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|37|1|anti-sense	REV__SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|37|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7733154296875	2	535.772522	1069.53049	-0.62204	-0.00033327	1.2785	0.00068497	0.65643	0.0003517	535.7732451828175	41.63	2.2218	41.498	41.215	43.437	-0.1322					121	62	4	0	0	0	0.5973	1	3728	3728		52.937	0	1	16717000			57295	37618	40048	40113	62752	62752					-0.0014919598504548048
PEGGCCWN	8	Unmodified	_PEGGCCWN_					0	0	0		nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF;nc|ENSG00000132600|Q9NVM4-2|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.25537109375	2	433.152006	864.289458	0.51228	0.0002219	-3.7608	-0.001629	-3.2485	-0.0014071	433.15114452896665	103.04	0.15547	102.91	102.83	102.98	-0.12724					5	3	2	0	0	0	0.027866	1	12813	12813		8.2313	0	1	49943			57296	4625	40049	40114	62753	62753					-0.1481147128814655
PEGGGDNNDSQ	11	Unmodified	_PEGGGDNNDSQ_					0	0	0		nc|ENSG00000135870|Q5TC82-2|RC3H1;ENSG00000135870|ENST00000367696|RC3H1;ENST00000479099.2_1_1:173907861-173910545:-|nuORF	nc|ENSG00000135870|Q5TC82-2|RC3H1	nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.281982421875	2	545.207606	1088.40066	0.30576	0.0001667	3.9815	0.0021708	4.2873	0.0023375	545.2104956850029	50.953	0.29852	50.841	50.675	50.973	-0.11163					11	7	3	0	0	0	0.024741	1	5218	5218		37.812	12.361	1	176780			57297	4944	40050	40115	62754	62754					-0.1400046184551229
PEGGRDVE	8	Unmodified	_PEGGRDVE_					0	0	0		ENST00000374280.3_1_1:26362527-26362713:+|nuORF	ENST00000374280.3_1_1:26362527-26362713:+|nuORF	ENST00000374280.3_1_1:26362527-26362713:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7380065917969	2	429.701232	857.38791	-1.0214	-0.00043888	-1.6054	-0.00068985	-2.6268	-0.0011287	429.7006942826294	39.8	0.29883	39.687	39.568	39.867	-0.11222					9	7	2	0	0	0	0.027866	1	3422	3422		11.511	0	1	68260			57298	13108	40051	40116	62755	62755					-0.04648828447091091
PEGLSRLKK	9	Unmodified	_PEGLSRLKK_					0	0	0		ENST00000520316.5_1_8:28627126-28633440:-|nuORF	ENST00000520316.5_1_8:28627126-28633440:-|nuORF	ENST00000520316.5_1_8:28627126-28633440:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2944946289062	2	514.316566	1026.61858	-0.20816	-0.00010706	0.41636	0.00021414	0.2082	0.00010708	514.3153864136101	53.946	0.53355	53.749	53.422	53.955	-0.19739					26	16	2	0	0	0	0.024523	1	5650	5650		10.265	0	1	180390			57299	15975	40052	40117	62756	62756					0.10633424605566688
PEGNIHTILD	10	Unmodified	_PEGNIHTILD_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8301391601562	2	554.785296	1107.55604	-0.17468	-9.6907E-05	3.2268	0.0017902	3.0521	0.0016933	554.7869004669135	87.354	0.5009	87.175	86.862	87.363	-0.17875					14	11	2	0	0	0	0.03519	1	10611	10611		37.812	18.708	1	68852	+		57300	20396	40053	40118	62757	62757					0.006562337467130419
PEGPAGLIGPP	11	Unmodified	_PEGPAGLIGPP_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.3092346191406	2	502.7742	1003.53385	-0.37123	-0.00018664	1.5021	0.00075521	1.1308	0.00056856	502.7746065041765	65.351	0.54597	65.351	65.02	65.566	0					24	15	2	0	0	0	0.024759	1	7704	7704		26.693	2.1737	1	324540			57301	10315	40054	40119	62758	62758					0.03222054068953639
PEGQHLLQG	9	Unmodified	_PEGQHLLQG_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145058131-145058521:-|nuORF	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7821350097656	2	489.753798	977.493044	0.52242	0.00025586	-2.6719	-0.0013086	-2.1495	-0.0010527	489.7519832859155	40.497	0.42101	40.384	40.208	40.629	-0.11222					13	11	2	0	0	0	0.024319	1	3530	3530		66.429	20.477	1	90912			57302	8829	40055	40120	62759	62759					0.003397127493371954
PEGQIILAKWL	11	Unmodified	_PEGQIILAKWL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.3761596679688	2	634.374081	1266.73361	0.33158	0.00021035	4.0302	0.0025566	4.3617	0.002767	634.3765834826517	111.29	0.20173	111.15	111.11	111.31	-0.1469					13	7	2	0	0	0	1.0238	2	13580	13580;13586		31.53	4.8369	1	2032500			57303	9339	40056	40121	62760;62761	62760					0.11091109016706469
PEGQIILAKWL	11	Unmodified	_PEGQIILAKWL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	634.374081	1266.73361	-1.6425	-0.001042	6.2757	0.0039811	4.6332	0.0029392	634.3780219291895	111.26	0.28102	111.12	110.88	111.16	-0.14127	-0.012799	0.0011631	NaN	31.53	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2157000			57304	9339	40056	40121							0.11091109016706469
PEGQNWHSFS	10	Unmodified	_PEGQNWHSFS_					0	0	0			REV__ENSG00000182566|ENST00000328853|CLEC4G	REV__ENSG00000182566|ENST00000328853|CLEC4G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8019409179688	2	594.757069	1187.49959	-0.71813	-0.00042711	-0.42067	-0.0002502	-1.1388	-0.00067731	594.7565375707057	35.989	0.29892	35.772	35.614	35.913	-0.21661					9	6	2	0	0	0	0.03519	1	2781	2781		39.253	2.0937	1	212370	+		57305	27489	40057	40122	62762	62762					-0.08666394089959795
PEGRRKQRRL	10	Unmodified	_PEGRRKQRRL_					0	0	0		nc|ENSG00000112038|P35372-16|OPRM1	nc|ENSG00000112038|P35372-16|OPRM1	nc|ENSG00000112038|P35372-16|OPRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	648.3922729492188	2	648.391993	1294.76943	-0.12697	-8.2326E-05	2.204	0.001429	2.077	0.0013467	648.3939088012331	105.59	1.1539	105.42	105.27	106.42	-0.16216					77	47	4	0	0	0	1.0508	1	13129	13129		39.253	6.4404	1	1122300			57306	18174	40058	40123	62763	62763					0.13384004036925035
PEGSLTYWV	9	Unmodified	_PEGSLTYWV_					0	0	0		ENSG00000229549|ENST00000287721|TSPY8	ENSG00000229549|ENST00000287721|TSPY8	ENSG00000229549|ENST00000287721|TSPY8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7999877929688	2	526.258382	1050.50221	-0.14847	-7.8136E-05	0.27156	0.00014291	0.12309	6.4775E-05	526.2584286222528	106.04	0.36344	105.92	105.67	106.03	-0.1238					19	12	2	0	0	0	0.024487	1	13171	13171		31.955	8.9124	1	53239			57307	10682	40059	40124	62764	62764					-0.021019386850184674
PEGSLTYWV	9	Unmodified	_PEGSLTYWV_					0	0	0		ENSG00000229549|ENST00000287721|TSPY8	ENSG00000229549|ENST00000287721|TSPY8	ENSG00000229549|ENST00000287721|TSPY8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.258382	1050.50221	0.56871	0.00029929	-0.99489	-0.00052357	-0.42617	-0.00022428	526.2577531816092	106.09	0.228	105.93	105.82	106.05	-0.16132	0.0072933	-0.0007296	NaN	31.955	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51442			57308	10682	40059	40124							-0.021019386850184674
PEGSRLFPP	9	Unmodified	_PEGSRLFPP_					0	0	0		LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|39|1|anti-sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|39|1|anti-sense	LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|39|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3008117675781	2	500.266542	998.51853	-0.30748	-0.00015382	-4.1129	-0.0020576	-4.4204	-0.0022114	500.26435396019184	31.998	0.82201	32.061	31.681	32.503	0.063541					36	20	3	0	0	0	0.024021	1	2196	2196		40.778	0	1	779620			57309	17937	40060	40125	62765	62765					0.01921187271773306
PEGSRRKGI	9	Unmodified	_PEGSRRKGI_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2716979980469	2	500.28834	998.562127	-0.56276	-0.00028154	-2.0859	-0.0010436	-2.6487	-0.0013251	500.2873728818924	21.542	0.72077	21.614	21.401	22.122	0.071487					23	14	2	0	0	0	0.024337	1	679	679		67.494	18.283	1	21005			57310	6612	40061	40126	62766	62766					0.06278796768901884
PEGSRRKGI	9	Unmodified	_PEGSRRKGI_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	500.28834	998.562127	-0.49208	-0.00024618	-1.3608	-0.00068078	-1.8529	-0.00092696	500.2872993430163	21.783	0.6182	21.783	21.441	22.06	0	0.092952	-0.001079	NaN	67.494	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15132			57311	6612	40061	40126							0.06278796768901884
PEGVLRSR	8	Unmodified	_PEGVLRSR_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167;REV__nc|nan|Q5SNV9-2|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.29071044921875	2	457.264333	912.514114	0.40225	0.00018394	1.0279	0.00047004	1.4302	0.00065398	457.2647967502845	94.172	1.2911	94.172	93.888	95.179	0					70	30	4	0	0	0	0.027866	1	12082	12082		31.955	12.595	1	1875700	+		57312	37259;28817	40062	40127	62767	62767					0.05435722848869773
PEGWYLPSYL	10	Unmodified	_PEGWYLPSYL_					0	0	0		ENSG00000101276|ENST00000645534|SLC52A3;nc|ENSG00000101276|Q9NQ40-2|SLC52A3;SLC52A3|p.T96Mfs*53|1|0.16|ENSG00000101276|chr20:765488-765489|-/GAGACTGACA|frameshift_variant	ENSG00000101276|ENST00000645534|SLC52A3	ENSG00000101276|ENST00000645534|SLC52A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.2300720214844	3	408.869368	1223.58628	0.30771	0.00012581	3.0578	0.0012502	3.3655	0.0013761	408.8707001888132	25.153	0.37418	25.153	24.874	25.248	0					22	8	3	0	0	0	0.03519	1	1129	1129		6.6596	0	1	67669			57313	2303	40063	40128	62768	62768					-0.016574075880726014
PEGYPLHSE	9	Unmodified	_PEGYPLHSE_					0	0	0		ENST00000360351.8_2_2:210595311-210595557:+|nuORF	ENST00000360351.8_2_2:210595311-210595557:+|nuORF	ENST00000360351.8_2_2:210595311-210595557:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7902221679688	2	514.737814	1027.46108	-0.17519	-9.0175E-05	3.2423	0.0016689	3.0671	0.0015788	514.7394428946882	54.841	1.8176	54.841	54.109	55.927	0					88	51	2	0	0	0	0.024457	1	6110	6110		21.96	0	1	296750			57314	12764	40064	40129	62769	62769					-0.051556997244460945
PEGYQDREIML	11	Unmodified	_PEGYQDREIML_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MSMS	OPSCC_40_ClassI_Rep-3	6	450.77349853515625	3	450.88346	1349.62855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.21	1	111.06	110.56	111.56	-0.1469								0	0	0	1.5425	1	13574	13574		13.508	3.404	1				57315	3772	40065	40130	62770	62770					-0.032278002420298435
PEHFTYEPN	9	Unmodified	_PEHFTYEPN_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.2901000976562	2	567.248546	1132.48254	0.30792	0.00017467	1.6886	0.00095788	1.9966	0.0011325	567.2493867406555	58.741	0.69538	58.554	58.275	58.971	-0.18705					41	18	3	0	0	0	0.024436	1	6680	6680		30.504	2.4222	1	1470600			57316	2601	40066	40131	62771	62771					-0.07840314695749839
PEHPKKEN	8	Unmodified	_PEHPKKEN_					0	0	0		TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.7777099609375	2	489.753798	977.493044	1.3705	0.00067121	-1.4871	-0.00072833	-0.11663	-5.7118E-05	489.7529313164969	51.451	0.72445	51.267	50.981	51.705	-0.18405					39	18	3	0	0	0	0.027866	1	5257	5257		44.117	24.757	1	1440100			57317	5884	40067	40132	62772	62772					0.0033971274932582674
PEHYLLVR	8	Unmodified	_PEHYLLVR_					0	0	0			REV__ENST00000587460.5_1_19:1358605-1376572:+|nuORF	REV__ENST00000587460.5_1_19:1358605-1376572:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3085327148438	2	513.790184	1025.56581	-1.1535	-0.00059266	1.4031	0.00072089	0.24958	0.00012823	513.7910340162917	46.313	0.25449	46.161	45.989	46.244	-0.15156					9	6	2	0	0	0	0.027866	1	4547	4547		19.36	0	1	64913	+		57318	35627	40068	40133	62773	62773					0.05405466542742943
PEIEICYDR	9	Unmodified	_PEIEICYDR_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2681884765625	2	569.265881	1136.51721	-0.027526	-1.5669E-05	3.1908	0.0018164	3.1633	0.0018008	569.2676179559305	24.453	1.5092	24.238	23.733	25.243	-0.2151					90	34	4	0	0	0	0.59099	1	1049	1049		53.351	7.3792	1	2498100			57319	18521	40069	40134	62774	62774					-0.045588148793285654
PEIFLHQSD	9	Unmodified	_PEIFLHQSD_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3251342773438	2	543.266739	1084.51892	-1.1038	-0.00059966	3.8583	0.0020961	2.7545	0.0014964	543.268716227996	45.471	0.60563	45.322	45.044	45.649	-0.1488					31	17	3	0	0	0	0.024344	1	4425	4425		23.523	10.069	1	724020	+		57320	20698	40070	40135	62775	62775					-0.019954377990416106
PEIHRRID	8	Unmodified	_PEIHRRID_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF;ENST00000534269.5_1_6:136590404-136595119:-|nuORF;ENST00000466743.1_1_1:36755336-36759695:+|nuORF;ENST00000411753.1_1_3:31495879-31496380:+|nuORF;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF;ENSG00000054118|ENST00000354618|THRAP3	nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000054118|ENST00000354618|THRAP3	nc|ENSG00000029363|Q9NYF8-2|BCLAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2925415039062	2	518.28834	1034.56213	0.058668	3.0407E-05	-3.7274	-0.0019319	-3.6688	-0.0019015	518.2867325207723	55.019	0.29024	54.788	54.601	54.891	-0.23087					18	7	3	0	0	0	0.027866	1	5863	5863		21.96	0	1	470670			57321	1005;8398;1167	40071	40136	62776	62776					0.04622796768899207
PEIIKRVM	8	Unmodified	_PEIIKRVM_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.329345703125	2	493.296788	984.579022	-0.594	-0.00029302	-2.7868	-0.0013747	-3.3808	-0.0016678	493.2942140337298	24.736	0.67495	24.52	24.089	24.764	-0.2151					29	15	3	0	0	0	0.027866	1	1100	1100		31.955	11.473	1	128410	+		57322	20367	40072	40137	62777	62777					0.08611581330490026
PEIIPLYL	8	Unmodified	_PEIIPLYL_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.771240234375	2	479.286411	956.55827	-0.47935	-0.00022974	-3.6555	-0.001752	-4.1348	-0.0019818	479.2845924437101	74.165	1.1012	74.175	73.793	74.895	0.0096512					32	25	2	0	0	0	0.027866	1	9071	9071		42.474	15.678	1	122670			57323	5014	40073	40138	62778	62778					0.07825314222475299
PEILEWGDP	9	Unmodified	_PEILEWGDP_					0	0	0			REV__ENST00000473447.1_1_7:99008715-99008814:+|nuORF	REV__ENST00000473447.1_1_7:99008715-99008814:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2644653320312	2	528.25584	1054.49713	-0.77758	-0.00041076	-1.6045	-0.00084761	-2.3821	-0.0012584	528.2554051261855	48.692	0.35149	48.539	48.295	48.646	-0.15277					15	9	2	0	0	0	0.024436	1	4943	4943		38.806	10.924	1	120870	+		57324	21601	40074	40139	62779	62779					-0.027942425476112476
PEILPKLLL	9	Unmodified	_PEILPKLLL_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.2626342773438	2	518.344261	1034.67397	0.11153	5.7811E-05	2.3484	0.0012173	2.46	0.0012751	518.345429782292	57.803	0.79216	57.628	56.931	57.723	-0.1749					35	20	2	0	0	0	0.024541	1	6484	6484		17.365	5.8539	1	763980			57325	3892	40075	40140	62780	62780					0.15801838073343788
PEINPWLLL	9	Unmodified	_PEINPWLLL_					0	0	0		ENST00000316881.8_1_17:54966994-54967120:-|nuORF	ENST00000316881.8_1_17:54966994-54967120:-|nuORF	ENST00000316881.8_1_17:54966994-54967120:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	547.8134765625	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.839	1	56.674	56.174	57.174	-0.16431								0	0	0	0.17581	1	6327	6327		76.774	1.7308	1				57326	12152	40076	40141	62781	62781					0.07411790516812289
PEIPAPNPPCT	11	Unmodified	_PEIPAPNPPCT_					0	0	0		ENST00000266458.9_1_12:10365411-10365633:+|nuORF	ENST00000266458.9_1_12:10365411-10365633:+|nuORF	ENST00000266458.9_1_12:10365411-10365633:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.328857421875	2	568.276249	1134.53795	-1.3158	-0.00074774	-2.532	-0.0014389	-3.8478	-0.0021866	568.2745068816112	92.012	0.48237	92.012	91.772	92.255	0					25	11	3	0	0	0	0.024736	1	11674	11674		22.58	0	1	195360			57327	11607	40077	40142	62782	62782					-0.02394224499653319
PEIVQFLLE	9	Unmodified	_PEIVQFLLE_					0	0	0		ENST00000508889.1_1_5:102895742-102898461:-|nuORF;ENSG00000112874|ENST00000230792|NUDT12	ENST00000508889.1_1_5:102895742-102898461:-|nuORF	ENST00000508889.1_1_5:102895742-102898461:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8320922851562	2	544.305332	1086.59611	-0.079966	-4.3526E-05	1.6132	0.00087806	1.5332	0.00083453	544.3059959495023	71.688	0.62064	71.413	70.967	71.588	-0.27509					32	14	3	0	0	0	0.024405	1	8351	8351		44.117	14.967	1	903200			57328	3247	40078	40143	62783	62783					0.05627780417307804
PEIVQFLLQ	9	Unmodified	_PEIVQFLLQ_					0	0	0		NUDT12|p.E67Q|1|0.29|ENSG00000112874|chr5:103560050-103560050|C/G|missense_variant	NUDT12|p.E67Q|1|0.29|ENSG00000112874|chr5:103560050-103560050|C/G|missense_variant	NUDT12|p.E67Q|1|0.29|ENSG00000112874|chr5:103560050-103560050|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8320922851562	2	543.813325	1085.6121	-0.090166	-4.9033E-05	-1.6351	-0.00088921	-1.7253	-0.00093824	543.8131503022943	71.798	0.60019	71.523	71.188	71.788	-0.2751					19	14	2	0	0	0	0.024405	1	8351	8351		44.117	17.321	1	525250			57329	18894	40079	40144	62784	62784					0.07271486654212822
PEKCKMKIY	9	Unmodified	_PEKCKMKIY_					0	0	0			REV__ENST00000355897.9_1_3:169755804-169797620:+|nuORF	REV__ENST00000355897.9_1_3:169755804-169797620:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.3031616210938	2	570.301213	1138.58787	0.043408	2.4756E-05	2.8596	0.0016308	2.903	0.0016556	570.3027282595444	99.263	1.6227	99.095	98.24	99.863	-0.16862					123	39	5	0	0	0	0.55828	1	12263	12263		55.504	2.1528	1	1337000	+		57330	30783	40080	40145	62785	62785					0.02412186904666669
PEKILRSTF	9	Unmodified	_PEKILRSTF_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2752075195312	2	545.816399	1089.61824	0.024682	1.3472E-05	-0.57989	-0.00031651	-0.5552	-0.00030304	545.8156826315085	77.905	0.90717	77.694	77.29	78.198	-0.21087					32	21	2	0	0	0	0.022657	1	9597	9597		77.318	5.4401	1	223690			57331	6011	40081	40146	62786	62786					0.07702004885709357
PEKIQVQLC	9	Unmodified	_PEKIQVQLC_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;ENST00000574985.1_1_16:2986529-2998725:+|nuORF	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7662353515625	2	529.289159	1056.56377	-1.6235	-0.00085931	-1.578	-0.00083522	-3.2015	-0.0016945	529.2881289038074	65.523	0.78187	65.31	64.888	65.67	-0.21327					38	18	4	0	0	0	0.024523	1	7532	7532		21.96	0	1	690180			57332	1220	40082	40147	62787	62787					0.037746697426428
PEKIRHKS	8	Unmodified	_PEKIRHKS_					0	0	0		nc|ENSG00000100926|O15321-2|TM9SF1;ENSG00000100926|ENST00000261789|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7693176269531	2	497.793258	993.571963	-0.4133	-0.00020574	-2.1073	-0.001049	-2.5206	-0.0012548	497.7926011160863	25.13	0.2094	25.13	24.964	25.173	0					7	4	2	0	0	0	0.027866	1	1157	1157		10.866	0	1	22791			57333	18129	40083	40148	62788	62788					0.07491984774276261
PEKKSVWV	8	Unmodified	_PEKKSVWV_					0	0	0			REV__ENST00000465552.1_1_3:41277978-41278230:+|nuORF	REV__ENST00000465552.1_1_3:41277978-41278230:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2918395996094	2	486.779285	971.544017	0.41964	0.00020427	2.7226	0.0013253	3.1422	0.0015296	486.7805254709829	60.126	0.14529	59.929	59.874	60.02	-0.19742					6	3	2	0	0	0	0.027866	1	6683	6683		27.882	0	1	68151	+		57334	33009	40084	40149	62789	62789					0.057106617941940385
PEKKTNCET	9	Unmodified	_PEKKTNCET_					0	0	0		ENSG00000164929|ENST00000309982|BAALC;nc|ENSG00000164929|Q8WXS3-3|BAALC;nc|ENSG00000164929|Q8WXS3-1|BAALC;ENST00000519507.5_1_8:104165483-104240324:+|nuORF	ENSG00000164929|ENST00000309982|BAALC	ENSG00000164929|ENST00000309982|BAALC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3058471679688	2	525.250231	1048.48591	-0.015796	-8.2967E-06	4.4335	0.0023287	4.4177	0.0023204	525.7558854098369	71.525	0.62064	71.25	70.967	71.588	-0.27509					24	14	2	0	0	0	0.024344	1	8357	8357		37.812	0	1	176220			57335	7342	40085	40150	62790	62790					-0.0363938791340388
PEKLQGLAPE	10	Unmodified	_PEKLQGLAPE_					0	0	0			REV__ENST00000485470.1_1_1:150129349-150129586:+|nuORF	REV__ENST00000485470.1_1_1:150129349-150129586:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2928466796875	2	541.298039	1080.58152	-0.26162	-0.00014162	-1.752	-0.00094833	-2.0136	-0.0010899	541.2961418931818	39.511	0.95625	39.511	39.219	40.176	0					42	26	2	0	0	0	0.03519	1	3389	3389		52.937	6.9847	1	577700	+		57336	33561	40086	40151	62791	62791					0.04445708269122406
PEKLSAARMW	10	Unmodified	_PEKLSAARMW_					0	0	0			REV__ENSG00000100092|ENST00000649765|SH3BP1	REV__ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	594.8109130859375	2	594.813333	1187.61211	0.35507	0.0002112	-3.9192	-0.0023312	-3.5641	-0.00212	594.8108874702573	18.819	1.0305	18.819	18.48	19.511	0					50	20	4	0	0	0	1.1266	1	327	327		29.17	2.1227	1	207530	+		57337	21047	40087	40152	62792	62792					0.025811633825242097
PEKMEAEDYVM	11	Unmodified	_PEKMEAEDYVM_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.8773498535156	3	447.861556	1340.56284	-0.47932	-0.00021467	-2.1536	-0.00096453	-2.6329	-0.0011792	447.86041727062934	64.583	0.19497	64.327	64.191	64.386	-0.25562					7	4	2	0	0	0	0.024723	1	7321	7321		12.433	0	1	33252			57338	4541	40088	40153	62793	62793					-0.09381957479263292
PEKMHVLL	8	Oxidation (M)	_PEKM(Oxidation (M))HVLL_		PEKM(1)HVLL		PEKM(120)HVLL	0	0	1		OVCH2|p.E350K|1|0.16|ENSG00000183378|chr11:7696558-7696558|C/T|missense_variant	OVCH2|p.E350K|1|0.16|ENSG00000183378|chr11:7696558-7696558|C/T|missense_variant	OVCH2|p.E350K|1|0.16|ENSG00000183378|chr11:7696558-7696558|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.3135986328125	2	491.773145	981.531738	-0.3518	-0.00017301	4.2276	0.002079	3.8758	0.001906	491.7750611543085	28.858	0.51747	28.689	28.467	28.985	-0.16897					22	11	3	0	0	0	0.027866	1	1725	1725		119.56	39.618	1	93079			57339	18935	40089	40154	62794	62794		597			0.04023302059499656
PEKMHVLL	8	Oxidation (M)	_PEKM(Oxidation (M))HVLL_		PEKM(1)HVLL		PEKM(110)HVLL	0	0	1		OVCH2|p.E350K|1|0.16|ENSG00000183378|chr11:7696558-7696558|C/T|missense_variant	OVCH2|p.E350K|1|0.16|ENSG00000183378|chr11:7696558-7696558|C/T|missense_variant	OVCH2|p.E350K|1|0.16|ENSG00000183378|chr11:7696558-7696558|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.3135986328125	2	491.773145	981.531738	-0.26805	-0.00013182	3.7499	0.0018441	3.4819	0.0017123	491.7749833107319	28.856	0.46964	28.707	28.487	28.956	-0.14952					16	10	2	0	0	0	0.027866	1	1704	1704		106.42	32.16	1	138450			57340	18935	40089	40154	62795	62795		597			0.04023302059499656
PEKNSMQV	8	Unmodified	_PEKNSMQV_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.27197265625	2	466.728935	931.443317	0.31449	0.00014678	-4.1507	-0.0019373	-3.8362	-0.0017905	466.72677874590255	36.361	0.38724	36.144	35.981	36.368	-0.21661					15	9	2	0	0	0	0.027866	1	2845	2845		10.265	0	1	433780	+		57341	20551	40090	40155	62796	62796					-0.025147382509771887
PEKPPPAEPK	10	Unmodified	_PEKPPPAEPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.32080078125	2	545.300581	1088.58661	-0.2372	-0.00012935	2.7851	0.0015187	2.5479	0.0013894	545.3018582584946	72.635	0.56707	72.645	72.21	72.777	0.0097733					25	13	3	0	0	0	0.03519	1	8777	8777		126.24	41.082	1	325880	+		57342	25017	40091	40156	62797	62797					0.0458601213174461
PEKPQVEIL	9	Unmodified	_PEKPQVEIL_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8021240234375	2	526.802957	1051.59136	0.42741	0.00022516	-0.77063	-0.00040597	-0.34322	-0.00018081	526.802395744007	76.326	0.84262	76.338	76.015	76.857	0.011642					60	20	4	0	0	0	0.50848	1	9349	9349		58.782	2.0609	1	2897200			57343	9362	40092	40157	62798	62798					0.06762896274517516
PEKQSSNLF	9	Unmodified	_PEKQSSNLF_					0	0	0			REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2672729492188	2	525.266739	1048.51892	0.48551	0.00025502	0.3292	0.00017292	0.81471	0.00042794	525.2663346084731	83.672	1.4056	83.503	82.948	84.353	-0.16915					82	32	5	0	0	0	0.31247	1	10121	10121		73.975	2.679	1	1012100	+		57344	20337	40093	40158	62799	62799					-0.00339437799038933
PEKRRKLME	9	Unmodified	_PEKRRKLME_					0	0	0		ENST00000433031.1_1_7:57215791-57215998:-|nuORF	ENST00000433031.1_1_7:57215791-57215998:-|nuORF	ENST00000433031.1_1_7:57215791-57215998:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.801513671875	2	593.839882	1185.66521	-1.2313	-0.00073118	-0.10137	-6.0196E-05	-1.3326	-0.00079138	593.8398367522936	36.016	0.13383	35.811	35.718	35.852	-0.20518					6	3	2	0	0	0	0.02435	1	2782	2782		42.396	15.703	1	220820			57345	14213	40094	40159	62800	62800					0.07980541165215982
PEKRTLSQ	8	Unmodified	_PEKRTLSQ_					0	0	0		ENST00000497194.6_1_11:71710857-71711031:+|nuORF	ENST00000497194.6_1_11:71710857-71711031:+|nuORF	ENST00000497194.6_1_11:71710857-71711031:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29766845703125	2	479.769448	957.524344	2.07	0.00099313	0.60361	0.00028959	2.6736	0.0012827	479.7690816350064	19.27	0.44614	19.037	18.829	19.275	-0.23345					10	8	2	0	0	0	0.027866	1	375	375		58.782	0	1	18514			57346	15584	40095	40160	62801	62801					0.04388285783431911
PEKSSIKSM	9	Unmodified	_PEKSSIKSM_					0	0	0			REV__ENST00000405223.6_1_2:43871812-43968195:+|nuORF	REV__ENST00000405223.6_1_2:43871812-43968195:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.76373291015625	2	503.765517	1005.51648	-0.019119	-9.6314E-06	-3.7589	-0.0018936	-3.778	-0.0019032	503.7635574334774	35.033	1.5652	34.817	34.006	35.571	-0.21556					111	39	5	0	0	0	0.67687	1	2620	2620		47.657	1.7054	1	19901000	+		57347	24850	40096	40161	62802	62802					0.013943904716484212
PEKVLSLVD	9	Unmodified	_PEKVLSLVD_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2769775390625	2	500.289682	998.564812	0.33679	0.00016849	0.71192	0.00035616	1.0487	0.00052466	500.2896149092018	61.131	0.41949	61.203	61.131	61.551	0.071125					17	10	2	0	0	0	0.024436	1	6986	6986		23.042	0	1	258800			57348	3537	40097	40162	62803	62803					0.06547207383198383
PEKWKRSTRVL	11	Unmodified	_PEKWKRSTRVL_					0	0	0			REV__ENST00000564629.1_1_16:31469100-31469376:-|nuORF	REV__ENST00000564629.1_1_16:31469100-31469376:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.6082763671875	3	467.277132	1398.80957	1.0494	0.00049037	-2.0658	-0.0009653	-1.0164	-0.00047493	467.2761491351017	99.952	0.75739	99.947	99.254	100.01	-0.0050888					30	17	2	0	0	0	0.024746	1	12695	12695		49.466	14.288	1	291120	+		57349	35253	40098	40163	62804	62804					0.12611505916834176
PEKWKRSTRVL	11	Unmodified	_PEKWKRSTRVL_					0	0	0			REV__ENST00000564629.1_1_16:31469100-31469376:-|nuORF	REV__ENST00000564629.1_1_16:31469100-31469376:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	467.277132	1398.80957	0.90307	0.00042198	-2.1843	-0.0010207	-1.2812	-0.00059868	467.27603945648247	99.927	0.62952	99.802	99.233	99.863	-0.12504	-0.19093	-0.00044593	NaN	49.466	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312560	+		57350	35253	40098	40163							0.12611505916834176
PELAELSGL	9	Unmodified	_PELAELSGL_					0	0	0			REV__ENSG00000069535|ENST00000378069|MAOB	REV__ENSG00000069535|ENST00000378069|MAOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.76495361328125	2	464.752933	927.491313	-0.28529	-0.00013259	2.0595	0.00095715	1.7742	0.00082456	464.7541748590994	33.588	0.81151	33.595	33.498	34.309	0.0066261					45	20	3	0	0	0	0.024323	1	2427	2427		27.882	3.6795	1	968340	+		57351	20403	40099	40164	62805	62805					0.024666589407161155
PELAELSGL	9	Unmodified	_PELAELSGL_					0	0	0			REV__ENSG00000069535|ENST00000378069|MAOB	REV__ENSG00000069535|ENST00000378069|MAOB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.752933	927.491313	-0.34736	-0.00016144	0.72543	0.00033715	0.37807	0.00017571	464.7530697908767	33.713	0.22987	33.513	33.325	33.555	-0.20019	-0.13391	-0.0013876	NaN	27.882	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52116	+		57352	20403	40099	40164							0.024666589407161155
PELAKGRTYV	10	Unmodified	_PELAKGRTYV_					0	0	0		ENST00000511345.5_1_4:845337-845877:-|nuORF;ENST00000515868.5_1_4:845337-862348:-|nuORF	ENST00000511345.5_1_4:845337-845877:-|nuORF	ENST00000511345.5_1_4:845337-845877:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.7551879882812	2	567.319306	1132.62406	0.65779	0.00037318	-1.0807	-0.00061311	-0.42293	-0.00023994	567.3185770256873	50.954	1.2741	50.843	50.379	51.653	-0.11163					60	33	3	0	0	0	0.03519	1	5137	5137		35.152	6.0025	1	996070			57353	15836	40100	40165	62806	62806					0.06305103397380662
PELAKGRTYV	10	Unmodified	_PELAKGRTYV_					0	0	0		ENST00000511345.5_1_4:845337-845877:-|nuORF;ENST00000515868.5_1_4:845337-862348:-|nuORF	ENST00000511345.5_1_4:845337-845877:-|nuORF	ENST00000511345.5_1_4:845337-845877:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.319306	1132.62406	-0.34116	-0.00019354	0.40896	0.00023201	0.067802	3.8465E-05	567.3188075398497	51.099	0.47722	51.099	50.845	51.323	0	0.15425	0.0012316	NaN	41.427	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180880			57354	15836	40100	40165							0.06305103397380662
PELAKGRTYV	10	Unmodified	_PELAKGRTYV_					0	0	0		ENST00000511345.5_1_4:845337-845877:-|nuORF;ENST00000515868.5_1_4:845337-862348:-|nuORF	ENST00000511345.5_1_4:845337-845877:-|nuORF	ENST00000511345.5_1_4:845337-845877:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.319306	1132.62406	0.090156	5.1147E-05	-0.50675	-0.00028749	-0.41659	-0.00023634	567.3188990473486	51.255	0.80105	50.979	50.552	51.353	-0.27643	0.033468	0.00019263	NaN	41.427	62	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	842150			57355	15836	40100	40165							0.06305103397380662
PELARRVLS	9	Unmodified	_PELARRVLS_					0	0	0			REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7666015625	2	520.81419	1039.61383	-0.46869	-0.0002441	0.78256	0.00040757	0.31387	0.00016347	520.8139610978133	47.617	0.14198	47.52	47.451	47.593	-0.097553					5	3	2	0	0	0	0.024323	1	4684	4684		53.351	0	1	30583	+		57356	33851	40101	40166	62807	62807					0.09560540462803147
PELCAPPPLP	10	Unmodified	_PELCAPPPLP_					0	0	0		ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.8272094726562	2	517.272978	1032.5314	-0.4146	-0.00021446	4.4243	0.0022886	4.0097	0.0020741	517.2751449083462	35.217	0.85069	35.031	34.601	35.452	-0.18675					39	21	3	0	0	0	0.03519	1	2604	2604		35.618	0	1	177370			57357	9636	40102	40167	62808	62808					0.016438823396356383
PELDCHPVC	9	Unmodified	_PELDCHPVC_					0	0	0			REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7518005371094	2	506.71497	1011.41539	-0.18083	-9.163E-05	-2.7602	-0.0013986	-2.941	-0.0014903	506.7134827523107	67.809	0.32467	67.57	67.422	67.747	-0.23814					11	7	2	0	0	0	0.024535	1	7793	7793		25.45	7.1258	1	102650	+		57358	29292	40103	40168	62809	62809					-0.08986384502725286
PELDCHPVC	9	Unmodified	_PELDCHPVC_					0	0	0			REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.71497	1011.41539	-0.0083448	-4.2284E-06	-2.391	-0.0012116	-2.3994	-0.0012158	506.71379822136026	67.89	0.32722	67.657	67.429	67.756	-0.23376	0.043112	0.00010593	NaN	25.45	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102290	+		57359	29292	40103	40168							-0.08986384502725286
PELFSIHFN	9	Unmodified	_PELFSIHFN_					0	0	0		CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.8056640625	2	552.279649	1102.54475	0.048102	2.6566E-05	-4.0373	-0.0022297	-3.9892	-0.0022031	552.2772614298906	70.996	0.78329	70.724	70.493	71.276	-0.27185					34	17	3	0	0	0	0.024457	1	8346	8346		29.15	8.2026	1	846840		+	57360	544;10183	40104	40169	62810	62810					-0.0024254355676021078
PELFSIHFN	9	Unmodified	_PELFSIHFN_					0	0	0		CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.279649	1102.54475	0.4557	0.00025167	-4.5893	-0.0025346	-4.1336	-0.0022829	552.2769212319761	70.927	0.65157	70.712	70.435	71.086	-0.21425	-0.0003809	-0.00061899	NaN	35.618	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107400		+	57361	544;10183	40104	40169							-0.0024254355676021078
PELGAAPPEL	10	Unmodified	_PELGAAPPEL_					0	0	0			REV__ENST00000515004.5_3_4:1173253-1188902:-|nuORF	REV__ENST00000515004.5_3_4:1173253-1188902:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7926940917969	2	497.266207	992.517862	0.60686	0.00030177	-1.0392	-0.00051676	-0.43233	-0.00021498	497.26549106705363	71.714	0.91734	71.425	70.844	71.761	-0.28858					40	23	2	0	0	0	0.03519	1	8633	8633		32.812	11.11	1	252070	+		57362	34185	40105	40170	62811	62811					0.02130347832053303
PELGPLPAL	9	Unmodified	_PELGPLPAL_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.7690734863281	2	453.768386	905.522219	1.1877	0.00053895	-0.92908	-0.00042159	0.25863	0.00011736	453.76776381525127	70.898	0.96956	70.898	70.483	71.453	0					55	23	4	0	0	0	0.20304	1	8561	8561		88.643	0	1	1954900			57363	4454	40106	40171	62812	62812					0.06567857045604342
PELGRWEP	8	Unmodified	_PELGRWEP_					0	0	0		nc|ENSG00000112425|O95278-4|EPM2A;nc|ENSG00000112425|O95278-5|EPM2A;nc|ENSG00000112425|O95278-2|EPM2A;ENSG00000112425|ENST00000367519|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.26678466796875	2	492.250892	982.48723	-0.41393	-0.00020376	-1.3535	-0.00066624	-1.7674	-0.00087	492.2498502053922	28.176	0.24685	28.257	28.124	28.37	0.080811					7	5	2	0	0	0	0.027866	1	1572	1572		40.573	0	1	24811			57364	18179	40107	40172	62813	62813					-0.004713857623414697
PELHLDIKV	9	Unmodified	_PELHLDIKV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	OPSCC_39_ClassI_Rep-1	1	532.3080444335938	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.688	1	70.688	70.188	71.188	0								0	0	0	0.42073	1	8546	8546		60.118	5.3419	1				57365	5672	40108	40173	62814	62814					0.0785460251142922
PELKERLLL	9	Unmodified	_PELKERLLL_					0	0	0			REV__ENST00000371822.9_1_X:117480074-117480137:+|nuORF	REV__ENST00000371822.9_1_X:117480074-117480137:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.289794921875	2	555.847699	1109.68084	-0.1803	-0.00010022	-0.060835	-3.3815E-05	-0.24113	-0.00013403	555.8476463530732	67.898	0.51619	67.61	67.307	67.823	-0.28835					24	12	3	0	0	0	0.023837	1	8072	8072		84.916	5.2029	1	220660	+		57366	31179	40109	40174	62815	62815					0.13039150953909484
PELKVNHLI	9	Unmodified	_PELKVNHLI_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8162841796875	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.88411	1	10881	10881		33.516	1.5607	1	3741200	+		57367	20141	40110	40175	62816	62816					0.09498308748334239
PELLAHVVNL	10	Unmodified	_PELLAHVVNL_					0	0	0		KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant;ENSG00000186994|ENST00000330915|KANK3;nc|ENSG00000186994|Q6NY19-1|KANK3	KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.8238525390625	2	552.824224	1103.63389	0.07022	3.8819E-05	-0.93819	-0.00051866	-0.86797	-0.00047984	552.8236513502135	75.429	1.827	75.254	74.943	76.77	-0.17548					114	44	5	0	0	0	0.64538	1	8919	8919		71.877	4.3838	1	12257000			57368	9599	40111	40176	62817	62817					0.08622291402775772
PELLDRAAPL	10	Unmodified	_PELLDRAAPL_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MSMS	OPSCC_39_ClassI_Rep-1	1	547.8137817382812	2	547.813856	1093.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.647	1	56.647	56.147	57.147	0								0	0	0	0.27465	1	6328	6328		76.774	2.5191	1				57369	2095	40112	40177	62818	62818					0.07009701023071102
PELLERPNP	9	Unmodified	_PELLERPNP_					0	0	0			REV__ENSG00000068912|ENST00000185150|ERLEC1	REV__ENSG00000068912|ENST00000185150|ERLEC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2550048828125	2	532.790381	1063.56621	-0.7227	-0.00038505	0.59232	0.00031558	-0.13038	-6.9467E-05	532.7914915172071	52.259	1.1072	52.259	51.942	53.049	0					64	28	3	0	0	0	0.02435	1	5677	5677		42.396	30.189	1	2876700	+		57370	20391	40113	40178	62819	62819					0.036968414719467546
PELLERPNP	9	Unmodified	_PELLERPNP_					0	0	0			REV__ENSG00000068912|ENST00000185150|ERLEC1	REV__ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.790381	1063.56621	-0.88932	-0.00047382	-0.036462	-1.9427E-05	-0.92578	-0.00049325	532.7905880943374	52.283	0.57552	52.164	51.904	52.48	-0.11875	-0.069838	-0.00013958	NaN	42.396	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146100	+		57371	20391	40113	40178							0.036968414719467546
PELLERPNP	9	Unmodified	_PELLERPNP_					0	0	0			REV__ENSG00000068912|ENST00000185150|ERLEC1	REV__ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.790381	1063.56621	-1.089	-0.0005802	0.37774	0.00020126	-0.71124	-0.00037894	532.7906434472854	52.543	0.655	52.274	52.018	52.673	-0.26903	0.039995	0.00030179	NaN	42.396	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1220800	+		57372	20391	40113	40178							0.036968414719467546
PELLERPNP	9	Unmodified	_PELLERPNP_					0	0	0			REV__ENSG00000068912|ENST00000185150|ERLEC1	REV__ENSG00000068912|ENST00000185150|ERLEC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.790381	1063.56621	-0.41816	-0.00022279	-0.14609	-7.7834E-05	-0.56425	-0.00030063	532.790195233075	52.403	0.71012	52.218	51.926	52.636	-0.18495	-0.015363	-0.00025639	NaN	42.396	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1068700	+		57373	20391	40113	40178							0.036968414719467546
PELLFYKV	8	Unmodified	_PELLFYKV_					0	0	0		ENST00000472971.1_1_1:35476328-35477547:-|nuORF	ENST00000472971.1_1_1:35476328-35477547:-|nuORF	ENST00000472971.1_1_1:35476328-35477547:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7142333984375	2	504.791861	1007.56917	-0.66852	-0.00033746	-3.6771	-0.0018562	-4.3456	-0.0021936	504.7897480557284	31.652	0.54552	31.499	31.197	31.742	-0.15231					20	13	2	0	0	0	0.027866	1	2077	2077		12.959	0	1	123810			57374	14999	40114	40179	62820	62820					0.0656871659675744
PELLHDGPVV	10	Unmodified	_PELLHDGPVV_					0	0	0			REV__ENSG00000177272|ENST00000369769|KCNA3	REV__ENSG00000177272|ENST00000369769|KCNA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2483520507812	2	538.292756	1074.57096	-0.71016	-0.00038227	0.42918	0.00023103	-0.28097	-0.00015125	538.2917714874532	56.335	0.20362	56.179	56.011	56.215	-0.15656					6	4	2	0	0	0	0.03519	1	6073	6073		58.782	9.3404	1	46833	+		57375	27097	40115	40180	62821	62821					0.036657256147236694
PELLHFTI	8	Unmodified	_PELLHFTI_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-2|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3094177246094	2	485.273835	968.533118	-0.19352	-9.3912E-05	-4.4773	-0.0021727	-4.6708	-0.0022666	485.2715170911775	65.813	0.52493	65.54	65.195	65.72	-0.27282					19	14	2	0	0	0	0.027866	1	7752	7752		25.45	6.0902	1	192010	+		57376	19969	40116	40181	62822	62822					0.047592594199159066
PELLIFII	8	Unmodified	_PELLIFII_					0	0	0			REV__ENSG00000101916|ENST00000218032|TLR8	REV__ENSG00000101916|ENST00000218032|TLR8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	479.304604	956.594655	-0.13736	-6.5836E-05	-0.42275	-0.00020263	-0.56011	-0.00026846	479.30412249658514	48.91	0.21812	48.757	48.682	48.9	-0.15277					6	5	2	0	0	0	0.027866	1	4999	4999		20.482	0	1	80074	+		57377	21265	40117	40182	62823	62823					0.11462191119198906
PELLRDSRRRS	11	Unmodified	_PELLRDSRRRS_					0	0	0		ENST00000526474.1_1_11:67174309-67174885:+|nuORF	ENST00000526474.1_1_11:67174309-67174885:+|nuORF	ENST00000526474.1_1_11:67174309-67174885:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7718200683594	3	462.263774	1383.76949	-0.38089	-0.00017607	2.1334	0.00098621	1.7525	0.00081014	462.599878857932	23.219	0.15991	23.219	23.123	23.283	0					5	3	2	0	0	0	0.024816	1	888	888		27.644	9.1129	1	53572			57378	16123	40118	40183	62824	62824					0.09295959246264829
PELLREVTL	9	Unmodified	_PELLREVTL_					0	0	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.755859375	2	535.316232	1068.61791	-0.39282	-0.00021028	0.57002	0.00030514	0.1772	9.4858E-05	535.3163709835902	75.84	1.2133	75.665	75.389	76.603	-0.17548					60	29	3	0	0	0	0.02435	1	9083	9083		51.335	15.717	1	989600	+		57379	20327	40119	40184	62825	62825					0.08634585165850694
PELLREVTL	9	Unmodified	_PELLREVTL_					0	0	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.316232	1068.61791	-1.2975	-0.00069456	0.96077	0.00051431	-0.33671	-0.00018025	535.3167743541768	75.684	0.76204	75.684	75.232	75.994	0	-0.0070386	0.00033332	NaN	42.396	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632630	+		57380	20327	40119	40184							0.08634585165850694
PELLREVTL	9	Unmodified	_PELLREVTL_					0	0	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.316232	1068.61791	-0.84583	-0.00045279	0.092819	4.9687E-05	-0.75301	-0.0004031	535.3164727464767	75.902	0.54825	75.658	75.477	76.025	-0.24455	-0.033538	-0.00059593	NaN	42.396	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612820	+		57381	20327	40119	40184							0.08634585165850694
PELNGAAYR	9	Unmodified	_PELNGAAYR_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000514596.1_1_4:1206030-1206831:-|nuORF	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.7554931640625	2	495.753798	989.493044	3.9708	0.0019685	-0.2994	-0.00014843	3.6714	0.0018201	495.75350033943033	18.564	1.2894	18.627	18.097	19.386	0.063307					38	26	2	0	0	0	0.92825	1	238	238		30.504	3.7075	1	27632			57382	6762	40120	40185	62826	62826					-0.0021228725066748666
PELNYQVKV	9	Unmodified	_PELNYQVKV_					0	0	0		ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.8212890625	2	545.300581	1088.58661	0.46233	0.00025211	0.56437	0.00030775	1.0267	0.00055986	545.3013219871641	98.583	0.35919	98.447	98.277	98.636	-0.13625					17	7	3	0	0	0	0.023655	1	12213	12213		79.713	26.776	1	58275			57383	5234	40121	40186	62827	62827					0.0458601213174461
PELPELIAML	10	Unmodified	_PELPELIAML_					0	0	0		CTNND1|p.V371L|1|0.06|ENSG00000198561|chr11:57801887-57801887|G/T|missense_variant	CTNND1|p.V371L|1|0.06|ENSG00000198561|chr11:57801887-57801887|G/T|missense_variant	CTNND1|p.V371L|1|0.06|ENSG00000198561|chr11:57801887-57801887|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.273193359375	2	563.314843	1124.61513	-0.40627	-0.00022886	1.4064	0.00079225	1.0001	0.00056339	563.8156326635476	64.539	0.27605	64.304	64.137	64.413	-0.2345					9	6	2	0	0	0	0.03519	1	7325	7325		23.042	0	1	80641			57384	603	40122	40187	62828	62828					0.05780993716689409
PELPIRVR	8	Unmodified	_PELPIRVR_					0	0	0			REV__ENSG00000237247|ENST00000329753|MBD3L5	REV__ENSG00000237247|ENST00000329753|MBD3L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.74298095703125	2	490.306001	978.597449	-0.54067	-0.00026509	0.026087	1.279E-05	-0.51458	-0.0002523	490.30586885593107	31.595	0.42843	31.354	31.221	31.649	-0.24109					15	10	2	0	0	0	0.027866	1	2131	2131		42.474	0	1	53076	+		57385	28687	40123	40188	62829	62829					0.10729459296715049
PELQNIASSN	10	Unmodified	_PELQNIASSN_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8004150390625	2	536.767103	1071.51965	-0.84952	-0.000456	4.2312	0.0022711	3.3816	0.0018151	536.7690869535579	55.005	0.43676	54.859	54.686	55.123	-0.14609					18	11	2	0	0	0	0.03519	1	5918	5918		26.063	0	1	153650			57386	590	40124	40189	62830	62830					-0.013246431499965183
PELRDILL	8	Unmodified	_PELRDILL_					0	0	0		nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	nc|ENSG00000129353|Q8IWA5-2|SLC44A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3088073730469	2	484.792392	967.570232	-0.35805	-0.00017358	0.78832	0.00038217	0.43027	0.00020859	484.7927516148988	65.456	0.49068	65.493	65.254	65.745	0.037376					22	13	2	0	0	0	0.027866	1	7663	7663		31.955	13.63	1	240900			57387	18261	40125	40190	62831	62831					0.08514930965668555
PELRRGQSMPS	11	Unmodified	_PELRRGQSMPS_					0	0	0		ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	629.796142578125	2	629.322054	1256.62955	-0.59967	-0.00037738	-0.86308	-0.00054316	-1.4628	-0.00092054	629.3208048824313	57.652	0.52747	57.462	57.184	57.712	-0.19018					19	13	2	0	0	0	0.024736	1	6343	6343		22.58	3.4761	1	152460			57388	9165	40126	40191	62832	62832					0.011504589175501678
PELRSDLLL	9	Unmodified	_PELRSDLLL_					0	0	0		ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	ENSG00000198205|ENST00000358697|ZXDA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7636108398438	2	528.308406	1054.60226	-1.7481	-0.00092355	0.27014	0.00014272	-1.478	-0.00078084	528.8082727567372	92.869	0.21362	92.726	92.612	92.826	-0.14356					6	4	2	0	0	0	0.024466	1	11423	11423		39.253	5.7372	1	47755			57389	10107	40127	40192	62833	62833					0.07714298648807016
PELSPGEFPC	10	Unmodified	_PELSPGEFPC_					0	0	0		ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant;ENSG00000101493|ENST00000443185|ZNF516	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2469482421875	2	538.241875	1074.4692	0.11217	6.0375E-05	4.1539	0.0022358	4.2661	0.0022962	538.2448553985078	55.662	1.4268	55.662	55.319	56.745	0					91	39	6	0	0	0	0.91051	1	6188	6188		53.351	2.016	1	12697000			57390	38196	40128	40193	62834	62834					-0.06505888799347304
PELTCLVLLPL	11	Unmodified	_PELTCLVLLPL_					0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8555297851562	2	605.859418	1209.70428	-1.4098	-0.00085415	-4.4694	-0.0027078	-5.8792	-0.003562	605.8565152537026	81.991	1.204	81.991	81.589	82.793	0					74	28	4	0	0	0	0.25842	2	10227	10218;10227		93.195	24.349	1	2448100	+		57391	34834	40129	40194	62835;62836	62836					0.10781828676226723
PELTCLVLLPL	11	Unmodified	_PELTCLVLLPL_					0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.85595703125	2	605.859418	1209.70428	-1.5178	-0.00091959	-4.4839	-0.0027166	-6.0017	-0.0036362	605.8566229471011	82.009	1.0012	82.035	81.7	82.701	0.025711					67	23	4	0	0	0	0.6558	1	10163	10163		66.429	11.707	1	2440500	+		57392	34834	40129	40194	62837	62837					0.10781828676226723
PELTVSVVE	9	Unmodified	_PELTVSVVE_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7647705078125	2	486.76604	971.517527	0.11337	5.5182E-05	-2.9217	-0.0014222	-2.8083	-0.001367	486.76454129353914	19.666	1.1013	19.666	19.414	20.516	0					58	22	4	0	0	0	0.92825	1	464	464		30.504	0	1	1663900			57393	18053	40130	40195	62838	62838					0.030629281121946406
PELTWKKD	8	Unmodified	_PELTWKKD_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7845153808594	2	508.7742	1015.53385	0.2417	0.00012297	1.1725	0.00059654	1.4142	0.00071951	508.77357695889344	72.211	0.41135	71.949	71.761	72.173	-0.26199					13	9	2	0	0	0	0.027866	1	8456	8456		44.117	9.9443	1	44711			57394	9819	40131	40196	62839	62839					0.02670054068948957
PELVGLFRRMS	11	Unmodified	_PELVGLFRRMS_					0	0	0			REV__ENST00000379263.7_1_7:102985147-102985279:-|nuORF	REV__ENST00000379263.7_1_7:102985147-102985279:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.5777282714844	3	435.576302	1303.70708	1.4143	0.00061602	1.8941	0.00082502	3.3084	0.001441	435.57704527423255	110.37	0.77484	110.37	110.08	110.86	0					74	23	4	0	0	0	1.0327	1	14023	14023		29.551	4.4248	1	451640	+		57395	31429	40132	40197	62840	62840					0.06737096853726143
PELVKIADFG	10	Unmodified	_PELVKIADFG_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK;ENSG00000112144|ENST00000676107|CILK1;nc|ENSG00000112144|Q9UPZ9-2|CILK1	nc|ENSG00000111837|P20794-3|MAK;ENSG00000112144|ENST00000676107|CILK1	nc|ENSG00000111837|P20794-3|MAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.831298828125	2	544.802957	1087.59136	-0.5323	-0.00029	-2.7621	-0.0015048	-3.2944	-0.0017948	545.3021121291424	71.616	0.29416	71.627	71.396	71.691	0.010735					9	7	2	0	0	0	0.03519	1	8596	8596		26.693	0	1	74966			57396	3149;3175	40133	40198	62841	62841					0.05106896274514838
PELWMDSPT	9	Unmodified	_PELWMDSPT_					0	0	0		PRR23B|p.R167W|1|0.1|ENSG00000184814|chr3:139020163-139020163|G/A|missense_variant	PRR23B|p.R167W|1|0.1|ENSG00000184814|chr3:139020163-139020163|G/A|missense_variant	PRR23B|p.R167W|1|0.1|ENSG00000184814|chr3:139020163-139020163|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2471923828125	2	538.241875	1074.4692	0.11217	6.0375E-05	4.1539	0.0022358	4.2661	0.0022962	538.2448553985078	55.662	1.4268	55.662	55.319	56.745	0					91	39	6	0	0	0	0.33245	2	6200	6200;6213		71.296	10.324	1	12697000			57397	18998	40134	40199	62842;62843	62842					-0.06505888799347304
PELWTLVL	8	Unmodified	_PELWTLVL_					0	0	0			REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA	REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.3096923828125	2	485.784036	969.553519	-0.22893	-0.00011121	-2.9658	-0.0014407	-3.1947	-0.001552	485.78200218050677	65.634	0.45682	65.393	65.126	65.583	-0.24145					14	10	2	0	0	0	0.027866	1	7509	7509		26.796	0	1	151830	+		57398	19973	40135	40200	62844	62844					0.06752430079700389
PEMELATGSI	10	Unmodified	_PEMELATGSI_					0	0	0			REV__nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	REV__nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.225830078125	2	524.254982	1046.49541	-0.071223	-3.7339E-05	-0.91912	-0.00048185	-0.99034	-0.00051919	524.2541386433697	52.765	0.43446	52.507	52.249	52.683	-0.25839					14	10	2	0	0	0	0.03519	1	5470	5470		27.882	11.409	1	117770	+		57399	36706	40136	40201	62845	62845					-0.025976196278634234
PEMESVDL	8	Unmodified	_PEMESVDL_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11;ZBTB11|p.A533Pfs*14|1|0.15|ENSG00000066422|chr3:101664994-101664994|C/-|frameshift_variant	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.22216796875	2	460.207501	918.400449	0.016606	7.6424E-06	-2.5163	-0.001158	-2.4997	-0.0011504	460.2058244939295	42.537	0.20424	42.404	42.216	42.42	-0.13219					8	5	2	0	0	0	0.027866	1	3903	3903		19.36	5.5846	1	76348			57400	1339	40137	40202	62846	62846					-0.062015530990720436
PEMGAQKALI	10	Unmodified	_PEMGAQKALI_					0	0	0		ENSG00000140675|ENST00000330498|SLC5A2;nc|ENSG00000140675|P31639-2|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	ENSG00000140675|ENST00000330498|SLC5A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2892456054688	2	529.289159	1056.56377	-0.43268	-0.00022901	-2.4697	-0.0013072	-2.9024	-0.0015362	529.2877127758144	57.292	0.72894	57.387	56.846	57.575	0.095306					42	13	5	0	0	0	0.83673	1	6355	6355		58.23	1.5089	1	2787000			57401	5435	40138	40203	62847	62847					0.037746697426428
PEMQLRIRQE	10	Unmodified	_PEMQLRIRQE_					0	0	0		ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7719421386719	3	433.899445	1298.6765	0.57504	0.00024951	0.54569	0.00023677	1.1207	0.00048628	433.89949335793125	25.337	0.24472	25.417	25.254	25.499	0.08009					7	5	2	0	0	0	0.03519	1	1144	1144		14.694	0	1	24540			57402	141	40139	40204	62848	62848					0.03911318468681202
PEMQLRIRQE	10	Unmodified	_PEMQLRIRQE_					0	0	0		ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	433.899445	1298.6765	-0.043952	-1.9071E-05	-6.6785	-0.0028978	-6.7224	-0.0029169	433.8964589818786	25.29	0.54455	25.119	24.869	25.413	-0.17078	-0.14901	-0.0042555	NaN	20.03	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71105			57403	141	40139	40204							0.03911318468681202
PEMRVEPQP	9	Unmodified	_PEMRVEPQP_					0	0	0		ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.2935180664062	2	541.768591	1081.52263	-1.4342	-0.00077698	1.3415	0.0007268	-0.092619	-5.0178E-05	541.7691614482974	40.335	1.06	40.358	39.67	40.73	0.023006					63	29	3	0	0	0	0.02435	1	3389	3389		42.396	16.822	1	1140000			57404	7464	40140	40205	62849	62849					-0.014870912968262928
PEMTSDVPSL	10	Unmodified	_PEMTSDVPSL_					0	0	0		ENST00000497108.6_1_1:150825273-150849043:-|nuORF;ARNT|p.K104Rfs*6|1|0.12|ENSG00000143437|chr1:150839616-150839617|-/GGGTGAATCTC|frameshift_variant;ARNT|p.K104Ifs*19|1|0.11|ENSG00000143437|chr1:150839616-150839617|-/GGGTGAA|frameshift_variant;nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	ENST00000497108.6_1_1:150825273-150849043:-|nuORF	ENST00000497108.6_1_1:150825273-150849043:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.327392578125	2	538.25244	1074.49033	-0.72577	-0.00039065	-3.5629	-0.0019178	-4.2887	-0.0023084	538.2492332367835	99.823	0.15189	99.652	99.605	99.757	-0.17088					6	4	2	0	0	0	0.03519	1	12378	12378		34.173	0	1	39421			57405	133	40141	40206	62850	62850					-0.04393923490488305
PEMVVGWY	8	Unmodified	_PEMVVGWY_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.74322509765625	2	490.730946	979.447339	-0.74204	-0.00036414	4.3576	0.0021384	3.6155	0.0017743	490.7332569429223	31.295	0.61259	31.054	30.794	31.407	-0.24109					21	15	2	0	0	0	0.027866	1	2120	2120		29.842	0	1	111730			57406	3421	40142	40207	62851	62851					-0.04320648757266099
PENDAWNEAE	10	Unmodified	_PENDAWNEAE_					0	0	0			REV__ENSG00000174175|ENST00000263686|SELP	REV__ENSG00000174175|ENST00000263686|SELP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	588.2228393554688	2	587.736	1173.45745	-1.5241	-0.00089576	-1.1009	-0.00064702	-2.6249	-0.0015428	587.7349678236213	84.958	0.58122	84.9	84.605	85.186	-0.05761					24	13	3	0	0	0	0.03519	1	10585	10585		60.118	27.306	1	100650	+		57407	26839	40143	40208	62852	62852					-0.1223441428901424
PENDAWNEAE	10	Unmodified	_PENDAWNEAE_					0	0	0			REV__ENSG00000174175|ENST00000263686|SELP	REV__ENSG00000174175|ENST00000263686|SELP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	588.2228393554688	2	587.736	1173.45745	0.36447	0.00021421	-1.8989	-0.0011161	-1.5345	-0.00090186	587.734286073743	84.903	0.58102	84.929	84.662	85.243	0.025536					29	13	4	0	0	0	0.03519	1	10532	10532		28.081	1.3886	1	114610	+		57408	26839	40143	40208	62853	62853					-0.1223441428901424
PENHLKIQEGT	11	Unmodified	_PENHLKIQEGT_					0	0	0		KCNMA1|p.G649E|1|0.13|ENSG00000156113|chr10:77019082-77019082|C/T|missense_variant	KCNMA1|p.G649E|1|0.13|ENSG00000156113|chr10:77019082-77019082|C/T|missense_variant	KCNMA1|p.G649E|1|0.13|ENSG00000156113|chr10:77019082-77019082|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.27471923828125	3	422.554331	1264.64116	0.9851	0.00041626	-1.5008	-0.00063417	-0.51571	-0.00021791	422.55373999763634	110.01	0.32245	110.01	109.87	110.2	0					16	10	2	0	0	0	0.024774	1	13995	13995		7.6794	0	1	72002			57409	17788	40144	40209	62854	62854					0.01942979212526552
PENLKSKCIP	10	Unmodified	_PENLKSKCIP_					0	0	0		LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant;ENSG00000161904|ENST00000293760|LEMD2;ENST00000514636.1_1_6:33747875-33752267:-|nuORF;ENST00000511171.5_1_6:33747875-33748949:-|nuORF	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	LEMD2|p.M414Rfs*3|1|0.14|ENSG00000161904|chr6:33777155-33777156|-/TC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.7904663085938	2	564.807716	1127.60088	-0.34876	-0.00019698	-0.12027	-6.7929E-05	-0.46903	-0.00026491	564.8075199895703	100.28	0.41592	100.29	100.1	100.51	0.010117					19	8	3	0	0	0	0.03519	1	12813	12813		37.812	6.2817	1	187630			57410	6899	40145	40210	62855	62855					0.042183412884014615
PENLNLVL	8	Unmodified	_PENLNLVL_					0	0	0		nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.26336669921875	2	456.263468	910.512382	-0.11714	-5.3449E-05	0.28782	0.00013132	0.17067	7.7873E-05	456.2634835400152	63.701	0.89034	63.509	63.148	64.038	-0.19243					60	22	4	0	0	0	0.43637	1	7207	7207		92.191	5.256	1	3211700			57411	8652	40146	40211	62856	62856					0.053546690402299646
PENMKDANQ	9	Unmodified	_PENMKDANQ_					0	0	0		ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7894287109375	2	523.732206	1045.44986	-0.33534	-0.00017563	-2.7953	-0.001464	-3.1306	-0.0016396	523.7304701009607	61.749	2.3872	61.492	59.864	62.251	-0.25725					106	59	3	0	0	0	0.024344	1	6775	6775		54.776	11.912	1	369510			57412	8890	40147	40212	62857	62857					-0.07104845090270828
PENRKSKESY	10	Unmodified	_PENRKSKESY_					0	0	0		ENST00000474353.6_1_10:97106208-97250794:-|nuORF	ENST00000474353.6_1_10:97106208-97250794:-|nuORF	ENST00000474353.6_1_10:97106208-97250794:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.2557678222656	3	413.210565	1236.60986	0.71977	0.00029742	-2.7489	-0.0011359	-2.0291	-0.00083845	413.2093312711822	20.605	0.83728	20.409	20.138	20.975	-0.19577					38	16	4	0	0	0	0.03519	1	606	606		28.577	6.0151	1	335070			57413	15031	40148	40213	62858	62858					0.0010240617843919608
PENRTAPII	9	Unmodified	_PENRTAPII_					0	0	0			REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.307861328125	2	505.785099	1009.55564	0.27045	0.00013679	-4.3328	-0.0021915	-4.0623	-0.0020547	505.78278837870573	87.661	1.0156	87.626	87.194	88.209	-0.035355					29	23	2	0	0	0	0.024021	1	10987	10987		49.442	1.5259	1	86776	+		57414	24046	40149	40214	62859	62859					0.05124858817509903
PENRTAPII	9	Unmodified	_PENRTAPII_					0	0	0			REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.785099	1009.55564	0.095456	4.828E-05	-4.3309	-0.0021905	-4.2354	-0.0021422	506.28421549283956	87.704	0.76389	87.704	87.406	88.17	0	0.035193	9.6285E-06	NaN	49.442	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54942	+		57415	24046	40149	40214							0.05124858817509903
PENRTAPII	9	Unmodified	_PENRTAPII_					0	0	0			REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.785099	1009.55564	0.87345	0.00044178	-4.3653	-0.0022079	-3.4918	-0.0017661	505.78264136012626	87.657	0.80659	87.676	87.346	88.153	0.018555	0.0074708	-2.5145E-05	NaN	49.442	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66106	+		57416	24046	40149	40214							0.05124858817509903
PENTLPTPMV	10	Unmodified	_PENTLPTPMV_					0	0	0		nc|ENSG00000099875|Q9HBH9-2|MKNK2;ENSG00000099875|ENST00000250896|MKNK2;ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040131-2040269:-|nuORF	nc|ENSG00000099875|Q9HBH9-2|MKNK2	nc|ENSG00000099875|Q9HBH9-2|MKNK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.77880859375	2	549.778625	1097.5427	-0.22807	-0.00012539	0.1328	7.3009E-05	-0.095278	-5.2382E-05	549.7790481038564	102.27	0.89803	102.26	101.93	102.83	-0.0054474					64	20	4	0	0	0	1.0236	1	13058	13058		42.864	5.7052	1	800720			57417	2092	40150	40215	62860	62860					-0.002173403568804133
PENVIYDL	8	Unmodified	_PENVIYDL_					0	0	0			REV__ENSG00000126934|ENST00000262948|MAP2K2;REV__MAP2K1|p.L313F|1|0.2|ENSG00000169032|chr15:66487271-66487271|G/T|missense_variant	REV__MAP2K1|p.L313F|1|0.2|ENSG00000169032|chr15:66487271-66487271|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.302490234375	2	481.745108	961.475663	-0.36235	-0.00017456	4.0242	0.0019387	3.6619	0.0017641	481.74688537603254	73.665	0.3901	73.401	73.217	73.607	-0.26479					15	9	2	0	0	0	0.027866	1	8655	8655		44.117	0	1	171330	+		57418	22912;36349	40151	40216	62861	62861					-0.006616275763349222
PENVPIGNI	9	Unmodified	_PENVPIGNI_					0	0	0		nc|ENSG00000184226|Q9HC56-2|PCDH9;ENSG00000184226|ENST00000377865|PCDH9	nc|ENSG00000184226|Q9HC56-2|PCDH9	nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.8068542480469	2	476.758549	951.502546	0.69471	0.00033121	-2.2051	-0.0010513	-1.5104	-0.00072008	476.75772173591895	102.51	0.46544	102.38	102.11	102.58	-0.12931					15	10	2	0	0	0	0.024418	1	12720	12720		30.318	0	1	52025			57419	9319	40152	40217	62862	62862					0.024854810348642786
PENWKEHIDN	10	Unmodified	_PENWKEHIDN_					0	0	0		ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.78466796875	3	427.866798	1280.57856	-0.73753	-0.00031556	-1.9188	-0.00082101	-2.6564	-0.0011366	427.86601516741234	25.907	0.2459	25.744	25.588	25.834	-0.16331					7	5	2	0	0	0	0.03519	1	1247	1247		8.7993	0	1	41817			57420	4356	40153	40218	62863	62863					-0.05050166855653515
PEPADLRLP	9	Unmodified	_PEPADLRLP_					0	0	0		nc|ENSG00000145901|Q15025-2|TNIP1;nc|ENSG00000145901|Q15025-6|TNIP1	nc|ENSG00000145901|Q15025-2|TNIP1	nc|ENSG00000145901|Q15025-2|TNIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.2909240722656	2	504.279649	1006.54475	-0.42923	-0.00021645	0.14463	7.2932E-05	-0.2846	-0.00014352	504.27980228987457	54.918	0.37849	54.772	54.533	54.911	-0.14609					11	9	2	0	0	0	0.02435	1	5845	5845		26.693	11.051	1	120830			57421	18360	40154	40219	62864	62864					0.04173456443209034
PEPAEAVD	8	Unmodified	_PEPAEAVD_					0	0	0		ZAN|p.V356E|1|0.28|ENSG00000146839|chr7:100748180-100748180|T/A|missense_variant	ZAN|p.V356E|1|0.28|ENSG00000146839|chr7:100748180-100748180|T/A|missense_variant	ZAN|p.V356E|1|0.28|ENSG00000146839|chr7:100748180-100748180|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.1940002441406	2	414.192708	826.370863	0.55864	0.00023138	-2.1203	-0.0008782	-1.5616	-0.00064682	414.191880333141	83.125	0.60347	82.908	82.612	83.216	-0.217					17	13	2	0	0	0	0.027866	1	10028	10028		25.45	0	1	161420			57422	38170	40155	40220	62865	62865					-0.049267490529132374
PEPAGPELDV	10	Unmodified	_PEPAGPELDV_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2530517578125	2	512.253297	1022.49204	-0.47089	-0.00024122	0.7964	0.00040796	0.32551	0.00016674	512.253782438945	54.125	2.449	54.125	53.655	56.104	0					199	69	5	0	0	0	0.64538	1	5860	5860		71.877	15.156	1	29802000			57423	3030	40156	40221	62866	62866					-0.01830546410246825
PEPALTLVL	9	Unmodified	_PEPALTLVL_					0	0	0		ENST00000436079.1_1_22:21356745-21356943:+|nuORF	ENST00000436079.1_1_22:21356745-21356943:+|nuORF	ENST00000436079.1_1_22:21356745-21356943:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.7623596191406	2	476.789318	951.564084	1.7796	0.0008485	-1.1151	-0.00053165	0.66456	0.00031685	476.7890500259721	63.947	0.14264	63.993	63.939	64.081	0.045502					5	3	2	0	0	0	0.024436	1	7434	7434		38.806	6.8513	1	81588			57424	14273	40157	40222	62867	62867					0.08636412734119858
PEPCSTMESV	10	Unmodified	_PEPCSTMESV_					0	0	0			REV__nc|ENSG00000186654|P85299-2|PRR5	REV__nc|ENSG00000186654|P85299-2|PRR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7943115234375	2	540.222825	1078.4311	-0.20772	-0.00011221	3.9332	0.0021248	3.7255	0.0020126	540.2251955442656	51.823	0.83289	51.639	51.019	51.852	-0.18404					30	21	3	0	0	0	0.03519	1	5286	5286		39.253	3.6345	1	172530	+		57425	27876	40158	40223	62868	62868					-0.10498142776327768
PEPDPVDQLA	10	Unmodified	_PEPDPVDQLA_					0	0	0			REV__ENSG00000135426|ENST00000449076|TESPA1	REV__ENSG00000135426|ENST00000449076|TESPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7640991210938	2	540.764029	1079.5135	-0.15462	-8.3614E-05	0.78863	0.00042646	0.634	0.00034285	540.7643553531553	49.856	1.6841	49.751	49.373	51.057	-0.10558					123	44	5	0	0	0	0.83673	1	5032	5032		58.23	7.0372	1	11601000	+		57426	23543	40159	40224	62869	62869					-0.023071613815318415
PEPDTCHELL	10	Unmodified	_PEPDTCHELL_					0	0	0		ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1;ENSG00000139287|ENST00000333850|TPH2;nc|ENSG00000139287|Q8IWU9-2|TPH2	ENSG00000129167|ENST00000682019|TPH1	ENSG00000129167|ENST00000682019|TPH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	576.803955078125	2	577.263339	1152.51212	-1.4992	-0.00086544	4.3555	0.0025143	2.8563	0.0016489	577.2657583619198	43.068	0.54477	43.068	42.823	43.367	0					21	14	2	0	0	0	0.03519	1	4055	4055		40.778	12.896	1	113970			57427	4334	40160	40225	62870	62870					-0.058031187419373964
PEPDTCHELL	10	Unmodified	_PEPDTCHELL_					0	0	0		ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1;ENSG00000139287|ENST00000333850|TPH2;nc|ENSG00000139287|Q8IWU9-2|TPH2	ENSG00000129167|ENST00000682019|TPH1	ENSG00000129167|ENST00000682019|TPH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.263339	1152.51212	0.040927	2.3625E-05	2.3192	0.0013388	2.3601	0.0013624	577.2647887417583	43.194	0.54744	43.225	43.01	43.558	0.030827	0.078447	-0.0010642	NaN	32.812	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149800			57428	4334	40160	40225							-0.058031187419373964
PEPEDPALVG	10	Unmodified	_PEPEDPALVG_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2540283203125	2	512.253297	1022.49204	-0.47089	-0.00024122	0.7964	0.00040796	0.32551	0.00016674	512.253782438945	54.125	2.449	54.125	53.655	56.104	0					199	69	5	0	0	0	1.0142	1	5894	5894		44.117	0	1	29802000			57429	1103	40161	40226	62871	62871					-0.018305464102354563
PEPELCRPI	9	Unmodified	_PEPELCRPI_					0	0	0		ENST00000477677.5_1_1:85031687-85040098:-|nuORF;ENSG00000117151|ENST00000370630|CTBS	ENST00000477677.5_1_1:85031687-85040098:-|nuORF	ENST00000477677.5_1_1:85031687-85040098:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2764892578125	2	527.273509	1052.53247	0.27936	0.0001473	2.7512	0.0014507	3.0306	0.001598	527.2748931798226	95.226	0.69108	95.23	94.835	95.526	0.0041199					25	15	2	0	0	0	0.024457	1	11995	11995		45.952	20.502	1	90326			57430	3612	40162	40227	62872	62872					0.008300967085460798
PEPERAGAR	9	Unmodified	_PEPERAGAR_					0	0	0		ENST00000464203.1_1_1:156391519-156391591:-|nuORF	ENST00000464203.1_1_1:156391519-156391591:-|nuORF	ENST00000464203.1_1_1:156391519-156391591:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.34552001953125	2	491.756872	981.499192	-0.19365	-9.523E-05	4.3833	0.0021555	4.1897	0.0020603	491.7587881985453	19.517	0.39497	19.356	19.134	19.529	-0.16079					17	7	3	0	0	0	0.024495	1	439	439		19.997	0	1	66441			57431	14753	40163	40228	62873	62873					0.007702309808450991
PEPLEAAGEPA	11	Unmodified	_PEPLEAAGEPA_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7646484375	2	540.764029	1079.5135	-0.15462	-8.3614E-05	0.78863	0.00042646	0.634	0.00034285	540.7643553531553	49.856	1.6841	49.751	49.373	51.057	-0.10558					123	44	5	0	0	0	0.84811	1	5044	5044		54.776	5.3348	1	11601000			57432	9804	40164	40229	62874	62874					-0.023071613815318415
PEPLEAAGEPA	11	Unmodified	_PEPLEAAGEPA_					0	0	0		ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	ENSG00000189325|ENST00000437635|BNIP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7635498046875	2	540.764029	1079.5135	-0.47149	-0.00025496	1.2262	0.00066307	0.75469	0.00040811	540.7645879283925	49.966	1.8384	49.785	49.383	51.222	-0.18071					122	48	4	0	0	0	0.81602	1	5074	5074		56.721	3.7844	1	11458000			57433	9804	40164	40229	62875	62875					-0.023071613815318415
PEPLFVCSY	9	Unmodified	_PEPLFVCSY_					0	0	0			REV__ENSG00000172270|ENST00000333511|BSG	REV__ENSG00000172270|ENST00000333511|BSG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3118896484375	2	527.749336	1053.48412	-0.29828	-0.00015742	-2.3155	-0.001222	-2.6138	-0.0013794	527.7470957878444	36.811	0.43302	36.748	36.508	36.941	-0.063389					14	10	2	0	0	0	0.024354	1	2920	2920		38.806	5.2906	1	144770	+		57434	26655	40165	40230	62876	62876					-0.04048396931352727
PEPLFVCSY	9	Unmodified	_PEPLFVCSY_					0	0	0			REV__ENSG00000172270|ENST00000333511|BSG	REV__ENSG00000172270|ENST00000333511|BSG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.749336	1053.48412	0.13047	6.8856E-05	-4.2612	-0.0022488	-4.1307	-0.00218	527.7467574452562	37.058	0.45519	36.865	36.659	37.114	-0.193	0.024732	-0.00088539	NaN	38.806	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203910	+		57435	26655	40165	40230							-0.04048396931352727
PEPLFVCSY	9	Unmodified	_PEPLFVCSY_					0	0	0			REV__ENSG00000172270|ENST00000333511|BSG	REV__ENSG00000172270|ENST00000333511|BSG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.749336	1053.48412	-0.89076	-0.0004701	-2.866	-0.0015125	-3.7567	-0.0019826	527.7475867275514	37.054	0.54543	36.835	36.607	37.152	-0.2195	-0.0056297	0.00058727	NaN	38.806	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164620	+		57436	26655	40165	40230							-0.04048396931352727
PEPLFVCSY	9	Unmodified	_PEPLFVCSY_					0	0	0			REV__ENSG00000172270|ENST00000333511|BSG	REV__ENSG00000172270|ENST00000333511|BSG	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.749336	1053.48412	0.65869	0.00034762	-4.1782	-0.0022051	-3.5195	-0.0018574	527.7467296024894	37.001	0.43164	36.791	36.605	37.037	-0.2092	-0.048856	-0.00079784	NaN	38.806	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163220	+		57437	26655	40165	40230							-0.04048396931352727
PEPLGTKLS	9	Unmodified	_PEPLGTKLS_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.30303955078125	2	471.26875	940.522947	0.58331	0.0002749	-0.41938	-0.00019764	0.16394	7.7258E-05	471.2684330133796	67.314	0.75236	67.064	66.791	67.544	-0.24939					42	17	3	0	0	0	0.024523	1	7780	7780		21.96	0	1	1579800			57438	8610	40166	40231	62877	62877					0.05030651694653443
PEPLLLSDPQ	10	Unmodified	_PEPLLLSDPQ_					0	0	0			REV__ENST00000525711.1_1_11:122526528-122598239:+|nuORF	REV__ENST00000525711.1_1_11:122526528-122598239:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7730102539062	2	554.797872	1107.58119	-1.079	-0.00059862	4.2605	0.0023637	3.1815	0.0017651	555.3020520518113	37.416	0.57418	37.197	37.114	37.688	-0.2195					16	14	2	0	0	0	0.03519	1	2999	2999		25.574	7.2496	1	184690	+		57439	29908	40167	40232	62878	62878					0.031702885492677524
PEPLPLPLEV	10	Unmodified	_PEPLPLPLEV_					0	0	0		ENSG00000126254|ENST00000262633|RBM42;nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42	ENSG00000126254|ENST00000262633|RBM42	ENSG00000126254|ENST00000262633|RBM42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.7942504882812	2	552.320983	1102.62741	0.11364	6.2765E-05	-3.0007	-0.0016574	-2.8871	-0.0015946	552.3192155861288	42.998	1.0535	43.029	42.722	43.775	0.030827					61	28	3	0	0	0	0.03519	1	3890	3890		26.693	0	1	757100			57440	4190	40168	40233	62879	62879					0.08020353451388473
PEPPDPLYE	9	Unmodified	_PEPPDPLYE_					0	0	0			REV__ORM2|p.Q84Lfs*11|1|0.11|ENSG00000228278|chr9:114330565-114330566|-/TACC|frameshift_variant	REV__ORM2|p.Q84Lfs*11|1|0.11|ENSG00000228278|chr9:114330565-114330566|-/TACC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7484130859375	2	528.747847	1055.48114	0.46157	0.00024405	0.41356	0.00021867	0.87513	0.00046272	528.7478381280127	84.986	3.1781	84.827	84.02	87.198	-0.15869					155	74	4	0	0	0	0.59099	1	10314	10314		53.351	0.41475	1	2044000	+		57441	37335	40169	40234	62880	62880					-0.04437948784516266
PEPPEMES	8	Unmodified	_PEPPEMES_					0	0	0		ENST00000564557.1_1_16:58658671-58663661:-|nuORF	ENST00000564557.1_1_16:58658671-58663661:-|nuORF	ENST00000564557.1_1_16:58658671-58663661:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2889404296875	2	458.191851	914.369149	-0.27839	-0.00012756	-3.2645	-0.0014958	-3.5429	-0.0016233	458.19042017946555	93.742	1.1034	93.737	93.41	94.514	-0.0042038					51	26	3	0	0	0	0.027866	1	11982	11982		13.775	5.544	1	998230			57442	16893	40170	40235	62881	62881					-0.09146126133157395
PEPPEPIGY	9	Unmodified	_PEPPEPIGY_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27716064453125	2	499.745108	997.475663	-0.061578	-3.0773E-05	3.6395	0.0018188	3.5779	0.0017881	500.2480629008636	61.334	0.21412	61.107	61.047	61.261	-0.22663					7	5	2	0	0	0	0.024466	1	7072	7072		25.45	0	1	104330	+		57443	19773	40171	40236	62882	62882					-0.023176275763375997
PEPPKLVN	8	Unmodified	_PEPPKLVN_					0	0	0		ENSG00000185482|ENST00000332782|STAC3;nc|ENSG00000185482|Q96MF2-2|STAC3	ENSG00000185482|ENST00000332782|STAC3	ENSG00000185482|ENST00000332782|STAC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.26898193359375	2	447.258185	892.501818	1.3299	0.00059479	-0.76326	-0.00034138	0.5666	0.00025342	447.2577881832723	63.257	1.0427	63.312	62.76	63.803	0.054104					38	27	2	0	0	0	0.027866	1	7257	7257		7.1934	0	1	341140			57444	9443	40172	40237	62883	62883					0.05126686385801804
PEPPRETQ	8	Unmodified	_PEPPRETQ_					0	0	0		sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7724914550781	2	477.237981	952.461409	-0.010581	-5.0495E-06	0.0069087	3.2971E-06	-0.0036719	-1.7524E-06	477.23802442181585	35.564	0.72413	35.564	35.2	35.924	0					37	18	3	0	0	0	0.027866	1	2802	2802		26.693	0	1	383000			57445	37948	40173	40238	62884	62884					-0.01672280004629556
PEPPRETQ	8	Unmodified	_PEPPRETQ_					0	0	0		sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	sp|P13288|KR2_EBVB9Serine/threonine-proteinkinaseBGLF4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF4PE=1SV=2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7724609375	2	477.237981	952.461409	-0.34465	-0.00016448	0.83779	0.00039982	0.49313	0.00023534	477.2379676609121	36.227	0.41172	36.265	35.997	36.409	0.038044					17	11	3	0	0	0	0.027866	1	2766	2766		40.778	0	1	60936			57446	37948	40173	40238	62885	62885					-0.01672280004629556
PEPPWQGRG	9	Unmodified	_PEPPWQGRG_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2539672851562	2	512.253966	1022.49338	0.0020289	1.0393E-06	-1.0209	-0.00052297	-1.0189	-0.00052193	512.2535245500372	53.952	2.95	54.05	53.631	56.581	0.098015					227	82	5	0	0	0	0.62163	1	5783	5783		51.335	3.6781	1	29194000	+		57447	23469	40174	40239	62886	62886					-0.016968675308021375
PEPPWQGRG	9	Unmodified	_PEPPWQGRG_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2536010742188	2	512.253966	1022.49338	-0.12497	-6.4016E-05	-1.8924	-0.00096938	-2.0174	-0.0010334	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.62163	1	5745	5745		51.335	1.8939	1	54943000	+		57448	23469	40174	40239	62887	62887					-0.016968675308021375
PEPRRRVRVRH	11	Unmodified	_PEPRRRVRVRH_					0	0	0			REV__ENST00000381031.7_1_22:46688787-46688886:+|nuORF	REV__ENST00000381031.7_1_22:46688787-46688886:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.9622497558594	3	486.62727	1456.85998	0.037253	1.8128E-05	-0.18996	-9.2441E-05	-0.15271	-7.4312E-05	486.627050015951	105.28	0.42451	105.15	104.85	105.28	-0.12444					30	11	4	0	0	0	1.0764	1	13089	13089		17.833	3.1395	1	203490	+		57449	31504	40175	40240	62888	62888					0.149824730851833
PEPRYVVSM	9	Oxidation (M)	_PEPRYVVSM(Oxidation (M))_		PEPRYVVSM(1)		PEPRYVVSM(94)	0	0	1		nc|ENSG00000115286|O75251-2|NDUFS7;ENSG00000115286|ENST00000233627|NDUFS7;ENST00000538523.5_1_19:1387763-1393403:+|nuORF;ENST00000436115.6_1_19:1390815-1393403:+|nuORF;ENST00000543289.5_1_19:1388924-1393403:+|nuORF;ENST00000545446.5_1_19:1388688-1393403:+|nuORF	nc|ENSG00000115286|O75251-2|NDUFS7	nc|ENSG00000115286|O75251-2|NDUFS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2755737304688	2	547.270967	1092.52738	-0.59714	-0.0003268	-1.7325	-0.00094813	-2.3296	-0.0012749	547.2694735571696	73.425	0.15778	73.16	73.099	73.256	-0.26479					6	3	2	0	0	0	0.023181	1	8634	8634		94.006	56.847	1	104600			57450	3427	40176	40241	62889	62889		131			-0.015182071540948527
PEPSSTNRSPC	11	Unmodified	_PEPSSTNRSPC_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.3302612304688	2	587.761494	1173.50844	-1.2236	-0.0007192	-1.5386	-0.00090435	-2.7623	-0.0016235	587.760466567743	42.142	0.49906	41.91	41.695	42.194	-0.23186					33	13	3	0	0	0	0.02474	1	3726	3726		32.751	4.8683	1	474890	+		57451	24691	40177	40242	62890	62890					-0.07137788515774446
PEPSSTNRSPC	11	Unmodified	_PEPSSTNRSPC_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	587.761494	1173.50844	-0.78395	-0.00046078	-2.2916	-0.0013469	-3.0755	-0.0018077	587.7599368309403	42.176	0.53265	41.945	41.761	42.294	-0.2303	0.030299	-0.00025804	NaN	38.754	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579070	+		57452	24691	40177	40242							-0.07137788515774446
PEPVFVVSRV	10	Unmodified	_PEPVFVVSRV_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8248901367188	2	564.824224	1127.63389	0.19347	0.00010928	0.31234	0.00017642	0.50581	0.00028569	564.8240843949924	102.11	0.64049	101.98	101.64	102.28	-0.12666					41	16	3	0	0	0	1.0236	1	12700	12700		42.864	3.6114	1	357960	+		57453	28831	40178	40243	62891	62891					0.07518291402743671
PEPWLWPP	8	Unmodified	_PEPWLWPP_					0	0	0		ENST00000590187.2_1_19:19337677-19349276:+|nuORF;NCAN|p.W1092Cfs*32|1|0.39|ENSG00000130287|chr19:19238277-19238277|G/-|frameshift_variant;ENSG00000130287|ENST00000252575|NCAN	ENST00000590187.2_1_19:19337677-19349276:+|nuORF	ENST00000590187.2_1_19:19337677-19349276:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2537231445312	2	511.260728	1020.5069	-0.24382	-0.00012466	3.4598	0.0017688	3.2159	0.0016442	511.2625309302164	55.433	0.91845	55.217	54.493	55.412	-0.21551					33	25	2	0	0	0	0.027866	1	5842	5842		46.766	6.1938	1	218900			57454	4406	40179	40244	62892	62892					-0.0025300975157733774
PEPYHPTL	8	Unmodified	_PEPYHPTL_					0	0	0		ENSG00000145685|ENST00000380345|LHFPL2	ENSG00000145685|ENST00000380345|LHFPL2	ENSG00000145685|ENST00000380345|LHFPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7723693847656	2	477.239993	952.465432	-0.66969	-0.0003196	-2.9813	-0.0014228	-3.651	-0.0017424	477.23831854816984	35.415	0.87836	35.393	34.905	35.783	-0.021767					39	22	3	0	0	0	0.027866	1	2762	2762		18.324	0	1	424250			57455	5824	40180	40245	62893	62893					-0.01270190510899738
PEQALQWL	8	Unmodified	_PEQALQWL_					0	0	0			REV__ENSG00000170075|ENST00000367282|GPR37L1	REV__ENSG00000170075|ENST00000367282|GPR37L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.3109436035156	2	492.761092	983.507631	-0.50798	-0.00025031	1.3852	0.00068256	0.87719	0.00043225	492.7606772745983	61.741	0.68028	61.528	61.252	61.932	-0.21375					28	16	3	0	0	0	0.027866	1	6961	6961		42.396	1.618	1	233070	+		57456	26432	40181	40246	62894	62894					0.0152178489746575
PEQEDAEG	8	Unmodified	_PEQEDAEG_					0	0	0		nc|ENSG00000107371|Q9NQT5-2|EXOSC3;ENSG00000107371|ENST00000327304|EXOSC3	nc|ENSG00000107371|Q9NQT5-2|EXOSC3	nc|ENSG00000107371|Q9NQT5-2|EXOSC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.88134765625	2	437.674879	873.335206	0.54061	0.00023661	-0.093648	-4.0987E-05	0.44696	0.00019562	437.674721482751	39.574	0.20185	39.574	39.495	39.696	0					7	5	2	0	0	0	0.027866	1	3421	3421		60.972	18.576	1	88302			57457	2837	40182	40247	62895	62895					-0.10652831300558319
PEQEEGGE	8	Unmodified	_PEQEEGGE_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.8814392089844	2	437.674879	873.335206	-0.4998	-0.00021875	1.1455	0.00050135	0.64569	0.0002826	437.6752715583159	39.713	0.38511	39.737	39.455	39.84	0.023727					15	10	2	0	0	0	0.027866	1	3364	3364		55.504	18.345	1	109540	+		57458	24832	40183	40248	62896	62896					-0.1065283130054695
PEQISDTTSN	10	Unmodified	_PEQISDTTSN_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.275390625	2	546.2462	1090.47785	-0.41503	-0.00022671	4.3269	0.0023636	3.9119	0.0021368	546.2487914684903	77.543	0.42034	77.543	77.252	77.672	0					12	9	2	0	0	0	0.03519	1	9578	9578		51.193	0	1	52904	+		57459	20312	40184	40249	62897	62897					-0.06377243629185614
PEQKLLAVH	9	Unmodified	_PEQKLLAVH_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.76953125	2	517.803291	1033.59203	-0.34224	-0.00017721	0.22077	0.00011432	-0.12147	-6.2898E-05	517.8033219523076	66.168	0.47455	65.919	65.687	66.162	-0.24928					21	11	2	0	0	0	0.024523	1	7545	7545		21.96	14.27	1	287800	+		57460	23128	40185	40250	62898	62898					0.07657735714224145
PEQLDPWLP	9	Unmodified	_PEQLDPWLP_					0	0	0			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2553100585938	2	547.779482	1093.54441	-1.0261	-0.00056208	-1.6973	-0.00092974	-2.7234	-0.0014918	548.2830208274174	65.845	0.53661	65.632	65.338	65.874	-0.21328					26	12	4	0	0	0	0.02435	1	7548	7548		42.396	0	1	200010	+		57461	24160	40186	40251	62899	62899					0.0013803672338781325
PEQLDPWLP	9	Unmodified	_PEQLDPWLP_					0	0	0			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.779482	1093.54441	-0.12336	-6.7573E-05	0.21283	0.00011658	0.089471	4.9011E-05	547.7787733425981	65.576	0.50688	65.576	65.292	65.799	0	-0.038174	-0.00010981	NaN	26.693	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569410	+		57462	24160	40186	40251							0.0013803672338781325
PEQLDPWLP	9	Unmodified	_PEQLDPWLP_					0	0	0			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.779482	1093.54441	-0.64369	-0.0003526	0.43186	0.00023656	-0.21183	-0.00011604	547.7793258601382	65.872	0.78696	65.599	65.126	65.913	-0.27282	-0.015264	0.00013015	NaN	26.693	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607960	+		57463	24160	40186	40251							0.0013803672338781325
PEQLDPWLP	9	Unmodified	_PEQLDPWLP_					0	0	0			REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	REV__nc|ENSG00000142530|Q6IPT2-2|GARIN5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	547.779482	1093.54441	-0.6708	-0.00036745	0.92751	0.00050807	0.25672	0.00014062	547.7794598571521	65.613	0.67702	65.65	65.221	65.898	0.037376	0.035996	0.00067317	NaN	26.693	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538120	+		57464	24160	40186	40251							0.0013803672338781325
PEQNKTTKT	9	Unmodified	_PEQNKTTKT_					0	0	0		nc|ENSG00000145850|Q96H15-2|TIMD4;ENSG00000145850|ENST00000274532|TIMD4	nc|ENSG00000145850|Q96H15-2|TIMD4	nc|ENSG00000145850|Q96H15-2|TIMD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8008422851562	2	523.77747	1045.54039	-0.13325	-6.9795E-05	0.87268	0.00045709	0.73942	0.00038729	523.7770154820843	19.578	0.1858	19.578	19.414	19.6	0					5	3	2	0	0	0	0.024511	1	413	413		25.574	0	1	26057			57465	5842	40187	40252	62900	62900					0.019439472296653548
PEQPVTLRA	9	Unmodified	_PEQPVTLRA_					0	0	0		ENSG00000184227|ENST00000311148|ACOT1;ENSG00000119673|ENST00000238651|ACOT2	ENSG00000184227|ENST00000311148|ACOT1	ENSG00000184227|ENST00000311148|ACOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.78521728515625	2	505.785099	1009.55564	-0.030706	-1.5531E-05	-0.069291	-3.5046E-05	-0.099997	-5.0577E-05	505.7848783010706	63.972	1.0943	63.721	63.372	64.466	-0.25141					64	29	4	0	0	0	0.19099	1	7509	7509		90.37	22.876	1	3806800			57466	3752	40188	40253	62901	62901					0.051248588175326404
PEQSYFCSSS	10	Unmodified	_PEQSYFCSSS_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.7345581054688	2	567.724046	1133.43354	0.50934	0.00028917	-3.3029	-0.0018751	-2.7935	-0.001586	567.7215298509465	59.407	0.45101	59.216	58.975	59.426	-0.19165					17	10	2	0	0	0	0.03519	1	6582	6582		14.865	0	1	152040	+		57467	23406	40189	40254	62902	62902					-0.12783971047019804
PEQSYRGY	8	Unmodified	_PEQSYRGY_					0	0	0			REV__ENSG00000164338|ENST00000296792|UTP15	REV__ENSG00000164338|ENST00000296792|UTP15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2774658203125	2	500.230156	998.445759	0.16276	8.1417E-05	-0.89357	-0.00044699	-0.73081	-0.00036557	500.2300030320119	61.089	0.18407	61.089	61.032	61.216	0					7	4	2	0	0	0	0.027866	1	7057	7057		35.618	5.1146	1	163110	+		57468	25741	40190	40255	62903	62903					-0.053525665216625384
PEQVACVCEAL	11	Unmodified	_PEQVACVCEAL_					0	0	0		ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	ENSG00000177045|ENST00000317578|SIX5	MSMS	OPSCC_39_ClassI_Rep-1	1	581.26513671875	2	581.267567	1160.52058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	107.48	106.98	107.98	0								0	0	0	1.0998	1	13809	13809		36.447	4.9169	1				57469	8700	40191	40256	62904	62904					-0.05325888096945164
PERAAGFSH	9	Unmodified	_PERAAGFSH_					0	0	0		nc|ENSG00000158158|Q6P4Q7-2|CNNM4	nc|ENSG00000158158|Q6P4Q7-2|CNNM4	nc|ENSG00000158158|Q6P4Q7-2|CNNM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.27154541015625	2	486.238316	970.462078	-0.24378	-0.00011854	-1.1718	-0.00056978	-1.4156	-0.00068832	486.23763807811235	32.767	0.34948	32.83	32.69	33.039	0.062885					16	8	2	0	0	0	0.024541	1	2243	2243		3.1592	0	1	142240			57470	18413	40192	40257	62905	62905					-0.024334405649028668
PERALQLSSH	10	Unmodified	_PERALQLSSH_					0	0	0		ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	ENSG00000075290|ENST00000343737|WNT8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2678833007812	2	569.304187	1136.59382	0.5884	0.00033498	-3.7298	-0.0021234	-3.1414	-0.0017884	569.3020377702707	19.009	0.24638	18.848	18.688	18.935	-0.16079					7	4	2	0	0	0	0.03519	1	355	355		16.717	0	1	25965			57471	1551	40193	40258	62906	62906					0.03098744732187697
PERGIRQW	8	Unmodified	_PERGIRQW_					0	0	0		ENSG00000213413|ENST00000699088|PVRIG;nc|ENSG00000213413|Q6DKI7|PVRIG	ENSG00000213413|ENST00000699088|PVRIG	ENSG00000213413|ENST00000699088|PVRIG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2825927734375	2	521.283057	1040.55156	0.032013	1.6688E-05	-0.68414	-0.00035663	-0.65213	-0.00033994	521.2826567919037	22.242	0.90419	22.04	21.517	22.421	-0.20199					54	18	5	0	0	0	1.0239	1	730	730		33.516	1.5607	1	845950			57472	10504	40194	40259	62907	62907					0.03290814114461682
PERHKLGL	8	Unmodified	_PERHKLGL_					0	0	0			REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2815856933594	2	475.282526	948.550499	-0.49485	-0.0002352	0.55575	0.00026414	0.060895	2.8942E-05	475.28255981142814	34.925	0.85781	34.738	34.402	35.26	-0.18675					53	21	4	0	0	0	0.845	1	2581	2581		55.504	0.60963	1	2386300	+		57473	32769	40195	40260	62908	62908					0.07416599745567964
PERKNIGA	8	Unmodified	_PERKNIGA_					0	0	0			REV__ENST00000557260.1_1_14:104380761-104387854:-|nuORF	REV__ENST00000557260.1_1_14:104380761-104387854:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.23095703125	2	442.751059	883.487565	0.38515	0.00017052	-0.47724	-0.0002113	-0.09209	-4.0773E-05	442.7507271851015	47.595	0.74086	47.408	47.084	47.825	-0.18684					45	19	3	0	0	0	0.027866	1	4620	4620		35.618	20.753	1	1689300	+		57474	35064	40196	40261	62909	62909					0.0411603395750717
PERKQLAIP	9	Unmodified	_PERKQLAIP_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2884521484375	2	526.316566	1050.61858	0.47825	0.00025171	3.0413	0.0016007	3.5195	0.0018524	526.3179978636691	68.444	0.56142	68.214	67.958	68.52	-0.23048					20	13	2	0	0	0	0.024506	1	7895	7895		23.042	0	1	273090			57475	7906	40197	40262	62910	62910					0.09529424605557324
PERLARGA	8	Unmodified	_PERLARGA_					0	0	0			REV__ENST00000372189.7_1_9:134453486-134453633:-|nuORF	REV__ENST00000372189.7_1_9:134453486-134453633:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2515869140625	2	435.251226	868.487899	-0.42314	-0.00018417	0.40683	0.00017707	-0.016314	-7.1006E-06	435.2513153868404	92.011	2.0391	92.011	90.97	93.009	0					95	48	3	0	0	0	1.0574	1	11657	11657		19.36	1.0356	1	2036300	+		57476	31195	40198	40263	62911	62911					0.048394536773685104
PERLVPVSPL	10	Unmodified	_PERLVPVSPL_					0	0	0		ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8300170898438	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0122	1	11296	11296		44.377	5.1244	1	4870500			57477	4028	40199	40264	62912	62912					0.10094577919812764
PERPCVLT	8	Unmodified	_PERPCVLT_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;nc|ENSG00000107164|Q96I24-2|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7666320800781	2	457.741845	913.469137	-0.57515	-0.00026327	-3.86	-0.0017669	-4.4352	-0.0020302	457.7401552163861	39.211	0.77699	39.112	38.737	39.514	-0.098755					40	21	3	0	0	0	0.027866	1	3340	3340		37.159	13.636	1	521030			57478	2828	40200	40265	62913	62913					0.008941559912841512
PERRGLVL	8	Unmodified	_PERRGLVL_					0	0	0		nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.20452880859375	2	470.290351	938.566149	-0.55093	-0.0002591	-0.06791	-3.1938E-05	-0.61884	-0.00029104	470.2902119494257	30.383	0.79646	30.205	29.953	30.75	-0.17817					29	18	3	0	0	0	0.027866	1	1895	1895		44.117	30.341	1	190110			57479	18297	40201	40266	62914	62914					0.09440886262598269
PERRGLVL	8	Unmodified	_PERRGLVL_					0	0	0		nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	470.290351	938.566149	-0.24587	-0.00011563	-0.31569	-0.00014847	-0.56157	-0.0002641	470.2900974797717	30.46	0.45862	30.216	29.948	30.407	-0.24415	-0.0087702	-0.00014716	NaN	44.117	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153990			57480	18297	40201	40266							0.09440886262598269
PERRGLVL	8	Unmodified	_PERRGLVL_					0	0	0		nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	nc|ENSG00000135373|Q9NZC4-3|EHF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.290351	938.566149	-0.42192	-0.00019842	-0.10695	-5.0299E-05	-0.52887	-0.00024872	470.2901958547635	30.402	0.79245	30.253	30.056	30.849	-0.14952	0.028329	4.9172E-05	NaN	44.117	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256500			57481	18297	40201	40266							0.09440886262598269
PERSATLMV	9	Oxidation (M)	_PERSATLM(Oxidation (M))V_		PERSATLM(1)V		PERSATLM(120)V	0	0	1		ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	ENSG00000148468|ENST00000378116|FAM171A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2764892578125	2	510.263142	1018.51173	-0.53847	-0.00027476	-2.7441	-0.0014002	-3.2826	-0.001675	510.26149373040175	72.801	0.96186	72.603	72.077	73.039	-0.19811					52	22	3	0	0	0	0.015495	1	8581	8581		118.74	28.373	1	668110			57482	6032	40202	40267	62915	62915		253			0.0032150632888487962
PERVENQIE	9	Unmodified	_PERVENQIE_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.728759765625	2	557.280377	1112.5462	-0.18743	-0.00010445	-3.7971	-0.0021161	-3.9846	-0.0022205	557.2781007066408	57.183	0.79509	57.019	56.675	57.471	-0.16431					51	21	3	0	0	0	0.024319	1	6454	6454		66.429	11.653	1	1474200			57483	6231	40203	40268	62916	62916					-0.005569542586727039
PERVENQIE	9	Unmodified	_PERVENQIE_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.280377	1112.5462	0.24629	0.00013725	-9.9342	-0.0055361	-9.6879	-0.0053989	557.7732757195139	57.157	0.46266	56.955	56.747	57.21	-0.20209	-0.018037	-0.0068346	NaN	66.429	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1131300			57484	6231	40203	40268							-0.005569542586727039
PERYPLPTV	9	Unmodified	_PERYPLPTV_					0	0	0		ENST00000453368.1_1_2:26799001-26801669:+|nuORF;ENST00000479453.1_1_2:26798863-26800497:+|nuORF;ENSG00000173557|ENST00000329615|FAM166C	ENST00000453368.1_1_2:26799001-26801669:+|nuORF	ENST00000453368.1_1_2:26799001-26801669:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2386474609375	2	536.295299	1070.57605	-1.1095	-0.00059502	2.7039	0.0014501	1.5944	0.00085509	536.7990080095885	60.763	0.1111	60.55	60.493	60.604	-0.21339					4	2	2	0	0	0	0.023239	1	6970	6970		84.916	8.1414	1	22913			57485	8383	40204	40269	62917	62917					0.043580294773164496
PESAGEKAW	9	Unmodified	_PESAGEKAW_					0	0	0			REV__ENST00000483644.1_1_7:44119445-44120350:-|nuORF	REV__ENST00000483644.1_1_7:44119445-44120350:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.77850341796875	2	487.732532	973.45051	-0.40886	-0.00019942	0.40994	0.00019994	0.0010761	5.2486E-07	487.73251287590466	51.877	0.85426	51.758	51.468	52.322	-0.11876					31	22	2	0	0	0	0.024447	1	5444	5444		19.104	0	1	142170	+		57486	30527	40205	40270	62918	62918					-0.03727682378917052
PESAIVAR	8	Unmodified	_PESAIVAR_					0	0	0		ENST00000372336.3_1_10:81145469-81145733:-|nuORF	ENST00000372336.3_1_10:81145469-81145733:-|nuORF	ENST00000372336.3_1_10:81145469-81145733:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.5206604003906	2	421.74016	841.465767	0.040596	1.7121E-05	-3.243	-0.0013677	-3.2024	-0.0013506	421.7411660395458	34.027	0.24245	33.803	33.68	33.923	-0.22412					6	5	2	0	0	0	0.027866	1	2474	2474		23.042	10.083	1	19756			57487	13035	40206	40271	62919	62919					0.03869229208942215
PESATTVKSLI	11	Unmodified	_PESATTVKSLI_					0	0	0		nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.3258666992188	2	573.324254	1144.63395	-0.18255	-0.00010466	2.5933	0.0014868	2.4108	0.0013822	573.3255985273842	72.924	0.87424	72.659	72.343	73.217	-0.26479					47	20	4	0	0	0	1.0017	1	8582	8582		36.447	2.2742	1	1230800			57488	4289	40207	40272	62920	62920					0.06742246612111558
PESDPSNL	8	Unmodified	_PESDPSNL_					0	0	0		nc|ENSG00000288677|P0DUH7|HRURF;ENST00000381418.8_2_8:21988119-21988491:-|nuORF	nc|ENSG00000288677|P0DUH7|HRURF	nc|ENSG00000288677|P0DUH7|HRURF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7376403808594	2	429.695615	857.376677	-0.81148	-0.00034869	-0.87577	-0.00037632	-1.6873	-0.00072501	429.69350076118894	39.899	0.15198	39.787	39.715	39.867	-0.11222					5	3	2	0	0	0	0.027866	1	3457	3457		12.207	0	1	27286			57489	13340	40208	40273	62921	62921					-0.0577165054123725
PESDSQKRAL	10	Unmodified	_PESDSQKRAL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;nc|ENSG00000011405|O00443-2|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8263549804688	2	565.793652	1129.57275	0.50422	0.00028528	-2.6428	-0.0014953	-2.1386	-0.00121	565.7915077644496	100.8	0.58078	100.67	100.59	101.17	-0.13364					22	14	2	0	0	0	0.03519	1	12524	12524		22.58	0	1	94285			57490	895	40209	40274	62922	62922					0.013147346326604747
PESEEEAIF	9	Unmodified	_PESEEEAIF_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2820434570312	2	525.734937	1049.45532	0.13236	6.9588E-05	-0.51265	-0.00026952	-0.38029	-0.00019993	525.7346797285542	63.143	0.4592	62.885	62.663	63.122	-0.25824					19	10	2	0	0	0	0.024436	1	7135	7135		38.806	23.164	1	280710			57491	6661	40210	40275	62923	62923					-0.06742843026813716
PESGELKTL	9	Unmodified	_PESGELKTL_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79229736328125	2	487.263665	972.512776	-0.41024	-0.0001999	0.5839	0.00028451	0.17366	8.4619E-05	487.26418272811287	79.065	1.0838	78.893	78.4	79.484	-0.17226					37	25	3	0	0	0	0.024209	1	9719	9719		47.657	0	1	243690			57492	7399	40211	40276	62924	62924					0.025420439694471497
PESGVIHLL	9	Unmodified	_PESGVIHLL_					0	0	0			REV__ENST00000313683.14_1_19:46974176-46974710:-|nuORF	REV__ENST00000313683.14_1_19:46974176-46974710:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7767333984375	2	482.776742	963.538931	-0.0019381	-9.3566E-07	0.41259	0.00019919	0.41065	0.00019825	482.7765879924584	97.265	1.4826	97.265	96.792	98.275	0					67	33	4	0	0	0	0.88411	1	12424	12424		33.516	0	1	992680	+		57493	30235	40212	40277	62925	62925					0.05570357931560466
PESHILLIL	9	Unmodified	_PESHILLIL_					0	0	0			REV__ENSG00000196539|ENST00000359594|OR2T3	REV__ENSG00000196539|ENST00000359594|OR2T3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2918090820312	2	517.815867	1033.61718	-0.54381	-0.00028159	-1.1944	-0.00061848	-1.7382	-0.00090007	518.3163908449008	54.734	0.669	54.588	54.353	55.022	-0.14609					19	17	2	0	0	0	0.024535	1	5827	5827		7.1934	0	1	168590	+		57494	28193	40213	40278	62926	62926					0.1017179051682433
PESILGEEA	9	Unmodified	_PESILGEEA_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7854309082031	2	472.732197	943.449842	0.35396	0.00016733	3.9893	0.0018859	4.3432	0.0020532	472.7343183783853	54.686	0.34041	54.536	54.442	54.782	-0.15036					14	9	2	0	0	0	0.024457	1	5987	5987		29.15	6.1071	1	97103			57495	7698	40214	40279	62927	62927					-0.02414521818616322
PESIMALII	9	Unmodified	_PESIMALII_					0	0	0			REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7830505371094	2	493.783179	985.551804	-0.012745	-6.2931E-06	0.38314	0.00018919	0.37039	0.00018289	493.7833271997216	82.724	0.94425	82.724	82.279	83.223	0					46	21	4	0	0	0	0.55828	1	10337	10337		55.504	5.4797	1	800000	+		57496	21445	40215	40280	62928	62928					0.05845052999438849
PESIMALII	9	Unmodified	_PESIMALII_					0	0	0			REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7834167480469	2	493.783179	985.551804	-0.49094	-0.00024242	0.91803	0.00045331	0.4271	0.00021089	493.783589375499	82.62	0.89951	82.646	82.273	83.172	0.025879					52	20	4	0	0	0	0.67308	1	10241	10241		47.916	1.9434	1	779320	+		57497	21445	40215	40280	62929	62929					0.05845052999438849
PESISGVL	8	Unmodified	_PESISGVL_					0	0	0			REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF	REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	2	401.221268	800.427984	0.22856	9.1703E-05	-1.4675	-0.00058878	-1.2389	-0.00049707	401.21989123334146	22.114	0.33344	22.039	21.89	22.223	-0.075296					10	6	3	0	0	0	0.027866	1	739	739		26.796	0	1	12583	+		57498	21113	40216	40281	62930	62930					0.019787182234722422
PESLLFLSEL	10	Unmodified	_PESLLFLSEL_					0	0	0			REV__ENST00000541377.5_1_2:122097159-122097282:-|nuORF	REV__ENST00000541377.5_1_2:122097159-122097282:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.793212890625	2	574.315897	1146.61724	-0.74298	-0.0004267	1.6186	0.00092957	0.8756	0.00050287	574.316709874524	30.997	0.69806	31.066	30.829	31.527	0.068962					45	16	4	0	0	0	0.03519	1	2044	2044		5.9211	0	1	551900	+		57499	34770	40217	40282	62931	62931					0.049797457261547606
PESLPFPESP	10	Unmodified	_PESLPFPESP_					0	0	0		ENST00000548710.5_3_12:49760692-49854587:+|nuORF	ENST00000548710.5_3_12:49760692-49854587:+|nuORF	ENST00000548710.5_3_12:49760692-49854587:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.2684936523438	2	550.268947	1098.52334	0.22314	0.00012279	-0.37059	-0.00020393	-0.14745	-8.1138E-05	550.2686800794695	80.319	2.1169	80.113	79.672	81.789	-0.20632					117	50	5	0	0	0	0.77808	1	9679	9679		62.107	12.571	1	6544300			57500	16553	40218	40283	62932	62932					-0.021979733761327225
PESLQWVQ	8	Unmodified	_PESLQWVQ_					0	0	0		ENST00000341189.8_1_X:100878212-100878814:+|nuORF	ENST00000341189.8_1_X:100878212-100878814:+|nuORF	ENST00000341189.8_1_X:100878212-100878814:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7848815917969	2	493.750724	985.486896	-0.62513	-0.00030866	0.78237	0.0003863	0.15724	7.7638E-05	493.7506797837866	46.343	0.51419	46.14	45.892	46.406	-0.20226					21	13	2	0	0	0	0.027866	1	4488	4488		38.806	5.2906	1	744340			57501	12488	40219	40284	62933	62933					-0.006428054821981277
PESPNCLVN	9	Unmodified	_PESPNCLVN_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.29205322265625	2	486.726392	971.438231	0.16189	7.8796E-05	0.89852	0.00043734	1.0604	0.00051613	486.7243327959828	59.957	0.71613	59.781	59.44	60.156	-0.1761					51	18	4	0	0	0	0.024495	1	6659	6659		26.693	11.051	1	298210	+		57502	24254	40220	40285	62934	62934					-0.04863042113595384
PESPRFLL	8	Unmodified	_PESPRFLL_					0	0	0		ENST00000486749.5_1_12:8083049-8088630:-|nuORF;ENSG00000059804|ENST00000075120|SLC2A3;SLC2A14|p.I319Pfs*43|1|0.05|ENSG00000173262|chr12:7821304-7821305|-/GG|frameshift_variant;nc|ENSG00000173262|Q8TDB8-4|SLC2A14;ENSG00000117394|ENST00000426263|SLC2A1;ENSG00000173262|ENST00000431042|SLC2A14;nc|ENSG00000173262|Q8TDB8|SLC2A14;nc|ENSG00000185518|Q7L1I2-2|SV2B;nc|ENSG00000173262|Q8TDB8-5|SLC2A14;ENSG00000185518|ENST00000394232|SV2B;ENSG00000122012|ENST00000502798|SV2C;SLC2A1|p.E221Rfs*17|1|0.17|ENSG00000117394|chr1:42929892-42929893|-/TCGT|frameshift_variant	ENST00000486749.5_1_12:8083049-8088630:-|nuORF;ENSG00000122012|ENST00000502798|SV2C;SLC2A1|p.E221Rfs*17|1|0.17|ENSG00000117394|chr1:42929892-42929893|-/TCGT|frameshift_variant	ENST00000486749.5_1_12:8083049-8088630:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.771240234375	2	479.77146	957.528367	1.1288	0.00054155	-1.202	-0.00057669	-0.073238	-3.5137E-05	479.77082696843894	74.734	1.2646	74.734	74.042	75.307	0					83	30	5	0	0	0	0.95679	1	9132	9132		44.117	5.3107	1	8505600			57503	1227;3906;37882	40221	40286	62935	62935					0.047903752771503605
PESPVIILLFD	11	Unmodified	_PESPVIILLFD_					0	0	0			REV__ENST00000425528.5_3_19:12810876-12810975:-|nuORF	REV__ENST00000425528.5_3_19:12810876-12810975:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.9036865234375	3	414.90419	1241.69074	0.12465	5.172E-05	-2.3369	-0.00096959	-2.2122	-0.00091787	414.9031170326544	44.931	0.99414	44.931	44.348	45.342	0					88	28	5	0	0	0	1.0327	1	4325	4325		29.551	4.4248	1	2310900	+		57504	32256	40222	40287	62936	62936					0.07956294168616296
PESSANIRTL	10	Unmodified	_PESSANIRTL_					0	0	0		ENST00000368178.3_1_1:157716528-157737507:-|nuORF;nc|ENSG00000132704|Q96LA5-2|FCRL2;ENSG00000132704|ENST00000361516|FCRL2	ENST00000368178.3_1_1:157716528-157737507:-|nuORF;ENSG00000132704|ENST00000361516|FCRL2	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.236083984375	2	544.290745	1086.56694	-0.60719	-0.00033049	-4.0924	-0.0022275	-4.6996	-0.0025579	544.2885352054842	58.932	0.31028	58.744	58.509	58.819	-0.18795					9	7	2	0	0	0	0.03519	1	6474	6474		63.534	22.756	1	161510			57505	12883;4646	40223	40288	62937	62937					0.027116361210119067
PESSPTEEIS	10	Unmodified	_PESSPTEEIS_					0	0	0			REV__ENSG00000100395|ENST00000216237|L3MBTL2	REV__ENSG00000100395|ENST00000216237|L3MBTL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.24462890625	2	538.243126	1074.4717	-1.5867	-0.00085406	3.6568	0.0019683	2.0701	0.0011142	538.2457913956628	55.469	1.4948	55.567	55.257	56.752	0.098011					95	40	5	0	0	0	0.57825	1	6070	6070		79.451	10.664	1	10652000	+		57506	21109	40224	40289	62938	62938					-0.06255761860688835
PESTLVKPE	9	Unmodified	_PESTLVKPE_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.2716979980469	2	500.27149	998.528426	-0.41173	-0.00020598	0.8823	0.00044139	0.47056	0.00023541	500.2721469767982	22.041	1.1792	21.965	21.56	22.739	-0.075296					84	24	6	0	0	0	0.39228	1	736	736		66.429	5.4573	1	381020			57507	18053	40225	40290	62939	62939					0.02910330486474777
PESTLVKPE	9	Unmodified	_PESTLVKPE_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	500.27149	998.528426	-0.33683	-0.00016851	1.4103	0.00070555	1.0735	0.00053705	500.27207995308834	22.083	1.0338	22.083	21.723	22.757	0	0.050268	-0.00031528	NaN	66.429	41	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506350			57508	18053	40225	40290							0.02910330486474777
PESTLVKPE	9	Unmodified	_PESTLVKPE_					0	0	0		nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-7|WNK1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	500.27149	998.528426	-0.97624	-0.00048838	2.1186	0.0010599	1.1423	0.00057148	500.2723951072975	21.979	1.4308	22.051	21.451	22.882	0.071487	0.017681	0.00039334	NaN	66.429	68	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489750			57509	18053	40225	40290							0.02910330486474777
PESTVYDDY	9	Unmodified	_PESTVYDDY_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2646484375	2	544.724569	1087.43459	-0.40404	-0.00022009	-4.0779	-0.0022213	-4.4819	-0.0024414	544.7215787226843	58.574	0.72124	58.386	58.136	58.858	-0.18795					30	17	2	0	0	0	0.024354	1	6451	6451		57.811	0	1	906470			57510	3488	40226	40291	62940	62940					-0.10563433406468903
PETACSLTL	9	Unmodified	_PETACSLTL_					0	0	0		ENST00000602865.1_1_1:2282646-2283036:-|nuORF	ENST00000602865.1_1_1:2282646-2283036:-|nuORF	ENST00000602865.1_1_1:2282646-2283036:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.73138427734375	2	467.731143	933.447733	0.088357	4.1327E-05	0.2028	9.4855E-05	0.29116	0.00013618	467.7311157230866	60.365	0.78704	60.168	59.802	60.589	-0.19742					50	19	4	0	0	0	0.35646	1	6728	6728		68.787	2.9837	1	1676600			57511	17535	40227	40292	62941	62941					-0.021652738280749873
PETAKIPL	8	Unmodified	_PETAKIPL_					0	0	0		nc|ENSG00000154556|O94875-10|SORBS2	nc|ENSG00000154556|O94875-10|SORBS2	nc|ENSG00000154556|O94875-10|SORBS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.2513122558594	2	434.760561	867.506569	-1.566	-0.00068084	-2.2604	-0.00098273	-3.8264	-0.0016636	434.75958329440596	92.338	0.78108	92.194	91.747	92.528	-0.14356					23	18	2	0	0	0	0.027866	1	11312	11312		31.955	8.9124	1	98936			57512	18393	40228	40293	62942	62942					0.06751570528570028
PETATLPIA	9	Unmodified	_PETATLPIA_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.75238037109375	2	456.755475	911.496398	-0.16103	-7.3553E-05	-2.5497	-0.0011646	-2.7107	-0.0012381	456.75420670625556	22.793	0.78004	22.718	22.317	23.097	-0.075296					47	16	4	0	0	0	0.92825	1	825	825		30.504	3.8107	1	995320	+		57513	27387	40229	40294	62943	62943					0.03710962803336315
PETCRQIY	8	Unmodified	_PETCRQIY_					0	0	0		ENST00000480519.5_1_1:231114875-231124103:+|nuORF	ENST00000480519.5_1_1:231114875-231124103:+|nuORF	ENST00000480519.5_1_1:231114875-231124103:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2980651855469	2	505.242209	1008.46987	0.33132	0.0001674	4.0925	0.0020677	4.4238	0.0022351	505.24422076783463	37.107	0.49257	36.914	36.697	37.19	-0.193					26	12	3	0	0	0	0.027866	1	2948	2948		26.796	1.3459	1	215830			57514	15201	40230	40295	62944	62944					-0.03403049359656052
PETFRRPQI	9	Unmodified	_PETFRRPQI_					0	0	0		RLF-SMAP2|1|fusion;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2;nc|ENSG00000084070|Q8WU79-3|SMAP2	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.7280883789062	2	572.317097	1142.61964	-0.81157	-0.00046447	0.48357	0.00027676	-0.32799	-0.00018772	572.3172532012379	50.837	1.0559	50.837	50.512	51.568	0					89	29	4	0	0	0	0.024323	1	5462	5462		44.117	12.162	1	2003500			57515	37837	40231	40296	62945	62945					0.054036389744851476
PETFTWEY	8	Unmodified	_PETFTWEY_					0	0	0		ENSG00000108578|ENST00000261714|BLMH;ENST00000582669.1_1_17:28600488-28612498:-|nuORF;ENST00000579325.1_1_17:28601041-28612498:-|nuORF	ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2589111328125	2	536.73474	1071.45493	-0.092372	-4.9579E-05	-0.36253	-0.00019458	-0.4549	-0.00024416	536.734283481096	52.993	0.85056	52.866	52.552	53.402	-0.12705					42	21	3	0	0	0	0.027866	1	5604	5604		33.516	0	1	917630			57516	2911	40232	40297	62946	62946					-0.07794217956006833
PETIIALRG	9	Unmodified	_PETIIALRG_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.28656005859375	2	485.290017	968.565481	0.2133	0.00010351	-3.8434	-0.0018651	-3.6301	-0.0017616	485.28829372610755	18.064	2.2094	17.932	17.464	19.674	-0.13147					99	44	5	0	0	0	0.98697	1	287	287		23.042	0	1	6599700			57517	10205	40233	40298	62947	62947					0.07994046822898326
PETIKSLL	8	Unmodified	_PETIKSLL_					0	0	0		nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH;nc|ENSG00000118961|Q9H6V9-4|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.28472900390625	2	450.773668	899.532783	-0.32921	-0.0001484	0.8091	0.00036472	0.47989	0.00021632	450.77382064697457	53.842	0.53499	53.645	53.387	53.922	-0.19739					39	16	3	0	0	0	0.027866	1	5647	5647		44.117	6.9577	1	3560900			57518	3713	40234	40299	62948	62948					0.07899839700041866
PETILRTSP	9	Unmodified	_PETILRTSP_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3135681152344	2	507.284931	1012.55531	-0.7378	-0.00037427	-2.8744	-0.0014581	-3.6122	-0.0018324	507.78351562250435	64.549	0.1853	64.286	64.155	64.341	-0.2626					5	4	2	0	0	0	0.024323	1	7575	7575		35.618	10.044	1	83683	+		57519	25919	40235	40300	62949	62949					0.04953439097675982
PETKIIFL	8	Unmodified	_PETKIIFL_					0	0	0			REV__ENSG00000176895|ENST00000641490|OR51A7	REV__ENSG00000176895|ENST00000641490|OR51A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7918395996094	2	480.791861	959.569169	1.4333	0.0006891	-1.5667	-0.00075325	-0.13344	-6.4156E-05	480.7910285147904	107.28	0.41655	107.28	107.05	107.47	0					23	9	3	0	0	0	0.81662	2	13772	13772;13783		57.811	4.4598	1	327050	+		57520	27055	40236	40301	62950;62951	62950					0.087767165967648
PETKIIFL	8	Unmodified	_PETKIIFL_					0	0	0			REV__ENSG00000176895|ENST00000641490|OR51A7	REV__ENSG00000176895|ENST00000641490|OR51A7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.791861	959.569169	0.26237	0.00012615	-0.18965	-9.1184E-05	0.072716	3.4961E-05	480.7916092494697	107.22	0.4583	107.22	106.98	107.44	-0.003479	-0.03343	0.00042817	NaN	57.811	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178550	+		57521	27055	40236	40301							0.087767165967648
PETKIIFL	8	Unmodified	_PETKIIFL_					0	0	0			REV__ENSG00000176895|ENST00000641490|OR51A7	REV__ENSG00000176895|ENST00000641490|OR51A7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	480.791861	959.569169	-0.046322	-2.2271E-05	0.81927	0.0003939	0.77295	0.00037163	480.7918687077744	107.39	0.33045	107.39	107.14	107.47	0.0018311	0.13806	0.0013983	NaN	57.811	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63294	+		57522	27055	40236	40301							0.087767165967648
PETKIIFL	8	Unmodified	_PETKIIFL_					0	0	0			REV__ENSG00000176895|ENST00000641490|OR51A7	REV__ENSG00000176895|ENST00000641490|OR51A7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.791861	959.569169	0.81854	0.00039355	-0.37351	-0.00017958	0.44503	0.00021397	480.79138697584483	107.28	0.34349	107.13	106.96	107.3	-0.15772	-0.12882	0.00025137	NaN	57.811	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97401	+		57523	27055	40236	40301							0.087767165967648
PETLGRLLI	9	Unmodified	_PETLGRLLI_					0	0	0		ENSG00000103184|ENST00000251170|SEC14L5;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1	ENSG00000103184|ENST00000251170|SEC14L5;nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3127136230469	2	506.313492	1010.61243	0.8506	0.00043067	-2.9547	-0.001496	-2.1041	-0.0010653	506.3128794979483	64.116	0.91779	64.116	63.736	64.654	0					59	24	4	0	0	0	0.39228	1	7542	7542		66.429	5.4573	1	3461800			57524	4363;2477	40237	40302	62952	62952					0.10754906374052098
PETLPGHTK	9	Unmodified	_PETLPGHTK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2369079589844	2	490.263999	978.513445	0.17199	8.432E-05	2.6552	0.0013017	2.8272	0.0013861	490.26450015345046	99.222	1.1319	99.218	98.767	99.899	-0.0038757					49	25	3	0	0	0	0.024344	1	12606	12606		30.318	0	1	95632			57525	2015	40238	40303	62953	62953					0.02332883409144415
PETLTISE	8	Unmodified	_PETLTISE_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.2279052734375	2	445.22929	888.444028	-0.82305	-0.00036645	-2.1579	-0.00096076	-2.981	-0.0013272	445.22819562186953	26.116	1.543	25.953	25.716	27.259	-0.16331					112	40	4	0	0	0	0.99042	1	1291	1291		38.806	0.052534	1	5899800			57526	7805	40239	40304	62954	62954					-0.004656203302829454
PETMQKRSL	9	Unmodified	_PETMQKRSL_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3164672851562	2	545.289691	1088.56483	-1.0185	-0.00055539	2.0185	0.0011006	0.99994	0.00054526	545.2893590639848	89.791	0.85994	89.791	89.313	90.173	0					44	20	3	0	0	0	0.024418	1	11282	11282		37.812	11.119	1	389580	+		57527	20494	40240	40305	62955	62955					0.02408884111559928
PETPVLPTE	9	Unmodified	_PETPVLPTE_					0	0	0			REV__ENSG00000149968|ENST00000299855|MMP3	REV__ENSG00000149968|ENST00000299855|MMP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.779541015625	2	491.758215	981.501877	-0.49268	-0.00024228	-2.2114	-0.0010875	-2.7041	-0.0013297	491.75694486796937	27.349	0.76109	27.181	26.809	27.57	-0.16816					33	17	3	0	0	0	0.024381	1	1451	1451		15.642	0	1	327860	+		57528	24707	40241	40306	62956	62956					0.01038641595152967
PETPVLPTE	9	Unmodified	_PETPVLPTE_					0	0	0			REV__ENSG00000149968|ENST00000299855|MMP3	REV__ENSG00000149968|ENST00000299855|MMP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.758215	981.501877	-0.067383	-3.3136E-05	-3.1724	-0.0015601	-3.2398	-0.0015932	491.75664971219726	27.407	0.45991	27.25	27.018	27.477	-0.15664	0.020929	-0.00034206	NaN	29.15	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385010	+		57529	24707	40241	40306							0.01038641595152967
PETSALLLM	9	Unmodified	_PETSALLLM_					0	0	0			REV__ENST00000533107.3_1_19:1799652-1806029:-|nuORF	REV__ENST00000533107.3_1_19:1799652-1806029:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.77960205078125	2	487.764986	973.515419	0.43273	0.00021107	2.9628	0.0014451	3.3955	0.0016562	487.7667751375191	75.417	0.19675	75.242	75.154	75.351	-0.17548					5	4	2	0	0	0	0.022127	1	8920	8920		105.27	52.332	1	47619	+		57530	23097	40242	40307	62957	62957					0.027601761027540306
PETTERAKIVI	11	Unmodified	_PETTERAKIVI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9;ENST00000479374.1_1_1:201816429-201819601:+|nuORF	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	418.88677978515625	3	419.578477	1255.7136	-0.18033	-7.5662E-05	-3.0532	-0.0012811	-3.2335	-0.0013567	419.576970986877	22.743	0.2302	22.668	22.554	22.784	-0.075296					5	4	2	0	0	0	0.024759	1	814	814		17.833	8.6502	1	11990			57531	10173	40243	40308	62958	62958					0.09597313286076314
PETVVPPWP	9	Unmodified	_PETVVPPWP_					0	0	0			REV__ENST00000511609.1_1_4:17492283-17494024:-|nuORF	REV__ENST00000511609.1_1_4:17492283-17494024:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2532348632812	2	511.271293	1020.52803	-0.17372	-8.882E-05	2.9784	0.0015228	2.8047	0.001434	511.2729869954541	54.623	0.35775	54.392	54.28	54.638	-0.23087					16	9	2	0	0	0	0.024325	1	5818	5818		40.573	6.4001	1	479600	+		57532	33916	40244	40309	62959	62959					0.018589555572816607
PEVAIVIGL	9	Unmodified	_PEVAIVIGL_					0	0	0		ENST00000523439.1_1_19:57999318-58003198:+|nuORF	ENST00000523439.1_1_19:57999318-58003198:+|nuORF	ENST00000523439.1_1_19:57999318-58003198:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7428283691406	2	455.784036	909.553519	-0.13009	-5.9292E-05	3.1508	0.0014361	3.0207	0.0013768	455.7853012035206	45.631	0.59083	45.379	45.157	45.748	-0.25252					32	16	3	0	0	0	0.024466	1	4381	4381		18.324	0.95945	1	442440			57533	16044	40245	40310	62960	62960					0.09512430079701062
PEVCAAVVLL	10	Carbamidomethyl (C)	_PEVC(Carbamidomethyl (C))AAVVLL_	PEVC(1)AAVVLL		PEVC(66)AAVVLL		0	1	0		SPATA31A1|p.Q1026E|1|0.33|ENSG00000204849|chr9:39360841-39360841|C/G|missense_variant	SPATA31A1|p.Q1026E|1|0.33|ENSG00000204849|chr9:39360841-39360841|C/G|missense_variant	SPATA31A1|p.Q1026E|1|0.33|ENSG00000204849|chr9:39360841-39360841|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7979125976562	2	535.79936	1069.58417	-0.29516	-0.00015815	-2.7028	-0.0014482	-2.998	-0.0016063	535.7977271491579	89.167	1.6159	89.183	88.753	90.368	0.015907					83	38	4	0	0	0	0.72219	2	11166	11166;11178		65.803	14.61	1	2684600			57534	37957	40246	40311	62961;62962	62961	492				0.05215840402433969
PEVCAAVVLL	10	Carbamidomethyl (C)	_PEVC(Carbamidomethyl (C))AAVVLL_	PEVC(1)AAVVLL		PEVC(79)AAVVLL		0	1	0		SPATA31A1|p.Q1026E|1|0.33|ENSG00000204849|chr9:39360841-39360841|C/G|missense_variant	SPATA31A1|p.Q1026E|1|0.33|ENSG00000204849|chr9:39360841-39360841|C/G|missense_variant	SPATA31A1|p.Q1026E|1|0.33|ENSG00000204849|chr9:39360841-39360841|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.79833984375	2	535.79936	1069.58417	-0.53181	-0.00028495	-2.303	-0.0012339	-2.8348	-0.0015189	535.797941737191	89.075	1.3545	88.948	88.405	89.76	-0.12774					75	31	4	0	0	0	0.57825	1	10867	10867		79.451	13.022	1	1107800			57535	37957	40246	40311	62963	62963	492				0.05215840402433969
PEVDKKLRKR	10	Unmodified	_PEVDKKLRKR_					0	0	0			REV__ENSG00000176946|ENST00000407315|THAP4	REV__ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.8932495117188	2	634.893503	1267.77245	0.73687	0.00046784	-1.9199	-0.0012189	-1.183	-0.00075107	634.8922740551877	104.3	1.0119	104.3	103.98	104.99	0.0031357					77	28	5	0	0	0	1.0992	1	13366	13366		32.812	0.061884	1	1973800	+		57536	27065	40247	40312	62964	62964					0.1492783437106482
PEVDKKLRKR	10	Unmodified	_PEVDKKLRKR_					0	0	0			REV__ENSG00000176946|ENST00000407315|THAP4	REV__ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	634.8928833007812	2	634.893503	1267.77245	0.034626	2.1984E-05	-1.7703	-0.0011239	-1.7357	-0.001102	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	1.0508	1	13326	13326		39.253	2.8061	1	2042800	+		57537	27065	40247	40312	62965	62965					0.1492783437106482
PEVDKKLRKR	10	Unmodified	_PEVDKKLRKR_					0	0	0			REV__ENSG00000176946|ENST00000407315|THAP4	REV__ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.8926391601562	2	634.893503	1267.77245	0.12287	7.8009E-05	-2.1001	-0.0013333	-1.9772	-0.0012553	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0992	1	12997	12997		32.812	0.85756	1	1729500	+		57538	27065	40247	40312	62966	62966					0.1492783437106482
PEVEGPQKL	9	Unmodified	_PEVEGPQKL_					0	0	0			REV__ENST00000540608.5_1_18:21148944-21166448:-|nuORF	REV__ENST00000540608.5_1_18:21148944-21166448:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7712097167969	2	498.771657	995.528761	0.43234	0.00021564	-1.7911	-0.00089334	-1.3587	-0.0006777	498.77066535088994	104.85	1.772	104.85	104.16	105.93	0					146	51	5	0	0	0	0.77768	1	13486	13486		40.778	1.5253	1	5167900	+		57539	34750	40248	40313	62967	62967					0.030817502063428037
PEVITALSKV	10	Unmodified	_PEVITALSKV_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8193359375	2	528.818607	1055.62266	0.4704	0.00024876	1.084	0.00057325	1.5544	0.00082201	528.8187812301243	70.314	1.4505	70.021	69.467	70.918	-0.29291					101	39	4	0	0	0	0.77808	1	8537	8537		62.107	1.1355	1	14037000			57540	3387	40249	40314	62968	62968					0.09707469308614236
PEVKKKWSH	9	Unmodified	_PEVKKKWSH_					0	0	0		NAIF1|p.D74H|1|0.85|ENSG00000171169|chr9:128066882-128066882|C/G|missense_variant	NAIF1|p.D74H|1|0.85|ENSG00000171169|chr9:128066882-128066882|C/G|missense_variant	NAIF1|p.D74H|1|0.85|ENSG00000171169|chr9:128066882-128066882|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2678833007812	2	569.822015	1137.62948	0.66704	0.00038009	2.8582	0.0016287	3.5252	0.0020088	569.8248036804853	18.856	0.29617	18.699	18.544	18.84	-0.15637					10	5	3	0	0	0	0.024495	1	355	355		14.137	0	1	13236			57541	18019	40250	40315	62969	62969					0.06616826979848156
PEVKKVPEY	9	Unmodified	_PEVKKVPEY_					0	0	0		nc|ENSG00000188659|Q658L1-2|SAXO2;nc|ENSG00000188659|Q658L1|SAXO2;ENSG00000188659|ENST00000682753|SAXO2	nc|ENSG00000188659|Q658L1-2|SAXO2	nc|ENSG00000188659|Q658L1-2|SAXO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.8214111328125	2	544.802957	1087.59136	-0.43078	-0.00023469	-2.6081	-0.0014209	-3.0389	-0.0016556	545.302405189478	98.576	0.43318	98.586	98.48	98.913	0.010231					15	9	2	0	0	0	0.024323	1	12574	12574		53.351	0	1	37996			57542	9738	40251	40316	62970	62970					0.05106896274514838
PEVLEILK	8	Unmodified	_PEVLEILK_					0	0	0		ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	ENSG00000129932|ENST00000427575|DOHH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7774963378906	2	470.789318	939.564084	-0.18989	-8.9398E-05	-1.5158	-0.00071361	-1.7057	-0.00080301	470.78852573801265	29.115	0.32088	29.118	28.883	29.204	0.0031376					12	7	2	0	0	0	0.027866	1	1731	1731		25.45	1.2474	1	88621			57543	4372	40252	40317	62971	62971					0.09188412734158646
PEVLGLQGEN	10	Unmodified	_PEVLGLQGEN_					0	0	0		ENST00000424989.1_1_1:37921396-37939753:-|nuORF	ENST00000424989.1_1_1:37921396-37939753:-|nuORF	ENST00000424989.1_1_1:37921396-37939753:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.81494140625	2	528.272021	1054.52949	0.17468	9.228E-05	-0.96572	-0.00051016	-0.79104	-0.00041788	528.2714115189294	43.5	0.76318	43.531	43.229	43.992	0.030823					37	20	2	0	0	0	0.03519	1	4070	4070		67.494	19.534	1	1105700			57544	14056	40253	40318	62972	62972					0.0044054485538254085
PEVLKKFID	9	Unmodified	_PEVLKKFID_					0	0	0		CON__P09870	CON__P09870	CON__P09870	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8307495117188	2	544.82115	1087.62775	-0.11191	-6.097E-05	0.072263	3.937E-05	-0.039646	-2.16E-05	544.8210004558912	71.656	0.87764	71.368	70.96	71.838	-0.28858					85	22	5	0	0	0	0.024405	1	8660	8660		27.882	4.8398	1	3555200		+	57545	516	40254	40319	62973	62973					0.08743773171227076
PEVLTLYV	8	Unmodified	_PEVLTLYV_					0	0	0			REV__nc|ENSG00000175348|Q9NQ34-2|TMEM9B	REV__nc|ENSG00000175348|Q9NQ34-2|TMEM9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.26739501953125	2	467.268219	932.521884	0.16418	7.6718E-05	-2.9591	-0.0013827	-2.7949	-0.001306	467.2667465926236	19.96	0.62579	19.792	19.423	20.049	-0.16774					26	12	3	0	0	0	1.0133	1	500	500		35.201	1.6851	1	497420	+		57546	26943	40255	40320	62974	62974					0.05292437325749688
PEVLVPIRLD	10	Unmodified	_PEVLVPIRLD_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8434448242188	2	575.845156	1149.67576	-0.28293	-0.00016292	-3.4922	-0.002011	-3.7752	-0.0021739	575.8429192855604	88.171	0.79576	88	87.542	88.338	-0.17054					54	19	4	0	0	0	1.1265	1	10739	10739		24.519	2.5593	1	700540			57547	2103	40256	40321	62975	62975					0.10690847091268552
PEVNQKLTK	9	Unmodified	_PEVNQKLTK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11;KIF11|p.A373T|1|0.16|ENSG00000138160|chr10:92616821-92616821|G/A|missense_variant	ENSG00000138160|ENST00000260731|KIF11;KIF11|p.A373T|1|0.16|ENSG00000138160|chr10:92616821-92616821|G/A|missense_variant	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.748291015625	2	528.806031	1055.59751	0.22726	0.00012017	-1.1043	-0.00058394	-0.877	-0.00046376	528.8056878581443	85.142	0.32131	84.947	84.808	85.129	-0.19508					9	7	2	0	0	0	0.024397	1	10312	10312		39.253	0	1	44605			57548	5213;17795	40257	40322	62976	62976					0.07193414506014051
PEVPPGALLV	10	Unmodified	_PEVPPGALLV_					0	0	0		ENST00000464994.5_1_2:102608489-102626165:+|nuORF;ENST00000332549.7_1_2:102608419-102626165:+|nuORF	ENST00000464994.5_1_2:102608489-102626165:+|nuORF	ENST00000464994.5_1_2:102608489-102626165:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.26617431640625	2	496.294768	990.574983	0.36257	0.00017994	-0.22434	-0.00011134	0.13823	6.8601E-05	496.29452336706305	87.535	0.72458	87.5	87.236	87.961	-0.035355					41	17	4	0	0	0	0.03519	1	10943	10943		29.15	0	1	632430			57549	12357	40258	40323	62977	62977					0.07931815108429419
PEVPPPPPPP	10	Unmodified	_PEVPPPPPPP_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.32757568359375	2	512.279118	1022.54368	-0.24957	-0.00012785	4.2927	0.0021991	4.0431	0.0020712	512.2802158070332	96.795	1.1918	96.634	96.209	97.401	-0.16106					59	26	3	0	0	0	0.03519	1	11914	11914		29.15	0	1	60491	+		57550	23961	40259	40324	62978	62978					0.03331242074318652
PEVQRMPSV	9	Unmodified	_PEVQRMPSV_					0	0	0			REV__ENSG00000104529|ENST00000618139|EEF1D	REV__ENSG00000104529|ENST00000618139|EEF1D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.768310546875	2	521.771134	1041.52771	-0.24939	-0.00013012	-3.7632	-0.0019635	-4.0126	-0.0020936	521.7690494448261	55.669	1.0713	55.513	54.923	55.995	-0.15601					66	29	4	0	0	0	0.48817	1	6153	6153		60.118	8.9256	1	8170400	+		57551	21450	40260	40325	62979	62979					0.008612125657919023
PEVVMLINN	9	Unmodified	_PEVVMLINN_					0	0	0		ENST00000296218.7_1_1:38031241-38031424:+|nuORF	ENST00000296218.7_1_1:38031241-38031424:+|nuORF	ENST00000296218.7_1_1:38031241-38031424:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8182373046875	2	514.775885	1027.53722	0.42226	0.00021737	-2.9642	-0.0015259	-2.542	-0.0013086	514.7742075528029	71.946	1.386	71.657	71.234	72.62	-0.28858					60	35	2	0	0	0	0.024263	1	8815	8815		51.335	6.9583	1	1681400			57552	11838	40261	40326	62980	62980					0.024549808513029348
PEWLRAEV	8	Unmodified	_PEWLRAEV_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.6041259765625	2	500.266542	998.51853	-1.5093	-0.00075507	0.80864	0.00040453	-0.7007	-0.00035054	500.26689939176464	55.966	0.84398	55.751	55.234	56.078	-0.21551					32	22	2	0	0	0	0.027866	1	6069	6069		21.96	9.753	1	484520			57553	185	40262	40327	62981	62981					0.01921187271761937
PEWREDVGL	9	Unmodified	_PEWREDVGL_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.7413330078125	2	550.772188	1099.52982	0.2371	0.00013059	0.8231	0.00045334	1.0602	0.00058393	551.2740402883361	65.838	1.0998	65.838	65.124	66.224	0					66	29	3	0	0	0	0.024427	1	7821	7821		42.396	13.247	1	212810			57554	9391	40263	40328	62982	62982					-0.015960354247454234
PEYCHIEEL	9	Unmodified	_PEYCHIEEL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3134155273438	2	566.752607	1131.49066	0.23552	0.00013348	2.2121	0.0012537	2.4476	0.0013872	566.7538097084304	68.216	2.0877	67.985	67.252	69.34	-0.23047					99	50	3	0	0	0	0.024457	1	7837	7837		29.15	0	1	283900	+		57555	23178	40264	40329	62983	62983					-0.0698250377063232
PEYFLLEQVQ	10	Unmodified	_PEYFLLEQVQ_					0	0	0			REV__ENSG00000119411|ENST00000374183|BSPRY	REV__ENSG00000119411|ENST00000374183|BSPRY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.25830078125	3	422.551928	1264.63395	0.045688	1.9306E-05	-1.9764	-0.00083511	-1.9307	-0.00081581	422.5510041946265	27.806	0.99315	27.652	26.89	27.883	-0.15382					41	23	3	0	0	0	0.03519	1	1486	1486		59.931	3.2985	1	223410	+		57556	22455	40265	40330	62984	62984					0.012222466120874742
PEYYLLCQPA	10	Unmodified	_PEYYLLCQPA_					0	0	0			REV__nc|ENSG00000211701|A0A0A0MS02|TRGV1	REV__nc|ENSG00000211701|A0A0A0MS02|TRGV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.2756958007812	2	598.78645	1195.55835	-0.42532	-0.00025467	-3.8822	-0.0023246	-4.3075	-0.0025793	599.2853947006432	69.197	0.33495	68.974	68.81	69.145	-0.22245					12	7	2	0	0	0	0.03519	1	8000	8000		20.947	0	1	201650	+		57557	37097	40266	40331	62985	62985					-0.03161053839835404
PFAAGPRPPHH	11	Unmodified	_PFAAGPRPPHH_					0	0	0		nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432-2|EIF4G3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	591.7877197265625	2	592.309606	1182.60466	-0.72486	-0.00042934	-0.39602	-0.00023457	-1.1209	-0.00066391	592.3096598557211	63.975	0.47403	63.747	63.475	63.949	-0.22773					17	11	2	0	0	0	0.024743	1	7241	7241		35.618	19.145	1	131430			57558	18081	40267	40332	62986	62986					0.020661918970972692
PFAAGPRPPHH	11	Unmodified	_PFAAGPRPPHH_					0	0	0		nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432-2|EIF4G3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.309606	1182.60466	-0.77806	-0.00046085	-1.11	-0.00065747	-1.8881	-0.0011183	592.3092079979536	63.963	0.39917	63.771	63.601	64	-0.19243	0.011901	-0.00052844	NaN	27.882	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173250			57559	18081	40267	40332							0.020661918970972692
PFAAPPWSR	9	Unmodified	_PFAAPPWSR_					0	0	0			REV__nc|ENSG00000135503|P36896-2|ACVR1B	REV__nc|ENSG00000135503|P36896-2|ACVR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3082885742188	2	514.769252	1027.52395	-0.13512	-6.9554E-05	-1.6954	-0.00087273	-1.8305	-0.00094229	514.7683957229344	87.157	0.58258	86.978	86.655	87.238	-0.17874					17	13	2	0	0	0	0.024323	1	10589	10589		53.351	19.836	1	71750	+		57560	36688	40268	40333	62987	62987					0.011289108542086979
PFAIRIEPK	9	Unmodified	_PFAIRIEPK_					0	0	0			REV__ENST00000580291.5_1_17:21121544-21121697:+|nuORF	REV__ENST00000580291.5_1_17:21121544-21121697:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2708740234375	2	535.821484	1069.62842	-0.28016	-0.00015012	-2.648	-0.0014189	-2.9282	-0.001569	535.8198857585868	52.831	0.42921	52.684	52.406	52.835	-0.14723					13	10	2	0	0	0	0.024292	1	5625	5625		58.782	5.8453	1	63930	+		57561	35513	40269	40334	62988	62988					0.09638612610933706
PFALIPNKG	9	Unmodified	_PFALIPNKG_					0	0	0			REV__ENST00000484590.1_1_2:9539095-9539452:+|nuORF	REV__ENST00000484590.1_1_2:9539095-9539452:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.8032531738281	2	478.781828	955.549102	0.4411	0.00021119	-4.1394	-0.0019819	-3.6983	-0.0017707	478.7794637362177	52.254	0.83102	52.254	51.803	52.634	0					38	21	2	0	0	0	0.024466	1	5626	5626		12.207	0	1	955000	+		57562	33544	40270	40335	62989	62989					0.0695496565680287
PFALNAETL	9	Unmodified	_PFALNAETL_					0	0	0			REV__ENST00000395756.5_1_17:17715494-17715812:-|nuORF	REV__ENST00000395756.5_1_17:17715494-17715812:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7906494140625	2	488.260925	974.507297	-0.92917	-0.00045368	1.0231	0.00049955	0.093946	4.587E-05	488.26134623335287	84.1	0.76731	84.126	83.771	84.538	0.026558					33	17	3	0	0	0	0.024262	1	10398	10398		47.916	18.766	1	333250	+		57563	31712	40271	40336	62990	62990					0.01902365177613774
PFALPAWVP	9	Unmodified	_PFALPAWVP_					0	0	0			REV__ENST00000479915.5_1_7:76129456-76134915:+|nuORF	REV__ENST00000479915.5_1_7:76129456-76134915:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.6050720214844	2	499.278921	996.543289	-1.1823	-0.00059031	0.82282	0.00041082	-0.35951	-0.00017949	499.2793598799606	56.197	0.86201	55.981	55.336	56.198	-0.21551					31	22	2	0	0	0	0.024389	1	6083	6083		29.842	8.1392	1	247160	+		57564	33411	40272	40337	62991	62991					0.04487867145121527
PFALPSPSTW	10	Unmodified	_PFALPSPSTW_					0	0	0		ENST00000415766.7_1_16:67840973-67855117:+|nuORF	ENST00000415766.7_1_16:67840973-67855117:+|nuORF	ENST00000415766.7_1_16:67840973-67855117:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.2539672851562	2	551.782025	1101.5495	-0.5499	-0.00030343	-4.0705	-0.002246	-4.6204	-0.0025494	551.7797034423312	46.79	1.003	46.841	46.203	47.206	0.051399					47	27	3	0	0	0	0.03519	1	4496	4496		34.173	8.5985	1	219910			57565	13884	40273	40338	62992	62992					0.0027834058598728006
PFALSSLAPL	10	Unmodified	_PFALSSLAPL_					0	0	0			REV__ENST00000494150.1_1_22:39478019-39478325:+|nuORF	REV__ENST00000494150.1_1_22:39478019-39478325:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7691345214844	2	508.294768	1014.57498	-0.52924	-0.00026901	-3.7406	-0.0019013	-4.2699	-0.0021703	508.2927264319614	23.255	0.71056	23.331	22.98	23.69	0.076241					29	16	2	0	0	0	0.03519	1	804	804		24.203	0	1	304110	+		57566	33776	40274	40339	62993	62993					0.06827815108408686
PFAPETPIPG	10	Unmodified	_PFAPETPIPG_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2965698242188	2	513.26875	1024.52295	-0.51849	-0.00026612	0.30834	0.00015826	-0.21015	-0.00010786	513.2688350258451	85.199	1.4075	85.141	84.236	85.643	-0.05761					61	33	3	0	0	0	0.03519	1	10693	10693		33.516	0	1	405170			57567	5225	40275	40340	62994	62994					0.011666516946434058
PFAPETPIPG	10	Unmodified	_PFAPETPIPG_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.26875	1024.52295	0.30962	0.00015892	-0.068667	-3.5245E-05	0.24095	0.00012367	513.2686063344674	85.162	2.4196	84.967	84.132	86.552	-0.19508	-0.01777	0.00013407	NaN	25.45	89	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370880			57568	5225	40275	40340							0.011666516946434058
PFAPETPIPG	10	Unmodified	_PFAPETPIPG_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.26875	1024.52295	0.70847	0.00036364	-0.49241	-0.00025274	0.21606	0.0001109	513.2683825345455	85.041	2.2005	84.883	84.322	86.523	-0.15781	-0.10227	-0.00030091	NaN	25.45	103	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411330			57569	5225	40275	40340							0.011666516946434058
PFAPETPIPG	10	Unmodified	_PFAPETPIPG_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.26875	1024.52295	0.45729	0.00023472	-0.51294	-0.00026328	-0.055649	-2.8563E-05	513.2683695855649	85.086	2.3347	84.949	84.152	86.486	-0.13753	-0.036196	-0.00032199	NaN	25.45	87	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368320			57570	5225	40275	40340							0.011666516946434058
PFAVKTWPT	9	Unmodified	_PFAVKTWPT_					0	0	0			REV__ENST00000588362.1_1_19:45683194-45684626:+|nuORF	REV__ENST00000588362.1_1_19:45683194-45684626:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3032836914062	2	523.78711	1045.55967	-0.52868	-0.00027692	-2.4954	-0.0013071	-3.0241	-0.001584	524.2878644808156	88.268	0.24171	88.097	87.931	88.173	-0.17054					6	5	2	0	0	0	0.024523	1	10759	10759		21.96	9.753	1	45825	+		57571	35651	40276	40341	62995	62995					0.038709483112370435
PFAVSALIN	9	Unmodified	_PFAVSALIN_					0	0	0			REV__ENSG00000136197|ENST00000350427|C7orf25	REV__ENSG00000136197|ENST00000350427|C7orf25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.7774658203125	2	466.26601	930.517468	0.25007	0.0001166	-0.29659	-0.00013829	-0.04652	-2.1691E-05	466.26568765801363	81.797	1.06	81.603	81.171	82.231	-0.19334					54	24	4	0	0	0	0.024205	1	9810	9810		44.117	11.304	1	257190	+		57572	23636	40277	40342	62996	62996					0.04942972902847487
PFCACSPQQPW	11	Unmodified	_PFCACSPQQPW_					0	0	0			REV__ENST00000294507.3_1_1:31205470-31205635:-|nuORF	REV__ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	632.2662353515625	2	632.267901	1262.52125	-0.96481	-0.00061002	-2.3308	-0.0014737	-3.2956	-0.0020837	632.2664681287137	33.148	1.2686	32.983	32.638	33.906	-0.16565					85	31	4	0	0	0	0.92638	1	2321	2321		32.812	0	1	2745100	+		57573	29965	40278	40343	62997	62997					-0.0995104865723988
PFCILLVQV	9	Unmodified	_PFCILLVQV_					0	0	0			REV__ENST00000580552.1_1_18:71814318-71814985:-|nuORF	REV__ENST00000580552.1_1_18:71814318-71814985:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2738037109375	2	516.301539	1030.58852	-0.54507	-0.00028142	2.0762	0.001072	1.5312	0.00079054	516.8043062674516	45.391	0.19817	45.243	45.148	45.346	-0.1488					6	5	2	0	0	0	0.024466	1	4399	4399		33.516	19.74	1	201280	+		57574	35520	40279	40344	62998	62998					0.07445349616023123
PFCNWLLN	8	Unmodified	_PFCNWLLN_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.76629638671875	2	503.744388	1005.47422	0.4833	0.00024346	2.418	0.0012181	2.9013	0.0014615	503.74554322777175	58.467	0.5549	58.559	58.371	58.926	0.091217					31	14	3	0	0	0	0.027866	1	6525	6525		28.254	0	1	709300	+		57575	27746	40280	40345	62999	62999					-0.028295401460809444
PFDSGIPLQ	9	Unmodified	_PFDSGIPLQ_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.25	2	487.2531	972.491647	-0.52146	-0.00025408	-1.2907	-0.00062889	-1.8122	-0.00088298	487.2524393681499	26.448	1.1634	26.425	25.82	26.984	-0.023088					43	27	2	0	0	0	0.024294	1	1263	1263		45.952	0	1	803400	+		57576	28601	40281	40346	63000	63000					0.004300786605767826
PFEDTKVEI	9	Unmodified	_PFEDTKVEI_					0	0	0			REV__ENST00000472052.1_1_6:160197162-160199858:+|nuORF	REV__ENST00000472052.1_1_6:160197162-160199858:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2960815429688	2	539.276772	1076.53899	0.079013	4.261E-05	-4.002	-0.0021582	-3.923	-0.0021156	539.2756693097184	87.301	0.98721	87.322	86.886	87.873	0.021263					68	23	4	0	0	0	0.020937	1	10940	10940		110.12	30.669	1	472270	+		57577	22532	40282	40347	63001	63001					0.003783131409136331
PFEENEFIDA	10	Unmodified	_PFEENEFIDA_					0	0	0		nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2	nc|ENSG00000066032|P26232-4|CTNNA2	nc|ENSG00000066032|P26232-4|CTNNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5719299316406	3	404.180271	1209.51898	0.44583	0.00018019	-3.6713	-0.0014839	-3.2254	-0.0013037	404.17879429110906	43.007	0.79061	42.894	42.428	43.218	-0.11253					32	20	2	0	0	0	0.03519	1	3869	3869		40.058	19.221	1	241800			57578	1328	40283	40348	63002	63002					-0.07739482589704494
PFFEFVAL	8	Unmodified	_PFFEFVAL_					0	0	0		ENST00000500869.6_1_5:89812152-89812287:-|nuORF	ENST00000500869.6_1_5:89812152-89812287:-|nuORF	ENST00000500869.6_1_5:89812152-89812287:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.30816650390625	2	485.257654	968.500755	0.34662	0.0001682	-3.953	-0.0019182	-3.6064	-0.00175	485.25563273068	78.822	0.63678	78.666	78.383	79.02	-0.15591					22	14	2	0	0	0	0.027866	1	9376	9376		20.482	0	1	130740			57579	15651	40284	40349	63003	63003					0.015244720168993808
PFFKGPNLVV	10	Unmodified	_PFFKGPNLVV_					0	0	0			REV__ENST00000472842.1_1_11:13397253-13400122:+|nuORF	REV__ENST00000472842.1_1_11:13397253-13400122:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	559.3214111328125	2	559.32386	1116.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.479	1	67.479	66.979	67.979	0								0	0	0	0.762	1	8056	8056		49.442	6.5773	1		+		57580	33218	40285	40350	63004	63004					0.07951496753707943
PFFKGPNLVV	10	Unmodified	_PFFKGPNLVV_					0	0	0			REV__ENST00000472842.1_1_11:13397253-13400122:+|nuORF	REV__ENST00000472842.1_1_11:13397253-13400122:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	559.321533203125	2	559.32386	1116.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.91	1	67.622	67.122	68.122	-0.28834								0	0	0	0.76546	1	8087	8087		51.335	1.3109	1		+		57581	33218	40285	40350	63005	63005					0.07951496753707943
PFFMSLTRR	9	Unmodified	_PFFMSLTRR_					0	0	0			REV__ENSG00000120318|ENST00000239440|ARAP3	REV__ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.7703857421875	2	577.810593	1153.60663	0.2104	0.00012157	0.26632	0.00015389	0.47672	0.00027546	577.810624679086	51.731	0.1418	51.612	51.54	51.682	-0.11875					6	3	2	0	0	0	0.024447	1	5338	5338		32.812	0	1	114950	+		57582	22523	40286	40351	63006	63006					0.035974845907276176
PFGFICRFA	9	Unmodified	_PFGFICRFA_					0	0	0		ENST00000396004.2_1_12:25120063-25120186:-|nuORF	ENST00000396004.2_1_12:25120063-25120186:-|nuORF	ENST00000396004.2_1_12:25120063-25120186:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8074951171875	2	529.26803	1056.52151	-1.2067	-0.00063864	3.8384	0.0020315	2.6317	0.0013929	529.2699078026363	50.136	0.53323	50.136	49.878	50.411	0					34	15	3	0	0	0	0.024443	1	5189	5189		26.796	0	1	813350			57583	13538	40287	40352	63007	63007					-0.004492608750979343
PFGFPAQPPPP	11	Unmodified	_PFGFPAQPPPP_					0	0	0			REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2800903320312	2	576.297842	1150.58113	0.87366	0.00050349	-1.1116	-0.00064059	-0.2379	-0.0001371	576.297297569099	51.227	0.57828	51.116	50.823	51.401	-0.11163					24	13	2	0	0	0	0.024766	1	5210	5210		44.117	5.3107	1	132420	+		57584	25068	40288	40353	63008	63008					0.011863333399332987
PFGGRLLVL	9	Unmodified	_PFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.30535888671875	2	486.30547	970.596387	0.1609	7.8244E-05	-1.3711	-0.00066678	-1.2102	-0.00058853	486.30473320464193	73.114	0.8673	72.838	72.511	73.379	-0.27613					57	21	4	0	0	0	0.70186	1	8897	8897		45.952	3.4775	1	1708700			57585	1220	40289	40354	63009	63009					0.10991244927799926
PFGLPRVR	8	Unmodified	_PFGLPRVR_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2821960449219	2	471.287611	940.56067	0.59505	0.00028044	-1.2272	-0.00057834	-0.6321	-0.0002979	471.28672927572416	50.878	0.29793	50.767	50.488	50.786	-0.11163					11	7	2	0	0	0	0.027866	1	5162	5162		13.775	6.582	1	782010	+		57586	19377	40290	40355	63010	63010					0.08801207470799
PFGLSHHGNYV	11	Unmodified	_PFGLSHHGNYV_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.N2353Kfs*36|1|0.21|ENSG00000168702|chr2:140598766-140598767|-/T|frameshift_variant;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	614.3222045898438	2	614.298904	1226.58326	-0.030068	-1.8471E-05	-2.8395	-0.0017443	-2.8696	-0.0017628	614.7973464508291	68.353	0.39787	68.114	67.873	68.271	-0.23828					19	9	3	0	0	0	0.024762	1	7883	7883		24.519	0	1	116250			57587	7855;17923	40291	40356	63011	63011					-0.02097237922248496
PFGPFQPPP	9	Unmodified	_PFGPFQPPP_					0	0	0			REV__nc|ENSG00000119707|P49756-4|RBM25	REV__nc|ENSG00000119707|P49756-4|RBM25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.2797546386719	2	492.252903	982.491253	0.46376	0.00022829	4.2634	0.0020987	4.7271	0.0023269	492.25504522103955	72.202	0.45052	71.94	71.679	72.13	-0.26199					15	10	2	0	0	0	0.024443	1	8465	8465		26.796	3.7536	1	65533	+		57588	22480	40292	40357	63012	63012					-0.0006929626863438898
PFGPTHVN	8	Unmodified	_PFGPTHVN_					0	0	0		nc|ENSG00000172426|Q9H1X1-2|RSPH9;ENSG00000172426|ENST00000372163|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9;ENSG00000172426|ENST00000372163|RSPH9	nc|ENSG00000172426|Q9H1X1-2|RSPH9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7796325683594	2	434.719227	867.423902	-0.12493	-5.431E-05	0.30512	0.00013264	0.18019	7.833E-05	434.7192942908182	47.95	0.68588	48.017	47.903	48.588	0.066799					24	18	2	0	0	0	0.027866	1	4886	4886		25.45	0	1	182700			57589	18519;8275	40293	40358	63013	63013					-0.015113264795786563
PFGRPNGPR	9	Unmodified	_PFGRPNGPR_					0	0	0			REV__ENST00000398806.7_1_X:2746882-2761257:+|nuORF	REV__ENST00000398806.7_1_X:2746882-2761257:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2079162597656	2	499.26995	996.525347	-0.13178	-6.5794E-05	3.8261	0.0019103	3.6944	0.0018445	499.2730421886246	42.915	0.23748	42.802	42.654	42.891	-0.11253					8	5	2	0	0	0	0.024457	1	3896	3896		29.15	10.825	1	57351	+		57590	31808	40294	40359	63014	63014					0.02694544942983157
PFGRPNGPR	9	Unmodified	_PFGRPNGPR_					0	0	0			REV__ENST00000398806.7_1_X:2746882-2761257:+|nuORF	REV__ENST00000398806.7_1_X:2746882-2761257:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.26995	996.525347	-0.38774	-0.00019359	8.9457	0.0044663	8.5579	0.0042727	499.27418077139095	42.636	0.68875	42.404	42.234	42.923	-0.23186	-0.19935	0.0014891	NaN	29.15	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611680	+		57591	31808	40294	40359							0.02694544942983157
PFGSISRIYL	10	Unmodified	_PFGSISRIYL_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.822265625	2	576.824224	1151.63389	-0.66737	-0.00038495	0.2104	0.00012136	-0.45697	-0.00026359	576.8242355704784	66.551	1.1312	66.581	66.388	67.519	0.030106					49	28	3	0	0	0	0.94316	1	7845	7845		51.193	0	1	1013000			57592	4463	40295	40360	63015	63015					0.06414291402757044
PFGSISRIYL	10	Unmodified	_PFGSISRIYL_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.824224	1151.63389	-1.0461	-0.00060344	0.58958	0.00034008	-0.45656	-0.00026336	576.8245024433403	66.44	0.89665	66.44	66.348	67.245	0	-0.079723	0.00022661	NaN	51.193	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1351900			57593	4463	40295	40360							0.06414291402757044
PFGSISRIYL	10	Unmodified	_PFGSISRIYL_					0	0	0		ENSG00000130811|ENST00000253108|EIF3G;ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENSG00000130811|ENST00000253108|EIF3G	ENSG00000130811|ENST00000253108|EIF3G	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	576.824224	1151.63389	-0.5052	-0.00029141	0.3097	0.00017864	-0.19549	-0.00011276	576.8241265249072	66.819	0.93002	66.538	66.384	67.314	-0.28149	0.018367	-9.6272E-05	NaN	51.193	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266500			57594	4463	40295	40360							0.06414291402757044
PFGWRWKDI	9	Unmodified	_PFGWRWKDI_					0	0	0			REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF	REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5574035644531	3	402.213581	1203.61891	0.12772	5.1372E-05	4.3624	0.0017546	4.4901	0.001806	402.2141563008646	61.206	1.3246	61.029	60.443	61.768	-0.1761					44	32	3	0	0	0	0.024436	1	6904	6904		17.468	4.5105	1	278730	+		57595	30510	40296	40361	63016	63016					0.02524844325421327
PFHKALFS	8	Unmodified	_PFHKALFS_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL;nc|ENSG00000147485|A1KZ92-3|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.75567626953125	2	473.760895	945.507237	0.065864	3.1204E-05	-4.1913	-0.0019857	-4.1254	-0.0019544	473.7588587129943	70.352	0.16043	70.095	69.976	70.137	-0.25712					5	3	2	0	0	0	0.027866	1	8191	8191		25.45	0	1	68218			57596	5972	40297	40362	63017	63017					0.032304099682846754
PFHKVTVQ	8	Unmodified	_PFHKVTVQ_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2347412109375	2	478.271627	954.528701	-0.61731	-0.00029524	-2.566	-0.0012272	-3.1833	-0.0015225	478.2697796853849	39.482	0.78994	39.383	39.091	39.88	-0.098751					48	21	3	0	0	0	0.027866	1	3454	3454		31.955	16.313	1	964740			57597	9145	40298	40363	63018	63018					0.0496179499699565
PFHKVTVQ	8	Unmodified	_PFHKVTVQ_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.271627	954.528701	0.83653	0.00040009	-3.4528	-0.0016514	-2.6163	-0.0012513	478.2691119185335	39.432	0.69602	39.432	39.183	39.879	0	-0.048094	-0.00046832	NaN	17.365	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124400			57598	9145	40298	40363							0.0496179499699565
PFHKVTVQ	8	Unmodified	_PFHKVTVQ_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.271627	954.528701	-0.73048	-0.00034937	-2.9817	-0.0014261	-3.7122	-0.0017754	478.26981681824486	39.601	0.66472	39.624	39.349	40.014	0.023727	0.14487	-1.7645E-05	NaN	17.365	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	918660			57599	9145	40298	40363							0.0496179499699565
PFHLTSVFL	9	Unmodified	_PFHLTSVFL_					0	0	0			REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.7986450195312	2	530.794935	1059.57532	0.057049	3.0281E-05	0.23113	0.00012268	0.28818	0.00015297	530.794873274886	95.825	1.2816	95.688	95.331	96.612	-0.13689					72	28	3	0	0	0	0.40179	2	11819	11819;11830		65.803	5.5293	1	811310	+		57600	23684	40299	40364	63019;63020	63019					0.047912348282807216
PFHLTSVFL	9	Unmodified	_PFHLTSVFL_					0	0	0			REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.79931640625	2	530.794935	1059.57532	0.25096	0.00013321	-0.20456	-0.00010858	0.046403	2.4631E-05	530.7946318063322	95.793	1.6839	95.67	95.291	96.974	-0.12251					88	36	3	0	0	0	0.36105	2	11830	11830;11857		68.485	17.693	1	952940	+		57601	23684	40299	40364	63021;63022	63021					0.047912348282807216
PFHLTSVFL	9	Unmodified	_PFHLTSVFL_					0	0	0			REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.7960815429688	2	530.794935	1059.57532	-0.34557	-0.00018342	0.3316	0.00017601	-0.013967	-7.4137E-06	530.7949316671137	95.904	1.5554	95.747	95.4	96.955	-0.15646					84	35	3	0	0	0	0.29104	1	11841	11841		76.847	21.342	1	903670	+		57602	23684	40299	40364	63023	63023					0.047912348282807216
PFHLTSVFL	9	Unmodified	_PFHLTSVFL_					0	0	0			REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	REV__TOR1B|p.H147Y|1|0.23|ENSG00000136816|chr9:129804312-129804312|C/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	530.794935	1059.57532	0.057049	3.0281E-05	0.23113	0.00012268	0.28818	0.00015297	530.794873274886	95.825	1.2816	95.688	95.331	96.612	-0.13689	-0.013854	0.00011885	NaN	76.847	72	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811310	+		57603	23684	40299	40364							0.047912348282807216
PFHPRSLAR	9	Unmodified	_PFHPRSLAR_					0	0	0			REV__ENST00000455843.5_1_22:19705679-19706159:+|nuORF	REV__ENST00000455843.5_1_22:19705679-19706159:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3318481445312	2	540.8067	1079.59885	-0.48251	-0.00026095	-1.9796	-0.0010706	-2.4621	-0.0013315	540.8054683885969	67.559	0.50736	67.583	67.389	67.897	0.023903					24	11	3	0	0	0	0.024344	1	7958	7958		37.812	0	1	471600	+		57604	32788	40300	40365	63024	63024					0.06223093385460743
PFHYGGFPS	9	Unmodified	_PFHYGGFPS_					0	0	0		nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	nc|ENSG00000182022|Q7LFX5-2|CHST15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7667236328125	2	504.732335	1007.45012	-0.19738	-9.9622E-05	0.80049	0.00040403	0.60311	0.00030441	504.73372131141684	63.6	0.49084	63.408	63.186	63.677	-0.19243					15	12	2	0	0	0	0.024466	1	7164	7164		33.516	20.556	1	127330			57605	9092	40301	40366	63025	63025					-0.05331057308092113
PFIFPYKQP	9	Unmodified	_PFIFPYKQP_					0	0	0			REV__ENST00000517413.5_1_8:17503437-17511044:-|nuORF	REV__ENST00000517413.5_1_8:17503437-17511044:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.829345703125	2	568.810585	1135.60662	-0.499	-0.00028384	-3.3456	-0.001903	-3.8446	-0.0021869	568.8084589193819	64.925	0.55502	64.67	64.386	64.941	-0.25563					25	13	3	0	0	0	0.024466	1	7416	7416		25.45	0	1	245230	+		57606	34214	40303	40367	63026	63026					0.04423807862372087
PFIGQVKF	8	Unmodified	_PFIGQVKF_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.73883056640625	2	468.271096	934.527639	-0.49949	-0.00023389	0.80337	0.00037619	0.30388	0.0001423	468.2708932900518	25.931	0.92973	25.695	25.302	26.232	-0.23603					51	24	4	0	0	0	0.027866	1	1370	1370		44.531	7.5026	1	169250	+		57607	27146	40304	40368	63027	63027					0.05775580628096577
PFIPKSFNY	9	Unmodified	_PFIPKSFNY_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3077392578125	2	556.792392	1111.57023	-0.86291	-0.00048046	-1.815	-0.0010106	-2.678	-0.0014911	556.7909091873543	61.401	1.0877	61.225	60.955	62.043	-0.1761					39	26	2	0	0	0	0.024535	1	6851	6851		18.324	0	1	110190			57608	7039	40305	40369	63028	63028					0.01890930965669213
PFISATPSSL	10	Unmodified	_PFISATPSSL_					0	0	0		ENST00000563965.5_1_15:74494952-74495144:-|nuORF	ENST00000563965.5_1_15:74494952-74495144:-|nuORF	ENST00000563965.5_1_15:74494952-74495144:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7870788574219	2	510.274032	1018.53351	-0.40857	-0.00020848	0.2969	0.0001515	-0.11168	-5.6986E-05	510.2740737260763	60.136	0.74796	59.935	59.538	60.286	-0.20016					23	19	2	0	0	0	0.03519	1	6916	6916		42.396	0	1	84891			57609	16878	40306	40370	63029	63029					0.02498634349092299
PFITKTKSN	9	Unmodified	_PFITKTKSN_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MSMS	OPSCC_39_ClassI_Rep-2	2	518.2966918945312	2	518.295299	1034.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.66	1	100.67	100.17	101.17	0.010117								0	0	0	0.51283	1	12844	12844		51.193	7.0759	1		+		57610	23664	40307	40371	63030	63030					0.060140294773418645
PFITKTKSN	9	Unmodified	_PFITKTKSN_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MSMS	OPSCC_39_ClassI_Rep-2	2	518.2965087890625	2	518.295299	1034.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.7	1	100.71	100.21	101.21	0.0093689								0	0	0	0.3606	1	12849	12849		64.207	0.901	1		+		57611	23664	40307	40371	63031	63031					0.060140294773418645
PFIYGNLSQG	10	Unmodified	_PFIYGNLSQG_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2515869140625	2	548.277106	1094.53966	-0.59271	-0.00032497	-3.7806	-0.0020728	-4.3733	-0.0023978	548.2746689749208	52.256	1.5679	52.256	51.836	53.404	0					94	41	4	0	0	0	0.03519	1	5585	5585		23.523	0	1	1580500			57612	5030	40308	40372	63032	63032					-0.0038284741938241496
PFKAKVTGQ	9	Unmodified	_PFKAKVTGQ_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000484981.1_1_3:58151207-58156486:+|nuORF	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.26165771484375	2	488.284734	974.554916	0.49747	0.00024291	-4.4242	-0.0021603	-3.9268	-0.0019174	488.2823457585627	77.038	0.42406	76.786	76.399	76.823	-0.25162					12	9	2	0	0	0	0.024506	1	9168	9168		16.473	0	1	64998			57613	4979	40309	40373	63033	63033					0.0666206416847217
PFKIFIFILN	10	Unmodified	_PFKIFIFILN_					0	0	0		ENST00000429861.5_1_8:61471430-61504606:+|nuORF	ENST00000429861.5_1_8:61471430-61504606:+|nuORF	ENST00000429861.5_1_8:61471430-61504606:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.92218017578125	3	417.921515	1250.74272	-0.52093	-0.00021771	2.1268	0.00088882	1.6058	0.00067112	417.92234284663687	104.49	1.049	104.36	104.02	105.07	-0.12927					86	34	4	0	0	0	1.1211	1	13001	13001		21.686	0.8486	1	1360400			57614	14158	40310	40374	63034	63034					0.1273750237303375
PFKLIKVY	8	Unmodified	_PFKLIKVY_					0	0	0			REV__ENST00000542527.6_1_16:22092763-22092889:+|nuORF	REV__ENST00000542527.6_1_16:22092763-22092889:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.29736328125	2	504.318046	1006.62154	3.5134	0.0017719	1.1881	0.00059918	4.7015	0.002371	504.3194874835737	18.854	0.34337	18.917	18.698	19.041	0.063307					8	6	2	0	0	0	0.027866	1	276	276		20.482	11.011	1	14804	+		57615	34794	40311	40375	63035	63035					0.11849299730363327
PFKLKPSVE	9	Unmodified	_PFKLKPSVE_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7988891601562	2	522.808042	1043.60153	0.16813	8.7899E-05	1.2474	0.00065215	1.4155	0.00074005	523.310852136648	71.376	0.49834	71.114	70.824	71.322	-0.262					15	11	2	0	0	0	0.024487	1	8335	8335		17.365	0	1	156570			57616	3272	40312	40376	63036	63036					0.08147503999748551
PFKSLRNL	8	Unmodified	_PFKSLRNL_					0	0	0		ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.77105712890625	2	487.792727	973.5709	-0.40944	-0.00019972	-2.4928	-0.001216	-2.9023	-0.0014157	487.79166321938163	79.906	0.79926	79.906	79.616	80.415	0					35	18	3	0	0	0	0.027866	1	9899	9899		17.365	0	1	273060			57617	5999	40313	40377	63037	63037					0.08305770405377189
PFLAGVHLG	9	Unmodified	_PFLAGVHLG_					0	0	0			REV__ENSG00000124215|ENST00000348616|CDH26	REV__ENSG00000124215|ENST00000348616|CDH26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.24627685546875	2	455.760895	909.507237	0.044118	2.0107E-05	-2.5323	-0.0011541	-2.4882	-0.001134	455.7605528978805	41.936	0.20836	41.813	41.752	41.961	-0.12299					6	5	2	0	0	0	0.024389	1	3751	3751		39.021	27.51	1	44797	+		57618	22750	40314	40378	63038	63038					0.04886409968287353
PFLAYKTL	8	Unmodified	_PFLAYKTL_					0	0	0		ENST00000373670.5_1_9:125659820-125659901:-|nuORF	ENST00000373670.5_1_9:125659820-125659901:-|nuORF	ENST00000373670.5_1_9:125659820-125659901:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.26080322265625	2	476.778754	951.542954	-0.74196	-0.00035375	2.5077	0.0011956	1.7658	0.00084188	476.7796445786641	28.077	0.36449	27.908	27.807	28.171	-0.16897					15	8	3	0	0	0	0.027866	1	1641	1641		16.473	1.809	1	183900			57619	13083	40315	40379	63039	63039					0.06524447425283597
PFLDEILSL	9	Unmodified	_PFLDEILSL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2927856445312	2	523.792058	1045.56956	-1.4367	-0.00075256	0.74257	0.00038895	-0.69417	-0.0003636	523.7924359763991	51.841	0.68136	51.572	50.974	51.656	-0.26904					25	17	2	0	0	0	0.023596	1	5345	5345		85.359	7.4156	1	3235100	+		57620	20082	40316	40380	63040	63040					0.04860091525961252
PFLEDSLVKV	10	Unmodified	_PFLEDSLVKV_					0	0	0		ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	ENST00000209929.9_1_1:171154426-171178089:+|nuORF	ENST00000209929.9_1_1:171154426-171178089:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	573.8232421875	2	573.823889	1145.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.2	1	105.08	104.58	105.58	-0.12444								0	0	0	0.4525	1	13094	13094		69.628	14.851	1				57621	2012	40317	40381	63041	63041					0.06623451963037041
PFLEIEPIS	9	Unmodified	_PFLEIEPIS_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	522.784233	1043.55391	0.16465	8.6075E-05	3.9023	0.0020401	4.067	0.0021262	523.2862539100806	88.044	0.44446	87.906	87.746	88.19	-0.13744					14	10	2	0	0	0	0.024381	1	10741	10741		21.96	0	1	79748	+		57622	20649	40318	40382	63042	63042					0.03387805008901523
PFLGNIYG	8	Unmodified	_PFLGNIYG_					0	0	0			REV__nc|ENSG00000170469|Q86W54-2|SPATA24	REV__nc|ENSG00000170469|Q86W54-2|SPATA24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2275695800781	2	440.731803	879.449054	-0.63503	-0.00027988	-3.6506	-0.0016089	-4.2856	-0.0018888	440.73003045350794	34.325	1.1316	34.376	33.925	35.056	0.050255					53	28	3	0	0	0	0.027866	1	2560	2560		35.201	1.6851	1	1727500	+		57623	36921	40319	40383	63043	63043					0.004507283229941095
PFLIIAPLSTI	11	Unmodified	_PFLIIAPLSTI_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000124177|Q8TD26-3|CHD6;nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF	ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	592.8675537109375	2	592.8681	1183.72165	-0.89357	-0.00052977	1.4562	0.00086331	0.56259	0.00033354	592.8687996697352	102.66	1.1608	102.67	102.28	103.44	0.0065231					72	27	5	0	0	0	0.93615	1	13152	13152		49.442	7.0454	1	2942200			57624	18544;4017	40320	40384	63044	63044					0.1371349227349583
PFLIRLFW	8	Unmodified	_PFLIRLFW_					0	0	0		nc|ENSG00000293442|O43930|PRKY;ENST00000528056.5_1_Y:7142320-7235412:+|nuORF;ENSG00000183943|ENST00000262848|PRKX	nc|ENSG00000293442|O43930|PRKY	nc|ENSG00000293442|O43930|PRKY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.805908203125	2	546.323663	1090.63277	-0.063875	-3.4897E-05	4.2637	0.0023294	4.1998	0.0022945	546.3261423591562	72.659	0.59723	72.394	72.127	72.724	-0.26479					15	13	2	0	0	0	0.027866	1	8558	8558		44.531	0	1	84042			57625	9293	40321	40385	63045	63045					0.09108121824533555
PFLKILLCS	9	Unmodified	_PFLKILLCS_					0	0	0		ENST00000491554.6_1_15:40716399-40727929:+|nuORF;ENST00000481262.6_1_15:40705272-40727929:+|nuORF	ENST00000491554.6_1_15:40716399-40727929:+|nuORF	ENST00000491554.6_1_15:40716399-40727929:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2971801757812	2	517.309364	1032.60417	0.20059	0.00010377	1.9302	0.00099849	2.1308	0.0011023	517.3088399579952	102.61	0.47856	102.48	102.23	102.71	-0.1293					23	10	4	0	0	0	0.024466	1	12754	12754		18.324	0	1	95904			57626	15223	40322	40386	63046	63046					0.08917636133060114
PFLLFILCC	9	Unmodified	_PFLLFILCC_					0	0	0			REV__ENST00000463593.6_1_9:95060120-95060712:-|nuORF	REV__ENST00000463593.6_1_9:95060120-95060712:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2838134765625	2	534.784667	1067.55478	-1.6532	-0.00088411	3.9443	0.0021094	2.2911	0.0012253	535.2885256970054	111.08	0.19588	110.94	110.8	111	-0.14127					12	8	2	0	0	0	0.024541	1	13578	13578		21.702	8.7432	1	320370	+		57627	32941	40323	40387	63047	63047					0.023706048526037193
PFLLFILCC	9	Unmodified	_PFLLFILCC_					0	0	0			REV__ENST00000463593.6_1_9:95060120-95060712:-|nuORF	REV__ENST00000463593.6_1_9:95060120-95060712:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.784667	1067.55478	0.14406	7.7043E-05	2.38	0.0012728	2.524	0.0013498	535.2877336325299	111.04	0.069511	110.9	110.84	110.91	-0.1469	-0.023397	-0.00086494	NaN	21.702	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14017	+		57628	32941	40323	40387							0.023706048526037193
PFLLGDLSI	9	Unmodified	_PFLLGDLSI_					0	0	0			REV__ENSG00000082175|ENST00000325455|PGR	REV__ENSG00000082175|ENST00000325455|PGR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7828369140625	2	487.781493	973.548434	0.01594	7.7752E-06	3.5075	0.0017109	3.5234	0.0017187	487.7830837717309	88.943	1.5037	88.958	87.753	89.257	0.015907					55	35	2	0	0	0	0.43973	1	11144	11144		63.306	7.8021	1	649670	+		57629	20690	40324	40388	63048	63048					0.06060126217107609
PFLLGPQFSL	10	Unmodified	_PFLLGPQFSL_					0	0	0		ENST00000564774.5_1_16:84212549-84214094:-|nuORF	ENST00000564774.5_1_16:84212549-84214094:-|nuORF	ENST00000564774.5_1_16:84212549-84214094:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8150634765625	2	559.815867	1117.61718	-0.92953	-0.00052036	0.35389	0.00019811	-0.57564	-0.00032225	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.77808	1	10119	10119		62.107	4.2961	1	11139000			57630	16903	40325	40389	63049	63049					0.06307790516802925
PFLLGRAL	8	Unmodified	_PFLLGRAL_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.7793884277344	2	443.779088	885.543623	-0.41261	-0.00018311	0.59273	0.00026304	0.18012	7.9933E-05	443.7792388490553	74.008	1.0612	74.017	73.793	74.854	0.0096588					46	24	2	0	0	0	0.85409	1	8978	8978		54.765	0	1	2153000			57631	10173	40326	40390	63050	63050					0.09627286864997586
PFLLHFFFP	9	Unmodified	_PFLLHFFFP_					0	0	0			REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.7772216796875	2	582.81567	1163.61679	-0.13501	-7.8686E-05	-0.0043646	-2.5438E-06	-0.13937	-8.123E-05	582.8149982166724	63.184	0.56361	62.963	62.734	63.297	-0.22097					21	13	3	0	0	0	0.024389	1	7118	7118		39.021	17.319	1	218020	+		57632	29536	40327	40391	63051	63051					0.04152415587600444
PFLLHGEGAKV	11	Unmodified	_PFLLHGEGAKV_					0	0	0			REV__ENST00000310430.10_1_8:9634936-9635083:+|nuORF	REV__ENST00000310430.10_1_8:9634936-9635083:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.7775268554688	2	584.329673	1166.64479	-0.22754	-0.00013296	-0.7712	-0.00045064	-0.99874	-0.00058359	584.3291753453474	63.433	0.3535	63.175	62.96	63.313	-0.25824					15	8	2	0	0	0	0.024749	1	7133	7133		23.042	9.5884	1	151530	+		57633	30183	40328	40392	63052	63052					0.06813693777030494
PFLLHGEGAKV	11	Unmodified	_PFLLHGEGAKV_					0	0	0			REV__ENST00000310430.10_1_8:9634936-9635083:+|nuORF	REV__ENST00000310430.10_1_8:9634936-9635083:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	584.329673	1166.64479	-0.23856	-0.0001394	-0.80433	-0.00046999	-1.0429	-0.00060939	584.3290510433875	63.396	0.31279	63.169	63.015	63.328	-0.22773	-0.019777	6.4963E-05	NaN	26.693	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174830	+		57634	30183	40328	40392							0.06813693777030494
PFLLILVCTAP	11	Unmodified	_PFLLILVCTAP_					0	0	0		ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8018188476562	2	593.848853	1185.68315	-0.75947	-0.00045101	2.3102	0.0013719	1.5508	0.00092093	593.8494709673665	35.91	0.36687	35.694	35.614	35.981	-0.21661					13	10	2	0	0	0	0.024792	1	2769	2769		35.618	0	1	249170			57635	10735	40329	40393	63053	63053					0.09773863367331614
PFLLLGLVPE	10	Unmodified	_PFLLLGLVPE_					0	0	0		nc|ENSG00000090905|Q8NDV7-5|TNRC6A	nc|ENSG00000090905|Q8NDV7-5|TNRC6A	nc|ENSG00000090905|Q8NDV7-5|TNRC6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.300537109375	2	549.333893	1096.65323	0.12329	6.7729E-05	-4.2181	-0.0023171	-4.0948	-0.0022494	549.331371390034	85.783	0.42454	85.588	85.427	85.851	-0.19508					16	9	3	0	0	0	0.03519	1	10379	10379		24.203	0	1	111280			57636	18109	40330	40394	63054	63054					0.108772476936565
PFLLNIKIP	9	Unmodified	_PFLLNIKIP_					0	0	0			REV__ENST00000397310.6_1_14:23596388-23599053:-|nuORF	REV__ENST00000397310.6_1_14:23596388-23599053:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2391357421875	2	527.836603	1053.65865	-0.21632	-0.00011418	-3.6623	-0.0019331	-3.8786	-0.0020473	527.8345324873228	63.605	0.54035	63.353	63.084	63.624	-0.25141					35	14	3	0	0	0	0.024381	1	7417	7417		45.952	12.436	1	653800	+		57637	20923	40331	40395	63055	63055					0.13396971276119984
PFLLSRRR	8	Unmodified	_PFLLSRRR_					0	0	0		ENST00000582381.1_1_17:26902477-26903832:-|nuORF;ENST00000584086.5_1_17:26902477-26903857:-|nuORF;ENST00000395321.6_1_17:26902480-26903932:-|nuORF	ENST00000582381.1_1_17:26902477-26903832:-|nuORF	ENST00000582381.1_1_17:26902477-26903832:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.263916015625	2	522.824892	1043.63523	0.1191	6.2269E-05	-1.9199	-0.0010038	-1.8008	-0.00094152	522.8237295744302	54.531	0.64331	54.286	53.98	54.623	-0.2453					41	18	3	0	0	0	0.027866	1	5779	5779		47.916	0	1	1758400			57638	13513	40332	40396	63056	63056					0.11515970282175658
PFLPLLLV	8	Unmodified	_PFLPLLLV_					0	0	0		ENST00000478932.1_1_21:17250099-17250791:+|nuORF;nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25	ENST00000478932.1_1_21:17250099-17250791:+|nuORF	ENST00000478932.1_1_21:17250099-17250791:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.77862548828125	2	456.301865	910.589176	0.64566	0.00029462	-2.1833	-0.00099624	-1.5376	-0.00070162	456.3007006056193	41.861	2.143	41.861	41.153	43.296	0					114	60	3	0	0	0	0.027866	1	3982	3982		24.504	0	1	493150			57639	6467	40333	40397	63057	63057					0.1303051232737289
PFLPLLLV	8	Unmodified	_PFLPLLLV_					0	0	0		ENST00000478932.1_1_21:17250099-17250791:+|nuORF;nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25	ENST00000478932.1_1_21:17250099-17250791:+|nuORF	ENST00000478932.1_1_21:17250099-17250791:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	456.301865	910.589176	0.015172	6.9228E-06	-1.1742	-0.00053578	-1.159	-0.00052885	456.301112196345	42.227	1.2505	42.095	41.565	42.816	-0.13219	0.14334	0.00035108	NaN	24.504	74	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469150			57640	6467	40333	40397							0.1303051232737289
PFLPYETL	8	Unmodified	_PFLPYETL_					0	0	0			REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|33	REV__chr5:90929313-90965415|334|14.64|0.23|5.99|+|1|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2764892578125	2	490.260394	978.506234	-0.98654	-0.00048366	0.63458	0.00031111	-0.35196	-0.00017255	490.26060112613646	64.65	0.79164	64.387	64.119	64.911	-0.2626					54	20	4	0	0	0	0.027866	1	7617	7617		42.474	0	1	684310	+		57641	19451	40334	40398	63058	63058					0.016121508087167058
PFLQSRLN	8	Unmodified	_PFLQSRLN_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.77239990234375	2	487.774534	973.534515	-0.30594	-0.00014923	-0.26967	-0.00013154	-0.5756	-0.00028077	487.7743254816327	85.655	0.45175	85.597	85.355	85.807	-0.057617					28	10	3	0	0	0	0.53523	1	10735	10735		82.305	0	1	2297300	+		57642	22148	40335	40399	63059	63059					0.04668893508664951
PFLSRLLP	8	Unmodified	_PFLSRLLP_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8087158203125	2	471.792195	941.569838	0.13496	6.3673E-05	1.5387	0.00072594	1.6736	0.00078961	471.79327063894146	40.857	0.16853	40.88	40.73	40.899	0.023006					6	4	2	0	0	0	0.027866	1	3562	3562		63.306	13.865	1	57185	+		57643	26069	40336	40400	63060	63060					0.09671556036471429
PFLSVPETHE	10	Unmodified	_PFLSVPETHE_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.3058471679688	2	578.287671	1154.56079	0.075202	4.3488E-05	-0.67661	-0.00039128	-0.60141	-0.00034779	578.287685250468	75.795	0.25691	75.806	75.681	75.938	0.011635					11	6	2	0	0	0	0.03519	1	9228	9228		30.504	2.4222	1	969180	+		57644	20079	40337	40401	63061	63061					-0.010308821105354582
PFLVLLLP	8	Unmodified	_PFLVLLLP_					0	0	0		ENST00000453514.5_1_5:78908374-78908419:+|nuORF	ENST00000453514.5_1_5:78908374-78908419:+|nuORF	ENST00000453514.5_1_5:78908374-78908419:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.24609375	2	456.301865	910.589176	-0.19226	-8.7727E-05	-1.4576	-0.00066512	-1.6499	-0.00075284	456.30103122878484	42.164	1.2196	41.934	41.688	42.908	-0.2303					70	32	3	0	0	0	0.027866	1	3786	3786		33.493	2.9893	1	652870			57645	14550	40338	40402	63062	63062					0.13030512327384258
PFLVRYAKT	9	Unmodified	_PFLVRYAKT_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8099975585938	2	547.821484	1093.62842	-0.55542	-0.00030427	-1.4582	-0.00079885	-2.0137	-0.0011031	547.8203248384318	54.481	0.24512	54.331	54.229	54.474	-0.15036					8	6	2	0	0	0	0.024447	1	5915	5915		40.778	17.255	1	88504			57646	953	40339	40403	63063	63063					0.08534612610924341
PFLWLQAGP	9	Unmodified	_PFLWLQAGP_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8175048828125	2	514.781828	1027.5491	0.19112	9.8387E-05	-3.7729	-0.0019422	-3.5818	-0.0018439	514.7797534167755	73.15	0.81297	72.879	72.354	73.167	-0.27126					41	19	3	0	0	0	0.024325	1	8846	8846		40.573	0	1	702690	+		57647	23875	40340	40404	63064	63064					0.03642965656808883
PFLYGCVVL	9	Unmodified	_PFLYGCVVL_					0	0	0			REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.29296875	2	505.772614	1009.53067	-1.2684	-0.00064154	-2.4369	-0.0012325	-3.7053	-0.0018741	505.7712223496837	44.678	0.44197	44.529	44.288	44.73	-0.1488					21	12	2	0	0	0	0.024475	1	4256	4256		21.702	0	1	249730	+		57648	31540	40341	40405	63065	63065					0.026290876905932237
PFLYGIIF	8	Unmodified	_PFLYGIIF_					0	0	0			REV__ENSG00000183671|ENST00000621141|CMKLR2	REV__ENSG00000183671|ENST00000621141|CMKLR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7920837402344	2	485.275847	968.537141	-1.0833	-0.00052568	-2.6145	-0.0012687	-3.6977	-0.0017944	485.2742033414285	79.565	0.626	79.393	79.069	79.695	-0.17226					24	14	2	0	0	0	0.027866	1	9833	9833		24.504	8.8622	1	156020	+		57649	27596	40342	40406	63066	63066					0.05161348913634356
PFMQMPQYQ	9	Unmodified	_PFMQMPQYQ_					0	0	0		nc|ENSG00000113303|Q6UX41-2|BTNL8;nc|ENSG00000113303|Q6UX41-3|BTNL8;nc|ENSG00000113303|Q6UX41-5|BTNL8;ENSG00000113303|ENST00000340184|BTNL8	nc|ENSG00000113303|Q6UX41-2|BTNL8;ENSG00000113303|ENST00000340184|BTNL8	nc|ENSG00000113303|Q6UX41-2|BTNL8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.802490234375	2	585.259545	1168.50454	-0.9207	-0.00053885	-1.682	-0.00098439	-2.6027	-0.0015232	585.259068436231	53.711	0.21513	53.466	53.275	53.49	-0.2453					8	5	2	0	0	0	0.024535	1	5609	5609		18.324	0	1	148070			57650	18182;3279	40343	40407	63067	63067					-0.07297549543181958
PFNPLLGET	9	Unmodified	_PFNPLLGET_					0	0	0		ENSG00000110048|ENST00000263847|OSBP;ENST00000528903.1_1_11:59361446-59368013:-|nuORF;nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant;ENSG00000141447|ENST00000319481|OSBPL1A;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.30517578125	2	494.260925	986.507297	0.48845	0.00024142	1.8542	0.00091645	2.3426	0.0011579	494.26184714028415	71.719	0.52753	71.43	71.234	71.761	-0.28858					29	13	3	0	0	0	0.024323	1	8705	8705		27.882	0	1	343900			57651	4442;3016	40344	40408	63068	63068					0.01350365177609092
PFPAGAQLSL	10	Unmodified	_PFPAGAQLSL_					0	0	0		nc|ENSG00000293328|Q8N9T2|NKAPP1	nc|ENSG00000293328|Q8N9T2|NKAPP1	nc|ENSG00000293328|Q8N9T2|NKAPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2864990234375	2	500.776742	999.538931	-0.24593	-0.00012316	-4.4116	-0.0022092	-4.6575	-0.0023324	500.77457043781124	45.301	1.1934	45.301	44.97	46.163	0					70	34	5	0	0	0	0.03519	1	4348	4348		45.952	0	1	3375700			57652	18843	40345	40409	63069	63069					0.03914357931569157
PFPARTLQG	9	Unmodified	_PFPARTLQG_					0	0	0			REV__ENST00000562204.1_1_16:89178629-89212354:+|nuORF	REV__ENST00000562204.1_1_16:89178629-89212354:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30718994140625	2	493.774534	985.534515	0.30758	0.00015188	-1.6558	-0.0008176	-1.3482	-0.00066572	493.77356190973177	100.85	0.46149	100.85	100.62	101.08	0					18	10	2	0	0	0	0.024292	1	12913	12913		40.778	1.7567	1	121170	+		57653	35190	40346	40410	63070	63070					0.04116893508660269
PFPEATGR	8	Unmodified	_PFPEATGR_					0	0	0			REV__nc|ENSG00000174015|Q8NA61-2|CBY2	REV__nc|ENSG00000174015|Q8NA61-2|CBY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.58544921875	2	437.72451	873.434466	-0.10539	-4.6133E-05	0.049705	2.1757E-05	-0.055687	-2.4376E-05	437.7243060024163	33.145	0.44046	32.944	32.73	33.171	-0.20019					15	10	2	0	0	0	0.027866	1	2334	2334		9.7057	0	1	56484	+		57654	26829	40347	40411	63071	63071					-0.0073134382514581375
PFPGGPLQV	9	Unmodified	_PFPGGPLQV_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.77862548828125	2	456.252903	910.491253	0.31893	0.00014551	-2.9729	-0.0013564	-2.654	-0.0012109	456.2507483931611	42.837	0.92847	42.837	42.222	43.15	0					81	25	5	0	0	0	0.024325	1	3982	3982		50.025	12.865	1	2814500			57655	6186	40348	40412	63072	63072					0.03242703731370966
PFPIVDKIN	9	Unmodified	_PFPIVDKIN_					0	0	0			REV__nc|ENSG00000137513|Q96I59-2|NARS2	REV__nc|ENSG00000137513|Q96I59-2|NARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.79736328125	2	521.800217	1041.58588	-0.81664	-0.00042612	-3.3743	-0.0017607	-4.1909	-0.0021868	521.7983586383364	56.56	0.86919	56.56	56.241	57.111	0					40	24	3	0	0	0	0.33245	1	6315	6315		71.296	7.7619	1	3353900	+		57656	23766	40349	40413	63073	63073					0.0667521748271156
PFPMPQPIP	9	Unmodified	_PFPMPQPIP_					0	0	0			REV__ENSG00000081026|ENST00000307546|MAGI3	REV__ENSG00000081026|ENST00000307546|MAGI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2689208984375	2	512.270238	1022.52592	0.46008	0.00023569	2.2698	0.0011628	2.7299	0.0013985	512.2712408620386	79.948	0.37552	79.701	79.447	79.822	-0.2465					13	8	2	0	0	0	0.024412	1	9550	9550		31.955	0	1	49123	+		57657	20671	40350	40414	63074	63074					0.015562035478183134
PFPNKDSQL	9	Unmodified	_PFPNKDSQL_					0	0	0		nc|ENSG00000144218|P51826-2|AFF3;ENSG00000144218|ENST00000672756|AFF3	nc|ENSG00000144218|P51826-2|AFF3	nc|ENSG00000144218|P51826-2|AFF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2971801757812	2	523.269281	1044.52401	-0.81414	-0.00042602	0.64145	0.00033565	-0.1727	-9.0367E-05	523.270828883974	51.805	0.2664	51.658	51.511	51.777	-0.14735					9	7	2	0	0	0	0.024292	1	5498	5498		49.442	0	1	95211			57658	18354	40351	40415	63075	63075					0.0035286606357658457
PFPPYLFLR	9	Unmodified	_PFPPYLFLR_					0	0	0		ENST00000591087.1_1_19:46144824-46145007:+|nuORF	ENST00000591087.1_1_19:46144824-46145007:+|nuORF	ENST00000591087.1_1_19:46144824-46145007:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.3084106445312	2	575.326402	1148.63825	-0.76616	-0.00044079	-3.5015	-0.0020145	-4.2676	-0.0024553	575.3242643885242	73.412	1.4198	73.422	73.145	74.565	0.0096512					44	34	2	0	0	0	0.024535	1	9048	9048		25.45	0	1	1494400			57659	17345	40352	40416	63076	63076					0.06987800616298045
PFPRLHNL	8	Unmodified	_PFPRLHNL_					0	0	0		nc|ENSG00000174015|Q8NA61-2|CBY2;ENSG00000174015|ENST00000310521|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	nc|ENSG00000174015|Q8NA61-2|CBY2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2843322753906	2	497.285069	992.555585	-0.27321	-0.00013586	-1.9413	-0.00096538	-2.2145	-0.0011012	497.2839926325667	63.154	0.93897	62.97	62.671	63.61	-0.18386					50	23	3	0	0	0	0.85409	1	7122	7122		54.765	2.4655	1	1119700			57660	8435	40353	40417	63077	63077					0.05900903608164754
PFPSPANVP	9	Unmodified	_PFPSPANVP_					0	0	0		MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|29|3|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|29|3|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|29|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.2822570800781	2	463.242535	924.470518	-0.35353	-0.00016377	-2.1957	-0.0010172	-2.5493	-0.0011809	463.2414690507279	76.954	0.25106	76.786	76.567	76.818	-0.16853					6	5	2	0	0	0	0.024412	1	9120	9120		40.573	31.39	1	95308			57661	17983	40354	40418	63078	63078					0.0052611335171377505
PFPSRSEWDTE	11	Unmodified	_PFPSRSEWDTE_					0	0	0			REV__ENST00000558627.1_1_15:80464506-80464578:+|nuORF	REV__ENST00000558627.1_1_15:80464506-80464578:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7845764160156	3	450.870208	1349.58879	0.026641	1.2012E-05	-0.14976	-6.7522E-05	-0.12312	-5.5511E-05	451.2046962469476	28.457	0.16262	28.538	28.452	28.615	0.080811					5	3	2	0	0	0	0.024726	1	1600	1600		38.714	3.5621	1	17749	+		57662	35099	40355	40419	63079	63079					-0.07201603921089372
PFPVSLQVN	9	Unmodified	_PFPVSLQVN_					0	0	0			REV__ENSG00000275023|ENST00000621332|MLLT6	REV__ENSG00000275023|ENST00000621332|MLLT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7781066894531	2	500.776742	999.538931	-0.020694	-1.0363E-05	3.3332	0.0016692	3.3125	0.0016588	500.7782086902758	69.138	2.5003	69.138	67.528	70.029	0					131	64	3	0	0	0	0.70156	1	8383	8383		45.972	1.8554	1	3048400	+		57663	29187	40356	40420	63080	63080					0.03914357931569157
PFQICPGPM	9	Unmodified	_PFQICPGPM_					0	0	0		nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN;nc|ENSG00000130518|Q9H0B3-5|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7657775878906	2	495.232799	988.451044	-0.9814	-0.00048602	0.028753	1.4239E-05	-0.95265	-0.00047178	495.2327459354637	41.064	0.45629	40.834	40.624	41.08	-0.23029					18	11	3	0	0	0	0.024497	1	3571	3571		13.775	0	1	98590			57664	4426	40357	40421	63081	63081					-0.043643022550440946
PFQPGIDET	9	Unmodified	_PFQPGIDET_					0	0	0			REV__ENSG00000132911|ENST00000255262|NMUR2	REV__ENSG00000132911|ENST00000255262|NMUR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7578125	2	502.24019	1002.46583	-0.085546	-4.2965E-05	-1.9753	-0.00099209	-2.0609	-0.001035	502.2405712078584	37.018	0.27109	37.05	36.878	37.149	0.032269					10	6	2	0	0	0	0.024457	1	2940	2940		37.159	5.6293	1	32952	+		57665	23328	40358	40422	63082	63082					-0.03530815581711977
PFQRRNLLLGK	11	Unmodified	_PFQRRNLLLGK_					0	0	0			REV__nc|ENSG00000142655|O75381-2|PEX14	REV__nc|ENSG00000142655|O75381-2|PEX14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2093505859375	3	447.941973	1340.80409	-0.97728	-0.00043777	0.85235	0.0003818	-0.12493	-5.5961E-05	447.9422044204679	41.048	0.45187	40.818	40.589	41.041	-0.23029					25	11	3	0	0	0	0.024809	1	3593	3593		12.433	0	1	118090	+		57666	24174	40359	40423	63083	63083					0.1473182712502421
PFQTTIPLY	9	Unmodified	_PFQTTIPLY_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.2908325195312	2	540.292225	1078.5699	-0.27055	-0.00014618	0.051261	2.7696E-05	-0.21929	-0.00011848	540.292161975076	72.238	1.0051	71.963	71.666	72.671	-0.2751					76	23	5	0	0	0	0.29104	1	8488	8488		76.847	0.072494	1	6386700			57667	10199	40360	40424	63084	63084					0.03375511245803864
PFREMVLK	8	Unmodified	_PFREMVLK_					0	0	0		nc|ENSG00000132514|Q8IUN9-3|CLEC10A	nc|ENSG00000132514|Q8IUN9-3|CLEC10A	nc|ENSG00000132514|Q8IUN9-3|CLEC10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2821044921875	2	510.288963	1018.56337	-0.21546	-0.00010994	1.527	0.00077921	1.3115	0.00066927	510.28873928593816	61.813	0.24253	61.556	61.464	61.706	-0.25725					7	5	2	0	0	0	0.027866	1	6908	6908		37.159	14.117	1	111490			57668	18275	40361	40425	63085	63085					0.05483294813450357
PFRGKELQPG	10	Unmodified	_PFRGKELQPG_					0	0	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8087768554688	2	564.811648	1127.60874	-0.13202	-7.4567E-05	-1.7474	-0.00098694	-1.8794	-0.0010615	564.810518618915	108.37	0.44119	108.36	108.13	108.57	-0.0056458					68	22	4	0	0	0	1.1307	1	13804	13804		26.693	4.1133	1	5828300			57669	936	40362	40426	63086	63086					0.05004236600166223
PFRGKELQPG	10	Unmodified	_PFRGKELQPG_					0	0	0		ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.8099975585938	2	564.811648	1127.60874	-0.55541	-0.0003137	-1.628	-0.0009195	-2.1834	-0.0012332	564.8106150874135	108.46	0.30607	108.47	108.27	108.58	0.00457					39	15	3	0	0	0	1.1329	1	13774	13774		27.882	1.1893	1	5482600			57670	936	40362	40426	63087	63087					0.05004236600166223
PFRKAKAL	8	Unmodified	_PFRKAKAL_					0	0	0		ENSG00000145819|ENST00000645722|ARHGAP26;nc|ENSG00000145819|Q9UNA1|ARHGAP26	ENSG00000145819|ENST00000645722|ARHGAP26	ENSG00000145819|ENST00000645722|ARHGAP26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2367248535156	2	465.797812	929.581071	-0.43599	-0.00020308	-0.68118	-0.00031729	-1.1172	-0.00052038	465.79889304762804	29.434	0.35779	29.438	29.314	29.672	0.0031357					12	8	2	0	0	0	0.027866	1	1778	1778		83.287	14.802	1	109980			57671	5840	40363	40427	63088	63088					0.11346378130599533
PFRKPDPM	8	Unmodified	_PFRKPDPM_					0	0	0			REV__ENSG00000198951|ENST00000396398|NAGA	REV__ENSG00000198951|ENST00000396398|NAGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.30096435546875	2	494.257662	986.500772	0.044455	2.1972E-05	-4.1606	-0.0020564	-4.1161	-0.0020344	494.25971247170503	95.98	0.46649	95.98	95.648	96.115	0					19	10	3	0	0	0	0.027866	1	12219	12219		25.45	7.1258	1	69446	+		57672	28528	40364	40428	63089	63089					0.006981487452549118
PFRLTTYSI	9	Unmodified	_PFRLTTYSI_					0	0	0			REV__nc|ENSG00000012124|P20273-5|CD22	REV__nc|ENSG00000012124|P20273-5|CD22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2801513671875	2	549.303124	1096.5917	0.032773	1.8002E-05	2.9862	0.0016403	3.019	0.0016583	549.3045204951069	72.306	1.7503	72.315	71.69	73.44	0.0097733					83	44	3	0	0	0	0.024495	1	8778	8778		26.693	3.6504	1	850060	+		57673	19941	40365	40429	63090	63090					0.04726315994344077
PFRRWPPL	8	Unmodified	_PFRRWPPL_					0	0	0			REV__ENST00000478253.5_1_3:58256758-58260468:+|nuORF	REV__ENST00000478253.5_1_3:58256758-58260468:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.3261108398438	2	534.808711	1067.60287	-0.39944	-0.00021362	2.0635	0.0011036	1.6641	0.00088998	534.8096548498718	77.991	0.5482	77.729	77.528	78.077	-0.26202					26	12	3	0	0	0	0.027866	1	9285	9285		21.702	5.2292	1	122100	+		57674	33359	40366	40430	63091	63091					0.07177182879172506
PFRSLGPPSL	10	Unmodified	_PFRSLGPPSL_					0	0	0			REV__ENST00000256319.6_1_14:76117823-76117901:-|nuORF	REV__ENST00000256319.6_1_14:76117823-76117901:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.802734375	2	535.803291	1069.59203	0.083841	4.4922E-05	2.3939	0.0012827	2.4778	0.0013276	535.8046090517312	66.049	0.73274	66.049	65.529	66.262	0					34	18	2	0	0	0	0.94316	1	7866	7866		51.193	1.7511	1	14482000	+		57675	29552	40367	40431	63092	63092					0.06001735714221468
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7793884277344	2	449.779088	897.543623	0.38029	0.00017104	-0.32397	-0.00014572	0.056314	2.5329E-05	449.778851411549	67.892	1.6712	67.911	67.466	69.137	0.018913					110	43	4	0	0	0	0.67787	1	8079	8079		69.093	3.1955	1	6770300			57676	18602	40368	40432	63093	63093					0.09075286864992904
PFRYTLLPD	9	Unmodified	_PFRYTLLPD_					0	0	0			REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF	REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2929077148438	2	561.303124	1120.5917	-0.75405	-0.00042325	3.1833	0.0017868	2.4292	0.0013635	561.8061718731934	82.645	0.34875	82.505	82.26	82.608	-0.14014					10	7	2	0	0	0	0.024436	1	9922	9922		23.042	0	1	21402	+		57677	25346	40369	40433	63094	63094					0.036223159943801875
PFSELPFLP	9	Unmodified	_PFSELPFLP_					0	0	0		nc|ENSG00000053702|Q9BQI9-2|NRIP2;ENSG00000053702|ENST00000337508|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8002319335938	2	523.781493	1045.54843	-1.1249	-0.00058918	-1.3734	-0.00071934	-2.4982	-0.0013085	523.7804074307611	48.206	0.44538	48.206	48.14	48.585	0					15	12	2	0	0	0	0.024535	1	4947	4947		18.324	6.1177	1	484000			57678	1162	40370	40434	63095	63095					0.027481262170795162
PFSGANLF	8	Unmodified	_PFSGANLF_					0	0	0			REV__nc|ENSG00000141738|Q14451-2|GRB7	REV__nc|ENSG00000141738|Q14451-2|GRB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.748291015625	2	426.716153	851.417754	-0.58096	-0.0002479	-1.4872	-0.00063462	-2.0682	-0.00088252	426.7143794658154	26.315	0.64304	26.152	25.894	26.537	-0.16331					47	18	4	0	0	0	0.027866	1	1362	1362		42.474	7.2737	1	467290	+		57679	24119	40371	40435	63096	63096					-0.013898447111046153
PFSKRMSEL	9	Unmodified	_PFSKRMSEL_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.327880859375	2	547.786784	1093.55902	-0.20235	-0.00011084	1.8567	0.0010171	1.6543	0.00090621	547.7869012266168	57.677	0.68183	57.502	56.964	57.646	-0.1749					31	17	3	0	0	0	0.024205	1	6466	6466		53.351	0	1	369110	+		57680	36675	40372	40436	63097	63097					0.015977855998926316
PFSMNLLDL	9	Unmodified	_PFSMNLLDL_					0	0	0		ENST00000544619.1_1_12:67699639-67699675:+|nuORF	ENST00000544619.1_1_12:67699639-67699675:+|nuORF	ENST00000544619.1_1_12:67699639-67699675:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.28857421875	2	525.270435	1048.52632	-0.27623	-0.00014509	1.3041	0.00068501	1.0279	0.00053991	525.2713704984437	77.355	0.46257	77.144	76.871	77.333	-0.21087					17	10	2	0	0	0	0.023061	1	9491	9491		90.37	0	1	283480			57681	16481	40373	40437	63098	63098					0.003995784770268074
PFSMNLLDL	9	Unmodified	_PFSMNLLDL_					0	0	0		ENST00000544619.1_1_12:67699639-67699675:+|nuORF	ENST00000544619.1_1_12:67699639-67699675:+|nuORF	ENST00000544619.1_1_12:67699639-67699675:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.270435	1048.52632	-0.41034	-0.00021554	-2.162	-0.0011356	-2.5723	-0.0013512	525.270026306271	77.217	0.63664	77.217	76.955	77.591	0	0.039082	-0.0021189	NaN	90.37	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267050			57682	16481	40373	40437							0.003995784770268074
PFSPLPNPC	9	Unmodified	_PFSPLPNPC_					0	0	0		ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	ENST00000358598.6_1_17:66526593-66526758:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.8064270019531	2	486.236396	970.458238	-0.2858	-0.00013896	3.2794	0.0015946	2.9936	0.0014556	486.23802821391513	34.439	0.57899	34.434	34.19	34.769	-0.0045624					21	14	2	0	0	0	0.024354	1	2525	2525		38.806	0	1	171650			57683	12718	40374	40438	63099	63099					-0.02817246382983285
PFSTETHF	8	Unmodified	_PFSTETHF_					0	0	0			REV__chr10:5004014-5007407|111|190.8|0.0|24.19|-|0|AKR1C2,AKR1C2|1	REV__chr10:5004014-5007407|111|190.8|0.0|24.19|-|0|AKR1C2,AKR1C2|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.64678955078125	2	483.2218	964.429047	0.049931	2.4128E-05	-0.16499	-7.9729E-05	-0.11506	-5.5601E-05	483.22158814989064	48.918	0.6598	48.918	48.516	49.176	0					30	18	2	0	0	0	0.027866	1	4973	4973		35.201	12.158	1	431230	+		57684	19342	40375	40439	63100	63100					-0.05459067407616658
PFSTETHF	8	Unmodified	_PFSTETHF_					0	0	0			REV__chr10:5004014-5007407|111|190.8|0.0|24.19|-|0|AKR1C2,AKR1C2|1	REV__chr10:5004014-5007407|111|190.8|0.0|24.19|-|0|AKR1C2,AKR1C2|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.2218	964.429047	-1.0564	-0.00051046	0.99934	0.0004829	-0.057023	-2.7555E-05	483.2220514919082	48.822	0.82262	48.889	48.486	49.308	0.066795	-0.047604	0.00072625	NaN	35.201	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357390	+		57685	19342	40375	40439							-0.05459067407616658
PFTDLCFLN	9	Unmodified	_PFTDLCFLN_					0	0	0		nc|ENSG00000129810|Q5FBB7-3|SGO1;nc|ENSG00000129810|Q5FBB7-2|SGO1;nc|ENSG00000129810|Q5FBB7|SGO1;nc|ENSG00000129810|Q5FBB7-5|SGO1;nc|ENSG00000129810|Q5FBB7-4|SGO1;ENSG00000129810|ENST00000412997|SGO1	nc|ENSG00000129810|Q5FBB7-3|SGO1	nc|ENSG00000129810|Q5FBB7-3|SGO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.3195190429688	2	535.254785	1068.49502	-0.78579	-0.0004206	2.1886	0.0011714	1.4028	0.00075085	535.7590574027342	33.858	0.40527	33.914	33.732	34.137	0.056568					12	9	2	0	0	0	0.024506	1	2407	2407		38.806	13.232	1	39683			57686	18262	40376	40440	63101	63101					-0.036489945570565396
PFTDLCFLN	9	Unmodified	_PFTDLCFLN_					0	0	0		nc|ENSG00000129810|Q5FBB7-3|SGO1;nc|ENSG00000129810|Q5FBB7-2|SGO1;nc|ENSG00000129810|Q5FBB7|SGO1;nc|ENSG00000129810|Q5FBB7-5|SGO1;nc|ENSG00000129810|Q5FBB7-4|SGO1;ENSG00000129810|ENST00000412997|SGO1	nc|ENSG00000129810|Q5FBB7-3|SGO1	nc|ENSG00000129810|Q5FBB7-3|SGO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.254785	1068.49502	-0.7345	-0.00039315	3.7351	0.0019992	3.0006	0.0016061	536.2606107923239	34.148	0.35948	34.148	34.011	34.371	0	0.1168	0.0009049	NaN	30.504	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41941			57687	18262	40376	40440							-0.036489945570565396
PFTIQTPDI	9	Unmodified	_PFTIQTPDI_					0	0	0			REV__ENSG00000170364|ENST00000358065|SETMAR	REV__ENSG00000170364|ENST00000358065|SETMAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2719116210938	2	516.274032	1030.53351	-0.84464	-0.00043606	-3.5812	-0.0018489	-4.4258	-0.0022849	516.2721239262532	48.989	1.058	48.888	48.618	49.676	-0.1008					60	27	4	0	0	0	0.31037	2	4890	4890;4916		74.255	4.6274	1	3458600	+		57688	26459	40377	40441	63102;63103	63102					0.01946634349087617
PFTKESFEL	9	Unmodified	_PFTKESFEL_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.279296875	2	549.279315	1096.54408	-0.31741	-0.00017435	-0.42802	-0.0002351	-0.74543	-0.00040945	549.2790710565912	77.724	0.85916	77.724	77.382	78.242	0					42	20	3	0	0	0	0.45795	1	9612	9612		62.107	3.3255	1	2153700			57689	5030	40378	40442	63104	63104					-0.0003338299648021348
PFTLGVFILC	10	Unmodified	_PFTLGVFILC_					0	0	0			REV__ENST00000467238.1_1_7:127631037-127637644:+|nuORF	REV__ENST00000467238.1_1_7:127631037-127637644:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.3065795898438	2	555.306821	1108.59909	1.5041	0.00083522	-1.8787	-0.0010432	-0.3746	-0.00020802	555.3057384677767	19.029	0.49364	19.029	18.823	19.317	0					22	9	3	0	0	0	0.9856	1	368	368		47.916	1.9434	1	155170	+		57690	33067	40379	40443	63105	63105					0.049133322704619786
PFTLRSAVS	9	Unmodified	_PFTLRSAVS_					0	0	0			REV__ENSG00000160396|ENST00000291823|HIPK4	REV__ENSG00000160396|ENST00000291823|HIPK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2197570800781	2	489.274367	976.53418	-0.56338	-0.00027565	1.6308	0.00079791	1.0674	0.00052226	489.2745600699807	29.465	0.63324	29.292	29.07	29.703	-0.17258					24	14	2	0	0	0	0.023454	1	1781	1781		62.107	0	1	39135	+		57691	25318	40380	40444	63106	63106					0.04497473788808293
PFTMSILSL	9	Unmodified	_PFTMSILSL_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.2919616699219	2	504.775354	1007.53615	0.486	0.00024532	-3.5309	-0.0017823	-3.0449	-0.001537	505.27515434907997	96.284	0.54012	96.29	95.988	96.528	0.0065079					16	12	2	0	0	0	0.024436	1	12204	12204		16.473	0	1	71903	+		57692	36647	40381	40445	63107	63107					0.03268766482403862
PFTSLQAF	8	Unmodified	_PFTSLQAF_					0	0	0		ENST00000289373.4_1_X:101770083-101771676:-|nuORF	ENST00000289373.4_1_X:101770083-101771676:-|nuORF	ENST00000289373.4_1_X:101770083-101771676:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.7349548339844	2	455.737086	909.459619	-0.25086	-0.00011433	-4.0636	-0.0018519	-4.3144	-0.0019663	455.7350872760236	32.259	1.065	32.101	31.861	32.926	-0.15772					58	25	4	0	0	0	1.0133	1	2200	2200		35.201	3.2459	1	1521900			57693	11779	40382	40446	63108	63108					0.0012671097742895654
PFTTLFLTL	9	Unmodified	_PFTTLFLTL_					0	0	0			REV__ENST00000597440.5_1_19:7913809-7917719:+|nuORF	REV__ENST00000597440.5_1_19:7913809-7917719:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8021240234375	2	526.804968	1051.59538	-0.9052	-0.00047686	-3.2774	-0.0017265	-4.1826	-0.0022034	526.8031501488817	76.288	0.8439	76.288	75.956	76.799	0					54	20	3	0	0	0	0.52323	1	9396	9396		57.811	0	1	3157600	+		57694	24154	40383	40447	63109	63109					0.07164985768213228
PFTYRGLP	8	Unmodified	_PFTYRGLP_					0	0	0		nc|ENSG00000164220|O00254-2|F2RL2;ENSG00000164220|ENST00000296641|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	nc|ENSG00000164220|O00254-2|F2RL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.7846374511719	2	475.758352	949.502152	0.27408	0.00013039	-4.1881	-0.0019925	-3.914	-0.0018621	475.75633598909195	34.659	0.68586	34.435	34.219	34.904	-0.22412					21	16	2	0	0	0	0.027866	1	2564	2564		12.959	0	1	86905			57695	7241	40384	40448	63110	63110					0.02538106105669158
PFVAPASDLS	10	Unmodified	_PFVAPASDLS_					0	0	0			REV__ENST00000397420.7_1_11:838351-838822:+|nuORF	REV__ENST00000397420.7_1_11:838351-838822:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.253173828125	2	502.258382	1002.50221	-0.26292	-0.00013205	-4.1519	-0.0020853	-4.4148	-0.0022174	502.2564307841697	44.395	0.60729	44.432	44.142	44.749	0.0369					24	17	2	0	0	0	0.03519	1	4219	4219		35.618	0	1	164380	+		57696	31772	40385	40449	63111	63111					0.0010606131498889226
PFVFHSVVL	9	Unmodified	_PFVFHSVVL_					0	0	0		ENST00000534598.5_1_11:124747729-124748095:+|nuORF;ENST00000527245.5_1_11:124747729-124748693:+|nuORF	ENST00000534598.5_1_11:124747729-124748095:+|nuORF	ENST00000534598.5_1_11:124747729-124748095:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	522.796630859375	2	522.797478	1043.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.163	1	35.946	35.446	36.446	-0.21661								0	0	0	0.53756	1	2807	2807		47.916	0	1				57697	16145	40386	40450	63112	63112					0.0603553869091229
PFVFHSVVL	9	Unmodified	_PFVFHSVVL_					0	0	0		ENST00000534598.5_1_11:124747729-124748095:+|nuORF;ENST00000527245.5_1_11:124747729-124748693:+|nuORF	ENST00000534598.5_1_11:124747729-124748095:+|nuORF	ENST00000534598.5_1_11:124747729-124748095:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	522.797119140625	2	522.797478	1043.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.189	1	35.991	35.491	36.491	-0.19829								0	0	0	0.59296	1	2803	2803		40.573	3.4135	1				57698	16145	40386	40450	63113	63113					0.0603553869091229
PFVHAETAY	9	Unmodified	_PFVHAETAY_					0	0	0			REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.768310546875	2	517.750724	1033.4869	-0.3624	-0.00018764	-1.2094	-0.00062617	-1.5718	-0.00081381	517.7490850247082	39.271	0.17547	39.271	39.148	39.323	0					6	4	2	0	0	0	0.024517	1	3352	3352		26.796	1.3459	1	105680	+		57699	20236	40387	40451	63114	63114					-0.028508054821941187
PFVIVEDID	9	Unmodified	_PFVIVEDID_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2888793945312	2	523.773865	1045.53318	0.31449	0.00016472	1.808	0.000947	2.1225	0.0011117	523.7743613556377	50.948	1.4612	50.836	50.379	51.84	-0.11163					69	38	3	0	0	0	0.024183	1	5294	5294		50.025	0	1	383600			57700	9231	40388	40452	63115	63115					0.012232146292262769
PFVLRSQT	8	Unmodified	_PFVLRSQT_					0	0	0			REV__ENST00000417038.1_1_2:175352160-175352238:+|nuORF	REV__ENST00000417038.1_1_2:175352160-175352238:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2360534667969	2	474.269084	946.523616	-0.04813	-2.2827E-05	2.2733	0.0010781	2.2251	0.0010553	474.270165170666	29.618	0.44088	29.622	29.351	29.792	0.0031357					18	10	2	0	0	0	0.027866	1	1805	1805		11.511	0	1	90298	+		57701	32090	40389	40453	63116	63116					0.048214911343848144
PFVPAYPGL	9	Unmodified	_PFVPAYPGL_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7972717285156	2	480.763104	959.511654	0.083332	4.0063E-05	-1.7053	-0.00081985	-1.622	-0.00077979	480.76209132797925	68.639	0.47725	68.658	68.427	68.904	0.018913					17	12	2	0	0	0	0.024389	1	8190	8190		39.021	0	1	108740			57702	2650	40390	40454	63117	63117					0.030278743911935635
PFVPAYPGL	9	Unmodified	_PFVPAYPGL_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.763104	959.511654	0.4683	0.00022514	-2.9238	-0.0014056	-2.4555	-0.0011805	480.7615788038456	68.744	0.20213	68.514	68.357	68.559	-0.23048	-0.07211	-0.00073412	NaN	39.021	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53838			57703	2650	40390	40454							0.030278743911935635
PFVPLRKDD	9	Unmodified	_PFVPLRKDD_					0	0	0		ENST00000381295.6_1_4:56720092-56724536:+|nuORF	ENST00000381295.6_1_4:56720092-56724536:+|nuORF	ENST00000381295.6_1_4:56720092-56724536:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.8114624023438	2	543.800749	1085.58694	-0.28122	-0.00015293	-1.3845	-0.0007529	-1.6657	-0.00090583	543.7996379867984	63.27	0.40515	63.049	62.776	63.181	-0.22097					15	9	2	0	0	0	0.024541	1	7120	7120		3.6843	0	1	315300			57704	13336	40391	40455	63118	63118					0.04757431851612637
PFVRDPQVI	9	Unmodified	_PFVRDPQVI_					0	0	0			REV__ENST00000461739.1_1_X:153175506-153175857:-|nuORF	REV__ENST00000461739.1_1_X:153175506-153175857:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.8010864257812	2	535.803291	1069.59203	-0.55966	-0.00029987	-3.4658	-0.001857	-4.0254	-0.0021568	535.8012907264878	41.319	1.1908	41.342	40.83	42.021	0.023006					84	33	4	0	0	0	0.35646	1	3660	3660		68.787	6.6794	1	6015400	+		57705	20862	40392	40456	63119	63119					0.06001735714221468
PFVRRSMP	8	Unmodified	_PFVRRSMP_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|146|1|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|146|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3156433105469	2	495.271104	988.527655	-0.71056	-0.00035192	1.1189	0.00055415	0.40831	0.00020223	495.27035204247636	81.221	0.88675	81.245	80.89	81.777	0.023911					38	21	3	0	0	0	0.027866	1	9985	9985		52.299	0	1	136520	+		57706	36284	40393	40457	63120	63120					0.032932573564494305
PFVRRTRAL	9	Unmodified	_PFVRRTRAL_					0	0	0			REV__ENST00000483436.5_1_1:28908244-28908301:-|nuORF	REV__ENST00000483436.5_1_1:28908244-28908301:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.269287109375	2	558.343449	1114.67235	-0.3106	-0.00017342	-0.62852	-0.00035093	-0.93911	-0.00052435	558.3428492872996	33.176	0.40282	32.945	32.711	33.114	-0.23107					13	9	2	0	0	0	0.024541	1	2334	2334		11.511	0	1	58962	+		57707	33509	40394	40458	63121	63121					0.11959641827957057
PFVTKVYKV	9	Unmodified	_PFVTKVYKV_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8085327148438	2	540.826235	1079.63792	-0.46612	-0.00025209	0.57088	0.00030875	0.10476	5.6656E-05	541.3282525705833	63.851	0.14079	63.599	63.518	63.659	-0.25141					7	3	3	0	0	0	0.024487	1	7460	7460		17.365	0	1	99930	+		57708	23017	40395	40459	63122	63122					0.10128380896458111
PFWALLSL	8	Unmodified	_PFWALLSL_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.7760009765625	2	473.773471	945.53239	0.94729	0.0004488	4.2703	0.0020232	5.2176	0.002472	473.77554856620804	98.606	0.90131	98.602	98.265	99.166	-0.0038834					39	20	3	0	0	0	0.44541	1	12529	12529		90.939	3.1847	1	663690	+		57709	21826	40396	40460	63123	63123					0.057444647708507546
PFYLSAVLCV	10	Unmodified	_PFYLSAVLCV_					0	0	0		STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant;STEAP4|p.A396Pfs*25|1|0.29|ENSG00000127954|chr7:88279586-88279592|TGTGGGC/-|frameshift_variant;ENSG00000127954|ENST00000380079|STEAP4	STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	STEAP4|p.F357Nfs*35|1|0.05|ENSG00000127954|chr7:88280996-88280997|-/TGTTG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2977294921875	2	556.296453	1110.57835	1.157	0.00064364	0.34944	0.00019439	1.5064	0.00083803	556.2965587112253	107.12	0.65836	107.12	106.81	107.47	0					31	17	2	0	0	0	1.1259	1	13750	13750		24.203	2.2429	1	128400			57710	4270	40397	40461	63124	63124					0.02748741890763995
PFYSSNQLH	9	Unmodified	_PFYSSNQLH_					0	0	0		ENSG00000180708|ENST00000641042|OR10K2	ENSG00000180708|ENST00000641042|OR10K2	ENSG00000180708|ENST00000641042|OR10K2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7747802734375	2	546.759081	1091.50361	-0.45581	-0.00024922	1.8783	0.001027	1.4225	0.00077774	546.7596978049525	33.486	0.38779	33.285	33.016	33.404	-0.20019					15	9	2	0	0	0	0.024523	1	2382	2382		21.96	0.27414	1	121490			57711	8991	40398	40462	63125	63125					-0.03848304596226626
PFYTVGEKV	9	Unmodified	_PFYTVGEKV_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.304931640625	2	520.276575	1038.5386	-0.58496	-0.00030434	-2.9361	-0.0015276	-3.5211	-0.0018319	520.2749542803394	93.064	0.76356	93.064	92.794	93.558	0					35	17	4	0	0	0	0.024292	1	11874	11874		58.782	8.7574	1	230310			57712	3250	40399	40463	63126	63126					0.020869382117098212
PFYTVGEKV	9	Unmodified	_PFYTVGEKV_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3049926757812	2	520.276575	1038.5386	-0.56144	-0.00029211	-2.4971	-0.0012992	-3.0585	-0.0015913	520.2750620768564	93.081	1.0566	93.077	92.69	93.746	-0.0042038					40	24	3	0	0	0	0.022756	1	11854	11854		68.787	22.835	1	253130			57713	3250	40399	40463	63127	63127					0.020869382117098212
PGAAERRGTL	10	Unmodified	_PGAAERRGTL_					0	0	0			REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF	REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8038330078125	2	514.285797	1026.55704	-0.13171	-6.7735E-05	4.2172	0.0021688	4.0855	0.0021011	514.2877082940366	58	0.39735	58	57.796	58.193	0					14	10	2	0	0	0	0.03519	1	6567	6567		32.812	0	1	384320	+		57714	31198	40400	40464	63128	63128					0.044824929062770025
PGAEKLSH	8	Unmodified	_PGAEKLSH_					0	0	0		ENST00000571637.1_1_17:3808599-3819210:-|nuORF	ENST00000571637.1_1_17:3808599-3819210:-|nuORF	ENST00000571637.1_1_17:3808599-3819210:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2406921386719	2	419.72451	837.434466	1.027	0.00043107	-0.69951	-0.0002936	0.32753	0.00013747	419.72416302769204	36.893	0.50704	36.893	36.613	37.12	0					16	12	2	0	0	0	0.027866	1	2995	2995		12.207	0	1	150080			57715	17041	40401	40465	63129	63129					0.009246561748454951
PGAGAQGAASL	11	Unmodified	_PGAGAQGAASL_					0	0	0		ENST00000487078.5_1_2:27274523-27275867:+|nuORF	ENST00000487078.5_1_2:27274523-27275867:+|nuORF	ENST00000487078.5_1_2:27274523-27275867:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7407531738281	2	450.232699	898.450845	-0.32087	-0.00014447	0.79741	0.00035902	0.47654	0.00021455	450.2329346869236	30.386	0.45858	30.395	30.123	30.581	0.0086708					16	10	2	0	0	0	0.024803	1	1949	1949		62.107	40.405	1	343950			57716	15358	40402	40466	63130	63130					-0.002442626590436703
PGAGKSAPRV	10	Unmodified	_PGAGKSAPRV_					0	0	0			REV__ENST00000253669.9_1_19:17186251-17186383:-|nuORF	REV__ENST00000253669.9_1_19:17186251-17186383:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.27215576171875	2	470.272158	938.529764	-0.047033	-2.2118E-05	-0.02984	-1.4033E-05	-0.076872	-3.6151E-05	470.2720597866912	91.389	1.7988	91.249	90.823	92.622	-0.13942					104	42	5	0	0	0	1.1286	1	11197	11197		25.574	0.12388	1	5353800	+		57717	29520	40403	40467	63131	63131					0.058040093658974
PGAGPAGG	8	Unmodified	_PGAGPAGG_					0	0	0			REV__nc|ENSG00000130731|Q96S19-2|METTL26	REV__nc|ENSG00000130731|Q96S19-2|METTL26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.2850952148438	1	583.283451	582.276175	-0.91822	-0.00053558	3.44	0.0020065	2.5218	0.0014709	583.2857163071184	55.344	1.6663	55.113	54.748	56.414	-0.23087					96	45	5	0	0	0	1.0574	2	5956	5956;5983		10.185	0	1	27019000	+		57718	32666	40404	40468	63132;63133	63132					-0.031672180135615235
PGAKPRAR	8	Unmodified	_PGAKPRAR_					0	0	0		ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7222900390625	2	426.761761	851.508969	-0.77267	-0.00032975	0.75293	0.00032132	-0.019746	-8.4269E-06	426.76192850817944	32.448	0.67943	32.448	32.224	32.903	0					33	17	3	0	0	0	0.027866	1	2318	2318		28.254	14.479	1	497960			57719	11572	40405	40469	63134	63134					0.07727463776893728
PGAKPRAR	8	Unmodified	_PGAKPRAR_					0	0	0		ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.761761	851.508969	-0.54054	-0.00023068	0.49812	0.00021258	-0.042424	-1.8105E-05	426.7618718550758	32.383	0.63695	32.395	32.144	32.781	0.011799	0.011777	9.5144E-05	NaN	25.45	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500790			57720	11572	40405	40469							0.07727463776893728
PGAKPRAR	8	Unmodified	_PGAKPRAR_					0	0	0		ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	ENST00000264716.8_1_2:28616261-28626983:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.761761	851.508969	-0.0029129	-1.2431E-06	-0.0021025	-8.9728E-07	-0.0050154	-2.1404E-06	426.7616421780487	32.244	0.72192	32.307	32.045	32.766	0.062889	-0.076362	-0.00033181	NaN	25.45	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451590			57721	11572	40405	40469							0.07727463776893728
PGALGLWLP	9	Unmodified	_PGALGLWLP_					0	0	0			REV__ENSG00000099999|ENST00000382363|RNF215	REV__ENSG00000099999|ENST00000382363|RNF215	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.7430114746094	2	462.271096	922.527639	-0.008584	-3.9681E-06	3.3749	0.0015601	3.3663	0.0015561	462.27237422355813	51.232	0.56982	50.955	50.665	51.235	-0.27643					27	14	3	0	0	0	0.024475	1	5256	5256		29.842	0	1	153460	+		57722	21031	40406	40470	63135	63135					0.06327580628078522
PGALQRNL	8	Unmodified	_PGALQRNL_					0	0	0		ENST00000369984.4_1_X:153216315-153216354:-|nuORF	ENST00000369984.4_1_X:153216315-153216354:-|nuORF	ENST00000369984.4_1_X:153216315-153216354:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7806396484375	2	434.753601	867.49265	0.41139	0.00017885	-1.5015	-0.0006528	-1.0902	-0.00047395	434.7533568886255	40.752	0.49999	40.752	40.516	41.016	0					22	13	2	0	0	0	0.027866	1	3584	3584		13.775	0	1	121360			57723	12945	40407	40471	63136	63136					0.053603378201387386
PGALQRNL	8	Unmodified	_PGALQRNL_					0	0	0		ENST00000369984.4_1_X:153216315-153216354:-|nuORF	ENST00000369984.4_1_X:153216315-153216354:-|nuORF	ENST00000369984.4_1_X:153216315-153216354:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	2	434.753601	867.49265	0.24815	0.00010788	2.5276	0.0010989	2.7757	0.0012068	434.75421377823136	38.648	0.24216	38.423	38.32	38.562	-0.2257					6	5	2	0	0	0	0.027866	1	3183	3183		18.324	0	1	24191			57724	12945	40407	40471	63137	63137					0.053603378201387386
PGAPHGPAR	9	Unmodified	_PGAPHGPAR_					0	0	0			REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.7375183105469	2	430.230294	858.446034	-0.0478	-2.0565E-05	-3.632	-0.0015626	-3.6798	-0.0015832	430.2267078245207	40.118	0.2944	39.968	39.746	40.04	-0.1497					10	7	2	0	0	0	0.024497	1	3424	3424		13.775	2.9098	1	26537	+		57725	30376	40408	40472	63138	63138					0.011148979888503163
PGATSLGSPIP	11	Unmodified	_PGATSLGSPIP_					0	0	0		ENSG00000130202|ENST00000252483|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7709655761719	2	498.771657	995.528761	0.43234	0.00021564	-1.7911	-0.00089334	-1.3587	-0.0006777	498.77066535088994	104.85	1.772	104.85	104.16	105.93	0					146	51	5	0	0	0	1.0119	1	13460	13460		34.173	3.6689	1	5167900			57726	4395	40409	40473	63139	63139					0.030817502063200664
PGATSLGSPIP	11	Unmodified	_PGATSLGSPIP_					0	0	0		ENSG00000130202|ENST00000252483|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.771484375	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	1.0119	1	13114	13114		34.173	1.3601	1	3882100			57727	4395	40409	40473	63140	63140					0.030817502063200664
PGATSLGSPIP	11	Unmodified	_PGATSLGSPIP_					0	0	0		ENSG00000130202|ENST00000252483|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2	ENSG00000130202|ENST00000252483|NECTIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.77117919921875	2	498.771657	995.528761	0.20366	0.00010158	-1.3994	-0.00069797	-1.1957	-0.00059639	498.770832586192	105.37	1.3357	105.2	104.87	106.2	-0.16484					137	51	4	0	0	0	1.0119	2	13117	13117;13138		34.173	2.6427	1	3775500			57728	4395	40409	40473	63141;63142	63141					0.030817502063200664
PGAVKICR	8	Unmodified	_PGAVKICR_					0	0	0			REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF	REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2401428222656	2	422.247098	842.479642	-0.15454	-6.5252E-05	-0.74828	-0.00031596	-0.90282	-0.00038121	422.24569458557676	33.925	0.40927	33.981	33.81	34.22	0.056572					14	9	3	0	0	0	0.027866	1	2461	2461		19.36	0	1	48366	+		57729	34184	40410	40474	63143	63143					0.05210183436383886
PGCPVWKV	8	Unmodified	_PGCPVWKV_					0	0	0		SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|5|1|sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|12|2|sense;chr15:39807258-39894532|137|21.23|0.0|15.12|-|2|TE_info:SVA_F,SVA_F_dup763,SVA,Retroposon,donor,-,39894532,39895275|GPR176,None|6;chr18:49491584-49578178|122|488.25|0.0|25.54|-|1|TE_info:SVA_F,SVA_F_dup867,SVA,Retroposon,donor,-,49578178,49579001|RPL17-C18orf32,None|4;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|4|1|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|13|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|4|1|sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|4|1|sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|24|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|37|3|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|4|1|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|19|2|sense;SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|16|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|4|1|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|34|3|sense;chr12:121993709-121999716|467|38.79|0.37|6.71|+|1|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993709|None,CFAP251|4;chr12:121993889-121999716|119|12.75|0.02|9.21|+|1|TE_info:SVA_F,SVA_F_dup702,SVA,Retroposon,donor,+,121993006,121993889|None,CFAP251|4;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|34|3|sense;SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|22|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|4|1|sense;SVA_F_dup805|chr16:56739964-56741004:-|2.04439344331472|0.1539008476170439|3.73|521.0|4|1|sense;SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|22|3|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|5|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|31|3|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|24|2|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|4|1|sense;chr2:38750194-38756111|187|65.66|0.09|9.55|-|1|TE_info:SVA_D,SVA_D_dup166,SVA,Retroposon,donor,-,38756111,38756756|SRSF7,None|5;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|4|1|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|34|3|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|4|1|sense;SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|4|1|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|21|2|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|43|3|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|36|3|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|4|1|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|3|1|sense;SVA_D_dup28|chr1:26595456-26597516:+|1.0430098222052036|0.1386803494010938|2.91|518.0|4|1|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|3|1|sense;SVA_A_dup46|chr1:153582339-153583909:+|2.031148181261908|0.1339009560295861|3.92|521.0|4|1|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|18|2|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|16|2|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|4|1|sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|18|2|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|4|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|15|2|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|36|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|25|2|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|23|2|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|16|2|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|16|2|sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|18|2|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|18|2|sense;chr9:116820783-116840693|208|10.41|0.01|9.96|-|2|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840693,116841394|ASTN2,None|4;chr1:206064097-206097733|206|10.51|0.19|5.76|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064097|None,RHEX|4;chr1:206064304-206097733|274|14.92|0.63|4.56|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064304|None,RHEX|4;chr20:8644500-8646102|134|11.7|0.0|12.94|+|2|TE_info:SVA_D,SVA_D_dup1365,SVA,Retroposon,donor,+,8643757,8644500|None,PLCB1|5;chr9:116820783-116840613|327|19.44|0.05|8.75|-|0|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840613,116841394|ASTN2,None|4;chr9:116820783-116840653|226|10.77|0.01|9.93|-|1|TE_info:SVA_C,SVA_C_dup223,SVA,Retroposon,donor,-,116840653,116841394|ASTN2,None|4;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|4|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|37|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|4|1|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|35|3|sense;SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|27|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|17|2|sense;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|4|1|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|27|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|29|3|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|4|1|sense;SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|11|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|17|2|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|4|1|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|30|3|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|41|3|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|19|2|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|17|2|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|33|3|sense;SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|3|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|5|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|5|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.756591796875	2	443.236199	884.457844	-0.86937	-0.00038534	-3.5543	-0.0015754	-4.4237	-0.0019607	443.2345227489162	20.994	0.97488	20.994	20.516	21.491	0					41	19	3	0	0	0	0.027866	1	621	621		20.482	8.275	1	42517			57730	315	40411	40475	63144	63144					0.010993786878202627
PGCRLVLT	8	Unmodified	_PGCRLVLT_					0	0	0		ENST00000477429.1_1_X:107683240-107686146:+|nuORF;ENST00000328300.10_2_X:107683240-107783007:+|nuORF	ENST00000477429.1_1_X:107683240-107686146:+|nuORF	ENST00000477429.1_1_X:107683240-107686146:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7378845214844	2	429.746931	857.479308	0.23644	0.00010161	2.3921	0.001028	2.6286	0.0011296	429.74824376274444	39.71	0.17669	39.71	39.594	39.771	0					5	4	2	0	0	0	0.027866	1	3439	3439		21.702	9.4955	1	79300			57731	12302	40412	40476	63145	63145					0.04486763716533915
PGEGMITFASV	11	Unmodified	_PGEGMITFASV_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.3241577148438	2	554.7708	1107.52705	-0.39138	-0.00021712	0.30999	0.00017197	-0.08139	-4.5153E-05	554.7706836549179	50.888	0.97208	50.739	50.289	51.261	-0.14916					59	27	3	0	0	0	0.024778	1	5315	5315		36.447	0	1	1243400	+		57732	23932	40413	40477	63146	63146					-0.022416268739334555
PGELLTLI	8	Unmodified	_PGELLTLI_					0	0	0		nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;nc|ENSG00000225697|Q9BXS9-6|SLC26A6	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.26226806640625	2	428.262936	854.51132	0.10911	4.6729E-05	-2.7902	-0.0011949	-2.6811	-0.0011482	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0572	3	11355	11355;11391;11416		28.254	5.0938	1	88816000			57733	10656	40414	40478	63147;63148;63149	63147					0.0782445467133357
PGELLTLI	8	Unmodified	_PGELLTLI_					0	0	0		nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;nc|ENSG00000225697|Q9BXS9-6|SLC26A6	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2620849609375	2	428.262936	854.51132	0.49679	0.00021276	-3.3115	-0.0014182	-2.8147	-0.0012054	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0572	1	11284	11284		28.254	0	1	86424000			57734	10656	40414	40478	63150	63150					0.0782445467133357
PGFVWLWF	8	Unmodified	_PGFVWLWF_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000497693.1_1_9:37430482-37431094:+|nuORF;nc|ENSG00000137106|Q9UBQ7-2|GRHPR	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2952270507812	2	526.273638	1050.53272	-0.25227	-0.00013276	1.96	0.0010315	1.7077	0.00089872	526.2747780126716	58.498	1.0078	58.31	58.093	59.1	-0.18795					35	24	3	0	0	0	0.027866	1	6421	6421		16.705	0	1	925170			57735	13216	40415	40479	63151	63151					0.009478844906880113
PGGAGGPA	8	Unmodified	_PGGAGGPA_					0	0	0		ENST00000338754.8_2_22:26937456-26937612:-|nuORF;ENST00000565348.5_1_16:30484158-30495228:+|nuORF	ENST00000338754.8_2_22:26937456-26937612:-|nuORF	ENST00000338754.8_2_22:26937456-26937612:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.28564453125	1	583.283451	582.276175	-0.91822	-0.00053558	3.44	0.0020065	2.5218	0.0014709	583.2857163071184	55.344	1.6663	55.113	54.748	56.414	-0.23087					96	45	5	0	0	0	1.0574	2	5919	5919;5931		24.504	0	1	27019000			57736	12446	40416	40480	63152;63153	63152					-0.03167218013572892
PGGAGPGA	8	Unmodified	_PGGAGPGA_					0	0	0			REV__ENST00000360947.7_1_14:21561809-21566788:-|nuORF	REV__ENST00000360947.7_1_14:21561809-21566788:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.2857666015625	1	583.283451	582.276175	-0.91822	-0.00053558	3.44	0.0020065	2.5218	0.0014709	583.2857163071184	55.344	1.6663	55.113	54.748	56.414	-0.23087					96	45	5	0	0	0	1.0574	3	5909	5909;5943;5970		16.705	0	1	27019000	+		57737	30926	40417	40481	63154;63155;63156	63154					-0.03167218013572892
PGGAPPPPSA	10	Unmodified	_PGGAPPPPSA_					0	0	0		ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2186584472656	2	424.21906	846.423567	-0.22547	-9.5648E-05	-1.0525	-0.00044649	-1.278	-0.00054214	424.2185251046166	98.415	2.1934	98.415	97.594	99.787	0					127	50	5	0	0	0	1.0408	1	12522	12522		40.573	4.9543	1	7415800			57738	9119	40418	40482	63157	63157					-0.005787461994259502
PGGAPPPPSA	10	Unmodified	_PGGAPPPPSA_					0	0	0		ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.21881103515625	2	424.21906	846.423567	0.29841	0.00012659	-1.4896	-0.0006319	-1.1912	-0.00050531	424.2183732670556	99.233	1.6227	99.064	98.24	99.863	-0.16863					102	39	4	0	0	0	0.9856	1	12314	12314		47.916	0	1	4500900			57739	9119	40418	40482	63158	63158					-0.005787461994259502
PGGARRPP	8	Unmodified	_PGGARRPP_					0	0	0			REV__ENST00000481981.1_1_1:229406900-229424591:+|nuORF	REV__ENST00000481981.1_1_1:229406900-229424591:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2327880859375	2	404.232836	806.45112	0.2566	0.00010373	-0.94328	-0.00038131	-0.68668	-0.00027758	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0574	1	10184	10184		26.796	0	1	12775000	+		57740	33473	40419	40483	63159	63159					0.04015201851461825
PGGAVLLPT	9	Unmodified	_PGGAVLLPT_					0	0	0			REV__ENST00000342665.4_2_20:307600-308011:+|nuORF	REV__ENST00000342665.4_2_20:307600-308011:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.7461242675781	2	412.747453	823.480354	0.53661	0.00022148	-3.6343	-0.0015	-3.0976	-0.0012785	412.7458595051266	84.56	2.4958	84.357	83.567	86.063	-0.20329					121	58	4	0	0	0	0.96855	1	10231	10231		26.796	1.3459	1	8025800	+		57741	30649	40420	40484	63160	63160					0.06155301357091503
PGGAVPTLL	9	Unmodified	_PGGAVPTLL_					0	0	0			REV__ENST00000482803.1_1_3:9799225-9799596:-|nuORF;REV__ENSG00000134072|ENST00000256460|CAMK1	REV__ENST00000482803.1_1_3:9799225-9799596:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.7461242675781	2	412.747453	823.480354	-0.24401	-0.00010072	-2.7496	-0.0011349	-2.9936	-0.0012356	412.7462093954923	84.44	1.6819	84.368	83.7	85.382	-0.072769					103	39	4	0	0	0	0.96855	1	10540	10540		26.796	0	1	6858600	+		57742	33492;23418	40421	40485	63161	63161					0.06155301357091503
PGGGGGGC	8	Unmodified	_PGGGGGGC_					0	0	0		ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2703247070312	1	561.208572	560.201295	-1.0899	-0.00061166	-0.15753	-8.8406E-05	-1.2474	-0.00070007	561.2088639921596	26.363	0.1742	26.199	26.133	26.307	-0.16331					5	4	2	0	0	0	0.027866	1	1323	1323		5.0869	0	1	62643			57743	8001	40422	40486	63162	63162					-0.09639723816451351
PGGGGGHG	8	Unmodified	_PGGGGGHG_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;PPFIA1-RNF167|1|fusion	nc|ENSG00000131626|Q13136-2|PPFIA1;PPFIA1-RNF167|1|fusion	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	595.2598266601562	1	595.258299	594.251023	-1.6799	-0.00099996	2.7659	0.0016464	1.086	0.00064646	595.2601260108953	76.168	0.79717	76.168	75.881	76.678	0					49	19	4	0	0	0	1.0574	2	9371	9371;9397		10.185	5.0979	1	1756100			57744	4537;18984	40423	40487	63163;63164	63163					-0.06233272816132285
PGGGGGSA	8	Unmodified	_PGGGGGSA_					0	0	0		ENST00000495706.1_1_6:44224232-44225258:-|nuORF;ENST00000337478.2_1_10:106075471-106098072:-|nuORF	ENST00000495706.1_1_6:44224232-44225258:-|nuORF	ENST00000495706.1_1_6:44224232-44225258:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.265625	1	559.247066	558.239789	-0.66292	-0.00037074	-0.31915	-0.00017848	-0.98207	-0.00054922	559.2470664379553	80.258	0.1694	80.28	80.189	80.358	0.021439					5	3	2	0	0	0	0.027866	1	9905	9905		8.2313	0	1	22065			57745	12423	40424	40488	63165	63165					-0.057000949102871346
PGGHTATVL	9	Unmodified	_PGGHTATVL_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.7145080566406	2	426.732335	851.450116	-0.092721	-3.9567E-05	4.0979	0.0017487	4.0052	0.0017092	426.7342538923197	30.547	0.58923	30.303	30.035	30.624	-0.24415					31	13	4	0	0	0	0.024412	1	1970	1970		24.203	2.2429	1	142680			57746	1908	40425	40489	63166	63166					0.01844942691889173
PGGHTATVL	9	Unmodified	_PGGHTATVL_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.732335	851.450116	-0.52937	-0.0002259	1.7501	0.00074681	1.2207	0.00052091	426.7327765024173	30.499	0.25039	30.507	30.331	30.581	0.0086689	0.14582	-0.00053188	NaN	6.7355	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75689			57747	1908	40425	40489							0.01844942691889173
PGGHTATVL	9	Unmodified	_PGGHTATVL_					0	0	0		ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	ENSG00000089486|ENST00000567695|CDIP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.732335	851.450116	-0.59404	-0.00025349	2.1035	0.00089764	1.5095	0.00064415	426.73292649458153	30.2	0.45654	30.274	30.129	30.586	0.074314	-0.087391	-0.00023021	NaN	6.7355	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99237			57748	1908	40425	40489							0.01844942691889173
PGGPLVLEA	9	Unmodified	_PGGPLVLEA_					0	0	0			REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.7145080566406	2	426.744911	851.475269	-0.10457	-4.4626E-05	1.4252	0.00060821	1.3207	0.00056359	426.7451737938672	30.6	0.46041	30.355	30.122	30.582	-0.24415					14	10	2	0	0	0	0.024466	1	1970	1970		25.45	0	1	59251	+		57749	29139	40426	40490	63167	63167					0.04358997494466621
PGGPREAR	8	Unmodified	_PGGPREAR_					0	0	0			REV__ENST00000249373.7_1_7:128828715-128828973:+|nuORF	REV__ENST00000249373.7_1_7:128828715-128828973:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.24072265625	2	420.227751	838.440949	-0.94486	-0.00039706	3.5457	0.00149	2.6009	0.001093	420.2288447986254	37.354	0.38641	37.134	36.885	37.271	-0.2195					16	9	3	0	0	0	0.027866	1	2980	2980		29.842	0	1	253560	+		57750	29488	40427	40491	63168	63168					0.015265941262214255
PGGPWTEP	8	Unmodified	_PGGPWTEP_					0	0	0			REV__ENST00000367242.3_1_1:202976531-202976618:+|nuORF	REV__ENST00000367242.3_1_1:202976531-202976618:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2403259277344	2	420.697961	839.381368	0.17749	7.4668E-05	2.6292	0.0011061	2.8067	0.0011808	420.69907166698016	37.178	0.19094	37.21	37.112	37.303	0.032269					6	4	2	0	0	0	0.027866	1	2956	2956		15.636	7.9459	1	20696	+		57751	31011	40428	40492	63169	63169					-0.0447472160782354
PGGQKSPSKWF	11	Unmodified	_PGGQKSPSKWF_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.87896728515625	3	406.880379	1217.61931	1.3745	0.00055926	-4.3776	-0.0017812	-3.0031	-0.0012219	406.8785851414845	19.621	1.0542	19.621	19.366	20.42	0					59	21	4	0	0	0	0.95317	1	433	433		47.228	0.7709	1	1239200			57752	18205	40429	40493	63170	63170					0.019202192546117658
PGGQKSPSKWF	11	Unmodified	_PGGQKSPSKWF_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.87890625	3	406.880379	1217.61931	0.25194	0.00010251	-3.1616	-0.0012864	-2.9097	-0.0011839	406.8790741365247	19.918	1.2902	19.813	19.509	20.799	-0.10477					72	26	4	0	0	0	0.84303	1	452	452		55.084	6.4824	1	1107600			57753	18205	40429	40493	63171	63171					0.019202192546117658
PGGRAPRP	8	Unmodified	_PGGRAPRP_					0	0	0			REV__ENST00000580513.1_1_17:63554840-63557252:-|nuORF	REV__ENST00000580513.1_1_17:63554840-63557252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.233154296875	2	404.232836	806.45112	1.0198	0.00041225	-1.4334	-0.00057943	-0.41358	-0.00016718	404.2320221194493	84.559	4.1783	84.356	82.19	86.368	-0.20329					189	97	3	0	0	0	1.0572	1	10190	10190		28.254	0	1	18249000	+		57754	35519	40430	40494	63172	63172					0.04015201851461825
PGGRAPRP	8	Unmodified	_PGGRAPRP_					0	0	0			REV__ENST00000580513.1_1_17:63554840-63557252:-|nuORF	REV__ENST00000580513.1_1_17:63554840-63557252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.23211669921875	2	404.232836	806.45112	1.0121	0.00040911	-2.5743	-0.0010406	-1.5622	-0.00063148	404.23139167618297	81.763	1.0642	81.57	81.254	82.318	-0.19334					55	24	3	0	0	0	1.0574	1	9835	9835		20.482	0	1	962360	+		57755	35519	40430	40494	63173	63173					0.04015201851461825
PGGRPPRADA	10	Unmodified	_PGGRPPRADA_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2623291015625	2	497.264865	992.515176	-0.59944	-0.00029808	-3.5436	-0.0017621	-4.143	-0.0020602	497.26295675594787	48.648	6.2116	48.373	45.762	51.974	-0.27598					392	167	4	0	0	0	0.61732	1	4950	4950		75.043	6.2565	1	7013000			57756	2356	40431	40495	63174	63174					0.018619372177454352
PGGVGAPS	8	Unmodified	_PGGVGAPS_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	641.8828735351562	1	641.325316	640.31804	-0.83288	-0.00053415	-2.0431	-0.0013103	-2.8759	-0.0018444	641.323936121998	97.366	0.54517	97.229	96.969	97.514	-0.13671					19	11	2	0	0	0	0.027866	1	12058	12058		9.4706	0	1	47062			57757	4136	40432	40496	63175	63175					-0.01650662325050689
PGGWLRAGT	9	Unmodified	_PGGWLRAGT_					0	0	0		ENST00000402010.6_1_11:63676765-63677272:+|nuORF	ENST00000402010.6_1_11:63676765-63677272:+|nuORF	ENST00000402010.6_1_11:63676765-63677272:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.1558532714844	2	457.745776	913.477	-0.2091	-9.5712E-05	1.0495	0.00048041	0.84042	0.0003847	457.7461649910394	39.933	0.69363	39.703	39.275	39.968	-0.23021					26	17	2	0	0	0	0.024381	1	3403	3403		15.642	0	1	197830			57758	13680	40433	40497	63176	63176					0.016800513030943875
PGHDDGQRPS	10	Unmodified	_PGHDDGQRPS_					0	0	0		nc|ENSG00000147889|Q8N726-2|CDKN2A;nc|ENSG00000147889|Q8N726|CDKN2A	nc|ENSG00000147889|Q8N726-2|CDKN2A	nc|ENSG00000147889|Q8N726-2|CDKN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2412109375	2	533.239044	1064.46353	-0.2285	-0.00012185	3.4942	0.0018632	3.2656	0.0017414	533.24080396962	34.218	0.94058	33.994	33.68	34.621	-0.22412					66	23	4	0	0	0	0.71272	1	2496	2496		66.429	5.4573	1	5360100			57759	18367	40434	40498	63177	63177					-0.0661185126680266
PGHDDGQRPS	10	Unmodified	_PGHDDGQRPS_					0	0	0		nc|ENSG00000147889|Q8N726-2|CDKN2A;nc|ENSG00000147889|Q8N726|CDKN2A	nc|ENSG00000147889|Q8N726-2|CDKN2A	nc|ENSG00000147889|Q8N726-2|CDKN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2412719726562	2	533.239044	1064.46353	-0.68959	-0.00036772	3.9168	0.0020886	3.2272	0.0017209	533.2410467455605	34.061	1.0195	33.854	33.587	34.607	-0.20696					74	25	4	0	0	0	0.71272	1	2472	2472		66.429	8.183	1	6151600			57760	18367	40434	40498	63178	63178					-0.0661185126680266
PGHLPPDV	8	Unmodified	_PGHLPPDV_					0	0	0		nc|ENSG00000160360|Q86YR5-3|GPSM1;nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1	nc|ENSG00000160360|Q86YR5-3|GPSM1;REV__ZNF546|p.F366Kfs*10|1|0.12|ENSG00000187187|chr19:40014364-40014365|-/TAAAGGCTTTCCCACATTCCTTACA|frameshift_variant	nc|ENSG00000160360|Q86YR5-3|GPSM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.7117919921875	2	416.221603	830.428653	-0.16076	-6.6911E-05	0.74062	0.00030826	0.57986	0.00024135	416.21992510169537	25.53	0.41286	25.53	25.324	25.737	0					13	9	2	0	0	0	0.027866	1	1239	1239		20.482	0	1	40735			57761	6810;27921	40435	40499	63179	63179					0.006655576631942495
PGIKKKFFFV	10	Unmodified	_PGIKKKFFFV_					0	0	0			REV__ENST00000560723.5_1_15:81616080-81616440:-|nuORF	REV__ENST00000560723.5_1_15:81616080-81616440:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8721313476562	2	605.870977	1209.7274	-0.92863	-0.00056263	2.6111	0.001582	1.6824	0.0010193	605.8723603924029	98.583	1.08	98.583	98.233	99.313	0					66	24	4	0	0	0	1.1259	1	12585	12585		24.203	3.3656	1	1252900	+		57762	35153	40436	40500	63180	63180					0.13092635575821987
PGIKKKFFFV	10	Unmodified	_PGIKKKFFFV_					0	0	0			REV__ENST00000560723.5_1_15:81616080-81616440:-|nuORF	REV__ENST00000560723.5_1_15:81616080-81616440:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.87060546875	2	605.870977	1209.7274	0.020307	1.2303E-05	1.8348	0.0011117	1.8551	0.001124	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	1.1166	1	12283	12283		30.504	5.0535	1	1147100	+		57763	35153	40436	40500	63181	63181					0.13092635575821987
PGIPRALSL	9	Unmodified	_PGIPRALSL_					0	0	0		ENSG00000157303|ENST00000375472|SUSD3;nc|ENSG00000157303|Q96L08-3|SUSD3;nc|ENSG00000157303|Q96L08-2|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.28759765625	2	462.287277	922.560001	0.75314	0.00034817	-0.25079	-0.00011594	0.50234	0.00023223	462.28721463804175	59.285	0.69884	59.37	59.099	59.798	0.085686					54	18	4	0	0	0	0.33245	1	6698	6698		71.296	0	1	5592900			57764	6589	40437	40501	63182	63182					0.09562368031083679
PGIQNNERLTH	11	Unmodified	_PGIQNNERLTH_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7404479980469	3	426.889825	1277.64765	-0.1939	-8.2772E-05	-1.4413	-0.00061526	-1.6352	-0.00069803	426.88909505527636	22.182	0.79036	21.997	21.764	22.554	-0.18539					33	16	4	0	0	0	0.024771	1	796	796		56.632	34.852	1	269900	+		57765	22745	40438	40502	63183	63183					0.01992917163875063
PGIVELPT	8	Unmodified	_PGIVELPT_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.23779296875	2	413.239461	824.46437	0.70486	0.00029127	-3.2249	-0.0013327	-2.5201	-0.0010414	413.23803468706404	89.794	1.1563	89.772	89.409	90.566	-0.021645					67	27	4	0	0	0	1.0572	2	11329	11315;11329		28.254	1.4582	1	1921700			57766	3738	40439	40503	63184;63185	63185					0.04511595120175116
PGKFCLLVC	9	Unmodified	_PGKFCLLVC_					0	0	0		nc|ENSG00000154153|Q9H6L5-2|RETREG1;ENSG00000154153|ENST00000306320|RETREG1	nc|ENSG00000154153|Q9H6L5-2|RETREG1	nc|ENSG00000154153|Q9H6L5-2|RETREG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2578430175781	2	490.258816	978.50308	-0.12543	-6.1494E-05	-1.6725	-0.00081998	-1.798	-0.00088148	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.88411	1	13448	13448		33.516	0.022601	1	7056700			57767	6388	40440	40504	63186	63186					0.01296861158698448
PGKGARTASL	10	Unmodified	_PGKGARTASL_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2779235839844	2	479.277441	956.540328	-0.48842	-0.00023409	3.4651	0.0016607	2.9767	0.0014266	479.2796754108199	81.053	2.622	80.922	79.525	82.147	-0.13075					131	63	4	0	0	0	1.0236	1	10075	10075		42.864	0.46813	1	1507900			57768	7853	40441	40505	63187	63187					0.06031992020314192
PGKGARTASL	10	Unmodified	_PGKGARTASL_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2777099609375	2	479.277441	956.540328	0.51465	0.00024666	-0.27369	-0.00013117	0.24097	0.00011549	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	1.0344	1	10293	10293		41.427	5.8083	1	4752300			57769	7853	40441	40505	63188	63188					0.06031992020314192
PGKGARTASL	10	Unmodified	_PGKGARTASL_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2775573730469	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	1.0236	2	10489	10294;10489		42.864	3.6114	1	4947400			57770	7853	40441	40505	63189;63190	63190					0.06031992020314192
PGKHRTVG	8	Unmodified	_PGKHRTVG_					0	0	0		ENST00000486327.6_1_19:47884337-47884637:+|nuORF	ENST00000486327.6_1_19:47884337-47884637:+|nuORF	ENST00000486327.6_1_19:47884337-47884637:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2459716796875	2	426.245944	850.477334	0.26941	0.00011483	0.022771	9.706E-06	0.29218	0.00012454	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	1.0338	1	10598	10598		31.955	1.4512	1	14269000			57771	15344	40442	40506	63191	63191					0.046114710229517186
PGKIVTSEGSS	11	Unmodified	_PGKIVTSEGSS_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.292236328125	2	531.277303	1060.54005	-0.58105	-0.0003087	-4.4198	-0.0023481	-5.0008	-0.0026568	531.2748842700823	30.098	0.63937	29.853	29.482	30.122	-0.24415					24	14	2	0	0	0	0.024747	1	1871	1871		18.262	0	1	369630			57772	1315	40443	40507	63192	63192					0.01220527509826752
PGKKLENN	8	Unmodified	_PGKKLENN_					0	0	0			REV__ENSG00000153066|ENST00000283033|TXNDC11	REV__ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2747497558594	2	450.250892	898.48723	0.17004	7.6562E-05	-4.2496	-0.0019134	-4.0795	-0.0018368	450.248007380405	92.586	0.29681	92.594	92.461	92.758	0.0077286					10	6	2	0	0	0	0.027866	1	11676	11676		42.396	15.6	1	29816	+		57773	24883	40444	40508	63193	63193					0.0339261423764583
PGKKVEPVPVT	11	Unmodified	_PGKKVEPVPVT_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8428955078125	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0017	1	11250	11250		36.447	8.3653	1	5880000			57774	4214	40445	40509	63194	63194					0.10690847091268552
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.27435302734375	2	450.274701	898.534849	-0.35559	-0.00016011	-0.72196	-0.00032508	-1.0775	-0.00048519	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	1.043	3	11702	11644;11702;11726		30.504	3.8107	1	67958000	+		57775	32593	40446	40510	63195;63196;63197	63196					0.08152313228504227
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2745056152344	2	450.274701	898.534849	-0.17068	-7.6855E-05	-0.93719	-0.00042199	-1.1079	-0.00049885	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	0.95679	5	11626	11626;11638;11661;11673;11746		44.117	13.658	1	67707000	+		57776	32593	40446	40510	63198;63199;63200;63201;63202	63198					0.08152313228504227
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2744140625	2	450.274701	898.534849	0.37578	0.0001692	-1.4515	-0.00065358	-1.0757	-0.00048437	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	0.99042	6	11568	11568;11578;11602;11626;11650;11676		38.806	7.4612	1	69580000	+		57777	32593	40446	40510	63203;63204;63205;63206;63207;63208	63203					0.08152313228504227
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.27435302734375	2	450.274701	898.534849	-1.3767	-0.00061991	0.3574	0.00016093	-1.0193	-0.00045898	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	0.99042	6	11341	11305;11341;11365;11391;11404;11416		38.806	9.6566	1	56225000	+		57778	32593	40446	40510	63209;63210;63211;63212;63213;63214	63210					0.08152313228504227
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2744445800781	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	1.043	3	11310	11310;11355;11367		30.504	2.2494	1	55183000	+		57779	32593	40446	40510	63215;63216;63217	63215					0.08152313228504227
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.2746276855469	2	450.274701	898.534849	0.10472	4.7152E-05	-1.1606	-0.00052261	-1.0559	-0.00047546	450.27420091803094	92.333	2.0403	92.192	91.748	93.788	-0.14131					175	47	6	0	0	0	0.95679	5	11352	11293;11304;11316;11352;11364		44.117	14.967	1	53243000	+		57780	32593	40446	40510	63218;63219;63220;63221;63222	63221					0.08152313228504227
PGKPILPVQTG	11	Unmodified	_PGKPILPVQTG_					0	0	0		ENST00000489787.1_1_20:48429459-48431791:+|nuORF;ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8299560546875	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0392	1	11212	11212		28.081	0.19925	1	4870500			57781	10051	40447	40511	63223	63223					0.10094577919812764
PGKPILPVQTG	11	Unmodified	_PGKPILPVQTG_					0	0	0		ENST00000489787.1_1_20:48429459-48431791:+|nuORF;ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8296508789062	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0392	1	11184	11184		28.081	0.19925	1	4967900			57782	10051	40447	40511	63224	63224					0.10094577919812764
PGKPILPVQTG	11	Unmodified	_PGKPILPVQTG_					0	0	0		ENST00000489787.1_1_20:48429459-48431791:+|nuORF;ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8310546875	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.0183	1	11040	11040		32.751	1.2207	1	6921700			57783	10051	40447	40511	63225	63225					0.10094577919812764
PGKQLRHLGK	10	Unmodified	_PGKQLRHLGK_					0	0	0			REV__ENSG00000168447|ENST00000343070|SCNN1B	REV__ENSG00000168447|ENST00000343070|SCNN1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3297729492188	2	567.348732	1132.68291	-1.4831	-0.00084141	3.1626	0.0017943	1.6796	0.0009529	567.3516661228095	91.826	0.38913	91.677	91.612	92.001	-0.1487					14	8	2	0	0	0	0.03519	1	11269	11269		26.693	0	1	39958	+		57784	26260	40448	40512	63226	63226					0.1218762448236248
PGKRGLSL	8	Unmodified	_PGKRGLSL_					0	0	0		ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.25872802734375	2	414.25852	826.502486	-0.27187	-0.00011262	0.91574	0.00037935	0.64388	0.00026673	414.25876186773087	23.422	0.90209	23.498	23.234	24.136	0.076241					43	20	3	0	0	0	0.74904	1	878	878		63.306	7.8021	1	564650			57785	10238	40449	40513	63227	63227					0.08229525825527162
PGKRGLSL	8	Unmodified	_PGKRGLSL_					0	0	0		ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	414.25852	826.502486	0.36011	0.00014918	0.31291	0.00012962	0.67302	0.0002788	414.2585209553775	23.504	0.83467	23.504	23.245	24.08	0	0.17513	-0.00024851	NaN	63.306	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580770			57786	10238	40449	40513							0.08229525825527162
PGKRGLSL	8	Unmodified	_PGKRGLSL_					0	0	0		ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	414.25852	826.502486	0.20953	8.6802E-05	-0.36737	-0.00015219	-0.15784	-6.5386E-05	414.2583763061043	23.303	0.62407	23.101	22.733	23.358	-0.20193	-0.22787	-0.00081214	NaN	63.306	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50352			57787	10238	40449	40513							0.08229525825527162
PGKRGLSL	8	Unmodified	_PGKRGLSL_					0	0	0		ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	414.25852	826.502486	-0.46428	-0.00019233	0.93798	0.00038857	0.4737	0.00019623	414.25876930453626	23.281	0.44434	23.101	22.836	23.281	-0.17989	-0.22792	0.00026937	NaN	63.306	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91548			57788	10238	40449	40513							0.08229525825527162
PGKRPLPVK	9	Unmodified	_PGKRPLPVK_					0	0	0		KLF3|p.E249K|1|0.12|ENSG00000109787|chr4:38694795-38694795|G/A|missense_variant	KLF3|p.E249K|1|0.12|ENSG00000109787|chr4:38694795-38694795|G/A|missense_variant	KLF3|p.E249K|1|0.12|ENSG00000109787|chr4:38694795-38694795|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2956848144531	2	496.324194	990.633835	-0.24004	-0.00011914	-3.464	-0.0017193	-3.7041	-0.0018384	496.32271115718237	41.313	0.38789	41.085	40.888	41.275	-0.2278					10	9	2	0	0	0	0.024457	1	3637	3637		45.952	20.502	1	98389			57789	17804	40450	40514	63228	63228					0.13814336193399868
PGKRQEEGT	9	Unmodified	_PGKRQEEGT_					0	0	0			REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29046630859375	2	501.254163	1000.49377	0.17224	8.6336E-05	2.4196	0.0012128	2.5918	0.0012992	501.2554724318077	86.44	0.21812	86.253	86.167	86.385	-0.18696					6	4	2	0	0	0	0.024447	1	10501	10501		40.778	0	1	23569	+		57790	34134	40451	40515	63229	63229					-0.006454926016203899
PGKSAPDLPA	10	Unmodified	_PGKSAPDLPA_					0	0	0			REV__ENST00000371429.3_1_1:54304109-54304364:-|nuORF	REV__ENST00000371429.3_1_1:54304109-54304364:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7590026855469	2	476.758549	951.502546	0.43743	0.00020855	-1.8565	-0.00088511	-1.4191	-0.00067656	476.7577688912986	100.79	1.7036	100.66	100.4	102.11	-0.12569					69	44	2	0	0	0	1.1286	1	12523	12523		25.574	1.3713	1	198430	+		57791	31160	40452	40516	63230	63230					0.024854810348301726
PGKSAPDLPA	10	Unmodified	_PGKSAPDLPA_					0	0	0			REV__ENST00000371429.3_1_1:54304109-54304364:-|nuORF	REV__ENST00000371429.3_1_1:54304109-54304364:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7578430175781	2	476.758549	951.502546	0.38446	0.00018329	-1.6457	-0.00078461	-1.2613	-0.00060132	476.75766316682655	103.71	1.8057	103.54	102.91	104.72	-0.16791					135	46	4	0	0	0	1.0002	1	12903	12903		45.972	11.8	1	2252400	+		57792	31160	40452	40516	63231	63231					0.024854810348301726
PGKVHITK	8	Unmodified	_PGKVHITK_					0	0	0		ENSG00000164742|ENST00000297323|ADCY1;ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2617492675781	2	440.27417	878.533787	2.2856	0.0010063	-4.3889	-0.0019323	-2.1033	-0.00092604	440.2726056977008	19.785	0.2339	19.851	19.735	19.969	0.066195					6	4	2	0	0	0	0.027866	1	413	413		37.159	0	1	11176			57793	7314	40453	40517	63232	63232					0.08966098859593785
PGLEGLLL	8	Unmodified	_PGLEGLLL_					0	0	0			REV__ENSG00000075826|ENST00000370345|SEC31B	REV__ENSG00000075826|ENST00000370345|SEC31B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2488098144531	2	406.249829	810.485105	0.91381	0.00037124	-4.0137	-0.0016306	-3.0999	-0.0012593	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0133	1	10791	10791		35.201	1.6851	1	86727000	+		57794	20557	40454	40518	63233	63233					0.07228185499855044
PGLLFPKKP	9	Unmodified	_PGLLFPKKP_					0	0	0			REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7795104980469	2	498.81567	995.616788	-0.6148	-0.00030667	-3.332	-0.0016621	-3.9468	-0.0019687	498.813675452064	32.656	0.48281	32.668	32.45	32.933	0.011799					21	12	2	0	0	0	0.024262	1	2291	2291		23.042	10.836	1	180460	+		57795	21672	40455	40519	63234	63234					0.11880415587597781
PGLLFPKKP	9	Unmodified	_PGLLFPKKP_					0	0	0			REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7795715332031	2	498.81567	995.616788	0.05143	2.5654E-05	-4.0405	-0.0020155	-3.9891	-0.0019898	498.81332889023946	32.585	0.49213	32.648	32.352	32.845	0.062889					19	12	2	0	0	0	0.024354	1	2240	2240		38.806	8.3025	1	171250	+		57796	21672	40455	40519	63235	63235					0.11880415587597781
PGLLLPLSQPG	11	Unmodified	_PGLLLPLSQPG_					0	0	0			REV__ENSG00000146094|ENST00000510898|DOK3	REV__ENSG00000146094|ENST00000510898|DOK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3270874023438	2	546.326599	1090.63865	-0.89576	-0.00048938	1.4143	0.00077265	0.5185	0.00028327	546.3269119517198	41.973	0.3395	41.84	41.678	42.017	-0.1322					16	9	2	0	0	0	0.024787	1	3817	3817		67.494	14.557	1	144820	+		57797	24460	40456	40520	63236	63236					0.09695175545516577
PGLLLPLSQPG	11	Unmodified	_PGLLLPLSQPG_					0	0	0			REV__ENSG00000146094|ENST00000510898|DOK3	REV__ENSG00000146094|ENST00000510898|DOK3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.326599	1090.63865	-0.36833	-0.00020123	0.38994	0.00021303	0.021611	1.1806E-05	546.3266564471357	41.728	0.34216	41.728	41.579	41.921	0	-0.13789	-0.00041305	NaN	67.494	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147330	+		57798	24460	40456	40520							0.09695175545516577
PGLLLPLSQPG	11	Unmodified	_PGLLLPLSQPG_					0	0	0			REV__ENSG00000146094|ENST00000510898|DOK3	REV__ENSG00000146094|ENST00000510898|DOK3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.326599	1090.63865	-0.82506	-0.00045075	0.85664	0.00046801	0.031584	1.7255E-05	546.3266012296571	42.002	0.30409	42.028	41.784	42.088	0.026016	0.16301	9.6898E-05	NaN	67.494	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162950	+		57799	24460	40456	40520							0.09695175545516577
PGLLVHPD	8	Unmodified	_PGLLVHPD_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.8623046875	2	424.237253	846.459953	0.19021	8.0695E-05	2.6362	0.0011184	2.8264	0.0011991	424.2384200763061	29.988	0.25534	29.839	29.668	29.923	-0.14952					7	5	2	0	0	0	0.027866	1	1849	1849		40.573	24.099	1	33568			57800	2971	40457	40521	63237	63237					0.03058130697274919
PGLPIPWDTT	10	Unmodified	_PGLPIPWDTT_					0	0	0		Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|33|2|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|33|2|sense	Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|33|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.8262329101562	2	548.787307	1095.56006	-0.3848	-0.00021117	-4.1845	-0.0022964	-4.5693	-0.0025076	548.7835683179371	94.641	0.17242	94.493	94.369	94.541	-0.14771					6	3	2	0	0	0	0.03519	1	11650	11650		23.042	7.4007	1	33446			57801	38072	40458	40522	63238	63238					0.016103232404020673
PGLPMFPS	8	Unmodified	_PGLPMFPS_					0	0	0		ENST00000591607.1_1_19:45593773-45593926:+|nuORF	ENST00000591607.1_1_19:45593773-45593926:+|nuORF	ENST00000591607.1_1_19:45593773-45593926:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.2380065917969	2	423.214932	844.415311	0.52616	0.00022268	4.3155	0.0018264	4.8416	0.002049	423.2165126516041	32.622	0.53254	32.429	32.205	32.738	-0.19261					24	12	3	0	0	0	0.027866	1	2303	2303		20.482	0	1	163890			57802	17359	40459	40523	63239	63239					-0.013120164404085699
PGLVPFPP	8	Unmodified	_PGLVPFPP_					0	0	0			REV__ENST00000506575.1_1_3:98240550-98241439:-|nuORF	REV__ENST00000506575.1_1_3:98240550-98241439:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5632019042969	2	412.239264	822.463976	-0.15541	-6.4067E-05	0.63567	0.00026205	0.48026	0.00019798	412.2408072022378	32.381	0.16592	32.224	32.079	32.245	-0.15772					5	3	2	0	0	0	0.027866	1	2208	2208		5.0869	0	1	17410	+		57803	34031	40460	40524	63240	63240					0.04564220190991364
PGNLTRTLSQA	11	Unmodified	_PGNLTRTLSQA_					0	0	0		ENST00000553027.1_1_12:49317517-49317670:-|nuORF;ENST00000546671.5_1_12:49317517-49318461:-|nuORF	ENST00000553027.1_1_12:49317517-49317670:-|nuORF	ENST00000553027.1_1_12:49317517-49317670:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.317138671875	2	579.317294	1156.62004	0.015055	8.7219E-06	-0.28361	-0.0001643	-0.26856	-0.00015558	579.317049554055	24.214	0.91045	24.292	23.912	24.823	0.078344					51	19	4	0	0	0	0.82076	1	980	980		56.434	6.8977	1	943090			57804	16512	40461	40525	63241	63241					0.04799013903675586
PGNPLRHP	8	Unmodified	_PGNPLRHP_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.2449645996094	2	444.245944	886.477334	0.28073	0.00012471	-1.215	-0.00053974	-0.93423	-0.00041503	444.24547325776797	102.85	1.105	102.85	102.55	103.65	-0.0046082					64	26	5	0	0	0	1.0338	1	13134	13134		31.955	0.42505	1	8156500			57805	3223	40462	40526	63242	63242					0.029554710229376724
PGPGAGVG	8	Unmodified	_PGPGAGVG_					0	0	0		ENST00000300682.14_2_17:77082467-77082989:+|nuORF	ENST00000300682.14_2_17:77082467-77082989:+|nuORF	ENST00000300682.14_2_17:77082467-77082989:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	611.3560791015625	1	611.314751	610.307475	-1.5318	-0.00093644	1.707	0.0010435	0.17519	0.0001071	611.3195653216715	94.284	0.19396	94.29	94.131	94.325	0.0059814					6	4	2	0	0	0	0.027866	1	11909	11909		10.185	0	1	21333			57806	11908	40463	40527	63243	63243					-0.013266449794741675
PGPGKRGR	8	Unmodified	_PGPGKRGR_					0	0	0			REV__ENSG00000154146|ENST00000284292|NRGN	REV__ENSG00000154146|ENST00000284292|NRGN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.74609375	2	412.746111	823.477669	0.79299	0.0003273	-0.57068	-0.00023554	0.22231	9.176E-05	412.7457786960996	84.338	1.9792	84.338	83.605	85.584	0					109	46	5	0	0	0	1.0574	1	10568	10568		19.36	1.0356	1	6308600	+		57807	24942	40464	40528	63244	63244					0.05886890742806372
PGPGRRLARL	10	Unmodified	_PGPGRRLARL_					0	0	0			REV__ENSG00000197912|ENST00000645818|SPG7	REV__ENSG00000197912|ENST00000645818|SPG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.8405151367188	2	546.841074	1091.66759	0.3982	0.00021775	-2.0973	-0.0011469	-1.6991	-0.00092914	546.8399841843885	99.748	1.3784	99.613	99.184	100.56	-0.13526					99	37	6	0	0	0	1.1056	2	12399	12376;12399		31.955	2.8053	1	10192000	+		57808	28363	40465	40529	63245;63246	63246					0.12542757685173456
PGPLKRSL	8	Unmodified	_PGPLKRSL_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2514953613281	2	434.27417	866.533787	0.57441	0.00024945	2.4204	0.0010511	2.9948	0.0013006	434.27453362357926	92.161	2.0558	92.02	90.861	92.917	-0.14131					71	48	2	0	0	0	0.027866	1	11313	11313		29.15	7.1897	1	89456			57809	6684	40466	40530	63247	63247					0.09518098859598467
PGPLLMVE	8	Unmodified	_PGPLLMVE_					0	0	0			REV__ENST00000425268.5_2_2:70409910-70418013:-|nuORF	REV__ENST00000425268.5_2_2:70409910-70418013:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2195739746094	2	428.235864	854.457176	0.16819	7.2027E-05	-0.68928	-0.00029517	-0.52108	-0.00022315	428.23746702426524	27.491	0.71087	27.334	26.974	27.685	-0.15664					41	16	4	0	0	0	0.027866	1	1515	1515		13.775	0	1	337920	+		57810	32247	40467	40531	63248	63248					0.02412539248120993
PGPLSVNSL	9	Unmodified	_PGPLSVNSL_					0	0	0			REV__nc|ENSG00000115825|O94806-2|PRKD3	REV__nc|ENSG00000115825|O94806-2|PRKD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.23553466796875	2	442.247818	882.481082	-0.014983	-6.6261E-06	-4.0792	-0.001804	-4.0942	-0.0018107	442.246135512972	33.854	0.11849	33.85	33.79	33.908	-0.0045624					4	2	2	0	0	0	0.023775	1	2467	2467		68.485	2.0554	1	70919	+		57811	22232	40468	40532	63249	63249					0.0351409600613124
PGPQAPAAH	9	Unmodified	_PGPQAPAAH_					0	0	0			REV__nc|ENSG00000175416|P09497-2|CLTB	REV__nc|ENSG00000175416|P09497-2|CLTB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.23779296875	2	423.216852	844.419151	-0.77323	-0.00032725	1.1752	0.00049736	0.40196	0.00017012	423.2171335283594	32.583	0.56491	32.583	32.3	32.865	0					29	14	3	0	0	0	0.024357	1	2303	2303		26.796	0	1	403510	+		57812	26948	40469	40533	63250	63250					-0.00928210622350889
PGPRARQPQ	9	Unmodified	_PGPRARQPQ_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2963562011719	2	503.780682	1005.54681	1.6655	0.00083904	-1.8185	-0.00091614	-0.15304	-7.7097E-05	503.77975381214696	18.843	0.49243	18.843	18.577	19.07	0					11	8	2	0	0	0	0.024487	1	311	311		40.573	1.7665	1	45428			57813	6803	40470	40534	63251	63251					0.044259299717055
PGPRARQPQ	9	Unmodified	_PGPRARQPQ_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.780682	1005.54681	0.3336	0.00016806	-1.366	-0.00068817	-1.0324	-0.00052011	503.77991865683083	18.873	0.29731	18.67	18.51	18.807	-0.20371	-0.086809	0.00036015	NaN	40.573	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105590			57814	6803	40470	40534							0.044259299717055
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.6242370605469	3	467.62386	1399.84975	0.98972	0.00046281	-1.2162	-0.00056874	-0.22651	-0.00010592	467.6232186790615	106.95	0.65829	106.95	106.77	107.43	0					56	18	5	0	0	0	1.0563	1	13730	13730		23.378	2.3457	1	698760	+		57815	22251	40471	40535	63252	63252					0.16581910150625845
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.6239929199219	3	467.62386	1399.84975	0.3269	0.00015287	-0.55094	-0.00025763	-0.22404	-0.00010476	467.6235691549318	106.94	0.72211	106.94	106.72	107.44	-0.003479					44	23	4	0	0	0	1.0371	1	13699	13699		28.577	6.0151	1	488480	+		57816	22251	40471	40535	63253	63253					0.16581910150625845
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.6239318847656	3	467.62386	1399.84975	0.094959	4.4405E-05	-0.28969	-0.00013547	-0.19473	-9.1062E-05	467.62365324391635	107.08	0.60744	106.96	106.74	107.35	-0.12381					60	20	4	0	0	0	1.0712	1	13340	13340		19.263	5.1767	1	609420	+		57817	22251	40471	40535	63254	63254					0.16581910150625845
PGPRRPRRPRR	11	Unmodified	_PGPRRPRRPRR_					0	0	0			REV__ENSG00000116014|ENST00000234371|KISS1R	REV__ENSG00000116014|ENST00000234371|KISS1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.6241760253906	3	467.62386	1399.84975	0.37526	0.00017548	-0.61132	-0.00028587	-0.23606	-0.00011039	467.6235097930596	107.2	0.48961	107.05	106.83	107.32	-0.15771					55	18	4	0	0	0	1.0739	1	13296	13296		18.531	0	1	578270	+		57818	22251	40471	40535	63255	63255					0.16581910150625845
PGQFLSSVPL	10	Unmodified	_PGQFLSSVPL_					0	0	0			REV__ENST00000505061.5_1_15:42111671-42117631:+|nuORF	REV__ENST00000505061.5_1_15:42111671-42117631:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3035278320312	2	522.78985	1043.56515	0.55917	0.00029233	-2.4175	-0.0012639	-1.8584	-0.00097153	522.7895094748776	88.185	0.54781	88.204	87.948	88.496	0.018555					14	12	2	0	0	0	0.03519	1	11069	11069		24.519	0	1	59032	+		57819	23782	40472	40536	63256	63256					0.04510627103036313
PGQIVKKP	8	Unmodified	_PGQIVKKP_					0	0	0		ENSG00000136999|ENST00000259526|CCN3	ENSG00000136999|ENST00000259526|CCN3	ENSG00000136999|ENST00000259526|CCN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.9144287109375	2	433.776545	865.538538	-0.017885	-7.7581E-06	0.26106	0.00011324	0.24318	0.00010549	433.7763874731727	41.466	0.5307	41.33	41.099	41.629	-0.13553					19	13	2	0	0	0	0.027866	1	3686	3686		24.203	3.7209	1	91411			57820	5080	40473	40537	63257	63257					0.10038983002368695
PGQKEKRVRP	10	Unmodified	_PGQKEKRVRP_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	597.856921	1193.69929	-1.1131	-0.00066547	0.73775	0.00044107	-0.37534	-0.0002244	598.3593015087366	90.895	2.4279	90.77	89.373	91.801	-0.12512					145	57	3	0	0	0	1.0508	1	11111	11111		39.253	4.1008	1	2839900			57821	7720	40474	40538	63258	63258					0.11018705648439209
PGQKEKRVRP	10	Unmodified	_PGQKEKRVRP_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	597.856921	1193.69929	-0.56215	-0.00033608	-0.78641	-0.00047016	-1.3486	-0.00080624	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	1.118	1	11469	11469		30.318	0	1	5880700			57822	7720	40474	40538	63259	63259					0.11018705648439209
PGQKKAER	8	Unmodified	_PGQKKAER_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2641296386719	2	457.264333	912.514114	0.17052	7.7972E-05	-0.16769	-7.6678E-05	0.0028298	1.2939E-06	457.26418172468357	78.803	2.5833	78.647	77.361	79.944	-0.15591					144	60	5	0	0	0	1.0516	1	9423	9423		29.15	3.5755	1	998950	+		57823	21134	40475	40539	63260	63260					0.054357228488470355
PGQKVPRN	8	Unmodified	_PGQKVPRN_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2585144042969	2	448.259051	894.503549	0.20031	8.9789E-05	-0.47015	-0.00021075	-0.26985	-0.00012096	448.25872211244354	89.189	1.6752	89.051	88.482	90.157	-0.13761					97	39	4	0	0	0	0.97924	1	10927	10927		40.573	11.423	1	8594700			57824	1235	40476	40540	63261	63261					0.05207740194418875
PGQVARKN	8	Unmodified	_PGQVARKN_					0	0	0			REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25177001953125	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0574	2	9429	9429;9452		25.45	3.4903	1	2257900	+		57825	21312	40477	40541	63262;63263	63262					0.048394536773685104
PGQVARKN	8	Unmodified	_PGQVARKN_					0	0	0			REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.25164794921875	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0239	6	9348	9348;9370;9479;9526;9538;9646		33.516	3.0119	1	2292300	+		57826	21312	40477	40541	63264;63265;63266;63267;63268;63269	63264					0.048394536773685104
PGQVARKN	8	Unmodified	_PGQVARKN_					0	0	0			REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	REV__nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25115966796875	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0239	1	9487	9487		33.516	8.0654	1	1872200	+		57827	21312	40477	40541	63270	63270					0.048394536773685104
PGQVGKPGR	9	Unmodified	_PGQVGKPGR_					0	0	0			REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	REV__nc|ENSG00000215018|Q2UY09-2|COL28A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2588806152344	2	448.259051	894.503549	0.74944	0.00033594	-0.89695	-0.00040207	-0.14751	-6.6124E-05	448.2585106257318	89.09	1.8304	89.069	88.61	90.44	-0.021645					94	43	4	0	0	0	0.96322	1	11211	11211		27.882	3.6795	1	7259500	+		57828	28797	40478	40542	63271	63271					0.05207740194418875
PGRALASH	8	Unmodified	_PGRALASH_					0	0	0		ENST00000371482.5_2_9:140348265-140349052:-|nuORF	ENST00000371482.5_2_9:140348265-140349052:-|nuORF	ENST00000371482.5_2_9:140348265-140349052:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7189025878906	2	404.724844	807.435135	1.8981	0.00076822	0.68458	0.00027707	2.5827	0.0010453	404.7252485485188	73.07	0.62531	73.08	72.777	73.402	0.0096512					32	15	3	0	0	0	0.027866	1	8836	8836		31.955	6.5047	1	1595500			57829	12996	40479	40543	63272	63272					0.023714956145681754
PGRGKIKR	8	Unmodified	_PGRGKIKR_					0	0	0			REV__PPIG|p.S329Y|1|0.2|ENSG00000138398|chr2:169633216-169633216|C/A|missense_variant	REV__PPIG|p.S329Y|1|0.2|ENSG00000138398|chr2:169633216-169633216|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2585144042969	2	456.29851	910.582468	-0.091306	-4.1663E-05	-3.8636	-0.001763	-3.9549	-0.0018046	456.29699839833984	32.234	0.41469	32.297	32.125	32.54	0.062885					13	10	2	0	0	0	0.027866	1	2153	2153		40.573	15.122	1	70884	+		57830	37395	40480	40544	63273	63273					0.1236001221936931
PGRGRTPL	8	Unmodified	_PGRGRTPL_					0	0	0		ENST00000609548.1_1_4:1161591-1161780:+|nuORF	ENST00000609548.1_1_4:1161591-1161780:+|nuORF	ENST00000609548.1_1_4:1161591-1161780:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.25384521484375	2	427.253769	852.492984	-0.58472	-0.00024982	0.18764	8.0168E-05	-0.39709	-0.00016966	427.2539224512093	23.349	2.0442	23.288	22.52	24.564	-0.06086					112	46	4	0	0	0	0.88442	1	883	883		52.299	0	1	17423000			57831	17607	40481	40545	63274	63274					0.0608375753998871
PGRKGISL	8	Unmodified	_PGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.2587890625	2	414.25852	826.502486	-0.22809	-9.4487E-05	0.86632	0.00035888	0.63824	0.0002644	414.25876120581773	23.5	0.87864	23.44	23.152	24.03	-0.060862					41	20	3	0	0	0	1.0338	1	935	935		31.955	0	1	557370			57832	3289	40482	40546	63275	63275					0.08229525825527162
PGRKVRNI	8	Unmodified	_PGRKVRNI_					0	0	0		ENST00000593438.1_1_7:27155866-27156094:+|nuORF	ENST00000593438.1_1_7:27155866-27156094:+|nuORF	ENST00000593438.1_1_7:27155866-27156094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.29595947265625	2	470.295968	938.577383	2.5609	0.0012044	-3.2265	-0.0015174	-0.66562	-0.00031304	470.2945978495062	18.552	1.1784	18.552	18.284	19.463	0					56	23	4	0	0	0	0.91239	1	317	317		50.025	2.1089	1	4513700			57833	17391	40483	40547	63276	63276					0.10563708356744428
PGRLVRGP	8	Unmodified	_PGRLVRGP_					0	0	0		ENST00000407595.2_1_2:56411641-56419673:+|nuORF	ENST00000407595.2_1_2:56411641-56419673:+|nuORF	ENST00000407595.2_1_2:56411641-56419673:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2349548339844	2	426.264136	850.51372	-0.3508	-0.00014953	2.156	0.00091902	1.8052	0.00076949	426.26483162675703	27.617	0.59032	27.698	27.534	28.124	0.081291					28	14	3	0	0	0	0.027866	1	1492	1492		14.664	0	1	277960			57834	13750	40484	40548	63277	63277					0.08248347919663956
PGRPGLTL	8	Unmodified	_PGRPGLTL_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.7451171875	2	405.745245	809.475937	0.82292	0.00033389	-0.98495	-0.00039964	-0.16203	-6.5744E-05	405.74489255377216	45.461	1.8866	45.461	45.043	46.93	0					131	53	5	0	0	0	0.43637	5	4423	4399;4423;4435;4447;4459		92.191	8.9034	1	47129000			57835	18178	40485	40549	63278;63279;63280;63281;63282	63279					0.06357836934171246
PGRPGLTL	8	Unmodified	_PGRPGLTL_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	2	405.745245	809.475937	0.018192	7.3814E-06	-0.17367	-7.0465E-05	-0.15547	-6.3083E-05	405.74522775332235	45.548	2.0127	45.396	45.041	47.054	-0.15154					123	56	4	0	0	0	0.39824	6	4405	4383;4393;4405;4430;4442;4455		97.473	8.9034	1	52703000			57836	18178	40485	40549	63283;63284;63285;63286;63287;63288	63285					0.06357836934171246
PGRPGLTL	8	Unmodified	_PGRPGLTL_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.7449645996094	2	405.745245	809.475937	1.5373	0.00062374	-0.82025	-0.00033281	0.71703	0.00029093	405.7446313913963	45.406	2.3016	45.45	44.966	47.267	0.043877					142	65	5	0	0	0	0.39824	5	4372	4337;4360;4372;4384;4396		97.473	8.9034	1	48799000			57837	18178	40485	40549	63289;63290;63291;63292;63293	63291					0.06357836934171246
PGRPHLPTK	9	Unmodified	_PGRPHLPTK_					0	0	0		ENST00000299882.9_1_11:113576954-113577077:-|nuORF	ENST00000299882.9_1_11:113576954-113577077:-|nuORF	ENST00000299882.9_1_11:113576954-113577077:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.79681396484375	2	501.795801	1001.57705	-0.76192	-0.00038233	3.6313	0.0018222	2.8694	0.0014399	501.79745023381787	38.561	0.75866	38.561	38.247	39.006	0					48	19	4	0	0	0	0.80003	1	3268	3268		39.253	0.44669	1	5240500			57838	11891	40486	40550	63294	63294					0.07632288636887097
PGRPPPPPP	9	Unmodified	_PGRPPPPPP_					0	0	0			REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF	REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2584228515625	2	456.25852	910.502486	-0.074755	-3.4108E-05	-0.37108	-0.00016931	-0.44584	-0.00020342	456.2583876450436	32.48	3.75	32.48	31.343	35.093	0					278	97	3	0	0	0	0.15889	2	2359	2225;2359		97.473	0	1	17591000	+		57839	33915	40487	40551	63295;63296	63296					0.04365525825505756
PGRPPPPPP	9	Unmodified	_PGRPPPPPP_					0	0	0			REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF	REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2586364746094	2	456.25852	910.502486	-0.36043	-0.00016445	-0.15612	-7.123E-05	-0.51655	-0.00023568	456.25850296783176	32.466	3.7606	32.477	31.214	34.975	0.011795					259	97	3	0	0	0	0.15889	1	2263	2263		97.473	5.2821	1	19003000	+		57840	33915	40487	40551	63297	63297					0.04365525825505756
PGRPPPPPP	9	Unmodified	_PGRPPPPPP_					0	0	0			REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF	REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.25823974609375	2	456.25852	910.502486	0.10015	4.5696E-05	-0.56547	-0.000258	-0.46532	-0.0002123	456.258324860341	32.29	4.0779	32.353	30.991	35.069	0.062885					273	104	3	0	0	0	0.074956	6	2249	2128;2153;2188;2212;2225;2249		119.56	18.345	1	17962000	+		57841	33915	40487	40551	63298;63299;63300;63301;63302;63303	63303					0.04365525825505756
PGRRGTVDR	9	Unmodified	_PGRRGTVDR_					0	0	0		ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.28338623046875	2	507.283589	1012.55262	0.06711	3.4044E-05	-0.53987	-0.00027387	-0.47276	-0.00023983	507.28339323117126	18.508	1.1808	18.376	18.105	19.286	-0.13147					54	23	5	0	0	0	0.67687	1	289	289		47.657	0	1	2784200			57842	12615	40488	40552	63304	63304					0.046850284833681144
PGRRVLGG	8	Unmodified	_PGRRVLGG_					0	0	0			REV__ENST00000449660.5_1_1:2482824-2482977:-|nuORF	REV__ENST00000449660.5_1_1:2482824-2482977:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2491149902344	2	406.248486	810.48242	0.12795	5.1981E-05	-0.30485	-0.00012384	-0.17689	-7.1862E-05	406.24811937571087	90.223	1.1293	90.085	89.575	90.704	-0.13824					59	26	3	0	0	0	1.0572	1	11020	11020		28.254	1.4582	1	760810	+		57843	32682	40489	40553	63305	63305					0.06959774885569914
PGRWGTQCV	9	Unmodified	_PGRWGTQCV_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2896423339844	2	502.242544	1002.47053	0.67084	0.00033692	-1.0681	-0.00053645	-0.39726	-0.00019952	502.2415202605901	83.185	0.55471	83.094	82.872	83.427	-0.090454					28	12	3	0	0	0	0.024477	1	10383	10383		27.882	0	1	190560	+		57844	36756	40490	40554	63306	63306					-0.03060209919931367
PGSARRLP	8	Unmodified	_PGSARRLP_					0	0	0		nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2536315917969	2	427.253769	852.492984	-0.63751	-0.00027238	0.23833	0.00010183	-0.39919	-0.00017055	427.2539474170651	23.379	2.0397	23.379	22.479	24.518	0					128	46	5	0	0	0	0.87148	1	882	882		53.351	3.3269	1	16896000			57845	6565	40491	40555	63307	63307					0.0608375753998871
PGSARRPL	8	Unmodified	_PGSARRPL_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2537536621094	2	427.253769	852.492984	-0.16668	-7.1214E-05	-0.17819	-7.6133E-05	-0.34487	-0.00014735	427.25375529811447	23.255	2.2724	23.331	22.319	24.591	0.076241					120	50	5	0	0	0	0.71833	2	821	821;833		65.803	5.5092	1	17722000			57846	9487	40492	40556	63308;63309	63308					0.0608375753998871
PGSELRDGSL	10	Unmodified	_PGSELRDGSL_					0	0	0		ENSG00000185697|ENST00000522677|MYBL1;nc|ENSG00000185697|P10243-2|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	ENSG00000185697|ENST00000522677|MYBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.31396484375	2	515.76182	1029.50909	0.19016	9.8078E-05	-2.5908	-0.0013362	-2.4006	-0.0012381	515.7595269480692	98.203	0.70375	98.2	97.894	98.597	-0.0020752					48	16	4	0	0	0	0.03519	1	12483	12483		35.152	6.8977	1	235560			57847	9465	40493	40557	63310	63310					-0.004486258044153146
PGSGHMEKP	9	Unmodified	_PGSGHMEKP_					0	0	0		ENST00000488252.6_1_19:19287863-19288136:-|nuORF	ENST00000488252.6_1_19:19287863-19288136:-|nuORF	ENST00000488252.6_1_19:19287863-19288136:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.8076477050781	2	470.221277	938.428001	0.43502	0.00020456	-3.7775	-0.0017762	-3.3424	-0.0015717	470.21934326794747	106.41	0.62651	106.41	106.09	106.72	-0.0013123					32	20	3	0	0	0	0.024457	1	13623	13623		21.96	3.6355	1	114310			57848	15390	40494	40558	63311	63311					-0.04367605048173573
PGSGHMEKP	9	Unmodified	_PGSGHMEKP_					0	0	0		ENST00000488252.6_1_19:19287863-19288136:-|nuORF	ENST00000488252.6_1_19:19287863-19288136:-|nuORF	ENST00000488252.6_1_19:19287863-19288136:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.221277	938.428001	0.61262	0.00028807	-4.9105	-0.002309	-4.2978	-0.0020209	470.219053286424	106.47	0.33501	106.47	106.37	106.7	0.0007019	0.030457	-0.00042326	NaN	21.96	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126650			57849	15390	40494	40558							-0.04367605048173573
PGSHASWV	8	Unmodified	_PGSHASWV_					0	0	0			REV__ENSG00000169174|ENST00000302118|PCSK9	REV__ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.2403564453125	2	420.703577	839.392602	0.1451	6.1042E-05	0.060312	2.5373E-05	0.20541	8.6416E-05	420.7036429188342	37.429	0.4299	37.236	37.039	37.469	-0.193					14	10	2	0	0	0	0.027866	1	2981	2981		26.796	6.3143	1	68519	+		57850	26327	40495	40559	63312	63312					-0.033518995136660124
PGSIIMSSLPG	11	Unmodified	_PGSIIMSSLPG_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8087768554688	2	529.781167	1057.54778	-0.5627	-0.00029811	1.191	0.00063097	0.62831	0.00033286	529.7818067080549	62.049	1.2098	61.823	61.153	62.363	-0.22663					53	33	2	0	0	0	0.023873	1	7141	7141		60.118	0	1	2123700			57851	9694	40496	40560	63313	63313					0.021309635057150444
PGSLCHEP	8	Unmodified	_PGSLCHEP_					0	0	0			REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B	REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.24053955078125	2	420.189445	838.364338	0.13572	5.7026E-05	-3.0361	-0.0012758	-2.9004	-0.0012187	420.18866788886385	37.426	0.19236	37.233	37.076	37.269	-0.193					7	4	2	0	0	0	0.027866	1	2993	2993		19.36	1.0356	1	43139	+		57852	28643	40497	40561	63314	63314					-0.061309654852720996
PGSLSMATV	9	Unmodified	_PGSLSMATV_					0	0	0		ENSG00000139835|ENST00000375431|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	431.8525390625	2	431.720578	861.426604	-0.098724	-4.2621E-05	-0.48274	-0.00020841	-0.58147	-0.00025103	431.72042800592595	45.72	0.61064	45.72	45.445	46.056	0					24	17	2	0	0	0	0.024262	1	4471	4471		23.042	0	1	237160			57853	5371	40498	40562	63315	63315					-0.00965239136917262
PGSLSMATV	9	Unmodified	_PGSLSMATV_					0	0	0		ENSG00000139835|ENST00000375431|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	431.720578	861.426604	-0.43088	-0.00018602	0.28583	0.0001234	-0.14505	-6.2623E-05	431.7205418505408	45.946	0.40214	45.743	45.528	45.93	-0.20226	0.0075424	0.00023237	NaN	23.042	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72832			57854	5371	40498	40562							-0.00965239136917262
PGSLVFFFIY	10	Unmodified	_PGSLVFFFIY_					0	0	0			REV__ENST00000276925.6_1_9:22005775-22005913:-|nuORF	REV__ENST00000276925.6_1_9:22005775-22005913:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.2785034179688	2	595.318243	1188.62193	-0.42708	-0.00025425	-4.4297	-0.0026371	-4.8568	-0.0028914	595.3155261211516	46.067	0.76687	45.971	45.706	46.473	-0.096653					27	20	2	0	0	0	0.03519	1	4399	4399		29.15	3.0862	1	359020	+		57855	29855	40499	40563	63316	63316					0.03516674659567798
PGSRGPGAI	9	Unmodified	_PGSRGPGAI_					0	0	0		ENST00000488968.1_1_8:21946719-21952121:+|nuORF;ENST00000498344.2_1_8:21946698-21954290:+|nuORF	ENST00000488968.1_1_8:21946719-21952121:+|nuORF	ENST00000488968.1_1_8:21946719-21952121:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.21099853515625	2	406.224677	810.434801	0.16267	6.6082E-05	0.45382	0.00018435	0.6165	0.00025044	406.2246842497359	27.734	1.418	27.491	27.163	28.581	-0.24217					52	33	4	0	0	0	0.024535	1	1520	1520		7.1934	0	1	315430			57856	15398	40500	40564	63317	63317					0.022000758947001486
PGSRPHLI	8	Unmodified	_PGSRPHLI_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.8536376953125	2	438.756144	875.497735	0.34741	0.00015243	3.3082	0.0014515	3.6556	0.0016039	438.75747070043803	38.826	0.44504	38.6	38.361	38.806	-0.2257					20	11	2	0	0	0	0.027866	1	3215	3215		4.6817	0	1	324780			57857	10075	40501	40565	63318	63318					0.05500641682760943
PGSRRGGGGR	10	Unmodified	_PGSRRGGGGR_					0	0	0			REV__ENST00000356692.9_1_3:73046001-73046169:+|nuORF	REV__ENST00000356692.9_1_3:73046001-73046169:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.802734375	2	478.760281	955.506009	-1.0719	-0.0005132	3.6828	0.0017632	2.6109	0.00125	478.76138253371533	33.701	0.19189	33.526	33.391	33.583	-0.17557					6	4	2	0	0	0	0.03519	1	2400	2400		29.17	0	1	49010	+		57858	30796	40502	40566	63319	63319					0.026475886520984204
PGSSRPLPA	9	Unmodified	_PGSSRPLPA_					0	0	0			REV__ENST00000371741.5_1_20:48098796-48099132:-|nuORF	REV__ENST00000371741.5_1_20:48098796-48099132:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2276916503906	2	441.245609	880.476666	-0.49591	-0.00021882	0.39527	0.00017441	-0.10064	-4.4407E-05	441.24557530740464	35.115	1.4098	35.115	34.785	36.195	0					75	37	3	0	0	0	0.024205	1	2672	2672		53.351	0	1	817180	+		57859	31175	40503	40567	63320	63320					0.031646315832290384
PGSTPPCLLL	10	Unmodified	_PGSTPPCLLL_					0	0	0			REV__ENST00000337907.7_2_1:8418828-8419942:-|nuORF	REV__ENST00000337907.7_2_1:8418828-8419942:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7795104980469	2	499.272978	996.531403	-0.75549	-0.0003772	2.7216	0.0013588	1.9661	0.0009816	499.2746246242585	33.131	0.64967	33.138	32.738	33.388	0.0066261					24	17	2	0	0	0	0.03519	1	2291	2291		27.882	0	1	294260	+		57860	30570	40504	40568	63321	63321					0.03299882339638316
PGSVKNDH	8	Unmodified	_PGSVKNDH_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2537536621094	2	427.211766	852.40898	-0.64253	-0.00027449	-3.9279	-0.001678	-4.5704	-0.0019525	427.2102198706556	23.301	0.27592	23.301	23.206	23.482	0					8	6	2	0	0	0	0.027866	1	893	893		47.916	7.1374	1	26427	+		57861	37281;25714	40505	40569	63322	63322					-0.02312818347581924
PGTALCVF	8	Unmodified	_PGTALCVF_					0	0	0			REV__ENSG00000176020|ENST00000320431|AMIGO3	REV__ENSG00000176020|ENST00000320431|AMIGO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.2327880859375	2	404.207107	806.399661	0.24705	9.986E-05	-2.7163	-0.0010979	-2.4692	-0.00099808	404.2058052978409	84.523	0.42992	84.385	83.977	84.406	-0.13789					12	9	2	0	0	0	0.027866	1	10184	10184		46.766	9.738	1	49861	+		57862	26989	40506	40570	63323	63323					-0.011283029574542525
PGTERRAPE	9	Unmodified	_PGTERRAPE_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7919006347656	2	506.762155	1011.50976	-1.1313	-0.00057329	-1.0985	-0.00055666	-2.2297	-0.0011299	506.7615301644797	44.4	0.23858	44.4	44.314	44.553	0					10	6	2	0	0	0	0.024447	1	4257	4257		49.442	19.124	1	145830			57863	5550	40507	40571	63324	63324					0.004462136352799462
PGTGPWVTTV	10	Unmodified	_PGTGPWVTTV_					0	0	0		nc|ENSG00000119771|Q96CT2-2|KLHL29;ENSG00000119771|ENST00000486442|KLHL29;ENST00000489446.1_1_2:23755466-23866061:+|nuORF	nc|ENSG00000119771|Q96CT2-2|KLHL29	nc|ENSG00000119771|Q96CT2-2|KLHL29	MSMS	OPSCC_40_ClassI_Rep-2	5	507.76641845703125	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.412	1	17.206	16.706	17.706	-0.20669								0	0	0	0.76739	1	171	171		20.947	0.95016	1				57864	3765	40508	40572	63325	63325					0.011977675518892283
PGTPGREGRP	10	Unmodified	_PGTPGREGRP_					0	0	0			REV__nc|ENSG00000204248|P13942-8|COL11A2	REV__nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2717895507812	2	512.270147	1022.52574	0.37647	0.00019285	1.6407	0.00084048	2.0172	0.0010333	512.2706228982657	104.7	1.3087	104.53	104.2	105.51	-0.16484					84	41	3	0	0	0	1.089	1	13066	13066		34.173	5.023	1	273330	+		57865	28577	40509	40573	63326	63326					0.015379198721802823
PGTPLILT	8	Unmodified	_PGTPLILT_					0	0	0		ENST00000460968.1_1_2:74666898-74667252:-|nuORF;ENST00000305557.9_1_2:74666898-74667633:-|nuORF	ENST00000460968.1_1_2:74666898-74667252:-|nuORF	ENST00000460968.1_1_2:74666898-74667252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.24853515625	2	406.249829	810.485105	0.38561	0.00015665	-3.5924	-0.0014594	-3.2068	-0.0013028	406.2482566602026	110.51	0.62167	110.39	110.14	110.76	-0.12525					30	19	2	0	0	0	1.0574	1	13585	13585		20.482	1.1219	1	171040			57866	11988	40510	40574	63327	63327					0.07228185499832307
PGTTSPPEHCW	11	Unmodified	_PGTTSPPEHCW_					0	0	0		nc|ENSG00000137103|A6NDV4-2|TMEM8B;nc|ENSG00000137103|A6NDV4|TMEM8B;ENSG00000137103|ENST00000643932|TMEM8B;ENST00000490199.2_1_9:35841173-35846157:+|nuORF	nc|ENSG00000137103|A6NDV4-2|TMEM8B	nc|ENSG00000137103|A6NDV4-2|TMEM8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.2628173828125	2	606.26113	1210.50771	-0.63785	-0.0003867	3.4732	0.0021057	2.8353	0.001719	606.2630648036746	32.061	0.76892	31.824	31.57	32.339	-0.23667					31	17	3	0	0	0	0.79085	1	2195	2195		49.442	0	1	1170500			57867	5090	40511	40575	63328	63328					-0.0891258316485164
PGVAPLLLR	9	Unmodified	_PGVAPLLLR_					0	0	0			REV__ENSG00000186806|ENST00000335624|VSIG10L	REV__ENSG00000186806|ENST00000335624|VSIG10L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.3039855957031	2	468.30547	934.596387	-0.14446	-6.7653E-05	-0.86869	-0.00040681	-1.0132	-0.00047447	468.3050202581613	61.906	1.6994	61.968	61.542	63.242	0.062767					95	44	5	0	0	0	1.057	1	7152	7152		3.9852	2.3662	1	43419000	+		57868	27884	40512	40576	63329	63329					0.12647244927813972
PGVARKPGGG	10	Unmodified	_PGVARKPGGG_					0	0	0		ENST00000422506.5_1_22:24056493-24059433:-|nuORF;ENST00000432595.1_1_22:24052030-24059433:-|nuORF;ENST00000444220.2_1_22:24056424-24059433:-|nuORF	ENST00000422506.5_1_22:24056493-24059433:-|nuORF	ENST00000422506.5_1_22:24056493-24059433:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2588806152344	2	448.259051	894.503549	-0.45696	-0.00020483	0.23802	0.00010669	-0.21894	-9.814E-05	448.25902243845417	89.198	2.2068	89.035	88.471	90.677	-0.1626					108	52	4	0	0	0	1.1166	1	10903	10903		30.504	0	1	9232100			57869	14007	40513	40577	63330	63330					0.052077401944416124
PGVARLPLL	9	Unmodified	_PGVARLPLL_					0	0	0		nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1;nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-4|BMP1	nc|ENSG00000168487|P13497-4|BMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.3052062988281	2	468.30547	934.596387	-0.27594	-0.00012923	-0.68264	-0.00031968	-0.95859	-0.00044891	468.3051649520783	62.223	1.9745	61.996	61.495	63.469	-0.22663					102	54	5	0	0	0	0.64155	2	7192	7192;7237		50.025	5.2613	1	45322000			57870	7829	40514	40578	63331;63332	63331					0.12647244927802603
PGVEKFGDT	9	Unmodified	_PGVEKFGDT_					0	0	0			REV__ENST00000562537.1_1_16:1414244-1416075:-|nuORF	REV__ENST00000562537.1_1_16:1414244-1416075:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.2337341308594	2	475.234907	948.455261	0.37421	0.00017784	-1.1219	-0.00053315	-0.74765	-0.00035531	475.234312325968	105.62	0.56879	105.5	105.24	105.8	-0.12444					36	16	3	0	0	0	0.97455	1	13159	13159		25.574	0.12388	1	228220	+		57871	35198	40515	40579	63333	63333					-0.021027982361488284
PGWRTRLPQT	10	Unmodified	_PGWRTRLPQT_					0	0	0			REV__ENST00000380817.7_1_22:50883674-50883944:-|nuORF	REV__ENST00000380817.7_1_22:50883674-50883944:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.55999755859375	3	404.55964	1210.65709	0.32353	0.00013089	-0.42937	-0.00017371	-0.10584	-4.2819E-05	404.5594858333592	33.403	1.0848	33.172	32.752	33.837	-0.23107					87	26	6	0	0	0	1.0548	1	2405	2405		38.714	10.137	1	9215100	+		57872	31499	40516	40580	63334	63334					0.060187302400890985
PGWVAEWL	8	Unmodified	_PGWVAEWL_					0	0	0			REV__ENST00000461382.5_1_15:42131111-42133534:+|nuORF	REV__ENST00000461382.5_1_15:42131111-42133534:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.769287109375	2	479.245078	956.475603	-0.62458	-0.00029933	0.37422	0.00017934	-0.25036	-0.00011999	479.24510543918404	34.778	1.2147	34.828	34.173	35.388	0.050255					69	31	3	0	0	0	0.027866	1	2572	2572		44.531	8.9128	1	663480	+		57873	32875	40517	40581	63335	63335					-0.004375827856847536
PHALFVHS	8	Unmodified	_PHALFVHS_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7146911621094	2	454.24287	906.471186	0.057493	2.6116E-05	-3.9142	-0.001778	-3.8567	-0.0017519	454.2408836002043	23.056	0.68656	23.056	22.479	23.165	0					16	14	2	0	0	0	0.027866	1	836	836		23.037	4.7123	1	25554			57874	9325	40518	40582	63336	63336					0.014209527914317732
PHALLSLK	8	Unmodified	_PHALLSLK_					0	0	0		ENST00000474353.6_1_10:97175848-97181803:-|nuORF	ENST00000474353.6_1_10:97175848-97181803:-|nuORF	ENST00000474353.6_1_10:97175848-97181803:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.7763977050781	2	439.776545	877.538538	-0.44891	-0.00019742	0.69493	0.00030561	0.24602	0.00010819	439.7767265103901	22.068	0.95505	21.877	21.275	22.23	-0.19072					34	19	2	0	0	0	0.96719	1	745	745		42.474	1.9018	1	283740			57875	15032	40519	40583	63337	63337					0.09486983002386751
PHAPLLTLFW	10	Unmodified	_PHAPLLTLFW_					0	0	0			REV__ENST00000567409.1_1_16:31368426-31368879:+|nuORF	REV__ENST00000567409.1_1_16:31368426-31368879:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.2997436523438	2	597.837134	1193.65972	-0.44909	-0.00026848	-3.5637	-0.0021305	-4.0127	-0.002399	597.8351752652372	69.641	0.36786	69.391	69.156	69.524	-0.25063					12	8	2	0	0	0	0.03519	1	8079	8079		30.504	17.05	1	117380	+		57876	35320	40520	40584	63338	63338					0.07063185645051817
PHAPRKSRP	9	Unmodified	_PHAPRKSRP_					0	0	0			REV__nc|ENSG00000124782|Q92766-4|RREB1	REV__nc|ENSG00000124782|Q92766-4|RREB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.303955078125	2	523.304324	1044.5941	-0.20164	-0.00010552	-0.84608	-0.00044276	-1.0477	-0.00054828	523.3037912633964	99.824	1.0285	99.834	99.446	100.47	0.010117					42	25	2	0	0	0	0.75397	1	12743	12743		42.396	3.1433	1	1714900	+		57877	22788	40521	40585	63339	63339					0.0735820924271593
PHAQPEDAGEY	11	Unmodified	_PHAQPEDAGEY_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.8876953125	3	405.17552	1212.50473	0.73098	0.00029617	-1.7405	-0.00070523	-1.0096	-0.00040905	405.17448784769556	22.857	0.82951	22.661	22.2	23.029	-0.19598					38	17	3	0	0	0	0.024747	1	796	796		26.75	0	1	112240			57878	4006	40522	40586	63340	63340					-0.09302135017992441
PHATIPLN	8	Unmodified	_PHATIPLN_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.8884582519531	2	431.742702	861.470852	0.018945	8.1794E-06	4.1027	0.0017713	4.1216	0.0017795	431.74438766927966	21.831	0.57531	21.64	21.372	21.947	-0.19072					26	11	3	0	0	0	0.027866	1	725	725		19.36	0	1	244130	+		57879	36819	40523	40587	63341	63341					0.034575330715597374
PHAVPAAPL	9	Unmodified	_PHAVPAAPL_					0	0	0			REV__ENST00000278853.9_1_11:60640974-60642470:+|nuORF	REV__ENST00000278853.9_1_11:60640974-60642470:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	436.7549133300781	2	436.75307	871.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.125	1	22.944	22.444	23.444	-0.18069								0	0	0	0.41653	1	877	877		60.404	17.929	1		+		57880	29867	40524	40588	63342	63342					0.050701234512075644
PHAVPAAPL	9	Unmodified	_PHAVPAAPL_					0	0	0			REV__ENST00000278853.9_1_11:60640974-60642470:+|nuORF	REV__ENST00000278853.9_1_11:60640974-60642470:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.755126953125	2	436.75307	871.491587	1.5916	0.00069513	2.4563	0.0010728	4.0479	0.0017679	436.75399640960234	22.975	0.63737	22.784	22.572	23.209	-0.19117					34	13	3	0	0	0	0.48384	1	858	858		60.404	9.0682	1	735090	+		57881	29867	40524	40588	63343	63343					0.050701234512075644
PHAYADPI	8	Unmodified	_PHAYADPI_					0	0	0			REV__nc|ENSG00000186642|O00408-5|PDE2A	REV__nc|ENSG00000186642|O00408-5|PDE2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7670593261719	2	442.21906	882.423567	-0.27973	-0.0001237	-3.7671	-0.0016659	-4.0468	-0.0017896	442.2171940284985	26.114	0.87557	26.09	25.777	26.652	-0.023088					46	20	3	0	0	0	0.027866	1	1281	1281		20.482	6.7065	1	1423600	+		57882	27874	40525	40589	63344	63344					-0.022347461994399964
PHDKLEPK	8	Unmodified	_PHDKLEPK_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-3|VPS8	REV__nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2968444824219	2	482.266542	962.51853	0.24259	0.00011699	-0.71488	-0.00034476	-0.47229	-0.00022777	482.2659214229562	45.644	1.1775	45.547	45.191	46.368	-0.096653					64	32	4	0	0	0	0.027866	1	4433	4433		35.618	12.096	1	2736300	+		57883	25100	40526	40590	63345	63345					0.03577187271753246
PHDLHDRAPRA	11	Unmodified	_PHDLHDRAPRA_					0	0	0			REV__ENST00000569358.5_1_16:720470-721765:+|nuORF	REV__ENST00000569358.5_1_16:720470-721765:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.7381591796875	3	428.890048	1283.64832	-0.020829	-8.9335E-06	3.3035	0.0014169	3.2827	0.0014079	428.8913616774903	39.994	0.50094	39.764	39.429	39.93	-0.23021					26	12	4	0	0	0	0.024726	1	3394	3394		25.892	9.3619	1	96871	+		57884	35194	40527	40591	63346	63346					0.017837566036178032
PHDLITGGII	10	Unmodified	_PHDLITGGII_					0	0	0		nc|ENSG00000037757|Q9BV20-2|MRI1;ENSG00000037757|ENST00000040663|MRI1	nc|ENSG00000037757|Q9BV20-2|MRI1	nc|ENSG00000037757|Q9BV20-2|MRI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2965087890625	2	518.295299	1034.57605	-0.23033	-0.00011938	3.0254	0.001568	2.795	0.0014487	518.2963662074968	101.33	1.208	101.33	100.7	101.91	0.0090332					51	27	3	0	0	0	0.03519	1	12849	12849		63.306	0	1	151510			57885	1048	40528	40592	63347	63347					0.060140294773418645
PHERETWKE	9	Unmodified	_PHERETWKE_					0	0	0		SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2386169433594	3	404.531638	1210.57309	1.2543	0.00050742	2.102	0.00085033	3.3563	0.0013577	404.53241701579435	27.545	0.63141	27.626	27.319	27.951	0.081293					29	16	2	0	0	0	0.024409	1	1423	1423		27.047	9.8806	1	274740			57886	38036	40529	40593	63348	63348					-0.023778456474929044
PHERETWKE	9	Unmodified	_PHERETWKE_					0	0	0		SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.531638	1210.57309	0.51615	0.0002088	2.7526	0.0011135	3.2688	0.0013223	404.532687307076	27.837	0.69494	27.837	27.58	28.274	0	0.074899	0.00012828	NaN	27.047	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251200			57887	38036	40529	40593							-0.023778456474929044
PHERETWKE	9	Unmodified	_PHERETWKE_					0	0	0		SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|76|3|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	404.531638	1210.57309	0.10639	4.3037E-05	3.0538	0.0012353	3.1601	0.0012784	404.5328059798826	27.826	0.73278	27.822	27.509	28.242	-0.0042019	0.06031	0.00049374	NaN	27.047	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227020			57888	38036	40529	40593							-0.023778456474929044
PHFPSAFIF	9	Unmodified	_PHFPSAFIF_					0	0	0			REV__ENST00000588100.1_1_19:36235704-36236292:-|nuORF	REV__ENST00000588100.1_1_19:36235704-36236292:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7681884765625	2	531.774003	1061.53345	-1.1135	-0.00059214	-3.4535	-0.0018365	-4.567	-0.0024286	531.7721143321236	24.63	0.6671	24.63	24.385	25.052	0					21	14	2	0	0	0	0.024466	1	1117	1117		33.516	3.674	1	1204200	+		57889	35642	40530	40594	63349	63349					0.005146791397464767
PHFTVCWPT	9	Unmodified	_PHFTVCWPT_					0	0	0			REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1;REV__ENST00000524783.1_1_11:46568623-46568797:-|nuORF	REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3081665039062	2	544.25512	1086.49569	-0.75936	-0.00041328	1.0813	0.00058851	0.32195	0.00017522	544.2547685422229	104.58	0.56584	104.45	104.23	104.8	-0.12927					19	14	2	0	0	0	0.024541	1	13067	13067		23.042	6.5693	1	36167	+		57890	21862;34397	40531	40595	63350	63350					-0.04410155117375325
PHFYGNEI	8	Unmodified	_PHFYGNEI_					0	0	0			REV__ENSG00000143278|ENST00000367412|F13B	REV__ENSG00000143278|ENST00000367412|F13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.77752685546875	2	488.729792	975.445031	0.64668	0.00031605	0.4969	0.00024285	1.1436	0.0005589	488.72968454281295	51.26	0.39209	51.148	50.934	51.327	-0.11163					12	9	2	0	0	0	0.027866	1	5250	5250		50.025	12.865	1	105980	+	+	57891	24219	40532	40596	63351	63351					-0.04367361170704953
PHGAELHKKL	10	Unmodified	_PHGAELHKKL_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2239990234375	2	565.327465	1128.64038	0.79699	0.00045056	-2.6934	-0.0015227	-1.8965	-0.0010721	565.3258100965929	36.944	0.39851	36.735	36.485	36.883	-0.2092					12	9	2	0	0	0	0.03519	1	2939	2939		34.173	1.3601	1	96317	+		57892	20914;37796	40533	40597	63352	63352					0.0812022935413097
PHGDPAKR	8	Unmodified	_PHGDPAKR_					0	0	0			REV__ENSG00000130052|ENST00000374599|STARD8	REV__ENSG00000130052|ENST00000374599|STARD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.2357482910156	2	439.235576	876.456599	0.3236	0.00014214	-0.31456	-0.00013817	0.0090355	3.9687E-06	439.2352790276017	25.518	0.67179	25.347	25.118	25.79	-0.17151					41	15	5	0	0	0	0.99042	1	1200	1200		38.806	0	1	875920	+		57893	23078	40534	40598	63353	63353					0.013428806432784768
PHGGGGGG	8	Unmodified	_PHGGGGGG_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;ENSG00000103241|ENST00000262426|FOXF1	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	595.2596435546875	1	595.258299	594.251023	-1.6799	-0.00099996	2.7659	0.0016464	1.086	0.00064646	595.2601260108953	76.168	0.79717	76.168	75.881	76.678	0					49	19	4	0	0	0	1.0574	1	9384	9384		1.619	0	1	1756100			57894	7039	40535	40599	63354	63354					-0.06233272816132285
PHGPHMPP	8	Unmodified	_PHGPHMPP_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.209716796875	2	435.207973	868.401392	0.96986	0.00042209	2.3322	0.001015	3.302	0.0014371	435.20891991296327	98.507	0.98133	98.504	98.097	99.078	-0.002533					37	22	2	0	0	0	1.0574	1	12511	12511		24.504	2.5441	1	365550			57895	7664	40536	40600	63355	63355					-0.038072491488378546
PHGRIAAT	8	Unmodified	_PHGRIAAT_					0	0	0			REV__ENST00000367255.9_1_6:152748906-152749522:-|nuORF	REV__ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.8587341308594	2	411.732669	821.450785	-0.0029581	-1.218E-06	-0.42593	-0.00017537	-0.42889	-0.00017659	411.7327301550196	30.227	0.3878	30.078	29.792	30.18	-0.14952					14	8	2	0	0	0	0.027866	1	1902	1902		33.516	5.2613	1	45395	+		57896	31012	40537	40601	63356	63356					0.03291782131600485
PHHFLLLV	8	Unmodified	_PHHFLLLV_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2409362792969	2	488.292362	974.570172	-0.40349	-0.00019702	1.607	0.00078468	1.2035	0.00058765	488.29325687141545	52.444	0.32182	52.536	52.28	52.602	0.091942					10	7	2	0	0	0	0.027866	1	5522	5522		24.504	0	1	59508	+		57897	20872	40538	40602	63357	63357					0.08186975756336778
PHHHAHPGAA	10	Unmodified	_PHHHAHPGAA_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2669677734375	2	516.249549	1030.48454	-0.52236	-0.00026967	2.3527	0.0012146	1.8304	0.00094492	516.250766529216	30.691	0.79275	30.7	30.331	31.124	0.0086708					35	18	2	0	0	0	0.03519	1	2033	2033		26.796	7.4361	1	1656500			57898	4437	40539	40603	63358	63358					-0.0294779637663396
PHHHAHPGAA	10	Unmodified	_PHHHAHPGAA_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.249549	1030.48454	-1.3455	-0.0006946	3.4378	0.0017748	2.0923	0.0010801	516.2511199468807	30.731	0.7462	30.731	30.384	31.131	0	0.11838	0.00082666	NaN	19.36	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1371200			57899	4437	40539	40603							-0.0294779637663396
PHHIEIVL	8	Unmodified	_PHHIEIVL_					0	0	0			REV__ENSG00000103569|ENST00000219919|AQP9	REV__ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2783508300781	2	479.279452	956.544351	0.81701	0.00039158	-4.3816	-0.0021	-3.5646	-0.0017084	479.27726654888494	96.228	0.97208	96.234	95.732	96.704	0.0065002					60	22	4	0	0	0	0.94001	1	12203	12203		46.766	2.2354	1	1734500	+		57900	21399	40540	40604	63359	63359					0.0643408151404401
PHIKSLDN	8	Unmodified	_PHIKSLDN_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2508239746094	2	462.250892	922.48723	-0.37947	-0.00017541	-0.22533	-0.00010416	-0.6048	-0.00027957	462.2507152282238	30.387	1.0917	30.143	29.82	30.911	-0.24415					63	25	4	0	0	0	0.99042	1	1918	1918		38.806	1.7777	1	5402100	+		57901	19690	40542	40605	63360	63360					0.02288614237670572
PHIPTPVYAP	10	Unmodified	_PHIPTPVYAP_					0	0	0			REV__ENSG00000196313|ENST00000434423|POM121	REV__ENSG00000196313|ENST00000434423|POM121	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2764282226562	2	546.297842	1090.58113	-1.7279	-0.00094398	1.5579	0.0008511	-0.17001	-9.2874E-05	546.2986672196718	79.738	0.63037	79.565	79.192	79.822	-0.17226					20	14	2	0	0	0	0.03519	1	9847	9847		55.504	0	1	67721	+		57902	28162	40543	40606	63361	63361					0.03946333339968078
PHKKKTRFLFV	11	Unmodified	_PHKKKTRFLFV_					0	0	0			REV__nc|ENSG00000164251|P55085|F2RL1	REV__nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.6242370605469	3	467.622351	1399.84522	0.09496	4.4405E-05	2.9361	0.001373	3.031	0.0014174	467.62365324391635	107.08	0.60744	106.96	106.74	107.35	-0.12381					60	20	4	0	0	0	1.0878	1	13351	13351		14.694	5.8944	1	609420	+		57903	25724	40544	40607	63362	63362					0.16129588164494635
PHLALGRLN	9	Unmodified	_PHLALGRLN_					0	0	0			REV__LRP2|p.P3323L|1|0.35|ENSG00000081479|chr2:169182197-169182197|G/A|missense_variant	REV__LRP2|p.P3323L|1|0.35|ENSG00000081479|chr2:169182197-169182197|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2609558105469	2	495.795801	989.577048	0.034619	1.7164E-05	0.49567	0.00024575	0.53029	0.00026292	495.79560067818664	28.724	1.2816	28.805	28.248	29.53	0.080811					38	31	2	0	0	0	0.024541	1	1742	1742		11.511	0	1	121910	+		57904	36327	40545	40608	63363	63363					0.08184288636903148
PHLCILAPI	9	Unmodified	_PHLCILAPI_					0	0	0			REV__ENST00000538185.1_1_11:61256765-61256957:+|nuORF	REV__ENST00000538185.1_1_11:61256765-61256957:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7908020019531	2	488.786056	975.557558	0.5767	0.00028188	4.0777	0.0019931	4.6544	0.002275	488.78789328745785	96.284	0.92898	96.29	95.775	96.704	0.0065079					49	21	3	0	0	0	0.024541	1	12229	12229		8.8223	0.59103	1	650720	+		57905	34712	40546	40609	63364	63364					0.06880196301767683
PHLHGGARG	9	Unmodified	_PHLHGGARG_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2510070800781	2	451.241193	900.467832	-0.20853	-9.4096E-05	0.047789	2.1565E-05	-0.16074	-7.2531E-05	451.24059471308715	33.399	0.91515	33.399	33.135	34.05	0					30	24	2	0	0	0	0.024293	1	2363	2363		42.474	14.592	1	157720	+		57906	28866	40547	40610	63365	63365					0.013617027374380086
PHLHRRLS	8	Unmodified	_PHLHRRLS_					0	0	0		ENST00000297908.7_1_9:125084892-125085006:+|nuORF	ENST00000297908.7_1_9:125084892-125085006:+|nuORF	ENST00000297908.7_1_9:125084892-125085006:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2867736816406	2	508.299042	1014.58353	-0.13014	-6.6151E-05	-0.86335	-0.00043884	-0.99349	-0.00050499	508.298031461518	52.91	0.50831	52.72	52.51	53.019	-0.18981					18	12	2	0	0	0	0.027866	1	5496	5496		65.897	30.279	1	251750			57907	11868	40548	40611	63366	63366					0.07682226588269714
PHLIASIK	8	Unmodified	_PHLIASIK_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.7765808105469	2	439.776545	877.538538	-0.094356	-4.1496E-05	0.49038	0.00021566	0.39602	0.00017416	439.7765284451336	22.034	0.96744	21.832	21.178	22.146	-0.20199					41	19	3	0	0	0	0.78609	1	720	720		60.294	0	1	301300	+		57908	37783	40549	40612	63367	63367					0.09486983002386751
PHLIASIK	8	Unmodified	_PHLIASIK_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	439.776545	877.538538	-0.14665	-6.4494E-05	0.53093	0.00023349	0.38427	0.00016899	439.7765886832729	21.45	0.4779	21.521	21.352	21.83	0.071489	-0.22255	7.5314E-05	NaN	60.294	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13644	+		57909	37783	40549	40612							0.09486983002386751
PHLIASIK	8	Unmodified	_PHLIASIK_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	439.776545	877.538538	0.13082	5.753E-05	0.22067	9.7047E-05	0.35149	0.00015458	439.77650891054327	21.933	0.85714	21.745	21.15	22.008	-0.18842	0.00094056	-0.00019757	NaN	60.294	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182380	+		57910	37783	40549	40612							0.09486983002386751
PHLIASIK	8	Unmodified	_PHLIASIK_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	439.776545	877.538538	-0.094356	-4.1496E-05	0.49038	0.00021566	0.39602	0.00017416	439.7765284451336	22.034	0.96744	21.832	21.178	22.146	-0.20199	0.088511	3.9649E-05	NaN	60.294	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301300	+		57911	37783	40549	40612							0.09486983002386751
PHLKGSFSL	9	Unmodified	_PHLKGSFSL_					0	0	0			REV__ENST00000454552.5_3_22:30824720-30824849:+|nuORF	REV__ENST00000454552.5_3_22:30824720-30824849:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2784118652344	2	493.276909	984.539266	-0.3339	-0.00016471	3.6147	0.001783	3.2808	0.0016183	493.2784954520519	20.146	1.7381	19.978	19.669	21.407	-0.16774					95	35	3	0	0	0	0.85329	1	527	527		35.618	1.4457	1	867630	+		57912	32763	40550	40613	63368	63368					0.046377776514418656
PHLPHPLAVI	10	Unmodified	_PHLPHPLAVI_					0	0	0		ENST00000491840.1_1_13:26141407-26501380:+|nuORF	ENST00000491840.1_1_13:26141407-26501380:+|nuORF	ENST00000491840.1_1_13:26141407-26501380:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8134155273438	2	547.329476	1092.6444	-0.077464	-4.2398E-05	-1.9658	-0.0010759	-2.0432	-0.0011183	547.328444924057	69.55	0.74364	69.257	68.97	69.714	-0.29291					45	18	4	0	0	0	0.03519	1	8379	8379		19.36	0	1	807090			57913	15471	40551	40614	63369	63369					0.10178318847852097
PHLPPPPALF	10	Unmodified	_PHLPPPPALF_					0	0	0		ENSG00000198740|ENST00000430262|ZNF652	ENSG00000198740|ENST00000430262|ZNF652	ENSG00000198740|ENST00000430262|ZNF652	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.79248046875	2	543.310752	1084.60695	-1.6093	-0.00087434	-3.9838	-0.0021644	-5.5931	-0.0030388	543.8107455998417	44.176	0.39529	44.176	43.987	44.382	0					19	11	2	0	0	0	0.03519	1	4223	4223		26.796	11.154	1	196550			57914	10185	40552	40615	63370	63370					0.06803227582213367
PHLQELIVP	9	Unmodified	_PHLQELIVP_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3058471679688	2	523.305667	1044.59678	-0.020095	-1.0516E-05	0.37351	0.00019546	0.35341	0.00018494	523.3053239336529	71.639	0.40551	71.364	71.144	71.549	-0.2751					15	9	2	0	0	0	0.024367	1	8357	8357		44.377	0	1	399320			57915	10614	40553	40616	63371	63371					0.07626619857023798
PHLQRQRRKRQ	11	Unmodified	_PHLQRQRRKRQ_					0	0	0			REV__ENSG00000185290|ENST00000329309|NUPR2	REV__ENSG00000185290|ENST00000329309|NUPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.29437255859375	3	501.634424	1501.88144	0.031247	1.5675E-05	-0.31043	-0.00015572	-0.27918	-0.00014005	501.9686932883895	102.21	1.2126	102.08	101.5	102.72	-0.12666					55	29	2	0	0	0	0.024876	1	12699	12699		9.2118	0	1	238720	+		57916	27750	40554	40617	63372	63372					0.15057858113914335
PHLSGLKTLL	10	Unmodified	_PHLSGLKTLL_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8372802734375	2	539.834591	1077.65463	1.9934	0.0010761	-1.2972	-0.00070028	0.69617	0.00037581	540.3357794187888	18.407	0.24464	18.407	18.284	18.529	0					8	4	2	0	0	0	0.03519	1	289	289		27.882	1.1893	1	22045	+		57917	19695	40555	40618	63373	63373					0.11890881782437646
PHLVMTIIV	9	Unmodified	_PHLVMTIIV_					0	0	0		ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7	ENSG00000091664|ENST00000263160|SLC17A6	ENSG00000091664|ENST00000263160|SLC17A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.8089904785156	2	511.806988	1021.59942	0.35795	0.0001832	3.0196	0.0015455	3.3775	0.0017287	511.80842760641497	22.029	0.66449	21.84	21.482	22.147	-0.18894					32	13	3	0	0	0	0.75282	1	755	755		42.474	1.9018	1	615070			57918	1968	40556	40619	63374	63374					0.08948751990317305
PHNLSGLLGL	10	Unmodified	_PHNLSGLLGL_					0	0	0		ENSG00000162951|ENST00000295057|LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7951354980469	2	510.795466	1019.57638	-1.0422	-0.00053235	0.42688	0.00021805	-0.61531	-0.0003143	510.79555822628475	37.95	1.0312	37.728	37.427	38.458	-0.22149					66	28	4	0	0	0	0.48123	1	3088	3088		90.37	8.1293	1	2308100			57919	7018	40557	40620	63375	63375					0.06737449197191836
PHNVADGL	8	Unmodified	_PHNVADGL_					0	0	0			REV__nc|ENSG00000140632|Q49A26-4|GLYR1	REV__nc|ENSG00000140632|Q49A26-4|GLYR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.858642578125	2	411.70886	821.403166	-0.6388	-0.000263	1.1681	0.00048093	0.52933	0.00021793	411.70917958684777	29.82	0.80424	29.648	29.284	30.088	-0.17258					36	18	3	0	0	0	0.027866	1	1908	1908		26.796	22.48	1	301460	+		57920	24034	40558	40621	63376	63376					-0.01467916859246543
PHPPPLAGPS	10	Unmodified	_PHPPPLAGPS_					0	0	0			REV__ENSG00000204335|ENST00000375281|SP5	REV__ENSG00000204335|ENST00000375281|SP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7767028808594	2	485.261259	968.507966	-0.6398	-0.00031047	-2.8283	-0.0013725	-3.4681	-0.0016829	485.25964630606256	29.139	1.2319	29.218	28.531	29.763	0.078344					79	30	4	0	0	0	0.03519	1	1745	1745		38.806	17.859	1	883470	+		57921	28592	40559	40622	63377	63377					0.022452046173157214
PHPSAFLPHSP	11	Unmodified	_PHPSAFLPHSP_					0	0	0			REV__ENST00000380495.8_1_16:30041857-30042208:-|nuORF	REV__ENST00000380495.8_1_16:30041857-30042208:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.8018188476562	2	593.803823	1185.59309	-1.1868	-0.00070472	-2.6589	-0.0015789	-3.8457	-0.0022836	593.8023054283966	35.942	2.4854	35.737	35.428	37.913	-0.20518					202	66	5	0	0	0	0.98904	1	2864	2864		39.253	0	1	98507000	+		57922	31478	40560	40623	63378	63378					0.007719500831171899
PHPSFAWK	8	Unmodified	_PHPSFAWK_					0	0	0			REV__ENST00000370766.7_1_X:134476327-134476507:-|nuORF	REV__ENST00000370766.7_1_X:134476327-134476507:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77703857421875	2	485.250695	968.486836	-1.2939	-0.00062788	-0.43894	-0.000213	-1.7329	-0.00084088	485.25114164531306	30.544	0.57667	30.544	30.057	30.634	0					23	13	3	0	0	0	0.027866	1	1908	1908		47.916	18.766	1	42406	+		57923	31139	40561	40624	63379	63379					0.0013323930846809162
PHQDIPAG	8	Unmodified	_PHQDIPAG_					0	0	0		ENST00000596217.1_2_19:50430994-50431141:-|nuORF	ENST00000596217.1_2_19:50430994-50431141:-|nuORF	ENST00000596217.1_2_19:50430994-50431141:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.7088928222656	2	417.70886	833.403166	0.55168	0.00023044	-1.2014	-0.00050183	-0.64971	-0.00027139	417.7080655695169	98.109	1.1415	98.119	97.771	98.913	0.010239					40	26	2	0	0	0	1.0572	1	12511	12511		28.254	5.2118	1	301490			57924	17429	40562	40625	63380	63380					-0.02019916859251225
PHQKTINKF	9	Unmodified	_PHQKTINKF_					0	0	0			REV__ENSG00000176887|ENST00000322002|SOX11	REV__ENSG00000176887|ENST00000322002|SOX11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.3065185546875	2	556.81419	1111.61383	-0.20398	-0.00011358	-2.1052	-0.0011722	-2.3091	-0.0012858	556.8127106667142	71.93	1.0337	71.724	71.497	72.531	-0.20613					31	24	2	0	0	0	0.023837	1	8412	8412		64.207	28.589	1	630280	+		57925	27053	40563	40626	63381	63381					0.062485404627977914
PHQLAQECTF	10	Carbamidomethyl (C)	_PHQLAQEC(Carbamidomethyl (C))TF_	PHQLAQEC(1)TF		PHQLAQEC(55)TF		0	1	0			REV__ENSG00000134072|ENST00000256460|CAMK1	REV__ENSG00000134072|ENST00000256460|CAMK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.8587341308594	3	410.857245	1229.54991	-0.039265	-1.6133E-05	1.7568	0.00072178	1.7175	0.00070565	410.8582208436467	30.294	0.59433	30.145	29.835	30.429	-0.14952					32	13	3	0	0	0	0.88978	1	1902	1902		54.722	7.4947	1	1641000	+		57926	23418	40564	40627	63382	63382	305				-0.055686077564814696
PHQVLIHW	8	Unmodified	_PHQVLIHW_					0	0	0		ENST00000492807.6_1_6:146673491-146673605:+|nuORF	ENST00000492807.6_1_6:146673491-146673605:+|nuORF	ENST00000492807.6_1_6:146673491-146673605:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7728881835938	2	515.285069	1028.55558	0.0071894	3.7046E-06	3.8579	0.0019879	3.8651	0.0019916	515.2870744796994	18.801	0.44018	18.669	18.45	18.891	-0.13147					14	8	2	0	0	0	0.027866	1	303	303		21.702	1.7056	1	63859			57927	15489	40565	40628	63383	63383					0.04244903608196182
PHQVLIHW	8	Unmodified	_PHQVLIHW_					0	0	0		ENST00000492807.6_1_6:146673491-146673605:+|nuORF	ENST00000492807.6_1_6:146673491-146673605:+|nuORF	ENST00000492807.6_1_6:146673491-146673605:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.285069	1028.55558	2.9779	0.0015344	1.3639	0.00070277	4.3417	0.0022372	515.2855502881495	18.81	0.59013	18.873	18.649	19.239	0.063307	0.10177	-0.001637	NaN	21.702	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62452			57928	15489	40565	40628							0.04244903608196182
PHRANKSDY	9	Unmodified	_PHRANKSDY_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2677612304688	2	544.267604	1086.52066	-0.25026	-0.00013621	-0.30822	-0.00016776	-0.55849	-0.00030397	544.2674991425346	35.901	2.7528	35.684	35.15	37.903	-0.21661					212	72	5	0	0	0	0.50848	1	2855	2855		58.782	5.4305	1	66783000			57929	8707	40566	40629	63384	63384					-0.01914383990447277
PHRANKSDY	9	Unmodified	_PHRANKSDY_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.2674560546875	2	544.267604	1086.52066	-0.31654	-0.00017228	-0.28629	-0.00015582	-0.60282	-0.0003281	544.2675216665498	35.757	3.1662	35.558	34.937	38.103	-0.19829					255	84	6	0	0	0	0.53979	1	2739	2739		56.721	0	1	110170000			57930	8707	40566	40629	63385	63385					-0.01914383990447277
PHRASLEW	8	Unmodified	_PHRASLEW_					0	0	0			REV__ENST00000406434.5_1_2:16736403-16740771:-|nuORF	REV__ENST00000406434.5_1_2:16736403-16740771:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2558288574219	2	498.256508	994.498464	-0.03974	-1.9801E-05	-0.99327	-0.0004949	-1.033	-0.0005147	498.2558519968758	79.436	0.74397	79.455	79.15	79.894	0.018677					42	17	3	0	0	0	0.74904	1	9787	9787		63.306	5.0763	1	1350600	+		57931	31920	40567	40630	63386	63386					0.000994363317886382
PHRCRLFP	8	Unmodified	_PHRCRLFP_					0	0	0		ENST00000369769.3_1_1:111217325-111217538:-|nuORF	ENST00000369769.3_1_1:111217325-111217538:-|nuORF	ENST00000369769.3_1_1:111217325-111217538:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2990112304688	2	513.276721	1024.53889	-0.5189	-0.00026634	-0.038103	-1.9557E-05	-0.557	-0.0002859	513.2767483785356	22.959	0.46189	22.774	22.507	22.969	-0.18539					16	9	2	0	0	0	0.027866	1	871	871		33.516	0	1	40130			57932	12939	40568	40631	63387	63387					0.027600794506042803
PHRLSKITN	9	Unmodified	_PHRLSKITN_					0	0	0		nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-4|BRPF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7918090820312	2	533.311815	1064.60908	-0.39053	-0.00020828	0.10648	5.6787E-05	-0.28405	-0.00015149	533.3117927907737	19.758	0.32374	19.758	19.556	19.88	0					12	6	2	0	0	0	0.024456	1	441	441		51.193	12.387	1	145310			57933	6565	40569	40632	63388	63388					0.07935656320046292
PHRSHKKS	8	Unmodified	_PHRSHKKS_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7918395996094	2	488.7754	975.536246	0.59351	0.00029009	1.3292	0.00064967	1.9227	0.00093976	488.7762689697669	97.333	0.62308	97.333	97.014	97.637	-3.0518E-05					29	13	3	0	0	0	0.027866	1	12320	12320		11.511	0	1	123450			57934	18451	40570	40633	63389	63389					0.04749947317282022
PHRSHKKS	8	Unmodified	_PHRSHKKS_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	488.7754	975.536246	-0.16031	-7.8355E-05	2.7711	0.0013544	2.6108	0.0012761	488.7764901736884	97.289	0.80199	97.289	96.969	97.771	0	0.015649	0.00074758	NaN	11.511	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105880			57935	18451	40570	40633							0.04749947317282022
PHRSHKKS	8	Unmodified	_PHRSHKKS_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	488.7754	975.536246	0.48391	0.00023652	1.6861	0.0008241	2.17	0.0010606	488.77633714487155	97.189	0.71121	97.197	96.883	97.594	0.0089111	-0.07554	-0.00031308	NaN	11.511	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128280			57936	18451	40570	40633							0.04749947317282022
PHRSRRID	8	Unmodified	_PHRSRRID_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.255859375	2	518.791581	1035.56861	0.36834	0.00019109	1.4025	0.00072759	1.7708	0.00091868	518.7925503983241	50.69	0.44048	50.414	50.149	50.589	-0.27643					14	11	2	0	0	0	0.027866	1	5135	5135		35.618	3.6634	1	255590	+		57937	20967	40571	40634	63390	63390					0.05224734720286506
PHRSRRID	8	Unmodified	_PHRSRRID_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.25634765625	2	518.791581	1035.56861	0.37581	0.00019497	1.2269	0.00063653	1.6028	0.0008315	518.7924444721189	50.494	0.51342	50.314	50.172	50.685	-0.18071					16	13	2	0	0	0	0.027866	1	5111	5111		35.618	2.8059	1	224160	+		57938	20967	40571	40634	63391	63391					0.05224734720286506
PHSGPALLL	9	Unmodified	_PHSGPALLL_					0	0	0		ENST00000474910.5_1_19:54687546-54693364:-|nuORF	ENST00000474910.5_1_19:54687546-54693364:-|nuORF	ENST00000474910.5_1_19:54687546-54693364:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.2817077636719	2	452.766178	903.517802	-0.12069	-5.4646E-05	0.38512	0.00017437	0.26442	0.00011972	452.7660054956507	56.132	0.61652	55.976	55.742	56.358	-0.15601					28	16	2	0	0	0	0.024466	1	6173	6173		33.516	0	1	159950			57939	15044	40572	40635	63392	63392					0.06218392622713509
PHSHPQTKTIE	11	Unmodified	_PHSHPQTKTIE_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.7491455078125	3	425.554443	1273.6415	-0.0045492	-1.9359E-06	4.0094	0.0017062	4.0049	0.0017043	425.5548371202202	26.009	0.20805	25.839	25.659	25.867	-0.17078					7	5	2	0	0	0	0.024757	1	1282	1282		15.337	0	1	50814	+		57940	27502	40573	40636	63393	63393					0.015623989324012655
PHSLGLTLL	9	Unmodified	_PHSLGLTLL_					0	0	0		ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	ENST00000551127.5_1_12:113726380-113729792:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.7870178222656	2	475.78711	949.559667	0.36201	0.00017224	-0.46926	-0.00022327	-0.10725	-5.1028E-05	475.7868325295316	85.757	1.4476	85.619	84.908	86.356	-0.13752					87	33	4	0	0	0	0.83071	1	10358	10358		37.159	5.2042	1	4488600			57941	16595	40574	40637	63394	63394					0.08286948311229025
PHSLRRRGG	9	Unmodified	_PHSLRRRGG_					0	0	0			REV__ENST00000563678.1_1_16:31714490-31715590:+|nuORF	REV__ENST00000563678.1_1_16:31714490-31715590:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.296875	2	518.299573	1034.58459	-0.78256	-0.0004056	-3.8273	-0.0019837	-4.6099	-0.0023893	518.2976765003833	102.67	3.4549	102.67	101.08	104.53	0					224	81	6	0	0	0	0.43973	1	13261	13261		63.306	4.5243	1	63214000	+		57942	34417	40575	40638	63395	63395					0.06868440957168787
PHVKLGVK	8	Unmodified	_PHVKLGVK_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.23602294921875	2	439.284537	876.554522	-0.28611	-0.00012568	-0.15323	-6.731E-05	-0.43934	-0.00019299	439.2843723537752	25.742	0.40525	25.572	25.33	25.735	-0.17078					13	9	2	0	0	0	0.027866	1	1231	1231		12.959	5.7658	1	81052	+		57943	20017	40576	40639	63396	63396					0.111306892392804
PHVKLGVK	8	Unmodified	_PHVKLGVK_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	439.284537	876.554522	-0.85616	-0.0003761	0.44922	0.00019733	-0.40694	-0.00017876	439.28466053652176	25.934	0.24962	25.698	25.593	25.843	-0.23603	0.054628	0.000173	NaN	12.959	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59953	+		57944	20017	40576	40639							0.111306892392804
PHVKLGVK	8	Unmodified	_PHVKLGVK_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	439.284537	876.554522	-0.47726	-0.00020965	0.60358	0.00026514	0.12632	5.5492E-05	439.2846527182896	25.829	0.33303	25.661	25.495	25.828	-0.1689	0.017205	0.00030862	NaN	12.959	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74224	+		57945	20017	40576	40639							0.111306892392804
PHVRHYLLV	9	Unmodified	_PHVRHYLLV_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.33255	1132.65055	0.30028	0.00017036	-4.1845	-0.002374	-3.8843	-0.0022037	567.3299930544371	88.156	1.3452	88.025	87.056	88.401	-0.13135					87	32	4	0	0	0	1.0281	1	10776	10776		14.664	3.7985	1	1707200	+		57946	20912	40577	40640	63397	63397					0.08952837079368692
PHVTRRRN	8	Unmodified	_PHVTRRRN_					0	0	0		ENST00000319283.7_1_3:39149012-39149339:-|nuORF	ENST00000319283.7_1_3:39149012-39149339:-|nuORF	ENST00000319283.7_1_3:39149012-39149339:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2969970703125	2	518.299573	1034.58459	-0.78256	-0.0004056	-3.8273	-0.0019837	-4.6099	-0.0023893	518.2976765003833	102.67	3.4549	102.67	101.08	104.53	0					224	81	6	0	0	0	0.68535	1	13285	13285		68.485	5.1784	1	63214000			57947	12182	40578	40641	63398	63398					0.06868440957168787
PHYCFPHSL	9	Unmodified	_PHYCFPHSL_					0	0	0			REV__ENSG00000176900|ENST00000322049|OR51T1	REV__ENSG00000176900|ENST00000322049|OR51T1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8091430664062	2	550.752744	1099.49094	-0.18797	-0.00010352	3.6952	0.0020351	3.5072	0.0019316	551.2561701566483	55.479	0.4548	55.248	55.128	55.583	-0.23087					20	12	2	0	0	0	0.024541	1	5992	5992		3.6843	0	1	248590	+		57948	27057	40579	40642	63399	63399					-0.05483039260138867
PHYLPEVCIKV	11	Unmodified	_PHYLPEVCIKV_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	648.8698120117188	2	649.352291	1296.69003	0.3987	0.0002589	-0.58984	-0.00038301	-0.19114	-0.00012411	649.3499604256309	114.65	0.13065	114.66	114.59	114.72	0.0087204					6	5	2	0	0	0	0.024735	1	14124	14124		19.997	0	1	58012			57949	3446	40580	40643	63400	63400					0.05355176247894633
PHYLQFTI	8	Unmodified	_PHYLQFTI_					0	0	0		CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.L1401Yfs*3|1|0.8|ENSG00000119397|chr9:121154742-121154743|TG/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3061828613281	2	509.77146	1017.52837	-1.5787	-0.00080479	-4.4373	-0.002262	-6.0161	-0.0030668	509.7695015865788	92.181	0.66458	92.037	91.661	92.325	-0.14356					21	15	2	0	0	0	0.027866	1	11265	11265		12.959	0.75233	1	52412			57950	464	40581	40644	63401	63401					0.020303752771496875
PIAFLGLKF	9	Unmodified	_PIAFLGLKF_					0	0	0		nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.8006896972656	2	503.310221	1004.60589	-0.53764	-0.0002706	-3.6887	-0.0018566	-4.2264	-0.0021272	503.3083454865922	57.618	0.55329	57.713	57.465	58.019	0.095306					17	14	2	0	0	0	0.024517	1	6449	6449		26.796	4.8362	1	1113300			57951	18853	40582	40645	63402	63402					0.10377013213314967
PIAIMLWK	8	Unmodified	_PIAIMLWK_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3028259277344	2	486.290974	970.567395	3.3406	0.0016245	-3.1536	-0.0015336	0.18697	9.0922E-05	486.2892694726897	17.438	0.29792	17.438	17.3	17.598	0					8	5	2	0	0	0	0.027866	1	159	159		21.702	2.3424	1	32980	+		57952	26751	40583	40646	63403	63403					0.08093384307153428
PIAKQACFA	9	Unmodified	_PIAKQACFA_					0	0	0			REV__ENSG00000171501|ENST00000373688|OR1N2	REV__ENSG00000171501|ENST00000373688|OR1N2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2696838378906	2	474.752213	947.489873	4.3336	0.0020574	3.2452	0.0015407	7.5788	0.0035981	474.7536600774691	17.435	0.29779	17.435	17.25	17.548	0					8	5	2	0	0	0	0.024541	1	169	169		25.45	3.4903	1	28764	+		57953	26574	40584	40647	63404	63404					0.0140274637095672
PIALHVES	8	Unmodified	_PIALHVES_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.7164001464844	2	433.242535	864.470518	0.22461	9.7313E-05	-0.36505	-0.00015816	-0.14044	-6.0845E-05	433.24215185696073	46.817	0.9502	46.817	46.48	47.43	0					60	25	3	0	0	0	0.027866	1	4750	4750		35.201	0	1	1253400	+		57954	22782	40585	40648	63405	63405					0.03286113351714448
PIALVSQRLL	10	Unmodified	_PIALVSQRLL_					0	0	0			REV__ENST00000372425.8_1_1:43919330-43919504:-|nuORF	REV__ENST00000372425.8_1_1:43919330-43919504:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.35302734375	2	555.355691	1108.69683	-0.12046	-6.6898E-05	-3.7617	-0.0020891	-3.8821	-0.002156	555.3534816537995	99.884	0.65701	99.713	99.316	99.974	-0.17088					48	18	4	0	0	0	1.1286	1	12366	12366		25.574	0	1	851930	+		57955	31204	40586	40649	63406	63406					0.14682857190791765
PIAMEYYNW	9	Unmodified	_PIAMEYYNW_					0	0	0		ENST00000490586.1_1_7:73634828-73639069:+|nuORF;ENSG00000086730|ENST00000460943|LAT2	ENST00000490586.1_1_7:73634828-73639069:+|nuORF	ENST00000490586.1_1_7:73634828-73639069:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.3065795898438	2	593.765517	1185.51648	-0.65196	-0.00038711	-2.7708	-0.0016452	-3.4227	-0.0020323	593.7636730329453	63.385	3.9129	63.157	62.511	66.424	-0.22773					172	98	3	0	0	0	0.024	1	7173	7173		65.803	19.346	1	1340100			57956	1824	40587	40650	63407	63407					-0.06885609528353598
PIAMEYYNW	9	Unmodified	_PIAMEYYNW_					0	0	0		ENST00000490586.1_1_7:73634828-73639069:+|nuORF;ENSG00000086730|ENST00000460943|LAT2	ENST00000490586.1_1_7:73634828-73639069:+|nuORF	ENST00000490586.1_1_7:73634828-73639069:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.3076171875	2	593.765517	1185.51648	-0.35382	-0.00021008	-3.1138	-0.0018489	-3.4676	-0.0020589	593.7634790823901	63.536	3.6666	63.278	62.706	66.373	-0.25824					161	92	3	0	0	0	0.024294	1	7134	7134		65.803	2.2693	1	1671000			57957	1824	40587	40650	63408	63408					-0.06885609528353598
PIARDVAR	8	Unmodified	_PIARDVAR_					0	0	0			REV__ENSG00000103381|ENST00000381774|CPPED1	REV__ENSG00000103381|ENST00000381774|CPPED1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.77496337890625	2	449.266876	896.519199	-0.22639	-0.00010171	0.58395	0.00026235	0.35756	0.00016064	449.26703811454496	23.14	0.33976	23.079	22.889	23.229	-0.06086					10	7	2	0	0	0	0.027866	1	885	885		28.254	10.889	1	55937	+		57958	21382	40588	40651	63409	63409					0.06680026711467235
PIASSRDDF	9	Unmodified	_PIASSRDDF_					0	0	0			REV__nc|ENSG00000173744|P52594-2|AGFG1	REV__nc|ENSG00000173744|P52594-2|AGFG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.8150329589844	2	504.243264	1006.47197	-0.38087	-0.00019205	3.1573	0.001592	2.7764	0.0014	504.24427923737284	75.437	0.90253	75.178	74.575	75.477	-0.25866					29	21	3	0	0	0	0.024381	1	8871	8871		45.952	20.502	1	174290	+		57959	26803	40589	40652	63410	63410					-0.031002973501813358
PIDAPPIEKL	10	Unmodified	_PIDAPPIEKL_					0	0	0			REV__nc|ENSG00000186416|O15226|NKRF	REV__nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.840576171875	2	546.818607	1091.62266	-0.16118	-8.8139E-05	-1.3755	-0.00075213	-1.5366	-0.00084027	546.8188441972952	99.6	0.34325	99.6	99.402	99.746	0					10	7	2	0	0	0	0.03519	1	12752	12752		52.937	20.124	1	75604	+		57960	27852	40590	40653	63411	63411					0.08051469308611559
PIDCLRAET	9	Unmodified	_PIDCLRAET_					0	0	0			REV__ENST00000508692.1_1_5:74669870-74677015:-|nuORF	REV__ENST00000508692.1_1_5:74669870-74677015:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3025817871094	2	509.255317	1016.49608	-0.52364	-0.00026667	-0.29582	-0.00015065	-0.81946	-0.00041732	509.25461189703094	54.857	1.1824	54.955	54.525	55.707	0.098015					53	32	3	0	0	0	0.024427	1	5910	5910		42.396	0	1	301990	+		57961	34071	40591	40654	63412	63412					-0.011507801881634805
PIDGNLTVEA	10	Unmodified	_PIDGNLTVEA_					0	0	0			REV__NCKAP1-PARD3|1|fusion	REV__NCKAP1-PARD3|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3082275390625	2	514.766571	1027.51859	0.57831	0.00029769	3.3513	0.0017251	3.9296	0.0020228	514.7683002082726	87.068	0.93896	86.932	86.197	87.136	-0.13613					30	21	2	0	0	0	0.03519	1	10601	10601		34.173	0	1	101160	+		57962	24623	40592	40655	63413	63413					0.005931424811024044
PIDGTQVTPL	10	Unmodified	_PIDGTQVTPL_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7841186523438	2	520.784764	1039.55498	-0.065214	-3.3962E-05	-0.92283	-0.00048059	-0.98804	-0.00051456	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	1.0393	1	13640	13640		40.778	0	1	7303900	+		57963	24404	40593	40656	63414	63414					0.03678019377821329
PIDGYKKGVH	10	Unmodified	_PIDGYKKGVH_					0	0	0			REV__ENST00000523511.1_1_8:38021190-38029494:-|nuORF	REV__ENST00000523511.1_1_8:38021190-38029494:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.304931640625	2	557.306198	1112.59784	0.2355	0.00013125	-2.9174	-0.0016259	-2.6819	-0.0014947	557.3044354908918	21.195	0.92703	21.004	20.735	21.662	-0.19072					46	18	3	0	0	0	1.1307	1	631	631		26.693	0	1	451370	+		57964	26940	40594	40657	63415	63415					0.04604834225892773
PIDLDPPD	8	Unmodified	_PIDLDPPD_					0	0	0		ENSG00000139910|ENST00000539517|NOVA1;nc|ENSG00000139910|P51513-5|NOVA1;nc|ENSG00000139910|P51513-2|NOVA1	ENSG00000139910|ENST00000539517|NOVA1	ENSG00000139910|ENST00000539517|NOVA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.2540283203125	2	441.216183	880.417813	-0.6279	-0.00027704	2.4587	0.0010848	1.8308	0.00080776	441.2170950733206	37.671	0.73197	37.671	37.305	38.037	0					46	20	3	0	0	0	0.027866	1	3147	3147		26.796	12.132	1	1098700			57965	5375	40595	40658	63416	63416					-0.02717889501764148
PIDLITKGQVK	11	Unmodified	_PIDLITKGQVK_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.3697509765625	2	606.371538	1210.72852	-1.3436	-0.00081472	-1.9222	-0.0011655	-3.2658	-0.0019803	606.3702498471254	92.632	2.8005	92.632	91.772	94.573	0					172	67	4	0	0	0	0.99553	1	11760	11760		37.812	2.6595	1	535620			57966	10726	40596	40659	63417	63417					0.13158805154057518
PIDLITKGQVK	11	Unmodified	_PIDLITKGQVK_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	606.371538	1210.72852	-2.2008	-0.0013345	-1.0933	-0.00066292	-3.2941	-0.0019974	606.3707256009532	92.689	2.8402	92.546	91.661	94.501	-0.14356	-0.070606	0.0014253	NaN	37.812	195	66	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701690			57967	10726	40596	40659							0.13158805154057518
PIDNIYVCKNV	11	Unmodified	_PIDNIYVCKNV_					0	0	0		ENST00000300688.7_1_11:118280211-118280355:+|nuORF	ENST00000300688.7_1_11:118280211-118280355:+|nuORF	ENST00000300688.7_1_11:118280211-118280355:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	639.3339233398438	2	639.331556	1276.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.04	1	106.04	105.54	106.54	0.00014496								0	0	0	1.0659	1	13534	13534		39.253	1.4413	1				57968	11909	40597	40660	63418	63418					0.02129995488598979
PIDRKGTEK	9	Unmodified	_PIDRKGTEK_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1;REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8124389648438	2	522.29583	1042.57711	-0.16811	-8.7801E-05	0.17778	9.2854E-05	0.0096742	5.0528E-06	522.2962212527372	41.812	0.68744	41.835	41.53	42.218	0.023006					24	19	2	0	0	0	0.024418	1	3786	3786		45.972	7.1661	1	504490	+		57969	24428;36753	40598	40661	63419	63419					0.057522438462456194
PIDRRQSI	8	Unmodified	_PIDRRQSI_					0	0	0			REV__ENST00000397195.9_1_17:2541523-2568667:+|nuORF	REV__ENST00000397195.9_1_17:2541523-2568667:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.782470703125	2	492.78289	983.551228	-0.39124	-0.0001928	0.19316	9.5185E-05	-0.19808	-9.7611E-05	492.7830225499618	20.307	0.63772	20.202	19.932	20.569	-0.10477					32	12	4	0	0	0	0.88442	1	503	503		52.299	4.3836	1	613720	+		57970	31764	40599	40662	63420	63420					0.05879394394617066
PIEDHETSPL	10	Unmodified	_PIEDHETSPL_					0	0	0		ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.2769775390625	2	569.274761	1136.53497	1.3076	0.00074441	2.4515	0.0013956	3.7592	0.00214	569.275995448091	82.585	1.8247	82.475	81.881	83.706	-0.11006					111	42	4	0	0	0	0.75995	1	10260	10260		63.306	1.615	1	1661300			57971	8207	40600	40663	63421	63421					-0.027837763527941206
PIEIGLDGR	9	Unmodified	_PIEIGLDGR_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7925109863281	2	485.271824	968.529095	-0.47023	-0.00022819	4.0315	0.0019564	3.5613	0.0017282	485.27393042469265	79.359	0.65793	79.378	79.11	79.768	0.018677					28	15	3	0	0	0	0.024457	1	9769	9769		15.642	0	1	159280	+		57972	20356	40601	40664	63422	63422					0.04357169926197457
PIELLDSPES	10	Unmodified	_PIELLDSPES_					0	0	0			REV__nc|ENSG00000187116|A6NI73-4|LILRA5	REV__nc|ENSG00000187116|A6NI73-4|LILRA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3121948242188	2	550.279512	1098.54447	-0.48256	-0.00026554	-2.4932	-0.001372	-2.9758	-0.0016375	550.2783333079756	19.142	0.49419	19.023	18.804	19.299	-0.11872					16	9	3	0	0	0	0.03519	1	397	397		29.15	0	1	32137	+		57973	27916	40602	40665	63423	63423					-0.0008600806727372401
PIEPLPPLL	9	Unmodified	_PIEPLPPLL_					0	0	0			REV__nc|ENSG00000126012|P41229-2|KDM5C;REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.23565673828125	2	494.807511	987.600469	0.030459	1.5071E-05	-4.4563	-0.002205	-4.4258	-0.0021899	494.8051405013455	22.586	0.5062	22.397	22.147	22.653	-0.18894					16	10	2	0	0	0	0.024517	1	822	822		19.36	0	1	70831	+		57974	22876;19947	40603	40666	63424	63424					0.10617289630863525
PIFAYPHIK	9	Unmodified	_PIFAYPHIK_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.847412109375	2	543.310752	1084.60695	-1.5956	-0.0008669	-1.615	-0.00087746	-3.2106	-0.0017444	543.3100525437638	20.997	0.64325	20.785	20.475	21.118	-0.2128					21	12	3	0	0	0	0.024517	1	598	598		26.796	4.8362	1	115220	+		57975	27829	40604	40667	63425	63425					0.06803227582213367
PIFESDFIQ	9	Unmodified	_PIFESDFIQ_					0	0	0		ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.2915649414062	2	548.27149	1094.52843	0.010698	5.8656E-06	2.9714	0.0016291	2.9821	0.001635	548.2732317829499	71.958	0.99715	71.67	71.502	72.499	-0.28858					48	25	2	0	0	0	0.024263	1	8809	8809		51.335	0	1	589730			57976	6989	40605	40668	63426	63426					-0.015056695135399423
PIFGDKGNL	9	Unmodified	_PIFGDKGNL_					0	0	0			REV__nc|ENSG00000177885|P62993-2|GRB2	REV__nc|ENSG00000177885|P62993-2|GRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2821044921875	2	480.761092	959.507631	-0.2148	-0.00010327	4.4151	0.0021226	4.2003	0.0020193	480.76300870210196	46.239	0.41084	46.291	46.063	46.474	0.051395					25	11	3	0	0	0	0.022756	1	4514	4514		58.782	5.4305	1	251780	+		57977	27150	40606	40669	63427	63427					0.026257848974637454
PIFGDKGNL	9	Unmodified	_PIFGDKGNL_					0	0	0			REV__nc|ENSG00000177885|P62993-2|GRB2	REV__nc|ENSG00000177885|P62993-2|GRB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.761092	959.507631	0.49203	0.00023655	2.6497	0.0012739	3.1417	0.0015104	480.76220370075424	46.24	0.44271	46.144	45.961	46.403	-0.096649	-0.075896	-0.0005507	NaN	58.782	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167320	+		57978	27150	40606	40669							0.026257848974637454
PIFGDKGNL	9	Unmodified	_PIFGDKGNL_					0	0	0			REV__nc|ENSG00000177885|P62993-2|GRB2	REV__nc|ENSG00000177885|P62993-2|GRB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.761092	959.507631	-0.28112	-0.00013515	2.8575	0.0013738	2.5763	0.0012386	480.7624652996602	46.516	0.38044	46.255	46.006	46.387	-0.26118	0.034962	-0.00035089	NaN	58.782	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187700	+		57979	27150	40606	40669							0.026257848974637454
PIFGDKGNL	9	Unmodified	_PIFGDKGNL_					0	0	0			REV__nc|ENSG00000177885|P62993-2|GRB2	REV__nc|ENSG00000177885|P62993-2|GRB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.761092	959.507631	-0.42369	-0.00020369	2.7833	0.0013381	2.3596	0.0011344	480.7624532214708	46.392	0.49876	46.189	46.005	46.504	-0.20226	-0.030199	-0.00042225	NaN	58.782	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176460	+		57980	27150	40606	40669							0.026257848974637454
PIFKEKII	8	Unmodified	_PIFKEKII_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|12|1|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|12|1|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|12|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.28643798828125	2	494.315503	986.616454	0.21983	0.00010866	3.0201	0.0014929	3.2399	0.0016015	494.3167991438419	51.556	0.47749	51.437	51.242	51.719	-0.11875					21	12	2	0	0	0	0.027866	1	5304	5304		71.378	0	1	248600			57981	17828	40607	40670	63428	63428					0.12260995867757174
PIFLIEGPSL	10	Unmodified	_PIFLIEGPSL_					0	0	0			REV__ENST00000569592.1_1_16:27231674-27232048:+|nuORF	REV__ENST00000569592.1_1_16:27231674-27232048:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8134155273438	2	543.3157	1084.61685	-1.92	-0.0010432	-0.34947	-0.00018987	-2.2695	-0.001233	543.8169308810354	92.741	1.3251	92.598	92.285	93.611	-0.14356					46	30	3	0	0	0	0.03519	1	11475	11475		37.159	18.897	1	89063	+		57982	25019	40608	40671	63429	63429					0.07792370796960313
PIFLIEGPSL	10	Unmodified	_PIFLIEGPSL_					0	0	0			REV__ENST00000569592.1_1_16:27231674-27232048:+|nuORF	REV__ENST00000569592.1_1_16:27231674-27232048:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.3157	1084.61685	-0.26457	-0.00014375	-1.6952	-0.000921	-1.9597	-0.0010647	543.3145240170403	92.723	0.67785	92.601	92.382	93.059	-0.12241	0.001643	-0.0010433	NaN	21.96	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73127	+		57983	25019	40608	40671							0.07792370796960313
PIFNEIILH	9	Unmodified	_PIFNEIILH_					0	0	0			REV__ENSG00000101350|ENST00000375712|KIF3B	REV__ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3114624023438	2	548.313492	1094.61243	-1.2947	-0.00070992	-2.9849	-0.0016366	-4.2796	-0.0023466	548.3119799425222	55.988	1.3853	56.085	55.744	57.13	0.097893					116	38	5	0	0	0	0.096521	1	6130	6130		111.65	6.9017	1	29822000	+		57984	21224	40609	40672	63430	63430					0.06890906374064798
PIFSHRTALPL	11	Unmodified	_PIFSHRTALPL_					0	0	0		CACNA1D|p.P1944S|1|0.3|ENSG00000157388|chr3:53808729-53808729|C/T|missense_variant	CACNA1D|p.P1944S|1|0.3|ENSG00000157388|chr3:53808729-53808729|C/T|missense_variant	CACNA1D|p.P1944S|1|0.3|ENSG00000157388|chr3:53808729-53808729|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	417.9105224609375	3	417.91179	1250.71354	-0.18768	-7.8435E-05	-2.751	-0.0011497	-2.9387	-0.0012281	417.91058612874673	21.52	0.90955	21.43	21.158	22.067	-0.090092					51	18	4	0	0	0	0.79085	1	664	664		58.246	13.869	1	579220			57985	203	40610	40673	63431	63431					0.09821358076737852
PIFVADKEVV	10	Unmodified	_PIFVADKEVV_					0	0	0			REV__ENSG00000135720|ENST00000258198|DYNC1LI2;REV__ENSG00000144635|ENST00000273130|DYNC1LI1	REV__ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.817138671875	2	558.818607	1115.62266	-0.91537	-0.00051153	-2.1549	-0.0012042	-3.0703	-0.0017157	558.8174404126007	37.926	0.63305	37.705	37.388	38.021	-0.22149					44	17	4	0	0	0	1.0541	1	3079	3079		38.806	2.3594	1	1677800	+		57986	24347;23572	40611	40674	63432	63432					0.06947469308602194
PIGAMMWVV	9	Unmodified	_PIGAMMWVV_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7868957519531	2	502.258816	1002.50308	0.26252	0.00013185	-0.26428	-0.00013274	-0.0017624	-8.8519E-07	502.25874832285336	87.455	0.33755	87.455	87.236	87.573	0					12	7	2	0	0	0	0.024475	1	11004	11004		29.842	15.177	1	87216	+		57987	25249	40612	40675	63433	63433					0.001928611587118212
PIGDLKKLIV	10	Unmodified	_PIGDLKKLIV_					0	0	0			REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.3111572265625	2	548.360442	1094.70633	-1.311	-0.00071887	-2.0338	-0.0011153	-3.3448	-0.0018342	548.3599099451135	56.05	0.10531	56.148	56.067	56.173	0.097897					4	2	2	0	0	0	0.03519	1	6142	6142		31.53	0	1	79377	+		57988	26197	40613	40676	63434	63434					0.16276625476325535
PIGFLIVKV	9	Unmodified	_PIGFLIVKV_					0	0	0		ENSG00000120324|ENST00000239446|PCDHB10	ENSG00000120324|ENST00000239446|PCDHB10	ENSG00000120324|ENST00000239446|PCDHB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3117980957031	2	493.325871	984.637189	-0.3306	-0.00016309	1.2111	0.00059748	0.88053	0.00043439	493.3261475102701	80.776	0.20036	80.538	80.369	80.569	-0.23783					6	4	2	0	0	0	0.024466	1	9682	9682		12.207	0	1	46593			57989	3807	40614	40677	63435	63435					0.1442558624743242
PIGFLNQI	8	Unmodified	_PIGFLNQI_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.76092529296875	2	451.260728	900.506903	-0.89955	-0.00040593	1.5793	0.00071269	0.67977	0.00030675	451.2614740772854	39.021	1.7047	39.045	38.458	40.163	0.023727					105	46	5	0	0	0	0.027866	1	3228	3228		29.842	1.5873	1	52336000	+		57990	28831	40615	40678	63436	63436					0.05266990248424008
PIGLAQAQKP	10	Unmodified	_PIGLAQAQKP_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7738647460938	2	511.803291	1021.59203	-0.050791	-2.5995E-05	-1.3974	-0.00071517	-1.4481	-0.00074117	511.80249368216346	45.69	0.56803	45.594	45.393	45.961	-0.096649					21	15	2	0	0	0	0.03519	1	4346	4346		58.782	19.529	1	465780	+		57991	27815	40616	40679	63437	63437					0.08209735714228827
PIGLIHSGLD	10	Unmodified	_PIGLIHSGLD_					0	0	0			REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2912292480469	2	511.287474	1020.5604	0.55741	0.000285	-0.42849	-0.00021908	0.12892	6.5917E-05	511.2870805519261	58.844	0.63544	58.603	58.341	58.977	-0.24165					24	15	2	0	0	0	0.03519	1	6435	6435		29.15	0	1	1510300	+		57992	36507	40617	40680	63438	63438					0.05093742960275449
PIGLNKVH	8	Unmodified	_PIGLNKVH_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.26605224609375	2	439.266345	876.518136	0.40112	0.0001762	-0.15652	-6.8755E-05	0.2446	0.00010744	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	0.96719	2	4020	4020;4033		42.474	1.9018	1	3207400	+		57993	26930	40618	40681	63439;63440	63439					0.07493812342568162
PIGLRIPL	8	Unmodified	_PIGLRIPL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-5|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-16|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.7950134277344	2	439.794738	877.574923	-0.026368	-1.1596E-05	0.26368	0.00011596	0.23731	0.00010437	439.79467807716037	66.767	0.95443	66.791	66.517	67.471	0.023911					44	22	3	0	0	0	0.82104	1	7875	7875		57.453	2.688	1	1347600			57994	18041	40619	40682	63441	63441					0.13123859899098989
PIGRARPK	8	Unmodified	_PIGRARPK_					0	0	0			REV__ENSG00000100167|ENST00000644076|SEPTIN3	REV__ENSG00000100167|ENST00000644076|SEPTIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.20941162109375	2	447.785236	893.555919	-0.82113	-0.00036769	0.84249	0.00037725	0.021361	9.565E-06	447.785430177869	39.296	0.3912	39.32	39.099	39.49	0.023727					16	10	2	0	0	0	0.027866	1	3284	3284		18.324	0.95945	1	107970	+		57995	21059	40620	40683	63442	63442					0.10488323328024762
PIGSDELLEI	10	Unmodified	_PIGSDELLEI_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8202514648438	2	543.289879	1084.56521	-0.2405	-0.00013066	0.181	9.8336E-05	-0.059504	-3.2328E-05	543.2897931841736	47.378	0.62238	47.225	47.015	47.637	-0.153					29	17	2	0	0	0	0.03519	1	4795	4795		34.173	8.5985	1	422240	+		57996	29558	40621	40684	63443	63443					0.026305823123948358
PIGTPTNFAP	10	Unmodified	_PIGTPTNFAP_					0	0	0			REV__ENSG00000198162|ENST00000356554|MAN1A2;REV__ENSG00000117643|ENST00000374332|MAN1C1;REV__ENST00000473891.1_1_1:26013020-26085338:+|nuORF	REV__ENSG00000117643|ENST00000374332|MAN1C1	MSMS	OPSCC_40_ClassI_Rep-1	4	507.7666931152344	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.41	1	17.256	16.756	17.756	-0.15403								0	0	0	0.75365	1	179	179		27.882	3.3631	1		+		57997	28392;22367;33258	40622	40685	63444	63444					0.011977675518892283
PIGVEALLA	9	Unmodified	_PIGVEALLA_					0	0	0			REV__RGS11|p.A421V|1|0.49|ENSG00000076344|chr16:269530-269530|G/A|missense_variant	REV__RGS11|p.A421V|1|0.49|ENSG00000076344|chr16:269530-269530|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.76800537109375	2	441.768386	881.522219	-0.32178	-0.00014215	-0.70805	-0.00031279	-1.0298	-0.00045495	441.7681351071089	102.79	1.3357	102.79	102.48	103.82	0					96	32	5	0	0	0	0.85941	1	13219	13219		35.201	1.6851	1	28165000	+		57998	37436	40623	40686	63445	63445					0.07671857045613706
PIGWKQSPE	9	Unmodified	_PIGWKQSPE_					0	0	0		ENST00000564501.5_1_16:23568572-23568743:-|nuORF	ENST00000564501.5_1_16:23568572-23568743:-|nuORF	ENST00000564501.5_1_16:23568572-23568743:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.79736328125	2	521.271824	1040.5291	-0.64269	-0.00033502	4.2327	0.0022064	3.59	0.0018714	521.2737908556883	56.406	0.32331	56.504	56.397	56.72	0.097897					13	8	2	0	0	0	0.024436	1	6205	6205		38.806	3.6054	1	319850			57999	16891	40624	40687	63446	63446					0.010451699261693648
PIHKWAKDL	9	Unmodified	_PIHKWAKDL_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|17|1|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|17|1|sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|17|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.3054809570312	2	554.319109	1106.62366	0.28726	0.00015923	3.5333	0.0019586	3.8206	0.0021178	554.321021400275	75.758	0.21753	75.77	75.645	75.863	0.011635					7	5	2	0	0	0	0.024405	1	9243	9243		35.618	0	1	121940			58000	17857	40625	40688	63447	63447					0.07461728468183537
PIHRAHLVAVV	11	Unmodified	_PIHRAHLVAVV_					0	0	0			REV__ENST00000502486.5_2_4:42153705-42154329:-|nuORF	REV__ENST00000502486.5_2_4:42153705-42154329:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.3692016601562	2	606.372207	1210.72986	-0.18685	-0.0001133	-4.3541	-0.0026402	-4.541	-0.0027535	606.3694060704071	92.814	2.8002	92.67	91.745	94.545	-0.14411					184	65	4	0	0	0	1.0442	1	11385	11385		26.693	3.6504	1	585740	+		58001	33929	40626	40689	63448	63448					0.132924840334681
PIIHYPNEV	9	Unmodified	_PIIHYPNEV_					0	0	0		nc|ENSG00000130347|Q8WWV3-3|RTN4IP1;ENSG00000130347|ENST00000369063|RTN4IP1	nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8064575195312	2	541.287474	1080.5604	-0.88008	-0.00047638	-0.54261	-0.00029371	-1.4227	-0.00077009	541.2876104306425	52.862	0.46124	52.862	52.513	52.974	0					26	11	3	0	0	0	0.024381	1	5649	5649		45.952	6.6991	1	402790			58002	4412	40627	40690	63449	63449					0.023337429602634074
PIILFRLVSR	10	Unmodified	_PIILFRLVSR_					0	0	0			REV__ENST00000337190.6_1_4:2251729-2252320:-|nuORF	REV__ENST00000337190.6_1_4:2251729-2252320:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	405.2652282714844	3	405.264164	1212.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.35	1	113.23	112.73	113.73	-0.12832								0	0	0	0.77718	1	13737	13737		16.007	8.2023	1		+		58003	30557	40628	40691	63450	63450					0.17278825353105276
PIIPFRETI	9	Unmodified	_PIIPFRETI_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.3109741210938	2	543.321317	1084.62808	-0.30541	-0.00016593	-3.9799	-0.0021624	-4.2853	-0.0023283	543.3180855807216	43.143	0.40263	43.174	43.01	43.413	0.030827					17	10	3	0	0	0	0.024457	1	3967	3967		29.15	15.012	1	137670			58004	5431	40629	40692	63451	63451					0.08915192891095103
PIISLQPAP	9	Unmodified	_PIISLQPAP_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7561340332031	2	468.28166	934.548768	-0.13259	-6.2091E-05	-2.9391	-0.0013763	-3.0717	-0.0014384	468.2801412520158	93.729	1.7561	93.725	93.368	95.124	-0.0042038					69	41	3	0	0	0	0.024523	1	11957	11957		21.96	0	1	1192900			58005	3671	40630	40693	63452	63452					0.07887545936944207
PIISLQPAP	9	Unmodified	_PIISLQPAP_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.28166	934.548768	-0.94713	-0.00044352	-2.0241	-0.00094787	-2.9713	-0.0013914	468.280481256783	93.716	0.99483	93.576	93.135	94.13	-0.13995	-0.12861	0.0009344	NaN	21.96	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368290			58006	3671	40630	40693							0.07887545936944207
PIISLQPAP	9	Unmodified	_PIISLQPAP_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.28166	934.548768	0.33679	0.00015771	-3.4234	-0.0016031	-3.0866	-0.0014454	468.279971732849	93.684	0.94114	93.562	93.278	94.219	-0.12215	-0.1423	-0.00037608	NaN	21.96	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478940			58007	3671	40630	40693							0.07887545936944207
PIISLQPAP	9	Unmodified	_PIISLQPAP_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.28166	934.548768	-0.29691	-0.00013904	-2.9094	-0.0013624	-3.2063	-0.0015014	468.2802313753403	93.789	0.82092	93.641	93.348	94.169	-0.14771	-0.063142	0.00010534	NaN	21.96	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404010			58008	3671	40630	40693							0.07887545936944207
PIITSRIL	8	Unmodified	_PIITSRIL_					0	0	0		ELAVL2|p.R150P|1|0.07|ENSG00000107105|chr9:23704956-23704956|C/G|missense_variant	ELAVL2|p.R150P|1|0.07|ENSG00000107105|chr9:23704956-23704956|C/G|missense_variant	ELAVL2|p.R150P|1|0.07|ENSG00000107105|chr9:23704956-23704956|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7984313964844	2	456.797478	911.580402	-0.88522	-0.00040436	0.65588	0.0002996	-0.22934	-0.00010476	456.79772240899496	28.4	1.1198	28.155	27.718	28.838	-0.24524					69	26	5	0	0	0	0.6248	1	1637	1637		73.975	9.7675	1	5730900			58009	697	40631	40694	63453	63453					0.12107538690884212
PIIVKVVLDS	10	Unmodified	_PIIVKVVLDS_					0	0	0			REV__ENST00000515208.1_3_5:43613212-43613284:+|nuORF	REV__ENST00000515208.1_3_5:43613212-43613284:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.3087768554688	2	541.844625	1081.6747	-1.1797	-0.00063924	-3.3042	-0.0017904	-4.4839	-0.0024296	541.8422466266816	43.508	0.68824	43.369	42.921	43.609	-0.13929					37	18	3	0	0	0	0.03519	1	3989	3989		19.997	0	1	477560	+		58010	34190	40632	40695	63454	63454					0.13712632722376839
PIIYAQIP	8	Unmodified	_PIIYAQIP_					0	0	0			REV__XPNPEP1|p.S77L|1|0.21|ENSG00000108039|chr10:109907707-109907707|G/A|missense_variant	REV__XPNPEP1|p.S77L|1|0.21|ENSG00000108039|chr10:109907707-109907707|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.7372741699219	2	457.770929	913.527304	0.01229	5.6261E-06	2.316	0.0010602	2.3283	0.0010658	457.7735692562431	21.505	0.48677	21.314	21.029	21.516	-0.19072					12	9	2	0	0	0	0.027866	1	661	661		23.037	16.301	1	29149	+		58011	21709	40633	40696	63455	63455					0.06708160908226546
PIIYHNIVL	9	Unmodified	_PIIYHNIVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3215942382812	2	541.32386	1080.63317	-0.98464	-0.00053301	-3.802	-0.0020581	-4.7867	-0.0025911	541.3217675287749	60.274	2.0855	60.073	59.356	61.442	-0.2004					144	55	4	0	0	0	0.4855	1	6898	6898		60.294	2.064	1	23185000			58012	9730	40634	40697	63456	63456					0.09607496753687883
PIIYHNIVL	9	Unmodified	_PIIYHNIVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.3220825195312	2	541.32386	1080.63317	-1.8614	-0.0010076	-2.9079	-0.0015741	-4.7693	-0.0025818	541.3222634997059	59.951	1.9031	60.03	59.419	61.322	0.078888					140	50	4	0	0	0	0.33184	3	6788	6788;6800;6812		71.378	11.26	1	24287000			58013	9730	40634	40697	63457;63458;63459	63457					0.09607496753687883
PIIYHNIVL	9	Unmodified	_PIIYHNIVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.32386	1080.63317	0.42095	0.00022787	-0.98178	-0.00053146	-0.56082	-0.00030359	541.3226996321478	60.09	0.25526	59.893	59.728	59.983	-0.19742	-0.030023	0.0029825	NaN	71.378	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91006			58014	9730	40634	40697							0.09607496753687883
PIIYHNIVL	9	Unmodified	_PIIYHNIVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.32386	1080.63317	0.12907	6.9869E-05	-0.057769	-3.1272E-05	0.071301	3.8597E-05	541.3237226867055	59.849	0.2971	59.673	59.516	59.813	-0.1761	-0.24945	0.0039828	NaN	71.378	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97576			58015	9730	40634	40697							0.09607496753687883
PIIYHNIVL	9	Unmodified	_PIIYHNIVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;CFAP54|p.T1586Ffs*23|1|0.4|ENSG00000188596|chr12:96649952-96649955|ACAA/-|frameshift_variant	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.32386	1080.63317	-1.0202	-0.00055226	0.66847	0.00036186	-0.35173	-0.0001904	541.3236384954606	60.066	0.33353	59.818	59.648	59.982	-0.24842	-0.10464	0.0047691	NaN	71.378	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126410			58016	9730	40634	40697							0.09607496753687883
PIKDDTQET	9	Unmodified	_PIKDDTQET_					0	0	0			REV__ENST00000475515.1_1_2:176794697-176796849:-|nuORF	REV__ENST00000475515.1_1_2:176794697-176796849:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7720336914062	2	523.753661	1045.49277	-0.36179	-0.00018949	-0.95062	-0.00049789	-1.3124	-0.00068738	523.7529000091668	73.029	1.0128	72.753	71.786	72.799	-0.2769					27	23	2	0	0	0	0.024374	1	8504	8504		49.442	0	1	85270	+		58017	24325	40635	40698	63460	63460					-0.02815751761181673
PIKGCAKNN	9	Unmodified	_PIKGCAKNN_					0	0	0			REV__ENSG00000011376|ENST00000645846|LARS2	REV__ENSG00000011376|ENST00000645846|LARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.77197265625	2	472.752744	943.490935	-0.6682	-0.00031589	-0.41882	-0.000198	-1.087	-0.00051389	472.7523985966449	38.965	0.47865	38.989	38.727	39.206	0.023727					31	12	3	0	0	0	0.024	1	3229	3229		55.504	7.8469	1	620520	+		58018	19927	40636	40699	63461	63461					0.01692960739865157
PIKGLAGYR	9	Unmodified	_PIKGLAGYR_					0	0	0		ENSG00000173212|ENST00000369500|MAB21L3;MAB21L3|p.T73K|1|0.28|ENSG00000173212|chr1:116124094-116124094|C/A|missense_variant	ENSG00000173212|ENST00000369500|MAB21L3	ENSG00000173212|ENST00000369500|MAB21L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7917785644531	2	487.792727	973.5709	0.34339	0.0001675	-3.8201	-0.0018634	-3.4767	-0.0016959	487.79092235400344	96.371	1.7522	96.235	95.853	97.605	-0.1367					89	39	4	0	0	0	0.98697	1	11932	11932		23.042	0.0057756	1	805910			58019	8354	40637	40700	63462	63462					0.08305770405377189
PIKKGKKR	8	Unmodified	_PIKKGKKR_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.8341979980469	2	477.832186	953.649819	0.5983	0.00028588	2.3175	0.0011074	2.9158	0.0013933	477.83322218707116	105.71	0.61673	105.54	105.3	105.91	-0.16132					63	22	4	0	0	0	1.0574	1	13144	13144		20.482	0	1	743490			58020	18271	40638	40701	63463	63463					0.17114042430318932
PIKLIQTEL	9	Unmodified	_PIKLIQTEL_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-11|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2734375	2	527.828975	1053.6434	0.13806	7.2873E-05	-0.47694	-0.00025174	-0.33888	-0.00017887	527.82859260942	92.598	1.1712	92.606	92.264	93.435	0.0077286					65	27	4	0	0	0	0.024374	1	11633	11633		19.104	0	1	960610			58021	18160	40639	40702	63464	63464					0.11872059688266745
PIKRQGAR	8	Unmodified	_PIKRQGAR_					0	0	0			REV__ENST00000556408.5_1_14:71996071-72040486:+|nuORF	REV__ENST00000556408.5_1_14:71996071-72040486:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.27886962890625	2	463.288143	924.561733	0.19448	9.0101E-05	3.6556	0.0016936	3.8501	0.0017837	463.28959411968856	51.409	0.83464	51.409	51.143	51.977	0					34	23	2	0	0	0	0.027866	1	5408	5408		26.796	2.5934	1	336390	+		58022	35036	40640	40703	63465	63465					0.0964342183970075
PIKSSEVQI	9	Unmodified	_PIKSSEVQI_					0	0	0		ENSG00000163075|ENST00000413369|CFAP221;nc|ENSG00000163075|Q4G0U5-3|CFAP221;nc|ENSG00000163075|Q4G0U5-2|CFAP221;ENST00000413057.6_1_2:120317267-120388537:+|nuORF	ENSG00000163075|ENST00000413369|CFAP221	ENSG00000163075|ENST00000413369|CFAP221	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7876281738281	2	500.787307	999.560061	0.63598	0.00031849	-0.48179	-0.00024127	0.15419	7.7218E-05	500.7867677057334	72.523	0.88277	72.242	71.991	72.873	-0.28124					37	21	2	0	0	0	0.26966	1	8811	8811		79.713	0	1	4362200			58023	7032	40641	40704	63466	63466					0.060263232404167866
PIKVDEIPF	9	Unmodified	_PIKVDEIPF_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.2974853515625	2	529.30005	1056.58555	-0.1923	-0.00010178	-4.149	-0.0021961	-4.3413	-0.0022979	529.2973186141925	106.81	0.56963	106.69	106.47	107.04	-0.12381					36	17	3	0	0	0	0.88411	1	13269	13269		33.516	3.1979	1	174870	+		58024	23961	40642	40705	63467	63467					0.05951797762827482
PIKWVITDA	9	Unmodified	_PIKWVITDA_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7687377929688	2	521.800217	1041.58588	-0.060852	-3.1753E-05	-4.0267	-0.0021011	-4.0875	-0.0021329	521.7980227239866	52.413	0.43213	52.226	51.96	52.393	-0.18633					27	10	3	0	0	0	0.024	1	5455	5455		45.952	0	1	993980			58025	8984	40643	40706	63468	63468					0.0667521748271156
PILAFFVPV	9	Unmodified	_PILAFFVPV_					0	0	0			REV__SLC15A4|p.L326F|1|0.15|ENSG00000139370|chr12:128809976-128809976|C/A|missense_variant	REV__SLC15A4|p.L326F|1|0.15|ENSG00000139370|chr12:128809976-128809976|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2852478027344	2	501.804771	1001.59499	-1.0325	-0.00051814	1.1352	0.00056962	0.10261	5.1489E-05	501.805104977316	44.165	0.36214	44.165	44.089	44.451	0					15	10	2	0	0	0	0.024475	1	4180	4180		29.842	8.8946	1	285270	+		58026	37492	40644	40707	63469	63469					0.09425610839036835
PILDSFKVD	9	Unmodified	_PILDSFKVD_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2921752929688	2	517.281857	1032.54916	-0.68964	-0.00035674	3.4464	0.0017828	2.7568	0.001426	517.2834249388542	63.142	0.79259	63.142	62.729	63.522	0					43	20	4	0	0	0	0.024477	1	7327	7327		35.618	0.41757	1	822930	+		58027	28831	40645	40708	63470	63470					0.03418920866147346
PILFKFIPQ	9	Unmodified	_PILFKFIPQ_					0	0	0			REV__ALOX12|p.H383Q|1|0.19|ENSG00000108839|chr17:7001799-7001799|C/A|missense_variant	REV__ALOX12|p.H383Q|1|0.19|ENSG00000108839|chr17:7001799-7001799|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.7940673828125	2	551.836603	1101.65865	-0.45538	-0.00025129	-4.0628	-0.002242	-4.5181	-0.0024933	551.8342665100706	42.48	0.41678	42.348	42.149	42.565	-0.13219					16	11	2	0	0	0	0.024466	1	3919	3919		25.45	0	1	105610	+		58028	19110	40646	40709	63471	63471					0.11188971276123993
PILGAILIDL	10	Unmodified	_PILGAILIDL_					0	0	0			REV__nc|ENSG00000105609|O75023-2|LILRB5	REV__nc|ENSG00000105609|O75023-2|LILRB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2852783203125	2	519.333893	1036.65323	0.17814	9.2512E-05	-2.6749	-0.0013891	-2.4967	-0.0012966	519.3323668969485	50.773	0.7109	50.662	50.379	51.09	-0.11163					43	18	3	0	0	0	0.03519	1	5245	5245		27.882	5.9224	1	926250	+		58029	21541	40647	40710	63472	63472					0.13637247693668542
PILGSPVYSS	10	Unmodified	_PILGSPVYSS_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8443298339844	2	510.274032	1018.53351	0.10248	5.2295E-05	-2.805	-0.0014313	-2.7026	-0.001379	510.7736291007933	76.072	0.26506	76.083	75.901	76.166	0.011635					9	6	2	0	0	0	0.03519	1	9293	9293		53.351	24.202	1	199810			58030	3304	40648	40711	63473	63473					0.02498634349092299
PILIAVKW	8	Unmodified	_PILIAVKW_					0	0	0			REV__ENSG00000158470|ENST00000371711|B4GALT5	REV__ENSG00000158470|ENST00000371711|B4GALT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.29058837890625	2	470.304939	938.595324	-0.64022	-0.0003011	1.5151	0.00071254	0.87485	0.00041145	470.3055406482426	28.017	0.23323	27.865	27.689	27.922	-0.15195					8	5	2	0	0	0	0.027866	1	1564	1564		23.037	7.4005	1	61395	+		58031	25197	40649	40712	63474	63474					0.12357030558894166
PILKTRKS	8	Unmodified	_PILKTRKS_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.22760009765625	2	471.808377	941.6022	-1.2053	-0.00056869	-1.138	-0.00053694	-2.3434	-0.0011056	471.80726110589	33.439	0.67486	33.274	32.918	33.593	-0.16565					34	16	3	0	0	0	0.027866	1	2405	2405		24.203	11.996	1	335900			58032	674	40650	40713	63475	63475					0.12906343439476586
PILKTRKS	8	Unmodified	_PILKTRKS_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.808377	941.6022	-0.20223	-9.5416E-05	-1.6376	-0.00077262	-1.8398	-0.00086804	471.80701807951186	33.479	0.69727	33.278	32.977	33.675	-0.20019	0.0024113	-0.00023402	NaN	24.203	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344960			58033	674	40650	40713							0.12906343439476586
PILKVFNR	8	Unmodified	_PILKVFNR_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7799987792969	2	493.810919	985.607286	-0.84378	-0.00041667	-0.28752	-0.00014198	-1.1313	-0.00055865	493.8100727854206	49.676	0.1863	49.75	49.654	49.84	0.074196					5	4	2	0	0	0	0.027866	1	5088	5088		29.842	21.019	1	49104			58034	3091	40651	40714	63476	63476					0.11390647302084744
PILLARRQL	9	Unmodified	_PILLARRQL_					0	0	0		ENST00000373685.1_1_6:36853700-36860566:+|nuORF;ENST00000480824.6_1_6:36853700-36862364:+|nuORF	ENST00000373685.1_1_6:36853700-36860566:+|nuORF	ENST00000373685.1_1_6:36853700-36860566:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.334228515625	2	540.356025	1078.6975	-0.75045	-0.00040551	-4.1348	-0.0022342	-4.8852	-0.0026398	540.3537483170155	79.264	0.53775	79.264	78.951	79.489	0					19	12	2	0	0	0	0.024412	1	9806	9806		50.025	19.521	1	76132			58035	13086	40652	40715	63477	63477					0.16129696630491708
PILLARRQL	9	Unmodified	_PILLARRQL_					0	0	0		ENST00000373685.1_1_6:36853700-36860566:+|nuORF;ENST00000480824.6_1_6:36853700-36862364:+|nuORF	ENST00000373685.1_1_6:36853700-36860566:+|nuORF	ENST00000373685.1_1_6:36853700-36860566:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.2896118164062	2	540.356025	1078.6975	-1.0351	-0.00055934	0.13817	7.4664E-05	-0.89695	-0.00048467	540.3559921452239	53.694	0.34881	53.79	53.556	53.905	0.095669					16	9	2	0	0	0	0.024541	1	5735	5735		20.482	0	1	324300			58036	13086	40652	40715	63478	63478					0.16129696630491708
PILLGSLAHQ	10	Unmodified	_PILLGSLAHQ_					0	0	0		ENST00000428288.2_1_7:27565835-27702463:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	ENST00000428288.2_1_7:27565835-27702463:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2868041992188	2	524.811116	1047.60768	0.9312	0.0004887	-1.0707	-0.00056194	-0.13954	-7.3231E-05	524.810426391078	54.783	0.44059	54.577	54.318	54.758	-0.20613					27	11	3	0	0	0	0.03519	1	5802	5802		42.396	0	1	583940			58037	2754	40653	40716	63479	63479					0.08578022231267823
PILNCRVLGLL	11	Unmodified	_PILNCRVLGLL_					0	0	0		ENST00000437621.6_1_7:1624188-1624512:+|nuORF	ENST00000437621.6_1_7:1624188-1624512:+|nuORF	ENST00000437621.6_1_7:1624188-1624512:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8722534179688	2	605.870651	1209.72675	0.74452	0.00045108	1.7411	0.0010549	2.4856	0.001506	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	0.90489	1	12232	12232		51.335	6.9583	1	1081300			58038	14296	40654	40717	63480	63480					0.13027472864496303
PILNSLYW	8	Unmodified	_PILNSLYW_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.3067932128906	2	503.273835	1004.53312	0.30391	0.00015295	-0.87184	-0.00043877	-0.56792	-0.00028582	503.77515071618217	23.282	0.32646	23.08	22.826	23.153	-0.20193					9	6	2	0	0	0	0.027866	1	902	902		20.482	0	1	38896	+		58039	27297	40655	40718	63481	63481					0.031032594198904917
PILRPAGTG	9	Unmodified	_PILRPAGTG_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5;PLEKHG5|p.E613Kfs*6|1|0.31|ENSG00000171680|chr1:6470517-6470517|C/-|frameshift_variant	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7877502441406	2	441.263802	880.513051	-0.77499	-0.00034198	0.7519	0.00033179	-0.023095	-1.0191E-05	441.2640131853389	43.757	0.68722	43.757	43.261	43.948	0					43	18	3	0	0	0	0.024506	1	4053	4053		16.473	0	1	584510			58040	8181	40656	40719	63482	63482					0.06801508479952645
PILSKSKSYK	10	Unmodified	_PILSKSKSYK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8432006835938	2	575.845156	1149.67576	0.025684	1.479E-05	-3.0728	-0.0017694	-3.0471	-0.0017547	575.8433115256851	102.77	0.5423	102.59	102.33	102.87	-0.17034					32	12	4	0	0	0	1.0271	2	12763	12751;12763		42.396	10.441	1	397440			58041	1335	40657	40720	63483;63484	63484					0.10690847091291289
PILTFNTN	8	Unmodified	_PILTFNTN_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.7334289550781	2	460.247818	918.481082	0.12071	5.5558E-05	2.8434	0.0013087	2.9641	0.0013642	460.2488511952925	69.605	0.82059	69.605	69.094	69.915	0					34	20	2	0	0	0	0.027866	1	8330	8330		44.117	3.5442	1	89173	+		58042	28646	40658	40721	63485	63485					0.018580960061285623
PILTFNTN	8	Unmodified	_PILTFNTN_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.7342224121094	2	460.247818	918.481082	0.72943	0.00033572	0.74412	0.00034248	1.4736	0.0006782	460.24802936918803	68.261	1.2441	68.28	68.004	69.249	0.018913					58	32	2	0	0	0	0.027866	1	8235	8235		24.203	0	1	927590	+		58043	28646	40658	40721	63486	63486					0.018580960061285623
PILTFNTN	8	Unmodified	_PILTFNTN_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	460.247818	918.481082	0.14382	6.6194E-05	1.1231	0.00051689	1.2669	0.00058308	460.2482231176126	68.249	1.2635	68.249	67.831	69.094	0	-0.017204	0.00016096	NaN	24.203	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	816210	+		58044	28646	40658	40721							0.018580960061285623
PILTFNTN	8	Unmodified	_PILTFNTN_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	460.247818	918.481082	0.29031	0.00013361	1.0138	0.00046662	1.3041	0.00060023	460.24819531005346	68.563	1.155	68.271	67.974	69.129	-0.29267	0.0039491	6.0422E-05	NaN	24.203	52	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922460	+		58045	28646	40658	40721							0.018580960061285623
PILVEAID	8	Unmodified	_PILVEAID_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7|PEG10;ENST00000482108.1_2_7:94293788-94294991:+|nuORF	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.26934814453125	2	435.252569	868.490584	-0.31056	-0.00013517	-2.5914	-0.0011279	-2.902	-0.0012631	435.25136148662136	23.136	0.92166	23.212	22.512	23.434	0.076241					29	20	2	0	0	0	0.027866	1	845	845		19.36	1.0356	1	79910			58046	10796	40659	40722	63487	63487					0.05107864291653641
PILVEVHYNK	10	Unmodified	_PILVEVHYNK_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	606.8182373046875	2	606.342781	1210.67101	-0.24777	-0.00015023	-3.4539	-0.0020942	-3.7017	-0.0022445	606.3393739284303	101.41	0.36507	101.28	101.09	101.45	-0.13156					9	7	2	0	0	0	0.03519	1	12587	12587		34.173	2.6427	1	25673	+		58047	24611;36769	40660	40723	63488	63488					0.07409962948509019
PILYVIQNE	9	Unmodified	_PILYVIQNE_					0	0	0		ENSG00000104946|ENST00000221543|TBC1D17;nc|ENSG00000104946|Q9HA65-3|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF	ENSG00000104946|ENST00000221543|TBC1D17	ENSG00000104946|ENST00000221543|TBC1D17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8314208984375	2	544.802957	1087.59136	-0.040628	-2.2134E-05	-3.2447	-0.0017677	-3.2853	-0.0017899	545.3020015751151	71.315	0.38079	71.315	71.223	71.604	0					14	9	2	0	0	0	0.024412	1	8661	8661		31.955	0	1	346130			58048	2622	40661	40724	63489	63489					0.05106896274514838
PIMKATRKP	9	Unmodified	_PIMKATRKP_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3023681640625	2	521.315512	1040.61647	-0.3232	-0.00016849	0.64821	0.00033792	0.32501	0.00016943	521.8156821313617	68.931	0.74792	68.946	68.532	69.28	0.015129					44	19	3	0	0	0	0.024457	1	8252	8252		29.15	0	1	337660	+		58049	20528	40662	40725	63490	63490					0.09778672596098659
PIMKATRKP	9	Unmodified	_PIMKATRKP_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.315512	1040.61647	0.49652	0.00025885	1.9438	0.0010133	2.4403	0.0012722	521.817126977496	69.13	0.25145	68.887	68.79	69.041	-0.24277	-0.0018002	0.00075911	NaN	41.427	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75625	+		58050	20528	40662	40725							0.09778672596098659
PIMKKAVI	8	Unmodified	_PIMKKAVI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.29217529296875	2	450.290974	898.567395	3.579	0.0016116	0.77738	0.00035005	4.3564	0.0019616	450.29115512166095	17.965	0.48938	17.965	17.746	18.235	0					17	9	3	0	0	0	1.0572	1	236	236		28.254	5.2118	1	129830			58051	1567	40663	40726	63491	63491					0.11405384307136046
PIMRTLVL	8	Unmodified	_PIMRTLVL_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718811035156	2	471.793881	941.573209	0.73755	0.00034797	-2.6407	-0.0012459	-1.9032	-0.0008979	471.7916557439655	39.99	0.25579	39.99	39.843	40.099	0					10	6	2	0	0	0	0.027866	1	3493	3493		63.306	0	1	43673	+		58052	27311	40664	40727	63492	63492					0.10008482818807352
PIMSEKLQ	8	Unmodified	_PIMSEKLQ_					0	0	0			REV__nc|ENSG00000166845|Q8IYD9|LAS2	REV__nc|ENSG00000166845|Q8IYD9|LAS2	MSMS	OPSCC_39_ClassI_Rep-2	2	473.2561950683594	2	473.257328	944.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.574	1	62.335	61.835	62.835	-0.23926								0	0	0	1.1164	1	7257	7257		13.775	0	1		+		58053	26064	40665	40728	63493	63493					0.025633093055375866
PINDTWIQA	9	Unmodified	_PINDTWIQA_					0	0	0		ENST00000506153.5_1_16:2889659-2891196:-|nuORF;ENST00000476276.5_1_16:2889659-2890331:-|nuORF	ENST00000506153.5_1_16:2889659-2891196:-|nuORF	ENST00000506153.5_1_16:2889659-2891196:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297119140625	2	529.269281	1056.52401	-0.83161	-0.00044015	4.385	0.0023208	3.5534	0.0018807	529.2714353424501	56.422	0.58492	56.258	55.986	56.571	-0.16431					29	15	2	0	0	0	0.024205	1	6239	6239		44.117	0	1	876900			58054	15084	40666	40729	63494	63494					-0.0019913393641672883
PINITLPSI	9	Unmodified	_PINITLPSI_					0	0	0			REV__nc|ENSG00000141568|Q01167-2|FOXK2	REV__nc|ENSG00000141568|Q01167-2|FOXK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2948913574219	2	484.294768	966.574983	-0.49564	-0.00024004	0.5208	0.00025222	0.025164	1.2187E-05	484.29499537271585	85.139	1.1595	85.082	84.732	85.891	-0.057617					70	27	4	0	0	0	0.15366	1	10627	10627		98.629	5.4339	1	1940500	+		58055	24106	40667	40730	63495	63495					0.09035815108438783
PINLLEAL	8	Unmodified	_PINLLEAL_					0	0	0			REV__ENSG00000197888|ENST00000317746|UGT2B17	REV__ENSG00000197888|ENST00000317746|UGT2B17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.76806640625	2	441.768386	881.522219	0.10055	4.4418E-05	-1.228	-0.00054249	-1.1275	-0.00049807	441.76794852794825	102.93	1.5122	102.8	102.45	103.96	-0.12723					102	35	5	0	0	0	1.0574	2	12771	12771;12832		26.796	1.3459	1	19625000	+		58056	28357	40668	40731	63496;63497	63496					0.07671857045602337
PINSPLNNL	9	Unmodified	_PINSPLNNL_					0	0	0			REV__ENSG00000156050|ENST00000286544|FAM161B	REV__ENSG00000156050|ENST00000286544|FAM161B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79290771484375	2	491.271824	980.529095	-0.004314	-2.1193E-06	-0.21845	-0.00010732	-0.22277	-0.00010944	491.2722672261763	61.576	0.42155	61.576	61.374	61.796	0					17	10	3	0	0	0	0.022832	1	7127	7127		71.877	18.526	1	132790	+		58057	25048	40669	40732	63498	63498					0.03805169926192775
PIPEPKTKD	9	Unmodified	_PIPEPKTKD_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3;nc|ENSG00000166900|Q13277-3|STX3;ENSG00000166900|ENST00000337979|STX3	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7888793945312	2	512.787307	1023.56006	-0.43267	-0.00022187	4.0627	0.0020833	3.63	0.0018614	512.7893565007613	81.273	1.9932	81.131	80.656	82.649	-0.14249					121	46	4	0	0	0	0.70186	1	9794	9794		45.952	5.3793	1	7232400			58058	7625	40670	40733	63499	63499					0.0492232324043016
PIPGAKPLPV	10	Unmodified	_PIPGAKPLPV_					0	0	0		ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF	ENSG00000175866|ENST00000428708|BAIAP2	ENSG00000175866|ENST00000428708|BAIAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2494201660156	2	494.813128	987.611703	-0.83099	-0.00041119	0.32586	0.00016124	-0.50513	-0.00024995	494.8131309498415	45.117	0.92519	44.968	44.322	45.247	-0.1488					60	26	3	0	0	0	0.03519	1	4323	4323		24.203	0	1	495730			58059	8593	40671	40734	63500	63500					0.11740111724998314
PIPKSLTSKY	10	Unmodified	_PIPKSLTSKY_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2-CCDC12|3|fusion	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3299560546875	2	567.331882	1132.64921	0.14889	8.447E-05	-3.8286	-0.0021721	-3.6797	-0.0020876	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.1307	1	10825	10825		26.693	3.1702	1	5699400	+		58060	27410;37479	40672	40735	63501	63501					0.0881915819995811
PIPKVGLT	8	Unmodified	_PIPKVGLT_					0	0	0			REV__ENSG00000169208|ENST00000641040|OR10G3	REV__ENSG00000169208|ENST00000641040|OR10G3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.7346496582031	2	412.765646	823.516739	0.99672	0.00041141	2.7975	0.0011547	3.7942	0.0015661	412.766624371435	41.402	1.3299	41.402	40.657	41.987	0					60	37	3	0	0	0	0.027866	1	3731	3731		7.1934	2.8771	1	185650	+		58061	26332	40673	40736	63502	63502					0.09792178253815109
PIPKVGLT	8	Unmodified	_PIPKVGLT_					0	0	0			REV__ENSG00000169208|ENST00000641040|OR10G3	REV__ENSG00000169208|ENST00000641040|OR10G3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	412.765646	823.516739	0.38131	0.00015739	3.3877	0.0013983	3.769	0.0015557	412.7668518827716	41.604	1.2542	41.472	40.861	42.115	-0.132	0.013315	-0.00025113	NaN	12.207	53	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161120	+		58062	26332	40673	40736							0.09792178253815109
PIPKVGLT	8	Unmodified	_PIPKVGLT_					0	0	0			REV__ENSG00000169208|ENST00000641040|OR10G3	REV__ENSG00000169208|ENST00000641040|OR10G3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	412.765646	823.516739	0.28393	0.0001172	3.6095	0.0014899	3.8934	0.0016071	412.7669877391561	41.47	1.9714	41.493	40.349	42.32	0.023006	0.034349	-6.8071E-05	NaN	12.207	81	56	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189020	+		58063	26332	40673	40736							0.09792178253815109
PIPLALVQYTT	11	Unmodified	_PIPLALVQYTT_					0	0	0			REV__nc|ENSG00000176871|Q9NYS7-3|WSB2	REV__nc|ENSG00000176871|Q9NYS7-3|WSB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	608.8224487304688	2	608.352814	1214.69108	-0.94759	-0.00057647	-1.7126	-0.0010419	-2.6602	-0.0016183	608.3517695680202	46.266	0.55114	46.063	45.855	46.406	-0.20226					19	14	2	0	0	0	0.024732	1	4434	4434		25.574	0	1	279750	+		58064	27051	40674	40737	63503	63503					0.0923171388847095
PIPSLLPK	8	Unmodified	_PIPSLLPK_					0	0	0			REV__ENSG00000184661|ENST00000330560|CDCA2	REV__ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.5839538574219	2	432.781296	863.54804	0.29391	0.0001272	2.6265	0.0011367	2.9204	0.0012639	432.78242392157404	47.099	0.57269	46.83	46.628	47.201	-0.26939					22	15	2	0	0	0	0.027866	1	4612	4612		12.207	3.9756	1	61688	+		58065	27691	40675	40738	63504	63504					0.11080751287897783
PIQHNYKGHKT	11	Unmodified	_PIQHNYKGHKT_					0	0	0			REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.3000793457031	3	441.570316	1321.68912	1.3009	0.00057442	-3.1733	-0.0014012	-1.8724	-0.0008268	441.56929928183496	36.139	0.46396	35.941	35.708	36.172	-0.19829					15	12	2	0	0	0	0.024789	1	2761	2761		26.75	18.342	1	135530	+		58066	29747	40676	40739	63505	63505					0.04114097923229565
PIQHNYKGHKT	11	Unmodified	_PIQHNYKGHKT_					0	0	0			REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	441.570316	1321.68912	-0.63357	-0.00027977	-0.47244	-0.00020861	-1.106	-0.00048838	441.5705464092154	36.347	0.3231	36.142	35.919	36.242	-0.20518	0.10033	0.0019586	NaN	15.921	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62358	+		58067	29747	40676	40739							0.04114097923229565
PIQIQSQNP	9	Unmodified	_PIQIQSQNP_					0	0	0			REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7742309570312	2	512.774731	1023.53491	-0.19125	-9.8066E-05	0.072881	3.7372E-05	-0.11836	-6.0694E-05	512.7746254421378	45.581	0.66623	45.482	45.255	45.921	-0.098873					42	18	4	0	0	0	0.12602	2	4334	4334;4346		104.75	40.539	1	2546500	+		58068	32369	40677	40740	63506;63507	63506					0.02408268437852712
PIQIQSQNP	9	Unmodified	_PIQIQSQNP_					0	0	0			REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7744750976562	2	512.774731	1023.53491	-0.20895	-0.00010714	0.19949	0.00010229	-0.0094629	-4.8524E-06	512.7746344933465	45.733	0.60512	45.472	45.249	45.854	-0.26118					40	16	4	0	0	0	0.15029	2	4355	4344;4355		99.375	36.474	1	2381200	+		58069	32369	40677	40740	63508;63509	63509					0.02408268437852712
PIQIQSQNP	9	Unmodified	_PIQIQSQNP_					0	0	0			REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.774169921875	2	512.774731	1023.53491	-0.72654	-0.00037255	0.7074	0.00036274	-0.019148	-9.8185E-06	512.7749057220951	45.674	0.70389	45.472	45.226	45.93	-0.20226					38	19	3	0	0	0	0.12602	2	4332	4332;4344		104.75	25.034	1	2586000	+		58070	32369	40677	40740	63510;63511	63510					0.02408268437852712
PIQIVLLTY	9	Unmodified	_PIQIVLLTY_					0	0	0			REV__ENST00000326361.7_2_3:179046085-179047420:+|nuORF	REV__ENST00000326361.7_2_3:179046085-179047420:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3195190429688	2	530.326068	1058.63758	-0.76302	-0.00040465	0.31111	0.00016499	-0.45192	-0.00023966	530.3260753057679	93.521	0.54357	93.516	93.242	93.786	-0.0042038					22	12	2	0	0	0	0.024323	1	11860	11860		44.117	19.914	1	246800	+		58071	30403	40678	40741	63512	63512					0.11060961176622186
PIQPPLPKIGY	11	Unmodified	_PIQPPLPKIGY_					0	0	0			REV__ENSG00000144810|ENST00000652472|COL8A1	REV__ENSG00000144810|ENST00000652472|COL8A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1864013671875	3	408.244658	1221.71214	-0.25202	-0.00010289	-1.9977	-0.00081556	-2.2497	-0.00091844	408.57815928877153	27.642	1.1937	27.485	26.802	27.995	-0.15664					70	28	4	0	0	0	0.024731	1	1428	1428		24.232	11.42	1	485850	+		58072	24363	40679	40742	63513	63513					0.11015723987975434
PIQPPLPKIGY	11	Unmodified	_PIQPPLPKIGY_					0	0	0			REV__ENSG00000144810|ENST00000652472|COL8A1	REV__ENSG00000144810|ENST00000652472|COL8A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	408.244658	1221.71214	-0.24309	-9.9242E-05	-1.9299	-0.00078788	-2.173	-0.00088712	408.24370754081576	27.528	1.2099	27.36	26.638	27.847	-0.16816	-0.056764	0.00020526	NaN	24.232	63	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515240	+		58073	24363	40679	40742							0.11015723987975434
PIREKEAPR	9	Unmodified	_PIREKEAPR_					0	0	0			REV__ENST00000583651.1_1_18:70210279-70210456:-|nuORF	REV__ENST00000583651.1_1_18:70210279-70210456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3353881835938	2	548.317097	1094.61964	-1.0238	-0.00056138	2.0552	0.0011269	1.0313	0.00056549	548.3181545224152	43.366	0.7603	43.227	42.885	43.645	-0.13929					56	20	4	0	0	0	0.023635	1	4091	4091		56.721	0	1	2528000	+		58074	35553	40680	40743	63514	63514					0.07611638974458401
PIRHPPKP	8	Unmodified	_PIRHPPKP_					0	0	0			REV__ENST00000599111.5_1_19:48609801-48613858:-|nuORF	REV__ENST00000599111.5_1_19:48609801-48613858:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.748046875	2	471.287611	940.56067	0.016532	7.7915E-06	-1.2906	-0.00060825	-1.2741	-0.00060046	471.2866919615388	45.54	0.99079	45.44	45.084	46.075	-0.099445					77	27	4	0	0	0	0.027866	1	4302	4302		19.36	0	1	1395900	+		58075	35826	40681	40744	63515	63515					0.08801207470799
PIRIKAVH	8	Unmodified	_PIRIKAVH_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL;ENST00000461134.1_1_20:43115184-43118179:+|nuORF	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.3002624511719	2	467.303262	932.59197	-1.5174	-0.0007091	-4.1477	-0.0019382	-5.6651	-0.0026473	467.30122631446864	92.271	1.4717	92.128	91.791	93.262	-0.14356					74	34	4	0	0	0	1.0574	3	11321	11321;11349;11363		20.482	0	1	1437400			58076	4010	40682	40745	63516;63517;63518	63516					0.12297780504889033
PIRKKLKIIPE	11	Unmodified	_PIRKKLKIIPE_					0	0	0		ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	ENSG00000121064|ENST00000262288|SCPEP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.6361999511719	3	445.634257	1333.88094	0.21537	9.5974E-05	3.7138	0.001655	3.9291	0.001751	445.6358142382711	40.084	1.9182	40.084	39.733	41.652	0					203	53	5	0	0	0	1.1107	1	3538	3538		8.4073	2.0864	1	6583600			58077	3853	40683	40746	63519	63519					0.22735625621476174
PIRMSLTTT	9	Unmodified	_PIRMSLTTT_					0	0	0			REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.3158874511719	2	510.281334	1018.54812	-0.31823	-0.00016238	-2.8876	-0.0014735	-3.2058	-0.0016359	510.2798106146822	40.249	0.5248	40.024	39.734	40.259	-0.225					17	13	2	0	0	0	0.024511	1	3493	3493		32.812	14.488	1	151000	+		58078	34546	40684	40747	63520	63520					0.0395838322557438
PIRMSLTTT	9	Unmodified	_PIRMSLTTT_					0	0	0			REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.281334	1018.54812	-0.79551	-0.00040593	-2.5481	-0.0013003	-3.3436	-0.0017062	510.2800996614723	40.14	0.38644	39.91	39.697	40.083	-0.23021	-0.057165	0.00015424	NaN	25.574	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93926	+		58079	34546	40684	40747							0.0395838322557438
PIRNWSSTI	9	Unmodified	_PIRNWSSTI_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.305419921875	2	537.290548	1072.56654	0.12559	6.7481E-05	-2.4489	-0.0013158	-2.3233	-0.0012483	537.2884289125391	69.755	0.75391	69.462	69.166	69.92	-0.29292					26	18	3	0	0	0	0.024523	1	8331	8331		21.96	0	1	195360	+		58080	19076	40685	40748	63521	63521					0.033162611917987306
PIRPVNIP	8	Unmodified	_PIRPVNIP_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.7556457519531	2	453.281995	904.549437	-0.12921	-5.8567E-05	0.13372	6.0614E-05	0.0045156	2.0468E-06	453.2818759549308	48.432	0.71811	48.499	48.117	48.835	0.066795					41	19	3	0	0	0	0.027866	1	4866	4866		35.201	8.4046	1	463110			58081	10013	40686	40749	63522	63522					0.0933438537664415
PIRPVRLRRRT	11	Unmodified	_PIRPVRLRRRT_					0	0	0			REV__ENST00000374057.3_1_9:117267080-117267632:-|nuORF	REV__ENST00000374057.3_1_9:117267080-117267632:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7635803222656	3	473.975899	1418.90587	0.53778	0.00025489	-2.3206	-0.0010999	-1.7828	-0.00084501	474.3092107754051	23.086	0.1865	22.884	22.733	22.92	-0.20193					5	3	2	0	0	0	0.024801	1	881	881		23.378	14.579	1	11274	+		58082	31286	40687	40750	63523	63523					0.21317118267415935
PIRRLKKK	8	Unmodified	_PIRRLKKK_					0	0	0			REV__ENST00000586358.5_1_19:1207098-1220516:+|nuORF	REV__ENST00000586358.5_1_19:1207098-1220516:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8206176757812	2	519.86656	1037.71857	0.053134	2.7623E-05	-0.35758	-0.0001859	-0.30445	-0.00015827	519.8662624407679	80.699	0.32455	80.553	80.368	80.692	-0.146					11	7	2	0	0	0	0.027866	1	9684	9684		4.3163	0	1	275650	+		58083	22384	40688	40751	63524	63524					0.2012170673001492
PIRTRVIF	8	Unmodified	_PIRTRVIF_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2928466796875	2	501.316369	1000.61818	-0.20463	-0.00010259	-4.2617	-0.0021365	-4.4663	-0.002239	501.31380898913244	45.744	0.38188	45.482	45.284	45.666	-0.26118					13	10	2	0	0	0	0.027866	1	4319	4319		68.485	0	1	77697	+		58084	24332	40689	40752	63525	63525					0.11790049676369563
PIRWMYLN	8	Unmodified	_PIRWMYLN_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5;REV__ENST00000553293.5_1_14:69522275-69583201:-|nuORF	REV__ENST00000553293.5_1_14:69522275-69583201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7680053710938	2	546.786587	1091.55862	-0.8941	-0.00048888	-3.3289	-0.0018202	-4.223	-0.0023091	546.784580579801	38.379	0.58026	38.158	37.959	38.539	-0.22148					27	15	2	0	0	0	0.027866	1	3192	3192		26.796	15.285	1	638450	+		58085	23981;34970	40690	40753	63526	63526					0.01650410670686142
PISKAPLPL	9	Unmodified	_PISKAPLPL_					0	0	0		ENST00000262059.8_1_12:54104964-54105024:-|nuORF	ENST00000262059.8_1_12:54104964-54105024:-|nuORF	ENST00000262059.8_1_12:54104964-54105024:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.2264099121094	2	468.299853	934.585153	0.14783	6.9227E-05	0.15984	7.4853E-05	0.30767	0.00014408	468.2997953281668	49.761	0.59485	49.58	49.383	49.978	-0.18071					25	15	2	0	0	0	0.024539	1	4985	4985		27.882	0	1	225490			58086	11486	40691	40754	63527	63527					0.11524422833656445
PISKLSQSNVL	11	Unmodified	_PISKLSQSNVL_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	592.868408203125	2	593.34552	1184.67649	-1.6598	-0.00098481	-0.32762	-0.00019439	-1.9874	-0.0011792	593.3451145215248	102.28	0.57625	102.28	101.99	102.57	0					22	12	2	0	0	0	0.024753	1	13136	13136		38.754	7.2238	1	238480	+		58087	26571	40692	40755	63528	63528					0.09153641740317653
PISKLSQSNVL	11	Unmodified	_PISKLSQSNVL_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	593.34552	1184.67649	-0.16629	-9.867E-05	-1.8748	-0.0011124	-2.0411	-0.0012111	593.3442675537249	102.37	0.55202	102.24	102.03	102.58	-0.12931	-0.036963	-0.00035283	NaN	38.754	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223810	+		58088	26571	40692	40755							0.09153641740317653
PISKLSQSNVL	11	Unmodified	_PISKLSQSNVL_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	593.34552	1184.67649	-0.64462	-0.00038248	-1.211	-0.00071853	-1.8556	-0.001101	593.3447299569305	102.38	0.6351	102.25	102	102.63	-0.12666	-0.027507	0.00043491	NaN	38.754	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189480	+		58089	26571	40692	40755							0.09153641740317653
PISKLSQSNVL	11	Unmodified	_PISKLSQSNVL_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	593.34552	1184.67649	-0.26085	-0.00015477	-1.569	-0.00093098	-1.8299	-0.0010858	593.3444797147789	102.48	0.46074	102.31	102.09	102.55	-0.17178	0.026817	1.0016E-05	NaN	38.754	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231940	+		58090	26571	40692	40755							0.09153641740317653
PISKVRHVQEW	11	Unmodified	_PISKVRHVQEW_					0	0	0		ACYP1|p.M62V|1|0.27|ENSG00000119640|chr14:75053560-75053560|T/C|missense_variant	ACYP1|p.M62V|1|0.27|ENSG00000119640|chr14:75053560-75053560|T/C|missense_variant	ACYP1|p.M62V|1|0.27|ENSG00000119640|chr14:75053560-75053560|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.26861572265625	3	460.257849	1377.75172	-0.17385	-8.0016E-05	2.8629	0.0013177	2.6891	0.0012377	460.2589446332413	39.819	0.6555	39.589	39.391	40.046	-0.23021					30	16	3	0	0	0	0.02477	1	3435	3435		22.562	0	1	170440			58091	22	40693	40756	63529	63529					0.07795243991404277
PISNEIKCPPP	11	Unmodified	_PISNEIKCPPP_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8147583007812	2	597.812999	1193.61144	-0.45243	-0.00027047	3.717	0.0022221	3.2646	0.0019516	597.8150606259894	109.54	0.36329	109.41	109.26	109.63	-0.12453					30	16	3	0	0	0	0.90725	2	13498	13491;13498		51.193	6.8155	1	1075100	+		58092	22318	40694	40757	63530;63531	63531					0.022383239428108936
PISNEIKCPPP	11	Unmodified	_PISNEIKCPPP_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	597.812999	1193.61144	-0.45243	-0.00027047	3.717	0.0022221	3.2646	0.0019516	597.8150606259894	109.54	0.36329	109.41	109.26	109.63	-0.12453	-0.012297	0.00022212	NaN	51.193	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1075100	+		58093	22318	40694	40757							0.022383239428108936
PISNEIKCPPP	11	Unmodified	_PISNEIKCPPP_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	597.812999	1193.61144	-1.8141	-0.0010845	4.5865	0.0027419	2.7724	0.0016574	597.8157289401387	109.59	0.27502	109.45	109.31	109.59	-0.13821	0.024419	0.0012618	NaN	51.193	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562790	+		58094	22318	40694	40757							0.022383239428108936
PISNEIKCPPP	11	Unmodified	_PISNEIKCPPP_					0	0	0			REV__ENSG00000117000|ENST00000372771|RLF	REV__ENSG00000117000|ENST00000372771|RLF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	597.812999	1193.61144	0.32522	0.00019442	2.3149	0.0013839	2.6401	0.0015783	597.8143291237009	109.56	0.31523	109.41	109.31	109.63	-0.14889	-0.012122	-0.0014543	NaN	51.193	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519490	+		58095	22318	40694	40757							0.022383239428108936
PISPPITT	8	Unmodified	_PISPPITT_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2375183105469	2	413.239461	824.46437	-0.49111	-0.00020295	-2.0103	-0.00083072	-2.5014	-0.0010337	413.2385346560077	89.906	0.95889	89.778	89.37	90.329	-0.12775					56	22	4	0	0	0	1.0239	1	11016	11016		33.516	5.2613	1	1257600	+		58096	27387	40695	40758	63532	63532					0.04511595120175116
PISPPITT	8	Unmodified	_PISPPITT_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.23760986328125	2	413.239461	824.46437	0.41687	0.00017227	-3.1274	-0.0012924	-2.7106	-0.0011201	413.23806078557476	89.91	1.0488	89.771	89.401	90.45	-0.13824					53	24	4	0	0	0	1.0338	1	10976	10976		31.955	0	1	1055600	+		58097	27387	40695	40758	63533	63533					0.04511595120175116
PISQRRCAL	9	Unmodified	_PISQRRCAL_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2632446289062	2	522.292568	1042.57058	-1.2493	-0.0006525	0.27968	0.00014607	-0.96962	-0.00050643	522.2925285608405	53.741	0.51037	53.605	53.357	53.867	-0.13617					20	12	2	0	0	0	0.024506	1	5696	5696		23.042	0	1	422380	+		58098	24345	40696	40759	63534	63534					0.05100027413868702
PISQRRCAL	9	Unmodified	_PISQRRCAL_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.292568	1042.57058	0.046167	2.4113E-05	-0.96476	-0.00050389	-0.9186	-0.00047978	522.2920043719502	53.883	0.3721	53.638	53.49	53.862	-0.2453	-0.0075073	-0.00038493	NaN	10.866	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307660	+		58099	24345	40696	40759							0.05100027413868702
PISSANKSLG	10	Unmodified	_PISSANKSLG_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2762451171875	2	487.269281	972.52401	2.0828	0.0010149	-1.6941	-0.00082546	0.38873	0.00018941	487.26845563551643	19.252	0.19813	19.019	18.928	19.126	-0.23345					5	3	2	0	0	0	0.03519	1	373	373		31.53	3.2755	1	9044.4	+		58100	23500	40697	40760	63535	63535					0.03664866063559202
PISWKKII	8	Unmodified	_PISWKKII_					0	0	0			REV__ENST00000527591.5_1_14:61453838-61514994:+|nuORF	REV__ENST00000527591.5_1_14:61453838-61514994:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.201416015625	2	492.81567	983.616788	-0.022643	-1.1159E-05	-3.4932	-0.0017215	-3.5158	-0.0017327	492.81352146123487	42.008	0.75706	41.778	41.274	42.031	-0.23029					35	20	3	0	0	0	0.027866	1	3772	3772		35.201	0	1	513160	+		58101	23978	40698	40761	63536	63536					0.12432415587613832
PITEPLLDKLI	11	Unmodified	_PITEPLLDKLI_					0	0	0			REV__nc|ENSG00000096717|Q96EB6-2|SIRT1	REV__nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.92230224609375	3	417.923473	1250.74859	-0.52093	-0.00021771	-2.5577	-0.0010689	-3.0786	-0.0012866	417.92234284663687	104.49	1.049	104.36	104.02	105.07	-0.12927					86	34	4	0	0	0	1.0327	1	13021	13021		29.551	7.7703	1	1360400	+		58102	20988	40699	40762	63537	63537					0.13324556094039508
PITTAPPQ	8	Unmodified	_PITTAPPQ_					0	0	0			REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2691650390625	2	412.729261	823.443968	-0.63281	-0.00026118	-2.3465	-0.00096846	-2.9793	-0.0012296	412.7295861475299	28.308	0.2469	28.139	28.007	28.254	-0.16897					8	5	2	0	0	0	0.027866	1	1653	1653		24.203	0	1	19768	+		58103	21108	40700	40763	63538	63538					0.02518424460379265
PITTGYTDGI	10	Unmodified	_PITTGYTDGI_					0	0	0		nc|ENSG00000116161|Q9HB71-2|CACYBP	nc|ENSG00000116161|Q9HB71-2|CACYBP	nc|ENSG00000116161|Q9HB71-2|CACYBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.2605590820312	2	519.261122	1036.50769	-0.86621	-0.00044979	1.3595	0.00070596	0.49333	0.00025617	519.2616594711949	57.524	1.5796	57.619	57.243	58.823	0.095306					89	42	3	0	0	0	0.65054	1	6426	6426		71.296	11.177	1	6058600			58104	18194	40701	40764	63539	63539					-0.00910259893203147
PITVYIKDE	9	Unmodified	_PITVYIKDE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2901000976562	2	539.294965	1076.57538	-1.2528	-0.00067564	-4.4586	-0.0024045	-5.7114	-0.0030801	539.2923822478774	53.432	0.95505	53.285	52.72	53.675	-0.14724					39	25	2	0	0	0	0.024506	1	5749	5749		30.504	5.0535	1	235040	+		58105	25017	40702	40765	63540	63540					0.040151900376031335
PIVAGDIRVY	10	Unmodified	_PIVAGDIRVY_					0	0	0			REV__nc|ENSG00000105486|P18858-3|LIG1	REV__nc|ENSG00000105486|P18858-3|LIG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.7472534179688	2	551.816399	1101.61824	-0.56278	-0.00031055	2.9403	0.0016225	2.3775	0.001312	551.8176612141451	39.338	0.61213	39.115	38.891	39.503	-0.22311					26	15	3	0	0	0	0.03519	1	3371	3371		27.882	6.9353	1	283350	+		58106	21530	40703	40766	63541	63541					0.07150004885716044
PIVDNKFW	8	Unmodified	_PIVDNKFW_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7644958496094	2	509.77146	1017.52837	-0.60286	-0.00030732	1.5958	0.00081347	0.99289	0.00050615	509.77147813287155	25.997	0.47026	25.973	25.693	26.164	-0.023088					20	10	3	0	0	0	0.027866	1	1249	1249		40.573	8.6178	1	194580	+		58107	27671	40704	40767	63542	63542					0.020303752771383188
PIVFAPRPAA	10	Unmodified	_PIVFAPRPAA_					0	0	0			REV__ENST00000488620.5_1_9:116327559-116353744:+|nuORF	REV__ENST00000488620.5_1_9:116327559-116353744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2737426757812	2	519.808377	1037.6022	-1.2278	-0.0006382	-3.7679	-0.0019586	-4.9956	-0.0025968	519.8062754947441	37.925	1.114	37.954	37.186	38.3	0.02985					67	30	3	0	0	0	0.03519	1	3134	3134		35.618	3.6634	1	854310	+		58108	23911	40705	40768	63543	63543					0.0849034343943913
PIVLDGVSDPK	11	Unmodified	_PIVLDGVSDPK_					0	0	0			REV__nc|ENSG00000143248|O15539-3|RGS5	REV__nc|ENSG00000143248|O15539-3|RGS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2356567382812	2	570.318971	1138.62339	-0.54182	-0.00030901	3.8897	0.0022183	3.3478	0.0019093	570.321029883849	69.6	0.49944	69.333	69.079	69.578	-0.26725					23	11	3	0	0	0	0.024787	1	8062	8062		58.23	22.612	1	310460	+		58109	24216	40706	40769	63544	63544					0.059622639576673464
PIVLLAVARA	10	Unmodified	_PIVLLAVARA_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2879943847656	2	511.839677	1021.6648	0.214	0.00010953	-0.20185	-0.00010331	0.012151	6.2192E-06	511.83950721303455	71.994	0.91426	72.004	71.615	72.529	0.0097733					77	23	5	0	0	0	0.03519	1	8625	8625		7.1934	0	1	5668700	+		58110	23141	40707	40770	63545	63545					0.15483489507641934
PIVRIAAH	8	Unmodified	_PIVRIAAH_					0	0	0		ENSG00000143199|ENST00000367851|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	ENSG00000143199|ENST00000367851|ADCY10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.8538513183594	2	438.774337	875.534121	-1.1869	-0.00052076	0.7268	0.0003189	-0.46005	-0.00020186	438.7747602329732	38.54	0.40385	38.361	38.136	38.539	-0.17929					13	10	2	0	0	0	0.027866	1	3222	3222		10.185	0	1	98817			58111	5620	40708	40771	63546	63546					0.09137518579461812
PIVRRWAP	8	Unmodified	_PIVRRWAP_					0	0	0		nc|ENSG00000105219|Q9H8S5-2|CCNP;ENSG00000105219|ENST00000430325|CCNP	nc|ENSG00000105219|Q9H8S5-2|CCNP	nc|ENSG00000105219|Q9H8S5-2|CCNP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2505187988281	2	497.800886	993.587219	-0.6566	-0.00032686	-0.44517	-0.00022161	-1.1018	-0.00054847	497.79931105824926	25.24	0.42972	25.013	24.842	25.271	-0.22683					13	9	2	0	0	0	0.027866	1	1202	1202		14.664	0	1	36447			58112	2645	40709	40772	63547	63547					0.09016896362118132
PIWSRNWLND	10	Unmodified	_PIWSRNWLND_					0	0	0			REV__ENST00000375245.8_1_10:32096493-32096589:-|nuORF	REV__ENST00000375245.8_1_10:32096493-32096589:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.27392578125	3	434.219283	1299.63602	-0.25526	-0.00011084	0.060275	2.6173E-05	-0.19499	-8.4668E-05	434.21926918855223	54.528	0.3963	54.382	54.173	54.57	-0.14609					19	10	2	0	0	0	0.03519	1	5809	5809		43.651	16.603	1	127450	+		58113	31324	40710	40773	63548	63548					-0.0018127985943010572
PIWTKAKKP	9	Unmodified	_PIWTKAKKP_					0	0	0			REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7863159179688	2	534.831852	1067.64915	-1.3539	-0.00072411	-2.1642	-0.0011575	-3.5181	-0.0018816	534.83039310068	55.702	0.33092	55.8	55.634	55.965	0.098015					13	8	2	0	0	0	0.024457	1	6104	6104		21.96	7.095	1	117860	+		58114	20860	40711	40774	63549	63549					0.11803202990608952
PIWWPEDI	8	Unmodified	_PIWWPEDI_					0	0	0		NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1;nc|ENSG00000106459|Q16656-3|NRF1	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2918090820312	2	528.263468	1054.51238	0.69309	0.00036613	1.1696	0.00061785	1.8627	0.00098399	528.2631318083228	54.375	0.55067	54.473	54.294	54.845	0.098015					22	15	2	0	0	0	0.027866	1	5902	5902		44.531	0	1	205340			58115	2790	40712	40775	63550	63550					-0.012693309597580082
PIYFLGLL	8	Unmodified	_PIYFLGLL_					0	0	0			REV__ENSG00000036828|ENST00000639785|CASR	REV__ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30535888671875	2	468.283672	934.552791	-0.063993	-2.9967E-05	0.83542	0.00039121	0.77143	0.00036125	468.28516552833725	53.276	0.7519	53.276	52.974	53.726	0					30	20	2	0	0	0	0.027866	1	5739	5739		33.493	0	1	121320	+		58116	20067	40713	40776	63551	63551					0.08289635430662656
PIYKQIDI	8	Unmodified	_PIYKQIDI_					0	0	0			REV__ENSG00000163322|ENST00000321945|ABRAXAS1	REV__ENSG00000163322|ENST00000321945|ABRAXAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2879638671875	2	495.286943	988.559333	0.58553	0.00029	-1.0783	-0.00053409	-0.49281	-0.00024408	495.28632182419534	51.385	1.676	51.273	50.379	52.055	-0.11163					117	44	4	0	0	0	0.27193	3	5246	5246;5266;5304		123.99	10.577	1	7741800	+		58117	25553	40714	40777	63552;63553;63554	63552					0.0645952859136969
PIYLRLGW	8	Unmodified	_PIYLRLGW_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2916259765625	2	509.297645	1016.58074	-0.28872	-0.00014704	-3.3368	-0.0016994	-3.6255	-0.0018465	509.2958391922131	58.816	0.62909	58.628	58.349	58.979	-0.18795					26	15	2	0	0	0	0.027866	1	6447	6447		20.482	5.617	1	373920	+		58118	37247	40715	40778	63555	63555					0.07310958410755575
PIYNLLMPIDA	11	Unmodified	_PIYNLLMPIDA_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	631.2763671875	2	630.338849	1258.66315	0.39052	0.00024616	2.8283	0.0017828	3.2188	0.0020289	630.340561558794	59.14	0.63979	58.898	58.661	59.301	-0.24165					32	15	3	0	0	0	0.024762	1	6531	6531		37.812	0	1	461190	+		58119	25846	40716	40779	63556	63556					0.04416067636725529
PIYNQKKHSE	10	Unmodified	_PIYNQKKHSE_					0	0	0			REV__ENSG00000095951|ENST00000379388|HIVEP1	REV__ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.25872802734375	3	415.219172	1242.63569	-0.75143	-0.00031201	4.3206	0.001794	3.5691	0.001482	415.55378726293327	38.835	0.19497	38.613	38.458	38.653	-0.22216					6	4	2	0	0	0	0.03519	1	3214	3214		25.126	4.0938	1	52380	+		58120	20979	40717	40780	63557	63557					0.024073004207139093
PIYVPVPN	8	Unmodified	_PIYVPVPN_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.26214599609375	2	449.755278	897.496004	0.10866	4.8872E-05	-3.9157	-0.0017611	-3.807	-0.0017122	449.75350908358797	41.479	0.34815	41.502	41.358	41.706	0.023006					12	9	2	0	0	0	0.027866	1	3661	3661		37.028	1.8278	1	193160	+		58121	20529	40718	40781	63558	63558					0.04315587874134508
PKAGKFGPAR	10	Unmodified	_PKAGKFGPAR_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8162841796875	2	514.803626	1027.5927	0.1708	8.7927E-05	-0.81949	-0.00042188	-0.64869	-0.00033395	514.8030771131483	72.192	0.22678	72.202	72.023	72.25	0.0097733					9	5	2	0	0	0	0.03519	1	8708	8708		27.882	3.6795	1	196930			58122	7278	40719	40782	63559	63559					0.08000575153937461
PKAPKRAIA	9	Unmodified	_PKAPKRAIA_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.237548828125	2	476.308544	950.602535	-0.24384	-0.00011615	0.13328	6.3481E-05	-0.11057	-5.2664E-05	476.30846327236003	32.651	0.78022	32.493	31.948	32.728	-0.15772					34	18	3	0	0	0	0.024541	1	2221	2221		12.207	7.8906	1	252450	+		58123	27788	40720	40783	63560	63560					0.12525763159317194
PKAPKRAIA	9	Unmodified	_PKAPKRAIA_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.308544	950.602535	0.28945	0.00013787	-0.83402	-0.00039725	-0.54456	-0.00025938	476.3079180494318	32.785	0.52277	32.785	32.418	32.941	0	0.23469	-0.00058972	NaN	12.207	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96972	+		58124	27788	40720	40783							0.12525763159317194
PKAPKRAIA	9	Unmodified	_PKAPKRAIA_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.308544	950.602535	-0.11989	-5.7105E-05	-0.14955	-7.1234E-05	-0.26944	-0.00012834	476.3084096134365	32.611	0.44279	32.623	32.338	32.781	0.011799	0.0723	6.2311E-05	NaN	12.207	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70584	+		58125	27788	40720	40783							0.12525763159317194
PKAPKRAIA	9	Unmodified	_PKAPKRAIA_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.308544	950.602535	0.050118	2.3872E-05	-0.14747	-7.0241E-05	-0.097351	-4.6369E-05	476.3083694069913	32.443	0.49001	32.506	32.2	32.69	0.062885	-0.04417	6.4297E-05	NaN	12.207	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90104	+		58126	27788	40720	40783							0.12525763159317194
PKAPKRAIA	9	Unmodified	_PKAPKRAIA_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.308544	950.602535	0.22491	0.00010713	-0.34479	-0.00016423	-0.11988	-5.7101E-05	476.3082473080026	32.631	0.75441	32.394	31.867	32.622	-0.23666	-0.15597	-0.00012368	NaN	12.207	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137390	+		58127	27788	40720	40783							0.12525763159317194
PKAPLTVKT	9	Unmodified	_PKAPLTVKT_					0	0	0			REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.3019714355469	2	477.80276	953.590967	-1.0244	-0.00048946	1.3307	0.00063583	0.30635	0.00014637	477.8030135328487	33.586	0.90438	33.42	33.117	34.021	-0.16565					58	22	5	0	0	0	0.96906	1	2376	2376		26.693	1.2427	1	2197700	+		58128	21989	40721	40784	63561	63561					0.11231521345303008
PKAQELEV	8	Unmodified	_PKAQELEV_					0	0	0		ENST00000444428.5_3_7:1040118-1094922:-|nuORF;ENST00000412051.5_2_7:1040118-1067924:-|nuORF	ENST00000444428.5_3_7:1040118-1094922:-|nuORF	ENST00000444428.5_3_7:1040118-1094922:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2894287109375	2	457.2531	912.491647	-0.2489	-0.00011381	-1.3277	-0.0006071	-1.5766	-0.00072091	457.25359945427067	93.813	0.28407	93.819	93.646	93.93	0.0059814					9	6	2	0	0	0	0.027866	1	11831	11831		17.365	0	1	54360			58129	13812	40722	40785	63562	63562					0.031900786605774556
PKAQLMLRY	9	Unmodified	_PKAQLMLRY_					0	0	0		UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant;ENSG00000163960|ENST00000296328|UBXN7	UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.2982788085938	2	560.320794	1118.62703	-0.77146	-0.00043226	-1.4591	-0.00081755	-2.2305	-0.0012498	560.8210036585522	38.427	0.16698	38.205	38.054	38.221	-0.22149					6	4	2	0	0	0	0.024506	1	3151	3151		30.504	8.5438	1	63405			58130	7182	40723	40786	63563	63563					0.07246655250514777
PKARKAGKP	9	Unmodified	_PKARKAGKP_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7724914550781	2	476.806168	951.597784	-0.046854	-2.234E-05	0.27199	0.00012969	0.22514	0.00010735	476.8061689975163	35.753	0.53185	35.753	35.531	36.063	0					28	13	3	0	0	0	0.024487	1	2802	2802		24.203	0	1	359360	+		58131	24424	40724	40787	63564	63564					0.12004879016558334
PKATVTKAKI	10	Unmodified	_PKATVTKAKI_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|62|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|62|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|62|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8104248046875	2	528.842416	1055.67028	-0.24505	-0.00012959	-0.56546	-0.00029904	-0.81051	-0.00042863	528.8419836583042	64.074	0.72488	63.822	63.553	64.278	-0.25141					43	19	3	0	0	0	0.03519	1	7490	7490		53.089	27.515	1	963160			58132	17869	40725	40788	63565	63565					0.14467168299438526
PKAVAFIH	8	Unmodified	_PKAVAFIH_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7875671386719	2	441.763438	881.512323	-0.16249	-7.1784E-05	3.2231	0.0014239	3.0606	0.0013521	441.76330895076563	40.821	0.7626	40.844	40.527	41.29	0.023006					39	21	3	0	0	0	0.027866	1	3581	3581		8.8223	4.1406	1	438140			58133	2095	40726	40789	63566	63566					0.06682713830889497
PKAVVGLSS	9	Unmodified	_PKAVVGLSS_					0	0	0			REV__nc|ENSG00000135424|Q13683-9|ITGA7	REV__nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.26898193359375	2	429.258185	856.501818	-0.13174	-5.655E-05	0.80508	0.00034559	0.67335	0.00028904	429.2584273909164	40.738	0.7334	40.761	40.237	40.97	0.023003					43	20	3	0	0	0	0.024477	1	3583	3583		35.618	14.671	1	666870	+		58134	23542	40727	40790	63567	63567					0.0678268638581585
PKEADPDPVY	10	Unmodified	_PKEADPDPVY_					0	0	0			REV__nc|ENSG00000127022|P27824-3|CANX	REV__nc|ENSG00000127022|P27824-3|CANX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.7705688476562	2	565.771854	1129.52915	-0.88118	-0.00049854	0.34952	0.00019775	-0.53166	-0.0003008	565.7718282714278	44.491	0.90779	44.387	44.099	45.007	-0.10468					76	23	5	0	0	0	0.62431	1	4163	4163		74.255	5.4682	1	4156200	+		58135	22915	40728	40791	63568	63568					-0.03042874864490841
PKEDNVDL	8	Unmodified	_PKEDNVDL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.232364	928.450176	-0.29401	-0.00013678	-4.1959	-0.0019521	-4.4899	-0.0020889	465.2304313396578	75.6	0.32732	75.355	75.116	75.443	-0.24455					13	8	2	0	0	0	0.027866	1	9209	9209		26.693	2.4902	1	170540	+		58136	28136	40729	40792	63569	63569					-0.016911020987663505
PKEERELPR	9	Unmodified	_PKEERELPR_					0	0	0		ARHGAP28|p.T196P|1|0.46|ENSG00000088756|chr18:6851076-6851076|A/C|missense_variant	ARHGAP28|p.T196P|1|0.46|ENSG00000088756|chr18:6851076-6851076|A/C|missense_variant	ARHGAP28|p.T196P|1|0.46|ENSG00000088756|chr18:6851076-6851076|A/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.353515625	2	577.319837	1152.62512	-0.51984	-0.00030011	0.82965	0.00047897	0.30982	0.00017886	577.3209008686476	45.063	0.7901	45.107	44.722	45.512	0.04388					50	22	3	0	0	0	0.024466	1	4230	4230		39.253	13.803	1	319200			58137	122	40730	40793	63570	63570					0.054913177662683665
PKEERQEGGV	10	Unmodified	_PKEERQEGGV_					0	0	0			REV__ENSG00000170191|ENST00000304788|NANP	REV__ENSG00000170191|ENST00000304788|NANP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.8218383789062	2	564.785827	1127.5571	-0.049179	-2.7776E-05	-0.010962	-6.191E-06	-0.060141	-3.3967E-05	565.2873657837462	18.36	0.29589	18.228	18.006	18.302	-0.13147					6	5	2	0	0	0	0.03519	1	273	273		58.23	3.5076	1	16383	+		58138	26443	40731	40794	63571	63571					-0.0015755188437651668
PKEFFVDEHS	10	Unmodified	_PKEFFVDEHS_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5632019042969	3	412.196144	1233.5666	-0.24435	-0.00010072	-2.264	-0.0009332	-2.5083	-0.0010339	412.1950554072831	31.968	0.75519	31.811	31.489	32.245	-0.15772					33	17	3	0	0	0	0.03519	1	2208	2208		22.58	5.4129	1	207280			58139	18827	40732	40795	63572	63572					-0.0408378359886683
PKEGTHNREQT	11	Unmodified	_PKEGTHNREQT_					0	0	0			REV__nc|ENSG00000197054|Q0D2J5-3|ZNF763	REV__nc|ENSG00000197054|Q0D2J5-3|ZNF763	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.25885009765625	3	432.881219	1295.62183	-0.66479	-0.00028777	0.039696	1.7184E-05	-0.62509	-0.00027059	432.88082880251494	35.688	0.39331	35.688	35.417	35.81	0					26	9	4	0	0	0	0.02473	1	2779	2779		15.921	0	1	121200	+		58140	28256	40733	40796	63573	63573					-0.014159770783862768
PKEGVYELAV	10	Unmodified	_PKEGVYELAV_					0	0	0		ENSG00000165028|ENST00000374762|NIPSNAP3B;ENST00000461177.1_1_9:107526493-107533549:+|nuORF	ENSG00000165028|ENST00000374762|NIPSNAP3B	ENSG00000165028|ENST00000374762|NIPSNAP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8006591796875	2	552.800414	1103.58628	0.70933	0.00039212	-0.21417	-0.0001184	0.49515	0.00027372	552.8002230231247	19.43	0.74376	19.23	18.958	19.701	-0.2001					37	14	4	0	0	0	1.0393	1	418	418		40.778	1.5253	1	964640			58141	7357	40734	40797	63574	63574					0.03862592411906007
PKEHSYYYR	9	Unmodified	_PKEHSYYYR_					0	0	0		ENSG00000215217|ENST00000399810|CFAP90	ENSG00000215217|ENST00000399810|CFAP90	ENSG00000215217|ENST00000399810|CFAP90	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.8985290527344	3	414.86825	1241.58292	0.3217	0.00013346	-3.674	-0.0015242	-3.3523	-0.0013908	414.8666298011834	24.992	0.21827	25.07	24.914	25.132	0.078344					6	4	2	0	0	0	0.024462	1	1090	1090		30.569	1.3988	1	14163			58142	10585	40735	40798	63575	63575					-0.02820657642109836
PKEKFSSQ	8	Unmodified	_PKEKFSSQ_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MSMS	OPSCC_40_ClassI_Rep-3	6	475.7513427734375	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.486	1	20.263	19.763	20.763	-0.22344								0	0	0	0.3354	1	526	526		84.916	8.0689	1				58143	8193	40736	40799	63576	63576					0.010131945178159185
PKEKPIVKP	9	Unmodified	_PKEKPIVKP_					0	0	0		nc|ENSG00000111615|Q13601-2|KRR1;ENSG00000111615|ENST00000229214|KRR1	nc|ENSG00000111615|Q13601-2|KRR1	nc|ENSG00000111615|Q13601-2|KRR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2627563476562	2	518.331685	1034.64882	0.27066	0.00014029	-0.90207	-0.00046757	-0.63141	-0.00032728	518.331181670603	56.172	0.56789	55.956	55.668	56.236	-0.21607					24	14	2	0	0	0	0.024511	1	6071	6071		25.574	13.367	1	271690			58144	3126	40737	40800	63577	63577					0.1328778327076634
PKELNSTDI	9	Unmodified	_PKELNSTDI_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.768798828125	2	508.766571	1015.51859	-0.58322	-0.00029672	0.56099	0.00028541	-0.02223	-1.131E-05	508.7670030526547	22.684	1.752	22.684	21.771	23.523	0					104	38	4	0	0	0	0.2508	1	852	852		82.241	9.3613	1	5505800	+		58145	20134	40738	40801	63578	63578					0.011451424810957178
PKELPGMVE	9	Unmodified	_PKELPGMVE_					0	0	0			REV__ENSG00000165821|ENST00000537235|SALL2	REV__ENSG00000165821|ENST00000537235|SALL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3009033203125	2	500.26261	998.510668	-0.50319	-0.00025173	3.6412	0.0018215	3.138	0.0015698	500.2643936971251	32.203	0.728	32.215	31.902	32.63	0.011799					33	18	3	0	0	0	0.024294	1	2258	2258		37.159	0	1	616740	+		58146	25936	40739	40802	63579	63579					0.011352919599744382
PKEPPPSL	8	Unmodified	_PKEPPPSL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7449035644531	2	432.744911	863.475269	-0.56648	-0.00024514	0.41151	0.00017808	-0.15497	-6.706E-05	432.7449890016174	28.186	1.3334	27.941	27.677	29.011	-0.24524					70	31	3	0	0	0	0.38451	3	1613	1613;1624;1636		99.375	14.015	1	6116400			58147	4436	40740	40803	63580;63581;63582	63580					0.03806997494461939
PKEPPPSL	8	Unmodified	_PKEPPPSL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7452697753906	2	432.744911	863.475269	-0.50459	-0.00021836	0.81692	0.00035352	0.31232	0.00013516	432.74509073617645	29.609	0.72524	29.364	29.011	29.736	-0.24524					37	16	3	0	0	0	0.30053	2	1831	1831;1843		111.65	14.176	1	1455100			58148	4436	40740	40803	63583;63584	63583					0.03806997494461939
PKEPPPSL	8	Unmodified	_PKEPPPSL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7449951171875	2	432.744911	863.475269	-0.56169	-0.00024307	0.43168	0.00018681	-0.13001	-5.6263E-05	432.74501698584345	28.034	1.3672	27.865	27.486	28.854	-0.16897					94	32	4	0	0	0	0.38451	4	1583	1583;1594;1606;1618		99.375	19.924	1	9002500			58149	4436	40740	40803	63585;63586;63587;63588	63585					0.03806997494461939
PKEPPPSL	8	Unmodified	_PKEPPPSL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7450866699219	2	432.744911	863.475269	-0.44386	-0.00019208	0.70525	0.00030519	0.26139	0.00011311	432.74504298681137	29.488	1.0638	29.315	28.808	29.872	-0.17258					51	24	3	0	0	0	0.30053	1	1817	1817		111.65	5.2331	1	2022100			58150	4436	40740	40803	63589	63589					0.03806997494461939
PKEPPPSL	8	Unmodified	_PKEPPPSL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.74462890625	2	432.744911	863.475269	0.015833	6.8517E-06	-0.27698	-0.00011986	-0.26115	-0.00011301	432.7447479845207	28.054	1.3043	27.902	27.649	28.954	-0.15195					96	31	5	0	0	0	0.38451	3	1594	1582;1594;1606		99.375	8.5983	1	11413000			58151	4436	40740	40803	63590;63591;63592	63591					0.03806997494461939
PKEPPPSL	8	Unmodified	_PKEPPPSL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29-2|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.74493408203125	2	432.744911	863.475269	0.20737	8.9739E-05	0.053335	2.3081E-05	0.26071	0.00011282	432.74477245654685	29.478	0.79331	29.328	28.956	29.75	-0.14952					47	18	4	0	0	0	0.38451	2	1789	1776;1789		99.375	13.468	1	2160100			58152	4436	40740	40803	63593;63594	63594					0.03806997494461939
PKEQALREQ	9	Unmodified	_PKEQALREQ_					0	0	0			REV__nc|ENSG00000188732|A4D161-3|FAM221A	REV__nc|ENSG00000188732|A4D161-3|FAM221A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7999267578125	2	549.798737	1097.58292	-0.82568	-0.00045396	0.49447	0.00027186	-0.33121	-0.0001821	549.7990018273978	21.991	1.457	21.916	21.418	22.875	-0.075296					105	30	5	0	0	0	0.22902	1	755	755		85.161	2.9203	1	3066200	+		58153	28057	40741	40804	63595	63595					0.03803342357900874
PKEWQLTV	8	Unmodified	_PKEWQLTV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8212585449219	2	500.776742	999.538931	-1.1025	-0.00055213	-3.5355	-0.0017705	-4.638	-0.0023226	500.7747340326589	39.663	0.31366	39.551	39.363	39.677	-0.11223					11	8	2	0	0	0	0.027866	1	3399	3399		21.96	0	1	193390	+		58154	25017	40742	40805	63596	63596					0.03914357931557788
PKEWTSEL	8	Unmodified	_PKEWTSEL_					0	0	0			REV__ENST00000513298.5_1_5:145838810-145849312:+|nuORF	REV__ENST00000513298.5_1_5:145838810-145849312:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7882080078125	2	495.250557	988.486562	-0.86221	-0.00042701	-3.1601	-0.001565	-4.0223	-0.001992	495.24877882228395	30.322	0.57503	30.322	30.017	30.592	0					28	13	3	0	0	0	0.027866	1	1957	1957		44.117	0	1	385100	+		58155	22081	40743	40806	63597	63597					-0.00814225202043417
PKFPGEGTA	9	Unmodified	_PKFPGEGTA_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2482604980469	2	452.232168	902.449782	-0.61023	-0.00027596	0.40608	0.00018364	-0.20415	-9.2323E-05	452.2308824530875	25.462	0.20429	25.428	25.351	25.556	-0.034395					8	4	2	0	0	0	0.024535	1	1205	1205		3.41	0	1	28324			58156	4258	40744	40807	63598	63598					-0.005344770279521072
PKGAMLTH	8	Unmodified	_PKGAMLTH_					0	0	0		nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;ENSG00000164398|ENST00000651883|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.7296142578125	2	427.73128	853.448008	-0.16618	-7.108E-05	-3.7389	-0.0015992	-3.9051	-0.0016703	427.72955809338526	28.876	1.1973	28.707	28.254	29.451	-0.16897					59	27	4	0	0	0	0.81662	1	1726	1726		57.811	0	1	1499700			58157	7272	40745	40808	63599	63599					0.015421906824371945
PKGCQNCEYP	10	Unmodified	_PKGCQNCEYP_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7357177734375	2	569.736434	1137.45831	-0.31569	-0.00017986	-0.79491	-0.00045289	-1.1106	-0.00063275	569.7361352660008	40.01	1.127	39.86	39.131	40.258	-0.1497					65	29	5	0	0	0	1.0393	1	3437	3437		40.778	1.5253	1	3592500	+		58158	25364	40746	40809	63600	63600					-0.10491614445300002
PKGCRKPMQT	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))PKGCRKPM(Oxidation (M))QT_		PKGCRKPM(1)QT		PKGCRKPM(58)QT	1	0	1			REV__ENST00000523714.5_1_5:150503855-150503918:-|nuORF	REV__ENST00000523714.5_1_5:150503855-150503918:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	602.30322265625	2	602.302275	1202.59	-0.86219	-0.0005193	1.9996	0.0012043	1.1374	0.00068505	602.3035732806084	30.877	1.4855	30.889	30.458	31.943	0.011797					101	35	5	0	0	0	0.83673	2	1999	1999;2011		58.23	13.853	1	5988800	+		58159	34359	40747	40810	63601;63602	63601		933			-0.0031938435754454986
PKGFFSKT	8	Unmodified	_PKGFFSKT_					0	0	0		ENST00000323699.8_1_1:224380189-224380246:+|nuORF	ENST00000323699.8_1_1:224380189-224380246:+|nuORF	ENST00000323699.8_1_1:224380189-224380246:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7784423828125	2	456.252903	910.491253	0.083667	3.8173E-05	-2.7263	-0.0012439	-2.6427	-0.0012057	456.25090848197897	43.035	0.96652	42.896	42.243	43.21	-0.13929					72	26	4	0	0	0	0.027866	1	3986	3986		35.618	3.6634	1	2449100			58160	12243	40748	40811	63603	63603					0.03242703731382335
PKGKATPTK	9	Unmodified	_PKGKATPTK_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.76837158203125	2	464.284734	926.554916	-0.96748	-0.00044919	-0.09677	-4.4929E-05	-1.0642	-0.00049411	464.2845423248883	43.945	0.59773	43.701	43.412	44.01	-0.2444					35	15	3	0	0	0	0.024367	1	4063	4063		22.58	0	1	1231100	+		58161	37281	40749	40812	63604	63604					0.08870064168445424
PKGKKRMNN	9	Unmodified	_PKGKKRMNN_					0	0	0			REV__ENSG00000124920|ENST00000278836|MYRF	REV__ENSG00000124920|ENST00000278836|MYRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8157958984375	2	536.805842	1071.59713	-0.092372	-4.9586E-05	3.8718	0.0020784	3.7794	0.0020288	536.8112198570602	71.445	1.0243	71.17	70.525	71.549	-0.2751					25	23	2	0	0	0	0.024541	1	8372	8372		11.511	0	1	138900	+		58162	22796	40750	40813	63605	63605					0.0641971630518583
PKGKKSPTR	9	Unmodified	_PKGKKSPTR_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.73822021484375	2	499.808908	997.603263	-0.032825	-1.6406E-05	0.84879	0.00042423	0.81597	0.00040783	499.8091895928141	34.323	0.61506	34.099	33.844	34.459	-0.22412					34	15	3	0	0	0	0.024541	1	2480	2480		10.265	0	1	895770	+		58163	21662	40751	40814	63606	63606					0.10436557808361613
PKGLGRPERQS	11	Unmodified	_PKGLGRPERQS_					0	0	0			REV__ENST00000451682.5_1_7:98988617-98988704:+|nuORF	REV__ENST00000451682.5_1_7:98988617-98988704:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	612.7982177734375	2	612.84401	1223.67347	-0.19736	-0.00012095	4.0208	0.0024641	3.8234	0.0023432	612.8463575446406	58.629	0.27808	58.447	58.268	58.546	-0.18134					15	6	3	0	0	0	0.024747	1	6466	6466		24.519	7.0512	1	329240	+		58164	32722	40752	40815	63607	63607					0.07057811406161818
PKGPKTFLSP	10	Unmodified	_PKGPKTFLSP_					0	0	0		nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-2|FAM184A;ENSG00000111879|ENST00000338891|FAM184A;ENST00000482219.6_1_6:119281270-119283167:-|nuORF	nc|ENSG00000111879|Q8NB25-4|FAM184A	nc|ENSG00000111879|Q8NB25-4|FAM184A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2786865234375	2	536.313492	1070.61243	1.5125	0.00081117	3.1831	0.0017071	4.6956	0.0025183	536.8165459673097	24.62	0.43742	24.44	24.241	24.678	-0.18089					14	9	3	0	0	0	0.03519	1	1089	1089		21.686	0	1	127650			58165	3154	40753	40816	63608	63608					0.07994906374028687
PKGPVKRS	8	Unmodified	_PKGPVKRS_					0	0	0			REV__ENST00000299088.10_1_14:23467769-23467862:-|nuORF	REV__ENST00000299088.10_1_14:23467769-23467862:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.28741455078125	2	434.771794	867.529036	-0.58443	-0.00025409	1.6732	0.00072744	1.0887	0.00047335	434.7719596964891	26.089	0.43131	25.853	25.636	26.067	-0.23603					19	11	2	0	0	0	0.027866	1	1312	1312		17.365	0	1	325680	+		58166	30030	40754	40817	63609	63609					0.08997214716839608
PKGRFPPA	8	Unmodified	_PKGRFPPA_					0	0	0			REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	REV__ENST00000394785.7_1_4:103997423-103997750:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.2115173339844	2	435.253237	868.491922	0.046963	2.0441E-05	3.1811	0.0013846	3.2281	0.001405	435.25348292497665	42.971	0.83559	42.971	42.461	43.296	0					40	22	2	0	0	0	0.027866	1	3968	3968		37.028	22.364	1	437260	+		58167	31675	40755	40818	63610	63610					0.05241543171075591
PKGYLGTVVL	10	Unmodified	_PKGYLGTVVL_					0	0	0			REV__nc|ENSG00000186431|P24071-8|FCAR	REV__nc|ENSG00000186431|P24071-8|FCAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2969970703125	2	523.815867	1045.61718	0.27241	0.00014269	-0.85873	-0.00044982	-0.58632	-0.00030712	523.8155464216084	100.47	0.41194	100.46	100.17	100.58	-0.0051727					15	9	2	0	0	0	0.03519	1	12747	12747		32.812	0	1	137250	+		58168	37027	40756	40819	63611	63611					0.09619790516831017
PKHKLLEVL	9	Unmodified	_PKHKLLEVL_					0	0	0			REV__CON__P02769	REV__CON__P02769	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.8250122070312	2	538.844959	1075.67537	-1.0926	-0.00058876	0.7454	0.00040166	-0.34723	-0.0001871	538.845614255842	48.102	0.25816	48.169	48.043	48.301	0.066795					11	6	2	0	0	0	0.024263	1	4822	4822		51.335	2.1247	1	129160	+	+	58169	19542	40757	40820	63612	63612					0.14055472162090155
PKHLLLRSK	9	Unmodified	_PKHLLLRSK_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3273315429688	2	546.356025	1090.6975	-0.72721	-0.00039731	0.43651	0.00023849	-0.2907	-0.00015882	546.3561148084876	57.362	0.73159	57.362	56.872	57.603	0					42	19	3	0	0	0	0.024418	1	6458	6458		37.812	3.639	1	559050			58170	6136	40758	40821	63613	63613					0.15577696630498394
PKHLLLRSK	9	Unmodified	_PKHLLLRSK_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.327880859375	2	546.356025	1090.6975	-0.24606	-0.00013443	-0.1419	-7.7526E-05	-0.38795	-0.00021196	546.355901666155	57.644	0.68183	57.469	56.964	57.646	-0.1749					39	17	3	0	0	0	0.024374	1	6466	6466		25.574	2.5316	1	346920			58171	6136	40758	40821	63614	63614					0.15577696630498394
PKHRLIKV	8	Unmodified	_PKHRLIKV_					0	0	0		nc|ENSG00000107338|Q15464-2|SHB;ENSG00000105251|ENST00000543264|SHD;ENSG00000107338|ENST00000377707|SHB	nc|ENSG00000107338|Q15464-2|SHB	nc|ENSG00000107338|Q15464-2|SHB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2700500488281	2	495.832186	989.649819	0.51363	0.00025467	4.4388	0.0022009	4.9525	0.0024556	495.8342462856983	40.405	1.2472	40.405	39.733	40.981	0					51	34	2	0	0	0	0.027866	1	3443	3443		18.324	5.3652	1	186030			58172	2652	40759	40822	63615	63615					0.15458042430316254
PKHRLIKV	8	Unmodified	_PKHRLIKV_					0	0	0		nc|ENSG00000107338|Q15464-2|SHB;ENSG00000105251|ENST00000543264|SHD;ENSG00000107338|ENST00000377707|SHB	nc|ENSG00000107338|Q15464-2|SHB	nc|ENSG00000107338|Q15464-2|SHB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.832186	989.649819	0.58729	0.0002912	4.673	0.002317	5.2603	0.0026082	495.8344258129156	40.605	1.2991	40.486	39.86	41.159	-0.11964	-0.04211	-0.00034163	NaN	18.324	56	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143040			58173	2652	40759	40822							0.15458042430316254
PKHRLIKV	8	Unmodified	_PKHRLIKV_					0	0	0		nc|ENSG00000107338|Q15464-2|SHB;ENSG00000105251|ENST00000543264|SHD;ENSG00000107338|ENST00000377707|SHB	nc|ENSG00000107338|Q15464-2|SHB	nc|ENSG00000107338|Q15464-2|SHB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.832186	989.649819	-0.33761	-0.0001674	5.3363	0.0026459	4.9987	0.0024785	495.83468228653095	40.69	1.5805	40.713	40.126	41.706	0.023006	0.18532	0.00031615	NaN	18.324	64	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241180			58174	2652	40759	40822							0.15458042430316254
PKHRLIKV	8	Unmodified	_PKHRLIKV_					0	0	0		nc|ENSG00000107338|Q15464-2|SHB;ENSG00000105251|ENST00000543264|SHD;ENSG00000107338|ENST00000377707|SHB	nc|ENSG00000107338|Q15464-2|SHB	nc|ENSG00000107338|Q15464-2|SHB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.832186	989.649819	-0.74285	-0.00036833	5.4206	0.0026877	4.6778	0.0023194	495.83478130362823	40.639	0.49052	40.489	40.404	40.894	-0.1497	-0.03865	0.00039979	NaN	18.324	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127000			58175	2652	40759	40822							0.15458042430316254
PKHRLIKV	8	Unmodified	_PKHRLIKV_					0	0	0		nc|ENSG00000107338|Q15464-2|SHB;ENSG00000105251|ENST00000543264|SHD;ENSG00000107338|ENST00000377707|SHB	nc|ENSG00000107338|Q15464-2|SHB	nc|ENSG00000107338|Q15464-2|SHB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.832186	989.649819	-0.16662	-8.2614E-05	4.6291	0.0022953	4.4625	0.0022126	495.8342904509389	40.676	0.92827	40.451	40.041	40.969	-0.225	-0.076484	-0.00038516	NaN	18.324	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150440			58176	2652	40759	40822							0.15458042430316254
PKHRLIKV	8	Unmodified	_PKHRLIKV_					0	0	0		nc|ENSG00000107338|Q15464-2|SHB;ENSG00000105251|ENST00000543264|SHD;ENSG00000107338|ENST00000377707|SHB	nc|ENSG00000107338|Q15464-2|SHB	nc|ENSG00000107338|Q15464-2|SHB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.832186	989.649819	-1.2071	-0.00059854	5.9036	0.0029272	4.6965	0.0023287	495.8349659850094	40.853	1.5735	40.622	39.623	41.196	-0.23029	0.094371	0.00087874	NaN	18.324	52	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138730			58177	2652	40759	40822							0.15458042430316254
PKIFIVYPK	9	Unmodified	_PKIFIVYPK_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4;REV__ENSG00000150054|ENST00000683449|MPP7	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.810791015625	2	552.844428	1103.6743	-0.99684	-0.0005511	-4.0315	-0.0022288	-5.0283	-0.0027799	552.8421461855125	51.654	0.23814	51.506	51.371	51.609	-0.14735					10	6	2	0	0	0	0.024436	1	5474	5474		47.916	10.756	1	101040	+		58178	20689;24710	40760	40823	63616	63616					0.12661257793160985
PKIIVVERMK	10	Unmodified	_PKIIVVERMK_					0	0	0		nc|ENSG00000070985|Q9NZQ8-3|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.92303466796875	3	404.921409	1211.7424	-0.22601	-9.1516E-05	3.0431	0.0012322	2.8171	0.0011407	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	1.1161	1	1373	1373		30.569	5.4429	1	42722000			58179	18073	40761	40824	63617	63617					0.14499759381533295
PKIQFLVTC	9	Unmodified	_PKIQFLVTC_					0	0	0			REV__ENSG00000108384|ENST00000337432|RAD51C	REV__ENSG00000108384|ENST00000337432|RAD51C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7435302734375	2	524.79662	1047.57869	-0.40051	-0.00021019	3.5036	0.0018387	3.1031	0.0016285	524.7979652761891	40.149	0.50097	39.918	39.507	40.008	-0.23021					19	12	2	0	0	0	0.024487	1	3424	3424		11.511	0	1	275460	+		58180	21728	40762	40825	63618	63618					0.05680161610644063
PKIQRSEA	8	Unmodified	_PKIQRSEA_					0	0	0		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.7640380859375	2	464.764166	927.513779	-1.0227	-0.00047534	0.88755	0.0004125	-0.13519	-6.2833E-05	464.7644652008635	21.743	0.53197	21.531	21.266	21.798	-0.2128					23	10	3	0	0	0	1.0106	1	685	685		35.618	0	1	242260			58181	1313	40763	40826	63619	63619					0.047123031289856954
PKKAGIVGAVV	11	Unmodified	_PKKAGIVGAVV_					0	0	0			REV__ENSG00000155897|ENST00000286355|ADCY8	REV__ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.76611328125	2	519.837134	1037.65972	-0.017554	-9.1251E-06	-0.97721	-0.00050799	-0.99477	-0.00051712	519.8367089354741	47.176	0.3861	46.982	46.886	47.272	-0.19387					16	9	2	0	0	0	0.024724	1	4636	4636		20.947	0	1	94027	+		58182	25036	40764	40827	63620	63620					0.14239185645033103
PKKAHEFLAI	10	Unmodified	_PKKAHEFLAI_					0	0	0			REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF	REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.28515625	2	577.340041	1152.66553	-1.3766	-0.00079479	1.6423	0.00094815	0.26565	0.00015337	577.3405977996614	28.95	0.21813	28.705	28.578	28.796	-0.24524					7	4	2	0	0	0	0.03519	1	1740	1740		39.253	4.1008	1	26235	+		58183	19950	40765	40828	63621	63621					0.09530284156721791
PKKAHEFLAI	10	Unmodified	_PKKAHEFLAI_					0	0	0			REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF	REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2854614257812	2	577.340041	1152.66553	-0.73904	-0.00042668	-0.51602	-0.00029792	-1.2551	-0.00072459	577.3396858903039	28.816	0.25397	28.667	28.572	28.826	-0.14952					6	5	2	0	0	0	0.03519	1	1689	1689		39.253	10.103	1	32963	+		58184	19950	40765	40828	63622	63622					0.09530284156721791
PKKCGILP	8	Unmodified	_PKKCGILP_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7293701171875	2	428.259674	854.504795	-0.0016393	-7.0207E-07	-2.8547	-0.0012225	-2.8563	-0.0012232	428.25685045722565	28.986	0.59922	28.837	28.572	29.171	-0.14952					17	13	3	0	0	0	0.027866	1	1696	1696		13.775	0	1	65931	+		58185	28529	40766	40829	63623	63623					0.0717223823896802
PKKFTLVI	8	Unmodified	_PKKFTLVI_					0	0	0			REV__ENSG00000174004|ENST00000328557|NRROS	REV__ENSG00000174004|ENST00000328557|NRROS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.78302001953125	2	473.310221	944.605889	-0.092226	-4.3651E-05	-4.3881	-0.0020769	-4.4803	-0.0021206	473.30809386584394	17.696	0.34828	17.49	17.216	17.564	-0.20669					8	6	2	0	0	0	0.027866	1	186	186		8.8223	0	1	37522	+		58186	26826	40767	40830	63624	63624					0.1313701321331564
PKKIKVFVL	9	Unmodified	_PKKIKVFVL_					0	0	0		ENST00000567012.5_1_16:70398922-70400166:+|nuORF;ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000567012.5_1_16:70398922-70400166:+|nuORF	ENST00000567012.5_1_16:70398922-70400166:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.304931640625	2	536.36807	1070.72159	-0.34359	-0.00018429	-2.4321	-0.0013045	-2.7757	-0.0014888	536.3669171012749	48.07	0.15206	47.884	47.749	47.902	-0.18684					5	3	2	0	0	0	0.024541	1	4737	4737		25.45	11.313	1	54492			58187	6591	40768	40831	63625	63625					0.18905537064188138
PKKKKKKD	8	Unmodified	_PKKKKKKD_					0	0	0		nc|ENSG00000124191|Q96NM4-3|TOX2;nc|ENSG00000124191|Q96NM4|TOX2;ENSG00000124191|ENST00000341197|TOX2;nc|ENSG00000124191|Q96NM4-2|TOX2;TOX3|p.S371Cfs*14|1|0.06|ENSG00000103460|chr16:52439844-52439845|-/CAAACCCAGC|frameshift_variant;ENSG00000198846|ENST00000361421|TOX;nc|ENSG00000103460|O15405-2|TOX3;ENSG00000103460|ENST00000219746|TOX3	nc|ENSG00000124191|Q96NM4-3|TOX2	nc|ENSG00000124191|Q96NM4-3|TOX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3085632324219	2	500.337301	998.66005	-0.013649	-6.8292E-06	-0.15307	-7.6584E-05	-0.16671	-8.3413E-05	500.33711440088086	21.551	0.43649	21.36	21.128	21.564	-0.19072					19	8	3	0	0	0	0.027866	1	677	677		37.159	0	1	79426			58188	4019	40769	40832	63626	63626					0.1606660536489244
PKKKKKRF	8	Unmodified	_PKKKKKRF_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	530.361111	1058.70767	-0.92828	-0.00049232	-0.00070497	-3.7389E-07	-0.92899	-0.0004927	530.3614805319071	39.937	0.21146	39.96	39.84	40.051	0.023006					8	5	2	0	0	0	0.027866	1	3424	3424		8.8223	4.8371	1	75779			58189	11056	40770	40833	63627	63627					0.18066304355738794
PKKKPALD	8	Unmodified	_PKKKPALD_					0	0	0			REV__ENSG00000173068|ENST00000380672|BNC2	REV__ENSG00000173068|ENST00000380672|BNC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2587890625	2	448.781828	895.549102	0.1617	7.257E-05	-0.163	-7.315E-05	-0.0012934	-5.8046E-07	448.7812540366021	89.044	0.21136	88.906	88.735	88.946	-0.13761					6	4	2	0	0	0	0.027866	1	10857	10857		10.866	0	1	33115	+		58190	26735	40771	40834	63628	63628					0.09714965656792174
PKKLDLFAD	9	Unmodified	_PKKLDLFAD_					0	0	0			REV__nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	REV__nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3033447265625	2	523.797675	1045.5808	0.3163	0.00016568	1.5837	0.00082954	1.9	0.00099522	523.7983007204549	89.1	0.5863	89.079	88.865	89.451	-0.021645					37	13	4	0	0	0	0.024523	1	11184	11184		15.642	3.435	1	614600	+		58191	27695	40772	40835	63629	63629					0.059829136200733046
PKKLPLIQK	9	Unmodified	_PKKLPLIQK_					0	0	0		ENSG00000069206|ENST00000175238|ADAM7;nc|ENSG00000069206|Q9H2U9-2|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	ENSG00000069206|ENST00000175238|ADAM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7818603515625	2	532.863152	1063.71175	-1.0516	-0.00056038	-2.5308	-0.0013485	-3.5824	-0.0019089	532.8620350932626	45.781	0.54094	45.629	45.379	45.92	-0.15156					28	15	3	0	0	0	0.024541	1	4483	4483		31.955	0	1	460040			58192	1398	40773	40836	63630	63630					0.18244349058795706
PKKMPALV	8	Unmodified	_PKKMPALV_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7877502441406	2	442.275324	882.536095	-0.31095	-0.00013753	3.7316	0.0016504	3.4206	0.0015129	442.276842095935	40.691	0.20316	40.714	40.527	40.73	0.023006					6	5	2	0	0	0	0.027866	1	3532	3532		20.482	0	1	171980			58193	6054	40774	40837	63631	63631					0.09012811273055377
PKKNAIHW	8	Unmodified	_PKKNAIHW_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1;REV__DAG1|p.A355Efs*82|1|0.25|ENSG00000173402|chr3:49531575-49531585|CTCCTCCAGTC/-|frameshift_variant	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2685852050781	2	497.285069	992.555585	-0.15683	-7.799E-05	-0.89286	-0.000444	-1.0497	-0.00052199	497.28446860026753	35.728	0.90232	35.53	34.974	35.876	-0.19829					53	24	3	0	0	0	0.027866	1	2646	2646		26.796	0	1	2188100	+		58194	26770;19649	40775	40838	63632	63632					0.05900903608164754
PKKNLRLVFV	10	Unmodified	_PKKNLRLVFV_					0	0	0			REV__SLITRK4|p.R645L|1|0.15|ENSG00000179542|chrX:143629175-143629175|C/A|missense_variant	REV__SLITRK4|p.R645L|1|0.15|ENSG00000179542|chrX:143629175-143629175|C/A|missense_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	405.26385498046875	3	405.264164	1212.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.49	1	114.37	113.87	114.87	-0.12891								0	0	0	0.77833	1	13787	13787		4.6126	0	1		+		58195	37514	40776	40839	63633	63633					0.17278825353128013
PKKPFCSGEP	10	Unmodified	_PKKPFCSGEP_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2752075195312	2	545.273509	1088.53247	-0.30268	-0.00016504	1.6612	0.00090583	1.3586	0.00074079	545.2750203585775	77.701	6.4864	77.49	75.581	82.067	-0.21087					410	158	6	0	0	0	1.0816	1	9744	9744		35.152	7.2698	1	57394000	+		58196	23654	40777	40840	63634	63634					-0.008259032914565978
PKKPFKQV	8	Unmodified	_PKKPFKQV_					0	0	0		ENST00000540643.5_2_22:32002357-32009472:+|nuORF	ENST00000540643.5_2_22:32002357-32009472:+|nuORF	ENST00000540643.5_2_22:32002357-32009472:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.24603271484375	2	486.30547	970.596387	2.0634	0.0010034	1.191	0.00057918	3.2544	0.0015826	486.3060465714317	23.672	0.42065	23.481	23.284	23.705	-0.19117					14	9	2	0	0	0	0.027866	1	954	954		33.516	25.284	1	36850			58197	16428	40778	40841	63635	63635					0.10991244927799926
PKKPFKQV	8	Unmodified	_PKKPFKQV_					0	0	0		ENST00000540643.5_2_22:32002357-32009472:+|nuORF	ENST00000540643.5_2_22:32002357-32009472:+|nuORF	ENST00000540643.5_2_22:32002357-32009472:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.30547	970.596387	0.16672	8.1078E-05	3.3486	0.0016284	3.5153	0.0017095	486.30709315432273	23.711	0.43784	23.509	23.398	23.835	-0.20193	0.021883	0.00069229	NaN	18.324	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41158			58198	16428	40778	40841							0.10991244927799926
PKKPFKQV	8	Unmodified	_PKKPFKQV_					0	0	0		ENST00000540643.5_2_22:32002357-32009472:+|nuORF	ENST00000540643.5_2_22:32002357-32009472:+|nuORF	ENST00000540643.5_2_22:32002357-32009472:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.30547	970.596387	-0.24888	-0.00012103	3.4841	0.0016943	3.2352	0.0015733	486.30709524160164	23.652	0.36444	23.472	23.242	23.607	-0.17989	-0.015507	0.00082407	NaN	18.324	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42483			58199	16428	40778	40841							0.10991244927799926
PKKPYPKLP	9	Unmodified	_PKKPYPKLP_					0	0	0			REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7557373046875	2	534.334227	1066.6539	-0.52722	-0.00028171	-2.6474	-0.0014146	-3.1746	-0.0016963	534.3327982231394	60.713	0.40075	60.507	60.295	60.695	-0.20599					13	9	2	0	0	0	0.024541	1	6733	6733		25.45	5.4534	1	46902	+		58200	20061	40779	40842	63636	63636					0.12324087133356443
PKKQVVHKRL	10	Unmodified	_PKKQVVHKRL_					0	0	0			REV__nc|ENSG00000178150|Q8NC26-2|ZNF114	REV__nc|ENSG00000178150|Q8NC26-2|ZNF114	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5632019042969	3	411.60318	1231.78771	-0.16929	-6.9681E-05	3.2562	0.0013402	3.0869	0.0012706	411.60453198155824	32.409	0.19963	32.251	32.163	32.363	-0.15772					6	4	2	0	0	0	0.03519	1	2208	2208		16.717	0	1	36382	+		58201	27169	40780	40843	63637	63637					0.18108745958943473
PKKRLGAA	8	Unmodified	_PKKRLGAA_					0	0	0			REV__nc|ENSG00000170374|Q8TDD2-2|SP7	REV__nc|ENSG00000170374|Q8TDD2-2|SP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.5230407714844	2	420.774337	839.534121	0.88949	0.00037428	-0.99611	-0.00041914	-0.10661	-4.486E-05	420.77389311613314	19.541	0.34929	19.341	19.156	19.505	-0.2001					12	6	2	0	0	0	0.027866	1	430	430		18.324	4.5491	1	50144	+		58202	26461	40781	40844	63638	63638					0.1079351857946449
PKKRRIKPKK	10	Unmodified	_PKKRRIKPKK_					0	0	0			REV__nc|ENSG00000137413|Q7Z7C8-2|TAF8	REV__nc|ENSG00000137413|Q7Z7C8-2|TAF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.234619140625	3	426.966341	1277.87719	-0.49821	-0.00021272	-0.63663	-0.00027182	-1.1348	-0.00048454	427.29927890860375	28.001	0.14889	27.997	27.929	28.078	-0.0042019					5	3	2	0	0	0	0.03519	1	1573	1573		1.7563	0	1	35573	+		58203	36700	40782	40845	63639	63639					0.2493700063828328
PKKSKEKSAS	10	Unmodified	_PKKSKEKSAS_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3163452148438	2	545.316763	1088.61897	-0.23183	-0.00012642	0.0239	1.3033E-05	-0.20793	-0.00011339	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0616	1	11193	11193		37.812	4.9991	1	11601000	+		58204	22435	40783	40846	63640	63640					0.07820799534761136
PKKSKEKSAS	10	Unmodified	_PKKSKEKSAS_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.316763	1088.61897	-0.95669	-0.0005217	0.92924	0.00050673	-0.027442	-1.4965E-05	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0992	1	10909	10909		32.812	5.7651	1	15621000	+		58205	22435	40783	40846	63641	63641					0.07820799534761136
PKKSKEKSAS	10	Unmodified	_PKKSKEKSAS_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3162841796875	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0616	2	10947	10899;10947		37.812	2.3396	1	17400000	+		58206	22435	40783	40846	63642;63643	63643					0.07820799534761136
PKKSKEKSAS	10	Unmodified	_PKKSKEKSAS_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3162841796875	2	545.316763	1088.61897	-0.30292	-0.00016519	0.10816	5.8979E-05	-0.19476	-0.00010621	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.94316	2	10884	10872;10884		51.193	12.439	1	17068000	+		58207	22435	40783	40846	63644;63645	63645					0.07820799534761136
PKKTISVAR	9	Unmodified	_PKKTISVAR_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.30206298828125	2	500.319109	998.623664	-0.47945	-0.00023988	-1.2254	-0.00061308	-1.7048	-0.00085295	500.3176307248742	32.759	0.18524	32.759	32.642	32.827	0					6	4	2	0	0	0	0.024319	1	2305	2305		47.657	8.8512	1	17051			58208	3974	40784	40847	63646	63646					0.12429728468180201
PKKTKISPF	9	Unmodified	_PKKTKISPF_					0	0	0		ENSG00000166220|ENST00000456372|TBATA;nc|ENSG00000166220|Q96M53|TBATA	ENSG00000166220|ENST00000456372|TBATA	ENSG00000166220|ENST00000456372|TBATA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2579956054688	2	523.32386	1044.63317	-1.0438	-0.00054624	-3.4502	-0.0018056	-4.494	-0.0023518	523.3217715890395	23.8	0.51582	23.8	23.607	24.123	0					16	11	2	0	0	0	0.024506	1	983	983		30.504	8.5438	1	75197			58209	7525	40785	40848	63647	63647					0.1126349675369056
PKKVLLTRIF	10	Unmodified	_PKKVLLTRIF_					0	0	0			REV__ENSG00000164543|ENST00000319357|STK17A	REV__ENSG00000164543|ENST00000319357|STK17A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9230041503906	3	405.604298	1213.79106	-0.97708	-0.00039631	2.0263	0.00082187	1.0492	0.00042556	405.60501175371155	26.488	0.25888	26.325	26.199	26.458	-0.16331					9	6	2	0	0	0	0.03519	1	1353	1353		20.03	13.012	1	71383	+		58210	25771	40786	40849	63648	63648					0.19271996012935233
PKLERLDSK	9	Unmodified	_PKLERLDSK_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.3145141601562	2	543.319306	1084.62406	-0.39939	-0.000217	0.19386	0.00010533	-0.20553	-0.00011167	543.3192067850159	42.254	0.45494	42.131	41.888	42.343	-0.12299					21	11	2	0	0	0	0.024261	1	3769	3769		64.207	5.9773	1	255420			58211	5408	40787	40850	63649	63649					0.08513103397353916
PKLERLDSK	9	Unmodified	_PKLERLDSK_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.314453125	2	543.319306	1084.62406	-0.63829	-0.00034679	0.54798	0.00029773	-0.09031	-4.9067E-05	543.3195187684919	42.446	0.41455	42.214	41.971	42.385	-0.23186					19	10	2	0	0	0	0.024344	1	3787	3787		54.776	3.4409	1	321260			58212	5408	40787	40850	63650	63650					0.08513103397353916
PKLEVVCPD	9	Unmodified	_PKLEVVCPD_					0	0	0		ENST00000315302.6_1_4:183063492-183063612:-|nuORF	ENST00000315302.6_1_4:183063492-183063612:-|nuORF	ENST00000315302.6_1_4:183063492-183063612:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3006591796875	2	500.26261	998.510668	-0.32371	-0.00016194	3.4964	0.0017491	3.1727	0.0015872	500.264240598613	32.32	0.53969	32.32	32.03	32.569	0					24	13	2	0	0	0	0.024447	1	2269	2269		40.778	15.204	1	859350			58213	12135	40788	40851	63651	63651					0.011352919599630695
PKLGLKGPK	9	Unmodified	_PKLGLKGPK_					0	0	0		AHNAK2|p.D779G|1|0.35|ENSG00000185567|chr14:104953115-104953115|T/C|missense_variant	AHNAK2|p.D779G|1|0.35|ENSG00000185567|chr14:104953115-104953115|T/C|missense_variant	AHNAK2|p.D779G|1|0.35|ENSG00000185567|chr14:104953115-104953115|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2841796875	2	469.313295	936.612037	0.12632	5.9286E-05	-0.17285	-8.1122E-05	-0.046528	-2.1836E-05	469.31305564978015	50.922	1.1194	50.773	50.356	51.475	-0.14916					81	31	3	0	0	0	0.024381	1	5375	5375		45.952	5.3793	1	3265000			58214	50	40789	40852	63652	63652					0.14119531444850963
PKLGTHKT	8	Unmodified	_PKLGTHKT_					0	0	0			REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.78778076171875	2	441.263802	880.513051	0.11161	4.9249E-05	-0.17866	-7.8836E-05	-0.06705	-2.9587E-05	441.26361759885555	43.798	0.72589	43.829	43.376	44.102	0.030827					41	19	3	0	0	0	0.027866	1	4000	4000		10.866	0	1	628800	+		58215	22213	40790	40853	63653	63653					0.06801508479941276
PKLLAKPP	8	Unmodified	_PKLLAKPP_					0	0	0			REV__ENSG00000172482|ENST00000307503|AGXT	REV__ENSG00000172482|ENST00000307503|AGXT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2558288574219	2	432.289288	862.564024	0.57288	0.00024765	-0.39389	-0.00017027	0.17899	7.7376E-05	432.29082891056373	102.89	0.19566	102.77	102.67	102.86	-0.12724					5	4	2	0	0	0	0.027866	1	12789	12789		28.254	11.549	1	35217	+		58216	26676	40791	40854	63654	63654					0.12724457524791433
PKLNKMLL	8	Unmodified	_PKLNKMLL_					0	0	0			REV__ENSG00000175764|ENST00000321582|TTLL11	REV__ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7545166015625	2	478.801706	955.588859	-0.13766	-6.5912E-05	1.2926	0.0006189	1.1549	0.00055299	478.8016371082432	33.644	0.22823	33.65	33.498	33.726	0.0066261					6	5	2	0	0	0	0.027866	1	2425	2425		7.6903	0	1	42160	+		58217	26970	40792	40855	63655	63655					0.10928769335873767
PKLPLALGPAP	11	Unmodified	_PKLPLALGPAP_					0	0	0			REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.8079223632812	2	537.33951	1072.66447	-0.11727	-6.3015E-05	-0.90817	-0.00048799	-1.0254	-0.00055101	537.3392494835533	77.596	0.5954	77.334	77.099	77.694	-0.26202					17	13	2	0	0	0	0.024749	1	9223	9223		29.15	0	1	332310	+		58218	27076	40793	40856	63656	63656					0.13104069787800654
PKLRKRMRK	9	Unmodified	_PKLRKRMRK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9229736328125	3	404.932643	1211.7761	-0.23263	-9.4199E-05	2.2643	0.00091688	2.0317	0.00082268	404.9337795790096	26.484	0.58381	26.248	26.037	26.62	-0.23603					34	15	3	0	0	0	0.024541	1	1350	1350		12.812	0	1	521120			58219	3177	40794	40857	63657	63657					0.17868225663937665
PKLRKRMRK	9	Unmodified	_PKLRKRMRK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9228820800781	3	404.932643	1211.7761	0.51416	0.0002082	2.561	0.001037	3.0752	0.0012452	404.93424939504314	26.229	0.35427	26.061	25.87	26.224	-0.16816					22	10	3	0	0	0	0.024541	1	1324	1324		13.454	2.8672	1	317390			58220	3177	40794	40857	63658	63658					0.17868225663937665
PKLRKRMRK	9	Unmodified	_PKLRKRMRK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	3	404.932643	1211.7761	0.53177	0.00021533	-3.7908	-0.001535	-3.259	-0.0013197	404.93112603075315	26.111	0.14803	25.943	25.809	25.958	-0.16816					6	4	2	0	0	0	0.024541	1	1291	1291		18.262	0	1	149420			58221	3177	40794	40857	63659	63659					0.17868225663937665
PKLSKTSFK	9	Unmodified	_PKLSKTSFK_					0	0	0		ENST00000486029.1_1_X:18694175-18709044:+|nuORF	ENST00000486029.1_1_X:18694175-18709044:+|nuORF	ENST00000486029.1_1_X:18694175-18709044:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7930297851562	2	518.313492	1034.61243	0.11678	6.0529E-05	-1.2632	-0.00065475	-1.1464	-0.00059422	518.3124995689401	63.875	0.35567	63.683	63.565	63.921	-0.19243					11	8	2	0	0	0	0.024527	1	7277	7277		31.53	24.336	1	94554			58222	15336	40795	40858	63660	63660					0.09650906374031365
PKLSKTSFK	9	Unmodified	_PKLSKTSFK_					0	0	0		ENST00000486029.1_1_X:18694175-18709044:+|nuORF	ENST00000486029.1_1_X:18694175-18709044:+|nuORF	ENST00000486029.1_1_X:18694175-18709044:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.313492	1034.61243	0.14933	7.7397E-05	-0.76197	-0.00039494	-0.61264	-0.00031754	518.313007045214	63.952	0.30937	63.694	63.565	63.875	-0.25824	0.0054979	0.0002999	NaN	39.253	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84600			58223	15336	40795	40858							0.09650906374031365
PKLSSCTYSI	10	Unmodified	_PKLSSCTYSI_					0	0	0		ENSG00000009724|ENST00000400897|MASP2	ENSG00000009724|ENST00000400897|MASP2	ENSG00000009724|ENST00000400897|MASP2	MSMS	OPSCC_40_ClassI_Rep-2	5	549.7791748046875	2	549.778625	1097.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.12	1	101.99	101.49	102.49	-0.12666								0	0	0	0.68916	1	12695	12695		60.118	5.3419	1				58224	860	40796	40859	63661	63661					-0.0021734035690315068
PKLTSSVNP	9	Unmodified	_PKLTSSVNP_					0	0	0			REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF	REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.30035400390625	2	471.766374	941.518196	-0.64956	-0.00030644	2.7716	0.0013075	2.122	0.0010011	471.766899791731	38.274	0.47765	38.053	37.898	38.375	-0.22148					16	13	2	0	0	0	0.024447	1	3133	3133		25.574	10.91	1	131250	+		58225	34544	40797	40860	63662	63662					0.04509767551905952
PKLVLKID	8	Unmodified	_PKLVLKID_					0	0	0		nc|ENSG00000175984|Q68D51-3|DENND2C	nc|ENSG00000175984|Q68D51-3|DENND2C	nc|ENSG00000175984|Q68D51-3|DENND2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7375183105469	2	463.307678	924.600803	0.74211	0.00034383	0.2559	0.00011856	0.99802	0.00046239	463.3072586356591	72.756	0.93739	72.474	72.062	72.999	-0.28124					46	22	3	0	0	0	0.027866	1	8866	8866		50.025	7.5501	1	569760			58226	18534	40798	40861	63663	63663					0.13548709350698118
PKLVLKID	8	Unmodified	_PKLVLKID_					0	0	0		nc|ENSG00000175984|Q68D51-3|DENND2C	nc|ENSG00000175984|Q68D51-3|DENND2C	nc|ENSG00000175984|Q68D51-3|DENND2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7373962402344	2	463.307678	924.600803	1.2152	0.00056301	-0.24073	-0.00011153	0.97446	0.00045147	463.3070455438966	72.453	0.84372	72.462	72.058	72.902	0.0097733					40	20	3	0	0	0	0.027866	1	8781	8781		44.117	5.3107	1	605790			58227	18534	40798	40861	63664	63664					0.13548709350698118
PKLYIFSAF	9	Unmodified	_PKLYIFSAF_					0	0	0			REV__ENSG00000176231|ENST00000322107|OR10H4	REV__ENSG00000176231|ENST00000322107|OR10H4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2677612304688	2	543.305136	1084.59572	-0.085212	-4.6296E-05	1.9015	0.0010331	1.8162	0.00098677	543.3069397012448	36.507	0.44253	36.291	36.088	36.531	-0.21661					20	10	3	0	0	0	0.024487	1	2855	2855		17.365	0	1	120930	+		58228	27008	40799	40862	63665	63665					0.05680405488078577
PKMKNKPRS	9	Unmodified	_PKMKNKPRS_					0	0	0		ENST00000524899.1_1_11:67052494-67052918:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000173020|ENST00000308595|GRK2;ADRBK1|p.V672M|1|0.16|ENSG00000173020|chr11:67285394-67285394|G/A|missense_variant	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	ENST00000524899.1_1_11:67052494-67052918:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2898559570312	2	543.316043	1084.61753	-0.95686	-0.00051988	3.1043	0.0016866	2.1474	0.0011667	543.8193746365749	48.264	0.21221	48.166	48.114	48.326	-0.097553					6	5	2	0	0	0	0.024523	1	4775	4775		29.15	4.6304	1	69760			58229	8334	40800	40863	63666	63666					0.07860886964999736
PKMLAILW	8	Unmodified	_PKMLAILW_					0	0	0		ENSG00000181609|ENST00000322641|OR52D1	ENSG00000181609|ENST00000322641|OR52D1	ENSG00000181609|ENST00000322641|OR52D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2871398925781	2	486.290974	970.567395	-0.19586	-9.5245E-05	-3.5937	-0.0017476	-3.7895	-0.0018428	486.2893872568739	38.356	0.37949	38.137	37.988	38.368	-0.21848					14	10	2	0	0	0	0.027866	1	3185	3185		14.664	0	1	105430			58230	9051	40801	40864	63667	63667					0.08093384307164797
PKMNEKKN	8	Unmodified	_PKMNEKKN_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7906494140625	2	494.765852	987.51715	-1.1145	-0.00055142	0.74939	0.00037077	-0.36512	-0.00018065	494.7662010433924	24.497	0.44952	24.45	24.264	24.714	-0.047148					13	9	2	0	0	0	0.027866	1	1036	1036		63.306	0	1	51315	+		58231	20653	40802	40865	63668	63668					0.022892299113550507
PKMNMITA	8	Unmodified	_PKMNMITA_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2482604980469	2	453.232799	904.451044	-0.68958	-0.00031254	1.7641	0.00079955	1.0745	0.00048701	453.2335018726199	25.395	0.99688	25.36	24.727	25.723	-0.034397					31	23	2	0	0	0	0.027866	1	1205	1205		12.207	0	1	439390			58232	18475	40803	40866	63669	63669					-0.005003022550681635
PKMTKETATT	10	Unmodified	_PKMTKETATT_					0	0	0		nc|ENSG00000116690|Q92954-6|PRG4;ENSG00000116690|ENST00000445192|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7557983398438	2	554.289356	1106.56416	0.19874	0.00011016	-2.863	-0.0015869	-2.6643	-0.0014768	554.2877540471364	22.988	0.56127	22.786	22.453	23.014	-0.20193					15	11	2	0	0	0	0.03519	1	835	835		26.693	8.3685	1	27039			58233	3566	40804	40867	63670	63670					0.015140446718305611
PKNCKPAP	8	Unmodified	_PKNCKPAP_					0	0	0			REV__nc|ENSG00000143322|P42684-4|ABL2	REV__nc|ENSG00000143322|P42684-4|ABL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.7297668457031	2	427.73128	853.448008	-0.16618	-7.108E-05	-3.7389	-0.0015992	-3.9051	-0.0016703	427.72955809338526	28.876	1.1973	28.707	28.254	29.451	-0.16897					59	27	4	0	0	0	0.88442	1	1741	1741		52.299	6.3472	1	1499700	+		58234	24225	40805	40868	63671	63671					0.015421906824371945
PKNMHWYSPPE	11	Unmodified	_PKNMHWYSPPE_					0	0	0		nc|ENSG00000080822|Q9NY35-2|CLDND1;ENSG00000080822|ENST00000341181|CLDND1;ENST00000507411.5_1_3:98235680-98240280:-|nuORF;ENST00000502980.1_1_3:98239917-98241743:-|nuORF;ENST00000513988.1_1_3:98237648-98240280:-|nuORF;ENST00000508503.5_1_3:98235702-98241699:-|nuORF	nc|ENSG00000080822|Q9NY35-2|CLDND1	nc|ENSG00000080822|Q9NY35-2|CLDND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.2760314941406	3	462.548412	1384.62341	-0.57395	-0.00026548	0.015728	7.2749E-06	-0.55822	-0.0002582	462.5482126968198	37.557	0.6713	37.494	37.091	37.762	-0.063385					32	18	3	0	0	0	0.024746	1	3065	3065		15.921	5.3339	1	361260			58235	1696	40806	40869	63672	63672					-0.053520593139865014
PKNMTKVEKW	10	Unmodified	_PKNMTKVEKW_					0	0	0			REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	630.2697143554688	2	630.842091	1259.66963	0.41278	0.0002604	0.25108	0.00015839	0.66386	0.00041879	630.8414629561796	70.941	0.34987	70.727	70.563	70.913	-0.21425					17	7	3	0	0	0	0.03519	1	8251	8251		31.53	1.2121	1	456400	+		58236	32120	40807	40870	63673	63673					0.05018005588112828
PKNMTKVEKW	10	Unmodified	_PKNMTKVEKW_					0	0	0			REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	630.842091	1259.66963	-0.38113	-0.00024043	2.5961	0.0016377	2.215	0.0013973	631.3459868900064	71.171	0.48937	70.9	70.658	71.147	-0.27185	0.08687	0.0014531	NaN	31.53	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302750	+		58237	32120	40807	40870							0.05018005588112828
PKNMTKVEKW	10	Unmodified	_PKNMTKVEKW_					0	0	0			REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	REV__ENST00000418559.5_1_2:183605037-183617329:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	630.842091	1259.66963	-0.6068	-0.00038279	1.6224	0.0010235	1.0156	0.00064069	630.842528569012	71.069	0.38705	70.812	70.651	71.038	-0.25712	-0.0010089	0.00022463	NaN	31.53	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339960	+		58238	32120	40807	40870							0.05018005588112828
PKNYVIWAS	9	Unmodified	_PKNYVIWAS_					0	0	0			REV__ENST00000454465.1_1_2:87355723-87398314:+|nuORF;REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.816162109375	2	539.290017	1076.56548	-1.0759	-0.00058021	-3.2311	-0.0017425	-4.307	-0.0023227	539.7897420511674	40.763	0.54856	40.786	40.527	41.076	0.023006					30	15	3	0	0	0	0.024523	1	3588	3588		10.265	0	1	208930	+		58239	24886;32761	40808	40871	63674	63674					0.03026046822878925
PKPAVRQR	8	Unmodified	_PKPAVRQR_					0	0	0			REV__nc|ENSG00000167323|Q13586|STIM1	REV__nc|ENSG00000167323|Q13586|STIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.237548828125	2	476.295968	950.577383	-0.27166	-0.00012939	2.5771	0.0012275	2.3055	0.0010981	476.29670384820054	32.724	0.68604	32.562	32.117	32.803	-0.16216					27	16	2	0	0	0	0.027866	1	2221	2221		12.959	0	1	81885	+		58240	26131	40809	40872	63675	63675					0.10011708356751114
PKPAVRQR	8	Unmodified	_PKPAVRQR_					0	0	0			REV__nc|ENSG00000167323|Q13586|STIM1	REV__nc|ENSG00000167323|Q13586|STIM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.295968	950.577383	0.22857	0.00010887	1.473	0.00070157	1.7015	0.00081044	476.2964005143987	32.505	0.57788	32.268	32.086	32.664	-0.23666	-0.14703	-0.00052829	NaN	12.959	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82953	+		58241	26131	40809	40872							0.10011708356751114
PKPDPTVI	8	Unmodified	_PKPDPTVI_					0	0	0		ENSG00000152689|ENST00000403687|RASGRP3;nc|ENSG00000152689|Q8IV61-2|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.9128112792969	2	433.752736	865.490919	0.071239	3.09E-05	-2.924	-0.0012683	-2.8527	-0.0012374	433.7514523282143	21.418	0.67418	21.49	21.205	21.879	0.071487					19	13	2	0	0	0	0.027866	1	587	587		25.45	0	1	178890			58242	6295	40810	40873	63676	63676					0.05279284011510299
PKPDRVTL	8	Unmodified	_PKPDRVTL_					0	0	0		nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;ENST00000592322.5_1_19:38901850-38916815:-|nuORF;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4;nc|ENSG00000171777|Q8TDF6-6|RASGRP4;nc|ENSG00000171777|Q8TDF6-5|RASGRP4;nc|ENSG00000171777|Q8TDF6-9|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	nc|ENSG00000171777|Q8TDF6-7|RASGRP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.2764892578125	2	463.276909	924.539266	0.51189	0.00023714	-0.6685	-0.0003097	-0.15661	-7.2555E-05	463.2764895748961	59.352	0.75575	59.171	58.831	59.587	-0.18134					41	18	3	0	0	0	0.77775	1	6560	6560		60.972	3.1607	1	1132300			58243	8190	40811	40874	63677	63677					0.07397777651419801
PKPGAKRL	8	Unmodified	_PKPGAKRL_					0	0	0		ENSG00000229924|ENST00000512047|FAM90A26;ENSG00000171847|ENST00000538603|FAM90A1;nc|ENSG00000205879|Q658T7|FAM90A2P;nc|ENSG00000205879|Q658T7-2|FAM90A2P	ENSG00000229924|ENST00000512047|FAM90A26	ENSG00000229924|ENST00000512047|FAM90A26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2559509277344	2	433.782162	865.549771	0.55901	0.00024249	4.4752	0.0019413	5.0342	0.0021838	433.78479693310345	102.78	0.20014	102.78	102.59	102.79	-0.0046005					6	4	2	0	0	0	0.027866	1	13073	13073		26.796	13.021	1	234050			58244	8203	40812	40875	63678	63678					0.11161805096514854
PKPGLFGFAL	10	Unmodified	_PKPGLFGFAL_					0	0	0			REV__ENST00000483458.1_1_9:131831674-131832729:+|nuORF	REV__ENST00000483458.1_1_9:131831674-131832729:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2772827148438	2	523.805303	1045.59605	-0.15527	-8.1329E-05	-1.0705	-0.00056071	-1.2257	-0.00064204	523.8048332557859	46.206	0.24049	46.257	46.167	46.408	0.051395					8	6	2	0	0	0	0.03519	1	4477	4477		10.265	0	1	69100	+		58245	24609	40813	40876	63679	63679					0.07507825207949281
PKPGSKPK	8	Unmodified	_PKPGSKPK_					0	0	0		ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.16595458984375	2	419.760895	837.507237	0.30707	0.0001289	2.0237	0.00084946	2.3308	0.00097836	419.7619549002701	22.866	0.70025	22.677	22.42	23.12	-0.18894					16	14	2	0	0	0	0.027866	1	856	856		12.207	4.5166	1	65530			58246	16210	40814	40877	63680	63680					0.08198409968269971
PKPGSKPK	8	Unmodified	_PKPGSKPK_					0	0	0		ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	ENST00000529541.1_1_11:13631944-13632271:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	419.760895	837.507237	1.3953	0.00058568	-0.68028	-0.00028556	0.715	0.00030013	419.7604948828262	23.019	0.27918	22.827	22.617	22.897	-0.19117	0.075947	-0.00054981	NaN	12.207	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89508			58247	16210	40814	40877							0.08198409968269971
PKPKSVVAP	9	Unmodified	_PKPKSVVAP_					0	0	0		nc|ENSG00000103342|P15170|GSPT1;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	nc|ENSG00000103342|P15170|GSPT1	nc|ENSG00000103342|P15170|GSPT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7587890625	2	461.789653	921.564752	-0.98546	-0.00045507	-1.8732	-0.00086501	-2.8586	-0.0013201	461.78890759252687	30.859	0.20385	30.859	30.675	30.879	0					7	4	2	0	0	0	0.024354	1	2015	2015		38.806	31.613	1	46275			58248	2495	40815	40878	63681	63681					0.10083252173853907
PKPLPQQPPA	10	Unmodified	_PKPLPQQPPA_					0	0	0		ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	ENSG00000116128|ENST00000234739|BCL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.27880859375	2	536.811116	1071.60768	-0.52651	-0.00028263	2.2569	0.0012115	1.7304	0.0009289	536.8095241690775	24.708	0.39398	24.533	24.383	24.777	-0.17484					19	8	3	0	0	0	0.03519	1	1099	1099		35.618	0	1	131220			58249	3521	40816	40879	63682	63682					0.07474022231281197
PKPRPWLL	8	Unmodified	_PKPRPWLL_					0	0	0			REV__ENST00000405822.6_1_22:24493985-24509572:+|nuORF	REV__ENST00000405822.6_1_22:24493985-24509572:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2593688964844	2	503.813462	1005.61237	-0.57969	-0.00029206	-3.7872	-0.001908	-4.3669	-0.0022001	503.81151837105267	22.896	0.37037	22.711	22.46	22.831	-0.18539					12	7	3	0	0	0	0.027866	1	844	844		19.36	10.538	1	55512	+		58250	31916	40817	40880	63683	63683					0.10978951164690898
PKPSQSCEDL	10	Unmodified	_PKPSQSCEDL_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.7939453125	2	552.255514	1102.49647	0.12588	6.9517E-05	-3.0234	-0.0016697	-2.8975	-0.0016002	552.2537267180201	42.477	0.35369	42.477	42.289	42.642	0					15	9	2	0	0	0	0.03519	1	3914	3914		29.17	0	1	163470	+		58251	23909	40818	40881	63684	63684					-0.05067405258978397
PKQARSDGSL	10	Unmodified	_PKQARSDGSL_					0	0	0		ENST00000252029.7_1_22:50968091-50968476:-|nuORF	ENST00000252029.7_1_22:50968091-50968476:-|nuORF	ENST00000252029.7_1_22:50968091-50968476:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7965087890625	2	529.783087	1057.55162	-0.69098	-0.00036607	1.1638	0.00061654	0.47278	0.00025047	529.7834448466662	21.973	0.57346	21.782	21.516	22.089	-0.19072					19	11	2	0	0	0	0.03519	1	719	719		9.7057	0	1	113470			58252	11357	40819	40882	63685	63685					0.025147693238068314
PKQEGPLHLQ	10	Unmodified	_PKQEGPLHLQ_					0	0	0		ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.7630004882812	2	573.81693	1145.61931	-0.28432	-0.00016315	4.3867	0.0025171	4.1024	0.002354	573.8195066296712	69.951	0.8294	69.684	69.368	70.198	-0.26724					43	19	3	0	0	0	0.03519	1	8108	8108		24.519	0	1	693120			58253	1944	40820	40883	63686	63686					0.05232219254617121
PKQEKMKMD	9	Unmodified	_PKQEKMKMD_					0	0	0		nc|ENSG00000224586|O75715-2|GPX5;ENSG00000224586|ENST00000412168|GPX5	nc|ENSG00000224586|O75715-2|GPX5	nc|ENSG00000224586|O75715-2|GPX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.785927	1133.5573	0.15447	8.7705E-05	1.069	0.00060695	1.2235	0.00069466	568.2875831246478	91.965	1.1778	91.824	91.442	92.62	-0.14131					34	27	2	0	0	0	0.024374	1	11244	11244		49.442	8.6634	1	194650			58254	10649	40821	40884	63687	63687					-0.004135914803782725
PKQFLISAE	9	Unmodified	_PKQFLISAE_					0	0	0		ENSG00000179841|ENST00000394718|AKAP5	ENSG00000179841|ENST00000394718|AKAP5	ENSG00000179841|ENST00000394718|AKAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3140869140625	2	516.78985	1031.56515	0.27941	0.00014439	2.9332	0.0015158	3.2126	0.0016602	516.7920541411531	97.963	0.20812	97.974	97.897	98.105	0.010231					7	4	2	0	0	0	0.024506	1	12477	12477		10.866	0	1	59599			58255	8928	40822	40885	63688	63688					0.05062627103052364
PKQKTGPAL	9	Unmodified	_PKQKTGPAL_					0	0	0		ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENST00000502426.5_1_17:48736553-48755440:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2845153808594	2	470.284734	938.554916	0.41773	0.00019645	-0.47101	-0.00022151	-0.053274	-2.5054E-05	470.2841549709647	50.979	1.1282	50.979	50.642	51.77	0					68	31	3	0	0	0	0.50848	1	5379	5379		58.782	4.0056	1	2482400			58256	15668	40823	40886	63689	63689					0.08318064168486217
PKQLHLSKL	9	Unmodified	_PKQLHLSKL_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7713623046875	2	532.334759	1062.65496	-1.558	-0.00082939	1.2616	0.00067161	-0.2964	-0.00015779	532.3353129830668	24.56	0.62664	24.513	24.264	24.891	-0.047146					30	13	3	0	0	0	0.024477	1	1085	1085		20.947	0	1	273460	+		58257	22359	40824	40887	63690	63690					0.12614301502276248
PKQQYWTLY	9	Unmodified	_PKQQYWTLY_					0	0	0			REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7	REV__nc|ENSG00000243063|A0A075B6H7|IGKV3-7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.2904052734375	2	613.813856	1225.61316	-1.3152	-0.00080729	0.32314	0.00019835	-0.99207	-0.00060894	613.815618900776	60.852	0.39104	60.676	60.483	60.874	-0.1761					17	9	3	0	0	0	0.023181	1	6772	6772		51.335	9.9088	1	153190	+		58258	37159	40825	40888	63691	63691					0.0093770102309918
PKQRQVLI	8	Unmodified	_PKQRQVLI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.31378173828125	2	491.313826	980.613099	-0.087936	-4.3204E-05	0.13362	6.565E-05	0.045684	2.2445E-05	491.313724639392	21.932	0.5723	21.744	21.483	22.055	-0.18813					32	11	4	0	0	0	0.96719	1	733	733		42.474	7.2737	1	437660			58259	3245	40826	40889	63692	63692					0.1220174581376341
PKQRQVLI	8	Unmodified	_PKQRQVLI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.31365966796875	2	491.313826	980.613099	-1.7806	-0.00087483	1.3066	0.00064193	-0.47403	-0.0002329	491.3143950730784	29.019	0.65093	28.774	28.491	29.142	-0.24523					48	14	4	0	0	0	0.61897	2	1733	1733;1744		74.517	8.6191	1	3257300			58260	3245	40826	40889	63693;63694	63693					0.1220174581376341
PKQRQVLI	8	Unmodified	_PKQRQVLI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.3136901855469	2	491.313826	980.613099	-0.29235	-0.00014364	0.25471	0.00012514	-0.03764	-1.8493E-05	491.3138224843006	22.035	0.62792	21.833	21.566	22.194	-0.20198					36	12	4	0	0	0	0.65272	3	708	708;718;731		71.378	8.3995	1	630390			58261	3245	40826	40889	63695;63696;63697	63695					0.1220174581376341
PKQRQVLI	8	Unmodified	_PKQRQVLI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.31353759765625	2	491.313826	980.613099	-0.21211	-0.00010421	-0.45565	-0.00022387	-0.66776	-0.00032808	491.31354885555015	28.954	0.68424	28.805	28.529	29.213	-0.14952					46	15	4	0	0	0	0.75307	1	1725	1725		62.978	2.6845	1	4062400			58262	3245	40826	40889	63698	63698					0.1220174581376341
PKQRQVLI	8	Unmodified	_PKQRQVLI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	491.313826	980.613099	-0.34042	-0.00016725	-0.25759	-0.00012656	-0.598	-0.00029381	491.31365385430496	28.917	0.77912	28.748	28.38	29.16	-0.16897	-0.027556	-0.00040153	NaN	74.517	53	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3476000			58263	3245	40826	40889							0.1220174581376341
PKQSYPDRSG	10	Unmodified	_PKQSYPDRSG_					0	0	0		ENST00000392894.7_1_3:149679327-149679453:+|nuORF	ENST00000392894.7_1_3:149679327-149679453:+|nuORF	ENST00000392894.7_1_3:149679327-149679453:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	567.7824096679688	2	567.780544	1133.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.472	1	17.329	16.829	17.829	-0.14278								0	0	0	0.75822	1	162	162		25.574	1.3713	1				58264	13432	40827	40890	63699	63699					-0.014895345388140413
PKQTIKKTK	9	Unmodified	_PKQTIKKTK_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENST00000485019.1_1_1:235323532-235324526:-|nuORF;ENST00000486751.5_1_1:235323638-235324580:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2586669921875	2	536.347866	1070.68118	-0.96436	-0.00051723	4.2102	0.0022582	3.2459	0.0017409	536.3499215217871	53.152	0.58752	53.004	52.758	53.346	-0.14724					38	15	3	0	0	0	0.024447	1	5762	5762		25.574	5.5773	1	455000			58265	9744	40828	40891	63700	63700					0.14866570673734714
PKRAAGGPS	9	Unmodified	_PKRAAGGPS_					0	0	0		ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.73797607421875	2	420.737951	839.46135	-0.57446	-0.0002417	0.95005	0.00039972	0.37558	0.00015802	420.7382079879274	26.729	0.67239	26.81	26.499	27.171	0.081291					37	16	3	0	0	0	0.96906	1	1346	1346		26.693	1.2427	1	1209600			58266	11282	40829	40892	63701	63701					0.035197647860513825
PKRAAGGPS	9	Unmodified	_PKRAAGGPS_					0	0	0		ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	420.737951	839.46135	-0.22975	-9.6664E-05	0.65597	0.00027599	0.42622	0.00017933	420.73805417510755	27.071	0.58165	27.071	26.741	27.323	0	0.11925	-0.00013882	NaN	26.693	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1294800			58267	11282	40829	40892							0.035197647860513825
PKRAAGGPS	9	Unmodified	_PKRAAGGPS_					0	0	0		ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	420.737951	839.46135	-0.35682	-0.00015013	0.89584	0.00037691	0.53902	0.00022679	420.73812885178495	26.986	0.53208	26.973	26.745	27.277	-0.012983	0.021841	6.3024E-05	NaN	26.693	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1323900			58268	11282	40829	40892							0.035197647860513825
PKRATPSP	8	Unmodified	_PKRATPSP_					0	0	0		ENSG00000121297|ENST00000240587|TSHZ3	ENSG00000121297|ENST00000240587|TSHZ3	ENSG00000121297|ENST00000240587|TSHZ3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2712707519531	2	427.248152	852.481751	-0.52469	-0.00022417	2.0132	0.00086014	1.4885	0.00063596	427.2490099723167	39.584	0.55895	39.607	39.349	39.908	0.023727					32	15	3	0	0	0	0.027866	1	3378	3378		17.365	0	1	197170			58269	3861	40830	40893	63702	63702					0.049609354458425514
PKRDGFIQP	9	Unmodified	_PKRDGFIQP_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.241455078125	2	529.293091	1056.57163	-1.0277	-0.00054398	1.9608	0.0010378	0.93302	0.00049384	529.795753289157	43.558	0.97241	43.414	43.021	43.994	-0.14471					44	26	3	0	0	0	0.024397	1	4144	4144		31.53	6.0796	1	513210	+		58270	20938	40831	40894	63703	63703					0.04560565054430299
PKREIPAE	8	Unmodified	_PKREIPAE_					0	0	0		ENST00000463543.5_1_1:151143496-151146942:-|nuORF;ENSG00000163157|ENST00000295314|TMOD4	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2618103027344	2	470.266542	938.51853	0.011341	5.3334E-06	-0.018108	-8.5157E-06	-0.006767	-3.1823E-06	470.26652847980245	33.511	0.36216	33.28	33.153	33.516	-0.23107					13	8	2	0	0	0	0.027866	1	2384	2384		33.516	5.6333	1	942750			58271	7044	40832	40895	63704	63704					0.0468118727176261
PKREKASKKQ	10	Unmodified	_PKREKASKKQ_					0	0	0			REV__ENSG00000163394|ENST00000295589|CCKAR	REV__ENSG00000163394|ENST00000295589|CCKAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.58026123046875	3	400.578811	1198.7146	0.22062	8.8377E-05	4.2825	0.0017155	4.5031	0.0018039	400.5803938216271	111.35	0.20173	111.2	111.11	111.31	-0.1469					15	7	3	0	0	0	1.1165	1	13587	13587		19.263	2.5453	1	322990	+		58272	25562	40833	40896	63705	63705					0.12319572445653648
PKREKKSFIT	10	Unmodified	_PKREKKSFIT_					0	0	0			REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	REV__nc|ENSG00000230246|P0DKV0|SPATA31C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.2307434082031	3	411.915312	1232.72411	0.34861	0.0001436	-3.6744	-0.0015135	-3.3258	-0.0013699	412.2477637694487	27.632	0.78354	27.632	27.179	27.963	0					25	20	2	0	0	0	0.03519	1	1520	1520		20.03	0	1	373170	+		58273	36975	40834	40897	63706	63706					0.1170534073116869
PKRGAKPI	8	Unmodified	_PKRGAKPI_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7796630859375	2	433.782162	865.549771	0.12645	5.4853E-05	-0.55375	-0.00024021	-0.42729	-0.00018535	433.78184586179503	48.746	0.50684	48.564	48.339	48.845	-0.18206					19	13	2	0	0	0	0.027866	1	4848	4848		13.775	0	1	138930	+		58274	20709	40835	40898	63707	63707					0.11161805096514854
PKRGLAPK	8	Unmodified	_PKRGLAPK_					0	0	0		ENSG00000184619|ENST00000396267|KRBA2;nc|ENSG00000184619|Q6ZNG9|KRBA2	ENSG00000184619|ENST00000396267|KRBA2	ENSG00000184619|ENST00000396267|KRBA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.74786376953125	2	433.782162	865.549771	-0.059282	-2.5715E-05	0.21233	9.2104E-05	0.15305	6.6388E-05	433.7820585572456	32.874	0.44164	32.708	32.556	32.998	-0.16565					13	10	2	0	0	0	0.027866	1	2286	2286		7.6903	0	1	101150			58275	9357	40836	40899	63708	63708					0.11161805096503485
PKRHLGKLL	9	Unmodified	_PKRHLGKLL_					0	0	0			REV__ENST00000265022.7_1_3:186038300-186038426:-|nuORF	REV__ENST00000265022.7_1_3:186038300-186038426:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8025512695312	2	531.350743	1060.68693	-0.48135	-0.00025577	2.5474	0.0013536	2.0661	0.0010978	531.3517529611455	79.682	0.66331	79.703	79.316	79.979	0.02108					24	15	2	0	0	0	0.024523	1	9764	9764		21.96	3.6355	1	61937	+		58276	29730	40837	40900	63709	63709					0.15901713976086285
PKRHSLVF	8	Unmodified	_PKRHSLVF_					0	0	0			REV__ENST00000330964.9_1_15:63446154-63446214:-|nuORF	REV__ENST00000330964.9_1_15:63446154-63446214:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.29254150390625	2	492.292894	982.571235	-0.37791	-0.00018604	-3.9003	-0.0019201	-4.2782	-0.0021061	492.29083450146464	22.933	0.46128	22.747	22.554	23.015	-0.18539					18	9	2	0	0	0	1.0574	1	851	851		24.203	5.8783	1	338230	+		58277	30469	40838	40901	63710	63710					0.07925190125229165
PKRIKQTS	8	Unmodified	_PKRIKQTS_					0	0	0			REV__SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|55|1|anti-sense	REV__SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|55|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.30596923828125	2	479.295633	956.576714	1.1177	0.00053573	-4.0648	-0.0019482	-2.9471	-0.0014125	479.29367676490335	18.565	0.34659	18.409	18.297	18.643	-0.15637					9	6	2	0	0	0	0.027866	1	325	325		17.365	0	1	46827	+		58278	37592	40839	40902	63711	63711					0.09668868917037798
PKRISPEES	9	Unmodified	_PKRISPEES_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7645874023438	2	521.780013	1041.54547	-0.58879	-0.00030722	3.3408	0.0017432	2.752	0.001436	522.2813701854616	35.573	0.44115	35.617	35.42	35.861	0.044056					26	10	3	0	0	0	0.024261	1	2725	2725		45.972	11.8	1	262240	+		58279	25929	40840	40903	63712	63712					0.026362510922808724
PKRKLDVT	8	Unmodified	_PKRKLDVT_					0	0	0			REV__ENSG00000169504|ENST00000374379|CLIC4;REV__nc|ENSG00000159212|Q96NY7|CLIC6	REV__nc|ENSG00000159212|Q96NY7|CLIC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.76055908203125	2	478.798009	955.581465	0.30303	0.00014509	-1.13	-0.00054102	-0.82692	-0.00039593	478.7972852559367	34.133	0.93047	34.133	33.855	34.785	0					50	23	4	0	0	0	0.027866	1	2501	2501		25.45	0	1	903610	+		58280	36823;26373	40841	40904	63713	63713					0.10189753059808027
PKRKRTQIGE	10	Unmodified	_PKRKRTQIGE_					0	0	0			REV__nc|ENSG00000141448|Q92908-2|GATA6	REV__nc|ENSG00000141448|Q92908-2|GATA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9229431152344	3	404.910561	1211.70985	0.49808	0.00020168	-1.3629	-0.00055184	-0.8648	-0.00035017	404.9102903474417	26.608	0.21071	26.44	26.339	26.55	-0.16816					5	4	2	0	0	0	0.03519	1	1383	1383		31.634	12.372	1	47355	+		58281	24089	40842	40905	63714	63714					0.11246688302912844
PKRLHPLPS	9	Unmodified	_PKRLHPLPS_					0	0	0			REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2634887695312	2	522.819276	1043.624	-0.23176	-0.00012117	-1.632	-0.00085325	-1.8638	-0.00097442	522.8181822477858	53.772	0.51454	53.575	53.312	53.827	-0.19739					38	15	3	0	0	0	0.024523	1	5698	5698		21.96	5.4867	1	1658200	+		58282	32977	40843	40906	63715	63715					0.10393148188040868
PKRLHPLPS	9	Unmodified	_PKRLHPLPS_					0	0	0			REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	522.819276	1043.624	-0.50736	-0.00026526	-0.72859	-0.00038092	-1.236	-0.00064618	522.8187647033096	53.686	0.4323	53.686	53.474	53.907	0	0.016367	0.0002695	NaN	21.96	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1395000	+		58283	32977	40843	40906							0.10393148188040868
PKRLHPLPS	9	Unmodified	_PKRLHPLPS_					0	0	0			REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.819276	1043.624	-0.16097	-8.4159E-05	6.3577	0.0033239	6.1967	0.0032398	523.3237976106907	54.108	0.16555	53.96	53.855	54.02	-0.14723	0.29058	0.0076792	NaN	21.96	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36141	+		58284	32977	40843	40906							0.10393148188040868
PKRLHPLPS	9	Unmodified	_PKRLHPLPS_					0	0	0			REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.819276	1043.624	-0.66389	-0.00034709	-0.011902	-6.2226E-06	-0.67579	-0.00035332	522.8194134604264	53.533	0.46728	53.629	53.407	53.874	0.095669	-0.040664	0.0010189	NaN	21.96	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1048700	+		58285	32977	40843	40906							0.10393148188040868
PKRNASHV	8	Unmodified	_PKRNASHV_					0	0	0		chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7567443847656	2	454.756675	907.498798	-0.21534	-9.7926E-05	0.27869	0.00012674	0.063356	2.8812E-05	454.7566972806744	21.433	1.0079	21.343	21.059	22.067	-0.090092					43	20	3	0	0	0	0.99042	1	653	653		38.806	6.8513	1	321520			58286	390	40844	40907	63716	63716					0.041348560516553334
PKRPIINTPVV	11	Unmodified	_PKRPIINTPVV_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5632629394531	3	411.92744	1232.76049	0.023483	9.6735E-06	-2.3558	-0.00097041	-2.3323	-0.00096074	412.26108242255685	32.515	0.53845	32.278	32.042	32.581	-0.23666					23	12	3	0	0	0	0.024734	1	2242	2242		34.087	16.253	1	164370			58287	247	40845	40908	63717	63717					0.15342217627880927
PKRPIINTPVV	11	Unmodified	_PKRPIINTPVV_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.5633239746094	3	411.92744	1232.76049	0.51217	0.00021098	-3.7135	-0.0015297	-3.2013	-0.0013187	411.92565023136353	32.599	0.70101	32.407	32.162	32.863	-0.19261					27	16	3	0	0	0	0.024746	1	2253	2253		26.75	10.743	1	169160			58288	247	40845	40908	63718	63718					0.15342217627880927
PKRPKAAG	8	Unmodified	_PKRPKAAG_					0	0	0			REV__ENSG00000124575|ENST00000244534|H1-3	REV__ENSG00000124575|ENST00000244534|H1-3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.746337890625	2	412.758687	823.502821	0.5453	0.00022508	-3.9622	-0.0016354	-3.4169	-0.0014103	412.75740743527393	84.532	0.54916	84.329	84.081	84.63	-0.20329					15	12	2	0	0	0	0.027866	1	10187	10187		1.3276	0	1	42616	+		58289	22775	40846	40909	63719	63719					0.08400945545372451
PKRPKAAG	8	Unmodified	_PKRPKAAG_					0	0	0			REV__ENSG00000124575|ENST00000244534|H1-3	REV__ENSG00000124575|ENST00000244534|H1-3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	412.758687	823.502821	-0.23768	-9.8105E-05	-6.0282	-0.0024882	-6.2658	-0.0025863	412.75575327529276	84.549	0.32719	84.476	84.221	84.548	-0.072769	0.073789	-0.00085468	NaN	1.3276	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81652	+		58290	22775	40846	40909							0.08400945545372451
PKRRRMYLER	10	Unmodified	_PKRRRMYLER_					0	0	0			REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.2889099121094	3	468.938345	1403.79321	-0.77603	-0.00036391	-0.55393	-0.00025976	-1.33	-0.00062367	468.93817474087854	48.783	0.4467	48.682	48.471	48.918	-0.1008					16	11	2	0	0	0	0.03519	1	4849	4849		6.001	0	1	105910	+		58291	34122	40847	40910	63720	63720					0.1074610147909425
PKRRRSLV	8	Unmodified	_PKRRRSLV_					0	0	0		ENST00000358465.6_1_1:114948043-114948136:-|nuORF	ENST00000358465.6_1_1:114948043-114948136:-|nuORF	ENST00000358465.6_1_1:114948043-114948136:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7142028808594	2	506.330342	1010.64613	-0.41139	-0.0002083	3.0362	0.0015373	2.6248	0.001329	506.3317523044951	34.691	0.32225	34.484	34.326	34.648	-0.20695					14	7	2	0	0	0	0.027866	1	2556	2556		8.2313	0	1	97300			58292	12717	40848	40911	63721	63721					0.14123372656456468
PKRRRTTV	8	Unmodified	_PKRRRTTV_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3023986816406	2	507.319974	1012.6254	-0.63978	-0.00032457	3.3307	0.0016898	2.691	0.0013652	507.3214716220066	56.439	0.36537	56.275	56.094	56.459	-0.16431					14	9	2	0	0	0	0.027866	1	6255	6255		26.693	0	1	133900	+		58293	30348	40849	40912	63722	63722					0.1195878227679259
PKRSRARA	8	Unmodified	_PKRSRARA_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.8016357421875	2	471.291217	940.567881	0.75724	0.00035688	1.8947	0.00089295	2.6519	0.0012498	471.2918828646832	50.914	0.26115	50.803	50.712	50.973	-0.11163					13	6	3	0	0	0	0.027866	1	5227	5227		10.866	0	1	441080	+		58294	25411	40850	40913	63723	63723					0.09521940071226709
PKRTSYEWYIP	11	Unmodified	_PKRTSYEWYIP_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2693786621094	3	480.58211	1438.7245	-0.59975	-0.00028823	-3.8497	-0.0018501	-4.4494	-0.0021383	480.57986247554106	30.949	0.3687	30.77	30.583	30.952	-0.17818					20	8	3	0	0	0	0.024748	1	2002	2002		24.232	0	1	94569			58295	7835	40851	40914	63724	63724					0.022687156603751646
PKSATAHII	9	Unmodified	_PKSATAHII_					0	0	0		nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2618103027344	2	469.276909	936.539266	-0.062211	-2.9194E-05	-0.86405	-0.00040548	-0.92626	-0.00043467	469.2765045695784	33.19	0.52079	32.959	32.752	33.273	-0.23107					19	12	3	0	0	0	0.024381	1	2384	2384		21.96	0	1	69546			58296	734	40852	40915	63725	63725					0.06845777651415119
PKSCCLISCF	10	Unmodified	_PKSCCLISCF_					0	0	0		ENST00000348405.8_1_4:83788380-83788437:-|nuORF	ENST00000348405.8_1_4:83788380-83788437:-|nuORF	ENST00000348405.8_1_4:83788380-83788437:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.751708984375	2	550.750498	1099.48644	1.4385	0.00079223	-3.571	-0.0019667	-2.1326	-0.0011745	550.7484509256552	16.699	0.20678	16.545	16.449	16.656	-0.15376					6	4	2	0	0	0	1.1197	1	98	98		20.947	0.4651	1	15294			58297	12582	40853	40916	63726	63726					-0.05932007789556337
PKSEILKMN	9	Unmodified	_PKSEILKMN_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2556762695312	2	530.296985	1058.57942	-0.85345	-0.00045258	-2.0842	-0.0011052	-2.9376	-0.0015578	530.2941256689578	28.76	0.20827	28.756	28.624	28.832	-0.0042019					6	4	2	0	0	0	0.024397	1	1695	1695		39.253	8.7492	1	22971	+		58298	20082	40854	40917	63727	63727					0.05246956259702529
PKSEPIRVL	9	Unmodified	_PKSEPIRVL_					0	0	0		EHBP1-MDH1|1|fusion;EHBP1-MDH1|2|fusion	EHBP1-MDH1|1|fusion	EHBP1-MDH1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8187255859375	2	519.818941	1037.62333	0.12518	6.5073E-05	-0.67539	-0.00035108	-0.55021	-0.00028601	519.8186456583804	71.282	0.99471	71.282	70.909	71.904	0					100	25	5	0	0	0	0.62163	1	8648	8648		51.335	0	1	28736000			58299	687	40855	40918	63728	63728					0.10602308748320866
PKSEQVYL	8	Unmodified	_PKSEQVYL_					0	0	0		ENSG00000167840|ENST00000250076|ZNF232;ENST00000574735.1_1_17:5009121-5012368:-|nuORF	ENSG00000167840|ENST00000250076|ZNF232	ENSG00000167840|ENST00000250076|ZNF232	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2608947753906	2	482.260925	962.507297	0.27703	0.0001336	0.3803	0.0001834	0.65733	0.000317	482.2609708296094	66.437	1.2662	66.437	66.224	67.49	0					57	35	3	0	0	0	0.53593	1	7916	7916		82.241	8.2658	1	3901000			58300	7742	40856	40919	63729	63729					0.02454365177618456
PKSFKFLP	8	Unmodified	_PKSFKFLP_					0	0	0		ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	ENSG00000112218|ENST00000229955|GPR63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2546691894531	2	482.286746	962.558939	-0.58719	-0.00028319	-3.7904	-0.0018281	-4.3776	-0.0021113	482.2841463916418	30.922	0.3321	30.744	30.54	30.872	-0.17817					11	7	2	0	0	0	0.027866	1	1990	1990		27.882	0	1	59774			58301	3184	40857	40920	63730	63730					0.07616153662183933
PKSLRIAR	8	Unmodified	_PKSLRIAR_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.79095458984375	2	470.806168	939.597784	-0.15653	-7.3697E-05	0.17452	8.2166E-05	0.017988	8.4688E-06	470.8060285895931	25.902	0.34866	25.902	25.694	26.043	0					10	7	2	0	0	0	0.027866	1	1245	1245		27.882	11.409	1	22589			58302	2480	40858	40921	63731	63731					0.12556879016551648
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.2564392089844	2	433.253769	864.492984	0.12022	5.2087E-05	1.4036	0.00060812	1.5238	0.0006602	433.25470038338943	97.693	0.56615	97.693	97.415	97.981	0					32	12	3	0	0	0	1.0239	1	12468	12468		33.516	1.5607	1	333360	+		58303	26450	40859	40922	63732	63732					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.25531005859375	2	433.253769	864.492984	0.082102	3.5571E-05	1.561	0.00067629	1.6431	0.00071187	433.25533421616046	102.79	2.2075	102.8	102.41	104.62	0.0054245					176	55	6	0	0	0	0.96719	5	13185	13112;13185;13197;13222;13244		42.474	5.446	1	219000000	+		58304	26450	40859	40922	63733;63734;63735;63736;63737	63734					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.2559509277344	2	433.253769	864.492984	0.5502	0.00023838	2.408	0.0010433	2.9582	0.0012816	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	0.93274	6	13073	13073;13157;13169;13180;13193;13226		47.916	5.4411	1	237570000	+		58305	26450	40859	40922	63738;63739;63740;63741;63742;63743	63738					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.25653076171875	2	433.253769	864.492984	0.96868	0.00041968	1.4757	0.00063936	2.4444	0.001059	433.2542395838256	97.807	0.60489	97.67	97.285	97.89	-0.1367					28	13	3	0	0	0	0.93274	1	12106	12106		47.916	3.3845	1	263060	+		58306	26450	40859	40922	63744	63744					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.25518798828125	2	433.253769	864.492984	0.068768	2.9794E-05	2.9354	0.0012718	3.0042	0.0013016	433.25539260258705	102.94	2.6221	102.81	102.45	105.08	-0.12783					130	72	2	0	0	0	0.93274	5	12773	12773;12785;12797;12866;12920		47.916	5.446	1	236480000	+		58307	26450	40859	40922	63745;63746;63747;63748;63749	63745					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.25567626953125	2	433.253769	864.492984	0.26876	0.00011644	2.0236	0.00087673	2.2924	0.00099317	433.25445370024414	97.887	0.49548	97.722	97.442	97.938	-0.1652					20	11	2	0	0	0	1.0572	1	12105	12105		28.254	1.4582	1	243420	+		58308	26450	40859	40922	63750	63750					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2554931640625	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.79	1	102.62	102.12	103.12	-0.17034								0	0	0	0.68408	1	12760	12760		42.474	5.446	1		+		58309	26450	40859	40922	63751	63751					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2550354003906	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.88	1	102.71	102.21	103.21	-0.17034								0	0	0	0.68408	1	12772	12772		42.474	5.446	1		+		58310	26450	40859	40922	63752	63752					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2551574707031	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.2	1	103.03	102.53	103.53	-0.17034								0	0	0	0.68408	1	12820	12820		42.474	5.446	1		+		58311	26450	40859	40922	63753	63753					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MSMS	OPSCC_40_ClassI_Rep-3	6	433.25482177734375	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.28	1	103.11	102.61	103.61	-0.17034								0	0	0	0.54229	1	12831	12831		52.299	15.271	1		+		58312	26450	40859	40922	63754	63754					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2554626464844	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.69	1	103.53	103.03	104.03	-0.16791								0	0	0	0.60555	1	12884	12884		47.916	3.3845	1		+		58313	26450	40859	40922	63755	63755					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2560119628906	2	433.253769	864.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.85	1	103.69	103.19	104.19	-0.16791								0	0	0	0.68408	1	12905	12905		42.474	7.2737	1		+		58314	26450	40859	40922	63756	63756					0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	433.253769	864.492984	0.12022	5.2087E-05	1.4036	0.00060812	1.5238	0.0006602	433.25470038338943	97.693	0.56615	97.693	97.415	97.981	0	0.0041549	-9.5444E-05	NaN	47.916	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333360	+		58315	26450	40859	40922							0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	433.253769	864.492984	1.1575	0.00050148	1.3016	0.0005639	2.459	0.0010654	433.2542473889787	97.745	0.60248	97.742	97.412	98.014	-0.0020828	0.053749	-0.00018387	NaN	47.916	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272320	+		58316	26450	40859	40922							0.05531757539984028
PKSRAGHL	8	Unmodified	_PKSRAGHL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	433.253769	864.492984	0.26876	0.00011644	2.0236	0.00087673	2.2924	0.00099317	433.25445370024414	97.887	0.49548	97.722	97.442	97.938	-0.1652	0.032826	0.00044179	NaN	47.916	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243420	+		58317	26450	40859	40922							0.05531757539984028
PKSRAGHLL	9	Unmodified	_PKSRAGHLL_					0	0	0			REV__ENSG00000170265|ENST00000610704|ZNF282	REV__ENSG00000170265|ENST00000610704|ZNF282	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7956237792969	2	489.795801	977.577048	-0.40834	-0.0002	0.26521	0.0001299	-0.14313	-7.0104E-05	489.795828692075	22.129	0.79776	22.129	21.868	22.665	0					46	16	4	0	0	0	0.80003	1	758	758		39.253	0.23134	1	1269600	+		58318	26450	40860	40923	63757	63757					0.08736288636896461
PKSRNIVF	8	Unmodified	_PKSRNIVF_					0	0	0			REV__nc|ENSG00000254402|Q50LG9|LRRC24	REV__nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.26922607421875	2	480.784902	959.55525	0.11218	5.3934E-05	0.23234	0.00011171	0.34452	0.00016564	480.78514587960876	30.699	0.54745	30.549	30.301	30.849	-0.14952					15	12	2	0	0	0	0.027866	1	2002	2002		65.803	5.5092	1	75346	+		58319	37171	40861	40924	63758	63758					0.0738548388833351
PKSSFYSP	8	Unmodified	_PKSSFYSP_					0	0	0		ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.726718	911.438883	-0.25234	-0.00011525	-4.3166	-0.0019715	-4.5689	-0.0020868	456.7253674828745	23.109	0.17945	23.049	22.889	23.069	-0.060862					6	3	2	0	0	0	0.027866	1	865	865		66.429	0.96389	1	38199			58320	11095	40862	40925	63759	63759					-0.02037879402234921
PKSSFYSP	8	Unmodified	_PKSSFYSP_					0	0	0		ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7663879394531	2	456.726718	911.438883	-0.32116	-0.00014668	-2.1156	-0.00096623	-2.4367	-0.0011129	456.7258729027462	23.094	0.47179	23.17	22.84	23.312	0.076239					19	10	3	0	0	0	0.027866	1	814	814		55.504	0.72789	1	41782			58321	11095	40862	40925	63760	63760					-0.02037879402234921
PKSVAIRVN	9	Unmodified	_PKSVAIRVN_					0	0	0			REV__ENST00000480030.1_1_19:40875835-40876255:+|nuORF	REV__ENST00000480030.1_1_19:40875835-40876255:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.30426025390625	2	492.303458	982.592364	0.25207	0.0001241	-2.3029	-0.0011337	-2.0508	-0.0010096	492.30109030195655	58.582	1.3135	58.673	58.118	59.432	0.091217					60	35	2	0	0	0	0.024374	1	6678	6678		58.782	14.665	1	2488600	+		58322	21501	40863	40926	63761	63761					0.10037155434088163
PKSVGLAGRPS	11	Unmodified	_PKSVGLAGRPS_					0	0	0		nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENST00000554514.1_1_14:21549058-21555515:+|nuORF	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.811767578125	2	534.811648	1067.60874	-0.21716	-0.00011614	0.15779	8.4386E-05	-0.05937	-3.1752E-05	534.8115704272966	32.257	1.049	32.02	31.74	32.789	-0.23666					41	24	3	0	0	0	0.849	1	2212	2212		54.722	3.3869	1	995780			58323	18469	40864	40927	63762	63762					0.07764236600178265
PKSVKGLH	8	Unmodified	_PKSVKGLH_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.25537109375	2	433.266345	864.518136	0.48254	0.00020907	2.0033	0.00086798	2.4859	0.0010771	433.2670202250639	103.15	0.33536	103.02	102.94	103.28	-0.12724					12	7	2	0	0	0	0.027866	1	12813	12813		57.811	15.337	1	74248	+		58324	27307	40865	40928	63763	63763					0.08045812342561476
PKTAHDPI	8	Unmodified	_PKTAHDPI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.75653076171875	2	439.74016	877.465767	0.57674	0.00025362	0.46075	0.00020261	1.0375	0.00045623	439.74021819802863	41.128	0.56949	41.005	40.725	41.294	-0.12317					26	15	2	0	0	0	0.027866	1	3664	3664		38.806	0	1	219560			58325	6479	40866	40929	63764	63764					0.022132292089509065
PKTAHDPI	8	Unmodified	_PKTAHDPI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7566833496094	2	439.74016	877.465767	0.18461	8.118E-05	0.27343	0.00012024	0.45804	0.00020142	439.7400484248583	41.152	0.59965	41.175	40.864	41.464	0.023006					23	16	2	0	0	0	0.027866	1	3619	3619		55.504	7.5886	1	206800			58326	6479	40866	40929	63765	63765					0.022132292089509065
PKTCDIVI	8	Unmodified	_PKTCDIVI_					0	0	0		ENSG00000147912|ENST00000432825|FBXO10	ENSG00000147912|ENST00000432825|FBXO10	ENSG00000147912|ENST00000432825|FBXO10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.24542236328125	2	444.746596	887.478639	-0.11676	-5.1929E-05	0.025466	1.1326E-05	-0.091295	-4.0603E-05	444.74728466140266	102.9	0.5583	102.77	102.23	102.79	-0.12783					18	12	2	0	0	0	0.027866	1	12798	12798		42.474	6.8562	1	3892300			58327	6000	40867	40930	63766	63766					0.03039924276822603
PKTGKKGK	8	Unmodified	_PKTGKKGK_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71;nc|ENSG00000177354|Q711Q0-3|CEFIP	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.2583312988281	2	422.27417	842.533787	-0.40251	-0.00016997	0.033881	1.4307E-05	-0.36863	-0.00015566	422.2741833532236	27.049	0.42313	26.807	26.571	26.995	-0.24217					14	9	2	0	0	0	0.027866	1	1488	1488		25.45	18.257	1	70684			58328	8730	40868	40931	63767	63767					0.106220988596192
PKTGKKGK	8	Unmodified	_PKTGKKGK_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71;nc|ENSG00000177354|Q711Q0-3|CEFIP	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.27417	842.533787	-0.15799	-6.6713E-05	0.38032	0.0001606	0.22234	9.3887E-05	422.2741329124212	26.769	0.389	26.601	26.42	26.809	-0.16816	-0.10317	6.0994E-05	NaN	25.45	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54669			58329	8730	40868	40931							0.106220988596192
PKTILRKYSV	10	Unmodified	_PKTILRKYSV_					0	0	0		ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	602.8746337890625	2	602.874248	1203.73394	-0.38508	-0.00023216	0.27028	0.00016295	-0.1148	-6.9209E-05	602.8742817469405	64.068	0.72299	63.817	63.518	64.241	-0.25141					55	19	4	0	0	0	0.78438	1	7491	7491		61.691	8.3398	1	2693300			58330	12000	40869	40932	63768	63768					0.14022528736541062
PKTILRKYSV	10	Unmodified	_PKTILRKYSV_					0	0	0		ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	602.874248	1203.73394	0.13798	8.3183E-05	-0.015482	-9.3336E-06	0.1225	7.3849E-05	602.8741102944784	63.75	0.82672	63.75	63.485	64.311	0	-0.046748	0.00015147	NaN	61.691	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2488800			58331	12000	40869	40932							0.14022528736541062
PKTKDIQIN	9	Unmodified	_PKTKDIQIN_					0	0	0			REV__GALK2-C15orf43|2|fusion	REV__GALK2-C15orf43|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.8056640625	2	528.806031	1055.59751	-0.92167	-0.00048738	0.60212	0.00031841	-0.31955	-0.00016898	528.8063510162544	54.162	0.82147	54.162	53.835	54.656	0					61	23	4	0	0	0	0.45795	1	5901	5901		62.107	1.9892	1	5689400	+		58332	25101	40870	40933	63769	63769					0.07193414506036788
PKTNIDGLVMI	11	Unmodified	_PKTNIDGLVMI_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2229309082031	3	400.893408	1199.65839	0.26919	0.00010792	-0.71683	-0.00028737	-0.44764	-0.00017946	400.89186003094284	31.739	0.92165	31.75	31.299	32.221	0.011797					79	22	6	0	0	0	0.024723	1	2159	2159		22.562	8.4756	1	471830	+		58333	20289	40871	40934	63770	63770					0.0665518349399008
PKTNIDGLVMI	11	Unmodified	_PKTNIDGLVMI_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	400.893408	1199.65839	0.89742	0.00035977	-1.0103	-0.00040501	-0.11285	-4.524E-05	400.8916421514981	31.827	0.98769	31.827	31.469	32.457	0	0.038468	-0.00016246	NaN	22.562	82	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591280	+		58334	20289	40871	40934							0.0665518349399008
PKTNRLHI	8	Unmodified	_PKTNRLHI_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7918395996094	2	489.795801	977.577048	-1.4057	-0.00068851	1.3076	0.00064047	-0.09807	-4.8034E-05	489.7963349901037	22.074	1.1454	22.148	21.832	22.978	0.073954					55	23	4	0	0	0	0.93274	1	690	690		47.916	0	1	982240			58335	689	40872	40935	63771	63771					0.08736288636896461
PKTPDPPDI	9	Unmodified	_PKTPDPPDI_					0	0	0			REV__ENSG00000076984|ENST00000397979|MAP2K7	REV__ENSG00000076984|ENST00000397979|MAP2K7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25921630859375	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.67687	1	13505	13505		47.657	1.6851	1	6674100	+		58336	20577	40873	40936	63772	63772					0.012100613149868877
PKTRRLLF	8	Unmodified	_PKTRRLLF_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2608032226562	2	515.829643	1029.64473	-1.4971	-0.00077223	2.1679	0.0011183	0.6708	0.00034602	516.3329883304214	30.068	0.20082	30.068	29.936	30.137	0					6	4	2	0	0	0	0.027866	1	1901	1901		24.203	4.8428	1	33542	+		58337	28441	40874	40937	63773	63773					0.1310973856768669
PKTSPVPKVTI	11	Unmodified	_PKTSPVPKVTI_					0	0	0		nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN;nc|ENSG00000130518|Q9H0B3-5|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.8590698242188	2	583.860806	1165.70706	-1.4127	-0.00082485	-1.8817	-0.0010987	-3.2945	-0.0019235	583.8595208920531	97.016	1.112	97.016	96.615	97.727	0					84	24	5	0	0	0	1.013	1	12413	12413		33.922	1.1092	1	1406200			58338	4426	40875	40938	63774	63774					0.13083420125371958
PKVAKVKNKA	10	Unmodified	_PKVAKVKNKA_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7985229492188	2	541.855858	1081.69716	0.061592	3.3374E-05	-0.19361	-0.00010491	-0.13202	-7.1537E-05	541.8556269436317	32.703	1.1776	32.51	31.685	32.863	-0.19261					64	27	3	0	0	0	0.03519	1	2173	2173		14.865	0.72775	1	690920			58339	2313	40876	40939	63775	63775					0.15958276910646418
PKVAKVKNKA	10	Unmodified	_PKVAKVKNKA_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	541.855858	1081.69716	-1.103	-0.00059768	0.59596	0.00032293	-0.50705	-0.00027475	541.8559585594929	32.731	1.1079	32.731	31.91	33.018	0	0.1965	0.00024117	NaN	14.865	54	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504890			58340	2313	40876	40939							0.15958276910646418
PKVAKVKNKA	10	Unmodified	_PKVAKVKNKA_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	541.855858	1081.69716	-1.1298	-0.00061217	0.60262	0.00032653	-0.52714	-0.00028563	541.8560230397487	32.589	1.025	32.601	32.023	33.048	0.011795	0.066535	0.00024838	NaN	14.865	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395370			58341	2313	40876	40939							0.15958276910646418
PKVAKVKNKA	10	Unmodified	_PKVAKVKNKA_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	541.855858	1081.69716	-0.87388	-0.00047352	0.37039	0.0002007	-0.50349	-0.00027282	541.8558748552654	32.451	1.1145	32.514	31.961	33.076	0.062885	-0.020164	-3.2952E-06	NaN	14.865	55	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394960			58342	2313	40876	40939							0.15958276910646418
PKVGETAPGFV	11	Unmodified	_PKVGETAPGFV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.3002319335938	2	551.300581	1100.58661	-0.87603	-0.00048296	-0.69822	-0.00038493	-1.5743	-0.00086789	551.3001695358757	26.449	1.9312	26.426	25.091	27.022	-0.023088					128	46	5	0	0	0	0.95124	1	1359	1359		47.657	1.6851	1	4290100			58343	6479;18400	40877	40940	63776	63776					0.04034012131751297
PKVGFYDK	8	Unmodified	_PKVGFYDK_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77215576171875	2	477.258185	952.501818	-0.72991	-0.00034836	-3.4113	-0.0016281	-4.1412	-0.0019764	477.2565516281397	35.746	0.591	35.704	35.405	35.996	-0.042458					36	15	3	0	0	0	0.027866	1	2774	2774		23.042	0	1	471830			58344	2354	40878	40941	63777	63777					0.02366686385801131
PKVINSLLA	9	Unmodified	_PKVINSLLA_					0	0	0			REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.777587890625	2	477.80276	953.590967	-0.89802	-0.00042908	-1.7332	-0.00082813	-2.6312	-0.0012572	477.80131647422684	27.096	0.58609	27.177	26.841	27.427	0.081293					34	15	3	0	0	0	0.023635	1	1402	1402		76.774	43.962	1	343870	+		58345	21313	40879	40942	63778	63778					0.11231521345337114
PKVLFLLIL	9	Unmodified	_PKVLFLLIL_					0	0	0		ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2860107421875	2	528.364996	1054.71544	-0.84698	-0.00044752	-3.3108	-0.0017493	-4.1578	-0.0021968	528.3631282292821	35.85	0.35748	35.645	35.428	35.786	-0.20518					13	9	2	0	0	0	0.024541	1	2737	2737		19.36	5.5846	1	189270			58346	15149	40880	40943	63779	63779					0.1902701883266218
PKVPKPSK	8	Unmodified	_PKVPKPSK_					0	0	0			REV__ENSG00000156453|ENST00000287008|PCDH1	REV__ENSG00000156453|ENST00000287008|PCDH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.2437744140625	2	440.78437	879.554188	0.84663	0.00037318	1.7897	0.00078888	2.6363	0.0011621	440.78397669468285	25.31	0.71793	25.139	24.688	25.406	-0.17151					40	16	4	0	0	0	0.027866	1	1109	1109		27.882	14.107	1	170450	+		58347	25076	40881	40944	63780	63780					0.10959269519423742
PKVPYRALN	9	Unmodified	_PKVPYRALN_					0	0	0			REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2;REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3104858398438	2	529.311284	1056.60801	-0.86654	-0.00045867	-1.7129	-0.00090665	-2.5794	-0.0013653	529.3103934921096	29.251	0.77779	29.254	29.014	29.792	0.0031357					45	19	4	0	0	0	0.85329	1	1768	1768		35.618	1.4457	1	2762800	+		58348	27018;36963;20644	40882	40945	63781	63781					0.08197441951142537
PKVRHLLD	8	Unmodified	_PKVRHLLD_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.75250244140625	2	489.298176	976.581799	-1.1135	-0.00054485	1.8741	0.000917	0.76058	0.00037215	489.2990209964355	29.09	0.75127	29.09	28.696	29.447	0					33	18	3	0	0	0	0.027866	1	1754	1754		31.955	18.996	1	486610	+		58349	23569	40883	40946	63782	63782					0.09257172779666689
PKVSLEPL	8	Unmodified	_PKVSLEPL_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.76788330078125	2	441.768386	881.522219	-0.32178	-0.00014215	-0.70805	-0.00031279	-1.0298	-0.00045495	441.7681351071089	102.79	1.3357	102.79	102.48	103.82	0					96	32	5	0	0	0	1.0239	1	13158	13158		33.516	0	1	28165000			58350	6618	40884	40947	63783	63783					0.07671857045602337
PKVSLEPL	8	Unmodified	_PKVSLEPL_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7679138183594	2	441.768386	881.522219	0.37011	0.0001635	-1.3269	-0.00058618	-0.95679	-0.00042268	441.76786199204633	102.85	1.6021	102.85	102.5	104.11	-0.0046005					103	38	6	0	0	0	0.97794	1	13090	13090		40.778	0.20554	1	25278000			58351	6618	40884	40947	63784	63784					0.07671857045602337
PKVVPTLP	8	Unmodified	_PKVVPTLP_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.74951171875	2	425.773471	849.53239	0.013944	5.9368E-06	-2.2799	-0.00097073	-2.266	-0.0009648	425.77238013172865	25.796	0.27821	25.625	25.457	25.735	-0.17078					9	6	2	0	0	0	0.027866	1	1261	1261		13.775	0	1	58436			58352	6618	40885	40948	63785	63785					0.10160464770854105
PKWLESNL	8	Unmodified	_PKWLESNL_					0	0	0			REV__ENSG00000115548|ENST00000312912|KDM3A	REV__ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2947692871094	2	493.768917	985.523281	-0.11465	-5.6613E-05	0.021102	1.0419E-05	-0.093552	-4.6193E-05	493.76874257796163	52.849	0.80943	52.849	52.595	53.404	0					44	21	4	0	0	0	0.027866	1	5738	5738		18.324	0	1	2184000	+		58353	22212	40886	40949	63786	63786					0.029940714145254788
PKWVSKPVIDV	11	Unmodified	_PKWVSKPVIDV_					0	0	0			REV__ENSG00000104941|ENST00000221538|RSPH6A	REV__ENSG00000104941|ENST00000221538|RSPH6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.3755493164062	2	634.374081	1266.73361	0.84136	0.00053374	3.6299	0.0023027	4.4713	0.0028365	634.3762285727594	110.55	0.44147	110.54	110.34	110.78	-0.011299					33	15	3	0	0	0	1.0017	1	13965	13965		36.447	4.9169	1	6812000	+		58354	21483	40887	40950	63787	63787					0.11091109016683731
PKWVSKPVIDV	11	Unmodified	_PKWVSKPVIDV_					0	0	0			REV__ENSG00000104941|ENST00000221538|RSPH6A	REV__ENSG00000104941|ENST00000221538|RSPH6A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	634.374081	1266.73361	0.84136	0.00053374	3.6299	0.0023027	4.4713	0.0028365	634.3762285727594	110.55	0.44147	110.54	110.34	110.78	-0.011299	-0.022269	-0.0009545	NaN	36.447	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6812000	+		58355	21483	40887	40950							0.11091109016683731
PKYGFLMV	8	Unmodified	_PKYGFLMV_					0	0	0			REV__nc|ENSG00000140025|Q9BUY7-4|EFCAB11	REV__nc|ENSG00000140025|Q9BUY7-4|EFCAB11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.3012390136719	2	477.759507	953.50446	-0.67226	-0.00032118	-2.7107	-0.0012951	-3.383	-0.0016162	477.7577220083145	33.251	0.4818	33.085	32.839	33.321	-0.16565					18	11	2	0	0	0	0.027866	1	2370	2370		52.299	26.849	1	113990	+		58356	23985	40888	40951	63788	63788					0.02584818519108012
PKYKEEDYLI	10	Unmodified	_PKYKEEDYLI_					0	0	0			REV__nc|ENSG00000080910|P36980-2|CFHR2	REV__nc|ENSG00000080910|P36980-2|CFHR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.2664489746094	3	433.227333	1296.66017	0.15861	6.8715E-05	3.5328	0.0015305	3.6914	0.0015992	433.2286746284771	46.133	0.62832	46.133	45.852	46.48	0					25	17	2	0	0	0	0.03519	1	4547	4547		27.047	9.5793	1	84020	+		58357	20668	40889	40952	63789	63789					0.0237051578358205
PKYKEEDYLI	10	Unmodified	_PKYKEEDYLI_					0	0	0			REV__nc|ENSG00000080910|P36980-2|CFHR2	REV__nc|ENSG00000080910|P36980-2|CFHR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	433.227333	1296.66017	-0.88865	-0.00038499	5.4471	0.0023598	4.5585	0.0019749	433.2294316657299	46.344	0.69166	46.192	45.789	46.481	-0.15156	0.078809	0.001214	NaN	27.047	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126090	+		58358	20668	40889	40952							0.0237051578358205
PKYKEEDYLI	10	Unmodified	_PKYKEEDYLI_					0	0	0			REV__nc|ENSG00000080910|P36980-2|CFHR2	REV__nc|ENSG00000080910|P36980-2|CFHR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	433.227333	1296.66017	0.19821	8.5869E-05	3.5524	0.001539	3.7506	0.0016248	433.2286279448012	45.964	0.54349	46.015	45.864	46.408	0.051395	-0.098311	-0.0012486	NaN	27.047	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116650	+		58359	20668	40889	40952							0.0237051578358205
PKYREWHHF	9	Unmodified	_PKYREWHHF_					0	0	0		ENSG00000089220|ENST00000261313|PEBP1	ENSG00000089220|ENST00000261313|PEBP1	ENSG00000089220|ENST00000261313|PEBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.75921630859375	3	433.884235	1298.63087	-0.32434	-0.00014073	2.3455	0.0010177	2.0212	0.00087696	433.8849091394168	21.888	2.167	21.888	20.998	23.165	0					73	45	2	0	0	0	0.024541	1	677	677		26.693	8.1619	1	42089			58360	1902	40890	40953	63790	63790					-0.006495389314068234
PKYREWHHF	9	Unmodified	_PKYREWHHF_					0	0	0		ENSG00000089220|ENST00000261313|PEBP1	ENSG00000089220|ENST00000261313|PEBP1	ENSG00000089220|ENST00000261313|PEBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	433.884235	1298.63087	-0.13668	-5.9303E-05	8.7462	0.0037948	8.6095	0.0037355	434.2223529972675	21.941	0.24103	21.739	21.614	21.855	-0.20199	-0.07431	0.0071029	NaN	26.693	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8140.2			58361	1902	40890	40953							-0.006495389314068234
PLAAEPVK	8	Unmodified	_PLAAEPVK_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1507873535156	2	412.747453	823.480354	-0.45987	-0.00018981	-2.5807	-0.0010652	-3.0406	-0.001255	412.74632917271106	81.688	0.81131	81.545	81.316	82.127	-0.14249					37	18	3	0	0	0	0.027866	1	9793	9793		33.516	13.034	1	262590	+		58362	21502	40891	40954	63791	63791					0.06155301357091503
PLAAGKFDREL	11	Unmodified	_PLAAGKFDREL_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.8367919921875	2	608.837862	1215.66117	-0.99218	-0.00060407	-0.41529	-0.00025284	-1.4075	-0.00085692	608.8374589612363	109.83	0.74304	109.7	109.51	110.25	-0.12524					78	33	4	0	0	0	1.0718	1	13513	13513		19.104	0	1	5435400			58363	6024	40892	40955	63792	63792					0.061967749431460106
PLAAIRKV	8	Unmodified	_PLAAIRKV_					0	0	0			REV__ENSG00000124089|ENST00000243911|MC3R;REV__ENSG00000176136|ENST00000589410|MC5R	REV__ENSG00000124089|ENST00000243911|MC3R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7799377441406	2	434.292362	866.570172	0.16024	6.9592E-05	-0.56459	-0.0002452	-0.40435	-0.0001756	434.2920782083533	46.519	0.34902	46.422	46.223	46.572	-0.096653					17	9	3	0	0	0	0.027866	1	4495	4495		25.45	0	1	171760	+		58364	22729;26996	40893	40956	63793	63793					0.13154975756310705
PLAAIRKV	8	Unmodified	_PLAAIRKV_					0	0	0			REV__ENSG00000124089|ENST00000243911|MC3R;REV__ENSG00000176136|ENST00000589410|MC5R	REV__ENSG00000124089|ENST00000243911|MC3R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	434.292362	866.570172	-0.16731	-7.2663E-05	0.11716	5.0883E-05	-0.05015	-2.178E-05	434.29240358708756	46.569	0.45522	46.375	46.089	46.545	-0.19387					20	12	3	0	0	0	0.027866	1	4500	4500		25.45	0	1	482220	+		58365	22729;26996	40893	40956	63794	63794					0.13154975756310705
PLAAIVDL	8	Unmodified	_PLAAIVDL_					0	0	0			REV__ENSG00000135519|ENST00000257981|KCNH3	REV__ENSG00000135519|ENST00000257981|KCNH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.24896240234375	2	406.249829	810.485105	0.38561	0.00015665	-3.5924	-0.0014594	-3.2068	-0.0013028	406.2482566602026	110.51	0.62167	110.39	110.14	110.76	-0.12525					30	19	2	0	0	0	1.0574	1	13570	13570		20.482	0	1	171040	+		58366	23552	40894	40957	63795	63795					0.07228185499832307
PLAAKLVDLP	10	Unmodified	_PLAAKLVDLP_					0	0	0		TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant;nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	TAF7L|p.T170Pfs*35|1|0.72|ENSG00000102387|chrX:101283479-101283479|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7922973632812	2	518.823692	1035.63283	1.0833	0.00056205	-0.2572	-0.00013344	0.82612	0.00042861	519.3256085759273	51.578	0.22581	51.394	51.298	51.524	-0.18404					7	5	2	0	0	0	0.03519	1	5314	5314		23.042	7.4007	1	114720			58367	38054	40895	40958	63796	63796					0.11644077033838585
PLAALVRLLL	10	Unmodified	_PLAALVRLLL_					0	0	0			REV__ENST00000471501.1_1_1:11709834-11710766:-|nuORF	REV__ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.81640625	2	539.870977	1077.7274	-0.38572	-0.00020824	-4.1893	-0.0022617	-4.575	-0.0024699	539.8689764342519	45.628	0.099464	45.375	45.292	45.392	-0.25252					4	2	2	0	0	0	0.03519	1	4323	4323		11.511	3.8207	1	229420	+		58368	22286	40896	40959	63797	63797					0.19164635575839384
PLAAPIKVRCV	11	Unmodified	_PLAAPIKVRCV_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.8590087890625	2	583.857544	1165.70053	0.62503	0.00036493	1.6447	0.00096029	2.2698	0.0013252	583.8583386779724	97.147	1.1257	97.011	96.613	97.738	-0.13671					80	24	4	0	0	0	1.0442	1	12033	12033		26.693	1.1189	1	1483900	+		58369	24425	40897	40960	63798	63798					0.12431203692995041
PLAAPIKVRCV	11	Unmodified	_PLAAPIKVRCV_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.8591918945312	2	583.857544	1165.70053	0.21983	0.00012835	2.1645	0.0012637	2.3843	0.0013921	583.8586504901666	97.148	1.1572	97.024	96.617	97.774	-0.12368					90	25	5	0	0	0	1.0119	3	12017	12005;12017;12028		34.173	2.6427	1	1344500	+		58370	24425	40897	40960	63799;63800;63801	63800					0.12431203692995041
PLAAPIKVRCV	11	Unmodified	_PLAAPIKVRCV_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.85888671875	2	583.857544	1165.70053	-0.716	-0.00041804	2.9912	0.0017465	2.2752	0.0013284	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	0.98218	2	12007	12007;12057		40.778	18.818	1	1429300	+		58371	24425	40897	40960	63802;63803	63802					0.12431203692995041
PLAAPVPVEQA	11	Unmodified	_PLAAPVPVEQA_					0	0	0		ENSG00000174206|ENST00000398055|KICS2;ENST00000540673.1_1_12:64615457-64616017:-|nuORF	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2765502929688	2	546.308406	1090.60226	-1.7474	-0.00095462	3.9599	0.0021633	2.2125	0.0012087	546.3104770321288	30.345	0.69593	30.345	29.855	30.55	0					28	16	3	0	0	0	0.024756	1	1940	1940		22.58	9.7679	1	124120			58372	8450	40898	40961	63804	63804					0.06058298648804339
PLAAQVAATSL	11	Unmodified	_PLAAQVAATSL_					0	0	0			REV__ENST00000368750.7_1_1:153066129-153066971:-|nuORF	REV__ENST00000368750.7_1_1:153066129-153066971:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2550048828125	2	521.300581	1040.58661	-0.85311	-0.00044472	0.28453	0.00014832	-0.56858	-0.0002964	521.3006134104937	45.216	0.85423	45.116	44.672	45.526	-0.099449					43	23	3	0	0	0	0.024747	1	4267	4267		39.253	0	1	2687300	+		58373	31068	40899	40962	63805	63805					0.06794012131740601
PLAARARSA	9	Unmodified	_PLAARARSA_					0	0	0		ENST00000355426.7_1_2:56149568-56150895:-|nuORF;ENST00000480016.1_1_2:56149476-56150895:-|nuORF	ENST00000355426.7_1_2:56149568-56150895:-|nuORF	ENST00000355426.7_1_2:56149568-56150895:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.77215576171875	2	456.772326	911.530098	-0.2547	-0.00011634	-0.65491	-0.00029914	-0.90961	-0.00041548	456.7722485298994	89.203	2.0073	89.075	88.281	90.288	-0.12774					107	47	4	0	0	0	0.87448	1	10901	10901		34.173	0.65696	1	3333900			58374	12645	40900	40963	63806	63806					0.07079429085740685
PLAERLIRIM	10	Unmodified	_PLAERLIRIM_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENST00000487189.5_1_16:11118684-11138007:+|nuORF;ENST00000463459.1_1_16:11118735-11142283:+|nuORF	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	606.369873046875	2	606.368275	1210.722	-0.35407	-0.0002147	2.3606	0.0014314	2.0066	0.0012167	606.3695669215261	92.775	3.053	92.652	91.457	94.51	-0.12241					189	71	4	0	0	0	1.1246	1	11407	11407		23.523	0.48021	1	650040			58375	1055	40901	40964	63807	63807					0.12506588721726075
PLAERLIRIM	10	Unmodified	_PLAERLIRIM_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENST00000487189.5_1_16:11118684-11138007:+|nuORF;ENST00000463459.1_1_16:11118735-11142283:+|nuORF	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.3692626953125	2	606.368275	1210.722	-0.18686	-0.0001133	2.1292	0.0012911	1.9423	0.0011778	606.3694060704071	92.814	2.8002	92.67	91.745	94.545	-0.14411					184	65	4	0	0	0	1.0719	2	11362	11362;11398		36.447	10.873	1	585740			58376	1055	40901	40964	63808;63809	63808					0.12506588721726075
PLAFLAICIGV	11	Unmodified	_PLAFLAICIGV_					0	0	0			REV__ENSG00000142166|ENST00000270139|IFNAR1	REV__ENSG00000142166|ENST00000270139|IFNAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2930908203125	2	558.827921	1115.64129	-0.37583	-0.00021003	2.344	0.0013099	1.9681	0.0010998	559.3324849972004	76.652	0.42882	76.484	76.181	76.61	-0.16854					12	9	2	0	0	0	0.024733	1	9059	9059		17.365	0	1	58806	+		58377	24136	40902	40965	63810	63810					0.08809307678802725
PLAFRPGK	8	Unmodified	_PLAFRPGK_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2745666503906	2	443.268887	884.523222	-0.3486	-0.00015452	0.40392	0.00017905	0.055321	2.4522E-05	443.2689661634359	49.794	0.64445	49.868	49.693	50.337	0.074192					28	18	2	0	0	0	0.027866	1	5182	5182		20.482	12.251	1	434020	+		58378	21502	40903	40966	63811	63811					0.07634116205190367
PLAFRPGK	8	Unmodified	_PLAFRPGK_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.268887	884.523222	0.030985	1.3735E-05	7.3424	0.0032546	7.3734	0.0032684	443.27321092816476	50.405	0.22852	50.126	49.992	50.221	-0.27977	0.12858	0.0055071	NaN	8.2313	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41701	+		58379	21502	40903	40966							0.07634116205190367
PLAGHATPG	9	Unmodified	_PLAGHATPG_					0	0	0			REV__ENSG00000167987|ENST00000301765|VPS37C	REV__ENSG00000167987|ENST00000301765|VPS37C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.7186584472656	2	410.719227	819.423902	1.0893	0.0004474	-2.1056	-0.00086482	-1.0163	-0.00041743	410.7182657977767	95.455	1.742	95.459	94.878	96.62	0.0041122					98	40	4	0	0	0	0.97516	1	12089	12089		25.45	0	1	2791300	+		58380	26209	40904	40967	63812	63812					0.006966735204287033
PLAGHCTLLV	10	Unmodified	_PLAGHCTLLV_					0	0	0		nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9	nc|ENSG00000204961|Q9Y5H5-2|PCDHA9	nc|ENSG00000204961|Q9Y5H5-2|PCDHA9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2853393554688	2	512.28642	1022.55829	0.14538	7.4476E-05	-0.56602	-0.00028997	-0.42064	-0.00021549	512.286099954275	67.107	0.51019	66.858	66.65	67.16	-0.24839					29	13	3	0	0	0	1.0541	1	7715	7715		38.806	1.7777	1	1250100			58381	10396	40905	40968	63813	63813					0.04790990950834839
PLAHPPYVCP	10	Unmodified	_PLAHPPYVCP_					0	0	0			REV__ENST00000517517.1_1_8:103244498-103250973:-|nuORF	REV__ENST00000517517.1_1_8:103244498-103250973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.2771606445312	2	547.278595	1092.54264	-1.2559	-0.0006873	-2.6688	-0.0014606	-3.9246	-0.0021479	547.2771449491971	30.547	4.1876	30.621	29.523	33.711	0.074314					244	105	4	0	0	0	1.0812	1	1975	1975		35.201	3.5664	1	4201100	+		58382	34218	40906	40969	63814	63814					6.704433781123953E-05
PLAKQLAKP	9	Unmodified	_PLAKQLAKP_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7481994628906	2	483.310752	964.606951	0.21954	0.0001061	-0.57773	-0.00027922	-0.35819	-0.00017312	483.3104732126745	69.024	0.41647	68.732	68.48	68.897	-0.29267					21	10	3	0	0	0	0.024381	1	8229	8229		29.15	0	1	186910	+		58383	25924	40907	40970	63815	63815					0.12323227582214713
PLALAPSPSLS	11	Unmodified	_PLALAPSPSLS_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.85546875	2	526.802957	1051.59136	-0.22486	-0.00011845	0.11215	5.9083E-05	-0.1127	-5.9372E-05	526.8029065452542	76.494	0.91653	76.226	75.89	76.807	-0.26806					51	21	4	0	0	0	0.024735	1	9141	9141		19.997	3.5236	1	883390	+		58384	25538	40908	40971	63816	63816					0.06762896274517516
PLALAYIVF	9	Unmodified	_PLALAYIVF_					0	0	0		nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR	nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2551574707031	2	503.802229	1005.5899	-1.1292	-0.00056889	-3.794	-0.0019114	-4.9232	-0.0024803	503.800466293479	38.669	0.47596	38.493	38.24	38.716	-0.17593					38	12	4	0	0	0	0.024475	1	3246	3246		21.702	0	1	572510			58385	7411	40909	40972	63817	63817					0.08733306976421318
PLALHVKAKK	10	Unmodified	_PLALHVKAKK_					0	0	0		ENSG00000039600|ENST00000265007|SOX30;nc|ENSG00000039600|O94993-2|SOX30	ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.82958984375	2	552.866226	1103.7179	-0.2497	-0.00013805	2.7718	0.0015324	2.5221	0.0013944	552.8656639969381	48.837	0.3499	48.837	48.619	48.969	0					15	9	2	0	0	0	0.03519	1	5000	5000		23.042	5.6775	1	448020			58386	1064	40910	40973	63818	63818					0.170188672903123
PLALKTLTYTG	11	Unmodified	_PLALKTLTYTG_					0	0	0			REV__ENSG00000087076|ENST00000263278|HSD17B14	REV__ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3435668945312	2	589.344989	1176.67542	-2.3876	-0.0014071	-1.1613	-0.0006844	-3.5489	-0.0020915	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0017	1	11510	11510		36.447	4.9169	1	4758600	+		58387	20783	40911	40974	63819	63819					0.09415427371413898
PLALKTLTYTG	11	Unmodified	_PLALKTLTYTG_					0	0	0			REV__ENSG00000087076|ENST00000263278|HSD17B14	REV__ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3425903320312	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	0.95882	1	11720	11720		45.972	14.442	1	12648000	+		58388	20783	40911	40974	63820	63820					0.09415427371413898
PLALKTLTYTG	11	Unmodified	_PLALKTLTYTG_					0	0	0			REV__ENSG00000087076|ENST00000263278|HSD17B14	REV__ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3433837890625	2	589.344989	1176.67542	-1.1102	-0.00065427	-2.5095	-0.001479	-3.6197	-0.0021332	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	0.99553	2	11556	11506;11556		37.812	5.1917	1	4794700	+		58389	20783	40911	40974	63821;63822	63822					0.09415427371413898
PLALKTLTYTG	11	Unmodified	_PLALKTLTYTG_					0	0	0			REV__ENSG00000087076|ENST00000263278|HSD17B14	REV__ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3423461914062	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0017	1	11640	11640		36.447	3.6962	1	13724000	+		58390	20783	40911	40974	63823	63823					0.09415427371413898
PLALKTLTYTG	11	Unmodified	_PLALKTLTYTG_					0	0	0			REV__ENSG00000087076|ENST00000263278|HSD17B14	REV__ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0017	2	11472	11412;11472		36.447	4.9169	1	17343000	+		58391	20783	40911	40974	63824;63825	63825					0.09415427371413898
PLALLLLVA	9	Unmodified	_PLALLLLVA_					0	0	0			REV__ADIPOQ|p.D195Gfs*28|1|0.16|ENSG00000181092|chr3:186854549-186854550|-/T|frameshift_variant	REV__ADIPOQ|p.D195Gfs*28|1|0.16|ENSG00000181092|chr3:186854549-186854550|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.8204345703125	2	461.820421	921.62629	-0.045817	-2.1159E-05	-0.0077031	-3.5575E-06	-0.05352	-2.4717E-05	461.820352128119	97.573	1.001	97.573	97.147	98.148	0					46	22	4	0	0	0	0.93795	1	12455	12455		29.842	0	1	260530	+		58392	19078	40912	40975	63826	63826					0.16234183873120855
PLALPLTVPE	10	Unmodified	_PLALPLTVPE_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-3|LY9	REV__nc|ENSG00000122224|Q9HBG7-3|LY9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3197631835938	2	525.3157	1048.61685	-0.44699	-0.00023481	-2.3801	-0.0012503	-2.8271	-0.0014851	525.3156761624251	64.698	0.74638	64.744	64.448	65.195	0.045502					56	19	4	0	0	0	0.03519	1	7509	7509		11.511	0	1	2989100	+		58393	22633	40913	40976	63827	63827					0.09448370796940253
PLALQNRL	8	Unmodified	_PLALQNRL_					0	0	0			REV__nc|ENSG00000150510|Q86V42-3|FAM124A	REV__nc|ENSG00000150510|Q86V42-3|FAM124A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7607421875	2	462.784902	923.55525	-0.32391	-0.0001499	1.0338	0.00047841	0.70985	0.00032851	462.7868758774279	48.99	0.43007	48.837	48.505	48.935	-0.15277					15	11	2	0	0	0	0.027866	1	5005	5005		29.842	1.9593	1	152450	+		58394	36779	40914	40977	63828	63828					0.09041483888313451
PLAPGKRTIL	10	Unmodified	_PLAPGKRTIL_					0	0	0		ENST00000498652.1_1_7:27186997-27192018:-|nuORF;ENST00000518451.1_1_7:27166683-27192069:-|nuORF;ENST00000467897.2_1_7:27168846-27192162:-|nuORF	ENST00000498652.1_1_7:27186997-27192018:-|nuORF	ENST00000498652.1_1_7:27186997-27192018:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3401489257812	2	533.342584	1064.67061	-0.51819	-0.00027637	-3.9938	-0.0021301	-4.512	-0.0024065	533.3403481687069	97.908	0.97088	97.908	97.549	98.52	0					61	22	4	0	0	0	1.0616	1	12495	12495		37.812	4.9991	1	1189600			58395	14855	40915	40978	63829	63829					0.1408658801931324
PLAPGQLARA	10	Unmodified	_PLAPGQLARA_					0	0	0			REV__ENST00000391860.6_3_1:230486830-230492856:-|nuORF	REV__ENST00000391860.6_3_1:230486830-230492856:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.28515625	2	497.295633	992.576714	-0.25127	-0.00012496	-0.72952	-0.00036279	-0.98079	-0.00048774	497.2953411655086	34.511	0.48792	34.304	34.16	34.648	-0.20696					15	11	2	0	0	0	0.03519	1	2566	2566		35.618	1.4457	1	126940	+		58396	31584	40916	40979	63830	63830					0.08012868917035121
PLAPLWAS	8	Unmodified	_PLAPLWAS_					0	0	0		ENST00000485822.1_1_9:116343956-116344100:+|nuORF	ENST00000485822.1_1_9:116343956-116344100:+|nuORF	ENST00000485822.1_1_9:116343956-116344100:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.7423095703125	2	427.742171	853.469789	0.45594	0.00019502	0.081072	3.4678E-05	0.53701	0.0002297	427.74199434510916	89.595	1.0378	89.608	89.005	90.043	0.013603					68	24	4	0	0	0	0.71717	1	11215	11215		65.897	15.873	1	1190400			58397	15332	40917	40980	63831	63831					0.037193187026559826
PLAQHGPT	8	Unmodified	_PLAQHGPT_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.71856689453125	2	410.719227	819.423902	0.96756	0.0003974	-1.8848	-0.00077414	-0.91727	-0.00037674	410.7183696284328	96.072	1.6868	95.949	95.421	97.108	-0.12305					87	38	4	0	0	0	1.0574	1	11851	11851		23.042	0	1	1564100	+		58398	26954	40918	40981	63832	63832					0.00696673520440072
PLAQPESK	8	Unmodified	_PLAQPESK_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.5409851074219	2	435.239993	868.465432	-0.083129	-3.6181E-05	-0.65719	-0.00028603	-0.74031	-0.00032221	435.23968449987666	20.749	0.39727	20.525	20.315	20.712	-0.22344					12	7	3	0	0	0	0.027866	1	538	538		29.15	0	1	18564			58399	7065	40919	40982	63833	63833					0.025938094890989305
PLARHGPGTP	10	Unmodified	_PLARHGPGTP_					0	0	0			REV__ENSG00000196867|ENST00000301318|ZFP28	REV__ENSG00000196867|ENST00000301318|ZFP28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2942199707031	2	501.777608	1001.54066	0.95349	0.00047844	0.6595	0.00033092	1.613	0.00080937	501.7782043558468	73.816	0.25761	73.816	73.698	73.955	0					6	5	2	0	0	0	0.03519	1	9030	9030		21.96	0	1	92218	+		58400	28231	40920	40983	63834	63834					0.039954117401975964
PLARHGRPL	9	Unmodified	_PLARHGRPL_					0	0	0			REV__ENST00000414789.5_1_19:38709694-38713528:-|nuORF	REV__ENST00000414789.5_1_19:38709694-38713528:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2529296875	2	508.809242	1015.60393	-0.59715	-0.00030384	-1.0428	-0.00053059	-1.6399	-0.00083442	509.3102313906833	36.477	0.63688	36.515	36.166	36.803	0.038044					40	17	3	0	0	0	0.024412	1	2879	2879		24.203	0	1	121270	+		58401	32044	40921	40984	63835	63835					0.09675397248076933
PLARLPLL	8	Unmodified	_PLARLPLL_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.8027648925781	2	446.802563	891.590573	0.3362	0.00015022	-0.17724	-7.919E-05	0.15897	7.1027E-05	446.80235561056344	71.699	0.97589	71.71	71.396	72.372	0.010735					52	25	3	0	0	0	0.67787	2	8639	8628;8639		69.093	0	1	1828800	+		58402	25337	40922	40985	63836;63837	63837					0.14044146416131298
PLARPTPAAEF	11	Unmodified	_PLARPTPAAEF_					0	0	0			REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF	REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.7785034179688	2	585.319306	1168.62406	-0.9436	-0.0005523	0.32628	0.00019098	-0.61731	-0.00036133	585.3193466199835	42.599	0.68337	42.373	42.07	42.753	-0.22597					36	17	3	0	0	0	0.024812	1	3875	3875		77.318	5.4401	1	516450	+		58403	33212	40923	40986	63838	63838					0.04649103397377985
PLASPLAW	8	Unmodified	_PLASPLAW_					0	0	0			REV__ENST00000371600.7_1_9:139935608-139937452:-|nuORF	REV__ENST00000371600.7_1_9:139935608-139937452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.7424621582031	2	427.742171	853.469789	-0.38214	-0.00016346	0.7289	0.00031178	0.34676	0.00014832	427.74231927164794	89.552	0.9099	89.552	89.144	90.054	0					45	21	3	0	0	0	0.82104	1	11298	11298		57.453	10.686	1	806260	+		58404	31168	40924	40987	63839	63839					0.037193187026559826
PLASPLAW	8	Unmodified	_PLASPLAW_					0	0	0			REV__ENST00000371600.7_1_9:139935608-139937452:-|nuORF	REV__ENST00000371600.7_1_9:139935608-139937452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.7419738769531	2	427.742171	853.469789	0.45594	0.00019502	0.081072	3.4678E-05	0.53701	0.0002297	427.74199434510916	89.595	1.0378	89.608	89.005	90.043	0.013603					68	24	4	0	0	0	0.82104	1	11225	11225		57.453	0	1	1190400	+		58405	31168	40924	40987	63840	63840					0.037193187026559826
PLASVPSAPSA	11	Unmodified	_PLASVPSAPSA_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;CASZ1|p.M554Ifs*6|1|0.69|ENSG00000130940|chr1:10655652-10655653|-/A|frameshift_variant;CASZ1|p.K505Tfs*60|1|0.46|ENSG00000130940|chr1:10655788-10655800|ATCACGTCCTGCT/-|frameshift_variant;ENST00000496432.6_1_1:10713095-10754402:-|nuORF	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.77117919921875	2	498.771657	995.528761	-0.00883	-4.4042E-06	-1.3272	-0.00066195	-1.336	-0.00066636	498.77089615614955	104.88	1.8232	104.88	104.27	106.1	0.00097656					165	59	5	0	0	0	1.0238	1	13430	13430		31.53	0	1	5457500			58406	18899	40925	40988	63841	63841					0.03081750206331435
PLATSLSGPPT	11	Unmodified	_PLATSLSGPPT_					0	0	0			REV__ENST00000597960.7_3_19:18642666-18642966:-|nuORF	REV__ENST00000597960.7_3_19:18642666-18642966:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7841186523438	2	520.784764	1039.55498	-0.25442	-0.0001325	-1.0335	-0.00053821	-1.2879	-0.00067071	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	1.0442	1	13277	13277		26.693	1.1189	1	3782600	+		58407	35813	40926	40989	63842	63842					0.03678019377821329
PLAVRALTPVS	11	Unmodified	_PLAVRALTPVS_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.34326171875	2	562.345323	1122.67609	0.019553	1.0995E-05	-3.5399	-0.0019906	-3.5203	-0.0019796	562.3432261733831	89.202	2.5118	89.064	88.274	90.786	-0.13762					130	59	3	0	0	0	1.0344	1	10912	10912		29.17	0	1	606860			58408	699	40927	40990	63843	63843					0.11966266811100468
PLAVTSRVM	9	Oxidation (M)	_PLAVTSRVM(Oxidation (M))_		PLAVTSRVM(1)		PLAVTSRVM(74)	0	0	1		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.27587890625	2	495.276052	988.537551	-0.20656	-0.0001023	0.00015735	7.7934E-08	-0.2064	-0.00010222	495.27588304174236	31.955	1.0066	31.718	31.45	32.457	-0.23667					56	23	3	0	0	0	0.31247	2	2183	2162;2183		73.975	10.996	1	1810600			58409	3886	40928	40991	63844;63845	63845		152			0.04282400571173639
PLAVTSRVM	9	Oxidation (M)	_PLAVTSRVM(Oxidation (M))_		PLAVTSRVM(1)		PLAVTSRVM(77)	0	0	1		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2759704589844	2	495.276052	988.537551	-0.44821	-0.00022199	0.12726	6.3027E-05	-0.32096	-0.00015896	495.2759513370326	31.973	1.2568	31.815	31.227	32.484	-0.15772					73	30	5	0	0	0	0.29104	1	2152	2152		76.847	13.868	1	1870900			58410	3886	40928	40991	63846	63846		152			0.04282400571173639
PLCALRRS	8	Unmodified	_PLCALRRS_					0	0	0		ENST00000488770.1_1_6:13807158-13814656:-|nuORF;ENST00000379170.8_2_6:13801550-13814671:-|nuORF	ENST00000488770.1_1_6:13807158-13814656:-|nuORF	ENST00000488770.1_1_6:13807158-13814656:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.7822570800781	2	458.263279	914.512005	0.47871	0.00021937	1.5414	0.00070636	2.0201	0.00092573	458.263251148864	21.876	0.61936	21.699	21.494	22.113	-0.17721					20	12	3	0	0	0	0.027866	1	718	718		40.573	1.7665	1	54631			58411	13257	40929	40992	63847	63847					0.05132970839383688
PLCHHTHFF	9	Unmodified	_PLCHHTHFF_					0	0	0			REV__ENST00000267116.7_1_12:56636474-56636675:-|nuORF	REV__ENST00000267116.7_1_12:56636474-56636675:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.3316040039062	2	569.766186	1137.51782	-1.2578	-0.00071667	-3.0253	-0.0017237	-4.2832	-0.0024404	569.7637527222361	47.066	0.6573	47.125	46.766	47.423	0.059097					41	17	3	0	0	0	0.024487	1	4607	4607		31.955	14.487	1	650440	+		58412	29768	40930	40993	63848	63848					-0.045439306489470255
PLCKCFRVW	9	Unmodified	_PLCKCFRVW_					0	0	0		ENST00000171887.8_1_2:218667769-218668381:-|nuORF	ENST00000171887.8_1_2:218667769-218668381:-|nuORF	ENST00000171887.8_1_2:218667769-218668381:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.773193359375	2	576.296265	1150.57798	0.06086	3.5073E-05	-0.82071	-0.00047297	-0.75985	-0.0004379	576.295584764615	56.67	0.85413	56.446	56.069	56.923	-0.2248					40	21	3	0	0	0	0.024487	1	6144	6144		40.573	1.3198	1	739770			58413	11116	40931	40994	63849	63849					0.008710436899264096
PLCKFVAKSGY	11	Unmodified	_PLCKFVAKSGY_					0	0	0			REV__CON__P17690	REV__CON__P17690	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.8880920410156	3	404.886365	1211.63727	0.2354	9.5309E-05	2.8716	0.0011627	3.107	0.001258	404.8875355870569	22.716	0.68801	22.531	22.281	22.969	-0.18539					38	14	4	0	0	0	0.97516	1	816	816		42.338	8.4164	1	1566200	+	+	58414	19554	40932	40995	63850	63850					0.03991218185115031
PLCKFVAKSGY	11	Unmodified	_PLCKFVAKSGY_					0	0	0			REV__CON__P17690	REV__CON__P17690	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.8876953125	3	404.886365	1211.63727	0.46075	0.00018655	2.5828	0.0010457	3.0435	0.0012323	404.88742772415054	22.695	0.69196	22.493	22.194	22.886	-0.20199					45	14	5	0	0	0	1.0074	1	796	796		35.178	3.6484	1	1530800	+	+	58415	19554	40932	40995	63851	63851					0.03991218185115031
PLCPPQNPVF	10	Unmodified	_PLCPPQNPVF_					0	0	0		ENST00000390556.6_1_14:106303315-106303369:-|nuORF	ENST00000390556.6_1_14:106303315-106303369:-|nuORF	ENST00000390556.6_1_14:106303315-106303369:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.3065185546875	2	556.283877	1110.5532	-0.49193	-0.00027365	3.7651	0.0020945	3.2732	0.0018208	556.2859368178242	72.237	1.2104	72.039	71.626	72.836	-0.1981					48	28	2	0	0	0	0.03519	1	8412	8412		53.351	10.955	1	363930			58416	13389	40933	40996	63852	63852					0.0023468708818654704
PLCPPQNPVF	10	Unmodified	_PLCPPQNPVF_					0	0	0		ENST00000390556.6_1_14:106303315-106303369:-|nuORF	ENST00000390556.6_1_14:106303315-106303369:-|nuORF	ENST00000390556.6_1_14:106303315-106303369:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.283877	1110.5532	0.58422	0.00032499	8.96	0.0049843	9.5442	0.0053093	556.2892337252732	72.037	0.45215	72.037	71.718	72.17	0	-0.0113	0.0048107	NaN	53.351	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226830			58417	13389	40933	40996							0.0023468708818654704
PLCPPQNPVF	10	Unmodified	_PLCPPQNPVF_					0	0	0		ENST00000390556.6_1_14:106303315-106303369:-|nuORF	ENST00000390556.6_1_14:106303315-106303369:-|nuORF	ENST00000390556.6_1_14:106303315-106303369:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.283877	1110.5532	-0.098663	-5.4885E-05	4.7183	0.0026247	4.6196	0.0025698	556.28650904832	72.347	1.3475	72.07	71.745	73.092	-0.2769	0.021192	9.1552E-05	NaN	53.351	52	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325160			58418	13389	40933	40996							0.0023468708818654704
PLCRFFLY	8	Unmodified	_PLCRFFLY_					0	0	0			REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF	REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7792358398438	2	529.778231	1057.54191	-0.48699	-0.000258	2.3341	0.0012366	1.8471	0.00097855	529.7794735641246	63.592	1.6886	63.399	62.822	64.51	-0.19243					128	42	4	0	0	0	0.96719	1	7243	7243		42.474	3.6683	1	21021000	+		58419	31666	40934	40997	63853	63853					0.015439097847320227
PLCRGACQS	9	Unmodified	_PLCRGACQS_					0	0	0			REV__AHDC1|p.S633L|1|0.32|ENSG00000126705|chr1:27550218-27550218|G/A|missense_variant	REV__AHDC1|p.S633L|1|0.32|ENSG00000126705|chr1:27550218-27550218|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7153015136719	2	467.715304	933.416056	-0.39254	-0.0001836	0.23028	0.0001077	-0.16226	-7.5893E-05	467.7154516135707	26.061	0.83649	26.061	25.779	26.615	0					45	19	4	0	0	0	0.62163	1	1305	1305		51.335	5.3835	1	1461400	+		58420	19090	40935	40998	63854	63854					-0.05331545063006615
PLCRLQPPV	9	Unmodified	_PLCRLQPPV_					0	0	0			REV__ENST00000413030.6_1_2:64478305-64478398:+|nuORF	REV__ENST00000413030.6_1_2:64478305-64478398:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3056640625	2	511.794412	1021.57427	-0.42682	-0.00021844	-1.9521	-0.0009991	-2.379	-0.0012175	512.2951714792599	66.072	0.11461	66.102	66.044	66.159	0.030106					4	2	2	0	0	0	0.024517	1	7770	7770		26.796	9.4311	1	92488	+		58421	32015	40936	40999	63855	63855					0.0643469718771712
PLCTTGRPLT	10	Unmodified	_PLCTTGRPLT_					0	0	0			REV__ENSG00000107815|ENST00000311916|TWNK	REV__ENSG00000107815|ENST00000311916|TWNK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.787353515625	2	529.786784	1057.55902	-0.92323	-0.00048912	1.0526	0.00055764	0.12934	6.8524E-05	529.7872335002784	91.061	1.8739	90.938	90.589	92.463	-0.12341					121	44	4	0	0	0	1.0236	1	11221	11221		42.864	0.46813	1	12767000	+		58422	21688	40937	41000	63856	63856					0.03253785599872572
PLCVIQAKP	9	Unmodified	_PLCVIQAKP_					0	0	0		ENST00000485508.5_1_6:29591152-29599222:-|nuORF	ENST00000485508.5_1_6:29591152-29599222:-|nuORF	ENST00000485508.5_1_6:29591152-29599222:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.7480163574219	2	484.783513	967.552473	0.36924	0.000179	-3.4994	-0.0016964	-3.1301	-0.0015174	484.7816183742985	70.038	0.53167	69.816	69.556	70.087	-0.22245					23	12	2	0	0	0	0.024412	1	8132	8132		31.955	5.2619	1	313460			58423	15328	40938	41001	63857	63857					0.06739892439145478
PLCVPLVNPGL	11	Unmodified	_PLCVPLVNPGL_					0	0	0			REV__ENSG00000139178|ENST00000266542|C1RL	REV__ENSG00000139178|ENST00000266542|C1RL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2791748046875	2	561.323002	1120.63145	0.79231	0.00044474	-0.65294	-0.00036651	0.13937	7.8231E-05	561.3229887830006	84.882	0.8707	84.724	84.321	85.192	-0.15869					17	11	2	0	0	0	0.024749	1	10299	10299		45.952	0	1	201840	+		58424	23921	40939	41002	63858	63858					0.07596119673439716
PLCVTEET	8	Unmodified	_PLCVTEET_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.7218322753906	2	446.210043	890.405534	-0.24959	-0.00011137	-1.2268	-0.00054742	-1.4764	-0.00065879	446.20932805093713	32.844	0.40286	32.678	32.476	32.879	-0.16565					18	9	3	0	0	0	0.027866	1	2295	2295		28.254	1.4582	1	102960			58425	5698	40940	41003	63859	63859					-0.04405249236447162
PLDCFFFNI	9	Unmodified	_PLDCFFFNI_					0	0	0			REV__ENSG00000172377|ENST00000641439|OR9I1	REV__ENSG00000172377|ENST00000641439|OR9I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3499145507812	2	558.265153	1114.51575	-0.593	-0.00033105	4.3875	0.0024494	3.7945	0.0021183	558.2675560930013	48.925	1.9657	48.772	48.193	50.159	-0.15277					72	54	2	0	0	0	0.024457	1	5204	5204		10.265	0	1	334350	+		58426	26666	40941	41004	63860	63860					-0.036924041774000216
PLDGKVVFV	9	Unmodified	_PLDGKVVFV_					0	0	0			REV__ENSG00000123594|ENST00000380622|ATXN3L	REV__ENSG00000123594|ENST00000380622|ATXN3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2894592285156	2	487.289485	972.564418	-0.66796	-0.00032549	0.64189	0.00031278	-0.026071	-1.2704E-05	487.2897074963042	93.238	1.2486	93.245	92.844	94.093	0.0077286					46	29	2	0	0	0	0.59099	1	11765	11765		53.351	9.2347	1	1542700	+		58427	22708	40942	41005	63861	63861					0.07703832454001258
PLDGQKEY	8	Unmodified	_PLDGQKEY_					0	0	0		ENSG00000129116|ENST00000505667|PALLD	ENSG00000129116|ENST00000505667|PALLD	ENSG00000129116|ENST00000505667|PALLD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.2331237792969	2	475.234907	948.455261	-0.83857	-0.00039852	0.19166	9.1084E-05	-0.64691	-0.00030743	475.23496754598204	105.62	0.52734	105.48	105.3	105.83	-0.13099					32	19	2	0	0	0	1.0574	1	13164	13164		26.796	2.5934	1	165950			58428	4331	40943	41006	63862	63862					-0.021027982361488284
PLDKLTINAPL	11	Unmodified	_PLDKLTINAPL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.856689453125	2	597.858264	1193.70197	-0.69485	-0.00041542	-2.7318	-0.0016332	-3.4267	-0.0020487	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.97926	1	11761	11761		41.427	1.3684	1	4386000	+		58429	21936	40944	41007	63863	63863					0.11287116262769814
PLDKLTINAPL	11	Unmodified	_PLDKLTINAPL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8565063476562	2	597.858264	1193.70197	-1.8915	-0.0011309	-1.6048	-0.00095944	-3.4963	-0.0020903	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.013	1	11402	11402		33.922	1.1092	1	5655800	+		58430	21936	40944	41007	63864	63864					0.11287116262769814
PLDKLTINAPL	11	Unmodified	_PLDKLTINAPL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8560791015625	2	597.858264	1193.70197	-0.21005	-0.00012558	-3.4027	-0.0020343	-3.6127	-0.0021599	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	0.97926	2	11359	11359;11370		41.427	2.3918	1	5598500	+		58431	21936	40944	41007	63865;63866	63865					0.11287116262769814
PLDLGFTI	8	Unmodified	_PLDLGFTI_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176809|ENST00000584306|LRRC37A3	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.8538513183594	2	438.247286	874.48002	-0.87759	-0.0003846	-3.585	-0.0015711	-4.4626	-0.0019557	438.24556604278615	38.24	0.83559	38.061	37.775	38.611	-0.17929					53	23	3	0	0	0	0.027866	1	3222	3222		42.474	0	1	1453300			58432	8660	40945	41008	63867	63867					0.03775881637238854
PLDLTPLHL	9	Unmodified	_PLDLTPLHL_					0	0	0		ENST00000592072.1_1_17:40939341-40946077:+|nuORF	ENST00000592072.1_1_17:40939341-40946077:+|nuORF	ENST00000592072.1_1_17:40939341-40946077:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8039855957031	2	509.800217	1017.58588	-0.71853	-0.0003663	4.3932	0.0022397	3.6747	0.0018734	509.80200153311813	83.382	2.3334	83.382	81.751	84.084	0					130	54	4	0	0	0	0.75282	1	10392	10392		42.474	7.2737	1	924240			58433	17365	40946	41009	63868	63868					0.07779217482709555
PLDMLFTL	8	Unmodified	_PLDMLFTL_					0	0	0			REV__nc|ENSG00000164197|Q86T96-2|RNF180	REV__nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7926940917969	2	475.256797	948.499041	0.50431	0.00023968	4.3358	0.0020606	4.8401	0.0023003	475.25903237754045	50.459	0.87617	50.459	50.116	50.992	0					64	25	4	0	0	0	0.027866	1	5253	5253		26.796	0	1	1479600	+		58434	36862	40947	41010	63869	63869					0.022730949366632558
PLDSKTSHR	9	Unmodified	_PLDSKTSHR_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7481079101562	2	520.777805	1039.54106	-0.096259	-5.0129E-05	4.1146	0.0021428	4.0184	0.0020927	520.7797050633941	36.873	0.40123	36.655	36.406	36.807	-0.21855					16	9	2	0	0	0	0.024374	1	2928	2928		40.778	21.418	1	159800	+		58435	21011	40948	41011	63870	63870					0.022867866693559336
PLDSKTSHR	9	Unmodified	_PLDSKTSHR_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.777805	1039.54106	0.20947	0.00010909	5.1031	0.0026576	5.3126	0.0027667	520.7788920971378	36.853	0.12279	36.853	36.764	36.887	0	0.16492	0.00025096	NaN	40.778	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20986	+		58436	21011	40948	41011							0.022867866693559336
PLDVEALLL	9	Unmodified	_PLDVEALLL_					0	0	0			REV__ENST00000601053.5_2_19:49950039-49952749:-|nuORF	REV__ENST00000601053.5_2_19:49950039-49952749:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.29266357421875	2	491.794601	981.574648	0.19051	9.3693E-05	2.9524	0.001452	3.1429	0.0015457	491.79592131630733	71.579	2.796	71.59	70.422	73.218	0.010735					97	70	2	0	0	0	0.024436	1	8458	8458		47.916	22.465	1	185360	+		58437	21475	40949	41012	63871	63871					0.08312395388577443
PLDWGGAAR	9	Unmodified	_PLDWGGAAR_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7720642089844	2	471.743234	941.471915	-0.33145	-0.00015636	-2.3165	-0.0010928	-2.6479	-0.0012491	471.7416240265122	39.95	0.28113	39.973	39.807	40.088	0.023006					11	7	2	0	0	0	0.024263	1	3438	3438		14.137	0	1	78472	+		58438	21528	40950	41013	63872	63872					-0.0011625255953049418
PLEDPGVKSV	10	Unmodified	_PLEDPGVKSV_					0	0	0		nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	nc|ENSG00000177156|P37837-2|TALDO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.241455078125	2	520.784764	1039.55498	-1.468	-0.00076451	-4.1926	-0.0021835	-5.6606	-0.002948	520.7819888657359	75.584	0.35329	75.584	75.343	75.696	0					12	9	2	0	0	0	0.03519	1	9305	9305		27.882	0	1	90988			58439	8715	40951	41014	63873	63873					0.03678019377821329
PLEEKGPPG	9	Unmodified	_PLEEKGPPG_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	461.79541015625	2	462.245275	922.475997	0.79427	0.00036715	1.9548	0.0009036	2.7491	0.0012708	462.245921362621	18.501	0.39629	18.344	18.197	18.594	-0.15637					10	7	2	0	0	0	0.024535	1	294	294		25.45	0	1	29446			58440	10978	40952	41015	63874	63874					0.011657921435357821
PLEERRGVL	9	Unmodified	_PLEERRGVL_					0	0	0			REV__ENST00000475710.1_1_7:150497987-150498938:+|nuORF	REV__ENST00000475710.1_1_7:150497987-150498938:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7850952148438	2	534.811648	1067.60874	-0.47414	-0.00025358	-0.23886	-0.00012775	-0.71301	-0.00038133	534.8115632156392	56.021	0.59661	56.021	55.645	56.241	0					35	14	3	0	0	0	0.024436	1	6161	6161		38.806	9.6566	1	2196200	+		58441	33300	40953	41016	63875	63875					0.07764236600178265
PLEHLLLGQ	9	Unmodified	_PLEHLLLGQ_					0	0	0			REV__ENSG00000139914|ENST00000267426|FITM1	REV__ENSG00000139914|ENST00000267426|FITM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.320068359375	2	510.297842	1018.58113	-0.40269	-0.00020549	2.2696	0.0011582	1.8669	0.00095269	510.2973944350979	69.001	0.74312	69.016	68.722	69.465	0.015121					26	19	2	0	0	0	0.024506	1	8245	8245		38.806	22.333	1	574980	+		58442	23972	40954	41017	63876	63876					0.07258333339973433
PLEKFMVK	8	Unmodified	_PLEKFMVK_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.76861572265625	2	496.285889	990.557224	0.24444	0.00012131	2.7097	0.0013448	2.9541	0.0014661	496.2872563652299	81.44	0.4584	81.247	81.09	81.548	-0.19334					19	10	2	0	0	0	0.027866	1	9804	9804		19.36	0	1	173990			58443	9841	40955	41018	63877	63877					0.0615677658192908
PLEKLKWT	8	Unmodified	_PLEKLKWT_					0	0	0			REV__ENST00000609104.5_1_10:11551634-11569506:-|nuORF	REV__ENST00000609104.5_1_10:11551634-11569506:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.81884765625	2	507.80276	1013.59097	-0.62356	-0.00031664	-4.304	-0.0021856	-4.9276	-0.0025022	507.80060628892124	22.87	0.41608	22.685	22.507	22.923	-0.18539					18	8	4	0	0	0	0.027866	1	863	863		15.642	5.9362	1	95513	+		58444	35977	40956	41019	63878	63878					0.08471521345325073
PLELATVLA	9	Unmodified	_PLELATVLA_					0	0	0		ENST00000493093.5_1_X:118533393-118544252:+|nuORF;ENST00000488158.5_1_X:118533366-118560222:+|nuORF;ENSG00000077713|ENST00000217909|SLC25A43	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.750732421875	2	463.781493	925.548434	-0.43554	-0.000202	-0.29557	-0.00013708	-0.73111	-0.00033908	463.78090534814305	42.619	0.30114	42.393	42.22	42.521	-0.22597					11	7	2	0	0	0	0.024517	1	3850	3850		26.796	8.4717	1	147630			58445	1621	40957	41020	63879	63879					0.08268126217092231
PLELATVLA	9	Unmodified	_PLELATVLA_					0	0	0		ENST00000493093.5_1_X:118533393-118544252:+|nuORF;ENST00000488158.5_1_X:118533366-118560222:+|nuORF;ENSG00000077713|ENST00000217909|SLC25A43	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.781493	925.548434	0.13463	6.2437E-05	3.1254	0.0014495	3.26	0.0015119	463.7827115260849	41.971	0.39756	41.971	41.722	42.12	0	-0.091293	0.00028195	NaN	25.45	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129250			58446	1621	40957	41020							0.08268126217092231
PLELATVLA	9	Unmodified	_PLELATVLA_					0	0	0		ENST00000493093.5_1_X:118533393-118544252:+|nuORF;ENST00000488158.5_1_X:118533366-118560222:+|nuORF;ENSG00000077713|ENST00000217909|SLC25A43	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.781493	925.548434	-0.16747	-7.7667E-05	2.6778	0.0012419	2.5103	0.0011642	463.78262204676406	42.112	0.29181	41.98	41.857	42.149	-0.1322	-0.082297	-0.00013324	NaN	25.45	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116260			58447	1621	40957	41020							0.08268126217092231
PLELATVLA	9	Unmodified	_PLELATVLA_					0	0	0		ENST00000493093.5_1_X:118533393-118544252:+|nuORF;ENST00000488158.5_1_X:118533366-118560222:+|nuORF;ENSG00000077713|ENST00000217909|SLC25A43	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	463.781493	925.548434	0.52237	0.00024226	2.5637	0.001189	3.0861	0.0014313	463.7826494737445	42.046	0.32719	42.072	41.928	42.255	0.026012	0.009545	-0.00023903	NaN	25.45	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148750			58448	1621	40957	41020							0.08268126217092231
PLELATVLA	9	Unmodified	_PLELATVLA_					0	0	0		ENST00000493093.5_1_X:118533393-118544252:+|nuORF;ENST00000488158.5_1_X:118533366-118560222:+|nuORF;ENSG00000077713|ENST00000217909|SLC25A43	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.781493	925.548434	-0.038276	-1.7751E-05	3.0522	0.0014156	3.014	0.0013978	463.78259170532635	42.008	0.32387	41.885	41.752	42.076	-0.12299	-0.17707	0.00021412	NaN	25.45	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61968			58449	1621	40957	41020							0.08268126217092231
PLELATVLA	9	Unmodified	_PLELATVLA_					0	0	0		ENST00000493093.5_1_X:118533393-118544252:+|nuORF;ENST00000488158.5_1_X:118533366-118560222:+|nuORF;ENSG00000077713|ENST00000217909|SLC25A43	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	ENST00000493093.5_1_X:118533393-118544252:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.781493	925.548434	-0.43545	-0.00020196	3.3517	0.0015545	2.9163	0.0013525	463.78308144586714	42.305	0.29066	42.073	41.904	42.194	-0.23186	0.010585	0.00049191	NaN	25.45	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94066			58450	1621	40957	41020							0.08268126217092231
PLELLKPII	9	Unmodified	_PLELLKPII_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.344261	1034.67397	-0.20638	-0.00010698	-2.1932	-0.0011368	-2.3996	-0.0012438	518.342396684404	102.66	0.36998	102.65	102.46	102.83	-0.0046005					11	8	2	0	0	0	0.024381	1	13060	13060		29.15	6.1071	1	194820	+		58451	20971	40958	41021	63880	63880					0.15801838073343788
PLELLLQVL	9	Unmodified	_PLELLLQVL_					0	0	0			REV__nc|ENSG00000167604|Q8NI38|NFKBID	REV__nc|ENSG00000167604|Q8NI38|NFKBID	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7748413085938	2	519.333893	1036.65323	0.033884	1.7597E-05	-3.1339	-0.0016275	-3.1	-0.0016099	519.3322091389123	43.253	0.90559	43.284	42.759	43.664	0.030827					58	24	4	0	0	0	0.024535	1	3959	3959		18.324	0.95945	1	1786800	+		58452	26161	40959	41022	63881	63881					0.13637247693645804
PLEPTVTTY	9	Unmodified	_PLEPTVTTY_					0	0	0			REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7641296386719	2	510.76604	1019.51753	-0.64567	-0.00032979	-2.2621	-0.0011554	-2.9078	-0.0014852	510.76476923991424	25.92	0.89616	25.684	25.051	25.948	-0.23603					46	21	4	0	0	0	0.52323	1	1272	1272		57.811	8.3697	1	1420900	+		58453	26036	40960	41023	63882	63882					0.00854928112187281
PLERGPIEQ	9	Unmodified	_PLERGPIEQ_					0	0	0		ENST00000568593.1_1_3:47421682-47421838:-|nuORF	ENST00000568593.1_1_3:47421682-47421838:-|nuORF	ENST00000568593.1_1_3:47421682-47421838:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.82080078125	2	519.782556	1037.55056	-0.16369	-8.5085E-05	-0.72325	-0.00037593	-0.88694	-0.00046102	520.2858753883698	80.692	0.39896	80.454	80.287	80.686	-0.23784					18	9	3	0	0	0	0.024405	1	9685	9685		44.117	0	1	443600			58454	16987	40961	41024	63883	63883					0.0332855495489639
PLERPLQPL	9	Unmodified	_PLERPLQPL_					0	0	0			REV__ENST00000471788.1_1_2:207651391-207655428:+|nuORF	REV__ENST00000471788.1_1_2:207651391-207655428:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.81689453125	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.91321	1	10522	10522		31.53	1.0262	1	5249700	+		58455	22394	40962	41025	63884	63884					0.09498308748334239
PLEVAVDGGRS	11	Unmodified	_PLEVAVDGGRS_					0	0	0			REV__nc|ENSG00000137486|P49407-2|ARRB1	REV__nc|ENSG00000137486|P49407-2|ARRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.751708984375	2	550.290745	1098.56694	1.4218	0.00078238	3.9349	0.0021653	5.3567	0.0029477	550.291957084967	16.834	0.42225	16.68	16.485	16.907	-0.15376					12	8	2	0	0	0	0.024795	1	98	98		28.081	5.5018	1	43811	+		58456	36701	40963	41026	63885	63885					0.021596361210185933
PLEWKALL	8	Unmodified	_PLEWKALL_					0	0	0		CON__P02672	CON__P02672	CON__P02672	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2892150878906	2	485.292028	968.569503	-0.37363	-0.00018132	-3.9106	-0.0018978	-4.2842	-0.0020791	485.2900089677078	34.525	0.83631	34.35	33.972	34.809	-0.17557					56	20	4	0	0	0	0.38451	1	2551	2551		99.375	6.2317	1	2571300		+	58457	506	40964	41027	63886	63886					0.08396136316616776
PLEWTWVEL	9	Unmodified	_PLEWTWVEL_					0	0	0		nc|ENSG00000095627|Q9BXT4-4|TDRD1;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1;TDRD1|p.V700A|1|0.24|ENSG00000095627|chr10:114214001-114214001|T/C|missense_variant	nc|ENSG00000095627|Q9BXT4-4|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.285400390625	2	586.802957	1171.59136	-0.59013	-0.00034629	-1.4653	-0.00085985	-2.0554	-0.0012061	586.8019236590218	58.766	0.75198	58.578	58.308	59.06	-0.18795					42	18	3	0	0	0	0.024487	1	6540	6540		24.203	0	1	848670			58458	2033	40965	41028	63887	63887					0.012428962745161698
PLFAKIGG	8	Unmodified	_PLFAKIGG_					0	0	0			REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF	REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8875732421875	2	401.744714	801.474875	1.8919	0.00076008	-0.17128	-6.8812E-05	1.7207	0.00069127	401.74177732103533	30.505	0.62328	30.579	30.337	30.96	0.074314					24	14	3	0	0	0	0.027866	1	1885	1885		29.842	16.066	1	131560	+		58459	29381	40966	41029	63888	63888					0.06619622565290229
PLFALSGFI	9	Unmodified	_PLFALSGFI_					0	0	0			REV__nc|ENSG00000141736|P04626-6|ERBB2	REV__nc|ENSG00000141736|P04626-6|ERBB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.277587890625	2	482.778754	963.542954	-0.0019381	-9.3566E-07	-3.7537	-0.0018122	-3.7556	-0.0018131	482.7765879924584	97.265	1.4826	97.265	96.792	98.275	0					67	33	4	0	0	0	0.90698	1	12449	12449		31.955	1.4512	1	992680	+		58460	36726	40967	41030	63889	63889					0.05972447425290284
PLFASPFPQ	9	Unmodified	_PLFASPFPQ_					0	0	0		ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.75555419921875	2	502.26601	1002.51747	-0.44739	-0.00022471	-3.7074	-0.0018621	-4.1547	-0.0020868	502.2640874559234	47.889	0.66065	47.613	47.344	48.004	-0.27598					24	17	2	0	0	0	0.024457	1	4666	4666		15.642	0	1	873810			58461	16752	40968	41031	63890	63890					0.016309729028535003
PLFCCLTQL	9	Unmodified	_PLFCCLTQL_					0	0	0			REV__ENST00000593287.5_1_19:51302159-51302222:-|nuORF	REV__ENST00000593287.5_1_19:51302159-51302222:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2615356445312	2	519.261556	1036.50856	-0.002562	-1.3303E-06	-1.2552	-0.00065176	-1.2577	-0.0006531	519.2608033589122	39.728	1.1412	39.497	38.979	40.12	-0.23021					42	29	2	0	0	0	0.85329	1	3391	3391		35.618	2.8059	1	1236600	+		58462	35764	40969	41032	63891	63891					-0.008234600494915867
PLFCYVPQL	9	Unmodified	_PLFCYVPQL_					0	0	0			REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF	REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.297607421875	2	540.283346	1078.55214	0.46219	0.00024971	-3.3238	-0.0017958	-2.8616	-0.0015461	540.7835022655195	63.251	2.6881	63.305	62.515	65.203	0.054104					131	71	4	0	0	0	0.023528	1	7449	7449		83.287	3.5746	1	941040	+		58463	34582	40970	41033	63892	63892					0.016004727192921564
PLFCYVPQL	9	Unmodified	_PLFCYVPQL_					0	0	0			REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF	REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.283346	1078.55214	-0.35378	-0.00019114	-6.8785	-0.0037164	-7.2323	-0.0039075	540.2795877868164	63.769	0.773	63.577	63.342	64.115	-0.19243	0.29226	-0.00027626	NaN	83.287	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557900	+		58464	34582	40970	41033							0.016004727192921564
PLFCYVPQL	9	Unmodified	_PLFCYVPQL_					0	0	0			REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF	REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.283346	1078.55214	-0.61775	-0.00033376	-8.9683	-0.0048454	-9.586	-0.0051792	541.2818374093778	63.276	0.63302	63.018	62.792	63.425	-0.25824	-0.26656	-0.0025344	NaN	83.287	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162860	+		58465	34582	40970	41033							0.016004727192921564
PLFDARLLGQT	11	Unmodified	_PLFDARLLGQT_					0	0	0			REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	REV__nc|ENSG00000290942|Q86YQ2|BPIFA4P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.2128601074219	3	410.89955	1229.67682	-0.73131	-0.0003005	0.42435	0.00017437	-0.30696	-0.00012613	410.89965526698603	44.359	0.5976	44.255	44.03	44.628	-0.10468					48	15	4	0	0	0	0.02473	1	4141	4141		26.75	1.6819	1	1130800	+		58466	37234	40971	41034	63893	63893					0.07117061460189689
PLFHHLTP	8	Unmodified	_PLFHHLTP_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.77850341796875	2	481.266345	960.518136	-0.099337	-4.7808E-05	2.9438	0.0014167	2.8444	0.0013689	481.26769349943544	56.098	0.47562	55.942	55.82	56.295	-0.15656					18	11	2	0	0	0	0.027866	1	6112	6112		21.702	0	1	221450			58467	5283	40972	41035	63894	63894					0.03629812342569494
PLFKFKKI	8	Unmodified	_PLFKFKKI_					0	0	0		ENSG00000137124|ENST00000377698|ALDH1B1	ENSG00000137124|ENST00000377698|ALDH1B1	ENSG00000137124|ENST00000377698|ALDH1B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.78973388671875	2	510.833863	1019.65317	0.63266	0.00032319	0.71585	0.00036568	1.3485	0.00068887	510.8337679822984	85.727	0.58467	85.727	85.457	86.042	0					23	13	3	0	0	0	0.027866	1	10772	10772		28.254	14.479	1	244340			58468	5091	40973	41036	63895	63895					0.14413292484312024
PLFKKGRTL	9	Unmodified	_PLFKKGRTL_					0	0	0		ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2816772460938	2	530.337301	1058.66005	-0.69687	-0.00036958	0.27714	0.00014698	-0.41973	-0.0002226	530.3372512933391	56.187	0.35612	56.03	55.82	56.176	-0.15656					10	8	2	0	0	0	0.024405	1	6072	6072		44.117	3.3386	1	82322			58469	13018	40974	41037	63896	63896					0.13306605364891766
PLFKKGRTL	9	Unmodified	_PLFKKGRTL_					0	0	0		ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.337301	1058.66005	-0.56971	-0.00030214	0.21134	0.00011208	-0.35836	-0.00019005	530.3372861035306	55.978	0.8571	55.978	55.75	56.608	0	0.021001	-0.00021335	NaN	44.117	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006600			58470	13018	40974	41037							0.13306605364891766
PLFKKGRTL	9	Unmodified	_PLFKKGRTL_					0	0	0		ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.337301	1058.66005	-0.57666	-0.00030582	0.3518	0.00018657	-0.22486	-0.00011925	530.3373216156699	56.083	0.69299	55.927	55.628	56.321	-0.15601	-0.030313	-6.4367E-05	NaN	44.117	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037600			58471	13018	40974	41037							0.13306605364891766
PLFKKGRTL	9	Unmodified	_PLFKKGRTL_					0	0	0		ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	ENST00000371856.6_1_20:47782790-47790762:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.337301	1058.66005	-0.94327	-0.00050025	0.65974	0.00034988	-0.28353	-0.00015037	530.3374501163102	55.796	0.91163	55.894	55.598	56.51	0.097954	-0.063714	0.00026226	NaN	44.117	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	829330			58472	13018	40974	41037							0.13306605364891766
PLFLRFPE	8	Unmodified	_PLFLRFPE_					0	0	0			REV__ENST00000430598.5_1_15:20613931-20667676:-|nuORF	REV__ENST00000430598.5_1_15:20613931-20667676:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7701721191406	2	509.789653	1017.56475	-1.0093	-0.00051451	-1.2983	-0.00066184	-2.3075	-0.0011763	510.2911944545067	83.89	0.39089	83.8	83.596	83.987	-0.090454					11	8	2	0	0	0	0.027866	1	10486	10486		53.351	0	1	127490	+		58473	32357	40975	41038	63897	63897					0.056672521738505566
PLFNPRPTL	9	Unmodified	_PLFNPRPTL_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7662353515625	2	527.805834	1053.59712	-0.85683	-0.00045224	1.2959	0.00068399	0.43908	0.00023175	527.8057846438123	56.767	0.60612	56.603	56.239	56.845	-0.16431					28	16	3	0	0	0	0.024506	1	6347	6347		23.042	0	1	230550	+		58474	23535	40976	41039	63898	63898					0.07246039576853036
PLFPCSARLV	10	Unmodified	_PLFPCSARLV_					0	0	0			REV__ENST00000477812.1_1_7:5569027-5569288:-|nuORF	REV__ENST00000477812.1_1_7:5569027-5569288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.8294677734375	2	551.807519	1101.60049	0.18277	0.00010085	-2.8867	-0.0015929	-2.704	-0.0014921	552.3069590764318	103.03	0.3993	102.86	102.72	103.12	-0.17034					15	9	3	0	0	0	0.03519	1	12780	12780		51.335	0	1	160460	+		58475	33344	40977	41040	63899	63899					0.05374966359181599
PLFPRVEV	8	Unmodified	_PLFPRVEV_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2901306152344	2	478.781828	955.549102	0.18851	9.0253E-05	-3.7461	-0.0017936	-3.5576	-0.0017033	478.77964115235386	26.106	0.71023	26.106	25.779	26.489	0					36	16	4	0	0	0	0.027866	1	1272	1272		37.159	15.199	1	1129200			58476	13766	40978	41041	63900	63900					0.0695496565680287
PLFPRVEV	8	Unmodified	_PLFPRVEV_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.781828	955.549102	-0.29229	-0.00013994	-3.7115	-0.001777	-4.0038	-0.0019169	478.7799882565869	26.014	0.30424	25.843	25.621	25.925	-0.17078	-0.18998	-4.3163E-05	NaN	37.159	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151780			58477	13766	40978	41041							0.0695496565680287
PLFPRVEV	8	Unmodified	_PLFPRVEV_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.781828	955.549102	-0.86877	-0.00041595	-3.3298	-0.0015942	-4.1985	-0.0020102	478.77989735361786	26.216	0.55452	26.053	25.716	26.271	-0.16331	0.019708	0.00032234	NaN	37.159	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119200			58478	13766	40978	41041							0.0695496565680287
PLFPVLALV	9	Unmodified	_PLFPVLALV_					0	0	0		ENST00000495167.3_1_17:15689952-15690237:+|nuORF	ENST00000495167.3_1_17:15689952-15690237:+|nuORF	ENST00000495167.3_1_17:15689952-15690237:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.79779052734375	2	484.812596	967.61064	0.50807	0.00024632	2.6577	0.0012885	3.1658	0.0015348	484.81514536502283	58.782	0.61415	58.782	58.531	59.145	0					24	16	4	0	0	0	0.024289	1	6667	6667		49.211	0	1	781080			58479	15544	40979	41042	63901	63901					0.12553897356076504
PLFQRAQVL	9	Unmodified	_PLFQRAQVL_					0	0	0		ENSG00000165379|ENST00000298119|LRFN5;LRFN5|p.P212T|1|0.24|ENSG00000165379|chr14:41887259-41887259|C/A|missense_variant	ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.55859375	2	536.319109	1070.62366	-1.0407	-0.00055814	-2.966	-0.0015907	-4.0067	-0.0021489	536.3172664799431	35.337	0.41927	35.381	35.156	35.575	0.044056					15	9	2	0	0	0	0.024535	1	2664	2664		25.45	0	1	144910			58480	7407	40980	41043	63902	63902					0.09117728468186215
PLFSGSTMTI	10	Unmodified	_PLFSGSTMTI_					0	0	0			REV__TTC21A|p.V208M|1|0.35|ENSG00000168026|chr3:39114648-39114648|G/A|missense_variant	REV__TTC21A|p.V208M|1|0.35|ENSG00000168026|chr3:39114648-39114648|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.8179321289062	2	527.267893	1052.52123	-1.7463	-0.00092078	2.7589	0.0014547	1.0126	0.00053389	527.2693957217323	62.091	0.5668	62.091	61.796	62.362	0					22	17	2	0	0	0	0.03519	1	7245	7245		42.396	1.618	1	1359100	+		58481	37740	40981	41044	63903	63903					-0.002927253855887102
PLFTAVYQI	9	Unmodified	_PLFTAVYQI_					0	0	0		ENST00000474846.5_1_3:32200349-32207399:+|nuORF;ENSG00000152642|ENST00000282541|GPD1L	ENST00000474846.5_1_3:32200349-32207399:+|nuORF	ENST00000474846.5_1_3:32200349-32207399:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3023681640625	2	526.294768	1050.57498	0.48475	0.00025512	-0.74725	-0.00039327	-0.2625	-0.00013815	526.2936819046371	72.571	0.52476	72.29	72.062	72.586	-0.28124					28	12	3	0	0	0	0.024517	1	8794	8794		26.796	1.3459	1	307200			58482	6288	40982	41045	63904	63904					0.05171815108406008
PLFTSGKSV	9	Unmodified	_PLFTSGKSV_					0	0	0			REV__ENSG00000134853|ENST00000257290|PDGFRA	REV__ENSG00000134853|ENST00000257290|PDGFRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.2538146972656	2	468.263468	934.512382	-0.10956	-5.1302E-05	0.75819	0.00035503	0.64864	0.00030373	468.2636954766202	48.992	0.6431	48.84	48.575	49.218	-0.15277					23	17	2	0	0	0	0.024457	1	5027	5027		29.15	0	1	131880	+		58483	23489	40983	41046	63905	63905					0.04250669040243338
PLFWPLNS	8	Unmodified	_PLFWPLNS_					0	0	0		ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.26165771484375	2	487.260728	972.506903	0.020069	9.7789E-06	-2.4022	-0.0011705	-2.3821	-0.0011607	487.2593941561192	46.703	0.59329	46.703	46.447	47.04	0					23	15	2	0	0	0	0.027866	1	4593	4593		29.842	12.477	1	161630			58484	7405	40984	41047	63906	63906					0.01954990248430022
PLFWPLNS	8	Unmodified	_PLFWPLNS_					0	0	0		ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2619323730469	2	487.260728	972.506903	-0.59691	-0.00029085	-1.5933	-0.00077635	-2.1902	-0.0010672	487.25965878813685	46.742	0.62027	46.794	46.441	47.061	0.051399					24	16	2	0	0	0	0.027866	1	4532	4532		29.842	0	1	192130			58485	7405	40984	41047	63907	63907					0.01954990248430022
PLFWRGYQTE	10	Unmodified	_PLFWRGYQTE_					0	0	0		ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	ENSG00000181192|ENST00000263035|DHTKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2663269042969	3	432.8839	1295.62987	2.2737	0.00098426	2.1272	0.00092083	4.4009	0.0019051	432.88439647575075	24.705	0.65778	24.525	24.198	24.855	-0.18089					18	14	2	0	0	0	0.03519	1	1065	1065		23.378	0.81632	1	66906			58486	9027	40985	41048	63908	63908					-0.006117980909721155
PLGADLLAL	9	Unmodified	_PLGADLLAL_					0	0	0		ENSG00000162006|ENST00000543963|MSLNL	ENSG00000162006|ENST00000543963|MSLNL	ENSG00000162006|ENST00000543963|MSLNL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7679138183594	2	441.768386	881.522219	0.61928	0.00027358	-1.6395	-0.00072428	-1.0202	-0.00045071	441.767731371388	103.03	1.3899	102.86	102.5	103.89	-0.17034					84	33	5	0	0	0	0.75282	1	12826	12826		42.474	1.9018	1	21018000			58487	6910	40986	41049	63909	63909					0.07671857045602337
PLGALQQGS	9	Unmodified	_PLGALQQGS_					0	0	0			REV__ENSG00000188282|ENST00000697321|RUFY4	REV__ENSG00000188282|ENST00000697321|RUFY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.7377624511719	2	435.737617	869.460681	-0.41005	-0.00017867	0.92568	0.00040335	0.51563	0.00022468	435.7378991191487	40.876	0.64494	40.741	40.454	41.099	-0.13554					40	16	3	0	0	0	0.26797	3	3581	3569;3581;3595		79.939	11.867	1	2558100	+		58488	28026	40987	41050	63910;63911;63912	63911					0.02072925346340071
PLGALQQGS	9	Unmodified	_PLGALQQGS_					0	0	0			REV__ENSG00000188282|ENST00000697321|RUFY4	REV__ENSG00000188282|ENST00000697321|RUFY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.7381896972656	2	435.737617	869.460681	-0.16465	-7.1745E-05	0.75712	0.0003299	0.59247	0.00025816	435.7377850759477	41.041	0.72783	40.813	40.508	41.236	-0.2278					53	18	4	0	0	0	0.52323	1	3598	3598		57.811	7.7867	1	2376100	+		58489	28026	40987	41050	63913	63913					0.02072925346340071
PLGCSPCF	8	Unmodified	_PLGCSPCF_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF;LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.17584228515625	2	412.177492	822.340431	-1.4294	-0.00058918	-3.0243	-0.0012466	-4.4538	-0.0018357	412.1762961587461	91.863	2.0153	91.714	90.892	92.908	-0.1487					101	47	4	0	0	0	1.0017	1	11290	11290		37.028	3.5129	1	2106500			58490	2343	40988	41051	63914	63914					-0.07784522243298397
PLGCSPCF	8	Unmodified	_PLGCSPCF_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF;LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.1759033203125	2	412.177492	822.340431	-0.20234	-8.3398E-05	-4.0448	-0.0016672	-4.2471	-0.0017506	412.1757556858591	91.904	1.5124	91.78	91.413	92.926	-0.12341					55	35	2	0	0	0	1.0572	1	11268	11268		28.254	5.2118	1	2202200			58491	2343	40988	41051	63915	63915					-0.07784522243298397
PLGELEQY	8	Unmodified	_PLGELEQY_					0	0	0			REV__ENST00000585297.1_1_17:8869217-8870176:+|nuORF	REV__ENST00000585297.1_1_17:8869217-8870176:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7784423828125	2	474.737283	947.460012	0.059413	2.8206E-05	-4.2989	-0.0020408	-4.2395	-0.0020126	474.7349391747215	23.176	0.72336	23.115	22.663	23.386	-0.060862					36	16	4	0	0	0	0.027866	1	866	866		44.531	9.3304	1	111690	+		58492	35568	40989	41052	63916	63916					-0.015819140933786002
PLGGPPGGSDL	11	Unmodified	_PLGGPPGGSDL_					0	0	0			REV__ENST00000463007.5_1_2:240011659-240219867:-|nuORF	REV__ENST00000463007.5_1_2:240011659-240219867:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.64678955078125	2	483.748182	965.481811	-0.3844	-0.00018595	-0.88475	-0.000428	-1.2692	-0.00061395	483.7488031874257	48.656	0.38144	48.656	48.448	48.83	0					14	10	2	0	0	0	0.024738	1	4973	4973		34.173	9.9698	1	83645	+		58493	32920	40990	41053	63917	63917					-0.0023110934479291245
PLGICTHYSI	10	Unmodified	_PLGICTHYSI_					0	0	0			REV__ENST00000264499.8_1_4:122776711-122780222:-|nuORF	REV__ENST00000264499.8_1_4:122776711-122780222:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.3262329101562	2	552.281334	1102.54812	-1.7069	-0.0009427	-2.7483	-0.0015178	-4.4552	-0.0024605	552.2792077708783	65.118	0.83224	64.855	64.304	65.136	-0.2626					31	21	2	0	0	0	0.03519	1	7688	7688		38.806	7.2763	1	261600	+		58494	29719	40991	41054	63918	63918					0.0009438322556434287
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.24456787109375	2	432.247286	862.48002	-0.94288	-0.00040756	0.22733	9.8263E-05	-0.71555	-0.00030929	432.2474517150645	93.471	1.3378	93.331	92.873	94.211	-0.13995					88	30	5	0	0	0	0.95417	1	11530	11530		44.531	0	1	1569400	+		58495	25879	40992	41055	63919	63919					0.04327881637232167
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.24493408203125	2	432.247286	862.48002	0.37397	0.00016165	-1.2692	-0.00054859	-0.8952	-0.00038695	432.2468884496756	93.516	1.3321	93.394	92.927	94.259	-0.12215					76	30	4	0	0	0	0.95417	1	11551	11551		44.531	2.0566	1	1609800	+		58496	25879	40992	41055	63920	63920					0.04327881637232167
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.24591064453125	2	432.247286	862.48002	0.3533	0.00015271	-1.4524	-0.0006278	-1.0991	-0.00047509	432.2468585643377	93.595	1.2109	93.451	93.002	94.212	-0.14411					71	27	5	0	0	0	0.85409	2	11530	11517;11530		54.765	3.4292	1	1643700	+		58497	25879	40992	41055	63921;63922	63922					0.04327881637232167
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	432.247286	862.48002	0.14931	6.4541E-05	-0.46168	-0.00019956	-0.31236	-0.00013502	432.2470205696953	93.366	0.87872	93.366	93.009	93.888	0	-0.013599	4.665E-05	NaN	54.765	39	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	792930	+		58498	25879	40992	41055							0.04327881637232167
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	432.247286	862.48002	-0.31446	-0.00013592	-1.4662	-0.00063378	-1.7807	-0.0007697	432.24718829680484	93.366	1.1921	93.362	93.032	94.224	-0.0042038	-0.017372	-0.00082179	NaN	54.765	68	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897190	+		58499	25879	40992	41055							0.04327881637232167
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	432.247286	862.48002	0.0003931	1.6992E-07	-1.6629	-0.00071879	-1.6625	-0.00071862	432.2470830930423	93.366	1.0816	93.373	92.971	94.053	0.0077286	-0.006064	-0.00099181	NaN	54.765	61	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	907000	+		58500	25879	40992	41055							0.04327881637232167
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	432.247286	862.48002	0.37397	0.00016165	-1.2692	-0.00054859	-0.8952	-0.00038695	432.2468884496756	93.516	1.3321	93.394	92.927	94.259	-0.12215	0.014112	-0.00065141	NaN	54.765	76	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1609800	+		58501	25879	40992	41055							0.04327881637232167
PLGLLTSY	8	Unmodified	_PLGLLTSY_					0	0	0			REV__ENSG00000165376|ENST00000336803|CLDN2	REV__ENSG00000165376|ENST00000336803|CLDN2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	432.247286	862.48002	0.3533	0.00015271	-1.4524	-0.0006278	-1.0991	-0.00047509	432.2468585643377	93.595	1.2109	93.451	93.002	94.212	-0.14411	0.071571	-0.00080983	NaN	54.765	71	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643700	+		58502	25879	40992	41055							0.04327881637232167
PLGLLWDPEG	10	Unmodified	_PLGLLWDPEG_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7725219726562	2	548.787307	1095.56006	-0.86138	-0.00047272	-2.9282	-0.001607	-3.7896	-0.0020797	548.7856220306178	35.955	0.58848	35.75	35.467	36.056	-0.20518					25	16	2	0	0	0	0.03519	1	2735	2735		20.947	0	1	543310			58503	18639	40993	41056	63923	63923					0.016103232404248047
PLGLPIWTGF	10	Unmodified	_PLGLPIWTGF_					0	0	0		ENST00000371600.7_1_9:139937867-139938101:-|nuORF	ENST00000371600.7_1_9:139937867-139938101:-|nuORF	ENST00000371600.7_1_9:139937867-139938101:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2998657226562	2	550.810585	1099.60662	-0.90366	-0.00049775	3.3293	0.0018338	2.4256	0.0013361	550.8123304160792	26.285	0.44421	26.262	26.042	26.486	-0.023088					14	10	2	0	0	0	0.03519	1	1324	1324		37.159	4.3467	1	126790			58504	13003	40994	41057	63924	63924					0.06079807862374764
PLGLPIWTGF	10	Unmodified	_PLGLPIWTGF_					0	0	0		ENST00000371600.7_1_9:139937867-139938101:-|nuORF	ENST00000371600.7_1_9:139937867-139938101:-|nuORF	ENST00000371600.7_1_9:139937867-139938101:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2998046875	2	550.810585	1099.60662	-0.36421	-0.00020061	2.3121	0.0012735	1.9479	0.0010729	550.8119028736877	26.126	0.48935	26.207	25.967	26.456	0.081293					19	11	3	0	0	0	0.03519	1	1271	1271		37.159	22.294	1	165080			58505	13003	40994	41057	63925	63925					0.06079807862374764
PLGLPLCL	8	Unmodified	_PLGLPLCL_					0	0	0		ENST00000542456.5_1_9:130647809-130647983:-|nuORF	ENST00000542456.5_1_9:130647809-130647983:-|nuORF	ENST00000542456.5_1_9:130647809-130647983:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.7608642578125	2	413.248775	824.482997	0.55728	0.00023029	4.1516	0.0017156	4.7089	0.0019459	413.2503668156603	45.5	0.73925	45.5	45.214	45.953	0					39	21	3	0	0	0	0.027866	1	4415	4415		16.705	0	1	1197100			58506	16454	40995	41058	63926	63926					0.06373433490375646
PLGLQHGTVPG	11	Unmodified	_PLGLQHGTVPG_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2788696289062	2	538.298373	1074.58219	-1.3903	-0.00074839	4.166	0.0022426	2.7757	0.0014942	538.3005318846613	35.828	0.65929	35.828	35.57	36.229	0					44	17	3	0	0	0	0.024787	1	2785	2785		49.536	3.5841	1	1208800	+		58507	23131	40996	41059	63927	63927					0.047885477088584594
PLGLQHGTVPG	11	Unmodified	_PLGLQHGTVPG_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2786254882812	2	538.298373	1074.58219	-1.1278	-0.0006071	3.8923	0.0020952	2.7645	0.0014881	538.300386081973	35.773	0.74625	35.817	35.459	36.205	0.044056					46	19	3	0	0	0	0.024793	1	2722	2722		39.253	6.4404	1	1154500	+		58508	23131	40996	41059	63928	63928					0.047885477088584594
PLGNPFLA	8	Unmodified	_PLGNPFLA_					0	0	0		ENST00000371817.7_1_9:137735754-137735988:+|nuORF	ENST00000371817.7_1_9:137735754-137735988:+|nuORF	ENST00000371817.7_1_9:137735754-137735988:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.2144470214844	2	414.734346	827.454139	-0.73852	-0.00030629	-2.649	-0.0010986	-3.3875	-0.0014049	414.73310792314703	24.496	0.71036	24.449	23.913	24.623	-0.047146					23	15	2	0	0	0	0.027866	1	1039	1039		28.254	0	1	122490			58509	13015	40997	41060	63929	63929					0.03351032185605618
PLGNVLGKPP	10	Unmodified	_PLGNVLGKPP_					0	0	0		nc|ENSG00000214575|Q9BZB8-4|CPEB1;nc|ENSG00000214575|Q9BZB8-2|CPEB1;nc|ENSG00000214575|Q9BZB8-3|CPEB1;nc|ENSG00000214575|Q9BZB8|CPEB1;ENSG00000214575|ENST00000684509|CPEB1;ENST00000570205.1_1_15:83226389-83240190:-|nuORF	nc|ENSG00000214575|Q9BZB8-4|CPEB1	nc|ENSG00000214575|Q9BZB8-4|CPEB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2975769042969	2	496.300384	990.586216	0.4116	0.00020428	-0.42807	-0.00021245	-0.016468	-8.1731E-06	496.30005130597	69.648	0.53207	69.648	69.383	69.915	0					22	12	2	0	0	0	0.03519	1	8410	8410		45.952	7.1458	1	152250			58510	10558	40998	41061	63930	63930					0.0905463720255284
PLGPDISYV	9	Unmodified	_PLGPDISYV_					0	0	0			REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	REV__ENST00000572615.1_1_17:1372344-1373609:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2431945800781	2	480.755475	959.496398	-0.99919	-0.00048037	0.87966	0.0004229	-0.11954	-5.7467E-05	480.7558371408753	61.126	0.97021	60.95	60.443	61.413	-0.1761					45	23	3	0	0	0	0.024354	1	6828	6828		57.811	27.308	1	1015300	+		58511	35425	40999	41062	63931	63931					0.015029628033403242
PLGQEGYLV	9	Unmodified	_PLGQEGYLV_					0	0	0			REV__ITGAX|p.H516L|1|0.2|ENSG00000140678|chr16:31363211-31363211|A/T|missense_variant	REV__ITGAX|p.H516L|1|0.2|ENSG00000140678|chr16:31363211-31363211|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7919616699219	2	488.260925	974.507297	0.53302	0.00026025	-1.146	-0.00055956	-0.613	-0.0002993	488.26027538144666	96.994	0.8363	96.857	96.223	97.059	-0.1367					23	18	2	0	0	0	0.024381	1	11942	11942		55.504	39.862	1	53455	+		58512	36158	41000	41063	63932	63932					0.019023651776251427
PLGQEILL	8	Unmodified	_PLGQEILL_					0	0	0		ENST00000455178.1_1_20:33859902-33864092:-|nuORF	ENST00000455178.1_1_20:33859902-33864092:-|nuORF	ENST00000455178.1_1_20:33859902-33864092:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7684326171875	2	441.768386	881.522219	-0.32178	-0.00014215	-0.70805	-0.00031279	-1.0298	-0.00045495	441.7681351071089	102.79	1.3357	102.79	102.48	103.82	0					96	32	5	0	0	0	1.0239	1	13182	13182		33.516	1.5607	1	28165000			58513	14572	41001	41064	63933	63933					0.07671857045625075
PLGVSLVY	8	Unmodified	_PLGVSLVY_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.2499084472656	2	424.249829	846.485105	-0.17093	-7.2515E-05	1.419	0.00060202	1.2481	0.0005295	424.25040312953325	102.79	2.6572	102.79	100.74	103.4	0.0054169					101	62	3	0	0	0	1.0472	2	13149	13149;13162		29.842	1.5873	1	5970700			58514	1664	41002	41065	63934;63935	63934					0.055721854998637355
PLGVSLVY	8	Unmodified	_PLGVSLVY_					0	0	0		ENSG00000079432|ENST00000681038|CIC;nc|ENSG00000079432|Q96RK0-2|CIC	ENSG00000079432|ENST00000681038|CIC	ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2501525878906	2	424.249829	846.485105	0.59353	0.00025181	0.7089	0.00030075	1.3024	0.00055256	424.2501351892279	103.04	3.3951	102.87	100.71	104.11	-0.17034					139	82	3	0	0	0	1.0472	2	12768	12768;12779		29.842	1.5873	1	9216600			58515	1664	41002	41065	63936;63937	63936					0.055721854998637355
PLHAGAWLLL	10	Unmodified	_PLHAGAWLLL_					0	0	0			REV__ENST00000426955.6_2_3:183954318-183955054:+|nuORF	REV__ENST00000426955.6_2_3:183954318-183955054:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2760009765625	2	545.824027	1089.6335	-0.61138	-0.00033371	-0.31613	-0.00017255	-0.92751	-0.00050626	546.3272474362029	77.809	0.25217	77.647	77.569	77.821	-0.16196					6	5	2	0	0	0	0.03519	1	9268	9268		26.796	13.021	1	39862	+		58516	32279	41003	41066	63938	63938					0.09226916473562596
PLHAWLQS	8	Unmodified	_PLHAWLQS_					0	0	0			REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2538757324219	2	476.255977	950.497401	0.21387	0.00010185	-3.7206	-0.001772	-3.5067	-0.0016701	476.2536982686061	22.407	0.89087	22.205	21.903	22.793	-0.20199					77	18	8	0	0	0	0.78609	1	759	759		60.294	13.528	1	1288400	+		58517	37058	41004	41067	63939	63939					0.020172219628989296
PLHCVMEVD	9	Unmodified	_PLHCVMEVD_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.8573608398438	2	521.738445	1041.46234	-1.2913	-0.00067374	2.905	0.0015156	1.6137	0.00084191	521.7396183026605	75.724	0.55427	75.724	75.516	76.071	0					17	14	2	0	0	0	0.024412	1	9337	9337		31.955	0	1	154760			58518	1019	41005	41068	63940	63940					-0.05673524951566833
PLHLAVER	8	Unmodified	_PLHLAVER_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7773742675781	2	467.777077	933.5396	-0.077421	-3.6216E-05	-0.88984	-0.00041624	-0.96726	-0.00045246	467.7769611752369	25.2	1.0578	25.029	24.602	25.659	-0.17078					45	24	4	0	0	0	0.91239	1	1170	1170		50.025	0	1	787050			58519	8014	41006	41069	63941	63941					0.07017197371283146
PLHLAVER	8	Unmodified	_PLHLAVER_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	467.777077	933.5396	-0.44767	-0.00020941	0.24803	0.00011602	-0.19964	-9.3386E-05	467.7772058115591	25.482	0.6754	25.255	24.842	25.517	-0.22683	0.1192	0.00051143	NaN	50.025	29	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	903540			58520	8014	41006	41069							0.07017197371283146
PLHLAVER	8	Unmodified	_PLHLAVER_					0	0	0		ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	ENSG00000170209|ENST00000303941|ANKK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	467.777077	933.5396	0.29213	0.00013665	-0.56565	-0.0002646	-0.27352	-0.00012794	467.776749042869	25.296	0.67666	25.124	24.688	25.365	-0.17151	-0.011961	-0.00024981	NaN	50.025	34	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789970			58521	8014	41006	41069							0.07017197371283146
PLHPDTPLF	9	Unmodified	_PLHPDTPLF_					0	0	0			REV__ENSG00000185670|ENST00000394807|ZBTB3	REV__ENSG00000185670|ENST00000394807|ZBTB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7813110351562	2	518.776742	1035.53893	-0.3732	-0.00019361	0.68491	0.00035531	0.3117	0.0001617	518.7766019380152	42.069	0.51193	41.937	41.603	42.115	-0.1322					20	14	2	0	0	0	0.024293	1	3830	3830		52.299	15.271	1	402040	+		58522	27783	41007	41070	63942	63942					0.022583579315551106
PLHQHNVMVP	10	Unmodified	_PLHQHNVMVP_					0	0	0			REV__nc|ENSG00000013725|P30203-6|CD6	REV__nc|ENSG00000013725|P30203-6|CD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.3447875976562	2	586.305675	1170.5968	-1.4233	-0.00083447	-3.6251	-0.0021254	-5.0484	-0.0029599	586.3035365710377	90.712	0.90974	90.557	90.181	91.091	-0.1552					29	21	2	0	0	0	0.03519	1	11122	11122		15.642	0	1	69041	+		58523	19962	41008	41071	63943	63943					0.018322965853485584
PLHRRTHPQ	9	Unmodified	_PLHRRTHPQ_					0	0	0		ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	ENST00000469678.1_1_3:53259917-53265542:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.3318481445312	2	571.320506	1140.62646	0.053695	3.0677E-05	-2.02	-0.001154	-1.9663	-0.0011234	571.31924073639	47.031	0.57364	46.878	46.622	47.196	-0.15301					19	14	2	0	0	0	0.024457	1	4683	4683		21.96	7.8228	1	344420			58524	14912	41009	41072	63944	63944					0.06176996645717736
PLHSALTVL	9	Unmodified	_PLHSALTVL_					0	0	0			REV__CON__P01966	REV__CON__P01966	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.787353515625	2	475.78711	949.559667	0.737	0.00035065	-0.87543	-0.00041652	-0.13843	-6.5863E-05	475.7866224351529	85.75	2.0796	85.6	84.582	86.661	-0.14967					104	48	4	0	0	0	0.78069	1	10397	10397		40.573	1.7665	1	4960100	+	+	58525	19536	41010	41073	63945	63945					0.08286948311229025
PLHTLLHVS	9	Unmodified	_PLHTLLHVS_					0	0	0			REV__ENST00000514199.1_1_5:139944539-139945076:+|nuORF	REV__ENST00000514199.1_1_5:139944539-139945076:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8367614746094	2	508.798009	1015.58147	-0.33275	-0.0001693	1.8178	0.00092489	1.485	0.00075559	508.7991132957979	17.645	0.69891	17.439	17.065	17.764	-0.20669					25	13	3	0	0	0	0.024541	1	195	195		17.365	4.4058	1	170480	+		58526	34168	41011	41074	63946	63946					0.07429753059795985
PLHVRALALVE	11	Unmodified	_PLHVRALALVE_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11;nc|ENSG00000088836|Q8NBS3-2|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.5828857421875	3	406.583674	1216.72919	0.36669	0.00014909	0.40293	0.00016383	0.76962	0.00031291	406.5837615324145	110.7	0.44067	110.58	110.51	110.95	-0.12525					30	15	2	0	0	0	1.0621	1	13596	13596		21.78	3.9473	1	830120			58527	1880	41012	41075	63947	63947					0.1294964459377752
PLHYQKSL	8	Unmodified	_PLHYQKSL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.27862548828125	2	493.276909	984.539266	1.1061	0.0005456	2.4011	0.0011844	3.5071	0.00173	493.27787412812	20.173	1.7642	19.977	19.26	21.024	-0.19577					59	35	4	0	0	0	1.0239	1	529	529		33.516	1.5607	1	719150			58528	4087	41013	41076	63948	63948					0.04637777651419128
PLIDMSDI	8	Unmodified	_PLIDMSDI_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2301940917969	2	452.228236	902.44192	0.22669	0.00010251	3.8988	0.0017632	4.1255	0.0018657	452.22992100141795	26.03	0.66526	26.111	25.707	26.372	0.081293					46	15	4	0	0	0	0.61897	1	1230	1230		74.517	0.54187	1	3470200			58529	8707	41014	41077	63949	63949					-0.013203723397509748
PLIEINLA	8	Unmodified	_PLIEINLA_					0	0	0			REV__COLGALT2|p.M393I|1|0.04|ENSG00000198756|chr1:183945522-183945522|C/A|missense_variant	REV__COLGALT2|p.M393I|1|0.04|ENSG00000198756|chr1:183945522-183945522|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7682800292969	2	441.768386	881.522219	0.10055	4.4418E-05	-1.228	-0.00054249	-1.1275	-0.00049807	441.76794852794825	102.93	1.5122	102.8	102.45	103.96	-0.12723					102	35	5	0	0	0	1.0574	1	12795	12795		26.796	0	1	19625000	+		58530	19517	41015	41078	63950	63950					0.07671857045590968
PLIILHKDL	9	Unmodified	_PLIILHKDL_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.81640625	2	531.33951	1060.66447	0.043684	2.3211E-05	3.5113	0.0018657	3.555	0.0018889	531.3412609286156	89.174	0.84113	89.036	88.735	89.576	-0.13762					41	19	3	0	0	0	0.024447	1	10846	10846		25.574	3.6142	1	543120	+		58531	25554	41016	41079	63951	63951					0.13656069787793967
PLIKRFGPI	9	Unmodified	_PLIKRFGPI_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8126831054688	2	520.834394	1039.65424	-0.34499	-0.00017968	-3.4215	-0.001782	-3.7665	-0.0019617	520.8324170124968	40.724	0.84472	40.724	40.516	41.36	0					44	23	3	0	0	0	0.024466	1	3686	3686		25.45	0	1	975550	+		58532	22084	41017	41080	63952	63952					0.13599506853233834
PLIKVKQLT	9	Unmodified	_PLIKVKQLT_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7857666015625	2	520.347335	1038.68012	-0.53027	-0.00027592	0.40861	0.00021262	-0.12166	-6.3304E-05	520.3474227992081	78.333	1.1156	78.349	78.073	79.189	0.015907					42	26	2	0	0	0	0.024495	1	9606	9606		34.173	0	1	421860			58533	10659	41018	41081	63953	63953					0.16232356304840323
PLIKWRTK	8	Unmodified	_PLIKWRTK_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.812744140625	2	521.332019	1040.64948	-0.28194	-0.00014698	-2.632	-0.0013721	-2.9139	-0.0015191	521.3297081850955	41.586	0.43039	41.459	41.29	41.721	-0.12753					13	11	2	0	0	0	0.027866	1	3727	3727		20.947	0	1	150490	+		58534	20705	41019	41082	63954	63954					0.13078622710440868
PLILKVYE	8	Unmodified	_PLILKVYE_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25177001953125	2	487.799686	973.584819	-1.2977	-0.00063303	-1.8942	-0.000924	-3.1919	-0.001557	487.79849060409515	30.134	1.0633	30.134	29.487	30.55	0					44	25	2	0	0	0	0.027866	1	1850	1850		38.806	14.603	1	109950	+		58535	23614	41020	41083	63955	63955					0.09697003113797109
PLILVHSGT	9	Unmodified	_PLILVHSGT_					0	0	0			REV__ENST00000433366.6_1_10:75557771-75558005:+|nuORF	REV__ENST00000433366.6_1_10:75557771-75558005:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2950439453125	2	468.779285	935.544017	0.15331	7.187E-05	4.3341	0.0020317	4.4874	0.0021036	468.78090323615396	63.255	0.43277	63.255	63.126	63.558	0					20	11	3	0	0	0	0.024412	1	7404	7404		40.573	8.6178	1	243620	+		58536	32402	41021	41084	63956	63956					0.07366661794185347
PLIPEEDPN	9	Unmodified	_PLIPEEDPN_					0	0	0		ENST00000595560.1_1_19:58067392-58071050:-|nuORF	ENST00000595560.1_1_19:58067392-58071050:-|nuORF	ENST00000595560.1_1_19:58067392-58071050:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2540283203125	2	512.253297	1022.49204	-0.47089	-0.00024122	0.7964	0.00040796	0.32551	0.00016674	512.253782438945	54.125	2.449	54.125	53.655	56.104	0					199	69	5	0	0	0	0.36105	1	5930	5930		68.485	4.2774	1	29802000			58537	17420	41022	41085	63957	63957					-0.01830546410246825
PLIPLITPP	9	Unmodified	_PLIPLITPP_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1;REV__STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant;REV__nc|ENSG00000010327|Q9NY15-2|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7328796386719	2	480.810054	959.605554	0.21137	0.00010163	-2.9782	-0.001432	-2.7669	-0.0013303	480.80856971821646	57.38	0.45849	57.38	57.038	57.496	0					15	11	2	0	0	0	0.024466	1	6433	6433		33.516	8.0654	1	98030	+		58538	19906;37584;33456	41023	41086	63958	63958					0.12413593493465669
PLIRLAYAH	9	Unmodified	_PLIRLAYAH_					0	0	0			REV__SOBP|p.M820I|1|0.12|ENSG00000112320|chr6:107635304-107635304|G/T|missense_variant	REV__SOBP|p.M820I|1|0.12|ENSG00000112320|chr6:107635304-107635304|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.286376953125	2	527.313826	1052.6131	-0.59417	-0.00031332	-3.1633	-0.0016681	-3.7575	-0.0019814	527.3120005170534	30.429	0.28882	30.503	30.378	30.667	0.074314					9	6	2	0	0	0	0.024517	1	1884	1884		12.959	0	1	25919	+		58539	37519	41024	41087	63959	63959					0.08889745813735317
PLISENIWY	9	Unmodified	_PLISENIWY_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|141|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|141|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|141|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7700805664062	2	567.795132	1133.57571	0.16642	9.4491E-05	-0.72896	-0.0004139	-0.56254	-0.00031941	567.7945789680296	72.682	0.68234	72.418	72.17	72.852	-0.26479					23	15	2	0	0	0	0.024447	1	8522	8522		40.778	0	1	310880			58540	17894	41025	41088	63960	63960					0.01426609757481856
PLISIALKV	9	Unmodified	_PLISIALKV_					0	0	0		nc|ENSG00000079739|P36871-3|PGM1;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1	nc|ENSG00000079739|P36871-3|PGM1	nc|ENSG00000079739|P36871-3|PGM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.80712890625	2	477.323328	952.632104	0.71305	0.00034036	-0.1095	-5.2267E-05	0.60355	0.00028809	477.3231857245938	102.45	0.33862	102.32	102.15	102.49	-0.12931					11	7	2	0	0	0	0.024535	1	12726	12726		18.324	3.6603	1	45867			58541	1673	41026	41089	63961	63961					0.15389282384796843
PLITPVLQKTG	11	Unmodified	_PLITPVLQKTG_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.8588256835938	2	583.860806	1165.70706	-0.41859	-0.0002444	-2.9873	-0.0017442	-3.4059	-0.0019886	583.8588726706961	96.987	1.2388	96.995	96.575	97.813	0.0089111					82	27	5	0	0	0	0.99553	1	12322	12322		37.812	10.764	1	1557300			58542	37917	41027	41090	63962	63962					0.1308342012534922
PLIVPFPLLD	10	Unmodified	_PLIVPFPLLD_					0	0	0			REV__L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|23|1|anti-sense	REV__L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|23|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3438110351562	2	562.341718	1122.66888	-0.75902	-0.00042683	3.7385	0.0021023	2.9795	0.0016755	562.3436714978816	89.172	2.615	89.009	88.263	90.878	-0.1626					183	62	4	0	0	0	1.1259	1	10841	10841		24.203	0.68005	1	736810	+		58543	36208	41028	41091	63963	63963					0.11245534210706865
PLIYTKTVP	9	Unmodified	_PLIYTKTVP_					0	0	0			REV__ENST00000562258.5_1_15:42457155-42457371:-|nuORF	REV__ENST00000562258.5_1_15:42457155-42457371:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2992553710938	2	516.310418	1030.60628	0.017075	8.816E-06	2.9877	0.0015426	3.0047	0.0015514	516.311403404444	67.889	0.38119	67.889	67.606	67.987	0					10	9	2	0	0	0	0.02435	1	8095	8095		51.335	12.529	1	125440	+		58544	35192	41029	41092	63964	63964					0.09220388142512093
PLKDFYGNN	9	Unmodified	_PLKDFYGNN_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2825317382812	2	534.261456	1066.50836	-0.845	-0.00045145	4.2226	0.002256	3.3776	0.0018045	534.2636448959762	54.267	0.55415	54.267	53.907	54.461	0					24	15	2	0	0	0	0.024539	1	5932	5932		20.947	0	1	305290	+		58545	21981	41030	41093	63965	63965					-0.02223420453469771
PLKICLPSV	9	Unmodified	_PLKICLPSV_					0	0	0		nc|ENSG00000248124|Q2M238|RRN3P1;ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	nc|ENSG00000248124|Q2M238|RRN3P1;ENST00000563573.5_1_16:22361166-22444153:-|nuORF	ENST00000563573.5_1_16:22361166-22444153:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.75665283203125	2	485.293714	968.572874	-0.55259	-0.00026817	3.0162	0.0014637	2.4636	0.0011956	485.2954491770403	45.836	0.67124	45.633	45.259	45.93	-0.20226					30	18	2	0	0	0	0.024487	1	4354	4354		31.955	0	1	290760			58546	18766;1798	41031	41094	63966	63966					0.08733063098964067
PLKILLRLK	9	Unmodified	_PLKILLRLK_					0	0	0			REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3275146484375	2	547.394619	1092.77469	-0.33905	-0.0001856	-2.0229	-0.0011073	-2.362	-0.0012929	547.3935650243186	41.032	0.10667	41.032	40.944	41.051	0					4	2	2	0	0	0	0.024541	1	3655	3655		7.1934	0	1	129970	+		58547	23847	41032	41095	63967	63967					0.23200914846825071
PLKKAMDVL	9	Unmodified	_PLKKAMDVL_					0	0	0			REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15	REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.7806701660156	2	507.804445	1013.59434	-1.0942	-0.00055566	4.4212	0.0022451	3.327	0.0016895	507.80662442873074	21.756	0.63025	21.543	21.167	21.798	-0.2128					20	12	2	0	0	0	0.024541	1	677	677		17.365	0	1	155870	+		58548	21305	41033	41096	63968	63968					0.08808448127660995
PLKKEAIIVSN	11	Unmodified	_PLKKEAIIVSN_					0	0	0		nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	606.368896484375	2	606.371538	1210.72852	-0.35407	-0.0002147	-3.0199	-0.0018312	-3.374	-0.0020459	606.3695669215261	92.775	3.053	92.652	91.457	94.51	-0.12241					189	71	4	0	0	0	1.0183	1	11383	11383		32.751	6.6872	1	650040			58549	4562	41034	41097	63969	63969					0.13158805154080255
PLKKGNKEPNP	11	Unmodified	_PLKKGNKEPNP_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.8850402832031	3	407.903183	1220.68772	1.2012	0.00048999	-0.50473	-0.00020588	0.6965	0.0002841	407.9027811131187	23.032	0.41571	22.84	22.664	23.079	-0.19117					15	8	3	0	0	0	0.02477	1	869	869		17.167	0	1	67640			58550	5353	41035	41098	63970	63970					0.08620463834472503
PLKKIFLF	8	Unmodified	_PLKKIFLF_					0	0	0		ENST00000239231.6_1_5:167984225-167984402:-|nuORF	ENST00000239231.6_1_5:167984225-167984402:-|nuORF	ENST00000239231.6_1_5:167984225-167984402:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.8136901855469	2	503.328414	1004.64227	-0.31827	-0.0001602	1.1038	0.00055557	0.78551	0.00039537	503.3288468594887	96.213	0.32265	96.213	95.991	96.314	0					9	7	2	0	0	0	0.027866	1	12254	12254		8.8223	0	1	121380			58551	11273	41036	41099	63971	63971					0.14013890110027205
PLKKVIVRKKA	11	Unmodified	_PLKKVIVRKKA_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2	REV__ENSG00000064270|ENST00000262429|ATP2C2	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3019714355469	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.644	1	70.387	69.887	70.887	-0.25713								0	0	0	1.7576	1	8238	8238		3.4087	0.19739	1		+		58552	20281	41037	41100	63972	63972					0.2580734920395571
PLKKYLLL	8	Unmodified	_PLKKYLLL_					0	0	0		ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.8299865722656	2	494.333696	986.652839	0.062182	3.0739E-05	2.6418	0.0013059	2.704	0.0013367	494.3344720782167	106.14	0.54523	106.14	105.73	106.27	0.00014496					29	20	2	0	0	0	0.027866	1	13510	13510		4.6817	0.69651	1	165290			58553	1298	41038	41101	63973	63973					0.15897872764458043
PLKNQIWGL	9	Unmodified	_PLKNQIWGL_					0	0	0			REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.24365234375	2	534.813659	1067.61277	-0.51956	-0.00027787	-0.064648	-3.4575E-05	-0.58421	-0.00031244	534.8134714232401	56.474	0.5537	56.25	55.99	56.544	-0.2248					21	13	2	0	0	0	0.024381	1	6081	6081		45.952	0	1	238260	+		58554	28240	41039	41102	63974	63974					0.08166326093896714
PLKPHQPPK	9	Unmodified	_PLKPHQPPK_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.23828125	2	521.313826	1040.6131	-0.29119	-0.0001518	-1.1922	-0.00062149	-1.4833	-0.00077329	521.3130743955883	63.526	0.68517	63.298	63.055	63.74	-0.22773					40	17	3	0	0	0	0.024354	1	7198	7198		47.916	1.9434	1	1390400	+		58555	20639	41040	41103	63975	63975					0.09441745813751368
PLKPHQPPK	9	Unmodified	_PLKPHQPPK_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.313826	1040.6131	-0.55385	-0.00028873	0.86988	0.00045348	0.31603	0.00016475	521.3141014869128	63.265	0.71787	63.265	63.054	63.772	0	-0.047198	0.0023679	NaN	47.916	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1326200	+		58556	20639	41040	41103							0.09441745813751368
PLKPHQPPK	9	Unmodified	_PLKPHQPPK_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.313826	1040.6131	-0.10743	-5.6006E-05	0.66789	0.00034818	0.56046	0.00029218	521.313832076914	63.534	0.64575	63.283	63.013	63.659	-0.25141	-0.029731	0.0021573	NaN	47.916	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1314300	+		58557	20639	41040	41103							0.09441745813751368
PLKPHQPPK	9	Unmodified	_PLKPHQPPK_					0	0	0			REV__ENSG00000079482|ENST00000355520|OPHN1	REV__ENSG00000079482|ENST00000355520|OPHN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.313826	1040.6131	1.1757	0.00061292	-1.1094	-0.00057836	0.066294	3.456E-05	521.3129122228387	63.309	0.78474	63.363	63.054	63.838	0.054104	0.050203	0.00030421	NaN	47.916	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1265800	+		58558	20639	41040	41103							0.09441745813751368
PLKQKRKN	8	Unmodified	_PLKQKRKN_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.29217529296875	2	506.324725	1010.6349	-0.84156	-0.0004261	0.48463	0.00024538	-0.35693	-0.00018072	506.3247987791396	21.66	0.6645	21.66	21.441	22.106	0					30	13	3	0	0	0	0.027866	1	665	665		20.482	2.1574	1	83896	+		58559	22371	41041	41104	63976	63976					0.1300055056231031
PLKRLNILL	9	Unmodified	_PLKRLNILL_					0	0	0		ENST00000368178.3_1_1:157716528-157737507:-|nuORF	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3343505859375	2	540.368601	1078.72265	-1.4149	-0.00076455	-3.2122	-0.0017358	-4.6271	-0.0025003	540.3669170656542	79.385	0.20629	79.213	79.15	79.356	-0.17226					7	4	2	0	0	0	0.024541	1	9813	9813		19.36	0	1	32414			58560	12883	41042	41105	63977	63977					0.18643751433069156
PLKTKDELL	9	Unmodified	_PLKTKDELL_					0	0	0		ENST00000509232.5_1_4:164057286-164087879:-|nuORF;nc|ENSG00000145414|Q96HR8-2|NAF1;ENSG00000145414|ENST00000274054|NAF1;ENST00000502973.1_1_4:164079476-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3214721679688	2	528.818607	1055.62266	-0.23621	-0.00012491	2.0599	0.0010893	1.8237	0.0009644	528.8191246765933	70.082	1.421	70.095	69.349	70.77	0.012421					99	36	4	0	0	0	0.6504	1	8422	8422		49.442	1.7842	1	12808000			58561	15801	41043	41106	63978	63978					0.09707469308614236
PLLAEHALL	9	Unmodified	_PLLAEHALL_					0	0	0		ENST00000557809.5_1_14:24583994-24584755:+|nuORF	ENST00000557809.5_1_14:24583994-24584755:+|nuORF	ENST00000557809.5_1_14:24583994-24584755:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.79461669921875	2	488.794935	975.575317	0.13584	6.6396E-05	-0.22178	-0.0001084	-0.085941	-4.2008E-05	488.794668321873	72.537	1.1515	72.537	72.211	73.362	0					74	28	4	0	0	0	0.60698	1	8825	8825		52.299	0	1	2638100			58562	16740	41044	41107	63979	63979					0.08655234828268021
PLLALLNNI	9	Unmodified	_PLLALLNNI_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79290771484375	2	490.810585	979.606617	-0.22084	-0.00010839	0.74743	0.00036684	0.52659	0.00025845	490.8108331722985	61.675	0.37659	61.675	61.492	61.868	0					15	9	2	0	0	0	0.02309	1	7127	7127		68.485	0	1	241340			58563	4787;6211	41045	41108	63980	63980					0.11599807862364742
PLLALLNNI	9	Unmodified	_PLLALLNNI_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.810585	979.606617	0.06389	3.1358E-05	1.2178	0.00059772	1.2817	0.00062908	490.81060369127226	61.95	0.48915	61.723	61.455	61.945	-0.22663	0.0036092	-0.00020338	NaN	68.485	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195590			58564	4787;6211	41045	41108							0.11599807862364742
PLLALLNNI	9	Unmodified	_PLLALLNNI_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.810585	979.606617	-0.45413	-0.00022289	1.1341	0.00055663	0.67998	0.00033374	490.81082299434854	61.63	0.44626	61.701	61.474	61.92	0.071125	-0.019024	-0.00028555	NaN	68.485	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220320			58565	4787;6211	41045	41108							0.11599807862364742
PLLALLNNI	9	Unmodified	_PLLALLNNI_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3;ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.810585	979.606617	0.12354	6.0633E-05	5.9997	0.0029447	6.1233	0.0030054	490.8158560088849	62.037	0.38925	61.78	61.588	61.978	-0.25725	0.060082	0.0044906	NaN	68.485	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85499			58566	4787;6211	41045	41108							0.11599807862364742
PLLCLLRLL	9	Unmodified	_PLLCLLRLL_					0	0	0			REV__ENSG00000185565|ENST00000490035|LSAMP	REV__ENSG00000185565|ENST00000490035|LSAMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7994384765625	2	527.34628	1052.67801	-0.46565	-0.00024556	0.53263	0.00028088	0.066982	3.5323E-05	527.3463459071957	83.998	0.76731	84.025	83.771	84.538	0.02655					36	17	3	0	0	0	0.024517	1	10417	10417		19.36	0	1	430380	+		58567	27772	41046	41109	63981	63981					0.15377604295372294
PLLCLRPL	8	Unmodified	_PLLCLRPL_					0	0	0			REV__chr22:23781409-23783411|156|23.87|0.26|6.53|+|1|MMP11,MMP11|1	REV__chr22:23781409-23783411|156|23.87|0.26|6.53|+|1|MMP11,MMP11|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	462.788598	923.562644	-0.40558	-0.0001877	1.1543	0.00053419	0.74871	0.0003465	462.78921640652754	23.231	0.12161	23.17	23.069	23.19	-0.060862					4	2	2	0	0	0	0.027866	1	878	878		69.093	3.1955	1	53640	+		58568	19426	41047	41110	63982	63982					0.09780500164367822
PLLCLRPL	8	Unmodified	_PLLCLRPL_					0	0	0			REV__chr22:23781409-23783411|156|23.87|0.26|6.53|+|1|MMP11,MMP11|1	REV__chr22:23781409-23783411|156|23.87|0.26|6.53|+|1|MMP11,MMP11|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.788598	923.562644	1.3867	0.00064175	3.354	0.0015522	4.7407	0.0021939	462.7894965925938	23.129	0.40968	22.938	22.758	23.167	-0.19117	-0.11568	0.00069636	NaN	69.093	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49322	+		58569	19426	41047	41110							0.09780500164367822
PLLCQKLK	8	Unmodified	_PLLCQKLK_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.80999755859375	2	471.793881	941.573209	0.59212	0.00027936	3.3421	0.0015768	3.9342	0.0018561	471.7954062491433	19.213	1.0346	19.052	18.836	19.871	-0.16079					33	20	3	0	0	0	0.027866	1	422	422		37.028	10.232	1	319100	+		58570	26221	41048	41111	63983	63983					0.1000848281881872
PLLCQKLK	8	Unmodified	_PLLCQKLK_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.791259765625	2	471.793881	941.573209	1.5566	0.00073437	2.47	0.0011653	4.0266	0.0018997	471.79502976701446	19.319	0.74209	19.085	18.632	19.374	-0.23345					35	14	4	0	0	0	1.0017	1	397	397		37.028	7.1869	1	266520	+		58571	26221	41048	41111	63984	63984					0.1000848281881872
PLLCSARLV	9	Unmodified	_PLLCSARLV_					0	0	0			REV__ENSG00000221829|ENST00000378643|FANCG	REV__ENSG00000221829|ENST00000378643|FANCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	486.288963	970.563372	-0.7661	-0.00037255	0.877	0.00042648	0.1109	5.3928E-05	486.2893700479707	44.081	0.65656	44.118	43.853	44.509	0.036903					35	18	3	0	0	0	0.024354	1	4127	4127		47.916	1.9636	1	521390	+		58572	28829	41049	41112	63985	63985					0.07691294813434979
PLLDEPAWV	9	Unmodified	_PLLDEPAWV_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3051147460938	2	520.276575	1038.5386	-0.43539	-0.00022652	-3.019	-0.0015707	-3.4544	-0.0017972	520.2750824135254	93.063	0.8485	93.071	92.672	93.52	0.0077286					34	19	3	0	0	0	0.024262	1	11801	11801		57.811	17.033	1	243440	+		58573	28019	41050	41113	63986	63986					0.020869382116870838
PLLDEPAWV	9	Unmodified	_PLLDEPAWV_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.30517578125	2	520.276575	1038.5386	-1.6484	-0.00085765	-1.274	-0.00066283	-2.9224	-0.0015205	520.2760780130186	93.233	0.95254	93.093	92.532	93.484	-0.13995					30	21	3	0	0	0	0.024262	1	11504	11504		57.811	18.558	1	77926	+		58574	28019	41050	41113	63987	63987					0.020869382116870838
PLLDEPAWV	9	Unmodified	_PLLDEPAWV_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.3048706054688	2	520.276575	1038.5386	0.28853	0.00015012	-2.7139	-0.001412	-2.4253	-0.0012618	520.2750891360347	93.225	0.86656	93.103	92.587	93.453	-0.12215					28	19	2	0	0	0	0.024294	1	11508	11508		29.15	0	1	65760	+		58575	28019	41050	41113	63988	63988					0.020869382116870838
PLLDLPGLTT	10	Unmodified	_PLLDLPGLTT_					0	0	0			REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.3052368164062	2	520.305332	1038.59611	-1.4143	-0.00073589	1.2395	0.00064493	-0.17482	-9.0957E-05	520.3058922379086	93.52	1.2196	93.38	92.829	94.049	-0.13995					70	27	4	0	0	0	1.0508	1	11517	11517		39.253	2.0937	1	1694100	+		58576	20853	41051	41114	63989	63989					0.0783578041725832
PLLDLPGLTT	10	Unmodified	_PLLDLPGLTT_					0	0	0			REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.30517578125	2	520.305332	1038.59611	0.09195	4.7842E-05	-0.52222	-0.00027171	-0.43027	-0.00022387	520.3049806038833	93.605	1.1323	93.461	92.958	94.09	-0.1441					56	25	3	0	0	0	0.85955	1	11516	11516		56.721	9.0637	1	1772100	+		58577	20853	41051	41114	63990	63990					0.0783578041725832
PLLDLSPRA	9	Unmodified	_PLLDLSPRA_					0	0	0			REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79290771484375	2	491.290017	980.565481	-0.47015	-0.00023098	0.84128	0.00041331	0.37113	0.00018233	491.2902238532348	61.835	0.62477	61.835	61.492	62.117	0					53	16	5	0	0	0	0.023181	1	7127	7127		60.972	9.6365	1	5853400	+		58578	29817	41052	41115	63991	63991					0.07442046822893644
PLLDLSPRA	9	Unmodified	_PLLDLSPRA_					0	0	0			REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	491.290017	980.565481	-0.19115	-9.3909E-05	0.55029	0.00027035	0.35914	0.00017644	491.2900530819231	62.024	0.58343	61.797	61.573	62.156	-0.22663	0.01949	5.2647E-05	NaN	60.972	47	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6027100	+		58579	29817	41052	41115							0.07442046822893644
PLLDLSPRA	9	Unmodified	_PLLDLSPRA_					0	0	0			REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.290017	980.565481	-0.67032	-0.00032932	1.0271	0.00050463	0.35683	0.00017531	491.2903224155859	61.772	0.6219	61.841	61.471	62.093	0.068596	0.06322	0.0005212	NaN	60.972	50	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5711900	+		58580	29817	41052	41115							0.07442046822893644
PLLDLSPRA	9	Unmodified	_PLLDLSPRA_					0	0	0			REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	REV__ENST00000272937.9_1_2:239147383-239147464:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.290017	980.565481	-0.63774	-0.00031331	0.61679	0.00030302	-0.020948	-1.0291E-05	491.29016034558373	61.969	0.90803	61.756	61.375	62.283	-0.21375	-0.021745	0.00011799	NaN	60.972	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3347300	+		58581	29817	41052	41115							0.07442046822893644
PLLEVWVGE	9	Unmodified	_PLLEVWVGE_					0	0	0		ENST00000607001.1_1_5:72793784-72793994:-|nuORF	ENST00000607001.1_1_5:72793784-72793994:-|nuORF	ENST00000607001.1_1_5:72793784-72793994:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.812744140625	2	521.2844	1040.55425	0.11659	6.0778E-05	-4.1518	-0.0021643	-4.0352	-0.0021035	521.2817421900706	41.214	0.56033	41.091	40.87	41.43	-0.12317					27	15	2	0	0	0	0.024405	1	3727	3727		27.882	9.5578	1	428400			58582	17571	41053	41116	63992	63992					0.0355922472876955
PLLFIIWI	8	Unmodified	_PLLFIIWI_					0	0	0			REV__nc|ENSG00000136275|Q9H7B7|PKD1L1-AS1	REV__nc|ENSG00000136275|Q9H7B7|PKD1L1-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7823791503906	2	507.822964	1013.63138	-0.12318	-6.2552E-05	0.68567	0.0003482	0.56249	0.00028565	507.8237835316821	42.633	0.14515	42.493	42.413	42.558	-0.13929					5	3	2	0	0	0	0.027866	1	3904	3904		43.626	16.933	1	55364	+		58583	36694	41054	41117	63993	63993					0.1251048773574439
PLLFLQVPRSN	11	Unmodified	_PLLFLQVPRSN_					0	0	0		ENSG00000164645|ENST00000297203|TEX47	ENSG00000164645|ENST00000297203|TEX47	ENSG00000164645|ENST00000297203|TEX47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.86077880859375	3	428.587195	1282.73976	-0.42419	-0.0001818	-2.4958	-0.0010697	-2.92	-0.0012515	428.58605057305977	21.023	0.67838	20.933	20.675	21.354	-0.090092					31	13	4	0	0	0	0.024732	1	628	628		8.4073	0	1	123360			58584	7302	41055	41118	63994	63994					0.10969627248232428
PLLFLVCSI	9	Unmodified	_PLLFLVCSI_					0	0	0			REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	REV__GGCX|p.T432Nfs*13|1|0.25|ENSG00000115486|chr2:85552560-85552560|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.306884765625	2	502.796089	1003.57763	-0.44499	-0.00022374	-3.1637	-0.0015907	-3.6087	-0.0018144	502.7934618904361	23.28	0.40595	23.1	22.836	23.242	-0.17989					18	8	3	0	0	0	0.024357	1	894	894		35.201	3.2459	1	120670	+		58585	22207	41056	41119	63995	63995					0.07597947241731617
PLLGVYLS	8	Unmodified	_PLLGVYLS_					0	0	0			REV__ENST00000502593.2_1_5:143131699-143132191:-|nuORF	REV__ENST00000502593.2_1_5:143131699-143132191:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.88616943359375	2	431.257654	860.500755	-0.69147	-0.0002982	2.5051	0.0010803	1.8136	0.00078214	431.25817250372313	22.386	0.52869	22.46	22.125	22.653	0.073954					18	10	3	0	0	0	0.027866	1	707	707		26.796	0	1	22051	+		58586	33936	41057	41120	63996	63996					0.06492472016896045
PLLHGKALE	9	Unmodified	_PLLHGKALE_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2768859863281	2	489.292559	976.570566	-0.45564	-0.00022294	0.25094	0.00012278	-0.2047	-0.00010016	489.29266026570474	76.608	0.60962	76.38	76.081	76.691	-0.22843					29	14	3	0	0	0	0.023417	1	9407	9407		90.777	21.99	1	227220	+		58587	20132	41058	41121	63997	63997					0.08134350685509162
PLLHGKALE	9	Unmodified	_PLLHGKALE_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.292559	976.570566	0.12171	5.9552E-05	-0.31184	-0.00015258	-0.19013	-9.3028E-05	489.29230726513015	76.432	0.37271	76.18	75.984	76.356	-0.25162	-0.093253	-0.00029186	NaN	90.777	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105590	+		58588	20132	41058	41121							0.08134350685509162
PLLHGKALE	9	Unmodified	_PLLHGKALE_					0	0	0			REV__ENSG00000047849|ENST00000683076|MAP4	REV__ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.292559	976.570566	0.249	0.00012183	-0.93058	-0.00045533	-0.68158	-0.00033349	489.2920756630035	76.23	0.41252	76.062	75.853	76.266	-0.16854	-0.2119	-0.00089735	NaN	90.777	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105810	+		58589	20132	41058	41121							0.08134350685509162
PLLHLLSGW	9	Unmodified	_PLLHLLSGW_					0	0	0		ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2608642578125	2	518.302927	1034.5913	-0.38988	-0.00020208	-3.1649	-0.0016404	-3.5548	-0.0018424	518.301492015624	39.748	0.19473	39.598	39.473	39.668	-0.1497					6	4	2	0	0	0	0.024443	1	3386	3386		44.531	26.207	1	83053			58590	3162	41059	41122	63998	63998					0.07538941065195104
PLLIHILM	8	Unmodified	_PLLIHILM_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.24951171875	2	475.298799	948.583045	0.19484	9.2609E-05	3.5323	0.0016789	3.7271	0.0017715	475.3002987791686	49.154	0.72464	49.001	48.719	49.443	-0.15277					41	19	3	0	0	0	0.027866	1	5103	5103		10.185	0	1	1441400	+		58591	24417	41060	41123	63999	63999					0.10669670824211153
PLLIHLRK	8	Unmodified	_PLLIHLRK_					0	0	0			REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF	REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2922668457031	2	495.334562	988.65457	-0.42798	-0.00021199	3.115	0.0015429	2.687	0.001331	495.33588663478184	68.462	0.27946	68.201	68.021	68.301	-0.26166					8	6	2	0	0	0	0.027866	1	7887	7887		20.482	0	1	86676	+		58592	34242	41061	41124	64000	64000					0.15978926573086483
PLLIHLRK	8	Unmodified	_PLLIHLRK_					0	0	0			REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF	REV__ENST00000518740.5_2_3:126326756-126328052:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2923278808594	2	495.334562	988.65457	0.43725	0.00021659	1.8437	0.00091326	2.281	0.0011298	495.33567153525115	68.328	0.19708	68.098	67.958	68.156	-0.23048					6	4	2	0	0	0	0.027866	1	7878	7878		28.254	0	1	101060	+		58593	34242	41061	41124	64001	64001					0.15978926573086483
PLLILSCNL	9	Unmodified	_PLLILSCNL_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-9|NOX4	REV__nc|ENSG00000086991|Q9NPH5-9|NOX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.8013916015625	2	493.291171	984.567789	-1.1354	-0.00056007	-2.0182	-0.00099558	-3.1536	-0.0015556	493.2904685093529	36.05	0.17067	36.007	35.931	36.101	-0.042454					5	4	2	0	0	0	0.024436	1	2827	2827		16.473	4.2663	1	100230	+		58594	20780	41062	41125	64002	64002					0.07488759236332498
PLLIVQAHS	9	Unmodified	_PLLIVQAHS_					0	0	0			REV__ENST00000602743.1_1_17:13801940-13972716:-|nuORF	REV__ENST00000602743.1_1_17:13801940-13972716:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.27703857421875	2	489.292559	976.570566	-0.025276	-1.2368E-05	-0.026759	-1.3093E-05	-0.052035	-2.5461E-05	489.29237039542505	76.414	0.52802	76.426	76.166	76.694	0.011635					21	12	2	0	0	0	0.024405	1	9357	9357		44.117	7.0883	1	183320	+		58595	35887	41063	41126	64003	64003					0.08134350685509162
PLLKIIKKK	9	Unmodified	_PLLKIIKKK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RGPD4|p.N729Ifs*15|1|0.12|ENSG00000196862|chr2:107861719-107861719|A/-|frameshift_variant;RGPD3|p.E1165*|1|0.51|ENSG00000153165|chr2:106424474-106424475|-/A|frameshift_variant;RGPD4|p.N1281Kfs*7|1|0.09|ENSG00000196862|chr2:107871840-107871841|-/A|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;ENSG00000153165|ENST00000409886|RGPD3	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2898559570312	2	540.896995	1079.77944	-0.60528	-0.00032739	3.1481	0.0017028	2.5428	0.0013754	540.8983677931174	53.411	0.17186	53.411	53.337	53.509	0					6	4	2	0	0	0	0.024541	1	5773	5773		7.6903	3.705	1	48213			58596	6328	41064	41127	64004	64004					0.24273798989588613
PLLLARLL	8	Unmodified	_PLLLARLL_					0	0	0		ENST00000564774.5_1_16:84212549-84214094:-|nuORF;nc|ENSG00000103168|Q15572-5|TAF1C;ENST00000564208.5_1_16:84212549-84215086:-|nuORF;nc|ENSG00000103168|Q15572|TAF1C;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572-4|TAF1C	ENST00000564774.5_1_16:84212549-84214094:-|nuORF;nc|ENSG00000103168|Q15572|TAF1C	nc|ENSG00000103168|Q15572|TAF1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7841796875	2	454.818213	907.621873	-0.31274	-0.00014224	0.56305	0.00025608	0.25031	0.00011385	454.81831403550296	84.158	0.76161	84.184	83.901	84.663	0.026558					39	17	3	0	0	0	0.027866	1	10495	10495		29.842	0	1	483100			58597	18138;16903	41065	41128	64005	64005					0.16436719450234705
PLLLDLLE	8	Unmodified	_PLLLDLLE_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.R1071Pfs*20|1|0.09|ENSG00000112159|chr6:89751446-89751447|-/G|frameshift_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7505798339844	2	463.283869	924.553185	-0.35027	-0.00016228	2.4239	0.0011229	2.0736	0.00096067	463.2849083071564	49.922	0.48405	49.922	49.694	50.178	0					28	13	3	0	0	0	0.027866	1	5192	5192		40.573	7.0796	1	258160			58598	3177	41066	41129	64006	64006					0.08789010359862459
PLLLFCVL	8	Unmodified	_PLLLFCVL_					0	0	0			REV__ENSG00000131183|ENST00000324417|SLC34A1	REV__ENSG00000131183|ENST00000324417|SLC34A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2681884765625	2	459.280075	916.545597	-0.042189	-1.9376E-05	4.2058	0.0019316	4.1636	0.0019123	459.28352807952314	75.014	0.24152	75.014	74.875	75.116	0					8	5	2	0	0	0	0.027866	1	9176	9176		16.705	0	1	47934	+		58599	23194	41067	41130	64007	64007					0.08398579558581787
PLLLFMSV	8	Oxidation (M)	_PLLLFM(Oxidation (M))SV_		PLLLFM(1)SV		PLLLFM(66)SV	0	0	1			REV__ENSG00000197632|ENST00000299502|SERPINB2	REV__ENSG00000197632|ENST00000299502|SERPINB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.26910400390625	2	468.267164	934.519776	0.17498	8.1936E-05	3.883	0.0018183	4.0579	0.0019002	468.2688869428645	56.318	1.0968	56.416	56.033	57.13	0.097893					82	30	4	0	0	0	0.71717	1	6211	6211		65.897	7.1155	1	4492700	+		58600	28333	41068	41131	64008	64008		836			0.04989685316309078
PLLLGQLVEV	10	Unmodified	_PLLLGQLVEV_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;ENST00000466514.5_1_7:150725553-150731828:+|nuORF	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7538452148438	2	540.8368	1079.65905	-1.1173	-0.0006043	2.471	0.0013364	1.3536	0.00073208	540.8379633658826	38.096	0.36797	37.875	37.686	38.054	-0.22149					19	10	2	0	0	0	0.03519	1	3135	3135		10.866	1.1599	1	210660			58601	9964	41069	41132	64009	64009					0.1224034620531711
PLLLLLVVT	9	Unmodified	_PLLLLLVVT_					0	0	0		ENSG00000204381|ENST00000375614|LAYN;nc|ENSG00000204381|Q6UX15|LAYN;nc|ENSG00000204381|Q6UX15-3|LAYN	ENSG00000204381|ENST00000375614|LAYN	ENSG00000204381|ENST00000375614|LAYN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.84027099609375	2	490.841354	979.668155	0.049117	2.4109E-05	-0.18358	-9.0111E-05	-0.13447	-6.6002E-05	490.84112315921334	105.88	0.5228	105.88	105.67	106.2	-0.0013123					33	18	3	0	0	0	0.60698	1	13545	13545		52.299	0	1	201160			58602	10337	41070	41133	64010	64010					0.17750739561643059
PLLLLLVVT	9	Unmodified	_PLLLLLVVT_					0	0	0		ENSG00000204381|ENST00000375614|LAYN;nc|ENSG00000204381|Q6UX15|LAYN;nc|ENSG00000204381|Q6UX15-3|LAYN	ENSG00000204381|ENST00000375614|LAYN	ENSG00000204381|ENST00000375614|LAYN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.8418884277344	2	490.841354	979.668155	-0.12549	-6.1596E-05	-0.3876	-0.00019025	-0.51309	-0.00025185	490.84112874761354	105.96	0.42726	105.96	105.75	106.18	0.00014496					24	15	2	0	0	0	0.97516	1	13521	13521		25.45	0	1	221550			58603	10337	41070	41133	64011	64011					0.17750739561643059
PLLLLPSP	8	Unmodified	_PLLLLPSP_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.7586975097656	2	425.275847	848.537141	0.2284	9.7131E-05	-3.5719	-0.0015191	-3.3435	-0.0014219	425.27424696973054	31.755	1.5572	31.515	31.186	32.743	-0.24006					58	37	2	0	0	0	0.027866	1	2126	2126		4.6817	0	1	242810	+		58604	20637	41071	41134	64012	64012					0.10681348913612965
PLLLLWGPL	9	Unmodified	_PLLLLWGPL_					0	0	0		ENST00000367204.5_1_1:204095788-204096322:+|nuORF	ENST00000367204.5_1_1:204095788-204096322:+|nuORF	ENST00000367204.5_1_1:204095788-204096322:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.3270263671875	2	511.325871	1020.63719	0.48015	0.00024551	1.947	0.00099554	2.4271	0.0012411	511.326731002724	96.077	1.1484	96.084	95.732	96.881	0.0065002					67	26	4	0	0	0	1.0281	1	12227	12227		14.664	1.7049	1	1445900			58605	12848	41072	41135	64013	64013					0.12769586247418374
PLLLLWGPL	9	Unmodified	_PLLLLWGPL_					0	0	0		ENST00000367204.5_1_1:204095788-204096322:+|nuORF	ENST00000367204.5_1_1:204095788-204096322:+|nuORF	ENST00000367204.5_1_1:204095788-204096322:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.32745361328125	2	511.325871	1020.63719	0.64627	0.00033046	2.0341	0.0010401	2.6804	0.0013705	511.326802953704	96.271	1.203	96.148	95.771	96.974	-0.12305					64	27	3	0	0	0	0.99355	1	11898	11898		21.702	0	1	973630			58606	12848	41072	41135	64014	64014					0.12769586247418374
PLLLPITLLS	10	Unmodified	_PLLLPITLLS_					0	0	0		ENST00000578618.5_1_18:5398654-5398756:-|nuORF	ENST00000578618.5_1_18:5398654-5398756:-|nuORF	ENST00000578618.5_1_18:5398654-5398756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.2903442382812	2	540.357368	1078.70018	-1.2081	-0.0006528	3.2395	0.0017505	2.0314	0.0010977	540.3599996485012	53.222	0.25272	53.318	53.266	53.518	0.095669					9	6	2	0	0	0	0.03519	1	5698	5698		17.365	6.4994	1	128610			58607	17132	41073	41136	64015	64015					0.16398107244822313
PLLLPLQPRCP	11	Unmodified	_PLLLPLQPRCP_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1;AP5B1|p.C829Lfs*32|1|0.48|ENSG00000254470|chr11:65778008-65778009|-/G|frameshift_variant;ENST00000316846.2_11:65545618-65547282:-|nuORF	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.9033508300781	3	416.249526	1245.72675	0.21762	9.0583E-05	0.73202	0.0003047	0.94963	0.00039528	416.24942210313765	32.175	0.56419	31.982	31.771	32.335	-0.19261					22	12	3	0	0	0	0.024762	1	2184	2184		29.551	0	1	83595			58608	102	41074	41137	64016	64016					0.11371472864493626
PLLLRLLAR	9	Unmodified	_PLLLRLLAR_					0	0	0			REV__ENST00000429764.5_1_2:85582731-85584092:+|nuORF	REV__ENST00000429764.5_1_2:85582731-85584092:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	533.1904296875	2	532.868769	1063.72298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.133	1	15.133	14.633	15.633	0								0	0	0	0.75445	1	7	7		8.8223	0	1		+		58609	32343	41075	41138	64017	64017					0.19367171152930496
PLLLRLLD	8	Unmodified	_PLLLRLLD_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.306884765625	2	476.813128	951.611703	-0.25263	-0.00012046	0.64841	0.00030917	0.39578	0.00018872	476.8131381903433	64.343	0.66825	64.088	63.677	64.346	-0.25562					29	16	3	0	0	0	0.027866	1	7297	7297		28.254	0	1	474190			58610	3426	41076	41139	64018	64018					0.13396111724989623
PLLLSHGSL	9	Unmodified	_PLLLSHGSL_					0	0	0			REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.2952880859375	2	468.779285	935.544017	1.5972	0.00074872	-0.8694	-0.00040756	0.72777	0.00034116	468.7786440497813	63.891	0.93779	63.891	63.485	64.422	0					54	25	3	0	0	0	0.024412	1	7430	7430		24.203	6.8378	1	597570	+		58611	35869	41077	41140	64019	64019					0.07366661794185347
PLLLSHGSL	9	Unmodified	_PLLLSHGSL_					0	0	0			REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	468.779285	935.544017	0.12442	5.8326E-05	-0.17017	-7.9771E-05	-0.045746	-2.1445E-05	468.77906311690197	64.174	0.55688	63.981	63.677	64.234	-0.19243	0.020111	0.00044333	NaN	24.203	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168180	+		58612	35869	41077	41140							0.07366661794185347
PLLLSHGSL	9	Unmodified	_PLLLSHGSL_					0	0	0			REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	REV__ENST00000602307.5_1_3:47454690-47454903:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.779285	935.544017	-0.45229	-0.00021202	0.48089	0.00022543	0.028601	1.3407E-05	468.77937908949514	64.195	0.39875	63.937	63.713	64.112	-0.25824	-0.024171	0.0010537	NaN	24.203	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143990	+		58613	35869	41077	41140							0.07366661794185347
PLLMQVIRYN	10	Unmodified	_PLLMQVIRYN_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.23907470703125	3	416.237398	1245.69036	0.13389	5.573E-05	2.0932	0.00087128	2.2271	0.00092701	416.23811644824536	41.923	2.0261	41.693	41.313	43.339	-0.23029					161	54	6	0	0	0	0.80817	1	3730	3730		60.118	1.872	1	28528000	+		58614	19175	41078	41141	64020	64020					0.07734595967781388
PLLNAIASIF	10	Unmodified	_PLLNAIASIF_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000496144.5_1_8:100515159-100589873:+|nuORF	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7802124023438	2	529.815867	1057.61718	0.4263	0.00022586	0.44522	0.00023588	0.87151	0.00046174	529.8168585979703	63.702	0.18414	63.443	63.276	63.46	-0.25824					5	4	2	0	0	0	0.03519	1	7186	7186		35.618	26.796	1	79238			58615	4619	41079	41142	64021	64021					0.09067790516792229
PLLNLIIYT	9	Unmodified	_PLLNLIIYT_					0	0	0		OR4M1|p.P286L|1|0.25|ENSG00000176299|chr14:19781179-19781179|C/T|missense_variant	OR4M1|p.P286L|1|0.25|ENSG00000176299|chr14:19781179-19781179|C/T|missense_variant	OR4M1|p.P286L|1|0.25|ENSG00000176299|chr14:19781179-19781179|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3192138671875	2	530.326068	1058.63758	-0.53357	-0.00028297	0.09722	5.1558E-05	-0.43635	-0.00023141	530.326042248461	93.561	0.58316	93.568	93.308	93.891	0.0066376					22	13	2	0	0	0	0.024323	1	11802	11802		44.117	0	1	221380			58616	18918	41080	41143	64022	64022					0.11060961176622186
PLLNPYTL	8	Unmodified	_PLLNPYTL_					0	0	0		ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2201232910156	2	465.768386	929.522219	-0.070588	-3.2878E-05	-4.1352	-0.001926	-4.2057	-0.0019589	465.76625254136945	33.854	0.73717	33.85	33.637	34.375	-0.0045624					43	18	3	0	0	0	0.027866	1	2461	2461		50.025	0	1	1287800			58617	2075	41081	41144	64023	64023					0.05463857045606346
PLLNQVESKER	11	Unmodified	_PLLNQVESKER_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.24688720703125	3	438.245498	1311.71466	-0.25193	-0.00011041	3.4689	0.0015202	3.2169	0.0014098	438.2471562212989	26.738	1.0588	26.715	26.283	27.342	-0.023088					94	26	6	0	0	0	0.98625	2	1394	1370;1394		39.873	9.956	1	8110600	+		58618	25112	41082	41145	64024;64025	64025					0.07127527655006816
PLLPGLHPLI	10	Unmodified	_PLLPGLHPLI_					0	0	0			REV__ENST00000396957.5_2_3:12881714-12883025:-|nuORF	REV__ENST00000396957.5_2_3:12881714-12883025:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3055419921875	2	535.342052	1068.66955	-0.76123	-0.00040752	-3.6097	-0.0019324	-4.3709	-0.00234	535.3398001877921	47.947	0.28291	47.671	47.492	47.775	-0.27598					10	7	2	0	0	0	0.03519	1	4727	4727		26.796	7.6926	1	140840	+		58619	31754	41083	41146	64026	64026					0.13796373650416172
PLLPIDRPG	9	Unmodified	_PLLPIDRPG_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27783203125	2	489.292559	976.570566	-0.11646	-5.6981E-05	-0.19957	-9.7649E-05	-0.31603	-0.00015463	489.29234063560466	76.391	0.52803	76.391	76.15	76.678	0					22	12	2	0	0	0	0.024323	1	9433	9433		53.351	27.901	1	230140	+		58620	20129	41084	41147	64027	64027					0.0813435068552053
PLLPLLGWL	9	Unmodified	_PLLPLLGWL_					0	0	0			REV__ENST00000427795.2_1_3:14188985-14189294:-|nuORF	REV__ENST00000427795.2_1_3:14188985-14189294:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.32659912109375	2	511.325871	1020.63719	0.38036	0.00019449	2.1636	0.0011063	2.544	0.0013008	511.32684664670245	96.235	1.1549	96.098	95.725	96.88	-0.13671					63	26	4	0	0	0	0.99355	1	11882	11882		21.702	6.0661	1	1446800	+		58621	32305	41085	41148	64028	64028					0.12769586247418374
PLLPLLSP	8	Unmodified	_PLLPLLSP_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.7581787109375	2	425.275847	848.537141	-0.024255	-1.0315E-05	-3.5686	-0.0015176	-3.5928	-0.001528	425.27431212948414	32.101	1.3164	31.943	31.451	32.767	-0.15772					50	31	2	0	0	0	0.027866	1	2122	2122		9.4706	0	1	162200			58622	8917	41086	41149	64029	64029					0.10681348913624333
PLLPPNELE	9	Unmodified	_PLLPPNELE_					0	0	0			REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2537231445312	2	511.281857	1020.54916	0.88295	0.00045143	-0.12192	-6.2335E-05	0.76103	0.0003891	511.78124572488315	54.691	0.14256	54.485	54.395	54.538	-0.20613					5	3	2	0	0	0	0.024319	1	5806	5806		39.253	5.0803	1	81354	+		58623	20360	41087	41150	64030	64030					0.03970920866140659
PLLPPPGFGF	10	Unmodified	_PLLPPPGFGF_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.812744140625	2	521.292028	1040.5695	-0.35734	-0.00018628	-0.72639	-0.00037866	-1.0837	-0.00056494	521.2889770060684	41.287	0.48922	41.287	41.016	41.505	0					20	13	3	0	0	0	0.03519	1	3709	3709		19.36	0	1	105400			58624	3684	41088	41151	64031	64031					0.05084136316622789
PLLPPPGFGF	10	Unmodified	_PLLPPPGFGF_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.292028	1040.5695	-0.081343	-4.2404E-05	4.9171	0.0025632	4.8358	0.0025208	521.2943691976116	41.738	0.18025	41.507	41.434	41.614	-0.2303	0.11026	0.0029847	NaN	19.36	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33897			58625	3684	41088	41151							0.05084136316622789
PLLPPRLLY	9	Unmodified	_PLLPPRLLY_					0	0	0		nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513	nc|ENSG00000163795|Q8N8E2-2|ZNF513	nc|ENSG00000163795|Q8N8E2-2|ZNF513	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7376098632812	2	541.342052	1080.66955	-1.2606	-0.0006824	-2.8376	-0.0015361	-4.0982	-0.0022185	541.3406375329876	66.579	0.29744	66.334	66.088	66.386	-0.24517					10	7	2	0	0	0	0.024541	1	7643	7643		25.45	7.1258	1	96631			58626	7145	41089	41152	64032	64032					0.13244373650422858
PLLPPRLLY	9	Unmodified	_PLLPPRLLY_					0	0	0		nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513	nc|ENSG00000163795|Q8N8E2-2|ZNF513	nc|ENSG00000163795|Q8N8E2-2|ZNF513	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	541.342052	1080.66955	-0.87508	-0.00047372	-4.5651	-0.0024713	-5.4401	-0.002945	541.3395135375926	66.178	0.19261	66.208	66.044	66.237	0.030106	-0.082888	-0.0013606	NaN	18.324	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179490			58627	7145	41089	41152							0.13244373650422858
PLLPPTSY	8	Unmodified	_PLLPPTSY_					0	0	0		ENST00000254940.9_1_16:69376017-69376176:+|nuORF	ENST00000254940.9_1_16:69376017-69376176:+|nuORF	ENST00000254940.9_1_16:69376017-69376176:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	444.24493408203125	2	444.247286	886.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.79	1	102.67	102.17	103.17	-0.12783								0	0	0	0.86453	1	12786	12786		29.842	0.69198	1				58628	11385	41090	41153	64033	64033					0.03223881637222803
PLLPTIES	8	Unmodified	_PLLPTIES_					0	0	0			REV__ENST00000579003.1_1_17:56408513-56408597:-|nuORF	REV__ENST00000579003.1_1_17:56408513-56408597:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2518005371094	2	435.252569	868.490584	-0.12255	-5.3339E-05	-3.1037	-0.0013509	-3.2263	-0.0014042	435.25111460879765	92.192	2.6749	92.07	91.036	93.711	-0.12242					106	62	3	0	0	0	1.0574	1	11323	11323		26.796	0	1	1311600	+		58629	35498	41091	41154	64034	64034					0.0510786429166501
PLLRIATTE	9	Unmodified	_PLLRIATTE_					0	0	0		nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7666931152344	2	507.303124	1012.5917	1.3714	0.0006957	-1.2651	-0.00064181	0.10622	5.3883E-05	507.3022259845427	17.324	0.252	17.17	17.007	17.259	-0.15403					6	4	2	0	0	0	0.024541	1	179	179		11.511	0	1	10533			58630	18176	41092	41155	64035	64035					0.08590315994365483
PLLRTYIDV	9	Unmodified	_PLLRTYIDV_					0	0	0			REV__nc|ENSG00000243989|Q03154-2|ACY1	REV__nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.31689453125	2	545.318774	1088.623	0.20032	0.00010924	-4.0607	-0.0022144	-3.8604	-0.0021051	545.3163945789998	101.48	0.89848	101.35	101	101.89	-0.13156					45	20	4	0	0	0	0.89441	1	12585	12585		32.812	3.6629	1	1038300	+		58631	28995	41093	41156	64036	64036					0.08222889028456848
PLLRWAVGS	9	Unmodified	_PLLRWAVGS_					0	0	0			REV__ENST00000377680.3_1_9:38621281-38621927:+|nuORF	REV__ENST00000377680.3_1_9:38621281-38621927:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.80078125	2	499.792727	997.5709	-0.32089	-0.00016038	-0.25892	-0.00012941	-0.57981	-0.00028978	500.29579417144157	31.279	0.33512	31.291	31.17	31.505	0.011799					15	7	3	0	0	0	0.024412	1	2080	2080		24.203	0	1	160210	+		58632	31381	41094	41157	64037	64037					0.07201770405367824
PLLSFTAIP	9	Unmodified	_PLLSFTAIP_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7924499511719	2	479.784036	957.553519	0.0091243	4.3777E-06	-4.1178	-0.0019756	-4.1086	-0.0019713	479.78188221619223	64.198	0.62983	63.94	63.713	64.343	-0.25805					33	15	3	0	0	0	0.024354	1	7267	7267		57.811	26.281	1	635540	+		58633	22911	41095	41158	64038	64038					0.07304430079705071
PLLSILISD	9	Unmodified	_PLLSILISD_					0	0	0			REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2621765136719	2	485.794601	969.574648	-0.22488	-0.00010925	-1.8622	-0.00090466	-2.0871	-0.0010139	485.79281946812586	24.233	0.22562	24.312	24.23	24.455	0.078344					6	4	2	0	0	0	0.024457	1	985	985		29.15	0	1	15664	+		58634	32047	41096	41159	64039	64039					0.08864395388582125
PLLSLDNSVTT	11	Unmodified	_PLLSLDNSVTT_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	580.3109741210938	2	580.313886	1158.61322	-0.083202	-4.8284E-05	-3.5989	-0.0020885	-3.6821	-0.0021368	580.3114871713644	74.166	0.74168	73.983	73.771	74.513	-0.18279					45	18	4	0	0	0	0.98904	1	8727	8727		39.253	2.8061	1	1802600			58635	9391	41097	41160	64040	64040					0.040256562324202605
PLLTLAGPAL	10	Unmodified	_PLLTLAGPAL_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.306884765625	2	483.305136	964.595718	-0.3233	-0.00015625	0.55084	0.00026623	0.22754	0.00010997	483.305275949229	81.507	0.97478	81.507	81.138	82.113	0					54	23	4	0	0	0	1.1329	1	10164	10164		27.882	3.3782	1	1187600	+		58636	26424	41098	41161	64041	64041					0.11200405488068554
PLLTLLLW	8	Unmodified	_PLLTLLLW_					0	0	0		ENST00000547526.1_1_12:57910914-57914246:-|nuORF	ENST00000547526.1_1_12:57910914-57914246:-|nuORF	ENST00000547526.1_1_12:57910914-57914246:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.765625	2	484.812596	967.61064	-0.19471	-9.4397E-05	1.5525	0.00075266	1.3578	0.00065826	484.81450583248227	101.58	0.43491	101.59	101.43	101.86	0.0090256					19	9	3	0	0	0	0.027866	1	12999	12999		20.482	0	1	48359			58637	16536	41099	41162	64042	64042					0.12553897356087873
PLLTYRTEL	9	Unmodified	_PLLTYRTEL_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.32666015625	2	553.316232	1104.61791	-0.48255	-0.000267	1.2529	0.00069327	0.77039	0.00042627	553.3166979854715	65.062	0.53751	65.099	64.817	65.355	0.037384					25	14	3	0	0	0	0.024535	1	7599	7599		12.207	0	1	423420	+		58638	29092	41100	41163	64043	64043					0.06978585165848017
PLLVALLCLFL	11	Unmodified	_PLLVALLCLFL_					0	0	0		TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant;ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant	TNK1|p.L536Pfs*10|1|0.29|ENSG00000174292|chr17:7388515-7388516|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	607.3771362304688	2	607.882696	1213.75084	0.16182	9.8368E-05	-0.334	-0.00020303	-0.17217	-0.00010466	608.3854378971303	97.73	1.4327	97.74	96.84	98.273	0.0099258					49	32	2	0	0	0	0.024733	1	12413	12413		17.365	0	1	347330			58639	8457	41101	41164	64044	64044					0.15251313298131208
PLLVAVIVV	9	Unmodified	_PLLVAVIVV_					0	0	0			REV__ENSG00000173535|ENST00000356864|TNFRSF10C	REV__ENSG00000173535|ENST00000356864|TNFRSF10C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.8204650878906	2	461.820421	921.62629	-0.045817	-2.1159E-05	-0.0077031	-3.5575E-06	-0.05352	-2.4717E-05	461.820352128119	97.573	1.001	97.573	97.147	98.148	0					46	22	4	0	0	0	0.93795	1	12443	12443		29.842	0	1	260530	+		58640	26781	41102	41165	64045	64045					0.16234183873120855
PLLVFIAQT	9	Unmodified	_PLLVFIAQT_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R;nc|ENSG00000006638|P21731-2|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2813415527344	2	501.305136	1000.59572	0.15678	7.8596E-05	3.8023	0.0019061	3.9591	0.0019847	501.3063957245441	76.625	0.38522	76.357	76.253	76.638	-0.26806					13	8	2	0	0	0	0.024436	1	9110	9110		30.504	0	1	146170			58641	799	41103	41166	64046	64046					0.09544405488099983
PLLVLTPFR	9	Unmodified	_PLLVLTPFR_					0	0	0		ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153626749-153627742:+|nuORF	ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENST00000491035.5_1_X:153626749-153628283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2738647460938	2	528.334227	1054.6539	0.37764	0.00019952	1.2051	0.0006367	1.5827	0.00083622	528.3360647087874	92.055	0.39074	92.064	91.875	92.265	0.009407					15	9	3	0	0	0	0.024325	1	11584	11584		50.025	9.4519	1	65321			58642	15450	41104	41167	64047	64047					0.12876087133349756
PLLVNLPTP	9	Unmodified	_PLLVNLPTP_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.74530029296875	2	482.29731	962.580068	3.6884	0.0017789	2.8883	0.001393	6.5768	0.003172	482.29852412537014	17.226	0.19769	17.226	17.102	17.3	0					6	3	2	0	0	0	0.024541	1	144	144		11.511	0	1	47071			58643	18235	41105	41168	64048	64048					0.09728118971031563
PLLVTYLL	8	Unmodified	_PLLVTYLL_					0	0	0		ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.2621154785156	2	466.296779	930.579005	-0.34148	-0.00015923	-3.7433	-0.0017455	-4.0848	-0.0019047	466.29484599252436	51.399	0.84803	51.25	50.792	51.64	-0.14885					50	23	3	0	0	0	0.027866	1	5356	5356		15.636	0	1	700490			58644	16998	41106	41169	64049	64049					0.11093904602137172
PLLVTYLL	8	Unmodified	_PLLVTYLL_					0	0	0		ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.296779	930.579005	0.15573	7.2616E-05	-3.8993	-0.0018182	-3.7436	-0.0017456	466.2947876008066	51.27	0.71342	51.27	50.92	51.633	0	0.030981	-9.4634E-05	NaN	15.636	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	952060			58645	16998	41106	41169							0.11093904602137172
PLLVTYLL	8	Unmodified	_PLLVTYLL_					0	0	0		ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.296779	930.579005	-0.20385	-9.5053E-05	-3.7389	-0.0017434	-3.9428	-0.0018385	466.29487756653816	51.11	0.75898	51.197	50.785	51.544	0.087009	-0.042179	5.4964E-05	NaN	15.636	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747470			58646	16998	41106	41169							0.11093904602137172
PLLVVPRPV	9	Unmodified	_PLLVVPRPV_					0	0	0			REV__ENST00000299824.5_1_20:37547336-37547519:+|nuORF	REV__ENST00000299824.5_1_20:37547336-37547519:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2926025390625	2	495.328945	988.643337	0.43911	0.0002175	2.4302	0.0012038	2.8694	0.0014213	495.3312892137298	68.447	0.31551	68.205	68.033	68.348	-0.24277					10	7	2	0	0	0	0.024466	1	7923	7923		33.516	0	1	83361	+		58647	30037	41107	41170	64050	64050					0.14856104478940324
PLLWRRRRSL	10	Unmodified	_PLLWRRRRSL_					0	0	0			REV__ENST00000439649.7_1_10:118030569-118032684:-|nuORF	REV__ENST00000439649.7_1_10:118030569-118032684:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.618896484375	3	451.617712	1351.83131	3.8913	0.0017574	1.5264	0.00068936	5.4178	0.0024468	451.6182505585021	17.922	0.64518	17.676	17.425	18.07	-0.24607					30	12	3	0	0	0	1.102	1	209	209		11.636	1.9898	1	48416	+		58648	31082	41108	41171	64051	64051					0.16946355456070705
PLLYATQIL	9	Unmodified	_PLLYATQIL_					0	0	0		ENST00000489520.2_1_12:66151931-66152630:-|nuORF	ENST00000489520.2_1_12:66151931-66152630:-|nuORF	ENST00000489520.2_1_12:66151931-66152630:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.3096923828125	2	516.310418	1030.60628	-0.1046	-5.4004E-05	0.046241	2.3875E-05	-0.058355	-3.0129E-05	516.3102536988604	103.6	0.75932	103.61	103.22	103.98	0.0054169					52	19	3	0	0	0	0.20967	1	13259	13259		87.754	22.289	1	769100			58649	15412	41109	41172	64052	64052					0.09220388142512093
PLLYDAEIH	9	Unmodified	_PLLYDAEIH_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3319702148438	2	535.779482	1069.54441	-0.85935	-0.00046042	-2.8719	-0.0015387	-3.7312	-0.0019991	535.7776858105216	23.278	0.40056	23.278	23.165	23.566	0					13	9	2	0	0	0	0.024466	1	903	903		18.324	0	1	33809			58650	7232	41110	41173	64053	64053					0.012420367233517027
PLLYDAEIH	9	Unmodified	_PLLYDAEIH_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.779482	1069.54441	-1.0748	-0.00057587	-3.0872	-0.001654	-4.162	-0.0022299	535.7776055755359	23.202	0.36351	23.278	23.07	23.434	0.076241	0.00022415	-0.00013578	NaN	18.324	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41310			58651	7232	41110	41173							0.012420367233517027
PLLYDSSLY	9	Unmodified	_PLLYDSSLY_					0	0	0			REV__ENST00000433425.3_2_X:134231131-134232201:-|nuORF	REV__ENST00000433425.3_2_X:134231131-134232201:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7725219726562	2	535.773865	1069.53318	-0.69305	-0.00037132	-0.79822	-0.00042767	-1.4913	-0.00079898	535.7733329535425	41.788	0.55768	41.558	41.274	41.832	-0.2303					44	14	4	0	0	0	0.60698	1	3685	3685		52.299	2.2746	1	3607700	+		58652	32405	41111	41174	64054	64054					0.001192146292396501
PLLYPASLEK	10	Unmodified	_PLLYPASLEK_					0	0	0		ENST00000371084.7_1_1:64095120-64095192:+|nuORF	ENST00000371084.7_1_1:64095120-64095192:+|nuORF	ENST00000371084.7_1_1:64095120-64095192:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8268432617188	2	565.826432	1129.63831	0.058132	3.2892E-05	-0.089438	-5.0606E-05	-0.031307	-1.7714E-05	565.8262347718664	101.06	0.99853	100.89	100.74	101.74	-0.17178					35	22	3	0	0	0	0.96965	1	12546	12546		49.442	2.9848	1	390680			58653	12982	41112	41175	64055	64055					0.0786775582566861
PLLYPEVFE	9	Unmodified	_PLLYPEVFE_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7645874023438	2	553.792058	1105.56956	-0.74675	-0.00041354	-1.525	-0.00084455	-2.2718	-0.0012581	553.7905279592878	26.099	0.196	25.863	25.72	25.916	-0.23603					6	4	2	0	0	0	0.024535	1	1310	1310		18.324	0	1	54666			58654	6550	41113	41176	64056	64056					0.021000915259492103
PLLYVIKNE	9	Unmodified	_PLLYVIKNE_					0	0	0		KCNG1|p.E399K|1|0.25|ENSG00000026559|chr20:51004386-51004386|C/T|missense_variant	KCNG1|p.E399K|1|0.25|ENSG00000026559|chr20:51004386-51004386|C/T|missense_variant	KCNG1|p.E399K|1|0.25|ENSG00000026559|chr20:51004386-51004386|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8314208984375	2	544.82115	1087.62775	0.014987	8.1653E-06	0.049832	2.715E-05	0.064819	3.5315E-05	544.8209936516058	71.25	0.88579	71.25	70.909	71.795	0					87	22	5	0	0	0	0.024412	1	8661	8661		31.955	0	1	3606000			58655	17786	41114	41177	64057	64057					0.08743773171227076
PLMAVPARYGF	11	Oxidation (M)	_PLM(Oxidation (M))AVPARYGF_		PLM(1)AVPARYGF		PLM(40)AVPARYGF	0	0	1		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.21881103515625	3	413.218115	1236.63251	-0.49302	-0.00020372	2.8892	0.0011939	2.3962	0.00099015	413.21930486742235	40.682	1.022	40.546	40.272	41.294	-0.13554					90	26	5	0	0	0	0.98542	1	3535	3535		40.058	8.4239	1	5383700			58656	10311	41115	41178	64058	64058		436			0.023663340423354384
PLMAVRRPAG	10	Unmodified	_PLMAVRRPAG_					0	0	0			REV__ENST00000474136.5_1_21:27382178-27543016:-|nuORF	REV__ENST00000474136.5_1_21:27382178-27543016:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.260986328125	2	534.310761	1066.60697	-0.33986	-0.00018159	0.69401	0.00037082	0.35415	0.00018923	534.3109456831006	24.453	0.46367	24.238	23.999	24.463	-0.2151					17	10	2	0	0	0	0.03519	1	1090	1090		63.306	0	1	299360	+		58657	33265	41116	41179	64059	64059					0.07632904310594313
PLMAVRRPAG	10	Unmodified	_PLMAVRRPAG_					0	0	0			REV__ENST00000474136.5_1_21:27382178-27543016:-|nuORF	REV__ENST00000474136.5_1_21:27382178-27543016:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2608032226562	2	534.310761	1066.60697	-0.55496	-0.00029652	1.3676	0.00073072	0.81263	0.0004342	534.3111273771731	24.216	0.42345	24.041	23.873	24.296	-0.17484					26	9	5	0	0	0	0.03519	1	1041	1041		53.351	30.309	1	295720	+		58658	33265	41116	41179	64060	64060					0.07632904310594313
PLMDMRQHEEY	11	Unmodified	_PLMDMRQHEEY_					0	0	0		ENST00000506393.5_1_5:140047926-140048692:+|nuORF;WDR55|p.D380*|1|0.17|ENSG00000120314|chr5:140669636-140669637|TG/-|frameshift_variant;ENSG00000120314|ENST00000358337|WDR55	ENST00000506393.5_1_5:140047926-140048692:+|nuORF	ENST00000506393.5_1_5:140047926-140048692:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.23797607421875	3	483.548083	1447.62242	-0.19405	-9.3831E-05	-2.1076	-0.0010191	-2.3017	-0.001113	483.54685757613146	40.21	0.48635	39.985	39.773	40.259	-0.225					29	12	4	0	0	0	0.02477	1	3473	3473		28.577	12.047	1	651420			58659	3804	41117	41180	64061	64061					-0.08348641745169516
PLMDMRQHEEY	11	Unmodified	_PLMDMRQHEEY_					0	0	0		ENST00000506393.5_1_5:140047926-140048692:+|nuORF;WDR55|p.D380*|1|0.17|ENSG00000120314|chr5:140669636-140669637|TG/-|frameshift_variant;ENSG00000120314|ENST00000358337|WDR55	ENST00000506393.5_1_5:140047926-140048692:+|nuORF	ENST00000506393.5_1_5:140047926-140048692:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	483.548083	1447.62242	-0.19293	-9.3289E-05	-2.326	-0.0011247	-2.5189	-0.001218	483.5468673885769	40.014	0.44777	39.864	39.668	40.116	-0.1497	-0.070592	-0.00025646	NaN	12.433	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591460			58660	3804	41117	41180							-0.08348641745169516
PLMEDAPQ	8	Unmodified	_PLMEDAPQ_					0	0	0		ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000478085.5_1_22:40800171-40802852:+|nuORF	ENSG00000100359|ENST00000248929|SGSM3	ENSG00000100359|ENST00000248929|SGSM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7610778808594	2	450.710211	899.405868	-0.071947	-3.2427E-05	-0.77765	-0.0003505	-0.8496	-0.00038292	450.7103605859737	38.988	0.10586	38.988	38.935	39.041	0					4	2	2	0	0	0	0.027866	1	3319	3319		8.8223	0	1	70943			58661	2190	41118	41181	64062	64062					-0.04785829516595186
PLMGDIHPMT	10	Unmodified	_PLMGDIHPMT_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.7315063476562	2	556.26737	1110.52019	-0.43307	-0.00024091	-3.0549	-0.0016993	-3.488	-0.0019402	556.265183278714	32.423	0.36213	32.266	32.121	32.484	-0.15772					11	8	2	0	0	0	0.03519	1	2201	2201		15.642	0	1	91442	+		58662	24738	41119	41182	64063	64063					-0.03065263026132925
PLMKNGAVQ	9	Unmodified	_PLMKNGAVQ_					0	0	0		nc|ENSG00000144029|P82675-2|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	nc|ENSG00000144029|P82675-2|MRPS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2847595214844	2	479.262945	956.511337	-0.20013	-9.5917E-05	3.9229	0.0018801	3.7227	0.0017842	479.2669284363336	77.575	0.2094	77.588	77.447	77.656	0.013504					8	4	3	0	0	0	0.024323	1	9488	9488		44.117	0	1	47539			58663	5712	41120	41183	64064	64064					0.03134131399679063
PLMLLFLL	8	Unmodified	_PLMLLFLL_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7696838378906	2	480.30355	958.592547	-0.034646	-1.6641E-05	4.0208	0.0019312	3.9862	0.0019146	480.3053016463474	40.731	0.71935	40.596	40.418	41.137	-0.13553					24	18	2	0	0	0	0.027866	1	3575	3575		16.705	0	1	150900			58664	6660	41121	41184	64065	64065					0.11159439109712821
PLMLVGMKVA	10	Unmodified	_PLMLVGMKVA_					0	0	0			REV__ENSG00000109576|ENST00000337664|AADAT	REV__ENSG00000109576|ENST00000337664|AADAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2758178710938	2	529.808674	1057.60279	-1.5186	-0.00080457	1.8291	0.00096908	0.31051	0.00016451	529.8092821819062	49.194	0.55285	49.268	48.95	49.503	0.074192					50	14	4	0	0	0	0.03519	1	4967	4967		40.573	3.4135	1	1794900	+		58665	21801	41122	41185	64066	64066					0.07629678772673287
PLMRQREL	8	Unmodified	_PLMRQREL_					0	0	0		ENSG00000107819|ENST00000393459|SFXN3;ENST00000487721.1_1_10:102796491-102797279:+|nuORF;ENST00000515736.2_1_5:174938457-174940595:+|nuORF;ENSG00000164466|ENST00000321442|SFXN1;ENST00000507823.5_1_5:174919260-174949462:+|nuORF	ENSG00000107819|ENST00000393459|SFXN3;ENSG00000164466|ENST00000321442|SFXN1	ENSG00000164466|ENST00000321442|SFXN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.244873046875	2	521.794943	1041.57533	-0.43519	-0.00022708	0.77418	0.00040396	0.33899	0.00017688	522.2952208854101	51.089	0.49796	50.94	50.657	51.155	-0.14916					22	13	2	0	0	0	0.027866	1	5338	5338		55.504	14.932	1	188460			58666	2860;7283	41123	41186	64067	64067					0.0562091155663893
PLMRVLFW	8	Unmodified	_PLMRVLFW_					0	0	0		ENST00000392350.7_1_2:190635870-190636011:-|nuORF	ENST00000392350.7_1_2:190635870-190636011:-|nuORF	ENST00000392350.7_1_2:190635870-190636011:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2672119140625	2	531.301873	1060.58919	0.20345	0.00010809	-3.5677	-0.0018955	-3.3643	-0.0017875	531.3005779844934	71.591	0.877	71.302	70.998	71.875	-0.28858					28	22	2	0	0	0	0.027866	1	8687	8687		28.254	2.8041	1	209180			58667	13412	41124	41187	64068	64068					0.06132189055711024
PLMSGLEKIL	10	Unmodified	_PLMSGLEKIL_					0	0	0			REV__ENSG00000134852|ENST00000513440|CLOCK	REV__ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7985229492188	2	550.822835	1099.63112	-0.82432	-0.00045405	-0.14051	-7.7395E-05	-0.96483	-0.00053145	550.8226387159773	53.809	1.2096	53.662	53.096	54.305	-0.14723					70	33	3	0	0	0	0.03519	1	5721	5721		45.972	0	1	1408600	+		58668	23488	41125	41188	64069	64069					0.08528699953581054
PLMSPSPCIVS	11	Oxidation (M)	_PLM(Oxidation (M))SPSPCIVS_		PLM(1)SPSPCIVS		PLM(62)SPSPCIVS	0	0	1			REV__ENSG00000139330|ENST00000266719|KERA	REV__ENSG00000139330|ENST00000266719|KERA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.782470703125	2	573.78031	1145.54607	-0.36546	-0.00020969	4.0611	0.0023302	3.6956	0.0021205	573.7827277938131	64.323	3.8502	64.131	62.696	66.546	-0.19243					217	96	4	0	0	0	0.72712	1	7346	7346		62.107	10.58	1	6137800	+		58669	23935	41126	41189	64070	64070		713			-0.020884135745518506
PLMWLPLD	8	Unmodified	_PLMWLPLD_					0	0	0		ENST00000461304.5_1_20:428607-428664:-|nuORF	ENST00000461304.5_1_20:428607-428664:-|nuORF	ENST00000461304.5_1_20:428607-428664:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.7828063964844	2	492.764789	983.515025	-0.49967	-0.00024622	3.7498	0.0018478	3.2502	0.0016016	492.76636533955946	78.043	2.0371	77.781	77.184	79.221	-0.26202					126	47	4	0	0	0	0.027866	1	9314	9314		49.211	0	1	861900			58670	14681	41127	41190	64071	64071					0.022608011735542277
PLNALDSF	8	Unmodified	_PLNALDSF_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.2469482421875	2	438.726718	875.438883	0.072833	3.1954E-05	0.99957	0.00043854	1.0724	0.00047049	438.7258507614331	26.318	0.41576	26.399	26.171	26.586	0.081293					13	9	2	0	0	0	0.027866	1	1301	1301		20.482	0	1	26608			58671	18644	41128	41191	64072	64072					-0.0038187940224361228
PLNKARLTL	9	Unmodified	_PLNKARLTL_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8154296875	2	513.326934	1024.63931	-0.93496	-0.00047994	-0.034597	-1.7759E-05	-0.96955	-0.0004977	513.3270897969181	44.978	0.72622	44.829	44.455	45.181	-0.1488					40	20	3	0	0	0	0.024381	1	4298	4298		37.159	9.2769	1	2419200	+		58672	23162	41129	41192	64073	64073					0.12798014985219197
PLNKKRDLP	9	Unmodified	_PLNKKRDLP_					0	0	0		ENST00000425217.5_2_12:117904834-117909018:-|nuORF	ENST00000425217.5_2_12:117904834-117909018:-|nuORF	ENST00000425217.5_2_12:117904834-117909018:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8318481445312	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.75397	1	9280	9280		42.396	3.3746	1	94452000			58673	14063	41130	41193	64074	64074					0.10849113496897189
PLNKPNYII	9	Unmodified	_PLNKPNYII_					0	0	0			REV__ENSG00000183431|ENST00000373019|SF3A3	REV__ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3319702148438	2	536.313492	1070.61243	-0.84974	-0.00045573	-1.6201	-0.0008689	-2.4699	-0.0013246	536.3123724286593	23.269	0.48973	23.269	23.033	23.523	0					24	11	3	0	0	0	0.024541	1	903	903		12.207	0	1	145240	+		58674	27573	41131	41194	64075	64075					0.07994906374028687
PLNNLLASKIW	11	Unmodified	_PLNNLLASKIW_					0	0	0		ENSG00000186297|ENST00000335625|GABRA5;ENSG00000011677|ENST00000370314|GABRA3	ENSG00000186297|ENST00000335625|GABRA5	ENSG00000186297|ENST00000335625|GABRA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.58245849609375	3	423.583562	1267.72886	-1.1815	-0.00050048	-2.0471	-0.00086714	-3.2287	-0.0013676	423.58256906206543	44.219	0.89843	44.074	43.461	44.359	-0.14471					70	25	4	0	0	0	1.0074	1	4187	4187		35.178	1.0917	1	2276000			58675	902	41132	41195	64076	64076					0.1057022487393624
PLNRKWVE	8	Unmodified	_PLNRKWVE_					0	0	0			REV__ENST00000259989.6_1_4:15962053-15964077:-|nuORF	REV__ENST00000259989.6_1_4:15962053-15964077:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8124389648438	2	521.295633	1040.57671	-0.22456	-0.00011706	-1.4204	-0.00074042	-1.6449	-0.00085748	522.2978818060709	42.429	0.61714	42.455	42.024	42.641	0.026012					24	17	3	0	0	0	0.027866	1	3786	3786		38.806	3.1879	1	157370	+		58676	29592	41133	41196	64077	64077					0.0580486891703913
PLNTVRNL	8	Unmodified	_PLNTVRNL_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.8895263671875	2	463.774534	925.534515	-0.54426	-0.00025241	-0.0087949	-4.0788E-06	-0.55305	-0.00025649	463.77448337910647	35.26	0.61652	35.073	34.835	35.452	-0.18675					25	15	3	0	0	0	0.027866	1	2670	2670		33.516	0	1	188120			58677	3147	41134	41197	64078	64078					0.06876893508649573
PLPAALQL	8	Unmodified	_PLPAALQL_					0	0	0		ENST00000511998.1_1_3:129034238-129036147:+|nuORF	ENST00000511998.1_1_3:129034238-129036147:+|nuORF	ENST00000511998.1_1_3:129034238-129036147:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.7533874511719	2	411.757821	821.501089	0.71471	0.00029429	-1.6773	-0.00069065	-0.96261	-0.00039636	411.7558975755807	22.669	0.36751	22.467	22.285	22.653	-0.20199					10	7	2	0	0	0	0.027866	1	781	781		14.664	0	1	8134.6			58678	15849	41135	41198	64079	64079					0.0831989173675538
PLPAPGSHPL	10	Unmodified	_PLPAPGSHPL_					0	0	0			REV__ENST00000423995.5_1_1:32705794-32705989:-|nuORF	REV__ENST00000423995.5_1_1:32705794-32705989:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2784118652344	2	493.276909	984.539266	-0.3339	-0.00016471	3.6147	0.001783	3.2808	0.0016183	493.2784954520519	20.146	1.7381	19.978	19.669	21.407	-0.16774					95	35	3	0	0	0	0.9856	1	517	517		47.916	7.343	1	867630	+		58679	32227	41136	41199	64080	64080					0.04637777651419128
PLPCAPVVGRA	11	Unmodified	_PLPCAPVVGRA_					0	0	0		ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2898559570312	2	540.305144	1078.59573	-0.56067	-0.00030293	1.1068	0.00059801	0.54614	0.00029508	540.3071513765796	53.497	0.24429	53.497	53.337	53.582	0					9	6	3	0	0	0	0.024733	1	5773	5773		24.203	1.1603	1	471860			58680	11464	41137	41200	64081	64081					0.05958082216443472
PLPCTLIID	9	Unmodified	_PLPCTLIID_					0	0	0			REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.77728271484375	2	492.775354	983.536154	0.11017	5.429E-05	3.1443	0.0015494	3.2544	0.0016037	492.77693176863676	36.595	0.72519	36.595	36.162	36.887	0					61	19	4	0	0	0	0.60698	1	2927	2927		52.299	4.6418	1	9733200	+		58681	33576	41138	41201	64082	64082					0.043727664824018575
PLPCTLIID	9	Unmodified	_PLPCTLIID_					0	0	0			REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	REV__ENST00000486051.5_1_1:8930279-8934967:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7774353027344	2	492.775354	983.536154	-0.61648	-0.00030378	3.7868	0.001866	3.1703	0.0015623	492.7772322271708	36.446	0.58902	36.404	36.101	36.69	-0.042454					66	15	5	0	0	0	0.4855	1	2883	2883		60.294	5.5176	1	8949700	+		58682	33576	41138	41201	64083	64083					0.043727664824018575
PLPGALSPL	9	Unmodified	_PLPGALSPL_					0	0	0		ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;nc|ENSG00000089159|P49023-3|PXN	ENSG00000089159|ENST00000637617|PXN	ENSG00000089159|ENST00000637617|PXN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.58380126953125	2	432.763104	863.511654	0.17907	7.7496E-05	1.8564	0.00080337	2.0355	0.00088087	432.76296867031397	46.877	0.69487	46.78	46.506	47.2	-0.096649					53	18	4	0	0	0	0.024357	1	4565	4565		35.201	15.841	1	705270			58683	1897	41139	41202	64084	64084					0.07443874391185545
PLPGSPESPLA	11	Unmodified	_PLPGSPESPLA_					0	0	0		nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141;ENST00000480419.1_1_2:179698902-179710451:-|nuORF	nc|ENSG00000163492|Q6ZP82-1|CCDC141	nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8422241210938	2	532.784764	1063.55498	-1.3114	-0.0006987	3.9995	0.0021309	2.6881	0.0014322	532.7849987594881	51.43	1.2543	51.517	50.82	52.074	0.087006					104	34	4	0	0	0	0.024752	1	5339	5339		32.812	12.816	1	1943200			58684	7088	41140	41203	64085	64085					0.025740193778119647
PLPGVRELSP	10	Unmodified	_PLPGVRELSP_					0	0	0			REV__ENST00000221543.9_1_19:50380840-50380921:+|nuORF	REV__ENST00000221543.9_1_19:50380840-50380921:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8422241210938	2	532.808574	1063.60259	-1.2845	-0.00068441	4.2192	0.002248	2.9347	0.0015636	532.8086195619529	51.156	0.65553	51.243	50.855	51.511	0.087009					30	17	3	0	0	0	0.03519	1	5339	5339		31.53	10.583	1	293440	+		58685	29346	41141	41204	64086	64086					0.07333718368658992
PLPHDSPLI	9	Unmodified	_PLPHDSPLI_					0	0	0		ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1	ENSG00000188554|ENST00000590996|NBR1	ENSG00000188554|ENST00000590996|NBR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.77630615234375	2	494.776742	987.538931	-0.21022	-0.00010401	0.11488	5.684E-05	-0.095341	-4.7173E-05	494.7766922289381	52.291	0.67017	52.383	51.967	52.638	0.091938					29	16	2	0	0	0	0.64155	1	5527	5527		50.025	0.48849	1	1542200			58686	9728	41142	41205	64087	64087					0.0446635793156247
PLPHDSPLI	9	Unmodified	_PLPHDSPLI_					0	0	0		ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1	ENSG00000188554|ENST00000590996|NBR1	ENSG00000188554|ENST00000590996|NBR1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	494.776742	987.538931	0.32524	0.00016092	-0.24875	-0.00012308	0.076495	3.7848E-05	494.7764791055983	52.479	0.69104	52.332	51.915	52.607	-0.14723	-0.030134	-0.00021188	NaN	50.025	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1466900			58687	9728	41142	41205							0.0446635793156247
PLPIAKVS	8	Unmodified	_PLPIAKVS_					0	0	0		ENSG00000185010|ENST00000360256|F8;F8|p.P1416S|1|0.5|ENSG00000185010|chrX:154929544-154929544|G/A|missense_variant	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.7613220214844	2	412.765646	823.516739	0.22117	9.129E-05	3.5809	0.0014781	3.802	0.0015694	412.76693437760764	48.272	0.69112	48.085	47.712	48.403	-0.18684					35	18	3	0	0	0	0.027866	1	4818	4818		47.916	5.4411	1	316620			58688	9396	41143	41206	64088	64088					0.09792178253815109
PLPIAKVS	8	Unmodified	_PLPIAKVS_					0	0	0		ENSG00000185010|ENST00000360256|F8;F8|p.P1416S|1|0.5|ENSG00000185010|chrX:154929544-154929544|G/A|missense_variant	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	412.765646	823.516739	-0.4867	-0.00020089	4.0857	0.0016864	3.599	0.0014855	412.7672512708869	48.157	0.83982	48.059	47.451	48.291	-0.097553	-0.076125	-5.9696E-05	NaN	47.916	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305990			58689	9396	41143	41206							0.09792178253815109
PLPIAKVS	8	Unmodified	_PLPIAKVS_					0	0	0		ENSG00000185010|ENST00000360256|F8;F8|p.P1416S|1|0.5|ENSG00000185010|chrX:154929544-154929544|G/A|missense_variant	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	412.765646	823.516739	-1.0618	-0.00043826	4.6852	0.0019339	3.6234	0.0014956	412.7673934827436	48.537	0.61021	48.261	48.004	48.615	-0.27598	0.12637	0.00043526	NaN	47.916	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251020			58690	9396	41143	41206							0.09792178253815109
PLPKVVSDPL	10	Unmodified	_PLPKVVSDPL_					0	0	0			REV__nc|ENSG00000116678|P48357-5|LEPR	REV__nc|ENSG00000116678|P48357-5|LEPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2754516601562	2	532.82115	1063.62775	-0.13318	-7.0961E-05	-0.41676	-0.00022206	-0.54994	-0.00029302	532.8208232260197	49.476	0.33188	49.476	49.324	49.656	0					12	8	2	0	0	0	0.03519	1	5141	5141		34.173	7.3764	1	117030	+		58691	22290	41144	41207	64089	64089					0.0984777317123644
PLPKYRGL	8	Unmodified	_PLPKYRGL_					0	0	0		ENST00000240123.11_2_8:22432250-22432496:+|nuORF	ENST00000240123.11_2_8:22432250-22432496:+|nuORF	ENST00000240123.11_2_8:22432250-22432496:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.28851318359375	2	472.28982	942.565087	-0.48925	-0.00023107	-4.2582	-0.0020111	-4.7475	-0.0022422	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.0574	1	11759	11759		20.482	0	1	45907000			58692	11280	41145	41208	64090	64090					0.09150671893701201
PLPLALERRVE	11	Unmodified	_PLPLALERRVE_					0	0	0			REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	REV__nc|ENSG00000270765|Q8NHY3-2|GAS2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	647.275390625	2	646.887887	1291.76122	0.95258	0.00061621	-2.6888	-0.0017393	-1.7362	-0.0011231	646.8863066952139	46.075	0.56059	46.075	45.852	46.412	0					28	15	3	0	0	0	0.024752	1	4499	4499		32.812	9.2897	1	147270	+		58693	37197	41146	41209	64091	64091					0.12701012276943402
PLPLFRAP	8	Unmodified	_PLPLFRAP_					0	0	0			REV__ENSG00000105550|ENST00000593756|FGF21	REV__ENSG00000105550|ENST00000593756|FGF21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.76776123046875	2	455.779088	909.543623	-0.20556	-9.369E-05	-4.1828	-0.0019064	-4.3883	-0.0020001	455.7770292580145	32.613	0.56436	32.455	32.163	32.728	-0.15772					21	13	2	0	0	0	0.027866	1	2274	2274		37.028	0	1	440860	+		58694	21536	41147	41210	64092	64092					0.08523286864988222
PLPLLLSI	8	Unmodified	_PLPLLLSI_					0	0	0			REV__ENSG00000172742|ENST00000641962|OR4D9;REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2554931640625	2	433.291497	864.568441	0.66737	0.00028916	-3.2341	-0.0014013	-2.5667	-0.0011121	433.29068681262186	102.95	0.37582	102.78	102.46	102.84	-0.17034					10	8	2	0	0	0	0.027866	1	12760	12760		20.482	0	1	344010	+		58695	27003;26704	41148	41211	64093	64093					0.13073921947716372
PLPLPLRSL	9	Unmodified	_PLPLPLRSL_					0	0	0			REV__SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|8|2|sense	REV__SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|8|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.8106689453125	2	503.326402	1004.63825	-0.23425	-0.0001179	-0.59639	-0.00030018	-0.83064	-0.00041808	503.32579422120017	69.076	1.227	69.092	68.607	69.834	0.015121					83	31	4	0	0	0	0.024535	1	8299	8299		18.324	0	1	1589200	+		58696	37650	41149	41212	64094	64094					0.13611800616320124
PLPLPTVL	8	Unmodified	_PLPLPTVL_					0	0	0		ENST00000569733.6_1_16:67576349-67576424:+|nuORF	ENST00000569733.6_1_16:67576349-67576424:+|nuORF	ENST00000569733.6_1_16:67576349-67576424:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.23822021484375	2	425.275847	848.537141	0.63492	0.00027002	-3.5319	-0.001502	-2.897	-0.001232	425.2742730371056	21.935	0.42799	21.746	21.531	21.959	-0.18894					14	8	2	0	0	0	0.027866	1	738	738		4.6817	0	1	59197			58697	17009	41150	41213	64095	64095					0.10681348913601596
PLPPAPPPTGA	11	Unmodified	_PLPPAPPPTGA_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2418518066406	2	507.784567	1013.55458	0.01093	5.5499E-06	-4.0578	-0.0020605	-4.0468	-0.0020549	507.7827435931048	36.205	0.474	35.988	35.812	36.286	-0.21661					19	12	2	0	0	0	0.024752	1	2851	2851		40.778	0	1	292360	+		58698	28008	41151	41214	64096	64096					0.04834644448601466
PLPPLPPKPW	10	Unmodified	_PLPPLPPKPW_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.7796630859375	2	571.342052	1140.66955	1.3352	0.00076288	1.1784	0.00067325	2.5136	0.0014361	571.3425601656231	36.33	0.49878	36.131	35.876	36.375	-0.19829					28	12	3	0	0	0	0.03519	1	2827	2827		17.365	1.7232	1	421500	+		58699	25395	41152	41215	64097	64097					0.10484373650410816
PLPPLPPKPW	10	Unmodified	_PLPPLPPKPW_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	571.342052	1140.66955	-1.5106	-0.00086309	3.9785	0.0022731	2.4678	0.00141	571.3442236478797	36.352	0.55525	36.352	36.129	36.685	0	0.11811	0.0016749	NaN	17.365	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433590	+		58700	25395	41152	41215							0.10484373650410816
PLPPLPPKPW	10	Unmodified	_PLPPLPPKPW_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.342052	1140.66955	-1.0852	-0.00062001	3.7808	0.0021601	2.6956	0.0015401	571.3441142437757	36.193	0.51974	36.151	35.864	36.383	-0.042454	-0.082756	0.0014491	NaN	17.365	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455980	+		58701	25395	41152	41215							0.10484373650410816
PLPPLPPKPW	10	Unmodified	_PLPPLPPKPW_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	571.342052	1140.66955	-1.1228	-0.00064149	3.5551	0.0020312	2.4323	0.0013897	571.3440043422132	36.333	0.58266	36.371	36.031	36.613	0.03804	0.137	0.0011912	NaN	17.365	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398430	+		58702	25395	41152	41215							0.10484373650410816
PLPPLPPKPW	10	Unmodified	_PLPPLPPKPW_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	571.342052	1140.66955	-0.18405	-0.00010515	2.7469	0.0015694	2.5628	0.0014642	571.3434893345001	36.416	0.5715	36.211	35.953	36.525	-0.20518	-0.022632	0.00026763	NaN	17.365	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547370	+		58703	25395	41152	41215							0.10484373650410816
PLPPLPPKPW	10	Unmodified	_PLPPLPPKPW_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	571.342052	1140.66955	0.32627	0.00018641	2.1221	0.0012125	2.4484	0.0013989	571.3432043853073	36.403	0.4695	36.186	35.981	36.45	-0.21661	-0.047403	-0.00044626	NaN	17.365	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511740	+		58704	25395	41152	41215							0.10484373650410816
PLPPPQVKNL	10	Unmodified	_PLPPPQVKNL_					0	0	0		ENST00000474780.1_1_3:19987557-19988503:-|nuORF	ENST00000474780.1_1_3:19987557-19988503:-|nuORF	ENST00000474780.1_1_3:19987557-19988503:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7979125976562	2	551.834591	1101.65463	-0.074617	-4.1176E-05	0.12402	6.8439E-05	0.049405	2.7263E-05	551.8341858122385	52.605	0.53104	52.697	52.445	52.976	0.091938					30	13	3	0	0	0	0.03519	1	5611	5611		38.806	6.8513	1	284600			58705	15040	41153	41216	64098	64098					0.10786881782428281
PLPPVRCK	8	Unmodified	_PLPPVRCK_					0	0	0			REV__EPHA8|p.N363Kfs*112|1|0.25|ENSG00000070886|chr1:22588977-22588978|-/A|frameshift_variant	REV__EPHA8|p.N363Kfs*112|1|0.25|ENSG00000070886|chr1:22588977-22588978|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2586669921875	2	455.270573	908.526593	0.30113	0.0001371	2.9633	0.0013491	3.2644	0.0014862	455.2720852088668	33.581	0.77425	33.638	33.279	34.054	0.056572					40	19	3	0	0	0	0.027866	1	2401	2401		33.516	15.191	1	227900	+		58706	36001	41154	41217	64099	64099					0.06867042987539662
PLPQPFKEP	9	Unmodified	_PLPQPFKEP_					0	0	0		nc|ENSG00000073150|Q96RD6-2|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2;ENSG00000073150|ENST00000395842|PANX2	nc|ENSG00000073150|Q96RD6-2|PANX2	nc|ENSG00000073150|Q96RD6-2|PANX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7703857421875	2	526.792392	1051.57023	-0.73719	-0.00038834	-3.775	-0.0019887	-4.5122	-0.002377	526.7903356036662	48.158	0.43962	48.06	47.817	48.257	-0.097553					22	11	3	0	0	0	0.024506	1	4726	4726		23.042	0	1	548150			58707	1502	41155	41218	64100	64100					0.046509309656585174
PLPRFKLKC	9	Unmodified	_PLPRFKLKC_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3433837890625	2	551.333704	1100.65286	3.2916	0.0018148	-1.12	-0.00061751	2.1716	0.0011973	551.3330451443206	17.509	0.39687	17.509	17.3	17.697	0					18	7	3	0	0	0	0.024541	1	151	151		25.45	6.0902	1	145650			58708	1332	41156	41219	64101	64101					0.10655549492821592
PLPRITDQY	9	Unmodified	_PLPRITDQY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2582397460938	2	551.798206	1101.58186	-0.12167	-6.7137E-05	-0.22451	-0.00012389	-0.34618	-0.00019102	551.7979431349548	63.605	0.608	63.412	63.109	63.717	-0.19243					30	15	2	0	0	0	0.024506	1	7214	7214		30.504	14.03	1	1253000			58709	6479	41157	41220	64102	64102					0.03513127989003806
PLPRLSVKKLL	11	Unmodified	_PLPRLSVKKLL_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	632.4178466796875	2	632.42919	1262.84383	0.76892	0.00048629	0.030941	1.9568E-05	0.79986	0.00050586	632.4288761442895	107.46	0.11405	107.46	107.39	107.51	-0.003479					7	3	3	0	0	0	1.1039	1	13752	13752		10.265	0.5596	1	3705400			58710	3706	41158	41221	64103	64103					0.22291954075762987
PLPRPRVQPKP	11	Unmodified	_PLPRPRVQPKP_					0	0	0		ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.9344787597656	3	428.934818	1283.78262	-0.64166	-0.00027523	-0.68763	-0.00029495	-1.3293	-0.00057018	428.934538966379	28.441	0.99908	28.196	27.882	28.881	-0.24524					79	23	5	0	0	0	0.84303	1	1674	1674		55.084	5.0504	1	2928600			58711	3582	41159	41222	64104	64104					0.15208442096309227
PLPRRLVPR	9	Unmodified	_PLPRRLVPR_					0	0	0			REV__ENST00000528086.5_1_11:35160721-35231518:+|nuORF	REV__ENST00000528086.5_1_11:35160721-35231518:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8297119140625	2	552.361642	1102.70873	-0.75335	-0.00041612	2.501	0.0013815	1.7477	0.00096534	552.3630763450053	48.985	0.32409	48.832	48.611	48.935	-0.15277					11	8	2	0	0	0	0.024487	1	5000	5000		31.955	6.5047	1	70428	+		58712	34486	41160	41223	64105	64105					0.1614851872463987
PLPRTHALAFV	11	Unmodified	_PLPRTHALAFV_					0	0	0		ENST00000497028.5_1_10:46159273-46167936:-|nuORF	ENST00000497028.5_1_10:46159273-46167936:-|nuORF	ENST00000497028.5_1_10:46159273-46167936:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3533325195312	2	611.358765	1220.70298	-0.32068	-0.00019605	-3.9143	-0.002393	-4.2349	-0.0025891	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.0521	1	12081	12081		24.519	0.99649	1	11218000			58713	15580	41161	41224	64106	64106					0.10145375422303005
PLPRTHALAFV	11	Unmodified	_PLPRTHALAFV_					0	0	0		ENST00000497028.5_1_10:46159273-46167936:-|nuORF	ENST00000497028.5_1_10:46159273-46167936:-|nuORF	ENST00000497028.5_1_10:46159273-46167936:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3505249023438	2	611.358765	1220.70298	-0.35919	-0.00021959	-4.2972	-0.0026271	-4.6564	-0.0028467	611.3559902690897	92.567	2.8634	92.445	90.59	93.453	-0.12241					191	67	5	0	0	0	1.0238	1	11476	11476		31.53	2.3598	1	4932800			58714	15580	41161	41224	64107	64107					0.10145375422303005
PLPSIETK	8	Unmodified	_PLPSIETK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7746887207031	2	442.758018	883.501483	-0.56781	-0.0002514	-1.9641	-0.00086964	-2.532	-0.001121	442.7571203527089	21.722	0.81524	21.793	21.451	22.266	0.071487					23	16	2	0	0	0	0.027866	1	646	646		50.025	2.1089	1	94708			58715	3841	41162	41225	64108	64108					0.05507266665949828
PLPSRRPT	8	Unmodified	_PLPSRRPT_					0	0	0			REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7608337402344	2	462.274701	922.534849	0.15413	7.1249E-05	2.817	0.0013022	2.9711	0.0013735	462.2762653956806	48.983	0.60386	48.983	48.795	49.399	0					30	16	2	0	0	0	0.027866	1	5039	5039		29.15	16.943	1	403720	+		58716	27018;36963	41163	41226	64109	64109					0.07048313228528968
PLPSSHVQR	9	Unmodified	_PLPSSHVQR_					0	0	0			REV__ENST00000427442.6_1_20:42164739-42164823:+|nuORF	REV__ENST00000427442.6_1_20:42164739-42164823:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.28839111328125	2	510.78289	1019.55123	-0.44388	-0.00022673	3.7373	0.0019089	3.2934	0.0016822	510.7845555183072	64.739	0.63057	64.505	64.137	64.768	-0.2345					42	15	4	0	0	0	0.024436	1	7402	7402		30.504	3.7075	1	1153800	+		58717	32296	41164	41227	64110	64110					0.04223394394625757
PLPSSHVQR	9	Unmodified	_PLPSSHVQR_					0	0	0			REV__ENST00000427442.6_1_20:42164739-42164823:+|nuORF	REV__ENST00000427442.6_1_20:42164739-42164823:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.78289	1019.55123	-0.60088	-0.00030692	3.6343	0.0018563	3.0334	0.0015494	510.7846470033686	64.737	0.85954	64.481	63.919	64.778	-0.25562	-0.0057105	-0.00017741	NaN	23.042	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1138400	+		58718	32296	41164	41227							0.04223394394625757
PLPTAAEPAR	10	Unmodified	_PLPTAAEPAR_					0	0	0			REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	REV__ENST00000381782.6_2_4:40751996-40752257:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8367919921875	2	511.785099	1021.55564	-1.0158	-0.00051988	1.1583	0.00059281	0.14249	7.2923E-05	511.785656039877	46.07	0.59084	45.918	45.719	46.31	-0.15157					25	16	2	0	0	0	0.03519	1	4492	4492		35.618	0	1	242610	+		58719	31526	41165	41228	64111	64111					0.045728588175165896
PLPTSTLSLQV	11	Unmodified	_PLPTSTLSLQV_					0	0	0		ENST00000399206.4_1_14:50472885-50473008:-|nuORF	ENST00000399206.4_1_14:50472885-50473008:-|nuORF	ENST00000399206.4_1_14:50472885-50473008:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.334716796875	2	578.334621	1154.65469	-1.235	-0.00071422	-4.0951	-0.0023683	-5.33	-0.0030825	578.3319849261422	105.17	0.42932	105.04	104.8	105.22	-0.13099					33	15	3	0	0	0	0.81602	1	13098	13098		56.721	3.3696	1	185850			58720	13638	41166	41229	64112	64112					0.08354836991770753
PLPTTSSGK	9	Unmodified	_PLPTTSSGK_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.2432861328125	2	444.245275	886.475997	0.49711	0.00022084	-0.2112	-9.3827E-05	0.2859	0.00012701	444.2453203047101	103.02	1.0446	102.85	102.55	103.59	-0.17034					50	25	5	0	0	0	0.80658	1	12833	12833		38.806	12.01	1	10788000			58721	8108	41167	41230	64113	64113					0.028217921435384596
PLPVMQLGPAM	11	Unmodified	_PLPVMQLGPAM_					0	0	0			REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.3043212890625	2	577.309038	1152.60352	-0.55782	-0.00032203	-0.91695	-0.00052936	-1.4748	-0.0008514	577.3083811979404	52.122	0.36921	52.004	51.796	52.165	-0.11875					15	9	2	0	0	0	0.024766	1	5412	5412		53.351	26.304	1	405520	+		58722	32548	41168	41231	64114	64114					0.033324734216876095
PLPVSSLVSL	10	Unmodified	_PLPVSSLVSL_					0	0	0		ENST00000415494.1_1_X:79965525-79965963:+|nuORF	ENST00000415494.1_1_X:79965525-79965963:+|nuORF	ENST00000415494.1_1_X:79965525-79965963:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3238525390625	2	506.307875	1010.6012	-0.81794	-0.00041413	2.3316	0.0011805	1.5136	0.00076637	506.30885568033244	39.383	0.4289	39.407	39.277	39.706	0.023727					14	11	2	0	0	0	0.03519	1	3307	3307		23.042	12.177	1	57889			58723	13876	41169	41232	64115	64115					0.09632084279917308
PLPWLATG	8	Unmodified	_PLPWLATG_					0	0	0		nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503-3|UGT1A3	nc|ENSG00000288702|P35503-3|UGT1A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.8890380859375	2	427.742171	853.469789	-0.30554	-0.00013069	-4.0163	-0.0017179	-4.3218	-0.0018486	427.7403623048281	22.489	1.1089	22.304	21.952	23.061	-0.18539					57	23	4	0	0	0	0.027866	1	756	756		12.207	0	1	1836000			58724	18823	41170	41233	64116	64116					0.037193187026559826
PLPYRLLSI	9	Unmodified	_PLPYRLLSI_					0	0	0			REV__ENST00000565552.1_1_16:85934636-85934810:+|nuORF	REV__ENST00000565552.1_1_16:85934636-85934810:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3119506835938	2	536.331685	1070.64882	-0.31988	-0.00017156	-4.4628	-0.0023935	-4.7826	-0.0025651	536.328955950417	59.18	0.25237	59.266	59.099	59.351	0.085686					9	6	2	0	0	0	0.023007	1	6651	6651		76.774	0	1	89927	+		58725	35278	41171	41234	64117	64117					0.11631783270763663
PLQAVVVLII	10	Unmodified	_PLQAVVVLII_					0	0	0		ENSG00000125255|ENST00000245312|SLC10A2	ENSG00000125255|ENST00000245312|SLC10A2	ENSG00000125255|ENST00000245312|SLC10A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.8084106445312	2	532.857535	1063.70052	-1.0818	-0.00057647	-1.7992	-0.00095872	-2.881	-0.0015352	532.8562774101749	46.002	0.22288	45.8	45.632	45.855	-0.20226					7	5	2	0	0	0	0.03519	1	4401	4401		35.618	0	1	134390			58726	4091	41172	41235	64118	64118					0.17121526964660916
PLQEPRSGP	9	Unmodified	_PLQEPRSGP_					0	0	0		ENST00000301488.7_1_11:67274206-67274308:-|nuORF	ENST00000301488.7_1_11:67274206-67274308:-|nuORF	ENST00000301488.7_1_11:67274206-67274308:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.7911682128906	2	490.761623	979.508694	-0.45725	-0.0002244	0.7863	0.00038589	0.32905	0.00016149	490.7615349187765	22.61	0.68989	22.425	22.094	22.784	-0.18539					20	14	2	0	0	0	0.024294	1	793	793		29.15	0	1	113310			58727	11930	41173	41236	64119	64119					0.018119992663855555
PLQLSPTPPKA	11	Unmodified	_PLQLSPTPPKA_					0	0	0			REV__ENSG00000107140|ENST00000336395|TESK1	REV__ENSG00000107140|ENST00000336395|TESK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.8351440429688	2	574.837331	1147.66011	0.33217	0.00019094	-4.4331	-0.0025483	-4.1009	-0.0023574	574.8350371067661	106.01	0.79631	105.85	105.56	106.35	-0.16132					78	35	4	0	0	0	1.0292	1	13192	13192		30.318	6.795	1	249170	+		58728	21654	41174	41237	64120	64120					0.09218560574208823
PLQNINSVQL	10	Unmodified	_PLQNINSVQL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.31884765625	2	563.316763	1124.61897	0.67517	0.00038034	3.059	0.0017232	3.7342	0.0021035	563.3182500288241	95.697	1.9295	95.575	94.38	96.31	-0.12251					89	44	5	0	0	0	0.54901	1	11839	11839		82.75	7.7072	1	2190700			58729	8540	41175	41238	64121	64121					0.06164799534758458
PLQNKRID	8	Unmodified	_PLQNKRID_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.3023986816406	2	492.285266	982.555979	-0.043759	-2.1542E-05	0.98515	0.00048498	0.94139	0.00046343	492.2860264950174	95.723	0.51521	95.723	95.476	95.991	0					21	11	2	0	0	0	0.027866	1	12166	12166		42.474	8.9589	1	123940	+		58730	21832	41176	41239	64122	64122					0.06400278537353188
PLQQKLLL	8	Unmodified	_PLQQKLLL_					0	0	0		ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7623291015625	2	476.813128	951.611703	2.097	0.00099987	-1.5863	-0.00075636	0.5107	0.00024351	476.8119185773841	64.029	0.79144	64.029	63.631	64.422	0					36	21	3	0	0	0	0.027866	1	7526	7526		39.021	0	1	436570			58731	9333	41177	41240	64123	64123					0.13396111724989623
PLQRILPSV	9	Unmodified	_PLQRILPSV_					0	0	0		ENSG00000196267|ENST00000682614|ZNF836	ENSG00000196267|ENST00000682614|ZNF836	ENSG00000196267|ENST00000682614|ZNF836	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2821960449219	2	511.821484	1021.62842	-0.26685	-0.00013658	0.11451	5.8608E-05	-0.15235	-7.7974E-05	511.82137864042056	62.155	1.0698	61.897	61.258	62.328	-0.25725					65	26	3	0	0	0	0.024506	1	6890	6890		23.042	0	1	439660			58732	9846	41178	41241	64124	64124					0.11846612610941065
PLQRSVEVD	9	Unmodified	_PLQRSVEVD_					0	0	0			REV__ENST00000478553.1_1_20:4764623-4764782:-|nuORF	REV__ENST00000478553.1_1_20:4764623-4764782:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.8573608398438	2	521.780013	1041.54547	-1.1698	-0.00061039	-3.3124	-0.0017284	-4.4822	-0.0023387	521.7781171143083	75.905	0.45185	75.905	75.659	76.11	0					29	11	3	0	0	0	0.024381	1	9337	9337		37.159	4.3467	1	368080	+		58733	33371	41179	41242	64125	64125					0.026362510922808724
PLQSGSFAR	9	Unmodified	_PLQSGSFAR_					0	0	0		ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2543640136719	2	481.756341	961.498129	0.10723	5.1657E-05	-1.2082	-0.00058204	-1.1009	-0.00053039	481.7560711108131	30.173	1.2636	30.023	29.668	30.931	-0.14952					56	29	3	0	0	0	0.023239	1	1977	1977		54.776	4.7518	1	711680			58734	12551	41180	41243	64126	64126					0.015840166119346577
PLQSGSFAR	9	Unmodified	_PLQSGSFAR_					0	0	0		ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.756341	961.498129	-0.98841	-0.00047617	3.6954	0.0017803	2.707	0.0013041	481.7579007656273	29.957	0.32279	29.957	29.814	30.137	0	-0.038275	0.0038105	NaN	54.776	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66908			58735	12551	41180	41243							0.015840166119346577
PLQSGSFAR	9	Unmodified	_PLQSGSFAR_					0	0	0		ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.756341	961.498129	-0.4906	-0.00023635	3.4763	0.0016747	2.9857	0.0014384	481.7581330675955	29.882	0.40488	29.89	29.677	30.082	0.0086689	-0.10526	0.0035993	NaN	54.776	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39799			58736	12551	41180	41243							0.015840166119346577
PLQSGSFAR	9	Unmodified	_PLQSGSFAR_					0	0	0		ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	ENST00000344532.7_1_13:49084869-49086005:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.756341	961.498129	-0.87686	-0.00042243	-0.27198	-0.00013103	-1.1488	-0.00055346	481.75651744570274	30.185	1.0102	30.006	29.4	30.41	-0.17818	0.010953	-1.2133E-05	NaN	54.776	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692320			58737	12551	41180	41243							0.015840166119346577
PLQVRDLL	8	Unmodified	_PLQVRDLL_					0	0	0			REV__ENST00000479111.5_1_1:75198970-75199828:+|nuORF	REV__ENST00000479111.5_1_1:75198970-75199828:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.2920227050781	2	477.292559	952.570566	-0.1925	-9.1877E-05	-0.014394	-6.8701E-06	-0.20689	-9.8747E-05	477.29245057855684	53.641	0.75879	53.444	53.163	53.922	-0.19739					71	22	5	0	0	0	0.845	1	5619	5619		55.504	2.1528	1	7688300	+		58738	33388	41181	41244	64127	64127					0.09238350685518526
PLRARNNQF	9	Unmodified	_PLRARNNQF_					0	0	0			REV__ENSG00000284484|ENST00000640173|CPHXL2	REV__ENSG00000284484|ENST00000640173|CPHXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.260986328125	2	558.307064	1114.59957	-0.42597	-0.00023782	2.6855	0.0014993	2.2595	0.0012615	558.308454105292	43.067	1.1554	42.927	42.595	43.751	-0.13929					48	31	2	0	0	0	0.024354	1	4090	4090		47.916	10.104	1	1562000	+		58739	29254	41182	41245	64128	64128					0.04685888034509844
PLRIIQFSL	9	Unmodified	_PLRIIQFSL_					0	0	0			REV__ENSG00000179817|ENST00000314254|MRGPRX4	REV__ENSG00000179817|ENST00000314254|MRGPRX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3029174804688	2	543.837134	1085.65972	-0.21472	-0.00011677	-0.11901	-6.472E-05	-0.33373	-0.00018149	543.8371895726026	74.595	0.54877	74.337	74.028	74.577	-0.25887					29	12	4	0	0	0	0.023239	1	9087	9087		96.19	16.739	1	451700	+		58740	27293	41183	41246	64129	64129					0.12031185645037112
PLRIKNWP	8	Unmodified	_PLRIKNWP_					0	0	0			REV__ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	REV__ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7745361328125	2	512.308544	1022.60253	-0.40794	-0.00020899	-2.8414	-0.0014557	-3.2493	-0.0016647	512.3065669729419	47.889	0.54626	47.613	47.305	47.851	-0.27598					17	14	2	0	0	0	0.027866	1	4732	4732		20.482	4.0087	1	266430	+		58741	25734	41184	41247	64130	64130					0.09213763159311839
PLRIPIKTL	9	Unmodified	_PLRIPIKTL_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.28857421875	2	525.855327	1049.6961	-0.52714	-0.0002772	0.24913	0.00013101	-0.27801	-0.00014619	525.8553849638174	77.021	1.079	76.793	76.568	77.647	-0.22813					31	25	2	0	0	0	0.024457	1	9491	9491		45.952	3.4775	1	500390	+		58742	29163	41185	41248	64131	64131					0.17324062541752028
PLRIPIKTL	9	Unmodified	_PLRIPIKTL_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.855327	1049.6961	-0.24444	-0.00012854	0.15334	8.0635E-05	-0.091097	-4.7904E-05	525.8552604703445	76.804	0.6998	76.636	76.352	77.052	-0.16854	-0.088022	0.00026364	NaN	45.952	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	648530	+		58743	29163	41185	41248							0.17324062541752028
PLRKKKAE	8	Unmodified	_PLRKKKAE_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2597961425781	2	485.313826	968.613099	0.10778	5.2307E-05	1.9955	0.00096846	2.1033	0.0010208	485.3143668056135	36.722	0.74223	36.722	36.263	37.005	0					29	19	3	0	0	0	0.027866	1	2900	2900		17.365	5.1581	1	254460			58744	1266	41186	41249	64132	64132					0.12753745813745354
PLRKLFKS	8	Unmodified	_PLRKLFKS_					0	0	0		ENST00000264870.7_1_6:6318908-6320947:-|nuORF	ENST00000264870.7_1_6:6318908-6320947:-|nuORF	ENST00000264870.7_1_6:6318908-6320947:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2850036621094	2	494.818744	987.622936	-0.89199	-0.00044138	1.4518	0.00071836	0.55977	0.00027698	494.81915810498634	51.878	0.39486	51.97	51.684	52.079	0.091938					16	10	2	0	0	0	0.027866	1	5414	5414		3.6843	0	1	93283			58745	11575	41187	41250	64133	64133					0.12862933819133104
PLRKPTTL	8	Unmodified	_PLRKPTTL_					0	0	0		ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000152076|Q96LY2|CCDC74B;ENST00000496704.1_1_2:130897130-130898075:-|nuORF;ENSG00000163040|ENST00000409856|CCDC74A;nc|ENSG00000163040|Q96AQ1|CCDC74A	ENSG00000152076|ENST00000409943|CCDC74B	ENSG00000152076|ENST00000409943|CCDC74B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7559814453125	2	463.295102	924.575651	0.16763	7.7663E-05	-0.10835	-5.0196E-05	0.059286	2.7467E-05	463.29485071745927	40.016	0.54349	40.016	39.771	40.314	0					30	14	3	0	0	0	0.027866	1	3533	3533		13.775	0	1	369460			58746	6246	41188	41251	64134	64134					0.1103465454812067
PLRKQHKR	8	Unmodified	_PLRKQHKR_					0	0	0			REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	REV__nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8349609375	2	531.835791	1061.65703	-0.3549	-0.00018875	-1.0792	-0.00057398	-1.4341	-0.00076273	531.8350745345408	104.36	0.50235	104.36	104.15	104.65	0.0031357					24	12	3	0	0	0	1.0574	1	13363	13363		26.796	2.5934	1	196620	+		58747	36935	41189	41252	64135	64135					0.1286677503073861
PLRLGLAAP	9	Unmodified	_PLRLGLAAP_					0	0	0			REV__ENSG00000088766|ENST00000378863|CRLS1	REV__ENSG00000088766|ENST00000378863|CRLS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2556457519531	2	454.28982	906.565087	-0.1338	-6.0782E-05	0.33372	0.0001516	0.19992	9.0822E-05	454.28978047219886	57.137	0.26547	57.232	57.127	57.392	0.095306					10	6	2	0	0	0	0.024443	1	6344	6344		12.959	0	1	71842	+		58748	20819	41190	41253	64136	64136					0.10806671893703879
PLRLLQLVKRV	11	Unmodified	_PLRLLQLVKRV_					0	0	0			REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF	REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.6361999511719	3	445.638001	1333.89217	-0.58172	-0.00025924	-3.8063	-0.0016962	-4.388	-0.0019555	445.6361941580526	39.023	1.1456	38.924	38.772	39.918	-0.098755					127	31	5	0	0	0	1.1062	1	3304	3304		9.6461	0.43434	1	4067900	+		58749	32672	41191	41254	64137	64137					0.23858447715633702
PLRLLQLVKRV	11	Unmodified	_PLRLLQLVKRV_					0	0	0			REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF	REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	445.6360168457031	3	445.638001	1333.89217	-0.79268	-0.00035325	-3.6523	-0.0016276	-4.445	-0.0019808	445.63625327080524	39.407	1.0337	39.431	39.242	40.275	0.023727					123	28	5	0	0	0	1.1092	1	3332	3332		8.7993	2.4784	1	3933600	+		58750	32672	41191	41254	64138	64138					0.23858447715633702
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__ENSG00000154305|ENST00000344922|MIA3	REV__ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.6361389160156	3	445.635598	1333.88496	0.21536	9.5974E-05	0.70475	0.00031406	0.92012	0.00041004	445.6358142382711	40.084	1.9182	40.084	39.733	41.652	0					203	53	5	0	0	0	1.1045	2	3550	3490;3550		10.104	0.8921	1	6583600	+		58751	24953	41192	41255	64139;64140	64140					0.2313771511521736
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__ENSG00000154305|ENST00000344922|MIA3	REV__ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	445.63604736328125	3	445.635598	1333.88496	0.56368	0.00025119	0.40242	0.00017933	0.9661	0.00043053	445.6356673138534	40.339	2.0526	40.227	39.792	41.845	-0.11222					213	56	4	0	0	0	1.1027	2	3525	3525;3538		10.587	1.7875	1	5905500	+		58752	24953	41192	41255	64141;64142	64141					0.2313771511521736
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__ENSG00000154305|ENST00000344922|MIA3	REV__ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.63604736328125	3	445.635598	1333.88496	-0.22348	-9.959E-05	1.2319	0.00054896	1.0084	0.00044937	445.6360074128349	40.438	2.0072	40.213	39.658	41.665	-0.225					176	52	4	0	0	0	1.1045	1	3479	3479		10.104	1.3046	1	5821200	+		58753	24953	41192	41255	64143	64143					0.2313771511521736
PLRLYPNL	8	Unmodified	_PLRLYPNL_					0	0	0		ENST00000399083.1_1_17:19061550-19062206:-|nuORF	ENST00000399083.1_1_17:19061550-19062206:-|nuORF	ENST00000399083.1_1_17:19061550-19062206:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7667236328125	2	493.295102	984.575651	0.35972	0.00017745	-3.7329	-0.0018414	-3.3731	-0.001664	493.29304491682	40.88	0.49645	40.88	40.623	41.119	0					19	13	2	0	0	0	0.027866	1	3598	3598		54.765	19.564	1	173060			58754	13634	41193	41256	64144	64144					0.08274654548119997
PLRNKSLQRI	10	Unmodified	_PLRNKSLQRI_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MSMS	OPSCC_39_ClassI_Rep-2	2	408.9222106933594	3	408.922689	1223.74624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.36	1	103.36	102.86	103.86	0.0054245								0	0	0	0.7553	1	13223	13223		27.047	0.98393	1				58755	8378	41194	41257	64145	64145					0.14331565199586294
PLRNKSLQRI	10	Unmodified	_PLRNKSLQRI_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MSMS	OPSCC_40_ClassI_Rep-2	5	408.92242431640625	3	408.922689	1223.74624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.48	1	103.35	102.85	103.85	-0.12783								0	0	0	0.73925	1	12880	12880		35.152	8.1047	1				58756	8378	41194	41257	64146	64146					0.14331565199586294
PLRPGLHPH	9	Unmodified	_PLRPGLHPH_					0	0	0		ENST00000399173.5_1_1:27949643-27950432:-|nuORF;ENST00000475472.5_1_1:27950117-27950432:-|nuORF	ENST00000399173.5_1_1:27949643-27950432:-|nuORF	ENST00000399173.5_1_1:27949643-27950432:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2516479492188	2	512.295968	1022.57738	-1.2605	-0.00064575	-3.1114	-0.001594	-4.3719	-0.0022397	512.2942393000753	20.409	0.82154	20.409	20.127	20.949	0					28	16	3	0	0	0	0.024541	1	573	573		24.203	4.8428	1	285170			58757	13636	41195	41258	64147	64147					0.0669970835674576
PLRPHRKP	8	Unmodified	_PLRPHRKP_					0	0	0			REV__ENSG00000230054|ENST00000423632|TEX53	REV__ENSG00000230054|ENST00000423632|TEX53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78173828125	2	500.811785	999.609017	-0.85426	-0.00042782	-1.0955	-0.00054866	-1.9498	-0.00097648	500.81102258591767	28.613	0.58588	28.613	28.318	28.904	0					19	13	2	0	0	0	0.027866	1	1677	1677		52.299	9.903	1	95247	+		58758	28891	41196	41259	64148	64148					0.10919701110697133
PLRPHRKP	8	Unmodified	_PLRPHRKP_					0	0	0			REV__ENSG00000230054|ENST00000423632|TEX53	REV__ENSG00000230054|ENST00000423632|TEX53	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.811785	999.609017	-1.0642	-0.00053298	-0.076249	-3.8187E-05	-1.1405	-0.00057117	500.81140450939546	29.243	0.60416	28.998	28.753	29.357	-0.24524	0.097204	0.00046825	NaN	33.516	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419150	+		58759	28891	41196	41259							0.10919701110697133
PLRPHRKP	8	Unmodified	_PLRPHRKP_					0	0	0			REV__ENSG00000230054|ENST00000423632|TEX53	REV__ENSG00000230054|ENST00000423632|TEX53	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.811785	999.609017	-0.51056	-0.00025569	-0.39568	-0.00019816	-0.90624	-0.00045386	500.811001957409	29.169	0.8087	28.997	28.681	29.49	-0.17258	0.096106	0.0001483	NaN	33.516	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451950	+		58760	28891	41196	41259							0.10919701110697133
PLRPHRKP	8	Unmodified	_PLRPHRKP_					0	0	0			REV__ENSG00000230054|ENST00000423632|TEX53	REV__ENSG00000230054|ENST00000423632|TEX53	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.811785	999.609017	-0.63625	-0.00031864	-0.73373	-0.00036746	-1.37	-0.0006861	500.8110968496521	29.144	0.59441	28.995	28.743	29.337	-0.14952	0.094441	-0.0001903	NaN	33.516	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560850	+		58761	28891	41196	41259							0.10919701110697133
PLRPLSSPL	9	Unmodified	_PLRPLSSPL_					0	0	0		ENST00000514191.5_1_14:73404686-73407184:+|nuORF	ENST00000514191.5_1_14:73404686-73407184:+|nuORF	ENST00000514191.5_1_14:73404686-73407184:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.25823974609375	2	490.300384	978.586216	0.71253	0.00034935	-3.5925	-0.0017614	-2.8799	-0.001412	490.30121748611236	105.67	0.2186	105.51	105.42	105.63	-0.16132					9	6	3	0	0	0	0.024294	1	13146	13146		29.15	0	1	59230			58762	15878	41197	41260	64149	64149					0.09606637202557522
PLRPPCLPP	9	Unmodified	_PLRPPCLPP_					0	0	0		ENST00000527545.1_1_8:144917610-144918087:-|nuORF	ENST00000527545.1_1_8:144917610-144918087:-|nuORF	ENST00000527545.1_1_8:144917610-144918087:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.2143249511719	2	495.28368	988.552807	0.1227	6.0771E-05	2.0228	0.0010019	2.1455	0.0010626	495.28512344147066	69.693	0.20809	69.442	69.358	69.566	-0.25063					6	4	2	0	0	0	0.024325	1	8093	8093		50.025	2.1089	1	88779			58763	16156	41198	41261	64150	64150					0.05807312159004141
PLRPPCLPP	9	Unmodified	_PLRPPCLPP_					0	0	0		ENST00000527545.1_1_8:144917610-144918087:-|nuORF	ENST00000527545.1_1_8:144917610-144918087:-|nuORF	ENST00000527545.1_1_8:144917610-144918087:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.28368	988.552807	-0.022488	-1.1138E-05	-1.6495	-0.00081698	-1.672	-0.00082812	495.2830895786104	69.892	0.24995	69.669	69.514	69.764	-0.22245	0.11334	-0.0018975	NaN	50.025	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50034			58764	16156	41198	41261							0.05807312159004141
PLRPRPEP	8	Unmodified	_PLRPRPEP_					0	0	0		ENST00000378679.7_1_5:132163197-132166462:-|nuORF	ENST00000378679.7_1_5:132163197-132166462:-|nuORF	ENST00000378679.7_1_5:132163197-132166462:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.28466796875	2	481.282526	960.550499	-2.0298	-0.00097689	1.5369	0.00073968	-0.49286	-0.00023721	481.28311661657835	51.967	1.0715	51.698	51.361	52.432	-0.26903					68	28	4	0	0	0	0.845	1	5377	5377		55.504	0.73953	1	3316400			58765	13244	41199	41262	64151	64151					0.06864599745551914
PLRRERSVAQ	10	Unmodified	_PLRRERSVAQ_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.57049560546875	3	404.570427	1210.68945	-0.01647	-6.6633E-06	0.20164	8.1578E-05	0.18517	7.4915E-05	404.57044879348234	30.154	1.1138	30.162	29.797	30.911	0.0086708					77	26	4	0	0	0	1.0814	1	1893	1893		35.178	0	1	2062900			58766	8130	41200	41263	64152	64152					0.09253517643082887
PLRRNSGHPT	10	Unmodified	_PLRRNSGHPT_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-6|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-6|SIK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3297729492188	2	567.809971	1133.60539	-1.5951	-0.00090569	-2.3546	-0.001337	-3.9497	-0.0022427	568.3115987332267	90.386	0.17231	90.386	90.297	90.469	0					5	3	2	0	0	0	0.03519	1	11421	11421		24.519	11.065	1	17166	+		58767	36837	41201	41264	64153	64153					0.043929865461677764
PLRRRPAR	8	Unmodified	_PLRRRPAR_					0	0	0			REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.3270263671875	2	511.328134	1020.64171	0.64627	0.00033046	-2.391	-0.0012226	-1.7447	-0.00089211	511.326802953704	96.271	1.203	96.148	95.771	96.974	-0.12305					64	27	3	0	0	0	1.0574	1	11909	11909		17.365	0.89182	1	973630	+		58768	29683	41202	41265	64154	64154					0.13221908233538215
PLRRWLSP	8	Unmodified	_PLRRWLSP_					0	0	0			REV__ENST00000546530.5_2_12:113573335-113574009:-|nuORF	REV__ENST00000546530.5_2_12:113573335-113574009:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.8099365234375	2	512.806168	1023.59778	3.2471	0.0016651	3.7763	0.0019365	7.0234	0.0036016	512.8079735690765	17.39	0.34738	17.39	17.25	17.598	0					16	6	3	0	0	0	1.0574	1	167	167		26.796	0	1	356120	+		58769	29634	41203	41266	64155	64155					0.08692879016552979
PLRSIAWSL	9	Unmodified	_PLRSIAWSL_					0	0	0			REV__ENST00000412872.3_1_6:68598425-68598952:-|nuORF	REV__ENST00000412872.3_1_6:68598425-68598952:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2799072265625	2	521.805834	1041.59712	0.093814	4.8953E-05	-0.90989	-0.00047478	-0.81607	-0.00042583	521.8055243432606	59.248	0.94997	59.334	58.957	59.906	0.085686					65	25	4	0	0	0	0.024447	1	6760	6760		32.812	3.6629	1	1481200	+		58770	32011	41204	41267	64156	64156					0.07798039576823612
PLRSPKNKIQA	11	Unmodified	_PLRSPKNKIQA_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.92236328125	3	417.922578	1250.7459	0.65766	0.00027485	-1.5961	-0.00066703	-0.9384	-0.00039218	417.9218501915897	104.54	0.91847	104.38	104.02	104.93	-0.16791					76	28	4	0	0	0	1.0621	1	13020	13020		21.78	2.5177	1	1607600	+		58771	24659	41205	41268	64157	64157					0.13056145479754377
PLRTQTGGTI	10	Unmodified	_PLRTQTGGTI_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11;nc|ENSG00000163517|Q96DB2-2|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.2958984375	2	522.29583	1042.57711	-0.16394	-8.5626E-05	0.34959	0.00018259	0.18564	9.6961E-05	522.2960171318222	103.8	0.5741	103.67	103.42	103.99	-0.12927					40	13	4	0	0	0	1.1267	1	12919	12919		29.15	0	1	764760			58772	7094	41206	41269	64158	64158					0.057522438462456194
PLRTQYDF	8	Unmodified	_PLRTQYDF_					0	0	0			REV__ENSG00000118946|ENST00000377918|PCDH17	REV__ENSG00000118946|ENST00000377918|PCDH17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.2789916992188	2	520.263999	1038.51345	-0.47427	-0.00024675	-1.6743	-0.00087106	-2.1485	-0.0011178	520.7654622634204	61.511	0.54067	61.511	61.255	61.796	0					22	13	2	0	0	0	0.027866	1	7163	7163		13.775	0	1	155430	+		58773	22430	41207	41270	64159	64159					-0.0042711659086762666
PLRTSPSR	8	Unmodified	_PLRTSPSR_					0	0	0		ENST00000288985.11_1_9:98638084-98643219:+|nuORF	ENST00000288985.11_1_9:98638084-98643219:+|nuORF	ENST00000288985.11_1_9:98638084-98643219:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2647399902344	2	457.264333	912.514114	-0.61065	-0.00027923	1.0535	0.00048173	0.44285	0.0002025	457.2646490789165	94.319	1.5384	94.181	93.616	95.155	-0.13779					79	35	4	0	0	0	1.0106	1	11614	11614		35.618	0	1	1504400			58774	11774	41208	41271	64160	64160					0.05435722848858404
PLRVLLLSL	9	Unmodified	_PLRVLLLSL_					0	0	0		ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2613525390625	2	512.349877	1022.6852	-0.18653	-9.5567E-05	-0.1766	-9.048E-05	-0.36312	-0.00018605	512.3496717533421	83.154	0.90293	83.016	82.48	83.382	-0.1386					39	20	3	0	0	0	0.024495	1	9987	9987		26.693	5.746	1	448100			58775	13608	41209	41272	64161	64161					0.1747666016748326
PLRVLLLSL	9	Unmodified	_PLRVLLLSL_					0	0	0		ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.349877	1022.6852	0.57065	0.00029237	-0.79399	-0.0004068	-0.22334	-0.00011443	512.349345917795	83.191	0.95024	82.98	82.443	83.393	-0.21159	-0.018	-0.00033043	NaN	19.997	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297070			58776	13608	41209	41272							0.1747666016748326
PLRVSAVI	8	Unmodified	_PLRVSAVI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.7767333984375	2	427.776545	853.538538	-0.50624	-0.00021656	0.87819	0.00037567	0.37195	0.00015911	427.7766922814189	33.281	0.79307	33.116	32.839	33.632	-0.16565					53	19	5	0	0	0	0.33369	2	2345	2345;2358		106.42	8.9425	1	1090300			58777	1012	41210	41273	64162;64163	64162					0.10590983002373378
PLRVSAVI	8	Unmodified	_PLRVSAVI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	427.776545	853.538538	0.15552	6.6526E-05	0.035742	1.529E-05	0.19126	8.1816E-05	427.77642560358686	33.336	0.60394	33.105	32.835	33.439	-0.23107	-0.015516	-0.00019702	NaN	106.42	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579300			58778	1012	41210	41273							0.10590983002373378
PLRVSAVI	8	Unmodified	_PLRVSAVI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	427.776545	853.538538	0.05358	2.292E-05	0.19722	8.4366E-05	0.2508	0.00010729	427.77649682850574	33.341	0.62383	33.14	32.855	33.479	-0.20019	0.020121	-5.8867E-05	NaN	106.42	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	743750			58779	1012	41210	41273							0.10590983002373378
PLRVVANL	8	Unmodified	_PLRVVANL_					0	0	0		ENST00000395811.9_1_17:17088549-17088822:+|nuORF	ENST00000395811.9_1_17:17088549-17088822:+|nuORF	ENST00000395811.9_1_17:17088549-17088822:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2658386230469	2	441.281995	880.549437	1.3085	0.00057742	-1.1422	-0.00050404	0.1663	7.3384E-05	441.28136192494355	59.689	1.0652	59.689	59.408	60.473	0					54	28	3	0	0	0	0.027866	1	6910	6910		19.36	0	1	888890			58780	13530	41211	41274	64164	64164					0.10438385376642145
PLRVVANL	8	Unmodified	_PLRVVANL_					0	0	0		ENST00000395811.9_1_17:17088549-17088822:+|nuORF	ENST00000395811.9_1_17:17088549-17088822:+|nuORF	ENST00000395811.9_1_17:17088549-17088822:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.281995	880.549437	0.088123	3.8887E-05	0.10991	4.8501E-05	0.19803	8.7388E-05	441.2819153873693	59.939	0.74302	59.739	59.427	60.17	-0.20016	0.029522	0.00027604	NaN	12.207	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1008300			58781	13530	41211	41274							0.10438385376642145
PLRWGGAQG	9	Unmodified	_PLRWGGAQG_					0	0	0			REV__ENST00000533592.2_1_11:501898-502162:-|nuORF	REV__ENST00000533592.2_1_11:501898-502162:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.2906494140625	2	471.251226	940.487899	-0.46426	-0.00021879	1.4193	0.00066883	0.95501	0.00045005	471.25136731490943	27.641	1.6544	27.485	26.544	28.198	-0.15664					93	39	4	0	0	0	0.024436	1	1575	1575		38.806	20.482	1	872240	+		58782	34610	41212	41275	64165	64165					0.015274536773858927
PLRWGPSH	8	Unmodified	_PLRWGPSH_					0	0	0			REV__ENST00000371959.7_1_X:112022880-112024247:-|nuORF	REV__ENST00000371959.7_1_X:112022880-112024247:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.24072265625	2	475.253769	948.492984	0.39465	0.00018756	1.4303	0.00067978	1.825	0.00086734	475.2543279135516	37.587	0.8078	37.587	37.195	38.003	0					33	22	2	0	0	0	0.027866	1	3033	3033		26.796	13.837	1	515070	+		58783	31185	41213	41276	64166	64166					0.01667757539996728
PLSAQRAVTV	10	Unmodified	_PLSAQRAVTV_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7667236328125	2	521.306198	1040.59784	-0.33691	-0.00017564	-1.1055	-0.00057631	-1.4424	-0.00075195	521.3058449396474	47.143	0.70281	47.047	46.682	47.385	-0.096649					28	18	2	0	0	0	0.03519	1	4625	4625		47.657	0	1	487330	+		58784	23370	41214	41277	64167	64167					0.07916834225898128
PLSASRSLPL	10	Unmodified	_PLSASRSLPL_					0	0	0		ENST00000307658.11_2_19:57922663-57924969:+|nuORF;ENST00000599867.1_1_19:57922663-57931056:+|nuORF	ENST00000307658.11_2_19:57922663-57924969:+|nuORF	ENST00000307658.11_2_19:57922663-57924969:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.8067626953125	2	520.808574	1039.60259	-1.422	-0.00074059	0.30872	0.00016078	-1.1133	-0.0005798	520.8085064889657	62.374	0.45673	62.374	62.313	62.769	0					17	12	2	0	0	0	0.37169	1	7259	7259		101.6	2.2258	1	916370			58785	12012	41215	41278	64168	64168					0.08437718368668357
PLSCCGLAR	9	Unmodified	_PLSCCGLAR_					0	0	0			REV__ENSG00000198883|ENST00000535214|PNMA5	REV__ENSG00000198883|ENST00000535214|PNMA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2709045410156	2	460.228048	918.441542	-0.44013	-0.00020256	-1.6652	-0.00076637	-2.1053	-0.00096893	460.2266890823815	43.413	0.68935	43.274	42.991	43.681	-0.13929					44	18	3	0	0	0	0.024436	1	4078	4078		10.866	9.7701	1	349840	+		58786	28507	41216	41279	64169	64169					-0.02094070540579196
PLSEKPITH	9	Unmodified	_PLSEKPITH_					0	0	0		ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	ENSG00000064651|ENST00000262461|SLC12A2	ENSG00000064651|ENST00000262461|SLC12A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2857360839844	2	511.287474	1020.5604	-0.51407	-0.00026284	-2.5371	-0.0012972	-3.0512	-0.00156	511.2861331183895	27.755	0.93769	27.742	27.427	28.365	-0.012983					64	23	4	0	0	0	0.77768	1	1535	1535		40.778	3.7497	1	2907200			58787	1278	41217	41280	64170	64170					0.05093742960275449
PLSEVFDTDL	10	Unmodified	_PLSEVFDTDL_					0	0	0			REV__ENSG00000186462|ENST00000373517|NAP1L2	REV__ENSG00000186462|ENST00000373517|NAP1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.2772827148438	2	568.279512	1134.54447	-1.6545	-0.00094023	2.8868	0.0016405	1.2323	0.00070027	568.2816328366963	80.91	0.80047	80.934	80.488	81.288	0.023903					33	19	2	0	0	0	0.03519	1	9955	9955		47.657	17.34	1	377100	+		58788	27858	41218	41281	64171	64171					-0.017420080672764016
PLSEVFDTDL	10	Unmodified	_PLSEVFDTDL_					0	0	0			REV__ENSG00000186462|ENST00000373517|NAP1L2	REV__ENSG00000186462|ENST00000373517|NAP1L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	568.279512	1134.54447	-1.0783	-0.00061278	2.6512	0.0015066	1.5729	0.00089387	568.2814665250951	80.811	0.80307	80.811	80.415	81.218	0	0.051936	-3.5527E-05	NaN	47.657	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374060	+		58789	27858	41218	41281							-0.017420080672764016
PLSEVFDTDL	10	Unmodified	_PLSEVFDTDL_					0	0	0			REV__ENSG00000186462|ENST00000373517|NAP1L2	REV__ENSG00000186462|ENST00000373517|NAP1L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	568.279512	1134.54447	0.10746	6.1068E-05	1.9145	0.001088	2.0219	0.001149	568.7816462628156	80.769	0.39887	80.532	80.328	80.727	-0.23784	-0.22713	-0.0008729	NaN	47.657	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64773	+		58790	27858	41218	41281							-0.017420080672764016
PLSFAQNQT	9	Unmodified	_PLSFAQNQT_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2744140625	2	503.253631	1004.49271	-0.13193	-6.6393E-05	-0.025117	-1.264E-05	-0.15705	-7.9034E-05	503.2533760260485	46.58	3.2579	46.631	45.998	49.256	0.051399					153	92	5	0	0	0	0.023635	1	4871	4871		76.774	2.5191	1	8106600	+		58791	24725	41219	41282	64172	64172					-0.009357069705288268
PLSFMHTV	8	Unmodified	_PLSFMHTV_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2379455566406	2	466.238938	930.463324	-0.25024	-0.00011667	-4.2723	-0.0019919	-4.5225	-0.0021086	466.23676122544344	30.683	1.8174	30.692	30.123	31.94	0.0086689					96	43	3	0	0	0	0.027866	1	1909	1909		33.516	3.674	1	340490	+		58792	19076	41220	41283	64173	64173					-0.004689425203650899
PLSGKLFMLFL	11	Unmodified	_PLSGKLFMLFL_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3723754882812	2	633.369952	1264.72535	0.56003	0.00035471	-1.8323	-0.0011605	-1.2723	-0.00080583	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.87847	1	12198	12198		52.937	4.9772	1	8480900	+		58793	36635	41221	41284	64174	64174					0.10357838775735217
PLSGLRRAEF	10	Unmodified	_PLSGLRRAEF_					0	0	0			REV__ENSG00000137507|ENST00000260061|LRRC32	REV__ENSG00000137507|ENST00000260061|LRRC32	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.3233032226562	2	573.324922	1144.63529	0.17561	0.00010068	-1.7445	-0.0010002	-1.5689	-0.00089949	573.32394098064	107.15	0.61134	107.15	106.86	107.47	0					28	15	2	0	0	0	1.1265	1	13781	13781		24.519	1.9395	1	179510	+		58794	23764	41222	41285	64175	64175					0.06875925491499402
PLSHLTIHVI	10	Unmodified	_PLSHLTIHVI_					0	0	0			REV__ENSG00000108602|ENST00000225740|ALDH3A1	REV__ENSG00000108602|ENST00000225740|ALDH3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.3141479492188	2	565.340041	1128.66553	-1.1416	-0.0006454	-4.0929	-0.0023139	-5.2345	-0.0029593	565.3377837397106	36.491	0.17115	36.529	36.374	36.545	0.038044					7	4	2	0	0	0	0.03519	1	2836	2836		30.504	0.18592	1	146420	+		58795	21752	41223	41286	64176	64176					0.1063428415668568
PLSIRSPVL	9	Unmodified	_PLSIRSPVL_					0	0	0			REV__ENST00000461779.5_1_19:53031147-53036178:+|nuORF	REV__ENST00000461779.5_1_19:53031147-53036178:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	491.30426025390625	2	491.30821	980.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.241	1	59.327	58.827	59.827	0.085682								0	0	0	0.48579	1	6678	6678		54.776	1.4249	1		+		58796	32886	41224	41287	64177	64177					0.11078923719617251
PLSKDTVGLA	10	Unmodified	_PLSKDTVGLA_					0	0	0			REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.78765869140625	2	500.787307	999.560061	0.49884	0.00024981	-0.4134	-0.00020703	0.085443	4.2789E-05	500.786854620409	72.146	0.842	72.146	71.94	72.782	0					32	20	2	0	0	0	0.83673	1	8802	8802		58.23	1.7961	1	4616200	+		58797	20049	41225	41288	64178	64178					0.06026323240428155
PLSKELVNL	9	Unmodified	_PLSKELVNL_					0	0	0			REV__ENST00000446006.1_1_7:64323382-64323847:+|nuORF	REV__ENST00000446006.1_1_7:64323382-64323847:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8047790527344	2	506.8055	1011.59645	-0.24986	-0.00012663	0.016506	8.3651E-06	-0.23335	-0.00011827	506.8052912073692	89.324	1.1131	89.324	89.02	90.133	0					61	26	4	0	0	0	0.28753	1	11290	11290		77.318	0	1	1221100	+		58798	32623	41226	41289	64179	64179					0.0911120013714708
PLSKELVNL	9	Unmodified	_PLSKELVNL_					0	0	0			REV__ENST00000446006.1_1_7:64323382-64323847:+|nuORF	REV__ENST00000446006.1_1_7:64323382-64323847:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8051452636719	2	506.8055	1011.59645	0.34369	0.00017418	-0.6984	-0.00035395	-0.35471	-0.00017977	506.80498873953235	89.323	0.92433	89.302	88.95	89.874	-0.021645					58	20	4	0	0	0	0.15366	1	11257	11257		98.629	13.469	1	1077300	+		58799	32623	41226	41289	64180	64180					0.0911120013714708
PLSKGPKLKP	10	Unmodified	_PLSKGPKLKP_					0	0	0			REV__nc|ENSG00000169220|O43566-4|RGS14	REV__nc|ENSG00000169220|O43566-4|RGS14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7864990234375	2	532.844959	1063.67537	-0.67324	-0.00035873	-4.0164	-0.0021401	-4.6897	-0.0024989	532.8414102336611	45.994	0.33387	45.733	45.557	45.891	-0.26118					14	8	2	0	0	0	0.03519	1	4362	4362		49.442	15.269	1	349410	+		58800	26335	41227	41290	64181	64181					0.1460747216206073
PLSLDAYCEL	10	Unmodified	_PLSLDAYCEL_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2792358398438	2	562.270632	1122.52671	0.73853	0.00041525	-1.4337	-0.00080613	-0.69519	-0.00039088	562.2700478579427	84.562	0.77213	84.403	83.801	84.573	-0.15869					43	17	4	0	0	0	0.03519	1	10252	10252		35.618	0	1	363390	+		58801	27265	41228	41291	64182	64182					-0.029650465937947956
PLSLQKQLLLL	11	Unmodified	_PLSLQKQLLLL_					0	0	0			REV__ENSG00000100985|ENST00000372330|MMP9	REV__ENSG00000100985|ENST00000372330|MMP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5928039550781	3	422.611229	1264.81186	-0.076839	-3.2473E-05	0.50451	0.00021321	0.42767	0.00018074	422.9455487561059	49.908	0.17007	49.989	49.884	50.054	0.08099					6	4	2	0	0	0	0.024782	1	5104	5104		31.634	20.538	1	42179	+		58802	21170	41229	41292	64183	64183					0.1900454160195295
PLSLRRRRGH	10	Unmodified	_PLSLRRRRGH_					0	0	0		ENST00000487896.2_2_2:86078353-86078431:-|nuORF	ENST00000487896.2_2_2:86078353-86078431:-|nuORF	ENST00000487896.2_2_2:86078353-86078431:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	625.3671264648438	2	624.381429	1246.7483	0.2017	0.00012593	-2.3544	-0.00147	-2.1527	-0.0013441	624.3798069627062	105.29	0.38515	105.29	105.06	105.45	0					23	9	3	0	0	0	0.03519	1	13507	13507		10.265	0	1	694610			58803	15379	41230	41293	64184	64184					0.13480038728062027
PLSLSSLGLL	10	Unmodified	_PLSLSSLGLL_					0	0	0			REV__ENST00000471941.5_1_10:45479206-45479773:+|nuORF	REV__ENST00000471941.5_1_10:45479206-45479773:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.77685546875	2	500.307875	998.601197	-0.94226	-0.00047142	3.2268	0.0016144	2.2846	0.001143	500.3088368221882	61.152	0.37106	60.975	60.793	61.164	-0.1761					16	8	3	0	0	0	0.03519	1	6844	6844		68.787	5.4806	1	206340	+		58804	33190	41231	41294	64185	64185					0.10184084279910621
PLSLTPLFL	9	Unmodified	_PLSLTPLFL_					0	0	0			REV__ENST00000487186.5_1_1:2132487-2144100:-|nuORF	REV__ENST00000487186.5_1_1:2132487-2144100:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.8070373535156	2	500.807511	999.600469	-1.3079	-0.00065499	1.6446	0.00082362	0.33672	0.00016863	500.8079761337237	107.13	0.42548	107	106.83	107.25	-0.1346					28	15	3	0	0	0	0.40179	1	13306	13306		65.803	0	1	191510	+		58805	33604	41232	41295	64186	64186					0.10065289630847474
PLSMKQLL	8	Unmodified	_PLSMKQLL_					0	0	0		ENSG00000004799|ENST00000005178|PDK4;ENST00000473301.1_1_7:95224333-95225617:-|nuORF	ENSG00000004799|ENST00000005178|PDK4	ENSG00000004799|ENST00000005178|PDK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2801208496094	2	465.278063	928.541574	1.4489	0.00067412	2.7644	0.0012862	4.2132	0.0019603	465.2792483869207	87.826	1.4105	87.845	87.515	88.925	0.018555					84	33	4	0	0	0	1.0338	1	11030	11030		31.955	3.7006	1	1753000			58806	746	41233	41296	64187	64187					0.07444490064881393
PLSPLNRLL	9	Unmodified	_PLSPLNRLL_					0	0	0			REV__ENST00000250340.8_1_19:51228779-51228962:+|nuORF	REV__ENST00000250340.8_1_19:51228779-51228962:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2827453613281	2	511.821484	1021.62842	-0.95171	-0.0004871	0.86728	0.00044389	-0.084424	-4.321E-05	511.8217619442023	62.092	1.1386	61.914	61.245	62.383	-0.17781					72	28	3	0	0	0	0.024541	1	6884	6884		19.36	6.4008	1	477720	+		58807	29493	41234	41297	64188	64188					0.11846612610952434
PLSQWSFPF	9	Unmodified	_PLSQWSFPF_					0	0	0			REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.814208984375	2	554.776742	1107.53893	0.50237	0.0002787	2.0341	0.0011285	2.5365	0.0014072	554.7778438741508	58.603	0.8927	58.361	58.044	58.936	-0.24165					36	21	2	0	0	0	0.024263	1	6421	6421		60.972	7.6205	1	2034100	+		58808	31948	41235	41298	64189	64189					-0.010536420684275072
PLSQWSFPF	9	Unmodified	_PLSQWSFPF_					0	0	0			REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	554.776742	1107.53893	0.33967	0.00018844	1.8748	0.0010401	2.2144	0.0012285	554.7777346498658	58.299	0.54971	58.299	57.982	58.531	0	0.0087716	-0.0005372	NaN	60.972	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1139400	+		58809	31948	41235	41298							-0.010536420684275072
PLSQWSFPF	9	Unmodified	_PLSQWSFPF_					0	0	0			REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.776742	1107.53893	-0.58261	-0.00032322	2.5507	0.0014151	1.9681	0.0010918	554.7781250979605	58.516	0.5452	58.329	58.066	58.611	-0.18705	0.038802	0.00021275	NaN	60.972	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1127100	+		58810	31948	41235	41298							-0.010536420684275072
PLSQWSFPF	9	Unmodified	_PLSQWSFPF_					0	0	0			REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	REV__ENST00000409153.5_3_2:198175381-198175450:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	554.776742	1107.53893	-0.085812	-4.7607E-05	2.3249	0.0012898	2.2391	0.0012422	554.7779887977248	58.15	0.54227	58.242	57.944	58.486	0.091217	-0.048809	-3.773E-05	NaN	60.972	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1031700	+		58811	31948	41235	41298							-0.010536420684275072
PLSRLLWRRLK	11	Unmodified	_PLSRLLWRRLK_					0	0	0		nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	nc|ENSG00000064687|Q8IZY2-2|ABCA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.97918701171875	3	479.977017	1436.90922	2.7661	0.0013277	2.0569	0.00098727	4.823	0.0023149	479.9779338781199	18.773	0.7935	18.53	18.224	19.018	-0.24256					35	15	3	0	0	0	1.1077	1	325	325		9.2118	0	1	169100			58812	1280	41236	41299	64190	64190					0.20824368321427755
PLSRLVEVI	9	Unmodified	_PLSRLVEVI_					0	0	0			REV__ENSG00000107929|ENST00000316157|LARP4B	REV__ENSG00000107929|ENST00000316157|LARP4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.3239135742188	2	513.321317	1024.62808	0.8563	0.00043956	3.1685	0.0016265	4.0248	0.002066	513.3227376101628	96.81	0.80267	96.687	96.396	97.198	-0.12305					40	17	3	0	0	0	0.43973	1	11994	11994		63.306	4.5243	1	452210	+		58813	21697	41237	41300	64191	64191					0.11675192891084407
PLSRYQLN	8	Unmodified	_PLSRYQLN_					0	0	0			REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	REV__nc|ENSG00000166833|Q8IVL1-11|NAV2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2879638671875	2	495.771991	989.529429	0.39747	0.00019705	-0.48439	-0.00024015	-0.086923	-4.3094E-05	495.77163451658856	50.986	0.72647	50.875	50.6	51.327	-0.11163					45	18	3	0	0	0	0.027866	1	5246	5246		65.803	0	1	1439900	+		58814	36891	41238	41301	64192	64192					0.034245896460333825
PLSSGDLVQV	10	Unmodified	_PLSSGDLVQV_					0	0	0			REV__nc|ENSG00000112655|Q13308-2|PTK7	REV__nc|ENSG00000112655|Q13308-2|PTK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.81884765625	2	507.776939	1013.53933	0.20997	0.00010662	0.096838	4.9172E-05	0.30681	0.00015579	507.77661685705255	68.559	1.2914	68.329	67.637	68.929	-0.23048					48	31	4	0	0	0	0.03519	1	7932	7932		74.255	29.878	1	706300	+		58815	36574	41239	41302	64193	64193					0.033097328607595955
PLSSPWDMMC	10	Unmodified	_PLSSPWDMMC_					0	0	0		ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	583.3768920898438	2	583.737588	1165.46062	-1.1496	-0.00067108	0.86149	0.00050289	-0.28813	-0.00016819	583.7380163145084	46.389	0.53325	46.389	46.09	46.623	0					23	14	2	0	0	0	0.03519	1	4563	4563		47.657	19.775	1	314180			58816	11482	41240	41303	64194	64194					-0.11548902031836406
PLSSPWDMMC	10	Unmodified	_PLSSPWDMMC_					0	0	0		ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	583.737588	1165.46062	-1.9495	-0.001138	1.4518	0.00084747	-0.49769	-0.00029052	583.7382660798348	46.479	0.4881	46.327	46.099	46.587	-0.15156	-0.05837	0.00074852	NaN	47.657	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269530			58817	11482	41240	41303							-0.11548902031836406
PLSSPWDMMC	10	Unmodified	_PLSSPWDMMC_					0	0	0		ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	583.737588	1165.46062	0.26493	0.00015465	-0.45535	-0.0002658	-0.19042	-0.00011115	583.7372491993095	46.389	0.48169	46.44	46.203	46.685	0.051395	0.054536	-0.001478	NaN	47.657	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241500			58818	11482	41240	41303							-0.11548902031836406
PLSSRLLDD	9	Unmodified	_PLSSRLLDD_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3158874511719	2	508.274564	1014.53457	-0.49985	-0.00025406	-0.057889	-2.9424E-05	-0.55774	-0.00028349	508.2744213105595	69.319	0.90075	69.335	69.014	69.914	0.015129					40	22	2	0	0	0	0.024523	1	8232	8232		21.96	7.2662	1	1679300			58819	6250	41241	41304	64195	64195					0.027888487179893673
PLSSSPVSP	9	Unmodified	_PLSSSPVSP_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7796325683594	2	435.732	869.449448	1.8876	0.00082247	0.78515	0.00034211	2.6727	0.0011646	435.73181748502526	36.419	0.51651	36.22	35.979	36.496	-0.19829					21	12	2	0	0	0	0.024262	1	2841	2841		23.042	7.4007	1	276010	+		58820	36472	41242	41305	64196	64196					0.009501032521939123
PLSSSPVSPGE	11	Unmodified	_PLSSSPVSPGE_					0	0	0			REV__nc|ENSG00000075702|O43379|WDR62	REV__nc|ENSG00000075702|O43379|WDR62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.286376953125	2	528.764029	1055.5135	-0.88101	-0.00046585	2.1654	0.001145	1.2844	0.00067912	528.7650395281755	30.25	0.49815	30.324	30.087	30.586	0.074314					20	11	2	0	0	0	0.024768	1	1884	1884		31.53	15.057	1	365570	+		58821	36472	41243	41306	64197	64197					-0.0120316138149974
PLSTPFLY	8	Unmodified	_PLSTPFLY_					0	0	0		ENST00000549133.1_1_12:57871038-57881193:+|nuORF	ENST00000549133.1_1_12:57871038-57881193:+|nuORF	ENST00000549133.1_1_12:57871038-57881193:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.232177734375	2	469.255111	936.49567	-1.3529	-0.00063485	-2.3842	-0.0011188	-3.737	-0.0017536	469.25407528184536	25.931	0.2777	25.768	25.588	25.865	-0.16331					15	6	3	0	0	0	0.027866	1	1255	1255		21.702	0	1	101780			58822	16564	41244	41307	64198	64198					0.024881681542865408
PLSVAAEVSA	10	Unmodified	_PLSVAAEVSA_					0	0	0			REV__ENSG00000110723|ENST00000265843|EXPH5	REV__ENSG00000110723|ENST00000265843|EXPH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2979431152344	2	472.258382	942.502212	-0.0083723	-3.9539E-06	4.1913	0.0019794	4.1829	0.0019754	472.2597784047891	33.085	0.28834	32.854	32.627	32.916	-0.23107					10	6	2	0	0	0	0.03519	1	2317	2317		53.351	3.9099	1	42281	+		58823	21871	41245	41308	64199	64199					0.028660613149895653
PLSVAPSNQL	10	Unmodified	_PLSVAPSNQL_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3239135742188	2	513.284931	1024.55531	0.84565	0.00043406	3.8356	0.0019687	4.6812	0.0024028	513.2869726350017	96.832	0.4006	96.709	96.44	96.84	-0.12305					12	8	2	0	0	0	0.03519	1	11994	11994		66.429	30.811	1	33689	+		58824	20396	41246	41309	64200	64200					0.044014390976599316
PLSVMLDL	8	Oxidation (M)	_PLSVM(Oxidation (M))LDL_		PLSVM(1)LDL		PLSVM(110)LDL	0	0	1		ENSG00000100296|ENST00000490103|THOC5;ENST00000442555.5_1_22:29904448-29924274:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2488098144531	2	452.246429	902.478305	-0.19035	-8.6084E-05	2.7774	0.0012561	2.5871	0.00117	452.24784923559713	33.402	1.5722	33.402	33.018	34.59	0					127	41	5	0	0	0	0.34196	2	2461	2375;2461		105.27	17.572	1	96955000			58825	2170	41247	41310	64201;64202	64202		80			0.023165045569840004
PLSVQLKPE	9	Unmodified	_PLSVQLKPE_					0	0	0		ENSG00000125826|ENST00000356286|RBCK1	ENSG00000125826|ENST00000356286|RBCK1	ENSG00000125826|ENST00000356286|RBCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7978515625	2	505.797675	1009.5808	-0.67459	-0.00034121	1.4087	0.00071252	0.73411	0.00037131	505.7982619122751	80.779	0.84344	80.779	80.415	81.258	0					47	20	3	0	0	0	0.70156	1	10050	10050		45.972	1.5951	1	1499200			58826	4144	41248	41311	64203	64203					0.07638913620087351
PLSVRTGGL	9	Unmodified	_PLSVRTGGL_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2812805175781	2	450.269084	898.523616	0.24383	0.00010979	-4.0157	-0.0018082	-3.7719	-0.0016984	450.26643254800086	50.959	0.61922	50.959	50.411	51.03	0					19	17	2	0	0	0	0.024354	1	5347	5347		30.504	21.033	1	482980	+		58827	26456	41249	41312	64204	64204					0.07029491134380805
PLSVSSFILPH	11	Unmodified	_PLSVSSFILPH_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	599.8272094726562	2	598.837331	1195.66011	-0.40956	-0.00024526	1.2788	0.00076582	0.86929	0.00052056	599.34024284794	82.337	0.25958	82.156	81.941	82.201	-0.18079					8	5	2	0	0	0	0.024759	1	9910	9910		34.173	3.8548	1	67411			58828	5077	41250	41313	64205	64205					0.07010560574235569
PLSVWLALL	9	Unmodified	_PLSVWLALL_					0	0	0		ENST00000296873.11_1_5:132093085-132093202:-|nuORF	ENST00000296873.11_1_5:132093085-132093202:-|nuORF	ENST00000296873.11_1_5:132093085-132093202:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8283996582031	2	506.315503	1010.61645	-0.38688	-0.00019588	-4.3287	-0.0021917	-4.7156	-0.0023876	506.3130059101946	67.186	0.905	67.186	66.926	67.831	0					32	22	3	0	0	0	0.024354	1	8066	8066		38.806	0	1	645600			58829	11856	41251	41314	64206	64206					0.11156995867736441
PLTIFHDL	8	Unmodified	_PLTIFHDL_					0	0	0		ENST00000503602.6_1_12:1086253-1099126:-|nuORF;ENST00000545629.5_1_12:1086082-1099186:-|nuORF	ENST00000503602.6_1_12:1086253-1099126:-|nuORF	ENST00000503602.6_1_12:1086253-1099126:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.79193115234375	2	478.26601	954.517468	-0.76107	-0.00036399	4.1517	0.0019856	3.3906	0.0016216	478.267809122159	50.967	0.86174	51.054	50.716	51.577	0.087006					63	23	5	0	0	0	0.027866	1	5261	5261		18.324	0	1	1570200			58830	15694	41252	41315	64207	64207					0.038389729028381225
PLTIKGKSVK	10	Unmodified	_PLTIKGKSVK_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	nc|ENSG00000075292|Q14966-3|ZNF638	MSMS	OPSCC_40_ClassI_Rep-2	5	536.1649780273438	2	535.850242	1069.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.972	1	15.764	15.264	16.264	-0.20777								0	0	0	0.77833	1	43	43		10.866	3.1753	1				58831	1552;18082;38204	41253	41316	64208	64208					0.15387454816504942
PLTITSSL	8	Unmodified	_PLTITSSL_					0	0	0		ENSG00000109846|ENST00000650687|CRYAB	ENSG00000109846|ENST00000650687|CRYAB	ENSG00000109846|ENST00000650687|CRYAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.83917236328125	2	416.244744	830.474934	-0.56226	-0.00023404	2.3649	0.00098437	1.8026	0.00075033	416.2455567742371	28.658	0.72286	28.489	28.131	28.854	-0.16897					46	16	4	0	0	0	0.027866	1	1656	1656		12.207	0	1	1102700			58832	3001	41254	41317	64209	64209					0.052915777746079584
PLTKQKEVL	9	Unmodified	_PLTKQKEVL_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3292236328125	2	528.326599	1054.63865	0.15921	8.4116E-05	3.4551	0.0018254	3.6143	0.0019095	528.3282826111483	77.79	2.7414	77.579	77.165	79.907	-0.21087					194	65	5	0	0	0	0.56934	1	9631	9631		54.776	1.8396	1	9107700	+		58833	28230	41255	41318	64210	64210					0.11351175545519254
PLTLNAMLD	9	Unmodified	_PLTLNAMLD_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2633361816406	2	494.26261	986.510668	0.4533	0.00022405	-1.6355	-0.00080835	-1.1822	-0.0005843	494.2619308753109	74.724	1.0067	74.541	74.18	75.187	-0.18279					54	23	4	0	0	0	0.33245	1	8818	8818		71.296	5.8303	1	709990	+		58834	27318	41256	41319	64211	64211					0.016872919599791203
PLTPFSPHNT	10	Unmodified	_PLTPFSPHNT_					0	0	0		ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant;ENSG00000073331|ENST00000650871|ALPK1;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	ALPK1|p.L806Pfs*74|1|0.13|ENSG00000073331|chr4:112431963-112431964|-/CATAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.3009643554688	2	555.782556	1109.55056	0.20494	0.0001139	-0.26411	-0.00014679	-0.059173	-3.2887E-05	555.7823533008524	46.392	0.60736	46.392	46.126	46.733	0					33	16	3	0	0	0	0.03519	1	4558	4558		24.519	8.8774	1	235100			58835	65	41257	41320	64212	64212					0.00016554954913772235
PLTRLQPQ	8	Unmodified	_PLTRLQPQ_					0	0	0			REV__ENSG00000228672|ENST00000434752|PROB1	REV__ENSG00000228672|ENST00000434752|PROB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77783203125	2	476.782359	951.550165	-0.0083887	-3.9996E-06	0.80497	0.00038379	0.79658	0.00037979	476.7825663010721	27.273	1.2186	27.26	26.621	27.84	-0.012983					54	31	2	0	0	0	0.027866	1	1514	1514		40.573	0	1	1117400	+		58836	28886	41258	41321	64213	64213					0.07245180025711306
PLTRPQSLS	9	Unmodified	_PLTRPQSLS_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8031311035156	2	499.785099	997.555644	-1.1582	-0.00057884	3.3833	0.0016909	2.2252	0.0011121	499.78643734948895	36.136	0.13963	36.093	36.032	36.172	-0.042454					5	3	2	0	0	0	0.022882	1	2839	2839		85.161	12.282	1	36488	+		58837	36501	41259	41322	64214	64214					0.05676858817525954
PLTVSRLAI	9	Unmodified	_PLTVSRLAI_					0	0	0			REV__ENSG00000162390|ENST00000343744|ACOT11	REV__ENSG00000162390|ENST00000343744|ACOT11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.27197265625	2	485.30821	968.601866	1.367	0.00066344	-1.5032	-0.00072952	-0.13617	-6.6082E-05	485.3072304098057	63.802	0.67886	63.847	63.438	64.117	0.045502					42	18	3	0	0	0	0.024323	1	7425	7425		53.351	0	1	696410	+		58838	25434	41260	41323	64215	64215					0.11630923719599195
PLVAAWTCGW	10	Unmodified	_PLVAAWTCGW_					0	0	0			REV__ENST00000585371.1_1_19:4428663-4429284:+|nuORF	REV__ENST00000585371.1_1_19:4428663-4429284:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.7472534179688	2	552.27077	1102.52699	-0.37715	-0.00020829	3.1739	0.0017528	2.7967	0.0015445	552.2723654219141	39.738	0.74245	39.515	39.111	39.854	-0.22311					49	18	3	0	0	0	0.03519	1	3371	3371		24.203	10.066	1	1357500	+		58839	35571	41261	41324	64216	64216					-0.020175820832719182
PLVAELVVQN	10	Unmodified	_PLVAELVVQN_					0	0	0		ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	ENSG00000162981|ENST00000295092|LRATD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2823486328125	2	541.316232	1080.61791	-1.3058	-0.00070687	0.73081	0.0003956	-0.57502	-0.00031127	541.3167159591551	52.473	0.41179	52.204	51.981	52.393	-0.26903					14	10	2	0	0	0	0.03519	1	5435	5435		29.15	0	1	93969			58840	7020	41262	41325	64217	64217					0.08082585165880118
PLVAPRAM	8	Unmodified	_PLVAPRAM_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2196044921875	2	427.749473	853.484393	0.15937	6.817E-05	-2.8831	-0.0012332	-2.7237	-0.0011651	427.74788805605954	27.536	0.4772	27.294	27.119	27.596	-0.24217					16	10	2	0	0	0	0.027866	1	1530	1530		9.4706	0	1	57601	+		58841	20794	41263	41326	64218	64218					0.05179067579160801
PLVAPRAM	8	Unmodified	_PLVAPRAM_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	427.749473	853.484393	-0.53693	-0.00022967	-9.2978	-0.0039771	-9.8347	-0.0042068	427.7454630847069	27.832	0.24166	27.664	27.487	27.729	-0.16816	0.18522	-0.0030566	NaN	9.4706	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29134	+		58842	20794	41263	41326							0.05179067579160801
PLVDRESTL	9	Unmodified	_PLVDRESTL_					0	0	0			REV__nc|ENSG00000082482|O95069-2|KCNK2	REV__nc|ENSG00000082482|O95069-2|KCNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7963256835938	2	515.282389	1028.55022	-0.92161	-0.00047489	1.0783	0.00055562	0.15667	8.0729E-05	515.2826733250763	35.812	0.88502	35.856	35.459	36.344	0.044056					33	23	2	0	0	0	0.024495	1	2683	2683		34.173	1.3601	1	262010	+		58843	20696	41264	41327	64219	64219					0.03709135235044414
PLVLATTSEW	10	Unmodified	_PLVLATTSEW_					0	0	0			REV__ENST00000524181.5_1_8:144124388-144125605:+|nuORF	REV__ENST00000524181.5_1_8:144124388-144125605:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8002319335938	2	558.800414	1115.58628	-0.10191	-5.6945E-05	-0.054911	-3.0684E-05	-0.15682	-8.7629E-05	558.8000245208339	86.82	1.0626	86.683	86.268	87.331	-0.13734					61	24	4	0	0	0	0.941	1	10540	10540		51.335	3.4199	1	1034200	+		58844	34373	41265	41328	64220	64220					0.033105924118899566
PLVLLLLLLLP	11	Unmodified	_PLVLLLLLLLP_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MSMS	OPSCC_39_ClassI_Rep-3	3	406.2956848144531	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.37	1	112.38	111.88	112.88	0.0077286								0	0	0	1.7978	1	14026	14026		1.523	0	1		+		58845	24158	41266	41329	64221	64221					0.2577239213514986
PLVLPFVVK	9	Unmodified	_PLVLPFVVK_					0	0	0			REV__ENST00000331334.4_1_14:96000938-96001127:+|nuORF	REV__ENST00000331334.4_1_14:96000938-96001127:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7142028808594	2	506.333696	1010.65284	-0.0070484	-3.5688E-06	-4.2939	-0.0021741	-4.3009	-0.0021777	506.3315307924047	34.713	0.4046	34.492	34.301	34.705	-0.22182					14	9	2	0	0	0	0.024535	1	2566	2566		12.207	5.4713	1	130880	+		58846	30473	41267	41330	64222	64222					0.14793872764471416
PLVLRPVYI	9	Unmodified	_PLVLRPVYI_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.3434448242188	2	535.342052	1068.66955	-0.26946	-0.00014425	3.4172	0.0018294	3.1478	0.0016851	535.3438004645328	76.332	0.72398	76.344	76.051	76.775	0.011635					40	17	4	0	0	0	0.85941	1	9332	9332		35.201	3.6709	1	1972200			58847	7259	41268	41331	64223	64223					0.13796373650416172
PLVMLVISPI	10	Unmodified	_PLVMLVISPI_					0	0	0		nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.3222045898438	2	541.338121	1080.66169	-0.15537	-8.411E-05	3.8922	0.002107	3.7369	0.0020229	541.3407402198361	60.161	0.34264	60.161	59.951	60.294	0					12	8	2	0	0	0	0.03519	1	6913	6913		23.042	0	1	125190			58848	8803	41269	41332	64224	64224					0.12458478338635359
PLVNKLTK	8	Unmodified	_PLVNKLTK_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT;ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.25909423828125	2	456.797478	911.580402	-0.06159	-2.8134E-05	-0.24398	-0.00011145	-0.30557	-0.00013958	456.7972009741612	28.146	0.42014	28.226	27.95	28.37	0.080811					14	9	2	0	0	0	0.027866	1	1524	1524		19.36	0	1	102750			58849	9647	41270	41333	64225	64225					0.12107538690872843
PLVPDLQDV	9	Unmodified	_PLVPDLQDV_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2953796386719	2	498.274032	994.533512	0.37745	0.00018807	3.4665	0.0017273	3.844	0.0019154	498.2757606316293	40.857	0.42839	40.857	40.657	41.085	0					19	11	2	0	0	0	0.024292	1	3661	3661		32.812	0	1	331470			58850	5353	41271	41334	64226	64226					0.03602634349101663
PLVPGRAK	8	Unmodified	_PLVPGRAK_					0	0	0		ENST00000412615.6_2_12:112563379-112568334:+|nuORF	ENST00000412615.6_2_12:112563379-112568334:+|nuORF	ENST00000412615.6_2_12:112563379-112568334:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	418.9009094238281	2	419.268887	836.523222	0.51507	0.00021595	0.74957	0.00031427	1.2646	0.00053023	419.26925361610114	18.979	0.39492	18.775	18.559	18.954	-0.20371					12	7	3	0	0	0	0.027866	1	349	349		19.36	0	1	25585			58851	13820	41272	41335	64227	64227					0.09842116205174989
PLVPQLKLL	9	Unmodified	_PLVPQLKLL_					0	0	0			REV__ENST00000571710.5_1_17:1945525-1946395:+|nuORF	REV__ENST00000571710.5_1_17:1945525-1946395:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.789794921875	2	510.844428	1019.6743	0.71444	0.00036497	-2.3128	-0.0011815	-1.5984	-0.00081653	510.84303962629474	85.565	0.25379	85.565	85.331	85.584	0					7	5	2	0	0	0	0.024535	1	10736	10736		25.45	0	1	41503	+		58852	35413	41273	41336	64228	64228					0.16525257793159653
PLVQKALN	8	Unmodified	_PLVQKALN_					0	0	0		nc|ENSG00000111615|Q13601-2|KRR1;ENSG00000111615|ENST00000229214|KRR1;ENST00000550898.1_1_12:75900510-75905383:-|nuORF;ENST00000550023.5_1_12:75900251-75905383:-|nuORF	nc|ENSG00000111615|Q13601-2|KRR1	nc|ENSG00000111615|Q13601-2|KRR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.2314758300781	2	441.774003	881.533452	0.073179	3.2328E-05	0.088072	3.8908E-05	0.16125	7.1236E-05	441.7738797694678	47.413	0.4861	47.143	46.977	47.463	-0.26939					20	12	2	0	0	0	0.027866	1	4633	4633		20.482	6.7065	1	137180			58853	3126	41274	41337	64229	64229					0.08794679139737127
PLVRGSHLTFD	11	Unmodified	_PLVRGSHLTFD_					0	0	0			REV__ENSG00000099994|ENST00000358321|SUSD2	REV__ENSG00000099994|ENST00000358321|SUSD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.5596923828125	3	414.559417	1240.65642	-0.37487	-0.00015541	0.20226	8.385E-05	-0.17261	-7.1557E-05	414.5594908845124	26.455	1.4893	26.286	25.87	27.359	-0.16816					94	37	4	0	0	0	1.0215	1	1410	1410		32.034	4.9868	1	5548900	+		58854	21029	41275	41338	64230	64230					0.04571890800343681
PLVRKIAAE	9	Unmodified	_PLVRKIAAE_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7705993652344	2	498.813659	995.612765	-0.14271	-7.1186E-05	0.60898	0.00030377	0.46627	0.00023258	498.81359011745747	66.229	0.68902	65.948	65.524	66.213	-0.28148					52	17	4	0	0	0	0.024367	1	7784	7784		44.377	0	1	1139400			58855	5683	41276	41339	64231	64231					0.11478326093879332
PLVRLHKSL	9	Unmodified	_PLVRLHKSL_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8422241210938	2	531.842751	1061.67095	-0.28351	-0.00015078	-0.41246	-0.00021937	-0.69597	-0.00037015	531.8424932057815	51.305	1.4201	51.305	50.74	52.16	0					109	39	5	0	0	0	0.80658	1	5451	5451		38.806	4.6336	1	12077000	+		58856	27472	41277	41340	64232	64232					0.14258007739181267
PLVSSLIPHI	10	Unmodified	_PLVSSLIPHI_					0	0	0		ENST00000498157.1_1_1:109815480-109816293:+|nuORF	ENST00000498157.1_1_1:109815480-109816293:+|nuORF	ENST00000498157.1_1_1:109815480-109816293:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.32666015625	2	538.329142	1074.64373	0.47679	0.00025667	-4.3339	-0.002333	-3.8571	-0.0020764	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	1.1166	1	12334	12334		30.504	1.3336	1	21461000			58857	15615	41278	41341	64233	64233					0.10939479408125408
PLVTMTSLL	9	Unmodified	_PLVTMTSLL_					0	0	0		ENST00000605627.1_1_12:51640609-51663098:-|nuORF	ENST00000605627.1_1_12:51640609-51663098:-|nuORF	ENST00000605627.1_1_12:51640609-51663098:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.795166015625	2	487.783179	973.551804	-0.52716	-0.00025714	4.1807	0.0020393	3.6535	0.0017821	487.7851282695113	28.103	0.48551	28.098	27.888	28.374	-0.0042019					22	11	2	0	0	0	0.024386	1	1634	1634		33.516	1.5607	1	359960			58858	17557	41279	41342	64234	64234					0.06397052999466268
PLVTPIRHGHG	11	Unmodified	_PLVTPIRHGHG_					0	0	0			REV__ENST00000482831.1_1_2:230450587-230451634:-|nuORF	REV__ENST00000482831.1_1_2:230450587-230451634:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.3064575195312	2	592.338364	1182.66217	-0.53822	-0.00031881	2.5252	0.0014958	1.987	0.001177	592.3396444926777	63.117	0.52817	62.896	62.691	63.219	-0.22097					28	12	3	0	0	0	0.024741	1	7137	7137		23.523	8.6578	1	464970	+		58859	33494	41280	41343	64235	64235					0.07815034102691243
PLVVGPFLDS	10	Unmodified	_PLVVGPFLDS_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2634887695312	2	522.292225	1042.5699	-0.2086	-0.00010895	-0.20238	-0.0001057	-0.41098	-0.00021465	522.2921932225639	53.89	0.43358	53.693	53.456	53.889	-0.19739					27	12	3	0	0	0	0.03519	1	5710	5710		30.504	14.862	1	281280	+		58860	36819	41281	41344	64236	64236					0.05031511245783804
PLVVIVDAVS	10	Unmodified	_PLVVIVDAVS_					0	0	0		ENSG00000256043|ENST00000433477|CTSO	ENSG00000256043|ENST00000433477|CTSO	ENSG00000256043|ENST00000433477|CTSO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.27734375	2	506.307875	1010.6012	-0.23424	-0.0001186	0.71373	0.00036137	0.4795	0.00024277	506.3082212866655	55.081	0.4588	54.85	54.638	55.096	-0.23087					16	12	2	0	0	0	0.03519	1	5853	5853		37.159	0	1	110390			58861	10901	41282	41345	64237	64237					0.09632084279905939
PLVVKIKR	8	Unmodified	_PLVVKIKR_					0	0	0			REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.72760009765625	2	476.836937	951.659321	-0.34557	-0.00016478	0.069246	3.3019E-05	-0.27633	-0.00013176	476.83676703945196	26.732	0.24762	26.496	26.416	26.663	-0.23603					7	5	2	0	0	0	0.027866	1	1415	1415		4.3163	0.63193	1	41812	+		58862	24571	41283	41346	64238	64238					0.1815581071583665
PLVVKIKR	8	Unmodified	_PLVVKIKR_					0	0	0			REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7275085449219	2	476.836937	951.659321	-0.27501	-0.00013114	-1.1003	-0.00052464	-1.3753	-0.00065578	476.83628585688746	26.503	0.2002	26.335	26.262	26.462	-0.16816					6	4	2	0	0	0	0.027866	1	1385	1385		4.3163	0.33103	1	34993	+		58863	24571	41283	41346	64239	64239					0.1815581071583665
PLVVKIKR	8	Unmodified	_PLVVKIKR_					0	0	0			REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	REV__SLC26A7|p.Y430Ifs*6|1|0.35|ENSG00000147606|chr8:91352962-91352963|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.836937	951.659321	-0.5667	-0.00027022	0.39237	0.0001871	-0.17433	-8.3128E-05	476.8370532697338	26.815	0.37566	26.659	26.426	26.802	-0.15664	0.1621	0.00021222	NaN	3.9852	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34505	+		58864	24571	41283	41346							0.1815581071583665
PLVVRPIL	8	Unmodified	_PLVVRPIL_					0	0	0		ENST00000590156.5_1_18:43667083-43667326:-|nuORF	ENST00000590156.5_1_18:43667083-43667326:-|nuORF	ENST00000590156.5_1_18:43667083-43667326:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.2816162109375	2	453.810388	905.606223	0.43357	0.00019676	-0.71025	-0.00032232	-0.27668	-0.00012556	453.80993169285244	48.95	0.45158	48.95	48.724	49.176	0					20	12	2	0	0	0	0.027866	1	5060	5060		39.021	24.357	1	226290			58865	17323	41284	41347	64240	64240					0.14964432933174976
PLWAQDTL	8	Unmodified	_PLWAQDTL_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2950439453125	2	472.247818	942.481082	0.08104	3.8271E-05	0.56366	0.00026619	0.6447	0.00030446	472.24794599213516	54.895	1.0255	54.993	54.458	55.484	0.098015					65	28	3	0	0	0	0.027866	1	5984	5984		42.474	0	1	1198800	+		58866	25866	41285	41348	64241	64241					0.007540960061305668
PLWCAGGPEL	10	Unmodified	_PLWCAGGPEL_					0	0	0			REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3031005859375	2	521.754953	1041.49535	0.87766	0.00045792	-3.4166	-0.0017826	-2.539	-0.0013247	522.2536215548309	83.162	0.59892	83.071	82.658	83.257	-0.090454					17	13	2	0	0	0	0.03519	1	10311	10311		31.955	5.2619	1	55386	+		58867	33079	41286	41349	64242	64242					-0.02373574837201886
PLWGLVWF	8	Unmodified	_PLWGLVWF_					0	0	0			REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF	REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.76153564453125	2	509.281463	1016.54837	-0.59479	-0.00030291	-0.0025513	-1.2993E-06	-0.59734	-0.00030421	509.2813876897496	65.554	1.3783	65.303	64.665	66.044	-0.25112					70	33	3	0	0	0	0.027866	1	7471	7471		43.626	0	1	981530	+		58868	29941	41287	41350	64243	64243					0.040761710077504176
PLWLCLLL	8	Unmodified	_PLWLCLLL_					0	0	0			REV__ENSG00000120256|ENST00000239367|LRP11	REV__ENSG00000120256|ENST00000239367|LRP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.28143310546875	2	485.793349	969.572146	-0.75622	-0.00036737	2.998	0.0014564	2.2418	0.001089	485.79451705824243	89.954	0.86396	89.954	89.605	90.469	0					30	20	2	0	0	0	0.027866	1	11324	11324		43.626	0	1	862360	+		58869	22520	41288	41351	64244	64244					0.08614268449912288
PLWLGVSP	8	Unmodified	_PLWLGVSP_					0	0	0		ENST00000546151.5_1_11:61125276-61129264:-|nuORF	ENST00000546151.5_1_11:61125276-61129264:-|nuORF	ENST00000546151.5_1_11:61125276-61129264:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7801208496094	2	434.749996	867.485439	0.33159	0.00014416	-4.0077	-0.0017423	-3.6761	-0.0015982	434.7482272984643	36.315	0.38724	36.098	35.981	36.368	-0.21661					15	9	2	0	0	0	0.027866	1	2824	2824		20.482	0	1	102190			58870	16506	41289	41352	64245	64245					0.046396052197110293
PLWPTTSTL	9	Unmodified	_PLWPTTSTL_					0	0	0		ENST00000381975.7_2_3:194337862-194344032:-|nuORF	ENST00000381975.7_2_3:194337862-194344032:-|nuORF	ENST00000381975.7_2_3:194337862-194344032:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.82708740234375	2	508.276575	1014.5386	-1.2635	-0.00064219	-3.2432	-0.0016484	-4.5067	-0.0022906	508.2747180375699	40.983	0.4048	40.752	40.52	40.925	-0.23029					14	10	2	0	0	0	0.024412	1	3544	3544		31.955	1.4512	1	135880			58871	13350	41290	41353	64246	64246					0.03190938211707817
PLWRTLSVVS	10	Unmodified	_PLWRTLSVVS_					0	0	0			REV__ENSG00000179431|ENST00000317811|FJX1	REV__ENSG00000179431|ENST00000317811|FJX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.3369140625	2	579.337498	1156.66044	-0.0088556	-5.1304E-06	0.15178	8.793E-05	0.14292	8.28E-05	579.3374828366217	83.916	0.77477	83.747	83.451	84.225	-0.16916					35	17	3	0	0	0	0.94316	1	10152	10152		51.193	1.6567	1	567740	+		58872	27267	41291	41354	64247	64247					0.08837980294106274
PLWVKLLGLS	10	Unmodified	_PLWVKLLGLS_					0	0	0			REV__nc|ENSG00000169344|P07911-2|UMOD	REV__nc|ENSG00000169344|P07911-2|UMOD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2852783203125	2	563.35516	1124.69577	-0.28537	-0.00016077	-3.4397	-0.0019378	-3.7251	-0.0020986	563.3526315327479	67.347	0.41422	67.124	66.899	67.313	-0.22374					13	9	2	0	0	0	0.03519	1	7765	7765		23.042	1.0826	1	134520	+		58873	26357	41292	41355	64248	64248					0.13840642821901383
PLYISNPVN	9	Unmodified	_PLYISNPVN_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant;ENST00000479391.6_3_9:98729892-98767017:+|nuORF	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2928466796875	2	508.7742	1015.53385	-0.093508	-4.7574E-05	4.0116	0.002041	3.9181	0.0019934	508.77583609114043	50.379	0.19879	50.46	50.377	50.576	0.08099					7	5	2	0	0	0	0.024466	1	5200	5200		39.253	20.928	1	184110			58874	9104	41293	41356	64249	64249					0.02670054068948957
PLYLLELAR	9	Unmodified	_PLYLLELAR_					0	0	0			REV__nc|ENSG00000071462|O43709-2|BUD23	REV__nc|ENSG00000071462|O43709-2|BUD23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2473754882812	2	544.329142	1086.64373	-0.52157	-0.0002839	0.15797	8.5988E-05	-0.3636	-0.00019792	544.3289308613648	52.111	0.60851	51.927	51.705	52.314	-0.18405					31	15	3	0	0	0	0.024541	1	5441	5441		10.866	0	1	433150	+		58875	20449	41294	41357	64250	64250					0.10387479408132094
PLYNVPEEPPL	11	Unmodified	_PLYNVPEEPPL_					0	0	0		ENSG00000108950|ENST00000592554|FAM20A	ENSG00000108950|ENST00000592554|FAM20A	ENSG00000108950|ENST00000592554|FAM20A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.2223205566406	3	423.223811	1266.6496	-0.62675	-0.00026526	-2.2976	-0.00097241	-2.9244	-0.0012377	423.222814943719	29.453	1.275	29.456	29.092	30.367	0.0031357					44	31	2	0	0	0	0.99689	1	1809	1809		37.508	2.0125	1	1521100			58876	2950	41295	41358	64251	64251					0.02694533129147203
PLYSSSCPE	9	Unmodified	_PLYSSSCPE_					0	0	0			REV__ENSG00000203786|ENST00000606109|KPRP	REV__ENSG00000203786|ENST00000606109|KPRP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.263671875	2	491.71295	981.411348	-0.74549	-0.00036657	1.2385	0.00060901	0.49305	0.00024244	491.7134064931465	39.863	0.68218	39.713	39.433	40.116	-0.1497					25	17	2	0	0	0	0.024354	1	3434	3434		47.916	7.343	1	223840	+		58877	28545	41296	41359	64252	64252					-0.08010150724783216
PLYVLKKMK	9	Unmodified	_PLYVLKKMK_					0	0	0			REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.3241577148438	2	560.351563	1118.68857	-0.10236	-5.7358E-05	3.1745	0.0017789	3.0722	0.0017215	560.3533946410978	68.092	0.50569	67.804	67.511	68.017	-0.28834					17	12	2	0	0	0	0.024487	1	8135	8135		31.955	0	1	238810	+		58878	35257	41297	41360	64253	64253					0.133975869498272
PLYVLNKYG	9	Unmodified	_PLYVLNKYG_					0	0	0			REV__nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	REV__nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2817993164062	2	533.800217	1065.58588	-1.3104	-0.00069949	-3.0928	-0.001651	-4.4033	-0.0023505	533.7984406275266	39.149	0.67744	39.172	38.993	39.671	0.023727					36	18	3	0	0	0	0.024541	1	3260	3260		29.842	20.659	1	584570	+		58879	27079	41298	41361	64254	64254					0.055712174827021954
PMAINLNLAY	10	Unmodified	_PMAINLNLAY_					0	0	0			REV__ENSG00000205060|ENST00000378509|SLC35B4	REV__ENSG00000205060|ENST00000378509|SLC35B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.2985229492188	2	560.296985	1118.57942	-1.7176	-0.00096238	4.4692	0.0025041	2.7516	0.0015417	560.299386236912	38.417	1.083	38.444	38.162	39.245	0.027275					86	29	5	0	0	0	0.79525	1	3169	3169		60.972	9.7792	1	5377500	+		58880	28656	41299	41362	64255	64255					0.024869562596677497
PMALHSHSQ	9	Unmodified	_PMALHSHSQ_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.3050231933594	2	504.240001	1006.46545	-0.74923	-0.00037779	-4.3281	-0.0021824	-5.0773	-0.0025602	504.2376357907046	69.242	0.91095	68.98	68.301	69.211	-0.26166					28	21	3	0	0	0	0.024466	1	7965	7965		39.253	13.803	1	176880	+		58881	22049	41300	41363	64256	64256					-0.03752513782558253
PMALHSHSQ	9	Unmodified	_PMALHSHSQ_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	504.240001	1006.46545	0.137	6.9083E-05	-4.9234	-0.0024826	-4.7864	-0.0024135	504.2373223740612	69.208	0.57748	68.965	68.707	69.284	-0.24277	-0.017767	-0.0004859	NaN	39.253	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258220	+		58882	22049	41300	41363							-0.03752513782558253
PMALHSHSQ	9	Unmodified	_PMALHSHSQ_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.240001	1006.46545	-0.45912	-0.00023151	-4.181	-0.0021082	-4.6401	-0.0023397	504.2377271088804	69.226	0.45728	69.003	68.768	69.226	-0.22245	0.020423	0.00026275	NaN	39.253	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321500	+		58883	22049	41300	41363							-0.03752513782558253
PMAQPVIPPTP	11	Unmodified	_PMAQPVIPPTP_					0	0	0		SCAF4|p.Y601Ifs*75|1|0.3|ENSG00000156304|chr21:31690881-31690881|A/-|frameshift_variant;SCAF4|p.T676Nfs*98|1|0.25|ENSG00000156304|chr21:31688325-31688326|-/A|frameshift_variant;SCAF4|p.P668Sfs*106|1|0.25|ENSG00000156304|chr21:31688349-31688350|-/G|frameshift_variant;SCAF4|p.D1058Efs*6|1|0.06|ENSG00000156304|chr21:31671668-31671669|TG/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;ENSG00000156304|ENST00000286835|SCAF4;ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-3|SCAF4	SCAF4|p.Y601Ifs*75|1|0.3|ENSG00000156304|chr21:31690881-31690881|A/-|frameshift_variant	SCAF4|p.Y601Ifs*75|1|0.3|ENSG00000156304|chr21:31690881-31690881|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.7860717773438	2	574.312635	1146.61072	0.92298	0.00053008	-1.7336	-0.00099561	-0.8106	-0.00046554	574.3103874252889	70.631	0.66056	70.338	70.137	70.798	-0.29291					38	18	3	0	0	0	0.024795	1	8541	8541		42.864	0	1	575940			58884	6522	41301	41364	64257	64257					0.04327529293777843
PMAWQTAL	8	Unmodified	_PMAWQTAL_					0	0	0		ENST00000374280.3_1_1:26348697-26349021:+|nuORF	ENST00000374280.3_1_1:26348697-26349021:+|nuORF	ENST00000374280.3_1_1:26348697-26349021:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2292175292969	2	459.231113	916.447674	-0.33195	-0.00015244	-3.6636	-0.0016824	-3.9956	-0.0018349	459.2293382268946	30.34	3.8425	30.415	28.975	32.817	0.074316					201	95	4	0	0	0	0.78609	1	1922	1922		60.294	1.512	1	1378400			58885	13107	41302	41365	64258	64258					-0.013892290374201366
PMDNMINQM	9	Unmodified	_PMDNMINQM_					0	0	0			REV__EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	REV__EPHA2|p.A797Gfs*19|1|0.16|ENSG00000142627|chr1:16131806-16131807|-/CAGAGGTGAACTTC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.8196411132812	2	547.227387	1092.44022	-0.60298	-0.00032997	0.24815	0.00013579	-0.35483	-0.00019417	547.2275358632567	64.688	0.23447	64.453	64.256	64.49	-0.2345					7	5	2	0	0	0	0.024405	1	7341	7341		44.117	21.074	1	78116	+		58886	24172	41303	41366	64259	64259					-0.1023007269163827
PMFLSNKL	8	Unmodified	_PMFLSNKL_					0	0	0		ENSG00000104450|ENST00000388798|SPAG1;ENST00000519409.1_1_8:101252858-101271281:+|nuORF	ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.750732421875	2	475.262413	948.510274	-0.067782	-3.2214E-05	2.8648	0.0013616	2.7971	0.0013293	475.2637153903475	31.684	0.80198	31.499	31.062	31.864	-0.18503					29	19	2	0	0	0	0.027866	1	2159	2159		31.955	18.18	1	871140			58887	2575	41304	41367	64260	64260					0.033959170307753084
PMFLSNKL	8	Unmodified	_PMFLSNKL_					0	0	0		ENSG00000104450|ENST00000388798|SPAG1;ENST00000519409.1_1_8:101252858-101271281:+|nuORF	ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.262413	948.510274	0.23328	0.00011087	2.7898	0.0013259	3.0231	0.0014368	475.2636867848735	31.717	0.47785	31.476	31.258	31.735	-0.24109	-0.011551	-3.0872E-05	NaN	24.203	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	784810			58888	2575	41304	41367							0.033959170307753084
PMFSYSKEL	9	Oxidation (M)	_PM(Oxidation (M))FSYSKEL_		PM(1)FSYSKEL		PM(110)FSYSKEL	0	0	1			REV__ENSG00000123307|ENST00000242994|NEUROD4	REV__ENSG00000123307|ENST00000242994|NEUROD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.265869140625	2	559.26535	1116.51615	-0.70236	-0.00039281	0.9418	0.00052672	0.23944	0.00013391	559.2655541154963	83.645	3.8413	83.555	83.129	86.97	-0.090454					150	90	3	0	0	0	0.11092	1	10459	10459		108.09	14.944	1	951600	+		58889	22687	41305	41368	64261	64261		675			-0.037450292482162695
PMFSYSKEL	9	Oxidation (M)	_PM(Oxidation (M))FSYSKEL_		PM(1)FSYSKEL		PM(96)FSYSKEL	0	0	1			REV__ENSG00000123307|ENST00000242994|NEUROD4	REV__ENSG00000123307|ENST00000242994|NEUROD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2658081054688	2	559.26535	1116.51615	-0.70476	-0.00039415	0.89568	0.00050092	0.19091	0.00010677	559.2656022076416	83.517	1.4924	83.544	83.046	84.538	0.026558					94	34	3	0	0	0	0.16468	1	10412	10412		96.19	18.873	1	870980	+		58890	22687	41305	41368	64262	64262		675			-0.037450292482162695
PMFYSVKQA	9	Unmodified	_PMFYSVKQA_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38;ENST00000569952.1_1_16:72142713-72143598:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3292236328125	2	535.770603	1069.52665	-0.58823	-0.00031516	-1.3784	-0.00073852	-1.9667	-0.0010537	535.7690597217371	40.794	0.78688	40.569	40.222	41.009	-0.2252					45	20	3	0	0	0	0.024262	1	3492	3492		68.485	43.966	1	293600			58891	5444	41306	41369	64263	64263					-0.0053300180311453005
PMGCDCFVQ	9	Carbamidomethyl (C),Oxidation (M)	_PM(Oxidation (M))GC(Carbamidomethyl (C))DCFVQ_	PMGC(0.999)DC(0.001)FVQ	PM(1)GCDCFVQ	PMGC(31)DC(-31)FVQ	PM(56)GCDCFVQ	0	1	1		CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant;ENSG00000178772|ENST00000323830|CPN2	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	CPN2|p.P234Lfs*10|1|0.25|ENSG00000178772|chr3:194342002-194342002|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.696533203125	2	536.698463	1071.38237	-0.93227	-0.00050035	-4.2868	-0.0023007	-5.2191	-0.0028011	536.6966134102694	44.039	1.1484	44.076	43.635	44.783	0.0369					91	32	5	0	0	0	0.55828	1	4108	4108		55.504	7.8469	2	6625800			58892	581	41307	41370	64264	64264	7	15			-0.1504633461706817
PMGKEVIFAT	10	Unmodified	_PMGKEVIFAT_					0	0	0			REV__nc|ENSG00000128928|P26440-2|IVD	REV__nc|ENSG00000128928|P26440-2|IVD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7894287109375	2	546.791535	1091.56852	-0.751	-0.00041064	-2.9635	-0.0016204	-3.7145	-0.0020311	546.7896938751778	32.62	2.7725	32.462	31.374	34.146	-0.15772					142	68	4	0	0	0	1.0002	1	2256	2256		45.972	1.5951	1	1499700	+		58893	23021	41308	41371	64265	64265					0.026395538853876133
PMGVLHCNVP	10	Unmodified	_PMGVLHCNVP_					0	0	0		CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.L1401Yfs*3|1|0.8|ENSG00000119397|chr9:121154742-121154743|TG/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7593994140625	2	533.762255	1065.50996	-0.75155	-0.00040115	3.6983	0.001974	2.9468	0.0015729	533.7641107459964	73.221	0.66117	72.956	72.595	73.256	-0.26479					26	15	2	0	0	0	0.03519	1	8575	8575		30.504	21.321	1	816070			58894	464	41309	41372	64266	64266					-0.020178259607519067
PMIALTTI	8	Unmodified	_PMIALTTI_					0	0	0		VPS53|p.E492K|1|0.28|ENSG00000141252|chr17:562585-562585|C/T|missense_variant;ENST00000572607.1_1_17:454958-465900:-|nuORF;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	VPS53|p.E492K|1|0.28|ENSG00000141252|chr17:562585-562585|C/T|missense_variant	VPS53|p.E492K|1|0.28|ENSG00000141252|chr17:562585-562585|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.26605224609375	2	430.251514	858.488476	-0.46129	-0.00019847	-3.7679	-0.0016211	-4.2292	-0.0018196	430.25021549120527	48.568	0.48709	48.415	48.159	48.646	-0.15277					20	13	2	0	0	0	0.027866	1	4971	4971		46.766	0	1	171380			58895	5477	41310	41373	64267	64267					0.05357112282194976
PMIKSKYK	8	Unmodified	_PMIKSKYK_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.3076171875	2	497.791338	993.568123	-0.19102	-9.509E-05	3.3912	0.0016881	3.2002	0.001593	497.7927914433764	21.828	0.5285	21.637	21.372	21.9	-0.19072					18	10	3	0	0	0	0.027866	1	736	736		31.955	0	1	61214	+		58896	26953	41311	41374	64268	64268					0.07108178956195843
PMIPCYISSP	10	Unmodified	_PMIPCYISSP_					0	0	0		ENSG00000035862|ENST00000262768|TIMP2	ENSG00000035862|ENST00000262768|TIMP2	ENSG00000035862|ENST00000262768|TIMP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7557373046875	2	554.264296	1106.51404	1.635	0.00090624	-4.2739	-0.0023689	-2.6389	-0.0014626	554.2619361785052	23.513	1.2222	23.322	22.572	23.794	-0.19117					63	27	3	0	0	0	0.03519	1	820	820		20.947	0	1	251990			58897	1036	41312	41375	64269	64269					-0.03495781257674935
PMKFHEAKPLI	11	Unmodified	_PMKFHEAKPLI_					0	0	0			REV__ENSG00000155622|ENST00000286049|XAGE2	REV__ENSG00000155622|ENST00000286049|XAGE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.8814392089844	3	437.581164	1309.72166	-0.85508	-0.00037417	3.0571	0.0013377	2.2021	0.00096358	437.91684091812283	39.209	0.47036	39.045	38.795	39.265	-0.16458					20	12	2	0	0	0	0.024808	1	3335	3335		39.873	0	1	126580	+		58898	25015	41313	41376	64270	64270					0.07919169001888804
PMLEVRLL	8	Unmodified	_PMLEVRLL_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7425842285156	2	485.791338	969.568123	-0.16661	-8.0937E-05	3.5833	0.0017407	3.4167	0.0016598	485.79287196772054	41.575	0.96809	41.345	40.964	41.932	-0.23029					51	25	4	0	0	0	0.027866	1	3745	3745		60.294	10.269	1	1202600			58899	7286	41314	41377	64271	64271					0.08212178956205207
PMLHFQKL	8	Unmodified	_PMLHFQKL_					0	0	0			REV__NMT1|p.T363M|1|0.24|ENSG00000136448|chr17:45103045-45103045|C/T|missense_variant	REV__NMT1|p.T363M|1|0.24|ENSG00000136448|chr17:45103045-45103045|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.30511474609375	2	507.28368	1012.55281	-0.055335	-2.807E-05	-1.8258	-0.00092619	-1.8811	-0.00095426	507.78274683230126	41.237	0.74224	41.237	41.016	41.758	0					30	20	2	0	0	0	0.027866	1	3698	3698		42.474	3.2216	1	136390	+		58900	37289	41315	41378	64272	64272					0.047033121590061455
PMLLQALAL	9	Unmodified	_PMLLQALAL_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121747778-121756274:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;ANAPC5|p.A600T|1|0.39|ENSG00000089053|chr12:121318372-121318372|C/T|missense_variant	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MSMS	OPSCC_40_ClassI_Rep-1	4	485.29595947265625	2	485.293714	968.572874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.8	1	70.529	70.029	71.029	-0.27185								0	0	0	0.33713	1	8248	8248		65.803	2.4969	1				58901	1891	41316	41379	64273	64273					0.08733063098952698
PMLPPVGPML	10	Unmodified	_PMLPPVGPML_					0	0	0			REV__ENST00000577324.1_1_17:30677304-30687987:+|nuORF	REV__ENST00000577324.1_1_17:30677304-30687987:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2904663085938	2	526.287574	1050.56059	0.59574	0.00031353	-1.2445	-0.00065497	-0.64878	-0.00034144	526.2867151829394	74.378	1.0605	74.196	73.961	75.022	-0.18279					57	24	4	0	0	0	0.88914	1	8776	8776		54.765	7.1073	1	2462600	+		58902	19899	41317	41380	64274	64274					0.037337033642870665
PMLSFSKKL	9	Unmodified	_PMLSFSKKL_					0	0	0			REV__ENST00000534084.1_1_11:61120459-61120651:+|nuORF	REV__ENST00000534084.1_1_11:61120459-61120651:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.8062133789062	2	525.804445	1049.59434	-0.45981	-0.00024177	3.682	0.001936	3.2222	0.0016942	525.8062749114689	46.872	0.56812	46.719	46.41	46.978	-0.15301					48	14	4	0	0	0	0.39228	1	4660	4660		66.429	3.4509	1	2126300	+		58903	34627	41318	41381	64275	64275					0.07152448127681055
PMLSPIVY	8	Unmodified	_PMLSPIVY_					0	0	0		ENSG00000197786|ENST00000357377|OR5B17	ENSG00000197786|ENST00000357377|OR5B17	ENSG00000197786|ENST00000357377|OR5B17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.2581787109375	2	460.251514	918.488476	-0.73225	-0.00033702	4.0639	0.0018704	3.3317	0.0015334	460.2538993112465	38.027	0.23917	37.809	37.718	37.957	-0.21849					12	6	3	0	0	0	0.027866	1	3072	3072		46.766	14.812	1	196430			58904	10049	41319	41382	64276	64276					0.025971122821943027
PMLSPIVY	8	Unmodified	_PMLSPIVY_					0	0	0		ENSG00000197786|ENST00000357377|OR5B17	ENSG00000197786|ENST00000357377|OR5B17	ENSG00000197786|ENST00000357377|OR5B17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	460.251514	918.488476	-0.82843	-0.00038129	5.3858	0.0024788	4.5574	0.0020975	460.2539024499066	38.34	0.70294	38.16	37.908	38.611	-0.17929	0.17584	7.1858E-05	NaN	46.766	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335910			58905	10049	41319	41382							0.025971122821943027
PMMILALL	8	Unmodified	_PMMILALL_					0	0	0			REV__ENSG00000253598|ENST00000518568|SLC10A5	REV__ENSG00000253598|ENST00000518568|SLC10A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2522277832031	2	451.26611	900.517667	0.44027	0.00019868	4.0027	0.0018063	4.443	0.002005	451.2681853015899	105.2	0.94733	105.03	104.38	105.33	-0.16484					57	31	3	0	0	0	0.027866	1	13016	13016		16.705	0	1	82664	+		58906	29041	41320	41383	64277	64277					0.0634293330683704
PMMPAMGTVP	10	Unmodified	_PMMPAMGTVP_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3088989257812	2	516.239766	1030.46498	0.17061	8.8077E-05	-0.92231	-0.00047614	-0.7517	-0.00038806	516.2388850696695	87.153	0.33768	87.118	86.983	87.321	-0.035355					13	7	2	0	0	0	0.03519	1	10939	10939		37.159	0	1	86342			58907	10978	41321	41384	64278	64278					-0.04903392818278007
PMMQHYISL	9	Unmodified	_PMMQHYISL_					0	0	0		ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.2725219726562	2	560.269912	1118.52527	0.085493	4.7899E-05	2.5749	0.0014427	2.6604	0.0014906	560.2712192929854	93.204	2.5144	93.082	92.341	94.856	-0.12215					110	58	4	0	0	0	0.4752	1	11509	11509		60.972	0.67798	1	1927600			58908	4790	41322	41385	64279	64279					-0.02924959163510721
PMMRTLYDL	9	Unmodified	_PMMRTLYDL_					0	0	0			REV__ENSG00000143344|ENST00000360851|RGL1	REV__ENSG00000143344|ENST00000360851|RGL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.3119506835938	2	570.28302	1138.55149	-0.41305	-0.00023556	0.72665	0.0004144	0.3136	0.00017884	570.2835802534664	31.05	0.21491	31.062	30.999	31.214	0.011797					7	4	2	0	0	0	0.024418	1	2032	2032		45.972	19.279	1	44998	+		58909	24229	41323	41386	64280	64280					-0.01224689992045569
PMNLMGTGRH	10	Unmodified	_PMNLMGTGRH_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3047485351562	2	557.268235	1112.52192	-0.082367	-4.59E-05	-2.2545	-0.0012563	-2.3368	-0.0013022	557.2676676654871	21.641	0.62872	21.451	21.177	21.806	-0.19072					26	12	3	0	0	0	0.03519	1	654	654		32.751	4.8683	1	48823			58910	662	41324	41387	64281	64281					-0.029842092175385915
PMNLMGTGRH	10	Unmodified	_PMNLMGTGRH_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.268235	1112.52192	0.24599	0.00013708	-1.7965	-0.0010011	-1.5505	-0.00086405	557.2674215768043	21.474	0.47776	21.297	21.065	21.543	-0.17721	-0.080845	-6.1272E-05	NaN	32.751	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60102			58911	662	41324	41387							-0.029842092175385915
PMNLMGTGRH	10	Unmodified	_PMNLMGTGRH_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.268235	1112.52192	-1.3195	-0.00073531	-1.0185	-0.00056758	-2.338	-0.0013029	557.2683188871067	21.599	0.43628	21.386	21.167	21.604	-0.2128	0.0082025	0.00080583	NaN	32.751	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84524			58912	662	41324	41387							-0.029842092175385915
PMNNSEMVTES	11	Unmodified	_PMNNSEMVTES_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.75439453125	2	619.75502	1237.49549	-0.90216	-0.00055912	-0.79856	-0.00049491	-1.7007	-0.001054	619.7544995046673	33.487	0.95425	33.487	33.174	34.129	0					69	25	4	0	0	0	1.0238	1	2421	2421		31.53	1.2121	1	2934600	+		58913	25557	41325	41388	64282	64282					-0.11375987690189504
PMNNSEMVTES	11	Unmodified	_PMNNSEMVTES_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	619.75502	1237.49549	-0.90216	-0.00055912	-0.79856	-0.00049491	-1.7007	-0.001054	619.7544995046673	33.487	0.95425	33.487	33.174	34.129	0	0.13859	2.1837E-05	NaN	31.53	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2934600	+		58914	25557	41325	41388							-0.11375987690189504
PMNNSEMVTES	11	Unmodified	_PMNNSEMVTES_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	619.75502	1237.49549	-0.45543	-0.00028226	-1.1849	-0.00073434	-1.6403	-0.0010166	619.7543181720129	33.388	0.87902	33.394	33.08	33.959	0.0066223	0.045961	-0.00045701	NaN	31.53	69	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2957500	+		58915	25557	41325	41388							-0.11375987690189504
PMNNSEMVTES	11	Unmodified	_PMNNSEMVTES_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	619.75502	1237.49549	-0.18661	-0.00011565	-1.4004	-0.0008679	-1.587	-0.00098355	619.7540136762929	33.105	1.0522	33.161	32.838	33.89	0.056568	-0.187	-0.00072413	NaN	31.53	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2372400	+		58916	25557	41325	41388							-0.11375987690189504
PMNNSEMVTES	11	Unmodified	_PMNNSEMVTES_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	619.75502	1237.49549	-0.24839	-0.00015394	-0.38613	-0.0002393	-0.63451	-0.00039324	619.7547356599684	33.604	0.43959	33.373	33.153	33.593	-0.23107	0.024687	0.00053305	NaN	31.53	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354720	+		58917	25557	41325	41388							-0.11375987690189504
PMNNSEMVTES	11	Unmodified	_PMNNSEMVTES_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	619.75502	1237.49549	-1.2577	-0.00077946	0.58356	0.00036166	-0.67413	-0.0004178	619.7552023513365	33.577	0.42262	33.376	33.133	33.555	-0.20019	0.028121	0.001735	NaN	31.53	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343810	+		58918	25557	41325	41388							-0.11375987690189504
PMNNSEMVTES	11	Unmodified	_PMNNSEMVTES_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	619.75502	1237.49549	-0.95798	-0.00059372	0.20499	0.00012705	-0.75299	-0.00046667	619.7549319501926	33.464	0.47911	33.298	33.038	33.517	-0.16565	-0.050368	0.0012658	NaN	31.53	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253290	+		58919	25557	41325	41388							-0.11375987690189504
PMQIFTVL	8	Unmodified	_PMQIFTVL_					0	0	0			REV__ENST00000507761.1_1_4:80148591-80148798:+|nuORF	REV__ENST00000507761.1_1_4:80148591-80148798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.2380676269531	2	474.764789	947.515025	1.1672	0.00055416	-1.4615	-0.00069389	-0.29431	-0.00013973	474.76395791122746	72.509	1.3847	72.228	71.695	73.08	-0.28124					58	34	2	0	0	0	0.027866	1	8807	8807		47.916	22.465	1	296060	+		58920	34055	41326	41389	64283	64283					0.03916801173522799
PMRAAPVRLAR	11	Unmodified	_PMRAAPVRLAR_					0	0	0			REV__ENST00000602080.1_1_19:18047229-18047460:+|nuORF	REV__ENST00000602080.1_1_19:18047229-18047460:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.25244140625	3	413.24852	1236.72373	0.40781	0.00016853	3.298	0.0013629	3.7058	0.0015314	413.24935755517345	99.987	0.69308	99.997	99.743	100.44	0.010117					33	17	3	0	0	0	1.0238	1	12769	12769		21.78	7.0868	1	346430	+		58921	35868	41327	41390	64284	64284					0.11483642530333782
PMRAAPVRLAR	11	Unmodified	_PMRAAPVRLAR_					0	0	0			REV__ENST00000602080.1_1_19:18047229-18047460:+|nuORF	REV__ENST00000602080.1_1_19:18047229-18047460:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	413.24852	1236.72373	0.40781	0.00016853	3.298	0.0013629	3.7058	0.0015314	413.24935755517345	99.987	0.69308	99.997	99.743	100.44	0.010117	-0.11582	0.00018816	NaN	21.78	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346430	+		58922	35868	41327	41390							0.11483642530333782
PMRAAPVRLAR	11	Unmodified	_PMRAAPVRLAR_					0	0	0			REV__ENST00000602080.1_1_19:18047229-18047460:+|nuORF	REV__ENST00000602080.1_1_19:18047229-18047460:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	413.24852	1236.72373	0.55178	0.00022802	2.824	0.001167	3.3758	0.001395	413.2493176400161	100.18	0.46189	100.18	100.01	100.47	-0.0050812	0.062071	-0.00039948	NaN	21.78	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226830	+		58923	35868	41327	41390							0.11483642530333782
PMRAENQAN	9	Unmodified	_PMRAENQAN_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7432861328125	2	515.740365	1029.46618	0.64963	0.00033504	-2.401	-0.0012383	-1.7514	-0.00090324	515.7387696410522	70.192	0.32683	69.899	69.673	70	-0.29291					12	7	2	0	0	0	0.024511	1	8442	8442		19.104	10.281	1	141220			58924	2308	41328	41391	64285	64285					-0.0473771913350447
PMRARNLI	8	Unmodified	_PMRARNLI_					0	0	0			REV__ENST00000320785.9_1_17:4903608-4904652:+|nuORF	REV__ENST00000320785.9_1_17:4903608-4904652:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.3082580566406	2	485.784379	969.554204	-1.1732	-0.00056993	-3.3235	-0.0016145	-4.4967	-0.0021844	485.78238413942745	65.605	0.33139	65.392	65.215	65.547	-0.21327					12	7	2	0	0	0	0.027866	1	7513	7513		35.201	6.0512	1	74258	+		58925	30336	41329	41392	64286	64286					0.06820946247773918
PMRFVTRF	8	Unmodified	_PMRFVTRF_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;DAAM1|p.F380Sfs*26|1|0.12|ENSG00000100592|chr14:59326040-59326040|T/-|frameshift_variant	nc|ENSG00000146122|Q86T65-4|DAAM2;nc|ENSG00000100592|Q9Y4D1-3|DAAM1	nc|ENSG00000100592|Q9Y4D1-3|DAAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.286865234375	2	527.286754	1052.55896	-0.95331	-0.00050267	3.3079	0.0017442	2.3546	0.0012416	527.2881196723811	29.894	0.61205	29.972	29.646	30.258	0.078344					25	14	3	0	0	0	0.027866	1	1860	1860		18.324	0	1	428280			58926	5858;2224	41330	41393	64287	64287					0.034778303905568464
PMRKCVSLY	9	Unmodified	_PMRKCVSLY_					0	0	0		ENST00000462733.5_1_17:17919314-17919425:-|nuORF	ENST00000462733.5_1_17:17919314-17919425:-|nuORF	ENST00000462733.5_1_17:17919314-17919425:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.7728881835938	2	548.78573	1095.55691	-0.15797	-8.6691E-05	-0.66546	-0.0003652	-0.82343	-0.00045189	548.7852582883276	35.933	0.43631	35.716	35.544	35.981	-0.21661					20	12	2	0	0	0	0.024436	1	2737	2737		23.042	0	1	384780			58927	14715	41331	41394	64288	64288					0.01295033590440653
PMRPVRPLL	9	Unmodified	_PMRPVRPLL_					0	0	0			REV__ENST00000314028.10_1_17:80201107-80201266:-|nuORF	REV__ENST00000314028.10_1_17:80201107-80201266:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.3081665039062	2	539.831329	1077.6481	-1.1838	-0.00063903	2.7045	0.00146	1.5207	0.00082093	539.8311827125223	64.693	0.8809	64.739	64.448	65.329	0.045502					60	23	4	0	0	0	0.024506	1	7507	7507		23.042	3.939	1	2482100	+		58928	30237	41332	41395	64289	64289					0.11238665350060728
PMSKQRPSP	9	Unmodified	_PMSKQRPSP_					0	0	0			REV__ENST00000291295.13_1_19:47112728-47112953:+|nuORF	REV__ENST00000291295.13_1_19:47112728-47112953:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3037109375	2	514.271301	1026.52805	0.73568	0.00037834	-4.4368	-0.0022817	-3.7012	-0.0019034	514.2688128248491	63.102	0.92326	63.156	62.845	63.768	0.054104					39	24	2	0	0	0	0.023454	1	7293	7293		62.107	3.8775	1	635190	+		58929	29940	41333	41396	64290	64290					0.01584632285630505
PMSSSQVRTSD	11	Oxidation (M)	_PM(Oxidation (M))SSSQVRTSD_		PM(1)SSSQVRTSD		PM(51)SSSQVRTSD	0	0	1		nc|ENSG00000036672|O75604-2|USP2;nc|ENSG00000036672|O75604-3|USP2;nc|ENSG00000036672|O75604-4|USP2;ENSG00000036672|ENST00000260187|USP2	nc|ENSG00000036672|O75604-2|USP2	nc|ENSG00000036672|O75604-2|USP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.773681640625	2	605.772059	1209.52957	-1.1142	-0.00067493	4.1426	0.0025095	3.0284	0.0018345	605.774633816189	69.292	2.1726	69.292	67.908	70.081	0					162	56	7	0	0	0	0.90725	1	8438	8438		51.193	6.8155	1	2591400			58930	1043	41334	41397	64291	64291		32			-0.06681823206918125
PMTSSYGFPD	10	Unmodified	_PMTSSYGFPD_					0	0	0			REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3088989257812	2	551.231507	1100.44846	-0.60751	-0.00033488	2.9264	0.0016131	2.3189	0.0012782	551.2331699371873	50.107	0.52134	50.107	49.656	50.178	0					17	14	2	0	0	0	0.03519	1	5151	5151		40.778	16.575	1	131620	+		58931	28194	41335	41398	64292	64292					-0.09774479179009177
PMVNRSKL	8	Unmodified	_PMVNRSKL_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|27	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.29473876953125	2	472.770937	943.527321	-0.11079	-5.2381E-05	0.083599	3.9523E-05	-0.027196	-1.2858E-05	472.7707924736267	40.964	0.45832	40.736	40.508	40.966	-0.2278					17	11	2	0	0	0	0.027866	1	3565	3565		73.975	10.668	1	235490	+		58932	19468	41336	41399	64293	64293					0.05329837636600132
PMVVDHISY	9	Unmodified	_PMVVDHISY_					0	0	0			REV__nc|ENSG00000091127|Q96PZ0-2|PUS7	REV__nc|ENSG00000091127|Q96PZ0-2|PUS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7756958007812	2	530.760235	1059.50592	-0.19558	-0.00010381	-1.3973	-0.00074163	-1.5929	-0.00084544	530.7592328662754	56.983	0.33009	56.781	56.596	56.926	-0.20209					11	8	2	0	0	0	0.02309	1	6220	6220		68.485	33.284	1	135430	+		58933	20898	41337	41400	64294	64294					-0.021455921827737257
PMWHLLLKI	9	Unmodified	_PMWHLLLKI_					0	0	0			REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2	REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8439331054688	2	575.843905	1149.67326	-0.05705	-3.2852E-05	-1.6117	-0.00092808	-1.6687	-0.00096093	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.85941	1	10923	10923		35.201	1.0282	1	1877500	+		58934	23918	41338	41401	64295	64295					0.10440720152632821
PMWVEWIL	8	Unmodified	_PMWVEWIL_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3232421875	2	537.278063	1072.54157	-0.93755	-0.00050373	-0.97643	-0.00052461	-1.914	-0.0010283	537.2758152450066	80.986	0.9255	80.986	80.746	81.671	0					37	22	3	0	0	0	0.027866	1	10163	10163		31.579	0	1	168950	+		58935	21051	41339	41402	64296	64296					0.008204900648706825
PMYAAKSMIV	10	Unmodified	_PMYAAKSMIV_					0	0	0			REV__ENSG00000278889|ENST00000341959|OR2S2	REV__ENSG00000278889|ENST00000341959|OR2S2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.7896118164062	2	555.787938	1109.56132	0.6261	0.00034798	1.8584	0.0010329	2.4845	0.0013809	555.7889361158149	105.64	0.48285	105.64	105.41	105.89	0					23	13	3	0	0	0	1.0236	1	13571	13571		42.864	0.46813	1	182230	+		58936	29224	41340	41403	64297	64297					0.010924980133040663
PMYFFLFNLS	10	Oxidation (M)	_PM(Oxidation (M))YFFLFNLS_		PM(1)YFFLFNLS		PM(62)YFFLFNLS	0	0	1		ENSG00000094661|ENST00000641398|OR1I1;OR8B4|p.G252Wfs*34|1|0.78|ENSG00000280090|chr11:124424118-124424119|-/A|frameshift_variant;ENSG00000170953|ENST00000306842|OR8B12;ENSG00000280090|ENST00000356130|OR8B4	ENSG00000094661|ENST00000641398|OR1I1;ENSG00000170953|ENST00000306842|OR8B12;ENSG00000280090|ENST00000356130|OR8B4	ENSG00000170953|ENST00000306842|OR8B12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	647.8120727539062	2	647.812467	1293.61038	-0.76603	-0.00049625	-0.80509	-0.00052155	-1.5711	-0.0010178	647.8119789604525	62.913	1.5886	62.654	62.368	63.956	-0.25824					104	43	4	0	0	0	0.77808	1	7083	7083		62.107	7.3851	1	11044000			58937	8097;2007;11076	41341	41404	64298	64298		73			-0.024678904260781565
PMYHSYAF	8	Unmodified	_PMYHSYAF_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|102|2|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|102|2|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|102|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.801025390625	2	508.220746	1014.42694	0.29255	0.00014868	-3.8126	-0.0019377	-3.5201	-0.001789	508.218575663827	37.019	1.1123	36.81	36.201	37.313	-0.2092					33	27	2	0	0	0	0.027866	1	2911	2911		37.028	10.232	1	66603			58938	17889	41342	41405	64299	64299					-0.07969819417075996
PMYSSMPHV	9	Unmodified	_PMYSSMPHV_					0	0	0			REV__ENSG00000113805|ENST00000263665|CNTN3	REV__ENSG00000113805|ENST00000263665|CNTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.7705078125	2	524.733163	1047.45177	-0.62272	-0.00032676	-2.2338	-0.0011721	-2.8565	-0.0014989	524.7318266946447	30.484	0.66231	30.558	30.087	30.75	0.074316					20	9	3	0	0	0	0.024487	1	1901	1901		40.573	28.366	1	238490	+		58939	22091	41343	41406	64300	64300					-0.07005507606004358
PMYSSMPHV	9	Unmodified	_PMYSSMPHV_					0	0	0			REV__ENSG00000113805|ENST00000263665|CNTN3	REV__ENSG00000113805|ENST00000263665|CNTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.733163	1047.45177	-0.62083	-0.00032577	-3.6043	-0.0018913	-4.2251	-0.0022171	524.7312401305106	30.875	0.46506	30.634	30.41	30.875	-0.24109	-0.051955	-0.00035771	NaN	24.203	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232240	+		58940	22091	41343	41406							-0.07005507606004358
PMYSSMPHV	9	Unmodified	_PMYSSMPHV_					0	0	0			REV__ENSG00000113805|ENST00000263665|CNTN3	REV__ENSG00000113805|ENST00000263665|CNTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.733163	1047.45177	-0.54659	-0.00028681	-3.4672	-0.0018194	-4.0138	-0.0021062	524.7312081061928	30.811	0.50159	30.633	30.41	30.912	-0.17818	-0.052412	-0.00021387	NaN	24.203	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178340	+		58941	22091	41343	41406							-0.07005507606004358
PMYSSMPHV	9	Unmodified	_PMYSSMPHV_					0	0	0			REV__ENSG00000113805|ENST00000263665|CNTN3	REV__ENSG00000113805|ENST00000263665|CNTN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.733163	1047.45177	-0.061017	-3.2018E-05	-4.1667	-0.0021864	-4.2277	-0.0022184	524.7309012482898	30.845	0.41778	30.692	30.511	30.928	-0.15231	0.0067498	-0.00094789	NaN	24.203	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234860	+		58942	22091	41343	41406							-0.07005507606004358
PNAHIYLY	8	Unmodified	_PNAHIYLY_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A;nc|ENSG00000143498|Q15573-2|TAF1A;ENST00000480065.1_1_1:222742724-222743894:-|nuORF	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.80523681640625	2	495.75581	989.497067	0.22336	0.00011073	0.98525	0.00048845	1.2086	0.00059918	495.7563980567972	89.849	0.45329	89.862	89.55	90.004	0.013443					13	10	2	0	0	0	0.027866	1	11282	11282		35.201	10.998	1	53100			58943	5655	41344	41407	64301	64301					0.0018980224303959403
PNAIKTIQKN	10	Unmodified	_PNAIKTIQKN_					0	0	0		nc|ENSG00000124253|P35558-2|PCK1;ENSG00000124253|ENST00000319441|PCK1	nc|ENSG00000124253|P35558-2|PCK1	nc|ENSG00000124253|P35558-2|PCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.3135375976562	2	563.83258	1125.65061	1.0884	0.00061368	2.0642	0.0011639	3.1526	0.0017775	563.8336049678354	59.869	0.80104	59.672	59.38	60.181	-0.19742					48	20	4	0	0	0	0.03519	1	6595	6595		29.17	4.9673	1	1134300			58944	4035	41345	41408	64302	64302					0.09280792288700468
PNAKLEPLSLI	11	Unmodified	_PNAKLEPLSLI_					0	0	0			REV__ENSG00000185043|ENST00000328649|CIB1	REV__ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8563232421875	2	597.858264	1193.70197	0.028254	1.6892E-05	-2.7647	-0.0016529	-2.7364	-0.001636	598.3585788626698	90.988	1.6784	90.848	90.115	91.794	-0.13942					112	39	3	0	0	0	1.0075	1	11108	11108		35.152	0	1	2547700	+		58945	27727	41346	41409	64303	64303					0.11287116262769814
PNALQEPEI	9	Unmodified	_PNALQEPEI_					0	0	0			REV__ENSG00000152977|ENST00000282928|ZIC1	REV__ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.7605285644531	2	505.761289	1009.50803	-0.0038285	-1.9363E-06	-1.8441	-0.00093269	-1.848	-0.00093462	505.7605623678543	107.24	0.67344	107.11	106.68	107.35	-0.1238					51	22	3	0	0	0	0.96322	1	13346	13346		27.882	1.0861	1	321480	+		58946	24873	41347	41410	64304	64304					0.0036515982666287528
PNALQEPEI	9	Unmodified	_PNALQEPEI_					0	0	0			REV__ENSG00000152977|ENST00000282928|ZIC1	REV__ENSG00000152977|ENST00000282928|ZIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7608337402344	2	505.761289	1009.50803	0.38767	0.00019607	-1.8076	-0.00091424	-1.42	-0.00071817	505.76042662558916	107.37	0.44624	107.21	106.88	107.32	-0.15771					38	16	3	0	0	0	0.89441	1	13317	13317		32.812	3.6629	1	279770	+		58947	24873	41347	41410	64305	64305					0.0036515982666287528
PNAMDKLIVQ	10	Unmodified	_PNAMDKLIVQ_					0	0	0		ENST00000278198.2_1_11:40314286-40314472:-|nuORF	ENST00000278198.2_1_11:40314286-40314472:-|nuORF	ENST00000278198.2_1_11:40314286-40314472:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.8103637695312	2	564.807716	1127.60088	0.7181	0.00040559	4.3215	0.0024408	5.0396	0.0028464	564.809984906992	108.38	0.43178	108.38	108.14	108.58	0					66	21	4	0	0	0	1.0344	1	13862	13862		41.427	2.6205	1	9239700			58948	11700	41348	41411	64306	64306					0.042183412884014615
PNASSLYRR	9	Unmodified	_PNASSLYRR_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.8165283203125	2	532.285797	1062.55704	0.33029	0.00017581	2.3361	0.0012435	2.6664	0.0014193	532.2867843720671	85.118	0.53542	84.969	84.666	85.201	-0.14967					21	12	2	0	0	0	0.024344	1	10343	10343		45.972	6.7194	1	148040	+		58949	20368	41349	41412	64307	64307					0.02826492906274325
PNASSLYRR	9	Unmodified	_PNASSLYRR_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.285797	1062.55704	-0.78096	-0.00041569	3.2466	0.0017281	2.4656	0.0013124	532.2873824616948	85.207	0.53987	85.149	84.857	85.397	-0.05761	0.096362	0.00067028	NaN	45.972	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528230	+		58950	20368	41349	41412							0.02826492906274325
PNCDTLLSC	9	Unmodified	_PNCDTLLSC_					0	0	0			REV__ENSG00000170142|ENST00000306627|UBE2E1	REV__ENSG00000170142|ENST00000306627|UBE2E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.8798522949219	2	483.206978	964.399403	-0.6862	-0.00033158	4.1835	0.0020215	3.4973	0.0016899	483.2089466271181	43.808	0.39831	43.589	43.35	43.749	-0.21939					17	10	2	0	0	0	0.024263	1	4045	4045		34.173	8.7224	1	237520	+		58951	26429	41350	41413	64308	64308					-0.08422090739611576
PNCDVLALQ	9	Unmodified	_PNCDVLALQ_					0	0	0			REV__KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant	REV__KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.778076171875	2	486.744585	971.474617	-0.39804	-0.00019374	-0.19357	-9.422E-05	-0.59161	-0.00028796	486.7439364044877	56.553	0.35381	56.553	56.424	56.778	0					11	9	2	0	0	0	0.024405	1	6301	6301		44.117	31.158	1	57792	+		58952	24524	41351	41414	64309	64309					-0.012261652168945147
PNCFPQWLN	9	Unmodified	_PNCFPQWLN_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|5	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|5	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.75732421875	2	559.758027	1117.5015	0.14965	8.3766E-05	-1.2173	-0.00068141	-1.0677	-0.00059765	559.757003614254	71.608	0.68591	71.346	71.075	71.761	-0.26199					40	16	3	0	0	0	0.94809	1	8378	8378		29.15	3.5755	1	1145600			58953	420	41352	41415	64310	64310					-0.05255056605687969
PNCKLVACCV	10	Unmodified	_PNCKLVACCV_					0	0	0			REV__nc|ENSG00000147862|O00712-4|NFIB	REV__nc|ENSG00000147862|O00712-4|NFIB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7877197265625	2	525.250665	1048.48678	-0.63099	-0.00033143	3.7216	0.0019548	3.0906	0.0016233	525.75396016758	29.408	0.16914	29.235	29.156	29.325	-0.17258					5	3	2	0	0	0	0.03519	1	1800	1800		27.882	3.6795	1	18827	+		58954	36766	41353	41416	64311	64311					-0.03552588069715057
PNDSKDIL	8	Unmodified	_PNDSKDIL_					0	0	0		KIF18A|p.N793S|1|0.43|ENSG00000121621|chr11:28036235-28036235|T/C|missense_variant	KIF18A|p.N793S|1|0.43|ENSG00000121621|chr11:28036235-28036235|T/C|missense_variant	KIF18A|p.N793S|1|0.43|ENSG00000121621|chr11:28036235-28036235|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.91644287109375	2	451.234907	900.455261	0.20476	9.2394E-05	0.96109	0.00043368	1.1658	0.00052607	451.2350601746864	24.133	0.99665	24.211	23.78	24.777	0.078346					49	21	4	0	0	0	0.027866	1	996	996		31.53	0	1	77104			58955	17798	41354	41417	64312	64312					0.0010520176386989988
PNECDCVM	8	Unmodified	_PNECDCVM_					0	0	0			REV__ENST00000547636.1_1_12:44915767-44917277:-|nuORF	REV__ENST00000547636.1_1_12:44915767-44917277:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.1608581542969	2	455.658806	909.30306	-0.38707	-0.00017637	4.4709	0.0020372	4.0839	0.0018608	455.6607337684962	66.932	0.65518	66.687	66.496	67.152	-0.24517					34	19	2	0	0	0	1.0574	1	7684	7684		18.324	0.95945	1	991350	+		58956	27688	41355	41418	64313	64313					-0.15521981571214383
PNEGTHVI	8	Unmodified	_PNEGTHVI_					0	0	0			REV__ZNF708|p.K278N|1|0.31|ENSG00000182141|chr19:21294132-21294132|T/G|missense_variant	REV__ZNF708|p.K278N|1|0.31|ENSG00000182141|chr19:21294132-21294132|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.7762145996094	2	433.721967	865.429381	0.01791	7.768E-06	-0.67337	-0.00029205	-0.65546	-0.00028429	433.7219195507268	31.448	0.7283	31.296	30.928	31.657	-0.15231					26	18	2	0	0	0	0.027866	1	2123	2123		51.335	23.453	1	207460	+		58957	37818	41356	41419	64314	64314					-0.00871647687768018
PNEIHGKKLY	10	Unmodified	_PNEIHGKKLY_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.2229309082031	3	400.224146	1197.65061	0.22117	8.8516E-05	-2.6404	-0.0010567	-2.4192	-0.00096822	400.223106086583	31.953	0.82946	31.964	31.583	32.413	0.011797					33	20	2	0	0	0	1.0814	1	2159	2159		35.178	2.4277	1	1239300	+		58958	20018	41357	41420	64315	64315					0.0596879228871785
PNEIHGKKLY	10	Unmodified	_PNEIHGKKLY_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	400.224146	1197.65061	0.96113	0.00038467	-3.3037	-0.0013222	-2.3426	-0.00093756	400.2228400113714	32.025	1.0411	32.025	31.749	32.79	0	0.15164	-0.00013603	NaN	35.178	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1067700	+		58959	20018	41357	41420							0.0596879228871785
PNEIHGKKLY	10	Unmodified	_PNEIHGKKLY_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	400.224146	1197.65061	0.22117	8.8516E-05	-2.6404	-0.0010567	-2.4192	-0.00096822	400.223106086583	31.953	0.82946	31.964	31.583	32.413	0.011797	0.090701	0.00066044	NaN	35.178	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1239300	+		58960	20018	41357	41420							0.0596879228871785
PNEIHGKKLY	10	Unmodified	_PNEIHGKKLY_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	400.224146	1197.65061	2.4358	0.00097486	-3.3294	-0.0013325	-0.89359	-0.00035764	400.22221502736346	31.669	1.2397	31.738	31.082	32.321	0.068962	-0.13589	-0.00016685	NaN	35.178	131	30	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1369800	+		58961	20018	41357	41420							0.0596879228871785
PNEIHGKKLY	10	Unmodified	_PNEIHGKKLY_					0	0	0			REV__ENSG00000024526|ENST00000456315|DEPDC1	REV__ENSG00000024526|ENST00000456315|DEPDC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.224146	1197.65061	-0.78604	-0.00031459	-9.9881	-0.0039975	-10.774	-0.0043121	400.2200519793279	31.925	0.58378	31.767	31.451	32.035	-0.15772	-0.10645	-0.0081618	NaN	35.178	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124610	+		58962	20018	41357	41420							0.0596879228871785
PNELPAHLL	9	Unmodified	_PNELPAHLL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7367248535156	2	502.282192	1002.54983	-0.29352	-0.00014743	2.9653	0.0014894	2.6717	0.001342	502.2840028608483	19.757	0.57696	19.639	19.2	19.777	-0.11872					14	11	2	0	0	0	0.024477	1	395	395		35.618	5.1146	1	15179			58963	911	41358	41421	64316	64316					0.048657603058586574
PNELPAHLL	9	Unmodified	_PNELPAHLL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.282192	1002.54983	0.19938	0.00010015	-4.431	-0.0022256	-4.2316	-0.0021255	502.78199998621193	19.689	0.23075	19.689	19.6	19.831	0	0.025179	-0.0037707	NaN	35.618	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11807			58964	911	41358	41421							0.048657603058586574
PNEQYNDL	8	Unmodified	_PNEQYNDL_					0	0	0			REV__nc|ENSG00000136425|O75838-4|CIB2	REV__nc|ENSG00000136425|O75838-4|CIB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.7180480957031	2	496.719621	991.42469	-0.436	-0.00021657	-3.4508	-0.0017141	-3.8868	-0.0019306	496.71801832498005	28.13	1.4206	28.13	27.653	29.073	0					92	34	5	0	0	0	0.83003	1	1638	1638		56.721	10.769	1	4488400	+		58965	36695	41359	41422	64317	64317					-0.0713657662120113
PNERAIVK	8	Unmodified	_PNERAIVK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.3031311035156	2	463.774534	925.534515	-0.1449	-6.72E-05	-0.79032	-0.00036653	-0.93521	-0.00043373	463.7742205608735	35.346	0.46358	35.13	34.913	35.377	-0.21556					20	11	2	0	0	0	0.027866	1	2651	2651		49.442	8.6634	1	228690			58966	8490	41360	41423	64318	64318					0.06876893508649573
PNESTPIGIL	10	Unmodified	_PNESTPIGIL_					0	0	0			REV__ENSG00000172380|ENST00000370982|GNG12	REV__ENSG00000172380|ENST00000370982|GNG12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7839965820312	2	520.784764	1039.55498	-0.17121	-8.9164E-05	-0.92176	-0.00048004	-1.093	-0.0005692	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	0.98754	1	13562	13562		47.657	3.1263	1	7199700	+		58967	26667	41361	41424	64319	64319					0.03678019377821329
PNFNFSDA	8	Unmodified	_PNFNFSDA_					0	0	0			REV__nc|ENSG00000132437|P20711-2|DDC	REV__nc|ENSG00000132437|P20711-2|DDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2585144042969	2	456.198325	910.382096	-0.023524	-1.0732E-05	-2.5993	-0.0011858	-2.6229	-0.0011965	456.19721582575596	32.308	0.18727	32.371	32.278	32.465	0.062885					7	4	2	0	0	0	0.027866	1	2188	2188		51.335	5.3835	1	23635	+		58968	23280	41362	41425	64320	64320					-0.07667926958765747
PNFNPPQDH	9	Unmodified	_PNFNPPQDH_					0	0	0		ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2420043945312	2	533.241055	1064.46756	-1.3364	-0.00071263	0.81209	0.00043304	-0.52433	-0.00027959	533.2414660107185	34.103	0.98783	33.928	33.583	34.571	-0.17557					79	24	5	0	0	0	0.70186	1	2454	2454		45.952	4.5253	1	5840100			58969	2304	41363	41426	64321	64321					-0.06209761773106948
PNFRDSPATP	10	Unmodified	_PNFRDSPATP_					0	0	0		ENST00000563517.5_1_15:43663326-43663422:+|nuORF	ENST00000563517.5_1_15:43663326-43663422:+|nuORF	ENST00000563517.5_1_15:43663326-43663422:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2401123046875	2	551.269813	1100.52507	-1.1229	-0.00061903	-2.2342	-0.0012316	-3.3571	-0.0018506	551.2681333359284	83.894	1.2402	83.803	83.129	84.369	-0.090454					44	28	2	0	0	0	0.03519	1	10373	10373		21.96	0	1	120080			58970	16869	41364	41427	64322	64322					-0.021169195675156516
PNFRPALV	8	Unmodified	_PNFRPALV_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2640075683594	2	457.266345	912.518136	-0.063203	-2.8901E-05	-3.6571	-0.0016723	-3.7203	-0.0017012	457.26459602525	78.772	1.7484	78.58	78.135	79.884	-0.1921					79	41	2	0	0	0	1.0133	1	9739	9739		35.201	1.6851	1	810240			58971	1440	41365	41428	64323	64323					0.05837812342554116
PNFVKKNL	8	Unmodified	_PNFVKKNL_					0	0	0		ENSG00000158966|ENST00000651257|CACHD1;nc|ENSG00000158966|Q5VU97-2|CACHD1	ENSG00000158966|ENST00000651257|CACHD1	ENSG00000158966|ENST00000651257|CACHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.76715087890625	2	480.287277	958.560001	-0.0035139	-1.6877E-06	-0.25868	-0.00012424	-0.26219	-0.00012593	480.2870822556746	36.475	0.57642	36.475	36.229	36.805	0					34	15	3	0	0	0	0.027866	1	2928	2928		42.474	10.52	1	512040			58972	6712	41366	41429	64324	64324					0.07906368031081001
PNGGLHKALD	10	Unmodified	_PNGGLHKALD_					0	0	0			REV__ENST00000428753.1_1_10:71335725-71335860:+|nuORF	REV__ENST00000428753.1_1_10:71335725-71335860:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2964172363281	2	511.274898	1020.53524	0.87806	0.00044893	3.0165	0.0015423	3.8946	0.0019912	511.276195840531	63.1	0.67475	63.155	62.845	63.519	0.054104					28	17	2	0	0	0	0.03519	1	7245	7245		39.253	22.78	1	292690	+		58973	32324	41367	41430	64325	64325					0.025796881576980013
PNGGSHIQ	8	Unmodified	_PNGGSHIQ_					0	0	0			REV__ENSG00000180626|ENST00000575779|ZNF594	REV__ENSG00000180626|ENST00000575779|ZNF594	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.9062805175781	2	405.198659	808.382765	0.23727	9.6141E-05	-0.49006	-0.00019857	-0.2528	-0.00010243	405.19832642280784	22.836	0.55316	22.761	22.458	23.011	-0.075296					15	11	2	0	0	0	0.027866	1	808	808		44.117	12.162	1	29988	+		58974	27350	41368	41431	64326	64326					-0.029090875190604493
PNGIATIVAL	10	Unmodified	_PNGIATIVAL_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.271240234375	2	484.792392	967.570232	1.1539	0.00055943	-0.33133	-0.00016063	0.82262	0.0003988	484.7921841463997	64.068	0.50169	64.068	63.845	64.347	0					25	13	3	0	0	0	0.03519	1	7494	7494		20.947	8.7401	1	355660	+		58975	20725	41369	41432	64327	64327					0.08514930965668555
PNGNLDIKW	9	Unmodified	_PNGNLDIKW_					0	0	0			REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7797241210938	2	528.777274	1055.53999	0.4027	0.00021294	-0.28138	-0.00014879	0.12133	6.4155E-05	528.7769515502151	50.136	0.56421	49.955	49.681	50.245	-0.18071					41	14	4	0	0	0	0.2101	1	5071	5071		87.696	2.5356	1	1359900	+		58976	27168	41370	41433	64328	64328					0.01444572300465552
PNGNLDIKW	9	Unmodified	_PNGNLDIKW_					0	0	0			REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	528.777274	1055.53999	0.0019239	1.0173E-06	0.01408	7.4452E-06	0.016004	8.4626E-06	528.7771669065987	49.997	0.56723	49.891	49.635	50.202	-0.10558	-0.069305	-4.4598E-06	NaN	87.696	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1079300	+		58977	27168	41370	41433							0.01444572300465552
PNGNLDIKW	9	Unmodified	_PNGNLDIKW_					0	0	0			REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.777274	1055.53999	-0.25419	-0.00013441	0.28612	0.0001513	0.031936	1.6887E-05	528.7773060738102	50.315	0.56619	50.035	49.729	50.295	-0.27977	0.074685	0.00028324	NaN	87.696	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1257200	+		58978	27168	41370	41433							0.01444572300465552
PNGNLDIKW	9	Unmodified	_PNGNLDIKW_					0	0	0			REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	REV__nc|ENSG00000178125|Q7Z4L9-2|PPP1R42	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	528.777274	1055.53999	0.4027	0.00021294	-0.28138	-0.00014879	0.12133	6.4155E-05	528.7769515502151	50.136	0.56421	49.955	49.681	50.245	-0.18071	-0.0053804	-0.00031692	NaN	87.696	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1359900	+		58979	27168	41370	41433							0.01444572300465552
PNGQHLASR	9	Unmodified	_PNGQHLASR_					0	0	0		MAPKBP1|p.G491R|1|0.27|ENSG00000137802|chr15:41815759-41815759|G/C|missense_variant	MAPKBP1|p.G491R|1|0.27|ENSG00000137802|chr15:41815759-41815759|G/C|missense_variant	MAPKBP1|p.G491R|1|0.27|ENSG00000137802|chr15:41815759-41815759|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.25927734375	2	490.25704	978.499526	-0.31257	-0.00015324	2.1994	0.0010783	1.8868	0.00092504	490.2580796986626	105.36	1.7838	105.23	104.38	106.16	-0.12444					153	55	4	0	0	0	0.72875	1	13203	13203		44.117	1.7207	1	4889800			58980	17950	41371	41434	64329	64329					0.009416507007017572
PNGTASLIQPL	11	Unmodified	_PNGTASLIQPL_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7677001953125	2	555.811313	1109.60807	0.51671	0.00028719	2.6451	0.0014702	3.1618	0.0017573	555.8124420633959	96.549	0.30837	96.413	96.304	96.613	-0.1367					9	6	2	0	0	0	0.024736	1	11918	11918		22.58	1.6327	1	32250			58981	10131	41372	41435	64330	64330					0.057653971604850085
PNGTASLIQPL	11	Unmodified	_PNGTASLIQPL_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.811313	1109.60807	0.35509	0.00019737	3.482	0.0019353	3.8371	0.0021327	555.8130438256715	96.727	0.74883	96.734	96.397	97.146	0.0068817	0.075126	0.00057165	NaN	22.58	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240180			58982	10131	41372	41435							0.057653971604850085
PNGTASLIQPL	11	Unmodified	_PNGTASLIQPL_					0	0	0		nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.K687Efs*5|1|0.17|ENSG00000198399|chr2:24275736-24275737|-/T|frameshift_variant;ITSN2|p.P1055Tfs*2|1|0.29|ENSG00000198399|chr2:24248840-24248841|-/T|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.811313	1109.60807	1.1467	0.00063735	2.5342	0.0014085	3.6809	0.0020459	555.8125938028415	96.829	0.75113	96.829	96.484	97.235	-3.0518E-05	0.17083	-0.0004819	NaN	22.58	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301740			58983	10131	41372	41435							0.057653971604850085
PNGVNALAI	9	Unmodified	_PNGVNALAI_					0	0	0			REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7433166503906	2	434.747985	867.481417	-0.23908	-0.00010394	0.95855	0.00041673	0.71947	0.00031279	434.74824473773606	33.448	0.56499	33.448	33.251	33.816	0					20	15	2	0	0	0	0.024354	1	2391	2391		30.504	0	1	188450	+		58984	20966	41373	41436	64331	64331					0.0423751572599258
PNGVNALAI	9	Unmodified	_PNGVNALAI_					0	0	0			REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	434.747985	867.481417	-0.062858	-2.7327E-05	3.3813	0.00147	3.3184	0.0014427	434.74972602439965	33.608	0.92114	33.377	32.916	33.837	-0.23107	0.035821	0.0017705	NaN	30.504	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110300	+		58985	20966	41373	41436							0.0423751572599258
PNGVNALAI	9	Unmodified	_PNGVNALAI_					0	0	0			REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	434.747985	867.481417	-0.2488	-0.00010817	2.7415	0.0011918	2.4927	0.0010837	434.7495860757586	33.454	0.57781	33.254	33.056	33.634	-0.20019	-0.087932	0.0012142	NaN	30.504	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174400	+		58986	20966	41373	41436							0.0423751572599258
PNGVNALAI	9	Unmodified	_PNGVNALAI_					0	0	0			REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	434.747985	867.481417	-0.62451	-0.00027151	3.7953	0.00165	3.1708	0.0013785	434.74996842276914	33.454	0.67401	33.289	32.998	33.672	-0.16565	-0.053007	0.0021305	NaN	30.504	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203590	+		58987	20966	41373	41436							0.0423751572599258
PNHERRWF	8	Unmodified	_PNHERRWF_					0	0	0			REV__ENST00000520999.6_1_11:44881945-44919311:+|nuORF	REV__ENST00000520999.6_1_11:44881945-44919311:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2265014648438	2	571.286131	1140.55771	0.37452	0.00021396	-1.2104	-0.00069147	-0.83585	-0.00047751	571.2851330586811	50.809	0.55571	50.533	50.335	50.891	-0.27643					30	14	3	0	0	0	0.027866	1	5191	5191		33.516	0	1	466390	+		58988	34308	41374	41437	64332	64332					-0.006946676540110275
PNHIIEPPLS	10	Unmodified	_PNHIIEPPLS_					0	0	0			REV__nc|ENSG00000140937|P55287-2|CDH11	REV__nc|ENSG00000140937|P55287-2|CDH11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.3348388671875	2	558.806031	1115.59751	-0.51497	-0.00028777	0.54645	0.00030536	0.031482	1.7592E-05	558.805547349797	48.514	0.51878	48.514	48.311	48.83	0					20	14	2	0	0	0	0.03519	1	5007	5007		40.778	0	1	99918	+		58989	36720	41375	41438	64333	64333					0.04433414506047484
PNHWTIVPG	9	Unmodified	_PNHWTIVPG_					0	0	0			REV__ENSG00000239961|ENST00000291759|LILRA4	REV__ENSG00000239961|ENST00000291759|LILRA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7645568847656	2	510.766709	1019.51886	-0.36983	-0.0001889	-3.9004	-0.0019922	-4.2702	-0.0021811	510.76462508879587	25.704	0.62082	25.533	25.247	25.867	-0.17078					38	15	4	0	0	0	0.59099	1	1242	1242		53.351	2.016	1	1468100	+		58990	28957	41376	41439	64334	64334					0.00988606991609231
PNIEILRPG	9	Unmodified	_PNIEILRPG_					0	0	0			REV__nc|ENSG00000172508|A5YM72|CARNS1	REV__nc|ENSG00000172508|A5YM72|CARNS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7138671875	2	504.795466	1007.57638	-0.5233	-0.00026416	0.37849	0.00019106	-0.14481	-7.3101E-05	504.7955869962444	32.397	0.58506	32.239	31.778	32.363	-0.15772					20	13	2	0	0	0	0.024511	1	2173	2173		19.104	0	1	179310	+		58991	26680	41377	41440	64335	64335					0.0728944919718515
PNIEILRPG	9	Unmodified	_PNIEILRPG_					0	0	0			REV__nc|ENSG00000172508|A5YM72|CARNS1	REV__nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	504.795466	1007.57638	0.31245	0.00015772	-0.14911	-7.5269E-05	0.16334	8.2452E-05	504.79515524517166	32.464	0.64305	32.271	31.814	32.457	-0.19261	0.036416	-0.0003506	NaN	19.104	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124770	+		58992	26680	41377	41440							0.0728944919718515
PNIQQTPK	8	Unmodified	_PNIQQTPK_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.27490234375	2	463.258717	924.50288	0.42897	0.00019873	1.6306	0.00075539	2.0596	0.00095411	463.25919601214565	21.018	0.34328	20.822	20.632	20.975	-0.19577					9	6	2	0	0	0	0.027866	1	618	618		18.324	0	1	27688			58993	10835	41378	41441	64336	64336					0.037609007547075635
PNIYELRSYQ	10	Unmodified	_PNIYELRSYQ_					0	0	0		nc|ENSG00000146729|O75323-2|NIPSNAP2;ENSG00000146729|ENST00000322090|NIPSNAP2	nc|ENSG00000146729|O75323-2|NIPSNAP2	nc|ENSG00000146729|O75323-2|NIPSNAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2195739746094	3	428.21906	1281.63535	0.16465	7.0506E-05	0.75014	0.00032123	0.91479	0.00039173	428.2193814912294	27.528	1.4615	27.371	27.104	28.565	-0.15664					84	35	5	0	0	0	1.0997	1	1515	1515		32.751	2.1817	1	2370900			58994	5904	41379	41442	64337	64337					0.0057988070086594234
PNIYVDRVIK	10	Unmodified	_PNIYVDRVIK_					0	0	0		ENSG00000198754|ENST00000327582|OXCT2	ENSG00000198754|ENST00000327582|OXCT2	ENSG00000198754|ENST00000327582|OXCT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8751220703125	3	406.239796	1215.69756	0.53022	0.0002154	0.90057	0.00036585	1.4308	0.00058124	406.24002050594135	19.818	0.53545	19.657	19.381	19.916	-0.1608					22	10	3	0	0	0	0.03519	1	469	469		28.081	0	1	135370			58995	10189	41380	41443	64338	64338					0.09833651839835511
PNKDEKAR	8	Unmodified	_PNKDEKAR_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.R1307Q|1|0.07|ENSG00000125676|chrX:123621453-123621453|C/T|missense_variant;nc|ENSG00000125676|Q8NI27-2|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.800048828125	2	479.259248	956.503943	-0.27806	-0.00013326	-0.15554	-7.4545E-05	-0.4336	-0.00020781	479.2590769476938	26.311	1.2355	26.392	26.01	27.245	0.081293					44	30	2	0	0	0	0.027866	1	1373	1373		71.296	0	1	680310			58996	4127	41381	41444	64339	64339					0.023951151236133228
PNKDEKAR	8	Unmodified	_PNKDEKAR_					0	0	0		ENSG00000125676|ENST00000245838|THOC2;THOC2|p.R1307Q|1|0.07|ENSG00000125676|chrX:123621453-123621453|C/T|missense_variant;nc|ENSG00000125676|Q8NI27-2|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8001403808594	2	479.259248	956.503943	-0.24807	-0.00011889	0.29047	0.00013921	0.042398	2.032E-05	479.25918893979684	27.093	0.59933	26.936	26.586	27.185	-0.15664					33	13	3	0	0	0	0.027866	1	1468	1468		87.754	16.459	1	286790			58997	4127	41381	41444	64340	64340					0.023951151236133228
PNKFGRYL	8	Unmodified	_PNKFGRYL_					0	0	0			REV__nc|ENSG00000120049|Q9NS61-7|KCNIP2	REV__nc|ENSG00000120049|Q9NS61-7|KCNIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2655944824219	2	497.777077	993.5396	-0.1701	-8.4674E-05	-2.2722	-0.0011311	-2.4424	-0.0012157	497.77555847372776	87.087	0.33382	86.95	86.746	87.08	-0.13734					20	7	4	0	0	0	0.027866	1	10582	10582		26.796	0	1	392820	+		58998	36610	41382	41445	64341	64341					0.04257197371271104
PNKGEKALL	9	Unmodified	_PNKGEKALL_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.289794921875	2	485.290017	968.565481	0.015206	7.3795E-06	0.10368	5.0314E-05	0.11888	5.7693E-05	485.2899375033756	34.58	0.83198	34.356	34.033	34.865	-0.22412					52	20	4	0	0	0	0.10174	1	2574	2574		110.12	13.929	1	2291300	+		58999	20471	41383	41446	64342	64342					0.07994046822898326
PNKGEKALL	9	Unmodified	_PNKGEKALL_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2897644042969	2	485.290017	968.565481	-0.25188	-0.00012223	0.41554	0.00020166	0.16367	7.9425E-05	485.2901426210494	34.543	0.7662	34.336	34.005	34.771	-0.20696					52	18	4	0	0	0	0.086035	2	2561	2561;2574		115.49	13.893	1	2254200	+		59000	20471	41383	41446	64343;64344	64343					0.07994046822898326
PNKGLINLKN	10	Unmodified	_PNKGLINLKN_					0	0	0			REV__ENST00000471702.2_2_3:132406014-132407530:-|nuORF	REV__ENST00000471702.2_2_3:132406014-132407530:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.8369750976562	2	555.835123	1109.65569	-0.060099	-3.3405E-05	4.1476	0.0023054	4.0875	0.002272	555.8369335800946	106.39	0.67676	106.27	105.73	106.41	-0.1238					43	26	3	0	0	0	1.1267	1	13245	13245		29.15	1.2673	1	133600	+		59001	33182	41384	41447	64345	64345					0.10525096151309299
PNKKKTKK	8	Unmodified	_PNKKKTKK_					0	0	0		nc|ENSG00000116690|Q92954-6|PRG4;ENSG00000116690|ENST00000445192|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	nc|ENSG00000116690|Q92954-6|PRG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.8141174316406	2	486.321651	970.62875	0.29071	0.00014138	-0.71544	-0.00034793	-0.42473	-0.00020656	486.32115122273314	21.199	0.68489	21.009	20.735	21.42	-0.19072					31	13	4	0	0	0	0.027866	1	665	665		42.396	24.072	1	334810			59002	3566	41385	41448	64346	64346					0.14226032330805083
PNKKLCRLPP	10	Unmodified	_PNKKLCRLPP_					0	0	0		TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant;nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5	TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant	TDRD5|p.L636Cfs*16|1|0.46|ENSG00000162782|chr1:179650967-179650967|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.3511962890625	2	583.347343	1164.68013	-1.7055	-0.0009949	4.0718	0.0023753	2.3663	0.0013804	583.3496418186248	105.95	0.48483	105.82	105.56	106.04	-0.1328					61	20	4	0	0	0	1.1267	1	13186	13186		29.15	4.6304	1	702580			59003	6993	41386	41449	64347	64347					0.10438033033210559
PNKKLVSTK	9	Unmodified	_PNKKLVSTK_					0	0	0			REV__ENST00000525155.5_1_11:67832019-67832061:-|nuORF	REV__ENST00000525155.5_1_11:67832019-67832061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2793884277344	2	507.818941	1013.62333	-0.81422	-0.00041347	0.39112	0.00019862	-0.4231	-0.00021486	507.81903711288135	50.219	0.76722	50.219	49.842	50.609	0					56	22	4	0	0	0	0.02435	1	5191	5191		26.693	0	1	1937400	+		59004	34407	41387	41450	64348	64348					0.11706308748341598
PNKPPALSN	9	Unmodified	_PNKPPALSN_					0	0	0		ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7664794921875	2	469.258717	936.50288	-0.27329	-0.00012824	0.59839	0.0002808	0.32511	0.00015256	469.2587331513035	34.772	0.61861	34.75	34.357	34.976	-0.021763					21	15	2	0	0	0	0.024506	1	2643	2643		23.042	8.1776	1	141910			59005	3801	41388	41451	64349	64349					0.032089007547028814
PNKPPALSN	9	Unmodified	_PNKPPALSN_					0	0	0		ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	469.258717	936.50288	-0.323	-0.00015157	1.1118	0.00052172	0.78879	0.00037015	469.2589229446856	35.062	0.46076	35.062	34.668	35.129	0	0.12154	0.00048364	NaN	34.173	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147760			59006	3801	41388	41451							0.032089007547028814
PNKPPALSN	9	Unmodified	_PNKPPALSN_					0	0	0		ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	ENSG00000120256|ENST00000239367|LRP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.258717	936.50288	-0.32299	-0.00015157	-1.8141	-0.00085129	-2.1371	-0.0010029	469.2578224832756	35.259	0.46718	35.046	34.847	35.314	-0.21246	0.10621	-0.0022624	NaN	34.173	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86726			59007	3801	41388	41451							0.032089007547028814
PNKQTAKNP	9	Unmodified	_PNKQTAKNP_					0	0	0			REV__ENST00000348335.6_1_17:3788988-3796337:-|nuORF	REV__ENST00000348335.6_1_17:3788988-3796337:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.2749328613281	2	499.274898	996.535243	1.0325	0.00051552	-1.1633	-0.00058083	-0.1308	-6.5306E-05	499.27422415514826	20.144	1.1226	19.947	19.704	20.826	-0.19777					40	22	4	0	0	0	0.35646	2	504	504;515		68.787	9.3404	1	717290	+		59008	30712	41389	41452	64350;64351	64350					0.036836881577073655
PNLALCHVYI	10	Unmodified	_PNLALCHVYI_					0	0	0		ENST00000531338.5_1_11:134126482-134132106:+|nuORF	ENST00000531338.5_1_11:134126482-134132106:+|nuORF	ENST00000531338.5_1_11:134126482-134132106:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.8028564453125	2	571.804977	1141.5954	-0.16341	-9.3438E-05	-3.3414	-0.0019106	-3.5048	-0.0020041	571.8026465322533	97.478	0.8983	97.317	96.862	97.76	-0.16106					47	19	4	0	0	0	0.75995	2	12063	12034;12063		63.306	10.557	1	218730			59009	16255	41390	41453	64352;64353	64353					0.03026662496586141
PNLARAALKRE	11	Unmodified	_PNLARAALKRE_					0	0	0		nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.870028	1237.7255	-0.66003	-0.00040914	-0.31019	-0.00019228	-0.97023	-0.00060142	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0392	1	11531	11531		28.081	2.0181	1	5229800			59010	5833	41391	41454	64354	64354					0.11614974819917734
PNLGINLPLSI	11	Unmodified	_PNLGINLPLSI_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000592249.5_1_18:56620439-56651695:+|nuORF;ENST00000394628.2_1_10:79492938-79493973:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8432006835938	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0392	1	11178	11178		28.081	0.19925	1	5880000			59011	1533	41392	41455	64355	64355					0.10690847091291289
PNLGKKLLL	9	Unmodified	_PNLGKKLLL_					0	0	0		ENST00000266682.9_1_12:85306306-85306633:-|nuORF	ENST00000266682.9_1_12:85306306-85306633:-|nuORF	ENST00000266682.9_1_12:85306306-85306633:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.2725830078125	2	498.334227	994.653902	-0.1912	-9.528E-05	-0.5282	-0.00026322	-0.7194	-0.0003585	498.3337784364178	24.987	0.21776	24.812	24.733	24.95	-0.17484					6	4	2	0	0	0	0.024541	1	1134	1134		17.365	11.052	1	15903			59012	11611	41393	41456	64356	64356					0.15636087133384535
PNLIAHRRV	9	Unmodified	_PNLIAHRRV_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8184814453125	2	538.327799	1074.64105	0.30756	0.00016557	-1.5869	-0.00085427	-1.2793	-0.0006887	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.98697	1	12350	12350		23.042	2.0956	1	21168000			59013	10537	41394	41457	64357	64357					0.10671068793840277
PNLKCLDLSSN	11	Unmodified	_PNLKCLDLSSN_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	602.30322265625	2	602.305538	1202.59652	-0.86218	-0.0005193	-3.4173	-0.0020582	-4.2795	-0.0025775	602.3035732806084	30.877	1.4855	30.889	30.458	31.943	0.011797					101	35	5	0	0	0	0.75915	1	2026	2026		42.864	14.982	1	5988800			59014	5314	41395	41458	64358	64358					0.00332832074855105
PNLKELLL	8	Unmodified	_PNLKELLL_					0	0	0			REV__ENST00000606998.1_1_6:138189157-138189262:-|nuORF	REV__ENST00000606998.1_1_6:138189157-138189262:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2956848144531	2	470.29731	938.580068	0.42949	0.00020199	-3.8487	-0.00181	-3.4192	-0.001608	470.2956050534098	18.752	1.227	18.621	18.352	19.579	-0.13147					58	24	4	0	0	0	0.99042	1	352	352		38.806	1.647	1	4297100	+		59015	35941	41396	41459	64359	64359					0.10832118971052296
PNLKPKPN	8	Unmodified	_PNLKPKPN_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	453.28173828125	2	454.271627	906.528701	0.20579	9.3484E-05	-0.064897	-2.9481E-05	0.14089	6.4003E-05	454.2714785626251	49.778	0.41281	49.626	49.368	49.781	-0.1512					18	10	2	0	0	0	0.027866	1	5101	5101		18.324	0	1	178080			59016	18094	41397	41460	64360	64360					0.07169794996991641
PNLKWYMV	8	Unmodified	_PNLKWYMV_					0	0	0			REV__ENSG00000109501|ENST00000226760|WFS1	REV__ENSG00000109501|ENST00000226760|WFS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2972412109375	2	525.775688	1049.53682	0.11227	5.903E-05	-0.03062	-1.6099E-05	0.081653	4.2931E-05	526.2772008309604	85.675	0.54179	85.675	85.5	86.042	0					18	12	2	0	0	0	0.027866	1	10754	10754		28.254	0	1	156280	+		59017	21797	41398	41461	64361	64361					0.014036059221098185
PNLQEVYLNN	10	Unmodified	_PNLQEVYLNN_					0	0	0		nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1	nc|ENSG00000144749|Q96JA1-2|LRIG1	nc|ENSG00000144749|Q96JA1-2|LRIG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	602.3028564453125	2	602.303852	1202.59315	-0.86219	-0.0005193	-0.619	-0.00037283	-1.4812	-0.00089213	602.3035732806084	30.877	1.4855	30.889	30.458	31.943	0.011797					101	35	5	0	0	0	0.78438	1	1987	1987		32.812	0	1	5988800			59018	5765	41399	41462	64362	64362					-4.094707514923357E-05
PNLQVQLLIKN	11	Unmodified	_PNLQVQLLIKN_					0	0	0			REV__ENSG00000124019|ENST00000409685|FAM124B	REV__ENSG00000124019|ENST00000409685|FAM124B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.2647705078125	3	427.2626	1278.76597	0.1987	8.4896E-05	4.029	0.0017214	4.2277	0.0018063	427.26444300600974	54.063	2.6284	53.818	53.421	56.049	-0.2453					263	76	6	0	0	0	1.0563	1	5682	5682		23.378	1.6922	1	50149000	+		59019	22726	41400	41463	64363	64363					0.13773896419706944
PNLVHKRG	8	Unmodified	_PNLVHKRG_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.77447509765625	2	460.774868	919.535184	-0.83383	-0.00038421	0.68826	0.00031713	-0.14558	-6.7079E-05	460.77507103377	24.069	0.78853	24.022	23.699	24.487	-0.047146					48	17	4	0	0	0	1.0133	1	1005	1005		35.201	1.6851	1	1690600			59020	6977	41401	41464	64364	64364					0.07219732948374258
PNLVTSYWNLL	11	Unmodified	_PNLVTSYWNLL_					0	0	0			REV__nc|ENSG00000255374|P59539|TAS2R45	REV__nc|ENSG00000255374|P59539|TAS2R45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.2742614746094	3	440.571322	1318.69214	-0.35613	-0.0001569	-2.0536	-0.00090478	-2.4098	-0.0010617	440.5702127120881	43.357	1.0039	43.217	42.885	43.888	-0.13929					75	27	3	0	0	0	0.024792	1	3991	3991		9.2118	0	1	542740	+		59021	37176	41402	41465	64365	64365					0.04553928257382722
PNMPVRYFI	9	Unmodified	_PNMPVRYFI_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2;ENST00000512600.1_1_5:112919975-112927944:+|nuORF	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8109741210938	2	568.799694	1135.58484	-0.16496	-9.3828E-05	3.0678	0.001745	2.9028	0.0016511	568.8012505723432	56.513	0.78558	56.345	56.001	56.786	-0.1672					62	19	5	0	0	0	0.024506	1	6091	6091		30.504	12.179	1	1126400			59022	1097	41403	41466	64366	64366					0.0224667984214193
PNMQGVRMDP	10	Unmodified	_PNMQGVRMDP_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.1971435546875	2	572.765526	1143.5165	-0.12672	-7.2582E-05	-3.0793	-0.0017637	-3.206	-0.0018363	572.7637729514022	33.301	0.44073	33.07	32.752	33.193	-0.23107					17	10	2	0	0	0	0.03519	1	2342	2342		34.173	2.2177	1	128960			59023	3143	41404	41467	64367	64367					-0.04951932799986025
PNMQGVRMDP	10	Unmodified	_PNMQGVRMDP_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	572.765526	1143.5165	-0.77176	-0.00044204	-2.7078	-0.0015509	-3.4796	-0.001993	572.7639304006399	33.103	0.56121	32.937	32.76	33.321	-0.16565	-0.066744	0.00011737	NaN	34.173	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171680			59024	3143	41404	41467							-0.04951932799986025
PNMRWIIQ	8	Unmodified	_PNMRWIIQ_					0	0	0		ENST00000534047.5_1_11:10503676-10517278:+|nuORF;nc|ENSG00000133805|Q01432-6|AMPD3;nc|ENSG00000133805|Q01432-3|AMPD3;ENSG00000133805|ENST00000396553|AMPD3;nc|ENSG00000133805|Q01432-5|AMPD3;nc|ENSG00000133805|Q01432-4|AMPD3	ENST00000534047.5_1_11:10503676-10517278:+|nuORF	ENST00000534047.5_1_11:10503676-10517278:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7788696289062	2	529.284211	1056.55387	0.17803	9.4228E-05	2.748	0.0014545	2.926	0.0015487	529.2853545080832	86.558	0.52505	86.421	86.049	86.574	-0.13734					14	11	2	0	0	0	0.027866	1	10449	10449		18.324	0.8564	1	128660			59025	4732	41405	41468	64368	64368					0.027855265279185915
PNMTAMHPAHA	11	Unmodified	_PNMTAMHPAHA_					0	0	0			REV__nc|ENSG00000151615|Q12837-2|POU4F2	REV__nc|ENSG00000151615|Q12837-2|POU4F2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.2647094726562	2	589.265693	1176.51683	-1.1328	-0.00066752	-0.099132	-5.8415E-05	-1.2319	-0.00072594	589.2654451184401	66.355	0.4632	66.074	65.788	66.251	-0.28148					32	11	3	0	0	0	0.95882	1	7869	7869		45.972	0	1	1847500	+		59026	24783	41406	41469	64369	64369					-0.06436513080143413
PNMTRPVDD	9	Unmodified	_PNMTRPVDD_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7982177734375	2	522.742573	1043.47059	-0.17019	-8.8964E-05	-3.2336	-0.0016903	-3.4038	-0.0017793	522.7409944649622	61.945	0.70395	61.718	61.415	62.119	-0.22663					45	18	4	0	0	0	0.024495	1	7214	7214		19.997	0	1	1138100			59027	1507	41407	41470	64370	64370					-0.04940254710595582
PNMTRPVDD	9	Unmodified	_PNMTRPVDD_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.742573	1043.47059	-0.39353	-0.00020571	-3.0289	-0.0015833	-3.4224	-0.0017891	522.7410465796435	61.638	0.66208	61.709	61.434	62.096	0.071129	-0.035812	-0.00057526	NaN	19.997	50	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1244100			59028	1507	41407	41470							-0.04940254710595582
PNMTRPVDD	9	Unmodified	_PNMTRPVDD_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.742573	1043.47059	-0.3771	-0.00019713	0.68308	0.00035707	0.30597	0.00015995	522.7404918210108	61.951	0.63594	61.737	61.416	62.052	-0.21375	-0.0074338	0.0033056	NaN	19.997	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113220			59029	1507	41407	41470							-0.04940254710595582
PNMTRPVDD	9	Unmodified	_PNMTRPVDD_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.742573	1043.47059	-0.69414	-0.00036286	-1.9115	-0.00099923	-2.6057	-0.0013621	522.7408620406974	61.952	0.4664	61.774	61.536	62.003	-0.17782	0.029262	0.00059296	NaN	19.997	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123250			59030	1507	41407	41470							-0.04940254710595582
PNMTRPVDD	9	Unmodified	_PNMTRPVDD_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.742573	1043.47059	-0.0041934	-2.1921E-06	-1.9421	-0.0010152	-1.9463	-0.0010174	523.2439851905067	62.09	0.42989	61.832	61.588	62.018	-0.25725	0.087542	0.00056094	NaN	19.997	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100180			59031	1507	41407	41470							-0.04940254710595582
PNNKAKIGN	9	Unmodified	_PNNKAKIGN_					0	0	0		nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.26922607421875	2	478.269616	954.524678	0.84531	0.00040428	-0.53066	-0.0002538	0.31464	0.00015048	478.2693143749098	101.27	0.55231	101.14	100.86	101.41	-0.13156					27	11	3	0	0	0	0.98697	1	12574	12574		23.042	3.0457	1	433000			59032	4985	41408	41471	64371	64371					0.045597055032772005
PNNRDWPE	8	Unmodified	_PNNRDWPE_					0	0	0			REV__ENSG00000244482|ENST00000396365|LILRA6	REV__ENSG00000244482|ENST00000396365|LILRA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2635498046875	2	514.23323	1026.45191	0.070576	3.6292E-05	-1.7527	-0.00090129	-1.6821	-0.00086499	514.2322171291429	48.252	0.69145	48.065	47.825	48.516	-0.18684					42	18	3	0	0	0	0.027866	1	4728	4728		16.473	0	1	905780	+		59033	28620	41409	41472	64372	64372					-0.06026048290163999
PNPARSRLVAI	11	Unmodified	_PNPARSRLVAI_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.3590087890625	2	597.359296	1192.70404	0.52306	0.00031246	-1.2859	-0.00076816	-0.76286	-0.0004557	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	1.0521	1	12226	12226		24.519	0.99649	1	2779900			59034	1605	41410	41473	64373	64373					0.11539589791232174
PNPDPSKV	8	Unmodified	_PNPDPSKV_					0	0	0			REV__chr11:103089309-103091787|135|28.47|0.39|6.2|-|2|DCUN1D5,DCUN1D5|1	REV__chr11:103089309-103091787|135|28.47|0.39|6.2|-|2|DCUN1D5,DCUN1D5|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.2475280761719	2	427.224342	852.434132	0.18493	7.9007E-05	0.3045	0.00013009	0.48944	0.0002091	427.22437793577006	102.94	0.6343	102.81	102.5	103.13	-0.12783					23	14	2	0	0	0	0.027866	1	12847	12847		6.3127	0	1	436780	+		59035	19348	41411	41474	64374	64374					0.0020123645500689236
PNPGPPTPPSA	11	Unmodified	_PNPGPPTPPSA_					0	0	0		ENST00000378536.4_1_1:2240916-2241354:+|nuORF	ENST00000378536.4_1_1:2240916-2241354:+|nuORF	ENST00000378536.4_1_1:2240916-2241354:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3140258789062	2	516.261456	1030.50836	0.32733	0.00016899	4.4175	0.0022806	4.7449	0.0024496	516.262560710568	97.783	0.2131	97.793	97.684	97.897	0.010231					6	4	2	0	0	0	0.024774	1	12453	12453		54.722	7.065	1	82133			59036	13240	41412	41475	64375	64375					-0.005674204534670935
PNPHIFRY	8	Unmodified	_PNPHIFRY_					0	0	0			REV__nc|ENSG00000143194|Q96JY0-2|MAEL	REV__nc|ENSG00000143194|Q96JY0-2|MAEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.29052734375	2	522.274701	1042.53485	-0.41158	-0.00021496	-0.10258	-5.3577E-05	-0.51416	-0.00026853	522.2743540028409	65.804	0.57562	65.563	65.372	65.947	-0.24145					14	13	2	0	0	0	0.027866	1	7558	7558		19.36	4.4951	1	159600	+		59037	24209	41413	41476	64376	64376					0.015283132285276224
PNPPPTGPPTT	11	Unmodified	_PNPPPTGPPTT_					0	0	0			REV__ENST00000512871.1_1_5:126859171-126859306:+|nuORF	REV__ENST00000512871.1_1_5:126859171-126859306:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3270874023438	2	538.274564	1074.53457	-0.75416	-0.00040595	3.3536	0.0018051	2.5994	0.0013992	538.7792666858422	99.736	0.15453	99.565	99.451	99.605	-0.17088					5	3	2	0	0	0	0.024797	1	12352	12352		54.722	14.15	1	23080	+		59038	25723	41414	41477	64377	64377					0.0002884871798869426
PNPRTLVHAA	10	Unmodified	_PNPRTLVHAA_					0	0	0		ENSG00000177363|ENST00000317449|LRRN4CL	ENSG00000177363|ENST00000317449|LRRN4CL	ENSG00000177363|ENST00000317449|LRRN4CL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.3274536132812	2	538.30399	1074.59343	-0.34255	-0.0001844	-0.32612	-0.00017555	-0.66867	-0.00035995	538.3036585211128	99.76	0.20636	99.755	99.651	99.857	-0.0050888					6	4	2	0	0	0	0.03519	1	12693	12693		26.693	0	1	142120			59039	8731	41415	41478	64378	64378					0.05911369802993249
PNPTGLLLPAP	11	Unmodified	_PNPTGLLLPAP_					0	0	0		ENST00000497387.5_1_3:9971427-9975274:+|nuORF	ENST00000497387.5_1_3:9971427-9975274:+|nuORF	ENST00000497387.5_1_3:9971427-9975274:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3173217773438	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.018	1	11089	11089		32.812	3.6424	1	11601000			59040	15591	41416	41479	64379	64379					0.08222889028456848
PNPVSLPPD	9	Unmodified	_PNPVSLPPD_					0	0	0		ENST00000243776.10_1_2:220403755-220404097:-|nuORF	ENST00000243776.10_1_2:220403755-220404097:-|nuORF	ENST00000243776.10_1_2:220403755-220404097:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2448425292969	2	468.245275	934.475997	-0.29637	-0.00013877	-0.71762	-0.00033602	-1.014	-0.00047479	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	0.89441	1	13224	13224		32.812	2.3088	1	6721300			59041	11295	41417	41480	64380	64380					0.006137921435083626
PNQAAPTTPP	10	Unmodified	_PNQAAPTTPP_					0	0	0		nc|ENSG00000141084|Q6VN20-2|RANBP10;nc|ENSG00000141084|Q6VN20-3|RANBP10	nc|ENSG00000141084|Q6VN20-2|RANBP10	nc|ENSG00000141084|Q6VN20-2|RANBP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2652282714844	2	497.253631	992.49271	-0.88211	-0.00043863	2.7414	0.0013632	1.8593	0.00092456	497.25393149570135	37.603	0.6277	37.54	37.342	37.97	-0.063385					35	17	3	0	0	0	0.03519	1	3037	3037		49.536	0	1	384490			59042	18338	41418	41481	64381	64381					-0.0038370697054688208
PNQIGYWW	8	Unmodified	_PNQIGYWW_					0	0	0		ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	ENST00000533210.5_1_8:144649355-144650416:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2924194335938	2	532.253434	1062.49232	-0.33295	-0.00017721	-3.1908	-0.0016983	-3.5238	-0.0018755	532.2514437880592	29.972	1.055	29.822	29.501	30.556	-0.14952					43	24	3	0	0	0	0.027866	1	1833	1833		35.201	4.6971	1	423060			59043	16312	41419	41482	64382	64382					-0.03643081899713252
PNQLLAWM	8	Unmodified	_PNQLLAWM_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7770080566406	2	486.752213	971.489873	-0.64118	-0.00031209	-3.9641	-0.0019296	-4.6053	-0.0022416	486.75029717787976	30.15	0.77749	30.159	29.677	30.455	0.0086708					42	18	3	0	0	0	0.027866	1	1837	1837		35.201	7.3185	1	254270	+		59044	24211	41420	41483	64383	64383					0.002987463709587246
PNQLLAWM	8	Unmodified	_PNQLLAWM_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.752213	971.489873	0.11404	5.5509E-05	-1.942	-0.00094528	-1.828	-0.00088977	486.7502045169573	30.079	0.43038	29.929	29.626	30.056	-0.14952	-0.096856	0.0015863	NaN	42.474	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42709	+		59045	24211	41420	41483							0.002987463709587246
PNQPNKSPP	9	Unmodified	_PNQPNKSPP_					0	0	0			REV__nc|ENSG00000173193|Q460N5-1|PARP14	REV__nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.3365173339844	2	489.753798	977.493044	-0.58522	-0.00028661	-1.9415	-0.00095087	-2.5267	-0.0012375	489.753736886922	81.517	1.0851	81.386	80.897	81.982	-0.13075					41	26	2	0	0	0	0.024495	1	10126	10126		19.997	4.355	1	72267	+		59046	26750	41421	41484	64384	64384					0.0033971274932582674
PNQRRKEK	8	Unmodified	_PNQRRKEK_					0	0	0		nc|ENSG00000170873|O43312-2|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7793579101562	2	528.307064	1054.59957	1.1539	0.00060964	-3.807	-0.0020112	-2.653	-0.0014016	528.3051282241532	17.361	0.35011	17.207	17.057	17.408	-0.15403					10	6	3	0	0	0	0.027866	1	163	163		44.117	16.035	1	83391			59047	18508	41422	41485	64385	64385					0.07445888034499148
PNQSRDWQ	8	Unmodified	_PNQSRDWQ_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2883911132812	2	515.73868	1029.46281	-0.28869	-0.00014889	0.15305	7.8932E-05	-0.13564	-6.9955E-05	515.7386120967491	39.859	1.6108	39.629	38.732	40.343	-0.2302					84	42	3	0	0	0	0.027866	1	3442	3442		45.952	8.7928	1	485250	+		59048	27225	41423	41486	64386	64386					-0.05074645915874498
PNQVHRKS	8	Unmodified	_PNQVHRKS_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;nc|ENSG00000108387|O43236-4|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-3|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-2|SEPTIN4;ENSG00000184702|ENST00000455784|SEPTIN5;ENST00000477238.1_1_22:19707079-19707537:+|nuORF;nc|ENSG00000284874|Q99719-2|SEPTIN5;nc|ENSG00000108387|O43236-6|SEPTIN4;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4	nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000108387|ENST00000672673|SEPTIN4	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.646484375	2	483.267407	964.520262	-0.658	-0.00031799	2.8944	0.0013988	2.2364	0.0010808	483.2686250888903	48.985	0.83492	48.705	48.288	49.123	-0.27977					32	22	2	0	0	0	0.027866	1	4824	4824		37.159	0	1	330900			59049	7815;2893	41424	41487	64387	64387					0.036582410803816856
PNREGFVLL	9	Unmodified	_PNREGFVLL_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7967529296875	2	522.795466	1043.57638	-0.04255	-2.2245E-05	2.3707	0.0012394	2.3281	0.0012171	522.7967223459124	39.042	2.5625	38.817	37.785	40.347	-0.2257					174	69	4	0	0	0	0.67687	1	3276	3276		47.657	8.4045	1	2377000	+		59050	23649	41425	41488	64388	64388					0.056334491971938405
PNRIIIKG	8	Unmodified	_PNRIIIKG_					0	0	0			REV__RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	REV__RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2582702636719	2	455.795269	909.575986	-0.19823	-9.0354E-05	0.55371	0.00025238	0.35548	0.00016202	455.79523627562975	31.91	0.51845	31.922	31.702	32.221	0.011797					21	12	2	0	0	0	0.027866	1	2179	2179		40.573	8.6178	1	491510	+		59051	25491	41426	41489	64389	64389					0.11758074267993379
PNRIVSGI	8	Unmodified	_PNRIVSGI_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2559509277344	2	428.255977	854.497401	-1.0349	-0.00044318	0.69463	0.00029748	-0.34022	-0.0001457	428.2562786282324	44.493	1.0635	44.493	44.183	45.246	0					85	30	4	0	0	0	0.93274	1	4255	4255		47.916	0	1	13449000	+		59052	20842	41427	41490	64390	64390					0.0643322196290228
PNRKVGSLW	9	Unmodified	_PNRKVGSLW_					0	0	0		ENST00000430546.1_1_2:168671597-168726282:-|nuORF	ENST00000430546.1_1_2:168671597-168726282:-|nuORF	ENST00000430546.1_1_2:168671597-168726282:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.8218994140625	2	528.801083	1055.58761	0.28082	0.0001485	-2.1694	-0.0011472	-1.8886	-0.0009987	528.7997157907582	32.879	0.49224	32.942	32.69	33.182	0.062885					29	12	3	0	0	0	0.024541	1	2233	2233		24.203	15.971	1	246020			59053	14174	41428	41491	64391	64391					0.06204271291335317
PNRKVGSLW	9	Unmodified	_PNRKVGSLW_					0	0	0		ENST00000430546.1_1_2:168671597-168726282:-|nuORF	ENST00000430546.1_1_2:168671597-168726282:-|nuORF	ENST00000430546.1_1_2:168671597-168726282:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.801083	1055.58761	-1.3104	-0.00069293	-0.27034	-0.00014295	-1.5807	-0.00083588	528.8007224556491	33.104	0.45259	33.104	32.903	33.356	0	0.092989	0.00097893	NaN	30.504	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302410			59054	14174	41428	41491							0.06204271291335317
PNRKVGSLW	9	Unmodified	_PNRKVGSLW_					0	0	0		ENST00000430546.1_1_2:168671597-168726282:-|nuORF	ENST00000430546.1_1_2:168671597-168726282:-|nuORF	ENST00000430546.1_1_2:168671597-168726282:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.801083	1055.58761	-0.98043	-0.00051845	-0.80422	-0.00042527	-1.7846	-0.00094372	528.8004198144278	32.98	0.87309	32.987	32.776	33.649	0.0066261	-0.023973	0.00041429	NaN	30.504	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303860			59055	14174	41428	41491							0.06204271291335317
PNRLAPPL	8	Unmodified	_PNRLAPPL_					0	0	0			REV__ENST00000475564.5_1_9:140711309-140711564:+|nuORF	REV__ENST00000475564.5_1_9:140711309-140711564:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2665710449219	2	439.266345	876.518136	0.40112	0.0001762	-0.15652	-6.8755E-05	0.2446	0.00010744	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	1.0017	1	3970	3970		37.028	8.7742	1	3207400	+		59056	33294	41429	41492	64392	64392					0.07493812342568162
PNRLPLLE	8	Unmodified	_PNRLPLLE_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.266357421875	2	476.284734	950.554916	-0.42719	-0.00020346	3.2272	0.0015371	2.8	0.0013336	476.2864642542697	31.629	0.3152	31.477	31.342	31.657	-0.15231					12	7	2	0	0	0	0.027866	1	2103	2103		26.796	1.3459	1	127290			59057	8195	41430	41493	64393	64393					0.07766064168470166
PNRLPTALFNS	11	Unmodified	_PNRLPTALFNS_					0	0	0		nc|ENSG00000205084|Q9H6L2-2|TMEM231;ENST00000561809.1_1_16:75579966-75590016:-|nuORF	nc|ENSG00000205084|Q9H6L2-2|TMEM231	nc|ENSG00000205084|Q9H6L2-2|TMEM231	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.5243835449219	3	410.559417	1228.65642	-0.51874	-0.00021297	3.5197	0.001445	3.0009	0.0012321	410.89630269042493	55.196	0.30566	55.05	54.948	55.254	-0.14609					11	8	2	0	0	0	0.024735	1	5941	5941		16.53	0.6092	1	88259			59058	18668	41431	41494	64394	64394					0.05123890800359732
PNRLRTTI	8	Unmodified	_PNRLRTTI_					0	0	0			REV__nc|ENSG00000158486|Q8TD57|DNAH3	REV__nc|ENSG00000158486|Q8TD57|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77703857421875	2	485.793258	969.571963	-1.4389	-0.00069899	-3.9564	-0.001922	-5.3953	-0.002621	485.7911558493821	29.875	0.56458	29.875	29.652	30.216	0					24	13	3	0	0	0	0.027866	1	1896	1896		24.203	0	1	179980	+		59059	36819	41432	41495	64395	64395					0.08595984774274257
PNRPPRSPV	9	Unmodified	_PNRPPRSPV_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8040771484375	2	510.290882	1018.56721	0.39535	0.00020174	-2.7385	-0.0013974	-2.3431	-0.0011957	510.29050039776524	97.258	0.96251	97.267	97.015	97.978	0.0089111					28	21	2	0	0	0	0.024457	1	12463	12463		15.642	0	1	37334	+		59060	25152	41433	41496	64396	64396					0.05867100631519406
PNRPYCRFG	9	Unmodified	_PNRPYCRFG_					0	0	0			REV__nc|ENSG00000115380|Q12805-5|EFEMP1	REV__nc|ENSG00000115380|Q12805-5|EFEMP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7849731445312	2	555.269093	1108.52363	0.2367	0.00013143	0.48037	0.00026673	0.71707	0.00039816	555.2689661413428	43.492	0.39772	43.523	43.267	43.664	0.030823					14	10	2	0	0	0	0.024535	1	4002	4002		12.207	0	1	156040	+		59061	22200	41434	41497	64397	64397					-0.026288321372931023
PNRSTMPP	8	Unmodified	_PNRSTMPP_					0	0	0		ENSG00000165325|ENST00000298050|DEUP1;nc|ENSG00000165325|Q05D60-2|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2615051269531	2	450.22382	898.433086	-0.31673	-0.0001426	-3.2805	-0.001477	-3.5973	-0.0016196	450.2221625466291	41.661	0.5402	41.433	41.159	41.699	-0.2278					21	13	2	0	0	0	0.027866	1	3664	3664		53.351	2.016	1	164810			59062	7400	41435	41498	64398	64398					-0.02019301185544009
PNRVTIYIKVY	11	Unmodified	_PNRVTIYIKVY_					0	0	0			REV__ENSG00000165409|ENST00000298171|TSHR	REV__ENSG00000165409|ENST00000298171|TSHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.279296875	3	455.934484	1364.78162	-0.017625	-8.0358E-06	-0.70528	-0.00032156	-0.72291	-0.0003296	455.93378446215263	24.55	0.41862	24.334	24.044	24.463	-0.2151					17	9	3	0	0	0	0.02477	1	1094	1094		28.577	12.047	1	56001	+		59063	25884	41436	41499	64399	64399					0.11382182936722529
PNRVTIYIKVY	11	Unmodified	_PNRVTIYIKVY_					0	0	0			REV__ENSG00000165409|ENST00000298171|TSHR	REV__ENSG00000165409|ENST00000298171|TSHR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	455.934484	1364.78162	-0.17775	-8.1041E-05	-1.0217	-0.00046583	-1.1995	-0.00054687	456.26853920900203	24.322	0.28916	24.147	23.963	24.252	-0.17484	-0.086034	0.00088166	NaN	28.577	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93659	+		59064	25884	41436	41499							0.11382182936722529
PNRVTIYIKVY	11	Unmodified	_PNRVTIYIKVY_					0	0	0			REV__ENSG00000165409|ENST00000298171|TSHR	REV__ENSG00000165409|ENST00000298171|TSHR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	455.934484	1364.78162	2.0983	0.00095668	-3.3233	-0.0015152	-1.225	-0.00055853	456.26734237237656	24.398	0.48106	24.217	23.893	24.374	-0.18089	-0.015506	-0.0022665	NaN	28.577	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57018	+		59065	25884	41436	41499							0.11382182936722529
PNSITLRR	8	Unmodified	_PNSITLRR_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.79107666015625	2	478.785433	955.556313	0.45594	0.0002183	1.3774	0.00065946	1.8333	0.00087776	478.7861760660646	45.96	0.66188	45.863	45.597	46.259	-0.096653					32	17	3	0	0	0	0.027866	1	4374	4374		45.972	8.8131	1	386320	+		59066	24500	41437	41500	64400	64400					0.07675698257230579
PNSLADDID	9	Unmodified	_PNSLADDID_					0	0	0		nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1;ENST00000476203.2_1_1:78269082-78324778:+|nuORF	nc|ENSG00000180488|Q8NAN2-2|MIGA1	nc|ENSG00000180488|Q8NAN2-2|MIGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.297607421875	2	480.219454	958.424355	0.13083	6.2825E-05	0.50404	0.00024205	0.63487	0.00030487	480.2195254673296	49.688	1.0225	49.536	49.043	50.065	-0.1512					48	27	2	0	0	0	0.024205	1	5116	5116		44.117	0	1	213960			59067	8982	41438	41501	64401	64401					-0.0565199634105511
PNSLECTY	8	Carbamidomethyl (C)	_PNSLEC(Carbamidomethyl (C))TY_	PNSLEC(1)TY		PNSLEC(51)TY		0	1	0		nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1	nc|ENSG00000099250|O14786-3|NRP1	nc|ENSG00000099250|O14786-3|NRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2106018066406	2	492.210575	982.406597	0.094728	4.6626E-05	0.09287	4.5712E-05	0.1876	9.2338E-05	492.2104926636556	49.695	0.98178	49.415	49.049	50.031	-0.27977					59	25	4	0	0	0	0.89627	1	4975	4975		51.335	8.861	1	4618300			59068	2064	41439	41502	64402	64402	27				-0.08531034867553444
PNSLKRFL	8	Unmodified	_PNSLKRFL_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7906188964844	2	487.792727	973.5709	-0.96209	-0.0004693	-3.3876	-0.0016524	-4.3497	-0.0021217	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	1.0338	1	10283	10283		31.955	0	1	1891000	+		59069	20764	41440	41503	64403	64403					0.08305770405377189
PNSLLAPL	8	Unmodified	_PNSLLAPL_					0	0	0		ENSG00000099769|ENST00000215539|IGFALS;nc|ENSG00000099769|P35858-2|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.746337890625	2	412.747453	823.480354	-0.24401	-0.00010072	-2.7496	-0.0011349	-2.9936	-0.0012356	412.7462093954923	84.44	1.6819	84.368	83.7	85.382	-0.072769					103	39	4	0	0	0	1.0338	1	10518	10518		31.955	0	1	6858600			59070	2080	41441	41504	64404	64404					0.06155301357091503
PNSLQRYHLND	11	Unmodified	_PNSLQRYHLND_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2481689453125	3	452.893347	1355.65821	0.032451	1.4697E-05	2.0839	0.0009438	2.1164	0.0009585	452.89433812052044	33.875	0.50272	33.875	33.626	34.129	0					22	12	2	0	0	0	0.02477	1	2448	2448		8.4073	0	1	141080			59071	10871	41442	41505	64405	64405					-0.005391001816860808
PNSQLFPPSTL	11	Unmodified	_PNSQLFPPSTL_					0	0	0			REV__ENST00000260264.8_1_11:120189625-120190027:+|nuORF	REV__ENST00000260264.8_1_11:120189625-120190027:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	3	400.880156	1199.61864	1.6143	0.00064715	-3.1505	-0.001263	-1.5362	-0.00061584	401.21362781747615	22.216	0.72211	22.29	21.931	22.653	0.073954					25	14	2	0	0	0	0.024795	1	676	676		60.167	8.6392	1	26452	+		59072	29596	41443	41506	64406	64406					0.026813798149305512
PNSQLFPPSTL	11	Unmodified	_PNSQLFPPSTL_					0	0	0			REV__ENST00000260264.8_1_11:120189625-120190027:+|nuORF	REV__ENST00000260264.8_1_11:120189625-120190027:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	3	400.880156	1199.61864	2.277	0.0009128	3.6606	0.0014674	5.9376	0.0023802	400.8815409792119	21.542	0.77334	21.614	21.205	21.978	0.071487					40	15	5	0	0	0	0.024795	1	676	676		60.167	8.6392	1	244700	+		59073	29596	41443	41506	64407	64407					0.026813798149305512
PNSRKLKK	8	Unmodified	_PNSRKLKK_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.79498291015625	2	485.811451	969.608348	0.37169	0.00018057	-0.68785	-0.00033417	-0.31616	-0.00015359	485.81123816028884	18.764	0.44568	18.561	18.312	18.757	-0.20371					16	8	3	0	0	0	0.027866	1	340	340		21.96	0	1	37827	+		59074	24428	41444	41507	64408	64408					0.12232861670997863
PNSSVLRRIKV	11	Unmodified	_PNSSVLRRIKV_					0	0	0		ENST00000461701.5_1_11:64681291-64681627:-|nuORF	ENST00000461701.5_1_11:64681291-64681627:-|nuORF	ENST00000461701.5_1_11:64681291-64681627:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.8925170898438	2	634.893503	1267.77245	-0.8856	-0.00056226	-0.78632	-0.00049923	-1.6719	-0.0010615	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.0483	1	13045	13045		25.574	3.6142	1	1402800			59075	14689	41445	41508	64409	64409					0.1492783437106482
PNSVSLII	8	Unmodified	_PNSVSLII_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.7520751953125	2	421.752736	841.490919	0.073709	3.1087E-05	-2.951	-0.0012446	-2.8772	-0.0012135	421.75139966300867	76.927	4.4392	76.659	74.403	78.842	-0.26806					171	107	3	0	0	0	1.0133	1	9191	9191		35.201	0	1	397960		+	59076	6216	41446	41509	64410	64410					0.06383284011531032
PNSVSLII	8	Unmodified	_PNSVSLII_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	421.752736	841.490919	-0.2463	-0.00010388	-2.7949	-0.0011788	-3.0412	-0.0012827	421.7514394093715	77.065	3.7019	76.854	74.912	78.614	-0.21087	0.15165	0.00013409	NaN	35.201	138	92	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356680		+	59077	6216	41446	41509							0.06383284011531032
PNSVSLII	8	Unmodified	_PNSVSLII_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	421.752736	841.490919	0.21971	9.2663E-05	-3.3588	-0.0014166	-3.139	-0.0013239	421.7512865004258	76.762	2.0565	76.594	75.119	77.176	-0.16853	-0.10851	-0.00034148	NaN	35.201	87	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242900		+	59078	6216	41446	41509							0.06383284011531032
PNTCQSLSAHP	11	Unmodified	_PNTCQSLSAHP_					0	0	0			REV__ENST00000380649.7_1_2:26413987-26414122:-|nuORF	REV__ENST00000380649.7_1_2:26413987-26414122:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.78564453125	2	577.76658	1153.51861	-0.81803	-0.00047263	0.9974	0.00057627	0.17938	0.00010364	577.7669288002835	34.674	0.59425	34.49	34.244	34.838	-0.18342					33	14	3	0	0	0	0.024752	1	2535	2535		19.104	0	1	732660	+		59079	31489	41447	41510	64411	64411					-0.0520118079052736
PNTIKQTY	8	Unmodified	_PNTIKQTY_					0	0	0			REV__nc|ENSG00000154556|O94875-10|SORBS2	REV__nc|ENSG00000154556|O94875-10|SORBS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2375793457031	2	482.758549	963.502546	-0.21314	-0.00010289	0.042131	2.0339E-05	-0.171	-8.2554E-05	482.7584034947766	69.784	0.62694	69.517	69.247	69.874	-0.26724					35	14	3	0	0	0	0.027866	1	8130	8130		27.882	6.9353	1	836430	+		59080	36801	41448	41511	64412	64412					0.019334810348595965
PNVERYSGVG	10	Unmodified	_PNVERYSGVG_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7250366210938	2	539.269813	1076.52507	-0.77059	-0.00041556	3.0302	0.0016341	2.2596	0.0012185	539.2713617519843	25.18	0.98535	24.953	24.246	25.231	-0.22683					36	22	2	0	0	0	0.03519	1	1184	1184		5.9211	0	1	64480	+		59081	27757	41449	41512	64413	64413					-0.010129195675290248
PNVILLLLL	9	Unmodified	_PNVILLLLL_					0	0	0			REV__nc|ENSG00000133110|Q15063-7|POSTN	REV__nc|ENSG00000133110|Q15063-7|POSTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2321472167969	2	504.346803	1006.67905	-0.95911	-0.00048372	3.1338	0.0015805	2.1747	0.0010968	504.34832927830354	44.552	0.54129	44.308	43.975	44.516	-0.2444					18	14	2	0	0	0	0.024541	1	4182	4182		13.775	5.544	1	89104	+	+	59082	23351	41450	41513	64414	64414					0.175981419359573
PNVMIMQP	8	Unmodified	_PNVMIMQP_					0	0	0		ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2842102050781	2	465.232799	928.451044	-0.28821	-0.00013409	1.4719	0.00068477	1.1837	0.00055068	465.2326640023409	24.878	0.306	24.651	24.581	24.887	-0.22683					15	6	3	0	0	0	0.027866	1	1126	1126		33.516	1.5607	1	81446			59083	11083	41451	41514	64415	64415					-0.016043022550434216
PNVSLNQFSNP	11	Unmodified	_PNVSLNQFSNP_					0	0	0			REV__ENST00000597301.5_1_19:14828435-14828537:+|nuORF	REV__ENST00000597301.5_1_19:14828435-14828537:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2026062011719	3	406.20341	1215.5884	1.6229	0.00065921	-3.6758	-0.0014931	-2.0529	-0.0008339	406.2018038899567	17.593	0.39863	17.439	17.259	17.658	-0.15403					19	7	4	0	0	0	1.0215	1	205	205		32.034	4.9868	1	101830	+		59084	35801	41452	41515	64416	64416					-0.01076978850278465
PNVTFIRN	8	Unmodified	_PNVTFIRN_					0	0	0			REV__nc|ENSG00000134324|Q14693|LPIN1	REV__nc|ENSG00000134324|Q14693|LPIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.76715087890625	2	480.766709	959.518865	0.31574	0.0001518	-0.63117	-0.00030344	-0.31543	-0.00015165	480.76628466762816	36.666	1.8832	36.666	35.531	37.414	0					109	50	3	0	0	0	0.74904	1	2928	2928		63.306	4.5243	1	5909600	+		59085	23439	41453	41516	64417	64417					0.03748606991609904
PNWTIMVPV	9	Unmodified	_PNWTIMVPV_					0	0	0			REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF	REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3287353515625	2	528.78097	1055.54739	0.38679	0.00020453	-4.0181	-0.0021247	-3.6313	-0.0019202	528.7788228496623	77.99	0.57652	77.779	77.461	78.037	-0.21087					21	13	2	0	0	0	0.024405	1	9618	9618		35.618	5.3006	1	145200	+		59086	28975	41454	41517	64418	64418					0.021835885765312923
PNWTIMVPV	9	Unmodified	_PNWTIMVPV_					0	0	0			REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF	REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3289184570312	2	528.78097	1055.54739	-0.36421	-0.00019259	-3.2181	-0.0017017	-3.5823	-0.0018943	528.779046460428	77.8	0.53661	77.816	77.578	78.115	0.015915					23	12	3	0	0	0	0.024436	1	9559	9559		30.504	0.6621	1	183550	+		59087	28975	41454	41517	64419	64419					0.021835885765312923
PNYKKPVL	8	Unmodified	_PNYKKPVL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7976989746094	2	479.789653	957.564752	1.0614	0.00050923	-3.6237	-0.0017386	-2.5623	-0.0012294	479.787380506963	18.725	0.29695	18.569	18.396	18.693	-0.15637					8	5	2	0	0	0	0.027866	1	318	318		13.775	0	1	33465			59088	10074	41455	41518	64420	64420					0.0842725217385123
PNYKKPVL	8	Unmodified	_PNYKKPVL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.789653	957.564752	2.3937	0.0011485	-6.5222	-0.0031293	-4.1285	-0.0019808	479.78653754244937	19.038	0.29602	18.805	18.632	18.928	-0.23345	0.11796	-0.00046675	NaN	33.516	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33779			59089	10074	41455	41518							0.0842725217385123
PNYVNGPSI	9	Unmodified	_PNYVNGPSI_					0	0	0		nc|ENSG00000115607|O95256-2|IL18RAP;ENSG00000115607|ENST00000687160|IL18RAP	nc|ENSG00000115607|O95256-2|IL18RAP	nc|ENSG00000115607|O95256-2|IL18RAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2755126953125	2	480.742899	959.471246	-0.65406	-0.00031443	1.5448	0.00074266	0.89076	0.00042823	480.7432736423976	43.983	0.44709	43.983	43.8	44.247	0					14	12	2	0	0	0	0.02435	1	4150	4150		42.396	13.247	1	113900			59090	3473	41456	41519	64421	64421					-0.010110919992371237
PPAEVLSL	8	Unmodified	_PPAEVLSL_					0	0	0		ENST00000593854.5_1_19:7709481-7711320:+|nuORF	ENST00000593854.5_1_19:7709481-7711320:+|nuORF	ENST00000593854.5_1_19:7709481-7711320:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.2372131347656	2	413.239461	824.46437	0.18653	7.708E-05	-2.9844	-0.0012333	-2.7978	-0.0011562	413.2380543501921	75.996	3.7473	75.751	74.958	78.705	-0.24455					141	93	3	0	0	0	1.0239	1	9439	9439		33.516	3.0119	1	885270			59091	17398	41457	41520	64422	64422					0.04511595120197853
PPAFSGRIL	9	Unmodified	_PPAFSGRIL_					0	0	0		MAPRE3|p.A179Pfs*34|1|0.17|ENSG00000084764|chr2:27025647-27025647|G/-|frameshift_variant	MAPRE3|p.A179Pfs*34|1|0.17|ENSG00000084764|chr2:27025647-27025647|G/-|frameshift_variant	MAPRE3|p.A179Pfs*34|1|0.17|ENSG00000084764|chr2:27025647-27025647|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2777099609375	2	479.279452	956.544351	-0.56358	-0.00027011	-3.3047	-0.0015839	-3.8683	-0.001854	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.85329	1	10306	10306		35.618	2.8059	1	4947400			59092	17951	41458	41521	64423	64423					0.0643408151404401
PPAFWNNAF	9	Unmodified	_PPAFWNNAF_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2924194335938	2	532.253434	1062.49232	-0.60078	-0.00031977	-2.7431	-0.00146	-3.3439	-0.0017798	532.2516315748314	30.067	1.0569	29.823	29.525	30.582	-0.24415					48	24	3	0	0	0	0.024357	1	1883	1883		35.201	6.9464	1	462470			59093	9388	41459	41522	64424	64424					-0.03643081899735989
PPAGKERKRSI	11	Unmodified	_PPAGKERKRSI_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.868896484375	2	619.870028	1237.7255	-0.9051	-0.00056104	-0.23927	-0.00014832	-1.1444	-0.00070936	619.869711333175	92.412	2.3777	92.412	91.051	93.429	0					189	56	4	0	0	0	0.96309	1	11765	11765		45.022	3.5956	1	1314500			59094	1101	41460	41523	64425	64425					0.11614974819940471
PPAGRKFP	8	Unmodified	_PPAGRKFP_					0	0	0		ENST00000291232.4_2_22:42318247-42318586:-|nuORF	ENST00000291232.4_2_22:42318247-42318586:-|nuORF	ENST00000291232.4_2_22:42318247-42318586:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25152587890625	2	435.253237	868.491922	-1.5352	-0.00066818	-3.2012	-0.0013933	-4.7363	-0.0020615	435.2517614216058	92.184	2.8053	92.041	90.979	93.784	-0.14356					107	65	3	0	0	0	1.0574	1	11303	11303		21.702	2.3424	1	1777900			59095	11792	41461	41524	64426	64426					0.0524154317108696
PPAGRPSTV	9	Unmodified	_PPAGRPSTV_					0	0	0			REV__ENST00000334176.3_1_19:33166647-33167097:+|nuORF	REV__ENST00000334176.3_1_19:33166647-33167097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.2459716796875	2	441.245609	880.476666	-0.53278	-0.00023509	0.85729	0.00037827	0.32451	0.00014319	441.2458766348845	21.652	0.95432	21.652	21.244	22.198	0					39	19	3	0	0	0	0.27161	1	689	689		79.451	17.344	1	791130	+		59096	30512	41462	41525	64427	64427					0.031646315832290384
PPAGVRRV	8	Unmodified	_PPAGVRRV_					0	0	0			REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2348937988281	2	426.264136	850.51372	-0.51105	-0.00021784	-3.1254	-0.0013322	-3.6364	-0.0015501	426.26270195969454	27.926	0.50778	27.922	27.692	28.199	-0.0042					24	12	3	0	0	0	0.027866	1	1551	1551		15.636	1.8609	1	300900	+		59097	22975	41463	41526	64428	64428					0.08248347919663956
PPAIPKTT	8	Unmodified	_PPAIPKTT_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.7460632324219	2	412.747453	823.480354	-0.24401	-0.00010072	-2.7496	-0.0011349	-2.9936	-0.0012356	412.7462093954923	84.44	1.6819	84.368	83.7	85.382	-0.072769					103	39	4	0	0	0	1.0574	1	10564	10564		21.702	2.3424	1	6858600			59098	970	41464	41527	64429	64429					0.06155301357091503
PPAIWLAWI	9	Unmodified	_PPAIWLAWI_					0	0	0		ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	ENST00000570099.5_1_16:30103671-30103908:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2709350585938	2	533.807845	1065.60114	0.707	0.0003774	-0.44891	-0.00023963	0.25809	0.00013777	533.8076088343847	59.478	0.72477	59.278	58.853	59.577	-0.20016					40	19	3	0	0	0	0.024475	1	6809	6809		39.021	17.319	1	1519000			59099	17020	41465	41528	64430	64430					0.07096129070555435
PPAKKRRGL	9	Unmodified	_PPAKKRRGL_					0	0	0			REV__GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	REV__GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.8344421386719	2	511.832717	1021.65088	0.24113	0.00012342	2.1024	0.0010761	2.3436	0.0011995	511.83366912510616	101.37	0.38962	101.24	101.03	101.42	-0.12576					16	8	2	0	0	0	0.96855	1	12595	12595		26.796	5.0938	1	91671	+		59100	22681	41466	41529	64431	64431					0.14092256799222014
PPALGPTSVS	10	Unmodified	_PPALGPTSVS_					0	0	0			REV__ENST00000537871.1_1_11:63304340-63312137:+|nuORF	REV__ENST00000537871.1_1_11:63304340-63312137:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.2528381347656	2	463.2531	924.491647	0.19344	8.9614E-05	-0.053109	-2.4603E-05	0.14034	6.5011E-05	463.25302345387075	110.16	0.38667	110.15	109.99	110.38	-0.009491					28	16	2	0	0	0	1.1217	1	13926	13926		21.96	1.013	1	243490	+		59101	34705	41467	41530	64432	64432					0.02638078660561405
PPALNQPILI	10	Unmodified	_PPALNQPILI_					0	0	0		nc|ENSG00000106536|P78424-2|POU6F2;nc|ENSG00000106536|P78424|POU6F2;ENSG00000106536|ENST00000518318|POU6F2;ENST00000517348.1_1_7:39125465-39413102:+|nuORF	nc|ENSG00000106536|P78424-2|POU6F2	nc|ENSG00000106536|P78424-2|POU6F2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3275756835938	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	1.0665	1	12734	12734		37.159	2.9866	1	22353000			59102	2794	41468	41531	64433	64433					0.10939479408125408
PPALSHSV	8	Unmodified	_PPALSHSV_					0	0	0		nc|ENSG00000117335|P15529-16|CD46;nc|ENSG00000117335|P15529-13|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-16|CD46	nc|ENSG00000117335|P15529-16|CD46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9229431152344	2	404.221603	806.428653	0.54113	0.00021873	1.0932	0.00044189	1.6343	0.00066063	404.22167298621724	26.784	0.50811	26.616	26.301	26.809	-0.16816					18	11	2	0	0	0	0.027866	1	1383	1383		21.702	7.0382	1	84538			59103	18200	41469	41532	64434	64434					0.01769557663192245
PPALVTLT	8	Unmodified	_PPALVTLT_					0	0	0			REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.87890625	2	406.249829	810.485105	0.6079	0.00024696	-3.3391	-0.0013565	-2.7312	-0.0011095	406.2481961826503	19.661	0.6833	19.5	19.233	19.916	-0.16079					29	13	4	0	0	0	0.027866	1	503	503		24.203	0	1	209350	+		59104	26018	41470	41533	64435	64435					0.07228185499855044
PPAPLLNF	8	Unmodified	_PPAPLLNF_					0	0	0		GATAD2B|p.H378N|1|0.14|ENSG00000143614|chr1:153816357-153816357|G/T|missense_variant	GATAD2B|p.H378N|1|0.14|ENSG00000143614|chr1:153816357-153816357|G/T|missense_variant	GATAD2B|p.H378N|1|0.14|ENSG00000143614|chr1:153816357-153816357|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.7434997558594	2	434.749996	867.485439	-0.49685	-0.00021601	-3.965	-0.0017238	-4.4618	-0.0019398	434.74813057290413	33.348	0.4929	33.355	33.117	33.61	0.0066261					18	13	2	0	0	0	0.027866	1	2393	2393		49.211	12.182	1	161180			59105	17671	41471	41534	64436	64436					0.046396052197110293
PPAPLLNF	8	Unmodified	_PPAPLLNF_					0	0	0		GATAD2B|p.H378N|1|0.14|ENSG00000143614|chr1:153816357-153816357|G/T|missense_variant	GATAD2B|p.H378N|1|0.14|ENSG00000143614|chr1:153816357-153816357|G/T|missense_variant	GATAD2B|p.H378N|1|0.14|ENSG00000143614|chr1:153816357-153816357|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.7439880371094	2	434.749996	867.485439	0.90427	0.00039313	-3.4834	-0.0015144	-2.5791	-0.0011213	434.7475415193615	33.271	0.54258	33.328	32.995	33.538	0.056572					26	14	3	0	0	0	0.027866	1	2348	2348		21.702	0	1	178130			59106	17671	41471	41534	64437	64437					0.046396052197110293
PPAPPIQTAAL	11	Unmodified	_PPAPPIQTAAL_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-4|TMEM209	REV__nc|ENSG00000146842|Q96SK2-4|TMEM209	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3093872070312	2	538.310949	1074.60735	0.35009	0.00018845	-3.4192	-0.0018406	-3.0691	-0.0016521	538.309175227564	18.726	0.99057	18.569	18.197	19.188	-0.15637					54	19	6	0	0	0	0.99553	1	352	352		37.812	1.3648	1	1675200	+		59107	24515	41472	41535	64438	64438					0.0730260251141317
PPAPPPPGLAH	11	Unmodified	_PPAPPPPGLAH_					0	0	0		FMN1|p.P953H|1|0.32|ENSG00000248905|chr15:32968843-32968843|G/T|missense_variant	FMN1|p.P953H|1|0.32|ENSG00000248905|chr15:32968843-32968843|G/T|missense_variant	FMN1|p.P953H|1|0.32|ENSG00000248905|chr15:32968843-32968843|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7898559570312	2	525.790184	1049.56581	-0.27448	-0.00014432	-0.32462	-0.00017068	-0.5991	-0.000315	525.7898459419479	17.045	0.55249	16.837	16.662	17.214	-0.20777					23	10	4	0	0	0	1.0533	1	118	118		24.203	0	1	382080			59108	17654	41473	41536	64439	64439					0.043014665427335785
PPAPRQKL	8	Unmodified	_PPAPRQKL_					0	0	0		ENST00000258341.4_1_1:183105646-183106870:+|nuORF	ENST00000258341.4_1_1:183105646-183106870:+|nuORF	ENST00000258341.4_1_1:183105646-183106870:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.7267761230469	2	453.779619	905.544686	-0.22629	-0.00010268	0.54785	0.0002486	0.32156	0.00014592	453.77973420154746	23.377	0.5762	23.453	23.114	23.69	0.076241					24	13	2	0	0	0	0.027866	1	896	896		50.025	11.218	1	110210			59109	11417	41474	41537	64440	64440					0.08813501233896659
PPAPRQKL	8	Unmodified	_PPAPRQKL_					0	0	0		ENST00000258341.4_1_1:183105646-183106870:+|nuORF	ENST00000258341.4_1_1:183105646-183106870:+|nuORF	ENST00000258341.4_1_1:183105646-183106870:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	453.779619	905.544686	0.010012	4.5434E-06	0.41562	0.0001886	0.42563	0.00019314	453.779710777424	23.482	0.79684	23.482	22.94	23.737	0	0.047081	-0.00021304	NaN	50.025	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83989			59110	11417	41474	41537							0.08813501233896659
PPAPRQKL	8	Unmodified	_PPAPRQKL_					0	0	0		ENST00000258341.4_1_1:183105646-183106870:+|nuORF	ENST00000258341.4_1_1:183105646-183106870:+|nuORF	ENST00000258341.4_1_1:183105646-183106870:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	453.779619	905.544686	-0.40071	-0.00018183	0.896	0.00040659	0.49529	0.00022475	453.7798732389689	23.431	0.70403	23.37	22.981	23.685	-0.06086	-0.065393	0.00022294	NaN	50.025	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110450			59111	11417	41474	41537							0.08813501233896659
PPAPVRNRHR	10	Unmodified	_PPAPVRNRHR_					0	0	0			REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.886474609375	3	400.567129	1198.67956	0.36192	0.00014497	3.769	0.0015098	4.131	0.0016547	400.56808550043627	54.722	0.41323	54.576	54.424	54.837	-0.14609					16	10	2	0	0	0	0.03519	1	5844	5844		27.047	6.2102	1	149980	+		59112	32133	41475	41538	64441	64441					0.08816374428351992
PPARLQIY	8	Unmodified	_PPARLQIY_					0	0	0			REV__ENST00000515337.1_2_5:158758770-158758959:+|nuORF	REV__ENST00000515337.1_2_5:158758770-158758959:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2802734375	2	479.279452	956.544351	-0.050895	-2.4393E-05	-3.2747	-0.0015695	-3.3256	-0.0015939	479.2776228774827	96.341	2.321	96.184	95.4	97.721	-0.15646					118	52	5	0	0	0	0.96719	1	11850	11850		42.474	6.8562	1	1642300	+		59113	34194	41476	41539	64442	64442					0.06434081514032641
PPASHFSL	8	Unmodified	_PPASHFSL_					0	0	0		nc|ENSG00000132376|Q9BT40-2|INPP5K;ENST00000350761.9_1_17:1399119-1419845:-|nuORF;ENSG00000132376|ENST00000421807|INPP5K;ENST00000495339.1_1_17:1401211-1401379:-|nuORF;ENST00000461552.1_1_17:1399875-1401379:-|nuORF	nc|ENSG00000132376|Q9BT40-2|INPP5K	nc|ENSG00000132376|Q9BT40-2|INPP5K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2621765136719	2	428.221603	854.428653	0.6047	0.00025895	-0.16627	-7.1201E-05	0.43843	0.00018775	428.2221564985159	90.232	0.36067	90.094	89.877	90.237	-0.13825					17	8	3	0	0	0	0.027866	1	11016	11016		25.45	0	1	234450			59114	4598	41477	41540	64443	64443					-0.004384423368151147
PPASPPHT	8	Unmodified	_PPASPPHT_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.20562744140625	2	402.205953	802.397353	0.85638	0.00034444	-1.7043	-0.00068547	-0.8479	-0.00034103	402.2052083095665	95.436	1.7876	95.439	94.87	96.657	0.0033722					115	41	4	0	0	0	1.0133	1	12135	12135		35.201	0	1	7412800			59115	1544;18081	41478	41541	64444	64444					-0.01175015370915844
PPASPPPSVL	10	Unmodified	_PPASPPPSVL_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-3|KMT2E;nc|ENSG00000005483|Q8IZD2-4|KMT2E;ENST00000468607.1_1_7:104702713-104704028:+|nuORF;KMT2E|p.D129Lfs*3|1|0.35|ENSG00000005483|chr7:105063542-105063555|ACATGATGATGGAT/-|frameshift_variant	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.80120849609375	2	481.271293	960.528032	-0.23459	-0.0001129	0.12979	6.2466E-05	-0.1048	-5.0437E-05	481.27133736110164	94.789	0.56506	94.794	94.575	95.14	0.0041122					24	12	3	0	0	0	0.03519	1	11959	11959		20.947	0	1	97425			59116	771	41479	41542	64445	64445					0.04618955557270965
PPASTPPELA	10	Unmodified	_PPASTPPELA_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.25836181640625	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	1.0781	1	13485	13485		35.618	0.41757	1	7056700	+		59117	22961	41480	41543	64446	64446					0.01210061314975519
PPAVVRLQT	9	Unmodified	_PPAVVRLQT_					0	0	0			REV__ENST00000591313.5_1_17:59471037-59476771:-|nuORF	REV__ENST00000591313.5_1_17:59471037-59476771:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.79803466796875	2	490.798009	979.581465	1.0073	0.00049439	-1.1434	-0.00056116	-0.13604	-6.677E-05	490.79728487650436	19.725	0.64475	19.525	19.156	19.801	-0.2001					30	12	4	0	0	0	0.72875	1	454	454		44.117	6.9577	1	350130	+		59118	35701	41481	41544	64447	64447					0.09085753059787294
PPAYATLTV	9	Unmodified	_PPAYATLTV_					0	0	0		nc|ENSG00000136110|O75829-2|CNMD;ENSG00000136110|ENST00000377962|CNMD	nc|ENSG00000136110|O75829-2|CNMD	nc|ENSG00000136110|O75829-2|CNMD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.75872802734375	2	466.758018	931.501483	-0.54693	-0.00025529	0.72521	0.0003385	0.17828	8.3214E-05	466.75821146551226	81.03	1.1629	81.03	80.707	81.869	0					61	28	4	0	0	0	0.64155	1	10116	10116		50.025	0	1	1217100			59119	4984	41482	41545	64448	64448					0.03299266665953837
PPCCLLRHQGR	11	Unmodified	_PPCCLLRHQGR_					0	0	0		ENST00000547105.1_1_12:62629005-62629191:-|nuORF	ENST00000547105.1_1_12:62629005-62629191:-|nuORF	ENST00000547105.1_1_12:62629005-62629191:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2645263671875	3	427.221865	1278.64376	0.51829	0.00022142	3.1716	0.001355	3.6899	0.0015764	427.223715422702	53.94	0.37976	54.038	53.808	54.188	0.098015					15	10	2	0	0	0	0.024735	1	5806	5806		19.263	4.569	1	77691			59120	16522	41483	41546	64449	64449					0.015588328647936578
PPCPVQWP	8	Unmodified	_PPCPVQWP_					0	0	0			REV__ENST00000360507.9_1_2:220037016-220037259:-|nuORF	REV__ENST00000360507.9_1_2:220037016-220037259:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.2791748046875	2	462.225831	922.437109	-0.35922	-0.00016604	3.3378	0.0015428	2.9786	0.0013768	462.22730899947976	47.413	0.49166	47.472	47.247	47.739	0.059097					26	14	2	0	0	0	0.027866	1	4699	4699		20.482	0	1	815590	+		59121	30910	41484	41547	64450	64450					-0.027212116918462925
PPCTPSNPGDA	11	Unmodified	_PPCTPSNPGDA_					0	0	0			REV__ENST00000470387.5_1_9:35616935-35617112:-|nuORF	REV__ENST00000470387.5_1_9:35616935-35617112:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2395629882812	2	528.226756	1054.43896	-0.98285	-0.00051917	-2.9603	-0.0015637	-3.9432	-0.0020829	528.2254075991216	63.214	0.21053	63.214	63.09	63.301	0					8	5	2	0	0	0	0.024732	1	7373	7373		32.812	26.077	1	230630	+		59122	33155	41485	41548	64451	64451					-0.08608247464553642
PPCVLQTPL	9	Unmodified	_PPCVLQTPL_					0	0	0		ENSG00000179627|ENST00000342537|ZBTB42	ENSG00000179627|ENST00000342537|ZBTB42	ENSG00000179627|ENST00000342537|ZBTB42	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2701416015625	2	484.267696	966.520839	-0.70225	-0.00034008	4.4773	0.0021682	3.775	0.0018281	484.26971229749256	31.364	0.86922	31.364	30.92	31.789	0					71	20	5	0	0	0	0.33245	1	2087	2087		71.296	0	1	3368400			59123	8912	41486	41549	64452	64452					0.036238996851921
PPCVLQTPL	9	Unmodified	_PPCVLQTPL_					0	0	0		ENSG00000179627|ENST00000342537|ZBTB42	ENSG00000179627|ENST00000342537|ZBTB42	ENSG00000179627|ENST00000342537|ZBTB42	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.27008056640625	2	484.267696	966.520839	-0.56038	-0.00027137	4.2289	0.0020479	3.6685	0.0017766	484.2696104545332	31.034	0.74202	31.103	30.744	31.486	0.068962					57	17	4	0	0	0	0.40179	1	1991	1991		65.803	4.8312	1	2863200			59124	8912	41486	41549	64453	64453					0.036238996851921
PPDHVSLRV	9	Unmodified	_PPDHVSLRV_					0	0	0		ENST00000557245.1_1_14:23371007-23371061:-|nuORF	ENST00000557245.1_1_14:23371007-23371061:-|nuORF	ENST00000557245.1_1_14:23371007-23371061:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.285400390625	2	510.285266	1018.55598	0.058477	2.984E-05	-0.21659	-0.00011052	-0.15811	-8.0682E-05	510.28478869053083	57.2	1.0065	57.036	56.387	57.393	-0.16432					97	27	6	0	0	0	0.27161	1	6395	6395		79.451	5.4763	1	5646500			59125	16728	41487	41550	64454	64454					0.047442785373846164
PPDPQFVL	8	Unmodified	_PPDPQFVL_					0	0	0		nc|ENSG00000185838|Q9BYB4-2|GNB1L;ENSG00000185838|ENST00000329517|GNB1L	nc|ENSG00000185838|Q9BYB4-2|GNB1L	nc|ENSG00000185838|Q9BYB4-2|GNB1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2576904296875	2	456.744911	911.475269	-0.50127	-0.00022895	-3.6773	-0.0016796	-4.1785	-0.0019085	456.74306583998384	33.309	0.87332	33.316	32.928	33.801	0.0066261					54	23	3	0	0	0	0.027866	1	2387	2387		29.15	0	1	1363600			59126	9481	41488	41551	64455	64455					0.01598997494465948
PPDPYVSL	8	Unmodified	_PPDPYVSL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2666931152344	2	444.229094	886.443634	-0.39291	-0.00017454	1.452	0.00064502	1.0591	0.00047048	444.2292751514928	29.262	0.39789	29.34	29.091	29.489	0.078344					18	9	3	0	0	0	0.027866	1	1747	1747		20.482	5.8177	1	144570			59127	5353	41489	41552	64456	64456					-0.004129952594666975
PPDRAVGEHID	11	Unmodified	_PPDRAVGEHID_					0	0	0		ENST00000469596.5_1_2:220071990-220073295:+|nuORF;nc|ENSG00000158552|Q8WV99-2|ZFAND2B;ENST00000464902.5_1_2:220071990-220073377:+|nuORF;ENSG00000158552|ENST00000289528|ZFAND2B;ENST00000475533.1_1_2:220071990-220074025:+|nuORF	ENST00000469596.5_1_2:220071990-220073295:+|nuORF	ENST00000469596.5_1_2:220071990-220073295:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.30029296875	2	603.299101	1204.58365	-0.43409	-0.00026189	3.17	0.0019124	2.7359	0.0016506	603.3008755816461	32.618	0.92422	32.461	32.121	33.046	-0.15772					49	22	4	0	0	0	0.99648	1	2255	2255		42.864	3.6114	1	2210000			59128	6683	41490	41553	64457	64457					-0.010458629930553798
PPDYPIHPPR	10	Unmodified	_PPDYPIHPPR_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	594.8119506835938	2	594.811648	1187.60874	-0.77555	-0.00046131	0.14	8.3274E-05	-0.63555	-0.00037803	594.8115630504158	19.013	0.88543	18.895	18.658	19.543	-0.11872					43	17	3	0	0	0	1.0781	1	346	346		35.618	2.8678	1	201480			59129	6728	41491	41554	64458	64458					0.022442366001541814
PPECVLGPE	9	Unmodified	_PPECVLGPE_					0	0	0			REV__ENSG00000112273|ENST00000510882|HDGFL1	REV__ENSG00000112273|ENST00000510882|HDGFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.26177978515625	2	470.725861	939.437169	-0.021777	-1.0251E-05	3.887	0.0018297	3.8652	0.0018194	470.72809566580275	26.126	0.41581	26.126	25.867	26.283	0					12	9	2	0	0	0	0.024436	1	1296	1296		23.042	0	1	40246	+		59130	21985	41492	41555	64459	64459					-0.034972564824897745
PPECYLDTET	10	Unmodified	_PPECYLDTET_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	583.2484741210938	2	584.247354	1166.48016	-2.0515	-0.0011986	-4.0399	-0.0023603	-6.0914	-0.0035589	584.7477139061172	80.245	0.45918	80.094	79.884	80.343	-0.15168					15	10	2	0	0	0	0.03519	1	9922	9922		35.618	13.658	1	75452	+		59131	33406	41493	41556	64460	64460					-0.09642531215740746
PPEISHGVV	9	Unmodified	_PPEISHGVV_					0	0	0		ENST00000466229.5_1_1:196648727-196709933:+|nuORF;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.7538146972656	2	467.753267	933.491981	0.71409	0.00033402	-2.0669	-0.00096681	-1.3528	-0.0006328	467.75224136305377	110.51	0.46631	110.52	110.37	110.84	0.0069504					19	11	2	0	0	0	0.88411	1	13919	13919		33.516	17.042	1	27413			59132	716	41494	41557	64461	64461					0.022574983804247495
PPEISHGVV	9	Unmodified	_PPEISHGVV_					0	0	0		ENST00000466229.5_1_1:196648727-196709933:+|nuORF;nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	467.753267	933.491981	0.35244	0.00016485	-1.855	-0.00086769	-1.5026	-0.00070284	467.75259572952586	110.48	0.3031	110.47	110.26	110.56	-0.009491	-0.018735	0.00033095	NaN	33.516	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46532			59133	716	41494	41557							0.022574983804247495
PPEPAEPTSV	10	Unmodified	_PPEPAEPTSV_					0	0	0			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2534790039062	2	512.253297	1022.49204	-0.12497	-6.4016E-05	-0.58698	-0.00030068	-0.71195	-0.0003647	512.2534183095719	54.435	2.7129	54.19	53.687	56.4	-0.2453					249	77	6	0	0	0	0.91678	2	5787	5787;5799		52.937	4.3314	1	54943000	+		59134	28596	41495	41558	64462;64463	64462					-0.01830546410246825
PPEPAEPTSV	10	Unmodified	_PPEPAEPTSV_					0	0	0			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2537841796875	2	512.253297	1022.49204	0.46489	0.00023814	-0.70196	-0.00035958	-0.23707	-0.00012144	512.2531200526979	54.406	2.7522	54.2	53.731	56.483	-0.20613					212	75	5	0	0	0	0.96965	1	5781	5781		49.442	6.5773	1	42815000	+		59135	28596	41495	41558	64464	64464					-0.01830546410246825
PPEPEVSPK	9	Unmodified	_PPEPEVSPK_					0	0	0			REV__ENST00000311275.11_1_20:45839183-45839306:-|nuORF	REV__ENST00000311275.11_1_20:45839183-45839306:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.259765625	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.98697	1	13349	13349		23.042	1.3402	1	7056700	+		59136	30205	41496	41559	64465	64465					0.012100613149982564
PPEWILGSVFV	11	Unmodified	_PPEWILGSVFV_					0	0	0		ENST00000481474.5_1_6:28872060-28872213:-|nuORF	ENST00000481474.5_1_6:28872060-28872213:-|nuORF	ENST00000481474.5_1_6:28872060-28872213:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.336669921875	2	622.339707	1242.66486	-2.2816	-0.00142	-2.7382	-0.0017041	-5.0198	-0.003124	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	1.0483	1	13537	13537		25.574	5.5773	1	1465400			59137	15229	41497	41560	64466	64466					0.05323444716987069
PPFGHLPDGL	10	Unmodified	_PPFGHLPDGL_					0	0	0			REV__ENST00000488350.6_1_3:49726607-49726919:-|nuORF	REV__ENST00000488350.6_1_3:49726607-49726919:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2883911132812	2	525.274367	1048.53418	-1.4676	-0.0007709	0.84273	0.00044266	-0.62489	-0.00032824	525.2750718322404	28.576	0.25052	28.331	28.241	28.491	-0.24524					8	5	2	0	0	0	0.03519	1	1692	1692		38.806	8.3025	1	23611	+		59138	33641	41498	41561	64467	64467					0.01185473788791569
PPFHPGIM	8	Unmodified	_PPFHPGIM_					0	0	0		LDB1|p.T36I|1|0.23|ENSG00000198728|chr10:102111455-102111455|G/A|missense_variant	LDB1|p.T36I|1|0.23|ENSG00000198728|chr10:102111455-102111455|G/A|missense_variant	LDB1|p.T36I|1|0.23|ENSG00000198728|chr10:102111455-102111455|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.7615966796875	2	448.228374	894.442194	0.39681	0.00017786	3.984	0.0017857	4.3808	0.0019636	448.2295152077478	33	0.33739	33.056	32.838	33.176	0.056568					13	8	2	0	0	0	0.027866	1	2267	2267		16.705	2.9296	1	62729			59139	17912	41499	41562	64468	64468					-0.009249078292214108
PPFHSVLV	8	Unmodified	_PPFHSVLV_					0	0	0			REV__ENST00000344423.9_1_8:28204642-28205029:-|nuORF	REV__ENST00000344423.9_1_8:28204642-28205029:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2079772949219	2	448.255446	894.496338	-0.35785	-0.00016041	1.052	0.00047155	0.69412	0.00031114	448.25551049796087	22.052	0.38479	21.85	21.663	22.048	-0.20198					11	7	2	0	0	0	0.027866	1	701	701		39.021	22.317	1	37270	+		59140	30682	41500	41563	64469	64469					0.04487007593991166
PPFHSVLV	8	Unmodified	_PPFHSVLV_					0	0	0			REV__ENST00000344423.9_1_8:28204642-28205029:-|nuORF	REV__ENST00000344423.9_1_8:28204642-28205029:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	448.255446	894.496338	-0.43449	-0.00019476	0.95325	0.0004273	0.51876	0.00023254	448.2556929436039	22.14	0.33091	21.955	21.764	22.094	-0.18539	0.05228	-4.7606E-05	NaN	39.021	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24810	+		59141	30682	41500	41563							0.04487007593991166
PPFIPWLL	8	Unmodified	_PPFIPWLL_					0	0	0		nc|ENSG00000100926|O15321-2|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7823791503906	2	491.791664	981.568775	-0.04516	-2.2209E-05	-2.0675	-0.0010168	-2.1126	-0.001039	491.79068801406993	78.371	0.83067	78.371	78.162	78.993	0					24	19	2	0	0	0	0.027866	1	9674	9674		43.626	10.133	1	159420			59142	18129	41501	41564	64470	64470					0.07725341667571684
PPFIQQTWS	9	Unmodified	_PPFIQQTWS_					0	0	0			REV__AluJb_dup56968|chr8:98045693-98046014:+|1.2447364525238482|0.0002169198745066|12.49|522.0|18|1|anti-sense	REV__AluJb_dup56968|chr8:98045693-98046014:+|1.2447364525238482|0.0002169198745066|12.49|522.0|18|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7984619140625	2	552.279649	1102.54475	3.1054	0.0017151	-1.5562	-0.00085944	1.5492	0.00085561	552.2786391637164	18.014	0.53859	18.014	17.647	18.186	0					16	10	2	0	0	0	0.024466	1	254	254		33.516	5.6333	1	82375	+		59143	19112	41502	41565	64471	64471					-0.0024254355676021078
PPFKTRTIA	9	Unmodified	_PPFKTRTIA_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7952270507812	2	515.805834	1029.59712	0.047827	2.467E-05	-1.4585	-0.00075232	-1.4107	-0.00072765	515.8044689758452	23.914	0.35514	23.699	23.467	23.822	-0.2151					17	7	3	0	0	0	0.024412	1	1012	1012		40.573	6.4001	1	118350	+		59144	24336	41503	41566	64472	64472					0.083500395768624
PPFLLALVVC	10	Unmodified	_PPFLLALVVC_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2;IL1RAPL2|p.E84Kfs*11|1|0.53|ENSG00000189108|chrX:105195641-105195641|G/-|frameshift_variant	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.31689453125	2	536.317189	1070.61982	-0.089886	-4.8207E-05	4.226	0.0022665	4.1361	0.0022182	536.3169550001763	20.916	0.77435	20.741	20.437	21.211	-0.17486					42	15	4	0	0	0	1.0812	1	619	619		35.201	9.6267	1	665100			59145	9789	41504	41567	64473	64473					0.08733922650117165
PPFLQAPSD	9	Unmodified	_PPFLQAPSD_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2616271972656	2	486.245275	970.475997	-0.90489	-0.00044	-2.6253	-0.0012766	-3.5302	-0.0017166	486.244092893113	36.069	0.55775	36.107	35.816	36.374	0.038044					45	15	4	0	0	0	0.024412	1	2802	2802		24.203	0	1	801280			59146	18235	41505	41568	64474	64474					-0.010422078564829462
PPFLQRRG	8	Unmodified	_PPFLQRRG_					0	0	0		ENST00000310924.6_1_17:77925300-77926551:-|nuORF	ENST00000310924.6_1_17:77925300-77926551:-|nuORF	ENST00000310924.6_1_17:77925300-77926551:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2621765136719	2	485.782693	969.550834	-0.26881	-0.00013058	-0.31947	-0.0001552	-0.58829	-0.00028578	485.78233673762304	24.235	0.76923	24.313	23.824	24.594	0.078344					27	16	2	0	0	0	0.027866	1	985	985		37.028	6.5248	1	79468			59147	12072	41506	41569	64475	64475					0.06484019465415258
PPFQVETAKL	10	Unmodified	_PPFQVETAKL_					0	0	0			REV__ENST00000530992.1_1_17:32364642-32365872:-|nuORF;REV__nc|ENSG00000146872|Q86UE8|TLK2	REV__nc|ENSG00000146872|Q86UE8|TLK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.3158569335938	2	565.316232	1128.61791	-0.15064	-8.5161E-05	0.1448	8.1859E-05	-0.0058409	-3.3019E-06	565.3162646410173	95	1.208	95.004	94.564	95.772	0.0033722					76	27	4	0	0	0	0.62431	1	12043	12043		74.255	0	1	2159100	+		59148	36760;34550	41507	41570	64476	64476					0.0587458516586139
PPFYIVTEYM	10	Unmodified	_PPFYIVTEYM_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-8|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	630.2898559570312	2	630.304475	1258.5944	2.7953	0.0017619	3.6837	0.0023218	6.479	0.0040838	630.3066016574578	18.571	0.39927	18.328	18.124	18.524	-0.24256					12	7	2	0	0	0	0.03519	1	283	283		21.96	12.777	1	28882			59149	12	41508	41571	64477	64477					-0.024555966630032344
PPFYIVTEYM	10	Unmodified	_PPFYIVTEYM_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-8|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	630.304475	1258.5944	-0.40568	-0.0002557	6.1293	0.0038633	5.7236	0.0036076	630.3081814663705	18.491	0.29731	18.287	18.113	18.411	-0.20371	-0.020533	0.0019821	NaN	21.96	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19838			59150	12	41508	41571							-0.024555966630032344
PPGGDQRRP	9	Unmodified	_PPGGDQRRP_					0	0	0			REV__ENSG00000132623|ENST00000378392|ANKEF1	REV__ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.26129150390625	2	490.25704	978.499526	-0.12543	-6.1494E-05	1.9518	0.00095689	1.8264	0.00089539	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.78069	1	13504	13504		40.573	11.423	1	7056700	+		59151	23300	41509	41572	64478	64478					0.009416507007131258
PPGGGGGG	8	Unmodified	_PPGGGGGG_					0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;ENSG00000180182|ENST00000324817|MED14;ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000117713|O14497-2|ARID1A;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.G731Vfs*12|1|0.29|ENSG00000117713|chr1:26761410-26761411|-/GT|frameshift_variant;ARID1A|p.G922Afs*2|1|0.16|ENSG00000117713|chr1:26766249-26766249|G/-|frameshift_variant;ARID1A|p.V1271Efs*21|1|0.06|ENSG00000117713|chr1:26773433-26773434|-/AGGAAATG|frameshift_variant;ARID1A|p.G1298Efs*15|1|0.07|ENSG00000117713|chr1:26773605-26773633|GGAAACATGAGCACTGGGGCCCCACAGCC/-|frameshift_variant;ENSG00000169991|ENST00000455833|IFFO2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000180828|ENST00000321870|BHLHE22;nc|ENSG00000117713|O14497-2|ARID1A;REV__nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000169991|ENST00000455833|IFFO2	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2520141601562	1	555.252151	554.244875	-0.66017	-0.00036656	0.71608	0.0003976	0.05591	3.1044E-05	555.2523664847017	57.519	0.89659	57.285	56.805	57.702	-0.23363					62	23	4	0	0	0	1.0574	2	6268	6268;6280		5.0869	0	1	1487400			59152	9001;3657;5121;23753;8001	41510	41573	64479;64480	64479					-0.05007791047660248
PPGGPPPTPT	10	Unmodified	_PPGGPPPTPT_					0	0	0			REV__ENST00000526269.2_1_11:128561691-128562836:-|nuORF	REV__ENST00000526269.2_1_11:128561691-128562836:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2388610839844	2	459.239993	916.465432	1.363	0.00062595	-2.4281	-0.0011151	-1.0651	-0.00048912	459.2388106976969	110.5	0.71297	110.5	110.2	110.91	0					46	22	3	0	0	0	1.1237	1	14041	14041		23.042	1.3402	1	112900	+		59153	34439	41511	41574	64481	64481					0.003858094890802022
PPGLIVARLL	10	Unmodified	_PPGLIVARLL_					0	0	0			REV__ENSG00000162433|ENST00000327299|AK4	REV__ENSG00000162433|ENST00000327299|AK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.8268432617188	2	524.847502	1047.68045	-0.66381	-0.0003484	-1.3424	-0.00070453	-2.0062	-0.0010529	524.8470539700736	98.031	0.2081	98.031	97.94	98.148	0					9	4	3	0	0	0	0.03519	1	12512	12512		6.3127	3.1534	1	35987	+		59154	25440	41512	41575	64482	64482					0.15851776024715036
PPGLRPLC	8	Unmodified	_PPGLRPLC_					0	0	0		ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.74951171875	2	426.741648	851.468743	0.051548	2.1998E-05	0.58615	0.00025014	0.6377	0.00027213	426.7419107194861	25.691	0.45119	25.52	25.247	25.698	-0.17078					17	10	2	0	0	0	0.027866	1	1261	1261		21.702	1.2205	1	125870			59155	14488	41513	41576	64483	64483					0.03706781062101072
PPGLRPLC	8	Unmodified	_PPGLRPLC_					0	0	0		ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	426.741648	851.468743	-1.0356	-0.00044192	-6.5192	-0.002782	-7.5548	-0.0032239	426.7387771858907	25.466	0.44143	25.466	25.211	25.652	0	-0.058223	-0.0034889	NaN	21.702	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65581			59156	14488	41513	41576							0.03706781062101072
PPGLRPLC	8	Unmodified	_PPGLRPLC_					0	0	0		ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.741648	851.468743	0.51954	0.00022171	-7.2317	-0.0030861	-6.7121	-0.0028643	426.7381505821311	25.21	0.44871	25.29	25.05	25.499	0.08009	-0.23373	-0.004097	NaN	21.702	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53949			59157	14488	41513	41576							0.03706781062101072
PPGLRPLC	8	Unmodified	_PPGLRPLC_					0	0	0		ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	426.741648	851.468743	-0.32698	-0.00013954	-0.47684	-0.00020349	-0.80383	-0.00034303	426.74194604655304	25.936	0.54088	25.7	25.302	25.843	-0.23603	0.17569	0.0016682	NaN	21.702	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105820			59158	14488	41513	41576							0.03706781062101072
PPGLRPLC	8	Unmodified	_PPGLRPLC_					0	0	0		ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	ENST00000448892.1_1_3:194208427-194208595:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	426.741648	851.468743	-0.43582	-0.00018598	0.88591	0.00037806	0.45009	0.00019207	426.7420316862515	25.816	0.54288	25.644	25.282	25.825	-0.17151	0.12021	0.0028313	NaN	21.702	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158010			59159	14488	41513	41576							0.03706781062101072
PPGPAWVALC	10	Unmodified	_PPGPAWVALC_					0	0	0		nc|ENSG00000168389|Q8NA29-3|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	nc|ENSG00000168389|Q8NA29-3|MFSD2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7612609863281	2	505.760038	1009.50552	0.68316	0.00034551	0.06188	3.1297E-05	0.74504	0.00037681	505.7600834624134	106.73	0.59353	106.73	106.39	106.98	0					46	19	3	0	0	0	1.1309	1	13690	13690		26.796	1.222	1	386600			59160	18493	41514	41577	64484	64484					0.0011503288800440714
PPGPEGKLD	9	Unmodified	_PPGPEGKLD_					0	0	0			REV__ENSG00000171812|ENST00000397799|COL8A2	REV__ENSG00000171812|ENST00000397799|COL8A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.2375183105469	2	455.23745	908.460347	0.038356	1.7461E-05	-0.98909	-0.00045027	-0.95073	-0.00043281	455.23706671930125	102.8	0.63968	102.8	102.57	103.21	0					36	15	3	0	0	0	0.99726	1	13179	13179		20.947	3.582	1	1457300	+		59161	26606	41515	41578	64485	64485					0.002455056264693667
PPGPGGGG	8	Unmodified	_PPGPGGGG_					0	0	0		ENSG00000198914|ENST00000361360|POU3F3;HSF5|p.H211Pfs*19|1|0.3|ENSG00000176160|chr17:58480186-58480187|-/G|frameshift_variant;ENSG00000176160|ENST00000323777|HSF5	ENSG00000198914|ENST00000361360|POU3F3	ENSG00000198914|ENST00000361360|POU3F3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.7959594726562	1	595.283451	594.276175	-1.1036	-0.00065697	0.0023567	1.4029E-06	-1.1013	-0.00065557	595.2870420591796	61.19	0.23752	60.936	60.774	61.012	-0.25373					7	5	2	0	0	0	0.027866	1	6810	6810		5.0869	0	1	35631			59162	10247	41516	41579	64486	64486					-0.037192180135662056
PPGPLPHIW	9	Unmodified	_PPGPLPHIW_					0	0	0		ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2763977050781	2	507.281995	1012.54944	-0.18259	-9.2625E-05	0.91501	0.00046417	0.73242	0.00037154	507.2825300399431	78.191	0.64201	78.035	77.741	78.383	-0.15591					24	14	2	0	0	0	0.024541	1	9313	9313		21.702	0	1	206280			59163	14673	41517	41580	64487	64487					0.043663853766588545
PPGPLPHIW	9	Unmodified	_PPGPLPHIW_					0	0	0		ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.281995	1012.54944	0.47105	0.00023896	-5.8225	-0.0029537	-5.3515	-0.0027147	507.27899189042705	77.896	0.41177	77.685	77.461	77.873	-0.21087	-0.15002	-0.0015107	NaN	14.664	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96392			59164	14673	41517	41580							0.043663853766588545
PPGPLPHIW	9	Unmodified	_PPGPLPHIW_					0	0	0		ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	ENST00000461081.2_1_12:124816664-124819403:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.281995	1012.54944	-0.34561	-0.00017532	-4.8759	-0.0024735	-5.2215	-0.0026488	507.2795338891768	77.768	0.49872	77.784	77.449	77.948	0.015907	-0.050472	-0.00055025	NaN	14.664	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127170			59165	14673	41517	41580							0.043663853766588545
PPGPPGKNG	9	Unmodified	_PPGPPGKNG_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.7186584472656	2	410.719227	819.423902	0.76249	0.00031317	-1.8416	-0.00075639	-1.0791	-0.00044322	410.71839091260426	95.381	1.9576	95.381	94.702	96.659	0					107	45	4	0	0	0	0.97516	1	12152	12152		25.45	0	1	3807300			59166	2935	41518	41581	64488	64488					0.00696673520440072
PPGPPGKNG	9	Unmodified	_PPGPPGKNG_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.7186584472656	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	0.97516	1	12141	12141		25.45	5.4534	1	3611200			59167	2935	41518	41581	64489	64489					0.00696673520440072
PPGPPGKNG	9	Unmodified	_PPGPPGKNG_					0	0	0		ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	ENSG00000108821|ENST00000225964|COL1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.718994140625	2	410.719227	819.423902	0.96756	0.0003974	-1.8848	-0.00077414	-0.91727	-0.00037674	410.7183696284328	96.072	1.6868	95.949	95.421	97.108	-0.12305					87	38	4	0	0	0	0.88411	2	11885	11885;11897		33.516	1.5607	1	1564100			59168	2935	41518	41581	64490;64491	64490					0.00696673520440072
PPGPPGPAGG	10	Unmodified	_PPGPPGPAGG_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	402.20556640625	2	402.205953	802.397353	2.7814	0.0011187	-3.5378	-0.0014229	-0.7564	-0.00030423	402.20445599860625	95.454	1.4843	95.458	94.791	96.276	0.0041199					106	34	4	0	0	0	1.0111	2	12094	12070;12094		44.531	5.7249	1	7017700			59169	3147	41519	41582	64492;64493	64493					-0.011750153708931066
PPGPPGPAGG	10	Unmodified	_PPGPPGPAGG_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.205322265625	2	402.205953	802.397353	0.92344	0.00037141	-1.6792	-0.00067539	-0.75578	-0.00030398	402.2052180634848	96.013	2.0859	95.876	95.199	97.285	-0.1367					136	47	4	0	0	0	1.0812	1	11869	11869		35.201	1.6851	1	5342800			59170	3147	41519	41582	64494	64494					-0.011750153708931066
PPGPPGQILTI	11	Unmodified	_PPGPPGQILTI_					0	0	0			REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3167114257812	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.013	1	11313	11313		33.922	1.1092	1	11601000	+		59171	20080	41520	41583	64495	64495					0.08222889028479585
PPGPPGQILTI	11	Unmodified	_PPGPPGQILTI_					0	0	0			REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3164672851562	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.94988	1	11152	11152		47.96	0.30219	1	15621000	+		59172	20080	41520	41583	64496	64496					0.08222889028479585
PPGPPGQILTI	11	Unmodified	_PPGPPGQILTI_					0	0	0			REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3169555664062	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.87596	2	11177	11165;11177		53.089	16.642	1	17400000	+		59173	20080	41520	41583	64497;64498	64498					0.08222889028479585
PPGPPGQILTI	11	Unmodified	_PPGPPGQILTI_					0	0	0			REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3167724609375	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.96309	1	11163	11163		45.022	7.2107	1	17068000	+		59174	20080	41520	41583	64499	64499					0.08222889028479585
PPGPQGPGP	9	Unmodified	_PPGPQGPGP_					0	0	0		ENST00000330794.8_1_5:138860469-138860801:-|nuORF	ENST00000330794.8_1_5:138860469-138860801:-|nuORF	ENST00000330794.8_1_5:138860469-138860801:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.2051696777344	2	402.205953	802.397353	0.85638	0.00034444	-1.7043	-0.00068547	-0.8479	-0.00034103	402.2052083095665	95.436	1.7876	95.439	94.87	96.657	0.0033722					115	41	4	0	0	0	0.88411	1	12174	12174		33.516	1.5607	1	7412800			59175	12332	41521	41584	64500	64500					-0.011750153708931066
PPGPQGPGP	9	Unmodified	_PPGPQGPGP_					0	0	0		ENST00000330794.8_1_5:138860469-138860801:-|nuORF	ENST00000330794.8_1_5:138860469-138860801:-|nuORF	ENST00000330794.8_1_5:138860469-138860801:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	402.2052307128906	2	402.205953	802.397353	2.7814	0.0011187	-3.5378	-0.0014229	-0.7564	-0.00030423	402.20445599860625	95.454	1.4843	95.458	94.791	96.276	0.0041199					106	34	4	0	0	0	0.64155	1	12036	12036		50.025	12.865	1	7017700			59176	12332	41521	41584	64501	64501					-0.011750153708931066
PPGQPGQPG	9	Unmodified	_PPGQPGQPG_					0	0	0			REV__ENSG00000136709|ENST00000322313|WDR33	REV__ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.7087097167969	2	417.70886	833.403166	0.61519	0.00025697	-1.1267	-0.00047065	-0.51155	-0.00021368	417.7081773554599	98.884	1.0121	98.747	98.277	99.289	-0.13625					37	24	2	0	0	0	0.90698	1	12243	12243		31.955	2.8053	1	237310	+		59177	23673	41522	41585	64502	64502					-0.020199168592284877
PPGQVTRIS	9	Unmodified	_PPGQVTRIS_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7607421875	2	477.771991	953.529429	-0.44161	-0.00021099	0.48646	0.00023242	0.04485	2.1428E-05	477.7721230751891	34.006	1.0353	34.056	33.765	34.8	0.050255					44	25	4	0	0	0	0.024205	1	2435	2435		35.618	0	1	355730	+		59178	27995	41523	41586	64503	64503					0.05080589646047429
PPGRPAPAAS	10	Unmodified	_PPGRPAPAAS_					0	0	0		ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.7509765625	2	460.751059	919.487565	-0.3452	-0.00015905	-0.43905	-0.00020229	-0.78425	-0.00036134	460.75073422531705	20.881	0.5247	20.777	20.57	21.095	-0.10418					23	10	3	0	0	0	1.0393	1	587	587		40.778	3.6191	1	163030			59179	10693	41524	41587	64504	64504					0.024600339575158614
PPGRPAPAAS	10	Unmodified	_PPGRPAPAAS_					0	0	0		ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	460.751059	919.487565	-0.93411	-0.00043039	0.38108	0.00017558	-0.55303	-0.00025481	460.75108992497496	20.728	0.67696	20.728	20.42	21.097	0	-0.024382	0.00034629	NaN	40.778	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149120			59180	10693	41524	41587							0.024600339575158614
PPGRPGPK	8	Unmodified	_PPGRPGPK_					0	0	0			REV__ENSG00000171812|ENST00000397799|COL8A2	REV__ENSG00000171812|ENST00000397799|COL8A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.23748779296875	2	403.237587	804.460622	-0.077957	-3.1435E-05	0.42225	0.00017027	0.34429	0.00013883	403.237626781048	29.823	1.2726	29.823	29.112	30.384	0					85	31	4	0	0	0	1.0017	1	1848	1848		37.028	0	1	3092100	+		59181	26606	41525	41588	64505	64505					0.05056970137002281
PPGRPQEM	8	Unmodified	_PPGRPQEM_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-3|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2585144042969	2	456.22382	910.433086	-0.046758	-2.1332E-05	1.7628	0.00080422	1.716	0.00078289	456.2246288061604	32.486	1.3075	32.486	31.71	33.018	0					55	33	3	0	0	0	0.027866	1	2285	2285		87.754	10.98	1	421590			59182	1432	41526	41589	64506	64506					-0.02571301185548691
PPGRRRSRRT	10	Unmodified	_PPGRRRSRRT_					0	0	0			REV__ENST00000311806.7_1_3:38207121-38207184:+|nuORF	REV__ENST00000311806.7_1_3:38207121-38207184:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.869140625	2	619.868686	1237.72282	-0.39229	-0.00024317	1.5366	0.00095248	1.1443	0.00070931	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.1265	1	11909	11909		24.519	1.9395	1	4658300	+		59183	30213	41527	41590	64507	64507					0.11346564205632603
PPGVGSGHL	9	Unmodified	_PPGVGSGHL_					0	0	0		ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000165821|ENST00000537235|SALL2	ENSG00000165821|ENST00000537235|SALL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.7188720703125	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	0.96855	1	12169	12169		26.796	6.3143	1	3611200			59184	7473	41528	41591	64508	64508					0.00696673520440072
PPGWCGGLL	9	Unmodified	_PPGWCGGLL_					0	0	0			REV__ENST00000309534.10_1_3:88107291-88108197:-|nuORF	REV__ENST00000309534.10_1_3:88107291-88108197:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.9163513183594	2	450.225831	898.437109	-0.20333	-9.1545E-05	-3.2479	-0.0014623	-3.4512	-0.0015538	450.2243295275737	23.929	4.3528	23.929	21.771	26.124	0					160	99	2	0	0	0	0.024289	1	1053	1053		39.021	14.517	1	821980	+		59185	30163	41529	41592	64509	64509					-0.016172116918369284
PPHCSLWAEGE	11	Unmodified	_PPHCSLWAEGE_					0	0	0			REV__ENSG00000175575|ENST00000310571|PAAF1	REV__ENSG00000175575|ENST00000310571|PAAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.18292236328125	3	409.181729	1224.52336	1.2683	0.00051898	0.68901	0.00028193	1.9574	0.00080091	409.18237826460523	25.013	1.4866	24.842	24.339	25.825	-0.17151					110	34	6	0	0	0	0.94699	1	1090	1090		48.602	3.9621	1	8321400	+		59186	26960	41530	41593	64510	64510					-0.07992296647785224
PPHHHPTI	8	Unmodified	_PPHHHPTI_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.24542236328125	2	468.245944	934.477334	0.40243	0.00018843	-2.9255	-0.0013698	-2.523	-0.0011814	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	1.0362	1	12935	12935		31.579	1.0753	1	4364500			59187	6684	41531	41594	64511	64511					0.007474710229530501
PPHIQTKTVVK	11	Unmodified	_PPHIQTKTVVK_					0	0	0		ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.3764038085938	2	624.377155	1246.73976	-0.20761	-0.00012963	4.3634	0.0027244	4.1558	0.0025948	624.3798605066477	100.67	0.51039	100.66	100.38	100.89	-0.0054398					22	12	2	0	0	0	1.0557	1	12800	12800		23.523	7.8809	1	490580			59188	5734	41532	41595	64512	64512					0.12625627248212368
PPHKHAQPAP	10	Unmodified	_PPHKHAQPAP_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2857055664062	2	540.290882	1078.56721	-0.84502	-0.00045656	1.1327	0.00061201	0.28772	0.00015545	540.2909937612313	40.237	0.29344	40.087	39.896	40.189	-0.1497					10	7	2	0	0	0	0.03519	1	3482	3482		31.955	8.9124	1	209440	+		59189	24166	41533	41596	64513	64513					0.03107100631495996
PPHLGARRTA	10	Unmodified	_PPHLGARRTA_					0	0	0		ENST00000354960.7_1_4:120549894-120550083:-|nuORF	ENST00000354960.7_1_4:120549894-120550083:-|nuORF	ENST00000354960.7_1_4:120549894-120550083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3095703125	2	538.309606	1074.60466	0.044493	2.3951E-05	-0.57228	-0.00030806	-0.52779	-0.00028411	538.3093653440621	18.788	0.74131	18.584	18.312	19.053	-0.20371					39	14	4	0	0	0	1.1246	1	327	327		23.523	0.48021	1	1610700			59190	12637	41534	41597	64514	64514					0.07034191897128039
PPHLVPKAL	9	Unmodified	_PPHLVPKAL_					0	0	0			REV__ENST00000428369.5_3_5:131563027-131563069:-|nuORF	REV__ENST00000428369.5_3_5:131563027-131563069:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.9281921386719	2	486.30547	970.596387	-0.028071	-1.3651E-05	-4.4711	-0.0021743	-4.4991	-0.0021879	486.3031320241522	45.438	0.33392	45.186	45.091	45.425	-0.25252					14	9	2	0	0	0	0.024412	1	4288	4288		31.955	5.1588	1	158960	+		59191	32319	41535	41598	64515	64515					0.10991244927777188
PPHNIIKS	8	Unmodified	_PPHNIIKS_					0	0	0			REV__ENST00000376511.6_1_6:30584481-30584577:-|nuORF	REV__ENST00000376511.6_1_6:30584481-30584577:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.22479248046875	2	453.263802	904.513051	-0.15971	-7.2389E-05	-0.056669	-2.5686E-05	-0.21638	-9.8075E-05	453.2634247584995	38.637	0.39065	38.413	38.248	38.638	-0.22366					15	9	2	0	0	0	0.027866	1	3173	3173		17.365	11.052	1	60514	+		59192	31357	41536	41599	64516	64516					0.056975084799546494
PPHWLPVS	8	Unmodified	_PPHWLPVS_					0	0	0			REV__ENST00000450525.6_1_17:38246401-38246590:+|nuORF	REV__ENST00000450525.6_1_17:38246401-38246590:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.80828857421875	2	466.75307	931.491587	-0.66853	-0.00031204	0.18363	8.5709E-05	-0.4849	-0.00022633	466.7529610977557	20.676	1.282	20.452	19.973	21.255	-0.22344					42	25	3	0	0	0	0.027866	1	631	631		14.664	6.9738	1	46484	+		59193	32703	41537	41600	64517	64517					0.0231012345121826
PPIEKDLMP	9	Unmodified	_PPIEKDLMP_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7960205078125	2	520.27826	1038.54197	-0.80531	-0.00041898	-1.6044	-0.00083472	-2.4097	-0.0012537	520.2765731001483	48.66	0.49016	48.727	48.452	48.943	0.066799					31	13	3	0	0	0	0.024541	1	4874	4874		18.324	0	1	189050	+		59194	27780	41538	41601	64518	64518					0.024238649940798496
PPIIGITT	8	Unmodified	_PPIIGITT_					0	0	0		ENSG00000078124|ENST00000532485|ACER3;nc|ENSG00000078124|Q9NUN7-2|ACER3	ENSG00000078124|ENST00000532485|ACER3	ENSG00000078124|ENST00000532485|ACER3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.2487487792969	2	406.249829	810.485105	1.6545	0.00067215	-4.4007	-0.0017878	-2.7461	-0.0011156	406.24794763509226	110.25	0.53743	110.26	110.09	110.62	0.0059204					36	14	3	0	0	0	1.0574	1	13886	13886		20.482	0	1	369610			59195	1629	41539	41602	64519	64519					0.07228185499832307
PPIIGITT	8	Unmodified	_PPIIGITT_					0	0	0		ENSG00000078124|ENST00000532485|ACER3;nc|ENSG00000078124|Q9NUN7-2|ACER3	ENSG00000078124|ENST00000532485|ACER3	ENSG00000078124|ENST00000532485|ACER3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2485046386719	2	406.249829	810.485105	0.38561	0.00015665	-3.5924	-0.0014594	-3.2068	-0.0013028	406.2482566602026	110.51	0.62167	110.39	110.14	110.76	-0.12525					30	19	2	0	0	0	1.0574	1	13578	13578		14.664	0	1	171040			59196	1629	41539	41602	64520	64520					0.07228185499832307
PPIIGITT	8	Unmodified	_PPIIGITT_					0	0	0		ENSG00000078124|ENST00000532485|ACER3;nc|ENSG00000078124|Q9NUN7-2|ACER3	ENSG00000078124|ENST00000532485|ACER3	ENSG00000078124|ENST00000532485|ACER3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2490539550781	2	406.249829	810.485105	0.91381	0.00037124	-4.0137	-0.0016306	-3.0999	-0.0012593	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0574	1	10695	10695		21.702	0	1	86727000			59197	1629	41539	41602	64521	64521					0.07228185499832307
PPILKQPTSTP	11	Unmodified	_PPILKQPTSTP_					0	0	0			REV__nc|ENSG00000127616|P51532-5|SMARCA4;REV__SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	REV__nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.2750244140625	2	589.842613	1177.67067	-0.38625	-0.00022783	3.7339	0.0022024	3.3476	0.0019746	589.8448575166925	89.998	0.83842	89.86	89.358	90.196	-0.13824					51	19	3	0	0	0	0.024765	1	10941	10941		58.23	30.348	1	937540	+		59198	22943;37515	41540	41603	64522	64522					0.08894543228666407
PPIPAPAAVL	10	Unmodified	_PPIPAPAAVL_					0	0	0			REV__ENSG00000113971|ENST00000337331|NPHP3	REV__ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.78302001953125	2	473.292028	944.569503	-0.10322	-4.8851E-05	-0.51379	-0.00024317	-0.61701	-0.00029203	473.2907799298877	17.606	0.24867	17.399	17.216	17.464	-0.20669					13	4	5	0	0	0	0.03519	1	186	186		19.36	0	1	20355	+		59199	22099	41541	41604	64523	64523					0.09500136316592034
PPKAALKEW	9	Unmodified	_PPKAALKEW_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;ENST00000599165.5_1_19:48654500-48673536:-|nuORF	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7767944335938	2	520.300384	1038.58622	-1.2788	-0.00066537	-2.9284	-0.0015236	-4.2072	-0.002189	520.2985861762992	28.266	0.49682	28.266	28.074	28.571	0					18	11	3	0	0	0	0.024457	1	1629	1629		37.159	0	1	119960			59200	2683	41542	41605	64524	64524					0.06846637202556849
PPKDHGGIF	9	Unmodified	_PPKDHGGIF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2535400390625	2	484.253434	966.492316	-0.22629	-0.00010958	0.11515	5.5763E-05	-0.11113	-5.3817E-05	484.2534186100866	52.372	1.3594	52.372	52.012	53.372	0					101	35	5	0	0	0	0.33184	1	5611	5611		71.378	0	1	9564000			59201	7039	41543	41606	64525	64525					0.007729181002900987
PPKDHGGIF	9	Unmodified	_PPKDHGGIF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	484.253434	966.492316	-0.59929	-0.00029021	0.44139	0.00021374	-0.1579	-7.6464E-05	484.25353908571805	52.208	1.3291	52.3	51.967	53.297	0.091938	-0.026136	0.00033833	NaN	71.378	88	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6796000			59202	7039	41543	41606							0.007729181002900987
PPKIAKGR	8	Unmodified	_PPKIAKGR_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENST00000494614.5_1_3:98520348-98531278:-|nuORF;ENST00000470393.1_1_3:98526911-98531458:-|nuORF	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.2366638183594	2	433.782162	865.549771	0.00077163	3.3472E-07	0.70529	0.00030594	0.70607	0.00030628	433.7810509587563	72.838	0.2156	72.561	72.454	72.669	-0.2769					5	4	2	0	0	0	0.027866	1	8531	8531		12.207	0	1	27553			59203	1201	41544	41607	64526	64526					0.11161805096514854
PPKKRGENK	9	Unmodified	_PPKKRGENK_					0	0	0			REV__nc|ENSG00000239605|Q8N801-2|STPG4	REV__nc|ENSG00000239605|Q8N801-2|STPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3124389648438	2	527.311815	1052.60908	1.2084	0.00063722	-1.4211	-0.00074937	-0.21268	-0.00011215	527.3109520512323	20.47	0.83702	20.539	20.217	21.054	0.068901					41	16	4	0	0	0	0.82115	1	517	517		37.812	2.1932	1	682740	+		59204	28951	41545	41608	64527	64527					0.08487656320039605
PPKKRLRA	8	Unmodified	_PPKKRLRA_					0	0	0		ENSG00000187954|ENST00000530374|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	ENSG00000187954|ENST00000530374|ZFTRAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2740783691406	2	483.321986	964.629418	-1.2851	-0.0006211	-3.3252	-0.0016072	-4.6103	-0.0022283	483.320736727504	30.033	0.25103	30.108	30.003	30.254	0.074314					6	5	2	0	0	0	0.027866	1	1865	1865		13.775	5.544	1	26053			59205	9676	41546	41609	64528	64528					0.1456887177050703
PPKPVSSI	8	Unmodified	_PPKPVSSI_					0	0	0			REV__ENSG00000127993|ENST00000265732|RBM48	REV__ENSG00000127993|ENST00000265732|RBM48	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.7462158203125	2	412.747453	823.480354	0.66518	0.00027455	-3.7783	-0.0015595	-3.1131	-0.0012849	412.74581110347407	84.535	2.0721	84.397	83.629	85.702	-0.13789					118	48	4	0	0	0	1.0574	1	10189	10189		26.796	0	1	4796400	+		59206	22959	41547	41610	64529	64529					0.06155301357091503
PPKRLSGLVVW	11	Unmodified	_PPKRLSGLVVW_					0	0	0			REV__ENST00000328914.4_1_7:4803200-4803701:+|nuORF	REV__ENST00000328914.4_1_7:4803200-4803701:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.9222412109375	3	417.923919	1250.74993	0.13055	5.4558E-05	-4.1704	-0.0017429	-4.0399	-0.0016884	417.9221244956388	104.43	1.2023	104.31	103.74	104.94	-0.12561					97	33	4	0	0	0	1.0898	1	13014	13014		8.7993	0	1	2252700	+		59207	30436	41548	41611	64530	64530					0.1345823497345009
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.746337890625	2	412.746111	823.477669	0.53661	0.00022148	-0.38125	-0.00015736	0.15536	6.4125E-05	412.7458595051266	84.56	2.4958	84.357	83.567	86.063	-0.20329					121	58	4	0	0	0	1.0574	2	10187	10187;10196		21.702	1.2205	1	8025800			59208	5582	41549	41612	64531;64532	64531					0.05886890742817741
PPKVDCEASI	10	Unmodified	_PPKVDCEASI_					0	0	0		ENST00000434241.1_3_2:219611877-219612841:+|nuORF	ENST00000434241.1_3_2:219611877-219612841:+|nuORF	ENST00000434241.1_3_2:219611877-219612841:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3165893554688	2	529.762975	1057.5114	-0.93193	-0.0004937	1.6585	0.00087863	0.7266	0.00038492	529.7632929469006	82.122	0.66602	82.122	81.869	82.535	0					23	15	2	0	0	0	0.03519	1	10212	10212		27.882	0	1	119260			59209	14240	41550	41613	64533	64533					-0.01505913390974456
PPKVPLMLA	9	Unmodified	_PPKVPLMLA_					0	0	0			REV__ENSG00000185198|ENST00000329267|PRSS57	REV__ENSG00000185198|ENST00000329267|PRSS57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.8330993652344	2	483.296256	964.57796	0.54695	0.00026434	-4.2042	-0.0020319	-3.6572	-0.0017675	483.29403377301736	103.16	0.65426	103.03	102.83	103.48	-0.12724					19	15	2	0	0	0	0.024443	1	12822	12822		26.796	19.106	1	72169	+		59210	27741	41551	41614	64534	64534					0.09425366961568216
PPKYPTDHY	9	Unmodified	_PPKYPTDHY_					0	0	0			REV__ENSG00000164976|ENST00000297625|MYORG	REV__ENSG00000164976|ENST00000297625|MYORG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.3342895507812	2	559.269281	1116.52401	0.60302	0.00033725	-2.3771	-0.0013294	-1.7741	-0.00099218	559.7701411843873	51.714	0.1865	51.53	51.374	51.561	-0.18405					5	4	2	0	0	0	0.024412	1	5319	5319		40.573	3.4135	1	76940	+		59211	25828	41552	41615	64535	64535					-0.029591339364287705
PPLAEPLAR	9	Unmodified	_PPLAEPLAR_					0	0	0			REV__ENSG00000110237|ENST00000263674|ARHGEF17	REV__ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.80560302734375	2	482.284734	962.554916	-0.62225	-0.0003001	0.95617	0.00046114	0.33391	0.00016104	482.28492008862975	53.222	0.76118	53.318	52.868	53.629	0.095669					29	20	2	0	0	0	0.024405	1	5700	5700		53.351	5.4358	1	445980	+		59212	21847	41553	41616	64536	64536					0.07214064168454115
PPLAMVLLLL	10	Unmodified	_PPLAMVLLLL_					0	0	0			REV__ENSG00000177202|ENST00000321762|SPACA4	REV__ENSG00000177202|ENST00000321762|SPACA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.792236328125	2	540.348489	1078.68242	0.20703	0.00011187	-2.3137	-0.0012502	-2.1067	-0.0011384	540.3475309012293	78.402	0.24124	78.21	78.016	78.257	-0.1921					7	5	2	0	0	0	0.03519	1	9669	9669		19.36	3.7182	1	44122	+		59213	27093	41554	41617	64537	64537					0.14623068718310606
PPLASVEVPD	10	Unmodified	_PPLASVEVPD_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2706298828125	2	512.27149	1022.52843	-0.064022	-3.2797E-05	-0.75707	-0.00038782	-0.82109	-0.00042062	512.2708564123549	104.09	1.5978	104.09	103.57	105.16	0.0031357					89	45	3	0	0	0	1.1307	1	13359	13359		26.693	0	1	332150			59214	5011	41555	41618	64538	64538					0.018063304864767815
PPLCKDVLS	9	Unmodified	_PPLCKDVLS_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.2664489746094	2	486.265153	970.515753	1.2062	0.00058654	3.5072	0.0017054	4.7134	0.002292	486.2670225456818	98.431	0.63458	98.307	97.911	98.546	-0.12413					23	14	2	0	0	0	0.85329	1	12198	12198		35.618	4.0885	1	134120			59215	4407	41556	41619	64539	64539					0.0293159582259932
PPLCWRSWALL	11	Unmodified	_PPLCWRSWALL_					0	0	0		ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.87725830078125	3	447.909392	1340.70635	-0.23549	-0.00010548	-2.4217	-0.0010847	-2.6572	-0.0011902	447.9083094076934	64.51	0.15749	64.275	64.216	64.374	-0.2345					5	3	2	0	0	0	0.024735	1	7333	7333		31.634	13.103	1	63203			59216	9746	41557	41620	64540	64540					0.04962302204694424
PPLCYTPPDS	10	Unmodified	_PPLCYTPPDS_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3162231445312	2	545.2497	1088.48485	-0.29778	-0.00016237	-1.6579	-0.00090398	-1.9557	-0.0010663	545.2487778675725	88.729	1.0213	88.745	88.236	89.257	0.015907					44	23	2	0	0	0	0.03519	1	11158	11158		53.351	25.469	1	370570	+		59217	21001	41558	41621	64541	64541					-0.055856022823036255
PPLCYTPPDS	10	Unmodified	_PPLCYTPPDS_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3170166015625	2	545.2497	1088.48485	-0.20718	-0.00011296	-1.3166	-0.00071788	-1.5238	-0.00083084	545.2491425278585	88.765	0.8385	88.633	88.277	89.115	-0.13136					28	19	2	0	0	0	0.03519	1	10815	10815		47.657	29.333	1	116030	+		59218	21001	41558	41621	64542	64542					-0.055856022823036255
PPLGEPHEGR	10	Unmodified	_PPLGEPHEGR_					0	0	0		ENST00000522759.1_1_8:21986032-21988020:-|nuORF	ENST00000522759.1_1_8:21986032-21988020:-|nuORF	ENST00000522759.1_1_8:21986032-21988020:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3164672851562	2	544.777805	1087.54106	-0.84599	-0.00046088	-1.3252	-0.00072196	-2.1712	-0.0011828	544.7769018782441	90.789	0.4185	90.773	90.529	90.948	-0.016716					16	9	2	0	0	0	0.03519	1	11435	11435		39.253	6.4404	1	170930			59219	16034	41559	41622	64543	64543					0.0007878666935994261
PPLHAPSPM	9	Oxidation (M)	_PPLHAPSPM(Oxidation (M))_		PPLHAPSPM(1)		PPLHAPSPM(41)	0	0	1			REV__ENST00000557552.1_1_14:105238371-105239528:-|nuORF	REV__ENST00000557552.1_1_14:105238371-105239528:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.7452392578125	2	481.741845	961.469137	3.7464	0.0018048	3.8486	0.001854	7.595	0.0036588	481.74351299489985	17.275	0.347	17.275	17.151	17.498	0					16	6	3	0	0	0	0.78069	1	155	155		40.573	7.0796	1	240560	+		59220	35073	41560	41623	64544	64544		950			-0.013138440086891023
PPLHAPSPM	9	Oxidation (M)	_PPLHAPSPM(Oxidation (M))_					0	0	1			REV__ENST00000557552.1_1_14:105238371-105239528:-|nuORF	REV__ENST00000557552.1_1_14:105238371-105239528:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	481.741845	961.469137	0.54491	0.00026251	7.0294	0.0033864	7.5743	0.0036489	481.74507900394894	17.406	0.3689	17.263	17.084	17.453	-0.14278	-0.0058685	0.0014917	NaN	40.573	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180610	+		59221	35073	41560	41623				950			-0.013138440086891023
PPLIKFIF	8	Unmodified	_PPLIKFIF_					0	0	0			REV__nc|ENSG00000152818|P46939-3|UTRN	REV__nc|ENSG00000152818|P46939-3|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2893981933594	2	487.807314	973.600075	-0.14628	-7.1357E-05	3.6355	0.0017734	3.4892	0.001702	487.80893535263044	101.98	0.50473	101.99	101.69	102.2	0.0073471					25	11	3	0	0	0	0.027866	1	12987	12987		14.664	0	1	220160	+		59222	36792	41561	41624	64545	64545					0.11221914701661717
PPLILPTA	8	Unmodified	_PPLILPTA_					0	0	0			REV__ENSG00000162722|ENST00000366481|TRIM58	REV__ENSG00000162722|ENST00000366481|TRIM58	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.2135314941406	2	411.260197	820.50584	-0.65615	-0.00026985	2.6357	0.001084	1.9796	0.00081412	411.26162518196384	44.546	1.0834	44.302	43.79	44.873	-0.2444					54	28	3	0	0	0	0.027866	1	4170	4170		21.702	1.2205	1	590050	+		59223	25480	41562	41625	64546	64546					0.08840775879502871
PPLKSCLSL	9	Unmodified	_PPLKSCLSL_					0	0	0			REV__ENST00000334512.9_1_10:81073638-81074007:+|nuORF	REV__ENST00000334512.9_1_10:81073638-81074007:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2772521972656	2	479.275521	956.536489	0.97614	0.00046784	3.0162	0.0014456	3.9924	0.0019134	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.91321	1	10215	10215		31.53	1.0262	1	7774800	+		59224	30519	41563	41626	64547	64547					0.05648186202256511
PPLLEAQLPSL	11	Unmodified	_PPLLEAQLPSL_					0	0	0			REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant;REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	REV__PTPRN|p.M408Cfs*33|1|0.79|ENSG00000054356|chr2:219300200-219300200|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3428955078125	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0429	1	11389	11389		27.047	2.5281	1	15816000	+		59225	37420;20188	41564	41627	64548	64548					0.09415427371436635
PPLLEDKNLE	10	Unmodified	_PPLLEDKNLE_					0	0	0		nc|ENSG00000177752|Q8N8F6-4|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2951049804688	2	584.316428	1166.6183	-0.57259	-0.00033457	1.1488	0.00067124	0.57617	0.00033667	584.3170762608218	56.353	0.54755	56.137	55.881	56.429	-0.21607					27	13	3	0	0	0	0.03519	1	6101	6101		62.107	1.1355	1	609830			59226	18546	41565	41628	64549	64549					0.04165960095065202
PPLLGATR	8	Unmodified	_PPLLGATR_					0	0	0			REV__ENST00000514917.2_1_7:102224772-102228197:-|nuORF	REV__ENST00000514917.2_1_7:102224772-102228197:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.7533874511719	2	412.75307	823.491587	0.55759	0.00023015	-0.00017208	-7.1026E-08	0.55742	0.00023008	412.752852261802	22.54	0.69641	22.338	22.097	22.793	-0.20198					25	14	3	0	0	0	0.81662	1	781	781		57.811	0	1	332050	+		59227	32858	41566	41629	64550	64550					0.07278123451226293
PPLLLPAT	8	Unmodified	_PPLLLPAT_					0	0	0		ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.2128601074219	2	411.260197	820.50584	-0.74969	-0.00030832	2.631	0.001082	1.8813	0.0007737	411.2616244879619	44.383	1.0065	44.278	43.817	44.823	-0.10468					49	26	3	0	0	0	0.027866	1	4141	4141		19.36	0	1	582220			59228	12454	41567	41630	64551	64551					0.0884077587951424
PPLLLPAT	8	Unmodified	_PPLLLPAT_					0	0	0		ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	411.260197	820.50584	-0.082609	-3.3974E-05	3.5897	0.0014763	3.5071	0.0014423	411.2614787075302	44.291	1.1337	44.291	43.836	44.97	0	-0.017406	6.8947E-05	NaN	19.36	77	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	696790			59229	12454	41567	41630							0.0884077587951424
PPLLLPAT	8	Unmodified	_PPLLLPAT_					0	0	0		ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	411.260197	820.50584	-0.6867	-0.00028241	4.1202	0.0016945	3.4335	0.001412	411.26175698186535	44.487	1.2712	44.342	43.848	45.119	-0.14471	0.033566	0.00050526	NaN	19.36	66	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	734130			59230	12454	41567	41630							0.0884077587951424
PPLLLPAT	8	Unmodified	_PPLLLPAT_					0	0	0		ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	ENST00000339176.7_1_16:67918814-67919670:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	411.260197	820.50584	0.29505	0.00012134	3.1642	0.0013013	3.4592	0.0014226	411.2613856202119	44.292	0.96407	44.329	43.923	44.887	0.0369	0.020792	-0.00028108	NaN	19.36	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804390			59231	12454	41567	41630							0.0884077587951424
PPLLPFFV	8	Unmodified	_PPLLPFFV_					0	0	0		ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2802734375	2	465.278389	928.542226	0.10623	4.9428E-05	3.569	0.0016606	3.6752	0.00171	465.2798872623321	87.824	1.1491	87.824	87.491	88.64	0					78	27	4	0	0	0	1.0241	1	11075	11075		33.493	2.9893	1	1815400			59232	12411	41568	41631	64552	64552					0.07509652776229814
PPLLPFFV	8	Unmodified	_PPLLPFFV_					0	0	0		ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2802429199219	2	465.278389	928.542226	1.4489	0.00067412	2.0638	0.00096024	3.5126	0.0016344	465.2792483869207	87.826	1.4105	87.845	87.515	88.925	0.018555					84	33	4	0	0	0	1.0241	1	10991	10991		33.493	0.68056	1	1753000			59233	12411	41568	41631	64553	64553					0.07509652776229814
PPLLPFFV	8	Unmodified	_PPLLPFFV_					0	0	0		ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2803649902344	2	465.278389	928.542226	-0.188	-8.7473E-05	3.9608	0.0018429	3.7728	0.0017554	465.2799934559697	88.073	1.1725	87.9	87.497	88.67	-0.17254					86	28	5	0	0	0	0.9599	1	10709	10709		43.626	13.122	1	1783100			59234	12411	41568	41631	64554	64554					0.07509652776229814
PPLLPFFV	8	Unmodified	_PPLLPFFV_					0	0	0		ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	ENST00000336702.7_1_11:118987385-118987784:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.28045654296875	2	465.278389	928.542226	-0.049393	-2.2982E-05	3.7728	0.0017554	3.7234	0.0017324	465.27991717882145	87.975	1.3184	87.838	87.459	88.777	-0.13744					91	31	5	0	0	0	1.0241	1	10701	10701		33.493	6.6969	1	1523900			59235	12411	41568	41631	64555	64555					0.07509652776229814
PPLMIKQE	8	Unmodified	_PPLMIKQE_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-3|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.2693176269531	2	478.267696	954.520839	0.33894	0.00016211	4.0006	0.0019133	4.3395	0.0020755	478.2696034191027	101.26	0.56543	101.14	100.85	101.42	-0.12576					28	12	3	0	0	0	1.0574	1	12571	12571		25.45	1.9275	1	407440			59236	793	41569	41632	64556	64556					0.041758996852195196
PPLNNHMIS	9	Unmodified	_PPLNNHMIS_					0	0	0		nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2	nc|ENSG00000179912|Q9Y2K5|R3HDM2	nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7899475097656	2	511.758027	1021.5015	-1.0761	-0.00055073	0.060267	3.0842E-05	-1.0159	-0.00051988	511.75796505237025	44.272	1.0638	44.028	43.412	44.476	-0.2444					37	28	2	0	0	0	0.024427	1	4009	4009		26.693	0	1	279230			59237	8935	41570	41633	64557	64557					-0.008390566056846183
PPLNRRLWKRE	11	Unmodified	_PPLNRRLWKRE_					0	0	0			REV__ENST00000514450.2_1_4:15471657-15513157:+|nuORF	REV__ENST00000514450.2_1_4:15471657-15513157:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265625	3	488.956393	1463.84735	-1.2646	-0.00061833	2.8118	0.0013749	1.5473	0.00075654	489.29274465591106	55.717	0.10812	55.56	55.499	55.607	-0.15656					4	2	2	0	0	0	0.024828	1	5992	5992		9.2118	0	1	70290	+		59238	34174	41571	41634	64558	64558					0.13398016902306153
PPLPAKGIISN	11	Unmodified	_PPLPAKGIISN_					0	0	0		ENST00000432329.6_1_2:208467595-208467667:+|nuORF	ENST00000432329.6_1_2:208467595-208467667:+|nuORF	ENST00000432329.6_1_2:208467595-208467667:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8297119140625	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0238	1	11248	11248		31.53	2.3598	1	4870500			59239	14202	41572	41635	64559	64559					0.10094577919835501
PPLPELLSQAL	11	Unmodified	_PPLPELLSQAL_					0	0	0			REV__ENST00000538010.5_1_12:122499282-122499603:+|nuORF	REV__ENST00000538010.5_1_12:122499282-122499603:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.34326171875	2	589.344989	1176.67542	-2.3876	-0.0014071	-1.1613	-0.0006844	-3.5489	-0.0020915	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0392	1	11590	11590		28.081	1.0342	1	4758600	+		59240	34708	41573	41636	64560	64560					0.09415427371459373
PPLPEPFLRR	10	Unmodified	_PPLPEPFLRR_					0	0	0			REV__ENSG00000187690|ENST00000342995|EZHIP	REV__ENSG00000187690|ENST00000342995|EZHIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.355224609375	2	611.358765	1220.70298	-0.79597	-0.00048662	-3.5905	-0.0021951	-4.3865	-0.0026817	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.1286	1	11539	11539		25.574	2.5316	1	4189200	+		59241	27958	41574	41637	64561	64561					0.10145375422303005
PPLPEPFLRR	10	Unmodified	_PPLPEPFLRR_					0	0	0			REV__ENSG00000187690|ENST00000342995|EZHIP	REV__ENSG00000187690|ENST00000342995|EZHIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3557739257812	2	611.358765	1220.70298	-0.45812	-0.00028007	-3.7749	-0.0023078	-4.2331	-0.0025879	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.118	1	11562	11562		30.318	1.1682	1	13365000	+		59242	27958	41574	41637	64562	64562					0.10145375422303005
PPLPKKILTR	10	Unmodified	_PPLPKKILTR_					0	0	0		ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.81396484375	2	581.887158	1161.75976	-0.094817	-5.5173E-05	3.6465	0.0021218	3.5517	0.0020667	581.8901553527446	20.172	0.2387	19.949	19.829	20.067	-0.22344					6	4	2	0	0	0	0.03519	1	474	474		23.042	2.0956	1	7067			59243	9706	41575	41638	64563	64563					0.18535422978834504
PPLPLLQQSP	10	Unmodified	_PPLPLLQQSP_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3164672851562	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	1.0002	1	10907	10907		45.972	3.5761	1	3635800			59244	11033	41576	41639	64564	64564					0.08222889028479585
PPLPLLQQSP	10	Unmodified	_PPLPLLQQSP_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3168334960938	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.0122	1	11080	11080		44.377	8.7589	1	15621000			59245	11033	41576	41639	64565	64565					0.08222889028479585
PPLPLPPML	9	Unmodified	_PPLPLPPML_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7904968261719	2	487.790807	973.56706	-0.4369	-0.00021311	0.010937	5.335E-06	-0.42596	-0.00020778	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.93795	1	10383	10383		29.842	3.1486	1	2003200			59246	1322	41577	41640	64566	64566					0.07921964587285402
PPLPLPPML	9	Unmodified	_PPLPLPPML_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7906188964844	2	487.790807	973.56706	0.29152	0.0001422	-0.7053	-0.00034404	-0.41379	-0.00020184	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.93795	1	10318	10318		29.842	1.5873	1	2091900			59247	1322	41577	41640	64567	64567					0.07921964587285402
PPLPLPPML	9	Unmodified	_PPLPLPPML_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7902526855469	2	487.790807	973.56706	0.33726	0.00016451	-0.79423	-0.00038742	-0.45697	-0.0002229	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.80342	1	10166	10166		39.021	0.21535	1	1999500			59248	1322	41577	41640	64568	64568					0.07921964587285402
PPLPQLPTLTT	11	Unmodified	_PPLPQLPTLTT_					0	0	0			REV__ENSG00000169856|ENST00000305901|ONECUT1	REV__ENSG00000169856|ENST00000305901|ONECUT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0075	1	11413	11413		35.152	2.3396	1	15816000	+		59249	26404	41578	41641	64569	64569					0.09415427371413898
PPLPSQVGLKA	11	Unmodified	_PPLPSQVGLKA_					0	0	0			REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8308715820312	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	0.96599	1	10702	10702		44.377	8.7589	1	1711900	+		59250	25680	41579	41642	64570	64570					0.10094577919812764
PPLPVPDSAS	10	Unmodified	_PPLPVPDSAS_					0	0	0			REV__nc|ENSG00000114423|Q13191-2|CBLB	REV__nc|ENSG00000114423|Q13191-2|CBLB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2582702636719	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.0781	1	13430	13430		35.618	0	1	6618800	+		59251	22121	41580	41643	64571	64571					0.012100613149982564
PPLQRVFQT	9	Unmodified	_PPLQRVFQT_					0	0	0		nc|ENSG00000064270|O75185-3|ATP2C2;ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;ENST00000567222.1_1_16:84493993-84497335:+|nuORF	nc|ENSG00000064270|O75185-3|ATP2C2	nc|ENSG00000064270|O75185-3|ATP2C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.306396484375	2	543.308741	1084.60293	-1.4162	-0.00076944	-2.2041	-0.0011975	-3.6203	-0.001967	543.3072806613377	36.34	0.57635	36.298	36.032	36.609	-0.042454					38	15	3	0	0	0	0.85329	1	2873	2873		35.618	0	1	3112900			59252	18062	41581	41644	64572	64572					0.06401138088517655
PPLRLSRHGT	10	Unmodified	_PPLRLSRHGT_					0	0	0			REV__ENST00000467502.6_1_19:46886456-46890886:+|nuORF	REV__ENST00000467502.6_1_19:46886456-46890886:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3294677734375	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.0992	1	11184	11184		32.812	3.6629	1	18337000	+		59253	33075	41582	41645	64573	64573					0.0855074758567298
PPLRRRLAL	9	Unmodified	_PPLRRRLAL_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5;REV__ENST00000553293.5_1_14:69522275-69583201:-|nuORF	REV__ENST00000553293.5_1_14:69522275-69583201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.8400268554688	2	546.361642	1090.70873	0.40052	0.00021883	-0.77988	-0.0004261	-0.37936	-0.00020727	546.8614562611209	99.627	0.22462	99.492	99.29	99.514	-0.13526					5	4	2	0	0	0	0.024535	1	12329	12329		25.45	0	1	18286	+		59254	23981;34970	41583	41646	64574	64574					0.16700518724655922
PPLSGPGGNL	10	Unmodified	_PPLSGPGGNL_					0	0	0			REV__ENSG00000166987|ENST00000355673|MBD6	REV__ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.74456787109375	2	454.745442	907.476331	0.63166	0.00028725	-1.4842	-0.00067495	-0.85257	-0.0003877	454.744633969462	97.413	1.6833	97.422	96.795	98.478	0.0089111					83	38	3	0	0	0	1.0781	1	12391	12391		35.618	0.41757	1	250170	+		59255	26094	41584	41647	64575	64575					0.018892118633857535
PPLSIPTT	8	Unmodified	_PPLSIPTT_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.23699951171875	2	413.239461	824.46437	0.37034	0.00015304	-3.0938	-0.0012785	-2.7235	-0.0011255	413.238039410457	75.721	1.9256	75.721	74.914	76.84	0					94	49	3	0	0	0	1.0338	1	9446	9446		31.955	5.1588	1	845760			59256	2865;13673	41585	41648	64576	64576					0.04511595120175116
PPLSIPTT	8	Unmodified	_PPLSIPTT_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.2375793457031	2	413.239461	824.46437	0.43789	0.00018095	-3.0092	-0.0012435	-2.5713	-0.0010626	413.2381098357524	89.719	1.6173	89.719	89.102	90.719	0					72	38	4	0	0	0	1.0574	1	11344	11344		26.796	0	1	1834600			59257	2865;13673	41585	41648	64577	64577					0.04511595120175116
PPLSIPTT	8	Unmodified	_PPLSIPTT_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2376708984375	2	413.239461	824.46437	-0.82222	-0.00033977	-1.5829	-0.00065411	-2.4051	-0.00099388	413.23867503470103	89.937	1.1672	89.775	89.343	90.51	-0.1626					65	27	4	0	0	0	1.0574	1	10997	10997		26.796	3.7536	1	1502100			59258	2865;13673	41585	41648	64578	64578					0.04511595120175116
PPLSIPTT	8	Unmodified	_PPLSIPTT_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2373962402344	2	413.239461	824.46437	0.064624	2.6705E-05	-3.0455	-0.0012585	-2.9808	-0.0012318	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	1.0133	2	9132	9075;9132		35.201	1.5607	1	908900			59259	2865;13673	41585	41648	64579;64580	64580					0.04511595120175116
PPLSLPPPN	9	Unmodified	_PPLSLPPPN_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.7776184082031	2	466.26601	930.517468	0.48774	0.00022742	-0.62457	-0.00029122	-0.13683	-6.38E-05	466.2654272800987	81.848	1.2711	81.619	80.98	82.251	-0.2289					48	29	3	0	0	0	0.024323	1	9801	9801		44.117	8.9161	1	226050	+		59260	23105	41586	41649	64581	64581					0.04942972902847487
PPLTHGLAVL	10	Unmodified	_PPLTHGLAVL_					0	0	0			REV__nc|ENSG00000130751|Q99742-2|NPAS1	REV__nc|ENSG00000130751|Q99742-2|NPAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3057556152344	2	509.30821	1016.60187	-0.44141	-0.00022481	-3.7161	-0.0018927	-4.1575	-0.0021175	509.30622347701615	91.862	1.4922	91.853	91.451	92.944	-0.0082932					106	35	5	0	0	0	1.0541	1	11602	11602		38.806	8.3025	1	3607500	+		59261	23149	41587	41650	64582	64582					0.09422923719614573
PPLTPGPSF	9	Unmodified	_PPLTPGPSF_					0	0	0			REV__ENSG00000156860|ENST00000356166|FBRS	REV__ENSG00000156860|ENST00000356166|FBRS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2581481933594	2	456.744911	911.475269	-0.23182	-0.00010588	-2.6287	-0.0012006	-2.8605	-0.0013065	456.74348998734825	31.991	0.43842	32.003	31.782	32.221	0.011797					15	10	2	0	0	0	0.024	1	2191	2191		65.803	0	1	177010	+		59262	25094	41588	41651	64583	64583					0.015989974944886853
PPLTRAGL	8	Unmodified	_PPLTRAGL_					0	0	0			REV__ENST00000505626.5_1_5:6586416-6586641:+|nuORF	REV__ENST00000505626.5_1_5:6586416-6586641:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	412.7532958984375	2	412.75307	823.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.525	1	22.34	21.84	22.84	-0.18539								0	0	0	0.57512	1	799	799		50.025	0	1		+		59263	34012	41589	41652	64584	64584					0.07278123451237661
PPLTSRVIPL	10	Unmodified	_PPLTSRVIPL_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8402099609375	2	546.842416	1091.67028	-0.54263	-0.00029673	-3.6256	-0.0019826	-4.1682	-0.0022794	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	1.0508	1	12670	12670		39.253	3.6345	1	11370000			59264	2807	41590	41653	64585	64585					0.12811168299458586
PPLVLFLL	8	Unmodified	_PPLVLFLL_					0	0	0		ENSG00000185933|ENST00000329905|CALHM1	ENSG00000185933|ENST00000329905|CALHM1	ENSG00000185933|ENST00000329905|CALHM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2732849121094	2	456.301865	910.589176	-0.46012	-0.00020995	3.2558	0.0014856	2.7957	0.0012757	456.3034699303584	27.62	0.33441	27.701	27.498	27.833	0.081293					11	8	2	0	0	0	0.027866	1	1458	1458		16.705	0	1	47277			59265	9492	41591	41654	64586	64586					0.13030512327384258
PPLVLLLLLLL	11	Unmodified	_PPLVLLLLLLL_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MSMS	OPSCC_39_ClassI_Rep-1	1	406.2954406738281	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.3	1	112.3	111.8	112.8	0								0	0	0	1.8302	1	14134	14134		0	0	1		+		59266	24158	41592	41655	64587	64587					0.25772392135172595
PPLVLLLLLLL	11	Unmodified	_PPLVLLLLLLL_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MSMS	OPSCC_39_ClassI_Rep-3	3	406.296142578125	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.61	1	111.62	111.12	112.12	0.0077286								0	0	0	1.8223	1	13987	13987		0.37141	0	1		+		59267	24158	41592	41655	64588	64588					0.25772392135172595
PPLVLLLLLLL	11	Unmodified	_PPLVLLLLLLL_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MSMS	OPSCC_39_ClassI_Rep-3	3	406.2946472167969	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.78	1	111.79	111.29	112.29	0.0077286								0	0	0	1.8223	1	13995	13995		0.37141	0	1		+		59268	24158	41592	41655	64589	64589					0.25772392135172595
PPLVLLLLLLL	11	Unmodified	_PPLVLLLLLLL_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MSMS	OPSCC_39_ClassI_Rep-3	3	406.29437255859375	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.09	111.59	112.59	0.0077286								0	0	0	1.6884	1	14009	14009		6.6596	3.0405	1		+		59269	24158	41592	41655	64590	64590					0.25772392135172595
PPLVLRET	8	Unmodified	_PPLVLRET_					0	0	0			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7504577636719	2	462.779285	923.544017	0.68503	0.00031702	-0.73988	-0.0003424	-0.05486	-2.5388E-05	462.7787588517699	42.673	0.89079	42.699	42.186	43.077	0.026012					57	24	3	0	0	0	0.027866	1	3846	3846		25.45	4.9683	1	1187800	+		59270	28596	41593	41656	64591	64591					0.0791866179419003
PPLVRQFT	8	Unmodified	_PPLVRQFT_					0	0	0		ENST00000427177.5_1_17:75496205-75496499:+|nuORF	ENST00000427177.5_1_17:75496205-75496499:+|nuORF	ENST00000427177.5_1_17:75496205-75496499:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2813720703125	2	479.279452	956.544351	0.83864	0.00040194	-4.2261	-0.0020255	-3.3875	-0.0016236	479.2772019259283	96.265	2.3127	96.128	95.156	97.468	-0.1367					130	52	5	0	0	0	1.0133	1	11848	11848		35.201	6.0512	1	1775700			59271	14104	41594	41657	64592	64592					0.0643408151404401
PPLWAASL	8	Unmodified	_PPLWAASL_					0	0	0		ENST00000441363.1_1_6:74009094-74009619:+|nuORF	ENST00000441363.1_1_6:74009094-74009619:+|nuORF	ENST00000441363.1_1_6:74009094-74009619:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2617492675781	2	427.742171	853.469789	-0.87387	-0.00037379	1.0818	0.00046274	0.20794	8.8947E-05	427.7425285516441	91.042	0.32454	90.891	90.769	91.094	-0.15175					10	7	2	0	0	0	0.027866	1	11135	11135		13.775	0	1	112820			59272	14359	41595	41658	64593	64593					0.03719318702644614
PPMKLRLTVDL	11	Unmodified	_PPMKLRLTVDL_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8820190429688	2	641.881216	1281.74788	0.34308	0.00022022	1.4955	0.00095995	1.8386	0.0011802	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.0292	1	11623	11623		30.318	6.115	1	1209200	+		59273	20291	41596	41659	64594	64594					0.1182743817332721
PPMKLRLTVDL	11	Unmodified	_PPMKLRLTVDL_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8839111328125	2	641.881216	1281.74788	0.76256	0.00048947	1.1025	0.00070767	1.8651	0.0011971	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0075	1	12043	12043		35.152	5.982	1	3421300	+		59274	20291	41596	41659	64595	64595					0.1182743817332721
PPMMPILAKLK	11	Unmodified	_PPMMPILAKLK_					0	0	0			REV__ENST00000300403.10_1_20:30345217-30345373:+|nuORF	REV__ENST00000300403.10_1_20:30345217-30345373:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8694458007812	2	619.871805	1237.72906	-0.66003	-0.00040914	-3.1767	-0.0019692	-3.8367	-0.0023783	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.018	1	11806	11806		32.812	7.2384	1	5229800	+		59275	30046	41597	41660	64596	64596					0.11970185277914425
PPNESTPDS	9	Unmodified	_PPNESTPDS_					0	0	0			REV__nc|ENSG00000154310|Q9UKE5-8|TNIK	REV__nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.28765869140625	2	472.203804	942.393055	-0.1165	-5.5011E-05	-0.99198	-0.00046842	-1.1085	-0.00052343	472.2013508524873	94.279	0.35519	94.285	94.051	94.406	0.0059891					11	8	2	0	0	0	0.024457	1	11890	11890		45.952	8.7928	1	48112	+		59276	24955	41598	41661	64597	64597					-0.0804456937513578
PPNGLRPRLN	10	Unmodified	_PPNGLRPRLN_					0	0	0			REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3289184570312	2	567.330539	1132.64652	-1.643	-0.00093215	0.013669	7.7548E-06	-1.6294	-0.00092439	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0508	2	11700	11540;11700		39.253	13.679	1	14057000	+		59277	30850	41599	41662	64598;64599	64599					0.0855074758567298
PPNGLRPRLN	10	Unmodified	_PPNGLRPRLN_					0	0	0			REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.32958984375	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.0393	3	11693	11380;11693;11797		40.778	9.2484	1	13648000	+		59278	30850	41599	41662	64600;64601;64602	64601					0.0855074758567298
PPNGLRPRLN	10	Unmodified	_PPNGLRPRLN_					0	0	0			REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3300170898438	2	567.330539	1132.64652	-0.43786	-0.00024841	-0.88397	-0.0005015	-1.3218	-0.00074991	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.089	1	11051	11051		34.173	1.3601	1	4134200	+		59279	30850	41599	41662	64603	64603					0.0855074758567298
PPNGLRPRLN	10	Unmodified	_PPNGLRPRLN_					0	0	0			REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3298950195312	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.0781	3	11768	11606;11642;11768		35.618	9.9698	1	14972000	+		59280	30850	41599	41662	64604;64605;64606	64606					0.0855074758567298
PPNGLRPRLN	10	Unmodified	_PPNGLRPRLN_					0	0	0			REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	REV__ENST00000358201.8_2_16:28936491-28936821:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.330539	1132.64652	-0.39327	-0.00022312	-1.1254	-0.00063845	-1.5186	-0.00086157	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.1286	1	11079	11079		25.574	0	1	19210000	+		59281	30850	41599	41662	64607	64607					0.0855074758567298
PPNLILTT	8	Unmodified	_PPNLILTT_					0	0	0		ENST00000375311.1_1_10:31138210-31139252:-|nuORF	ENST00000375311.1_1_10:31138210-31139252:-|nuORF	ENST00000375311.1_1_10:31138210-31139252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7591857910156	2	434.760561	867.506569	0.4777	0.00020768	-3.3449	-0.0014542	-2.8672	-0.0012466	434.75903003403516	86.907	1.794	86.77	86.268	88.062	-0.13734					101	42	4	0	0	0	1.0133	1	10538	10538		35.201	1.6851	1	4266100			59282	13155	41600	41663	64608	64608					0.06751570528570028
PPNRERPAS	9	Unmodified	_PPNRERPAS_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2706909179688	2	512.270147	1022.52574	-1.3044	-0.00066821	2.7625	0.0014152	1.4581	0.00074695	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	0.96906	1	13255	13255		26.693	0	1	5095800			59283	1103	41601	41664	64609	64609					0.015379198721802823
PPNVPERC	8	Unmodified	_PPNVPERC_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.25823974609375	2	456.22382	910.433086	-0.13422	-6.1233E-05	1.2233	0.00055812	1.0891	0.00049689	456.2243910034789	32.182	0.94122	32.245	31.561	32.502	0.062885					54	23	3	0	0	0	0.027866	1	2164	2164		87.754	5.4493	1	375490	+		59284	25017	41602	41665	64610	64610					-0.025713011855600598
PPPAKEATV	9	Unmodified	_PPPAKEATV_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.2537536621094	2	455.255643	908.496732	1.1117	0.00050609	-4.0697	-0.0018528	-2.9581	-0.0013467	455.2536804083514	19.732	0.64046	19.499	19.275	19.916	-0.23345					27	12	4	0	0	0	0.80658	1	436	436		38.806	8.3025	1	269250	+		59285	20686	41603	41666	64611	64611					0.038823825231816045
PPPAKEATV	9	Unmodified	_PPPAKEATV_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	455.255643	908.496732	0.35252	0.00016049	-3.629	-0.0016521	-3.2765	-0.0014917	455.2539238862113	19.662	0.44306	19.502	19.282	19.725	-0.1608	-0.024785	0.00027655	NaN	38.806	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172660	+		59286	20686	41603	41666							0.038823825231816045
PPPAKEATV	9	Unmodified	_PPPAKEATV_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	455.255643	908.496732	0.90249	0.00041086	-4.1004	-0.0018667	-3.1979	-0.0014559	455.25372600186057	19.779	0.49436	19.579	19.355	19.85	-0.2001	0.05242	-0.00015262	NaN	38.806	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231910	+		59287	20686	41603	41666							0.038823825231816045
PPPAKEATV	9	Unmodified	_PPPAKEATV_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	455.255643	908.496732	1.1117	0.00050609	-4.0697	-0.0018528	-2.9581	-0.0013467	455.2536804083514	19.732	0.64046	19.499	19.275	19.916	-0.23345	-0.027635	-0.00012471	NaN	38.806	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269250	+		59288	20686	41603	41666							0.038823825231816045
PPPALGRL	8	Unmodified	_PPPALGRL_					0	0	0		ENSG00000099625|ENST00000650044|CBARP	ENSG00000099625|ENST00000650044|CBARP	ENSG00000099625|ENST00000650044|CBARP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.7555236816406	2	410.755613	819.496673	-1.0051	-0.00041284	1.2129	0.00049819	0.20779	8.5351E-05	410.75597021768624	37.686	0.75007	37.468	37.144	37.894	-0.21848					50	19	4	0	0	0	1.0017	1	3022	3022		37.028	7.1869	1	3096700			59289	2079	41604	41667	64612	64612					0.07970427313830442
PPPALGRL	8	Unmodified	_PPPALGRL_					0	0	0		ENSG00000099625|ENST00000650044|CBARP	ENSG00000099625|ENST00000650044|CBARP	ENSG00000099625|ENST00000650044|CBARP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	410.755613	819.496673	-0.76869	-0.00031574	1.0315	0.00042371	0.26284	0.00010796	410.75590172472295	37.67	0.71549	37.451	37.152	37.868	-0.2195	-0.0055729	0.00016555	NaN	37.028	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2457600			59290	2079	41604	41667							0.07970427313830442
PPPALKPY	8	Unmodified	_PPPALKPY_					0	0	0			REV__ENST00000503410.1_1_17:48047044-48050176:+|nuORF	REV__ENST00000503410.1_1_17:48047044-48050176:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.4972229003906	2	441.757821	881.501089	-0.57753	-0.00025513	-2.6718	-0.0011803	-3.2493	-0.0014354	441.75659045405035	29.216	0.47517	29.043	28.85	29.325	-0.17258					15	10	2	0	0	0	0.027866	1	1782	1782		28.254	6.5519	1	49795	+		59291	33951	41605	41668	64613	64613					0.05559891736743339
PPPALLTL	8	Unmodified	_PPPALLTL_					0	0	0			REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.21221923828125	2	411.260197	820.50584	0.27608	0.00011354	3.0159	0.0012403	3.292	0.0013539	411.26135713025485	47.41	1.1097	47.14	46.561	47.671	-0.26939					49	30	2	0	0	0	0.027866	1	4558	4558		29.842	3.0454	1	241270	+		59292	30207	41606	41669	64614	64614					0.0884077587951424
PPPALLTL	8	Unmodified	_PPPALLTL_					0	0	0			REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.2124938964844	2	411.260197	820.50584	-0.16382	-6.7372E-05	3.4426	0.0014158	3.2787	0.0013484	411.26153582033396	47.05	1.1734	46.856	46.38	47.554	-0.19387					59	32	2	0	0	0	0.027866	1	4554	4554		23.037	1.3344	1	247760	+		59293	30207	41606	41669	64615	64615					0.0884077587951424
PPPALLTL	8	Unmodified	_PPPALLTL_					0	0	0			REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	411.260197	820.50584	0.74896	0.00030802	2.6415	0.0010864	3.3905	0.0013944	411.26127732786506	47.129	1.0391	47.129	46.772	47.811	0	-0.10652	-0.00018987	NaN	29.842	46	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224570	+		59294	30207	41606	41669							0.0884077587951424
PPPALLTL	8	Unmodified	_PPPALLTL_					0	0	0			REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	411.260197	820.50584	0.66849	0.00027492	2.6891	0.0011059	3.3576	0.0013809	411.2612023911891	47.472	1.122	47.319	46.736	47.858	-0.15301	0.083983	-0.0001507	NaN	29.842	54	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183540	+		59295	30207	41606	41669							0.0884077587951424
PPPALLTL	8	Unmodified	_PPPALLTL_					0	0	0			REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	REV__ENST00000311481.10_1_11:66044423-66044729:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	411.260197	820.50584	-0.077603	-3.1915E-05	3.3828	0.0013912	3.3052	0.0013593	411.2614920895313	47.294	0.92009	47.353	46.88	47.8	0.059097	0.11735	0.00041981	NaN	29.842	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214770	+		59296	30207	41606	41669							0.0884077587951424
PPPAPDIRPRP	11	Unmodified	_PPPAPDIRPRP_					0	0	0		ENST00000340630.9_1_22:37171882-37172035:-|nuORF	ENST00000340630.9_1_22:37171882-37172035:-|nuORF	ENST00000340630.9_1_22:37171882-37172035:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.8880920410156	3	404.899773	1211.67749	0.27986	0.00011331	-0.22744	-9.2091E-05	0.052417	2.1224E-05	405.2343466262948	22.808	0.50786	22.623	22.369	22.877	-0.18539					15	10	2	0	0	0	0.024735	1	816	816		25.126	0	1	16745			59297	12473	41607	41670	64616	64616					0.08011900899896318
PPPAPPLNQP	10	Unmodified	_PPPAPPLNQP_					0	0	0		ENST00000609672.5_3_X:64808305-64808455:+|nuORF	ENST00000609672.5_3_X:64808305-64808455:+|nuORF	ENST00000609672.5_3_X:64808305-64808455:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.26416015625	2	514.282192	1026.54983	-0.43434	-0.00022337	-1.6467	-0.00084685	-2.081	-0.0010702	514.2818694016897	67.226	0.62592	66.988	66.796	67.422	-0.23814					36	14	3	0	0	0	0.03519	1	7712	7712		38.806	4.6336	1	527550			59298	17608	41608	41671	64617	64617					0.037617603058379245
PPPDCFSLEI	10	Unmodified	_PPPDCFSLEI_					0	0	0		ENST00000264832.7_1_19:10381526-10381682:+|nuORF	ENST00000264832.7_1_19:10381526-10381682:+|nuORF	ENST00000264832.7_1_19:10381526-10381682:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.264892578125	2	559.26535	1116.51615	-0.47091	-0.00026336	0.41368	0.00023136	-0.057226	-3.2005E-05	559.265343842782	82.74	1.7562	82.766	81.332	83.088	0.026558					97	41	3	0	0	0	0.67706	1	10279	10279		68.787	2.3575	1	1518600			59299	11573	41609	41672	64618	64618					-0.03745029248239007
PPPFFLPV	8	Unmodified	_PPPFFLPV_					0	0	0			REV__ENST00000563518.5_1_15:41796702-41799561:-|nuORF	REV__ENST00000563518.5_1_15:41796702-41799561:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2645263671875	2	457.262739	912.510926	-0.036935	-1.6889E-05	3.5359	0.0016168	3.499	0.0016	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0574	1	10036	10036		24.504	0.30126	1	3048400	+		59300	35229	41610	41673	64619	64619					0.05117079742126407
PPPGCMLVLP	10	Unmodified	_PPPGCMLVLP_					0	0	0			REV__nc|ENSG00000100243|P00387-3|CYB5R3	REV__nc|ENSG00000100243|P00387-3|CYB5R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2706909179688	2	512.271924	1022.52929	-0.15004	-7.6862E-05	-1.3005	-0.0006662	-1.4505	-0.00074306	512.270910752159	104.19	1.4432	104.18	103.73	105.17	-0.0032196					89	40	3	0	0	0	1.1309	1	13320	13320		26.796	0	1	318570	+		59301	36516	41611	41674	64620	64620					0.018931303301542357
PPPGEMRLN	9	Unmodified	_PPPGEMRLN_					0	0	0			REV__ENST00000549770.1_1_14:33684397-34029452:+|nuORF	REV__ENST00000549770.1_1_14:33684397-34029452:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.760498046875	2	505.758027	1009.5015	-0.010776	-5.4499E-06	4.4375	0.0022443	4.4267	0.0022389	505.76053150486666	106.76	0.69756	106.76	106.33	107.03	-0.003479					38	22	2	0	0	0	0.80658	1	13658	13658		38.806	5.2906	1	269380	+		59302	24764	41612	41675	64621	64621					-0.0028705660570267355
PPPGGGGG	8	Unmodified	_PPPGGGGG_					0	0	0		ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	ENSG00000180828|ENST00000321870|BHLHE22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.8187255859375	1	595.283451	594.276175	0.21477	0.00012785	-4.2433	-0.002526	-4.0285	-0.0023981	595.2840118136467	99.56	0.25781	99.435	99.313	99.571	-0.12458					8	6	2	0	0	0	0.027866	1	12348	12348		5.0869	0	1	21817			59303	9001	41613	41676	64622	64622					-0.03719218013577574
PPPGGRGTN	9	Unmodified	_PPPGGRGTN_					0	0	0			REV__ENST00000581080.1_1_17:38497513-38497723:-|nuORF	REV__ENST00000581080.1_1_17:38497513-38497723:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.7197570800781	2	426.719759	851.424964	0.10469	4.4673E-05	0.27503	0.00011736	0.37972	0.00016203	426.7197452256144	21.792	0.95768	21.601	21.226	22.184	-0.19072					38	19	4	0	0	0	0.89441	1	712	712		32.812	0.85756	1	366250	+		59304	35525	41614	41677	64623	64623					-0.00669112110676906
PPPGPGAGPG	10	Unmodified	_PPPGPGAGPG_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	402.20562744140625	2	402.205953	802.397353	1.094	0.00044	-1.9387	-0.00077974	-0.84469	-0.00033974	402.20510936484203	95.336	1.7812	95.336	94.659	96.44	0					129	41	5	0	0	0	1.0812	1	12146	12146		35.201	0	1	7302700			59305	1051	41615	41678	64624	64624					-0.011750153709044753
PPPGPGAGPG	10	Unmodified	_PPPGPGAGPG_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.2053527832031	2	402.205953	802.397353	0.85638	0.00034444	-1.7043	-0.00068547	-0.8479	-0.00034103	402.2052083095665	95.436	1.7876	95.439	94.87	96.657	0.0033722					115	41	4	0	0	0	1.0812	1	12148	12148		35.201	0	1	7412800			59306	1051	41615	41678	64625	64625					-0.011750153709044753
PPPGPGAGPG	10	Unmodified	_PPPGPGAGPG_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	402.20556640625	2	402.205953	802.397353	2.7814	0.0011187	-3.5378	-0.0014229	-0.7564	-0.00030423	402.20445599860625	95.454	1.4843	95.458	94.791	96.276	0.0041199					106	34	4	0	0	0	1.0812	1	12046	12046		35.201	0	1	7017700			59307	1051	41615	41678	64626	64626					-0.011750153709044753
PPPHPKWGSIC	11	Unmodified	_PPPHPKWGSIC_					0	0	0		ENSG00000175329|ENST00000404699|ISX	ENSG00000175329|ENST00000404699|ISX	ENSG00000175329|ENST00000404699|ISX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.18310546875	3	406.874459	1217.60155	-0.22763	-9.2616E-05	2.8849	0.0011738	2.6573	0.0010812	406.8757249008637	27.707	0.85573	27.539	27.317	28.172	-0.16816					43	20	3	0	0	0	0.024766	1	1627	1627		24.232	16.89	1	632180			59308	8552	41616	41679	64627	64627					0.0014518072810005833
PPPHPKWGSIC	11	Unmodified	_PPPHPKWGSIC_					0	0	0		ENSG00000175329|ENST00000404699|ISX	ENSG00000175329|ENST00000404699|ISX	ENSG00000175329|ENST00000404699|ISX	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	406.874459	1217.60155	0.0891	3.6252E-05	2.7611	0.0011234	2.8502	0.0011597	406.87557373425363	27.793	0.78931	27.551	27.335	28.125	-0.24217	0.0097525	-0.00021655	NaN	24.232	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487960			59309	8552	41616	41679							0.0014518072810005833
PPPHPKWGSIC	11	Unmodified	_PPPHPKWGSIC_					0	0	0		ENSG00000175329|ENST00000404699|ISX	ENSG00000175329|ENST00000404699|ISX	ENSG00000175329|ENST00000404699|ISX	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	406.874459	1217.60155	-0.32807	-0.00013348	3.2572	0.0013253	2.9292	0.0011918	406.87578587636267	27.69	0.89207	27.534	27.266	28.158	-0.15664	-0.0074045	0.00038905	NaN	24.232	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573160			59310	8552	41616	41679							0.0014518072810005833
PPPHPLLPV	9	Unmodified	_PPPHPLLPV_					0	0	0		ENST00000378536.4_1_1:2240916-2241354:+|nuORF	ENST00000378536.4_1_1:2240916-2241354:+|nuORF	ENST00000378536.4_1_1:2240916-2241354:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7486267089844	2	483.792195	965.569838	0.079732	3.8574E-05	-3.8245	-0.0018503	-3.7447	-0.0018117	483.7904119930289	68.39	0.53024	68.409	68.042	68.573	0.018913					19	13	2	0	0	0	0.024475	1	8139	8139		21.702	7.0382	1	143130			59311	13240	41617	41680	64628	64628					0.08567556036462065
PPPKKAVDD	9	Unmodified	_PPPKKAVDD_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2469482421875	2	483.766374	965.518196	-0.92344	-0.00044673	0.46173	0.00022337	-0.46171	-0.00022336	483.7665080352116	40.448	0.32795	40.471	40.199	40.527	0.023003					12	8	2	0	0	0	0.024523	1	3457	3457		21.96	4.5949	1	179860	+		59312	23615	41618	41681	64629	64629					0.03405767551896588
PPPKKAVDD	9	Unmodified	_PPPKKAVDD_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.766374	965.518196	0.23497	0.00011367	0.086443	4.1818E-05	0.32141	0.00015549	483.76651617737775	40.297	0.32681	40.297	39.988	40.314	0	-0.086951	-0.00027069	NaN	87.754	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244380	+		59313	23615	41618	41681							0.03405767551896588
PPPKKSTKA	9	Unmodified	_PPPKKSTKA_					0	0	0			REV__ENST00000532383.5_1_11:10821544-10823273:-|nuORF	REV__ENST00000532383.5_1_11:10821544-10823273:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2845764160156	2	477.292559	952.570566	0.25827	0.00012327	0.040748	1.9449E-05	0.29902	0.00014272	477.29243147439746	55.949	0.55296	55.793	55.442	55.995	-0.15602					29	14	3	0	0	0	0.024523	1	6149	6149		21.96	0	1	618620	+		59314	19741	41619	41682	64630	64630					0.09238350685518526
PPPKPKRDP	9	Unmodified	_PPPKPKRDP_					0	0	0		ENSG00000144460|ENST00000272907|NYAP2;nc|ENSG00000144460|Q9P242|NYAP2;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16	ENSG00000144460|ENST00000272907|NYAP2;nc|ENSG00000041515|Q9Y6X6|MYO16	ENSG00000144460|ENST00000272907|NYAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2568359375	2	516.303458	1030.59236	0.89376	0.00046145	2.7637	0.0014269	3.6575	0.0018884	516.304817922877	25.186	0.38238	25.014	24.777	25.159	-0.17151					12	8	2	0	0	0	0.024405	1	1132	1132		14.865	2.658	1	108980			59315	5742;1071	41620	41683	64631	64631					0.07829155434069435
PPPLALLT	8	Unmodified	_PPPLALLT_					0	0	0			REV__ENST00000538936.6_2_17:79861992-79862238:-|nuORF	REV__ENST00000538936.6_2_17:79861992-79862238:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.5243835449219	2	411.260197	820.50584	-0.55659	-0.0002289	3.8904	0.0016	3.3338	0.0013711	411.26161245868315	55.015	1.1186	54.869	54.57	55.688	-0.14609					43	30	2	0	0	0	0.027866	1	5941	5941		21.702	0	1	170070	+		59316	34727	41621	41684	64632	64632					0.0884077587951424
PPPLALLT	8	Unmodified	_PPPLALLT_					0	0	0			REV__ENST00000538936.6_2_17:79861992-79862238:-|nuORF	REV__ENST00000538936.6_2_17:79861992-79862238:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.5245666503906	2	411.260197	820.50584	0.038374	1.5782E-05	2.7631	0.0011363	2.8014	0.0011521	411.2612158208099	55.215	1.1577	54.984	54.565	55.723	-0.23087					53	32	2	0	0	0	0.027866	1	5945	5945		14.664	0	1	211630	+		59317	34727	41621	41684	64633	64633					0.0884077587951424
PPPLALLT	8	Unmodified	_PPPLALLT_					0	0	0			REV__ENST00000538936.6_2_17:79861992-79862238:-|nuORF	REV__ENST00000538936.6_2_17:79861992-79862238:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.52398681640625	2	411.260197	820.50584	-0.19999	-8.2249E-05	3.3415	0.0013742	3.1415	0.001292	411.2614239782614	55.197	1.4397	54.99	54.648	56.088	-0.20613					67	39	2	0	0	0	0.027866	1	5935	5935		14.664	0	1	226250	+		59318	34727	41621	41684	64634	64634					0.0884077587951424
PPPLHKGET	9	Unmodified	_PPPLHKGET_					0	0	0			REV__ENST00000260442.3_1_15:52401903-52402017:-|nuORF	REV__ENST00000260442.3_1_15:52401903-52402017:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.28741455078125	2	488.266542	974.51853	-0.38778	-0.00018934	3.4899	0.001704	3.1021	0.0015147	488.26797105300466	28.956	1.112	28.787	28.048	29.16	-0.16897					37	25	3	0	0	0	0.024323	1	1757	1757		44.117	0	1	96956	+		59319	29600	41622	41685	64635	64635					0.030251872717599326
PPPLLRGA	8	Unmodified	_PPPLLRGA_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.755615234375	2	410.755613	819.496673	-0.76869	-0.00031574	1.0315	0.00042371	0.26284	0.00010796	410.75590172472295	37.67	0.71549	37.451	37.152	37.868	-0.2195					46	18	4	0	0	0	1.0574	2	3035	3035;3047		21.702	2.3424	1	2457600	+		59320	36838	41623	41686	64636;64637	64636					0.0797042731384181
PPPLLRGA	8	Unmodified	_PPPLLRGA_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.755615234375	2	410.755613	819.496673	-1.0051	-0.00041284	1.2129	0.00049819	0.20779	8.5351E-05	410.75597021768624	37.686	0.75007	37.468	37.144	37.894	-0.21848					50	19	4	0	0	0	1.0574	2	3033	3033;3048		21.702	1.2205	1	3096700	+		59321	36838	41623	41686	64638;64639	64638					0.0797042731384181
PPPLSSPVLAS	11	Unmodified	_PPPLSSPVLAS_					0	0	0		ENST00000262410.9_2_17:43971785-44039731:+|nuORF	ENST00000262410.9_2_17:43971785-44039731:+|nuORF	ENST00000262410.9_2_17:43971785-44039731:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.8012084960938	2	532.802957	1063.59136	-1.3863	-0.00073862	0.43422	0.00023136	-0.95207	-0.00050726	532.8030273004439	43.881	0.63149	43.637	43.378	44.01	-0.2444					43	16	4	0	0	0	0.93615	1	4057	4057		49.442	10.189	1	1454300			59322	11500	41624	41687	64640	64640					0.06210896274501465
PPPLSSPVLAS	11	Unmodified	_PPPLSSPVLAS_					0	0	0		ENST00000262410.9_2_17:43971785-44039731:+|nuORF	ENST00000262410.9_2_17:43971785-44039731:+|nuORF	ENST00000262410.9_2_17:43971785-44039731:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.802957	1063.59136	-1.1929	-0.00063557	0.14865	7.9204E-05	-1.0442	-0.00055637	532.8029047713658	43.888	0.51624	43.668	43.42	43.936	-0.21939	0.028502	1.9441E-05	NaN	49.442	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1529300			59323	11500	41624	41687							0.06210896274501465
PPPLTLVL	8	Unmodified	_PPPLTLVL_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;ENST00000592092.1_1_19:36224173-36224410:+|nuORF	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.7586669921875	2	425.275847	848.537141	0.40332	0.00017152	-3.8421	-0.001634	-3.4388	-0.0014624	425.27416187194365	31.997	1.5917	31.805	31.432	33.024	-0.19261					57	37	2	0	0	0	0.027866	1	2124	2124		1.619	0	1	139910			59324	11013	41625	41688	64641	64641					0.10681348913601596
PPPLWRLV	8	Unmodified	_PPPLWRLV_					0	0	0			REV__nc|ENSG00000187266|P19235-3|EPOR	REV__nc|ENSG00000187266|P19235-3|EPOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.7668151855469	2	489.300188	976.585822	-0.42602	-0.00020845	-0.93521	-0.0004576	-1.3612	-0.00066605	489.2997013925523	22.763	0.18473	22.577	22.507	22.692	-0.18539					5	3	2	0	0	0	0.027866	1	840	840		20.482	0	1	17957	+		59325	27927	41626	41689	64642	64642					0.09659262273351032
PPPMFYWYGRR	11	Unmodified	_PPPMFYWYGRR_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-5|CNTRL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.57958984375	3	490.576413	1468.70741	1.7392	0.00085323	4.4272	0.0021719	6.1665	0.0030251	490.5786192878495	18.865	1.0665	18.865	18.577	19.644	0					69	21	5	0	0	0	1.0655	1	353	353		20.837	0.52214	1	703660	+		59326	22451	41627	41690	64643	64643					-0.008194834264486417
PPPNALKH	8	Unmodified	_PPPNALKH_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.5264892578125	2	437.250695	872.486836	0.58635	0.00025638	-4.1281	-0.001805	-3.5417	-0.0015486	437.24945199979857	53.012	0.19875	52.753	52.683	52.882	-0.25838					6	4	2	0	0	0	0.027866	1	5531	5531		33.516	16.151	1	71624	+		59327	24756;36782	41628	41691	64644	64644					0.04549239308448705
PPPNPPLPSR	10	Unmodified	_PPPNPPLPSR_					0	0	0			REV__ENST00000589123.5_2_19:3453803-3456595:+|nuORF	REV__ENST00000589123.5_2_19:3453803-3456595:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.30029296875	2	536.300916	1070.58728	0.11515	6.1755E-05	-0.41062	-0.00022022	-0.29547	-0.00015846	536.3005721052542	21.632	0.57207	21.455	21.209	21.781	-0.17721					20	11	2	0	0	0	1.0393	1	704	704		40.778	0	1	265480	+		59328	35665	41629	41692	64645	64645					0.054808515714512396
PPPPAGPGSA	10	Unmodified	_PPPPAGPGSA_					0	0	0		ENST00000426635.6_1_6:72128415-72130440:-|nuORF	ENST00000426635.6_1_6:72128415-72130440:-|nuORF	ENST00000426635.6_1_6:72128415-72130440:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2201843261719	2	424.21906	846.423567	1.1722	0.00049729	-2.2617	-0.00095947	-1.0895	-0.00046218	424.21803932906255	99.133	1.6852	99.009	98.111	99.796	-0.12458					116	42	4	0	0	0	1.1166	1	12398	12398		30.504	3.8107	1	4851200			59329	14091	41630	41693	64646	64646					-0.005787461994259502
PPPPAPASGG	10	Unmodified	_PPPPAPASGG_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2187194824219	2	424.21906	846.423567	-0.22547	-9.5648E-05	-1.0525	-0.00044649	-1.278	-0.00054214	424.2185251046166	98.415	2.1934	98.415	97.594	99.787	0					127	50	5	0	0	0	1.0541	1	12578	12578		38.806	1.647	1	7415800	+		59330	25323;36836	41631	41694	64647	64647					-0.005787461994259502
PPPPAPASGG	10	Unmodified	_PPPPAPASGG_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.21868896484375	2	424.21906	846.423567	0.15091	6.4021E-05	-1.3415	-0.00056911	-1.1906	-0.00050509	424.2184034867315	98.49	2.0564	98.5	97.728	99.785	0.010239					126	47	5	0	0	0	1.1166	1	12573	12573		30.504	1.3541	1	7266600	+		59331	25323;36836	41631	41694	64648	64648					-0.005787461994259502
PPPPAPASGG	10	Unmodified	_PPPPAPASGG_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.2184753417969	2	424.21906	846.423567	0.85808	0.00036401	-2.1296	-0.00090342	-1.2715	-0.00053941	424.21808049737785	98.51	2.2248	98.507	97.634	99.859	-0.0026703					125	51	4	0	0	0	1.0408	1	12467	12467		40.573	7.7602	1	7197400	+		59332	25323;36836	41631	41694	64649	64649					-0.005787461994259502
PPPPAPASGG	10	Unmodified	_PPPPAPASGG_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.21868896484375	2	424.21906	846.423567	0.87142	0.00036967	-1.9355	-0.00082109	-1.0641	-0.00045142	424.2181747148938	99.092	1.6406	98.957	98.148	99.788	-0.13526					107	39	4	0	0	0	1.0004	1	12322	12322		45.952	8.7928	1	5421400	+		59333	25323;36836	41631	41694	64650	64650					-0.005787461994259502
PPPPAPASGG	10	Unmodified	_PPPPAPASGG_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.2188720703125	2	424.21906	846.423567	1.1722	0.00049729	-2.2617	-0.00095947	-1.0895	-0.00046218	424.21803932906255	99.133	1.6852	99.009	98.111	99.796	-0.12458					116	42	4	0	0	0	1.0665	1	12339	12339		37.159	5.2042	1	4851200	+		59334	25323;36836	41631	41694	64651	64651					-0.005787461994259502
PPPPAPASGG	10	Unmodified	_PPPPAPASGG_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	424.2186584472656	2	424.21906	846.423567	0.29841	0.00012659	-1.4896	-0.0006319	-1.1912	-0.00050531	424.2183732670556	99.233	1.6227	99.064	98.24	99.863	-0.16863					102	39	4	0	0	0	1.0541	1	12291	12291		38.806	1.647	1	4500900	+		59335	25323;36836	41631	41694	64652	64652					-0.005787461994259502
PPPPAPNSA	9	Unmodified	_PPPPAPNSA_					0	0	0			REV__ENST00000508973.5_1_5:21473671-21473779:+|nuORF	REV__ENST00000508973.5_1_5:21473671-21473779:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2186584472656	2	424.21906	846.423567	-0.22547	-9.5648E-05	-1.0525	-0.00044649	-1.278	-0.00054214	424.2185251046166	98.415	2.1934	98.415	97.594	99.787	0					127	50	5	0	0	0	0.83071	1	12532	12532		37.159	0	1	7415800	+		59336	34079	41632	41695	64653	64653					-0.005787461994373189
PPPPGQPN	8	Unmodified	_PPPPGQPN_					0	0	0			REV__ENSG00000251655|ENST00000500254|PRB1	REV__ENSG00000251655|ENST00000500254|PRB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	402.20513916015625	2	402.205953	802.397353	1.094	0.00044	-1.9387	-0.00077974	-0.84469	-0.00033974	402.20510936484203	95.336	1.7812	95.336	94.659	96.44	0					129	41	5	0	0	0	1.0239	1	12101	12101		33.516	0	1	7302700	+		59337	22591	41633	41696	64654	64654					-0.01175015370915844
PPPPIRFPLI	10	Unmodified	_PPPPIRFPLI_					0	0	0			REV__ENSG00000162105|ENST00000601538|SHANK2	REV__ENSG00000162105|ENST00000601538|SHANK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	574.3118896484375	2	573.855327	1145.6961	-0.3776	-0.00021669	-0.50666	-0.00029075	-0.88426	-0.00050744	573.8550481713824	27.546	0.48077	27.533	27.241	27.722	-0.012983					20	12	2	0	0	0	0.03519	1	1511	1511		24.203	11.996	1	44297	+		59338	25417	41634	41697	64655	64655					0.12908062541737308
PPPPKETL	8	Unmodified	_PPPPKETL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.7528076171875	2	439.752736	877.490919	-0.39552	-0.00017393	0.75964	0.00033405	0.36412	0.00016012	439.75295794926075	23.441	0.93705	23.261	23.021	23.958	-0.17989					58	21	4	0	0	0	0.77775	1	919	919		60.972	3.1607	1	2502700			59339	6721	41635	41698	64656	64656					0.04727284011528354
PPPPPGPPPPA	11	Unmodified	_PPPPPGPPPPA_					0	0	0			REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.3034362792969	2	510.779285	1019.54402	-1.0838	-0.00055357	-0.14203	-7.2545E-05	-1.2258	-0.00062611	510.7790996082748	26.859	0.49993	26.94	26.671	27.171	0.081293					27	12	3	0	0	0	0.02474	1	1328	1328		24.203	0	1	770610	+		59340	23334	41636	41699	64657	64657					0.0350266179417531
PPPPPGPPPPA	11	Unmodified	_PPPPPGPPPPA_					0	0	0			REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	510.779285	1019.54402	-0.57531	-0.00029386	-2.5725	-0.001314	-3.1478	-0.0016078	510.77812749267827	26.964	0.42293	26.722	26.488	26.911	-0.24217	-0.098807	-0.0017094	NaN	11.511	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199920	+		59341	23334	41636	41699							0.0350266179417531
PPPPPGPPPPA	11	Unmodified	_PPPPPGPPPPA_					0	0	0			REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	REV__nc|ENSG00000132970|Q9UPY6-2|WASF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.779285	1019.54402	-0.45276	-0.00023126	-1.8902	-0.00096549	-2.343	-0.0011967	510.77812683378386	26.772	0.47193	26.604	26.379	26.851	-0.16816	-0.2169	-0.0010124	NaN	11.511	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144530	+		59342	23334	41636	41699							0.0350266179417531
PPPPPPALD	9	Unmodified	_PPPPPPALD_					0	0	0		nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000101901|ENST00000394780|ALG13	nc|ENSG00000101901|Q9NP73-3|ALG13	nc|ENSG00000101901|Q9NP73-3|ALG13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.27410888671875	2	450.744911	899.475269	-1.3261	-0.00059772	1.3013	0.00058654	-0.024807	-1.1181E-05	450.74770997123926	92.211	0.1226	92.067	91.965	92.087	-0.14356					4	2	2	0	0	0	0.024487	1	11317	11317		17.365	9.1337	1	43820			59343	2359	41637	41700	64658	64658					0.0215099749447063
PPPPPPETFG	10	Unmodified	_PPPPPPETFG_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7928466796875	2	518.260925	1034.5073	-1.2386	-0.00064191	-2.7127	-0.0014059	-3.9513	-0.0020478	518.2596976399834	55.093	0.75334	55.191	54.845	55.598	0.098015					29	20	2	0	0	0	0.03519	1	6031	6031		23.042	0	1	254680	+		59344	20254	41638	41701	64659	64659					-0.00857634822386899
PPPPPPFIIV	10	Unmodified	_PPPPPPFIIV_					0	0	0			REV__nc|ENSG00000157111|Q8WVE6-2|TMEM171	REV__nc|ENSG00000157111|Q8WVE6-2|TMEM171	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3074951171875	2	537.323328	1072.6321	-0.39558	-0.00021256	2.181	0.0011719	1.7854	0.00095933	537.3224544318186	68.177	0.11513	68.177	68.102	68.217	0					4	2	2	0	0	0	0.03519	1	8162	8162		35.201	0	1	46857	+		59345	25114	41639	41702	64660	64660					0.09869282384806866
PPPPPPPGLG	10	Unmodified	_PPPPPPPGLG_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;ENST00000533421.2_1_11:65820160-65823021:+|nuORF;nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91	ENSG00000087365|ENST00000322535|SF3B2;REV__ENSG00000169992|ENST00000302926|NLGN2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2304382324219	2	463.260728	924.506903	0.29611	0.00013718	-4.163	-0.0019286	-3.8669	-0.0017914	463.25869523583	36.72	1.0568	36.758	36.511	37.568	0.038044					46	27	3	0	0	0	0.03519	1	3001	3001		12.959	0	1	436140			59346	1848;26424	41640	41703	64661	64661					0.04162990248426013
PPPPPQQPPTP	11	Unmodified	_PPPPPQQPPTP_					0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.7849731445312	2	576.806031	1151.59751	-0.036473	-2.1038E-05	-4.418	-0.0025484	-4.4545	-0.0025694	576.8032116767771	34.779	0.60302	34.564	34.347	34.95	-0.21556					26	14	3	0	0	0	0.024795	1	2585	2585		51.193	24.5	1	268550	+		59347	21005	41641	41704	64662	64662					0.027774145060448063
PPPPPVIKPQ	10	Unmodified	_PPPPPVIKPQ_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3059692382812	2	535.32386	1068.63317	-0.94503	-0.0005059	3.1708	0.0016974	2.2258	0.0011915	535.325886829548	77.967	0.61745	77.983	77.739	78.356	0.015907					27	14	2	0	0	0	0.03519	1	9608	9608		20.947	6.8098	1	476320			59348	3747	41642	41705	64663	64663					0.10159496753703934
PPPPPVIKPQ	10	Unmodified	_PPPPPVIKPQ_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.32386	1068.63317	-0.53729	-0.00028763	2.8854	0.0015446	2.3481	0.001257	535.3257048056853	77.887	0.57016	77.887	77.632	78.202	0	0.10661	-0.00025911	NaN	51.335	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620560			59349	3747	41642	41705							0.10159496753703934
PPPPRLGAH	9	Unmodified	_PPPPRLGAH_					0	0	0		ENST00000398136.6_2_11:102323274-102323652:-|nuORF	ENST00000398136.6_2_11:102323274-102323652:-|nuORF	ENST00000398136.6_2_11:102323274-102323652:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.269287109375	2	471.269419	940.524284	-1.1159	-0.00052591	1.3415	0.00063221	0.22557	0.0001063	471.2698925133903	40.242	1.038	40.012	39.733	40.771	-0.2302					50	27	3	0	0	0	0.75282	1	3445	3445		42.474	0	1	2096900			59350	13617	41643	41706	64664	64664					0.05164330574086762
PPPPSPTHAL	10	Unmodified	_PPPPSPTHAL_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3004455566406	2	507.274367	1012.53418	-0.76438	-0.00038775	-3.6866	-0.0018701	-4.451	-0.0022579	507.27247179231415	32.588	0.83161	32.588	32.186	33.018	0					38	21	2	0	0	0	0.03519	1	2268	2268		29.15	11.785	1	1224800	+		59351	20764	41644	41707	64665	64665					0.028414737887942465
PPPPSRPAGAP	11	Unmodified	_PPPPSRPAGAP_					0	0	0			REV__ENSG00000167617|ENST00000301200|CDC42EP5	REV__ENSG00000167617|ENST00000301200|CDC42EP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2571411132812	2	522.285266	1042.55598	-0.9113	-0.00047596	-2.8171	-0.0014713	-3.7284	-0.0019473	522.2835231465973	22.58	0.64937	22.58	22.245	22.894	0					28	13	3	0	0	0	0.024812	1	829	829		49.536	18.006	1	96187	+		59352	26166	41645	41708	64666	64666					0.036402785373638835
PPPPVPPPP	9	Unmodified	_PPPPVPPPP_					0	0	0		ENSG00000112290|ENST00000392589|WASF1;YLPM1|p.S267Rfs*8|1|0.16|ENSG00000119596|chr14:74764289-74764290|GT/-|frameshift_variant;YLPM1|p.N271Tfs*18|1|0.39|ENSG00000119596|chr14:74764297-74764297|A/-|frameshift_variant;nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1;ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK	ENSG00000112290|ENST00000392589|WASF1;nc|ENSG00000119596|P49750-3|YLPM1;REV__nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000090061|ENST00000389879|CCNK;REV__nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.2080383300781	2	447.757821	893.501089	-0.061354	-2.7472E-05	-3.675	-0.0016455	-3.7363	-0.001673	447.7561153743766	21.625	0.43575	21.435	21.177	21.613	-0.19072					11	8	2	0	0	0	0.024475	1	702	702		39.021	0	1	24334			59353	3747;22466;28176;3193;1923	41646	41709	64667	64667					0.05007891736750025
PPPQAHRETN	10	Unmodified	_PPPQAHRETN_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.811767578125	2	573.786161	1145.55777	-0.46118	-0.00026462	-1.1299	-0.00064834	-1.5911	-0.00091296	573.7855016974654	32.099	0.34418	31.942	31.819	32.163	-0.15772					10	7	2	0	0	0	0.03519	1	2158	2158		31.53	0	1	99687	+		59354	28725	41647	41710	64668	64668					-0.009187124446725647
PPPQLSSLGR	10	Unmodified	_PPPQLSSLGR_					0	0	0			REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.74658203125	2	526.298373	1050.58219	-0.49807	-0.00026213	-4.2906	-0.0022582	-4.7887	-0.0025203	526.2972191353151	31.391	0.24547	31.402	31.299	31.545	0.011797					7	5	2	0	0	0	0.03519	1	2071	2071		35.152	0	1	35797	+		59355	19084	41648	41711	64669	64669					0.058925477088678235
PPPRPGPPP	9	Unmodified	_PPPRPGPPP_					0	0	0			REV__nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	REV__nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.25830078125	2	456.25852	910.502486	-0.074755	-3.4108E-05	-0.37108	-0.00016931	-0.44584	-0.00020342	456.2583876450436	32.48	3.75	32.48	31.343	35.093	0					278	97	3	0	0	0	0.15889	1	2213	2213		97.473	12.113	1	17591000	+		59356	36904	41649	41712	64670	64670					0.04365525825517125
PPPRPRGG	8	Unmodified	_PPPRPRGG_					0	0	0		ENST00000505932.5_1_1:205492708-205498898:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF	ENST00000505932.5_1_1:205492708-205498898:+|nuORF	ENST00000505932.5_1_1:205492708-205498898:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.23919677734375	2	417.240661	832.46677	-0.34005	-0.00014188	-3.1739	-0.0013243	-3.514	-0.0014662	417.2392593971876	87.93	0.84181	87.751	87.405	88.247	-0.17875					38	20	2	0	0	0	1.0574	1	10727	10727		26.796	0	1	2391200			59357	15735	41650	41713	64671	64671					0.04383488368523558
PPPRRTRDC	9	Unmodified	_PPPRRTRDC_					0	0	0		ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7672119140625	2	549.285274	1096.556	-0.5979	-0.00032842	2.8422	0.0015612	2.2443	0.0012328	549.2865764094114	31.677	0.78541	31.525	31.124	31.91	-0.15231					41	19	3	0	0	0	0.024436	1	2129	2129		23.042	0	1	442140			59358	7084	41651	41714	64672	64672					0.011579552657167369
PPPRVNRKV	9	Unmodified	_PPPRVNRKV_					0	0	0			REV__ENST00000463906.1_1_1:43630116-43636618:-|nuORF	REV__ENST00000463906.1_1_1:43630116-43636618:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7684936523438	2	531.830175	1061.6458	-0.69332	-0.00036873	-0.1845	-9.8122E-05	-0.87781	-0.00046685	531.8298997763314	22.927	0.36298	22.866	22.663	23.026	-0.060862					10	7	2	0	0	0	0.024541	1	857	857		11.511	0	1	36227	+		59359	32951	41652	41715	64673	64673					0.11743952936603819
PPPSLPLPL	9	Unmodified	_PPPSLPLPL_					0	0	0		ENSG00000203989|ENST00000371402|RHOXF2B;ENSG00000131721|ENST00000371388|RHOXF2	REV__SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|29|3|sense	REV__SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|29|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.81304931640625	2	465.786579	929.558604	-0.64536	-0.0003006	-3.6922	-0.0017198	-4.3375	-0.0020204	465.7847532792027	38.309	0.74605	38.09	37.861	38.607	-0.21849					32	20	2	0	0	0	0.024386	1	3119	3119		42.474	0	1	1327900			59360	4542	41653	41716	64674	64674					0.09100733942329953
PPPSLPRRR	9	Unmodified	_PPPSLPRRR_					0	0	0		ENST00000242719.3_1_1:51702154-51702313:+|nuORF	ENST00000242719.3_1_1:51702154-51702313:+|nuORF	ENST00000242719.3_1_1:51702154-51702313:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3276977539062	2	538.327799	1074.64105	-0.46158	-0.00024848	-0.83614	-0.00045012	-1.2977	-0.0006986	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.99229	1	12803	12803		21.96	1.013	1	22988000			59361	11289	41654	41717	64675	64675					0.1067106879381754
PPPSPVRN	8	Unmodified	_PPPSPVRN_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA;REV__LRBA-SH3D19|2|fusion	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	431.5510559082031	2	432.240327	862.466101	-0.80306	-0.00034711	2.4335	0.0010519	1.6305	0.00070475	432.24147086596383	36.281	0.31189	36.281	36.162	36.474	0					11	8	2	0	0	0	0.027866	1	2891	2891		44.117	19.914	1	82998	+		59362	28437;36318	41655	41718	64676	64676					0.02936648928800878
PPPTILKS	8	Unmodified	_PPPTILKS_					0	0	0			REV__ENST00000581182.1_1_17:57247113-57262574:+|nuORF	REV__ENST00000581182.1_1_17:57247113-57262574:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2654724121094	2	426.763104	851.511654	0.15038	6.4177E-05	3.0096	0.0012844	3.16	0.0013486	426.76429196972686	66.055	0.52132	66.085	65.774	66.296	0.030106					32	13	3	0	0	0	0.027866	1	7797	7797		3.41	0	1	1205700	+		59363	20380	41656	41719	64677	64677					0.07995874391178859
PPPTPSGLL	9	Unmodified	_PPPTPSGLL_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.75262451171875	2	439.752736	877.490919	-0.031776	-1.3974E-05	0.39941	0.00017564	0.36763	0.00016167	439.7527511396081	23.477	1.0878	23.275	23.014	24.102	-0.20193					67	24	4	0	0	0	0.55828	1	925	925		55.504	5.4797	1	1362200	+		59364	36781	41657	41720	64678	64678					0.04727284011528354
PPPTPSGLL	9	Unmodified	_PPPTPSGLL_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.7530517578125	2	439.752736	877.490919	2.2082	0.00097105	-1.9228	-0.00084557	0.28534	0.00012548	439.7517476827268	23.455	1.0731	23.264	22.988	24.061	-0.19117					63	24	4	0	0	0	0.55828	1	892	892		55.504	3.205	1	2578900	+		59365	36781	41657	41720	64679	64679					0.04727284011528354
PPPVELEV	8	Unmodified	_PPPVELEV_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.7528076171875	2	440.244744	878.474934	-0.32759	-0.00014422	-2.2247	-0.00097943	-2.5523	-0.0011237	440.2436261248716	23.761	0.62239	23.581	23.201	23.824	-0.17989					30	14	3	0	0	0	0.027866	1	931	931		35.201	1.6851	1	222860			59366	2770	41658	41721	64680	64680					0.030835777746119675
PPPVFRVCEL	10	Unmodified	_PPPVFRVCEL_					0	0	0			REV__ENST00000520099.5_1_8:92145476-92219037:+|nuORF	REV__ENST00000520099.5_1_8:92145476-92219037:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.3108520507812	2	578.812802	1155.61105	0.2041	0.00011814	-1.3197	-0.00076387	-1.1156	-0.00064573	578.8120288489279	111.02	0.069511	110.87	110.84	110.91	-0.1469					4	2	2	0	0	0	0.03519	1	13564	13564		24.203	0	1	10915	+		59367	28794	41659	41722	64681	64681					0.03946949013629819
PPPVSLFSFQ	10	Unmodified	_PPPVSLFSFQ_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.79541015625	2	559.797675	1117.5808	0.19867	0.00011121	-3.1559	-0.0017666	-2.9572	-0.0016554	559.7957126645771	16.713	0.61002	16.566	16.433	17.043	-0.14753					37	21	3	0	0	0	1.0992	1	87	87		32.812	7.2384	1	151580			59368	4229	41660	41723	64682	64682					0.026709136201134243
PPPVWLELE	9	Unmodified	_PPPVWLELE_					0	0	0			REV__ENST00000529983.2_1_12:89918135-89918465:-|nuORF	REV__ENST00000529983.2_1_12:89918135-89918465:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.3214721679688	2	540.292225	1078.5699	-0.55222	-0.00029836	0.88668	0.00047907	0.33446	0.00018071	540.2927323146172	104.13	0.53796	103.96	103.64	104.17	-0.16791					22	13	3	0	0	0	0.024541	1	12918	12918		12.959	0	1	742310	+		59369	34524	41661	41724	64683	64683					0.033755112457811265
PPPYVVEWFK	10	Unmodified	_PPPYVVEWFK_					0	0	0		nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.2460021972656	3	421.225375	1260.6543	3.4869	0.0014688	-0.58428	-0.00024611	2.9027	0.0012227	421.22518532601345	17.397	0.19865	17.397	17.25	17.449	0					8	3	3	0	0	0	0.03519	1	153	153		16.007	1.3131	1	22700			59370	1699	41662	41725	64684	64684					0.03439462062556231
PPQARPSPL	9	Unmodified	_PPQARPSPL_					0	0	0			REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2543640136719	2	481.774534	961.534515	-0.79257	-0.00038184	1.0417	0.00050185	0.2491	0.00012001	481.77608142804513	30.433	0.71502	30.255	29.782	30.497	-0.17818					21	16	2	0	0	0	0.024319	1	1967	1967		31.53	0	1	160820	+		59371	37168	41663	41726	64685	64685					0.052208935086468955
PPQGHTPT	8	Unmodified	_PPQGHTPT_					0	0	0			REV__ENST00000372923.7_1_9:131017032-131017254:+|nuORF	REV__ENST00000372923.7_1_9:131017032-131017254:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.7084655761719	2	417.70886	833.403166	1.0537	0.00044014	-0.92999	-0.00038846	0.12371	5.1675E-05	417.7080221269448	99.009	0.94334	98.884	98.328	99.272	-0.12459					41	23	3	0	0	0	1.0338	1	12257	12257		31.955	0	1	140550	+		59372	31224	41664	41727	64686	64686					-0.02019916859251225
PPQGPPPAS	9	Unmodified	_PPQGPPPAS_					0	0	0			REV__chr12:121994197-121999716|119|12.8|0.02|9.08|+|2|TE_info:SVA_F,SVA_F_dup703,SVA,Retroposon,donor,+,121993985,121994197|None,CFAP251|2	REV__chr12:121994197-121999716|119|12.8|0.02|9.08|+|2|TE_info:SVA_F,SVA_F_dup703,SVA,Retroposon,donor,+,121993985,121994197|None,CFAP251|2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.2185974121094	2	424.21906	846.423567	0.87142	0.00036967	-1.9355	-0.00082109	-1.0641	-0.00045142	424.2181747148938	99.092	1.6406	98.957	98.148	99.788	-0.13526					107	39	4	0	0	0	0.85329	1	12303	12303		35.618	0	1	5421400	+		59373	19356	41665	41728	64687	64687					-0.005787461994259502
PPQGRRRPV	9	Unmodified	_PPQGRRRPV_					0	0	0		ENST00000523903.5_1_17:39991516-39992234:-|nuORF;ENST00000495317.1_1_17:39992012-39992445:-|nuORF	ENST00000523903.5_1_17:39991516-39992234:-|nuORF	ENST00000523903.5_1_17:39991516-39992234:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.81689453125	2	531.817599	1061.62064	0.30294	0.00016111	-2.0038	-0.0010657	-1.7009	-0.00090455	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.90698	1	10987	10987		31.955	0.42505	1	3405600			59374	15549	41666	41729	64688	64688					0.09229898134026371
PPQIVIAS	8	Unmodified	_PPQIVIAS_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.7461242675781	2	412.747453	823.480354	-0.24401	-0.00010072	-2.7496	-0.0011349	-2.9936	-0.0012356	412.7462093954923	84.44	1.6819	84.368	83.7	85.382	-0.072769					103	39	4	0	0	0	1.0574	1	10577	10577		26.796	0	1	6858600	+		59375	37137	41667	41730	64689	64689					0.06155301357080134
PPQIVIAS	8	Unmodified	_PPQIVIAS_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.7463073730469	2	412.747453	823.480354	0.7645	0.00031555	-3.8759	-0.0015998	-3.1114	-0.0012842	412.7457683107616	84.583	1.9803	84.424	83.671	85.651	-0.15869					114	46	4	0	0	0	1.0574	1	10212	10212		26.796	5.0938	1	6553300	+		59376	37137	41667	41730	64690	64690					0.06155301357080134
PPQIVIAS	8	Unmodified	_PPQIVIAS_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.7463684082031	2	412.747453	823.480354	0.66518	0.00027455	-3.7783	-0.0015595	-3.1131	-0.0012849	412.74581110347407	84.535	2.0721	84.397	83.629	85.702	-0.13789					118	48	4	0	0	0	1.0574	1	10225	10225		26.796	1.3459	1	4796400	+		59377	37137	41667	41730	64691	64691					0.06155301357080134
PPQLGHLGAL	10	Unmodified	_PPQLGHLGAL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|315|2|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|315|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2796630859375	2	501.790184	1001.56581	-0.76504	-0.00038389	1.6388	0.00082235	0.8738	0.00043846	501.7907599825032	34.893	0.61651	34.872	34.397	35.013	-0.021763					21	15	2	0	0	0	0.03519	1	2573	2573		11.511	0	1	90751	+		59378	36272	41668	41731	64692	64692					0.06509466542752307
PPQLGHLGAL	10	Unmodified	_PPQLGHLGAL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|315|2|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|315|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.790184	1001.56581	-0.53931	-0.00027062	0.65144	0.00032689	0.11213	5.6266E-05	501.7904055271817	35.048	0.47992	35.048	34.826	35.306	0	0.062453	-0.00046736	NaN	6.7355	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130690	+		59379	36272	41668	41731							0.06509466542752307
PPQLGHLGAL	10	Unmodified	_PPQLGHLGAL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|315|2|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|315|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.790184	1001.56581	-0.48116	-0.00024144	1.6774	0.00084169	1.1962	0.00060025	501.79019731674424	34.994	0.36464	35.038	34.756	35.12	0.044056	0.051771	0.00056225	NaN	6.7355	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97690	+		59380	36272	41668	41731							0.06509466542752307
PPQLGSPNY	9	Unmodified	_PPQLGSPNY_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000129159|P48547|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7767028808594	2	486.742899	971.471246	-0.55946	-0.00027231	-1.632	-0.00079436	-2.1915	-0.0010667	486.7419980763188	28.921	0.87307	29.002	28.657	29.53	0.080811					51	21	3	0	0	0	0.024487	1	1745	1745		24.203	1.1603	1	4196400			59381	4333	41669	41732	64693	64693					-0.015630919992418058
PPQLLGPP	8	Unmodified	_PPQLLGPP_					0	0	0			REV__ENSG00000213999|ENST00000424583|MEF2B	REV__ENSG00000213999|ENST00000424583|MEF2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.8915710449219	2	409.742171	817.469789	-0.43643	-0.00017882	0.90461	0.00037066	0.46818	0.00019183	409.74241994416985	28.011	0.73188	27.843	27.649	28.381	-0.16847					35	17	3	0	0	0	0.027866	1	1663	1663		44.531	14.69	1	449490	+		59382	28763	41670	41733	64694	64694					0.0537531870265866
PPQLLLPSL	9	Unmodified	_PPQLLLPSL_					0	0	0			REV__ENST00000496841.5_1_2:128377805-128378036:+|nuORF	REV__ENST00000496841.5_1_2:128377805-128378036:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2927551269531	2	489.305136	976.595718	-0.94557	-0.00046267	1.0483	0.00051295	0.10276	5.0282E-05	489.30545241647656	60.894	0.56326	60.965	60.639	61.203	0.071125					22	14	2	0	0	0	0.024436	1	6894	6894		38.806	6.8513	1	207430	+		59383	33838	41671	41734	64695	64695					0.10648405488097978
PPQLSRRPR	9	Unmodified	_PPQLSRRPR_					0	0	0			REV__ENSG00000155622|ENST00000286049|XAGE2	REV__ENSG00000155622|ENST00000286049|XAGE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8302612304688	2	553.830706	1105.64686	0.19124	0.00010592	-1.4432	-0.00079928	-1.2519	-0.00069336	553.8297540429725	101.45	0.95807	101.45	101.15	102.11	-0.0054474					53	21	4	0	0	0	0.99229	1	12912	12912		21.96	0	1	742850	+		59384	25015	41672	41735	64696	64696					0.09826167305504896
PPQPTPPDPLP	11	Unmodified	_PPQPTPPDPLP_					0	0	0			REV__ENST00000498539.1_1_7:100174858-100175272:-|nuORF	REV__ENST00000498539.1_1_7:100174858-100175272:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	578.3089599609375	2	578.305864	1154.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.16	1	110.02	109.52	110.52	-0.13983								0	0	0	1.237	1	13513	13513		29.17	3.596	1		+		59385	33884	41673	41736	64697	64697					0.02605994786199517
PPQSPPKN	8	Unmodified	_PPQSPPKN_					0	0	0		ENST00000576359.1_1_17:80615741-80616143:-|nuORF;ENSG00000172476|ENST00000304236|RAB40A;ENSG00000141542|ENST00000571995|RAB40B;ENSG00000102128|ENST00000218249|RAB40AL	ENST00000576359.1_1_17:80615741-80616143:-|nuORF	ENST00000576359.1_1_17:80615741-80616143:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.7315979003906	2	432.732335	863.450116	0.26426	0.00011436	-1.3347	-0.00057759	-1.0705	-0.00046323	432.731609240746	98.399	2.1324	98.399	97.814	99.946	0					148	49	4	0	0	0	1.043	1	12629	12629		30.504	0	1	3598600			59386	2384	41674	41737	64698	64698					0.012929426918958598
PPQSPQGASAF	11	Unmodified	_PPQSPQGASAF_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.779296875	2	543.764363	1085.51417	-0.59588	-0.00032402	3.2124	0.0017468	2.6165	0.0014228	543.7663587544638	34.967	0.5175	34.754	34.56	35.077	-0.21246					21	12	3	0	0	0	0.024756	1	2663	2663		29.17	12.697	1	107790			59387	10168	41675	41738	64699	64699					-0.025163219418118388
PPQSRLRP	8	Unmodified	_PPQSRLRP_					0	0	0			REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	REV__ENST00000569516.5_1_16:923326-923722:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7796936035156	2	475.780151	949.545748	0.6774	0.0003223	-0.48559	-0.00023103	0.19182	9.1262E-05	475.77969282192964	18.36	0.39476	18.228	18.056	18.45	-0.13147					12	7	2	0	0	0	1.0574	1	281	281		25.45	2.4077	1	121740	+		59388	35372	41676	41739	64700	64700					0.06895715602809105
PPQSTFTTA	9	Unmodified	_PPQSTFTTA_					0	0	0			REV__SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|22|2|sense	REV__SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|22|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.2342529296875	2	475.234907	948.455261	1.1983	0.00056949	-1.9858	-0.00094373	-0.78748	-0.00037424	475.23395340444677	105.09	0.65389	105.09	104.71	105.36	0					49	20	3	0	0	0	0.92825	1	13475	13475		30.504	5.0535	1	364730	+		59389	37641	41677	41740	64701	64701					-0.021027982361374598
PPQSTFTTA	9	Unmodified	_PPQSTFTTA_					0	0	0			REV__SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|22|2|sense	REV__SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|22|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2348937988281	2	475.234907	948.455261	0.38595	0.00018342	-1.1124	-0.00052865	-0.72644	-0.00034523	475.2343641896196	105.18	0.59084	105.18	104.95	105.54	-0.0015945					37	19	3	0	0	0	0.92825	1	13429	13429		30.504	1.3541	1	297650	+		59390	37641	41677	41740	64702	64702					-0.021027982361374598
PPQSVTVLTVG	11	Unmodified	_PPQSVTVLTVG_					0	0	0		ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant;nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3123168945312	2	549.313689	1096.61282	0.76314	0.0004192	-3.5274	-0.0019376	-2.7642	-0.0015184	549.3116901827294	19.194	0.53915	19.194	18.972	19.511	0					33	10	5	0	0	0	1.0292	1	399	399		30.318	2.4355	1	516770			59391	9395	41678	41741	64703	64703					0.06838281303203075
PPQVVGGPN	9	Unmodified	_PPQVVGGPN_					0	0	0			REV__ENST00000589149.5_3_19:12812449-12813652:-|nuORF	REV__ENST00000589149.5_3_19:12812449-12813652:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7318420410156	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	0.83071	1	12291	12291		37.159	0	1	2327700	+		59392	35668	41679	41742	64704	64704					0.012929426919072284
PPRGGHLLF	9	Unmodified	_PPRGGHLLF_					0	0	0		ENST00000571240.1_1_17:7942473-7945810:+|nuORF;nc|ENSG00000179593|O15296-2|ALOX15B;nc|ENSG00000179593|O15296-3|ALOX15B;nc|ENSG00000179593|O15296-4|ALOX15B;ENSG00000179593|ENST00000380183|ALOX15B	ENST00000571240.1_1_17:7942473-7945810:+|nuORF	ENST00000571240.1_1_17:7942473-7945810:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2838134765625	2	497.285069	992.555585	-0.27321	-0.00013586	-1.9413	-0.00096538	-2.2145	-0.0011012	497.2839926325667	63.154	0.93897	62.97	62.671	63.61	-0.18386					50	23	3	0	0	0	0.36105	1	7136	7136		68.485	2.0554	1	1119700			59393	8907	41680	41743	64705	64705					0.059009036081761224
PPRGLKKPV	9	Unmodified	_PPRGLKKPV_					0	0	0			REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3126525878906	2	496.324194	990.633835	-0.21139	-0.00010492	4.1045	0.0020372	3.8931	0.0019322	496.32642987792514	73.77	0.23846	73.505	73.368	73.607	-0.26479					8	5	2	0	0	0	0.024535	1	8688	8688		33.516	1.5607	1	100400	+		59394	34784	41681	41744	64706	64706					0.13814336193411236
PPRGLKKPV	9	Unmodified	_PPRGLKKPV_					0	0	0			REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.3133544921875	2	496.324194	990.633835	-0.21585	-0.00010713	-0.054519	-2.7059E-05	-0.27037	-0.00013419	496.3240757300966	73.647	0.12205	73.457	73.355	73.478	-0.19026					4	2	2	0	0	0	0.024541	1	8661	8661		24.203	7.7296	1	67760	+		59395	34784	41681	41744	64707	64707					0.13814336193411236
PPRGPPPPP	9	Unmodified	_PPRGPPPPP_					0	0	0			REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2583312988281	2	456.25852	910.502486	-0.074755	-3.4108E-05	-0.37108	-0.00016931	-0.44584	-0.00020342	456.2583876450436	32.48	3.75	32.48	31.343	35.093	0					278	97	3	0	0	0	0.088511	10	2309	2237;2261;2285;2297;2309;2334;2346;2371;2383;2394		114.59	17.113	1	17591000	+		59396	35015	41682	41745	64708;64709;64710;64711;64712;64713;64714;64715;64716;64717	64712					0.04365525825505756
PPRGPPPPP	9	Unmodified	_PPRGPPPPP_					0	0	0			REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2581481933594	2	456.25852	910.502486	-0.36043	-0.00016445	-0.15612	-7.123E-05	-0.51655	-0.00023568	456.25850296783176	32.466	3.7606	32.477	31.214	34.975	0.011795					259	97	3	0	0	0	0.049708	9	2191	2191;2203;2215;2228;2239;2251;2300;2311;2351		128.82	15.344	1	19003000	+		59397	35015	41682	41745	64718;64719;64720;64721;64722;64723;64724;64725;64726	64718					0.04365525825505756
PPRGPPPPP	9	Unmodified	_PPRGPPPPP_					0	0	0			REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.25848388671875	2	456.25852	910.502486	0.10015	4.5696E-05	-0.56547	-0.000258	-0.46532	-0.0002123	456.258324860341	32.29	4.0779	32.353	30.991	35.069	0.062885					273	104	3	0	0	0	0.14199	8	2141	2141;2164;2176;2237;2261;2286;2299;2401		101.21	15.852	1	17962000	+		59398	35015	41682	41745	64727;64728;64729;64730;64731;64732;64733;64734	64727					0.04365525825505756
PPRGPPPPP	9	Unmodified	_PPRGPPPPP_					0	0	0			REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	REV__ENST00000555770.1_1_14:103988551-103989144:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	456.25852	910.502486	-0.074755	-3.4108E-05	-0.37108	-0.00016931	-0.44584	-0.00020342	456.2583876450436	32.48	3.75	32.48	31.343	35.093	0	0.04299	1.158E-05	NaN	128.82	278	97	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17591000	+		59399	35015	41682	41745							0.04365525825505756
PPRGRPPVT	9	Unmodified	_PPRGRPPVT_					0	0	0			REV__ENST00000358923.10_1_5:58334704-58335138:-|nuORF	REV__ENST00000358923.10_1_5:58334704-58335138:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7561950683594	2	488.787976	975.561398	0.11749	5.7428E-05	-1.5283	-0.00074704	-1.4109	-0.00068961	488.7871284708214	19.786	0.37308	19.786	19.556	19.929	0					13	7	2	0	0	0	0.024495	1	446	446		26.693	0	1	34270	+		59400	30869	41683	41746	64735	64735					0.07264002119836732
PPRKKKNHR	9	Unmodified	_PPRKKKNHR_					0	0	0		ENST00000253401.10_1_X:62974200-62974368:-|nuORF	ENST00000253401.10_1_X:62974200-62974368:-|nuORF	ENST00000253401.10_1_X:62974200-62974368:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.3380737304688	2	580.859798	1159.70504	-1.0128	-0.00058828	-0.035119	-2.0399E-05	-1.0479	-0.00060868	580.8596753168083	21.973	0.28733	21.782	21.613	21.9	-0.19072					8	5	2	0	0	0	0.024541	1	726	726		11.511	0	1	21316			59401	11369	41684	41747	64736	64736					0.13157848950777407
PPRKSSHVD	9	Unmodified	_PPRKSSHVD_					0	0	0		nc|ENSG00000161010|Q6NTE8-3|MRNIP;ENSG00000161010|ENST00000292586|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26171875	2	511.772522	1021.53049	0.2471	0.00012646	3.7433	0.0019157	3.9904	0.0020422	511.7743985443945	83.897	0.42631	83.759	83.506	83.932	-0.13821					14	9	2	0	0	0	0.02435	1	10137	10137		42.396	14.514	1	292450			59402	6857	41685	41748	64737	64737					0.020588040149505105
PPRLLRRH	8	Unmodified	_PPRLLRRH_					0	0	0			REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF	REV__ENST00000431297.1_1_21:15134673-15136650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.801025390625	2	522.830509	1043.64647	-0.15814	-8.2679E-05	0.35753	0.00018693	0.19939	0.00010425	522.8316266189776	19.578	0.61265	19.578	19.317	19.929	0					23	12	3	0	0	0	0.027866	1	449	449		21.702	0	1	204230	+		59403	32364	41686	41749	64738	64738					0.12638792376333186
PPRLPDPGGA	10	Unmodified	_PPRLPDPGGA_					0	0	0		ENSG00000225556|ENST00000694868|C2CD4D	ENSG00000225556|ENST00000694868|C2CD4D	ENSG00000225556|ENST00000694868|C2CD4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7561950683594	2	488.764166	975.513779	-0.16313	-7.9731E-05	3.5034	0.0017123	3.3403	0.0016326	488.76549374201295	19.807	0.91547	19.807	19.6	20.516	0					25	18	2	0	0	0	0.03519	1	446	446		14.865	0	1	28843			59404	10654	41687	41750	64739	64739					0.02504303129001073
PPRMTLQP	8	Unmodified	_PPRMTLQP_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.5499267578125	2	470.257662	938.500772	-0.02428	-1.1418E-05	0.29961	0.00014089	0.27533	0.00012947	470.25753990461726	40.657	0.323	40.432	40.296	40.619	-0.225					12	8	2	0	0	0	0.027866	1	3534	3534		19.36	4.6959	1	136770			59405	5279	41688	41751	64740	64740					0.029061487452622714
PPRNMLSSP	9	Unmodified	_PPRNMLSSP_					0	0	0			REV__ENST00000337120.9_2_16:28876623-28876749:+|nuORF	REV__ENST00000337120.9_2_16:28876623-28876749:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7716979980469	2	499.758027	997.5015	-0.62438	-0.00031204	1.3351	0.00066721	0.71069	0.00035517	499.7579323315869	30.734	0.78719	30.556	30.164	30.952	-0.17818					46	18	4	0	0	0	0.024535	1	2034	2034		18.324	0	1	869680	+		59406	30555	41689	41752	64741	64741					0.002649433943133772
PPRPARGSRL	10	Unmodified	_PPRPARGSRL_					0	0	0		ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.830322265625	2	553.830706	1105.64686	-0.078213	-4.3317E-05	-1.2618	-0.0006988	-1.34	-0.00074212	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.1088	1	11399	11399		31.53	0	1	4896800			59407	9011	41690	41753	64742	64742					0.09826167305527633
PPRPARGSRL	10	Unmodified	_PPRPARGSRL_					0	0	0		ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.83056640625	2	553.830706	1105.64686	0.11487	6.3616E-05	-1.4647	-0.00081117	-1.3498	-0.00074756	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.0508	2	11320	11320;11369		39.253	2.0937	1	4870500			59408	9011	41690	41753	64743;64744	64743					0.09826167305527633
PPRPARGSRL	10	Unmodified	_PPRPARGSRL_					0	0	0		ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8305053710938	2	553.830706	1105.64686	0.21415	0.0001186	-1.6041	-0.00088842	-1.39	-0.00076982	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0002	1	11342	11342		45.972	3.5761	1	4967900			59409	9011	41690	41753	64745	64745					0.09826167305527633
PPRPARGSRL	10	Unmodified	_PPRPARGSRL_					0	0	0		ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.82958984375	2	553.830706	1105.64686	0.42938	0.0002378	-1.7495	-0.00096891	-1.3201	-0.0007311	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.80817	1	10648	10648		60.118	14.146	1	1748900			59410	9011	41690	41753	64746	64746					0.09826167305527633
PPRPPKKKYQ	10	Unmodified	_PPRPPKKKYQ_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8690795898438	2	619.87204	1237.72953	-0.53181	-0.00032965	-3.5656	-0.0022102	-4.0974	-0.0025399	619.869574942614	104.77	0.53139	104.76	104.51	105.05	-0.0015945					37	16	3	0	0	0	1.1329	1	13359	13359		27.882	4.3595	1	203150			59411	3553	41691	41754	64747	64747					0.1201706431365892
PPRPVHPAPLP	11	Unmodified	_PPRPVHPAPLP_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428344726562	2	589.345658	1176.67676	-0.57069	-0.00033633	-4.2904	-0.0025285	-4.8611	-0.0028649	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.018	1	11630	11630		32.812	5.7651	1	17343000			59412	8182	41692	41755	64748	64748					0.09549106250847217
PPRPVRRSRP	10	Unmodified	_PPRPVRRSRP_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.5838623046875	3	406.582779	1216.72651	0.66258	0.00026939	1.9663	0.00079948	2.6289	0.0010689	406.9180894739433	110.55	0.22615	110.54	110.38	110.6	-0.011299					11	7	2	0	0	0	1.1103	1	13963	13963		16.007	0.67366	1	468100	+		59413	23356	41693	41756	64749	64749					0.12681233979515127
PPRQCMSLLAK	11	Unmodified	_PPRQCMSLLAK_					0	0	0			REV__ENSG00000123901|ENST00000243673|GPR83	REV__ENSG00000123901|ENST00000243673|GPR83	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.8399047851562	2	622.336118	1242.65768	-2.2817	-0.00142	3.0281	0.0018845	0.74642	0.00046452	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	1.0483	1	13548	13548		25.574	2.0514	1	1465400	+		59414	22718	41694	41757	64750	64750					0.04606065573284468
PPRQGKSTL	9	Unmodified	_PPRQGKSTL_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.2848815917969	2	492.285266	982.555979	-1.7175	-0.00084552	1.7477	0.00086038	0.030202	1.4868E-05	492.2860373425705	93.341	1.344	93.201	92.786	94.13	-0.13995					82	30	4	0	0	0	0.96906	1	11456	11456		26.693	2.4902	1	3197500			59415	6392	41695	41758	64751	64751					0.06400278537375925
PPRRAARVD	9	Unmodified	_PPRRAARVD_					0	0	0		ENST00000291592.5_1_21:45875446-45876486:+|nuORF	ENST00000291592.5_1_21:45875446-45876486:+|nuORF	ENST00000291592.5_1_21:45875446-45876486:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7802124023438	2	519.301781	1036.58901	0.44643	0.00023183	1.2066	0.00062661	1.6531	0.00085844	519.3022360904356	85.717	0.49854	85.717	85.457	85.956	0					22	11	2	0	0	0	0.024323	1	10775	10775		35.618	5.1146	1	302760			59416	11799	41696	41759	64752	64752					0.07217905380093725
PPRRAARVD	9	Unmodified	_PPRRAARVD_					0	0	0		ENST00000291592.5_1_21:45875446-45876486:+|nuORF	ENST00000291592.5_1_21:45875446-45876486:+|nuORF	ENST00000291592.5_1_21:45875446-45876486:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.301781	1036.58901	0.096132	4.9921E-05	2.0871	0.0010838	2.1832	0.0011338	519.3027562407533	85.743	0.46288	85.548	85.258	85.721	-0.19508	-0.027429	0.00024469	NaN	35.618	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62090			59417	11799	41696	41759							0.07217905380093725
PPRRAPAS	8	Unmodified	_PPRRAPAS_					0	0	0		ENST00000396556.6_1_3:32022633-32022780:-|nuORF	REV__ENSG00000105559|ENST00000263265|PLEKHA4	REV__ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2463073730469	2	426.245944	850.477334	0.4124	0.00017578	-0.055728	-2.3754E-05	0.35667	0.00015203	426.2457939199312	86.761	2.0846	86.782	86.157	88.241	0.021263					140	49	6	0	0	0	1.0338	1	10847	10847		31.955	5.1588	1	10449000	+		59418	21538	41697	41760	64753	64753					0.0461147102294035
PPRRAPAS	8	Unmodified	_PPRRAPAS_					0	0	0		ENST00000396556.6_1_3:32022633-32022780:-|nuORF	REV__ENSG00000105559|ENST00000263265|PLEKHA4	REV__ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2461242675781	2	426.245944	850.477334	0.26941	0.00011483	0.022771	9.706E-06	0.29218	0.00012454	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	1.0338	1	10561	10561		31.955	5.1588	1	14269000	+		59419	21538	41697	41760	64754	64754					0.0461147102294035
PPRRAPGG	8	Unmodified	_PPRRAPGG_					0	0	0		ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.23309326171875	2	404.232836	806.45112	1.1468	0.00046357	-1.3905	-0.00056207	-0.24367	-9.8499E-05	404.23205253167436	84.32	2.7374	84.32	83.562	86.3	0					145	64	4	0	0	0	1.0574	1	10538	10538		26.796	4.8362	1	14422000			59420	10861	41698	41761	64755	64755					0.040152018514731935
PPRRAPGG	8	Unmodified	_PPRRAPGG_					0	0	0		ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.23272705078125	2	404.232836	806.45112	1.5545	0.00062839	-1.9852	-0.00080248	-0.43067	-0.00017409	404.2317363749905	84.372	3.2452	84.398	82.917	86.162	0.026558					196	76	5	0	0	0	1.0574	2	10500	10500;10544		26.796	3.7536	1	13913000			59421	10861	41698	41761	64756;64757	64756					0.040152018514731935
PPRRAPGG	8	Unmodified	_PPRRAPGG_					0	0	0		ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2328796386719	2	404.232836	806.45112	1.0198	0.00041225	-1.4334	-0.00057943	-0.41358	-0.00016718	404.2320221194493	84.559	4.1783	84.356	82.19	86.368	-0.20329					189	97	3	0	0	0	1.0133	2	10249	10237;10249		35.201	5.3592	1	18249000			59422	10861	41698	41761	64758;64759	64759					0.040152018514731935
PPRRAPGG	8	Unmodified	_PPRRAPGG_					0	0	0		ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2322998046875	2	404.232836	806.45112	-0.8493	-0.00034331	-0.38129	-0.00015413	-1.2306	-0.00049744	404.23229146512006	81.705	0.8959	81.563	81.275	82.17	-0.14248					46	20	3	0	0	0	1.0574	1	9830	9830		26.796	3.2734	1	740400			59423	10861	41698	41761	64760	64760					0.040152018514731935
PPRRLLGMQ	9	Unmodified	_PPRRLLGMQ_					0	0	0			REV__ENST00000405486.5_2_22:41681548-41681698:-|nuORF	REV__ENST00000405486.5_2_22:41681548-41681698:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2739868164062	2	534.310761	1066.60697	-0.37942	-0.00020273	-0.38195	-0.00020408	-0.76137	-0.00040681	534.3105892317393	94.869	0.39348	94.873	94.607	95.001	0.0033722					14	8	2	0	0	0	0.024412	1	12013	12013		31.955	0	1	58414	+		59424	31909	41699	41762	64761	64761					0.07632904310594313
PPRRPGLRTG	10	Unmodified	_PPRRPGLRTG_					0	0	0		ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8301391601562	2	553.830706	1105.64686	0.11487	6.3616E-05	-1.4647	-0.00081117	-1.3498	-0.00074756	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.1267	1	11188	11188		29.15	1.0681	1	4870500			59425	17210	41700	41763	64762	64762					0.09826167305527633
PPRRPGLRTG	10	Unmodified	_PPRRPGLRTG_					0	0	0		ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8298950195312	2	553.830706	1105.64686	0.21415	0.0001186	-1.6041	-0.00088842	-1.39	-0.00076982	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0781	2	11244	11220;11244		35.618	3.8548	1	4967900			59426	17210	41700	41763	64763;64764	64764					0.09826167305527633
PPRRPGLRTG	10	Unmodified	_PPRRPGLRTG_					0	0	0		ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8314208984375	2	553.830706	1105.64686	0.070138	3.8845E-05	-1.4657	-0.00081177	-1.3956	-0.00077293	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.1307	1	10797	10797		26.693	1.1189	1	5986700			59427	17210	41700	41763	64765	64765					0.09826167305527633
PPRRQGQQP	9	Unmodified	_PPRRQGQQP_					0	0	0		PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2722778320312	2	532.291414	1062.56827	-0.53238	-0.00028338	2.9768	0.0015845	2.4444	0.0013011	532.2927281934359	55.975	0.87847	55.819	55.48	56.358	-0.15601					42	23	3	0	0	0	0.024294	1	6133	6133		45.952	13.14	1	1768200			59428	19004	41701	41764	64766	64766					0.03949315000431852
PPRRQGQQP	9	Unmodified	_PPRRQGQQP_					0	0	0		PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.291414	1062.56827	-0.7689	-0.00040928	-4.517	-0.0024044	-5.2859	-0.0028137	532.2918491578992	56.004	0.76638	55.848	55.607	56.373	-0.15656	-0.012867	-0.0077339	NaN	53.351	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321210			59429	19004	41701	41764							0.03949315000431852
PPRRQGQQP	9	Unmodified	_PPRRQGQQP_					0	0	0		PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	PTCH1|p.G1296R|1|0.15|ENSG00000185920|chr9:95447370-95447370|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.291414	1062.56827	-1.2684	-0.00067514	5.9971	0.0031922	4.7288	0.0025171	532.2937249603337	56.064	0.56131	55.849	55.637	56.198	-0.21551	-0.01175	0.0034593	NaN	53.351	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297330			59430	19004	41701	41764							0.03949315000431852
PPRRQIWGKT	10	Unmodified	_PPRRQIWGKT_					0	0	0			REV__ENST00000402966.1_1_22:42092686-42092746:+|nuORF	REV__ENST00000402966.1_1_22:42092686-42092746:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2145690917969	3	413.575401	1237.70437	0.13061	5.4015E-05	-2.9965	-0.0012393	-2.8659	-0.0011853	413.57394873547696	23.917	0.5834	23.994	23.734	24.317	0.076239					15	12	2	0	0	0	0.03519	1	971	971		19.263	3.342	1	36228	+		59431	31881	41702	41765	64767	64767					0.09503009511081473
PPRRQVLPGAS	11	Unmodified	_PPRRQVLPGAS_					0	0	0		ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3430786132812	2	589.343646	1176.67274	-2.3876	-0.0014071	1.117	0.00065827	-1.2707	-0.00074887	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0292	2	11346	11346;11614		30.318	0	1	4758600			59432	14734	41703	41766	64768;64769	64768					0.09147016757151505
PPRRQVLPGAS	11	Unmodified	_PPRRQVLPGAS_					0	0	0		ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3428344726562	2	589.343646	1176.67274	-1.3447	-0.00079247	-0.0816	-4.809E-05	-1.4263	-0.00084056	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0238	3	11675	11675;11844;12030		31.53	1.1477	1	13724000			59433	14734	41703	41766	64770;64771;64772	64770					0.09147016757151505
PPRRQVLPGAS	11	Unmodified	_PPRRQVLPGAS_					0	0	0		ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.343646	1176.67274	-1.6034	-0.00094497	0.25779	0.00015193	-1.3456	-0.00079304	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.013	1	11222	11222		33.922	2.2874	1	5827400			59434	14734	41703	41766	64773	64773					0.09147016757151505
PPRRQVLPGAS	11	Unmodified	_PPRRQVLPGAS_					0	0	0		ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0292	2	11497	11366;11497		30.318	1.2878	1	15816000			59435	14734	41703	41766	64774;64775	64775					0.09147016757151505
PPRRQVLPGAS	11	Unmodified	_PPRRQVLPGAS_					0	0	0		ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.343017578125	2	589.343646	1176.67274	-1.3212	-0.00077864	0.069689	4.1071E-05	-1.2515	-0.00073757	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.013	2	11261	11248;11261		33.922	2.5316	1	5175100			59436	14734	41703	41766	64776;64777	64777					0.09147016757151505
PPRRQVLPGAS	11	Unmodified	_PPRRQVLPGAS_					0	0	0		ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	ENST00000463472.1_1_22:50969078-50969831:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3434448242188	2	589.343646	1176.67274	-0.57069	-0.00033633	-0.8775	-0.00051715	-1.4482	-0.00085348	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	0.99553	4	11270	11270;11341;11400;11619		37.812	10.764	1	17343000			59437	14734	41703	41766	64778;64779;64780;64781	64778					0.09147016757151505
PPRRSVPALFV	11	Unmodified	_PPRRSVPALFV_					0	0	0			REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8684692382812	2	619.87204	1237.72953	-0.47108	-0.00029201	-3.6909	-0.0022879	-4.162	-0.0025799	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.0521	1	11550	11550		24.519	1.4767	1	4765600	+		59438	33514	41704	41767	64782	64782					0.12017064313636183
PPRSLQTR	8	Unmodified	_PPRSLQTR_					0	0	0			REV__SYT15|p.L91Cfs*78|1|0.31|ENSG00000204176|chr10:46580949-46580949|C/-|frameshift_variant	REV__SYT15|p.L91Cfs*78|1|0.31|ENSG00000204176|chr10:46580949-46580949|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.30560302734375	2	477.777608	953.540663	0.51635	0.0002467	-1.2715	-0.00060751	-0.75518	-0.00036081	477.7766630120547	19.13	0.6424	18.927	18.51	19.152	-0.20371					23	12	3	0	0	0	0.027866	1	337	337		34.173	8.7224	1	84820	+		59439	28571	41705	41768	64783	64783					0.062034117401822186
PPRSQGCPE	9	Unmodified	_PPRSQGCPE_					0	0	0			REV__ENSG00000129749|ENST00000250699|CHRNA10	REV__ENSG00000129749|ENST00000250699|CHRNA10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7767639160156	2	485.724184	969.433814	-1.0975	-0.00053307	-4.1216	-0.0020019	-5.219	-0.002535	485.72199640933087	29.431	0.2355	29.509	29.45	29.685	0.078344					8	5	2	0	0	0	0.024397	1	1756	1756		31.53	9.5699	1	75044	+		59440	23063	41706	41769	64784	64784					-0.05212506536497585
PPRSTPGHASD	11	Unmodified	_PPRSTPGHASD_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2704467773438	2	561.270344	1120.52613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.031	1	25.861	25.361	26.361	-0.1701								0	0	0	1.0562	1	1293	1293		40.058	1.252	1		+		59441	29056	41707	41770	64785	64785					-0.029307051986279475
PPRTGEPLPR	10	Unmodified	_PPRTGEPLPR_					0	0	0			REV__ENST00000464728.5_1_16:838721-840735:+|nuORF	REV__ENST00000464728.5_1_16:838721-840735:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3171997070312	2	560.317097	1118.61964	-0.26369	-0.00014775	-0.45498	-0.00025493	-0.71868	-0.00040269	560.3167984893639	47.429	0.80977	47.332	47.046	47.856	-0.096653					65	21	5	0	0	0	0.91678	1	4627	4627		52.937	0	1	5743400	+		59442	32985	41708	41771	64786	64786					0.06507638974449037
PPRVRSGG	8	Unmodified	_PPRVRSGG_					0	0	0			REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2377624511719	2	413.238119	824.461684	-0.035551	-1.4691E-05	0.35429	0.00014641	0.31874	0.00013172	413.2381660612718	76.315	4.9174	76.047	73.925	78.842	-0.26806					200	118	3	0	0	0	1.043	2	9035	9035;9101		30.504	7.4612	1	1178700	+		59443	33094	41709	41772	64787;64788	64787					0.04243184505912723
PPRVRSGG	8	Unmodified	_PPRVRSGG_					0	0	0			REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	REV__ENST00000468090.5_1_21:45179541-45179850:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.23736572265625	2	413.238119	824.461684	0.064625	2.6705E-05	0.20368	8.4168E-05	0.2683	0.00011087	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	1.043	1	9057	9057		30.504	10.022	1	908900	+		59444	33094	41709	41772	64789	64789					0.04243184505912723
PPRVSLPPP	9	Unmodified	_PPRVSLPPP_					0	0	0			REV__ENST00000579224.5_1_17:17991293-17991350:+|nuORF	REV__ENST00000579224.5_1_17:17991293-17991350:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.76788330078125	2	480.287277	958.560001	-0.54157	-0.00026011	0.42567	0.00020445	-0.11589	-5.5662E-05	480.28741134622345	36.434	0.65047	36.472	36.234	36.884	0.038044					37	17	3	0	0	0	0.024405	1	2878	2878		44.117	25.792	1	434310	+		59445	35502	41710	41773	64790	64790					0.07906368031081001
PPSAILTL	8	Unmodified	_PPSAILTL_					0	0	0			REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.24847412109375	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0574	1	11097	11097		26.796	0	1	123310000	+		59446	21343	41711	41774	64791	64791					0.07228185499855044
PPSAILTL	8	Unmodified	_PPSAILTL_					0	0	0			REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2483825683594	2	406.249829	810.485105	0.91381	0.00037124	-4.0137	-0.0016306	-3.0999	-0.0012593	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0574	1	10673	10673		26.796	0	1	86727000	+		59447	21343	41711	41774	64792	64792					0.07228185499855044
PPSARGSGNF	10	Unmodified	_PPSARGSGNF_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.72271728515625	2	495.243598	988.472643	-0.11231	-5.562E-05	-1.1966	-0.0005926	-1.3089	-0.00064822	495.2429348486541	47.89	0.75103	47.89	47.56	48.311	0					29	22	2	0	0	0	0.03519	1	4798	4798		56.721	16.148	1	526930	+		59448	20095	41712	41775	64793	64793					-0.022054579104633376
PPSARRAP	8	Unmodified	_PPSARRAP_					0	0	0		ENST00000462059.1_1_8:144660029-144660488:-|nuORF	ENST00000462059.1_1_8:144660029-144660488:-|nuORF	ENST00000462059.1_1_8:144660029-144660488:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2471008300781	2	426.245944	850.477334	0.47902	0.00020418	1.0764	0.00045881	1.5554	0.00066299	426.24709055663897	103.18	0.63659	103.18	102.94	103.58	-0.0046005					39	14	4	0	0	0	1.043	1	13154	13154		30.504	1.3541	1	852770			59449	14697	41713	41776	64794	64794					0.0461147102294035
PPSASRRRRR	10	Unmodified	_PPSASRRRRR_					0	0	0			REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	REV__SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.869140625	2	619.868686	1237.72282	-0.39229	-0.00024317	1.5366	0.00095248	1.1443	0.00070931	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.1088	1	12004	12004		31.53	0	1	4658300	+		59450	22896	41714	41777	64795	64795					0.11346564205632603
PPSDDFMPI	9	Unmodified	_PPSDDFMPI_					0	0	0			REV__nc|ENSG00000136754|Q8IZP0-10|ABI1	REV__nc|ENSG00000136754|Q8IZP0-10|ABI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8036193847656	2	509.731143	1017.44773	-0.63913	-0.00032578	-1.4543	-0.00074128	-2.0934	-0.0010671	509.72994493971925	85.009	0.32982	85.035	84.829	85.159	0.025528					12	7	2	0	0	0	0.024487	1	10549	10549		40.573	16.37	1	49470	+		59451	23680	41715	41778	64796	64796					-0.06029273828073656
PPSDSSQDSC	10	Unmodified	_PPSDSSQDSC_					0	0	0			REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7713928222656	2	511.690204	1021.36585	-0.68586	-0.00035095	2.1203	0.001085	1.4345	0.00073401	511.6912359783683	84.656	0.49641	84.584	84.427	84.924	-0.072769					17	11	2	0	0	0	0.03519	1	10558	10558		14.137	1.3254	1	75409	+		59452	20810	41716	41779	64797	64797					-0.1439742097782073
PPSETHKL	8	Unmodified	_PPSETHKL_					0	0	0		ENSG00000126458|ENST00000246792|RRAS	ENSG00000126458|ENST00000246792|RRAS	ENSG00000126458|ENST00000246792|RRAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7449951171875	2	454.745442	907.476331	0.059719	2.7157E-05	-1.482	-0.00067391	-1.4222	-0.00064675	454.744685532615	101.18	1.8063	101.19	100.7	102.5	0.0090332					106	41	5	0	0	0	1.0574	1	12889	12889		25.45	1.2474	1	4694600			59453	4200	41717	41780	64798	64798					0.01889211863363016
PPSFLPPTGP	10	Unmodified	_PPSFLPPTGP_					0	0	0			REV__ENSG00000127152|ENST00000357195|BCL11B	REV__ENSG00000127152|ENST00000357195|BCL11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2978210449219	2	505.271293	1008.52803	-0.95641	-0.00048325	2.074	0.0010479	1.1175	0.00056466	505.7733111848935	62.008	0.35028	61.831	61.691	62.042	-0.17782					13	8	2	0	0	0	0.03519	1	6962	6962		42.396	16.822	1	680280	+		59454	22920	41718	41781	64799	64799					0.024109555572863428
PPSGADTAVLL	11	Unmodified	_PPSGADTAVLL_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	520.7861938476562	2	520.784764	1039.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.27	1	107.27	106.77	107.77	0								0	0	0	1.0659	1	13780	13780		39.253	6.4404	1		+		59455	19655	41719	41782	64800	64800					0.03678019377821329
PPSGAQFTR	9	Unmodified	_PPSGAQFTR_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2324523925781	2	480.748516	959.482479	0.10396	4.9978E-05	-1.5501	-0.00074522	-1.4462	-0.00069524	480.7495032239826	30.897	0.29539	30.745	30.511	30.806	-0.15231					10	6	2	0	0	0	0.024457	1	1990	1990		21.96	0	1	27582	+		59456	24691	41720	41783	64801	64801					0.0011173009489766628
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.86962890625	2	619.870028	1237.7255	-0.39229	-0.00024317	-0.62947	-0.00039019	-1.0218	-0.00063336	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	0.99689	2	12051	12051;12156		37.508	1.0614	1	4658300			59457	11011	41721	41784	64802;64803	64802					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8698120117188	2	619.870028	1237.7255	-0.20812	-0.00012901	-0.94274	-0.00058438	-1.1509	-0.00071338	619.869248531336	92.303	2.2444	92.294	91.12	93.364	-0.0082855					173	53	4	0	0	0	1.0624	1	11718	11718		21.686	0.73882	1	1362300			59458	11011	41721	41784	64804	64804					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8697509765625	2	619.870028	1237.7255	-1.0156	-0.00062956	0.033515	2.0775E-05	-0.98212	-0.00060879	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	0.95664	1	11983	11983		46.457	7.6506	1	4459000			59459	11011	41721	41784	64805	64805					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8700561523438	2	619.870028	1237.7255	-0.66003	-0.00040914	-0.31019	-0.00019228	-0.97023	-0.00060142	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0183	1	11744	11744		32.751	2.2469	1	5229800			59460	11011	41721	41784	64806	64806					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8687133789062	2	619.870028	1237.7255	-0.98359	-0.0006097	-0.34317	-0.00021272	-1.3268	-0.00082242	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	0.99553	1	11352	11352		37.812	7.4938	1	1625000			59461	11011	41721	41784	64807	64807					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8693237304688	2	619.870028	1237.7255	-0.47108	-0.00029201	-0.44611	-0.00027653	-0.91719	-0.00056854	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.0281	2	11515	11515;11953		30.569	3.5215	1	4765600			59462	11011	41721	41784	64808;64809	64808					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.86962890625	2	619.870028	1237.7255	-0.13269	-8.2249E-05	-0.82013	-0.00050837	-0.95281	-0.00059062	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	0.96926	2	11755	11755;11817		43.651	12.121	1	4730400			59463	11011	41721	41784	64810;64811	64810					0.11614974819917734
PPSIPGYVAF	10	Unmodified	_PPSIPGYVAF_					0	0	0		ENST00000546020.2_3_17:8172159-8172579:+|nuORF	ENST00000546020.2_3_17:8172159-8172579:+|nuORF	ENST00000546020.2_3_17:8172159-8172579:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3171997070312	2	524.279118	1046.54368	1.1876	0.00062265	-4.1214	-0.0021608	-2.9337	-0.0015381	524.2767674597334	17.19	0.35235	17.036	16.907	17.259	-0.15403					11	6	3	0	0	0	0.03519	1	157	157		30.504	2.4222	1	40423			59464	16504	41722	41785	64812	64812					0.02227242074309288
PPSKPVTV	8	Unmodified	_PPSKPVTV_					0	0	0			REV__ENSG00000095370|ENST00000314830|SH2D3C	REV__ENSG00000095370|ENST00000314830|SH2D3C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.74615478515625	2	412.747453	823.480354	0.7645	0.00031555	-3.8759	-0.0015998	-3.1114	-0.0012842	412.7457683107616	84.583	1.9803	84.424	83.671	85.651	-0.15869					114	46	4	0	0	0	1.0574	1	10222	10222		24.203	4.8428	1	6553300	+		59465	20963	41723	41786	64813	64813					0.061553013571028714
PPSLALIN	8	Unmodified	_PPSLALIN_					0	0	0			REV__nc|ENSG00000177628|P04062-4|GBA1	REV__nc|ENSG00000177628|P04062-4|GBA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.74627685546875	2	412.747453	823.480354	0.53661	0.00022148	-3.6343	-0.0015	-3.0976	-0.0012785	412.7458595051266	84.56	2.4958	84.357	83.567	86.063	-0.20329					121	58	4	0	0	0	1.0574	1	10258	10258		25.45	1.2474	1	8025800	+		59466	27131	41724	41787	64814	64814					0.061553013571028714
PPSLALIN	8	Unmodified	_PPSLALIN_					0	0	0			REV__nc|ENSG00000177628|P04062-4|GBA1	REV__nc|ENSG00000177628|P04062-4|GBA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.15081787109375	2	412.747453	823.480354	0.40084	0.00016544	-3.3175	-0.0013693	-2.9166	-0.0012038	412.7459596062169	81.722	1.0197	81.493	81.188	82.208	-0.2289					41	23	3	0	0	0	0.027866	1	9788	9788		31.955	8.9124	1	455230	+		59467	27131	41724	41787	64815	64815					0.061553013571028714
PPSLGLEI	8	Unmodified	_PPSLGLEI_					0	0	0		ENST00000593362.1_1_19:49912247-49918391:+|nuORF;ENSG00000161609|ENST00000447857|KASH5	ENST00000593362.1_1_19:49912247-49918391:+|nuORF	ENST00000593362.1_1_19:49912247-49918391:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.23724365234375	2	413.239461	824.46437	0.092707	3.831E-05	-3.0236	-0.0012495	-2.9309	-0.0012111	413.23811756919946	76.351	3.9324	76.183	74.993	78.925	-0.16853					174	94	3	0	0	0	1.0572	1	9095	9095		28.254	0	1	809840			59468	17389	41725	41788	64816	64816					0.04511595120175116
PPSLIGIQTD	10	Unmodified	_PPSLIGIQTD_					0	0	0		nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3;ENST00000526255.1_1_1:211485798-211487107:+|nuORF	nc|ENSG00000117625|Q9P2K3|RCOR3	nc|ENSG00000117625|Q9P2K3|RCOR3	MSMS	OPSCC_40_ClassI_Rep-1	4	520.7843627929688	2	520.784764	1039.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	107.35	106.85	107.85	-0.1238								0	0	0	0.74882	1	13364	13364		30.318	2.4355	1				59469	3648	41726	41789	64817	64817					0.036780193777985914
PPSLPTVVKNV	11	Unmodified	_PPSLPTVVKNV_					0	0	0			REV__nc|ENSG00000115414|P02751-12|FN1	REV__nc|ENSG00000115414|P02751-12|FN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8434448242188	2	575.845156	1149.67576	-0.26488	-0.00015253	-3.539	-0.0020379	-3.8039	-0.0021904	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0344	1	11452	11452		29.17	3.596	1	4946400	+		59470	22201	41727	41790	64818	64818					0.10690847091291289
PPSLQGVRYVD	11	Unmodified	_PPSLQGVRYVD_					0	0	0		ENST00000525250.5_1_11:821680-823850:+|nuORF;ENSG00000177666|ENST00000336615|PNPLA2	ENST00000525250.5_1_11:821680-823850:+|nuORF	ENST00000525250.5_1_11:821680-823850:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.82666015625	2	615.827495	1229.64044	-0.70345	-0.0004332	0.79038	0.00048674	0.086934	5.3536E-05	615.8279169188987	50.771	0.91378	50.771	50.445	51.359	0					76	25	4	0	0	0	0.51994	1	5369	5369		75.043	16.261	1	4463800			59471	8760	41728	41791	64819	64819					0.034801845634547135
PPSLSGLALPE	11	Unmodified	_PPSLSGLALPE_					0	0	0			REV__ENST00000265343.9_1_5:132299023-132299215:-|nuORF	REV__ENST00000265343.9_1_5:132299023-132299215:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.8313598632812	2	540.800414	1079.58628	-1.1856	-0.00064119	3.4489	0.0018652	2.2632	0.001224	540.8023003541513	93.766	0.2065	93.772	93.604	93.811	0.0059814					5	4	2	0	0	0	0.024735	1	11816	11816		19.997	6.2214	1	110970	+		59472	29737	41729	41792	64820	64820					0.04966592411892634
PPSLSLCETE	10	Unmodified	_PPSLSLCETE_					0	0	0			REV__ENST00000314891.10_1_15:34651206-34652316:-|nuORF	REV__ENST00000314891.10_1_15:34651206-34652316:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2777709960938	2	538.25244	1074.49033	-0.19922	-0.00010723	1.8078	0.00097305	1.6086	0.00086582	538.253942626329	84.567	0.28802	84.567	84.504	84.792	0					10	6	2	0	0	0	0.03519	1	10604	10604		21.96	0	1	231990	+		59473	30251	41730	41793	64821	64821					-0.04393923490488305
PPSMVVQKP	9	Unmodified	_PPSMVVQKP_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.3109436035156	2	491.773145	981.531738	-0.57829	-0.00028439	-2.0692	-0.0010176	-2.6474	-0.0013019	491.771775985004	61.872	0.43557	61.658	61.416	61.852	-0.21375					15	10	2	0	0	0	0.024294	1	6961	6961		37.159	0	1	243790			59474	2030	41731	41794	64822	64822					0.04023302059499656
PPSNSTRLPE	10	Unmodified	_PPSNSTRLPE_					0	0	0		ENST00000497613.2_1_8:145658938-145666334:-|nuORF;ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2866821289062	2	549.28292	1096.55129	-0.5245	-0.0002881	2.1729	0.0011935	1.6484	0.00090543	549.2839171336144	76.98	0.37228	76.811	76.567	76.939	-0.16854					10	8	2	0	0	0	0.03519	1	9131	9131		32.812	0	1	63820			59475	6851	41732	41795	64823	64823					0.006873496039361271
PPSNVTLH	8	Unmodified	_PPSNVTLH_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.7320556640625	2	432.732335	863.450116	0.94554	0.00040916	-2.2002	-0.00095211	-1.2547	-0.00054294	432.7313165592402	98.51	1.8019	98.507	97.893	99.695	-0.0026855					100	41	3	0	0	0	1.0338	1	12544	12544		31.955	1.4512	1	3032200	+		59476	20753	41733	41796	64824	64824					0.012929426919072284
PPSNVTLH	8	Unmodified	_PPSNVTLH_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7319030761719	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	1.0338	2	12247	12247;12280		31.955	6.5047	1	2327700	+		59477	20753	41733	41796	64825;64826	64825					0.012929426919072284
PPSNVTLH	8	Unmodified	_PPSNVTLH_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7318420410156	2	432.732335	863.450116	1.1632	0.00050335	-1.9665	-0.00085099	-0.80336	-0.00034764	432.7312915054073	99.078	2.4922	98.954	97.371	99.863	-0.12459					146	62	4	0	0	0	0.94517	1	12323	12323		45.952	12.436	1	1722000	+		59478	20753	41733	41796	64827	64827					0.012929426919072284
PPSPFSRPR	9	Unmodified	_PPSPFSRPR_					0	0	0			REV__ENST00000563484.1_1_16:89971421-89975542:+|nuORF	REV__ENST00000563484.1_1_16:89971421-89975542:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7842407226562	2	520.785433	1039.55631	0.7045	0.00036689	-3.1524	-0.0016417	-2.4479	-0.0012748	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	0.85329	1	13258	13258		35.618	6.4687	1	3641400	+		59479	35228	41734	41797	64828	64828					0.0381169825723191
PPSPLLPGRL	10	Unmodified	_PPSPLLPGRL_					0	0	0		ENST00000323303.8_1_2:198380622-198380796:+|nuORF	ENST00000323303.8_1_2:198380622-198380796:+|nuORF	ENST00000323303.8_1_2:198380622-198380796:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.8228149414062	2	523.821484	1045.62842	2.6902	0.0014092	0.47225	0.00024738	3.1624	0.0016566	523.8215583736372	18.741	0.64468	18.499	18.274	18.919	-0.24256					27	12	3	0	0	0	1.0992	1	329	329		32.812	9.2897	1	372260			59480	12237	41735	41798	64829	64829					0.1074261261094307
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8167114257812	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.88896	3	10979	10917;10929;10979		54.776	6.8168	1	3741200	+		59481	31364	41736	41799	64830;64831;64832	64832					0.09498308748334239
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8168334960938	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.98754	3	10925	10925;11033;11092		47.657	6.8792	1	3781500	+		59482	31364	41736	41799	64833;64834;64835	64833					0.09498308748334239
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167724609375	2	531.818941	1061.62333	0.17298	9.1995E-05	-4.1238	-0.0021931	-3.9509	-0.0021011	531.8166531068138	85.355	2.6332	85.16	83.7	86.333	-0.19508					190	61	4	0	0	0	1.0002	1	10346	10346		45.972	5.1941	1	1282000	+		59483	31364	41736	41799	64836	64836					0.09498308748334239
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.81640625	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.91678	6	10664	10534;10545;10581;10592;10664;10713		52.937	12.159	1	5249700	+		59484	31364	41736	41799	64837;64838;64839;64840;64841;64842	64841					0.09498308748334239
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.816162109375	2	531.818941	1061.62333	0.26844	0.00014276	-4.3102	-0.0022922	-4.0418	-0.0021495	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.86389	2	10378	10343;10378		56.434	8.5182	1	1303400	+		59485	31364	41736	41799	64843;64844	64844					0.09498308748334239
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8167724609375	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.94316	2	10559	10559;10738		51.193	15.574	1	4853400	+		59486	31364	41736	41799	64845;64846	64845					0.09498308748334239
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8170776367188	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.94316	3	10688	10688;10700;10772		51.193	17.02	1	4521600	+		59487	31364	41736	41799	64847;64848;64849	64847					0.09498308748334239
PPSPLVPRLS	10	Unmodified	_PPSPLVPRLS_					0	0	0			REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	REV__ENST00000489942.1_1_6:3155224-3157697:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8169555664062	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.0719	1	10531	10531		36.447	3.6343	1	4521600	+		59488	33688	41737	41800	64850	64850					0.09498308748334239
PPSPSLVLRP	10	Unmodified	_PPSPSLVLRP_					0	0	0			REV__ENST00000295920.7_1_3:155588489-155621652:+|nuORF	REV__ENST00000295920.7_1_3:155588489-155621652:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165283203125	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.089	1	10567	10567		34.173	5.023	1	4521600	+		59489	29986	41738	41801	64851	64851					0.09498308748334239
PPSRFRAGCA	10	Unmodified	_PPSRFRAGCA_					0	0	0		ENST00000392779.6_1_3:160821289-160823116:-|nuORF	ENST00000392779.6_1_3:160821289-160823116:-|nuORF	ENST00000392779.6_1_3:160821289-160823116:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2924194335938	2	531.269093	1060.52363	-0.99339	-0.00052776	-4.133	-0.0021957	-5.1263	-0.0027235	531.2666600557964	29.238	1.0239	29.065	28.594	29.618	-0.17258					36	23	2	0	0	0	0.03519	1	1846	1846		27.882	1.1893	1	66190			59490	13424	41739	41802	64852	64852					-0.00420832137274374
PPSRGPRDSI	10	Unmodified	_PPSRGPRDSI_					0	0	0		nc|ENSG00000132470|P16144-3|ITGB4	nc|ENSG00000132470|P16144-3|ITGB4	nc|ENSG00000132470|P16144-3|ITGB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8033447265625	2	541.291079	1080.56761	0.38506	0.00020843	2.0543	0.0011119	2.4393	0.0013204	541.291806954428	96.458	0.73404	96.46	96.194	96.928	0.0020752					40	16	3	0	0	0	0.03519	1	12205	12205		27.047	0	1	162950			59491	18274	41740	41803	64853	64853					0.030544755607252227
PPSRLACHVA	10	Unmodified	_PPSRLACHVA_					0	0	0			REV__ENSG00000053371|ENST00000235835|AKR7A2	REV__ENSG00000053371|ENST00000235835|AKR7A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.7464599609375	2	525.779293	1049.54403	-0.5923	-0.00031142	-0.089908	-4.7272E-05	-0.68221	-0.00035869	525.779169340515	31.928	0.52087	31.94	31.583	32.104	0.011797					20	12	2	0	0	0	0.03519	1	2108	2108		32.812	0	1	63083	+		59492	20180	41741	41804	64854	64854					0.02124338522526159
PPSRLACHVA	10	Unmodified	_PPSRLACHVA_					0	0	0			REV__ENSG00000053371|ENST00000235835|AKR7A2	REV__ENSG00000053371|ENST00000235835|AKR7A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.779293	1049.54403	-0.21926	-0.00011528	-0.94019	-0.00049433	-1.1595	-0.00060962	525.7788755694262	31.669	0.60566	31.738	31.445	32.051	0.068962	-0.1643	0.0010515	NaN	32.812	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65570	+		59493	20180	41741	41804							0.02124338522526159
PPSRLACHVA	10	Unmodified	_PPSRLACHVA_					0	0	0			REV__ENSG00000053371|ENST00000235835|AKR7A2	REV__ENSG00000053371|ENST00000235835|AKR7A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.779293	1049.54403	-0.18027	-9.478E-05	-2.4065	-0.0012653	-2.5868	-0.0013601	525.7779946196933	32.199	0.84925	31.962	31.489	32.339	-0.23667	0.059883	-0.00049041	NaN	32.812	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310010	+		59494	20180	41741	41804							0.02124338522526159
PPSRLACHVA	10	Unmodified	_PPSRLACHVA_					0	0	0			REV__ENSG00000053371|ENST00000235835|AKR7A2	REV__ENSG00000053371|ENST00000235835|AKR7A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.779293	1049.54403	-0.29111	-0.00015306	-2.4063	-0.0012652	-2.6974	-0.0014183	525.777928992921	32.127	0.75557	31.969	31.529	32.284	-0.15772	0.066834	-0.00049019	NaN	32.812	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342300	+		59495	20180	41741	41804							0.02124338522526159
PPSRLPAAPL	10	Unmodified	_PPSRLPAAPL_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8036804199219	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	1.0992	1	10597	10597		32.812	2.9709	1	2572600	+		59496	36750	41742	41805	64855	64855					0.08902039576844345
PPSSFMAHGF	10	Unmodified	_PPSSFMAHGF_					0	0	0		MS4A12|p.P28H|1|0.23|ENSG00000071203|chr11:60497401-60497401|C/A|missense_variant	MS4A12|p.P28H|1|0.23|ENSG00000071203|chr11:60497401-60497401|C/A|missense_variant	MS4A12|p.P28H|1|0.23|ENSG00000071203|chr11:60497401-60497401|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7987060546875	2	539.244752	1076.47495	4.6096	0.0024857	4.2169	0.0022739	8.8264	0.0047596	539.24715785457	17.217	0.19506	17.277	17.127	17.323	0.06036					8	5	2	0	0	0	0.03519	1	114	114		17.365	2.7009	1	10562			59497	17995	41743	41806	64856	64856					-0.06022745497011783
PPSSFMAHGF	10	Unmodified	_PPSSFMAHGF_					0	0	0		MS4A12|p.P28H|1|0.23|ENSG00000071203|chr11:60497401-60497401|C/A|missense_variant	MS4A12|p.P28H|1|0.23|ENSG00000071203|chr11:60497401-60497401|C/A|missense_variant	MS4A12|p.P28H|1|0.23|ENSG00000071203|chr11:60497401-60497401|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.244752	1076.47495	-0.062619	-3.3767E-05	10.645	0.0057402	10.582	0.0057064	539.2505949158432	17.252	0.15709	17.109	16.977	17.134	-0.14278	-0.083789	0.0054882	NaN	23.042	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13962			59498	17995	41743	41806							-0.06022745497011783
PPSSHIIQHL	10	Unmodified	_PPSSHIIQHL_					0	0	0			REV__MAPK7|p.Q152Pfs*30|1|0.06|ENSG00000166484|chr17:19380664-19380665|AG/-|frameshift_variant	REV__MAPK7|p.Q152Pfs*30|1|0.06|ENSG00000166484|chr17:19380664-19380665|AG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8101196289062	2	564.811648	1127.60874	-0.13202	-7.4567E-05	-1.7474	-0.00098694	-1.8794	-0.0010615	564.810518618915	108.37	0.44119	108.36	108.13	108.57	-0.0056458					68	22	4	0	0	0	1.1286	1	13810	13810		25.574	0.44807	1	5828300	+		59499	36355	41744	41807	64857	64857					0.050042366001889604
PPSSHQVI	8	Unmodified	_PPSSHQVI_					0	0	0			REV__ENSG00000131126|ENST00000598265|TEX101	REV__ENSG00000131126|ENST00000598265|TEX101	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7319641113281	2	432.732335	863.450116	1.1632	0.00050335	-1.9665	-0.00085099	-0.80336	-0.00034764	432.7312915054073	99.078	2.4922	98.954	97.371	99.863	-0.12459					146	62	4	0	0	0	0.94517	1	12274	12274		45.952	3.4775	1	1722000	+		59500	23190	41745	41808	64858	64858					0.012929426919072284
PPSSPLPI	8	Unmodified	_PPSSPLPI_					0	0	0		ENST00000577684.1_1_17:18314705-18315443:+|nuORF	ENST00000577684.1_1_17:18314705-18315443:+|nuORF	ENST00000577684.1_1_17:18314705-18315443:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2330627441406	2	404.234179	806.453805	0.2566	0.00010373	-4.2648	-0.001724	-4.0082	-0.0016203	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0572	1	10230	10230		28.254	0	1	12775000			59501	17119	41746	41809	64859	64859					0.04283612465758324
PPSSSPKIPS	10	Unmodified	_PPSSSPKIPS_					0	0	0		ENST00000508892.5_1_17:48190259-48195083:-|nuORF;ENSG00000167100|ENST00000330175|SAMD14;nc|ENSG00000167100|Q8IZD0-2|SAMD14	ENST00000508892.5_1_17:48190259-48195083:-|nuORF	ENST00000508892.5_1_17:48190259-48195083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.77105712890625	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	1.0992	1	13077	13077		32.812	2.3088	1	3882100			59502	7648	41747	41810	64860	64860					0.030817502063428037
PPSSVQLFI	9	Unmodified	_PPSSVQLFI_					0	0	0			REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2601318359375	2	494.279118	986.543683	-0.76197	-0.00037662	1.2308	0.00060835	0.46881	0.00023172	494.2795957446704	83.305	0.63946	83.332	83.088	83.727	0.026558					20	14	2	0	0	0	0.024381	1	10310	10310		45.952	31.087	1	82442	+		59503	35197	41748	41811	64861	64861					0.049872420743326984
PPSTRSSF	8	Unmodified	_PPSTRSSF_					0	0	0		ENSG00000146373|ENST00000521654|RNF217	ENSG00000146373|ENST00000521654|RNF217	ENSG00000146373|ENST00000521654|RNF217	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.7217102050781	2	439.721967	877.429381	0.18623	8.1889E-05	-1.3476	-0.00059256	-1.1613	-0.00051067	439.72132243225815	101.68	0.89462	101.55	101.13	102.03	-0.13157					40	20	3	0	0	0	1.0009	1	12624	12624		37.159	6.6555	1	240910			59504	5874	41749	41812	64862	64862					-0.014236476877613313
PPSTSMPSVH	10	Unmodified	_PPSTSMPSVH_					0	0	0		ENST00000590555.5_1_17:74534445-74534577:+|nuORF	ENST00000590555.5_1_17:74534445-74534577:+|nuORF	ENST00000590555.5_1_17:74534445-74534577:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8192749023438	2	520.247492	1038.48043	-0.78515	-0.00040847	3.727	0.0019389	2.9418	0.0015305	520.2492586042849	38.369	0.42546	38.287	38.182	38.607	-0.082512					12	10	2	0	0	0	0.03519	1	3223	3223		21.96	5.4867	1	50509			59505	17336	41750	41813	64863	64863					-0.03727066705209836
PPSTWRPTC	9	Unmodified	_PPSTWRPTC_					0	0	0		ENST00000409851.7_1_2:99136554-99137182:+|nuORF	ENST00000409851.7_1_2:99136554-99137182:+|nuORF	ENST00000409851.7_1_2:99136554-99137182:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7525024414062	2	522.750201	1043.48585	5.1915	0.0027139	1.6504	0.00086276	6.8419	0.0035766	522.7508982868869	17.141	0.37072	17.201	16.982	17.353	0.06036					24	12	3	0	0	0	0.98697	1	102	102		23.042	3.939	1	87414			59506	13793	41751	41814	64864	64864					-0.03415343122719605
PPTALFHPM	9	Unmodified	_PPTALFHPM_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7608642578125	2	505.760038	1009.50552	0.68316	0.00034551	0.06188	3.1297E-05	0.74504	0.00037681	505.7600834624134	106.73	0.59353	106.73	106.39	106.98	0					46	19	3	0	0	0	0.88411	1	13707	13707		33.516	0	1	386600			59507	1229	41752	41815	64865	64865					0.0011503288801577582
PPTALFHPM	9	Unmodified	_PPTALFHPM_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.7608947753906	2	505.760038	1009.50552	-0.010776	-5.4499E-06	0.46057	0.00023294	0.4498	0.00022749	505.76053150486666	106.76	0.69756	106.76	106.33	107.03	-0.003479					38	22	2	0	0	0	0.96855	1	13651	13651		26.796	1.3459	1	269380			59508	1229	41752	41815	64866	64866					0.0011503288801577582
PPTGLLEHLI	10	Unmodified	_PPTGLLEHLI_					0	0	0			REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|39|1|anti-sense	REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|39|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3169555664062	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.9856	1	10919	10919		47.916	5.0513	1	3635800	+		59509	37595	41753	41816	64867	64867					0.08222889028479585
PPTGLLEHLI	10	Unmodified	_PPTGLLEHLI_					0	0	0			REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|39|1|anti-sense	REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|39|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3169555664062	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.1267	1	11005	11005		29.15	1.2673	1	15621000	+		59510	37595	41753	41816	64868	64868					0.08222889028479585
PPTGLLEHLI	10	Unmodified	_PPTGLLEHLI_					0	0	0			REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|39|1|anti-sense	REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|39|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.0781	1	10596	10596		35.618	4.0885	1	4888900	+		59511	37595	41753	41816	64869	64869					0.08222889028479585
PPTGSPLVQ	9	Unmodified	_PPTGSPLVQ_					0	0	0			REV__nc|ENSG00000144868|Q6UXF1-2|TMEM108	REV__nc|ENSG00000144868|Q6UXF1-2|TMEM108	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.25146484375	2	448.247818	894.481082	-0.51806	-0.00023222	-2.3095	-0.0010352	-2.8275	-0.0012674	448.24661928563387	25.578	0.72046	25.543	25.351	26.072	-0.034395					46	16	5	0	0	0	0.024374	1	1192	1192		32.812	6.1195	1	287890	+		59512	24370	41754	41817	64870	64870					0.02962096006149295
PPTGVPPWAE	10	Unmodified	_PPTGVPPWAE_					0	0	0			REV__ENSG00000180353|ENST00000314583|HCLS1	REV__ENSG00000180353|ENST00000314583|HCLS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.74658203125	2	525.766374	1049.5182	-1.2252	-0.00064419	0.18526	9.7401E-05	-1.04	-0.00054678	525.7663113386288	33.506	3.4274	33.506	31.591	35.018	0					218	89	3	0	0	0	0.03519	1	2137	2137		42.396	21.449	1	1646500	+		59513	27335	41755	41818	64871	64871					-0.004582324481134492
PPTLGHIIEI	10	Unmodified	_PPTLGHIIEI_					0	0	0		ENST00000273221.8_2_3:12940565-12940730:-|nuORF	ENST00000273221.8_2_3:12940565-12940730:-|nuORF	ENST00000273221.8_2_3:12940565-12940730:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3157348632812	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0781	1	11485	11485		35.618	1.4457	1	11601000			59514	11663	41756	41819	64872	64872					0.08222889028479585
PPTPPLPY	8	Unmodified	_PPTPPLPY_					0	0	0			REV__ENST00000378119.8_1_6:24720133-24720250:-|nuORF	REV__ENST00000378119.8_1_6:24720133-24720250:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.7876281738281	2	441.242004	880.469455	-0.34701	-0.00015312	-2.8545	-0.0012595	-3.2016	-0.0014127	441.2398223141868	41.285	0.62675	41.057	40.807	41.434	-0.2278					25	15	3	0	0	0	0.027866	1	3643	3643		28.254	8.2575	1	106590	+		59515	31391	41757	41820	64873	64873					0.024438989828126978
PPTPPPVC	8	Unmodified	_PPTPPPVC_					0	0	0			REV__ENST00000403359.7_1_2:48132855-48132912:-|nuORF	REV__ENST00000403359.7_1_2:48132855-48132912:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2332458496094	2	404.207107	806.399661	1.5986	0.00064616	-0.44209	-0.0001787	1.1565	0.00046746	404.2067315532312	84.711	0.37452	84.552	84.364	84.738	-0.15869					10	8	2	0	0	0	0.027866	1	10233	10233		39.021	0	1	44993	+		59516	31889	41758	41821	64874	64874					-0.011283029574542525
PPTPVSPRLH	10	Unmodified	_PPTPVSPRLH_					0	0	0		ENSG00000131187|ENST00000253496|F12;ENST00000510358.5_1_5:176831194-176831380:-|nuORF;ENST00000502854.5_1_5:176830573-176831380:-|nuORF	ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7984619140625	2	550.81419	1099.61383	2.6103	0.0014378	3.3032	0.0018194	5.9135	0.0032572	550.8159954454591	18.26	0.44175	18.26	17.99	18.431	0					18	8	3	0	0	0	0.03519	1	254	254		40.778	25.142	1	38257			59517	4505	41759	41822	64875	64875					0.06800540462813842
PPTQANPAL	9	Unmodified	_PPTQANPAL_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7445983886719	2	454.745442	907.476331	0.44258	0.00020126	-1.8786	-0.00085427	-1.436	-0.00065301	454.7444987549907	101.14	1.784	101.14	100.7	102.48	0					105	40	5	0	0	0	0.87448	1	12968	12968		34.173	0	1	4485300			59518	9209	41760	41823	64876	64876					0.01889211863363016
PPTRSGPVVGR	11	Unmodified	_PPTRSGPVVGR_					0	0	0			REV__ENST00000446295.1_1_X:47372487-47372766:-|nuORF	REV__ENST00000446295.1_1_X:47372487-47372766:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.7898559570312	2	561.822547	1121.63054	-0.7081	-0.00039782	2.9781	0.0016732	2.2701	0.0012754	561.8240873574465	49.033	0.6118	48.932	48.689	49.301	-0.1008					42	15	3	0	0	0	0.024761	1	4867	4867		20.837	5.9723	1	1019000	+		59519	32627	41761	41824	64877	64877					0.07459041348761275
PPTVLLLV	8	Unmodified	_PPTVLLLV_					0	0	0			REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.74908447265625	2	426.283672	850.552791	0.02639	1.125E-05	-1.0474	-0.00044647	-1.021	-0.00043522	426.2827728771098	25.847	0.2298	25.677	25.542	25.771	-0.17078					8	5	2	0	0	0	0.027866	1	1271	1271		15.636	6.1657	1	41986	+		59520	35924	41762	41825	64878	64878					0.12153635430672693
PPVAPNTQLFS	11	Unmodified	_PPVAPNTQLFS_					0	0	0		nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;ENST00000485361.1_1_3:48668404-48668690:-|nuORF;ENST00000496469.1_1_3:48667303-48668690:-|nuORF;ENST00000489483.5_1_3:48665668-48668656:-|nuORF	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	585.8114013671875	2	585.811313	1169.60807	-0.11875	-6.9567E-05	0.26136	0.00015311	0.14261	8.3543E-05	585.8114029564722	27.545	0.8968	27.626	27.392	28.289	0.081293					58	22	4	0	0	0	0.95664	1	1475	1475		46.457	5.6786	1	4145700			59521	10656	41763	41826	64879	64879					0.030053971604502294
PPVCLKGSL	9	Unmodified	_PPVCLKGSL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2643737792969	2	457.262413	912.510274	0.383	0.00017513	3.8425	0.001757	4.2255	0.0019322	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	0.89441	1	9662	9662		32.812	8.6097	1	4505400			59522	7604	41764	41827	64880	64880					0.05051917030777986
PPVCLKGSL	9	Unmodified	_PPVCLKGSL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2635192871094	2	457.262413	912.510274	0.19667	8.9932E-05	4.032	0.0018437	4.2286	0.0019336	457.2641530854736	78.972	2.3995	78.741	77.586	79.985	-0.23141					139	56	5	0	0	0	0.89441	1	9469	9469		32.812	6.0163	1	1085400			59523	7604	41764	41827	64881	64881					0.05051917030777986
PPVCRYNW	8	Unmodified	_PPVCRYNW_					0	0	0			REV__AluSx_dup50714|chr8:73955623-73955785:+|1.0913177093367623|1e-05|16.74|495.0|11|3|anti-sense	REV__AluSx_dup50714|chr8:73955623-73955785:+|1.0913177093367623|1e-05|16.74|495.0|11|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7485961914062	2	517.747462	1033.48037	-0.78172	-0.00040474	3.2719	0.001694	2.4902	0.0012893	517.7491375890137	35.78	0.43929	35.575	35.346	35.786	-0.20518					26	11	3	0	0	0	0.95417	1	2744	2744		44.531	6.7195	1	2070800	+		59524	19125	41765	41828	64882	64882					-0.03503021914571036
PPVPKPVPVK	10	Unmodified	_PPVPKPVPVK_					0	0	0		sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	sp|P03204|EBNA6_EBVB9Epstein-Barrnuclearantigen6OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA6PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3054809570312	2	529.342052	1056.66955	-0.44028	-0.00023306	-0.51049	-0.00027022	-0.95077	-0.00050328	529.3419879957859	64.274	0.47736	64.047	63.825	64.302	-0.22773					17	11	2	0	0	0	0.03519	1	7315	7315		10.866	0	1	164790			59525	37927	41766	41829	64883	64883					0.14348373650409485
PPVPPTQRCP	10	Unmodified	_PPVPPTQRCP_					0	0	0			REV__ENST00000563051.1_1_16:780419-781044:-|nuORF	REV__ENST00000563051.1_1_16:780419-781044:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3168334960938	2	546.286951	1090.55935	-0.53856	-0.00029421	-3.7065	-0.0020248	-4.2451	-0.002319	546.2846025204658	91.566	0.81848	91.443	91.159	91.978	-0.12341					40	18	3	0	0	0	0.03519	1	11227	11227		35.618	3.6634	1	276840	+		59526	35213	41767	41830	64884	64884					0.017692053197151836
PPVPVPEPEPE	11	Unmodified	_PPVPVPEPEPE_					0	0	0			REV__ENSG00000147100|ENST00000587091|SLC16A2	REV__ENSG00000147100|ENST00000587091|SLC16A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8018188476562	2	593.803154	1185.59175	-0.75176	-0.0004464	-2.0054	-0.0011908	-2.7572	-0.0016372	593.8020284979149	35.892	2.8005	35.675	35.391	38.191	-0.21661					234	75	6	0	0	0	0.93615	1	2769	2769		49.442	3.4693	1	98136000	+		59527	24527	41768	41831	64885	64885					0.006382712037066085
PPVRFAASL	9	Unmodified	_PPVRFAASL_					0	0	0			REV__ENST00000378567.7_1_1:1981937-1982048:+|nuORF	REV__ENST00000378567.7_1_1:1981937-1982048:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.277587890625	2	479.279452	956.544351	0.51465	0.00024666	-4.4703	-0.0021425	-3.9557	-0.0018959	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.87448	1	10378	10378		34.173	3.6689	1	4752300	+		59528	31409	41769	41832	64886	64886					0.0643408151404401
PPVSRRGT	8	Unmodified	_PPVSRRGT_					0	0	0		ENST00000455168.5_1_3:5163995-5164220:+|nuORF	ENST00000455168.5_1_3:5163995-5164220:+|nuORF	ENST00000455168.5_1_3:5163995-5164220:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2513732910156	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.0338	1	9929	9929		31.955	0	1	1708300			59529	14571	41770	41833	64887	64887					0.04839453677391248
PPVSRRGT	8	Unmodified	_PPVSRRGT_					0	0	0		ENST00000455168.5_1_3:5163995-5164220:+|nuORF	ENST00000455168.5_1_3:5163995-5164220:+|nuORF	ENST00000455168.5_1_3:5163995-5164220:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2511901855469	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	1.0516	1	9735	9735		29.15	0	1	1610700			59530	14571	41770	41833	64888	64888					0.04839453677391248
PPVSRRSA	8	Unmodified	_PPVSRRSA_					0	0	0			REV__ENST00000310837.8_1_17:39845180-39847075:+|nuORF	REV__ENST00000310837.8_1_17:39845180-39847075:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2513732910156	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0198	2	9573	9337;9573		34.173	0.65696	1	2292300	+		59531	30195	41771	41834	64889;64890	64890					0.04839453677379879
PPVTAVEI	8	Unmodified	_PPVTAVEI_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.2379455566406	2	413.239461	824.46437	0.37034	0.00015304	-3.0938	-0.0012785	-2.7235	-0.0011255	413.238039410457	75.721	1.9256	75.721	74.914	76.84	0					94	49	3	0	0	0	0.95417	1	9374	9374		44.531	9.3304	1	845760			59532	9552	41772	41835	64891	64891					0.04511595120197853
PPVTAVEI	8	Unmodified	_PPVTAVEI_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2372741699219	2	413.239461	824.46437	-0.035551	-1.4691E-05	-2.8948	-0.0011963	-2.9304	-0.001211	413.2381660612718	76.315	4.9174	76.047	73.925	78.842	-0.26806					200	118	3	0	0	0	0.85409	3	9149	9089;9136;9149		54.765	10.234	1	1178700			59533	9552	41772	41835	64892;64893;64894	64894					0.04511595120197853
PPVTLATLA	9	Unmodified	_PPVTLATLA_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7682800292969	2	441.768386	881.522219	-0.17194	-7.5957E-05	-0.7357	-0.00032501	-0.90764	-0.00040097	441.7681216130439	102.94	1.5731	102.81	102.45	104.03	-0.12783					93	37	5	0	0	0	0.80658	1	12781	12781		38.806	0	1	25733000			59534	5743	41773	41836	64895	64895					0.07671857045613706
PPVTLATLA	9	Unmodified	_PPVTLATLA_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7682189941406	2	441.768386	881.522219	0.61928	0.00027358	-1.6395	-0.00072428	-1.0202	-0.00045071	441.767731371388	103.03	1.3899	102.86	102.5	103.89	-0.17034					84	33	5	0	0	0	0.55828	1	12839	12839		55.504	0	1	21018000			59535	5743	41773	41836	64896	64896					0.07671857045613706
PPVTPTTL	8	Unmodified	_PPVTPTTL_					0	0	0			REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF	REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2372741699219	2	413.239461	824.46437	0.064624	2.6705E-05	-3.0455	-0.0012585	-2.9808	-0.0012318	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	0.95417	1	9158	9158		44.531	7.5026	1	908900	+		59536	34596	41774	41837	64897	64897					0.04511595120197853
PPVTTVPT	8	Unmodified	_PPVTTVPT_					0	0	0			REV__ENST00000467459.5_1_1:45794980-45797699:-|nuORF	REV__ENST00000467459.5_1_1:45794980-45797699:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.24853515625	2	406.231636	810.448719	0.22484	9.1338E-05	-2.3094	-0.00093815	-2.0846	-0.00084681	406.2305333334359	87.745	0.16799	87.566	87.448	87.616	-0.17875					5	3	2	0	0	0	0.027866	1	10658	10658		33.516	1.5607	1	43774	+		59537	23319	41775	41838	64898	64898					0.03591308603131438
PPVVLTLL	8	Unmodified	_PPVVLTLL_					0	0	0			REV__nc|ENSG00000005884|P26006-1|ITGA3	REV__nc|ENSG00000005884|P26006-1|ITGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2461853027344	2	426.283672	850.552791	0.24183	0.00010309	-3.496	-0.0014903	-3.2542	-0.0013872	426.2821171907399	86.689	0.12651	86.71	86.634	86.761	0.021263					4	2	2	0	0	0	0.027866	1	10822	10822		20.482	15.8	1	18193	+		59538	36428	41776	41839	64899	64899					0.12153635430661325
PPVVLTLL	8	Unmodified	_PPVVLTLL_					0	0	0			REV__nc|ENSG00000005884|P26006-1|ITGA3	REV__nc|ENSG00000005884|P26006-1|ITGA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	426.283672	850.552791	0.28768	0.00012263	-5.357	-0.0022836	-5.0694	-0.002161	426.2819016737513	86.94	0.37637	86.753	86.56	86.936	-0.18696	0.021722	-0.0011668	NaN	20.482	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31907	+		59539	36428	41776	41839							0.12153635430661325
PPVVVLDL	8	Unmodified	_PPVVVLDL_					0	0	0			REV__ENST00000496266.1_1_2:69002184-69002349:+|nuORF	REV__ENST00000496266.1_1_2:69002184-69002349:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2461853027344	2	426.265479	850.516405	0.079912	3.4064E-05	-3.3509	-0.0014284	-3.271	-0.0013943	426.2633880021588	86.789	0.33329	86.744	86.64	86.973	-0.045105					10	7	2	0	0	0	0.027866	1	10894	10894		19.36	1.0356	1	35209	+		59540	33821	41777	41840	64900	64900					0.08516758533960456
PPVVVPHQPRL	11	Unmodified	_PPVVVPHQPRL_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50942898-50943677:-|nuORF	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8695068359375	2	619.87204	1237.72953	-0.98358	-0.0006097	-3.588	-0.0022241	-4.5716	-0.0028338	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	1.0575	1	11437	11437		23.042	1.3567	1	1625000			59541	2161	41778	41841	64901	64901					0.1201706431365892
PPVVVPHQPRL	11	Unmodified	_PPVVVPHQPRL_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50942898-50943677:-|nuORF	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8695678710938	2	619.87204	1237.72953	-0.47108	-0.00029201	-3.6909	-0.0022879	-4.162	-0.0025799	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	0.99846	1	11583	11583		37.159	2.0071	1	4765600			59542	2161	41778	41841	64902	64902					0.1201706431365892
PPWLRRLRVVL	11	Unmodified	_PPWLRRLRVVL_					0	0	0		ENST00000308219.13_1_11:1482541-1482889:+|nuORF	ENST00000308219.13_1_11:1482541-1482889:+|nuORF	ENST00000308219.13_1_11:1482541-1482889:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.2892761230469	3	468.969863	1403.88776	-0.39206	-0.00018386	2.9292	0.0013737	2.5371	0.0011898	468.9711243831817	49.141	0.67432	48.959	48.631	49.305	-0.18206					38	17	3	0	0	0	0.024828	1	4866	4866		13.508	1.0751	1	298580			59543	12025	41779	41842	64903	64903					0.20196983292703408
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3692016601562	2	633.368267	1264.72198	0.38898	0.00024637	0.9253	0.00058605	1.3143	0.00083242	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	0.98904	1	11964	11964		39.253	2.0937	1	3178500			59544	11636	41780	41843	64904	64904					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3687744140625	2	633.368267	1264.72198	1.1238	0.00071176	0.27624	0.00017496	1.4	0.00088672	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	0.84811	11	12100	12088;12100;12124;12136;12184;12221;12233;12245;12256;12262;12273		54.776	13.485	1	8250400			59545	11636	41780	41843	64905;64906;64907;64908;64909;64910;64911;64912;64913;64914;64915	64906					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3696899414062	2	633.368267	1264.72198	-0.65795	-0.00041673	1.9688	0.0012469	1.3108	0.00083022	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	0.98218	2	11935	11851;11935		40.778	4.3314	1	3181800			59546	11636	41780	41843	64916;64917	64917					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3704223632812	2	633.368267	1264.72198	0.56004	0.00035471	0.82869	0.00052487	1.3887	0.00087958	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.6558	10	12161	12112;12124;12136;12161;12173;12185;12211;12238;12301;12313		66.429	21.569	1	8480900			59547	11636	41780	41843	64918;64919;64920;64921;64922;64923;64924;64925;64926;64927	64921					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3680419921875	2	633.368267	1264.72198	-0.5109	-0.00032359	1.8662	0.001182	1.3553	0.00085843	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.95124	6	11755	11745;11755;11767;11779;11791;11864		47.657	15.204	1	9245900			59548	11636	41780	41843	64928;64929;64930;64931;64932;64933	64929					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3697509765625	2	633.368267	1264.72198	-0.36915	-0.00023381	1.7925	0.0011353	1.4234	0.00090153	633.3692856842331	93.247	1.3144	93.125	92.182	93.497	-0.12215					76	30	4	0	0	0	1.018	1	11495	11495		32.812	0.85756	1	1726300			59549	11636	41780	41843	64934	64934					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3675537109375	2	633.368267	1264.72198	0.30625	0.00019397	0.94785	0.00060034	1.2541	0.00079431	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.782	8	11753	11753;11764;11788;11811;11908;11931;11943;12081		58.782	12.81	1	9528000			59550	11636	41780	41843	64935;64936;64937;64938;64939;64940;64941;64942	64935					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3696899414062	2	633.368267	1264.72198	-0.22417	-0.00014198	1.4864	0.00094144	1.2622	0.00079945	633.3690599981089	93.272	1.3142	93.128	92.169	93.483	-0.1441					76	30	4	0	0	0	0.9749	1	11455	11455		42.396	10.866	1	1667300			59551	11636	41780	41843	64943	64943					0.10020911993365189
PPWPLPLVSFI	11	Unmodified	_PPWPLPLVSFI_					0	0	0		ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	ENST00000269389.7_1_17:80285027-80291704:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3679809570312	2	633.368267	1264.72198	-0.4938	-0.00031276	1.6664	0.0010554	1.1726	0.00074267	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.95124	3	11749	11749;11760;11856		47.657	6.2817	1	9845500			59552	11636	41780	41843	64944;64945;64946	64944					0.10020911993365189
PPYGVLRSL	9	Unmodified	_PPYGVLRSL_					0	0	0		ENSG00000108924|ENST00000226067|HLF	ENSG00000108924|ENST00000226067|HLF	ENSG00000108924|ENST00000226067|HLF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.28973388671875	2	501.292559	1000.57057	0.31679	0.0001588	-4.3853	-0.0021983	-4.0685	-0.0020395	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.92825	1	10421	10421		30.504	2.6214	1	1878500			59553	2946	41781	41844	64947	64947					0.07030350685522535
PPYGVLRSL	9	Unmodified	_PPYGVLRSL_					0	0	0		ENSG00000108924|ENST00000226067|HLF	ENSG00000108924|ENST00000226067|HLF	ENSG00000108924|ENST00000226067|HLF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2914733886719	2	501.292559	1000.57057	-0.51649	-0.00025891	-4.3022	-0.0021567	-4.8187	-0.0024156	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.77768	1	10523	10523		40.778	1.5253	1	8326900			59554	2946	41781	41844	64948	64948					0.07030350685522535
PPYTFGGVPL	10	Unmodified	_PPYTFGGVPL_					0	0	0			REV__nc|ENSG00000137075|Q9H0F5-5|RNF38	REV__nc|ENSG00000137075|Q9H0F5-5|RNF38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2963256835938	2	524.279118	1046.54368	-0.84337	-0.00044216	0.97409	0.0005107	0.13072	6.8533E-05	524.280188684565	51.622	0.34629	51.475	51.263	51.609	-0.14735					11	9	2	0	0	0	0.03519	1	5475	5475		47.916	28.812	1	106930	+		59555	23723	41782	41845	64949	64949					0.022272420743320254
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3164672851562	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.82115	2	10980	10980;11016		37.812	2.1932	1	3529900	+		59556	21418	41783	41846	64950;64951	64950					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167724609375	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.34489	1	11477	11477		69.628	14.851	1	11705000	+		59557	21418	41783	41846	64952	64952					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3167114257812	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.6238	2	11461	11399;11461		51.193	13.381	1	11601000	+		59558	21418	41783	41846	64953;64954	64954					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3169555664062	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.74711	3	11388	11231;11388;11412		42.864	7.246	1	12792000	+		59559	21418	41783	41846	64955;64956;64957	64956					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3155517578125	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.91321	1	10445	10445		31.53	1.2121	1	4936700	+		59560	21418	41783	41846	64958	64958					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.318774	1088.623	-0.95668	-0.0005217	-2.7592	-0.0015046	-3.7159	-0.0020263	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.67244	2	11103	11103;11165		47.96	10.354	1	15621000	+		59561	21418	41783	41846	64959;64960	64959					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.31689453125	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.67244	2	11106	11106;11153		47.96	5.061	1	17400000	+		59562	21418	41783	41846	64961;64962	64961					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3162231445312	2	545.318774	1088.623	-0.379	-0.00020667	-3.8964	-0.0021248	-4.2754	-0.0023314	545.3165662277337	92.124	1.3857	92.001	91.674	93.059	-0.12242					90	32	4	0	0	0	0.70156	1	11299	11299		45.972	8.8131	1	1604000	+		59563	21418	41783	41846	64963	64963					0.08222889028479585
PPYTKKIKD	9	Unmodified	_PPYTKKIKD_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3162231445312	2	545.318774	1088.623	-0.30292	-0.00016519	-3.5803	-0.0019524	-3.8832	-0.0021176	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.84115	1	11206	11206		36.447	0.82846	1	17068000	+		59564	21418	41783	41846	64964	64964					0.08222889028479585
PPYYEIIP	8	Unmodified	_PPYYEIIP_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.779296875	2	496.260394	990.506234	-0.50547	-0.00025084	1.7641	0.00087543	1.2586	0.00062459	496.2596983168978	51.899	1.1603	51.751	50.972	52.132	-0.14735					63	32	3	0	0	0	0.027866	1	5416	5416		60.294	8.9585	1	277700	+		59565	22109	41784	41847	64965	64965					0.010601508087120237
PPYYEIIP	8	Unmodified	_PPYYEIIP_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.779296875	2	496.260394	990.506234	-0.84067	-0.00041719	2.4448	0.0012132	1.6041	0.00079605	496.2599710198992	51.701	1.2996	51.788	50.855	52.155	0.087009					70	35	3	0	0	0	0.027866	1	5335	5335		25.45	0	1	179320	+		59566	22109	41784	41847	64966	64966					0.010601508087120237
PQAAPAQPVI	10	Unmodified	_PQAAPAQPVI_					0	0	0			REV__nc|ENSG00000163349|Q86Z02-4|HIPK1	REV__nc|ENSG00000163349|Q86Z02-4|HIPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.268310546875	2	496.282192	990.549831	-0.32942	-0.00016349	-1.3301	-0.00066012	-1.6596	-0.00082361	496.2813130356361	35.156	0.52118	35.2	35.014	35.535	0.04406					23	13	2	0	0	0	0.03519	1	2662	2662		60.972	34.176	1	486700	+		59567	25555	41785	41848	64967	64967					0.05417760305840602
PQADGQNMVE	10	Unmodified	_PQADGQNMVE_					0	0	0		ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8107299804688	2	544.737488	1087.46042	-0.79836	-0.0004349	-3.2928	-0.0017937	-4.0912	-0.0022286	544.7358260176853	43.746	0.41882	43.641	43.434	43.853	-0.10468					15	10	2	0	0	0	0.03519	1	4063	4063		12.812	8.1992	1	215850			59568	10712	41786	41849	64968	64968					-0.07980862435829295
PQADGQNMVE	10	Unmodified	_PQADGQNMVE_					0	0	0		ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.737488	1087.46042	-1.499	-0.00081657	-3.5574	-0.0019379	-5.0564	-0.0027544	544.7356763181847	43.923	0.18685	43.704	43.562	43.749	-0.21939	0.031491	-0.00021652	NaN	18.262	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75880			59569	10712	41786	41849							-0.07980862435829295
PQAGKQSR	8	Unmodified	_PQAGKQSR_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7976989746094	2	436.240858	870.467164	-0.25691	-0.00011208	0.6691	0.00029189	0.41218	0.00017981	436.24099947951765	21.973	0.57415	21.782	21.468	22.042	-0.19072					23	11	3	0	0	0	0.027866	1	739	739		63.306	11.971	1	198020	+		59570	22399	41787	41850	64969	64969					0.026748632977046327
PQAGKQSR	8	Unmodified	_PQAGKQSR_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.240858	870.467164	-0.3955	-0.00017253	1.5081	0.0006579	1.1126	0.00048536	436.24107897177646	21.58	0.6182	21.58	21.441	22.06	0	-0.065593	0.00081503	NaN	71.296	17	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30511	+		59571	22399	41787	41850							0.026748632977046327
PQAGKQSR	8	Unmodified	_PQAGKQSR_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.240858	870.467164	-0.21399	-9.3352E-05	1.2372	0.00053974	1.0233	0.00044638	436.2410206121208	21.658	0.47258	21.568	21.354	21.826	-0.090092	-0.077745	0.00057871	NaN	71.296	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26040	+		59572	22399	41787	41850							0.026748632977046327
PQAGKQSR	8	Unmodified	_PQAGKQSR_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	436.240858	870.467164	-0.11194	-4.8832E-05	0.40985	0.00017879	0.29791	0.00012996	436.2408734424207	21.574	0.47787	21.646	21.401	21.879	0.071487	-0.0002879	-0.00014318	NaN	71.296	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29308	+		59573	22399	41787	41850							0.026748632977046327
PQAGKQSR	8	Unmodified	_PQAGKQSR_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	436.240858	870.467164	0.37963	0.00016561	0.11565	5.0452E-05	0.49529	0.00021606	436.24066254074046	21.789	0.71356	21.612	21.209	21.923	-0.17721	-0.034492	-0.00039986	NaN	71.296	30	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102470	+		59574	22399	41787	41850							0.026748632977046327
PQALGPLRVL	10	Unmodified	_PQALGPLRVL_					0	0	0			REV__ENST00000269321.11_1_17:79826145-79826631:-|nuORF	REV__ENST00000269321.11_1_17:79826145-79826631:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.771728515625	2	532.334759	1062.65496	-0.050354	-2.6805E-05	-0.16661	-8.8692E-05	-0.21696	-0.0001155	532.3345413602638	24.529	0.8082	24.607	24.364	25.173	0.078344					37	17	4	0	0	0	0.03519	1	1038	1038		35.618	11.416	1	244220	+		59575	29787	41788	41851	64970	64970					0.12614301502276248
PQAPPLPPP	9	Unmodified	_PQAPPLPPP_					0	0	0			REV__ATAD3A|p.R534Efs*5|1|0.18|ENSG00000197785|chr1:1527811-1527812|-/G|frameshift_variant	REV__ATAD3A|p.R534Efs*5|1|0.18|ENSG00000197785|chr1:1527811-1527812|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.7508850097656	2	457.260728	912.506903	-0.86591	-0.00039595	-2.2884	-0.0010464	-3.1543	-0.0014423	457.2596029101328	30.045	0.63352	29.866	29.57	30.203	-0.17818					20	14	2	0	0	0	0.02309	1	1847	1847		57.811	23.639	1	70486	+		59576	19180	41789	41852	64971	64971					0.04714990248419326
PQAVHPRAND	10	Unmodified	_PQAVHPRAND_					0	0	0			REV__ENSG00000170364|ENST00000358065|SETMAR	REV__ENSG00000170364|ENST00000358065|SETMAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7978515625	2	552.780879	1103.5472	-0.38426	-0.00021241	-2.8309	-0.0015649	-3.2152	-0.0017773	552.7791322196252	52.863	0.60725	52.716	52.488	53.096	-0.14723					24	15	2	0	0	0	0.03519	1	5708	5708		26.693	5.746	1	135490	+		59577	26459	41790	41853	64972	64972					-0.0004269509911409841
PQCCTTRCCT	10	Carbamidomethyl (C)	_PQCCTTRCC(Carbamidomethyl (C))T_	PQCCTTRC(0.418)C(0.582)T		PQC(-37)C(-37)TTRC(-1.4)C(1.4)T		0	1	0			REV__nc|ENSG00000198083|Q9BYP9|KRTAP9-9	REV__nc|ENSG00000198083|Q9BYP9|KRTAP9-9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.720947265625	2	586.719404	1171.42425	-1.2659	-0.00074272	3.7012	0.0021716	2.4354	0.0014289	586.721511999561	33.117	0.838	32.951	32.679	33.517	-0.16565					40	20	2	0	0	0	1.0236	1	2334	2334		42.864	8.6917	4	2449200	+		59578	27339	41791	41854	64973	64973	360				-0.15460102200222536
PQCDCITLQNV	11	Unmodified	_PQCDCITLQNV_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	617.2855224609375	2	617.283748	1232.55294	-0.31879	-0.00019678	3.5844	0.0022126	3.2656	0.0020158	617.2857664280264	68.643	0.76394	68.4	68.11	68.874	-0.24277					50	18	4	0	0	0	0.80896	1	7955	7955		47.96	5.5634	1	1526400			59579	7998	41792	41855	64974	64974					-0.05403100693979468
PQCLRRSR	8	Unmodified	_PQCLRRSR_					0	0	0		ENST00000276241.10_1_X:134305200-134305239:-|nuORF	ENST00000276241.10_1_X:134305200-134305239:-|nuORF	ENST00000276241.10_1_X:134305200-134305239:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7823181152344	2	508.282534	1014.55052	-0.5438	-0.00027641	-0.37254	-0.00018935	-0.91634	-0.00046576	508.78497697278766	49.092	0.58656	48.812	48.575	49.161	-0.27977					26	15	2	0	0	0	0.027866	1	4860	4860		33.516	0	1	276400			59580	11693	41793	41856	64975	64975					0.04382276473904767
PQCTPLGLLPR	11	Unmodified	_PQCTPLGLLPR_					0	0	0			REV__ENST00000309100.7_1_11:65365726-65365900:-|nuORF	REV__ENST00000309100.7_1_11:65365726-65365900:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.2988891601562	2	597.836808	1193.65906	-0.38286	-0.00022889	-2.5399	-0.0015185	-2.9228	-0.0017473	597.835490298315	69.591	0.41122	69.369	69.145	69.556	-0.22245					15	9	2	0	0	0	0.024736	1	8094	8094		31.634	8.1116	1	101230	+		59581	30158	41794	41857	64976	64976					0.06998022933657921
PQCVMFPF	8	Unmodified	_PQCVMFPF_					0	0	0		ENST00000467666.2_1_1:85961913-86042365:-|nuORF	ENST00000467666.2_1_1:85961913-86042365:-|nuORF	ENST00000467666.2_1_1:85961913-86042365:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.77874755859375	2	484.722067	967.429581	0.12783	6.1964E-05	2.641	0.0012802	2.7689	0.0013421	484.72327040990086	62.103	0.5498	61.845	61.547	62.097	-0.25725					30	13	3	0	0	0	0.027866	1	6986	6986		26.796	0	1	689070			59582	14848	41795	41858	64977	64977					-0.05543687283761756
PQDFALHII	9	Unmodified	_PQDFALHII_					0	0	0		nc|ENSG00000169435|Q6ZTQ3|RASSF6;nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6	nc|ENSG00000169435|Q6ZTQ3|RASSF6	nc|ENSG00000169435|Q6ZTQ3|RASSF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.7904663085938	2	527.290017	1052.56548	-0.49147	-0.00025915	3.6469	0.001923	3.1555	0.0016638	527.2921224480627	60.125	0.63116	60.125	59.914	60.546	0					25	16	2	0	0	0	0.024293	1	6898	6898		33.516	17.042	1	1085700			59583	18501	41796	41859	64978	64978					0.04130046822888289
PQDGLLLHG	9	Unmodified	_PQDGLLLHG_					0	0	0		ENSG00000135638|ENST00000258106|EMX1;nc|ENSG00000135638|Q04741-2|EMX1;ENST00000491023.3_1_2:73150840-73161080:+|nuORF;ENST00000464675.2_1_2:73151292-73161080:+|nuORF;ENST00000394111.6_1_2:73143891-73161080:+|nuORF	ENSG00000135638|ENST00000258106|EMX1	ENSG00000135638|ENST00000258106|EMX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7876281738281	2	475.258717	948.50288	2.1191	0.0010071	-1.2648	-0.00060111	0.85431	0.00040602	475.25786829028135	59.829	0.35502	59.829	59.559	59.914	0					15	9	2	0	0	0	0.024323	1	6815	6815		53.351	14.33	1	161380			59584	4919	41797	41860	64979	64979					0.02656900754709568
PQDGLLLHG	9	Unmodified	_PQDGLLLHG_					0	0	0		ENSG00000135638|ENST00000258106|EMX1;nc|ENSG00000135638|Q04741-2|EMX1;ENST00000491023.3_1_2:73150840-73161080:+|nuORF;ENST00000464675.2_1_2:73151292-73161080:+|nuORF;ENST00000394111.6_1_2:73143891-73161080:+|nuORF	ENSG00000135638|ENST00000258106|EMX1	ENSG00000135638|ENST00000258106|EMX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.258717	948.50288	-0.37113	-0.00017638	3.2459	0.0015426	2.8748	0.0013663	475.25959398122694	60.24	0.11008	59.991	59.909	60.019	-0.24842	0.081322	0.0026748	NaN	79.713	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58479			59585	4919	41797	41860							0.02656900754709568
PQDNQKLNH	9	Unmodified	_PQDNQKLNH_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3271484375	2	547.272887	1092.53122	-0.34863	-0.0001908	4.4576	0.0024395	4.109	0.0022487	547.2755439986166	41.329	2.277	41.206	40.084	42.361	-0.12317					204	64	5	0	0	0	0.022083	1	3673	3673		87.754	2.8388	1	14708000	+		59586	28526	41798	41861	64980	64980					-0.011344013360258032
PQDSRLYL	8	Unmodified	_PQDSRLYL_					0	0	0		ENSG00000104946|ENST00000221543|TBC1D17;nc|ENSG00000104946|Q9HA65-3|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF	ENSG00000104946|ENST00000221543|TBC1D17	ENSG00000104946|ENST00000221543|TBC1D17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7978820800781	2	496.263999	990.513445	0.038018	1.8867E-05	2.1239	0.001054	2.1619	0.0010729	496.26478561957623	34.282	0.5802	34.282	33.972	34.552	0					21	14	2	0	0	0	0.027866	1	2527	2527		50.025	12.865	1	107370			59587	2622	41799	41862	64981	64981					0.01780883409139733
PQDVVRIL	8	Unmodified	_PQDVVRIL_					0	0	0		ENSG00000235631|ENST00000434824|RNF148	ENSG00000235631|ENST00000434824|RNF148	ENSG00000235631|ENST00000434824|RNF148	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.27459716796875	2	470.284734	938.554916	-0.55723	-0.00026205	2.4437	0.0011492	1.8864	0.00088717	470.28535229984834	49.56	0.63515	49.634	49.169	49.804	0.074196					21	16	2	0	0	0	0.027866	1	5015	5015		44.117	13.613	1	389870			59588	10733	41800	41863	64982	64982					0.08318064168486217
PQEEEIRVNS	10	Unmodified	_PQEEEIRVNS_					0	0	0			REV__nc|ENSG00000100678|P57103-7|SLC8A3	REV__nc|ENSG00000100678|P57103-7|SLC8A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.8669128417969	3	400.866687	1199.57823	7.624	0.0030562	-3.6618	-0.0014679	3.9622	0.0015883	400.8652067388907	17.789	0.4506	17.85	17.686	18.137	0.06036					17	10	3	0	0	0	1.1067	1	171	171		14.086	0.57807	1	29473	+		59589	36522	41801	41864	64983	64983					-0.01357586575500136
PQEEKRKTL	9	Unmodified	_PQEEKRKTL_					0	0	0			REV__nc|ENSG00000125386|P78312-6|FAM193A	REV__nc|ENSG00000125386|P78312-6|FAM193A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.8218383789062	2	564.822212	1127.62987	-0.037935	-2.1427E-05	0.012555	7.0915E-06	-0.02538	-1.4335E-05	564.8220873901749	18.31	0.6403	18.179	17.908	18.549	-0.13147					25	12	3	0	0	0	0.70156	1	273	273		45.972	0	1	234830	+		59590	36633	41802	41865	64984	64984					0.07116201909047959
PQEIVAPI	8	Unmodified	_PQEIVAPI_					0	0	0			REV__ENSG00000196659|ENST00000408939|TTC30B	REV__ENSG00000196659|ENST00000408939|TTC30B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.91265869140625	2	433.752736	865.490919	-0.24113	-0.00010459	-2.4225	-0.0010508	-2.6636	-0.0011554	433.7515958938819	21.566	0.76654	21.476	21.109	21.875	-0.090092					25	15	2	0	0	0	0.027866	1	626	626		19.36	0	1	230230	+		59591	28210	41803	41866	64985	64985					0.05279284011510299
PQEIVDYIA	9	Unmodified	_PQEIVDYIA_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2371826171875	2	524.27149	1046.52843	-0.95017	-0.00049815	2.9229	0.0015324	1.9727	0.0010342	524.2727706911542	44.539	0.39792	44.324	44.112	44.51	-0.21498					16	10	2	0	0	0	0.02435	1	4163	4163		34.173	13.691	1	162090			59592	745	41804	41867	64986	64986					0.00702330486478786
PQELKEVD	8	Unmodified	_PQELKEVD_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.3019714355469	2	479.248015	956.481476	-1.0668	-0.00051124	3.0222	0.0014484	1.9555	0.00093715	479.2492345031115	33.741	0.58549	33.565	33.311	33.896	-0.17557					25	14	2	0	0	0	0.027866	1	2376	2376		35.618	3.6634	1	713410			59593	4109	41805	41868	64987	64987					0.001494709353323742
PQEPQWSL	8	Unmodified	_PQEPQWSL_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.8061828613281	2	492.742899	983.471246	0.55266	0.00027232	-1.4554	-0.00071713	-0.90273	-0.00044481	492.7407847625751	18.911	0.59268	18.707	18.46	19.053	-0.20371					23	11	3	0	0	0	0.027866	1	364	364		29.15	7.1897	1	41033			59594	3587	41806	41869	64988	64988					-0.02115091999235119
PQFSLCRY	8	Unmodified	_PQFSLCRY_					0	0	0			REV__ENSG00000111424|ENST00000549336|VDR	REV__ENSG00000111424|ENST00000549336|VDR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7698059082031	2	507.247295	1012.48004	-0.22192	-0.00011257	3.1795	0.0016128	2.9576	0.0015002	507.24866145092363	36.772	0.90326	36.709	36.187	37.091	-0.063385					35	23	2	0	0	0	0.027866	1	2860	2860		25.45	3.7478	1	354680	+		59595	21918	41807	41870	64989	64989					-0.025704416344069614
PQGAHMGTLV	10	Unmodified	_PQGAHMGTLV_					0	0	0			REV__ENSG00000129946|ENST00000264554|SHC2	REV__ENSG00000129946|ENST00000264554|SHC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7563781738281	2	505.758027	1009.5015	0.38029	0.00019234	-1.5209	-0.00076921	-1.1406	-0.00057688	505.75711112467206	100.82	0.60191	100.69	100.55	101.15	-0.12576					36	16	3	0	0	0	1.0616	1	12535	12535		37.812	0.65241	1	277730	+		59596	23068	41808	41871	64990	64990					-0.002870566056799362
PQGDKSARHI	10	Unmodified	_PQGDKSARHI_					0	0	0			REV__nc|ENSG00000108469|O94762-4|RECQL5	REV__nc|ENSG00000108469|O94762-4|RECQL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8314819335938	2	554.796529	1107.5785	-1.005	-0.0005576	2.6634	0.0014776	1.6583	0.00092005	554.7980588619567	48.727	0.46544	48.448	48.253	48.718	-0.27977					16	12	2	0	0	0	0.03519	1	4866	4866		42.864	1.4377	1	191990	+		59597	21738	41809	41872	64991	64991					0.029018779349826218
PQGGILKIN	9	Unmodified	_PQGGILKIN_					0	0	0		nc|ENSG00000106069|P52757-9|CHN2	nc|ENSG00000106069|P52757-9|CHN2	nc|ENSG00000106069|P52757-9|CHN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.76904296875	2	470.284734	938.554916	0.019334	9.0924E-06	-0.036115	-1.6984E-05	-0.016781	-7.8918E-06	470.284433557067	35.827	0.65932	35.614	35.395	36.054	-0.21246					21	18	2	0	0	0	0.024	1	2718	2718		37.159	0	1	216460			59598	18154	41810	41873	64992	64992					0.08318064168474848
PQGKTLRN	8	Unmodified	_PQGKTLRN_					0	0	0		ENST00000530702.1_2_11:10827460-10828835:-|nuORF;ENST00000526148.5_2_11:10827460-10828835:-|nuORF;ENST00000525995.1_1_11:10827460-10829842:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2638244628906	2	457.264333	912.514114	0.17052	7.7972E-05	-0.16769	-7.6678E-05	0.0028298	1.2939E-06	457.26418172468357	78.803	2.5833	78.647	77.361	79.944	-0.15591					144	60	5	0	0	0	1.0574	1	9410	9410		23.042	0	1	998950			59599	16113	41811	41874	64993	64993					0.054357228488470355
PQGLGWSQVPR	11	Unmodified	_PQGLGWSQVPR_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	612.7982177734375	2	612.827829	1223.64111	-0.20933	-0.00012829	-4.195	-0.0025708	-4.4043	-0.0026991	612.8257051125981	58.585	0.35936	58.404	58.228	58.587	-0.18134					13	8	2	0	0	0	0.024756	1	6466	6466		36.447	8.5645	1	522480			59600	4828	41812	41875	64994	64994					0.038230240031680296
PQGNVNSVLSP	11	Unmodified	_PQGNVNSVLSP_					0	0	0			REV__ENSG00000166959|ENST00000300226|MS4A8	REV__ENSG00000166959|ENST00000300226|MS4A8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.7911987304688	2	556.290745	1110.56694	0.18677	0.0001039	-3.6511	-0.0020311	-3.4643	-0.0019272	556.291150292279	103.88	0.49609	103.71	103.44	103.94	-0.16791					16	11	2	0	0	0	1.0183	1	12924	12924		32.751	3.601	1	37089	+		59601	26089	41813	41876	64995	64995					0.01607636120979805
PQGPFTTW	8	Unmodified	_PQGPFTTW_					0	0	0		ENSG00000205085|ENST00000682356|GARIN1A;nc|ENSG00000205085|Q6NXP2|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7152404785156	2	467.226885	932.439217	-0.24968	-0.00011666	-3.1819	-0.0014867	-3.4316	-0.0016033	467.22647948672534	26.651	1.4548	26.627	25.567	27.022	-0.023088					77	34	4	0	0	0	0.027866	1	1295	1295		25.45	0	1	230850			59602	10403	41814	41877	64996	64996					-0.02970459682398996
PQGPLVLVGTA	11	Unmodified	_PQGPLVLVGTA_					0	0	0			REV__SON|p.E631V|1|0.14|ENSG00000159140|chr21:33551123-33551123|A/T|missense_variant	REV__SON|p.E631V|1|0.14|ENSG00000159140|chr21:33551123-33551123|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7767944335938	2	526.310949	1050.60735	-0.25541	-0.00013443	3.8467	0.0020246	3.5913	0.0018902	526.8138300461153	49.357	0.44382	49.357	49.176	49.62	0					15	11	2	0	0	0	0.024727	1	5090	5090		18.262	0	1	300970	+		59603	37520	41815	41878	64997	64997					0.08406602511445271
PQHFSAAS	8	Unmodified	_PQHFSAAS_					0	0	0			REV__ENSG00000198833|ENST00000435041|UBE2J1	REV__ENSG00000198833|ENST00000435041|UBE2J1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5549011230469	2	422.701035	843.387516	0.092042	3.8906E-05	-0.70882	-0.00029962	-0.61678	-0.00026071	422.70101353315164	24.332	0.22279	24.117	23.954	24.177	-0.2151					6	4	2	0	0	0	0.027866	1	1042	1042		17.365	9.6747	1	19620	+		59604	28492	41816	41879	64998	64998					-0.040442033762928986
PQHPKKNCL	9	Unmodified	_PQHPKKNCL_					0	0	0		ENST00000465577.5_1_10:127477439-127486658:-|nuORF	ENST00000465577.5_1_10:127477439-127486658:-|nuORF	ENST00000465577.5_1_10:127477439-127486658:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7904663085938	2	532.787118	1063.55968	0.99001	0.00052746	3.947	0.0021029	4.937	0.0026304	532.7892468952358	63.983	1.2106	64.029	63.688	64.899	0.045498					127	32	6	0	0	0	0.70186	1	7506	7506		45.952	1.5748	1	67508000			59605	14788	41817	41880	64999	64999					0.03044625039569837
PQHRKDRW	8	Unmodified	_PQHRKDRW_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.31298828125	2	561.799406	1121.58426	-0.80218	-0.00045066	-0.50444	-0.0002834	-1.3066	-0.00073406	561.7989539432035	44.664	0.44759	44.419	44.151	44.598	-0.2444					26	11	3	0	0	0	0.027866	1	4189	4189		31.955	0	1	449520			59606	2291	41818	41881	65000	65000					0.028330212373248287
PQIFTSLII	9	Unmodified	_PQIFTSLII_					0	0	0		chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2;chr4:70528758-70531039|110|16.04|0.0|11.81|+|0|AMTN,AMTN|1;nc|ENSG00000187689|Q6UX39-2|AMTN;chr4:70518831-70522758|383|86.36|0.13|9.41|+|ENST00000504451|AMTN,AMTN;ENSG00000187689|ENST00000339336|AMTN	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7481079101562	2	516.310418	1030.60628	0.25169	0.00012995	-1.6792	-0.00086697	-1.4275	-0.00073702	516.3091163659162	63.825	0.55365	63.567	63.239	63.792	-0.25824					19	14	2	0	0	0	0.024319	1	7219	7219		47.657	3.2801	1	274860			59607	396	41819	41882	65001	65001					0.0922038814253483
PQIFTSLII	9	Unmodified	_PQIFTSLII_					0	0	0		chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2;chr4:70528758-70531039|110|16.04|0.0|11.81|+|0|AMTN,AMTN|1;nc|ENSG00000187689|Q6UX39-2|AMTN;chr4:70518831-70522758|383|86.36|0.13|9.41|+|ENST00000504451|AMTN,AMTN;ENSG00000187689|ENST00000339336|AMTN	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.310418	1030.60628	-0.55953	-0.00028889	-0.4018	-0.00020745	-0.96133	-0.00049635	516.3098789816752	63.21	0.62008	63.21	62.938	63.558	0	-0.19902	0.00073455	NaN	47.657	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107500			59608	396	41819	41882							0.0922038814253483
PQIFTSLII	9	Unmodified	_PQIFTSLII_					0	0	0		chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2;chr4:70528758-70531039|110|16.04|0.0|11.81|+|0|AMTN,AMTN|1;nc|ENSG00000187689|Q6UX39-2|AMTN;chr4:70518831-70522758|383|86.36|0.13|9.41|+|ENST00000504451|AMTN,AMTN;ENSG00000187689|ENST00000339336|AMTN	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.310418	1030.60628	-0.045037	-2.3253E-05	-0.78209	-0.0004038	-0.82713	-0.00042705	516.3098234512615	63.47	0.6181	63.219	62.935	63.553	-0.25141	-0.1898	0.00034186	NaN	47.657	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1084500			59609	396	41819	41882							0.0922038814253483
PQIFTSLII	9	Unmodified	_PQIFTSLII_					0	0	0		chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2;chr4:70528758-70531039|110|16.04|0.0|11.81|+|0|AMTN,AMTN|1;nc|ENSG00000187689|Q6UX39-2|AMTN;chr4:70518831-70522758|383|86.36|0.13|9.41|+|ENST00000504451|AMTN,AMTN;ENSG00000187689|ENST00000339336|AMTN	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	chr4:70529210-70531039|454|346.69|1.0|8.44|+|0|AMTN,AMTN|2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.310418	1030.60628	0.72661	0.00037516	-1.8555	-0.00095803	-1.1289	-0.00058287	516.3089788905786	63.154	0.61799	63.208	62.974	63.592	0.054104	-0.20035	-0.00076659	NaN	47.657	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1010300			59610	396	41819	41882							0.0922038814253483
PQILTKMK	8	Oxidation (M)	_PQILTKM(Oxidation (M))K_		PQILTKM(1)K		PQILTKM(88)K	0	0	1		ENST00000586479.1_1_19:11464096-11464249:+|nuORF	ENST00000586479.1_1_19:11464096-11464249:+|nuORF	ENST00000586479.1_1_19:11464096-11464249:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2527770996094	2	487.788795	973.563038	-0.79357	-0.00038709	-1.6543	-0.00080695	-2.4479	-0.001194	487.78981989885773	29.27	0.35572	29.348	29.054	29.41	0.078344					11	8	2	0	0	0	0.027866	1	1703	1703		87.754	59.872	1	48505			59611	17244	41820	41883	65002	65002		550			0.0751987509358969
PQIMQNYQCI	10	Unmodified	_PQIMQNYQCI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.20733642578125	3	413.194981	1236.56311	-0.51926	-0.00021456	-1.2859	-0.00053132	-1.8051	-0.00074588	413.19432818481874	22.304	0.6581	22.118	21.667	22.325	-0.18539					17	13	2	0	0	0	0.03519	1	787	787		31.634	9.0727	1	43104			59612	6595	41821	41884	65003	65003					-0.04570492968719009
PQIMQNYQCI	10	Unmodified	_PQIMQNYQCI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	413.194981	1236.56311	0.40668	0.00016804	-1.9483	-0.00080502	-1.5416	-0.00063698	413.193961836467	22.014	0.47489	21.825	21.58	22.055	-0.18894	-0.14222	-0.00029785	NaN	31.634	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44121			59613	6595	41821	41884							-0.04570492968719009
PQIQPRQF	8	Unmodified	_PQIQPRQF_					0	0	0			REV__EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant	REV__EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.28033447265625	2	507.279983	1012.54541	-0.44595	-0.00022622	-0.38445	-0.00019503	-0.8304	-0.00042125	507.27989582869645	49.861	1.2667	49.861	49.473	50.74	0					100	36	5	0	0	0	0.93274	2	5156	5156;5191		47.916	8.6628	1	21196000	+		59614	19743	41822	41885	65004;65005	65004					0.03964295882940405
PQIQPRQF	8	Unmodified	_PQIQPRQF_					0	0	0			REV__EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant	REV__EIF4G3|p.M812Vfs*17|1|0.21|ENSG00000075151|chr1:20879342-20879343|AT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2805480957031	2	507.279983	1012.54541	-0.53355	-0.00027066	-0.1819	-9.2273E-05	-0.71545	-0.00036293	507.2799725785459	49.748	1.2785	49.823	49.391	50.669	0.074192					98	36	5	0	0	0	0.81662	1	5086	5086		57.811	2.3071	1	21543000	+		59615	19743	41822	41885	65006	65006					0.03964295882940405
PQIRERLK	8	Unmodified	_PQIRERLK_					0	0	0			REV__ENSG00000133104|ENST00000438666|SPART	REV__ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3218383789062	2	520.322183	1038.62981	0.21613	0.00011246	-0.68537	-0.00035662	-0.46924	-0.00024416	520.3217464400306	17.868	0.78823	17.726	17.503	18.291	-0.14278					36	15	4	0	0	0	0.87148	1	217	217		53.351	0	1	1089300	+		59616	23348	41823	41886	65007	65007					0.11204246699685427
PQIVEHLAGV	10	Unmodified	_PQIVEHLAGV_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3156127929688	2	531.800749	1061.58694	-1.497	-0.0007961	-2.8733	-0.001528	-4.3703	-0.0023241	531.8014643830693	65.066	0.72506	64.864	64.461	65.186	-0.20254					19	15	2	0	0	0	0.03519	1	7466	7466		34.173	3.6689	1	132900			59617	5259	41824	41887	65008	65008					0.058614318515992636
PQKATAPVK	9	Unmodified	_PQKATAPVK_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.7515563964844	2	470.284734	938.554916	0.36281	0.00017062	-0.78706	-0.00037014	-0.42425	-0.00019952	470.28416605791585	23.833	0.68787	23.631	23.279	23.967	-0.20193					29	15	3	0	0	0	0.024354	1	1001	1001		38.806	15.764	1	300550			59618	7695	41825	41888	65009	65009					0.08318064168474848
PQKAVPPKP	9	Unmodified	_PQKAVPPKP_					0	0	0		ENST00000266971.7_1_12:56391015-56391503:+|nuORF	ENST00000266971.7_1_12:56391015-56391503:+|nuORF	ENST00000266971.7_1_12:56391015-56391503:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.7685241699219	2	481.295102	960.575651	-0.72497	-0.00034893	0.46508	0.00022384	-0.25989	-0.00012508	481.2963307683659	44.899	0.47395	44.646	44.391	44.865	-0.25252					20	11	3	0	0	0	0.024506	1	4169	4169		6.3127	0	1	115060			59619	11613	41826	41889	65010	65010					0.09378654548129362
PQKGCIYPTQ	10	Unmodified	_PQKGCIYPTQ_					0	0	0		ENST00000497440.5_1_4:77357286-77566698:+|nuORF	ENST00000497440.5_1_4:77357286-77566698:+|nuORF	ENST00000497440.5_1_4:77357286-77566698:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	567.781494140625	2	567.784241	1133.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.742	1	17.599	17.099	18.099	-0.14278								0	0	0	0.75822	1	194	194		25.574	2.0514	1				59620	15592	41827	41890	65011	65011					-0.0075051826272556355
PQKKEGKAQ	9	Unmodified	_PQKKEGKAQ_					0	0	0		ENSG00000088876|ENST00000278772|ZNF343;nc|ENSG00000088876|Q6P1L6-3|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.818603515625	2	507.290548	1012.56654	1.2842	0.00065145	-0.27273	-0.00013835	1.0114	0.00051309	507.2901998830824	23.185	0.40968	22.994	22.758	23.167	-0.19117					11	8	2	0	0	0	0.024344	1	844	844		54.776	5.3348	1	46950			59621	1882	41828	41891	65012	65012					0.06076261191810772
PQKKEGKAQ	9	Unmodified	_PQKKEGKAQ_					0	0	0		ENSG00000088876|ENST00000278772|ZNF343;nc|ENSG00000088876|Q6P1L6-3|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.290548	1012.56654	-0.60477	-0.00030679	4.1806	0.0021208	3.5759	0.001814	507.79344386746334	23.131	0.43493	23.131	22.848	23.283	0	0.053115	0.002029	NaN	54.776	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64471			59622	1882	41828	41891							0.06076261191810772
PQKKEGKAQ	9	Unmodified	_PQKKEGKAQ_					0	0	0		ENSG00000088876|ENST00000278772|ZNF343;nc|ENSG00000088876|Q6P1L6-3|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	ENSG00000088876|ENST00000278772|ZNF343	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.290548	1012.56654	-0.54133	-0.00027461	5.5301	0.0028054	4.9888	0.0025308	507.7934078179122	23.168	0.51387	23.107	22.753	23.267	-0.060862	0.029969	0.0033981	NaN	54.776	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60442			59623	1882	41828	41891							0.06076261191810772
PQKKPEVI	8	Unmodified	_PQKKPEVI_					0	0	0		nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-4|C2CD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.2892761230469	2	469.78711	937.559667	-0.58075	-0.00027283	-2.504	-0.0011763	-3.0847	-0.0014492	469.78535383691286	48.937	0.2545	48.755	48.667	48.921	-0.18206					10	6	2	0	0	0	0.027866	1	4866	4866		53.351	2.016	1	67681			59624	7770;18486	41829	41892	65013	65013					0.08838948311222339
PQKLVPYPLLN	11	Unmodified	_PQKLVPYPLLN_					0	0	0			REV__ENST00000529124.1_1_11:67012581-67016021:+|nuORF	REV__ENST00000529124.1_1_11:67012581-67016021:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.3840942382812	2	641.381906	1280.74926	0.67978	0.000436	3.6528	0.0023429	4.3326	0.0027789	641.3840767110357	101.35	0.78249	101.35	100.99	101.77	0					50	17	4	0	0	0	1.0483	1	12964	12964		25.574	0.44807	1	1108100	+		59625	34510	41830	41893	65014	65014					0.12011395533750147
PQKNPPSCHLN	11	Unmodified	_PQKNPPSCHLN_					0	0	0			REV__ENST00000219281.7_1_16:58054788-58055016:+|nuORF	REV__ENST00000219281.7_1_16:58054788-58055016:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.9264831542969	3	412.204757	1233.59244	0.30566	0.000126	0.23274	9.5935E-05	0.5384	0.00022193	412.2048047998547	31.578	1.1479	31.578	30.961	32.109	0					43	27	2	0	0	0	0.02473	1	2066	2066		21.032	0	1	119640	+		59626	29336	41831	41894	65015	65015					-0.015012126282044846
PQKTKLGQL	9	Unmodified	_PQKTKLGQL_					0	0	0			REV__nc|ENSG00000284969|P13987-2|CD59	REV__nc|ENSG00000284969|P13987-2|CD59	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.81085205078125	2	506.811116	1011.60768	3.2469	0.0016456	-3.5852	-0.001817	-0.33825	-0.00017143	506.8092007911716	17.721	0.6879	17.721	17.399	18.087	0					23	13	2	0	0	0	0.72875	1	197	197		44.117	0	1	352440	+		59627	28664	41832	41895	65016	65016					0.10234022231270501
PQKVKVFGPG	10	Unmodified	_PQKVKVFGPG_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.8223266601562	2	528.813659	1055.61277	-0.89055	-0.00047093	-1.4782	-0.00078168	-2.3687	-0.0012526	528.8117007779904	32.707	0.5218	32.719	32.45	32.972	0.011799					36	13	4	0	0	0	0.03519	1	2272	2272		6.3127	0	1	430680			59628	4979	41833	41896	65017	65017					0.08718326093912765
PQKWPELS	8	Unmodified	_PQKWPELS_					0	0	0		ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.30340576171875	2	492.761092	983.507631	-0.43187	-0.00021281	-4.0784	-0.0020097	-4.5103	-0.0022225	492.75887659477496	31.612	0.51925	31.681	31.366	31.886	0.068962					22	12	2	0	0	0	0.027866	1	2080	2080		30.504	4.9296	1	153900			59629	6766	41834	41897	65018	65018					0.0152178489746575
PQKYFSTL	8	Unmodified	_PQKYFSTL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.310791015625	2	492.263468	982.512382	-0.43991	-0.00021655	0.88692	0.0004366	0.44701	0.00022005	492.26498550660517	61.652	0.18401	61.723	61.63	61.814	0.071125					6	4	2	0	0	0	0.027866	1	7070	7070		24.203	11.996	1	51896			59630	1845	41835	41898	65019	65019					0.02042669040235978
PQLASLCLENI	11	Unmodified	_PQLASLCLENI_					0	0	0		ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2303771972656	3	400.88128	1199.62201	0.19997	8.0164E-05	2.9566	0.0011852	3.1566	0.0012654	400.88239726547084	21.645	0.71746	21.555	21.207	21.924	-0.090092					36	14	4	0	0	0	0.024757	1	718	718		20.315	0	1	244080			59631	4694	41836	41899	65020	65020					0.03018306597255105
PQLASVEMV	9	Unmodified	_PQLASVEMV_					0	0	0			REV__ENST00000534764.1_2_11:123431223-123431307:+|nuORF	REV__ENST00000534764.1_2_11:123431223-123431307:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.29034423828125	2	487.254785	972.495018	-0.77269	-0.0003765	2.0442	0.00099606	1.2715	0.00061956	487.2549741743739	28.027	0.97158	28.027	27.435	28.406	0					31	24	2	0	0	0	0.024323	1	1517	1517		27.882	2.3082	1	50435	+		59632	34651	41837	41900	65021	65021					0.007670054429354423
PQLDEKRWGWR	11	Unmodified	_PQLDEKRWGWR_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D;nc|ENSG00000146700|Q8WTU2-2|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.3184509277344	3	490.92487	1469.75278	-1.3054	-0.00064083	-2.2863	-0.0011224	-3.5917	-0.0017632	491.258510422307	29.507	0.25779	29.262	29.099	29.357	-0.24524					6	5	2	0	0	0	0.02484	1	1807	1807		17.167	1.8336	1	23637			59633	5901	41838	41901	65022	65022					0.03669458360309363
PQLEALQEL	9	Unmodified	_PQLEALQEL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7852172851562	2	520.784764	1039.55498	-0.065214	-3.3962E-05	-0.92283	-0.00048059	-0.98804	-0.00051456	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	0.77768	1	13630	13630		40.778	1.5253	1	7303900			59634	5547	41839	41902	65023	65023					0.036780193777985914
PQLEALQEL	9	Unmodified	_PQLEALQEL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7838134765625	2	520.784764	1039.55498	-0.17121	-8.9164E-05	-0.92176	-0.00048004	-1.093	-0.0005692	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	0.80003	1	13607	13607		39.253	2.0937	1	7199700			59635	5547	41839	41902	65024	65024					0.036780193777985914
PQLEVLAL	8	Unmodified	_PQLEVLAL_					0	0	0			REV__ENSG00000166145|ENST00000562057|SPINT1	REV__ENSG00000166145|ENST00000562057|SPINT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7679748535156	2	441.768386	881.522219	0.14561	6.4327E-05	-1.2505	-0.00055245	-1.1049	-0.00048812	441.76790990667746	102.78	1.6063	102.79	102.46	104.06	0.0054169					106	40	5	0	0	0	1.0572	1	13154	13154		28.254	0	1	27080000	+		59636	25977	41840	41903	65025	65025					0.07671857045602337
PQLFLHVL	8	Unmodified	_PQLFLHVL_					0	0	0			REV__ENST00000401957.6_1_7:22159717-22159825:-|nuORF	REV__ENST00000401957.6_1_7:22159717-22159825:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7903137207031	2	483.792195	965.569838	-0.191	-9.2404E-05	-4.1796	-0.002022	-4.3706	-0.0021145	483.7900658872306	47.71	1.4158	47.557	47.089	48.505	-0.15301					76	41	3	0	0	0	0.96719	1	4811	4811		42.474	5.3154	1	5322100	+		59637	31865	41841	41904	65026	65026					0.08567556036450696
PQLIMIKL	8	Unmodified	_PQLIMIKL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57-2|DNAH3;DNAH3|p.E992Qfs*16|1|0.32|ENSG00000158486|chr16:21075545-21075557|CACCAATGGGCTC/-|frameshift_variant	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.305908203125	2	478.304081	954.59361	0.25372	0.00012136	3.9145	0.0018723	4.1683	0.0019937	478.3057924759216	18.689	1.0883	18.485	17.965	19.053	-0.20371					36	21	3	0	0	0	0.78609	1	324	324		60.294	10.269	1	268400			59638	6676	41842	41905	65027	65027					0.11449653478621258
PQLKSLET	8	Unmodified	_PQLKSLET_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.78717041015625	2	458.260925	914.507297	-0.12001	-5.4995E-05	2.6918	0.0012336	2.5718	0.0011786	458.26626906969136	27.462	0.45998	27.305	27.061	27.521	-0.15664					16	10	3	0	0	0	0.027866	1	1464	1464		27.882	0	1	43927			59639	8905	41843	41906	65028	65028					0.04662365177614447
PQLKYKVE	8	Unmodified	_PQLKYKVE_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76629638671875	2	502.792392	1003.57023	0.15276	7.6807E-05	1.4826	0.00074546	1.6354	0.00082226	503.29387752662274	58.67	0.15124	58.483	58.424	58.575	-0.18705					5	3	2	0	0	0	0.027866	1	6622	6622		18.324	0.95945	1	105180			59640	3446	41844	41907	65029	65029					0.06858930965654508
PQLLAIMAEL	10	Unmodified	_PQLLAIMAEL_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.24169921875	2	549.81501	1097.61547	-0.29306	-0.00016113	-3.4723	-0.0019091	-3.7654	-0.0020702	549.8131699880072	49.394	0.42212	49.294	49.107	49.529	-0.1008					16	10	2	0	0	0	0.03519	1	4991	4991		19.997	5.8596	1	361460			59641	6487	41845	41908	65030	65030					0.07056413436521325
PQLLLLLET	9	Unmodified	_PQLLLLLET_					0	0	0			REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1	REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.32568359375	2	520.323525	1038.6325	-0.40148	-0.0002089	0.7867	0.00040934	0.38521	0.00020043	520.3237590387133	51.719	1.387	51.719	51.286	52.673	0					80	37	4	0	0	0	0.024539	1	5518	5518		27.882	1.1893	1	1111000	+		59642	25342	41846	41909	65031	65031					0.11472657314016033
PQLLLVKT	8	Unmodified	_PQLLLVKT_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7784423828125	2	456.299853	910.585153	-0.11461	-5.2294E-05	1.6931	0.00077255	1.5785	0.00072026	456.300927256371	43.181	0.58449	43.042	42.809	43.393	-0.13929					23	15	2	0	0	0	0.027866	1	3986	3986		31.955	0	1	111230	+		59643	25846	41847	41910	65032	65032					0.1262842283365444
PQLLYKAID	9	Unmodified	_PQLLYKAID_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.290771484375	2	530.8055	1059.59645	-0.46632	-0.00024753	0.82326	0.00043699	0.35694	0.00018946	531.3088350871398	55.436	0.27102	55.28	55.059	55.331	-0.15601					13	7	3	0	0	0	0.024506	1	6094	6094		10.866	7.4555	1	129910			59644	1708	41848	41911	65033	65033					0.06903200137116983
PQLPPAHPL	9	Unmodified	_PQLPPAHPL_					0	0	0		ENST00000564629.1_1_16:31469306-31469441:-|nuORF	ENST00000564629.1_1_16:31469306-31469441:-|nuORF	ENST00000564629.1_1_16:31469306-31469441:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.28076171875	2	485.279452	968.544351	-0.21408	-0.00010389	3.753	0.0018213	3.5389	0.0017174	485.2811076077231	25.659	1.1007	25.488	24.825	25.925	-0.17078					62	27	4	0	0	0	0.70186	1	1255	1255		45.952	8.7928	1	2033200			59645	16895	41849	41912	65034	65034					0.058820815140165905
PQLRKIQRPPP	11	Unmodified	_PQLRKIQRPPP_					0	0	0		ENST00000344120.4_1_5:141693592-141693661:-|nuORF	ENST00000344120.4_1_5:141693592-141693661:-|nuORF	ENST00000344120.4_1_5:141693592-141693661:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.25341796875	3	443.941973	1328.80409	-0.21707	-9.6365E-05	1.7065	0.00075757	1.4894	0.0006612	443.9430332893533	45.433	0.83068	45.222	44.793	45.624	-0.21109					33	23	3	0	0	0	0.024792	1	4287	4287		13.508	0	1	105620			59646	12546	41850	41913	65035	65035					0.15283827125017524
PQLRKIQRPPP	11	Unmodified	_PQLRKIQRPPP_					0	0	0		ENST00000344120.4_1_5:141693592-141693661:-|nuORF	ENST00000344120.4_1_5:141693592-141693661:-|nuORF	ENST00000344120.4_1_5:141693592-141693661:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	443.941973	1328.80409	-0.27414	-0.0001217	2.8647	0.0012718	2.5906	0.0011501	443.9432192080869	45.537	0.77935	45.537	44.934	45.714	0	0.1735	0.00031867	NaN	13.508	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153580			59647	12546	41850	41913							0.15283827125017524
PQLRKIQRPPP	11	Unmodified	_PQLRKIQRPPP_					0	0	0		ENST00000344120.4_1_5:141693592-141693661:-|nuORF	ENST00000344120.4_1_5:141693592-141693661:-|nuORF	ENST00000344120.4_1_5:141693592-141693661:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	443.941973	1328.80409	-0.30777	-0.00013663	3.1022	0.0013772	2.7944	0.0012406	443.9433443069032	45.48	0.60563	45.331	45.044	45.649	-0.1488	-0.0322	0.00063501	NaN	13.508	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97667			59648	12546	41850	41913							0.15283827125017524
PQLRPRGV	8	Unmodified	_PQLRPRGV_					0	0	0		ENST00000507146.5_1_4:156680611-156696137:+|nuORF;ENST00000502959.5_1_4:156680183-156696140:+|nuORF;ENST00000505764.5_1_4:156680186-156693798:+|nuORF	ENST00000507146.5_1_4:156680611-156696137:+|nuORF	ENST00000507146.5_1_4:156680611-156696137:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2503662109375	2	461.782693	921.550834	-1.3594	-0.00062773	0.31676	0.00014627	-1.0426	-0.00048146	461.78260872069666	37.92	0.43134	37.92	37.735	38.166	0					18	12	2	0	0	0	0.027866	1	3135	3135		44.531	7.5026	1	151870			59649	15681	41851	41914	65036	65036					0.08692019465422618
PQMALEEV	8	Unmodified	_PQMALEEV_					0	0	0		nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF	nc|ENSG00000128886|Q9HB65-2|ELL3	nc|ENSG00000128886|Q9HB65-2|ELL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.7638244628906	2	458.725861	915.437169	-0.7486	-0.0003434	-1.6905	-0.00077547	-2.4391	-0.0011189	458.72467104193703	36.156	0.19944	36.156	36.029	36.229	0					8	5	2	0	0	0	0.027866	1	2837	2837		6.7355	3.3255	1	48611			59650	4318	41852	41915	65037	65037					-0.023932564825031477
PQMDVSKTKE	10	Unmodified	_PQMDVSKTKE_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.8141479492188	2	581.792263	1161.56997	0.3231	0.00018798	-0.35619	-0.00020723	-0.033084	-1.9248E-05	581.7916291409082	20.212	0.28454	20.016	19.755	20.04	-0.19577					9	5	2	0	0	0	0.03519	1	489	489		47.96	5.0953	1	59952			59651	5465	41853	41916	65038	65038					-0.004348568165141842
PQMELEEEP	9	Unmodified	_PQMELEEEP_					0	0	0			REV__ENST00000527678.1_1_17:43482043-43510162:-|nuORF	REV__ENST00000527678.1_1_17:43482043-43510162:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2803955078125	2	551.242072	1100.46959	-1.5481	-0.00085337	2.8984	0.0015977	1.3503	0.00074434	551.744902279624	36.019	0.23997	35.976	35.896	36.136	-0.042458					9	6	2	0	0	0	0.024374	1	2812	2812		40.778	7.9657	1	151650	+		59652	19161	41854	41917	65039	65039					-0.07662513870150178
PQMPTWDLT	9	Unmodified	_PQMPTWDLT_					0	0	0			REV__ENST00000464735.1_1_13:24153546-24153618:+|nuORF	REV__ENST00000464735.1_1_13:24153546-24153618:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3003540039062	2	544.757692	1087.50083	-0.93783	-0.00051089	0.50817	0.00027683	-0.42966	-0.00023406	544.7582146723005	50.565	0.33479	50.565	50.307	50.642	0					13	9	2	0	0	0	0.024427	1	5259	5259		51.335	13.524	1	125960	+		59653	32986	41855	41918	65040	65040					-0.03941896045421345
PQMRRQRRP	9	Unmodified	_PQMRRQRRP_					0	0	0			REV__ENST00000471546.5_1_2:197521843-197523543:+|nuORF	REV__ENST00000471546.5_1_2:197521843-197523543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.7987060546875	2	612.846365	1223.67818	-1.3769	-0.00084381	0.56093	0.00034377	-0.81594	-0.00050005	613.3482097449205	58.678	0.35525	58.49	58.308	58.663	-0.18795					14	8	3	0	0	0	0.024527	1	6437	6437		17.365	0	1	337910	+		59654	33179	41856	41919	65041	65041					0.07528417067965165
PQNANGLW	8	Unmodified	_PQNANGLW_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7825622558594	2	450.222134	898.429715	4.1319	0.0018603	-0.1439	-6.4785E-05	3.988	0.0017955	450.22199474088535	18.413	0.34479	18.476	18.353	18.698	0.063307					9	6	2	0	0	0	0.027866	1	262	262		4.3163	0	1	22289			59655	7225	41857	41920	65042	65042					-0.023562279679140374
PQNRNLTEY	9	Unmodified	_PQNRNLTEY_					0	0	0		DENND1A|p.E168Q|1|0.12|ENSG00000119522|chr9:123667031-123667031|C/G|missense_variant	DENND1A|p.E168Q|1|0.12|ENSG00000119522|chr9:123667031-123667031|C/G|missense_variant	DENND1A|p.E168Q|1|0.12|ENSG00000119522|chr9:123667031-123667031|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.781494140625	2	567.780544	1133.54654	4.4734	0.0025399	-1.5696	-0.00089119	2.9038	0.0016487	567.7794900159628	17.493	0.69401	17.554	17.209	17.903	0.06036					54	20	4	0	0	0	0.80658	2	147	128;147		38.806	5.9937	1	200990			59656	631	41858	41921	65043;65044	65044					-0.014895345388140413
PQPGLTAH	8	Unmodified	_PQPGLTAH_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5630187988281	2	410.719227	819.423902	-0.18165	-7.4606E-05	1.5316	0.00062906	1.35	0.00055446	410.71968452164555	32.61	0.56338	32.452	32.204	32.767	-0.15772					23	13	2	0	0	0	0.027866	1	2241	2241		21.702	0	1	592930			59657	8804	41859	41922	65045	65045					0.006966735204287033
PQPGWPLGVL	10	Unmodified	_PQPGWPLGVL_					0	0	0		ENST00000496704.1_1_2:130899553-130900555:-|nuORF	ENST00000496704.1_1_2:130899553-130900555:-|nuORF	ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7811889648438	2	532.300384	1062.58622	-0.3293	-0.00017529	3.3332	0.0017743	3.0039	0.001599	532.3024176976446	57.468	0.48976	57.266	57.172	57.662	-0.20209					20	12	2	0	0	0	0.03519	1	6271	6271		29.15	0	1	722680			59658	15572	41860	41923	65046	65046					0.05742637202570222
PQPHRLQW	8	Unmodified	_PQPHRLQW_					0	0	0		ENST00000374409.5_1_1:24684664-24685051:-|nuORF	ENST00000374409.5_1_1:24684664-24685051:-|nuORF	ENST00000374409.5_1_1:24684664-24685051:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.3004760742188	2	531.2856	1060.55665	-1.2812	-0.00068069	-3.982	-0.0021156	-5.2632	-0.0027963	531.2836676447896	30.046	0.45738	30.12	29.838	30.296	0.074316					24	10	3	0	0	0	0.027866	1	1829	1829		28.254	0	1	127710			59659	13113	41861	41924	65047	65047					0.028791179770905728
PQPIHMHFCAF	11	Unmodified	_PQPIHMHFCAF_					0	0	0		ENST00000591584.1_1_17:40925493-40926039:+|nuORF	ENST00000591584.1_1_17:40925493-40926039:+|nuORF	ENST00000591584.1_1_17:40925493-40926039:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.18865966796875	3	443.207333	1326.60017	-0.2217	-9.826E-05	-0.94084	-0.00041699	-1.1625	-0.00051525	443.2069768408765	33.236	0.55407	33.036	32.771	33.325	-0.20019					23	13	2	0	0	0	0.024735	1	2369	2369		25.126	0	1	547400			59660	17358	41862	41925	65048	65048					-0.05006776632308174
PQPISRFL	8	Unmodified	_PQPISRFL_					0	0	0			REV__ENSG00000129250|ENST00000320785|KIF1C	REV__ENSG00000129250|ENST00000320785|KIF1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27764892578125	2	479.279452	956.544351	0.70365	0.00033725	-3.7472	-0.001796	-3.0436	-0.0014587	479.27737502520233	96.231	2.3544	96.108	95.378	97.732	-0.12305					131	53	5	0	0	0	1.0009	1	11916	11916		37.159	7.9891	1	1695100	+		59661	23040	41863	41926	65049	65049					0.0643408151404401
PQPKKPEDEPQ	11	Unmodified	_PQPKKPEDEPQ_					0	0	0		nc|ENSG00000107593|Q9P0L9-4|PKD2L1;PKD2L1|p.R697Efs*28|1|0.24|ENSG00000107593|chr10:100290439-100290439|G/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.23486328125	3	431.55422	1291.64083	-0.3869	-0.00016697	0.91717	0.00039581	0.53026	0.00022884	431.5547320034013	35.879	0.44569	35.673	35.306	35.752	-0.20518					15	11	2	0	0	0	0.024723	1	2750	2750		4.6433	3.8344	1	297390			59662	2845	41864	41927	65050	65050					0.006675594926718986
PQPLLQHPQ	9	Unmodified	_PQPLLQHPQ_					0	0	0			REV__nc|ENSG00000134686|Q8IXK0-4|PHC2	REV__nc|ENSG00000134686|Q8IXK0-4|PHC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.814208984375	2	529.293091	1056.57163	-0.63293	-0.00033501	-2.1697	-0.0011484	-2.8027	-0.0014834	529.2917417789021	26.562	0.67017	26.643	26.29	26.96	0.081293					42	14	4	0	0	0	0.024506	1	1336	1336		10.866	4.9445	1	729670	+		59663	23471	41865	41928	65051	65051					0.04560565054430299
PQPLLYGPM	9	Unmodified	_PQPLLYGPM_					0	0	0			REV__ENST00000380599.8_1_17:7369222-7369633:-|nuORF	REV__ENST00000380599.8_1_17:7369222-7369633:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7666931152344	2	508.267696	1014.52084	1.2998	0.00066065	0.70398	0.00035781	2.0038	0.0010185	508.267797718394	17.444	0.34923	17.29	17.108	17.458	-0.15403					12	6	3	0	0	0	0.024466	1	179	179		33.516	17.042	1	67563	+		59664	31484	41866	41929	65052	65052					0.014158996852074779
PQPLNKAR	8	Unmodified	_PQPLNKAR_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2873840332031	2	462.274701	922.534849	0.19716	9.1141E-05	0.53659	0.00024805	0.73375	0.00033919	462.2751397574102	52.833	0.2667	52.686	52.569	52.835	-0.14723					11	6	3	0	0	0	0.027866	1	5647	5647		18.324	4.1873	1	271700	+		59665	23162	41867	41930	65053	65053					0.070483132285176
PQPLSQALPQL	11	Unmodified	_PQPLSQALPQL_					0	0	0		ENSG00000269858|ENST00000303961|EGLN2	ENSG00000269858|ENST00000303961|EGLN2	ENSG00000269858|ENST00000303961|EGLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.3218994140625	2	596.340238	1190.66592	-0.47999	-0.00028624	-0.77273	-0.00046081	-1.2527	-0.00074705	596.3403874975733	50.593	0.2239	50.313	50.108	50.332	-0.27977					9	5	2	0	0	0	0.024741	1	5116	5116		37.812	1.3648	1	92828			59666	10999	41868	41931	65054	65054					0.07821659085880128
PQPPLNDL	8	Unmodified	_PQPPLNDL_					0	0	0		nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.2400207519531	2	447.239993	892.465432	0.73582	0.00032909	-1.168	-0.00052237	-0.43218	-0.00019329	447.23946512203395	54.505	1.7715	54.299	53.947	55.718	-0.20613					121	48	4	0	0	0	0.71833	1	5782	5782		65.803	0	1	30226000			59667	18035	41869	41932	65055	65055					0.014898094890781977
PQPPRGQPK	9	Unmodified	_PQPPRGQPK_					0	0	0		nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3;ENSG00000119977|ENST00000371217|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7790832519531	2	502.785433	1003.55631	-1.185	-0.00059578	-0.61964	-0.00031155	-1.8046	-0.00090733	502.7850613206002	24.394	0.53231	24.347	24	24.533	-0.047148					17	10	2	0	0	0	0.024427	1	1001	1001		34.173	0	1	166390			59668	3783	41870	41933	65056	65056					0.05467698257234588
PQPQTQPPPTQ	11	Unmodified	_PQPQTQPPPTQ_					0	0	0		ZNF462-RAD23B|1|fusion;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	ZNF462-RAD23B|1|fusion	ZNF462-RAD23B|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.8999938964844	3	406.875293	1217.60405	1.7167	0.00069849	4.4476	0.0018096	6.1644	0.0025081	406.8774532838835	23.654	0.84844	23.463	23.079	23.928	-0.19117					32	19	2	0	0	0	0.024734	1	947	947		21.78	4.6137	1	125410			59669	38192	41871	41934	65057	65057					0.003953076667585265
PQPRKIICM	9	Oxidation (M)	_PQPRKIICM(Oxidation (M))_		PQPRKIICM(1)		PQPRKIICM(66)	0	0	1		ENSG00000174776|ENST00000682715|WDR49	ENSG00000174776|ENST00000682715|WDR49	ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2998046875	2	551.299004	1100.58346	-0.87603	-0.00048296	2.1626	0.0011922	1.2866	0.00070929	551.3001695358757	26.449	1.9312	26.426	25.091	27.022	-0.023088					128	46	5	0	0	0	0.40179	1	1334	1334		65.803	11.027	1	4290100			59670	8495	41872	41935	65058	65058		353			0.037187224817444076
PQPRKKATD	9	Unmodified	_PQPRKKATD_					0	0	0		MAGEC3|p.P422Lfs*62|1|0.42|ENSG00000165509|chrX:141897020-141897020|C/-|frameshift_variant;ENSG00000165509|ENST00000298296|MAGEC3	MAGEC3|p.P422Lfs*62|1|0.42|ENSG00000165509|chrX:141897020-141897020|C/-|frameshift_variant	MAGEC3|p.P422Lfs*62|1|0.42|ENSG00000165509|chrX:141897020-141897020|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2618408203125	2	520.795998	1039.57744	-0.47832	-0.00024911	0.44461	0.00023155	-0.033716	-1.7559E-05	520.7960190636819	22.395	0.88418	22.319	22.082	22.966	-0.075294					34	18	2	0	0	0	0.024457	1	829	829		21.96	0	1	78410			59671	7423	41873	41936	65059	65059					0.05923663566090909
PQPSPLRVLL	10	Unmodified	_PQPSPLRVLL_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN;ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	nc|ENSG00000157766|P16112-3|ACAN;ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	nc|ENSG00000157766|P16112-3|ACAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.349365234375	2	560.347866	1118.68118	-0.034242	-1.9187E-05	2.7243	0.0015265	2.69	0.0015073	560.3494057075354	106.07	0.48589	106.07	105.81	106.3	0.00014496					46	18	3	0	0	0	1.0344	1	13552	13552		41.427	11.109	1	450830			59672	6621;14	41874	41937	65060	65060					0.1265857067376146
PQQILPPSI	9	Unmodified	_PQQILPPSI_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.79217529296875	2	496.792392	991.570232	0.95875	0.0004763	-1.0677	-0.00053045	-0.109	-5.415E-05	496.7918191905324	71.178	1.0514	71.178	70.744	71.795	0					55	26	4	0	0	0	0.39228	1	8628	8628		66.429	7.6473	1	2499300	+		59673	27472	41875	41938	65061	65061					0.07410930965670559
PQQLPLFH	8	Unmodified	_PQQLPLFH_					0	0	0		ENST00000538079.1_1_12:6882155-6887174:+|nuORF	ENST00000538079.1_1_12:6882155-6887174:+|nuORF	ENST00000538079.1_1_12:6882155-6887174:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.31854248046875	2	490.271627	978.528701	-0.01213	-5.947E-06	-4.1147	-0.0020173	-4.1268	-0.0020233	490.2695457725095	29.276	0.46164	29.127	28.956	29.418	-0.14952					15	10	2	0	0	0	0.027866	1	1779	1779		29.842	5.3375	1	166550			59674	16387	41876	41939	65062	65062					0.03857794996986286
PQQLQNYWSEV	11	Unmodified	_PQQLQNYWSEV_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.31494140625	3	464.557853	1390.65173	-0.34292	-0.00015931	-2.9192	-0.0013562	-3.2622	-0.0015155	464.5564420923347	47.926	0.37189	47.828	47.667	48.039	-0.097549					22	9	3	0	0	0	0.024856	1	4704	4704		18.531	13.888	1	214010			59675	4100	41877	41940	65063	65063					-0.0279703813305332
PQQPLCPCF	9	Unmodified	_PQQPLCPCF_					0	0	0			REV__ENST00000535977.5_1_16:678431-678971:+|nuORF	REV__ENST00000535977.5_1_16:678431-678971:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2927856445312	2	516.735706	1031.45686	-0.90498	-0.00046763	-4.0195	-0.002077	-4.9245	-0.0025447	516.7340144443752	31.981	0.74837	32.047	31.683	32.432	0.066093					41	18	3	0	0	0	0.024443	1	2130	2130		35.201	2.3883	1	506590	+		59676	34683	41878	41941	65064	65064					-0.05761203743418264
PQREPLED	8	Unmodified	_PQREPLED_					0	0	0			REV__ENST00000554163.5_1_14:54948056-54950476:-|nuORF	REV__ENST00000554163.5_1_14:54948056-54950476:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7774353027344	2	492.243264	982.471974	-1.0332	-0.00050859	1.5271	0.00075169	0.49386	0.0002431	492.24367515556224	36.159	0.79435	36.116	35.896	36.69	-0.042458					44	21	3	0	0	0	0.027866	1	2883	2883		57.811	4.4598	1	941200	+		59677	34984	41879	41942	65065	65065					-0.01996297350194709
PQRGLLEAR	9	Unmodified	_PQRGLLEAR_					0	0	0			REV__ENSG00000120071|ENST00000432791|KANSL1	REV__ENSG00000120071|ENST00000432791|KANSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.3048706054688	2	520.30399	1038.59343	0.41563	0.00021626	1.7316	0.00090097	2.1473	0.0011172	520.304800388179	93.554	0.91519	93.432	92.971	93.886	-0.12215					61	20	4	0	0	0	0.57016	1	11508	11508		54.722	5.5116	1	1813800	+		59678	22512	41880	41943	65066	65066					0.0756736980297319
PQRHSGRVVG	10	Unmodified	_PQRHSGRVVG_					0	0	0		ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	ENSG00000160111|ENST00000443236|CPAMD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.32763671875	2	546.804688	1091.59482	-1.0172	-0.0005562	3.5289	0.0019296	2.5117	0.0013734	546.8063796458185	57.094	0.44791	57.19	56.945	57.392	0.09531					28	11	3	0	0	0	0.03519	1	6348	6348		24.519	0	1	750440			59679	6781	41881	41944	65067	65067					0.0526900389174898
PQRIPPEMS	9	Unmodified	_PQRIPPEMS_					0	0	0		nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-3|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.7706298828125	2	527.771134	1053.52771	-0.91577	-0.00048331	1.3964	0.00073699	0.48065	0.00025367	527.7717373708812	48.156	0.65978	48.003	47.669	48.329	-0.153					51	19	3	0	0	0	0.6504	1	4846	4846		49.442	10.635	1	12031000			59680	18767	41882	41945	65068	65068					0.003092125657985889
PQRKENRA	8	Unmodified	_PQRKENRA_					0	0	0		ENST00000586659.5_1_19:11275916-11276213:-|nuORF	ENST00000586659.5_1_19:11275916-11276213:-|nuORF	ENST00000586659.5_1_19:11275916-11276213:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7795104980469	2	499.778139	997.541725	0.096678	4.8317E-05	4.0168	0.0020075	4.1135	0.0020558	499.7798017173027	32.623	0.90079	32.686	32.315	33.216	0.062885					99	23	6	0	0	0	0.845	1	2219	2219		55.504	7.5886	1	3514200			59681	17250	41883	41946	65069	65069					0.04285626109083296
PQRLIDHIR	9	Unmodified	_PQRLIDHIR_					0	0	0		ENSG00000162885|ENST00000366600|B3GALNT2	ENSG00000162885|ENST00000366600|B3GALNT2	ENSG00000162885|ENST00000366600|B3GALNT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.7747802734375	2	574.338364	1146.66217	0.024668	1.4168E-05	-0.49962	-0.00028695	-0.47496	-0.00027279	574.3374733500493	34.583	0.31981	34.359	34.179	34.499	-0.22412					10	7	2	0	0	0	0.024495	1	2576	2576		26.693	0	1	55919			59682	7006	41884	41947	65070	65070					0.0947103410269392
PQRLLEVRG	9	Unmodified	_PQRLLEVRG_					0	0	0		ENSG00000133119|ENST00000380071|RFC3;nc|ENSG00000133119|P40938-2|RFC3	ENSG00000133119|ENST00000380071|RFC3	ENSG00000133119|ENST00000380071|RFC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7742309570312	2	534.31964	1066.62473	-0.45582	-0.00024355	3.7084	0.0019815	3.2526	0.0017379	534.3214747974251	50.58	0.46356	50.431	50.193	50.657	-0.14916					21	13	2	0	0	0	0.024209	1	5319	5319		56.721	6.6875	1	268380			59683	4687	41885	41948	65071	65071					0.0940794283710602
PQRLMGHV	8	Unmodified	_PQRLMGHV_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7381896972656	2	469.255454	936.496355	-0.16615	-7.7967E-05	1.7891	0.00083956	1.623	0.0007616	469.25598954559143	22.917	0.27663	22.917	22.803	23.079	0					8	5	2	0	0	0	0.027866	1	848	848		28.254	0	1	15117	+		59684	25052	41886	41949	65072	65072					0.0255668432236007
PQRLQWDL	8	Unmodified	_PQRLQWDL_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2830200195312	2	528.285266	1054.55598	-0.38787	-0.00020491	-3.6764	-0.0019422	-4.0643	-0.0021471	528.2831978150431	23.324	0.62216	23.4	23.156	23.778	0.076241					33	14	3	0	0	0	0.87148	1	865	865		53.351	2.016	1	693250			59685	7908	41887	41950	65073	65073					0.0308827853737057
PQRLQWDL	8	Unmodified	_PQRLQWDL_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.285266	1054.55598	-1.0881	-0.00057485	-3.0721	-0.0016229	-4.1602	-0.0021978	528.2835265331754	23.49	0.53152	23.49	23.206	23.737	0	0.05988	0.00031402	NaN	53.351	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	661380			59686	7908	41887	41950							0.0308827853737057
PQRLQWDL	8	Unmodified	_PQRLQWDL_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.285266	1054.55598	-0.53273	-0.00028144	-4.1007	-0.0021663	-4.6334	-0.0024478	528.2830307758155	23.607	0.24444	23.427	23.318	23.563	-0.17989	-0.003093	-0.0007728	NaN	53.351	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38444			59687	7908	41887	41950							0.0308827853737057
PQRLVPQSL	9	Unmodified	_PQRLVPQSL_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.3082275390625	2	519.308741	1036.60293	-0.20804	-0.00010804	-0.65153	-0.00033835	-0.85957	-0.00044638	519.3083193963904	49.076	0.93576	49.076	48.795	49.731	0					66	25	4	0	0	0	0.096521	2	5068	5042;5068		111.65	27.429	1	7141900	+		59688	27701	41888	41951	65074;65075	65075					0.08609138088513646
PQRLVPQSL	9	Unmodified	_PQRLVPQSL_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.3075561523438	2	519.308741	1036.60293	-0.34532	-0.00017933	-0.57083	-0.00029644	-0.91615	-0.00047577	519.3083780795426	49.32	1.2674	49.167	48.829	50.097	-0.15277					74	34	4	0	0	0	0.12602	1	5050	5050		104.75	30.492	1	6730200	+		59689	27701	41888	41951	65076	65076					0.08609138088513646
PQRLVPQSL	9	Unmodified	_PQRLVPQSL_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.3076782226562	2	519.308741	1036.60293	-1.4697	-0.00076322	0.62143	0.00032271	-0.84826	-0.00044051	519.3089843045811	49.014	1.1054	49.088	48.772	49.877	0.074192					71	29	4	0	0	0	0.29158	1	4961	4961		76.774	11.309	1	6039000	+		59690	27701	41888	41951	65077	65077					0.08609138088513646
PQRNRSVSI	9	Unmodified	_PQRNRSVSI_					0	0	0			REV__ENSG00000137501|ENST00000359152|SYTL2	REV__ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2828979492188	2	528.799072	1055.58359	-0.85905	-0.00045426	1.008	0.00053304	0.14898	7.8781E-05	528.7992430432688	23.414	0.67011	23.353	22.844	23.514	-0.060862					21	15	2	0	0	0	0.024427	1	923	923		42.396	15.6	1	94840	+		59691	23763	41889	41952	65078	65078					0.05802181797616868
PQRPVHGL	8	Unmodified	_PQRPVHGL_					0	0	0		nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;ENST00000604566.1_1_1:3644156-3648116:+|nuORF	nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000078900|O15350-10|TP73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.77734375	2	452.261594	902.508634	0.49709	0.00022482	-1.0074	-0.00045563	-0.51035	-0.00023081	452.2611056332712	40.781	0.60205	40.781	40.551	41.153	0					35	16	3	0	0	0	0.027866	1	3675	3675		35.201	0	1	257730			59692	18090	41890	41953	65079	65079					0.05348044057052448
PQRPVHGL	8	Unmodified	_PQRPVHGL_					0	0	0		nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;ENST00000604566.1_1_1:3644156-3648116:+|nuORF	nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000078900|O15350-10|TP73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.77734375	2	452.261594	902.508634	0.50813	0.00022981	-1.5738	-0.00071176	-1.0657	-0.00048195	452.26069217577736	41.452	0.84892	41.452	40.944	41.793	0					48	23	3	0	0	0	0.027866	1	3675	3675		35.201	0	1	810800			59693	18090	41890	41953	65080	65080					0.05348044057052448
PQRQGPLV	8	Unmodified	_PQRQGPLV_					0	0	0			REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF	REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.7615966796875	2	447.761426	893.5083	-0.20697	-9.2675E-05	0.29015	0.00012992	0.083171	3.7241E-05	447.76142034866785	25.436	0.542	25.265	25.039	25.581	-0.17078					34	12	4	0	0	0	1.0133	1	1201	1201		35.201	4.6971	1	1118700	+		59694	33128	41891	41954	65081	65081					0.05728624337189103
PQRQSKLA	8	Unmodified	_PQRQSKLA_					0	0	0			REV__ENSG00000079335|ENST00000336454|CDC14A	REV__ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2722473144531	2	464.272158	926.529764	-0.11763	-5.4612E-05	-0.53979	-0.00025061	-0.65742	-0.00030522	464.27202017286174	19.59	0.96406	19.471	19.2	20.164	-0.11872					57	19	5	0	0	0	0.88442	1	404	404		52.299	1.1065	1	6839000	+		59695	20634	41892	41955	65082	65082					0.06356009365890714
PQSALPQGQS	10	Unmodified	_PQSALPQGQS_					0	0	0			REV__nc|ENSG00000125740|P53539-11|FOSB	REV__nc|ENSG00000125740|P53539-11|FOSB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2723083496094	2	506.756538	1011.49852	-1.2159	-0.00061618	3.0274	0.0015342	1.8115	0.00091798	507.26040409555355	24.437	0.31044	24.39	24.177	24.487	-0.047146					10	6	2	0	0	0	0.03519	1	1060	1060		30.318	0	1	23538	+		59696	22838	41893	41956	65083	65083					-0.006766084588434751
PQSIDWIK	8	Unmodified	_PQSIDWIK_					0	0	0			REV__nc|ENSG00000140332|Q04726-2|TLE3	REV__nc|ENSG00000140332|Q04726-2|TLE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.78509521484375	2	493.768917	985.523281	-0.31378	-0.00015493	-3.0113	-0.0014869	-3.3251	-0.0016418	493.7675193342243	25.867	0.67644	25.867	25.527	26.203	0					21	15	2	0	0	0	0.027866	1	1229	1229		79.713	0	1	60389	+		59697	24005	41894	41957	65084	65084					0.0299407141451411
PQSIIPPV	8	Unmodified	_PQSIIPPV_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.8902282714844	2	425.755278	849.496004	1.1955	0.000509	-4.306	-0.0018333	-3.1105	-0.0013243	425.75337131992285	20.534	0.63935	20.603	20.366	21.005	0.068901					15	12	2	0	0	0	0.027866	1	496	496		20.482	0	1	12979			59698	1240	41895	41958	65085	65085					0.06523587874141867
PQSLNSFHSNL	11	Unmodified	_PQSLNSFHSNL_					0	0	0			REV__ENSG00000109832|ENST00000263576|DDX25	REV__ENSG00000109832|ENST00000263576|DDX25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2406005859375	3	415.207043	1242.5993	-0.457	-0.00018975	-1.3655	-0.00056696	-1.8225	-0.00075671	415.20643929203186	33.992	0.71367	34.043	33.804	34.518	0.050251					37	17	3	0	0	0	0.024759	1	2453	2453		17.833	11.174	1	342510	+		59699	21820	41896	41959	65086	65086					-0.012295764759983285
PQSPNAPLKS	10	Unmodified	_PQSPNAPLKS_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3081665039062	2	519.782556	1037.55056	-1.7198	-0.0008939	2.419	0.0012574	0.69928	0.00036347	519.7838444709568	49.156	0.48068	49.231	49.022	49.503	0.074192					24	12	3	0	0	0	0.03519	1	4999	4999		42.864	2.0861	1	237980	+		59700	27880	41897	41960	65087	65087					0.033285549548736526
PQSPPRTRES	10	Unmodified	_PQSPPRTRES_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2821655273438	2	577.799269	1153.58398	0.62567	0.00036151	-4.131	-0.0023869	-3.5054	-0.0020254	577.7970139386722	51.201	0.61736	51.021	50.76	51.378	-0.18071					21	15	2	0	0	0	0.03519	1	5227	5227		26.693	0	1	148050			59701	6803	41898	41961	65088	65088					0.013335567268086379
PQSQPQPQPQ	10	Unmodified	_PQSQPQPQPQ_					0	0	0		ENSG00000139289|ENST00000266671|PHLDA1	REV__ENSG00000139289|ENST00000266671|PHLDA1	REV__ENSG00000139289|ENST00000266671|PHLDA1	MSMS	OPSCC_39_ClassI_Rep-2	2	567.7816162109375	2	567.780544	1133.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.543	1	17.4	16.9	17.9	-0.14278								0	0	0	0.75873	1	170	170		47.657	5.2612	1				59702	5320	41899	41962	65089	65089					-0.014895345388140413
PQSRKVEEP	9	Unmodified	_PQSRKVEEP_					0	0	0			REV__nc|ENSG00000141738|Q14451-2|GRB7	REV__nc|ENSG00000141738|Q14451-2|GRB7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.80859375	2	535.285463	1068.55637	-0.89781	-0.00048059	-1.6718	-0.00089491	-2.5696	-0.0013755	535.7864578167145	85.061	0.37097	85.004	84.774	85.145	-0.05761					11	8	2	0	0	0	0.024209	1	10632	10632		47.657	9.8458	1	86693	+		59703	24119	41900	41963	65090	65090					0.024836534665837462
PQTELLVGSV	10	Unmodified	_PQTELLVGSV_					0	0	0			REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4	REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7926025390625	2	521.792589	1041.57063	-0.35383	-0.00018462	0.53488	0.0002791	0.18105	9.4471E-05	521.7928790990622	45.058	0.65354	45.102	44.858	45.512	0.043877					56	18	4	0	0	0	0.60734	1	4296	4296		76.17	5.3535	1	2675200	+		59704	25581	41901	41964	65091	65091					0.0515030589485832
PQTELSFF	8	Unmodified	_PQTELSFF_					0	0	0			REV__ENST00000248450.8_1_2:219128952-219129252:-|nuORF	REV__ENST00000248450.8_1_2:219128952-219129252:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2737731933594	2	484.739825	967.465098	-0.2444	-0.00011847	3.9395	0.0019096	3.6951	0.0017912	484.74163682107127	71.01	1.9097	71.02	70.422	72.332	0.010735					68	48	2	0	0	0	0.027866	1	8580	8580		12.207	0	1	354160	+		59705	29482	41902	41965	65092	65092					-0.01993610230761078
PQTEQQLRKLL	11	Unmodified	_PQTEQQLRKLL_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9327087402344	3	451.933143	1352.7776	0.91985	0.00041571	-2.0117	-0.00090914	-1.0918	-0.00049343	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0699	1	12312	12312		19.627	1.2953	1	1435400	+		59706	22018	41903	41966	65093	65093					0.11532093443042868
PQTFRDAQL	9	Unmodified	_PQTFRDAQL_					0	0	0			REV__ENST00000316610.6_1_5:89770075-89770327:-|nuORF	REV__ENST00000316610.6_1_5:89770075-89770327:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2753295898438	2	538.28018	1074.54581	-0.25768	-0.00013871	-2.3606	-0.0012707	-2.6183	-0.0014094	538.7825779485376	57.577	1.0062	57.402	57.072	58.078	-0.1749					45	26	2	0	0	0	0.23085	1	6491	6491		84.916	2.6105	1	5782800	+		59707	30282	41904	41967	65094	65094					0.011516708121462216
PQTFRTPLI	9	Unmodified	_PQTFRTPLI_					0	0	0		ENST00000355472.9_1_5:176869404-176869623:+|nuORF	ENST00000355472.9_1_5:176869404-176869623:+|nuORF	ENST00000355472.9_1_5:176869404-176869623:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3421020507812	2	536.811116	1071.60768	-0.89211	-0.00047889	-3.1447	-0.0016881	-4.0368	-0.002167	536.8093585168336	26.92	0.40466	26.907	26.662	27.067	-0.012983					20	9	3	0	0	0	0.024506	1	1417	1417		16.473	0	1	144590			59708	12648	41905	41968	65095	65095					0.07474022231281197
PQTFRTPLI	9	Unmodified	_PQTFRTPLI_					0	0	0		ENST00000355472.9_1_5:176869404-176869623:+|nuORF	ENST00000355472.9_1_5:176869404-176869623:+|nuORF	ENST00000355472.9_1_5:176869404-176869623:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3424682617188	2	536.811116	1071.60768	-1.459	-0.0007832	-2.3907	-0.0012834	-3.8497	-0.0020666	536.809750122681	26.715	0.55015	26.797	26.586	27.136	0.081293					23	13	2	0	0	0	0.024506	1	1378	1378		23.042	0	1	127700			59709	12648	41905	41968	65096	65096					0.07474022231281197
PQTGRTGY	8	Unmodified	_PQTGRTGY_					0	0	0		ENST00000379047.7_1_16:69760411-69760540:-|nuORF	ENST00000379047.7_1_16:69760411-69760540:-|nuORF	ENST00000379047.7_1_16:69760411-69760540:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.2198486328125	2	440.219591	878.42463	0.29139	0.00012827	0.042228	1.859E-05	0.33362	0.00014686	440.2194844822438	25.947	1.3983	26.027	25.664	27.062	0.08009					98	33	4	0	0	0	0.96719	1	1237	1237		42.474	3.6683	1	2820800			59710	13253	41906	41969	65097	65097					-0.01944531830520191
PQTMKRLS	8	Unmodified	_PQTMKRLS_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.80059814453125	2	480.768394	959.522236	0.24744	0.00011896	-3.3349	-0.0016033	-3.0874	-0.0014843	480.7671810616412	94.362	0.2403	94.24	94.099	94.34	-0.12215					7	5	2	0	0	0	0.027866	1	11619	11619		35.618	2.1027	1	55634			59711	4536	41907	41970	65098	65098					0.04085533773968564
PQTNLIGSN	9	Unmodified	_PQTNLIGSN_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2878112792969	2	472.245806	942.47706	0.12935	6.1085E-05	2.4497	0.0011569	2.5791	0.001218	472.248194336864	94.083	0.238	94.083	93.951	94.189	-0.00022888					6	5	2	0	0	0	0.024359	1	11919	11919		32.751	0	1	68359	+		59712	26467	41908	41971	65099	65099					0.003520065124348548
PQTNQLETG	9	Unmodified	_PQTNQLETG_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ZBTB20|p.P692Lfs*43|2|0.29|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.3007507324219	2	494.240721	986.466889	0.82248	0.0004065	2.7466	0.0013575	3.5691	0.001764	494.24073175231854	96.219	0.4959	96.096	95.813	96.309	-0.12305					18	11	3	0	0	0	0.024367	1	11901	11901		44.377	12.847	1	93885			59713	9063	41909	41972	65100	65100					-0.02688601212798858
PQTNQLETG	9	Unmodified	_PQTNQLETG_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ZBTB20|p.P692Lfs*43|2|0.29|ENSG00000181722|chr3:114339156-114339156|G/-|frameshift_variant;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.240721	986.466889	0.053378	2.6382E-05	9.7649	0.0048262	9.8183	0.0048526	494.2460789593618	96.259	0.28832	96.122	95.894	96.183	-0.1367	0.013221	0.0035198	NaN	44.377	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85542			59714	9063	41909	41972							-0.02688601212798858
PQTPRVVRQI	10	Unmodified	_PQTPRVVRQI_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.3592529296875	2	597.359296	1192.70404	0.26733	0.00015969	-1.1499	-0.00068693	-0.88261	-0.00052723	597.3584820835335	98.719	1.4456	98.583	98.147	99.592	-0.13625					99	34	4	0	0	0	1.1266	1	12223	12223		29.17	1.2878	1	2905600			59715	10895	41910	41973	65101	65101					0.11539589791209437
PQTSVNWF	8	Unmodified	_PQTSVNWF_					0	0	0			REV__ENSG00000177992|ENST00000325643|SPATA31E1	REV__ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7825622558594	2	489.737617	977.460681	-0.81975	-0.00040146	0.80334	0.00039343	-0.016407	-8.0351E-06	489.7379117631344	36.332	0.65282	36.29	35.996	36.649	-0.042454					29	17	2	0	0	0	0.027866	1	2865	2865		26.796	0	1	162920	+		59716	27156	41911	41974	65102	65102					-0.028950746536679617
PQVGLLPGV	9	Unmodified	_PQVGLLPGV_					0	0	0			REV__ENSG00000185670|ENST00000394807|ZBTB3	REV__ENSG00000185670|ENST00000394807|ZBTB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.75262451171875	2	440.268553	878.522553	-0.093941	-4.1359E-05	-3.6205	-0.001594	-3.7145	-0.0016354	440.2670359854153	23.758	0.39732	23.556	23.438	23.835	-0.20193					13	8	2	0	0	0	0.024412	1	962	962		31.955	5.1588	1	24322	+		59717	27783	41912	41975	65103	65103					0.07843276765481733
PQVQRICD	8	Unmodified	_PQVQRICD_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7545166015625	2	479.742376	957.4702	-0.15747	-7.5545E-05	-1.5186	-0.00072852	-1.676	-0.00080407	479.74187392041637	33.643	0.34637	33.65	33.534	33.881	0.0066261					12	8	2	0	0	0	0.027866	1	2425	2425		17.365	0	1	78342	+		59718	26394	41913	41976	65104	65104					-0.010236296398034028
PQVSGGTISH	10	Unmodified	_PQVSGGTISH_					0	0	0		ENST00000374505.6_1_1:24120901-24121159:+|nuORF	ENST00000374505.6_1_1:24120901-24121159:+|nuORF	ENST00000374505.6_1_1:24120901-24121159:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.8034973144531	2	491.751256	981.487959	-0.6258	-0.00030774	0.54598	0.00026849	-0.079818	-3.9251E-05	491.75144177097604	35.489	0.64903	35.489	35.2	35.849	0					37	16	3	0	0	0	0.03519	1	2739	2739		49.536	13.918	1	718850			59719	13119	41914	41977	65105	65105					-0.0035259111326695347
PQVTLNVTFKN	11	Unmodified	_PQVTLNVTFKN_					0	0	0		ENSG00000188554|ENST00000590996|NBR1;nc|ENSG00000188554|Q14596-2|NBR1;ENST00000592304.1_1_17:41323316-41327951:+|nuORF	ENSG00000188554|ENST00000590996|NBR1	ENSG00000188554|ENST00000590996|NBR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.9026184082031	3	420.903072	1259.68739	0.031902	1.3428E-05	-1.7307	-0.00072848	-1.6988	-0.00071505	420.90228565022244	110.14	0.70747	110.02	109.81	110.51	-0.12525					69	26	4	0	0	0	1.044	1	13535	13535		26.75	5.7175	1	461840			59720	9728	41915	41978	65106	65106					0.06793044114624536
PQVVAKIPK	9	Unmodified	_PQVVAKIPK_					0	0	0		nc|ENSG00000170419|Q8TAG5|VSTM2A;ENSG00000170419|ENST00000402613|VSTM2A;nc|ENSG00000170419|Q8TAG5-2|VSTM2A	nc|ENSG00000170419|Q8TAG5|VSTM2A	nc|ENSG00000170419|Q8TAG5|VSTM2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.80242919921875	2	490.318577	978.622602	0.61533	0.00030171	-0.87856	-0.00043077	-0.26322	-0.00012906	490.31801645109937	25.325	0.58509	25.154	24.821	25.406	-0.17151					29	13	3	0	0	0	0.024292	1	1126	1126		32.812	3.6629	1	417110			59721	8038	41916	41979	65107	65107					0.1324351409926976
PQWQKLVT	8	Unmodified	_PQWQKLVT_					0	0	0			REV__HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|31|3|anti-sense	REV__HERVH-int_dup114|chr1:68389804-68390303:+|3.324957290818124|0.0397499011603981|6.39|475.0|31|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8212585449219	2	500.284734	998.554916	-1.0513	-0.00052596	-2.9518	-0.0014767	-4.0031	-0.0020027	500.28313620649897	39.745	0.76759	39.632	39.327	40.095	-0.11223					43	20	3	0	0	0	0.027866	1	3399	3399		24.203	0	1	1060700	+		59722	36109	41917	41980	65108	65108					0.055580641684855436
PQWRARRWRWW	11	Unmodified	_PQWRARRWRWW_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.8287353515625	3	561.967515	1682.88072	-0.63308	-0.00035577	-3.3465	-0.0018806	-3.9796	-0.0022364	562.2998387199403	43.5	0.84057	43.263	42.917	43.758	-0.23737					54	22	4	0	0	0	0.024902	1	4049	4049		0.3405	0	1	471400	+		59723	36928	41918	41981	65109	65109					0.06659063464871906
PQWRARRWRWW	11	Unmodified	_PQWRARRWRWW_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.829345703125	3	561.967515	1682.88072	-1.0416	-0.00058533	-3.0668	-0.0017234	-4.1083	-0.0023087	562.3000873342407	43.543	0.82969	43.322	42.878	43.707	-0.22127					56	22	4	0	0	0	0.024902	1	4033	4033		1.4188	1.1065	1	476770	+		59724	36928	41918	41981	65110	65110					0.06659063464871906
PQWVMFPF	8	Unmodified	_PQWVMFPF_					0	0	0		chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|2	chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|2	chr5:90822097-90965415|211|21.16|0.18|6.88|+|1|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7953491210938	2	526.257131	1050.49971	-0.80836	-0.0004254	-0.83619	-0.00044005	-1.6446	-0.00086546	526.2565752010436	51.72	0.73902	51.807	51.577	52.316	0.087009					36	19	3	0	0	0	0.027866	1	5480	5480		20.482	0	1	754510			59725	406	41919	41982	65111	65111					-0.02352065623654198
PQYKLTVE	8	Unmodified	_PQYKLTVE_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.26861572265625	2	489.26875	976.522947	-0.23171	-0.00011337	-0.22409	-0.00010964	-0.4558	-0.00022301	489.268588081143	41.562	1.4594	41.334	40.966	42.426	-0.2278					93	38	4	0	0	0	0.80469	1	3689	3689		58.782	2.0609	1	9281200			59726	17536	41920	41983	65112	65112					0.033746516946507654
PQYLQSGP	8	Unmodified	_PQYLQSGP_					0	0	0		nc|ENSG00000111087|P08151-2|GLI1;ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-3|GLI1	nc|ENSG00000111087|P08151-2|GLI1	nc|ENSG00000111087|P08151-2|GLI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2875061035156	2	445.224342	888.434132	0.024179	1.0765E-05	4.0257	0.0017924	4.0499	0.0018031	445.2260307509764	18.199	0.5448	17.996	17.816	18.361	-0.20371					22	10	3	0	0	0	0.027866	1	267	267		38.806	25.847	1	41617			59727	3087	41921	41984	65113	65113					-0.014547635449957852
PQYRQKIL	8	Unmodified	_PQYRQKIL_					0	0	0		nc|ENSG00000162949|Q6MZZ7-2|CAPN13;ENSG00000162949|ENST00000295055|CAPN13	nc|ENSG00000162949|Q6MZZ7-2|CAPN13	nc|ENSG00000162949|Q6MZZ7-2|CAPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2764892578125	2	523.311284	1044.60801	-0.72817	-0.00038106	1.5064	0.00078834	0.77827	0.00040728	523.3117424210611	45.79	0.72218	45.79	45.514	46.236	0					28	20	2	0	0	0	0.027866	1	4538	4538		26.796	0	1	384240			59728	7017	41922	41985	65114	65114					0.0874944195113585
PQYSSLGSQP	10	Unmodified	_PQYSSLGSQP_					0	0	0		ENSG00000154342|ENST00000284523|WNT3A;nc|ENSG00000154342|P56704-2|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2539672851562	2	532.256371	1062.49819	1.2692	0.00067555	-4.3845	-0.0023337	-3.1153	-0.0016581	532.2538976413651	17.136	0.35338	16.982	16.806	17.159	-0.15403					12	6	2	0	0	0	1.118	1	146	146		30.318	1.1477	1	54533			59729	6405	41923	41986	65115	65115					-0.030560281786847554
PQYSSLGSQP	10	Unmodified	_PQYSSLGSQP_					0	0	0		ENSG00000154342|ENST00000284523|WNT3A;nc|ENSG00000154342|P56704-2|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.256371	1062.49819	-0.64262	-0.00034204	-1.6043	-0.00085388	-2.2469	-0.0011959	532.2555096108306	17.065	0.30026	16.857	16.662	16.962	-0.20777	-0.062415	0.0024103	NaN	30.318	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11680			59730	6405	41923	41986							-0.030560281786847554
PRAAETGLI	9	Unmodified	_PRAAETGLI_					0	0	0			REV__ENST00000592982.2_1_19:33794203-33794776:+|nuORF	REV__ENST00000592982.2_1_19:33794203-33794776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2789306640625	2	464.266542	926.51853	0.12444	5.7771E-05	-4.4574	-0.0020694	-4.3329	-0.0020116	464.26244578629644	51.173	0.14481	51.173	51.067	51.212	0					6	3	2	0	0	0	0.024319	1	5397	5397		39.253	2.2244	1	26938	+		59731	35759	41924	41987	65116	65116					0.052331872717559236
PRAFLAAM	8	Unmodified	_PRAFLAAM_					0	0	0		ENST00000462117.5_1_19:48972629-48975663:+|nuORF	ENST00000462117.5_1_19:48972629-48975663:+|nuORF	ENST00000462117.5_1_19:48972629-48975663:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.2469482421875	2	438.741648	875.468743	0.10111	4.4361E-05	2.9643	0.0013006	3.0654	0.0013449	438.7428493735086	26.266	0.45555	26.347	26.131	26.586	0.081291					25	10	3	0	0	0	0.027866	1	1301	1301		29.842	8.1392	1	142710			59732	14698	41925	41988	65117	65117					0.026027810621030767
PRAGGHRVPK	10	Unmodified	_PRAGGHRVPK_					0	0	0			REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|68|3|anti-sense	REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|68|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7537841796875	2	537.817599	1073.62064	-0.90533	-0.0004869	-0.77784	-0.00041834	-1.6832	-0.00090524	537.8170922935045	25.774	0.33401	25.547	25.352	25.686	-0.22683					17	7	3	0	0	0	0.03519	1	1259	1259		51.335	14.176	1	142070	+		59733	37604	41926	41989	65118	65118					0.0867789813401032
PRAIFVDLR	9	Unmodified	_PRAIFVDLR_					0	0	0		ENST00000558489.1_1_14:54422455-54423330:-|nuORF	ENST00000558489.1_1_14:54422455-54423330:-|nuORF	ENST00000558489.1_1_14:54422455-54423330:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8016967773438	2	543.824558	1085.63456	-1.0401	-0.00056562	0.11159	6.0686E-05	-0.92849	-0.00050494	543.8258155902918	56.606	0.13583	56.704	56.616	56.752	0.097893					5	3	2	0	0	0	0.024447	1	6240	6240		49.442	32.968	1	50751			59734	16750	41927	41990	65119	65119					0.09517130842459665
PRAIKPAIT	9	Unmodified	_PRAIKPAIT_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2868347167969	2	483.808377	965.6022	0.29336	0.00014193	-0.57591	-0.00027863	-0.28254	-0.0001367	483.80808518578027	20.415	0.38948	20.191	19.926	20.315	-0.22344					11	7	2	0	0	0	0.024457	1	529	529		21.96	0	1	16400	+		59735	27576	41928	41991	65120	65120					0.11802343439444485
PRAIKPAIT	9	Unmodified	_PRAIKPAIT_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.808377	965.6022	0.92857	0.00044925	-0.88964	-0.00043042	0.038933	1.8836E-05	483.8078440480734	20.309	0.2895	20.113	19.947	20.236	-0.19577	-0.039306	-7.4309E-05	NaN	21.96	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23953	+		59736	27576	41928	41991							0.11802343439444485
PRAKRGGVI	9	Unmodified	_PRAKRGGVI_					0	0	0			REV__ENSG00000172232|ENST00000233997|AZU1	REV__ENSG00000172232|ENST00000233997|AZU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.30419921875	2	477.303793	952.593033	2.6841	0.0012811	-2.9481	-0.0014071	-0.26392	-0.00012597	477.30228111537434	18.735	0.68918	18.735	18.529	19.218	0					39	13	5	0	0	0	0.36105	1	320	320		68.485	8.1907	1	596210	+		59737	26648	41929	41992	65121	65121					0.11483994873810843
PRAKRGGVI	9	Unmodified	_PRAKRGGVI_					0	0	0			REV__ENSG00000172232|ENST00000233997|AZU1	REV__ENSG00000172232|ENST00000233997|AZU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.3046875	2	477.303793	952.593033	3.4993	0.0016702	-3.7024	-0.0017672	-0.2031	-9.6942E-05	477.3019301345937	18.904	0.73783	18.967	18.698	19.436	0.063307					40	14	4	0	0	0	0.78069	1	301	301		40.573	4.9543	1	613180	+		59738	26648	41929	41992	65122	65122					0.11483994873810843
PRALHGCLFLL	11	Carbamidomethyl (C)	_PRALHGC(Carbamidomethyl (C))LFLL_	PRALHGC(1)LFLL		PRALHGC(52)LFLL		0	1	0		ENST00000555222.5_1_12:57492796-57493045:-|nuORF	ENST00000555222.5_1_12:57492796-57493045:-|nuORF	ENST00000555222.5_1_12:57492796-57493045:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.9154052734375	3	432.913025	1295.71725	0.22014	9.5302E-05	4.4398	0.0019221	4.66	0.0020174	432.9152180112777	32.377	1.8554	32.44	31.961	33.817	0.062889					134	48	6	0	0	0	0.90172	1	2214	2214		51.528	11.655	1	4754900			59739	16677	41930	41993	65123	65123	222				0.08121704578957178
PRALPRKV	8	Unmodified	_PRALPRKV_					0	0	0			REV__ENST00000262577.5_1_8:144519846-144520068:-|nuORF	REV__ENST00000262577.5_1_8:144519846-144520068:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	468.8067626953125	2	468.808711	935.602869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.511	1	62.272	61.772	62.772	-0.23926								0	0	0	1.0273	1	7248	7248		18.324	3.6603	1		+		59740	29665	41931	41994	65124	65124					0.13249182879167165
PRALSGRSE	9	Unmodified	_PRALSGRSE_					0	0	0		ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000461377.5_1_7:45039147-45115653:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7647705078125	2	486.764697	971.514842	0.11337	5.5182E-05	-0.16333	-7.9501E-05	-0.04996	-2.4319E-05	486.76454129353914	19.666	1.1013	19.666	19.414	20.516	0					58	22	4	0	0	0	0.5973	1	450	450		52.937	5.0211	1	1663900			59741	14682	41932	41995	65125	65125					0.027945174978981413
PRALSRAPS	9	Unmodified	_PRALSRAPS_					0	0	0			REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.77703857421875	2	477.777608	953.540663	0.26524	0.00012673	-1.1472	-0.00054811	-0.88196	-0.00042138	477.77724843167783	27.381	2.813	27.381	26.447	29.26	0					206	70	5	0	0	0	0.59099	1	1562	1562		53.351	2.016	1	85113000	+		59742	22028	41933	41996	65126	65126					0.0620341174017085
PRALSRAPS	9	Unmodified	_PRALSRAPS_					0	0	0			REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7768859863281	2	477.777608	953.540663	-0.080074	-3.8258E-05	-0.84906	-0.00040566	-0.92914	-0.00044392	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.72875	1	1553	1553		44.117	1.6423	1	79837000	+		59743	22028	41933	41996	65127	65127					0.0620341174017085
PRALSRAPS	9	Unmodified	_PRALSRAPS_					0	0	0			REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.77691650390625	2	477.777608	953.540663	-0.86432	-0.00041295	-0.014007	-6.692E-06	-0.87832	-0.00041964	477.77780002341314	27.145	2.5781	27.226	26.29	28.868	0.081293					199	64	5	0	0	0	0.59099	1	1478	1478		53.351	0	1	98548000	+		59744	22028	41933	41996	65128	65128					0.0620341174017085
PRALVVGADLL	11	Unmodified	_PRALVVGADLL_					0	0	0		ENSG00000113396|ENST00000262462|SLC27A6;SLC27A6|p.A335Qfs*15|1|0.44|ENSG00000113396|chr5:129015917-129015917|G/-|frameshift_variant;SLC27A6|p.G419Rfs*24|1|0.43|ENSG00000113396|chr5:129023703-129023704|-/A|frameshift_variant	ENSG00000113396|ENST00000262462|SLC27A6	ENSG00000113396|ENST00000262462|SLC27A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3443603515625	2	562.345323	1122.67609	-0.29633	-0.00016664	-3.2662	-0.0018367	-3.5625	-0.0020034	562.3433631418777	89.188	3.1299	89.06	88.322	91.452	-0.12774					179	74	4	0	0	0	1.0521	1	10843	10843		24.519	0	1	795170			59745	3292	41934	41997	65129	65129					0.11966266811123205
PRAPAKQLHT	10	Unmodified	_PRAPAKQLHT_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8248291015625	2	559.825089	1117.63563	-1.1642	-0.00065177	0.51793	0.00028995	-0.6463	-0.00036182	559.8253325931292	30.756	1.4087	30.756	29.977	31.386	0					92	33	4	0	0	0	0.37169	1	1999	1999		101.6	5.7855	1	2930400	+		59746	23283	41935	41998	65130	65130					0.08151345211354055
PRAPAKQLHT	10	Unmodified	_PRAPAKQLHT_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.824951171875	2	559.825089	1117.63563	-0.70247	-0.00039326	0.21449	0.00012008	-0.48797	-0.00027318	559.8251526876752	30.706	1.3364	30.715	30.042	31.378	0.0086689					92	31	5	0	0	0	0.26127	3	1988	1965;1976;1988		113.41	1.0007	1	3013600	+		59747	23283	41935	41998	65131;65132;65133	65133					0.08151345211354055
PRAPAKQLHT	10	Unmodified	_PRAPAKQLHT_					0	0	0			REV__ENSG00000132464|ENST00000396073|ENAM	REV__ENSG00000132464|ENST00000396073|ENAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8251342773438	2	559.825089	1117.63563	-0.76011	-0.00042553	0.071906	4.0255E-05	-0.68821	-0.00038527	559.8250988084533	30.491	1.1251	30.566	29.962	31.087	0.074314					82	26	5	0	0	0	0.37169	1	1906	1906		101.6	0.34809	1	3310800	+		59748	23283	41935	41998	65134	65134					0.08151345211354055
PRAPCASAV	9	Carbamidomethyl (C)	_PRAPC(Carbamidomethyl (C))ASAV_	PRAPC(1)ASAV		PRAPC(59)ASAV		0	1	0			REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	REV__ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7641296386719	2	464.737094	927.459635	-0.60681	-0.00028201	0.81381	0.00037821	0.207	9.62E-05	464.73738971290413	33.643	0.10772	33.643	33.554	33.662	0					4	2	2	0	0	0	0.023417	1	2441	2441		58.782	25.97	1	95263	+		59749	20579	41936	41999	65135	65135	264				-0.006996122942268812
PRAPGLISL	9	Unmodified	_PRAPGLISL_					0	0	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.28778076171875	2	462.287277	922.560001	1.0941	0.00050578	-0.64818	-0.00029964	0.44591	0.00020614	462.28699399765384	59.462	0.77258	59.462	59.108	59.88	0					57	20	4	0	0	0	0.39228	1	6787	6787		66.429	2.222	1	6074900	+		59750	32736	41937	42000	65136	65136					0.09562368031083679
PRAPGLISL	9	Unmodified	_PRAPGLISL_					0	0	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.28778076171875	2	462.287277	922.560001	0.7174	0.00033165	-0.24353	-0.00011258	0.47387	0.00021907	462.28718933821114	59.597	1.0144	59.397	58.816	59.83	-0.20016					62	27	4	0	0	0	0.27161	1	6784	6784		79.451	8.1553	1	4814200	+		59751	32736	41937	42000	65137	65137					0.09562368031083679
PRAPGLISL	9	Unmodified	_PRAPGLISL_					0	0	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.28741455078125	2	462.287277	922.560001	0.75314	0.00034817	-0.25079	-0.00011594	0.50234	0.00023223	462.28721463804175	59.285	0.69884	59.37	59.099	59.798	0.085686					54	18	4	0	0	0	0.35646	2	6677	6677;6712		68.787	2.9837	1	5592900	+		59752	32736	41937	42000	65138;65139	65138					0.09562368031083679
PRAPGPYVP	9	Unmodified	_PRAPGPYVP_					0	0	0			REV__ENSG00000113722|ENST00000231656|CDX1	REV__ENSG00000113722|ENST00000231656|CDX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77703857421875	2	477.263802	952.513051	0.029899	1.427E-05	-4.2331	-0.0020203	-4.2032	-0.0020061	477.2616098345026	28.09	0.42832	28.09	27.804	28.232	0					22	10	3	0	0	0	0.024293	1	1562	1562		52.299	23.15	1	525580	+		59753	22086	41938	42001	65140	65140					0.0348950847994729
PRAPGPYVP	9	Unmodified	_PRAPGPYVP_					0	0	0			REV__ENSG00000113722|ENST00000231656|CDX1	REV__ENSG00000113722|ENST00000231656|CDX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.77691650390625	2	477.263802	952.513051	-0.37615	-0.00017952	-4.1811	-0.0019955	-4.5573	-0.002175	477.2616640914159	27.841	0.38963	27.922	27.646	28.036	0.081291					14	9	2	0	0	0	0.024293	1	1478	1478		52.299	23.15	1	596690	+		59754	22086	41938	42001	65141	65141					0.0348950847994729
PRAPMRAPT	9	Unmodified	_PRAPMRAPT_					0	0	0			REV__ENST00000460511.5_1_2:128281301-128284055:-|nuORF	REV__ENST00000460511.5_1_2:128281301-128284055:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7742919921875	2	498.774011	995.533469	-0.070506	-3.5167E-05	-0.25218	-0.00012578	-0.32268	-0.00016095	498.7737155268212	27.014	1.0739	27.014	26.615	27.689	0					64	27	4	0	0	0	0.62163	1	1419	1419		51.335	3.6781	1	2867900	+		59755	32851	41939	42002	65142	65142					0.035523558680893075
PRAPMRAPT	9	Unmodified	_PRAPMRAPT_					0	0	0			REV__ENST00000460511.5_1_2:128281301-128284055:-|nuORF	REV__ENST00000460511.5_1_2:128281301-128284055:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.77386474609375	2	498.774011	995.533469	-0.75929	-0.00037871	0.38952	0.00019428	-0.36977	-0.00018443	498.77404374797106	26.822	0.92033	26.903	26.543	27.463	0.081291					61	23	4	0	0	0	0.75397	1	1354	1354		42.396	3.3746	1	2853400	+		59756	32851	41939	42002	65143	65143					0.035523558680893075
PRAPPAASSA	10	Unmodified	_PRAPPAASSA_					0	0	0		ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.77227783203125	2	462.748516	923.482479	0.67384	0.00031182	0.38721	0.00017918	1.0611	0.000491	462.7482964392566	24.147	0.63563	24.225	23.958	24.594	0.078344					23	13	3	0	0	0	0.03519	1	1004	1004		54.776	7.119	1	61722			59757	17549	41940	42003	65144	65144					0.01767730094888975
PRAPPAASSA	10	Unmodified	_PRAPPAASSA_					0	0	0		ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	462.748516	923.482479	-0.48273	-0.00022338	0.83711	0.00038737	0.35438	0.00016399	462.748645296737	24.286	0.56907	24.286	23.994	24.563	0	0.044354	0.0011712	NaN	54.776	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66066			59758	17549	41940	42003							0.01767730094888975
PRAPPAASSA	10	Unmodified	_PRAPPAASSA_					0	0	0		ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.748516	923.482479	-0.12951	-5.993E-05	0.21686	0.00010035	0.087347	4.042E-05	462.748521883913	24.534	0.80951	24.319	24.089	24.898	-0.2151	0.077237	0.00059713	NaN	54.776	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	587490			59759	17549	41940	42003							0.01767730094888975
PRAPPAASSA	10	Unmodified	_PRAPPAASSA_					0	0	0		ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.748516	923.482479	-0.1619	-7.492E-05	0.41766	0.00019327	0.25575	0.00011835	462.7485206926611	24.335	0.67984	24.16	23.918	24.598	-0.17484	-0.081617	0.00078297	NaN	54.776	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517780			59760	17549	41940	42003							0.01767730094888975
PRAPPAASSA	10	Unmodified	_PRAPPAASSA_					0	0	0		ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	ENST00000603798.5_1_12:51640581-51664197:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.748516	923.482479	2.0443	0.00094601	-1.8641	-0.00086259	0.18026	8.3414E-05	462.74748837011373	24.399	0.6068	24.219	23.983	24.59	-0.18089	-0.023219	-0.0013288	NaN	54.776	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475290			59761	17549	41940	42003							0.01767730094888975
PRAPPALAAL	10	Unmodified	_PRAPPALAAL_					0	0	0		ENST00000397591.2_1_15:39873284-39873991:+|nuORF	ENST00000397591.2_1_15:39873284-39873991:+|nuORF	ENST00000397591.2_1_15:39873284-39873991:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.25909423828125	2	488.800552	975.58655	0.12287	6.0057E-05	-0.12575	-6.1469E-05	-0.0028878	-1.4116E-06	488.80027071730734	41.34	0.44963	41.217	41.051	41.5	-0.12317					21	12	2	0	0	0	0.03519	1	3713	3713		37.159	11.709	1	211070			59762	13598	41941	42004	65145	65145					0.0977805692241418
PRAPPSRL	8	Unmodified	_PRAPPSRL_					0	0	0		ENST00000374316.9_1_6:33588911-33589319:+|nuORF	ENST00000374316.9_1_6:33588911-33589319:+|nuORF	ENST00000374316.9_1_6:33588911-33589319:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.235107421875	2	447.269419	892.524284	-0.074936	-3.3517E-05	1.1265	0.00050384	1.0515	0.00047032	447.2697271581476	26.454	0.61962	26.454	26.163	26.783	0					23	14	2	0	0	0	0.027866	1	1379	1379		37.159	0	1	147410			59763	13111	41942	42005	65146	65146					0.07372330574082753
PRAPPSRL	8	Unmodified	_PRAPPSRL_					0	0	0		ENST00000374316.9_1_6:33588911-33589319:+|nuORF	ENST00000374316.9_1_6:33588911-33589319:+|nuORF	ENST00000374316.9_1_6:33588911-33589319:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.23516845703125	2	447.269419	892.524284	-0.21998	-9.8391E-05	0.64297	0.00028758	0.42299	0.00018919	447.2696432898712	26.281	0.7103	26.363	26.131	26.841	0.081293					29	16	2	0	0	0	0.027866	1	1265	1265		38.806	0	1	200160			59764	13111	41942	42005	65147	65147					0.07372330574082753
PRAPPSRPA	9	Unmodified	_PRAPPSRPA_					0	0	0		ENST00000582478.5_1_17:80008786-80009642:-|nuORF;ENSG00000169733|ENST00000310496|RFNG	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.7724304199219	2	474.772326	947.530098	0.050788	2.4113E-05	-0.26251	-0.00012463	-0.21173	-0.00010052	474.7722953484883	23.256	1.9625	23.195	21.807	23.77	-0.060862					103	43	4	0	0	0	0.5973	1	851	851		52.937	5.2794	1	2833900			59765	17180	41943	42006	65148	65148					0.05423429085749376
PRAPQGAALP	10	Unmodified	_PRAPQGAALP_					0	0	0		ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2979736328125	2	489.279983	976.545414	-0.44961	-0.00021998	3.7625	0.0018409	3.3129	0.0016209	489.28172897152945	27.13	0.1816	27.117	26.953	27.134	-0.012983					6	4	2	0	0	0	0.03519	1	1418	1418		53.351	0	1	77224			59766	12116	41944	42007	65149	65149					0.05620295882943083
PRAPWFPAP	9	Unmodified	_PRAPWFPAP_					0	0	0			REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8189697265625	2	519.779619	1037.54469	-0.62532	-0.00032503	-1.3996	-0.00072748	-2.0249	-0.0010525	519.7787156226276	38.877	0.43053	38.778	38.552	38.983	-0.098751					21	11	2	0	0	0	0.024541	1	3248	3248		20.482	0	1	444560	+		59767	31545	41945	42008	65150	65150					0.02741501233890631
PRAQQAGI	8	Unmodified	_PRAQQAGI_					0	0	0		ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.22802734375	2	420.737951	839.46135	-0.5546	-0.00023334	0.38945	0.00016386	-0.16515	-6.9484E-05	420.73831270382345	25.833	0.63971	25.833	25.403	26.043	0					22	14	2	0	0	0	0.027866	1	1263	1263		18.324	0	1	37170			59768	4967	41946	42009	65151	65151					0.03519764786040014
PRAQSAGTSN	10	Unmodified	_PRAQSAGTSN_					0	0	0			REV__nc|ENSG00000151577|P35462-3|DRD3	REV__nc|ENSG00000151577|P35462-3|DRD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.25018310546875	2	494.743962	987.473371	-0.17874	-8.8431E-05	3.4119	0.001688	3.2332	0.0015996	494.7454811601284	45.011	0.45712	45.055	44.79	45.247	0.043877					36	12	4	0	0	0	0.03519	1	4261	4261		62.107	19.633	1	2015600	+		59769	24781	41947	42010	65152	65152					-0.020866632614229275
PRARGGARAI	10	Unmodified	_PRARGGARAI_					0	0	0			REV__ENST00000321341.10_2_18:48405602-48434530:+|nuORF	REV__ENST00000321341.10_2_18:48405602-48434530:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8101806640625	2	512.809774	1023.60499	0.39494	0.00020253	-0.48766	-0.00025008	-0.092724	-4.755E-05	512.8093863436535	17.528	0.41841	17.385	17.183	17.602	-0.14278					16	8	3	0	0	0	1.0393	1	175	175		40.778	6.6056	1	148590	+		59770	30344	41948	42011	65153	65153					0.09413611616980688
PRARLGPSA	9	Unmodified	_PRARLGPSA_					0	0	0			REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.77227783203125	2	462.772326	923.530098	0.747	0.00034569	-0.27176	-0.00012576	0.47524	0.00021993	462.7719002134706	24.292	0.81835	24.371	23.912	24.731	0.078346					51	17	4	0	0	0	0.75397	1	1004	1004		42.396	5.237	1	440950	+		59771	30916	41949	42012	65154	65154					0.0652742908575874
PRARLPCLV	9	Unmodified	_PRARLPCLV_					0	0	0		ENST00000313899.11_1_4:83294930-83295059:-|nuORF	ENST00000313899.11_1_4:83294930-83295059:-|nuORF	ENST00000313899.11_1_4:83294930-83295059:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.8095092773438	2	512.807854	1023.60115	3.2471	0.0016651	0.48965	0.0002511	3.7367	0.0019162	512.8079735690765	17.39	0.34738	17.39	17.25	17.598	0					16	6	3	0	0	0	0.97516	1	157	157		25.45	0	1	356120			59772	12109	41950	42013	65155	65155					0.0902980579890027
PRARLVPRAMA	11	Unmodified	_PRARLVPRAMA_					0	0	0			REV__ENST00000467594.1_1_3:52523610-52523790:+|nuORF	REV__ENST00000467594.1_1_3:52523610-52523790:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.372314453125	2	619.369141	1236.72373	0.41006	0.00025398	2.2755	0.0014094	2.6856	0.0016634	619.3705610213385	100.17	0.77786	100.03	99.755	100.53	-0.13364					55	22	3	0	0	0	1.0651	1	12446	12446		20.947	0.95016	1	1373000	+		59773	33080	41951	42014	65156	65156					0.11483642530356519
PRARNLVK	8	Unmodified	_PRARNLVK_					0	0	0			REV__ENSG00000163466|ENST00000315717|ARPC2	REV__ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.30352783203125	2	477.303793	952.593033	2.6841	0.0012811	-2.9481	-0.0014071	-0.26392	-0.00012597	477.30228111537434	18.735	0.68918	18.735	18.529	19.218	0					39	13	5	0	0	0	0.97924	1	344	344		40.573	7.057	1	596210	+		59774	25568	41952	42015	65157	65157					0.11483994873788106
PRARRQGVS	9	Unmodified	_PRARRQGVS_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.8099365234375	2	513.799406	1025.58426	3.2423	0.0016659	0.73937	0.00037989	3.9816	0.0020458	513.799666881834	17.492	0.2484	17.492	17.349	17.598	0					7	4	2	0	0	0	0.024506	1	167	167		23.042	7.4007	1	21344			59775	5122	41953	42016	65158	65158					0.0724902123731681
PRARRQGVS	9	Unmodified	_PRARRQGVS_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.799406	1025.58426	4.7301	0.0024303	-0.024703	-1.2692E-05	4.7054	0.0024176	513.799120415914	17.695	0.17089	17.755	17.654	17.825	0.06036	0.13183	-0.00059163	NaN	23.042	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8952.4			59776	5122	41953	42016							0.0724902123731681
PRARRTVT	8	Unmodified	_PRARRTVT_					0	0	0		ENSG00000234965|ENST00000621082|SHISA8;nc|ENSG00000234965|B8ZZ34-3|SHISA8	ENSG00000234965|ENST00000621082|SHISA8	ENSG00000234965|ENST00000621082|SHISA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7520751953125	2	478.79105	955.567546	-0.43515	-0.00020834	2.1192	0.0010146	1.684	0.00080629	478.7918622073785	33.142	0.90893	33.149	32.625	33.534	0.0066261					60	24	4	0	0	0	0.027866	1	2361	2361		53.351	0	1	690700			59777	10728	41954	42017	65159	65159					0.08798520351376737
PRASPGAFLG	10	Unmodified	_PRASPGAFLG_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7768249511719	2	486.766709	971.518865	-0.64205	-0.00031253	-3.6615	-0.0017823	-4.3036	-0.0020948	486.7648341717979	30.158	0.49202	30.167	29.922	30.414	0.0086689					23	11	3	0	0	0	0.03519	1	1886	1886		45.972	25.49	1	202920			59778	9763	41955	42018	65160	65160					0.031966069916279594
PRASPSPSP	9	Unmodified	_PRASPSPSP_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.235107421875	2	448.235242	894.45593	-0.014015	-6.2818E-06	-0.29544	-0.00013243	-0.30946	-0.00013871	448.23511053503233	26.649	2.2999	26.649	25.135	27.435	0					163	56	4	0	0	0	0.057894	1	1379	1379		125.81	3.638	1	7601100	+		59779	22840	41956	42019	65161	65161					0.004480412035718473
PRASPVASA	9	Unmodified	_PRASPVASA_					0	0	0			REV__nc|ENSG00000116141|Q9P0L2-2|MARK1	REV__nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2538757324219	2	428.237784	854.461016	-0.5844	-0.00025026	1.8618	0.00079731	1.2775	0.00054705	428.2381431267266	23.553	0.45845	23.553	23.321	23.78	0					21	10	3	0	0	0	0.024412	1	929	929		17.365	0	1	110270	+		59780	22260	41957	42020	65162	65162					0.027963450661786737
PRASYGRD	8	Unmodified	_PRASYGRD_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.77435302734375	2	461.230491	920.446428	-0.38831	-0.0001791	-1.2542	-0.00057848	-1.6425	-0.00075758	461.2305175600358	24.343	0.48334	24.343	24.08	24.563	0					19	10	3	0	0	0	0.027866	1	1015	1015		37.159	0	1	69051			59781	3986	41958	42021	65163	65163					-0.01697727081955236
PRATAPPPTPT	11	Unmodified	_PRATAPPPTPT_					0	0	0		ENST00000381103.6_1_5:61602143-61604167:+|nuORF;ENST00000509663.2_1_5:61602143-61811270:+|nuORF	ENST00000381103.6_1_5:61602143-61604167:+|nuORF	ENST00000381103.6_1_5:61602143-61604167:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.830322265625	2	553.303655	1104.59276	0.32871	0.00018188	-1.0326	-0.00057134	-0.70389	-0.00038947	553.3015155585399	88.682	0.38544	88.698	88.537	88.923	0.015907					14	8	2	0	0	0	0.024787	1	11089	11089		33.922	0	1	63747			59782	13330	41959	42022	65164	65164					0.04464530363270569
PRATPPAPA	9	Unmodified	_PRATPPAPA_					0	0	0			REV__ENST00000264661.3_1_17:40332898-40333183:-|nuORF	REV__ENST00000264661.3_1_17:40332898-40333183:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2480163574219	2	439.248152	876.481751	0.71219	0.00031283	-0.91331	-0.00040117	-0.20113	-8.8344E-05	439.24770877008893	33.204	2.5273	33.26	31.997	34.524	0.056568					165	65	4	0	0	0	0.72875	1	2365	2365		44.117	0	1	10061000	+		59783	29727	41960	42023	65165	65165					0.03856935445844556
PRAVFVLLE	9	Unmodified	_PRAVFVLLE_					0	0	0		nc|ENSG00000068323|P19532-2|TFE3;ENSG00000068323|ENST00000315869|TFE3	nc|ENSG00000068323|P19532-2|TFE3	nc|ENSG00000068323|P19532-2|TFE3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.3109741210938	2	522.316035	1042.61752	-0.99892	-0.00052175	-1.1223	-0.00058619	-2.1212	-0.0011079	522.3151534029475	32.273	0.34863	32.273	32.07	32.418	0					24	8	4	0	0	0	0.31247	1	2233	2233		73.975	2.679	1	569800			59784	1379	41961	42024	65166	65166					0.09791210236676307
PRAVLVRLS	9	Unmodified	_PRAVLVRLS_					0	0	0		ENST00000476532.1_1_X:128913960-128914035:+|nuORF	ENST00000476532.1_1_X:128913960-128914035:+|nuORF	ENST00000476532.1_1_X:128913960-128914035:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.8241882324219	2	505.827101	1009.63965	-0.44734	-0.00022627	1.8653	0.0009435	1.4179	0.00071722	505.8277696873065	43.22	0.76266	43.081	42.846	43.609	-0.13929					40	20	3	0	0	0	0.62163	1	4007	4007		51.335	0	1	1480800			59785	15087	41962	42025	65167	65167					0.13521434705091906
PRAVREVGDV	10	Unmodified	_PRAVREVGDV_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3170166015625	2	549.306729	1096.59891	-1.2298	-0.00067552	4.0434	0.0022211	2.8136	0.0015455	549.308818523541	43.588	0.43387	43.444	43.241	43.675	-0.14471					20	11	2	0	0	0	0.03519	1	4055	4055		64.207	0	1	215330			59786	7534	41963	42026	65168	65168					0.05447048594805892
PRAYPSEPF	9	Unmodified	_PRAYPSEPF_					0	0	0			REV__ENST00000352251.7_2_13:39611887-39612184:-|nuORF	REV__ENST00000352251.7_2_13:39611887-39612184:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.842529296875	2	532.263999	1062.51345	-0.9412	-0.00050097	-1.1154	-0.0005937	-2.0566	-0.0010947	532.2630945401811	51.536	0.62666	51.389	51.084	51.711	-0.14735					26	17	2	0	0	0	0.024292	1	5421	5421		40.778	1.5253	1	396410	+		59787	30737	41964	42027	65169	65169					-0.015311165908542534
PRCHCRHHTT	10	Unmodified	_PRCHCRHHTT_					0	0	0		nc|ENSG00000142233|Q8WTR8-2|NTN5;ENST00000600468.1_1_19:49166991-49176216:-|nuORF;ENSG00000142233|ENST00000270235|NTN5	nc|ENSG00000142233|Q8WTR8-2|NTN5	nc|ENSG00000142233|Q8WTR8-2|NTN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2317199707031	3	416.525947	1246.55601	0.21632	9.0103E-05	1.4599	0.00060808	1.6762	0.00069819	416.52647791849193	21.567	0.57436	21.39	21.113	21.688	-0.17721					19	11	2	0	0	0	0.03519	1	660	660		20.03	0	1	84798			59788	5549	41965	42028	65170	65170					-0.05740368005945129
PRCLVFRGL	9	Unmodified	_PRCLVFRGL_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8091430664062	2	530.807854	1059.60115	0.27337	0.00014511	1.9871	0.0010548	2.2605	0.0011999	530.808694806215	103.87	0.53911	103.7	103.44	103.98	-0.16791					27	12	3	0	0	0	0.59099	1	12923	12923		53.351	15.54	1	353020	+		59789	25714	41966	42029	65171	65171					0.0737380579892033
PRCSRLPL	8	Unmodified	_PRCSRLPL_					0	0	0		ENST00000319836.7_1_10:46089857-46090160:-|nuORF	ENST00000319836.7_1_10:46089857-46090160:-|nuORF	ENST00000319836.7_1_10:46089857-46090160:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.7770690917969	2	471.271104	940.527655	0.071972	3.3918E-05	-4.305	-0.0020288	-4.233	-0.0019949	471.26892135051236	61.779	0.67924	61.565	61.293	61.972	-0.21375					27	16	2	0	0	0	0.027866	1	6932	6932		35.618	15.136	1	541340			59790	12188	41967	42030	65172	65172					0.055012573564454215
PRCSSISFT	9	Carbamidomethyl (C)	_PRC(Carbamidomethyl (C))SSISFT_	PRC(1)SSISFT		PRC(82)SSISFT		0	1	0		ENST00000282541.9_1_3:32208294-32208585:+|nuORF	ENST00000282541.9_1_3:32208294-32208585:+|nuORF	ENST00000282541.9_1_3:32208294-32208585:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.7903442382812	2	527.752941	1053.49133	-0.49578	-0.00026165	0.094663	4.9959E-05	-0.40111	-0.00021169	527.7528772641921	41.423	0.93385	41.196	40.616	41.55	-0.2278					29	23	2	0	0	0	0.023454	1	3636	3636		82.241	25.519	1	98615			59791	11729	41968	42031	65173	65173	160				-0.03327664330936386
PRDFYVVSL	9	Unmodified	_PRDFYVVSL_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|154|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|154|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|154|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.2952880859375	2	548.295299	1094.57605	-0.80449	-0.0004411	0.68258	0.00037425	-0.12191	-6.6841E-05	548.2957619915276	19.826	2.2552	19.707	19.446	21.701	-0.11872					130	46	5	0	0	0	0.77768	1	458	458		40.778	1.972	1	5925800			59792	17864	41969	42032	65174	65174					0.03254029477329823
PRDIGTLA	8	Unmodified	_PRDIGTLA_					0	0	0			REV__ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	REV__ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.7690124511719	2	421.74016	841.465767	0.79686	0.00033607	-0.22976	-9.6898E-05	0.5671	0.00023917	421.73989544268005	58.817	0.33081	58.63	58.462	58.793	-0.18705					16	8	2	0	0	0	0.027866	1	6661	6661		17.365	0	1	307230	+		59793	37807	41970	42033	65175	65175					0.03869229208942215
PRDLTDAEI	9	Unmodified	_PRDLTDAEI_					0	0	0		LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2881469726562	2	515.264196	1028.51384	-0.11683	-6.0197E-05	3.3631	0.0017329	3.2463	0.0016727	515.265872634099	40.312	0.1458	40.087	40.004	40.15	-0.225					5	3	2	0	0	0	0.024261	1	3459	3459		54.776	10.399	1	58249			59794	17923	41971	42034	65176	65176					0.0007225833833217621
PRDPKSTP	8	Unmodified	_PRDPKSTP_					0	0	0		ENST00000533675.5_1_11:117265793-117282881:+|nuORF;ENST00000533223.1_1_11:117257895-117280842:+|nuORF;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164;ENST00000528706.5_1_11:117279912-117282881:+|nuORF	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	ENST00000533675.5_1_11:117265793-117282881:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.793212890625	2	449.243067	896.47158	-0.50311	-0.00022602	2.8167	0.0012654	2.3136	0.0010394	449.24395956125204	30.555	0.91573	30.63	30.378	31.294	0.074316					29	21	2	0	0	0	0.027866	1	1934	1934		37.159	5.6293	1	199930			59795	3032	41972	42035	65177	65177					0.019203277206202074
PRDPLGFKVSD	11	Unmodified	_PRDPLGFKVSD_					0	0	0		ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	615.8294067382812	2	615.827495	1229.64044	-0.26249	-0.00016165	3.461	0.0021314	3.1985	0.0019697	615.8294527197208	98.711	1.4697	98.707	98.307	99.777	-0.0038834					85	33	3	0	0	0	0.76305	1	12523	12523		59.931	11.329	1	889840			59796	1944	41973	42036	65178	65178					0.03480184563477451
PRDPLGFKVSD	11	Unmodified	_PRDPLGFKVSD_					0	0	0		ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	615.827495	1229.64044	-0.048931	-3.0133E-05	-3.1468	-0.0019379	-3.1957	-0.001968	616.3288998519516	98.794	0.65793	98.658	98.277	98.935	-0.13625	0.060371	-0.0079239	NaN	59.931	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76189			59797	1944	41973	42036							0.03480184563477451
PRDPLGFKVSD	11	Unmodified	_PRDPLGFKVSD_					0	0	0		ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	615.827495	1229.64044	0.60482	0.00037246	2.8599	0.0017612	3.4648	0.0021337	616.3310214856323	98.54	0.43665	98.416	98.154	98.591	-0.12413	-0.18144	-0.0005257	NaN	59.931	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54934			59798	1944	41973	42036							0.03480184563477451
PRDPLGFKVSD	11	Unmodified	_PRDPLGFKVSD_					0	0	0		ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	615.827495	1229.64044	-0.19101	-0.00011763	3.3777	0.0020801	3.1867	0.0019625	615.829395979556	98.741	1.2986	98.573	98.154	99.453	-0.16863	-0.024821	0.00011201	NaN	59.931	35	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89302			59799	1944	41973	42036							0.03480184563477451
PRDPSFLHQ	9	Unmodified	_PRDPSFLHQ_					0	0	0		ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-6|NFIB	ENSG00000147862|ENST00000380953|NFIB	ENSG00000147862|ENST00000380953|NFIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.7776489257812	2	548.780348	1095.54614	-1.3488	-0.00074019	-2.6808	-0.0014711	-4.0296	-0.0022113	548.7787642060237	34.486	0.76658	34.537	34.253	35.02	0.050255					52	19	4	0	0	0	0.42604	1	2528	2528		64.207	4.2765	1	1486200			59800	5997	41974	42037	65179	65179					0.002190905319821468
PRDPSFLHQ	9	Unmodified	_PRDPSFLHQ_					0	0	0		ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-6|NFIB	ENSG00000147862|ENST00000380953|NFIB	ENSG00000147862|ENST00000380953|NFIB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.780348	1095.54614	-0.81956	-0.00044976	-3.3907	-0.0018608	-4.2103	-0.0023105	548.7783836173145	34.635	0.79319	34.635	34.371	35.164	0	0.086602	-0.00037759	NaN	64.207	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1091000			59801	5997	41974	42037							0.002190905319821468
PRDPSFLHQ	9	Unmodified	_PRDPSFLHQ_					0	0	0		ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-6|NFIB	ENSG00000147862|ENST00000380953|NFIB	ENSG00000147862|ENST00000380953|NFIB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.780348	1095.54614	-0.76309	-0.00041877	-3.447	-0.0018916	-4.2101	-0.0023104	548.7783670111197	34.479	0.69484	34.474	34.112	34.807	-0.0045624	-0.074557	-0.00043936	NaN	64.207	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	947210			59802	5997	41974	42037							0.002190905319821468
PRDSGLYAC	9	Unmodified	_PRDSGLYAC_					0	0	0		nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;ENST00000491475.1_1_10:123324010-123325402:-|nuORF;nc|ENSG00000066468|P21802-14|FGFR2;nc|ENSG00000066468|P21802-19|FGFR2	nc|ENSG00000066468|P21802-17|FGFR2	nc|ENSG00000066468|P21802-17|FGFR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.80328369140625	2	491.226559	980.438566	-0.64766	-0.00031815	0.75974	0.0003732	0.11207	5.5052E-05	491.2269023512878	35.877	1.4029	35.921	34.941	36.344	0.04406					58	37	2	0	0	0	0.024323	1	2686	2686		53.351	5.4358	1	146350			59803	18065	41975	42038	65180	65180					-0.052436223937547766
PRDSNFAI	8	Unmodified	_PRDSNFAI_					0	0	0			REV__nc|ENSG00000262246|P57737-2|CORO7	REV__nc|ENSG00000262246|P57737-2|CORO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2618408203125	2	460.235242	918.45593	-0.39431	-0.00018148	3.7447	0.0017234	3.3504	0.001542	460.23690554690864	28.474	1.2211	28.47	27.654	28.875	-0.0042019					42	29	2	0	0	0	0.027866	1	1611	1611		53.351	10.955	1	246920	+		59804	29121	41976	42039	65181	65181					-0.006559587964375169
PREELRTF	8	Unmodified	_PREELRTF_					0	0	0		ENST00000487162.1_1_22:50967153-50967951:-|nuORF	ENST00000487162.1_1_22:50967153-50967951:-|nuORF	ENST00000487162.1_1_22:50967153-50967951:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2683715820312	2	524.282723	1046.55089	-0.84615	-0.00044362	-0.77546	-0.00040656	-1.6216	-0.00085018	524.2824340639694	45.748	0.5121	45.596	45.244	45.756	-0.15156					20	14	2	0	0	0	0.027866	1	4426	4426		60.294	0	1	419910			59805	15360	41977	42040	65182	65182					0.02947974674748366
PREKAAKSE	9	Unmodified	_PREKAAKSE_					0	0	0			REV__ENSG00000187003|ENST00000333999|ACTL7A	REV__ENSG00000187003|ENST00000333999|ACTL7A	MSMS	OPSCC_40_ClassI_Rep-3	6	508.2820129394531	2	508.28018	1014.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.904	1	23.723	23.223	24.223	-0.18089								0	0	0	0.26342	1	966	966		70.816	1.1886	1		+		59806	27904	41978	42041	65183	65183					0.03911670812135526
PREKSGIPM	9	Unmodified	_PREKSGIPM_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7922668457031	2	507.773677	1013.5328	-1.1979	-0.00060824	0.2162	0.00010978	-0.98166	-0.00049846	507.77362424284723	43.929	0.45625	43.929	43.695	44.151	0					18	12	2	0	0	0	0.024021	1	4156	4156		32.812	0	1	322580	+		59807	23950	41979	42042	65184	65184					0.026575164283940467
PRELAAFCD	9	Unmodified	_PRELAAFCD_					0	0	0		ENST00000569487.1_1_16:87743802-87743964:-|nuORF	ENST00000569487.1_1_16:87743802-87743964:-|nuORF	ENST00000569487.1_1_16:87743802-87743964:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.77947998046875	2	511.242209	1020.46987	-0.43386	-0.00022181	-0.032219	-1.6472E-05	-0.46608	-0.00023828	511.7432528661494	30.27	0.67136	30.026	29.612	30.284	-0.24415					29	15	3	0	0	0	0.024457	1	1861	1861		45.952	8.7928	1	88293			59808	17005	41980	42043	65185	65185					-0.03955049359660734
PRELRCEV	8	Unmodified	_PRELRCEV_					0	0	0			REV__ENST00000409587.5_1_19:40854631-40871796:+|nuORF	REV__ENST00000409587.5_1_19:40854631-40871796:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.824462890625	2	501.263476	1000.5124	0.0070574	3.5376E-06	-2.6408	-0.0013237	-2.6337	-0.0013202	501.26186267672443	33.725	0.55397	33.782	33.5	34.054	0.056572					22	13	2	0	0	0	0.027866	1	2377	2377		10.265	0	1	93961	+		59809	31964	41981	42044	65186	65186					0.012163457685801404
PRELTRDL	8	Unmodified	_PRELTRDL_					0	0	0		ENSG00000131748|ENST00000336308|STARD3;nc|ENSG00000131748|Q14849-2|STARD3;nc|ENSG00000131748|Q14849-3|STARD3;ENST00000484773.6_1_17:37809763-37814894:+|nuORF;ENST00000582874.1_1_17:37809793-37814734:+|nuORF;ENST00000488876.5_1_17:37809763-37814321:+|nuORF;ENST00000583582.5_1_17:37809763-37814496:+|nuORF	ENSG00000131748|ENST00000336308|STARD3	ENSG00000131748|ENST00000336308|STARD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.77227783203125	2	500.282723	998.550893	0.31717	0.00015867	-2.807	-0.0014043	-2.4898	-0.0012456	500.28211100133365	24.801	0.6251	24.879	24.547	25.173	0.078344					38	13	4	0	0	0	0.027866	1	1026	1026		24.203	1.1603	1	263080			59810	4547	41982	42045	65187	65187					0.05155974674732988
PREPVSDPSQD	11	Unmodified	_PREPVSDPSQD_					0	0	0			REV__nc|ENSG00000171798|Q76NI1-4|KNDC1;REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.73468017578125	3	409.526441	1225.55749	-0.1717	-7.0316E-05	2.7625	0.0011313	2.5908	0.001061	409.52776570964596	31.058	0.32942	30.817	30.585	30.915	-0.24109					11	7	2	0	0	0	0.024746	1	2042	2042		21.032	3.1991	1	23822	+		59811	26602;36935	41983	42046	65188	65188					-0.046261769551847465
PREQMCTWNR	10	Unmodified	_PREQMCTWNR_					0	0	0		ENST00000319119.4_1_9:129643050-129643116:+|nuORF	ENST00000319119.4_1_9:129643050-129643116:+|nuORF	ENST00000319119.4_1_9:129643050-129643116:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7853698730469	3	440.86938	1319.58631	3.3337	0.0014697	-0.61906	-0.00027293	2.7147	0.0011968	440.8689676623967	18.977	0.69023	19.04	18.845	19.535	0.063307					26	13	3	0	0	0	0.03519	1	302	302		25.126	2.5463	1	27484			59812	12179	41984	42047	65189	65189					-0.060700541313963186
PRFAKKQN	8	Unmodified	_PRFAKKQN_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7889099121094	2	494.787976	987.561398	-0.53009	-0.00026228	-0.79851	-0.00039509	-1.3286	-0.00065738	494.78830879190554	30.342	0.9868	30.351	29.637	30.624	0.0086689					53	23	4	0	0	0	1.0133	1	1943	1943		35.201	0	1	1135500			59813	18822	41985	42048	65190	65190					0.06712002119843419
PRFAKKQN	8	Unmodified	_PRFAKKQN_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MSMS	OPSCC_39_ClassI_Rep-3	3	494.78887939453125	2	494.787976	987.561398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.153	1	30.227	29.727	30.727	0.074314								0	0	0	0.81261	1	1862	1862		33.516	1.5607	1				59814	18822	41985	42048	65191	65191					0.06712002119843419
PRFAPVLIN	9	Unmodified	_PRFAPVLIN_					0	0	0		nc|ENSG00000164338|Q8TED0-2|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;ENSG00000164338|ENST00000296792|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7901611328125	2	513.808377	1025.6022	-0.087551	-4.4984E-05	-3.0019	-0.0015424	-3.0895	-0.0015874	513.8063370334754	41.259	0.41972	41.259	41.085	41.505	0					13	11	2	0	0	0	0.024457	1	3717	3717		29.15	14.285	1	146060			59815	7265	41986	42049	65192	65192					0.09042343439477918
PRFDVSLVY	9	Unmodified	_PRFDVSLVY_					0	0	0		ENST00000468775.1_1_2:11591697-11606038:-|nuORF;nc|ENSG00000169016|O75461-3|E2F6;ENSG00000169016|ENST00000381525|E2F6	ENST00000468775.1_1_2:11591697-11606038:-|nuORF	ENST00000468775.1_1_2:11591697-11606038:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.295166015625	2	548.295299	1094.57605	-0.80449	-0.0004411	0.68258	0.00037425	-0.12191	-6.6841E-05	548.2957619915276	19.826	2.2552	19.707	19.446	21.701	-0.11872					130	46	5	0	0	0	0.62163	1	508	508		51.335	0.14276	1	5925800			59816	7889	41987	42050	65193	65193					0.03254029477329823
PRFDVSLVY	9	Unmodified	_PRFDVSLVY_					0	0	0		ENST00000468775.1_1_2:11591697-11606038:-|nuORF;nc|ENSG00000169016|O75461-3|E2F6;ENSG00000169016|ENST00000381525|E2F6	ENST00000468775.1_1_2:11591697-11606038:-|nuORF	ENST00000468775.1_1_2:11591697-11606038:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2952270507812	2	548.295299	1094.57605	1.3792	0.00075621	-1.6033	-0.00087911	-0.22415	-0.0001229	548.2945708902448	19.755	1.8583	19.821	19.538	21.396	0.066195					101	37	5	0	0	0	0.85329	1	467	467		35.618	2.8059	1	5896600			59817	7889	41987	42050	65194	65194					0.03254029477329823
PRFFFIFH	8	Unmodified	_PRFFFIFH_					0	0	0			REV__ENST00000485835.1_1_17:38151035-38151804:+|nuORF	REV__ENST00000485835.1_1_17:38151035-38151804:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.7990112304688	2	555.797812	1109.58107	0.018911	1.051E-05	0.95216	0.00052921	0.97107	0.00053972	555.7980864873917	41.075	1.017	41.098	40.764	41.781	0.023003					64	28	3	0	0	0	0.98906	1	3602	3602		39.021	1.8624	1	2826900	+		59818	33572	41988	42051	65195	65195					0.03066378130620251
PRFHRRKMQV	10	Unmodified	_PRFHRRKMQV_					0	0	0		ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.77752685546875	3	452.259419	1353.75643	0.019232	8.6977E-06	4.1621	0.0018823	4.1813	0.001891	452.26132324450253	41.037	0.52702	41.06	40.797	41.324	0.023006					28	14	3	0	0	0	0.03519	1	3643	3643		14.694	0.60766	1	496010			59819	6818	41989	42052	65196	65196					0.09369849653171514
PRFKQLFKGT	10	Unmodified	_PRFKQLFKGT_					0	0	0		nc|ENSG00000176605|Q52M58|LINC02914	nc|ENSG00000176605|Q52M58|LINC02914	nc|ENSG00000176605|Q52M58|LINC02914	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3536376953125	2	611.358765	1220.70298	-1.2666	-0.00077434	-3.194	-0.0019527	-4.4606	-0.002727	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.0002	1	11757	11757		45.972	14.442	1	3820300			59820	18538	41990	42053	65197	65197					0.10145375422325742
PRFLKPIL	8	Unmodified	_PRFLKPIL_					0	0	0			REV__ENSG00000183605|ENST00000355697|SFXN4	REV__ENSG00000183605|ENST00000355697|SFXN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.266845703125	2	492.323663	982.632772	-0.5651	-0.00027821	-4.1913	-0.0020635	-4.7564	-0.0023417	492.321623369756	36.6	1.1203	36.638	35.997	37.117	0.038044					56	30	3	0	0	0	0.027866	1	2932	2932		83.287	30.988	1	321860	+		59821	27588	41991	42054	65198	65198					0.14076121824507482
PRFMLLES	8	Oxidation (M)	_PRFM(Oxidation (M))LLES_		PRFM(1)LLES		PRFM(45)LLES	0	0	1		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7649841308594	2	504.762778	1007.511	-0.55985	-0.00028259	3.7062	0.0018707	3.1463	0.0015882	504.7645902310088	20.88	0.71893	20.775	20.473	21.192	-0.10455					47	14	4	0	0	0	0.95417	1	605	605		44.531	7.372	1	868740			59822	5893	41992	42055	65199	65199		249			0.0075471167984915155
PRFPPATP	8	Unmodified	_PRFPPATP_					0	0	0			REV__ENST00000445369.2_1_16:3063604-3064486:+|nuORF	REV__ENST00000445369.2_1_16:3063604-3064486:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.78790283203125	2	441.745245	881.475937	-0.20366	-8.9966E-05	-1.2238	-0.0005406	-1.4274	-0.00063057	441.74560614216	43.02	0.29077	43.02	42.859	43.15	0					12	7	2	0	0	0	0.027866	1	3991	3991		23.042	0	1	65400	+		59823	32612	41993	42056	65200	65200					0.030458369341772595
PRFTWPQV	8	Unmodified	_PRFTWPQV_					0	0	0		ENST00000340573.8_1_11:57319465-57319669:-|nuORF	ENST00000340573.8_1_11:57319465-57319669:-|nuORF	ENST00000340573.8_1_11:57319465-57319669:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7901611328125	2	515.777077	1029.5396	0.028552	1.4727E-05	3.3511	0.0017284	3.3796	0.0017431	515.7788714516483	41.432	0.41317	41.309	41.051	41.464	-0.12317					20	11	2	0	0	0	0.027866	1	3717	3717		24.203	6.8378	1	101200			59824	12471	41994	42057	65201	65201					0.026011973712684267
PRGAAIFRLW	10	Unmodified	_PRGAAIFRLW_					0	0	0		ENST00000463727.1_1_10:129869915-129870137:+|nuORF	ENST00000463727.1_1_10:129869915-129870137:+|nuORF	ENST00000463727.1_1_10:129869915-129870137:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	593.8089599609375	2	593.845825	1185.6771	-0.37912	-0.00022514	-2.8859	-0.0017138	-3.2651	-0.0019389	593.8438826299345	21.515	0.3817	21.587	21.303	21.684	0.071487					12	7	2	0	0	0	0.03519	1	629	629		56.721	12.344	1	11896			59825	14740	41995	42058	65202	65202					0.09168525970699193
PRGAARGRL	9	Unmodified	_PRGAARGRL_					0	0	0		ENST00000312734.8_1_2:27333827-27341872:-|nuORF	ENST00000312734.8_1_2:27333827-27341872:-|nuORF	ENST00000312734.8_1_2:27333827-27341872:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2908935546875	2	477.291217	952.567881	3.843	0.0018342	-4.0156	-0.0019166	-0.17252	-8.234E-05	477.28930086289495	18.644	0.73427	18.708	18.307	19.041	0.063307					27	14	3	0	0	0	0.94809	1	283	283		29.15	0.89528	1	59353			59826	12092	41996	42059	65203	65203					0.08969940071233395
PRGARARTNV	10	Unmodified	_PRGARARTNV_					0	0	0			REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	REV__ENST00000445792.7_1_X:305849-322301:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3182983398438	2	549.317963	1096.62137	-0.16306	-8.9571E-05	0.015631	8.5866E-06	-0.14743	-8.0985E-05	549.3178505980146	99.7	0.66833	99.695	99.343	100.01	-0.0050812					40	15	4	0	0	0	1.0122	1	12673	12673		44.377	7.9304	1	375560	+		59827	32622	41997	42060	65204	65204					0.0769269278309821
PRGARSQAQCL	11	Unmodified	_PRGARSQAQCL_					0	0	0		nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	nc|ENSG00000183260|Q9H3Z7|ABHD16B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.808837890625	2	593.809113	1185.60367	-0.72804	-0.00043232	0.377	0.00022387	-0.35104	-0.00020845	593.8093228779526	22.771	3.0568	22.845	22.03	25.087	0.073954					178	67	3	0	0	0	0.98542	1	746	746		40.058	0	1	2073100			59828	18578	41998	42061	65205	65205					0.018296094659262963
PRGAVLLNSF	10	Unmodified	_PRGAVLLNSF_					0	0	0		nc|ENSG00000176753|Q8N910|PAK6-AS1	nc|ENSG00000176753|Q8N910|PAK6-AS1	nc|ENSG00000176753|Q8N910|PAK6-AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7578125	2	537.308741	1072.60293	-0.47333	-0.00025432	1.1699	0.00062861	0.69659	0.00037428	537.3093136792577	53.409	0.65581	53.281	52.951	53.607	-0.12705					24	17	2	0	0	0	0.03519	1	5594	5594		40.778	12.896	1	206800			59829	18542	41999	42062	65206	65206					0.06953138088510968
PRGAVLLNSF	10	Unmodified	_PRGAVLLNSF_					0	0	0		nc|ENSG00000176753|Q8N910|PAK6-AS1	nc|ENSG00000176753|Q8N910|PAK6-AS1	nc|ENSG00000176753|Q8N910|PAK6-AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7583618164062	2	537.308741	1072.60293	-0.42318	-0.00022738	0.391	0.00021009	-0.032179	-1.729E-05	537.308961468146	53.518	0.53618	53.259	53.075	53.611	-0.25838					23	14	2	0	0	0	0.03519	1	5616	5616		31.53	1.2121	1	148760			59830	18542	41999	42062	65207	65207					0.06953138088510968
PRGDTYQPAMM	11	Unmodified	_PRGDTYQPAMM_					0	0	0		nc|ENSG00000167302|Q96N21-2|TEPSIN;ENSG00000167302|ENST00000637944|TEPSIN	nc|ENSG00000167302|Q96N21-2|TEPSIN	nc|ENSG00000167302|Q96N21-2|TEPSIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.7850341796875	2	633.783915	1265.55328	-0.86168	-0.00054612	2.4021	0.0015224	1.5404	0.00097627	633.7853790143155	43.035	0.64922	42.809	42.484	43.133	-0.22597					49	16	4	0	0	0	1.0408	1	3910	3910		12.812	0	1	2381100			59831	7669	42000	42063	65208	65208					-0.06887680974114119
PRGEARPPSN	10	Unmodified	_PRGEARPPSN_					0	0	0			REV__ENST00000458594.5_1_22:30221719-30223538:-|nuORF	REV__ENST00000458594.5_1_22:30221719-30223538:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3262939453125	2	540.780879	1079.5472	-1.1148	-0.00060288	1.9582	0.001059	0.84336	0.00045607	540.781657424561	48.829	1.058	48.728	48.396	49.454	-0.1008					64	27	3	0	0	0	0.03519	1	4862	4862		53.089	12.516	1	1323400	+		59832	32824	42001	42064	65209	65209					0.010613049009180031
PRGEPSAQP	9	Unmodified	_PRGEPSAQP_					0	0	0			REV__ENSG00000134460|ENST00000379959|IL2RA	REV__ENSG00000134460|ENST00000379959|IL2RA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.7381896972656	2	469.738148	937.461744	-0.11426	-5.3671E-05	-0.10121	-4.7543E-05	-0.21547	-0.00010121	469.73795189445514	22.974	0.90932	22.974	22.572	23.482	0					61	20	4	0	0	0	0.6238	2	848	848;879		51.193	1.6567	1	748960	+		59833	23454	42002	42065	65210;65211	65210					-0.009488602847568472
PRGEPSAQP	9	Unmodified	_PRGEPSAQP_					0	0	0			REV__ENSG00000134460|ENST00000379959|IL2RA	REV__ENSG00000134460|ENST00000379959|IL2RA	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	469.738148	937.461744	-0.11426	-5.3671E-05	-0.10121	-4.7543E-05	-0.21547	-0.00010121	469.73795189445514	22.974	0.90932	22.974	22.572	23.482	0	0.02325	3.8792E-06	NaN	51.193	61	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748960	+		59834	23454	42002	42065							-0.009488602847568472
PRGEPSAQP	9	Unmodified	_PRGEPSAQP_					0	0	0			REV__ENSG00000134460|ENST00000379959|IL2RA	REV__ENSG00000134460|ENST00000379959|IL2RA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	469.738148	937.461744	-0.07659	-3.5977E-05	-0.11388	-5.3493E-05	-0.19047	-8.947E-05	469.73794379230816	22.988	0.77865	22.927	22.568	23.347	-0.06086	-0.02325	-8.0197E-06	NaN	51.193	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367480	+		59835	23454	42002	42065							-0.009488602847568472
PRGETMTSV	9	Unmodified	_PRGETMTSV_					0	0	0			REV__ENST00000326648.4_1_15:64973978-64974065:+|nuORF	REV__ENST00000326648.4_1_15:64973978-64974065:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2704772949219	2	489.239667	976.46478	-0.35139	-0.00017192	1.9872	0.00097221	1.6358	0.00080029	489.2405797897223	38.955	0.76083	38.955	38.597	39.357	0					45	20	3	0	0	0	0.024	1	3325	3325		29.15	0	1	563740	+		59836	30406	42003	42066	65212	65212					-0.02439353222257523
PRGGQLRT	8	Unmodified	_PRGGQLRT_					0	0	0		ENSG00000097096|ENST00000341460|SYDE2;nc|ENSG00000097096|Q5VT97-2|SYDE2;SYDE2|p.Y292Lfs*9|1|0.32|ENSG00000097096|chr1:85190623-85190624|-/A|frameshift_variant	ENSG00000097096|ENST00000341460|SYDE2	ENSG00000097096|ENST00000341460|SYDE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.7568359375	2	442.756675	883.498798	0.3247	0.00014376	0.098057	4.3415E-05	0.42275	0.00018718	442.7566004919502	21.108	0.78396	21.18	20.762	21.546	0.071487					33	15	4	0	0	0	0.96719	1	570	570		42.474	3.6683	1	377350			59837	2059	42004	42067	65213	65213					0.05238856051653329
PRGGYTVFQCA	11	Unmodified	_PRGGYTVFQCA_					0	0	0		ENST00000479308.1_1_3:118955813-118959049:-|nuORF;ENST00000493932.5_2_3:118955813-118959421:-|nuORF;ENST00000483209.5_1_3:118955813-118959226:-|nuORF;ENST00000467604.5_1_3:118955813-118959724:-|nuORF	ENST00000479308.1_1_3:118955813-118959049:-|nuORF	ENST00000479308.1_1_3:118955813-118959049:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.7857666015625	2	599.787315	1197.56008	-0.1186	-7.1133E-05	-3.0017	-0.0018004	-3.1203	-0.0018715	599.7853323113451	16.549	0.28893	16.402	16.305	16.594	-0.14753					17	10	3	0	0	0	1.0442	1	69	69		26.693	1.1189	1	30296			59838	14845	42005	42068	65214	65214					-0.03080000031218333
PRGHRFSH	8	Unmodified	_PRGHRFSH_					0	0	0			REV__ENSG00000214688|ENST00000441508|C10orf105	REV__ENSG00000214688|ENST00000441508|C10orf105	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2558288574219	2	497.259917	992.50528	0.29875	0.00014856	-0.65007	-0.00032325	-0.35132	-0.0001747	497.2599586611899	43.449	0.36019	43.48	43.34	43.7	0.030823					17	9	2	0	0	0	0.027866	1	4042	4042		30.504	0	1	103570	+		59839	28783	42006	42069	65215	65215					0.008727940030325954
PRGKTPEVI	9	Unmodified	_PRGKTPEVI_					0	0	0		nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-5|BDP1;ENST00000508157.3_1_5:70790975-70807035:+|nuORF;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7959899902344	2	498.795466	995.57638	-0.0078223	-3.9017E-06	1.3557	0.00067621	1.3479	0.00067231	498.79599799080165	18.107	0.74334	17.9	17.664	18.408	-0.20669					37	14	4	0	0	0	0.70186	1	253	253		45.952	7.1458	1	222430			59840	5833	42007	42070	65216	65216					0.07841449197189831
PRGLHPAGYID	11	Unmodified	_PRGLHPAGYID_					0	0	0		ENST00000380834.6_1_2:25043232-25043718:+|nuORF	ENST00000380834.6_1_2:25043232-25043718:+|nuORF	ENST00000380834.6_1_2:25043232-25043718:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.36328125	2	598.314554	1194.61456	-0.2775	-0.00016603	-1.0627	-0.00063585	-1.3402	-0.00080188	598.3145749503592	99.131	0.4456	98.962	98.716	99.161	-0.16862					13	9	2	0	0	0	0.024736	1	12243	12243		29.17	7.4843	1	64107			59841	13324	42008	42071	65217	65217					0.025033351118281644
PRGLHPAGYID	11	Unmodified	_PRGLHPAGYID_					0	0	0		ENST00000380834.6_1_2:25043232-25043718:+|nuORF	ENST00000380834.6_1_2:25043232-25043718:+|nuORF	ENST00000380834.6_1_2:25043232-25043718:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	598.314554	1194.61456	0.26306	0.00015739	-4.3439	-0.002599	-4.0809	-0.0024416	598.3122716575234	99.086	0.37253	98.951	98.681	99.054	-0.13526	-0.023318	-0.0021339	NaN	29.17	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56761			59842	13324	42008	42071							0.025033351118281644
PRGLHPAGYID	11	Unmodified	_PRGLHPAGYID_					0	0	0		ENST00000380834.6_1_2:25043232-25043718:+|nuORF	ENST00000380834.6_1_2:25043232-25043718:+|nuORF	ENST00000380834.6_1_2:25043232-25043718:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	598.314554	1194.61456	0.46486	0.00027813	-2.5303	-0.0015139	-2.0654	-0.0012358	598.3141154722446	99.135	0.43795	99.01	98.673	99.111	-0.12458	0.035459	3.6361E-05	NaN	29.17	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54659			59843	13324	42008	42071							0.025033351118281644
PRGLRAAQL	9	Unmodified	_PRGLRAAQL_					0	0	0			REV__ENST00000362057.3_1_9:117266551-117266902:-|nuORF	REV__ENST00000362057.3_1_9:117266551-117266902:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.3026428222656	2	491.30125	980.587947	0.24764	0.00012166	2.5574	0.0012564	2.805	0.0013781	491.3024242683746	95.458	1.0687	95.462	95.009	96.078	0.0041199					59	24	3	0	0	0	0.72875	1	12121	12121		44.117	3.3386	1	1241700	+		59844	30964	42009	42072	65218	65218					0.09687691011163224
PRGLRTFK	8	Unmodified	_PRGLRTFK_					0	0	0		ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF;RPL3|p.P259Sfs*21|1|0.13|ENSG00000100316|chr22:39314760-39314761|-/A|frameshift_variant;ENSG00000100316|ENST00000216146|RPL3	ENST00000484615.5_1_22:39713464-39715605:-|nuORF	ENST00000484615.5_1_22:39713464-39715605:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2527770996094	2	487.798343	973.582134	-1.3681	-0.00066735	1.1657	0.00056862	-0.20241	-9.8736E-05	487.79863670089003	29.822	1.2542	29.901	29.128	30.382	0.078344					43	30	3	0	0	0	0.027866	1	1703	1703		60.972	9.6365	1	143730			59845	2178	42010	42073	65219	65219					0.09428592499511979
PRGPAPPFP	9	Unmodified	_PRGPAPPFP_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2607727050781	2	468.25852	934.502486	0.69365	0.00032481	2.9917	0.0014009	3.6853	0.0017257	468.2599703843451	24.031	2.7749	24.109	23.353	26.127	0.078047					156	63	5	0	0	0	0.78069	1	1022	1022		40.573	5.3719	1	728920			59846	2291	42011	42074	65220	65220					0.03261525825519129
PRGPAPRPL	9	Unmodified	_PRGPAPRPL_					0	0	0		ENST00000308020.5_1_11:450281-450398:+|nuORF	ENST00000308020.5_1_11:450281-450398:+|nuORF	ENST00000308020.5_1_11:450281-450398:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.79119873046875	2	480.790518	959.566484	1.4333	0.0006891	1.2259	0.00058942	2.6592	0.0012785	480.7910285147904	107.28	0.41655	107.28	107.05	107.47	0					23	9	3	0	0	0	0.80658	1	13795	13795		38.806	0.99462	1	327050			59847	12018	42012	42075	65221	65221					0.08508305982456932
PRGPPPPPP	9	Unmodified	_PRGPPPPPP_					0	0	0			REV__ENST00000483000.6_1_2:96676383-96686884:+|nuORF	REV__ENST00000483000.6_1_2:96676383-96686884:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2579040527344	2	456.25852	910.502486	-0.074755	-3.4108E-05	-0.37108	-0.00016931	-0.44584	-0.00020342	456.2583876450436	32.48	3.75	32.48	31.343	35.093	0					278	97	3	0	0	0	0.29104	3	2420	2180;2407;2420		76.847	8.3619	1	17591000	+		59848	33499	42013	42076	65222;65223;65224	65224					0.04365525825505756
PRGPPPPPP	9	Unmodified	_PRGPPPPPP_					0	0	0			REV__ENST00000483000.6_1_2:96676383-96686884:+|nuORF	REV__ENST00000483000.6_1_2:96676383-96686884:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2583923339844	2	456.25852	910.502486	-0.36043	-0.00016445	-0.15612	-7.123E-05	-0.51655	-0.00023568	456.25850296783176	32.466	3.7606	32.477	31.214	34.975	0.011795					259	97	3	0	0	0	0.17455	2	2275	2275;2374		94.006	5.3636	1	19003000	+		59849	33499	42013	42076	65225;65226	65225					0.04365525825505756
PRGPPPPPP	9	Unmodified	_PRGPPPPPP_					0	0	0			REV__ENST00000483000.6_1_2:96676383-96686884:+|nuORF	REV__ENST00000483000.6_1_2:96676383-96686884:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2579345703125	2	456.25852	910.502486	0.10015	4.5696E-05	-0.56547	-0.000258	-0.46532	-0.0002123	456.258324860341	32.29	4.0779	32.353	30.991	35.069	0.062885					273	104	3	0	0	0	0.25032	2	2324	2324;2432		82.305	8.3303	1	17962000	+		59850	33499	42013	42076	65227;65228	65227					0.04365525825505756
PRGPRKPPG	9	Unmodified	_PRGPRKPPG_					0	0	0			REV__nc|ENSG00000156983|P55201-3|BRPF1	REV__nc|ENSG00000156983|P55201-3|BRPF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7587585449219	2	481.288143	960.561733	-0.42797	-0.00020597	-0.098704	-4.7505E-05	-0.52667	-0.00025348	481.2878956674842	21.403	1.397	21.403	20.801	22.198	0					43	28	2	0	0	0	0.024487	1	715	715		17.365	0	1	155910	+		59851	25104	42014	42077	65229	65229					0.07987421839698072
PRGQHPNPL	9	Unmodified	_PRGQHPNPL_					0	0	0		ENSG00000079462|ENST00000262890|PAFAH1B3	ENSG00000079462|ENST00000262890|PAFAH1B3	ENSG00000079462|ENST00000262890|PAFAH1B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2943115234375	2	508.275232	1014.53591	-0.15201	-7.7263E-05	0.93339	0.00047442	0.78138	0.00039716	508.2754264648848	21.289	0.39008	21.36	21.155	21.546	0.071487					9	7	2	0	0	0	0.024381	1	594	594		37.159	12.956	1	11832			59852	1667	42015	42078	65230	65230					0.029225275973999487
PRGQTGGIR	9	Unmodified	_PRGQTGGIR_					0	0	0			REV__ENST00000467201.5_1_7:100174483-100175156:-|nuORF	REV__ENST00000467201.5_1_7:100174483-100175156:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.267578125	2	471.267407	940.520262	0.58846	0.00027732	-0.52761	-0.00024865	0.060846	2.8675E-05	471.2669765118884	19.758	0.90901	19.758	19.07	19.979	0					40	18	5	0	0	0	0.4752	1	463	463		60.972	4.2509	1	556160	+		59853	33065	42016	42079	65231	65231					0.04762241080379681
PRGRGKKL	8	Unmodified	_PRGRGKKL_					0	0	0		ENSG00000074181|ENST00000263388|NOTCH3;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2694396972656	2	456.29851	910.582468	0.048	2.1902E-05	-3.2117	-0.0014655	-3.1637	-0.0014436	456.2971506784922	45.011	0.3177	45.055	44.93	45.247	0.043877					11	8	2	0	0	0	0.027866	1	4288	4288		44.531	0	1	111670			59854	1524	42017	42080	65232	65232					0.1236001221936931
PRGRGLEDGE	10	Unmodified	_PRGRGLEDGE_					0	0	0		ENST00000472073.1_1_22:19121711-19131632:-|nuORF;ENSG00000100056|ENST00000252137|ESS2	ENST00000472073.1_1_22:19121711-19131632:-|nuORF	ENST00000472073.1_1_22:19121711-19131632:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2728271484375	2	543.270344	1084.52613	-0.38195	-0.0002075	3.7047	0.0020127	3.3228	0.0018052	543.2722484787516	55.344	1.2652	55.113	54.565	55.83	-0.23087					101	35	5	0	0	0	0.62431	1	5953	5953		74.255	2.3776	1	8912100			59855	2124	42018	42081	65233	65233					-0.0127470519862527
PRGRIGLLL	9	Unmodified	_PRGRIGLLL_					0	0	0			REV__SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|74|3|anti-sense	REV__SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|74|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.75128173828125	2	497.829643	993.644734	-0.40369	-0.00020097	0.45039	0.00022422	0.046699	2.3248E-05	497.8297403326138	40.643	0.37065	40.666	40.46	40.83	0.023006					20	10	3	0	0	0	0.024412	1	3508	3508		31.955	6.5047	1	238850	+		59856	37634	42019	42082	65234	65234					0.14765738567689368
PRGRIGLLL	9	Unmodified	_PRGRIGLLL_					0	0	0			REV__SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|74|3|anti-sense	REV__SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|74|3|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	497.829643	993.644734	-0.19321	-9.6187E-05	-0.9326	-0.00046428	-1.1258	-0.00056046	497.828858595512	40.65	0.39632	40.425	40.259	40.655	-0.225	-0.044047	-0.00049309	NaN	24.203	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153150	+		59857	37634	42019	42082							0.14765738567689368
PRGRPPSH	8	Unmodified	_PRGRPPSH_					0	0	0			REV__ZBTB32|p.D206Efs*16|1|0.22|ENSG00000011590|chr19:35715242-35715246|GATGG/-|frameshift_variant	REV__ZBTB32|p.D206Efs*16|1|0.22|ENSG00000011590|chr19:35715242-35715246|GATGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.77764892578125	2	452.249018	902.483482	0.40665	0.00018391	-3.6772	-0.001663	-3.2706	-0.0014791	452.2474458379663	41.296	0.20881	41.173	41.086	41.294	-0.12317					6	5	2	0	0	0	0.027866	1	3692	3692		31.955	0	1	60775	+		59858	19936	42020	42083	65235	65235					0.028339892544636314
PRGRPRKLTAM	11	Unmodified	_PRGRPRKLTAM_					0	0	0		nc|ENSG00000173894|Q14781-2|CBX2;ENSG00000173894|ENST00000310942|CBX2	nc|ENSG00000173894|Q14781-2|CBX2	nc|ENSG00000173894|Q14781-2|CBX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8825073242188	2	641.879873	1281.74519	0.76256	0.00048947	3.1943	0.0020503	3.9568	0.0025398	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0521	1	11793	11793		24.519	0.99649	1	3421300			59859	8422	42021	42084	65236	65236					0.11559027559042079
PRGRQGGQPSF	11	Unmodified	_PRGRQGGQPSF_					0	0	0			REV__ENSG00000175325|ENST00000308304|PROP1	REV__ENSG00000175325|ENST00000308304|PROP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8087158203125	2	593.807428	1185.6003	-1.733	-0.0010291	4.2793	0.0025411	2.5463	0.001512	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	0.96599	1	821	821		44.377	0.26039	1	2217700	+		59860	26941	42022	42085	65237	65237					0.014926826835562679
PRGRWLRLA	9	Unmodified	_PRGRWLRLA_					0	0	0		ENSG00000257704|ENST00000552360|INAFM1	ENSG00000257704|ENST00000552360|INAFM1	ENSG00000257704|ENST00000552360|INAFM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.732177734375	2	562.843616	1123.67268	0.90451	0.0005091	0.10128	5.7002E-05	1.0058	0.0005661	562.8433052111882	51.578	0.23124	51.394	51.218	51.449	-0.18404					8	5	2	0	0	0	0.024506	1	5293	5293		30.504	14.862	1	140270			59861	10922	42023	42086	65238	65238					0.11579061547786296
PRGSFSIWHH	10	Unmodified	_PRGSFSIWHH_					0	0	0			REV__ENSG00000187678|ENST00000434127|SPRY4	REV__ENSG00000187678|ENST00000434127|SPRY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	613.29052734375	2	612.307064	1222.59957	-1.5212	-0.00093142	-0.18184	-0.00011134	-1.703	-0.0010428	612.3073447935367	60.462	1.03	60.256	59.938	60.968	-0.20599					56	25	4	0	0	0	0.03519	1	6786	6786		45.972	13.16	1	1029000	+		59862	27957	42024	42087	65239	65239					-0.002821119654981885
PRGSPSFW	8	Unmodified	_PRGSPSFW_					0	0	0		ENST00000463007.5_1_2:240219938-240220016:-|nuORF	ENST00000463007.5_1_2:240219938-240220016:-|nuORF	ENST00000463007.5_1_2:240219938-240220016:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.2447204589844	2	467.232502	932.450451	-0.48161	-0.00022502	3.9326	0.0018375	3.451	0.0016124	467.2341005242811	32.952	0.30451	32.959	32.813	33.117	0.0066223					9	7	2	0	0	0	0.027866	1	2295	2295		26.796	0	1	54348			59863	14727	42025	42088	65240	65240					-0.018476375882414686
PRGSPSSYTV	10	Unmodified	_PRGSPSSYTV_					0	0	0		nc|ENSG00000278259|Q96H55-4|MYO19;MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.7658081054688	2	525.764363	1049.51417	-0.5916	-0.00031104	3.3928	0.0017838	2.8012	0.0014728	525.7660322936745	30.996	1.033	31.007	30.709	31.742	0.011799					72	24	6	0	0	0	1.0236	1	2038	2038		42.864	3.6114	1	3318100			59864	11063	42026	42089	65241	65241					-0.008603219418091612
PRGSVCNVL	9	Unmodified	_PRGSVCNVL_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;DMXL2|p.F1728Sfs*3|1|0.06|ENSG00000104093|chr15:51487988-51487988|A/-|frameshift_variant	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7541809082031	2	472.752744	943.490935	-0.39794	-0.00018813	2.1172	0.0010009	1.7193	0.0008128	472.7538756619408	39.8	1.1404	39.823	39.455	40.596	0.023727					86	31	4	0	0	0	0.56934	1	3371	3371		54.776	5.3348	1	14108000			59865	2544	42027	42090	65242	65242					0.016929607398765256
PRGTAAPLP	9	Unmodified	_PRGTAAPLP_					0	0	0			REV__ENST00000220509.9_1_15:41191948-41192161:+|nuORF	REV__ENST00000220509.9_1_15:41191948-41192161:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.2553405761719	2	440.255977	878.497401	-0.86661	-0.00038153	1.1759	0.00051768	0.30925	0.00013615	440.2563693117916	37.93	1.2463	37.959	37.447	38.693	0.029068					68	34	4	0	0	0	0.35646	1	3086	3086		68.787	2.9837	1	1750000	+		59866	29340	42028	42091	65243	65243					0.053292219628815474
PRGTLPEAR	9	Unmodified	_PRGTLPEAR_					0	0	0		ENST00000396842.6_1_3:15469153-15471420:+|nuORF	ENST00000396842.6_1_3:15469153-15471420:+|nuORF	ENST00000396842.6_1_3:15469153-15471420:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7815856933594	2	498.78289	995.551228	-0.49131	-0.00024506	-0.108	-5.3867E-05	-0.5993	-0.00029892	498.78264626959907	23.071	0.90554	23.147	22.656	23.561	0.076241					38	20	3	0	0	0	0.70156	1	830	830		45.972	1.8554	1	367890			59867	13565	42029	42092	65244	65244					0.05327394394601015
PRGTLPEAR	9	Unmodified	_PRGTLPEAR_					0	0	0		ENST00000396842.6_1_3:15469153-15471420:+|nuORF	ENST00000396842.6_1_3:15469153-15471420:+|nuORF	ENST00000396842.6_1_3:15469153-15471420:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.78289	995.551228	-0.20595	-0.00010272	-1.4265	-0.00071153	-1.6325	-0.00081425	498.7825577457644	23.182	0.85761	23.182	22.665	23.523	0	0.028349	-0.0012046	NaN	45.972	67	19	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420090			59868	13565	42029	42092							0.05327394394601015
PRGTLPEAR	9	Unmodified	_PRGTLPEAR_					0	0	0		ENST00000396842.6_1_3:15469153-15471420:+|nuORF	ENST00000396842.6_1_3:15469153-15471420:+|nuORF	ENST00000396842.6_1_3:15469153-15471420:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.78289	995.551228	-0.49068	-0.00024474	0.067226	3.3531E-05	-0.42346	-0.00021121	498.7827511674152	23.192	0.81816	23.131	22.568	23.386	-0.060862	-0.022369	0.00028553	NaN	45.972	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404060			59869	13565	42029	42092							0.05327394394601015
PRGVAGTALL	10	Unmodified	_PRGVAGTALL_					0	0	0		ENST00000530142.5_1_8:145581690-145582740:-|nuORF	ENST00000530142.5_1_8:145581690-145582740:-|nuORF	ENST00000530142.5_1_8:145581690-145582740:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.75872802734375	2	477.790184	953.565815	-0.19581	-9.3554E-05	0.076526	3.6563E-05	-0.11928	-5.6991E-05	477.78997993832417	23.282	0.44508	23.221	23.069	23.514	-0.060862					15	10	2	0	0	0	0.03519	1	875	875		34.173	6.2903	1	70993			59870	16223	42030	42093	65245	65245					0.08717466542748298
PRGVKGAK	8	Unmodified	_PRGVKGAK_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.87890625	2	406.758687	811.502821	0.24371	9.913E-05	-1.9194	-0.00078074	-1.6757	-0.00068161	406.7576911649245	20.248	0.33782	20.024	19.829	20.167	-0.22344					9	6	2	0	0	0	0.027866	1	501	501		7.6903	0	1	10271			59871	5538	42031	42094	65246	65246					0.08952945545365765
PRGVPCFRTP	10	Carbamidomethyl (C)	_PRGVPC(Carbamidomethyl (C))FRTP_	PRGVPC(1)FRTP		PRGVPC(70)FRTP		0	1	0		ENSG00000141568|ENST00000335255|FOXK2;nc|ENSG00000141568|Q01167-2|FOXK2;ENST00000571160.1_1_17:80540661-80543138:+|nuORF	ENSG00000141568|ENST00000335255|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	593.8090209960938	2	593.811125	1185.6077	-1.1813	-0.00070148	-2.5596	-0.0015199	-3.741	-0.0022214	593.8096367420404	22.813	2.4224	22.737	22.082	24.505	-0.075296					155	54	4	0	0	0	0.66532	1	841	841		69.628	13.194	1	2203900			59872	5504	42032	42095	65247	65247	72				0.02231698959599271
PRGWLSPHVW	10	Unmodified	_PRGWLSPHVW_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.8951110839844	3	412.220847	1233.64071	-0.010437	-4.3023E-06	-3.9511	-0.0016287	-3.9616	-0.001633	412.21909260761726	30.93	0.86763	30.778	30.257	31.124	-0.15231					33	20	2	0	0	0	0.03519	1	1925	1925		33.922	10.544	1	72355	+		59873	19906	42033	42096	65248	65248					0.03323649073968227
PRHGGLTL	8	Unmodified	_PRHGGLTL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2471008300781	2	425.748319	849.482085	0.48354	0.00020586	4.4256	0.0018842	4.9091	0.00209	425.74999579748123	102.82	0.5914	102.82	102.59	103.18	-0.0046005					22	14	2	0	0	0	0.027866	1	13154	13154		20.482	0	1	218250			59874	1297	42034	42097	65249	65249					0.051323551656992095
PRHIIINST	9	Unmodified	_PRHIIINST_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.78271484375	2	525.806365	1049.59818	-0.53571	-0.00028168	0.54711	0.00028768	0.011402	5.9953E-06	525.8061039545513	20.012	0.42551	19.907	19.654	20.079	-0.10477					15	8	2	0	0	0	0.024539	1	489	489		27.882	19.06	1	104860			59875	1082	42035	42098	65250	65250					0.07536253945772842
PRHIIINST	9	Unmodified	_PRHIIINST_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.806365	1049.59818	1.9986	0.0010509	-1.8994	-0.00099873	0.099132	5.2124E-05	525.8050101113627	19.928	0.43166	19.994	19.783	20.215	0.066195	0.10797	-0.0017232	NaN	20.947	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113960			59876	1082	42035	42098							0.07536253945772842
PRHLRKWK	8	Unmodified	_PRHLRKWK_					0	0	0		ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7669677734375	2	560.846159	1119.67777	-0.47876	-0.00026851	-0.45462	-0.00025497	-0.93338	-0.00052348	560.845694482034	22.946	0.32332	22.761	22.554	22.877	-0.18539					12	6	2	0	0	0	0.027866	1	841	841		8.2313	0	1	101120			59877	14700	42036	42099	65251	65251					0.12271365410401813
PRHPEPST	8	Unmodified	_PRHPEPST_					0	0	0			REV__ENSG00000163354|ENST00000368424|DCST2	REV__ENSG00000163354|ENST00000368424|DCST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.261474609375	2	460.732866	919.451179	-0.6486	-0.00029883	1.1473	0.00052859	0.49867	0.00022975	460.73329972910574	28.177	0.35594	28.177	27.963	28.318	0					22	8	3	0	0	0	0.027866	1	1628	1628		60.972	11.53	1	386380	+		59878	25556	42037	42100	65252	65252					-0.011768429391850077
PRHTSLSTF	9	Unmodified	_PRHTSLSTF_					0	0	0			REV__nc|ENSG00000109625|Q66K79-3|CPZ	REV__nc|ENSG00000109625|Q66K79-3|CPZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2678833007812	2	523.274898	1044.53524	-1.059	-0.00055412	1.3989	0.00073203	0.33998	0.0001779	523.27537105313	43.079	0.61773	43.079	42.823	43.44	0					26	16	2	0	0	0	0.024205	1	4041	4041		53.351	21.397	1	229510	+		59879	21803	42038	42101	65253	65253					0.014756881576886371
PRHTSLSTF	9	Unmodified	_PRHTSLSTF_					0	0	0			REV__nc|ENSG00000109625|Q66K79-3|CPZ	REV__nc|ENSG00000109625|Q66K79-3|CPZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2681884765625	2	523.274898	1044.53524	-0.59293	-0.00031027	0.35081	0.00018357	-0.24212	-0.00012669	523.2752054909499	43.377	0.50867	43.238	42.885	43.393	-0.13929					25	13	2	0	0	0	0.024205	1	4065	4065		63.306	3.0123	1	269250	+		59880	21803	42038	42101	65254	65254					0.014756881576886371
PRHVSSTK	8	Unmodified	_PRHVSSTK_					0	0	0			REV__nc|ENSG00000077514|Q15054-3|POLD3	REV__nc|ENSG00000077514|Q15054-3|POLD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.27508544921875	2	456.256508	910.498464	-0.040431	-1.8447E-05	0.57711	0.00026331	0.53668	0.00024486	456.2565372568405	27.475	1.5745	27.475	26.658	28.232	0					56	40	2	0	0	0	0.027866	1	1513	1513		60.972	36.468	1	277210	+		59881	20593	42039	42102	65255	65255					0.03963436331810044
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.793701171875	2	528.793455	1055.57236	0.088186	4.6632E-05	0.23794	0.00012582	0.32612	0.00017245	528.7934506158327	37.167	0.65526	36.974	36.735	37.39	-0.193					41	16	4	0	0	0	0.35364	1	2960	2960		85.862	6.3728	1	2010800			59882	4128	42040	42103	65256	65256					0.04679359703482078
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.793455	1055.57236	0.72364	0.00038266	-0.87785	-0.0004642	-0.15421	-8.1544E-05	528.7929934657925	37.117	0.52343	37.117	36.927	37.45	0	0.0833	-0.0010339	NaN	85.862	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818740			59883	4128	42040	42103							0.04679359703482078
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.793455	1055.57236	-0.02137	-1.13E-05	-0.047717	-2.5232E-05	-0.069087	-3.6533E-05	528.7933536310371	37.023	0.48361	36.959	36.749	37.232	-0.063385	-0.074161	-0.00015594	NaN	85.862	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	814980			59884	4128	42040	42103							0.04679359703482078
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.793455	1055.57236	-0.067978	-3.5947E-05	-0.17412	-9.2073E-05	-0.2421	-0.00012802	528.7932910463669	37.133	0.53167	37.165	36.918	37.45	0.032269	0.13182	-0.00028962	NaN	85.862	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780440			59885	4128	42040	42103							0.04679359703482078
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	528.793455	1055.57236	-1.1911	-0.00062982	1.3905	0.00073528	0.19943	0.00010546	528.7940733424088	37.228	0.66247	37.008	36.767	37.429	-0.2195	-0.025399	0.0013651	NaN	85.862	41	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1800700			59886	4128	42040	42103							0.04679359703482078
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	528.793455	1055.57236	0.12853	6.7964E-05	0.042695	2.2577E-05	0.17122	9.054E-05	528.7933119970511	37.186	0.8544	36.977	36.726	37.58	-0.2092	-0.056348	-6.032E-05	NaN	85.862	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1931400			59887	4128	42040	42103							0.04679359703482078
PRIEYSDCLKV	11	Unmodified	_PRIEYSDCLKV_					0	0	0			REV__nc|ENSG00000125944|O43390-4|HNRNPR	REV__nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.2456970214844	3	441.56395	1321.67002	-0.17142	-7.5695E-05	2.217	0.00097895	2.0456	0.00090326	441.56475622264554	21.829	0.47477	21.739	21.545	22.02	-0.090092					19	9	3	0	0	0	0.024726	1	676	676		32.034	6.9663	1	30176	+		59888	22862	42041	42104	65257	65257					0.022053805172845387
PRIFQAVV	8	Unmodified	_PRIFQAVV_					0	0	0		ENSG00000130304|ENST00000252595|SLC27A1;ENST00000598424.5_1_19:17597384-17597952:+|nuORF	ENSG00000130304|ENST00000252595|SLC27A1	ENSG00000130304|ENST00000252595|SLC27A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7550354003906	2	465.281995	928.549437	-0.74987	-0.0003489	-3.9895	-0.0018563	-4.7394	-0.0022052	465.279863712992	23.971	0.43202	23.924	23.656	24.088	-0.047148					12	9	2	0	0	0	0.027866	1	971	971		42.474	21.993	1	156290			59889	4409	42042	42105	65258	65258					0.08230385376657523
PRIKLAGK	8	Unmodified	_PRIKLAGK_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.766845703125	2	441.797812	881.581071	-0.91302	-0.00040337	1.0694	0.00047248	0.15643	6.9108E-05	441.79810877773434	22.279	0.43429	22.353	22.125	22.559	0.073954					13	8	2	0	0	0	0.027866	1	728	728		33.516	8.0654	1	46920			59890	2142	42043	42106	65259	65259					0.13554378130606892
PRIKLAGK	8	Unmodified	_PRIKLAGK_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	441.797812	881.581071	-0.24533	-0.00010838	0.98156	0.00043365	0.73624	0.00032527	441.79804582468284	22.326	0.37341	22.326	22.152	22.525	0	-0.018727	2.6273E-05	NaN	33.516	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37536			59891	2142	42043	42106							0.13554378130606892
PRIKLAGK	8	Unmodified	_PRIKLAGK_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.797812	881.581071	-0.1273	-5.6242E-05	0.79156	0.00034971	0.66426	0.00029347	441.79793286289623	22.43	0.32881	22.355	22.177	22.506	-0.075296	0.01023	-0.00014161	NaN	33.516	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30745			59892	2142	42043	42106							0.13554378130606892
PRINGKRGF	9	Unmodified	_PRINGKRGF_					0	0	0			REV__ENSG00000138311|ENST00000395254|ZNF365	REV__ENSG00000138311|ENST00000395254|ZNF365	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8125610351562	2	522.8067	1043.59885	-0.36517	-0.00019091	2.4345	0.0012728	2.0693	0.0010819	522.8069775731238	41.857	0.46606	41.857	41.688	42.154	0					17	13	2	0	0	0	0.024487	1	3783	3783		17.365	3.9109	1	80030	+		59893	23839	42044	42107	65260	65260					0.0787909338546342
PRIPPKPK	8	Unmodified	_PRIPPKPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2443542480469	2	466.805637	931.596721	0.8223	0.00038385	0.47068	0.00021972	1.293	0.00060357	466.8057235592853	32.536	0.86372	32.599	32.352	33.216	0.062885					40	22	2	0	0	0	0.027866	1	2234	2234		13.775	4.3048	1	105880			59894	6479;18400	42045	42108	65261	65261					0.12818664647659261
PRIQSQRY	8	Unmodified	_PRIQSQRY_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2872314453125	2	524.28834	1046.56213	-1.5836	-0.00083028	0.15232	7.9861E-05	-1.4313	-0.00075042	524.2887173959433	28.546	1.075	28.546	28.037	29.112	0					73	25	5	0	0	0	1.0574	1	1674	1674		25.45	0.93098	1	3022700			59895	9952;677	42046	42109	65262	65262					0.04070796768905893
PRIQSQRY	8	Unmodified	_PRIQSQRY_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.288330078125	2	524.28834	1046.56213	-0.59781	-0.00031342	0.0086703	4.5457E-06	-0.58914	-0.00030888	524.2883165896219	28.42	0.92009	28.251	27.807	28.727	-0.16897					56	21	3	0	0	0	0.96719	1	1681	1681		42.474	8.3019	1	3614000			59896	9952;677	42046	42109	65263	65263					0.04070796768905893
PRIQSQRY	8	Unmodified	_PRIQSQRY_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2882690429688	2	524.28834	1046.56213	-0.42673	-0.00022373	-0.1702	-8.9236E-05	-0.59693	-0.00031296	524.2882290766548	28.432	0.77021	28.28	27.885	28.655	-0.15195					63	18	5	0	0	0	0.99042	2	1624	1624;1636		38.806	8.4884	1	4593400			59897	9952;677	42046	42109	65264;65265	65264					0.04070796768905893
PRISHEVL	8	Unmodified	_PRISHEVL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;ENST00000495411.1_1_17:1634478-1636223:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.262939453125	2	475.774534	949.534515	1.2029	0.00057231	-1.3107	-0.0006236	-0.10779	-5.1286E-05	475.77367659930303	42.136	0.97115	42.136	41.888	42.859	0					42	27	2	0	0	0	0.027866	1	3971	3971		44.117	9.9443	1	1195700			59898	7729	42047	42110	65266	65266					0.057728935086515776
PRISHEVL	8	Unmodified	_PRISHEVL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;ENST00000495411.1_1_17:1634478-1636223:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.774534	949.534515	0.32502	0.00015464	-0.31605	-0.00015037	0.008971	4.2682E-06	475.77416797062455	42.332	0.68527	42.2	41.953	42.638	-0.13219	-0.0067282	0.00028325	NaN	44.117	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1048600			59899	7729	42047	42110							0.057728935086515776
PRISHEVL	8	Unmodified	_PRISHEVL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;ENST00000495411.1_1_17:1634478-1636223:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.774534	949.534515	0.13986	6.6541E-05	-0.14731	-7.0087E-05	-0.0074543	-3.5466E-06	475.77423274169	42.258	0.87268	42.284	42.024	42.897	0.026016	0.077389	0.00044382	NaN	44.117	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1029800			59900	7729	42047	42110							0.057728935086515776
PRISLHFL	8	Unmodified	_PRISLHFL_					0	0	0		ENST00000586659.5_1_19:11275055-11275190:-|nuORF	ENST00000586659.5_1_19:11275055-11275190:-|nuORF	ENST00000586659.5_1_19:11275055-11275190:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7962341308594	2	491.795269	981.575986	0.18124	8.9134E-05	0.94681	0.00046563	1.128	0.00055477	491.7954877774719	47.616	1.6243	47.429	46.316	47.94	-0.18684					123	44	5	0	0	0	1.0338	1	4687	4687		31.955	0	1	5640400			59901	17249	42048	42111	65267	65267					0.08446074267976655
PRITSLGMEQS	11	Unmodified	_PRITSLGMEQS_					0	0	0			REV__ENST00000480825.6_1_1:36934562-36937301:-|nuORF	REV__ENST00000480825.6_1_1:36934562-36937301:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.8790283203125	3	406.876417	1217.60742	3.4663	0.0014103	3.3365	0.0013576	6.8028	0.0027679	406.8777788220711	19.814	1.6126	19.88	19.488	21.101	0.066195					89	32	5	0	0	0	0.99648	1	431	431		37.6	1.1531	1	1047400	+		59902	32972	42049	42112	65268	65268					0.007322344491285548
PRITSLGMEQS	11	Unmodified	_PRITSLGMEQS_					0	0	0			REV__ENST00000480825.6_1_1:36934562-36937301:-|nuORF	REV__ENST00000480825.6_1_1:36934562-36937301:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.8788146972656	3	406.876417	1217.60742	1.6343	0.00066496	2.6917	0.0010952	4.326	0.0017601	406.87726413832445	20.138	1.2696	19.939	19.507	20.776	-0.19843					89	25	5	0	0	0	0.97559	1	508	508		42.243	1.1336	1	2716700	+		59903	32972	42049	42112	65269	65269					0.007322344491285548
PRITSLGMEQS	11	Unmodified	_PRITSLGMEQS_					0	0	0			REV__ENST00000480825.6_1_1:36934562-36937301:-|nuORF	REV__ENST00000480825.6_1_1:36934562-36937301:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.87890625	3	406.876417	1217.60742	0.39572	0.00016101	1.5431	0.00062786	1.9389	0.00078887	406.8777942579985	20.161	1.8703	19.938	19.434	21.304	-0.22344					56	37	4	0	0	0	0.78452	1	501	501		58.63	10.67	1	2563800	+		59904	32972	42049	42112	65270	65270					0.007322344491285548
PRITYPLVH	9	Unmodified	_PRITYPLVH_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168;nc|ENSG00000146802|Q9H0V1-2|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2953491210938	2	548.319109	1094.62366	-0.015564	-8.5342E-06	-0.41115	-0.00022544	-0.42671	-0.00023397	548.3201993841345	19.603	0.3203	19.603	19.414	19.735	0					11	6	3	0	0	0	0.024436	1	420	420		30.504	0	1	31219			59905	5907	42050	42113	65271	65271					0.08013728468154113
PRKAGHTL	8	Unmodified	_PRKAGHTL_					0	0	0		KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant;ENSG00000183655|ENST00000337975|KLHL25	KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	440.2615966796875	2	440.261594	878.508634	0.55027	0.00024226	-0.18725	-8.244E-05	0.36302	0.00015982	440.2613616965321	19.581	1.0064	19.581	19.268	20.274	0					56	20	4	0	0	0	0.845	2	432	423;432		55.504	9.5523	1	1056200			59906	9255	42051	42114	65272;65273	65273					0.06452044057050443
PRKAGHTL	8	Unmodified	_PRKAGHTL_					0	0	0		KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant;ENSG00000183655|ENST00000337975|KLHL25	KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.2615966796875	2	440.261594	878.508634	-0.063303	-2.787E-05	0.44743	0.00019699	0.38413	0.00016912	440.26163688483837	19.83	1.1112	19.711	19.348	20.459	-0.11872					57	22	4	0	0	0	0.87148	3	478	451;465;478		53.351	9.4519	1	862290			59907	9255	42051	42114	65274;65275;65276	65276					0.06452044057050443
PRKAGHTL	8	Unmodified	_PRKAGHTL_					0	0	0		KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant;ENSG00000183655|ENST00000337975|KLHL25	KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	KLHL25|p.W482Lfs*38|1|0.15|ENSG00000183655|chr15:85768359-85768374|GTACCGCCAAGGCTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.2617492675781	2	440.261594	878.508634	2.2659	0.0009976	-2.0106	-0.00088521	0.25528	0.00011239	440.2606120683346	19.74	1.2191	19.806	19.488	20.707	0.066195					64	24	4	0	0	0	0.845	3	413	413;425;438		55.504	13.997	1	1083900			59908	9255	42051	42114	65277;65278;65279	65277					0.06452044057050443
PRKAPHQP	8	Unmodified	_PRKAPHQP_					0	0	0		ENST00000268059.10_1_15:74328231-74328504:+|nuORF	ENST00000268059.10_1_15:74328231-74328504:+|nuORF	ENST00000268059.10_1_15:74328231-74328504:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2539978027344	2	465.767043	929.519533	-0.12377	-5.7649E-05	-1.1069	-0.00051558	-1.2307	-0.00057323	465.7663364906134	39.384	0.84296	39.408	39.135	39.978	0.023727					56	23	4	0	0	0	0.027866	1	3415	3415		19.36	0	1	2130000			59909	11624	42052	42115	65280	65280					0.051954464313212156
PRKAPHQP	8	Unmodified	_PRKAPHQP_					0	0	0		ENST00000268059.10_1_15:74328231-74328504:+|nuORF	ENST00000268059.10_1_15:74328231-74328504:+|nuORF	ENST00000268059.10_1_15:74328231-74328504:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.767043	929.519533	-0.29138	-0.00013572	-1.0801	-0.00050307	-1.3715	-0.00063879	465.7663520923458	39.199	0.76328	39.199	38.97	39.733	0	-0.051786	-0.00010852	NaN	12.207	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2405900			59910	11624	42052	42115							0.051954464313212156
PRKAPHQP	8	Unmodified	_PRKAPHQP_					0	0	0		ENST00000268059.10_1_15:74328231-74328504:+|nuORF	ENST00000268059.10_1_15:74328231-74328504:+|nuORF	ENST00000268059.10_1_15:74328231-74328504:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.767043	929.519533	-0.62373	-0.00029051	-0.72699	-0.00033861	-1.3507	-0.00062912	465.7665348233851	39.244	0.77309	39.145	38.843	39.616	-0.098755	-0.10548	0.00022042	NaN	12.207	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2142800			59911	11624	42052	42115							0.051954464313212156
PRKGIQVTK	9	Unmodified	_PRKGIQVTK_					0	0	0		ENST00000495131.1_1_1:89521662-89521803:-|nuORF	ENST00000495131.1_1_1:89521662-89521803:-|nuORF	ENST00000495131.1_1_1:89521662-89521803:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8250732421875	2	513.824558	1025.63456	0.021992	1.13E-05	-0.32062	-0.00016474	-0.29863	-0.00015344	513.8245595828838	39.531	0.87872	39.531	39.183	40.062	0					70	24	4	0	0	0	0.94809	1	3449	3449		29.15	0	1	12095000			59912	15541	42053	42116	65281	65281					0.12277130842448969
PRKGPQVI	8	Unmodified	_PRKGPQVI_					0	0	0			REV__ENSG00000109787|ENST00000261438|KLF3	REV__ENSG00000109787|ENST00000261438|KLF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.235107421875	2	447.779619	893.544686	0.014619	6.5461E-06	-0.20127	-9.0124E-05	-0.18665	-8.3578E-05	447.7803098062215	26.59	0.29358	26.59	26.489	26.783	0					9	6	2	0	0	0	0.027866	1	1379	1379		18.324	0	1	26108	+		59913	21815	42054	42117	65282	65282					0.09365501233889972
PRKGRAAK	8	Unmodified	_PRKGRAAK_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7144470214844	2	442.28286	882.551168	-0.10917	-4.8282E-05	-3.5962	-0.0015906	-3.7054	-0.0016388	442.28155888961686	31.165	0.34288	31.177	30.914	31.257	0.011797					10	7	2	0	0	0	0.027866	1	2048	2048		4.3163	0	1	53363	+		59914	21245	42055	42118	65283	65283					0.10519439185259216
PRKGYSCPE	9	Unmodified	_PRKGYSCPE_					0	0	0		ENSG00000213015|ENST00000325333|ZNF580	ENSG00000213015|ENST00000325333|ZNF580	ENSG00000213015|ENST00000325333|ZNF580	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.79833984375	2	518.747659	1035.48076	-1.2821	-0.0006651	3.8694	0.0020073	2.5873	0.0013422	518.7496092296504	30.189	0.6233	30.263	30.003	30.626	0.074314					23	14	2	0	0	0	0.024418	1	1916	1916		45.972	3.5761	1	205190			59915	10486	42056	42119	65284	65284					-0.03555646985364547
PRKHQPSV	8	Unmodified	_PRKHQPSV_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.77276611328125	2	474.772326	947.530098	0.050788	2.4113E-05	-0.26251	-0.00012463	-0.21173	-0.00010052	474.7722953484883	23.256	1.9625	23.195	21.807	23.77	-0.060862					103	43	4	0	0	0	0.99042	1	910	910		38.806	1.647	1	2833900			59916	4054	42057	42120	65285	65285					0.05423429085760745
PRKKFPPM	8	Unmodified	_PRKKFPPM_					0	0	0		nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2082214355469	2	500.791672	999.568792	-0.057766	-2.8929E-05	-3.3765	-0.0016909	-3.4343	-0.0017199	501.29109983561045	41.888	1.2968	41.765	41.346	42.643	-0.12299					120	34	6	0	0	0	0.027866	1	3742	3742		37.028	5.4496	1	4131500			59917	1122	42058	42121	65286	65286					0.06899018395915846
PRKKFPPM	8	Unmodified	_PRKKFPPM_					0	0	0		nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.791672	999.568792	-0.10021	-5.0182E-05	3.3052	0.0016552	3.2049	0.001605	500.7928483403157	41.493	0.48872	41.37	41.086	41.574	-0.12317	-0.19751	0.0057297	NaN	28.254	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202430			59918	1122	42058	42121							0.06899018395915846
PRKLHNVQPSH	11	Unmodified	_PRKLHNVQPSH_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.2460632324219	3	438.245944	1311.716	-0.29726	-0.00013027	2.3946	0.0010494	2.0974	0.00091917	438.2467666049744	27.959	2.6891	27.955	27.178	29.868	-0.0042019					182	67	4	0	0	0	1.0408	1	1593	1593		27.644	0	1	1440200	+		59919	26047	42059	42122	65287	65287					0.07261206534417397
PRKLTSTK	8	Unmodified	_PRKLTSTK_					0	0	0			REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.27178955078125	2	465.790184	929.565815	0.1082	5.04E-05	-0.17363	-8.0875E-05	-0.065426	-3.0475E-05	465.78995595683784	36.566	0.48202	36.35	36.088	36.57	-0.21661					27	11	3	0	0	0	0.027866	1	2832	2832		21.96	0	1	409430	+		59920	32216	42060	42123	65288	65288					0.09821466542734925
PRKLTSTK	8	Unmodified	_PRKLTSTK_					0	0	0			REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.790184	929.565815	-0.03316	-1.5445E-05	-0.17836	-8.308E-05	-0.21152	-9.8525E-05	465.78990914398844	36.608	0.40227	36.402	36.164	36.566	-0.20518	0.047189	0.00050989	NaN	15.642	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289190	+		59921	32216	42060	42123							0.09821466542734925
PRKLVSKPN	9	Unmodified	_PRKLVSKPN_					0	0	0			REV__ENSG00000155792|ENST00000286234|DEPTOR	REV__ENSG00000155792|ENST00000286234|DEPTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.307861328125	2	519.824558	1037.63456	-0.78894	-0.00041011	4.1219	0.0021426	3.3329	0.0017325	519.8264723018185	48.641	1.0381	48.641	48.174	49.212	0					43	29	2	0	0	0	0.024209	1	5042	5042		47.657	6.8792	1	145750	+		59922	25028	42061	42124	65289	65289					0.11725130842478393
PRKLVSKPN	9	Unmodified	_PRKLVSKPN_					0	0	0			REV__ENSG00000155792|ENST00000286234|DEPTOR	REV__ENSG00000155792|ENST00000286234|DEPTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3075561523438	2	519.824558	1037.63456	-0.56489	-0.00029364	3.6026	0.0018727	3.0377	0.0015791	519.8262630618739	48.835	1.0593	48.682	48.159	49.218	-0.15277					47	29	2	0	0	0	0.024209	1	5050	5050		66.429	24.033	1	115760	+		59923	25028	42061	42124	65290	65290					0.11725130842478393
PRKLVSKPN	9	Unmodified	_PRKLVSKPN_					0	0	0			REV__ENSG00000155792|ENST00000286234|DEPTOR	REV__ENSG00000155792|ENST00000286234|DEPTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3081665039062	2	519.824558	1037.63456	-1.4744	-0.00076645	1.6803	0.00087348	0.20588	0.00010702	519.8254199716927	49.476	0.74379	49.55	49.169	49.912	0.074196					30	19	2	0	0	0	0.024523	1	4999	4999		29.15	0	1	111830	+		59924	25028	42061	42124	65291	65291					0.11725130842478393
PRKNAPKT	8	Unmodified	_PRKNAPKT_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7487487792969	2	456.274701	910.534849	-0.40319	-0.00018397	-0.18119	-8.2671E-05	-0.58438	-0.00026664	456.2743679045856	29.513	1.0701	29.516	29.129	30.2	0.0031376					42	26	3	0	0	0	0.027866	1	1899	1899		23.042	10.083	1	283500	+		59925	26683	42062	42125	65292	65292					0.07600313228499544
PRKNTFER	8	Unmodified	_PRKNTFER_					0	0	0		ENST00000487330.1_1_9:74975472-74979818:-|nuORF	ENST00000487330.1_1_9:74975472-74979818:-|nuORF	ENST00000487330.1_1_9:74975472-74979818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2882690429688	2	524.28834	1046.56213	-0.59781	-0.00031342	0.0086703	4.5457E-06	-0.58914	-0.00030888	524.2883165896219	28.42	0.92009	28.251	27.807	28.727	-0.16897					56	21	3	0	0	0	0.68164	1	1644	1644		68.787	7.8149	1	3614000			59926	15365	42063	42126	65293	65293					0.04070796768883156
PRKNWRASSK	10	Unmodified	_PRKNWRASSK_					0	0	0		ENST00000519559.1_1_8:52752187-52758305:-|nuORF	ENST00000519559.1_1_8:52752187-52758305:-|nuORF	ENST00000519559.1_1_8:52752187-52758305:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.73468017578125	3	410.566906	1228.67889	-0.20382	-8.3684E-05	0.12175	4.9985E-05	-0.08208	-3.3699E-05	410.56692641618207	31.096	0.32376	30.855	30.711	31.034	-0.24109					12	7	2	0	0	0	0.03519	1	2042	2042		14.694	8.3728	1	72091			59927	15956	42064	42127	65294	65294					0.07369534988652049
PRKPGPPG	8	Unmodified	_PRKPGPPG_					0	0	0		COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	403.2375183105469	2	403.237587	804.460622	-0.077957	-3.1435E-05	0.42225	0.00017027	0.34429	0.00013883	403.237626781048	29.823	1.2726	29.823	29.112	30.384	0					85	31	4	0	0	0	1.0572	1	1837	1837		28.254	1.4582	1	3092100			59928	467	42065	42128	65295	65295					0.05056970137002281
PRKPGPPG	8	Unmodified	_PRKPGPPG_					0	0	0		COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.23748779296875	2	403.237587	804.460622	-0.0070464	-2.8414E-06	0.29056	0.00011717	0.28352	0.00011433	403.23755128637663	29.767	1.5666	29.776	29.098	30.665	0.0086193					91	38	4	0	0	0	1.0572	1	1822	1822		28.254	0	1	2744200			59929	467	42065	42128	65296	65296					0.05056970137002281
PRKPGPPG	8	Unmodified	_PRKPGPPG_					0	0	0		COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	COL19A1|p.G418R|1|0.1|ENSG00000082293|chr6:70102196-70102196|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2376708984375	2	403.237587	804.460622	1.486	0.00059922	-1.2383	-0.00049933	0.24772	9.9891E-05	403.2369317697124	29.549	1.2375	29.627	28.979	30.216	0.078344					78	30	3	0	0	0	1.0572	1	1751	1751		28.254	1.4582	1	3667800			59930	467	42065	42128	65297	65297					0.05056970137002281
PRKPLHTDRT	10	Unmodified	_PRKPLHTDRT_					0	0	0		ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.8875732421875	3	407.566794	1219.67855	0.1872	7.6298E-05	-0.3732	-0.0001521	-0.186	-7.5807E-05	407.5666069426389	27.701	0.76175	27.459	27.163	27.924	-0.24217					45	17	3	0	0	0	0.03519	1	1531	1531		26.063	15.477	1	942080			59931	11515	42066	42129	65298	65298					0.07750115268754598
PRKPLHTDRT	10	Unmodified	_PRKPLHTDRT_					0	0	0		ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	407.566794	1219.67855	-0.21125	-8.6097E-05	0.25986	0.00010591	0.048615	1.9814E-05	407.5668372508421	27.572	0.70856	27.404	27.099	27.808	-0.16816	-0.045568	0.00044921	NaN	26.063	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	933320			59932	11515	42066	42129							0.07750115268754598
PRKPLHTDRT	10	Unmodified	_PRKPLHTDRT_					0	0	0		ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	407.566794	1219.67855	-0.25556	-0.00010416	0.24026	9.7921E-05	-0.0153	-6.2359E-06	407.5668073097625	27.642	0.65698	27.485	27.185	27.842	-0.15664	0.03597	0.00042524	NaN	26.063	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1056200			59933	11515	42066	42129							0.07750115268754598
PRKPPALSR	9	Unmodified	_PRKPPALSR_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.31634521484375	2	511.3169	1020.61925	-0.40085	-0.00020496	0.0018113	9.2615E-07	-0.39904	-0.00020404	511.3167968113799	22.52	1.4526	22.444	21.514	22.966	-0.075296					61	30	4	0	0	0	0.75397	1	782	782		42.396	1.8235	1	462260			59934	1061	42067	42130	65299	65299					0.10976264045280004
PRKPPALSR	9	Unmodified	_PRKPPALSR_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3159484863281	2	511.3169	1020.61925	-1.2788	-0.00065385	0.89716	0.00045873	-0.3816	-0.00019512	511.31725009157276	22.363	1.2903	22.437	21.594	22.884	0.073954					60	26	4	0	0	0	0.62163	1	727	727		51.335	5.3835	1	461210			59935	1061	42067	42130	65300	65300					0.10976264045280004
PRKPVSQNI	9	Unmodified	_PRKPVSQNI_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8191528320312	2	519.806365	1037.59818	-1.0343	-0.00053766	1.1411	0.00059315	0.10676	5.5494E-05	519.8065787005125	38.779	0.30537	38.779	38.597	38.902	0					9	7	2	0	0	0	0.024495	1	3254	3254		34.173	11.13	1	109200	+		59936	24502	42068	42131	65301	65301					0.08088253945743418
PRKPVSQNI	9	Unmodified	_PRKPVSQNI_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.806365	1037.59818	-1.4682	-0.00076316	0.59491	0.00030924	-0.87325	-0.00045392	519.806563622551	38.784	0.72372	38.62	38.32	39.044	-0.16458	-0.10579	0.00078259	NaN	34.173	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1045800	+		59937	24502	42068	42131							0.08088253945743418
PRKPVSQNI	9	Unmodified	_PRKPVSQNI_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.806365	1037.59818	-0.42954	-0.00022328	-0.28354	-0.00014738	-0.71308	-0.00037066	519.8060590377944	38.858	0.74075	38.635	38.332	39.073	-0.22303	-0.090582	-0.00013066	NaN	34.173	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1046100	+		59938	24502	42068	42131							0.08088253945743418
PRKPVSQNI	9	Unmodified	_PRKPVSQNI_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.806365	1037.59818	0.029515	1.5342E-05	-0.87656	-0.00045564	-0.84704	-0.0004403	519.805657798549	38.843	0.77592	38.618	38.32	39.096	-0.2257	-0.10782	-0.00074717	NaN	34.173	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1149300	+		59939	24502	42068	42131							0.08088253945743418
PRKRGRPP	8	Unmodified	_PRKRGRPP_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;GLYR1|p.E178K|1|0.2|ENSG00000140632|chr16:4831984-4831984|C/T|missense_variant;ENSG00000171443|ENST00000301073|ZNF524	nc|ENSG00000140632|Q49A26-2|GLYR1;ENSG00000171443|ENST00000301073|ZNF524	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7874755859375	2	482.301585	962.588616	1.5047	0.00072574	-1.2067	-0.000582	0.29804	0.00014374	482.30100475945966	20.056	0.39228	20.124	19.923	20.315	0.067911					12	7	2	0	0	0	0.027866	1	469	469		13.775	0.81615	1	15358			59940	5433;8147	42069	42132	65302	65302					0.10582530450892591
PRKRQLMH	8	Unmodified	_PRKRQLMH_					0	0	0		ENST00000534350.5_1_8:146278711-146278849:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146278711-146278849:+|nuORF	ENST00000534350.5_1_8:146278711-146278849:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7916259765625	2	533.308552	1064.60255	1.5283	0.00081508	4.2206	0.0022509	5.7489	0.003066	533.3106960772232	19.932	0.47947	19.998	19.735	20.215	0.066193					20	9	3	0	0	0	0.027866	1	414	414		35.201	0	1	117670			59941	9123	42070	42133	65303	65303					0.07283439887669374
PRKSKLAVH	9	Unmodified	_PRKSKLAVH_					0	0	0		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.3246459960938	2	518.324725	1034.6349	-0.21581	-0.00011186	-0.52755	-0.00027344	-0.74336	-0.0003853	518.3244601169113	41.102	1.5936	41.102	40.728	42.322	0					125	45	5	0	0	0	0.59099	1	3657	3657		53.351	14.545	1	15158000			59942	9896	42071	42134	65304	65304					0.11896550562323682
PRKSKLAVH	9	Unmodified	_PRKSKLAVH_					0	0	0		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.32421875	2	518.324725	1034.6349	0.08768	4.5447E-05	-0.709	-0.00036749	-0.62132	-0.00032204	518.3243620525237	41.272	1.5634	41.149	40.797	42.361	-0.12317					129	44	5	0	0	0	0.6504	2	3691	3657;3691		49.442	10.601	1	14259000			59943	9896	42071	42134	65305;65306	65306					0.11896550562323682
PRKSKLAVH	9	Unmodified	_PRKSKLAVH_					0	0	0		nc|ENSG00000196586|Q9UM54-2|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.3240966796875	2	518.324725	1034.6349	-0.37454	-0.00019413	-0.2907	-0.00015068	-0.66524	-0.00034481	518.3245893120571	41.32	1.5204	41.343	40.97	42.49	0.023003					124	43	5	0	0	0	0.50848	3	3630	3630;3640;3664		58.782	10.635	1	13707000			59944	9896	42071	42134	65307;65308;65309	65307					0.11896550562323682
PRKSWGLVP	9	Unmodified	_PRKSWGLVP_					0	0	0			REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF	REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3035888671875	2	520.306001	1038.59745	-0.74318	-0.00038668	-4.1476	-0.002158	-4.8908	-0.0025447	520.3037582825109	26.262	1.0358	26.262	25.957	26.993	0					40	24	2	0	0	0	0.29104	2	1327	1327;1339		76.847	7.219	1	2818800	+		59945	30177	42072	42135	65310;65311	65310					0.07969459296714376
PRKTTHAKV	9	Unmodified	_PRKTTHAKV_					0	0	0			REV__nc|ENSG00000128656|P15882-3|CHN1	REV__nc|ENSG00000128656|P15882-3|CHN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7696533203125	2	519.314358	1036.61416	-0.75994	-0.00039465	-1.7187	-0.00089255	-2.4786	-0.0012872	519.3144607760361	35.778	1.0368	35.822	35.343	36.38	0.04406					104	27	9	0	0	0	0.024381	1	2701	2701		37.159	1.5408	1	1597400	+		59946	23005	42073	42136	65312	65312					0.09731960182648436
PRKYLFKDLD	10	Unmodified	_PRKYLFKDLD_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.7205810546875	3	432.243317	1293.70812	-0.4014	-0.0001735	0.80474	0.00034784	0.40334	0.00017434	432.24399536074355	30.615	0.74739	30.437	30.164	30.912	-0.17818					46	17	4	0	0	0	0.03519	1	1991	1991		14.086	0	1	167900			59947	8096	42074	42137	65313	65313					0.07301634494274367
PRLARSTE	8	Unmodified	_PRLARSTE_					0	0	0		ANKIB1|p.P106S|1|0.17|ENSG00000001629|chr7:92307486-92307486|C/T|missense_variant	ANKIB1|p.P106S|1|0.17|ENSG00000001629|chr7:92307486-92307486|C/T|missense_variant	ANKIB1|p.P106S|1|0.17|ENSG00000001629|chr7:92307486-92307486|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2615051269531	2	465.261791	928.509028	-0.21416	-9.9639E-05	-0.037784	-1.7579E-05	-0.25194	-0.00011722	465.2616626224276	22.602	0.74398	22.527	22.177	22.921	-0.075296					36	15	4	0	0	0	1.0106	1	795	795		35.618	0.41757	1	585940			59948	88	42075	42138	65314	65314					0.04191418986226836
PRLAYRGTP	9	Unmodified	_PRLAYRGTP_					0	0	0		ENST00000261313.2_1_12:118573931-118574051:+|nuORF	ENST00000261313.2_1_12:118573931-118574051:+|nuORF	ENST00000261313.2_1_12:118573931-118574051:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2786865234375	2	515.793258	1029.57196	-1.1124	-0.00057375	0.98144	0.00050622	-0.13092	-6.7529E-05	515.7936479419143	47.223	1.1363	47.282	46.449	47.585	0.059097					58	31	3	0	0	0	0.024457	1	4568	4568		29.15	19.444	1	1987300			59949	11468	42076	42139	65315	65315					0.05835984774262215
PRLAYRGTP	9	Unmodified	_PRLAYRGTP_					0	0	0		ENST00000261313.2_1_12:118573931-118574051:+|nuORF	ENST00000261313.2_1_12:118573931-118574051:+|nuORF	ENST00000261313.2_1_12:118573931-118574051:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.793258	1029.57196	-0.43206	-0.00022285	-6.4249	-0.0033139	-6.857	-0.0035368	516.2902418814009	47.327	1.4004	47.327	46.378	47.779	0	0.018567	-0.0069332	NaN	21.96	105	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3151700			59950	11468	42076	42139							0.05835984774262215
PRLAYRGTP	9	Unmodified	_PRLAYRGTP_					0	0	0		ENST00000261313.2_1_12:118573931-118574051:+|nuORF	ENST00000261313.2_1_12:118573931-118574051:+|nuORF	ENST00000261313.2_1_12:118573931-118574051:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.793258	1029.57196	0.24421	0.00012596	-0.60642	-0.00031279	-0.36221	-0.00018682	515.792933422693	47.47	1.2245	47.317	46.445	47.669	-0.15301	0.0084409	-0.00093091	NaN	21.96	62	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1943200			59951	11468	42076	42139							0.05835984774262215
PRLCPHPLL	9	Unmodified	_PRLCPHPLL_					0	0	0		TSFM-OS9|6|fusion;TSFM-OS9|8|fusion;TSFM-OS9|2|fusion;TSFM-OS9|4|fusion;TSFM-OS9|7|fusion;TSFM-OS9|5|fusion;TSFM-OS9|3|fusion;TSFM-OS9|1|fusion;ENST00000549307.5_1_12:58089922-58109758:+|nuORF;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-7|OS9	TSFM-OS9|6|fusion	TSFM-OS9|6|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3034057617188	2	523.302404	1044.59026	0.13302	6.9608E-05	0.78222	0.00040934	0.91523	0.00047894	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.78069	1	11027	11027		40.573	3.4135	1	10615000			59952	38111	42077	42140	65316	65316					0.06974403424624143
PRLCYHPI	8	Unmodified	_PRLCYHPI_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7739562988281	2	499.765655	997.516756	-0.14643	-7.3183E-05	3.9504	0.0019743	3.804	0.0019011	499.7667560122993	27.115	0.69369	27.115	26.741	27.435	0					21	17	2	0	0	0	0.027866	1	1442	1442		20.482	1.1219	1	123930			59953	10569	42078	42141	65317	65317					0.01789854982155248
PRLEALGPPL	10	Unmodified	_PRLEALGPPL_					0	0	0			REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8170166015625	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.98754	2	11073	11073;11122		47.657	3.5405	1	3741200	+		59954	19313	42079	42142	65318;65319	65318					0.09498308748311501
PRLEALGPPL	10	Unmodified	_PRLEALGPPL_					0	0	0			REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8168334960938	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.85955	1	11080	11080		56.721	10.749	1	3781500	+		59955	19313	42079	42142	65320	65320					0.09498308748311501
PRLEALGPPL	10	Unmodified	_PRLEALGPPL_					0	0	0			REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8176879882812	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	1.0992	1	10474	10474		32.812	3.6629	1	1297700	+		59956	19313	42079	42142	65321	65321					0.09498308748311501
PRLEALGPPL	10	Unmodified	_PRLEALGPPL_					0	0	0			REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	REV__chr1:153563944-153565506|272|30.62|0.17|7.49|-|0|None,S100A2|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.81640625	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.0393	1	10846	10846		40.778	3.6191	1	4521600	+		59957	19313	42079	42142	65322	65322					0.09498308748311501
PRLEPGASI	9	Unmodified	_PRLEPGASI_					0	0	0			REV__ENST00000502100.2_1_5:25190936-25302336:+|nuORF	REV__ENST00000502100.2_1_5:25190936-25302336:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7551574707031	2	470.266542	938.51853	0.57401	0.00026994	-0.41994	-0.00019749	0.15407	7.2453E-05	470.2661070451897	37.016	0.94044	36.953	36.548	37.488	-0.063385					42	24	3	0	0	0	0.024405	1	3044	3044		20.947	0	1	491100	+		59958	33917	42080	42143	65323	65323					0.0468118727176261
PRLFEVHPP	9	Unmodified	_PRLFEVHPP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7894897460938	2	546.303458	1090.59236	-0.48345	-0.00026411	4.3352	0.0023683	3.8517	0.0021042	546.8062875488555	31.322	1.6959	31.081	30.082	31.778	-0.24109					52	41	2	0	0	0	0.024541	1	2029	2029		24.203	13.337	1	302990	+		59959	25017	42081	42144	65324	65324					0.050691554340801304
PRLFTFAL	8	Unmodified	_PRLFTFAL_					0	0	0			REV__ENST00000307355.11_1_7:64254774-64254888:+|nuORF	REV__ENST00000307355.11_1_7:64254774-64254888:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.28692626953125	2	482.78437	963.554188	0.81481	0.00039338	1.5037	0.00072597	2.3185	0.0011193	482.7873420010062	20.431	0.58948	20.235	19.993	20.582	-0.19577					29	11	4	0	0	0	1.0574	1	541	541		26.796	0	1	284290	+		59960	30134	42082	42145	65325	65325					0.07095269519413705
PRLGAGKAL	9	Unmodified	_PRLGAGKAL_					0	0	0		ENST00000494249.5_1_9:140709863-140710166:+|nuORF	ENST00000494249.5_1_9:140709863-140710166:+|nuORF	ENST00000494249.5_1_9:140709863-140710166:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7670593261719	2	441.779619	881.544686	-0.46881	-0.00020711	0.11464	5.0644E-05	-0.35417	-0.00015647	441.77945937088595	25.695	0.68013	25.66	25.392	26.072	-0.034395					20	15	2	0	0	0	0.024386	1	1281	1281		33.516	0	1	49184			59961	15525	42083	42146	65326	65326					0.09917501233894654
PRLGGPLLL	9	Unmodified	_PRLGGPLLL_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.3043212890625	2	468.30547	934.596387	-0.75523	-0.00035368	-0.01508	-7.062E-06	-0.77031	-0.00036074	468.3054831230446	61.988	0.80659	61.988	61.529	62.335	0					76	23	5	0	0	0	0.59099	1	7231	7231		53.351	3.3269	1	45601000	+		59962	31601	42084	42147	65327	65327					0.12647244927802603
PRLGGPLLL	9	Unmodified	_PRLGGPLLL_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.3046875	2	468.30547	934.596387	-0.14446	-6.7653E-05	-0.86869	-0.00040681	-1.0132	-0.00047447	468.3050202581613	61.906	1.6994	61.968	61.542	63.242	0.062767					95	44	5	0	0	0	0.80658	1	7124	7124		38.806	3.6054	1	43419000	+		59963	31601	42084	42147	65328	65328					0.12647244927802603
PRLGKALV	8	Unmodified	_PRLGKALV_					0	0	0			REV__ENST00000502875.1_1_4:141563519-141563678:-|nuORF	REV__ENST00000502875.1_1_4:141563519-141563678:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.30291748046875	2	427.284537	852.554522	1.1318	0.00048361	1.0312	0.00044062	2.163	0.00092423	427.2849805691142	67.772	0.12418	67.517	67.455	67.579	-0.25516					4	2	2	0	0	0	0.027866	1	7802	7802		20.482	20.482	1	67527	+		59964	33941	42085	42148	65329	65329					0.12234689239278396
PRLGPASPGG	10	Unmodified	_PRLGPASPGG_					0	0	0			REV__ENSG00000146285|ENST00000369020|SCML4	REV__ENSG00000146285|ENST00000369020|SCML4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7637939453125	2	454.751059	907.487565	0.085037	3.8671E-05	0.95516	0.00043436	1.0402	0.00047303	454.7512370327985	37.466	0.37385	37.498	37.377	37.751	0.032269					11	9	2	0	0	0	0.03519	1	3014	3014		32.812	0	1	42408	+		59965	24477	42086	42149	65330	65330					0.030120339575205435
PRLGREVPAT	10	Unmodified	_PRLGREVPAT_					0	0	0			REV__ENST00000399247.6_1_6:29694878-29705996:-|nuORF	REV__ENST00000399247.6_1_6:29694878-29705996:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3170166015625	2	548.317097	1094.61964	-1.0238	-0.00056138	2.0552	0.0011269	1.0313	0.00056549	548.3181545224152	43.366	0.7603	43.227	42.885	43.645	-0.13929					56	20	4	0	0	0	0.48123	1	4055	4055		90.37	10.657	1	2528000	+		59966	31823	42087	42150	65331	65331					0.07611638974458401
PRLGSVALLL	10	Unmodified	_PRLGSVALLL_					0	0	0			REV__ENST00000588439.1_1_19:36398509-36399100:-|nuORF	REV__ENST00000588439.1_1_19:36398509-36399100:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.263671875	2	519.837134	1037.65972	-0.58478	-0.00030399	0.12942	6.7279E-05	-0.45535	-0.00023671	519.8370678220149	56.809	0.69697	56.645	56.313	57.01	-0.16431					40	19	3	0	0	0	0.03519	1	6297	6297		44.117	3.5442	1	527130	+		59967	19937	42088	42151	65332	65332					0.1423918564505584
PRLKGHAH	8	Unmodified	_PRLKGHAH_					0	0	0		ENST00000320623.9_1_16:69760742-69760850:-|nuORF	ENST00000320623.9_1_16:69760742-69760850:-|nuORF	ENST00000320623.9_1_16:69760742-69760850:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.25439453125	2	458.26721	914.519868	-0.26707	-0.00012239	-0.77184	-0.00035371	-1.0389	-0.0004761	458.26596518244645	21.518	0.43629	21.428	21.109	21.545	-0.090092					11	8	2	0	0	0	0.027866	1	621	621		42.474	15.678	1	29051			59968	12196	42089	42152	65333	65333					0.05918866151171187
PRLLLWFKRDP	11	Unmodified	_PRLLLWFKRDP_					0	0	0		nc|ENSG00000156222|O00337-2|SLC28A1	nc|ENSG00000156222|O00337-2|SLC28A1	nc|ENSG00000156222|O00337-2|SLC28A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2509765625	3	480.95399	1439.84014	-0.039438	-1.8968E-05	1.6785	0.00080727	1.639	0.0007883	480.9547948026894	19.576	0.5277	19.457	19.249	19.777	-0.11872					24	10	3	0	0	0	0.024821	1	437	437		9.6461	0.43434	1	96003			59969	18403	42090	42153	65334	65334					0.13781284301853702
PRLLLWFKRDP	11	Unmodified	_PRLLLWFKRDP_					0	0	0		nc|ENSG00000156222|O00337-2|SLC28A1	nc|ENSG00000156222|O00337-2|SLC28A1	nc|ENSG00000156222|O00337-2|SLC28A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	480.95399	1439.84014	1.2349	0.00059391	0.57686	0.00027744	1.8117	0.00087135	480.95428257785613	19.299	0.43723	19.299	19.119	19.556	0	-0.21671	-0.0002852	NaN	9.6461	26	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140340			59970	18403	42090	42153							0.13781284301853702
PRLLNDVTD	9	Unmodified	_PRLLNDVTD_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7804565429688	2	521.780013	1041.54547	0.31697	0.00016539	0.91059	0.00047513	1.2276	0.00064052	521.7803347831405	85.688	0.8843	85.688	85.372	86.257	0					60	20	4	0	0	0	0.31037	1	10743	10743		74.255	5.4682	1	2567400	+		59971	22323	42091	42154	65335	65335					0.026362510922808724
PRLLYILKEWY	11	Unmodified	_PRLLYILKEWY_					0	0	0			REV__ENSG00000162771|ENST00000294829|GARIN4	REV__ENSG00000162771|ENST00000294829|GARIN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2743835449219	3	498.622017	1492.84422	-1.1682	-0.00058248	2.959	0.0014754	1.7908	0.00089294	498.6234673970274	21.072	1.813	20.859	19.839	21.652	-0.2128					61	36	2	0	0	0	0.024789	1	510	510		26.75	1.6819	1	43164	+		59972	25490	42092	42155	65336	65336					0.11751329004960098
PRLPASET	8	Unmodified	_PRLPASET_					0	0	0		ENST00000502162.2_1_5:180259698-180261320:+|nuORF	ENST00000502162.2_1_5:180259698-180261320:+|nuORF	ENST00000502162.2_1_5:180259698-180261320:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.26934814453125	2	435.737617	869.460681	-0.1515	-6.6014E-05	-3.6743	-0.001601	-3.8258	-0.0016671	435.7348305849619	23.172	0.23652	23.248	23.114	23.351	0.076241					6	5	2	0	0	0	0.027866	1	845	845		62.978	0	1	11305			59973	15662	42093	42156	65337	65337					0.020729253463287023
PRLPEEWQ	8	Unmodified	_PRLPEEWQ_					0	0	0		sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7669677734375	2	527.769448	1053.52434	-0.59878	-0.00031602	-3.7187	-0.0019626	-4.3175	-0.0022786	527.7673524887315	29.43	0.75896	29.508	29.165	29.924	0.078344					53	18	4	0	0	0	0.56592	1	1770	1770		79.451	2.6769	1	2679300			59974	37933	42094	42157	65338	65338					-0.0002771421659417683
PRLPLCRA	8	Unmodified	_PRLPLCRA_					0	0	0			REV__nc|ENSG00000105327|Q96PG8|BBC3	REV__nc|ENSG00000105327|Q96PG8|BBC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2820129394531	2	463.273647	924.532741	-0.97494	-0.00045166	-3.4142	-0.0015817	-4.3892	-0.0020334	463.27198156299045	75.559	0.83894	75.559	75.232	76.071	0					33	22	2	0	0	0	0.027866	1	9242	9242		13.775	0	1	384680	+		59975	36539	42095	42158	65339	65339					0.06745561219042884
PRLPLSTQ	8	Unmodified	_PRLPLSTQ_					0	0	0		SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|66|3|anti-sense;SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|72|3|anti-sense	SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|66|3|anti-sense	SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|66|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.27490234375	2	456.269084	910.523616	-0.17186	-7.8415E-05	1.7164	0.00078316	1.5446	0.00070475	456.27037866982823	27.825	1.7396	27.825	27.251	28.99	0					100	43	5	0	0	0	0.96769	1	1525	1525		42.396	1.618	1	13112000			59976	37988	42096	42159	65340	65340					0.06477491134376123
PRLPPTVLP	9	Unmodified	_PRLPPTVLP_					0	0	0		ENST00000526577.5_1_11:44088110-44095068:+|nuORF;ENST00000527603.5_1_11:44088110-44094899:+|nuORF	ENST00000526577.5_1_11:44088110-44095068:+|nuORF	ENST00000526577.5_1_11:44088110-44095068:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2654113769531	2	495.310752	988.606951	0.061936	3.0678E-05	-1.5476	-0.00076656	-1.4857	-0.00073589	495.30959177440553	37.562	0.14626	37.562	37.486	37.632	0					5	3	2	0	0	0	0.024344	1	3072	3072		30.318	3.6248	1	25775			59977	16126	42097	42160	65341	65341					0.11219227582216718
PRLPSGGQ	8	Unmodified	_PRLPSGGQ_					0	0	0		nc|ENSG00000160783|Q6P1K2-2|PMF1	nc|ENSG00000160783|Q6P1K2-2|PMF1	nc|ENSG00000160783|Q6P1K2-2|PMF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2386169433594	2	406.224677	810.434801	0.7182	0.00029175	-2.873	-0.0011671	-2.1548	-0.00087532	406.22539486424563	27.285	0.21819	27.367	27.245	27.463	0.081293					7	5	2	0	0	0	0.027866	1	1423	1423		38.806	6.8513	1	29001			59978	18427	42098	42161	65342	65342					0.022000758947115173
PRLQLVFQLL	10	Unmodified	_PRLQLVFQLL_					0	0	0		ENST00000507175.5_1_5:145838810-145843302:+|nuORF	ENST00000507175.5_1_5:145838810-145843302:+|nuORF	ENST00000507175.5_1_5:145838810-145843302:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	408.9223937988281	3	409.592169	1225.75468	0.64709	0.00026504	-3.5405	-0.0014502	-2.8934	-0.0011851	409.5908063950883	103.36	0.47564	103.36	103.08	103.56	0					16	10	2	0	0	0	0.03519	1	13252	13252		16.007	4.91	1	120990			59979	15754	42099	42162	65343	65343					0.15083119116229682
PRLQRPPG	8	Unmodified	_PRLQRPPG_					0	0	0		ENST00000367385.8_1_1:198126217-198201715:+|nuORF;ENST00000442588.5_1_1:198126217-198201687:+|nuORF	ENST00000367385.8_1_1:198126217-198201715:+|nuORF	ENST00000367385.8_1_1:198126217-198201715:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	461.26116943359375	2	460.774868	919.535184	-0.90113	-0.00041522	0.69345	0.00031952	-0.20768	-9.5695E-05	460.7752336199972	29.379	0.38971	29.134	28.967	29.357	-0.24524					13	8	2	0	0	0	0.027866	1	1796	1796		13.775	0	1	73386			59980	12856	42100	42163	65344	65344					0.07219732948362889
PRLQVTGYADV	11	Unmodified	_PRLQVTGYADV_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.875732421875	3	406.887422	1217.64044	1.6508	0.00067168	3.7164	0.0015121	5.3671	0.0021838	406.88838121389847	20.012	0.14806	19.812	19.701	19.85	-0.2001					4	2	2	0	0	0	0.024757	1	483	483		17.167	0.63689	1	7341.9	+		59981	19162	42101	42164	65345	65345					0.04032184563448027
PRLRLPPW	8	Unmodified	_PRLRLPPW_					0	0	0			REV__ENST00000530267.5_2_11:77899860-77900121:+|nuORF	REV__ENST00000530267.5_2_11:77899860-77900121:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3053588867188	2	517.816536	1033.61852	-0.25915	-0.00013419	4.0034	0.002073	3.7442	0.0019388	517.8186791874411	60.248	0.11008	60	59.909	60.019	-0.24842					4	2	2	0	0	0	0.027866	1	6677	6677		13.775	13.775	1	290520	+		59982	34533	42102	42165	65346	65346					0.10305469396212175
PRLRLVKPQAP	11	Unmodified	_PRLRLVKPQAP_					0	0	0			REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.26409912109375	3	425.606701	1273.79827	-0.1117	-4.754E-05	0.65322	0.00027801	0.54152	0.00023047	425.6068784941325	23.393	0.46147	23.47	23.272	23.734	0.076241					14	10	2	0	0	0	0.024809	1	906	906		28.577	0	1	40986	+		59983	31977	42103	42166	65347	65347					0.1723272861336227
PRLRLVKPQAP	11	Unmodified	_PRLRLVKPQAP_					0	0	0			REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	425.606701	1273.79827	-0.75602	-0.00032177	1.4075	0.00059904	0.65147	0.00027727	425.60726323821484	23.464	0.52876	23.464	23.165	23.694	0	0.076819	0.0011436	NaN	28.577	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59422	+		59984	31977	42103	42166							0.1723272861336227
PRLRLVKPQAP	11	Unmodified	_PRLRLVKPQAP_					0	0	0			REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	425.606701	1273.79827	-0.67016	-0.00028522	1.3123	0.00055853	0.64215	0.0002733	425.607314182667	23.414	0.44882	23.353	23.152	23.6	-0.060862	-0.033639	0.0010221	NaN	28.577	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45933	+		59985	31977	42103	42166							0.1723272861336227
PRLRLVKPQAP	11	Unmodified	_PRLRLVKPQAP_					0	0	0			REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	425.606701	1273.79827	0.48568	0.00020671	-0.047034	-2.0018E-05	0.43865	0.00018669	425.94117415806744	23.581	0.50509	23.379	23.107	23.612	-0.20193	-0.0077096	-0.00071351	NaN	28.577	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53820	+		59986	31977	42103	42166							0.1723272861336227
PRLRLVKPQAP	11	Unmodified	_PRLRLVKPQAP_					0	0	0			REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	425.606701	1273.79827	-0.090939	-3.8704E-05	0.13364	5.6879E-05	0.042703	1.8175E-05	425.94116665216785	23.48	0.4982	23.3	23.021	23.519	-0.17989	-0.086962	-0.00048282	NaN	28.577	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67738	+		59987	31977	42103	42166							0.1723272861336227
PRLRLVKPQAP	11	Unmodified	_PRLRLVKPQAP_					0	0	0			REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	REV__ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	425.606701	1273.79827	2.109	0.00089758	-2.1079	-0.00089713	0.0010617	4.5187E-07	425.60584554895195	23.547	0.40495	23.356	23.167	23.572	-0.19117	-0.031046	-0.0033449	NaN	28.577	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66629	+		59988	31977	42103	42166							0.1723272861336227
PRLSDPCAL	9	Unmodified	_PRLSDPCAL_					0	0	0			REV__ENST00000362058.2_2_1:16957286-16958865:-|nuORF	REV__ENST00000362058.2_2_1:16957286-16958865:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7748718261719	2	486.252577	970.490601	-0.83434	-0.0004057	-2.1178	-0.0010298	-2.9521	-0.0014355	486.2513579155424	23.345	0.49114	23.421	23.156	23.647	0.076241					21	11	3	0	0	0	0.024323	1	852	852		27.882	6.9353	1	113850	+		59989	30965	42104	42167	65348	65348					0.004175410199991347
PRLSDPCAL	9	Unmodified	_PRLSDPCAL_					0	0	0			REV__ENST00000362058.2_2_1:16957286-16958865:-|nuORF	REV__ENST00000362058.2_2_1:16957286-16958865:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.252577	970.490601	-0.55403	-0.0002694	-1.38	-0.00067104	-1.9341	-0.00094044	486.25184110318656	23.501	1.2771	23.501	22.803	24.08	0	0.12547	-0.00047168	NaN	27.882	39	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154660	+		59990	30965	42104	42167							0.004175410199991347
PRLSDPCAL	9	Unmodified	_PRLSDPCAL_					0	0	0			REV__ENST00000362058.2_2_1:16957286-16958865:-|nuORF	REV__ENST00000362058.2_2_1:16957286-16958865:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.252577	970.490601	0.16186	7.8704E-05	-0.09169	-4.4584E-05	0.070169	3.412E-05	486.2524255806215	23.501	1.3578	23.299	22.873	24.231	-0.20193	-0.076118	0.00078123	NaN	27.882	56	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154910	+		59991	30965	42104	42167							0.004175410199991347
PRLSGGRDL	9	Unmodified	_PRLSGGRDL_					0	0	0		ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.77484130859375	2	485.775065	969.535577	-0.63965	-0.00031073	0.36103	0.00017538	-0.27863	-0.00013535	485.7751065956583	23.337	1.0186	23.276	22.709	23.727	-0.060862					49	23	3	0	0	0	0.31037	1	905	905		74.255	5.4682	1	745660			59992	15291	42105	42168	65349	65349					0.04959107877573388
PRLSGGRDL	9	Unmodified	_PRLSGGRDL_					0	0	0		ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.775065	969.535577	-0.57138	-0.00027756	0.25932	0.00012597	-0.31206	-0.00015159	485.7750486619903	23.368	0.93137	23.368	22.848	23.78	0	0.086996	0.00046059	NaN	74.255	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762220			59993	15291	42105	42168							0.04959107877573388
PRLSGGRDL	9	Unmodified	_PRLSGGRDL_					0	0	0		ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	485.775065	969.535577	-0.85881	-0.00041719	0.53888	0.00026178	-0.31993	-0.00015541	485.7751613421491	23.218	0.84753	23.294	22.886	23.734	0.076241	0.013514	0.0007322	NaN	74.255	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810750			59994	15291	42105	42168							0.04959107877573388
PRLSGGRDL	9	Unmodified	_PRLSGGRDL_					0	0	0		ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.775065	969.535577	0.2277	0.00011061	-0.39755	-0.00019312	-0.16985	-8.2509E-05	485.7747013499917	23.501	1.099	23.299	22.78	23.879	-0.20193	0.01862	-0.00017759	NaN	74.255	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172600			59995	15291	42105	42168							0.04959107877573388
PRLSGGRDL	9	Unmodified	_PRLSGGRDL_					0	0	0		ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.775065	969.535577	-0.30775	-0.0001495	0.24731	0.00012014	-0.060444	-2.9362E-05	485.77509186229884	23.334	0.85483	23.154	22.883	23.738	-0.17989	-0.12673	0.00044892	NaN	74.255	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159990			59996	15291	42105	42168							0.04959107877573388
PRLSGGRDL	9	Unmodified	_PRLSGGRDL_					0	0	0		ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	ENST00000483778.5_1_2:242598711-242598873:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.775065	969.535577	1.9561	0.00095021	-2.3147	-0.0011244	-0.35863	-0.00017422	485.7738244544367	23.485	0.80973	23.293	22.851	23.66	-0.19117	0.012623	-0.0020402	NaN	74.255	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198630			59997	15291	42105	42168							0.04959107877573388
PRLSLALGKC	10	Unmodified	_PRLSLALGKC_					0	0	0			REV__ENST00000488149.5_1_3:183027559-183118319:-|nuORF	REV__ENST00000488149.5_1_3:183027559-183118319:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3094482421875	2	529.312969	1056.61138	-1.8693	-0.00098946	-3.8488	-0.0020372	-5.7181	-0.0030267	529.3109158842053	29.274	0.82237	29.274	29.032	29.855	0					52	20	4	0	0	0	1.0508	1	1791	1791		39.253	8.7492	1	3003400	+		59998	33633	42106	42169	65350	65350					0.08534368733489828
PRLSQTWYG	9	Unmodified	_PRLSQTWYG_					0	0	0		ENST00000263856.8_1_2:86732285-86732549:-|nuORF	ENST00000263856.8_1_2:86732285-86732549:-|nuORF	ENST00000263856.8_1_2:86732285-86732549:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.7485961914062	2	554.282723	1106.55089	-0.54013	-0.00029939	-3.4276	-0.0018999	-3.9677	-0.0021992	554.280216353989	36.281	0.39645	36.075	35.886	36.282	-0.20518					14	10	2	0	0	0	0.024511	1	2834	2834		32.812	0	1	60255			59999	11543	42107	42170	65351	65351					0.001879746747590616
PRLSWSHCR	9	Unmodified	_PRLSWSHCR_					0	0	0			REV__ENST00000607746.1_1_3:107854138-107855185:+|nuORF	REV__ENST00000607746.1_1_3:107854138-107855185:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2260131835938	2	571.287817	1140.56108	0.24587	0.00014046	-4.0003	-0.0022853	-3.7544	-0.0021448	571.285583406974	50.545	0.55319	50.433	50.196	50.749	-0.11163					24	14	2	0	0	0	0.024344	1	5174	5174		45.972	11.8	1	499860	+		60000	35958	42108	42171	65352	65352					-0.0035774087166373647
PRLTIAPI	8	Unmodified	_PRLTIAPI_					0	0	0		chr12:52516857-52517119|271|30.42|0.45|6.08|-|1|KRT5,None|3	chr12:52516857-52517119|271|30.42|0.45|6.08|-|1|KRT5,None|3	chr12:52516857-52517119|271|30.42|0.45|6.08|-|1|KRT5,None|3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.76123046875	2	440.78437	879.554188	-0.19745	-8.7033E-05	0.52811	0.00023278	0.33066	0.00014575	440.7843893800836	38.952	0.45666	38.952	38.797	39.254	0					19	12	2	0	0	0	0.027866	1	3292	3292		40.573	5.3719	1	302740			60001	319	42109	42172	65353	65353					0.10959269519412373
PRLTMHYP	8	Unmodified	_PRLTMHYP_					0	0	0		ENSG00000159387|ENST00000290552|IRX6	ENSG00000159387|ENST00000290552|IRX6	ENSG00000159387|ENST00000290552|IRX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7665100097656	2	507.763112	1013.51167	4.4007	0.0022345	2.7852	0.0014142	7.1859	0.0036487	507.7643447112786	17.505	0.59251	17.254	17.076	17.669	-0.25049					26	11	4	0	0	0	1.0133	1	178	178		35.201	0.04869	1	248650			60002	6743	42110	42173	65354	65354					0.005455511195350482
PRLTRCLR	8	Unmodified	_PRLTRCLR_					0	0	0		chr1:156745373-156749864|230|13.65|0.54|4.65|-|1|HDGF,None|1	chr1:156745373-156749864|230|13.65|0.54|4.65|-|1|HDGF,None|1	chr1:156745373-156749864|230|13.65|0.54|4.65|-|1|HDGF,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.76409912109375	2	507.803103	1013.59165	-0.37058	-0.00018818	-3.1455	-0.0015973	-3.5161	-0.0017855	507.8010546751827	31.581	0.80136	31.65	31.166	31.967	0.068962					35	19	2	0	0	0	0.027866	1	2040	2040		40.573	8.6178	1	304150			60003	275	42111	42174	65355	65355					0.08540037513387233
PRLTRKQD	8	Unmodified	_PRLTRKQD_					0	0	0			REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2958679199219	2	507.296165	1012.57778	-0.53651	-0.00027217	0.23345	0.00011843	-0.30306	-0.00015374	507.29613269466364	27.691	0.9688	27.678	27.352	28.321	-0.012983					47	24	3	0	0	0	0.87148	1	1523	1523		53.351	9.2347	1	1048000	+		60004	37745	42112	42175	65356	65356					0.07199083285945562
PRLVKVLILRQ	11	Unmodified	_PRLVKVLILRQ_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.7267150878906	3	445.638001	1333.89217	-0.54838	-0.00024438	-3.7238	-0.0016594	-4.2721	-0.0019038	445.63621864370356	39.086	1.1722	38.863	38.721	39.893	-0.22311					117	30	5	0	0	0	0.024886	1	3275	3275		6.3209	4.9021	1	3399800	+		60005	27801	42113	42176	65357	65357					0.2385844771565644
PRLWLASA	8	Unmodified	_PRLWLASA_					0	0	0			REV__ENST00000580473.5_1_18:74799306-74799519:-|nuORF	REV__ENST00000580473.5_1_18:74799306-74799519:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2825012207031	2	457.266345	912.518136	-0.073087	-3.342E-05	-4.2152	-0.0019275	-4.2883	-0.0019609	457.26446988595086	34.688	0.46572	34.688	34.515	34.981	0					14	11	2	0	0	0	0.027866	1	2611	2611		50.025	37.818	1	117710	+		60006	35517	42114	42177	65358	65358					0.05837812342565485
PRLWLASA	8	Unmodified	_PRLWLASA_					0	0	0			REV__ENST00000580473.5_1_18:74799306-74799519:-|nuORF	REV__ENST00000580473.5_1_18:74799306-74799519:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2825622558594	2	457.266345	912.518136	-0.49441	-0.00022608	-3.7035	-0.0016935	-4.1979	-0.0019196	457.2646521586001	34.497	0.39594	34.547	34.404	34.8	0.050255					13	9	2	0	0	0	0.027866	1	2542	2542		18.324	0	1	94258	+		60007	35517	42114	42177	65359	65359					0.05837812342565485
PRLWLASA	8	Unmodified	_PRLWLASA_					0	0	0			REV__ENST00000580473.5_1_18:74799306-74799519:-|nuORF	REV__ENST00000580473.5_1_18:74799306-74799519:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.266345	912.518136	-0.2786	-0.00012739	-5.803	-0.0026535	-6.0815	-0.0027809	457.2631580616664	34.536	0.2445	34.329	34.201	34.446	-0.20696	-0.19232	-0.0012349	NaN	50.025	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17533	+		60008	35517	42114	42177							0.05837812342565485
PRLWSWMKL	9	Unmodified	_PRLWSWMKL_					0	0	0		nc|ENSG00000183146|Q9H606|PRORY	nc|ENSG00000183146|Q9H606|PRORY	nc|ENSG00000183146|Q9H606|PRORY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.23919677734375	3	406.226833	1215.65867	0.13247	5.3815E-05	0.048011	1.9503E-05	0.18049	7.3318E-05	406.22659735051445	27.283	0.29459	27.27	27.17	27.464	-0.012983					11	7	2	0	0	0	0.024447	1	1472	1472		32.812	15.344	1	84793			60009	18577	42115	42178	65360	65360					0.059466480044875425
PRMAMAPL	8	Unmodified	_PRMAMAPL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.77215576171875	2	443.735509	885.456464	-0.013929	-6.1809E-06	0.040709	1.8064E-05	0.02678	1.1883E-05	443.7351311404903	52.094	0.47934	52.094	51.871	52.351	0					22	12	3	0	0	0	0.027866	1	5579	5579		37.028	11.578	1	182650	+		60010	24983	42116	42179	65361	65361					0.009154213274200629
PRMAMAPL	8	Unmodified	_PRMAMAPL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.735509	885.456464	0.15698	6.9658E-05	-0.74675	-0.00033136	-0.58977	-0.0002617	443.73507321521265	52.186	0.44085	52.038	51.846	52.287	-0.14735	-0.020154	-0.00032445	NaN	54.765	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246840	+		60011	24983	42116	42179							0.009154213274200629
PRMAMAPL	8	Unmodified	_PRMAMAPL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.735509	885.456464	-0.66303	-0.00029421	-0.098209	-4.3579E-05	-0.76123	-0.00033779	443.7353670972507	51.951	0.41709	52.043	51.823	52.24	0.091938	-0.015683	0.00025111	NaN	54.765	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160580	+		60012	24983	42116	42179							0.009154213274200629
PRMKFIYT	8	Unmodified	_PRMKFIYT_					0	0	0			REV__ENSG00000165621|ENST00000541038|OXGR1	REV__ENSG00000165621|ENST00000541038|OXGR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.8223266601562	2	528.288963	1054.56337	-0.80549	-0.00042553	-3.9935	-0.0021097	-4.799	-0.0025353	528.2868492523922	32.396	2.367	32.407	32.063	34.43	0.011795					88	62	2	0	0	0	0.027866	1	2272	2272		33.516	20.556	1	1079700	+		60013	25907	42117	42180	65362	65362					0.038272948134363105
PRMLGVIL	8	Unmodified	_PRMLGVIL_					0	0	0			REV__nc|ENSG00000197043|P08133-2|ANXA6	REV__nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.779052734375	2	449.780773	897.546994	0.49227	0.00022142	-4.2916	-0.0019303	-3.7994	-0.0017089	449.7787585312412	67.773	1.6521	67.773	67.285	68.938	0					102	42	4	0	0	0	0.37803	1	8105	8105		100.27	4.225	1	7631000	+		60014	28254	42118	42181	65363	65363					0.09412213647351564
PRMQRGGL	8	Oxidation (M)	_PRM(Oxidation (M))QRGGL_		PRM(1)QRGGL		PRM(63)QRGGL	0	0	1		ENST00000557457.1_2_14:105406809-105420235:-|nuORF	ENST00000557457.1_2_14:105406809-105420235:-|nuORF	ENST00000557457.1_2_14:105406809-105420235:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7500305175781	2	465.750536	929.486519	-0.43853	-0.00020425	-0.20584	-9.5868E-05	-0.64437	-0.00030012	465.75073531590664	29.58	1.695	29.583	28.713	30.408	0.0031357					95	41	5	0	0	0	0.75307	1	1813	1813		62.978	12.954	1	15425000			60015	16733	42119	42182	65364	65364		541			0.01895496316990375
PRMRDGAIY	9	Unmodified	_PRMRDGAIY_					0	0	0			REV__ENST00000377648.4_1_1:6681853-6681985:+|nuORF	REV__ENST00000377648.4_1_1:6681853-6681985:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	539.77392578125	2	539.776751	1077.53895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.094	1	76.932	76.432	77.432	-0.16196								0	0	0	0.29326	1	9158	9158		68.787	2.3575	1		+		60016	31380	42120	42183	65365	65365					0.003280346599240147
PRNDVLKSTGK	11	Unmodified	_PRNDVLKSTGK_					0	0	0			REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	REV__TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.7451171875	3	405.566571	1213.67788	0.90175	0.00036572	3.1442	0.0012752	4.046	0.0016409	405.5676845750789	45.612	0.50944	45.612	45.375	45.885	0					34	14	3	0	0	0	0.024779	1	4423	4423		27.644	13.507	1	1003400	+		60017	20552	42121	42184	65366	65366					0.0795927582908007
PRNHGVPF	8	Unmodified	_PRNHGVPF_					0	0	0		ENST00000551620.5_1_12:69979279-69980075:+|nuORF	ENST00000551620.5_1_12:69979279-69980075:+|nuORF	ENST00000551620.5_1_12:69979279-69980075:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.2317810058594	2	462.245944	922.477334	-0.94003	-0.00043452	2.0683	0.00095606	1.1283	0.00052153	462.24657185589575	35.244	0.38683	35.222	35.122	35.509	-0.021767					14	9	2	0	0	0	0.027866	1	2727	2727		49.211	18.707	1	143830			60018	16604	42122	42185	65367	65367					0.012994710229463635
PRNLQPQRAAL	11	Unmodified	_PRNLQPQRAAL_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	421.91656494140625	3	421.914194	1262.72075	2.812	0.0011864	3.1791	0.0013413	5.9911	0.0025277	421.915427910184	19.396	0.87496	19.462	19.143	20.018	0.066195					45	17	4	0	0	0	1.0371	1	360	360		28.577	5.054	1	315030			60019	18258	42123	42186	65368	65368					0.09990090677183616
PRNLTGVPLS	10	Unmodified	_PRNLTGVPLS_					0	0	0			REV__nc|ENSG00000065361|P21860-4|ERBB3	REV__nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.3059692382812	2	527.306198	1052.59784	0.57506	0.00030323	-3.3221	-0.0017518	-2.7471	-0.0014485	527.3045102353642	98.07	1.4368	97.933	97.377	98.814	-0.13625					64	33	3	0	0	0	1.1286	1	12128	12128		25.574	2.0514	1	643280	+		60020	20309	42124	42187	65369	65369					0.07364834225904815
PRNLVGELVV	10	Unmodified	_PRNLVGELVV_					0	0	0		ENST00000573957.1_1_17:7497970-7499300:-|nuORF	ENST00000573957.1_1_17:7497970-7499300:-|nuORF	ENST00000573957.1_1_17:7497970-7499300:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2953491210938	2	548.329673	1094.64479	0.049374	2.7073E-05	-4.1663	-0.0022845	-4.1169	-0.0022574	548.3273042210768	19.578	0.13762	19.578	19.463	19.6	0					4	2	2	0	0	0	0.03519	1	420	420		27.882	4.3595	1	39241			60021	17077	42125	42188	65370	65370					0.10125693777035849
PRNMSEMRAK	10	Unmodified	_PRNMSEMRAK_					0	0	0			REV__ENSG00000173166|ENST00000319170|RAPH1	REV__ENSG00000173166|ENST00000319170|RAPH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.5791931152344	3	407.205992	1218.59615	0.60378	0.00024586	-2.7163	-0.0011061	-2.1125	-0.00086022	407.2043611181847	34.688	0.46214	34.688	34.444	34.906	0					13	11	2	0	0	0	0.03519	1	2595	2595		41.427	16.301	1	36629	+		60022	26747	42126	42189	65371	65371					-0.004408661260185909
PRNNEVEYN	9	Unmodified	_PRNNEVEYN_					0	0	0		ENST00000395386.6_1_8:133858387-133858432:+|nuORF	ENST00000395386.6_1_8:133858387-133858432:+|nuORF	ENST00000395386.6_1_8:133858387-133858432:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.7635498046875	2	567.762352	1133.51015	-0.61564	-0.00034954	3.4483	0.0019578	2.8327	0.0016083	567.7641842212655	20.879	0.66987	20.774	20.424	21.094	-0.10477					40	13	4	0	0	0	0.75397	1	572	572		42.396	5.9494	1	543240			60023	13516	42127	42190	65372	65372					-0.05126411435526279
PRNNEVEYN	9	Unmodified	_PRNNEVEYN_					0	0	0		ENST00000395386.6_1_8:133858387-133858432:+|nuORF	ENST00000395386.6_1_8:133858387-133858432:+|nuORF	ENST00000395386.6_1_8:133858387-133858432:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	567.762352	1133.51015	-1.6591	-0.00094199	4.3798	0.0024867	2.7206	0.0015447	567.7646856215697	20.679	0.72632	20.679	20.42	21.146	0	-0.047535	0.00046103	NaN	42.396	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352450			60024	13516	42127	42190							-0.05126411435526279
PRNPPSAPD	9	Unmodified	_PRNPPSAPD_					0	0	0		ENST00000470037.1_1_1:26358781-26358883:+|nuORF	ENST00000470037.1_1_1:26358781-26358883:+|nuORF	ENST00000470037.1_1_1:26358781-26358883:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7722473144531	2	475.738148	949.461744	-0.32551	-0.00015486	2.9579	0.0014072	2.6323	0.0012523	475.73974546825315	23.094	0.42522	23.17	22.886	23.312	0.076241					13	9	2	0	0	0	0.024477	1	808	808		20.947	0	1	38694			60025	14923	42128	42191	65373	65373					-0.01500860284772898
PRNPRTDKL	9	Unmodified	_PRNPRTDKL_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.29541015625	2	548.814722	1095.61489	-1.2611	-0.00069211	0.11062	6.0708E-05	-1.1505	-0.0006314	548.8147660826783	20.31	0.62597	20.31	20.078	20.704	0					15	12	2	0	0	0	0.024484	1	493	493		30.318	6.115	1	22257			60026	2674	42129	42192	65374	65374					0.07090754831688173
PRNPRTDKL	9	Unmodified	_PRNPRTDKL_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.814722	1095.61489	-0.97072	-0.00053274	0.22127	0.00012143	-0.74945	-0.00041131	548.814893928957	20.58	0.47495	20.475	20.277	20.752	-0.10477	0.082695	8.3576E-05	NaN	30.318	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23893			60027	2674	42129	42192							0.07090754831688173
PRNQPNTALLS	11	Unmodified	_PRNQPNTALLS_					0	0	0		ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3	ENSG00000114923|ENST00000358055|SLC4A3	ENSG00000114923|ENST00000358055|SLC4A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.2229919433594	3	404.222805	1209.64658	0.94841	0.00038337	-0.5936	-0.00023995	0.35482	0.00014343	404.22248125372397	17.768	1.4128	17.626	16.977	18.39	-0.14278					61	29	4	0	0	0	1.0119	1	187	187		23.378	0	1	510600			60028	3395	42130	42193	65375	65375					0.0501470279498335
PRNRIWHLRSP	11	Unmodified	_PRNRIWHLRSP_					0	0	0			REV__ENST00000606385.1_1_6:25016058-25042154:-|nuORF	REV__ENST00000606385.1_1_6:25016058-25042154:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7768859863281	3	477.940855	1430.80073	-0.13544	-6.4732E-05	-2.494	-0.001192	-2.6294	-0.0012567	477.94025711040047	27.87	1.0841	27.866	27.581	28.665	-0.0042					71	26	4	0	0	0	0.024748	1	1553	1553		30.569	22.162	1	909120	+		60029	35932	42131	42194	65376	65376					0.10256577071027095
PRNSPRRR	8	Unmodified	_PRNSPRRR_					0	0	0		ENST00000228741.7_1_12:96588285-96617411:+|nuORF	ENST00000228741.7_1_12:96588285-96617411:+|nuORF	ENST00000228741.7_1_12:96588285-96617411:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8189697265625	2	519.805023	1037.59549	-1.3675	-0.00071085	2.4074	0.0012514	1.0399	0.00054054	519.8061712712366	38.952	0.36371	38.976	38.807	39.17	0.023727					11	9	2	0	0	0	0.027866	1	3246	3246		33.516	19.74	1	82700			60030	11222	42132	42195	65377	65377					0.07819843331458287
PRNSRHEGSF	10	Unmodified	_PRNSRHEGSF_					0	0	0		ENSG00000105085|ENST00000263390|MED26	ENSG00000105085|ENST00000263390|MED26	ENSG00000105085|ENST00000263390|MED26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	593.8088989257812	2	593.789235	1185.56392	-1.1882	-0.00070554	3.4269	0.0020348	2.2387	0.0013293	593.791160364222	21.631	0.23087	21.541	21.452	21.683	-0.090092					5	4	2	0	0	0	0.03519	1	673	673		60.118	17.722	1	10764			60031	2633	42133	42196	65378	65378					-0.0214419421315597
PRNVLSEYQ	9	Unmodified	_PRNVLSEYQ_					0	0	0		ENSG00000183696|ENST00000395564|UPP1;ENST00000495446.1_1_7:48146453-48147951:+|nuORF;ENST00000395560.7_1_7:48134363-48147951:+|nuORF	ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.2967529296875	2	553.285463	1104.55637	3.9432	0.0021817	-1.7138	-0.0009482	2.2295	0.0012335	553.284492403708	18.413	0.42689	18.476	18.222	18.649	0.063307					13	8	2	0	0	0	0.99229	1	252	252		21.96	0.25755	1	26484			60032	9263	42134	42197	65379	65379					0.008276534665810686
PRNVLSEYQ	9	Unmodified	_PRNVLSEYQ_					0	0	0		ENSG00000183696|ENST00000395564|UPP1;ENST00000495446.1_1_7:48146453-48147951:+|nuORF;ENST00000395560.7_1_7:48134363-48147951:+|nuORF	ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.285463	1104.55637	2.8674	0.0015865	-0.098469	-5.4482E-05	2.7689	0.001532	553.285150670124	18.215	0.78173	18.215	17.844	18.626	0	-0.095072	3.834E-05	NaN	21.96	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34954			60033	9263	42134	42197							0.008276534665810686
PRNVLSEYQ	9	Unmodified	_PRNVLSEYQ_					0	0	0		ENSG00000183696|ENST00000395564|UPP1;ENST00000495446.1_1_7:48146453-48147951:+|nuORF;ENST00000395560.7_1_7:48134363-48147951:+|nuORF	ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.285463	1104.55637	-0.11879	-6.5724E-05	2.2996	0.0012724	2.1808	0.0012066	553.2862842553716	18.371	0.64024	18.24	17.957	18.597	-0.13147	-0.070613	0.002692	NaN	21.96	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21221			60034	9263	42134	42197							0.008276534665810686
PRNVNNLTV	9	Unmodified	_PRNVNNLTV_					0	0	0		ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.78759765625	2	513.788173	1025.56179	-0.70019	-0.00035975	0.50669	0.00026033	-0.1935	-9.9416E-05	513.7882737281132	24.102	0.83095	24.102	23.822	24.653	0					42	18	3	0	0	0	0.43973	1	1021	1021		63.306	4.5243	1	2006600			60035	16766	42135	42198	65380	65380					0.05003377049024493
PRNVNNLTV	9	Unmodified	_PRNVNNLTV_					0	0	0		ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7883911132812	2	513.788173	1025.56179	-1.0023	-0.00051499	0.67057	0.00034453	-0.33177	-0.00017046	513.7883890608659	24.114	0.88525	24.066	23.783	24.669	-0.047148					40	19	3	0	0	0	0.50848	1	1000	1000		58.782	9.3404	1	1774600			60036	16766	42135	42198	65381	65381					0.05003377049024493
PRNVNNLTV	9	Unmodified	_PRNVNNLTV_					0	0	0		ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.788173	1025.56179	-0.057032	-2.9302E-05	-4.7046	-0.0024172	-4.7616	-0.0024465	513.7856383798306	24.233	0.26667	24.018	23.822	24.089	-0.2151	-0.01403	-0.004906	NaN	63.306	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128330			60037	16766	42135	42198							0.05003377049024493
PRNVNNLTV	9	Unmodified	_PRNVNNLTV_					0	0	0		ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	ENST00000559000.5_1_15:56945523-56946605:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.788173	1025.56179	1.9335	0.00099341	-7.0841	-0.0036397	-5.1506	-0.0026463	513.7845131600974	24.096	0.17885	23.915	23.759	23.938	-0.18089	-0.11694	-0.0073512	NaN	63.306	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145300			60038	16766	42135	42198							0.05003377049024493
PRPAAPTTRT	10	Unmodified	_PRPAAPTTRT_					0	0	0		ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.288330078125	2	534.301447	1066.58834	2.105	0.0011247	-3.1394	-0.0016774	-1.0344	-0.00055271	534.2992558332058	18.323	0.44015	18.323	18.186	18.626	0					14	8	3	0	0	0	0.03519	1	264	264		34.173	14.176	1	27491			60039	11880	42136	42199	65382	65382					0.05771065940348308
PRPAEHLE	8	Unmodified	_PRPAEHLE_					0	0	0		ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.236083984375	2	474.748516	947.482479	0.13337	6.3318E-05	4.3219	0.0020518	4.4553	0.0021151	474.7505231983301	28.968	0.58746	29.048	28.742	29.329	0.080811					24	14	2	0	0	0	0.027866	1	1727	1727		57.811	19.005	1	246420			60040	8360	42137	42200	65383	65383					0.0066373009490234836
PRPALPPGM	9	Unmodified	_PRPALPPGM_					0	0	0			REV__nc|ENSG00000197162|A8K8V0-2|ZNF785	REV__nc|ENSG00000197162|A8K8V0-2|ZNF785	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2601623535156	2	468.260205	934.505857	0.69365	0.00032481	-0.60763	-0.00028453	0.08602	4.028E-05	468.2599703843451	24.031	2.7749	24.109	23.353	26.127	0.078047					156	63	5	0	0	0	0.75282	1	986	986		42.474	0	1	728920	+		60041	28274	42138	42201	65384	65384					0.0359845260786642
PRPAPGPAPF	10	Unmodified	_PRPAPGPAPF_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7797546386719	2	503.777077	1005.5396	-0.46554	-0.00023453	3.4499	0.001738	2.9843	0.0015034	503.7786416227463	23.056	2.3766	23.056	21.146	23.523	0					94	51	3	0	0	0	1.0408	1	819	819		40.573	1.7665	1	711780			60042	2678	42139	42202	65385	65385					0.03705197371277791
PRPAPGPAPF	10	Unmodified	_PRPAPGPAPF_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7787170410156	2	503.777077	1005.5396	-0.54807	-0.00027611	3.463	0.0017446	2.9149	0.0014685	503.7786342981133	24.082	2.4579	24.082	23.321	25.779	0					127	57	3	0	0	0	0.91051	1	997	997		53.351	5.4358	1	878790			60043	2678	42139	42202	65386	65386					0.03705197371277791
PRPARRDVL	9	Unmodified	_PRPARRDVL_					0	0	0		ENST00000410066.5_1_2:180635370-180726053:-|nuORF	ENST00000410066.5_1_2:180635370-180726053:-|nuORF	ENST00000410066.5_1_2:180635370-180726053:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.3273315429688	2	540.325257	1078.63596	-0.52598	-0.0002842	3.3236	0.0017958	2.7976	0.0015116	540.327058419719	48.926	1.186	48.926	48.619	49.805	0					71	32	4	0	0	0	0.77768	1	5030	5030		40.778	3.6191	1	5569200			60044	13801	42140	42203	65387	65387					0.0997876493122476
PRPASGPIRP	10	Unmodified	_PRPASGPIRP_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000563749.1_1_16:89627605-89627911:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.306396484375	2	524.306532	1046.59851	-0.69374	-0.00036373	-0.47612	-0.00024963	-1.1699	-0.00061337	524.3061416535213	30.477	1.2862	30.551	29.759	31.045	0.074314					76	30	4	0	0	0	0.65479	1	1915	1915		70.816	4.3869	1	1570300			60045	7696	42141	42204	65388	65388					0.07707673665595394
PRPDCAPQ	8	Unmodified	_PRPDCAPQ_					0	0	0			REV__ENSG00000160161|ENST00000291495|CILP2	REV__ENSG00000160161|ENST00000291495|CILP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2593688964844	2	442.20817	882.401786	-0.2064	-9.1272E-05	-2.0622	-0.0009119	-2.2686	-0.0010032	442.2061738235534	27.364	0.36645	27.351	27.241	27.608	-0.012983					14	9	2	0	0	0	0.027866	1	1490	1490		47.916	0	1	62008	+		60046	25291	42142	42205	65389	65389					-0.044118742196587846
PRPDPPLYHP	10	Unmodified	_PRPDPPLYHP_					0	0	0			REV__ENSG00000092067|ENST00000206513|CEBPE	REV__ENSG00000092067|ENST00000206513|CEBPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	594.8113403320312	2	594.811648	1187.60874	-0.77555	-0.00046131	0.14	8.3274E-05	-0.63555	-0.00037803	594.8115630504158	19.013	0.88543	18.895	18.658	19.543	-0.11872					43	17	3	0	0	0	1.118	1	357	357		30.318	2.4355	1	201480	+		60047	20922	42143	42206	65390	65390					0.022442366001541814
PRPELPGGAAS	11	Unmodified	_PRPELPGGAAS_					0	0	0		ENST00000245796.10_1_2:113955463-113958790:+|nuORF	ENST00000245796.10_1_2:113955463-113958790:+|nuORF	ENST00000245796.10_1_2:113955463-113958790:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2816162109375	2	526.28018	1050.54581	1.3455	0.00070811	1.9409	0.0010214	3.2864	0.0017296	526.281061256952	16.462	0.56144	16.308	16.195	16.756	-0.15376					28	15	3	0	0	0	1.0777	1	79	79		17.468	4.5088	1	205630			60048	11314	42144	42207	65391	65391					0.022556708121328484
PRPFCFSSD	9	Unmodified	_PRPFCFSSD_					0	0	0			REV__nc|ENSG00000150275|Q96QU1|PCDH15	REV__nc|ENSG00000150275|Q96QU1|PCDH15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2828979492188	2	528.234384	1054.45422	-0.93908	-0.00049605	-0.3035	-0.00016032	-1.2426	-0.00065637	528.234103982226	23.465	0.65832	23.404	23.111	23.77	-0.060862					24	15	2	0	0	0	0.024381	1	923	923		29.15	0	1	40921	+		60049	36778	42145	42208	65392	65392					-0.07083335876677666
PRPFSCLL	8	Unmodified	_PRPFSCLL_					0	0	0		ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2728271484375	2	466.754756	931.494958	-0.26769	-0.00012494	-2.4863	-0.0011605	-2.754	-0.0012854	466.7535691957668	20.586	1.0638	20.481	20.03	21.094	-0.10477					30	21	2	0	0	0	0.027866	1	574	574		21.702	0	1	41581			60050	13785	42146	42209	65393	65393					0.02647050233599657
PRPGCQPQAPL	11	Carbamidomethyl (C)	_PRPGC(Carbamidomethyl (C))QPQAPL_	PRPGC(1)QPQAPL		PRPGC(52)QPQAPL		0	1	0		ENST00000317025.12_1_8:38239444-38239783:-|nuORF	ENST00000317025.12_1_8:38239444-38239783:-|nuORF	ENST00000317025.12_1_8:38239444-38239783:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.54705810546875	3	407.545002	1219.61318	0.88564	0.00036094	3.9896	0.001626	4.8753	0.0019869	407.54656980391405	27.864	0.84452	27.946	27.608	28.453	0.081291					52	20	4	0	0	0	0.90172	1	1525	1525		51.528	6.5056	1	1322900			60051	12156	42147	42210	65394	65394	168				0.012153777514186004
PRPGCQPQAPL	11	Carbamidomethyl (C)	_PRPGC(Carbamidomethyl (C))QPQAPL_					0	1	0		ENST00000317025.12_1_8:38239444-38239783:-|nuORF	ENST00000317025.12_1_8:38239444-38239783:-|nuORF	ENST00000317025.12_1_8:38239444-38239783:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	407.545002	1219.61318	0.31023	0.00012643	5.1728	0.0021081	5.483	0.0022346	407.5469976121818	28.059	0.88691	28.059	27.726	28.613	0	0.049091	0.00057628	NaN	51.528	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1310300			60052	12156	42147	42210			168				0.012153777514186004
PRPGCQPQAPL	11	Carbamidomethyl (C)	_PRPGC(Carbamidomethyl (C))QPQAPL_					0	1	0		ENST00000317025.12_1_8:38239444-38239783:-|nuORF	ENST00000317025.12_1_8:38239444-38239783:-|nuORF	ENST00000317025.12_1_8:38239444-38239783:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	407.545002	1219.61318	0.055987	2.2817E-05	5.2271	0.0021303	5.2831	0.0021531	407.54705959068195	28.029	0.93207	28.024	27.692	28.624	-0.0042019	0.014834	0.00064278	NaN	51.528	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1341500			60053	12156	42147	42210			168				0.012153777514186004
PRPGLHRS	8	Unmodified	_PRPGLHRS_					0	0	0			REV__ENST00000466342.1_1_5:179250916-179260288:+|nuORF	REV__ENST00000466342.1_1_5:179250916-179260288:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2612609863281	2	460.264668	918.514782	-0.37688	-0.00017346	-3.5225	-0.0016213	-3.8994	-0.0017947	460.2628420064705	28.198	1.5044	28.193	27.581	29.085	-0.0042					85	36	4	0	0	0	0.97924	1	1601	1601		40.573	1.7665	1	1183300	+		60054	33031	42148	42211	65395	65395					0.052265622885556695
PRPGPPGK	8	Unmodified	_PRPGPPGK_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2375183105469	2	403.237587	804.460622	1.486	0.00059922	-1.2383	-0.00049933	0.24772	9.9891E-05	403.2369317697124	29.549	1.2375	29.627	28.979	30.216	0.078344					78	30	3	0	0	0	0.95417	1	1762	1762		44.531	0	1	3667800			60055	6136	42149	42212	65396	65396					0.050569701369909126
PRPGRARA	8	Unmodified	_PRPGRARA_					0	0	0		ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.76123046875	2	440.764835	879.515117	-1.0439	-0.0004601	-2.9709	-0.0013095	-4.0148	-0.0017696	440.76391276390723	38.863	0.64045	38.89	38.462	39.102	0.027275					25	16	2	0	0	0	0.027866	1	3240	3240		44.531	0	1	126650			60056	13653	42150	42213	65397	65397					0.07053982008403636
PRPGTRVH	8	Unmodified	_PRPGTRVH_					0	0	0			REV__ENST00000356207.9_1_8:38325941-38326043:-|nuORF	REV__ENST00000356207.9_1_8:38325941-38326043:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2618408203125	2	460.264668	918.514782	-0.37688	-0.00017346	-3.5225	-0.0016213	-3.8994	-0.0017947	460.2628420064705	28.198	1.5044	28.193	27.581	29.085	-0.0042					85	36	4	0	0	0	0.96719	1	1611	1611		42.474	0	1	1183300	+		60057	30788	42151	42214	65398	65398					0.052265622885556695
PRPGTRVH	8	Unmodified	_PRPGTRVH_					0	0	0			REV__ENST00000356207.9_1_8:38325941-38326043:-|nuORF	REV__ENST00000356207.9_1_8:38325941-38326043:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2615661621094	2	460.264668	918.514782	0.012143	5.5892E-06	-4.1924	-0.0019296	-4.1802	-0.001924	460.262506281111	27.969	1.5484	28.05	27.319	28.868	0.081291					85	38	4	0	0	0	0.94517	1	1550	1550		45.952	0	1	1451700	+		60058	30788	42151	42214	65399	65399					0.052265622885556695
PRPHSRPPG	9	Unmodified	_PRPHSRPPG_					0	0	0			REV__ENST00000425389.2_1_7:150068280-150068442:+|nuORF	REV__ENST00000425389.2_1_7:150068280-150068442:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8241271972656	2	500.7754	999.536246	-0.50735	-0.00025407	-2.8827	-0.0014436	-3.39	-0.0016976	500.77476387299504	33.592	0.57132	33.599	33.388	33.959	0.0066261					53	14	6	0	0	0	0.024292	1	2422	2422		58.782	12.016	1	870030	+		60059	32249	42152	42215	65400	65400					0.03645947317284026
PRPIPPVHH	9	Unmodified	_PRPIPPVHH_					0	0	0		ENST00000397620.6_1_15:37388598-37391110:-|nuORF;nc|ENSG00000134138|O14770-5|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.78271484375	2	525.303793	1048.59303	-0.6755	-0.00035484	-3.4592	-0.0018171	-4.1347	-0.002172	525.3018753461614	20.506	0.72915	20.401	19.932	20.661	-0.10477					28	14	3	0	0	0	0.024541	1	489	489		19.36	9.6543	1	157910			60060	4758	42153	42216	65401	65401					0.07067994873796124
PRPIPPVHH	9	Unmodified	_PRPIPPVHH_					0	0	0		ENST00000397620.6_1_15:37388598-37391110:-|nuORF;nc|ENSG00000134138|O14770-5|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.303793	1048.59303	1.3619	0.00071539	-5.5315	-0.0029057	-4.1696	-0.0021903	525.3008181667818	20.334	0.83767	20.403	20.069	20.907	0.068901	0.0069296	-0.0017103	NaN	12.959	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150730			60061	4758	42153	42216							0.07067994873796124
PRPIPPVHH	9	Unmodified	_PRPIPPVHH_					0	0	0		ENST00000397620.6_1_15:37388598-37391110:-|nuORF;nc|ENSG00000134138|O14770-5|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.303793	1048.59303	-0.128	-6.7239E-05	-3.9178	-0.002058	-4.0458	-0.0021253	525.3016308243621	20.591	0.54023	20.423	20.147	20.688	-0.16774	0.027209	-1.5018E-05	NaN	12.959	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135170			60062	4758	42153	42216							0.07067994873796124
PRPIPPVHH	9	Unmodified	_PRPIPPVHH_					0	0	0		ENST00000397620.6_1_15:37388598-37391110:-|nuORF;nc|ENSG00000134138|O14770-5|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	ENST00000397620.6_1_15:37388598-37391110:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.303793	1048.59303	-0.42002	-0.00022064	-3.6319	-0.0019078	-4.0519	-0.0021285	525.3017974659266	20.758	0.54572	20.534	20.216	20.762	-0.22344	0.13822	0.0002854	NaN	12.959	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114000			60063	4758	42153	42216							0.07067994873796124
PRPKKKQPPLP	11	Unmodified	_PRPKKKQPPLP_					0	0	0			REV__nc|ENSG00000119335|Q01105|SET	REV__nc|ENSG00000119335|Q01105|SET	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	643.402099609375	2	643.408789	1284.80303	-0.092507	-5.952E-05	-2.9258	-0.0018825	-3.0183	-0.001942	643.4071063933097	104.54	0.54574	104.37	104.11	104.66	-0.16791					31	14	3	0	0	0	1.0483	1	12994	12994		25.574	5.5773	1	307510	+		60064	36605	42154	42217	65402	65402					0.17201612756116447
PRPKRRSF	8	Unmodified	_PRPKRRSF_					0	0	0			REV__ENST00000229955.3_1_6:97246777-97247002:-|nuORF	REV__ENST00000229955.3_1_6:97246777-97247002:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	522.3167114257812	2	522.314692	1042.61483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.48	1	70.266	69.766	70.766	-0.21425								0	0	0	0.60555	1	8204	8204		47.916	17.412	1		+		60065	29405	42155	42218	65403	65403					0.09522799622368439
PRPLEACPLQT	11	Unmodified	_PRPLEACPLQT_					0	0	0		ENST00000268070.8_1_15:100514484-100533361:-|nuORF	ENST00000268070.8_1_15:100514484-100533361:-|nuORF	ENST00000268070.8_1_15:100514484-100533361:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.8875732421875	3	408.885024	1223.63324	-0.0055574	-2.2723E-06	1.5216	0.00062215	1.516	0.00061988	408.8859619385491	27.431	1.0186	27.189	26.744	27.763	-0.24217					41	23	3	0	0	0	0.024723	1	1531	1531		4.6433	0	1	53143			60066	11625	42156	42219	65404	65404					0.030371286913805307
PRPLIPPF	8	Unmodified	_PRPLIPPF_					0	0	0			REV__ENST00000296575.7_1_4:145567774-145567831:+|nuORF	REV__ENST00000296575.7_1_4:145567774-145567831:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.2601623535156	2	468.786913	935.559273	0.39412	0.00018476	-4.2902	-0.0020112	-3.8961	-0.0018264	468.7845555556541	23.362	1.7488	23.438	22.98	24.729	0.076239					54	39	2	0	0	0	0.027866	1	986	986		46.766	0	1	37292	+		60067	29999	42157	42220	65405	65405					0.08891573382038587
PRPLIPPF	8	Unmodified	_PRPLIPPF_					0	0	0			REV__ENST00000296575.7_1_4:145567774-145567831:+|nuORF	REV__ENST00000296575.7_1_4:145567774-145567831:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.786913	935.559273	-0.44803	-0.00021003	-3.809	-0.0017856	-4.257	-0.0019956	468.7848247413759	23.399	1.7206	23.338	22.844	24.564	-0.06086	-0.11263	0.00026719	NaN	46.766	57	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45693	+		60068	29999	42157	42220							0.08891573382038587
PRPPAAAK	8	Unmodified	_PRPPAAAK_					0	0	0		ENST00000471850.1_1_3:119298548-119305161:+|nuORF;ENST00000357003.7_1_3:119298548-119299463:+|nuORF;ENST00000478399.5_1_3:119298548-119298770:+|nuORF;ENST00000481816.5_3_3:119298332-119299463:+|nuORF	ENST00000471850.1_1_3:119298548-119305161:+|nuORF	ENST00000471850.1_1_3:119298548-119305161:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5922546386719	2	404.245412	806.476272	-0.03981	-1.6093E-05	0.092876	3.7545E-05	0.053067	2.1452E-05	404.24537346536596	37.968	0.47988	37.747	37.542	38.021	-0.22149					28	13	3	0	0	0	0.027866	1	3090	3090		12.959	11.494	1	445460			60069	12684	42158	42221	65406	65406					0.06529256654027904
PRPPGKGV	8	Unmodified	_PRPPGKGV_					0	0	0		ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.2451477050781	2	404.245412	806.476272	0.73539	0.00029728	-0.26116	-0.00010557	0.47423	0.00019171	404.2451528906643	32.278	1.7172	32.278	30.961	32.679	0					94	42	3	0	0	0	0.91239	2	2205	2205;2223		50.025	16.509	1	1756900			60070	9590	42159	42222	65407;65408	65407					0.06529256654050641
PRPPGKGV	8	Unmodified	_PRPPGKGV_					0	0	0		ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.24530029296875	2	404.245412	806.476272	1.6554	0.00066921	-1.1859	-0.00047938	0.46958	0.00018982	404.24477069411734	31.992	1.8055	32.056	30.698	32.504	0.064447					95	44	3	0	0	0	0.65272	3	2136	2125;2136;2150		71.378	24.611	1	1823100			60071	9590	42159	42222	65409;65410;65411	65410					0.06529256654050641
PRPPGRQAD	9	Unmodified	_PRPPGRQAD_					0	0	0			REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2624816894531	2	497.264865	992.515176	-0.96299	-0.00047886	-3.0672	-0.0015252	-4.0301	-0.002004	497.2631239256717	55.892	1.6292	55.735	54.863	56.492	-0.15655					103	43	4	0	0	0	0.62163	1	6056	6056		51.335	0	1	4499600	+		60072	31228	42160	42223	65412	65412					0.01861937217756804
PRPPKPPPP	9	Unmodified	_PRPPKPPPP_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.795166015625	2	491.795269	981.575986	-0.45249	-0.00022253	0.37295	0.00018342	-0.07953	-3.9113E-05	491.7953199787536	24.739	3.2875	24.739	23.822	27.109	0					175	77	4	0	0	0	0.40179	1	1142	1142		65.803	0	1	1407400	+		60073	23909	42161	42224	65413	65413					0.08446074267988024
PRPPKPPPP	9	Unmodified	_PRPPKPPPP_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7953796386719	2	491.795269	981.575986	-1.031	-0.00050703	0.96105	0.00047264	-0.069935	-3.4394E-05	491.7955952521363	24.824	3.4109	24.777	23.869	27.28	-0.047146					173	81	4	0	0	0	0.14199	2	1090	1090;1151		101.21	8.5128	1	1242000	+		60074	23909	42161	42224	65414;65415	65414					0.08446074267988024
PRPPPPQF	8	Unmodified	_PRPPPPQF_					0	0	0			REV__ENSG00000163380|ENST00000420581|LMOD3	REV__ENSG00000163380|ENST00000420581|LMOD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.26019287109375	2	468.25852	934.502486	0.69365	0.00032481	2.9917	0.0014009	3.6853	0.0017257	468.2599703843451	24.031	2.7749	24.109	23.353	26.127	0.078047					156	63	5	0	0	0	0.88442	1	997	997		52.299	2.2746	1	728920	+		60075	25561	42162	42225	65416	65416					0.03261525825519129
PRPPPPQF	8	Unmodified	_PRPPPPQF_					0	0	0			REV__ENSG00000163380|ENST00000420581|LMOD3	REV__ENSG00000163380|ENST00000420581|LMOD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.25852	934.502486	-0.34436	-0.00016125	6.53	0.0030577	6.1856	0.0028965	468.26037537705724	23.986	2.0406	23.986	23.283	25.324	0	-0.073245	0.002483	NaN	52.299	141	47	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663040	+		60076	25561	42162	42225							0.03261525825519129
PRPPPPQF	8	Unmodified	_PRPPPPQF_					0	0	0			REV__ENSG00000163380|ENST00000420581|LMOD3	REV__ENSG00000163380|ENST00000420581|LMOD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.25852	934.502486	-0.71644	-0.00033548	4.7461	0.0022224	4.0296	0.0018869	468.2605930877945	24.131	2.1414	24.083	23.36	25.502	-0.047148	0.024039	0.00081232	NaN	52.299	112	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468810	+		60077	25561	42162	42225							0.03261525825519129
PRPPPWIP	8	Unmodified	_PRPPPWIP_					0	0	0		ENST00000420968.5_1_22:23733901-23742504:-|nuORF	ENST00000420968.5_1_22:23733901-23742504:-|nuORF	ENST00000420968.5_1_22:23733901-23742504:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7502136230469	2	480.276712	958.538872	-0.87347	-0.00041951	-1.0414	-0.00050017	-1.9149	-0.00091968	480.2762716889654	30.258	0.66276	30.332	30.129	30.792	0.074316					36	15	4	0	0	0	0.027866	1	1888	1888		29.842	4.3914	1	357620			60078	13984	42163	42226	65417	65417					0.05794402722222003
PRPPQAQPS	9	Unmodified	_PRPPQAQPS_					0	0	0			REV__ENSG00000068400|ENST00000376423|GRIPAP1	REV__ENSG00000068400|ENST00000376423|GRIPAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.26947021484375	2	489.261791	976.509028	2.2187	0.0010855	1.225	0.00059934	3.4437	0.0016849	489.2622809380533	18.458	1.6018	18.458	18.087	19.689	0					63	32	3	0	0	0	0.72494	1	321	321		44.377	7.9304	1	148330	+		60079	20378	42164	42227	65418	65418					0.01983418986230845
PRPPRARGSL	10	Unmodified	_PRPPRARGSL_					0	0	0		ENST00000473986.1_1_2:69009370-69040541:+|nuORF	ENST00000473986.1_1_2:69009370-69040541:+|nuORF	ENST00000473986.1_1_2:69009370-69040541:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8311157226562	2	553.830706	1105.64686	-0.078213	-4.3317E-05	-1.2618	-0.0006988	-1.34	-0.00074212	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.089	1	11375	11375		34.173	0	1	4896800			60080	15019	42165	42228	65419	65419					0.09826167305527633
PRPPRARGSL	10	Unmodified	_PRPPRARGSL_					0	0	0		ENST00000473986.1_1_2:69009370-69040541:+|nuORF	ENST00000473986.1_1_2:69009370-69040541:+|nuORF	ENST00000473986.1_1_2:69009370-69040541:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8304443359375	2	553.830706	1105.64686	-0.33256	-0.00018418	-1.0785	-0.00059729	-1.411	-0.00078147	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.089	1	10845	10845		34.173	0.65696	1	6921700			60081	15019	42165	42228	65420	65420					0.09826167305527633
PRPPRIVL	8	Unmodified	_PRPPRIVL_					0	0	0			REV__ENST00000473570.5_1_1:155213939-155214352:-|nuORF	REV__ENST00000473570.5_1_1:155213939-155214352:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.79730224609375	2	474.311087	946.60762	0.050277	2.3847E-05	-0.068764	-3.2616E-05	-0.018488	-8.7689E-06	474.31103275201076	33.017	0.28834	32.785	32.627	32.916	-0.23107					11	6	2	0	0	0	0.027866	1	2336	2336		14.664	0	1	54274	+		60082	19119	42166	42229	65421	65421					0.13218067021921343
PRPQLLAR	8	Unmodified	_PRPQLLAR_					0	0	0			REV__ENSG00000104825|ENST00000313582|NFKBIB	REV__ENSG00000104825|ENST00000313582|NFKBIB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.7801513671875	2	475.798343	949.582134	-0.10033	-4.7737E-05	-0.047972	-2.2825E-05	-0.1483	-7.0562E-05	475.7981433263761	33.861	0.64411	33.918	33.654	34.298	0.056568					29	15	3	0	0	0	0.027866	1	2419	2419		12.959	0.75233	1	189650	+		60083	21468	42167	42230	65422	65422					0.10532592499521343
PRPRARSA	8	Unmodified	_PRPRARSA_					0	0	0		ENSG00000167941|ENST00000301691|SOST;nc|ENSG00000167941|Q9BQB4-2|SOST	REV__ENST00000610033.5_1_20:50140124-50159164:-|nuORF	REV__ENST00000610033.5_1_20:50140124-50159164:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2620849609375	2	455.770117	909.525681	2.7389	0.0012483	0.49956	0.00022769	3.2384	0.001476	455.77014807332597	18.523	0.93357	18.523	18.136	19.07	0					26	18	2	0	0	0	0.027866	1	330	330		18.324	0	1	41536			60084	7753	42168	42231	65423	65423					0.06729964662838483
PRPRHASP	8	Unmodified	_PRPRHASP_					0	0	0		ENST00000530878.5_2_1:162039737-162039962:+|nuORF	ENST00000530878.5_2_1:162039737-162039962:+|nuORF	ENST00000530878.5_2_1:162039737-162039962:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.25537109375	2	459.256843	916.499132	0.14252	6.5451E-05	-1.2585	-0.00057795	-1.1159	-0.0005125	459.2561942213754	29.033	0.54425	29.111	28.824	29.368	0.078346					38	13	4	0	0	0	0.95417	1	1724	1724		44.531	0.41427	1	5161100			60085	16246	42169	42232	65424	65424					0.037542757715073094
PRPRHSLG	8	Unmodified	_PRPRHSLG_					0	0	0			REV__ENST00000246533.7_1_19:36630878-36631924:+|nuORF	REV__ENST00000246533.7_1_19:36630878-36631924:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2618713378906	2	460.264668	918.514782	-0.37688	-0.00017346	-3.5225	-0.0016213	-3.8994	-0.0017947	460.2628420064705	28.198	1.5044	28.193	27.581	29.085	-0.0042					85	36	4	0	0	0	0.93274	1	1624	1624		47.916	1.1492	1	1183300	+		60086	29475	42170	42233	65425	65425					0.052265622885556695
PRPRHSLG	8	Unmodified	_PRPRHSLG_					0	0	0			REV__ENST00000246533.7_1_19:36630878-36631924:+|nuORF	REV__ENST00000246533.7_1_19:36630878-36631924:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	460.264668	918.514782	-0.37688	-0.00017346	-3.5225	-0.0016213	-3.8994	-0.0017947	460.2628420064705	28.198	1.5044	28.193	27.581	29.085	-0.0042	0.034032	9.6711E-05	NaN	47.916	85	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1183300	+		60087	29475	42170	42233							0.052265622885556695
PRPRHSLG	8	Unmodified	_PRPRHSLG_					0	0	0			REV__ENST00000246533.7_1_19:36630878-36631924:+|nuORF	REV__ENST00000246533.7_1_19:36630878-36631924:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	460.264668	918.514782	0.012143	5.5892E-06	-4.1924	-0.0019296	-4.1802	-0.001924	460.262506281111	27.969	1.5484	28.05	27.319	28.868	0.081291	-0.10916	-0.00051993	NaN	47.916	85	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1451700	+		60088	29475	42170	42233							0.052265622885556695
PRPRKPPPPP	10	Unmodified	_PRPRKPPPPP_					0	0	0			REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7781982421875	2	569.845825	1137.6771	0.012826	7.3086E-06	1.9286	0.001099	1.9414	0.0011063	569.8470174304334	53.374	0.37814	53.247	52.988	53.366	-0.12705					13	9	2	0	0	0	0.03519	1	5600	5600		27.882	18.177	1	118300	+		60089	21956	42171	42234	65426	65426					0.11376525970695184
PRPRKPPPPP	10	Unmodified	_PRPRKPPPPP_					0	0	0			REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	569.845825	1137.6771	0.11635	6.6302E-05	1.7111	0.00097508	1.8275	0.0010414	569.8467052685684	53.554	0.33237	53.296	53.075	53.408	-0.25838	0.046443	-0.00035307	NaN	20.947	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176120	+		60090	21956	42171	42234							0.11376525970695184
PRPRKPPPPP	10	Unmodified	_PRPRKPPPPP_					0	0	0			REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	569.845825	1137.6771	-0.07965	-4.5388E-05	2.6263	0.0014966	2.5467	0.0014512	570.3489953593053	53.4	0.22356	53.206	53.092	53.316	-0.19393	-0.043599	0.00068999	NaN	20.947	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119930	+		60091	21956	42171	42234							0.11376525970695184
PRPRPAASR	9	Unmodified	_PRPRPAASR_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2968444824219	2	504.296499	1006.57845	-0.057145	-2.8818E-05	-0.84698	-0.00042713	-0.90412	-0.00045595	504.2961960132727	18.802	2.191	18.67	18.352	20.543	-0.13148					113	44	4	0	0	0	0.94809	1	387	387		29.15	1.2673	1	6611200			60092	4453	42172	42235	65427	65427					0.0754192272564751
PRPRSVEK	8	Unmodified	_PRPRSVEK_					0	0	0		ENST00000280346.10_1_11:111895897-111896233:+|nuORF	ENST00000280346.10_1_11:111895897-111896233:+|nuORF	ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7749328613281	2	484.785433	967.556313	-0.27511	-0.00013337	0.37152	0.00018011	0.096412	4.6739E-05	484.78530154032785	26.071	1.1729	26.153	25.541	26.714	0.081291					52	27	3	0	0	0	0.027866	1	1172	1172		40.573	13.88	1	891450			60093	11713	42173	42236	65428	65428					0.07123698257237265
PRPSSCARLR	10	Unmodified	_PRPSSCARLR_					0	0	0		nc|ENSG00000272395|K9M1U5-2|IFNL4;nc|ENSG00000272395|K9M1U5|IFNL4	nc|ENSG00000272395|K9M1U5-2|IFNL4	nc|ENSG00000272395|K9M1U5-2|IFNL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.8174438476562	2	571.814199	1141.61384	1.6007	0.0009153	3.7962	0.0021707	5.3968	0.003086	571.8162667804685	19.693	0.67691	19.759	19.488	20.165	0.066195					30	13	3	0	0	0	0.86389	1	402	402		56.434	3.3448	1	296920			60094	18793	42174	42237	65429	65429					0.048702171911372716
PRPTLPLLL	9	Unmodified	_PRPTLPLLL_					0	0	0		ENST00000309993.2_1_3:135870268-135870334:-|nuORF	ENST00000309993.2_1_3:135870268-135870334:-|nuORF	ENST00000309993.2_1_3:135870268-135870334:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2743835449219	2	510.334227	1018.6539	0.52243	0.00026662	-0.34727	-0.00017723	0.17516	8.9391E-05	510.33385636125143	71.63	1.9868	71.342	70.633	72.62	-0.28858					92	50	3	0	0	0	0.024447	1	8553	8553		25.574	0	1	334380			60095	12053	42175	42238	65430	65430					0.1453208713337517
PRPVLRAL	8	Unmodified	_PRPVLRAL_					0	0	0		ENST00000555324.1_1_14:94545323-94547480:-|nuORF;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENSG00000089737|ENST00000621632|DDX24	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.3024597167969	2	461.303262	920.59197	-0.76636	-0.00035352	0.53599	0.00024725	-0.23037	-0.00010627	461.30335455327105	45.972	0.66499	45.821	45.544	46.209	-0.15156					41	18	3	0	0	0	0.68535	1	4493	4493		68.485	5.5063	1	1714700			60096	1914	42176	42239	65431	65431					0.12849780504882347
PRPVYSFP	8	Unmodified	_PRPVYSFP_					0	0	0			REV__UGT1A1|p.S250Wfs*11|1|0.22|ENSG00000241635|chr2:233761035-233761036|-/GGACAGTCAC|frameshift_variant	REV__UGT1A1|p.S250Wfs*11|1|0.22|ENSG00000241635|chr2:233761035-233761036|-/GGACAGTCAC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.27911376953125	2	481.758352	961.502152	0.24349	0.0001173	0.25364	0.00012219	0.49712	0.00023949	481.75794722102495	68.056	0.47011	67.767	67.47	67.94	-0.28834					16	11	2	0	0	0	0.027866	1	8081	8081		13.775	0.81615	1	179960	+		60097	28969	42177	42240	65432	65432					0.019861061056644758
PRQGWARR	8	Unmodified	_PRQGWARR_					0	0	0			REV__ENST00000261263.4_1_12:72148721-72148823:+|nuORF	REV__ENST00000261263.4_1_12:72148721-72148823:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.789794921875	2	513.788841	1025.56313	-0.8553	-0.00043944	4.3221	0.0022206	3.4668	0.0017812	513.7907870235442	21.793	0.80308	21.793	21.441	22.245	0					43	16	4	0	0	0	0.81662	1	714	714		57.811	15.415	1	2030300	+		60098	29617	42178	42241	65433	65433					0.05137055928435075
PRQGWARR	8	Unmodified	_PRQGWARR_					0	0	0			REV__ENST00000261263.4_1_12:72148721-72148823:+|nuORF	REV__ENST00000261263.4_1_12:72148721-72148823:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7898559570312	2	513.788841	1025.56313	-0.42972	-0.00022078	3.1644	0.0016258	2.7347	0.0014051	513.79049546212	21.846	0.7565	21.756	21.453	22.209	-0.089573					43	15	4	0	0	0	0.56067	1	709	709		79.939	10.312	1	1844800	+		60099	29617	42178	42241	65434	65434					0.05137055928435075
PRQGWGVL	8	Unmodified	_PRQGWGVL_					0	0	0		ENST00000337318.7_2_10:126311712-126311814:-|nuORF	ENST00000337318.7_2_10:126311712-126311814:-|nuORF	ENST00000337318.7_2_10:126311712-126311814:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7550354003906	2	456.756144	911.497735	-0.62705	-0.00028641	-3.5263	-0.0016107	-4.1534	-0.0018971	456.7544793654189	22.588	0.7888	22.662	22.365	23.154	0.073954					45	16	4	0	0	0	1.0017	1	755	755		37.028	1.4102	1	832010			60100	12420	42179	42242	65435	65435					0.03844641682758265
PRQGWPRCP	9	Unmodified	_PRQGWPRCP_					0	0	0			REV__ENST00000557552.1_1_14:105239464-105240028:-|nuORF	REV__ENST00000557552.1_1_14:105239464-105240028:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2952880859375	2	548.777085	1095.53962	-0.07055	-3.8716E-05	2.4527	0.001346	2.3822	0.0013073	548.7788582779513	19.672	0.2239	19.672	19.511	19.735	0					6	4	2	0	0	0	0.024506	1	443	443		16.473	0	1	17320	+		60101	35074	42180	42243	65436	65436					-0.004331259003720334
PRQILKKR	8	Unmodified	_PRQILKKR_					0	0	0		ENST00000215794.7_1_22:18640479-18640539:+|nuORF	ENST00000215794.7_1_22:18640479-18640539:+|nuORF	ENST00000215794.7_1_22:18640479-18640539:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8191528320312	2	519.848368	1037.68218	-1.2356	-0.0006423	-4.3428	-0.0022576	-5.5783	-0.0028999	519.8458689726571	38.562	0.20662	38.562	38.473	38.68	0					5	4	2	0	0	0	0.027866	1	3254	3254		25.45	6.0902	1	24974			60102	11143	42181	42244	65437	65437					0.1648482983332542
PRQIYSPVPR	10	Unmodified	_PRQIYSPVPR_					0	0	0			REV__ENSG00000164024|ENST00000296411|METAP1	REV__ENSG00000164024|ENST00000296411|METAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.21466064453125	3	404.899773	1211.67749	0.17134	6.9375E-05	-0.057604	-2.3324E-05	0.11374	4.6051E-05	404.89957345219455	28.676	0.6258	28.676	28.406	29.032	0					28	14	2	0	0	0	0.03519	1	1670	1670		37.508	5.9784	1	202870	+		60103	25671	42182	42245	65438	65438					0.08011900899896318
PRQIYSPVPR	10	Unmodified	_PRQIYSPVPR_					0	0	0			REV__ENSG00000164024|ENST00000296411|METAP1	REV__ENSG00000164024|ENST00000296411|METAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	404.899773	1211.67749	0.15999	6.4781E-05	0.14614	5.917E-05	0.30613	0.00012395	404.89974838422955	28.446	0.97096	28.277	27.926	28.897	-0.16897	-0.11218	-0.00025296	NaN	37.508	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931370	+		60104	25671	42182	42245							0.08011900899896318
PRQIYSPVPR	10	Unmodified	_PRQIYSPVPR_					0	0	0			REV__ENSG00000164024|ENST00000296411|METAP1	REV__ENSG00000164024|ENST00000296411|METAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	404.899773	1211.67749	-0.69407	-0.00028103	0.75871	0.0003072	0.064639	2.6173E-05	404.8999772000151	28.446	0.82365	28.294	28	28.824	-0.15195	-0.095515	0.00049113	NaN	37.508	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1079700	+		60105	25671	42182	42245							0.08011900899896318
PRQKKQGM	8	Unmodified	_PRQKKQGM_					0	0	0			REV__ENST00000475280.1_1_16:128308-129705:+|nuORF	REV__ENST00000475280.1_1_16:128308-129705:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29052734375	2	486.774011	971.533469	-0.49744	-0.00024214	3.7993	0.0018494	3.3018	0.0016073	486.7763375408643	27.665	0.64254	27.652	27.314	27.957	-0.012983					37	16	3	0	0	0	0.027866	1	1513	1513		44.531	0	1	652380	+		60106	21359	42183	42246	65439	65439					0.04656355868121409
PRQKWGAKL	9	Unmodified	_PRQKWGAKL_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3246459960938	2	542.324725	1082.6349	-0.84912	-0.0004605	0.13694	7.4268E-05	-0.71217	-0.00038623	542.324773667838	45.359	1.1588	45.359	45.114	46.273	0					78	33	4	0	0	0	0.29104	2	4431	4420;4431		76.847	23.91	1	4576500	+		60107	19918	42184	42247	65440;65441	65441					0.09688550562327691
PRQKWGAKL	9	Unmodified	_PRQKWGAKL_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	542.324725	1082.6349	-0.84912	-0.0004605	0.13694	7.4268E-05	-0.71217	-0.00038623	542.324773667838	45.359	1.1588	45.359	45.114	46.273	0	-0.037979	-0.00010765	NaN	76.847	78	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4576500	+		60108	19918	42184	42247							0.09688550562327691
PRQKWGAKL	9	Unmodified	_PRQKWGAKL_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	542.324725	1082.6349	-1.1109	-0.00060247	0.42975	0.00023306	-0.68115	-0.0003694	542.3249715957542	45.502	1.1981	45.353	45.115	46.313	-0.1488	-0.044238	0.00020995	NaN	76.847	76	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5443700	+		60109	19918	42184	42247							0.09688550562327691
PRQLFSAL	8	Unmodified	_PRQLFSAL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000564785.5_1_15:75652863-75653028:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.75341796875	2	466.271627	930.528701	-1.4786	-0.00068943	4.3558	0.002031	2.8772	0.0013416	466.2736325405913	29.592	0.64943	29.592	29.487	30.137	0					28	15	2	0	0	0	0.027866	1	1865	1865		47.916	0	1	5315900			60110	5409	42185	42248	65442	65442					0.06065794997005014
PRQLFSAL	8	Unmodified	_PRQLFSAL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000564785.5_1_15:75652863-75653028:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7527770996094	2	466.271627	930.528701	-0.4205	-0.00019607	3.8095	0.0017763	3.389	0.0015802	466.27341696924776	29.569	1.1068	29.572	29.469	30.576	0.0031357					37	26	2	0	0	0	0.027866	1	1838	1838		79.939	24.435	1	6486700			60111	5409	42185	42248	65443	65443					0.06065794997005014
PRQLQVLIS	9	Unmodified	_PRQLQVLIS_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3054809570312	2	527.324391	1052.63423	-0.27082	-0.00014281	-0.40615	-0.00021417	-0.67698	-0.00035699	527.3239779461188	31.994	0.59524	32.058	31.721	32.317	0.064095					32	14	3	0	0	0	0.023635	1	2096	2096		76.774	21.998	1	323640			60112	6750	42186	42249	65444	65444					0.11001711122617053
PRQLSLSTF	9	Unmodified	_PRQLSLSTF_					0	0	0		ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.267822265625	2	524.792924	1047.57129	-1.3024	-0.00068347	1.5365	0.00080636	0.23418	0.00012289	524.7932228357337	43.326	0.76252	43.326	42.823	43.585	0					25	20	2	0	0	0	0.023417	1	4052	4052		79.451	10.966	1	108560			60113	11778	42187	42250	65445	65445					0.049411453345555856
PRQLSLSTF	9	Unmodified	_PRQLSLSTF_					0	0	0		ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2681884765625	2	524.792924	1047.57129	-0.79212	-0.0004157	1.0866	0.00057023	0.29446	0.00015453	524.7930231396336	43.538	0.61782	43.395	42.988	43.605	-0.14283					24	16	2	0	0	0	0.023417	1	4065	4065		79.451	21.64	1	85791			60114	11778	42187	42250	65446	65446					0.049411453345555856
PRQLSQAL	8	Unmodified	_PRQLSQAL_					0	0	0		nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.766845703125	2	456.766709	911.518865	0.017596	8.0373E-06	-0.69705	-0.00031839	-0.67946	-0.00031035	456.7664708931498	23.19	1.5009	23.19	22.665	24.166	0					120	34	5	0	0	0	0.44658	2	925	875;925		90.777	5.6158	1	22732000			60115	10848	42188	42251	65447;65448	65448					0.05956606991605895
PRQLSQAL	8	Unmodified	_PRQLSQAL_					0	0	0		nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7669982910156	2	456.766709	911.518865	-0.3124	-0.0001427	-0.36958	-0.00016881	-0.68198	-0.00031151	456.7666391219193	23.195	1.3674	23.134	22.663	24.03	-0.060862					88	31	3	0	0	0	0.50239	2	916	844;916		85.359	5.6469	1	21323000			60116	10848	42188	42251	65449;65450	65450					0.05956606991605895
PRQLSQAL	8	Unmodified	_PRQLSQAL_					0	0	0		nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7665710449219	2	456.766709	911.518865	-0.30931	-0.00014128	-0.43086	-0.0001968	-0.74017	-0.00033808	456.76661331979113	23.06	1.5263	23.137	22.656	24.182	0.076241					120	34	5	0	0	0	0.44658	4	802	793;802;862;876		90.777	7.5455	1	22697000			60117	10848	42188	42251	65451;65452;65453;65454	65452					0.05956606991605895
PRQPLVGSSL	10	Unmodified	_PRQPLVGSSL_					0	0	0			REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3054809570312	2	527.306198	1052.59784	-0.20663	-0.00010896	-0.32578	-0.00017179	-0.53242	-0.00028075	527.305979578546	31.596	1.8134	31.665	30.621	32.434	0.06896					118	44	4	0	0	0	0.28861	1	2096	2096		110.12	6.0631	1	4808300	+		60118	26954	42189	42252	65455	65455					0.07364834225927552
PRQPPVGPPAP	11	Unmodified	_PRQPPVGPPAP_					0	0	0			REV__ENST00000565396.5_1_16:2052722-2053019:-|nuORF	REV__ENST00000565396.5_1_16:2052722-2053019:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.3157958984375	2	556.81419	1111.61383	-0.64909	-0.00036142	1.4709	0.00081902	0.82182	0.0004576	557.3170574106189	21.628	1.1987	21.538	21.01	22.209	-0.090092					80	24	5	0	0	0	1.0119	1	669	669		34.173	6.2903	1	648210	+		60119	35274	42190	42253	65456	65456					0.062485404627977914
PRQQECGI	8	Unmodified	_PRQQECGI_					0	0	0		nc|ENSG00000130159|Q9BQ95-4|ECSIT;nc|ENSG00000130159|Q9BQ95-2|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-4|ECSIT	nc|ENSG00000130159|Q9BQ95-4|ECSIT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7509460449219	2	465.726726	929.4389	-1.5298	-0.00071246	-4.1983	-0.0019553	-5.7281	-0.0026677	465.72519382298697	29.664	0.39972	29.664	29.333	29.732	0					12	9	2	0	0	0	0.027866	1	1841	1841		50.025	28.065	1	46215			60120	4389	42191	42254	65457	65457					-0.02864202673890759
PRQQGDSFVVQ	11	Unmodified	_PRQQGDSFVVQ_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	OPSCC_40_ClassI_Rep-2	5	420.8821716308594	3	420.882559	1259.62585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.817	1	17.611	17.111	18.111	-0.20669								0	0	0	1.3485	1	220	220		23.378	4.1152	1		+		60121	26186	42192	42255	65458	65458					0.006421124153121127
PRQRHHKEFKF	11	Unmodified	_PRQRHHKEFKF_					0	0	0		ENSG00000153162|ENST00000283147|BMP6	ENSG00000153162|ENST00000283147|BMP6	ENSG00000153162|ENST00000283147|BMP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7880859375	3	503.944376	1508.8113	0.75029	0.0003781	3.847	0.0019387	4.5973	0.0023168	503.94623927453245	19.601	0.39721	19.4	19.255	19.653	-0.2001					12	7	2	0	0	0	0.02484	1	451	451		12.433	4.3985	1	42941			60122	6325	42193	42256	65459	65459					0.07724559725443214
PRQRLLVL	8	Unmodified	_PRQRLLVL_					0	0	0		PCDHA10|p.D783Efs*28|1|0.38|ENSG00000250120|chr5:140858397-140858397|C/-|frameshift_variant;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;ENSG00000204961|ENST00000532602|PCDHA9;nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10	REV__ENSG00000140470|ENST00000268070|ADAMTS17;nc|ENSG00000204961|Q9Y5H5-2|PCDHA9;nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.8296813964844	2	497.829643	993.644734	-0.75614	-0.00037643	0.33926	0.0001689	-0.41687	-0.00020753	497.8297505849709	51.819	1.542	51.906	51.61	53.152	0.087006					101	40	4	0	0	0	0.88442	1	5460	5460		52.299	4.3836	1	7223100			60123	24020;10396;10846	42194	42257	65460	65460					0.14765738567689368
PRQRPRLRWRK	11	Unmodified	_PRQRPRLRWRK_					0	0	0			REV__ENST00000331593.5_1_1:39957407-39957644:+|nuORF	REV__ENST00000331593.5_1_1:39957407-39957644:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8308715820312	3	516.986798	1547.93856	-0.034852	-1.8018E-05	-3.3811	-0.001748	-3.416	-0.001766	516.9849157100161	53.916	0.15473	53.671	53.591	53.746	-0.2453					7	4	2	0	0	0	0.024892	1	5671	5671		8.7993	7.3806	1	97390	+		60124	30478	42195	42258	65461	65461					0.1865132539028309
PRQTNYIR	8	Unmodified	_PRQTNYIR_					0	0	0		KRTAP15-1|p.S94F|1|0.12|ENSG00000186970|chr21:30440608-30440608|C/T|missense_variant;ENSG00000186970|ENST00000334067|KRTAP15-1	KRTAP15-1|p.S94F|1|0.12|ENSG00000186970|chr21:30440608-30440608|C/T|missense_variant	KRTAP15-1|p.S94F|1|0.12|ENSG00000186970|chr21:30440608-30440608|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2881469726562	2	524.28834	1046.56213	-1.3974	-0.00073262	0.68298	0.00035808	-0.71438	-0.00037454	524.2887223328601	28.554	1.0896	28.308	27.921	29.011	-0.24524					77	25	5	0	0	0	0.97794	1	1681	1681		40.778	0	1	3608600			60125	9597	42196	42259	65462	65462					0.04070796768883156
PRQVMVVPV	9	Unmodified	_PRQVMVVPV_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000509410.1_1_5:33461160-33466106:+|nuORF	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7685546875	2	512.802237	1023.58992	-0.69924	-0.00035857	3.9828	0.0020424	3.2836	0.0016838	512.8042506140782	38.958	0.20436	38.735	38.686	38.891	-0.22311					9	5	2	0	0	0	0.024443	1	3262	3262		35.201	0	1	179040			60126	3293	42197	42260	65463	65463					0.07906983704788217
PRQWFSCQWHP	11	Unmodified	_PRQWFSCQWHP_					0	0	0		ENST00000078429.8_1_19:3123337-3123766:+|nuORF	ENST00000078429.8_1_19:3123337-3123766:+|nuORF	ENST00000078429.8_1_19:3123337-3123766:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7955017089844	3	491.227784	1470.66152	-1.0355	-0.00050869	-2.5667	-0.0012608	-3.6022	-0.0017695	491.22646863864685	25.121	0.46005	25.087	24.815	25.275	-0.034397					16	10	2	0	0	0	0.02484	1	1151	1151		22.562	4.7284	1	63254			60127	11109	42198	42261	65464	65464					-0.05498128608655861
PRQWVAGQ	8	Unmodified	_PRQWVAGQ_					0	0	0		SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|46|1|anti-sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|46|1|anti-sense	SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|46|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.29022216796875	2	471.251226	940.487899	-0.55168	-0.00025998	1.6354	0.00077067	1.0837	0.00051069	471.25136416812313	27.532	1.5427	27.364	26.506	28.048	-0.16816					87	36	4	0	0	0	0.027866	1	1561	1561		23.042	2.0956	1	702300			60128	37983	42199	42262	65465	65465					0.01527453677374524
PRRAAVVE	8	Unmodified	_PRRAAVVE_					0	0	0			REV__ENST00000257940.6_1_12:56512934-56514437:+|nuORF	REV__ENST00000257940.6_1_12:56512934-56514437:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7749328613281	2	449.266876	896.519199	-0.54862	-0.00024648	0.78227	0.00035145	0.23365	0.00010497	449.2669914126297	23.013	0.34764	23.087	22.884	23.232	0.073954					14	7	3	0	0	0	0.027866	1	840	840		38.806	8.3025	1	78687	+		60129	29573	42200	42263	65466	65466					0.06680026711467235
PRRAFGDV	8	Unmodified	_PRRAFGDV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2544250488281	2	459.251226	916.487899	-0.28865	-0.00013256	1.6199	0.00074395	1.3313	0.00061139	459.25181116566955	21.348	0.24532	21.258	21.158	21.403	-0.090092					6	4	2	0	0	0	0.027866	1	634	634		25.45	13.243	1	8689.3			60130	4929	42201	42264	65467	65467					0.026314536773725195
PRRAFGDV	8	Unmodified	_PRRAFGDV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	459.251226	916.487899	-0.11396	-5.2336E-05	-0.71151	-0.00032676	-0.82547	-0.0003791	459.2505252502548	21.634	0.14398	21.444	21.372	21.516	-0.19072	0.080901	-0.00106	NaN	25.45	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8142.2			60131	4929	42201	42264							0.026314536773725195
PRRAFGDV	8	Unmodified	_PRRAFGDV_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	459.251226	916.487899	-1.055	-0.00048449	0.83696	0.00038438	-0.218	-0.00010012	459.2506814567693	21.599	0.28941	21.386	21.266	21.555	-0.2128	0.023461	0.00036223	NaN	25.45	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13043			60132	4929	42201	42264							0.026314536773725195
PRRAPRPCLSL	11	Unmodified	_PRRAPRPCLSL_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3704223632812	2	633.366598	1264.71864	0.30625	0.00019397	3.5824	0.002269	3.8887	0.0024629	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.98904	1	12034	12034		39.253	5.3312	1	9528000			60133	2892	42202	42265	65468	65468					0.09687338667731638
PRRASALLG	9	Unmodified	_PRRASALLG_					0	0	0		ENST00000562435.5_1_16:47165930-47177876:-|nuORF	ENST00000562435.5_1_16:47165930-47177876:-|nuORF	ENST00000562435.5_1_16:47165930-47177876:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.7881774902344	2	470.787976	939.561398	0.34064	0.00016037	-1.2779	-0.00060161	-0.93724	-0.00044124	470.7874153199194	23.68	1.6132	23.757	23.476	25.089	0.076241					87	35	5	0	0	0	0.72875	1	898	898		44.117	5.3107	1	12786000			60134	16840	42203	42266	65469	65469					0.08920002119850778
PRRASALLG	9	Unmodified	_PRRASALLG_					0	0	0		ENST00000562435.5_1_16:47165930-47177876:-|nuORF	ENST00000562435.5_1_16:47165930-47177876:-|nuORF	ENST00000562435.5_1_16:47165930-47177876:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.787976	939.561398	0.026664	1.2553E-05	0.038637	1.819E-05	0.065302	3.0743E-05	470.7879440209717	24.16	0.17834	23.985	23.829	24.007	-0.17484	0.14243	0.00085421	NaN	44.117	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19711			60135	16840	42203	42266							0.08920002119850778
PRRASALLG	9	Unmodified	_PRRASALLG_					0	0	0		ENST00000562435.5_1_16:47165930-47177876:-|nuORF	ENST00000562435.5_1_16:47165930-47177876:-|nuORF	ENST00000562435.5_1_16:47165930-47177876:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	470.787976	939.561398	1.6965	0.00079868	-1.2688	-0.00059733	0.4277	0.00020135	470.787184035613	24.187	0.26907	24.006	23.759	24.028	-0.18089	0.16295	-0.00037683	NaN	44.117	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27738			60136	16840	42203	42266							0.08920002119850778
PRRELSSRLL	10	Unmodified	_PRRELSSRLL_					0	0	0			REV__ENST00000423260.1_1_6:16762458-16762656:+|nuORF	REV__ENST00000423260.1_1_6:16762458-16762656:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.58258056640625	3	409.582444	1225.7255	0.49309	0.00020196	-0.27719	-0.00011353	0.2159	8.8428E-05	409.58223162658066	35.052	1.4492	35.096	34.756	36.205	0.04406					91	38	4	0	0	0	1.0814	1	2612	2612		35.178	1.0917	1	1876100	+		60137	32214	42204	42267	65470	65470					0.12166974819956522
PRRGALFF	8	Unmodified	_PRRGALFF_					0	0	0			REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.28350830078125	2	482.279786	962.54502	3.6671	0.0017686	3.9767	0.0019179	7.6439	0.0036865	482.28160481046916	17.78	0.68739	17.78	17.449	18.136	0					27	13	3	0	0	0	0.9224	1	212	212		49.211	1.2952	1	96476	+		60138	32656	42205	42268	65471	65471					0.06224920953752644
PRRGALFF	8	Unmodified	_PRRGALFF_					0	0	0			REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	482.279786	962.54502	3.6671	0.0017686	3.9767	0.0019179	7.6439	0.0036865	482.28160481046916	17.78	0.68739	17.78	17.449	18.136	0	-0.044978	-0.001278	NaN	49.211	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96476	+		60139	32656	42205	42268							0.06224920953752644
PRRGAVLPGV	10	Unmodified	_PRRGAVLPGV_					0	0	0			REV__ENSG00000185245|ENST00000329125|GP1BA	REV__ENSG00000185245|ENST00000329125|GP1BA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.31512451171875	2	511.3169	1020.61925	-0.59843	-0.00030599	0.18889	9.6584E-05	-0.40953	-0.0002094	511.3168862333682	22.409	1.1706	22.409	21.723	22.894	0					56	24	4	0	0	0	1.1329	1	794	794		27.882	2.3082	1	529700			60140	27744	42206	42269	65472	65472					0.10976264045291373
PRRGENGKRGL	11	Unmodified	_PRRGENGKRGL_					0	0	0		ENST00000502506.6_1_19:19626614-19626731:+|nuORF	ENST00000502506.6_1_19:19626614-19626731:+|nuORF	ENST00000502506.6_1_19:19626614-19626731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.74267578125	3	413.90581	1238.6956	-0.32593	-0.0001349	1.9385	0.00080236	1.6126	0.00066745	413.90654870660103	37.564	0.49299	37.5	37.232	37.725	-0.063389					32	13	3	0	0	0	0.024809	1	3021	3021		22.562	9.0536	1	287140			60141	15671	42207	42270	65473	65473					0.08580035874592795
PRRGGCVFL	9	Unmodified	_PRRGGCVFL_					0	0	0		ENST00000326724.8_1_17:79108192-79108276:-|nuORF	ENST00000326724.8_1_17:79108192-79108276:-|nuORF	ENST00000326724.8_1_17:79108192-79108276:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7742919921875	2	502.776554	1003.53855	-0.90271	-0.00045386	-3.7334	-0.0018771	-4.6361	-0.0023309	502.7744210359641	90.264	1.1948	90.264	89.816	91.011	0					70	28	4	0	0	0	0.4855	1	11416	11416		60.294	1.512	1	1064200			60142	12283	42208	42271	65474	65474					0.03692659730711512
PRRGLSPP	8	Unmodified	_PRRGLSPP_					0	0	0		ENST00000425773.1_1_20:57089925-57090084:-|nuORF	ENST00000425773.1_1_20:57089925-57090084:-|nuORF	ENST00000425773.1_1_20:57089925-57090084:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.26141357421875	2	440.261594	878.508634	-0.063303	-2.787E-05	0.44743	0.00019699	0.38413	0.00016912	440.26163688483837	19.83	1.1112	19.711	19.348	20.459	-0.11872					57	22	4	0	0	0	0.99042	1	440	440		38.806	0.99462	1	862290			60143	14069	42209	42272	65475	65475					0.06452044057039075
PRRGPESLP	9	Unmodified	_PRRGPESLP_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.777587890625	2	504.78289	1007.55123	-1.2218	-0.00061676	0.72211	0.00036451	-0.49974	-0.00025226	504.7829295840442	28.915	0.52726	28.915	28.696	29.223	0					18	12	2	0	0	0	0.024292	1	1707	1707		68.787	26.312	1	85723			60144	9877	42210	42273	65476	65476					0.047753943946077015
PRRGPESLP	9	Unmodified	_PRRGPESLP_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.78289	1007.55123	-0.65475	-0.00033051	0.4291	0.0002166	-0.22565	-0.0001139	504.7831523078354	28.869	0.34166	28.873	28.672	29.014	0.0031376	0.096843	-0.00012468	NaN	68.787	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103040			60145	9877	42210	42273							0.047753943946077015
PRRGPESLP	9	Unmodified	_PRRGPESLP_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.78289	1007.55123	0.069291	3.4977E-05	-0.26756	-0.00013506	-0.19827	-0.00010008	504.782606818989	28.628	0.37463	28.709	28.493	28.867	0.080811	-0.066563	-0.00082801	NaN	68.787	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82742			60146	9877	42210	42273							0.047753943946077015
PRRHPSGL	8	Unmodified	_PRRHPSGL_					0	0	0			REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2619934082031	2	460.264668	918.514782	-0.65066	-0.00029948	-3.1592	-0.0014541	-3.8099	-0.0017536	460.2629800650599	28.235	1.3378	28.235	27.653	28.99	0					72	32	4	0	0	0	0.94517	1	1640	1640		45.952	3.4775	1	1099500	+		60147	21552	42211	42274	65477	65477					0.05226562288567038
PRRHPSGL	8	Unmodified	_PRRHPSGL_					0	0	0			REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.26190185546875	2	460.264668	918.514782	0.012143	5.5892E-06	-4.1924	-0.0019296	-4.1802	-0.001924	460.262506281111	27.969	1.5484	28.05	27.319	28.868	0.081291					85	38	4	0	0	0	0.94517	1	1534	1534		45.952	3.4775	1	1451700	+		60148	21552	42211	42274	65478	65478					0.05226562288567038
PRRKSGPLN	9	Unmodified	_PRRKSGPLN_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.805419921875	2	512.804157	1023.59376	-1.0019	-0.00051375	3.6493	0.0018714	2.6474	0.0013576	512.8058724795176	80.308	0.75316	80.329	79.98	80.733	0.021439					44	17	4	0	0	0	0.80003	1	9901	9901		39.253	5.7372	1	902080	+		60149	19339	42212	42275	65479	65479					0.08290789522845898
PRRLERLLGT	10	Unmodified	_PRRLERLLGT_					0	0	0			REV__ENST00000409870.1_1_2:191045641-191045836:+|nuORF	REV__ENST00000409870.1_1_2:191045641-191045836:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.868896484375	2	605.872571	1209.73059	0.74452	0.00045108	-1.4277	-0.00086503	-0.68322	-0.00041395	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	1.1246	1	12299	12299		23.523	3.4922	1	1081300	+		60150	31974	42213	42276	65480	65480					0.13411278682542616
PRRLRNQTLR	10	Unmodified	_PRRLRNQTLR_					0	0	0		ENST00000328848.5_1_15:34633997-34634156:-|nuORF	ENST00000328848.5_1_15:34633997-34634156:-|nuORF	ENST00000328848.5_1_15:34633997-34634156:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.93402099609375	3	437.268971	1308.78508	0.69038	0.00030188	-2.4693	-0.0010797	-1.7789	-0.00077785	437.26780987152426	20.649	1.4703	20.454	20.138	21.608	-0.19577					50	29	3	0	0	0	0.03519	1	552	552		20.03	4.0237	1	327370			60151	12307	42214	42277	65481	65481					0.14304290553968713
PRRPGRPD	8	Unmodified	_PRRPGRPD_					0	0	0		MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant;ENSG00000102996|ENST00000219271|MMP15	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MMP15|p.S505Rfs*11|1|0.2|ENSG00000102996|chr16:58043570-58043571|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7924499511719	2	475.767575	949.520596	0.66029	0.00031414	1.6403	0.00078038	2.3006	0.0010945	475.7683003122974	56.478	0.50077	56.478	56.277	56.778	0					21	13	2	0	0	0	0.027866	1	6280	6280		42.396	3.59	1	338680			60152	2453	42215	42278	65482	65482					0.04381660800231657
PRRPLLPTI	9	Unmodified	_PRRPLLPTI_					0	0	0		NCEH1-CCDC50|1|fusion;ENSG00000152492|ENST00000392455|CCDC50	NCEH1-CCDC50|1|fusion	NCEH1-CCDC50|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.842529296875	2	531.842751	1061.67095	-0.88284	-0.00046953	0.01078	5.7334E-06	-0.87206	-0.0004638	531.8427301514997	51.466	1.4974	51.318	50.828	52.326	-0.14735					110	41	5	0	0	0	0.92825	1	5444	5444		30.504	1.3541	1	9916600			60153	6276	42216	42279	65483	65483					0.14258007739181267
PRRPLLPTI	9	Unmodified	_PRRPLLPTI_					0	0	0		NCEH1-CCDC50|1|fusion;ENSG00000152492|ENST00000392455|CCDC50	NCEH1-CCDC50|1|fusion	NCEH1-CCDC50|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8427124023438	2	531.842751	1061.67095	-1.2085	-0.00064275	0.40339	0.00021454	-0.80514	-0.00042821	531.8429371334788	51.191	1.3698	51.278	50.785	52.155	0.087009					109	37	5	0	0	0	0.83071	1	5378	5378		37.159	1.5408	1	8850700			60154	6276	42216	42279	65484	65484					0.14258007739181267
PRRPPTGPA	9	Unmodified	_PRRPPTGPA_					0	0	0			REV__ENSG00000171794|ENST00000304477|UTF1	REV__ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.7722473144531	2	474.772326	947.530098	-0.28282	-0.00013428	0.088993	4.2251E-05	-0.19383	-9.2025E-05	474.7724586573676	23.137	1.9821	23.214	21.884	23.866	0.076241					106	43	4	0	0	0	0.83071	2	808	808;858		37.159	0	1	2962800	+		60155	26601	42217	42280	65485;65486	65485					0.05423429085760745
PRRQAAETDAF	11	Unmodified	_PRRQAAETDAF_					0	0	0			REV__ENST00000392054.7_1_2:230127567-230135921:-|nuORF	REV__ENST00000392054.7_1_2:230127567-230135921:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7381896972656	3	421.214309	1260.6211	-0.39153	-0.00016492	0.88966	0.00037474	0.49814	0.00020982	421.2148371172161	23.372	0.23503	23.372	23.206	23.441	0					9	5	2	0	0	0	0.024734	1	906	906		41.08	16.804	1	24768	+		60156	31594	42218	42281	65487	65487					0.001212282725418845
PRRQKRGVLY	10	Unmodified	_PRRQKRGVLY_					0	0	0		ENSG00000178093|ENST00000585580|TSSK6	ENSG00000178093|ENST00000585580|TSSK6	ENSG00000178093|ENST00000585580|TSSK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.912353515625	3	424.926434	1271.75747	-0.5491	-0.00023333	1.876	0.00079717	1.3269	0.00056384	424.9275212269775	39.131	0.42207	39.131	38.935	39.357	0					16	11	2	0	0	0	0.03519	1	3313	3313		38.754	5.7142	1	177830			60157	8791	42219	42282	65488	65488					0.1324638729374783
PRRQRGGGE	9	Unmodified	_PRRQRGGGE_					0	0	0		ENST00000556011.5_1_14:73603246-73604833:+|nuORF;ENST00000553599.5_1_14:73603246-73614478:+|nuORF;ENST00000556864.5_1_14:73603246-73603898:+|nuORF	ENST00000556011.5_1_14:73603246-73604833:+|nuORF	ENST00000556011.5_1_14:73603246-73604833:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2719421386719	2	506.773388	1011.53222	-1.0021	-0.00050785	3.5727	0.0018106	2.5706	0.0013027	506.7751689873919	24.016	0.74138	23.968	23.656	24.398	-0.047148					33	16	3	0	0	0	0.024506	1	1047	1047		16.473	0	1	194630			60158	16640	42220	42283	65489	65489					0.02691857823583632
PRRRAGPAR	9	Unmodified	_PRRRAGPAR_					0	0	0		SHB|p.S61Pfs*181|1|0.29|ENSG00000107338|chr9:38068465-38068466|-/GG|frameshift_variant	SHB|p.S61Pfs*181|1|0.29|ENSG00000107338|chr9:38068465-38068466|-/GG|frameshift_variant	SHB|p.S61Pfs*181|1|0.29|ENSG00000107338|chr9:38068465-38068466|-/GG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8271484375	2	518.81539	1035.61623	-0.18426	-9.5596E-05	2.4085	0.0012496	2.2242	0.001154	518.8163874241595	34.942	0.63711	34.729	34.44	35.077	-0.21246					33	15	3	0	0	0	0.024457	1	2616	2616		37.159	0	1	287490			60159	37872	42221	42284	65490	65490					0.09984433711133534
PRRRAHSP	8	Unmodified	_PRRRAHSP_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP;EP400-SFSWAP|2|fusion;EP400-SFSWAP|1|fusion	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.78277587890625	2	488.781016	975.54748	0.38975	0.0001905	1.7541	0.00085737	2.1439	0.0010479	488.78179146163836	40.475	1.8011	40.363	39.64	41.441	-0.11222					128	49	4	0	0	0	0.91239	1	3541	3541		50.025	0	1	9956000			60160	1248	42222	42285	65491	65491					0.058727694114168116
PRRRAQEAEEA	11	Unmodified	_PRRRAQEAEEA_					0	0	0		ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2469787597656	3	438.22873	1311.66436	0.087136	3.8186E-05	2.3724	0.0010397	2.4595	0.0010778	438.22801362326646	26.7	0.25153	26.7	26.531	26.783	0					8	5	2	0	0	0	0.024747	1	1386	1386		39.873	13.123	1	42682			60161	1490	42223	42286	65492	65492					0.020994180498746573
PRRRGAREP	9	Unmodified	_PRRRGAREP_					0	0	0		ENST00000503051.1_1_4:53525618-53527100:+|nuORF	ENST00000503051.1_1_4:53525618-53527100:+|nuORF	ENST00000503051.1_1_4:53525618-53527100:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.78759765625	2	547.81813	1093.62171	-1.6186	-0.00088669	-0.60129	-0.0003294	-2.2199	-0.0012161	548.3200268564578	80.058	0.67075	79.906	79.588	80.259	-0.15169					23	15	2	0	0	0	0.024541	1	9869	9869		10.265	0	1	69050			60162	15685	42224	42287	65493	65493					0.07864112502943499
PRRRPGDP	8	Unmodified	_PRRRPGDP_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.79266357421875	2	475.767575	949.520596	-0.18492	-8.7977E-05	2.7174	0.0012929	2.5325	0.0012049	475.76864393525443	56.68	0.50864	56.516	56.201	56.71	-0.16431					21	13	2	0	0	0	0.027866	1	6257	6257		63.306	9.9548	1	342210			60163	2208	42225	42288	65494	65494					0.04381660800231657
PRRRRRWQRRP	11	Unmodified	_PRRRRRWQRRP_					0	0	0			REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF	REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.2486572265625	4	405.747716	1618.96176	0.98844	0.00040106	3.2538	0.0013202	4.2422	0.0017213	405.9997252192448	87.841	0.15144	87.806	87.731	87.882	-0.035362					5	3	2	0	0	0	0.024904	1	11037	11037		0.37141	0	1	26243	+		60164	29977	42226	42289	65495	65495					0.17703764227621832
PRRRTSSR	8	Unmodified	_PRRRTSSR_					0	0	0		ENST00000393655.3_1_6:50786629-50791321:+|nuORF	ENST00000393655.3_1_6:50786629-50791321:+|nuORF	ENST00000393655.3_1_6:50786629-50791321:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799987792969	2	508.29703	1014.57951	-0.6517	-0.00033126	-3.147	-0.0015996	-3.7987	-0.0019309	508.29525557078256	47.886	0.35835	47.952	47.87	48.228	0.066795					16	9	3	0	0	0	0.027866	1	4805	4805		25.45	8.0852	1	443760			60165	13458	42227	42290	65496	65496					0.07280137094562633
PRRRWVVRAS	10	Unmodified	_PRRRWVVRAS_					0	0	0		ENST00000417689.5_1_16:66968434-66968578:+|nuORF;ENST00000566182.1_1_16:66968434-66968817:+|nuORF	ENST00000417689.5_1_16:66968434-66968578:+|nuORF	ENST00000417689.5_1_16:66968434-66968578:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.882568359375	2	641.883804	1281.75306	0.76256	0.00048947	-2.9303	-0.0018809	-2.1678	-0.0013915	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.1267	1	12065	12065		29.15	6.5699	1	3421300			60166	13918	42228	42291	65497	65497					0.12344922870829578
PRRRYLLVSI	10	Unmodified	_PRRRYLLVSI_					0	0	0			REV__nc|ENSG00000100678|P57103-7|SLC8A3	REV__nc|ENSG00000100678|P57103-7|SLC8A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.912353515625	3	424.934818	1271.78262	-0.61394	-0.00026089	3.2691	0.0013891	2.6551	0.0011282	424.93603786770626	39.131	0.28399	39.131	38.97	39.254	0					9	7	2	0	0	0	0.03519	1	3313	3313		20.03	3.5006	1	56664	+		60167	36522	42229	42292	65498	65498					0.1576044209630254
PRRSASPERM	10	Unmodified	_PRRSASPERM_					0	0	0		ENST00000425941.6_1_2:38972277-38976074:-|nuORF;ENST00000425778.5_1_2:38972277-38976074:-|nuORF;ENST00000487773.1_1_2:38972277-38975875:-|nuORF;ENST00000431066.5_1_2:38972277-38975875:-|nuORF;ENST00000443213.5_1_2:38972277-38975875:-|nuORF;nc|ENSG00000115875|Q16629-4|SRSF7;ENSG00000115875|ENST00000313117|SRSF7;ENST00000432873.5_1_2:38972277-38974208:-|nuORF;ENST00000477635.5_1_2:38972277-38973915:-|nuORF	ENST00000425941.6_1_2:38972277-38976074:-|nuORF	ENST00000425941.6_1_2:38972277-38976074:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8091430664062	2	593.809113	1185.60367	-1.733	-0.0010291	1.441	0.00085566	-0.292	-0.00017339	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	1.0236	1	765	765		42.864	5.0528	1	2217700			60168	3497	42230	42293	65499	65499					0.01829609465903559
PRRSERAWE	9	Unmodified	_PRRSERAWE_					0	0	0			REV__nc|ENSG00000179219|Q8N616|LINC00311	REV__nc|ENSG00000179219|Q8N616|LINC00311	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	593.8091430664062	2	593.807428	1185.6003	-1.1797	-0.00070051	3.5148	0.0020871	2.3351	0.0013866	593.809614267033	21.683	0.90701	21.593	21.255	22.162	-0.090092					67	18	5	0	0	0	0.67687	1	724	724		47.657	1.7054	1	3550700	+		60169	36982	42231	42294	65500	65500					0.014926826835790052
PRRSERAWE	9	Unmodified	_PRRSERAWE_					0	0	0			REV__nc|ENSG00000179219|Q8N616|LINC00311	REV__nc|ENSG00000179219|Q8N616|LINC00311	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.80908203125	2	593.807428	1185.6003	-0.44472	-0.00026408	2.8001	0.0016627	2.3554	0.0013987	593.8091835062435	21.498	0.91965	21.569	21.156	22.075	0.071489					70	18	6	0	0	0	0.53979	1	653	653		56.721	3.7844	1	3784300	+		60170	36982	42231	42294	65501	65501					0.014926826835790052
PRRSGLPH	8	Unmodified	_PRRSGLPH_					0	0	0		ENST00000416560.5_1_7:86974515-86974694:-|nuORF	ENST00000416560.5_1_7:86974515-86974694:-|nuORF	ENST00000416560.5_1_7:86974515-86974694:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2609558105469	2	460.264668	918.514782	-0.65066	-0.00029948	-3.1592	-0.0014541	-3.8099	-0.0017536	460.2629800650599	28.235	1.3378	28.235	27.653	28.99	0					72	32	4	0	0	0	1.0009	1	1617	1617		37.159	6.6555	1	1099500			60171	13900	42232	42295	65502	65502					0.05226562288567038
PRRSLAPSL	9	Unmodified	_PRRSLAPSL_					0	0	0		ENST00000372806.7_1_20:43704391-43704694:+|nuORF	ENST00000372806.7_1_20:43704391-43704694:+|nuORF	ENST00000372806.7_1_20:43704391-43704694:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.800537109375	2	498.801083	995.587613	-0.56117	-0.00027991	-0.57298	-0.00028581	-1.1341	-0.00056572	498.8007358679737	28.693	1.0069	28.688	28.374	29.381	-0.0042019					60	24	4	0	0	0	0.4752	1	1709	1709		60.972	0	1	2801300			60172	13055	42233	42296	65503	65503					0.08964271291313253
PRRVPCAD	8	Unmodified	_PRRVPCAD_					0	0	0		ENST00000415794.1_1_3:139212742-139212994:+|nuORF	ENST00000415794.1_1_3:139212742-139212994:+|nuORF	ENST00000415794.1_1_3:139212742-139212994:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.23797607421875	2	457.237261	912.45997	-0.91004	-0.00041611	2.1213	0.00096993	1.2112	0.00055382	457.24069973029646	35.499	0.51221	35.477	35.271	35.783	-0.021763					19	12	2	0	0	0	0.027866	1	2733	2733		12.207	0	1	62559			60173	13885	42234	42297	65504	65504					0.0002380742562309024
PRRWSWIL	8	Unmodified	_PRRWSWIL_					0	0	0		nc|ENSG00000211699|P03979|TRGV3;nc|ENSG00000211697|A0A0B4J1U4|TRGV5	nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3104248046875	2	557.319443	1112.62433	0.030061	1.6754E-05	-2.3267	-0.0012967	-2.2966	-0.0012799	557.3178291329315	69.821	0.50098	69.57	69.399	69.9	-0.25063					20	11	2	0	0	0	0.027866	1	8095	8095		11.511	0	1	527710			60174	18690	42235	42298	65505	65505					0.07252567907880803
PRRYSPSRW	9	Unmodified	_PRRYSPSRW_					0	0	0			REV__ENST00000481773.1_1_3:113952355-113954212:+|nuORF	REV__ENST00000481773.1_1_3:113952355-113954212:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	601.8323364257812	2	602.820338	1203.62612	-0.45275	-0.00027293	2.0544	0.0012384	1.6017	0.00096551	602.8217589924141	72.814	0.68234	72.549	72.17	72.852	-0.26479					25	15	2	0	0	0	0.024541	1	8529	8529		3.1592	0	1	179450	+		60175	33461	42236	42299	65506	65506					0.03245576925837668
PRSAHSSSGQ	10	Unmodified	_PRSAHSSSGQ_					0	0	0			REV__RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	REV__RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7354736328125	2	507.241587	1012.46862	-0.37874	-0.00019211	3.5106	0.0017807	3.1319	0.0015886	507.2430186758243	39.462	0.68047	39.298	38.934	39.614	-0.16459					32	17	5	0	0	0	0.03519	1	3389	3389		51.193	20.689	1	1146300	+		60176	25131	42237	42300	65507	65507					-0.037115474041797825
PRSALQLAT	9	Unmodified	_PRSALQLAT_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2354431152344	2	478.779816	955.545079	0.17875	8.5581E-05	-0.36915	-0.00017674	-0.1904	-9.1159E-05	478.77950053743405	45.208	0.61604	45.208	44.862	45.478	0					31	17	2	0	0	0	0.024473	1	4346	4346		27.047	0	1	1264100	+		60177	25880	42238	42301	65508	65508					0.0655287616308442
PRSCLTPL	8	Unmodified	_PRSCLTPL_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-3|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-3|ARHGEF40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7696228027344	2	443.744388	885.474223	-0.23754	-0.00010541	-0.078813	-3.4973E-05	-0.31636	-0.00014038	443.74502800865463	20.774	0.47266	20.669	20.424	20.897	-0.10477					13	9	2	0	0	0	0.027866	1	541	541		12.207	0	1	36329	+		60178	36879	42239	42302	65509	65509					0.02690459853909033
PRSDIEMAM	9	Unmodified	_PRSDIEMAM_					0	0	0			REV__ENSG00000116039|ENST00000234396|ATP6V1B1	REV__ENSG00000116039|ENST00000234396|ATP6V1B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.7700805664062	2	525.241352	1048.46815	-0.75454	-0.00039632	-2.2484	-0.0011809	-3.0029	-0.0015772	525.2402123641049	30.425	0.45585	30.434	30.082	30.538	0.0086689					14	10	2	0	0	0	0.024541	1	1952	1952		11.511	0	1	60466	+		60179	22254	42240	42303	65510	65510					-0.0541442643989285
PRSEGPLHA	9	Unmodified	_PRSEGPLHA_					0	0	0			REV__ENST00000541775.5_1_12:7260931-7262661:+|nuORF	REV__ENST00000541775.5_1_12:7260931-7262661:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2544860839844	2	482.253966	962.493378	-0.064952	-3.1323E-05	1.3474	0.00064978	1.2824	0.00061845	482.254554327035	30.848	1.3171	30.607	30.248	31.565	-0.24109					52	32	2	0	0	0	0.64155	1	2008	2008		50.025	2.1089	1	2619200	+		60180	34690	42241	42304	65511	65511					0.010631324691871669
PRSERRICL	9	Unmodified	_PRSERRICL_					0	0	0		ENST00000380008.1_1_21:47251066-47256320:-|nuORF	ENST00000380008.1_1_21:47251066-47256320:-|nuORF	ENST00000380008.1_1_21:47251066-47256320:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.3352661132812	2	565.316574	1128.6186	0.19856	0.00011225	-0.21928	-0.00012396	-0.020721	-1.1714E-05	565.3166007171278	17.502	0.22351	17.359	17.229	17.453	-0.14278					6	4	2	0	0	0	1.0233	1	158	158		15.642	1.5047	1	15956			60181	13295	42242	42305	65512	65512					0.05943101333900813
PRSHFTTY	8	Unmodified	_PRSHFTTY_					0	0	0			REV__nc|ENSG00000205277|Q9UKN1|MUC12	REV__nc|ENSG00000205277|Q9UKN1|MUC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7650451660156	2	504.748516	1007.48248	-1.0885	-0.00054941	-2.3692	-0.0011958	-3.4577	-0.0017453	504.7469568362435	20.973	0.49147	20.973	20.753	21.244	0					16	9	2	0	0	0	0.027866	1	589	589		24.203	0	1	28284	+		60182	28668	42243	42306	65513	65513					-0.020962699050983247
PRSHKAAS	8	Unmodified	_PRSHKAAS_					0	0	0			REV__ENST00000393562.6_1_X:153759983-153760211:-|nuORF	REV__ENST00000393562.6_1_X:153759983-153760211:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2538757324219	2	427.235576	852.456599	-0.65627	-0.00028038	-0.27941	-0.00011938	-0.93568	-0.00039976	427.23597782707134	23.563	0.20996	23.563	23.441	23.651	0					6	4	2	0	0	0	0.027866	1	929	929		23.042	0	1	31107	+		60183	31648	42244	42307	65514	65514					0.024468806432764723
PRSKEGSDY	9	Unmodified	_PRSKEGSDY_					0	0	0		TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.79833984375	2	519.74617	1037.47779	-0.54767	-0.00028465	3.1751	0.0016502	2.6274	0.0013656	519.747739915507	30.757	3.0475	30.769	29.212	32.26	0.011797					134	74	2	0	0	0	0.024436	1	1984	1984		30.504	1.3541	1	422840			60184	5884	42245	42308	65515	65515					-0.039451988385280856
PRSLDKKID	9	Unmodified	_PRSLDKKID_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3109741210938	2	536.31148	1070.60841	-0.77225	-0.00041417	0.86754	0.00046527	0.095293	5.1107E-05	536.3119727707362	97.164	1.1655	97.003	96.595	97.76	-0.16105					58	25	4	0	0	0	0.97455	1	12024	12024		25.574	0	1	651160	+		60185	19912	42246	42309	65516	65516					0.07592816880332975
PRSLEQLRS	9	Unmodified	_PRSLEQLRS_					0	0	0			REV__ENST00000427191.6_1_4:87515546-87515657:+|nuORF	REV__ENST00000427191.6_1_4:87515546-87515657:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2902221679688	2	543.306729	1084.59891	-0.69715	-0.00037877	3.7004	0.0020105	3.0033	0.0016317	543.3077772760388	48.398	0.1764	48.212	48.121	48.298	-0.18684					7	4	2	0	0	0	0.024427	1	4791	4791		34.173	3.8548	1	140830	+		60186	32289	42247	42310	65517	65517					0.059990485947992056
PRSLPPGSSL	10	Unmodified	_PRSLPPGSSL_					0	0	0			REV__ENSG00000172716|ENST00000685675|SLFN11	REV__ENSG00000172716|ENST00000685675|SLFN11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.78961181640625	2	505.785099	1009.55564	-0.41906	-0.00021196	0.065808	3.3285E-05	-0.35325	-0.00017867	505.7851199612441	46.881	1.2775	46.728	45.918	47.196	-0.15301					74	34	4	0	0	0	0.52765	1	4646	4646		85.161	14.345	1	3024600	+		60187	26698	42248	42311	65518	65518					0.051248588175326404
PRSLPTRLQVL	11	Unmodified	_PRSLPTRLQVL_					0	0	0		ENST00000409997.1_1_2:99224863-99224977:-|nuORF	ENST00000409997.1_1_2:99224863-99224977:-|nuORF	ENST00000409997.1_1_2:99224863-99224977:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.302734375	3	427.266345	1278.7772	0.11285	4.8218E-05	1.7286	0.00073857	1.8414	0.00078679	427.26868529029184	64.194	0.20276	63.966	63.825	64.027	-0.22773					5	4	2	0	0	0	0.024789	1	7265	7265		15.921	4.2847	1	25522			60188	13800	42249	42312	65519	65519					0.14896718513841734
PRSNISSGGSL	11	Unmodified	_PRSNISSGGSL_					0	0	0		SYT16|p.P483L|1|0.19|ENSG00000139973|chr14:62084209-62084209|C/T|missense_variant	SYT16|p.P483L|1|0.19|ENSG00000139973|chr14:62084209-62084209|C/T|missense_variant	SYT16|p.P483L|1|0.19|ENSG00000139973|chr14:62084209-62084209|C/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-3	3	537.780517578125	2	537.780544	1073.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.532	1	35.576	35.076	36.076	0.04406								0	0	0	1.2149	1	2688	2688		84.817	15.971	1				60189	38051	42250	42313	65520	65520					0.012704654611980004
PRSPPILLS	9	Unmodified	_PRSPPILLS_					0	0	0			REV__ENST00000592808.1_1_19:12885462-12885621:-|nuORF	REV__ENST00000592808.1_1_19:12885462-12885621:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2532043457031	2	490.300384	978.586216	0.093081	4.5637E-05	3.1727	0.0015556	3.2658	0.0016012	490.30251619073175	42.926	0.21618	42.957	42.865	43.082	0.030827					6	5	2	0	0	0	0.024374	1	3946	3946		58.782	2.0609	1	63596	+		60190	35754	42251	42314	65521	65521					0.0960663720258026
PRSRGLLRSVS	11	Unmodified	_PRSRGLLRSVS_					0	0	0			REV__ENST00000550009.1_1_12:120875908-120876378:+|nuORF	REV__ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.9155578613281	3	409.914194	1226.72075	0.52808	0.00021647	2.6981	0.001106	3.2262	0.0013224	409.9152633306445	32.131	1.0561	31.938	31.641	32.697	-0.19261					65	24	5	0	0	0	1.0371	1	2209	2209		28.577	3.0027	1	927910	+		60191	21944	42252	42315	65522	65522					0.11646090677186294
PRSRLSFPK	9	Unmodified	_PRSRLSFPK_					0	0	0		ENST00000328916.7_1_12:7167858-7168176:+|nuORF	ENST00000328916.7_1_12:7167858-7168176:+|nuORF	ENST00000328916.7_1_12:7167858-7168176:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2677001953125	2	544.322183	1086.62981	-0.46533	-0.00025329	2.8991	0.001578	2.4337	0.0013247	544.3237499056293	35.773	0.23229	35.574	35.476	35.708	-0.19829					9	6	2	0	0	0	0.023817	1	2715	2715		42.396	10.866	1	146730			60192	12311	42253	42316	65523	65523					0.08996246699712174
PRSSLQLVKTH	11	Unmodified	_PRSSLQLVKTH_					0	0	0		ENST00000603865.1_1_11:75507249-75507624:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3688354492188	2	633.369861	1264.72517	-0.72902	-0.00046174	-0.15881	-0.00010058	-0.88782	-0.00056232	633.3696693959632	105.84	0.55228	105.72	105.4	105.95	-0.12444					29	17	3	0	0	0	1.0655	1	13179	13179		20.837	0.84038	1	166410			60193	17544	42254	42317	65524	65524					0.10339555100085818
PRSVSTVPR	9	Unmodified	_PRSVSTVPR_					0	0	0		ENST00000381496.7_1_10:321690-321876:-|nuORF	ENST00000381496.7_1_10:321690-321876:-|nuORF	ENST00000381496.7_1_10:321690-321876:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7900695800781	2	499.790715	997.566878	-1.1573	-0.00057842	1.3785	0.00068897	0.2212	0.00011055	499.79096174757564	29.52	1.3112	29.52	29.073	30.384	0					53	32	4	0	0	0	0.85329	1	1824	1824		35.618	0	1	1610000			60194	13344	42255	42318	65525	65525					0.06799680911672112
PRSYPHSL	8	Unmodified	_PRSYPHSL_					0	0	0			REV__ENSG00000174279|ENST00000308618|EVX2	REV__ENSG00000174279|ENST00000308618|EVX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7520751953125	2	478.751059	955.487565	-0.35702	-0.00017092	3.2301	0.0015464	2.8731	0.0013755	478.75263780541945	33.354	0.94904	33.361	32.738	33.687	0.0066223					82	25	4	0	0	0	0.6536	1	2361	2361		71.296	5.4925	1	13074000	+		60195	26849	42256	42319	65526	65526					0.008040339575131839
PRTAASSLALV	11	Unmodified	_PRTAASSLALV_					0	0	0		ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	ENSG00000186912|ENST00000374519|P2RY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7954711914062	2	543.319306	1084.62406	-1.6253	-0.00088307	0.40476	0.00021991	-1.2206	-0.00066316	543.3199031381519	39.571	0.83077	39.472	39.199	40.03	-0.098755					40	22	2	0	0	0	0.024762	1	3489	3489		54.776	12.38	1	1447600			60196	9593	42257	42320	65527	65527					0.08513103397353916
PRTAGPLPR	9	Unmodified	_PRTAGPLPR_					0	0	0			REV__ENST00000564218.5_1_16:31448362-31454203:-|nuORF	REV__ENST00000564218.5_1_16:31448362-31454203:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7874755859375	2	482.787976	963.561398	1.3074	0.00063117	-1.4743	-0.00071177	-0.16693	-8.0593E-05	482.7871420382854	20.171	0.78598	20.24	19.924	20.71	0.068901					29	15	3	0	0	0	0.67687	1	469	469		47.657	5.2612	1	150000	+		60197	35242	42258	42321	65528	65528					0.07816002119841414
PRTALGSTV	9	Unmodified	_PRTALGSTV_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2591247558594	2	451.258717	900.50288	3.7799	0.0017057	-2.3529	-0.0010618	1.427	0.00064393	451.2574380523968	17.077	0.2548	17.077	16.946	17.201	0					9	5	2	0	0	0	0.87448	1	127	127		34.173	5.023	1	37561	+		60198	20736	42259	42322	65529	65529					0.04864900754728296
PRTALGSTV	9	Unmodified	_PRTALGSTV_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	451.258717	900.50288	3.7799	0.0017057	-2.3529	-0.0010618	1.427	0.00064393	451.2574380523968	17.077	0.2548	17.077	16.946	17.201	0	0.011338	-0.0020701	NaN	34.173	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37561	+		60199	20736	42259	42322							0.04864900754728296
PRTALGSTV	9	Unmodified	_PRTALGSTV_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.258717	900.50288	0.65944	0.00029758	0.86641	0.00039098	1.5259	0.00068855	451.2590528423128	17.198	0.23873	17.055	16.895	17.134	-0.14278	-0.011338	0.00083546	NaN	34.173	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28136	+		60200	20736	42259	42322							0.04864900754728296
PRTFCQLI	8	Unmodified	_PRTFCQLI_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.26593017578125	2	489.265487	976.516422	0.10189	4.9851E-05	-1.1023	-0.0005393	-1.0004	-0.00048945	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.68535	1	6003	6003		68.485	2.6815	1	81379000			60201	7717	42260	42323	65530	65530					0.02722435262307954
PRTFFLGCVF	10	Unmodified	_PRTFFLGCVF_					0	0	0			REV__ENSG00000063127|ENST00000335875|SLC6A16	REV__ENSG00000063127|ENST00000335875|SLC6A16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.80908203125	2	593.807519	1185.60049	-1.733	-0.0010291	4.1253	0.0024496	2.3923	0.0014206	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	1.0719	1	786	786		36.447	2.2742	1	2217700	+		60202	20269	42261	42324	65531	65531					0.015109663591829303
PRTFLSRVLPP	11	Unmodified	_PRTFLSRVLPP_					0	0	0		ENST00000432148.5_1_9:71160720-71160887:-|nuORF	ENST00000432148.5_1_9:71160720-71160887:-|nuORF	ENST00000432148.5_1_9:71160720-71160887:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8829345703125	2	641.885147	1281.75574	-2.5036	-0.001607	-1.8686	-0.0011994	-4.3722	-0.0028064	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.0557	1	11678	11678		23.523	3.5259	1	1400600			60203	14196	42262	42325	65532	65532					0.12613333485114708
PRTFLSRVLPP	11	Unmodified	_PRTFLSRVLPP_					0	0	0		ENST00000432148.5_1_9:71160720-71160887:-|nuORF	ENST00000432148.5_1_9:71160720-71160887:-|nuORF	ENST00000432148.5_1_9:71160720-71160887:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8823852539062	2	641.885147	1281.75574	-0.57436	-0.00036868	-3.7858	-0.00243	-4.3602	-0.0027987	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0238	1	11644	11644		31.53	2.3598	1	1351900			60204	14196	42262	42325	65533	65533					0.12613333485114708
PRTFQNIA	8	Unmodified	_PRTFQNIA_					0	0	0			REV__ENST00000480271.1_1_11:7805306-7805588:+|nuORF	REV__ENST00000480271.1_1_11:7805306-7805588:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2702331542969	2	473.758884	945.503215	0.58716	0.00027817	-3.6589	-0.0017334	-3.0717	-0.0014552	473.75673416498637	25.126	0.24387	25.206	25.05	25.294	0.080088					7	5	2	0	0	0	0.027866	1	1087	1087		33.516	6.7195	1	86870	+		60205	33418	42263	42326	65534	65534					0.02828320474566226
PRTGKFRIP	9	Unmodified	_PRTGKFRIP_					0	0	0		nc|ENSG00000138722|Q13201-2|MMRN1;ENSG00000138722|ENST00000264790|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.311279296875	2	536.324725	1070.6349	-1.5225	-0.00081656	3.9533	0.0021202	2.4308	0.0013037	536.3269089935613	34.334	0.1126	34.384	34.292	34.404	0.050255					4	2	2	0	0	0	0.024541	1	2496	2496		17.365	0.89182	1	39864			60206	5272	42264	42327	65535	65535					0.10240550562321005
PRTGPPRL	8	Unmodified	_PRTGPPRL_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2352294921875	2	447.269419	892.524284	-0.24725	-0.00011059	-0.14616	-6.5373E-05	-0.39341	-0.00017596	447.2694820304367	26.439	0.53006	26.416	26.164	26.694	-0.023088					23	12	3	0	0	0	0.027866	1	1357	1357		53.351	0	1	172900			60207	9566	42265	42328	65536	65536					0.07372330574082753
PRTLAGITA	9	Unmodified	_PRTLAGITA_					0	0	0		nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000152990|Q8IWK6-4|ADGRA3;nc|ENSG00000152990|Q8IWK6-2|ADGRA3;ENST00000591780.1_1_18:12075195-12075588:-|nuORF;nc|ENSG00000152990|Q8IWK6-3|ADGRA3;ENSG00000152990|ENST00000334304|ADGRA3	nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENST00000591780.1_1_18:12075195-12075588:-|nuORF;nc|ENSG00000152990|Q8IWK6-3|ADGRA3	nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2686767578125	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.5973	1	3136	3136		52.937	1.6012	1	125590000			60208	954;17361;6311	42266	42329	65537	65537					0.07029491134369437
PRTLALPL	8	Unmodified	_PRTLALPL_					0	0	0		ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.76123046875	2	440.78437	879.554188	-0.37461	-0.00016512	0.76377	0.00033666	0.38916	0.00017154	440.784519729688	38.986	0.46169	38.887	38.665	39.127	-0.098751					22	12	2	0	0	0	0.027866	1	3268	3268		47.916	5.4411	1	263250			60209	12878	42267	42330	65538	65538					0.10959269519412373
PRTLALPL	8	Unmodified	_PRTLALPL_					0	0	0		ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7611083984375	2	440.78437	879.554188	-0.67717	-0.00029849	1.0366	0.00045693	0.35946	0.00015845	440.7846121679714	39.167	0.49896	39.191	38.956	39.455	0.023727					25	13	3	0	0	0	0.027866	1	3252	3252		38.806	1.647	1	271650			60210	12878	42267	42330	65539	65539					0.10959269519412373
PRTPAPPVS	9	Unmodified	_PRTPAPPVS_					0	0	0			REV__ENSG00000142945|ENST00000372224|KIF2C	REV__ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.2607727050781	2	461.261259	920.507966	-0.21412	-9.8763E-05	0.16545	7.6316E-05	-0.048666	-2.2448E-05	461.26122148638075	29.258	0.67506	29.109	28.826	29.501	-0.14952					25	15	2	0	0	0	0.31247	1	1751	1751		73.975	13.003	1	926460	+		60211	24187	42268	42331	65540	65540					0.0445320461733445
PRTPAPPVS	9	Unmodified	_PRTPAPPVS_					0	0	0			REV__ENSG00000142945|ENST00000372224|KIF2C	REV__ENSG00000142945|ENST00000372224|KIF2C	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	461.261259	920.507966	-0.21412	-9.8763E-05	0.16545	7.6316E-05	-0.048666	-2.2448E-05	461.26122148638075	29.258	0.67506	29.109	28.826	29.501	-0.14952	0.0021201	-0.00029452	NaN	73.975	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	926460	+		60212	24187	42268	42331							0.0445320461733445
PRTPPGVFLS	10	Unmodified	_PRTPPGVFLS_					0	0	0			REV__ENST00000574632.5_1_17:1057298-1057364:-|nuORF	REV__ENST00000574632.5_1_17:1057298-1057364:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.80029296875	2	535.803291	1069.59203	-0.54433	-0.00029165	-4.2545	-0.0022796	-4.7988	-0.0025712	535.8006817096492	55.374	1.0182	55.143	54.565	55.583	-0.23087					70	28	4	0	0	0	0.69662	1	5935	5935		67.494	7.1997	1	5697600	+		60213	35448	42269	42332	65541	65541					0.06001735714221468
PRTPRLTPL	9	Unmodified	_PRTPRLTPL_					0	0	0			REV__ENST00000589123.5_2_19:3453803-3456595:+|nuORF	REV__ENST00000589123.5_2_19:3453803-3456595:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7330322265625	2	525.824558	1049.63456	-1.6966	-0.0008921	0.90495	0.00047584	-0.79162	-0.00041625	525.824845888638	43.853	0.43092	43.853	43.658	44.089	0					22	11	3	0	0	0	0.024367	1	4145	4145		44.377	8.7589	1	337290	+		60214	35665	42270	42333	65542	65542					0.11173130842439605
PRTQAHSGSP	10	Unmodified	_PRTQAHSGSP_					0	0	0		ENSG00000105559|ENST00000263265|PLEKHA4	ENSG00000105559|ENST00000263265|PLEKHA4	ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.823974609375	2	519.259779	1036.50501	0.037271	1.9353E-05	3.2505	0.0016879	3.2878	0.0017072	519.2614849936538	81.254	1.5044	81.025	80.617	82.121	-0.2289					60	35	3	0	0	0	0.03519	1	9785	9785		54.722	0	1	508400			60215	2692	42271	42334	65543	65543					-0.011786705074882775
PRTRERER	8	Unmodified	_PRTRERER_					0	0	0			REV__ENST00000447706.6_1_1:200635874-200639000:-|nuORF	REV__ENST00000447706.6_1_1:200635874-200639000:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2999877929688	2	550.307595	1098.60064	-0.41553	-0.00022867	-3.3995	-0.0018708	-3.8151	-0.0020995	550.3056200307594	26.594	0.66788	26.594	26.283	26.951	0					22	15	2	0	0	0	0.027866	1	1344	1344		57.811	20.652	1	66388	+		60216	32653	42272	42335	65544	65544					0.05528102403400226
PRTRERER	8	Unmodified	_PRTRERER_					0	0	0			REV__ENST00000447706.6_1_1:200635874-200639000:-|nuORF	REV__ENST00000447706.6_1_1:200635874-200639000:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2996826171875	2	550.307595	1098.60064	-0.85311	-0.00046947	-2.9893	-0.0016451	-3.8424	-0.0021145	550.3060344100564	26.42	0.66877	26.501	26.131	26.799	0.081293					21	15	2	0	0	0	0.027866	1	1260	1260		55.504	31.301	1	72185	+		60217	32653	42272	42335	65545	65545					0.05528102403400226
PRTRKQII	8	Unmodified	_PRTRKQII_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF;ENST00000555808.1_1_12:56815681-56815917:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2921447753906	2	506.324725	1010.6349	-0.6007	-0.00030415	0.36087	0.00018272	-0.23983	-0.00012143	506.3247472401527	21.641	0.67133	21.712	21.451	22.122	0.071487					35	13	3	0	0	0	0.027866	1	618	618		23.042	0	1	112280			60218	3124	42273	42336	65546	65546					0.13000550562321678
PRTRSVGM	8	Unmodified	_PRTRSVGM_					0	0	0		ENST00000520584.5_1_8:144329158-144329458:+|nuORF	ENST00000520584.5_1_8:144329158-144329458:+|nuORF	ENST00000520584.5_1_8:144329158-144329458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.24542236328125	2	452.245086	902.47562	-0.22596	-0.00010219	0.4021	0.00018185	0.17614	7.9657E-05	452.24517282372113	20.153	0.39389	20.153	19.88	20.274	0					20	7	4	0	0	0	1.0572	1	506	506		28.254	2.8041	1	272260			60219	15985	42274	42337	65547	65547					0.02048093942687501
PRTSEIPIF	9	Unmodified	_PRTSEIPIF_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2986450195312	2	530.295299	1058.57605	2.5603	0.0013577	3.3724	0.0017884	5.9326	0.0031461	530.2971861809157	18.015	1.4728	18.015	17.548	19.021	0					66	29	5	0	0	0	0.39228	1	239	239		66.429	2.8954	1	4024600			60220	8860	42275	42338	65548	65548					0.04910029477309763
PRTSQQVR	8	Unmodified	_PRTSQQVR_					0	0	0			REV__SLC25A2|p.R275Cfs*70|1|0.27|ENSG00000120329|chr5:141303033-141303043|GGGATTGCTCG/-|frameshift_variant	REV__SLC25A2|p.R275Cfs*70|1|0.27|ENSG00000120329|chr5:141303033-141303043|GGGATTGCTCG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29132080078125	2	486.27269	970.530826	0.65655	0.00031926	2.5001	0.0012157	3.1566	0.001535	486.2738688609265	59.61	0.80235	59.41	59.063	59.866	-0.20016					45	21	3	0	0	0	0.027866	1	6840	6840		66.429	27.623	1	1985000	+		60221	37498	42276	42339	65549	65549					0.044382237348031595
PRTTPRKK	8	Unmodified	_PRTTPRKK_					0	0	0		nc|ENSG00000155275|Q8IYL2-3|TRMT44;ENST00000532477.1_1_4:8456189-8477725:+|nuORF;ENSG00000155275|ENST00000389737|TRMT44	nc|ENSG00000155275|Q8IYL2-3|TRMT44	nc|ENSG00000155275|Q8IYL2-3|TRMT44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7968444824219	2	492.309075	982.603597	0.82812	0.00040769	3.8964	0.0019182	4.7245	0.0023259	492.31160701454746	97.213	1.1075	97.213	96.44	97.548	-3.0518E-05					43	24	3	0	0	0	0.027866	1	12367	12367		27.882	3.6795	1	134790			60222	6465	42277	42340	65550	65550					0.11159977528222953
PRTWGGPE	8	Unmodified	_PRTWGGPE_					0	0	0		nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.91644287109375	2	450.222134	898.429715	-0.14099	-6.3475E-05	4.132	0.0018603	3.991	0.0017968	450.22384124508926	23.62	3.5535	23.696	21.737	25.29	0.076241					167	78	3	0	0	0	0.027866	1	996	996		53.351	28.847	1	772290			60223	18779	42278	42341	65551	65551					-0.023562279679026688
PRVAAKTH	8	Unmodified	_PRVAAKTH_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.2616882324219	2	440.261594	878.508634	2.2659	0.0009976	-2.0106	-0.00088521	0.25528	0.00011239	440.2606120683346	19.74	1.2191	19.806	19.488	20.707	0.066195					64	24	4	0	0	0	0.74904	1	401	401		63.306	2.3343	1	1083900			60224	4718	42279	42342	65552	65552					0.06452044057027706
PRVAQTRASR	10	Unmodified	_PRVAQTRASR_					0	0	0		ENST00000252818.4_1_19:18390620-18391193:-|nuORF	ENST00000252818.4_1_19:18390620-18391193:-|nuORF	ENST00000252818.4_1_19:18390620-18391193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.3351440429688	2	571.33107	1140.64759	0.16501	9.4278E-05	0.088944	5.0816E-05	0.25396	0.00014509	571.3310014080151	101.29	0.71938	101.12	100.8	101.52	-0.17178					35	15	4	0	0	0	1.118	1	12583	12583		30.318	2.2362	1	338220			60225	11362	42280	42343	65553	65553					0.0828896195453126
PRVASKKN	8	Unmodified	_PRVASKKN_					0	0	0			REV__nc|ENSG00000185787|Q9UBU8|MORF4L1	REV__nc|ENSG00000185787|Q9UBU8|MORF4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2743835449219	2	450.274701	898.534849	-0.35559	-0.00016011	-0.72196	-0.00032508	-1.0775	-0.00048519	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	1.0009	1	11764	11764		37.159	5.2042	1	67958000	+		60226	37019	42281	42344	65554	65554					0.08152313228515595
PRVASKKN	8	Unmodified	_PRVASKKN_					0	0	0			REV__nc|ENSG00000185787|Q9UBU8|MORF4L1	REV__nc|ENSG00000185787|Q9UBU8|MORF4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2743225097656	2	450.274701	898.534849	0.37578	0.0001692	-1.4515	-0.00065358	-1.0757	-0.00048437	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	1.0574	1	11590	11590		24.203	0	1	69580000	+		60227	37019	42281	42344	65555	65555					0.08152313228515595
PRVGVRRPSL	10	Unmodified	_PRVGVRRPSL_					0	0	0		nc|ENSG00000003137|Q9NR63-3|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	nc|ENSG00000003137|Q9NR63-3|CYP26B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8530883789062	2	568.854181	1135.69381	-0.66068	-0.00037583	-0.97761	-0.00055612	-1.6383	-0.00093195	568.8534924489414	101.15	1.6136	101.15	100.78	102.39	0					120	36	5	0	0	0	1.0616	1	12967	12967		37.812	1.3648	1	8405100			60228	18026	42282	42345	65556	65556					0.1313902685665198
PRVIAVPQV	9	Unmodified	_PRVIAVPQV_					0	0	0			REV__SAXO2|p.G75Efs*35|1|0.23|ENSG00000188659|chr15:82271766-82271766|A/-|frameshift_variant	REV__SAXO2|p.G75Efs*35|1|0.23|ENSG00000188659|chr15:82271766-82271766|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.26580810546875	2	489.808377	977.6022	-0.68155	-0.00033383	-0.28959	-0.00014184	-0.97114	-0.00047567	489.80794827452144	55.646	0.54739	55.43	55.268	55.815	-0.21551					18	14	2	0	0	0	0.024381	1	5979	5979		29.15	0	1	139100	+		60229	28051	42283	42346	65557	65557					0.11250343439473909
PRVIMASPL	9	Unmodified	_PRVIMASPL_					0	0	0			REV__nc|ENSG00000153391|Q6PI98-4|INO80C	REV__nc|ENSG00000153391|Q6PI98-4|INO80C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.27264404296875	2	492.288963	982.563372	-0.25674	-0.00012639	3.3471	0.0016477	3.0903	0.0015213	492.29094071192304	23.657	0.29994	23.657	23.566	23.866	0					11	6	3	0	0	0	0.024457	1	972	972		37.159	15.199	1	55638	+		60230	36795	42284	42347	65558	65558					0.07139294813441666
PRVKATKAYYL	11	Unmodified	_PRVKATKAYYL_					0	0	0			REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2569274902344	3	437.259079	1308.75541	-0.049713	-2.1737E-05	-3.7002	-0.0016179	-3.7499	-0.0016397	437.2574626155363	95.685	2.2253	95.548	94.254	96.479	-0.13689					148	51	3	0	0	0	1.0123	1	11813	11813		34.087	5.5098	1	454870	+		60231	33674	42285	42348	65559	65559					0.1133791376530553
PRVKATKAYYL	11	Unmodified	_PRVKATKAYYL_					0	0	0			REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	437.259079	1308.75541	0.068797	3.0082E-05	-3.8413	-0.0016796	-3.7725	-0.0016496	437.257422328892	95.644	2.1961	95.644	94.244	96.44	0	0.073553	0.00027733	NaN	34.087	129	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424200	+		60232	33674	42285	42348							0.1133791376530553
PRVKATKAYYL	11	Unmodified	_PRVKATKAYYL_					0	0	0			REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	437.259079	1308.75541	0.45898	0.00020069	-4.169	-0.0018229	-3.71	-0.0016222	437.25723491001355	95.57	2.1268	95.574	94.31	96.437	0.0033722	0.0026503	-0.00015256	NaN	34.087	131	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426860	+		60233	33674	42285	42348							0.1133791376530553
PRVKATKAYYL	11	Unmodified	_PRVKATKAYYL_					0	0	0			REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	437.259079	1308.75541	0.83221	0.00036389	-4.4788	-0.0019584	-3.6466	-0.0015945	437.2571932125785	95.656	2.2091	95.658	94.321	96.53	0.0020676	0.087466	-0.00055896	NaN	34.087	119	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434810	+		60234	33674	42285	42348							0.1133791376530553
PRVKATKAYYL	11	Unmodified	_PRVKATKAYYL_					0	0	0			REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	437.259079	1308.75541	0.65841	0.0002879	-4.2667	-0.0018657	-3.6083	-0.0015778	437.2572333778059	95.546	2.1374	95.424	94.259	96.396	-0.12251	-0.14704	-0.00028078	NaN	34.087	102	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349580	+		60235	33674	42285	42348							0.1133791376530553
PRVKATKAYYL	11	Unmodified	_PRVKATKAYYL_					0	0	0			REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	REV__ENST00000489613.1_1_2:234294779-234297133:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	437.259079	1308.75541	0.16506	7.2173E-05	-3.8666	-0.0016907	-3.7015	-0.0016185	437.2574121735408	95.731	2.1503	95.577	94.363	96.513	-0.15396	0.00581	0.00024411	NaN	34.087	124	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406300	+		60236	33674	42285	42348							0.1133791376530553
PRVLNGNP	8	Unmodified	_PRVLNGNP_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.54840087890625	2	433.745776	865.477	-0.34986	-0.00015175	0.76265	0.0003308	0.41279	0.00017905	433.7459514191264	24.694	0.66472	24.694	24.429	25.094	0					33	14	3	0	0	0	0.027866	1	1070	1070		35.201	0	1	82250			60237	1175	42286	42349	65560	65560					0.038880513030903785
PRVLRERE	8	Unmodified	_PRVLRERE_					0	0	0		ENST00000305123.5_1_2:227663257-227663680:-|nuORF	ENST00000305123.5_1_2:227663257-227663680:-|nuORF	ENST00000305123.5_1_2:227663257-227663680:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7671508789062	2	527.809439	1053.60433	-0.73327	-0.00038703	-1.6277	-0.00085909	-2.3609	-0.0012461	527.8094296290478	29.564	0.51461	29.642	29.368	29.883	0.078344					27	12	4	0	0	0	0.027866	1	1759	1759		37.159	18.835	1	218760			60238	11985	42287	42350	65561	65561					0.07966772177269377
PRVPFVLH	8	Unmodified	_PRVPFVLH_					0	0	0		ENST00000444434.1_1_7:25219397-25219645:-|nuORF	ENST00000444434.1_1_7:25219397-25219645:-|nuORF	ENST00000444434.1_1_7:25219397-25219645:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.78790283203125	2	482.789987	963.565421	-0.99297	-0.0004794	-3.0533	-0.0014741	-4.0462	-0.0019535	482.78831543522085	29.563	0.68091	29.641	29.368	30.049	0.078344					38	16	4	0	0	0	0.82104	1	1783	1783		57.453	25.874	1	747940			60239	14421	42288	42351	65562	65562					0.08218091613559864
PRVPRSAST	9	Unmodified	_PRVPRSAST_					0	0	0		ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7751770019531	2	485.775065	969.535577	-0.83238	-0.00040435	1.4992	0.00072829	0.66684	0.00032393	485.77571877021416	25.69	0.58852	25.69	25.324	25.912	0					38	13	4	0	0	0	0.67308	2	1241	1241;1253		47.916	5.5195	1	2746000			60240	7491	42289	42352	65563;65564	65563					0.04959107877573388
PRVPRSAST	9	Unmodified	_PRVPRSAST_					0	0	0		ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7752380371094	2	485.775065	969.535577	-0.71828	-0.00034892	3.6401	0.0017682	2.9218	0.0014193	485.77750079398936	25.713	1.042	25.679	25.351	26.393	-0.034395					51	24	4	0	0	0	0.83071	1	1239	1239		37.159	6.6555	1	2338700			60241	7491	42289	42352	65565	65565					0.04959107877573388
PRVPRSAST	9	Unmodified	_PRVPRSAST_					0	0	0		ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7755432128906	2	485.775065	969.535577	-0.18912	-9.1872E-05	0.89539	0.00043496	0.70627	0.00034309	485.7754400517033	25.562	0.49736	25.642	25.294	25.792	0.08009					37	11	4	0	0	0	0.75397	1	1181	1181		42.396	4.5846	1	2703000			60242	7491	42289	42352	65566	65566					0.04959107877573388
PRVPVLLAR	9	Unmodified	_PRVPVLLAR_					0	0	0			REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.83770751953125	2	510.837468	1019.66038	-0.30402	-0.00015531	0.11834	6.045E-05	-0.18569	-9.4855E-05	510.8373694494273	45.91	0.65968	45.91	45.613	46.273	0					53	18	4	0	0	0	0.6504	1	4502	4502		49.442	3.4896	1	2809200	+		60243	29584	42290	42353	65567	65567					0.15134025084751102
PRVPVLLAR	9	Unmodified	_PRVPVLLAR_					0	0	0			REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.8367919921875	2	510.837468	1019.66038	-0.93963	-0.00048	0.74882	0.00038253	-0.19081	-9.7475E-05	510.8377056702391	45.972	0.66499	45.82	45.544	46.209	-0.15157					57	18	4	0	0	0	0.50848	1	4492	4492		58.782	12.83	1	2492200	+		60244	29584	42290	42353	65568	65568					0.15134025084751102
PRVPVLLAR	9	Unmodified	_PRVPVLLAR_					0	0	0			REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.8373718261719	2	510.837468	1019.66038	-0.3947	-0.00020163	0.36616	0.00018705	-0.028541	-1.458E-05	510.8374813166352	45.882	0.65356	45.93	45.651	46.305	0.047943					53	18	4	0	0	0	0.62163	1	4429	4429		51.335	12.529	1	2344100	+		60245	29584	42290	42353	65569	65569					0.15134025084751102
PRVRVEALQ	9	Unmodified	_PRVRVEALQ_					0	0	0		nc|ENSG00000244005|Q9Y697-3|NFS1;nc|ENSG00000244005|Q9Y697-2|NFS1;ENSG00000244005|ENST00000374092|NFS1;ENST00000480655.5_1_20:34262894-34263203:-|nuORF	nc|ENSG00000244005|Q9Y697-3|NFS1;ENST00000480655.5_1_20:34262894-34263203:-|nuORF	nc|ENSG00000244005|Q9Y697-3|NFS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.3193969726562	2	534.31964	1066.62473	2.1509	0.0011492	-2.4822	-0.0013263	-0.3313	-0.00017702	534.3182353459338	19.447	0.78508	19.513	19.044	19.829	0.066195					31	15	3	0	0	0	0.72494	1	368	368		44.377	5.1244	1	125120			60246	18763;15207	42291	42354	65570	65570					0.09407942837083283
PRVRVSLL	8	Unmodified	_PRVRVSLL_					0	0	0			REV__ENST00000561173.5_1_1:197885422-197885647:+|nuORF	REV__ENST00000561173.5_1_1:197885422-197885647:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.7821350097656	2	470.308544	938.602535	1.8331	0.00086212	-1.6507	-0.00077633	0.18239	8.578E-05	470.3076410220084	19.073	0.39492	18.84	18.632	19.027	-0.23345					11	7	2	0	0	0	0.027866	1	347	347		19.36	1.0356	1	32762	+		60247	35167	42292	42355	65571	65571					0.13077763159321876
PRVSLSPKAR	10	Unmodified	_PRVSLSPKAR_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.799560546875	2	555.840739	1109.66693	0.26997	0.00015006	-1.2371	-0.00068764	-0.96715	-0.00053758	555.8401898308549	40.688	0.56293	40.688	40.381	40.944	0					18	15	2	0	0	0	0.03519	1	3629	3629		45.972	0	1	353020			60248	2648	42293	42356	65572	65572					0.11647918245444089
PRVTAKSQA	9	Unmodified	_PRVTAKSQA_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2772216796875	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.89441	1	10256	10256		32.812	0	1	7407200	+		60249	22662	42294	42357	65573	65573					0.060319920203255606
PRVTFLVL	8	Unmodified	_PRVTFLVL_					0	0	0			REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7646179199219	2	472.80002	943.585488	-0.62166	-0.00029392	-2.93	-0.0013853	-3.5516	-0.0016792	472.79852039602963	28.079	0.60632	27.91	27.688	28.294	-0.16897					26	14	3	0	0	0	0.027866	1	1651	1651		28.254	4.0515	1	259850	+		60250	33254	42295	42358	65574	65574					0.1114384255350842
PRVTIILNRSN	11	Unmodified	_PRVTIILNRSN_					0	0	0			REV__ENSG00000124171|ENST00000371610|PARD6B	REV__ENSG00000124171|ENST00000371610|PARD6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8828735351562	2	641.883136	1281.75172	0.34308	0.00022022	-1.4955	-0.00095996	-1.1525	-0.00073974	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.0521	1	11575	11575		24.519	0.99649	1	1209200	+		60251	22740	42296	42359	65575	65575					0.12211243991418996
PRVVEEAR	8	Unmodified	_PRVVEEAR_					0	0	0		ENST00000472063.5_1_3:197712648-197723234:+|nuORF;ENST00000480813.1_1_3:197717526-197726214:+|nuORF;nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.25970458984375	2	478.269616	954.524678	-0.56437	-0.00026992	0.96629	0.00046215	0.40193	0.00019223	478.2698577746568	25.38	0.4782	25.345	25.161	25.639	-0.034397					26	11	3	0	0	0	0.027866	1	1157	1157		33.516	9.3128	1	324160			60252	14981	42297	42360	65576	65576					0.045597055032772005
PRVVEEAR	8	Unmodified	_PRVVEEAR_					0	0	0		ENST00000472063.5_1_3:197712648-197723234:+|nuORF;ENST00000480813.1_1_3:197717526-197726214:+|nuORF;nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.269616	954.524678	-0.077762	-3.7191E-05	0.29077	0.00013907	0.21301	0.00010188	478.26960206637636	25.333	0.68511	25.333	25.094	25.779	0	-0.007896	-7.489E-05	NaN	57.811	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326990			60253	14981	42297	42360							0.045597055032772005
PRVVEEAR	8	Unmodified	_PRVVEEAR_					0	0	0		ENST00000472063.5_1_3:197712648-197723234:+|nuORF;ENST00000480813.1_1_3:197717526-197726214:+|nuORF;nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	ENST00000472063.5_1_3:197712648-197723234:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.269616	954.524678	0.31592	0.00015109	0.071808	3.4343E-05	0.38772	0.00018544	478.2694345276621	25.264	0.65554	25.344	25.05	25.706	0.08009	0.0033325	-0.00028434	NaN	57.811	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413610			60254	14981	42297	42360							0.045597055032772005
PRVVILYKP	9	Unmodified	_PRVVILYKP_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8200073242188	2	542.847502	1083.68045	-1.6196	-0.00087921	4.0467	0.0021967	2.427	0.0013175	542.8497552965285	47.479	0.27153	47.538	47.282	47.554	0.059097					10	7	2	0	0	0	0.024506	1	4706	4706		23.042	8.1776	1	141780	+		60255	24946	42298	42361	65577	65577					0.1419577602471236
PRVVPGRLRS	10	Unmodified	_PRVVPGRLRS_					0	0	0		ENST00000345306.10_2_5:68665685-68667980:+|nuORF	ENST00000345306.10_2_5:68665685-68667980:+|nuORF	ENST00000345306.10_2_5:68665685-68667980:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.853271484375	2	568.854181	1135.69381	0.53704	0.0003055	-2.0653	-0.0011748	-1.5282	-0.00086933	568.8529077944462	101.24	1.8533	101.1	100.77	102.62	-0.13156					114	42	5	0	0	0	1.1197	1	12594	12594		20.947	0	1	7301700			60256	12564	42299	42362	65578	65578					0.1313902685665198
PRVVVTQPN	9	Unmodified	_PRVVVTQPN_					0	0	0		nc|ENSG00000055208|Q9NYJ8-2|TAB2;ENSG00000055208|ENST00000637181|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	nc|ENSG00000055208|Q9NYJ8-2|TAB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.2926025390625	2	505.293091	1008.57163	0.94042	0.00047519	-3.8385	-0.0019396	-2.8981	-0.0014644	505.29092519707586	96.16	1.68	96.162	95.825	97.505	0.0020752					75	38	3	0	0	0	0.97973	1	12181	12181		24.519	3.682	1	1004800			60257	1186	42300	42363	65579	65579					0.0676856505442629
PRVWTVLLLK	10	Unmodified	_PRVWTVLLLK_					0	0	0		ENST00000515662.6_1_3:9405395-9406730:+|nuORF	ENST00000515662.6_1_3:9405395-9406730:+|nuORF	ENST00000515662.6_1_3:9405395-9406730:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	408.9345397949219	3	408.932414	1223.77541	0.22501	9.2013E-05	3.771	0.0015421	3.996	0.0016341	408.9339683041264	17.175	1.3972	16.967	16.762	18.159	-0.20713					36	27	2	0	0	0	1.102	1	142	142		11.636	1.9898	1	37974			60258	15906	42301	42364	65580	65580					0.1724770949588219
PRVWTVLLLK	10	Unmodified	_PRVWTVLLLK_					0	0	0		ENST00000515662.6_1_3:9405395-9406730:+|nuORF	ENST00000515662.6_1_3:9405395-9406730:+|nuORF	ENST00000515662.6_1_3:9405395-9406730:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	408.932414	1223.77541	1.6178	0.00066156	2.5202	0.0010306	4.1379	0.0016921	408.9334351713264	17.205	0.85144	17.051	16.856	17.708	-0.15403	0.041901	-0.00051219	NaN	11.636	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50974			60259	15906	42301	42364							0.1724770949588219
PRVYRDLQ	8	Unmodified	_PRVYRDLQ_					0	0	0			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.267822265625	2	523.790715	1045.56688	-1.4363	-0.00075234	0.23306	0.00012207	-1.2033	-0.00063027	523.7907517795006	43.516	0.50827	43.516	43.186	43.695	0					22	13	2	0	0	0	0.027866	1	4052	4052		37.159	0	1	358000	+		60260	25046	42302	42365	65581	65581					0.04591680911653384
PRWGRPYM	8	Oxidation (M)	_PRWGRPYM(Oxidation (M))_		PRWGRPYM(1)		PRWGRPYM(55)	0	0	1			REV__NOTCH1|p.L1531Cfs*49|1|0.27|ENSG00000148400|chr9:136505100-136505100|G/-|frameshift_variant	REV__NOTCH1|p.L1531Cfs*49|1|0.27|ENSG00000148400|chr9:136505100-136505100|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7694702148438	2	539.766186	1077.51782	2.2744	0.0012276	3.8038	0.0020532	6.0782	0.0032808	539.7677109147586	19.153	1.4159	19.22	18.553	19.969	0.066195					72	28	3	0	0	0	0.85409	1	324	324		54.765	12.369	1	193490	+		60261	37292	42303	42366	65582	65582		983			-0.017839306489349838
PRWHGPDL	8	Unmodified	_PRWHGPDL_					0	0	0			REV__ENST00000466368.1_1_7:150755308-150755464:+|nuORF	REV__ENST00000466368.1_1_7:150755308-150755464:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2705078125	2	489.251226	976.487899	-1.2935	-0.00063285	1.5738	0.00077	0.28033	0.00013715	489.25183578080504	39.069	0.32683	39.093	38.844	39.17	0.023727					13	8	2	0	0	0	0.027866	1	3280	3280		45.952	0	1	75408	+		60262	33033	42304	42367	65583	65583					-0.0012854632263952226
PRWHQGRLLLP	11	Unmodified	_PRWHQGRLLLP_					0	0	0			REV__ENST00000503802.5_1_5:118406903-118433690:+|nuORF	REV__ENST00000503802.5_1_5:118406903-118433690:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.2825927734375	3	458.270201	1371.78877	0.060338	2.7651E-05	-0.21186	-9.7089E-05	-0.15152	-6.9438E-05	458.2708323935804	34.502	0.31981	34.278	34.179	34.499	-0.22412					10	7	2	0	0	0	0.024736	1	2568	2568		14.086	0	1	52026	+		60263	33969	42305	42368	65584	65584					0.11774960327852568
PRWLHRSVWRA	11	Unmodified	_PRWLHRSVWRA_					0	0	0		ENST00000339282.11_1_19:12662181-12662316:-|nuORF	ENST00000339282.11_1_19:12662181-12662316:-|nuORF	ENST00000339282.11_1_19:12662181-12662316:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.265625	3	488.609216	1462.80582	-1.2086	-0.00059052	-0.55043	-0.00026894	-1.759	-0.00085947	488.60894989787664	55.621	0.53767	55.464	55.211	55.748	-0.15656					24	14	2	0	0	0	0.024731	1	5992	5992		18.531	0	1	703030			60264	12455	42306	42369	65585	65585					0.09292880933639935
PRWLHRSVWRA	11	Unmodified	_PRWLHRSVWRA_					0	0	0		ENST00000339282.11_1_19:12662181-12662316:-|nuORF	ENST00000339282.11_1_19:12662181-12662316:-|nuORF	ENST00000339282.11_1_19:12662181-12662316:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.26580810546875	3	488.609216	1462.80582	-0.68896	-0.00033663	-0.9123	-0.00044576	-1.6013	-0.00078239	488.9431445904817	55.704	0.54399	55.488	55.201	55.745	-0.21551					24	14	2	0	0	0	0.024731	1	5979	5979		18.531	0	1	597970			60265	12455	42306	42369	65586	65586					0.09292880933639935
PRWNLALS	8	Unmodified	_PRWNLALS_					0	0	0		ENST00000568338.1_1_16:87791029-87795640:-|nuORF	ENST00000568338.1_1_16:87791029-87795640:-|nuORF	ENST00000568338.1_1_16:87791029-87795640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77728271484375	2	478.769252	955.52395	-0.23067	-0.00011044	-1.4329	-0.00068601	-1.6635	-0.00079645	478.7683058480066	28.438	1.4306	28.434	27.692	29.122	-0.0042					81	34	3	0	0	0	0.027866	1	1539	1539		38.806	0	1	1353000			60266	16977	42307	42370	65587	65587					0.04440910854214053
PRWRHFLLWR	10	Unmodified	_PRWRHFLLWR_					0	0	0			REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2705078125	3	489.61419	1465.82074	-1.1346	-0.0005555	0.5909	0.00028931	-0.54368	-0.00026619	489.9498905446606	39.164	0.17858	39.188	39.135	39.313	0.023727					6	4	2	0	0	0	0.03519	1	3280	3280		15.333	2.9003	1	24035	+		60267	35901	42308	42371	65588	65588					0.10646372801647885
PRWRRRRRPW	10	Unmodified	_PRWRRRRRPW_					0	0	0		ENST00000535818.1_1_11:60906157-60928919:-|nuORF;ENST00000536000.1_1_11:60900588-60928919:-|nuORF	ENST00000535818.1_1_11:60906157-60928919:-|nuORF	ENST00000535818.1_1_11:60906157-60928919:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7243957519531	3	507.967738	1520.88138	1.1384	0.00057829	2.1606	0.0010975	3.2991	0.0016758	507.96892588651593	17.755	0.79253	17.601	17.358	18.15	-0.15403					23	15	3	0	0	0	0.03519	1	233	233		4.6126	0.52965	1	23918			60268	16354	42309	42372	65589	65589					0.14177902904566508
PRWRWQRLRRR	11	Unmodified	_PRWRWQRLRRR_					0	0	0			REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.7117614746094	4	417.250092	1664.97126	-0.68745	-0.00028684	0.58151	0.00024263	-0.10594	-4.4205E-05	417.2506262175512	25.595	0.87697	25.369	24.975	25.852	-0.22683					36	20	3	0	0	0	0.024865	1	1271	1271		8.4073	2.9943	1	144380	+		60269	30633	42310	42373	65590	65590					0.16537532513120823
PRWRWQRLRRR	11	Unmodified	_PRWRWQRLRRR_					0	0	0			REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		4	417.250092	1664.97126	0.34385	0.00014347	-0.32235	-0.0001345	0.021503	8.9719E-06	417.2502110686558	25.391	0.88209	25.219	24.907	25.79	-0.17151	-0.074667	-0.00096049	NaN	8.4073	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85300	+		60270	30633	42310	42373							0.16537532513120823
PRWSRSAVP	9	Unmodified	_PRWSRSAVP_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7694091796875	2	528.290882	1054.56721	-0.48552	-0.0002565	-3.9112	-0.0020662	-4.3967	-0.0023227	528.2900886190536	40.264	0.32318	40.264	40.024	40.347	0					12	8	2	0	0	0	0.024487	1	3529	3529		24.203	0	1	276880	+		60271	23897	42311	42374	65591	65591					0.042111006315280974
PRWTSEVRYDW	11	Unmodified	_PRWTSEVRYDW_					0	0	0			REV__chr16:84498111-84500121|156|19.12|0.34|5.83|-|1|TE_info:L1MB5,L1MB5_dup7895,L1,LINE,donor,-,84500121,84500481|MEAK7,None|2	REV__chr16:84498111-84500121|156|19.12|0.34|5.83|-|1|TE_info:L1MB5,L1MB5_dup7895,L1,LINE,donor,-,84500121,84500481|MEAK7,None|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.82696533203125	3	498.908997	1493.70516	-0.54206	-0.00027044	1.1876	0.00059248	0.64549	0.00032204	499.24205173463207	22.35	0.83635	22.165	21.764	22.6	-0.18539					24	17	2	0	0	0	0.024816	1	729	729		21.78	0	1	50094	+		60272	19384	42312	42375	65592	65592					-0.021942406305470286
PRWVPNLN	8	Unmodified	_PRWVPNLN_					0	0	0			REV__ENSG00000085719|ENST00000517490|CPNE3	REV__ENSG00000085719|ENST00000517490|CPNE3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.28961181640625	2	498.274701	994.534849	-0.34419	-0.0001715	0.64526	0.00032152	0.30107	0.00015001	498.27463156659564	51.099	0.50595	50.95	50.792	51.298	-0.14916					14	13	2	0	0	0	0.027866	1	5360	5360		12.207	5.8942	1	157930	+		60273	20756	42313	42376	65593	65593					0.03736313228512245
PRWWRRRRIGE	11	Unmodified	_PRWWRRRRIGE_					0	0	0		ENST00000510882.3_1_6:22569875-22570217:+|nuORF	ENST00000510882.3_1_6:22569875-22570217:+|nuORF	ENST00000510882.3_1_6:22569875-22570217:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.303466796875	3	523.299153	1566.87563	2.8763	0.0015052	-1.081	-0.00056569	1.7953	0.00093948	523.2986571824501	17.392	0.73946	17.392	17.201	17.94	0					23	14	4	0	0	0	0.024898	1	224	224		3.026	1.503	1	50372			60274	15829	42314	42377	65594	65594					0.11486759602234997
PRYAILNEP	9	Unmodified	_PRYAILNEP_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2775268554688	2	536.792924	1071.57129	-1.5602	-0.00083751	3.7762	0.002027	2.216	0.0011895	536.7930402620964	44.229	0.17336	44.085	43.958	44.131	-0.14471					6	4	2	0	0	0	0.024292	1	4178	4178		58.782	16.307	1	52431			60275	3129	42315	42378	65595	65595					0.03837145334568959
PRYEPHVM	8	Unmodified	_PRYEPHVM_					0	0	0			REV__ENSG00000204435|ENST00000375882|CSNK2B	REV__ENSG00000204435|ENST00000375882|CSNK2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7686767578125	2	514.752744	1027.49094	-0.71635	-0.00036874	2.6954	0.0013874	1.979	0.0010187	514.7539704887428	33.628	0.91439	33.628	33.018	33.932	0					27	24	2	0	0	0	0.027866	1	2409	2409		28.254	5.2118	1	116640	+		60276	19455	42316	42379	65596	65596					-0.021710392601335116
PRYIRLQW	8	Unmodified	_PRYIRLQW_					0	0	0		ENST00000488538.1_1_4:83412536-83412710:-|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF	ENST00000488538.1_1_4:83412536-83412710:-|nuORF	ENST00000488538.1_1_4:83412536-83412710:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.3222045898438	2	566.324725	1130.6349	-0.88244	-0.00049975	-3.5119	-0.0019889	-4.3944	-0.0024886	566.3227485471073	106.03	0.53613	105.89	105.56	106.09	-0.1328					55	22	3	0	0	0	1.0239	1	13202	13202		33.516	1.8813	1	385150			60277	14241	42317	42380	65597	65597					0.07480550562308963
PRYLIHQSL	9	Unmodified	_PRYLIHQSL_					0	0	0		ENSG00000131748|ENST00000336308|STARD3;nc|ENSG00000131748|Q14849-2|STARD3;nc|ENSG00000131748|Q14849-3|STARD3;ENST00000580611.5_1_17:37818602-37819158:+|nuORF;ENST00000481171.5_1_17:37819038-37819158:+|nuORF;ENST00000584850.5_1_17:37816530-37819158:+|nuORF;ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENSG00000131748|ENST00000336308|STARD3;ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENSG00000131748|ENST00000336308|STARD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8255615234375	2	563.822015	1125.62948	3.1486	0.0017752	2.8075	0.0015829	5.9561	0.0033582	563.8235006983249	17.506	0.4463	17.506	17.201	17.647	0					14	8	2	0	0	0	0.82115	1	176	176		37.812	3.639	1	47184			60278	4547;15395	42318	42381	65598	65598					0.0716882697984147
PRYLPPEDTL	10	Unmodified	_PRYLPPEDTL_					0	0	0			REV__ENST00000483873.6_1_9:135545612-135545816:+|nuORF	REV__ENST00000483873.6_1_9:135545612-135545816:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.23052978515625	3	400.880156	1199.61864	0.90898	0.00036439	-2.8181	-0.0011297	-1.9091	-0.00076533	400.87877998770165	22.129	0.74465	22.129	22.012	22.757	0					25	15	2	0	0	0	0.03519	1	756	756		51.528	31.213	1	37160	+		60279	33523	42319	42382	65599	65599					0.02681379814907814
PRYMMLAR	8	Unmodified	_PRYMMLAR_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2637329101562	2	519.27279	1036.53103	-0.26761	-0.00013896	1.5618	0.000811	1.2942	0.00067203	519.2731685273162	57.84	0.20054	57.606	57.501	57.702	-0.23363					7	4	2	0	0	0	0.027866	1	6325	6325		18.324	6.8134	1	272150			60280	2493	42320	42383	65600	65600					0.014221841387779932
PRYVVLYDA	9	Unmodified	_PRYVVLYDA_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.29541015625	2	548.295299	1094.57605	-0.80449	-0.0004411	0.68258	0.00037425	-0.12191	-6.6841E-05	548.2957619915276	19.826	2.2552	19.707	19.446	21.701	-0.11872					130	46	5	0	0	0	0.80658	1	483	483		38.806	3.1879	1	5925800			60281	8575	42321	42384	65601	65601					0.032540294773070855
PRYWAEVA	8	Unmodified	_PRYWAEVA_					0	0	0			REV__ENSG00000183379|ENST00000331628|SYNDIG1L	REV__ENSG00000183379|ENST00000331628|SYNDIG1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7660827636719	2	496.253434	990.492316	0.023534	1.1679E-05	2.736	0.0013577	2.7595	0.0013694	496.25452323341597	55.946	0.54923	55.73	55.409	55.958	-0.21607					25	14	2	0	0	0	0.027866	1	6060	6060		38.806	0	1	488190	+		60282	27571	42322	42385	65602	65602					-0.0033108189973063418
PSAAGNLDEQ	10	Unmodified	_PSAAGNLDEQ_					0	0	0		nc|ENSG00000185186|P59037|LINC00313	nc|ENSG00000185186|P59037|LINC00313	nc|ENSG00000185186|P59037|LINC00313	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2310485839844	2	501.230353	1000.44615	-1.4086	-0.00070605	1.9351	0.00096992	0.52646	0.00026388	501.23129103969774	38.586	1.6064	38.613	37.746	39.353	0.027275					120	44	4	0	0	0	0.83673	1	3197	3197		58.23	5.9308	1	4092900			60283	18590	42323	42386	65603	65603					-0.05405191592478786
PSAAPGPLPE	10	Unmodified	_PSAAPGPLPE_					0	0	0			REV__ENST00000304658.9_1_16:28222872-28223133:-|nuORF	REV__ENST00000304658.9_1_16:28222872-28223133:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7901306152344	2	468.245275	934.475997	-0.17322	-8.1112E-05	-2.2078	-0.0010338	-2.381	-0.0011149	468.2441925906771	27.063	0.52444	27.05	26.828	27.352	-0.012983					24	13	2	0	0	0	0.03519	1	1473	1473		34.173	5.023	1	298300	+		60284	30104	42324	42387	65604	65604					0.006137921435197313
PSADGDVGAEL	11	Unmodified	_PSADGDVGAEL_					0	0	0		ENST00000483572.5_1_10:70940047-70942298:+|nuORF;ENSG00000156502|ENST00000359655|SUPV3L1	ENST00000483572.5_1_10:70940047-70942298:+|nuORF	ENST00000483572.5_1_10:70940047-70942298:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2882690429688	2	515.738011	1029.46147	-0.55123	-0.00028429	1.4526	0.00074917	0.90138	0.00046488	515.7387323858711	39.671	1.992	39.518	38.262	40.254	-0.1538					105	53	3	0	0	0	0.024811	1	3436	3436		45.972	1.5951	1	379400			60285	6536	42325	42388	65605	65605					-0.0520832479528508
PSADRASSL	9	Unmodified	_PSADRASSL_					0	0	0		nc|ENSG00000023902|Q53GL0-2|PLEKHO1;ENSG00000023902|ENST00000369124|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.23040771484375	2	452.230156	902.445759	-0.23433	-0.00010597	-0.24529	-0.00011093	-0.47962	-0.0002169	452.23007874856705	26.82	1.3423	26.807	26.537	27.88	-0.012983					52	34	2	0	0	0	0.26966	1	1415	1415		79.713	5.4575	1	6805100			60286	979	42326	42389	65606	65606					-0.009365665216591879
PSADRASSL	9	Unmodified	_PSADRASSL_					0	0	0		nc|ENSG00000023902|Q53GL0-2|PLEKHO1;ENSG00000023902|ENST00000369124|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2301025390625	2	452.230156	902.445759	-0.34562	-0.0001563	-0.015455	-6.9894E-06	-0.36108	-0.00016329	452.23016298377263	26.524	1.6074	26.605	25.75	27.357	0.081291					99	39	6	0	0	0	0.19099	1	1297	1297		90.37	1.7269	1	6063100			60287	979	42326	42389	65607	65607					-0.009365665216591879
PSADRPLVA	9	Unmodified	_PSADRPLVA_					0	0	0			REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.23052978515625	2	463.258717	924.50288	0.67334	0.00031193	0.2583	0.00011966	0.93164	0.00043159	463.25859950722656	36.835	0.83752	36.835	36.613	37.45	0					40	21	3	0	0	0	0.024405	1	3036	3036		44.117	9.9443	1	480830	+		60288	29420	42327	42390	65608	65608					0.03760900754696195
PSADRPLVA	9	Unmodified	_PSADRPLVA_					0	0	0			REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.258717	924.50288	0.30345	0.00014058	0.35312	0.00016359	0.65657	0.00030416	463.2587036842391	36.931	0.42404	36.738	36.578	37.002	-0.193	8.7101E-05	-1.19E-05	NaN	44.117	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190630	+		60289	29420	42327	42390							0.03760900754696195
PSADRPLVA	9	Unmodified	_PSADRPLVA_					0	0	0			REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.258717	924.50288	-0.51083	-0.00023664	1.1965	0.00055429	0.68567	0.00031764	463.2590640000759	36.966	0.47125	36.746	36.528	36.999	-0.2195	0.0082992	0.00076951	NaN	44.117	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258210	+		60290	29420	42327	42390							0.03760900754696195
PSADRPLVA	9	Unmodified	_PSADRPLVA_					0	0	0			REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	REV__ENST00000233638.7_1_2:74741693-74741879:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.258717	924.50288	0.89989	0.00041688	-0.39966	-0.00018515	0.50023	0.00023173	463.2583124783688	36.954	0.51784	36.745	36.405	36.923	-0.2092	0.0065377	-0.00070936	NaN	44.117	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260840	+		60291	29420	42327	42390							0.03760900754696195
PSADYSTPPHR	11	Unmodified	_PSADYSTPPHR_					0	0	0		nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	614.2926025390625	2	614.291276	1226.568	-0.26697	-0.000164	1.0695	0.00065698	0.80253	0.00049299	614.2917694376571	52.684	0.40413	52.494	52.267	52.672	-0.18981					22	9	3	0	0	0	1.0017	1	5473	5473		36.447	4.9169	1	874460			60292	5399	42328	42391	65609	65609					-0.036221495101017354
PSADYSTPPHR	11	Unmodified	_PSADYSTPPHR_					0	0	0		nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	614.291276	1226.568	-1.066	-0.00065485	2.5605	0.0015729	1.4945	0.00091805	614.2926035990423	52.819	0.36162	52.692	52.472	52.833	-0.12705	0.043713	0.0014175	NaN	36.447	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543400			60293	5399	42328	42391							-0.036221495101017354
PSADYSTPPHR	11	Unmodified	_PSADYSTPPHR_					0	0	0		nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	614.291276	1226.568	0.20063	0.00012324	0.8516	0.00052313	1.0522	0.00064637	614.291476338108	53.016	0.47945	52.758	52.482	52.961	-0.25838	0.1101	-0.00068207	NaN	36.447	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389850			60294	5399	42328	42391							-0.036221495101017354
PSAFHRAD	8	Unmodified	_PSAFHRAD_					0	0	0			REV__TBXAS1|p.S288F|1|0.24|ENSG00000059377|chr7:139961962-139961962|C/T|missense_variant	REV__TBXAS1|p.S288F|1|0.24|ENSG00000059377|chr7:139961962-139961962|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7481994628906	2	450.719759	899.424964	-0.15165	-6.8354E-05	0.60888	0.00027444	0.45723	0.00020608	450.71985832242046	31.038	0.57508	31.106	30.87	31.445	0.06896					30	13	3	0	0	0	0.027866	1	1999	1999		85.359	24.388	1	260260	+		60295	37681	42329	42392	65610	65610					-0.02877112110672897
PSAGGSNRLI	10	Unmodified	_PSAGGSNRLI_					0	0	0			REV__ENST00000472564.1_1_13:113976150-113976327:+|nuORF	REV__ENST00000472564.1_1_13:113976150-113976327:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3160400390625	2	486.267073	970.519593	-0.13077	-6.3588E-05	-3.881	-0.0018872	-4.0118	-0.0019508	486.2655765202765	39.333	0.83321	39.333	38.761	39.594	0					45	23	3	0	0	0	0.03519	1	3380	3380		26.693	4.733	1	806090	+		60296	33210	42330	42393	65611	65611					0.03315401640657001
PSAILTLSL	9	Unmodified	_PSAILTLSL_					0	0	0			REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2450866699219	2	457.781493	913.548434	-0.94948	-0.00043465	-1.9577	-0.00089622	-2.9072	-0.0013309	457.7804410540795	24.378	0.40006	24.331	24.133	24.533	-0.047148					14	8	2	0	0	0	0.024436	1	1067	1067		23.042	4.7181	1	322710	+		60297	21343	42331	42394	65612	65612					0.08820126217108282
PSAILTLSL	9	Unmodified	_PSAILTLSL_					0	0	0			REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.781493	913.548434	-0.13114	-6.0032E-05	-2.9086	-0.0013315	-3.0397	-0.0013915	457.78006119415346	24.351	0.44165	24.351	24.166	24.608	0	-0.0083366	-0.00027599	NaN	16.473	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291740	+		60298	21343	42331	42394							0.08820126217108282
PSAILTLSL	9	Unmodified	_PSAILTLSL_					0	0	0			REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	REV__ENST00000602622.5_1_16:67692335-67692557:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.781493	913.548434	0.50958	0.00023328	-3.5566	-0.0016282	-3.047	-0.0013949	457.7796971434148	24.318	0.40959	24.396	24.184	24.594	0.078346	0.036703	-0.00086931	NaN	16.473	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266890	+		60299	21343	42331	42394							0.08820126217108282
PSAISTNLLL	10	Unmodified	_PSAISTNLLL_					0	0	0			REV__nc|ENSG00000078699|O43439-2|CBFA2T2	REV__nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.8156127929688	2	514.802957	1027.59136	-0.76444	-0.00039354	1.3285	0.00068391	0.56405	0.00029037	514.8033771946458	44.696	0.6086	44.452	44.186	44.795	-0.2444					29	15	3	0	0	0	0.03519	1	4223	4223		40.778	5.1599	1	478510	+		60300	20617	42332	42395	65613	65613					0.0786689627452688
PSAISTNLLL	10	Unmodified	_PSAISTNLLL_					0	0	0			REV__nc|ENSG00000078699|O43439-2|CBFA2T2	REV__nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.802957	1027.59136	-0.97627	-0.00050259	1.4569	0.00075001	0.48062	0.00024743	514.8035167835155	44.501	0.49836	44.396	44.168	44.667	-0.10468	-0.034481	4.0383E-05	NaN	40.778	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478200	+		60301	20617	42332	42395							0.0786689627452688
PSALPRTPR	9	Unmodified	_PSALPRTPR_					0	0	0		ENST00000344321.8_1_2:218937581-218939838:+|nuORF;ENST00000374155.7_1_2:218937581-218938631:+|nuORF;nc|ENSG00000188282|Q6ZNE9-3|RUFY4	ENST00000344321.8_1_2:218937581-218939838:+|nuORF	ENST00000344321.8_1_2:218937581-218939838:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25921630859375	2	497.793258	993.571963	-0.054136	-2.6948E-05	0.26357	0.0001312	0.20944	0.00010426	497.7932512879927	20.57	0.394	20.403	20.197	20.591	-0.16774					13	7	2	0	0	0	0.024523	1	580	580		15.642	0	1	113930			60302	12548	42333	42396	65614	65614					0.07491984774264893
PSALSRRAR	9	Unmodified	_PSALSRRAR_					0	0	0			REV__nc|ENSG00000173171|Q13505-2|MTX1	REV__nc|ENSG00000173171|Q13505-2|MTX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.26904296875	2	507.301781	1012.58901	-0.76031	-0.00038571	2.9437	0.0014933	2.1834	0.0011076	507.3031648071859	45.005	0.47361	44.794	44.514	44.988	-0.21109					16	9	2	0	0	0	0.024447	1	4224	4224		25.574	3.6142	1	571090	+		60303	26748	42334	42397	65615	65615					0.08321905380080352
PSAPKMSLER	10	Unmodified	_PSAPKMSLER_					0	0	0		ENST00000556667.1_1_14:37641590-37641863:+|nuORF	ENST00000556667.1_1_14:37641590-37641863:+|nuORF	ENST00000556667.1_1_14:37641590-37641863:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.3057250976562	2	558.297516	1114.58048	-0.83107	-0.00046398	-1.9402	-0.0010832	-2.7713	-0.0015472	558.2967218731255	62.304	0.56976	62.065	61.637	62.207	-0.23926					24	15	2	0	0	0	0.03519	1	7152	7152		18.262	4.808	1	384590			60304	16718	42335	42398	65616	65616					0.027771706285875553
PSAQDSRSRG	10	Unmodified	_PSAQDSRSRG_					0	0	0		nc|ENSG00000148482|Q504Y0-2|SLC39A12;SLC39A12|p.V388Sfs*61|1|0.79|ENSG00000148482|chr10:17987543-17987543|G/-|frameshift_variant;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.282470703125	2	530.760143	1059.50573	-0.75416	-0.00040028	-3.7781	-0.0020053	-4.5323	-0.0024055	530.7579762268498	40.089	0.48949	39.976	39.754	40.243	-0.11222					16	12	2	0	0	0	0.03519	1	3458	3458		45.972	15.469	1	193860			60305	6034	42336	42399	65617	65617					-0.021638758584231255
PSARAASQATR	11	Unmodified	_PSARAASQATR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;DHCR24-PCNXL2|1|fusion;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3062744140625	2	558.299436	1114.58432	-0.78302	-0.00043716	-4.2549	-0.0023755	-5.0379	-0.0028127	558.296961260896	62.013	0.70256	62.013	61.414	62.117	0					24	18	2	0	0	0	0.024735	1	7154	7154		25.126	3.1661	1	367830			60306	4927	42337	42400	65618	65618					0.031609764466338675
PSARAASQATR	11	Unmodified	_PSARAASQATR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;DHCR24-PCNXL2|1|fusion;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.299436	1114.58432	-0.7009	-0.00039131	-5.4794	-0.0030591	-6.1803	-0.0034504	558.2966735021706	61.93	0.42506	61.992	61.735	62.16	0.062763	-0.051118	0.00054329	NaN	23.378	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509330			60307	4927	42337	42400							0.031609764466338675
PSARAASQATR	11	Unmodified	_PSARAASQATR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;DHCR24-PCNXL2|1|fusion;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.299436	1114.58432	-0.30359	-0.00016949	-6.4595	-0.0036064	-6.7631	-0.0037758	558.2956246705179	62.291	0.5072	62.077	61.737	62.244	-0.21375	0.033888	-0.00055115	NaN	23.378	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370160			60308	4927	42337	42400							0.031609764466338675
PSARAASQATR	11	Unmodified	_PSARAASQATR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;DHCR24-PCNXL2|1|fusion;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.299436	1114.58432	-0.8595	-0.00047986	-6.0946	-0.0034026	-6.9541	-0.0038825	558.2960271289369	62.2	0.72832	62.022	61.615	62.343	-0.17781	-0.02136	-0.00014371	NaN	23.378	38	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468990			60309	4927	42337	42400							0.031609764466338675
PSARAASQATR	11	Unmodified	_PSARAASQATR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;DHCR24-PCNXL2|1|fusion;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.299436	1114.58432	-0.51209	-0.0002859	-6.1024	-0.003407	-6.6145	-0.0036929	558.2959170881988	62.349	0.46941	62.091	61.858	62.327	-0.25824	0.047525	-0.00015235	NaN	23.378	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446860			60310	4927	42337	42400							0.031609764466338675
PSARGESIAP	10	Unmodified	_PSARGESIAP_					0	0	0			REV__nc|ENSG00000183876|Q5FYB1-2|ARSI	REV__nc|ENSG00000183876|Q5FYB1-2|ARSI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7684631347656	2	492.759081	983.503609	-0.15427	-7.6019E-05	-0.13087	-6.4488E-05	-0.28514	-0.00014051	492.75890739700674	42.302	1.0371	42.17	41.565	42.602	-0.1322					56	29	3	0	0	0	0.03519	1	3898	3898		84.916	29.411	1	2600400	+		60311	27621	42338	42401	65619	65619					0.011196954037586693
PSARPGACLV	10	Unmodified	_PSARPGACLV_					0	0	0		ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6	ENST00000490483.5_3_19:36500194-36502343:-|nuORF	ENST00000490483.5_3_19:36500194-36502343:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77703857421875	2	485.760569	969.506586	-1.4304	-0.00069483	2.4859	0.0012076	1.0555	0.00051273	485.7608150252903	29.914	0.36216	29.914	29.814	30.176	0					13	8	2	0	0	0	0.03519	1	1908	1908		40.778	12.896	1	188210			60312	10757	42339	42402	65620	65620					0.020612472569268903
PSASEEMENSK	11	Unmodified	_PSASEEMENSK_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.544189453125	3	403.50817	1207.50268	0.083371	3.3641E-05	-0.9414	-0.00037986	-0.85803	-0.00034622	403.50765021606077	25.136	0.65026	24.909	24.581	25.231	-0.22683					31	14	3	0	0	0	0.024789	1	1196	1196		21.032	0	1	186080	+		60313	36707	42340	42403	65621	65621					-0.09276931818135381
PSATEAMH	8	Unmodified	_PSATEAMH_					0	0	0			REV__nc|ENSG00000110079|Q96JQ5-2|MS4A4A	REV__nc|ENSG00000110079|Q96JQ5-2|MS4A4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.72802734375	2	422.186903	842.359253	-0.73412	-0.00030994	1.2894	0.00054438	0.55531	0.00023444	422.18733554897085	24.986	0.47601	24.986	24.697	25.173	0					17	10	2	0	0	0	0.027866	1	1161	1161		28.254	0	1	114210	+		60314	21838	42341	42404	65622	65622					-0.06823269347876249
PSATEAMH	8	Unmodified	_PSATEAMH_					0	0	0			REV__nc|ENSG00000110079|Q96JQ5-2|MS4A4A	REV__nc|ENSG00000110079|Q96JQ5-2|MS4A4A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.186903	842.359253	-1.1233	-0.00047426	1.8418	0.00077759	0.71849	0.00030334	422.18733489284125	25.02	0.26433	24.986	24.815	25.079	-0.034397	-0.00035144	0.00043729	NaN	33.516	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35239	+		60315	21838	42341	42404							-0.06823269347876249
PSATKLHISL	10	Unmodified	_PSATKLHISL_					0	0	0		ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8125	2	533.816399	1065.61824	-1.076	-0.00057436	0.31359	0.0001674	-0.76237	-0.00040696	533.8164178572383	54.445	0.9042	54.445	54.179	55.083	0					65	25	4	0	0	0	0.80817	1	5957	5957		60.118	2.307	1	4931400			60316	9526	42342	42405	65623	65623					0.08806004885695984
PSATTPFLP	9	Unmodified	_PSATTPFLP_					0	0	0			REV__nc|ENSG00000114853|Q9UFB7-2|ZBTB47	REV__nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.795166015625	2	465.750193	929.485833	0.026299	1.2249E-05	-4.0632	-0.0018925	-4.0369	-0.0018802	465.74818777142127	55.505	0.93815	55.349	55.093	56.031	-0.15601					38	25	2	0	0	0	0.024466	1	6123	6123		12.207	0	1	603130	+		60317	22149	42343	42406	65624	65624					0.01826980148905477
PSAYHGHALL	10	Unmodified	_PSAYHGHALL_					0	0	0			REV__nc|ENSG00000197694|Q13813|SPTAN1	REV__nc|ENSG00000197694|Q13813|SPTAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2549438476562	2	533.277441	1064.54033	-0.23568	-0.00012568	2.1432	0.0011429	1.9075	0.0010172	533.7809919736544	52.698	0.30244	52.79	52.674	52.976	0.091942					14	7	3	0	0	0	0.03519	1	5585	5585		44.117	3.5442	1	105610	+		60318	28337	42344	42407	65625	65625					0.01063992020317528
PSCLGVAQTY	10	Unmodified	_PSCLGVAQTY_					0	0	0			REV__ENST00000262061.6_1_12:54745227-54745308:+|nuORF	REV__ENST00000262061.6_1_12:54745227-54745308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7504272460938	2	519.749867	1037.48518	-0.46665	-0.00024254	4.3825	0.0022778	3.9158	0.0020353	519.7519286369215	23.729	0.66337	23.805	23.518	24.182	0.076239					28	14	3	0	0	0	1.0781	1	926	926		35.618	0	1	264230	+		60319	29647	42345	42408	65626	65626					-0.03206182562462345
PSCLGVAQTY	10	Unmodified	_PSCLGVAQTY_					0	0	0			REV__ENST00000262061.6_1_12:54745227-54745308:+|nuORF	REV__ENST00000262061.6_1_12:54745227-54745308:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.749867	1037.48518	-0.95785	-0.00049784	3.629	0.0018862	2.6712	0.0013883	519.7514678983168	23.894	0.68352	23.847	23.36	24.044	-0.047148	0.021011	-0.00060161	NaN	35.618	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273530	+		60320	29647	42345	42408							-0.03206182562462345
PSCLGVAQTY	10	Unmodified	_PSCLGVAQTY_					0	0	0			REV__ENST00000262061.6_1_12:54745227-54745308:+|nuORF	REV__ENST00000262061.6_1_12:54745227-54745308:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	519.749867	1037.48518	-0.46665	-0.00024254	4.3825	0.0022778	3.9158	0.0020353	519.7519286369215	23.729	0.66337	23.805	23.518	24.182	0.076239	-0.021011	0.00018162	NaN	35.618	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264230	+		60321	29647	42345	42408							-0.03206182562462345
PSCLSAPGPL	10	Unmodified	_PSCLSAPGPL_					0	0	0			REV__nc|ENSG00000160446|Q96GR4-3|ZDHHC12	REV__nc|ENSG00000160446|Q96GR4-3|ZDHHC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7900390625	2	471.241678	940.468803	0.00080519	3.7944E-07	-4.1207	-0.0019419	-4.1199	-0.0019415	471.2396678937643	47.987	0.39553	47.987	47.779	48.174	0					16	11	2	0	0	0	0.03519	1	4826	4826		53.351	16.323	1	241560	+		60322	36835	42346	42409	65627	65627					-0.003812637285591336
PSCRLVGV	8	Unmodified	_PSCRLVGV_					0	0	0		ENST00000170447.11_1_3:12624266-12624749:+|nuORF	ENST00000170447.11_1_3:12624266-12624749:+|nuORF	ENST00000170447.11_1_3:12624266-12624749:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2481384277344	2	415.73128	829.448008	-0.38048	-0.00015818	-2.4003	-0.00099789	-2.7808	-0.0011561	415.7298690043604	36.116	0.9423	36.154	35.569	36.511	0.038044					36	25	2	0	0	0	0.027866	1	2754	2754		55.504	0	1	228660			60323	11115	42347	42410	65628	65628					0.026461906824465586
PSCSPGWQH	9	Unmodified	_PSCSPGWQH_					0	0	0			REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3045654296875	2	499.711076	997.4076	-0.57215	-0.00028591	0.73701	0.00036829	0.16486	8.2383E-05	499.7117789170405	60.145	0.21994	59.896	59.762	59.982	-0.24842					7	5	2	0	0	0	0.024523	1	6669	6669		21.96	10.449	1	77416	+		60324	29615	42348	42411	65629	65629					-0.09120775707981466
PSDEQMRPL	9	Unmodified	_PSDEQMRPL_					0	0	0			REV__ENSG00000107159|ENST00000378357|CA9	REV__ENSG00000107159|ENST00000378357|CA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7730102539062	2	536.758223	1071.50189	-0.50499	-0.00027106	2.4071	0.001292	1.9021	0.001021	536.7596827129297	41.468	0.49142	41.345	41.12	41.612	-0.12317					18	13	2	0	0	0	0.023635	1	3739	3739		39.253	8.9351	1	110860	+		60325	21655	42350	42412	65630	65630					-0.030996816764854884
PSDFYYIN	8	Unmodified	_PSDFYYIN_					0	0	0		nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2	nc|ENSG00000152455|Q9H5I1-2|SUV39H2	nc|ENSG00000152455|Q9H5I1-2|SUV39H2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2879943847656	2	509.729458	1017.44436	-1.0563	-0.0005384	3.9409	0.0020088	2.8846	0.0014704	509.73134815339534	64.938	0.32183	64.735	64.577	64.899	-0.20254					13	7	2	0	0	0	0.027866	1	7417	7417		38.806	1.647	1	185990			60326	6273	42351	42413	65631	65631					-0.06366200610432315
PSDGKLSSSR	10	Unmodified	_PSDGKLSSSR_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.265625	2	517.26727	1032.51999	-0.75911	-0.00039266	-3.1526	-0.0016308	-3.9117	-0.0020234	517.2655387136089	57.086	0.79276	57.181	56.815	57.608	0.095306					61	21	4	0	0	0	0.72729	1	6314	6314		65.465	6.6834	1	4951700	+		60327	24340	42352	42414	65632	65632					0.005027765698514486
PSDGTEAK	8	Unmodified	_PSDGTEAK_					0	0	0		ENST00000432926.2_1_12:122459901-122481985:+|nuORF;ENSG00000110987|ENST00000261822|BCL7A;nc|ENSG00000110987|Q4VC05-2|BCL7A	ENST00000432926.2_1_12:122459901-122481985:+|nuORF	ENST00000432926.2_1_12:122459901-122481985:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5535888671875	2	402.690333	803.366112	0.35356	0.00014238	3.3618	0.0013538	3.7154	0.0014961	402.69019972725073	29.48	0.20616	29.308	29.199	29.406	-0.17258					5	4	2	0	0	0	0.027866	1	1812	1812		34.173	11.13	1	16647			60328	3080	42353	42415	65633	65633					-0.04343633195662733
PSDISESLLD	10	Unmodified	_PSDISESLLD_					0	0	0		nc|ENSG00000117682|Q86SQ9-3|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	nc|ENSG00000117682|Q86SQ9-3|DHDDS	nc|ENSG00000117682|Q86SQ9-3|DHDDS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.278076171875	2	538.261319	1074.50808	-0.99881	-0.00053762	4.1515	0.0022346	3.1527	0.001697	538.2635890177713	84.657	0.16742	84.683	84.62	84.788	0.025536					5	3	2	0	0	0	0.03519	1	10534	10534		42.396	6.7778	1	48561			60329	3653	42354	42416	65634	65634					-0.02618884963999335
PSDISLLLL	9	Unmodified	_PSDISLLLL_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.28155517578125	2	485.794601	969.574648	-0.22613	-0.00010985	-0.019423	-9.4354E-06	-0.24555	-0.00011929	485.7945607700573	89.973	0.90483	89.986	89.674	90.578	0.013443					42	21	3	0	0	0	0.024354	1	11254	11254		30.504	0	1	1101600			60330	10614	42355	42417	65635	65635					0.08864395388582125
PSDIVYLIR	9	Unmodified	_PSDIVYLIR_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3099975585938	2	538.310949	1074.60735	0.35009	0.00018845	-3.4192	-0.0018406	-3.0691	-0.0016521	538.309175227564	18.726	0.99057	18.569	18.197	19.188	-0.15637					54	19	6	0	0	0	0.90698	1	328	328		31.955	7.4357	1	1675200			60331	2826	42356	42418	65636	65636					0.0730260251141317
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.28515625	2	577.285463	1152.55637	-1.3281	-0.00076669	1.0891	0.00062874	-0.23897	-0.00013795	577.2860251910333	29.019	0.8674	28.774	28.406	29.273	-0.24524					55	19	4	0	0	0	0.11092	3	1740	1728;1740;1752		108.09	40.594	1	2293500			60332	1640	42358	42419	65637;65638;65639	65638					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.2855224609375	2	577.285463	1152.55637	-0.87706	-0.00050631	0.59477	0.00034335	-0.28229	-0.00016296	577.2857302778656	28.876	0.82255	28.707	28.38	29.203	-0.16897					56	18	5	0	0	0	0.072054	3	1710	1710;1720;1733		120.62	22.039	1	2382000			60333	1640	42358	42419	65640;65641;65642	65640					-0.013803465334149223
PSDPKQYRY	9	Unmodified	_PSDPKQYRY_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000491410.1_1_1:52305873-52344287:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2854614257812	2	577.285463	1152.55637	-0.75536	-0.00043606	0.44091	0.00025453	-0.31446	-0.00018153	577.2856517765262	28.8	0.93319	28.651	28.363	29.296	-0.14952					58	21	5	0	0	0	0.021872	3	1689	1679;1689;1702		148.04	27.175	1	3620700			60334	1640	42358	42419	65643;65644;65645	65644					-0.013803465334149223
PSDVVRCLST	10	Unmodified	_PSDVVRCLST_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7771606445312	2	538.773874	1075.53319	-1.509	-0.00081302	-1.5701	-0.0008459	-3.0791	-0.0016589	538.7726382051533	20.444	0.77242	20.444	20.127	20.9	0					25	15	2	0	0	0	0.03519	1	511	511		12.207	0	1	62403			60335	2034	42359	42420	65646	65646					-0.0015510864241150557
PSDYHAVTV	9	Unmodified	_PSDYHAVTV_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7405090332031	2	494.740357	987.46616	-0.74452	-0.00036835	0.68233	0.00033757	-0.062198	-3.0772E-05	494.74059134076685	53.446	1.7531	53.319	52.874	54.627	-0.12705					116	50	4	0	0	0	0.50848	1	5580	5580		58.782	0.97068	1	6980700	+		60336	28637	42360	42421	65647	65647					-0.028073958618620054
PSEANTSL	8	Unmodified	_PSEANTSL_					0	0	0		nc|ENSG00000168591|Q71RG4-4|TMUB2	nc|ENSG00000168591|Q71RG4-4|TMUB2	nc|ENSG00000168591|Q71RG4-4|TMUB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2474060058594	2	409.698158	817.381762	0.38413	0.00015738	0.092473	3.7886E-05	0.47661	0.00019527	409.6980365771034	37.327	0.61118	37.263	36.978	37.589	-0.063385					40	16	3	0	0	0	0.027866	1	3022	3022		47.657	1.7054	1	990560			60337	18495	42361	42422	65648	65648					-0.03423346678619055
PSEERICH	8	Unmodified	_PSEERICH_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3104553222656	2	485.724184	969.433814	-0.44777	-0.00021749	0.69344	0.00033682	0.24567	0.00011933	485.724202119055	75.001	0.16219	75.001	74.914	75.076	0					6	3	2	0	0	0	0.027866	1	9200	9200		40.573	7.057	1	36676			60338	6541	42362	42423	65649	65649					-0.05212506536497585
PSEGVRKAR	9	Unmodified	_PSEGVRKAR_					0	0	0			REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	REV__ENST00000527805.5_1_11:108093509-108093683:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7664489746094	2	500.28834	998.562127	1.316	0.00065836	2.1435	0.0010724	3.4595	0.0017307	500.28924207143643	37.055	0.73073	37.055	36.648	37.379	0					34	18	2	0	0	0	0.02435	1	2935	2935		34.173	0	1	373240	+		60339	34481	42363	42424	65650	65650					0.06278796768890516
PSEKQAKKV	9	Unmodified	_PSEKQAKKV_					0	0	0			REV__nc|ENSG00000158109|Q5T0D9-2|TPRG1L	REV__nc|ENSG00000158109|Q5T0D9-2|TPRG1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2523193359375	2	507.800749	1013.58694	-0.30955	-0.00015719	-0.18664	-9.4777E-05	-0.49619	-0.00025197	507.80053363688944	36.725	0.43396	36.661	36.432	36.866	-0.063389					18	10	2	0	0	0	0.024436	1	2900	2900		38.806	3.1879	1	163390	+		60340	25174	42364	42425	65651	65651					0.08069431851617992
PSEPFRQP	8	Unmodified	_PSEPFRQP_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3009338378906	2	479.243067	956.47158	0.18268	8.755E-05	2.5598	0.0012268	2.7425	0.0013143	479.2447074717776	37.114	1.8432	37.051	36.47	38.313	-0.063389					91	50	3	0	0	0	0.027866	1	3124	3124		71.378	19.079	1	443180	+		60341	26149	42365	42426	65652	65652					-0.008396722793804656
PSEPFRQP	8	Unmodified	_PSEPFRQP_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	479.243067	956.47158	-0.14189	-6.8002E-05	3.4926	0.0016738	3.3507	0.0016058	479.24485365506854	37.225	1.4544	37.258	36.643	38.097	0.032269					83	38	3	0	0	0	0.027866	1	3083	3083		71.378	39.423	1	519220	+		60342	26149	42365	42426	65653	65653					-0.008396722793804656
PSEPRSVSF	9	Unmodified	_PSEPRSVSF_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7630310058594	2	503.253631	1004.49271	-0.69771	-0.00035113	1.8545	0.00093326	1.1567	0.00058213	503.7571214275754	33.165	0.23112	33.165	33.056	33.287	0					7	5	2	0	0	0	0.024	1	2361	2361		55.504	5.4797	1	52548	+		60343	23983	42366	42427	65654	65654					-0.009357069705174581
PSEPTESKV	9	Unmodified	_PSEPTESKV_					0	0	0		nc|ENSG00000213930|P07902-2|GALT;ENST00000554897.5_1_9:34647205-34648116:+|nuORF	nc|ENSG00000213930|P07902-2|GALT	nc|ENSG00000213930|P07902-2|GALT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7435607910156	2	487.245472	972.476391	-0.71282	-0.00034732	1.3436	0.00065469	0.63083	0.00030737	487.2458970369251	30.27	0.92462	30.092	29.442	30.366	-0.17818					39	21	3	0	0	0	0.024506	1	1825	1825		16.473	0	1	200820			60344	18713	42367	42428	65655	65655					-0.010948329272764568
PSEPVKLL	8	Unmodified	_PSEPVKLL_					0	0	0		nc|ENSG00000189430|O76036-4|NCR1;nc|ENSG00000189430|O76036-5|NCR1;nc|ENSG00000189430|O76036-3|NCR1;nc|ENSG00000189430|O76036-2|NCR1;nc|ENSG00000189430|O76036-6|NCR1;nc|ENSG00000189430|O76036|NCR1;ENSG00000189430|ENST00000291890|NCR1	nc|ENSG00000189430|O76036-4|NCR1	nc|ENSG00000189430|O76036-4|NCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.25909423828125	2	441.768386	881.522219	0.2939	0.00012984	-3.2521	-0.0014367	-2.9581	-0.0013068	441.7668142102079	25.95	1.2527	26.03	25.706	26.959	0.08009					61	29	3	0	0	0	0.027866	1	1355	1355		33.516	26.322	1	1940800			60345	9812	42368	42429	65656	65656					0.07671857045625075
PSEPVKLL	8	Unmodified	_PSEPVKLL_					0	0	0		nc|ENSG00000189430|O76036-4|NCR1;nc|ENSG00000189430|O76036-5|NCR1;nc|ENSG00000189430|O76036-3|NCR1;nc|ENSG00000189430|O76036-2|NCR1;nc|ENSG00000189430|O76036-6|NCR1;nc|ENSG00000189430|O76036|NCR1;ENSG00000189430|ENST00000291890|NCR1	nc|ENSG00000189430|O76036-4|NCR1	nc|ENSG00000189430|O76036-4|NCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	441.768386	881.522219	-0.91154	-0.00040269	-1.838	-0.00081196	-2.7495	-0.0012146	441.7674064043082	26.206	0.58503	25.97	25.72	26.305	-0.23603	-0.018681	0.0006952	NaN	33.516	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902160			60346	9812	42368	42429							0.07671857045625075
PSEPVKLL	8	Unmodified	_PSEPVKLL_					0	0	0		nc|ENSG00000189430|O76036-4|NCR1;nc|ENSG00000189430|O76036-5|NCR1;nc|ENSG00000189430|O76036-3|NCR1;nc|ENSG00000189430|O76036-2|NCR1;nc|ENSG00000189430|O76036-6|NCR1;nc|ENSG00000189430|O76036|NCR1;ENSG00000189430|ENST00000291890|NCR1	nc|ENSG00000189430|O76036-4|NCR1	nc|ENSG00000189430|O76036-4|NCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.768386	881.522219	-0.3119	-0.00013779	-1.5745	-0.00069558	-1.8864	-0.00083337	441.76709440698204	25.958	0.4434	25.787	25.542	25.985	-0.17078	-0.20144	0.00092796	NaN	33.516	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	754730			60347	9812	42368	42429							0.07671857045625075
PSEPVKLL	8	Unmodified	_PSEPVKLL_					0	0	0		nc|ENSG00000189430|O76036-4|NCR1;nc|ENSG00000189430|O76036-5|NCR1;nc|ENSG00000189430|O76036-3|NCR1;nc|ENSG00000189430|O76036-2|NCR1;nc|ENSG00000189430|O76036-6|NCR1;nc|ENSG00000189430|O76036|NCR1;ENSG00000189430|ENST00000291890|NCR1	nc|ENSG00000189430|O76036-4|NCR1	nc|ENSG00000189430|O76036-4|NCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	441.768386	881.522219	-0.73497	-0.00032469	-2.0166	-0.00089085	-2.7515	-0.0012155	441.7671681067413	26.087	0.63941	25.924	25.631	26.271	-0.16331	-0.064978	0.00053741	NaN	33.516	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749150			60348	9812	42368	42429							0.07671857045625075
PSEQQGELD	9	Unmodified	_PSEQQGELD_					0	0	0			REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	REV__nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8241271972656	2	501.722361	1001.43017	0.30125	0.00015115	-0.53091	-0.00026637	-0.22965	-0.00011522	501.7219729048901	42.127	0.2016	42.127	42.02	42.222	0					6	5	2	0	0	0	0.024539	1	3848	3848		14.865	3.3539	1	46001	+		60349	28244	42369	42430	65657	65657					-0.07048897829361067
PSESDELQT	9	Unmodified	_PSESDELQT_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2783203125	2	503.222194	1004.42983	0.50805	0.00025566	0.28447	0.00014315	0.79252	0.00039881	503.2221999316236	79.9	0.29223	79.654	79.53	79.822	-0.2465					9	6	2	0	0	0	0.024397	1	9556	9556		39.253	12.56	1	64731			60350	10075	42370	42431	65658	65658					-0.07220317549240463
PSESDELQT	9	Unmodified	_PSESDELQT_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	503.222194	1004.42983	-0.35088	-0.00017657	0.64773	0.00032595	0.29685	0.00014938	503.2229619348713	79.661	0.42318	79.661	79.405	79.828	0	-0.038017	-0.00056091	NaN	39.253	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102970			60351	10075	42370	42431							-0.07220317549240463
PSESDELQT	9	Unmodified	_PSESDELQT_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.222194	1004.42983	-1.209	-0.00060837	3.2067	0.0016137	1.9978	0.0010053	503.2239722020318	79.915	0.62915	79.743	79.441	80.07	-0.17225	0.043715	0.0020146	NaN	39.253	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75663			60352	10075	42370	42431							-0.07220317549240463
PSESDELQT	9	Unmodified	_PSESDELQT_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.222194	1004.42983	-0.23828	-0.00011991	1.3025	0.00065546	1.0643	0.00053556	503.22274106440517	79.676	0.41941	79.697	79.477	79.896	0.020706	-0.0023372	9.8109E-05	NaN	39.253	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112390			60353	10075	42370	42431							-0.07220317549240463
PSETIPEQTLL	11	Unmodified	_PSETIPEQTLL_					0	0	0		nc|ENSG00000162594|Q5VWK5-7|IL23R;nc|ENSG00000162594|Q5VWK5-5|IL23R;nc|ENSG00000162594|Q5VWK5-6|IL23R;nc|ENSG00000162594|Q5VWK5-2|IL23R;ENSG00000162594|ENST00000347310|IL23R	nc|ENSG00000162594|Q5VWK5-7|IL23R	nc|ENSG00000162594|Q5VWK5-7|IL23R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.8866271972656	3	409.887088	1226.63943	0.50506	0.00020702	-2.7688	-0.0011349	-2.2638	-0.00092789	409.88602842554144	34.648	1.3151	34.648	34.332	35.647	0					99	34	4	0	0	0	0.95911	1	2598	2598		45.908	0.88592	1	12931000			60354	6957	42371	42432	65659	65659					0.03517925403912159
PSEVEQIASL	10	Unmodified	_PSEVEQIASL_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3115844726562	2	536.779679	1071.5448	-1.2749	-0.00068431	2.2271	0.0011954	0.95221	0.00051113	536.7808266455763	34.061	0.7533	34.111	33.804	34.557	0.050255					31	18	2	0	0	0	0.03519	1	2485	2485		19.104	0	1	1033900	+		60355	25956	42372	42433	65660	65660					0.011894116525809295
PSFASTSFSN	10	Unmodified	_PSFASTSFSN_					0	0	0			REV__IL6|p.G10S|1|0.3|ENSG00000136244|chr7:22727452-22727452|G/A|missense_variant	REV__IL6|p.G10S|1|0.3|ENSG00000136244|chr7:22727452-22727452|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8011474609375	2	522.735271	1043.45599	-0.43563	-0.00022772	0.32953	0.00017226	-0.1061	-5.5462E-05	523.2366133821769	19.827	0.32622	19.708	19.543	19.87	-0.11872					13	6	3	0	0	0	0.03519	1	445	445		14.137	0	1	86265	+		60356	36151	42373	42434	65661	65661					-0.06400003587077663
PSFFAKHLP	9	Unmodified	_PSFFAKHLP_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2633056640625	2	522.287277	1042.56	0.20542	0.00010729	-4.3734	-0.0022842	-4.168	-0.0021769	522.2847948604128	54.119	0.34139	53.921	53.827	54.168	-0.19739					12	9	2	0	0	0	0.024381	1	5735	5735		55.504	14.932	1	174290	+		60357	23118	42374	42435	65662	65662					0.04042368031082333
PSFGFRNTL	9	Unmodified	_PSFGFRNTL_					0	0	0			REV__ENST00000378119.8_1_6:24720856-24721054:-|nuORF	REV__ENST00000378119.8_1_6:24720856-24721054:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.801025390625	2	519.771991	1037.52943	-0.49449	-0.00025702	3.2415	0.0016848	2.747	0.0014278	519.7738376825936	51.867	0.66115	51.867	51.77	52.431	0					30	17	2	0	0	0	0.024487	1	5564	5564		31.955	0	1	203350	+		60358	31393	42375	42436	65663	65663					0.012165896460601289
PSFGTLVTVS	10	Unmodified	_PSFGTLVTVS_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2742614746094	2	504.274032	1006.53351	-1.2132	-0.00061177	-0.16161	-8.1493E-05	-1.3748	-0.00069326	504.2737611474597	91.253	1.8872	91.253	90.214	92.101	0					85	44	4	0	0	0	0.30843	2	11561	11561;11574		108.09	5.3716	1	2810900			60359	624	42376	42437	65664;65665	65664					0.03050634349096981
PSFGTLVTVS	10	Unmodified	_PSFGTLVTVS_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2741394042969	2	504.274032	1006.53351	-0.44144	-0.00022261	-1.047	-0.00052796	-1.4884	-0.00075057	504.27337635214184	91.314	1.4678	91.302	90.533	92.001	-0.012383					74	34	4	0	0	0	0.30843	2	11525	11515;11525		108.09	6.4868	1	4327600			60360	624	42376	42437	65666;65667	65667					0.03050634349096981
PSFGTLVTVS	10	Unmodified	_PSFGTLVTVS_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.27398681640625	2	504.274032	1006.53351	0.40531	0.00020439	-1.9144	-0.00096539	-1.5091	-0.000761	504.2729208814128	91.335	2.3544	91.347	90.321	92.675	0.011276					101	56	5	0	0	0	0.20364	3	11490	11468;11490;11504		120.62	15.874	1	4556100			60361	624	42376	42437	65668;65669;65670	65669					0.03050634349096981
PSFIWLVR	8	Unmodified	_PSFIWLVR_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.76409912109375	2	509.297645	1016.58074	-0.43963	-0.0002239	0.7872	0.00040092	0.34757	0.00017702	509.298228284642	31.45	1.1412	31.519	30.744	31.886	0.06896					45	27	3	0	0	0	0.027866	1	2040	2040		35.201	16.876	1	341810	+		60362	27399	42377	42438	65671	65671					0.07310958410766943
PSFLFAKL	8	Unmodified	_PSFLFAKL_					0	0	0			REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7721862792969	2	461.773471	921.53239	1.1331	0.00052325	-3.1658	-0.0014619	-2.0327	-0.00093864	461.77169065097365	98.477	0.98392	98.475	98.139	99.123	-0.0020752					47	22	3	0	0	0	0.99042	1	12510	12510		38.806	1.7777	1	682700	+		60363	25548	42378	42439	65672	65672					0.0684846477084875
PSFLHPPFL	9	Unmodified	_PSFLHPPFL_					0	0	0			REV__ENST00000483582.5_1_3:9974542-9975274:+|nuORF	REV__ENST00000483582.5_1_3:9974542-9975274:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2952270507812	2	527.789653	1053.56475	-1.4658	-0.00077365	0.11437	6.0364E-05	-1.3515	-0.00071329	527.7895170425751	44.518	0.98791	44.374	44.131	45.119	-0.14471					55	28	3	0	0	0	0.024535	1	4357	4357		18.324	6.1176	1	1765100	+		60364	33515	42379	42440	65673	65673					0.04011252173859248
PSFLLDRLI	9	Unmodified	_PSFLLDRLI_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.3230590820312	2	537.321317	1072.62808	0.99053	0.00053223	4.3189	0.0023206	5.3094	0.0028529	537.3221926993008	82.808	1.6688	82.698	82.168	83.837	-0.11006					148	38	6	0	0	0	0.14024	1	10319	10319		101.6	2.9713	1	1716700	+		60365	23162	42380	42441	65674	65674					0.09467192891088416
PSFPPFLDGP	10	Unmodified	_PSFPPFLDGP_					0	0	0			REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3232421875	2	537.26875	1072.52295	-1.2214	-0.0006562	-0.97342	-0.00052299	-2.1948	-0.0011792	537.266177468694	82.932	0.25804	82.959	82.788	83.046	0.02655					7	5	2	0	0	0	0.03519	1	10280	10280		56.721	0	1	33147	+		60366	27143	42381	42442	65675	65675					-0.010413483053525852
PSFRDLLYL	9	Unmodified	_PSFRDLLYL_					0	0	0			REV__nc|ENSG00000176884|Q05586-2|GRIN1	REV__nc|ENSG00000176884|Q05586-2|GRIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3104248046875	2	562.310949	1122.60735	0.044339	2.4932E-05	-0.057416	-3.2286E-05	-0.013077	-7.3534E-06	562.3107990391446	87.524	1.615	87.524	87.152	88.767	0					122	38	4	0	0	0	0.45795	1	11118	11118		62.107	0	1	2858300	+		60367	27052	42382	42443	65676	65676					0.05094602511417179
PSFTTDFTL	9	Unmodified	_PSFTTDFTL_					0	0	0			REV__ENST00000468285.1_1_10:76973815-76980729:+|nuORF	REV__ENST00000468285.1_1_10:76973815-76980729:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7493286132812	2	514.75039	1027.48623	-1.0994	-0.0005659	0.54021	0.00027807	-0.55916	-0.00028783	514.7504997661056	80.17	0.79662	80.019	79.546	80.343	-0.15168					44	18	4	0	0	0	0.72875	1	9937	9937		44.117	5.3107	1	647270	+		60368	25911	42383	42444	65677	65677					-0.02641644921891384
PSFYRSYFSQ	10	Unmodified	_PSFYRSYFSQ_					0	0	0		nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2299499511719	3	427.868139	1280.58259	-0.37074	-0.00015863	-0.26977	-0.00011543	-0.64051	-0.00027405	427.86794217981037	29.386	0.97387	29.464	29.242	30.216	0.078344					42	23	3	0	0	0	0.03519	1	1754	1754		29.551	0	1	257560			60369	7807	42384	42445	65678	65678					-0.04648077361957803
PSGAADPAEI	10	Unmodified	_PSGAADPAEI_					0	0	0			REV__ENSG00000187535|ENST00000426508|IFT140	REV__ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7691955566406	2	464.224539	926.434526	1.9158	0.00088936	-1.0275	-0.000477	0.88828	0.00041236	464.2239345579536	63.141	1.1027	63.195	62.845	63.947	0.054104					52	29	2	0	0	0	0.03519	1	7352	7352		66.429	0	1	192160	+		60370	27940	42385	42446	65679	65679					-0.03163388615803342
PSGAAGGKMA	10	Unmodified	_PSGAAGGKMA_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.7266845703125	2	423.710545	845.406537	-0.66918	-0.00028354	-2.5703	-0.0010891	-3.2395	-0.0013726	423.7085893276481	34.558	0.57753	34.558	34.168	34.746	0					19	14	2	0	0	0	0.03519	1	2550	2550		51.335	20.832	1	140130			60371	9007	42386	42447	65680	65680					-0.022349900768858788
PSGANSGGPVM	11	Unmodified	_PSGANSGGPVM_					0	0	0		nc|ENSG00000155111|Q9BWU1-2|CDK19;ENSG00000155111|ENST00000368911|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.31561279296875	2	487.224017	972.43348	-1.252	-0.00061003	-2.0804	-0.0010136	-3.3325	-0.0016237	487.22300263568934	39.466	0.42879	39.49	39.206	39.635	0.023727					17	11	2	0	0	0	0.024738	1	3355	3355		26.693	22.708	1	169520			60372	6455	42387	42448	65681	65681					-0.05383926256342875
PSGAQQGQPR	10	Unmodified	_PSGAQQGQPR_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.7491455078125	2	513.259779	1024.50501	-0.14178	-7.2772E-05	2.7099	0.0013909	2.5681	0.0013181	513.2609388198264	42	0.69083	41.77	41.274	41.965	-0.2303					26	18	2	0	0	0	0.03519	1	3659	3659		29.17	0.91578	1	356580	+		60373	20569	42388	42449	65682	65682					-0.0062667050747222675
PSGAQQGQPR	10	Unmodified	_PSGAQQGQPR_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.259779	1024.50501	-0.17383	-8.9219E-05	3.359	0.001724	3.1852	0.0016348	513.2611973197643	41.827	0.46786	41.704	41.456	41.924	-0.12299	-0.053233	0.00025683	NaN	28.081	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271180	+		60374	20569	42388	42449							-0.0062667050747222675
PSGAQQGQPR	10	Unmodified	_PSGAQQGQPR_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.259779	1024.50501	-0.46467	-0.0002385	3.268	0.0016773	2.8033	0.0014388	513.2612008924968	42.03	0.57596	41.799	41.43	42.006	-0.23186	0.040881	0.00016339	NaN	28.081	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360110	+		60375	20569	42388	42449							-0.0062667050747222675
PSGASHSHGE	10	Unmodified	_PSGASHSHGE_					0	0	0			REV__ENSG00000179546|ENST00000374619|HTR1D	REV__ENSG00000179546|ENST00000374619|HTR1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2838439941406	2	483.207212	964.399872	-0.64467	-0.00031151	3.2895	0.0015895	2.6449	0.001278	483.20866953110345	39.13	0.53802	38.907	38.686	39.225	-0.22311					27	14	2	0	0	0	0.03519	1	3282	3282		12.812	0	1	289610	+		60376	27274	42389	42450	65683	65683					-0.08375211703889818
PSGATGMPEAR	11	Unmodified	_PSGATGMPEAR_					0	0	0		ENST00000433031.1_1_7:57215791-57215998:-|nuORF	ENST00000433031.1_1_7:57215791-57215998:-|nuORF	ENST00000433031.1_1_7:57215791-57215998:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2965087890625	2	537.255848	1072.49714	0.45409	0.00024396	-2.5975	-0.0013955	-2.1435	-0.0011516	537.2545034116847	63.077	0.52193	63.131	62.888	63.41	0.054104					19	13	2	0	0	0	0.024778	1	7280	7280		22.58	0	1	196730			60377	14213	42390	42451	65684	65684					-0.036205658192557166
PSGCGPELERL	11	Unmodified	_PSGCGPELERL_					0	0	0			REV__ENSG00000142279|ENST00000590071|WTIP	REV__ENSG00000142279|ENST00000590071|WTIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	579.3292846679688	2	579.284605	1156.55466	-0.11554	-6.6928E-05	-1.6613	-0.00096234	-1.7768	-0.0010293	579.2837124545706	47.506	0.28048	47.353	47.161	47.441	-0.15301					12	7	2	0	0	0	0.024757	1	4737	4737		42.338	0	1	141960	+		60378	24150	42391	42452	65685	65685					-0.01735723613683149
PSGDEDRA	8	Unmodified	_PSGDEDRA_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3;SLC24A3|p.G179Efs*36|1|0.12|ENSG00000185052|chr20:19585466-19585466|G/-|frameshift_variant	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.72698974609375	2	423.683039	845.351525	-0.6636	-0.00028116	-2.6187	-0.0011095	-3.2823	-0.0013907	423.6814207744359	34.497	0.25782	34.497	34.371	34.629	0					10	6	2	0	0	0	0.027866	1	2585	2585		12.207	0	1	89535			60379	9404	42392	42453	65686	65686					-0.07733705343810016
PSGDLMQLN	9	Unmodified	_PSGDLMQLN_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2589111328125	2	487.734217	973.453881	-0.46764	-0.00022808	-2.8933	-0.0014112	-3.3609	-0.0016392	487.73259152731833	51.265	0.7513	51.115	50.758	51.509	-0.14916					48	20	3	0	0	0	0.024436	1	5425	5425		16.473	0	1	386550	+		60380	23247	42393	42454	65687	65687					-0.03390755596547024
PSGDLMQLN	9	Unmodified	_PSGDLMQLN_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.734217	973.453881	0.67372	0.0003286	-3.8733	-0.0018891	-3.1996	-0.0015605	487.7321259355738	51.338	0.68817	51.227	50.823	51.511	-0.11163	0.074593	-0.00065039	NaN	10.866	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166280	+		60381	23247	42393	42454							-0.03390755596547024
PSGDLMQLN	9	Unmodified	_PSGDLMQLN_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.734217	973.453881	-0.70788	-0.00034526	-6.8429	-0.0033375	-7.5508	-0.0036828	487.7326752559625	51.507	0.71906	51.23	50.929	51.648	-0.27643	0.078	-0.0035471	NaN	10.866	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226790	+		60382	23247	42393	42454							-0.03390755596547024
PSGDLMQLN	9	Unmodified	_PSGDLMQLN_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.734217	973.453881	1.2892	0.00062878	-8.9475	-0.004364	-7.6583	-0.0037352	487.7315712708667	51.338	0.76763	51.157	50.834	51.601	-0.18071	0.0047217	-0.0056001	NaN	10.866	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212250	+		60383	23247	42393	42454							-0.03390755596547024
PSGDTELLSF	10	Unmodified	_PSGDTELLSF_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2422485351562	2	533.258579	1064.50261	-0.83311	-0.00044426	1.5941	0.00085005	0.76096	0.00040579	533.761311558517	56.365	0.23709	56.14	55.952	56.189	-0.2248					7	5	2	0	0	0	0.03519	1	6072	6072		40.778	20.781	1	54955			60384	18400	42394	42455	65688	65688					-0.02706563755782554
PSGDTKTK	8	Unmodified	_PSGDTKTK_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.5631103515625	2	417.2218	832.429047	-0.1675	-6.9883E-05	1.6222	0.00067683	1.4547	0.00060695	417.2224978685007	28.153	0.50041	28.234	27.992	28.493	0.080811					14	11	2	0	0	0	0.027866	1	1555	1555		30.504	15.639	1	59763	+		60385	28398	42395	42456	65689	65689					0.0061293259238937026
PSGEALVETL	10	Unmodified	_PSGEALVETL_					0	0	0			REV__ENST00000556551.2_1_14:74389384-74398241:+|nuORF	REV__ENST00000556551.2_1_14:74389384-74398241:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.8031921386719	2	508.268947	1014.52334	0.17977	9.1373E-05	-0.61728	-0.00031374	-0.4375	-0.00022237	508.7698742798433	37.157	0.44386	37.093	36.789	37.232	-0.063389					20	11	2	0	0	0	0.03519	1	2948	2948		32.812	0	1	106020	+		60386	35040	42396	42457	65690	65690					0.01666026623865946
PSGFMLTK	8	Unmodified	_PSGFMLTK_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;RABEP1|p.S593Kfs*12|1|0.14|ENSG00000029725|chr17:5365219-5365220|-/CGAAGATT|frameshift_variant;ENST00000575475.2_1_17:5185712-5281605:+|nuORF	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.2437744140625	2	440.733489	879.452425	2.4105	0.0010624	2.9945	0.0013198	5.4049	0.0023821	440.7344685560294	24.705	0.86865	24.525	24.072	24.94	-0.18089					32	19	2	0	0	0	0.027866	1	1109	1109		33.516	14.156	1	164960			60387	1007	42397	42458	65691	65691					0.007876551053414005
PSGFMLTK	8	Unmodified	_PSGFMLTK_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;RABEP1|p.S593Kfs*12|1|0.14|ENSG00000029725|chr17:5365219-5365220|-/CGAAGATT|frameshift_variant;ENST00000575475.2_1_17:5185712-5281605:+|nuORF	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	440.733489	879.452425	-0.25139	-0.0001108	4.1333	0.0018217	3.8819	0.0017109	440.7355750805781	24.604	0.85999	24.429	23.873	24.733	-0.17484	-0.04783	0.0006048	NaN	25.45	34	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186850			60388	1007	42397	42458							0.007876551053414005
PSGGALGPRA	10	Unmodified	_PSGGALGPRA_					0	0	0		ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.226318359375	2	441.743234	881.471915	-0.36215	-0.00015998	0.60223	0.00026603	0.24008	0.00010605	441.7433869996665	29.511	0.67994	29.514	29.276	29.956	0.0031357					40	16	3	0	0	0	0.03519	1	1846	1846		40.778	7.2626	1	653180			60389	7308	42398	42459	65692	65692					0.0264374744045881
PSGGDNKPPK	10	Unmodified	_PSGGDNKPPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80133056640625	2	498.759081	995.503609	-0.17587	-8.7718E-05	0.28322	0.00014126	0.10735	5.354E-05	498.7592183264609	31.268	0.40463	31.337	31.082	31.486	0.06896					12	9	2	0	0	0	0.03519	1	2006	2006		37.812	2.1932	1	47911	+		60390	25017	42399	42460	65693	65693					0.005676954037539872
PSGGPYRESP	10	Unmodified	_PSGGPYRESP_					0	0	0			REV__ENSG00000197077|ENST00000358431|KIAA1671	REV__ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2633056640625	2	523.748713	1045.48287	0.21815	0.00011425	-3.8843	-0.0020344	-3.6661	-0.0019201	524.2487871405992	54.185	0.20636	53.987	53.889	54.096	-0.19739					10	5	3	0	0	0	0.03519	1	5735	5735		30.318	0	1	167170	+		60391	28260	42400	42461	65694	65694					-0.038048949759058814
PSGHDRAQ	8	Unmodified	_PSGHDRAQ_					0	0	0			REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	REV__nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.74786376953125	2	434.207015	866.399478	-0.18929	-8.219E-05	4.3661	0.0018958	4.1768	0.0018136	434.20723732252213	32.993	0.80233	32.828	32.638	33.44	-0.16565					38	19	3	0	0	0	0.027866	1	2286	2286		26.693	8.3685	1	183120	+		60392	29039	42401	42462	65695	65695					-0.039065866330929566
PSGIEFVW	8	Unmodified	_PSGIEFVW_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.75885009765625	2	467.737086	933.459619	-0.44647	-0.00020883	-1.3157	-0.00061542	-1.7622	-0.00082425	467.7357767868039	80.977	0.43617	80.977	80.822	81.258	0					12	10	2	0	0	0	0.027866	1	10092	10092		33.516	0	1	84717	+		60393	22315	42402	42463	65696	65696					-0.00977289022569039
PSGIEFVW	8	Unmodified	_PSGIEFVW_					0	0	0			REV__nc|ENSG00000116962|P14543-2|NID1	REV__nc|ENSG00000116962|P14543-2|NID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7583923339844	2	467.737086	933.459619	-0.1738	-8.1293E-05	-3.8806	-0.0018151	-4.0544	-0.0018964	467.7354887508711	80.968	0.31451	80.992	80.852	81.167	0.023911					11	7	2	0	0	0	0.027866	1	10015	10015		26.796	0.10319	1	70413	+		60394	22315	42402	42463	65697	65697					-0.00977289022569039
PSGIPECLSN	10	Unmodified	_PSGIPECLSN_					0	0	0			REV__ENSG00000164530|ENST00000373674|PI16	REV__ENSG00000164530|ENST00000373674|PI16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.8030700683594	2	508.739499	1015.46445	0.55654	0.00028314	3.0953	0.0015747	3.6518	0.0018578	508.7408636775206	37.332	0.47872	37.332	37.081	37.559	0					18	12	2	0	0	0	0.03519	1	3008	3008		34.173	1.3601	1	81159	+		60395	25767	42403	42464	65698	65698					-0.042667729421282274
PSGKRALI	8	Unmodified	_PSGKRALI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7400817871094	2	421.266345	840.518136	-0.33488	-0.00014107	0.41786	0.00017603	0.082985	3.4959E-05	421.26642496012175	23.017	0.48181	22.956	22.709	23.19	-0.06086					23	10	3	0	0	0	0.027866	1	845	845		16.473	0	1	340110			60396	5043	42404	42465	65699	65699					0.09149812342559471
PSGKTVSSL	9	Unmodified	_PSGKTVSSL_					0	0	0		ENST00000481865.5_1_3:195611475-195611958:-|nuORF	ENST00000481865.5_1_3:195611475-195611958:-|nuORF	ENST00000481865.5_1_3:195611475-195611958:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2248840332031	2	438.245275	874.475997	0.13353	5.8519E-05	0.55783	0.00024447	0.69136	0.00030298	438.2453992585042	34.273	1.0926	34.269	33.715	34.807	-0.0045624					44	27	2	0	0	0	0.024323	1	2495	2495		35.618	0	1	745980			60397	15238	42405	42466	65700	65700					0.03373792143509036
PSGLDRSL	8	Unmodified	_PSGLDRSL_					0	0	0			REV__ENST00000472077.1_1_2:27608458-27608728:-|nuORF	REV__ENST00000472077.1_1_2:27608458-27608728:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.24017333984375	2	422.729792	843.445031	-0.047596	-2.012E-05	-1.1668	-0.00049325	-1.2144	-0.00051337	422.7295090388969	34.124	0.31723	34.12	33.908	34.225	-0.0045624					10	7	2	0	0	0	0.027866	1	2487	2487		40.573	1.7665	1	28308	+		60398	33197	42406	42467	65701	65701					0.017046388292897063
PSGLEHQQT	9	Unmodified	_PSGLEHQQT_					0	0	0		ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-2|FMN1	ENSG00000248905|ENST00000616417|FMN1	ENSG00000248905|ENST00000616417|FMN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.7875671386719	2	498.740888	995.467223	0.0088572	4.4174E-06	-3.8308	-0.0019106	-3.8219	-0.0019062	498.7388139043481	57.145	1.0101	56.981	56.535	57.545	-0.16432					65	27	3	0	0	0	0.024447	1	6377	6377		19.104	0.77911	1	2202300			60399	10837	42407	42468	65702	65702					-0.030691814929582506
PSGLHYGTSM	10	Unmodified	_PSGLHYGTSM_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2681884765625	2	525.239667	1048.46478	-0.81975	-0.00043056	-0.22927	-0.00012042	-1.049	-0.00055098	525.2395086652236	43.418	0.36601	43.279	43.137	43.503	-0.13929					11	9	2	0	0	0	0.03519	1	4065	4065		56.721	15.943	1	69949	+		60400	23325	42408	42469	65703	65703					-0.05751353222262878
PSGLIVLIA	9	Unmodified	_PSGLIVLIA_					0	0	0			REV__ENST00000267812.3_1_15:44097132-44097216:-|nuORF	REV__ENST00000267812.3_1_15:44097132-44097216:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.8533630371094	2	441.786579	881.558604	0.10203	4.5075E-05	-2.1377	-0.00094443	-2.0357	-0.00089935	441.7857731419238	32.102	0.47659	31.91	31.685	32.162	-0.19261					14	10	2	0	0	0	0.024541	1	2167	2167		7.1934	0	1	67311	+		60401	29772	42409	42470	65704	65704					0.11308733942314575
PSGLLPCAEGE	11	Unmodified	_PSGLLPCAEGE_					0	0	0			REV__nc|ENSG00000177663|Q96F46-2|IL17RA	REV__nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.30712890625	2	536.752607	1071.49066	-0.31793	-0.00017065	-0.58882	-0.00031605	-0.90676	-0.0004867	536.7524173137515	67.569	1.2845	67.569	67.01	68.295	0					57	32	2	0	0	0	0.024741	1	8174	8174		30.318	6.115	1	165220	+		60402	27133	42410	42471	65705	65705					-0.04222503770665753
PSGLLSRTDCL	11	Carbamidomethyl (C)	_PSGLLSRTDC(Carbamidomethyl (C))L_	PSGLLSRTDC(1)L		PSGLLSRTDC(49)L		0	1	0			REV__ENST00000534025.5_1_11:8986210-8986279:-|nuORF	REV__ENST00000534025.5_1_11:8986210-8986279:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.87908935546875	3	406.876417	1217.60742	1.6343	0.00066496	2.6917	0.0010952	4.326	0.0017601	406.87726413832445	20.138	1.2696	19.939	19.507	20.776	-0.19843					89	25	5	0	0	0	0.94699	1	520	520		48.602	8.7284	1	2716700	+		60403	34625	42411	42472	65706	65706	454				0.007322344491285548
PSGLSATLTK	10	Unmodified	_PSGLSATLTK_					0	0	0		nc|ENSG00000179676|Q7Z4B0-2|LINC00305;nc|ENSG00000179676|Q7Z4B0|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7924499511719	2	487.779482	973.544411	-0.82952	-0.00040462	0.82944	0.00040458	-7.8571E-05	-3.8325E-08	487.7798168457447	35.705	0.54439	35.749	35.459	36.003	0.04406					31	13	3	0	0	0	0.03519	1	2750	2750		18.262	0	1	239740			60404	18556	42412	42473	65707	65707					0.05658036723366422
PSGLSVPFST	10	Unmodified	_PSGLSVPFST_					0	0	0		nc|ENSG00000167772|Q9BY76-3|ANGPTL4;nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ENSG00000167772|ENST00000301455|ANGPTL4	nc|ENSG00000167772|Q9BY76-3|ANGPTL4	nc|ENSG00000167772|Q9BY76-3|ANGPTL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.72271728515625	2	496.258382	990.502212	0.29516	0.00014648	3.1983	0.0015872	3.4935	0.0017337	496.25973921591486	46.981	1.5032	46.981	46.308	47.811	0					67	42	3	0	0	0	0.03519	1	4798	4798		51.335	14.176	1	562030			60405	7736	42413	42474	65708	65708					0.006580613150163117
PSGLTLPSL	9	Unmodified	_PSGLTLPSL_					0	0	0			REV__ENST00000505569.5_1_5:176948978-176952218:-|nuORF	REV__ENST00000505569.5_1_5:176948978-176952218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2712707519531	2	442.758018	883.501483	0.045497	2.0144E-05	-3.7847	-0.0016757	-3.7392	-0.0016556	442.7546680480972	46.522	0.17501	46.574	46.474	46.649	0.051395					6	4	2	0	0	0	0.022924	1	4547	4547		73.975	13.681	1	36137	+		60406	24456	42414	42475	65709	65709					0.055072666659384595
PSGLVINF	8	Unmodified	_PSGLVINF_					0	0	0		ENST00000479075.5_1_1:33116364-33116469:-|nuORF	ENST00000479075.5_1_1:33116364-33116469:-|nuORF	ENST00000479075.5_1_1:33116364-33116469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.7269287109375	2	423.739628	845.464704	-0.60729	-0.00025733	0.36429	0.00015436	-0.243	-0.00010297	423.74166834978763	34.398	0.58916	34.448	34.173	34.762	0.050255					23	14	3	0	0	0	0.027866	1	2471	2471		42.474	10.52	1	133760			60407	15161	42415	42476	65710	65710					0.03579014840045147
PSGLVLNQV	9	Unmodified	_PSGLVLNQV_					0	0	0			REV__ITGAD|p.A423S|1|0.35|ENSG00000156886|chr16:31410789-31410789|G/T|missense_variant	REV__ITGAD|p.A423S|1|0.35|ENSG00000156886|chr16:31410789-31410789|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2303161621094	2	463.768917	925.523281	0.64834	0.00030068	0.68637	0.00031832	1.3347	0.000619	463.7689117031088	37.358	0.68211	37.39	36.918	37.6	0.032269					26	17	3	0	0	0	0.024381	1	2988	2988		29.15	10.825	1	108770	+		60408	36157	42416	42477	65711	65711					0.05754071414526152
PSGLVLNQV	9	Unmodified	_PSGLVLNQV_					0	0	0			REV__ITGAD|p.A423S|1|0.35|ENSG00000156886|chr16:31410789-31410789|G/T|missense_variant	REV__ITGAD|p.A423S|1|0.35|ENSG00000156886|chr16:31410789-31410789|G/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.768917	925.523281	-0.076164	-3.5322E-05	0.72071	0.00033424	0.64455	0.00029892	463.76902509862265	37.221	0.50744	37.012	36.806	37.313	-0.2092	-0.26342	-8.3736E-05	NaN	5.9211	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179230	+		60409	36157	42416	42477							0.05754071414526152
PSGLVNGR	8	Unmodified	_PSGLVNGR_					0	0	0		ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073974609375	2	400.224677	798.434801	-0.6398	-0.00025606	0.2571	0.0001029	-0.3827	-0.00015317	400.22472651999544	27.875	0.81014	27.723	27.19	28	-0.15195					30	19	2	0	0	0	0.027866	1	1531	1531		3.41	0	1	91207			60410	9119	42417	42478	65712	65712					0.027520758947161994
PSGLWAWLV	9	Unmodified	_PSGLWAWLV_					0	0	0		ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7611083984375	2	514.781828	1027.5491	-0.43799	-0.00022547	-0.40979	-0.00021095	-0.84778	-0.00043642	515.2839981690009	70.885	0.56427	70.896	70.636	71.2	0.010735					18	13	2	0	0	0	0.024466	1	8483	8483		18.324	0	1	295320			60411	11231	42418	42479	65713	65713					0.03642965656786146
PSGLWAWLV	9	Unmodified	_PSGLWAWLV_					0	0	0		ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	ENST00000230053.10_1_6:71571672-71665663:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.781828	1027.5491	0.88722	0.00045673	-2.7496	-0.0014154	-1.8623	-0.0009587	515.2825366436583	71.193	0.23709	70.904	70.761	70.998	-0.28858	0.0044793	-0.0012601	NaN	18.324	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135520			60412	11231	42418	42479							0.03642965656786146
PSGPAAAGTKP	11	Unmodified	_PSGPAAAGTKP_					0	0	0		ENST00000412649.5_1_22:19170842-19171202:-|nuORF	ENST00000412649.5_1_22:19170842-19171202:-|nuORF	ENST00000412649.5_1_22:19170842-19171202:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2548828125	2	477.256174	952.497795	0.90653	0.00043265	0.074427	3.5521E-05	0.98095	0.00046817	477.2557371752762	41.456	1.2365	41.456	41.085	42.322	0					126	35	7	0	0	0	0.849	1	3754	3754		54.722	3.3869	1	5488400			60413	13822	42419	42480	65714	65714					0.019645968920826817
PSGPFLGALT	10	Unmodified	_PSGPFLGALT_					0	0	0			REV__ENST00000342983.6_1_X:131351517-131351760:-|nuORF	REV__ENST00000342983.6_1_X:131351517-131351760:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2921142578125	2	480.263468	958.512382	-0.85919	-0.00041264	-1.3683	-0.00065715	-2.2275	-0.0010698	480.26277856079867	55.751	0.25784	55.849	55.707	55.965	0.098015					10	6	2	0	0	0	0.03519	1	6080	6080		49.442	32.077	1	59284	+		60414	30654	42420	42481	65715	65715					0.031466690402339736
PSGPKRPI	8	Unmodified	_PSGPKRPI_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77484130859375	2	426.25852	850.502486	-0.29768	-0.00012689	0.52524	0.00022389	0.22755	9.6997E-05	426.2586075132048	41.743	0.83685	41.611	41.18	42.017	-0.1322					42	23	2	0	0	0	0.027866	1	3823	3823		16.473	4.2663	1	676310	+		60415	20141	42421	42482	65716	65716					0.07125525825506429
PSGPPGPPGQV	11	Unmodified	_PSGPPGPPGQV_					0	0	0			REV__nc|ENSG00000188153|P29400|COL4A5	REV__nc|ENSG00000188153|P29400|COL4A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2828063964844	2	495.256174	988.497795	-0.73091	-0.00036199	1.9689	0.00097512	1.238	0.00061314	495.25693287402714	40.198	0.78835	40.221	39.705	40.494	0.023006					34	21	2	0	0	0	0.024732	1	3434	3434		13.454	0	1	196280	+		60416	28012	42422	42483	65717	65717					0.0030859689210274155
PSGPRGAQLL	10	Unmodified	_PSGPRGAQLL_					0	0	0			REV__ENSG00000142700|ENST00000404795|DMRTA2	REV__ENSG00000142700|ENST00000404795|DMRTA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.7170715332031	2	498.285266	994.555979	0.49143	0.00024487	-3.5869	-0.0017873	-3.0955	-0.0015424	498.2835075657663	35.994	0.92074	35.796	35.575	36.496	-0.19829					31	24	2	0	0	0	0.03519	1	2872	2872		37.812	1.3648	1	242840	+		60417	24179	42423	42484	65718	65718					0.05848278537382612
PSGQLKLKA	9	Unmodified	_PSGQLKLKA_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7549743652344	2	471.292559	940.570566	0.34747	0.00016376	-2.72	-0.0012819	-2.3725	-0.0011182	471.2917958960786	37.512	0.30182	37.544	37.413	37.715	0.032269					11	7	2	0	0	0	0.024436	1	3010	3010		10.866	0	1	81106	+		60418	20753	42424	42485	65719	65719					0.09790350685500471
PSGQPLPW	8	Unmodified	_PSGQPLPW_					0	0	0			REV__ENST00000604367.1_1_3:46963549-46963975:-|nuORF	REV__ENST00000604367.1_1_3:46963549-46963975:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.2276916503906	2	441.229428	880.444303	-0.40437	-0.00017842	-4.1358	-0.0018248	-4.5401	-0.0020032	441.22755708714925	34.963	0.90191	34.963	34.59	35.492	0					65	23	4	0	0	0	0.78609	1	2672	2672		60.294	4.7898	1	5401700	+		60419	35907	42425	42486	65720	65720					-0.0007015581977611873
PSGQQIAR	8	Unmodified	_PSGQQIAR_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.227294921875	2	428.735409	855.456264	-0.54478	-0.00023356	0.64234	0.00027539	0.097563	4.1829E-05	428.73573671038116	27.292	0.39979	27.292	27.144	27.544	0					16	10	2	0	0	0	0.027866	1	1491	1491		31.955	0	1	257170			60420	8901	42426	42487	65721	65721					0.022754609234084455
PSGRATWSL	9	Unmodified	_PSGRATWSL_					0	0	0		ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	ENST00000416880.5_1_3:42610473-42623377:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79229736328125	2	487.756341	973.498129	-0.85195	-0.00041555	-3.0469	-0.0014861	-3.8988	-0.0019017	487.7568936697455	36.133	0.69011	36.171	35.855	36.545	0.038044					50	19	4	0	0	0	0.024025	1	2808	2808		52.937	0	1	746730			60421	13906	42427	42488	65722	65722					0.01032016611952713
PSGREDKVA	9	Unmodified	_PSGREDKVA_					0	0	0		ENST00000565646.5_1_16:75446626-75467250:-|nuORF	ENST00000565646.5_1_16:75446626-75467250:-|nuORF	ENST00000565646.5_1_16:75446626-75467250:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7688293457031	2	479.751256	957.487959	-0.25479	-0.00012224	-0.26262	-0.00012599	-0.51741	-0.00024823	479.75108579117204	28.183	0.91799	28.178	27.581	28.499	-0.0042019					39	22	2	0	0	0	0.024495	1	1641	1641		14.137	0	1	234030			60422	16924	42428	42489	65723	65723					0.007514088867083046
PSGRFTMN	8	Unmodified	_PSGRFTMN_					0	0	0		ENSG00000197299|ENST00000355112|BLM;ENST00000558825.5_1_15:91337395-91358506:+|nuORF	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.26129150390625	2	455.215995	908.417436	-0.58792	-0.00026763	1.9307	0.00087888	1.3428	0.00061125	455.2169170781592	29.408	0.21424	29.236	29.07	29.284	-0.17258					6	4	2	0	0	0	0.027866	1	1779	1779		24.203	14.018	1	31101			60423	9980	42429	42490	65724	65724					-0.04043587702597051
PSGRNIFPG	9	Unmodified	_PSGRNIFPG_					0	0	0		SIGLEC1|p.L253F|1|0.3|ENSG00000088827|chr20:3704041-3704041|G/A|missense_variant	SIGLEC1|p.L253F|1|0.3|ENSG00000088827|chr20:3704041-3704041|G/A|missense_variant	SIGLEC1|p.L253F|1|0.3|ENSG00000088827|chr20:3704041-3704041|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7532653808594	2	472.751059	943.487565	0.91414	0.00043216	4.0675	0.0019229	4.9817	0.0023551	472.7530210484187	39.59	1.3676	39.59	39.219	40.587	0					103	38	5	0	0	0	0.62163	1	3452	3452		51.335	7.2187	1	14314000			60424	37873	42430	42491	65725	65725					0.013560339575064972
PSGRPSGPGP	10	Unmodified	_PSGRPSGPGP_					0	0	0			REV__ENSG00000105650|ENST00000262805|PDE4C	REV__ENSG00000105650|ENST00000262805|PDE4C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2611999511719	2	454.732866	907.451179	-0.55091	-0.00025052	2.4479	0.0011131	1.897	0.00086263	454.73324220056423	29.352	0.43395	29.18	28.85	29.284	-0.17258					14	9	3	0	0	0	0.03519	1	1767	1767		21.96	4.5949	1	68587	+		60425	21549	42431	42492	65726	65726					-0.006248429391916943
PSGRRALH	8	Unmodified	_PSGRRALH_					0	0	0			REV__ENST00000311127.8_1_3:124686878-124687106:-|nuORF	REV__ENST00000311127.8_1_3:124686878-124687106:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.2700500488281	2	447.256843	892.499132	-0.12144	-5.4314E-05	-1.7826	-0.00079727	-1.904	-0.00085158	447.2555429013677	22.882	0.95259	22.821	22.238	23.19	-0.060862					33	20	3	0	0	0	0.027866	1	791	791		12.207	0	1	68991	+		60426	30198	42432	42493	65727	65727					0.04858275771505305
PSGRRPSL	8	Unmodified	_PSGRRPSL_					0	0	0			REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.77874755859375	2	435.251226	868.487899	0.47129	0.00020513	-0.058037	-2.5261E-05	0.41325	0.00017987	435.251162613829	81.867	2.2708	81.638	81.105	83.376	-0.2289					110	52	3	0	0	0	0.027866	1	10030	10030		10.866	4.5529	1	447380	+		60427	33752	42433	42494	65728	65728					0.048394536773685104
PSGRRPSL	8	Unmodified	_PSGRRPSL_					0	0	0			REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7788391113281	2	435.251226	868.487899	0.26926	0.00011719	0.017926	7.8025E-06	0.28718	0.000125	435.25122327213165	81.962	1.9262	81.768	81.377	83.304	-0.19334					70	44	2	0	0	0	0.027866	1	10049	10049		44.117	0	1	404160	+		60428	33752	42433	42494	65729	65729					0.048394536773685104
PSGRRPSL	8	Unmodified	_PSGRRPSL_					0	0	0			REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.251226	868.487899	-0.08313	-3.6182E-05	0.56903	0.00024767	0.4859	0.00021149	435.2515326403465	81.632	1.7469	81.632	81.218	82.965	0	-0.02497	0.00024193	NaN	10.866	71	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311230	+		60429	33752	42433	42494							0.048394536773685104
PSGRRPSL	8	Unmodified	_PSGRRPSL_					0	0	0			REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	REV__ENST00000492981.1_1_3:113465783-113465960:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.251226	868.487899	-0.12471	-5.4282E-05	0.70277	0.00030588	0.57806	0.0002516	435.2515787460813	81.625	1.5418	81.649	81.33	82.871	0.024391	-0.0072644	0.00035835	NaN	10.866	53	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282240	+		60430	33752	42433	42494							0.048394536773685104
PSGRRRGSG	9	Unmodified	_PSGRRRGSG_					0	0	0			REV__ENST00000392985.3_1_6:87864937-87865015:+|nuORF	REV__ENST00000392985.3_1_6:87864937-87865015:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7843322753906	2	465.254831	928.49511	-0.85513	-0.00039786	3.7761	0.0017568	2.9209	0.001359	465.2562993128745	44.77	0.95927	44.77	44.451	45.41	0					82	27	4	0	0	0	0.024374	1	4250	4250		32.812	11.865	1	2806800	+		60431	31627	42434	42495	65730	65730					0.028001862778069153
PSGRRRGSG	9	Unmodified	_PSGRRRGSG_					0	0	0			REV__ENST00000392985.3_1_6:87864937-87865015:+|nuORF	REV__ENST00000392985.3_1_6:87864937-87865015:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.78448486328125	2	465.254831	928.49511	-0.78281	-0.00036421	3.4025	0.001583	2.6197	0.0012188	465.2562866761625	44.953	0.75896	44.805	44.488	45.247	-0.1488					58	21	3	0	0	0	0.024477	1	4262	4262		20.947	0	1	3075900	+		60432	31627	42434	42495	65731	65731					0.028001862778069153
PSGSPAAAFSH	11	Unmodified	_PSGSPAAAFSH_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7432861328125	2	514.743431	1027.47231	-0.0069849	-3.5954E-06	0.43148	0.0002221	0.4245	0.00021851	514.7434221584039	69.928	0.63452	69.928	69.423	70.058	0					35	15	4	0	0	0	1.0017	1	8449	8449		36.447	2.9312	1	2295800			60433	7519	42435	42496	65732	65732					-0.04032877630334042
PSGTIRPQ	8	Unmodified	_PSGTIRPQ_					0	0	0			REV__nc|ENSG00000126453|Q9HB09-2|BCL2L12	REV__nc|ENSG00000126453|Q9HB09-2|BCL2L12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7220153808594	2	428.237784	854.461016	-0.76594	-0.00032801	0.83823	0.00035896	0.072292	3.0958E-05	428.2379847959308	32.722	1.4383	32.722	32.262	33.7	0					75	38	3	0	0	0	0.027866	1	2337	2337		7.1934	0	1	1478600	+		60434	36641	42436	42497	65733	65733					0.027963450661786737
PSGTQQILL	9	Unmodified	_PSGTQQILL_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.30120849609375	2	478.7742	955.533846	0.41123	0.00019689	0.066697	3.1933E-05	0.47793	0.00022882	478.77405287200753	68.055	0.9412	67.767	67.429	68.371	-0.28834					59	23	4	0	0	0	0.023061	1	8085	8085		90.37	29.398	1	2718400			60435	1273	42437	42498	65734	65734					0.05430054068960999
PSGTVIGKLS	10	Unmodified	_PSGTVIGKLS_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12;PCDH12|p.L588Rfs*12|1|0.28|ENSG00000113555|chr5:141956078-141956091|TGGGCACCAGCAGG/-|frameshift_variant	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.28973388671875	2	479.782025	957.549496	0.50412	0.00024187	-0.20501	-9.836E-05	0.29911	0.00014351	479.7816710384877	52.454	0.69909	52.307	52.021	52.72	-0.14723					34	17	3	0	0	0	0.03519	1	5657	5657		37.812	4.2959	1	827620			60436	3302	42438	42499	65735	65735					0.06902340586009359
PSGVEPFGG	9	Unmodified	_PSGVEPFGG_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.24017333984375	2	423.703243	845.391933	-0.12334	-5.2262E-05	4.4804	0.0018983	4.357	0.0018461	423.7053051455084	34.309	0.54559	34.305	33.829	34.375	-0.0045624					16	13	2	0	0	0	0.022756	1	2487	2487		79.451	8.1553	1	41980	+		60437	23586	42439	42500	65736	65736					-0.0369473895336796
PSGVGAPAGAP	11	Unmodified	_PSGVGAPAGAP_					0	0	0		ENST00000433861.6_2_3:9773506-9775843:+|nuORF;ENST00000420291.1_1_3:9773506-9774924:+|nuORF	ENST00000433861.6_2_3:9773506-9775843:+|nuORF	ENST00000433861.6_2_3:9773506-9775843:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2276916503906	2	440.729792	879.445031	-0.22921	-0.00010102	0.5784	0.00025492	0.34919	0.0001539	440.7298982623362	34.464	1.1567	34.464	33.972	35.129	0					54	29	3	0	0	0	0.024783	1	2672	2672		42.396	8.2236	1	1745500			60438	13969	42440	42501	65737	65737					0.000486388292756601
PSGVGGRSM	9	Unmodified	_PSGVGGRSM_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.2226867675781	2	424.20817	846.401786	-1.6556	-0.00070231	-0.86686	-0.00036773	-2.5224	-0.00107	424.20774001282507	29.537	0.24311	29.537	29.408	29.652	0					8	5	2	0	0	0	0.024021	1	1802	1802		19.104	0	1	43257	+		60439	24036	42441	42502	65738	65738					-0.027558742196447383
PSGVGRAVAM	10	Unmodified	_PSGVGRAVAM_					0	0	0			REV__nc|ENSG00000135625|Q05215|EGR4	REV__nc|ENSG00000135625|Q05215|EGR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.75543212890625	2	472.752744	943.490935	-0.53815	-0.00025441	2.0839	0.00098515	1.5457	0.00073074	472.7538156002825	39.589	1.3408	39.49	39.091	40.431	-0.098755					113	36	6	0	0	0	0.96965	1	3404	3404		49.442	1.5259	1	12900000	+		60440	36691	42442	42503	65739	65739					0.01692960739865157
PSGWGSIPGL	10	Unmodified	_PSGWGSIPGL_					0	0	0		ENST00000375534.7_2_1:17301125-17301296:-|nuORF	ENST00000375534.7_2_1:17301125-17301296:-|nuORF	ENST00000375534.7_2_1:17301125-17301296:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.3160095214844	2	485.753267	969.491981	-1.0373	-0.00050389	1.7839	0.00086655	0.74659	0.00036266	485.7520695555587	39.581	0.24522	39.482	39.269	39.514	-0.098755					8	6	2	0	0	0	0.03519	1	3382	3382		42.396	18.193	1	89756			60441	13162	42443	42504	65740	65740					0.006014983804220719
PSGWRPTE	8	Unmodified	_PSGWRPTE_					0	0	0			REV__GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	REV__GAB2|p.P512Lfs*19|1|0.31|ENSG00000033327|chr11:78223444-78223444|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7642822265625	2	465.227417	928.44028	-1.2898	-0.00060003	-2.3507	-0.0010936	-3.6405	-0.0016936	465.2246090247991	38.305	0.1571	38.305	38.199	38.356	0					6	4	2	0	0	0	0.027866	1	3203	3203		23.042	6.5693	1	39437	+		60442	20055	42444	42505	65741	65741					-0.02680245313490559
PSGWWLVE	8	Unmodified	_PSGWWLVE_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7607421875	2	487.242535	972.470518	-0.765	-0.00037274	3.9889	0.0019435	3.2239	0.0015708	487.2461532284148	25.661	0.33101	25.434	25.271	25.602	-0.22683					21	7	5	0	0	0	0.027866	1	1238	1238		12.959	0	1	122490			60443	9868	42445	42506	65742	65742					-0.01681886648282216
PSGYIISPN	9	Unmodified	_PSGYIISPN_					0	0	0		CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.2637023925781	2	474.245275	946.475997	-0.055097	-2.6129E-05	1.3758	0.00065246	1.3207	0.00062633	474.2452262211063	78.283	0.98621	78.127	77.87	78.856	-0.15592					42	22	3	0	0	0	0.024397	1	9296	9296		39.253	0	1	159540			60444	606	42446	42507	65743	65743					0.0006179214352641793
PSGYPVTWP	9	Unmodified	_PSGYPVTWP_					0	0	0		ENST00000463808.1_1_16:2122597-2124590:+|nuORF	ENST00000463808.1_1_16:2122597-2124590:+|nuORF	ENST00000463808.1_1_16:2122597-2124590:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2747497558594	2	502.247818	1002.48108	-0.31301	-0.00015721	3.6266	0.0018214	3.3136	0.0016642	502.2494534823178	34.514	0.60851	34.307	34.082	34.69	-0.20695					32	14	3	0	0	0	0.024523	1	2586	2586		29.15	18.884	1	639330			60445	14743	42447	42508	65744	65744					-0.020059039938587375
PSHLTTRQ	8	Unmodified	_PSHLTTRQ_					0	0	0			REV__ENST00000567998.5_1_16:28621246-28621501:-|nuORF	REV__ENST00000567998.5_1_16:28621246-28621501:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7879333496094	2	470.253966	938.493378	-0.11207	-5.27E-05	0.67603	0.00031791	0.56397	0.00026521	470.2539012941747	23.844	0.85641	23.844	23.441	24.297	0					37	19	3	0	0	0	0.027866	1	971	971		31.955	6.5047	1	1199600	+		60446	35189	42448	42509	65745	65745					0.02167132469196531
PSHQQRISI	9	Unmodified	_PSHQQRISI_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|145|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|145|1|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|145|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2696533203125	2	533.293622	1064.57269	-0.83878	-0.00044731	0.36791	0.0001962	-0.47087	-0.00025111	533.293281579618	82.577	0.94084	82.602	82.358	83.299	0.025711					27	21	3	0	0	0	0.0242	1	10308	10308		51.193	0	1	104860			60447	17895	42449	42510	65746	65746					0.04298779423334054
PSICKEMPI	9	Oxidation (M)	_PSICKEM(Oxidation (M))PI_		PSICKEM(1)PI		PSICKEM(72)PI	0	0	1			REV__ENST00000563278.1_1_15:75661521-75661626:+|nuORF	REV__ENST00000563278.1_1_15:75661521-75661626:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.25634765625	2	517.256471	1032.49839	0.24574	0.00012711	-1.8165	-0.0009396	-1.5708	-0.00081249	517.2560356191437	81.907	0.93947	81.678	81.312	82.251	-0.2289					50	21	4	0	0	0	0.32811	1	9845	9845		71.877	15.156	1	662690	+		60448	35219	42450	42511	65747	65747		952			-0.016560677747293084
PSIFHVLILNL	11	Unmodified	_PSIFHVLILNL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.59271240234375	3	422.592058	1264.75434	-0.0027145	-1.1471E-06	1.5578	0.00065831	1.5551	0.00065717	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	1.0371	1	5167	5167		28.577	5.1988	1	16177000			60449	8703	42451	42512	65748	65748					0.13255699396404452
PSIFHVLILNL	11	Unmodified	_PSIFHVLILNL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.593017578125	3	422.592058	1264.75434	0.1726	7.2939E-05	1.6943	0.00071598	1.8669	0.00078892	422.5926910721887	50.01	3.5693	49.73	48.973	52.543	-0.27977					269	94	5	0	0	0	1.017	1	5103	5103		33.039	1.4051	1	10812000			60450	8703	42451	42512	65749	65749					0.13255699396404452
PSIGQEGSYV	10	Unmodified	_PSIGQEGSYV_					0	0	0			REV__nc|ENSG00000105967|O14948-3|TFEC	REV__nc|ENSG00000105967|O14948-3|TFEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.26416015625	2	518.750921	1035.48729	-1.5186	-0.00078778	-2.1542	-0.0011175	-3.6728	-0.0019053	518.7496422957097	30.488	0.58171	30.488	30.176	30.758	0					24	13	2	0	0	0	0.03519	1	1946	1946		52.937	14.131	1	220440	+		60451	21580	42452	42513	65750	65750					-0.029034305530103666
PSIKSSTSSSD	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))PSIKSSTSSSD_					1	0	0		NAV1|p.G1563_T1565del|1|0.1|ENSG00000134369|chr1:201810644-201810652|CACGGGCAA/-|inframe_deletion	NAV1|p.G1563_T1565del|1|0.1|ENSG00000134369|chr1:201810644-201810652|CACGGGCAA/-|inframe_deletion	NAV1|p.G1563_T1565del|1|0.1|ENSG00000134369|chr1:201810644-201810652|CACGGGCAA/-|inframe_deletion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2672119140625	2	569.267133	1136.51971	1.542	0.0008778	-0.76699	-0.00043662	0.77499	0.00044118	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.58492	2	850	850;864		70.816	17.88	1	2894000			60452	18024	42453	42514	65751;65752	65751					-0.0430868794064736
PSILFQKV	8	Unmodified	_PSILFQKV_					0	0	0			REV__nc|ENSG00000117602|Q9UKA8-6|RCAN3	REV__nc|ENSG00000117602|Q9UKA8-6|RCAN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2661437988281	2	466.284203	930.553853	-0.81656	-0.00038075	3.6617	0.0017074	2.8451	0.0013266	466.2858016430466	46.394	0.51419	46.192	45.892	46.406	-0.20226					18	13	2	0	0	0	0.027866	1	4441	4441		18.324	0.95945	1	200520	+		60453	22361	42454	42515	65753	65753					0.08579849799571093
PSILQYQPN	9	Unmodified	_PSILQYQPN_					0	0	0		ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3115234375	2	530.277106	1058.53966	-0.4784	-0.00025369	0.24022	0.00012739	-0.23818	-0.0001263	530.2765662129372	60.66	0.24483	60.454	60.336	60.581	-0.20599					8	5	2	0	0	0	0.024457	1	6756	6756		37.159	0	1	114400			60454	7859	42455	42516	65754	65754					0.012731525806202626
PSIMLLIF	8	Unmodified	_PSIMLLIF_					0	0	0		ENST00000263026.9_1_16:22296162-22296357:+|nuORF	ENST00000263026.9_1_16:22296162-22296357:+|nuORF	ENST00000263026.9_1_16:22296162-22296357:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.2607727050781	2	467.277532	932.540511	0.96596	0.00045137	3.9876	0.0018633	4.9536	0.0023147	467.2790454744978	24.506	0.36723	24.585	24.41	24.777	0.078346					14	7	2	0	0	0	0.027866	1	1022	1022		20.482	0	1	43092			60455	11516	42456	42517	65755	65755					0.07154275695972956
PSIPIYGLR	9	Unmodified	_PSIPIYGLR_					0	0	0		ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799377441406	2	508.300384	1014.58622	-0.8108	-0.00041213	-1.4037	-0.00071348	-2.2145	-0.0011256	508.2997413262814	47.818	0.40603	47.878	47.522	47.929	0.059097					20	12	2	0	0	0	0.024506	1	4781	4781		10.866	0	1	799060			60456	2160	42457	42518	65756	65756					0.07950637202566213
PSIPSIPIKN	10	Unmodified	_PSIPSIPIKN_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3199462890625	2	533.318774	1064.623	0.22848	0.00012185	0.87445	0.00046636	1.1029	0.00058821	533.3193958870153	106.38	0.47508	106.38	106.2	106.68	0					30	14	3	0	0	0	1.0122	1	13647	13647		44.377	0	1	253890	+		60457	20332	42458	42519	65757	65757					0.09326889028466212
PSIPTDISTL	10	Unmodified	_PSIPTDISTL_					0	0	0		nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8125610351562	2	522.284597	1042.55464	-0.244	-0.00012744	3.4035	0.0017776	3.1595	0.0016501	522.787931168005	42.236	0.1708	42.262	42.152	42.323	0.026012					6	4	2	0	0	0	0.03519	1	3812	3812		26.693	4.733	1	95353			60458	7985	42459	42520	65758	65758					0.03506599657953302
PSIQRPFSR	9	Unmodified	_PSIQRPFSR_					0	0	0		ENST00000255641.12_1_19:1980544-1980727:+|nuORF	ENST00000255641.12_1_19:1980544-1980727:+|nuORF	ENST00000255641.12_1_19:1980544-1980727:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2677612304688	2	544.30399	1086.59343	-0.5585	-0.00030399	0.81769	0.00044507	0.25919	0.00014108	544.3038005572614	35.709	0.3051	35.511	35.403	35.708	-0.19829					13	8	2	0	0	0	0.024263	1	2727	2727		34.173	0	1	494800			60459	11390	42460	42521	65759	65759					0.053593698029771986
PSIRKFFA	8	Unmodified	_PSIRKFFA_					0	0	0		ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2684326171875	2	483.281995	964.549437	-0.15935	-7.7012E-05	0.67583	0.00032662	0.51648	0.00024961	483.2824430186879	46.666	0.3321	46.404	46.237	46.569	-0.26118					16	8	3	0	0	0	0.027866	1	4516	4516		26.796	13.837	1	654190			60460	5384	42461	42522	65760	65760					0.06574385376654845
PSIRQIANQ	9	Unmodified	_PSIRQIANQ_					0	0	0			REV__LRIG2|p.E300Q|1|0.17|ENSG00000198799|chr1:113095968-113095968|G/C|missense_variant	REV__LRIG2|p.E300Q|1|0.17|ENSG00000198799|chr1:113095968-113095968|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8154907226562	2	513.788173	1025.56179	-0.83035	-0.00042663	0.28293	0.00014537	-0.54742	-0.00028126	514.2908794840116	45.134	0.45094	44.985	44.697	45.148	-0.1488					13	12	2	0	0	0	0.024374	1	4309	4309		40.778	12.524	1	118650	+		60461	36324	42462	42523	65761	65761					0.05003377049024493
PSISFNKTI	9	Unmodified	_PSISFNKTI_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.782470703125	2	503.782025	1005.5495	0.2989	0.00015058	-0.12751	-6.4238E-05	0.17139	8.6341E-05	503.7818975797657	88.518	0.80729	88.518	88.212	89.02	0					34	17	3	0	0	0	0.16468	1	11160	11160		96.19	2.184	1	688160			60462	6516	42463	42524	65762	65762					0.04694340586001999
PSISFNKTI	9	Unmodified	_PSISFNKTI_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.782025	1005.5495	0.53494	0.00026949	-0.61001	-0.00030731	-0.075072	-3.782E-05	503.7817671914298	88.471	0.85039	88.444	88.009	88.859	-0.027664	-0.076488	-0.0002396	NaN	96.19	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673490			60463	6516	42463	42524							0.04694340586001999
PSISFNKTI	9	Unmodified	_PSISFNKTI_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.782025	1005.5495	0.55578	0.00027999	-0.35707	-0.00017988	0.19871	0.00010011	503.7818104840821	88.583	0.814	88.599	88.236	89.05	0.016083	0.07898	1.5258E-05	NaN	96.19	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642550			60464	6516	42463	42524							0.04694340586001999
PSISIPMVSC	10	Unmodified	_PSISIPMVSC_					0	0	0			REV__ENST00000519948.3_1_12:74933914-74934004:+|nuORF	REV__ENST00000519948.3_1_12:74933914-74934004:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2674560546875	2	517.256471	1032.49839	-0.82761	-0.00042808	2.0237	0.0010468	1.1961	0.00061867	517.2575880747281	30.868	0.90618	30.943	30.586	31.492	0.074314					53	21	4	0	0	0	0.03519	1	2003	2003		21.96	5.2549	1	276120	+		60465	34282	42464	42525	65763	65763					-0.01656067774706571
PSITLPPTFR	10	Unmodified	_PSITLPPTFR_					0	0	0		nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3	nc|ENSG00000021645|Q9Y4C0|NRXN3	nc|ENSG00000021645|Q9Y4C0|NRXN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8240966796875	2	564.824224	1127.63389	0.19347	0.00010928	0.31234	0.00017642	0.50581	0.00028569	564.8240843949924	102.11	0.64049	101.98	101.64	102.28	-0.12666					41	16	3	0	0	0	0.98754	1	12710	12710		47.657	1.6851	1	357960			60466	18038	42465	42526	65764	65764					0.07518291402743671
PSIVEAMEEDM	11	Unmodified	_PSIVEAMEEDM_					0	0	0		ENST00000564583.1_1_16:27455877-27457360:+|nuORF	ENST00000564583.1_1_16:27455877-27457360:+|nuORF	ENST00000564583.1_1_16:27455877-27457360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.5631103515625	3	417.514157	1249.52064	-0.28884	-0.0001206	4.3102	0.0017996	4.0213	0.001679	417.5156835807613	28.044	0.37537	28.125	27.832	28.208	0.080812					11	8	2	0	0	0	0.02477	1	1555	1555		35.178	7.5343	1	39732			60467	16894	42466	42527	65765	65765					-0.09413932887628107
PSKEDKKQA	9	Unmodified	_PSKEDKKQA_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;ACACB|p.S220Tfs*8|1|0.43|ENSG00000076555|chr12:109166866-109166866|G/-|frameshift_variant	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2859497070312	2	515.780013	1029.54547	-0.24517	-0.00012646	3.5052	0.0018079	3.26	0.0016814	515.78017629184	50.911	0.97892	50.762	50.425	51.404	-0.14916					70	26	4	0	0	0	0.72494	1	5333	5333		44.377	2.0391	1	3189100			60468	1585	42467	42528	65766	65766					0.03188251092274186
PSKEVKSTI	9	Unmodified	_PSKEVKSTI_					0	0	0			REV__ENST00000495739.1_1_3:21478408-21552461:-|nuORF	REV__ENST00000495739.1_1_3:21478408-21552461:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.30078125	2	494.787307	987.560061	1.0502	0.00051962	0.23758	0.00011755	1.2878	0.00063717	494.7869728456786	96.987	0.66252	96.987	96.484	97.147	-3.8147E-05					19	14	2	0	0	0	0.024374	1	12274	12274		40.778	0	1	29072	+		60469	24797	42468	42529	65767	65767					0.06578323240444206
PSKHYISVY	9	Unmodified	_PSKHYISVY_					0	0	0		ENSG00000095981|ENST00000437525|KCNK16;nc|ENSG00000095981|Q96T55|KCNK16	ENSG00000095981|ENST00000437525|KCNK16	ENSG00000095981|ENST00000437525|KCNK16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.309814453125	2	547.287474	1092.5604	-0.22158	-0.00012127	3.7704	0.0020635	3.5488	0.0019422	547.2879571640132	102.94	0.77139	102.81	102.32	103.09	-0.12783					27	17	3	0	0	0	0.024541	1	12841	12841		23.042	3.6825	1	98214			60470	2044	42469	42530	65768	65768					0.01781742960270094
PSKKELLVPTV	11	Unmodified	_PSKKELLVPTV_					0	0	0			REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8719482421875	2	605.873914	1209.73327	0.74452	0.00045108	-3.6438	-0.0022077	-2.8993	-0.0017566	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	1.0344	1	12244	12244		29.17	4.6509	1	1081300	+		60471	20188	42470	42531	65769	65769					0.13679689296850484
PSKKQMFQNT	10	Unmodified	_PSKKQMFQNT_					0	0	0			REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.80517578125	2	604.808248	1207.60194	-0.43907	-0.00026555	-3.3337	-0.0020162	-3.7727	-0.0022818	604.8060811076264	97.787	0.50703	97.785	97.59	98.097	-0.0020752					20	11	2	0	0	0	1.0545	1	12410	12410		38.754	3.6016	1	115680	+		60472	25455	42471	42532	65770	65770					0.006445556572998612
PSKKQMFQNT	10	Unmodified	_PSKKQMFQNT_					0	0	0			REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	604.808248	1207.60194	-1.1708	-0.0007081	-2.3934	-0.0014476	-3.5642	-0.0021557	605.3080480588654	97.835	0.56241	97.835	97.46	98.022	0	0.098282	0.001362	NaN	38.754	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110280	+		60473	25455	42471	42532							0.006445556572998612
PSKKQMFQNT	10	Unmodified	_PSKKQMFQNT_					0	0	0			REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	604.808248	1207.60194	0.023575	1.4258E-05	-3.5821	-0.0021665	-3.5586	-0.0021522	604.8060405349703	97.726	0.51761	97.735	97.461	97.979	0.0098038	-0.0014043	-7.5839E-05	NaN	38.754	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88579	+		60474	25455	42471	42532							0.006445556572998612
PSKKQMFQNT	10	Unmodified	_PSKKQMFQNT_					0	0	0			REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	604.808248	1207.60194	-0.43907	-0.00026555	-3.3337	-0.0020162	-3.7727	-0.0022818	604.8060811076264	97.787	0.50703	97.785	97.59	98.097	-0.0020752	0.04797	0.0002247	NaN	38.754	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115680	+		60475	25455	42471	42532							0.006445556572998612
PSKKQMFQNT	10	Unmodified	_PSKKQMFQNT_					0	0	0			REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	604.808248	1207.60194	0.22553	0.0001364	-3.9124	-0.0023663	-3.6869	-0.0022299	604.8058678810062	97.844	0.35145	97.707	97.468	97.82	-0.13671	-0.029385	-0.00047539	NaN	38.754	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60722	+		60476	25455	42471	42532							0.006445556572998612
PSKKQMFQNT	10	Unmodified	_PSKKQMFQNT_					0	0	0			REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	REV__nc|ENSG00000162571|Q6ZVT0-3|TTLL10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	604.808248	1207.60194	0.72412	0.00043795	-4.7994	-0.0029027	-4.0753	-0.0024648	605.3066819829687	97.745	0.26862	97.621	97.463	97.732	-0.12368	-0.11546	-0.0015483	NaN	38.754	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48360	+		60477	25455	42471	42532							0.006445556572998612
PSKKWVTL	8	Unmodified	_PSKKWVTL_					0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	MSMS	OPSCC_40_ClassI_Rep-2	5	479.7865905761719	2	479.789653	957.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.054	1	24.88	24.38	25.38	-0.17484								0	0	0	0.40904	1	1147	1147		65.803	2.4969	1		+		60478	20204	42472	42533	65771	65771					0.0842725217385123
PSKLCRHS	8	Unmodified	_PSKLCRHS_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.795166015625	2	464.245086	926.47562	-0.60922	-0.00028283	-3.3973	-0.0015772	-4.0065	-0.00186	464.24362943135304	34.621	1.0651	34.445	33.781	34.846	-0.17557					50	26	3	0	0	0	0.027866	1	2457	2457		12.959	0	1	562320			60479	1533	42473	42534	65772	65772					0.009440939426895056
PSKLFWTRHIL	11	Unmodified	_PSKLFWTRHIL_					0	0	0			REV__ENST00000307968.11_1_5:131007642-131007714:-|nuORF	REV__ENST00000307968.11_1_5:131007642-131007714:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.60772705078125	3	466.60659	1396.79794	0.67563	0.00031525	2.4993	0.0011662	3.175	0.0014815	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0371	1	12548	12548		28.577	9.3141	1	1258700	+		60480	30148	42474	42535	65773	65773					0.11541308893492896
PSKMTNKT	8	Unmodified	_PSKMTNKT_					0	0	0		ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.26605224609375	2	453.739302	905.464052	-0.63859	-0.00028975	-1.2214	-0.00055421	-1.86	-0.00084397	453.7389658640468	29.582	0.47296	29.337	28.967	29.44	-0.24524					12	10	2	0	0	0	0.027866	1	1772	1772		40.778	0	1	39754			60481	1703	42475	42536	65774	65774					0.007538521286846844
PSKMTNKT	8	Unmodified	_PSKMTNKT_					0	0	0		ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	453.739302	905.464052	-0.90361	-0.00041	0.76936	0.00034909	-0.13425	-6.0917E-05	453.7394424831635	29.577	0.48112	29.577	29.333	29.814	0	0.084319	0.00012492	NaN	40.778	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94423			60482	1703	42475	42536							0.007538521286846844
PSKMTNKT	8	Unmodified	_PSKMTNKT_					0	0	0		ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	ENSG00000081026|ENST00000307546|MAGI3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	453.739302	905.464052	-0.37154	-0.00016858	0.70667	0.00032065	0.33514	0.00015207	453.73944604445416	29.562	0.51174	29.565	29.24	29.751	0.0031357	0.072041	6.8035E-05	NaN	40.778	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103200			60483	1703	42475	42536							0.007538521286846844
PSKNKKIF	8	Unmodified	_PSKNKKIF_					0	0	0			REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2646179199219	2	481.295102	960.575651	-0.17509	-8.4269E-05	-0.038727	-1.8639E-05	-0.21382	-0.00010291	481.2947981361018	37.437	0.73931	37.469	37.149	37.889	0.032269					36	19	3	0	0	0	0.027866	1	3053	3053		25.45	0	1	390700	+		60484	37032	42476	42537	65775	65775					0.09378654548129362
PSKREALVL	9	Unmodified	_PSKREALVL_					0	0	0			REV__ENSG00000115548|ENST00000312912|KDM3A	REV__ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7926025390625	2	506.811116	1011.60768	-1.1303	-0.00057283	-1.5096	-0.0007651	-2.6399	-0.0013379	506.81052360741637	44.446	0.44181	44.446	44.215	44.657	0					18	12	2	0	0	0	0.022756	1	4213	4213		90.777	0	1	606620	+		60485	22212	42477	42538	65776	65776					0.10234022231270501
PSKRSKALN	9	Unmodified	_PSKRSKALN_					0	0	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.25311279296875	2	500.79854	999.582528	0.69762	0.00034937	-1.1113	-0.00055653	-0.41367	-0.00020716	500.79796702026914	95.774	0.75232	95.776	95.481	96.233	0.0020752					25	17	3	0	0	0	0.024313	1	12140	12140		69.628	23.655	1	115700	+		60486	25665	42478	42539	65777	65777					0.08271967428697735
PSKRSKALN	9	Unmodified	_PSKRSKALN_					0	0	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.79854	999.582528	0.13564	6.7929E-05	0.17514	8.7709E-05	0.31078	0.00015564	500.7987061127508	95.681	1.1627	95.544	94.938	96.101	-0.13689	-0.11797	-0.00029679	NaN	69.628	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136360	+		60487	25665	42478	42539							0.08271967428697735
PSKRSKALN	9	Unmodified	_PSKRSKALN_					0	0	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.79854	999.582528	0.61532	0.00030815	0.29935	0.00014991	0.91467	0.00045806	500.79872492447714	95.702	1.1055	95.58	95.247	96.352	-0.12251	-0.082743	-0.00017238	NaN	69.628	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200890	+		60488	25665	42478	42539							0.08271967428697735
PSKRSKALN	9	Unmodified	_PSKRSKALN_					0	0	0			REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	REV__UBXN7|p.R424Gfs*13|1|0.26|ENSG00000163960|chr3:196361882-196361882|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.79854	999.582528	-0.61399	-0.00030749	1.6004	0.0008015	0.98645	0.00049401	500.799219302043	95.799	1.1241	95.642	95.008	96.132	-0.15646	-0.020157	0.0011308	NaN	69.628	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173570	+		60489	25665	42478	42539							0.08271967428697735
PSKSNRPELVL	11	Unmodified	_PSKSNRPELVL_					0	0	0			REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.89544677734375	3	413.906705	1238.69829	-0.91944	-0.00038056	-1.2654	-0.00052374	-2.1848	-0.0009043	414.2402617215966	27.144	0.21888	27.226	27.1	27.319	0.081293					7	5	2	0	0	0	0.024801	1	1394	1394		17.833	7.2463	1	57271	+		60490	36791	42479	42540	65778	65778					0.08848446488900663
PSKVSAINS	9	Unmodified	_PSKVSAINS_					0	0	0			REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	REV__nc|ENSG00000085274|Q9NPC7-3|MYNN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.230224609375	2	451.750724	901.486896	-0.30406	-0.00013736	0.50022	0.00022597	0.19616	8.8616E-05	451.75078957604273	26.04	1.1266	26.017	25.567	26.694	-0.023088					50	26	3	0	0	0	0.024374	1	1327	1327		32.812	3.6424	1	594710	+		60491	20744	42480	42541	65779	65779					0.032211945178119095
PSKYWPVR	8	Unmodified	_PSKYWPVR_					0	0	0		ENST00000330871.3_1_17:76353271-76353499:-|nuORF	ENST00000330871.3_1_17:76353271-76353499:-|nuORF	ENST00000330871.3_1_17:76353271-76353499:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.25	2	516.784902	1031.55525	-1.0058	-0.00051978	-3.318	-0.0017147	-4.3238	-0.0022345	516.7831063657277	29.206	1.6109	29.285	28.979	30.59	0.078344					72	39	3	0	0	0	0.027866	1	1892	1892		25.45	4.9683	1	1208700			60492	12335	42481	42542	65780	65780					0.04073483888305418
PSLACFLL	8	Unmodified	_PSLACFLL_					0	0	0		ENST00000532090.2_1_11:65545117-65545246:-|nuORF	ENST00000532090.2_1_11:65545117-65545246:-|nuORF	ENST00000532090.2_1_11:65545117-65545246:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.915283203125	2	432.238407	862.462261	-0.039173	-1.6932E-05	4.4508	0.0019238	4.4116	0.0019069	432.2401488945767	32.141	0.62917	32.204	31.799	32.428	0.062885					19	15	2	0	0	0	0.027866	1	2179	2179		20.482	0	1	89362			60493	16279	42482	42543	65781	65781					0.02552843110743197
PSLARMWF	8	Unmodified	_PSLARMWF_					0	0	0			REV__ENST00000534797.5_1_11:502881-503247:-|nuORF	REV__ENST00000534797.5_1_11:502881-503247:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2596130371094	2	504.260205	1006.50586	0.59243	0.00029874	-2.18	-0.0010993	-1.5876	-0.00080054	504.2591277377638	22.785	0.73843	22.583	22.33	23.069	-0.20199					53	15	6	0	0	0	0.845	1	802	802		55.504	2.5675	1	3541600	+		60494	34655	42483	42544	65782	65782					0.0028645260787243387
PSLDQLLSF	9	Unmodified	_PSLDQLLSF_					0	0	0			REV__ENSG00000187773|ENST00000343998|DIPK1C	REV__ENSG00000187773|ENST00000343998|DIPK1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.27398681640625	2	510.274032	1018.53351	0.20219	0.00010317	-0.3911	-0.00019957	-0.18891	-9.6397E-05	510.27380347284304	76.758	1.4273	76.49	76.008	77.436	-0.26807					89	34	5	0	0	0	0.28753	1	9148	9148		77.318	3.0625	1	7648200	+		60495	27971	42484	42545	65783	65783					0.024986343491036678
PSLDRRPL	8	Unmodified	_PSLDRRPL_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2800598144531	2	477.279983	952.545414	0.39396	0.00018803	0.73533	0.00035096	1.1293	0.00053899	477.27978371362417	21.039	0.63971	21.11	20.761	21.4	0.070444					25	12	3	0	0	0	0.80469	1	578	578		58.782	0.97068	1	111940	+		60496	34863	42485	42546	65784	65784					0.06724295882941078
PSLDRRPL	8	Unmodified	_PSLDRRPL_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.279983	952.545414	-0.14069	-6.7148E-05	1.4964	0.00071422	1.3557	0.00064707	477.27994851901036	21.12	0.68893	21.12	20.753	21.441	0	0.060432	0.0010338	NaN	58.782	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107510	+		60497	34863	42485	42546							0.06724295882941078
PSLDRRPL	8	Unmodified	_PSLDRRPL_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	477.279983	952.545414	-0.058303	-2.7827E-05	1.9388	0.00092533	1.8805	0.0008975	477.2800512743717	21.17	0.54048	21.08	20.863	21.403	-0.090092	0.020825	0.0014561	NaN	58.782	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122110	+		60498	34863	42485	42546							0.06724295882941078
PSLDRRPL	8	Unmodified	_PSLDRRPL_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.279983	952.545414	0.56778	0.00027099	-0.90223	-0.00043061	-0.33445	-0.00015962	477.2791875275118	21.119	0.4353	20.942	20.678	21.113	-0.17721	-0.11724	-0.0012558	NaN	58.782	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88042	+		60499	34863	42485	42546							0.06724295882941078
PSLDRRPL	8	Unmodified	_PSLDRRPL_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.279983	952.545414	-1.2015	-0.00057345	0.83962	0.00040073	-0.36188	-0.00017272	477.28015393480473	21.257	0.4433	21.044	20.822	21.266	-0.2128	-0.014659	0.00040687	NaN	58.782	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83130	+		60500	34863	42485	42546							0.06724295882941078
PSLEEIEHLNW	11	Unmodified	_PSLEEIEHLNW_					0	0	0		ENST00000407916.2_1_7:55002433-55002823:+|nuORF	ENST00000407916.2_1_7:55002433-55002823:+|nuORF	ENST00000407916.2_1_7:55002433-55002823:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.22503662109375	3	456.226103	1365.65648	0.63678	0.00029052	-3.2132	-0.001466	-2.5764	-0.0011754	456.2245993260556	51.834	0.81583	51.65	51.337	52.153	-0.18404					66	21	5	0	0	0	0.84303	1	5353	5353		55.084	4.2927	1	1729100			60501	13755	42486	42547	65785	65785					-0.01172153990296465
PSLFDMLL	8	Unmodified	_PSLFDMLL_					0	0	0			REV__nc|ENSG00000188761|Q5TBC7-2|BCL2L15	REV__nc|ENSG00000188761|Q5TBC7-2|BCL2L15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7666931152344	2	468.248972	934.48339	-0.53673	-0.00025132	-2.5778	-0.0012071	-3.1145	-0.0014584	468.24776680340153	36.57	1.2836	36.528	35.366	36.649	-0.042458					40	34	2	0	0	0	0.027866	1	2915	2915		20.482	0	1	119390	+		60502	28060	42487	42548	65786	65786					0.013528084195968404
PSLFINFF	8	Unmodified	_PSLFINFF_					0	0	0			REV__ENSG00000158315|ENST00000372990|RHBDL2	REV__ENSG00000158315|ENST00000372990|RHBDL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7287902832031	2	492.763104	983.511654	-0.16303	-8.0335E-05	-1.4924	-0.00073538	-1.6554	-0.00081571	492.762271404289	63.159	0.85868	62.975	62.788	63.647	-0.18386					32	21	2	0	0	0	0.027866	1	7166	7166		35.201	0	1	628100	+		60503	25189	42488	42549	65787	65787					0.019238743911728307
PSLFSSRIL	9	Unmodified	_PSLFSSRIL_					0	0	0		ENSG00000153933|ENST00000284061|DGKE;DGKE|p.K392R|1|0.19|ENSG00000153933|chr17:56856588-56856588|A/G|missense_variant	ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8441467285156	2	510.297842	1018.58113	0.031231	1.5937E-05	-3.2061	-0.0016361	-3.1748	-0.0016201	510.2962607325219	76.994	0.93612	77.008	76.168	77.104	0.013504					25	22	2	0	0	0	0.024292	1	9410	9410		49.442	0	1	354210			60504	6368	42489	42550	65788	65788					0.07258333339962064
PSLGNIWPK	9	Unmodified	_PSLGNIWPK_					0	0	0		ENST00000435881.6_1_17:40723892-40724087:+|nuORF	ENST00000435881.6_1_17:40723892-40724087:+|nuORF	ENST00000435881.6_1_17:40723892-40724087:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8229064941406	2	506.284734	1010.55492	-0.75051	-0.00037997	3.909	0.0019791	3.1585	0.0015991	506.2863952966602	60.514	0.5312	60.26	60.053	60.584	-0.25373					20	12	2	0	0	0	0.024263	1	6723	6723		51.335	0	1	92245			60505	14272	42490	42551	65789	65789					0.05006064168469493
PSLGVKGLAI	10	Unmodified	_PSLGVKGLAI_					0	0	0			REV__ENST00000566655.1_1_16:70820075-70820303:-|nuORF	REV__ENST00000566655.1_1_16:70820075-70820303:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8037414550781	2	477.80276	953.590967	-0.06748	-3.2242E-05	0.15013	7.1733E-05	0.08265	3.949E-05	477.8026391352436	52.339	0.74773	52.431	52.04	52.788	0.091938					52	18	4	0	0	0	0.91678	1	5538	5538		52.937	0.63753	1	1812000	+		60506	35305	42491	42552	65790	65790					0.11231521345325746
PSLIPIPLNK	10	Unmodified	_PSLIPIPLNK_					0	0	0			REV__ENST00000532832.5_1_11:102218051-102219410:+|nuORF	REV__ENST00000532832.5_1_11:102218051-102219410:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.3103637695312	2	546.344792	1090.67503	-0.75769	-0.00041396	-1.7761	-0.00097036	-2.5338	-0.0013843	546.8401893229936	103.59	0.43363	103.59	103.38	103.82	0					17	10	3	0	0	0	0.03519	1	13268	13268		20.947	8.7401	1	24602	+		60507	34587	42492	42553	65791	65791					0.13332052442228814
PSLKNFLLCC	10	Unmodified	_PSLKNFLLCC_					0	0	0		ENST00000500853.1_1_8:23083357-23087480:+|nuORF	ENST00000500853.1_1_8:23083357-23087480:+|nuORF	ENST00000500853.1_1_8:23083357-23087480:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.7703247070312	2	569.293388	1136.57222	0.031888	1.8154E-05	-0.50344	-0.00028661	-0.47156	-0.00026845	569.2930862971646	72.575	0.59491	72.298	71.988	72.582	-0.2769					32	13	3	0	0	0	0.03519	1	8495	8495		21.96	0	1	328350			60508	15650	42493	42554	65792	65792					0.0093990038760694
PSLKQWPSRVP	11	Unmodified	_PSLKQWPSRVP_					0	0	0		ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.864501953125	2	647.866954	1293.71936	-2.4069	-0.0015594	0.45765	0.00029649	-1.9493	-0.0012629	647.8666069198308	110.9	0.41189	110.78	110.54	110.95	-0.12624					35	14	3	0	0	0	1.0718	1	13613	13613		19.104	0.84144	1	276500			60509	901	42494	42555	65793	65793					0.08424456588409157
PSLKQWPSRVP	11	Unmodified	_PSLKQWPSRVP_					0	0	0		ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	647.866954	1293.71936	1.3128	0.00085053	-3.5121	-0.0022753	-2.1992	-0.0014248	647.8647898167155	110.55	0.24784	110.54	110.38	110.62	-0.011299	-0.11627	-0.0025616	NaN	19.104	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	795650			60510	901	42494	42555							0.08424456588409157
PSLLDRRP	8	Unmodified	_PSLLDRRP_					0	0	0		ENST00000392011.6_1_2:235860763-235943560:+|nuORF;ENST00000446904.5_3_2:235890272-235943560:+|nuORF;ENST00000444916.5_3_2:235887388-235943560:+|nuORF;ENST00000409212.5_1_2:235887401-235943560:+|nuORF	ENST00000392011.6_1_2:235860763-235943560:+|nuORF	ENST00000392011.6_1_2:235860763-235943560:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2829895019531	2	477.279983	952.545414	0.39396	0.00018803	0.73533	0.00035096	1.1293	0.00053899	477.27978371362417	21.039	0.63971	21.11	20.761	21.4	0.070444					25	12	3	0	0	0	0.89627	1	566	566		51.335	5.3835	1	111940			60511	13404	42495	42556	65794	65794					0.06724295882941078
PSLLPGSKS	9	Unmodified	_PSLLPGSKS_					0	0	0		ENST00000380334.6_1_X:15721534-15721606:+|nuORF	ENST00000380334.6_1_X:15721534-15721606:+|nuORF	ENST00000380334.6_1_X:15721534-15721606:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.29180908203125	2	443.255643	884.496732	-0.84076	-0.00037267	4.0795	0.0018083	3.2388	0.0014356	443.2564008760687	27.805	1.1945	27.637	27.317	28.511	-0.16816					36	28	2	0	0	0	0.024427	1	1578	1578		19.997	3.5236	1	147560			60512	13308	42496	42557	65795	65795					0.04986382523202337
PSLLPPSKM	9	Oxidation (M)	_PSLLPPSKM(Oxidation (M))_		PSLLPPSKM(1)		PSLLPPSKM(130)	0	0	1			REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2715759277344	2	493.272978	984.531403	-0.76709	-0.00037839	-2.931	-0.0014458	-3.6981	-0.0018242	493.27137735145527	64.627	1.0311	64.393	64.021	65.052	-0.2345					63	25	4	0	0	0	0.049585	2	7348	7348;7360		128.86	30.232	1	3071700	+		60513	25967	42497	42558	65796;65797	65796		769			0.03851882339642998
PSLLPPSKM	9	Oxidation (M)	_PSLLPPSKM(Oxidation (M))_					0	0	1			REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	493.272978	984.531403	-0.76709	-0.00037839	-2.931	-0.0014458	-3.6981	-0.0018242	493.27137735145527	64.627	1.0311	64.393	64.021	65.052	-0.2345	-0.0055226	0.00026315	NaN	128.86	63	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3071700	+		60514	25967	42497	42558				769			0.03851882339642998
PSLLYGVKV	9	Unmodified	_PSLLYGVKV_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.300537109375	2	488.29731	974.580068	0.003458	1.6885E-06	-0.97764	-0.00047738	-0.97418	-0.00047569	488.29670611033094	98.084	0.66524	98.084	97.814	98.479	0					29	15	2	0	0	0	0.50848	1	12552	12552		58.782	0.97068	1	295200			60515	1512	42498	42559	65798	65798					0.09176118971049618
PSLLYGVKV	9	Unmodified	_PSLLYGVKV_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	488.29731	974.580068	0.30204	0.00014749	-1.0596	-0.00051742	-0.7576	-0.00036994	488.2966471978305	97.982	0.92247	97.992	97.684	98.607	0.010231	-0.0050565	0.00024819	NaN	58.782	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258200			60516	1512	42498	42559							0.09176118971049618
PSLLYGVKV	9	Unmodified	_PSLLYGVKV_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.29731	974.580068	0.53454	0.00026102	-1.3873	-0.00067742	-0.85278	-0.00041641	488.2964038319117	98.004	0.68086	97.867	97.423	98.104	-0.13625	-0.13002	-7.1817E-05	NaN	58.782	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110790			60517	1512	42498	42559							0.09176118971049618
PSLLYGVKV	9	Unmodified	_PSLLYGVKV_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.29731	974.580068	1.2106	0.00059112	-2.5465	-0.0012434	-1.3359	-0.0006523	488.295981368148	97.997	0.35813	97.873	97.553	97.911	-0.12413	-0.12477	-0.0012038	NaN	58.782	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110540			60518	1512	42498	42559							0.09176118971049618
PSLMDLSHA	9	Unmodified	_PSLMDLSHA_					0	0	0			REV__nc|ENSG00000100433|P57789|KCNK10	REV__nc|ENSG00000100433|P57789|KCNK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2926025390625	2	485.73676	969.458967	-1.3327	-0.00064733	1.9181	0.0009317	0.58543	0.00028436	485.7370093734561	55.519	0.37532	55.617	55.332	55.707	0.098015					15	9	2	0	0	0	0.024405	1	6056	6056		27.882	4.8398	1	79787	+		60519	21119	42499	42560	65799	65799					-0.02698451733942875
PSLNIVKTPF	10	Unmodified	_PSLNIVKTPF_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8106689453125	2	558.326599	1114.63865	0.26693	0.00014904	-0.34544	-0.00019287	-0.078501	-4.3829E-05	558.3260779874188	89.121	0.92647	89.099	88.525	89.451	-0.021645					42	21	3	0	0	0	0.03519	1	11255	11255		13.454	2.5885	1	203660	+		60520	28819	42500	42561	65800	65800					0.08591175545507213
PSLNWEIGV	9	Unmodified	_PSLNWEIGV_					0	0	0			REV__ENSG00000131174|ENST00000650309|COX7B	REV__ENSG00000131174|ENST00000650309|COX7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7682800292969	2	507.766374	1013.5182	0.61006	0.00030977	2.19	0.001112	2.8001	0.0014218	507.7674470469566	59.088	0.99476	59.088	58.75	59.745	0					93	26	5	0	0	0	0.56934	1	6710	6710		54.776	5.3348	1	24336000	+		60521	23193	42501	42562	65801	65801					0.01197767551900597
PSLPAAPQGR	10	Unmodified	_PSLPAAPQGR_					0	0	0			REV__ENST00000445323.6_2_X:149931146-149931284:+|nuORF	REV__ENST00000445323.6_2_X:149931146-149931284:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25921630859375	2	497.277441	992.540328	-0.040829	-2.0304E-05	4.1393	0.0020584	4.0984	0.0020381	497.279933457671	20.721	0.1953	20.553	20.444	20.639	-0.16774					5	3	2	0	0	0	0.03519	1	580	580		19.997	0	1	27812	+		60522	32607	42502	42563	65802	65802					0.04375992020334252
PSLPAWPSL	9	Unmodified	_PSLPAWPSL_					0	0	0		ENST00000561294.5_1_1:150940168-150940330:-|nuORF	ENST00000561294.5_1_1:150940168-150940330:-|nuORF	ENST00000561294.5_1_1:150940168-150940330:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2393798828125	2	484.26601	966.517468	-0.49014	-0.00023736	-3.2471	-0.0015725	-3.7372	-0.0018098	484.264061472821	56.885	0.71161	56.981	56.717	57.429	0.095306					79	19	5	0	0	0	0.024405	1	6332	6332		44.117	0	1	3537400			60523	16823	42503	42564	65803	65803					0.03286972902856178
PSLPLSTKS	9	Unmodified	_PSLPLSTKS_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2721252441406	2	465.26875	928.522947	0.16817	7.8244E-05	-2.058	-0.00095752	-1.8898	-0.00087928	465.26773873394893	19.581	0.36837	19.581	19.463	19.831	0					17	7	3	0	0	0	0.024487	1	419	419		11.511	0	1	236010	+		60524	27060	42504	42565	65804	65804					0.05582651694658125
PSLPVCRFVED	11	Unmodified	_PSLPVCRFVED_					0	0	0			REV__ENST00000518542.1_1_8:19315287-19352580:-|nuORF	REV__ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.2639465332031	3	421.213029	1260.61726	-0.013332	-5.6155E-06	-2.9633	-0.0012482	-2.9766	-0.0012538	421.54632111607975	42.465	0.22867	42.235	42.065	42.294	-0.23029					6	5	2	0	0	0	0.024742	1	3799	3799		38.714	15.336	1	61800	+		60525	34239	42505	42566	65805	65805					-0.002625775455044277
PSLPVCRFVED	11	Unmodified	_PSLPVCRFVED_					0	0	0			REV__ENST00000518542.1_1_8:19315287-19352580:-|nuORF	REV__ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	421.213029	1260.61726	-0.3119	-0.00013138	3.4853	0.0014681	3.1734	0.0013367	421.2143319620144	42.458	0.23148	42.226	42.042	42.273	-0.23186	-0.0040674	0.0031984	NaN	38.714	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41213	+		60526	34239	42505	42566							-0.002625775455044277
PSLRRRQT	8	Unmodified	_PSLRRRQT_					0	0	0			REV__ENSG00000102119|ENST00000369842|EMD	REV__ENSG00000102119|ENST00000369842|EMD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.3019714355469	2	507.301781	1012.58901	-0.26049	-0.00013215	0.9038	0.0004585	0.6433	0.00032635	507.3031528811818	56.73	1.1472	56.827	56.397	57.544	0.097893					143	31	6	0	0	0	0.87148	1	6319	6319		53.351	0	1	26490000	+		60527	21289	42506	42567	65806	65806					0.08321905380091721
PSLRSSPGLG	10	Unmodified	_PSLRSSPGLG_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A;ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MSMS	OPSCC_39_ClassI_Rep-1	1	485.7692565917969	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.673	1	20.673	20.173	21.173	0								0	0	0	0.75565	1	567	567		45.972	3.5761	1				60528	1963	42507	42568	65807	65807					0.03836285783438598
PSLSCLYGPYF	11	Unmodified	_PSLSCLYGPYF_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.1986389160156	3	416.198609	1245.574	0.64379	0.00026795	-2.9409	-0.001224	-2.2971	-0.00095606	416.196839414205	20.705	0.39483	20.509	20.286	20.681	-0.19577					15	7	3	0	0	0	0.024748	1	587	587		37.508	4.6958	1	39235	+		60529	21331	42508	42569	65808	65808					-0.03896767322794403
PSLSLQWT	8	Unmodified	_PSLSLQWT_					0	0	0		ENST00000302243.11_1_16:70406206-70406689:+|nuORF	ENST00000302243.11_1_16:70406206-70406689:+|nuORF	ENST00000302243.11_1_16:70406206-70406689:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.24932861328125	2	466.247818	930.481082	1.4435	0.00067304	2.3649	0.0011026	3.8084	0.0017756	466.2488127539522	17.237	1.3929	17.083	16.856	18.249	-0.15403					45	27	2	0	0	0	0.845	1	175	175		55.504	2.5675	1	334490			60530	11950	42509	42570	65809	65809					0.013060960061352489
PSLSLSFHG	9	Unmodified	_PSLSLSFHG_					0	0	0		SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|1|1|sense	SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|1|1|sense	SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|1|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.9712219238281	2	472.745442	943.476331	-0.36017	-0.00017027	0.53425	0.00025257	0.17408	8.2298E-05	472.74554843698525	49.128	0.74729	48.946	48.558	49.305	-0.18206					30	19	2	0	0	0	0.024323	1	4929	4929		53.351	0	1	254990			60531	38002	42510	42571	65810	65810					0.0023321186339444466
PSLTKVTSI	9	Unmodified	_PSLTKVTSI_					0	0	0			REV__ENST00000492488.5_1_2:242641480-242651487:+|nuORF	REV__ENST00000492488.5_1_2:242641480-242651487:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2840576171875	2	473.2844	944.554247	-0.40604	-0.00019217	0.62187	0.00029432	0.21583	0.00010215	473.28458733739893	53.664	0.47886	53.467	53.201	53.68	-0.19739					42	13	4	0	0	0	0.014034	1	5628	5628		166.68	3.5276	1	4629500	+		60532	26255	42511	42572	65811	65811					0.079752247287729
PSLTSPVLR	9	Unmodified	_PSLTSPVLR_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.28839111328125	2	485.290017	968.565481	0.2133	0.00010351	-3.8434	-0.0018651	-3.6301	-0.0017616	485.28829372610755	18.064	2.2094	17.932	17.464	19.674	-0.13147					99	44	5	0	0	0	0.83071	1	241	241		37.159	1.5408	1	6599700			60533	10303	42512	42573	65812	65812					0.07994046822909695
PSLTSVNGF	9	Unmodified	_PSLTSVNGF_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.21978759765625	2	461.23745	920.460347	-0.21368	-9.8555E-05	3.9704	0.0018313	3.7567	0.0017327	461.2391671193632	59.974	0.89564	59.774	59.538	60.434	-0.20016					40	23	3	0	0	0	0.024021	1	6919	6919		49.442	18.938	1	257630			60534	9640	42513	42574	65813	65813					-0.0030649437351257802
PSLTYIGGFP	10	Unmodified	_PSLTYIGGFP_					0	0	0		ENST00000430373.1_1_1:112289271-112289442:+|nuORF	ENST00000430373.1_1_1:112289271-112289442:+|nuORF	ENST00000430373.1_1_1:112289271-112289442:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.8135986328125	2	526.276575	1050.5386	0.16263	8.5588E-05	0.85156	0.00044815	1.0142	0.00053374	526.2771747138831	85.359	0.74712	85.164	84.888	85.635	-0.19508					27	17	2	0	0	0	0.03519	1	10395	10395		60.972	0	1	175190			60535	14166	42514	42575	65814	65814					0.015349382117165078
PSLVAAARRA	10	Unmodified	_PSLVAAARRA_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2;nc|ENSG00000105520|Q96GM1|PLPPR2;ENST00000588360.1_1_19:11471945-11474676:+|nuORF	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2587585449219	2	506.306532	1010.59851	-0.30354	-0.00015368	-0.89785	-0.00045459	-1.2014	-0.00060827	506.3055884908284	25.183	0.73009	25.013	24.558	25.288	-0.17078					31	16	3	0	0	0	0.03519	1	1180	1180		14.865	3.3539	1	46957			60536	2688	42515	42576	65815	65815					0.09363673665586703
PSLVFRQERH	10	Unmodified	_PSLVFRQERH_					0	0	0			REV__ENST00000428457.1_1_7:47315602-47315764:-|nuORF	REV__ENST00000428457.1_1_7:47315602-47315764:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.72698974609375	3	423.566794	1267.67855	-0.7414	-0.00031403	0.66807	0.00028297	-0.073337	-3.1063E-05	423.5670629861733	34.75	0.75596	34.75	34.444	35.2	0					35	19	2	0	0	0	0.03519	1	2585	2585		26.063	6.0666	1	1235700	+		60537	32321	42516	42577	65816	65816					0.055421152687813446
PSLVKSLTLD	10	Unmodified	_PSLVKSLTLD_					0	0	0			REV__ENST00000482803.1_1_3:9799225-9799596:-|nuORF	REV__ENST00000482803.1_1_3:9799225-9799596:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2940063476562	2	536.816064	1071.61758	-0.16712	-8.9714E-05	0.037761	2.0271E-05	-0.12936	-6.9443E-05	536.8160208460567	63.42	0.50524	63.42	63.126	63.631	0					31	13	3	0	0	0	0.03519	1	7387	7387		35.152	6.0025	1	1202500	+		60538	33492	42517	42578	65817	65817					0.08463165446005405
PSLVLVFNR	9	Unmodified	_PSLVLVFNR_					0	0	0			REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.79931640625	2	522.813659	1043.61277	2.3701	0.0012391	-1.4164	-0.0007405	0.95376	0.00049864	522.8137135117764	19.528	0.24806	19.594	19.438	19.687	0.066195					7	4	2	0	0	0	0.024541	1	389	389		24.203	3.7209	1	47573	+		60539	19775	42518	42579	65818	65818					0.09270326093883341
PSLVSTVAPG	10	Unmodified	_PSLVSTVAPG_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2768859863281	2	464.260925	926.507297	-0.023061	-1.0706E-05	-0.21759	-0.00010102	-0.24065	-0.00011172	464.2607089810019	46.823	0.37968	46.823	46.623	47.003	0					14	9	2	0	0	0	0.03519	1	4671	4671		34.173	20.718	1	135130			60540	2625	42519	42580	65819	65819					0.041103651776211336
PSMAFKKP	8	Unmodified	_PSMAFKKP_					0	0	0		ENST00000481340.1_1_X:2832668-2835863:-|nuORF;nc|ENSG00000006756|P51689-2|ARSD	ENST00000481340.1_1_X:2832668-2835863:-|nuORF	ENST00000481340.1_1_X:2832668-2835863:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2686462402344	2	453.249306	904.484059	-0.20763	-9.4109E-05	4.4408	0.0020128	4.2332	0.0019187	453.2514239706486	21.449	0.48548	21.359	21.059	21.545	-0.090094					18	9	3	0	0	0	0.027866	1	629	629		68.485	33.284	1	28645			60541	15227	42520	42581	65820	65820					0.02799647859308152
PSMGYCIL	8	Unmodified	_PSMGYCIL_					0	0	0		nc|ENSG00000133687|Q8IUR5-3|TMTC1;ENST00000553189.5_1_12:29689066-29935873:-|nuORF;nc|ENSG00000133687|Q8IUR5-2|TMTC1;nc|ENSG00000133687|Q8IUR5-1|TMTC1;ENSG00000133687|ENST00000539277|TMTC1	nc|ENSG00000133687|Q8IUR5-3|TMTC1	nc|ENSG00000133687|Q8IUR5-3|TMTC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78790283203125	2	442.20625	882.397946	0.24976	0.00011044	4.4292	0.0019586	4.679	0.0020691	442.20808136975614	42.895	0.36248	42.755	42.558	42.921	-0.13929					11	9	2	0	0	0	0.027866	1	3950	3950		14.664	0	1	242500			60542	4724	42521	42582	65821	65821					-0.047956800377164654
PSMHLSSKYG	10	Unmodified	_PSMHLSSKYG_					0	0	0		ENSG00000162814|ENST00000366933|SPATA17	ENSG00000162814|ENST00000366933|SPATA17	ENSG00000162814|ENST00000366933|SPATA17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.7485961914062	2	553.768591	1105.52263	-0.36785	-0.0002037	-1.5874	-0.00087908	-1.9553	-0.0010828	554.2685023068954	36.438	0.38082	36.233	36.021	36.402	-0.20518					13	9	2	0	0	0	0.03519	1	2834	2834		35.152	3.6222	1	67498			60543	6995	42522	42583	65822	65822					-0.02591091296835657
PSMKNIVKL	9	Oxidation (M)	_PSM(Oxidation (M))KNIVKL_		PSM(1)KNIVKL		PSM(64)KNIVKL	0	0	1			REV__ENSG00000198130|ENST00000359678|HIBCH	REV__ENSG00000198130|ENST00000359678|HIBCH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.304931640625	2	523.307352	1044.60015	-1.0067	-0.00052681	-2.5067	-0.0013118	-3.5134	-0.0018386	523.305940710666	66.911	0.8201	66.911	66.63	67.45	0					56	19	4	0	0	0	0.42604	1	7974	7974		64.207	12.872	1	4321100	+		60544	28387	42523	42584	65823	65823		838			0.07963546639348351
PSMKNIVKL	9	Oxidation (M)	_PSM(Oxidation (M))KNIVKL_		PSM(1)KNIVKL		PSM(62)KNIVKL	0	0	1			REV__ENSG00000198130|ENST00000359678|HIBCH	REV__ENSG00000198130|ENST00000359678|HIBCH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3005981445312	2	523.307352	1044.60015	-0.49753	-0.00026036	-3.3661	-0.0017615	-3.8636	-0.0020218	523.3054421349055	67.266	0.76349	66.978	66.707	67.47	-0.28834					58	18	4	0	0	0	0.45795	1	8006	8006		62.107	12.083	1	4348200	+		60545	28387	42523	42584	65824	65824		838			0.07963546639348351
PSMKNIVKL	9	Oxidation (M)	_PSM(Oxidation (M))KNIVKL_					0	0	1			REV__ENSG00000198130|ENST00000359678|HIBCH	REV__ENSG00000198130|ENST00000359678|HIBCH	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.307352	1044.60015	0.11115	5.8167E-05	-3.9404	-0.0020621	-3.8293	-0.0020039	523.305126005483	67.268	0.49378	67.02	66.792	67.286	-0.24839	0.038706	-0.00076388	NaN	64.207	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565170	+		60546	28387	42523	42584				838			0.07963546639348351
PSMKNIVKL	9	Oxidation (M)	_PSM(Oxidation (M))KNIVKL_					0	0	1			REV__ENSG00000198130|ENST00000359678|HIBCH	REV__ENSG00000198130|ENST00000359678|HIBCH	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.307352	1044.60015	-0.27674	-0.00014482	-3.4293	-0.0017946	-3.706	-0.0019394	523.3053922115748	67.225	0.40713	67.001	66.778	67.185	-0.22374	0.01975	-0.00022893	NaN	64.207	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489650	+		60547	28387	42523	42584				838			0.07963546639348351
PSMKNIVKL	9	Oxidation (M)	_PSM(Oxidation (M))KNIVKL_					0	0	1			REV__ENSG00000198130|ENST00000359678|HIBCH	REV__ENSG00000198130|ENST00000359678|HIBCH	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.307352	1044.60015	-0.35499	-0.00018577	-3.3214	-0.0017381	-3.6764	-0.0019239	523.3052380433661	67.204	0.44847	66.966	66.796	67.245	-0.23814	-0.015176	-0.00011605	NaN	64.207	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568860	+		60548	28387	42523	42584				838			0.07963546639348351
PSMPAKVISV	10	Unmodified	_PSMPAKVISV_					0	0	0		nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.79296875	2	514.794078	1027.5736	0.032585	1.6775E-05	-3.1453	-0.0016192	-3.1127	-0.0016024	514.7923132904441	72.019	1.2814	71.744	71.433	72.715	-0.2751					77	30	4	0	0	0	0.78438	1	8416	8416		61.691	4.9702	1	2308800			60549	9363	42524	42585	65825	65825					0.06091857747992435
PSNAHETW	8	Unmodified	_PSNAHETW_					0	0	0			REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.78790283203125	2	471.209224	940.403895	-0.027603	-1.3007E-05	3.4132	0.0016083	3.3856	0.0015953	471.21058592611007	23.045	1.5882	22.984	22.097	23.685	-0.060862					43	35	2	0	0	0	0.027866	1	941	941		44.531	16.277	1	40630	+		60550	27819	42525	42586	65826	65826					-0.06869122210207479
PSNAHETW	8	Unmodified	_PSNAHETW_					0	0	0			REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.209224	940.403895	0.046211	2.1775E-05	3.5463	0.0016711	3.5926	0.0016928	471.2107361914785	23.051	1.8933	23.051	21.63	23.523	0	0.033828	5.0231E-05	NaN	44.531	57	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47746	+		60551	27819	42525	42586							-0.06869122210207479
PSNLPQLQNL	10	Unmodified	_PSNLPQLQNL_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3092041015625	2	562.308938	1122.60332	0.14969	8.4173E-05	3.3598	0.0018892	3.5095	0.0019734	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.31896	1	11064	11064		107.01	8.3781	1	3232300			60552	10119	42526	42587	65827	65827					0.04692513017721467
PSNLPQLQNL	10	Unmodified	_PSNLPQLQNL_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3102416992188	2	562.308938	1122.60332	0.47833	0.00026897	3.0527	0.0017165	3.531	0.0019855	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.69662	1	11042	11042		67.494	3.9598	1	3090500			60553	10119	42526	42587	65828	65828					0.04692513017721467
PSNLSPIEDA	10	Unmodified	_PSNLSPIEDA_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant;PCLO|p.S2108*|1|0.22|ENSG00000186472|chr7:82954630-82954630|G/-|frameshift_variant;BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	nc|ENSG00000186472|Q9Y6V0-6|PCLO;BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7568359375	2	521.756204	1041.49785	-0.88944	-0.00046407	1.9327	0.0010084	1.0433	0.00054435	521.7571257260016	25.884	0.78477	25.721	25.414	26.199	-0.16331					35	21	3	0	0	0	1.0122	1	1236	1236		44.377	3.599	1	1054300			60554	9552;194	42527	42588	65829	65829					-0.021234478985888927
PSNSCRCHV	9	2 Carbamidomethyl (C)	_PSNSC(Carbamidomethyl (C))RC(Carbamidomethyl (C))HV_	PSNSC(1)RC(1)HV		PSNSC(59)RC(59)HV		0	2	0			REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF	REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.738525390625	2	558.737299	1115.46005	-0.43918	-0.00024539	2.5303	0.0014138	2.0911	0.0011684	558.7385532067375	60.851	1.2132	60.851	60.582	61.796	0					74	31	4	0	0	0	0.50848	1	7010	7010		58.782	7.4465	1	5997000	+		60555	30920	42528	42589	65830	65830	404;405				-0.09306560636673566
PSNSCRCHV	9	2 Carbamidomethyl (C)	_PSNSC(Carbamidomethyl (C))RC(Carbamidomethyl (C))HV_	PSNSC(1)RC(1)HV		PSNSC(59)RC(59)HV		0	2	0			REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF	REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.7384643554688	2	558.737299	1115.46005	-0.75086	-0.00041953	2.7843	0.0015557	2.0335	0.0011362	558.7386867080197	60.793	1.0247	60.864	60.566	61.59	0.071125					70	26	4	0	0	0	0.50848	1	6941	6941		58.782	11.125	1	5795500	+		60556	30920	42528	42589	65831	65831	404;405				-0.09306560636673566
PSNSCRCHV	9	2 Carbamidomethyl (C)	_PSNSC(Carbamidomethyl (C))RC(Carbamidomethyl (C))HV_	PSNSC(1)RC(1)HV		PSNSC(59)RC(59)HV		0	2	0			REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF	REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.73876953125	2	558.737299	1115.46005	-0.78762	-0.00044007	2.9901	0.0016707	2.2024	0.0012306	558.7388371422732	61.314	0.73743	61.056	60.809	61.547	-0.25725					42	17	4	0	0	0	0.50848	1	6834	6834		58.782	9.3404	1	1905300	+		60557	30920	42528	42589	65832	65832	404;405				-0.09306560636673566
PSNWRVALA	9	Unmodified	_PSNWRVALA_					0	0	0			REV__ENSG00000250799|ENST00000653904|PRODH2	REV__ENSG00000250799|ENST00000653904|PRODH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.307861328125	2	507.279983	1012.54541	-0.74978	-0.00038035	0.71862	0.00036454	-0.031164	-1.5809E-05	507.2805528829081	43.515	0.32406	43.278	43.061	43.385	-0.23736					13	8	2	0	0	0	0.024209	1	3975	3975		47.657	1.7054	1	394580	+		60558	29030	42529	42590	65833	65833					0.039642958829290365
PSPAAPPAAAT	11	Unmodified	_PSPAAPPAAAT_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MSMS	OPSCC_39_ClassI_Rep-2	2	475.74871826171875	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.47	1	100.48	99.983	100.98	0.010117								0	0	0	1.2149	1	12819	12819		30.318	3.5216	1				60559	9069	42530	42591	65834	65834					0.010131945177818125
PSPAILSHPT	10	Unmodified	_PSPAILSHPT_					0	0	0		ENST00000579192.5_1_17:8198393-8198576:-|nuORF	ENST00000579192.5_1_17:8198393-8198576:-|nuORF	ENST00000579192.5_1_17:8198393-8198576:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8106384277344	2	510.279649	1018.54475	0.1949	9.9456E-05	2.042	0.001042	2.2369	0.0011414	510.28000258473645	49.233	0.36045	49.233	49.039	49.399	0					16	9	2	0	0	0	0.03519	1	5044	5044		40.778	22.454	1	216360			60560	17138	42531	42592	65835	65835					0.03621456443238458
PSPAILSHPT	10	Unmodified	_PSPAILSHPT_					0	0	0		ENST00000579192.5_1_17:8198393-8198576:-|nuORF	ENST00000579192.5_1_17:8198393-8198576:-|nuORF	ENST00000579192.5_1_17:8198393-8198576:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.279649	1018.54475	-1.5903	-0.00081148	5.2086	0.0026579	3.6184	0.0018464	510.28198430687974	49.151	0.25628	49.226	49.096	49.352	0.074196	-0.0035529	0.001298	NaN	25.574	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224580			60561	17138	42531	42592							0.03621456443238458
PSPEPGGLSVR	11	Unmodified	_PSPEPGGLSVR_					0	0	0		ENST00000467826.5_1_9:130570554-130576503:+|nuORF	ENST00000467826.5_1_9:130570554-130576503:+|nuORF	ENST00000467826.5_1_9:130570554-130576503:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2952880859375	2	548.293288	1094.57202	-0.17387	-9.5334E-05	3.5434	0.0019428	3.3696	0.0018475	548.2954263427797	19.621	2.2207	19.621	19.317	21.537	0					119	45	5	0	0	0	0.9728	1	443	443		42.864	4.0581	1	7603900			60562	14854	42532	42593	65836	65836					0.02851939983634111
PSPFLGLIP	9	Unmodified	_PSPFLGLIP_					0	0	0			REV__ENST00000434116.6_1_15:65903738-65903822:+|nuORF	REV__ENST00000434116.6_1_15:65903738-65903822:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2684631347656	2	470.778754	939.542954	0.0046986	2.212E-06	-1.3505	-0.00063577	-1.3458	-0.00063356	470.7769016648639	67.138	0.60252	66.857	66.672	67.274	-0.28148					19	14	2	0	0	0	0.024386	1	8017	8017		25.45	0	1	156820	+		60563	32415	42533	42594	65837	65837					0.07076447425288279
PSPGKKTHLE	10	Unmodified	_PSPGKKTHLE_					0	0	0			REV__ENST00000278882.8_1_20:29623179-29633907:+|nuORF	REV__ENST00000278882.8_1_20:29623179-29633907:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2786865234375	2	547.303655	1092.59276	-1.2514	-0.00068489	-3.6465	-0.0019957	-4.8979	-0.0026806	547.802015356387	31.192	0.42501	31.192	31.003	31.428	0					23	9	3	0	0	0	0.03519	1	2054	2054		25.574	0	1	80477	+		60564	29868	42534	42595	65838	65838					0.0501653036328662
PSPHGSLAATL	11	Unmodified	_PSPHGSLAATL_					0	0	0			REV__nc|ENSG00000013725|P30203-6|CD6	REV__nc|ENSG00000013725|P30203-6|CD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7950439453125	2	525.782556	1049.55056	-1.7464	-0.00091825	-3.7473	-0.0019702	-5.4937	-0.0028885	525.7810087753589	36.178	0.33898	36.178	35.924	36.263	0					11	8	2	0	0	0	0.024747	1	2850	2850		24.519	0	1	171280	+		60565	19962	42535	42596	65839	65839					0.027765549548803392
PSPHWTLY	8	Unmodified	_PSPHWTLY_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000182578|P07333-2|CSF1R;ENST00000502660.5_1_5:149456698-149465990:-|nuORF	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2919616699219	2	500.747985	999.481417	0.11032	5.5241E-05	-2.5356	-0.0012697	-2.4252	-0.0012144	500.7459103558961	45.912	0.48058	45.816	45.597	46.078	-0.096653					23	12	3	0	0	0	0.027866	1	4362	4362		19.36	0	1	230200			60566	9145	42536	42597	65840	65840					-0.018344842740020795
PSPKDVVQLVL	11	Unmodified	_PSPKDVVQLVL_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.856689453125	2	597.858264	1193.70197	-1.6739	-0.0010008	-1.798	-0.001075	-3.4719	-0.0020757	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	0.96599	1	11872	11872		44.377	6.5657	1	4454900	+		60567	23463	42537	42598	65841	65841					0.11287116262769814
PSPKPHAS	8	Unmodified	_PSPKPHAS_					0	0	0		nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	nc|ENSG00000137478|O94868-2|FCHSD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.71875	2	410.719227	819.423902	0.44315	0.00018201	-1.4011	-0.00057547	-0.95797	-0.00039345	410.7185615601089	96.027	1.7726	95.89	95.331	97.104	-0.1367					105	40	4	0	0	0	1.0574	1	11818	11818		23.042	2.5607	1	2186500			60568	5126	42538	42599	65842	65842					0.006966735204287033
PSPKPSICRC	10	Unmodified	_PSPKPSICRC_					0	0	0			REV__ENST00000178640.9_1_15:67835290-67835413:+|nuORF	REV__ENST00000178640.9_1_15:67835290-67835413:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	544.2756958007812	2	544.272986	1086.53142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.949	1	16.695	16.195	17.195	-0.25378								0	0	0	0.77833	1	100	100		14.137	0.68308	1		+		60569	29290	42539	42600	65843	65843					-0.008384409319887709
PSPLLALN	8	Unmodified	_PSPLLALN_					0	0	0			REV__ENST00000415142.1_2_2:99771951-99772854:+|nuORF	REV__ENST00000415142.1_2_2:99771951-99772854:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.1512451171875	2	412.747453	823.480354	0.077414	3.1953E-05	-3.1448	-0.001298	-3.0673	-0.001266	412.74601579481475	81.679	0.68304	81.549	81.217	81.9	-0.13075					35	16	3	0	0	0	0.027866	1	10117	10117		18.324	0	1	391480	+		60570	31647	42540	42601	65844	65844					0.06155301357080134
PSPLSLLLL	9	Unmodified	_PSPLSLLLL_					0	0	0		ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	ENSG00000139540|ENST00000454355|SLC39A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.8076171875	2	476.807511	951.600469	0.29453	0.00014043	-0.04089	-1.9497E-05	0.25364	0.00012094	476.80726373773	102.57	0.51749	102.4	102.2	102.72	-0.17178					27	11	3	0	0	0	0.6504	1	12737	12737		49.442	0	1	500120			60571	5343	42541	42602	65845	65845					0.12273289630866202
PSPPKKKEPV	10	Unmodified	_PSPPKKKEPV_					0	0	0			REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8300170898438	2	553.832049	1105.64954	0.28505	0.00015787	-4.1617	-0.0023049	-3.8767	-0.002147	553.8296167290418	101.48	0.89046	101.36	101.07	101.96	-0.12576					50	21	4	0	0	0	1.1295	1	12604	12604		26.063	4.1035	1	571900	+		60572	23883	42542	42603	65846	65846					0.10094577919812764
PSPPYLGLL	9	Unmodified	_PSPPYLGLL_					0	0	0		ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	ENSG00000047230|ENST00000359276|CTPS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7524108886719	2	478.776211	955.537869	0.10072	4.8224E-05	0.030278	1.4496E-05	0.131	6.2721E-05	478.77631263450627	33.4	0.41716	33.4	33.321	33.739	0					13	11	2	0	0	0	0.024412	1	2390	2390		24.203	0	1	94050			60573	1098	42543	42604	65847	65847					0.058321435626680795
PSPQLSVSR	9	Unmodified	_PSPQLSVSR_					0	0	0			REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.7928161621094	2	485.769448	969.524344	-0.74223	-0.00036055	-3.4155	-0.0016591	-4.1577	-0.0020197	485.76794852301043	83.305	1.9366	83.305	82.321	84.258	0					72	44	2	0	0	0	0.024261	1	10444	10444		54.776	1.4249	1	154970	+		60574	33552	42544	42605	65848	65848					0.03836285783427229
PSPRALFVAE	10	Unmodified	_PSPRALFVAE_					0	0	0			REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF	REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.802001953125	2	543.800749	1085.58694	-0.84096	-0.00045731	3.4607	0.0018819	2.6197	0.0014246	543.8024217066045	56.828	1.1808	56.828	56.351	57.532	0					87	32	4	0	0	0	0.69662	1	6352	6352		67.494	3.2864	1	10205000	+		60575	29821	42545	42606	65849	65849					0.04757431851612637
PSPRALFVAE	10	Unmodified	_PSPRALFVAE_					0	0	0			REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF	REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8010864257812	2	543.800749	1085.58694	-0.98126	-0.00053361	3.2999	0.0017945	2.3187	0.0012609	543.80250044111	56.703	1.0714	56.801	56.397	57.468	0.097893					67	29	3	0	0	0	0.69662	1	6254	6254		67.494	4.1874	1	11152000	+		60576	29821	42545	42606	65850	65850					0.04757431851612637
PSPRATTPK	9	Unmodified	_PSPRATTPK_					0	0	0		ENST00000457389.6_1_6:28109795-28112201:+|nuORF	ENST00000457389.6_1_6:28109795-28112201:+|nuORF	ENST00000457389.6_1_6:28109795-28112201:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2928161621094	2	477.771991	953.529429	-0.62413	-0.00029819	0.56839	0.00027156	-0.055738	-2.663E-05	477.772294229684	46.452	0.56168	46.3	46.099	46.661	-0.15156					27	15	2	0	0	0	0.024447	1	4633	4633		32.812	8.6097	1	357220			60577	14610	42546	42607	65851	65851					0.0508058964603606
PSPTLFLPSL	10	Unmodified	_PSPTLFLPSL_					0	0	0		ENST00000467699.5_1_17:7605498-7605885:+|nuORF;ENST00000471973.6_1_17:7605498-7606165:+|nuORF	ENST00000467699.5_1_17:7605498-7605885:+|nuORF	ENST00000467699.5_1_17:7605498-7605885:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.23876953125	2	536.307875	1070.6012	-2.431	-0.0013038	-3.06	-0.0016411	-5.491	-0.0029449	536.3052751581533	60.199	0.41313	60.278	60.088	60.501	0.078884					14	10	2	0	0	0	0.03519	1	6836	6836		64.207	0	1	126210			60578	14850	42547	42608	65852	65852					0.06872084279916635
PSPTNRNAP	9	Unmodified	_PSPTNRNAP_					0	0	0			REV__nc|ENSG00000108924|Q16534-2|HLF	REV__nc|ENSG00000108924|Q16534-2|HLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7738037109375	2	477.243598	952.472643	0.9316	0.0004446	-4.4263	-0.0021124	-3.4947	-0.0016678	477.2412314517435	69.65	0.66293	69.357	69.01	69.673	-0.29292					30	16	2	0	0	0	0.023181	1	8335	8335		71.296	15.791	1	219880	+		60579	21769	42548	42609	65853	65853					-0.005494579104833974
PSPTNRNAP	9	Unmodified	_PSPTNRNAP_					0	0	0			REV__nc|ENSG00000108924|Q16534-2|HLF	REV__nc|ENSG00000108924|Q16534-2|HLF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.77386474609375	2	477.243598	952.472643	-0.25692	-0.00012261	-3.4909	-0.001666	-3.7478	-0.0017886	477.24171917465804	69.464	0.82006	69.48	69.014	69.834	0.015129					40	20	3	0	0	0	0.023817	1	8237	8237		71.296	15.791	1	291800	+		60580	21769	42548	42609	65854	65854					-0.005494579104833974
PSPWEMML	8	Unmodified	_PSPWEMML_					0	0	0		ATP6AP1|p.Q394E|1|0.16|ENSG00000071553|chrX:154435482-154435482|C/G|missense_variant	ATP6AP1|p.Q394E|1|0.16|ENSG00000071553|chrX:154435482-154435482|C/G|missense_variant	ATP6AP1|p.Q394E|1|0.16|ENSG00000071553|chrX:154435482-154435482|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.72271728515625	2	495.724806	989.43506	-0.0075562	-3.7458E-06	-4.2702	-0.0021169	-4.2778	-0.0021206	495.7225990570361	47.576	1.0591	47.576	47.252	48.311	0					89	31	5	0	0	0	0.65272	1	4798	4798		71.378	4.9486	1	7931300			60581	158	42549	42610	65855	65855					-0.06008008491949113
PSPWLWPAL	9	Unmodified	_PSPWLWPAL_					0	0	0			REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2696533203125	2	533.789653	1065.56475	-1.0466	-0.00055868	-4.3183	-0.0023051	-5.365	-0.0028638	533.7864589922038	82.997	0.46835	83.024	82.874	83.342	0.026558					17	10	2	0	0	0	0.024294	1	10308	10308		45.952	15.634	1	136640	+		60582	36988	42550	42611	65856	65856					0.034592521738204596
PSPWLWPAL	9	Unmodified	_PSPWLWPAL_					0	0	0			REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.789653	1065.56475	0.3951	0.0002109	-5.7693	-0.0030796	-5.3742	-0.0028687	533.7860311802033	83.169	0.86469	82.958	82.443	83.308	-0.21159	-0.016236	-0.00061601	NaN	45.952	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226550	+		60583	36988	42550	42611							0.034592521738204596
PSPWLWPAL	9	Unmodified	_PSPWLWPAL_					0	0	0			REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.789653	1065.56475	-0.054455	-2.9068E-05	-5.592	-0.0029849	-5.6464	-0.003014	533.786096960713	83.105	0.46928	82.936	82.776	83.246	-0.16915	-0.038128	-0.00042671	NaN	45.952	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242900	+		60584	36988	42550	42611							0.034592521738204596
PSPWLWPAL	9	Unmodified	_PSPWLWPAL_					0	0	0			REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	REV__nc|ENSG00000181240|Q8N5S1-2|SLC25A41	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.789653	1065.56475	-0.51403	-0.00027438	-4.9341	-0.0026338	-5.4481	-0.0029082	533.7866004530886	83.116	0.68803	82.978	82.61	83.298	-0.1386	0.0040838	0.00027563	NaN	45.952	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198760	+		60585	36988	42550	42611							0.034592521738204596
PSPYAFSPVI	10	Unmodified	_PSPYAFSPVI_					0	0	0		ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7839965820312	2	539.2844	1076.55425	-1.0614	-0.00057242	-0.012826	-6.917E-06	-1.0743	-0.00057934	539.785447657754	29.131	0.70409	29.209	28.942	29.646	0.078344					56	17	5	0	0	0	0.03519	1	1741	1741		27.882	0	1	1007800			60586	9512	42551	42612	65857	65857					0.01903224728744135
PSPYLRPR	8	Unmodified	_PSPYLRPR_					0	0	0		ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	ENST00000568500.1_1_16:30709080-30709953:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2908020019531	2	493.282526	984.550499	1.2444	0.00061385	-0.15709	-7.749E-05	1.0873	0.00053636	493.28230927127834	20.291	0.44417	20.36	20.119	20.563	0.068901					13	8	2	0	0	0	0.027866	1	490	490		47.916	31.442	1	42823			60587	16982	42552	42613	65858	65858					0.05760599745565287
PSQALPQQL	9	Unmodified	_PSQALPQQL_					0	0	0		ENST00000492381.5_1_22:20909161-20940988:+|nuORF;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;nc|ENSG00000099917|Q96RN5-3|MED15	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.271240234375	2	491.271824	980.529095	-0.27754	-0.00013635	0.24081	0.00011831	-0.036723	-1.8041E-05	491.27158704437113	33.796	1.299	33.796	32.79	34.09	0					58	34	3	0	0	0	0.19099	1	2491	2491		90.37	13.052	1	3327500			60588	2097	42553	42614	65859	65859					0.03805169926192775
PSQALPQQL	9	Unmodified	_PSQALPQQL_					0	0	0		ENST00000492381.5_1_22:20909161-20940988:+|nuORF;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;nc|ENSG00000099917|Q96RN5-3|MED15	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2713317871094	2	491.271824	980.529095	-0.45949	-0.00022574	0.9548	0.00046907	0.49531	0.00024333	491.27171556007704	33.619	1.1837	33.625	32.776	33.959	0.0066261					64	31	3	0	0	0	0.26966	1	2452	2452		79.713	2.395	1	3777300			60589	2097	42553	42614	65860	65860					0.03805169926192775
PSQALPQQL	9	Unmodified	_PSQALPQQL_					0	0	0		ENST00000492381.5_1_22:20909161-20940988:+|nuORF;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;nc|ENSG00000099917|Q96RN5-3|MED15	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2716064453125	2	491.271824	980.529095	-0.0079638	-3.9124E-06	0.70339	0.00034556	0.69543	0.00034164	491.27154358880944	33.597	1.5249	33.654	32.571	34.096	0.056568					70	39	3	0	0	0	0.082191	2	2382	2382;2406		116.9	7.6193	1	3308500			60590	2097	42553	42614	65861;65862	65861					0.03805169926192775
PSQDLLHVK	9	Unmodified	_PSQDLLHVK_					0	0	0		ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7931518554688	2	518.792924	1035.57129	1.0044	0.0005211	-1.5653	-0.00081205	-0.56081	-0.00029095	518.7921775319962	63.978	1.2779	63.978	63.666	64.944	0					108	34	5	0	0	0	0.56934	1	7569	7569		54.776	1.8396	1	27682000			60591	16758	42554	42615	65863	65863					0.05493145334571636
PSQDLLHVK	9	Unmodified	_PSQDLLHVK_					0	0	0		ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	ENST00000558711.1_2_15:33192152-33192383:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7929077148438	2	518.792924	1035.57129	1.0772	0.00055883	-1.7842	-0.00092562	-0.70702	-0.00036679	518.7920795068602	63.983	1.2482	64.029	63.688	64.937	0.045502					109	33	5	0	0	0	0.5973	1	7479	7479		52.937	0	1	32761000			60592	16758	42554	42615	65864	65864					0.05493145334571636
PSQEELQTT	9	Unmodified	_PSQEELQTT_					0	0	0		nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP	nc|ENSG00000154175|Q7Z7G0|ABI3BP	nc|ENSG00000154175|Q7Z7G0|ABI3BP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7952270507812	2	516.745836	1031.47712	-0.053939	-2.7873E-05	1.2337	0.0006375	1.1797	0.00060963	516.7464349494439	24.059	1.2096	23.844	23.554	24.764	-0.2151					54	27	3	0	0	0	0.024457	1	1012	1012		21.96	0	1	2143000			60593	6389	42555	42616	65865	65865					-0.03736038278248088
PSQEELQTT	9	Unmodified	_PSQEELQTT_					0	0	0		nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP	nc|ENSG00000154175|Q7Z7G0|ABI3BP	nc|ENSG00000154175|Q7Z7G0|ABI3BP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.795166015625	2	516.745836	1031.47712	1.9561	0.0010108	-0.75858	-0.00039199	1.1976	0.00061884	516.7454484938703	23.917	0.61841	23.736	23.495	24.114	-0.18089					45	13	4	0	0	0	0.024457	1	969	969		29.15	9.1528	1	2301800			60594	6389	42555	42616	65866	65866					-0.03736038278248088
PSQGNLCPVF	10	Unmodified	_PSQGNLCPVF_					0	0	0		ENST00000254351.8_1_2:20400654-20400771:-|nuORF	ENST00000254351.8_1_2:20400654-20400771:-|nuORF	ENST00000254351.8_1_2:20400654-20400771:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2557983398438	2	531.257859	1060.50117	-0.28406	-0.00015091	-3.5689	-0.001896	-3.853	-0.0020469	531.2555789468593	28.37	1.079	28.451	28.208	29.287	0.080812					63	26	4	0	0	0	0.88896	1	1590	1590		54.776	0	1	1277400			60595	11378	42556	42617	65867	65867					-0.026664763255666912
PSQGQVAGAL	10	Unmodified	_PSQGQVAGAL_					0	0	0		VSIG2|p.R241Q|1|0.57|ENSG00000019102|chr11:124748519-124748519|C/T|missense_variant	VSIG2|p.R241Q|1|0.57|ENSG00000019102|chr11:124748519-124748519|C/T|missense_variant	VSIG2|p.R241Q|1|0.57|ENSG00000019102|chr11:124748519-124748519|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2503356933594	2	464.248349	926.482145	-0.57574	-0.00026729	4.2785	0.0019863	3.7028	0.001719	464.2503925053204	47.929	1.9482	47.929	47.56	49.508	0					193	56	6	0	0	0	0.48123	1	4918	4918		90.37	2.6155	1	137570000			60596	38146	42557	42618	65868	65868					0.01596310375032317
PSQKHSKKALK	11	Unmodified	_PSQKHSKKALK_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.378662109375	2	626.380229	1250.7459	0.33644	0.00021074	-1.282	-0.00080303	-0.94557	-0.00059229	626.3792889018249	104.56	1.023	104.39	104.02	105.04	-0.16791					95	33	5	0	0	0	1.0501	1	12967	12967		28.081	7.1346	1	2470500			60597	5705	42558	42619	65869	65869					0.1305614547973164
PSQKTVVVE	9	Unmodified	_PSQKTVVVE_					0	0	0		TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant;nc|ENSG00000092203|O94842-3|TOX4;nc|ENSG00000092203|O94842-2|TOX4;ENSG00000092203|ENST00000448790|TOX4;TOX4|p.A308Dfs*25|1|0.16|ENSG00000092203|chr14:21492539-21492539|C/-|frameshift_variant	TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.75079345703125	2	493.779482	985.544411	-0.58615	-0.00028943	0.54618	0.00026969	-0.039968	-1.9735E-05	493.77958866747537	45.661	0.47942	45.51	45.309	45.789	-0.15157					24	13	2	0	0	0	0.024457	1	4418	4418		29.15	0	1	830270			60598	1986	42559	42620	65870	65870					0.05106036723384477
PSQMEKLR	8	Unmodified	_PSQMEKLR_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7659912109375	2	494.765852	987.51715	-0.13501	-6.68E-05	-0.13194	-6.5281E-05	-0.26696	-0.00013208	494.765734084459	42.286	1.2456	42.154	41.753	42.998	-0.13219					53	35	2	0	0	0	0.44658	1	3867	3867		90.777	0.1758	1	5967300			60599	9693	42560	42621	65871	65871					0.022892299113664194
PSQMIRKQLF	10	Unmodified	_PSQMIRKQLF_					0	0	0		ENST00000425839.1_1_6:30436931-30437120:+|nuORF	ENST00000425839.1_1_6:30436931-30437120:+|nuORF	ENST00000425839.1_1_6:30436931-30437120:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.2258605957031	3	416.569147	1246.68561	-0.2037	-8.4853E-05	3.7256	0.001552	3.5219	0.0014671	416.570396989807	25.048	0.21776	24.873	24.733	24.95	-0.17484					6	4	2	0	0	0	0.03519	1	1135	1135		27.047	12.961	1	14331			60600	14071	42561	42622	65872	65872					0.0721371182501116
PSQMRYPP	8	Unmodified	_PSQMRYPP_					0	0	0			REV__ENST00000570130.1_1_3:195677865-195677907:-|nuORF	REV__ENST00000570130.1_1_3:195677865-195677907:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.77862548828125	2	488.23947	974.464386	-0.99718	-0.00048686	-3.3687	-0.0016447	-4.3659	-0.0021316	488.23776369859723	24.119	0.70116	24.072	23.741	24.442	-0.047146					30	15	3	0	0	0	0.027866	1	1052	1052		45.952	3.4775	1	68061	+		60601	35387	42562	42623	65873	65873					-0.02386728151452644
PSQMRYPP	8	Unmodified	_PSQMRYPP_					0	0	0			REV__ENST00000570130.1_1_3:195677865-195677907:-|nuORF	REV__ENST00000570130.1_1_3:195677865-195677907:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.23947	974.464386	-0.0463	-2.2605E-05	-6.677	-0.00326	-6.7233	-0.0032826	488.2357600914713	23.901	0.47783	23.686	23.344	23.822	-0.2151	-0.19294	-0.002569	NaN	42.396	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25061	+		60602	35387	42562	42623							-0.02386728151452644
PSQPLLIEQV	10	Unmodified	_PSQPLLIEQV_					0	0	0			REV__ENST00000551223.5_1_12:53689351-53690320:+|nuORF	REV__ENST00000551223.5_1_12:53689351-53690320:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.3114013671875	2	562.321514	1122.62847	0.38935	0.00021894	4.0723	0.0022899	4.4616	0.0025089	562.3236000131151	87.634	0.84482	87.498	87.262	88.107	-0.13613					53	20	4	0	0	0	0.03519	1	10644	10644		94.409	32.718	1	630250	+		60603	34927	42563	42624	65874	65874					0.07206567820298915
PSQPLLIEQV	10	Unmodified	_PSQPLLIEQV_					0	0	0			REV__ENST00000551223.5_1_12:53689351-53690320:+|nuORF	REV__ENST00000551223.5_1_12:53689351-53690320:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.321514	1122.62847	-0.26916	-0.00015135	4.9612	0.0027898	4.692	0.0026384	562.3240702537121	87.735	0.88493	87.556	87.28	88.164	-0.17875	0.012307	0.00042843	NaN	94.409	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	851420	+		60604	34927	42563	42624							0.07206567820298915
PSQPVKNGTGP	11	Unmodified	_PSQPVKNGTGP_					0	0	0		nc|ENSG00000062194|Q86WP2-4|GPBP1;nc|ENSG00000062194|Q86WP2-3|GPBP1;ENSG00000062194|ENST00000506184|GPBP1;nc|ENSG00000062194|Q86WP2-2|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2853393554688	2	541.285463	1080.55637	-0.84008	-0.00045473	0.32536	0.00017611	-0.51472	-0.00027861	541.2856013547815	22.616	1.1568	22.43	21.858	23.015	-0.18539					50	24	3	0	0	0	0.48498	1	798	798		77.318	10.888	1	997860			60605	1249	42564	42625	65875	65875					0.019316534665676954
PSQSESEPE	9	Unmodified	_PSQSESEPE_					0	0	0		nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13136054-13190160:-|nuORF	nc|ENSG00000107186|O75970-5|MPDZ	nc|ENSG00000107186|O75970-5|MPDZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.75079345703125	2	495.206544	988.398534	-0.61618	-0.00030514	1.5897	0.00078723	0.97352	0.00048209	495.2071584851305	45.397	1.3043	45.248	44.455	45.759	-0.1488					86	37	3	0	0	0	0.024457	1	4418	4418		37.159	10.466	1	1094500			60606	2831	42565	42626	65876	65876					-0.09612890583309763
PSQSLSNSF	9	Unmodified	_PSQSLSNSF_					0	0	0			REV__nc|ENSG00000077238|P24394-3|IL4R	REV__nc|ENSG00000077238|P24394-3|IL4R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.268310546875	2	483.729989	965.445425	-0.27683	-0.00013391	0.27826	0.0001346	0.0014371	6.9515E-07	483.7299764286108	46.349	0.83004	46.087	45.739	46.569	-0.26118					50	21	4	0	0	0	0.024288	1	4467	4467		52.937	0	1	1783500	+		60607	20584	42566	42627	65877	65877					-0.03867986241516519
PSQSPKPEV	9	Unmodified	_PSQSPKPEV_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.7559814453125	2	484.756007	967.497461	0.0078442	3.8025E-06	-0.20656	-0.00010013	-0.19872	-9.6329E-05	484.7557995730847	45.682	0.94189	45.585	44.945	45.887	-0.096649					48	26	3	0	0	0	0.17822	1	4369	4369		93.195	2.8256	1	3771200			60608	4628	42567	42628	65878	65878					0.01241177172244079
PSQTTVLVVIC	11	Carbamidomethyl (C)	_PSQTTVLVVIC(Carbamidomethyl (C))_	PSQTTVLVVIC(1)		PSQTTVLVVIC(88)		0	1	0		ENSG00000132661|ENST00000254998|NXT1	ENSG00000132661|ENST00000254998|NXT1	ENSG00000132661|ENST00000254998|NXT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.83203125	2	608.833931	1215.65331	-0.10076	-6.1344E-05	-3.5472	-0.0021596	-3.6479	-0.002221	608.8317039697384	81.633	1.0574	81.439	81.131	82.188	-0.19334					70	24	4	0	0	0	0.32544	1	9853	9853		87.696	32.974	1	2596600			60609	4633	42568	42629	65879	65879	59				0.05410879631358512
PSQVGLKAL	9	Unmodified	_PSQVGLKAL_					0	0	0			REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.779285	911.544017	-0.26063	-0.00011905	0.48815	0.00022298	0.22752	0.00010393	456.77979652903576	23.113	0.38534	23.052	22.844	23.229	-0.06086					17	8	3	0	0	0	0.019502	1	865	865		111.65	40.353	1	89222	+		60610	25680	42569	42630	65880	65880					0.08470661794183343
PSRASIVPLV	10	Unmodified	_PSRASIVPLV_					0	0	0			REV__ENSG00000142235|ENST00000600059|LMTK3	REV__ENSG00000142235|ENST00000600059|LMTK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8195190429688	2	519.818941	1037.62333	0.12518	6.5073E-05	-0.67539	-0.00035108	-0.55021	-0.00028601	519.8186456583804	71.282	0.99471	71.282	70.909	71.904	0					100	25	5	0	0	0	1.1088	1	8686	8686		31.53	2.3803	1	28736000	+		60611	24148	42570	42631	65881	65881					0.10602308748298128
PSRCGLDPRA	10	Unmodified	_PSRCGLDPRA_					0	0	0			REV__ENST00000487582.1_2_12:56226726-56226987:+|nuORF	REV__ENST00000487582.1_2_12:56226726-56226987:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2695922851562	2	536.271832	1070.52911	-1.7619	-0.00094485	-1.9277	-0.0010338	-3.6896	-0.0019786	536.2707303163928	29.513	0.87632	29.513	29.26	30.137	0					56	21	4	0	0	0	0.42812	1	1821	1821		95.815	2.6719	1	978250	+		60612	33612	42571	42632	65882	65882					-0.003331533454684177
PSRCRQAL	8	Unmodified	_PSRCRQAL_					0	0	0		ENST00000584717.1_1_17:80059670-80064175:-|nuORF	ENST00000584717.1_1_17:80059670-80064175:-|nuORF	ENST00000584717.1_1_17:80059670-80064175:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	465.7520446777344	2	465.750536	929.486519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.762	1	29.762	29.262	30.262	0								0	0	0	0.47049	1	1853	1853		57.811	2.3071	1				60613	17213	42572	42633	65883	65883					0.01895496316956269
PSRCRQAL	8	Unmodified	_PSRCRQAL_					0	0	0		ENST00000584717.1_1_17:80059670-80064175:-|nuORF	ENST00000584717.1_1_17:80059670-80064175:-|nuORF	ENST00000584717.1_1_17:80059670-80064175:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7536315917969	2	465.750536	929.486519	-0.43853	-0.00020425	-0.20584	-9.5868E-05	-0.64437	-0.00030012	465.75073531590664	29.58	1.695	29.583	28.713	30.408	0.0031357					95	41	5	0	0	0	0.81662	1	1850	1850		57.811	5.5121	1	15425000			60614	17213	42572	42633	65884	65884					0.01895496316956269
PSREELLL	8	Unmodified	_PSREELLL_					0	0	0		ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7770080566406	2	478.7742	955.533846	0.8739	0.0004184	-0.5392	-0.00025816	0.33469	0.00016024	478.7737715874096	67.74	1.2346	67.74	67.326	68.56	0					58	31	3	0	0	0	0.6248	1	8096	8096		73.975	2.679	1	2849800			60615	17460	42573	42634	65885	65885					0.05430054068960999
PSREFVLTL	9	Unmodified	_PSREFVLTL_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8167724609375	2	531.303124	1060.5917	0.19463	0.00010341	-1.7018	-0.00090419	-1.5072	-0.00080078	531.3025019684104	85.414	0.38103	85.219	85.088	85.469	-0.19508					10	8	2	0	0	0	0.024427	1	10346	10346		26.693	3.6504	1	63100	+		60616	28823	42574	42635	65886	65886					0.06382315994369492
PSREFVLTL	9	Unmodified	_PSREFVLTL_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.303124	1060.5917	-0.67009	-0.00035602	0.4345	0.00023085	-0.23559	-0.00012517	531.3033183949345	85.457	0.45859	85.399	85.145	85.603	-0.05761	0.046982	5.4072E-05	NaN	26.693	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297710	+		60617	28823	42574	42635							0.06382315994369492
PSRGAPSPSV	10	Unmodified	_PSRGAPSPSV_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.77386474609375	2	477.753798	953.493044	-0.27738	-0.00013252	1.5112	0.00072198	1.2338	0.00058946	477.75444407793105	69.211	0.22161	69.226	69.094	69.316	0.015129					8	5	2	0	0	0	0.03519	1	8237	8237		69.628	0	1	70939	+		60618	22985	42575	42636	65887	65887					0.014437127493351909
PSRKLSYKL	9	Unmodified	_PSRKLSYKL_					0	0	0			REV__ENST00000343979.5_1_19:12298828-12299077:+|nuORF	REV__ENST00000343979.5_1_19:12298828-12299077:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.277587890625	2	546.332216	1090.64988	-0.42761	-0.00023362	-0.66476	-0.00036318	-1.0924	-0.0005968	546.3305122246874	62.18	0.19939	61.966	61.813	62.012	-0.21375					6	4	2	0	0	0	0.024527	1	6990	6990		18.262	4.808	1	40093	+		60619	30676	42576	42637	65888	65888					0.10817997639651367
PSRKLVAL	8	Unmodified	_PSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.2906188964844	2	442.28982	882.565087	-0.88043	-0.00038941	0.7467	0.00033026	-0.13373	-5.9148E-05	442.29001219749324	44.621	1.1243	44.377	43.975	45.099	-0.2444					64	29	4	0	0	0	0.34573	2	4156	4156;4167		104.75	19.387	1	3579400			60620	4312	42577	42638	65889;65890	65889					0.11910671893701874
PSRKLVAL	8	Unmodified	_PSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.2904357910156	2	442.28982	882.565087	-0.67475	-0.00029844	0.36818	0.00016284	-0.30657	-0.00013559	442.2898630199598	44.554	0.86802	44.342	44.081	44.949	-0.21156					61	22	4	0	0	0	0.36844	2	4145	4145;4157		101.6	13.961	1	5134100			60621	4312	42577	42638	65891;65892	65891					0.11910671893701874
PSRKLVAL	8	Unmodified	_PSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.28982	882.565087	-0.87266	-0.00038597	0.76439	0.00033808	-0.10826	-4.7883E-05	442.29007552977583	44.362	0.53332	44.362	44.089	44.622	0	-0.001774	0.00010317	NaN	104.75	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989950			60622	4312	42577	42638							0.11910671893701874
PSRKLVAL	8	Unmodified	_PSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.28982	882.565087	-1.0147	-0.0004488	0.98751	0.00043677	-0.027217	-1.2038E-05	442.2901301220772	44.519	0.60121	44.374	44.031	44.632	-0.14471	0.01042	0.00030054	NaN	104.75	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	727990			60623	4312	42577	42638							0.11910671893701874
PSRKLVAL	8	Unmodified	_PSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	442.28982	882.565087	-0.18402	-8.1392E-05	0.35064	0.00015509	0.16662	7.3694E-05	442.28979774687997	44.36	0.6088	44.397	44.072	44.681	0.036903	0.033171	-0.00026282	NaN	104.75	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	820320			60624	4312	42577	42638							0.11910671893701874
PSRKLVAL	8	Unmodified	_PSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.28982	882.565087	-1.0824	-0.00047873	0.75437	0.00033365	-0.32802	-0.00014508	442.2900702324417	44.435	1.0127	44.33	44.03	45.043	-0.10468	-0.033497	9.4309E-05	NaN	104.75	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2799100			60625	4312	42577	42638							0.11910671893701874
PSRLARLKV	9	Unmodified	_PSRLARLKV_					0	0	0			REV__nc|ENSG00000169598|O76075-4|DFFB	REV__nc|ENSG00000169598|O76075-4|DFFB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8187255859375	2	520.340375	1038.6662	0.1349	7.0195E-05	0.45642	0.00023749	0.59132	0.00030769	520.3406592285534	71.258	0.23224	71.258	71.145	71.377	0					8	5	2	0	0	0	0.024405	1	8648	8648		27.882	5.9224	1	63592	+		60626	26381	42578	42639	65893	65893					0.14841123596420402
PSRLEPGPL	9	Unmodified	_PSRLEPGPL_					0	0	0		nc|ENSG00000166507|P52849-2|NDST2;ENSG00000166507|ENST00000309979|NDST2	nc|ENSG00000166507|P52849-2|NDST2	nc|ENSG00000166507|P52849-2|NDST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.3109436035156	2	483.274367	964.53418	-0.077182	-3.73E-05	0.84312	0.00040746	0.76594	0.00037016	483.27408777354765	67.655	0.24291	67.367	67.227	67.47	-0.28834					8	5	2	0	0	0	0.024397	1	8030	8030		31.53	0	1	30933			60627	7573	42579	42640	65894	65894					0.05049473788801606
PSRLLLHF	8	Unmodified	_PSRLLLHF_					0	0	0			REV__ENST00000483485.5_1_20:17934679-17937653:-|nuORF	REV__ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.7957458496094	2	491.795269	981.575986	-0.15145	-7.4485E-05	1.313	0.00064572	1.1615	0.00057124	491.7958080246407	47.771	1.5597	47.495	46.483	48.043	-0.27598					128	42	5	0	0	0	0.97924	1	4697	4697		40.573	3.4135	1	5590000	+		60628	33511	42580	42641	65895	65895					0.08446074267988024
PSRLLLYGPG	10	Unmodified	_PSRLLLYGPG_					0	0	0			REV__ENST00000586136.5_1_19:30097284-30104129:+|nuORF	REV__ENST00000586136.5_1_19:30097284-30104129:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2344360351562	2	536.811116	1071.60768	0.5441	0.00029208	-0.26312	-0.00014125	0.28098	0.00015083	537.3121025323281	67.787	0.24892	67.532	67.412	67.661	-0.25516					9	5	2	0	0	0	0.03519	1	7792	7792		21.96	0	1	70283	+		60629	35589	42581	42642	65896	65896					0.07474022231258459
PSRPKSAKTT	10	Unmodified	_PSRPKSAKTT_					0	0	0			REV__ENST00000512800.1_1_4:189310112-189310745:-|nuORF	REV__ENST00000512800.1_1_4:189310112-189310745:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7459106445312	2	536.809105	1071.60366	-0.75874	-0.0004073	0.061368	3.2943E-05	-0.69737	-0.00037435	536.8090690786427	29.786	0.63049	29.636	29.337	29.967	-0.14952					35	14	4	0	0	0	0.03519	1	1872	1872		16.007	0	1	409510	+		60630	34142	42582	42643	65897	65897					0.07071932737562747
PSRPLASK	8	Unmodified	_PSRPLASK_					0	0	0			REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.73736572265625	2	428.255977	854.497401	-0.051831	-2.2197E-05	-0.031912	-1.3666E-05	-0.083743	-3.5863E-05	428.2557121668477	23.3	0.63616	23.12	22.883	23.519	-0.17989					22	14	2	0	0	0	0.027866	1	925	925		10.265	6.8552	1	199490	+		60631	30578	42583	42644	65898	65898					0.0643322196290228
PSRPLASK	8	Unmodified	_PSRPLASK_					0	0	0			REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	428.255977	854.497401	0.63542	0.00027212	4.005	0.0017152	4.6405	0.0019873	428.2557729017891	23.316	0.92205	23.114	22.78	23.702	-0.20193	-0.0028766	0.00388	NaN	5.9211	51	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166400	+		60632	30578	42583	42644							0.0643322196290228
PSRPLASK	8	Unmodified	_PSRPLASK_					0	0	0			REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	428.255977	854.497401	2.0073	0.00085963	-1.4877	-0.00063712	0.51956	0.00022251	428.25508559750506	23.308	0.51723	23.116	22.804	23.321	-0.19117	-0.00019614	-0.00082457	NaN	5.9211	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225410	+		60633	30578	42583	42644							0.0643322196290228
PSRQAQSHLA	10	Unmodified	_PSRQAQSHLA_					0	0	0		ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2786865234375	2	547.788704	1093.56285	-1.2828	-0.0007027	-3.4353	-0.0018818	-4.7181	-0.0025845	547.7867640027139	31.195	0.25422	31.195	31.003	31.257	0					8	5	2	0	0	0	0.03519	1	2054	2054		25.574	0	1	78055			60634	16161	42584	42645	65899	65899					0.019815914179389438
PSRQISLPD	9	Unmodified	_PSRQISLPD_					0	0	0		nc|ENSG00000066855|Q15390-2|MTFR1;ENSG00000066855|ENST00000262146|MTFR1;ENST00000424808.6_1_8:66582187-66620357:+|nuORF	nc|ENSG00000066855|Q15390-2|MTFR1	nc|ENSG00000066855|Q15390-2|MTFR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.79266357421875	2	506.774731	1011.53491	-1.2814	-0.00064937	0.71172	0.00036068	-0.56966	-0.00028869	506.7755360813174	44.324	0.39336	44.179	44.065	44.459	-0.14471					22	11	3	0	0	0	0.023817	1	4183	4183		71.296	0	1	1229000			60635	1347	42585	42646	65900	65900					0.029602684378687627
PSRQLVLSV	9	Unmodified	_PSRQLVLSV_					0	0	0		ENST00000548159.5_2_12:70637735-70637981:+|nuORF;ENST00000549750.5_1_12:70637735-70671968:+|nuORF	ENST00000548159.5_2_12:70637735-70637981:+|nuORF	ENST00000548159.5_2_12:70637735-70637981:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2079772949219	2	499.803291	997.59203	-1.2829	-0.00064121	0.051199	2.5589E-05	-1.2317	-0.00061562	499.8031768283784	43.987	0.40994	43.767	43.49	43.9	-0.21938					16	10	2	0	0	0	0.024257	1	4053	4053		58.23	12.258	1	330640			60636	16545	42586	42647	65901	65901					0.09313735714238192
PSRRDSYSD	9	Unmodified	_PSRRDSYSD_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7388305664062	2	541.746702	1081.47885	-0.20488	-0.00011099	3.3011	0.0017884	3.0962	0.0016774	541.7485262331257	58.48	0.48577	58.292	58.095	58.58	-0.18793					15	11	2	0	0	0	0.024397	1	6440	6440		39.253	20.149	1	291860			60637	7118	42587	42648	65902	65902					-0.058629844696270084
PSRRDSYSD	9	Unmodified	_PSRRDSYSD_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.746702	1081.47885	-0.43776	-0.00023715	2.6794	0.0014516	2.2417	0.0012144	541.7478893100063	58.53	0.48338	58.342	58.18	58.663	-0.18795	-0.0030661	-0.00047009	NaN	39.253	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251620			60638	7118	42587	42648							-0.058629844696270084
PSRRDSYSD	9	Unmodified	_PSRRDSYSD_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.746702	1081.47885	-0.14526	-7.8694E-05	3.2838	0.001779	3.1385	0.0017003	541.7483290178935	58.643	0.49282	58.402	58.129	58.622	-0.24165	0.056446	0.0001847	NaN	39.253	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394060			60639	7118	42587	42648							-0.058629844696270084
PSRRLATL	8	Unmodified	_PSRRLATL_					0	0	0			REV__ENST00000588460.5_1_17:74733495-74734059:+|nuORF	REV__ENST00000588460.5_1_17:74733495-74734059:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.7509765625	2	457.282526	912.550499	-0.8713	-0.00039843	-2.8164	-0.0012879	-3.6877	-0.0016863	457.2835004885019	30.11	0.21487	29.932	29.782	29.997	-0.17818					6	4	2	0	0	0	0.027866	1	1871	1871		9.1829	0	1	19044	+		60640	35652	42588	42649	65903	65903					0.09072599745559273
PSRRLHGSRAI	11	Unmodified	_PSRRLHGSRAI_					0	0	0		nc|ENSG00000169221|Q4KMP7-2|TBC1D10B;ENST00000475650.1_1_16:30369267-30370181:-|nuORF;ENSG00000169221|ENST00000409939|TBC1D10B	nc|ENSG00000169221|Q4KMP7-2|TBC1D10B	nc|ENSG00000169221|Q4KMP7-2|TBC1D10B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	625.8678588867188	2	625.365444	1248.71634	-0.15188	-9.4983E-05	1.5919	0.00099551	1.44	0.00090053	625.3661358024929	100.1	0.71252	99.971	99.602	100.31	-0.12504					62	22	3	0	0	0	0.98542	1	12401	12401		40.058	0	1	4831500			60641	7915	42589	42650	65904	65904					0.10192626254297465
PSRRLWLK	8	Unmodified	_PSRRLWLK_					0	0	0		ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2867431640625	2	528.327268	1054.63998	-0.75974	-0.00040139	-1.1012	-0.0005818	-1.861	-0.0009832	528.3262978713651	30.636	0.33281	30.645	30.373	30.706	0.0086708					10	7	2	0	0	0	0.027866	1	1939	1939		12.959	0	1	31222			60642	16889	42590	42651	65905	65905					0.11484854424929836
PSRSFSLLP	9	Unmodified	_PSRSFSLLP_					0	0	0			REV__ENSG00000134438|ENST00000334889|RAX	REV__ENSG00000134438|ENST00000334889|RAX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75384521484375	2	502.282192	1002.54983	-1.1704	-0.00058787	2.3459	0.0011783	1.1755	0.00059045	502.2833869990891	29.194	0.66762	29.194	28.82	29.487	0					28	16	2	0	0	0	0.024427	1	1737	1737		34.173	15.848	1	186060	+		60643	23450	42591	42652	65906	65906					0.048657603058586574
PSRSGGLLLL	10	Unmodified	_PSRSGGLLLL_					0	0	0			REV__ENST00000541775.5_1_12:7268136-7268196:+|nuORF	REV__ENST00000541775.5_1_12:7268136-7268196:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8114013671875	2	506.811116	1011.60768	-0.76083	-0.0003856	-0.20864	-0.00010574	-0.96948	-0.00049134	506.8111194725813	54.608	1.2505	54.608	54.214	55.464	0					119	35	5	0	0	0	0.82838	1	6007	6007		58.782	5.4305	1	40876000	+		60644	34779	42592	42653	65907	65907					0.10234022231293238
PSRSSTQEL	9	Unmodified	_PSRSSTQEL_					0	0	0			REV__ENST00000531442.1_1_11:57416237-57417408:-|nuORF	REV__ENST00000531442.1_1_11:57416237-57417408:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.75396728515625	2	502.753995	1003.49344	0.017626	8.8613E-06	-0.83741	-0.00042101	-0.81979	-0.00041215	502.75338691726	28.519	0.98297	28.599	28.035	29.018	0.080811					58	23	4	0	0	0	0.54416	1	1634	1634		56.434	1.7114	1	1208100	+		60645	34556	42593	42654	65908	65908					-0.00816912321477048
PSRSVFDR	8	Unmodified	_PSRSVFDR_					0	0	0		ENST00000324913.9_1_2:113343817-113346500:+|nuORF	ENST00000324913.9_1_2:113343817-113346500:+|nuORF	ENST00000324913.9_1_2:113343817-113346500:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.732666015625	2	482.253966	962.493378	0.0047004	2.2668E-06	2.1636	0.0010434	2.1683	0.0010457	482.2547853024824	57.262	0.30715	57.262	57.038	57.345	0					9	7	2	0	0	0	0.027866	1	6445	6445		56.721	19.562	1	129390			60646	12265	42594	42655	65909	65909					0.010631324691871669
PSRTETLVE	9	Unmodified	_PSRTETLVE_					0	0	0		ENST00000506630.1_1_5:149771735-149772383:+|nuORF;ENST00000514442.5_1_5:149772206-149772383:+|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1	ENST00000506630.1_1_5:149771735-149772383:+|nuORF	ENST00000506630.1_1_5:149771735-149772383:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.795166015625	2	516.272021	1030.52949	1.9411	0.0010021	2.801	0.0014461	4.7421	0.0024482	516.2725217669131	23.893	0.31035	23.712	23.582	23.893	-0.18089					9	6	2	0	0	0	0.024447	1	969	969		32.812	3.6629	1	28258			60647	1438	42595	42656	65910	65910					0.01544544855391905
PSRTHWFS	8	Unmodified	_PSRTHWFS_					0	0	0		ENST00000524790.5_1_11:7686353-7686524:-|nuORF	ENST00000524790.5_1_11:7686353-7686524:-|nuORF	ENST00000524790.5_1_11:7686353-7686524:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2523193359375	2	509.248683	1016.48281	-0.49681	-0.000253	-2.9241	-0.0014891	-3.4209	-0.0017421	509.24588320007166	36.629	0.52936	36.586	36.28	36.81	-0.042458					20	13	2	0	0	0	0.027866	1	2900	2900		47.916	5.4411	1	71524			60648	16070	42596	42657	65911	65911					-0.024768501852463487
PSRTLGAEI	9	Unmodified	_PSRTLGAEI_					0	0	0		ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2645263671875	2	472.263999	942.513445	-0.20487	-9.6755E-05	-0.51089	-0.00024128	-0.71577	-0.00033803	472.26375634482406	62.706	1.282	62.706	62.384	63.666	0					81	33	3	0	0	0	0.086035	1	7340	7340		115.49	12.721	1	18474000			60649	17110	42597	42658	65912	65912					0.03988883409135724
PSRTLGAEI	9	Unmodified	_PSRTLGAEI_					0	0	0		ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2646789550781	2	472.263999	942.513445	-0.33861	-0.00015991	-0.28558	-0.00013487	-0.62419	-0.00029478	472.2638682529035	62.95	1.3012	62.71	62.37	63.671	-0.23926					118	34	5	0	0	0	0.10174	1	7338	7338		110.12	16.113	1	18045000			60650	17110	42597	42658	65913	65913					0.03988883409135724
PSRTLGAEI	9	Unmodified	_PSRTLGAEI_					0	0	0		ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	ENST00000576921.1_1_16:3073840-3074247:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2645263671875	2	472.263999	942.513445	0.45136	0.00021316	-1.1079	-0.0005232	-0.65651	-0.00031004	472.2634781202726	62.647	1.4688	62.709	62.201	63.67	0.062767					109	38	5	0	0	0	0.15366	2	7249	7235;7249		98.629	24.374	1	18436000			60651	17110	42597	42658	65914;65915	65915					0.03988883409135724
PSRTLLVLN	9	Unmodified	_PSRTLLVLN_					0	0	0			REV__nc|ENSG00000289758|Q92902-2|HPS1	REV__nc|ENSG00000289758|Q92902-2|HPS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.24029541015625	2	506.811116	1011.60768	-1.0941	-0.00055453	0.43746	0.00022171	-0.65669	-0.00033282	506.81113167157366	29.967	0.33335	30.046	29.883	30.216	0.078344					12	7	2	0	0	0	0.024466	1	1856	1856		18.262	11.949	1	45330	+		60652	21670	42598	42659	65916	65916					0.1023402223128187
PSRTLLVLN	9	Unmodified	_PSRTLLVLN_					0	0	0			REV__nc|ENSG00000289758|Q92902-2|HPS1	REV__nc|ENSG00000289758|Q92902-2|HPS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.811116	1011.60768	-1.4118	-0.00071552	1.8969	0.00096136	0.48508	0.00024585	507.3142541138385	30.158	0.28804	30.158	30.096	30.384	0	0.0024332	0.0013664	NaN	27.047	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52700	+		60653	21670	42598	42659							0.1023402223128187
PSRTLLVLN	9	Unmodified	_PSRTLLVLN_					0	0	0			REV__nc|ENSG00000289758|Q92902-2|HPS1	REV__nc|ENSG00000289758|Q92902-2|HPS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.811116	1011.60768	-0.66663	-0.00033785	0.23062	0.00011688	-0.43601	-0.00022098	506.81100757698175	30.254	0.33099	30.263	30.042	30.373	0.0086708	0.1073	-0.00032261	NaN	27.047	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30734	+		60654	21670	42598	42659							0.1023402223128187
PSRTQRDLRRL	11	Unmodified	_PSRTQRDLRRL_					0	0	0		ENST00000544040.5_1_12:6715495-6716565:-|nuORF	ENST00000544040.5_1_12:6715495-6716565:-|nuORF	ENST00000544040.5_1_12:6715495-6716565:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.6079406738281	3	466.607652	1396.80113	0.02491	1.1623E-05	0.81248	0.00037911	0.83739	0.00039073	466.60793572858927	100.17	2.0135	100.17	99.98	101.99	0					84	47	2	0	0	0	1.0811	1	12902	12902		16.53	0.6092	1	846240			60655	16474	42599	42660	65917	65917					0.11859952000190788
PSRTRSILD	9	Unmodified	_PSRTRSILD_					0	0	0			REV__nc|ENSG00000188687|Q9BY07-6|SLC4A5	REV__nc|ENSG00000188687|Q9BY07-6|SLC4A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8173828125	2	522.793455	1043.57236	-0.42869	-0.00022412	3.0485	0.0015937	2.6198	0.0013696	522.7949110095723	65.062	0.70905	65.099	64.78	65.489	0.037384					50	19	4	0	0	0	0.023837	1	7573	7573		37.812	0	1	1424500	+		60656	28053	42600	42661	65918	65918					0.05231359703475391
PSRTVLLLV	9	Unmodified	_PSRTVLLLV_					0	0	0			REV__ENSG00000006007|ENST00000353258|GDE1	REV__ENSG00000006007|ENST00000353258|GDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.32379150390625	2	499.32386	996.633166	-0.46163	-0.0002305	0.61573	0.00030745	0.1541	7.6947E-05	499.3241339802227	76.169	1.1743	75.94	75.598	76.772	-0.22843					71	29	4	0	0	0	0.74711	1	9325	9325		42.864	2.0861	1	6298600	+		60657	19817	42601	42662	65919	65919					0.1347149675370929
PSRTVLLLV	9	Unmodified	_PSRTVLLLV_					0	0	0			REV__ENSG00000006007|ENST00000353258|GDE1	REV__ENSG00000006007|ENST00000353258|GDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.323486328125	2	499.32386	996.633166	0.38604	0.00019276	-0.27224	-0.00013593	0.11381	5.6827E-05	499.32367611671106	75.985	1.0941	75.997	75.681	76.775	0.011635					62	27	3	0	0	0	0.74711	1	9255	9255		42.864	2.0861	1	6312300	+		60658	19817	42601	42662	65920	65920					0.1347149675370929
PSRVQLPL	8	Unmodified	_PSRVQLPL_					0	0	0			REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.279296875	2	455.279452	908.544351	-0.05197	-2.3661E-05	-0.094396	-4.2976E-05	-0.14637	-6.6637E-05	455.27926936765687	24.624	0.76625	24.409	24.177	24.943	-0.2151					37	17	3	0	0	0	0.87148	1	1094	1094		53.351	5.4358	1	1080300	+		60659	31954	42602	42663	65921	65921					0.08642081514040001
PSRVQLPL	8	Unmodified	_PSRVQLPL_					0	0	0			REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2793273925781	2	455.279452	908.544351	-0.1764	-8.0313E-05	0.23598	0.00010744	0.059576	2.7124E-05	455.2794260771321	24.405	0.59059	24.23	24.007	24.598	-0.17484					29	13	3	0	0	0	0.6248	1	1061	1061		73.975	0	1	995500	+		60660	31954	42602	42663	65922	65922					0.08642081514040001
PSRVQLPL	8	Unmodified	_PSRVQLPL_					0	0	0			REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	455.279452	908.544351	-0.05197	-2.3661E-05	-0.094396	-4.2976E-05	-0.14637	-6.6637E-05	455.27926936765687	24.624	0.76625	24.409	24.177	24.943	-0.2151	0.098442	0.00028219	NaN	73.975	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1080300	+		60661	31954	42602	42663							0.08642081514040001
PSRVQLPL	8	Unmodified	_PSRVQLPL_					0	0	0			REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	REV__ENST00000409262.7_1_2:74326608-74327766:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	455.279452	908.544351	-0.1764	-8.0313E-05	0.23598	0.00010744	0.059576	2.7124E-05	455.2794260771321	24.405	0.59059	24.23	24.007	24.598	-0.17484	-0.080459	0.00058302	NaN	73.975	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995500	+		60662	31954	42602	42663							0.08642081514040001
PSRVQRVT	8	Unmodified	_PSRVQRVT_					0	0	0		ENST00000415891.5_1_2:29380207-29397312:+|nuORF;ENST00000493551.1_1_2:29383269-29390459:+|nuORF;ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4	ENST00000415891.5_1_2:29380207-29397312:+|nuORF;ENSG00000115295|ENST00000320081|CLIP4	ENSG00000115295|ENST00000320081|CLIP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7740783691406	2	471.777608	941.540663	-0.23822	-0.00011239	0.60188	0.00028396	0.36367	0.00017157	471.77738296960297	22.802	0.52478	22.876	22.745	23.27	0.073954					16	11	2	0	0	0	0.027866	1	787	787		21.96	0	1	47683			60663	3429;13888	42603	42664	65923	65923					0.0675541174019827
PSSAAPKPNP	10	Unmodified	_PSSAAPKPNP_					0	0	0			REV__ENST00000528375.1_1_11:61905314-61909007:+|nuORF	REV__ENST00000528375.1_1_11:61905314-61909007:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.23431396484375	2	483.256174	964.497795	-0.67255	-0.00032501	2.3667	0.0011437	1.6941	0.00081868	483.2561451804356	23.56	0.61804	23.499	23.152	23.77	-0.060862					23	14	3	0	0	0	0.03519	1	933	933		14.865	1.0895	1	74635	+		60664	24683	42604	42665	65924	65924					0.014125968920893683
PSSCLAALLEA	11	Unmodified	_PSSCLAALLEA_					0	0	0			REV__ENST00000376701.4_1_X:48549553-48549787:+|nuORF	REV__ENST00000376701.4_1_X:48549553-48549787:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.777099609375	2	537.778625	1073.5427	-0.92649	-0.00049825	-1.9005	-0.0010221	-2.827	-0.0015203	537.777450495272	20.444	0.86664	20.339	20.129	20.995	-0.10477					39	17	4	0	0	0	0.99553	1	529	529		37.812	3.639	1	374470	+		60665	31366	42605	42666	65925	65925					0.008866596431289508
PSSDEQFTKV	10	Unmodified	_PSSDEQFTKV_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.2803344726562	2	569.274761	1136.53497	-1.0327	-0.00058791	4.1504	0.0023627	3.1177	0.0017748	569.2769368352411	79.556	2.6287	79.556	79.201	81.83	0					198	63	4	0	0	0	0.98527	1	9947	9947		47.96	8.7067	1	2608600	+		60666	24816	42606	42667	65926	65926					-0.02783776352816858
PSSDRWQP	8	Unmodified	_PSSDRWQP_					0	0	0			REV__ENST00000396946.8_1_7:2998153-3083527:-|nuORF	REV__ENST00000396946.8_1_7:2998153-3083527:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.75927734375	2	486.730323	971.446094	-0.36318	-0.00017677	-1.7951	-0.00087372	-2.1583	-0.0010505	486.7272868963285	37.42	0.22204	37.453	37.303	37.525	0.032269					7	5	2	0	0	0	0.027866	1	2999	2999		19.36	2.8868	1	35515	+		60667	31752	42607	42668	65927	65927					-0.04077146801807885
PSSEGWPSSL	10	Unmodified	_PSSEGWPSSL_					0	0	0			REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	REV__nc|ENSG00000103091|Q6PJI9-4|WDR59	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2781982421875	2	523.743096	1045.47164	-1.4891	-0.00077993	-3.5115	-0.0018391	-5.0006	-0.002619	523.7413600427524	38.116	0.14001	38.143	38.057	38.197	0.027275					6	3	2	0	0	0	0.03519	1	3102	3102		87.754	31.321	1	70676	+		60668	21355	42608	42669	65928	65928					-0.049277170700406714
PSSFCCLSL	9	Unmodified	_PSSFCCLSL_					0	0	0			REV__ENST00000482732.1_1_X:153628091-153628283:+|nuORF	REV__ENST00000482732.1_1_X:153628091-153628283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.27764892578125	2	478.714439	955.414325	-0.3444	-0.00016487	0.62602	0.00029969	0.28162	0.00013481	478.71453278266864	82.541	0.51474	82.567	82.358	82.873	0.025711					19	11	2	0	0	0	0.024374	1	10246	10246		40.778	5.1599	1	151410	+		60669	33489	42609	42670	65929	65929					-0.06516598871610313
PSSFYVFQD	9	Unmodified	_PSSFYVFQD_					0	0	0		ENST00000563604.1_1_15:43016691-43016850:-|nuORF	ENST00000563604.1_1_15:43016691-43016850:-|nuORF	ENST00000563604.1_1_15:43016691-43016850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2677612304688	2	545.248015	1088.48148	-0.86696	-0.00047271	-2.6376	-0.0014381	-3.5045	-0.0019108	545.246583939743	35.544	0.48058	35.357	35.14	35.621	-0.18675					20	12	2	0	0	0	0.022756	1	2727	2727		58.782	0	1	359650			60670	16873	42610	42671	65930	65930					-0.059225290646509166
PSSIMLISF	9	Unmodified	_PSSIMLISF_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2535400390625	2	497.767529	993.520504	-0.019981	-9.946E-06	3.5689	0.0017765	3.5489	0.0017665	497.7692191251416	49.703	0.33835	49.551	49.407	49.745	-0.1512					22	8	3	0	0	0	0.024323	1	5117	5117		20.947	0	1	333870			60671	9221	42611	42672	65931	65931					0.023484799653488153
PSSIPAWLF	9	Unmodified	_PSSIPAWLF_					0	0	0			REV__ENST00000371933.7_1_1:47183758-47183959:-|nuORF	REV__ENST00000371933.7_1_1:47183758-47183959:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.80279541015625	2	509.273835	1016.53312	-0.21387	-0.00010892	-4.1686	-0.002123	-4.3825	-0.0022319	509.271664442195	37.079	0.73095	37.111	36.756	37.487	0.032269					29	16	2	0	0	0	0.024506	1	2923	2923		23.042	0	1	381510	+		60672	31182	42612	42673	65932	65932					0.02551259419908547
PSSKHQLLS	9	Unmodified	_PSSKHQLLS_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7662658691406	2	498.777274	995.539994	-0.6986	-0.00034844	2.1604	0.0010775	1.4618	0.00072909	498.7777235272907	36.397	0.44095	36.354	36.208	36.649	-0.042454					21	11	3	0	0	0	0.023061	1	2887	2887		79.713	36.848	1	128490			60673	3469	42613	42674	65933	65933					0.042045723004889624
PSSKQRKPG	9	Unmodified	_PSSKQRKPG_					0	0	0		ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2668151855469	2	492.78289	983.551228	-0.36216	-0.00017846	0.30431	0.00014996	-0.057847	-2.8506E-05	492.7824249370987	28.227	0.33499	28.308	28.035	28.37	0.080811					11	7	2	0	0	0	0.024381	1	1558	1558		37.159	0	1	533730			60674	10831	42614	42675	65934	65934					0.058793943946284344
PSSLDLAPK	9	Unmodified	_PSSLDLAPK_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.258544921875	2	464.260925	926.507297	-0.93491	-0.00043404	-1.789	-0.00083058	-2.7239	-0.0012646	464.25993450615397	21.313	0.72329	21.313	21.048	21.771	0					27	14	3	0	0	0	0.50848	1	644	644		58.782	2.0609	1	313780	+		60675	27252	42615	42676	65935	65935					0.04110365177609765
PSSLDLAPK	9	Unmodified	_PSSLDLAPK_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2588195800781	2	464.260925	926.507297	0.57815	0.00026841	-3.3499	-0.0015552	-2.7718	-0.0012868	464.25919067717876	21.288	0.72375	21.36	21.057	21.781	0.071487					27	14	3	0	0	0	0.72875	1	596	596		44.117	3.3386	1	326410	+		60676	27252	42615	42676	65936	65936					0.04110365177609765
PSSLDLAPK	9	Unmodified	_PSSLDLAPK_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	464.260925	926.507297	-0.93491	-0.00043404	-1.789	-0.00083058	-2.7239	-0.0012646	464.25993450615397	21.313	0.72329	21.313	21.048	21.771	0	0.039463	0.0030781	NaN	58.782	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313780	+		60677	27252	42615	42676							0.04110365177609765
PSSLDLAPK	9	Unmodified	_PSSLDLAPK_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	464.260925	926.507297	-0.34524	-0.00016028	-2.5355	-0.0011771	-2.8807	-0.0013374	464.2596647245647	21.374	0.6335	21.284	20.911	21.545	-0.090092	0.010665	0.002385	NaN	58.782	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359790	+		60678	27252	42615	42676							0.04110365177609765
PSSLDLAPK	9	Unmodified	_PSSLDLAPK_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.260925	926.507297	0.2148	9.9723E-05	-9.3497	-0.0043407	-9.1349	-0.004241	464.25795159537165	21.328	0.19749	21.137	21.029	21.226	-0.19072	-0.1364	-0.0039421	NaN	58.782	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5478.6	+		60679	27252	42615	42676							0.04110365177609765
PSSLKKKEA	9	Unmodified	_PSSLKKKEA_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.76910400390625	2	494.295299	986.576045	-0.43093	-0.00021301	-0.80983	-0.0004003	-1.2408	-0.0006133	494.2945163506099	47.228	0.66629	47.132	46.719	47.385	-0.096649					27	17	2	0	0	0	0.024374	1	4640	4640		32.812	4.5581	1	206860			60680	4123;13785	42616	42677	65937	65937					0.08222029477326487
PSSLKKKEA	9	Unmodified	_PSSLKKKEA_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.295299	986.576045	0.3598	0.00017785	-0.45104	-0.00022295	-0.091242	-4.51E-05	494.2947630469527	47.466	0.46622	47.313	46.94	47.406	-0.15301	0.083889	0.0003937	NaN	32.812	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420720			60681	4123;13785	42616	42677							0.08222029477326487
PSSLKKKEA	9	Unmodified	_PSSLKKKEA_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.295299	986.576045	-0.76587	-0.00037857	-0.77122	-0.00038121	-1.5371	-0.00075978	494.29449096098574	47.308	0.35006	47.367	47.106	47.457	0.059097	0.13793	7.7172E-05	NaN	32.812	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515860			60682	4123;13785	42616	42677							0.08222029477326487
PSSLKKKEA	9	Unmodified	_PSSLKKKEA_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4;ENST00000418251.6_1_2:113943320-113958989:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.295299	986.576045	0.20163	9.9664E-05	-0.95564	-0.00047237	-0.75401	-0.0003727	494.29459281511726	47.496	0.55556	47.226	46.908	47.463	-0.26939	-0.0031313	-0.00010514	NaN	32.812	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209920			60683	4123;13785	42616	42677							0.08222029477326487
PSSLRPAPK	9	Unmodified	_PSSLRPAPK_					0	0	0			REV__nc|ENSG00000259024|Q96ET8|TVP23C	REV__nc|ENSG00000259024|Q96ET8|TVP23C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.777587890625	2	476.782359	951.550165	0.43802	0.00020884	0.25817	0.00012309	0.69619	0.00033193	476.78231228822125	27.303	1.1844	27.303	26.7	27.884	0					53	30	2	0	0	0	0.024263	1	1487	1487		60.972	7.6205	1	1064600	+		60684	37181	42617	42678	65938	65938					0.07245180025699938
PSSLTRTAKP	10	Unmodified	_PSSLTRTAKP_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3037109375	2	529.303655	1056.59276	-0.57975	-0.00030686	0.19557	0.00010352	-0.38418	-0.00020335	529.3036549690316	31.552	0.7241	31.564	31.299	32.023	0.011797					47	17	4	0	0	0	0.82838	1	2098	2098		58.782	0	1	1924200	+		60685	24556	42618	42679	65939	65939					0.0667253036326656
PSSLYKPL	8	Unmodified	_PSSLYKPL_					0	0	0			REV__ENSG00000168427|ENST00000409223|KLHL30	REV__ENSG00000168427|ENST00000409223|KLHL30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2477722167969	2	452.760561	903.506569	0.67304	0.00030473	0.3493	0.00015815	1.0223	0.00046287	452.760924240447	33.089	0.39021	33.146	32.995	33.386	0.056572					14	10	2	0	0	0	0.027866	1	2332	2332		28.254	0	1	342220	+		60686	26257	42619	42680	65940	65940					0.0509557052856735
PSSNESPAEL	10	Unmodified	_PSSNESPAEL_					0	0	0			REV__TET1|p.S901L|1|0.12|ENSG00000138336|chr10:68645431-68645431|C/T|missense_variant	REV__TET1|p.S901L|1|0.12|ENSG00000138336|chr10:68645431-68645431|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.28857421875	2	515.738011	1029.46147	-0.26278	-0.00013553	1.2677	0.00065379	1.0049	0.00051826	515.7385409926407	39.866	1.5061	39.641	38.753	40.259	-0.225					82	39	3	0	0	0	0.03519	1	3438	3438		67.494	33.321	1	442600	+		60687	37685	42620	42681	65941	65941					-0.0520832479528508
PSSQELGIP	9	Unmodified	_PSSQELGIP_					0	0	0		nc|ENSG00000089091|Q9NVP4-5|DZANK1	nc|ENSG00000089091|Q9NVP4-5|DZANK1	nc|ENSG00000089091|Q9NVP4-5|DZANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2427062988281	2	464.242732	926.470912	0.96212	0.00044666	-0.89153	-0.00041389	0.07059	3.2771E-05	464.2422438374254	68.076	1.0209	68.095	67.743	68.764	0.018913					68	26	4	0	0	0	0.096521	2	8071	8071;8084		111.65	0.057861	1	4324100			60688	18105	42621	42682	65942;65943	65942					0.004734882809088958
PSSRLLVY	8	Unmodified	_PSSRLLVY_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.26373291015625	2	467.77146	933.528367	-0.4841	-0.00022645	-0.22249	-0.00010408	-0.70659	-0.00033052	467.77126966960594	43.838	0.38091	43.733	43.544	43.925	-0.10468					15	9	2	0	0	0	0.027866	1	4028	4028		29.15	0	1	191620			60689	198	42622	42683	65944	65944					0.05894375277148356
PSSSCDLRL	9	Unmodified	_PSSSCDLRL_					0	0	0		nc|ENSG00000037757|Q9BV20-2|MRI1;ENSG00000037757|ENST00000040663|MRI1	nc|ENSG00000037757|Q9BV20-2|MRI1	nc|ENSG00000037757|Q9BV20-2|MRI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.27056884765625	2	489.239667	976.46478	-0.60208	-0.00029456	2.5477	0.0012464	1.9456	0.00095189	489.2409764647449	38.956	0.79346	38.858	38.475	39.269	-0.098755					45	21	3	0	0	0	0.024025	1	3333	3333		52.937	3.4952	1	681520			60690	1048	42623	42684	65945	65945					-0.02439353222268892
PSSSHVLAK	9	Unmodified	_PSSSHVLAK_					0	0	0			REV__ENSG00000170677|ENST00000397942|SOCS6	REV__ENSG00000170677|ENST00000397942|SOCS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.26922607421875	2	463.258717	924.50288	-0.11021	-5.1055E-05	2.1578	0.00099963	2.0476	0.00094858	463.25871886566205	46.017	2.1406	46.017	44.862	47.003	0					110	60	3	0	0	0	0.024323	1	4466	4466		35.618	18.253	1	412610	+		60691	26493	42624	42685	65946	65946					0.03760900754718932
PSSSHVLAK	9	Unmodified	_PSSSHVLAK_					0	0	0			REV__ENSG00000170677|ENST00000397942|SOCS6	REV__ENSG00000170677|ENST00000397942|SOCS6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.258717	924.50288	-0.65867	-0.00030514	-2.732	-0.0012656	-3.3907	-0.0015708	463.2574654664839	46.447	0.36684	46.245	46.005	46.372	-0.20226	0.12827	-0.0030357	NaN	44.117	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196590	+		60692	26493	42624	42685							0.03760900754718932
PSSSIEHEA	9	Unmodified	_PSSSIEHEA_					0	0	0			REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	REV__nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.30096435546875	2	478.719621	955.42469	0.20983	0.00010045	1.8698	0.00089512	2.0797	0.00099558	478.72133598029706	65.804	0.21237	65.531	65.43	65.642	-0.27282					9	5	3	0	0	0	0.024457	1	7791	7791		29.15	0.89528	1	67278	+		60693	20397	42625	42686	65947	65947					-0.054805766211757145
PSSSRRCR	8	Unmodified	_PSSSRRCR_					0	0	0			REV__ENST00000563536.1_1_16:67218917-67219541:-|nuORF	REV__ENST00000563536.1_1_16:67218917-67219541:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.2599182128906	2	474.743242	947.471931	0.68851	0.00032687	2.3811	0.0011304	3.0696	0.0014573	474.7441886557272	42.767	1.6669	42.767	42.389	44.056	0					77	45	3	0	0	0	0.027866	1	4130	4130		42.396	8.8806	1	1288900	+		60694	35231	42626	42687	65948	65948					-0.0039057583117028116
PSSVFLSWGFL	11	Unmodified	_PSSVFLSWGFL_					0	0	0		nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENSG00000154175|ENST00000471714|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	nc|ENSG00000154175|Q7Z7G0|ABI3BP	nc|ENSG00000154175|Q7Z7G0|ABI3BP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.8905029296875	3	413.88513	1238.63356	0.28384	0.00011748	-3.548	-0.0014685	-3.2642	-0.001351	413.8836175173792	21.379	0.62405	21.202	20.87	21.494	-0.17721					21	12	2	0	0	0	0.024743	1	638	638		36.318	11.798	1	40962			60695	6389	42627	42688	65949	65949					0.023788716829130863
PSSVGMKHCL	10	Unmodified	_PSSVGMKHCL_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3109741210938	2	529.759712	1057.50487	-0.44326	-0.00023482	-4.3079	-0.0022822	-4.7512	-0.002517	530.2580063790772	60.765	0.1949	60.559	60.463	60.658	-0.20599					5	4	2	0	0	0	0.03519	1	6779	6779		51.335	7.2187	1	74315	+		60696	32545	42628	42689	65950	65950					-0.021581298233513735
PSSVPGVPTR	10	Unmodified	_PSSVPGVPTR_					0	0	0			REV__nc|ENSG00000235718|Q9BY79-2|MFRP	REV__nc|ENSG00000235718|Q9BY79-2|MFRP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.76629638671875	2	498.777274	995.539994	0.15745	7.8532E-05	1.0295	0.00051351	1.187	0.00059204	498.7776513762857	36.599	0.51729	36.599	36.37	36.887	0					20	13	2	0	0	0	0.03519	1	2923	2923		85.161	23.053	1	147070	+		60697	37150	42629	42690	65951	65951					0.04204572300477594
PSSVPGVPTR	10	Unmodified	_PSSVPGVPTR_					0	0	0			REV__nc|ENSG00000235718|Q9BY79-2|MFRP	REV__nc|ENSG00000235718|Q9BY79-2|MFRP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7664489746094	2	498.777274	995.539994	-0.37691	-0.000188	1.9357	0.00096546	1.5587	0.00077747	498.77781305084875	36.468	0.46952	36.506	36.374	36.843	0.03804					19	12	2	0	0	0	0.03519	1	2862	2862		75.043	27.084	1	148060	+		60698	37150	42629	42690	65952	65952					0.04204572300477594
PSSVPKHYIA	10	Unmodified	_PSSVPKHYIA_					0	0	0		ENST00000393800.6_2_11:68381975-68382077:+|nuORF	ENST00000393800.6_2_11:68381975-68382077:+|nuORF	ENST00000393800.6_2_11:68381975-68382077:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.2589111328125	2	549.800749	1097.58694	-0.52452	-0.00028838	-0.99703	-0.00054817	-1.5215	-0.00083655	549.7999279575748	40.027	0.44906	39.878	39.591	40.04	-0.1497					15	11	2	0	0	0	0.03519	1	3430	3430		31.53	1.0262	1	121650			60699	13468	42630	42691	65953	65953					0.042054318516193234
PSSVQGALVA	10	Unmodified	_PSSVQGALVA_					0	0	0			REV__SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|19|3|sense	REV__SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|19|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7585754394531	2	464.758549	927.502546	0.13678	6.3568E-05	0.034339	1.5959E-05	0.17111	7.9527E-05	464.7584167411413	53.265	0.79156	53.36	52.98	53.771	0.095669					54	21	4	0	0	0	0.941	1	5688	5688		51.335	1.7994	1	2577300	+		60700	37659	42631	42692	65954	65954					0.03589481034862274
PSSVVKNTI	9	Unmodified	_PSSVVKNTI_					0	0	0		ENST00000601004.1_1_19:23567552-23568092:+|nuORF	ENST00000601004.1_1_19:23567552-23568092:+|nuORF	ENST00000601004.1_1_19:23567552-23568092:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7532958984375	2	472.7742	943.533846	-0.62717	-0.00029651	2.0728	0.00097998	1.4456	0.00068346	472.7748168017771	35.618	0.64555	35.596	35.271	35.917	-0.021763					26	16	2	0	0	0	0.024495	1	2747	2747		34.173	0	1	163440			60701	17507	42632	42693	65955	65955					0.05982054068965681
PSSWLALL	8	Unmodified	_PSSWLALL_					0	0	0			REV__ENST00000310418.8_1_5:175819519-175819774:-|nuORF	REV__ENST00000310418.8_1_5:175819519-175819774:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2250061035156	2	443.755278	885.496004	-0.36397	-0.00016151	0.14373	6.3781E-05	-0.22024	-9.7731E-05	443.75547824637954	27.36	0.93113	27.36	26.993	27.924	0					34	24	3	0	0	0	0.027866	1	1431	1431		29.842	0	1	346420	+		60702	30182	42633	42694	65956	65956					0.04867587874127821
PSTAGERSQ	9	Unmodified	_PSTAGERSQ_					0	0	0			REV__nc|ENSG00000259642|Q8NBB2|ST20-AS1	REV__nc|ENSG00000259642|Q8NBB2|ST20-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.26300048828125	2	466.725238	931.435923	0.11596	5.4119E-05	0.4808	0.0002244	0.59675	0.00027852	466.723481921765	50.675	0.13608	50.526	50.425	50.561	-0.14916					5	3	2	0	0	0	0.024506	1	5294	5294		23.042	0	1	66697	+		60703	37182	42634	42695	65957	65957					-0.03253754527042929
PSTANCWTS	9	Unmodified	_PSTANCWTS_					0	0	0		CTSD|p.Q90Sfs*43|1|0.2|ENSG00000117984|chr11:1759600-1759600|G/-|frameshift_variant	CTSD|p.Q90Sfs*43|1|0.2|ENSG00000117984|chr11:1759600-1759600|G/-|frameshift_variant	CTSD|p.Q90Sfs*43|1|0.2|ENSG00000117984|chr11:1759600-1759600|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.23736572265625	2	483.702917	965.391281	-0.42282	-0.00020452	-2.898	-0.0014017	-3.3208	-0.0016063	483.70199185828346	40.391	0.46976	40.242	40.004	40.474	-0.1497					19	12	3	0	0	0	0.024405	1	3532	3532		27.882	10.414	1	1174400			60704	604	42635	42696	65958	65958					-0.09279901664729096
PSTFGGLGSLS	11	Unmodified	_PSTFGGLGSLS_					0	0	0		ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.75921630859375	2	511.761289	1021.50803	-0.64231	-0.00032871	-4.1343	-0.0021158	-4.7766	-0.0024445	511.759131468698	26.102	0.9203	26.102	25.611	26.531	0					62	21	4	0	0	0	0.48498	1	1291	1291		77.318	3.1526	1	2492500			60705	3240	42636	42697	65959	65959					-0.001868401733418068
PSTFTWKRGK	10	Unmodified	_PSTFTWKRGK_					0	0	0			REV__ENST00000409257.9_1_17:76198618-76200771:+|nuORF	REV__ENST00000409257.9_1_17:76198618-76200771:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5441589355469	3	403.224257	1206.65094	0.75335	0.00030377	-1.8467	-0.00074463	-1.0933	-0.00044086	403.22341565179295	25.232	0.46344	25.061	24.825	25.288	-0.17078					11	10	2	0	0	0	0.03519	1	1146	1146		19.263	0	1	69870	+		60706	31952	42637	42698	65960	65960					0.055882120085243514
PSTGAPSKKS	10	Unmodified	_PSTGAPSKKS_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7865905761719	2	480.261456	958.50836	-0.2828	-0.00013582	0.31778	0.00015262	0.03498	1.6799E-05	480.26125186539997	25.176	0.38286	25.005	24.781	25.163	-0.17078					14	8	2	0	0	0	0.03519	1	1147	1147		72.879	21.687	1	125940			60707	751	42638	42699	65961	65961					0.02744579546526893
PSTGAPSKKS	10	Unmodified	_PSTGAPSKKS_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.261456	958.50836	-0.14465	-6.9469E-05	-0.22463	-0.00010788	-0.36928	-0.00017735	480.26112942249654	25.395	0.54767	25.168	24.887	25.434	-0.22683	0.10059	0.0001314	NaN	72.879	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203040			60708	751	42638	42699							0.02744579546526893
PSTGAPSKKS	10	Unmodified	_PSTGAPSKKS_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.261456	958.50836	0.95493	0.00045862	-0.99179	-0.00047632	-0.03686	-1.7702E-05	480.2608014019828	25.202	0.42079	25.03	24.821	25.241	-0.17151	-0.03766	-0.00060548	NaN	72.879	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130470			60709	751	42638	42699							0.02744579546526893
PSTKLQGEV	9	Unmodified	_PSTKLQGEV_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75390625	2	479.763832	957.513111	-0.71761	-0.00034428	0.57554	0.00027612	-0.14207	-6.8161E-05	479.76397924415204	47.771	0.52419	47.83	47.585	48.109	0.059097					22	15	2	0	0	0	0.024319	1	4794	4794		39.253	0	1	291570			60710	945	42639	42700	65962	65962					0.03265463689297121
PSTLQMWAN	9	Unmodified	_PSTLQMWAN_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2508544921875	2	524.250034	1046.48552	-0.22426	-0.00011757	3.2277	0.0016921	3.0034	0.0015745	524.2515779513772	53.725	0.68845	53.528	53.201	53.889	-0.19739					51	20	3	0	0	0	0.59099	1	5629	5629		53.351	0	1	4528800			60711	5942	42640	42701	65963	65963					-0.03586762842610369
PSTNVSLPR	9	Unmodified	_PSTNVSLPR_					0	0	0			REV__ENST00000309061.11_1_19:5790266-5791118:-|nuORF	REV__ENST00000309061.11_1_19:5790266-5791118:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7593078613281	2	485.769448	969.524344	-0.71668	-0.00034814	0.16561	8.0449E-05	-0.55107	-0.00026769	485.76936822373204	37.535	0.56198	37.472	37.163	37.725	-0.063385					27	15	2	0	0	0	0.023478	1	3014	3014		88.177	34.825	1	1692600	+		60712	30156	42641	42702	65964	65964					0.038362857834158604
PSTPEVSAI	9	Unmodified	_PSTPEVSAI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2689514160156	2	450.737283	899.460012	-1.0854	-0.00048925	-2.1778	-0.00098162	-3.2632	-0.0014709	450.73578647390383	38.924	0.94942	38.95	38.33	39.28	0.026321					32	25	2	0	0	0	0.024323	1	3192	3192		44.117	25.792	1	546620			60713	6479	42642	42703	65965	65965					0.006260859066173907
PSTPPKPRS	9	Unmodified	_PSTPPKPRS_					0	0	0			REV__ENST00000370060.5_1_X:153138149-153151553:-|nuORF	REV__ENST00000370060.5_1_X:153138149-153151553:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.23760986328125	2	483.771991	965.529429	-0.23453	-0.00011346	-2.1869	-0.001058	-2.4214	-0.0011714	483.77068550817364	40.738	0.63701	40.513	40.332	40.969	-0.225					31	16	3	0	0	0	0.024381	1	3549	3549		37.159	6.6555	1	762150	+		60714	31108	42643	42704	65966	65966					0.045285896460427466
PSTRSVQSL	9	Unmodified	_PSTRSVQSL_					0	0	0			REV__LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|9|1|sense	REV__LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|9|1|sense	MSMS	OPSCC_39_ClassI_Rep-1	1	487.7668151855469	2	487.766906	973.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.926	1	39.926	39.426	40.426	0								0	0	0	0.03995	1	3473	3473		113.41	6.7285	1		+		60715	36340	42644	42705	65967	65967					0.03143981920800343
PSTSSTMSAQA	11	Unmodified	_PSTSSTMSAQA_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.235595703125	2	534.237321	1066.46009	-0.34514	-0.00018439	-2.1591	-0.0011535	-2.5042	-0.0013378	534.2359601468546	58.259	0.62697	58.351	58.118	58.745	0.091217					48	16	5	0	0	0	0.97926	1	6516	6516		41.427	2.1738	1	2911100			60716	5616	42645	42706	65968	65968					-0.0704828215566522
PSTTTNENAL	10	Unmodified	_PSTTTNENAL_					0	0	0			REV__ENSG00000168631|ENST00000462446|MUCL3	REV__ENSG00000168631|ENST00000462446|MUCL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.251953125	2	524.251286	1046.48802	-0.88442	-0.00046366	1.8076	0.00094764	0.92319	0.00048399	524.2521164030851	53.594	0.73386	53.458	53.134	53.867	-0.13617					50	21	3	0	0	0	0.66532	1	5618	5618		69.628	6.6492	1	4958800	+		60717	26279	42646	42707	65969	65969					-0.03336635903951901
PSTVVAHSPV	10	Unmodified	_PSTVVAHSPV_					0	0	0			REV__ENST00000362021.8_1_11:47437051-47437270:+|nuORF	REV__ENST00000362021.8_1_11:47437051-47437270:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2719421386719	2	497.271824	992.529095	0.26598	0.00013226	0.62195	0.00030928	0.88793	0.00044154	497.2720541478914	89.561	1.6965	89.577	89.133	90.83	0.015724					66	40	3	0	0	0	0.98754	1	11226	11226		47.657	1.6851	1	1230800	+		60718	30962	42647	42708	65970	65970					0.03253169926188093
PSVAMHNL	8	Unmodified	_PSVAMHNL_					0	0	0			REV__ENST00000568593.1_1_3:47421682-47421838:-|nuORF	REV__ENST00000568593.1_1_3:47421682-47421838:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.2745361328125	2	434.720913	867.427273	-0.19584	-8.5136E-05	-3.379	-0.0014689	-3.5749	-0.0015541	434.7192085339025	48.088	0.46904	48.088	47.875	48.344	0					21	13	3	0	0	0	0.027866	1	4852	4852		29.15	6.1071	1	253910	+		60719	35346	42648	42709	65971	65971					-0.011743996972313653
PSVAPRALTR	10	Unmodified	_PSVAPRALTR_					0	0	0		ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.785400390625	2	534.31964	1066.62473	-0.039972	-2.1358E-05	-0.2452	-0.00013102	-0.28518	-0.00015238	534.3192926285675	23.899	0.60417	23.684	23.305	23.909	-0.2151					33	13	4	0	0	0	0.03519	1	1007	1007		14.865	0	1	144290			60720	12504	42649	42710	65972	65972					0.09407942837060546
PSVEKKIII	9	Unmodified	_PSVEKKIII_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8313598632812	2	513.831517	1025.64848	-0.14252	-7.323E-05	-0.26151	-0.00013437	-0.40403	-0.0002076	513.8313241570768	67.575	1.0663	67.286	67.03	68.096	-0.28835					76	26	5	0	0	0	0.20967	1	8039	8039		87.754	5.4493	1	6087100	+		60721	22684	42650	42711	65973	65973					0.13668363550914364
PSVEKKIII	9	Unmodified	_PSVEKKIII_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.831517	1025.64848	0.69636	0.00035781	-1.1804	-0.00060654	-0.48407	-0.00024873	513.8309180055152	67.698	0.50363	67.443	67.236	67.74	-0.25516	0.081755	-0.00112	NaN	87.754	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110260	+		60722	22684	42650	42711							0.13668363550914364
PSVEKKIII	9	Unmodified	_PSVEKKIII_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.831517	1025.64848	-0.068483	-3.5189E-05	-0.31025	-0.00015941	-0.37873	-0.0001946	513.8314074885798	67.692	0.45877	67.459	67.217	67.676	-0.23375	0.097163	-0.00022576	NaN	87.754	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78975	+		60723	22684	42650	42711							0.13668363550914364
PSVEKKIII	9	Unmodified	_PSVEKKIII_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.831517	1025.64848	-0.20762	-0.00010668	-0.36394	-0.000187	-0.57155	-0.00029368	513.8313095106467	67.594	0.51028	67.355	67.159	67.669	-0.23814	-0.0060693	-0.00028093	NaN	87.754	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106170	+		60724	22684	42650	42711							0.13668363550914364
PSVEKLDAQ	9	Unmodified	_PSVEKLDAQ_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7794494628906	2	493.761289	985.508025	0.38018	0.00018772	0.52261	0.00025805	0.9028	0.00044577	493.7612853718173	57.344	0.41395	57.169	56.931	57.345	-0.1749					13	10	2	0	0	0	0.01736	1	6439	6439		145.16	5.1852	1	176120	+		60725	23169	42651	42712	65974	65974					0.014691598266722394
PSVERSELQLT	11	Unmodified	_PSVERSELQLT_					0	0	0			REV__ENST00000478858.5_1_1:23767870-23768724:-|nuORF	REV__ENST00000478858.5_1_1:23767870-23768724:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7442321777344	3	420.226103	1257.65648	-0.4853	-0.00020394	-3.6678	-0.0015413	-4.1531	-0.0017453	420.22442399330265	27.813	0.60131	27.813	27.361	27.963	0					21	15	3	0	0	0	0.024747	1	1508	1508		15.921	0	1	87934	+		60726	33379	42652	42713	65975	65975					0.037958460097115676
PSVHSIAQAR	10	Unmodified	_PSVHSIAQAR_					0	0	0		nc|ENSG00000133943|Q7Z3D6-6|DGLUCY	nc|ENSG00000133943|Q7Z3D6-6|DGLUCY	nc|ENSG00000133943|Q7Z3D6-6|DGLUCY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2696533203125	2	533.293622	1064.57269	1.4009	0.00074711	-0.98817	-0.00052698	0.41277	0.00022013	533.2925474331191	82.728	0.77269	82.618	82.379	83.152	-0.11006					26	17	3	0	0	0	0.03519	1	10363	10363		44.377	0.26039	1	87040			60727	18283	42653	42714	65976	65976					0.042987794233113164
PSVKGKIH	8	Unmodified	_PSVKGKIH_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2562255859375	2	433.266345	864.518136	0.092973	4.0282E-05	1.062	0.00046013	1.155	0.00050041	433.2668589001284	103.15	0.12675	103.16	103.1	103.22	0.0054245					4	2	2	0	0	0	0.027866	1	13197	13197		38.806	0	1	27377			60728	2412	42654	42715	65977	65977					0.08045812342561476
PSVKKRFWRLE	11	Unmodified	_PSVKKRFWRLE_					0	0	0			REV__ENSG00000124557|ENST00000684113|BTN1A1	REV__ENSG00000124557|ENST00000684113|BTN1A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2684020996094	3	482.617377	1444.8303	0.34866	0.00016827	-2.0501	-0.00098943	-1.7015	-0.00082115	482.61627348925833	46.599	0.34984	46.503	46.295	46.645	-0.096649					15	9	2	0	0	0	0.024834	1	4488	4488		17.833	8.187	1	323420	+		60729	22771	42655	42716	65978	65978					0.12568096296490694
PSVKPLVDH	9	Unmodified	_PSVKPLVDH_					0	0	0			REV__nc|ENSG00000109458|Q13480-2|GAB1	REV__nc|ENSG00000109458|Q13480-2|GAB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.2831115722656	2	496.282192	990.549831	-0.19641	-9.7474E-05	3.3749	0.0016749	3.1785	0.0015774	496.28354613903764	20.322	0.92207	20.155	19.62	20.542	-0.16774					42	18	4	0	0	0	0.85329	1	529	529		35.618	0.41757	1	370340	+		60730	21793	42656	42717	65979	65979					0.05417760305851971
PSVLLEVE	8	Unmodified	_PSVLLEVE_					0	0	0			REV__nc|ENSG00000166840|Q969I3-2|GLYATL1	REV__nc|ENSG00000166840|Q969I3-2|GLYATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2660217285156	2	443.250026	884.485499	-0.25552	-0.00011326	-2.2088	-0.00097906	-2.4643	-0.0010923	443.2489295267485	26.344	0.65191	26.321	26.042	26.694	-0.023087					38	15	3	0	0	0	0.027866	1	1319	1319		25.45	0	1	516300	+		60731	36893	42657	42718	65980	65980					0.03863560429056179
PSVNGEERM	9	Unmodified	_PSVNGEERM_					0	0	0			REV__ENST00000526682.5_1_11:36397936-36397999:+|nuORF	REV__ENST00000526682.5_1_11:36397936-36397999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7732849121094	2	509.734748	1017.45494	-0.44775	-0.00022823	-0.32894	-0.00016767	-0.77669	-0.00039591	509.73457540829304	21.99	0.33742	21.915	21.745	22.082	-0.075296					9	6	2	0	0	0	0.024539	1	735	735		35.618	5.7767	1	24822	+		60732	34456	42658	42719	65981	65981					-0.053085412276459465
PSVNGEERM	9	Unmodified	_PSVNGEERM_					0	0	0			REV__ENST00000526682.5_1_11:36397936-36397999:+|nuORF	REV__ENST00000526682.5_1_11:36397936-36397999:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.734748	1017.45494	-0.78615	-0.00040073	0.34366	0.00017518	-0.44249	-0.00022555	509.7343077101086	21.894	0.33644	21.894	21.676	22.012	0	-0.010514	0.00052003	NaN	35.618	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20055	+		60733	34456	42658	42719							-0.053085412276459465
PSVPDQNAVP	10	Unmodified	_PSVPDQNAVP_					0	0	0			REV__ENSG00000181072|ENST00000680005|CHRM2	REV__ENSG00000181072|ENST00000680005|CHRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.305419921875	2	512.258914	1022.50327	-0.18487	-9.4699E-05	-1.0974	-0.00056215	-1.2823	-0.00065685	512.2579026789774	66.235	0.42258	65.954	65.672	66.095	-0.28149					19	10	3	0	0	0	0.03519	1	7831	7831		23.523	4.1627	1	124860	+		60734	27382	42659	42720	65982	65982					-0.007077243161006663
PSVPIRLTTA	10	Unmodified	_PSVPIRLTTA_					0	0	0			REV__ENSG00000196531|ENST00000454682|NACA	REV__ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.8177490234375	2	527.816399	1053.61824	-0.052119	-2.7509E-05	3.8436	0.0020287	3.7914	0.0020012	527.8179147579245	80.622	0.98825	80.476	80.076	81.064	-0.146					43	23	3	0	0	0	0.98527	1	9664	9664		47.96	0.043923	1	559090	+		60735	28191	42660	42721	65983	65983					0.09358004885712035
PSVPNVLTAI	10	Unmodified	_PSVPNVLTAI_					0	0	0		nc|ENSG00000160226|O43822-4|CFAP410;ENST00000462742.1_1_21:45750083-45750963:-|nuORF	nc|ENSG00000160226|O43822-4|CFAP410	nc|ENSG00000160226|O43822-4|CFAP410	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.7490234375	2	505.797675	1009.5808	-0.40377	-0.00020423	1.4617	0.00073932	1.0579	0.00053509	505.79819339178954	26.526	1.5692	26.526	26.083	27.653	0					80	39	3	0	0	0	0.03519	1	1437	1437		40.778	17.255	1	264660			60736	18424	42661	42722	65984	65984					0.07638913620087351
PSVPVALNI	9	Unmodified	_PSVPVALNI_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.G414Vfs*16|1|0.12|ENSG00000135829|chr1:182860092-182860093|-/TCTT|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.258544921875	2	455.273835	908.533118	-0.22623	-0.000103	-3.3679	-0.0015333	-3.5941	-0.0016363	455.2721522662984	33.614	0.61137	33.621	33.388	33.999	0.0066261					29	15	3	0	0	0	0.024294	1	2463	2463		21.96	0	1	206040			60737	4938	42662	42723	65985	65985					0.07519259419893842
PSVQFSKALI	10	Unmodified	_PSVQFSKALI_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.31884765625	2	545.318774	1088.623	-0.94688	-0.00051635	0.23397	0.00012759	-0.71291	-0.00038876	545.3188073728357	81.65	0.9371	81.65	81.258	82.195	0					61	22	4	0	0	0	0.55353	1	10193	10193		82.241	5.4664	1	2259600			60738	5731	42663	42724	65986	65986					0.08222889028479585
PSVQRDVL	8	Unmodified	_PSVQRDVL_					0	0	0		ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	457.258717	912.50288	-0.12021	-5.4966E-05	0.96009	0.00043901	0.83988	0.00038404	457.258741913222	24.492	0.61755	24.492	24.08	24.697	0					21	13	3	0	0	0	0.027866	1	1089	1089		18.324	0	1	74529			60739	7642	42664	42725	65987	65987					0.04312900754723614
PSVQRDVL	8	Unmodified	_PSVQRDVL_					0	0	0		ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.258717	912.50288	0.51224	0.00023423	-0.29198	-0.00013351	0.22026	0.00010072	457.25829568941816	24.419	0.68266	24.498	24.048	24.731	0.078344	-0.0022261	-0.00086863	NaN	18.324	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81946			60740	7642	42664	42725							0.04312900754723614
PSVRNVEVI	9	Unmodified	_PSVRNVEVI_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1;ENST00000517561.1_1_5:77417682-77436990:-|nuORF	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7919006347656	2	506.792924	1011.57129	-1.2623	-0.00063974	-0.35435	-0.00017958	-1.6167	-0.00081933	506.7928567473784	44.161	1.3823	44.161	43.765	45.147	0					125	39	6	0	0	0	0.39228	1	4257	4257		66.429	4.3219	1	120750000			60741	4657	42665	42726	65988	65988					0.06597145334569632
PSVRNVEVI	9	Unmodified	_PSVRNVEVI_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1;ENST00000517561.1_1_5:77417682-77436990:-|nuORF	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.7926025390625	2	506.792924	1011.57129	-0.35557	-0.0001802	-1.1749	-0.00059544	-1.5305	-0.00077565	506.79245433045855	44.155	1.3845	44.192	43.888	45.272	0.036903					127	39	6	0	0	0	0.39228	1	4126	4126		66.429	0	1	117970000			60742	4657	42665	42726	65989	65989					0.06597145334569632
PSVRQLAL	8	Unmodified	_PSVRQLAL_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5;ENST00000432916.5_1_22:45122508-45132738:+|nuORF	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.27166748046875	2	442.271627	882.528701	0.20446	9.0428E-05	-0.10084	-4.46E-05	0.10362	4.5828E-05	442.27144999075483	46.534	1.0207	46.534	46.056	47.076	0					68	27	4	0	0	0	0.39824	1	4595	4595		97.473	1.2823	1	4307000			60743	9569	42666	42727	65990	65990					0.08273794996978268
PSVRQLAL	8	Unmodified	_PSVRQLAL_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5;ENST00000432916.5_1_22:45122508-45132738:+|nuORF	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2713928222656	2	442.271627	882.528701	0.042251	1.8687E-05	0.084828	3.7517E-05	0.12708	5.6204E-05	442.27152393372546	46.412	0.93131	46.464	46.167	47.099	0.051395					73	25	4	0	0	0	0.46709	1	4535	4535		88.643	0.88857	1	4408000			60744	9569	42666	42727	65991	65991					0.08273794996978268
PSVRSRLL	8	Unmodified	_PSVRSRLL_					0	0	0		ENST00000301732.9_1_16:2378755-2379810:-|nuORF	ENST00000301732.9_1_16:2378755-2379810:-|nuORF	ENST00000301732.9_1_16:2378755-2379810:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2740478515625	2	464.290351	926.566149	0.041352	1.9199E-05	3.8494	0.0017873	3.8908	0.0018065	464.291794066243	51.592	0.83766	51.592	51.248	52.085	0					37	23	3	0	0	0	0.027866	1	5552	5552		40.573	18.87	1	830430			60745	11933	42667	42728	65992	65992					0.09992886262625689
PSVTEPLL	8	Unmodified	_PSVTEPLL_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.86077880859375	2	428.244744	854.474934	-0.4024	-0.00017232	-2.4963	-0.001069	-2.8987	-0.0012414	428.24355917786056	21.508	0.76929	21.418	20.961	21.73	-0.090092					23	15	2	0	0	0	0.027866	1	628	628		31.955	12.595	1	56822	+		60746	27601	42668	42729	65993	65993					0.041875777746327
PSVTEPLL	8	Unmodified	_PSVTEPLL_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	428.244744	854.474934	0.083225	3.5641E-05	-2.9602	-0.0012677	-2.877	-0.001232	428.2432706483111	21.373	0.67426	21.444	21.155	21.83	0.071487	-0.035044	-8.7317E-05	NaN	31.955	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26113	+		60747	27601	42668	42729							0.041875777746327
PSVTEPLL	8	Unmodified	_PSVTEPLL_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	428.244744	854.474934	0.73233	0.00031362	-4.0081	-0.0017165	-3.2758	-0.0014028	428.2429575263684	21.605	0.67217	21.428	21.016	21.688	-0.17721	-0.051283	-0.00098487	NaN	31.955	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79924	+		60748	27601	42668	42729							0.041875777746327
PSVTEPLL	8	Unmodified	_PSVTEPLL_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	428.244744	854.474934	0.14223	6.0909E-05	-3.3846	-0.0014494	-3.2424	-0.0013885	428.2431613290803	21.838	0.67597	21.648	21.177	21.853	-0.19072	0.16837	-0.00045085	NaN	31.955	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85014	+		60749	27601	42668	42729							0.041875777746327
PSVWIPVP	8	Unmodified	_PSVWIPVP_					0	0	0		ENST00000529132.1_1_11:67172517-67173239:+|nuORF	ENST00000529132.1_1_11:67172517-67173239:+|nuORF	ENST00000529132.1_1_11:67172517-67173239:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.20819091796875	2	447.757821	893.501089	0.44519	0.00019934	-3.8357	-0.0017175	-3.3905	-0.0015181	447.75600781468466	21.503	0.28491	21.326	21.209	21.494	-0.17721					7	5	2	0	0	0	0.027866	1	691	691		13.775	0	1	24701			60750	16202	42669	42730	65994	65994					0.05007891736761394
PSWFLFGLF	9	Unmodified	_PSWFLFGLF_					0	0	0			REV__nc|ENSG00000103056|Q9NY59-2|SMPD3	REV__nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8106689453125	2	557.292028	1112.5695	0.3751	0.00020904	-3.5765	-0.0019931	-3.2014	-0.0017841	557.2880558782838	88.95	0.884	88.929	88.567	89.451	-0.021645					27	20	2	0	0	0	0.024535	1	11255	11255		18.324	0	1	100280	+		60751	21352	42670	42731	65995	65995					0.017721363166174342
PSWGLAAEEP	10	Unmodified	_PSWGLAAEEP_					0	0	0			REV__ENSG00000283247|ENST00000636578|CCDC201	REV__ENSG00000283247|ENST00000636578|CCDC201	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3115234375	2	528.753464	1055.49238	-0.13851	-7.3235E-05	-0.044655	-2.3611E-05	-0.18316	-9.6847E-05	528.7533189869524	60.349	0.82446	60.152	59.765	60.589	-0.19742					52	20	4	0	0	0	0.03519	1	6756	6756		26.693	0	1	846090	+		60752	29242	42671	42732	65996	65996					-0.03315126690381476
PSWHALIE	8	Unmodified	_PSWHALIE_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2665100097656	2	476.747985	951.481417	-0.1159	-5.5256E-05	-3.0935	-0.0014748	-3.2094	-0.0015301	476.74679381575635	31.681	0.9225	31.496	30.984	31.907	-0.18503					49	22	4	0	0	0	0.027866	1	2087	2087		24.203	0	1	1154100	+		60753	20735	42672	42733	65997	65997					0.0037351572600528016
PSWSEDETL	9	Unmodified	_PSWSEDETL_					0	0	0		ENST00000474505.5_1_3:150264589-150282188:+|nuORF;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	ENST00000474505.5_1_3:150264589-150282188:+|nuORF	ENST00000474505.5_1_3:150264589-150282188:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.796142578125	2	532.232561	1062.45057	-1.449	-0.00077118	-1.9598	-0.0010431	-3.4087	-0.0018142	532.2313267440693	35.872	0.45985	35.872	35.57	36.029	0					15	11	2	0	0	0	0.024381	1	2784	2784		37.159	0	1	49110			60754	5781	42673	42734	65998	65998					-0.0781572716955452
PSWVLKKQRP	10	Unmodified	_PSWVLKKQRP_					0	0	0		ENST00000249364.8_1_7:128388716-128388830:+|nuORF	ENST00000249364.8_1_7:128388716-128388830:+|nuORF	ENST00000249364.8_1_7:128388716-128388830:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.86865234375	2	619.87204	1237.72953	-1.6623	-0.0010304	-2.7538	-0.001707	-4.4161	-0.0027374	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	1.0393	1	11327	11327		40.778	0	1	1925500			60755	11340	42674	42735	65999	65999					0.1201706431365892
PSWYPEIL	8	Unmodified	_PSWYPEIL_					0	0	0		ENST00000275732.5_1_7:100286590-100286938:-|nuORF	ENST00000275732.5_1_7:100286590-100286938:-|nuORF	ENST00000275732.5_1_7:100286590-100286938:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.8106689453125	2	502.758018	1003.50148	-0.34813	-0.00017502	0.059746	3.0038E-05	-0.28838	-0.00014499	502.75764285766644	69.227	0.53462	69.242	69.053	69.588	0.015121					21	13	2	0	0	0	0.027866	1	8250	8250		25.45	0	1	754730			60756	11691	42675	42736	66000	66000					-0.00012733334051517886
PSYGLVFRH	9	Unmodified	_PSYGLVFRH_					0	0	0		QRSL1|p.S216F|1|0.09|ENSG00000130348|chr6:106652298-106652298|C/T|missense_variant	QRSL1|p.S216F|1|0.09|ENSG00000130348|chr6:106652298-106652298|C/T|missense_variant	QRSL1|p.S216F|1|0.09|ENSG00000130348|chr6:106652298-106652298|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2872314453125	2	538.287808	1074.56106	-1.1584	-0.00062354	0.17065	9.1861E-05	-0.98772	-0.00053168	538.2876712331554	21.498	1.6708	21.498	20.949	22.619	0					92	34	4	0	0	0	0.94809	1	668	668		29.15	0	1	419060			60757	19017	42676	42737	66001	66001					0.02676582399999461
PSYKHGWGI	9	Unmodified	_PSYKHGWGI_					0	0	0			REV__ENSG00000104941|ENST00000221538|RSPH6A	REV__ENSG00000104941|ENST00000221538|RSPH6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7479858398438	2	522.766709	1043.51886	-0.02331	-1.2186E-05	-1.3532	-0.00070742	-1.3765	-0.0007196	522.7656194542348	75.093	0.62322	74.83	74.489	75.112	-0.26326					33	14	4	0	0	0	0.024511	1	8828	8828		25.574	9.9322	1	198140	+		60758	21483	42677	42738	66002	66002					-0.0011539300837739574
PSYKHGWGI	9	Unmodified	_PSYKHGWGI_					0	0	0			REV__ENSG00000104941|ENST00000221538|RSPH6A	REV__ENSG00000104941|ENST00000221538|RSPH6A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.766709	1043.51886	-0.085977	-4.4946E-05	-1.3459	-0.00070358	-1.4319	-0.00074853	522.7656567890524	75.193	0.5452	74.917	74.638	75.183	-0.27573	0.059905	-4.2529E-05	NaN	19.104	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117990	+		60759	21483	42677	42738							-0.0011539300837739574
PSYKHGWGI	9	Unmodified	_PSYKHGWGI_					0	0	0			REV__ENSG00000104941|ENST00000221538|RSPH6A	REV__ENSG00000104941|ENST00000221538|RSPH6A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.766709	1043.51886	0.43293	0.00022632	-1.0704	-0.00055955	-0.63742	-0.00033322	522.7652612096231	75.007	0.63229	74.824	74.555	75.187	-0.18279	-0.032615	0.00024554	NaN	19.104	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126930	+		60760	21483	42677	42738							-0.0011539300837739574
PSYPQLPLL	9	Unmodified	_PSYPQLPLL_					0	0	0		ENST00000515982.1_2:234197345-234197513:+|nuORF	ENST00000515982.1_2:234197345-234197513:+|nuORF	ENST00000515982.1_2:234197345-234197513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8150634765625	2	514.294768	1026.57498	-0.94657	-0.00048682	-4.081	-0.0020989	-5.0276	-0.0025857	514.7956225736219	44.761	0.3111	44.761	44.587	44.898	0					12	8	2	0	0	0	0.024354	1	4291	4291		23.042	0	1	181160			60761	15911	42678	42739	66003	66003					0.0627581510843811
PSYSSKSGKR	10	Unmodified	_PSYSSKSGKR_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2700805664062	2	548.790912	1095.56727	-0.71271	-0.00039113	-0.92645	-0.00050843	-1.6392	-0.00089955	548.7901712448798	38.929	0.65281	38.706	38.497	39.149	-0.22311					30	17	2	0	0	0	0.03519	1	3247	3247		19.104	0	1	365630			60762	5366	42679	42740	66004	66004					0.023310558408638826
PTAARAGVL	9	Unmodified	_PTAARAGVL_					0	0	0		ENST00000562588.5_1_16:53737575-53737698:-|nuORF	ENST00000562588.5_1_16:53737575-53737698:-|nuORF	ENST00000562588.5_1_16:53737575-53737698:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.87066650390625	2	428.255977	854.497401	0.62834	0.00026909	-1.2001	-0.00051395	-0.57176	-0.00024486	428.25503024726925	37.026	1.0487	36.833	36.103	37.152	-0.193					39	26	3	0	0	0	0.023239	1	2952	2952		84.916	13.62	1	280090			60763	16843	42680	42741	66005	66005					0.0643322196290228
PTAFPVAH	8	Unmodified	_PTAFPVAH_					0	0	0			REV__nc|ENSG00000090097|P57723-2|PCBP4	REV__nc|ENSG00000090097|P57723-2|PCBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2406921386719	2	420.224146	838.433738	1.2047	0.00050623	-0.56276	-0.00023649	0.64191	0.00026975	420.22436833211617	37.252	0.37163	37.252	37.042	37.414	0					16	9	2	0	0	0	0.027866	1	2995	2995		14.664	3.7985	1	212520	+		60764	20869	42681	42742	66006	66006					0.00805861525805085
PTAGPRLLP	9	Unmodified	_PTAGPRLLP_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.279296875	2	461.279452	920.544351	0.63098	0.00029106	-0.74354	-0.00034298	-0.11256	-5.1924E-05	461.2790168142663	42.709	0.4703	42.735	42.427	42.897	0.026012					35	12	3	0	0	0	0.40179	1	3914	3914		65.803	0	1	6928000			60765	4506	42682	42743	66007	66007					0.08090081514046688
PTAPPSPLAPS	11	Unmodified	_PTAPPSPLAPS_					0	0	0		ENST00000556123.1_1_14:69951566-69951632:+|nuORF	ENST00000556123.1_1_14:69951566-69951632:+|nuORF	ENST00000556123.1_1_14:69951566-69951632:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7784423828125	2	517.779482	1033.54441	-0.33842	-0.00017523	-0.49798	-0.00025784	-0.8364	-0.00043307	517.7792344958635	85.694	0.96869	85.636	85.355	86.324	-0.05761					30	22	2	0	0	0	0.024736	1	10751	10751		22.58	4.3176	1	369890			60766	16700	42683	42744	66008	66008					0.028980367233543802
PTAPSHKAL	9	Unmodified	_PTAPSHKAL_					0	0	0		nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.27947998046875	2	461.261259	920.507966	0.4171	0.00019239	-0.62078	-0.00028634	-0.20368	-9.395E-05	461.26080575490255	42.305	1.0394	42.331	41.857	42.897	0.026016					50	29	2	0	0	0	0.020004	1	3901	3901		60.972	9.6365	1	669050			60767	1522	42684	42745	66009	66009					0.04453204617323081
PTAPSHKAL	9	Unmodified	_PTAPSHKAL_					0	0	0		nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	461.261259	920.507966	-0.17984	-8.2955E-05	-0.64791	-0.00029886	-0.82775	-0.00038181	461.2606998125339	42.258	0.35638	42.028	41.899	42.255	-0.2303	-0.21258	-0.00020974	NaN	60.972	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47465			60768	1522	42684	42745							0.04453204617323081
PTAQEASVL	9	Unmodified	_PTAQEASVL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2851257324219	2	458.242732	914.470912	0.73724	0.00033783	-0.26391	-0.00012093	0.47333	0.0002169	458.24251711363047	58.909	0.68461	58.995	58.63	59.314	0.085682					39	18	3	0	0	0	0.023239	1	6588	6588		54.776	5.3348	1	1156800			60769	9882	42685	42746	66010	66010					0.010254882809135779
PTASIPSRT	9	Unmodified	_PTASIPSRT_					0	0	0			REV__ENST00000459892.5_1_2:26533861-26534227:-|nuORF	REV__ENST00000459892.5_1_2:26533861-26534227:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2546081542969	2	465.256174	928.497795	0.41893	0.00019491	-1.5203	-0.00070732	-1.1014	-0.00051241	465.2551639974379	36.834	1.4916	36.872	36.301	37.793	0.038044					66	39	3	0	0	0	0.6504	1	2910	2910		49.442	1.7842	1	2642500	+		60770	32832	42686	42747	66011	66011					0.03068596892092046
PTAVRKEATL	10	Unmodified	_PTAVRKEATL_					0	0	0			REV__ENSG00000117592|ENST00000340385|PRDX6	REV__ENSG00000117592|ENST00000340385|PRDX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.7794189453125	2	543.319306	1084.62406	-0.42783	-0.00023245	0.066635	3.6204E-05	-0.36119	-0.00019624	543.319328700345	35.222	0.42249	35.006	34.793	35.216	-0.21555					16	10	2	0	0	0	0.03519	1	2657	2657		25.574	0	1	126690	+		60771	22356	42687	42748	66012	66012					0.08513103397376653
PTCARCVRC	9	Carbamidomethyl (C)	_PTC(Carbamidomethyl (C))ARCVRC_	PTC(1)ARCVRC		PTC(38)ARC(-38)VRC(-54)		0	1	0		nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2407836914062	2	533.241163	1064.46777	-0.2285	-0.00012185	-0.48081	-0.00025639	-0.70932	-0.00037824	533.24080396962	34.218	0.94058	33.994	33.68	34.621	-0.22412					66	23	4	0	0	0	0.4752	1	2508	2508		60.972	7.6205	3	5360100			60772	8353	42688	42749	66013	66013	104				-0.061881246407438084
PTCSASFLSP	10	Unmodified	_PTCSASFLSP_					0	0	0			REV__ENST00000222329.8_1_19:42752140-42752251:-|nuORF	REV__ENST00000222329.8_1_19:42752140-42752251:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.2383728027344	2	505.236593	1008.45863	-0.031518	-1.5924E-05	3.1274	0.0015801	3.0959	0.0015641	505.2380293473984	63.726	1.0488	63.475	63.192	64.241	-0.25141					71	28	5	0	0	0	0.82838	1	7442	7442		58.782	2.0609	1	3948700	+		60773	29353	42689	42750	66014	66014					-0.04525871453790842
PTDIKPMVVA	10	Unmodified	_PTDIKPMVVA_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.794189453125	2	535.79936	1069.58417	-1.0683	-0.0005724	-3.2804	-0.0017577	-4.3488	-0.0023301	535.7974282861126	92.155	1.3684	92.155	91.641	93.009	0					96	32	4	0	0	0	1.0393	1	11680	11680		40.778	0	1	2271900	+		60774	22910	42690	42751	66015	66015					0.05215840402433969
PTDIKPMVVA	10	Unmodified	_PTDIKPMVVA_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7957153320312	2	535.79936	1069.58417	-0.81312	-0.00043567	-3.2964	-0.0017662	-4.1095	-0.0022019	535.7973521693403	92.15	1.4446	92.142	91.752	93.196	-0.0082932					102	34	4	0	0	0	0.82838	1	11657	11657		58.782	0.55203	1	2387200	+		60775	22910	42690	42751	66016	66016					0.05215840402433969
PTDIKPMVVA	10	Unmodified	_PTDIKPMVVA_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7948608398438	2	535.79936	1069.58417	-0.30484	-0.00016333	-3.8984	-0.0020888	-4.2033	-0.0022521	535.7970589564059	92.162	1.2672	92.171	91.832	93.099	0.0094147					82	30	4	0	0	0	0.96965	1	11610	11610		49.442	3.4693	1	2546600	+		60776	22910	42690	42751	66017	66017					0.05215840402433969
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.2832336425781	2	509.2844	1016.55425	0.055816	2.8426E-05	-1.1733	-0.00059757	-1.1175	-0.00056914	509.2837371815594	46.372	1.424	46.275	45.961	47.385	-0.096649					125	38	5	0	0	0	0.03201	6	4462	4439;4450;4462;4474;4486;4500		139.97	76.664	1	63158000			60777	3196	42691	42752	66018;66019;66020;66021;66022;66023	66020					0.046632247287675455
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2837219238281	2	509.2844	1016.55425	-0.25983	-0.00013233	-0.89191	-0.00045424	-1.1517	-0.00058656	509.28394543405994	46.63	1.4654	46.369	46.006	47.472	-0.26118					146	39	6	0	0	0	0.016758	7	4485	4462;4473;4485;4497;4509;4521;4560		153.04	81.158	1	78344000			60778	3196	42691	42752	66024;66025;66026;66027;66028;66029;66030	66026					0.046632247287675455
PTDPKVVVY	9	Unmodified	_PTDPKVVVY_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.2843322753906	2	509.2844	1016.55425	-0.7165	-0.0003649	-0.73855	-0.00037613	-1.455	-0.00074103	509.28406513380224	46.481	1.4413	46.279	45.967	47.408	-0.20226					142	39	5	0	0	0	0.01452	8	4485	4440;4449;4461;4473;4485;4498;4512;4529		186.09	106.64	1	104140000			60779	3196	42691	42752	66031;66032;66033;66034;66035;66036;66037;66038	66035					0.046632247287675455
PTDTNVLRY	9	Unmodified	_PTDTNVLRY_					0	0	0		ENSG00000174521|ENST00000311308|TTC9B	ENSG00000174521|ENST00000311308|TTC9B	ENSG00000174521|ENST00000311308|TTC9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7793579101562	2	539.780013	1077.54547	-1.1955	-0.00064529	0.89786	0.00048464	-0.29762	-0.00016065	539.7806961700732	44.383	1.219	44.279	44.03	45.249	-0.10468					68	32	4	0	0	0	0.016758	2	4142	4142;4154		153.04	0	1	2243100			60780	8480	42692	42753	66039;66040	66039					0.009802510922781948
PTDTNVLRY	9	Unmodified	_PTDTNVLRY_					0	0	0		ENSG00000174521|ENST00000311308|TTC9B	ENSG00000174521|ENST00000311308|TTC9B	ENSG00000174521|ENST00000311308|TTC9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7802734375	2	539.780013	1077.54547	-1.0762	-0.00058092	0.23717	0.00012802	-0.83906	-0.00045291	539.7802122558778	44.57	1.2205	44.325	44.08	45.3	-0.2444					58	32	4	0	0	0	0.014034	2	4159	4159;4177		166.68	0	1	2367800			60781	8480	42692	42753	66041;66042	66041					0.009802510922781948
PTDTNVLRY	9	Unmodified	_PTDTNVLRY_					0	0	0		ENSG00000174521|ENST00000311308|TTC9B	ENSG00000174521|ENST00000311308|TTC9B	ENSG00000174521|ENST00000311308|TTC9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.77978515625	2	539.780013	1077.54547	-1.8365	-0.00099132	0.73349	0.00039592	-1.103	-0.0005954	539.780553222796	44.545	1.3341	44.332	44.079	45.413	-0.2136					47	36	2	0	0	0	0.025498	2	4153	4153;4165		145.16	0	1	2928100			60782	8480	42692	42753	66043;66044	66043					0.009802510922781948
PTDVLRFAPL	10	Unmodified	_PTDVLRFAPL_					0	0	0			REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	REV__BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.805419921875	2	564.824224	1127.63389	-0.90811	-0.00051292	-4.4619	-0.0025202	-5.37	-0.0030331	564.8212580469053	56.688	0.39756	56.524	56.313	56.71	-0.16431					21	10	3	0	0	0	0.03519	1	6277	6277		27.882	15.071	1	240100	+		60783	19200	42693	42754	66045	66045					0.07518291402743671
PTEKTPII	8	Unmodified	_PTEKTPII_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.7659606933594	2	449.765843	897.517133	-0.15248	-6.8579E-05	0.30916	0.00013905	0.15669	7.0472E-05	449.765863237256	72.035	0.78065	71.829	71.459	72.24	-0.20613					56	18	4	0	0	0	1.0009	1	8453	8453		37.159	0	1	3598700	+		60784	27757	42694	42755	66046	66046					0.06427553183004875
PTELRNRVILA	11	Unmodified	_PTELRNRVILA_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.3843383789062	2	641.385511	1280.75647	0.67978	0.000436	-1.9683	-0.0012625	-1.2885	-0.00082645	641.3840767110357	101.35	0.78249	101.35	100.99	101.77	0					50	17	4	0	0	0	1.0557	1	12974	12974		23.523	0.94304	1	1108100	+		60785	20141	42695	42756	66047	66047					0.12732128134189225
PTFAALMPSH	10	Unmodified	_PTFAALMPSH_					0	0	0		ENST00000432065.6_1_9:131219620-131233603:+|nuORF;ENST00000446274.5_1_9:131219641-131231529:+|nuORF;ENST00000393527.7_1_9:131218522-131222450:+|nuORF;ENST00000604420.5_2_9:131219620-131231529:+|nuORF;ENST00000469582.6_1_9:131218522-131222838:+|nuORF;ENST00000444993.6_1_9:131218510-131222881:+|nuORF	ENST00000432065.6_1_9:131219620-131233603:+|nuORF	ENST00000432065.6_1_9:131219620-131233603:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3311767578125	2	536.268227	1070.5219	-1.0834	-0.000581	-3.5089	-0.0018817	-4.5923	-0.0024627	536.2660286253548	46.74	0.16206	46.546	46.415	46.577	-0.19387					5	4	2	0	0	0	0.03519	1	4515	4515		27.882	14.107	1	79635			60786	13450	42696	42757	66048	66048					-0.010538859458847583
PTFAALMPSH	10	Unmodified	_PTFAALMPSH_					0	0	0		ENST00000432065.6_1_9:131219620-131233603:+|nuORF;ENST00000446274.5_1_9:131219641-131231529:+|nuORF;ENST00000393527.7_1_9:131218522-131222450:+|nuORF;ENST00000604420.5_2_9:131219620-131231529:+|nuORF;ENST00000469582.6_1_9:131218522-131222838:+|nuORF;ENST00000444993.6_1_9:131218510-131222881:+|nuORF	ENST00000432065.6_1_9:131219620-131233603:+|nuORF	ENST00000432065.6_1_9:131219620-131233603:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.268227	1070.5219	-0.92288	-0.00049491	-11.042	-0.0059213	-11.965	-0.0064162	536.764549869002	46.758	0.39434	46.605	46.342	46.736	-0.15301	0.043765	-0.0020131	NaN	20.947	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94943			60787	13450	42696	42757							-0.010538859458847583
PTFAALMPSH	10	Unmodified	_PTFAALMPSH_					0	0	0		ENST00000432065.6_1_9:131219620-131233603:+|nuORF;ENST00000446274.5_1_9:131219641-131231529:+|nuORF;ENST00000393527.7_1_9:131218522-131222450:+|nuORF;ENST00000604420.5_2_9:131219620-131231529:+|nuORF;ENST00000469582.6_1_9:131218522-131222838:+|nuORF;ENST00000444993.6_1_9:131218510-131222881:+|nuORF	ENST00000432065.6_1_9:131219620-131233603:+|nuORF	ENST00000432065.6_1_9:131219620-131233603:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.268227	1070.5219	-0.72628	-0.00038948	-10.326	-0.0055373	-11.052	-0.0059268	536.2616518939236	46.481	0.5262	46.533	46.308	46.834	0.051395	-0.0286	-0.0012452	NaN	20.947	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155930			60788	13450	42696	42757							-0.010538859458847583
PTFSNNMSCQ	10	Unmodified	_PTFSNNMSCQ_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.8277587890625	2	564.726066	1127.43758	-0.70828	-0.00039998	0.9703	0.00054796	0.26202	0.00014797	564.7264590713276	34.39	0.73493	34.39	33.855	34.59	0					35	18	2	0	0	0	0.03519	1	2516	2516		47.657	17.34	1	146280	+		60789	20709	42697	42758	66049	66049					-0.12104204824959197
PTFSNNMSCQ	10	Unmodified	_PTFSNNMSCQ_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.8277587890625	2	564.726066	1127.43758	-0.93388	-0.00052739	0.99761	0.00056337	0.063724	3.5987E-05	565.2281725494196	33.754	0.87266	33.81	33.538	34.411	0.056572					36	21	2	0	0	0	0.03519	1	2431	2431		39.253	13.679	1	157400	+		60790	20709	42697	42758	66050	66050					-0.12104204824959197
PTGFIIPTL	9	Unmodified	_PTGFIIPTL_					0	0	0			REV__ENST00000491265.1_1_2:132249066-132249240:-|nuORF	REV__ENST00000491265.1_1_2:132249066-132249240:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.79266357421875	2	479.784036	957.553519	0.18946	9.0899E-05	-4.3808	-0.0021019	-4.1914	-0.002011	479.78172914912085	50.409	1.0418	50.258	49.817	50.859	-0.1512					66	30	4	0	0	0	0.024436	1	5348	5348		16.473	0	1	2764300	+		60791	33720	42698	42759	66051	66051					0.07304430079705071
PTGGGGGG	8	Unmodified	_PTGGGGGG_					0	0	0		ENSG00000170185|ENST00000307017|USP38;ENST00000446546.2_1_10:75545483-75546011:+|nuORF;ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1;ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.P813Lfs*22|1|0.21|ENSG00000214655|chr10:73793708-73793708|C/-|frameshift_variant;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA;ENSG00000185668|ENST00000373012|POU3F1	ENSG00000170185|ENST00000307017|USP38;ENSG00000161681|ENST00000293441|SHANK1;ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;REV__ENSG00000171056|ENST00000304501|SOX7;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000185668|ENST00000373012|POU3F1	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2850341796875	1	559.247066	558.239789	-0.17749	-9.9263E-05	-4.4838	-0.0025076	-4.6613	-0.0026068	559.2482266378513	78.346	0.16901	78.19	78.128	78.297	-0.15591					5	3	2	0	0	0	0.027866	1	9339	9339		19.36	0	1	23293			60792	5446;6889;8012;10562;26538;9462;9523;10827	42699	42760	66052	66052					-0.057000949102871346
PTGHHLRP	8	Unmodified	_PTGHHLRP_					0	0	0			REV__ENST00000555968.1_1_14:24036973-24037120:+|nuORF	REV__ENST00000555968.1_1_14:24036973-24037120:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.2486267089844	2	457.751393	913.488233	-0.80997	-0.00037076	-0.0093552	-4.2823E-06	-0.81932	-0.00037505	457.7510301746539	30.5	1.2041	30.5	30.096	31.3	0					73	28	5	0	0	0	0.96719	1	1982	1982		42.474	0.078325	1	3767600	+		60793	35020	42700	42761	66053	66053					0.028028733972291775
PTGLKNSFGQT	11	Unmodified	_PTGLKNSFGQT_					0	0	0		ENST00000561100.1_3_15:40212694-40212958:-|nuORF	ENST00000561100.1_3_15:40212694-40212958:-|nuORF	ENST00000561100.1_3_15:40212694-40212958:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.297607421875	2	575.29857	1148.58259	-0.98029	-0.00056396	-0.83834	-0.0004823	-1.8186	-0.0010463	575.2979402018559	44.084	0.75118	43.94	43.675	44.426	-0.14471					47	21	3	0	0	0	0.96309	1	4155	4155		45.022	4.964	1	3969400			60794	16814	42701	42762	66054	66054					0.014239226380595937
PTGPAPDPAR	10	Unmodified	_PTGPAPDPAR_					0	0	0		GAS2L1|p.P614Hfs*2|1|0.15|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant;ENSG00000185340|ENST00000616432|GAS2L1	GAS2L1|p.P614Hfs*2|1|0.15|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant	GAS2L1|p.P614Hfs*2|1|0.15|ENSG00000185340|chr22:29312284-29312284|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2728576660156	2	489.753798	977.493044	0.63007	0.00030858	3.0188	0.0014784	3.6488	0.001787	489.75514914078695	59.422	0.60392	59.173	58.93	59.533	-0.24841					21	14	2	0	0	0	0.03519	1	6525	6525		37.812	14.769	1	149620			60795	9428	42702	42763	66055	66055					0.0033971274932582674
PTGPASFDL	9	Unmodified	_PTGPASFDL_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.5135192871094	2	452.724175	903.433798	0.94568	0.00042813	-3.9011	-0.0017661	-2.9554	-0.001338	452.72225909194344	19.73	0.58745	19.53	19.355	19.943	-0.2001					15	11	2	0	0	0	0.024205	1	444	444		35.618	25.353	1	41685	+		60796	24677	42703	42764	66056	66056					-0.021781832648571253
PTGPASFDL	9	Unmodified	_PTGPASFDL_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	452.724175	903.433798	1.3263	0.00060046	-4.2866	-0.0019407	-2.9603	-0.0013402	452.7221240389986	19.227	0.66789	19.227	19.021	19.689	0	-0.15452	-0.000283	NaN	35.618	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28705	+		60797	24677	42703	42764							-0.021781832648571253
PTGPASFDL	9	Unmodified	_PTGPASFDL_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.724175	903.433798	0.077654	3.5156E-05	-3.1515	-0.0014268	-3.0738	-0.0013916	452.7226222509788	19.434	0.2954	19.315	19.151	19.446	-0.11872	-0.066681	0.00074479	NaN	35.618	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23582	+		60798	24677	42703	42764							-0.021781832648571253
PTGPASFDL	9	Unmodified	_PTGPASFDL_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	452.724175	903.433798	0.37706	0.0001707	-4.1899	-0.0018969	-3.8129	-0.0017262	452.72255972819823	19.616	0.72921	19.455	19.233	19.962	-0.16079	0.073316	-0.00019546	NaN	35.618	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51872	+		60799	24677	42703	42764							-0.021781832648571253
PTGPLEWA	8	Unmodified	_PTGPLEWA_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.21160888671875	2	435.721436	869.428318	0.19666	8.5691E-05	2.4898	0.0010849	2.6864	0.0011705	435.72384717460795	42.765	0.14391	42.626	42.558	42.702	-0.13929					5	3	2	0	0	0	0.027866	1	3940	3940		28.254	8.8943	1	54274	+		60800	22175	42704	42765	66057	66057					-0.011618620566764548
PTGWSRKP	8	Unmodified	_PTGWSRKP_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.23773193359375	2	464.753601	927.49265	-0.49265	-0.00022896	0.94357	0.00043853	0.45093	0.00020957	464.7553797490922	30.104	0.61607	30.112	29.839	30.455	0.0086708					24	14	2	0	0	0	0.027866	1	1897	1897		25.45	4.5032	1	219370	+		60801	27289	42705	42766	66058	66058					0.026003378201380656
PTGYPGDI	8	Unmodified	_PTGYPGDI_					0	0	0			REV__nc|ENSG00000290203|Q96PH1-5|NOX5	REV__nc|ENSG00000290203|Q96PH1-5|NOX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.58258056640625	2	410.197793	818.381034	0.36996	0.00015175	-3.8541	-0.0015809	-3.4841	-0.0014292	410.1960778146127	35.023	0.47258	35.067	34.832	35.305	0.04406					20	12	2	0	0	0	0.027866	1	2612	2612		26.796	3.7536	1	247280	+		60802	29066	42706	42767	66059	66059					-0.03542141327659465
PTHFAQSSH	9	Unmodified	_PTHFAQSSH_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.30078125	2	506.235773	1010.45699	-0.83311	-0.00042175	3.657	0.0018513	2.8239	0.0014296	506.2376924923103	25.082	0.98262	25.082	24.341	25.324	0					36	22	2	0	0	0	0.024405	1	1133	1133		35.618	0	1	61251	+		60803	25363	42707	42768	66060	66060					-0.04781744427521062
PTHRAPSIP	9	Unmodified	_PTHRAPSIP_					0	0	0			REV__ENST00000371806.3_1_9:137801458-137801623:-|nuORF	REV__ENST00000371806.3_1_9:137801458-137801623:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.278076171875	2	488.272158	974.529764	-0.7175	-0.00035033	0.79517	0.00038826	0.077669	3.7924E-05	488.27201278280535	40.171	0.40273	40.022	39.821	40.224	-0.1497					20	10	3	0	0	0	0.024487	1	3488	3488		31.955	0	1	312960	+		60804	31178	42708	42769	66061	66061					0.04148009365906091
PTHSKPLAP	9	Unmodified	_PTHSKPLAP_					0	0	0		nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-2|FCRL3;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3;ENST00000468507.1_1_1:157648751-157659660:-|nuORF;ENST00000473231.5_1_1:157648502-157666139:-|nuORF	nc|ENSG00000160856|Q96P31-3|FCRL3	nc|ENSG00000160856|Q96P31-3|FCRL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.8153991699219	2	474.269084	946.523616	0.99262	0.00047077	-0.021421	-1.016E-05	0.9712	0.00046061	474.26849435235295	25.191	0.55949	25.019	24.599	25.159	-0.17151					19	12	2	0	0	0	0.024457	1	1093	1093		29.15	0	1	33556			60805	18429	42709	42770	66062	66062					0.04821491134373446
PTHVAARG	8	Unmodified	_PTHVAARG_					0	0	0			REV__ENST00000565010.1_1_16:602435-603513:+|nuORF	REV__ENST00000565010.1_1_16:602435-603513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.7187194824219	2	404.724844	807.435135	0.65104	0.00026349	-0.21614	-8.7477E-05	0.4349	0.00017601	404.7247949178396	73.02	0.77895	73.02	72.698	73.477	0					43	19	3	0	0	0	0.027866	1	8885	8885		42.474	8.9589	1	1603900	+		60806	35264	42710	42771	66063	66063					0.023714956145681754
PTHVAARG	8	Unmodified	_PTHVAARG_					0	0	0			REV__ENST00000565010.1_1_16:602435-603513:+|nuORF	REV__ENST00000565010.1_1_16:602435-603513:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	404.724844	807.435135	0.27341	0.00011066	-0.067209	-2.7201E-05	0.2062	8.3454E-05	404.72459689474323	73.39	0.73971	73.113	72.626	73.365	-0.2769	0.028469	-3.4233E-05	NaN	31.955	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479960	+		60807	35264	42710	42771							0.023714956145681754
PTHYPVSTF	9	Unmodified	_PTHYPVSTF_					0	0	0			REV__ENST00000328086.11_1_16:25268480-25268591:-|nuORF	REV__ENST00000328086.11_1_16:25268480-25268591:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2674560546875	2	524.758549	1047.50255	-1.5577	-0.0008174	1.0707	0.00056187	-0.48694	-0.00025552	525.2607812949994	43.553	0.43272	43.553	43.367	43.8	0					16	11	2	0	0	0	0.023417	1	4065	4065		68.787	5.4806	1	177120	+		60808	30426	42711	42772	66064	66064					-0.019305189651504406
PTIIHFVL	8	Unmodified	_PTIIHFVL_					0	0	0		ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2215576171875	2	470.286746	938.558939	0.39698	0.0001867	2.8213	0.0013268	3.2183	0.0015135	470.28852358784076	67.914	0.64774	67.68	67.471	68.119	-0.23375					22	15	2	0	0	0	0.027866	1	7889	7889		23.037	9.2614	1	160330			60809	3569	42712	42773	66065	66065					0.08720153662181929
PTIILSVSYKG	11	Unmodified	_PTIILSVSYKG_					0	0	0		nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8-9|ANKS1B;nc|ENSG00000185046|Q7Z6G8-7|ANKS1B;nc|ENSG00000185046|Q7Z6G8-8|ANKS1B;nc|ENSG00000185046|Q7Z6G8-10|ANKS1B;nc|ENSG00000185046|Q7Z6G8-2|ANKS1B;nc|ENSG00000185046|Q7Z6G8-5|ANKS1B;nc|ENSG00000185046|Q7Z6G8-4|ANKS1B;nc|ENSG00000185046|Q7Z6G8-3|ANKS1B	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3430786132812	2	589.344989	1176.67542	-1.1197	-0.00065991	-2.1296	-0.001255	-3.2493	-0.001915	589.3435077588188	103.81	0.67852	103.68	103.38	104.06	-0.12927					45	16	4	0	0	0	1.0344	1	12921	12921		29.17	2.4771	1	466270			60810	18588	42713	42774	66066	66066					0.09415427371413898
PTKASLYGAIL	11	Unmodified	_PTKASLYGAIL_					0	0	0		ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.329833984375	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0238	1	11164	11164		31.53	2.3803	1	4116000			60811	1496	42714	42775	66067	66067					0.0881915819995811
PTKAWLSAA	9	Unmodified	_PTKAWLSAA_					0	0	0			REV__ENSG00000181588|ENST00000402693|MEX3D	REV__ENSG00000181588|ENST00000402693|MEX3D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2877197265625	2	472.763635	943.512717	-0.49031	-0.0002318	3.2492	0.0015361	2.7589	0.0013043	472.7650762576225	94.33	0.54214	94.192	94.008	94.55	-0.13779					12	12	2	0	0	0	0.024381	1	11660	11660		37.159	5.2042	1	66129	+		60812	27411	42715	42776	66068	66068					0.03870088760083945
PTKCIIDII	9	Unmodified	_PTKCIIDII_					0	0	0			REV__nc|ENSG00000155307|Q9NSI8-2|SAMSN1	REV__nc|ENSG00000155307|Q9NSI8-2|SAMSN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.22784423828125	2	508.296453	1014.57835	-0.25467	-0.00012945	3.6468	0.0018536	3.3921	0.0017242	508.2981549014141	30.624	0.50737	30.475	30.219	30.727	-0.14952					30	11	3	0	0	0	0.024477	1	1924	1924		27.882	0	1	732430	+		60813	25001	42716	42777	66069	66069					0.07164741890778714
PTKGICPK	8	Unmodified	_PTKGICPK_					0	0	0		ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000127152|Q9C0K0-2|BCL11B;BCL11B|p.V274Wfs*7|1|0.32|ENSG00000127152|chr14:99176016-99176016|C/-|frameshift_variant	ENSG00000127152|ENST00000357195|BCL11B	ENSG00000127152|ENST00000357195|BCL11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5132141113281	2	422.241481	842.468409	-0.18175	-7.6744E-05	2.1484	0.00090713	1.9666	0.00083038	422.2421285140199	32.037	0.20444	32.1	31.921	32.125	0.062885					6	4	2	0	0	0	0.027866	1	2138	2138		12.207	7.8906	1	209960			60814	4230	42717	42778	66070	66070					0.040873613422377275
PTKHLRTPSTK	11	Unmodified	_PTKHLRTPSTK_					0	0	0		nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1;SPECC1|p.V586*|1|0.22|ENSG00000128487|chr17:20205802-20205802|A/-|frameshift_variant;nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3726196289062	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.97516	1	11888	11888		42.338	0.91146	1	9245900			60815	4289	42718	42779	66071	66071					0.1033955510006308
PTKIVREK	8	Unmodified	_PTKIVREK_					0	0	0			REV__nc|ENSG851|Q9QC07|ERVK-18_pol;REV__nc|ENSG821|P63135|ERVK-7_pol;REV__nc|ENSG855|P10266|ERVK-10_pol;REV__nc|ENSG826|Q9BXR3|ERVK-6_gag	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7740783691406	2	485.805834	969.597115	-0.68459	-0.00033258	0.33603	0.00016325	-0.34855	-0.00016933	485.80606039750614	27.519	0.5069	27.351	27.142	27.649	-0.16816					24	11	4	0	0	0	0.027866	1	1499	1499		45.952	0	1	169460	+		60816	37252;37249;37253;37250	42719	42780	66072	66072					0.11110039576851705
PTKKFQLDI	9	Unmodified	_PTKKFQLDI_					0	0	0			REV__nc|ENSG00000089063|Q96A57|TMEM230	REV__nc|ENSG00000089063|Q96A57|TMEM230	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3164672851562	2	545.318774	1088.623	-0.76659	-0.00041804	-3.168	-0.0017276	-3.9346	-0.0021456	545.3168602991549	101.36	0.64894	101.37	101.05	101.69	0.0090256					41	14	4	0	0	0	0.5973	1	12955	12955		52.937	3.4952	1	1388600	+		60817	20839	42720	42781	66073	66073					0.08222889028479585
PTKKFQLDI	9	Unmodified	_PTKKFQLDI_					0	0	0			REV__nc|ENSG00000089063|Q96A57|TMEM230	REV__nc|ENSG00000089063|Q96A57|TMEM230	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167114257812	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.96224	1	10731	10731		28.081	1.3886	1	4936700	+		60818	20839	42720	42781	66074	66074					0.08222889028479585
PTKKFQLDI	9	Unmodified	_PTKKFQLDI_					0	0	0			REV__nc|ENSG00000089063|Q96A57|TMEM230	REV__nc|ENSG00000089063|Q96A57|TMEM230	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	545.318774	1088.623	-0.65894	-0.00035933	-3.4724	-0.0018936	-4.1314	-0.0022529	545.3167551725024	101.4	1.0525	101.4	101.12	102.17	0	-0.0035324	0.00023872	NaN	52.937	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1388500	+		60819	20839	42720	42781							0.08222889028479585
PTKKKAMFLAS	11	Unmodified	_PTKKKAMFLAS_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3562622070312	2	611.354834	1220.69511	-0.81332	-0.00049722	2.9276	0.0017898	2.1143	0.0012926	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.0183	1	12044	12044		32.751	2.4328	1	11166000	+		60820	22830	42721	42782	66075	66075					0.09359480110538243
PTKKKAMFLAS	11	Unmodified	_PTKKKAMFLAS_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.35546875	2	611.354834	1220.69511	-0.45812	-0.00028007	2.6555	0.0016234	2.1974	0.0013434	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.0392	1	11754	11754		28.081	0	1	13365000	+		60821	22830	42721	42782	66076	66076					0.09359480110538243
PTKLFDVLSGT	11	Unmodified	_PTKLFDVLSGT_					0	0	0			REV__nc|ENSG00000182866|P06239-3|LCK	REV__nc|ENSG00000182866|P06239-3|LCK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3432006835938	2	589.326796	1176.63904	-1.7672	-0.0010415	-4.4157	-0.0026023	-6.1829	-0.0036437	589.3252801725064	93.238	0.39306	93.098	92.96	93.353	-0.13995					11	8	2	0	0	0	0.024753	1	11473	11473		25.126	0	1	53691	+		60822	36997	42722	42783	66077	66077					0.0577855047470166
PTKLGGYKKW	10	Unmodified	_PTKLGGYKKW_					0	0	0			REV__nc|ENSG00000149480|O94776-2|MTA2	REV__nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3435668945312	2	589.340041	1176.66553	0.92698	0.00054631	3.2392	0.001909	4.1662	0.0024553	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.1333	1	11299	11299		28.081	0.19925	1	4746700	+		60823	24679	42723	42784	66078	66078					0.0842628415668969
PTKLSQYE	8	Unmodified	_PTKLSQYE_					0	0	0		ENSG00000165805|ENST00000298699|C12orf50	ENSG00000165805|ENST00000298699|C12orf50	ENSG00000165805|ENST00000298699|C12orf50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.3028259277344	2	483.250557	964.486562	0.034149	1.6502E-05	-0.78615	-0.00037991	-0.752	-0.0003634	483.2495038754429	73.438	0.47619	73.248	73.085	73.561	-0.19026					22	11	3	0	0	0	0.027866	1	8609	8609		18.324	8.6188	1	72421			60824	7469	42724	42785	66079	66079					0.002897747979545784
PTKNHLLLL	9	Unmodified	_PTKNHLLLL_					0	0	0			REV__ENSG00000104804|ENST00000221399|TULP2	REV__ENSG00000104804|ENST00000221399|TULP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.8270874023438	2	524.829309	1047.64407	-0.67594	-0.00035475	-3.8331	-0.0020117	-4.509	-0.0023665	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	0.83071	1	12476	12476		37.159	1.5408	1	14120000	+		60825	21464	42725	42786	66080	66080					0.12214899128002799
PTKPTHGEV	9	Unmodified	_PTKPTHGEV_					0	0	0			REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.302734375	2	483.256174	964.497795	0.056899	2.7497E-05	-2.6526	-0.0012819	-2.5957	-0.0012544	483.2559351371021	73.615	1.451	73.338	72.154	73.605	-0.2769					55	34	3	0	0	0	0.024447	1	8622	8622		25.574	3.6142	1	207070	+		60826	33034	42726	42787	66081	66081					0.01412596892100737
PTKPWGPSS	9	Unmodified	_PTKPWGPSS_					0	0	0			REV__ENSG00000049618|ENST00000636930|ARID1B	REV__ENSG00000049618|ENST00000636930|ARID1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7724304199219	2	478.745442	955.476331	-0.39145	-0.0001874	-3.8078	-0.001823	-4.1993	-0.0020104	478.74378788239375	35.625	0.43891	35.669	35.459	35.898	0.04406					23	10	3	0	0	0	0.024263	1	2729	2729		60.972	15.02	1	233110	+		60827	20148	42727	42788	66082	66082					-0.003187881366216061
PTKQLFDSI	9	Unmodified	_PTKQLFDSI_					0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2973022460938	2	524.787307	1047.56006	0.04731	2.4828E-05	2.4719	0.0012972	2.5192	0.001322	525.2906658258931	81.433	0.58298	81.204	80.939	81.522	-0.22891					16	11	2	0	0	0	0.024367	1	9748	9748		36.447	4.4919	1	105950	+		60828	28279	42728	42789	66083	66083					0.038183232404207956
PTKRLWGT	8	Unmodified	_PTKRLWGT_					0	0	0			REV__ENSG00000235098|ENST00000537107|ANKRD65	REV__ENSG00000235098|ENST00000537107|ANKRD65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2842102050781	2	479.777077	957.5396	0.17588	8.4383E-05	-0.28112	-0.00013488	-0.10524	-5.0493E-05	479.77652803261265	79.68	0.46397	79.68	79.447	79.911	0					25	10	3	0	0	0	0.027866	1	9888	9888		17.365	0	1	470370	+		60829	28921	42729	42790	66084	66084					0.05913197371273782
PTKSVLAL	8	Unmodified	_PTKSVLAL_					0	0	0		ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.7615966796875	2	414.763104	827.511654	0.11105	4.606E-05	-3.4788	-0.0014429	-3.3678	-0.0013968	414.7617867578987	110.25	0.53743	110.26	110.09	110.62	0.0059204					31	14	3	0	0	0	0.93274	1	13890	13890		47.916	0	1	346340			60830	12513	42730	42791	66085	66085					0.09099874391165486
PTKSVLAL	8	Unmodified	_PTKSVLAL_					0	0	0		ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	414.763104	827.511654	1.8796	0.00077959	-5.0426	-0.0020915	-3.163	-0.0013119	414.76100000344024	110.14	0.5537	110.14	109.96	110.51	0	-0.17136	-0.0010072	NaN	47.916	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362270			60831	12513	42730	42791							0.09099874391165486
PTKSVLAL	8	Unmodified	_PTKSVLAL_					0	0	0		ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	414.763104	827.511654	0.51349	0.00021298	-4.3533	-0.0018056	-3.8398	-0.0015926	414.761533769115	110.18	0.4341	110.17	110.01	110.45	-0.0094986	-0.13858	-0.00043539	NaN	47.916	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509600			60832	12513	42730	42791							0.09099874391165486
PTKSVLAL	8	Unmodified	_PTKSVLAL_					0	0	0		ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	414.763104	827.511654	-1.3566	-0.00056265	-2.2813	-0.0009462	-3.6379	-0.0015089	414.76240617584693	110.58	0.5344	110.44	110.24	110.78	-0.13983	0.13056	0.0012834	NaN	47.916	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71043			60833	12513	42730	42791							0.09099874391165486
PTKSVLAL	8	Unmodified	_PTKSVLAL_					0	0	0		ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.763104	827.511654	0.81937	0.00033985	-1.6599	-0.00068845	-0.84048	-0.0003486	414.76152845754274	110.57	0.42863	110.43	110.21	110.64	-0.1469	0.11371	0.0017989	NaN	47.916	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30065			60834	12513	42730	42791							0.09099874391165486
PTKVDTSKV	9	Unmodified	_PTKVDTSKV_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.26690673828125	2	487.779482	973.544411	-0.25231	-0.00012307	-0.30751	-0.00015	-0.55982	-0.00027307	487.7792726991187	47.317	0.81179	47.317	46.967	47.779	0					51	23	4	0	0	0	0.024438	1	4763	4763		44.377	32.866	1	2002600	+		60835	29221	42731	42792	66086	66086					0.056580367233777906
PTLEAGTNVD	10	Unmodified	_PTLEAGTNVD_					0	0	0			REV__nc|ENSG00000118705|P04844-2|RPN2	REV__nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.8136291503906	2	508.748379	1015.4822	-0.50533	-0.00025709	-1.6724	-0.00085082	-2.1777	-0.0011079	508.74736913604517	93.118	0.42117	93.114	92.905	93.326	-0.0042038					14	9	2	0	0	0	0.03519	1	11764	11764		19.104	3.4617	1	54168	+		60836	22420	42732	42793	66087	66087					-0.024917344156278887
PTLERTLRVLQ	11	Unmodified	_PTLERTLRVLQ_					0	0	0		nc|ENSG00000122787|P51857-3|AKR1D1;nc|ENSG00000122787|P51857-2|AKR1D1;ENSG00000122787|ENST00000242375|AKR1D1	nc|ENSG00000122787|P51857-3|AKR1D1	nc|ENSG00000122787|P51857-3|AKR1D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.6009521484375	3	442.601504	1324.78268	0.36102	0.00015979	-1.2143	-0.00053747	-0.85332	-0.00037768	442.60085921913367	102.42	0.6427	102.41	102.15	102.79	-0.0054474					25	14	2	0	0	0	1.0699	1	13040	13040		19.627	2.1589	1	570440			60837	3945	42733	42794	66088	66088					0.1332839730566775
PTLFKIAEE	9	Unmodified	_PTLFKIAEE_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.269287109375	2	524.289682	1046.56481	-0.48799	-0.00025585	-3.1344	-0.0016433	-3.6224	-0.0018992	524.2882998623338	34.984	0.32416	35.029	34.869	35.193	0.044853					17	8	3	0	0	0	0.024405	1	2602	2602		44.117	23.635	1	159410	+		60838	25703	42734	42795	66089	66089					0.04339207383191024
PTLHILPPA	9	Unmodified	_PTLHILPPA_					0	0	0			REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|69|3|anti-sense	REV__SVA_C_dup340|chr14:23231648-23233421:+|1.184232882990585|0.1126271286430709|3.39|503.0|69|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.77734375	2	479.789653	957.564752	0.078862	3.7837E-05	-4.2238	-0.0020265	-4.145	-0.0019887	479.7873465127789	27.95	0.50941	27.705	27.332	27.842	-0.24524					15	11	2	0	0	0	0.024386	1	1565	1565		25.45	0	1	85257	+		60839	37606	42735	42796	66090	66090					0.08427252173839861
PTLHLDNQY	9	Unmodified	_PTLHLDNQY_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2582397460938	2	550.772188	1099.52982	-0.21403	-0.00011788	-0.16681	-9.1873E-05	-0.38084	-0.00020975	551.2738511778999	63.303	0.74934	63.119	62.788	63.537	-0.18386					40	18	3	0	0	0	0.024405	1	7214	7214		44.117	14.967	1	316020	+		60840	27638	42736	42797	66091	66091					-0.015960354247681607
PTLHLDNQY	9	Unmodified	_PTLHLDNQY_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.772188	1099.52982	-0.10597	-5.8366E-05	-0.089299	-4.9183E-05	-0.19527	-0.00010755	551.2738895074087	63.406	0.66487	63.178	62.81	63.475	-0.22773	-0.0066621	2.6476E-06	NaN	44.117	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411600	+		60841	27638	42736	42797							-0.015960354247681607
PTLHLDNQY	9	Unmodified	_PTLHLDNQY_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.772188	1099.52982	0.22724	0.00012516	0.61613	0.00033935	0.84338	0.00046451	551.2747558938805	63.515	0.7193	63.257	62.706	63.425	-0.25824	0.072098	0.00077971	NaN	44.117	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351030	+		60842	27638	42736	42797							-0.015960354247681607
PTLHPTLLH	9	Unmodified	_PTLHPTLLH_					0	0	0			REV__ENST00000501830.2_1_15:30917398-30917659:-|nuORF	REV__ENST00000501830.2_1_15:30917398-30917659:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3125	2	514.798009	1027.58147	0.12976	6.6801E-05	-0.80528	-0.00041455	-0.67551	-0.00034775	514.7973961699284	88.64	0.54649	88.503	88.315	88.862	-0.13744					20	12	2	0	0	0	0.024487	1	10778	10778		24.203	3.2558	1	193040	+		60843	33914	42737	42798	66092	66092					0.06877753059802671
PTLIQQII	8	Unmodified	_PTLIQQII_					0	0	0			REV__TBC1D12-HELLS|1|fusion	REV__TBC1D12-HELLS|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2791442871094	2	463.289485	924.564418	1.0397	0.00048169	-1.0499	-0.0004864	-0.010165	-4.7094E-06	463.2887716890195	51.519	0.57029	51.335	51.099	51.669	-0.18404					21	14	2	0	0	0	0.027866	1	5325	5325		7.1934	0	1	261110	+		60844	37677	42738	42799	66093	66093					0.09911832453997249
PTLKQRVP	8	Unmodified	_PTLKQRVP_					0	0	0			REV__ENST00000454741.5_1_22:28396099-28396309:+|nuORF	REV__ENST00000454741.5_1_22:28396099-28396309:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7821044921875	2	469.792727	937.5709	-0.17217	-8.0886E-05	0.36647	0.00017217	0.1943	9.128E-05	469.79264183869054	29.531	0.88931	29.609	29.202	30.091	0.078346					37	21	3	0	0	0	0.027866	1	1722	1722		27.882	0	1	211120	+		60845	32767	42739	42800	66094	66094					0.09961770405368497
PTLKVGHSQ	9	Unmodified	_PTLKVGHSQ_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7900695800781	2	483.771991	965.529429	-0.54258	-0.00026248	1.0152	0.00049113	0.47263	0.00022865	483.7719862336921	32.609	1.0481	32.609	32.34	33.388	0					38	27	2	0	0	0	0.024405	1	2364	2364		35.618	0	1	833010	+		60846	23649	42740	42801	66095	66095					0.04528589646054115
PTLLEVLLN	9	Unmodified	_PTLLEVLLN_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.31048583984375	2	506.307875	1010.6012	0.6115	0.00030961	-0.40989	-0.00020753	0.20161	0.00010208	506.30754760851704	84.013	1.1867	83.802	83.264	84.451	-0.21159					68	27	4	0	0	0	0.94809	1	10169	10169		29.15	2.3535	1	1253800			60847	10202	42741	42802	66096	66096					0.09632084279905939
PTLLPIKGLLL	11	Unmodified	_PTLLPIKGLLL_					0	0	0			REV__ENST00000157600.7_2_3:8579052-8590296:+|nuORF	REV__ENST00000157600.7_2_3:8579052-8590296:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.3433227539062	2	589.399567	1176.78458	-1.7399	-0.0010255	3.9093	0.0023041	2.1693	0.0012786	589.4015728921457	92.516	0.16823	92.516	92.454	92.622	0					6	3	2	0	0	0	0.024844	1	11744	11744		12.812	0	1	28322	+		60848	29271	42742	42803	66097	66097					0.2032605806157335
PTLLPPETGG	10	Unmodified	_PTLLPPETGG_					0	0	0		nc|ENSG00000064787|O75363|BCAS1;nc|ENSG00000064787|O75363-2|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363|BCAS1	nc|ENSG00000064787|O75363|BCAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2713317871094	2	491.266207	980.517862	-0.17879	-8.7832E-05	-2.0969	-0.0010301	-2.2756	-0.0011179	491.26477989524136	33.851	0.62182	33.847	33.676	34.298	-0.0045624					34	15	3	0	0	0	0.03519	1	2452	2452		32.812	15.447	1	403960			60849	1283	42743	42804	66098	66098					0.026823478320466165
PTLPRAPQS	9	Unmodified	_PTLPRAPQS_					0	0	0		ENST00000572652.5_1_17:78194749-78195028:+|nuORF;ENST00000574967.5_2_17:78194749-78195313:+|nuORF;ENST00000361193.7_2_17:78194749-78195568:+|nuORF	ENST00000572652.5_1_17:78194749-78195028:+|nuORF	ENST00000572652.5_1_17:78194749-78195028:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7899475097656	2	483.771991	965.529429	-0.40352	-0.00019521	0.75635	0.0003659	0.35283	0.00017069	483.7719322474416	32.354	1.1374	32.416	32.045	33.182	0.062885					42	29	2	0	0	0	0.024506	1	2294	2294		23.042	10.836	1	549090			60850	17062	42744	42805	66099	66099					0.045285896460427466
PTLPRAQAALR	11	Unmodified	_PTLPRAQAALR_					0	0	0			REV__ENST00000554271.5_1_14:59951307-59951502:+|nuORF	REV__ENST00000554271.5_1_14:59951307-59951502:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.3674926757812	2	597.359296	1192.70404	0.52306	0.00031246	-1.2859	-0.00076816	-0.76286	-0.0004557	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	1.0238	1	12341	12341		31.53	2.3598	1	2779900	+		60851	34986	42745	42806	66100	66100					0.115395897911867
PTLRPDWL	8	Unmodified	_PTLRPDWL_					0	0	0			REV__ENST00000599957.5_1_19:51020593-51020650:-|nuORF	REV__ENST00000599957.5_1_19:51020593-51020650:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8002624511719	2	499.276909	996.539266	-0.54738	-0.00027329	-1.1976	-0.00059793	-1.745	-0.00087122	499.27499466250424	28.376	0.50661	28.372	28.117	28.624	-0.0042019					40	11	5	0	0	0	0.027866	1	1670	1670		31.955	0	1	132440	+		60852	35834	42746	42807	66101	66101					0.04085777651414446
PTLRPTSSI	9	Unmodified	_PTLRPTSSI_					0	0	0		ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	ENSG00000143970|ENST00000435504|ASXL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2789001464844	2	486.279649	970.544745	-0.28902	-0.00014054	-0.28911	-0.00014059	-0.57813	-0.00028113	486.27951697616965	51.004	1.5073	50.854	50.1	51.608	-0.14916					138	43	6	0	0	0	0.29158	1	5378	5378		76.774	7.1465	1	26374000			60853	5705	42747	42808	66102	66102					0.05829456443234449
PTLTGDAQY	9	Unmodified	_PTLTGDAQY_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.234375	2	483.232364	964.450176	0.095927	4.6355E-05	-1.0489	-0.00050685	-0.95296	-0.0004605	483.2314046590255	41.57	0.37474	41.435	41.255	41.629	-0.13553					24	9	3	0	0	0	0.20967	1	3678	3678		87.754	13.78	1	1669800	+		60854	23131	42748	42809	66103	66103					-0.03347102098769028
PTLTGDAQY	9	Unmodified	_PTLTGDAQY_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.23394775390625	2	483.232364	964.450176	-0.40867	-0.00019748	-0.47718	-0.00023059	-0.88585	-0.00042807	483.23175723555084	41.782	0.48586	41.552	41.352	41.838	-0.23026					27	12	4	0	0	0	0.20967	1	3702	3702		87.754	2.8388	1	1574900	+		60855	23131	42748	42809	66104	66104					-0.03347102098769028
PTLTGDAQY	9	Unmodified	_PTLTGDAQY_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-4|PNPLA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.23492431640625	2	483.232364	964.450176	0.052915	2.557E-05	-1.4582	-0.00070466	-1.4053	-0.00067909	483.23129174962736	41.764	0.29703	41.534	41.354	41.651	-0.23029					22	7	4	0	0	0	0.022083	1	3684	3684		99.375	56.979	1	1725300	+		60856	23131	42748	42809	66105	66105					-0.03347102098769028
PTMLWLIL	8	Unmodified	_PTMLWLIL_					0	0	0			REV__ENSG00000125975|ENST00000444723|C20orf173	REV__ENSG00000125975|ENST00000444723|C20orf173	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7763366699219	2	493.790807	985.56706	0.043931	2.1693E-05	-3.0779	-0.0015198	-3.0339	-0.0014981	493.7888623737378	52.372	0.3946	52.372	52.16	52.554	0					18	9	3	0	0	0	0.027866	1	5620	5620		23.037	2.5549	1	287790	+		60857	22868	42749	42810	66106	66106					0.07369964587314826
PTNFYLAADN	10	Unmodified	_PTNFYLAADN_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	LRP1B|p.L3680Ffs*76|1|0.29|ENSG00000168702|chr2:140364754-140364754|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3189086914062	2	563.264196	1124.51384	-0.19089	-0.00010752	4.1109	0.0023155	3.92	0.002208	563.267712944622	98.952	0.30635	98.783	98.633	98.94	-0.16862					8	6	2	0	0	0	0.03519	1	12250	12250		26.063	0	1	20686			60858	7855;17923	42750	42811	66107	66107					-0.04343741661659806
PTNKQTTFL	9	Unmodified	_PTNKQTTFL_					0	0	0			REV__ENST00000589088.1_1_18:44266135-44268875:-|nuORF	REV__ENST00000589088.1_1_18:44266135-44268875:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2855224609375	2	525.284931	1048.55531	0.078307	4.1134E-05	-0.34328	-0.00018032	-0.26497	-0.00013918	525.2846036957188	53.079	0.87865	52.889	52.551	53.429	-0.18981					54	22	4	0	0	0	0.5973	1	5539	5539		52.937	1.6012	1	2390000	+		60859	21248	42751	42812	66108	66108					0.032974390976505674
PTNKYIIKV	9	Unmodified	_PTNKYIIKV_					0	0	0			REV__ENSG00000147592|ENST00000276590|LACTB2	REV__ENSG00000147592|ENST00000276590|LACTB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3255615234375	2	538.329142	1074.64373	0.47679	0.00025667	-4.3339	-0.002333	-3.8571	-0.0020764	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	0.91321	1	12494	12494		31.53	1.2121	1	21461000	+		60860	24568	42752	42813	66109	66109					0.10939479408125408
PTNSCMKTIG	10	Carbamidomethyl (C),Oxidation (M)	_PTNSC(Carbamidomethyl (C))M(Oxidation (M))KTIG_	PTNSC(1)MKTIG	PTNSCM(1)KTIG	PTNSC(99)MKTIG	PTNSCM(99)KTIG	0	1	1		ENSG00000184349|ENST00000333274|EFNA5;ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENSG00000184349|ENST00000333274|EFNA5	ENSG00000184349|ENST00000333274|EFNA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.7571411132812	2	562.757366	1123.50018	-0.76902	-0.00043277	0.37619	0.0002117	-0.39283	-0.00022107	562.7574426182924	32.425	1.1385	32.425	32.149	33.287	0					61	29	4	0	0	0	0.40067	1	2240	2240		98.629	16.389	1	3011800			60861	9329	42753	42814	66110	66110	118	389			-0.05663058756749706
PTNSCMKTIG	10	Carbamidomethyl (C),Oxidation (M)	_PTNSC(Carbamidomethyl (C))M(Oxidation (M))KTIG_	PTNSC(1)MKTIG	PTNSCM(1)KTIG	PTNSC(77)MKTIG	PTNSCM(77)KTIG	0	1	1		ENSG00000184349|ENST00000333274|EFNA5;ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENSG00000184349|ENST00000333274|EFNA5	ENSG00000184349|ENST00000333274|EFNA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.7568969726562	2	562.757366	1123.50018	-0.74112	-0.00041707	0.42244	0.00023773	-0.31869	-0.00017934	562.7574522471817	32.307	1.0964	32.319	32.063	33.16	0.011799					60	28	4	0	0	0	0.59716	1	2207	2207		77.318	10.888	1	3256100			60862	9329	42753	42814	66111	66111	118	389			-0.05663058756749706
PTNSCMKTIG	10	Carbamidomethyl (C),Oxidation (M)	_PTNSC(Carbamidomethyl (C))M(Oxidation (M))KTIG_					0	1	1		ENSG00000184349|ENST00000333274|EFNA5;ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENSG00000184349|ENST00000333274|EFNA5	ENSG00000184349|ENST00000333274|EFNA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.757366	1123.50018	-0.12049	-6.7805E-05	0.66348	0.00037338	0.54299	0.00030557	562.7573411894425	32.515	0.37508	32.278	32.042	32.417	-0.23666	-0.032265	0.00025524	NaN	98.629	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185650			60863	9329	42753	42814			118	389			-0.05663058756749706
PTNSCMKTIG	10	Carbamidomethyl (C),Oxidation (M)	_PTNSC(Carbamidomethyl (C))M(Oxidation (M))KTIG_					0	1	1		ENSG00000184349|ENST00000333274|EFNA5;ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENSG00000184349|ENST00000333274|EFNA5	ENSG00000184349|ENST00000333274|EFNA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	562.757366	1123.50018	0.45412	0.00025556	0.19199	0.00010805	0.64611	0.0003636	562.7568764888281	32.548	0.5937	32.356	31.942	32.536	-0.19261	0.045231	-0.00027543	NaN	98.629	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201300			60864	9329	42753	42814			118	389			-0.05663058756749706
PTNSCMKTIG	10	Carbamidomethyl (C),Oxidation (M)	_PTNSC(Carbamidomethyl (C))M(Oxidation (M))KTIG_					0	1	1		ENSG00000184349|ENST00000333274|EFNA5;ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENSG00000184349|ENST00000333274|EFNA5	ENSG00000184349|ENST00000333274|EFNA5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	562.757366	1123.50018	-0.43301	-0.00024368	1.2243	0.00068899	0.7913	0.00044531	562.7576933557751	32.46	0.32249	32.303	32.121	32.444	-0.15772	-0.0077664	0.00088646	NaN	98.629	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221460			60865	9329	42753	42814			118	389			-0.05663058756749706
PTNSCMKTIG	10	Oxidation (M)	_PTNSCM(Oxidation (M))KTIG_		PTNSCM(1)KTIG		PTNSCM(77)KTIG	0	0	1		ENSG00000184349|ENST00000333274|EFNA5;ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENSG00000184349|ENST00000333274|EFNA5	ENSG00000184349|ENST00000333274|EFNA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2466430664062	2	534.246634	1066.47872	-1.2863	-0.00068718	1.2908	0.00068959	0.0045079	2.4084E-06	534.2472394993654	34.41	1.4497	34.46	34.173	35.623	0.050255					94	37	5	0	0	0	0.59716	1	2519	2519		77.318	8.5308	1	6557600			60866	9329	42753	42815	66112	66112		389			-0.05186443785487427
PTPDHESAF	9	Unmodified	_PTPDHESAF_					0	0	0		ENST00000321248.4_1_10:134261270-134261444:+|nuORF	ENST00000321248.4_1_10:134261270-134261444:+|nuORF	ENST00000321248.4_1_10:134261270-134261444:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7380065917969	2	500.722164	999.429775	-1.576	-0.00078914	1.6295	0.00081593	0.053497	2.6787E-05	500.7231001163232	33.93	0.50439	33.755	33.507	34.011	-0.17557					22	12	3	0	0	0	0.024436	1	2416	2416		30.504	0	1	205950			60867	12202	42754	42816	66113	66113					-0.06996272758567557
PTPIINWR	8	Unmodified	_PTPIINWR_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.73822021484375	2	498.784902	995.55525	-0.3308	-0.000165	4.326	0.0021578	3.9952	0.0019928	498.7867581053582	33.916	0.57022	33.713	33.438	34.009	-0.20346					38	14	4	0	0	0	0.027866	1	2453	2453		33.516	3.0119	1	476260			60868	5591	42755	42817	66114	66114					0.05729483888319464
PTPLLRWCD	9	Unmodified	_PTPLLRWCD_					0	0	0			REV__nc|ENSG00000211460|Q15631-2|TSN	REV__nc|ENSG00000211460|Q15631-2|TSN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2620239257812	2	550.781502	1099.54845	-0.75988	-0.00041853	-2.142	-0.0011798	-2.9019	-0.0015983	551.2818276230233	91.437	0.54798	91.425	91.156	91.704	-0.012383					27	12	3	0	0	0	0.023837	1	11555	11555		64.207	5.9773	1	110390	+		60869	37093	42756	42818	66115	66115					0.0026580294545510696
PTPQQQPPLN	10	Unmodified	_PTPQQQPPLN_					0	0	0		nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2	nc|ENSG00000179912|Q9Y2K5|R3HDM2	nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.8147583007812	2	560.293288	1118.57202	0.1259	7.0539E-05	2.0957	0.0011742	2.2216	0.0012448	560.2933105375045	81.277	0.37251	81.048	80.857	81.229	-0.2289					15	8	3	0	0	0	0.03519	1	9759	9759		62.107	6.6032	1	123800			60870	8935	42757	42819	66116	66116					0.017479399836247467
PTPSRPGWR	9	Unmodified	_PTPSRPGWR_					0	0	0			REV__ENST00000530047.5_1_8:145584671-145584875:+|nuORF	REV__ENST00000530047.5_1_8:145584671-145584875:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.296875	2	527.283057	1052.55156	-0.1068	-5.6313E-05	-2.3997	-0.0012653	-2.5065	-0.0013216	527.2819875802966	58.55	0.19809	58.369	58.228	58.426	-0.18133					7	4	2	0	0	0	0.024495	1	6428	6428		14.137	0	1	169010	+		60871	34527	42758	42820	66117	66117					0.027388141144683686
PTPTLWQGDN	10	Unmodified	_PTPTLWQGDN_					0	0	0			REV__ENST00000448507.5_1_4:7032324-7032429:+|nuORF	REV__ENST00000448507.5_1_4:7032324-7032429:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.7222290039062	2	564.769645	1127.52474	0.058796	3.3206E-05	-4.4849	-0.0025329	-4.4261	-0.0024997	564.7668905788572	49.807	0.18725	49.527	49.397	49.584	-0.27977					5	4	2	0	0	0	0.03519	1	5007	5007		24.519	3.5723	1	79097	+		60872	32657	42759	42821	66118	66118					-0.03392339287370305
PTQDWQIS	8	Unmodified	_PTQDWQIS_					0	0	0		HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|1|1|sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|1|1|sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|1|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2683410644531	2	487.732532	973.45051	0.16342	7.9703E-05	-0.33648	-0.00016411	-0.17306	-8.4408E-05	487.732284507515	47.472	1.0827	47.319	46.776	47.858	-0.15301					68	30	3	0	0	0	0.027866	1	4774	4774		37.159	1.5408	1	2011700			60873	17716	42760	42822	66119	66119					-0.03727682378894315
PTQERAATYI	10	Unmodified	_PTQERAATYI_					0	0	0			REV__ENSG00000183035|ENST00000329312|CYLC1	REV__ENSG00000183035|ENST00000329312|CYLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.297607421875	2	575.29857	1148.58259	-1.9701	-0.0011334	0.25077	0.00014427	-1.7193	-0.0009891	575.2985406757246	43.929	0.75883	43.929	43.658	44.417	0					54	21	4	0	0	0	1.0616	1	4149	4149		37.812	1.3648	1	3506200	+		60874	27528	42761	42823	66120	66120					0.014239226380595937
PTQKLSGAAI	10	Unmodified	_PTQKLSGAAI_					0	0	0		ENST00000585403.5_1_17:40721871-40723618:+|nuORF	ENST00000585403.5_1_17:40721871-40723618:+|nuORF	ENST00000585403.5_1_17:40721871-40723618:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.28765869140625	2	493.287474	984.560395	-1.2111	-0.00059741	0.68133	0.00033609	-0.52976	-0.00026132	493.28778333225864	22.075	1.2443	22.149	21.687	22.931	0.073956					63	25	4	0	0	0	0.69662	2	685	685;718		67.494	10.773	1	3641700			60875	17226	42762	42824	66121;66122	66121					0.06749742960278127
PTQKLSGAAI	10	Unmodified	_PTQKLSGAAI_					0	0	0		ENST00000585403.5_1_17:40721871-40723618:+|nuORF	ENST00000585403.5_1_17:40721871-40723618:+|nuORF	ENST00000585403.5_1_17:40721871-40723618:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.28741455078125	2	493.287474	984.560395	-0.021172	-1.0444E-05	-1.0081	-0.00049726	-1.0292	-0.0005077	493.287070092578	22.357	1.5154	22.168	21.816	23.331	-0.18894					90	32	5	0	0	0	0.54901	1	808	808		82.75	10.873	1	17015000			60876	17226	42762	42824	66123	66123					0.06749742960278127
PTQKLSGAAI	10	Unmodified	_PTQKLSGAAI_					0	0	0		ENST00000585403.5_1_17:40721871-40723618:+|nuORF	ENST00000585403.5_1_17:40721871-40723618:+|nuORF	ENST00000585403.5_1_17:40721871-40723618:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.28717041015625	2	493.287474	984.560395	0.38789	0.00019134	-1.4931	-0.00073654	-1.1052	-0.0005452	493.2868186624525	22.464	1.2377	22.262	21.999	23.237	-0.20199					83	26	5	0	0	0	0.86389	1	777	777		56.434	6.8977	1	15279000			60877	17226	42762	42824	66124	66124					0.06749742960278127
PTQLRFLL	8	Unmodified	_PTQLRFLL_					0	0	0		ENST00000311604.7_1_11:1913083-1913311:+|nuORF	ENST00000311604.7_1_11:1913083-1913311:+|nuORF	ENST00000311604.7_1_11:1913083-1913311:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.3011779785156	2	494.302927	986.591301	-0.25601	-0.00012655	-4.2602	-0.0021058	-4.5162	-0.0022324	494.30075389334326	96.309	2.5046	96.153	95.62	98.125	-0.15646					207	58	7	0	0	0	1.0338	1	11934	11934		31.955	1.6371	1	35328000			60878	12082	42763	42825	66125	66125					0.09746941065179726
PTQNLDLDNET	11	Unmodified	_PTQNLDLDNET_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;ENST00000578955.1_1_18:19031081-19057168:+|nuORF;nc|ENSG00000141449|Q9C091-4|GREB1L;ENST00000578368.5_1_18:18963479-19048745:+|nuORF;ENST00000584446.5_1_18:18963479-19034595:+|nuORF	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.5302734375	3	420.529851	1258.56773	5.0846	0.0021382	-4.0797	-0.0017156	1.0049	0.00042258	420.5280338854828	17.353	0.34763	17.102	16.974	17.322	-0.25049					18	6	4	0	0	0	1.0592	1	154	154		22.562	1.7244	1	317910			60879	5492	42764	42826	66126	66126					-0.05121614020617926
PTQPIHTTVK	10	Unmodified	_PTQPIHTTVK_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2703247070312	2	561.319306	1120.62406	-0.77983	-0.00043774	0.59731	0.00033528	-0.18252	-0.00010245	561.3203197846286	26.234	0.46218	25.998	25.916	26.378	-0.23603					32	13	3	0	0	0	0.03519	1	1396	1396		36.447	12.924	1	767860	+		60880	25909	42765	42827	66127	66127					0.06857103397373976
PTQPPQAMS	9	Unmodified	_PTQPPQAMS_					0	0	0			REV__ENST00000554756.1_1_14:24805383-24807435:-|nuORF	REV__ENST00000554756.1_1_14:24805383-24807435:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7724609375	2	478.728935	955.443317	-0.38585	-0.00018472	0.84279	0.00040347	0.45694	0.00021875	478.7292250553998	35.639	1.1198	35.683	35.085	36.205	0.044056					51	29	2	0	0	0	0.024263	1	2766	2766		42.396	0	1	139410	+		60881	23048	42766	42828	66128	66128					-0.03618738250975184
PTQPQTPGRR	10	Unmodified	_PTQPQTPGRR_					0	0	0		ENST00000502488.1_1_4:106447966-106448143:-|nuORF	ENST00000502488.1_1_4:106447966-106448143:-|nuORF	ENST00000502488.1_1_4:106447966-106448143:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.31103515625	2	569.309803	1136.60505	-1.0374	-0.00059058	1.728	0.00098376	0.69061	0.00039317	569.3107065020649	38.943	1.2159	38.778	38.476	39.692	-0.16458					88	32	4	0	0	0	0.94316	1	3269	3269		51.193	3.5354	1	9764300			60882	15670	42767	42829	66129	66129					0.04221566826322487
PTQRGRHT	8	Unmodified	_PTQRGRHT_					0	0	0		ENST00000334348.7_2_7:76142451-76144565:+|nuORF;nc|ENSG00000243566|Q9BT76-2|UPK3B;nc|ENSG00000243566|Q9BT76|UPK3B	ENST00000334348.7_2_7:76142451-76144565:+|nuORF	ENST00000334348.7_2_7:76142451-76144565:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.75848388671875	2	476.757207	951.499861	1.0096	0.00048135	0.60726	0.00028952	1.6169	0.00077087	476.7575819480511	99.997	1.3288	99.997	99.871	101.2	0					54	32	2	0	0	0	1.043	1	12863	12863		30.504	5.0535	1	287010			60883	12383	42768	42830	66130	66130					0.022170704205564107
PTQRGRHT	8	Unmodified	_PTQRGRHT_					0	0	0		ENST00000334348.7_2_7:76142451-76144565:+|nuORF;nc|ENSG00000243566|Q9BT76-2|UPK3B;nc|ENSG00000243566|Q9BT76|UPK3B	ENST00000334348.7_2_7:76142451-76144565:+|nuORF	ENST00000334348.7_2_7:76142451-76144565:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	476.757207	951.499861	0.30524	0.00014553	1.2516	0.0005967	1.5568	0.00074223	476.75785307514684	100.14	1.3858	100.15	99.784	101.17	0.010117	0.076088	0.00031221	NaN	30.504	55	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272260			60884	12383	42768	42830							0.022170704205564107
PTQRPDRVP	9	Unmodified	_PTQRPDRVP_					0	0	0			REV__ENST00000586495.1_1_17:73872946-73873276:-|nuORF	REV__ENST00000586495.1_1_17:73872946-73873276:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2907104492188	2	533.293622	1064.57269	-0.26426	-0.00014093	-2.7684	-0.0014764	-3.0327	-0.0016173	533.2919979864602	107.25	0.4583	107.24	106.98	107.44	-0.003479					26	14	2	0	0	0	0.024477	1	13743	13743		20.947	0	1	82551	+		60885	35602	42769	42831	66131	66131					0.042987794233113164
PTQRVPISRHT	11	Unmodified	_PTQRVPISRHT_					0	0	0		nc|ENSG00000136826|O43474-5|KLF4	nc|ENSG00000136826|O43474-5|KLF4	nc|ENSG00000136826|O43474-5|KLF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	646.3653564453125	2	646.36511	1290.71567	0.10778	6.9666E-05	0.70606	0.00045637	0.81384	0.00052603	646.3656023172358	46.555	0.70706	46.294	45.93	46.637	-0.26118					53	18	4	0	0	0	1.0281	1	4482	4482		30.569	0.25114	1	8429100			60886	18307	42770	42832	66132	66132					0.08193786814535997
PTQSRSRRVRR	11	Unmodified	_PTQSRSRRVRR_					0	0	0			REV__ENST00000450704.1_1_9:46843972-46844976:+|nuORF	REV__ENST00000450704.1_1_9:46843972-46844976:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	466.941162109375	3	466.943147	1397.80761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.62	1	100.63	100.13	101.13	0.010117								0	0	0	1.3937	1	12838	12838		21.032	4.5024	1		+		60887	32708	42771	42833	66133	66133					0.12461889951578087
PTRANVPVL	9	Unmodified	_PTRANVPVL_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4;ENST00000467079.1_1_7:87035597-87037514:-|nuORF	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7910461425781	2	483.790184	965.565815	-0.44872	-0.00021709	-0.16439	-7.953E-05	-0.61311	-0.00029662	483.7900962984872	45.834	1.9065	45.878	45.11	47.016	0.043877					125	54	4	0	0	0	0.26966	1	4466	4466		79.713	10.085	1	24231000			60888	770	42772	42834	66134	66134					0.08165466542754984
PTRAPLGTPPE	11	Unmodified	_PTRAPLGTPPE_					0	0	0			REV__ENSG00000149679|ENST00000279101|CABLES2	REV__ENSG00000149679|ENST00000279101|CABLES2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3301391601562	2	568.308938	1134.60332	0.009116	5.1807E-06	3.8395	0.002182	3.8486	0.0021872	568.3109143044693	92.622	1.3425	92.5	91.717	93.059	-0.12242					71	31	5	0	0	0	0.024787	1	11406	11406		49.536	25.017	1	853840	+		60889	24697	42773	42835	66135	66135					0.04140513017705416
PTREWTAWMM	10	Unmodified	_PTREWTAWMM_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.88140869140625	3	436.866976	1307.5791	0.4659	0.00020354	1.7904	0.00078218	2.2563	0.00098572	436.8679539832601	39.422	0.51667	39.422	39.254	39.771	0					32	14	4	0	0	0	0.03519	1	3385	3385		74.165	3.7534	1	513810			60890	7601	42774	42836	66136	66136					-0.062387867318648205
PTREWTAWMM	10	Unmodified	_PTREWTAWMM_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;SLFN5|p.Y803Ifs*2|1|0.2|ENSG00000166750|chr17:35265613-35265614|-/A|frameshift_variant;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.8815002441406	3	436.866976	1307.5791	-0.72336	-0.00031601	2.3787	0.0010392	1.6553	0.00072316	436.86823954514125	39.478	0.2813	39.379	39.199	39.48	-0.098755					12	7	2	0	0	0	0.03519	1	3391	3391		65.157	21.739	1	234310			60891	7601	42774	42836	66137	66137					-0.062387867318648205
PTRGESGIL	9	Unmodified	_PTRGESGIL_					0	0	0		ENST00000609924.1_1_18:3246797-3247004:-|nuORF	ENST00000609924.1_1_18:3246797-3247004:-|nuORF	ENST00000609924.1_1_18:3246797-3247004:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2571105957031	2	465.256174	928.497795	1.0038	0.00046704	-1.0929	-0.00050849	-0.089099	-4.1454E-05	465.25569371198	59.102	0.80449	59.188	58.813	59.617	0.085682					67	21	4	0	0	0	0.27161	1	6634	6634		79.451	0	1	14951000			60892	17613	42775	42837	66138	66138					0.03068596892092046
PTRIGLIND	9	Unmodified	_PTRIGLIND_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.9025573730469	2	499.785099	997.555644	-0.7749	-0.00038728	0.96069	0.00048014	0.1858	9.2858E-05	499.78516053116925	43.726	1.1605	43.726	42.895	44.056	0					81	31	5	0	0	0	0.024261	1	4123	4123		54.776	22.821	1	2445200			60893	2844	42776	42838	66139	66139					0.05676858817514585
PTRIGLIND	9	Unmodified	_PTRIGLIND_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.90185546875	2	499.785099	997.555644	0.0089745	4.4853E-06	-0.38941	-0.00019462	-0.38044	-0.00019014	499.78481527009137	43.754	0.67732	43.785	43.558	44.235	0.030827					56	18	5	0	0	0	0.024344	1	4090	4090		45.972	8.8131	1	2537600			60894	2844	42776	42838	66140	66140					0.05676858817514585
PTRLAINL	8	Unmodified	_PTRLAINL_					0	0	0		ENST00000483318.5_1_6:30879748-30879964:+|nuORF;ENST00000477288.5_1_6:30876177-30879964:+|nuORF;ENSG00000213780|ENST00000259895|GTF2H4	ENST00000483318.5_1_6:30879748-30879964:+|nuORF	ENST00000483318.5_1_6:30879748-30879964:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2637023925781	2	449.279452	896.544351	-0.67008	-0.00030105	0.84852	0.00038122	0.17844	8.0169E-05	449.279697565932	60.571	0.70245	60.571	60.294	60.996	0					46	18	3	0	0	0	0.027866	1	7023	7023		16.473	0	1	1490700			60895	10521	42777	42839	66141	66141					0.09194081514021946
PTRLGALTGL	10	Unmodified	_PTRLGALTGL_					0	0	0			REV__ENST00000375155.7_1_1:19639357-19644298:+|nuORF	REV__ENST00000375155.7_1_1:19639357-19644298:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.9025573730469	2	499.803291	997.59203	-0.78578	-0.00039274	2.9432	0.001471	2.1574	0.0010783	499.8029080987387	43.717	1.0759	43.717	43.075	44.151	0					95	29	6	0	0	0	0.03519	1	4123	4123		39.253	4.0521	1	5438700	+		60896	31320	42778	42840	66142	66142					0.09313735714226823
PTRLGALTGL	10	Unmodified	_PTRLGALTGL_					0	0	0			REV__ENST00000375155.7_1_1:19639357-19644298:+|nuORF	REV__ENST00000375155.7_1_1:19639357-19644298:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.90167236328125	2	499.803291	997.59203	0.011401	5.6984E-06	2.2087	0.0011039	2.2201	0.0011096	499.8025201915125	43.771	0.86736	43.802	43.302	44.17	0.030823					78	23	5	0	0	0	0.03519	1	4060	4060		47.657	19.775	1	5449100	+		60897	31320	42778	42840	66143	66143					0.09313735714226823
PTRLPQPCS	9	Unmodified	_PTRLPQPCS_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.802978515625	2	499.758027	997.5015	-0.40032	-0.00020006	0.51325	0.0002565	0.11292	5.6434E-05	499.7581452192923	36.278	0.51896	36.316	35.855	36.374	0.038044					44	14	4	0	0	0	0.024427	1	2804	2804		42.396	24.072	1	1261500			60898	18608	42779	42841	66144	66144					0.0026494339430200853
PTRPGLDSL	9	Unmodified	_PTRPGLDSL_					0	0	0			REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	REV__ENST00000373095.5_1_9:130716150-130742615:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.2637023925781	2	478.263999	954.513445	-0.17012	-8.1363E-05	-0.49503	-0.00023676	-0.66516	-0.00031812	478.26353279569645	38.808	0.80521	38.709	38.358	39.163	-0.098751					63	21	5	0	0	0	0.56934	1	3261	3261		54.776	1.4249	1	5460700	+		60899	31236	42780	42842	66145	66145					0.03436883409131042
PTRPRKPD	8	Unmodified	_PTRPRKPD_					0	0	0		nc|nan|Q2NKX9-3|C2orf68;ENST00000420686.5_1_2:85836070-85838959:-|nuORF;ENSG00000168887|ENST00000306336|C2orf68	nc|nan|Q2NKX9-3|C2orf68	nc|nan|Q2NKX9-3|C2orf68	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.79022216796875	2	483.777608	965.540663	0.062024	3.0006E-05	-3.8098	-0.0018431	-3.7478	-0.0018131	483.77581479872794	46.205	1.1184	46.205	45.885	47.003	0					43	30	2	0	0	0	0.027866	1	4521	4521		47.657	8.4045	1	523100			60900	7876	42781	42843	66146	66146					0.056514117401775366
PTRQLPQQKGL	11	Unmodified	_PTRQLPQQKGL_					0	0	0			REV__ENST00000354179.8_2_5:176721804-176722098:+|nuORF	REV__ENST00000354179.8_2_5:176721804-176722098:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3692016601562	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	1.0238	1	11839	11839		31.53	5.9558	1	3181800	+		60901	30749	42782	42844	66147	66147					0.1033955510006308
PTRWAAVLL	9	Unmodified	_PTRWAAVLL_					0	0	0			REV__ENST00000409806.7_2_6:149806061-149806154:-|nuORF	REV__ENST00000409806.7_2_6:149806061-149806154:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.831298828125	2	513.808377	1025.6022	-0.56695	-0.0002913	0.8783	0.00045128	0.31135	0.00015997	513.8084068808885	67.078	0.56734	67.078	66.841	67.408	0					24	13	2	0	0	0	0.023655	1	8027	8027		79.713	19.309	1	341100	+		60902	31971	42783	42845	66148	66148					0.0904234343945518
PTRWAAVLL	9	Unmodified	_PTRWAAVLL_					0	0	0			REV__ENST00000409806.7_2_6:149806061-149806154:-|nuORF	REV__ENST00000409806.7_2_6:149806061-149806154:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8313598632812	2	513.808377	1025.6022	-0.27322	-0.00014038	0.43361	0.00022279	0.16039	8.2409E-05	513.8081990799116	67.391	0.59754	67.103	66.832	67.429	-0.28834					23	14	2	0	0	0	0.023454	1	8039	8039		71.877	0	1	317700	+		60903	31971	42783	42845	66149	66149					0.0904234343945518
PTRWSCWVT	9	Unmodified	_PTRWSCWVT_					0	0	0			REV__ENST00000473929.1_1_10:99186064-99186940:+|nuORF	REV__ENST00000473929.1_1_10:99186064-99186940:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3302612304688	2	568.271301	1134.52805	-1.348	-0.00076604	-2.3584	-0.0013402	-3.7064	-0.0021063	568.7716893517224	93.165	0.39329	93.026	92.829	93.223	-0.13995					10	8	2	0	0	0	0.024506	1	11447	11447		6.3127	0	1	38879	+		60904	33259	42784	42846	66150	66150					-0.033833677143775276
PTRYSVDIP	9	Unmodified	_PTRYSVDIP_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3034057617188	2	524.277106	1046.53966	0.30342	0.00015908	2.9393	0.001541	3.2427	0.0017001	524.2784950656721	88.015	0.61324	87.987	87.776	88.389	-0.027657					26	14	2	0	0	0	0.02435	1	11051	11051		51.335	5.3835	1	348740			60905	4528	42785	42847	66151	66151					0.01825152580613576
PTSDLEMR	8	Unmodified	_PTSDLEMR_					0	0	0		ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant;ENSG00000168916|ENST00000513986|ZNF608;ENSG00000180357|ENST00000326648|ZNF609	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant;ENSG00000180357|ENST00000326648|ZNF609	ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.2603759765625	2	474.726392	947.438231	-0.32419	-0.0001539	-1.4336	-0.00068058	-1.7578	-0.00083448	474.7253943795344	40.422	0.69739	40.272	40.04	40.737	-0.1497					42	18	4	0	0	0	0.027866	1	3512	3512		37.159	0	1	1648100			60906	38201;8976	42786	42848	66152	66152					-0.0375904211358602
PTSEAPPLP	9	Unmodified	_PTSEAPPLP_					0	0	0		ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7398376464844	2	454.739825	907.465098	0.14095	6.4097E-05	0.62743	0.00028532	0.76838	0.00034941	454.74000942355605	110.55	0.49195	110.43	110.14	110.63	-0.12524					32	15	3	0	0	0	1.0051	1	13580	13580		19.36	0	1	58158			60907	17302	42787	42849	66153	66153					0.007663897692395949
PTSEAPPLP	9	Unmodified	_PTSEAPPLP_					0	0	0		ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	454.739825	907.465098	1.5935	0.00072461	-0.6842	-0.00031113	0.90926	0.00041348	454.7394423273308	110.12	0.49171	110.12	110.02	110.51	0	-0.15997	-0.00095078	NaN	19.36	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188820			60908	17302	42787	42849							0.007663897692395949
PTSEAPPLP	9	Unmodified	_PTSEAPPLP_					0	0	0		ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.739825	907.465098	0.31377	0.00014269	0.34948	0.00015892	0.66326	0.00030161	454.739978791703	110.15	0.36364	110.14	110.01	110.38	-0.009491	-0.14246	-1.0659E-05	NaN	19.36	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214240			60909	17302	42787	42849							0.007663897692395949
PTSEAPPLP	9	Unmodified	_PTSEAPPLP_					0	0	0		ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	454.739825	907.465098	0.22956	0.00010439	0.68152	0.00030991	0.91108	0.00041431	454.740010972958	110.26	0.46487	110.27	110.11	110.57	0.0059204	-0.013222	0.00029132	NaN	19.36	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180810			60910	17302	42787	42849							0.007663897692395949
PTSEAPPLP	9	Unmodified	_PTSEAPPLP_					0	0	0		ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	ENST00000589123.5_2_19:3465565-3466177:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	454.739825	907.465098	-1.2705	-0.00057776	1.7213	0.00078276	0.45082	0.000205	454.7404639824141	110.59	0.43383	110.45	110.27	110.7	-0.13983	0.16803	0.001237	NaN	19.36	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26106			60911	17302	42787	42849							0.007663897692395949
PTSGAELVAE	10	Unmodified	_PTSGAELVAE_					0	0	0			REV__ENST00000439129.5_2_22:42532414-42532645:+|nuORF	REV__ENST00000439129.5_2_22:42532414-42532645:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7749328613281	2	487.245472	972.476391	-1.378	-0.00067141	1.2939	0.00063044	-0.084085	-4.097E-05	487.2462162003783	55.342	0.84776	55.44	55.22	56.067	0.098015					30	22	3	0	0	0	0.03519	1	6114	6114		69.628	12.907	1	200410	+		60912	32501	42788	42850	66154	66154					-0.010948329272764568
PTSIALCISV	10	Unmodified	_PTSIALCISV_					0	0	0			REV__ENSG00000165819|ENST00000298717|METTL3	REV__ENSG00000165819|ENST00000298717|METTL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2762451171875	2	502.27826	1002.54197	-0.92848	-0.00046636	-2.406	-0.0012085	-3.3345	-0.0016748	502.27662415833487	64.937	1.0471	64.734	64.301	65.348	-0.20254					71	25	4	0	0	0	0.74632	1	7412	7412		64.207	0.901	1	1954100	+		60913	25935	42789	42851	66155	66155					0.0407986499405979
PTSIVEDIPP	10	Unmodified	_PTSIVEDIPP_					0	0	0			REV__ENSG00000114030|ENST00000344337|KPNA1	REV__ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.282470703125	2	534.284597	1066.55464	0.19585	0.00010464	-1.5932	-0.00085121	-1.3973	-0.00074657	534.2835576790933	107.97	0.66961	107.82	107.48	108.15	-0.15439					64	34	3	0	0	0	1.089	1	13365	13365		34.173	3.6689	1	2851500	+		60914	22102	42790	42852	66156	66156					0.02402599657943938
PTSMTTECI	9	Unmodified	_PTSMTTECI_					0	0	0		ENST00000553891.5_1_14:73444911-73445651:-|nuORF	ENST00000553891.5_1_14:73444911-73445651:-|nuORF	ENST00000553891.5_1_14:73444911-73445651:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2767639160156	2	491.714636	981.414719	-0.45916	-0.00022577	-2.7753	-0.0013646	-3.2344	-0.0015904	491.7131363759612	40.839	1.827	40.862	40.162	41.99	0.023006					92	51	3	0	0	0	0.024323	1	3497	3497		63.306	40.264	1	633540			60915	16646	42791	42853	66157	66157					-0.07673223942435925
PTSPAALVMA	10	Unmodified	_PTSPAALVMA_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2772216796875	2	479.257328	956.500103	-0.18438	-8.8365E-05	0.043284	2.0744E-05	-0.14109	-6.7621E-05	479.25697087449004	82.856	0.21432	82.716	82.608	82.823	-0.14014					6	4	2	0	0	0	0.03519	1	9978	9978		21.96	0	1	29773			60916	9888	42792	42854	66158	66158					0.020113093055442732
PTSPSRRPAR	10	Unmodified	_PTSPSRRPAR_					0	0	0			REV__ENST00000369385.5_1_1:149814728-149815097:+|nuORF	REV__ENST00000369385.5_1_1:149814728-149815097:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.7986450195312	2	562.817796	1123.62104	0.36867	0.0002075	-3.5074	-0.001974	-3.1388	-0.0017665	563.3189566958092	101.88	0.66409	101.74	101.36	102.03	-0.13137					22	15	2	0	0	0	0.03519	1	12637	12637		15.642	0	1	39600	+		60917	31085	42793	42855	66159	66159					0.06417273063220819
PTSRGAKCP	9	Unmodified	_PTSRGAKCP_					0	0	0		ENST00000511316.1_1_4:174254289-174255443:-|nuORF	ENST00000511316.1_1_4:174254289-174255443:-|nuORF	ENST00000511316.1_1_4:174254289-174255443:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2486267089844	2	458.737094	915.459635	-0.88616	-0.00040652	1.4535	0.00066676	0.5673	0.00026024	458.73758559235324	30.364	0.53878	30.364	30.137	30.675	0					21	12	2	0	0	0	0.024292	1	1982	1982		58.782	40.458	1	538430			60918	15834	42794	42856	66160	66160					-0.0014761229422219913
PTSRPEDGAS	10	Unmodified	_PTSRPEDGAS_					0	0	0			REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.782470703125	2	508.735803	1015.45705	-0.84749	-0.00043115	2.4658	0.0012544	1.6183	0.00082329	508.73665810284353	48.53	0.47721	48.432	48.291	48.768	-0.097553					18	12	2	0	0	0	0.03519	1	4826	4826		19.997	0	1	88580	+		60919	29132	42795	42857	66161	66161					-0.05005789218193968
PTSTMIIFI	9	Unmodified	_PTSTMIIFI_					0	0	0		ENST00000395246.5_1_5:130727872-130728007:+|nuORF	ENST00000395246.5_1_5:130727872-130728007:+|nuORF	ENST00000395246.5_1_5:130727872-130728007:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2686462402344	2	511.783179	1021.5518	-1.2371	-0.00063314	3.5665	0.0018253	2.3294	0.0011921	511.78482281566784	43.929	0.42043	43.929	43.731	44.151	0					16	11	2	0	0	0	0.024294	1	4163	4163		55.504	9.532	1	129710			60920	13507	42796	42858	66162	66162					0.0418905299944754
PTSTMIIFI	9	Unmodified	_PTSTMIIFI_					0	0	0		ENST00000395246.5_1_5:130727872-130728007:+|nuORF	ENST00000395246.5_1_5:130727872-130728007:+|nuORF	ENST00000395246.5_1_5:130727872-130728007:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.783179	1021.5518	-0.49723	-0.00025447	3.1638	0.0016192	2.6665	0.0013647	511.7845055997911	43.958	0.2902	43.994	43.818	44.108	0.0369	0.057916	-0.00039871	NaN	55.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155020			60921	13507	42796	42858							0.0418905299944754
PTSVFLFQ	8	Unmodified	_PTSVFLFQ_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.7509765625	2	469.752736	937.490919	-0.32192	-0.00015122	-3.877	-0.0018212	-4.1989	-0.0019724	469.7506951610827	30.099	1.8881	30.173	29.562	31.45	0.074316					114	45	4	0	0	0	0.93274	1	1859	1859		47.916	3.3845	1	1037000	+		60922	27937	42797	42859	66163	66163					0.019672840115163126
PTSYIVGYKN	10	Unmodified	_PTSYIVGYKN_					0	0	0			REV__ENSG00000109787|ENST00000261438|KLF3	REV__ENSG00000109787|ENST00000261438|KLF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.340087890625	2	571.298039	1140.58152	-0.061426	-3.5093E-05	0.20937	0.00011961	0.14795	8.4521E-05	571.2981835137269	72.505	0.65172	72.514	72.25	72.902	0.0097733					37	15	3	0	0	0	0.03519	1	8716	8716		34.173	0	1	702870	+		60923	21815	42798	42860	66164	66164					0.01685708269155839
PTTAVPLL	8	Unmodified	_PTTAVPLL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.24884033203125	2	406.249829	810.485105	0.063182	2.5668E-05	-3.4775	-0.0014127	-3.4143	-0.0013871	406.2481263953066	90.192	1.1204	90.067	89.632	90.753	-0.12512					54	26	3	0	0	0	1.0572	1	11034	11034		28.254	1.4582	1	813700			60924	9025	42799	42861	66165	66165					0.07228185499855044
PTTGQKLS	8	Unmodified	_PTTGQKLS_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.206787109375	2	416.232168	830.449782	-0.85658	-0.00035653	-2.0766	-0.00086435	-2.9332	-0.0012209	416.23235731826185	26.574	1.0704	26.338	25.55	26.62	-0.23603					41	28	3	0	0	0	0.027866	1	1400	1400		35.618	5.1146	1	213110			60925	2053	42800	42862	66166	66166					0.027775229720305106
PTTPINLPVPV	11	Unmodified	_PTTPINLPVPV_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.7860717773438	2	574.339707	1146.66486	0.94287	0.00054153	-2.3385	-0.0013431	-1.3957	-0.00080158	574.3382717967315	70.75	0.38817	70.457	70.368	70.756	-0.29292					10	8	2	0	0	0	0.024812	1	8541	8541		49.536	16.724	1	242290	+		60926	20873	42801	42863	66167	66167					0.09739444716979051
PTTPLLKWTLR	11	Unmodified	_PTTPLLKWTLR_					0	0	0		FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.6013488769531	3	442.602845	1324.78671	-0.23145	-0.00010244	-3.7713	-0.0016692	-4.0027	-0.0017716	442.60109763149904	102.37	0.6118	102.37	102.08	102.69	0					24	13	2	0	0	0	1.0558	1	13117	13117		23.514	0.13644	1	667140			60927	17640	42802	42864	66168	66168					0.13730486799363462
PTTVRPKS	8	Unmodified	_PTTVRPKS_					0	0	0			REV__ENSG00000198807|ENST00000361487|PAX9;REV__nc|ENSG00000125813|P15863-2|PAX1	REV__ENSG00000198807|ENST00000361487|PAX9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.74072265625	2	443.261259	884.507966	-0.35621	-0.00015789	0.58257	0.00025823	0.22637	0.00010034	443.2613815471213	22.141	1.3999	22.141	21.723	23.123	0					78	29	4	0	0	0	0.027866	1	785	785		14.865	0	1	630600	+		60928	28485;36638	42803	42865	66169	66169					0.061092046173257586
PTVEFPPDL	9	Unmodified	_PTVEFPPDL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.28033447265625	2	507.760758	1013.50696	-0.40927	-0.00020781	2.1271	0.0010801	1.7179	0.00087227	507.76060748844884	47.972	0.52056	47.874	47.593	48.114	-0.097553					20	13	2	0	0	0	0.024381	1	4721	4721		21.96	7.2958	1	702290			60929	9952	42804	42866	66170	66170					0.0007494545775443839
PTVFHYKL	8	Unmodified	_PTVFHYKL_					0	0	0			REV__CON__Q0V8M9;REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7510681152344	2	502.781828	1003.5491	-0.065784	-3.3075E-05	-0.068205	-3.4292E-05	-0.13399	-6.7367E-05	502.7816679313085	33.818	0.27602	33.594	33.404	33.68	-0.22412					12	6	2	0	0	0	0.027866	1	2442	2442		47.916	27.919	1	155730	+	+	60930	25424;19565	42805	42867	66171	66171					0.04746965656784141
PTVFVCLKP	9	Unmodified	_PTVFVCLKP_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7572326660156	2	502.285889	1002.55722	-1.2671	-0.00063645	-2.0923	-0.0010509	-3.3594	-0.0016874	502.28481785948037	44.39	1.0273	44.245	43.534	44.561	-0.14471					72	29	4	0	0	0	0.024427	1	4102	4102		34.173	2.6427	1	18960000	+		60931	27006	42806	42868	66172	66172					0.056047765819016604
PTVILLPI	8	Unmodified	_PTVILLPI_					0	0	0		ENST00000033079.7_2_5:137288358-137289125:-|nuORF	ENST00000033079.7_2_5:137288358-137289125:-|nuORF	ENST00000033079.7_2_5:137288358-137289125:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.54833984375	2	433.291497	864.568441	0.5495	0.0002381	-3.2367	-0.0014024	-2.6872	-0.0011643	433.289946988167	24.354	0.99863	24.432	23.824	24.823	0.078344					37	21	3	0	0	0	0.027866	1	1018	1018		4.3163	0	1	181740			60932	11103	42807	42869	66173	66173					0.13073921947716372
PTVLPLFV	8	Unmodified	_PTVLPLFV_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.25250244140625	2	443.275847	884.537141	-0.18875	-8.3667E-05	0.84351	0.00037391	0.65476	0.00029024	443.27637532147673	45.413	0.19501	45.202	45.089	45.284	-0.21109					7	5	2	0	0	0	0.027866	1	4275	4275		13.775	3.5906	1	57387	+		60933	25956	42808	42870	66174	66174					0.09025348913621656
PTVNIDADQL	10	Unmodified	_PTVNIDADQL_					0	0	0		nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2442016601562	2	543.277303	1084.54005	-0.73059	-0.00039691	0.72075	0.00039157	-0.0098376	-5.3445E-06	543.2767163967661	64.789	0.35153	64.554	64.256	64.607	-0.2345					11	8	2	0	0	0	0.03519	1	7358	7358		38.754	0	1	81173			60934	18851	42809	42871	66175	66175					0.001165275098173879
PTVPAAVEV	9	Unmodified	_PTVPAAVEV_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2661437988281	2	441.750193	881.485833	-0.37016	-0.00016352	3.7444	0.0016541	3.3742	0.0014906	441.7522548875681	60.681	1.2064	60.468	59.924	61.131	-0.2134					54	31	3	0	0	0	0.024405	1	6925	6925		20.947	3.582	1	1046900			60935	8096	42810	42872	66176	66176					0.04034980148901468
PTVSVMLPLH	10	Unmodified	_PTVSVMLPLH_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7820434570312	2	547.307352	1092.60015	-0.48227	-0.00026395	4.4661	0.0024443	3.9838	0.0021804	547.3095984605592	75.716	0.19545	75.444	75.267	75.462	-0.27266					7	4	2	0	0	0	0.03519	1	8935	8935		23.042	2.0956	1	85554			60936	1054	42811	42873	66177	66177					0.0575554663935236
PTVTATIDP	9	Unmodified	_PTVTATIDP_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.15582275390625	2	457.745108	913.475663	-0.32249	-0.00014762	2.0688	0.000947	1.7464	0.00079938	457.74587552936845	39.877	0.6246	39.652	39.341	39.965	-0.225					30	15	3	0	0	0	0.024457	1	3421	3421		29.15	25.99	1	229720	+		60937	27215	42812	42874	66178	66178					0.015463724236610688
PTVTWALDD	9	Unmodified	_PTVTWALDD_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2873229980469	2	509.248015	1016.48148	-0.44804	-0.00022816	4.2055	0.0021417	3.7575	0.0019135	509.2506213968544	52.565	0.84764	52.438	51.824	52.672	-0.12705					41	21	3	0	0	0	0.024381	1	5474	5474		29.15	2.3535	1	958700			60938	8707	42813	42875	66179	66179					-0.026105290646682988
PTWGRPGSR	9	Unmodified	_PTWGRPGSR_					0	0	0			REV__nc|ENSG00000162913|Q96MR7|OBSCN-AS1	REV__nc|ENSG00000162913|Q96MR7|OBSCN-AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7823181152344	2	507.267407	1012.52026	-0.56693	-0.00028759	3.8588	0.0019575	3.2919	0.0016699	507.2690316322124	49.057	0.47477	48.777	48.575	49.049	-0.27977					17	12	2	0	0	0	0.024405	1	4860	4860		35.618	11.416	1	101410	+		60939	36848	42814	42876	66180	66180					0.01450241080374326
PTWLAPNL	8	Unmodified	_PTWLAPNL_					0	0	0		ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.74896240234375	2	456.252903	910.491253	-0.069796	-3.1845E-05	-3.0115	-0.001374	-3.0813	-0.0014059	456.2511945581105	29.041	1.8502	29.119	28.739	30.59	0.078346					78	45	3	0	0	0	0.027866	1	1802	1802		31.955	8.9124	1	544530			60940	5190	42815	42877	66181	66181					0.03242703731382335
PTWQPKTV	8	Unmodified	_PTWQPKTV_					0	0	0			REV__ENST00000519643.5_1_5:171789819-171800796:-|nuORF	REV__ENST00000519643.5_1_5:171789819-171800796:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7355651855469	2	478.763635	955.512717	1.5824	0.00075761	1.9969	0.00095607	3.5794	0.0017137	478.76445517544494	59.819	0.53144	59.622	59.38	59.911	-0.19742					22	13	2	0	0	0	0.027866	1	6636	6636		51.335	7.2187	1	614540	+		60941	34263	42816	42878	66182	66182					0.033180887601020004
PTWSGWAL	8	Unmodified	_PTWSGWAL_					0	0	0			REV__ENSG00000163501|ENST00000295731|IHH	REV__ENSG00000163501|ENST00000295731|IHH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2297058105469	2	459.229428	916.444303	-0.33672	-0.00015463	0.040837	1.8754E-05	-0.29588	-0.00013588	459.22931901573475	30.605	3.4956	30.614	29.319	32.815	0.0086708					169	86	3	0	0	0	0.78609	1	1985	1985		60.294	4.7898	1	1253400	+		60942	25577	42817	42879	66183	66183					-0.01726155819756059
PVAAPQRQF	9	Unmodified	_PVAAPQRQF_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2796325683594	2	507.279983	1012.54541	-0.44595	-0.00022622	-0.38445	-0.00019503	-0.8304	-0.00042125	507.27989582869645	49.861	1.2667	49.861	49.473	50.74	0					100	36	5	0	0	0	0.36105	1	5179	5179		68.485	10.673	1	21196000	+		60943	27989	42818	42880	66184	66184					0.03964295882940405
PVAAPQRQF	9	Unmodified	_PVAAPQRQF_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.28021240234375	2	507.279983	1012.54541	-0.078383	-3.9762E-05	-0.71418	-0.00036229	-0.79257	-0.00040205	507.279734531571	50.079	1.2699	49.928	49.52	50.79	-0.1512					104	36	5	0	0	0	0.52323	1	5197	5197		57.811	9.8957	1	19859000	+		60944	27989	42818	42880	66185	66185					0.03964295882940405
PVAAVHLFL	9	Unmodified	_PVAAVHLFL_					0	0	0		ENST00000507297.5_1_5:138860690-138860894:-|nuORF	ENST00000507297.5_1_5:138860690-138860894:-|nuORF	ENST00000507297.5_1_5:138860690-138860894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7659606933594	2	483.792195	965.569838	-1.1518	-0.00055721	-3.1846	-0.0015407	-4.3364	-0.0020979	483.7905493111385	47.474	1.0413	47.533	47.179	48.22	0.059097					69	30	3	0	0	0	0.024541	1	4657	4657		21.702	4.3374	1	5738300			60945	15759	42819	42881	66186	66186					0.08567556036450696
PVAPFPWKV	9	Unmodified	_PVAPFPWKV_					0	0	0			REV__nc|ENSG00000102125|Q16635-7|TAFAZZIN	REV__nc|ENSG00000102125|Q16635-7|TAFAZZIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7793579101562	2	520.80002	1039.58549	0.4855	0.00025285	-2.9766	-0.0015502	-2.4911	-0.0012974	520.7985659012652	63.493	0.27061	63.234	63.081	63.352	-0.25824					11	6	2	0	0	0	0.024535	1	7146	7146		18.324	0	1	100360	+		60946	21290	42820	42882	66187	66187					0.0672784255350507
PVAQQARQAEE	11	Unmodified	_PVAQQARQAEE_					0	0	0			REV__nc|ENSG00000258992|Q01534-2|TSPY1	REV__nc|ENSG00000258992|Q01534-2|TSPY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.5426025390625	3	409.542314	1225.60511	-0.24943	-0.00010215	0.37622	0.00015408	0.12679	5.1926E-05	409.54270309803894	22.128	1.2295	21.926	21.517	22.747	-0.20198					86	25	6	0	0	0	1.0281	1	747	747		30.569	3.5215	1	2848400	+		60947	26287	42821	42883	66188	66188					0.0013352203568501864
PVARLGAR	8	Unmodified	_PVARLGAR_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.7506408691406	2	420.264136	838.51372	-0.057094	-2.3995E-05	0.60657	0.00025492	0.54948	0.00023093	420.26425220718073	42.135	0.55465	42.012	41.752	42.307	-0.12299					31	14	3	0	0	0	0.027866	1	3758	3758		20.482	0	1	776720			60948	1472	42822	42884	66189	66189					0.0880034791965727
PVARLRTTW	9	Unmodified	_PVARLRTTW_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.322509765625	2	550.322183	1098.62981	0.12513	6.8863E-05	-0.25877	-0.00014241	-0.13364	-7.3543E-05	550.3218974289706	47.281	0.69364	47.012	46.695	47.389	-0.26939					49	18	3	0	0	0	0.29104	1	4607	4607		76.847	12.639	1	2605200			60949	2994	42823	42885	66190	66190					0.08444246699696123
PVARTLGR	8	Unmodified	_PVARTLGR_					0	0	0			REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2098693847656	2	435.269419	868.524284	0.45313	0.00019723	-0.38598	-0.00016801	0.067151	2.9229E-05	435.269063872143	98.578	0.72896	98.578	98.317	99.045	0					36	16	3	0	0	0	0.027866	1	12570	12570		19.36	15.044	1	316580	+		60950	35333	42824	42886	66191	66191					0.08476330574092117
PVARTLGR	8	Unmodified	_PVARTLGR_					0	0	0			REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.269419	868.524284	0.40082	0.00017447	0.71462	0.00031105	1.1154	0.00048552	435.26982889516694	98.552	1.3449	98.562	98.315	99.66	0.010239	-0.035057	0.0010879	NaN	19.36	53	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318930	+		60951	35333	42824	42886							0.08476330574092117
PVARTLGR	8	Unmodified	_PVARTLGR_					0	0	0			REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	435.269419	868.524284	0.74963	0.00032629	-0.2341	-0.0001019	0.51553	0.0002244	435.2689509553337	98.703	0.62022	98.567	98.277	98.897	-0.13625	-0.030331	0.00026201	NaN	19.36	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208150	+		60952	35333	42824	42886							0.08476330574092117
PVARTLGR	8	Unmodified	_PVARTLGR_					0	0	0			REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.269419	868.524284	1.1957	0.00052044	-0.92379	-0.0004021	0.27188	0.00011834	435.2687495639307	98.709	0.54118	98.585	98.329	98.87	-0.12413	-0.012342	-0.00033839	NaN	19.36	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204740	+		60953	35333	42824	42886							0.08476330574092117
PVARTLGR	8	Unmodified	_PVARTLGR_					0	0	0			REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	435.269419	868.524284	0.35919	0.00015635	-0.50088	-0.00021802	-0.14168	-6.1669E-05	435.26900263244016	98.786	0.74529	98.618	98.284	99.029	-0.16862	0.020591	2.9775E-05	NaN	19.36	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200540	+		60954	35333	42824	42886							0.08476330574092117
PVASSTVLIP	10	Unmodified	_PVASSTVLIP_					0	0	0		ENST00000576090.5_1_17:79211356-79211560:-|nuORF;ENST00000572050.1_3_17:79211356-79212635:-|nuORF	ENST00000576090.5_1_17:79211356-79211560:-|nuORF	ENST00000576090.5_1_17:79211356-79211560:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.27264404296875	2	492.292225	982.569897	-0.065722	-3.2354E-05	-3.2847	-0.001617	-3.3504	-0.0016494	492.29057622462864	24.096	0.4069	24.174	23.912	24.319	0.078344					12	8	2	0	0	0	0.03519	1	943	943		23.042	0	1	75953			60955	17054	42825	42887	66192	66192					0.07791511245807214
PVAVTKGM	8	Unmodified	_PVAVTKGM_					0	0	0			REV__TMEM132D|p.T444M|1|0.22|ENSG00000151952|chr12:129209632-129209632|G/A|missense_variant	REV__TMEM132D|p.T444M|1|0.22|ENSG00000151952|chr12:129209632-129209632|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.7311706542969	2	401.728206	801.44186	3.9281	0.001578	3.0048	0.0012071	6.9329	0.0027852	401.7293001547597	17.696	0.39296	17.446	17.276	17.669	-0.25049					11	7	2	0	0	0	1.0574	1	191	191		20.482	0	1	82728	+		60956	37706	42826	42888	66193	66193					0.03319672450925282
PVAVTKGM	8	Unmodified	_PVAVTKGM_					0	0	0			REV__TMEM132D|p.T444M|1|0.22|ENSG00000151952|chr12:129209632-129209632|G/A|missense_variant	REV__TMEM132D|p.T444M|1|0.22|ENSG00000151952|chr12:129209632-129209632|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	401.728206	801.44186	0.88159	0.00035416	6.2469	0.0025096	7.1285	0.0028637	401.730572573472	17.645	0.4985	17.439	17.216	17.714	-0.20669	-0.0033892	0.0016783	NaN	20.482	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57733	+		60957	37706	42826	42888							0.03319672450925282
PVAVTKGM	8	Unmodified	_PVAVTKGM_					0	0	0			REV__TMEM132D|p.T444M|1|0.22|ENSG00000151952|chr12:129209632-129209632|G/A|missense_variant	REV__TMEM132D|p.T444M|1|0.22|ENSG00000151952|chr12:129209632-129209632|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	401.728206	801.44186	3.9281	0.001578	3.0048	0.0012071	6.9329	0.0027852	401.7293001547597	17.696	0.39296	17.446	17.276	17.669	-0.25049	0.0033892	-0.00092658	NaN	20.482	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82728	+		60958	37706	42826	42888							0.03319672450925282
PVCATVCFNS	10	Unmodified	_PVCATVCFNS_					0	0	0		ENST00000322157.8_1_17:45700205-45700385:+|nuORF	ENST00000322157.8_1_17:45700205-45700385:+|nuORF	ENST00000322157.8_1_17:45700205-45700385:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7698364257812	2	520.73062	1039.44669	-0.90202	-0.00046971	-3.4123	-0.0017769	-4.3143	-0.0022466	520.728742883232	22.209	0.51296	22.209	22.012	22.525	0					15	10	2	0	0	0	0.03519	1	750	750		25.574	10.709	1	35173			60959	12217	42827	42889	66194	66194					-0.07145811468626562
PVCATVCFNS	10	Unmodified	_PVCATVCFNS_					0	0	0		ENST00000322157.8_1_17:45700205-45700385:+|nuORF	ENST00000322157.8_1_17:45700205-45700385:+|nuORF	ENST00000322157.8_1_17:45700205-45700385:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.76953125	2	520.73062	1039.44669	-0.48815	-0.0002542	-3.6779	-0.0019152	-4.1661	-0.0021694	520.728285742946	22.415	0.32873	22.34	22.13	22.458	-0.075296					9	6	2	0	0	0	0.03519	1	761	761		19.997	0	1	8131.3			60960	12217	42827	42889	66195	66195					-0.07145811468626562
PVCLLLLASP	10	Unmodified	_PVCLLLLASP_					0	0	0			REV__nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H	REV__nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2980346679688	2	513.306821	1024.59909	-0.82282	-0.00042236	3.0145	0.0015473	2.1916	0.001125	513.3087043972339	35.047	0.66913	35.047	34.785	35.455	0					36	17	3	0	0	0	0.03519	1	2678	2678		38.806	3.1879	1	384770	+		60961	37209	42828	42890	66196	66196					0.08777332270460647
PVCLWGEGR	9	Unmodified	_PVCLWGEGR_					0	0	0		ENST00000395719.7_1_4:76569462-76569531:-|nuORF	ENST00000395719.7_1_4:76569462-76569531:-|nuORF	ENST00000395719.7_1_4:76569462-76569531:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2799987792969	2	508.752744	1015.49094	-0.57756	-0.00029383	-2.5266	-0.0012854	-3.1042	-0.0015793	509.2535227468697	48.069	0.1475	48.135	48.043	48.191	0.066795					5	3	2	0	0	0	0.024436	1	4805	4805		16.473	0	1	80824			60962	13527	42829	42891	66197	66197					-0.016190392601288295
PVDMALLGL	9	Unmodified	_PVDMALLGL_					0	0	0			REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	REV__ENST00000539690.1_1_12:121163604-121175022:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.23626708984375	2	464.762246	927.50994	0.27004	0.0001255	3.4745	0.0016148	3.7445	0.0017403	464.7638730907665	36.677	0.67067	36.715	36.409	37.08	0.038044					20	17	2	0	0	0	0.024325	1	2918	2918		40.573	0	1	161640	+		60963	34738	42830	42892	66198	66198					0.043284973109280145
PVDSAAETPP	10	Unmodified	_PVDSAAETPP_					0	0	0		ENSG00000169271|ENST00000302005|HSPB3	ENSG00000169271|ENST00000302005|HSPB3	ENSG00000169271|ENST00000302005|HSPB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.29779052734375	2	492.237647	982.460741	-0.71731	-0.00035309	-1.9767	-0.00097302	-2.694	-0.0013261	492.23664811132414	60.579	0.51497	60.579	60.33	60.845	0					29	13	3	0	0	0	0.03519	1	6970	6970		40.778	0	1	327110			60964	7921	42831	42893	66199	66199					-0.03119119444329499
PVDSHYYRKV	10	Unmodified	_PVDSHYYRKV_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5927429199219	3	421.887533	1262.64077	-0.03046	-1.2851E-05	3.3659	0.00142	3.3354	0.0014072	421.8888866389875	49.896	0.57283	49.977	49.737	50.31	0.080994					50	16	5	0	0	0	0.03519	1	5117	5117		15.333	0	1	1196700			60965	5209	42832	42894	66200	66200					0.019956042832973253
PVDVLYPY	8	Unmodified	_PVDVLYPY_					0	0	0		ENST00000533086.5_1_19:15228578-15234387:-|nuORF;ENSG00000105135|ENST00000263383|ILVBL	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2927551269531	2	483.252569	964.490584	0.1841	8.8966E-05	-3.4224	-0.0016539	-3.2383	-0.0015649	483.2508168719525	57.937	0.44014	57.937	57.719	58.159	0					23	11	3	0	0	0	0.027866	1	6536	6536		15.636	0	1	1094000			60966	2638	42833	42895	66201	66201					0.006918642916502904
PVDYIFLI	8	Unmodified	_PVDYIFLI_					0	0	0		HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;HCN1|p.Q689Sfs*91|1|0.12|ENSG00000164588|chr5:45262529-45262529|G/-|frameshift_variant;ENSG00000164588|ENST00000303230|HCN1;ENSG00000099822|ENST00000251287|HCN2;ENSG00000138622|ENST00000261917|HCN4	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;ENSG00000138622|ENST00000261917|HCN4	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.27783203125	2	490.278586	978.54262	0.024403	1.1964E-05	-4.4528	-0.0021831	-4.4284	-0.0021712	490.27636576777667	101.4	0.60201	101.4	101.02	101.62	-0.0054474					41	13	4	0	0	0	1.0017	1	12914	12914		37.028	0.58173	1	627060			60967	7294;5256	42834	42896	66202	66202					0.05249027705417575
PVEDHLEL	8	Unmodified	_PVEDHLEL_					0	0	0			REV__ENST00000483205.1_1_3:47551637-47555080:-|nuORF	REV__ENST00000483205.1_1_3:47551637-47555080:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.77667236328125	2	476.242732	950.470912	0.43918	0.00020916	0.9084	0.00043262	1.3476	0.00064178	476.24336343203004	71.604	0.64201	71.615	71.2	71.842	0.010735					33	16	3	0	0	0	0.027866	1	8620	8620		12.959	0	1	227620	+		60968	33503	42835	42897	66203	66203					-0.00630511719111837
PVEIDFLVL	9	Unmodified	_PVEIDFLVL_					0	0	0		ENST00000503993.1_1_4:88604289-88651599:-|nuORF	ENST00000503993.1_1_4:88604289-88651599:-|nuORF	ENST00000503993.1_1_4:88604289-88651599:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2720336914062	2	522.802426	1043.5903	-0.19756	-0.00010329	4.4861	0.0023454	4.2886	0.0022421	523.3076348753949	42.305	0.20457	42.331	42.255	42.459	0.026016					6	5	2	0	0	0	0.024466	1	3824	3824		25.45	0	1	58067			60969	15704	42836	42898	66204	66204					0.07024681905613761
PVEIKVVK	8	Unmodified	_PVEIKVVK_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.22|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant;nc|ENSG00000179119|Q68D10-3|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.28253173828125	2	456.299853	910.585153	-0.37892	-0.0001729	3.2497	0.0014828	2.8708	0.0013099	456.3012111015349	34.72	1.3398	34.513	34.284	35.623	-0.20695					93	33	4	0	0	0	0.027866	1	2569	2569		23.042	0	1	920540			60970	8873	42837	42899	66205	66205					0.1262842283365444
PVEIKVVK	8	Unmodified	_PVEIKVVK_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.22|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant;nc|ENSG00000179119|Q68D10-3|SPTY2D1	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.28302001953125	2	456.299853	910.585153	-0.42207	-0.00019259	3.3463	0.0015269	2.9242	0.0013343	456.30123061194314	34.649	1.4448	34.473	34.251	35.696	-0.17609					99	37	4	0	0	0	0.027866	1	2563	2563		11.511	0	1	1388100			60971	8873	42837	42899	66206	66206					0.1262842283365444
PVEPLPSNG	9	Unmodified	_PVEPLPSNG_					0	0	0		nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.2389221191406	2	455.23745	908.460347	0.11666	5.3106E-05	-1.1354	-0.00051686	-1.0187	-0.00046375	455.2369481254935	102.78	0.67911	102.79	102.5	103.18	0.0054169					39	16	3	0	0	0	0.92825	1	13127	13127		30.504	1.3541	1	1416400			60972	5094	42838	42900	66207	66207					0.002455056264693667
PVEPLPSNG	9	Unmodified	_PVEPLPSNG_					0	0	0		nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	nc|ENSG00000137166|Q8IVH2-3|FOXP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.238037109375	2	455.23745	908.460347	0.48569	0.0002211	-1.1699	-0.00053256	-0.68417	-0.00031146	455.23681456841655	102.94	0.65137	102.81	102.49	103.14	-0.12724					36	15	3	0	0	0	0.83071	1	12784	12784		37.159	3.6435	1	1184800			60973	5094	42838	42900	66208	66208					0.002455056264693667
PVEVIEESDD	10	Unmodified	_PVEVIEESDD_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.8190307617188	2	566.256234	1130.49791	-1.3662	-0.00077363	2.4489	0.0013867	1.0826	0.00061305	566.2573652535646	40.465	0.38815	40.488	40.275	40.663	0.023006					18	10	2	0	0	0	0.03519	1	3470	3470		49.442	15.926	1	326550	+		60974	20330	42839	42901	66209	66209					-0.06211492689226361
PVEVIEESDD	10	Unmodified	_PVEVIEESDD_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	566.256234	1130.49791	-0.31216	-0.00017676	1.2973	0.00073462	0.98517	0.00055786	566.2567651898385	40.294	0.42362	40.294	40.024	40.448	0	-0.042861	-0.00010789	NaN	49.442	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281000	+		60975	20330	42839	42901							-0.06211492689226361
PVEVIEESDD	10	Unmodified	_PVEVIEESDD_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.256234	1130.49791	-0.066611	-3.7719E-05	1.18	0.00066816	1.1134	0.00063045	566.2568995762849	40.34	0.40138	40.228	40.016	40.418	-0.11223	-0.10847	-0.0002408	NaN	49.442	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259760	+		60976	20330	42839	42901							-0.06211492689226361
PVEVPGQVQ	9	Unmodified	_PVEVPGQVQ_					0	0	0		ENST00000325686.6_1_13:44454160-44455088:+|nuORF	ENST00000325686.6_1_13:44454160-44455088:+|nuORF	ENST00000325686.6_1_13:44454160-44455088:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7583923339844	2	476.758549	951.502546	-0.47199	-0.00022503	-0.90635	-0.00043211	-1.3783	-0.00065714	476.75811604323286	104.24	0.52078	104.11	103.95	104.47	-0.12927					26	16	2	0	0	0	0.98128	1	12970	12970		24.203	1.1603	1	241170			60977	12274	42840	42902	66210	66210					0.024854810348642786
PVEVPRTSP	9	Unmodified	_PVEVPRTSP_					0	0	0			REV__ENSG00000186827|ENST00000379236|TNFRSF4	REV__ENSG00000186827|ENST00000379236|TNFRSF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.23504638671875	2	491.271824	980.529095	0.015238	7.4858E-06	0.26411	0.00012975	0.27935	0.00013723	491.27175354172357	39.695	1.4731	39.465	38.869	40.343	-0.23021					67	38	3	0	0	0	0.024466	1	3499	3499		31.53	0	1	391490	+		60978	27886	42841	42903	66211	66211					0.03805169926192775
PVFYRETV	8	Unmodified	_PVFYRETV_					0	0	0		ENSG00000121807|ENST00000445132|CCR2	ENSG00000121807|ENST00000445132|CCR2	ENSG00000121807|ENST00000445132|CCR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.2928771972656	2	505.768917	1009.52328	-1.0725	-0.00054243	4.1337	0.0020907	3.0612	0.0015482	505.77096418880814	44.514	0.51092	44.514	44.247	44.758	0					22	14	2	0	0	0	0.027866	1	4251	4251		19.36	1.0356	1	207160			60979	3889	42842	42904	66212	66212					0.018900714145161146
PVGAAGPAAAK	11	Unmodified	_PVGAAGPAAAK_					0	0	0			REV__ENST00000396625.3_1_2:228012214-228028792:-|nuORF	REV__ENST00000396625.3_1_2:228012214-228028792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.78912353515625	2	455.261259	908.507966	-0.45171	-0.00020564	1.3158	0.00059902	0.86406	0.00039337	455.2615199649037	25.738	0.68052	25.704	25.432	26.113	-0.034395					25	15	2	0	0	0	0.024801	1	1246	1246		55.504	34.557	1	137730	+		60980	31744	42843	42905	66213	66213					0.050052046173163944
PVGAVRIGI	9	Unmodified	_PVGAVRIGI_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2658386230469	2	441.281995	880.549437	-0.54198	-0.00023917	1.4333	0.0006325	0.89134	0.00039333	441.2820158574842	39.171	0.31994	39.072	38.949	39.269	-0.098755					11	8	2	0	0	0	0.024293	1	3362	3362		42.474	21.528	1	63103			60981	5193	42844	42906	66214	66214					0.10438385376664883
PVGCLGEAGHV	11	Unmodified	_PVGCLGEAGHV_					0	0	0		ENSG00000011201|ENST00000262648|ANOS1;ENST00000481896.1_1_X:8503574-8504959:-|nuORF	ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2861328125	2	519.755484	1037.49641	-0.62198	-0.00032328	2.2234	0.0011556	1.6014	0.00083236	519.7556538716311	26.552	0.70073	26.552	26.124	26.825	0					23	16	2	0	0	0	0.024482	1	1381	1381		71.296	19.96	1	72816			60982	889	42845	42907	66215	66215					-0.02083360468304818
PVGDAPPPPP	10	Unmodified	_PVGDAPPPPP_					0	0	0			REV__ENSG00000173473|ENST00000254480|SMARCC1	REV__ENSG00000173473|ENST00000254480|SMARCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.245849609375	2	472.247818	942.481082	0.16122	7.6135E-05	-4.2008	-0.0019838	-4.0395	-0.0019077	472.24568220934134	22.221	0.98047	22.221	21.868	22.848	0					55	20	4	0	0	0	0.87795	1	759	759		55.504	0.72789	1	684890	+		60983	26775	42846	42908	66216	66216					0.007540960061305668
PVGEAEAPPI	10	Unmodified	_PVGEAEAPPI_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2583312988281	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	1.1166	1	13133	13133		30.504	0	1	4976900	+		60984	22942	42847	42909	66217	66217					0.012100613149868877
PVGFPHPAR	9	Unmodified	_PVGFPHPAR_					0	0	0			REV__nc|ENSG00000170345|P01100-3|FOS	REV__nc|ENSG00000170345|P01100-3|FOS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2704772949219	2	489.269419	976.524284	-0.39377	-0.00019266	2.0812	0.0010183	1.6874	0.00082559	489.270593923878	38.922	1.5173	38.922	38.433	39.951	0					145	41	5	0	0	0	0.36105	1	3325	3325		68.485	8.1907	1	53004000	+		60985	26458	42848	42910	66218	66218					0.035083305740727155
PVGFPHPAR	9	Unmodified	_PVGFPHPAR_					0	0	0			REV__nc|ENSG00000170345|P01100-3|FOS	REV__nc|ENSG00000170345|P01100-3|FOS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2709045410156	2	489.269419	976.524284	-1.1824	-0.00057849	3.2509	0.0015906	2.0685	0.0010121	489.27120220852095	39.189	1.8352	39.213	38.727	40.563	0.023727					150	50	5	0	0	0	0.36105	1	3316	3316		68.485	8.1907	1	46415000	+		60986	26458	42848	42910	66219	66219					0.035083305740727155
PVGFVEII	8	Unmodified	_PVGFVEII_					0	0	0			REV__ENSG00000139151|ENST00000266505|PLCZ1	REV__ENSG00000139151|ENST00000266505|PLCZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.2458190917969	2	437.257654	872.500755	-0.19678	-8.6045E-05	-2.7635	-0.0012084	-2.9603	-0.0012944	437.2561786007585	27.82	0.72138	27.902	27.608	28.329	0.081293					21	17	2	0	0	0	0.027866	1	1556	1556		29.842	16.066	1	77123	+		60987	23917	42849	42911	66220	66220					0.05940472016891363
PVGGPRAAGP	10	Unmodified	_PVGGPRAAGP_					0	0	0		ENST00000451590.5_1_11:534328-535422:-|nuORF	ENST00000451590.5_1_11:534328-535422:-|nuORF	ENST00000451590.5_1_11:534328-535422:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.5303649902344	2	439.745776	877.477	0.78312	0.00034437	-3.9803	-0.0017503	-3.1972	-0.001406	439.7415170750279	19.733	0.49563	19.533	19.255	19.751	-0.2001					11	9	2	0	0	0	0.03519	1	445	445		17.365	0	1	8754.6			60988	14523	42850	42912	66221	66221					0.033360513030856964
PVGHSYLF	8	Unmodified	_PVGHSYLF_					0	0	0			REV__nc|ENSG00000089225|Q99593-3|TBX5	REV__nc|ENSG00000089225|Q99593-3|TBX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2619934082031	2	460.237253	918.459953	-0.71339	-0.00032833	1.501	0.00069083	0.78763	0.0003625	460.23706282765477	28.461	1.4109	28.461	27.58	28.99	0					59	34	3	0	0	0	0.027866	1	1640	1640		28.254	1.4582	1	322010	+		60989	20849	42851	42913	66222	66222					-0.0025386930273043617
PVGILLLVV	9	Unmodified	_PVGILLLVV_					0	0	0		ENST00000415947.1_1_2:205410861-205912470:+|nuORF	ENST00000415947.1_1_2:205410861-205912470:+|nuORF	ENST00000415947.1_1_2:205410861-205912470:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.8203125	2	461.820421	921.62629	1.3703	0.00063285	-1.3411	-0.00061935	0.02923	1.3499E-05	461.81973154993875	97.514	0.66051	97.512	97.234	97.894	-0.0015335					31	14	3	0	0	0	0.99355	1	12384	12384		21.702	0	1	249180			60990	13890	42852	42914	66223	66223					0.16234183873120855
PVGKRVYR	8	Unmodified	_PVGKRVYR_					0	0	0			REV__ENSG00000139835|ENST00000375431|GRTP1	REV__ENSG00000139835|ENST00000375431|GRTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2515563964844	2	487.798343	973.582134	-0.62282	-0.00030381	0.5001	0.00024395	-0.12272	-5.9864E-05	487.7982973481148	30.023	0.94096	30.031	29.597	30.538	0.0086708					40	22	2	0	0	0	0.027866	1	1829	1829		21.702	14.967	1	118830	+		60991	23966	42853	42915	66224	66224					0.0942859249950061
PVGLSLTAS	9	Unmodified	_PVGLSLTAS_					0	0	0		nc|ENSG00000148942|Q1EHB4-2|SLC5A12;ENSG00000148942|ENST00000396005|SLC5A12	nc|ENSG00000148942|Q1EHB4-2|SLC5A12	nc|ENSG00000148942|Q1EHB4-2|SLC5A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	421.91656494140625	2	422.742368	843.470183	2.3043	0.00097411	-0.2585	-0.00010928	2.0458	0.00086483	422.7421783017849	19.741	0.52862	19.807	19.587	20.116	0.066195					17	10	2	0	0	0	0.024541	1	386	386		19.36	1.995	1	63743			60992	6058	42854	42916	66225	66225					0.042186936318557855
PVGNVANKP	9	Unmodified	_PVGNVANKP_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.25860595703125	2	448.253434	894.492316	0.13934	6.246E-05	0.692	0.00031019	0.83134	0.00037265	448.2534962169924	42.635	0.26185	42.661	42.529	42.79	0.026012					10	6	2	0	0	0	0.024412	1	3865	3865		31.955	0	1	214100			60993	4299	42855	42917	66226	66226					0.040849181002727164
PVGPDGPQGRI	11	Unmodified	_PVGPDGPQGRI_					0	0	0			REV__ENSG00000204262|ENST00000374866|COL5A2	REV__ENSG00000204262|ENST00000374866|COL5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.2677001953125	2	546.793455	1091.57236	-1.4999	-0.00082015	0.83026	0.00045398	-0.66967	-0.00036617	546.7939247622653	40.257	0.68335	40.28	40.013	40.696	0.023006					25	18	2	0	0	0	0.024747	1	3469	3469		47.657	8.4045	1	340980	+		60994	28580	42856	42918	66227	66227					0.030233597034794002
PVGPGGEQGSI	11	Unmodified	_PVGPGGEQGSI_					0	0	0		ENST00000409565.5_1_2:228190068-228195377:+|nuORF	ENST00000409565.5_1_2:228190068-228195377:+|nuORF	ENST00000409565.5_1_2:228190068-228195377:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.78515625	2	499.251089	996.487624	0.40836	0.00020388	-3.0298	-0.0015126	-2.6214	-0.0013087	499.24903159735936	47.221	0.59531	47.068	46.776	47.371	-0.153					22	15	2	0	0	0	0.024778	1	4714	4714		52.937	33.577	1	143360			60995	13782	42857	42919	66228	66228					-0.01076010833151031
PVGSDEYG	8	Unmodified	_PVGSDEYG_					0	0	0			REV__ENST00000507761.1_1_4:80148591-80148798:+|nuORF	REV__ENST00000507761.1_1_4:80148591-80148798:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.1758728027344	2	412.177058	822.339563	-1.4294	-0.00058918	-1.9709	-0.00081236	-3.4003	-0.0014015	412.1762961587461	91.863	2.0153	91.714	90.892	92.908	-0.1487					101	47	4	0	0	0	1.0572	1	11277	11277		28.254	2.8041	1	2106500	+		60996	34055	42858	42920	66229	66229					-0.07871322086998589
PVGTFRRSAAM	11	Unmodified	_PVGTFRRSAAM_					0	0	0			REV__ENST00000595595.1_1_10:75385822-75386008:+|nuORF	REV__ENST00000595595.1_1_10:75385822-75386008:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.8162841796875	2	596.816407	1191.61826	-1.3285	-0.00079289	1.4626	0.00087291	0.13409	8.0025E-05	596.8171074472955	34.379	1.0552	34.429	33.965	35.02	0.050255					78	26	4	0	0	0	1.0292	1	2492	2492		30.318	2.4355	1	2385800	+		60997	35785	42859	42921	66230	66230					0.03011681614043482
PVGYPHLL	8	Unmodified	_PVGYPHLL_					0	0	0			REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1	REV__nc|ENSG00000078328|Q9NWB1-4|RBFOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.7615661621094	2	448.255446	894.496338	-0.50261	-0.0002253	-3.711	-0.0016635	-4.2136	-0.0018888	448.2536303949852	25.934	0.68246	25.698	25.385	26.067	-0.23603					34	17	3	0	0	0	0.027866	1	1255	1255		24.504	17.311	1	707680	+		60998	36480	42860	42922	66231	66231					0.044870075940025345
PVHDRGPGQP	10	Unmodified	_PVHDRGPGQP_					0	0	0			REV__ENST00000541899.1_1_11:71816948-71817176:+|nuORF	REV__ENST00000541899.1_1_11:71816948-71817176:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2766723632812	2	530.270147	1058.52574	-0.50199	-0.00026619	3.0151	0.0015988	2.5131	0.0013326	530.2711105624944	49.01	0.31198	49.01	48.864	49.176	0					19	8	3	0	0	0	0.03519	1	5029	5029		47.657	13.485	1	119890	+		60999	34781	42861	42923	66232	66232					-0.0011808012779965793
PVIAKVGTA	9	Unmodified	_PVIAKVGTA_					0	0	0		ENSG00000181074|ENST00000641350|OR52N4;OR52N4|p.T139N|1|0.1|ENSG00000181074|chr11:5755156-5755156|C/A|missense_variant	ENSG00000181074|ENST00000641350|OR52N4	ENSG00000181074|ENST00000641350|OR52N4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7297668457031	2	428.268553	854.522553	-0.11746	-5.0303E-05	-0.3228	-0.00013825	-0.44026	-0.00018855	428.26768839184376	28.773	0.17062	28.622	28.486	28.656	-0.15023					5	3	2	0	0	0	0.024506	1	1686	1686		10.866	0	1	15628			61000	9022	42862	42924	66233	66233					0.0894727676546836
PVILCLSSI	9	Unmodified	_PVILCLSSI_					0	0	0		ENST00000590306.5_1_19:9529300-9529744:-|nuORF;ENST00000588933.5_1_19:9529293-9529744:-|nuORF	ENST00000590306.5_1_19:9529300-9529744:-|nuORF	ENST00000590306.5_1_19:9529300-9529744:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.75543212890625	2	472.777896	943.54124	-0.41879	-0.00019799	2.909	0.0013753	2.4902	0.0011773	472.7793204282283	39.406	0.5988	39.308	39.054	39.653	-0.098751					26	16	2	0	0	0	0.024183	1	3404	3404		31.955	0	1	734040			61001	17296	42863	42925	66234	66234					0.06721070345031421
PVILLQLEP	9	Unmodified	_PVILLQLEP_					0	0	0		ENST00000443723.1_1_13:51287057-51287189:-|nuORF	ENST00000443723.1_1_13:51287057-51287189:-|nuORF	ENST00000443723.1_1_13:51287057-51287189:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2909240722656	2	511.318243	1020.62193	-0.10016	-5.1212E-05	0.32753	0.00016747	0.22737	0.00011626	511.31820189566	71.409	0.90009	71.42	71.124	72.024	0.010735					54	23	3	0	0	0	0.024466	1	8590	8590		18.324	0.95945	1	1578600			61002	14405	42864	42926	66235	66235					0.11244674659565135
PVILMQLF	8	Unmodified	_PVILMQLF_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7878112792969	2	480.782982	959.55141	-1.1019	-0.00052976	0.60099	0.00028894	-0.50088	-0.00024081	480.78109612872686	22.368	0.80648	22.442	22.125	22.931	0.073954					23	16	2	0	0	0	0.027866	1	712	712		29.842	9.3597	1	53486			61003	5951	42865	42927	66236	66236					0.07001678070264461
PVILSHLRIS	10	Unmodified	_PVILSHLRIS_					0	0	0		ENSG00000163006|ENST00000295124|CCDC138;nc|ENSG00000163006|Q96M89-2|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.2684936523438	2	567.853316	1133.69208	-0.9282	-0.00052708	0.55106	0.00031292	-0.37713	-0.00021416	567.8535346458765	54.765	0.28497	54.765	54.623	54.908	0					17	7	3	0	0	0	0.03519	1	6028	6028		27.882	0	1	219530			61004	7024	42866	42928	66237	66237					0.1305797304803491
PVILTTVAL	9	Unmodified	_PVILTTVAL_					0	0	0			REV__ENST00000341550.8_1_12:6760514-6761456:-|nuORF	REV__ENST00000341550.8_1_12:6760514-6761456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7508850097656	2	463.799686	925.584819	-0.23124	-0.00010725	-2.4163	-0.0011207	-2.6475	-0.0012279	463.7984155089555	41.773	0.96626	41.641	41.352	42.319	-0.13219					65	27	4	0	0	0	0.024466	1	3884	3884		33.516	22.005	1	2466000	+		61005	30636	42867	42929	66238	66238					0.11905003113804469
PVINVIQTV	9	Unmodified	_PVINVIQTV_					0	0	0			REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF	REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.289794921875	2	491.800217	981.585882	-0.17342	-8.5288E-05	-0.79128	-0.00038915	-0.9647	-0.00047444	491.80000479189744	50.954	0.88202	50.805	50.162	51.044	-0.14916					45	25	3	0	0	0	0.024495	1	5248	5248		26.693	5.746	1	706730	+		61006	34332	42868	42930	66239	66239					0.09435217482689495
PVINVIQTV	9	Unmodified	_PVINVIQTV_					0	0	0			REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF	REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.800217	981.585882	-0.0054163	-2.6637E-06	-1.3939	-0.00068552	-1.3993	-0.00068818	491.79950338096296	50.771	0.58846	50.771	50.479	51.067	0	0.01993	-0.00080708	NaN	26.693	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1399200	+		61007	34332	42868	42930							0.09435217482689495
PVINVIQTV	9	Unmodified	_PVINVIQTV_					0	0	0			REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF	REV__ENST00000522126.5_1_5:141021104-141024617:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.800217	981.585882	-0.53543	-0.00026332	0.38124	0.00018749	-0.15419	-7.5828E-05	491.8001731628591	50.597	0.5892	50.678	50.444	51.033	0.08099	-0.073018	0.00093895	NaN	26.693	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644150	+		61008	34332	42868	42930							0.09435217482689495
PVIPMANKF	9	Unmodified	_PVIPMANKF_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1;ENST00000505313.1_1_5:109190900-109200853:+|nuORF	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3263854980469	2	508.783513	1015.55247	0.11552	5.8776E-05	2.3002	0.0011703	2.4158	0.0012291	508.7851540076258	56.816	0.49538	56.614	56.288	56.783	-0.20209					17	12	2	0	0	0	0.024325	1	6148	6148		50.025	25.822	1	600900			61009	3248	42869	42931	66240	66240					0.045318924391494875
PVIPMANKF	9	Unmodified	_PVIPMANKF_					0	0	0		ENSG00000112893|ENST00000261483|MAN2A1;ENST00000505313.1_1_5:109190900-109200853:+|nuORF	ENSG00000112893|ENST00000261483|MAN2A1	ENSG00000112893|ENST00000261483|MAN2A1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	508.783513	1015.55247	-0.69234	-0.00035225	3.423	0.0017415	2.7306	0.0013893	508.7851540244666	56.708	0.56376	56.543	56.313	56.876	-0.16431	-0.026832	0.00014972	NaN	50.025	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2852200			61010	3248	42869	42931							0.045318924391494875
PVKELVTVTG	10	Unmodified	_PVKELVTVTG_					0	0	0			REV__ENSG00000176697|ENST00000356660|BDNF	REV__ENSG00000176697|ENST00000356660|BDNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8125	2	521.810782	1041.60701	-0.20542	-0.00010719	3.996	0.0020852	3.7906	0.001978	521.8128611872344	41.5	0.74377	41.377	40.943	41.687	-0.12318					72	20	4	0	0	0	1.1307	1	3715	3715		26.693	1.1189	1	15953000	+		61011	27040	42870	42932	66241	66241					0.08787182791570558
PVKELVTVTG	10	Unmodified	_PVKELVTVTG_					0	0	0			REV__ENSG00000176697|ENST00000356660|BDNF	REV__ENSG00000176697|ENST00000356660|BDNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.812744140625	2	521.810782	1041.60701	-0.13268	-6.9233E-05	3.9032	0.0020368	3.7706	0.0019675	521.8128118762803	41.489	1.2789	41.512	41.111	42.39	0.023006					85	36	4	0	0	0	1.1307	1	3665	3665		26.693	1.1189	1	16691000	+		61012	27040	42870	42932	66242	66242					0.08787182791570558
PVKGHCLL	8	Unmodified	_PVKGHCLL_					0	0	0		ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-3|LONRF3	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	ENST00000472173.5_1_X:118112321-118146861:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.75164794921875	2	433.749473	865.484393	0.50306	0.0002182	4.2122	0.001827	4.7153	0.0020452	433.7512119293158	19.727	1.5901	19.727	18.972	20.562	0					82	32	4	0	0	0	0.9224	1	451	451		49.211	6.7363	1	1278400			61013	14985	42871	42933	66243	66243					0.04627067579156119
PVKKGVPM	8	Unmodified	_PVKKGVPM_					0	0	0		ENSG00000061794|ENST00000081029|MRPS35;MRPS35|p.K294Sfs*23|1|0.23|ENSG00000061794|chr12:27755355-27755355|A/-|frameshift_variant;nc|ENSG00000061794|P82673-2|MRPS35	ENSG00000061794|ENST00000081029|MRPS35	ENSG00000061794|ENST00000081029|MRPS35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7296447753906	2	428.259674	854.504795	-0.86531	-0.00037058	-2.1732	-0.00093069	-3.0385	-0.0013013	428.26041236305605	29.083	0.21532	28.838	28.709	28.924	-0.24523					6	4	2	0	0	0	0.027866	1	1753	1753		13.775	4.3048	1	13382			61014	1246	42872	42934	66244	66244					0.07172238238979389
PVKKRIHR	8	Unmodified	_PVKKRIHR_					0	0	0			REV__ENSG00000186496|ENST00000589332|ZNF396	REV__ENSG00000186496|ENST00000589332|ZNF396	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3052978515625	2	517.34071	1032.66687	-0.21938	-0.00011349	-1.9627	-0.0010154	-2.1821	-0.0011289	517.3395120193928	60.162	0.33493	59.913	59.723	60.058	-0.24842					13	8	3	0	0	0	0.027866	1	6689	6689		8.8223	7.3575	1	153770	+		61015	27861	42873	42935	66245	66245					0.1518396303611098
PVKLYLGGT	9	Unmodified	_PVKLYLGGT_					0	0	0			REV__ENSG00000111358|ENST00000543341|GTF2H3	REV__ENSG00000111358|ENST00000543341|GTF2H3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.764404296875	2	474.28166	946.548768	0.73659	0.00034935	-0.39955	-0.0001895	0.33705	0.00015986	474.28138087093964	91.63	0.83778	91.64	91.276	92.114	0.0094147					32	19	3	0	0	0	0.024487	1	11594	11594		40.573	23.208	1	388520	+		61016	21912	42874	42936	66246	66246					0.07335545936962262
PVKNEKII	8	Unmodified	_PVKNEKII_					0	0	0			REV__ENST00000570136.5_1_16:2611779-2611935:+|nuORF	REV__ENST00000570136.5_1_16:2611779-2611935:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.29241943359375	2	470.794935	939.575317	-0.40184	-0.00018918	0.7951	0.00037433	0.39326	0.00018515	470.7950491518656	53.382	0.99464	53.235	52.645	53.639	-0.14723					50	26	3	0	0	0	0.027866	1	5663	5663		38.806	0	1	1646600	+		61017	24055	42875	42937	66247	66247					0.10311234828293436
PVKNEKII	8	Unmodified	_PVKNEKII_					0	0	0			REV__ENST00000570136.5_1_16:2611779-2611935:+|nuORF	REV__ENST00000570136.5_1_16:2611779-2611935:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2933044433594	2	470.794935	939.575317	0.20108	9.4668E-05	0.13442	6.3283E-05	0.3355	0.00015795	470.79472021364245	53.104	0.95062	53.199	52.714	53.664	0.095669					49	25	3	0	0	0	0.027866	1	5593	5593		33.516	0	1	1523600	+		61018	24055	42875	42937	66248	66248					0.10311234828293436
PVKPIVKTV	9	Unmodified	_PVKPIVKTV_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.25323486328125	2	490.828778	979.643003	-0.091801	-4.5058E-05	-1.2342	-0.00060579	-1.326	-0.00065085	490.82800594857866	42.94	0.7259	42.801	42.558	43.284	-0.13929					27	19	2	0	0	0	0.024539	1	3973	3973		27.882	18.177	1	145940	+		61019	19890	42876	42938	66249	66249					0.1523668475907698
PVKPIVKTV	9	Unmodified	_PVKPIVKTV_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.82989501953125	2	490.828778	979.643003	-0.48882	-0.00023993	1.4526	0.00071298	0.96378	0.00047305	490.82929918316074	66.446	0.63781	66.476	66.267	66.905	0.030106					31	18	2	0	0	0	0.87448	1	7843	7843		34.173	3.6689	1	1773900	+		61020	19890	42876	42938	66250	66250					0.1523668475907698
PVKPIVKTV	9	Unmodified	_PVKPIVKTV_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2530212402344	2	490.828778	979.643003	0.074684	3.6657E-05	-1.1556	-0.00056722	-1.0809	-0.00053056	490.8281851528906	42.89	0.80352	42.916	42.605	43.408	0.026012					29	21	2	0	0	0	0.024487	1	3971	3971		24.203	8.5609	1	138580	+		61021	19890	42876	42938	66251	66251					0.1523668475907698
PVKRRLLPM	9	Unmodified	_PVKRRLLPM_					0	0	0		ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-2|WHRN	ENSG00000095397|ENST00000362057|WHRN	ENSG00000095397|ENST00000362057|WHRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.3532104492188	2	555.352428	1108.6903	0.80031	0.00044446	1.3509	0.00075021	2.1512	0.0011947	555.3530192204877	99.747	0.68683	99.622	99.234	99.921	-0.12458					49	18	4	0	0	0	0.97516	1	12365	12365		25.45	4.5032	1	835110			61022	2026	42877	42939	66252	66252					0.14030640758414847
PVKWLHLG	8	Unmodified	_PVKWLHLG_					0	0	0			REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2824401855469	2	475.284537	948.554522	-0.49485	-0.0002352	-3.6762	-0.0017472	-4.171	-0.0019824	475.28255981142814	34.925	0.85781	34.738	34.402	35.26	-0.18675					53	21	4	0	0	0	0.85409	1	2596	2596		54.765	6.8491	1	2386300	+		61023	36728	42878	42940	66253	66253					0.07818689239275045
PVLAIVEVEV	10	Unmodified	_PVLAIVEVEV_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.774658203125	2	534.320983	1066.62741	-0.27997	-0.00014959	1.1255	0.00060136	0.8455	0.00045177	534.3213367797631	50.256	0.42617	50.337	50.117	50.543	0.080994					22	12	2	0	0	0	0.03519	1	5216	5216		21.96	0	1	251440			61024	1633	42879	42941	66254	66254					0.09676353451368414
PVLAKTPR	8	Unmodified	_PVLAKTPR_					0	0	0			REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT	REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2656555175781	2	441.281995	880.549437	0.064597	2.8505E-05	1.7253	0.00076136	1.7899	0.00078986	441.2818370451338	39.237	0.28094	39.237	39.076	39.357	0					13	7	3	0	0	0	0.027866	1	3349	3349		35.618	12.576	1	91300	+		61025	23085	42880	42942	66255	66255					0.10438385376653514
PVLALILNIL	10	Unmodified	_PVLALILNIL_					0	0	0		nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000100031|P19440-2|GGT1;ENSG00000100031|ENST00000400382|GGT1;nc|ENSG00000133475|P36268-2|GGT2P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P	nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000133475|P36268-2|GGT2P	nc|ENSG00000197421|A6NGU5|GGT3P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8190307617188	2	539.86536	1077.71617	-0.34333	-0.00018535	-0.54537	-0.00029442	-0.8887	-0.00047978	539.8645897414235	74.341	0.25771	74.158	74.094	74.351	-0.18279					6	5	2	0	0	0	0.03519	1	8750	8750		18.324	0	1	121550			61026	18635;18280	42881	42943	66256	66256					0.18041813481704594
PVLARTRL	8	Unmodified	_PVLARTRL_					0	0	0			REV__ENST00000439994.5_1_11:62370229-62370646:-|nuORF	REV__ENST00000439994.5_1_11:62370229-62370646:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7608642578125	2	463.300719	924.586885	0.16131	7.4734E-05	0.02342	1.0851E-05	0.18473	8.5585E-05	463.30050107525875	48.104	1.3171	48.17	47.808	49.125	0.066795					67	36	3	0	0	0	0.027866	1	4957	4957		57.811	3.0466	1	3945800	+		61027	31674	42882	42944	66257	66257					0.12157476642266829
PVLDLVDL	8	Unmodified	_PVLDLVDL_					0	0	0			REV__ENST00000545897.5_1_1:161199562-161199694:+|nuORF	REV__ENST00000545897.5_1_1:161199562-161199694:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.25616455078125	2	442.260394	882.506234	-0.084814	-3.751E-05	-1.0727	-0.00047443	-1.1576	-0.00051194	442.2599180447079	82.856	0.77707	82.716	82.216	82.993	-0.14014					24	17	2	0	0	0	0.027866	1	9916	9916		14.664	0	1	97899	+		61028	34831	42883	42945	66258	66258					0.06028150808708688
PVLEARREK	9	Unmodified	_PVLEARREK_					0	0	0		ENST00000487017.5_1_3:48603947-48604380:-|nuORF	ENST00000487017.5_1_3:48603947-48604380:-|nuORF	ENST00000487017.5_1_3:48603947-48604380:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2962646484375	2	549.324922	1096.63529	-1.1725	-0.00064406	1.2259	0.00067342	0.05345	2.9361E-05	549.3253620349698	21.286	0.48968	21.286	21.048	21.537	0					16	9	2	0	0	0	0.024374	1	637	637		58.782	36.202	1	59135			61029	15357	42884	42946	66259	66259					0.0908392549151813
PVLEARREK	9	Unmodified	_PVLEARREK_					0	0	0		ENST00000487017.5_1_3:48603947-48604380:-|nuORF	ENST00000487017.5_1_3:48603947-48604380:-|nuORF	ENST00000487017.5_1_3:48603947-48604380:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.324922	1096.63529	-0.48966	-0.00026898	0.47285	0.00025975	-0.01681	-9.234E-06	549.3250081204868	21.229	0.5378	21.301	21.008	21.546	0.071487	0.04429	-0.00045394	NaN	58.782	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58281			61030	15357	42884	42946							0.0908392549151813
PVLEKERVK	9	Unmodified	_PVLEKERVK_					0	0	0		ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2962646484375	2	549.337498	1096.66044	-1.1187	-0.00061452	-0.97379	-0.00053494	-2.0924	-0.0011495	549.3368994495517	21.4	0.53263	21.4	21.097	21.63	0					18	10	2	0	0	0	0.024457	1	637	637		45.952	0	1	63346			61031	13396	42885	42947	66260	66260					0.1159798029407284
PVLEKERVK	9	Unmodified	_PVLEKERVK_					0	0	0		ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.337498	1096.66044	-0.68591	-0.0003768	-1.6878	-0.00092718	-2.3737	-0.001304	549.3364308060036	21.355	0.62513	21.426	21.155	21.781	0.071487	0.0095586	0.00068252	NaN	45.952	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82118			61032	13396	42885	42947							0.1159798029407284
PVLEKERVK	9	Unmodified	_PVLEKERVK_					0	0	0		ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.337498	1096.66044	0.19605	0.0001077	-2.8711	-0.0015772	-2.6751	-0.0014695	549.3358447742294	21.503	0.62137	21.326	21.113	21.735	-0.17721	-0.090357	-0.00061755	NaN	45.952	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218980			61033	13396	42885	42947							0.1159798029407284
PVLEKERVK	9	Unmodified	_PVLEKERVK_					0	0	0		ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.337498	1096.66044	-0.18208	-0.00010002	-2.5197	-0.0013842	-2.7018	-0.0014842	549.335961571171	21.726	0.57793	21.535	21.275	21.853	-0.19072	0.11829	-0.00023148	NaN	45.952	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168200			61034	13396	42885	42947							0.1159798029407284
PVLEKERVK	9	Unmodified	_PVLEKERVK_					0	0	0		ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	ENST00000391835.1_1_19:50380463-50380886:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.337498	1096.66044	-1.2449	-0.00068386	-1.5393	-0.00084561	-2.7842	-0.0015295	549.3365518202405	21.647	0.58127	21.434	21.216	21.798	-0.2128	0.017485	0.00084567	NaN	45.952	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226680			61035	13396	42885	42947							0.1159798029407284
PVLGTRRA	8	Unmodified	_PVLGTRRA_					0	0	0		ENST00000278071.6_1_10:106073930-106074131:-|nuORF	ENST00000278071.6_1_10:106073930-106074131:-|nuORF	ENST00000278071.6_1_10:106073930-106074131:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7801818847656	2	435.269419	868.524284	-0.60853	-0.00026488	0.59267	0.00025797	-0.015867	-6.9063E-06	435.26965245307366	38.671	0.46723	38.45	38.221	38.688	-0.22149					19	11	2	0	0	0	0.027866	1	3178	3178		23.042	0	1	69327			61036	11698	42886	42948	66261	66261					0.08476330574080748
PVLHSWLL	8	Unmodified	_PVLHSWLL_					0	0	0			REV__ENST00000598497.1_1_19:58601666-58601705:-|nuORF	REV__ENST00000598497.1_1_19:58601666-58601705:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7841796875	2	482.78437	963.554188	0.13616	6.5735E-05	-0.063138	-3.0482E-05	0.07302	3.5253E-05	482.78416341419427	72.649	1.07	72.649	72.292	73.362	0					76	26	4	0	0	0	0.9224	1	8832	8832		49.211	4.6797	1	1791300	+		61037	35821	42887	42949	66262	66262					0.07095269519413705
PVLIGIGGSL	10	Unmodified	_PVLIGIGGSL_					0	0	0			REV__ENSG00000189091|ENST00000302516|SF3B3	REV__ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7609558105469	2	463.289485	924.564418	-0.15276	-7.0774E-05	-0.039836	-1.8455E-05	-0.1926	-8.923E-05	463.2892567270215	49.323	0.54073	49.17	48.864	49.405	-0.15277					28	14	3	0	0	0	0.03519	1	5043	5043		37.159	1.5408	1	559290	+		61038	28096	42888	42950	66263	66263					0.09911832453997249
PVLIRVGKV	9	Unmodified	_PVLIRVGKV_					0	0	0			REV__BLZF1|p.A78G|1|0.26|ENSG00000117475|chr1:169376744-169376744|C/G|missense_variant	REV__BLZF1|p.A78G|1|0.26|ENSG00000117475|chr1:169376744-169376744|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.79547119140625	2	490.834394	979.654236	-0.42145	-0.00020686	-0.61076	-0.00029978	-1.0322	-0.00050664	490.83383963220854	48.371	0.30788	48.371	48.174	48.482	0					11	8	2	0	0	0	0.024541	1	4939	4939		18.324	6.8134	1	89723	+		61039	19211	42889	42951	66264	66264					0.16359506853234507
PVLLDQLNP	9	Unmodified	_PVLLDQLNP_					0	0	0		ENSG00000125861|ENST00000290417|GFRA4;nc|ENSG00000125861|Q9GZZ7|GFRA4	ENSG00000125861|ENST00000290417|GFRA4	ENSG00000125861|ENST00000290417|GFRA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7879638671875	2	504.78985	1007.56515	0.22578	0.00011397	-3.3819	-0.0017072	-3.1562	-0.0015932	504.78801312997444	19.662	1.0209	19.501	19.084	20.105	-0.16079					40	20	3	0	0	0	0.72494	1	455	455		44.377	12.847	1	788150			61040	4153	42890	42952	66265	66265					0.06166627103027622
PVLLDQLNP	9	Unmodified	_PVLLDQLNP_					0	0	0		ENSG00000125861|ENST00000290417|GFRA4;nc|ENSG00000125861|Q9GZZ7|GFRA4	ENSG00000125861|ENST00000290417|GFRA4	ENSG00000125861|ENST00000290417|GFRA4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	504.78985	1007.56515	0.82619	0.00041705	-3.9149	-0.0019762	-3.0887	-0.0015591	504.78778619347685	19.779	0.68029	19.579	19.355	20.035	-0.2001	0.052774	-0.00017523	NaN	44.377	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790300			61041	4153	42890	42952							0.06166627103027622
PVLLFQYSEKQ	11	Unmodified	_PVLLFQYSEKQ_					0	0	0			REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|49	REV__chr2:113477199-113482177|353|19.55|0.21|6.52|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|49	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24212646484375	3	451.246727	1350.71835	0.40878	0.00018446	-3.014	-0.0013601	-2.6053	-0.0011756	451.2450563755106	53.721	0.21702	53.721	53.655	53.872	0					6	5	2	0	0	0	0.024851	1	5827	5827		9.6461	2.2464	1	38484	+		61042	19402	42891	42953	66266	66266					0.05702197428854561
PVLLSKDI	8	Unmodified	_PVLLSKDI_					0	0	0		ENSG00000149428|ENST00000617285|HYOU1	ENSG00000149428|ENST00000617285|HYOU1	ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.25616455078125	2	442.776211	883.537869	-0.50438	-0.00022333	0.65232	0.00028883	0.14794	6.5502E-05	442.7763441232544	82.265	0.73837	82.125	81.87	82.608	-0.14014					28	16	3	0	0	0	0.027866	1	9916	9916		25.45	0	1	190160			61043	6087	42892	42954	66267	66267					0.09144143562662066
PVLNLNKPN	9	Unmodified	_PVLNLNKPN_					0	0	0			REV__JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant	REV__JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.6988830566406	2	504.795466	1007.57638	-0.64286	-0.00032451	0.43768	0.00022094	-0.20518	-0.00010357	504.7955362136661	26.768	0.37237	26.532	26.378	26.75	-0.23603					14	8	2	0	0	0	0.024436	1	1416	1416		23.042	4.7181	1	190760	+		61044	36164	42893	42955	66268	66268					0.07289449197173781
PVLPGPPKLP	10	Unmodified	_PVLPGPPKLP_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.759033203125	2	507.820953	1013.62735	-0.28086	-0.00014263	-3.325	-0.0016885	-3.6059	-0.0018312	507.818990241353	24.232	0.46752	24.057	23.829	24.296	-0.17484					30	10	5	0	0	0	0.03519	1	1026	1026		23.042	10.836	1	255320	+		61045	36503;20881	42894	42956	66269	66269					0.12108398242025942
PVLPGRHGGL	10	Unmodified	_PVLPGRHGGL_					0	0	0		ENST00000478597.5_1_9:140007734-140009165:-|nuORF	ENST00000478597.5_1_9:140007734-140009165:-|nuORF	ENST00000478597.5_1_9:140007734-140009165:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.797119140625	2	501.795801	1001.57705	-0.62262	-0.00031243	3.3425	0.0016772	2.7199	0.0013648	501.7973681639872	38.545	0.88351	38.462	38.116	38.999	-0.082516					60	23	4	0	0	0	1.0541	1	3249	3249		38.806	0	1	5114600			61046	15150	42895	42957	66270	66270					0.07632288636898465
PVLPGRHGGL	10	Unmodified	_PVLPGRHGGL_					0	0	0		ENST00000478597.5_1_9:140007734-140009165:-|nuORF	ENST00000478597.5_1_9:140007734-140009165:-|nuORF	ENST00000478597.5_1_9:140007734-140009165:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7972106933594	2	501.795801	1001.57705	-1.2026	-0.00060344	3.9048	0.0019594	2.7023	0.001356	501.7976510507207	38.787	0.92343	38.814	38.429	39.353	0.027275					64	24	5	0	0	0	1.0408	1	3234	3234		40.573	7.057	1	5430000			61047	15150	42895	42957	66271	66271					0.07632288636898465
PVLPLVVF	8	Unmodified	_PVLPLVVF_					0	0	0		nc|ENSG00000196503|Q6T311-2|ARL9;nc|ENSG00000196503|Q6T311|ARL9;ENSG00000196503|ENST00000640821|ARL9	nc|ENSG00000196503|Q6T311-2|ARL9	nc|ENSG00000196503|Q6T311-2|ARL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.2314453125	2	442.286214	882.557876	-0.051561	-2.2805E-05	-4.3103	-0.0019064	-4.3619	-0.0019292	442.28420373941736	46.928	0.56237	46.658	46.415	46.977	-0.26939					25	15	2	0	0	0	0.027866	1	4584	4584		33.493	8.989	1	584690			61048	9883	42896	42958	66272	66272					0.11189939293285533
PVLRDIQHA	9	Unmodified	_PVLRDIQHA_					0	0	0		ENST00000566838.2_3_16:82131651-82132038:+|nuORF;ENSG00000086696|ENST00000199936|HSD17B2	ENST00000566838.2_3_16:82131651-82132038:+|nuORF	ENST00000566838.2_3_16:82131651-82132038:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7979736328125	2	524.79854	1047.58253	-0.7354	-0.00038594	0.6497	0.00034096	-0.085697	-4.4973E-05	524.7987584117789	40.015	0.85435	40.038	39.741	40.595	0.023006					61	23	4	0	0	0	0.70186	1	3428	3428		45.952	0	1	2008400			61049	1821	42897	42959	66273	66273					0.06063967428713113
PVLRIICLWPC	11	Unmodified	_PVLRIICLWPC_					0	0	0		ENST00000468865.6_1_1:43829752-43830910:-|nuORF	ENST00000468865.6_1_1:43829752-43830910:-|nuORF	ENST00000468865.6_1_1:43829752-43830910:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.24627685546875	3	438.247128	1311.71956	-0.5257	-0.00023039	-0.27385	-0.00012001	-0.79955	-0.0003504	438.2468703737847	28.067	2.8505	28.067	27.286	30.137	0					179	71	5	0	0	0	1.0233	1	1586	1586		31.634	2.0835	1	2868100			61050	14889	42898	42960	66274	66274					0.07616416992414088
PVLRKHLK	8	Unmodified	_PVLRKHLK_					0	0	0		ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7377624511719	2	495.832186	989.649819	1.3959	0.00069211	3.8071	0.0018877	5.203	0.0025798	495.83391374360383	36.326	0.75714	36.128	35.979	36.736	-0.19829					32	18	2	0	0	0	0.027866	1	2848	2848		24.203	0	1	176640			61051	8149	42899	42961	66275	66275					0.15458042430304886
PVLRNRCT	8	Unmodified	_PVLRNRCT_					0	0	0			REV__ENSG00000143013|ENST00000370544|LMO4	REV__ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2779235839844	2	479.766186	957.517819	0.12943	6.2096E-05	2.5762	0.001236	2.7057	0.0012981	479.7675870361517	82.68	0.39139	82.499	82.331	82.722	-0.18079					10	8	2	0	0	0	0.027866	1	9960	9960		31.955	10.253	1	54750	+		61052	24191	42900	42962	66276	66276					0.037360693510549936
PVLRPLPGL	9	Unmodified	_PVLRPLPGL_					0	0	0			REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.3130187988281	2	481.313295	960.612037	0.14193	6.8313E-05	-0.3819	-0.00018382	-0.23997	-0.0001155	481.3129679250778	68.529	0.98985	68.529	67.987	68.977	0					60	25	3	0	0	0	0.88411	1	8227	8227		33.516	1.5607	1	1651900	+		61053	29483	42901	42963	66277	66277					0.130155314448416
PVLRQVEGKNP	11	Unmodified	_PVLRQVEGKNP_					0	0	0		ENST00000489378.5_1_7:141438966-141445458:+|nuORF;ENSG00000106028|ENST00000265304|SSBP1	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.21905517578125	3	412.906816	1235.69862	-1.1459	-0.00047315	4.155	0.0017156	3.0091	0.0012425	412.90859455414187	40.645	0.76305	40.415	40.046	40.809	-0.23029					39	20	3	0	0	0	0.024738	1	3580	3580		31.068	10.036	1	604430			61054	15407	42902	42964	66278	66278					0.0901986620876869
PVLRQVEGKNP	11	Unmodified	_PVLRQVEGKNP_					0	0	0		ENST00000489378.5_1_7:141438966-141445458:+|nuORF;ENSG00000106028|ENST00000265304|SSBP1	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	412.906816	1235.69862	1.0424	0.00043043	-0.78635	-0.00032469	0.25609	0.00010574	412.906505618078	40.132	0.6381	40.132	39.843	40.481	0	-0.13479	-0.0035331	NaN	14.779	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156700			61055	15407	42902	42964							0.0901986620876869
PVLRQVEGKNP	11	Unmodified	_PVLRQVEGKNP_					0	0	0		ENST00000489378.5_1_7:141438966-141445458:+|nuORF;ENSG00000106028|ENST00000265304|SSBP1	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	412.906816	1235.69862	0.42697	0.0001763	0.12896	5.325E-05	0.55594	0.00022955	412.9068091994826	40.212	0.44257	40.099	39.94	40.382	-0.11223	-0.1668	-0.0023992	NaN	14.779	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124530			61056	15407	42902	42964							0.0901986620876869
PVLRQVEGKNP	11	Unmodified	_PVLRQVEGKNP_					0	0	0		ENST00000489378.5_1_7:141438966-141445458:+|nuORF;ENSG00000106028|ENST00000265304|SSBP1	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	412.906816	1235.69862	-0.39106	-0.00016147	1.0922	0.00045099	0.70116	0.00028951	412.90707628270695	40.388	0.46606	40.411	40.162	40.629	0.023006	0.14482	-0.001206	NaN	14.779	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254490			61057	15407	42902	42964							0.0901986620876869
PVLRQVEGKNP	11	Unmodified	_PVLRQVEGKNP_					0	0	0		ENST00000489378.5_1_7:141438966-141445458:+|nuORF;ENSG00000106028|ENST00000265304|SSBP1	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	412.906816	1235.69862	-0.15723	-6.4923E-05	3.6353	0.0015011	3.4781	0.0014361	412.9081932635599	40.542	0.5426	40.317	40.004	40.547	-0.225	0.050514	0.0019442	NaN	14.779	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	690620			61058	15407	42902	42964							0.0901986620876869
PVLSDVAKI	9	Unmodified	_PVLSDVAKI_					0	0	0			REV__nc|ENSG00000152234|P25705-3|ATP5F1A	REV__nc|ENSG00000152234|P25705-3|ATP5F1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.28570556640625	2	471.286943	940.559333	-0.46057	-0.00021706	-2.4798	-0.0011687	-2.9404	-0.0013858	471.28566195482233	22.46	0.56901	22.534	22.268	22.837	0.073954					18	11	2	0	0	0	0.80658	1	750	750		38.806	1.647	1	254060	+		61059	24825	42903	42965	66279	66279					0.0866752859137705
PVLSQFLEN	9	Unmodified	_PVLSQFLEN_					0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	523.779482	1045.54441	0.61979	0.00032463	2.8588	0.0014974	3.4785	0.001822	523.7813052532637	87.198	0.4181	87.062	86.802	87.22	-0.13613					12	9	2	0	0	0	0.024209	1	10575	10575		56.721	10.769	1	84996	+		61060	22546	42904	42966	66280	66280					0.023460367233838042
PVLSSAPLL	9	Unmodified	_PVLSSAPLL_					0	0	0			REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.2584228515625	2	448.776211	895.537869	0.19606	8.7986E-05	0.22068	9.9036E-05	0.41674	0.00018702	448.7760705285304	86.846	0.55372	86.659	86.341	86.895	-0.18696					20	12	2	0	0	0	0.024466	1	10504	10504		12.207	0	1	127310	+		61061	31612	42905	42967	66281	66281					0.08592143562668753
PVLTHDPPA	9	Unmodified	_PVLTHDPPA_					0	0	0			REV__ENST00000439838.5_3_22:30823383-30824714:+|nuORF	REV__ENST00000439838.5_3_22:30823383-30824714:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.27178955078125	2	473.753267	945.491981	0.22668	0.00010739	0.49275	0.00023344	0.71944	0.00034084	473.75320269201774	41.035	0.45951	41.058	40.864	41.324	0.023006					20	12	2	0	0	0	0.024517	1	3644	3644		7.6903	0	1	261960	+		61062	32515	42906	42968	66282	66282					0.017054983804200674
PVLTRGLS	8	Unmodified	_PVLTRGLS_					0	0	0		ENST00000439875.1_1_9:115871640-115872087:-|nuORF	ENST00000439875.1_1_9:115871640-115872087:-|nuORF	ENST00000439875.1_1_9:115871640-115872087:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.9166564941406	2	421.758352	841.502152	-0.12771	-5.3864E-05	0.34783	0.0001467	0.22012	9.2838E-05	421.75847290880284	19.482	0.39264	19.364	19.151	19.543	-0.11872					13	7	2	0	0	0	0.027866	1	393	393		8.2313	0	1	207870			61063	14340	42907	42969	66283	66283					0.0750610610567719
PVLVKQEL	8	Unmodified	_PVLVKQEL_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7608642578125	2	463.289485	924.564418	-0.5792	-0.00026834	0.48587	0.0002251	-0.093336	-4.3242E-05	463.28942451913207	49.03	0.54539	49.104	48.807	49.352	0.074196					30	14	3	0	0	0	0.027866	1	4957	4957		60.294	0	1	505060			61064	15459	42908	42970	66284	66284					0.09911832453997249
PVLVLGNKT	9	Unmodified	_PVLVLGNKT_					0	0	0		ARL8B|p.R132T|1|0.09|ENSG00000134108|chr3:5174039-5174039|G/C|missense_variant	ARL8B|p.R132T|1|0.09|ENSG00000134108|chr3:5174039-5174039|G/C|missense_variant	ARL8B|p.R132T|1|0.09|ENSG00000134108|chr3:5174039-5174039|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2757263183594	2	470.794935	939.575317	-0.77864	-0.00036658	-0.26126	-0.000123	-1.0399	-0.00048958	470.79487684792775	49.484	0.33663	49.558	49.279	49.615	0.074196					10	8	2	0	0	0	0.024523	1	5030	5030		10.265	0	1	199750			61065	130	42909	42971	66285	66285					0.10311234828293436
PVMGPRGAK	9	Unmodified	_PVMGPRGAK_					0	0	0			REV__ENST00000306773.4_1_17:78443920-78443980:-|nuORF	REV__ENST00000306773.4_1_17:78443920-78443980:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.750732421875	2	456.75783	911.501106	-0.31471	-0.00014375	0.07357	3.3604E-05	-0.24114	-0.00011014	456.7578507989467	30.565	0.53876	30.574	30.289	30.828	0.0086708					20	12	2	0	0	0	0.024436	1	1947	1947		30.504	10.022	1	104320	+		61066	30125	42910	42972	66286	66286					0.04181568465105556
PVMNCYQT	8	Unmodified	_PVMNCYQT_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.29290771484375	2	478.204238	954.393924	-0.32101	-0.00015351	3.2072	0.0015337	2.8862	0.0013802	478.20578625112375	51.642	0.44781	51.494	51.228	51.676	-0.14735					15	12	2	0	0	0	0.027866	1	5453	5453		20.482	0	1	127730			61067	5269	42911	42973	66287	66287					-0.0850976953144027
PVMPAQNKVP	10	Unmodified	_PVMPAQNKVP_					0	0	0			REV__ENSG00000171533|ENST00000304771|MAP6	REV__ENSG00000171533|ENST00000304771|MAP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8316650390625	2	540.797152	1079.57975	-0.36366	-0.00019667	0.40392	0.00021844	0.040261	2.1773E-05	540.7982631578157	75.512	0.13946	75.522	75.47	75.609	0.010376					5	3	2	0	0	0	0.03519	1	9210	9210		55.504	28.811	1	231390	+		61068	26579	42912	42974	66288	66288					0.04314375979538454
PVMYTYDEYKK	11	Unmodified	_PVMYTYDEYKK_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2938537597656	3	479.563728	1435.66935	2.2957	0.0011009	-2.0239	-0.00097059	0.27175	0.00013032	479.5626422954211	24.563	0.34921	24.382	24.198	24.547	-0.18089					11	7	2	0	0	0	0.024856	1	1032	1032		13.508	0	1	47664			61069	5769	42913	42975	66289	66289					-0.0310545892243681
PVMYTYDEYKK	11	Unmodified	_PVMYTYDEYKK_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	479.563728	1435.66935	0.12355	5.9251E-05	-2.2285	-0.0010687	-2.105	-0.0010095	479.5633464995384	24.759	0.38335	24.544	24.336	24.72	-0.2151	0.095893	-0.0014367	NaN	17.167	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96332			61070	5769	42913	42975							-0.0310545892243681
PVMYTYDEYKK	11	Unmodified	_PVMYTYDEYKK_					0	0	0		ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	ENSG00000144810|ENST00000652472|COL8A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	479.563728	1435.66935	-0.24724	-0.00011857	0.91242	0.00043756	0.66518	0.00031899	479.89868023427874	24.593	0.38744	24.419	24.21	24.598	-0.17484	-0.02972	0.0030821	NaN	17.167	16	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56398			61071	5769	42913	42975							-0.0310545892243681
PVNEKSQL	8	Unmodified	_PVNEKSQL_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.75103759765625	2	457.750724	913.486896	-0.43553	-0.00019937	0.78006	0.00035707	0.34452	0.00015771	457.7508979773472	29.825	0.95444	29.834	29.209	30.164	0.0086708					52	23	4	0	0	0	0.94517	1	1853	1853		45.952	1.4209	1	1174300	+		61072	23737	42914	42976	66290	66290					0.026691945178072274
PVNEKSQL	8	Unmodified	_PVNEKSQL_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.750244140625	2	457.750724	913.486896	-0.38749	-0.00017737	0.91715	0.00041983	0.52967	0.00024246	457.7509137459578	29.484	1.23	29.562	28.612	29.842	0.078344					52	30	3	0	0	0	0.77775	1	1766	1766		60.972	2.19	1	1272000	+		61073	23737	42914	42976	66291	66291					0.026691945178072274
PVNEKSQL	8	Unmodified	_PVNEKSQL_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.75115966796875	2	457.750724	913.486896	-0.052218	-2.3903E-05	0.01558	7.1316E-06	-0.036638	-1.6771E-05	457.7506345967356	29.835	0.92331	29.686	29.296	30.219	-0.14952					58	21	4	0	0	0	0.845	1	1858	1858		55.504	2.1528	1	1834400	+		61074	23737	42914	42976	66292	66292					0.026691945178072274
PVNPLQQK	8	Unmodified	_PVNPLQQK_					0	0	0			REV__ENSG00000181754|ENST00000369864|AMIGO1	REV__ENSG00000181754|ENST00000369864|AMIGO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.9479675292969	2	462.269084	922.523616	0.54424	0.00025158	0.56467	0.00026103	1.1089	0.00051261	462.26907610447785	19.083	0.49428	18.88	18.708	19.202	-0.20371					16	9	2	0	0	0	0.027866	1	379	379		18.324	0.95945	1	41368	+		61075	27421	42915	42977	66293	66293					0.05925491134371441
PVPAGPATFT	10	Unmodified	_PVPAGPATFT_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.77117919921875	2	479.255643	956.496732	0.094039	4.5069E-05	0.77465	0.00037126	0.86869	0.00041633	479.25532654485505	75.284	0.79018	75.039	74.549	75.339	-0.24455					40	19	3	0	0	0	0.03519	1	9137	9137		44.117	0	1	222690			61076	4960	42916	42978	66294	66294					0.016743825231969822
PVPAPGHRR	9	Unmodified	_PVPAPGHRR_					0	0	0		ENST00000219315.8_1_16:58549395-58550426:+|nuORF;ENST00000492050.5_1_16:58549468-58550426:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.8034362792969	2	493.785767	985.556982	-0.10263	-5.0677E-05	-0.74467	-0.00036771	-0.84729	-0.00041838	493.78538420802624	31.915	0.55122	31.915	31.71	32.262	0					22	13	2	0	0	0	0.024517	1	2191	2191		26.796	19.603	1	200660			61077	11170	42917	42979	66295	66295					0.06362537696941217
PVPAPGHRR	9	Unmodified	_PVPAPGHRR_					0	0	0		ENST00000219315.8_1_16:58549395-58550426:+|nuORF;ENST00000492050.5_1_16:58549468-58550426:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.785767	985.556982	-0.31308	-0.0001546	-0.71398	-0.00035255	-1.0271	-0.00050715	493.78529846419514	31.784	0.47863	31.795	31.545	32.023	0.011797	0.016768	-8.4429E-05	NaN	12.959	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274260			61078	11170	42917	42979							0.06362537696941217
PVPAPGHRR	9	Unmodified	_PVPAPGHRR_					0	0	0		ENST00000219315.8_1_16:58549395-58550426:+|nuORF;ENST00000492050.5_1_16:58549468-58550426:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	ENST00000219315.8_1_16:58549395-58550426:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.785767	985.556982	-0.37	-0.0001827	-0.19997	-9.8743E-05	-0.56997	-0.00028145	493.7854811972461	31.556	0.48166	31.625	31.445	31.927	0.068962	-0.15345	0.00042319	NaN	12.959	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194350			61079	11170	42917	42979							0.06362537696941217
PVPCSFFYA	9	Unmodified	_PVPCSFFYA_					0	0	0			REV__ENSG00000170915|ENST00000442253|PAQR8	REV__ENSG00000170915|ENST00000442253|PAQR8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.27734375	2	515.738771	1029.46299	-0.59756	-0.00030819	3.1406	0.0016197	2.543	0.0013115	515.7402390972785	28.759	0.46666	28.755	28.54	29.006	-0.0042019					16	10	2	0	0	0	0.024517	1	1659	1659		35.201	13.241	1	64128	+		61080	26518	42918	42980	66296	66296					-0.05056362240202361
PVPCSFFYA	9	Unmodified	_PVPCSFFYA_					0	0	0			REV__ENSG00000170915|ENST00000442253|PAQR8	REV__ENSG00000170915|ENST00000442253|PAQR8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.738771	1029.46299	-1.2793	-0.00065976	3.7964	0.001958	2.5172	0.0012982	515.7405190607462	28.813	0.46088	28.813	28.571	29.032	0	0.18453	0.00097484	NaN	35.201	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50463	+		61081	26518	42918	42980							-0.05056362240202361
PVPCSFFYA	9	Unmodified	_PVPCSFFYA_					0	0	0			REV__ENSG00000170915|ENST00000442253|PAQR8	REV__ENSG00000170915|ENST00000442253|PAQR8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.738771	1029.46299	-0.44238	-0.00022815	1.0963	0.0005654	0.65391	0.00033725	515.7402930604305	28.761	1.336	28.592	27.649	28.985	-0.16897	-0.03593	-0.0018103	NaN	35.201	50	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218250	+		61082	26518	42918	42980							-0.05056362240202361
PVPCSFFYA	9	Unmodified	_PVPCSFFYA_					0	0	0			REV__ENSG00000170915|ENST00000442253|PAQR8	REV__ENSG00000170915|ENST00000442253|PAQR8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.738771	1029.46299	-0.45351	-0.0002339	0.80946	0.00041747	0.35595	0.00018358	515.7400680642579	28.689	0.53717	28.537	28.203	28.74	-0.15195	-0.091081	-0.0021062	NaN	35.201	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148950	+		61083	26518	42918	42980							-0.05056362240202361
PVPDWTIVL	9	Unmodified	_PVPDWTIVL_					0	0	0			REV__ENSG00000113805|ENST00000263665|CNTN3	REV__ENSG00000113805|ENST00000263665|CNTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.29248046875	2	520.294768	1038.57498	-0.15499	-8.0642E-05	-3.5692	-0.001857	-3.7242	-0.0019377	520.2927579586582	73.296	0.66441	73.025	72.719	73.384	-0.27126					37	16	3	0	0	0	0.43973	1	8906	8906		63.306	11.971	1	1655200	+		61084	22091	42919	42981	66297	66297					0.05723815108422059
PVPEISWSLP	10	Unmodified	_PVPEISWSLP_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.7924194335938	2	562.802957	1123.59136	-0.39833	-0.00022418	-3.1427	-0.0017687	-3.541	-0.0019929	562.801096915227	55.311	0.33651	55.161	55	55.336	-0.15036					17	9	2	0	0	0	0.03519	1	6063	6063		27.882	0	1	224010			61085	6282	42920	42982	66298	66298					0.03450896274512161
PVPEPLPQP	9	Unmodified	_PVPEPLPQP_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.249755859375	2	487.271293	972.528032	-0.2134	-0.00010399	2.7945	0.0013617	2.581	0.0012577	487.27303049728545	25.777	0.17387	25.857	25.749	25.922	0.08009					5	3	2	0	0	0	0.024354	1	1204	1204		38.806	0	1	36592			61086	9361	42921	42983	66299	66299					0.04066955557277652
PVPGLSLR	8	Unmodified	_PVPGLSLR_					0	0	0		ENST00000547451.1_1_12:58158414-58159309:-|nuORF	ENST00000547451.1_1_12:58158414-58159309:-|nuORF	ENST00000547451.1_1_12:58158414-58159309:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	418.900390625	2	419.760895	837.507237	2.7044	0.0011352	-1.9213	-0.00080649	0.78312	0.00032872	419.7598555789107	18.882	0.29731	18.639	18.474	18.771	-0.24256					7	5	2	0	0	0	0.027866	1	330	330		19.997	7.0376	1	11226			61087	16534	42922	42984	66300	66300					0.0819840996828134
PVPHTGLPVW	10	Unmodified	_PVPHTGLPVW_					0	0	0		ENST00000479915.5_1_7:76129456-76134915:+|nuORF	ENST00000479915.5_1_7:76129456-76134915:+|nuORF	ENST00000479915.5_1_7:76129456-76134915:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.8052978515625	2	551.805834	1101.59712	0.1139	6.2851E-05	-0.5389	-0.00029737	-0.425	-0.00023452	551.8053366480084	71.558	1.1391	71.296	71.033	72.173	-0.26199					84	27	6	0	0	0	1.0142	1	8402	8402		44.117	3.3386	1	3275300			61088	15182	42923	42985	66301	66301					0.05038039576857045
PVPILLLVS	9	Unmodified	_PVPILLLVS_					0	0	0		ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.2605895996094	2	475.817879	949.621205	1.0944	0.00052075	1.5119	0.00071941	2.6064	0.0012402	475.8182277022907	40.465	0.51631	40.465	40.212	40.728	0					18	14	2	0	0	0	0.024517	1	3544	3544		7.6903	0	1	148420			61089	11164	42924	42986	66302	66302					0.1443788001051871
PVPKVPIPK	9	Unmodified	_PVPKVPIPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79779052734375	2	487.823495	973.632438	-0.61152	-0.00029831	2.1656	0.0010564	1.5541	0.00075812	487.82432968043304	50.359	0.13671	50.359	50.274	50.411	0					5	3	2	0	0	0	0.024539	1	5263	5263		20.947	5.3051	1	45826	+		61090	25017	42925	42987	66303	66303					0.14456702104655506
PVPLAPLQRL	10	Unmodified	_PVPLAPLQRL_					0	0	0			REV__ENST00000310442.4_2_11:66307144-66311347:-|nuORF	REV__ENST00000310442.4_2_11:66307144-66311347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3262329101562	2	552.350409	1102.68626	-0.13449	-7.4284E-05	-2.1497	-0.0011874	-2.2842	-0.0012617	552.3494403590576	54.046	0.36174	53.849	53.769	54.131	-0.19739					15	10	2	0	0	0	0.03519	1	5697	5697		30.504	4.9296	1	291950	+		61091	30184	42926	42988	66304	66304					0.13902874536347554
PVPLGRSEPT	10	Unmodified	_PVPLGRSEPT_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3059692382812	2	526.790381	1051.56621	-0.30721	-0.00016183	-3.5563	-0.0018734	-3.8635	-0.0020353	526.7891251832649	27.961	0.20835	28.042	27.872	28.08	0.081291					6	4	2	0	0	0	0.03519	1	1531	1531		25.574	0	1	22662	+		61092	27109	42927	42989	66305	66305					0.04248841471940068
PVPLLRPVA	9	Unmodified	_PVPLLRPVA_					0	0	0			REV__ENST00000417954.5_1_21:46945848-46950845:-|nuORF	REV__ENST00000417954.5_1_21:46945848-46950845:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.31451416015625	2	481.313295	960.612037	0.14193	6.8313E-05	-0.3819	-0.00018382	-0.23997	-0.0001155	481.3129679250778	68.529	0.98985	68.529	67.987	68.977	0					60	25	3	0	0	0	0.75282	1	8240	8240		42.474	1.9018	1	1651900	+		61093	32104	42928	42990	66306	66306					0.130155314448416
PVPPILTPSP	10	Unmodified	_PVPPILTPSP_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.744873046875	2	509.302593	1016.59063	-0.55617	-0.00028326	-2.7457	-0.0013984	-3.3019	-0.0016816	509.3013730042627	38.844	0.53994	38.745	38.514	39.054	-0.098755					27	14	3	0	0	0	0.03519	1	3278	3278		29.15	1.2673	1	415650			61094	4268	42929	42991	66307	66307					0.08300101625468415
PVPPPHAL	8	Unmodified	_PVPPPHAL_					0	0	0		nc|ENSG00000170370|Q04743-2|EMX2;ENSG00000170370|ENST00000553456|EMX2	nc|ENSG00000170370|Q04743-2|EMX2	nc|ENSG00000170370|Q04743-2|EMX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2406005859375	2	414.242338	826.470124	-0.99539	-0.00041233	-3.9863	-0.0016513	-4.9817	-0.0020636	414.24060861540454	29.867	0.93482	29.945	29.489	30.424	0.078344					64	22	4	0	0	0	0.9599	1	1843	1843		43.626	1.2299	1	4467400			61095	8029	42930	42992	66308	66308					0.049947384224992675
PVPRPGGGWT	10	Unmodified	_PVPRPGGGWT_					0	0	0		ENST00000533290.5_2_11:47599958-47600264:-|nuORF	ENST00000533290.5_2_11:47599958-47600264:-|nuORF	ENST00000533290.5_2_11:47599958-47600264:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2710571289062	2	512.272158	1022.52976	-1.3044	-0.00066821	-1.1639	-0.00059621	-2.4683	-0.0012644	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	1.1329	1	13326	13326		27.882	1.1893	1	5095800			61096	16313	42931	42993	66309	66309					0.019400093658987316
PVPSAFRLSSV	11	Unmodified	_PVPSAFRLSSV_					0	0	0			REV__ENST00000225777.7_1_17:76168296-76168503:+|nuORF	REV__ENST00000225777.7_1_17:76168296-76168503:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	580.3255615234375	2	580.327131	1158.63971	0.22524	0.00013071	-3.163	-0.0018356	-2.9377	-0.0017049	580.3251628263445	25.235	0.7859	25.316	25.093	25.879	0.080088					63	18	5	0	0	0	0.6032	1	1133	1133		69.628	0	1	3494900	+		61097	29377	42932	42994	66310	66310					0.0667338991440829
PVPTLLLL	8	Unmodified	_PVPTLLLL_					0	0	0		ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	ENSG00000154734|ENST00000284984|ADAMTS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.5484924316406	2	433.291497	864.568441	-0.96611	-0.00041861	-1.8679	-0.00080935	-2.834	-0.001228	433.29060686556045	24.427	0.75557	24.38	23.913	24.669	-0.047148					33	16	3	0	0	0	0.027866	1	1061	1061		9.4706	0	1	174440			61098	6431	42933	42995	66311	66311					0.13073921947716372
PVPVAPGEPL	10	Unmodified	_PVPVAPGEPL_					0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7906494140625	2	488.279118	974.543683	-0.81511	-0.000398	0.47339	0.00023115	-0.34172	-0.00016685	488.27897843756966	84.37	0.2947	84.396	84.162	84.457	0.026558					8	6	2	0	0	0	0.03519	1	10460	10460		47.916	15.103	1	77268	+		61099	23361	42934	42996	66312	66312					0.055392420743373805
PVPVIAMVN	9	Unmodified	_PVPVIAMVN_					0	0	0		ENSG00000134463|ENST00000379215|ECHDC3;nc|ENSG00000134463|Q96DC8-2|ECHDC3;ENST00000495787.1_1_10:11797355-11797613:+|nuORF	ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.27227783203125	2	470.270238	938.525924	-0.047033	-2.2118E-05	4.0527	0.0019059	4.0057	0.0018838	470.2720597866912	91.389	1.7988	91.249	90.823	92.622	-0.13942					104	42	5	0	0	0	0.92825	1	11222	11222		30.504	0.6621	1	5353800			61100	4799	42935	42997	66313	66313					0.05420203547816982
PVPVVRAM	8	Unmodified	_PVPVVRAM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.75933837890625	2	434.757298	867.500044	0.64612	0.00028091	3.8502	0.0016739	4.4963	0.0019548	434.75893033757467	86.807	1.5618	86.807	86.128	87.69	0					94	36	5	0	0	0	0.94001	4	10928	10882;10904;10928;10944		46.766	14.812	1	5395200	+		61101	23007;35304	42936	42998	66314;66315;66316;66317	66316					0.06099354096204479
PVPVVRAM	8	Unmodified	_PVPVVRAM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.75927734375	2	434.757298	867.500044	0.30541	0.00013278	4.2307	0.0018393	4.5361	0.0019721	434.7590631513954	86.846	1.5284	86.801	86.076	87.604	-0.045105					104	35	5	0	0	0	1.0017	1	10895	10895		37.028	10.232	1	5549200	+		61102	23007;35304	42936	42998	66318	66318					0.06099354096204479
PVPVVRAM	8	Unmodified	_PVPVVRAM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.75946044921875	2	434.757298	867.500044	0.47737	0.00020754	4.0662	0.0017678	4.5435	0.0019753	434.7590122874237	86.762	1.6067	86.783	86.113	87.72	0.021263					95	37	5	0	0	0	0.94001	4	10828	10808;10816;10828;10854		46.766	14.812	1	4555800	+		61103	23007;35304	42936	42998	66319;66320;66321;66322	66321					0.06099354096204479
PVPVVRAM	8	Unmodified	_PVPVVRAM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.75927734375	2	434.757298	867.500044	0.66526	0.00028923	4.0922	0.0017791	4.7575	0.0020684	434.7589968686671	86.998	1.8354	86.856	86.147	87.982	-0.14218					104	43	4	0	0	0	1.0017	1	10595	10595		37.028	5.0736	1	5508400	+		61104	23007;35304	42936	42998	66323	66323					0.06099354096204479
PVPVVRAM	8	Unmodified	_PVPVVRAM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7590637207031	2	434.757298	867.500044	0.4777	0.00020768	4.1594	0.0018083	4.6371	0.002016	434.75903003403516	86.907	1.794	86.77	86.268	88.062	-0.13734					101	42	4	0	0	0	1.0017	1	10561	10561		37.028	9.1462	1	4266100	+		61105	23007;35304	42936	42998	66324	66324					0.06099354096204479
PVPYGLLV	8	Unmodified	_PVPYGLLV_					0	0	0			REV__ENST00000474221.5_1_11:293333-294746:+|nuORF	REV__ENST00000474221.5_1_11:293333-294746:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.9024658203125	2	429.260197	856.50584	0.16234	6.9684E-05	1.3722	0.00058903	1.5345	0.00065872	429.2606431921345	110.19	0.24931	110.18	110.06	110.31	-0.009491					20	11	3	0	0	0	0.027866	1	13933	13933		10.185	0	1	164100	+		61106	24133	42937	42999	66325	66325					0.071847758795343
PVPYPLPLPRV	11	Unmodified	_PVPYPLPLPRV_					0	0	0			REV__ENST00000601502.1_1_19:8608994-8610536:-|nuORF	REV__ENST00000601502.1_1_19:8608994-8610536:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	624.3759765625	2	624.379166	1246.74378	0.20021	0.00012501	0.69582	0.00043445	0.89603	0.00055946	624.3795808461296	100.61	0.57427	100.62	100.3	100.87	0.010117					32	13	3	0	0	0	1.0844	1	12836	12836		15.642	0.77694	1	549860	+		61107	35859	42938	43000	66326	66326					0.1302771674190808
PVQAILLP	8	Unmodified	_PVQAILLP_					0	0	0		ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.57928466796875	2	425.773471	849.53239	0.099117	4.2201E-05	3.6224	0.0015423	3.7215	0.0015845	425.77484180875194	36.63	0.77866	36.425	36.021	36.8	-0.20518					25	19	2	0	0	0	0.027866	1	2826	2826		14.664	10.98	1	85691			61108	17590	42939	43001	66327	66327					0.10160464770854105
PVQAILLP	8	Unmodified	_PVQAILLP_					0	0	0		ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.773471	849.53239	-0.41927	-0.00017851	4.338	0.001847	3.9187	0.0016685	425.7751361798978	36.505	1.0739	36.505	36.195	37.269	0	0.085575	0.00064064	NaN	8.8223	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109120			61109	17590	42939	43001							0.10160464770854105
PVQAILLP	8	Unmodified	_PVQAILLP_					0	0	0		ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	425.773471	849.53239	-0.81055	-0.00034511	4.5451	0.0019352	3.7345	0.0015901	425.7751683354829	36.325	0.74272	36.282	36.067	36.81	-0.042454	-0.1373	0.00081699	NaN	8.8223	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107840			61110	17590	42939	43001							0.10160464770854105
PVQAILLP	8	Unmodified	_PVQAILLP_					0	0	0		ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	ENST00000608290.1_1_22:46409584-46410459:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	425.773471	849.53239	-0.12914	-5.4984E-05	3.0908	0.001316	2.9617	0.001261	425.77488621160416	36.59	1.0412	36.628	36.267	37.308	0.038044	0.2087	-0.0004214	NaN	8.8223	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110540			61111	17590	42939	43001							0.10160464770854105
PVQAQVMCL	9	Unmodified	_PVQAQVMCL_					0	0	0			REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77081298828125	2	494.751356	987.488158	-1.1303	-0.00055922	1.5297	0.00075683	0.39941	0.00019761	494.7520858397567	22.126	0.82353	22.2	21.783	22.607	0.073954					33	16	3	0	0	0	0.024517	1	752	752		35.201	13.241	1	339590	+		61112	20880	42940	43002	66328	66328					-0.006086307092914467
PVQIMIIV	8	Unmodified	_PVQIMIIV_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.3127746582031	2	456.782982	911.55141	2.2427	0.0010244	2.0803	0.00095024	4.323	0.0019747	456.78389124215	19.038	0.29602	18.805	18.632	18.928	-0.23345					12	5	3	0	0	0	0.027866	1	349	349		21.702	0.7554	1	37117	+		61113	22635	42941	43003	66329	66329					0.09209678070260452
PVQIMIIV	8	Unmodified	_PVQIMIIV_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.782982	911.55141	0.49619	0.00022665	3.7528	0.0017142	4.249	0.0019409	456.78452167991014	19.073	0.44418	18.87	18.658	19.102	-0.20371	0.032431	0.00095562	NaN	21.702	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30794	+		61114	22635	42941	43003							0.09209678070260452
PVQNEPLVS	9	Unmodified	_PVQNEPLVS_					0	0	0			REV__nc|ENSG00000019186|Q07973-3|CYP24A1	REV__nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7812194824219	2	491.763832	981.513111	0.28688	0.00014108	-0.85745	-0.00042166	-0.57057	-0.00028059	491.7633894795062	62.856	0.37426	62.91	62.679	63.054	0.054104					14	8	2	0	0	0	0.024436	1	7224	7224		23.042	0	1	854190	+		61115	19986	42942	43004	66330	66330					0.021614636892991257
PVQPWASLSP	10	Unmodified	_PVQPWASLSP_					0	0	0		nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000485525.5_1_2:113931616-113943025:+|nuORF;ENST00000418251.6_1_2:113931616-113943025:+|nuORF	nc|ENSG00000125637|Q8NDX1-2|PSD4	nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2981567382812	2	541.287474	1080.5604	-0.9071	-0.000491	-2.9044	-0.0015721	-3.8115	-0.0020631	541.2857567315041	22.379	0.85308	22.303	21.841	22.694	-0.075296					40	17	3	0	0	0	0.03519	1	731	731		34.173	12.213	1	365580			61116	4123	42943	43005	66331	66331					0.023337429602634074
PVQRVLST	8	Unmodified	_PVQRVLST_					0	0	0			REV__ENST00000486442.5_1_2:23929559-23929871:+|nuORF	REV__ENST00000486442.5_1_2:23929559-23929871:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7608642578125	2	450.269084	898.523616	-0.34366	-0.00015474	1.3136	0.00059147	0.96994	0.00043673	450.26936795385996	22.109	0.94813	21.922	21.376	22.324	-0.18605					26	19	2	0	0	0	0.027866	1	786	786		13.775	0	1	39679	+		61117	33592	42944	43006	66332	66332					0.07029491134380805
PVQVELLN	8	Unmodified	_PVQVELLN_					0	0	0			REV__ENSG00000235173|ENST00000347708|HGH1;REV__ENST00000534255.1_1_8:145193835-145194452:+|nuORF	REV__ENSG00000235173|ENST00000347708|HGH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.24609375	2	456.263468	910.512382	-0.12541	-5.722E-05	4.477	0.0020427	4.3516	0.0019855	456.26548609922384	42.152	0.717	41.921	41.614	42.331	-0.23029					31	19	2	0	0	0	0.027866	1	3786	3786		27.882	0	1	141290	+		61118	28924;34631	42945	43007	66333	66333					0.05354669040241333
PVRAFTANN	9	Unmodified	_PVRAFTANN_					0	0	0			REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	REV__ENST00000470867.5_1_7:44156819-44163110:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.72271728515625	2	495.261791	988.509028	-0.11762	-5.8252E-05	3.3849	0.0016764	3.2673	0.0016182	495.263480205588	47.945	0.72242	47.945	47.622	48.344	0					35	21	2	0	0	0	0.024021	1	4798	4798		58.782	2.0609	1	549030	+		61119	33163	42946	43008	66334	66334					0.014314189862261628
PVRAKSKSA	9	Unmodified	_PVRAKSKSA_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2882080078125	2	472.287808	942.561064	0.20114	9.4994E-05	-0.67758	-0.00032001	-0.47644	-0.00022502	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	0.96906	1	12054	12054		26.693	3.6504	1	52660000			61120	1801	42947	43009	66335	66335					0.0874858239999412
PVRAPARLLL	10	Unmodified	_PVRAPARLLL_					0	0	0			REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.3042602539062	2	553.36385	1104.71315	-1.1317	-0.00062624	-0.95626	-0.00052916	-2.088	-0.0011554	553.3633128929664	22.406	0.28984	22.48	22.317	22.607	0.073954					9	5	2	0	0	0	0.03519	1	720	720		16.473	0	1	12335	+		61121	35616	42948	43010	66336	66336					0.1649798314756481
PVRATTNIFE	10	Unmodified	_PVRATTNIFE_					0	0	0			REV__nc|ENSG00000167419|P22079-2|LPO	REV__nc|ENSG00000167419|P22079-2|LPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.774658203125	2	574.308938	1146.60332	-0.42503	-0.0002441	4.0009	0.0022978	3.5759	0.0020537	574.310584625307	34.554	0.48877	34.347	34.201	34.69	-0.20695					23	11	3	0	0	0	0.03519	1	2547	2547		32.812	19.853	1	108610	+		61122	26140	42949	43011	66337	66337					0.035885130176893654
PVRCVAWF	8	Unmodified	_PVRCVAWF_					0	0	0			REV__nc|ENSG00000107954|O76050-2|NEURL1	REV__nc|ENSG00000107954|O76050-2|NEURL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7825012207031	2	489.254923	976.495293	-0.71599	-0.0003503	2.7589	0.0013498	2.0429	0.00099949	489.258036415202	36.699	0.33194	36.737	36.511	36.843	0.038044					13	8	2	0	0	0	0.027866	1	2892	2892		29.842	0	1	73502	+		61123	21701	42950	43012	66338	66338					0.006104699534375868
PVREVRGT	8	Unmodified	_PVREVRGT_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|34|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|24|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|29|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2643127441406	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0106	3	10010	9986;9998;10010		35.618	5.1146	1	3048400			61124	38001	42951	43013	66339;66340;66341	66341					0.05435722848869773
PVREVRGT	8	Unmodified	_PVREVRGT_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|34|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|24|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|29|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2641296386719	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.96719	3	9982	9970;9982;10006		42.474	0	1	2903100			61125	38001	42951	43013	66342;66343;66344	66343					0.05435722848869773
PVREVRGT	8	Unmodified	_PVREVRGT_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|34|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|24|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|29|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26409912109375	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0106	2	10175	10152;10175		35.618	1.3541	1	2920900			61126	38001	42951	43013	66345;66346	66346					0.05435722848869773
PVREVRGT	8	Unmodified	_PVREVRGT_					0	0	0		SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|34|3|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|24|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|29|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|31|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2643127441406	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0239	3	9642	9642;9848;9957		33.516	2.6214	1	3503800			61127	38001	42951	43013	66347;66348;66349	66347					0.05435722848869773
PVRGEETTD	9	Unmodified	_PVRGEETTD_					0	0	0		ENST00000497283.1_1_3:50649969-50651260:+|nuORF	ENST00000497283.1_1_3:50649969-50651260:+|nuORF	ENST00000497283.1_1_3:50649969-50651260:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.24945068359375	2	502.238178	1002.4618	-0.058122	-2.9191E-05	-3.9681	-0.0019929	-4.0262	-0.0020221	502.23600447467123	104.83	0.44728	104.83	104.68	105.13	0.00096893					24	14	2	0	0	0	0.024405	1	13418	13418		27.882	1.1893	1	115180			61128	15588	42952	43014	66350	66350					-0.03932905075430426
PVRGGRLN	8	Unmodified	_PVRGGRLN_					0	0	0			REV__ENST00000575985.1_1_17:4890483-4890591:+|nuORF	REV__ENST00000575985.1_1_17:4890483-4890591:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7592468261719	2	434.759218	867.503883	0.063598	2.765E-05	0.10561	4.5913E-05	0.1692	7.3563E-05	434.75923619358696	86.978	1.558	86.791	86.167	87.725	-0.18696					82	36	4	0	0	0	1.0239	1	10593	10593		33.516	0	1	6540900	+		61129	35467	42953	43015	66351	66351					0.06483159914273529
PVRGKPVWEPL	11	Unmodified	_PVRGKPVWEPL_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.58612060546875	3	426.583674	1276.72919	3.2831	0.0014005	2.3302	0.00099401	5.6133	0.0023945	426.5846861357915	18.542	0.99362	18.299	18.074	19.068	-0.24256					55	19	5	0	0	0	1.0233	1	305	305		31.634	7.4025	1	1469500			61130	18100	42954	43016	66352	66352					0.10189644593788216
PVRGLRGT	8	Unmodified	_PVRGLRGT_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2619934082031	2	428.261594	854.508634	0.10911	4.6729E-05	0.34496	0.00014773	0.45407	0.00019446	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0574	1	11477	11477		24.203	0	1	88816000			61131	14826	42955	43017	66353	66353					0.07556044057048439
PVRGPGSPPP	10	Unmodified	_PVRGPGSPPP_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.76788330078125	2	480.766709	959.518865	-0.4943	-0.00023764	-0.428	-0.00020577	-0.9223	-0.00044341	480.766213553103	36.649	1.85	36.687	35.569	37.419	0.038044					129	49	3	0	0	0	0.74632	1	2903	2903		64.207	2.0999	1	5721100			61132	8191	42956	43018	66354	66354					0.03748606991621273
PVRGQQTTS	9	Unmodified	_PVRGQQTTS_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2905578613281	2	487.256705	972.498858	-0.52085	-0.00025379	1.4253	0.0006945	0.90447	0.00044071	487.256876579837	27.993	0.58769	27.989	27.654	28.242	-0.0042019					22	14	2	0	0	0	0.024397	1	1537	1537		47.657	10.498	1	74994	+		61133	22183	42957	43019	66355	66355					0.011508112609931231
PVRGVKELLA	10	Unmodified	_PVRGVKELLA_					0	0	0			REV__ENST00000465402.1_1_X:53230656-53239709:-|nuORF	REV__ENST00000465402.1_1_X:53230656-53239709:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.738037109375	2	541.340041	1080.66553	-0.83778	-0.00045352	0.30312	0.00016409	-0.53465	-0.00028943	541.3401352354376	66.554	0.37309	66.33	66.066	66.439	-0.22374					12	9	2	0	0	0	0.03519	1	7655	7655		9.7057	0	1	82942	+		61134	33002	42958	43020	66356	66356					0.12842284156727146
PVRLKERK	8	Unmodified	_PVRLKERK_					0	0	0		ENSG00000105085|ENST00000263390|MED26	ENSG00000105085|ENST00000263390|MED26	ENSG00000105085|ENST00000263390|MED26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3104858398438	2	513.33255	1024.65055	-1.3669	-0.00070168	-2.5059	-0.0012863	-3.8728	-0.001988	513.3310255305952	65.011	0.18221	65.011	64.909	65.091	0					7	4	2	0	0	0	0.027866	1	7679	7679		44.117	19.914	1	90590			61135	2633	42959	43021	66357	66357					0.13920837079353987
PVRLPLSVK	9	Unmodified	_PVRLPLSVK_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.2642822265625	2	504.831852	1007.64915	0.13429	6.7794E-05	2.3545	0.0011886	2.4888	0.0012564	504.83152679140176	52.638	0.93399	52.73	52.363	53.297	0.091938					42	24	3	0	0	0	0.02435	1	5591	5591		51.335	25.885	1	92633			61136	8184	42960	43022	66358	66358					0.14563202990609625
PVRLPLSVK	9	Unmodified	_PVRLPLSVK_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.831852	1007.64915	-0.32717	-0.00016516	1.5752	0.0007952	1.248	0.00063004	505.33438382865023	52.338	0.15553	52.338	52.236	52.391	0	-0.19558	-0.00033073	NaN	42.396	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62439			61137	8184	42960	43022							0.14563202990609625
PVRLRTGG	8	Unmodified	_PVRLRTGG_					0	0	0		ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2616271972656	2	428.261594	854.508634	0.4968	0.00021276	-0.17636	-7.5526E-05	0.32044	0.00013723	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0574	1	11426	11426		25.45	3.7478	1	86424000			61138	13604	42961	43023	66359	66359					0.07556044057048439
PVRLRTGG	8	Unmodified	_PVRLRTGG_					0	0	0		ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2618103027344	2	428.261594	854.508634	-0.55429	-0.00023738	0.94817	0.00040607	0.39388	0.00016869	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	0.97924	1	11121	11121		40.573	5.3719	1	83817000			61139	13604	42961	43023	66360	66360					0.07556044057048439
PVRLRTGG	8	Unmodified	_PVRLRTGG_					0	0	0		ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2616271972656	2	428.261594	854.508634	0.60688	0.0002599	-0.36221	-0.00015512	0.24467	0.00010478	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.0338	3	10982	10982;11004;11040		31.955	6.5047	1	63872000			61140	13604	42961	43023	66361;66362;66363	66361					0.07556044057048439
PVRNLHLH	8	Unmodified	_PVRNLHLH_					0	0	0		ENST00000595922.1_1_19:14920751-14945989:-|nuORF	ENST00000595922.1_1_19:14920751-14945989:-|nuORF	ENST00000595922.1_1_19:14920751-14945989:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.1922912597656	2	493.288143	984.561733	0.17708	8.7349E-05	-4.4625	-0.0022013	-4.2854	-0.0021139	493.28532866748714	24.586	0.45819	24.664	24.501	24.959	0.078344					19	9	3	0	0	0	0.027866	1	1058	1058		19.36	6.4008	1	471150			61141	17426	42962	43024	66364	66364					0.06883421839711446
PVRPGKPG	8	Unmodified	_PVRPGKPG_					0	0	0		ENST00000480931.1_1_3:128580492-128584319:-|nuORF	ENST00000480931.1_1_3:128580492-128584319:-|nuORF	ENST00000480931.1_1_3:128580492-128584319:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.233154296875	2	404.245412	806.476272	1.0885	0.00044003	4.1245	0.0016673	5.213	0.0021073	404.2465279083114	84.361	0.54597	84.361	84.041	84.587	0					18	12	2	0	0	0	0.027866	1	10526	10526		14.664	5.1935	1	88098			61142	15217	42963	43025	66365	66365					0.06529256654050641
PVRREVGG	8	Unmodified	_PVRREVGG_					0	0	0		SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|8|1|sense	SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense	SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2516174316406	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	1.0574	1	9643	9643		26.796	0	1	1610700			61143	38013	42964	43026	66366	66366					0.04839453677391248
PVRREVGG	8	Unmodified	_PVRREVGG_					0	0	0		SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|8|1|sense	SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense	SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.25146484375	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.0574	1	9584	9584		26.796	1.3459	1	1590300			61144	38013	42964	43026	66367	66367					0.04839453677391248
PVRREVGG	8	Unmodified	_PVRREVGG_					0	0	0		SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|8|1|sense	SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense	SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|42|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25140380859375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0574	2	9356	9356;9368		26.796	1.3459	1	2257900			61145	38013	42964	43026	66368;66369	66368					0.04839453677391248
PVRRHKALT	9	Unmodified	_PVRRHKALT_					0	0	0			REV__nc|ENSG00000113595|P36406-3|TRIM23	REV__nc|ENSG00000113595|P36406-3|TRIM23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.7833862304688	2	539.335624	1076.6567	-0.59224	-0.00031941	0.47471	0.00025603	-0.11753	-6.3388E-05	539.3355874261624	19.245	0.39486	19.126	18.953	19.348	-0.11872					13	7	2	0	0	0	0.024447	1	382	382		40.778	28.571	1	38462	+		61146	22077	42965	43027	66370	66370					0.12143355310877268
PVRRNASI	8	Unmodified	_PVRRNASI_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7723083496094	2	456.772326	911.530098	0.69424	0.00031711	-0.97041	-0.00044326	-0.27617	-0.00012615	456.77181425540806	89.099	2.1744	89.078	88.266	90.44	-0.021645					106	51	4	0	0	0	1.043	1	11239	11239		30.504	1.3541	1	3725800			61147	18203	42966	43028	66371	66371					0.07079429085752054
PVRRNASI	8	Unmodified	_PVRRNASI_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7721862792969	2	456.772326	911.530098	-0.48279	-0.00022053	0.27966	0.00012774	-0.20313	-9.2785E-05	456.77238741278404	89.196	1.871	89.033	88.554	90.425	-0.1626					101	44	4	0	0	0	0.93274	4	10917	10869;10880;10892;10917		47.916	1.9636	1	5190000			61148	18203	42966	43028	66372;66373;66374;66375	66375					0.07079429085752054
PVRRNASI	8	Unmodified	_PVRRNASI_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.7723388671875	2	456.772326	911.530098	-0.2547	-0.00011634	-0.65491	-0.00029914	-0.90961	-0.00041548	456.7722485298994	89.203	2.0073	89.075	88.281	90.288	-0.12774					107	47	4	0	0	0	0.99042	1	10925	10925		38.806	1.647	1	3333900			61149	18203	42966	43028	66376	66376					0.07079429085752054
PVRRNASI	8	Unmodified	_PVRRNASI_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.7720947265625	2	456.772326	911.530098	0.23368	0.00010674	-0.52507	-0.00023984	-0.29139	-0.0001331	456.77201428085914	89.216	1.5163	89.079	88.482	89.998	-0.13761					87	35	5	0	0	0	0.99042	1	10869	10869		38.806	1.647	1	3359400			61150	18203	42966	43028	66377	66377					0.07079429085752054
PVRRTTRLGNR	11	Unmodified	_PVRRTTRLGNR_					0	0	0			REV__ENST00000512894.5_3_3:134205095-134225968:+|nuORF	REV__ENST00000512894.5_3_3:134205095-134225968:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.60137939453125	3	442.600609	1324.78	-0.025854	-1.1443E-05	1.0031	0.00044396	0.97722	0.00043252	442.60099916555686	102.47	0.68022	102.34	102.04	102.72	-0.12666					29	15	2	0	0	0	1.0648	1	12737	12737		21.032	2.5012	1	526640	+		61151	34145	42967	43029	66378	66378					0.13059986691337144
PVRSGRAL	8	Unmodified	_PVRSGRAL_					0	0	0			REV__ENST00000437972.1_2_3:48229548-48229873:-|nuORF	REV__ENST00000437972.1_2_3:48229548-48229873:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.2619323730469	2	428.261594	854.508634	-0.27209	-0.00011653	0.66798	0.00028607	0.39589	0.00016955	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0106	1	11110	11110		35.618	2.1027	1	68116000	+		61152	30078	42968	43030	66379	66379					0.07556044057048439
PVRSKARR	8	Unmodified	_PVRSKARR_					0	0	0		ENSG00000205899|ENST00000391429|BHLHA9	ENSG00000205899|ENST00000391429|BHLHA9	ENSG00000205899|ENST00000391429|BHLHA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2919921875	2	485.306867	968.599181	-1.4182	-0.00068826	-3.4294	-0.0016643	-4.8476	-0.0023526	485.305405400841	59.934	0.22856	60.013	59.936	60.165	0.078884					11	5	3	0	0	0	0.027866	1	6789	6789		17.365	5.1581	1	141510			61153	10453	42969	43031	66380	66380					0.11362513105325434
PVRTGLLVLPL	11	Unmodified	_PVRTGLLVLPL_					0	0	0			REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF	REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.3428955078125	2	589.386991	1176.75943	-0.83979	-0.00049496	-2.8295	-0.0016677	-3.6693	-0.0021626	589.3865746624673	92.683	0.33341	92.561	92.464	92.797	-0.12242					14	7	3	0	0	0	0.024749	1	11403	11403		25.574	6.4705	1	59590	+		61154	31115	42970	43032	66381	66381					0.178120032589959
PVRVARPQLN	10	Unmodified	_PVRVARPQLN_					0	0	0		ENST00000490459.5_1_2:32095017-32236086:-|nuORF	ENST00000490459.5_1_2:32095017-32236086:-|nuORF	ENST00000490459.5_1_2:32095017-32236086:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.345458984375	2	575.346189	1148.67783	0.60113	0.00034586	-1.9062	-0.0010967	-1.3051	-0.00075088	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	1.1286	1	12379	12379		25.574	1.0549	1	3650400			61155	15431	42971	43033	66382	66382					0.10943320619753649
PVRVLARRVR	10	Unmodified	_PVRVLARRVR_					0	0	0		ENST00000427826.1_1_6:33383087-33383872:+|nuORF;ENST00000479029.1_1_6:33383289-33383872:+|nuORF;ENST00000486845.1_1_6:33382534-33383872:+|nuORF;ENSG00000112511|ENST00000374516|PHF1	ENST00000427826.1_1_6:33383087-33383872:+|nuORF	ENST00000427826.1_1_6:33383087-33383872:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.3563842773438	2	611.404373	1220.79419	-2.0853	-0.001275	-3.3527	-0.0020499	-5.4381	-0.0033249	611.402952190041	94.102	0.21708	93.964	93.834	94.051	-0.13779					8	4	3	0	0	0	0.03519	1	11588	11588		14.865	0	1	32206			61156	3217	42972	43034	66383	66383					0.19262683910301348
PVSAPGRALV	10	Unmodified	_PVSAPGRALV_					0	0	0			REV__nc|ENSG00000070814|Q13428-2|TCOF1	REV__nc|ENSG00000070814|Q13428-2|TCOF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.78973388671875	2	483.790184	965.565815	-0.44872	-0.00021709	-0.16439	-7.953E-05	-0.61311	-0.00029662	483.7900962984872	45.834	1.9065	45.878	45.11	47.016	0.043877					125	54	4	0	0	0	0.96822	1	4415	4415		49.536	3.5841	1	24231000	+		61157	20438	42973	43035	66384	66384					0.08165466542766353
PVSARYSN	8	Unmodified	_PVSARYSN_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185;nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.20831298828125	2	447.227417	892.44028	-0.31318	-0.00014006	0.76733	0.00034317	0.45415	0.00020311	447.2277275401633	31.597	0.64289	31.666	31.366	32.009	0.068962					25	15	2	0	0	0	0.027866	1	2108	2108		17.365	0	1	271140			61158	5959	42974	43036	66385	66385					-0.010242453134765128
PVSARYSN	8	Unmodified	_PVSARYSN_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185;nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	447.227417	892.44028	-0.23416	-0.00010472	0.51594	0.00023074	0.28178	0.00012602	447.22753447226864	31.93	0.55431	31.93	31.669	32.224	0	0.10112	7.834E-05	NaN	21.96	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263640			61159	5959	42974	43036							-0.010242453134765128
PVSARYSN	8	Unmodified	_PVSARYSN_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185;nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	447.227417	892.44028	-0.12715	-5.6866E-05	0.2598	0.00011619	0.13265	5.9324E-05	447.22752827819386	31.847	0.43999	31.859	31.583	32.023	0.011797	0.030031	-0.00015077	NaN	21.96	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204890			61160	5959	42974	43036							-0.010242453134765128
PVSARYSN	8	Unmodified	_PVSARYSN_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185;nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	447.227417	892.44028	0.15597	6.9754E-05	-0.26684	-0.00011934	-0.11087	-4.9583E-05	447.2271277598542	31.996	0.69502	31.803	31.554	32.249	-0.19261	-0.025388	-0.00062182	NaN	21.96	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51016			61161	5959	42974	43036							-0.010242453134765128
PVSARYSN	8	Unmodified	_PVSARYSN_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185;nc|ENSG00000147394|O15231-9|ZNF185;nc|ENSG00000147394|O15231-5|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	447.227417	892.44028	-0.28274	-0.00012645	-0.29683	-0.00013275	-0.57957	-0.0002592	447.2270387016168	32.043	0.63553	31.885	31.569	32.204	-0.15772	0.056588	-0.00064865	NaN	21.96	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59848			61162	5959	42974	43036							-0.010242453134765128
PVSDRVTK	8	Unmodified	_PVSDRVTK_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.28179931640625	2	451.258717	900.50288	1.2051	0.00054381	-1.5615	-0.00070464	-0.35641	-0.00016083	451.25786467970477	51.302	0.4669	51.19	50.934	51.401	-0.11163					20	11	2	0	0	0	0.027866	1	5237	5237		30.504	6.9809	1	246930		+	61163	507	42975	43037	66386	66386					0.04864900754705559
PVSIRQERA	9	Unmodified	_PVSIRQERA_					0	0	0			REV__ENSG00000166317|ENST00000394810|SYNPO2L	REV__ENSG00000166317|ENST00000394810|SYNPO2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3060913085938	2	528.301447	1054.58834	-0.7859	-0.00041519	0.33125	0.000175	-0.45465	-0.00024019	528.3021746924156	28.387	0.34171	28.383	28.157	28.499	-0.0042019					16	7	3	0	0	0	0.024541	1	1606	1606		11.511	0	1	41295	+		61164	25998	42976	43038	66387	66387					0.06323065940387096
PVSISLALAM	10	Unmodified	_PVSISLALAM_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2909851074219	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0004	2	10228	10228;10243		45.952	12.436	1	10074000			61165	18827	42977	43039	66388;66389	66388					0.06244455373712299
PVSLALAVV	9	Unmodified	_PVSLALAVV_					0	0	0		ENST00000379942.4_1_X:19002589-19002691:-|nuORF	ENST00000379942.4_1_X:19002589-19002691:-|nuORF	ENST00000379942.4_1_X:19002589-19002691:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7779235839844	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	1.0101	1	2912	2912		18.324	0.95945	1	8541000			61166	13290	42978	43040	66390	66390					0.10388447425282266
PVSLEPYL	8	Unmodified	_PVSLEPYL_					0	0	0		ENST00000584430.1_1_18:856598-856898:+|nuORF	ENST00000584430.1_1_18:856598-856898:+|nuORF	ENST00000584430.1_1_18:856598-856898:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.25537109375	2	459.252569	916.490584	-0.19602	-9.0023E-05	-3.2926	-0.0015121	-3.4886	-0.0016021	459.25099425540327	29.272	0.59868	29.35	29.284	29.883	0.078344					24	14	3	0	0	0	0.027866	1	1724	1724		40.573	13.88	1	624560			61167	17204	42979	43041	66391	66391					0.028998642916462813
PVSLTAHSL	9	Unmodified	_PVSLTAHSL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.2142333984375	2	462.761092	923.507631	0.15696	7.2635E-05	0.12585	5.8236E-05	0.28281	0.00013087	462.76103800296255	50.584	0.78514	50.304	49.839	50.624	-0.27977					30	20	2	0	0	0	0.024477	1	5089	5089		35.618	12.576	1	559710			61168	1698	42980	43042	66392	66392					0.04281784897466423
PVSLTAHSL	9	Unmodified	_PVSLTAHSL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.761092	923.507631	0.73297	0.00033919	-0.182	-8.4223E-05	0.55097	0.00025497	462.7608724895186	50.203	0.86033	50.284	49.954	50.814	0.080994	-0.030338	-0.00041294	NaN	27.882	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	915880			61169	1698	42980	43042							0.04281784897466423
PVSLTAHSL	9	Unmodified	_PVSLTAHSL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.761092	923.507631	0.16042	7.4234E-05	0.14922	6.9054E-05	0.30964	0.00014329	462.7610345616943	50.386	0.71117	50.281	49.933	50.644	-0.10558	-0.033678	-0.00010638	NaN	27.882	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632090			61170	1698	42980	43042							0.04281784897466423
PVSLTAHSL	9	Unmodified	_PVSLTAHSL_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.761092	923.507631	0.26494	0.0001226	0.05797	2.6826E-05	0.32291	0.00014943	462.7609848720351	50.505	0.70612	50.325	50.017	50.723	-0.18071	0.01035	-0.00019084	NaN	27.882	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	670720			61171	1698	42980	43042							0.04281784897466423
PVSPPSLWDLF	11	Unmodified	_PVSPPSLWDLF_					0	0	0			REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.7037658691406	3	419.888651	1256.64412	-0.30343	-0.00012741	-0.15737	-6.608E-05	-0.4608	-0.00019349	420.2234123898215	33.698	0.11366	33.497	33.442	33.555	-0.20019					4	2	2	0	0	0	0.024736	1	2416	2416		38.754	15.376	1	63469	+		61172	29703	42981	43043	66393	66393					0.026068543373185094
PVSSPPPPGG	10	Unmodified	_PVSSPPPPGG_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2315368652344	2	446.232168	890.449782	0.088406	3.945E-05	-0.63717	-0.00028433	-0.54876	-0.00024488	446.23196670301775	101.18	2.1749	101.19	100.06	102.24	0.0090256					122	51	5	0	0	0	1.0541	1	12912	12912		38.806	3.1879	1	6913800			61173	5858	42982	43044	66394	66394					0.00017522972063943598
PVSSVSFC	8	Unmodified	_PVSSVSFC_					0	0	0			REV__ENST00000439908.1_1_X:18884334-18884616:+|nuORF	REV__ENST00000439908.1_1_X:18884334-18884616:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.1940002441406	2	413.194196	824.37384	0.62283	0.00025735	-1.9501	-0.00080576	-1.3273	-0.00054841	413.19330068265566	83.142	2.366	82.928	81.834	84.2	-0.21374					97	54	3	0	0	0	1.0133	1	10028	10028		35.201	1.6851	1	1091100	+		61174	32517	42983	43045	66395	66395					-0.04537197199726961
PVSSWFGP	8	Unmodified	_PVSSWFGP_					0	0	0		ENST00000556683.1_1_14:51712110-51721234:+|nuORF;ENSG00000139921|ENST00000457354|TMX1	ENST00000556683.1_1_14:51712110-51721234:+|nuORF	ENST00000556683.1_1_14:51712110-51721234:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.1993103027344	2	438.716153	875.417754	0.32456	0.00014239	-1.9345	-0.0008487	-1.6099	-0.00070631	438.71511922035035	61.869	0.36398	61.611	61.342	61.706	-0.25725					11	8	2	0	0	0	0.027866	1	6927	6927		37.028	11.578	1	55209			61175	5377	42984	43046	66396	66396					-0.02493844711091242
PVSTAWAH	8	Unmodified	_PVSTAWAH_					0	0	0		ENST00000557876.1_1_15:41221689-41222731:+|nuORF	ENST00000557876.1_1_15:41221689-41222731:+|nuORF	ENST00000557876.1_1_15:41221689-41222731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801513671875	2	434.719227	867.423902	-0.37168	-0.00016158	4.1027	0.0017835	3.731	0.0016219	434.7208876878424	38.874	0.7543	38.776	38.514	39.269	-0.098751					42	20	3	0	0	0	0.027866	1	3323	3323		28.254	15.295	1	962790			61176	16741	42985	43047	66397	66397					-0.015113264795786563
PVSTLLLMPPN	11	Unmodified	_PVSTLLLMPPN_					0	0	0			REV__ENST00000357997.9_1_12:133302655-133302799:-|nuORF	REV__ENST00000357997.9_1_12:133302655-133302799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.779541015625	2	591.333567	1180.65258	-0.034968	-2.0678E-05	-3.362	-0.001988	-3.3969	-0.0020087	591.3316476622872	84.818	0.87682	84.681	84.406	85.283	-0.13789					33	20	3	0	0	0	0.024732	1	10214	10214		32.812	17.171	1	162310	+		61177	30844	42986	43048	66398	66398					0.0694808498230941
PVSWQALVL	9	Unmodified	_PVSWQALVL_					0	0	0			REV__ENSG00000165349|ENST00000374299|SLC7A3	REV__ENSG00000165349|ENST00000374299|SLC7A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.79290771484375	2	506.794935	1011.57532	-1.2623	-0.00063974	-4.3232	-0.002191	-5.5855	-0.0028307	506.7928567473784	44.161	1.3823	44.161	43.765	45.147	0					125	39	6	0	0	0	0.08613	5	4201	4156;4177;4189;4201;4213		115.46	16.084	1	120750000	+		61178	25876	42987	43049	66399;66400;66401;66402;66403	66402					0.06999234828265344
PVSWQALVL	9	Unmodified	_PVSWQALVL_					0	0	0			REV__ENSG00000165349|ENST00000374299|SLC7A3	REV__ENSG00000165349|ENST00000374299|SLC7A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.79229736328125	2	506.794935	1011.57532	-1.2594	-0.00063826	-4.2357	-0.0021466	-5.4951	-0.0027849	506.79291152499354	44.294	1.3029	44.149	43.781	45.083	-0.14471					125	37	6	0	0	0	0.13494	6	4162	4162;4171;4183;4195;4207;4275		102.77	20.468	1	119450000	+		61179	25876	42987	43049	66404;66405;66406;66407;66408;66409	66404					0.06999234828265344
PVSYLTLPSR	10	Unmodified	_PVSYLTLPSR_					0	0	0		ENST00000449707.5_1_2:219523523-219524103:-|nuORF;ENST00000432460.1_3_2:219523523-219523947:-|nuORF	ENST00000449707.5_1_2:219523523-219524103:-|nuORF	ENST00000449707.5_1_2:219523523-219524103:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.8115844726562	2	566.821681	1131.62881	0.079732	4.5194E-05	-0.42001	-0.00023807	-0.34028	-0.00019288	567.3226646491045	71.193	0.54095	71.193	70.948	71.489	0					28	13	3	0	0	0	0.03519	1	8597	8597		19.104	4.9664	1	262230			61180	14503	42988	43050	66410	66410					0.06825987540128153
PVTIPYPL	8	Unmodified	_PVTIPYPL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2820739746094	2	450.265479	898.516405	-0.61275	-0.0002759	3.8811	0.0017475	3.2683	0.0014716	450.2676022313671	50.855	0.86213	50.942	50.548	51.41	0.086632					41	23	3	0	0	0	0.027866	1	5359	5359		39.021	11.139	1	1250500			61181	10961	42989	43051	66411	66411					0.06308758533930359
PVTLGLLVA	9	Unmodified	_PVTLGLLVA_					0	0	0		ENSG00000254126|ENST00000643224|CD8B2	ENSG00000254126|ENST00000643224|CD8B2	ENSG00000254126|ENST00000643224|CD8B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.78790283203125	2	441.786579	881.558604	0.23631	0.0001044	2.723	0.001203	2.9593	0.0013074	441.7876811390936	42.861	0.74303	42.722	42.142	42.885	-0.13929					56	20	5	0	0	0	0.88411	1	3950	3950		33.516	0	1	12196000			61182	10875	42990	43052	66412	66412					0.11308733942325944
PVTLRSEP	8	Unmodified	_PVTLRSEP_					0	0	0			REV__nc|ENSG00000132470|P16144-3|ITGB4	REV__nc|ENSG00000132470|P16144-3|ITGB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2818298339844	2	449.753267	897.491981	0.12011	5.4018E-05	0.49348	0.00022195	0.61359	0.00027596	449.75326414033276	50.77	0.64804	50.621	50.322	50.97	-0.14916					27	18	2	0	0	0	0.027866	1	5343	5343		40.573	7.057	1	367930	+		61183	36661	42991	43053	66413	66413					0.03913498380427427
PVTMHYKV	8	Unmodified	_PVTMHYKV_					0	0	0		CARD11|p.L749M|1|0.24|ENSG00000198286|chr7:2922658-2922658|G/T|missense_variant	CARD11|p.L749M|1|0.24|ENSG00000198286|chr7:2922658-2922658|G/T|missense_variant	CARD11|p.L749M|1|0.24|ENSG00000198286|chr7:2922658-2922658|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7629089355469	2	487.760038	973.505523	-0.5789	-0.00028236	3.0849	0.0015047	2.506	0.0012223	487.76150281793866	36.933	0.7664	36.971	36.579	37.345	0.038044					58	19	5	0	0	0	0.65272	1	2941	2941		71.378	11.26	1	4671500			61184	215	42992	43054	66414	66414					0.017710328880070847
PVTMMPVTGG	10	Unmodified	_PVTMMPVTGG_					0	0	0		ENST00000475655.1_1_1:28655643-28657251:+|nuORF;ENSG00000130772|ENST00000373842|MED18	ENST00000475655.1_1_1:28655643-28657251:+|nuORF	ENST00000475655.1_1_1:28655643-28657251:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2815246582031	2	495.243363	988.472174	-0.12919	-6.3978E-05	0.38406	0.0001902	0.25488	0.00012623	495.2434352064074	24.83	0.43941	24.655	24.425	24.865	-0.17484					17	9	2	0	0	0	0.03519	1	1129	1129		42.396	10.866	1	184470			61185	4456	42993	43055	66415	66415					-0.02252336946185096
PVTMTGVLAI	10	Unmodified	_PVTMTGVLAI_					0	0	0		ENST00000479647.1_1_3:196664263-196668636:-|nuORF;ENST00000468923.5_1_3:196664263-196669374:-|nuORF	ENST00000479647.1_1_3:196664263-196668636:-|nuORF	ENST00000479647.1_1_3:196664263-196668636:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2903137207031	2	501.288628	1000.5627	0.66254	0.00033212	3.021	0.0015144	3.6835	0.0018465	501.2899933789471	88.245	1.3927	88.263	87.909	89.302	0.018555					71	32	4	0	0	0	1.0142	1	11052	11052		44.117	4.864	1	968330			61186	14890	42994	43056	66416	66416					0.06244455373735036
PVTREQLNH	9	Unmodified	_PVTREQLNH_					0	0	0		ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3271484375	2	547.291079	1092.56761	-0.17638	-9.6529E-05	-1.6277	-0.0008908	-1.804	-0.00098733	547.2902881763389	41.261	0.43014	41.138	40.725	41.155	-0.12317					18	11	2	0	0	0	0.022756	1	3673	3673		90.777	16.802	1	181590			61187	3802	42995	43057	66417	66417					0.025024755606864346
PVTRVARN	8	Unmodified	_PVTRVARN_					0	0	0		ENSG00000116191|ENST00000367635|RALGPS2;ENST00000480743.1_1_1:178855116-178863183:+|nuORF	ENSG00000116191|ENST00000367635|RALGPS2	ENSG00000116191|ENST00000367635|RALGPS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.77215576171875	2	456.772326	911.530098	0.69424	0.00031711	-0.97041	-0.00044326	-0.27617	-0.00012615	456.77181425540806	89.099	2.1744	89.078	88.266	90.44	-0.021645					106	51	4	0	0	0	1.0574	1	11202	11202		25.45	0	1	3725800			61188	3530	42996	43058	66418	66418					0.07079429085740685
PVTSTYSK	8	Unmodified	_PVTSTYSK_					0	0	0		nc|ENSG00000132356|Q13131-2|PRKAA1;ENSG00000132356|ENST00000397128|PRKAA1;ENST00000513152.1_1_5:40764586-40764871:-|nuORF	nc|ENSG00000132356|Q13131-2|PRKAA1	nc|ENSG00000132356|Q13131-2|PRKAA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7874755859375	2	441.732	881.449448	-0.70595	-0.00031184	3.0546	0.0013493	2.3487	0.0010375	441.7332960343053	40.778	0.98638	40.643	40.308	41.294	-0.13553					66	25	4	0	0	0	0.027866	1	3533	3533		40.573	27.613	1	3502700			61189	4595	42997	43059	66419	66419					0.003981032521892303
PVTWLFYLRA	10	Unmodified	_PVTWLFYLRA_					0	0	0			REV__ENSG00000196917|ENST00000432564|HCAR1	REV__ENSG00000196917|ENST00000432564|HCAR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.592529296875	3	422.572886	1264.69683	-0.04173	-1.7634E-05	2.3933	0.0010113	2.3516	0.00099371	422.57270000677926	50.391	0.50265	50.239	49.817	50.32	-0.1512					28	14	3	0	0	0	0.03519	1	5203	5203		11.097	0	1	86948	+		61190	28238	42998	43060	66420	66420					0.07506857190787741
PVVAGPRYSKG	11	Unmodified	_PVVAGPRYSKG_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.8190307617188	2	565.819473	1129.62439	-1.4445	-0.00081733	0.44265	0.00025046	-1.0019	-0.00056687	565.81965203722	40.271	0.85435	40.294	39.741	40.595	0.023006					42	23	2	0	0	0	0.98542	1	3470	3470		40.058	0.80534	1	1643500	+		61191	28801	42999	43061	66421	66421					0.06476523117203214
PVVAPSVDKGP	11	Unmodified	_PVVAPSVDKGP_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.774169921875	2	533.300581	1064.58661	-0.28376	-0.00015133	-0.38845	-0.00020716	-0.67221	-0.00035849	533.3001077711806	51.189	0.33799	50.912	50.778	51.116	-0.27643					14	8	2	0	0	0	0.024749	1	5226	5226		25.574	9.9322	1	164690			61192	9888	43000	43062	66422	66422					0.056900121317767116
PVVAWSDPT	9	Unmodified	_PVVAWSDPT_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.76947021484375	2	486.245275	970.475997	-1.0019	-0.00048718	-2.6321	-0.0012799	-3.6341	-0.001767	486.2437581626286	34.866	0.83207	34.917	34.479	35.311	0.050255					55	21	4	0	0	0	0.024487	1	2642	2642		17.365	0	1	290920			61193	1432	43001	43063	66423	66423					-0.010422078564829462
PVVEMCPE	8	Unmodified	_PVVEMCPE_					0	0	0			REV__TLR4|p.V30M|1|0.38|ENSG00000136869|chr9:117704560-117704560|G/A|missense_variant	REV__TLR4|p.V30M|1|0.38|ENSG00000136869|chr9:117704560-117704560|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2423400878906	2	452.201164	902.387775	-0.22263	-0.00010067	-0.29889	-0.00013516	-0.52152	-0.00023583	452.20151133272583	53.806	0.18208	53.659	53.529	53.711	-0.14723					8	4	3	0	0	0	0.027866	1	5803	5803		21.702	17.386	1	205470	+		61194	37699	43002	43064	66424	66424					-0.06732287762952183
PVVGLGSLCL	10	Unmodified	_PVVGLGSLCL_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27716064453125	2	479.275521	956.536489	0.1691	8.1046E-05	3.582	0.0017168	3.7511	0.0017978	479.2772522779822	81.24	2.5384	81.047	79.52	82.058	-0.19334					141	60	4	0	0	0	1.1166	1	9858	9858		30.504	2.6214	1	1990900			61195	4468	43003	43065	66425	66425					0.05648186202256511
PVVGRQIPA	9	Unmodified	_PVVGRQIPA_					0	0	0		ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.7846374511719	2	468.784902	935.55525	0.40501	0.00018986	-0.2886	-0.00013529	0.11641	5.457E-05	468.78456736545337	32.201	0.47812	32.009	31.771	32.249	-0.19261					26	10	3	0	0	0	0.78069	1	2201	2201		40.573	0	1	447550			61196	13803	43004	43066	66426	66426					0.08489483888320137
PVVGRQIPA	9	Unmodified	_PVVGRQIPA_					0	0	0		ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.784902	935.55525	-0.26734	-0.00012532	0.47678	0.00022351	0.20945	9.8186E-05	468.7849602370383	32.229	0.5084	32.229	31.91	32.418	0	0.14509	0.00028693	NaN	40.573	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188610			61197	13803	43004	43066							0.08489483888320137
PVVGRQIPA	9	Unmodified	_PVVGRQIPA_					0	0	0		ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.784902	935.55525	-0.14968	-7.0167E-05	0.97538	0.00045724	0.8257	0.00038708	468.785117992603	32.113	0.63033	32.125	31.782	32.413	0.011799	0.041287	0.0007544	NaN	40.573	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183150			61198	13803	43004	43066							0.08489483888320137
PVVGRQIPA	9	Unmodified	_PVVGRQIPA_					0	0	0		ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	468.784902	935.55525	0.24602	0.00011533	0.12622	5.9169E-05	0.37224	0.0001745	468.784697635059	32.002	0.59267	32.065	31.76	32.352	0.062885	-0.018819	-4.1755E-05	NaN	40.573	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188270			61199	13803	43004	43066							0.08489483888320137
PVVGRQIPA	9	Unmodified	_PVVGRQIPA_					0	0	0		ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.784902	935.55525	0.1711	8.0208E-05	-0.16316	-7.6489E-05	0.0079319	3.7184E-06	468.7846151172238	32.211	0.51789	31.974	31.74	32.258	-0.23666	-0.10974	-0.00031307	NaN	40.573	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412210			61200	13803	43004	43066							0.08489483888320137
PVVGRQIPA	9	Unmodified	_PVVGRQIPA_					0	0	0		ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	ENST00000410084.7_1_2:231578296-231578380:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.784902	935.55525	-0.57911	-0.00027148	0.53113	0.00024898	-0.047987	-2.2495E-05	468.7849228974066	32.258	0.54382	32.101	31.819	32.363	-0.15772	0.017053	0.00033787	NaN	40.573	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558960			61201	13803	43004	43066							0.08489483888320137
PVVIGIPAGAV	11	Unmodified	_PVVIGIPAGAV_					0	0	0		ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.26617431640625	2	496.810585	991.606617	0.13617	6.7652E-05	-0.65892	-0.00032736	-0.52275	-0.00025971	496.80989904089137	36.948	0.26874	36.885	36.709	36.978	-0.063385					9	6	2	0	0	0	0.024733	1	2968	2968		17.365	10.629	1	55803			61202	4243	43005	43067	66427	66427					0.1104780786236006
PVVLLIAGS	9	Unmodified	_PVVLLIAGS_					0	0	0			REV__ENST00000486433.5_1_12:56865273-56869736:-|nuORF;REV__ENSG00000135423|ENST00000311966|GLS2	REV__ENST00000486433.5_1_12:56865273-56869736:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7801513671875	2	434.778754	867.542954	0.074719	3.2486E-05	3.0656	0.0013329	3.1403	0.0013654	434.77992067571773	38.391	0.75215	38.173	37.957	38.71	-0.21849					69	20	4	0	0	0	0.97516	1	3174	3174		25.45	8.977	1	5000400	+		61203	33591;23541	43006	43068	66428	66428					0.10388447425293634
PVVPFDSLL	9	Unmodified	_PVVPFDSLL_					0	0	0			REV__SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant	REV__SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2602844238281	2	493.781493	985.548434	1.7986	0.00088813	2.1103	0.001042	3.9089	0.0019301	493.7824586337441	82.766	1.0269	82.656	82.168	83.195	-0.11006					52	23	4	0	0	0	0.024497	1	10368	10368		20.482	2.1574	1	823050	+		61204	25842	43007	43069	66429	66429					0.055081262171029266
PVVPGAGIPGA	11	Unmodified	_PVVPGAGIPGA_					0	0	0		nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-8|ELN	nc|ENSG00000049540|P15502-8|ELN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30535888671875	2	467.77146	933.528367	-0.16268	-7.6099E-05	0.12361	5.7823E-05	-0.03907	-1.8276E-05	467.7710990735018	53.28	0.49789	53.28	53.011	53.509	0					21	13	2	0	0	0	0.02474	1	5739	5739		31.955	7.7521	1	227140			61205	1128	43008	43070	66430	66430					0.05894375277148356
PVVPGFYHFS	10	Unmodified	_PVVPGFYHFS_					0	0	0			REV__ENSG00000128242|ENST00000406361|GAL3ST1	REV__ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.8075561523438	2	575.290017	1148.56548	4.3313	0.0024917	-0.55758	-0.00032077	3.7737	0.002171	575.2904443657358	17.918	0.22992	17.979	17.864	18.094	0.060358					6	4	2	0	0	0	0.03519	1	195	195		24.203	0	1	10445	+		61206	22969	43009	43071	66431	66431					-0.0028595317710369272
PVVPILLRK	9	Unmodified	_PVVPILLRK_					0	0	0			REV__ENSG00000171861|ENST00000304478|MRM3	REV__ENSG00000171861|ENST00000304478|MRM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3236083984375	2	517.85787	1033.70119	-0.015523	-8.0385E-06	1.8242	0.0009447	1.8087	0.00093666	517.8587896702677	64.113	0.14688	63.861	63.765	63.912	-0.25141					5	3	2	0	0	0	0.024541	1	7493	7493		12.207	0	1	82927	+		61207	26610	43010	43072	66432	66432					0.1856836640436086
PVVPMCWW	8	Unmodified	_PVVPMCWW_					0	0	0			REV__AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|5|2|sense	REV__AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|5|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.7821044921875	2	509.237884	1016.46122	-0.3301	-0.0001681	2.6678	0.0013586	2.3377	0.0011905	509.23917154199006	89.125	1.3545	88.997	88.405	89.76	-0.12774					62	31	3	0	0	0	0.027866	1	10877	10877		24.504	0.30126	1	291670	+		61208	19130	43011	43073	66433	66433					-0.04635694529827106
PVVQEPLSR	9	Unmodified	_PVVQEPLSR_					0	0	0			REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF	REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2990112304688	2	512.792924	1023.57129	-0.56954	-0.00029206	-0.16979	-8.7069E-05	-0.73934	-0.00037913	512.7927969333444	22.885	0.77961	22.7	22.189	22.969	-0.18539					29	16	4	0	0	0	0.024427	1	871	871		51.335	3.4199	1	116320	+		61209	32087	43012	43074	66434	66434					0.060451453345763184
PVVQGLVV	8	Unmodified	_PVVQGLVV_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9;ENST00000469134.1_1_1:52761607-52800448:+|nuORF	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MSMS	OPSCC_40_ClassI_Rep-2	5	405.7579650878906	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.14	113.64	114.64	-0.14448								0	0	0	1.2211	1	13724	13724		10.185	0	1				61210	6572	43013	43075	66435	66435					0.08871891736760062
PVVSALWWA	9	Unmodified	_PVVSALWWA_					0	0	0			REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|11|3|sense	REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|11|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.790283203125	2	514.781828	1027.5491	-0.4884	-0.00025142	4.1924	0.0021582	3.704	0.0019068	514.7842148249645	20.406	0.39144	20.301	20.178	20.569	-0.10477					12	7	2	0	0	0	0.024541	1	517	517		26.796	0	1	57425	+		61211	19127	43014	43076	66436	66436					0.03642965656808883
PVVVSQRGTV	10	Unmodified	_PVVVSQRGTV_					0	0	0			REV__nc|ENSG00000078900|O15350-12|TP73	REV__nc|ENSG00000078900|O15350-12|TP73	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.766845703125	2	521.306198	1040.59784	0.0061964	3.2302E-06	-2.7466	-0.0014318	-2.7404	-0.0014286	521.3047715495289	47.265	1.027	47.071	46.678	47.705	-0.19387					62	27	4	0	0	0	0.03519	1	4659	4659		31.53	0	1	458260	+		61212	20623	43015	43077	66437	66437					0.07916834225898128
PVVYGWQQIPI	11	Unmodified	_PVVYGWQQIPI_					0	0	0			REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7955017089844	3	433.908046	1298.70231	0.12078	5.2408E-05	0.86331	0.0003746	0.98409	0.000427	433.9085055095664	18.094	0.24769	17.887	17.714	17.962	-0.20669					6	4	2	0	0	0	0.024772	1	244	244		10.104	0	1	22580	+		61213	31177	43016	43078	66438	66438					0.06490535982607071
PVWCLHTV	8	Unmodified	_PVWCLHTV_					0	0	0			REV__ENST00000461942.5_1_9:116083780-116093329:-|nuORF	REV__ENST00000461942.5_1_9:116083780-116093329:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2818603515625	2	477.746931	953.479308	-0.078738	-3.7617E-05	2.8072	0.0013411	2.7285	0.0013035	477.7481826541356	50.492	0.83654	50.573	50.31	51.147	0.08099					43	23	3	0	0	0	0.027866	1	5209	5209		29.842	6.7991	1	1219700	+		61214	24600	43017	43079	66439	66439					0.0007076371651919544
PVWLACLI	8	Unmodified	_PVWLACLI_					0	0	0		ENST00000356956.5_2_6:160527199-160527481:+|nuORF	ENST00000356956.5_2_6:160527199-160527481:+|nuORF	ENST00000356956.5_2_6:160527199-160527481:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.75103759765625	2	457.762049	913.509546	-0.42873	-0.00019626	-0.53678	-0.00024572	-0.96551	-0.00044198	457.7619449746619	29.688	0.81712	29.691	29.591	30.408	0.0031357					22	19	2	0	0	0	0.027866	1	1853	1853		43.626	13.122	1	117740			61215	12681	43018	43080	66440	66440					0.04933122381737576
PVWRFLVV	8	Unmodified	_PVWRFLVV_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7779846191406	2	508.308013	1014.60147	0.99977	0.00050819	-1.4921	-0.00075847	-0.49237	-0.00025028	508.306884211659	19.131	0.34514	19.131	18.972	19.317	0					9	6	2	0	0	0	0.027866	1	393	393		19.36	7.1531	1	15660	+		61216	20912	43019	43081	66441	66441					0.09475548790419452
PVWRFLVV	8	Unmodified	_PVWRFLVV_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.308013	1014.60147	-0.16701	-8.4894E-05	-6.4728	-0.0032902	-6.6398	-0.0033751	508.30759315081536	19.276	0.68701	19.157	18.953	19.64	-0.11872	-0.044267	-0.0024808	NaN	19.36	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19862	+		61217	20912	43019	43081							0.09475548790419452
PVWRFLVV	8	Unmodified	_PVWRFLVV_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.308013	1014.60147	2.7654	0.0014057	-8.6066	-0.0043748	-5.8412	-0.0029691	508.30609686007267	19.249	0.44427	19.315	19.093	19.538	0.066195	0.11407	-0.0046501	NaN	19.36	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29616	+		61218	20912	43019	43081							0.09475548790419452
PVWSLLFF	8	Unmodified	_PVWSLLFF_					0	0	0		ENST00000447781.2_1_1:153352465-153352621:-|nuORF	ENST00000447781.2_1_1:153352465-153352621:-|nuORF	ENST00000447781.2_1_1:153352465-153352621:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27447509765625	2	504.781296	1007.54804	-0.24555	-0.00012395	2.2721	0.0011469	2.0265	0.001023	504.7817472140255	56.817	1.1088	56.913	56.395	57.504	0.096508					67	30	3	0	0	0	0.027866	1	6212	6212		37.028	0	1	1766500			61219	14473	43020	43082	66442	66442					0.0445675128790981
PVWSPQSQ	8	Unmodified	_PVWSPQSQ_					0	0	0			REV__ENST00000315150.9_1_3:128809825-128809957:-|nuORF	REV__ENST00000315150.9_1_3:128809825-128809957:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.26422119140625	2	464.729792	927.445031	0.17385	8.0794E-05	0.54917	0.00025521	0.72302	0.00033601	464.73075416461563	58.361	0.11417	58.361	58.304	58.418	0					4	2	2	0	0	0	0.027866	1	6613	6613		40.573	16.37	1	69328	+		61220	30255	43021	43083	66443	66443					-0.02159361170708962
PVWWFPAE	8	Unmodified	_PVWWFPAE_					0	0	0		ENST00000372022.5_1_9:136202994-136203057:-|nuORF	ENST00000372022.5_1_9:136202994-136203057:-|nuORF	ENST00000372022.5_1_9:136202994-136203057:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2669067382812	2	516.252903	1030.49125	-0.53597	-0.0002767	-4.2534	-0.0021959	-4.7894	-0.0024726	516.2505364093993	32.211	2.1999	32.223	31.127	33.327	0.011799					102	56	3	0	0	0	0.027866	1	2042	2042		37.028	4.2161	1	1326000			61221	13022	43022	43084	66444	66444					-0.022772962686531173
PVYAYQNY	8	Unmodified	_PVYAYQNY_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.7821350097656	2	509.23745	1016.46035	-0.57449	-0.00029255	3.7668	0.0019182	3.1923	0.0016256	509.2392321047594	89.163	1.4279	89	88.346	89.774	-0.1626					67	33	3	0	0	0	0.027866	1	10839	10839		44.531	16.649	1	264150	+		61222	27336	43023	43085	66445	66445					-0.04722494373538666
PVYEGVLYKP	10	Unmodified	_PVYEGVLYKP_					0	0	0		ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.8446655273438	2	582.818607	1163.62266	-0.18633	-0.00010859	-4.0628	-0.0023679	-4.2491	-0.0024765	582.8161923522633	68.656	0.966	68.425	67.794	68.76	-0.23048					19	16	2	0	0	0	0.03519	1	7976	7976		34.173	19.308	1	117890			61223	8352	43024	43086	66446	66446					0.04739469308628941
PVYEINEKN	9	Unmodified	_PVYEINEKN_					0	0	0		ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.7940063476562	2	553.279846	1104.54514	0.23774	0.00013154	2.466	0.0013644	2.7037	0.0014959	553.2812105385257	42.405	0.3818	42.405	42.187	42.569	0					15	10	2	0	0	0	0.0242	1	3926	3926		69.628	9.5094	1	135760			61224	10243	43025	43087	66447	66447					-0.0029516862757645868
PVYEINEKN	9	Unmodified	_PVYEINEKN_					0	0	0		ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.7938232421875	2	553.279846	1104.54514	-0.37533	-0.00020766	3.7401	0.0020693	3.3647	0.0018616	553.2822584444569	42.61	0.42356	42.47	42.243	42.667	-0.13929					16	11	2	0	0	0	0.0242	1	3931	3931		69.628	21.97	1	109030			61225	10243	43025	43087	66448	66448					-0.0029516862757645868
PVYGKAHW	8	Unmodified	_PVYGKAHW_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000462591.1_1_1:114438325-114438970:-|nuORF;ENST00000479285.5_1_1:114438325-114438811:-|nuORF	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7893981933594	2	479.250695	956.486836	0.29324	0.00014054	-4.1354	-0.0019819	-3.8421	-0.0018414	479.2485254145187	33.843	0.62899	33.619	33.404	34.033	-0.22412					25	15	2	0	0	0	0.027866	1	2447	2447		28.254	7.3073	1	672900			61226	4774	43026	43088	66449	66449					0.006852393084500363
PVYICIYCV	9	Unmodified	_PVYICIYCV_					0	0	0			REV__chr2:142883035-142885349|162|16.54|0.23|6.19|+|2|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	REV__chr2:142883035-142885349|162|16.54|0.23|6.19|+|2|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.8675537109375	2	536.763932	1071.51331	-0.5519	-0.00029624	0.41702	0.00022384	-0.13488	-7.2396E-05	536.7638921369199	17.531	0.29841	17.325	17.166	17.464	-0.20669					12	5	3	0	0	0	0.024541	1	183	183		29.842	12.477	1	61726	+		61227	19407	43027	43089	66450	66450					-0.01958575906724036
PVYVGVNIKG	10	Unmodified	_PVYVGVNIKG_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3038330078125	2	523.305667	1044.59678	0.29692	0.00015538	-4.2942	-0.0022472	-3.9973	-0.0020918	523.3032989158403	89.717	0.56227	89.58	89.273	89.836	-0.13761					34	12	3	0	0	0	1.0665	1	10965	10965		37.159	8.0096	1	910160			61228	724	43028	43090	66451	66451					0.0762661985700106
PWDVNSLTFG	10	Unmodified	_PWDVNSLTFG_					0	0	0		ENST00000481851.1_1_1:201465194-201465431:-|nuORF	ENST00000481851.1_1_1:201465194-201465431:-|nuORF	ENST00000481851.1_1_1:201465194-201465431:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3287353515625	2	568.274564	1134.53457	-0.51469	-0.00029249	0.34719	0.0001973	-0.1675	-9.5188E-05	568.274559584598	92.023	0.562	92.015	91.752	92.314	-0.0082932					28	13	3	0	0	0	0.03519	1	11658	11658		40.778	12.697	1	204360			61229	15237	43029	43091	66452	66452					-0.027311512820233474
PWFMAVFLGQ	10	Unmodified	_PWFMAVFLGQ_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	598.2800903320312	2	598.30207	1194.58959	-0.46018	-0.00027533	-1.9073	-0.0011412	-2.3675	-0.0014165	598.8012996570187	69.749	1.1149	69.499	68.908	70.023	-0.25063					64	26	4	0	0	0	0.03519	1	8177	8177		23.042	0	1	859980	+		61230	21385	43030	43092	66453	66453					7.563984922853706E-05
PWGAHLPL	8	Unmodified	_PWGAHLPL_					0	0	0		ENST00000480424.6_1_16:630268-633631:+|nuORF;nc|ENSG00000007541|Q9BRB3|PIGQ	ENST00000480424.6_1_16:630268-633631:+|nuORF	ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.721923828125	2	445.747788	889.481023	-0.11556	-5.1512E-05	0.092136	4.1069E-05	-0.023428	-1.0443E-05	445.7476941988717	32.646	0.6134	32.41	32.216	32.829	-0.23666					20	14	2	0	0	0	0.027866	1	2322	2322		24.504	5.144	1	105110			61231	15200	43031	43093	66454	66454					0.03186140796799464
PWGPGLVQRFR	11	Unmodified	_PWGPGLVQRFR_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.2471008300781	3	438.247285	1311.72002	-0.25193	-0.00011041	-0.60812	-0.00026651	-0.86005	-0.00037691	438.2471562212989	26.738	1.0588	26.715	26.283	27.342	-0.023088					94	26	6	0	0	0	1.0074	1	1360	1360		35.178	4.1101	1	8110600			61232	2203	43032	43094	66455	66455					0.07663296028113109
PWGRASTN	8	Unmodified	_PWGRASTN_					0	0	0			REV__ENST00000369476.7_1_X:154294051-154294272:-|nuORF	REV__ENST00000369476.7_1_X:154294051-154294272:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.25115966796875	2	444.719759	887.424964	-1.1701	-0.00052037	4.4406	0.0019748	3.2705	0.0014544	444.7212525764897	29.236	0.33528	29.236	29.112	29.447	0					12	8	2	0	0	0	0.027866	1	1799	1799		37.159	9.2769	1	203050	+		61233	31091	43033	43095	66456	66456					-0.023251121106795836
PWKHMWNMT	9	Unmodified	_PWKHMWNMT_					0	0	0		ENST00000427323.5_1_3:38390119-38397444:+|nuORF	ENST00000427323.5_1_3:38390119-38397444:+|nuORF	ENST00000427323.5_1_3:38390119-38397444:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.858642578125	3	410.856411	1229.5474	-0.55338	-0.00022736	3.8801	0.0015942	3.3267	0.0013668	410.85837937410065	30.245	0.88529	30.066	29.74	30.625	-0.17817					41	20	3	0	0	0	0.5973	1	1908	1908		52.937	10.599	1	1478300			61234	14105	43034	43096	66457	66457					-0.05818734695139938
PWKHMWNMT	9	Unmodified	_PWKHMWNMT_					0	0	0		ENST00000427323.5_1_3:38390119-38397444:+|nuORF	ENST00000427323.5_1_3:38390119-38397444:+|nuORF	ENST00000427323.5_1_3:38390119-38397444:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	410.856411	1229.5474	-0.039266	-1.6133E-05	3.787	0.0015559	3.7477	0.0015398	410.8582208436467	30.294	0.59433	30.145	29.835	30.429	-0.14952	0.032145	0.00014531	NaN	52.937	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1641000			61235	14105	43034	43096							-0.05818734695139938
PWLIGIRGG	9	Unmodified	_PWLIGIRGG_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.787841796875	2	484.787444	967.560336	-0.133	-6.4477E-05	2.3529	0.0011407	2.2199	0.0010762	484.7880038954233	42.928	0.61564	42.789	42.558	43.174	-0.13929					56	16	4	0	0	0	0.60698	1	3965	3965		52.299	5.5327	1	2014400	+		61236	26520	43035	43097	66458	66458					0.07525787750944346
PWLRTAGL	8	Unmodified	_PWLRTAGL_					0	0	0		ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	ENSG00000181396|ENST00000313056|OGFOD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2662658691406	2	457.266345	912.518136	-0.063831	-2.9188E-05	-4.0187	-0.0018376	-4.0825	-0.0018668	457.2643951564857	94.372	1.3211	94.224	93.738	95.059	-0.14771					69	30	5	0	0	0	0.77775	1	11607	11607		60.972	4.2509	1	1332600			61237	9039	43036	43098	66459	66459					0.05837812342565485
PWLVAGLRA	9	Unmodified	_PWLVAGLRA_					0	0	0			REV__ENST00000425967.7_1_8:38270519-38270621:-|nuORF	REV__ENST00000425967.7_1_8:38270519-38270621:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.7958068847656	2	491.795269	981.575986	-0.55332	-0.00027212	1.5042	0.00073978	0.95092	0.00046766	491.7958689020097	48.547	2.1449	48.271	48.004	50.149	-0.27598					170	57	4	0	0	0	0.90698	1	4907	4907		31.955	1.4512	1	3311200	+		61238	32264	43037	43099	66460	66460					0.08446074267976655
PWMAFKGE	8	Unmodified	_PWMAFKGE_					0	0	0		PRDM7|p.R109K|1|0.13|ENSG00000126856|chr16:90066886-90066886|C/T|missense_variant	PRDM7|p.R109K|1|0.13|ENSG00000126856|chr16:90066886-90066886|C/T|missense_variant	PRDM7|p.R109K|1|0.13|ENSG00000126856|chr16:90066886-90066886|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6461181640625	2	483.231113	964.447674	-0.30149	-0.00014569	3.8053	0.0018388	3.5038	0.0016931	483.2328217356695	48.168	0.54617	48.07	47.78	48.326	-0.097553					27	14	3	0	0	0	0.027866	1	4766	4766		31.955	16.622	1	359070			61239	18992	43038	43100	66461	66461					-0.03597229037404759
PWNHLCLGRGF	11	Unmodified	_PWNHLCLGRGF_					0	0	0		ENST00000403226.1_1_7:3180726-3198093:-|nuORF	ENST00000403226.1_1_7:3180726-3198093:-|nuORF	ENST00000403226.1_1_7:3180726-3198093:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.8851013183594	3	433.885358	1298.63425	1.3991	0.00060703	-1.8436	-0.00079989	-0.44449	-0.00019286	433.88441217866443	20.214	2.34	20.283	19.972	22.312	0.068901					101	47	3	0	0	0	1.0233	1	475	475		31.634	9.0546	1	270550			61240	13696	43039	43101	66462	66462					-0.003126121490595324
PWPFLAPVLLL	11	Unmodified	_PWPFLAPVLLL_					0	0	0		ENST00000379938.6_3_6:7250695-7251052:+|nuORF	ENST00000379938.6_3_6:7250695-7251052:+|nuORF	ENST00000379938.6_3_6:7250695-7251052:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.59326171875	3	422.593399	1264.75837	-0.0027145	-1.1471E-06	-1.6153	-0.0006826	-1.618	-0.00068375	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	1.0655	1	5227	5227		20.837	1.5745	1	16177000			61241	13289	43040	43102	66463	66463					0.13657788890100164
PWQHIHAM	8	Unmodified	_PWQHIHAM_					0	0	0			REV__ENST00000388833.7_1_16:67841261-67854833:+|nuORF	REV__ENST00000388833.7_1_16:67841261-67854833:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2774353027344	2	510.247629	1018.48071	-0.55796	-0.0002847	1.246	0.00063577	0.68804	0.00035107	510.24831097074735	35.547	0.24115	35.334	35.154	35.395	-0.21246					6	4	2	0	0	0	0.027866	1	2697	2697		21.702	0	1	66319	+		61242	31563	43041	43103	66464	66464					-0.02779602194709696
PWQNEMIET	9	Unmodified	_PWQNEMIET_					0	0	0		ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	ENSG00000198873|ENST00000392870|GRK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2788696289062	2	574.258056	1146.50156	-0.35024	-0.00020113	-0.35247	-0.00020241	-0.70271	-0.00040354	574.2589569504643	77.721	0.38277	77.559	77.311	77.694	-0.16196					10	8	2	0	0	0	0.024477	1	9228	9228		35.618	0	1	155000			61243	10232	43042	43104	66465	66465					-0.06583101396381608
PWRGIIPQ	8	Unmodified	_PWRGIIPQ_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;SMG1|p.L2055Ifs*14|1|0.32|ENSG00000157106|chr16:18845475-18845485|GGAGTCTTCAG/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6469421386719	2	483.779619	965.544686	0.22434	0.00010853	-0.10518	-5.0883E-05	0.11916	5.7648E-05	483.77925401923153	46.641	0.3873	46.544	46.473	46.86	-0.096649					14	10	2	0	0	0	0.027866	1	4517	4517		19.36	4.4951	1	496390			61244	6575	43043	43105	66466	66466					0.06053501233895986
PWTPLISG	8	Unmodified	_PWTPLISG_					0	0	0		ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.738037109375	2	435.739628	869.464704	-0.16465	-7.1745E-05	-3.8589	-0.0016815	-4.0235	-0.0017532	435.7377850759477	41.041	0.72783	40.813	40.508	41.236	-0.2278					53	18	4	0	0	0	0.68535	1	3586	3586		68.485	10.673	1	2376100			61245	11193	43044	43106	66467	66467					0.02475014840035783
PWTPSIPLL	9	Unmodified	_PWTPSIPLL_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.3057861328125	2	512.29731	1022.58007	-0.62929	-0.00032238	-2.5138	-0.0012878	-3.1431	-0.0016102	512.2958836706698	65.276	0.96918	65.276	64.944	65.913	0					67	26	4	0	0	0	0.024497	1	7812	7812		20.482	7.0278	1	4751900	+		61246	21857	43045	43107	66468	66468					0.0696811897103089
PYACTDLAVY	10	Unmodified	_PYACTDLAVY_					0	0	0		ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2590942382812	2	558.257525	1114.5005	0.55882	0.00031197	2.3575	0.0013161	2.9163	0.0016281	558.2590178270653	79.585	1.5747	79.339	78.947	80.522	-0.2465					97	37	6	0	0	0	0.62679	1	9485	9485		73.975	10.996	1	7994800			61247	9031	43046	43108	66469	66469					-0.05217315765253261
PYACTDLAVY	10	Unmodified	_PYACTDLAVY_					0	0	0		ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	ENSG00000181240|ENST00000321510|SLC25A41	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2589111328125	2	558.257525	1114.5005	-0.011466	-6.4012E-06	3.0293	0.0016911	3.0178	0.0016847	558.2592165836019	79.45	1.4616	79.3	78.943	80.405	-0.15051					77	34	3	0	0	0	0.75995	1	9470	9470		63.306	5.495	1	10237000			61248	9031	43046	43108	66470	66470					-0.05217315765253261
PYAHLFKI	8	Unmodified	_PYAHLFKI_					0	0	0			REV__ENSG00000181472|ENST00000325144|ZBTB2	REV__ENSG00000181472|ENST00000325144|ZBTB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7850341796875	2	494.78437	987.554188	-1.0681	-0.00052847	1.7263	0.00085415	0.65823	0.00032568	494.7843170801859	29.921	0.81883	30	29.646	30.465	0.078346					45	19	4	0	0	0	0.58212	1	1826	1826		77.944	8.3162	1	1498100	+		61249	27406	43047	43109	66471	66471					0.05991269519438447
PYATILEGNI	10	Unmodified	_PYATILEGNI_					0	0	0			REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2747192382812	2	545.792589	1089.57063	-0.97597	-0.00053268	4.0251	0.0021969	3.0491	0.0016642	545.7945759347294	79.071	0.74558	78.899	78.611	79.356	-0.17226					33	17	3	0	0	0	0.03519	1	9779	9779		52.937	5.0211	1	236840	+		61250	26032	43048	43110	66472	66472					0.029423058948623293
PYEEIRMM	8	2 Oxidation (M)	_PYEEIRM(Oxidation (M))M(Oxidation (M))_		PYEEIRM(1)M(1)		PYEEIRM(74)M(74)	0	0	2		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.7413330078125	2	550.741185	1099.46782	0.46304	0.00025501	-1.2384	-0.00068201	-0.77532	-0.000427	550.7404740185871	65.794	0.6505	65.794	65.494	66.145	0					43	16	4	0	0	0	0.6248	1	7821	7821		73.975	22.639	1	1484700			61251	5364	43049	43111	66473	66473		221;222			-0.07793846159756868
PYEEIRMM	8	2 Oxidation (M)	_PYEEIRM(Oxidation (M))M(Oxidation (M))_		PYEEIRM(1)M(1)		PYEEIRM(77)M(77)	0	0	2		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.7413940429688	2	550.741185	1099.46782	-0.44458	-0.00024485	0.097198	5.3531E-05	-0.34738	-0.00019132	550.7410682915164	65.831	0.57176	65.861	65.587	66.159	0.030106					36	14	3	0	0	0	0.59392	2	7749	7737;7749		76.847	28.931	1	1556600			61252	5364	43049	43111	66474;66475	66475		221;222			-0.07793846159756868
PYEEIRMM	8	2 Oxidation (M)	_PYEEIRM(Oxidation (M))M(Oxidation (M))_					0	0	2		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.741185	1099.46782	-0.30831	-0.0001698	0.54936	0.00030256	0.24105	0.00013276	550.7411900587078	66.143	0.27924	65.901	65.789	66.068	-0.24145	0.044349	0.00098194	NaN	76.847	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107170			61253	5364	43049	43111				221;222			-0.07793846159756868
PYEEIRMM	8	2 Oxidation (M)	_PYEEIRM(Oxidation (M))M(Oxidation (M))_					0	0	2		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.741185	1099.46782	-0.49384	-0.00027198	1.2677	0.00069819	0.77389	0.00042621	550.7416084654134	66.127	0.31537	65.876	65.806	66.121	-0.25111	0.01885	0.0017732	NaN	76.847	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74550			61254	5364	43049	43111				221;222			-0.07793846159756868
PYELRIEVQP	10	Unmodified	_PYELRIEVQP_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.3350219726562	2	622.337695	1242.66084	0.39219	0.00024407	-3.3438	-0.002081	-2.9517	-0.0018369	622.335346447666	110.26	0.23192	110.25	110.22	110.45	-0.009491					11	7	2	0	0	0	1.1329	1	13934	13934		27.882	0.83493	1	54793			61255	4506	43050	43112	66476	66476					0.04921355223291357
PYEWKNLD	8	Unmodified	_PYEWKNLD_					0	0	0		ENST00000520609.5_1_8:63930016-63936547:-|nuORF;ENSG00000137563|ENST00000260118|GGH	ENST00000520609.5_1_8:63930016-63936547:-|nuORF	ENST00000520609.5_1_8:63930016-63936547:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.7986450195312	2	532.756007	1063.49746	0.068811	3.666E-05	0.8727	0.00046494	0.94151	0.00050159	532.7562940462508	99.371	0.6637	99.367	98.988	99.652	-0.0038834					21	14	2	0	0	0	0.027866	1	12603	12603		76.847	0	1	73215			61256	5137	43051	43113	66477	66477					-0.031748228277592716
PYEYKIVI	8	Unmodified	_PYEYKIVI_					0	0	0		ENST00000524636.1_1_11:30516841-30557583:-|nuORF;ENST00000525519.1_1_11:30473620-30557628:-|nuORF;nc|ENSG00000066382|Q15777-2|MPPED2;ENSG00000066382|ENST00000358117|MPPED2;ENSG00000186732|ENST00000443721|MPPED1;nc|ENSG00000186732|O15442-2|MPPED1	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	512.7866821289062	2	512.789318	1023.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.46	1	71.47	70.97	71.97	0.010735								0	0	0	0.38842	1	8584	8584		68.485	2.6815	1				61257	1338	43052	43114	66478	66478					0.05324412734148609
PYFIQSPL	8	Unmodified	_PYFIQSPL_					0	0	0		ENST00000521314.5_1_16:67198707-67203685:+|nuORF;ENSG00000102878|ENST00000521374|HSF4	ENST00000521314.5_1_16:67198707-67203685:+|nuORF	ENST00000521314.5_1_16:67198707-67203685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.7623596191406	2	482.760561	963.506569	0.12105	5.8439E-05	3.5923	0.0017342	3.7134	0.0017927	482.76214071742976	87.716	2.8054	87.537	86.393	89.198	-0.17875					142	67	3	0	0	0	0.71833	1	10618	10618		65.803	7.9919	1	829440			61258	2436	43053	43115	66479	66479					0.023355705285666772
PYFPLTVHSL	10	Unmodified	_PYFPLTVHSL_					0	0	0			REV__ENSG00000185532|ENST00000373980|PRKG1	REV__ENSG00000185532|ENST00000373980|PRKG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	587.325439453125	2	587.318774	1172.623	0.65397	0.00038409	0.12642	7.4247E-05	0.78038	0.00045833	587.3188953210638	78.808	1.0755	78.827	78.483	79.558	0.018677					39	25	3	0	0	0	0.03519	1	9704	9704		40.778	1.5253	1	907670	+		61259	27770	43054	43116	66480	66480					0.043588890284581794
PYGAPYQL	8	Unmodified	_PYGAPYQL_					0	0	0			REV__ENSG00000147854|ENST00000276893|UHRF2	REV__ENSG00000147854|ENST00000276893|UHRF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.2663269042969	2	454.729261	907.443968	1.7708	0.00080521	-2.1454	-0.00097559	-0.37467	-0.00017037	454.72794994358486	63.476	0.35774	63.53	63.41	63.768	0.054104					14	9	2	0	0	0	0.027866	1	7329	7329		69.093	4.8857	1	138920	+		61260	24584	43055	43117	66481	66481					-0.013455755396307723
PYGAPYQL	8	Unmodified	_PYGAPYQL_					0	0	0			REV__ENSG00000147854|ENST00000276893|UHRF2	REV__ENSG00000147854|ENST00000276893|UHRF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.729261	907.443968	0.27565	0.00012534	-1.0617	-0.0004828	-0.78608	-0.00035746	454.72833548947114	63.822	0.35873	63.571	63.372	63.73	-0.25141	0.020456	0.00054986	NaN	69.093	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144770	+		61261	24584	43055	43117							-0.013455755396307723
PYGIMNYIA	9	Unmodified	_PYGIMNYIA_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7473754882812	2	521.257328	1040.5001	-0.22615	-0.00011788	2.5646	0.0013368	2.3385	0.0012189	521.258550821342	35.302	0.46837	35.09	34.886	35.354	-0.21246					22	10	3	0	0	0	0.024487	1	2704	2704		24.203	0	1	273540	+		61262	36597	43056	43118	66482	66482					-0.018526906944543953
PYGIMNYIA	9	Unmodified	_PYGIMNYIA_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.257328	1040.5001	-1.0685	-0.00055696	7.7286	0.0040286	6.6601	0.0034716	521.2614163160522	35.088	0.57122	35.088	34.629	35.2	0	0.074092	0.003053	NaN	11.511	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119400	+		61263	36597	43056	43118							-0.018526906944543953
PYGIMNYIA	9	Unmodified	_PYGIMNYIA_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.257328	1040.5001	-0.88389	-0.00046073	7.7416	0.0040354	6.8578	0.0035747	521.2611197268369	34.823	0.49733	34.801	34.551	35.049	-0.021767	-0.21233	0.0030667	NaN	11.511	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89584	+		61264	36597	43056	43118							-0.018526906944543953
PYGIMNYIA	9	Unmodified	_PYGIMNYIA_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.257328	1040.5001	-0.77942	-0.00040628	7.2835	0.0037966	6.5041	0.0033903	521.2610528421349	34.901	0.40984	34.952	34.682	35.091	0.050251	-0.062034	0.0025891	NaN	11.511	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135660	+		61265	36597	43056	43118							-0.018526906944543953
PYGIMNYIA	9	Unmodified	_PYGIMNYIA_					0	0	0			REV__nc|ENSG00000117298|P42892-3|ECE1	REV__nc|ENSG00000117298|P42892-3|ECE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.257328	1040.5001	-0.46455	-0.00024215	2.9151	0.0015195	2.4506	0.0012774	521.2585216200855	35.353	0.42191	35.138	34.874	35.296	-0.21555	0.12398	-0.001965	NaN	11.511	29	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278270	+		61266	36597	43056	43118							-0.018526906944543953
PYGLAVLLGGD	11	Unmodified	_PYGLAVLLGGD_					0	0	0			REV__ENST00000368977.8_1_6:108616162-108645125:+|nuORF	REV__ENST00000368977.8_1_6:108616162-108645125:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2781982421875	2	537.795132	1073.57571	0.31272	0.00016818	2.0993	0.001129	2.412	0.0012972	538.2977238093354	84.157	0.85887	83.998	83.714	84.573	-0.15868					24	19	2	0	0	0	0.024783	1	10251	10251		42.396	5.3677	1	56549	+		61267	31078	43057	43119	66483	66483					0.0418660975747116
PYGLDVPNT	9	Unmodified	_PYGLDVPNT_					0	0	0		ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7515869140625	2	488.242732	974.470912	-1.0664	-0.00052069	1.6397	0.00080056	0.57322	0.00027987	488.24320256199667	75.225	0.52108	75.225	74.995	75.516	0					24	13	2	0	0	0	0.023239	1	9236	9236		54.776	0	1	223840			61268	10482	43058	43120	66484	66484					-0.01734511719087095
PYGRRIIPE	9	Unmodified	_PYGRRIIPE_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.7736206054688	2	550.81419	1099.61383	-0.58727	-0.00032348	3.7911	0.0020882	3.2038	0.0017647	550.8166367364366	54.834	0.17961	54.932	54.769	54.949	0.098015					6	4	2	0	0	0	0.024412	1	5944	5944		31.955	7.7521	1	63339			61269	1599	43059	43121	66485	66485					0.06800540462791105
PYGRRRSLM	9	Unmodified	_PYGRRRSLM_					0	0	0			REV__ENST00000352131.7_1_7:73654305-73654350:-|nuORF	REV__ENST00000352131.7_1_7:73654305-73654350:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.7935791015625	2	568.311292	1134.60803	0.12764	7.2541E-05	-1.4498	-0.00082391	-1.3221	-0.00075137	568.3113583165335	73.143	0.65412	72.871	72.475	73.129	-0.27126					43	15	5	0	0	0	0.024457	1	8849	8849		45.952	0	1	246500	+		61270	30735	43060	43122	66486	66486					0.04611118679486026
PYGVMVMMY	9	Unmodified	_PYGVMVMMY_					0	0	0			REV__nc|ENSG00000171551|O95672-2|ECEL1	REV__nc|ENSG00000171551|O95672-2|ECEL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8165283203125	2	545.742142	1089.46973	-0.89923	-0.00049075	-3.4224	-0.0018678	-4.3216	-0.0023585	546.2407769994928	67.174	0.40712	66.936	66.837	67.244	-0.23862					11	9	2	0	0	0	0.024389	1	7745	7745		39.021	9.18	1	292830	+		61271	26580	43061	43123	66487	66487					-0.07142508675497083
PYIELLLQ	8	Unmodified	_PYIELLLQ_					0	0	0			REV__nc|ENSG00000280987|P43243-2|MATR3;REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	REV__nc|ENSG00000280987|P43243-2|MATR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.78741455078125	2	494.789318	987.564084	-0.53009	-0.00026228	-3.5121	-0.0017378	-4.0422	-0.002	494.78830879190554	30.342	0.9868	30.351	29.637	30.624	0.0086689					53	23	4	0	0	0	0.81662	1	1907	1907		57.811	4.4598	1	1135500	+		61272	19968;32049	43062	43124	66488	66488					0.06980412734139918
PYIELLLQ	8	Unmodified	_PYIELLLQ_					0	0	0			REV__nc|ENSG00000280987|P43243-2|MATR3;REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	REV__nc|ENSG00000280987|P43243-2|MATR3	MSMS	OPSCC_39_ClassI_Rep-3	3	494.7857666015625	2	494.789318	987.564084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.972	1	30.051	29.551	30.551	0.078344								0	0	0	0.38842	1	1836	1836		68.485	2.6815	1		+		61273	19968;32049	43062	43124	66489	66489					0.06980412734139918
PYIICNTGI	9	Carbamidomethyl (C)	_PYIIC(Carbamidomethyl (C))NTGI_	PYIIC(1)NTGI		PYIIC(71)NTGI		0	1	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7667236328125	2	525.76806	1049.52157	-0.58049	-0.0003052	-3.3791	-0.0017766	-3.9595	-0.0020818	525.7661099532518	31.109	0.66794	30.868	30.627	31.295	-0.24109					43	16	4	0	0	0	0.33245	1	2040	2040		71.296	13.484	1	1238200	+		61274	26984	43063	43125	66490	66490	355				-0.001213056657661582
PYIICNTGI	9	Carbamidomethyl (C)	_PYIIC(Carbamidomethyl (C))NTGI_	PYIIC(1)NTGI		PYIIC(82)NTGI		0	1	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.767333984375	2	525.76806	1049.52157	-0.18077	-9.5045E-05	-3.9116	-0.0020566	-4.0924	-0.0021516	525.7658376524748	31.072	0.97741	30.92	30.597	31.574	-0.15231					52	24	3	0	0	0	0.25032	1	2023	2023		82.305	22.011	1	1406200	+		61275	26984	43063	43125	66491	66491	355				-0.001213056657661582
PYIKKSNLI	9	Unmodified	_PYIKKSNLI_					0	0	0			REV__ENST00000531371.5_1_11:104776194-104789795:-|nuORF	REV__ENST00000531371.5_1_11:104776194-104789795:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3273315429688	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.97455	1	12659	12659		25.574	1.0549	1	22988000	+		61276	34554	43064	43126	66492	66492					0.10939479408125408
PYIPAAPSSSY	11	Unmodified	_PYIPAAPSSSY_					0	0	0		ENST00000475153.5_1_7:148851044-148851110:+|nuORF	ENST00000475153.5_1_7:148851044-148851110:+|nuORF	ENST00000475153.5_1_7:148851044-148851110:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7817993164062	2	576.782222	1151.54989	-1.2871	-0.00074239	1.3528	0.00078029	0.065701	3.7895E-05	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	0.98904	1	7567	7567		39.253	0	1	1856800			61277	15050	43065	43127	66493	66493					-0.019822844848022214
PYKGLRTTK	9	Unmodified	_PYKGLRTTK_					0	0	0			REV__nc|ENSG00000073464|P51793-2|CLCN4	REV__nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.31640625	2	532.316566	1062.61858	-0.69178	-0.00036824	0.26506	0.00014109	-0.42672	-0.00022715	532.3166006205864	21.986	0.72278	21.784	21.517	22.24	-0.20199					40	14	4	0	0	0	0.75397	1	733	733		42.396	9.5837	1	707040	+		61278	20500	43066	43128	66494	66494					0.08977424605541273
PYKPNYSLN	9	Unmodified	_PYKPNYSLN_					0	0	0		ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	ENSG00000110048|ENST00000263847|OSBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.2520751953125	2	548.277106	1094.53966	-0.92745	-0.0005085	-3.5715	-0.0019582	-4.499	-0.0024667	548.2746139717358	52.33	1.1167	52.422	51.823	52.939	0.091938					84	28	4	0	0	0	0.0242	1	5491	5491		51.193	8.3284	1	1507500			61279	3016	43067	43129	66495	66495					-0.0038284741938241496
PYKSKTID	8	Unmodified	_PYKSKTID_					0	0	0		nc|ENSG00000104415|O95388-3|CCN4;nc|ENSG00000104415|O95388-5|CCN4;nc|ENSG00000104415|O95388-2|CCN4;ENSG00000104415|ENST00000250160|CCN4	nc|ENSG00000104415|O95388-3|CCN4	nc|ENSG00000104415|O95388-3|CCN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2898254394531	2	476.260925	950.507297	0.60342	0.00028738	-3.018	-0.0014373	-2.4145	-0.00115	476.2591043639508	58.463	0.41208	58.554	58.333	58.745	0.091217					16	10	2	0	0	0	0.027866	1	6573	6573		19.36	3.7182	1	87163			61280	2569	43068	43130	66496	66496					0.030063651776117695
PYKSQSRSE	9	Unmodified	_PYKSQSRSE_					0	0	0			REV__TRA2A|p.S20Y|1|0.17|ENSG00000164548|chr7:23521818-23521818|G/T|missense_variant	REV__TRA2A|p.S20Y|1|0.17|ENSG00000164548|chr7:23521818-23521818|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.2874145507812	2	541.26727	1080.51999	-0.71902	-0.00038918	1.0303	0.00055768	0.3113	0.0001685	541.2677771747109	69.093	0.68633	69.093	68.861	69.547	0					41	17	3	0	0	0	0.024539	1	8280	8280		35.618	7.736	1	991850	+		61281	37727	43069	43131	66497	66497					-0.017052234301445424
PYLLEFLIL	9	Unmodified	_PYLLEFLIL_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2796020507812	2	560.836268	1119.65798	0.11339	6.3592E-05	3.9218	0.0021995	4.0352	0.0022631	560.8404365796869	86.137	0.13168	85.95	85.859	85.991	-0.18696					4	2	2	0	0	0	0.024541	1	10436	10436		12.959	0	1	21092	+		61282	19737	43070	43132	66498	66498					0.10294131836417364
PYLLGIVASI	10	Unmodified	_PYLLGIVASI_					0	0	0			REV__ENST00000467223.5_1_2:118846216-118865895:+|nuORF	REV__ENST00000467223.5_1_2:118846216-118865895:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3026123046875	2	523.318243	1044.62193	0.11418	5.9753E-05	2.4968	0.0013066	2.611	0.0013664	523.3192676114809	87.531	0.87959	87.393	86.787	87.667	-0.13734					27	20	2	0	0	0	0.03519	1	10560	10560		53.351	2.016	1	123940	+		61283	33066	43071	43133	66499	66499					0.10140674659578508
PYLLGPKKD	9	Unmodified	_PYLLGPKKD_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2844848632812	2	515.800217	1029.58588	-0.60525	-0.00031219	-0.084805	-4.3742E-05	-0.69005	-0.00035593	515.8003071612562	82.986	1.0678	82.986	82.113	83.18	0					29	24	2	0	0	0	0.024263	1	10289	10289		51.335	0	1	50866			61284	713	43072	43134	66500	66500					0.07227217482704873
PYLNKLQAL	9	Unmodified	_PYLNKLQAL_					0	0	0			REV__ENSG00000166888|ENST00000300134|STAT6	REV__ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.786865234375	2	530.313492	1058.61243	-1.083	-0.00057435	-3.4998	-0.001856	-4.5828	-0.0024303	530.311195038529	90.692	0.50077	90.567	90.332	90.833	-0.12512					21	11	3	0	0	0	0.024457	1	11146	11146		45.952	4.5253	1	98645	+		61285	26074	43073	43135	66501	66501					0.08546906374044738
PYLSLRTSL	9	Unmodified	_PYLSLRTSL_					0	0	0			REV__ENST00000490188.1_1_2:219524996-219525089:+|nuORF	REV__ENST00000490188.1_1_2:219524996-219525089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.3034057617188	2	525.303124	1048.5917	-0.14172	-7.4444E-05	-0.31153	-0.00016365	-0.45325	-0.00023809	525.3028768859093	63.908	1.1946	63.657	63.084	64.278	-0.25141					95	32	4	0	0	0	0.2508	1	7476	7476		82.241	2.5279	1	5748100	+		61286	33697	43074	43136	66502	66502					0.06934315994385543
PYLTQKNLI	9	Unmodified	_PYLTQKNLI_					0	0	0		nc|ENSG00000165568|Q96JD6-4|AKR1E2;ENSG00000165568|ENST00000298375|AKR1E2	nc|ENSG00000165568|Q96JD6-4|AKR1E2	nc|ENSG00000165568|Q96JD6-4|AKR1E2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3163452148438	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.56934	1	11502	11502		54.776	3.5836	1	11705000			61287	7433	43075	43137	66503	66503					0.08222889028479585
PYLVIVEQP	9	Unmodified	_PYLVIVEQP_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2992553710938	2	529.30005	1056.58555	-0.72694	-0.00038477	-3.5556	-0.001882	-4.2825	-0.0022667	529.2978580924387	30.732	1.0476	30.742	30.415	31.463	0.0098057					35	24	2	0	0	0	0.80658	1	2001	2001		38.806	0.99462	1	2534700			61288	1601	43076	43138	66504	66504					0.059517977628502194
PYLWARLDRKP	11	Unmodified	_PYLWARLDRKP_					0	0	0		ENST00000552803.5_1_12:88429407-88437530:+|nuORF;ENST00000548511.5_1_12:88429578-88437530:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF;ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF	ENST00000552803.5_1_12:88429407-88437530:+|nuORF	ENST00000552803.5_1_12:88429407-88437530:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2674865722656	3	472.269978	1413.7881	3.2764	0.0015474	1.7241	0.00081424	5.0005	0.0023616	472.27077352224944	18.219	0.39871	17.977	17.776	18.175	-0.24256					18	7	3	0	0	0	1.0739	1	264	264		18.531	0	1	56775			61289	4721	43077	43139	66505	66505					0.09776120888113837
PYLYKKYK	8	Unmodified	_PYLYKKYK_					0	0	0		AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|11|3|sense	AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|11|3|sense	AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|11|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7462158203125	2	551.81841	1101.62227	-0.13087	-7.2218E-05	-1.2292	-0.00067832	-1.3601	-0.00075053	551.817466221397	39.283	0.52142	39.057	38.874	39.395	-0.2257					27	13	3	0	0	0	0.027866	1	3348	3348		26.796	7.6926	1	352440			61290	67	43078	43140	66506	66506					0.07552094379411756
PYLYKKYK	8	Unmodified	_PYLYKKYK_					0	0	0		AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|11|3|sense	AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|11|3|sense	AluJb_dup74892|chr10:104257343-104257640:-|1.067392316553859|0.0579806206136352|4.2|517.0|11|3|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	551.81841	1101.62227	-0.90184	-0.00049765	-0.54559	-0.00030107	-1.4474	-0.00079872	551.8178024593739	39.128	0.47036	38.963	38.795	39.265	-0.16458	-0.17458	-1.3772E-05	NaN	19.36	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393910			61291	67	43078	43140							0.07552094379411756
PYMGNAVPPPY	11	Oxidation (M)	_PYM(Oxidation (M))GNAVPPPY_		PYM(1)GNAVPPPY		PYM(66)GNAVPPPY	0	0	1			REV__ENSG00000132471|ENST00000254806|WBP2	REV__ENSG00000132471|ENST00000254806|WBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.2796020507812	2	611.284074	1220.5536	-0.59467	-0.00036351	0.60387	0.00036913	0.0091984	5.6229E-06	611.2838755315152	63.083	0.6012	62.9	62.671	63.272	-0.18386					33	14	4	0	0	0	0.6558	1	7112	7112		66.429	17.218	1	862800	+		61292	23284	43079	43141	66507	66507		691			-0.04785937982614996
PYNINSGYY	9	Unmodified	_PYNINSGYY_					0	0	0			REV__ENSG00000185002|ENST00000332958|RFX6	REV__ENSG00000185002|ENST00000332958|RFX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.81640625	2	545.745639	1089.47673	0.57858	0.00031576	2.7448	0.001498	3.3234	0.0018137	545.7470010228798	67.974	0.87327	67.719	67.236	68.109	-0.25516					35	20	2	0	0	0	0.024405	1	7776	7776		35.618	3.6634	1	372930	+		61293	27721	43080	43142	66508	66508					-0.06443413207421145
PYNLLTEIL	9	Unmodified	_PYNLLTEIL_					0	0	0			REV__ENSG00000198932|ENST00000537097|GPRASP1	REV__ENSG00000198932|ENST00000537097|GPRASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2879028320312	2	538.305332	1074.59611	0.024584	1.3234E-05	-1.5792	-0.00085012	-1.5547	-0.00083688	538.3049360934101	89.18	1.3045	89.158	88.61	89.914	-0.021645					64	30	4	0	0	0	0.022083	1	11278	11278		76.774	7.1465	1	828520	+		61294	28524	43081	43143	66509	66509					0.0617978041727838
PYPFGIDPIW	10	Unmodified	_PYPFGIDPIW_					0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF;ENSG00000105929|ENST00000310018|ATP6V0A4;nc|ENSG00000033627|Q93050-1|ATP6V0A1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5517272949219	3	402.206092	1203.59645	1.1508	0.00046286	-4.1261	-0.0016595	-2.9753	-0.0011967	402.2043988499751	56.217	0.57545	56	55.737	56.313	-0.21607					34	14	3	0	0	0	0.03519	1	6047	6047		41.427	9.3925	1	462190			61295	3058;2736;1024	43082	43144	66510	66510					0.002792001371517472
PYPFILLD	8	Unmodified	_PYPFILLD_					0	0	0			REV__ENST00000592923.5_1_19:11649661-11650145:+|nuORF	REV__ENST00000592923.5_1_19:11649661-11650145:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.258056640625	2	489.270761	976.52697	-0.34403	-0.00016833	-3.5047	-0.0017148	-3.8488	-0.0018831	489.26900079348826	75.454	0.9633	75.209	74.549	75.512	-0.24455					35	24	2	0	0	0	0.027866	1	9227	9227		44.531	3.9584	1	493240	+		61296	35755	43083	43145	66511	66511					0.03776741188369215
PYPILLLSV	9	Unmodified	_PYPILLLSV_					0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7989196777344	2	507.815336	1013.61612	0.51086	0.00025942	-4.3184	-0.0021929	-3.8075	-0.0019335	507.81298733000784	72.302	0.65626	72.021	71.769	72.425	-0.28124					39	16	3	0	0	0	0.4855	1	8764	8764		60.294	16.177	1	1386600	+		61297	36990	43084	43146	66512	66512					0.10985576147913889
PYPIPHMET	9	Unmodified	_PYPIPHMET_					0	0	0			REV__ENSG00000094661|ENST00000641398|OR1I1	REV__ENSG00000094661|ENST00000641398|OR1I1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.79541015625	2	542.760235	1083.50592	-1.3468	-0.000731	-3.9427	-0.0021399	-5.2895	-0.0028709	542.757901449199	40.496	0.48926	40.519	40.275	40.764	0.023006					20	13	2	0	0	0	0.024487	1	3476	3476		24.203	0	1	228670	+		61298	20948	43085	43147	66513	66513					-0.03249592182805827
PYPLPKQDL	9	Unmodified	_PYPLPKQDL_					0	0	0		ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	ERAP1|p.A776Pfs*43|1|0.18|ENSG00000164307|chr5:96781814-96781814|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7649536132812	2	535.797675	1069.5808	-1.3714	-0.00073479	3.6225	0.0019409	2.2511	0.0012061	536.3022839952225	90.33	0.5407	90.33	90.054	90.594	0					14	12	2	0	0	0	0.024447	1	11441	11441		40.778	19.076	1	60875			61299	7257	43086	43148	66514	66514					0.04878913620086678
PYPRARARL	9	Unmodified	_PYPRARARL_					0	0	0		ENST00000568202.5_1_16:5075546-5083878:-|nuORF;nc|ENSG00000103174|Q9UK23-2|NAGPA;ENSG00000103174|ENST00000312251|NAGPA;nc|ENSG00000103174|Q9UK23-3|NAGPA	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	ENST00000568202.5_1_16:5075546-5083878:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3264770507812	2	550.327799	1098.64105	0.081598	4.4906E-05	-0.90527	-0.00049819	-0.82367	-0.00045329	550.3276499365805	98.961	0.92738	98.957	98.596	99.523	-0.0038834					49	20	3	0	0	0	0.72875	1	12570	12570		44.117	4.864	1	255790			61300	2476	43087	43149	66515	66515					0.09567068793830913
PYPRSSSLW	9	Unmodified	_PYPRSSSLW_					0	0	0		ENST00000393437.7_2_2:100900079-100900241:-|nuORF	ENST00000393437.7_2_2:100900079-100900241:-|nuORF	ENST00000393437.7_2_2:100900079-100900241:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7725830078125	2	546.777274	1091.53999	0.039404	2.1545E-05	1.5636	0.00085493	1.603	0.00087647	546.777857713612	81.439	0.49852	81.21	80.939	81.437	-0.2289					25	11	3	0	0	0	0.024405	1	9755	9755		44.117	12.162	1	287970			61301	13447	43088	43150	66516	66516					-0.002114276995371256
PYPSKRLSV	9	Unmodified	_PYPSKRLSV_					0	0	0			REV__ENST00000502447.1_1_5:179956276-179991564:+|nuORF	REV__ENST00000502447.1_1_5:179956276-179991564:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.27880859375	2	523.803291	1045.59203	-0.37812	-0.00019806	0.15785	8.2682E-05	-0.22027	-0.00011538	523.8033297519428	56.732	0.72243	56.565	56.245	56.967	-0.1672					42	18	3	0	0	0	0.024319	1	6169	6169		56.721	10.769	1	1291800	+		61302	33927	43089	43151	66517	66517					0.07105735714230832
PYPSKRLSV	9	Unmodified	_PYPSKRLSV_					0	0	0			REV__ENST00000502447.1_1_5:179956276-179991564:+|nuORF	REV__ENST00000502447.1_1_5:179956276-179991564:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.803291	1045.59203	-0.74045	-0.00038785	0.16369	8.5744E-05	-0.57675	-0.0003021	523.8030706673861	56.834	0.32182	56.67	56.423	56.745	-0.16431	0.069369	0.00060643	NaN	56.721	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292210	+		61303	33927	43089	43151							0.07105735714230832
PYPTQKNTF	9	Unmodified	_PYPTQKNTF_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8118896484375	2	548.277106	1094.53966	-0.20711	-0.00011356	-2.536	-0.0013904	-2.7431	-0.001504	548.275610102805	58.433	0.66314	58.256	57.931	58.595	-0.17791					32	15	3	0	0	0	0.024506	1	6397	6397		23.042	3.0457	1	272250			61304	12985	43090	43152	66518	66518					-0.0038284741938241496
PYPTQKNTF	9	Unmodified	_PYPTQKNTF_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.277106	1094.53966	-0.074468	-4.0829E-05	-4.2162	-0.0023116	-4.2906	-0.0023525	548.2746882506812	58.467	0.87828	58.467	57.982	58.86	0	0.17589	-0.00083752	NaN	27.882	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192050			61305	12985	43090	43152							-0.0038284741938241496
PYPTQKNTF	9	Unmodified	_PYPTQKNTF_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.277106	1094.53966	-0.52516	-0.00028794	-3.3191	-0.0018198	-3.8443	-0.0021077	548.2751513467068	58.21	0.7274	58.301	57.944	58.671	0.091217	0.010121	0.00014616	NaN	27.882	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218290			61306	12985	43090	43152							-0.0038284741938241496
PYPTQKNTF	9	Unmodified	_PYPTQKNTF_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.277106	1094.53966	-0.081613	-4.4747E-05	-2.8989	-0.0015894	-2.9805	-0.0016341	548.2752390287119	58.37	0.28214	58.18	58.056	58.338	-0.19017	-0.11078	0.00060696	NaN	27.882	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310710			61307	12985	43090	43152							-0.0038284741938241496
PYPTQKNTF	9	Unmodified	_PYPTQKNTF_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.277106	1094.53966	0.31294	0.00017158	-3.1149	-0.0017078	-2.8019	-0.0015362	548.2750234652615	58.493	0.53957	58.251	58.044	58.583	-0.24165	-0.039731	0.00037013	NaN	27.882	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203710			61308	12985	43090	43152							-0.0038284741938241496
PYSAPQAPAL	10	Unmodified	_PYSAPQAPAL_					0	0	0		ENST00000537091.2_1_17:17772601-17875627:-|nuORF;nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2	ENST00000537091.2_1_17:17772601-17875627:-|nuORF	ENST00000537091.2_1_17:17772601-17875627:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	507.7646179199219	2	507.766374	1013.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.195	1	39.195	38.695	39.695	0								0	0	0	0.25213	1	3347	3347		79.451	2.6044	1				61309	8581	43091	43153	66519	66519					0.011977675518778597
PYSDWTSCPS	10	Unmodified	_PYSDWTSCPS_					0	0	0		ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.7277221679688	2	571.726589	1141.43863	-0.62409	-0.00035681	2.9804	0.0017039	2.3563	0.0013471	571.7281413752083	51.574	1.2815	51.427	51.084	52.366	-0.14735					96	35	4	0	0	0	1.0508	1	5452	5452		39.253	1.4413	1	5780500			61310	759	43092	43154	66520	66520					-0.12643667184420337
PYSKWLIRDCW	11	Unmodified	_PYSKWLIRDCW_					0	0	0			REV__ENSG00000165458|ENST00000298229|INPPL1	REV__ENSG00000165458|ENST00000298229|INPPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7738342285156	3	489.579823	1465.71764	-0.22918	-0.0001122	4.1428	0.0020283	3.9137	0.001916	489.58173294124595	65.64	0.24991	65.389	65.27	65.52	-0.25112					8	5	2	0	0	0	0.024759	1	7509	7509		36.318	19.151	1	80957	+		61311	25887	43093	43155	66521	66521					0.0034107950814359356
PYSLERKLS	9	Unmodified	_PYSLERKLS_					0	0	0		nc|ENSG00000224940|C9JH25-2|PRRT4;nc|ENSG00000224940|C9JH25-3|PRRT4;ENSG00000224940|ENST00000446477|PRRT4	nc|ENSG00000224940|C9JH25-2|PRRT4	nc|ENSG00000224940|C9JH25-2|PRRT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7297973632812	2	546.806031	1091.59751	-0.97551	-0.00053341	0.69364	0.00037929	-0.28186	-0.00015412	546.806277152353	61.81	0.59266	61.632	61.37	61.963	-0.17781					38	14	4	0	0	0	0.024457	1	6894	6894		29.15	3.6994	1	672360			61312	10650	43094	43156	66522	66522					0.05537414506034111
PYSLLIFI	8	Unmodified	_PYSLLIFI_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2	ENSG00000018625|ENST00000361216|ATP1A2	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2698974609375	2	483.288954	964.563355	-0.87548	-0.00042311	-1.8855	-0.00091123	-2.761	-0.0013343	483.28842942723463	83.021	0.38374	83.047	82.874	83.257	0.02655					17	8	3	0	0	0	0.027866	1	10276	10276		86.935	7.4836	1	59574			61313	943	43095	43157	66523	66523					0.07965618085074766
PYSRNKAL	8	Unmodified	_PYSRNKAL_					0	0	0		ENSG00000119514|ENST00000375011|GALNT12;nc|ENSG00000119514|Q8IXK2-2|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.3004150390625	2	474.766709	947.518865	-0.50864	-0.00024149	-3.1099	-0.0014765	-3.6185	-0.001718	474.7646216733231	39.712	0.27322	39.736	39.635	39.908	0.023727					12	7	2	0	0	0	0.027866	1	3374	3374		45.952	8.1404	1	177330			61314	3742	43096	43158	66524	66524					0.04300606991614586
PYSSSLAPPQ	10	Unmodified	_PYSSSLAPPQ_					0	0	0			REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.7611083984375	2	523.761289	1045.50803	0.53787	0.00028171	-1.2292	-0.00064378	-0.69129	-0.00036207	523.7606485844576	59.749	1.3952	59.573	59.24	60.635	-0.1761					103	35	3	0	0	0	1.0393	1	6697	6697		40.778	1.7567	1	38837000	+		61315	33868	43097	43159	66525	66525					-0.01290840173351171
PYSVEMLNIH	10	Unmodified	_PYSVEMLNIH_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1;REV__ENSG00000124126|ENST00000371941|PREX1	REV__ENSG00000124126|ENST00000371941|PREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5594177246094	3	401.533991	1201.58014	0.019317	7.7566E-06	1.8074	0.00072572	1.8267	0.00073347	401.5345966739579	35.945	0.9738	35.74	35.428	36.402	-0.20518					60	26	3	0	0	0	0.03519	1	2740	2740		33.922	4.7516	1	1971900	+		61316	36628;22733	43098	43160	66526	66526					-0.0125824909127914
PYTLDRNSLY	10	Unmodified	_PYTLDRNSLY_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3136596679688	2	621.311677	1240.6088	-0.33526	-0.0002083	3.3014	0.0020512	2.9661	0.0018429	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.74632	1	7629	7629		64.207	2.0999	1	26099000			61317	9025	43099	43161	66527	66527					-0.0018780819048060948
PYTMVPLGGL	10	Unmodified	_PYTMVPLGGL_					0	0	0		nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC	nc|ENSG00000144857|Q9BWV1|BOC	nc|ENSG00000144857|Q9BWV1|BOC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2579956054688	2	524.280803	1046.54705	-0.15303	-8.023E-05	-2.2903	-0.0012007	-2.4433	-0.001281	524.2811686176188	63.466	0.11227	63.466	63.41	63.522	0					4	2	2	0	0	0	0.03519	1	7419	7419		23.042	0	1	53688			61318	5777	43100	43162	66528	66528					0.025641688567020537
PYTQQIFKV	9	Unmodified	_PYTQQIFKV_					0	0	0			REV__ENST00000477798.5_1_3:33840175-33866683:+|nuORF	REV__ENST00000477798.5_1_3:33840175-33866683:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3107299804688	2	562.310949	1122.60735	0.14969	8.4173E-05	-0.21723	-0.00012215	-0.067535	-3.7976E-05	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.16468	1	10985	10985		96.19	0	1	3232300	+		61319	26448	43101	43163	66529	66529					0.05094602511417179
PYVAQQIIN	9	Unmodified	_PYVAQQIIN_					0	0	0			REV__ENST00000264645.11_1_17:38327543-38327843:+|nuORF	REV__ENST00000264645.11_1_17:38327543-38327843:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2637329101562	2	523.287474	1044.5604	-0.60182	-0.00031493	-1.3826	-0.00072351	-1.9844	-0.0010384	523.2864209342442	54.578	0.47361	54.432	54.173	54.647	-0.14609					24	12	3	0	0	0	0.024381	1	5768	5768		45.952	0	1	275130	+		61320	29724	43102	43164	66530	66530					0.039897429602888224
PYVARIETL	9	Unmodified	_PYVARIETL_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.3021240234375	2	531.303124	1060.5917	0.057679	3.0645E-05	0.0011268	5.9867E-07	0.058806	3.1244E-05	531.3028728012209	73.704	0.86314	73.704	73.477	74.34	0					35	20	2	0	0	0	0.11092	2	9026	9013;9026		108.09	18.479	1	2161100	+		61321	24935	43103	43165	66531;66532	66532					0.06382315994369492
PYVARIETL	9	Unmodified	_PYVARIETL_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3034057617188	2	531.303124	1060.5917	-0.6167	-0.00032766	0.28191	0.00014978	-0.33479	-0.00017787	531.3030501232815	73.693	1.4545	73.703	73.479	74.933	0.0096512					48	34	2	0	0	0	0.18915	2	8930	8930;8943		90.777	19.481	1	2355200	+		61322	24935	43103	43165	66533;66534	66533					0.06382315994369492
PYVARIETL	9	Unmodified	_PYVARIETL_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	531.303124	1060.5917	0.057679	3.0645E-05	0.0011268	5.9867E-07	0.058806	3.1244E-05	531.3028728012209	73.704	0.86314	73.704	73.477	74.34	0	-0.022649	-0.00016568	NaN	108.09	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2161100	+		61323	24935	43103	43165							0.06382315994369492
PYVLLGDYSV	10	Unmodified	_PYVLLGDYSV_					0	0	0		ENST00000491560.1_1_7:99055952-99057898:-|nuORF;ENST00000481899.1_1_7:99056719-99057898:-|nuORF	ENST00000491560.1_1_7:99055952-99057898:-|nuORF	ENST00000491560.1_1_7:99055952-99057898:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.3221435546875	2	563.294965	1124.57538	-0.10698	-6.0259E-05	-1.2983	-0.00073134	-1.4053	-0.0007916	563.7974744023611	69.882	0.24995	69.659	69.514	69.764	-0.22245					7	5	2	0	0	0	0.03519	1	8096	8096		24.203	12.692	1	87600			61324	15239	43104	43166	66535	66535					0.018071900376071426
PYVRHKIL	8	Unmodified	_PYVRHKIL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7164916992188	2	513.316369	1024.61818	-0.085637	-4.3959E-05	1.1579	0.00059438	1.0723	0.00055042	513.3168908422256	55.19	1.1046	54.984	54.685	55.79	-0.20613					57	30	3	0	0	0	0.027866	1	6013	6013		13.775	0	1	347890			61325	1272	43105	43167	66536	66536					0.10686049676360199
PYVVAPPFVL	10	Unmodified	_PYVVAPPFVL_					0	0	0		ENST00000541285.1_1_17:18111727-18111829:+|nuORF	ENST00000541285.1_1_17:18111727-18111829:+|nuORF	ENST00000541285.1_1_17:18111727-18111829:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.3343505859375	2	551.320786	1100.62702	0.42642	0.00023509	-3.7794	-0.0020836	-3.353	-0.0018486	551.3185088560642	74.641	0.71401	74.458	74.137	74.851	-0.18278					35	16	3	0	0	0	0.03519	1	8772	8772		35.201	12.158	1	413410			61326	16436	43106	43168	66537	66537					0.08072978522181984
PYWVTVAKL	9	Unmodified	_PYWVTVAKL_					0	0	0		ENST00000465761.1_1_20:43561720-43565607:+|nuORF	ENST00000465761.1_1_20:43561720-43565607:+|nuORF	ENST00000465761.1_1_20:43561720-43565607:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.7843017578125	2	538.810585	1075.60662	-0.72937	-0.00039299	-1.6152	-0.00087029	-2.3446	-0.0012633	538.8076042067623	57.093	0.71821	57.093	56.778	57.496	0					52	19	4	0	0	0	0.019502	1	6455	6455		111.65	44.155	1	706410			61327	14793	43107	43169	66538	66538					0.07183807862361391
QAAAAAAGLF	10	Unmodified	_QAAAAAAGLF_					0	0	0			REV__ENST00000498115.1_1_1:228334565-228335341:+|nuORF	REV__ENST00000498115.1_1_1:228334565-228335341:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.7386169433594	2	445.74016	889.465767	-0.46214	-0.00020599	-2.339	-0.0010426	-2.8012	-0.0012486	445.73895328786335	65.199	1.0387	65.199	64.836	65.875	0					60	28	3	0	0	0	0.84306	1	7718	7718		57.811	2.3071	1	3120200	+		61328	33870	43108	43170	66539	66539					0.016612292089348557
QAAAQGNVTL	10	Unmodified	_QAAAQGNVTL_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.28863525390625	2	486.759081	971.503609	0.0036814	1.7919E-06	0.7793	0.00037933	0.78299	0.00038113	486.7585007122571	58.735	0.72189	58.826	58.561	59.283	0.091217					34	19	2	0	0	0	0.03519	1	6554	6554		56.721	0	1	217880			61329	1596	43109	43171	66540	66540					0.016716954037633514
QAAAWTTKP	9	Unmodified	_QAAAWTTKP_					0	0	0			REV__ENSG00000182566|ENST00000328853|CLEC4G	REV__ENSG00000182566|ENST00000328853|CLEC4G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7955627441406	2	487.258717	972.50288	0.045674	2.2255E-05	3.1247	0.0015225	3.1704	0.0015448	487.26014078905956	31.008	0.44881	30.855	30.597	31.045	-0.15231					18	10	2	0	0	0	0.024374	1	1997	1997		49.442	8.8689	1	220070	+		61330	27489	43110	43172	66541	66541					0.015529007547115725
QAAAWTTKP	9	Unmodified	_QAAAWTTKP_					0	0	0			REV__ENSG00000182566|ENST00000328853|CLEC4G	REV__ENSG00000182566|ENST00000328853|CLEC4G	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.258717	972.50288	-0.55979	-0.00027276	0.20981	0.00010223	-0.34999	-0.00017053	487.2586786321695	30.468	0.20693	30.476	30.331	30.538	0.0086708	-0.16419	-0.0023037	NaN	32.812	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391240	+		61331	27489	43110	43172							0.015529007547115725
QAAAWTTKP	9	Unmodified	_QAAAWTTKP_					0	0	0			REV__ENSG00000182566|ENST00000328853|CLEC4G	REV__ENSG00000182566|ENST00000328853|CLEC4G	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.258717	972.50288	-1.3184	-0.00064238	0.50968	0.00024835	-0.80869	-0.00039404	487.25906258737365	30.262	0.33288	30.336	30.045	30.378	0.074314	-0.30424	-0.0020115	NaN	32.812	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	896890	+		61332	27489	43110	43172							0.015529007547115725
QAALGRASTG	10	Unmodified	_QAALGRASTG_					0	0	0		OTOS|p.L76Pfs*56|1|0.22|ENSG00000178602|chr2:240139213-240139214|-/G|frameshift_variant	OTOS|p.L76Pfs*56|1|0.22|ENSG00000178602|chr2:240139213-240139214|-/G|frameshift_variant	OTOS|p.L76Pfs*56|1|0.22|ENSG00000178602|chr2:240139213-240139214|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2368469238281	2	466.251423	930.488293	-0.32278	-0.0001505	-0.30429	-0.00014187	-0.62707	-0.00029237	466.2498451848138	28.09	0.44514	28.085	27.929	28.374	-0.0042019					12	10	2	0	0	0	0.03519	1	1588	1588		31.53	23.84	1	50350			61333	18933	43111	43173	66542	66542					0.02026828606574327
QAALPLLSN	9	Unmodified	_QAALPLLSN_					0	0	0		ENSG00000168928|ENST00000303037|CTRB2;ENSG00000168925|ENST00000361017|CTRB1	ENSG00000168928|ENST00000303037|CTRB2	ENSG00000168928|ENST00000303037|CTRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7975769042969	2	463.768917	925.523281	0.30752	0.00014262	0.90851	0.00042134	1.216	0.00056395	463.7687757436081	58.629	0.48116	58.442	58.24	58.721	-0.18705					22	12	2	0	0	0	0.024495	1	6649	6649		26.693	0	1	255300			61334	7884	43112	43174	66543	66543					0.05754071414514783
QAAMVAQPLT	10	Unmodified	_QAAMVAQPLT_					0	0	0			REV__nc|ENSG00000179950|Q9UHX1-3|PUF60	REV__nc|ENSG00000179950|Q9UHX1-3|PUF60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7967529296875	2	515.273509	1028.53247	-1.0941	-0.00056375	-3.5357	-0.0018218	-4.6297	-0.0023856	515.2720767897846	35.649	0.39453	35.649	35.492	35.886	0					24	9	3	0	0	0	0.03519	1	2751	2751		32.812	17.948	1	338950	+		61335	27305	43113	43175	66544	66544					0.019340967085327065
QAAQGHAFLGR	11	Unmodified	_QAAQGHAFLGR_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.826416015625	2	578.304521	1154.59449	0.51181	0.00029598	-3.4903	-0.0020184	-2.9785	-0.0017225	578.3016740838198	18.921	0.74006	18.921	18.626	19.366	0					20	14	2	0	0	0	0.024736	1	339	339		29.17	6.1276	1	25472			61336	5175	43114	43176	66545	66545					0.023375841719143864
QAAQKQEEE	9	Unmodified	_QAAQKQEEE_					0	0	0			REV__nc|ENSG00000138101|O60941-2|DTNB	REV__nc|ENSG00000138101|O60941-2|DTNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2928466796875	2	530.74891	1059.48327	-1.0629	-0.00056412	2.9891	0.0015865	1.9262	0.0010223	530.7499771935059	24.103	0.82284	24.103	23.651	24.474	0					25	18	2	0	0	0	0.024484	1	993	993		30.318	2.2362	1	41421	+		61337	23820	43115	43177	66546	66546					-0.044095200466927054
QAAQLLQV	8	Unmodified	_QAAQLLQV_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.75579833984375	2	435.75581	869.497067	1.1103	0.0004838	-1.4304	-0.00062329	-0.3201	-0.00013948	435.75513751948904	63.544	1.1878	63.544	63.196	64.384	0					87	32	5	0	0	0	0.10945	1	7472	7472		157.99	0.78074	1	12739000			61338	10013	43116	43178	66547	66547					0.0570980224304094
QAAQLLQV	8	Unmodified	_QAAQLLQV_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.7558288574219	2	435.75581	869.497067	0.26326	0.00011472	-0.35324	-0.00015393	-0.08998	-3.9209E-05	435.7556352659727	63.82	0.72013	63.568	63.192	63.912	-0.25141					66	19	4	0	0	0	0.10945	2	7473	7473;7485		157.99	12.848	1	14190000			61339	10013	43116	43178	66548;66549	66548					0.0570980224304094
QAAQLLQV	8	Unmodified	_QAAQLLQV_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.7560119628906	2	435.75581	869.497067	1.9361	0.00084367	-2.1868	-0.0009529	-0.25068	-0.00010923	435.7547438503769	63.509	1.1481	63.563	63.233	64.381	0.054104					76	31	5	0	0	0	0.10945	2	7355	7355;7381		157.99	5.5187	1	13291000			61340	10013	43116	43178	66550;66551	66550					0.0570980224304094
QAAQLLQV	8	Unmodified	_QAAQLLQV_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.75581	869.497067	-0.084725	-3.6919E-05	4.4649	0.0019456	4.3801	0.0019087	435.75782240425815	63.7	0.61574	63.472	63.251	63.866	-0.22773	-0.064503	0.0042063	NaN	157.99	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89391			61341	10013	43116	43178							0.0570980224304094
QAARLLLPG	9	Unmodified	_QAARLLLPG_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2;nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.76416015625	2	469.792727	937.5709	-0.081638	-3.8353E-05	0.27001	0.00012685	0.18838	8.8497E-05	469.79276019432933	31.981	0.70797	31.981	31.71	32.418	0					25	17	2	0	0	0	0.024506	1	2156	2156		23.042	3.6825	1	308200			61342	7494	43117	43179	66552	66552					0.09961770405379866
QAARLLPL	8	Unmodified	_QAARLLPL_					0	0	0			REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF	REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2655944824219	2	441.281995	880.549437	-0.64459	-0.00028445	0.2471	0.00010904	-0.39749	-0.00017541	441.2820797539577	39.449	0.35778	39.473	39.277	39.635	0.023727					15	9	2	0	0	0	0.027866	1	3349	3349		26.796	1.3459	1	124130	+		61343	31304	43118	43180	66553	66553					0.10438385376664883
QAARTINDP	9	Unmodified	_QAARTINDP_					0	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2794494628906	2	493.256705	984.498858	-0.14617	-7.2099E-05	-4.0905	-0.0020177	-4.2366	-0.0020897	493.2546885753114	41.149	0.31957	41.172	40.97	41.29	0.023006					12	8	2	0	0	0	0.024477	1	3620	3620		35.618	8.9254	1	81806	+		61344	36659	43119	43181	66554	66554					0.005988112609884411
QAASPIEV	8	Unmodified	_QAASPIEV_					0	0	0		ENST00000585652.5_1_19:2109366-2109738:-|nuORF	ENST00000585652.5_1_19:2109366-2109738:-|nuORF	ENST00000585652.5_1_19:2109366-2109738:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.26873779296875	2	407.718893	813.423233	0.12005	4.8948E-05	2.318	0.00094508	2.438	0.00099403	407.72019804655525	28.51	0.50386	28.51	28.232	28.736	0					16	11	2	0	0	0	0.027866	1	1693	1693		60.972	3.1607	1	66249			61345	17231	43120	43182	66555	66555					0.009058340807087006
QAATKKHKA	9	Unmodified	_QAATKKHKA_					0	0	0			REV__ENSG00000198074|ENST00000359579|AKR1B10	REV__ENSG00000198074|ENST00000359579|AKR1B10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2794494628906	2	491.793258	981.571963	-0.19759	-9.7172E-05	-0.33345	-0.00016399	-0.53104	-0.00026116	491.7930246128813	41.203	0.49376	41.226	40.97	41.464	0.023006					23	13	2	0	0	0	0.024427	1	3620	3620		19.997	0	1	232240	+		61346	28381	43121	43183	66556	66556					0.08043984774269575
QAAVQEAAVQ	10	Unmodified	_QAAVQEAAVQ_					0	0	0			REV__ENSG00000185662|ENST00000523047|SMIM23	REV__ENSG00000185662|ENST00000523047|SMIM23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.30389404296875	2	507.764363	1013.51417	0.0030585	1.553E-06	-0.86878	-0.00044113	-0.86572	-0.00043958	507.76392314913346	41.858	1.1998	41.858	41.225	42.424	0					48	34	2	0	0	0	0.03519	1	3713	3713		28.081	0	1	213320	+		61347	27781	43122	43184	66557	66557					0.007956780581821477
QAAVSPMQL	9	Unmodified	_QAAVSPMQL_					0	0	0			REV__nc|ENSG00000176024|Q6PF04-2|ZNF613	REV__nc|ENSG00000176024|Q6PF04-2|ZNF613	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7450256347656	2	472.747127	943.479702	0.57632	0.00027245	-4.3971	-0.0020787	-3.8208	-0.0018063	472.7449252357996	48.938	0.74252	48.938	48.619	49.362	0					48	20	3	0	0	0	0.42604	1	5020	5020		64.207	2.0999	1	3557100	+		61348	26990	43123	43185	66558	66558					0.00570138645730367
QACLLWLEY	9	Unmodified	_QACLLWLEY_					0	0	0			REV__ENST00000272645.8_1_2:128604554-128604734:-|nuORF	REV__ENST00000272645.8_1_2:128604554-128604734:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3110961914062	2	569.78371	1137.55287	-0.27184	-0.00015489	-3.5442	-0.0020195	-3.8161	-0.0021743	569.7816639014493	31.296	1.1028	31.143	30.597	31.699	-0.15231					47	27	2	0	0	0	0.024405	1	2105	2105		35.618	0	1	216840	+		61349	29814	43124	43186	66559	66559					-0.010407326316681065
QADECLYDAL	10	Unmodified	_QADECLYDAL_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2963256835938	2	570.747521	1139.48049	-0.35004	-0.00019978	4.0446	0.0023084	3.6945	0.0021086	570.7495776509905	61.564	0.45521	61.307	61.008	61.464	-0.25725					18	10	2	0	0	0	0.03519	1	6857	6857		30.318	3.6248	1	109020	+		61350	28535	43125	43187	66560	66560					-0.08367111495886093
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.26123046875	2	540.261456	1078.50836	-0.47419	-0.00025619	0.63883	0.00034514	0.16464	8.8949E-05	540.2616818357362	61.894	0.79347	61.681	61.375	62.168	-0.21375					72	19	5	0	0	0	0.13494	1	6926	6926		102.77	36.97	1	4715900			61351	2661	43126	43188	66561	66561					-0.027754204534630844
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.2616577148438	2	540.261456	1078.50836	-1.1365	-0.00061402	1.2098	0.00065362	0.073288	3.9595E-05	540.2619719728336	61.787	0.94176	61.609	61.287	62.229	-0.17782					67	23	4	0	0	0	0.13494	2	6929	6929;6941		102.77	32.547	1	4373700			61352	2661	43126	43188	66562;66563	66562					-0.027754204534630844
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.2610473632812	2	540.261456	1078.50836	-0.97718	-0.00052793	1.0259	0.00055425	0.04871	2.6316E-05	540.2619343631019	61.944	0.86811	61.687	61.383	62.251	-0.25725					66	21	4	0	0	0	0.08613	1	6925	6925		115.46	27.763	1	5078300			61353	2661	43126	43188	66564	66564					-0.027754204534630844
QADFSVLHY	9	Unmodified	_QADFSVLHY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.261456	1078.50836	-1.3588	-0.00073411	-2.8183	-0.0015226	-4.1771	-0.0022567	540.7613316178414	61.827	0.17687	61.889	61.806	61.983	0.062767	0.17291	-0.0041063	NaN	115.46	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54944			61354	2661	43126	43188							-0.027754204534630844
QADGREAAQL	10	Unmodified	_QADGREAAQL_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7630004882812	2	529.764894	1057.51524	0.58332	0.00030902	-3.9955	-0.0021166	-3.4121	-0.0018076	529.7625427065618	83.153	0.85716	83.062	82.485	83.342	-0.090454					40	19	3	0	0	0	0.52765	1	10361	10361		85.161	0.2453	1	665970	+		61355	22025	43127	43189	66565	66565					-0.011221075729281438
QADGREAAQL	10	Unmodified	_QADGREAAQL_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7633666992188	2	529.764894	1057.51524	-0.7093	-0.00037576	-2.8436	-0.0015065	-3.5529	-0.0018822	529.7632087230267	83.034	0.76826	83.06	82.531	83.3	0.026558					38	17	3	0	0	0	0.72729	1	10309	10309		65.465	3.7741	1	741930	+		61356	22025	43127	43189	66566	66566					-0.011221075729281438
QADLINELY	9	Unmodified	_QADLINELY_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.77392578125	2	539.774396	1077.53424	0.047393	2.5582E-05	0.27141	0.0001465	0.3188	0.00017208	539.7743390431418	77.313	0.84093	77.051	76.644	77.485	-0.26202					43	20	3	0	0	0	0.45795	1	9181	9181		62.107	3.3255	1	1647900			61357	8016	43128	43190	66567	66567					-0.0014257100183385774
QADRTAVWL	9	Unmodified	_QADRTAVWL_					0	0	0		ENST00000300935.7_1_19:16244069-16244282:+|nuORF	ENST00000300935.7_1_19:16244069-16244282:+|nuORF	ENST00000300935.7_1_19:16244069-16244282:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2799682617188	2	530.282723	1058.55089	-1.0052	-0.00053302	0.5264	0.00027914	-0.47877	-0.00025388	530.2831082811714	56.126	1.1877	55.91	55.168	56.356	-0.21551					74	31	5	0	0	0	0.50848	1	6037	6037		58.782	0.55203	1	3022600			61358	11913	43129	43191	66568	66568					0.023959746747550525
QAEAALGPG	9	Unmodified	_QAEAALGPG_					0	0	0		ENST00000309422.6_2_11:64005852-64006020:+|nuORF	ENST00000309422.6_2_11:64005852-64006020:+|nuORF	ENST00000309422.6_2_11:64005852-64006020:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.75579833984375	2	407.208692	812.402832	-0.1722	-7.012E-05	3.5267	0.0014361	3.3545	0.001366	407.2107009761146	38.849	0.17915	38.623	38.523	38.702	-0.2257					8	4	3	0	0	0	0.024466	1	3228	3228		7.1934	0	1	77333			61359	12044	43130	43192	66569	66569					-0.01087336579098519
QAEDFCTITP	10	Unmodified	_QAEDFCTITP_					0	0	0			REV__ENST00000491263.1_1_1:163043981-163044347:+|nuORF	REV__ENST00000491263.1_1_1:163043981-163044347:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.78271484375	2	562.750064	1123.48558	0.22849	0.00012858	-3.3731	-0.0018982	-3.1446	-0.0017696	562.7480905299298	47.363	0.43795	47.094	46.874	47.311	-0.26939					23	11	3	0	0	0	0.03519	1	4605	4605		28.081	10.613	1	223750	+		61360	22331	43131	43193	66570	66570					-0.07122807633254524
QAELKGLHR	9	Unmodified	_QAELKGLHR_					0	0	0		ENSG00000167858|ENST00000338694|TEKT1	ENSG00000167858|ENST00000338694|TEKT1	ENSG00000167858|ENST00000338694|TEKT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7821655273438	2	526.30399	1050.59343	-0.91995	-0.00048417	-0.72424	-0.00038117	-1.6442	-0.00086534	526.8055135987198	19.954	0.19742	19.954	19.831	20.028	0					5	3	2	0	0	0	0.024511	1	473	473		32.812	0	1	9002.4			61361	7744	43132	43194	66571	66571					0.07015369802979876
QAELRAEL	8	Unmodified	_QAELRAEL_					0	0	0		nc|ENSG00000173338|Q9Y2U2-2|KCNK7;nc|ENSG00000173338|Q9Y2U2-3|KCNK7;ENSG00000173338|ENST00000340313|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2563171386719	2	465.256174	928.497795	-0.053401	-2.4845E-05	0.22229	0.00010342	0.16889	7.8575E-05	465.25617500411533	40.783	0.91049	40.783	40.347	41.258	0					55	25	3	0	0	0	0.5947	1	3623	3623		76.774	5.3962	1	2671800			61362	8368	43133	43195	66572	66572					0.030685968920693085
QAESFSQQP	9	Unmodified	_QAESFSQQP_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2593688964844	2	511.232896	1020.45124	-1.2942	-0.00066163	-2.2162	-0.001133	-3.5104	-0.0017946	511.23170286723143	24.655	0.58252	24.608	24.308	24.891	-0.047146					19	12	3	0	0	0	0.024209	1	1075	1075		47.657	0	1	68275	+		61363	26756	43134	43196	66573	66573					-0.058168877298498955
QAESFSQQP	9	Unmodified	_QAESFSQQP_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.232896	1020.45124	-0.23995	-0.00012267	-8.8914	-0.0045456	-9.1314	-0.0046683	511.2305232932678	24.664	0.2134	24.449	24.336	24.55	-0.2151	-0.079543	-0.005191	NaN	47.657	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10936	+		61364	26756	43134	43196							-0.058168877298498955
QAETPLQSSP	10	Unmodified	_QAETPLQSSP_					0	0	0			REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7935791015625	2	529.261653	1056.50875	-1.4006	-0.0007413	-3.9027	-0.0020655	-5.3033	-0.0028068	529.258141550754	37.509	0.5455	37.29	36.923	37.468	-0.2195					22	13	3	0	0	0	0.03519	1	2977	2977		49.536	0	1	303640	+		61365	36895	43135	43197	66574	66574					-0.01724045524269968
QAEVLRVL	8	Unmodified	_QAEVLRVL_					0	0	0		ENSG00000160808|ENST00000292327|MYL3	ENSG00000160808|ENST00000292327|MYL3	ENSG00000160808|ENST00000292327|MYL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2562561035156	2	464.284734	926.554916	0.97345	0.00045196	-0.57271	-0.0002659	0.40074	0.00018606	464.28420772097337	59.523	0.41802	59.523	59.257	59.675	0					11	10	2	0	0	0	0.027866	1	6769	6769		44.117	0	1	65166			61366	6843	43136	43198	66575	66575					0.0887006416847953
QAEVLRVL	8	Unmodified	_QAEVLRVL_					0	0	0		ENSG00000160808|ENST00000292327|MYL3	ENSG00000160808|ENST00000292327|MYL3	ENSG00000160808|ENST00000292327|MYL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.25665283203125	2	464.284734	926.554916	0.17881	8.3021E-05	-0.24085	-0.00011182	-0.062035	-2.8802E-05	464.2846528112841	58.323	1.5761	58.323	57.719	59.295	0					120	42	5	0	0	0	0.027866	1	6745	6745		30.504	1.3541	1	15041000			61367	6843	43136	43198	66576	66576					0.0887006416847953
QAEVPSLLL	9	Unmodified	_QAEVPSLLL_					0	0	0			REV__ENSG00000095932|ENST00000215531|SMIM24	REV__ENSG00000095932|ENST00000215531|SMIM24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2616882324219	2	485.2844	968.554247	-1.1383	-0.00055239	4.054	0.0019673	2.9157	0.0014149	485.28635409760363	38.256	0.44045	38.256	38.199	38.639	0					19	11	2	0	0	0	0.024323	1	3209	3209		35.618	7.736	1	410480	+		61368	20978	43137	43199	66577	66577					0.06871224728774905
QAEWLDLI	8	Unmodified	_QAEWLDLI_					0	0	0			REV__ENSG00000182168|ENST00000453304|UNC5C	REV__ENSG00000182168|ENST00000453304|UNC5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.8031921386719	2	494.260925	986.507297	1.7704	0.00087502	2.9974	0.0014815	4.7677	0.0023565	494.2612877510305	23.478	0.5809	23.287	23.079	23.66	-0.19117					23	13	3	0	0	0	0.027866	1	879	879		65.803	12.452	1	324460	+		61369	27453	43138	43200	66578	66578					0.01350365177609092
QAFIGEEVL	9	Unmodified	_QAFIGEEVL_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MSMS	OPSCC_40_ClassI_Rep-2	5	503.26629638671875	2	503.266207	1004.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.087	1	70.83	70.33	71.33	-0.25713								0	0	0	0.3606	1	8299	8299		64.207	4.089	1				61370	10516	43139	43201	66579	66579					0.01578347832048621
QAFKSFVSKT	10	Unmodified	_QAFKSFVSKT_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	572.2623291015625	2	571.813856	1141.61316	-0.53737	-0.00030728	-2.7613	-0.001579	-3.2987	-0.0018862	571.8119495025464	43.41	0.54783	43.271	43.027	43.575	-0.13929					34	14	4	0	0	0	0.03519	1	4006	4006		30.318	3.6248	1	453330	+		61371	27638	43140	43202	66580	66580					0.04801701023075111
QAFPNTNRW	9	Unmodified	_QAFPNTNRW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000421044.1_1_3:40637993-40638476:-|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.27734375	2	567.277972	1132.54139	-0.12101	-6.8644E-05	-0.22872	-0.00012975	-0.34972	-0.00019839	567.2778350270328	49.446	0.98281	49.345	48.955	49.938	-0.1008					73	25	4	0	0	0	0.10174	4	4970	4946;4958;4970;4982		110.12	40.492	1	2041200			61372	10885	43141	43203	66581;66582;66583;66584	66583					-0.01957793610790759
QAFPNTNRW	9	Unmodified	_QAFPNTNRW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000421044.1_1_3:40637993-40638476:-|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.277587890625	2	567.277972	1132.54139	0.093468	5.3022E-05	-0.18811	-0.00010671	-0.09464	-5.3687E-05	567.2777765726033	49.716	0.9831	49.436	49.086	50.07	-0.27977					66	25	4	0	0	0	0.091713	1	5003	5003		113.41	33.699	1	2466000			61373	10885	43141	43203	66585	66585					-0.01957793610790759
QAFPNTNRW	9	Unmodified	_QAFPNTNRW_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000421044.1_1_3:40637993-40638476:-|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.27685546875	2	567.277972	1132.54139	0.18192	0.0001032	-0.33741	-0.0001914	-0.15548	-8.8202E-05	567.277673335826	49.531	1.133	49.351	48.961	50.094	-0.18071					71	29	4	0	0	0	0.10174	4	4993	4955;4966;4979;4993		110.12	38.242	1	2512400			61374	10885	43141	43203	66586;66587;66588;66589	66589					-0.01957793610790759
QAFSKGCVGCA	11	Unmodified	_QAFSKGCVGCA_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7730102539062	2	535.741519	1069.46849	-0.28754	-0.00015404	-3.1861	-0.0017069	-3.4737	-0.001861	535.7395163831084	41.584	0.10973	41.584	41.505	41.615	0					4	2	2	0	0	0	0.024502	1	3752	3752		87.696	10.85	1	55185	+		61375	28309	43142	43204	66590	66590					-0.06347006720056925
QAGAAVRAGP	10	Unmodified	_QAGAAVRAGP_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.23297119140625	2	449.248683	896.482814	0.19548	8.7819E-05	1.487	0.00066802	1.6824	0.00075584	449.24841999427485	25.971	0.45115	26.051	25.879	26.33	0.080088					23	10	3	0	0	0	0.03519	1	1213	1213		37.812	0	1	112450	+		61376	28740	43143	43205	66591	66591					0.030431498147549974
QAGAHRHGAP	10	Unmodified	_QAGAHRHGAP_					0	0	0			REV__ENST00000270824.1_1_1:36787668-36787989:-|nuORF	REV__ENST00000270824.1_1_1:36787668-36787989:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7842102050781	2	501.254831	1000.49511	-0.7425	-0.00037218	3.0331	0.0015203	2.2906	0.0011482	501.2557133133879	72.266	0.46202	72.067	71.909	72.371	-0.19811					15	10	2	0	0	0	0.03519	1	8451	8451		44.117	0	1	85961	+		61377	29799	43144	43206	66592	66592					-0.005118137221984398
QAGDCFDL	8	Unmodified	_QAGDCFDL_					0	0	0			REV__ENST00000266070.8_1_20:61525077-61525275:-|nuORF	REV__ENST00000266070.8_1_20:61525077-61525275:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7480773925781	2	434.678911	867.343268	-0.30482	-0.0001325	-1.0475	-0.00045534	-1.3523	-0.00058784	434.6784740865183	65.178	0.37199	65.178	65.02	65.392	0					18	10	2	0	0	0	0.027866	1	7685	7685		68.485	18.46	1	316820	+		61378	29758	43145	43207	66593	66593					-0.09570975584790631
QAGKQSHI	8	Unmodified	_QAGKQSHI_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7482604980469	2	434.735409	867.456264	-0.055567	-2.4157E-05	-0.35961	-0.00015634	-0.41518	-0.00018049	434.735767550489	65.719	0.46613	65.446	65.33	65.796	-0.27282					19	12	3	0	0	0	0.027866	1	7757	7757		85.359	11.104	1	419970			61379	3568	43146	43208	66594	66594					0.017234609234378695
QAGLGAAWEP	10	Unmodified	_QAGLGAAWEP_					0	0	0		HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|17|2|anti-sense;HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|23|3|anti-sense	HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|17|2|anti-sense	HERVH-int_dup117|chr1:68391184-68391562:+|4.985899315354555|0.0532249983951076|6.55|491.0|17|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2783508300781	2	500.248349	998.482145	-0.34242	-0.00017129	-3.9108	-0.0019564	-4.2532	-0.0021277	500.2472040327609	60.983	0.40858	61.054	60.831	61.239	0.071125					16	10	3	0	0	0	0.03519	1	6928	6928		58.782	23.164	1	149290			61380	17719	43147	43209	66595	66595					-0.017156896249616693
QAGLQLGQT	9	Unmodified	_QAGLQLGQT_					0	0	0		tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7682800292969	2	458.248349	914.482145	-0.61577	-0.00028218	2.2209	0.0010177	1.6052	0.00073556	458.248495077163	36.329	0.81631	36.287	36.032	36.849	-0.042454					30	21	2	0	0	0	0.02435	1	2939	2939		34.173	6.2903	1	229910			61381	38103	43148	43210	66596	66596					0.021483103750597365
QAGLRPRA	8	Unmodified	_QAGLRPRA_					0	0	0			REV__ENST00000599256.5_1_19:18682694-18682976:+|nuORF	REV__ENST00000599256.5_1_19:18682694-18682976:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7479553222656	2	434.759218	867.503883	0.40748	0.00017716	-1.6129	-0.00070123	-1.2054	-0.00052407	434.7584658715894	65.5	0.14016	65.5	65.426	65.566	0					5	3	2	0	0	0	0.027866	1	7758	7758		65.803	0	1	74305	+		61382	35828	43149	43211	66597	66597					0.06483159914273529
QAGNPKGLFG	10	Unmodified	_QAGNPKGLFG_					0	0	0			REV__ENST00000448866.5_2_7:139529035-139611059:+|nuORF	REV__ENST00000448866.5_2_7:139529035-139611059:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.799560546875	2	494.764166	987.513779	-0.47449	-0.00023476	-1.6803	-0.00083133	-2.1548	-0.0010661	494.7634050913932	93.785	0.66007	93.791	93.391	94.051	0.0059891					26	15	3	0	0	0	0.03519	1	11797	11797		35.618	3.6634	1	132540	+		61383	32662	43150	43212	66598	66598					0.019523031290077597
QAGRVALKI	9	Unmodified	_QAGRVALKI_					0	0	0			REV__ENSG00000159248|ENST00000290374|GJD2	REV__ENSG00000159248|ENST00000290374|GJD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.30596923828125	2	478.306001	954.597449	1.0915	0.00052206	-1.2815	-0.00061293	-0.18999	-9.0875E-05	478.3054041702636	18.625	0.73953	18.469	17.953	18.693	-0.15637					31	14	4	0	0	0	0.92825	1	325	325		30.504	0.6621	1	256740	+		61384	25242	43151	43213	66599	66599					0.11833459296701676
QAGTGAHNL	9	Unmodified	_QAGTGAHNL_					0	0	0		ENST00000532161.5_2_11:102322944-102323061:-|nuORF	ENST00000532161.5_2_11:102322944-102323061:-|nuORF	ENST00000532161.5_2_11:102322944-102323061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7482604980469	2	434.717216	867.419879	-0.29498	-0.00012823	-3.1521	-0.0013703	-3.4471	-0.0014985	434.71603880607296	65.619	0.33714	65.347	65.195	65.532	-0.27282					12	9	2	0	0	0	0.022587	1	7757	7757		74.255	24.231	1	356980			61385	16281	43152	43214	66600	66600					-0.01913415973285737
QAGTGAHNL	9	Unmodified	_QAGTGAHNL_					0	0	0		ENST00000532161.5_2_11:102322944-102323061:-|nuORF	ENST00000532161.5_2_11:102322944-102323061:-|nuORF	ENST00000532161.5_2_11:102322944-102323061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7477722167969	2	434.717216	867.419879	0.050171	2.181E-05	3.2603	0.0014173	3.3105	0.0014391	434.71885666403125	65.19	0.32569	65.228	64.928	65.254	0.037384					13	8	2	0	0	0	0.020546	1	7601	7601		74.255	16.444	1	199730			61386	16281	43152	43214	66601	66601					-0.01913415973285737
QAGTLMVLL	9	Unmodified	_QAGTLMVLL_					0	0	0			REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3001708984375	2	473.275521	944.536489	0.31384	0.00014853	2.3461	0.0011104	2.6599	0.0012589	473.2771443341927	19.926	0.48255	19.763	19.477	19.96	-0.16299					13	9	2	0	0	0	0.024457	1	505	505		37.159	9.2769	1	19713	+		61387	27004	43153	43215	66602	66602					0.06200186202261193
QAGVATKGPN	10	Unmodified	_QAGVATKGPN_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.77191162109375	2	471.753798	941.493044	-0.33927	-0.00016005	0.36131	0.00017045	0.022037	1.0396E-05	471.75387126108103	38.356	0.5517	38.273	38.017	38.569	-0.082516					18	14	2	0	0	0	0.03519	1	3242	3242		39.253	0	1	299890			61388	6977	43154	43216	66603	66603					0.01995712749339873
QAGVQRRD	8	Unmodified	_QAGVQRRD_					0	0	0		SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|3|1|sense;chr12:14354815-14423909|112|15.09|0.0|20.53|+|0|TE_info:SVA_C,SVA_C_dup319,SVA,Retroposon,donor,+,14354081,14354815|None,ATF7IP|3;ENST00000560119.5_1_15:49584731-49620353:+|nuORF;nc|ENSG00000165806|P55210-2|CASP7	SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|3|1|sense	SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|3|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7773132324219	2	465.249215	928.483876	-0.48766	-0.00022688	-1.6208	-0.00075409	-2.1085	-0.00098097	465.24846470710355	49.425	0.48876	49.499	49.242	49.731	0.074196					16	12	2	0	0	0	0.027866	1	5010	5010		31.955	0	1	172810			61389	317	43155	43217	66604	66604					0.016773641836607567
QAGYIKVL	8	Unmodified	_QAGYIKVL_					0	0	0			REV__ENSG00000173068|ENST00000380672|BNC2	REV__ENSG00000173068|ENST00000380672|BNC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7455139160156	2	446.268553	890.522553	-0.39672	-0.00017704	3.315	0.0014794	2.9183	0.0013023	446.2700088391055	24.998	0.98653	24.771	24.325	25.311	-0.22683					43	22	3	0	0	0	0.027866	1	1120	1120		19.36	0	1	112470	+		61390	26735	43156	43218	66605	66605					0.0729127676547705
QAGYMIIPR	9	Oxidation (M)	_QAGYM(Oxidation (M))IIPR_		QAGYM(1)IIPR		QAGYM(61)IIPR	0	0	1		nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7810668945312	2	532.781502	1063.54845	-0.50531	-0.00026922	0.2761	0.0001471	-0.22921	-0.00012212	532.7816028927816	57.313	1.1667	57.088	56.582	57.749	-0.2248					75	30	3	0	0	0	0.4752	1	6253	6253		60.972	6.1956	1	7227500			61391	18496	43157	43219	66606	66606		582			0.01921802945435047
QAHDYDQPLI	10	Unmodified	_QAHDYDQPLI_					0	0	0			REV__nc|ENSG00000049449|Q15293-2|RCN1	REV__nc|ENSG00000049449|Q15293-2|RCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.576904296875	3	400.527894	1198.56185	0.9013	0.000361	-2.6216	-0.00105	-1.7203	-0.00068902	400.5267436910529	18.013	1.0644	17.882	17.337	18.401	-0.13147					34	21	3	0	0	0	0.03519	1	197	197		16.717	3.2094	1	33704	+		61392	20146	43158	43220	66607	66607					-0.02948667741634381
QAHLLCCSP	9	Unmodified	_QAHLLCCSP_					0	0	0			REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2791442871094	2	486.225505	970.436457	-0.95436	-0.00046403	-2.2432	-0.0010907	-3.1975	-0.0015547	486.2220907810644	50.731	0.13945	50.812	50.71	50.849	0.08099					7	3	3	0	0	0	0.024487	1	5266	5266		17.365	5.1581	1	91630	+		61393	34572	43159	43221	66608	66608					-0.04994374403213442
QAHPGCGRY	9	Unmodified	_QAHPGCGRY_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;ENST00000485061.2_1_13:77667458-77671775:-|nuORF	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.799560546875	2	494.724518	987.434483	-0.25243	-0.00012488	1.1124	0.00055031	0.85992	0.00042543	494.72419468129453	93.28	0.46615	93.287	93.097	93.564	0.0077286					18	10	3	0	0	0	0.024506	1	11797	11797		23.042	0	1	45036			61394	774	43160	43222	66609	66609					-0.059736670967936334
QAHPGCGRY	9	Unmodified	_QAHPGCGRY_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;ENST00000485061.2_1_13:77667458-77671775:-|nuORF	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.724518	987.434483	0.26938	0.00013327	0.046911	2.3208E-05	0.3163	0.00015648	494.72400085698007	93.291	0.50832	93.291	93.093	93.602	0	0.0018992	-0.00045976	NaN	16.473	12	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70506			61395	774	43160	43222							-0.059736670967936334
QAHYDSECY	9	Unmodified	_QAHYDSECY_					0	0	0			REV__nc|ENSG00000173210|O94929-2|ABLIM3	REV__nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2101440429688	2	558.208563	1114.40257	-0.1668	-9.3109E-05	2.2817	0.0012736	2.1149	0.0011805	558.2100081583336	35.145	1.0523	34.929	34.589	35.641	-0.21555					78	26	5	0	0	0	0.59099	3	2624	2624;2633;2644		53.351	9.2347	1	11405000	+		61396	26752	43161	43223	66610;66611;66612	66610					-0.15005124361277922
QAHYDSECY	9	Unmodified	_QAHYDSECY_					0	0	0			REV__nc|ENSG00000173210|O94929-2|ABLIM3	REV__nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2101440429688	2	558.208563	1114.40257	-0.66255	-0.00036984	3.0359	0.0016947	2.3734	0.0013248	558.2102777295997	35.002	0.96864	34.816	34.519	35.488	-0.18675					74	24	5	0	0	0	0.70186	1	2619	2619		45.952	1.4209	1	10341000	+		61397	26752	43161	43223	66613	66613					-0.15005124361277922
QAHYDSECY	9	Unmodified	_QAHYDSECY_					0	0	0			REV__nc|ENSG00000173210|O94929-2|ABLIM3	REV__nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	558.208563	1114.40257	-0.1668	-9.3109E-05	2.2817	0.0012736	2.1149	0.0011805	558.2100081583336	35.145	1.0523	34.929	34.589	35.641	-0.21555	0.05841	-0.0005662	NaN	53.351	78	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11405000	+		61398	26752	43161	43223							-0.15005124361277922
QAIAMYFLP	9	Unmodified	_QAIAMYFLP_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.2713623046875	2	527.275521	1052.53649	-1.0043	-0.00052954	-1.3154	-0.00069359	-2.3197	-0.0012231	527.2721570269189	82.152	1.4219	82.152	81.63	83.051	0					82	33	5	0	0	0	0.4855	1	10257	10257		60.294	1.512	1	6569100			61399	5880	43162	43224	66614	66614					0.012321862022645291
QAIELFEL	8	Unmodified	_QAIELFEL_					0	0	0			REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.762451171875	2	481.7633	961.512048	0.18896	9.1033E-05	0.17881	8.6143E-05	0.36777	0.00017718	481.7630645057321	88.003	0.3868	87.868	87.603	87.99	-0.13462					12	9	2	0	0	0	0.027866	1	10705	10705		25.45	0	1	89377	+		61400	36908	43163	43225	66615	66615					0.029752493203773156
QAIELFEL	8	Unmodified	_QAIELFEL_					0	0	0			REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.7633	961.512048	0.58767	0.00028312	-0.35677	-0.00017188	0.23091	0.00011124	481.76284680756453	88.073	0.53492	88.073	87.805	88.34	0	0.11982	-0.00030225	NaN	25.45	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153680	+		61401	36908	43163	43225							0.029752493203773156
QAIELFEL	8	Unmodified	_QAIELFEL_					0	0	0			REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.7633	961.512048	0.58271	0.00028073	0.026902	1.2961E-05	0.60962	0.00029369	481.7630113768329	88.015	0.56453	87.987	87.738	88.303	-0.027657	0.033607	6.7426E-05	NaN	25.45	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190380	+		61402	36908	43163	43225							0.029752493203773156
QAIELFEL	8	Unmodified	_QAIELFEL_					0	0	0			REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.7633	961.512048	0.5789	0.00027889	-0.37179	-0.00017911	0.2071	9.9776E-05	481.7629212587511	88.042	0.62083	88.061	87.832	88.453	0.018555	0.10755	-0.00031673	NaN	25.45	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302310	+		61403	36908	43163	43225							0.029752493203773156
QAIELFEL	8	Unmodified	_QAIELFEL_					0	0	0			REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.7633	961.512048	0.11198	5.3948E-05	0.4866	0.00023442	0.59858	0.00028837	481.7631533563299	88.027	0.34599	87.848	87.695	88.041	-0.17875	-0.10513	0.00051035	NaN	25.45	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69561	+		61404	36908	43163	43225							0.029752493203773156
QAIILKQV	8	Unmodified	_QAIILKQV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2591857910156	2	456.797478	911.580402	0.30342	0.0001386	0.34425	0.00015725	0.64766	0.00029585	456.79735987889796	61.577	0.49833	61.577	61.334	61.832	0					27	12	3	0	0	0	0.027866	1	7113	7113		53.351	0	1	415230			61405	9617	43164	43226	66616	66616					0.1210753869089558
QAIILKQV	8	Unmodified	_QAIILKQV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2584533691406	2	456.797478	911.580402	0.2352	0.00010744	0.13915	6.3565E-05	0.37435	0.000171	456.79734113216597	61.486	0.52954	61.557	61.355	61.884	0.071125					25	13	2	0	0	0	0.027866	1	7018	7018		45.952	8.7928	1	315360			61406	9617	43164	43226	66617	66617					0.1210753869089558
QAILDLQSEP	10	Unmodified	_QAILDLQSEP_					0	0	0			REV__ENST00000439215.1_1_1:43369124-43369580:+|nuORF	REV__ENST00000439215.1_1_1:43369124-43369580:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2850341796875	2	557.292953	1112.57135	-0.21951	-0.00012233	3.2432	0.0018074	3.0237	0.0016851	557.7979060465707	78.125	0.63763	77.97	77.659	78.297	-0.15591					16	14	2	0	0	0	0.03519	1	9339	9339		23.523	0	1	41024	+		61407	32505	43165	43227	66618	66618					0.019571005439274813
QAINKKSGNGG	11	Unmodified	_QAINKKSGNGG_					0	0	0		ENSG00000138735|ENST00000354960|PDE5A;nc|ENSG00000138735|O76074-2|PDE5A	ENSG00000138735|ENST00000354960|PDE5A	ENSG00000138735|ENST00000354960|PDE5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8048706054688	2	537.288537	1072.56252	0.88953	0.00047793	-4.2926	-0.0023063	-3.403	-0.0018284	537.286173358525	37.08	0.34229	37.08	36.927	37.269	0					16	8	2	0	0	0	0.024736	1	3019	3019		29.17	6.1276	1	296310			61408	5273	43166	43228	66619	66619					0.029141716981030186
QAIPALPQGL	10	Unmodified	_QAIPALPQGL_					0	0	0			REV__ENST00000495002.5_1_19:54710350-54711440:+|nuORF	REV__ENST00000495002.5_1_19:54710350-54711440:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2978210449219	2	504.297842	1006.58113	-0.93965	-0.00047387	0.75566	0.00038108	-0.18399	-9.2787E-05	504.29810868059883	61.803	1.0546	61.625	61.329	62.383	-0.17781					91	26	5	0	0	0	1.0393	1	6962	6962		40.778	5.1599	1	4994100	+		61409	33788	43167	43229	66620	66620					0.0781033333993264
QAIPVRLKILL	11	Unmodified	_QAIPVRLKILL_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	632.4247436523438	2	632.42919	1262.84383	1.3725	0.00086802	0.11583	7.3255E-05	1.4883	0.00094127	632.4288029042639	107.71	0.34282	107.71	107.57	107.91	0					33	17	3	0	0	0	1.0483	1	13822	13822		25.574	6.4705	1	2468000			61410	7953	43168	43230	66621	66621					0.22291954075762987
QAIPVRLKILL	11	Unmodified	_QAIPVRLKILL_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	632.42724609375	2	632.42919	1262.84383	-0.71721	-0.00045359	0.65216	0.00041245	-0.065052	-4.1141E-05	632.4291733937903	107.71	0.27412	107.59	107.48	107.76	-0.1238					26	13	3	0	0	0	1.0651	2	13380	13380;13385		20.947	5.8596	1	2633100			61411	7953	43168	43230	66622;66623	66622					0.22291954075762987
QAIQISKL	8	Unmodified	_QAIQISKL_					0	0	0			REV__ENST00000321792.5_1_1:89449646-89449685:-|nuORF	REV__ENST00000321792.5_1_1:89449646-89449685:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7793273925781	2	450.779285	899.544017	-0.27276	-0.00012295	0.68588	0.00030918	0.41312	0.00018623	450.7794160478321	25.856	0.59236	25.856	25.611	26.203	0					31	13	3	0	0	0	0.62178	1	1268	1268		74.255	0	1	506200	+		61412	30349	43169	43231	66624	66624					0.09022661794188025
QAITEVQLL	9	Unmodified	_QAITEVQLL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.778564453125	2	507.795132	1013.57571	-0.14545	-7.386E-05	-0.20185	-0.0001025	-0.34731	-0.00017636	507.7949601531809	78.817	0.78926	78.836	78.524	79.314	0.018677					40	18	4	0	0	0	0.024017	1	9701	9701		75.043	14.925	1	1104700	+		61413	24805	43170	43232	66625	66625					0.06946609757483202
QAIVSPPSAF	10	Unmodified	_QAIVSPPSAF_					0	0	0			REV__DUOX2|p.D1071V|1|0.26|ENSG00000140279|chr15:45099865-45099865|T/A|missense_variant	REV__DUOX2|p.D1071V|1|0.26|ENSG00000140279|chr15:45099865-45099865|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7730407714844	2	508.7742	1015.53385	-1.1448	-0.00058246	-0.5611	-0.00028548	-1.7059	-0.00086794	508.7731511673196	21.958	0.72628	22.029	21.684	22.411	0.071487					42	14	5	0	0	0	1.0781	1	680	680		35.618	0	1	420300	+		61414	19716	43171	43233	66626	66626					0.026700540689603258
QAKEELKLL	9	Unmodified	_QAKEELKLL_					0	0	0		nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-2|FAM135A	nc|ENSG00000082269|Q9P2D6-2|FAM135A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3421020507812	2	536.324057	1070.63356	-0.64599	-0.00034646	-2.9753	-0.0015957	-3.6213	-0.0019422	536.3221490806311	27.256	0.20673	27.014	26.869	27.076	-0.24217					6	4	2	0	0	0	0.024541	1	1474	1474		17.365	0	1	67313			61415	1730	43172	43234	66627	66627					0.10106871682887686
QAKILLLAE	9	Unmodified	_QAKILLLAE_					0	0	0			REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.81524658203125	2	499.815867	997.617182	0.13525	6.7601E-05	-0.94614	-0.0004729	-0.81089	-0.00040529	499.8154872583837	104.94	0.36191	104.81	104.61	104.97	-0.12444					17	11	2	0	0	0	0.94809	1	13060	13060		29.15	6.1071	1	47687	+		61416	21389	43173	43235	66628	66628					0.11827790516804271
QAKILLLAE	9	Unmodified	_QAKILLLAE_					0	0	0			REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	499.815867	997.617182	0.45643	0.00022813	-0.77165	-0.00038568	-0.31522	-0.00015755	499.8154339478893	105.12	0.48555	105.12	104.92	105.41	0	0.067636	-0.00018146	NaN	29.15	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293930	+		61417	21389	43173	43235							0.11827790516804271
QAKILLLAE	9	Unmodified	_QAKILLLAE_					0	0	0			REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.815867	997.617182	-0.017151	-8.5723E-06	-0.24123	-0.00012057	-0.25838	-0.00012914	499.8157776847597	105.09	0.5919	105.09	104.84	105.43	0.00097656	0.045759	0.00034876	NaN	29.15	36	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335760	+		61418	21389	43173	43235							0.11827790516804271
QAKILLLAE	9	Unmodified	_QAKILLLAE_					0	0	0			REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.815867	997.617182	0.19625	9.8089E-05	-0.63836	-0.00031906	-0.44212	-0.00022098	499.8155489924332	105.18	0.71397	105.17	104.92	105.63	-0.0015945	0.12482	-4.8227E-05	NaN	29.15	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256740	+		61419	21389	43173	43235							0.11827790516804271
QAKILLLAE	9	Unmodified	_QAKILLLAE_					0	0	0			REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	REV__ENST00000565343.1_1_16:53689488-53692740:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	499.815867	997.617182	0.13525	6.7601E-05	-0.94614	-0.0004729	-0.81089	-0.00040529	499.8154872583837	104.94	0.36191	104.81	104.61	104.97	-0.12444	-0.23821	-0.00035589	NaN	29.15	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47687	+		61420	21389	43173	43235							0.11827790516804271
QAKKAKLDL	9	Unmodified	_QAKKAKLDL_					0	0	0			REV__ENSG00000205856|ENST00000382097|C22orf42	REV__ENSG00000205856|ENST00000382097|C22orf42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8001708984375	2	507.818941	1013.62333	-0.35349	-0.00017951	-1.3163	-0.00066842	-1.6698	-0.00084793	508.3210118222405	31.175	0.36246	30.934	30.711	31.073	-0.24109					14	8	2	0	0	0	0.022083	1	2032	2032		99.375	6.1795	1	70730	+		61421	28694	43174	43236	66629	66629					0.1170630874833023
QAKKAKLDL	9	Unmodified	_QAKKAKLDL_					0	0	0			REV__ENSG00000205856|ENST00000382097|C22orf42	REV__ENSG00000205856|ENST00000382097|C22orf42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.80023193359375	2	507.818941	1013.62333	-0.38454	-0.00019528	-3.8335	-0.0019467	-4.218	-0.002142	507.81698448966966	31.14	0.20027	30.987	30.806	31.006	-0.15231					6	4	2	0	0	0	0.023181	1	2013	2013		82.305	21.333	1	109850	+		61422	28694	43174	43236	66630	66630					0.1170630874833023
QAKLKQNV	8	Unmodified	_QAKLKQNV_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2805480957031	2	464.782359	927.550165	0.28722	0.0001335	-3.6406	-0.0016921	-3.3534	-0.0015586	464.78063032261383	40.795	1.0128	40.818	40.311	41.324	0.023003					59	28	3	0	0	0	0.027866	1	3570	3570		30.504	0	1	2883300			61423	4485;14972	43175	43237	66631	66631					0.08349180025697933
QAKLYANEFAT	11	Unmodified	_QAKLYANEFAT_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	419.1658020019531	3	419.215427	1254.62445	-0.37688	-0.00015799	-2.0017	-0.00083914	-2.3786	-0.00099713	419.2145435205821	23.067	0.50385	22.882	22.692	23.196	-0.18539					28	10	4	0	0	0	0.024734	1	875	875		27.644	0	1	155890	+		61424	24671	43176	43238	66632	66632					0.0073247832656306855
QAKNMHNVL	9	Oxidation (M)	_QAKNM(Oxidation (M))HNVL_		QAKNM(1)HNVL		QAKNM(66)HNVL	0	0	1		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7733764648438	2	535.774208	1069.53386	-0.29263	-0.00015679	-2.0847	-0.001117	-2.3774	-0.0012737	535.7730676876516	41.453	0.90016	41.453	41.153	42.053	0					62	25	3	0	0	0	0.40179	1	3716	3716		65.803	11.027	1	18141000			61425	3658	43177	43239	66633	66633		139			0.0018773079727907316
QAKSKQAIL	9	Unmodified	_QAKSKQAIL_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.8033752441406	2	493.803291	985.59203	-0.091808	-4.5335E-05	-0.02367	-1.1688E-05	-0.11548	-5.7023E-05	493.80319864929896	23.332	0.83235	23.13	22.78	23.612	-0.20193					49	18	4	0	0	0	0.23085	1	916	916		84.916	23.944	1	2039900			61426	2833	43178	43240	66634	66634					0.09865735714231505
QAKSKQAIL	9	Unmodified	_QAKSKQAIL_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.80316162109375	2	493.803291	985.59203	-0.29694	-0.00014663	0.11928	5.8901E-05	-0.17766	-8.7729E-05	493.8032559448605	23.314	0.68254	23.134	22.836	23.519	-0.17989					41	15	4	0	0	0	0.35646	1	904	904		68.787	0	1	2163500			61427	2833	43178	43240	66635	66635					0.09865735714231505
QAKSKQAIL	9	Unmodified	_QAKSKQAIL_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.803291	985.59203	-0.76712	-0.00037881	0.26894	0.0001328	-0.49818	-0.000246	493.80302831274406	22.845	0.2326	22.919	22.791	23.024	0.073954	-0.15269	0.00086766	NaN	84.916	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19337			61428	2833	43178	43240							0.09865735714231505
QAKSLDLQV	9	Unmodified	_QAKSLDLQV_					0	0	0			REV__nc|ENSG00000100479|P56282-2|POLE2	REV__nc|ENSG00000100479|P56282-2|POLE2	MSMS	OPSCC_39_ClassI_Rep-2	2	501.2861633300781	2	501.284931	1000.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.165	1	45.016	44.516	45.516	-0.1488								0	0	0	0.3421	1	4348	4348		65.465	3.358	1		+		61429	21124	43179	43241	66636	66636					0.05505439097657927
QAKVHHVK	8	Unmodified	_QAKVHHVK_					0	0	0		nc|ENSG00000065675|Q04759-3|PRKCQ;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ	nc|ENSG00000065675|Q04759-3|PRKCQ	nc|ENSG00000065675|Q04759-3|PRKCQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.7555236816406	2	473.782693	945.550834	0.049336	2.3375E-05	-4.007	-0.0018984	-3.9577	-0.0018751	473.78069503482976	54.663	0.34879	54.432	54.181	54.53	-0.23087					11	9	2	0	0	0	0.027866	1	5815	5815		12.207	0	1	125200			61430	1318	43180	43242	66637	66637					0.07588019465413254
QAKVTNTQI	9	Unmodified	_QAKVTNTQI_					0	0	0		nc|ENSG00000116675|O75061-3|DNAJC6;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7845458984375	2	501.782556	1001.55056	-0.55112	-0.00027654	2.8691	0.0014397	2.318	0.0011631	501.7837757406666	72.139	1.5315	71.941	71.428	72.96	-0.19811					61	36	3	0	0	0	0.62163	1	8466	8466		51.335	1.7994	1	3791800			61431	3562	43181	43243	66638	66638					0.04984554954910436
QAKVVLKSK	9	Unmodified	_QAKVVLKSK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2905578613281	2	500.829309	999.644065	0.12687	6.3542E-05	-1.8452	-0.00092412	-1.7183	-0.00086058	500.8279408298483	19.812	0.48255	19.651	19.48	19.962	-0.16079					12	9	2	0	0	0	0.024541	1	470	470		16.473	0	1	21444			61432	7172	43182	43244	66639	66639					0.1442289912798742
QAKVVLKSK	9	Unmodified	_QAKVVLKSK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.829309	999.644065	0.96199	0.00048179	-2.7847	-0.0013947	-1.8227	-0.00091287	500.8275388487905	19.915	0.43429	19.715	19.554	19.988	-0.2001	0.044323	-0.001104	NaN	16.473	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13155			61433	7172	43182	43244							0.1442289912798742
QAKVVLKSK	9	Unmodified	_QAKVVLKSK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.829309	999.644065	0.51898	0.00025992	-0.78981	-0.00039556	-0.27083	-0.00013564	500.8287746173209	19.879	0.24669	19.645	19.523	19.769	-0.23345	-0.025061	0.00089422	NaN	16.473	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15234			61434	7172	43182	43244							0.1442289912798742
QAKYLVGLNL	10	Unmodified	_QAKYLVGLNL_					0	0	0		SLC26A2|p.L273V|1|0.16|ENSG00000155850|chr5:149980410-149980410|C/G|missense_variant	SLC26A2|p.L273V|1|0.16|ENSG00000155850|chr5:149980410-149980410|C/G|missense_variant	SLC26A2|p.L273V|1|0.16|ENSG00000155850|chr5:149980410-149980410|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8319702148438	2	559.832049	1117.64954	-0.66156	-0.00037036	0.59905	0.00033536	-0.06251	-3.4995E-05	559.832158678196	78.962	1.7548	78.77	78.422	80.177	-0.1921					114	41	4	0	0	0	0.88896	1	9784	9784		54.776	0	1	3397800			61435	37881	43183	43245	66640	66640					0.09542577919796713
QALALSKEY	9	Unmodified	_QALALSKEY_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121747778-121756274:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;ENST00000545218.5_1_12:121755897-121756339:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.766357421875	2	511.779482	1021.54441	1.7731	0.00090744	3.0232	0.0015472	4.7963	0.0024547	512.2822324969043	24.762	0.39335	24.581	24.374	24.767	-0.18089					17	8	3	0	0	0	0.023635	1	1062	1062		87.754	10.98	1	108110			61436	1891	43184	43246	66641	66641					0.03450036723370431
QALALSKEY	9	Unmodified	_QALALSKEY_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121747778-121756274:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF;ENST00000545218.5_1_12:121755897-121756339:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.779482	1021.54441	-0.27667	-0.00014159	5.0534	0.0025862	4.7768	0.0024446	512.2833052452379	24.708	0.43801	24.533	24.383	24.821	-0.17484	-0.023991	0.0011703	NaN	87.754	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87850			61437	1891	43184	43246							0.03450036723370431
QALCLSSIY	9	Unmodified	_QALCLSSIY_					0	0	0		ENST00000468862.5_1_3:159711454-159713343:+|nuORF	ENST00000468862.5_1_3:159711454-159713343:+|nuORF	ENST00000468862.5_1_3:159711454-159713343:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7714538574219	2	499.254785	996.495018	-0.23427	-0.00011696	-0.09714	-4.8498E-05	-0.33141	-0.00016546	499.2548442188068	31.479	0.33385	31.238	31.112	31.446	-0.24109					11	8	2	0	0	0	0.024495	1	2086	2086		26.693	19.5	1	110130			61438	14888	43185	43247	66642	66642					-0.003369945570739219
QALDLSWNA	9	Unmodified	_QALDLSWNA_					0	0	0		ENST00000487787.5_1_1:202275897-202288332:+|nuORF;nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2843017578125	2	509.253631	1016.49271	-0.71879	-0.00036605	-2.3862	-0.0012152	-3.105	-0.0015812	509.2535372146044	46.487	0.39143	46.285	46.081	46.473	-0.20192					17	9	3	0	0	0	0.024374	1	4498	4498		49.442	25.239	1	371840			61439	4678	43186	43248	66643	66643					-0.014877069705221402
QALDLSWNA	9	Unmodified	_QALDLSWNA_					0	0	0		ENST00000487787.5_1_1:202275897-202288332:+|nuORF;nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.253631	1016.49271	-0.24099	-0.00012272	1.3046	0.00066439	1.0637	0.00054167	509.25425202646164	46.41	1.0354	46.461	46.063	47.099	0.051395	0.087989	0.00032519	NaN	30.318	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2239900			61440	4678	43186	43248							-0.014877069705221402
QALEKTLKD	9	Unmodified	_QALEKTLKD_					0	0	0			REV__ENSG00000138311|ENST00000395254|ZNF365	REV__ENSG00000138311|ENST00000395254|ZNF365	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2413940429688	2	523.298039	1044.58152	-0.55022	-0.00028793	-0.5676	-0.00029702	-1.1178	-0.00058495	523.297993758709	30.548	0.46086	30.37	30.164	30.625	-0.17818					18	10	2	0	0	0	0.024477	1	1927	1927		20.947	0	1	554220	+		61441	23839	43187	43249	66644	66644					0.06101708269147821
QALELPLRI	9	Unmodified	_QALELPLRI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.3150634765625	2	526.826766	1051.63898	-0.35534	-0.0001872	0.02481	1.3071E-05	-0.33053	-0.00017413	526.8265667680206	74.576	0.20979	74.586	74.439	74.648	0.0096512					7	4	2	0	0	0	0.024466	1	9057	9057		39.253	7.298	1	277720			61442	4580	43188	43250	66645	66645					0.11522595265364544
QALFLRLEA	9	Unmodified	_QALFLRLEA_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8115234375	2	530.811116	1059.60768	-1.3008	-0.0006905	0.47755	0.00025349	-0.82328	-0.00043701	530.811366539761	61.561	0.92776	61.383	60.995	61.923	-0.17781					54	22	4	0	0	0	0.62163	1	6890	6890		51.335	7.2187	1	1666600	+		61443	25347	43189	43251	66646	66646					0.0802602223127451
QALFWRLT	8	Unmodified	_QALFWRLT_					0	0	0		ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	ENST00000265052.9_1_3:127409300-127409504:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.300537109375	2	517.792727	1033.5709	-0.58032	-0.00030049	-3.8311	-0.0019837	-4.4115	-0.0022842	517.7905323422157	30.44	0.67588	30.196	29.948	30.624	-0.24415					29	15	3	0	0	0	0.027866	1	1908	1908		20.947	0	1	568210			61444	11582	43190	43252	66647	66647					0.05545770405365147
QALHLDQV	8	Unmodified	_QALHLDQV_					0	0	0			REV__ENSG00000125505|ENST00000245615|MBOAT7	REV__ENSG00000125505|ENST00000245615|MBOAT7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.2507019042969	2	462.250892	922.48723	-0.37947	-0.00017541	-0.22533	-0.00010416	-0.6048	-0.00027957	462.2507152282238	30.387	1.0917	30.143	29.82	30.911	-0.24415					63	25	4	0	0	0	0.97794	1	1957	1957		40.778	0.20554	1	5402100	+		61445	22826	43191	43253	66648	66648					0.02288614237670572
QALHQFQP	8	Unmodified	_QALHQFQP_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000536260.5_1_16:16412841-16418555:+|nuORF;ENST00000568591.5_1_16:2156634-2167660:-|nuORF;ENST00000525846.6_1_16:18437791-18443539:-|nuORF;ENST00000569983.5_1_16:2156634-2162976:-|nuORF;ENST00000565639.6_1_16:2156634-2163199:-|nuORF;ENST00000458669.1_1_16:16412841-16418244:+|nuORF;ENST00000483731.5_1_16:2156634-2163846:-|nuORF;ENST00000472413.5_1_16:15016937-15019904:+|nuORF;ENST00000534164.5_1_16:15014190-15019904:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF	ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7488098144531	2	484.751059	967.487565	-0.010906	-5.2866E-06	-1.8647	-0.00090391	-1.8756	-0.0009092	484.7491431145462	69.946	0.2924	69.695	69.608	69.9	-0.25063					9	6	2	0	0	0	0.027866	1	8143	8143		25.45	0	1	54851			61446	850;16288	43192	43254	66649	66649					0.0025203395751987046
QALKQGRW	8	Unmodified	_QALKQGRW_					0	0	0			REV__ENST00000370128.8_1_1:100733748-100733790:+|nuORF	REV__ENST00000370128.8_1_1:100733748-100733790:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7763366699219	2	493.780151	985.545748	0.073913	3.6497E-05	-1.1425	-0.00056417	-1.0686	-0.00052767	493.77953820381595	52.254	0.65693	52.254	51.977	52.634	0					29	16	2	0	0	0	0.027866	1	5620	5620		18.324	0	1	1231000	+		61447	31112	43193	43255	66650	66650					0.05239715602806427
QALPTYARSF	10	Unmodified	_QALPTYARSF_					0	0	0		ENST00000470223.1_1_1:27661789-27661954:+|nuORF	ENST00000470223.1_1_1:27661789-27661954:+|nuORF	ENST00000470223.1_1_1:27661789-27661954:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.8046264648438	2	577.303655	1152.59276	-0.34957	-0.00020181	0.42064	0.00024284	0.071071	4.103E-05	577.8040487252783	102.3	0.41904	102.17	102.04	102.45	-0.12666					15	9	2	0	0	0	1.0122	1	12727	12727		44.377	1.981	1	68978			61448	14927	43194	43256	66651	66651					0.02256530363274578
QALPWVRYI	9	Unmodified	_QALPWVRYI_					0	0	0		nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000072958|ENST00000291439|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENST00000592703.1_1_19:16344886-16345243:+|nuORF	nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000129354|ENST00000250244|AP1M2;ENST00000592703.1_1_19:16344886-16345243:+|nuORF	nc|ENSG00000072958|Q9BXS5-2|AP1M1	MSMS	OPSCC_40_ClassI_Rep-2	5	573.3204956054688	2	573.326934	1144.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.169	1	76.917	76.417	77.417	-0.25162								0	0	0	0.51175	1	9183	9183		51.335	18.523	1				61449	1497;4345;17380	43195	43257	66652	66652					0.07278014985240588
QALQQWLGQLE	11	Unmodified	_QALQQWLGQLE_					0	0	0		nc|ENSG00000204614|Q6P9F5-2|TRIM40	nc|ENSG00000204614|Q6P9F5-2|TRIM40	nc|ENSG00000204614|Q6P9F5-2|TRIM40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.5662536621094	3	438.56646	1312.67755	-1.1075	-0.00048572	1.0997	0.00048231	-0.0077594	-3.403E-06	438.56691375139013	55.705	1.0303	55.548	55.145	56.176	-0.15655					82	27	5	0	0	0	0.97559	1	5988	5988		42.243	9.492	1	4593400			61450	18663	43196	43258	66653	66653					0.03371856109242799
QALRHDCD	8	Unmodified	_QALRHDCD_					0	0	0		ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	ENSG00000078814|ENST00000262873|MYH7B	ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.793212890625	2	479.213983	956.413413	0.069621	3.3363E-05	-0.14541	-6.9681E-05	-0.075785	-3.6317E-05	479.2135025434574	54.37	0.54655	54.37	54.109	54.656	0					30	15	3	0	0	0	0.027866	1	5897	5897		12.207	0	1	331480			61451	1647	43197	43259	66654	66654					-0.0665367719632286
QALRLRAR	8	Unmodified	_QALRLRAR_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2708435058594	2	492.314692	982.614831	-0.82857	-0.00040792	3.1226	0.0015373	2.294	0.0011294	492.3162691260903	64.967	0.68512	64.765	64.461	65.146	-0.20254					40	16	4	0	0	0	0.027866	1	7364	7364		11.511	0.64546	1	385820			61452	913	43198	43260	66655	66655					0.12282799622357743
QALRMSVEA	9	Unmodified	_QALRMSVEA_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q9QWL7	ENSG00000171345|ENST00000361566|KRT19;CON__Q9QWL7	CON__Q9QWL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7974548339844	2	502.763309	1003.51206	-0.95433	-0.0004798	0.88099	0.00044293	-0.073337	-3.6871E-05	502.76353744986864	38.183	0.67883	38.1	37.813	38.492	-0.082516					52	18	4	0	0	0	0.024447	1	3225	3225		25.574	9.9322	1	1165200		+	61453	514;573	43199	43261	66656	66656					0.01044926048734851
QALRMSVEA	9	Unmodified	_QALRMSVEA_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q9QWL7	ENSG00000171345|ENST00000361566|KRT19;CON__Q9QWL7	CON__Q9QWL7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.763309	1003.51206	-1.1118	-0.00055897	1.1624	0.00058444	0.050656	2.5468E-05	502.76366515045277	38.302	0.58581	38.302	37.969	38.555	0	0.033703	-1.0658E-05	NaN	25.574	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1502100		+	61454	514;573	43199	43261							0.01044926048734851
QALRMSVEA	9	Unmodified	_QALRMSVEA_					0	0	0		ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q9QWL7	ENSG00000171345|ENST00000361566|KRT19;CON__Q9QWL7	CON__Q9QWL7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	502.763309	1003.51206	-1.6163	-0.00081264	1.5316	0.00077005	-0.084702	-4.2585E-05	502.7638860454712	38.376	0.70818	38.403	38.023	38.731	0.027279	0.13447	0.00036058	NaN	25.574	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1200200		+	61455	514;573	43199	43261							0.01044926048734851
QALRPHGL	8	Unmodified	_QALRPHGL_					0	0	0		nc|ENSG00000243477|O43820-2|HYAL3;ENSG00000186792|ENST00000336307|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	446.26141357421875	2	446.261594	890.508634	-0.2987	-0.0001333	0.36709	0.00016382	0.068394	3.0522E-05	446.26161642931294	26.221	1.7819	26.221	25.211	26.993	0					101	42	4	0	0	0	0.81662	1	1334	1334		57.811	6.4758	1	3088100			61456	9576	43200	43262	66657	66657					0.05900044057045761
QALRPHGL	8	Unmodified	_QALRPHGL_					0	0	0		nc|ENSG00000243477|O43820-2|HYAL3;ENSG00000186792|ENST00000336307|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.2615051269531	2	446.261594	890.508634	-0.2723	-0.00012152	0.31383	0.00014005	0.041534	1.8535E-05	446.2616095578396	26.238	1.5396	26.215	25.403	26.943	-0.023088					94	36	4	0	0	0	0.81662	1	1325	1325		57.811	4.4598	1	2940600			61457	9576	43200	43262	66658	66658					0.05900044057045761
QALRPHGL	8	Unmodified	_QALRPHGL_					0	0	0		nc|ENSG00000243477|O43820-2|HYAL3;ENSG00000186792|ENST00000336307|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.261474609375	2	446.261594	890.508634	0.079727	3.5579E-05	-0.022881	-1.0211E-05	0.056846	2.5368E-05	446.2614912023332	26.066	1.4586	26.148	25.256	26.714	0.081293					84	34	4	0	0	0	0.68535	1	1247	1247		68.485	5.1784	1	3009800			61458	9576	43200	43262	66659	66659					0.05900044057045761
QALRQRRA	8	Unmodified	_QALRQRRA_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.776611328125	2	499.801949	997.589344	0.016722	8.3578E-06	-3.3971	-0.0016979	-3.3804	-0.0016895	499.7978879436717	79.332	0.73941	79.351	78.946	79.685	0.018677					59	17	5	0	0	0	0.027866	1	9803	9803		40.573	0	1	396920	+		61459	26663	43201	43263	66660	66660					0.09045325099941692
QALSLHSSM	9	Unmodified	_QALSLHSSM_					0	0	0			REV__ENSG00000196155|ENST00000379344|PLEKHG4	REV__ENSG00000196155|ENST00000379344|PLEKHG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7648620605469	2	487.242209	972.469866	0.051	2.4849E-05	0.64545	0.00031449	0.69645	0.00033934	487.24238190180574	19.758	0.95801	19.758	19.218	20.176	0					26	19	2	0	0	0	0.02435	1	438	438		42.396	0	1	32279	+		61460	28135	43202	43264	66661	66661					-0.01747049359630637
QALTPTKSIV	10	Unmodified	_QALTPTKSIV_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF;REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2819213867188	2	529.316232	1056.61791	0.15979	8.4578E-05	-0.15769	-8.347E-05	0.002094	1.1084E-06	529.8177421947948	56.592	0.63135	56.367	55.99	56.621	-0.22479					27	15	3	0	0	0	0.03519	1	6073	6073		35.152	13.192	1	176290	+		61461	25757;34293	43203	43265	66662	66662					0.0918658516582127
QALTPTKSIV	10	Unmodified	_QALTPTKSIV_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF;REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.316232	1056.61791	-0.37944	-0.00020085	0.16038	8.4894E-05	-0.21906	-0.00011595	529.316550571164	56.553	0.27711	56.386	56.204	56.482	-0.1672	0.00937	0.0001184	NaN	35.152	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162680	+		61462	25757;34293	43203	43265							0.0918658516582127
QALVDRPL	8	Unmodified	_QALVDRPL_					0	0	0			REV__ENSG00000146242|ENST00000369750|TPBG	REV__ENSG00000146242|ENST00000369750|TPBG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.26947021484375	2	456.269084	910.523616	-0.28056	-0.00012801	0.53075	0.00024216	0.25019	0.00011415	456.2691046241075	25.549	0.95764	25.549	25.285	26.243	0					47	22	3	0	0	0	0.68535	1	1221	1221		68.485	7.5128	1	932360	+		61463	24472	43204	43266	66663	66663					0.06477491134376123
QAMCGEFSIT	10	Unmodified	_QAMCGEFSIT_					0	0	0			REV__ENSG00000155249|ENST00000641172|OR4K1	REV__ENSG00000155249|ENST00000641172|OR4K1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.7797241210938	2	543.73336	1085.45217	-1.1567	-0.00062893	0.339	0.00018433	-0.81769	-0.0004446	543.7334448324102	34.846	1.221	34.66	34.039	35.26	-0.18675					42	30	2	0	0	0	0.03519	1	2626	2626		32.812	8.6097	1	330590	+		61464	24997	43205	43267	66664	66664					-0.08714132676823283
QAMELNQFNTL	11	Unmodified	_QAMELNQFNTL_					0	0	0			REV__ENSG00000165953|ENST00000677451|SERPINA12	REV__ENSG00000165953|ENST00000677451|SERPINA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2734375	3	436.879939	1307.61799	-0.023641	-1.0328E-05	2.6623	0.0011631	2.6386	0.0011528	436.88111793340454	42.725	0.53299	42.499	42.26	42.793	-0.22597					21	13	2	0	0	0	0.024742	1	3835	3835		20.315	0	1	128340	+		61465	25949	43206	43268	66665	66665					-0.023517828964486398
QAMGPPAAAPS	11	Unmodified	_QAMGPPAAAPS_					0	0	0			REV__ENST00000404933.6_1_X:21958871-21985334:+|nuORF	REV__ENST00000404933.6_1_X:21958871-21985334:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77154541015625	2	499.242209	996.469866	-0.74159	-0.00037023	-4.1876	-0.0020906	-4.9292	-0.0024609	499.2401445946939	28.294	0.43789	28.142	27.922	28.36	-0.15195					15	10	2	0	0	0	0.024762	1	1642	1642		18.262	8.5564	1	138830	+		61466	31903	43207	43269	66666	66666					-0.028510493596513697
QAMSVTCEW	9	Oxidation (M)	_QAM(Oxidation (M))SVTCEW_		QAM(1)SVTCEW		QAM(99)SVTCEW	0	0	1			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.773193359375	2	535.71771	1069.42087	-0.55953	-0.00029975	0.14785	7.9205E-05	-0.41168	-0.00022055	535.7177008032875	41.558	0.13933	41.581	41.53	41.67	0.023006					5	3	2	0	0	0	0.022083	1	3700	3700		99.375	58.597	1	42023	+		61467	19991	43208	43270	66667	66667		618			-0.1110670571092669
QANARLNSL	9	Unmodified	_QANARLNSL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7721252441406	2	493.772522	985.530492	0.25808	0.00012743	-1.4168	-0.00069959	-1.1588	-0.00057216	493.7718203994205	32.88	0.85462	32.943	32.69	33.544	0.062885					45	22	3	0	0	0	0.19099	1	2266	2266		90.37	2.6734	1	8593700			61468	7239	43209	43271	66668	66668					0.03714804014953188
QANHNLRE	8	Unmodified	_QANHNLRE_					0	0	0		nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	nc|ENSG00000142405|P59046-2|NLRP12	nc|ENSG00000142405|P59046-2|NLRP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2713623046875	2	491.246672	980.478791	1.0636	0.0005225	3.0059	0.0014766	4.0695	0.0019991	491.2478629319049	63.127	0.75943	63.181	62.974	63.733	0.054104					24	20	2	0	0	0	0.027866	1	7274	7274		35.618	11.416	1	191020			61469	5556	43210	43272	66669	66669					-0.012229396789621205
QANLAGLFPE	10	Unmodified	_QANLAGLFPE_					0	0	0		ENSG00000142513|ENST00000270593|ACP4	ENSG00000142513|ENST00000270593|ACP4	ENSG00000142513|ENST00000270593|ACP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.76123046875	2	530.277106	1058.53966	-0.55278	-0.00029312	0.13137	6.9662E-05	-0.42141	-0.00022346	530.2765933824642	45.01	0.37941	44.799	44.677	45.056	-0.21109					16	9	3	0	0	0	0.03519	1	4249	4249		25.574	8.2091	1	113510			61470	5566	43211	43273	66670	66670					0.012731525806202626
QANLAGLFPE	10	Unmodified	_QANLAGLFPE_					0	0	0		ENSG00000142513|ENST00000270593|ACP4	ENSG00000142513|ENST00000270593|ACP4	ENSG00000142513|ENST00000270593|ACP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.277106	1058.53966	-0.97386	-0.00051642	-1.8721	-0.00099271	-2.8459	-0.0015091	530.7764837912049	45.232	0.10522	45.083	45.009	45.115	-0.1488	0.14204	-0.0010212	NaN	19.104	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40536			61471	5566	43211	43273							0.012731525806202626
QAPHRHLA	8	Unmodified	_QAPHRHLA_					0	0	0			REV__ENST00000538872.5_1_12:248427-266301:+|nuORF	REV__ENST00000538872.5_1_12:248427-266301:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2805480957031	2	465.256843	928.499132	0.45634	0.00021231	-1.8108	-0.00084249	-1.3545	-0.00063017	465.25587960765927	40.895	0.86659	40.918	40.527	41.394	0.023006					52	24	3	0	0	0	0.027866	1	3570	3570		26.796	0	1	2416700	+		61472	34725	43212	43274	66671	66671					0.03202275771502627
QAPKPHPKGE	10	Unmodified	_QAPKPHPKGE_					0	0	0		nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8101196289062	2	544.795998	1087.57744	-1.4422	-0.0007857	4.442	0.00242	2.9998	0.0016343	544.7981353805507	44.649	0.64294	44.438	44.15	44.793	-0.21109					42	16	3	0	0	0	0.03519	1	4129	4129		14.137	0	1	1003600			61473	18516	43213	43275	66672	66672					0.03715663566094918
QAPPGHCPPLA	11	Unmodified	_QAPPGHCPPLA_					0	0	0		ENST00000301015.13_2_16:88798115-88798250:-|nuORF	ENST00000301015.13_2_16:88798115-88798250:-|nuORF	ENST00000301015.13_2_16:88798115-88798250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.2704467773438	2	544.271301	1086.52805	-0.46885	-0.00025518	-3.4141	-0.0018582	-3.8829	-0.0021134	544.2693182703814	70.322	0.56625	70.051	69.7	70.266	-0.27123					42	13	4	0	0	0	1.1017	1	8202	8202		10.866	2.0432	1	3885000			61474	11917	43214	43276	66673	66673					-0.011753677143815366
QAPPKPIPS	9	Unmodified	_QAPPKPIPS_					0	0	0		ENSG00000172771|ENST00000505956|EFCAB12	ENSG00000172771|ENST00000505956|EFCAB12	ENSG00000172771|ENST00000505956|EFCAB12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.724853515625	2	467.77146	933.528367	0.14247	6.6643E-05	-0.02769	-1.2953E-05	0.11478	5.369E-05	467.77124127432006	46.821	0.52358	46.821	46.587	47.111	0					27	13	3	0	0	0	0.024344	1	4679	4679		64.207	16.292	1	413130			61475	8305	43215	43277	66674	66674					0.058943752771256186
QAPPRSTQW	9	Unmodified	_QAPPRSTQW_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7730102539062	2	535.772522	1069.53049	-0.29263	-0.00015679	1.061	0.00056845	0.76837	0.00041167	535.7730676876516	41.453	0.90016	41.453	41.153	42.053	0					62	25	3	0	0	0	0.31037	2	3752	3728;3752		74.255	5.3419	1	18141000	+		61476	27216	43216	43278	66675;66676	66676					-0.0014919598504548048
QAPPRSTQW	9	Unmodified	_QAPPRSTQW_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.773193359375	2	535.772522	1069.53049	-0.5785	-0.00030994	1.3218	0.00070816	0.74326	0.00039822	535.7732195467238	41.591	1.4273	41.614	41.324	42.751	0.023006					99	40	4	0	0	0	0.56934	2	3700	3700;3740		54.776	1.5253	1	18587000	+		61477	27216	43216	43278	66677;66678	66677					-0.0014919598504548048
QAPPTPDKV	9	Unmodified	_QAPPTPDKV_					0	0	0		ENST00000514994.1_1_5:1057584-1063994:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7	ENST00000514994.1_1_5:1057584-1063994:-|nuORF	ENST00000514994.1_1_5:1057584-1063994:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.75848388671875	2	476.758549	951.502546	0.43743	0.00020855	-1.8565	-0.00088511	-1.4191	-0.00067656	476.7577688912986	100.79	1.7036	100.66	100.4	102.11	-0.12569					69	44	2	0	0	0	0.45795	1	12561	12561		62.107	21.329	1	198430			61478	3298	43217	43279	66679	66679					0.024854810348415413
QAPQLAIIWLI	11	Unmodified	_QAPQLAIIWLI_					0	0	0			REV__OR51S1|p.L63Q|1|0.2|ENSG00000176922|chr11:4849021-4849021|A/T|missense_variant	REV__OR51S1|p.L63Q|1|0.2|ENSG00000176922|chr11:4849021-4849021|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.59332275390625	3	422.592058	1264.75434	0.31209	0.00013189	1.4914	0.00063026	1.8035	0.00076215	422.59259397297745	49.759	3.148	49.654	48.913	52.061	-0.10558					256	83	5	0	0	0	1.0465	1	5004	5004		26.063	1.8316	1	11811000	+		61479	37318	43218	43280	66680	66680					0.13255699396381715
QAPRLAALAG	10	Unmodified	_QAPRLAALAG_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.28778076171875	2	484.287808	966.561064	-0.13867	-6.7156E-05	0.088138	4.2684E-05	-0.050531	-2.4472E-05	484.2878974932932	42.541	0.99665	42.408	41.856	42.852	-0.13318					69	28	5	0	0	0	0.96965	1	3899	3899		49.442	0.23076	1	4094100			61480	1020	43219	43281	66681	66681					0.07644582399984756
QAPRPLQGGP	10	Unmodified	_QAPRPLQGGP_					0	0	0		ENSG00000168334|ENST00000340369|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.750244140625	2	510.78289	1019.55123	-0.91843	-0.00046912	0.697	0.00035601	-0.22143	-0.0001131	510.7832330631456	25.161	0.70006	25.161	24.786	25.486	0					32	16	3	0	0	0	0.03519	1	1190	1190		21.96	4.5949	1	269120			61481	7812	43220	43282	66682	66682					0.04223394394614388
QAPSIPLIQN	10	Unmodified	_QAPSIPLIQN_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8047485351562	2	540.806031	1079.59751	-0.79145	-0.00042802	-2.5347	-0.0013708	-3.3262	-0.0017988	540.8043403628882	103.4	0.81673	103.4	103.08	103.9	0					25	19	2	0	0	0	0.83673	1	13275	13275		58.23	0.41864	1	150880			61482	11910	43221	43283	66683	66683					0.06089414506072899
QAPSIPLIQN	10	Unmodified	_QAPSIPLIQN_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.806031	1079.59751	-0.59749	-0.00032313	-2.0922	-0.0011315	-2.6897	-0.0014546	540.8043102153666	103.35	0.60842	103.35	103.1	103.7	0.0054245	-0.011808	0.00064768	NaN	58.23	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134450			61483	11910	43221	43283							0.06089414506072899
QAPSIPLIQN	10	Unmodified	_QAPSIPLIQN_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.806031	1079.59751	-0.51669	-0.00027943	-2.5908	-0.0014011	-3.1075	-0.0016805	540.8041855734655	103.44	0.54379	103.43	103.18	103.73	-0.0046082	0.066954	0.00010847	NaN	58.23	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149950			61484	11910	43221	43283							0.06089414506072899
QAPSIPLIQN	10	Unmodified	_QAPSIPLIQN_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.806031	1079.59751	-0.56575	-0.00030596	-6.9183	-0.0037414	-7.484	-0.0040474	541.303081203485	103.44	0.23309	103.27	103.12	103.35	-0.17034	-0.094862	-0.0045722	NaN	58.23	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33474			61485	11910	43221	43283							0.06089414506072899
QAPVALTD	8	Unmodified	_QAPVALTD_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;ENST00000397013.2_1_11:3752752-3765856:-|nuORF	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.7557373046875	2	407.718893	813.423233	-0.15507	-6.3226E-05	-1.5823	-0.00064515	-1.7374	-0.00070838	407.7190126144533	38.844	0.11295	38.618	38.523	38.636	-0.2257					4	2	2	0	0	0	0.027866	1	3217	3217		18.324	11.131	1	20889			61486	3057	43222	43284	66684	66684					0.009058340807087006
QAPVALTD	8	Unmodified	_QAPVALTD_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;ENST00000397013.2_1_11:3752752-3765856:-|nuORF	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	407.718893	813.423233	-0.07254	-2.9576E-05	1.4898	0.0006074	1.4172	0.00057783	407.71866246375635	39.203	0.32677	38.98	38.823	39.149	-0.22311	0.18111	0.0013502	NaN	3.41	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105140			61487	3057	43222	43284							0.009058340807087006
QAQCRIQA	8	Unmodified	_QAQCRIQA_					0	0	0		ENST00000409921.5_1_2:85629015-85637491:-|nuORF;ENST00000409724.5_1_2:85629015-85641113:-|nuORF	ENST00000409921.5_1_2:85629015-85637491:-|nuORF	ENST00000409921.5_1_2:85629015-85637491:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.23956298828125	2	459.234719	916.454884	-0.39223	-0.00018013	2.7055	0.0012425	2.3133	0.0010623	459.2349462849891	33.524	0.72071	33.53	33.08	33.801	0.0066261					31	19	3	0	0	0	0.027866	1	2431	2431		25.45	7.1258	1	217950			61488	13797	43223	43285	66685	66685					-0.0066849643698105865
QAQEDRLFA	9	Unmodified	_QAQEDRLFA_					0	0	0			REV__ENSG00000105447|ENST00000253237|GRWD1	REV__ENSG00000105447|ENST00000253237|GRWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.8014526367188	2	539.269813	1076.52507	0.83004	0.00044761	2.3449	0.0012645	3.1749	0.0017121	539.2708430427177	17.653	0.89144	17.499	17.259	18.15	-0.15403					21	17	2	0	0	0	0.024288	1	269	269		62.107	24.296	1	50963	+		61489	21527	43224	43286	66686	66686					-0.010129195675290248
QAQFVSSAPQ	10	Unmodified	_QAQFVSSAPQ_					0	0	0			REV__ENST00000508812.1_1_3:140993238-140993403:+|nuORF	REV__ENST00000508812.1_1_3:140993238-140993403:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2255249023438	2	531.764363	1061.51417	-1.171	-0.00062272	0.11947	6.3528E-05	-1.0516	-0.00055919	531.7646690458438	27.535	0.51327	27.367	27.057	27.57	-0.16816					18	11	2	0	0	0	0.03519	1	1521	1521		36.447	24.24	1	103100	+		61490	34072	43225	43287	66687	66687					-0.01412321941825212
QAQGLGQGLA	10	Unmodified	_QAQGLGQGLA_					0	0	0		tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	tr|Q8AZJ4|Q8AZJ4_EBVB9PutativeBARF0protein(Fragment)OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF0PE=4SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.77703857421875	2	471.753798	941.493044	-0.50898	-0.00024011	0.18658	8.8018E-05	-0.32241	-0.0001521	471.75399533085914	29.185	0.9677	29.036	28.7	29.668	-0.14952					29	22	2	0	0	0	0.03519	1	1717	1717		34.173	0	1	134390			61491	38103	43226	43288	66688	66688					0.01995712749339873
QAQIMLPRG	9	Unmodified	_QAQIMLPRG_					0	0	0		ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2829284667969	2	507.281669	1012.54878	0.067111	3.4044E-05	3.2448	0.001646	3.3119	0.0016801	507.28339323117126	18.508	1.1808	18.376	18.105	19.286	-0.13147					54	23	5	0	0	0	0.70186	1	301	301		45.952	8.7928	1	2784200			61492	13998	43227	43289	66689	66689					0.04301222665299065
QAQLCPVSL	9	Unmodified	_QAQLCPVSL_					0	0	0		ENST00000328933.9_1_22:39780264-39780798:+|nuORF	ENST00000328933.9_1_22:39780264-39780798:+|nuORF	ENST00000328933.9_1_22:39780264-39780798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2884521484375	2	479.754953	957.495352	-0.033802	-1.6217E-05	0.79163	0.00037979	0.75783	0.00036357	479.7549414067461	65.69	0.48958	65.727	65.523	66.013	0.037384					28	12	3	0	0	0	0.024427	1	7741	7741		42.396	15.6	1	731700			61493	12313	43228	43290	66690	66690					0.014904251627854137
QAQLGQLSYL	10	Unmodified	_QAQLGQLSYL_					0	0	0		nc|ENSG00000188747|Q86UR1-3|NOXA1;ENSG00000188747|ENST00000683555|NOXA1;nc|ENSG00000188747|Q86UR1-2|NOXA1	nc|ENSG00000188747|Q86UR1-3|NOXA1	nc|ENSG00000188747|Q86UR1-3|NOXA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2725219726562	2	560.803488	1119.59242	-0.27704	-0.00015537	-1.8115	-0.0010159	-2.0885	-0.0011712	560.8024470904837	93.122	0.42574	93.122	92.751	93.177	0					10	9	2	0	0	0	0.03519	1	11822	11822		42.396	11.892	1	76455			61494	9745	43229	43291	66691	66691					0.03741110643431966
QAQLQELTY	9	Unmodified	_QAQLQELTY_					0	0	0		nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3	nc|ENSG00000131773|O75525-2|KHDRBS3	nc|ENSG00000131773|O75525-2|KHDRBS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2784423828125	2	547.279846	1092.54514	-0.93218	-0.00051016	0.37539	0.00020544	-0.55678	-0.00030472	547.2801015750387	27.784	1.4983	27.616	27.23	28.728	-0.16816					125	35	7	0	0	0	0.12602	1	1584	1584		104.75	0.68976	1	7209600			61495	4548	43230	43292	66692	66692					0.002568313724395921
QAQLRNLEA	9	Unmodified	_QAQLRNLEA_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7474365234375	2	521.78563	1041.55671	0.74265	0.0003875	0.24989	0.00013039	0.99254	0.00051789	521.7867548063684	37.035	0.1985	36.826	36.685	36.883	-0.2092					5	4	2	0	0	0	0.024374	1	2928	2928		32.812	9.7699	1	27777			61496	4462	43231	43293	66693	66693					0.037590731864156623
QARAEGAL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))QARAEGAL_					1	0	0		ENSG00000101004|ENST00000278886|NINL;NINL|p.G1008W|1|0.58|ENSG00000101004|chr20:25476269-25476269|C/A|missense_variant	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	429.2273864746094	2	429.227417	856.44028	-0.68983	-0.0002961	1.2343	0.00052979	0.54446	0.0002337	429.2278020629799	26.974	0.97928	27.055	26.629	27.608	0.081293					48	25	4	0	0	0	0.46709	1	1388	1388		88.643	9.1918	1	1271800			61497	2275	43232	43294	66694	66694					0.006317546865034274
QARAGPLPP	9	Unmodified	_QARAGPLPP_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.2640075683594	2	453.761426	905.5083	-0.22024	-9.9938E-05	-0.17759	-8.0582E-05	-0.39783	-0.00018052	453.7611693763807	21.825	0.52743	21.634	21.42	21.947	-0.19072					22	10	3	0	0	0	0.024535	1	697	697		25.45	0	1	200900	+		61498	28124	43233	43295	66695	66695					0.051766243371730525
QARAKTQTP	9	Unmodified	_QARAKTQTP_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7638854980469	2	500.780348	999.546142	-0.2172	-0.00010877	-0.93053	-0.00046599	-1.1477	-0.00057476	500.78002032687	31.344	0.72925	31.413	30.997	31.726	0.06896					33	17	4	0	0	0	0.024511	1	2039	2039		32.812	7.3622	1	301810			61499	18102	43234	43296	66696	66696					0.046350905319854974
QARLKRDP	8	Unmodified	_QARLKRDP_					0	0	0		ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2631530761719	2	492.290882	982.567212	0.79085	0.00038933	1.962	0.00096587	2.7528	0.0013552	492.29177514423674	71.358	0.81461	71.069	70.761	71.575	-0.28858					57	20	4	0	0	0	0.027866	1	8605	8605		58.782	18.004	1	2699900			61500	6956	43235	43297	66697	66697					0.07523100631499346
QARLKVKR	8	Unmodified	_QARLKVKR_					0	0	0			REV__ENST00000314045.11_1_12:113595922-113596300:-|nuORF	REV__ENST00000314045.11_1_12:113595922-113596300:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8959655761719	2	499.832717	997.650882	0.12042	6.0192E-05	2.2873	0.0011432	2.4077	0.0012034	499.83361517379694	46.073	0.45619	46.073	45.852	46.308	0					17	12	2	0	0	0	0.027866	1	4553	4553		12.207	0.69583	1	97278	+		61501	30238	43236	43298	66698	66698					0.1519625679922001
QARLSESDY	9	Unmodified	_QARLSESDY_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.N2926Ifs*37|1|0.27|ENSG00000117724|chr1:214657221-214657221|A/-|frameshift_variant;CENPF|p.K2448Ifs*17|1|0.18|ENSG00000117724|chr1:214646873-214646874|-/AATCAAGCACTGCCATGGAGATGCTTCAAACACAATT|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.752197265625	2	534.751453	1067.48835	-0.94825	-0.00050708	1.2147	0.00064956	0.26645	0.00014248	534.7518640903688	40.057	0.69001	39.826	39.507	40.197	-0.23021					43	17	3	0	0	0	0.45795	1	3444	3444		62.107	3.3255	1	3347200			61502	3658	43237	43299	66699	66699					-0.042692161840932386
QARPQVKAM	9	Unmodified	_QARPQVKAM_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.791015625	2	514.787118	1027.55968	-0.82573	-0.00042507	1.6302	0.00083923	0.80452	0.00041416	515.2882740008204	21.872	0.56844	21.872	21.584	22.152	0					36	11	5	0	0	0	0.024323	1	701	701		44.117	13.613	1	216300	+		61503	27252	43238	43300	66700	66700					0.047006250395725147
QARPQVKAM	9	Unmodified	_QARPQVKAM_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.787118	1027.55968	-0.23709	-0.00012205	8.3091	0.0042774	8.072	0.0041554	514.7909793564716	21.842	0.43132	21.651	21.516	21.947	-0.19072	-0.047158	0.00075225	NaN	44.117	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43337	+		61504	27252	43238	43300							0.047006250395725147
QARPQVKAM	9	Unmodified	_QARPQVKAM_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.787118	1027.55968	-0.76555	-0.00039409	8.4075	0.0043281	7.642	0.003934	514.7912980270434	21.785	0.52966	21.572	21.41	21.94	-0.2128	-0.12607	0.00085361	NaN	44.117	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48909	+		61505	27252	43238	43300							0.047006250395725147
QARPRPQLP	9	Unmodified	_QARPRPQLP_					0	0	0		ENST00000501937.2_1_5:180258656-180261320:+|nuORF	ENST00000501937.2_1_5:180258656-180261320:+|nuORF	ENST00000501937.2_1_5:180258656-180261320:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7898559570312	2	531.811982	1061.60941	0.96981	0.00051575	1.9216	0.0010219	2.8914	0.0015377	531.8124613880727	63.936	0.46629	63.936	63.736	64.203	0					33	12	3	0	0	0	0.024412	1	7535	7535		17.365	5.1581	1	879330			61506	15656	43239	43301	66701	66701					0.08107076039891581
QARRLTAR	8	Unmodified	_QARRLTAR_					0	0	0			REV__GLS|p.S22R|1|0.24|ENSG00000115419|chr2:190881148-190881148|A/C|missense_variant	REV__GLS|p.S22R|1|0.24|ENSG00000115419|chr2:190881148-190881148|A/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2815246582031	2	486.296499	970.578445	-0.99897	-0.0004858	-3.1015	-0.0015083	-4.1005	-0.0019941	486.2952721470718	79.911	1.0038	79.933	79.729	80.733	0.021446					31	23	2	0	0	0	0.027866	1	9941	9941		38.806	1.647	1	243390	+		61507	36074	43240	43302	66702	66702					0.09197922725650187
QARRSRSI	8	Unmodified	_QARRSRSI_					0	0	0		nc|ENSG00000107937|Q9BZE4-3|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;ENSG00000107937|ENST00000360803|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2694396972656	2	487.286131	972.55771	-0.30343	-0.00014786	2.9022	0.0014142	2.5988	0.0012664	487.2874631241516	53.25	0.75351	53.25	52.901	53.655	0					33	20	2	0	0	0	0.027866	1	5812	5812		35.618	18.253	1	1857500			61508	2868	43241	43303	66703	66703					0.0703333234598631
QASIVKKR	8	Unmodified	_QASIVKKR_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.29864501953125	2	465.298176	928.581799	0.081851	3.8085E-05	0.051214	2.383E-05	0.13306	6.1915E-05	465.2980810429249	18.193	0.49543	17.99	17.767	18.262	-0.20371					20	9	3	0	0	0	1.0574	1	274	274		27.882	0	1	259160			61509	2053	43242	43304	66704	66704					0.11465172779651311
QASKVFLLLD	10	Unmodified	_QASKVFLLLD_					0	0	0			REV__ENST00000518319.5_1_8:94768050-94770751:+|nuORF	REV__ENST00000518319.5_1_8:94768050-94770751:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3307495117188	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0616	1	11376	11376		37.812	7.4938	1	14057000	+		61510	34230	43243	43305	66705	66705					0.0881915819995811
QASWMNFRN	9	Unmodified	_QASWMNFRN_					0	0	0		ENST00000367667.5_1_1:176050342-176050411:-|nuORF	ENST00000367667.5_1_1:176050342-176050411:-|nuORF	ENST00000367667.5_1_1:176050342-176050411:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.9737548828125	2	577.264007	1152.51346	0.27112	0.00015651	1.5933	0.00091976	1.8644	0.0010763	577.2648956983263	21.298	1.1557	21.121	20.484	21.64	-0.17721					40	23	2	0	0	0	0.024511	1	590	590		40.778	11.629	1	40503			61511	12874	43244	43306	66706	66706					-0.056694398625040776
QASWMNFRN	9	Unmodified	_QASWMNFRN_					0	0	0		ENST00000367667.5_1_1:176050342-176050411:-|nuORF	ENST00000367667.5_1_1:176050342-176050411:-|nuORF	ENST00000367667.5_1_1:176050342-176050411:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	577.264007	1152.51346	-1.3593	-0.00078465	3.7131	0.0021435	2.3539	0.0013588	577.2659343475118	21.395	1.8443	21.182	20.475	22.319	-0.2128	-0.031128	0.00093035	NaN	40.778	58	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59352			61512	12874	43244	43306							-0.056694398625040776
QATQERCGR	9	Unmodified	_QATQERCGR_					0	0	0			REV__chr13:20189603-20189951|185|74.75|0.54|7.11|-|2|GJB2,None|1	REV__chr13:20189603-20189951|185|74.75|0.54|7.11|-|2|GJB2,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3134155273438	2	524.751264	1047.48798	-1.0696	-0.00056127	0.26795	0.00014061	-0.80164	-0.00042066	524.7510471951034	73.31	0.22257	73.31	73.254	73.477	0					10	5	2	0	0	0	0.024477	1	8974	8974		14.865	0	1	238910	+		61513	19365	43245	43307	66707	66707					-0.03386914384918782
QATSACVKSH	10	Unmodified	_QATSACVKSH_					0	0	0			REV__ENSG00000050555|ENST00000361069|LAMC3	REV__ENSG00000050555|ENST00000361069|LAMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.7735595703125	2	516.250566	1030.48658	-0.86716	-0.00044767	1.3273	0.0006852	0.4601	0.00023753	516.2510625113867	24.824	0.88471	24.824	24.518	25.403	0					25	20	2	0	0	0	0.03519	1	1139	1139		46.457	18.575	1	118050	+		61514	20161	43246	43308	66708	66708					-0.02744548473674513
QATYLKPQS	9	Unmodified	_QATYLKPQS_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7039184570312	2	518.277106	1034.53966	-0.22199	-0.00011505	-1.0604	-0.00054959	-1.2824	-0.00066464	518.2768028596763	34.087	0.46151	33.863	33.68	34.142	-0.22412					18	11	2	0	0	0	0.024389	1	2525	2525		51.193	14.746	1	332030	+		61515	24260	43247	43309	66709	66709					0.023771525806068894
QAVDAAEALAL	11	Unmodified	_QAVDAAEALAL_					0	0	0		nc|ENSG00000099869|Q6U949|IGF2-AS	nc|ENSG00000099869|Q6U949|IGF2-AS	nc|ENSG00000099869|Q6U949|IGF2-AS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7732543945312	2	536.287671	1070.56079	-0.70996	-0.00038074	0.92143	0.00049415	0.21147	0.00011341	536.2874313197148	41.6	0.54134	41.372	41.121	41.662	-0.2278					16	10	2	0	0	0	0.024778	1	3701	3701		36.447	2.2742	1	112850			61516	18122	43248	43310	66710	66710					0.02833117889440473
QAVDLIRSL	9	Unmodified	_QAVDLIRSL_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7723388671875	2	507.800749	1013.58694	-0.62863	-0.00031922	1.3381	0.0006795	0.70949	0.00036028	507.80132946419957	51.841	0.4743	51.694	51.441	51.915	-0.14735					23	13	2	0	0	0	0.024427	1	5529	5529		34.173	6.2903	1	2265500	+		61517	22799	43249	43311	66711	66711					0.08069431851606623
QAVEHRKKA	9	Unmodified	_QAVEHRKKA_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.774169921875	2	533.809439	1065.60433	-0.32459	-0.00017327	1.3777	0.00073542	1.0531	0.00056215	533.8103878076562	47.233	0.52559	47.136	46.825	47.35	-0.096649					16	13	2	0	0	0	0.024487	1	4644	4644		17.365	0	1	96669			61518	8357	43250	43312	66712	66712					0.07414772177276063
QAVFLFLD	8	Unmodified	_QAVFLFLD_					0	0	0			REV__ENST00000416399.2_1_10:120403290-120403707:+|nuORF	REV__ENST00000416399.2_1_10:120403290-120403707:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.76251220703125	2	476.760561	951.506569	1.5106	0.00072018	2.08	0.00099166	3.5906	0.0017118	476.7614084089925	63.947	1.984	63.992	63.583	65.567	0.045502					151	54	5	0	0	0	0.68535	1	7459	7459		68.485	2.5872	1	21920000	+		61519	32077	43251	43313	66713	66713					0.028875705285713593
QAVKRAKP	8	Unmodified	_QAVKRAKP_					0	0	0		ENSG00000174885|ENST00000534750|NLRP6;nc|ENSG00000174885|P59044|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.26885986328125	2	449.285069	896.555585	-0.092277	-4.1458E-05	-0.19655	-8.8308E-05	-0.28883	-0.00012977	449.2847722421496	52.226	0.45811	52.042	51.815	52.273	-0.18404					19	11	2	0	0	0	0.027866	1	5389	5389		30.504	12.179	1	163680			61520	8505	43252	43314	66714	66714					0.10316903608179473
QAVKSTVQT	9	Unmodified	_QAVKSTVQT_					0	0	0		nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-2|LIN54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.9546813964844	2	481.269281	960.52401	0.691	0.00033256	0.47697	0.00022955	1.168	0.00056211	481.26956708446835	19.495	0.54645	19.295	19.106	19.653	-0.2001					19	10	3	0	0	0	0.024374	1	463	463		40.778	0	1	91496			61521	18615	43253	43315	66715	66715					0.04216866063575253
QAVRQTLST	9	Unmodified	_QAVRQTLST_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.292236328125	2	502.28018	1002.54581	-0.5729	-0.00028775	-3.7397	-0.0018784	-4.3126	-0.0021661	502.2799092895147	57.335	0.21177	57.104	56.955	57.167	-0.2309					7	5	2	0	0	0	0.024205	1	6249	6249		35.618	4.0885	1	258140			61522	4934	43254	43316	66716	66716					0.04463670812140208
QAVYHSSRK	9	Unmodified	_QAVYHSSRK_					0	0	0			REV__chr2:177222632-177231889|108|18.44|0.0|20.81|-|2|NFE2L2,NFE2L2|1	REV__chr2:177222632-177231889|108|18.44|0.0|20.81|-|2|NFE2L2,NFE2L2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2874755859375	2	538.285797	1074.55704	-1.1137	-0.0005995	3.757	0.0020223	2.6433	0.0014228	538.2876027398833	21.49	1.7317	21.562	21.057	22.789	0.071487					87	35	3	0	0	0	0.89441	1	620	620		32.812	1.2826	1	351860	+		61523	19412	43255	43317	66717	66717					0.022744929062810115
QCCEQQHVEA	10	Unmodified	_QCCEQQHVEA_					0	0	0			REV__ENST00000523019.1_1_8:30778611-30778848:+|nuORF	REV__ENST00000523019.1_1_8:30778611-30778848:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.2899169921875	2	587.734422	1173.45429	0.025354	1.4901E-05	0.28972	0.00017028	0.31507	0.00018518	587.7340920211717	85.028	0.74905	84.825	84.544	85.293	-0.20329					38	17	4	0	0	0	0.03519	1	10331	10331		19.104	9.9206	1	169380	+		61524	34347	43256	43318	66718	66718					-0.1254970393899839
QCCIDCRTGL	10	2 Carbamidomethyl (C)	_QC(Carbamidomethyl (C))C(Carbamidomethyl (C))IDCRTGL_	QC(0.978)C(0.998)IDC(0.024)RTGL		QC(16)C(27)IDC(-16)RTGL		0	2	0			REV__SRPX|p.R88C|1|0.33|ENSG00000101955|chrX:38174247-38174247|G/A|missense_variant	REV__SRPX|p.R88C|1|0.33|ENSG00000101955|chrX:38174247-38174247|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	613.2577514648438	2	613.25975	1224.50495	0.53657	0.00032905	-4.1699	-0.0025572	-3.6333	-0.0022282	613.2570546748976	58.753	1.0943	58.566	58.275	59.37	-0.18705					64	29	3	0	0	0	0.91678	1	6638	6638		52.937	6.9645	3	2408600	+		61525	37581	43257	43319	66719	66719	483;484				-0.09832497885645353
QCCIDCRTGL	10	2 Carbamidomethyl (C)	_QC(Carbamidomethyl (C))C(Carbamidomethyl (C))IDCRTGL_					0	2	0			REV__SRPX|p.R88C|1|0.33|ENSG00000101955|chrX:38174247-38174247|G/A|missense_variant	REV__SRPX|p.R88C|1|0.33|ENSG00000101955|chrX:38174247-38174247|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	613.25975	1224.50495	-0.27312	-0.00016749	-3.5177	-0.0021573	-3.7908	-0.0023248	613.2575074406969	58.485	1.1424	58.485	58.228	59.37	0	-0.028314	0.00010157	NaN	52.937	77	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2518400	+		61526	37581	43257	43319			483;484				-0.09832497885645353
QCCIDCRTGL	10	2 Carbamidomethyl (C)	_QC(Carbamidomethyl (C))C(Carbamidomethyl (C))IDCRTGL_					0	2	0			REV__SRPX|p.R88C|1|0.33|ENSG00000101955|chrX:38174247-38174247|G/A|missense_variant	REV__SRPX|p.R88C|1|0.33|ENSG00000101955|chrX:38174247-38174247|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	613.25975	1224.50495	0.53657	0.00032905	-4.1699	-0.0025572	-3.6333	-0.0022282	613.2570546748976	58.753	1.0943	58.566	58.275	59.37	-0.18705	0.051868	-0.00069834	NaN	52.937	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2408600	+		61527	37581	43257	43319			483;484				-0.09832497885645353
QCCPSSGMQSY	11	Oxidation (M)	_QCCPSSGM(Oxidation (M))QSY_		QCCPSSGM(1)QSY		QCCPSSGM(56)QSY	0	0	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.81146240234375	3	402.81232	1205.41513	-0.83281	-0.00033547	-2.4604	-0.00099108	-3.2932	-0.0013265	402.81154233650335	28.801	1.1578	28.555	28.241	29.399	-0.24524					82	26	6	0	0	0	0.83252	2	1720	1696;1720		55.721	26.17	1	6710000	+		61528	32605	43258	43320	66720;66721	66721		895			-0.17936172284885288
QCCPSSGMQSY	11	Oxidation (M)	_QCCPSSGM(Oxidation (M))QSY_		QCCPSSGM(1)QSY		QCCPSSGM(71)QSY	0	0	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	603.7132568359375	2	603.714841	1205.41513	-1.9141	-0.0011555	-1.1982	-0.00072336	-3.1122	-0.0018789	603.7141706263516	28.801	0.85806	28.556	28.241	29.099	-0.24524					63	19	5	0	0	0	0.58492	3	1722	1700;1709;1722		70.816	12.25	1	2635000	+		61529	32605	43258	43320	66722;66723;66724	66724		895			-0.17936172284885288
QCCPSSGMQSY	11	Oxidation (M)	_QCCPSSGM(Oxidation (M))QSY_		QCCPSSGM(1)QSY		QCCPSSGM(71)QSY	0	0	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	603.713134765625	2	603.714841	1205.41513	-0.93451	-0.00056418	-2.1077	-0.0012724	-3.0422	-0.0018366	603.7136052904972	28.658	0.98812	28.489	28.171	29.16	-0.16897					68	22	6	0	0	0	0.58492	2	1684	1675;1684		70.816	13.732	1	2253700	+		61530	32605	43258	43320	66725;66726	66726		895			-0.17936172284885288
QCCPSSGMQSY	11	Oxidation (M)	_QCCPSSGM(Oxidation (M))QSY_		QCCPSSGM(1)QSY		QCCPSSGM(49)QSY	0	0	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.8112487792969	3	402.81232	1205.41513	0.42514	0.00017125	-3.7704	-0.0015188	-3.3453	-0.0013475	402.81103505818817	28.657	1.1568	28.488	28.131	29.288	-0.16897					89	26	6	0	0	0	0.93575	3	1701	1677;1689;1701		49.466	17.432	1	6273000	+		61531	32605	43258	43320	66727;66728;66729	66729		895			-0.17936172284885288
QCCPSSGMQSY	11	Oxidation (M)	_QCCPSSGM(Oxidation (M))QSY_		QCCPSSGM(1)QSY		QCCPSSGM(45)QSY	0	0	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.81134033203125	3	402.81232	1205.41513	-0.79535	-0.00032038	-2.0253	-0.0008158	-2.8206	-0.0011362	402.8115453563183	28.491	1.129	28.339	28.04	29.169	-0.15195					78	26	5	0	0	0	0.96481	4	1633	1633;1643;1654;1666		44.639	17.592	1	6811400	+		61532	32605	43258	43320	66730;66731;66732;66733	66730		895			-0.17936172284885288
QCCPSSGMQSY	11	Oxidation (M)	_QCCPSSGM(Oxidation (M))QSY_		QCCPSSGM(1)QSY		QCCPSSGM(80)QSY	0	0	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.7133178710938	2	603.714841	1205.41513	-0.70242	-0.00042406	-2.2808	-0.0013769	-2.9832	-0.001801	603.7134900701277	28.491	0.96088	28.339	28.08	29.041	-0.15195					61	22	5	0	0	0	0.43676	2	1648	1648;1660		80.455	21.673	1	3320200	+		61533	32605	43258	43320	66734;66735	66734		895			-0.17936172284885288
QCCPSSGMQSY	11	Oxidation (M)	_QCCPSSGM(Oxidation (M))QSY_					0	0	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	402.81232	1205.41513	-0.79535	-0.00032038	-2.0253	-0.0008158	-2.8206	-0.0011362	402.8115453563183	28.491	1.129	28.339	28.04	29.169	-0.15195	-0.12199	0.00027183	NaN	55.721	78	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6811400	+		61534	32605	43258	43320				895			-0.17936172284885288
QCCPSSGMQSY	11	Carbamidomethyl (C),Oxidation (M)	_QC(Carbamidomethyl (C))CPSSGM(Oxidation (M))QSY_	QC(0.57)C(0.43)PSSGMQSY	QCCPSSGM(1)QSY	QC(1.2)C(-1.2)PSSGMQSY	QCCPSSGM(45)QSY	0	1	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.81842041015625	3	421.819474	1262.43659	-0.054321	-2.2914E-05	-2.5058	-0.001057	-2.5601	-0.0010799	421.8182883424761	28.012	0.67318	27.86	27.61	28.283	-0.15195					46	16	4	0	0	0	0.96481	1	1578	1578		44.639	21.262	2	1192900	+		61535	32605	43258	43321	66736	66736	430	895			-0.18412787256147567
QCCPSSGMQSY	11	Carbamidomethyl (C),Oxidation (M)	_QC(Carbamidomethyl (C))CPSSGM(Oxidation (M))QSY_					0	1	1			REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	REV__ENST00000445076.1_1_1:93804740-93811327:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	421.819474	1262.43659	-0.054321	-2.2914E-05	-2.5058	-0.001057	-2.5601	-0.0010799	421.8182883424761	28.012	0.67318	27.86	27.61	28.283	-0.15195	-0.047256	-0.00066921	NaN	44.639	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1192900	+		61536	32605	43258	43321			430	895			-0.18412787256147567
QCESYPYEST	10	Unmodified	_QCESYPYEST_					0	0	0			REV__nc|ENSG00000126562|Q96J92-2|WNK4;REV__ENSG00000165238|ENST00000427277|WNK2;REV__nc|ENSG00000196632|Q9BYP7-3|WNK3;REV__nc|ENSG00000060237|Q9H4A3-2|WNK1	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	401.871337890625	3	402.825499	1205.45467	0.2095	8.4391E-05	-2.2608	-0.00091069	-2.0513	-0.0008263	402.82441058982715	30.993	0.50503	31.005	30.709	31.214	0.011797					18	11	2	0	0	0	0.03519	1	2002	2002		10.587	6.7434	1	74550	+		61537	28207;25862;22903;20250	43259	43322	66737	66737					-0.1398400573816616
QCFEIQKS	8	Unmodified	_QCFEIQKS_					0	0	0		ENST00000316024.9_2_17:7590303-7590417:+|nuORF	ENST00000316024.9_2_17:7590303-7590417:+|nuORF	ENST00000316024.9_2_17:7590303-7590417:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.79803466796875	2	491.73676	981.458967	1.0627	0.00052259	0.57677	0.00028362	1.6395	0.00080621	491.7375006424828	19.864	0.19642	19.664	19.505	19.701	-0.2001					6	3	2	0	0	0	0.027866	1	454	454		34.173	0	1	11143			61538	12143	43260	43323	66738	66738					-0.032504517339248196
QCHSPVCCT	9	Unmodified	_QCHSPVCCT_					0	0	0			REV__ENSG00000212658|ENST00000391353|KRTAP29-1	REV__ENSG00000212658|ENST00000391353|KRTAP29-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.80242919921875	2	489.185523	976.356492	2.1827	0.0010677	-2.6909	-0.0013164	-0.50828	-0.00024864	489.184046710607	24.713	0.78422	24.532	24.114	24.898	-0.18089					21	17	2	0	0	0	0.023181	1	1126	1126		51.335	3.6781	1	46779	+		61539	28719	43261	43324	66739	66739					-0.13263184068694045
QCINLFLDLY	10	Unmodified	_QCINLFLDLY_					0	0	0			REV__CNKSR2|p.D999N|1|0.67|ENSG00000149970|chrX:21652411-21652411|G/A|missense_variant	REV__CNKSR2|p.D999N|1|0.67|ENSG00000149970|chrX:21652411-21652411|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3136596679688	2	621.315374	1240.6162	-1.4993	-0.00093152	-1.5442	-0.00095941	-3.0434	-0.0018909	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.52982	1	7648	7648		84.916	2.675	1	29556000	+		61540	19505	43262	43325	66740	66740					0.005512080855851309
QCINLFLDLY	10	Unmodified	_QCINLFLDLY_					0	0	0			REV__CNKSR2|p.D999N|1|0.67|ENSG00000149970|chrX:21652411-21652411|G/A|missense_variant	REV__CNKSR2|p.D999N|1|0.67|ENSG00000149970|chrX:21652411-21652411|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3128051757812	2	621.315374	1240.6162	-0.33526	-0.0002083	-2.6485	-0.0016456	-2.9838	-0.0018539	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.62431	1	7653	7653		74.255	10.048	1	26099000	+		61541	19505	43262	43325	66741	66741					0.005512080855851309
QCKELVNLI	9	Unmodified	_QCKELVNLI_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.7588500976562	2	530.296985	1058.57942	0.7799	0.00041358	1.5815	0.00083865	2.3614	0.0012522	530.8009093838684	97.267	1.0657	97.267	96.749	97.815	-3.8147E-05					32	23	2	0	0	0	0.024367	1	12275	12275		44.377	1.5129	1	98288			61542	9461	43263	43326	66742	66742					0.05246956259702529
QCKELVNLI	9	Unmodified	_QCKELVNLI_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.296985	1058.57942	-0.18969	-0.00010059	-2.7849	-0.0014768	-2.9745	-0.0015774	530.2964715207935	97.376	0.71717	97.215	96.684	97.401	-0.16106	-0.025969	-0.0016995	NaN	44.377	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51854			61543	9461	43263	43326							0.05246956259702529
QCKGPVDIN	9	Unmodified	_QCKGPVDIN_					0	0	0		nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-2|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	nc|ENSG00000184347|O75094-3|SLIT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.3088073730469	2	487.242209	972.469866	1.2068	0.00058801	-1.1506	-0.00056061	0.056226	2.7395E-05	487.24139952083686	20.025	0.68174	20.091	19.829	20.511	0.066195					21	13	2	0	0	0	0.024319	1	488	488		66.429	18.772	1	16966			61544	9328	43264	43327	66743	66743					-0.017470493596533743
QCLCPPGFVL	10	Unmodified	_QCLCPPGFVL_					0	0	0		ENSG00000142449|ENST00000600128|FBN3;ENSG00000138829|ENST00000262464|FBN2	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3294677734375	2	538.767006	1075.51946	-1.3899	-0.00074884	4.318	0.0023264	2.9281	0.0015776	538.7717085802217	81.647	0.21371	81.504	81.399	81.613	-0.14249					6	4	2	0	0	0	0.03519	1	9819	9819		23.042	0	1	17984			61545	5560	43265	43328	66744	66744					-0.015280576752047637
QCLGSLSLEE	10	Unmodified	_QCLGSLSLEE_					0	0	0			REV__nc|ENSG00000139546|Q15633-2|TARBP2	REV__nc|ENSG00000139546|Q15633-2|TARBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.816162109375	2	539.757889	1077.50123	-0.1826	-9.8562E-05	-4.3999	-0.0023749	-4.5825	-0.0024734	539.7570652963846	37.121	0.25978	37.057	36.904	37.163	-0.063389					10	6	2	0	0	0	0.03519	1	2983	2983		110.12	35.603	1	60569	+		61546	23946	43266	43329	66745	66745					-0.034425211161988045
QCLLFPVL	8	Unmodified	_QCLLFPVL_					0	0	0			REV__ENSG00000038002|ENST00000264595|AGA	REV__ENSG00000038002|ENST00000264595|AGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7318420410156	2	466.767332	931.52011	-0.56503	-0.00026374	-3.2059	-0.0014964	-3.7709	-0.0017601	466.7654897628005	60.428	0.36425	60.252	59.998	60.362	-0.1761					13	8	2	0	0	0	0.027866	1	6710	6710		20.482	0	1	89747	+		61547	20073	43267	43330	66746	66746					0.051611050361543676
QCLPNLVAR	9	Unmodified	_QCLPNLVAR_					0	0	0			REV__ENSG00000100934|ENST00000307712|SEC23A	REV__ENSG00000100934|ENST00000307712|SEC23A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.31231689453125	2	507.281669	1012.54878	-1.2345	-0.00062623	1.4012	0.00071082	0.16674	8.4584E-05	507.7849114510683	65.147	0.60839	64.944	64.577	65.186	-0.20254					21	14	2	0	0	0	0.02435	1	7391	7391		34.173	5.023	1	98972	+		61548	21165	43268	43331	66747	66747					0.04301222665287696
QCLPNLVAR	9	Unmodified	_QCLPNLVAR_					0	0	0			REV__ENSG00000100934|ENST00000307712|SEC23A	REV__ENSG00000100934|ENST00000307712|SEC23A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.281669	1012.54878	-0.86937	-0.00044102	7.5382	0.003824	6.6689	0.003383	507.2853999347004	64.674	0.91329	64.674	64.347	65.26	0	-0.11643	0.00042329	NaN	26.693	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1849300	+		61549	21165	43268	43331							0.04301222665287696
QCLPNLVAR	9	Unmodified	_QCLPNLVAR_					0	0	0			REV__ENSG00000100934|ENST00000307712|SEC23A	REV__ENSG00000100934|ENST00000307712|SEC23A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.281669	1012.54878	-1.4403	-0.00073063	7.6624	0.003887	6.2221	0.0031563	507.285576548899	64.967	0.85986	64.704	64.379	65.239	-0.2626	-0.085553	0.00054921	NaN	26.693	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1693800	+		61550	21165	43268	43331							0.04301222665287696
QCLPNLVAR	9	Unmodified	_QCLPNLVAR_					0	0	0			REV__ENSG00000100934|ENST00000307712|SEC23A	REV__ENSG00000100934|ENST00000307712|SEC23A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.281669	1012.54878	-0.51916	-0.00026336	7.0272	0.0035647	6.508	0.0033014	507.28528042640113	64.652	0.95696	64.697	64.372	65.329	0.045502	-0.09274	-9.5246E-05	NaN	26.693	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1801100	+		61551	21165	43268	43331							0.04301222665287696
QCNVMLILSRE	11	Unmodified	_QCNVMLILSRE_					0	0	0			REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.8910217285156	3	435.893302	1304.65808	-1.1567	-0.00050422	-4.1119	-0.0017923	-5.2686	-0.0022966	435.89148158058674	65.16	1.187	64.957	64.617	65.804	-0.20254					86	28	4	0	0	0	0.30495	1	7433	7433		89.029	5.3818	1	5731800	+		61552	34076	43269	43332	66748	66748					0.017934405024561784
QCNYFFYI	8	Unmodified	_QCNYFFYI_					0	0	0			REV__ENST00000373864.5_1_1:28339722-28384581:-|nuORF	REV__ENST00000373864.5_1_1:28339722-28384581:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.26904296875	2	549.241678	1096.4688	-0.91377	-0.00050188	1.5071	0.00082778	0.59336	0.0003259	549.241988712532	55.945	0.36103	55.789	55.572	55.933	-0.15656					12	9	2	0	0	0	0.027866	1	6026	6026		18.324	0	1	121770	+		61553	31275	43270	43333	66749	66749					-0.07557263728563157
QCPSPGKRPLR	11	Unmodified	_QCPSPGKRPLR_					0	0	0			REV__ENST00000535434.5_1_12:6977354-6977408:+|nuORF	REV__ENST00000535434.5_1_12:6977354-6977408:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.26898193359375	3	413.564396	1237.67136	0.073685	3.0473E-05	1.2778	0.00052846	1.3515	0.00055893	413.5645680172881	27.995	1.712	27.995	27.361	29.073	0					74	42	3	0	0	0	0.024762	1	1655	1655		26.75	7.6462	1	589140	+		61554	34672	43271	43334	66750	66750					0.06203059396716526
QCQPVQPKKE	10	Unmodified	_QCQPVQPKKE_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;CCNB3|p.T485Hfs*37|1|0.3|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant;CCNB3|p.K727Nfs*5|1|0.06|ENSG00000147082|chrX:50310350-50310350|G/-|frameshift_variant;nc|ENSG00000147082|Q8WWL7-3|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	592.8043212890625	2	592.808248	1183.60194	-1.7661	-0.001047	-4.2282	-0.0025065	-5.9943	-0.0035535	592.8055486236404	26.062	1.6654	26.062	25.285	26.951	0					101	39	5	0	0	0	0.91678	1	1284	1284		52.937	4.9772	1	2309700			61555	5929	43272	43335	66751	66751					0.017485556573092254
QCRVRCPIGVS	11	Unmodified	_QCRVRCPIGVS_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|224|1|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|224|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.5679626464844	3	406.546237	1216.61688	1.4779	0.00060084	1.3484	0.00054817	2.8263	0.001149	406.54662547032956	42.1	0.71159	42.126	41.893	42.605	0.026012					38	20	3	0	0	0	0.024739	1	3829	3829		42.338	19.758	1	384180	+		61556	19332	43273	43336	66752	66752					0.01723724253633918
QCSLAKLLHLL	11	Unmodified	_QCSLAKLLHLL_					0	0	0			REV__ENSG00000135093|ENST00000257548|USP30	REV__ENSG00000135093|ENST00000257548|USP30	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8690795898438	2	619.868108	1237.72166	-0.66004	-0.00040914	2.7871	0.0017276	2.1271	0.0013185	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	0.99553	1	11541	11541		37.812	6.2817	1	5229800	+		61557	23510	43274	43337	66753	66753					0.11231169001894159
QCSVEPDLISK	11	Unmodified	_QCSVEPDLISK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.8999938964844	3	406.872673	1217.59619	0.44646	0.00018165	2.5111	0.0010217	2.9576	0.0012034	407.20719308110563	24.13	0.26554	23.915	23.733	23.999	-0.2151					7	5	2	0	0	0	0.024753	1	1003	1003		9.3626	0	1	16027			61558	7333	43275	43338	66754	66754					-0.0039058764502897247
QCSYCCCC	8	Unmodified	_QCSYCCCC_					0	0	0			REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF	REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7663269042969	2	456.612487	911.210422	-0.35494	-0.00016207	1.4527	0.0006633	1.0977	0.00050123	456.6129093671939	23.016	0.22259	23.09	22.931	23.154	0.073954					9	4	3	0	0	0	0.027866	1	826	826		0	0	1	16938	+		61559	31229	43276	43339	66755	66755					-0.24873525900613913
QDAALLAYLP	10	Unmodified	_QDAALLAYLP_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.281982421875	2	537.795132	1073.57571	-1.2252	-0.00065888	0.87631	0.00047127	-0.34884	-0.00018761	537.7957464926511	65.095	0.48108	64.839	64.582	65.063	-0.25563					23	11	3	0	0	0	0.03519	1	7426	7426		42.396	1.618	1	692140	+		61560	21417	43277	43340	66756	66756					0.04186609757448423
QDACQAQAR	9	Unmodified	_QDACQAQAR_					0	0	0		ENSG00000179071|ENST00000316398|CCDC89	ENSG00000179071|ENST00000316398|CCDC89	ENSG00000179071|ENST00000316398|CCDC89	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7509460449219	2	495.724715	989.434877	-0.33784	-0.00016748	-3.3016	-0.0016367	-3.6394	-0.0018042	495.7233497951731	45.629	0.13615	45.533	45.461	45.597	-0.096649					5	3	2	0	0	0	0.024447	1	4333	4333		40.778	3.6191	1	137520			61561	8868	43278	43341	66757	66757					-0.06026292167609881
QDADDQKRK	9	Unmodified	_QDADDQKRK_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.8036499023438	2	552.275626	1102.5367	-0.6992	-0.00038615	4.3098	0.0023802	3.6106	0.001994	552.2778854352174	57.339	0.85973	57.172	56.786	57.646	-0.1672					43	22	3	0	0	0	0.02438	1	6296	6296		63.534	34.364	1	1287400	+		61562	23588	43279	43342	66758	66758					-0.010467225442198469
QDAELNSPQLE	11	Unmodified	_QDAELNSPQLE_					0	0	0			REV__ENSG00000151929|ENST00000369085|BAG3	REV__ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.1986999511719	3	415.198213	1242.57281	-0.041735	-1.7328E-05	0.67304	0.00027945	0.63131	0.00026212	415.19870332764424	20.544	1.025	20.376	20.098	21.123	-0.16774					60	20	5	0	0	0	0.95664	1	551	551		48.188	4.5372	1	1480300	+		61563	24806	43280	43343	66759	66759					-0.038773101580318325
QDAEPVKRA	9	Unmodified	_QDAEPVKRA_					0	0	0		ENST00000555241.5_2_14:64663518-64663803:+|nuORF	ENST00000555241.5_2_14:64663518-64663803:+|nuORF	ENST00000555241.5_2_14:64663518-64663803:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.27105712890625	2	507.272355	1012.53016	-0.36472	-0.00018501	-0.26055	-0.00013217	-0.62527	-0.00031718	507.2723280912913	30.85	0.94657	30.924	30.586	31.532	0.074314					64	22	4	0	0	0	0.53979	1	1962	1962		56.721	1.9447	1	2626100			61564	16678	43281	43344	66760	66760					0.024393842950871658
QDAGIGFILV	10	Unmodified	_QDAGIGFILV_					0	0	0		nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L;ENST00000494043.1_1_13:113699020-113708621:+|nuORF;ENST00000480321.1_1_13:113699393-113699726:+|nuORF	nc|ENSG00000126217|O15068-4|MCF2L;ENST00000480321.1_1_13:113699393-113699726:+|nuORF	ENST00000480321.1_1_13:113699393-113699726:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.274658203125	2	516.78985	1031.56515	-0.49075	-0.00025361	-3.8672	-0.0019985	-4.358	-0.0022522	516.7877524863968	45.63	0.50791	45.63	45.445	45.953	0					23	14	2	0	0	0	0.03519	1	4430	4430		23.042	3.939	1	1249300			61565	15194;4183	43282	43345	66761	66761					0.05062627103052364
QDAKEEANKAM	11	Unmodified	_QDAKEEANKAM_					0	0	0		ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5632629394531	3	412.195927	1233.56595	0.1457	6.0058E-05	-1.9635	-0.00080935	-1.8178	-0.00074929	412.19491019982235	31.991	0.80987	31.754	31.529	32.339	-0.23666					36	18	4	0	0	0	0.024723	1	2242	2242		31.068	5.0048	1	326180			61566	2045	43283	43346	66762	66762					-0.04148946310215251
QDALNPEDEV	10	Unmodified	_QDALNPEDEV_					0	0	0		ENST00000552090.1_1_12:49167835-49170266:-|nuORF;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	ENST00000552090.1_1_12:49167835-49170266:-|nuORF	ENST00000552090.1_1_12:49167835-49170266:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.805908203125	2	565.254025	1128.4935	-1.3359	-0.00075513	-3.9559	-0.0022361	-5.2918	-0.0029912	565.2515155678706	56.028	0.35587	56.126	55.965	56.321	0.097897					15	9	3	0	0	0	0.03519	1	6173	6173		36.447	10.873	1	61780			61567	8455	43284	43347	66763	66763					-0.065609571121513
QDALRRLL	8	Unmodified	_QDALRRLL_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.772216796875	2	492.801083	983.587613	-0.47533	-0.00023424	-0.061954	-3.0531E-05	-0.53728	-0.00026477	492.80084705440635	32.979	0.60598	32.979	32.715	33.321	0					32	15	3	0	0	0	0.027866	1	2349	2349		31.955	0	1	445890			61568	6803	43285	43348	66764	66764					0.09516271291306566
QDARDQNELL	10	Unmodified	_QDARDQNELL_					0	0	0		ENST00000477275.1_1_10:133959024-133981894:+|nuORF;nc|ENSG00000176049|Q96AA8-4|JAKMIP2;nc|ENSG00000176049|Q96AA8-2|JAKMIP2;nc|ENSG00000176049|Q96AA8|JAKMIP2;ENSG00000176049|ENST00000616793|JAKMIP2;nc|ENSG00000188385|Q5VZ66|JAKMIP3;ENSG00000188385|ENST00000684848|JAKMIP3	ENST00000477275.1_1_10:133959024-133981894:+|nuORF	ENST00000477275.1_1_10:133959024-133981894:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.53851318359375	3	401.198436	1200.57348	0.9189	0.00036866	-3.0375	-0.0012186	-2.1186	-0.00084998	401.19711619606727	25.558	0.57573	25.387	25.122	25.698	-0.17078					38	13	4	0	0	0	0.03519	1	1211	1211		42.338	2.2799	1	952950			61569	8607	43286	43349	66765	66765					-0.018784707182931015
QDAYKVAVTYP	11	Unmodified	_QDAYKVAVTYP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	418.8849792480469	3	418.883677	1253.6292	-0.64574	-0.00027049	3.0883	0.0012936	2.4425	0.0010231	418.8849033391189	37.083	1.0964	36.864	36.447	37.544	-0.2195					77	27	5	0	0	0	0.93575	1	2952	2952		49.466	10.712	1	2817100	+		61570	22996	43287	43350	66766	66766					0.012533624693332968
QDAYKVAVTYP	11	Unmodified	_QDAYKVAVTYP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	418.883677	1253.6292	1.5353	0.00064312	1.1267	0.00047198	2.6621	0.0011151	418.88413383496913	37.077	0.71765	37.077	36.805	37.523	0	0.14015	-0.0014518	NaN	49.466	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518270	+		61571	22996	43287	43350							0.012533624693332968
QDAYKVAVTYP	11	Unmodified	_QDAYKVAVTYP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	418.883677	1253.6292	0.25566	0.00010709	2.4143	0.0010113	2.6699	0.0011184	418.8847017134607	36.891	0.69051	36.827	36.508	37.198	-0.063389	-0.11016	0.00016619	NaN	49.466	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401710	+		61572	22996	43287	43350							0.012533624693332968
QDAYKVAVTYP	11	Unmodified	_QDAYKVAVTYP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	418.883677	1253.6292	0.057632	2.4141E-05	2.8495	0.0011936	2.9072	0.0012178	418.884817166702	37.056	1.1086	37.088	36.643	37.751	0.032272	0.15059	0.00071315	NaN	49.466	67	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361490	+		61573	22996	43287	43350							0.012533624693332968
QDAYKVAVTYP	11	Unmodified	_QDAYKVAVTYP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	418.883677	1253.6292	0.25606	0.00010726	2.3448	0.00098221	2.6009	0.0010895	418.88459005788224	37.14	0.92496	36.947	36.618	37.543	-0.193	0.009942	7.8921E-05	NaN	49.466	71	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3123800	+		61574	22996	43287	43350							0.012533624693332968
QDAYKVAVTYP	11	Unmodified	_QDAYKVAVTYP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	418.883677	1253.6292	-0.64574	-0.00027049	3.0883	0.0012936	2.4425	0.0010231	418.8849033391189	37.083	1.0964	36.864	36.447	37.544	-0.2195	-0.073641	0.0010132	NaN	49.466	77	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2817100	+		61575	22996	43287	43350							0.012533624693332968
QDAYKVAVTYP	11	Unmodified	_QDAYKVAVTYP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	418.883677	1253.6292	0.82346	0.00034493	1.6657	0.00069772	2.4891	0.0010427	418.88431196706347	37.03	1.2083	36.82	36.445	37.653	-0.2092	-0.11687	-0.00077453	NaN	49.466	86	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2461100	+		61576	22996	43287	43350							0.012533624693332968
QDCIKPKQA	9	Unmodified	_QDCIKPKQA_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7091674804688	2	515.771134	1029.52771	-0.75245	-0.00038809	-3.2736	-0.0016884	-4.0261	-0.0020765	515.7693726928121	30.151	0.5431	29.973	29.74	30.283	-0.17818					24	12	3	0	0	0	0.024456	1	1893	1893		35.152	6.0025	1	236590			61577	18419	43288	43351	66767	66767					0.014132125657624783
QDCLLRNW	8	Unmodified	_QDCLLRNW_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2913818359375	2	524.255651	1046.49675	0.55292	0.00028987	3.0319	0.0015895	3.5849	0.0018794	524.2570013915522	19.115	0.39487	19.115	18.873	19.268	0					12	7	3	0	0	0	0.027866	1	367	367		29.15	14.285	1	22843			61578	8694	43289	43352	66768	66768					-0.024639407484755793
QDDELNFGW	9	Unmodified	_QDDELNFGW_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.8062744140625	2	562.238178	1122.4618	-0.63094	-0.00035474	-1.9118	-0.0010749	-2.5428	-0.0014296	562.2369413448407	34.796	0.24166	34.609	34.479	34.721	-0.18675					8	5	2	0	0	0	0.024456	1	2568	2568		51.193	17.677	1	67661			61579	1169	43290	43353	66769	66769					-0.09452905075409035
QDDELNFGW	9	Unmodified	_QDDELNFGW_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	562.238178	1122.4618	-0.10945	-6.1537E-05	-2.8948	-0.0016276	-3.0043	-0.0016891	562.2364176418241	34.825	0.32569	34.61	34.508	34.833	-0.21555	0.00012706	-0.00074184	NaN	51.193	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101340			61580	1169	43290	43353							-0.09452905075409035
QDDLPQEV	8	Unmodified	_QDDLPQEV_					0	0	0		ENST00000599420.5_1_19:17314011-17316785:+|nuORF	ENST00000599420.5_1_19:17314011-17316785:+|nuORF	ENST00000599420.5_1_19:17314011-17316785:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.2948303222656	2	472.221997	942.429441	0.24557	0.00011596	0.98618	0.0004657	1.2317	0.00058166	472.2223591838515	57.865	1.4644	57.956	57.604	59.068	0.091217					58	39	2	0	0	0	0.027866	1	6436	6436		53.351	19.179	1	243780			61581	17492	43291	43354	66770	66770					-0.0440769247843491
QDDLTEGGGSS	11	Unmodified	_QDDLTEGGGSS_					0	0	0			REV__ENSG00000183496|ENST00000329713|MEX3B	REV__ENSG00000183496|ENST00000329713|MEX3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2481079101562	2	533.220182	1064.42581	-0.57205	-0.00030503	3.1794	0.0016953	2.6074	0.0013903	533.2215146760686	48.794	0.22304	48.612	48.408	48.631	-0.18206					6	5	2	0	0	0	0.024736	1	4851	4851		22.58	11.069	1	187550	+		61582	27577	43292	43355	66771	66771					-0.10382407042948216
QDDQDDIHL	9	Unmodified	_QDDQDDIHL_					0	0	0		ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3370361328125	2	549.738542	1097.46253	-0.19719	-0.0001084	-0.06836	-3.758E-05	-0.26555	-0.00014598	549.7390798483591	68.12	0.30885	68.12	67.908	68.217	0					10	7	2	0	0	0	0.024466	1	8170	8170		39.253	14.734	1	73714			61583	3281	43293	43356	66772	66772					-0.08230110426393367
QDDQDGQVVE	10	Unmodified	_QDDQDGQVVE_					0	0	0			REV__ENSG00000153406|ENST00000283429|NMRAL1	REV__ENSG00000153406|ENST00000283429|NMRAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7672729492188	2	566.741282	1131.46801	-0.96705	-0.00054807	-3.6067	-0.0020441	-4.5738	-0.0025922	566.7397669643675	40.999	0.21235	41.022	40.934	41.147	0.023006					7	5	2	0	0	0	0.03519	1	3592	3592		42.864	16.171	1	172500	+		61584	24903	43294	43357	66773	66773					-0.092464316345513
QDDSRKTTGS	10	Unmodified	_QDDSRKTTGS_					0	0	0			REV__ENST00000496708.1_1_10:92980542-92982511:+|nuORF	REV__ENST00000496708.1_1_10:92980542-92982511:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.7559204101562	2	547.757266	1093.49998	0.28531	0.00015628	-2.6992	-0.0014785	-2.4139	-0.0013222	547.7557354475696	21.044	1.1233	20.848	20.533	21.657	-0.19577					44	22	4	0	0	0	1.0719	1	625	625		36.447	0	1	215670	+		61585	33834	43295	43358	66774	66774					-0.04303019160761323
QDDSRKTTGS	10	Unmodified	_QDDSRKTTGS_					0	0	0			REV__ENST00000496708.1_1_10:92980542-92982511:+|nuORF	REV__ENST00000496708.1_1_10:92980542-92982511:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.757266	1093.49998	0.033514	1.8358E-05	-2.4331	-0.0013327	-2.3996	-0.0013144	547.7558056113627	20.925	1.7238	20.748	20.435	22.159	-0.17665	-0.049794	0.00010346	NaN	36.447	72	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272510	+		61586	33834	43295	43358							-0.04303019160761323
QDDSRKTTGS	10	Unmodified	_QDDSRKTTGS_					0	0	0			REV__ENST00000496708.1_1_10:92980542-92982511:+|nuORF	REV__ENST00000496708.1_1_10:92980542-92982511:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	547.757266	1093.49998	0.28531	0.00015628	-2.6992	-0.0014785	-2.4139	-0.0013222	547.7557354475696	21.044	1.1233	20.848	20.533	21.657	-0.19577	0.049794	-0.00018808	NaN	36.447	44	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215670	+		61587	33834	43295	43358							-0.04303019160761323
QDEARPKRRA	10	Unmodified	_QDEARPKRRA_					0	0	0			REV__ENST00000485896.5_1_1:228288834-228289968:-|nuORF	REV__ENST00000485896.5_1_1:228288834-228289968:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	614.7666625976562	2	613.839259	1225.66397	-1.2421	-0.00076243	-1.4007	-0.00085978	-2.6427	-0.0016222	613.8383015979334	62.213	0.46085	62.035	61.804	62.265	-0.17782					29	11	3	0	0	0	0.03519	1	7027	7027		18.262	0	1	327230	+		61588	24282	43296	43359	66775	66775					0.06016043120644099
QDEFDYRYKT	10	Unmodified	_QDEFDYRYKT_					0	0	0		ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7586364746094	3	455.542091	1363.60444	-0.85646	-0.00039015	-4.1825	-0.0019053	-5.039	-0.0022955	455.5401706088648	33.351	0.56028	33.185	32.918	33.479	-0.16565					29	13	3	0	0	0	0.03519	1	2374	2374		6.001	0	1	163290			61589	5234	43297	43360	66776	66776					-0.06281317404068432
QDEFHPFIEA	10	Unmodified	_QDEFHPFIEA_					0	0	0		ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-2|NFIB;NFIB|p.L323Ffs*84|1|0.41|ENSG00000147862|chr9:14125722-14125723|AC/-|frameshift_variant;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;ENSG00000141905|ENST00000443272|NFIC;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;NFIX-RALGPS1|2|fusion;NFIX-RALGPS1|3|fusion;NFIX-RALGPS1|4|fusion;NFIX-RALGPS1|1|fusion	ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000008441|Q14938-5|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.56304931640625	3	411.524261	1231.55095	-0.054361	-2.2371E-05	-3.7768	-0.0015543	-3.8312	-0.0015766	411.85650867353075	32.92	0.61223	32.689	32.263	32.876	-0.23107					24	14	2	0	0	0	0.03519	1	2304	2304		24.232	20.823	1	220860			61590	847;5997	43298	43361	66777	66777					-0.05556070115903822
QDEFVELF	8	Unmodified	_QDEFVELF_					0	0	0			REV__ENSG00000126351|ENST00000450525|THRA	REV__ENSG00000126351|ENST00000450525|THRA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2538452148438	2	513.742565	1025.47058	-0.32077	-0.00016479	-2.5682	-0.0013194	-2.889	-0.0014842	513.7410467321394	29.154	0.71792	29.004	28.7	29.418	-0.14952					37	16	3	0	0	0	0.027866	1	1727	1727		30.504	6.3009	1	470890	+		61591	22890	43299	43362	66778	66778					-0.0411393143897385
QDEKAHLPTM	10	Unmodified	_QDEKAHLPTM_					0	0	0		ENSG00000155906|ENST00000444024|RMND1;nc|ENSG00000155906|Q9NWS8-3|RMND1;ENST00000491268.1_1_6:151757569-151766946:-|nuORF	ENSG00000155906|ENST00000444024|RMND1	ENSG00000155906|ENST00000444024|RMND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.3299560546875	2	585.284605	1168.55466	-0.76207	-0.00044603	2.0356	0.0011914	1.2735	0.00074538	585.7866216111922	60.057	0.18204	59.881	59.777	59.96	-0.1761					6	4	2	0	0	0	0.03519	1	6660	6660		49.442	8.6634	1	92658			61592	6499	43300	43363	66779	66779					-0.022877236136991996
QDELGQGF	8	Unmodified	_QDELGQGF_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2584228515625	2	447.203607	892.392661	0.12994	5.8111E-05	-2.9595	-0.0013235	-2.8295	-0.0012654	447.20224332451926	42.72	0.54269	42.72	42.389	42.932	0					22	14	2	0	0	0	0.027866	1	3917	3917		20.947	4.4738	1	175050	+		61593	36496	43301	43364	66780	66780					-0.057839443043235406
QDELKRVK	8	Unmodified	_QDELKRVK_					0	0	0			REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2353210449219	2	508.298373	1014.58219	-0.42151	-0.00021426	-0.92957	-0.0004725	-1.3511	-0.00068676	508.2975573275197	30.975	0.74519	31.046	30.623	31.368	0.071108					28	17	2	0	0	0	0.027866	1	1974	1974		26.693	1.1189	1	195360	+		61594	22376	43302	43365	66781	66781					0.07548547708847764
QDELSLQSL	9	Unmodified	_QDELSLQSL_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.7891845703125	2	516.764029	1031.5135	-0.38505	-0.00019898	-1.2842	-0.00066363	-1.6692	-0.00086261	517.2634561035165	94.038	0.2771	94.038	93.951	94.228	-0.00022888					9	6	2	0	0	0	0.019436	1	11910	11910		85.161	0	1	123470	+		61595	21710	43303	43366	66782	66782					-0.0009916138151311316
QDENDNSPEVT	11	Unmodified	_QDENDNSPEVT_					0	0	0		nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.89178466796875	3	416.505594	1246.49495	-0.23215	-9.669E-05	4.3209	0.0017997	4.0888	0.001703	416.5073082322251	33.843	0.43771	33.619	33.446	33.883	-0.22412					14	10	2	0	0	0	0.024723	1	2422	2422		10.562	0	1	94249			61596	11050	43304	43367	66783	66783					-0.11843367814071826
QDENMPSQYL	10	Unmodified	_QDENMPSQYL_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	612.765380859375	2	612.763703	1223.51285	-0.70469	-0.00043181	3.856	0.0023628	3.1514	0.001931	612.7658240592725	61.499	0.79439	61.499	61.18	61.974	0					55	20	4	0	0	0	1.0122	1	7132	7132		44.377	2.9506	1	2115900			61597	3602	43305	43368	66784	66784					-0.08996324092868235
QDEPVKIFV	9	Unmodified	_QDEPVKIFV_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7969360351562	2	537.795132	1073.57571	-0.90747	-0.00048803	4.2122	0.0022653	3.3048	0.0017773	537.7972456256986	77.675	3.3997	77.691	76.575	79.974	0.015907					185	81	3	0	0	0	0.53979	1	9511	9511		56.721	1.9987	1	2174400	+		61598	24188	43306	43369	66785	66785					0.0418660975747116
QDEVKFQHDNF	11	Unmodified	_QDEVKFQHDNF_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.5497741699219	3	469.549357	1405.62624	-1.6064	-0.00075427	2.0951	0.00098376	0.48874	0.00022949	469.55029509710454	40.771	0.9226	40.541	40.235	41.157	-0.23029					70	24	4	0	0	0	1.0471	1	3545	3545		25.892	0	1	2696700			61599	3344	43307	43370	66786	66786					-0.06034512655469371
QDEYDSGTDI	10	Unmodified	_QDEYDSGTDI_					0	0	0			REV__nc|ENSG00000154027|Q9Y6K8-3|AK5	REV__nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.7280883789062	2	571.72784	1141.44113	-1.7971	-0.0010275	2.0272	0.001159	0.23002	0.00013151	571.7289084920742	51.951	1.1507	51.682	51.321	52.471	-0.26903					88	30	4	0	0	0	1.1081	1	5363	5363		31.634	2.4642	1	4356600	+		61600	24928	43308	43371	66787	66787					-0.12393540245761869
QDFEADIPP	9	Unmodified	_QDFEADIPP_					0	0	0		ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	ENST00000565923.5_1_15:75287957-75310150:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.264404296875	2	516.237647	1030.46074	-0.97949	-0.00050565	-1.4935	-0.00077099	-2.473	-0.0012766	516.2366289930021	29.256	0.36108	29.335	29.128	29.489	0.078344					17	8	3	0	0	0	0.024457	1	1706	1706		29.15	14.285	1	144370			61601	10203	43309	43372	66788	66788					-0.053271194443368586
QDFLLQDSR	9	Unmodified	_QDFLLQDSR_					0	0	0			REV__nc|ENSG00000095397|Q9P202-2|WHRN	REV__nc|ENSG00000095397|Q9P202-2|WHRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.8060302734375	2	561.28292	1120.55129	-0.29108	-0.00016338	0.49338	0.00027693	0.2023	0.00011355	561.28298811495	57.474	0.33701	57.474	57.266	57.603	0					23	8	3	0	0	0	0.024389	1	6464	6464		42.864	2.8061	1	1793500	+		61602	20964	43310	43373	66789	66789					-0.004166503960504997
QDFLLSQMSQH	11	Unmodified	_QDFLLSQMSQH_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.74542236328125	3	445.211688	1332.61324	1.7869	0.00079554	0.59763	0.00026607	2.3845	0.0010616	445.21198440440685	24.854	0.52245	24.682	24.427	24.95	-0.17151					18	11	2	0	0	0	0.02476	1	1071	1071		38.714	4.6276	1	198590			61603	1078	43311	43374	66790	66790					-0.03976667039205495
QDFYQEVANPL	11	Unmodified	_QDFYQEVANPL_					0	0	0		CON__Q3T052;ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	CON__Q3T052;nc|ENSG00000055955|Q14624-4|ITIH4	CON__Q3T052	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.23101806640625	3	441.878704	1322.61428	-0.36168	-0.00015982	-3.0919	-0.0013663	-3.4536	-0.0015261	442.21229870949827	47.317	0.23192	47.22	47.046	47.278	-0.096649					6	5	2	0	0	0	0.024747	1	4610	4610		33.039	5.3955	1	44823		+	61604	555;1192	43312	43375	66791	66791					-0.03412129398657271
QDGAGLWSH	9	Unmodified	_QDGAGLWSH_					0	0	0			REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|67|2|anti-sense	REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|67|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2716064453125	2	485.722498	969.430444	-0.14371	-6.9802E-05	0.64187	0.00031177	0.49816	0.00024197	485.722663865749	32.765	0.61172	32.53	32.34	32.952	-0.2352					24	14	3	0	0	0	0.024412	1	2308	2308		24.203	4.8428	1	239930	+		61605	37624	43313	43376	66792	66792					-0.05549433318856245
QDGAGLWSH	9	Unmodified	_QDGAGLWSH_					0	0	0			REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|67|2|anti-sense	REV__SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|67|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.27197265625	2	485.722498	969.430444	-0.10261	-4.9838E-05	0.34554	0.00016784	0.24293	0.000118	485.72252874294423	32.728	0.84066	32.565	32.279	33.12	-0.16288					29	20	2	0	0	0	0.024412	1	2267	2267		24.203	4.8428	1	256260	+		61606	37624	43313	43376	66793	66793					-0.05549433318856245
QDGGEYTCVAS	11	Unmodified	_QDGGEYTCVAS_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;ENST00000485744.5_1_1:185931700-185962449:+|nuORF;nc|ENSG00000143341|Q96RW7-3|HMCN1	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8355712890625	2	565.226953	1128.43935	0.34739	0.00019635	-0.36905	-0.0002086	-0.021661	-1.2244E-05	565.2265892364043	21.602	0.95275	21.425	21.113	22.066	-0.17721					39	19	3	0	0	0	0.024736	1	724	724		16.717	0	1	117110			61607	5635	43314	43377	66794	66794					-0.11972872535352508
QDGGSFIRKV	10	Unmodified	_QDGGSFIRKV_					0	0	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.774169921875	2	553.80128	1105.58801	-0.67258	-0.00037248	0.54371	0.00030111	-0.12887	-7.1371E-05	553.8014711281339	57.501	0.56207	57.267	57.061	57.624	-0.23363					24	14	2	0	0	0	0.03519	1	6313	6313		31.53	4.8369	1	489940	+		61608	24628	43315	43378	66795	66795					0.03943646220500341
QDGHYLVSI	9	Unmodified	_QDGHYLVSI_					0	0	0		FSTL5|p.P701Q|1|0.38|ENSG00000168843|chr4:161386189-161386189|G/T|missense_variant	FSTL5|p.P701Q|1|0.38|ENSG00000168843|chr4:161386189-161386189|G/T|missense_variant	FSTL5|p.P701Q|1|0.38|ENSG00000168843|chr4:161386189-161386189|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.299560546875	2	516.261456	1030.50836	0.40166	0.00020736	-1.7556	-0.00090633	-1.3539	-0.00069897	516.2597045250949	104.08	0.17058	103.91	103.77	103.94	-0.16791					5	3	2	0	0	0	0.023842	1	12937	12937		77.318	3.0625	1	46695			61609	17662	43316	43379	66796	66796					-0.005674204534898308
QDGKEQPE	8	Unmodified	_QDGKEQPE_					0	0	0		ENSG00000089159|ENST00000637617|PXN	ENSG00000089159|ENST00000637617|PXN	ENSG00000089159|ENST00000637617|PXN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.28656005859375	2	465.711796	929.40904	-0.23352	-0.00010875	2.5039	0.0011661	2.2704	0.0010573	465.71309378650847	75.545	0.23959	75.287	75.158	75.398	-0.25866					8	5	2	0	0	0	0.027866	1	8945	8945		23.042	0	1	177880			61610	1897	43317	43380	66797	66797					-0.05848863138237448
QDGKQLGGN	9	Unmodified	_QDGKQLGGN_					0	0	0			REV__ENSG00000144677|ENST00000273179|CTDSPL	REV__ENSG00000144677|ENST00000273179|CTDSPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2689514160156	2	458.727781	915.441008	-0.27729	-0.0001272	-3.7895	-0.0017384	-4.0668	-0.0018656	458.7259091562602	49.015	1.5813	48.863	48.125	49.706	-0.15277					55	43	2	0	0	0	0.024427	1	4912	4912		34.173	3.6689	1	170180	+		61611	24352	43318	43381	66798	66798					-0.020094506644227295
QDGLPMPLL	9	Unmodified	_QDGLPMPLL_					0	0	0			REV__ENST00000375863.7_1_6:31646933-31647026:-|nuORF	REV__ENST00000375863.7_1_6:31646933-31647026:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.266845703125	2	492.265153	982.515753	-0.23364	-0.00011501	4.3872	0.0021597	4.1536	0.0020447	492.2669179923295	37.045	0.99952	37.078	36.678	37.677	0.032269					73	25	4	0	0	0	0.35646	1	2932	2932		68.787	0	1	11695000	+		61612	31342	43319	43382	66799	66799					0.02379595822594638
QDGRRIVK	8	Unmodified	_QDGRRIVK_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.28167724609375	2	486.290882	970.567212	-0.25384	-0.00012344	3.4328	0.0016694	3.179	0.0015459	486.2922646297194	85.832	1.0988	85.775	85.355	86.454	-0.057617					49	25	3	0	0	0	0.027866	1	10781	10781		35.618	0	1	309750	+		61613	23894	43320	43383	66800	66800					0.08075100631504029
QDHLPLLP	8	Unmodified	_QDHLPLLP_					0	0	0		ENSG00000259803|ENST00000682282|SLC22A31;nc|ENSG00000259803|A6NKX4|SLC22A31	ENSG00000259803|ENST00000682282|SLC22A31	ENSG00000259803|ENST00000682282|SLC22A31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.73138427734375	2	466.763635	931.512717	-0.18196	-8.4932E-05	4.3431	0.0020272	4.1611	0.0019423	466.7655761005404	60.418	0.37184	60.216	60.096	60.467	-0.20158					12	8	3	0	0	0	0.027866	1	6728	6728		27.882	0	1	74803			61614	10936	43321	43384	66801	66801					0.04422088760088627
QDHLTVAKV	9	Unmodified	_QDHLTVAKV_					0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7136535644531	2	505.785099	1009.55564	-0.64938	-0.00032845	0.20121	0.00010177	-0.44818	-0.00022668	505.78516531207504	29.347	0.34686	29.175	28.937	29.284	-0.17258					16	7	3	0	0	0	0.024397	1	1788	1788		18.262	0	1	175290	+		61615	23173	43322	43385	66802	66802					0.05124858817521272
QDHLVNESKTK	11	Unmodified	_QDHLVNESKTK_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.74481201171875	3	433.561486	1297.66263	-0.4992	-0.00021644	1.5408	0.00066803	1.0416	0.00045159	433.562032816401	28.321	0.54102	28.152	27.926	28.467	-0.16897					21	12	3	0	0	0	0.024767	1	1618	1618		10.562	0	1	69616	+		61616	24990	43323	43386	66803	66803					0.02570364241205425
QDHLWGWLYL	10	Unmodified	_QDHLWGWLYL_					0	0	0			REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2666931152344	3	444.224146	1329.65061	-0.58007	-0.00025768	1.1232	0.00049893	0.54308	0.00024125	444.5597273375648	29.433	0.2779	29.512	29.368	29.646	0.078346					9	6	2	0	0	0	0.03519	1	1747	1747		19.263	2.5453	1	47422	+		61617	32817	43324	43387	66804	66804					-0.0010320771129954665
QDIADEFRA	9	Unmodified	_QDIADEFRA_					0	0	0		nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	nc|ENSG00000173889|Q8NDX5-2|PHC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.791748046875	2	532.753995	1063.49344	-0.43278	-0.00023057	-1.3544	-0.00072156	-1.7872	-0.00095212	533.2542496139475	45.584	0.44193	45.485	45.189	45.63	-0.098637					19	12	2	0	0	0	0.024447	1	4344	4344		49.442	11.63	1	395860			61618	8420	43325	43388	66805	66805					-0.03576912321477721
QDIDGRPLYI	10	Unmodified	_QDIDGRPLYI_					0	0	0		ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.2778930664062	2	595.31422	1188.61389	-0.89784	-0.0005345	2.9066	0.0017303	2.0088	0.0011958	595.3158151312451	46.339	0.53538	46.078	45.777	46.313	-0.26118					23	13	2	0	0	0	0.03519	1	4417	4417		17.468	0	1	211750			61619	2477	43326	43389	66806	66806					0.027124956721536364
QDIDLGVSGE	10	Unmodified	_QDIDLGVSGE_					0	0	0		NFE2L2|p.R34G|1|0.33|ENSG00000116044|chr2:177234217-177234217|G/C|missense_variant	NFE2L2|p.R34G|1|0.33|ENSG00000116044|chr2:177234217-177234217|G/C|missense_variant	NFE2L2|p.R34G|1|0.33|ENSG00000116044|chr2:177234217-177234217|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7474365234375	2	516.745836	1031.47712	0.0088777	4.5875E-06	3.7521	0.0019389	3.761	0.0019435	516.7476483690072	63.629	1.0064	63.436	63.109	64.115	-0.19243					75	25	4	0	0	0	1.0122	1	7218	7218		44.377	0	1	4368200			61620	18870	43327	43390	66807	66807					-0.03736038278225351
QDIEIVEKMD	10	Unmodified	_QDIEIVEKMD_					0	0	0			REV__ENSG00000136144|ENST00000378302|RCBTB1	REV__ENSG00000136144|ENST00000378302|RCBTB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2109680175781	3	407.200678	1218.5802	-0.13785	-5.6131E-05	-2.438	-0.00099277	-2.5759	-0.0010489	407.19900147262524	27.554	1.0784	27.386	26.809	27.887	-0.16816					36	25	2	0	0	0	0.03519	1	1494	1494		31.634	0.56612	1	424440	+		61621	23628	43328	43391	66808	66808					-0.020342938819339906
QDIKSTGGF	9	Unmodified	_QDIKSTGGF_					0	0	0			REV__ENSG00000145863|ENST00000274545|GABRA6	REV__ENSG00000145863|ENST00000274545|GABRA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.251953125	2	476.740357	951.46616	-0.2516	-0.00011995	0.17083	8.1443E-05	-0.080771	-3.8507E-05	476.7401696148511	26.948	0.54508	26.706	26.45	26.995	-0.24217					16	12	2	0	0	0	0.024457	1	1482	1482		29.15	0	1	146090	+		61622	24439	43329	43392	66809	66809					-0.011513958618479592
QDINDNPPV	9	Unmodified	_QDINDNPPV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8161926269531	2	506.240721	1010.46689	-0.86414	-0.00043746	2.3228	0.0011759	1.4586	0.00073842	506.7435575128825	68.77	0.52608	68.508	68.22	68.747	-0.26166					20	12	2	0	0	0	0.022587	1	7918	7918		108.09	22.927	1	153110			61623	9828	43330	43393	66810	66810					-0.03792601212808222
QDINDNPPV	9	Unmodified	_QDINDNPPV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.240721	1010.46689	-0.45438	-0.00023002	7.8303	0.003964	7.3759	0.003734	506.2446521281661	68.633	0.53276	68.633	68.444	68.977	0	0.036001	0.0037638	NaN	108.09	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104280			61624	9828	43330	43393							-0.03792601212808222
QDINDNPPV	9	Unmodified	_QDINDNPPV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.240721	1010.46689	0.092	4.6574E-05	8.2065	0.0041545	8.2985	0.004201	506.2442414454296	68.959	0.5336	68.666	68.326	68.86	-0.29266	0.069245	0.0041447	NaN	108.09	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97691			61625	9828	43330	43393							-0.03792601212808222
QDINDNPPV	9	Unmodified	_QDINDNPPV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.240721	1010.46689	0.16839	8.5248E-05	8.791	0.0044504	8.9594	0.0045356	506.24491137391766	68.741	0.47725	68.756	68.423	68.9	0.015129	0.1593	0.0047366	NaN	108.09	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100840			61626	9828	43330	43393							-0.03792601212808222
QDINDNPPV	9	Unmodified	_QDINDNPPV_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.240721	1010.46689	0.21808	0.0001104	1.5316	0.00077536	1.7497	0.00088577	506.2415838776607	68.751	0.44052	68.509	68.266	68.707	-0.24277	-0.088497	-0.0026135	NaN	108.09	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145910			61627	9828	43330	43393							-0.03792601212808222
QDIPCLALP	9	Unmodified	_QDIPCLALP_					0	0	0		nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR	nc|ENSG00000168453|O43593-2|HR	nc|ENSG00000168453|O43593-2|HR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2713623046875	2	485.257328	968.500103	-0.047657	-2.3126E-05	3.6539	0.0017731	3.6062	0.0017499	485.2589526050319	32.508	1.1045	32.35	31.861	32.966	-0.15772					61	26	4	0	0	0	0.024405	1	2289	2289		44.117	9.9443	1	786500			61628	7827	43331	43394	66811	66811					0.014593093055395912
QDITDVCFS	9	Unmodified	_QDITDVCFS_					0	0	0		nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10;ENSG00000241322|ENST00000395906|FBXW10B	nc|ENSG00000171931|Q5XX13-3|FBXW10	nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8189086914062	2	514.223682	1026.43281	-0.99795	-0.00051317	-0.89708	-0.0004613	-1.895	-0.00097447	514.2243006740603	68.716	0.24489	68.455	68.341	68.586	-0.26166					7	5	2	0	0	0	0.024457	1	7938	7938		15.642	0	1	51753			61629	8218	43332	43395	66812	66812					-0.0793476569606355
QDIYGILLI	9	Unmodified	_QDIYGILLI_					0	0	0			REV__ENST00000585033.1_1_18:641361-657928:-|nuORF	REV__ENST00000585033.1_1_18:641361-657928:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.7845458984375	2	524.307875	1046.6012	-0.41729	-0.00021879	-0.36157	-0.00018957	-0.77886	-0.00040836	524.3076706113509	65.406	0.48952	65.155	64.905	65.395	-0.25112					18	11	2	0	0	0	0.024427	1	7423	7423		34.173	8.5985	1	425030	+		61630	35566	43333	43396	66813	66813					0.07976084279903262
QDKCTLQLM	9	Unmodified	_QDKCTLQLM_					0	0	0			REV__ENST00000546645.1_1_12:56212536-56212590:+|nuORF	REV__ENST00000546645.1_1_12:56212536-56212590:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2645263671875	2	540.264827	1078.5151	-1.4554	-0.00078629	1.5967	0.00086265	0.14134	7.6359E-05	540.2656759668722	20.97	0.83457	20.97	20.656	21.491	0					37	16	3	0	0	0	0.85329	1	607	607		35.618	0	1	211670	+		61631	34847	43334	43397	66814	66814					-0.021015668887685024
QDKEQLFLL	9	Unmodified	_QDKEQLFLL_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7674560546875	2	567.313689	1132.61282	-0.77638	-0.00044045	0.23125	0.00013119	-0.54513	-0.00030926	567.3137220240072	41.301	0.55833	41.324	41.005	41.564	0.023003					31	15	3	0	0	0	0.02435	1	3632	3632		60.972	0	1	278980	+		61632	28792	43335	43398	66815	66815					0.05182281303223135
QDKEYYKVE	9	Unmodified	_QDKEYYKVE_					0	0	0			REV__nc|ENSG00000116106|P54764-2|EPHA4	REV__nc|ENSG00000116106|P54764-2|EPHA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.9035339355469	3	401.196033	1200.56627	0.30479	0.00012228	3.5865	0.0014389	3.8913	0.0015612	401.1978963415045	30.784	0.46671	30.542	30.366	30.833	-0.24248					18	10	2	0	0	0	0.02438	1	1999	1999		38.754	13.686	1	75142	+		61633	22256	43336	43399	66816	66816					-0.02599203318709442
QDKIHALTMR	10	Unmodified	_QDKIHALTMR_					0	0	0			REV__nc|ENSG00000204520|Q29983-2|MICA	REV__nc|ENSG00000204520|Q29983-2|MICA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5600891113281	3	404.888768	1211.64448	-1.321	-0.00053486	4.2876	0.001736	2.9666	0.0012011	404.89038442596546	33.637	1.2672	33.471	33.195	34.462	-0.16565					76	31	3	0	0	0	0.03519	1	2375	2375		26.75	3.7072	1	268590	+		61634	28613	43337	43400	66817	66817					0.04711950785508634
QDKIMTMLH	9	Unmodified	_QDKIMTMLH_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.3216552734375	2	558.780644	1115.54674	0.39414	0.00022024	-2.2948	-0.0012823	-1.9006	-0.001062	558.778245783792	72.394	0.85529	72.112	71.731	72.586	-0.28124					37	21	3	0	0	0	0.024025	1	8810	8810		71.877	41.56	1	350990			61635	14205	43338	43401	66818	66818					-0.006415741348291704
QDKIMTMLH	9	Unmodified	_QDKIMTMLH_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.780644	1115.54674	-0.03487	-1.9485E-05	-3.6707	-0.0020511	-3.7056	-0.0020706	558.7785890672824	72.325	0.32607	72.048	71.828	72.154	-0.2769	-0.023384	-0.00019045	NaN	71.877	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154640			61636	14205	43338	43401							-0.006415741348291704
QDKIMTMLH	9	Unmodified	_QDKIMTMLH_					0	0	0		ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	ENST00000432460.1_3_2:219523811-219524039:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.780644	1115.54674	0.36252	0.00020257	-4.1915	-0.0023421	-3.829	-0.0021396	558.7785473110689	72.368	0.41135	72.103	71.758	72.17	-0.26479	0.031815	-0.00077249	NaN	71.877	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121480			61637	14205	43338	43401							-0.006415741348291704
QDKKGMMID	9	Unmodified	_QDKKGMMID_					0	0	0		nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L;nc|ENSG00000165359|Q5JSJ4-4|INTS6L	nc|ENSG00000165359|Q5JSJ4|INTS6L	nc|ENSG00000165359|Q5JSJ4|INTS6L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.3054809570312	2	533.257002	1064.49945	-1.2005	-0.00064017	0.67697	0.000361	-0.52353	-0.00027917	533.2571789977947	62.913	0.90725	62.913	62.651	63.558	0					49	23	3	0	0	0	0.024374	1	7376	7376		32.812	4.9302	1	1551300			61638	7404	43339	43402	66819	66819					-0.030218534058121804
QDKLGEVNT	9	Unmodified	_QDKLGEVNT_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.25799560546875	2	502.256371	1002.49819	0.019945	1.0017E-05	2.7807	0.0013966	2.8006	0.0014066	502.2576940781397	24.267	0.72784	24.052	23.778	24.506	-0.2151					36	16	3	0	0	0	0.64897	1	1044	1044		49.536	1.8787	1	652730			61639	3031	43340	43403	66820	66820					-0.0029602817870681974
QDKLQQVSTQL	11	Unmodified	_QDKLQQVSTQL_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	644.3489990234375	2	644.348791	1286.68303	1.2708	0.00081885	0.18037	0.00011622	1.4512	0.00093507	644.3487776389134	110.32	0.48068	110.31	110.08	110.56	-0.009491					54	18	4	0	0	0	1.0429	1	13944	13944		27.047	0.3544	1	630130	+		61640	21657	43341	43404	66821	66821					0.05115534901051433
QDKMYSYSSD	10	Unmodified	_QDKMYSYSSD_					0	0	0		ENST00000478830.1_1_3:108541759-108557851:+|nuORF;ENST00000493604.5_1_3:108541759-108565993:+|nuORF;ENSG00000163519|ENST00000295756|TRAT1;TRAT1|p.H49Q|1|0.13|ENSG00000163519|chr3:108838962-108838962|C/A|missense_variant	ENST00000478830.1_1_3:108541759-108557851:+|nuORF	ENST00000478830.1_1_3:108541759-108557851:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1829833984375	3	408.501016	1222.48122	1.3336	0.00054479	3.2601	0.0013318	4.5938	0.0018766	408.5024281602824	24.971	0.3933	24.799	24.599	24.993	-0.17151					13	8	2	0	0	0	0.03519	1	1101	1101		31.634	3.9903	1	55777			61641	7095	43342	43405	66822	66822					-0.12112316846832982
QDKQPCLDL	9	Unmodified	_QDKQPCLDL_					0	0	0		MYO19|p.N469K|1|0.55|ENSG00000278259|chr17:36507459-36507459|G/C|missense_variant	MYO19|p.N469K|1|0.55|ENSG00000278259|chr17:36507459-36507459|G/C|missense_variant	MYO19|p.N469K|1|0.55|ENSG00000278259|chr17:36507459-36507459|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3003540039062	2	530.260599	1058.50665	-1.7832	-0.00094554	0.59542	0.00031573	-1.1877	-0.00062981	530.2607956899923	30.434	0.53749	30.434	30.096	30.634	0					20	12	2	0	0	0	0.024484	1	1923	1923		30.318	11.214	1	72859			61642	18012	43343	43406	66823	66823					-0.020267975337446842
QDKQPYLLG	9	Unmodified	_QDKQPYLLG_					0	0	0			REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF	REV__ENST00000219169.8_1_16:67905422-67905869:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3004150390625	2	531.284931	1060.55531	-1.7559	-0.00093289	-1.9428	-0.0010322	-3.6988	-0.0019651	531.2837910642195	30.405	0.53318	30.405	30.017	30.55	0					22	12	3	0	0	0	0.02435	1	1932	1932		34.173	0	1	197270	+		61643	29333	43344	43407	66824	66824					0.02745439097657254
QDKRQLEWASI	11	Unmodified	_QDKRQLEWASI_					0	0	0			REV__ENSG00000065268|ENST00000585809|WDR18	REV__ENSG00000065268|ENST00000585809|WDR18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.263916015625	3	458.577247	1372.70991	0.24527	0.00011248	1.6131	0.00073973	1.8584	0.00085221	458.5782090664504	42.138	0.43411	42.164	41.993	42.427	0.026012					30	12	3	0	0	0	0.024757	1	3793	3793		20.315	0	1	345080	+		61644	20304	43345	43408	66825	66825					0.03846643512224546
QDKSLSRNIS	10	Unmodified	_QDKSLSRNIS_					0	0	0		ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	ENSG00000135540|ENST00000343505|NHSL1	ENSG00000135540|ENST00000343505|NHSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.2904052734375	2	574.306926	1146.5993	0.11126	6.3895E-05	-3.5319	-0.0020284	-3.4207	-0.0019645	574.3053658196891	80.305	1.4049	80.098	79.548	80.953	-0.20632					48	33	3	0	0	0	0.03519	1	9634	9634		28.081	4.5588	1	150770			61645	4906	43346	43409	66826	66826					0.03186423524016391
QDKTVRFW	8	Unmodified	_QDKTVRFW_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.73828125	2	540.285266	1078.55598	0.33092	0.00017879	3.7154	0.0020074	4.0463	0.0021862	540.2875982506192	36.871	0.44185	36.662	36.364	36.806	-0.2092					17	10	2	0	0	0	0.027866	1	2901	2901		30.504	14.03	1	114080			61646	1789	43347	43410	66827	66827					0.01984278537361206
QDKTYGKGGEG	11	Unmodified	_QDKTYGKGGEG_					0	0	0			REV__ENSG00000164031|ENST00000442697|DNAJB14	REV__ENSG00000164031|ENST00000442697|DNAJB14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2723999023438	2	570.27001	1138.52547	0.13845	7.8954E-05	3.2779	0.0018693	3.4163	0.0019482	570.2718213692953	49.807	0.94471	49.527	49.201	50.145	-0.27977					43	24	2	0	0	0	0.90172	1	5028	5028		51.528	5.5758	1	5570600	+		61647	25672	43348	43411	66828	66828					-0.03825544638334577
QDKVHYYI	8	Unmodified	_QDKVHYYI_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.8231811523438	2	533.271824	1064.5291	0.0074617	3.9791E-06	0.44086	0.0002351	0.44833	0.00023908	533.7736289809436	52.492	0.20127	52.345	52.287	52.488	-0.14723					6	4	2	0	0	0	0.027866	1	5596	5596		23.042	1.0826	1	41697			61648	5332	43349	43412	66829	66829					-0.0005883007381726202
QDKVMKKL	8	Unmodified	_QDKVMKKL_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7657775878906	2	495.294245	988.573937	-0.77447	-0.00038359	-0.16712	-8.2774E-05	-0.94159	-0.00046636	495.2938667440582	40.725	0.52371	40.589	40.345	40.869	-0.13554					19	13	2	0	0	0	0.027866	1	3560	3560		24.203	0	1	238690	+		61649	28263	43350	43413	66830	66830					0.07919277467874508
QDKYSSTR	8	Unmodified	_QDKYSSTR_					0	0	0		nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3296203613281	2	492.740888	983.467223	3.239	0.001596	-2.3227	-0.0011445	0.91628	0.00045149	492.73956421661467	18.392	0.30034	18.15	18.024	18.324	-0.24256					11	5	3	0	0	0	0.027866	1	279	279		49.442	0	1	33418			61650	18266	43351	43414	66831	66831					-0.025171814929422
QDLAIELIE	9	Unmodified	_QDLAIELIE_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3079833984375	2	522.284597	1042.55464	-0.65443	-0.0003418	0.26242	0.00013706	-0.39201	-0.00020474	522.284741729893	32.356	0.26777	32.368	32.182	32.45	0.011795					8	6	2	0	0	0	0.022832	1	2230	2230		93.195	18.94	1	55580	+		61651	36468	43352	43415	66832	66832					0.03506599657953302
QDLANLIKV	9	Unmodified	_QDLANLIKV_					0	0	0		nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL	nc|ENSG00000136155|O95171-3|SCEL	nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2691650390625	2	507.303124	1012.5917	-0.87133	-0.00044203	0.38576	0.0001957	-0.48557	-0.00024633	507.30318165886536	44.835	0.47012	44.736	44.472	44.942	-0.099445					22	11	3	0	0	0	0.024319	1	4200	4200		24.519	5.4157	1	484720			61652	4989	43353	43416	66833	66833					0.08590315994376851
QDLCYTDI	8	Unmodified	_QDLCYTDI_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2557373046875	2	485.71295	969.411348	-0.44506	-0.00021617	4.0693	0.0019765	3.6243	0.0017604	485.71473297584924	52.759	1.6659	52.759	52.513	54.179	0					67	45	3	0	0	0	0.027866	1	5733	5733		30.504	0	1	385640			61653	2945	43354	43417	66834	66834					-0.07458150724778534
QDLEIRLN	8	Unmodified	_QDLEIRLN_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;MYO5C|p.K1417Ffs*20|1|0.14|ENSG00000128833|chr15:52211777-52211778|-/TCTCTTTCTCAACAATGTTTGCTAAATAACTGAA|frameshift_variant	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.791015625	2	500.774731	999.534909	-0.45157	-0.00022614	-0.62752	-0.00031425	-1.0791	-0.00054038	500.77482319852726	30.043	0.9243	29.894	29.377	30.301	-0.14952					61	21	4	0	0	0	0.027866	1	1821	1821		25.574	0	1	585310			61654	4315	43355	43418	66835	66835					0.035122684378507074
QDLEKKERKRL	11	Unmodified	_QDLEKKERKRL_					0	0	0		ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2832336425781	3	481.619447	1441.83651	0.25039	0.00012059	-3.8176	-0.0018386	-3.5672	-0.0017181	481.6176727870229	101.29	1.5008	101.16	100.6	102.11	-0.12576					74	38	2	0	0	0	0.024809	1	12618	12618		17.167	6.6049	1	526100			61655	8886	43356	43419	66836	66836					0.13326569737341742
QDLEVEQAL	9	Unmodified	_QDLEVEQAL_					0	0	0		ENSG00000125347|ENST00000245414|IRF1;ENST00000459982.5_1_5:131821868-131826375:-|nuORF;ENST00000472045.1_1_5:131821868-131822486:-|nuORF	ENSG00000125347|ENST00000245414|IRF1	ENSG00000125347|ENST00000245414|IRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7647094726562	2	522.764029	1043.5135	-1.7551	-0.0009175	2.3696	0.0012387	0.61447	0.00032122	522.7652668598829	30.337	0.90276	30.337	30.017	30.92	0					45	21	4	0	0	0	0.35556	1	1947	1947		68.846	5.3123	1	1696400			61656	4096	43357	43420	66837	66837					-0.006511613815291639
QDLFKKNL	8	Unmodified	_QDLFKKNL_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.762939453125	2	503.290017	1004.56548	-0.19696	-9.9129E-05	-1.4869	-0.00074833	-1.6838	-0.00084746	503.28909615114185	47.579	0.96791	47.392	47.084	48.052	-0.18684					40	25	3	0	0	0	0.027866	1	4699	4699		38.806	0	1	656940	+		61657	36781	43358	43421	66838	66838					0.06338046822895649
QDLGYLMLQ	9	Unmodified	_QDLGYLMLQ_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.29736328125	2	540.773342	1079.53213	-1.0171	-0.00055001	-0.15928	-8.6132E-05	-1.1764	-0.00063614	540.7735834753067	64.448	0.32892	64.185	64.012	64.341	-0.2626					11	8	2	0	0	0	0.024418	1	7548	7548		37.812	2.1932	1	131020	+		61658	27318	43359	43422	66839	66839					-0.004453230113085738
QDLHVPRR	8	Unmodified	_QDLHVPRR_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.7685852050781	2	510.788507	1019.56246	-0.53813	-0.00027487	3.3157	0.0016936	2.7775	0.0014187	510.78996474340835	69.124	0.68748	69.139	68.9	69.588	0.015129					28	17	3	0	0	0	0.027866	1	8220	8220		49.442	18.938	1	454990	+		61659	20831	43360	43423	66840	66840					0.05346216488749178
QDLIAAIQV	9	Unmodified	_QDLIAAIQV_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2;REV__nc|ENSG00000204130|Q8WXA3-3|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.31768798828125	2	485.782025	969.549496	-0.23759	-0.00011541	0.51247	0.00024895	0.27488	0.00013353	485.7822239841549	65.636	0.49482	65.385	65.108	65.603	-0.25112					16	11	2	0	0	0	0.024436	1	7519	7519		23.042	0	1	106660	+		61660	37075;37076	43361	43424	66841	66841					0.06350340585993308
QDLKDKSRSIL	11	Unmodified	_QDLKDKSRSIL_					0	0	0			REV__ENSG00000149084|ENST00000278353|HSD17B12	REV__ENSG00000149084|ENST00000278353|HSD17B12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7796630859375	3	434.917381	1301.73031	0.010802	4.6978E-06	-4.3557	-0.0018944	-4.3449	-0.0018897	434.91548210313186	46.975	0.77684	46.878	46.608	47.385	-0.096649					36	20	2	0	0	0	0.024735	1	4532	4532		27.644	17.057	1	472430	+		61661	24651	43362	43425	66842	66842					0.0915181417203712
QDLLFKWL	8	Unmodified	_QDLLFKWL_					0	0	0		ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8026733398438	2	531.80276	1061.59097	-1.3094	-0.00069636	-0.076634	-4.0754E-05	-1.3861	-0.00073711	531.8031877322056	79.468	1.6323	79.296	78.861	80.493	-0.17226					77	38	4	0	0	0	0.97794	1	9835	9835		40.778	0.20554	1	758160			61662	11855	43363	43426	66843	66843					0.06263521345317713
QDLLFKWLDNW	11	Unmodified	_QDLLFKWLDNW_					0	0	0		ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.78509521484375	3	493.253993	1476.74015	0.1509	7.4433E-05	2.3317	0.0011501	2.4826	0.0012246	493.255107925336	25.28	0.61742	25.36	25.174	25.792	0.080088					27	14	3	0	0	0	0.024809	1	1170	1170		22.562	10.129	1	68563			61663	11855	43364	43427	66844	66844					0.02085002177432216
QDLLNIVF	8	Unmodified	_QDLLNIVF_					0	0	0		ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.2693786621094	2	481.271293	960.528032	-0.58904	-0.00028349	-3.8179	-0.0018374	-4.4069	-0.0021209	481.269395030592	30.936	0.9689	30.758	30.283	31.252	-0.17818					55	23	4	0	0	0	0.56067	1	2014	2014		79.939	8.0618	1	3657800			61664	6188	43365	43428	66845	66845					0.04618955557270965
QDLLNPNLL	9	Unmodified	_QDLLNPNLL_					0	0	0		LYZL6|p.M123*|1|0.21|ENSG00000275722|chr17:35936766-35936766|C/-|frameshift_variant;ENSG00000275722|ENST00000615905|LYZL6	LYZL6|p.M123*|1|0.21|ENSG00000275722|chr17:35936766-35936766|C/-|frameshift_variant	LYZL6|p.M123*|1|0.21|ENSG00000275722|chr17:35936766-35936766|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.8323974609375	2	520.292756	1038.57096	-0.58672	-0.00030527	-1.815	-0.00094432	-2.4017	-0.0012496	520.291865081951	20.929	0.37946	20.839	20.63	21.01	-0.090092					16	7	3	0	0	0	0.02435	1	595	595		42.396	0	1	90068			61665	11043	43366	43429	66846	66846					0.053217256147036096
QDLLNRILS	9	Unmodified	_QDLLNRILS_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4;REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	REV__ENST00000596338.5_1_19:49685858-49692185:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3119506835938	2	536.31148	1070.60841	-0.33612	-0.00018026	0.72478	0.00038871	0.38866	0.00020844	536.3118872543531	59.151	1.0621	59.237	58.666	59.728	0.085682					75	25	4	0	0	0	0.247	1	6651	6651		82.75	2.2959	1	10184000	+		61666	23122;35792	43367	43430	66847	66847					0.07592816880332975
QDLLSFLQI	9	Unmodified	_QDLLSFLQI_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8018798828125	2	538.802957	1075.59136	-0.5829	-0.00031407	0.091144	4.9108E-05	-0.49176	-0.00026496	538.8025400855325	88.121	0.42842	87.951	87.703	88.131	-0.17054					17	10	2	0	0	0	0.15366	1	10696	10696		98.629	0	1	394780			61667	10198	43368	43431	66848	66848					0.05658896274530889
QDLLVWEAT	9	Unmodified	_QDLLVWEAT_					0	0	0			REV__ENSG00000244476|ENST00000472091|ERVFRD-1	REV__ENSG00000244476|ENST00000472091|ERVFRD-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7428588867188	2	537.776939	1073.53933	-1.4887	-0.0008006	3.2619	0.0017542	1.7732	0.00095356	537.7786093255278	61.101	0.67822	60.848	60.584	61.262	-0.25373					23	16	2	0	0	0	0.024367	1	6858	6858		44.377	8.0595	1	561410	+		61668	28999	43369	43432	66849	66849					0.005497328607589225
QDLQQKVVY	9	Unmodified	_QDLQQKVVY_					0	0	0		ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF;nc|ENSG00000129226|P34810-2|CD68;nc|ENSG00000129226|P34810-3|CD68	ENSG00000129226|ENST00000250092|CD68	ENSG00000129226|ENST00000250092|CD68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.816650390625	2	560.803488	1119.59242	0.39618	0.00022218	2.9667	0.0016638	3.3629	0.0018859	560.8049894477673	82.233	0.81805	82.012	81.616	82.434	-0.22015					36	18	3	0	0	0	0.024495	1	9904	9904		26.693	13.239	1	328430			61669	4337	43370	43433	66850	66850					0.03741110643431966
QDLRFARVP	9	Unmodified	_QDLRFARVP_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENST00000584336.1_1_17:37686825-37687566:+|nuORF	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.3011474609375	2	551.311815	1100.60908	-0.8135	-0.00044849	0.52202	0.0002878	-0.29148	-0.0001607	551.3119190823796	54.561	0.61771	54.561	54.214	54.831	0					28	17	3	0	0	0	0.024477	1	5914	5914		44.117	0	1	292500			61670	7665	43371	43434	66851	66851					0.06279656320020877
QDLRLPDD	8	Unmodified	_QDLRLPDD_					0	0	0			REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	REV__TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3114929199219	2	486.243264	970.471974	-0.89862	-0.00043695	1.569	0.00076292	0.6704	0.00032598	486.2441784853697	40.646	0.33685	40.669	40.494	40.83	0.023003					14	9	2	0	0	0	0.027866	1	3517	3517		25.574	8.2091	1	103900	+		61671	20360	43372	43435	66852	66852					-0.014442973502127643
QDLSVIVII	9	Unmodified	_QDLSVIVII_					0	0	0			REV__ENSG00000279000|ENST00000641238|OR10A6	REV__ENSG00000279000|ENST00000641238|OR10A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2919006347656	2	500.307875	998.601197	-0.50124	-0.00025077	0.55779	0.00027907	0.05655	2.8292E-05	500.30786191597775	56.274	1.0841	56.118	55.704	56.788	-0.15601					59	29	3	0	0	0	0.024405	1	6176	6176		44.117	3.5442	1	1640600	+		61672	29225	43373	43436	66853	66853					0.10184084279887884
QDLTIVAII	9	Unmodified	_QDLTIVAII_					0	0	0			REV__ENSG00000189181|ENST00000342623|OR14I1	REV__ENSG00000189181|ENST00000342623|OR14I1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7791442871094	2	493.30005	984.585547	-0.98906	-0.0004879	-1.4353	-0.00070805	-2.4244	-0.001196	493.29901222684185	57.596	0.35467	57.418	57.281	57.636	-0.17775					19	8	3	0	0	0	0.024344	1	6284	6284		23.523	0	1	528180	+		61673	28105	43374	43437	66854	66854					0.09263797762855575
QDLTRDRTS	9	Unmodified	_QDLTRDRTS_					0	0	0			REV__nc|ENSG00000197548|O95352-3|ATG7	REV__nc|ENSG00000197548|O95352-3|ATG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2924194335938	2	546.275626	1090.5367	-1.4568	-0.0007958	-2.4429	-0.0013345	-3.8997	-0.0021303	546.2740940589196	35.004	0.87483	34.982	34.551	35.426	-0.021763					43	22	3	0	0	0	0.024447	1	2605	2605		32.812	0.85756	1	298630	+		61674	28315	43375	43438	66855	66855					-0.004947225441810588
QDLVFMLFK	9	Unmodified	_QDLVFMLFK_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;nc|ENSG00000147255|Q8N6C5-3|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	570.2896728515625	2	570.809728	1139.6049	4.178	0.0023849	1.5548	0.00088751	5.7328	0.0032724	570.8108285252117	17.867	0.30803	17.928	17.786	18.094	0.06036					12	6	3	0	0	0	0.024541	1	193	193		10.265	7.5468	1	21482			61675	5952	43376	43439	66856	66856					0.0406843078210386
QDLVFMLFK	9	Unmodified	_QDLVFMLFK_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;nc|ENSG00000147255|Q8N6C5-3|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	570.809728	1139.6049	2.7572	0.0015738	3.5012	0.0019985	6.2584	0.0035724	570.8116523366378	17.702	0.29613	17.702	17.548	17.844	0	-0.1	-0.0010876	NaN	5.9211	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21409			61676	5952	43376	43439							0.0406843078210386
QDLVFMLFK	9	Unmodified	_QDLVFMLFK_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;nc|ENSG00000147255|Q8N6C5-3|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	570.809728	1139.6049	0.3046	0.00017387	6.0051	0.0034278	6.3097	0.0036016	570.8131191862835	17.843	0.2472	17.701	17.552	17.799	-0.14278	-0.1014	0.0017708	NaN	5.9211	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9881.8			61677	5952	43376	43439							0.0406843078210386
QDLVFMLFK	9	Unmodified	_QDLVFMLFK_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;nc|ENSG00000147255|Q8N6C5-3|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	570.809728	1139.6049	1.1032	0.00062971	5.2826	0.0030153	6.3858	0.0036451	570.8126437891815	18.036	0.34641	17.879	17.655	18.002	-0.15637	0.077195	0.00094598	NaN	5.9211	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34853			61678	5952	43376	43439							0.0406843078210386
QDLVFMLFK	9	Unmodified	_QDLVFMLFK_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;nc|ENSG00000147255|Q8N6C5-3|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	570.809728	1139.6049	3.773	0.0021537	3.0035	0.0017144	6.7765	0.0038681	570.8110685726871	18.043	0.44675	17.8	17.577	18.024	-0.24256	-0.0015929	-0.0016559	NaN	5.9211	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31582			61679	5952	43376	43439							0.0406843078210386
QDLWKNIL	8	Unmodified	_QDLWKNIL_					0	0	0		ENST00000263849.8_1_8:79578301-79590832:+|nuORF	ENST00000263849.8_1_8:79578301-79590832:+|nuORF	ENST00000263849.8_1_8:79578301-79590832:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.80224609375	2	515.290017	1028.56548	0.21591	0.00011126	-1.3219	-0.00068114	-1.1059	-0.00056988	515.2889716220496	69.049	0.33629	68.756	68.634	68.97	-0.29267					13	8	2	0	0	0	0.027866	1	8295	8295		39.253	1.4413	1	196810			61680	11542	43377	43440	66857	66857					0.05234046822897653
QDMAIYAPL	9	Unmodified	_QDMAIYAPL_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.84442138671875	2	511.254785	1020.49502	0.019769	1.0107E-05	1.1022	0.0005635	1.122	0.00057361	511.2558790548024	76.586	0.3702	76.598	76.405	76.775	0.011635					14	8	2	0	0	0	0.024457	1	9384	9384		29.15	0	1	98874	+		61681	24886	43378	43441	66858	66858					-0.01440994557083286
QDMDFTDLG	9	Unmodified	_QDMDFTDLG_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7802734375	2	521.213314	1040.41208	-0.098756	-5.1473E-05	0.018684	9.7383E-06	-0.080072	-4.1735E-05	521.2131386300349	51.76	0.80789	51.641	51.357	52.165	-0.11875					26	21	2	0	0	0	0.02435	1	5420	5420		26.693	0	1	149950			61682	4828	43379	43442	66859	66859					-0.1065135607573211
QDMGLENGF	9	Unmodified	_QDMGLENGF_					0	0	0		MPHOSPH8|p.H308N|1|0.44|ENSG00000196199|chr13:19646995-19646995|C/A|missense_variant	MPHOSPH8|p.H308N|1|0.44|ENSG00000196199|chr13:19646995-19646995|C/A|missense_variant	MPHOSPH8|p.H308N|1|0.44|ENSG00000196199|chr13:19646995-19646995|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.71392822265625	2	505.716024	1009.4175	-0.16385	-8.2861E-05	-3.1186	-0.0015771	-3.2825	-0.00166	505.7142495519542	31.492	4.3224	31.251	29.658	33.98	-0.24109					222	105	3	0	0	0	0.70156	1	2114	2114		45.972	5.1941	1	1926200			61683	17991	43380	43443	66860	66860					-0.0868363249325057
QDMKWKNK	8	Unmodified	_QDMKWKNK_					0	0	0		ENSG00000006025|ENST00000007414|OSBPL7;ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF	ENSG00000006025|ENST00000007414|OSBPL7	ENSG00000006025|ENST00000007414|OSBPL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2587890625	2	539.279126	1076.5437	-0.89564	-0.000483	1.003	0.00054091	0.10739	5.7913E-05	539.7819463741008	76.093	0.70977	76.093	75.806	76.516	0					50	17	4	0	0	0	0.027866	1	9421	9421		44.117	0	1	614760			61684	781	43381	43444	66861	66861					0.008489188026715055
QDMLTLQII	9	Unmodified	_QDMLTLQII_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.796630859375	2	537.796817	1073.57908	-0.45908	-0.00024689	0.61389	0.00033015	0.15481	8.3254E-05	537.7970207667825	77.615	3.0284	77.615	76.799	79.828	0					167	72	3	0	0	0	0.45795	1	9611	9611		62.107	1.8135	1	2444300			61685	3892	43382	43445	66862	66862					0.045235365398411886
QDNALIEV	8	Unmodified	_QDNALIEV_					0	0	0			REV__nc|ENSG00000225217|P48741|HSPA7	REV__nc|ENSG00000225217|P48741|HSPA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2640686035156	2	451.234907	900.455261	0.62572	0.00028235	-0.66533	-0.00030022	-0.039603	-1.787E-05	451.23464237865204	61.726	0.31355	61.499	61.298	61.611	-0.22663					12	7	2	0	0	0	0.027866	1	7093	7093		38.806	0	1	69341	+		61686	26738	43383	43446	66863	66863					0.001052017638471625
QDNALIEV	8	Unmodified	_QDNALIEV_					0	0	0			REV__nc|ENSG00000225217|P48741|HSPA7	REV__nc|ENSG00000225217|P48741|HSPA7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.234907	900.455261	0.36709	0.00016564	-0.49248	-0.00022222	-0.12539	-5.658E-05	451.2346675435887	61.499	0.46338	61.499	61.295	61.758	0	0.00026736	8.1756E-05	NaN	38.806	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98719	+		61687	26738	43383	43446							0.001052017638471625
QDNAMQIKL	9	Oxidation (M)	_QDNAM(Oxidation (M))QIKL_		QDNAM(1)QIKL		QDNAM(120)QIKL	0	0	1			REV__ENST00000398117.1_1_18:60793396-60793765:-|nuORF	REV__ENST00000398117.1_1_18:60793396-60793765:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2948608398438	2	538.773874	1075.53319	-0.79148	-0.00042643	3.6623	0.0019732	2.8708	0.0015467	538.7758480857642	87.147	0.75601	87.01	86.746	87.502	-0.13734					34	17	3	0	0	0	0.01887	1	10645	10645		124.08	30.937	1	333470	+		61688	31795	43384	43447	66864	66864		886			-0.0015510864241150557
QDNFHVEVK	9	Unmodified	_QDNFHVEVK_					0	0	0			REV__ENSG00000154114|ENST00000683345|TBCEL	REV__ENSG00000154114|ENST00000683345|TBCEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2438354492188	2	558.277638	1114.54072	-0.3209	-0.00017915	0.2646	0.00014772	-0.056293	-3.1427E-05	558.277603040546	69.545	1.0349	69.322	68.894	69.929	-0.22245					34	24	2	0	0	0	0.024447	1	8108	8108		25.574	0	1	155310	+		61689	24933	43385	43448	66865	66865					-0.01196633050494711
QDNLDLANI	9	Unmodified	_QDNLDLANI_					0	0	0		ENST00000579008.1_1_18:8412788-8413139:+|nuORF	ENST00000579008.1_1_18:8412788-8413139:+|nuORF	ENST00000579008.1_1_18:8412788-8413139:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7695007324219	2	508.256371	1014.49819	-1.2142	-0.00061712	-2.9049	-0.0014765	-4.1191	-0.0020936	508.25590400591784	36.127	0.17601	36.084	36.032	36.208	-0.042454					6	4	2	0	0	0	0.024344	1	2845	2845		64.207	9.4426	1	81042			61690	17137	43386	43449	66866	66866					-0.008480281787115018
QDPFWKKI	8	Unmodified	_QDPFWKKI_					0	0	0		ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7999267578125	2	531.292559	1060.57057	-0.26978	-0.00014333	-3.1448	-0.0016708	-3.4146	-0.0018141	531.2900553168806	97.54	0.40819	97.379	97.129	97.537	-0.16106					13	8	2	0	0	0	0.027866	1	12058	12058		29.15	0	1	54255			61691	11075	43387	43450	66867	66867					0.042703506855104933
QDPGDWVAI	9	Unmodified	_QDPGDWVAI_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7870788574219	2	500.740357	999.46616	-0.57488	-0.00028787	-3.0613	-0.0015329	-3.6362	-0.0018208	500.73889634018343	60.505	0.18771	60.291	60.196	60.384	-0.21339					5	4	2	0	0	0	0.024477	1	6922	6922		35.618	10.168	1	113340	+		61692	27541	43388	43451	66868	66868					-0.03359395861855319
QDPGEDGPR	9	Unmodified	_QDPGEDGPR_					0	0	0			REV__ENSG00000010319|ENST00000231721|SEMA3G	REV__ENSG00000010319|ENST00000231721|SEMA3G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2557678222656	2	485.71487	969.415188	-0.49779	-0.00024179	0.083565	4.0589E-05	-0.41423	-0.0002012	485.7147266530663	52.453	2.5624	52.545	51.857	54.42	0.091938					100	69	2	0	0	0	0.024344	1	5659	5659		23.523	0	1	406450	+		61693	19904	43389	43452	66869	66869					-0.07074344906720853
QDPHFNLR	8	Unmodified	_QDPHFNLR_					0	0	0			REV__ENSG00000136270|ENST00000258770|TBRG4	REV__ENSG00000136270|ENST00000258770|TBRG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.78515625	2	513.759415	1025.50428	-0.89645	-0.00046056	-0.42117	-0.00021638	-1.3176	-0.00067694	513.7615750252073	73.289	0.14452	73.289	73.182	73.327	0					5	3	2	0	0	0	0.027866	1	8939	8939		21.96	0	1	55502	+		61694	23642	43390	43453	66870	66870					-0.0074546515654674295
QDPPKAFVI	9	Unmodified	_QDPPKAFVI_					0	0	0			REV__nc|ENSG00000271793|O60506-4|SYNCRIP	REV__nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7680969238281	2	507.784567	1013.55458	0.18617	9.4533E-05	0.46039	0.00023378	0.64655	0.00032831	508.2869491756446	59.386	0.51575	59.472	59.063	59.579	0.085686					18	13	2	0	0	0	0.023817	1	6650	6650		60.972	8.6728	1	302500	+		61695	37198	43391	43454	66871	66871					0.04834644448601466
QDPQLSFTT	9	Unmodified	_QDPQLSFTT_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7505493164062	2	518.750921	1035.48729	-0.76944	-0.00039915	-0.4549	-0.00023598	-1.2243	-0.00063512	518.7506195621348	27.243	1.3243	27.243	26.867	28.191	0					77	34	4	0	0	0	0.62163	1	1483	1483		51.335	7.2187	1	3195700	+		61696	22027	43392	43455	66872	66872					-0.029034305530103666
QDPQRKALL	9	Unmodified	_QDPQRKALL_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000285975|A6NNJ1|FAM90A9;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000285937|A6NJQ4|FAM90A8;ENSG00000229924|ENST00000512047|FAM90A26;ENSG00000171847|ENST00000538603|FAM90A1;nc|ENSG00000205879|Q658T7|FAM90A2P;nc|ENSG00000205879|Q658T7-2|FAM90A2P	nc|ENSG00000233295|A6NIJ5|FAM90A20;ENSG00000229924|ENST00000512047|FAM90A26	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.7770385742188	2	534.811648	1067.60874	-0.59559	-0.00031853	-0.6058	-0.00032399	-1.2014	-0.00064251	534.8114889871237	46.522	1.0457	46.574	45.864	46.91	0.051395					20	11	2	0	0	0	0.024374	1	4504	4504		13.454	7.5329	1	565410			61697	18749;8203	43393	43456	66873	66873					0.07764236600178265
QDPRSVDL	8	Unmodified	_QDPRSVDL_					0	0	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2869567871094	2	465.237981	928.461409	-1.3631	-0.00063417	1.2592	0.00058584	-0.10389	-4.8336E-05	465.23920455627336	75.383	0.32624	75.383	75.155	75.481	0					12	8	2	0	0	0	0.027866	1	9262	9262		37.159	3.6435	1	143920			61698	7862	43394	43457	66874	66874					-0.005682800046201919
QDPRVAPMSNL	11	Unmodified	_QDPRVAPMSNL_					0	0	0		nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENST00000448213.2_1_1:81967523-81968357:+|nuORF;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B;ENST00000569680.1_1_15:74833658-74865607:+|nuORF	nc|ENSG00000179361|Q8IVW6-3|ARID3B	nc|ENSG00000179361|Q8IVW6-3|ARID3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.886474609375	3	409.876529	1226.60776	0.11879	4.8689E-05	-3.1793	-0.0013031	-3.0605	-0.0012544	409.87488557691654	34.528	0.39529	34.578	34.367	34.762	0.050255					14	9	2	0	0	0	0.024804	1	2524	2524		49.466	0	1	124180			61699	18554	43395	43458	66875	66875					0.003516541689805308
QDPRVPQRNRL	11	Unmodified	_QDPRVPQRNRL_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2684631347656	3	460.260253	1377.75893	-0.3625	-0.00016684	-2.0592	-0.00094777	-2.4217	-0.0011146	460.2592089962129	39.765	0.73698	39.542	39.343	40.079	-0.22311					38	18	3	0	0	0	0.024757	1	3456	3456		20.315	0	1	170230	+		61700	20465	43396	43459	66876	66876					0.08515976591843355
QDPSHFLL	8	Unmodified	_QDPSHFLL_					0	0	0		ENST00000463447.5_1_17:39673213-39674704:-|nuORF;chr17:41517011-41518330|140|11.54|0.35|5.03|-|2|None,KRT15|2	ENST00000463447.5_1_17:39673213-39674704:-|nuORF	ENST00000463447.5_1_17:39673213-39674704:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2900695800781	2	478.745442	955.476331	0.29248	0.00014002	-0.37157	-0.00017789	-0.07909	-3.7864E-05	478.7452176945343	52.698	0.35814	52.698	52.431	52.789	0					12	8	2	0	0	0	0.027866	1	5668	5668		33.516	4.366	1	53910			61701	14733	43397	43460	66877	66877					-0.003187881366102374
QDPTIMPAR	9	Unmodified	_QDPTIMPAR_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2979125976562	2	514.763309	1027.51206	-0.62847	-0.00032351	-2.5936	-0.0013351	-3.2221	-0.0016586	514.7615520450609	52.937	0.29853	52.937	52.75	53.049	0					12	7	2	0	0	0	0.024381	1	5678	5678		37.159	1.5408	1	149270	+		61702	23162	43398	43461	66878	66878					-0.0005907395127451309
QDPTIMPAR	9	Unmodified	_QDPTIMPAR_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.763309	1027.51206	-0.0226	-1.1634E-05	-3.1789	-0.0016364	-3.2015	-0.001648	514.7614046363224	53.563	0.4729	53.304	53.039	53.512	-0.25838	0.24144	-0.00024079	NaN	29.15	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649100	+		61703	23162	43398	43461							-0.0005907395127451309
QDPVIANNN	9	Unmodified	_QDPVIANNN_					0	0	0		MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|23|2|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|23|2|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|23|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7816162109375	2	492.740888	983.467223	-0.4693	-0.00023124	0.59374	0.00029256	0.12444	6.1315E-05	492.7407679942211	32.937	0.64121	32.937	32.494	33.135	0					21	16	2	0	0	0	0.024292	1	2331	2331		49.442	0	1	133270			61704	17982	43399	43462	66879	66879					-0.025171814929535685
QDPVIANNN	9	Unmodified	_QDPVIANNN_					0	0	0		MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|23|2|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|23|2|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|23|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7813415527344	2	492.740888	983.467223	-0.029906	-1.4736E-05	-0.59954	-0.00029542	-0.62945	-0.00031015	492.7405896086005	32.683	0.42264	32.746	32.54	32.962	0.062885					16	10	2	0	0	0	0.024405	1	2232	2232		35.618	1.4457	1	137220			61705	17982	43399	43462	66880	66880					-0.025171814929535685
QDPVMIALT	9	Unmodified	_QDPVMIALT_					0	0	0		MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|6|1|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|6|1|sense	MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|6|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.26373291015625	2	494.26261	986.510668	0.14111	6.9745E-05	-0.7961	-0.00039348	-0.65499	-0.00032374	494.2621352468061	71.491	0.56324	71.501	71.279	71.842	0.010735					21	14	2	0	0	0	0.024511	1	8567	8567		19.104	0	1	445640			61706	17969	43400	43463	66881	66881					0.01687291959956383
QDQCYVIQ	8	Unmodified	_QDQCYVIQ_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1	REV__ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7971496582031	2	498.726392	995.438231	0.55132	0.00027496	2.155	0.0010748	2.7063	0.0013497	498.72756016356254	58.54	0.6636	58.631	58.333	58.997	0.091217					40	17	3	0	0	0	0.027866	1	6531	6531		37.159	19.691	1	784650	+		61707	25139	43401	43464	66882	66882					-0.05967042113593379
QDQDLVVR	8	Unmodified	_QDQDLVVR_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2966613769531	2	486.759081	971.503609	-0.64422	-0.00031358	-0.85993	-0.00041858	-1.5042	-0.00073216	486.7586419824088	32.552	0.6721	32.564	32.376	33.048	0.011799					29	17	2	0	0	0	0.027866	1	2273	2273		23.042	0	1	269100			61708	1812	43402	43465	66883	66883					0.016716954037519827
QDQDPPGSDP	10	Unmodified	_QDQDPPGSDP_					0	0	0			REV__ENST00000297494.7_1_7:150711253-150711529:+|nuORF	REV__ENST00000297494.7_1_7:150711253-150711529:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2867431640625	2	528.217443	1054.42033	-0.3503	-0.00018504	3.95	0.0020864	3.5997	0.0019014	528.2194938159537	30.825	0.58588	30.9	30.586	31.171	0.074314					26	13	3	0	0	0	0.03519	1	1968	1968		36.447	17.343	1	186320	+		61709	30013	43403	43466	66884	66884					-0.10470085834754173
QDQEKYLYR	9	Unmodified	_QDQEKYLYR_					0	0	0		PFKFB2|p.R351Q|1|0.17|ENSG00000123836|chr1:207069488-207069488|G/A|missense_variant	PFKFB2|p.R351Q|1|0.17|ENSG00000123836|chr1:207069488-207069488|G/A|missense_variant	PFKFB2|p.R351Q|1|0.17|ENSG00000123836|chr1:207069488-207069488|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.8985290527344	3	414.875293	1241.60405	0.31839	0.00013209	-2.2404	-0.00092951	-1.9221	-0.00079742	415.2077312553303	25.091	0.46506	25.171	24.871	25.336	0.08009					12	10	2	0	0	0	0.024473	1	1090	1090		27.047	1.9213	1	23911			61710	18960	43404	43467	66885	66885					-0.007086923332508377
QDQEQRILKF	10	Unmodified	_QDQEQRILKF_					0	0	0		ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF	ENSG00000160710|ENST00000368474|ADAR	ENSG00000160710|ENST00000368474|ADAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.73004150390625	3	435.570093	1303.68845	-1.3504	-0.00058818	3.2535	0.0014171	1.9031	0.00082895	435.57130156805016	38.367	0.16522	38.394	38.264	38.429	0.027275					6	4	2	0	0	0	0.03519	1	3155	3155		19.263	1.4295	1	48177			61711	6833	43405	43468	66886	66886					0.048752584835028756
QDQGMFLML	9	Unmodified	_QDQGMFLML_					0	0	0		OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant;ENSG00000238243|ENST00000360358|OR2W3	OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2930908203125	2	541.754095	1081.49364	-0.73878	-0.00040024	-1.9313	-0.0010463	-2.6701	-0.0014465	541.7520459611271	39.196	1.4141	39.196	38.319	39.733	0					70	38	3	0	0	0	0.024292	1	3412	3412		58.782	11.125	1	161700			61712	10753	43406	43469	66887	66887					-0.043849519174955276
QDQIGMLEV	9	Unmodified	_QDQIGMLEV_					0	0	0			REV__JAKMIP1|p.V277I|1|0.11|ENSG00000152969|chr4:6085425-6085425|C/T|missense_variant	REV__JAKMIP1|p.V277I|1|0.11|ENSG00000152969|chr4:6085425-6085425|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8265380859375	2	516.755149	1031.49575	-0.10597	-5.4762E-05	-3.0407	-0.0015713	-3.1467	-0.0016261	517.2550286176837	57.26	0.50806	57.035	56.738	57.246	-0.2248					17	13	2	0	0	0	0.024319	1	6209	6209		47.657	5.2612	1	232220	+		61713	36166	43407	43470	66888	66888					-0.018741999080248206
QDQILTNLS	9	Unmodified	_QDQILTNLS_					0	0	0		ENST00000472348.1_1_7:100204024-100205723:+|nuORF;ENSG00000106333|ENST00000223061|PCOLCE	ENST00000472348.1_1_7:100204024-100205723:+|nuORF	ENST00000472348.1_1_7:100204024-100205723:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2655639648438	2	516.272021	1030.52949	0.34921	0.00018029	-1.5072	-0.00077813	-1.158	-0.00059784	516.271848025521	57.37	0.49824	57.195	56.999	57.497	-0.1749					18	12	2	0	0	0	0.023837	1	6410	6410		45.972	7.1661	1	190350			61714	2778	43408	43471	66889	66889					0.015445448553691676
QDQLHHKL	8	Unmodified	_QDQLHHKL_					0	0	0			REV__chr1:206897615-206897731|410|31.78|0.31|6.69|+|1|IL24,IL24|1	REV__chr1:206897615-206897731|410|31.78|0.31|6.69|+|1|IL24,IL24|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.76971435546875	2	509.775065	1017.53558	-0.93272	-0.00047548	3.0449	0.0015522	2.1122	0.0010767	509.7765592847901	83.565	1.2066	83.565	82.965	84.171	0					48	27	3	0	0	0	0.027866	1	10521	10521		44.117	7.0883	1	289200	+		61715	19320	43409	43472	66890	66890					0.027511078775546594
QDQPEWQED	9	Unmodified	_QDQPEWQED_					0	0	0		ENST00000307271.3_1_7:150171706-150174432:+|nuORF	ENST00000307271.3_1_7:150171706-150174432:+|nuORF	ENST00000307271.3_1_7:150171706-150174432:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.7721557617188	2	587.736	1173.45745	-0.91437	-0.00053741	3.6593	0.0021507	2.7449	0.0016133	587.7380616152734	32.58	1.3575	32.422	31.489	32.847	-0.15772					43	32	2	0	0	0	0.024495	1	2268	2268		34.173	1.3601	1	128640			61716	12009	43410	43473	66891	66891					-0.1223441428901424
QDQRQLGGP	9	Unmodified	_QDQRQLGGP_					0	0	0			REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.8027648925781	2	499.75433	997.494107	0.16409	8.2005E-05	-3.5246	-0.0017614	-3.3605	-0.0016794	500.25395785648976	52.876	0.5195	52.972	52.641	53.161	0.095669					15	13	2	0	0	0	0.023817	1	5586	5586		42.396	16.822	1	69799	+		61717	29776	43411	43474	66892	66892					-0.004740728817523632
QDQYLKLI	8	Unmodified	_QDQYLKLI_					0	0	0			REV__ENSG00000156049|ENST00000341700|GNA14	REV__ENSG00000156049|ENST00000341700|GNA14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.76934814453125	2	510.78985	1019.56515	-0.44575	-0.00022768	1.0649	0.00054395	0.61918	0.00031627	510.7897618857389	69.037	0.40659	69.037	68.938	69.344	0					15	10	2	0	0	0	0.027866	1	8293	8293		44.117	0	1	341370	+		61718	25047	43412	43475	66893	66893					0.056146271030456774
QDRDGALSP	9	Unmodified	_QDRDGALSP_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2671813964844	2	479.733063	957.451573	0.56667	0.00027185	-1.0214	-0.00049	-0.45473	-0.00021815	479.73259135593224	23.926	0.48685	23.71	23.467	23.954	-0.2151					15	10	2	0	0	0	0.024477	1	992	992		14.865	6.1712	1	101160			61719	5457	43413	43476	66894	66894					-0.028854680099925645
QDRDGALSP	9	Unmodified	_QDRDGALSP_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.733063	957.451573	-0.29245	-0.0001403	0.18416	8.8347E-05	-0.10829	-5.195E-05	479.73310358697825	23.845	0.38799	23.665	23.436	23.824	-0.17989	-0.022915	0.00050773	NaN	14.865	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123610			61720	5457	43413	43476							-0.028854680099925645
QDRDKPAQI	9	Unmodified	_QDRDKPAQI_					0	0	0		ENSG00000115484|ENST00000394440|CCT4;nc|ENSG00000115484|P50991-2|CCT4	ENSG00000115484|ENST00000394440|CCT4	ENSG00000115484|ENST00000394440|CCT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.8294067382812	2	535.783087	1069.55162	-1.2747	-0.00068295	-1.8863	-0.0010106	-3.161	-0.0016936	535.78219983613	34.71	0.54268	34.76	34.404	34.947	0.050251					14	13	2	0	0	0	0.024523	1	2543	2543		29.15	0	1	69328			61721	3453	43414	43477	66895	66895					0.01962769323813518
QDRFPTVL	8	Unmodified	_QDRFPTVL_					0	0	0		ENSG00000099974|ENST00000215770|DDTL	ENSG00000099974|ENST00000215770|DDTL	ENSG00000099974|ENST00000215770|DDTL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.26806640625	2	488.266542	974.51853	-0.80905	-0.00039503	4.0532	0.001979	3.2441	0.001584	488.26869525931835	43.619	1.4847	43.474	42.841	44.326	-0.14471					126	41	5	0	0	0	0.87148	1	4107	4107		53.351	2.016	1	12505000			61722	2108	43415	43478	66896	66896					0.030251872717599326
QDRFRFNEI	9	Unmodified	_QDRFRFNEI_					0	0	0		ENSG00000118231|ENST00000264376|CRYGD	ENSG00000118231|ENST00000264376|CRYGD	ENSG00000118231|ENST00000264376|CRYGD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2470397949219	3	408.875516	1223.60472	0.017	6.9509E-06	-2.9143	-0.0011916	-2.8973	-0.0011846	408.8745788883371	37.954	0.10436	37.982	37.918	38.023	0.027275					4	2	2	0	0	0	0.024307	1	3080	3080		46.457	10.01	1	33908			61723	3672	43416	43479	66897	66897					0.001861471064557918
QDRIIANLNY	10	Unmodified	_QDRIIANLNY_					0	0	0			REV__BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	REV__BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.578857421875	3	407.219172	1218.63569	0.73366	0.00029876	-1.4651	-0.0005966	-0.7314	-0.00029784	407.2181464552461	34.313	0.42914	34.313	34.05	34.479	0					14	10	2	0	0	0	0.03519	1	2570	2570		18.531	1.063	1	58299	+		61724	19206	43417	43480	66898	66898					0.03511300420746011
QDRKRKGP	8	Unmodified	_QDRKRKGP_					0	0	0			REV__nc|ENSG00000137337|Q14676-3|MDC1	REV__nc|ENSG00000137337|Q14676-3|MDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2668762207031	2	492.788507	983.562461	-0.73653	-0.00036295	-3.1399	-0.0015473	-3.8764	-0.0019103	492.78418785126	28.547	0.75771	28.547	28.274	29.032	0					55	17	5	0	0	0	0.027866	1	1649	1649		47.916	3.7988	1	472900	+		61725	23748	43418	43481	66899	66899					0.07002216488751856
QDRLTKLT	8	Unmodified	_QDRLTKLT_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2031555175781	2	487.785099	973.555644	-0.44785	-0.00021846	-0.32871	-0.00016034	-0.77656	-0.00037879	487.7853162030355	39.666	0.69014	39.51	39.236	39.926	-0.15591					58	17	5	0	0	0	0.027866	1	3373	3373		13.454	0	1	695780	+		61726	21012	43419	43482	66900	66900					0.06780858817501212
QDRLTKLT	8	Unmodified	_QDRLTKLT_					0	0	0			REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2033996582031	2	487.785099	973.555644	-0.24555	-0.00011978	-0.42887	-0.0002092	-0.67442	-0.00032897	487.78538386825716	39.829	0.89334	39.604	39.184	40.078	-0.225					58	22	4	0	0	0	0.027866	1	3373	3373		14.865	0	1	683000	+		61727	21012	43419	43482	66901	66901					0.06780858817501212
QDRPHLTV	8	Unmodified	_QDRPHLTV_					0	0	0		MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant	MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant	MBD1|p.W390Sfs*33|1|0.39|ENSG00000141644|chr18:50273843-50273844|-/AC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2771301269531	2	483.261791	964.509028	0.0006304	3.0465E-07	1.2265	0.00059273	1.2272	0.00059304	483.26174514363316	24.436	0.54689	24.514	24.184	24.731	0.078344					34	11	5	0	0	0	0.027866	1	1042	1042		16.473	0	1	255260			61728	17955	43420	43483	66902	66902					0.02535418986235527
QDRRESLP	8	Unmodified	_QDRRESLP_					0	0	0		ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	ENSG00000171992|ENST00000307662|SYNPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29327392578125	2	500.762155	999.509757	0.00066122	3.3111E-07	3.8633	0.0019346	3.8639	0.0019349	500.7638651756398	50.293	0.78307	50.013	49.621	50.404	-0.27977					44	20	3	0	0	0	0.027866	1	5145	5145		24.203	0	1	1003300			61729	8229	43421	43484	66903	66903					0.009982136352846283
QDRRQEQSR	9	Unmodified	_QDRRQEQSR_					0	0	0			REV__TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	REV__TCHH|p.R1400Afs*20|1|0.15|ENSG00000159450|chr1:152109007-152109019|GCTCCTGGCAGCG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.58416748046875	3	401.537675	1201.59119	0.62185	0.0002497	-4.14	-0.0016624	-3.5181	-0.0014127	401.5350724460911	25.125	0.38561	24.953	24.732	25.118	-0.17151					10	8	2	0	0	0	0.024283	1	1147	1147		40.058	20.028	1	28589	+		61730	25258	43422	43485	66904	66904					-0.0015371067277101247
QDRSLRVIE	9	Unmodified	_QDRSLRVIE_					0	0	0			REV__nc|ENSG00000110075|Q5H9R7-3|PPP6R3	REV__nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.2771606445312	2	558.312012	1114.60947	0.24139	0.00013477	3.0298	0.0016915	3.2711	0.0018263	558.3134311959909	68.659	0.44181	68.678	68.462	68.904	0.018913					19	11	2	0	0	0	0.024427	1	8143	8143		34.173	1.3601	1	234690	+		61731	21836	43423	43486	66905	66905					0.05675031249234053
QDRTFIPWTKW	11	Unmodified	_QDRTFIPWTKW_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7851867675781	3	493.257738	1476.75138	-0.51536	-0.00025421	-2.905	-0.0014329	-3.4204	-0.0016871	493.25656545297153	25.488	0.85891	25.488	24.964	25.823	0					29	20	2	0	0	0	0.02476	1	1217	1217		45.908	19.158	1	62681	+		61732	20873	43424	43487	66906	66906					0.03207824271521531
QDRTFIPWTKW	11	Unmodified	_QDRTFIPWTKW_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7850646972656	3	493.257738	1476.75138	-0.77806	-0.00038378	-4.2377	-0.0020903	-5.0158	-0.0024741	493.255578430063	25.375	0.74863	25.34	25.238	25.987	-0.034395					23	17	2	0	0	0	0.02476	1	1221	1221		45.908	37.109	1	53098	+		61733	20873	43424	43487	66907	66907					0.03207824271521531
QDRYRRRYWVL	11	Unmodified	_QDRYRRRYWVL_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.863037109375	4	403.472021	1609.85898	-0.44753	-0.00018057	-1.1165	-0.00045046	-1.564	-0.00063103	403.47184282248696	27.672	0.4188	27.515	27.266	27.685	-0.15664					21	9	3	0	0	0	0.024876	1	1541	1541		1.2319	0	1	42494			61734	1576	43425	43488	66908	66908					0.07844213925636723
QDSEVNELSRG	11	Unmodified	_QDSEVNELSRG_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	617.2860107421875	2	617.288931	1232.56331	-1.296	-0.00080001	-3.7464	-0.0023126	-5.0424	-0.0031126	617.2864647575233	68.684	0.90088	68.422	68.142	69.043	-0.26165					49	21	3	0	0	0	0.79085	1	7956	7956		58.246	3.4699	1	1347400			61735	6682	43426	43489	66909	66909					-0.04367078443533501
QDSEVNELSRG	11	Unmodified	_QDSEVNELSRG_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	617.288931	1232.56331	-0.60195	-0.00037158	-4.121	-0.0025438	-4.723	-0.0029154	617.286460965315	68.356	0.75853	68.356	68.14	68.898	0	-0.060477	0.00063592	NaN	58.246	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250780			61736	6682	43426	43489							-0.04367078443533501
QDSEVNELSRG	11	Unmodified	_QDSEVNELSRG_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	617.288931	1232.56331	0.24807	0.00015313	-5.0279	-0.0031037	-4.7798	-0.0029505	617.2858019233337	68.717	0.61813	68.424	68.171	68.789	-0.29267	0.0071419	-0.00048371	NaN	58.246	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221540			61737	6682	43426	43489							-0.04367078443533501
QDSEVNELSRG	11	Unmodified	_QDSEVNELSRG_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	617.288931	1232.56331	-0.44595	-0.00027528	-4.0127	-0.002477	-4.4586	-0.0027522	617.2863243843063	68.461	0.48811	68.48	68.276	68.764	0.018913	0.063188	0.00076968	NaN	58.246	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301440			61738	6682	43426	43489							-0.04367078443533501
QDSEVNELSRG	11	Unmodified	_QDSEVNELSRG_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	617.288931	1232.56331	0.23424	0.0001446	-5.3753	-0.0033181	-5.1411	-0.0031735	617.2854346526634	68.649	0.72736	68.418	68.116	68.844	-0.23048	0.0013354	-0.00091263	NaN	58.246	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1484600			61739	6682	43426	43489							-0.04367078443533501
QDSIEAARA	9	Unmodified	_QDSIEAARA_					0	0	0		ENSG00000160972|ENST00000435887|PPP1R16A;ENST00000526564.1_1_8:145724415-145725789:+|nuORF	ENSG00000160972|ENST00000435887|PPP1R16A	ENSG00000160972|ENST00000435887|PPP1R16A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7803039550781	2	480.740888	959.467223	1.928	0.00092688	2.1561	0.0010365	4.0841	0.0019634	480.7420074907372	63.904	0.75164	63.904	63.595	64.347	0					41	20	3	0	0	0	0.024405	1	7502	7502		14.865	0	1	1328400			61740	6854	43427	43490	66910	66910					-0.01413181492955573
QDSKRLQH	8	Unmodified	_QDSKRLQH_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7550354003906	2	506.270147	1010.52574	0.73963	0.00037445	-2.4354	-0.001233	-1.6958	-0.00085854	506.2687329546221	18.62	0.54403	18.464	18.099	18.643	-0.15637					22	10	3	0	0	0	0.027866	1	344	344		12.207	0	1	101840			61741	1307	43428	43491	66911	66911					0.020899198721849643
QDSKVIFVE	9	Unmodified	_QDSKVIFVE_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1;ENST00000591089.1_1_18:77211089-77211992:+|nuORF	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.3049926757812	2	532.784764	1063.55498	-1.3484	-0.00071842	0.48908	0.00026058	-0.85935	-0.00045785	532.7850867853975	62.632	0.66503	62.632	62.531	63.196	0					25	16	2	0	0	0	0.024367	1	7364	7364		22.58	0	1	656220			61742	4506	43429	43492	66912	66912					0.025740193778119647
QDSLVILTI	9	Unmodified	_QDSLVILTI_					0	0	0		ENST00000547136.1_1_12:48359585-48360048:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C;ENST00000551305.5_1_12:48359585-48359975:+|nuORF	ENST00000547136.1_1_12:48359585-48360048:+|nuORF	ENST00000547136.1_1_12:48359585-48360048:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.32122802734375	2	501.297507	1000.58046	1.4392	0.00072146	2.9094	0.0014585	4.3485	0.0021799	501.29879882921654	63.322	0.28646	63.376	63.233	63.519	0.054104					11	7	2	0	0	0	0.016885	1	7309	7309		95.815	0	1	64220			61743	4777	43430	43493	66913	66913					0.08019493900224006
QDSLVILTI	9	Unmodified	_QDSLVILTI_					0	0	0		ENST00000547136.1_1_12:48359585-48360048:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C;ENST00000551305.5_1_12:48359585-48359975:+|nuORF	ENST00000547136.1_1_12:48359585-48360048:+|nuORF	ENST00000547136.1_1_12:48359585-48360048:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29638671875	2	501.297507	1000.58046	-0.45769	-0.00022944	0.67786	0.00033981	0.22017	0.00011037	501.29781979408256	103.97	0.42263	103.84	103.66	104.08	-0.12927					16	10	2	0	0	0	0.56934	1	12952	12952		54.776	1.8396	1	141130			61744	4777	43430	43493	66914	66914					0.08019493900224006
QDSPASGLQT	10	Unmodified	_QDSPASGLQT_					0	0	0		nc|ENSG00000065717|Q04725-3|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75848388671875	2	502.238178	1002.4618	1.4441	0.00072527	1.0826	0.00054372	2.5267	0.001269	502.73988596066187	37.08	0.19162	37.08	36.966	37.158	0					7	4	2	0	0	0	0.03519	1	3003	3003		6.6596	0	1	49101			61745	18064	43431	43494	66915	66915					-0.03932905075430426
QDSRSDCNL	9	Unmodified	_QDSRSDCNL_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.792236328125	2	519.219462	1036.42437	-0.39965	-0.00020751	-4.2744	-0.0022193	-4.674	-0.0024269	519.2172585865187	53.97	0.39208	53.822	53.529	53.921	-0.14723					15	10	2	0	0	0	0.024484	1	5852	5852		37.812	18.452	1	146390	+		61746	20261	43432	43495	66916	66916					-0.09238319612677515
QDSRSDCNL	9	Unmodified	_QDSRSDCNL_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.219462	1036.42437	-0.28851	-0.0001498	-3.7321	-0.0019378	-4.0206	-0.0020876	519.2173151185145	53.773	0.32368	53.773	53.618	53.942	0	-0.024692	0.00029075	NaN	30.318	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121210	+		61747	20261	43432	43495							-0.09238319612677515
QDSSGPPWTPA	11	Unmodified	_QDSSGPPWTPA_					0	0	0		nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.8170776367188	2	571.759278	1141.504	-0.34811	-0.00019903	4.0232	0.0023003	3.6751	0.0021013	571.7615173849157	19.606	0.36874	19.606	19.366	19.735	0					10	7	2	0	0	0	0.024749	1	415	415		28.081	5.039	1	27961			61748	18708	43433	43496	66917	66917					-0.06108929667038865
QDSSPGPAL	9	Unmodified	_QDSSPGPAL_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.21185302734375	2	436.211432	870.408311	0.53867	0.00023498	-0.090087	-3.9297E-05	0.44859	0.00019568	436.2113033738911	42.722	1.2314	42.748	42.393	43.624	0.026016					85	33	4	0	0	0	0.33245	1	3925	3925		71.296	0	1	6782100			61749	18827	43434	43497	66918	66918					-0.03207657787288554
QDSTLETSIY	10	Unmodified	_QDSTLETSIY_					0	0	0		ENST00000413040.6_1_7:151038900-151042524:+|nuORF	ENST00000413040.6_1_7:151038900-151042524:+|nuORF	ENST00000413040.6_1_7:151038900-151042524:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.7719116210938	2	578.772051	1155.52955	-0.36942	-0.00021381	1.1188	0.00064755	0.74942	0.00043374	578.7726656948049	56.935	0.66018	56.767	56.52	57.18	-0.1672					31	17	2	0	0	0	0.83673	1	6194	6194		58.23	3.4536	1	2039800			61750	13834	43435	43498	66919	66919					-0.04199499935270978
QDSTLETSIY	10	Unmodified	_QDSTLETSIY_					0	0	0		ENST00000413040.6_1_7:151038900-151042524:+|nuORF	ENST00000413040.6_1_7:151038900-151042524:+|nuORF	ENST00000413040.6_1_7:151038900-151042524:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.772051	1155.52955	-0.2956	-0.00017109	0.93784	0.0005428	0.64224	0.00037171	578.7724977173584	57.039	0.80032	56.837	56.52	57.32	-0.20209	0.015016	-7.5276E-05	NaN	58.23	60	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2119800			61751	13834	43435	43498							-0.04199499935270978
QDSTLETSIY	10	Unmodified	_QDSTLETSIY_					0	0	0		ENST00000413040.6_1_7:151038900-151042524:+|nuORF	ENST00000413040.6_1_7:151038900-151042524:+|nuORF	ENST00000413040.6_1_7:151038900-151042524:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	578.772051	1155.52955	-0.30743	-0.00017793	0.64764	0.00037484	0.34021	0.00019691	578.7725911765392	57.086	1.0132	56.861	56.307	57.321	-0.22479	0.0395	-0.00041119	NaN	58.23	72	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1767500			61752	13834	43435	43498							-0.04199499935270978
QDSVNALEV	9	Unmodified	_QDSVNALEV_					0	0	0		nc|ENSG00000167965|Q9BVC4-5|MLST8	nc|ENSG00000167965|Q9BVC4-5|MLST8	nc|ENSG00000167965|Q9BVC4-5|MLST8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.74346923828125	2	487.743096	973.47164	-0.63202	-0.00030826	1.629	0.00079452	0.99695	0.00048625	487.74378335931016	29.665	0.84532	29.492	29.07	29.915	-0.17258					46	19	3	0	0	0	0.40693	1	1834	1834		65.465	2.1591	1	1588700			61753	18485	43436	43499	66920	66920					-0.016157170700353163
QDSWSGTLIE	10	Unmodified	_QDSWSGTLIE_					0	0	0			REV__nc|ENSG00000000971|P08603|CFH	REV__nc|ENSG00000000971|P08603|CFH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.230712890625	2	568.266936	1134.51932	-0.35857	-0.00020376	4.4371	0.0025215	4.0785	0.0023177	568.2690245311047	37.94	1.2566	37.761	37.165	38.422	-0.17929					57	34	2	0	0	0	0.03519	1	3191	3191		40.778	10.46	1	280370	+		61754	19754	43437	43500	66921	66921					-0.042560628698538494
QDTFMVLAN	9	Unmodified	_QDTFMVLAN_					0	0	0		ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	ENSG00000186910|ENST00000334708|SERPINA11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.8211059570312	2	519.749867	1037.48518	0.069001	3.5863E-05	-3.2224	-0.0016748	-3.1534	-0.001639	519.7484994382194	80.575	0.33109	80.429	80.241	80.572	-0.146					11	7	3	0	0	0	0.024427	1	9636	9636		26.693	0	1	228040			61755	9592	43438	43501	66922	66922					-0.03206182562462345
QDTFTAAVY	9	Unmodified	_QDTFTAAVY_					0	0	0		VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant;ENSG00000112299|ENST00000367928|VNN1	VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	VNN1|p.D141Tfs*57|1|0.33|ENSG00000112299|chr6:132694103-132694103|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2798767089844	2	508.24019	1014.46583	-0.53467	-0.00027174	3.4859	0.0017717	2.9512	0.0014999	508.24255005365796	47.93	0.69754	47.654	47.382	48.08	-0.27598					35	18	3	0	0	0	0.024354	1	4767	4767		57.811	7.7867	1	112470			61756	3197	43439	43502	66923	66923					-0.040828155817280276
QDTGNVYDQSV	11	Unmodified	_QDTGNVYDQSV_					0	0	0			REV__ENST00000506409.1_1_4:17616277-17621640:+|nuORF	REV__ENST00000506409.1_1_4:17616277-17621640:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2703857421875	2	613.270207	1224.52586	-1.6522	-0.0010133	1.7565	0.0010772	0.10426	6.3938E-05	613.2716235554299	25.164	0.85566	24.937	24.538	25.394	-0.22683					70	19	6	0	0	0	0.80896	1	1154	1154		65.465	8.7443	1	1793900	+		61757	22416	43440	43503	66924	66924					-0.07742169709172231
QDTLGRGPTL	10	Unmodified	_QDTLGRGPTL_					0	0	0		ENST00000517825.1_1_8:25890599-25902375:-|nuORF;ENSG00000221818|ENST00000520164|EBF2	ENST00000517825.1_1_8:25890599-25902375:-|nuORF	ENST00000517825.1_1_8:25890599-25902375:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.7952270507812	2	529.285463	1056.55637	-1.5482	-0.00081945	-2.0317	-0.0010754	-3.5799	-0.0018948	529.2870915374021	62.381	0.6823	62.381	62.335	63.018	0					37	17	3	0	0	0	0.03519	1	7349	7349		45.972	5.9141	1	1075400			61758	10610	43441	43504	66925	66925					0.030356534665770596
QDTPDSPASP	10	Unmodified	_QDTPDSPASP_					0	0	0			REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3072509765625	2	507.722361	1013.43017	-1.0633	-0.00053987	0.43581	0.00022127	-0.62751	-0.0003186	507.72253193787924	43.745	0.65372	43.525	43.246	43.9	-0.21938					43	17	4	0	0	0	0.03519	1	4062	4062		42.864	0	1	1613200	+		61759	23954	43442	43505	66926	66926					-0.07600897829377118
QDTPLGDSRSH	11	Unmodified	_QDTPLGDSRSH_					0	0	0		ENSG00000282419|ENST00000632372|TEX13D	ENSG00000282419|ENST00000632372|TEX13D	ENSG00000282419|ENST00000632372|TEX13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.19549560546875	3	404.858302	1211.55308	0.29504	0.00011945	2.5418	0.0010291	2.8369	0.0011485	405.1939215373016	33.808	0.42981	33.803	33.599	34.029	-0.0045624					18	10	3	0	0	0	0.024746	1	2465	2465		15.921	0	1	80411			61760	11082	43443	43506	66927	66927					-0.044236413780936346
QDTPLGDSRSH	11	Unmodified	_QDTPLGDSRSH_					0	0	0		ENSG00000282419|ENST00000632372|TEX13D	ENSG00000282419|ENST00000632372|TEX13D	ENSG00000282419|ENST00000632372|TEX13D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	404.858302	1211.55308	0.848	0.00034332	1.0151	0.00041097	1.8631	0.00075428	405.1935110074406	33.992	0.47592	33.992	33.816	34.292	0	0.094148	-0.0011668	NaN	19.627	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101240			61761	11082	43443	43506							-0.044236413780936346
QDTSKFWYKPH	11	Unmodified	_QDTSKFWYKPH_					0	0	0		nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	nc|ENSG00000111077|Q63HR2-5|TNS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2843017578125	3	479.570093	1435.68845	-0.51232	-0.00024569	-4.4102	-0.002115	-4.9226	-0.0023607	479.90145250473284	75.448	0.42595	75.448	75.307	75.732	0					14	11	2	0	0	0	0.024821	1	9304	9304		9.6461	0	1	427480			61762	3086	43444	43507	66928	66928					-0.011967415164917838
QDTSYSFNP	9	Unmodified	_QDTSYSFNP_					0	0	0			REV__ENSG00000183303|ENST00000329434|OR5P2	REV__ENSG00000183303|ENST00000329434|OR5P2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2745361328125	2	529.724904	1057.43525	-0.42231	-0.00022371	2.8704	0.0015205	2.448	0.0012968	529.7264336332242	46.909	0.46429	46.756	46.514	46.978	-0.15301					17	11	2	0	0	0	0.024374	1	4617	4617		49.442	10.189	1	175390	+		61763	27562	43445	43508	66929	66929					-0.0911659396676896
QDTVMGQPI	9	Unmodified	_QDTVMGQPI_					0	0	0			REV__ENST00000548939.1_1_12:70732225-70736007:+|nuORF	REV__ENST00000548939.1_1_12:70732225-70736007:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2947692871094	2	494.742042	987.469531	-0.048447	-2.3969E-05	0.13967	6.9101E-05	0.091224	4.5133E-05	494.7422607779695	52.929	0.6214	52.929	52.75	53.372	0					22	16	2	0	0	0	0.024447	1	5738	5738		32.812	7.2384	1	98134	+		61764	34886	43446	43509	66930	66930					-0.02470469079491977
QDTVQCRKA	9	Unmodified	_QDTVQCRKA_					0	0	0		nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3;ENST00000496526.5_1_3:9870593-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7-6|TTLL3;ENST00000473661.5_1_3:9867594-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7-2|TTLL3;ENST00000427220.5_1_3:9860474-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7-5|TTLL3;nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000214021|Q9Y4R7|TTLL3	nc|ENSG00000214021|Q9Y4R7|TTLL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2211303710938	2	524.76384	1047.51313	-0.3035	-0.00015927	1.8156	0.00095277	1.5121	0.00079351	525.2676723740078	28.118	0.15316	27.966	27.847	28	-0.15195					6	3	2	0	0	0	0.024447	1	1584	1584		40.778	0	1	38813			61765	10536	43447	43510	66931	66931					-0.008728595823640717
QDVALRCD	8	Unmodified	_QDVALRCD_					0	0	0		nc|ENSG00000211727|A0A1B0GX31|TRBV7-6	nc|ENSG00000211727|A0A1B0GX31|TRBV7-6	nc|ENSG00000211727|A0A1B0GX31|TRBV7-6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2685852050781	2	460.218734	918.422915	-0.53212	-0.00024489	-2.8447	-0.0013092	-3.3768	-0.0015541	460.2172755551503	40.284	0.99449	40.134	39.821	40.816	-0.1497					57	26	3	0	0	0	0.027866	1	3432	3432		18.324	0	1	1845000			61766	18696	43448	43511	66932	66932					-0.039559089108024637
QDVDVSSHS	9	Unmodified	_QDVDVSSHS_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7740783691406	2	487.214703	972.414853	-0.50983	-0.0002484	-2.1121	-0.001029	-2.6219	-0.0012774	487.21365396642886	27.277	0.3417	27.109	26.931	27.273	-0.16816					12	7	2	0	0	0	0.024292	1	1499	1499		49.442	18.938	1	44587			61767	1353	43449	43512	66933	66933					-0.07245764626554774
QDVETCLSI	9	Unmodified	_QDVETCLSI_					0	0	0		nc|ENSG00000101246|Q13795-3|ARFRP1;nc|ENSG00000101246|Q13795-2|ARFRP1;ENSG00000101246|ENST00000622789|ARFRP1	nc|ENSG00000101246|Q13795-3|ARFRP1	nc|ENSG00000101246|Q13795-3|ARFRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2753601074219	2	504.239332	1006.46411	-0.08431	-4.2512E-05	1.1022	0.00055577	1.0179	0.00051326	504.23939748271476	57.231	1.5234	57.066	56.058	57.582	-0.16432					93	41	4	0	0	0	0.024288	1	6341	6341		22.58	0	1	679910			61768	2299	43450	43513	66934	66934					-0.03886192661968835
QDVFEMRF	8	Unmodified	_QDVFEMRF_					0	0	0		ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000169925|Q15059-2|BRD3;nc|ENSG00000141867|O60885-2|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-3|BRD4;BRD3|p.K414R|1|0.16|ENSG00000169925|chr9:134041926-134041926|T/C|missense_variant	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.293212890625	2	536.250034	1070.48552	-0.96339	-0.00051662	0.29888	0.00016028	-0.6645	-0.00035634	536.2497219702291	44.285	0.5385	44.322	44.108	44.647	0.0369					23	15	2	0	0	0	0.027866	1	4192	4192		29.15	1.2673	1	78617			61769	5525	43451	43514	66935	66935					-0.04690762842596996
QDVGRKLI	8	Unmodified	_QDVGRKLI_					0	0	0			REV__ENST00000567449.5_1_15:30918234-30918318:+|nuORF	REV__ENST00000567449.5_1_15:30918234-30918318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.75341796875	2	464.782359	927.550165	-1.4393	-0.00066895	1.2457	0.00057898	-0.19358	-8.9973E-05	464.78284457529685	29.998	0.64943	29.998	29.487	30.137	0					18	15	2	0	0	0	0.027866	1	1865	1865		44.117	0	1	49915	+		61770	35321	43452	43515	66936	66936					0.08349180025709302
QDVIKDVR	8	Unmodified	_QDVIKDVR_					0	0	0			REV__nc|ENSG00000105875|A4D1P6-3|WDR91	REV__nc|ENSG00000105875|A4D1P6-3|WDR91	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2966613769531	2	486.777274	971.539994	-0.69164	-0.00033668	0.39713	0.00019331	-0.29452	-0.00014336	486.77717574265364	32.837	0.56438	32.844	32.553	33.117	0.0066261					33	14	3	0	0	0	0.027866	1	2273	2273		23.042	0	1	1026400	+		61771	21572	43453	43516	66937	66937					0.053085723004642205
QDVKLNRI	8	Unmodified	_QDVKLNRI_					0	0	0			REV__nc|ENSG00000174292|Q13470|TNK1	REV__nc|ENSG00000174292|Q13470|TNK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3060302734375	2	493.293091	984.571629	0.043092	2.1257E-05	-0.96426	-0.00047566	-0.92117	-0.0004544	493.29274976261394	69.29	0.24976	69.29	69.094	69.344	0					11	6	2	0	0	0	0.027866	1	8350	8350		17.365	0	1	455470	+		61772	26851	43455	43517	66938	66938					0.07872565054424285
QDVKLQPPE	9	Unmodified	_QDVKLQPPE_					0	0	0		ENST00000602308.1_1_1:228584351-228584825:-|nuORF;nc|ENSG00000154370|Q96F44-2|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11	ENST00000602308.1_1_1:228584351-228584825:-|nuORF	ENST00000602308.1_1_1:228584351-228584825:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7694091796875	2	527.282389	1052.55022	-0.94987	-0.00050085	0.30341	0.00015998	-0.64646	-0.00034087	527.2824958310589	53.175	0.64484	53.175	52.864	53.509	0					40	17	3	0	0	0	0.020356	1	5776	5776		115.49	16.865	1	1244600			61773	6408	43456	43518	66939	66939					0.026051352350577872
QDVKLQPPE	9	Unmodified	_QDVKLQPPE_					0	0	0		ENST00000602308.1_1_1:228584351-228584825:-|nuORF;nc|ENSG00000154370|Q96F44-2|TRIM11;nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11	ENST00000602308.1_1_1:228584351-228584825:-|nuORF	ENST00000602308.1_1_1:228584351-228584825:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7694091796875	2	527.282389	1052.55022	-0.096378	-5.0818E-05	-0.46844	-0.000247	-0.56482	-0.00029782	527.2820115431957	53.015	0.61348	53.111	52.868	53.481	0.095669					44	16	4	0	0	0	0.022176	1	5681	5681		112.11	16.292	1	1128500			61774	6408	43456	43518	66940	66940					0.026051352350577872
QDVKNSRRSI	10	Unmodified	_QDVKNSRRSI_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5364074707031	3	401.558187	1201.65273	1.0337	0.0004151	3.1237	0.0012543	4.1574	0.0016694	401.55951526616633	33.116	0.59765	32.916	32.649	33.247	-0.20019					30	14	3	0	0	0	0.03519	1	2297	2297		42.338	6.0204	1	438350			61775	18314	43457	43519	66941	66941					0.05997221026518673
QDVLDLRGVC	10	Unmodified	_QDVLDLRGVC_					0	0	0		ENST00000466311.1_1_3:184043131-184043233:+|nuORF	ENST00000466311.1_1_3:184043131-184043233:+|nuORF	ENST00000466311.1_1_3:184043131-184043233:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7796020507812	2	559.287148	1116.55974	-0.6909	-0.00038641	0.35365	0.00019779	-0.33725	-0.00018862	559.2874742229261	60.371	0.52308	60.195	59.96	60.483	-0.1761					17	12	2	0	0	0	0.03519	1	6698	6698		22.58	0	1	350710			61776	14807	43458	43520	66942	66942					0.0061258024893504626
QDVLSATK	8	Unmodified	_QDVLSATK_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.72503662109375	2	431.23745	860.460347	-0.083435	-3.598E-05	-0.7563	-0.00032615	-0.83974	-0.00036213	431.2355418036381	36.313	0.1768	36.108	35.987	36.164	-0.20518					7	4	2	0	0	0	0.027866	1	2836	2836		10.866	0	1	52837	+		61777	28369	43459	43521	66943	66943					0.024535056264653576
QDVNVAIT	8	Unmodified	_QDVNVAIT_					0	0	0		nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L;ENST00000581423.1_1_19:5687386-5687953:+|nuORF;nc|ENSG00000167733|Q7Z5J1-4|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-5|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-3|HSD11B1L;ENSG00000167733|ENST00000339423|HSD11B1L;nc|ENSG00000167733|Q7Z5J1|HSD11B1L	nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L	nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.22991943359375	2	430.229625	858.444697	-0.52877	-0.00022749	0.74555	0.00032076	0.21679	9.3269E-05	430.2298226062416	27.761	1.3254	27.593	27.317	28.642	-0.16816					66	31	5	0	0	0	0.76379	1	1566	1566		62.107	1.1355	1	1874800			61778	7731	43460	43522	66944	66944					0.009812191094169975
QDVNYKVCH	9	Unmodified	_QDVNYKVCH_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.3002319335938	2	553.258391	1104.50223	-0.093987	-5.1999E-05	0.083675	4.6294E-05	-0.010312	-5.705E-06	553.258277714776	53.839	0.59338	53.935	53.665	54.259	0.096607					38	16	3	0	0	0	0.024436	1	5803	5803		38.806	0	1	1084700	+		61779	28991	43461	43523	66945	66945					-0.04584261956665614
QDVPFMLLL	9	Unmodified	_QDVPFMLLL_					0	0	0			REV__ENST00000382938.3_1_15:29363239-29394119:+|nuORF	REV__ENST00000382938.3_1_15:29363239-29394119:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8244018554688	2	538.296453	1074.57835	-0.97105	-0.00052271	3.68	0.0019809	2.7089	0.0014582	538.298487625296	48.263	1.1377	48.263	48.003	49.141	0					72	32	4	0	0	0	0.024	1	4915	4915		65.803	14.468	1	8304400	+		61780	31550	43462	43524	66946	66946					0.0440474189078941
QDVPHPGEV	9	Unmodified	_QDVPHPGEV_					0	0	0		ENST00000360537.6_1_6:144269163-144269316:-|nuORF	ENST00000360537.6_1_6:144269163-144269316:-|nuORF	ENST00000360537.6_1_6:144269163-144269316:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2705078125	2	489.237981	976.461409	-1.3755	-0.00067297	4.3219	0.0021145	2.9464	0.0014415	489.24005453324395	39.025	0.81212	39.049	38.608	39.421	0.023727					46	21	3	0	0	0	0.023473	1	3280	3280		56.434	0	1	639320			61781	12770	43463	43525	66947	66947					-0.02776280004616183
QDVRDQLEQA	10	Unmodified	_QDVRDQLEQA_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.2038269042969	3	401.198436	1200.57348	0.082863	3.3244E-05	-2.3907	-0.00095916	-2.3079	-0.00092592	401.1974622927132	25.784	0.53737	25.558	25.352	25.89	-0.22683					30	12	3	0	0	0	0.03519	1	1236	1236		50.034	0	1	978610			61782	1384	43464	43526	66948	66948					-0.018784707182931015
QDVRVLVL	8	Unmodified	_QDVRVLVL_					0	0	0			REV__ENSG00000124140|ENST00000243964|SLC12A5	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2925109863281	2	471.292559	940.570566	0.3653	0.00017216	-0.44603	-0.00021021	-0.080726	-3.8046E-05	471.29235913514	50.39	1.4067	50.238	49.817	51.224	-0.1512					111	40	4	0	0	0	0.5947	2	5251	5227;5251		76.774	7.6812	1	27149000	+		61783	22735	43465	43527	66949;66950	66950					0.09790350685523208
QDVRVLVLL	9	Unmodified	_QDVRVLVLL_					0	0	0			REV__ENSG00000124140|ENST00000243964|SLC12A5	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2918090820312	2	527.834591	1053.65463	0.27032	0.00014268	-3.3852	-0.0017868	-3.1149	-0.0016441	527.8336663356647	54.617	0.14333	54.715	54.626	54.769	0.098015					5	3	2	0	0	0	0.024313	1	5902	5902		51.193	0	1	56774	+		61784	22735	43466	43528	66951	66951					0.12994881782424272
QDVRVLVLL	9	Unmodified	_QDVRVLVLL_					0	0	0			REV__ENSG00000124140|ENST00000243964|SLC12A5	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2394409179688	2	527.834591	1053.65463	1.4729	0.00077745	-1.8418	-0.00097218	-0.36891	-0.00019472	527.8335896732136	63.364	0.57044	63.418	63.126	63.697	0.054104					36	15	3	0	0	0	0.024367	1	7353	7353		44.377	7.2181	1	659000	+		61785	22735	43466	43528	66952	66952					0.12994881782424272
QDVTLHDLD	9	Unmodified	_QDVTLHDLD_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7694091796875	2	528.253828	1054.4931	-0.79227	-0.00041852	-1.5686	-0.00082864	-2.3609	-0.0012472	528.2530110934964	53.364	2.273	53.364	51.836	54.109	0					135	61	4	0	0	0	0.023239	1	5776	5776		74.255	0	1	1917000			61786	8589	43467	43529	66953	66953					-0.03196332041329697
QDVTWHVEI	9	Unmodified	_QDVTWHVEI_					0	0	0			REV__ENSG00000169855|ENST00000464233|ROBO1	REV__ENSG00000169855|ENST00000464233|ROBO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.32421875	2	563.780013	1125.54547	-0.63828	-0.00035985	-0.050793	-2.8636E-05	-0.68908	-0.00038849	563.779941007522	61.068	1.5661	60.854	60.531	62.097	-0.21339					86	41	4	0	0	0	0.024397	1	7211	7211		47.657	19.775	1	3824700	+		61787	26403	43468	43530	66954	66954					-0.012277489077177961
QDVTYVYVL	9	Unmodified	_QDVTYVYVL_					0	0	0			REV__OPA3-EML2|1|fusion	REV__OPA3-EML2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2821044921875	2	550.28714	1098.55973	-0.304	-0.00016729	4.4378	0.002442	4.1338	0.0022748	550.2894989926234	61.003	1.1714	60.797	60.421	61.592	-0.20599					58	28	3	0	0	0	0.024506	1	6923	6923		16.473	0	1	552250	+		61788	37303	43469	43531	66955	66955					0.01438903520556778
QDWGPITSI	9	Unmodified	_QDWGPITSI_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF;WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion	nc|ENSG00000134987|Q8NI36|WDR36;WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.29278564453125	2	508.756007	1015.49746	-0.0037447	-1.9052E-06	3.7521	0.0019089	3.7484	0.001907	508.75789508791405	51.172	0.53267	50.896	50.702	51.235	-0.27643					23	13	2	0	0	0	0.024495	1	5208	5208		9.1829	0	1	633570			61789	38151;4848	43470	43532	66956	66956					-0.00966822827751912
QDWQAYQH	8	Unmodified	_QDWQAYQH_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2664794921875	2	538.23323	1074.45191	-0.2686	-0.00014457	-2.1356	-0.0011495	-2.4042	-0.001294	538.2321303250335	32.245	0.43367	32.009	31.782	32.216	-0.23666					13	9	2	0	0	0	0.027866	1	2218	2218		40.573	13.88	1	69718			61790	4485;14972	43471	43533	66957	66957					-0.0823404829015999
QDWRRARGS	9	Unmodified	_QDWRRARGS_					0	0	0		ENST00000376499.7_2_9:84303220-84303679:-|nuORF	ENST00000376499.7_2_9:84303220-84303679:-|nuORF	ENST00000376499.7_2_9:84303220-84303679:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.29296875	2	566.291945	1130.56934	-0.54294	-0.00030746	1.3303	0.00075333	0.78735	0.00044587	566.2925455790925	54.34	0.85077	54.203	53.959	54.81	-0.13617					50	23	4	0	0	0	0.5973	1	5779	5779		52.937	5.2794	1	3195900			61791	13179	43472	43534	66958	66958					0.009275293693235653
QDWRRVKGSPA	11	Unmodified	_QDWRRVKGSPA_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2557678222656	3	433.902065	1298.68437	0.055706	2.4171E-05	-4.2326	-0.0018365	-4.1769	-0.0018124	433.89944680476503	102.9	0.24094	102.77	102.67	102.91	-0.12783					7	5	2	0	0	0	0.024735	1	12821	12821		34.087	13.249	1	257010	+		61792	27144	43473	43535	66959	66959					0.04697213780468701
QDYKKILI	8	Unmodified	_QDYKKILI_					0	0	0			REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.768798828125	2	510.808042	1019.60153	0.21202	0.0001083	-0.41832	-0.00021368	-0.2063	-0.00010538	510.8076633055186	68.558	0.79729	68.315	67.992	68.79	-0.24278					42	19	4	0	0	0	0.027866	1	7993	7993		38.806	4.6336	1	928660	+		61793	26547	43474	43536	66960	66960					0.09251503999769284
QDYQFYIQN	9	Unmodified	_QDYQFYIQN_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.5874938964844	3	406.852377	1217.5353	-0.93246	-0.00037937	4.012	0.0016323	3.0795	0.0012529	406.8547834812081	25.821	0.17212	25.651	25.537	25.709	-0.17052					5	3	2	0	0	0	0.024389	1	1217	1217		35.152	7.0705	1	32863			61794	4075	43475	43537	66961	66961					-0.064763566329475
QDYVKRYI	8	Unmodified	_QDYVKRYI_					0	0	0			REV__ENSG00000107960|ENST00000224950|STN1	REV__ENSG00000107960|ENST00000224950|STN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.31884765625	2	542.792924	1083.57129	0.090483	4.9113E-05	-0.018658	-1.0127E-05	0.071825	3.8986E-05	542.7925782886896	58.819	0.54023	58.819	58.568	59.108	0					27	14	2	0	0	0	0.027866	1	6694	6694		45.952	0	1	564650	+		61795	21704	43476	43538	66962	66962					0.032851453345756454
QEAGHDLMDIF	11	Unmodified	_QEAGHDLMDIF_					0	0	0		ENSG00000132591|ENST00000254928|ERAL1;ENST00000471992.1_1_17:27185141-27187568:+|nuORF	ENSG00000132591|ENST00000254928|ERAL1	ENSG00000132591|ENST00000254928|ERAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	638.29052734375	2	638.287345	1274.56014	0.22373	0.0001428	1.5536	0.00099163	1.7773	0.0011344	638.2886340041346	16.62	0.41161	16.467	16.344	16.756	-0.15376					11	9	2	0	0	0	1.0557	1	84	84		23.523	2.5758	1	40717			61796	4624	43477	43539	66963	66963					-0.06616044821885225
QEAIPFLMLL	10	Unmodified	_QEAIPFLMLL_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.8062744140625	2	587.83066	1173.64677	-1.6083	-0.00094541	-1.6595	-0.00097553	-3.2678	-0.0019209	587.8294716714848	62.35	0.42052	62.172	61.923	62.343	-0.17781					27	10	3	0	0	0	0.03519	1	6984	6984		19.997	0	1	794470			61797	18203	43478	43540	66964	66964					0.0668898647061269
QEAKQKVE	8	Unmodified	_QEAKQKVE_					0	0	0		ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7999267578125	2	480.261456	958.50836	-0.23347	-0.00011213	0.23087	0.00011088	-0.0026037	-1.2505E-06	480.26143700879464	27.072	0.45987	27.059	26.745	27.205	-0.012983					21	11	2	0	0	0	0.027866	1	1437	1437		90.777	8.5361	1	306380			61798	4408	43479	43541	66965	66965					0.02744579546526893
QEARTIMMGIL	11	Unmodified	_QEARTIMMGIL_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	631.7882080078125	2	631.833408	1261.65226	-0.64863	-0.00040983	2.8139	0.0017779	2.1653	0.0013681	631.8351556109201	53.978	0.45502	53.733	53.525	53.98	-0.2453					33	14	3	0	0	0	0.024747	1	5733	5733		24.519	11.707	1	695340	+		61799	23052	43480	43542	66966	66966					0.0319034199080761
QEDPMDRYK	9	Unmodified	_QEDPMDRYK_					0	0	0		ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;nc|ENSG00000152061|Q5R372-9|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	591.8092041015625	2	591.266413	1180.51827	-1.1845	-0.00070035	-4.1065	-0.0024281	-5.291	-0.0031284	591.263482981511	41.903	0.45166	41.771	41.565	42.017	-0.13219					31	12	3	0	0	0	0.024495	1	3760	3760		42.396	12.078	1	215000			61800	6245	43481	43543	66967	66967					-0.06476600510404751
QEDVQEMN	8	Oxidation (M)	_QEDVQEM(Oxidation (M))N_		QEDVQEM(1)N		QEDVQEM(71)N	0	0	1		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.27392578125	2	504.700571	1007.38659	-0.38386	-0.00019373	-2.6264	-0.0013255	-3.0103	-0.0015193	504.69918803933086	26.599	0.66729	26.431	26.224	26.892	-0.16816					26	15	2	0	0	0	0.027866	1	1437	1437		71.296	30.723	1	166650			61801	972	43482	43544	66968	66968		26			-0.1168083059815217
QEDYFPDA	8	Unmodified	_QEDYFPDA_					0	0	0			REV__ENSG00000197892|ENST00000524189|KIF13B	REV__ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.6993103027344	2	492.700897	983.387241	-0.39945	-0.00019681	-3.1294	-0.0015419	-3.5289	-0.0017387	492.69932413101554	28.669	0.66713	28.517	28.243	28.91	-0.15195					43	15	4	0	0	0	0.845	1	1673	1673		55.504	0	1	978130	+		61802	28359	43483	43545	66969	66969					-0.10511667886817122
QEEATITWTC	10	Unmodified	_QEEATITWTC_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	591.8094482421875	2	591.260796	1180.50704	-1.13	-0.00066811	4.3802	0.0025898	3.2502	0.0019217	591.2633267835243	41.766	0.38317	41.766	41.505	41.888	0					19	10	2	0	0	0	0.03519	1	3748	3748		32.812	0	1	213190	+		61803	22617	43484	43546	66970	66970					-0.07599422604562278
QEEEKKRL	8	Unmodified	_QEEEKKRL_					0	0	0		ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2929077148438	2	530.293288	1058.57202	-0.30203	-0.00016017	-0.33241	-0.00017627	-0.63444	-0.00033644	530.2930172812954	23.723	0.66337	23.799	23.518	24.182	0.076241					38	14	4	0	0	0	0.74904	1	912	912		63.306	0	1	987440			61804	5735	43485	43547	66971	66971					0.04507939983614051
QEEEYCKW	8	Carbamidomethyl (C)	_QEEEYC(Carbamidomethyl (C))KW_	QEEEYC(1)KW		QEEEYC(61)KW		0	1	0			REV__ENSG00000259823|ENST00000590317|LYPD8	REV__ENSG00000259823|ENST00000590317|LYPD8	MSMS	OPSCC_40_ClassI_Rep-2	5	586.2412719726562	2	586.239864	1170.46517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.577	1	61.399	60.899	61.899	-0.17781								0	0	0	0.44619	1	6898	6898		60.972	6.1956	1		+		61805	29104	43486	43548	66972	66972	382				-0.1132397829310321
QEEIRKIQI	9	Unmodified	_QEEIRKIQI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.8374633789062	2	578.837862	1155.66117	-1.1072	-0.00064089	0.11038	6.3894E-05	-0.99682	-0.000577	578.8381502535933	38.355	0.83533	38.272	37.918	38.753	-0.082512					63	22	4	0	0	0	0.057894	1	3208	3208		125.81	5.193	1	2917300			61806	4485	43487	43549	66973	66973					0.08956774943135315
QEEKRGLNI	9	Unmodified	_QEEKRGLNI_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1;nc|ENSG00000134668|Q6ZMY3-4|SPOCD1;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7824096679688	2	543.798737	1085.58292	-1.3882	-0.00075492	1.1363	0.00061794	-0.25188	-0.00013697	543.799380926355	38.327	0.5411	38.244	37.95	38.492	-0.082512					24	14	3	0	0	0	0.024313	1	3229	3229		60.118	10.582	1	438300			61807	4816;37964	43488	43550	66974	66974					0.043553423578941874
QEELHKLQG	9	Unmodified	_QEELHKLQG_					0	0	0			REV__ENSG00000163207|ENST00000368764|IVL	REV__ENSG00000163207|ENST00000368764|IVL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3021240234375	2	541.285463	1080.55637	-0.4011	-0.00021711	-3.017	-0.001633	-3.4181	-0.0018501	541.2829372375218	56.803	0.3144	56.578	56.386	56.7	-0.22479					14	7	3	0	0	0	0.024457	1	6167	6167		29.15	1.2673	1	289160	+		61808	25544	43489	43551	66975	66975					0.01931653466544958
QEELRRMEEL	10	Unmodified	_QEELRRMEEL_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000473525.1_1_X:70516758-70517827:+|nuORF;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000116560|P23246-2|SFPQ	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	3	444.890726	1331.65035	-0.88597	-0.00039416	-1.2241	-0.00054459	-2.1101	-0.00093876	444.8899862188265	29.53	0.34104	29.285	29.099	29.44	-0.24524					11	7	2	0	0	0	0.03519	1	1819	1819		25.126	9.1192	1	45745			61809	5939;3555	43490	43552	66976	66976					-0.0022099549346421554
QEENWKFE	8	Unmodified	_QEENWKFE_					0	0	0		ENSG00000131748|ENST00000336308|STARD3;nc|ENSG00000131748|Q14849-2|STARD3;nc|ENSG00000131748|Q14849-3|STARD3;ENST00000471896.5_1_17:37815284-37815866:+|nuORF;ENST00000481171.5_1_17:37814925-37815866:+|nuORF;ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENSG00000131748|ENST00000336308|STARD3;ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENSG00000131748|ENST00000336308|STARD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2777709960938	2	555.248546	1108.48254	-0.24363	-0.00013528	-2.3709	-0.0013164	-2.6145	-0.0014517	555.2469754111285	41.522	0.26685	41.386	41.176	41.443	-0.13553					13	6	3	0	0	0	0.027866	1	3683	3683		45.952	15.634	1	81396			61810	4547;15395	43491	43553	66977	66977					-0.06736314695740475
QEEPVSLKPS	10	Unmodified	_QEEPVSLKPS_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8322143554688	2	557.292953	1112.57135	-0.36966	-0.00020601	2.0946	0.0011673	1.725	0.00096131	557.2940121534307	39.71	0.70552	39.487	39.225	39.93	-0.22311					36	17	4	0	0	0	0.03519	1	3347	3347		42.864	0	1	648990			61811	6567	43492	43554	66978	66978					0.01957100543904744
QEERAQDAD	9	Unmodified	_QEERAQDAD_					0	0	0		nc|ENSG00000154914|Q70EL4-3|USP43;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43;ENST00000573955.1_1_17:9604436-9604679:+|nuORF	nc|ENSG00000154914|Q70EL4-3|USP43	nc|ENSG00000154914|Q70EL4-3|USP43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2901000976562	2	531.228342	1060.44213	-0.66131	-0.0003513	-4.1134	-0.0021851	-4.7747	-0.0025364	531.2260809882803	55.46	0.59806	55.244	55.003	55.602	-0.21551					26	16	2	0	0	0	0.024447	1	5967	5967		19.104	0.77911	1	150730			61812	6442	43493	43555	66979	66979					-0.08567281086197909
QEEVQFLGL	9	Unmodified	_QEEVQFLGL_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7744750976562	2	531.776939	1061.53933	-0.19118	-0.00010167	-3.6982	-0.0019666	-3.8894	-0.0020683	531.775122620599	106.54	0.62704	106.54	106.23	106.86	0.0018311					46	21	3	0	0	0	0.80003	2	13591	13591;13609		39.253	4.9991	1	512730			61813	3495	43494	43556	66980;66981	66980					0.011017328607522359
QEEWDCLDP	9	Unmodified	_QEEWDCLDP_					0	0	0		ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant;ENST00000586068.5_1_19:37721355-37726669:+|nuORF;ENSG00000188283|ENST00000684119|ZNF383	ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant;ENSG00000188283|ENST00000684119|ZNF383	ZNF383|p.N164Lfs*5|1|0.09|ENSG00000188283|chr19:37242725-37242726|-/CTATTTCATA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.7347412109375	2	567.724046	1133.43354	0.28718	0.00016304	-2.242	-0.0012728	-1.9548	-0.0011098	567.7216363352859	59.515	0.44576	59.266	59.05	59.495	-0.24842					20	10	3	0	0	0	0.024457	1	6559	6559		29.15	8.2026	1	121520			61814	38188;9705	43495	43557	66982	66982					-0.12783971047019804
QEGCGYPMQ	9	Unmodified	_QEGCGYPMQ_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP;REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.33135986328125	2	506.696777	1011.379	-1.1019	-0.00055834	0.86654	0.00043907	-0.23539	-0.00011927	506.6970298717694	37.636	0.41556	37.572	37.452	37.868	-0.063385					15	11	2	0	0	0	0.024477	1	3061	3061		44.117	17.321	1	107390	+	+	61815	19526;22909	43496	43558	66983	66983					-0.12623261399437524
QEGYPKLF	8	Unmodified	_QEGYPKLF_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2431640625	2	491.255643	980.496732	-0.942	-0.00046276	4.2531	0.0020894	3.3111	0.0016266	491.25771096460994	37.363	0.46771	37.144	36.923	37.39	-0.2195					26	11	3	0	0	0	0.027866	1	3018	3018		31.955	5.1588	1	411080			61816	18737	43497	43559	66984	66984					0.005703825231876181
QEHINIHKL	9	Unmodified	_QEHINIHKL_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.2949829101562	2	566.317097	1130.61964	-1.0829	-0.00061327	3.9635	0.0022446	2.8805	0.0016313	566.3192814499855	33.358	0.28574	33.358	33.135	33.421	0					11	7	2	0	0	0	0.024506	1	2378	2378		30.504	0	1	90463			61817	18102	43498	43560	66985	66985					0.05955638974455724
QEHLRCFF	8	Unmodified	_QEHLRCFF_					0	0	0			REV__ENST00000475021.1_1_5:137525501-137525636:-|nuORF	REV__ENST00000475021.1_1_5:137525501-137525636:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8157958984375	2	540.258194	1078.50183	-1.5907	-0.00085939	1.3087	0.00070704	-0.28199	-0.00015235	540.2564668410707	45.648	0.66637	45.446	45.226	45.892	-0.20226					37	18	3	0	0	0	0.027866	1	4323	4323		35.201	0	1	389670	+		61818	33281	43499	43561	66986	66986					-0.03427636885840002
QEHRNMPQAD	10	Unmodified	_QEHRNMPQAD_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2708129882812	2	613.272561	1224.53057	-1.6522	-0.0010133	-2.0821	-0.0012769	-3.7343	-0.0022902	613.2716235554299	25.164	0.85566	24.937	24.538	25.394	-0.22683					70	19	6	0	0	0	0.42812	1	1175	1175		95.815	8.1187	1	1793900			61819	4015	43500	43562	66987	66987					-0.07271564047368884
QEHRNMPQAD	10	Unmodified	_QEHRNMPQAD_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2706909179688	2	613.272561	1224.53057	1.0482	0.00064282	-4.212	-0.0025831	-3.1639	-0.0019403	613.2698976121554	25.014	1.0217	24.842	24.471	25.492	-0.17151					58	23	4	0	0	0	0.37509	1	1103	1103		101.25	5.219	1	1897100			61820	4015	43500	43562	66988	66988					-0.07271564047368884
QEIAKLVN	8	Unmodified	_QEIAKLVN_					0	0	0			REV__nc|ENSG00000182287|P56377|AP1S2	REV__nc|ENSG00000182287|P56377|AP1S2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.80511474609375	2	457.768917	913.523281	0.64016	0.00029304	-0.65752	-0.00030099	-0.017364	-7.9486E-06	457.76870417320066	69.522	0.86211	69.229	68.933	69.795	-0.29291					29	21	3	0	0	0	0.027866	1	8354	8354		29.15	0	1	232600	+		61821	27466	43501	43563	66989	66989					0.06306071414530834
QEIIFYLGQ	9	Unmodified	_QEIIFYLGQ_					0	0	0		ENST00000419736.5_1_2:112234960-112237562:-|nuORF;ENST00000419680.6_1_2:87769744-87772356:+|nuORF	ENST00000419736.5_1_2:112234960-112237562:-|nuORF	ENST00000419736.5_1_2:112234960-112237562:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.7286376953125	2	555.795132	1109.57571	0.0099381	5.5236E-06	2.9249	0.0016256	2.9348	0.0016312	555.7966681645249	57.517	0.4548	57.517	57.148	57.603	0					14	10	2	0	0	0	0.02435	1	6465	6465		26.693	0	1	526750			61822	13957	43502	43564	66990	66990					0.025306097574684827
QEIPFSRKL	9	Unmodified	_QEIPFSRKL_					0	0	0			REV__ENSG00000101940|ENST00000376729|WDR13	REV__ENSG00000101940|ENST00000376729|WDR13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.26220703125	2	559.321848	1116.62914	-0.09239	-5.1675E-05	3.3081	0.0018503	3.2157	0.0017986	559.3237537207868	87.002	1.5284	86.967	86.086	87.614	-0.035355					78	35	3	0	0	0	0.024209	1	10993	10993		76.774	27.238	1	254990	+		61823	21267	43503	43565	66991	66991					0.07549407259989493
QEIPFSRKL	9	Unmodified	_QEIPFSRKL_					0	0	0			REV__ENSG00000101940|ENST00000376729|WDR13	REV__ENSG00000101940|ENST00000376729|WDR13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	559.321848	1116.62914	0.2755	0.00015409	2.2858	0.0012785	2.5613	0.0014326	559.3234479300633	86.929	1.3992	86.929	86.214	87.613	0	0.036388	-0.00072821	NaN	76.774	78	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277060	+		61824	21267	43503	43565							0.07549407259989493
QEIPFSRKL	9	Unmodified	_QEIPFSRKL_					0	0	0			REV__ENSG00000101940|ENST00000376729|WDR13	REV__ENSG00000101940|ENST00000376729|WDR13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	559.321848	1116.62914	0.1255	7.0197E-05	2.8846	0.0016134	3.0101	0.0016836	559.32361842466	86.76	1.825	86.782	85.816	87.641	0.021263	-0.11099	-5.836E-05	NaN	76.774	87	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325930	+		61825	21267	43503	43565							0.07549407259989493
QEIPRCKF	8	Unmodified	_QEIPRCKF_					0	0	0		nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2860412597656	2	510.768394	1019.52224	-1.0377	-0.00053003	3.7269	0.0019036	2.6892	0.0013736	510.7700875309065	28.296	0.84087	28.296	27.689	28.53	0					27	20	2	0	0	0	0.027866	1	1574	1574		37.159	10.466	1	209900			61826	18233	43504	43566	66992	66992					0.01325533773956522
QEIPRCKF	8	Unmodified	_QEIPRCKF_					0	0	0		nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	nc|ENSG00000124092|Q8NI51-9|CTCFL	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.768394	1019.52224	-0.70401	-0.00035959	2.9097	0.0014862	2.2057	0.0011266	510.7700316559298	27.887	0.40829	27.968	27.759	28.168	0.081293	-0.16394	-0.00036086	NaN	37.159	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212350			61827	18233	43504	43566							0.01325533773956522
QEISKSLLK	9	Unmodified	_QEISKSLLK_					0	0	0			REV__nc|ENSG00000048052|Q9UKV0|HDAC9	REV__nc|ENSG00000048052|Q9UKV0|HDAC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.319091796875	2	523.316232	1044.61791	0.20123	0.00010531	-0.37446	-0.00019596	-0.17322	-9.0651E-05	523.3158833450477	18.329	0.74305	18.125	17.767	18.51	-0.20371					39	14	5	0	0	0	0.70156	1	271	271		45.972	1.5951	1	309170	+		61828	20136	43505	43567	66993	66993					0.09738585165860059
QEIVAKIN	8	Unmodified	_QEIVAKIN_					0	0	0			REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	457.768917	913.523281	-0.48785	-0.00022332	-1.4175	-0.00064887	-1.9053	-0.00087219	457.7680717561878	60.715	0.29816	60.501	60.384	60.682	-0.21339					9	7	2	0	0	0	0.027866	1	6986	6986		16.473	0	1	44371	+		61829	24445	43506	43568	66994	66994					0.06306071414519465
QEIVAKIN	8	Unmodified	_QEIVAKIN_					0	0	0			REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	REV__ENST00000507937.1_1_5:177574516-177575030:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.768917	913.523281	-1.6629	-0.00076121	1.746	0.00079924	0.083084	3.8033E-05	457.7696605971089	60.429	0.21793	60.507	60.356	60.574	0.078888	0.0030282	0.0010496	NaN	10.866	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64071	+		61830	24445	43506	43568							0.06306071414519465
QEIYKPKY	8	Unmodified	_QEIYKPKY_					0	0	0			REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7791748046875	2	534.78985	1067.56515	-0.46463	-0.00024848	0.28205	0.00015084	-0.18258	-9.7641E-05	534.7896234048105	63.801	0.73597	63.609	63.302	64.038	-0.19243					27	18	2	0	0	0	0.027866	1	7201	7201		37.159	1.5408	1	249960	+		61831	23919	43507	43569	66995	66995					0.034066271030496864
QEIYKPKY	8	Unmodified	_QEIYKPKY_					0	0	0			REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.78985	1067.56515	-0.32834	-0.00017559	0.57445	0.00030721	0.24611	0.00013162	534.789992892027	63.8	0.75808	63.548	63.192	63.95	-0.25141	-0.044067	0.00032829	NaN	37.159	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1894800	+		61832	23919	43507	43569							0.034066271030496864
QEIYKPKY	8	Unmodified	_QEIYKPKY_					0	0	0			REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.78985	1067.56515	1.0895	0.00058264	0.36315	0.00019421	1.4526	0.00077684	534.789290354185	63.576	0.82353	63.63	63.338	64.161	0.054104	0.037998	0.00010229	NaN	37.159	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1974000	+		61833	23919	43507	43569							0.034066271030496864
QEIYKPKY	8	Unmodified	_QEIYKPKY_					0	0	0			REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	REV__SLCO1C1|p.I412*|1|0.39|ENSG00000139155|chr12:20732950-20732950|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.78985	1067.56515	-0.34716	-0.00018566	-0.38741	-0.00020718	-0.73457	-0.00039284	534.7894802854372	63.81	0.46246	63.582	63.404	63.866	-0.22773	-0.0098525	-0.00070049	NaN	37.159	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328720	+		61834	23919	43507	43569							0.034066271030496864
QEKGGQLRFGW	11	Unmodified	_QEKGGQLRFGW_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6|SYNPO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7554016113281	3	435.894799	1304.66257	1.4216	0.00061966	-0.52104	-0.00022712	0.90054	0.00039254	435.8944040209661	22.878	0.18685	22.687	22.617	22.804	-0.19117					6	3	2	0	0	0	0.024757	1	833	833		42.338	0	1	21091	+		61835	26668	43508	43570	66996	66996					0.022424090318963863
QEKLIVPM	8	Unmodified	_QEKLIVPM_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.3024597167969	2	479.275521	956.536489	-0.23012	-0.00011029	3.4866	0.0016711	3.2565	0.0015608	479.2771619003219	73.029	0.16743	72.831	72.71	72.878	-0.19811					5	3	2	0	0	0	0.027866	1	8559	8559		37.159	0	1	38114	+		61836	24526	43509	43571	66997	66997					0.05648186202256511
QEKLNNKLGE	10	Unmodified	_QEKLNNKLGE_					0	0	0			REV__ENSG00000166510|ENST00000591504|CCDC68	REV__ENSG00000166510|ENST00000591504|CCDC68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.2412719726562	2	586.817127	1171.6197	-1.6495	-0.00096794	4.4819	0.0026301	2.8324	0.0016621	586.819541885578	61.201	0.78341	61.025	60.714	61.497	-0.1761					27	18	2	0	0	0	0.03519	1	6898	6898		66.962	3.4281	1	233800	+		61837	26030	43510	43572	66998	66998					0.040755941837687715
QEKMQEIVL	9	Unmodified	_QEKMQEIVL_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.2882080078125	2	559.299724	1116.5849	0.4922	0.00027529	-4.0068	-0.002241	-3.5146	-0.0019657	559.2973740008914	50.997	0.57283	50.816	50.61	51.182	-0.18071					31	14	3	0	0	0	0.02435	1	5236	5236		42.396	8.2236	1	756270	+		61838	21127	43511	43573	66999	66999					0.03126635051489757
QEKNFLINY	9	Unmodified	_QEKNFLINY_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.3360595703125	2	584.803488	1167.59242	-0.77369	-0.00045246	0.36431	0.00021305	-0.40938	-0.00023941	584.8038811297821	73.47	1.008	73.28	72.675	73.683	-0.19027					29	24	2	0	0	0	0.024473	1	8634	8634		33.922	9.4024	1	132000			61839	1887	43512	43574	67000	67000					0.01533110643413238
QEKPSEEPL	9	Unmodified	_QEKPSEEPL_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7718505859375	2	528.764029	1055.5135	-1.0986	-0.00058091	-1.0489	-0.00055464	-2.1475	-0.0011355	528.7634002919917	47.931	0.76	47.931	47.653	48.413	0					34	22	2	0	0	0	0.024495	1	4856	4856		26.693	4.733	1	430400			61840	6567	43513	43575	67001	67001					-0.012031613815224773
QEKRNGDSHE	10	Unmodified	_QEKRNGDSHE_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.88775634765625	3	400.518169	1198.53268	0.10195	4.0834E-05	-3.7021	-0.0014827	-3.6001	-0.0014419	400.8507305935159	30.525	0.29272	30.534	30.331	30.624	0.0086689					9	6	3	0	0	0	0.03519	1	1961	1961		43.651	0	1	31011			61841	1870;18103	43514	43576	67002	67002					-0.058648120378848034
QEKVSKSKVGI	11	Unmodified	_QEKVSKSKVGI_					0	0	0		nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.8576049804688	2	601.858795	1201.70304	0.053475	3.2184E-05	-1.4722	-0.00088608	-1.4188	-0.0008539	601.8575176025487	102.33	0.46329	102.21	102.03	102.49	-0.12931					20	10	3	0	0	0	1.0183	1	12709	12709		32.751	2.4328	1	79147			61842	15991	43515	43577	67003	67003					0.11025330631650831
QEKVSKSKVGI	11	Unmodified	_QEKVSKSKVGI_					0	0	0		nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	601.858795	1201.70304	-1.6064	-0.00096682	-0.20677	-0.00012445	-1.8132	-0.0010913	601.8584195635106	102.24	0.399	102.24	102.08	102.48	0	-0.02294	0.00074411	NaN	32.751	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94967			61843	15991	43515	43577							0.11025330631650831
QEKVSKSKVGI	11	Unmodified	_QEKVSKSKVGI_					0	0	0		nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	601.858795	1201.70304	-0.58344	-0.00035115	-0.78154	-0.00047038	-1.365	-0.00082152	601.8578961663133	102.25	0.48026	102.26	102.02	102.5	0.0073471	-0.00034183	5.226E-05	NaN	32.751	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96771			61844	15991	43515	43577							0.11025330631650831
QEKVSKSKVGI	11	Unmodified	_QEKVSKSKVGI_					0	0	0		nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	601.858795	1201.70304	-1.0511	-0.00063262	-0.1568	-9.4372E-05	-1.2079	-0.00072699	601.8581731469783	102.33	0.4419	102.32	102.11	102.55	-0.0054474	0.064018	0.00080427	NaN	32.751	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107250			61845	15991	43515	43577							0.11025330631650831
QEKVSKSKVGI	11	Unmodified	_QEKVSKSKVGI_					0	0	0		nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-4|FUT10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	601.858795	1201.70304	-0.36111	-0.00021734	-1.3474	-0.00081093	-1.7085	-0.0010283	601.8577633480505	102.38	0.37439	102.25	102.04	102.41	-0.12666	-0.0056926	-0.00062885	NaN	32.751	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86620			61846	15991	43515	43577							0.11025330631650831
QELAAISYETN	11	Unmodified	_QELAAISYETN_					0	0	0		ENSG00000078246|ENST00000448120|TULP3;nc|ENSG00000078246|O75386-2|TULP3	ENSG00000078246|ENST00000448120|TULP3	ENSG00000078246|ENST00000448120|TULP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.26922607421875	3	413.534825	1237.58265	-0.00083801	-3.4655E-07	4.4544	0.001842	4.4535	0.0018417	413.5367032759361	27.766	1.0439	27.756	27.28	28.324	-0.010317					49	26	3	0	0	0	0.024741	1	1627	1627		34.501	1.7504	1	154100			61847	1632	43516	43578	67004	67004					-0.02664122152600612
QELGNKHAA	9	Unmodified	_QELGNKHAA_					0	0	0			REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.25164794921875	2	484.251423	966.488293	-0.43005	-0.00020825	0.66534	0.00032219	0.23529	0.00011394	484.251534122414	22.007	0.80707	21.932	21.651	22.458	-0.075296					47	16	4	0	0	0	0.4752	1	722	722		60.972	6.2073	1	319100	+		61848	37799	43517	43579	67005	67005					0.003708286065602806
QELGNKHAA	9	Unmodified	_QELGNKHAA_					0	0	0			REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.251423	966.488293	-0.54235	-0.00026263	1.325	0.00064165	0.7827	0.00037902	484.2516185471895	21.929	0.98973	21.929	21.63	22.619	0	0.023643	0.00047053	NaN	60.972	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322600	+		61849	37799	43517	43579							0.003708286065602806
QELGNKHAA	9	Unmodified	_QELGNKHAA_					0	0	0			REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	484.251423	966.488293	-0.43005	-0.00020825	0.66534	0.00032219	0.23529	0.00011394	484.251534122414	22.007	0.80707	21.932	21.651	22.458	-0.075296	0.026762	-0.00016839	NaN	60.972	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319100	+		61850	37799	43517	43579							0.003708286065602806
QELGNKHAA	9	Unmodified	_QELGNKHAA_					0	0	0			REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	REV__ZGRF1|p.E1852K|1|0.14|ENSG00000138658|chr4:112547329-112547329|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.251423	966.488293	-1.1565	-0.00056006	1.4107	0.00068311	0.25411	0.00012306	484.2519508326267	21.783	0.67813	21.855	21.684	22.362	0.071487	-0.050405	0.00055345	NaN	60.972	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53233	+		61851	37799	43517	43579							0.003708286065602806
QELHAQLKQF	10	Unmodified	_QELHAQLKQF_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.55938720703125	3	414.559417	1240.65642	-0.78615	-0.00032591	0.448	0.00018572	-0.33815	-0.00014018	414.5595911842021	26.653	1.2873	26.417	26.098	27.385	-0.23603					82	31	4	0	0	0	0.88978	1	1410	1410		54.722	3.1946	1	5855800	+		61852	24519	43518	43580	67006	67006					0.04571890800343681
QELLERRKG	9	Unmodified	_QELLERRKG_					0	0	0		nc|ENSG00000143375|Q9P2M7-2|CGN;ENSG00000143375|ENST00000271636|CGN	nc|ENSG00000143375|Q9P2M7-2|CGN	nc|ENSG00000143375|Q9P2M7-2|CGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8275146484375	2	564.827829	1127.64111	-0.41661	-0.00023532	0.14255	8.0517E-05	-0.27406	-0.0001548	564.8277874603832	30.991	0.71853	30.806	30.49	31.208	-0.18503					47	17	4	0	0	0	0.77768	1	2016	2016		40.778	3.6191	1	1260300			61853	5642	43519	43581	67007	67007					0.08239024003160011
QELLLRVF	8	Unmodified	_QELLLRVF_					0	0	0			REV__ENSG00000230778|ENST00000434396|ANKRD63	REV__ENSG00000230778|ENST00000434396|ANKRD63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3060302734375	2	509.30821	1016.60187	-1.5235	-0.00077591	-2.7579	-0.0014046	-4.2813	-0.0021805	509.30666606233405	91.952	1.3811	91.803	91.353	92.734	-0.1487					100	32	4	0	0	0	1.0516	1	11287	11287		29.15	0.89528	1	3302400	+		61854	28894	43520	43582	67008	67008					0.09422923719603205
QELLMELL	8	Unmodified	_QELLMELL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.78765869140625	2	494.772811	987.531069	-0.95243	-0.00047124	2.3295	0.0011526	1.3771	0.00068133	494.77432470967403	26.019	0.3119	25.783	25.636	25.948	-0.23603					12	7	2	0	0	0	0.027866	1	1279	1279		79.939	8.5613	1	122530	+		61855	22073	43521	43583	67009	67009					0.0368046261978634
QELQRIQKWV	10	Unmodified	_QELQRIQKWV_					0	0	0		nc|ENSG00000187048|Q02928-2|CYP4A11;ENSG00000187048|ENST00000310638|CYP4A11	nc|ENSG00000187048|Q02928-2|CYP4A11	nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.242919921875	3	443.254216	1326.74082	-1.0399	-0.00046096	2.2441	0.0009947	1.2041	0.00053373	443.2553994301949	38.996	1.1643	39.02	38.361	39.526	0.023727					46	31	2	0	0	0	0.03519	1	3172	3172		19.263	5.7547	1	188800			61856	9604	43522	43584	67010	67010					0.09051841617110767
QELRKYFK	8	Unmodified	_QELRKYFK_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF;SUPT5H|p.G648Afs*7|1|0.45|ENSG00000196235|chr19:39471719-39471719|G/-|frameshift_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.316162109375	2	556.316566	1110.61858	0.24107	0.00013411	-0.55491	-0.00030871	-0.31384	-0.0001746	556.3161671254682	22.591	0.59838	22.402	22.102	22.7	-0.18894					27	12	3	0	0	0	0.95679	1	833	833		44.117	0	1	711500			61857	9842	43523	43585	67011	67011					0.0676942460556802
QELSRQTAF	9	Unmodified	_QELSRQTAF_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.3270263671875	2	540.277638	1078.54072	-0.53566	-0.00028941	3.809	0.0020579	3.2733	0.0017685	540.7813598764443	49.238	1.118	48.959	48.429	49.547	-0.27977					82	29	4	0	0	0	0.024389	1	4896	4896		51.193	7.5666	1	1297400	+		61858	26761	43524	43586	67012	67012					0.004593669495079666
QELVLNQL	8	Unmodified	_QELVLNQL_					0	0	0		nc|ENSG00000214367|Q68CZ6-2|HAUS3;ENSG00000214367|ENST00000443786|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7745361328125	2	478.7742	955.533846	0.16026	7.6729E-05	-0.029013	-1.3891E-05	0.13125	6.2839E-05	478.774129135444	31.407	1.5005	31.166	30.753	32.253	-0.24109					90	36	4	0	0	0	0.2917	2	2081	2081;2094		115.46	16.83	1	7445600			61859	10552	43525	43587	67013;67014	67013					0.054300540689382615
QELVLNQL	8	Unmodified	_QELVLNQL_					0	0	0		nc|ENSG00000214367|Q68CZ6-2|HAUS3;ENSG00000214367|ENST00000443786|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7740173339844	2	478.7742	955.533846	-0.19848	-9.5027E-05	0.058004	2.7771E-05	-0.14048	-6.7256E-05	478.77420061038595	31.364	1.5626	31.211	30.887	32.449	-0.15231					105	38	4	0	0	0	0.2677	2	2080	2056;2080		125.81	8.665	1	10664000			61860	10552	43525	43587	67015;67016	67016					0.054300540689382615
QELVNQLL	8	Unmodified	_QELVNQLL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.77410888671875	2	478.7742	955.533846	0.16026	7.6729E-05	-0.029013	-1.3891E-05	0.13125	6.2839E-05	478.774129135444	31.407	1.5005	31.166	30.753	32.253	-0.24109					90	36	4	0	0	0	0.50239	1	2107	2107		85.359	3.119	1	7445600	+		61861	23178	43526	43588	67017	67017					0.054300540689382615
QELVQGAL	8	Unmodified	_QELVQGAL_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	429.24017333984375	2	429.239993	856.465432	0.0064954	2.7881E-06	0.48692	0.000209	0.49341	0.00021179	429.2400633464504	31.361	1.0679	31.209	30.928	31.996	-0.15231					73	26	5	0	0	0	0.46709	1	2076	2076		88.643	3.2834	1	2786000	+		61862	26956	43527	43589	67018	67018					0.03145809489092244
QELVQGAL	8	Unmodified	_QELVQGAL_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	429.239993	856.465432	0.18454	7.9211E-05	0.57342	0.00024613	0.75795	0.00032534	429.24007422454645	31.41	0.94361	31.169	30.834	31.778	-0.24109	0.0058155	3.8149E-05	NaN	88.643	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1421600	+		61863	26956	43527	43589							0.03145809489092244
QELVQGAL	8	Unmodified	_QELVQGAL_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	429.239993	856.465432	-0.0015745	-6.7582E-07	0.52423	0.00022502	0.52265	0.00022434	429.24006357615724	31.298	0.95454	31.113	30.824	31.779	-0.18503	-0.050981	-4.0811E-06	NaN	88.643	69	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2139800	+		61864	26956	43527	43589							0.03145809489092244
QELVQGAL	8	Unmodified	_QELVQGAL_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	429.239993	856.465432	0.0064954	2.7881E-06	0.48692	0.000209	0.49341	0.00021179	429.2400633464504	31.361	1.0679	31.209	30.928	31.996	-0.15231	0.045166	-3.611E-05	NaN	88.643	73	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2786000	+		61865	26956	43527	43589							0.03145809489092244
QELYHKVL	8	Unmodified	_QELYHKVL_					0	0	0			REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.313232421875	2	515.290017	1028.56548	0.10754	5.5417E-05	-1.1656	-0.00060061	-1.058	-0.00054519	515.2856270599249	88.252	0.32836	88.115	87.862	88.19	-0.13744					13	7	3	0	0	0	0.027866	1	10717	10717		45.952	0	1	65200	+		61866	22213	43528	43590	67019	67019					0.05234046822897653
QEMLYNFY	8	Unmodified	_QEMLYNFY_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.78759765625	2	554.244418	1106.47428	-0.27229	-0.00015091	-0.16557	-9.1766E-05	-0.43786	-0.00024268	554.7476172413375	82.226	0.12653	82.252	82.189	82.315	0.025711					4	2	2	0	0	0	0.027866	1	10192	10192		25.45	0	1	56567			61867	7835	43529	43591	67020	67020					-0.07469584936757201
QEMPKYTQK	9	Unmodified	_QEMPKYTQK_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|52|1|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|52|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.32763671875	2	576.789524	1151.56449	-1.1317	-0.00065276	-3.9466	-0.0022763	-5.0783	-0.0029291	576.7873008285925	37.781	0.72888	37.563	36.989	37.718	-0.21849					33	18	2	0	0	0	0.0245	1	3031	3031		29.17	0	1	171930	+		61868	36278	43530	43592	67021	67021					-0.0052253560832014045
QEMPLLPINID	11	Unmodified	_QEMPLLPINID_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8410034179688	2	641.839213	1281.66387	-1.7534	-0.0011254	3.8881	0.0024955	2.1347	0.0013701	641.8418572607031	110.18	0.37907	110.06	109.87	110.25	-0.12524					38	15	4	0	0	0	0.97926	1	13544	13544		41.427	5.109	1	180670	+		61869	24908	43531	43593	67022	67022					0.03430862285790681
QENKRRRHDSS	11	Unmodified	_QENKRRRHDSS_					0	0	0		ENSG00000272391|ENST00000615331|POM121C;nc|ENSG00000272391|A8CG34|POM121C;nc|ENSG00000196313|Q96HA1-2|POM121;nc|ENSG00000196313|Q96HA1-3|POM121;ENSG00000196313|ENST00000434423|POM121	ENSG00000272391|ENST00000615331|POM121C	ENSG00000272391|ENST00000615331|POM121C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7718811035156	3	471.5749	1411.70287	-0.060009	-2.8299E-05	-2.0754	-0.0009787	-2.1354	-0.001007	471.57395645130197	38.643	0.3076	38.544	38.358	38.665	-0.098755					10	7	2	0	0	0	0.024726	1	3257	3257		32.034	0.96598	1	51834			61870	11014	43532	43594	67023	67023					0.013487236843957362
QENLELVLF	9	Unmodified	_QENLELVLF_					0	0	0			REV__ENST00000581166.5_1_17:56423483-56423582:-|nuORF	REV__ENST00000581166.5_1_17:56423483-56423582:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.32470703125	2	552.800414	1103.58628	1.069	0.00059092	-3.2747	-0.0018102	-2.2057	-0.0012193	552.7984279838628	20.12	0.33398	19.92	19.701	20.035	-0.2001					10	6	2	0	0	0	0.0245	1	502	502		36.447	0.82846	1	46055	+		61871	35527	43533	43595	67024	67024					0.03862592411906007
QENRQKRTQ	9	Unmodified	_QENRQKRTQ_					0	0	0			REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.2640991210938	2	594.315617	1186.61668	-0.55052	-0.00032718	3.2074	0.0019062	2.6568	0.001579	594.8172257656289	47.176	0.17675	46.906	46.801	46.977	-0.26939					6	4	2	0	0	0	0.024523	1	4587	4587		29.15	4.9468	1	89691	+		61872	19084	43534	43596	67025	67025					0.030837638496677755
QENSVDAAKP	10	Unmodified	_QENSVDAAKP_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	2	529.759278	1057.504	-1.2039	-0.00063779	-0.19086	-0.00010111	-1.3948	-0.0007389	529.7588524159557	73.31	0.25293	73.31	73.146	73.399	0					12	6	3	0	0	0	0.03519	1	8936	8936		29.17	17.659	1	419770			61873	4373	43535	43597	67026	67026					-0.022449296670401964
QENTLKYEY	9	Unmodified	_QENTLKYEY_					0	0	0		ENSG00000178965|ENST00000326665|ERICH3;nc|ENSG00000178965|Q5RHP9-3|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.2640991210938	2	594.282586	1186.55062	-0.56863	-0.00033793	3.5556	0.0021131	2.987	0.0017751	594.2849904347119	47.16	0.24786	46.891	46.73	46.977	-0.26939					10	6	2	0	0	0	0.024523	1	4587	4587		29.15	19.444	1	101140			61874	8850	43536	43598	67027	67027					-0.0351948983575312
QEPERDYENE	10	Unmodified	_QEPERDYENE_					0	0	0		nc|ENSG00000173068|Q6ZN30-2|BNC2;ENSG00000173068|ENST00000380672|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	nc|ENSG00000173068|Q6ZN30-2|BNC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.88140869140625	3	436.849473	1307.52659	0.3773	0.00016482	3.7602	0.0016427	4.1375	0.0018075	436.8510596585709	39.409	0.1017	39.409	39.323	39.425	0					4	2	2	0	0	0	0.03519	1	3385	3385		79.489	1.9558	1	56880			61875	8337	43537	43599	67028	67028					-0.11487375060073646
QEPKGIFR	8	Unmodified	_QEPKGIFR_					0	0	0		CDH13-HSBP1|3|fusion;CDH13-HSBP1|4|fusion;nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13	CDH13-HSBP1|3|fusion	CDH13-HSBP1|3|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7629089355469	2	487.774534	973.534515	-0.36667	-0.00017885	0.28816	0.00014056	-0.078506	-3.8293E-05	487.7741424510109	37.374	0.64413	37.406	36.918	37.563	0.032269					26	16	2	0	0	0	0.027866	1	2941	2941		29.15	0	1	145070			61876	238	43538	43600	67029	67029					0.046688935086763195
QEPRSQPWHE	10	Unmodified	_QEPRSQPWHE_					0	0	0			REV__ENST00000511828.1_1_4:100575555-100575762:-|nuORF	REV__ENST00000511828.1_1_4:100575555-100575762:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.8885498046875	3	431.870542	1292.5898	-0.65576	-0.0002832	0.48198	0.00020815	-0.17378	-7.505E-05	431.8706793164059	21.652	0.53197	21.439	21.266	21.798	-0.2128					24	10	4	0	0	0	0.03519	1	709	709		32.751	5.1066	1	63571	+		61877	34127	43539	43601	67030	67030					-0.04479344761557513
QEPSALARLL	10	Unmodified	_QEPSALARLL_					0	0	0			REV__nc|ENSG00000166925|Q9Y3Q8-2|TSC22D4	REV__nc|ENSG00000166925|Q9Y3Q8-2|TSC22D4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3182373046875	2	549.319306	1096.62406	0.75373	0.00041404	-3.311	-0.0018188	-2.5573	-0.0014048	549.3174448773781	99.74	0.56215	99.616	99.234	99.796	-0.12458					46	14	4	0	0	0	1.0616	1	12378	12378		37.812	1.3648	1	437000	+		61878	26084	43540	43602	67031	67031					0.0796110339738334
QEPSQYLQN	9	Unmodified	_QEPSQYLQN_					0	0	0		nc|ENSG00000003147|Q05084-2|ICA1	nc|ENSG00000003147|Q05084-2|ICA1	nc|ENSG00000003147|Q05084-2|ICA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3034057617188	2	553.759278	1105.504	-0.5351	-0.00029631	-4.4119	-0.0024431	-4.947	-0.0027394	553.7572893863149	36.088	0.7625	36.126	35.816	36.579	0.038044					41	21	4	0	0	0	0.023817	1	2791	2791		60.972	21.719	1	201780			61879	18027	43541	43603	67032	67032					-0.04452929667036187
QEPWRANS	8	Unmodified	_QEPWRANS_					0	0	0		ENST00000517550.1_1_7:27161590-27163258:+|nuORF	ENST00000517550.1_1_7:27161590-27163258:+|nuORF	ENST00000517550.1_1_7:27161590-27163258:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.25311279296875	2	494.235773	986.456993	-0.79489	-0.00039286	0.070603	3.4894E-05	-0.72429	-0.00035797	494.2349423691993	57.185	0.24827	57.017	56.823	57.071	-0.1672					9	6	2	0	0	0	0.027866	1	6203	6203		21.96	9.753	1	205330			61880	15914	43542	43604	67033	67033					-0.03677744427534435
QEQAAKLAQ	9	Unmodified	_QEQAAKLAQ_					0	0	0			REV__ENSG00000104941|ENST00000221538|RSPH6A	REV__ENSG00000104941|ENST00000221538|RSPH6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.28765869140625	2	493.766906	985.519259	-0.94167	-0.00046496	0.8878	0.00043837	-0.053866	-2.6597E-05	493.7673317784311	21.832	0.48554	21.904	21.684	22.17	0.071487					12	9	2	0	0	0	0.024397	1	685	685		24.519	0	1	35590	+		61881	21483	43543	43605	67034	67034					0.025919819207956607
QEQHKVEEPR	10	Unmodified	_QEQHKVEEPR_					0	0	0			REV__ENSG00000139970|ENST00000267484|RTN1	REV__ENSG00000139970|ENST00000267484|RTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7297668457031	3	427.217831	1278.63166	0.049118	2.0984E-05	-2.3836	-0.0010183	-2.3345	-0.00099733	427.2163994346011	29.208	0.80474	29.059	28.572	29.377	-0.14952					45	18	5	0	0	0	0.03519	1	1686	1686		20.03	9.4437	1	406890	+		61882	23975	43544	43606	67035	67035					0.0034921092699278233
QEQKKANSLA	10	Unmodified	_QEQKKANSLA_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.7589111328125	2	558.80402	1115.59349	-0.67779	-0.00037875	-1.8055	-0.0010089	-2.4833	-0.0013877	558.8029110386348	27.011	0.34176	26.998	26.828	27.17	-0.012983					11	8	2	0	0	0	0.03519	1	1407	1407		42.864	3.6114	1	56604			61883	1426	43545	43607	67036	67036					0.04031325012351772
QEQMAKVE	8	Unmodified	_QEQMAKVE_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.7365417480469	2	481.734217	961.453881	5.6029	0.0026991	-1.5609	-0.00075196	4.042	0.0019471	481.73330067700635	16.948	0.86658	16.694	16.31	17.176	-0.25378					32	24	2	0	0	0	1.0516	1	111	111		29.15	0	1	30058	+		61884	21408	43546	43608	67037	67037					-0.028387555965423417
QEQPFKWHDL	10	Unmodified	_QEQPFKWHDL_					0	0	0			REV__ENSG00000223443|ENST00000333796|USP17L2;REV__ENSG00000237038|ENST00000527080|USP17L8	REV__ENSG00000237038|ENST00000527080|USP17L8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2433166503906	3	443.219172	1326.63569	-0.76389	-0.00033857	-2.1563	-0.00095572	-2.9202	-0.0012943	443.2181839403958	38.518	0.55045	38.518	38.247	38.797	0					34	13	3	0	0	0	0.03519	1	3205	3205		20.03	0.7678	1	574230	+		61885	28847;28873	43547	43609	67038	67038					-0.014566995792847592
QEQQTGLL	8	Unmodified	_QEQQTGLL_					0	0	0			REV__ENST00000480609.1_1_13:111158832-111160640:+|nuORF	REV__ENST00000480609.1_1_13:111158832-111160640:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2736511230469	2	458.740357	915.46616	-0.27558	-0.00012642	1.6849	0.00077293	1.4093	0.00064652	458.7422584657874	25.865	0.2298	25.694	25.542	25.771	-0.17078					6	5	2	0	0	0	0.027866	1	1273	1273		28.254	1.5614	1	30287	+		61886	33428	43548	43610	67039	67039					0.005046041381433497
QEQQTGLL	8	Unmodified	_QEQQTGLL_					0	0	0			REV__ENST00000480609.1_1_13:111158832-111160640:+|nuORF	REV__ENST00000480609.1_1_13:111158832-111160640:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.740357	915.46616	-0.23046	-0.00010572	1.9943	0.00091486	1.7638	0.00080914	458.7412005640745	26.024	0.75744	26.024	25.486	26.243	0	0.16504	8.5319E-05	NaN	20.482	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58284	+		61887	33428	43548	43610							0.005046041381433497
QERATAQVLLD	11	Unmodified	_QERATAQVLLD_					0	0	0		PAK6|p.E651V|1|0.22|ENSG00000137843|chr15:40276000-40276000|A/T|missense_variant	PAK6|p.E651V|1|0.22|ENSG00000137843|chr15:40276000-40276000|A/T|missense_variant	PAK6|p.E651V|1|0.22|ENSG00000137843|chr15:40276000-40276000|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.3362426757812	2	622.335684	1242.65681	0.86696	0.00053954	0.57632	0.00035866	1.4433	0.0008982	622.3359965526924	109.95	0.83836	109.95	109.77	110.61	0					74	26	4	0	0	0	1.0327	1	13974	13974		29.551	0.38069	1	2123200			61888	18937	43549	43611	67040	67040					0.04519265729572908
QERCNGPA	8	Unmodified	_QERCNGPA_					0	0	0		ENST00000418945.1_1_6:99872961-99873069:+|nuORF	ENST00000418945.1_1_6:99872961-99873069:+|nuORF	ENST00000418945.1_1_6:99872961-99873069:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.77154541015625	2	437.695426	873.3763	0.22264	9.7449E-05	-4.2452	-0.0018581	-4.0226	-0.0017607	437.6933931591352	22.54	0.27648	22.351	22.236	22.512	-0.18894					7	5	2	0	0	0	0.027866	1	829	829		3.41	0	1	15784			61889	13947	43550	43612	67041	67041					-0.0654534874207684
QERKEVPLAF	10	Unmodified	_QERKEVPLAF_					0	0	0			REV__ENST00000306999.6_1_7:16642130-16644431:-|nuORF	REV__ENST00000306999.6_1_7:16642130-16644431:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.8368530273438	2	608.837862	1215.66117	-1.0376	-0.00063172	-0.50871	-0.00030972	-1.5463	-0.00094144	608.8374403487405	109.72	0.52835	109.72	109.52	110.05	0.0059204					63	25	4	0	0	0	1.1307	1	13848	13848		26.693	3.6504	1	5115400	+		61890	30129	43551	43613	67042	67042					0.061967749431460106
QERKKLQV	8	Unmodified	_QERKKLQV_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2984619140625	2	514.81419	1027.61383	-0.1219	-6.2754E-05	-0.11043	-5.6853E-05	-0.23233	-0.00011961	514.8142634970507	95.461	0.99744	95.324	94.938	95.936	-0.13689					29	22	2	0	0	0	0.027866	1	11775	11775		12.207	0	1	105410			61891	7670	43552	43614	67043	67043					0.1011254046279646
QERSDQVIK	9	Unmodified	_QERSDQVIK_					0	0	0			REV__ENST00000533735.1_1_6:150322445-150326263:-|nuORF	REV__ENST00000533735.1_1_6:150322445-150326263:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.79833984375	2	551.796195	1101.57784	-0.18273	-0.00010083	4.085	0.0022541	3.9023	0.0021533	551.7983495070562	18.36	0.49307	18.228	18.056	18.549	-0.13147					19	9	3	0	0	0	0.72875	1	267	267		44.117	0	1	245100	+		61892	34618	43553	43615	67044	67044					0.031110384952853565
QERSDQVIK	9	Unmodified	_QERSDQVIK_					0	0	0			REV__ENST00000533735.1_1_6:150322445-150326263:-|nuORF	REV__ENST00000533735.1_1_6:150322445-150326263:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	551.796195	1101.57784	2.8275	0.0015602	0.83793	0.00046237	3.6655	0.0020226	551.7967619970995	18.156	0.39271	18.156	17.94	18.333	0	-0.036064	-0.0030591	NaN	44.117	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214510	+		61893	34618	43553	43615							0.031110384952853565
QERTLAKVTD	10	Unmodified	_QERTLAKVTD_					0	0	0			REV__ENST00000549935.6_1_12:54107863-54119026:-|nuORF	REV__ENST00000549935.6_1_12:54107863-54119026:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	581.2765502929688	2	580.817127	1159.6197	-0.60052	-0.00034879	-2.8843	-0.0016752	-3.4848	-0.002024	581.3153100449096	86.476	0.21695	86.431	86.293	86.51	-0.045105					6	4	2	0	0	0	0.03519	1	10817	10817		37.812	1.3648	1	26715	+		61894	19948	43554	43616	67045	67045					0.04627594183830297
QESKTHQCLH	10	Unmodified	_QESKTHQCLH_					0	0	0		nc|ENSG00000005889|P17010-2|ZFX;nc|ENSG00000067646|P08048-2|ZFY;nc|ENSG00000067646|P08048-3|ZFY;ENSG00000067646|ENST00000155093|ZFY;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-2|ZFX	nc|ENSG00000005889|P17010-2|ZFX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.90655517578125	3	404.192628	1209.55605	0.82206	0.00033227	4.3433	0.0017555	5.1654	0.0020878	404.1947311980329	22.591	0.32746	22.591	22.338	22.665	0					11	6	2	0	0	0	0.03519	1	812	812		59.931	6.8418	1	13723			61895	778	43555	43617	67046	67046					-0.040340895249300956
QESLQAILN	9	Unmodified	_QESLQAILN_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8306579589844	2	508.274564	1014.53457	-0.095335	-4.8457E-05	3.5059	0.0017819	3.4105	0.0017335	508.275279213674	46.912	0.74868	46.642	46.452	47.201	-0.26939					26	20	2	0	0	0	0.023655	1	4547	4547		60.118	0	1	184600			61896	4256;18250	43556	43618	67047	67047					0.02788848718000736
QESRPFSVD	9	Unmodified	_QESRPFSVD_					0	0	0		ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3046875	2	532.753995	1063.49344	-0.63391	-0.00033772	-2.7056	-0.0014414	-3.3395	-0.0017791	533.2548895322603	61.302	0.67281	61.075	60.48	61.153	-0.22663					19	17	2	0	0	0	0.024495	1	7033	7033		26.693	0	1	122420			61897	2920	43557	43619	67048	67048					-0.035769123214549836
QESRRRAAL	9	Unmodified	_QESRRRAAL_					0	0	0		nc|ENSG00000122477|Q96DD0-2|LRRC39	nc|ENSG00000122477|Q96DD0-2|LRRC39	nc|ENSG00000122477|Q96DD0-2|LRRC39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3311157226562	2	543.809971	1085.60539	-1.5973	-0.00086862	3.4057	0.0018521	1.8084	0.00098345	543.8118434751291	44.883	0.68975	44.734	44.39	45.079	-0.1488					65	19	4	0	0	0	0.024397	1	4287	4287		47.657	1.7054	1	2616000			61898	18229	43558	43620	67049	67049					0.06600986546163767
QETAYRTQV	9	Unmodified	_QETAYRTQV_					0	0	0		nc|ENSG00000107593|Q9P0L9-4|PKD2L1;PKD2L1|p.R697Efs*28|1|0.24|ENSG00000107593|chr10:100290439-100290439|G/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.826171875	2	548.275095	1094.53564	-0.51208	-0.00028076	-3.0292	-0.0016608	-3.5413	-0.0019416	548.2732063421196	95.256	0.69794	95.104	94.839	95.537	-0.15186					33	15	3	0	0	0	0.024397	1	11756	11756		39.253	0	1	657110			61899	2845	43559	43621	67050	67050					-0.007849369131008643
QETFYSHMKF	10	Unmodified	_QETFYSHMKF_					0	0	0		ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7659606933594	3	439.869262	1316.58596	-0.32556	-0.00014321	-0.76322	-0.00033572	-1.0888	-0.00047892	440.2035484052897	37.603	0.19862	37.41	37.309	37.508	-0.193					5	4	2	0	0	0	0.03519	1	3030	3030		21.686	0	1	33822			61900	5980	43560	43622	67051	67051					-0.05967150579635927
QETLVVHKG	9	Unmodified	_QETLVVHKG_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.27734375	2	505.785099	1009.55564	-0.18296	-9.2539E-05	1.5416	0.00077974	1.3587	0.0006872	505.78473060687213	54.86	0.39819	54.629	54.387	54.785	-0.23087					14	10	2	0	0	0	0.024288	1	5853	5853		52.937	8.8199	1	159560	+		61901	28400	43561	43623	67052	67052					0.051248588175326404
QETLVVHKG	9	Unmodified	_QETLVVHKG_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.785099	1009.55564	-0.65404	-0.0003308	0.8522	0.00043103	0.19816	0.00010023	505.7852835607192	54.701	0.65578	54.701	54.393	55.049	0	0.064055	0.00050354	NaN	52.937	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963480	+		61902	28400	43561	43623							0.051248588175326404
QETLVVHKG	9	Unmodified	_QETLVVHKG_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.785099	1009.55564	-0.21587	-0.00010918	2.1234	0.001074	1.9075	0.00096478	505.7849892362885	54.8	1.0728	54.649	54.375	55.447	-0.15036	0.012537	0.0017894	NaN	52.937	60	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124600	+		61903	28400	43561	43623							0.051248588175326404
QETLVVHKG	9	Unmodified	_QETLVVHKG_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.785099	1009.55564	0.48108	0.00024332	-0.54127	-0.00027377	-0.060197	-3.0447E-05	505.7847831380739	54.47	0.65474	54.568	54.328	54.982	0.098015	-0.068888	-0.00090605	NaN	52.937	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1187400	+		61904	28400	43561	43623							0.051248588175326404
QETMRDHL	8	Unmodified	_QETMRDHL_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.313232421875	2	515.242741	1028.47093	0.091368	4.7077E-05	3.2104	0.0016541	3.3018	0.0017012	515.2440845161395	88.057	0.11892	87.92	87.862	87.981	-0.13744					4	2	2	0	0	0	0.027866	1	10717	10717		40.573	12.318	1	27616	+		61905	27215	43562	43624	67053	67053					-0.04216834990734242
QETSAKVRAP	10	Unmodified	_QETSAKVRAP_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7821655273438	2	543.798737	1085.58292	-2.2698	-0.0012343	1.6176	0.00087966	-0.65216	-0.00035464	543.7995835476518	38.561	0.47915	38.588	38.331	38.81	0.027275					22	12	3	0	0	0	0.03519	1	3198	3198		62.107	0	1	410470	+		61906	20097	43563	43625	67054	67054					0.0435534235787145
QEVFRQKFR	9	Unmodified	_QEVFRQKFR_					0	0	0		nc|ENSG00000186814|Q86W11-3|ZSCAN30;ENSG00000186814|ENST00000333206|ZSCAN30	nc|ENSG00000186814|Q86W11-3|ZSCAN30	nc|ENSG00000186814|Q86W11-3|ZSCAN30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.87677001953125	3	413.231523	1236.67274	-0.35314	-0.00014593	2.4828	0.001026	2.1296	0.00088003	413.2326814829283	30.328	0.82189	30.328	29.936	30.758	0					33	19	3	0	0	0	0.024397	1	1885	1885		18.262	0	1	504840			61907	9578	43564	43626	67055	67055					0.06387016757116726
QEVHQNLTL	9	Unmodified	_QEVHQNLTL_					0	0	0			REV__ENSG00000171794|ENST00000304477|UTF1	REV__ENSG00000171794|ENST00000304477|UTF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.3021240234375	2	541.285463	1080.55637	-0.014396	-7.7923E-06	-3.7956	-0.0020545	-3.81	-0.0020623	541.282740165982	56.792	0.30526	56.59	56.404	56.71	-0.20209					13	7	2	0	0	0	0.024447	1	6157	6157		19.104	4.9664	1	263840	+		61908	26601	43565	43627	67056	67056					0.019316534665676954
QEVKVERVD	9	Unmodified	_QEVKVERVD_					0	0	0			REV__ENSG00000012963|ENST00000013070|UBR7	REV__ENSG00000012963|ENST00000013070|UBR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.30615234375	2	551.29857	1100.58259	-0.45154	-0.00024893	2.6342	0.0014522	2.1826	0.0012033	551.8032051975637	52.486	0.39969	52.486	52.351	52.75	0					13	9	2	0	0	0	0.024418	1	5621	5621		54.776	39.135	1	97684	+		61909	19949	43566	43628	67057	67057					0.03631922638055585
QEVKVERVD	9	Unmodified	_QEVKVERVD_					0	0	0			REV__ENSG00000012963|ENST00000013070|UBR7	REV__ENSG00000012963|ENST00000013070|UBR7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.29857	1100.58259	-0.3835	-0.00021142	3.1379	0.0017299	2.7544	0.0015185	551.298155679341	52.394	0.35217	52.486	52.321	52.674	0.091942	0.00029994	0.00022782	NaN	56.434	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70068	+		61910	19949	43566	43628							0.03631922638055585
QEVKVQTAAL	10	Unmodified	_QEVKVQTAAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3316650390625	2	543.811313	1085.60807	-0.97396	-0.00052965	0.14209	7.7272E-05	-0.83187	-0.00045238	543.811495816708	44.752	0.66187	44.789	44.476	45.138	0.0369					63	18	4	0	0	0	0.03519	1	4237	4237		49.536	10.283	1	2205000			61911	9548	43567	43629	67058	67058					0.06869397160471635
QEVLIRTD	8	Unmodified	_QEVLIRTD_					0	0	0		nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	nc|ENSG00000112584|Q96EK7-2|FAM120B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7715759277344	2	487.269281	972.52401	-0.54888	-0.00026745	-0.33889	-0.00016513	-0.88778	-0.00043259	487.2689599931318	57.06	0.50405	56.893	56.676	57.18	-0.1672					22	13	2	0	0	0	0.027866	1	6181	6181		18.324	0	1	458310			61912	3223	43568	43630	67059	67059					0.03664866063570571
QEVLKMMGQ	9	Unmodified	_QEVLKMMGQ_					0	0	0			REV__ENST00000508482.5_1_17:48797176-48828101:+|nuORF	REV__ENST00000508482.5_1_17:48797176-48828101:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7837524414062	2	532.26737	1062.52019	-0.65655	-0.00034946	-1.2907	-0.00068698	-1.9472	-0.0010364	532.767488261764	56.892	0.26584	56.727	56.675	56.941	-0.16431					11	7	2	0	0	0	0.024447	1	6337	6337		40.778	3.6191	1	149610	+		61913	21767	43569	43631	67060	67060					-0.00857263026136934
QEVRPRRW	8	Unmodified	_QEVRPRRW_					0	0	0		ENSG00000185686|ENST00000405655|PRAME;PRAME|p.L119R|1|0.15|ENSG00000185686|chr22:22550323-22550323|A/C|missense_variant	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.7565307617188	2	563.815056	1125.61556	-0.88752	-0.0005004	1.5626	0.00088102	0.67508	0.00038062	563.8167022036286	64.549	0.63821	64.286	64.047	64.686	-0.2626					21	16	2	0	0	0	0.027866	1	7569	7569		26.796	0	1	497650			61914	9464	43570	43632	67061	67061					0.05777594271421549
QEVWLSSV	8	Unmodified	_QEVWLSSV_					0	0	0			REV__ENST00000462389.1_1_20:33231889-33264889:-|nuORF	REV__ENST00000462389.1_1_20:33231889-33264889:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.24468994140625	2	474.245275	946.475997	0.14195	6.732E-05	0.037148	1.7617E-05	0.1791	8.4937E-05	474.2451546604665	45.619	1.0865	45.663	45.247	46.334	0.043877					77	31	4	0	0	0	0.44658	2	4406	4393;4406		90.777	8.4716	1	3910300	+		61915	32901	43571	43633	67062;67063	67063					0.0006179214352641793
QEWHRLDP	8	Unmodified	_QEWHRLDP_					0	0	0		ENSG00000147117|ENST00000377073|ZNF157	ENSG00000147117|ENST00000377073|ZNF157	ENSG00000147117|ENST00000377073|ZNF157	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3029174804688	2	540.764697	1079.51484	-0.53783	-0.00029084	-0.13817	-7.4719E-05	-0.676	-0.00036556	540.7645832267546	56.812	0.61173	56.645	56.284	56.896	-0.1672					55	15	5	0	0	0	0.027866	1	6168	6168		44.117	0	1	1872000			61916	5932	43572	43634	67064	67064					-0.0217348250212126
QEWHRLDP	8	Unmodified	_QEWHRLDP_					0	0	0		ENSG00000147117|ENST00000377073|ZNF157	ENSG00000147117|ENST00000377073|ZNF157	ENSG00000147117|ENST00000377073|ZNF157	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3021240234375	2	540.764697	1079.51484	-0.60203	-0.00032556	0.17155	9.2766E-05	-0.43048	-0.00023279	540.7647691820071	56.943	0.64896	56.719	56.386	57.035	-0.22479					45	16	4	0	0	0	0.027866	1	6167	6167		27.882	1.1893	1	1802400			61917	5932	43572	43634	67065	67065					-0.0217348250212126
QEWIYMPP	8	Unmodified	_QEWIYMPP_					0	0	0			REV__ENSG00000163539|ENST00000682230|CLASP2	REV__ENSG00000163539|ENST00000682230|CLASP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.767822265625	2	532.249503	1062.48445	-0.77194	-0.00041087	-0.072445	-3.8559E-05	-0.84439	-0.00044942	532.2500851498862	23.233	0.15569	23.31	23.195	23.351	0.076239					5	3	2	0	0	0	0.027866	1	848	848		19.36	1.0356	1	12860	+		61918	25589	43573	43635	67066	67066					-0.04428977211500751
QEWLQVTL	8	Unmodified	_QEWLQVTL_					0	0	0			REV__ENST00000359889.9_1_X:153734696-153735086:-|nuORF	REV__ENST00000359889.9_1_X:153734696-153735086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.784912109375	2	508.7742	1015.53385	-0.25879	-0.00013167	2.6727	0.0013598	2.4139	0.0012282	508.7740915281799	73.156	0.94971	73.166	72.529	73.479	0.0096512					44	23	3	0	0	0	0.027866	1	8799	8799		29.15	1.2673	1	189750	+		61919	30891	43574	43636	67067	67067					0.026700540689716945
QEWPTLKDKGE	11	Unmodified	_QEWPTLKDKGE_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7899169921875	3	444.226103	1329.65648	-0.64706	-0.00028744	0.039245	1.7434E-05	-0.60782	-0.00027001	444.2265053648381	30.778	0.54785	30.6	30.283	30.831	-0.17818					21	12	3	0	0	0	0.024734	1	1954	1954		24.276	7.7461	1	56876	+		61920	20836	43575	43637	67068	67068					0.004838460097062125
QEYEFIVLP	9	Unmodified	_QEYEFIVLP_					0	0	0		nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.31103515625	2	569.294965	1136.57538	-0.22147	-0.00012608	-0.034558	-1.9674E-05	-0.25602	-0.00014575	569.2950260374453	31.304	0.26076	31.119	30.984	31.245	-0.18503					8	6	2	0	0	0	0.024527	1	2068	2068		24.519	0	1	231920			61921	4707	43576	43638	67069	67069					0.012551900376138292
QFEKTQLK	8	Unmodified	_QFEKTQLK_					0	0	0			REV__ENSG00000073849|ENST00000169298|ST6GAL1	REV__ENSG00000073849|ENST00000169298|ST6GAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.8024597167969	2	511.287474	1020.5604	0.55657	0.00028457	-2.3696	-0.0012115	-1.813	-0.00092696	511.28586674944233	18.874	0.29588	18.717	18.643	18.939	-0.15637					7	5	2	0	0	0	0.027866	1	354	354		23.042	0	1	41336	+		61922	20512	43577	43639	67070	67070					0.05093742960286818
QFFDLPQP	8	Unmodified	_QFFDLPQP_					0	0	0			REV__ENSG00000147571|ENST00000276571|CRH	REV__ENSG00000147571|ENST00000276571|CRH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.73736572265625	2	496.247818	990.481082	-1.1555	-0.00057343	1.1509	0.00057112	-0.0046591	-2.3121E-06	496.24815362838774	33.499	0.32241	33.333	33.156	33.479	-0.16565					16	7	3	0	0	0	0.027866	1	2394	2394		27.882	0	1	158240	+		61923	24564	43578	43640	67071	67071					-0.014539039938654241
QFFFQLLI	8	Unmodified	_QFFFQLLI_					0	0	0			REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	REV__ENST00000515265.2_1_5:140022188-140024328:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.26318359375	2	528.299853	1054.58515	0.3448	0.00018216	0.73647	0.00038908	1.0813	0.00057123	528.2996627019263	100.25	0.47599	100.24	100.07	100.55	-0.0050888					15	12	2	0	0	0	0.027866	1	12775	12775		13.775	0	1	104030	+		61924	22042	43579	43641	67072	67072					0.06004422833689205
QFGPQAPAL	9	Unmodified	_QFGPQAPAL_					0	0	0		ENST00000465822.5_1_1:1019836-1026884:-|nuORF;nc|nan|Q96HA4-2|C1orf159	ENST00000465822.5_1_1:1019836-1026884:-|nuORF	ENST00000465822.5_1_1:1019836-1026884:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.28680419921875	2	464.747985	927.481417	0.18039	8.3838E-05	0.38293	0.00017796	0.56332	0.0002618	464.74805035537486	61.762	0.36572	61.833	61.59	61.956	0.071125					14	9	2	0	0	0	0.024436	1	7054	7054		38.806	13.356	1	170510			61925	14795	43580	43642	67073	67073					0.01477515725991907
QFGPQAPAL	9	Unmodified	_QFGPQAPAL_					0	0	0		ENST00000465822.5_1_1:1019836-1026884:-|nuORF;nc|nan|Q96HA4-2|C1orf159	ENST00000465822.5_1_1:1019836-1026884:-|nuORF	ENST00000465822.5_1_1:1019836-1026884:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.747985	927.481417	-0.25059	-0.00011646	0.10539	4.8979E-05	-0.1452	-6.7484E-05	464.7482605774667	62.161	0.19473	61.904	61.783	61.978	-0.25725	0.042393	-0.00025237	NaN	47.916	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45475			61926	14795	43580	43642							0.01477515725991907
QFGRGRRYSN	10	Unmodified	_QFGRGRRYSN_					0	0	0			REV__ENST00000436315.2_1_9:71224362-71225004:+|nuORF	REV__ENST00000436315.2_1_9:71224362-71225004:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2145080566406	3	414.214643	1239.6221	0.23794	9.8557E-05	-1.3457	-0.00055742	-1.1078	-0.00045886	414.2141831334698	24.218	1.0455	24.297	24.003	25.049	0.078344					77	22	5	0	0	0	1.1081	1	1019	1019		31.634	1.3165	1	6153700	+		61927	32461	43581	43643	67074	67074					0.011874874321620155
QFIDWVTTI	9	Unmodified	_QFIDWVTTI_					0	0	0			REV__ENST00000509614.1_1_4:103822343-103831634:-|nuORF	REV__ENST00000509614.1_1_4:103822343-103831634:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.7947998046875	2	561.795132	1121.57571	-0.12157	-6.8297E-05	-0.07958	-4.4708E-05	-0.20115	-0.000113	561.7948904920611	71.303	1.675	71.314	70.937	72.612	0.010735					122	43	4	0	0	0	0.16468	1	8579	8579		96.19	5.8206	1	4027800	+		61928	25673	43582	43644	67075	67075					0.019786097574751693
QFIFDVVN	8	Unmodified	_QFIFDVVN_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7923583984375	2	491.255643	980.496732	-0.97778	-0.00048034	2.0223	0.00099348	1.0445	0.00051314	491.25689982156894	80.58	0.46297	80.428	80.217	80.68	-0.15168					13	10	2	0	0	0	0.027866	1	10000	10000		40.778	8.8233	1	97454			61929	10221;10159;9837	43583	43645	67076	67076					0.005703825231876181
QFKAKLASL	9	Unmodified	_QFKAKLASL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.3078308105469	2	503.30821	1004.60187	-0.045695	-2.2999E-05	0.0022198	1.1173E-06	-0.043475	-2.1881E-05	503.3079274048635	42.721	1.2179	42.609	42.281	43.499	-0.11253					84	32	4	0	0	0	0.53979	1	3887	3887		56.721	14.325	1	3549500			61930	2053	43584	43646	67077	67077					0.09974923719596518
QFKAKLASL	9	Unmodified	_QFKAKLASL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.3082275390625	2	503.30821	1004.60187	-0.40604	-0.00020436	0.36885	0.00018564	-0.037192	-1.8719E-05	503.30813413000106	42.877	1.4193	42.639	41.932	43.351	-0.23737					89	34	4	0	0	0	0.56934	1	3881	3881		54.776	3.4409	1	3928800			61931	2053	43584	43646	67078	67078					0.09974923719596518
QFKAKLASL	9	Unmodified	_QFKAKLASL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.3082275390625	2	503.30821	1004.60187	-0.85002	-0.00042782	1.0344	0.00052063	0.1844	9.2808E-05	503.30851835106165	42.913	1.2732	42.687	42.105	43.379	-0.22597					91	33	4	0	0	0	0.31037	2	3897	3885;3897		74.255	13.283	1	4051800			61932	2053	43584	43646	67079;67080	67080					0.09974923719596518
QFKEFHKLK	9	Unmodified	_QFKEFHKLK_					0	0	0			REV__ENST00000472050.5_1_2:203130664-203149064:+|nuORF	REV__ENST00000472050.5_1_2:203130664-203149064:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.55108642578125	3	402.232752	1203.67643	0.68635	0.00027607	-4.3036	-0.0017311	-3.6173	-0.001455	402.23117261630654	23.418	1.7977	23.238	22.287	24.084	-0.17989					71	40	4	0	0	0	0.02438	1	916	916		54.722	10.345	1	1907800	+		61933	20198	43585	43647	67081	67081					0.08273686530992563
QFKKRREA	8	Unmodified	_QFKKRREA_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.29296875	2	531.811982	1061.60941	-0.53643	-0.00028528	1.5307	0.00081402	0.99423	0.00052874	531.8125976427214	31.17	0.90464	30.929	30.541	31.446	-0.24109					54	22	4	0	0	0	0.027866	1	2096	2096		40.778	1.5253	1	1395400	+		61934	24328	43586	43648	67082	67082					0.08107076039891581
QFKKRREA	8	Unmodified	_QFKKRREA_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.292724609375	2	531.811982	1061.60941	-0.41716	-0.00022185	1.3945	0.00074163	0.97738	0.00051978	531.8125331464953	31.129	0.97527	30.977	30.639	31.615	-0.15231					53	24	4	0	0	0	0.027866	1	2083	2083		49.442	23.867	1	1502800	+		61935	24328	43586	43648	67083	67083					0.08107076039891581
QFKLLHGR	8	Unmodified	_QFKLLHGR_					0	0	0			REV__ENST00000504309.5_2_5:223639-224496:+|nuORF	REV__ENST00000504309.5_2_5:223639-224496:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7889099121094	2	499.798343	997.582134	-0.31649	-0.00015818	2.0011	0.0010001	1.6846	0.00084195	499.7992724437176	93.254	0.21884	93.11	93.002	93.22	-0.1441					6	4	2	0	0	0	0.027866	1	11444	11444		25.45	0	1	28136	+		61936	32030	43587	43649	67084	67084					0.08324592499513983
QFKPASDN	8	Unmodified	_QFKPASDN_					0	0	0			REV__PCDHGA9|p.G468Yfs*10|1|0.13|ENSG00000261934|chr5:141404350-141404351|CA/-|frameshift_variant	REV__PCDHGA9|p.G468Yfs*10|1|0.13|ENSG00000261934|chr5:141404350-141404351|CA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.2656555175781	2	453.719424	905.424296	-0.2147	-9.7412E-05	0.74023	0.00033586	0.52553	0.00023844	453.7195113321409	29.342	0.88291	29.193	28.826	29.709	-0.14952					27	20	2	0	0	0	0.027866	1	1735	1735		47.916	32.274	1	136050	+		61937	29118	43588	43650	67085	67085					-0.03219951550386213
QFLDDFIDL	9	Unmodified	_QFLDDFIDL_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.276611328125	2	563.276772	1124.53899	-0.67038	-0.00037761	0.006167	3.4737E-06	-0.66421	-0.00037413	563.2767772660837	81.732	3.2047	81.732	81.299	84.504	0					218	75	4	0	0	0	0.15029	2	10233	10233;10247		99.375	6.1795	1	19333000			61938	958	43589	43651	67086;67087	67086					-0.01829686859082358
QFLDDFIDL	9	Unmodified	_QFLDDFIDL_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.2764892578125	2	563.276772	1124.53899	-0.073824	-4.1583E-05	-0.5296	-0.00029831	-0.60342	-0.00033989	563.2764708422711	81.861	3.0713	81.73	81.298	84.369	-0.13075					222	72	4	0	0	0	0.16468	3	10155	10155;10204;10241		96.19	5.8206	1	21913000			61939	958	43589	43651	67088;67089;67090	67088					-0.01829686859082358
QFLDDFIDL	9	Unmodified	_QFLDDFIDL_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.2772827148438	2	563.276772	1124.53899	0.36435	0.00020523	-0.78413	-0.00044168	-0.41978	-0.00023645	563.2763621872085	81.853	2.3968	81.624	81.022	83.418	-0.2289					176	55	5	0	0	0	0.27161	2	9824	9815;9824		79.451	0.58177	1	5689700			61940	958	43589	43651	67091;67092	67092					-0.01829686859082358
QFLDDFIDL	9	Unmodified	_QFLDDFIDL_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2774658203125	2	563.276772	1124.53899	-0.78978	-0.00044486	0.30193	0.00017007	-0.48785	-0.00027479	563.2769492546245	81.784	2.2277	81.642	81.151	83.379	-0.14248					171	51	5	0	0	0	0.31037	1	9805	9805		74.255	2.3776	1	6248000			61941	958	43589	43651	67093	67093					-0.01829686859082358
QFLEQQLLT	9	Unmodified	_QFLEQQLLT_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.31787109375	2	560.305864	1118.59717	-1.0546	-0.00059092	1.3605	0.00076232	0.3059	0.0001714	560.3066726782342	65.451	0.85615	65.178	64.825	65.681	-0.27282					67	23	4	0	0	0	0.024319	1	7671	7671		56.721	10.749	1	5762100	+		61942	26602	43590	43652	67094	67094					0.04261994786179457
QFLFALVAV	9	Unmodified	_QFLFALVAV_					0	0	0			REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14	REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.29791259765625	2	504.299853	1006.58515	-0.10118	-5.1026E-05	-3.9274	-0.0019806	-4.0286	-0.0020316	504.2977977908085	61.853	0.90803	61.639	61.375	62.283	-0.21375					76	22	4	0	0	0	0.36105	3	6924	6924;6950;6974		68.485	0.51445	1	5668100	+		61943	21716	43591	43653	67095;67096;67097	67095					0.0821242283365109
QFLFALVAV	9	Unmodified	_QFLFALVAV_					0	0	0			REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14	REV__nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.29766845703125	2	504.299853	1006.58515	-0.93965	-0.00047387	-3.2328	-0.0016303	-4.1724	-0.0021042	504.29810868059883	61.803	1.0546	61.625	61.329	62.383	-0.17781					91	26	5	0	0	0	0.4855	1	6935	6935		60.294	1.512	1	4994100	+		61944	21716	43591	43653	67098	67098					0.0821242283365109
QFLGLFDL	8	Unmodified	_QFLGLFDL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.76251220703125	2	476.760561	951.506569	1.9818	0.00094486	1.8433	0.00087879	3.8251	0.0018237	476.76126309106206	63.976	2.1623	63.976	63.558	65.721	0					187	59	5	0	0	0	0.39824	1	7513	7513		97.473	3.4663	1	17568000			61945	1059	43592	43654	67099	67099					0.028875705285713593
QFLGLFDL	8	Unmodified	_QFLGLFDL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.76263427734375	2	476.760561	951.506569	0.18973	9.0456E-05	3.4923	0.001665	3.682	0.0017554	476.7620701585215	64.209	1.8639	63.957	63.553	65.417	-0.2514					140	50	5	0	0	0	0.50239	1	7495	7495		85.359	11.385	1	18540000			61946	1059	43592	43654	67100	67100					0.028875705285713593
QFLHLGNAD	9	Unmodified	_QFLHLGNAD_					0	0	0			REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.290283203125	2	507.753798	1013.49304	-0.67931	-0.00034492	-4.4894	-0.0022795	-5.1687	-0.0026244	507.75133231094395	32.985	0.48129	32.819	32.556	33.038	-0.16565					17	11	2	0	0	0	0.024477	1	2310	2310		35.618	3.6634	1	158540	+		61947	22557	43593	43655	67101	67101					-0.013162872506654821
QFLHLGNAD	9	Unmodified	_QFLHLGNAD_					0	0	0			REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	REV__KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.753798	1013.49304	-0.17262	-8.7651E-05	-6.9749	-0.0035415	-7.1475	-0.0036292	508.25125431224365	32.899	0.61329	32.667	32.383	32.997	-0.23107	-0.075759	-0.00087483	NaN	26.693	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430860	+		61948	22557	43593	43655							-0.013162872506654821
QFLKLLEP	8	Unmodified	_QFLKLLEP_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2745361328125	2	494.29731	986.580068	0.70771	0.00034982	-1.1513	-0.00056907	-0.44355	-0.00021925	494.2965140273603	71.92	0.84987	71.92	71.604	72.454	0					33	21	2	0	0	0	0.027866	1	8781	8781		60.972	0	1	721400	+		61949	23174	43594	43656	67102	67102					0.08624118971044936
QFLLRLLLF	9	Unmodified	_QFLLRLLLF_					0	0	0			REV__ENST00000521844.1_1_8:8861643-8861781:+|nuORF	REV__ENST00000521844.1_1_8:8861643-8861781:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.8141479492188	2	581.870977	1161.7274	-0.12433	-7.2344E-05	1.1092	0.00064539	0.98483	0.00057304	581.8712957656081	20.146	0.2835	19.978	19.718	20.002	-0.16774					8	5	2	0	0	0	0.024541	1	490	490		18.324	0	1	13592	+		61950	34327	43595	43657	67103	67103					0.15300635575840715
QFLMPQQWL	9	Unmodified	_QFLMPQQWL_					0	0	0			REV__nc|ENSG00000184619|Q6ZNG9|KRBA2	REV__nc|ENSG00000184619|Q6ZNG9|KRBA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.3447875976562	2	595.804977	1189.5954	0.25075	0.0001494	3.4414	0.0020504	3.6921	0.0021998	595.8076417128445	71.411	0.65385	71.205	70.964	71.618	-0.20614					23	15	2	0	0	0	0.024457	1	8383	8383		37.159	8.0096	1	186410	+		61951	37012	43596	43658	67104	67104					0.008186624965901501
QFLRLLSN	8	Unmodified	_QFLRLLSN_					0	0	0			REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF	REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.79498291015625	2	495.790184	989.565815	-0.14614	-7.2456E-05	0.79599	0.00039464	0.64984	0.00032219	495.79053747979856	59.293	0.36636	59.105	58.858	59.224	-0.18795					14	8	2	0	0	0	0.027866	1	6561	6561		23.042	0	1	795150	+		61952	34636	43597	43659	67105	67105					0.07061466542756989
QFLRLLSN	8	Unmodified	_QFLRLLSN_					0	0	0			REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF	REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.790184	989.565815	0.97069	0.00048126	-4.1537	-0.0020593	-3.183	-0.0015781	495.788233385696	58.913	0.35932	58.913	58.606	58.965	0	-0.050043	-0.0011913	NaN	20.947	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261270	+		61953	34636	43597	43659							0.07061466542756989
QFLRLLSN	8	Unmodified	_QFLRLLSN_					0	0	0			REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF	REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.790184	989.565815	1.658	0.00082204	-5.3242	-0.0026397	-3.6662	-0.0018176	495.7876628509885	59.057	0.28518	58.87	58.721	59.007	-0.18705	-0.092694	-0.002352	NaN	20.947	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235490	+		61954	34636	43597	43659							0.07061466542756989
QFLTPININ	9	Unmodified	_QFLTPININ_					0	0	0			REV__nc|ENSG00000054219|O60449-2|LY75	REV__nc|ENSG00000054219|O60449-2|LY75	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2904052734375	2	530.295299	1058.57605	-0.45962	-0.00024373	-3.7431	-0.001985	-4.2027	-0.0022287	530.2932288166244	51.109	0.43777	51.109	50.81	51.248	0					20	11	2	0	0	0	0.024466	1	5398	5398		39.253	3.6345	1	389660	+		61955	36456	43598	43660	67106	67106					0.049100294773325004
QFLTPININ	9	Unmodified	_QFLTPININ_					0	0	0			REV__nc|ENSG00000054219|O60449-2|LY75	REV__nc|ENSG00000054219|O60449-2|LY75	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.295299	1058.57605	-0.7246	-0.00038425	-4.7905	-0.0025404	-5.5151	-0.0029246	530.2923469547958	51.382	0.30555	51.105	50.929	51.235	-0.27643	0.018984	-0.001378	NaN	24.519	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159590	+		61956	36456	43598	43660							0.049100294773325004
QFMVQHYIP	9	Unmodified	_QFMVQHYIP_					0	0	0			REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.8140258789062	2	581.789327	1161.5641	-0.12302	-7.157E-05	-2.4984	-0.0014535	-2.6214	-0.0015251	581.7883547936567	20.172	0.2389	19.949	19.878	20.117	-0.22344					5	4	2	0	0	0	0.024487	1	484	484		31.955	1.6371	1	20387	+		61957	31998	43599	43661	67107	67107					-0.010219105375199433
QFNDKFGPGY	10	Unmodified	_QFNDKFGPGY_					0	0	0			REV__nc|ENSG00000211821|A0JD36|TRDV2	REV__nc|ENSG00000211821|A0JD36|TRDV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7703857421875	2	586.772188	1171.52982	-0.39575	-0.00023222	-1.941	-0.0011389	-2.3368	-0.0013711	586.7707848756055	73.978	0.44438	73.701	73.405	73.849	-0.2769					24	13	3	0	0	0	1.1197	1	8712	8712		20.947	0.4651	1	1326900	+		61958	37117	43600	43662	67108	67108					-0.049080354247507785
QFPDDVEDA	9	Unmodified	_QFPDDVEDA_					0	0	0		nc|ENSG00000170500|Q1L5Z9-2|LONRF2;ENSG00000170500|ENST00000393437|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2974853515625	2	518.216911	1034.41927	-0.20048	-0.00010389	-2.6869	-0.0013924	-2.8874	-0.0014963	518.2170752739036	102.7	0.28082	102.69	102.55	102.83	-0.0046082					16	6	3	0	0	0	0.024427	1	13072	13072		34.173	12.47	1	77721			61959	8048	43601	43663	67109	67109					-0.09656300203664614
QFPDMCKKQ	9	Unmodified	_QFPDMCKKQ_					0	0	0			REV__ENSG00000158901|ENST00000289953|WFDC8	REV__ENSG00000158901|ENST00000289953|WFDC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7339477539062	2	562.764994	1123.51544	0.24802	0.00013958	0.91312	0.00051387	1.1611	0.00065345	563.2674505343947	78.826	0.21743	78.594	78.433	78.65	-0.23141					7	4	2	0	0	0	0.024506	1	9397	9397		30.504	14.862	1	26149	+		61960	25226	43602	43664	67110	67110					-0.04138147168919204
QFPPPRISTQ	10	Unmodified	_QFPPPRISTQ_					0	0	0		ENST00000585909.1_2_17:40714295-40714430:+|nuORF;ENST00000587858.5_2_17:40714180-40714430:+|nuORF	ENST00000585909.1_2_17:40714295-40714430:+|nuORF	ENST00000585909.1_2_17:40714295-40714430:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.8185424804688	2	585.81693	1169.61931	1.3018	0.00076263	1.3841	0.00081083	2.6859	0.0015735	585.8177074786114	19.038	3.0515	18.805	18.483	21.534	-0.23345					108	61	4	0	0	0	1.1307	1	396	396		26.693	2.4902	1	956800			61961	17235	43603	43665	67111	67111					0.04128219254607757
QFQDDLLI	8	Unmodified	_QFQDDLLI_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7378845214844	2	496.258382	990.502212	-0.31435	-0.000156	1.7067	0.00084695	1.3923	0.00069095	496.2591750538141	33.814	0.31614	33.59	33.446	33.762	-0.22412					12	7	2	0	0	0	0.027866	1	2432	2432		44.117	6.9577	1	141360	+		61962	20872	43604	43666	67112	67112					0.006580613150163117
QFQLLIQHLWI	11	Unmodified	_QFQLLIQHLWI_					0	0	0		ENSG00000166664|ENST00000299847|CHRFAM7A	ENSG00000166664|ENST00000299847|CHRFAM7A	ENSG00000166664|ENST00000299847|CHRFAM7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.9546203613281	3	480.278362	1437.81326	0.50536	0.00024271	2.9742	0.0014285	3.4796	0.0016712	480.61418701487395	19.884	0.38752	19.724	19.529	19.916	-0.16079					12	7	2	0	0	0	0.024851	1	463	463		19.263	2.7328	1	17259			61963	7592	43605	43667	67113	67113					0.11186175690727396
QFSANLLDL	9	Unmodified	_QFSANLLDL_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7707824707031	2	510.771657	1019.52876	-0.78987	-0.00040344	0.61884	0.00031609	-0.17103	-8.7358E-05	510.7719353070694	84.557	1.6811	84.484	83.743	85.424	-0.072769					126	39	5	0	0	0	0.057894	2	10522	10486;10522		125.81	6.4041	1	14600000	+		61964	25231	43606	43668	67114;67115	67115					0.019777502063448082
QFSANLLDL	9	Unmodified	_QFSANLLDL_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.77105712890625	2	510.771657	1019.52876	-0.66248	-0.00033838	0.55539	0.00028368	-0.10709	-5.4699E-05	510.7718822219075	84.49	1.9784	84.517	83.641	85.619	0.026558					134	46	5	0	0	0	0.043667	1	10456	10456		131.03	0	1	13872000	+		61965	25231	43606	43668	67116	67116					0.019777502063448082
QFSFSFVR	8	Unmodified	_QFSFSFVR_					0	0	0			REV__ENST00000315579.9_1_12:6602900-6603308:+|nuORF	REV__ENST00000315579.9_1_12:6602900-6603308:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.74468994140625	2	509.261259	1016.50797	-0.41213	-0.00020988	-3.4984	-0.0017816	-3.9106	-0.0019915	509.25798517286466	30.185	0.25941	29.941	29.862	30.122	-0.24415					6	5	2	0	0	0	0.027866	1	1920	1920		37.159	16.212	1	15779	+		61966	30267	43607	43669	67117	67117					0.00037204617342467827
QFSVHPETP	9	Unmodified	_QFSVHPETP_					0	0	0		ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.77099609375	2	521.253631	1040.49271	0.027762	1.4471E-05	0.22331	0.0001164	0.25108	0.00013087	521.2534100182553	52.236	0.61236	52.052	51.741	52.354	-0.18404					35	15	3	0	0	0	0.024397	1	5440	5440		47.657	12.039	1	641300			61967	4050	43608	43670	67118	67118					-0.025917069705201357
QFSYMGHILL	10	Unmodified	_QFSYMGHILL_					0	0	0			REV__ENST00000380050.7_1_7:90836599-90836752:+|nuORF	REV__ENST00000380050.7_1_7:90836599-90836752:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.5706787109375	3	403.542598	1207.60597	0.59941	0.00024189	-0.80553	-0.00032506	-0.20612	-8.3176E-05	403.54221251020437	19.962	0.97155	19.794	19.324	20.296	-0.16774					39	16	4	0	0	0	0.03519	1	481	481		20.03	1.7684	1	433170	+		61968	31459	43609	43671	67119	67119					0.010466451510183106
QFVFDEPSDR	10	Unmodified	_QFVFDEPSDR_					0	0	0			REV__ENST00000487676.1_1_6:32632488-32634384:-|nuORF	REV__ENST00000487676.1_1_6:32632488-32634384:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8816833496094	3	413.859532	1238.55677	-1.0424	-0.00043139	-1.9379	-0.00080202	-2.9803	-0.0012334	414.1918532269247	29.322	0.43474	29.077	28.881	29.316	-0.24524					13	9	2	0	0	0	0.03519	1	1768	1768		73.841	5.2153	1	54469	+		61969	27259	43610	43672	67120	67120					-0.05296971604229839
QFVLKRVH	8	Unmodified	_QFVLKRVH_					0	0	0			REV__ENSG00000089639|ENST00000203556|GMIP	REV__ENSG00000089639|ENST00000203556|GMIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.8151245117188	2	513.813993	1025.61343	-0.62035	-0.00031874	3.2051	0.0016468	2.5848	0.0013281	513.8154826987353	44.956	0.96857	44.745	44.184	45.153	-0.21109					59	25	4	0	0	0	1.0239	1	4206	4206		33.516	1.5607	1	2705300	+		61970	20857	43611	43673	67121	67121					0.10165165533612708
QFVRQSPLS	9	Unmodified	_QFVRQSPLS_					0	0	0			REV__ENST00000330459.7_1_17:66031669-66031822:+|nuORF	REV__ENST00000330459.7_1_17:66031669-66031822:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.292724609375	2	531.290548	1060.56654	-0.79244	-0.00042102	3.7404	0.0019872	2.9479	0.0015662	531.2923680423469	31.232	2.9557	31.047	30.076	33.031	-0.18503					187	71	4	0	0	0	0.45795	1	2107	2107		62.107	0.41614	1	4279400	+		61971	30459	43612	43674	67122	67122					0.03868261191814781
QFVRQSPLS	9	Unmodified	_QFVRQSPLS_					0	0	0			REV__ENST00000330459.7_1_17:66031669-66031822:+|nuORF	REV__ENST00000330459.7_1_17:66031669-66031822:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.292724609375	2	531.290548	1060.56654	-0.42291	-0.00022469	3.3618	0.0017861	2.9389	0.0015614	531.2921338159555	31.304	2.7943	31.152	30.137	32.932	-0.15231					184	68	4	0	0	0	0.45795	1	2083	2083		62.107	2.1766	1	3999900	+		61972	30459	43612	43674	67123	67123					0.03868261191814781
QFVVRSYWK	9	Unmodified	_QFVVRSYWK_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.88751220703125	3	404.888986	1211.64513	0.59779	0.00024204	-3.8971	-0.0015779	-3.2993	-0.0013359	404.88742601233906	17.795	0.99399	17.589	17.315	18.309	-0.20669					49	19	4	0	0	0	0.69446	1	231	231		46.457	3.5925	1	1840100	+		61973	28275	43613	43675	67124	67124					0.047771134968797924
QFYNPIHS	8	Unmodified	_QFYNPIHS_					0	0	0		ENST00000295924.11_2_3:156396013-156396097:+|nuORF	ENST00000295924.11_2_3:156396013-156396097:+|nuORF	ENST00000295924.11_2_3:156396013-156396097:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.78009033203125	2	503.243067	1004.47158	-0.044564	-2.2426E-05	3.6911	0.0018575	3.6465	0.0018351	503.74772041352304	53.578	0.10925	53.578	53.509	53.618	0					4	2	2	0	0	0	0.027866	1	5799	5799		19.36	0	1	49063			61974	11833	43614	43676	67125	67125					-0.030476722793764566
QFYNREERERD	11	Unmodified	_QFYNREERERD_					0	0	0			REV__ENST00000540721.5_1_16:90089090-90108732:+|nuORF	REV__ENST00000540721.5_1_16:90089090-90108732:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7923583984375	3	514.574566	1540.70187	-0.21155	-0.00010886	-0.46801	-0.00024083	-0.67957	-0.00034969	514.5742827386841	25.581	0.63153	25.661	25.377	26.008	0.08009					40	14	4	0	0	0	0.024856	1	1164	1164		5.6988	0	1	195530	+		61975	24058	43615	43677	67126	67126					-0.0468553547520969
QGAALRASRA	10	Unmodified	_QGAALRASRA_					0	0	0		ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2953186035156	2	500.785964	999.557376	-0.21919	-0.00010976	3.1169	0.0015609	2.8977	0.0014511	500.78711126895996	26.331	0.62897	26.412	26.171	26.799	0.081293					26	14	3	0	0	0	0.03519	1	1249	1249		37.812	18.452	1	205410			61976	6912	43616	43678	67127	67127					0.05757912626120287
QGAALRASRA	10	Unmodified	_QGAALRASRA_					0	0	0		ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	500.785964	999.557376	-0.067811	-3.3959E-05	2.9426	0.0014736	2.8748	0.0014397	500.7870895044469	26.508	0.4172	26.508	26.324	26.741	0	0.047302	1.1159E-05	NaN	28.081	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218540			61977	6912	43616	43678							0.05757912626120287
QGAALRASRA	10	Unmodified	_QGAALRASRA_					0	0	0		ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.785964	999.557376	-0.51906	-0.00025994	2.5701	0.0012871	2.051	0.0010271	500.78742007938524	26.485	0.41145	26.462	26.324	26.735	-0.023087	0.001426	-0.00036196	NaN	28.081	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234020			61978	6912	43616	43678							0.05757912626120287
QGAAMNVLI	9	Unmodified	_QGAAMNVLI_					0	0	0			REV__nc|ENSG00000151093|Q9NWU1-2|OXSM	REV__nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	458.74967	915.484787	-0.32969	-0.00015125	1.3764	0.00063144	1.0467	0.00048019	458.75033672872695	30.597	0.92028	30.605	30.247	31.167	0.0086708					36	21	3	0	0	0	0.024	1	1935	1935		55.504	7.5886	1	616940	+		61979	24751	43617	43679	67128	67128					0.023664425083552487
QGAAPVHSH	9	Unmodified	_QGAAPVHSH_					0	0	0			REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	REV__ENST00000332231.9_2_11:1011900-1012230:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2597351074219	2	452.225208	902.435863	0.19344	8.7477E-05	-1.4106	-0.00063789	-1.2171	-0.00055041	452.2244216651137	40.268	0.9144	40.156	39.715	40.629	-0.11223					46	24	3	0	0	0	0.024294	1	3494	3494		37.159	12.956	1	1936600	+		61980	30488	43618	43680	67129	67129					-0.019257097363833964
QGACQIHSLD	10	Unmodified	_QGACQIHSLD_					0	0	0			REV__ENSG00000187492|ENST00000412678|CDHR4	REV__ENSG00000187492|ENST00000412678|CDHR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.3035888671875	2	536.248023	1070.48149	-1.1153	-0.00059809	1.0562	0.00056639	-0.0591	-3.1692E-05	536.2486003153781	34.972	0.40058	35.019	34.907	35.307	0.046696					14	10	2	0	0	0	0.03519	1	2600	2600		25.574	3.6142	1	58606	+		61981	27934	43619	43681	67130	67130					-0.05092852336292708
QGACSPPSP	9	Unmodified	_QGACSPPSP_					0	0	0		ENST00000343898.9_1_11:71713762-71716703:+|nuORF	ENST00000343898.9_1_11:71713762-71716703:+|nuORF	ENST00000343898.9_1_11:71713762-71716703:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7304382324219	2	422.186903	842.359253	-0.93748	-0.00039579	0.22076	9.3202E-05	-0.71672	-0.00030259	422.1873840710755	28.224	1.5332	28.224	27.616	29.149	0					60	37	3	0	0	0	0.024292	1	1695	1695		49.442	0	1	112540			61982	12538	43620	43682	67131	67131					-0.06823269347876249
QGALLAALPA	10	Unmodified	_QGALLAALPA_					0	0	0		ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.75048828125	2	462.779285	923.544017	0.073583	3.4053E-05	-0.17059	-7.8948E-05	-0.097012	-4.4895E-05	462.77903990500965	42.783	0.84858	42.644	42.108	42.956	-0.13929					66	23	4	0	0	0	0.03519	1	3923	3923		16.473	0	1	1069700			61983	11961	43621	43683	67132	67132					0.07918661794178661
QGALVVRQF	9	Unmodified	_QGALVVRQF_					0	0	0			REV__ENST00000251363.9_1_19:8275734-8316130:+|nuORF	REV__ENST00000251363.9_1_19:8275734-8316130:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.29840087890625	2	509.295633	1016.57671	-0.50722	-0.00025833	-0.037784	-1.9243E-05	-0.545	-0.00027757	509.29552121720906	27.043	0.46367	26.8	26.571	27.035	-0.24217					22	10	3	0	0	0	0.024535	1	1448	1448		18.324	3.4595	1	358080	+		61984	29504	43622	43684	67133	67133					0.06908868917037125
QGANNVITT	9	Unmodified	_QGANNVITT_					0	0	0			REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2392272949219	2	459.237981	916.461409	1.363	0.00062595	1.9517	0.00089631	3.3147	0.0015223	459.2388106976969	110.5	0.71297	110.5	110.2	110.91	0					46	22	3	0	0	0	0.85329	1	14048	14048		35.618	5.1146	1	112900	+		61985	36686	43623	43685	67134	67134					-0.00016280004626878508
QGANNVITT	9	Unmodified	_QGANNVITT_					0	0	0			REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	459.237981	916.461409	0.40923	0.00018794	3.2912	0.0015115	3.7005	0.0016994	459.2394763006166	110.55	0.58859	110.56	110.32	110.91	0.0069427	0.031273	0.00073432	NaN	35.618	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38194	+		61986	36686	43623	43685							-0.00016280004626878508
QGDATLSSGH	10	Unmodified	_QGDATLSSGH_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7248229980469	2	486.722695	971.430838	0.46413	0.0002259	2.7097	0.0013189	3.1738	0.0015448	486.7237545419338	97.405	0.93187	97.405	96.926	97.857	-3.0518E-05					40	20	3	0	0	0	1.0002	1	12362	12362		45.972	5.3996	1	258850	+		61987	28393	43624	43686	67135	67135					-0.056020583896497556
QGDGDMDLRQM	11	Unmodified	_QGDGDMDLRQM_					0	0	0			REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.2662963867188	2	633.266087	1264.51762	-0.082153	-5.2025E-05	-0.19099	-0.00012095	-0.27315	-0.00017297	633.2661262132405	32.046	1.1928	32.046	31.71	32.903	0					89	30	5	0	0	0	0.95911	1	2196	2196		36.447	17.343	1	3955700	+		61988	27548	43625	43687	67136	67136					-0.10405763221774578
QGDGDMDLRQM	11	Unmodified	_QGDGDMDLRQM_					0	0	0			REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.265869140625	2	633.266087	1264.51762	0.29916	0.00018945	-0.42852	-0.00027137	-0.12936	-8.1919E-05	633.2659246060883	31.908	1.2692	31.92	31.624	32.893	0.011799					90	32	5	0	0	0	0.99147	1	2156	2156		22.58	0	1	3981800	+		61989	27548	43625	43687	67137	67137					-0.10405763221774578
QGDSFGLAVL	10	Unmodified	_QGDSFGLAVL_					0	0	0			REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant	REV__PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7802734375	2	503.763832	1005.51311	-0.61102	-0.00030781	-2.829	-0.0014251	-3.44	-0.0017329	503.762246176908	23.236	0.58052	23.175	22.889	23.47	-0.06086					43	13	5	0	0	0	0.03519	1	873	873		45.972	0	1	356180	+		61990	24421	43626	43688	67138	67138					0.010574636893011302
QGEEPVRL	8	Unmodified	_QGEEPVRL_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.25018310546875	2	464.248349	926.482145	-0.57574	-0.00026729	4.2785	0.0019863	3.7028	0.001719	464.2503925053204	47.929	1.9482	47.929	47.56	49.508	0					193	56	6	0	0	0	0.47665	1	4955	4955		87.754	10.98	1	137570000	+		61991	36887	43627	43689	67139	67139					0.015963103750550545
QGEKPGALI	9	Unmodified	_QGEKPGALI_					0	0	0			REV__ENST00000482156.5_1_6:56328517-56330890:-|nuORF	REV__ENST00000482156.5_1_6:56328517-56330890:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7562255859375	2	456.761092	911.507631	-0.11445	-5.2278E-05	-3.5717	-0.0016314	-3.6861	-0.0016837	456.7607926808616	30.78	0.50276	30.855	30.626	31.129	0.074314					18	11	2	0	0	0	0.024354	1	1981	1981		16.473	0	1	98593	+		61992	33478	43628	43690	67140	67140					0.04833784897471105
QGELNKVLL	9	Unmodified	_QGELNKVLL_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.29840087890625	2	507.303124	1012.5917	-0.51751	-0.00026253	-1.0687	-0.00054216	-1.5862	-0.0008047	507.3023874407549	27.049	0.25622	26.807	26.571	26.828	-0.24217					10	5	2	0	0	0	0.024506	1	1448	1448		30.504	7.4612	1	308200	+		61993	24611;36769	43629	43691	67141	67141					0.08590315994376851
QGEPWIPDL	9	Unmodified	_QGEPWIPDL_					0	0	0		nc|ENSG00000140265|Q8IWY8-3|ZSCAN29;ZSCAN29|p.H273Qfs*2|1|0.14|ENSG00000140265|chr15:43366513-43366514|-/T|frameshift_variant;nc|ENSG00000140265|Q8IWY8-2|ZSCAN29;ENSG00000140265|ENST00000684362|ZSCAN29	nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.765869140625	2	527.763832	1053.51311	0.057447	3.0319E-05	2.792	0.0014735	2.8495	0.0015039	527.7650603266743	57.084	1.168	56.859	56.464	57.632	-0.22479					59	30	3	0	0	0	0.34489	2	6181	6181;6191		69.628	3.8245	1	3313000			61994	18333	43630	43692	67142;67143	67142					-0.011505363107289668
QGFLREVE	8	Unmodified	_QGFLREVE_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7720947265625	2	489.256174	976.497795	-0.38779	-0.00018973	3.7515	0.0018355	3.3637	0.0016457	489.25776481608636	42.051	0.74702	42.077	41.857	42.605	0.026012					44	21	3	0	0	0	0.027866	1	3854	3854		12.959	0	1	1404800	+		61995	21050	43631	43693	67144	67144					0.008605968920846863
QGFRGKIL	8	Unmodified	_QGFRGKIL_					0	0	0			REV__ENSG00000111817|ENST00000644252|DSE	REV__ENSG00000111817|ENST00000644252|DSE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.75079345703125	2	459.779619	917.544686	-1.0752	-0.00049434	1.0348	0.00047579	-0.040343	-1.8549E-05	459.7798597316846	38.354	1.117	38.381	38.057	39.174	0.027275					48	30	2	0	0	0	0.027866	1	3204	3204		33.516	0	1	118600	+		61996	21948	43632	43694	67145	67145					0.08261501233891977
QGFTVPPRL	9	Unmodified	_QGFTVPPRL_					0	0	0			REV__ENST00000444908.6_1_7:143421608-143421689:+|nuORF	REV__ENST00000444908.6_1_7:143421608-143421689:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7537536621094	2	507.790184	1013.56581	-0.66846	-0.00033944	-0.37979	-0.00019286	-1.0483	-0.00053229	507.7881600654701	29.748	0.75682	29.754	29.242	29.999	0.0058689					27	18	3	0	0	0	0.024374	1	1779	1779		49.442	22.749	1	110590	+		61997	32601	43633	43695	67146	67146					0.05957466542747625
QGFVIELLL	9	Unmodified	_QGFVIELLL_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.3096923828125	2	516.310418	1030.60628	-0.1046	-5.4004E-05	0.046241	2.3875E-05	-0.058355	-3.0129E-05	516.3102536988604	103.6	0.75932	103.61	103.22	103.98	0.0054169					52	19	3	0	0	0	0.12602	1	13250	13250		104.75	5.3716	1	769100			61998	1561	43634	43696	67147	67147					0.09220388142512093
QGGGADRPVP	10	Unmodified	_QGGGADRPVP_					0	0	0		ENST00000519873.1_1_2:73493729-73493846:-|nuORF	ENST00000519873.1_1_2:73493729-73493846:-|nuORF	ENST00000519873.1_1_2:73493729-73493846:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77423095703125	2	477.243598	952.472643	0.60041	0.00028654	-4.1853	-0.0019974	-3.5848	-0.0017108	477.2413180585736	68.462	0.87757	68.462	68.179	69.056	0					65	22	5	0	0	0	0.03519	1	8297	8297		35.152	0	1	1615400			61999	15964	43635	43697	67148	67148					-0.005494579104833974
QGGGARALL	9	Unmodified	_QGGGARALL_					0	0	0		ENSG00000163794|ENST00000296099|UCN	ENSG00000163794|ENST00000296099|UCN	ENSG00000163794|ENST00000296099|UCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7280578613281	2	421.745776	841.477	-1.0641	-0.0004488	0.71869	0.00030311	-0.34545	-0.00014569	421.74595750358924	28.759	0.74269	28.759	28.406	29.149	0					36	17	3	0	0	0	0.021616	1	1681	1681		44.117	0	1	635880			62000	7144	43636	43698	67149	67149					0.04992051303099743
QGGGDLSPL	9	Unmodified	_QGGGDLSPL_					0	0	0		ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	ENSG00000084444|ENST00000197268|FAM234B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7283020019531	2	422.213975	842.413397	-0.51762	-0.00021855	-2.7781	-0.001173	-3.2958	-0.0013915	422.21314532703775	28.579	0.46547	28.575	28.199	28.665	-0.0042					13	10	2	0	0	0	0.02435	1	1672	1672		42.396	19.354	1	32563			62001	1768	43637	43699	67150	67150					-0.01411353924663672
QGGGLGPLR	9	Unmodified	_QGGGLGPLR_					0	0	0			REV__ENST00000261401.7_1_12:109039619-109039913:-|nuORF	REV__ENST00000261401.7_1_12:109039619-109039913:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2251892089844	2	427.745776	853.477	0.51104	0.0002186	-1.2582	-0.00053818	-0.74713	-0.00031958	427.7457179792281	25.585	0.54752	25.665	25.418	25.966	0.08009					18	12	2	0	0	0	0.024319	1	1188	1188		39.253	18.306	1	53596	+		62002	29622	43638	43700	67151	67151					0.04440051303083692
QGGHSRRG	8	Unmodified	_QGGHSRRG_					0	0	0			REV__ENST00000583932.1_1_17:56063482-56065548:-|nuORF	REV__ENST00000583932.1_1_17:56063482-56065548:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.23876953125	2	427.720624	853.426696	0.092531	3.9578E-05	3.6289	0.0015522	3.7215	0.0015918	427.7219088443624	32.278	1.983	32.341	31.6	33.583	0.062889					135	51	4	0	0	0	0.027866	1	2198	2198		57.811	2.3071	1	915570	+		62003	35559	43639	43701	67152	67152					-0.005880583020484664
QGGKQLLNL	9	Unmodified	_QGGKQLLNL_					0	0	0		ENSG00000112339|ENST00000367837|HBS1L;nc|ENSG00000112339|Q9Y450-4|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.78802490234375	2	485.787641	969.56073	-0.98183	-0.00047696	0.22137	0.00010754	-0.76046	-0.00036942	485.7877679846316	44.956	0.95782	44.807	44.256	45.214	-0.1488					84	27	4	0	0	0	0.35646	1	4292	4292		68.787	3.3214	1	17271000			62004	3205	43640	43702	67153	67153					0.07473162680128098
QGGLGAADAL	10	Unmodified	_QGGLGAADAL_					0	0	0			REV__ENST00000576921.1_1_16:3073505-3073679:-|nuORF	REV__ENST00000576921.1_1_16:3073505-3073679:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.8814697265625	2	436.727249	871.439946	-0.77504	-0.00033848	-0.068196	-2.9783E-05	-0.84323	-0.00036826	436.72744323269654	39.786	0.47728	39.674	39.5	39.978	-0.11222					17	12	2	0	0	0	0.03519	1	3416	3416		19.104	0	1	43475	+		62005	35472	43641	43703	67154	67154					-0.0009166503335791276
QGGLLMLNL	9	Unmodified	_QGGLLMLNL_					0	0	0			REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2902526855469	2	479.773145	957.531738	0.32541	0.00015612	-3.6677	-0.0017596	-3.3423	-0.0016035	479.7712177663559	68.159	0.75641	68.178	67.892	68.648	0.018913					35	19	3	0	0	0	0.024405	1	8048	8048		35.618	0	1	481530	+		62006	31386	43642	43704	67155	67155					0.05127302059486283
QGGLRLLL	8	Unmodified	_QGGLRLLL_					0	0	0		ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	ENSG00000140691|ENST00000268314|ARMC5	ENSG00000140691|ENST00000268314|ARMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.2535095214844	2	435.281995	868.549437	0.17236	7.5024E-05	-1.3893	-0.00060473	-1.2169	-0.00052971	435.2813034586072	50.377	0.52861	50.097	49.839	50.367	-0.27977					24	13	2	0	0	0	0.027866	1	5122	5122		38.806	6.8513	1	348540			62007	5437	43643	43705	67156	67156					0.10990385376669565
QGGLWLSVS	9	Unmodified	_QGGLWLSVS_					0	0	0			REV__ENST00000601919.5_1_19:18542647-18543480:+|nuORF	REV__ENST00000601919.5_1_19:18542647-18543480:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.24420166015625	2	473.753267	945.491981	-0.018663	-8.8418E-06	2.0782	0.00098455	2.0595	0.00097571	473.7546133362882	45.616	0.40038	45.465	45.211	45.611	-0.15156					16	11	2	0	0	0	0.024294	1	4451	4451		37.159	6.6555	1	335390	+		62008	35865	43644	43706	67157	67157					0.017054983804428048
QGGLWPERWL	10	Unmodified	_QGGLWPERWL_					0	0	0			REV__nc|ENSG00000130821|P48029-2|SLC6A8	REV__nc|ENSG00000130821|P48029-2|SLC6A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2481994628906	3	414.552374	1240.63529	-0.72605	-0.00030099	0.36406	0.00015092	-0.362	-0.00015007	414.88667741465014	36.108	0.31246	36.065	35.896	36.208	-0.042458					13	8	2	0	0	0	0.03519	1	2801	2801		29.17	0	1	65717	+		62009	36653	43645	43707	67158	67158					0.024599254915074198
QGGPEVAF	8	Unmodified	_QGGPEVAF_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.2123107910156	2	402.697961	803.381368	1.8564	0.00074759	-1.3256	-0.00053383	0.53081	0.00021376	402.6973443790337	36.484	0.34598	36.522	36.338	36.684	0.038044					14	9	2	0	0	0	0.027866	1	2816	2816		19.36	0	1	140830			62010	18310	43646	43708	67159	67159					-0.028187216078094934
QGGPFGGPL	9	Unmodified	_QGGPFGGPL_					0	0	0			REV__ENSG00000138279|ENST00000372921|ANXA7	REV__ENSG00000138279|ENST00000372921|ANXA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2404479980469	2	415.213778	828.413003	0.14117	5.8617E-05	-0.41586	-0.00017267	-0.27469	-0.00011405	415.21166068611365	33.591	0.67612	33.648	33.461	34.137	0.056568					29	16	3	0	0	0	0.024258	1	2430	2430		12.959	1.4482	1	171700	+		62011	23837	43647	43709	67160	67160					-0.008067288538541106
QGGPGLVMGI	10	Unmodified	_QGGPGLVMGI_					0	0	0			REV__MYEF2|p.G337V|1|0.24|ENSG00000104177|chr15:48153869-48153869|C/A|missense_variant	REV__MYEF2|p.G337V|1|0.24|ENSG00000104177|chr15:48153869-48153869|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2792053222656	2	464.74967	927.484787	-0.17693	-8.2226E-05	-1.9982	-0.00092868	-2.1752	-0.0010109	464.74808598148024	51.937	0.63008	51.937	51.568	52.198	0					30	17	3	0	0	0	0.03519	1	5539	5539		44.117	8.9161	1	507280	+		62012	36404	43648	43710	67161	67161					0.018144425083505666
QGGPGQDLGVT	11	Unmodified	_QGGPGQDLGVT_					0	0	0			REV__ENST00000330133.4_1_19:3767430-3767541:+|nuORF	REV__ENST00000330133.4_1_19:3767430-3767541:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3170166015625	2	514.753995	1027.49344	-0.74468	-0.00038333	0.58426	0.00030075	-0.16042	-8.2578E-05	514.7541778708782	32.024	1.3996	32.087	31.64	33.039	0.062889					54	35	2	0	0	0	0.024745	1	2185	2185		20.837	3.4722	1	252510	+		62013	30450	43649	43711	67162	67162					-0.019209123214750434
QGGQRKGLD	9	Unmodified	_QGGQRKGLD_					0	0	0			REV__ENSG00000035681|ENST00000038176|NSMAF	REV__ENSG00000035681|ENST00000038176|NSMAF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7431335449219	2	479.756872	957.499192	-0.36773	-0.00017642	-4.1281	-0.0019805	-4.4959	-0.0021569	479.75478910576555	45.632	0.64525	45.481	45.211	45.856	-0.15157					40	18	4	0	0	0	0.024292	1	4407	4407		25.574	11.437	1	1302400	+		62014	20062	43650	43712	67163	67163					0.018742309808544633
QGGRDEDN	8	Unmodified	_QGGRDEDN_					0	0	0			REV__nc|ENSG00000250366|A0A1B0GTB2|TUNAR	REV__nc|ENSG00000250366|A0A1B0GTB2|TUNAR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.7456970214844	2	445.68357	889.352587	-0.19557	-8.7161E-05	2.5236	0.0011247	2.3281	0.0010376	445.68321906976803	24.606	0.21402	24.431	24.34	24.554	-0.17484					6	4	2	0	0	0	0.027866	1	1079	1079		8.6937	0	1	20853	+		62015	29024	43651	43713	67164	67164					-0.09651490974908938
QGGRKQAP	8	Unmodified	_QGGRKQAP_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7442321777344	2	421.235576	840.456599	-0.41103	-0.00017314	-0.38013	-0.00016013	-0.79117	-0.00033327	421.23535085285437	27.389	0.86467	27.389	26.825	27.689	0					37	22	2	0	0	0	0.027866	1	1508	1508		35.201	12.158	1	541570			62016	4640	43652	43714	67165	67165					0.029988806432811543
QGGRKQAP	8	Unmodified	_QGGRKQAP_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.7439880371094	2	421.235576	840.456599	-0.78371	-0.00033013	0.16918	7.1265E-05	-0.61453	-0.00025886	421.23538637941334	27.144	0.94237	27.226	26.629	27.571	0.081293					32	24	2	0	0	0	0.027866	1	1428	1428		33.516	3.0119	1	744100			62017	4640	43652	43714	67166	67166					0.029988806432811543
QGGRLILI	8	Unmodified	_QGGRLILI_					0	0	0		ENST00000479103.1_1_10:124757958-124758141:-|nuORF	ENST00000479103.1_1_10:124757958-124758141:-|nuORF	ENST00000479103.1_1_10:124757958-124758141:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.5471496582031	2	435.281995	868.549437	-0.40626	-0.00017684	2.6527	0.0011547	2.2465	0.00097785	435.28250546104056	29.089	0.76635	28.916	28.723	29.49	-0.17258					22	17	2	0	0	0	0.027866	1	1818	1818		12.959	0	1	53080			62018	15162	43653	43715	67167	67167					0.10990385376669565
QGGRLILI	8	Unmodified	_QGGRLILI_					0	0	0		ENST00000479103.1_1_10:124757958-124758141:-|nuORF	ENST00000479103.1_1_10:124757958-124758141:-|nuORF	ENST00000479103.1_1_10:124757958-124758141:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	435.281995	868.549437	0.093839	4.0846E-05	0.8933	0.00038884	0.98714	0.00042969	435.2822176400517	29.143	0.34481	28.994	28.784	29.129	-0.14952	0.038652	-0.00073631	NaN	7.6903	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44568			62019	15162	43653	43715							0.10990385376669565
QGGRPDLL	8	Unmodified	_QGGRPDLL_					0	0	0		ENSG00000164746|ENST00000348904|C7orf57	ENSG00000164746|ENST00000348904|C7orf57	ENSG00000164746|ENST00000348904|C7orf57	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.75823974609375	2	428.237784	854.461016	-0.30144	-0.00012909	-0.32178	-0.0001378	-0.62322	-0.00026689	428.2375679335184	41.786	0.43819	41.654	41.387	41.825	-0.1322					25	11	3	0	0	0	0.027866	1	3724	3724		37.159	16.677	1	232610			62020	7317	43654	43716	67168	67168					0.027963450661786737
QGGSLLVVLS	10	Unmodified	_QGGSLLVVLS_					0	0	0			REV__ADCY1|p.S711L|1|0.34|ENSG00000164742|chr7:45686020-45686020|C/T|missense_variant	REV__ADCY1|p.S711L|1|0.34|ENSG00000164742|chr7:45686020-45686020|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7895812988281	2	486.78985	971.565146	-1.4062	-0.00068454	0.96123	0.00046792	-0.445	-0.00021662	486.79019026439306	51.715	0.90561	51.802	51.411	52.316	0.087006					56	24	3	0	0	0	0.77808	1	5443	5443		62.107	1.8135	1	3779700	+		62021	19072	43655	43717	67169	67169					0.07822627103041668
QGGTDLRVLI	10	Unmodified	_QGGTDLRVLI_					0	0	0			REV__ENSG00000164867|ENST00000297494|NOS3	REV__ENSG00000164867|ENST00000297494|NOS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3113403320312	2	536.31148	1070.60841	-0.66715	-0.0003578	0.98845	0.00053012	0.3213	0.00017232	536.3120255330238	96.983	0.75471	96.983	96.615	97.37	0					40	16	3	0	0	0	1.0545	1	12376	12376		38.754	0.94209	1	520020	+		62022	25810	43656	43718	67170	67170					0.07592816880332975
QGGTKLVKDL	10	Unmodified	_QGGTKLVKDL_					0	0	0		ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8118896484375	2	529.813856	1057.61316	-1.0438	-0.00055302	2.2847	0.0012105	1.2409	0.00065744	529.8147453348229	68.869	0.65999	68.607	68.424	69.084	-0.26166					26	15	2	0	0	0	0.03519	1	7968	7968		33.922	0	1	93289			62023	7308	43657	43719	67171	67171					0.0866570102307378
QGGYKALTIL	10	Unmodified	_QGGYKALTIL_					0	0	0			REV__ENST00000461434.1_1_1:151227258-151234901:+|nuORF	REV__ENST00000461434.1_1_1:151227258-151234901:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2749633789062	2	532.310949	1062.60735	-0.21877	-0.00011645	-3.0559	-0.0016267	-3.2747	-0.0017432	532.3093412304598	79.61	2.2259	79.391	78.146	80.372	-0.21923					87	52	2	0	0	0	0.03519	1	9365	9365		47.657	20.964	1	238250	+		62024	32876	43658	43720	67172	67172					0.07854602511406483
QGHISPAL	8	Unmodified	_QGHISPAL_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.2557678222656	2	411.727052	821.439552	0.53837	0.00022166	2.076	0.00085477	2.6144	0.0010764	411.7273243103237	21.035	0.83455	20.839	20.484	21.319	-0.19577					23	16	2	0	0	0	0.027866	1	606	606		26.796	5.8492	1	52398			62025	1314	43659	43721	67173	67173					0.021689600374770635
QGHISPAL	8	Unmodified	_QGHISPAL_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	411.727052	821.439552	-0.18522	-7.6258E-05	1.1095	0.0004568	0.92426	0.00038054	411.7272280231865	20.431	0.47994	20.431	20.176	20.656	0	-0.19635	0.00045033	NaN	26.796	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10335			62026	1314	43659	43721							0.021689600374770635
QGHISPAL	8	Unmodified	_QGHISPAL_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	411.727052	821.439552	0.03597	1.481E-05	-0.17463	-7.1901E-05	-0.13866	-5.7091E-05	411.7269285796351	20.718	0.32761	20.613	20.424	20.752	-0.10477	-0.014795	-0.00060708	NaN	26.796	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9586.1			62027	1314	43659	43721							0.021689600374770635
QGHPHGWAR	9	Unmodified	_QGHPHGWAR_					0	0	0			REV__ENST00000490842.5_1_7:97862595-97863063:-|nuORF	REV__ENST00000490842.5_1_7:97862595-97863063:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2568359375	2	523.257374	1044.50019	-0.52984	-0.00027724	0.052928	2.7695E-05	-0.47691	-0.00024955	523.2573682011821	22.883	1.5005	22.822	21.807	23.308	-0.06086					102	32	5	0	0	0	0.59099	1	824	824		53.351	2.1588	1	2616500	+		62028	33712	43660	43722	67174	67174					-0.02027509859590282
QGILFRFRA	9	Unmodified	_QGILFRFRA_					0	0	0			REV__ENSG00000171989|ENST00000307144|LDHAL6B	REV__ENSG00000171989|ENST00000307144|LDHAL6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.78271484375	2	554.324725	1106.6349	-0.61115	-0.00033878	-4.0346	-0.0022365	-4.6458	-0.0025753	554.3224630121234	81.129	2.3647	80.986	80.413	82.778	-0.14248					122	55	3	0	0	0	0.024262	1	9948	9948		38.806	0	1	212420	+		62029	26625	43661	43723	67175	67175					0.08584550562318327
QGIPNNLMPY	10	Unmodified	_QGIPNNLMPY_					0	0	0		nc|ENSG00000117308|Q14376-2|GALE;ENSG00000117308|ENST00000617979|GALE;ENST00000459934.5_1_1:24122658-24127224:-|nuORF	nc|ENSG00000117308|Q14376-2|GALE	nc|ENSG00000117308|Q14376-2|GALE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.7852783203125	2	573.784241	1145.55393	-0.26384	-0.00015139	2.2925	0.0013154	2.0287	0.001164	573.7853724337155	70.352	1.0686	70.352	70.116	71.185	0					63	27	3	0	0	0	0.79525	1	8498	8498		60.972	5.4677	1	2575100			62030	3620	43662	43724	67176	67176					-0.013025182627643517
QGIRIEKSA	9	Unmodified	_QGIRIEKSA_					0	0	0		nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF;nc|ENSG00000179299|Q8NE18-2|NSUN7;ENSG00000179299|ENST00000381782|NSUN7	nc|ENSG00000179299|Q8NE18-3|NSUN7	nc|ENSG00000179299|Q8NE18-3|NSUN7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.29052734375	2	501.290548	1000.56654	0.26855	0.00013462	-0.67377	-0.00033776	-0.40522	-0.00020314	501.29013148905653	98.06	1.8047	98.07	97.728	99.533	0.010239					61	41	2	0	0	0	0.91321	1	12483	12483		31.53	1.2121	1	1873800			62031	8889	43663	43725	67177	67177					0.06628261191804086
QGIRRLKE	8	Unmodified	_QGIRRLKE_					0	0	0		nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.30682373046875	2	500.306532	998.598512	-0.67472	-0.00033757	0.33474	0.00016747	-0.33998	-0.00017009	500.3065616954111	31.182	1.2354	31.182	30.634	31.869	0					65	29	4	0	0	0	0.99042	1	2064	2064		38.806	1.647	1	2674300			62032	8619	43664	43726	67178	67178					0.09915673665602753
QGIRRLKE	8	Unmodified	_QGIRRLKE_					0	0	0		nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3069763183594	2	500.306532	998.598512	-0.38352	-0.00019188	0.13537	6.7724E-05	-0.24815	-0.00012415	500.30646139978785	31.094	1.2358	31.106	30.627	31.863	0.011797					62	29	4	0	0	0	0.94517	1	2029	2029		45.952	1.8352	1	2519200			62033	8619	43664	43726	67179	67179					0.09915673665602753
QGISLKTL	8	Unmodified	_QGISLKTL_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.265869140625	2	430.26601	858.517468	-0.5254	-0.00022606	0.25621	0.00011024	-0.26919	-0.00011583	430.26613061274514	48.43	1.7729	48.43	48.105	49.878	0					124	49	5	0	0	0	0.2917	1	4933	4933		115.46	0	1	22412000	+		62034	19268	43665	43727	67180	67180					0.08254972902852842
QGISLKTL	8	Unmodified	_QGISLKTL_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.26605224609375	2	430.26601	858.517468	-0.43437	-0.0001869	0.33566	0.00014442	-0.098719	-4.2475E-05	430.2661537896907	48.602	1.6542	48.45	48.125	49.779	-0.15277					117	45	5	0	0	0	0.2917	1	4971	4971		115.46	0	1	19681000	+		62035	19268	43665	43727	67181	67181					0.08254972902852842
QGIVRFYGK	9	Unmodified	_QGIVRFYGK_					0	0	0		ENSG00000105270|ENST00000360535|CLIP3	ENSG00000105270|ENST00000360535|CLIP3	ENSG00000105270|ENST00000360535|CLIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7732543945312	2	534.303458	1066.59236	-0.76273	-0.00040753	1.817	0.00097082	1.0543	0.00056329	534.3046480270874	47.939	0.17413	47.663	47.527	47.701	-0.27598					7	4	2	0	0	0	0.024541	1	4707	4707		24.203	12.692	1	63304			62036	2654	43666	43728	67182	67182					0.061731554340894945
QGIYPFLLD	9	Unmodified	_QGIYPFLLD_					0	0	0		chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66;chr8:127290060-127311835|129|17.6|0.0|12.04|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|13;chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|69;chr2:222572022-222586338|114|12.89|0.25|5.66|-|2|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|54;chr2:113477199-113482177|353|19.55|0.21|6.52|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|65;chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|64	chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66	chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.774169921875	2	533.2844	1064.55425	-0.31881	-0.00017001	-3.6147	-0.0019276	-3.9335	-0.0020977	533.2820050972363	47.26	0.48822	47.164	46.897	47.385	-0.096653					19	12	2	0	0	0	0.024506	1	4644	4644		16.473	0	1	455790			62037	346	43667	43729	67183	67183					0.024552247287601858
QGIYVLGNL	9	Unmodified	_QGIYVLGNL_					0	0	0			REV__ENST00000473371.1_1_13:39613176-39613868:+|nuORF	REV__ENST00000473371.1_1_13:39613176-39613868:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7772216796875	2	488.776742	975.538931	0.31806	0.00015546	0.27533	0.00013458	0.59339	0.00029004	488.77670196971843	61.818	0.64056	61.591	61.047	61.687	-0.22663					40	16	3	0	0	0	0.31037	1	7147	7147		74.255	15.473	1	3210700	+		62038	28068	43668	43730	67184	67184					0.05018357931567152
QGKAKLVI	8	Unmodified	_QGKAKLVI_					0	0	0		ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENSG00000156482|ENST00000287038|RPL30	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	ENST00000518164.5_1_8:99037863-99057595:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7376708984375	2	428.78437	855.554188	-0.73213	-0.00031392	1.0588	0.00045399	0.32667	0.00014007	428.7847492696094	24.897	0.31134	24.897	24.697	25.009	0					11	6	2	0	0	0	0.027866	1	1127	1127		52.299	11.727	1	88877			62039	6533	43669	43731	67185	67185					0.12063269519410369
QGKDEVLL	8	Unmodified	_QGKDEVLL_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.24786376953125	2	451.2531	900.491647	-0.21624	-9.7577E-05	-3.5673	-0.0016097	-3.7835	-0.0017073	451.24998592801467	39.625	2.8572	39.396	38.906	41.763	-0.22836					114	75	3	0	0	0	0.89627	1	3384	3384		51.335	1.8939	1	3105100	+		62040	28033	43670	43732	67186	67186					0.03742078660570769
QGKILRSEL	9	Unmodified	_QGKILRSEL_					0	0	0		ENST00000460472.6_3_2:179604977-179605040:-|nuORF	ENST00000460472.6_3_2:179604977-179605040:-|nuORF	ENST00000460472.6_3_2:179604977-179605040:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7897338867188	2	522.314023	1042.61349	-0.58544	-0.00030578	0.10142	5.2972E-05	-0.48402	-0.00025281	522.3145094245089	84.382	0.20837	84.409	84.249	84.457	0.026558					6	4	2	0	0	0	0.024405	1	10465	10465		27.882	0	1	26185			62041	14656	43671	43733	67187	67187					0.0938912074293512
QGKKVEGAPT	10	Unmodified	_QGKKVEGAPT_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	507.782556	1013.55056	-0.58874	-0.00029895	0.38344	0.00019471	-0.2053	-0.00010425	508.2853979418318	22.935	0.80444	22.935	22.479	23.283	0					24	17	2	0	0	0	0.03519	1	803	803		79.713	5.7379	1	44134			62042	4149	43672	43734	67188	67188					0.04432554954905754
QGKLIGAIET	10	Unmodified	_QGKLIGAIET_					0	0	0			REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2896728515625	2	515.300581	1028.58661	-0.14427	-7.4344E-05	-1.493	-0.00076935	-1.6373	-0.0008437	515.2999446584463	34.012	0.77612	34.008	33.715	34.491	-0.0045624					44	19	3	0	0	0	0.03519	1	2479	2479		36.447	3.6343	1	2463800	+		62043	36436	43673	43735	67189	67189					0.07346012131756652
QGKLIGAIET	10	Unmodified	_QGKLIGAIET_					0	0	0			REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3004150390625	2	515.300581	1028.58661	-1.0296	-0.00053056	-0.51543	-0.0002656	-1.545	-0.00079616	515.3004254500506	34.005	0.75276	34.055	33.765	34.518	0.050255					47	18	3	0	0	0	0.26927	1	2462	2462		112.41	5.7279	1	2345900	+		62044	36436	43673	43735	67190	67190					0.07346012131756652
QGKLIGAIET	10	Unmodified	_QGKLIGAIET_					0	0	0			REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2896118164062	2	515.300581	1028.58661	-1.0296	-0.00053056	-0.51543	-0.0002656	-1.545	-0.00079616	515.3004254500506	34.005	0.75276	34.055	33.765	34.518	0.050255					47	18	3	0	0	0	0.03519	1	2446	2446		54.776	13.998	1	2345900	+		62045	36436	43673	43735	67191	67191					0.07346012131756652
QGKLSLISS	9	Unmodified	_QGKLSLISS_					0	0	0		ENST00000357628.7_1_7:124538411-124568991:-|nuORF	ENST00000357628.7_1_7:124538411-124568991:-|nuORF	ENST00000357628.7_1_7:124538411-124568991:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.77490234375	2	466.7742	931.533846	0.012378	5.7778E-06	0.90238	0.00042121	0.91476	0.00042698	466.774504831433	19.567	0.53164	19.448	19.2	19.731	-0.11872					25	10	4	0	0	0	0.80003	1	425	425		39.253	0.44669	1	177590			62046	12700	43674	43736	67192	67192					0.06534054068947626
QGKPNKKV	8	Unmodified	_QGKPNKKV_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.74322509765625	2	449.777077	897.5396	-0.23634	-0.0001063	0.34079	0.00015328	0.10445	4.6979E-05	449.7771371904083	27.737	1.3243	27.724	26.953	28.277	-0.012983					47	34	3	0	0	0	0.027866	1	1456	1456		42.474	5.3154	1	223720			62047	4907	43675	43737	67193	67193					0.08673197371274455
QGKQLKLL	8	Unmodified	_QGKQLKLL_					0	0	0			REV__ENST00000464348.5_1_1:201816704-201817560:+|nuORF	REV__ENST00000464348.5_1_1:201816704-201817560:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2791442871094	2	464.302927	926.591301	0.63733	0.00029591	1.0124	0.00047006	1.6497	0.00076597	464.3037268330508	51.854	0.47827	51.67	51.337	51.815	-0.18404					15	12	2	0	0	0	0.027866	1	5325	5325		20.482	0	1	88317	+		62048	32970	43676	43738	67194	67194					0.125069410651804
QGKQQLMPQ	9	Unmodified	_QGKQQLMPQ_					0	0	0		ENSG00000140521|ENST00000268124|POLG;ENST00000526573.1_1_15:89867018-89868712:-|nuORF;ENST00000532584.5_1_15:89865171-89868823:-|nuORF	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8031005859375	2	529.276583	1056.53861	0.51876	0.00027457	4.3046	0.0022783	4.8233	0.0025529	529.2784096189998	64.078	0.72812	64.078	63.81	64.538	0					37	19	2	0	0	0	0.024374	1	7536	7536		32.812	6.1195	1	1389900			62049	5420	43677	43739	67195	67195					0.012606149400653521
QGLALTMVK	9	Oxidation (M)	_QGLALTM(Oxidation (M))VK_		QGLALTM(1)VK		QGLALTM(77)VK	0	0	1		ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.77691650390625	2	488.778428	975.542302	-0.51026	-0.00024941	-2.7627	-0.0013504	-3.273	-0.0015998	488.7769560760507	61.922	1.1582	61.922	60.958	62.117	0					87	30	4	0	0	0	0.28753	1	7131	7131		77.318	8.5308	1	5190400			62050	8363	43678	43740	67196	67196		344			0.05355284713925812
QGLAVWTI	8	Unmodified	_QGLAVWTI_					0	0	0		ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.2532958984375	2	444.252903	886.491253	-0.012372	-5.4961E-06	-3.224	-0.0014323	-3.2364	-0.0014378	444.25196265010027	28.882	2.6407	28.963	28.411	31.051	0.080811					155	64	4	0	0	0	0.42327	1	1678	1678		94.006	0.81096	1	155110000			62051	9324	43679	43741	67197	67197					0.0434670373138033
QGLELEAR	8	Unmodified	_QGLELEAR_					0	0	0			REV__ENST00000459638.5_3_3:69591404-69591638:-|nuORF	REV__ENST00000459638.5_3_3:69591404-69591638:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2301025390625	2	458.248349	914.482145	-0.42863	-0.00019642	0.024109	1.1048E-05	-0.40452	-0.00018537	458.24805191240824	29.485	0.73769	29.488	29.014	29.751	0.0031376					29	18	2	0	0	0	0.027866	1	1733	1733		39.253	0	1	560180	+		62052	32825	43680	43742	67198	67198					0.02148310375048368
QGLERRID	8	Unmodified	_QGLERRID_					0	0	0		nc|ENSG00000139631|Q9Y600-2|CSAD;ENSG00000139631|ENST00000444623|CSAD;nc|ENSG00000139631|Q9Y600-3|CSAD;ENST00000475890.5_1_12:53552117-53555118:-|nuORF	nc|ENSG00000139631|Q9Y600-2|CSAD	nc|ENSG00000139631|Q9Y600-2|CSAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7939453125	2	493.772522	985.530492	1.0537	0.00052027	-1.3171	-0.00065034	-0.26342	-0.00013007	493.76865980958837	63.126	0.5521	63.181	62.931	63.483	0.054104					36	14	4	0	0	0	0.027866	1	7263	7263		40.778	0	1	406040			62053	5351	43681	43743	67199	67199					0.03714804014953188
QGLFLPLAL	9	Unmodified	_QGLFLPLAL_					0	0	0		ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7792053222656	2	486.299853	970.585153	0.49046	0.00023851	-3.8162	-0.0018558	-3.3257	-0.0016173	486.29761170838674	72.93	0.28441	72.648	72.425	72.709	-0.28124					11	6	2	0	0	0	0.024535	1	8828	8828		33.516	8.0654	1	789890			62054	11708	43682	43744	67200	67200					0.09868422833653767
QGLGLGPVFLS	11	Unmodified	_QGLGLGPVFLS_					0	0	0			REV__ENST00000309890.11_1_17:3827865-3828672:-|nuORF	REV__ENST00000309890.11_1_17:3827865-3828672:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8270263671875	2	544.310949	1086.60735	-0.58117	-0.00031634	3.2496	0.0017688	2.6685	0.0014525	544.3126754576176	74.986	0.72295	74.986	74.509	75.232	0					29	17	2	0	0	0	0.024762	1	9140	9140		37.812	22.17	1	446360	+		62055	30172	43683	43745	67201	67201					0.06750602511442594
QGLKIKDDL	9	Unmodified	_QGLKIKDDL_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.3001098632812	2	515.300581	1028.58661	-0.54273	-0.00027967	-0.83594	-0.00043076	-1.3787	-0.00071043	515.3001049086389	34.213	0.77432	34.213	33.894	34.668	0					49	19	3	0	0	0	0.048057	1	2547	2547		129.42	30.839	1	2322000	+		62056	23897	43684	43746	67202	67202					0.07346012131756652
QGLKIYTPG	9	Unmodified	_QGLKIYTPG_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.7765808105469	2	488.776742	975.538931	-0.51026	-0.00024941	0.68547	0.00033504	0.1752	8.5635E-05	488.7769560760507	61.922	1.1582	61.922	60.958	62.117	0					87	30	4	0	0	0	0.33245	1	7142	7142		71.296	0	1	5190400	+		62057	23378	43685	43747	67203	67203					0.05018357931578521
QGLKIYTPG	9	Unmodified	_QGLKIYTPG_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.77691650390625	2	488.776742	975.538931	0.31806	0.00015546	0.27533	0.00013458	0.59339	0.00029004	488.77670196971843	61.818	0.64056	61.591	61.047	61.687	-0.22663					40	16	3	0	0	0	0.18915	2	7135	7123;7135		90.777	0	1	3210700	+		62058	23378	43685	43747	67204;67205	67205					0.05018357931578521
QGLLKQPVP	9	Unmodified	_QGLLKQPVP_					0	0	0			REV__ENST00000394487.4_1_9:120466610-120466751:+|nuORF	REV__ENST00000394487.4_1_9:120466610-120466751:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.27154541015625	2	490.300384	978.586216	0.0593	2.9075E-05	-0.099466	-4.8768E-05	-0.040166	-1.9694E-05	490.3003076899242	63.742	0.50206	63.49	63.228	63.73	-0.25141					31	13	3	0	0	0	0.024523	1	7401	7401		21.96	5.2549	1	388480	+		62059	31670	43686	43748	67206	67206					0.09606637202557522
QGLLRSLFKST	11	Unmodified	_QGLLRSLFKST_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	625.3668212890625	2	625.366787	1248.71902	0.43075	0.00026937	-0.56026	-0.00035037	-0.12952	-8.0997E-05	625.3662978121002	105.37	0.52142	105.2	105.07	105.59	-0.16484					36	14	3	0	0	0	0.81748	1	13107	13107		56.632	5.4396	1	2623700			62060	9025	43687	43749	67207	67207					0.10461036868559859
QGLLWASTI	9	Unmodified	_QGLLWASTI_					0	0	0		ENST00000527820.5_1_11:75164008-75167814:-|nuORF	ENST00000527820.5_1_11:75164008-75167814:-|nuORF	ENST00000527820.5_1_11:75164008-75167814:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.77825927734375	2	494.776742	987.538931	0.23856	0.00011803	-2.9282	-0.0014488	-2.6897	-0.0013308	494.7760034342217	21.092	0.92442	21.163	20.713	21.637	0.071487					40	18	5	0	0	0	0.72875	1	593	593		44.117	0	1	1437600			62061	16163	43688	43750	67208	67208					0.0446635793156247
QGLPVASQLF	10	Unmodified	_QGLPVASQLF_					0	0	0		ENST00000476833.5_1_3:98489996-98501153:+|nuORF	ENST00000476833.5_1_3:98489996-98501153:+|nuORF	ENST00000476833.5_1_3:98489996-98501153:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2964477539062	2	530.295299	1058.57605	-0.2063	-0.0001094	-1.9984	-0.0010597	-2.2047	-0.0011691	530.2946997501793	101.79	1.1661	101.66	101.07	102.23	-0.12666					45	28	3	0	0	0	1.1246	1	12679	12679		23.523	0.48021	1	123180			62062	15099	43689	43751	67209	67209					0.04910029477309763
QGLQRRNI	8	Unmodified	_QGLQRRNI_					0	0	0		ENSG00000173157|ENST00000389420|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;nc|ENSG00000173157|P59510-2|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.78729248046875	2	492.788507	983.562461	-0.29454	-0.00014515	1.2195	0.00060095	0.92495	0.0004558	492.7889430020566	78.55	0.75171	78.566	78.315	79.067	0.015907					42	17	4	0	0	0	0.93274	1	9655	9655		47.916	3.7988	1	1466200			62063	8345	43690	43752	67210	67210					0.07002216488751856
QGLRRELK	8	Unmodified	_QGLRRELK_					0	0	0			REV__ENST00000607252.5_1_6:43275164-43275533:-|nuORF	REV__ENST00000607252.5_1_6:43275164-43275533:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.306884765625	2	500.306532	998.598512	-0.67472	-0.00033757	0.33474	0.00016747	-0.33998	-0.00017009	500.3065616954111	31.182	1.2354	31.182	30.634	31.869	0					65	29	4	0	0	0	0.6536	1	2055	2055		71.296	10.324	1	2674300	+		62064	35948	43691	43753	67211	67211					0.09915673665614122
QGLSLKLLG	9	Unmodified	_QGLSLKLLG_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2742004394531	2	464.794935	927.575317	0.24389	0.00011336	-0.15979	-7.427E-05	0.084096	3.9087E-05	464.7946651154599	52.337	0.61882	52.19	51.95	52.569	-0.14735					34	15	3	0	0	0	0.024374	1	5548	5548		58.782	24.609	1	932530			62065	6592	43692	43754	67212	67212					0.10863234828275381
QGLSQRQV	8	Unmodified	_QGLSQRQV_					0	0	0			REV__ENST00000483312.1_1_3:149075198-149075231:-|nuORF	REV__ENST00000483312.1_1_3:149075198-149075231:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2293701171875	2	458.253966	914.493378	-0.41029	-0.00018802	2.2336	0.0010236	1.8233	0.00083555	458.25415482742073	28.942	0.49014	28.945	28.713	29.204	0.0031357					30	11	4	0	0	0	0.027866	1	1717	1717		79.451	30.009	1	745300	+		62066	33505	43693	43755	67213	67213					0.032711324691945265
QGLTGEKPRA	10	Unmodified	_QGLTGEKPRA_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2760620117188	2	528.793455	1055.57236	-0.66074	-0.00034939	-1.0027	-0.00053023	-1.6635	-0.00087962	528.7922060700031	49.016	0.46501	48.863	48.646	49.111	-0.15277					12	12	2	0	0	0	0.03519	1	5049	5049		32.751	12.754	1	59084			62067	10774	43694	43756	67214	67214					0.046793597034593404
QGLVKPLLL	9	Unmodified	_QGLVKPLLL_					0	0	0		ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.7693786621094	2	490.828778	979.643003	-0.56603	-0.00027782	0.52646	0.0002584	-0.03957	-1.9422E-05	490.8288505796691	42.006	0.63066	41.883	41.603	42.234	-0.12299					40	16	3	0	0	0	0.024541	1	3808	3808		17.365	0	1	1079400			62068	12358	43695	43757	67215	67215					0.15236684759088348
QGLVKPLLL	9	Unmodified	_QGLVKPLLL_					0	0	0		ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.828778	979.643003	0.31807	0.00015612	-0.19039	-9.3447E-05	0.12768	6.2669E-05	490.82841080534484	41.981	0.32719	41.981	41.793	42.12	0	-0.0042125	-0.00043302	NaN	17.365	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131810			62069	12358	43695	43757							0.15236684759088348
QGLVKPLLL	9	Unmodified	_QGLVKPLLL_					0	0	0		ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.828778	979.643003	-0.29522	-0.0001449	0.3347	0.00016428	0.039483	1.9379E-05	490.8286341453573	42.035	0.39606	42.061	41.893	42.289	0.026012	0.075595	8.2442E-05	NaN	17.365	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104370			62070	12358	43695	43757							0.15236684759088348
QGLWLLGL	8	Unmodified	_QGLWLLGL_					0	0	0		ENSG00000177238|ENST00000322122|TRIM72	ENSG00000177238|ENST00000322122|TRIM72	ENSG00000177238|ENST00000322122|TRIM72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2539367675781	2	450.271096	898.527639	-0.2774	-0.0001249	-4.2191	-0.0018998	-4.4965	-0.0020247	450.2691542723961	36.713	0.40659	36.751	36.478	36.884	0.038044					17	10	2	0	0	0	0.027866	1	2899	2899		35.201	5.3592	1	210400			62071	8722	43696	43758	67216	67216					0.07431580628076517
QGLYVTLVT	9	Unmodified	_QGLYVTLVT_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2951965332031	2	497.2844	992.554247	0.37151	0.00018475	-0.04028	-2.003E-05	0.33123	0.00016472	497.283944114758	61.724	0.72069	61.497	61.082	61.803	-0.22663					29	18	3	0	0	0	0.023817	1	7079	7079		34.173	0	1	596210			62072	4740	43697	43759	67217	67217					0.057672247287769096
QGNKKNLVK	9	Unmodified	_QGNKKNLVK_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7980346679688	2	514.81419	1027.61383	-1.0841	-0.00055813	0.17362	8.9384E-05	-0.91052	-0.00046875	514.8141583774762	35.626	0.57738	35.626	35.417	35.994	0					38	14	4	0	0	0	0.024506	1	2727	2727		16.473	0	1	446550	+		62073	20974	43698	43760	67218	67218					0.1011254046279646
QGNKLLGGSV	10	Unmodified	_QGNKLLGGSV_					0	0	0		nc|ENSG00000197951|Q9NQZ8|ZNF71;ENSG00000197951|ENST00000599599|ZNF71	nc|ENSG00000197951|Q9NQZ8|ZNF71	nc|ENSG00000197951|Q9NQZ8|ZNF71	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7952880859375	2	486.777274	971.539994	0.74989	0.00036503	1.4923	0.00072643	2.2422	0.0010915	486.7771674477723	20.118	0.486	19.894	19.631	20.117	-0.22344					19	9	3	0	0	0	0.03519	1	481	481		47.657	0	1	54461			62074	10071	43699	43761	67219	67219					0.05308572300475589
QGNKRVHF	8	Unmodified	_QGNKRVHF_					0	0	0		ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7976989746094	2	493.26995	984.525347	0.30631	0.00015109	4.0116	0.0019788	4.3179	0.0021299	493.2717369220131	61.571	0.52899	61.344	61.082	61.611	-0.22663					23	13	2	0	0	0	0.027866	1	7056	7056		20.482	7.5226	1	378000			62075	8215	43700	43762	67220	67220					0.03246544942987839
QGNKRVHF	8	Unmodified	_QGNKRVHF_					0	0	0		ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.26995	984.525347	0.513	0.00025305	3.9363	0.0019416	4.4493	0.0021947	493.271485302465	61.373	0.46038	61.373	61.144	61.605	0	0.022238	3.6582E-05	NaN	13.775	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342970			62076	8215	43700	43762							0.03246544942987839
QGNKRVHF	8	Unmodified	_QGNKRVHF_					0	0	0		ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.26995	984.525347	0.21384	0.00010548	3.6887	0.0018195	3.9026	0.001925	493.2716049420708	61.264	0.41949	61.335	61.131	61.551	0.071125	-0.015654	-0.00020763	NaN	13.775	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438850			62077	8215	43700	43762							0.03246544942987839
QGPALLSFPC	10	Carbamidomethyl (C)	_QGPALLSFPC(Carbamidomethyl (C))_	QGPALLSFPC(1)		QGPALLSFPC(96)		0	1	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.2747802734375	2	545.273509	1088.53247	-0.48422	-0.00026403	1.8757	0.0010227	1.3914	0.00075871	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.42446	1	9602	9602		96.19	16.478	1	63206000	+		62078	25698	43701	43763	67221	67221	341				-0.008259032914565978
QGPARRVG	8	Unmodified	_QGPARRVG_					0	0	0			REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF	REV__ENST00000568025.1_1_6:166796808-166797144:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.7438659667969	2	420.743568	839.472583	-0.36885	-0.00015519	0.33052	0.00013906	-0.038333	-1.6128E-05	420.74375652988215	27.567	1.6254	27.554	27.241	28.867	-0.012983					105	40	4	0	0	0	1.0133	1	1504	1504		35.201	0	1	8988000	+		62079	35331	43702	43764	67222	67222					0.046425868801861725
QGPAVHVRLL	10	Unmodified	_QGPAVHVRLL_					0	0	0			REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	REV__ENST00000477647.1_1_3:122514002-122598222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.2747802734375	2	545.330008	1088.64546	-0.64597	-0.00035227	-2.7462	-0.0014976	-3.3922	-0.0018499	545.327746598042	77.875	0.36965	77.875	77.672	78.042	0					11	8	2	0	0	0	0.03519	1	9602	9602		76.774	0	1	80563	+		62080	33339	43703	43765	67223	67223					0.10468533216771903
QGPGRKPRRR	10	Unmodified	_QGPGRKPRRR_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H318Tfs*10|1|0.29|ENSG00000164889|chr7:151066974-151066974|C/-|frameshift_variant	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.361572265625	2	604.365779	1206.717	-0.25622	-0.00015485	1.8273	0.0011044	1.5711	0.0009495	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	1.1314	1	12966	12966		10.265	0	1	4809400			62081	7335	43704	43766	67224	67224					0.12191465693967984
QGPGTGTRDVF	11	Unmodified	_QGPGTGTRDVF_					0	0	0		ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	ENSG00000162227|ENST00000294168|TAF6L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.78173828125	2	567.780544	1133.54654	2.9078	0.001651	0.2183	0.00012395	3.1261	0.0017749	567.7805238134418	17.374	0.59455	17.374	17.102	17.697	0					28	11	3	0	0	0	1.0344	1	162	162		29.17	2.1227	1	202810			62082	6923	43705	43767	67225	67225					-0.014895345388140413
QGPLLLPLEPT	11	Unmodified	_QGPLLLPLEPT_					0	0	0			REV__ENST00000233813.4_1_2:217540818-217540989:-|nuORF	REV__ENST00000233813.4_1_2:217540818-217540989:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3428955078125	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0521	1	11768	11768		24.519	0	1	12648000	+		62083	29422	43706	43768	67226	67226					0.09415427371413898
QGPLLLPLEPT	11	Unmodified	_QGPLLLPLEPT_					0	0	0			REV__ENST00000233813.4_1_2:217540818-217540989:-|nuORF	REV__ENST00000233813.4_1_2:217540818-217540989:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0238	1	11401	11401		31.53	4.4825	1	15816000	+		62084	29422	43706	43768	67227	67227					0.09415427371413898
QGPLLLPLEPT	11	Unmodified	_QGPLLLPLEPT_					0	0	0			REV__ENST00000233813.4_1_2:217540818-217540989:-|nuORF	REV__ENST00000233813.4_1_2:217540818-217540989:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3433227539062	2	589.344989	1176.67542	-1.3212	-0.00077864	-2.2086	-0.0013016	-3.5297	-0.0020802	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	0.99553	1	11272	11272		37.812	0.65241	1	5175100	+		62085	29422	43706	43768	67228	67228					0.09415427371413898
QGPPERMHL	9	Oxidation (M)	_QGPPERM(Oxidation (M))HL_		QGPPERM(1)HL		QGPPERM(55)HL	0	0	1			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7640991210938	2	540.766383	1079.51821	-0.5647	-0.00030537	-3.175	-0.001717	-3.7397	-0.0020223	540.7645142367262	49.686	1.4253	49.686	49.249	50.675	0					129	40	5	0	0	0	0.56934	1	5171	5171		54.776	8.8041	1	5786300	+		62086	19929	43707	43769	67229	67229		615			-0.018365557197512317
QGPPKRLI	8	Unmodified	_QGPPKRLI_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.27740478515625	2	454.787444	907.560336	2.3919	0.0010878	-2.3403	-0.0010644	0.051581	2.3458E-05	454.786290653478	18.942	0.3462	18.709	18.483	18.829	-0.23345					12	6	3	0	0	0	0.027866	1	342	342		26.796	1.3459	1	66022	+		62087	20907	43708	43770	67230	67230					0.1028578775093365
QGPPKRLI	8	Unmodified	_QGPPKRLI_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	454.787444	907.560336	0.73626	0.00033484	-0.68543	-0.00031172	0.050836	2.312E-05	454.78712857962967	18.923	0.34547	18.767	18.594	18.939	-0.15637	0.02914	0.00055889	NaN	26.796	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77719	+		62088	20907	43708	43770							0.1028578775093365
QGPQELAVP	9	Unmodified	_QGPQELAVP_					0	0	0		ENST00000520794.1_1_5:179290450-179293075:-|nuORF	ENST00000520794.1_1_5:179290450-179293075:-|nuORF	ENST00000520794.1_1_5:179290450-179293075:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.75054931640625	2	469.750724	937.486896	-0.17104	-8.0345E-05	0.0047967	2.2532E-06	-0.16624	-7.8092E-05	469.7506065831071	30.336	1.8234	30.345	29.797	31.621	0.0086708					137	43	5	0	0	0	0.50848	1	1929	1929		58.782	0.55203	1	1093700			62089	15992	43709	43771	67231	67231					0.01565194517809232
QGPRAALTK	9	Unmodified	_QGPRAALTK_					0	0	0		ENST00000593262.1_1_17:41150505-41150664:+|nuORF	ENST00000593262.1_1_17:41150505-41150664:+|nuORF	ENST00000593262.1_1_17:41150505-41150664:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.80859375	2	471.279983	940.545414	0.77614	0.00036578	-0.81537	-0.00038427	-0.039233	-1.849E-05	471.2793755051244	41.1	0.81167	40.977	40.689	41.5	-0.12317					41	22	3	0	0	0	0.024427	1	3611	3611		19.997	0	1	570820			62090	17388	43710	43772	67232	67232					0.07276295882934392
QGPSAYSLL	9	Unmodified	_QGPSAYSLL_					0	0	0		ENST00000278903.10_1_11:125453599-125453758:+|nuORF	ENST00000278903.10_1_11:125453599-125453758:+|nuORF	ENST00000278903.10_1_11:125453599-125453758:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2456970214844	2	468.245275	934.475997	-0.29637	-0.00013877	-0.71762	-0.00033602	-1.014	-0.00047479	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	0.77768	1	13192	13192		40.778	0.20554	1	6721300			62091	11705	43711	43773	67233	67233					0.006137921435083626
QGPSREPHPT	10	Unmodified	_QGPSREPHPT_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.2725219726562	2	553.272887	1104.53122	0.032443	1.795E-05	-0.50868	-0.00028144	-0.47623	-0.00026349	553.2722648710959	77.599	1.4066	77.599	77.167	78.573	0					74	33	3	0	0	0	0.52765	2	9576	9576;9588		85.161	23.053	1	1997200			62092	2266	43712	43774	67234;67235	67234					-0.016864013359963792
QGPSREPHPT	10	Unmodified	_QGPSREPHPT_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.2711791992188	2	553.272887	1104.53122	0.11892	6.5796E-05	-0.85347	-0.0004722	-0.73455	-0.00040641	553.2724986153345	77.736	1.5344	77.525	77.08	78.614	-0.21087					72	36	3	0	0	0	0.56936	2	9565	9565;9577		80.455	20.336	1	1530800			62093	2266	43712	43774	67236;67237	67236					-0.016864013359963792
QGPSREPHPT	10	Unmodified	_QGPSREPHPT_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.271728515625	2	553.272887	1104.53122	-0.38353	-0.0002122	-0.20094	-0.00011118	-0.58448	-0.00032337	553.2728237956024	77.599	1.3305	77.613	77.231	78.562	0.013496					50	31	2	0	0	0	0.47897	1	9506	9506		90.601	33.88	1	1570600			62094	2266	43712	43774	67238	67238					-0.016864013359963792
QGPVKVVIT	9	Unmodified	_QGPVKVVIT_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-3|BANP	REV__nc|ENSG00000172530|Q8N9N5-3|BANP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7721252441406	2	470.794935	939.575317	0.50188	0.00023628	-1.0966	-0.00051628	-0.59473	-0.00027999	470.7941192777508	46.774	0.30623	46.774	46.623	46.93	0					12	7	2	0	0	0	0.024495	1	4636	4636		26.693	18.462	1	136170	+		62095	26681	43713	43775	67239	67239					0.10311234828270699
QGQHEESW	8	Unmodified	_QGQHEESW_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;KMT2B|p.R1109Pfs*4|1|0.47|ENSG00000272333|chr19:35723992-35723993|-/C|frameshift_variant;KMT2B|p.N1156Mfs*26|1|0.17|ENSG00000272333|chr19:35725018-35725018|T/-|frameshift_variant;KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant;KMT2B|p.A1404Gfs*274|1|0.1|ENSG00000272333|chr19:35727527-35727528|-/A|frameshift_variant;KMT2B|p.K553Nfs*52|1|0.25|ENSG00000272333|chr19:35720997-35720997|C/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.29547119140625	2	500.709588	999.404623	-0.64099	-0.00032095	1.9067	0.00095471	1.2657	0.00063376	500.7102855208645	25.926	1.3246	25.903	25.286	26.611	-0.023088					65	31	3	0	0	0	0.027866	1	1304	1304		19.36	4.6959	1	159470			62096	11013	43714	43776	67240	67240					-0.09510327561145004
QGQKFKSEL	9	Unmodified	_QGQKFKSEL_					0	0	0			REV__ENSG00000176971|ENST00000318627|FIBIN	REV__ENSG00000176971|ENST00000318627|FIBIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7905883789062	2	532.790381	1063.56621	0.75748	0.00040358	-1.7739	-0.00094512	-1.0164	-0.00054154	532.7894674936734	64.006	1.2417	64.006	63.631	64.873	0					130	33	6	0	0	0	0.75397	1	7586	7586		42.396	1.618	1	62700000	+		62097	27068	43715	43777	67241	67241					0.036968414719467546
QGQLACGGAL	10	Unmodified	_QGQLACGGAL_					0	0	0		ENST00000486499.1_1_16:31096429-31097399:-|nuORF;ENST00000533518.5_3_16:31095113-31102425:-|nuORF;ENSG00000151006|ENST00000280606|PRSS53	ENST00000486499.1_1_16:31096429-31097399:-|nuORF	ENST00000486499.1_1_16:31096429-31097399:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2299499511719	2	459.229102	916.443651	-0.85767	-0.00039387	1.351	0.00062042	0.49334	0.00022655	459.2296087530466	28.969	0.72477	28.969	28.571	29.296	0					44	17	4	0	0	0	1.0665	1	1749	1749		37.159	0	1	1783700			62098	6167	43716	43778	67242	67242					-0.017913185311158486
QGQPTMVLN	9	Unmodified	_QGQPTMVLN_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9|MGA	REV__nc|ENSG00000174197|Q8IWI9|MGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7975769042969	2	494.250034	986.485516	0.20915	0.00010337	-4.1931	-0.0020724	-3.9839	-0.001969	494.24789000377916	50.85	0.56904	50.85	50.609	51.178	0					25	15	2	0	0	0	0.024209	1	5389	5389		47.657	1.6851	1	358440	+		62099	26841	43717	43779	67243	67243					-0.008267628425869589
QGQQRQQNL	9	Unmodified	_QGQQRQQNL_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.8079223632812	2	550.283786	1098.55302	-0.94617	-0.00052066	-2.9444	-0.0016203	-3.8906	-0.0021409	550.280594078403	60.605	1.163	60.605	60.366	61.529	0					46	30	3	0	0	0	0.024405	1	7001	7001		35.618	13.658	1	610750	+		62100	26325	43718	43780	67244	67244					0.00768403412553198
QGQQRQQNL	9	Unmodified	_QGQQRQQNL_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.283786	1098.55302	-1.0654	-0.00058625	0.62744	0.00034527	-0.43792	-0.00024098	550.2836696235894	60.898	0.56313	60.684	60.31	60.873	-0.21339	0.031361	-3.1738E-06	NaN	34.173	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550670	+		62101	26325	43718	43780							0.00768403412553198
QGQQRQQNL	9	Unmodified	_QGQQRQQNL_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.283786	1098.55302	-1.9906	-0.0010954	1.5924	0.00087625	-0.39827	-0.00021916	550.2842913272991	60.591	0.44174	60.669	60.356	60.797	0.078888	0.016736	0.0010588	NaN	34.173	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585910	+		62102	26325	43718	43780							0.00768403412553198
QGQRGVLPS	9	Unmodified	_QGQRGVLPS_					0	0	0		ENST00000525070.1_1_11:409841-409994:-|nuORF;ENST00000530683.5_1_11:407853-409994:-|nuORF;ENST00000528698.5_1_11:407426-409994:-|nuORF	ENST00000525070.1_1_11:409841-409994:-|nuORF	ENST00000525070.1_1_11:409841-409994:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.26153564453125	2	471.261791	940.509028	0.53665	0.0002529	-0.72221	-0.00034035	-0.18557	-8.7451E-05	471.26147683140755	26.107	1.2944	26.188	25.665	26.96	0.081291					90	30	4	0	0	0	0.72875	1	1246	1246		44.117	0.49075	1	4550900			62103	16080	43719	43781	67245	67245					0.03639418986244891
QGQRLDNV	8	Unmodified	_QGQRLDNV_					0	0	0		ENST00000475752.1_1_15:32976717-32988807:+|nuORF;ENST00000498069.5_1_15:32969893-32988807:+|nuORF;nc|ENSG00000166922|P05408-2|SCG5;ENSG00000166922|ENST00000300175|SCG5	ENST00000475752.1_1_15:32976717-32988807:+|nuORF	ENST00000475752.1_1_15:32976717-32988807:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2801513671875	2	465.243598	928.472643	1.8793	0.00087434	4.3292	0.0020141	6.2085	0.0028885	465.24565600148946	24.273	0.9223	24.092	23.539	24.461	-0.18089					29	20	2	0	0	0	0.027866	1	1054	1054		42.396	0	1	69535			62104	7628	43720	43782	67246	67246					0.0055454208951459805
QGQRQCFSL	9	Unmodified	_QGQRQCFSL_					0	0	0			REV__ENST00000546227.5_3_12:122237782-122237935:-|nuORF	REV__ENST00000546227.5_3_12:122237782-122237935:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8056030273438	2	533.758558	1065.50256	-1.2358	-0.00065964	0.46442	0.00024789	-0.77142	-0.00041175	533.757760839435	45.024	0.38153	44.875	44.662	45.044	-0.1488					13	10	2	0	0	0	0.024263	1	4306	4306		42.396	14.514	1	76247	+		62105	34837	43721	43783	67247	67247					-0.027568422367949097
QGRAARLP	8	Unmodified	_QGRAARLP_					0	0	0		ENST00000525402.5_1_11:67275470-67275692:-|nuORF;ENST00000301488.7_1_11:67275099-67275692:-|nuORF	ENST00000525402.5_1_11:67275470-67275692:-|nuORF	ENST00000525402.5_1_11:67275470-67275692:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.75921630859375	2	434.759218	867.503883	-0.22276	-9.6848E-05	0.39845	0.00017323	0.17568	7.638E-05	434.7592793989391	21.612	1.8667	21.522	20.72	22.587	-0.090094					83	38	4	0	0	0	0.91239	1	687	687		50.025	2.1089	1	1189900			62106	11931	43722	43784	67248	67248					0.0648315991426216
QGRIQLNSF	9	Unmodified	_QGRIQLNSF_					0	0	0			REV__nc|ENSG00000131095|P14136-2|GFAP	REV__nc|ENSG00000131095|P14136-2|GFAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7832641601562	2	531.788173	1061.56179	-0.8659	-0.00046047	-3.0458	-0.0016197	-3.9117	-0.0020802	531.7864984001368	56.793	0.097031	56.793	56.712	56.809	0					4	2	2	0	0	0	0.024405	1	6349	6349		35.618	0	1	415570	+		62107	36655	43723	43785	67249	67249					0.03347377049021816
QGRISEGKP	9	Unmodified	_QGRISEGKP_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7427062988281	2	486.267073	970.519593	-0.29213	-0.00014205	-3.6653	-0.0017823	-3.9574	-0.0019244	486.26542059387197	42.832	1.021	42.858	42.056	43.077	0.026016					37	28	2	0	0	0	0.024021	1	3776	3776		58.782	0	1	640840	+		62108	36998	43724	43786	67250	67250					0.03315401640657001
QGRKLPPA	8	Unmodified	_QGRKLPPA_					0	0	0			REV__ENST00000366903.7_1_1:221052858-221052999:+|nuORF	REV__ENST00000366903.7_1_1:221052858-221052999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.8852233886719	2	433.763969	865.513385	-0.05858	-2.541E-05	-3.4198	-0.0014834	-3.4783	-0.0015088	433.76338828512485	20.004	0.24689	20.004	19.831	20.078	0					6	4	2	0	0	0	0.027866	1	488	488		26.796	13.021	1	7477	+		62109	30992	43725	43787	67251	67251					0.07524928199779879
QGRKLPPA	8	Unmodified	_QGRKLPPA_					0	0	0			REV__ENST00000366903.7_1_1:221052858-221052999:+|nuORF	REV__ENST00000366903.7_1_1:221052858-221052999:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	433.763969	865.513385	1.2429	0.00053912	-1.9158	-0.00083102	-0.67296	-0.0002919	433.7630052360927	20.12	0.28338	19.92	19.801	20.084	-0.2001	-0.1008	-0.0010422	NaN	26.796	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13135	+		62110	30992	43725	43787							0.07524928199779879
QGRRALKP	8	Unmodified	_QGRRALKP_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.279052734375	2	463.288143	924.561733	0.9092	0.00042122	1.9112	0.00088546	2.8204	0.0013067	463.2888042202284	51.349	0.56662	51.238	51.051	51.617	-0.11163					23	14	2	0	0	0	0.027866	1	5308	5308		26.796	8.4717	1	252740			62111	9003	43726	43788	67252	67252					0.0964342183970075
QGRRGANSN	9	Unmodified	_QGRRGANSN_					0	0	0			REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF	REV__ENST00000461741.1_1_7:48075147-48081223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.28387451171875	2	480.241921	958.469289	-0.58814	-0.00028245	-1.964	-0.00094318	-2.5521	-0.0012256	480.24151538262333	75.546	0.20836	75.546	75.378	75.586	0					7	5	2	0	0	0	0.024495	1	9280	9280		34.173	2.2177	1	225130	+		62112	32884	43727	43789	67253	67253					-0.011607079644818441
QGSFRPLP	8	Unmodified	_QGSFRPLP_					0	0	0		HERVH-int_dup4905|chr13:109269433-109270085:+|2.113040298311012|0.0594876981775034|5.15|470.0|15|3|sense	HERVH-int_dup4905|chr13:109269433-109270085:+|2.113040298311012|0.0594876981775034|5.15|470.0|15|3|sense	HERVH-int_dup4905|chr13:109269433-109270085:+|2.113040298311012|0.0594876981775034|5.15|470.0|15|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2470703125	2	451.248152	900.481751	-0.55321	-0.00024964	1.1481	0.00051806	0.59484	0.00026842	451.2484701197082	39.937	0.88028	39.824	39.467	40.347	-0.11223					45	23	3	0	0	0	0.6248	1	3467	3467		73.975	10.668	1	1254400			62113	17722	43728	43790	67254	67254					0.027529354458465605
QGTLSVVV	8	Unmodified	_QGTLSVVV_					0	0	0			REV__ENST00000473633.1_1_7:150838782-150841027:+|nuORF	REV__ENST00000473633.1_1_7:150838782-150841027:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8948059082031	2	401.737086	801.459619	2.5832	0.0010378	0.31788	0.0001277	2.9011	0.0011655	401.73685674857313	26.049	0.7482	26.13	25.665	26.414	0.081293					26	17	2	0	0	0	0.027866	1	1274	1274		12.959	0	1	107830	+		62114	23380	43729	43791	67255	67255					0.050947109774256205
QGTLSVVV	8	Unmodified	_QGTLSVVV_					0	0	0			REV__ENST00000473633.1_1_7:150838782-150841027:+|nuORF	REV__ENST00000473633.1_1_7:150838782-150841027:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	401.737086	801.459619	0.1031	4.1418E-05	2.9494	0.0011849	3.0525	0.0012263	401.73801777498846	26.247	0.62539	26.224	25.82	26.446	-0.023088	0.039934	0.00087798	NaN	12.959	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112460	+		62115	23380	43729	43791							0.050947109774256205
QGTPRSNG	8	Unmodified	_QGTPRSNG_					0	0	0			REV__ENSG00000170498|ENST00000367194|KISS1	REV__ENSG00000170498|ENST00000367194|KISS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	408.5063781738281	2	408.701566	815.388579	0.75998	0.0003106	-4.0382	-0.0016504	-3.2783	-0.0013398	408.6998246688767	19.034	0.69259	18.873	18.688	19.381	-0.16079					18	13	2	0	0	0	0.027866	1	427	427		13.454	0	1	37282	+		62116	26478	43730	43792	67256	67256					-0.026499890073750976
QGTQRRKRRP	10	Unmodified	_QGTQRRKRRP_					0	0	0			REV__ENSG00000196569|ENST00000421865|LAMA2	REV__ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8829345703125	2	641.881793	1281.74903	-2.5036	-0.001607	3.3567	0.0021546	0.85312	0.0005476	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	0.96822	1	11668	11668		49.536	9.4779	1	1400600	+		62117	28198	43731	43793	67257	67257					0.11942833377111128
QGVLLLEPSE	10	Unmodified	_QGVLLLEPSE_					0	0	0			REV__HERC1|p.R3554Q|1|0.23|ENSG00000103657|chr15:63649811-63649811|C/T|missense_variant	REV__HERC1|p.R3554Q|1|0.23|ENSG00000103657|chr15:63649811-63649811|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.7985229492188	2	542.797872	1083.58119	-0.12326	-6.6904E-05	1.8623	0.0010108	1.739	0.00094393	542.798651310599	31.957	1.0246	31.769	31.437	32.462	-0.18768					53	23	4	0	0	0	1.0616	1	2173	2173		37.812	2.1932	1	1188700	+		62118	36095	43732	43794	67258	67258					0.042742885492771165
QGVREGLIV	9	Unmodified	_QGVREGLIV_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;nc|ENSG00000149823|Q9UID3-2|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.78765869140625	2	485.787641	969.56073	-0.82555	-0.00040104	0.041703	2.0259E-05	-0.78385	-0.00038078	485.78768262236537	44.805	1.0306	44.805	44.247	45.278	0					88	29	4	0	0	0	0.37611	1	4289	4289		67.494	2.0283	1	16599000			62119	6122	43733	43795	67259	67259					0.07473162680139467
QGVREGLIV	9	Unmodified	_QGVREGLIV_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;nc|ENSG00000149823|Q9UID3-2|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.78814697265625	2	485.787641	969.56073	-0.63293	-0.00030747	-0.19075	-9.2665E-05	-0.82368	-0.00040013	485.7875273592426	44.827	1.1312	44.864	44.306	45.437	0.0369					97	32	4	0	0	0	0.2101	1	4229	4229		87.696	12.653	1	15896000			62120	6122	43733	43795	67260	67260					0.07473162680139467
QGVVHKLINP	10	Unmodified	_QGVVHKLINP_					0	0	0			REV__nc|ENSG00000077327|O75602-2|SPAG6	REV__nc|ENSG00000077327|O75602-2|SPAG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.759521484375	2	552.82984	1103.64513	-0.78379	-0.0004333	-1.0261	-0.00056724	-1.8098	-0.0010005	552.8287269277473	52.319	0.65081	52.201	51.869	52.52	-0.11875					34	16	3	0	0	0	0.03519	1	5404	5404		25.574	9.9322	1	727210	+		62121	20588	43734	43796	67261	67261					0.09745113496910562
QGVVIEKG	8	Unmodified	_QGVVIEKG_					0	0	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.20709228515625	2	415.242535	828.470518	1.8198	0.00075565	-1.3521	-0.00056146	0.46765	0.00019419	415.24199045846353	36.714	0.56413	36.505	36.161	36.726	-0.2092					17	13	2	0	0	0	0.027866	1	2875	2875		42.396	0	1	104060			62122	1516	43735	43797	67262	67262					0.04942113351705757
QGWIHGVPD	9	Unmodified	_QGWIHGVPD_					0	0	0			REV__ENST00000534489.1_1_1:161600095-161600167:-|nuORF	REV__ENST00000534489.1_1_1:161600095-161600167:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2852478027344	2	504.748516	1007.48248	0.13947	7.0397E-05	1.804	0.00091057	1.9435	0.00098097	505.2506208060889	37.199	0.55853	37.136	36.709	37.268	-0.063385					15	14	2	0	0	0	0.024541	1	3011	3011		16.473	10.16	1	95854	+		62123	34640	43736	43798	67263	67263					-0.020962699050983247
QGWRGPGEP	9	Unmodified	_QGWRGPGEP_					0	0	0			REV__ENST00000370096.7_1_1:103573914-103574004:-|nuORF	REV__ENST00000370096.7_1_1:103573914-103574004:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7759094238281	2	492.238316	982.462078	-1.1012	-0.00054206	1.9763	0.0009728	0.87506	0.00043074	492.2376729294594	51.61	0.46404	51.697	51.61	52.074	0.087006					15	12	3	0	0	0	0.024447	1	5402	5402		32.812	13.709	1	165020	+		62124	31110	43737	43799	67264	67264					-0.02985440564907549
QGWRGPGEP	9	Unmodified	_QGWRGPGEP_					0	0	0			REV__ENST00000370096.7_1_1:103573914-103574004:-|nuORF	REV__ENST00000370096.7_1_1:103573914-103574004:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.238316	982.462078	0.24675	0.00012146	0.82423	0.00040572	1.071	0.00052718	492.23727830719537	51.737	0.30846	51.737	51.633	51.942	0	0.020187	-0.00057092	NaN	24.519	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118250	+		62125	31110	43737	43799							-0.02985440564907549
QGYISSNYVAE	11	Unmodified	_QGYISSNYVAE_					0	0	0		FRK|p.P101S|1|0.68|ENSG00000111816|chr6:116060011-116060011|G/A|missense_variant	FRK|p.P101S|1|0.68|ENSG00000111816|chr6:116060011-116060011|G/A|missense_variant	FRK|p.P101S|1|0.68|ENSG00000111816|chr6:116060011-116060011|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.8793029785156	3	410.85942	1229.55643	0.056183	2.3083E-05	-1.9301	-0.00079299	-1.8739	-0.0007699	410.85991439106556	31.613	0.35944	31.428	31.245	31.604	-0.18503					12	8	2	0	0	0	0.024747	1	2127	2127		15.921	0	1	29135			62126	17659	43738	43800	67265	67265					-0.04916391324081815
QGYKKEYIP	9	Unmodified	_QGYKKEYIP_					0	0	0			REV__ENSG00000164326|ENST00000296777|CARTPT	REV__ENSG00000164326|ENST00000296777|CARTPT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.2836303710938	2	563.300581	1124.58661	0.48926	0.0002756	-0.86186	-0.00048549	-0.37261	-0.00020989	563.3000428575871	83.069	1.2421	82.979	82.701	83.943	-0.090454					79	28	4	0	0	0	0.02435	1	10476	10476		34.173	0	1	1220000	+		62127	25738	43739	43801	67266	67266					0.029300121317419325
QGYLRSVF	8	Unmodified	_QGYLRSVF_					0	0	0		ENST00000431036.1_1_22:45298215-45298323:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.26171875	2	485.261259	968.507966	-0.12319	-5.9781E-05	0.10564	5.1264E-05	-0.017552	-8.5172E-06	485.2611898225824	56.744	1.0486	56.577	56.204	57.253	-0.1672					56	27	3	0	0	0	0.53593	3	6161	6140;6149;6161		82.241	21.269	1	4655000			62128	1888	43740	43802	67267;67268;67269	67269					0.0224520461732709
QGYLRSVF	8	Unmodified	_QGYLRSVF_					0	0	0		ENST00000431036.1_1_22:45298215-45298323:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	ENST00000431036.1_1_22:45298215-45298323:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2618408203125	2	485.261259	968.507966	0.25785	0.00012513	-0.24171	-0.00011729	0.016141	7.8326E-06	485.2610058782707	56.813	0.8862	56.611	56.25	57.136	-0.20209					52	23	3	0	0	0	0.64735	1	6172	6172		71.877	10.906	1	4812500			62129	1888	43740	43802	67270	67270					0.0224520461732709
QHAHVIEDL	9	Unmodified	_QHAHVIEDL_					0	0	0		ENSG00000159714|ENST00000565726|ZDHHC1;nc|ENSG00000159714|Q8WTX9|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2936401367188	2	531.272355	1060.53016	-0.23762	-0.00012624	4.3427	0.0023071	4.105	0.0021809	531.2746431830757	30.02	0.55576	29.87	29.584	30.14	-0.14952					29	12	4	0	0	0	0.024374	1	1869	1869		49.442	3.4896	1	313250			62130	6764	43741	43803	67271	67271					0.002313842950798062
QHALRGGGGG	10	Unmodified	_QHALRGGGGG_					0	0	0		ENST00000395474.7_2_3:49052727-49052976:+|nuORF	ENST00000395474.7_2_3:49052727-49052976:+|nuORF	ENST00000395474.7_2_3:49052727-49052976:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.23980712890625	2	455.236107	908.457661	0.48569	0.0002211	1.7795	0.00081011	2.2652	0.0010312	455.23681456841655	102.94	0.65137	102.81	102.49	103.14	-0.12724					36	15	3	0	0	0	1.0781	1	12773	12773		35.618	0	1	1184800			62131	13520	43742	43804	67272	67272					-0.00022904987804395205
QHALTLSLL	9	Unmodified	_QHALTLSLL_					0	0	0			REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2983703613281	2	498.297842	994.581131	-0.31179	-0.00015536	0.15293	7.6204E-05	-0.15886	-7.916E-05	498.2977287074927	61.844	0.97241	61.844	61.144	62.117	0					83	25	6	0	0	0	0.15029	1	7166	7166		99.375	19.924	1	3636200	+		62132	35241	43743	43805	67273	67273					0.0836233333996006
QHCTSNPSLAD	11	Unmodified	_QHCTSNPSLAD_					0	0	0			REV__NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant	REV__NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.2412719726562	2	586.753669	1171.49279	-1.6112	-0.00094541	-2.9279	-0.001718	-4.5392	-0.0026634	587.2531941522752	61.773	0.27472	61.596	61.453	61.728	-0.17781					9	6	2	0	0	0	0.024765	1	6912	6912		49.536	17.581	1	90269	+		62133	37297	43744	43806	67274	67274					-0.08610075032834175
QHDLMVDKRYF	11	Unmodified	_QHDLMVDKRYF_					0	0	0			REV__nc|ENSG00000141956|P57071|PRDM15	REV__nc|ENSG00000141956|P57071|PRDM15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3131103515625	3	484.57485	1450.70272	-0.20293	-9.8333E-05	-2.6087	-0.0012641	-2.8117	-0.0013625	484.57342907038884	40.232	0.69462	40.12	39.792	40.487	-0.11223					45	18	3	0	0	0	0.024735	1	3523	3523		27.644	15.712	1	1127500	+		62134	36727	43745	43807	67275	67275					-0.004604123598483056
QHELFDAWKF	10	Unmodified	_QHELFDAWKF_					0	0	0			REV__nc|ENSG00000256463|Q9BXA9-2|SALL3	REV__nc|ENSG00000256463|Q9BXA9-2|SALL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	3	440.8839	1319.62987	-0.3651	-0.00016097	0.98253	0.00043318	0.61743	0.00027222	440.8850991499203	31.607	0.56668	31.607	31.343	31.91	0					17	13	2	0	0	0	0.03519	1	2115	2115		32.751	5.1066	1	31507	+		62135	29080	43746	43808	67276	67276					-0.017157980909814796
QHFEEWHSRW	10	Unmodified	_QHFEEWHSRW_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.21710205078125	3	481.218054	1440.63233	0.74309	0.00035759	-2.6995	-0.001299	-1.9564	-0.00094146	481.21677905595794	37.092	1.8103	36.882	36.282	38.092	-0.2092					107	47	4	0	0	0	0.83648	1	2953	2953		58.246	19.532	1	1874100			62136	4249	43747	43809	67277	67277					-0.07035949633313976
QHFTNPAP	8	Unmodified	_QHFTNPAP_					0	0	0		nc|ENSG00000099869|Q6U949|IGF2-AS	nc|ENSG00000099869|Q6U949|IGF2-AS	nc|ENSG00000099869|Q6U949|IGF2-AS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7664489746094	2	456.222134	910.429715	-0.46149	-0.00021054	-0.28055	-0.00012799	-0.74204	-0.00033854	456.2228036360636	43.724	0.32417	43.724	43.548	43.872	0					15	8	3	0	0	0	0.027866	1	4136	4136		47.916	19.661	1	91183			62137	18122	43748	43810	67278	67278					-0.029082279679187195
QHFYAALL	8	Unmodified	_QHFYAALL_					0	0	0		ENSG00000165282|ENST00000378617|PIGO;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENST00000465745.6_1_9:35089888-35090486:-|nuORF;ENST00000474436.1_1_9:35089888-35090311:-|nuORF	ENSG00000165282|ENST00000378617|PIGO	ENSG00000165282|ENST00000378617|PIGO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.7587585449219	2	481.758352	961.502152	-0.31331	-0.00015094	1.2647	0.00060929	0.95142	0.00045835	481.7588033848385	21.846	0.98794	21.846	21.537	22.525	0					44	20	3	0	0	0	0.95417	1	715	715		44.531	7.5026	1	718080			62138	7392	43749	43811	67279	67279					0.01986106105653107
QHGPGHPGVGP	11	Unmodified	_QHGPGHPGVGP_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.25	2	520.25704	1038.49953	0.42364	0.0002204	1.7039	0.00088647	2.1275	0.0011069	520.2579727052439	72.342	1.533	72.077	71.319	72.852	-0.26479					53	36	2	0	0	0	0.024752	1	8429	8429		25.574	7.2496	1	164980	+		62139	24718	43750	43812	67280	67280					-0.018183492992648098
QHGPQVRL	8	Unmodified	_QHGPQVRL_					0	0	0		ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2450256347656	2	467.764501	933.514448	1.1358	0.00053129	-3.6491	-0.0017069	-2.5133	-0.0011756	467.76271173834846	33.056	0.62299	33.113	32.838	33.461	0.056572					26	16	2	0	0	0	0.027866	1	2258	2258		33.516	0	1	401230			62140	4992	43751	43813	67281	67281					0.045031425686943294
QHGSRGFLPK	10	Unmodified	_QHGSRGFLPK_					0	0	0			REV__ENST00000449169.1_1_1:110835106-110881762:-|nuORF	REV__ENST00000449169.1_1_1:110835106-110881762:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.76416015625	2	563.809439	1125.60433	0.48514	0.00027352	2.4083	0.0013578	2.8935	0.0016314	563.8107196009485	76.971	0.33577	76.72	76.528	76.863	-0.25162					13	7	2	0	0	0	0.03519	1	9163	9163		24.519	0	1	371400	+		62141	32671	43752	43814	67282	67282					0.046547721772640216
QHHKSNVS	8	Unmodified	_QHHKSNVS_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7903137207031	2	468.73594	935.457327	-0.14222	-6.6662E-05	1.4241	0.00066751	1.2818	0.00060084	468.73638440471007	27.077	0.63142	27.064	26.869	27.5	-0.012981					28	16	3	0	0	0	0.027866	1	1484	1484		18.324	4.5491	1	162860			62142	7231	43753	43815	67283	67283					-0.012983247076704174
QHHNRKKSI	9	Unmodified	_QHHNRKKSI_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6;REV__nc|ENSG00000091262|O95255-3|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.2921752929688	2	574.325788	1146.63702	0.5572	0.00032001	1.0904	0.00062623	1.6476	0.00094624	574.3272908204569	82.439	0.65224	82.219	81.957	82.609	-0.22015					30	14	3	0	0	0	0.024447	1	9908	9908		32.812	9.2897	1	142060	+		62143	20906;36506	43754	43816	67284	67284					0.06956979300116473
QHIFFKKRK	9	Unmodified	_QHIFFKKRK_					0	0	0			REV__nc|ENSG00000070159|P26045-3|PTPN3	REV__nc|ENSG00000070159|P26045-3|PTPN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.1874694824219	3	411.252258	1230.73495	-0.37684	-0.00015498	0.59355	0.0002441	0.21671	8.9122E-05	411.2524247900722	35.113	0.96111	34.926	34.56	35.521	-0.18675					66	24	3	0	0	0	0.024541	1	2717	2717		17.468	1.5474	1	1174000	+		62144	20418	43755	43817	67285	67285					0.1288078789609699
QHIFFKKRK	9	Unmodified	_QHIFFKKRK_					0	0	0			REV__nc|ENSG00000070159|P26045-3|PTPN3	REV__nc|ENSG00000070159|P26045-3|PTPN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	411.252258	1230.73495	-0.033554	-1.3799E-05	0.25286	0.00010399	0.21931	9.019E-05	411.25228151311944	35.188	1.0115	34.972	34.63	35.641	-0.21556	0.0163	-0.0002473	NaN	23.523	76	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1115400	+		62145	20418	43755	43817							0.1288078789609699
QHILQGAF	8	Unmodified	_QHILQGAF_					0	0	0		ENSG00000153933|ENST00000284061|DGKE;nc|ENSG00000153933|P52429-2|DGKE;ENST00000576869.5_1_17:54912147-54924989:+|nuORF	ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.25054931640625	2	457.248152	912.481751	-0.22733	-0.00010395	3.9571	0.0018094	3.7298	0.0017055	457.24980324559215	16.483	0.20539	16.275	16.162	16.367	-0.20777					15	7	3	0	0	0	1.0239	1	70	70		33.516	10.473	1	37174			62146	6368	43756	43818	67286	67286					0.02200935445853247
QHILQGAF	8	Unmodified	_QHILQGAF_					0	0	0		ENSG00000153933|ENST00000284061|DGKE;nc|ENSG00000153933|P52429-2|DGKE;ENST00000576869.5_1_17:54912147-54924989:+|nuORF	ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	457.248152	912.481751	1.6542	0.00075636	1.9618	0.00089704	3.616	0.0016534	457.2490357431586	16.498	0.18708	16.344	16.222	16.409	-0.15376	0.034426	-0.00073242	NaN	33.516	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36689			62147	6368	43756	43818							0.02200935445853247
QHITDLIPS	9	Unmodified	_QHITDLIPS_					0	0	0		nc|ENSG00000115687|Q96RG2-4|PASK;PASK|p.E1199Dfs*8|1|0.04|ENSG00000115687|chr2:241108237-241108238|-/CATA|frameshift_variant;ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK	nc|ENSG00000115687|Q96RG2-4|PASK	nc|ENSG00000115687|Q96RG2-4|PASK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2794189453125	2	512.277106	1022.53966	-0.11535	-5.909E-05	4.2737	0.0021893	4.1583	0.0021302	512.2792433016496	19.195	0.78704	19.076	18.804	19.591	-0.11872					46	15	4	0	0	0	0.77768	1	392	392		40.778	1.972	1	1521200			62148	3482	43757	43819	67287	67287					0.029291525806115715
QHKALVNTT	9	Unmodified	_QHKALVNTT_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.71405029296875	2	506.282723	1010.55089	-0.49717	-0.00025171	-1.6904	-0.00085584	-2.1876	-0.0011075	506.2814566725663	31.226	0.60809	31.073	30.887	31.495	-0.15231					25	15	2	0	0	0	0.024477	1	2101	2101		27.882	0	1	114540			62149	5233	43758	43820	67288	67288					0.04603974674739675
QHKGVVRF	8	Unmodified	_QHKGVVRF_					0	0	0			REV__ENST00000502660.5_1_5:149456698-149465990:-|nuORF	REV__ENST00000502660.5_1_5:149456698-149465990:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.77239990234375	2	485.782693	969.550834	0.33071	0.00016065	-0.1373	-6.6696E-05	0.19341	9.3955E-05	485.7825220940059	18.689	0.396	18.485	18.312	18.708	-0.20371					13	7	2	0	0	0	0.027866	1	311	311		19.36	0	1	25097	+		62150	33938	43759	43821	67289	67289					0.06484019465415258
QHLGHWKISQ	10	Unmodified	_QHLGHWKISQ_					0	0	0		ENST00000592599.5_1_19:5611927-5611981:-|nuORF	ENST00000592599.5_1_19:5611927-5611981:-|nuORF	ENST00000592599.5_1_19:5611927-5611981:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.1874694824219	3	411.887756	1232.64144	-0.28175	-0.00011605	0.71863	0.000296	0.43688	0.00017995	412.2226448225074	35.561	0.68591	35.374	34.835	35.521	-0.18675					28	17	3	0	0	0	0.03519	1	2717	2717		24.232	3.3947	1	181310			62151	17376	43760	43822	67290	67290					0.03442443723042743
QHLGHWKISQ	10	Unmodified	_QHLGHWKISQ_					0	0	0		ENST00000592599.5_1_19:5611927-5611981:-|nuORF	ENST00000592599.5_1_19:5611927-5611981:-|nuORF	ENST00000592599.5_1_19:5611927-5611981:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	411.887756	1232.64144	0.23451	9.6592E-05	5.3669	0.0022106	5.6015	0.0023072	411.8903364122206	35.201	0.17724	35.201	35.093	35.27	0	-0.086756	0.0034861	NaN	28.577	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29962			62152	17376	43760	43822							0.03442443723042743
QHLHKSGR	8	Unmodified	_QHLHKSGR_					0	0	0		ENST00000502125.6_1_15:96833885-96870438:-|nuORF;ENST00000557863.5_1_15:96833885-96870306:-|nuORF	ENST00000502125.6_1_15:96833885-96870438:-|nuORF	ENST00000502125.6_1_15:96833885-96870438:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2611389160156	2	481.767575	961.520596	0.75582	0.00036413	2.2093	0.0010644	2.9652	0.0014285	481.76839929319686	87.562	0.61025	87.583	87.262	87.873	0.021072					29	14	3	0	0	0	0.027866	1	10909	10909		44.117	19.914	1	646860			62153	15660	43761	43823	67291	67291					0.03829660800226975
QHLHVWSDP	9	Unmodified	_QHLHVWSDP_					0	0	0			REV__ENST00000538035.5_3_6:24850137-24850882:-|nuORF	REV__ENST00000538035.5_3_6:24850137-24850882:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.3165283203125	2	559.772522	1117.53049	-0.59707	-0.00033422	0.27514	0.00015401	-0.32193	-0.00018021	559.7725468729569	46.87	0.79118	46.676	46.481	47.272	-0.19387					44	21	3	0	0	0	0.024541	1	4637	4637		23.042	0	1	836040	+		62154	34710	43762	43824	67292	67292					-0.023571959850642088
QHLHVWSDP	9	Unmodified	_QHLHVWSDP_					0	0	0			REV__ENST00000538035.5_3_6:24850137-24850882:-|nuORF	REV__ENST00000538035.5_3_6:24850137-24850882:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.772522	1117.53049	-0.066829	-3.7409E-05	0.097744	5.4714E-05	0.030915	1.7305E-05	559.7722449059937	46.723	0.35194	46.626	46.473	46.825	-0.096649	-0.076966	-4.5443E-06	NaN	30.504	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345240	+		62155	34710	43762	43824							-0.023571959850642088
QHLHVWSDP	9	Unmodified	_QHLHVWSDP_					0	0	0			REV__ENST00000538035.5_3_6:24850137-24850882:-|nuORF	REV__ENST00000538035.5_3_6:24850137-24850882:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.772522	1117.53049	0.095961	5.3716E-05	-0.34044	-0.00019057	-0.24448	-0.00013685	559.7720414082341	47.076	0.60645	46.807	46.595	47.201	-0.26939	0.10399	-0.00049511	NaN	30.504	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637130	+		62156	34710	43762	43824							-0.023571959850642088
QHLIHALCL	9	Unmodified	_QHLIHALCL_					0	0	0		ENST00000479412.2_1_1:120548017-120612131:-|nuORF;ENST00000489731.1_1_1:120548017-120572574:-|nuORF	ENST00000479412.2_1_1:120548017-120612131:-|nuORF	ENST00000479412.2_1_1:120548017-120612131:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2702026367188	2	524.292037	1046.56952	-0.38964	-0.00020428	-0.57469	-0.00030131	-0.96433	-0.00050559	524.291646322671	35.303	0.26534	35.087	34.95	35.216	-0.21555					10	6	3	0	0	0	0.024466	1	2656	2656		25.45	0	1	103820			62157	15169	43763	43825	67293	67293					0.04809813044948896
QHLLIMRDT	9	Unmodified	_QHLLIMRDT_					0	0	0			REV__LRP2|p.V1957L|1|0.19|ENSG00000081479|chr2:169213828-169213828|C/A|missense_variant	REV__LRP2|p.V1957L|1|0.19|ENSG00000081479|chr2:169213828-169213828|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.8034057617188	2	563.805508	1125.59646	-0.14728	-8.3039E-05	-1.6553	-0.00093329	-1.8026	-0.0010163	563.8027857274413	107.08	0.742	107.08	106.7	107.44	-0.003479					75	24	4	0	0	0	0.96906	1	13684	13684		26.693	0	1	189000	+		62158	36328	43764	43826	67294	67294					0.038688768654765227
QHLLLPQSGL	10	Unmodified	_QHLLLPQSGL_					0	0	0		ENST00000565302.5_1_16:733531-734319:-|nuORF	ENST00000565302.5_1_16:733531-734319:-|nuORF	ENST00000565302.5_1_16:733531-734319:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3220825195312	2	553.321848	1104.62914	0.057393	3.1757E-05	-1.0249	-0.00056711	-0.96753	-0.00053536	553.3210783375285	68.103	0.84832	68.103	67.792	68.641	0					39	15	3	0	0	0	0.86389	1	8173	8173		56.434	1.6575	1	2615100			62159	16914	43765	43827	67295	67295					0.08101407260005544
QHLLRGRPV	9	Unmodified	_QHLLRGRPV_					0	0	0			REV__ENST00000371694.7_1_9:139571467-139571918:-|nuORF	REV__ENST00000371694.7_1_9:139571467-139571918:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.328125	2	538.327799	1074.64105	-0.46158	-0.00024848	-0.83614	-0.00045012	-1.2977	-0.0006986	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.70186	2	12742	12742;12766		45.952	8.4985	1	22988000	+		62160	31173	43766	43828	67296;67297	67296					0.10671068793840277
QHLNNDRNP	9	Unmodified	_QHLNNDRNP_					0	0	0		nc|ENSG00000124233|P04279-2|SEMG1;ENSG00000124233|ENST00000372781|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	nc|ENSG00000124233|P04279-2|SEMG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7852783203125	2	554.268136	1106.52172	0.35589	0.00019726	4.2536	0.0023577	4.6095	0.0025549	554.2704478316454	43.219	0.54693	43.249	42.939	43.486	0.030827					22	14	2	0	0	0	0.024457	1	3990	3990		29.15	0	1	528560			62161	4033	43767	43829	67298	67298					-0.027281696215140983
QHLPRSRPV	9	Unmodified	_QHLPRSRPV_					0	0	0			REV__ENST00000461745.5_2_3:77089697-77089820:+|nuORF	REV__ENST00000461745.5_2_3:77089697-77089820:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3170166015625	2	545.317432	1088.62031	-0.23183	-0.00012642	-1.2024	-0.00065567	-1.4342	-0.00078209	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.97455	1	11112	11112		25.574	0	1	11601000	+		62162	32885	43768	43830	67299	67299					0.07954478414171717
QHLQKNVAE	9	Unmodified	_QHLQKNVAE_					0	0	0			REV__ENST00000560220.5_1_15:40676698-40685795:+|nuORF	REV__ENST00000560220.5_1_15:40676698-40685795:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2709350585938	2	533.78563	1065.55671	-0.37012	-0.00019756	-4.1521	-0.0022163	-4.5222	-0.0024139	533.7836117239417	59.893	0.22271	59.693	59.538	59.761	-0.20016					12	5	3	0	0	0	0.024511	1	6809	6809		25.574	6.2141	1	396630	+		62163	23022	43769	43831	67300	67300					0.026550731864062982
QHNYKGHKTK	10	Unmodified	_QHNYKGHKTK_					0	0	0			REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.26922607421875	3	414.223028	1239.64725	-0.069561	-2.8814E-05	1.2934	0.00053574	1.2238	0.00050692	414.2235487765724	28.17	0.37112	28.166	28.003	28.374	-0.0042019					15	8	3	0	0	0	0.03519	1	1627	1627		24.232	4.9691	1	93177	+		62164	29747	43770	43832	67301	67301					0.037015422346939886
QHPGDRQHQL	10	Unmodified	_QHPGDRQHQL_					0	0	0			REV__ENST00000229595.5_1_6:119228648-119228744:+|nuORF	REV__ENST00000229595.5_1_6:119228648-119228744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	607.8472900390625	2	608.30251	1214.59047	-0.77535	-0.00047165	0.4609	0.00028036	-0.31446	-0.00019129	608.302617527231	41.392	1.9125	41.392	40.657	42.569	0					116	54	4	0	0	0	0.03519	1	3866	3866		44.377	13.874	1	1310100	+		62165	29401	43771	43833	67302	67302					-0.008245053218161047
QHPGDRQHQL	10	Unmodified	_QHPGDRQHQL_					0	0	0			REV__ENST00000229595.5_1_6:119228648-119228744:+|nuORF	REV__ENST00000229595.5_1_6:119228648-119228744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	607.8482055664062	2	608.30251	1214.59047	-0.41146	-0.00025029	0.13048	7.937E-05	-0.28099	-0.00017092	608.3024119054799	41.611	1.7055	41.479	40.897	42.602	-0.13219					113	48	4	0	0	0	0.03519	1	3860	3860		36.447	6.129	1	1292200	+		62166	29401	43771	43833	67303	67303					-0.008245053218161047
QHPGDRQHQL	10	Unmodified	_QHPGDRQHQL_					0	0	0			REV__ENST00000229595.5_1_6:119228648-119228744:+|nuORF	REV__ENST00000229595.5_1_6:119228648-119228744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	607.848388671875	2	608.30251	1214.59047	-1.1034	-0.0006712	0.7658	0.00046584	-0.3376	-0.00020536	608.3028410601036	41.567	1.5303	41.59	41.147	42.677	0.023006					99	43	3	0	0	0	0.03519	1	3800	3800		44.377	13.874	1	1522400	+		62167	29401	43771	43833	67304	67304					-0.008245053218161047
QHQWQREREWR	11	Unmodified	_QHQWQREREWR_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.811279296875	3	546.938061	1637.79235	-1.24	-0.00067822	2.0118	0.0011004	0.77181	0.00042213	547.2730570081328	46.661	0.10511	46.508	46.445	46.55	-0.15301					4	2	2	0	0	0	0.024869	1	4604	4604		10.104	1.3046	1	48192	+		62168	36533	43772	43834	67305	67305					-0.001030216362551073
QHQYGTST	8	Unmodified	_QHQYGTST_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7508239746094	2	461.206681	920.398809	-0.28328	-0.00013065	0.14534	6.7032E-05	-0.13794	-6.3617E-05	461.20669504729045	34.599	0.47109	34.649	34.329	34.8	0.050255					17	11	2	0	0	0	0.027866	1	2498	2498		18.324	0	1	113710	+		62169	26099	43773	43835	67306	67306					-0.06457426072802264
QHSFIMLL	8	Unmodified	_QHSFIMLL_					0	0	0			REV__ENSG00000118007|ENST00000383202|STAG1;REV__NCK1-STAG1|1|fusion	REV__NCK1-STAG1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.7229309082031	2	494.767863	987.521173	0.057884	2.8639E-05	-3.9831	-0.0019707	-3.9252	-0.0019421	494.76570241070795	47.61	0.992	47.457	46.899	47.891	-0.15301					49	28	3	0	0	0	0.027866	1	4792	4792		31.955	0	1	1798200	+		62170	22382;37265	43774	43836	67307	67307					0.026913194050735
QHTAFLPPV	9	Unmodified	_QHTAFLPPV_					0	0	0		nc|ENSG00000152601|Q9NR56-2|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000152601|Q9NR56-3|MBNL1	nc|ENSG00000152601|Q9NR56-2|MBNL1	nc|ENSG00000152601|Q9NR56-2|MBNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2587890625	2	505.276909	1008.53927	-0.017085	-8.6326E-06	-3.2785	-0.0016565	-3.2956	-0.0016652	505.27503710603565	41.156	0.28406	41.179	41.04	41.324	0.023006					12	7	2	0	0	0	0.024487	1	3625	3625		31.955	2.8053	1	248240			62171	18388	43775	43837	67308	67308					0.035337776514325014
QHTLPALSRA	10	Unmodified	_QHTLPALSRA_					0	0	0		ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;nc|ENSG00000138835|P49796-9|RGS3;nc|ENSG00000138835|P49796-5|RGS3;nc|ENSG00000138835|P49796-4|RGS3	ENSG00000138835|ENST00000695401|RGS3	ENSG00000138835|ENST00000695401|RGS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7734985351562	2	547.309272	1092.60399	-1.0958	-0.00059975	0.16146	8.8368E-05	-0.93437	-0.00051139	547.309155578109	33.211	0.43665	33.046	32.8	33.236	-0.16565					12	10	2	0	0	0	0.03519	1	2340	2340		17.468	2.6031	1	95126			62172	5293	43776	43838	67309	67309					0.0613935245742141
QHTYLVIF	8	Unmodified	_QHTYLVIF_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.3052673339844	2	510.779285	1019.54402	2.3105	0.0011802	-3.0226	-0.0015439	-0.71209	-0.00036372	510.7777278639067	18.905	0.5443	18.665	18.427	18.971	-0.23991					15	10	2	0	0	0	0.027866	1	358	358		31.955	0	1	33373	+		62173	23878	43777	43839	67310	67310					0.0350266179417531
QHVILHMN	8	Unmodified	_QHVILHMN_					0	0	0			REV__nc|ENSG00000197951|Q9NQZ8|ZNF71	REV__nc|ENSG00000197951|Q9NQZ8|ZNF71	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.722900390625	2	496.260736	990.50692	-0.38009	-0.00018862	-1.312	-0.00065111	-1.6921	-0.00083974	496.2601293368516	46.86	1.5329	46.916	46.172	47.704	0.05555					59	43	2	0	0	0	0.027866	1	4705	4705		33.516	0	1	519700	+		62174	28366	43778	43840	67311	67311					0.011286669767741841
QHVYKAVF	8	Unmodified	_QHVYKAVF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7230529785156	2	496.271627	990.528701	-0.048637	-2.4137E-05	-3.2225	-0.0015992	-3.2711	-0.0016234	496.26994181083734	47.812	0.31519	47.812	47.56	47.875	0					14	9	2	0	0	0	0.027866	1	4786	4786		18.324	1.8513	1	377170			62175	6969	43779	43841	67312	67312					0.03305794996992972
QHWRNSALLR	10	Unmodified	_QHWRNSALLR_					0	0	0		nc|ENSG00000158764|Q8WWU7-2|ITLN2;ENSG00000158764|ENST00000368029|ITLN2	nc|ENSG00000158764|Q8WWU7-2|ITLN2	nc|ENSG00000158764|Q8WWU7-2|ITLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7296142578125	3	427.570539	1279.68979	-0.19559	-8.3627E-05	0.59627	0.00025495	0.40069	0.00017132	427.5709299884476	28.788	0.25919	28.619	28.51	28.769	-0.16897					6	5	2	0	0	0	0.03519	1	1726	1726		20.03	2.8637	1	25957			62176	6699	43780	43842	67313	67313					0.06112937362922821
QHYHNSNI	8	Unmodified	_QHYHNSNI_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.258544921875	2	506.733397	1011.45224	-0.063017	-3.1933E-05	0.76782	0.00038908	0.70481	0.00035715	506.73358965966906	40.886	0.53045	40.886	40.623	41.153	0					20	14	2	0	0	0	0.027866	1	3653	3653		27.882	11.409	1	105560	+		62177	23505	43781	43843	67314	67314					-0.0530262857029129
QHYIPLLL	8	Unmodified	_QHYIPLLL_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.80877685546875	2	498.797478	995.580402	-0.38156	-0.00019032	-3.6001	-0.0017957	-3.9817	-0.0019861	498.79551411880016	23.331	0.46615	23.151	22.929	23.395	-0.17989					18	10	3	0	0	0	0.027866	1	901	901		39.021	0	1	129380	+		62178	20569	43782	43844	67315	67315					0.08243538690908281
QHYKPLAR	8	Unmodified	_QHYKPLAR_					0	0	0		nc|ENSG00000188152|Q5VZR2-2|NUTM2G;nc|ENSG00000188199|A6NNL0-2|NUTM2B;nc|ENSG00000184923|Q8IVF1-2|NUTM2A;ENSG00000188152|ENST00000372322|NUTM2G;ENSG00000130950|ENST00000253262|NUTM2F;ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	nc|ENSG00000188152|Q5VZR2-2|NUTM2G	nc|ENSG00000188152|Q5VZR2-2|NUTM2G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7765197753906	2	506.787976	1011.5614	-0.44046	-0.00022322	4.4403	0.0022503	3.9999	0.0020271	506.7904419332068	51.373	0.26609	51.096	50.929	51.195	-0.27643					10	6	2	0	0	0	0.027866	1	5259	5259		18.324	0	1	70738			62179	4477	43783	43845	67316	67316					0.056080021198340546
QHYNLHSRSFY	11	Unmodified	_QHYNLHSRSFY_					0	0	0			REV__nc|ENSG00000165511|Q5T742|ZNF22-AS1	REV__nc|ENSG00000165511|Q5T742|ZNF22-AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2894287109375	3	484.565342	1450.6742	-0.22145	-0.00010731	-2.5877	-0.0012539	-2.8092	-0.0013612	484.8984411780682	34.767	0.39851	34.58	34.323	34.721	-0.18675					14	9	2	0	0	0	0.024779	1	2537	2537		27.644	12.95	1	126380	+		62180	36874	43784	43846	67317	67317					-0.03311393944795782
QHYRVICIW	9	Unmodified	_QHYRVICIW_					0	0	0			REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF	REV__ENST00000592891.1_1_19:55831331-55832446:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.5682373046875	3	406.546454	1216.61753	0.3132	0.00012733	1.9961	0.00081149	2.3093	0.00093883	406.5470415751501	42.076	0.81211	41.944	41.716	42.528	-0.13219					46	23	3	0	0	0	0.024511	1	3863	3863		25.574	8.106	1	384670	+		62181	27313	43785	43847	67318	67318					0.017888869650050765
QIAAALENKV	10	Unmodified	_QIAAALENKV_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.805908203125	2	528.806031	1055.59751	-0.24808	-0.00013119	-0.060351	-3.1914E-05	-0.30843	-0.0001631	528.8059932027593	54.264	0.82642	54.117	53.784	54.611	-0.14724					62	23	4	0	0	0	0.66532	1	5900	5900		69.628	3.1983	1	4485100			62182	9894	43786	43848	67319	67319					0.07193414506036788
QIAALIIPTI	10	Unmodified	_QIAALIIPTI_					0	0	0			REV__TRPC4|p.H151Ifs*7|1|0.36|ENSG00000133107|chr13:37746383-37746383|G/-|frameshift_variant	REV__TRPC4|p.H151Ifs*7|1|0.36|ENSG00000133107|chr13:37746383-37746383|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.8237915039062	2	526.839342	1051.66413	0.51733	0.00027255	-1.2295	-0.00064774	-0.71216	-0.00037519	526.8384854410592	68.39	0.41454	68.409	68.158	68.573	0.018913					18	10	2	0	0	0	0.03519	1	8142	8142		26.693	7.3329	1	112880	+		62183	37734	43787	43849	67320	67320					0.14036650067941991
QIAAMDISR	9	Unmodified	_QIAAMDISR_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7876281738281	2	502.763309	1003.51206	-0.56752	-0.00028533	3.2633	0.0016407	2.6958	0.0013554	503.26749777587594	32.345	0.15536	32.357	32.221	32.376	0.011799					5	3	2	0	0	0	0.024427	1	2204	2204		34.173	3.6689	1	60116			62184	4740	43788	43850	67321	67321					0.01044926048734851
QIADIIGLI	9	Unmodified	_QIADIIGLI_					0	0	0			REV__nc|ENSG00000114423|Q13191-2|CBLB	REV__nc|ENSG00000114423|Q13191-2|CBLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2778625488281	2	478.294768	954.574983	-0.79021	-0.00037795	1.1333	0.00054204	0.34308	0.00016409	478.2952049752206	80.936	0.47179	80.96	80.735	81.207	0.023911					18	11	2	0	0	0	0.024436	1	10021	10021		16.473	0	1	239980	+		62185	22121	43789	43851	67322	67322					0.09587815108432096
QIAEDYKR	8	Unmodified	_QIAEDYKR_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.766357421875	2	511.766906	1021.51926	2.035	0.0010415	-2.0201	-0.0010338	0.014975	7.6636E-06	511.76581753117546	24.577	0.69513	24.396	23.983	24.678	-0.18089					26	15	2	0	0	0	0.62178	1	1062	1062		74.255	2.9593	1	854710	+		62186	26216	43790	43852	67323	67323					0.009359819208043518
QIAEDYKR	8	Unmodified	_QIAEDYKR_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.766906	1021.51926	-0.29735	-0.00015218	0.26655	0.00013641	-0.030799	-1.5762E-05	511.7669691989789	24.743	0.63009	24.528	24.134	24.764	-0.2151	0.078565	0.00065607	NaN	74.255	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1007800	+		62187	26216	43790	43852							0.009359819208043518
QIAEDYKR	8	Unmodified	_QIAEDYKR_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.766906	1021.51926	-0.2773	-0.00014191	0.29144	0.00014915	0.014142	7.2372E-06	511.76697305011174	24.599	0.56399	24.424	24.169	24.733	-0.17484	-0.025341	0.00068155	NaN	74.255	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	930760	+		62188	26216	43790	43852							0.009359819208043518
QIAEDYKR	8	Unmodified	_QIAEDYKR_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	511.766906	1021.51926	2.035	0.0010415	-2.0201	-0.0010338	0.014975	7.6636E-06	511.76581753117546	24.577	0.69513	24.396	23.983	24.678	-0.18089	-0.053224	-0.0016844	NaN	74.255	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	854710	+		62189	26216	43790	43852							0.009359819208043518
QIAIGDLGSVK	11	Unmodified	_QIAIGDLGSVK_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2955932617188	2	550.819138	1099.62372	-0.52093	-0.00028694	4.2067	0.0023171	3.6857	0.0020302	550.8212292816586	96.309	1.1084	96.309	95.95	97.058	0					46	25	3	0	0	0	0.02475	1	12226	12226		21.686	9.4791	1	219250	+		62190	21403	43791	43853	67324	67324					0.07789683677515313
QIAKIRETL	9	Unmodified	_QIAKIRETL_					0	0	0			REV__nc|ENSG00000185674|Q86SG7-2|LYG2	REV__nc|ENSG00000185674|Q86SG7-2|LYG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.31982421875	2	536.329673	1070.64479	0.17227	9.2391E-05	-0.95495	-0.00051217	-0.78268	-0.00041978	536.3292010298713	19.084	1.4717	18.881	18.609	20.08	-0.20371					83	29	6	0	0	0	0.024541	1	491	491		16.473	6.2079	1	7254100	+		62191	27784	43792	43854	67325	67325					0.11229693777045213
QIALQMGSL	9	Unmodified	_QIALQMGSL_					0	0	0			REV__ENSG00000162441|ENST00000377223|LZIC	REV__ENSG00000162441|ENST00000377223|LZIC	MSMS	OPSCC_40_ClassI_Rep-3	6	480.7627258300781	2	480.762778	959.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.55	1	74.367	73.867	74.867	-0.18279								0	0	0	0.44038	1	8784	8784		58.782	5.8453	1		+		62192	25443	43793	43855	67326	67326					0.02962711679822405
QIALVRGTA	9	Unmodified	_QIALVRGTA_					0	0	0			REV__ENST00000482862.1_1_7:104909300-105029811:-|nuORF	REV__ENST00000482862.1_1_7:104909300-105029811:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2802429199219	2	464.782359	927.550165	-0.054126	-2.5157E-05	-0.16812	-7.8141E-05	-0.22225	-0.0001033	464.7819987666245	24.534	0.55229	24.319	23.954	24.506	-0.2151					18	12	2	0	0	0	0.024323	1	1096	1096		20.947	3.582	1	211120	+		62193	33496	43794	43856	67327	67327					0.08349180025697933
QIAMGVPLHR	10	Unmodified	_QIAMGVPLHR_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.272216796875	2	561.316043	1120.61753	-0.96372	-0.00054095	-3.0718	-0.0017243	-4.0355	-0.0022652	561.3142126810666	44.589	0.76889	44.484	44.203	44.972	-0.10468					47	19	4	0	0	0	0.03519	1	4241	4241		27.882	3.6795	1	1382900			62194	1585	43795	43857	67328	67328					0.062048869649970584
QIAPPSHLI	9	Unmodified	_QIAPPSHLI_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;TP63|p.R266Q|1|0.2|ENSG00000073282|chr3:189866712-189866712|G/A|missense_variant	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.28509521484375	2	488.284734	974.554916	0.41362	0.00020196	-1.4227	-0.00069469	-1.0091	-0.00049273	488.28412755468884	55.179	1.2032	55.179	54.689	55.892	0					103	33	5	0	0	0	0.15889	4	6056	6045;6056;6068;6079		97.473	11.385	1	52978000			62195	1504	43796	43858	67329;67330;67331;67332	67330					0.06662064168483539
QIAPPSHLI	9	Unmodified	_QIAPPSHLI_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;TP63|p.R266Q|1|0.2|ENSG00000073282|chr3:189866712-189866712|G/A|missense_variant	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2847900390625	2	488.284734	974.554916	-0.19056	-9.3045E-05	-0.85386	-0.00041693	-1.0444	-0.00050997	488.2844135114245	55.255	1.1397	55.105	54.608	55.747	-0.15036					109	31	6	0	0	0	0.17455	2	6044	6034;6044		94.006	7.5455	1	54329000			62196	1504	43796	43858	67333;67334	67334					0.06662064168483539
QIAPPSHLI	9	Unmodified	_QIAPPSHLI_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63;TP63|p.R266Q|1|0.2|ENSG00000073282|chr3:189866712-189866712|G/A|missense_variant	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2850036621094	2	488.284734	974.554916	-1.0073	-0.00049186	0.09609	4.6919E-05	-0.91124	-0.00044494	488.28483154213905	55	1.0817	55.098	54.626	55.707	0.098015					98	29	5	0	0	0	0.15889	5	5974	5951;5962;5974;5986;5999		97.473	12.113	1	53805000			62197	1504	43796	43858	67335;67336;67337;67338;67339	67337					0.06662064168483539
QIARLPSGLP	10	Unmodified	_QIARLPSGLP_					0	0	0		ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2691040039062	2	526.316566	1050.61858	-1.2212	-0.00064273	1.299	0.0006837	0.077828	4.0962E-05	526.3171489114006	54.407	0.54561	54.407	54.144	54.689	0					22	15	2	0	0	0	0.03519	1	5973	5973		23.523	4.4192	1	357040			62198	5326	43797	43859	67340	67340					0.09529424605557324
QIAWQLIGDF	10	Unmodified	_QIAWQLIGDF_					0	0	0			REV__nc|ENSG00000160224|O43918-2|AIRE	REV__nc|ENSG00000160224|O43918-2|AIRE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.25048828125	2	595.813856	1189.61316	-0.84742	-0.0005049	-2.1668	-0.001291	-3.0142	-0.0017959	595.8123279961476	49.305	0.64043	49.025	48.718	49.359	-0.27977					29	14	3	0	0	0	0.03519	1	4891	4891		19.997	0	1	809020	+		62199	25299	43798	43860	67341	67341					0.025937010231018576
QICGAKMLAH	10	Unmodified	_QICGAKMLAH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8031005859375	2	536.275529	1070.53651	-1.5359	-0.00082367	-3.785	-0.0020298	-5.3209	-0.0028535	536.7752714644818	51.021	0.48429	51.108	50.855	51.339	0.087006					24	12	3	0	0	0	0.03519	1	5341	5341		60.972	4.2509	1	78843	+		62200	24799	43799	43861	67342	67342					0.004058629305973227
QICGAKMLAH	10	Unmodified	_QICGAKMLAH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.275529	1070.53651	-0.093504	-5.0144E-05	3.6517	0.0019583	3.5582	0.0019082	536.2773677906183	51.141	0.71228	50.864	50.443	51.156	-0.27643	-0.12188	0.00097815	NaN	68.787	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447090	+		62201	24799	43799	43861							0.004058629305973227
QICINTEGGY	10	Unmodified	_QICINTEGGY_					0	0	0		ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7730712890625	2	549.250231	1096.48591	-0.64772	-0.00035576	-0.56366	-0.00030959	-1.2114	-0.00066535	549.2501140726865	35.469	0.42861	35.283	35.023	35.452	-0.18675					19	10	3	0	0	0	0.03519	1	2694	2694		47.657	8.8512	1	123590			62202	5392	43800	43862	67343	67343					-0.05847387913399871
QICSLIWLPK	10	Unmodified	_QICSLIWLPK_					0	0	0		nc|ENSG00000164287|Q86Y33-2|CDC20B;ENSG00000164287|ENST00000381375|CDC20B	nc|ENSG00000164287|Q86Y33-2|CDC20B	nc|ENSG00000164287|Q86Y33-2|CDC20B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2037048339844	3	400.898493	1199.67365	-0.43412	-0.00017404	3.7477	0.0015024	3.3135	0.0013284	400.9002657910055	25.494	0.24858	25.323	25.2	25.449	-0.17151					7	5	2	0	0	0	0.03519	1	1180	1180		35.178	0	1	29269			62203	7250	43801	43863	67344	67344					0.08180095081797845
QIDDKNVMAKK	11	Unmodified	_QIDDKNVMAKK_					0	0	0			REV__nc|ENSG00000133026|P35580|MYH10	REV__nc|ENSG00000133026|P35580|MYH10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.73773193359375	3	430.567583	1288.68092	-1.1175	-0.00048114	3.0311	0.0013051	1.9136	0.00082394	430.56880327433515	24.784	0.86463	24.736	24.398	25.262	-0.047148					26	19	2	0	0	0	0.024741	1	1087	1087		15.921	0	1	74777	+		62204	23338	43802	43864	67345	67345					0.04812782891576717
QIDEDAQKI	9	Unmodified	_QIDEDAQKI_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.78564453125	2	530.269478	1058.5244	-0.11366	-6.0272E-05	-2.3129	-0.0012264	-2.4265	-0.0012867	530.2679973719194	52.829	0.76092	52.921	52.363	53.123	0.091938					33	19	3	0	0	0	0.019436	1	5623	5623		107.01	34.128	1	658200	+		62205	20901	43803	43865	67346	67346					-0.0025175900723297673
QIDKWLQV	8	Unmodified	_QIDKWLQV_					0	0	0		ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2914428710938	2	515.290017	1028.56548	-0.023386	-1.205E-05	2.8848	0.0014865	2.8614	0.0014745	515.2913387476041	40.044	0.82095	40.044	39.627	40.448	0					53	22	3	0	0	0	0.56592	1	3503	3503		79.451	6.5718	1	2073900			62206	5786	43804	43866	67347	67347					0.05234046822897653
QIDLETGKI	9	Unmodified	_QIDLETGKI_					0	0	0		ENST00000482189.1_1_12:100402990-100403251:-|nuORF;ENST00000508013.3_1_8:48459547-48459730:-|nuORF;ENST00000480755.1_1_19:9794211-9794394:-|nuORF;ENSG00000198034|ENST00000316084|RPS4X	ENST00000482189.1_1_12:100402990-100403251:-|nuORF;ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.8031921386719	2	508.784764	1015.55498	0.039394	2.0043E-05	3.4851	0.0017732	3.5245	0.0017932	508.78580938502995	36.902	0.30889	36.838	36.669	36.978	-0.063385					9	7	2	0	0	0	0.016361	1	2948	2948		136.27	34.667	1	172340			62207	10086;15250	43805	43867	67348	67348					0.04782019377819324
QIDLTVLQRDL	11	Unmodified	_QIDLTVLQRDL_					0	0	0		ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E;ENST00000442009.6_1_9:37489340-37503196:+|nuORF	ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.5865173339844	3	438.585632	1312.73507	0.3301	0.00014478	1.922	0.00084295	2.2521	0.00098772	438.5863931702488	42.593	1.2314	42.619	41.993	43.224	0.026016					91	34	4	0	0	0	0.99147	1	3884	3884		38.714	2.2673	1	2504500			62208	5082	43806	43868	67349	67349					0.09120698314814035
QIDPSIQRV	9	Unmodified	_QIDPSIQRV_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2952880859375	2	528.29583	1054.57711	-1.1136	-0.0005883	0.22298	0.0001178	-0.8906	-0.0004705	528.2959155291035	45.165	0.78088	45.165	44.898	45.679	0					49	22	4	0	0	0	0.16638	3	4354	4354;4365;4378		95.815	18.498	1	4913500		+	62209	520	43807	43869	67350;67351;67352	67350					0.052002438462295686
QIDPSIQRV	9	Unmodified	_QIDPSIQRV_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2952270507812	2	528.29583	1054.57711	-0.88339	-0.00046669	0.1561	8.2467E-05	-0.72729	-0.00038423	528.2958939291715	45.28	0.68471	45.131	44.83	45.515	-0.1488					48	19	4	0	0	0	0.030064	2	4357	4357;4370		141.52	26.026	1	5206600		+	62210	520	43807	43869	67353;67354	67353					0.052002438462295686
QIDPSIQRV	9	Unmodified	_QIDPSIQRV_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.295654296875	2	528.29583	1054.57711	-0.15675	-8.2809E-05	-0.57022	-0.00030124	-0.72696	-0.00038405	528.295496686216	45.153	0.75339	45.196	44.894	45.647	0.043877					52	21	4	0	0	0	0.077175	3	4292	4292;4304;4316		118.74	22.553	1	5070700		+	62211	520	43807	43869	67355;67356;67357	67355					0.052002438462295686
QIDRAINNRT	10	Unmodified	_QIDRAINNRT_					0	0	0			REV__nc|ENSG00000167139|Q8IYX1-2|TBC1D21	REV__nc|ENSG00000167139|Q8IYX1-2|TBC1D21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	400.886304	1199.63708	1.0297	0.00041279	2.5248	0.0010122	3.5545	0.001425	400.88722982005254	22.816	0.65215	22.627	22.281	22.933	-0.18894					38	13	4	0	0	0	0.9068	1	854	854		53.597	8.9574	1	529730	+		62212	26113	43808	43870	67358	67358					0.04524934509436207
QIDSDRRYTL	10	Unmodified	_QIDSDRRYTL_					0	0	0			REV__ENSG00000172461|ENST00000302103|FUT9	REV__ENSG00000172461|ENST00000302103|FUT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5133972167969	3	422.886081	1265.63641	-0.11705	-4.9499E-05	-2.0423	-0.00086368	-2.1594	-0.00091318	423.2197438389987	31.716	0.19943	31.785	31.686	31.886	0.068962					6	4	2	0	0	0	0.03519	1	2086	2086		25.126	13.194	1	43689	+		62213	26673	43809	43871	67359	67359					0.01422095069756324
QIDVEQASYIT	11	Unmodified	_QIDVEQASYIT_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.85931396484375	3	422.878592	1265.61395	-0.26889	-0.00011371	1.1097	0.00046929	0.84086	0.00035558	422.8790047147284	43.319	0.56336	43.082	42.719	43.282	-0.23736					16	14	2	0	0	0	0.024759	1	3901	3901		18.332	0	1	98088	+		62214	28464	43810	43872	67360	67360					-0.00823549118513256
QIEDPLAILIL	11	Unmodified	_QIEDPLAILIL_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.3700561523438	2	619.373746	1236.73294	-0.16048	-9.9398E-05	-4.3897	-0.0027188	-4.5502	-0.0028182	619.3709137357778	100.17	0.80694	100.04	99.717	100.52	-0.12504					57	24	3	0	0	0	1.0238	1	12463	12463		31.53	4.4825	1	1136500			62215	724	43811	43873	67361	67361					0.1240426957699583
QIEKNLIYI	9	Unmodified	_QIEKNLIYI_					0	0	0			REV__nc|ENSG00000134365|Q92496-2|CFHR4	REV__nc|ENSG00000134365|Q92496-2|CFHR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.32958984375	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	0.80003	1	11175	11175		39.253	1.4413	1	4116000	+		62216	23445	43812	43874	67362	67362					0.08819158199935373
QIEKPISIM	9	Unmodified	_QIEKPISIM_					0	0	0		ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3111572265625	2	529.79936	1057.58417	-0.32053	-0.00016982	-0.12397	-6.5679E-05	-0.4445	-0.00023549	529.7998218204208	57.021	0.15351	57.116	57.051	57.204	0.095306					5	3	2	0	0	0	0.024523	1	6317	6317		21.96	0	1	70599			62217	8421	43813	43875	67363	67363					0.057678404024500196
QIELDHVE	8	Unmodified	_QIELDHVE_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7999572753906	2	491.745639	981.476725	0.4677	0.00022999	3.9337	0.0019344	4.4014	0.0021644	491.7473302429347	68.57	0.47591	68.327	68.072	68.548	-0.24277					24	11	3	0	0	0	0.027866	1	7909	7909		16.473	3.0191	1	344390	+		62218	28470	43814	43876	67364	67364					-0.014754132074244808
QIELDHVE	8	Unmodified	_QIELDHVE_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.745639	981.476725	-1.061	-0.00052176	5.4111	0.0026609	4.3501	0.0021391	491.74810907757745	68.587	0.56358	68.325	68.063	68.626	-0.26166	-0.0029449	0.0011253	NaN	10.866	29	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249420	+		62219	28470	43814	43876							-0.014754132074244808
QIELDHVE	8	Unmodified	_QIELDHVE_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.745639	981.476725	0.52484	0.00025809	3.8855	0.0019107	4.4104	0.0021688	491.7473708272733	68.562	0.59995	68.331	68.077	68.677	-0.23048	0.0034735	-0.00037506	NaN	10.866	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390760	+		62220	28470	43814	43876							-0.014754132074244808
QIELTYTIV	9	Unmodified	_QIELTYTIV_					0	0	0			REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7911376953125	2	540.30279	1078.59103	1.1696	0.00063192	-2.1966	-0.0011868	-1.027	-0.00055491	540.3012181558602	82.856	0.51485	82.746	82.509	83.024	-0.11006					25	11	3	0	0	0	0.024405	1	10350	10350		44.117	0	1	425000	+		62221	20549	43815	43877	67365	67365					0.05487476554662862
QIEPFECPK	9	Unmodified	_QIEPFECPK_					0	0	0			REV__nc|ENSG00000134365|Q92496-2|CFHR4	REV__nc|ENSG00000134365|Q92496-2|CFHR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.810546875	2	545.765517	1089.51648	-0.45786	-0.00024988	0.20928	0.00011422	-0.24858	-0.00013567	545.7656935338267	69.873	0.70293	69.651	69.185	69.888	-0.22245					27	16	2	0	0	0	0.024457	1	8146	8146		21.96	0	1	117730	+		62222	23445	43816	43878	67366	67366					-0.024696095283843533
QIERQDQLL	9	Unmodified	_QIERQDQLL_					0	0	0		CEP128|p.E924D|1|0.14|ENSG00000100629|chr14:80743109-80743109|C/A|missense_variant	CEP128|p.E924D|1|0.14|ENSG00000100629|chr14:80743109-80743109|C/A|missense_variant	CEP128|p.E924D|1|0.14|ENSG00000100629|chr14:80743109-80743109|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	572.2625122070312	2	571.811845	1141.60914	-0.27606	-0.00015785	0.66836	0.00038218	0.3923	0.00022432	571.8116990116049	43.317	0.47597	43.347	43.082	43.558	0.030827					30	12	4	0	0	0	0.024344	1	3961	3961		45.972	6.7194	1	612590			62223	252	43817	43879	67367	67367					0.04399611529379399
QIESKEKARQ	10	Unmodified	_QIESKEKARQ_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.8358154296875	2	608.835851	1215.65715	0.19071	0.00011611	1.6648	0.0010136	1.8556	0.0011297	608.8367362655831	109.68	0.91912	109.68	109.28	110.2	0					88	42	4	0	0	0	1.1286	1	13954	13954		25.574	0	1	3655100	+		62224	23016	43818	43880	67368	67368					0.05794685449427561
QIFDAARKPSD	11	Unmodified	_QIFDAARKPSD_					0	0	0			REV__ENSG00000183454|ENST00000330684|GRIN2A	REV__ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.2323913574219	3	416.55081	1246.6306	-0.6208	-0.0002586	1.9439	0.00080972	1.3231	0.00055113	416.55148478891226	24.044	0.56744	23.997	23.741	24.308	-0.047148					29	12	3	0	0	0	0.024757	1	967	967		32.034	11.197	1	135040	+		62225	27574	43819	43881	67369	67369					0.017149965580983917
QIFHGVQVD	9	Unmodified	_QIFHGVQVD_					0	0	0		ENST00000491277.1_1_1:214706191-214706551:-|nuORF	ENST00000491277.1_1_1:214706191-214706551:-|nuORF	ENST00000491277.1_1_1:214706191-214706551:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2906494140625	2	521.769448	1041.52434	-0.085087	-4.4396E-05	-1.1765	-0.00061384	-1.2615	-0.00065823	522.2700725702418	74.854	0.24207	74.578	74.396	74.638	-0.27573					7	5	2	0	0	0	0.024506	1	8831	8831		16.473	0.83134	1	33330			62226	15455	43820	43882	67370	67370					0.005242857834218739
QIFICSQEE	9	Unmodified	_QIFICSQEE_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;nc|ENSG00000178982|Q9UBQ5-2|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.8637084960938	2	548.752607	1095.49066	-0.2498	-0.00013708	1.7583	0.00096485	1.5085	0.00082778	549.2550744173558	36.749	0.3628	36.532	36.326	36.689	-0.21661					13	8	2	0	0	0	0.024313	1	2885	2885		51.193	0	1	41752			62227	8854	43821	43883	67371	67371					-0.0532650377065238
QIFITDCTL	9	Unmodified	_QIFITDCTL_					0	0	0			REV__ENSG00000115216|ENST00000379852|NRBP1	REV__ENSG00000115216|ENST00000379852|NRBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7381591796875	2	527.267893	1052.52123	0.011261	5.9378E-06	2.696	0.0014215	2.7073	0.0014275	527.2693495219736	53.178	0.5268	52.988	52.793	53.32	-0.18982					29	13	3	0	0	0	0.024427	1	5553	5553		26.693	0	1	411440	+		62228	22177	43822	43884	67372	67372					-0.0029272538561144756
QIFKLLDET	9	Unmodified	_QIFKLLDET_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.823974609375	2	553.808239	1105.60193	-0.045051	-2.495E-05	-1.2761	-0.00070673	-1.3212	-0.00073168	553.8076125000727	61.113	0.40929	61.184	60.985	61.394	0.071125					17	10	2	0	0	0	0.024427	1	6978	6978		34.173	0	1	253000	+		62229	20797	43823	43885	67373	67373					0.05334878928965736
QIFKVIVL	8	Unmodified	_QIFKVIVL_					0	0	0			REV__ENST00000260010.6_1_4:154626456-154626489:+|nuORF	REV__ENST00000260010.6_1_4:154626456-154626489:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7664794921875	2	480.318046	958.621539	0.6358	0.00030539	-0.56268	-0.00027027	0.073117	3.512E-05	480.3176190818598	78.46	1.2399	78.268	78.056	79.296	-0.1921					49	29	3	0	0	0	0.027866	1	9810	9810		50.025	7.5501	1	471260	+		62230	29593	43824	43886	67374	67374					0.14057299730359318
QIFNKHFDCIY	11	Unmodified	_QIFNKHFDCIY_					0	0	0			REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.26104736328125	3	476.564062	1426.67036	-0.47838	-0.00022798	-0.81102	-0.00038651	-1.2894	-0.00061448	476.563543368893	28.657	0.37172	28.505	28.283	28.655	-0.15195					14	8	2	0	0	0	0.024801	1	1668	1668		17.833	2.5	1	253430	+		62231	25772	43825	43887	67375	67375					-0.0259119976283273
QIFSIEQRET	10	Unmodified	_QIFSIEQRET_					0	0	0			REV__ENST00000545266.1_1_1:160309586-160309715:-|nuORF	REV__ENST00000545266.1_1_1:160309586-160309715:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.90325927734375	3	417.550698	1249.63027	0.28416	0.00011865	3.7547	0.0015678	4.0389	0.0016864	417.5523941622972	32.22	0.85067	32.027	31.685	32.536	-0.19261					23	19	2	0	0	0	0.03519	1	2190	2190		36.318	4.2835	1	156760	+		62232	34821	43826	43888	67376	67376					0.01543576838230365
QIFTMELWRNE	11	Unmodified	_QIFTMELWRNE_					0	0	0			REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.77789306640625	3	489.574738	1465.70238	-0.088231	-4.3195E-05	-0.34835	-0.00017054	-0.43658	-0.00021374	489.9086724069087	51.324	0.53682	51.047	50.816	51.353	-0.27643					21	13	3	0	0	0	0.024816	1	5280	5280		21.78	11.194	1	104810	+		62233	30272	43827	43889	67377	67377					-0.011838320797323831
QIFVKRFHRWL	11	Unmodified	_QIFVKRFHRWL_					0	0	0			REV__ENST00000563230.1_1_16:79123974-79135149:+|nuORF	REV__ENST00000563230.1_1_16:79123974-79135149:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.63482666015625	3	510.63325	1528.87792	-0.17451	-8.9112E-05	1.8882	0.0009642	1.7137	0.00087508	510.63413904573383	101.77	1.5886	101.78	101	102.59	0.0073471					104	36	4	0	0	0	1.1135	1	13026	13026		5.6988	0	1	234540	+		62234	35217	43828	43890	67378	67378					0.1346379528736179
QIFVWAHCSL	10	Unmodified	_QIFVWAHCSL_					0	0	0			REV__ENST00000366974.8_1_1:212965321-212970536:+|nuORF	REV__ENST00000366974.8_1_1:212965321-212970536:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.88775634765625	3	401.870826	1202.59065	0.93617	0.00037622	-4.1885	-0.0016832	-3.2523	-0.001307	402.20277648568924	23.034	0.41674	22.843	22.617	23.034	-0.19117					10	8	2	0	0	0	0.03519	1	828	828		27.047	12.354	1	17680	+		62235	30996	43829	43891	67379	67379					-0.002542216461733915
QIFWINSL	8	Unmodified	_QIFWINSL_					0	0	0			REV__ENSG00000138780|ENST00000515279|GSTCD	REV__ENSG00000138780|ENST00000515279|GSTCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.3034973144531	2	510.779285	1019.54402	-0.49675	-0.00025373	-0.73553	-0.00037569	-1.2323	-0.00062942	510.7787729425609	26.992	0.53745	26.979	26.704	27.241	-0.012981					29	13	3	0	0	0	0.027866	1	1383	1383		27.882	2.4321	1	741920	+		62236	23900	43830	43892	67380	67380					0.035026617941639415
QIGDYSLNL	9	Unmodified	_QIGDYSLNL_					0	0	0			REV__ENSG00000185247|ENST00000355220|MAGEA11	REV__ENSG00000185247|ENST00000355220|MAGEA11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.7621154785156	2	511.761289	1021.50803	0.37128	0.00019001	0.10448	5.3471E-05	0.47576	0.00024348	511.7613558416419	94.971	1.0715	94.848	94.219	95.291	-0.12251					42	24	2	0	0	0	0.70156	1	11706	11706		45.972	1.8554	1	202270	+		62237	27745	43831	43893	67381	67381					-0.001868401733418068
QIGFLIAPL	9	Unmodified	_QIGFLIAPL_					0	0	0			REV__ENST00000328848.5_1_15:34633997-34634156:-|nuORF	REV__ENST00000328848.5_1_15:34633997-34634156:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7788391113281	2	486.299853	970.585153	0.052115	2.5343E-05	-3.0656	-0.0014908	-3.0134	-0.0014654	486.29821859902825	72.662	0.63543	72.672	72.058	72.693	0.0097733					20	15	2	0	0	0	0.024325	1	8726	8726		31.955	0.42505	1	1176400	+		62238	30434	43832	43894	67382	67382					0.09868422833653767
QIGGKVSVDL	10	Unmodified	_QIGGKVSVDL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.77716064453125	2	508.292756	1014.57096	0.15698	7.9793E-05	-1.3757	-0.00069927	-1.2187	-0.00061948	508.2919692856039	49.343	0.89574	49.343	48.761	49.656	0					42	24	2	0	0	0	0.03519	1	5104	5104		67.494	12.717	1	1200200	+		62239	25017	43833	43895	67383	67383					0.06425725614712974
QIGHELCYL	9	Unmodified	_QIGHELCYL_					0	0	0			REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF;REV__ENST00000550254.1_1_12:49580073-49582762:-|nuORF;REV__ENSG00000178462|ENST00000380419|TUBAL3	REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7831420898438	2	538.265684	1074.51682	-0.15803	-8.5061E-05	0.26412	0.00014217	0.10609	5.7106E-05	538.2658030495521	50.264	0.86181	50.159	49.856	50.718	-0.10558					38	22	3	0	0	0	0.024457	1	5089	5089		29.15	0	1	639940	+		62240	34543;34902;27188	43834	43896	67384	67384					-0.01746189808500276
QIGICKIV	8	Unmodified	_QIGICKIV_					0	0	0			REV__CON__Q3SZR3	REV__CON__Q3SZR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8815002441406	2	437.264956	872.515359	2.4273	0.0010614	-0.71493	-0.00031261	1.7124	0.00074878	437.2645558745566	24.219	0.3491	24.038	23.848	24.198	-0.18089					11	7	2	0	0	0	0.027866	1	1027	1027		19.36	1.0356	1	99734	+	+	62241	19588	43835	43897	67385	67385					0.07400220893396181
QIGICKIV	8	Unmodified	_QIGICKIV_					0	0	0			REV__CON__Q3SZR3	REV__CON__Q3SZR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.264956	872.515359	-0.15705	-6.8671E-05	0.53062	0.00023202	0.37357	0.00016335	437.2655096897244	24.361	0.34781	24.146	23.909	24.257	-0.2151	0.072009	-0.00020828	NaN	19.36	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80075	+	+	62242	19588	43835	43897							0.07400220893396181
QIGICKIV	8	Unmodified	_QIGICKIV_					0	0	0			REV__CON__Q3SZR3	REV__CON__Q3SZR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.264956	872.515359	-0.13306	-5.8184E-05	1.8466	0.00080747	1.7136	0.00074928	437.2656491815769	24.212	0.29997	24.038	23.829	24.129	-0.17484	-0.036317	0.00094261	NaN	19.36	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126580	+	+	62243	19588	43835	43897							0.07400220893396181
QIGIEEGEP	9	Unmodified	_QIGIEEGEP_					0	0	0			REV__ENST00000430014.1_1:144520944-144521145:-|nuORF	REV__ENST00000430014.1_1:144520944-144521145:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2715148925781	2	486.237647	970.460741	-0.73093	-0.00035541	0.64136	0.00031185	-0.089572	-4.3553E-05	486.23770326423283	32.94	0.4884	32.946	32.701	33.189	0.0066261					20	12	2	0	0	0	0.024487	1	2293	2293		17.365	0	1	213420	+		62244	32349	43836	43898	67386	67386					-0.02567119444324817
QIGKPRKR	8	Unmodified	_QIGKPRKR_					0	0	0			REV__GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant	REV__GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.29254150390625	2	491.817067	981.619582	-0.39085	-0.00019223	0.13291	6.5366E-05	-0.25794	-0.00012686	491.81699928577024	22.855	0.46273	22.669	22.46	22.923	-0.18539					23	9	3	0	0	0	0.027866	1	851	851		19.36	3.7182	1	259070	+		62245	36071	43837	43899	67387	67387					0.1280368376512797
QIGLLWRA	8	Unmodified	_QIGLLWRA_					0	0	0			REV__ENSG00000178623|ENST00000407714|GPR35	REV__ENSG00000178623|ENST00000407714|GPR35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.8036804199219	2	478.787444	955.560336	-0.055329	-2.6491E-05	-3.5655	-0.0017071	-3.6208	-0.0017336	478.7857091029597	91.227	1.7279	91.215	90.702	92.43	-0.012375					76	41	4	0	0	0	0.027866	1	11513	11513		23.042	0	1	2240500	+		62246	27195	43838	43900	67388	67388					0.0807778775093766
QIGPALPIAE	10	Unmodified	_QIGPALPIAE_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.714111328125	2	504.78985	1007.56515	-0.053629	-2.7071E-05	-0.43212	-0.00021813	-0.48575	-0.0002452	504.78931441044824	31.667	0.38605	31.426	31.221	31.607	-0.24109					15	9	2	0	0	0	0.03519	1	2101	2101		20.947	11.241	1	165860	+		62247	29143	43839	43901	67389	67389					0.06166627103038991
QIHDISPMI	9	Unmodified	_QIHDISPMI_					0	0	0			REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.27294921875	2	527.273509	1052.53247	0.80448	0.00042418	-0.70247	-0.00037039	0.10201	5.3785E-05	527.2731041589537	58.878	1.4571	58.691	58.386	59.843	-0.18705					74	39	2	0	0	0	0.29158	1	6668	6668		76.774	2.5191	1	3721300	+		62248	25531	43840	43902	67390	67390					0.008300967085460798
QIHEPENL	8	Unmodified	_QIHEPENL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86705327-86705963:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.8118591308594	2	490.245806	978.47706	-0.089986	-4.4115E-05	0.14246	6.9842E-05	0.052477	2.5726E-05	490.2457716170812	25.533	0.29311	25.363	25.163	25.457	-0.17078					11	6	2	0	0	0	0.027866	1	1212	1212		34.173	2.2177	1	82522			62249	3464	43841	43903	67391	67391					-0.013039934875678227
QIHMPGHVE	9	Unmodified	_QIHMPGHVE_					0	0	0		ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2924194335938	2	524.255651	1046.49675	-0.30499	-0.00015989	3.2377	0.0016974	2.9327	0.0015375	524.2572576954143	19.307	0.44343	19.188	19.003	19.446	-0.11872					12	8	2	0	0	0	0.024436	1	385	385		30.504	18.297	1	27502			62250	6786	43842	43904	67392	67392					-0.02463940748452842
QIHNFVVE	8	Unmodified	_QIHNFVVE_					0	0	0			REV__ENST00000483289.2_1_3:169664522-169664633:-|nuORF	REV__ENST00000483289.2_1_3:169664522-169664633:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.287109375	2	493.258717	984.50288	-0.77303	-0.0003813	-3.8222	-0.0018853	-4.5952	-0.0022666	493.2565234072353	29.53	0.23655	29.609	29.41	29.646	0.078346					7	5	2	0	0	0	0.027866	1	1765	1765		31.955	0	1	20605	+		62251	33504	43843	43905	67393	67393					0.010009007547068904
QIHNFVVE	8	Unmodified	_QIHNFVVE_					0	0	0			REV__ENST00000483289.2_1_3:169664522-169664633:-|nuORF	REV__ENST00000483289.2_1_3:169664522-169664633:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.258717	984.50288	-0.54605	-0.00026934	-0.38215	-0.0001885	-0.9282	-0.00045784	493.25928994852694	29.518	0.12285	29.345	29.242	29.365	-0.17258	-0.1316	0.0022558	NaN	37.159	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29806	+		62252	33504	43843	43905							0.010009007547068904
QIHSCISH	8	Carbamidomethyl (C)	_QIHSC(Carbamidomethyl (C))ISH_	QIHSC(1)ISH		QIHSC(63)ISH		0	1	0		NCOA4|p.R58H|1|0.15|ENSG00000266412|chr10:46015235-46015235|C/T|missense_variant	NCOA4|p.R58H|1|0.15|ENSG00000266412|chr10:46015235-46015235|C/T|missense_variant	NCOA4|p.R58H|1|0.15|ENSG00000266412|chr10:46015235-46015235|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.8294982910156	2	491.232176	980.449799	-0.13011	-6.3912E-05	-1.3089	-0.00064298	-1.439	-0.00070689	491.230402236772	26.024	0.22751	25.853	25.698	25.925	-0.17078					15	6	3	0	0	0	0.027866	1	1272	1272		63.306	7.8021	1	177740			62253	18864	43844	43906	67394	67394	242				-0.04120800299608618
QIHWGVVLFL	10	Unmodified	_QIHWGVVLFL_					0	0	0			REV__nc|ENSG00000170417|Q6ZP80-3|TMEM182	REV__nc|ENSG00000170417|Q6ZP80-3|TMEM182	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.57061767578125	3	404.569365	1210.68626	0.91559	0.00037042	1.9207	0.00077708	2.8363	0.0011475	404.57005283006345	29.846	1.2331	29.924	29.646	30.879	0.078344					91	29	5	0	0	0	1.1246	1	1813	1813		23.523	0.14478	1	1825700	+		62254	26469	43845	43907	67395	67395					0.08934874536362258
QIIEIDELT	9	Unmodified	_QIIEIDELT_					0	0	0			REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.310546875	2	537.289879	1072.56521	-1.0569	-0.00056784	0.83791	0.0004502	-0.21895	-0.00011764	537.2910812079148	53.526	0.63158	53.622	53.407	54.038	0.095669					24	17	2	0	0	0	0.024477	1	5738	5738		20.947	4.4738	1	202680	+		62255	32795	43846	43908	67396	67396					0.03182582312365412
QIIGWAQWLP	10	Unmodified	_QIIGWAQWLP_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	606.7715454101562	2	606.332216	1210.64988	-0.63394	-0.00038438	-4.2204	-0.002559	-4.8544	-0.0029434	606.3294921045406	31.769	0.78533	31.611	31.336	32.121	-0.15772					31	18	2	0	0	0	0.03519	1	2176	2176		29.15	1.2673	1	108600			62256	18185	43847	43909	67397	67397					0.05297997639627283
QIIGWAQWLP	10	Unmodified	_QIIGWAQWLP_					0	0	0		nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	nc|ENSG00000114054|P05166-2|PCCB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	606.332216	1210.64988	-0.75655	-0.00045872	-4.147	-0.0025145	-4.9036	-0.0029732	606.329689525227	31.792	0.47785	31.555	31.262	31.74	-0.23666	-0.027918	4.7082E-05	NaN	21.96	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125150			62257	18185	43847	43909							0.05297997639627283
QIIHRNGIP	9	Unmodified	_QIIHRNGIP_					0	0	0		ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.6167602539062	2	524.306532	1046.59851	-0.075985	-3.984E-05	-2.3043	-0.0012082	-2.3803	-0.001248	524.3062371223685	17.973	0.2978	17.766	17.614	17.912	-0.20669					11	5	3	0	0	0	0.024541	1	222	222		24.203	2.5004	1	14478			62258	2227	43848	43910	67398	67398					0.07707673665595394
QIIHRNGIP	9	Unmodified	_QIIHRNGIP_					0	0	0		ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	ENST00000557694.1_1_14:93182479-93199131:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	524.306532	1046.59851	1.0497	0.00055038	-2.6162	-0.0013717	-1.5665	-0.00082132	524.3043890749132	17.541	0.3484	17.387	17.159	17.507	-0.15403	-0.1896	-0.00017009	NaN	24.203	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12068			62259	2227	43848	43910							0.07707673665595394
QIILEYQQAL	10	Unmodified	_QIILEYQQAL_					0	0	0			REV__ENSG00000122012|ENST00000502798|SV2C	REV__ENSG00000122012|ENST00000502798|SV2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.87908935546875	3	406.895806	1217.66559	1.4334	0.00058325	-0.39496	-0.00016071	1.0385	0.00042254	406.89555606405816	20.453	0.58948	20.257	19.993	20.582	-0.19577					24	11	3	0	0	0	0.03519	1	520	520		27.047	0	1	177210	+		62260	22624	43849	43911	67399	67399					0.06546239366025475
QIILISVP	8	Unmodified	_QIILISVP_					0	0	0		ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7878112792969	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	1.0239	2	3676	3662;3676		33.516	6.7195	1	35892000			62261	11217	43850	43912	67400;67401	67401					0.11308733942325944
QIILISVP	8	Unmodified	_QIILISVP_					0	0	0		ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.78790283203125	2	441.786579	881.558604	0.87176	0.00038513	2.2048	0.00097404	3.0765	0.0013592	441.78747647612784	40.712	1.9602	40.589	40.197	42.158	-0.12317					202	55	5	0	0	0	1.0574	1	3669	3669		25.45	0	1	30089000			62262	11217	43850	43912	67402	67402					0.11308733942325944
QIILISVP	8	Unmodified	_QIILISVP_					0	0	0		ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7881164550781	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	1.043	1	3593	3593		30.504	0	1	39693000			62263	11217	43850	43912	67403	67403					0.11308733942325944
QIILISVP	8	Unmodified	_QIILISVP_					0	0	0		ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.78790283203125	2	441.786579	881.558604	-0.73639	-0.00032533	3.7839	0.0016717	3.0475	0.0013464	441.78816325900505	40.674	1.7833	40.537	40.09	41.874	-0.13704					126	47	4	0	0	0	1.0338	1	3500	3500		31.955	0	1	20144000			62264	11217	43850	43912	67404	67404					0.11308733942325944
QIILISVP	8	Unmodified	_QIILISVP_					0	0	0		ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	ENST00000228506.7_1_12:121134956-121135184:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.7880554199219	2	441.786579	881.558604	-0.29735	-0.00013137	3.287	0.0014522	2.9897	0.0013208	441.7879427918054	40.843	1.9371	40.615	40.184	42.121	-0.2278					180	51	6	0	0	0	1.0009	1	3532	3532		37.159	0	1	18973000			62265	11217	43850	43912	67405	67405					0.11308733942325944
QIINLVEP	8	Unmodified	_QIINLVEP_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2587890625	2	463.271293	924.528032	-0.76103	-0.00035256	-1.795	-0.00083159	-2.5561	-0.0011842	463.27041356552365	21.564	0.57447	21.564	21.293	21.868	0					28	11	3	0	0	0	0.027866	1	657	657		37.159	0	1	195480	+		62266	28147	43851	43913	67406	67406					0.06274955557273643
QIIPCKAP	8	Unmodified	_QIIPCKAP_					0	0	0		ENST00000463727.1_1_10:129868414-129869560:+|nuORF	ENST00000463727.1_1_10:129868414-129869560:+|nuORF	ENST00000463727.1_1_10:129868414-129869560:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.27392578125	2	435.249306	868.484059	-0.68953	-0.00030012	-3.2254	-0.0014039	-3.9149	-0.001704	435.24777820430177	54.247	0.80778	54.111	53.661	54.469	-0.13616					47	24	3	0	0	0	0.027866	1	5809	5809		19.36	0	1	500130			62267	14739	43852	43914	67407	67407					0.04455647859288092
QIIRLPLRLIN	11	Unmodified	_QIIRLPLRLIN_					0	0	0		ENSG00000179817|ENST00000314254|MRGPRX4	ENSG00000179817|ENST00000314254|MRGPRX4	ENSG00000179817|ENST00000314254|MRGPRX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2664794921875	3	450.297756	1347.87144	0.18327	8.2526E-05	-4.259	-0.0019178	-4.0757	-0.0018353	450.6301009470099	54.504	0.69434	54.354	54.051	54.745	-0.15036					24	19	2	0	0	0	0.024723	1	5888	5888		22.562	0	1	116830			62268	8925	43853	43915	67408	67408					0.2114185733598788
QIISRQELP	9	Unmodified	_QIISRQELP_					0	0	0		ENST00000484843.1_1_4:106638770-106744253:+|nuORF;ENSG00000138780|ENST00000515279|GSTCD	ENST00000484843.1_1_4:106638770-106744253:+|nuORF	ENST00000484843.1_1_4:106638770-106744253:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.79638671875	2	542.31148	1082.60841	-1.1284	-0.00061196	1.7947	0.00097326	0.66622	0.0003613	542.3118747840713	40.747	1.157	40.77	40.237	41.394	0.023006					115	32	6	0	0	0	0.024466	1	3464	3464		39.253	14.734	1	5559500			62269	5285	43854	43916	67409	67409					0.07040816880339662
QIKAKKKLM	9	Unmodified	_QIKAKKKLM_					0	0	0		nc|ENSG00000163072|Q8IVI9-4|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN	nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2974853515625	2	544.354637	1086.69472	-0.6551	-0.00035661	-2.9827	-0.0016237	-3.6378	-0.0019803	544.3529005559848	54.042	0.62673	53.844	53.619	54.246	-0.19739					34	18	3	0	0	0	0.024487	1	5664	5664		17.365	8.6713	1	937180			62270	18440	43855	43917	67410	67410					0.15484105181326413
QIKAKLVAQ	9	Unmodified	_QIKAKLVAQ_					0	0	0			REV__ENSG00000178878|ENST00000356591|APOLD1	REV__ENSG00000178878|ENST00000356591|APOLD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.21826171875	2	499.821484	997.628415	0.36532	0.00018259	-0.34931	-0.00017459	0.016006	8E-06	499.8210635989836	32.41	0.38848	32.217	32.029	32.417	-0.19261					12	8	2	0	0	0	0.024495	1	2224	2224		19.997	0	1	79545	+		62271	27211	43856	43918	67411	67411					0.12950612610927692
QIKASKTTVTG	11	Unmodified	_QIKASKTTVTG_					0	0	0		ENST00000485605.1_1_19:43015056-43023397:-|nuORF;CEACAM1|p.I383Nfs*15|1|0.24|ENSG00000079385|chr19:42519046-42519047|-/T|frameshift_variant;nc|ENSG00000079385|P13688-2|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1	ENST00000485605.1_1_19:43015056-43023397:-|nuORF	ENST00000485605.1_1_19:43015056-43023397:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.330078125	2	567.32987	1132.64519	-0.4315	-0.0002448	-0.024713	-1.4021E-05	-0.45621	-0.00025882	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.0344	1	11451	11451		29.17	2.4771	1	13648000			62272	246	43857	43919	67412	67412					0.08417068706239661
QIKDVNLEV	9	Unmodified	_QIKDVNLEV_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2982177734375	2	529.298039	1056.58152	-0.77065	-0.0004079	-0.83744	-0.00044326	-1.6081	-0.00085116	529.297329750578	51.968	1.5576	52.06	51.344	52.902	0.091942					86	37	4	0	0	0	0.067814	2	5465	5454;5465		122.18	5.3716	1	8195200			62273	3991	43858	43920	67413;67414	67414					0.0554970826913177
QIKEEVLKI	9	Unmodified	_QIKEEVLKI_					0	0	0			REV__nc|ENSG851|Q9QC07|ERVK-18_pol;REV__nc|ENSG821|P63135|ERVK-7_pol;REV__nc|ENSG855|P10266|ERVK-10_pol;REV__nc|ENSG826|Q9BXR3|ERVK-6_gag	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2891235351562	2	550.339707	1098.66486	-0.47966	-0.00026398	-0.38058	-0.00020945	-0.86024	-0.00047343	550.339381135514	47.808	0.62814	47.71	47.485	48.114	-0.097553					36	16	3	0	0	0	0.023274	1	4747	4747		77.318	16.346	1	558140	+		62274	37252;37249;37253;37250	43859	43921	67415	67415					0.1194744471699778
QIKELVGLTKL	11	Unmodified	_QIKELVGLTKL_					0	0	0			REV__ENST00000549159.1_1_14:31081376-31085737:+|nuORF	REV__ENST00000549159.1_1_14:31081376-31085737:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3931884765625	2	621.395013	1240.77547	0.38114	0.00023684	-3.6806	-0.0022871	-3.2994	-0.0020502	621.3925178018	103.51	0.68594	103.34	103.12	103.81	-0.17034					47	16	4	0	0	0	1.0624	1	12849	12849		21.686	0.73882	1	476900	+		62275	20927	43860	43922	67416	67416					0.1647166470522734
QIKESEGVVND	11	Unmodified	_QIKESEGVVND_					0	0	0		ENST00000538503.5_1_12:121881458-121882696:-|nuORF	ENST00000538503.5_1_12:121881458-121882696:-|nuORF	ENST00000538503.5_1_12:121881458-121882696:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.73974609375	3	406.538458	1216.59355	-0.53568	-0.00021777	2.4854	0.0010104	1.9497	0.00079264	406.5391956963924	31.55	0.66373	31.398	31.161	31.825	-0.15231					33	16	3	0	0	0	0.02474	1	2106	2106		13.73	0	1	573930			62276	16390	43861	43923	67417	67417					-0.0060871977832448465
QIKGSITL	8	Unmodified	_QIKGSITL_					0	0	0			REV__nc|ENSG00000167107|Q96CM8-4|ACSF2	REV__nc|ENSG00000167107|Q96CM8-4|ACSF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	430.2661437988281	2	430.26601	858.517468	0.29739	0.00012796	-0.15777	-6.7885E-05	0.13962	6.0072E-05	430.2658110079282	24.281	0.89754	24.066	23.822	24.72	-0.2151					37	20	2	0	0	0	0.81662	1	1051	1051		57.811	0	1	960640	+		62277	26106	43862	43924	67418	67418					0.08254972902830104
QIKLMNVAI	9	Unmodified	_QIKLMNVAI_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.T594Nfs*5|1|0.13|ENSG00000127914|chr7:92001697-92001712|ACAAATTACAAGATAA/-|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.801513671875	2	515.309895	1028.60524	-0.25172	-0.00012971	0.90578	0.00046676	0.65406	0.00033704	515.3104106648938	60.161	0.87399	60.161	59.745	60.619	0					44	23	2	0	0	0	0.024294	1	6861	6861		37.159	0	1	1461800			62278	4266	43863	43925	67419	67419					0.09207850501957182
QIKMLKRES	9	Unmodified	_QIKMLKRES_					0	0	0		ENST00000520693.5_1_5:133622066-133644414:-|nuORF;ENST00000520515.5_1_5:133541561-133657575:-|nuORF;ENSG00000006837|ENST00000265334|CDKL3;ENST00000519312.5_1_5:133622211-133644013:-|nuORF	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	ENST00000520693.5_1_5:133622066-133644414:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.81103515625	2	566.828983	1131.64341	-0.30038	-0.00017026	-4.3264	-0.0024524	-4.6268	-0.0026226	566.8265454009055	69.305	0.24841	69.083	68.937	69.185	-0.22245					7	5	2	0	0	0	0.024541	1	8040	8040		16.473	0	1	41841			62279	804	43864	43926	67420	67420					0.08285736416655709
QIKPLRAREQ	10	Unmodified	_QIKPLRAREQ_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8695068359375	2	619.870028	1237.7255	-0.39229	-0.00024317	-0.62947	-0.00039019	-1.0218	-0.00063336	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.1286	1	12124	12124		25.574	0	1	4658300	+		62280	20317	43865	43927	67421	67421					0.11614974819917734
QIKQFKEF	8	Unmodified	_QIKQFKEF_					0	0	0		ENSG00000100575|ENST00000395159|TIMM9	ENSG00000100575|ENST00000395159|TIMM9	ENSG00000100575|ENST00000395159|TIMM9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7738647460938	2	534.297842	1066.58113	-0.37469	-0.0002002	-0.93421	-0.00049914	-1.3089	-0.00069934	534.2971722286571	47.577	0.69354	47.308	46.977	47.671	-0.26939					46	18	4	0	0	0	0.027866	1	4675	4675		45.952	0	1	1219800			62281	2219	43866	43928	67422	67422					0.05050333339931967
QIKQKVDSL	9	Unmodified	_QIKQKVDSL_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000556181.1_1_14:58988389-58988443:+|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.8139038085938	2	529.813856	1057.61316	-1.1093	-0.0005877	0.5461	0.00028933	-0.56317	-0.00029837	529.8141415398096	29.367	1.1955	29.122	28.838	30.034	-0.24524					74	27	5	0	0	0	0.12602	3	1781	1781;1793;1806		104.75	25.034	1	3829100			62282	1983	43867	43929	67423;67424;67425	67423					0.0866570102307378
QIKQKVDSL	9	Unmodified	_QIKQKVDSL_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000556181.1_1_14:58988389-58988443:+|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.813720703125	2	529.813856	1057.61316	-0.92254	-0.00048878	0.30585	0.00016204	-0.6167	-0.00032673	529.8140082709671	29.308	1.2796	29.135	28.85	30.13	-0.17258					72	29	4	0	0	0	0.14024	3	1786	1765;1774;1786		101.6	22.15	1	4143600			62283	1983	43867	43929	67426;67427;67428	67428					0.0866570102307378
QIKQKVDSL	9	Unmodified	_QIKQKVDSL_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000556181.1_1_14:58988389-58988443:+|nuORF;ENST00000571636.1_1_16:11336795-11337332:+|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8135986328125	2	529.813856	1057.61316	-0.25549	-0.00013536	-0.42876	-0.00022716	-0.68426	-0.00036253	529.8136235246992	29.299	1.1432	29.149	28.869	30.012	-0.14952					73	26	5	0	0	0	0.15366	1	1755	1755		98.629	29.002	1	4402800			62284	1983	43867	43929	67429	67429					0.0866570102307378
QIKRNRCYSD	10	Unmodified	_QIKRNRCYSD_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7293701171875	3	428.215544	1281.6248	0.2055	8.7999E-05	2.2634	0.00096921	2.4689	0.0010572	428.2162969428532	29.788	1.4829	29.638	28.657	30.14	-0.14952					75	34	3	0	0	0	0.03519	1	1696	1696		26.063	4.283	1	911450			62285	13766	43868	43930	67430	67430					-0.004744252252294245
QIKTLNQKI	9	Unmodified	_QIKTLNQKI_					0	0	0		EMILIN2|p.D413N|1|0.17|ENSG00000132205|chr18:2891364-2891364|G/A|missense_variant	EMILIN2|p.D413N|1|0.17|ENSG00000132205|chr18:2891364-2891364|G/A|missense_variant	EMILIN2|p.D413N|1|0.17|ENSG00000132205|chr18:2891364-2891364|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3377075195312	2	543.337498	1084.66044	-0.98427	-0.00053479	0.18444	0.00010021	-0.79983	-0.00043458	543.3375877430747	48.614	1.6346	48.614	48.243	49.878	0					101	45	5	0	0	0	0.14024	1	4997	4997		101.6	0.34809	1	9406200			62286	705	43869	43931	67431	67431					0.12149980294066154
QIKVPVVNI	9	Unmodified	_QIKVPVVNI_					0	0	0		ENST00000395603.7_1_X:76939207-76939318:-|nuORF	ENST00000395603.7_1_X:76939207-76939318:-|nuORF	ENST00000395603.7_1_X:76939207-76939318:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.781005859375	2	505.32386	1008.63317	-0.43883	-0.00022175	0.48865	0.00024693	0.049821	2.5176E-05	505.32395147743284	82.631	0.9411	82.631	82.154	83.095	0					41	21	2	0	0	0	0.024436	1	10378	10378		16.473	5.6076	1	400390			62287	13525	43870	43932	67432	67432					0.12919496753693238
QIKVPVVNI	9	Unmodified	_QIKVPVVNI_					0	0	0		ENST00000395603.7_1_X:76939207-76939318:-|nuORF	ENST00000395603.7_1_X:76939207-76939318:-|nuORF	ENST00000395603.7_1_X:76939207-76939318:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.32386	1008.63317	0.57144	0.00028876	-0.40145	-0.00020286	0.16999	8.59E-05	505.3236237257312	82.709	0.56514	82.488	82.173	82.738	-0.22015	-0.071506	-0.00078051	NaN	16.473	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27640			62288	13525	43870	43932							0.12919496753693238
QIKWLGGGRAM	11	Unmodified	_QIKWLGGGRAM_					0	0	0			REV__ENST00000415030.6_1_11:118007494-118007596:-|nuORF	REV__ENST00000415030.6_1_11:118007494-118007596:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.8356323242188	2	608.8346	1215.65465	0.19071	0.00011611	3.7199	0.0022648	3.9106	0.0023809	608.8367362655831	109.68	0.91912	109.68	109.28	110.2	0					88	42	4	0	0	0	1.0238	1	13950	13950		31.53	3.4483	1	3655100	+		62289	32046	43871	43933	67433	67433					0.05544558510769093
QILAFCICW	9	Unmodified	_QILAFCICW_					0	0	0		ENST00000471788.1_1_2:207651391-207655428:+|nuORF	ENST00000471788.1_1_2:207651391-207655428:+|nuORF	ENST00000471788.1_1_2:207651391-207655428:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.8224487304688	2	548.769548	1095.52454	-0.23009	-0.00012627	1.4167	0.00077745	1.1866	0.00065118	548.7695012630663	57.125	0.47755	56.9	56.661	57.138	-0.2248					27	12	3	0	0	0	0.024466	1	6192	6192		18.324	0	1	287060			62290	14968	43872	43934	67434	67434					-0.019397538126213476
QILCLGPFV	9	Unmodified	_QILCLGPFV_					0	0	0			REV__ENSG00000103042|ENST00000219320|SLC38A7	REV__ENSG00000103042|ENST00000219320|SLC38A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7946472167969	2	495.278063	988.541574	0.10055	4.98E-05	1.2604	0.00062425	1.361	0.00067405	495.2787675783299	95.81	0.3875	95.81	95.562	95.95	0					13	8	2	0	0	0	0.024386	1	12209	12209		42.474	1.9018	1	57938	+		62291	21347	43873	43935	67435	67435					0.04684490064869351
QILCLRPE	8	Unmodified	_QILCLRPE_					0	0	0			REV__ENSG00000075643|ENST00000261326|MOCOS	REV__ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29132080078125	2	486.27077	970.526987	-0.36813	-0.00017901	-1.4749	-0.0007172	-1.843	-0.00089621	486.27129419999704	60.071	0.32656	59.871	59.727	60.053	-0.20016					12	8	2	0	0	0	0.027866	1	6840	6840		29.15	0	1	85409	+		62292	20554	43874	43936	67436	67436					0.04054417916722741
QILCVVKCHLA	11	Unmodified	_QILCVVKCHLA_					0	0	0			REV__ENSG00000174780|ENST00000642900|SRP72	REV__ENSG00000174780|ENST00000642900|SRP72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5503234863281	3	409.563116	1225.66752	-0.037557	-1.5382E-05	-3.4897	-0.0014293	-3.5273	-0.0014446	409.8953255914996	53.076	0.51645	52.929	52.758	53.275	-0.14723					18	13	2	0	0	0	0.024732	1	5702	5702		17.167	0	1	72318	+		62293	26891	43875	43937	67437	67437					0.0637125357864079
QILDFPPI	8	Unmodified	_QILDFPPI_					0	0	0		ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7543640136719	2	471.768386	941.522219	-0.11526	-5.4375E-05	0.98548	0.00046492	0.87023	0.00041055	471.7687055160669	32.794	0.60009	32.794	32.379	32.979	0					19	15	2	0	0	0	0.027866	1	2257	2257		35.201	9.7505	1	358410			62294	11004	43876	43938	67438	67438					0.04911857045601664
QILELCPNLEH	11	Unmodified	_QILELCPNLEH_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.88134765625	3	436.892067	1307.65437	-0.39497	-0.00017256	1.3138	0.000574	0.91885	0.00040144	437.22728379595105	39.647	0.31301	39.424	39.149	39.462	-0.22311					10	7	2	0	0	0	0.016448	1	3357	3357		120.27	5.4143	1	407490			62295	3693	43877	43939	67439	67439					0.012850940002408606
QILELELNF	9	Unmodified	_QILELELNF_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2647705078125	2	559.808239	1117.60193	-0.56835	-0.00031817	1.058	0.00059228	0.48965	0.00027411	559.8086443176966	82.749	0.59854	82.776	82.575	83.173	0.026558					43	13	4	0	0	0	0.024418	1	10254	10254		45.972	19.279	1	1119900			62296	8357	43878	43940	67440	67440					0.04782878928926948
QILENFEKDET	11	Unmodified	_QILENFEKDET_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.88818359375	3	455.889268	1364.64598	-0.40027	-0.00018248	-3.267	-0.0014894	-3.6673	-0.0016719	455.8880971202761	37.685	2.0462	37.685	37.379	39.425	0					149	57	6	0	0	0	0.24661	4	3083	3074;3083;3107;3119		94.409	13.493	1	35029000			62297	1916	43879	43941	67441;67442;67443;67444	67442					-0.021761814353567388
QILENFEKDET	11	Unmodified	_QILENFEKDET_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.88812255859375	3	455.889268	1364.64598	-0.5675	-0.00025872	-2.9699	-0.001354	-3.5374	-0.0016127	455.8882456448457	37.568	2.3176	37.504	37.163	39.481	-0.063389					185	64	6	0	0	0	0.40024	7	3080	3033;3043;3055;3067;3080;3095;3106		82.831	8.9894	1	28915000			62298	1916	43879	43941	67445;67446;67447;67448;67449;67450;67451	67449					-0.021761814353567388
QILENFEKDET	11	Unmodified	_QILENFEKDET_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.887939453125	3	455.889268	1364.64598	-0.61693	-0.00028125	-3.1703	-0.0014453	-3.7872	-0.0017265	455.8881236245089	37.8	2.3011	37.832	37.413	39.714	0.032269					183	63	6	0	0	0	0.17212	5	3091	3030;3040;3052;3064;3091		102.06	12.569	1	25561000			62299	1916	43879	43941	67452;67453;67454;67455;67456	67456					-0.021761814353567388
QILENFEKDET	11	Unmodified	_QILENFEKDET_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.88824462890625	3	455.889268	1364.64598	-0.11754	-5.3587E-05	-3.3244	-0.0015156	-3.442	-0.0015691	455.88809469324485	37.81	1.966	37.63	37.323	39.289	-0.17929					174	54	7	0	0	0	0.61955	4	3053	3053;3077;3089;3104		68.626	9.9962	1	42577000			62300	1916	43879	43941	67457;67458;67459;67460	67457					-0.021761814353567388
QILENFEKDET	11	Unmodified	_QILENFEKDET_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.8883361816406	3	455.889268	1364.64598	-0.9577	-0.00043661	-2.5871	-0.0011794	-3.5448	-0.001616	455.8884741154768	37.813	2.434	37.594	37.192	39.626	-0.2195					202	65	7	0	0	0	0.51058	2	3095	3082;3095		75.652	10.147	1	45333000			62301	1916	43879	43941	67461;67462	67462					-0.021761814353567388
QILENFEKDET	11	Unmodified	_QILENFEKDET_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.8880920410156	3	455.889268	1364.64598	-0.94293	-0.00042987	-2.5949	-0.001183	-3.5379	-0.0016129	455.88845566359197	37.843	2.4408	37.624	37.304	39.745	-0.21848					203	66	6	0	0	0	0.4516	4	3064	3030;3040;3064;3089		79.489	5.1106	1	44189000			62302	1916	43879	43941	67463;67464;67465;67466	67465					-0.021761814353567388
QILENPCSL	9	Unmodified	_QILENPCSL_					0	0	0		ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.8093566894531	2	508.757692	1015.50083	-0.059041	-3.0038E-05	-0.2115	-0.0001076	-0.27054	-0.00013764	508.7573802521603	61.582	0.57915	61.368	61.083	61.662	-0.21375					19	13	2	0	0	0	0.020937	1	6895	6895		67.494	25.098	1	181230			62303	5908	43880	43942	67467	67467					-0.0062989604541598965
QILENPCSL	9	Unmodified	_QILENPCSL_					0	0	0		ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.808837890625	2	508.757692	1015.50083	-0.38609	-0.00019643	0.29139	0.00014825	-0.094695	-4.8177E-05	508.7574169995173	61.657	0.49175	61.4	61.175	61.667	-0.25725					19	11	2	0	0	0	0.023454	1	6875	6875		52.937	21.407	1	212750			62304	5908	43880	43942	67468	67468					-0.0062989604541598965
QILFFEPTL	9	Unmodified	_QILFFEPTL_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7864990234375	2	554.307875	1106.6012	-1.05	-0.00058201	-4.4669	-0.0024761	-5.5169	-0.0030581	554.304928983952	55.651	0.25916	55.494	55.348	55.607	-0.15656					9	6	2	0	0	0	0.024495	1	5994	5994		19.997	0.6368	1	47074	+		62305	19300	43881	43943	67469	67469					0.05216084279913957
QILKLRKE	8	Unmodified	_QILKLRKE_					0	0	0		ENST00000373797.1_1_1:29314403-29319920:+|nuORF	ENST00000373797.1_1_1:29314403-29319920:+|nuORF	ENST00000373797.1_1_1:29314403-29319920:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2876586914062	2	514.334759	1026.65496	1.9279	0.0009916	-2.4086	-0.0012388	-0.48062	-0.0002472	514.3334611723537	24.792	0.39341	24.611	24.329	24.723	-0.18089					10	8	2	0	0	0	0.027866	1	1067	1067		76.847	0	1	58995			62306	13093	43882	43944	67470	67470					0.14270301502278926
QILKRVRRKI	10	Unmodified	_QILKRVRRKI_					0	0	0		nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3;ENST00000486056.1_1_9:35733177-35736720:+|nuORF	nc|ENSG00000107175|O43889-3|CREB3	nc|ENSG00000107175|O43889-3|CREB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.8815002441406	3	437.301612	1308.88301	-0.7797	-0.00034096	1.4937	0.00065321	0.71403	0.00031225	437.3024085545074	39.528	0.10382	39.429	39.377	39.48	-0.098755					4	2	2	0	0	0	0.03519	1	3391	3391		25.126	0	1	40324			62307	2829	43883	43945	67471	67471					0.24092099149970636
QILLKLVE	8	Unmodified	_QILLKLVE_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.2835693359375	2	478.312961	954.611368	0.09728	4.653E-05	-1.054	-0.00050416	-0.95676	-0.00045763	478.31229125571326	75.684	0.35632	75.412	75.186	75.542	-0.27266					11	8	2	0	0	0	0.027866	1	8944	8944		17.365	4.4058	1	103980	+		62308	20230	43884	43946	67472	67472					0.13224692005132965
QILLLRKN	8	Unmodified	_QILLLRKN_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.8091125488281	2	499.329476	996.6444	-0.77531	-0.00038713	0.71397	0.00035651	-0.061335	-3.0626E-05	499.32969984084406	38.514	0.51772	38.293	38.021	38.539	-0.22148					26	13	3	0	0	0	0.027866	1	3138	3138		18.324	0.95945	1	231390			62309	2866	43885	43947	67473	67473					0.1459431884784408
QILNNTLRV	9	Unmodified	_QILNNTLRV_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7981567382812	2	535.819473	1069.62439	-0.63475	-0.00034011	2.6663	0.0014286	2.0315	0.0010885	536.3226880141684	66.397	0.42478	66.115	65.826	66.251	-0.28148					18	10	2	0	0	0	0.022083	1	7859	7859		87.754	8.0417	1	724170	+		62310	21027	43886	43948	67474	67474					0.09236523117237994
QILPNAQLVFS	11	Unmodified	_QILPNAQLVFS_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	615.2830200195312	2	615.348063	1228.68157	-0.24187	-0.00014883	-3.7683	-0.0023188	-4.0101	-0.0024676	615.3452285300639	55.236	0.30304	55.03	54.941	55.244	-0.20613					11	8	2	0	0	0	0.02475	1	5903	5903		42.864	21.917	1	113660			62311	6576	43887	43949	67475	67475					0.07637945602959917
QILPNAQLVFS	11	Unmodified	_QILPNAQLVFS_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	615.348063	1228.68157	-0.21729	-0.00013371	-3.2531	-0.0020018	-3.4704	-0.0021355	615.3459407835093	55.166	0.44604	55.166	54.944	55.39	0	0.10646	-0.00051069	NaN	42.864	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387080			62312	6576	43887	43949							0.07637945602959917
QILPNAQLVFS	11	Unmodified	_QILPNAQLVFS_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	615.348063	1228.68157	-0.14705	-9.0486E-05	-3.406	-0.0020959	-3.5531	-0.0021864	615.3457743137005	55.231	0.44215	55.081	54.894	55.336	-0.15036	0.021441	-0.00069884	NaN	42.864	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385940			62313	6576	43887	43949							0.07637945602959917
QILPNAQLVFS	11	Unmodified	_QILPNAQLVFS_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	615.348063	1228.68157	-1.266	-0.00077905	-2.0791	-0.0012793	-3.3451	-0.0020584	615.3465744143214	54.864	0.341	54.962	54.807	55.148	0.098015	-0.097391	0.00093422	NaN	42.864	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304350			62314	6576	43887	43949							0.07637945602959917
QILPRRSE	8	Unmodified	_QILPRRSE_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.7918395996094	2	499.790715	997.566878	-0.46747	-0.00023364	0.0031264	1.5625E-06	-0.46434	-0.00023207	499.7906557352374	29.635	0.96934	29.485	29.129	30.099	-0.14952					45	22	4	0	0	0	0.89627	1	1799	1799		51.335	0	1	4404700	+		62315	27888	43888	43950	67476	67476					0.06799680911660744
QILRGASEL	9	Unmodified	_QILRGASEL_					0	0	0			REV__TLN1|p.G1612R|1|0.18|ENSG00000137076|chr9:35707193-35707193|C/G|missense_variant	REV__TLN1|p.G1612R|1|0.18|ENSG00000137076|chr9:35707193-35707193|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.78497314453125	2	493.785099	985.555644	-0.16765	-8.2781E-05	-0.49274	-0.00024331	-0.66039	-0.00032609	493.78483325201876	27.471	1.4147	27.315	26.503	27.918	-0.15664					77	33	5	0	0	0	0.31247	1	1517	1517		73.975	0	1	4793900	+		62316	37698	43889	43951	67477	67477					0.06228858817530636
QILRGSPEPS	10	Unmodified	_QILRGSPEPS_					0	0	0			REV__DBX2|p.E300G|1|0.33|ENSG00000185610|chr12:45016407-45016407|T/C|missense_variant	REV__DBX2|p.E300G|1|0.33|ENSG00000185610|chr12:45016407-45016407|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2954711914062	2	542.293288	1082.57202	2.3651	0.0012826	1.4645	0.00079417	3.8296	0.0020768	542.2939958365852	18.163	0.978	18.163	17.746	18.724	0					44	19	3	0	0	0	1.1329	1	270	270		27.882	0	1	848620	+		62317	19651	43890	43952	67478	67478					0.03403939983604687
QILTKSPQ	8	Unmodified	_QILTKSPQ_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7557373046875	2	457.768917	913.523281	-0.31251	-0.00014306	-0.62688	-0.00028697	-0.93939	-0.00043002	457.7683921602935	20.602	0.72461	20.497	19.981	20.705	-0.10477					24	14	2	0	0	0	0.027866	1	566	566		40.778	7.9657	1	332230			62318	2351	43891	43953	67479	67479					0.06306071414519465
QILYKEYKSC	10	Unmodified	_QILYKEYKSC_					0	0	0			REV__ENST00000309683.10_1_7:63980900-63980948:-|nuORF	REV__ENST00000309683.10_1_7:63980900-63980948:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.7656555175781	3	425.553163	1273.63766	0.27563	0.0001173	-2.559	-0.001089	-2.2833	-0.00097168	425.55192875619406	71.385	0.9565	71.123	70.602	71.559	-0.26199					29	11	3	0	0	0	0.03519	1	8323	8323		16.007	0.086121	1	565090	+		62319	30166	43892	43954	67480	67480					0.011785931142867412
QIMKEIRKP	9	Unmodified	_QIMKEIRKP_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.26220703125	2	571.839351	1141.66415	-0.81371	-0.00046531	-3.3555	-0.0019188	-4.1692	-0.0023841	571.8373629788244	42.755	0.39746	42.755	42.569	42.967	0					18	10	2	0	0	0	0.024541	1	3983	3983		24.519	14.254	1	312740			62320	2428	43893	43955	67481	67481					0.09898326796292167
QINHKEAQE	9	Unmodified	_QINHKEAQE_					0	0	0			REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	REV__ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.8637084960938	2	548.772719	1095.53089	-0.23114	-0.00012684	1.9041	0.0010449	1.673	0.00091807	548.7736425158917	36.702	0.36421	36.485	36.245	36.61	-0.21661					13	8	2	0	0	0	0.024319	1	2885	2885		47.657	1.6851	1	98828	+		62321	33406	43894	43956	67482	67482					-0.013058210558483552
QINKDPDL	8	Unmodified	_QINKDPDL_					0	0	0		nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8;nc|ENSG00000179603|O00222-3|GRM8	nc|ENSG00000179603|O00222-2|GRM8	nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2927551269531	2	471.748182	941.481811	0.43428	0.00020487	0.31116	0.00014679	0.74544	0.00035166	471.7480581724825	49.751	0.86875	49.599	49.292	50.16	-0.1512					69	23	5	0	0	0	0.027866	1	5207	5207		71.296	14.575	1	2148000			62322	8909	43895	43957	67483	67483					0.008728906551823457
QINNQVVQL	9	Unmodified	_QINNQVVQL_					0	0	0		ENST00000396355.5_1_16:15818059-15818287:+|nuORF	ENST00000396355.5_1_16:15818059-15818287:+|nuORF	ENST00000396355.5_1_16:15818059-15818287:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.295166015625	2	528.29583	1054.57711	-0.88339	-0.00046669	0.1561	8.2467E-05	-0.72729	-0.00038423	528.2958939291715	45.28	0.68471	45.131	44.83	45.515	-0.1488					48	19	4	0	0	0	0.43973	1	4384	4384		63.306	3.188	1	5206600			62323	13550	43896	43958	67484	67484					0.052002438462295686
QINPCGSI	8	Unmodified	_QINPCGSI_					0	0	0			REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2481384277344	2	416.205096	830.395638	-0.37028	-0.00015411	0.89894	0.00037414	0.52866	0.00022003	416.2053619027191	36.067	0.91336	36.105	35.735	36.648	0.038044					45	25	2	0	0	0	0.027866	1	2754	2754		40.573	1.7665	1	664940	+		62324	25889	43897	43959	67485	67485					-0.026343924511593286
QINPCGSI	8	Unmodified	_QINPCGSI_					0	0	0			REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	416.205096	830.395638	0.31289	0.00013023	0.018435	7.6727E-06	0.33133	0.0001379	416.2049855659089	36.535	0.80407	36.535	36.162	36.966	0	0.20396	-0.00052735	NaN	40.573	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687270	+		62325	25889	43897	43959							-0.026343924511593286
QINPCGSI	8	Unmodified	_QINPCGSI_					0	0	0			REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	416.205096	830.395638	-0.42419	-0.00017655	0.91593	0.00038121	0.49174	0.00020466	416.20534822305297	36.396	0.92376	36.354	35.963	36.887	-0.042458	0.02254	0.00021973	NaN	40.573	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701360	+		62326	25889	43897	43959							-0.026343924511593286
QINQLAEP	8	Unmodified	_QINQLAEP_					0	0	0			REV__ENSG00000154957|ENST00000580306|ZNF18	REV__ENSG00000154957|ENST00000580306|ZNF18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.7823486328125	2	456.742899	911.471246	0.25388	0.00011596	-0.17931	-8.19E-05	0.074563	3.4056E-05	456.742641093429	49.53	0.67486	49.349	49.078	49.752	-0.18071					35	17	3	0	0	0	0.027866	1	4943	4943		50.025	0.58299	1	590670	+		62327	24984	43898	43960	67486	67486					0.011969080007474986
QINQPLYDG	9	Unmodified	_QINQPLYDG_					0	0	0			REV__ENST00000554744.1_1_14:81964730-81972475:-|nuORF	REV__ENST00000554744.1_1_14:81964730-81972475:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.79833984375	2	524.258914	1046.50327	-1.269	-0.00066529	-2.1076	-0.0011049	-3.3766	-0.0017702	524.2569747918169	39.634	0.24806	39.521	39.467	39.715	-0.11222					9	6	2	0	0	0	0.024427	1	3437	3437		34.173	15.848	1	104220	+		62328	20450	43899	43961	67487	67487					-0.018117243160986618
QINQWHYHNRV	11	Unmodified	_QINQWHYHNRV_					0	0	0		ENST00000498004.5_1_X:15706957-15739643:+|nuORF	ENST00000498004.5_1_X:15706957-15739643:+|nuORF	ENST00000498004.5_1_X:15706957-15739643:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.90191650390625	3	498.916486	1493.72763	-1.0611	-0.00052942	0.56833	0.00028355	-0.4928	-0.00024587	499.2508944481148	44.065	0.37768	43.821	43.632	44.01	-0.2444					12	9	2	0	0	0	0.024739	1	4066	4066		42.338	20.558	1	297450			62329	15609	43900	43962	67488	67488					0.0005140355772255134
QINRIPRQKKF	11	Unmodified	_QINRIPRQKKF_					0	0	0		SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|61|2|anti-sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|61|2|anti-sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|61|2|anti-sense	MSMS	OPSCC_39_ClassI_Rep-2	2	476.6229553222656	3	476.624643	1426.8521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.5	1	107.49	106.99	107.99	-0.003479								0	0	0	1.615	1	13758	13758		10.104	0.45776	1				62330	38043	43901	43963	67489	67489					0.15574901045056322
QINRKSII	8	Unmodified	_QINRKSII_					0	0	0			REV__ENSG00000004468|ENST00000226279|CD38	REV__ENSG00000004468|ENST00000226279|CD38	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3037109375	2	486.303458	970.592364	1.0621	0.00051651	-1.4419	-0.00070122	-0.37982	-0.00018471	486.3027620073508	20.166	0.72841	19.97	19.657	20.385	-0.19577					32	14	4	0	0	0	0.87148	1	523	523		53.351	5.4358	1	584810	+		62331	19778	43902	43964	67490	67490					0.10589155434081476
QINTQGPLN	9	Unmodified	_QINTQGPLN_					0	0	0			REV__MEX3D|p.T275N|1|0.07|ENSG00000181588|chr19:1556695-1556695|G/T|missense_variant	REV__MEX3D|p.T275N|1|0.07|ENSG00000181588|chr19:1556695-1556695|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.79583740234375	2	492.759081	983.503609	0.27746	0.00013672	-4.3365	-0.0021369	-4.0591	-0.0020002	492.75675794430975	48.001	1.0138	47.814	47.355	48.368	-0.18684					44	27	2	0	0	0	0.024261	1	4711	4711		45.972	19.279	1	277420	+		62332	36374	43903	43965	67491	67491					0.011196954037586693
QINTRLQQI	9	Unmodified	_QINTRLQQI_					0	0	0			REV__ENSG00000213380|ENST00000306875|COG8	REV__ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3226318359375	2	557.32238	1112.63021	-1.3961	-0.00077809	1.1378	0.00063412	-0.25832	-0.00014397	557.3229442960704	29.019	0.78116	28.774	28.448	29.229	-0.24524					50	17	4	0	0	0	0.091713	1	1759	1759		113.41	11.811	1	2284500	+		62333	28735	43904	43966	67492	67492					0.07839621628886562
QINTRLQQI	9	Unmodified	_QINTRLQQI_					0	0	0			REV__ENSG00000213380|ENST00000306875|COG8	REV__ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3221435546875	2	557.32238	1112.63021	-0.46778	-0.0002607	0.096416	5.3735E-05	-0.37136	-0.00020697	557.3223672893353	28.879	0.77945	28.71	28.424	29.203	-0.16897					50	17	4	0	0	0	0.14024	1	1734	1734		101.6	0	1	2015000	+		62334	28735	43904	43966	67493	67493					0.07839621628886562
QINVPAQFAL	10	Unmodified	_QINVPAQFAL_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7964477539062	2	550.808574	1099.60259	-0.97432	-0.00053667	2.0084	0.0011063	1.0341	0.0005696	550.8094547249113	58.052	0.50093	57.877	57.684	58.185	-0.1749					23	13	2	0	0	0	0.03519	1	6536	6536		42.396	14.514	1	1928200	+		62335	36838	43905	43967	67494	67494					0.056777183686335775
QINVRAQKV	9	Unmodified	_QINVRAQKV_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2743530273438	2	528.31964	1054.62473	-0.74848	-0.00039543	1.4621	0.00077245	0.71362	0.00037702	528.3203327271867	45.935	0.65601	45.935	45.58	46.236	0					42	18	3	0	0	0	0.024436	1	4550	4550		23.042	0	1	1798000	+		62336	37243	43906	43968	67495	67495					0.09959942837076596
QIPAAQVSL	9	Unmodified	_QIPAAQVSL_					0	0	0		ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7982482910156	2	463.768917	925.523281	0.66905	0.00031028	-0.44896	-0.00020822	0.22008	0.00010207	463.76856477842017	59.019	0.69322	59.019	58.714	59.408	0					41	18	3	0	0	0	0.024506	1	6677	6677		23.042	0	1	1405200			62337	10437	43907	43969	67496	67496					0.05754071414526152
QIPEQAEWH	9	Unmodified	_QIPEQAEWH_					0	0	0			REV__ENSG00000231389|ENST00000419277|HLA-DPA1	REV__ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2675170898438	2	569.269813	1136.52507	0.31757	0.00018078	-4.2934	-0.0024441	-3.9758	-0.0022633	569.2673127638058	23.413	2.6043	23.212	21.231	23.835	-0.20193					194	56	4	0	0	0	0.72494	1	901	901		44.377	3.8046	1	2615500	+		62338	28897	43908	43970	67497	67497					-0.037729195675410665
QIPGIVEI	8	Unmodified	_QIPGIVEI_					0	0	0		SLITRK1|p.A205V|1|0.34|ENSG00000178235|chr13:83880894-83880894|G/A|missense_variant	SLITRK1|p.A205V|1|0.34|ENSG00000178235|chr13:83880894-83880894|G/A|missense_variant	SLITRK1|p.A205V|1|0.34|ENSG00000178235|chr13:83880894-83880894|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7791748046875	2	434.760561	867.506569	-0.20937	-9.1026E-05	-2.2294	-0.00096926	-2.4388	-0.0010603	434.7593422566331	84.052	1.6629	84.052	82.965	84.628	0					83	38	4	0	0	0	0.027866	1	10422	10422		18.324	0	1	283400			62339	37900	43909	43971	67498	67498					0.06751570528570028
QIPHHRLL	8	Unmodified	_QIPHHRLL_					0	0	0			REV__chr19:56297531-56301968|496|11.07|0.34|5.04|+|1|EDDM13,EDDM13|2	REV__chr19:56297531-56301968|496|11.07|0.34|5.04|+|1|EDDM13,EDDM13|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2691955566406	2	507.303793	1012.59303	-0.63767	-0.00032349	-1.1114	-0.0005638	-1.749	-0.00088729	507.3031091634418	45.017	0.43237	44.764	44.549	44.981	-0.25252					19	9	3	0	0	0	0.027866	1	4206	4206		44.531	10.359	1	611510	+		62340	19399	43910	43972	67499	67499					0.08723994873787433
QIPIVRITL	9	Unmodified	_QIPIVRITL_					0	0	0			REV__nc|ENSG00000131095|P14136-3|GFAP	REV__nc|ENSG00000131095|P14136-3|GFAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.3146362304688	2	526.844959	1051.67537	-0.54974	-0.00028963	-0.16426	-8.6541E-05	-0.714	-0.00037617	526.844454305193	74.859	0.72295	74.859	74.509	75.232	0					28	17	2	0	0	0	0.024319	1	9136	9136		47.657	9.8458	1	150220	+		62341	36656	43911	43973	67500	67500					0.1515947216207678
QIPKKYDQP	9	Unmodified	_QIPKKYDQP_					0	0	0			REV__ENSG00000187758|ENST00000209668|ADH1A	REV__ENSG00000187758|ENST00000209668|ADH1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.73876953125	2	558.806031	1115.59751	0.21689	0.0001212	0.24704	0.00013805	0.46394	0.00025925	558.8060317349274	79.045	0.34148	78.814	78.52	78.861	-0.23141					13	7	2	0	0	0	0.024409	1	9450	9450		49.536	19.218	1	39742	+		62342	27969	43912	43974	67501	67501					0.044334145060247465
QIPKRQAE	8	Unmodified	_QIPKRQAE_					0	0	0			REV__SYCP1|p.A147P|1|0.43|ENSG00000198765|chr1:114858694-114858694|G/C|missense_variant	REV__SYCP1|p.A147P|1|0.43|ENSG00000198765|chr1:114858694-114858694|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2599182128906	2	485.277441	968.540328	-0.85807	-0.0004164	1.2528	0.00060796	0.39474	0.00019156	485.27792322364877	36.426	0.83051	36.465	36.133	36.963	0.038044					57	22	4	0	0	0	0.027866	1	2831	2831		24.203	10.066	1	2915100	+		62343	37663	43913	43975	67502	67502					0.054799920203208785
QIPLVDFQSLL	11	Unmodified	_QIPLVDFQSLL_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.9123840332031	3	424.911456	1271.71254	-0.69924	-0.00029711	3.3338	0.0014166	2.6346	0.0011195	424.91269935882156	39.082	1.2239	38.983	38.358	39.582	-0.098751					107	33	5	0	0	0	0.93575	1	3296	3296		49.466	7.1278	1	12764000			62344	3772	43914	43976	67503	67503					0.08755098917185933
QIPNNAVSL	9	Unmodified	_QIPNNAVSL_					0	0	0			REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	REV__AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3059997558594	2	478.263999	954.513445	-0.50433	-0.0002412	-2.5552	-0.001222	-3.0595	-0.0014632	478.2613671941082	23.022	0.94283	23.096	22.746	23.688	0.074261					44	21	4	0	0	0	0.023635	1	899	899		66.429	0	1	212190	+		62345	19084	43915	43977	67504	67504					0.03436883409131042
QIQDIIGR	8	Unmodified	_QIQDIIGR_					0	0	0			REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	REV__KIAA0195|p.Y1338Cfs*13|1|0.74|ENSG00000177728|chr17:75499276-75499282|ACCAGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.74835205078125	2	471.771991	941.529429	0.263	0.00012408	3.4078	0.0016077	3.6708	0.0017318	471.77170738685413	45.53	0.77655	45.574	45.279	46.056	0.043877					65	22	4	0	0	0	0.027866	1	4331	4331		24.203	0	1	2270100	+		62346	27143	43916	43978	67505	67505					0.05632589646052111
QIQDKRSKQT	10	Unmodified	_QIQDKRSKQT_					0	0	0			REV__ENSG00000119714|ENST00000650645|GPR68	REV__ENSG00000119714|ENST00000650645|GPR68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.1877746582031	3	411.229959	1230.66805	-0.1932	-7.9448E-05	-4.3705	-0.0017973	-4.5637	-0.0018767	411.2279653073931	35.553	0.95111	35.34	34.766	35.717	-0.21246					62	24	4	0	0	0	0.03519	1	2761	2761		12.957	6.9564	1	677420	+		62347	22481	43917	43979	67506	67506					0.06194087823701011
QIQEERELL	9	Unmodified	_QIQEERELL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	579.3294067382812	2	579.311677	1156.6088	-1.3399	-0.00077623	0.34876	0.00020204	-0.99117	-0.00057419	579.3121557484216	47.447	0.34425	47.447	47.216	47.56	0					12	9	2	0	0	0	0.024456	1	4737	4737		35.152	0	1	124870			62348	4266	43918	43980	67507	67507					0.03676191809518059
QIQEILTVK	9	Unmodified	_QIQEILTVK_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3244018554688	2	536.324057	1070.63356	-0.74306	-0.00039852	-0.039128	-2.0985E-05	-0.78218	-0.0004195	536.3239004118408	56.855	0.80806	56.855	56.497	57.305	0					66	22	4	0	0	0	0.16254	1	6359	6359		96.665	0	1	4708000			62349	16038	43919	43981	67508	67508					0.10106871682887686
QIQEILTVK	9	Unmodified	_QIQEILTVK_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3240356445312	2	536.324057	1070.63356	-0.85465	-0.00045837	0.032792	1.7587E-05	-0.82186	-0.00044078	536.3239072629643	56.706	0.88727	56.803	56.397	57.284	0.097893					67	24	4	0	0	0	0.038547	2	6272	6259;6272		134.77	0	1	5016100			62350	16038	43919	43981	67509;67510	67510					0.10106871682887686
QIQEQPKQQ	9	Unmodified	_QIQEQPKQQ_					0	0	0			REV__ENSG00000118960|ENST00000304031|HS1BP3	REV__ENSG00000118960|ENST00000304031|HS1BP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8326416015625	2	563.796195	1125.57784	-0.26043	-0.00014683	-3.5897	-0.0020239	-3.8501	-0.0021707	563.7941557078656	54.483	0.38778	54.333	54.12	54.507	-0.15036					18	10	2	0	0	0	0.024457	1	5897	5897		37.159	9.2769	1	314600	+		62351	22431	43920	43982	67511	67511					0.020070384952759923
QIQKKQKI	8	Unmodified	_QIQKKQKI_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.305419921875	2	507.326934	1012.63931	-0.011181	-5.6725E-06	-0.9417	-0.00047775	-0.95288	-0.00048342	507.32629310667403	41.522	1.1365	41.545	41.219	42.355	0.023003					77	32	4	0	0	0	0.027866	1	3678	3678		40.573	0	1	5001100			62352	4610	43921	43983	67512	67512					0.1335001498522388
QIQKSNKTY	9	Unmodified	_QIQKSNKTY_					0	0	0			REV__nc|ENSG00000198373|O00308-3|WWP2	REV__nc|ENSG00000198373|O00308-3|WWP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.3005981445312	2	555.301113	1108.58767	-0.76153	-0.00042288	-0.074135	-4.1167E-05	-0.83566	-0.00046405	555.3009347941696	46.485	0.87441	46.283	45.967	46.841	-0.20226					62	24	4	0	0	0	0.6504	1	4453	4453		49.442	7.0454	1	6028700	+		62353	28416	43922	43984	67513	67513					0.03772226500677789
QIQLEYRF	8	Unmodified	_QIQLEYRF_					0	0	0			REV__nc|ENSG00000292332|P26951-2|IL3RA	REV__nc|ENSG00000292332|P26951-2|IL3RA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8636474609375	2	548.792924	1095.57129	-0.081127	-4.4522E-05	0.92171	0.00050583	0.84058	0.0004613	548.7928896376606	36.753	0.39784	36.56	36.414	36.812	-0.193					15	9	2	0	0	0	0.027866	1	2893	2893		60.972	0	1	138130	+		62354	27751	43923	43985	67514	67514					0.027331453345368573
QIQLLLGF	8	Unmodified	_QIQLLLGF_					0	0	0		NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2869567871094	2	466.284203	930.553853	-0.61964	-0.00028893	1.1139	0.00051939	0.49424	0.00023046	466.28451771348625	89.644	0.47343	89.481	89.215	89.688	-0.1626					21	10	3	0	0	0	0.027866	1	10919	10919		14.664	0	1	135710			62355	5738	43924	43986	67515	67515					0.08579849799559724
QIQQKLFF	8	Unmodified	_QIQQKLFF_					0	0	0			REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF	REV__ENST00000370691.6_1_20:60885298-60889553:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7764892578125	2	526.300384	1050.58622	-0.36713	-0.00019322	-3.9483	-0.002078	-4.3154	-0.0022712	526.2976124664901	27.152	0.25933	26.996	26.758	27.018	-0.15664					7	5	2	0	0	0	0.027866	1	1434	1434		26.796	8.4717	1	39534	+		62356	31135	43925	43987	67516	67516					0.06294637202563536
QIQQYMKI	8	Unmodified	_QIQQYMKI_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.8019409179688	2	526.283877	1050.5532	-0.63772	-0.00033562	2.8745	0.0015128	2.2367	0.0011772	526.2841841367531	76.622	0.32771	76.622	76.431	76.759	0					10	7	2	0	0	0	0.027866	1	9420	9420		57.811	6.4758	1	114720			62357	8059	43926	43988	67517	67517					0.029946870881985888
QIQRLLAR	8	Unmodified	_QIQRLLAR_					0	0	0			REV__nc|ENSG00000188157|O00468-4|AGRN	REV__nc|ENSG00000188157|O00468-4|AGRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3072509765625	2	499.3169	996.619247	0.55378	0.00027651	2.0508	0.001024	2.6046	0.0013005	499.3178502936704	96.545	0.87201	96.408	96.142	97.014	-0.1367					41	19	3	0	0	0	0.027866	1	11943	11943		24.203	0	1	242190	+		62358	37039	43927	43989	67518	67518					0.12080264045266631
QIQRQAEALEL	11	Unmodified	_QIQRQAEALEL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2669372558594	3	433.573614	1297.69901	1.1315	0.00049059	0.80196	0.00034771	1.9335	0.0008383	433.5737499950618	18.085	0.34392	17.929	17.755	18.099	-0.15637					13	6	3	0	0	0	0.024792	1	275	275		13.508	1.0751	1	50402	+		62359	20232	43928	43990	67519	67519					0.062072411379631376
QIQRSLKEL	9	Unmodified	_QIQRSLKEL_					0	0	0			REV__ENSG00000111913|ENST00000643898|RIPOR2	REV__ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.8324584960938	2	557.83258	1113.65061	-0.58763	-0.0003278	-0.02238	-1.2484E-05	-0.61001	-0.00034028	557.8325850234412	22.578	1.0569	22.392	22.094	23.151	-0.18539					37	22	2	0	0	0	0.067814	2	801	792;801		122.18	9.3548	1	3405400	+		62360	21958	43929	43991	67520;67521	67521					0.09832792288693781
QIQRSLKEL	9	Unmodified	_QIQRSLKEL_					0	0	0			REV__ENSG00000111913|ENST00000643898|RIPOR2	REV__ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.8323364257812	2	557.83258	1113.65061	0.30703	0.00017127	-1.0903	-0.00060823	-0.78331	-0.00043695	557.8320062463827	22.599	1.348	22.397	21.808	23.156	-0.20198					66	28	4	0	0	0	0.043667	1	783	783		131.03	10.163	1	3005500	+		62361	21958	43929	43991	67522	67522					0.09832792288693781
QIQRTVQKM	9	Unmodified	_QIQRTVQKM_					0	0	0		ENST00000509277.5_2_4:41686526-41687780:+|nuORF	ENST00000509277.5_2_4:41686526-41687780:+|nuORF	ENST00000509277.5_2_4:41686526-41687780:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.8355712890625	2	566.318783	1130.62301	0.39157	0.00022175	-0.95904	-0.00054312	-0.56747	-0.00032137	566.3179829814984	22.018	0.76363	21.829	21.291	22.055	-0.18894					20	15	2	0	0	0	0.024344	1	724	724		45.972	16.802	1	35942			62362	15802	43930	43992	67523	67523					0.06292565756825752
QIQRVHLQGV	10	Unmodified	_QIQRVHLQGV_					0	0	0		ENST00000521369.2_1_8:107284074-107284197:+|nuORF	ENST00000521369.2_1_8:107284074-107284197:+|nuORF	ENST00000521369.2_1_8:107284074-107284197:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3441772460938	2	589.343646	1176.67274	-0.89938	-0.00053004	-0.0073699	-4.3434E-06	-0.90675	-0.00053439	589.3435287738987	95.622	0.99408	95.471	95.142	96.136	-0.15186					57	22	3	0	0	0	1.1237	1	11818	11818		23.042	0.46283	1	942320			62363	16001	43931	43993	67524	67524					0.09147016757128767
QIQSLRKE	8	Unmodified	_QIQSLRKE_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.28204345703125	2	501.290548	1000.56654	0.92952	0.00046596	-1.9862	-0.00099565	-1.0567	-0.00052969	501.288249486021	51.34	0.30566	51.229	51.169	51.475	-0.11163					14	7	2	0	0	0	0.027866	1	5273	5273		14.865	8.1293	1	136510	+		62364	23178	43932	43994	67525	67525					0.06628261191804086
QIQVREMDVL	10	Oxidation (M)	_QIQVREM(Oxidation (M))DVL_		QIQVREM(1)DVL		QIQVREM(43)DVL	0	0	1			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2205810546875	3	416.220184	1245.63872	-0.19188	-7.9863E-05	2.0276	0.00084391	1.8357	0.00076405	416.2207044267205	24.555	2.191	24.38	23.612	25.803	-0.17484					143	51	4	0	0	0	1.0236	1	1098	1098		42.864	9.8249	1	1895600	+		62365	22942	43933	43995	67526	67526		685			0.025728074831931735
QIRAGKLC	8	Unmodified	_QIRAGKLC_					0	0	0		ENSG00000177169|ENST00000321867|ULK1;ENST00000544718.1_1_12:132403795-132404230:+|nuORF;ENST00000540647.5_1_12:132402872-132405903:+|nuORF	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.22015380859375	2	444.75783	887.501106	-0.25183	-0.00011201	-0.043453	-1.9326E-05	-0.29529	-0.00013133	444.75781226417223	25.575	0.68557	25.404	25.2	25.886	-0.17151					26	16	3	0	0	0	0.027866	1	1267	1267		19.36	9.6543	1	117860			62366	8716	43934	43996	67527	67527					0.05285568465103552
QIRASRLEQI	10	Unmodified	_QIRASRLEQI_					0	0	0		nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;ENST00000593146.1_3_19:1452985-1457289:+|nuORF	nc|ENSG00000115266|O95996-3|APC2	nc|ENSG00000115266|O95996-3|APC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.23870849609375	3	405.238566	1212.69387	0.80209	0.00032504	-0.54818	-0.00022214	0.25391	0.00010289	405.23838878540363	27	1.0374	27.081	26.758	27.795	0.081293					99	27	5	0	0	0	0.65479	1	1374	1374		70.816	10.885	1	14939000			62367	3424	43935	43997	67528	67528					0.09602982065962351
QIRDPISN	8	Unmodified	_QIRDPISN_					0	0	0		nc|ENSG00000112038|P35372-6|OPRM1	nc|ENSG00000112038|P35372-6|OPRM1	nc|ENSG00000112038|P35372-6|OPRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.7772521972656	2	471.753798	941.493044	-0.35331	-0.00016667	0.57991	0.00027357	0.2266	0.0001069	471.75403184332754	29.176	1.1499	29.003	28.638	29.787	-0.17258					31	26	2	0	0	0	0.027866	1	1723	1723		30.504	0	1	165040			62368	18175	43936	43998	67529	67529					0.019957127493171356
QIREPIKSV	9	Unmodified	_QIREPIKSV_					0	0	0			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2366333007812	2	535.321848	1068.62914	-0.60092	-0.00032169	4.1201	0.0022056	3.5192	0.0018839	535.3238790853812	69.556	0.3708	69.333	69.185	69.556	-0.22245					14	8	2	0	0	0	0.024381	1	8051	8051		21.96	5.4867	1	158280	+		62369	28045	43937	43999	67530	67530					0.09757407259985484
QIREPIKSV	9	Unmodified	_QIREPIKSV_					0	0	0			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.321848	1068.62914	-0.57219	-0.00030631	3.7821	0.0020246	3.2099	0.0017183	535.3237686668685	69.432	0.38676	69.432	69.202	69.588	0	0.002118	3.7248E-05	NaN	21.96	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114970	+		62370	28045	43937	43999							0.09757407259985484
QIREPIKSV	9	Unmodified	_QIREPIKSV_					0	0	0			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.321848	1068.62914	-0.92411	-0.0004947	3.6469	0.0019523	2.7228	0.0014576	535.3237059765282	69.511	0.36553	69.526	69.388	69.754	0.015129	0.095564	-0.00010748	NaN	21.96	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106310	+		62371	28045	43937	43999							0.09757407259985484
QIREPIKSV	9	Unmodified	_QIREPIKSV_					0	0	0			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.321848	1068.62914	-0.7743	-0.0004145	4.151	0.0022221	3.3767	0.0018076	535.3240519159026	69.736	0.5845	69.469	69.247	69.831	-0.26725	0.038374	0.00043218	NaN	21.96	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110760	+		62372	28045	43937	43999							0.09757407259985484
QIRGLREEV	9	Unmodified	_QIRGLREEV_					0	0	0		ENST00000576826.1_1_16:3080380-3080641:-|nuORF;ENST00000572240.5_1_16:3080380-3081406:-|nuORF;nc|ENSG00000162069|A1A5D9-2|BICDL2;ENSG00000162069|ENST00000572449|BICDL2	ENST00000576826.1_1_16:3080380-3080641:-|nuORF	ENST00000576826.1_1_16:3080380-3080641:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.302978515625	2	550.314554	1098.61456	-0.64646	-0.00035575	0.066513	3.6603E-05	-0.57994	-0.00031915	550.314307121759	33.835	0.50272	33.835	33.626	34.129	0					18	12	2	0	0	0	0.024539	1	2444	2444		27.882	0	1	166650			62373	6917	43938	44000	67531	67531					0.06919335111842884
QIRLIQEV	8	Unmodified	_QIRLIQEV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7519836425781	2	499.803291	997.59203	-1.3945	-0.00069699	0.80553	0.00040261	-0.589	-0.00029439	499.803533883459	25.955	0.55168	25.792	25.457	26.009	-0.16331					34	14	3	0	0	0	0.027866	1	1221	1221		7.1934	0	1	630270			62374	4728	43939	44001	67532	67532					0.09313735714226823
QIRQGTLVS	9	Unmodified	_QIRQGTLVS_					0	0	0		ENST00000263697.5_1_1:28527251-28527317:-|nuORF	ENST00000263697.5_1_1:28527251-28527317:-|nuORF	ENST00000263697.5_1_1:28527251-28527317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.292236328125	2	501.290548	1000.56654	0.12039	6.035E-05	3.3244	0.0016665	3.4448	0.0017269	501.2922220994778	57.369	1.5267	57.167	56.482	58.008	-0.20209					73	40	2	0	0	0	0.19099	1	6292	6292		90.37	13.052	1	59749000			62375	11540	43940	44002	67533	67533					0.06628261191804086
QIRQGTNL	8	Unmodified	_QIRQGTNL_					0	0	0		ENST00000339438.10_1_1:115292720-115292798:-|nuORF	ENST00000339438.10_1_1:115292720-115292798:-|nuORF	ENST00000339438.10_1_1:115292720-115292798:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7823181152344	2	465.261791	928.509028	0.50116	0.00023317	2.1234	0.00098796	2.6246	0.0012211	465.2619684601185	45.644	0.34402	45.688	45.614	45.958	0.043877					14	9	2	0	0	0	0.027866	1	4435	4435		20.947	3.582	1	151480			62376	12459	43941	44003	67534	67534					0.04191418986215467
QIRRAPVI	8	Unmodified	_QIRRAPVI_					0	0	0			REV__ENSG00000151611|ENST00000649156|MMAA	REV__ENSG00000151611|ENST00000649156|MMAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.8068542480469	2	476.806168	951.597784	0.69297	0.00033041	2.4392	0.001163	3.1322	0.0014934	476.8071060785484	102.56	0.55478	102.43	102.15	102.71	-0.12931					28	12	3	0	0	0	1.0574	1	12720	12720		26.796	1.3459	1	438550	+		62377	24782	43942	44004	67535	67535					0.12004879016558334
QIRSSPLLL	9	Unmodified	_QIRSSPLLL_					0	0	0			REV__ENST00000392221.5_1_2:207024653-207024722:+|nuORF	REV__ENST00000392221.5_1_2:207024653-207024722:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8182373046875	2	513.818941	1025.62333	0.6499	0.00033393	-1.5547	-0.00079884	-0.90481	-0.00046491	513.8181162382319	72.563	1.6458	72.282	71.882	73.528	-0.28124					108	39	4	0	0	0	0.2508	2	8815	8791;8815		82.241	4.9229	1	21118000	+		62378	31597	43943	44005	67536;67537	67537					0.11154308748336916
QIRSSTTSM	9	Oxidation (M)	_QIRSSTTSM(Oxidation (M))_		QIRSSTTSM(1)		QIRSSTTSM(96)	0	0	1		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;PSMD2|p.E111Gfs*29|1|0.06|ENSG00000175166|chr3:184300417-184300418|-/GGTCCTCGGACTCCTAGGCTCAA|frameshift_variant;ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2;ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7476806640625	2	513.747856	1025.48116	2.1576	0.0011085	-2.3868	-0.0012262	-0.22911	-0.00011771	513.7464214891555	18.456	0.43925	18.456	18.235	18.674	0					21	8	3	0	0	0	0.16638	1	296	296		95.815	21.56	1	119750			62379	8534;15475	43944	44006	67538	67538		358			-0.03056272056164744
QIRSSTTSM	9	Oxidation (M)	_QIRSSTTSM(Oxidation (M))_		QIRSSTTSM(1)		QIRSSTTSM(110)	0	0	1		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;PSMD2|p.E111Gfs*29|1|0.06|ENSG00000175166|chr3:184300417-184300418|-/GGTCCTCGGACTCCTAGGCTCAA|frameshift_variant;ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2;ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7476196289062	2	513.747856	1025.48116	2.8691	0.001474	-2.8873	-0.0014833	-0.018242	-9.3718E-06	513.7462210818547	18.853	2.3512	18.916	18.452	20.803	0.063307					95	47	3	0	0	0	0.10464	3	317	269;292;317		109.48	24.318	1	180820			62380	8534;15475	43944	44006	67539;67540;67541	67541		358			-0.03056272056164744
QIRSSTTSM	9	Oxidation (M)	_QIRSSTTSM(Oxidation (M))_					0	0	1		ENSG00000175166|ENST00000310118|PSMD2;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF;PSMD2|p.E111Gfs*29|1|0.06|ENSG00000175166|chr3:184300417-184300418|-/GGTCCTCGGACTCCTAGGCTCAA|frameshift_variant;ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2;ENST00000492191.5_1_3:184017042-184018322:+|nuORF	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.747856	1025.48116	0.040701	2.091E-05	-0.39034	-0.00020053	-0.34964	-0.00017962	513.7475704008596	18.717	0.48933	18.586	18.352	18.841	-0.13147	-0.067036	0.0022346	NaN	109.48	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40948			62381	8534;15475	43944	44006				358			-0.03056272056164744
QIRYQLDS	8	Unmodified	_QIRYQLDS_					0	0	0			REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.790283203125	2	511.766906	1021.51926	-0.11288	-5.7766E-05	-0.31266	-0.00016001	-0.42553	-0.00021777	511.7671026019009	42.704	0.42666	42.591	42.464	42.891	-0.11253					21	10	3	0	0	0	0.027866	1	3894	3894		31.955	1.4512	1	79818	+		62382	35141	43945	44007	67542	67542					0.009359819208043518
QISEVRSEL	9	Unmodified	_QISEVRSEL_					0	0	0			REV__ENSG00000101132|ENST00000371419|PFDN4	REV__ENSG00000101132|ENST00000371419|PFDN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.78564453125	2	530.785296	1059.55604	-0.14922	-7.9202E-05	0.281	0.00014915	0.13178	6.9947E-05	530.7853499026376	52.841	0.89944	52.934	52.364	53.263	0.09314					58	23	4	0	0	0	0.14024	1	5623	5623		101.6	0	1	6498300	+		62383	21186	43946	44008	67543	67543					0.028642337467317702
QISGNGKL	8	Unmodified	_QISGNGKL_					0	0	0		nc|ENSG00000133195|Q8N1S5|SLC39A11;ENSG00000133195|ENST00000255559|SLC39A11;ENST00000579988.1_1_17:70643725-70721657:-|nuORF	nc|ENSG00000133195|Q8N1S5|SLC39A11	nc|ENSG00000133195|Q8N1S5|SLC39A11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5704650878906	2	408.732335	815.450116	0.12382	5.0611E-05	0.14536	5.9413E-05	0.26918	0.00011002	408.7323021872003	31.981	0.74928	31.993	31.663	32.413	0.011799					37	18	3	0	0	0	0.027866	1	2198	2198		37.159	12.956	1	424080			62384	4691	43947	44009	67544	67544					0.03500942691914588
QISIAHKEME	10	Unmodified	_QISIAHKEME_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.8323974609375	2	593.300255	1184.58596	-0.2427	-0.000144	0.72066	0.00042757	0.47796	0.00028357	593.3000861256519	75.227	0.16944	75.051	74.943	75.113	-0.17548					5	3	2	0	0	0	0.03519	1	8867	8867		32.751	6.0576	1	49843			62385	8193	43948	44010	67545	67545					0.001048494204042072
QISLAARDL	9	Unmodified	_QISLAARDL_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7655029296875	2	493.785099	985.555644	0.52047	0.000257	-1.1098	-0.00054802	-0.58936	-0.00029102	493.78442502665064	42.432	0.67172	42.432	42.187	42.859	0					29	18	2	0	0	0	0.024466	1	3868	3868		31.53	0	1	1007200	+		62386	26425	43949	44011	67546	67546					0.062288588175078985
QISLHFTV	8	Unmodified	_QISLHFTV_					0	0	0		ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	ENSG00000169508|ENST00000376414|GPR183	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77740478515625	2	472.763635	943.512717	-0.65064	-0.0003076	0.83388	0.00039423	0.18324	8.6627E-05	472.76349905178876	79.909	0.37915	79.736	79.484	79.863	-0.17226					16	8	3	0	0	0	0.027866	1	9882	9882		20.947	0	1	50814			62387	7945	43950	44012	67547	67547					0.03870088760095314
QISLNDPPI	9	Unmodified	_QISLNDPPI_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.77099609375	2	498.771657	995.528761	0.21295	0.00010622	-1.5928	-0.00079443	-1.3798	-0.00068822	498.7707660735286	104.97	1.7566	104.97	104.34	106.1	-0.0016022					133	55	5	0	0	0	0.72875	1	13427	13427		44.117	0	1	5105000	+		62388	20260	43951	44013	67548	67548					0.030817502063200664
QISRPSIIGG	10	Unmodified	_QISRPSIIGG_					0	0	0		ENST00000297107.10_1_5:153798138-153798366:+|nuORF	ENST00000297107.10_1_5:153798138-153798366:+|nuORF	ENST00000297107.10_1_5:153798138-153798366:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2986450195312	2	514.298373	1026.58219	-0.26021	-0.00013383	-0.61526	-0.00031643	-0.87547	-0.00045025	514.2978037910609	95.323	1.1741	95.171	94.667	95.842	-0.15186					65	26	4	0	0	0	1.0508	1	11727	11727		39.253	6.4404	1	1560600			62389	11858	43952	44014	67549	67549					0.0699654770885445
QISVGLILHMR	11	Unmodified	_QISVGLILHMR_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MSMS	OPSCC_40_ClassI_Rep-2	5	633.87060546875	2	633.871182	1265.72781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.015	1	94.893	94.393	95.393	-0.12251								0	0	0	1.3265	1	11728	11728		24.519	0	1		+		62390	19887	43953	44015	67550	67550					0.10557687233358592
QISVSEFIA	9	Unmodified	_QISVSEFIA_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.25579833984375	2	497.266207	992.517862	0.13502	6.7139E-05	-0.25322	-0.00012592	-0.1182	-5.8776E-05	497.265741888179	71.58	0.48607	71.318	71.033	71.52	-0.26199					17	11	2	0	0	0	0.024381	1	8390	8390		37.159	0	1	124220			62391	6342	43954	44016	67551	67551					0.021303478320419345
QITEEPAKP	9	Unmodified	_QITEEPAKP_					0	0	0			REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	REV__nc|ENSG00000168454|Q86VQ3|TXNDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	506.769114	1011.52368	0.92	0.00046623	0.27486	0.00013929	1.1949	0.00060552	507.2718584884575	59.499	0.11156	59.299	59.245	59.356	-0.20016					4	2	2	0	0	0	0.024288	1	6762	6762		29.17	0	1	31381	+		62392	36908	43955	44017	67552	67552					0.018374463437112354
QITRDHMGQL	10	Unmodified	_QITRDHMGQL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.203857421875	3	400.204757	1197.59244	-0.47048	-0.00018829	-1.1515	-0.00046084	-1.622	-0.00064913	400.2039213341699	25.548	0.86431	25.377	24.993	25.857	-0.17151					53	20	3	0	0	0	0.86089	1	1194	1194		56.632	0	1	3153800			62393	1544	43956	44018	67553	67553					0.001547873717981929
QITRLALV	8	Unmodified	_QITRLALV_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2950439453125	2	457.295102	912.575651	-0.48825	-0.00022327	0.3309	0.00015132	-0.15735	-7.1956E-05	457.2952369593063	55.851	0.91164	55.948	55.561	56.473	0.097893					69	24	4	0	0	0	0.71063	1	6139	6139		66.429	10.925	1	6402600	+		62394	21902	43957	44019	67554	67554					0.11586654548125352
QITYSLIED	9	Unmodified	_QITYSLIED_					0	0	0		nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2765502929688	2	541.274229	1080.53391	-0.57633	-0.00031195	-1.1052	-0.00059821	-1.6815	-0.00091017	541.2732701568862	61.457	0.67416	61.23	60.821	61.495	-0.22663					25	17	2	0	0	0	0.024374	1	7055	7055		49.442	10.189	1	353180			62395	10395	43958	44020	67555	67555					-0.0031399072170188447
QITYSLIED	9	Unmodified	_QITYSLIED_					0	0	0		nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.274229	1080.53391	-0.41297	-0.00022353	-2.9747	-0.0016101	-3.3876	-0.0018336	541.2726593397354	61.513	0.4166	61.299	61.042	61.458	-0.21375	0.039503	-0.0011441	NaN	49.442	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96925			62396	10395	43958	44020							-0.0031399072170188447
QITYSLIED	9	Unmodified	_QITYSLIED_					0	0	0		nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.274229	1080.53391	-1.1239	-0.00060832	-2.1697	-0.0011744	-3.2935	-0.0017827	541.7752989979381	61.425	0.3337	61.249	61.08	61.413	-0.1761	-0.010247	-0.00027266	NaN	49.442	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51759			62397	10395	43958	44020							-0.0031399072170188447
QIVDSSSSAC	10	Unmodified	_QIVDSSSSAC_					0	0	0		ENST00000323146.7_1_5:139946353-139946686:+|nuORF	ENST00000323146.7_1_5:139946353-139946686:+|nuORF	ENST00000323146.7_1_5:139946353-139946686:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7591857910156	2	498.718764	995.422975	0.16255	8.1067E-05	-2.8521	-0.0014224	-2.6895	-0.0013413	498.71716634797605	60.262	0.41018	60.262	60.027	60.437	0					14	10	2	0	0	0	0.03519	1	6945	6945		44.377	32.17	1	143150			62398	12235	43959	44021	67556	67556					-0.07491953701446619
QIVDSSSSAC	10	Unmodified	_QIVDSSSSAC_					0	0	0		ENST00000323146.7_1_5:139946353-139946686:+|nuORF	ENST00000323146.7_1_5:139946353-139946686:+|nuORF	ENST00000323146.7_1_5:139946353-139946686:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7590637207031	2	498.718764	995.422975	-1.4381	-0.00071722	-1.5955	-0.00079571	-3.0336	-0.0015129	498.7179487057491	60.09	0.45342	60.169	60.011	60.465	0.078888					18	11	2	0	0	0	0.03519	1	6832	6832		27.047	0	1	120340			62399	12235	43959	44021	67557	67557					-0.07491953701446619
QIVEFHTF	8	Unmodified	_QIVEFHTF_					0	0	0		CLCA2|p.I345F|1|0.08|ENSG00000137975|chr1:86438936-86438936|A/T|missense_variant	CLCA2|p.I345F|1|0.08|ENSG00000137975|chr1:86438936-86438936|A/T|missense_variant	CLCA2|p.I345F|1|0.08|ENSG00000137975|chr1:86438936-86438936|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.80364990234375	2	510.761092	1019.50763	0.30293	0.00015472	-2.9258	-0.0014944	-2.6229	-0.0013397	510.75892778724176	85.668	0.50613	85.473	85.215	85.721	-0.19508					16	11	2	0	0	0	0.027866	1	10341	10341		23.042	0	1	117000			62400	449	43960	44022	67558	67558					-0.001342151025255589
QIVGTPSR	8	Unmodified	_QIVGTPSR_					0	0	0		ENST00000555208.1_1_14:77796520-77797535:+|nuORF	ENST00000555208.1_1_14:77796520-77797535:+|nuORF	ENST00000555208.1_1_14:77796520-77797535:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	429.2455139160156	2	429.245609	856.476666	-0.18817	-8.077E-05	0.27807	0.00011936	0.089905	3.8591E-05	429.2455499620026	25.697	0.73933	25.525	25.118	25.857	-0.17151					35	17	3	0	0	0	0.91956	1	1219	1219		49.442	8.8689	1	564630			62401	16676	43961	44023	67559	67559					0.04268631583227034
QIVLKLSKM	9	Unmodified	_QIVLKLSKM_					0	0	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2825927734375	2	530.33337	1058.65219	-1.4548	-0.00077151	2.4592	0.0013042	1.0044	0.00053269	530.3346963018103	39.807	0.15065	39.695	39.603	39.754	-0.11223					5	3	2	0	0	0	0.024541	1	3433	3433		16.473	0.83134	1	103950	+		62402	24628	43962	44024	67560	67560					0.12520710053104267
QIVPCQYML	9	Unmodified	_QIVPCQYML_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.76904296875	2	547.772288	1093.53002	-1.4111	-0.00077299	2.1705	0.0011889	0.75933	0.00041594	547.7721801859748	83.638	0.94592	83.664	83.173	84.119	0.02655					26	21	2	0	0	0	0.024523	1	10370	10370		29.15	0	1	111930			62403	3953	43963	44025	67561	67561					-0.013000750207766032
QIVQGISTQ	9	Unmodified	_QIVQGISTQ_					0	0	0			REV__ENSG00000122970|ENST00000242591|IFT81	REV__ENSG00000122970|ENST00000242591|IFT81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2919006347656	2	487.269281	972.52401	0.29515	0.00014382	3.7881	0.0018458	4.0832	0.0019896	487.27102471698817	93.854	0.60275	93.732	93.497	94.099	-0.12215					21	13	2	0	0	0	0.024477	1	11604	11604		35.618	6.4687	1	47860	+		62404	22673	43964	44026	67562	67562					0.03664866063570571
QIVRVLLP	8	Unmodified	_QIVRVLLP_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7649230957031	2	469.313295	936.612037	1.2259	0.00057534	-1.0057	-0.000472	0.2202	0.00010334	469.3125623263669	72.43	0.73249	72.439	72.169	72.902	0.0097733					32	17	3	0	0	0	0.027866	1	8718	8718		8.2313	0	1	340910	+		62405	20301	43965	44027	67563	67563					0.14119531444839595
QIWPQPEQSI	10	Unmodified	_QIWPQPEQSI_					0	0	0			REV__ENSG00000197415|ENST00000362010|VEPH1	REV__ENSG00000197415|ENST00000362010|VEPH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.5701904296875	3	409.211906	1224.61389	0.4965	0.00020317	2.6386	0.0010797	3.1351	0.0012829	409.54672617859995	32.373	0.34526	32.373	32.186	32.531	0					9	4	3	0	0	0	0.03519	1	2238	2238		41.08	14.033	1	59911	+		62406	28301	43966	44028	67564	67564					0.010564956721282215
QIWPQPEQSI	10	Unmodified	_QIWPQPEQSI_					0	0	0			REV__ENSG00000197415|ENST00000362010|VEPH1	REV__ENSG00000197415|ENST00000362010|VEPH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	409.211906	1224.61389	0.12151	4.9725E-05	5.1339	0.0021008	5.2554	0.0021506	409.54801859719237	32.69	0.24202	32.453	32.339	32.581	-0.23666	0.039746	0.00012081	NaN	41.08	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101070	+		62407	28301	43966	44028							0.010564956721282215
QIYLIQLL	8	Unmodified	_QIYLIQLL_					0	0	0			REV__ENST00000264107.11_3_2:173370003-173370138:+|nuORF	REV__ENST00000264107.11_3_2:173370003-173370138:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.28765869140625	2	502.312961	1002.61137	0.63635	0.00031965	-0.67599	-0.00033956	-0.039644	-1.9914E-05	502.3122826913333	71.177	0.50511	71.177	70.909	71.415	0					19	12	2	0	0	0	0.027866	1	8620	8620		33.516	3.0119	1	378580	+		62408	29711	43967	44029	67565	67565					0.11016692005159712
QIYPEYLI	8	Unmodified	_QIYPEYLI_					0	0	0		nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11	nc|ENSG00000111224|Q9NR21-2|PARP11	nc|ENSG00000111224|Q9NR21-2|PARP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3111572265625	2	519.778951	1037.54335	-0.89954	-0.00046756	-1.4227	-0.00073948	-2.3222	-0.001207	519.7780281017274	53.413	1.1062	53.266	52.569	53.675	-0.14723					42	29	2	0	0	0	0.027866	1	5770	5770		31.955	0	1	668120			62409	3094	43968	44030	67566	67566					0.026078223544800494
QIYPEYLI	8	Unmodified	_QIYPEYLI_					0	0	0		nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11	nc|ENSG00000111224|Q9NR21-2|PARP11	nc|ENSG00000111224|Q9NR21-2|PARP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.778951	1037.54335	-1.0144	-0.00052727	5.6756	0.0029501	4.6612	0.0024228	519.7819753905982	53.651	0.49825	53.514	53.281	53.779	-0.13617	0.12412	0.0036913	NaN	55.504	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318840			62410	3094	43968	44030							0.026078223544800494
QIYQVESKL	9	Unmodified	_QIYQVESKL_					0	0	0			REV__ENST00000461859.1_1_1:151535003-151537177:+|nuORF	REV__ENST00000461859.1_1_1:151535003-151537177:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3057250976562	2	554.305864	1106.59717	-0.85983	-0.00047661	0.70101	0.00038857	-0.15882	-8.8034E-05	554.3061921138727	43.628	0.87193	43.628	43.15	44.022	0					77	23	4	0	0	0	0.15366	2	4096	4096;4108		98.629	13.714	1	3316800	+		62411	24233	43969	44031	67567;67568	67567					0.04813994786195508
QIYQVESKL	9	Unmodified	_QIYQVESKL_					0	0	0			REV__ENST00000461859.1_1_1:151535003-151537177:+|nuORF	REV__ENST00000461859.1_1_1:151535003-151537177:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3051147460938	2	554.305864	1106.59717	-1.1929	-0.00066126	0.99493	0.00055149	-0.19802	-0.00010976	554.3063000564559	43.868	1.0795	43.724	42.986	44.065	-0.14471					78	29	4	0	0	0	0.10174	3	4108	4108;4120;4133		110.12	19.311	1	3895200	+		62412	24233	43969	44031	67569;67570;67571	67569					0.04813994786195508
QKAAGHDLIF	10	Unmodified	_QKAAGHDLIF_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.30029296875	2	550.298373	1098.58219	0.6933	0.00038152	2.9264	0.0016104	3.6197	0.0019919	550.2997994565844	85.492	1.2648	85.342	84.787	86.052	-0.14967					56	29	3	0	0	0	0.71272	1	10363	10363		66.429	5.4573	1	537960	+		62413	19845	43970	44032	67572	67572					0.03684547708826358
QKAAGHDLIF	10	Unmodified	_QKAAGHDLIF_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	550.298373	1098.58219	0.19447	0.00010702	3.4593	0.0019036	3.6538	0.0020107	550.3001013360113	85.656	1.1148	85.461	85.088	86.202	-0.19508	0.045011	0.00020849	NaN	66.429	47	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567280	+		62414	19845	43970	44032							0.03684547708826358
QKAAGHDLIF	10	Unmodified	_QKAAGHDLIF_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	550.298373	1098.58219	0.6933	0.00038152	2.9264	0.0016104	3.6197	0.0019919	550.2997994565844	85.492	1.2648	85.342	84.787	86.052	-0.14967	-0.073618	-0.00037804	NaN	66.429	56	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537960	+		62415	19845	43970	44032							0.03684547708826358
QKAAGHDLIF	10	Unmodified	_QKAAGHDLIF_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.298373	1098.58219	0.30308	0.00016678	3.3103	0.0018216	3.6134	0.0019884	550.3000240086077	85.582	0.89264	85.444	85.113	86.006	-0.13753	0.028607	4.4486E-05	NaN	66.429	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465220	+		62416	19845	43970	44032							0.03684547708826358
QKAFALIR	8	Unmodified	_QKAFALIR_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000530363.5_1_16:81161532-81175087:-|nuORF;ENST00000533478.5_1_16:81157348-81174942:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7503356933594	2	473.795269	945.575986	0.14362	6.8045E-05	-0.51813	-0.00024549	-0.37452	-0.00017745	473.79477137627725	30.979	0.46646	30.99	30.791	31.257	0.011797					22	10	3	0	0	0	0.027866	1	2039	2039		40.573	0	1	193690			62417	18475	43971	44033	67573	67573					0.10102074267979333
QKAGKSLLF	9	Unmodified	_QKAGKSLLF_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1;nc|ENSG00000023330|P13196-2|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.6258239746094	2	496.300384	990.586216	0.20621	0.00010234	-0.5529	-0.0002744	-0.34669	-0.00017206	496.30004421630315	18.437	0.59439	18.233	18.014	18.609	-0.20371					21	11	3	0	0	0	0.024541	1	331	331		24.519	0	1	53966			62418	972	43972	44034	67574	67574					0.09054637202564209
QKAKKPPEL	9	Unmodified	_QKAKKPPEL_					0	0	0		nc|ENSG00000211710|A0A577|TRBV4-1	nc|ENSG00000211710|A0A577|TRBV4-1	nc|ENSG00000211710|A0A577|TRBV4-1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8189697265625	2	519.818941	1037.62333	0.12518	6.5073E-05	-0.67539	-0.00035108	-0.55021	-0.00028601	519.8186456583804	71.282	0.99471	71.282	70.909	71.904	0					100	25	5	0	0	0	0.29158	1	8636	8636		76.774	2.5191	1	28736000			62419	18692	43973	44035	67575	67575					0.10602308748320866
QKAKNKNK	8	Unmodified	_QKAKNKNK_					0	0	0		ENST00000392952.7_1_10:116195035-116195137:-|nuORF	ENST00000392952.7_1_10:116195035-116195137:-|nuORF	ENST00000392952.7_1_10:116195035-116195137:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.77349853515625	2	479.793258	957.571963	-0.064432	-3.0914E-05	2.0203	0.00096931	1.9558	0.0009384	479.794249276483	92.789	1.0612	92.796	92.502	93.564	0.0077286					34	24	2	0	0	0	0.027866	1	11778	11778		31.955	19.143	1	138990			62420	13433	43974	44036	67576	67576					0.0914798477426757
QKAKNKNK	8	Unmodified	_QKAKNKNK_					0	0	0		ENST00000392952.7_1_10:116195035-116195137:-|nuORF	ENST00000392952.7_1_10:116195035-116195137:-|nuORF	ENST00000392952.7_1_10:116195035-116195137:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.793258	957.571963	0.20587	9.8777E-05	1.7303	0.00083021	1.9362	0.00092898	479.7940127795688	92.784	0.59735	92.784	92.537	93.135	0	-1.3753E-05	-9.7192E-05	NaN	17.365	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165860			62421	13433	43974	44036							0.0914798477426757
QKAKNKNK	8	Unmodified	_QKAKNKNK_					0	0	0		ENST00000392952.7_1_10:116195035-116195137:-|nuORF	ENST00000392952.7_1_10:116195035-116195137:-|nuORF	ENST00000392952.7_1_10:116195035-116195137:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.793258	957.571963	-0.1883	-9.0344E-05	1.7593	0.0008441	1.571	0.00075376	479.79430960159993	92.778	0.63834	92.771	92.477	93.115	-0.0064774	-0.012574	-6.9403E-05	NaN	17.365	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112330			62422	13433	43974	44036							0.0914798477426757
QKASKNFSIT	10	Unmodified	_QKASKNFSIT_					0	0	0			REV__nc|ENSG00000211803|A0A075B6W5|TRAV23DV6	REV__nc|ENSG00000211803|A0A075B6W5|TRAV23DV6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.845703125	2	562.308938	1122.60332	-0.20533	-0.00011546	3.6413	0.0020475	3.436	0.0019321	562.3109414916147	95.126	0.69163	95.13	94.791	95.483	0.0041199					25	15	2	0	0	0	0.03519	1	12061	12061		28.081	8.978	1	446740	+		62423	37110	43975	44037	67577	67577					0.04692513017721467
QKATQTGRV	9	Unmodified	_QKATQTGRV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.781982421875	2	494.780348	987.546142	0.95416	0.0004721	1.8467	0.00091372	2.8009	0.0013858	494.78105551311484	65.894	0.93118	65.894	65.292	66.224	0					79	24	5	0	0	0	0.85329	1	7857	7857		35.618	2.1027	1	11675000			62424	876	43976	44038	67578	67578					0.05187090532001548
QKDKAKELF	9	Unmodified	_QKDKAKELF_					0	0	0			REV__ENSG00000278053|ENST00000617633|DDX52	REV__ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.814208984375	2	553.813856	1105.61316	0.52752	0.00029215	-1.9018	-0.0010532	-1.3742	-0.00076107	553.8133546303059	58.624	0.93033	58.382	58.086	59.017	-0.24165					71	22	5	0	0	0	0.18915	1	6421	6421		90.777	0.40684	1	6364900	+		62425	29212	43977	44039	67579	67579					0.06457701023077789
QKDLRKKL	8	Unmodified	_QKDLRKKL_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.8321533203125	2	514.832383	1027.65021	-0.011259	-5.7964E-06	-0.12755	-6.5666E-05	-0.13881	-7.1463E-05	514.8321902207867	18.066	0.69525	17.859	17.514	18.21	-0.20669					36	13	4	0	0	0	0.6248	1	250	250		73.975	5.1879	1	310450			62426	7462	43978	44040	67580	67580					0.13749417359508698
QKDTRLYF	8	Unmodified	_QKDTRLYF_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.8154296875	2	535.785099	1069.55564	-0.72593	-0.00038895	0.69499	0.00037236	-0.030946	-1.6581E-05	535.7854224992681	72.084	1.1538	71.878	71.42	72.574	-0.20613					57	27	4	0	0	0	0.027866	1	8373	8373		37.159	12.64	1	863580			62427	4170	43979	44041	67581	67581					0.0236485881750923
QKEAQIKVL	9	Unmodified	_QKEAQIKVL_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8079223632812	2	528.824224	1055.63389	-0.197	-0.00010418	0.1152	6.0921E-05	-0.081796	-4.3256E-05	528.824226605649	71.715	0.60321	71.715	71.301	71.904	0					26	15	2	0	0	0	0.024374	1	8682	8682		40.778	6.6056	1	318150			62428	5297	43980	44042	67582	67582					0.10830291402771763
QKEEKYIRQQK	11	Unmodified	_QKEEKYIRQQK_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.3454284667969	3	493.275568	1476.80488	1.1092	0.00054717	3.6323	0.0017917	4.7415	0.0023389	493.27736569385934	19.757	0.34543	19.524	19.374	19.72	-0.23345					11	6	2	0	0	0	0.024828	1	424	424		18.531	5.5736	1	32741			62429	9241	43981	44043	67583	67583					0.08554576983397055
QKEFAFVLY	9	Unmodified	_QKEFAFVLY_					0	0	0			REV__ENSG00000101654|ENST00000383314|RNMT	REV__ENSG00000101654|ENST00000383314|RNMT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.75439453125	2	572.8055	1143.59645	-0.23989	-0.00013741	-1.843	-0.0010557	-2.0829	-0.0011931	573.3063530205161	52.302	0.31913	52.118	52.035	52.354	-0.18404					12	7	2	0	0	0	0.024	1	5412	5412		55.504	0	1	69049	+		62430	21250	43982	44044	67584	67584					0.030392001371410515
QKEHGSDI	8	Unmodified	_QKEHGSDI_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.766845703125	2	457.222331	912.430109	-0.062463	-2.856E-05	0.39548	0.00018082	0.33302	0.00015226	457.2223839349347	23.417	0.42232	23.493	23.312	23.734	0.076241					17	9	3	0	0	0	0.027866	1	862	862		25.45	0	1	55262			62431	2308	43983	44045	67585	67585					-0.029608530387008614
QKELIRSESF	10	Unmodified	_QKELIRSESF_					0	0	0			REV__ENSG00000179213|ENST00000601727|SIGLECL1	REV__ENSG00000179213|ENST00000601727|SIGLECL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.8905029296875	3	412.890944	1235.651	0.20245	8.359E-05	-0.53854	-0.00022236	-0.33609	-0.00013877	412.8905906141695	20.71	0.97423	20.542	20.197	21.171	-0.16774					56	19	4	0	0	0	1.1081	1	638	638		31.634	1.0654	1	312100	+		62432	27246	43984	44046	67586	67586					0.04260167217898925
QKERNKVE	8	Unmodified	_QKERNKVE_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3125	2	515.78563	1029.55671	3.2233	0.0016626	4.0759	0.0021023	7.2993	0.0037649	515.787618597725	17.672	0.73774	17.672	17.349	18.087	0					23	14	3	0	0	0	0.027866	1	204	204		71.877	3.0906	1	86891			62433	10619	43985	44047	67587	67587					0.04311073186431713
QKESALNRL	9	Unmodified	_QKESALNRL_					0	0	0			REV__nc|ENSG00000007372|P26367|PAX6	REV__nc|ENSG00000007372|P26367|PAX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8010864257812	2	529.80128	1057.58801	0.36957	0.0001958	-0.75925	-0.00040225	-0.38968	-0.00020645	529.8008825330886	40.837	1.234	40.714	40.162	41.396	-0.12317					80	34	4	0	0	0	0.23085	1	3599	3599		84.916	9.8722	1	7153100	+		62434	19861	43986	44048	67588	67588					0.06151646220519069
QKETLKLLA	9	Unmodified	_QKETLKLLA_					0	0	0			REV__nc|ENSG00000132470|P16144-3|ITGB4	REV__nc|ENSG00000132470|P16144-3|ITGB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2791137695312	2	522.326599	1042.63865	-0.83043	-0.00043376	-0.097647	-5.1004E-05	-0.92808	-0.00048476	522.3265514350016	39.049	0.52554	39.049	38.797	39.323	0					27	14	3	0	0	0	0.024457	1	3298	3298		37.159	14.117	1	256900	+		62435	36661	43987	44049	67589	67589					0.11903175545535305
QKETLKLLA	9	Unmodified	_QKETLKLLA_					0	0	0			REV__nc|ENSG00000132470|P16144-3|ITGB4	REV__nc|ENSG00000132470|P16144-3|ITGB4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.326599	1042.63865	-0.78632	-0.00041072	-0.26865	-0.00014032	-1.055	-0.00055104	522.326520714636	39.065	0.46214	38.966	38.737	39.199	-0.098755	-0.085577	-0.00012997	NaN	51.335	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226640	+		62436	36661	43987	44049							0.11903175545535305
QKETLKLLA	9	Unmodified	_QKETLKLLA_					0	0	0			REV__nc|ENSG00000132470|P16144-3|ITGB4	REV__nc|ENSG00000132470|P16144-3|ITGB4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.326599	1042.63865	-0.97786	-0.00051076	0.10493	5.4806E-05	-0.87293	-0.00045595	522.3266637987149	39.204	0.4623	39.228	39.063	39.526	0.023727	0.17609	0.00026029	NaN	51.335	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271470	+		62437	36661	43987	44049							0.11903175545535305
QKEVSSLGHRQ	11	Unmodified	_QKEVSSLGHRQ_					0	0	0		ENST00000464900.5_1_X:46306754-46307940:+|nuORF	ENST00000464900.5_1_X:46306754-46307940:+|nuORF	ENST00000464900.5_1_X:46306754-46307940:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.2547607421875	3	423.561709	1267.6633	1.8374	0.00077826	2.3993	0.0010163	4.2368	0.0017945	423.5625307662612	24.9	0.69265	24.729	24.383	25.076	-0.17151					37	15	4	0	0	0	0.024726	1	1135	1135		25.892	11.806	1	193890			62438	14771	43988	44050	67590	67590					0.0401720368097358
QKEVSSLGHRQ	11	Unmodified	_QKEVSSLGHRQ_					0	0	0		ENST00000464900.5_1_X:46306754-46307940:+|nuORF	ENST00000464900.5_1_X:46306754-46307940:+|nuORF	ENST00000464900.5_1_X:46306754-46307940:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	423.561709	1267.6633	-0.26775	-0.00011341	4.5682	0.0019349	4.3004	0.0018215	423.56361451323056	25.099	0.65149	24.872	24.538	25.19	-0.22683	0.12248	0.00093444	NaN	25.892	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216010			62439	14771	43988	44050							0.0401720368097358
QKEVSSLGHRQ	11	Unmodified	_QKEVSSLGHRQ_					0	0	0		ENST00000464900.5_1_X:46306754-46307940:+|nuORF	ENST00000464900.5_1_X:46306754-46307940:+|nuORF	ENST00000464900.5_1_X:46306754-46307940:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	423.561709	1267.6633	0.0029994	1.2704E-06	4.2189	0.0017869	4.2219	0.0017882	423.5634048515175	24.822	0.61053	24.648	24.383	24.993	-0.17484	-0.10179	0.00049055	NaN	25.892	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247690			62440	14771	43988	44050							0.0401720368097358
QKFVQQLLE	9	Unmodified	_QKFVQQLLE_					0	0	0		nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.8121337890625	2	566.821681	1131.62881	-0.69718	-0.00039518	0.18777	0.00010643	-0.50941	-0.00028874	567.3232397473464	71.334	0.49406	71.345	71.05	71.544	0.010735					27	12	3	0	0	0	0.024292	1	8544	8544		58.782	10.822	1	279360			62441	1327	43989	44051	67591	67591					0.06825987540150891
QKFVQQLLE	9	Unmodified	_QKFVQQLLE_					0	0	0		nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	566.821681	1131.62881	0.23955	0.00013578	7.0183	0.0039781	7.2579	0.0041139	566.8261147876012	71.809	0.15407	71.534	71.433	71.588	-0.27509	0.17648	0.0076733	NaN	68.787	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55313			62442	1327	43989	44051							0.06825987540150891
QKGSNKVTL	9	Unmodified	_QKGSNKVTL_					0	0	0		nc|ENSG00000157827|Q96PY5|FMNL2;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7841796875	2	487.785099	973.555644	-0.43312	-0.00021127	-1.7794	-0.00086795	-2.2125	-0.0010792	487.7840806178308	85.237	0.66495	85.179	84.898	85.563	-0.057617					37	15	3	0	0	0	0.72875	1	10645	10645		44.117	1.6423	1	814530			62443	18411	43990	44052	67592	67592					0.06780858817523949
QKHLRGIS	8	Unmodified	_QKHLRGIS_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7688293457031	2	469.780151	937.545748	-0.43603	-0.00020484	0.4136	0.0001943	-0.022426	-1.0535E-05	469.78011701058006	25.538	1.2941	25.538	24.83	26.124	0					56	30	4	0	0	0	0.027866	1	1154	1154		76.847	0	1	181100	+		62444	25659	43991	44053	67593	67593					0.07447715602813787
QKIARLLQLW	10	Unmodified	_QKIARLLQLW_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.8928833007812	2	634.895515	1267.77648	-0.88559	-0.00056226	-3.9544	-0.0025106	-4.8399	-0.0030729	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.1295	1	13000	13000		27.882	3.3631	1	1402800			62445	1802	43992	44054	67594	67594					0.15329923864806005
QKIDQLSLI	9	Unmodified	_QKIDQLSLI_					0	0	0		ENSG00000157470|ENST00000288228|FAM81A	ENSG00000157470|ENST00000288228|FAM81A	ENSG00000157470|ENST00000288228|FAM81A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3165893554688	2	529.316232	1056.61791	-0.99804	-0.00052828	0.28569	0.00015122	-0.71235	-0.00037706	529.3162210973293	81.837	0.81453	81.837	81.464	82.279	0					35	19	2	0	0	0	0.39228	1	10212	10212		66.429	2.8954	1	782070			62446	6600	43993	44055	67595	67595					0.09186585165866745
QKIDQLSLI	9	Unmodified	_QKIDQLSLI_					0	0	0		ENSG00000157470|ENST00000288228|FAM81A	ENSG00000157470|ENST00000288228|FAM81A	ENSG00000157470|ENST00000288228|FAM81A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.316232	1056.61791	-0.084696	-4.4831E-05	-0.49087	-0.00025983	-0.57557	-0.00030466	529.3158255936876	81.945	0.81331	81.82	81.509	82.322	-0.12418	-0.015692	-0.00035187	NaN	66.429	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970450			62447	6600	43993	44055							0.09186585165866745
QKIDQLSLI	9	Unmodified	_QKIDQLSLI_					0	0	0		ENSG00000157470|ENST00000288228|FAM81A	ENSG00000157470|ENST00000288228|FAM81A	ENSG00000157470|ENST00000288228|FAM81A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.316232	1056.61791	-0.48858	-0.00025861	-0.18645	-9.8693E-05	-0.67503	-0.0003573	529.3159539136616	81.825	0.6939	81.851	81.495	82.189	0.025711	0.0146	-2.9602E-05	NaN	66.429	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863030			62448	6600	43993	44055							0.09186585165866745
QKIGARSTPKL	11	Unmodified	_QKIGARSTPKL_					0	0	0			REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L;REV__ENSG00000142687|ENST00000325722|KIAA0319L	REV__ENSG00000142687|ENST00000325722|KIAA0319L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8874816894531	3	400.247062	1197.71936	0.19321	7.7332E-05	-0.67758	-0.0002712	-0.48437	-0.00019387	400.24698181775096	30.613	0.54062	30.613	30.176	30.717	0					17	12	2	0	0	0	0.024768	1	1989	1989		43.419	3.3604	1	43858	+		62449	36729;24178	43994	44056	67596	67596					0.1284045658840114
QKIGARSTPKL	11	Unmodified	_QKIGARSTPKL_					0	0	0			REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L;REV__ENSG00000142687|ENST00000325722|KIAA0319L	REV__ENSG00000142687|ENST00000325722|KIAA0319L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	400.247062	1197.71936	0.086435	3.4595E-05	-0.45609	-0.00018255	-0.36965	-0.00014795	400.2469138903047	30.403	0.16512	30.412	30.331	30.496	0.0086708	0.018022	-0.004093	NaN	43.419	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20048	+		62450	36729;24178	43994	44056							0.1284045658840114
QKIGARSTPKL	11	Unmodified	_QKIGARSTPKL_					0	0	0			REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L;REV__ENSG00000142687|ENST00000325722|KIAA0319L	REV__ENSG00000142687|ENST00000325722|KIAA0319L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	400.247062	1197.71936	0.3243	0.0001298	3.2683	0.0013081	3.5926	0.0014379	400.24812833022065	30.517	0.83963	30.273	29.991	30.831	-0.24415	-0.12068	0.00037908	NaN	43.419	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99751	+		62451	36729;24178	43994	44056							0.1284045658840114
QKIGARSTPKL	11	Unmodified	_QKIGARSTPKL_					0	0	0			REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L;REV__ENSG00000142687|ENST00000325722|KIAA0319L	REV__ENSG00000142687|ENST00000325722|KIAA0319L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	400.247062	1197.71936	0.51344	0.0002055	2.8738	0.0011502	3.3873	0.0013557	400.248119918783	30.452	0.79388	30.274	29.997	30.791	-0.17817	-0.11992	-9.4628E-05	NaN	43.419	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134630	+		62452	36729;24178	43994	44056							0.1284045658840114
QKIGARSTPKL	11	Unmodified	_QKIGARSTPKL_					0	0	0			REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L;REV__ENSG00000142687|ENST00000325722|KIAA0319L	REV__ENSG00000142687|ENST00000325722|KIAA0319L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.247062	1197.71936	-0.50971	-0.00020401	3.81	0.0015249	3.3002	0.0013209	400.2484647266601	30.546	0.71019	30.397	30.099	30.809	-0.14952	0.0031067	0.0010294	NaN	43.419	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108580	+		62453	36729;24178	43994	44056							0.1284045658840114
QKIKRKKPEN	10	Unmodified	_QKIKRKKPEN_					0	0	0		ENST00000360351.8_2_2:210444452-210489846:+|nuORF;ENST00000199940.10_2_2:210372350-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	ENST00000360351.8_2_2:210444452-210489846:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	634.8933715820312	2	634.893503	1267.77245	0.41338	0.00026245	-1.871	-0.0011879	-1.4576	-0.00092541	634.8925865119255	104.35	1.0618	104.35	103.98	105.04	0					81	29	5	0	0	0	1.1265	1	13407	13407		24.519	2.5593	1	1987300			62454	12763	43995	44057	67597	67597					0.14927834371087556
QKIMYDVTE	9	Unmodified	_QKIMYDVTE_					0	0	0			REV__ENSG00000169914|ENST00000375120|OTUD3	REV__ENSG00000169914|ENST00000375120|OTUD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8324584960938	2	563.776082	1125.53761	-0.42532	-0.00023978	-4.4095	-0.002486	-4.8348	-0.0027257	563.7734266009229	53.843	0.45098	53.94	53.773	54.223	0.096897					22	12	3	0	0	0	0.024381	1	5815	5815		29.15	0	1	279640	+		62455	26416	43996	44058	67598	67598					-0.020136442195280324
QKIQQKPQI	9	Unmodified	_QKIQQKPQI_					0	0	0		ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.8375244140625	2	555.835123	1109.65569	0.92917	0.00051647	4.1512	0.0023074	5.0803	0.0028238	555.8367682143568	106.52	0.46851	106.52	106.25	106.72	0					29	14	3	0	0	0	0.98128	1	13672	13672		24.203	3.2558	1	93013			62456	11336	43997	44059	67599	67599					0.10525096151332036
QKISKLDTLSF	11	Unmodified	_QKISKLDTLSF_					0	0	0			REV__ENSG00000121749|ENST00000485960|TBC1D15	REV__ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.368896484375	2	640.366453	1278.71835	1.4321	0.0009171	2.1892	0.0014019	3.6214	0.002319	640.3678338904888	17.252	0.29872	17.109	16.977	17.276	-0.14278					11	6	3	0	0	0	1.0483	1	139	139		25.574	4.6271	1	56896	+		62457	22605	43998	44060	67600	67600					0.09014197428837178
QKISKLDTLSF	11	Unmodified	_QKISKLDTLSF_					0	0	0			REV__ENSG00000121749|ENST00000485960|TBC1D15	REV__ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	640.366453	1278.71835	1.4321	0.0009171	2.1892	0.0014019	3.6214	0.002319	640.3678338904888	17.252	0.29872	17.109	16.977	17.276	-0.14278	-0.024387	0.0021575	NaN	25.574	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56896	+		62458	22605	43998	44060							0.09014197428837178
QKISWAWWH	9	Unmodified	_QKISWAWWH_					0	0	0		ENST00000442007.1_1_6:73985509-73985899:+|nuORF	ENST00000442007.1_1_6:73985509-73985899:+|nuORF	ENST00000442007.1_1_6:73985509-73985899:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.25872802734375	3	414.545331	1240.61416	0.13446	5.5742E-05	-3.3049	-0.00137	-3.1705	-0.0013143	414.8782962392812	38.855	0.17915	38.63	38.523	38.702	-0.2257					6	4	2	0	0	0	0.024438	1	3213	3213		36.447	0.12911	1	40312			62459	14373	43999	44061	67601	67601					0.0034796018264842132
QKIVEVSSA	9	Unmodified	_QKIVEVSSA_					0	0	0			REV__SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	REV__SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.8007507324219	2	480.771657	959.528761	0.38004	0.00018271	1.0775	0.00051805	1.4576	0.00070076	480.76992648236103	94.316	0.31598	94.316	94.128	94.444	0					12	7	2	0	0	0	0.024381	1	12003	12003		45.952	0	1	63919	+		62460	25077	44000	44062	67602	67602					0.047377502063341126
QKIVSSLY	8	Unmodified	_QKIVSSLY_					0	0	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	469.7328186035156	2	469.271293	936.528032	-0.48258	-0.00022646	0.48691	0.00022849	0.0043274	2.0307E-06	469.2713792500743	27.652	0.61414	27.496	27.266	27.88	-0.15664					23	14	3	0	0	0	0.027866	1	1524	1524		37.159	1.5408	1	275730	+		62461	26507	44001	44063	67603	67603					0.05722955557280329
QKIVSSLY	8	Unmodified	_QKIVSSLY_					0	0	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.271293	936.528032	-0.02215	-1.0394E-05	-0.13087	-6.1413E-05	-0.15302	-7.1808E-05	469.2711459677144	27.715	0.63559	27.473	27.249	27.885	-0.24217	0.016336	-0.00036613	NaN	37.159	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224930	+		62462	26507	44001	44063							0.05722955557280329
QKIVSSLY	8	Unmodified	_QKIVSSLY_					0	0	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.271293	936.528032	-0.58529	-0.00027466	0.60351	0.00028321	0.018214	8.5471E-06	469.27140820023453	27.57	0.8763	27.402	26.931	27.808	-0.16816	-0.055186	0.00032312	NaN	37.159	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244820	+		62463	26507	44001	44063							0.05722955557280329
QKIYFENES	9	Unmodified	_QKIYFENES_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.306640625	2	579.277303	1156.54005	-0.16494	-9.5548E-05	-2.4105	-0.0013963	-2.5754	-0.0014919	579.2757891986629	41.807	0.46994	41.684	41.491	41.961	-0.12299					26	12	3	0	0	0	0.024457	1	3716	3716		21.96	0	1	515270	+		62464	23051	44002	44064	67604	67604					-0.0319547249016523
QKKEKSFI	8	Unmodified	_QKKEKSFI_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.2974548339844	2	504.297842	1006.58113	0.374	0.00018861	-1.2713	-0.0006411	-0.89728	-0.00045249	504.2971125789894	21.509	1.138	21.332	21.065	22.203	-0.17721					59	23	5	0	0	0	0.6248	3	683	671;683;694		73.975	18.471	1	2221300	+		62465	23691	44003	44065	67605;67606;67607	67606					0.07810333339955378
QKKEKSFI	8	Unmodified	_QKKEKSFI_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2973937988281	2	504.297842	1006.58113	-0.1409	-7.1056E-05	-0.60049	-0.00030283	-0.74139	-0.00037388	504.29746517008283	21.629	1.2364	21.438	21.128	22.364	-0.19072					59	25	5	0	0	0	0.56592	1	681	681		79.451	8.1553	1	1707700	+		62466	23691	44003	44065	67608	67608					0.07810333339955378
QKKEKSFI	8	Unmodified	_QKKEKSFI_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2973327636719	2	504.297842	1006.58113	-1.3773	-0.00069455	0.47891	0.00024151	-0.89835	-0.00045304	504.2979566664299	21.608	1.2011	21.395	21.118	22.319	-0.2128					59	24	5	0	0	0	0.50239	2	663	652;663		85.359	7.6205	1	2079500	+		62467	23691	44003	44065	67609;67610	67610					0.07810333339955378
QKKEKSFI	8	Unmodified	_QKKEKSFI_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	504.297842	1006.58113	-1.3773	-0.00069455	0.47891	0.00024151	-0.89835	-0.00045304	504.2979566664299	21.608	1.2011	21.395	21.118	22.319	-0.2128	0.0063857	0.0010648	NaN	85.359	59	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2079500	+		62468	23691	44003	44065							0.07810333339955378
QKKFGPVVAPK	11	Unmodified	_QKKFGPVVAPK_					0	0	0		ENSG00000159840|ENST00000322764|ZYX;ENST00000468083.1_1_7:143078664-143079645:+|nuORF	ENSG00000159840|ENST00000322764|ZYX	ENSG00000159840|ENST00000322764|ZYX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.23046875	3	400.248403	1197.72338	0.82064	0.00032846	-0.77157	-0.00030882	0.049071	1.964E-05	400.2489143984829	22.069	0.33259	22.069	21.819	22.152	0					12	6	3	0	0	0	0.024734	1	743	743		34.087	14.056	1	23651			62469	6770	44004	44066	67611	67611					0.13242546082119588
QKKGRKQV	8	Unmodified	_QKKGRKQV_					0	0	0			REV__ENSG00000148291|ENST00000371964|SURF2	REV__ENSG00000148291|ENST00000371964|SURF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7692565917969	2	486.309075	970.603597	-1.1168	-0.00054312	0.51429	0.00025011	-0.60253	-0.00029302	486.3092469418298	20.397	1.0689	20.397	19.979	21.048	0					49	21	4	0	0	0	0.027866	1	567	567		31.955	7.7521	1	1004000	+		62470	24603	44005	44067	67612	67612					0.11711977528227635
QKKKKPNL	8	Unmodified	_QKKKKPNL_					0	0	0			REV__ENSG00000109501|ENST00000226760|WFS1	REV__ENSG00000109501|ENST00000226760|WFS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2725830078125	2	492.321651	982.62875	-0.43134	-0.00021236	0.32139	0.00015823	-0.10995	-5.413E-05	492.3218895399251	23.548	0.25648	23.624	23.434	23.69	0.076241					8	5	2	0	0	0	0.027866	1	904	904		40.573	8.6178	1	18727	+		62471	21797	44006	44068	67613	67613					0.136740323308004
QKKLEVLTK	9	Unmodified	_QKKLEVLTK_					0	0	0		ENSG00000083535|ENST00000326291|PIBF1	ENSG00000083535|ENST00000326291|PIBF1	ENSG00000083535|ENST00000326291|PIBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.84716796875	2	543.847699	1085.68084	-0.11751	-6.3907E-05	-0.39927	-0.00021714	-0.51678	-0.00028105	543.8473957035973	20.955	0.67743	20.778	20.484	21.162	-0.17721					37	13	4	0	0	0	0.77768	1	626	626		40.778	0	1	723330			62472	1754	44007	44069	67614	67614					0.14143150953873374
QKKRKISK	8	Unmodified	_QKKRKISK_					0	0	0		WDR72|p.M772R|1|0.42|ENSG00000166415|chr15:53615891-53615891|A/C|missense_variant	WDR72|p.M772R|1|0.42|ENSG00000166415|chr15:53615891-53615891|A/C|missense_variant	WDR72|p.M772R|1|0.42|ENSG00000166415|chr15:53615891-53615891|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8368835449219	2	508.340375	1014.6662	-0.32384	-0.00016462	-2.985	-0.0015174	-3.3088	-0.001682	508.3388384710054	17.645	0.59726	17.439	17.265	17.863	-0.20669					21	11	2	0	0	0	0.027866	1	208	208		21.96	0	1	184020			62473	38152	44008	44070	67615	67615					0.15945123596418398
QKKRRVEEKGR	11	Unmodified	_QKKRRVEEKGR_					0	0	0			REV__ENST00000552269.5_1_12:47604503-47610169:-|nuORF	REV__ENST00000552269.5_1_12:47604503-47610169:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.9518127441406	3	471.951419	1412.83243	0.17943	8.4684E-05	0.27602	0.00013027	0.45545	0.00021495	471.95164307474545	104.46	0.54167	104.3	104.05	104.59	-0.16791					45	14	4	0	0	0	1.0921	1	12988	12988		13.508	0	1	303920	+		62474	34947	44009	44071	67616	67616					0.14252525034294194
QKKTIFMW	8	Unmodified	_QKKTIFMW_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2960205078125	2	541.296788	1080.57902	-0.91338	-0.00049441	-3.1662	-0.0017138	-4.0796	-0.0022083	541.2950672829442	98.466	0.93079	98.3	97.967	98.898	-0.16521					49	21	3	0	0	0	0.59392	1	12201	12201		76.847	28.931	1	306310	+		62475	19268	44010	44072	67617	67617					0.041955813305094125
QKKYYEQQL	9	Unmodified	_QKKYYEQQL_					0	0	0			REV__nc|ENSG00000137166|Q8IVH2-2|FOXP4	REV__nc|ENSG00000137166|Q8IVH2-2|FOXP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5704650878906	3	409.883789	1226.62954	0.03564	1.4608E-05	4.0023	0.0016405	4.038	0.0016551	410.2192497529498	32.247	0.41942	32.258	32.104	32.523	0.011799					12	9	2	0	0	0	0.024438	1	2198	2198		36.447	8.3653	1	42881	+		62476	36699	44011	44073	67618	67618					0.025287821891879503
QKLATFLKN	9	Unmodified	_QKLATFLKN_					0	0	0		ENSG00000173212|ENST00000369500|MAB21L3	ENSG00000173212|ENST00000369500|MAB21L3	ENSG00000173212|ENST00000369500|MAB21L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8167114257812	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.98697	1	10833	10833		23.042	0	1	4521600			62477	8354	44012	44074	67619	67619					0.09498308748334239
QKLDEKSVK	9	Unmodified	_QKLDEKSVK_					0	0	0			REV__ENSG00000114124|ENST00000682958|GRK7	REV__ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.8115844726562	2	537.811313	1073.60807	-0.58226	-0.00031314	0.18769	0.00010094	-0.39457	-0.0002122	537.8113140892102	19.342	0.63838	19.223	18.953	19.591	-0.11872					35	12	5	0	0	0	0.48817	1	391	391		60.118	3.6845	1	329730	+		62478	22107	44013	44075	67620	67620					0.07421397160487686
QKLEAHRGE	9	Unmodified	_QKLEAHRGE_					0	0	0		ENSG00000176438|ENST00000682763|SYNE3;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENST00000555759.1_1_14:95904955-95916441:-|nuORF	ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95904955-95916441:-|nuORF	ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.75927734375	2	534.283254	1066.55196	-0.84226	-0.00045001	-1.5873	-0.00084806	-2.4296	-0.0012981	534.2823134761816	72.701	0.42357	72.503	72.33	72.753	-0.19811					14	9	2	0	0	0	0.0242	1	8536	8536		60.118	29.615	1	114090			62479	8640;16690	44014	44076	67621	67621					0.021341890436588073
QKLIKKDAE	9	Unmodified	_QKLIKKDAE_					0	0	0			REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7974243164062	2	536.821681	1071.62881	-1.0417	-0.00055923	0.3121	0.00016754	-0.72965	-0.00039169	536.8213645198648	66.381	0.42026	66.136	65.931	66.351	-0.24517					17	10	2	0	0	0	0.024418	1	7606	7606		54.776	16.965	1	277100	+		62480	29051	44015	44077	67622	67622					0.09585987540140195
QKLIKPPAPT	10	Unmodified	_QKLIKPPAPT_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3200073242188	2	546.842416	1091.67028	0.40685	0.00022248	-3.6545	-0.0019985	-3.2477	-0.001776	546.8403039792777	19.083	0.24618	18.88	18.757	19.004	-0.20371					7	4	2	0	0	0	0.03519	1	377	377		44.377	0	1	25221			62481	4246	44016	44078	67623	67623					0.12811168299458586
QKLKDKEVA	9	Unmodified	_QKLKDKEVA_					0	0	0		ENST00000421606.6_2_16:55801397-55827869:+|nuORF;nc|ENSG00000198848|P23141-3|CES1;nc|ENSG00000198848|P23141|CES1;ENSG00000198848|ENST00000360526|CES1	ENST00000421606.6_2_16:55801397-55827869:+|nuORF	ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7928466796875	2	529.813856	1057.61316	-0.53615	-0.00028406	-0.01887	-9.9978E-06	-0.55502	-0.00029406	529.8133210743158	24.419	0.42139	24.244	24.089	24.511	-0.17484					15	9	2	0	0	0	0.024436	1	1081	1081		30.504	2.6214	1	51790			62482	13995	44017	44079	67624	67624					0.0866570102307378
QKLKKLPPGG	10	Unmodified	_QKLKKLPPGG_					0	0	0			REV__nc|ENSG00000166886|Q15742-3|NAB2	REV__nc|ENSG00000166886|Q15742-3|NAB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3402099609375	2	533.342584	1064.67061	-0.51819	-0.00027637	-3.9938	-0.0021301	-4.512	-0.0024065	533.3403481687069	97.908	0.97088	97.908	97.549	98.52	0					61	22	4	0	0	0	1.0541	1	12521	12521		38.806	3.1879	1	1189600	+		62483	26072	44018	44080	67625	67625					0.1408658801931324
QKLKQQAP	8	Unmodified	_QKLKQQAP_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.32879638671875	2	470.782359	939.550165	0.70291	0.00033092	-0.9707	-0.00045699	-0.26779	-0.00012607	470.781753646068	19.006	0.39514	18.845	18.589	18.984	-0.16079					16	7	3	0	0	0	0.027866	1	348	348		20.482	0	1	140210	+		62484	24262	44019	44081	67626	67626					0.0779718002570462
QKLKQQAP	8	Unmodified	_QKLKQQAP_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.782359	939.550165	0.70251	0.00033073	-1.0505	-0.00049456	-0.34799	-0.00016383	470.7817945873152	19.04	0.5437	18.836	18.658	19.202	-0.20371	0.0074519	0.00044893	NaN	20.482	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182670	+		62485	24262	44019	44081							0.0779718002570462
QKLLAGLIL	9	Unmodified	_QKLLAGLIL_					0	0	0		ENSG00000147437|ENST00000421054|GNRH1	ENSG00000147437|ENST00000421054|GNRH1	ENSG00000147437|ENST00000421054|GNRH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.78729248046875	2	484.828778	967.643003	-0.58667	-0.00028444	-0.060292	-2.9231E-05	-0.64697	-0.00031367	484.8287746484547	44.733	0.59354	44.77	44.509	45.103	0.036903					36	16	3	0	0	0	0.024262	1	4280	4280		47.916	12.297	1	437730			62486	5967	44020	44082	67627	67627					0.1578868475909303
QKLLDLSTE	9	Unmodified	_QKLLDLSTE_					0	0	0		BICD2-IPPK|1|fusion;ENSG00000127080|ENST00000287996|IPPK	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.267822265625	2	523.790047	1045.56554	0.097543	5.1092E-05	0.34895	0.00018278	0.4465	0.00023387	523.7901094635162	43.544	0.47225	43.575	43.34	43.812	0.030827					20	12	2	0	0	0	0.024263	1	4008	4008		42.396	0	1	360690			62487	185	44021	44083	67628	67628					0.04458002032242803
QKLLEDPVLAL	11	Unmodified	_QKLLEDPVLAL_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8695068359375	2	619.871371	1237.72819	-1.0156	-0.00062956	-2.1325	-0.0013219	-3.1482	-0.0019515	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.0483	1	11875	11875		25.574	1.3713	1	4459000	+		62488	20764	44022	44084	67629	67629					0.11883385434225602
QKLLEDPVLAL	11	Unmodified	_QKLLEDPVLAL_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8694458007812	2	619.871371	1237.72819	-0.66003	-0.00040914	-2.4762	-0.001535	-3.1363	-0.0019441	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	0.98218	1	11649	11649		40.778	2.9666	1	5229800	+		62489	20764	44022	44084	67630	67630					0.11883385434225602
QKLLEDPVLAL	11	Unmodified	_QKLLEDPVLAL_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8695068359375	2	619.871371	1237.72819	-0.47108	-0.00029201	-2.6122	-0.0016192	-3.0832	-0.0019112	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.018	1	11679	11679		32.812	1.2826	1	4765600	+		62490	20764	44022	44084	67631	67631					0.11883385434225602
QKLLLSEL	8	Unmodified	_QKLLLSEL_					0	0	0		nc|ENSG00000140481|Q8N5R6-4|CCDC33;nc|ENSG00000140481|Q8N5R6-5|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2962341308594	2	472.294768	942.574983	0.91524	0.00043226	-0.55105	-0.00026026	0.36419	0.00017201	472.294046915023	55.133	0.84678	55.133	54.689	55.536	0					62	23	5	0	0	0	0.30053	1	6071	6071		111.65	0	1	3525900			62491	5417	44023	44085	67632	67632					0.10139815108414041
QKLLLSEL	8	Unmodified	_QKLLLSEL_					0	0	0		nc|ENSG00000140481|Q8N5R6-4|CCDC33;nc|ENSG00000140481|Q8N5R6-5|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.296142578125	2	472.294768	942.574983	-0.26182	-0.00012365	-2.3004	-0.0010865	-2.5622	-0.0012101	472.295419182812	54.997	1.1824	55.095	54.525	55.707	0.098015					76	32	4	0	0	0	0.56592	1	5960	5960		79.451	0	1	3588300			62492	5417	44023	44085	67633	67633					0.10139815108414041
QKLLQEKR	8	Unmodified	_QKLLQEKR_					0	0	0		nc|ENSG00000162949|Q6MZZ7-2|CAPN13;ENSG00000162949|ENST00000295055|CAPN13	nc|ENSG00000162949|Q6MZZ7-2|CAPN13	nc|ENSG00000162949|Q6MZZ7-2|CAPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.305419921875	2	521.822015	1041.62948	-0.59739	-0.00031173	-0.85281	-0.00044501	-1.4502	-0.00075674	521.8208101419698	47.093	0.24866	47.093	47.003	47.252	0					9	6	2	0	0	0	0.027866	1	4705	4705		33.516	0	1	491010			62493	7017	44024	44086	67634	67634					0.11032826979840138
QKLLWLLY	8	Unmodified	_QKLLWLLY_					0	0	0		nc|ENSG00000133895|O00255-1|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-1|MEN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7922973632812	2	538.828778	1075.643	-0.0035396	-1.9072E-06	0.33582	0.00018095	0.33228	0.00017904	538.8287149194829	78.521	0.61835	78.329	78.056	78.674	-0.1921					21	14	2	0	0	0	0.027866	1	9693	9693		52.299	6.3269	1	121370			62494	4739	44025	44087	67635	67635					0.10820684759096366
QKLLWLLY	8	Unmodified	_QKLLWLLY_					0	0	0		nc|ENSG00000133895|O00255-1|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-1|MEN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7926025390625	2	538.828778	1075.643	-0.92619	-0.00049906	0.55726	0.00030027	-0.36893	-0.00019879	538.8286625339789	78.452	0.70523	78.468	78.195	78.9	0.015907					21	16	2	0	0	0	0.027866	1	9634	9634		40.573	7.7602	1	115570			62495	4739	44025	44087	67636	67636					0.10820684759096366
QKLLWLLY	8	Unmodified	_QKLLWLLY_					0	0	0		nc|ENSG00000133895|O00255-1|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-1|MEN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7923583984375	2	538.828778	1075.643	-0.45273	-0.00024394	0.1467	7.9048E-05	-0.30603	-0.0001649	538.8286625696023	78.487	0.60211	78.233	77.998	78.6	-0.25471					18	13	2	0	0	0	0.027866	1	9337	9337		42.474	19.432	1	113550			62496	4739	44025	44087	67637	67637					0.10820684759096366
QKLLWLLY	8	Unmodified	_QKLLWLLY_					0	0	0		nc|ENSG00000133895|O00255-1|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-1|MEN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.7925415039062	2	538.828778	1075.643	0.026145	1.4087E-05	-2.3983	-0.0012923	-2.3721	-0.0012782	538.8282195820368	78.375	0.4262	78.144	77.963	78.389	-0.23141					22	9	3	0	0	0	0.027866	1	9345	9345		42.474	5.3154	1	111800			62497	4739	44025	44087	67638	67638					0.10820684759096366
QKLNTLVAQN	10	Unmodified	_QKLNTLVAQN_					0	0	0			REV__nc|ENSG00000197620|Q8TE69-2|EOLA1	REV__nc|ENSG00000197620|Q8TE69-2|EOLA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.8324584960938	2	564.822212	1127.62987	-0.75299	-0.00042531	0.88169	0.000498	0.1287	7.2691E-05	564.8225159665726	54.239	0.24921	54.239	54.144	54.393	0					9	6	2	0	0	0	0.03519	1	5909	5909		44.377	7.2181	1	107680	+		62498	28331	44026	44088	67639	67639					0.07116201909047959
QKLRWYFK	8	Unmodified	_QKLRWYFK_					0	0	0		ENSG00000048545|ENST00000372958|GUCA1A	ENSG00000048545|ENST00000372958|GUCA1A	ENSG00000048545|ENST00000372958|GUCA1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.803466796875	2	584.834926	1167.6553	-0.78197	-0.00045733	-1.0127	-0.00059228	-1.7947	-0.0010496	584.8346693462939	53.602	0.14642	53.405	53.275	53.422	-0.19739					5	3	2	0	0	0	0.027866	1	5601	5601		28.254	0	1	725270			62499	1117	44027	44089	67640	67640					0.07817721222113505
QKLTKSVL	8	Unmodified	_QKLTKSVL_					0	0	0			REV__MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|5|1|sense	REV__MLT1C_dup7742|chr7:13103710-13104173:+|1.906609052315356|0.0430416878633181|5.47|504.0|5|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.76397705078125	2	458.794935	915.575317	0.19562	8.9752E-05	-0.98146	-0.00045029	-0.78584	-0.00036054	458.79421527990087	24.093	0.77494	23.878	23.224	23.999	-0.2151					19	17	2	0	0	0	0.027866	1	976	976		85.359	32.008	1	52857	+		62500	36385	44028	44090	67641	67641					0.11415234828291432
QKMLQLCEP	9	Unmodified	_QKMLQLCEP_					0	0	0			REV__ENSG00000101890|ENST00000218006|GUCY2F	REV__ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2756958007812	2	545.275195	1088.53584	-0.48422	-0.00026403	-1.2153	-0.00066267	-1.6995	-0.0009267	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.67687	1	9759	9759		47.657	1.7054	1	63206000	+		62501	21263	44029	44091	67642	67642					-0.004889765091093068
QKMMMKRSYEY	11	Unmodified	_QKMMMKRSYEY_					0	0	0			REV__ENSG00000120329|ENST00000239451|SLC25A2	REV__ENSG00000120329|ENST00000239451|SLC25A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.90191650390625	3	498.90158	1493.68291	-1.0393	-0.00051853	0.8932	0.00044562	-0.14614	-7.291E-05	498.9022750941557	44.094	1.3537	43.85	43.52	44.873	-0.2444					133	35	6	0	0	0	1.044	1	4066	4066		26.75	0	1	20973000	+		62502	22527	44030	44092	67643	67643					-0.04418247686430732
QKMPLIGLG	9	Unmodified	_QKMPLIGLG_					0	0	0		ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	ENSG00000117448|ENST00000351829|AKR1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2815246582031	2	478.783513	955.552473	0.21066	0.00010086	3.5354	0.0016927	3.7461	0.0017935	478.78402068689434	50.756	0.40063	50.607	50.256	50.657	-0.14915					27	11	3	0	0	0	0.024443	1	5308	5308		35.201	9.7505	1	2581400			62503	3628	44031	44093	67644	67644					0.07291892439161529
QKNIIFATGI	10	Unmodified	_QKNIIFATGI_					0	0	0		nc|ENSG00000196678|A8K979-4|ERI2;ENST00000567859.5_1_16:20812516-20814833:-|nuORF;nc|ENSG00000196678|A8K979-3|ERI2;nc|ENSG00000196678|A8K979-2|ERI2;ENSG00000196678|ENST00000357967|ERI2	nc|ENSG00000196678|A8K979-4|ERI2	nc|ENSG00000196678|A8K979-4|ERI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7665405273438	2	552.824224	1103.63389	-0.59515	-0.00032901	0.31655	0.000175	-0.2786	-0.00015402	552.8243259125163	61.454	0.53609	61.196	60.927	61.464	-0.25725					21	12	2	0	0	0	0.03519	1	6878	6878		31.53	11.533	1	628080			62504	18630	44032	44094	67645	67645					0.08622291402753035
QKNKQRNE	8	Unmodified	_QKNKQRNE_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant;NSD1|p.L590Ifs*5|1|0.48|ENSG00000165671|chr5:177210166-177210167|TT/-|frameshift_variant;NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant;ENST00000602285.1_1_5:176562104-176563088:+|nuORF	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.7792358398438	2	522.780879	1043.5472	0.6715	0.00035105	2.2012	0.0011508	2.8727	0.0015018	522.7818162632987	78.254	0.53371	78.062	77.723	78.257	-0.19211					18	12	2	0	0	0	0.027866	1	9642	9642		38.806	3.6054	1	101590			62505	7449	44033	44095	67646	67646					0.027173049009206807
QKNLPYTLL	9	Unmodified	_QKNLPYTLL_					0	0	0		ENST00000203630.9_2_12:6857197-6857296:-|nuORF	ENST00000203630.9_2_12:6857197-6857296:-|nuORF	ENST00000203630.9_2_12:6857197-6857296:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165283203125	2	545.318774	1088.623	-0.30487	-0.00016625	-3.6769	-0.0020051	-3.9817	-0.0021713	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.75397	1	10783	10783		42.396	1.618	1	3635800			62506	11132	44034	44096	67647	67647					0.08222889028479585
QKNNALKKI	9	Unmodified	_QKNNALKKI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8053588867188	2	528.82984	1055.64513	-0.11643	-6.1572E-05	3.3172	0.0017543	3.2008	0.0016927	528.8313038987317	81.659	0.46567	81.466	81.295	81.76	-0.19334					17	10	2	0	0	0	0.024477	1	9805	9805		44.117	10.601	1	68572			62507	4704	44035	44097	67648	67648					0.11953113496883816
QKNNALKKI	9	Unmodified	_QKNNALKKI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.82984	1055.64513	0.16916	8.9455E-05	3.5935	0.0019003	3.7626	0.0019898	528.8315248691353	81.694	0.58833	81.465	81.188	81.777	-0.2289	-0.022918	0.0001002	NaN	51.335	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93172			62508	4704	44035	44097							0.11953113496883816
QKNNALKKI	9	Unmodified	_QKNNALKKI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.82984	1055.64513	-0.56406	-0.00029829	3.7812	0.0019996	3.2172	0.0017013	528.8316187554816	81.675	0.54983	81.533	81.275	81.824	-0.14249	0.045143	0.00029879	NaN	51.335	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64569			62509	4704	44035	44097							0.11953113496883816
QKNWENHRL	9	Unmodified	_QKNWENHRL_					0	0	0		ENST00000489672.5_1_7:64363695-64377454:+|nuORF	ENST00000489672.5_1_7:64363695-64377454:+|nuORF	ENST00000489672.5_1_7:64363695-64377454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5704650878906	3	408.879261	1223.61595	0.06345	2.5944E-05	0.030637	1.2527E-05	0.094087	3.847E-05	408.8789651662152	32.245	0.27479	32.257	32.063	32.338	0.011795					10	6	2	0	0	0	0.024389	1	2198	2198		35.152	5.982	1	74364			62510	15416	44036	44098	67649	67649					0.013089692006133191
QKPAATLS	8	Unmodified	_QKPAATLS_					0	0	0		ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2299499511719	2	408.23471	814.454868	-0.59626	-0.00024341	2.0378	0.0008319	1.4416	0.00058849	408.2351717305438	24.973	0.47406	24.939	24.727	25.201	-0.034397					20	10	3	0	0	0	0.027866	1	1125	1125		30.504	2.6214	1	195310			62511	2552	44037	44099	67650	67650					0.04021826834662079
QKPHLKLAR	9	Unmodified	_QKPHLKLAR_					0	0	0		nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	nc|ENSG00000171681|Q6VMQ6-5|ATF7IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3026123046875	2	545.845825	1089.6771	-0.34956	-0.0001908	2.6334	0.0014375	2.2839	0.0012467	545.8471602432411	63.759	0.58062	63.531	63.328	63.908	-0.22773					22	14	2	0	0	0	0.024477	1	7185	7185		20.947	0	1	260690			62512	8182	44038	44100	67651	67651					0.13584525970691175
QKPLLKFVS	9	Unmodified	_QKPLLKFVS_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2821044921875	2	530.331685	1058.64882	-0.34931	-0.00018525	-1.572	-0.00083369	-1.9213	-0.0010189	530.3301434446226	48.436	0.24433	48.502	48.378	48.622	0.066795					8	6	2	0	0	0	0.024506	1	4854	4854		23.042	0	1	49518			62513	10978	44039	44101	67652	67652					0.12183783270756976
QKPLLKFVS	9	Unmodified	_QKPLLKFVS_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.331685	1058.64882	-0.89867	-0.0004766	0.56295	0.00029855	-0.33572	-0.00017804	530.3318033690068	48.403	0.72763	48.305	48.002	48.729	-0.097553	-0.10981	0.00033213	NaN	23.042	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1831800			62514	10978	44039	44101							0.12183783270756976
QKPLLKFVS	9	Unmodified	_QKPLLKFVS_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.331685	1058.64882	-0.16067	-8.5211E-05	-0.2457	-0.0001303	-0.40637	-0.00021551	530.3313782840919	48.558	0.94376	48.376	48.056	49	-0.18206	-0.039312	-0.00052557	NaN	23.042	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1622900			62515	10978	44039	44101							0.12183783270756976
QKPLLLQDLIQ	11	Unmodified	_QKPLLLQDLIQ_					0	0	0			REV__nc|ENSG00000037757|Q9BV20-2|MRI1	REV__nc|ENSG00000037757|Q9BV20-2|MRI1	MSMS	OPSCC_40_ClassI_Rep-2	5	436.93389892578125	3	436.934372	1307.78129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.621	1	20.425	19.925	20.925	-0.19577								0	0	0	1.2004	1	561	561		31.068	6.0004	1		+		62516	20072	44040	44102	67653	67653					0.13970763216889281
QKQAAFIVN	9	Unmodified	_QKQAAFIVN_					0	0	0			REV__ENSG00000111358|ENST00000543341|GTF2H3	REV__ENSG00000111358|ENST00000543341|GTF2H3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7492370605469	2	509.787641	1017.56073	-0.55979	-0.00028537	0.21538	0.0001098	-0.34441	-0.00017558	509.7876739434383	30.517	0.7456	30.526	30.082	30.828	0.0086708					42	17	4	0	0	0	0.024	1	1889	1889		45.952	0	1	491680	+		62517	21912	44041	44103	67654	67654					0.05265162680132107
QKQEMQAAH	9	Unmodified	_QKQEMQAAH_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7730102539062	2	535.756015	1069.49748	-0.61009	-0.00032686	-2.5862	-0.0013856	-3.1963	-0.0017124	535.7545777850497	41.598	0.28812	41.467	41.354	41.642	-0.1304					10	7	2	0	0	0	0.023817	1	3739	3739		51.335	0	1	215830	+		62518	20986	44042	44104	67655	67655					-0.03449146099410427
QKQGLVTSH	9	Unmodified	_QKQGLVTSH_					0	0	0			REV__ENST00000543310.5_1_12:133617958-133618057:+|nuORF	REV__ENST00000543310.5_1_12:133617958-133618057:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80133056640625	2	499.274898	996.535243	-0.18816	-9.3946E-05	0.3345	0.00016701	0.14633	7.3061E-05	499.2749006403484	30.918	0.50195	30.992	30.792	31.294	0.074316					15	11	2	0	0	0	0.024205	1	2006	2006		63.306	5.495	1	137610	+		62519	34803	44043	44105	67656	67656					0.03683688157718734
QKQGSRIIS	9	Unmodified	_QKQGSRIIS_					0	0	0			REV__nc|ENSG00000203705|Q17R31-4|TATDN3	REV__nc|ENSG00000203705|Q17R31-4|TATDN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.32843017578125	2	508.795998	1015.57744	-0.63417	-0.00032266	-0.14547	-7.4013E-05	-0.77963	-0.00039667	508.7948569405474	33.736	0.40682	33.736	33.487	33.894	0					16	10	3	0	0	0	0.023635	1	2463	2463		47.657	0	1	168680	+		62520	28538	44044	44106	67657	67657					0.07027663566088904
QKQKQPSI	8	Unmodified	_QKQKQPSI_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7358703613281	2	478.779816	955.545079	0.98484	0.00047152	-1.1626	-0.00055664	-0.17779	-8.5124E-05	478.7795481068495	60.154	0.41064	59.957	59.689	60.1	-0.19742					15	10	2	0	0	0	0.027866	1	6695	6695		45.952	10.334	1	145900			62521	10204	44045	44107	67658	67658					0.0655287616308442
QKQLQSHLK	9	Unmodified	_QKQLQSHLK_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.3262329101562	2	555.324922	1108.63529	0.79642	0.00044227	2.4267	0.0013476	3.2231	0.0017899	555.3261545767782	58.989	3.4597	58.989	57.835	61.295	0					167	93	3	0	0	0	0.022411	1	6977	6977		101.6	0	1	2043500	+		62522	36711	44046	44108	67659	67659					0.08531925491524817
QKQPRIIV	8	Unmodified	_QKQPRIIV_					0	0	0			REV__nc|ENSG00000166840|Q969I3-2|GLYATL1;REV__ENSG00000255151|ENST00000527482|GLYATL1B;REV__ENST00000534119.1_1_11:58715222-58723497:+|nuORF	REV__nc|ENSG00000166840|Q969I3-2|GLYATL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.31378173828125	2	491.313826	980.613099	-0.087936	-4.3204E-05	0.13362	6.565E-05	0.045684	2.2445E-05	491.313724639392	21.932	0.5723	21.744	21.483	22.055	-0.18813					32	11	4	0	0	0	0.96719	1	745	745		42.474	3.6683	1	437660	+		62523	36893;29062;34628	44047	44109	67660	67660					0.12201745813752041
QKQYKVHL	8	Unmodified	_QKQYKVHL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF;ENST00000531368.1_1_17:42286674-42287095:-|nuORF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2803955078125	2	522.303458	1042.59236	-0.98153	-0.00051265	-3.226	-0.0016849	-4.2075	-0.0021976	522.3016914752297	38.281	0.6236	38.199	37.984	38.607	-0.082516					38	16	3	0	0	0	0.027866	1	3239	3239		42.474	14.592	1	1771300			62524	2888	44048	44110	67661	67661					0.07277155434076121
QKREQHEEKP	10	Unmodified	_QKREQHEEKP_					0	0	0		nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.8811340332031	3	436.893347	1307.65821	-0.23263	-0.00010163	0.89471	0.00039089	0.66208	0.00028926	436.8944559629211	39.901	0.4208	39.676	39.62	40.041	-0.225					13	10	2	0	0	0	0.03519	1	3429	3429		45.908	0	1	371480			62525	7584	44049	44111	67662	67662					0.016688998183099102
QKRKAKAS	8	Unmodified	_QKRKAKAS_					0	0	0		nc|ENSG00000145901|Q15025-2|TNIP1;nc|ENSG00000145901|Q15025-3|TNIP1;ENSG00000145901|ENST00000521591|TNIP1	nc|ENSG00000145901|Q15025-2|TNIP1	nc|ENSG00000145901|Q15025-2|TNIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.787841796875	2	458.787976	915.561398	0.65246	0.00029934	-2.2871	-0.0010493	-1.6346	-0.00074995	458.7868940578265	92.184	1.9062	92.193	91.701	93.608	0.0094147					162	45	6	0	0	0	1.043	1	11579	11579		30.504	0	1	27672000			62526	18360	44050	44112	67663	67663					0.10024002119848774
QKRKKETT	8	Unmodified	_QKRKKETT_					0	0	0			REV__ENST00000592013.1_1_18:60003756-60003918:+|nuORF	REV__ENST00000592013.1_1_18:60003756-60003918:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80377197265625	2	509.803823	1017.59309	0.74352	0.00037905	-1.5677	-0.00079923	-0.82421	-0.00042018	509.80291687751657	98.304	1.8221	98.168	97.854	99.676	-0.13625					55	44	2	0	0	0	1.043	1	12166	12166		30.504	0	1	682410	+		62527	35737	44051	44113	67664	67664					0.08499950083125896
QKRLKTVL	8	Unmodified	_QKRLKTVL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.3296813964844	2	493.329476	984.6444	-0.49246	-0.00024294	-0.0024425	-1.2049E-06	-0.4949	-0.00024415	493.32946382246314	24.453	1.12	24.238	23.778	24.898	-0.2151					64	25	4	0	0	0	0.77775	3	1073	1062;1073;1085		60.972	2.19	1	4942600			62528	4888	44052	44114	67665;67666;67667	67666					0.15146318847837392
QKRLKTVL	8	Unmodified	_QKRLKTVL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3296203613281	2	493.329476	984.6444	-0.075884	-3.7436E-05	-0.25475	-0.00012568	-0.33064	-0.00016311	493.32930832383397	24.243	0.98577	24.068	23.612	24.598	-0.17484					64	22	5	0	0	0	0.94517	2	1024	1024;1035		45.952	1.8352	1	4472200			62529	4888	44052	44114	67668;67669	67668					0.15146318847837392
QKRLKTVL	8	Unmodified	_QKRLKTVL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.3294372558594	2	493.329476	984.6444	2.0787	0.0010255	-2.5907	-0.0012781	-0.51199	-0.00025258	493.3281727732496	24.316	1.0079	24.136	23.671	24.678	-0.18089					63	22	4	0	0	0	1.0338	1	1024	1024		31.955	1.4512	1	4478600			62530	4888	44052	44114	67670	67670					0.15146318847837392
QKRLRRQRPK	10	Unmodified	_QKRLRRQRPK_					0	0	0			REV__ENST00000263119.9_1_22:24432555-24437617:+|nuORF	REV__ENST00000263119.9_1_22:24432555-24437617:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2605895996094	3	455.960249	1364.85892	-0.68794	-0.00031367	4.4618	0.0020344	3.7738	0.0017207	456.2979356230993	39.114	0.10724	39.138	39.063	39.17	0.023727					4	2	2	0	0	0	0.03519	1	3276	3276		7.0187	0	1	24817	+		62531	29678	44053	44115	67671	67671					0.19108258716278215
QKRRHIFKMKN	11	Unmodified	_QKRRHIFKMKN_					0	0	0		ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.95904541015625	3	495.957628	1484.85106	0.30887	0.00015319	1.9953	0.0009896	2.3042	0.0011428	495.9586267866749	102.2	1.5211	102.2	101.58	103.1	-0.0054398					89	35	3	0	0	0	1.09	1	13014	13014		14.086	0.57807	1	815360			62532	14009	44054	44116	67672	67672					0.12802363404512107
QKRRRKGWELQ	11	Unmodified	_QKRRRKGWELQ_					0	0	0			REV__ENST00000261303.12_1_14:90722897-90729664:+|nuORF	REV__ENST00000261303.12_1_14:90722897-90729664:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7867126464844	3	495.623414	1483.84841	0.98502	0.0004882	4.2648	0.0021137	5.2498	0.0026019	495.62549945857916	19.856	0.54442	19.656	19.305	19.85	-0.2001					16	10	2	0	0	0	0.024816	1	432	432		21.78	8.2725	1	23943	+		62533	29619	44055	44117	67673	67673					0.12584231271239332
QKRVPLGEF	9	Unmodified	_QKRVPLGEF_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2793579101562	2	537.308741	1072.60293	-1.0462	-0.00056212	4.1445	0.0022269	3.0984	0.0016648	537.3108447534786	45.608	0.54491	45.456	45.244	45.789	-0.15156					28	15	2	0	0	0	0.024466	1	4438	4438		31.53	8.0071	1	548180			62534	10401	44056	44118	67674	67674					0.06953138088510968
QKSILRALK	9	Unmodified	_QKSILRALK_					0	0	0		ENST00000459741.5_1_21:45508322-45508496:+|nuORF	ENST00000459741.5_1_21:45508322-45508496:+|nuORF	ENST00000459741.5_1_21:45508322-45508496:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8505249023438	2	528.848033	1055.68151	0.11071	5.8549E-05	-0.29942	-0.00015835	-0.18871	-9.98E-05	528.8476371704338	17.701	0.24804	17.558	17.453	17.701	-0.14278					8	4	2	0	0	0	0.91321	1	195	195		31.53	1.0262	1	24462			62535	14633	44057	44119	67675	67675					0.15589990393596054
QKSILRALK	9	Unmodified	_QKSILRALK_					0	0	0		ENST00000459741.5_1_21:45508322-45508496:+|nuORF	ENST00000459741.5_1_21:45508322-45508496:+|nuORF	ENST00000459741.5_1_21:45508322-45508496:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	528.848033	1055.68151	2.8229	0.0014929	-2.9941	-0.0015834	-0.17126	-9.0568E-05	528.8463987288379	17.584	0.24768	17.584	17.449	17.697	0	-0.063315	0.0002245	NaN	31.53	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39372			62536	14633	44057	44119							0.15589990393596054
QKSLEADPN	9	Unmodified	_QKSLEADPN_					0	0	0		KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;KDM6A|p.H996Nfs*5|1|0.74|ENSG00000147050|chrX:45079190-45079260|GAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATGAAAACTGGGATCCCACTGGAACAAA/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY	KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;nc|ENSG00000183878|O14607-2|UTY	nc|ENSG00000183878|O14607-2|UTY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2491455078125	2	501.248546	1000.48254	0.28832	0.00014452	-0.24033	-0.00012046	0.047998	2.4059E-05	501.2483733429364	104.84	0.69293	104.84	104.5	105.19	0					54	22	3	0	0	0	0.54416	1	13470	13470		56.434	5.2411	1	339730			62537	5927;9290	44058	44120	67676	67676					-0.017683146957665485
QKSLEADPN	9	Unmodified	_QKSLEADPN_					0	0	0		KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;KDM6A|p.H996Nfs*5|1|0.74|ENSG00000147050|chrX:45079190-45079260|GAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATGAAAACTGGGATCCCACTGGAACAAA/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY	KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;nc|ENSG00000183878|O14607-2|UTY	nc|ENSG00000183878|O14607-2|UTY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.24945068359375	2	501.248546	1000.48254	-0.045881	-2.2998E-05	0.09135	4.5789E-05	0.045468	2.2791E-05	501.2485766471276	104.85	0.58165	104.85	104.54	105.13	0.00096893					47	18	3	0	0	0	0.80003	1	13418	13418		39.253	1.4413	1	312450			62538	5927;9290	44058	44120	67677	67677					-0.017683146957665485
QKSLEADPN	9	Unmodified	_QKSLEADPN_					0	0	0		KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;KDM6A|p.H996Nfs*5|1|0.74|ENSG00000147050|chrX:45079190-45079260|GAACATATGGTAGAAGTGAGGACACAGTTGTTGCAGCCAGCAGATGAAAACTGGGATCCCACTGGAACAAA/-|frameshift_variant;nc|ENSG00000147050|O15550|KDM6A;ENSG00000147050|ENST00000611820|KDM6A;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY	KDM6A|p.Q544Rfs*4|1|0.53|ENSG00000147050|chrX:45063525-45063525|A/-|frameshift_variant;nc|ENSG00000183878|O14607-2|UTY	nc|ENSG00000183878|O14607-2|UTY	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	501.248546	1000.48254	0.16682	8.3617E-05	0.009021	4.5217E-06	0.17584	8.8139E-05	501.24847195430425	105.31	0.78471	105.18	104.77	105.56	-0.12444	0.21725	0.00014553	NaN	56.434	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285490			62539	5927;9290	44058	44120							-0.017683146957665485
QKSLFRTRPR	10	Unmodified	_QKSLFRTRPR_					0	0	0			REV__ENSG00000213921|ENST00000638280|LEUTX	REV__ENSG00000213921|ENST00000638280|LEUTX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.23541259765625	3	430.258072	1287.75239	-0.90362	-0.00038879	3.2675	0.0014059	2.3639	0.0010171	430.25933923850596	25.264	0.19572	25.23	25.079	25.275	-0.034395					5	4	2	0	0	0	0.03519	1	1165	1165		3.6191	0	1	29360	+		62540	28757	44059	44121	67678	67678					0.12002083431116262
QKTEEPLGSP	10	Unmodified	_QKTEEPLGSP_					0	0	0		ENST00000594468.1_1_19:58989018-58989420:+|nuORF;ENST00000391694.4_1_19:58988585-58991546:+|nuORF;nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446	ENST00000594468.1_1_19:58989018-58989420:+|nuORF	ENST00000594468.1_1_19:58989018-58989420:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2445678710938	2	543.277303	1084.54005	-0.47536	-0.00025825	3.5053	0.0019044	3.03	0.0016461	543.2792114190347	68.033	1.0692	67.794	67.118	68.187	-0.23814					32	25	2	0	0	0	0.03519	1	7766	7766		39.253	19.893	1	249310			62541	1760	44060	44122	67679	67679					0.001165275098173879
QKTIALSQ	8	Unmodified	_QKTIALSQ_					0	0	0			REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.2249755859375	2	444.761092	887.507631	-0.4772	-0.00021224	0.52217	0.00023224	0.044968	2E-05	444.7612082644636	30.057	0.6329	29.813	29.612	30.245	-0.24415					29	14	3	0	0	0	0.027866	1	1949	1949		30.318	7.281	1	249100	+		62542	20116	44061	44123	67680	67680					0.059377848974691005
QKTIEFTL	8	Unmodified	_QKTIEFTL_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2789611816406	2	490.276575	978.538597	0.0015902	7.7963E-07	-0.52643	-0.00025809	-0.52484	-0.00025731	490.2763044043723	101.32	0.56325	101.32	101.08	101.64	0					36	12	4	0	0	0	0.94517	1	12988	12988		45.952	3.5558	1	584600			62543	10599	44062	44124	67681	67681					0.04846938211710494
QKVAGNSL	8	Unmodified	_QKVAGNSL_					0	0	0			REV__nc|ENSG00000211818|A0A0B4J263|TRAV39	REV__nc|ENSG00000211818|A0A0B4J263|TRAV39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5702819824219	2	408.732335	815.450116	0.78614	0.00032132	-0.53134	-0.00021718	0.2548	0.00010414	408.7320285196225	31.778	0.60426	31.847	31.527	32.131	0.068962					30	14	3	0	0	0	0.027866	1	2134	2134		40.573	0	1	370520	+		62544	37116	44063	44125	67682	67682					0.03500942691914588
QKVEPVRQGK	10	Unmodified	_QKVEPVRQGK_					0	0	0			REV__ENST00000294517.10_1_1:33547225-33547339:+|nuORF	REV__ENST00000294517.10_1_1:33547225-33547339:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8032836914062	2	584.843479	1167.67241	-0.93173	-0.00054492	0.54181	0.00031688	-0.38991	-0.00022804	584.8436871239179	53.753	0.44138	53.507	53.275	53.717	-0.2453					27	12	3	0	0	0	0.03519	1	5667	5667		26.693	3.6504	1	1748000	+		62545	29966	44064	44126	67683	67683					0.09527597037254054
QKVIKHWFRNR	11	Unmodified	_QKVIKHWFRNR_					0	0	0		ZFHX4|p.T2180R|1|0.39|ENSG00000091656|chr8:76853460-76853460|C/G|missense_variant	ZFHX4|p.T2180R|1|0.39|ENSG00000091656|chr8:76853460-76853460|C/G|missense_variant	ZFHX4|p.T2180R|1|0.39|ENSG00000091656|chr8:76853460-76853460|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3125305175781	3	504.628388	1510.86333	-1.4318	-0.00072255	-2.3761	-0.0011991	-3.808	-0.0019216	504.96137746311314	21.125	0.73669	20.912	20.673	21.41	-0.2128					22	14	2	0	0	0	0.02484	1	613	613		17.167	0.63689	1	20293			62546	38175	44065	44127	67684	67684					0.12833723139192443
QKVKQELQ	8	Unmodified	_QKVKQELQ_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7926940917969	2	500.792924	999.571294	-2.1727	-0.0010881	1.3672	0.00068466	-0.80553	-0.00040341	500.7936378130004	52.12	0.76794	51.851	51.548	52.316	-0.26903					50	20	3	0	0	0	0.56592	1	5381	5381		79.451	2.6769	1	11260000	+		62547	23535	44066	44128	67685	67685					0.07149145334562945
QKVRPNEENN	10	Unmodified	_QKVRPNEENN_					0	0	0		ENSG00000176697|ENST00000356660|BDNF;nc|ENSG00000176697|P23560-2|BDNF;nc|ENSG00000176697|P23560-3|BDNF;nc|ENSG00000176697|P23560-5|BDNF;nc|ENSG00000176697|P23560-4|BDNF	ENSG00000176697|ENST00000356660|BDNF	ENSG00000176697|ENST00000356660|BDNF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2299499511719	3	409.874064	1226.60036	-0.62625	-0.00025668	-1.7608	-0.00072169	-2.387	-0.00097838	409.87315349017825	24.399	0.93384	24.352	24.133	25.067	-0.047148					30	20	2	0	0	0	0.03519	1	1125	1125		30.569	0	1	160920			62548	8662	44067	44129	67686	67686					-0.0038736210708520957
QKVVEKGAI	9	Unmodified	_QKVVEKGAI_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2966613769531	2	486.297842	970.581131	-0.64268	-0.00031253	-0.748	-0.00036375	-1.3907	-0.00067628	486.29711765181827	32.634	0.71027	32.646	32.338	33.048	0.011799					38	18	3	0	0	0	0.19099	1	2273	2273		90.37	19.074	1	1080300			62549	8681	44068	44130	67687	67687					0.09466333339958055
QKVVEKGAI	9	Unmodified	_QKVVEKGAI_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.297842	970.581131	-0.75091	-0.00036517	-0.79506	-0.00038664	-1.546	-0.0007518	486.29712981548283	32.761	0.63916	32.761	32.457	33.096	0	0.10695	-3.4504E-05	NaN	90.37	45	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	907920			62550	8681	44068	44130							0.09466333339958055
QKVVEKGAI	9	Unmodified	_QKVVEKGAI_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.297842	970.581131	-0.52692	-0.00025624	-0.73386	-0.00035688	-1.2608	-0.00061312	486.2971226305162	32.492	0.60578	32.555	32.278	32.883	0.062885	-0.098877	2.5016E-05	NaN	90.37	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950030			62551	8681	44068	44130							0.09466333339958055
QKVVQQALE	9	Unmodified	_QKVVQQALE_					0	0	0			REV__nc|ENSG00000112561|P19484-2|TFEB	REV__nc|ENSG00000112561|P19484-2|TFEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7893676757812	2	521.798206	1041.58186	0.89928	0.00046924	2.6541	0.0013849	3.5534	0.0018542	521.7994085490823	84.295	1.0536	84.136	83.844	84.898	-0.15869					52	24	3	0	0	0	0.024319	1	10179	10179		56.721	20.274	1	673060	+		62552	22011	44069	44131	67688	67688					0.06273127989015848
QKVVQQALE	9	Unmodified	_QKVVQQALE_					0	0	0			REV__nc|ENSG00000112561|P19484-2|TFEB	REV__nc|ENSG00000112561|P19484-2|TFEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7894287109375	2	521.798206	1041.58186	0.55734	0.00029082	2.892	0.001509	3.4494	0.0017999	521.7995746009182	84.326	1.0229	84.188	83.845	84.868	-0.13788					45	23	3	0	0	0	0.024405	1	10177	10177		53.351	30.309	1	359400	+		62553	22011	44069	44131	67689	67689					0.06273127989015848
QKWMMKTVKEE	11	Unmodified	_QKWMMKTVKEE_					0	0	0		ENST00000216807.11_1_14:36295630-36302200:+|nuORF	ENST00000216807.11_1_14:36295630-36302200:+|nuORF	ENST00000216807.11_1_14:36295630-36302200:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.3031921386719	3	479.912474	1436.71559	0.31948	0.00015332	2.6223	0.0012585	2.9418	0.0014118	479.913565076622	18.636	0.34303	18.505	18.302	18.645	-0.13147					8	6	2	0	0	0	0.024851	1	298	298		21.032	5.6991	1	12296			62554	11162	44070	44132	67690	67690					0.014702827080554925
QKWRVPYGP	9	Unmodified	_QKWRVPYGP_					0	0	0		ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.8316040039062	2	565.808908	1129.60326	-0.42987	-0.00024322	3.7015	0.0020943	3.2716	0.0018511	566.311580789421	53.902	0.12019	53.704	53.619	53.74	-0.19739					6	3	2	0	0	0	0.024535	1	5673	5673		18.324	7.4589	1	192580			62555	13825	44071	44133	67691	67691					0.043645578083669534
QKWRVPYGP	9	Unmodified	_QKWRVPYGP_					0	0	0		ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.808908	1129.60326	-0.52933	-0.0002995	0.26384	0.00014929	-0.26549	-0.00015022	565.8086682594394	53.528	0.49522	53.528	53.16	53.655	0	-0.024004	-0.00028924	NaN	40.573	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183830			62556	13825	44071	44133							0.043645578083669534
QKWRVPYGP	9	Unmodified	_QKWRVPYGP_					0	0	0		ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.808908	1129.60326	-0.97233	-0.00055015	0.37099	0.00020991	-0.60133	-0.00034024	565.8092233834325	53.5	0.47125	53.353	53.168	53.639	-0.14723	-0.19895	-0.00016799	NaN	40.573	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200070			62557	13825	44071	44133							0.043645578083669534
QKWRVPYGP	9	Unmodified	_QKWRVPYGP_					0	0	0		ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	ENST00000412716.7_1_12:51636901-51636967:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.808908	1129.60326	-1.2517	-0.00070824	0.53537	0.00030292	-0.71636	-0.00040532	565.809140148185	53.293	0.39743	53.388	53.195	53.592	0.095669	-0.16368	1.8025E-05	NaN	40.573	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216100			62558	13825	44071	44133							0.043645578083669534
QKYATISK	8	Unmodified	_QKYATISK_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.7688293457031	2	469.768917	937.523281	-0.43085	-0.0002024	0.42884	0.00020146	-0.0020044	-9.4161E-07	469.76906570334876	25.191	1.2497	25.191	24.874	26.124	0					52	29	2	0	0	0	0.47665	1	1154	1154		87.754	13.78	1	4557900	+		62559	28257	44072	44134	67692	67692					0.0520207141452147
QKYATISK	8	Unmodified	_QKYATISK_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.7690734863281	2	469.768917	937.523281	0.80644	0.00037884	-0.8621	-0.00040499	-0.055661	-2.6148E-05	469.7684803108888	25.074	1.1378	25.154	24.871	26.008	0.08009					51	26	2	0	0	0	0.62178	1	1117	1117		74.255	10.949	1	4607700	+		62560	28257	44072	44134	67693	67693					0.0520207141452147
QKYNEPLSESI	11	Unmodified	_QKYNEPLSESI_					0	0	0			REV__nc|ENSG00000117091|P09326-2|CD48	REV__nc|ENSG00000117091|P09326-2|CD48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7637939453125	3	436.554108	1306.6405	-0.28414	-0.00012404	2.6514	0.0011575	2.3673	0.0010334	436.5563697608115	26.878	0.67422	26.71	26.339	27.013	-0.16816					18	15	2	0	0	0	0.024777	1	1433	1433		35.178	1.0917	1	28853	+		62561	22322	44073	44135	67694	67694					-0.000558602271894415
QKYSCVII	8	Unmodified	_QKYSCVII_					0	0	0			REV__ENSG00000188133|ENST00000342743|TMEM215	REV__ENSG00000188133|ENST00000342743|TMEM215	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.29248046875	2	477.259871	952.505189	0.8535	0.00040734	-0.45669	-0.00021796	0.39681	0.00018938	477.26122902590333	46.689	0.98327	46.689	46.163	47.146	0					47	26	3	0	0	0	0.027866	1	4664	4664		19.36	0	1	218500	+		62562	28010	44074	44136	67695	67695					0.027036131681597908
QLAAHLIS	8	Unmodified	_QLAAHLIS_					0	0	0			REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF	REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7296447753906	2	426.750527	851.486502	-0.81516	-0.00034787	-3.5356	-0.0015088	-4.3507	-0.0018567	426.7504979134427	29.241	0.21668	28.996	28.838	29.055	-0.24524					6	4	2	0	0	0	0.027866	1	1753	1753		33.516	8.0654	1	24051	+		62563	35203	44075	44137	67696	67696					0.054818195886127796
QLAAHLIS	8	Unmodified	_QLAAHLIS_					0	0	0			REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF	REV__ENST00000562782.1_1_16:89180808-89181345:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.750527	851.486502	-0.58812	-0.00025098	-6.0761	-0.002593	-6.6642	-0.002844	426.747979702518	28.937	0.3	28.941	28.755	29.055	0.0031357	-0.02772	-0.00095681	NaN	24.203	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99911	+		62564	35203	44075	44137							0.054818195886127796
QLAAQQQAL	9	Unmodified	_QLAAQQQAL_					0	0	0			REV__ENSG00000182827|ENST00000366812|ACBD3	REV__ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7690734863281	2	485.769448	969.524344	-0.71668	-0.00034814	0.16561	8.0449E-05	-0.55107	-0.00026769	485.76936822373204	37.535	0.56198	37.472	37.163	37.725	-0.063385					27	15	2	0	0	0	0.39228	1	3053	3053		66.429	3.123	1	1692600	+		62565	27512	44076	44138	67697	67697					0.03836285783427229
QLAEAPPFLL	10	Unmodified	_QLAEAPPFLL_					0	0	0			REV__ENST00000563447.1_1_16:2293017-2294430:-|nuORF	REV__ENST00000563447.1_1_16:2293017-2294430:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2692260742188	2	549.813325	1097.6121	-1.2808	-0.00070418	1.1654	0.00064077	-0.11534	-6.3416E-05	549.8136433467824	65.166	0.4082	64.963	64.738	65.146	-0.20254					11	9	2	0	0	0	0.03519	1	7410	7410		37.812	0	1	62318	+		62566	26204	44077	44139	67698	67698					0.06719486654174034
QLAEDFLKD	9	Unmodified	_QLAEDFLKD_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.8008422851562	2	539.774396	1077.53424	0.15894	8.5792E-05	-0.40724	-0.00021982	-0.2483	-0.00013402	539.7739857449681	87.461	0.83321	87.325	86.926	87.76	-0.13613					38	19	3	0	0	0	0.023417	1	10685	10685		79.451	0	1	346260			62567	2921	44078	44140	67699	67699					-0.0014257100183385774
QLAEKFDL	8	Unmodified	_QLAEKFDL_					0	0	0		ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000561220.6_1_15:45434150-45457096:+|nuORF	ENSG00000137857|ENST00000389037|DUOX1	ENSG00000137857|ENST00000389037|DUOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.26104736328125	2	482.260925	962.507297	-0.42737	-0.0002061	0.89587	0.00043204	0.46849	0.00022594	482.26118828518383	66.431	1.3233	66.461	66.237	67.56	0.030106					88	35	3	0	0	0	0.68164	1	7842	7842		68.787	0	1	3955500			62568	5169	44079	44141	67700	67700					0.02454365177618456
QLAFQVEQV	9	Unmodified	_QLAFQVEQV_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2859497070312	2	531.284931	1060.55531	-0.30655	-0.00016287	0.77071	0.00040947	0.46416	0.0002466	531.2853530078233	70.532	0.49828	70.544	70.272	70.77	0.012421					17	11	2	0	0	0	0.26966	1	8448	8448		79.713	0	1	731220			62569	4460	44080	44142	67701	67701					0.027454390976799914
QLAGHQPPE	9	Unmodified	_QLAGHQPPE_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.29815673828125	2	488.745973	975.477394	-0.18263	-8.9259E-05	1.7441	0.00085243	1.5615	0.00076317	488.74658300386795	26.79	0.79096	26.79	26.243	27.034	0					35	18	2	0	0	0	0.024495	1	1434	1434		19.997	9.7315	1	195470	+		62570	26783	44081	44143	67702	67702					-0.011325737677225334
QLAHRLRGSI	10	Unmodified	_QLAHRLRGSI_					0	0	0		PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.E1291Kfs*54|1|0.43|ENSG00000106772|chr9:76708403-76708403|C/-|frameshift_variant;ENST00000492157.5_1_9:79438526-79520879:-|nuORF	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.843017578125	2	575.843813	1149.67307	-0.082095	-4.7274E-05	-1.351	-0.00077795	-1.4331	-0.00082522	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	0.94316	2	11141	11141;11180		51.193	1.1092	1	1475600			62571	2813	44082	44144	67703;67704	67703					0.10422436476983421
QLAIINEY	8	Unmodified	_QLAIINEY_					0	0	0			REV__nc|ENSG00000070081|P80303-2|NUCB2	REV__nc|ENSG00000070081|P80303-2|NUCB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2368469238281	2	482.260925	962.507297	0.41432	0.00019981	0.40437	0.00019501	0.81869	0.00039482	482.26064342975627	70.181	0.73703	69.967	69.398	70.135	-0.21424					33	17	3	0	0	0	0.027866	1	8100	8100		99.375	36.069	1	502750	+		62572	20417	44083	44145	67705	67705					0.02454365177618456
QLAKKTAEI	9	Unmodified	_QLAKKTAEI_					0	0	0			REV__ENSG00000092850|ENST00000207457|TEKT2	REV__ENSG00000092850|ENST00000207457|TEKT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3031921386719	2	501.303124	1000.5917	1.5975	0.00080083	-2.3015	-0.0011537	-0.70401	-0.00035292	501.30189211317094	24.75	0.82714	24.569	24.198	25.025	-0.18089					51	18	4	0	0	0	0.67244	1	1097	1097		47.96	1.9873	1	2521700	+		62573	20939	44084	44146	67706	67706					0.09142315994370165
QLALFPDNL	9	Unmodified	_QLALFPDNL_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7907104492188	2	515.782025	1029.5495	-0.44733	-0.00023072	-3.9374	-0.0020308	-4.3847	-0.0022615	515.7803500969493	41.429	0.37831	41.452	41.254	41.633	0.023006					15	10	2	0	0	0	0.024025	1	3662	3662		52.937	5.2794	1	82221	+		62574	20580	44085	44147	67707	67707					0.03590340585992635
QLALFSVEL	9	Unmodified	_QLALFSVEL_					0	0	0			REV__ENST00000471384.5_1_22:31556275-31593084:+|nuORF	REV__ENST00000471384.5_1_22:31556275-31593084:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.2907409667969	2	510.292225	1018.5699	-0.3399	-0.00017345	-0.59595	-0.00030411	-0.93585	-0.00047756	510.2913978281171	57.436	0.5687	57.436	57.227	57.796	0					39	14	4	0	0	0	0.16468	1	6473	6473		96.19	0	1	2864900	+		62575	33174	44086	44148	67708	67708					0.061355112458159056
QLAMLLAEI	9	Unmodified	_QLAMLLAEI_					0	0	0		ENSG00000174606|ENST00000366962|ANGEL2;nc|ENSG00000174606|Q5VTE6-2|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3031921386719	2	501.288628	1000.5627	1.1307	0.00056682	2.6369	0.0013218	3.7676	0.0018887	501.2898728189736	24.943	0.47793	24.771	24.556	25.034	-0.17151					12	10	2	0	0	0	0.024263	1	1097	1097		71.296	19.96	1	54759			62576	8484	44087	44149	67709	67709					0.06244455373735036
QLAMTIALL	9	Unmodified	_QLAMTIALL_					0	0	0			REV__PBRM1|p.S343L|1|0.21|ENSG00000163939|chr3:52642013-52642013|G/A|missense_variant	REV__PBRM1|p.S343L|1|0.21|ENSG00000163939|chr3:52642013-52642013|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.26251220703125	2	487.291171	972.567789	-0.086106	-4.1958E-05	0.48786	0.00023773	0.40175	0.00019577	487.29137560059775	55.581	0.52887	55.365	55.174	55.702	-0.21607					27	14	2	0	0	0	0.024436	1	5947	5947		38.806	0	1	879180	+		62577	37351	44088	44150	67710	67710					0.08040759236359918
QLAMTIALL	9	Unmodified	_QLAMTIALL_					0	0	0			REV__PBRM1|p.S343L|1|0.21|ENSG00000163939|chr3:52642013-52642013|G/A|missense_variant	REV__PBRM1|p.S343L|1|0.21|ENSG00000163939|chr3:52642013-52642013|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.291171	972.567789	-1.0218	-0.0004979	0.59671	0.00029077	-0.42505	-0.00020712	487.2918716392153	55.454	0.60065	55.307	55.122	55.723	-0.14664	-0.048221	-3.1234E-05	NaN	53.351	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869920	+		62578	37351	44088	44150							0.08040759236359918
QLAMTIALL	9	Unmodified	_QLAMTIALL_					0	0	0			REV__PBRM1|p.S343L|1|0.21|ENSG00000163939|chr3:52642013-52642013|G/A|missense_variant	REV__PBRM1|p.S343L|1|0.21|ENSG00000163939|chr3:52642013-52642013|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.291171	972.567789	-0.51214	-0.00024956	1.4103	0.00068725	0.8982	0.00043768	487.2915856157296	55.61	0.74718	55.395	55.104	55.851	-0.21551	0.039227	0.00076172	NaN	53.351	50	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899830	+		62579	37351	44088	44150							0.08040759236359918
QLAMYLDQ	8	Unmodified	_QLAMYLDQ_					0	0	0			REV__ENSG00000067248|ENST00000251636|DHX29	REV__ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.29010009765625	2	491.239135	980.463718	-0.45737	-0.00022468	1.3278	0.00065229	0.87047	0.00042761	491.23972003760286	44.66	0.51134	44.697	44.375	44.887	0.0369					17	14	2	0	0	0	0.027866	1	4236	4236		97.473	14.186	1	99281	+		62580	20357	44089	44151	67711	67711					-0.0272956759116596
QLAPRCTL	8	Unmodified	_QLAPRCTL_					0	0	0			REV__ENST00000395003.5_2_5:133914477-133914636:+|nuORF	REV__ENST00000395003.5_2_5:133914477-133914636:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.766357421875	2	451.249837	900.485122	-0.089753	-4.0501E-05	-0.46263	-0.00020876	-0.55239	-0.00024926	451.2495289079576	45.384	0.51944	45.132	44.905	45.425	-0.25252					26	14	2	0	0	0	0.027866	1	4249	4249		23.042	0	1	599530	+		62581	31683	44090	44152	67712	67712					0.0308986222820522
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7846069335938	2	535.785099	1069.55564	-0.0719	-3.8523E-05	-0.83811	-0.00044905	-0.91001	-0.00048757	535.7846642158123	55.792	2.0695	55.792	55.427	57.496	0					107	57	5	0	0	0	0.03849	6	6169	6161;6169;6181;6193;6206;6220		134.81	54.518	1	25498000			62582	628	44091	44153	67713;67714;67715;67716;67717;67718	67714					0.023648588175319674
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7850341796875	2	535.785099	1069.55564	-0.54383	-0.00029137	-0.2676	-0.00014337	-0.81142	-0.00043475	535.7849615241677	55.858	2.1483	55.702	55.331	57.479	-0.15601					108	58	4	0	0	0	0.047345	6	6142	6142;6151;6163;6175;6187;6200		129.68	45.221	1	24788000			62583	628	44091	44153	67719;67720;67721;67722;67723;67724	67719					0.023648588175319674
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7852172851562	2	535.785099	1069.55564	-1.4843	-0.00079527	0.69577	0.00037278	-0.78854	-0.00042249	535.7854520728487	55.519	2.1016	55.617	55.257	57.359	0.098015					103	57	4	0	0	0	0.015901	5	6052	6042;6052;6064;6076;6089		157.33	54.556	1	26457000			62584	628	44091	44153	67725;67726;67727;67728;67729	67726					0.023648588175319674
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.784912109375	2	535.785099	1069.55564	-1.1246	-0.00060255	1.1008	0.00058981	-0.023782	-1.2742E-05	535.7855940006654	55.8	0.88258	55.643	55.211	56.093	-0.15655					68	23	4	0	0	0	0.23085	3	6012	6001;6012;6023		84.916	23.944	1	5617400			62585	628	44091	44153	67730;67731;67732	67731					0.023648588175319674
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.785400390625	2	535.785099	1069.55564	-0.39309	-0.00021061	0.37444	0.00020062	-0.018646	-9.9902E-06	535.785210831254	55.838	0.93766	55.622	55.336	56.274	-0.21607					71	24	4	0	0	0	0.03849	3	6021	6010;6021;6033		134.81	56.691	1	5905600			62586	628	44091	44153	67733;67734;67735	67734					0.023648588175319674
QLAQFVHEV	9	Unmodified	_QLAQFVHEV_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000543026.5_1_12:31240692-31242187:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7847290039062	2	535.785099	1069.55564	-1.7266	-0.00092509	1.4761	0.00079088	-0.25048	-0.0001342	535.7857769043777	55.891	1.217	55.676	55.336	56.553	-0.21551					82	31	4	0	0	0	0.12602	4	5998	5998;6010;6021;6035		104.75	25.296	1	5424100			62587	628	44091	44153	67736;67737;67738;67739	67736					0.023648588175319674
QLAQLGWQK	9	Unmodified	_QLAQLGWQK_					0	0	0			REV__ENST00000529354.1_1_11:118992311-119001682:+|nuORF	REV__ENST00000529354.1_1_11:118992311-119001682:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2736206054688	2	536.300916	1070.58728	-1.1737	-0.00062945	-1.1277	-0.00060481	-2.3014	-0.0012343	536.3001866893087	36.387	0.50747	36.344	36.101	36.609	-0.042454					25	13	2	0	0	0	0.024506	1	2912	2912		30.504	0	1	664950	+		62588	26656	44092	44154	67740	67740					0.05480851571473977
QLAQLRLN	8	Unmodified	_QLAQLRLN_					0	0	0			REV__chr17:75724782-75724918|135|13.61|0.44|4.94|+|2|ITGB4,None|1	REV__chr17:75724782-75724918|135|13.61|0.44|4.94|+|2|ITGB4,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2774963378906	2	478.287808	954.561064	-0.34621	-0.00016559	0.67836	0.00032445	0.33214	0.00015886	478.2880484902954	35.362	0.41927	35.406	35.156	35.575	0.04406					18	10	3	0	0	0	0.027866	1	2633	2633		31.955	0	1	97942	+		62589	19389	44093	44155	67741	67741					0.08196582399989438
QLAQPSRLI	9	Unmodified	_QLAQPSRLI_					0	0	0			REV__ENSG00000172113|ENST00000442597|NME6;REV__nc|ENSG00000172113|O75414-3|NME6	REV__ENSG00000172113|ENST00000442597|NME6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.3060302734375	2	513.308741	1024.60293	-0.88255	-0.00045302	1.2581	0.00064582	0.3756	0.0001928	513.3092794041017	53.493	0.61677	53.346	52.985	53.602	-0.14723					48	16	4	0	0	0	0.23085	1	5789	5789		84.916	8.1414	1	2219400	+		62590	26634;36937	44094	44156	67742	67742					0.09161138088529697
QLARAITDL	9	Unmodified	_QLARAITDL_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30413818359375	2	500.792924	999.571294	-0.46238	-0.00023155	-3.8186	-0.0019124	-4.281	-0.0021439	501.2903186692145	25.175	0.48153	24.948	24.708	25.19	-0.22683					14	10	2	0	0	0	0.024374	1	1165	1165		49.442	13.823	1	135710	+		62591	24659	44095	44157	67743	67743					0.07149145334562945
QLARKTLVD	9	Unmodified	_QLARKTLVD_					0	0	0			REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3030395507812	2	522.314023	1042.61349	0.62119	0.00032446	-0.96044	-0.00050165	-0.33925	-0.0001772	522.3134632557296	20.073	0.783	19.85	19.582	20.365	-0.22344					23	15	3	0	0	0	0.024541	1	468	468		25.574	8.8691	1	111990	+		62592	21138	44096	44158	67744	67744					0.09389120742957857
QLARLLFLP	9	Unmodified	_QLARLLFLP_					0	0	0			REV__ENST00000366711.3_1_1:228363807-228363963:+|nuORF	REV__ENST00000366711.3_1_1:228363807-228363963:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.310791015625	2	535.839677	1069.6648	-0.35071	-0.00018793	1.8474	0.00098991	1.4967	0.00080198	536.3418674494478	53.859	0.28504	53.859	53.691	53.976	0					12	7	2	0	0	0	0.024506	1	5835	5835		30.504	14.03	1	89822	+		62593	30983	44097	44159	67745	67745					0.13275489507645943
QLARTRMV	8	Unmodified	_QLARTRMV_					0	0	0			REV__ENST00000282120.6_1_2:85545669-85545816:-|nuORF	REV__ENST00000282120.6_1_2:85545669-85545816:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7925109863281	2	487.781836	973.549119	-1.1378	-0.00055502	-4.1036	-0.0020017	-5.2414	-0.0025567	487.7797297146206	35.657	0.45809	35.622	35.412	35.87	-0.035686					28	11	3	0	0	0	0.027866	1	2785	2785		37.159	11.709	1	351850	+		62594	29893	44098	44160	67746	67746					0.06128642385169769
QLASSTERLL	10	Unmodified	_QLASSTERLL_					0	0	0			REV__ENST00000553480.1_1_14:45332201-45332396:-|nuORF	REV__ENST00000553480.1_1_14:45332201-45332396:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.3135375976562	2	559.31422	1116.61389	0.15894	8.8897E-05	-1.7471	-0.00097716	-1.5881	-0.00088826	559.3121756234218	103.91	1.3852	103.78	102.9	104.29	-0.12561					47	34	2	0	0	0	1.0719	1	12930	12930		36.447	7.2972	1	122930	+		62595	34972	44099	44161	67747	67747					0.060244956721589915
QLAVLGRKG	9	Unmodified	_QLAVLGRKG_					0	0	0			REV__KCNH5|p.P11L|1|0.09|ENSG00000140015|chr14:63045155-63045155|G/A|missense_variant	REV__KCNH5|p.P11L|1|0.09|ENSG00000140015|chr14:63045155-63045155|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7551574707031	2	471.298176	940.581799	0.51657	0.00024346	-0.889	-0.00041898	-0.37243	-0.00017553	471.29758196645247	37.258	0.41487	37.29	37.035	37.45	0.032269					21	10	3	0	0	0	0.024477	1	2989	2989		35.618	10.168	1	209210	+		62596	36170	44100	44162	67748	67748					0.10913172779669367
QLCANLDTWCI	11	Unmodified	_QLCANLDTWCI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2710266113281	3	427.198503	1278.57368	-0.68972	-0.00029465	-2.1818	-0.00093208	-2.8716	-0.0012267	427.19764707637097	39.049	0.60374	38.95	38.737	39.341	-0.098755					23	16	2	0	0	0	0.024792	1	3345	3345		18.531	0	1	80628			62597	2927	44101	44163	67749	67749					-0.05446510314277475
QLCERLGKI	9	Unmodified	_QLCERLGKI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.78564453125	2	530.302601	1058.59065	-0.093266	-4.9459E-05	-3.6178	-0.0019185	-3.711	-0.001968	530.3005609011185	52.803	0.33922	52.895	52.749	53.088	0.091938					13	8	2	0	0	0	0.020937	1	5623	5623		110.12	36.145	1	212140			62598	7771	44102	44164	67750	67750					0.06369778353814581
QLCGLLGF	8	Unmodified	_QLCGLLGF_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77484130859375	2	425.728206	849.44186	-0.28651	-0.00012197	0.99641	0.0004242	0.7099	0.00030223	425.7279109032423	42.188	0.19255	42.056	41.889	42.082	-0.1322					7	5	2	0	0	0	0.027866	1	3823	3823		35.201	8.4046	1	135700	+		62599	20906	44103	44165	67751	67751					0.011116724509292908
QLCKFLQP	8	Unmodified	_QLCKFLQP_					0	0	0			REV__ENSG00000198026|ENST00000322927|ZNF335	REV__ENSG00000198026|ENST00000322927|ZNF335	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7538146972656	2	488.767863	975.521173	0.23754	0.0001161	-0.81368	-0.0003977	-0.57614	-0.0002816	488.76760836439496	52.313	1.1371	52.128	51.298	52.435	-0.18404					46	29	4	0	0	0	0.027866	1	5287	5287		47.916	0	1	668720	+		62600	28375	44104	44166	67752	67752					0.03243319405044076
QLCPDRDGG	9	Unmodified	_QLCPDRDGG_					0	0	0		ENST00000526068.1_1_11:74700005-74701011:+|nuORF;ENST00000532963.1_1_11:74700005-74716467:+|nuORF	ENST00000526068.1_1_11:74700005-74701011:+|nuORF	ENST00000526068.1_1_11:74700005-74701011:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29150390625	2	480.713816	959.413079	0.01848	8.8834E-06	-2.6571	-0.0012773	-2.6386	-0.0012684	480.7126709946161	27.656	0.2542	27.5	27.391	27.645	-0.15664					8	5	2	0	0	0	0.024427	1	1505	1505		19.997	9.1312	1	35762			62601	16109	44105	44167	67753	67753					-0.06825096916156781
QLCPGPPK	8	Unmodified	_QLCPGPPK_					0	0	0			REV__ENSG00000105085|ENST00000263390|MED26	REV__ENSG00000105085|ENST00000263390|MED26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.2279357910156	2	420.225831	838.437109	0.39277	0.00016505	2.4876	0.0010454	2.8804	0.0012104	420.2268190173431	25.563	0.95549	25.643	25.134	26.09	0.08009					38	22	2	0	0	0	1.0133	1	1187	1187		35.201	0	1	979960	+		62602	21492	44106	44168	67754	67754					0.01142788308152376
QLCRVEQPL	9	Unmodified	_QLCRVEQPL_					0	0	0			REV__ENST00000395748.7_1_4:75312256-75312388:+|nuORF	REV__ENST00000395748.7_1_4:75312256-75312388:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3375244140625	2	543.292233	1084.56991	-1.0369	-0.00056333	1.5845	0.00086082	0.54757	0.00029749	543.7955571433511	48.477	0.53432	48.544	48.265	48.8	0.066795					21	14	2	0	0	0	0.023239	1	4913	4913		74.255	0	1	300340	+		62603	31711	44107	44169	67755	67755					0.031011879741527082
QLCWKVLS	8	Unmodified	_QLCWKVLS_					0	0	0		ENST00000391403.3_2_18:19996123-19996312:-|nuORF	ENST00000391403.3_2_18:19996123-19996312:-|nuORF	ENST00000391403.3_2_18:19996123-19996312:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.754150390625	2	488.767863	975.521173	-0.72216	-0.00035297	0.034409	1.6818E-05	-0.68776	-0.00033615	488.76814039010065	52.2	1.1184	52.082	51.281	52.4	-0.11875					54	29	3	0	0	0	0.027866	1	5282	5282		35.618	0	1	509710			62604	13391	44108	44170	67756	67756					0.032433194050668135
QLDAVDLAK	9	Unmodified	_QLDAVDLAK_					0	0	0			REV__ENST00000495312.1_1_2:27255799-27258254:+|nuORF	REV__ENST00000495312.1_1_2:27255799-27258254:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.79071044921875	2	486.771657	971.528761	-0.49914	-0.00024297	-3.3055	-0.001609	-3.8046	-0.001852	486.77203602919195	32.122	0.5084	32.122	31.91	32.418	0					23	12	3	0	0	0	0.02293	1	2169	2169		72.243	0.36577	1	102970	+		62605	22488	44109	44171	67757	67757					0.04185750206318062
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.7974243164062	2	536.797872	1071.58119	0.17753	9.5299E-05	-0.37268	-0.00020005	-0.19514	-0.00010475	536.7978998054938	65.894	0.722	65.894	65.566	66.288	0					67	18	5	0	0	0	0.01388	3	7829	7817;7829;7841		209.84	33.753	1	44484000			62606	5073	44110	44172	67758;67759;67760	67759					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7959594726562	2	536.797872	1071.58119	-0.60393	-0.00032419	0.37532	0.00020147	-0.22861	-0.00012272	536.7983116521777	66.244	0.84967	65.962	65.56	66.409	-0.28148					70	24	5	0	0	0	0.01824	2	7835	7835;7847		209.84	33.753	1	40802000			62607	5073	44110	44172	67761;67762	67761					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.7944946289062	2	536.797872	1071.58119	-0.76281	-0.00040947	0.42899	0.00023028	-0.33382	-0.00017919	536.7983092089328	66.032	1.2739	66.062	65.587	66.861	0.030106					82	35	5	0	0	0	0.01388	3	7739	7739;7763;7775		180.87	44.601	1	33628000			62608	5073	44110	44172	67763;67764;67765	67763					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7974853515625	2	536.797872	1071.58119	-0.48119	-0.0002583	0.088071	4.7276E-05	-0.39311	-0.00021102	536.7979443961215	66.245	0.74214	66.004	65.706	66.448	-0.24144					69	18	5	0	0	0	0.013337	3	7611	7586;7598;7611		199.7	37.452	1	7349200			62609	5073	44110	44172	67766;67767;67768	67768					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.7967529296875	2	536.797872	1071.58119	-0.98347	-0.00052792	0.70681	0.00037942	-0.27666	-0.00014851	536.7982454151817	66.229	0.73767	66.016	65.712	66.449	-0.21327					58	18	4	0	0	0	0.013924	3	7583	7583;7595;7607		199.7	36.197	1	8249700			62610	5073	44110	44172	67769;67770;67771	67769					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.796875	2	536.797872	1071.58119	-1.0485	-0.00056283	0.79183	0.00042505	-0.25667	-0.00013778	536.7982682848028	66.236	0.73094	65.991	65.691	66.422	-0.24517					60	18	4	0	0	0	0.013065	3	7569	7569;7581;7593		214.23	19.167	1	8793300			62611	5073	44110	44172	67772;67773;67774	67772					0.0482628854927043
QLDDVHQK	8	Unmodified	_QLDDVHQK_					0	0	0		nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P;nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1	nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P	nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.80328369140625	2	491.751256	981.487959	-0.58091	-0.00028566	0.49525	0.00024354	-0.085657	-4.2122E-05	491.7514500923888	35.326	0.61428	35.37	35.085	35.699	0.04406					38	15	3	0	0	0	0.027866	1	2686	2686		33.516	0	1	644920			62612	10944	44111	44173	67775	67775					-0.0035259111327832215
QLDEDPELV	9	Unmodified	_QLDEDPELV_					0	0	0			REV__ENSG00000105298|ENST00000429344|CACTIN	REV__ENSG00000105298|ENST00000429344|CACTIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2972412109375	2	529.256037	1056.49752	-0.71863	-0.00038034	-2.0542	-0.0010872	-2.7728	-0.0014675	529.2548955900434	51.124	1.5319	50.975	50.561	52.093	-0.14916					79	43	2	0	0	0	0.019995	1	5542	5542		60.118	0	1	610740	+		62613	21510	44112	44174	67776	67776					-0.028468676184274955
QLDFFKRWRSY	11	Unmodified	_QLDFFKRWRSY_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.282470703125	3	515.936887	1544.78883	-0.65596	-0.00033844	-2.7547	-0.0014212	-3.4107	-0.0017597	516.2690785613986	65.321	0.33667	65.358	65.152	65.489	0.037384					14	9	2	0	0	0	0.024856	1	7649	7649		13.508	7.1871	1	216680			62614	3809	44113	44175	67777	67777					0.03822915537170957
QLDFLLAF	8	Unmodified	_QLDFLLAF_					0	0	0		ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2196350097656	2	483.768386	965.522219	-0.12619	-6.1046E-05	-2.7895	-0.0013495	-2.9157	-0.0014105	483.7663892199227	32.127	0.38478	31.969	31.694	32.079	-0.15772					13	8	2	0	0	0	0.027866	1	2185	2185		14.664	0	1	57193			62615	6875	44114	44176	67778	67778					0.03807857045626406
QLDGEILFSL	10	Unmodified	_QLDGEILFSL_					0	0	0		ENST00000466666.5_1_22:30689582-30690835:-|nuORF;ENST00000462073.5_1_22:30689736-30691829:-|nuORF;TBC1D10A|p.K472Rfs*22|1|0.17|ENSG00000099992|chr22:30292474-30292489|GGGGGCTGAGTCCTTC/-|frameshift_variant;TBC1D10A|p.P465Afs*35|1|0.1|ENSG00000099992|chr22:30292496-30292509|ACATGCTGTGGGGG/-|frameshift_variant;ENSG00000099992|ENST00000215790|TBC1D10A;nc|ENSG00000099992|Q9BXI6-2|TBC1D10A	ENST00000466666.5_1_22:30689582-30690835:-|nuORF	ENST00000466666.5_1_22:30689582-30690835:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7840576171875	2	567.805697	1133.59684	-0.49471	-0.0002809	0.85881	0.00048764	0.3641	0.00020674	567.8059678265264	44.89	0.55186	44.637	44.429	44.981	-0.25252					26	13	3	0	0	0	0.03519	1	4240	4240		37.812	8.662	1	318590			62616	2110	44115	44177	67779	67779					0.035385750663408544
QLDGYDIWET	10	Unmodified	_QLDGYDIWET_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.5594787597656	3	413.855787	1238.54553	-0.51278	-0.00021222	-1.7208	-0.00071217	-2.2336	-0.00092438	413.85483382302294	27.059	0.79985	26.817	26.45	27.249	-0.24217					38	18	3	0	0	0	0.03519	1	1436	1436		38.754	6.7195	1	416750			62617	8998	44116	44178	67780	67780					-0.06419793698387366
QLDHEVKEA	9	Unmodified	_QLDHEVKEA_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.3030395507812	2	534.769645	1067.52474	-0.53725	-0.0002873	0.088479	4.7316E-05	-0.44877	-0.00023999	534.7694189759804	45.938	0.4125	45.938	45.714	46.126	0					21	11	2	0	0	0	0.024495	1	4529	4529		26.693	0	1	1299600			62618	4256;18250	44117	44179	67781	67781					-0.006323392873810008
QLDHMNEEH	9	Unmodified	_QLDHMNEEH_					0	0	0			REV__nc|ENSG00000168077|Q6AZY7-2|SCARA3	REV__nc|ENSG00000168077|Q6AZY7-2|SCARA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8134155273438	2	576.740562	1151.46657	-1.0803	-0.00062303	-1.7917	-0.0010334	-2.872	-0.0016564	576.7393064077747	48.182	0.69567	47.906	47.561	48.257	-0.27598					31	18	3	0	0	0	0.024374	1	4691	4691		49.442	32.968	1	268050	+		62619	26229	44118	44180	67782	67782					-0.10310344204299327
QLDILMEPD	9	Unmodified	_QLDILMEPD_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3047485351562	2	537.262807	1072.51106	-0.28061	-0.00015076	2.2999	0.0012356	2.0192	0.0010849	537.2637840360131	68.908	0.49075	68.615	68.442	68.933	-0.29267					14	12	2	0	0	0	0.024447	1	8215	8215		13.454	0	1	217680	+		62620	24542	44119	44181	67783	67783					-0.02229333110835796
QLDLTHLKE	9	Unmodified	_QLDLTHLKE_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.L313Wfs*10|1|0.3|ENSG00000164163|chr4:145119941-145119941|T/-|frameshift_variant	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.8637084960938	2	548.803488	1095.59242	0.014996	8.2299E-06	-0.94761	-0.00052005	-0.93261	-0.00051182	548.802901743433	36.553	0.72116	36.336	36.088	36.809	-0.21661					19	17	2	0	0	0	0.024344	1	2885	2885		45.972	0	1	218960			62621	7228	44120	44182	67784	67784					0.04845110643418593
QLDMQILPD	9	Unmodified	_QLDMQILPD_					0	0	0		ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7981567382812	2	536.7708	1071.52705	-0.58672	-0.00031494	-1.1601	-0.00062272	-1.7468	-0.00093765	536.7706263855929	66.196	0.57495	65.917	65.6	66.175	-0.27959					19	14	2	0	0	0	0.018983	1	7859	7859		82.241	0	1	215230			62622	6211	44121	44183	67785	67785					-0.005856268739080406
QLDNATDLLK	10	Unmodified	_QLDNATDLLK_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8067016601562	2	565.806228	1129.5979	-0.33374	-0.00018883	1.009	0.00057088	0.67523	0.00038205	565.8067909053203	32.622	0.76284	32.464	32.163	32.926	-0.15772					33	18	2	0	0	0	1.0616	1	2250	2250		37.812	0	1	3514600			62623	10852	44122	44184	67786	67786					0.038287894352379226
QLDNIRSIL	9	Unmodified	_QLDNIRSIL_					0	0	0			REV__ENSG00000205078|ENST00000378644|SYCE1L	REV__ENSG00000205078|ENST00000378644|SYCE1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3118896484375	2	536.31148	1070.60841	0.59805	0.00032074	-0.10153	-5.4451E-05	0.49652	0.00026629	536.3114599438708	59.499	1.1573	59.299	58.708	59.866	-0.20016					83	29	4	0	0	0	0.28753	1	6785	6785		77.318	0	1	13592000	+		62624	28657	44123	44185	67787	67787					0.07592816880332975
QLDPSRMEGE	10	Unmodified	_QLDPSRMEGE_					0	0	0		ENST00000575500.5_2_17:78163648-78178987:+|nuORF	ENST00000575500.5_2_17:78163648-78178987:+|nuORF	ENST00000575500.5_2_17:78163648-78178987:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.819091796875	2	581.26387	1160.51319	-1.0016	-0.00058221	4.4263	0.0025728	3.4247	0.0019906	581.2664491769308	40.007	1.0026	39.782	39.184	40.187	-0.225					43	25	2	0	0	0	0.03519	1	3334	3334		45.972	22.45	1	192350			62625	17100	44124	44186	67788	67788					-0.060649043730336416
QLDQWLRA	8	Unmodified	_QLDQWLRA_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.293701171875	2	515.277441	1028.54033	-0.99965	-0.0005151	4.1897	0.0021589	3.1901	0.0016438	515.2792843989428	39.807	0.52179	39.695	39.534	40.055	-0.11223					21	13	2	0	0	0	0.027866	1	3491	3491		68.787	0.30212	1	456190			62626	4437	44125	44187	67789	67789					0.027199920203202055
QLDRELID	8	Unmodified	_QLDRELID_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2;DSC2|p.S308L|1|0.16|ENSG00000134755|chr18:31086595-31086595|G/A|missense_variant	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2534484863281	2	501.266739	1000.51892	-0.17105	-8.574E-05	4.1714	0.002091	4.0003	0.0020052	501.2670390425023	72.846	0.2126	72.846	72.74	72.952	0					7	4	2	0	0	0	0.027866	1	8868	8868		29.15	0	1	49162			62627	4823	44126	44188	67790	67790					0.01868562200957058
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.8035888671875	2	578.803488	1155.59242	-0.29893	-0.00017302	0.60593	0.00035071	0.307	0.00017769	578.8036096810239	59.033	1.1973	58.845	58.349	59.547	-0.18795					64	29	3	0	0	0	0.091713	2	6531	6519;6531		113.41	49.204	1	2072700			62628	9840	44127	44189	67791;67792	67792					0.02085110643452026
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.8041381835938	2	578.803488	1155.59242	-0.29811	-0.00017255	0.53496	0.00030963	0.23684	0.00013709	578.8035303221061	58.954	1.2017	58.773	58.347	59.549	-0.18134					67	29	4	0	0	0	0.067814	1	6511	6511		122.18	57.969	1	2306300			62629	9840	44127	44189	67793	67793					0.02085110643452026
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.8034057617188	2	578.803488	1155.59242	0.18613	0.00010773	0.013532	7.8324E-06	0.19966	0.00011556	578.8032639875049	59.095	1.237	58.853	58.341	59.578	-0.24165					75	30	4	0	0	0	0.1158	1	6512	6512		107.01	44.9	1	2329300			62630	9840	44127	44189	67794	67794					0.02085110643452026
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.803488	1155.59242	-0.61662	-0.0003569	0.37222	0.00021544	-0.2444	-0.00014146	578.8035887156956	58.586	0.69933	58.586	58.266	58.965	0	-0.12352	0.00036359	NaN	122.18	55	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2343300			62631	9840	44127	44189							0.02085110643452026
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	578.803488	1155.59242	0.4903	0.00028378	-0.66623	-0.00038562	-0.17594	-0.00010183	578.8029406035558	58.845	0.65535	58.658	58.386	59.042	-0.18705	-0.051694	-0.00083853	NaN	122.18	52	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2267400			62632	9840	44127	44189							0.02085110643452026
QLDRISVYY	9	Unmodified	_QLDRISVYY_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	578.803488	1155.59242	0.20694	0.00011978	-0.41416	-0.00023972	-0.20722	-0.00011994	578.8031689864326	58.452	0.66541	58.543	58.297	58.962	0.091217	-0.1667	-0.00054673	NaN	122.18	56	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2419800			62633	9840	44127	44189							0.02085110643452026
QLDRPFEDFI	10	Unmodified	_QLDRPFEDFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000573258.1_1_17:4719977-4720380:+|nuORF;ENST00000575246.6_1_17:4711576-4721404:+|nuORF	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7297668457031	3	427.215427	1278.62445	-0.22577	-9.6451E-05	3.6356	0.0015532	3.4098	0.0014567	427.21655622363676	29.236	0.72446	29.063	28.681	29.406	-0.17258					42	16	4	0	0	0	0.03519	1	1741	1741		32.751	0	1	476820			62634	4336	44128	44190	67795	67795					-0.0037152167342355824
QLDSAQKNLY	10	Unmodified	_QLDSAQKNLY_					0	0	0		nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000522017.5_1_X:46382546-46401540:-|nuORF;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.3038940429688	2	590.303852	1178.59315	-1.4648	-0.0008647	1.2417	0.00073299	-0.22313	-0.00013172	590.3045334643746	41.174	0.77018	40.944	40.624	41.394	-0.23029					40	19	3	0	0	0	0.14896	1	3607	3607		127.46	57.834	1	1285900			62635	5933	44129	44191	67796	67796					0.010999052924944408
QLDSAQKNLY	10	Unmodified	_QLDSAQKNLY_					0	0	0		nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000522017.5_1_X:46382546-46401540:-|nuORF;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	590.303852	1178.59315	-0.90649	-0.00053511	0.78497	0.00046337	-0.12152	-7.1733E-05	590.3042034329427	40.946	0.65373	40.81	40.561	41.215	-0.13553	-0.076974	-0.00023683	NaN	127.46	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1346700			62636	5933	44129	44191							0.010999052924944408
QLDSAQKNLY	10	Unmodified	_QLDSAQKNLY_					0	0	0		nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4;ENST00000522017.5_1_X:46382546-46401540:-|nuORF;ENST00000521626.5_1_X:46382546-46401540:-|nuORF;nc|ENSG00000147121|Q5JUW0-3|KRBOX4;ENST00000453909.3_1_X:46387515-46388371:-|nuORF;nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	590.303852	1178.59315	-1.0224	-0.00060356	0.65699	0.00038782	-0.36546	-0.00021573	590.3041534244786	41.136	0.54575	40.908	40.69	41.236	-0.2278	0.02069	-0.00038793	NaN	127.46	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1268600			62637	5933	44129	44191							0.010999052924944408
QLDTHMELY	9	Unmodified	_QLDTHMELY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.2659912109375	2	575.265881	1148.51721	-0.39091	-0.00022488	0.98665	0.00056759	0.59574	0.00034271	575.2662920673083	57.834	0.57355	57.656	57.358	57.932	-0.17775					40	14	4	0	0	0	0.028071	3	6325	6325;6334;6346		143.11	54.464	1	5037700			62638	4256;18250;18249	44130	44192	67797;67798;67799	67797					-0.05110814879276404
QLDTHMELY	9	Unmodified	_QLDTHMELY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.2654418945312	2	575.265881	1148.51721	-0.2242	-0.00012897	0.24318	0.00013989	0.018985	1.0921E-05	575.2659628639038	57.845	0.53894	57.654	57.332	57.871	-0.19018					46	13	5	0	0	0	0.028071	3	6339	6329;6339;6354		143.11	49.1	1	5817900			62639	4256;18250;18249	44130	44192	67800;67801;67802	67801					-0.05110814879276404
QLDTHMELY	9	Unmodified	_QLDTHMELY_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.2650146484375	2	575.265881	1148.51721	-0.43295	-0.00024906	1.0262	0.00059034	0.59326	0.00034128	575.2662430806967	57.92	0.50385	57.687	57.463	57.966	-0.23363					31	12	3	0	0	0	0.028071	3	6339	6330;6339;6352		143.11	49.1	1	4354900			62640	4256;18250;18249	44130	44192	67803;67804;67805	67804					-0.05110814879276404
QLDVLKEF	8	Unmodified	_QLDVLKEF_					0	0	0		ENST00000426530.2_1_11:47587445-47593178:+|nuORF;nc|ENSG00000110536|Q8WUK0-2|PTPMT1;ENST00000534775.1_1_11:47587445-47593178:+|nuORF;ENSG00000110536|ENST00000326674|PTPMT1	ENST00000426530.2_1_11:47587445-47593178:+|nuORF	ENST00000426530.2_1_11:47587445-47593178:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2660217285156	2	496.276575	990.538597	-0.22333	-0.00011083	0.15384	7.6346E-05	-0.06949	-3.4486E-05	496.2764803938622	86.98	1.0118	86.793	86.428	87.44	-0.18696					34	23	2	0	0	0	0.027866	1	10613	10613		17.365	0	1	292280			62641	3049	44131	44193	67806	67806					0.042949382117285495
QLEAALQKP	9	Unmodified	_QLEAALQKP_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27764892578125	2	499.287474	996.560395	-0.6603	-0.00032968	0.19612	9.7921E-05	-0.46418	-0.00023176	499.2874457244583	60.714	0.71587	60.501	60.196	60.912	-0.2134					32	18	2	0	0	0	0.024344	1	7025	7025		45.972	16.823	1	908610	+		62642	27860	44132	44194	67807	67807					0.06197742960284813
QLEAALQKP	9	Unmodified	_QLEAALQKP_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	499.287474	996.560395	-0.50111	-0.0002502	0.065539	3.2723E-05	-0.43557	-0.00021747	499.28736749600887	60.455	0.74057	60.455	60.104	60.845	0	-0.076309	-0.00045499	NaN	90.601	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	832870	+		62643	27860	44132	44194							0.06197742960284813
QLEAALQKP	9	Unmodified	_QLEAALQKP_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.287474	996.560395	-1.7951	-0.00089629	1.3791	0.00068857	-0.41603	-0.00020772	499.2879701131987	60.403	0.75074	60.482	60.088	60.839	0.078888	-0.049047	0.00085671	NaN	90.601	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1140700	+		62644	27860	44132	44194							0.06197742960284813
QLEAALQKP	9	Unmodified	_QLEAALQKP_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.287474	996.560395	-0.32487	-0.0001622	0.15073	7.5257E-05	-0.17414	-8.6945E-05	499.2873631246895	60.78	0.75549	60.574	60.213	60.968	-0.20599	0.042602	-0.00036993	NaN	90.601	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374850	+		62645	27860	44132	44194							0.06197742960284813
QLEAALQKP	9	Unmodified	_QLEAALQKP_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.287474	996.560395	-0.98118	-0.00048989	1.1765	0.00058742	0.19534	9.7528E-05	499.28750927047065	60.736	0.79904	60.56	60.198	60.997	-0.1761	0.02855	0.0006544	NaN	90.601	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316140	+		62646	27860	44132	44194							0.06197742960284813
QLEAALQKP	9	Unmodified	_QLEAALQKP_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.287474	996.560395	-1.0781	-0.00053827	0.76986	0.00038438	-0.30822	-0.00015389	499.2875216226001	60.87	0.67702	60.616	60.294	60.971	-0.25373	0.084876	0.00024832	NaN	90.601	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334740	+		62647	27860	44132	44194							0.06197742960284813
QLECVVLNRNS	11	Unmodified	_QLECVVLNRNS_					0	0	0		IGSF3|p.T844N|1|0.25|ENSG00000143061|chr1:116584962-116584962|G/T|missense_variant	IGSF3|p.T844N|1|0.25|ENSG00000143061|chr1:116584962-116584962|G/T|missense_variant	IGSF3|p.T844N|1|0.25|ENSG00000143061|chr1:116584962-116584962|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.2387390136719	3	425.555566	1273.64487	-0.31672	-0.00013478	-0.65785	-0.00027995	-0.97457	-0.00041473	425.5549670060102	22.276	0.33002	22.09	21.906	22.236	-0.18539					11	6	3	0	0	0	0.024767	1	743	743		19.627	0.36425	1	17166			62648	17760	44133	44195	67808	67808					0.018993257147485565
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;ENST00000399822.2_1_9:22012279-22012411:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENSG00000221983|ENST00000442744|UBA52	ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	648.8065795898438	2	648.806956	1295.59936	-2.5544	-0.0016573	2.3685	0.0015367	-0.18589	-0.00012061	648.8084821901433	47.204	1.1429	47.107	46.825	47.967	-0.096653					70	30	3	0	0	0	4.5684E-10	4	4600	4591;4600;4613;4626		209.73	100.25	1	7953700			62649	5702;10631	44134	44196	67809;67810;67811;67812	67810					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;ENST00000399822.2_1_9:22012279-22012411:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENSG00000221983|ENST00000442744|UBA52	ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	648.8070678710938	2	648.806956	1295.59936	0.44355	0.00028778	-0.74117	-0.00048088	-0.29763	-0.0001931	648.806437090537	47.549	1.0719	47.28	46.977	48.049	-0.26939					67	28	3	0	0	0	3.1219E-07	3	4647	4635;4647;4660		183.72	91.438	1	7879600			62650	5702;10631	44134	44196	67813;67814;67815	67814					-0.03661621266655857
QLEDGRTLSDY	11	Unmodified	_QLEDGRTLSDY_					0	0	0		ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000143947|ENST00000272317|RPS27A;ENST00000399822.2_1_9:22012279-22012411:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENSG00000221983|ENST00000442744|UBA52	ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	648.806396484375	2	648.806956	1295.59936	-0.69438	-0.00045052	0.20633	0.00013387	-0.48805	-0.00031665	648.8070736373954	47.328	1.1213	47.134	46.85	47.971	-0.19387					63	29	3	0	0	0	4.8747E-13	4	4617	4605;4617;4629;4644		218.94	114.89	1	8575800			62651	5702;10631	44134	44196	67816;67817;67818;67819	67817					-0.03661621266655857
QLEDSSFR	8	Unmodified	_QLEDSSFR_					0	0	0			REV__ENSG00000123908|ENST00000220592|AGO2	REV__ENSG00000123908|ENST00000220592|AGO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.8294677734375	2	491.235439	980.456324	-0.11508	-5.6533E-05	0.55119	0.00027077	0.43611	0.00021423	491.235461047058	25.878	0.2298	25.707	25.542	25.771	-0.17078					9	5	2	0	0	0	0.027866	1	1249	1249		68.787	15.435	1	77208	+		62652	22719	44135	44197	67820	67820					-0.03468583867220332
QLEEARQI	8	Unmodified	_QLEEARQI_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;PCNT|p.G1631Afs*11|1|0.39|ENSG00000160299|chr21:46401649-46401649|G/-|frameshift_variant	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7906494140625	2	493.766906	985.519259	-1.0189	-0.00050309	2.0892	0.0010316	1.0703	0.00052846	493.7677313835593	24.3	0.35264	24.253	24	24.353	-0.047148					11	7	2	0	0	0	0.027866	1	1036	1036		82.241	12.613	1	46231			62653	6803	44136	44198	67821	67821					0.025919819208070294
QLEELKNKMDN	11	Unmodified	_QLEELKNKMDN_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7144470214844	3	454.562498	1360.66566	-0.53526	-0.00024331	-2.7063	-0.0012302	-3.2415	-0.0014735	454.56126859847427	22.767	0.91476	22.841	22.559	23.474	0.073954					32	20	2	0	0	0	0.024723	1	773	773		17.167	0	1	148450	+		62654	21411	44137	44199	67822	67822					-0.0002412869625914027
QLEELLAR	8	Unmodified	_QLEELLAR_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.30865478515625	2	486.279649	970.544745	0.445	0.0002164	-0.78084	-0.00037971	-0.33584	-0.00016331	486.27914930169186	21.049	0.49094	20.853	20.582	21.073	-0.19577					19	9	3	0	0	0	0.027866	1	600	600		27.882	0	1	75977			62655	2409	44138	44200	67823	67823					0.05829456443234449
QLEEMKSR	8	Unmodified	_QLEEMKSR_					0	0	0		ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7287902832031	2	510.760766	1019.50698	-0.24364	-0.00012444	-3.7045	-0.0018921	-3.9481	-0.0020165	510.7590635062294	55.026	0.49044	54.876	54.641	55.132	-0.15036					26	13	3	0	0	0	0.027866	1	6027	6027		66.429	0	1	276990			62656	8192	44139	44201	67824	67824					-0.001993778138853486
QLEGILREL	9	Unmodified	_QLEGILREL_					0	0	0		ENSG00000205363|ENST00000569673|INSYN1	ENSG00000205363|ENST00000569673|INSYN1	ENSG00000205363|ENST00000569673|INSYN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7293090820312	2	535.813856	1069.61316	-0.14639	-7.8435E-05	-0.57152	-0.00030623	-0.71791	-0.00038466	535.8133919174212	59.918	0.68161	59.742	59.516	60.198	-0.1761					36	17	3	0	0	0	0.024319	1	6653	6653		39.253	0	1	543830			62657	10424	44140	44202	67825	67825					0.08113701023103204
QLEGTMPVL	9	Unmodified	_QLEGTMPVL_					0	0	0		ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.80316162109375	2	494.26261	986.510668	-0.25359	-0.00012534	-0.95698	-0.000473	-1.2106	-0.00059834	494.26211880816294	23.453	0.58405	23.273	23.067	23.651	-0.17989					25	13	3	0	0	0	0.024477	1	904	904		35.618	28.883	1	330240			62658	13644	44141	44203	67826	67826					0.016872919599791203
QLEGTMPVL	9	Unmodified	_QLEGTMPVL_					0	0	0		ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.26261	986.510668	-0.12509	-6.1826E-05	-6.5293	-0.0032272	-6.6543	-0.003289	494.25928747081093	23.128	0.29596	23.128	22.987	23.283	0	-0.056866	-0.002308	NaN	44.117	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27955			62659	13644	44141	44203							0.016872919599791203
QLEGTMPVL	9	Unmodified	_QLEGTMPVL_					0	0	0		ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.26261	986.510668	-0.40874	-0.00020203	-7.3414	-0.0036286	-7.7502	-0.0038306	494.2589494954421	23.13	0.39214	23.069	22.798	23.19	-0.06086	-0.11646	-0.0031109	NaN	44.117	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28130			62660	13644	44141	44203							0.016872919599791203
QLEGTMPVL	9	Unmodified	_QLEGTMPVL_					0	0	0		ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	ENST00000399410.7_1_16:16236079-16236175:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.26261	986.510668	-0.64359	-0.0003181	-6.0817	-0.0030059	-6.7253	-0.003324	494.2597629873963	23.024	0.44066	23.099	22.791	23.232	0.074385	-0.086641	-0.0018656	NaN	44.117	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35600			62661	13644	44141	44203							0.016872919599791203
QLEIFHLVMY	10	Oxidation (M)	_QLEIFHLVM(Oxidation (M))Y_		QLEIFHLVM(1)Y		QLEIFHLVM(85)Y	0	0	1		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.8815002441406	3	436.893408	1307.65839	0.44137	0.00019283	-2.6578	-0.0011612	-2.2164	-0.00096835	436.89271012635174	39.478	0.27482	39.478	39.254	39.529	0					14	7	3	0	0	0	0.03519	1	3397	3397		85.161	23.47	1	679180			62662	8003	44142	44204	67827	67827		335			0.016871834939820474
QLEIKTKFV	9	Unmodified	_QLEIKTKFV_					0	0	0			REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3322143554688	2	553.334424	1104.6543	-0.20591	-0.00011394	-3.4089	-0.0018862	-3.6148	-0.0020002	553.3323900913857	95.407	1.2671	95.407	95.007	96.274	0					99	29	5	0	0	0	0.87448	2	12135	12125;12135		34.173	2.6427	1	4511400	+		62663	31289	44143	44205	67828;67829	67829					0.10615462062560255
QLEIKTKFV	9	Unmodified	_QLEIKTKFV_					0	0	0			REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.3320922851562	2	553.334424	1104.6543	-0.076569	-4.2368E-05	-3.3934	-0.0018777	-3.4699	-0.00192	553.3323919260035	95.322	1.2671	95.325	94.957	96.224	0.0033798					89	29	4	0	0	0	0.96322	1	12118	12118		27.882	1.1893	1	4391700	+		62664	31289	44143	44205	67830	67830					0.10615462062560255
QLEIKTKFV	9	Unmodified	_QLEIKTKFV_					0	0	0			REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.3319091796875	2	553.334424	1104.6543	-0.10787	-5.9689E-05	-3.4609	-0.001915	-3.5688	-0.0019747	553.3323260230788	95.491	1.2442	95.354	94.938	96.182	-0.13689					88	28	5	0	0	0	0.85329	1	11797	11797		35.618	1.4457	1	4161900	+		62665	31289	44143	44205	67831	67831					0.10615462062560255
QLEIKTKFV	9	Unmodified	_QLEIKTKFV_					0	0	0			REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	REV__ENST00000374234.1_1_9:115449830-115480332:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.3323364257812	2	553.334424	1104.6543	-0.4027	-0.00022283	-3.2671	-0.0018078	-3.6698	-0.0020306	553.332456575769	95.559	1.4151	95.408	95.012	96.427	-0.15186					99	32	5	0	0	0	0.91321	1	11797	11797		31.53	1.2121	1	3966700	+		62666	31289	44143	44205	67832	67832					0.10615462062560255
QLEKERLQI	9	Unmodified	_QLEKERLQI_					0	0	0		ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.837890625	2	578.837862	1155.66117	-2.0428	-0.0011825	0.98521	0.00057028	-1.0576	-0.00061218	578.8386791905059	38.392	0.66352	38.392	38.134	38.797	0					48	17	4	0	0	0	0.041068	1	3227	3227		132.76	1.7265	1	3144900			62667	8091	44144	44206	67833	67833					0.08956774943135315
QLEKERLQI	9	Unmodified	_QLEKERLQI_					0	0	0		ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	578.837862	1155.66117	-1.0902	-0.00063102	0.58261	0.00033723	-0.50755	-0.00029379	578.8382340912161	38.514	0.33631	38.335	38.203	38.539	-0.17929	-0.056933	0.00012156	NaN	132.76	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89881			62668	8091	44144	44206							0.08956774943135315
QLEKERLQI	9	Unmodified	_QLEKERLQI_					0	0	0		ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.837862	1155.66117	-1.263	-0.00073109	0.45012	0.00026055	-0.81291	-0.00047054	578.8383725569942	38.558	0.38636	38.336	38.153	38.539	-0.22149	-0.055652	-3.1815E-05	NaN	132.76	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128270			62669	8091	44144	44206							0.08956774943135315
QLEKERLQI	9	Unmodified	_QLEKERLQI_					0	0	0		ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	578.837862	1155.66117	-0.6011	-0.00034794	-0.10725	-6.2078E-05	-0.70834	-0.00041001	578.8378291949168	38.607	0.38551	38.388	38.184	38.569	-0.21848	-0.0037577	-0.00067706	NaN	132.76	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127370			62670	8091	44144	44206							0.08956774943135315
QLEKETLMRV	10	Unmodified	_QLEKETLMRV_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2315979003906	3	416.232312	1245.67511	0.30325	0.00012622	-2.1153	-0.00088045	-1.812	-0.00075423	416.23147739627103	21.058	1.9295	20.863	20.385	22.315	-0.19577					110	39	6	0	0	0	1.0074	1	628	628		45.022	3.5956	1	2798600			62671	8653	44145	44207	67834	67834					0.06209684379928149
QLEKEVVRV	9	Unmodified	_QLEKEVVRV_					0	0	0		ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3	ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3	ENSG00000185668|ENST00000373012|POU3F1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2891235351562	2	550.327131	1098.63971	-0.71403	-0.00039295	-0.082392	-4.5343E-05	-0.79642	-0.00043829	550.3268895323702	48.24	0.39669	48.143	47.929	48.326	-0.097553					19	10	3	0	0	0	0.023239	1	4747	4747		74.255	12.148	1	276880			62672	9462;10247	44146	44208	67835	67835					0.09433389914420331
QLEKFDIKS	9	Unmodified	_QLEKFDIKS_					0	0	0		ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	ENSG00000139329|ENST00000266718|LUM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3055419921875	2	554.305864	1106.59717	-0.085714	-4.7512E-05	-0.086004	-4.7672E-05	-0.17172	-9.5184E-05	554.305693044405	43.741	0.98611	43.772	43.116	44.102	0.030827					80	26	5	0	0	0	0.26966	1	4075	4075		79.713	4.6693	1	3440700			62673	5326	44147	44209	67836	67836					0.048139947861727705
QLEKFSMKND	10	Unmodified	_QLEKFSMKND_					0	0	0			REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF	REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.8907470703125	3	413.872784	1238.59652	-0.045802	-1.8956E-05	-4.1391	-0.001713	-4.1849	-0.001732	413.87104917056683	21.509	0.48524	21.318	21.128	21.613	-0.19072					18	9	3	0	0	0	0.03519	1	648	648		32.034	0.39986	1	42909	+		62674	27911	44148	44210	67837	67837					-0.013231679251703099
QLELAYKL	8	Unmodified	_QLELAYKL_					0	0	0			REV__ENST00000539907.5_1_1:21835973-21889628:+|nuORF	REV__ENST00000539907.5_1_1:21835973-21889628:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2869567871094	2	489.286943	976.559333	0.59109	0.00028921	-0.99	-0.00048439	-0.3989	-0.00019518	489.28636273818836	63.478	1.2323	63.22	62.917	64.15	-0.25824					88	31	4	0	0	0	0.1848	1	7144	7144		143.02	4.7771	1	8215000	+		62675	25453	44149	44211	67838	67838					0.07011528591374372
QLELEFVQ	8	Unmodified	_QLELEFVQ_					0	0	0		MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant;ENST00000575519.1_1_17:6553649-6554890:-|nuORF;ENSG00000108590|ENST00000225728|MED31	MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant	MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.3073425292969	2	503.266207	1004.51786	-0.045975	-2.3137E-05	3.7033	0.0018638	3.6574	0.0018406	503.2676391831384	70.292	1.5617	70.042	68.658	70.22	-0.25063					54	37	2	0	0	0	0.027866	1	8081	8081		47.657	10.498	1	254020			62676	2915	44150	44212	67839	67839					0.01578347832048621
QLELEFVQ	8	Unmodified	_QLELEFVQ_					0	0	0		MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant;ENST00000575519.1_1_17:6553649-6554890:-|nuORF;ENSG00000108590|ENST00000225728|MED31	MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant	MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.266207	1004.51786	-0.27657	-0.00013919	4.7347	0.0023828	4.4581	0.0022436	503.2678170434108	70.385	1.4101	70.114	68.822	70.232	-0.27185	0.035585	0.00041011	NaN	47.657	56	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446410			62677	2915	44150	44212							0.01578347832048621
QLELEFVQ	8	Unmodified	_QLELEFVQ_					0	0	0		MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant;ENST00000575519.1_1_17:6553649-6554890:-|nuORF;ENSG00000108590|ENST00000225728|MED31	MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant	MED31|p.R17G|1|0.28|ENSG00000108590|chr17:6650413-6650413|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.266207	1004.51786	-0.18048	-9.0828E-05	6.1224	0.0030812	5.9419	0.0029903	503.26766732543285	70.293	1.3138	70.079	68.86	70.174	-0.21425	0.00090857	0.0018068	NaN	47.657	55	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257020			62678	2915	44150	44212							0.01578347832048621
QLENKLTQVTN	11	Unmodified	_QLENKLTQVTN_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	644.3497924804688	2	644.348791	1286.68303	0.27072	0.00017444	1.1574	0.00074577	1.4281	0.00092021	644.3494009474977	110.4	0.73016	110.41	110.11	110.84	0.0062943					57	20	4	0	0	0	1.0429	1	13905	13905		27.047	0	1	415830	+		62679	26616	44151	44213	67840	67840					0.051155349010286955
QLENYYFPVE	10	Unmodified	_QLENYYFPVE_					0	0	0			REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.8701477050781	3	434.539799	1300.59757	0.11775	5.1165E-05	-3.8133	-0.001657	-3.6955	-0.0016059	434.5377985276258	31.258	0.8599	31.105	30.597	31.456	-0.15231					28	21	2	0	0	0	0.03519	1	2047	2047		26.063	0	1	218520	+		62680	20701	44152	44214	67841	67841					-0.040706302846501785
QLENYYFPVE	10	Unmodified	_QLENYYFPVE_					0	0	0			REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	REV__nc|ENSG00000082684|Q9P283-3|SEMA5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	434.539799	1300.59757	-0.35626	-0.00015481	-8.6336	-0.0037516	-8.9898	-0.0039064	434.5359773818721	30.931	0.61543	30.752	30.453	31.069	-0.17817	-0.17642	-0.0025706	NaN	20.03	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95012	+		62681	20701	44152	44214							-0.040706302846501785
QLEPEFEE	8	Unmodified	_QLEPEFEE_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1;nc|ENSG00000106624|Q8IUX7-2|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7280578613281	2	510.729655	1019.44476	-0.05865	-2.9954E-05	-3.5179	-0.0017967	-3.5765	-0.0018266	510.7279174994541	54.997	1.1685	54.997	54.689	55.858	0					79	32	5	0	0	0	0.6248	1	6064	6064		73.975	13.003	1	7085500			62682	2802	44153	44215	67842	67842					-0.06418825681237195
QLEPTCLEYM	10	Unmodified	_QLEPTCLEYM_					0	0	0			REV__nc|ENSG00000101557|P54578-2|USP14	REV__nc|ENSG00000101557|P54578-2|USP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	409.5193176269531	3	409.519242	1225.5359	1.2326	0.00050479	-0.1584	-6.4866E-05	1.0742	0.00043992	409.519075444526	24.692	0.84858	24.77	24.364	25.213	0.078344					38	18	3	0	0	0	1.0997	1	1051	1051		32.751	3.1998	1	487210	+		62683	21242	44154	44216	67843	67843					-0.06785021299788241
QLEQEKFSAL	10	Unmodified	_QLEQEKFSAL_					0	0	0			REV__CTNND2|p.V55F|1|0.38|ENSG00000169862|chr5:11732147-11732147|C/A|missense_variant	REV__CTNND2|p.V55F|1|0.38|ENSG00000169862|chr5:11732147-11732147|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.2943725585938	2	596.814053	1191.61355	-0.30471	-0.00018186	-0.10394	-6.2036E-05	-0.40866	-0.00024389	596.8138699753573	53.009	0.74425	52.819	52.389	53.133	-0.18982					33	18	3	0	0	0	0.03519	1	5549	5549		30.318	1.1682	1	185480	+		62684	19625	44155	44217	67844	67844					0.02541075952308347
QLEQEMAKAGL	11	Unmodified	_QLEQEMAKAGL_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.587158203125	3	406.544667	1216.61217	0.52729	0.00021437	2.9073	0.001182	3.4346	0.0013963	406.8799826441388	25.221	0.37495	25.05	24.907	25.282	-0.17151					11	8	2	0	0	0	0.024799	1	1131	1131		42.338	10.704	1	76120			62685	6136	44156	44218	67845	67845					0.012531185918760457
QLEQEMAKAGL	11	Unmodified	_QLEQEMAKAGL_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	406.544667	1216.61217	0.42834	0.00017414	-0.63932	-0.00025991	-0.21098	-8.5771E-05	406.5442660807067	25.093	0.26066	25.093	24.874	25.135	0	0.021889	-2.0602E-05	NaN	42.338	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29570			62686	6136	44156	44218							0.012531185918760457
QLEQEMAKAGL	11	Unmodified	_QLEQEMAKAGL_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	406.544667	1216.61217	1.8055	0.00073401	-2.417	-0.0009826	-0.61149	-0.0002486	406.8789906179568	24.992	0.132	25.07	24.959	25.091	0.078344	-0.00097667	-0.0021887	NaN	42.338	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18415			62687	6136	44156	44218							0.012531185918760457
QLEQHHCL	8	Unmodified	_QLEQHHCL_					0	0	0			REV__ENST00000486498.1_1_2:171811278-171813015:+|nuORF	REV__ENST00000486498.1_1_2:171811278-171813015:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7818298339844	2	504.240001	1006.46545	0.13897	7.0074E-05	-2.0178	-0.0010175	-1.8788	-0.00094738	504.23895212171556	51.819	0.43686	51.7	51.468	51.904	-0.11875					18	11	2	0	0	0	0.027866	1	5381	5381		18.324	0	1	241430	+		62688	33595	44157	44219	67846	67846					-0.03752513782558253
QLEQLEKRV	9	Unmodified	_QLEQLEKRV_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.8297119140625	2	571.830037	1141.64552	-0.28322	-0.00016196	-0.29353	-0.00016785	-0.57675	-0.0003298	571.8298780270322	42.022	1.1812	41.89	41.528	42.709	-0.1322					105	33	5	0	0	0	0.015752	1	3812	3812		158.07	3.9562	1	9964300	+		62689	20113	44158	44220	67847	67847					0.080364884260689
QLEQLERQV	9	Unmodified	_QLEQLERQV_					0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.8297119140625	2	571.811845	1141.60914	-0.31529	-0.00018028	-2.5058	-0.0014329	-2.8211	-0.0016131	571.809969462216	41.972	0.20044	41.84	41.753	41.953	-0.13219					6	5	2	0	0	0	0.015197	1	3812	3812		154.12	5.1316	1	60281	+		62690	19221	44159	44221	67848	67848					0.04399611529356662
QLEQLKKEND	10	Unmodified	_QLEQLKKEND_					0	0	0		ENST00000511816.1_1_17:46928876-46929999:+|nuORF;ENST00000514006.1_1_17:46928486-46929999:+|nuORF;ENST00000509112.1_1_17:46928975-46930413:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2	ENST00000511816.1_1_17:46928876-46929999:+|nuORF	ENST00000511816.1_1_17:46928876-46929999:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.195068359375	3	415.55422	1243.64083	-0.33199	-0.00013796	4.3805	0.0018203	4.0485	0.0016824	415.55597777563986	39.915	0.65754	39.69	39.42	40.078	-0.225					26	16	2	0	0	0	0.03519	1	3365	3365		65.278	0	1	575860			62691	5016	44160	44222	67849	67849					0.028755594926451522
QLERKLIP	8	Unmodified	_QLERKLIP_					0	0	0		ENST00000500813.6_1_4:183811617-183811782:-|nuORF	ENST00000500813.6_1_4:183811617-183811782:-|nuORF	ENST00000500813.6_1_4:183811617-183811782:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.77032470703125	2	498.813659	995.612765	0.86044	0.0004292	-0.51309	-0.00025594	0.34735	0.00017326	498.81307821884377	65.88	0.72418	65.88	65.46	66.184	0					49	18	4	0	0	0	0.027866	1	7760	7760		60.118	17.722	1	1124700			62692	15649	44161	44223	67850	67850					0.114783260938907
QLESKEQEVQ	10	Unmodified	_QLESKEQEVQ_					0	0	0			REV__ENSG00000109061|ENST00000226207|MYH1	REV__ENSG00000109061|ENST00000226207|MYH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.7398376464844	3	406.538458	1216.59355	0.38678	0.00015724	1.3126	0.00053364	1.6994	0.00069087	406.538770550238	31.545	0.62537	31.36	31.023	31.649	-0.18503					37	15	4	0	0	0	0.03519	1	2117	2117		12.433	0	1	394840	+		62693	21775	44162	44224	67851	67851					-0.00608719778347222
QLETLHKALKL	11	Unmodified	_QLETLHKALKL_					0	0	0		CHN1|p.E381K|1|0.22|ENSG00000128656|chr2:174801774-174801774|C/T|missense_variant	CHN1|p.E381K|1|0.22|ENSG00000128656|chr2:174801774-174801774|C/T|missense_variant	CHN1|p.E381K|1|0.22|ENSG00000128656|chr2:174801774-174801774|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	647.398193359375	2	647.398087	1292.78162	1.3695	0.00088659	-2.362	-0.0015291	-0.99251	-0.00064255	647.396456514491	52.778	0.50778	52.63	52.366	52.873	-0.14723					42	12	4	0	0	0	0.9728	1	5645	5645		42.864	7.7122	1	1685800			62694	266	44163	44225	67852	67852					0.14694182936750622
QLEVFRLPL	9	Unmodified	_QLEVFRLPL_					0	0	0			REV__ENST00000493738.5_1_7:128354060-128363382:+|nuORF	REV__ENST00000493738.5_1_7:128354060-128363382:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.8328247070312	2	557.834591	1113.65463	-0.57163	-0.00031887	-3.1462	-0.001755	-3.7178	-0.0020739	557.8327748604498	39.411	0.98373	39.246	38.934	39.918	-0.16458					66	25	4	0	0	0	0.11092	1	3338	3338		108.09	4.0307	1	3364100	+		62695	23522	44164	44226	67853	67853					0.10234881782434968
QLEVKVLIYK	10	Unmodified	_QLEVKVLIYK_					0	0	0		ENST00000462710.5_1_1:24969817-24973316:+|nuORF	ENST00000462710.5_1_1:24969817-24973316:+|nuORF	ENST00000462710.5_1_1:24969817-24973316:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5633544921875	3	411.591946	1231.75401	-0.13543	-5.5743E-05	-2.1052	-0.00086648	-2.2406	-0.00092222	412.2606480730807	32.563	0.69585	32.405	31.991	32.687	-0.15772					33	16	4	0	0	0	0.03519	1	2266	2266		25.126	6.5949	1	289270			62696	14713	44165	44227	67854	67854					0.14740279676516366
QLEWAHLF	8	Unmodified	_QLEWAHLF_					0	0	0		ENST00000560518.1_1_15:52472905-52473223:+|nuORF	ENST00000560518.1_1_15:52472905-52473223:+|nuORF	ENST00000560518.1_1_15:52472905-52473223:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7700805664062	2	522.269084	1042.52362	1.273	0.00066484	-1.8671	-0.00097511	-0.59409	-0.00031027	522.2681855562644	17.006	0.30136	16.852	16.706	17.007	-0.15403					9	5	2	0	0	0	0.97924	1	138	138		40.573	11.423	1	34939			62697	16804	44166	44228	67855	67855					0.004054911343473577
QLFAEVLQ	8	Unmodified	_QLFAEVLQ_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2850646972656	2	474.263468	946.512382	0.45034	0.00021358	2.4207	0.0011481	2.8711	0.0013616	474.26508005111583	82.753	2.3019	82.753	82.449	84.751	0					72	53	2	0	0	0	0.027866	1	10419	10419		47.916	3.7988	1	572620	+		62698	22483	44167	44229	67856	67856					0.03698669040238656
QLFAEVLQ	8	Unmodified	_QLFAEVLQ_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	474.263468	946.512382	2.1297	0.00101	-1.3373	-0.00063422	0.79238	0.0003758	474.2627712335143	82.816	0.94379	82.706	82.294	83.238	-0.11006	-0.010003	-0.0012498	NaN	38.806	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565170	+		62699	22483	44167	44229							0.03698669040238656
QLFAEVLQ	8	Unmodified	_QLFAEVLQ_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	474.263468	946.512382	-0.16992	-8.0587E-05	1.2356	0.00058598	1.0656	0.00050539	474.2638453446218	82.662	0.89848	82.689	82.359	83.257	0.02655	-0.027264	0.0011906	NaN	38.806	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499880	+		62700	22483	44167	44229							0.03698669040238656
QLFAPGSL	8	Unmodified	_QLFAPGSL_					0	0	0			REV__nc|ENSG00000004777|O14559-11|ARHGAP33	REV__nc|ENSG00000004777|O14559-11|ARHGAP33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.5580139160156	2	416.731803	831.449054	-0.0034214	-1.4258E-06	-4.2557	-0.0017735	-4.2591	-0.0017749	416.72989602545647	24.65	0.4451	24.65	24.429	24.874	0					14	9	2	0	0	0	0.027866	1	1077	1077		24.203	15.971	1	147490	+		62701	19784	44168	44230	67857	67857					0.026587283229901004
QLFDERKTL	9	Unmodified	_QLFDERKTL_					0	0	0			REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.794921875	2	575.316763	1148.61897	0.16472	9.4767E-05	-3.337	-0.0019198	-3.1723	-0.0018251	575.3145443000619	63.996	0.43232	63.745	63.518	63.95	-0.25141					20	11	3	0	0	0	0.024288	1	7454	7454		44.377	10.205	1	444840	+		62702	31282	44169	44231	67858	67858					0.05060799534749094
QLFDERKTL	9	Unmodified	_QLFDERKTL_					0	0	0			REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	575.316763	1148.61897	-0.12552	-7.2213E-05	-11.2	-0.0064437	-11.326	-0.006516	575.3099227122874	63.861	1.0113	63.633	63.291	64.302	-0.22773	-0.094061	-0.0010967	NaN	58.23	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440640	+		62703	31282	44169	44231							0.05060799534749094
QLFDERKTL	9	Unmodified	_QLFDERKTL_					0	0	0			REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	575.316763	1148.61897	-0.28379	-0.00016327	-10.9	-0.0062707	-11.183	-0.006434	575.3101349841498	63.925	0.97038	63.733	63.263	64.234	-0.19243	0.0054364	-0.00075063	NaN	58.23	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443610	+		62704	31282	44169	44231							0.05060799534749094
QLFDERKTL	9	Unmodified	_QLFDERKTL_					0	0	0			REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	REV__ENST00000373991.3_1_20:34542651-34542879:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	575.316763	1148.61897	-0.15219	-8.7556E-05	-11.525	-0.0066305	-11.677	-0.0067181	575.3098706996622	63.991	0.91415	63.733	63.313	64.227	-0.25824	0.0054072	-0.0014702	NaN	58.23	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495500	+		62705	31282	44169	44231							0.05060799534749094
QLFEDLVYL	9	Unmodified	_QLFEDLVYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.3027954101562	2	570.30279	1138.59103	-0.40578	-0.00023142	0.22026	0.00012562	-0.18552	-0.0001058	570.3028219724029	99.245	1.2675	99.245	98.562	99.829	0					99	28	5	0	0	0	0.047345	6	12680	12664;12670;12680;12692;12704;12717		129.68	52.908	1	3152700			62706	163	44170	44232	67859;67860;67861;67862;67863;67864	67861					0.02727476554673558
QLFEDLVYL	9	Unmodified	_QLFEDLVYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.3025512695312	2	570.30279	1138.59103	0.042942	2.449E-05	-0.21393	-0.00012201	-0.17099	-9.7515E-05	570.3026134813938	99.209	1.4706	99.219	98.356	99.827	0.010239					131	33	5	0	0	0	0.15029	4	12639	12639;12651;12663;12675		99.375	25.12	1	2890600			62707	163	44170	44232	67865;67866;67867;67868	67865					0.02727476554673558
QLFEDLVYL	9	Unmodified	_QLFEDLVYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.3026123046875	2	570.30279	1138.59103	-0.25853	-0.00014744	0.042882	2.4456E-05	-0.21565	-0.00012298	570.3027749960777	99.326	1.4678	99.322	98.431	99.899	-0.0038834					113	33	5	0	0	0	0.082191	5	12605	12598;12605;12615;12627;12639		116.9	42.929	1	3002700			62708	163	44170	44232	67869;67870;67871;67872;67873	67870					0.02727476554673558
QLFEDLVYL	9	Unmodified	_QLFEDLVYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.3029174804688	2	570.30279	1138.59103	0.7405	0.00042231	-0.53782	-0.00030672	0.20268	0.00011559	570.3023893112485	99.188	1.6807	99.053	98.191	99.871	-0.13526					119	40	4	0	0	0	0.29158	2	12286	12286;12297		76.774	21.27	1	1167300			62709	163	44170	44232	67874;67875	67874					0.02727476554673558
QLFEDLVYL	9	Unmodified	_QLFEDLVYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.302734375	2	570.30279	1138.59103	1.076	0.00061362	-0.89098	-0.00050813	0.18498	0.0001055	570.3021865779501	99.167	1.6231	99.043	98.24	99.863	-0.12458					118	41	4	0	0	0	0.27161	4	12313	12292;12313;12321;12329		79.451	13.648	1	1439600			62710	163	44170	44232	67876;67877;67878;67879	67877					0.02727476554673558
QLFEDLVYL	9	Unmodified	_QLFEDLVYL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.302490234375	2	570.30279	1138.59103	0.043408	2.4756E-05	0.094109	5.3671E-05	0.13752	7.8427E-05	570.3027282595444	99.263	1.6227	99.095	98.24	99.863	-0.16862					123	39	5	0	0	0	0.29158	3	12298	12274;12286;12298		76.774	10.324	1	1337000			62711	163	44170	44232	67880;67881;67882	67882					0.02727476554673558
QLFEHQKEG	9	Unmodified	_QLFEHQKEG_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2510986328125	2	558.277638	1114.54072	-0.084418	-4.7129E-05	1.7265	0.00096386	1.6421	0.00091673	558.2777020392983	42.796	0.68934	42.796	42.497	43.186	0					27	18	2	0	0	0	0.0245	1	3979	3979		36.447	10.997	1	167180			62712	9585	44171	44233	67883	67883					-0.01196633050494711
QLFEHQKEG	9	Unmodified	_QLFEHQKEG_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.277638	1114.54072	-0.17533	-9.7884E-05	0.12214	6.8191E-05	-0.053187	-2.9693E-05	558.2774103636702	42.974	0.48882	42.862	42.693	43.182	-0.11253	-0.058173	-0.00078406	NaN	44.377	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365870			62713	9585	44171	44233							-0.01196633050494711
QLFEHQKEG	9	Unmodified	_QLFEHQKEG_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.277638	1114.54072	-0.32887	-0.0001836	0.73945	0.00041282	0.41058	0.00022922	558.2776685233115	43.173	0.41695	42.935	42.719	43.136	-0.23736	0.015345	-9.4803E-05	NaN	44.377	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373840			62714	9585	44171	44233							-0.01196633050494711
QLFEHQKEG	9	Unmodified	_QLFEHQKEG_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.277638	1114.54072	-0.90218	-0.00050367	1.0698	0.00059725	0.16763	9.3584E-05	558.2779283972229	43.256	0.37695	43.03	42.793	43.17	-0.22597	0.10978	0.00027406	NaN	44.377	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378860			62715	9585	44171	44233							-0.01196633050494711
QLFEMMKEE	9	Oxidation (M)	_QLFEM(Oxidation (M))MKEE_		QLFEM(0.776)M(0.224)KEE		QLFEM(5.4)M(-5.4)KEE	0	0	1			REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	600.8204956054688	2	600.7674	1199.52025	-1.755	-0.0010544	1.8303	0.0010996	0.0753	4.5238E-05	600.7683165994077	66.896	0.493	66.896	66.672	67.165	0					21	11	3	0	0	0	0.022704	1	7975	7975		112.41	10.81	2	418280	+		62716	25830	44172	44234	67884	67884		764			-0.07153307816793131
QLFEMMKEE	9	Oxidation (M)	_QLFEM(Oxidation (M))MKEE_		QLFEM(0.776)M(0.224)KEE		QLFEM(5.4)M(-5.4)KEE	0	0	1			REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	600.8201293945312	2	600.7674	1199.52025	-0.85447	-0.00051334	0.52662	0.00031638	-0.32785	-0.00019696	600.7677731147418	67.26	0.59813	66.971	66.749	67.347	-0.28834					23	14	2	0	0	0	0.022704	1	7988	7988		112.41	27.495	2	416350	+		62717	25830	44172	44234	67885	67885		764			-0.07153307816793131
QLFHPEQLI	9	Unmodified	_QLFHPEQLI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.8079833984375	2	562.808574	1123.60259	-0.32275	-0.00018165	-0.43338	-0.00024391	-0.75613	-0.00042556	562.8083429645101	68.333	0.8474	68.333	67.87	68.717	0					64	21	5	0	0	0	0.027092	2	8179	8179;8192		143.89	0	1	2702500			62718	3976;7700	44173	44235	67886;67887	67886					0.04573718368669688
QLFHPEQLI	9	Unmodified	_QLFHPEQLI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.8086547851562	2	562.808574	1123.60259	-0.095443	-5.3716E-05	-0.50975	-0.00028689	-0.60519	-0.00034061	562.8083259854809	68.642	0.77902	68.349	67.974	68.753	-0.29267					58	19	4	0	0	0	0.067814	2	8199	8199;8216		122.18	0	1	2736000			62719	3976;7700	44173	44235	67888;67889	67888					0.04573718368669688
QLFHPEQLI	9	Unmodified	_QLFHPEQLI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000183785|Q9NY65-2|TUBA8;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.808349609375	2	562.808574	1123.60259	-0.049171	-2.7674E-05	-0.39137	-0.00022027	-0.44054	-0.00024794	562.8083562555538	68.4	0.75356	68.419	68.08	68.833	0.018913					65	19	5	0	0	0	0.027092	2	8121	8108;8121		143.89	0	1	2863200			62720	3976;7700	44173	44235	67890;67891	67891					0.04573718368669688
QLFISVEKER	10	Unmodified	_QLFISVEKER_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.7327880859375	3	416.903072	1247.68739	-0.53345	-0.0002224	1.5191	0.00063332	0.98566	0.00041092	416.90365456016696	39.305	1.0988	39.082	38.755	39.854	-0.22311					61	28	3	0	0	0	0.03519	1	3328	3328		22.562	0	1	1004700	+		62721	20775;36023	44174	44236	67892	67892					0.07345044114595112
QLFKENIHG	9	Unmodified	_QLFKENIHG_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3184204101562	2	543.290548	1084.56654	-0.64095	-0.00034822	0.53843	0.00029252	-0.10252	-5.5699E-05	543.2907576518583	49.807	1.1391	49.807	49.039	50.178	0					63	31	3	0	0	0	0.024427	1	5205	5205		42.396	19.354	1	988990			62722	4942	44175	44237	67893	67893					0.027642611918054172
QLFKENIHG	9	Unmodified	_QLFKENIHG_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.290548	1084.56654	-1.4371	-0.00078075	1.4503	0.00078792	0.01319	7.1659E-06	543.2911688217386	49.7	0.9772	49.774	49.133	50.11	0.074196	-0.039727	0.00073287	NaN	34.173	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1061500			62723	4942	44175	44237							0.027642611918054172
QLFKNLQNK	9	Unmodified	_QLFKNLQNK_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8114013671875	2	566.827298	1131.64004	0.29123	0.00016508	-1.5982	-0.00090593	-1.307	-0.00074085	566.8260458521527	69.323	0.33215	69.077	68.828	69.16	-0.24632					10	7	2	0	0	0	0.024261	1	8056	8056		64.207	23.429	1	39848	+		62724	21813	44176	44238	67894	67894					0.07948809634262943
QLFLPLAGP	9	Unmodified	_QLFLPLAGP_					0	0	0			REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7977294921875	2	478.284203	954.553853	0.51832	0.0002479	-3.8027	-0.0018188	-3.2844	-0.0015709	478.2816631266698	50.212	0.82263	50.107	49.635	50.457	-0.10558					35	21	3	0	0	0	0.024517	1	5058	5058		19.36	0	1	504590	+		62725	32423	44177	44239	67895	67895					0.07475849799561729
QLFLPLAGP	9	Unmodified	_QLFLPLAGP_					0	0	0			REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	REV__ENST00000434568.5_1_22:19121711-19126708:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.79779052734375	2	478.284203	954.553853	0.46421	0.00022203	-3.9951	-0.0019108	-3.5308	-0.0016887	478.28178353302695	50.271	0.8168	50.091	49.717	50.534	-0.18071					34	21	3	0	0	0	0.024386	1	5065	5065		25.45	0	1	532530	+		62726	32423	44177	44239	67896	67896					0.07475849799561729
QLFQRPNAL	9	Unmodified	_QLFQRPNAL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;PUM1|p.Y732Lfs*2|1|0.09|ENSG00000134644|chr1:30964802-30964803|-/A|frameshift_variant	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2989501953125	2	543.806365	1085.59818	-1.0264	-0.00055818	0.25021	0.00013607	-0.77622	-0.00042211	543.8068330446441	53.629	0.76348	53.493	53.134	53.897	-0.13617					36	22	4	0	0	0	0.019502	1	5653	5653		87.754	2.5935	1	3645700			62727	4815	44178	44240	67897	67897					0.05880253945747427
QLFQRPNAL	9	Unmodified	_QLFQRPNAL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;PUM1|p.Y732Lfs*2|1|0.09|ENSG00000134644|chr1:30964802-30964803|-/A|frameshift_variant	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2980346679688	2	543.806365	1085.59818	-0.37322	-0.00020296	-0.090268	-4.9088E-05	-0.46348	-0.00025205	543.8064485468655	53.802	0.58723	53.556	53.275	53.862	-0.2453					29	17	3	0	0	0	0.02435	1	5675	5675		42.396	10.441	1	3245500			62728	4815	44178	44240	67898	67898					0.05880253945747427
QLFQRPNAL	9	Unmodified	_QLFQRPNAL_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;PUM1|p.Y732Lfs*2|1|0.09|ENSG00000134644|chr1:30964802-30964803|-/A|frameshift_variant	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2990112304688	2	543.806365	1085.59818	-0.91344	-0.00049674	0.35339	0.00019218	-0.56005	-0.00030456	543.8067247375642	53.718	0.55133	53.52	53.275	53.827	-0.19739					28	16	3	0	0	0	0.021088	1	5653	5653		102.77	20.533	1	3002900			62729	4815	44178	44240	67899	67899					0.05880253945747427
QLFQSWGL	8	Unmodified	_QLFQSWGL_					0	0	0		ENST00000302351.8_1_5:73923668-73923869:-|nuORF	ENST00000302351.8_1_5:73923668-73923869:-|nuORF	ENST00000302351.8_1_5:73923668-73923869:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2928466796875	2	489.75581	977.497067	-0.28565	-0.0001399	-3.8308	-0.0018762	-4.1165	-0.0020161	489.754117193328	37.403	0.50256	37.21	36.966	37.469	-0.193					16	12	2	0	0	0	0.027866	1	2996	2996		39.253	7.298	1	118360			62730	11952	44179	44241	67900	67900					0.007418022430556448
QLFVSSIGLA	10	Unmodified	_QLFVSSIGLA_					0	0	0			REV__ENSG00000170819|ENST00000302334|BFSP2	REV__ENSG00000170819|ENST00000302334|BFSP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.78857421875	2	517.797675	1033.5808	-0.73554	-0.00038086	2.702	0.0013991	1.9665	0.0010182	517.7988589136164	53.715	0.91077	53.568	52.873	53.784	-0.14724					36	24	2	0	0	0	0.03519	1	5783	5783		26.693	4.733	1	189850	+		62731	26509	44180	44242	67901	67901					0.06534913620112093
QLFYLNAL	8	Unmodified	_QLFYLNAL_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.24298095703125	2	491.273835	980.533118	-0.89221	-0.00043832	1.3679	0.00067201	0.47568	0.00023369	491.2774099680451	37.856	0.65087	37.637	37.104	37.755	-0.21848					44	16	4	0	0	0	0.027866	1	2999	2999		31.955	19.748	1	231170			62732	5846	44181	44243	67902	67902					0.04207259419899856
QLGAAARAAR	10	Unmodified	_QLGAAARAAR_					0	0	0			REV__ENSG00000069998|ENST00000336737|HDHD5	REV__ENSG00000069998|ENST00000336737|HDHD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2434997558594	2	492.788507	983.562461	-0.61763	-0.00030436	2.4873	0.0012257	1.8697	0.00092136	492.78932790515717	37.66	0.52144	37.66	37.414	37.936	0					18	14	2	0	0	0	0.03519	1	3080	3080		39.253	18.306	1	356100	+		62733	20411	44182	44244	67903	67903					0.07002216488729118
QLGAHRGRPPC	11	Unmodified	_QLGAHRGRPPC_					0	0	0			REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.7921142578125	2	596.311823	1190.60909	-0.74849	-0.00044633	-0.35162	-0.00020968	-1.1001	-0.00065601	596.3116549712828	66.356	0.424	66.111	65.891	66.315	-0.24517					27	10	4	0	0	0	0.024765	1	7572	7572		41.427	6.2259	1	179590	+		62734	32805	44183	44245	67904	67904					0.021413330483937898
QLGAHRGRPPC	11	Unmodified	_QLGAHRGRPPC_					0	0	0			REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	596.311823	1190.60909	-0.82997	-0.00049492	0.82761	0.00049351	-0.0023678	-1.412E-06	596.3124014217004	66.029	0.38448	66.029	65.799	66.184	0	-0.076052	0.00079946	NaN	41.427	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183500	+		62735	32805	44183	44245							0.021413330483937898
QLGAHRGRPPC	11	Unmodified	_QLGAHRGRPPC_					0	0	0			REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	596.311823	1190.60909	-0.88146	-0.00052563	0.12365	7.3732E-05	-0.75781	-0.00045189	596.3116578318109	66.345	0.38647	66.063	65.826	66.213	-0.28149	-0.041585	-4.0101E-05	NaN	41.427	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128790	+		62736	32805	44183	44245							0.021413330483937898
QLGAHRGRPPC	11	Unmodified	_QLGAHRGRPPC_					0	0	0			REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	REV__ENST00000457336.1_1_2:113402667-113403246:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	596.311823	1190.60909	-0.55453	-0.00033067	0.40834	0.0002435	-0.14619	-8.7176E-05	596.3115526335681	66.131	0.30684	66.162	65.89	66.197	0.030106	0.056704	0.00029943	NaN	41.427	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118250	+		62737	32805	44183	44245							0.021413330483937898
QLGEQGCYL	9	Carbamidomethyl (C)	_QLGEQGC(Carbamidomethyl (C))YL_	QLGEQGC(1)YL		QLGEQGC(93)YL		0	1	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2464599609375	2	534.244949	1066.47534	-0.64236	-0.00034318	3.5397	0.0018911	2.8974	0.0015479	534.2467369123614	34.441	1.4941	34.437	34.152	35.646	-0.0045624					91	38	5	0	0	0	0.17822	1	2559	2559		93.195	13.744	1	6365600	+		62738	24003	44184	44246	67905	67905	313				-0.05523370567857455
QLGFIHRDI	9	Unmodified	_QLGFIHRDI_					0	0	0		nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38	nc|ENSG00000211455|Q9Y2H1-2|STK38L	nc|ENSG00000211455|Q9Y2H1-2|STK38L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2955932617188	2	549.806365	1097.59818	-0.52331	-0.00028772	2.6189	0.0014399	2.0955	0.0011521	549.8077129049653	95.754	0.47267	95.754	95.519	95.991	0					17	10	2	0	0	0	0.024495	1	12226	12226		14.137	3.2716	1	71170			62739	3169	44185	44247	67906	67906					0.053282539457541134
QLGFIHRDI	9	Unmodified	_QLGFIHRDI_					0	0	0		nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38	nc|ENSG00000211455|Q9Y2H1-2|STK38L	nc|ENSG00000211455|Q9Y2H1-2|STK38L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	549.806365	1097.59818	0.13007	7.1516E-05	2.0404	0.0011218	2.1705	0.0011934	549.8073831934495	95.74	0.42897	95.742	95.524	95.953	0.0020752	0.026515	-0.00027102	NaN	14.137	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52911			62740	3169	44185	44247							0.053282539457541134
QLGGPPSPT	9	Unmodified	_QLGGPPSPT_					0	0	0			REV__ENST00000382361.7_1_7:5645159-5645399:+|nuORF	REV__ENST00000382361.7_1_7:5645159-5645399:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.27130126953125	2	427.224342	852.434132	0.062326	2.6627E-05	1.3504	0.00057694	1.4128	0.00060357	427.22483966882606	39.588	0.6276	39.588	39.323	39.951	0					38	17	3	0	0	0	0.024436	1	3406	3406		30.504	0	1	107050	+		62741	31542	44186	44248	67907	67907					0.0020123645499552367
QLGIVNKGE	9	Unmodified	_QLGIVNKGE_					0	0	0			REV__ENST00000478033.1_1_1:159888592-159888742:-|nuORF	REV__ENST00000478033.1_1_1:159888592-159888742:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8970947265625	2	479.271824	956.529095	-0.20084	-9.6258E-05	-4.023	-0.0019281	-4.2238	-0.0020244	479.2694490207952	31.976	0.38353	31.819	31.651	32.035	-0.15772					10	8	2	0	0	0	0.024405	1	2178	2178		20.947	0	1	38349	+		62742	25212	44187	44249	67908	67908					0.049091699261907706
QLGKPQAP	8	Unmodified	_QLGKPQAP_					0	0	0			REV__ENST00000497914.5_1_7:43915744-43915975:-|nuORF	REV__ENST00000497914.5_1_7:43915744-43915975:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2279357910156	2	419.742702	837.470852	0.38043	0.00015968	-0.12091	-5.0752E-05	0.25952	0.00010893	419.742568718822	25.698	0.34157	25.779	25.581	25.922	0.08009					11	7	2	0	0	0	0.027866	1	1187	1187		52.299	7.7681	1	62356	+		62743	33863	44188	44250	67909	67909					0.04561533071557733
QLGKSNRF	8	Unmodified	_QLGKSNRF_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.25384521484375	2	475.264333	948.514114	-0.53483	-0.00025418	0.51364	0.00024411	-0.021187	-1.0069E-05	475.2644193247732	26.811	0.39228	26.892	26.671	27.064	0.081291					14	9	2	0	0	0	0.027866	1	1360	1360		18.324	6.8134	1	75055			62744	1492	44189	44251	67910	67910					0.037797228488557266
QLGKSREP	8	Unmodified	_QLGKSREP_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-7|USP54	REV__nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.25531005859375	2	457.756341	913.498129	-0.30544	-0.00013982	-1.6436	-0.00075237	-1.949	-0.00089218	457.75606310955686	20.787	2.3559	20.682	19.932	22.287	-0.10477					122	48	5	0	0	0	1.0009	1	601	601		37.159	3.6435	1	10305000	+		62745	26005	44190	44252	67911	67911					0.03792016611953386
QLGLAIKKF	9	Unmodified	_QLGLAIKKF_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.3262634277344	2	509.326402	1016.63825	0.26185	0.00013337	-0.32203	-0.00016402	-0.060175	-3.0649E-05	509.32604351936726	56.786	0.83481	56.561	56.269	57.104	-0.2248					54	21	4	0	0	0	0.22754	1	6154	6154		85.359	0	1	3021300			62746	9118	44191	44253	67912	67912					0.1305980061632681
QLGLQRHR	8	Unmodified	_QLGLQRHR_					0	0	0			REV__ENSG00000149328|ENST00000535456|GLB1L2	REV__ENSG00000149328|ENST00000535456|GLB1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.76678466796875	2	504.296499	1006.57845	0.040436	2.0392E-05	2.8976	0.0014612	2.938	0.0014816	504.29741281713837	63.702	0.96882	63.444	62.706	63.675	-0.25824					33	24	2	0	0	0	0.027866	1	7197	7197		31.955	1.4512	1	152930	+		62747	24672	44192	44254	67913	67913					0.0754192272564751
QLGLVIVDAN	10	Unmodified	_QLGLVIVDAN_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2906494140625	2	521.300581	1040.58661	-0.15427	-8.042E-05	3.9902	0.0020801	3.8359	0.0019997	521.3024899840291	74.478	0.76242	74.202	73.958	74.72	-0.27573					35	17	3	0	0	0	0.03519	1	8831	8831		17.468	4.014	1	721130	+		62748	26323	44193	44255	67914	67914					0.06794012131740601
QLGLVIVDAN	10	Unmodified	_QLGLVIVDAN_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.300581	1040.58661	0.50086	0.0002611	3.3767	0.0017603	3.8776	0.0020214	521.3021330081871	74.471	0.76583	74.208	73.966	74.732	-0.26326	0.053914	-0.00022713	NaN	17.468	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581710	+		62749	26323	44193	44255							0.06794012131740601
QLGLVIVDAN	10	Unmodified	_QLGLVIVDAN_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.300581	1040.58661	0.60403	0.00031488	3.3511	0.0017469	3.9551	0.0020618	521.302202699806	74.235	0.68579	74.053	73.827	74.513	-0.18279	-0.10159	-0.00025391	NaN	17.468	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688260	+		62750	26323	44193	44255							0.06794012131740601
QLGMSTIKV	9	Unmodified	_QLGMSTIKV_					0	0	0			REV__ENST00000493021.5_1_2:162567177-162757603:+|nuORF	REV__ENST00000493021.5_1_2:162567177-162757603:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7773132324219	2	488.778428	975.542302	-0.24308	-0.00011881	-2.8209	-0.0013788	-3.0639	-0.0014976	488.77687860213143	61.501	0.72087	61.572	60.985	61.706	0.071125					40	18	3	0	0	0	0.45795	1	7023	7023		62.107	6.6032	1	3511600	+		62751	33753	44194	44256	67915	67915					0.05355284713925812
QLGPLFRCFE	10	Unmodified	_QLGPLFRCFE_					0	0	0		XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant;ENSG00000047597|ENST00000378616|XK	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.19549560546875	3	403.874348	1208.60121	0.52482	0.00021196	-3.6984	-0.0014937	-3.1736	-0.0012817	403.87277079852635	34.096	0.58471	34.091	33.829	34.414	-0.0045624					25	14	2	0	0	0	0.03519	1	2465	2465		24.232	6.3987	1	109880			62752	1105	44195	44257	67916	67916					0.005257610082480824
QLGPLFRCFE	10	Unmodified	_QLGPLFRCFE_					0	0	0		XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant;ENSG00000047597|ENST00000378616|XK	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	403.874348	1208.60121	0.85301	0.00034451	-4.3273	-0.0017477	-3.4743	-0.0014032	403.8725845283602	34.38	0.53968	34.38	34.05	34.59	0	0.13892	-0.00033539	NaN	24.232	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88829			62753	1105	44195	44257							0.005257610082480824
QLGPLFRCFE	10	Unmodified	_QLGPLFRCFE_					0	0	0		XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant;ENSG00000047597|ENST00000378616|XK	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	403.874348	1208.60121	1.3645	0.00055108	-4.317	-0.0017435	-2.9525	-0.0011924	403.8724231779279	34.201	0.52023	34.251	33.884	34.404	0.050255	0.010536	-0.00032282	NaN	24.232	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80507			62754	1105	44195	44257							0.005257610082480824
QLGPQAVAR	9	Unmodified	_QLGPQAVAR_					0	0	0			REV__nc|ENSG00000169231|P49746-2|THBS3	REV__nc|ENSG00000169231|P49746-2|THBS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.2425842285156	2	470.272158	938.529764	-0.34514	-0.00016231	0.93422	0.00043934	0.58909	0.00027703	470.2727953448704	83.423	0.72252	83.285	82.824	83.547	-0.1386					20	16	2	0	0	0	0.024457	1	9993	9993		15.642	0	1	39610	+		62755	26339	44196	44258	67917	67917					0.058040093658974
QLGRARPQ	8	Unmodified	_QLGRARPQ_					0	0	0			REV__ENSG00000235194|ENST00000452015|PPP1R3E	REV__ENSG00000235194|ENST00000452015|PPP1R3E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.258544921875	2	463.26995	924.525347	-0.93457	-0.00043296	0.8196	0.0003797	-0.11497	-5.3261E-05	463.2701631729114	21.184	0.49209	21.184	20.85	21.342	0					15	9	2	0	0	0	0.027866	1	644	644		25.45	8.977	1	163130	+		62756	28925	44197	44259	67918	67918					0.06006544942988512
QLGRARPQ	8	Unmodified	_QLGRARPQ_					0	0	0			REV__ENSG00000235194|ENST00000452015|PPP1R3E	REV__ENSG00000235194|ENST00000452015|PPP1R3E	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.26995	924.525347	-0.35364	-0.00016383	0.096965	4.4921E-05	-0.25668	-0.00011891	463.2698581591094	21.273	0.49108	21.183	20.863	21.354	-0.090092	-0.041437	-7.8576E-05	NaN	25.45	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184880	+		62757	28925	44197	44259							0.06006544942988512
QLGRKQTGL	9	Unmodified	_QLGRKQTGL_					0	0	0			REV__ENST00000490812.5_1_2:131128247-131129758:+|nuORF	REV__ENST00000490812.5_1_2:131128247-131129758:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.79400634765625	2	500.79854	999.582528	0.092124	4.6136E-05	-1.4605	-0.00073144	-1.3684	-0.0006853	500.7976672712921	93.327	0.29526	93.327	93.219	93.515	0					14	6	4	0	0	0	0.024436	1	11854	11854		16.473	0	1	884040	+		62758	33711	44198	44260	67919	67919					0.08271967428709104
QLGVKLRNL	9	Unmodified	_QLGVKLRNL_					0	0	0			REV__HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	REV__HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.833984375	2	520.832383	1039.65021	-1.5014	-0.00078199	1.1304	0.00058877	-0.37099	-0.00019322	520.8328670441073	20.861	0.82493	20.861	20.468	21.293	0					43	16	4	0	0	0	0.4752	1	584	584		60.972	2.19	1	424590	+		62759	24330	44199	44261	67920	67920					0.13197417359515384
QLGWAILLL	9	Unmodified	_QLGWAILLL_					0	0	0			REV__ENSG00000171823|ENST00000339235|FBXL14	REV__ENSG00000171823|ENST00000339235|FBXL14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8030395507812	2	513.820953	1025.62735	-0.15392	-7.9087E-05	-1.947	-0.0010004	-2.1009	-0.0010795	513.8200858689365	68.511	0.97246	68.53	68.276	69.249	0.018921					34	25	2	0	0	0	0.024466	1	8203	8203		33.516	14.156	1	398650	+		62760	26607	44200	44262	67921	67921					0.11556398242055366
QLGWIYKN	8	Unmodified	_QLGWIYKN_					0	0	0			REV__nc|ENSG00000185684|Q6ZTU2-2|EP400P1	REV__nc|ENSG00000185684|Q6ZTU2-2|EP400P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.79718017578125	2	511.276909	1020.53927	-1.0587	-0.00054128	0.80868	0.00041346	-0.25001	-0.00012783	511.2774867306812	60.878	0.438	60.702	60.559	60.997	-0.1761					17	10	2	0	0	0	0.027866	1	6818	6818		33.516	16.151	1	108430	+		62761	37017	44201	44263	67922	67922					0.02981777651405082
QLGWLNEIS	9	Unmodified	_QLGWLNEIS_					0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3113403320312	2	530.277106	1058.53966	-0.34876	-0.00018494	0.025159	1.3341E-05	-0.3236	-0.0001716	530.2769647824574	56.701	0.61977	56.799	56.51	57.13	0.097897					40	17	3	0	0	0	0.024457	1	6284	6284		37.159	5.2042	1	1904500	+		62762	21731	44202	44264	67923	67923					0.012731525806202626
QLGYPPAR	8	Unmodified	_QLGYPPAR_					0	0	0		nc|ENSG00000137070|Q14626-2|IL11RA;ENSG00000137070|ENST00000441545|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.26434326171875	2	451.248152	900.481751	0.029312	1.3227E-05	-2.842	-0.0012824	-2.8126	-0.0012692	451.2468223941351	33.128	0.2855	32.897	32.711	32.997	-0.23107					8	6	2	0	0	0	0.027866	1	2340	2340		24.203	0	1	48444			62763	5084	44203	44265	67924	67924					0.027529354458465605
QLHCSQIDL	9	Unmodified	_QLHCSQIDL_					0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|134|3|anti-sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|134|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2841796875	2	528.760766	1055.50698	-0.3918	-0.00020717	3.0353	0.001605	2.6435	0.0013978	529.2622885703432	87.131	0.58784	87.131	86.69	87.278	0					15	13	2	0	0	0	0.023061	1	10953	10953		90.37	0	1	41684	+		62764	19448	44204	44266	67925	67925					-0.018553778138993948
QLHILAPIS	9	Unmodified	_QLHILAPIS_					0	0	0		ENST00000283206.8_1_2:112812867-112812969:+|nuORF	ENST00000283206.8_1_2:112812867-112812969:+|nuORF	ENST00000283206.8_1_2:112812867-112812969:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2843017578125	2	496.300384	990.586216	0.02662	1.3211E-05	-0.28139	-0.00013965	-0.25477	-0.00012644	496.30015097247497	49.482	0.56838	49.301	49.002	49.57	-0.18071					33	14	3	0	0	0	0.024323	1	4961	4961		14.865	0	1	1099300			62765	11733	44205	44267	67926	67926					0.0905463720255284
QLHKKQRL	8	Unmodified	_QLHKKQRL_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.8302612304688	2	525.830175	1049.6458	1.172	0.00061629	-1.2291	-0.0006463	-0.05707	-3.0009E-05	525.829443678849	17.287	0.35154	17.133	16.957	17.308	-0.15403					17	6	3	0	0	0	0.99042	1	161	161		38.806	0	1	429730			62766	3792	44206	44268	67927	67927					0.12295952936597132
QLHKLVVL	8	Unmodified	_QLHKLVVL_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENST00000481318.1_1_14:104516214-104518416:+|nuORF	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2909851074219	2	475.313295	948.612037	0.79765	0.00037913	-0.78743	-0.00037427	0.010225	4.8602E-06	475.3127479881452	19.023	0.49482	18.862	18.589	19.084	-0.1608					16	9	3	0	0	0	0.027866	1	374	374		37.028	8.7742	1	74056			62767	6526	44207	44269	67928	67928					0.1356753144484628
QLHLACLCLAQ	11	Unmodified	_QLHLACLCLAQ_					0	0	0		nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-2|SLC6A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9228515625	3	404.879104	1211.61548	0.52358	0.00021199	1.7337	0.00070195	2.2573	0.00091393	404.87959832718417	26.304	0.10121	26.136	26.052	26.153	-0.16816					4	2	2	0	0	0	0.024723	1	1336	1336		17.167	3.0807	1	69521			62768	18269	44208	44270	67929	67929					0.01814090164884874
QLHQRRMQS	9	Unmodified	_QLHQRRMQS_					0	0	0		ENSG00000099994|ENST00000358321|SUSD2;ENST00000463101.1_1_22:24583504-24584401:+|nuORF	ENSG00000099994|ENST00000358321|SUSD2	ENSG00000099994|ENST00000358321|SUSD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.2876586914062	2	592.309281	1182.60401	-0.76094	-0.00045071	1.7765	0.0010522	1.0155	0.00060151	592.3103336252819	72.974	0.38757	72.697	72.497	72.884	-0.2769					15	8	3	0	0	0	0.024511	1	8565	8565		13.454	5.219	1	185920			62769	2111	44209	44271	67930	67930					0.020010291857715856
QLHTLGDL	8	Unmodified	_QLHTLGDL_					0	0	0		ENSG00000057663|ENST00000369076|ATG5;nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENST00000476518.1_1_6:106649790-106727677:-|nuORF	ENSG00000057663|ENST00000369076|ATG5	ENSG00000057663|ENST00000369076|ATG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2530212402344	2	448.745442	895.476331	-1.0965	-0.00049203	0.83287	0.00037375	-0.26358	-0.00011828	448.74576419894515	25.943	0.32135	25.779	25.544	25.865	-0.16331					11	7	2	0	0	0	0.027866	1	1231	1231		7.6903	0	1	100530			62770	1205	44210	44272	67931	67931					0.024412118633676982
QLHWETSP	8	Unmodified	_QLHWETSP_					0	0	0		THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant;ENSG00000144229|ENST00000409968|THSD7B	THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant	THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7715759277344	2	499.240524	996.466495	-1.1109	-0.00055459	-3.0964	-0.0015459	-4.2073	-0.0021004	499.2401120002385	28.448	0.40481	28.203	28.001	28.406	-0.24524					15	9	2	0	0	0	0.027866	1	1678	1678		20.947	8.7401	1	141010			62771	5722	44211	44273	67932	67932					-0.03187976141998661
QLHWRRWKRRL	11	Unmodified	_QLHWRRWKRRL_					0	0	0			REV__nc|ENSG00000114812|P32241-4|VIPR1	REV__nc|ENSG00000114812|P32241-4|VIPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.3286743164062	3	545.658681	1633.95422	-0.62647	-0.00034184	2.5428	0.0013875	1.9163	0.0010457	545.6606627354612	104.52	1.595	104.52	103.62	105.21	-0.0015945					89	44	3	0	0	0	1.1135	1	13381	13381		3.2113	1.6883	1	77862	+		62772	22147	44212	44274	67933	67933					0.16259611907321414
QLHWRRWKRRL	11	Unmodified	_QLHWRRWKRRL_					0	0	0			REV__nc|ENSG00000114812|P32241-4|VIPR1	REV__nc|ENSG00000114812|P32241-4|VIPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.3104248046875	3	545.658681	1633.95422	-0.5818	-0.00031746	3.7875	0.0020667	3.2057	0.0017492	545.6607062858317	103.62	0.62199	103.62	103.31	103.94	-0.0032196					21	14	2	0	0	0	0.024898	1	13182	13182		1.3219	0	1	41736	+		62773	22147	44212	44274	67934	67934					0.16259611907321414
QLHYKHSEN	9	Unmodified	_QLHYKHSEN_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.8064575195312	2	578.280712	1154.54687	-0.97027	-0.00056109	1.8273	0.0010567	0.85702	0.0004956	578.7842376928013	35.219	0.42873	35.007	34.725	35.154	-0.21246					22	10	3	0	0	0	0.024523	1	2633	2633		10.265	0	1	229430			62774	143	44213	44275	67935	67935					-0.024221148189326414
QLIDIIHTA	9	Unmodified	_QLIDIIHTA_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2955932617188	2	512.295299	1022.57605	-0.48329	-0.00024759	1.3322	0.00068246	0.84887	0.00043487	512.2958344968225	65.599	1.1638	65.326	64.901	66.064	-0.27282					85	31	5	0	0	0	0.06122	2	7760	7737;7760		124.59	57.648	1	3983400			62775	5065	44214	44276	67936;67937	67937					0.06566029477323809
QLIDIIHTA	9	Unmodified	_QLIDIIHTA_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2960815429688	2	512.295299	1022.57605	-0.43052	-0.00022056	1.3395	0.0006862	0.90894	0.00046564	512.2958527801237	65.301	1.1604	65.338	64.891	66.051	0.037384					73	31	3	0	0	0	0.012965	2	7659	7640;7659		172.03	47.437	1	5355400			62776	5065	44214	44276	67938;67939	67939					0.06566029477323809
QLIDIIHTA	9	Unmodified	_QLIDIIHTA_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2943115234375	2	512.295299	1022.57605	-0.28551	-0.00014626	0.26173	0.00013408	-0.023777	-1.2181E-05	512.2952841244189	65.634	0.66225	65.392	65.085	65.748	-0.24145					40	15	4	0	0	0	0.08613	1	7504	7504		115.46	10.712	1	1502400			62777	5065	44214	44276	67940	67940					0.06566029477323809
QLIDIIHTA	9	Unmodified	_QLIDIIHTA_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2951049804688	2	512.295299	1022.57605	-1.2804	-0.00065595	1.2077	0.00061871	-0.072699	-3.7243E-05	512.2957376386078	65.613	0.65929	65.4	65.094	65.753	-0.21327					43	15	4	0	0	0	0.034181	2	7506	7496;7506		138.24	50.488	1	1575800			62778	5065	44214	44276	67941;67942	67942					0.06566029477323809
QLIDIIHTA	9	Unmodified	_QLIDIIHTA_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2939453125	2	512.295299	1022.57605	-0.52224	-0.00026754	0.50102	0.00025667	-0.021219	-1.087E-05	512.295371320614	65.586	0.69911	65.335	65.027	65.726	-0.25112					45	16	4	0	0	0	0.028071	1	7482	7482		143.11	68.852	1	1488300			62779	5065	44214	44276	67943	67943					0.06566029477323809
QLIDKTTL	8	Unmodified	_QLIDKTTL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.276611328125	2	466.276575	930.538597	-0.17049	-7.9495E-05	-0.049737	-2.3191E-05	-0.22023	-0.00010269	466.2764196097301	47.818	0.81142	47.542	47.231	48.043	-0.27598					61	21	4	0	0	0	0.4075	3	4686	4673;4686;4698		96.19	16.502	1	4331300			62780	2053	44215	44277	67944;67945;67946	67945					0.07054938211717854
QLIDKTTL	8	Unmodified	_QLIDKTTL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2765808105469	2	466.276575	930.538597	-0.038389	-1.79E-05	-0.20653	-9.6302E-05	-0.24492	-0.0001142	466.2763373181569	47.626	0.85233	47.439	47.199	48.052	-0.18684					56	22	4	0	0	0	0.53523	1	4656	4656		82.305	5.5309	1	4451700			62781	2053	44215	44277	67947	67947					0.07054938211717854
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.8327026367188	2	571.832049	1141.64954	0.81239	0.00046455	-0.55615	-0.00031803	0.25624	0.00014652	571.8315654083543	74.123	0.88878	74.123	73.828	74.717	0					60	20	4	0	0	0	0.016758	3	9071	9058;9071;9085		153.04	57.221	1	4141100			62782	4363	44216	44278	67948;67949;67950	67949					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.8322143554688	2	571.832049	1141.64954	0.28317	0.00016193	-0.048188	-2.7555E-05	0.23498	0.00013437	571.8318665074931	74.387	0.84393	74.128	73.817	74.661	-0.25887					54	19	4	0	0	0	0.067814	3	9076	9065;9076;9090		122.18	28.981	1	4475700			62783	4363	44216	44278	67951;67952;67953	67952					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.8322143554688	2	571.832049	1141.64954	-1.1298	-0.00064606	1.3705	0.00078371	0.24072	0.00013765	571.8326836295383	74.132	0.8114	74.142	73.837	74.648	0.0096512					59	18	4	0	0	0	0.03201	3	9014	8988;9000;9014		139.97	32.963	1	3383700			62784	4363	44216	44278	67954;67955;67956	67956					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.8328247070312	2	571.832049	1141.64954	0.16084	9.1974E-05	0.33757	0.00019304	0.49842	0.00028501	571.8319870994002	74.342	1.3734	74.066	73.851	75.224	-0.27573					65	33	4	0	0	0	0.016584	4	8749	8740;8749;8761;8774		200.16	70.474	1	6423800			62785	4363	44216	44278	67957;67958;67959;67960	67958					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.83203125	2	571.832049	1141.64954	0.2951	0.00016875	0.35677	0.00020401	0.65187	0.00037276	571.8320383039456	74.34	0.77841	74.077	73.792	74.57	-0.26326					56	19	4	0	0	0	0.013065	4	8777	8753;8765;8777;8791		171.53	59.121	1	6245100			62786	4363	44216	44278	67961;67962;67963;67964	67963					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.8321533203125	2	571.832049	1141.64954	0.36309	0.00020763	0.5335	0.00030507	0.89659	0.0005127	571.8322566399469	74.145	1.2006	73.963	73.65	74.851	-0.18278					61	30	3	0	0	0	0.013065	4	8732	8713;8720;8732;8745		171.53	54.628	1	4749700			62787	4363	44216	44278	67965;67966;67967;67968	67967					0.08438577919810086
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.88140869140625	3	436.880156	1307.61864	0.47158	0.00020603	0.78097	0.00034119	1.2526	0.00054721	436.88100835996426	39.478	2.0767	39.478	39.112	41.189	0					187	58	6	0	0	0	0.20616	8	3385	3374;3385;3397;3409;3421;3434;3447;3461		120.31	36.659	1	60849000	+		62788	25462	44217	44279	67969;67970;67971;67972;67973;67974;67975;67976	67970					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.2616271972656	3	436.880156	1307.61864	0.47158	0.00020603	0.78097	0.00034119	1.2526	0.00054721	436.88100835996426	39.478	2.0767	39.478	39.112	41.189	0					187	58	6	0	0	0	0.03519	1	3369	3369		43.651	3.6354	1	60849000	+		62789	25462	44217	44279	67977	67977					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.8815002441406	3	436.880156	1307.61864	-0.73496	-0.00032109	2.0108	0.00087847	1.2758	0.00055738	436.8815386837457	39.492	2.5444	39.393	39.054	41.599	-0.098755					204	70	6	0	0	0	0.3202	7	3403	3358;3368;3379;3391;3403;3416;3429		106.88	42.83	1	55588000	+		62790	25462	44217	44279	67978;67979;67980;67981;67982;67983;67984	67982					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.8813781738281	3	436.880156	1307.61864	-0.4663	-0.00020372	1.7054	0.00074504	1.2391	0.00054133	436.88139760959996	39.735	2.1461	39.759	39.385	41.531	0.023727					199	60	7	0	0	0	0.03397	7	3400	3354;3364;3376;3388;3400;3413;3425		152.06	58.191	1	54853000	+		62791	25462	44217	44279	67985;67986;67987;67988;67989;67990;67991	67989					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.88153076171875	3	436.880156	1307.61864	-0.34841	-0.00015222	1.7103	0.00074719	1.3619	0.00059498	436.88185393774165	39.563	2.7011	39.398	39.044	41.745	-0.16458					214	71	6	0	0	0	0.1169	7	3394	3335;3346;3358;3370;3382;3394;3406		131.62	54.761	1	152710000	+		62792	25462	44217	44279	67992;67993;67994;67995;67996;67997;67998	67997					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.88134765625	3	436.880156	1307.61864	-0.31435	-0.00013733	2.9525	0.0012899	2.6381	0.0011526	436.8819152819592	39.747	2.8653	39.524	39.149	42.015	-0.22311					144	75	2	0	0	0	0.018089	8	3357	3349;3357;3369;3393;3405;3417;3429;3466		164.46	55.24	1	129380000	+		62793	25462	44217	44279	67999;68000;68001;68002;68003;68004;68005;68006	68000					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.8815002441406	3	436.880156	1307.61864	0.3045	0.00013303	1.0771	0.00047055	1.3816	0.00060359	436.8815728602194	39.717	3.2766	39.487	39.018	42.294	-0.23021					266	87	7	0	0	0	0.1169	8	3399	3341;3351;3363;3375;3399;3411;3449;3463		131.62	61.682	1	141410000	+		62794	25462	44217	44279	68007;68008;68009;68010;68011;68012;68013;68014	68011					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	436.880156	1307.61864	-0.73496	-0.00032109	2.0108	0.00087847	1.2758	0.00055738	436.8815386837457	39.492	2.5444	39.393	39.054	41.599	-0.098755	-0.11309	0.00040888	NaN	164.46	204	70	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55588000	+		62795	25462	44217	44279							-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	436.880156	1307.61864	-0.4663	-0.00020372	1.7054	0.00074504	1.2391	0.00054133	436.88139760959996	39.735	2.1461	39.759	39.385	41.531	0.023727	0.2522	8.6138E-06	NaN	164.46	199	60	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54853000	+		62796	25462	44217	44279							-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	436.880156	1307.61864	-0.34841	-0.00015222	1.7103	0.00074719	1.3619	0.00059498	436.88185393774165	39.563	2.7011	39.398	39.044	41.745	-0.16458	-0.10827	1.5059E-05	NaN	164.46	214	71	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152710000	+		62797	25462	44217	44279							-0.022866201851002188
QLIHYREISK	10	Unmodified	_QLIHYREISK_					0	0	0			REV__ENSG00000104643|ENST00000221086|MTMR9	REV__ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.26422119140625	3	429.5787	1285.71427	0.29817	0.00012809	-1.2327	-0.00052954	-0.93453	-0.00040145	429.5781140368843	41.694	0.50641	41.571	41.346	41.853	-0.12299					27	13	3	0	0	0	0.03519	1	3714	3714		27.644	7.6134	1	160080	+		62798	21454	44218	44280	68015	68015					0.08284152725786953
QLIIHMLKTE	10	Oxidation (M)	_QLIIHM(Oxidation (M))LKTE_		QLIIHM(1)LKTE		QLIIHM(72)LKTE	0	0	1		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.5679626464844	3	414.568924	1240.68494	-0.56329	-0.00023352	-1.1184	-0.00046363	-1.6816	-0.00069716	414.5684151320132	29.065	1.4471	28.892	28.086	29.533	-0.17258					100	33	5	0	0	0	0.64214	1	1728	1728		72.243	22.707	1	2056300			62799	8702	44219	44281	68016	68016		365			0.07422872385313894
QLIIHMLKTE	10	Oxidation (M)	_QLIIHM(Oxidation (M))LKTE_		QLIIHM(1)LKTE		QLIIHM(49)LKTE	0	0	1		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.567626953125	3	414.568924	1240.68494	-0.15477	-6.4165E-05	-1.7893	-0.00074179	-1.9441	-0.00080595	414.56817148353326	28.918	1.8284	28.768	27.964	29.792	-0.14952					111	43	4	0	0	0	0.98044	1	1698	1698		48.602	11.093	1	2272900			62800	8702	44219	44281	68017	68017		365			0.07422872385313894
QLIKAFLRKT	10	Unmodified	_QLIKAFLRKT_					0	0	0		ENST00000577157.1_1_16:25139850-25170109:+|nuORF;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1	ENST00000577157.1_1_16:25139850-25170109:+|nuORF	ENST00000577157.1_1_16:25139850-25170109:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5867614746094	3	406.595802	1216.76558	-0.17032	-6.925E-05	4.1265	0.0016778	3.9562	0.0016086	406.5975281077449	25.437	0.25584	25.211	24.975	25.231	-0.22683					10	5	3	0	0	0	0.03519	1	1188	1188		31.634	0	1	281470			62801	10436	44220	44282	68018	68018					0.16586521490489758
QLIKPRVT	8	Unmodified	_QLIKPRVT_					0	0	0		ENSG00000184185|ENST00000583088|KCNJ12;ENSG00000260458|ENST00000567955|KCNJ18	ENSG00000184185|ENST00000583088|KCNJ12	ENSG00000184185|ENST00000583088|KCNJ12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2637023925781	2	477.808377	953.6022	-0.24947	-0.0001192	-0.23299	-0.00011132	-0.48246	-0.00023052	477.80810899051204	39.003	0.90421	38.904	38.437	39.341	-0.098751					53	24	3	0	0	0	0.027866	1	3261	3261		37.159	25.648	1	788110			62802	9312	44221	44283	68019	68019					0.12354343439471904
QLIKWGLI	8	Unmodified	_QLIKWGLI_					0	0	0			REV__ENST00000316024.9_2_17:7590934-7591339:+|nuORF	REV__ENST00000316024.9_2_17:7590934-7591339:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2919616699219	2	485.807845	969.601138	0.8308	0.00040361	1.9618	0.00095306	2.7926	0.0013567	485.80896524732316	59.337	0.73496	59.337	59.145	59.88	0					25	19	2	0	0	0	0.027866	1	6826	6826		25.45	0	1	381010	+		62803	30274	44222	44284	68020	68020					0.11512129070570154
QLILIFYD	8	Unmodified	_QLILIFYD_					0	0	0			REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.2611694335938	2	512.789318	1023.56408	0.14985	7.6839E-05	-1.7846	-0.00091514	-1.6348	-0.0008383	513.2896781028626	82.795	0.56355	82.614	82.244	82.807	-0.18079					19	12	2	0	0	0	0.027866	1	10007	10007		12.959	0	1	72575	+		62804	26289	44223	44285	68021	68021					0.053244127341372405
QLILSVVAEI	10	Unmodified	_QLILSVVAEI_					0	0	0		ENST00000504176.6_1_4:113353459-113353528:+|nuORF	ENST00000504176.6_1_4:113353459-113353528:+|nuORF	ENST00000504176.6_1_4:113353459-113353528:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8336791992188	2	542.834257	1083.65396	-0.17419	-9.4554E-05	0.64545	0.00035037	0.47127	0.00025582	542.8344325071647	71.085	1.0155	70.813	70.614	71.63	-0.27185					55	23	4	0	0	0	0.57594	1	8301	8301		79.713	2.395	1	2744900			62805	15708	44224	44286	68022	68022					0.11548042342701592
QLINPPSSF	9	Unmodified	_QLINPPSSF_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2801818847656	2	501.766374	1001.5182	-0.31099	-0.00015605	-3.5679	-0.0017902	-3.8789	-0.0019463	501.7645065165807	34.426	0.61736	34.426	34.168	34.785	0					23	15	2	0	0	0	0.024457	1	2606	2606		29.15	16.943	1	704510	+		62806	36963	44225	44287	68023	68023					0.01749767551905279
QLINQKFF	8	Unmodified	_QLINQKFF_					0	0	0			REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	REV__nc|ENSG00000137494|Q8N9B4|ANKRD42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.28759765625	2	519.292559	1036.57057	-1.1731	-0.00060917	-2.921	-0.0015169	-4.0941	-0.002126	519.2908381591442	36.352	0.58909	36.352	36.096	36.685	0					25	16	2	0	0	0	0.027866	1	2847	2847		19.36	1.0356	1	1769400	+		62807	23761	44226	44288	68024	68024					0.053743506855198575
QLINYFSFSYW	11	Unmodified	_QLINYFSFSYW_					0	0	0		ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2587890625	3	489.902961	1466.68705	0.058093	2.846E-05	1.9806	0.00097028	2.0386	0.00099874	489.90380042126077	69.583	0.56602	69.583	69.308	69.874	0					35	13	5	0	0	0	0.024865	1	8420	8420		12.433	2.3289	1	225860			62808	2464	44227	44289	68025	68025					-0.027623756052435056
QLIPAVPGI	9	Unmodified	_QLIPAVPGI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.2825927734375	2	454.284203	906.553853	-0.16643	-7.5605E-05	0.44646	0.00020282	0.28003	0.00012721	454.2843135424934	83.907	1.3987	83.907	83.477	84.876	0					66	32	4	0	0	0	0.64155	1	10509	10509		50.025	5.9077	1	1112500			62809	1009	44228	44290	68026	68026					0.0968384979955772
QLIPAVPGI	9	Unmodified	_QLIPAVPGI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.2839050292969	2	454.284203	906.553853	-0.71205	-0.00032347	0.96954	0.00044044	0.25748	0.00011697	454.2845376717809	83.965	1.2304	83.891	83.485	84.715	-0.074249					66	28	4	0	0	0	0.36105	1	10467	10467		68.485	10.673	1	1264000			62810	1009	44228	44290	68027	68027					0.0968384979955772
QLIPAVPGI	9	Unmodified	_QLIPAVPGI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.2828369140625	2	454.284203	906.553853	-0.4676	-0.00021242	0.98831	0.00044898	0.52072	0.00023655	454.28447969843864	83.848	1.0288	83.874	83.469	84.498	0.02655					74	23	5	0	0	0	0.26797	1	10408	10408		79.939	19.645	1	1182200			62811	1009	44228	44290	68028	68028					0.0968384979955772
QLIPAVPGI	9	Unmodified	_QLIPAVPGI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	454.284203	906.553853	0.7916	0.00035961	0.016281	7.3964E-06	0.80788	0.00036701	454.2841204257449	83.892	0.63605	83.68	83.393	84.029	-0.21159	-0.13673	-0.00051123	NaN	79.939	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95509			62812	1009	44228	44290							0.0968384979955772
QLIPAVPGI	9	Unmodified	_QLIPAVPGI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	454.284203	906.553853	0.5712	0.00025949	-0.024362	-1.1067E-05	0.54684	0.00024842	454.28418547111505	83.921	0.60178	83.752	83.451	84.052	-0.16915	-0.064893	-0.00054816	NaN	79.939	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92750			62813	1009	44228	44290							0.0968384979955772
QLIPAVPGI	9	Unmodified	_QLIPAVPGI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;ENST00000526870.1_3_11:47861380-47861614:-|nuORF	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	454.284203	906.553853	0.35292	0.00016033	0.29482	0.00013393	0.64775	0.00029426	454.28423154214244	83.935	0.60403	83.797	83.547	84.151	-0.13789	-0.020135	-0.00025816	NaN	79.939	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92041			62814	1009	44228	44290							0.0968384979955772
QLIPFIDAV	9	Unmodified	_QLIPFIDAV_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2953186035156	2	508.294768	1014.57498	-0.55202	-0.00028059	0.79555	0.00040437	0.24353	0.00012379	508.295156863036	59.729	0.97321	59.815	59.351	60.325	0.085682					60	25	3	0	0	0	0.35646	1	6762	6762		68.787	2.3575	1	3458900			62815	10229	44229	44291	68029	68029					0.06827815108408686
QLIQAVAK	8	Unmodified	_QLIQAVAK_					0	0	0		ENST00000490962.1_1_3:72926935-72927124:-|nuORF	ENST00000490962.1_1_3:72926935-72927124:-|nuORF	ENST00000490962.1_1_3:72926935-72927124:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7560729980469	2	435.774003	869.533452	0.43445	0.00018932	-1.587	-0.00069159	-1.1526	-0.00050227	435.77359604320725	63.269	0.5755	63.269	63.126	63.701	0					18	15	2	0	0	0	0.027866	1	7457	7457		23.042	0	1	135280			62816	15446	44230	44292	68030	68030					0.09346679139753178
QLITFNLIQ	9	Unmodified	_QLITFNLIQ_					0	0	0			REV__nc|ENSG00000054793|O75110-2|ATP9A	REV__nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3201293945312	2	545.318774	1088.623	-0.61932	-0.00033772	0.28519	0.00015552	-0.33413	-0.00018221	545.3188158971607	72.649	0.8815	72.649	72.373	73.254	0					47	21	3	0	0	0	0.32811	1	8848	8848		71.877	0	1	1633500	+		62817	20193	44231	44293	68031	68031					0.08222889028479585
QLITPLVSL	9	Unmodified	_QLITPLVSL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;ENST00000503696.1_1_4:39874587-39874749:-|nuORF	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.3112487792969	2	492.310418	982.606283	0.031124	1.5323E-05	-0.25805	-0.00012704	-0.22692	-0.00011172	492.310175041045	62.02	0.78777	61.763	61.464	62.251	-0.25725					55	19	5	0	0	0	0.26966	2	6942	6942;6954		79.713	7.8351	1	8243000			62818	3893	44232	44294	68032;68033	68032					0.11428388142508084
QLITTGAPLN	10	Unmodified	_QLITTGAPLN_					0	0	0			REV__nc|ENSG00000150275|Q96QU1|PCDH15	REV__nc|ENSG00000150275|Q96QU1|PCDH15	MSMS	OPSCC_40_ClassI_Rep-1	4	514.2933349609375	2	514.292756	1026.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.821	1	66.573	66.073	67.073	-0.24839								0	0	0	0.77833	1	7675	7675		5.9211	0.36328	1		+		62819	36778	44233	44295	68034	68034					0.058737256147196604
QLIVDKKLV	9	Unmodified	_QLIVDKKLV_					0	0	0			REV__nc|ENSG00000027075|P24723-2|PRKCH	REV__nc|ENSG00000027075|P24723-2|PRKCH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.344482421875	2	528.344792	1054.67503	0.59735	0.00031561	-1.2292	-0.00064943	-0.63183	-0.00033382	528.3441043702363	54.141	1.4248	54.239	53.907	55.332	0.098015					108	40	5	0	0	0	0.15388	1	5824	5824		98.582	5.4388	1	9860600	+		62820	20029	44234	44296	68035	68035					0.14988052442208755
QLIVGHEF	8	Unmodified	_QLIVGHEF_					0	0	0			REV__ENST00000457861.1_1_7:935511-935808:+|nuORF	REV__ENST00000457861.1_1_7:935511-935808:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7771301269531	2	471.75581	941.497067	-0.45781	-0.00021598	-4.3685	-0.0020609	-4.8264	-0.0022769	471.75364817406444	28.603	0.75771	28.603	28.274	29.032	0					30	17	2	0	0	0	0.027866	1	1741	1741		8.2313	0	1	942650	+		62821	32812	44235	44297	68036	68036					0.023978022430469537
QLKAEKAR	8	Unmodified	_QLKAEKAR_					0	0	0		nc|ENSG00000148572|Q96F24-2|NRBF2;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2;ENST00000432731.2_1_1:111390701-111391313:-|nuORF	nc|ENSG00000148572|Q96F24-2|NRBF2	nc|ENSG00000148572|Q96F24-2|NRBF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.28814697265625	2	472.287808	942.561064	0.20114	9.4994E-05	-0.67758	-0.00032001	-0.47644	-0.00022502	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	1.043	1	12003	12003		30.504	0	1	52660000			62822	6040	44236	44298	68037	68037					0.08748582399982752
QLKARFLP	8	Unmodified	_QLKARFLP_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2139892578125	2	486.803094	971.591636	0.34431	0.00016761	-2.1976	-0.0010698	-1.8533	-0.00090219	486.80181498642287	97.778	0.50703	97.776	97.59	98.097	-0.0020752					13	11	2	0	0	0	0.027866	1	12385	12385		12.959	0	1	34364			62823	1039;15601	44237	44299	68038	68038					0.10470360785029698
QLKAWAQPA	9	Unmodified	_QLKAWAQPA_					0	0	0			REV__ENSG00000198894|ENST00000361786|CIPC	REV__ENSG00000198894|ENST00000361786|CIPC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3316345214844	2	506.782359	1011.55016	-0.029759	-1.5081E-05	-1.4566	-0.00073818	-1.4864	-0.00075327	506.78041150171964	41.233	0.80732	41.256	40.899	41.706	0.023006					28	22	2	0	0	0	0.024381	1	3698	3698		45.952	3.0877	1	202840	+		62824	28511	44238	44300	68039	68039					0.04485180025687896
QLKDALILL	9	Unmodified	_QLKDALILL_					0	0	0			REV__ENSG00000213420|ENST00000292377|GPC2	REV__ENSG00000213420|ENST00000292377|GPC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8182373046875	2	513.831517	1025.64848	0.67197	0.00034528	2.4607	0.0012644	3.1327	0.0016097	513.833261986422	72.592	0.28561	72.311	72.139	72.425	-0.28124					9	6	2	0	0	0	0.023061	1	8815	8815		79.713	0	1	214510	+		62825	28739	44239	44301	68040	68040					0.13668363550914364
QLKDRLFFFFL	11	Unmodified	_QLKDRLFFFFL_					0	0	0			REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.25408935546875	3	491.946612	1472.81801	-0.98295	-0.00048356	-1.4626	-0.00071954	-2.4456	-0.0012031	491.9451866012796	39.86	0.6279	39.748	39.467	40.095	-0.11223					26	16	3	0	0	0	0.024821	1	3476	3476		9.6461	0.84683	1	135040	+		62826	29564	44240	44302	68041	68041					0.10051059833449472
QLKEIEIRLRR	11	Unmodified	_QLKEIEIRLRR_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.3026123046875	3	485.30357	1452.88888	-0.14311	-6.9453E-05	-1.8921	-0.00091826	-2.0353	-0.00098772	485.3026494534992	17.645	1.6869	17.438	17.166	18.853	-0.20669					80	33	4	0	0	0	1.096	1	202	202		12.433	0	1	381270	+		62827	21178	44241	44303	68042	68042					0.18055152870942948
QLKEQKKL	8	Unmodified	_QLKEQKKL_					0	0	0		nc|ENSG00000163380|Q0VAK6-2|LMOD3;ENSG00000163380|ENST00000420581|LMOD3	nc|ENSG00000163380|Q0VAK6-2|LMOD3	nc|ENSG00000163380|Q0VAK6-2|LMOD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8183288574219	2	507.818941	1013.62333	0.44443	0.00022569	-0.41733	-0.00021193	0.027095	1.3759E-05	507.81855980929726	19.137	0.74387	18.933	18.708	19.452	-0.20343					26	14	3	0	0	0	0.64735	2	378	378;391		71.877	0	1	272390			62828	7068	44242	44304	68043;68044	68043					0.1170630874833023
QLKETEQNY	9	Unmodified	_QLKETEQNY_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.781982421875	2	576.78021	1151.54587	-0.24821	-0.00014316	3.8051	0.0021947	3.5569	0.0020516	576.7822400949027	65.926	1.9371	65.684	64.6	66.538	-0.24145					163	49	4	0	0	0	0.75397	1	7514	7514		42.396	3.1433	1	1844500			62829	4266	44243	44305	68045	68045					-0.023843739785206708
QLKFLIASL	9	Unmodified	_QLKFLIASL_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.79638671875	2	516.826235	1031.63792	0.034165	1.7657E-05	0.047696	2.4651E-05	0.081861	4.2308E-05	516.8262399468335	58.072	0.84081	58.072	57.946	58.787	0					33	22	2	0	0	0	0.024427	1	6592	6592		42.396	15.703	1	185870	+		62830	36714	44244	44306	68046	68046					0.12336380896454102
QLKFTAKQ	8	Unmodified	_QLKFTAKQ_					0	0	0		ENSG00000131165|ENST00000397901|CHMP1A;ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENSG00000131165|ENST00000397901|CHMP1A	ENSG00000131165|ENST00000397901|CHMP1A	MSMS	OPSCC_40_ClassI_Rep-3	6	482.2862243652344	2	482.284734	962.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.9	1	16.646	16.146	17.146	-0.25378								0	0	0	0.68521	1	94	94		42.396	1.8235	1				62831	4502	44245	44307	68047	68047					0.07214064168454115
QLKGHQKT	8	Unmodified	_QLKGHQKT_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.29595947265625	2	470.272158	938.529764	2.947	0.0013859	-2.8732	-0.0013512	0.073806	3.4709E-05	470.27071548946543	18.358	0.48871	18.358	18.186	18.674	0					13	9	2	0	0	0	0.027866	1	317	317		21.96	0	1	71612			62832	10599	44246	44308	68048	68048					0.05804009365908769
QLKHFYELF	9	Unmodified	_QLKHFYELF_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	408.88519287109375	3	408.885241	1223.63389	1.5858	0.00064839	-1.9433	-0.0007946	-0.35757	-0.0001462	408.8844199780732	23.248	0.77106	23.057	22.758	23.529	-0.19117					43	17	3	0	0	0	0.89441	1	883	883		32.812	2.2436	1	1226800	+		62833	24979	44247	44309	68049	68049					0.03102291402751689
QLKKELSVALI	11	Unmodified	_QLKKELSVALI_					0	0	0			REV__ENSG00000135914|ENST00000258400|HTR2B	REV__ENSG00000135914|ENST00000258400|HTR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.392578125	2	621.395013	1240.77547	-1.458	-0.00090597	-2.1618	-0.0013434	-3.6198	-0.0022493	621.3934809680574	104.25	0.27953	104.12	104.02	104.3	-0.12927					17	10	2	0	0	0	1.0521	1	12978	12978		24.519	0	1	95721	+		62834	23595	44248	44310	68050	68050					0.1647166470522734
QLKKKLSE	8	Unmodified	_QLKKKLSE_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-11|MYZAP;REV__nc|ENSG00000263155|P0CAP1-10|MYZAP	REV__nc|ENSG00000263155|P0CAP1-10|MYZAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.3053283691406	2	487.305667	972.596781	0.97482	0.00047503	-1.261	-0.00061449	-0.28618	-0.00013946	487.30494734274015	19.775	0.68029	19.575	19.355	20.035	-0.2001					28	13	4	0	0	0	0.68535	1	453	453		68.485	0	1	646380	+		62835	37189;29128	44249	44311	68051	68051					0.10938619856983678
QLKKLEAE	8	Unmodified	_QLKKLEAE_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43;REV__ENSG00000131018|ENST00000367255|SYNE1;REV__nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7311096191406	2	479.782025	957.549496	0.1472	7.0624E-05	-0.62639	-0.00030053	-0.47919	-0.00022991	479.78154725810356	32.021	0.24011	32.021	31.869	32.109	0					7	5	2	0	0	0	0.027866	1	2178	2178		45.952	0	1	75484	+		62836	23178;28343;25959	44250	44312	68052	68052					0.0690234058599799
QLKKTKTK	8	Unmodified	_QLKKTKTK_					0	0	0		ENST00000448942.5_1_6:138178656-138178794:-|nuORF	ENST00000448942.5_1_6:138178656-138178794:-|nuORF	ENST00000448942.5_1_6:138178656-138178794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79266357421875	2	487.821484	973.628415	-0.85329	-0.00041625	0.017975	8.7685E-06	-0.83532	-0.00040749	487.82362182227405	36.023	0.20686	36.061	35.892	36.098	0.038044					8	5	2	0	0	0	0.027866	1	2758	2758		37.159	0	1	84031			62837	14491	44251	44313	68053	68053					0.14054612610937056
QLKNVIRYN	9	Unmodified	_QLKNVIRYN_					0	0	0		nc|ENSG00000010671|Q06187-2|BTK;ENSG00000010671|ENST00000308731|BTK	nc|ENSG00000010671|Q06187-2|BTK	nc|ENSG00000010671|Q06187-2|BTK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	573.3601684570312	2	574.332747	1146.65094	-0.33623	-0.00019311	1.6354	0.00093926	1.2992	0.00074615	574.333799882284	52.783	0.4943	52.875	52.445	52.939	0.091938					19	12	3	0	0	0	0.024381	1	5539	5539		29.15	0	1	182690			62838	880	44252	44314	68054	68054					0.0834821200855913
QLKQKVMTH	9	Unmodified	_QLKQKVMTH_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.815673828125	2	556.815876	1111.6172	-0.043989	-2.4494E-05	-0.0072823	-4.0549E-06	-0.051272	-2.8549E-05	556.8156537626336	20.438	0.78211	20.27	20.002	20.784	-0.16774					38	15	4	0	0	0	0.03849	1	546	546		134.81	17.907	1	332790			62839	8132	44253	44315	68055	68055					0.06585467245145082
QLKQKVMTH	9	Unmodified	_QLKQKVMTH_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.8161010742188	2	556.815876	1111.6172	0.78118	0.00043497	-0.91663	-0.0005104	-0.13545	-7.5421E-05	556.8151563342885	20.507	0.7886	20.311	20.04	20.828	-0.19577					37	15	4	0	0	0	0.15366	2	546	546;558		98.629	32.25	1	315140			62840	8132	44253	44315	68056;68057	68056					0.06585467245145082
QLKQKVMTH	9	Unmodified	_QLKQKVMTH_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.815673828125	2	556.815876	1111.6172	-0.42652	-0.00023749	0.27312	0.00015208	-0.1534	-8.5418E-05	556.8157952248523	20.567	0.79381	20.344	20.117	20.911	-0.22344					28	15	3	0	0	0	0.23085	1	539	539		84.916	23.944	1	274450			62841	8132	44253	44315	68058	68058					0.06585467245145082
QLKQQIQSI	9	Unmodified	_QLKQQIQSI_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3187255859375	2	543.319306	1084.62406	0.1951	0.000106	-0.91399	-0.00049659	-0.71889	-0.00039059	543.3187980096594	58.982	0.7278	58.982	58.606	59.333	0					64	19	4	0	0	0	0.12602	2	6716	6694;6716		104.75	0.68976	1	10842000			62842	2140	44254	44316	68059;68060	68060					0.08513103397376653
QLKQQIQSI	9	Unmodified	_QLKQQIQSI_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3196411132812	2	543.319306	1084.62406	1.156	0.00062806	-1.6846	-0.00091529	-0.52866	-0.00028723	543.3183534306464	59.18	0.6469	58.993	58.684	59.331	-0.18705					57	17	4	0	0	0	0.12602	2	6703	6703;6713		104.75	18.885	1	10479000			62843	2140	44254	44316	68061;68062	68061					0.08513103397376653
QLKQQIQSI	9	Unmodified	_QLKQQIQSI_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3192749023438	2	543.319306	1084.62406	-0.31182	-0.00016942	-0.29034	-0.00015775	-0.60216	-0.00032716	543.319121283943	58.816	0.68447	58.902	58.593	59.277	0.085682					69	18	5	0	0	0	0.082191	2	6594	6594;6604		116.9	0	1	9624500			62844	2140	44254	44316	68063;68064	68063					0.08513103397376653
QLKQQQQQNQ	10	Unmodified	_QLKQQQQQNQ_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.8902587890625	3	424.221464	1269.64256	-0.77974	-0.00033078	-1.1044	-0.00046853	-1.8842	-0.00079931	424.2219209450975	20.103	0.14826	20.103	19.979	20.127	0					4	2	2	0	0	0	0.03519	1	491	491		21.686	6.3526	1	5467.8	+		62845	26290	44255	44317	68065	68065					0.018526133012755963
QLKQRNTL	8	Unmodified	_QLKQRNTL_					0	0	0		nc|ENSG00000007312|P40259-2|CD79B;ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B	nc|ENSG00000007312|P40259-2|CD79B	nc|ENSG00000007312|P40259-2|CD79B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.79840087890625	2	500.79854	999.582528	-1.2297	-0.00061585	-1.2517	-0.00062687	-2.4815	-0.0012427	500.7989152049129	93.322	2.1494	93.183	92.829	94.979	-0.13995					102	49	4	0	0	0	1.043	1	11492	11492		30.504	0	1	1721300			62846	815	44256	44318	68066	68066					0.08271967428709104
QLKQWRGE	8	Unmodified	_QLKQWRGE_					0	0	0		nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1;ENST00000496016.1_1_22:24483558-24487884:+|nuORF	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7843017578125	2	522.78289	1043.55123	0.46086	0.00024093	3.0182	0.0015779	3.479	0.0018188	522.7843843276393	18.626	0.74176	18.47	18.197	18.939	-0.15637					27	14	2	0	0	0	1.0198	1	331	331		34.173	0.65696	1	142120			62847	2109	44257	44319	68067	68067					0.031193943946163927
QLKRGKPA	8	Unmodified	_QLKRGKPA_					0	0	0			REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF	REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.28497314453125	2	449.285069	896.555585	0.16637	7.4748E-05	-0.0054328	-2.4409E-06	0.16094	7.2307E-05	449.2849261914421	34.814	0.94889	34.599	34.227	35.176	-0.21556					59	23	4	0	0	0	0.95417	1	2597	2597		44.531	2.0566	1	2518100	+		62848	32286	44258	44320	68068	68068					0.10316903608179473
QLKRSIRTL	9	Unmodified	_QLKRSIRTL_					0	0	0			REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8324584960938	2	557.85639	1113.69823	-0.59949	-0.00033443	-1.7365	-0.00096872	-2.336	-0.0013031	557.8555666160136	22.532	0.1338	22.346	22.281	22.415	-0.18539					4	2	2	0	0	0	0.022832	1	801	801		82.241	10.363	1	11121	+		62849	36912	44259	44321	68069	68069					0.14592491279563546
QLKSGITL	8	Unmodified	_QLKSGITL_					0	0	0			REV__ENSG00000197956|ENST00000368719|S100A6	REV__ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.26611328125	2	430.26601	858.517468	0.13821	5.9466E-05	0.055752	2.3988E-05	0.19396	8.3454E-05	430.2659190136787	24.083	0.94178	23.904	23.652	24.594	-0.17847					37	21	2	0	0	0	0.50239	1	1014	1014		85.359	0	1	843750	+		62850	28367	44260	44322	68070	68070					0.08254972902852842
QLKSGITL	8	Unmodified	_QLKSGITL_					0	0	0			REV__ENSG00000197956|ENST00000368719|S100A6	REV__ENSG00000197956|ENST00000368719|S100A6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	430.26601	858.517468	0.29739	0.00012796	-0.15777	-6.7885E-05	0.13962	6.0072E-05	430.2658110079282	24.281	0.89754	24.066	23.822	24.72	-0.2151	0.089188	0.00063361	NaN	85.359	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	960640	+		62851	28367	44260	44322							0.08254972902852842
QLKSGITL	8	Unmodified	_QLKSGITL_					0	0	0			REV__ENSG00000197956|ENST00000368719|S100A6	REV__ENSG00000197956|ENST00000368719|S100A6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	430.26601	858.517468	0.13821	5.9466E-05	0.055752	2.3988E-05	0.19396	8.3454E-05	430.2659190136787	24.083	0.94178	23.904	23.652	24.594	-0.17847	-0.072968	0.00081736	NaN	85.359	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843750	+		62852	28367	44260	44322							0.08254972902852842
QLKSRNPG	8	Unmodified	_QLKSRNPG_					0	0	0			REV__nc|ENSG00000115808|O43815-2|STRN	REV__nc|ENSG00000115808|O43815-2|STRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7902526855469	2	450.256508	898.498464	0.10171	4.5797E-05	0.87719	0.00039496	0.9789	0.00044076	450.25667770252244	20.394	0.73461	20.171	19.779	20.514	-0.22344					23	14	3	0	0	0	0.027866	1	490	490		68.787	13.283	1	50507	+		62853	36586	44261	44323	68071	68071					0.045154363318033575
QLKSSQAKW	9	Unmodified	_QLKSSQAKW_					0	0	0		ENST00000590100.5_1_17:43345421-43345667:+|nuORF	ENST00000590100.5_1_17:43345421-43345667:+|nuORF	ENST00000590100.5_1_17:43345421-43345667:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7821655273438	2	538.298373	1074.58219	-0.61713	-0.0003322	-0.30384	-0.00016356	-0.92097	-0.00049576	538.7989055881884	32.589	0.30491	32.652	32.54	32.845	0.062885					9	7	2	0	0	0	0.024397	1	2224	2224		39.253	8.7492	1	69139			62854	17320	44262	44324	68072	68072					0.04788547708835722
QLKSSQAKW	9	Unmodified	_QLKSSQAKW_					0	0	0		ENST00000590100.5_1_17:43345421-43345667:+|nuORF	ENST00000590100.5_1_17:43345421-43345667:+|nuORF	ENST00000590100.5_1_17:43345421-43345667:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.298373	1074.58219	-1.1527	-0.00062047	3.5	0.001884	2.3473	0.0012636	538.2993057766387	32.836	0.52316	32.67	32.395	32.918	-0.16565	0.0090312	0.0018588	NaN	56.721	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89351			62855	17320	44262	44324							0.04788547708835722
QLKTRIVL	8	Unmodified	_QLKTRIVL_					0	0	0		nc|ENSG00000008277|Q9P0K1-4|ADAM22;nc|ENSG00000008277|Q9P0K1-3|ADAM22;nc|ENSG00000008277|Q9P0K1-5|ADAM22;nc|ENSG00000008277|Q9P0K1-2|ADAM22;nc|ENSG00000008277|Q9P0K1|ADAM22;ENSG00000008277|ENST00000413139|ADAM22	nc|ENSG00000008277|Q9P0K1-4|ADAM22	nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.9275817871094	2	485.824027	969.633501	-0.11399	-5.5378E-05	-0.16687	-8.1071E-05	-0.28086	-0.00013645	485.8239636851344	45.243	0.3142	45.032	44.871	45.185	-0.21109					11	8	2	0	0	0	0.027866	1	4258	4258		19.36	0	1	144100			62856	840	44263	44325	68073	68073					0.14746916473552574
QLKVKDLVLSV	11	Unmodified	_QLKVKDLVLSV_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.3936157226562	2	621.395013	1240.77547	0.18936	0.00011767	-3.3621	-0.0020892	-3.1728	-0.0019715	621.3928046236636	103.28	0.6273	103.29	103.01	103.64	0.0054245					38	14	3	0	0	0	1.0748	1	13224	13224		18.262	0.89712	1	753360			62857	1572	44264	44326	68074	68074					0.16471664705204603
QLKWWRWFQKR	11	Unmodified	_QLKWWRWFQKR_					0	0	0			REV__chr12:54282932-54283812|522|110.57|0.0|23.4|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54282932-54283812|522|110.57|0.0|23.4|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.8913269042969	4	416.234848	1660.91028	-0.26784	-0.00011149	1.8733	0.00077975	1.6055	0.00066826	416.4869434185525	33.736	0.36065	33.507	33.234	33.594	-0.22952					13	8	2	0	0	0	0.024876	1	2434	2434		5.6988	4.3769	1	117670	+		62858	19360	44265	44327	68075	68075					0.10626582690315445
QLKWWRWFQKR	11	Unmodified	_QLKWWRWFQKR_					0	0	0			REV__chr12:54282932-54283812|522|110.57|0.0|23.4|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54282932-54283812|522|110.57|0.0|23.4|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.9032287597656	4	416.234848	1660.91028	-0.053559	-2.2293E-05	1.0649	0.00044327	1.0114	0.00042097	416.236485465184	32.063	0.12747	31.827	31.74	31.867	-0.23667					4	2	2	0	0	0	0.024902	1	2178	2178		0.31226	0	1	11484	+		62859	19360	44265	44327	68076	68076					0.10626582690315445
QLKWWRWLRRR	11	Unmodified	_QLKWWRWLRRR_					0	0	0			REV__chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.25592041015625	4	421.750931	1682.97462	0.20751	8.7516E-05	3.1277	0.0013191	3.3352	0.0014066	421.7522612039356	20.628	1.5499	20.461	20.147	21.697	-0.16774					82	31	4	0	0	0	0.024902	1	721	721		0.31226	0	1	973870	+		62860	19362	44266	44328	68077	68077					0.16044782567132643
QLLAILPEA	9	Unmodified	_QLLAILPEA_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2949523925781	2	484.294768	966.574983	0.9232	0.0004471	-0.98318	-0.00047615	-0.059989	-2.9052E-05	484.29428972571293	85.173	0.99649	85.173	84.792	85.789	0					66	23	4	0	0	0	0.082191	1	10667	10667		116.9	4.4927	1	1900400			62861	8131	44267	44329	68078	68078					0.09035815108416045
QLLAILPEA	9	Unmodified	_QLLAILPEA_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2944641113281	2	484.294768	966.574983	-0.49564	-0.00024004	0.5208	0.00025222	0.025164	1.2187E-05	484.29499537271585	85.139	1.1595	85.082	84.732	85.891	-0.057617					70	27	4	0	0	0	0.047345	1	10638	10638		129.68	3.8686	1	1940500			62862	8131	44267	44329	68079	68079					0.09035815108416045
QLLAKQVKA	9	Unmodified	_QLLAKQVKA_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.79559326171875	2	499.821484	997.628415	-0.49516	-0.00024749	2.0466	0.001023	1.5515	0.00077546	499.822497216427	66.986	0.24286	66.705	66.555	66.798	-0.28149					9	5	2	0	0	0	0.024541	1	7961	7961		16.473	0	1	1145800			62863	9561	44268	44330	68080	68080					0.1295061261093906
QLLALLPSL	9	Unmodified	_QLLALLPSL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.3128356933594	2	484.312961	966.611368	0.020142	9.7552E-06	-0.69318	-0.00033571	-0.67303	-0.00032596	484.31221817997033	99.631	2.0202	99.626	99.21	101.23	-0.0050888					75	50	3	0	0	0	0.033448	1	12677	12677		138.83	5.0129	1	1132000			62864	9464	44269	44331	68081	68081					0.12672692005139652
QLLALLPSL	9	Unmodified	_QLLALLPSL_					0	0	0		ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	ENSG00000185686|ENST00000405655|PRAME	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	484.312961	966.611368	0.32462	0.00015722	-0.57586	-0.0002789	-0.25124	-0.00012168	484.31246372669887	99.613	0.77578	99.613	99.135	99.91	0	0.022233	-0.00018381	NaN	138.83	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1008200			62865	9464	44269	44331							0.12672692005139652
QLLANSNYEF	10	Unmodified	_QLLANSNYEF_					0	0	0			REV__TENM1|p.G2232A|1|0.1|ENSG00000009694|chrX:124384215-124384215|C/G|missense_variant	REV__TENM1|p.G2232A|1|0.1|ENSG00000009694|chrX:124384215-124384215|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	400.196144	1197.5666	1.0508	0.00042052	0.43926	0.00017579	1.49	0.0005963	400.1960662456804	22.714	0.46429	22.525	22.236	22.7	-0.18894					23	9	4	0	0	0	0.03519	1	854	854		20.03	12.351	1	91492	+		62866	37684	44270	44332	68082	68082					-0.0242778359888689
QLLAQEHNY	9	Unmodified	_QLLAQEHNY_					0	0	0		ADAMTS18|p.V701Sfs*13|1|0.17|ENSG00000140873|chr16:77322398-77322399|-/T|frameshift_variant;nc|ENSG00000140873|Q8TE60-2|ADAMTS18;ENSG00000140873|ENST00000282849|ADAMTS18	ADAMTS18|p.V701Sfs*13|1|0.17|ENSG00000140873|chr16:77322398-77322399|-/T|frameshift_variant	ADAMTS18|p.V701Sfs*13|1|0.17|ENSG00000140873|chr16:77322398-77322399|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3104248046875	2	558.277638	1114.54072	0.10792	6.0249E-05	-0.54305	-0.00030317	-0.43513	-0.00024292	558.2770758362983	69.589	1.0345	69.338	68.824	69.858	-0.25063					39	24	2	0	0	0	0.024477	1	8095	8095		27.882	0	1	165550			62867	26	44271	44333	68083	68083					-0.01196633050494711
QLLAYLDF	8	Unmodified	_QLLAYLDF_					0	0	0		ATP8B4|p.F534Y|1|0.32|ENSG00000104043|chr15:49931160-49931160|A/T|missense_variant	ATP8B4|p.F534Y|1|0.32|ENSG00000104043|chr15:49931160-49931160|A/T|missense_variant	ATP8B4|p.F534Y|1|0.32|ENSG00000104043|chr15:49931160-49931160|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.3035583496094	2	491.765843	981.517133	-0.3139	-0.00015437	3.2472	0.0015968	2.9333	0.0014425	491.7660519790908	32.337	0.53969	32.337	32.03	32.569	0					30	13	3	0	0	0	0.027866	1	2187	2187		42.474	1.9018	1	337040			62868	161	44272	44334	68084	68084					0.025635531829948377
QLLCLNVKP	9	Unmodified	_QLLCLNVKP_					0	0	0			REV__ENSG00000138688|ENST00000679879|BLTP1	REV__ENSG00000138688|ENST00000679879|BLTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2635498046875	2	514.30207	1026.58959	-0.62587	-0.00032188	3.8453	0.0019776	3.2194	0.0016557	514.3039583290223	29.756	0.68835	29.763	29.392	30.08	0.0069504					47	16	4	0	0	0	0.024381	1	1828	1828		37.159	0	1	2047000	+		62869	23887	44273	44335	68085	68085					0.07735563984920191
QLLCMVDI	8	Unmodified	_QLLCMVDI_					0	0	0			REV__ENSG00000183230|ENST00000433211|CTNNA3	REV__ENSG00000183230|ENST00000433211|CTNNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.2554931640625	2	467.740457	933.46636	0.96953	0.00045349	2.4092	0.0011269	3.3787	0.0015804	467.74051432113407	76.293	0.34997	76.305	76.015	76.365	0.011635					10	8	2	0	0	0	0.027866	1	9290	9290		25.45	0	1	66272	+		62870	27553	44274	44336	68086	68086					-0.003034354578744569
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6;ENSG00000139318|ENST00000279488|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.8120727539062	2	567.811313	1133.60807	0.16903	9.598E-05	-0.75717	-0.00042993	-0.58813	-0.00033395	567.8107874437967	70.903	1.4641	70.903	70.44	71.904	0					69	36	3	0	0	0	0.013924	4	8558	8558;8570;8583;8597		167.23	45.053	1	10266000			62871	7208;5323	44275	44337	68087;68088;68089;68090	68087					0.04661397160475644
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6;ENSG00000139318|ENST00000279488|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.8116455078125	2	567.811313	1133.60807	0.68241	0.00038748	-1.1159	-0.00063362	-0.43348	-0.00024614	567.8105892798401	71.307	1.7867	71.018	70.268	72.054	-0.28858					89	40	3	0	0	0	0.01388	5	8582	8570;8582;8593;8607;8621		180.87	70.75	1	10658000			62872	7208;5323	44275	44337	68091;68092;68093;68094;68095	68092					0.04661397160475644
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6;ENSG00000139318|ENST00000279488|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.811279296875	2	567.811313	1133.60807	-0.73969	-0.00042	0.36333	0.0002063	-0.37636	-0.0002137	567.8115592614184	70.986	2.1058	70.997	70.345	72.451	0.010735					88	52	3	0	0	0	0.013293	5	8495	8495;8505;8516;8529;8544		176.09	50.273	1	10174000			62873	7208;5323	44275	44337	68096;68097;68098;68099;68100	68096					0.04661397160475644
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6;ENSG00000139318|ENST00000279488|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.811313	1133.60807	0.18309	0.00010396	-1.3045	-0.00074073	-1.1214	-0.00063676	567.8104757454041	71.175	0.31234	70.903	70.658	70.97	-0.27185	-0.025577	-0.00082882	NaN	176.09	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282960			62874	7208;5323	44275	44337							0.04661397160475644
QLLDFERTL	9	Unmodified	_QLLDFERTL_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6;ENSG00000139318|ENST00000279488|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7;nc|ENSG00000139318|Q16828-2|DUSP6	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	567.811313	1133.60807	0.59422	0.0003374	-1.2902	-0.00073258	-0.69596	-0.00039518	567.8106656974949	71.036	0.21817	70.822	70.651	70.869	-0.21424	-0.10634	-0.00081252	NaN	176.09	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452370			62875	7208;5323	44275	44337							0.04661397160475644
QLLDFSQKL	9	Unmodified	_QLLDFSQKL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7646484375	2	546.308406	1090.60226	-0.59604	-0.00032562	0.36756	0.0002008	-0.22848	-0.00012482	546.3084670807651	67.303	1.5451	67.303	66.672	68.217	0					39	29	2	0	0	0	0.022657	1	8060	8060		77.318	7.69	1	890070			62876	1742	44276	44338	68101	68101					0.06058298648804339
QLLDFSQKL	9	Unmodified	_QLLDFSQKL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.76513671875	2	546.308406	1090.60226	-0.61065	-0.0003336	0.77356	0.0004226	0.16291	8.9002E-05	546.3088678863131	67.556	1.7996	67.58	66.559	68.358	0.023911					36	24	2	0	0	0	0.023454	1	7995	7995		62.107	5.3864	1	1062600			62877	1742	44276	44338	68102	68102					0.06058298648804339
QLLDQGWLN	9	Unmodified	_QLLDQGWLN_					0	0	0			REV__nc|ENSG805|P63124|HERV-K104_pro	REV__nc|ENSG805|P63124|HERV-K104_pro	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.7620849609375	2	543.782556	1085.55056	-1.3767	-0.00074861	1.245	0.00067701	-0.13167	-7.1599E-05	543.7829255173945	84.415	0.75402	84.342	84.004	84.758	-0.072769					49	17	4	0	0	0	0.024261	1	10500	10500		54.776	8.8041	1	684470	+		62878	37246	44277	44339	68103	68103					0.01120554954900399
QLLDQSHL	8	Unmodified	_QLLDQSHL_					0	0	0			REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.25604248046875	2	477.256174	952.497795	0.20706	9.8819E-05	0.036975	1.7647E-05	0.24403	0.00011647	477.2560150235621	41.572	0.67491	41.436	41.099	41.774	-0.13553					49	17	4	0	0	0	0.59392	1	3674	3674		76.847	0	1	2726200	+		62879	25894	44278	44340	68104	68104					0.019645968920940504
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.2957153320312	2	543.295496	1084.57644	-0.77093	-0.00041884	-0.09775	-5.3107E-05	-0.86868	-0.00047195	543.2954476060191	72.803	0.82568	72.803	72.573	73.399	0					40	20	2	0	0	0	0.14181	2	8871	8871;8883		101.25	23.935	1	2378700			62880	6688	44279	44341	68105;68106	68105					0.03753404406529626
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.2971801757812	2	543.295496	1084.57644	-0.55131	-0.00029952	-0.37885	-0.00020583	-0.93016	-0.00050535	543.2952926792227	72.829	0.86765	72.838	72.611	73.479	0.0096512					38	21	2	0	0	0	0.18994	1	8788	8788		90.601	13.283	1	2439200			62881	6688	44279	44341	68107	68107					0.03753404406529626
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2979125976562	2	543.295496	1084.57644	-0.56082	-0.00030469	-0.83051	-0.00045121	-1.3913	-0.0007559	543.2946566009988	73.219	1.0222	72.942	72.582	73.605	-0.2769					45	24	3	0	0	0	0.020687	2	8596	8584;8596		148.99	23.173	1	789850			62882	6688	44279	44341	68108;68109	68109					0.03753404406529626
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.297607421875	2	543.295496	1084.57644	-0.53968	-0.00029321	-0.87516	-0.00047547	-1.4148	-0.00076868	543.2946628210145	73.245	1.0493	72.98	72.638	73.687	-0.26479					61	25	3	0	0	0	0.030064	2	8598	8598;8610		141.52	14.059	1	1200900			62883	6688	44279	44341	68110;68111	68110					0.03753404406529626
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2972412109375	2	543.295496	1084.57644	-1.0705	-0.00058162	-0.35823	-0.00019463	-1.4288	-0.00077624	543.2948829978706	72.993	0.88968	72.794	72.539	73.429	-0.19811					38	21	3	0	0	0	0.016542	2	8575	8562;8575		154.12	26.657	1	878650			62884	6688	44279	44341	68112;68113	68113					0.03753404406529626
QLLEAFMEPK	10	Oxidation (M)	_QLLEAFM(Oxidation (M))EPK_		QLLEAFM(1)EPK		QLLEAFM(96)EPK	0	0	1			REV__ENSG00000145390|ENST00000692078|USP53	REV__ENSG00000145390|ENST00000692078|USP53	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3103637695312	2	611.312832	1220.61111	0.17589	0.00010753	-3.741	-0.0022869	-3.5651	-0.0021794	611.3104346069422	47.368	2.2607	47.215	46.208	48.469	-0.153					132	64	4	0	0	0	0.42599	1	4721	4721		96.034	13.283	1	3817400	+		62885	24406	44280	44342	68114	68114		726			0.009629042229562401
QLLEKSTI	8	Unmodified	_QLLEKSTI_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2765808105469	2	466.276575	930.538597	-0.10707	-4.9923E-05	-0.012348	-5.7575E-06	-0.11942	-5.5681E-05	466.27641825006435	47.531	1.0314	47.434	47.046	48.077	-0.096649					60	27	3	0	0	0	0.845	1	4645	4645		55.504	0	1	4863200	+		62886	22722	44281	44343	68115	68115					0.07054938211717854
QLLEKSTI	8	Unmodified	_QLLEKSTI_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2769775390625	2	466.276575	930.538597	-0.038389	-1.79E-05	-0.20653	-9.6302E-05	-0.24492	-0.0001142	466.2763373181569	47.626	0.85233	47.439	47.199	48.052	-0.18684					56	22	4	0	0	0	0.845	1	4680	4680		55.504	0	1	4451700	+		62887	22722	44281	44343	68116	68116					0.07054938211717854
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8333740234375	2	542.834257	1083.65396	0.25399	0.00013787	-0.34739	-0.00018858	-0.093404	-5.0703E-05	542.8338760310902	70.804	1.023	70.804	70.316	71.339	0					58	24	4	0	0	0	0.013065	1	8567	8567		171.53	32.706	1	4230800			62888	2005	44282	44344	68117	68117					0.11548042342701592
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8341064453125	2	542.834257	1083.65396	0.30871	0.00016758	-0.59211	-0.00032142	-0.2834	-0.00015384	542.8337345092123	71.19	0.91837	70.901	70.546	71.464	-0.28858					61	22	4	0	0	0	0.027092	2	8590	8577;8590		143.89	20.114	1	4694400			62889	2005	44282	44344	68118;68119	68119					0.11548042342701592
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.8330078125	2	542.834257	1083.65396	-0.7152	-0.00038824	0.49595	0.00026922	-0.21925	-0.00011902	542.8343444405049	70.932	1.1617	70.943	70.68	71.842	0.010735					62	29	4	0	0	0	0.027092	2	8499	8499;8514		143.89	29.585	1	4213600			62890	2005	44282	44344	68120;68121	68120					0.11548042342701592
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8334350585938	2	542.834257	1083.65396	-0.17419	-9.4554E-05	0.64545	0.00035037	0.47127	0.00025582	542.8344325071647	71.085	1.0155	70.813	70.614	71.63	-0.27185					55	23	4	0	0	0	0.32811	1	8296	8296		71.877	7.6702	1	2744900			62891	2005	44282	44344	68122	68122					0.11548042342701592
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.8333129882812	2	542.834257	1083.65396	-0.2526	-0.00013712	0.91084	0.00049444	0.65825	0.00035732	542.8345807951765	71.116	1.0001	70.859	70.564	71.564	-0.25712					55	23	4	0	0	0	0.6238	1	8298	8298		51.193	13.381	1	1987100			62892	2005	44282	44344	68123	68123					0.11548042342701592
QLLEKVIEL	9	Unmodified	_QLLEKVIEL_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.833740234375	2	542.834257	1083.65396	-0.11232	-6.0973E-05	0.74429	0.00040403	0.63197	0.00034306	542.834489656186	70.935	1.0846	70.721	70.484	71.568	-0.21425					60	25	4	0	0	0	0.37611	1	8280	8280		67.494	0	1	2964900			62893	2005	44282	44344	68124	68124					0.11548042342701592
QLLELPLNL	9	Unmodified	_QLLELPLNL_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.821044921875	2	526.82115	1051.62775	-0.53959	-0.00028427	0.32782	0.0001727	-0.21177	-0.00011156	526.8212163315103	98.676	1.134	98.676	98.358	99.492	0					57	25	3	0	0	0	0.053401	5	12609	12599;12609;12621;12633;12647		127.46	27.495	1	830150			62894	9236	44283	44345	68125;68126;68127;68128;68129	68126					0.10399773171229754
QLLELPLNL	9	Unmodified	_QLLELPLNL_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.8209838867188	2	526.82115	1051.62775	-0.025653	-1.3515E-05	-0.21164	-0.0001115	-0.2373	-0.00012501	526.8209531416971	98.642	0.99141	98.652	98.232	99.223	0.010231					58	22	4	0	0	0	0.071379	4	12570	12558;12570;12581;12592		120.87	20.772	1	728070			62895	9236	44283	44345	68130;68131;68132;68133	68131					0.10399773171229754
QLLELPLNL	9	Unmodified	_QLLELPLNL_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8206176757812	2	526.82115	1051.62775	0.70528	0.00037156	-0.92723	-0.00048849	-0.22195	-0.00011693	526.8205285973048	98.783	0.99928	98.779	98.39	99.389	-0.0038834					55	22	3	0	0	0	0.016542	3	12535	12535;12545;12555		154.12	33.497	1	770700			62896	9236	44283	44345	68134;68135;68136	68134					0.10399773171229754
QLLEMQTKF	9	Unmodified	_QLLEMQTKF_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.7778930664062	2	569.302267	1136.58998	-0.22988	-0.00013087	3.4485	0.0019632	3.2186	0.0018324	569.3041492614179	32.501	0.31954	32.344	32.204	32.524	-0.15772					12	7	2	0	0	0	0.024466	1	2212	2212		39.253	21.888	1	493260	+		62897	26560	44284	44346	68137	68137					0.027149389141186475
QLLETLNQL	9	Unmodified	_QLLETLNQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3059692382812	2	536.305864	1070.59717	-0.94148	-0.00050492	1.374	0.0007369	0.43254	0.00023197	536.3064167808398	78.237	2.0678	78.253	77.948	80.016	0.015907					82	49	4	0	0	0	0.32811	1	9608	9608		71.877	7.6702	1	1835400			62898	10381	44285	44347	68138	68138					0.06469994786198185
QLLFCCLLW	9	Unmodified	_QLLFCCLLW_					0	0	0			REV__ENST00000373839.7_1_1:28823070-28823136:+|nuORF	REV__ENST00000373839.7_1_1:28823070-28823136:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7740478515625	2	569.793023	1137.57149	-0.1414	-8.0568E-05	-1.4456	-0.00082367	-1.587	-0.00090424	569.7920841742043	78.275	0.51477	78.02	77.826	78.34	-0.25471					21	11	2	0	0	0	0.024466	1	9307	9307		33.516	7.9415	1	966080	+		62899	31272	44286	44348	68139	68139					0.008211057385551612
QLLFEEPE	8	Unmodified	_QLLFEEPE_					0	0	0			REV__chr2:127388998-127389111|517|15.45|0.0|20.56|+|0|MAP3K2-DT,MAP3K2-DT|1	REV__chr2:127388998-127389111|517|15.45|0.0|20.56|+|0|MAP3K2-DT,MAP3K2-DT|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2643127441406	2	502.75039	1003.48623	-0.26705	-0.00013426	-1.2708	-0.00063889	-1.5378	-0.00077314	502.74969281139784	75.865	0.464	75.606	75.358	75.822	-0.25866					15	11	2	0	0	0	0.027866	1	9008	9008		12.207	0	1	69240	+		62900	19405	44287	44349	68140	68140					-0.015376449219047572
QLLFIDRTE	9	Unmodified	_QLLFIDRTE_					0	0	0		ENST00000563352.1_1_16:56940940-56947361:+|nuORF	ENST00000563352.1_1_16:56940940-56947361:+|nuORF	ENST00000563352.1_1_16:56940940-56947361:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.8025512695312	2	567.811313	1133.60807	-1.0452	-0.00059348	3.6701	0.0020839	2.6249	0.0014905	567.8132069746752	80.92	1.2026	80.92	80.667	81.869	0					56	29	3	0	0	0	0.024017	1	10166	10166		75.043	0	1	251570			62901	16866	44288	44350	68141	68141					0.04661397160475644
QLLFLFPEFS	10	Unmodified	_QLLFLFPEFS_					0	0	0		nc|ENSG00000275410|P35680-3|HNF1B;ENSG00000275410|ENST00000617811|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	nc|ENSG00000275410|P35680-3|HNF1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2586669921875	3	414.225264	1239.65396	-1.1967	-0.00049569	-1.0942	-0.00045324	-2.2909	-0.00094893	414.5591232981272	38.681	0.57719	38.51	38.143	38.721	-0.17133					42	15	4	0	0	0	0.03519	1	3232	3232		26.063	6.0329	1	194960			62902	18795	44289	44351	68142	68142					0.043720423426975685
QLLFVAAAF	9	Unmodified	_QLLFVAAAF_					0	0	0		nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.279296875	2	490.284203	978.553853	-0.11464	-5.6208E-05	0.225	0.00011031	0.11036	5.4106E-05	490.2850197422966	60.224	0.84298	59.975	59.457	60.3	-0.24842					36	21	3	0	0	0	0.024466	1	6611	6611		33.516	6.7195	1	177600			62903	18557	44290	44352	68143	68143					0.06371849799552365
QLLFVAAAF	9	Unmodified	_QLLFVAAAF_					0	0	0		nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.284203	978.553853	1.0721	0.00052562	-6.2737	-0.0030759	-5.2016	-0.0025503	490.2806847065651	59.931	0.28165	59.931	59.745	60.027	0	0.015129	-0.0028046	NaN	25.45	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94081			62904	18557	44290	44352							0.06371849799552365
QLLFVAAAF	9	Unmodified	_QLLFVAAAF_					0	0	0		nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	nc|ENSG00000180068|P47883|OR3A4P	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.284203	978.553853	-0.74987	-0.00036765	-3.7665	-0.0018467	-4.5164	-0.0022143	490.2819704396089	59.756	0.32657	59.842	59.692	60.018	0.085682	-0.0742	-0.00034619	NaN	25.45	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102110			62905	18557	44290	44352							0.06371849799552365
QLLFYRID	8	Unmodified	_QLLFYRID_					0	0	0			REV__ENST00000335508.10_1_2:198270141-198272747:-|nuORF	REV__ENST00000335508.10_1_2:198270141-198272747:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.774169921875	2	534.297842	1066.58113	-0.34081	-0.0001821	-0.18333	-9.7955E-05	-0.52415	-0.00028005	534.297593884138	47.254	0.70281	47.157	46.682	47.385	-0.096649					49	18	4	0	0	0	0.027866	1	4644	4644		31.955	11.008	1	1288200	+		62906	30532	44291	44353	68144	68144					0.05050333339931967
QLLGFQNL	8	Unmodified	_QLLGFQNL_					0	0	0		ENSG00000197591|ENST00000355784|OR11L1;OR11L1|p.R234Lfs*36|1|0.24|ENSG00000197591|chr1:247841196-247841197|-/A|frameshift_variant	ENSG00000197591|ENST00000355784|OR11L1	ENSG00000197591|ENST00000355784|OR11L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7644958496094	2	466.763635	931.512717	0.41126	0.00019196	-0.24371	-0.00011375	0.16755	7.8207E-05	466.7634096958611	69.758	0.6471	69.771	69.424	70.071	0.012421					45	15	4	0	0	0	0.39824	1	8354	8354		97.473	3.4663	1	3795700			62907	10020	44292	44354	68145	68145					0.04422088760088627
QLLGHMEDL	9	Unmodified	_QLLGHMEDL_					0	0	0		ENSG00000116863|ENST00000373178|ADPRS	ENSG00000116863|ENST00000373178|ADPRS	ENSG00000116863|ENST00000373178|ADPRS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.292724609375	2	528.263142	1054.51173	-0.36837	-0.00019459	3.3981	0.0017951	3.0298	0.0016005	528.767536252259	54.66	0.51876	54.509	54.339	54.857	-0.15036					23	14	2	0	0	0	0.024319	1	6014	6014		39.253	4.0521	1	236300			62908	3586	44293	44355	68146	68146					-0.013344936711291666
QLLGQVQLTF	10	Unmodified	_QLLGQVQLTF_					0	0	0			REV__ENSG00000184163|ENST00000330388|C1QTNF12;REV__ENST00000462849.1_1_1:1177930-1178707:-|nuORF	REV__ENSG00000184163|ENST00000330388|C1QTNF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.8277587890625	2	573.829506	1145.64446	0.036871	2.1158E-05	0.79384	0.00045553	0.83071	0.00047669	573.8299262502593	74.009	1.2227	73.738	73.384	74.606	-0.27126					52	29	2	0	0	0	0.66532	1	9023	9023		69.628	0	1	2786600	+		62909	27641;32916	44294	44356	68147	68147					0.07746274057149094
QLLGREALL	9	Unmodified	_QLLGREALL_					0	0	0			REV__ENSG00000182327|ENST00000331264|GLTPD2	REV__ENSG00000182327|ENST00000331264|GLTPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8121337890625	2	506.811116	1011.60768	-0.18697	-9.4759E-05	-0.59738	-0.00030276	-0.78435	-0.00039752	506.8109227453703	54.675	1.2537	54.525	54.156	55.409	-0.15036					111	35	5	0	0	0	0.28753	1	6002	6002		77.318	10.888	1	35785000	+		62910	27469	44295	44357	68148	68148					0.10234022231270501
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.25537109375	2	477.256174	952.497795	0.90653	0.00043265	0.074427	3.5521E-05	0.98095	0.00046817	477.2557371752762	41.456	1.2365	41.456	41.085	42.322	0					126	35	7	0	0	0	0.27161	2	3729	3729;3741		79.451	16.145	1	5488400			62911	10033	44296	44358	68149;68150	68149					0.019645968920826817
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2557373046875	2	477.256174	952.497795	0.14556	6.947E-05	0.16456	7.8538E-05	0.31012	0.00014801	477.25609237097115	41.619	1.0694	41.642	41.182	42.252	0.023006					96	30	5	0	0	0	0.20967	1	3708	3708		87.754	13.78	1	5221700			62912	10033	44296	44358	68151	68151					0.019645968920826817
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.2562255859375	2	477.256174	952.497795	0.20706	9.8819E-05	0.036975	1.7647E-05	0.24403	0.00011647	477.2560150235621	41.572	0.67491	41.436	41.099	41.774	-0.13553					49	17	4	0	0	0	0.18915	1	3691	3691		90.777	5.4172	1	2726200			62913	10033	44296	44358	68152	68152					0.019645968920826817
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.2561340332031	2	477.256174	952.497795	-0.38142	-0.00018203	0.51825	0.00024734	0.13683	6.5304E-05	477.256240233275	41.758	1.0024	41.53	41.236	42.238	-0.2278					63	26	4	0	0	0	0.17455	1	3695	3695		94.006	17.16	1	2549200			62914	10033	44296	44358	68153	68153					0.019645968920826817
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.25616455078125	2	477.256174	952.497795	-0.080421	-3.8381E-05	0.19878	9.487E-05	0.11836	5.6488E-05	477.2560603274296	41.801	0.79148	41.571	41.274	42.065	-0.2303					57	21	5	0	0	0	0.039744	3	3691	3691;3702;3714		133.81	27.397	1	2797700			62915	10033	44296	44358	68154;68155;68156	68154					0.019645968920826817
QLLHECFDL	9	Unmodified	_QLLHECFDL_					0	0	0		nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;CFAP61|p.Y/YNRYHLPMYAWPGIVX1223Y/YNRYHLPMYAWPGIVX|1|0.2|ENSG00000089101|chr20:20360364-20360365|-/TAACCGCTACCACCTGCCCATGTACGCGTGGCCAGGCATCGTT|frameshift_variant;nc|ENSG00000089101|Q8NHU2-3|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.29248046875	2	559.270967	1116.52738	-0.11217	-6.2735E-05	0.11574	6.4727E-05	0.0035632	1.9928E-06	559.270890707904	75.967	0.58144	75.791	75.507	76.088	-0.17548					20	14	2	0	0	0	0.024495	1	9036	9036		34.173	6.2903	1	211950			62916	259	44297	44359	68157	68157					-0.026222071540814795
QLLHFLLD	8	Unmodified	_QLLHFLLD_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7951354980469	2	499.78711	997.559667	0.44945	0.00022463	-4.1013	-0.0020498	-3.6518	-0.0018251	499.78455581391063	58.326	0.76882	58.326	57.982	58.75	0					31	20	3	0	0	0	0.027866	1	6615	6615		60.294	3.5729	1	722810			62917	5400	44298	44360	68158	68158					0.06078948311221666
QLLHLFGPA	9	Unmodified	_QLLHLFGPA_					0	0	0			REV__nc|ENSG00000231852|P08686-2|CYP21A2	REV__nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.9022521972656	2	498.287277	994.560001	-1.0676	-0.00053196	-3.2107	-0.0015999	-4.2783	-0.0021318	498.28548909476643	43.437	0.90762	43.211	42.912	43.82	-0.22597					49	24	3	0	0	0	0.024517	1	4065	4065		26.796	14.589	1	1891000	+		62918	28899	44299	44361	68159	68159					0.06250368031089693
QLLHPPLVP	9	Unmodified	_QLLHPPLVP_					0	0	0		nc|ENSG00000184274|P59091|LINC00315	nc|ENSG00000184274|P59091|LINC00315	nc|ENSG00000184274|P59091|LINC00315	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2945251464844	2	507.310752	1012.60695	-0.27228	-0.00013813	0.35655	0.00018088	0.084273	4.2752E-05	507.8131894238981	94.781	0.60652	94.781	94.444	95.05	0					16	13	2	0	0	0	0.024412	1	12027	12027		40.573	14.999	1	140290			62919	18584	44300	44362	68160	68160					0.10115227582230091
QLLIPLEEL	9	Unmodified	_QLLIPLEEL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.3203125	2	534.320983	1066.62741	-0.80226	-0.00042866	0.60636	0.00032399	-0.1959	-0.00010467	534.3211505721415	96.377	0.8007	96.377	95.991	96.792	0					50	18	4	0	0	0	0.42604	1	12298	12298		64.207	3.2353	1	1239800			62920	4485	44301	44363	68161	68161					0.09676353451391151
QLLIPLEEL	9	Unmodified	_QLLIPLEEL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.3207397460938	2	534.320983	1066.62741	0.22008	0.00011759	-0.48784	-0.00026067	-0.26777	-0.00014307	534.3205735247114	96.297	1.0643	96.304	95.905	96.969	0.0065002					58	24	4	0	0	0	0.39228	1	12239	12239		66.429	3.123	1	1162000			62921	4485	44301	44363	68162	68162					0.09676353451391151
QLLKELPSV	9	Unmodified	_QLLKELPSV_					0	0	0		PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8145751953125	2	513.813325	1025.6121	0.3752	0.00019278	-0.70482	-0.00036215	-0.32962	-0.00016936	513.8130107014696	60.047	1.6266	60.047	59.257	60.884	0					85	43	3	0	0	0	0.030064	1	6879	6879		141.52	0	1	10724000			62922	18988	44302	44364	68163	68163					0.10031486654179389
QLLKELPSV	9	Unmodified	_QLLKELPSV_					0	0	0		PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8135986328125	2	513.813325	1025.6121	-1.4228	-0.00073107	1.0747	0.00055218	-0.34816	-0.00017889	513.8139394840836	59.951	1.6467	60.03	59.419	61.066	0.078888					86	43	3	0	0	0	0.01388	2	6772	6772;6782		180.87	0	1	9441900			62923	18988	44302	44364	68164;68165	68164					0.10031486654179389
QLLKELPSV	9	Unmodified	_QLLKELPSV_					0	0	0		PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	PPP6R1|p.E497V|1|0.2|ENSG00000105063|chr19:55239899-55239899|T/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.8131103515625	2	513.813325	1025.6121	-0.3796	-0.00019505	0.16437	8.4455E-05	-0.21523	-0.00011059	513.8133388445855	60.306	0.81695	60.053	59.604	60.421	-0.25373					54	20	3	0	0	0	0.020687	1	6693	6693		148.99	0	1	1894700			62924	18988	44302	44364	68166	68166					0.10031486654179389
QLLKVKSSL	9	Unmodified	_QLLKVKSSL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.8088684082031	2	508.329142	1014.64373	0.98411	0.00050025	-0.9588	-0.00048739	0.025307	1.2864E-05	508.3285248369275	18.1	0.29496	17.944	17.755	18.05	-0.15637					10	5	2	0	0	0	0.024397	1	264	264		47.657	6.8792	1	31020	+		62925	21936	44303	44365	68167	68167					0.1369947940813745
QLLKVKSSL	9	Unmodified	_QLLKVKSSL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.329142	1014.64373	-0.14028	-7.1308E-05	0.35803	0.000182	0.21775	0.00011069	508.32918107232655	18.14	0.29702	17.933	17.764	18.061	-0.20669	0.0075175	0.0014651	NaN	47.657	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38094	+		62926	21936	44303	44365							0.1369947940813745
QLLKVKSSL	9	Unmodified	_QLLKVKSSL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.329142	1014.64373	3.4505	0.001754	-3.0021	-0.0015261	0.44836	0.00022791	508.32756131415	18.142	0.29741	17.899	17.726	18.024	-0.24256	-0.02606	-0.001951	NaN	47.657	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20869	+		62927	21936	44303	44365							0.1369947940813745
QLLLELMGI	9	Unmodified	_QLLLELMGI_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3069458007812	2	515.304278	1028.594	0.88113	0.00045405	1.2938	0.00066673	2.175	0.0011208	515.3047557853234	20.461	0.49359	20.265	20.04	20.533	-0.19577					21	9	3	0	0	0	0.70186	1	550	550		45.952	3.5558	1	229180			62928	2903	44304	44366	68168	68168					0.0808502840784513
QLLLETAYV	9	Unmodified	_QLLLETAYV_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2973022460938	2	525.297507	1048.58046	-1.809	-0.00095024	-1.0478	-0.0005504	-2.8567	-0.0015006	525.2971536986481	28.968	0.87311	28.968	28.655	29.528	0					52	21	4	0	0	0	0.59099	1	1747	1747		53.351	1.0523	1	2429500	+		62929	19175	44305	44367	68169	68169					0.05811493900205278
QLLLKGAVR	9	Unmodified	_QLLLKGAVR_					0	0	0		ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.27471923828125	2	499.329476	996.6444	0.82531	0.0004121	-1.0884	-0.00054347	-0.26309	-0.00013137	499.32882283414136	20.461	0.39483	20.265	20.04	20.435	-0.19577					15	7	3	0	0	0	0.024374	1	515	515		32.812	0	1	80054			62930	8835	44306	44368	68170	68170					0.1459431884784408
QLLLKNEKKWF	11	Unmodified	_QLLLKNEKKWF_					0	0	0			REV__nc|ENSG00000155816|Q9NZ56-2|FMN2	REV__nc|ENSG00000155816|Q9NZ56-2|FMN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.8003845214844	3	482.953767	1445.83947	0.33429	0.00016145	2.7906	0.0013477	3.1249	0.0015092	482.9552855194103	19.944	0.29258	19.778	19.573	19.866	-0.16546					8	5	2	0	0	0	0.024801	1	484	484		12.957	2.8536	1	9010.3	+		62931	25029	44307	44369	68171	68171					0.13438444862163124
QLLLLAPG	8	Unmodified	_QLLLLAPG_					0	0	0			REV__ENSG00000100985|ENST00000372330|MMP9	REV__ENSG00000100985|ENST00000372330|MMP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7430725097656	2	412.765646	823.516739	0.17661	7.2898E-05	2.7194	0.0011225	2.896	0.0011954	412.76686262360636	37.509	0.8882	37.541	37.035	37.923	0.032269					33	23	2	0	0	0	0.027866	1	2995	2995		21.702	0	1	68601	+		62932	21170	44308	44370	68172	68172					0.0979217825380374
QLLLLARGF	9	Unmodified	_QLLLLARGF_					0	0	0		ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	ENSG00000221855|ENST00000408916|TAS2R41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.8321533203125	2	515.824027	1029.6335	0.059107	3.0489E-05	-4.1278	-0.0021292	-4.0687	-0.0020987	515.8215865204606	18.114	0.24746	17.908	17.813	18.061	-0.20669					6	4	2	0	0	0	0.024487	1	250	250		17.365	0	1	13037			62933	10615	44309	44371	68173	68173					0.11986916473551901
QLLLLRYDG	9	Unmodified	_QLLLLRYDG_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2753295898438	2	545.816399	1089.61824	-1.1127	-0.00060731	0.31066	0.00016956	-0.80201	-0.00043775	545.8161208121157	77.803	0.99541	77.819	77.32	78.315	0.015907					36	23	2	0	0	0	0.021513	1	9514	9514		93.195	0.052222	1	152380			62934	7173	44310	44372	68174	68174					0.07702004885709357
QLLLLVSP	8	Unmodified	_QLLLLVSP_					0	0	0			REV__ENST00000504376.6_1_5:22505402-22853218:-|nuORF	REV__ENST00000504376.6_1_5:22505402-22853218:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7878723144531	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	1.0338	1	3601	3601		31.955	3.7006	1	35892000	+		62935	33981	44311	44373	68175	68175					0.11308733942325944
QLLLLVSP	8	Unmodified	_QLLLLVSP_					0	0	0			REV__ENST00000504376.6_1_5:22505402-22853218:-|nuORF	REV__ENST00000504376.6_1_5:22505402-22853218:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.788330078125	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	1.0338	1	3604	3604		31.955	3.7006	1	39693000	+		62936	33981	44311	44373	68176	68176					0.11308733942325944
QLLLTPVV	8	Unmodified	_QLLLTPVV_					0	0	0			REV__nc|ENSG00000243649|P00751-2|CFB	REV__nc|ENSG00000243649|P00751-2|CFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.788330078125	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	1.0574	1	3556	3556		26.796	1.3459	1	39693000	+		62937	37163	44312	44374	68177	68177					0.11308733942325944
QLLMEIRSAE	10	Unmodified	_QLLMEIRSAE_					0	0	0		ENST00000379463.6_1_16:66857463-66860609:-|nuORF	ENST00000379463.6_1_16:66857463-66860609:-|nuORF	ENST00000379463.6_1_16:66857463-66860609:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.8060302734375	2	595.315906	1188.61726	-0.69257	-0.0004123	-1.1644	-0.00069317	-1.8569	-0.0011055	595.3160914370873	66.181	0.71743	65.94	65.583	66.301	-0.24145					28	17	3	0	0	0	0.03519	1	7547	7547		21.686	2.3258	1	241300			62938	13265	44313	44375	68178	68178					0.0304942245447819
QLLNPEIEA	9	Unmodified	_QLLNPEIEA_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.303955078125	2	513.776939	1025.53933	-0.63426	-0.00032587	-0.04862	-2.498E-05	-0.68288	-0.00035085	513.7758881697063	29.91	0.5695	29.919	29.677	30.247	0.0086708					30	13	3	0	0	0	0.024205	1	1845	1845		44.117	1.2525	1	154350			62939	4580	44314	44376	68179	68179					0.027577328607549134
QLLNPEIEA	9	Unmodified	_QLLNPEIEA_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.776939	1025.53933	-0.51591	-0.00026506	1.4276	0.00073347	0.91169	0.0004684	513.7773506701081	29.986	0.42224	29.742	29.482	29.905	-0.24415	-0.061621	0.0011358	NaN	44.117	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223490			62940	4580	44314	44376							0.027577328607549134
QLLNPEIEA	9	Unmodified	_QLLNPEIEA_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.776939	1025.53933	-0.81268	-0.00041754	1.4712	0.00075585	0.65848	0.00033831	513.7775202062098	29.841	0.46613	29.668	29.406	29.872	-0.17258	-0.13496	0.0011806	NaN	44.117	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357810			62941	4580	44314	44376							0.027577328607549134
QLLNRALRTK	10	Unmodified	_QLLNRALRTK_					0	0	0			REV__ENSG00000157353|ENST00000288078|FCSK	REV__ENSG00000157353|ENST00000288078|FCSK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.8876953125	3	404.922689	1211.74624	0.83934	0.00033987	-0.045664	-1.8491E-05	0.79368	0.00032138	404.9224474013207	22.357	0.3667	22.168	22.007	22.374	-0.18894					12	7	2	0	0	0	0.03519	1	810	810		9.6461	0	1	94335	+		62942	25126	44315	44377	68180	68180					0.14883565199579607
QLLPLFLL	8	Unmodified	_QLLPLFLL_					0	0	0			REV__nc|ENSG00000131650|Q8NCW0-2|KREMEN2	REV__nc|ENSG00000131650|Q8NCW0-2|KREMEN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7691955566406	2	478.812596	955.61064	0.10982	5.2585E-05	-4.3624	-0.0020888	-4.2526	-0.0020362	478.8103477404459	41.253	0.54223	41.117	40.83	41.372	-0.13553					31	13	3	0	0	0	0.027866	1	3589	3589		29.842	1.9593	1	473050	+		62943	36658	44316	44378	68181	68181					0.13105897356092555
QLLPLIVNL	9	Unmodified	_QLLPLIVNL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENSG00000137040|ENST00000259569|RANBP6	nc|ENSG00000065150|O00410-2|IPO5;ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.83416748046875	2	511.83406	1021.65357	-0.36133	-0.00018494	0.44472	0.00022762	0.083391	4.2682E-05	511.83404227922773	101.55	0.66409	101.55	101.24	101.91	0					31	14	3	0	0	0	0.75397	1	13024	13024		42.396	1.618	1	218830			62944	5081;1293	44317	44379	68182	68182					0.14360667413529882
QLLPQVTDEW	10	Unmodified	_QLLPQVTDEW_					0	0	0			REV__nc|ENSG00000025770|Q6IBW4-2|NCAPH2	REV__nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	615.2830200195312	2	614.814053	1227.61355	0.10978	6.7493E-05	3.2486	0.0019973	3.3584	0.0020648	614.8161983509219	55.069	0.3947	54.862	54.685	55.08	-0.20613					17	10	2	0	0	0	0.03519	1	5903	5903		40.778	7.9657	1	132620	+		62945	20022	44318	44380	68183	68183					0.008850759523056695
QLLPVPIA	8	Unmodified	_QLLPVPIA_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-4|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7491455078125	2	425.773471	849.53239	-0.3944	-0.00016793	-1.6393	-0.00069799	-2.0337	-0.00086592	425.77284314267627	26.075	0.3119	25.839	25.636	25.948	-0.23603					10	7	2	0	0	0	0.027866	1	1309	1309		1.4648	0	1	44948			62946	2812	44319	44381	68184	68184					0.10160464770842736
QLLPVPIA	8	Unmodified	_QLLPVPIA_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-4|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	425.773471	849.53239	-0.76609	-0.00032618	-2.147	-0.00091416	-2.9131	-0.0012403	425.77242623110635	25.971	0.37848	25.808	25.544	25.922	-0.16331	0.05055	-9.1732E-06	NaN	1.4648	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57396			62947	2812	44319	44381							0.10160464770842736
QLLQFLYSKIL	11	Unmodified	_QLLQFLYSKIL_					0	0	0			REV__ENST00000554619.5_1_12:56361683-56363594:+|nuORF	REV__ENST00000554619.5_1_12:56361683-56363594:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.8883361816406	3	455.942868	1364.80677	-0.15864	-7.2331E-05	0.38489	0.00017549	0.22625	0.00010316	455.94278953130464	37.65	0.17892	37.65	37.523	37.702	0					5	4	2	0	0	0	0.024789	1	3095	3095		50.791	0	1	75580	+		62948	22692	44320	44382	68185	68185					0.13896237739322714
QLLQRDLEV	9	Unmodified	_QLLQRDLEV_					0	0	0		ENST00000470731.5_1_7:2598728-2641152:+|nuORF;nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	ENST00000470731.5_1_7:2598728-2641152:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.2991943359375	2	557.316763	1112.61897	0.23694	0.00013205	3.3415	0.0018623	3.5784	0.0019943	557.3185105458375	67.648	1.172	67.648	66.968	68.14	0					69	29	3	0	0	0	0.023837	1	8146	8146		74.255	0.28031	1	991860			62949	2748	44321	44383	68186	68186					0.06716799534751772
QLLQWVCDLF	10	Unmodified	_QLLQWVCDLF_					0	0	0			REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF;REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.21771240234375	3	422.218003	1263.63218	-0.10295	-4.3465E-05	0.3721	0.00015711	0.26916	0.00011364	422.21808269954715	35.743	0.93011	35.53	34.886	35.816	-0.21246					47	24	4	0	0	0	0.75651	1	2743	2743		63.534	7.8128	1	1946800	+		62950	33698;36436	44322	44384	68187	68187					0.010909143224807849
QLLQWVCDLF	10	Unmodified	_QLLQWVCDLF_					0	0	0			REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF;REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	422.218003	1263.63218	-0.99088	-0.00041837	1.1095	0.00046845	0.11863	5.0086E-05	422.2182100685747	35.764	0.6038	35.764	35.492	36.096	0	0.15464	0.0010542	NaN	63.534	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645490	+		62951	33698;36436	44322	44384							0.010909143224807849
QLLQWVCDLF	10	Unmodified	_QLLQWVCDLF_					0	0	0			REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF;REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	422.218003	1263.63218	-1.09	-0.00046023	0.90251	0.00038106	-0.18752	-7.9172E-05	422.2182469572029	35.614	0.57619	35.592	35.308	35.884	-0.021763	-0.016618	0.00079204	NaN	63.534	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611060	+		62952	33698;36436	44322	44384							0.010909143224807849
QLLQWVCDLF	10	Unmodified	_QLLQWVCDLF_					0	0	0			REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF;REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	422.218003	1263.63218	-0.23427	-9.8913E-05	0.13005	5.4907E-05	-0.10423	-4.4006E-05	422.2179319149577	35.651	0.71301	35.695	35.459	36.172	0.04406	0.085678	-0.00018641	NaN	63.534	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638440	+		62953	33698;36436	44322	44384							0.010909143224807849
QLLQWVCDLF	10	Unmodified	_QLLQWVCDLF_					0	0	0			REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF;REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	422.218003	1263.63218	-0.10295	-4.3465E-05	0.3721	0.00015711	0.26916	0.00011364	422.21808269954715	35.743	0.93011	35.53	34.886	35.816	-0.21246	-0.078776	0.00012019	NaN	63.534	47	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1946800	+		62954	33698;36436	44322	44384							0.010909143224807849
QLLQWVCDLF	10	Unmodified	_QLLQWVCDLF_					0	0	0			REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF;REV__nc|ENSG00000014914|A4FU01-4|MTMR11	REV__nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	422.218003	1263.63218	0.013901	5.8691E-06	-0.33577	-0.00014177	-0.32187	-0.0001359	422.2177978799922	35.651	0.48058	35.464	35.14	35.621	-0.18675	-0.14493	-0.00077644	NaN	63.534	46	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1567300	+		62955	33698;36436	44322	44384							0.010909143224807849
QLLRKTAE	8	Unmodified	_QLLRKTAE_					0	0	0			REV__nc|ENSG00000197879|O00159-2|MYO1C	REV__nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7311706542969	2	479.787641	957.56073	-0.19954	-9.5739E-05	0.057668	2.7668E-05	-0.14188	-6.807E-05	479.7876599653825	32.104	0.39686	32.115	31.902	32.299	0.011799					16	9	2	0	0	0	0.027866	1	2153	2153		58.782	0	1	206470	+		62956	28356	44323	44385	68188	68188					0.0802516268013278
QLLRKTAE	8	Unmodified	_QLLRKTAE_					0	0	0			REV__nc|ENSG00000197879|O00159-2|MYO1C	REV__nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7312927246094	2	479.787641	957.56073	-0.4943	-0.00023716	0.49717	0.00023853	0.0028685	1.3763E-06	479.78778377377375	30.696	1.1153	30.77	30.296	31.411	0.074314					55	26	3	0	0	0	0.027866	1	1993	1993		85.359	0	1	784900	+		62957	28356	44323	44385	68189	68189					0.0802516268013278
QLLRLFKL	8	Unmodified	_QLLRLFKL_					0	0	0		ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;nc|ENSG00000186815|Q9ULQ1-2|TPCN1	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2705688476562	2	515.84222	1029.66989	0.067001	3.4562E-05	-2.0308	-0.0010476	-1.9638	-0.001013	515.8410525828083	51.307	0.18317	51.307	51.248	51.431	0					6	4	2	0	0	0	0.027866	1	5423	5423		68.485	11.764	1	260830			62958	9579	44324	44386	68190	68190					0.15623793370264139
QLLRPCLTQ	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))QLLRPC(Carbamidomethyl (C))LTQ_	QLLRPC(1)LTQ		QLLRPC(64)LTQ		1	1	0			REV__ENST00000454520.6_1_12:50388252-50390839:-|nuORF	REV__ENST00000454520.6_1_12:50388252-50390839:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.8182373046875	2	585.818615	1169.62268	1.3018	0.00076263	-1.4929	-0.00087458	-0.1911	-0.00011195	585.8177074786114	19.038	3.0515	18.805	18.483	21.534	-0.23345					108	61	4	0	0	0	0.42604	1	370	370		64.207	11.118	1	956800	+		62959	32762	44325	44387	68191	68191	432				0.04465146036955048
QLLRQVPT	8	Unmodified	_QLLRQVPT_					0	0	0			REV__ENST00000464676.5_1_3:133698382-133748739:-|nuORF	REV__ENST00000464676.5_1_3:133698382-133748739:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7718200683594	2	477.790184	953.565815	0.1363	6.5124E-05	-0.041557	-1.9856E-05	0.094745	4.5268E-05	477.7899579025327	24.763	0.66138	24.763	24.474	25.135	0					28	14	3	0	0	0	0.027866	1	1101	1101		29.15	1.2673	1	144800	+		62960	32983	44326	44388	68192	68192					0.08717466542748298
QLLRQVPT	8	Unmodified	_QLLRQVPT_					0	0	0			REV__ENST00000464676.5_1_3:133698382-133748739:-|nuORF	REV__ENST00000464676.5_1_3:133698382-133748739:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	477.790184	953.565815	-0.84934	-0.00040581	1.0968	0.00052406	0.2475	0.00011825	477.79048911443164	24.882	0.5751	24.847	24.546	25.121	-0.034395	0.039264	0.00055211	NaN	42.396	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116380	+		62961	32983	44326	44388							0.08717466542748298
QLLSCAKLR	9	Unmodified	_QLLSCAKLR_					0	0	0		ENST00000534191.1_1_11:828562-829184:+|nuORF;ENST00000530737.2_1_11:828562-829423:+|nuORF	ENST00000534191.1_1_11:828562-829184:+|nuORF	ENST00000534191.1_1_11:828562-829184:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2738647460938	2	516.305144	1030.59573	-0.64512	-0.00033308	3.6354	0.001877	2.9903	0.0015439	516.3070215915341	45.273	0.22974	45.273	45.181	45.41	0					11	6	2	0	0	0	0.024466	1	4393	4393		39.253	5.3312	1	92145			62962	16241	44327	44389	68193	68193					0.08166082216416726
QLLSEPSQD	9	Unmodified	_QLLSEPSQD_					0	0	0			REV__ENSG00000105550|ENST00000593756|FGF21	REV__ENSG00000105550|ENST00000593756|FGF21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.8133239746094	2	508.748379	1015.4822	-0.27537	-0.0001401	-1.8249	-0.00092841	-2.1003	-0.0010685	508.7476640428099	93.039	0.42152	93.047	92.929	93.35	0.0077286					15	9	2	0	0	0	0.024405	1	11724	11724		35.618	0	1	53384	+		62963	21536	44328	44390	68194	68194					-0.0249173441561652
QLLSHILEV	9	Unmodified	_QLLSHILEV_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000473861.1_1_10:128908515-128926040:+|nuORF	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.3123168945312	2	526.310949	1050.60735	0.64027	0.00033698	-0.26711	-0.00014059	0.37315	0.00019639	526.3107167584886	70.77	0.61583	70.477	70.263	70.879	-0.29291					26	14	2	0	0	0	0.32811	1	8531	8531		71.877	10.906	1	756210			62964	6152	44329	44391	68195	68195					0.08406602511445271
QLLSHILEV	9	Unmodified	_QLLSHILEV_					0	0	0		ENSG00000150760|ENST00000623213|DOCK1;nc|ENSG00000150760|Q14185|DOCK1;ENST00000473861.1_1_10:128908515-128926040:+|nuORF	ENSG00000150760|ENST00000623213|DOCK1	ENSG00000150760|ENST00000623213|DOCK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.310949	1050.60735	-0.084066	-4.4245E-05	0.46977	0.00024725	0.3857	0.000203	526.3110498913865	70.431	0.57788	70.431	70.209	70.787	0	-0.048274	0.00044942	NaN	71.877	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557720			62965	6152	44329	44391							0.08406602511445271
QLLSVNGVSV	10	Unmodified	_QLLSVNGVSV_					0	0	0		ENSG00000148943|ENST00000278193|LIN7C;LIN7A|p.D153E|1|0.28|ENSG00000111052|chr12:80845754-80845754|G/T|missense_variant;ENST00000474252.1_1_19:49618516-49621276:+|nuORF;ENSG00000104863|ENST00000221459|LIN7B;ENST00000469137.5_1_19:49617849-49621627:+|nuORF;ENSG00000111052|ENST00000552864|LIN7A	ENSG00000148943|ENST00000278193|LIN7C;ENSG00000111052|ENST00000552864|LIN7A	ENSG00000148943|ENST00000278193|LIN7C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2958679199219	2	508.292756	1014.57096	0.82406	0.00041886	3.0263	0.0015382	3.8503	0.0019571	508.29414183707615	59.825	1.1004	59.825	59.482	60.582	0					66	29	3	0	0	0	0.6365	1	6851	6851		72.879	4.0924	1	4396300			62966	6059;3083	44330	44392	68196	68196					0.06425725614724342
QLLSVNGVSV	10	Unmodified	_QLLSVNGVSV_					0	0	0		ENSG00000148943|ENST00000278193|LIN7C;LIN7A|p.D153E|1|0.28|ENSG00000111052|chr12:80845754-80845754|G/T|missense_variant;ENST00000474252.1_1_19:49618516-49621276:+|nuORF;ENSG00000104863|ENST00000221459|LIN7B;ENST00000469137.5_1_19:49617849-49621627:+|nuORF;ENSG00000111052|ENST00000552864|LIN7A	ENSG00000148943|ENST00000278193|LIN7C;ENSG00000111052|ENST00000552864|LIN7A	ENSG00000148943|ENST00000278193|LIN7C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2955017089844	2	508.292756	1014.57096	-0.33563	-0.0001706	4.1728	0.002121	3.8371	0.0019504	508.2946710213666	60.047	0.86021	59.847	59.5	60.36	-0.20016					50	22	3	0	0	0	0.811	1	6878	6878		59.931	3.2097	1	3807000			62967	6059;3083	44330	44392	68197	68197					0.06425725614724342
QLLTFLIQL	9	Unmodified	_QLLTFLIQL_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.8392333984375	2	544.839342	1087.66413	-0.80282	-0.00043741	0.21972	0.00011971	-0.5831	-0.0003177	544.83928059042	72.762	0.98326	72.762	72.533	73.516	0					74	24	4	0	0	0	0.03666	2	8860	8860;8877		136.27	10.883	1	2701100	+		62968	20705	44331	44393	68198;68199	68198					0.12380650067939314
QLLTFLIQL	9	Unmodified	_QLLTFLIQL_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.839599609375	2	544.839342	1087.66413	-0.52911	-0.00028828	-0.16552	-9.0183E-05	-0.69463	-0.00037846	544.8390947341879	73.138	0.94149	72.867	72.596	73.538	-0.27126					71	23	5	0	0	0	0.03666	1	8883	8883		136.27	1.4574	1	2697400	+		62969	20705	44331	44393	68200	68200					0.12380650067939314
QLLTFLIQL	9	Unmodified	_QLLTFLIQL_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.83935546875	2	544.839342	1087.66413	-0.61471	-0.00033492	-0.034406	-1.8746E-05	-0.64911	-0.00035366	544.8391605197671	72.83	0.94888	72.84	72.57	73.519	0.0096512					67	23	4	0	0	0	0.1158	2	8794	8794;8805		107.01	5.4274	1	2563300	+		62970	20705	44331	44393	68201;68202	68201					0.12380650067939314
QLLTLPRKRSG	11	Unmodified	_QLLTLPRKRSG_					0	0	0			REV__ENSG00000162300|ENST00000294258|ZFPL1	REV__ENSG00000162300|ENST00000294258|ZFPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.8935546875	2	634.893503	1267.77245	-0.77889	-0.00049451	-1.0276	-0.0006524	-1.8065	-0.0011469	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	1.0465	1	13056	13056		26.063	0.48933	1	1853200	+		62971	25426	44332	44394	68203	68203					0.1492783437106482
QLLTLQGPG	9	Unmodified	_QLLTLQGPG_					0	0	0		ENST00000315082.8_1_16:723515-723827:+|nuORF	ENST00000315082.8_1_16:723515-723827:+|nuORF	ENST00000315082.8_1_16:723515-723827:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2802734375	2	463.768917	925.523281	0.44257	0.00020525	0.044634	2.07E-05	0.4872	0.00022595	463.76855578542416	41.123	0.67281	41	40.689	41.361	-0.12317					39	18	3	0	0	0	0.024436	1	3615	3615		38.806	26.599	1	1264000			62972	12127	44333	44395	68204	68204					0.05754071414526152
QLLTPLTFL	9	Unmodified	_QLLTPLTFL_					0	0	0			REV__ENST00000352456.7_1_19:41812819-41812942:+|nuORF	REV__ENST00000352456.7_1_19:41812819-41812942:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2881469726562	2	523.318243	1044.62193	-1.136	-0.00059447	-3.43	-0.001795	-4.5659	-0.0023894	523.3163293939268	28.34	0.52365	28.095	27.882	28.406	-0.24524					28	12	3	0	0	0	0.024381	1	1681	1681		29.15	0	1	372760	+		62973	30740	44334	44396	68205	68205					0.1014067465955577
QLLVFFVE	8	Unmodified	_QLLVFFVE_					0	0	0			REV__ENST00000393909.6_1_2:75879380-75881924:+|nuORF	REV__ENST00000393909.6_1_2:75879380-75881924:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7693786621094	2	497.784036	993.553519	0.33303	0.00016577	0.64698	0.00032206	0.98001	0.00048783	497.7868937345693	25.127	0.41984	25.207	24.916	25.336	0.08009					21	9	3	0	0	0	0.027866	1	1096	1096		12.959	0	1	65823	+		62974	31656	44335	44397	68206	68206					0.05648430079713762
QLLVSRALL	9	Unmodified	_QLLVSRALL_					0	0	0		ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6	ENSG00000124587|ENST00000304611|PEX6	ENSG00000124587|ENST00000304611|PEX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8127746582031	2	506.829309	1011.64407	0.56519	0.00028646	3.0959	0.0015691	3.6611	0.0018556	506.83088065004034	54.434	0.40835	54.532	54.361	54.769	0.098011					16	11	2	0	0	0	0.018452	1	5914	5914		98.629	0	1	455740			62975	4061	44336	44398	68207	68207					0.1387089912798274
QLLWMVWY	8	Unmodified	_QLLWMVWY_					0	0	0		OTOP1|p.L108V|1|0.09|ENSG00000163982|chr4:4226543-4226543|G/C|missense_variant	OTOP1|p.L108V|1|0.09|ENSG00000163982|chr4:4226543-4226543|G/C|missense_variant	OTOP1|p.L108V|1|0.09|ENSG00000163982|chr4:4226543-4226543|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.731689453125	2	569.791338	1137.56812	-0.38114	-0.00021717	-0.16159	-9.2075E-05	-0.54274	-0.00030925	569.7908806381224	72.926	0.54759	72.728	72.412	72.96	-0.1981					21	11	2	0	0	0	0.027866	1	8507	8507		4.3163	0	1	110120			62976	18932	44337	44399	68208	68208					0.004841789562078702
QLLYFPLIC	9	Unmodified	_QLLYFPLIC_					0	0	0		ENSG00000111700|ENST00000381545|SLCO1B3;nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	ENSG00000111700|ENST00000381545|SLCO1B3	ENSG00000111700|ENST00000381545|SLCO1B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2887573242188	2	555.306821	1108.59909	-0.19949	-0.00011078	-3.8692	-0.0021486	-4.0687	-0.0022594	555.3055827363393	65.361	0.1997	65.361	65.192	65.392	0					7	5	2	0	0	0	0.024357	1	7712	7712		35.201	0	1	90997			62977	3138	44338	44400	68209	68209					0.049133322704619786
QLMEGDKVYWP	11	Unmodified	_QLMEGDKVYWP_					0	0	0		nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.8880615234375	3	455.888434	1364.64347	-0.9577	-0.00043661	-0.75741	-0.00034529	-1.7151	-0.0007819	455.8884741154768	37.813	2.434	37.594	37.192	39.626	-0.2195					202	65	7	0	0	0	0.72615	1	3057	3057		62.166	0	1	45333000			62978	18544	44339	44401	68210	68210					-0.024263083740379443
QLMEQVAQL	9	Unmodified	_QLMEQVAQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2788696289062	2	530.278792	1058.54303	-0.74196	-0.00039345	0.80881	0.00042889	0.066843	3.5445E-05	530.2789120808791	69.289	1.2038	69.289	68.789	69.993	0					97	30	5	0	0	0	0.013065	5	8351	8328;8340;8351;8362;8377		215.39	48.712	1	11902000			62979	10381	44340	44402	68211;68212;68213;68214;68215	68213					0.016100793629675536
QLMEQVAQL	9	Unmodified	_QLMEQVAQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2781372070312	2	530.278792	1058.54303	0.22598	0.00011983	-0.066524	-3.5276E-05	0.15946	8.4556E-05	530.2783720309117	69.658	1.1048	69.365	68.933	70.038	-0.29292					87	27	5	0	0	0	0.010583	5	8352	8341;8352;8363;8375;8390		231.3	67.347	1	10405000			62980	10381	44340	44402	68216;68217;68218;68219;68220	68217					0.016100793629675536
QLMEQVAQL	9	Unmodified	_QLMEQVAQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2785034179688	2	530.278792	1058.54303	-0.5533	-0.0002934	0.93098	0.00049368	0.37768	0.00020027	530.2787771301712	69.371	1.0975	69.386	68.937	70.034	0.015121					95	27	5	0	0	0	0.008678	6	8285	8253;8263;8274;8285;8298;8313		247.94	67.016	1	8572900			62981	10381	44340	44402	68221;68222;68223;68224;68225;68226	68224					0.016100793629675536
QLMEQVAQL	9	Unmodified	_QLMEQVAQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.27734375	2	530.278792	1058.54303	-0.68019	-0.00036069	1.2259	0.00065007	0.54571	0.00028938	530.2786780500902	69.727	1.0386	69.46	69.121	70.159	-0.26725					48	24	4	0	0	0	0.043667	2	8088	8088;8099		131.03	12.288	1	1483800			62982	10381	44340	44402	68227;68228	68227					0.016100793629675536
QLMEQVAQL	9	Unmodified	_QLMEQVAQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2780151367188	2	530.278792	1058.54303	-0.32686	-0.00017333	0.89356	0.00047384	0.5667	0.00030051	530.2786814196927	69.63	0.98805	69.38	69.115	70.103	-0.25063					49	23	4	0	0	0	0.014918	2	8092	8092;8107		162.25	48.841	1	1583000			62983	10381	44340	44402	68229;68230	68229					0.016100793629675536
QLMEQVAQL	9	Unmodified	_QLMEQVAQL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2785034179688	2	530.278792	1058.54303	-0.092343	-4.8967E-05	0.16274	8.6298E-05	0.070399	3.7331E-05	530.278556790213	69.564	1.0238	69.342	69.103	70.127	-0.22245					37	24	2	0	0	0	0.043667	1	8083	8083		131.03	32.402	1	1386800			62984	10381	44340	44402	68231	68231					0.016100793629675536
QLMEQVAQL	9	Oxidation (M)	_QLM(Oxidation (M))EQVAQL_		QLM(1)EQVAQL		QLM(100)EQVAQL	0	0	1		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2745971679688	2	538.276249	1074.53795	-1.1381	-0.0006126	1.7221	0.00092698	0.58404	0.00031437	538.2768358655619	57.319	0.86217	57.414	57.014	57.876	0.095306					32	22	2	0	0	0	0.14024	1	6390	6390		101.6	13.904	1	4395800			62985	10381	44340	44403	68232	68232		441			0.0036577550035872264
QLMEQVAQL	9	Oxidation (M)	_QLM(Oxidation (M))EQVAQL_					0	0	1		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	538.276249	1074.53795	-0.25769	-0.00013871	4.9429	0.0026606	4.6852	0.0025219	538.7825779485376	57.577	1.0062	57.402	57.072	58.078	-0.1749	0.0081361	0.0027298	NaN	101.6	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5782800			62986	10381	44340	44403				441			0.0036577550035872264
QLMESLLEL	9	Oxidation (M)	_QLM(Oxidation (M))ESLLEL_		QLM(1)ESLLEL		QLM(130)ESLLEL	0	0	1		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.28564453125	2	546.286282	1090.55801	-0.64029	-0.00034978	0.46605	0.0002546	-0.17424	-9.5187E-05	546.2862951361227	84.357	0.54861	84.357	83.997	84.546	0					44	12	4	0	0	0	0.043667	1	10565	10565		131.03	10.41	1	2218100			62987	1429	44341	44404	68233	68233		46			0.01635526440304602
QLMESLLEL	9	Unmodified	_QLMESLLEL_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2887573242188	2	538.288825	1074.5631	-0.5528	-0.00029757	0.6476	0.0003486	0.094802	5.1031E-05	538.289016571707	89.635	0.8485	89.497	89.189	90.038	-0.13762					36	19	2	0	0	0	0.14024	1	10939	10939		101.6	5.4103	1	1287100			62988	1429	44341	44405	68234	68234					0.028798303029361705
QLMHGIKD	8	Unmodified	_QLMHGIKD_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532;ENST00000592249.5_1_18:56620439-56651695:+|nuORF;ENST00000590442.1_1_18:56648660-56651695:+|nuORF	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.24554443359375	2	471.247295	940.480036	-0.53732	-0.00025321	-3.2895	-0.0015502	-3.8268	-0.0018034	471.2456433428432	47.025	0.93951	46.832	46.545	47.484	-0.19387					62	25	4	0	0	0	0.74904	1	4572	4572		63.306	11.007	1	3611400			62989	1533	44342	44406	68235	68235					0.00741558365587025
QLMKLYWD	8	Unmodified	_QLMKLYWD_					0	0	0			REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8636474609375	2	548.778428	1095.5423	0.046349	2.5435E-05	1.0929	0.00059974	1.1392	0.00062518	548.7790092290094	36.906	0.47232	36.713	36.455	36.927	-0.193					26	11	3	0	0	0	0.027866	1	2893	2893		47.916	16.386	1	385830	+		62990	24192	44343	44407	68236	68236					-0.0016471528606416541
QLMKLYWD	8	Unmodified	_QLMKLYWD_					0	0	0			REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	548.778428	1095.5423	-0.57575	-0.00031596	2.0246	0.0011111	1.4489	0.00079512	548.779508556865	36.963	0.58705	36.744	36.488	37.076	-0.2195	0.020753	0.0007852	NaN	55.504	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405250	+		62991	24192	44343	44407							-0.0016471528606416541
QLMKLYWD	8	Unmodified	_QLMKLYWD_					0	0	0			REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	REV__ENST00000471953.5_1_1:93545083-93592837:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	548.778428	1095.5423	0.72665	0.00039877	1.0331	0.00056692	1.7597	0.00096569	548.7789588934155	36.922	0.4759	36.712	36.485	36.961	-0.2092	-0.010621	-0.00030311	NaN	55.504	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344690	+		62992	24192	44343	44407							-0.0016471528606416541
QLMKPLTV	8	Unmodified	_QLMKPLTV_					0	0	0			REV__nc|ENSG00000251608|P0DN82|OR12D1;REV__ENSG00000280236|ENST00000642051|OR12D2	REV__ENSG00000280236|ENST00000642051|OR12D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7643737792969	2	465.278063	928.541574	1.1562	0.00053796	-1.5497	-0.00072102	-0.39344	-0.00018306	465.27845749124367	33.092	0.66174	33.148	32.8	33.461	0.056568					32	17	3	0	0	0	0.027866	1	2339	2339		11.511	0	1	290610	+		62993	37169;29236	44344	44408	68237	68237					0.07444490064870024
QLMKPVTI	8	Unmodified	_QLMKPVTI_					0	0	0			REV__ENSG00000177151|ENST00000641268|OR2T35	REV__ENSG00000177151|ENST00000641268|OR2T35	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.280029296875	2	465.278063	928.541574	0.28089	0.00013069	4.0449	0.001882	4.3258	0.0020127	465.27981139819894	88.02	1.2618	87.888	87.477	88.739	-0.13254					76	30	4	0	0	0	1.0338	1	10739	10739		31.955	2.8053	1	1552700	+		62994	27085	44345	44409	68238	68238					0.07444490064881393
QLMLGHLLV	9	Unmodified	_QLMLGHLLV_					0	0	0		ENSG00000131323|ENST00000392745|TRAF3;nc|ENSG00000131323|Q13114-2|TRAF3;TRAF3|p.Q211Rfs*4|1|0.55|ENSG00000131323|chr14:102886248-102886248|C/-|frameshift_variant	ENSG00000131323|ENST00000392745|TRAF3	ENSG00000131323|ENST00000392745|TRAF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7717895507812	2	512.304613	1022.59467	-0.019809	-1.0148E-05	4.0026	0.0020506	3.9828	0.0020404	512.3064983588952	20.009	0.38028	19.842	19.669	20.049	-0.16774					19	7	4	0	0	0	0.024535	1	482	482		25.45	14.585	1	213330			62995	4510	44346	44410	68239	68239					0.0842786784752434
QLMNKQHRIRR	11	Unmodified	_QLMNKQHRIRR_					0	0	0			REV__ENST00000465503.5_1_4:27003889-27003958:+|nuORF	REV__ENST00000465503.5_1_4:27003889-27003958:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.76666259765625	3	493.952766	1478.83647	-0.2855	-0.00014102	3.9557	0.0019539	3.6702	0.0018129	493.9547547109997	32.277	0.87685	32.34	32.085	32.962	0.062885					52	22	4	0	0	0	0.024851	1	2192	2192		6.001	0.30226	1	307810	+		62996	33005	44347	44411	68240	68240					0.11620291256372184
QLMNLTDSR	9	Unmodified	_QLMNLTDSR_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2984619140625	2	539.271498	1076.52844	-1.0305	-0.00055569	-2.7247	-0.0014694	-3.7552	-0.0020251	539.2698594428541	27.643	0.29787	27.487	27.307	27.605	-0.15664					11	6	2	0	0	0	0.024477	1	1528	1528		27.882	0	1	102520			62997	4400	44348	44412	68241	68241					-0.006759927851817338
QLMPEDALD	9	Unmodified	_QLMPEDALD_					0	0	0		ENST00000572274.1_1_16:4391391-4409335:-|nuORF	ENST00000572274.1_1_16:4391391-4409335:-|nuORF	ENST00000572274.1_1_16:4391391-4409335:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2900390625	2	516.239332	1030.46411	-0.81074	-0.00041854	0.70211	0.00036245	-0.10863	-5.6081E-05	516.2395373286927	29.742	3.2801	29.497	27.55	30.83	-0.24524					148	77	3	0	0	0	0.024319	1	1646	1646		47.657	19.775	1	341780			62998	17056	44349	44413	68242	68242					-0.049901926619895676
QLMVEHDHET	10	Unmodified	_QLMVEHDHET_					0	0	0		nc|ENSG00000167139|Q8IYX1-2|TBC1D21;ENSG00000167139|ENST00000300504|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	nc|ENSG00000167139|Q8IYX1-2|TBC1D21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1947326660156	3	413.520522	1237.53974	1.6623	0.00068741	3.2673	0.0013511	4.9296	0.0020385	413.85681831133076	23.202	0.13756	23.011	22.897	23.034	-0.19117					4	2	2	0	0	0	0.03519	1	867	867		20.837	1.5745	1	15916			62999	7654	44351	44414	68243	68243					-0.06953215481712505
QLMWKTRLKYL	11	Unmodified	_QLMWKTRLKYL_					0	0	0			REV__ENSG00000203909|ENST00000370370|DPPA5	REV__ENSG00000203909|ENST00000370370|DPPA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.767578125	3	493.955002	1478.84318	-0.49769	-0.00024584	-0.39824	-0.00019671	-0.89593	-0.00044255	493.95480569281926	32.418	0.90319	32.43	32.182	33.085	0.011799					46	23	3	0	0	0	0.024851	1	2236	2236		9.6461	0	1	454350	+		63000	28555	44352	44415	68244	68244					0.12290791364375764
QLNDIFHL	8	Unmodified	_QLNDIFHL_					0	0	0		ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1	ENSG00000129167|ENST00000682019|TPH1	ENSG00000129167|ENST00000682019|TPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.8090515136719	2	500.266542	998.51853	-0.92936	-0.00046493	1.4762	0.00073852	0.54689	0.00027359	500.2671215676512	37.963	0.28422	37.741	37.613	37.898	-0.22149					12	7	2	0	0	0	0.027866	1	3102	3102		47.916	0	1	169540			63001	4334	44353	44416	68245	68245					0.01921187271761937
QLNDVQDID	9	Unmodified	_QLNDVQDID_					0	0	0			REV__ENST00000497929.1_1_3:124951187-125011317:-|nuORF	REV__ENST00000497929.1_1_3:124951187-125011317:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7972412109375	2	530.251286	1058.48802	-0.44057	-0.00023361	1.0377	0.00055025	0.59715	0.00031664	530.251896173465	54.674	0.76039	54.524	54.339	55.099	-0.15036					37	21	2	0	0	0	0.024319	1	5963	5963		56.721	3.7844	1	128390	+		63002	25646	44354	44417	68246	68246					-0.038886359039452145
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7971801757812	2	521.798206	1041.58186	-0.53192	-0.00027755	-0.52412	-0.00027348	-1.056	-0.00055104	521.7978972399856	44.714	0.57423	44.467	44.217	44.792	-0.2473					38	14	3	0	0	0	0.048057	1	4183	4183		129.42	22.414	1	926530			63003	618	44355	44418	68247	68247					0.0627312798899311
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.798206	1041.58186	-1.4709	-0.00076754	1.1901	0.00062101	-0.28081	-0.00014653	521.7983077727736	44.43	0.60716	44.43	44.151	44.758	0	-0.02588	0.0013109	NaN	129.42	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1961500			63004	618	44355	44418							0.0627312798899311
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.798206	1041.58186	-1.3591	-0.00070919	0.30737	0.00016038	-1.0518	-0.0005488	521.7978582654348	44.59	0.64052	44.441	44.19	44.83	-0.1488	-0.014569	0.00038962	NaN	129.42	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1817400			63005	618	44355	44418							0.0627312798899311
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.798206	1041.58186	-0.46881	-0.00024462	0.35554	0.00018552	-0.11326	-5.91E-05	521.7976087011733	44.432	0.64574	44.469	44.241	44.887	0.0369	0.013325	0.00043989	NaN	129.42	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1817200			63006	618	44355	44418							0.0627312798899311
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.798206	1041.58186	-1.1214	-0.00058514	0.018398	9.6002E-06	-1.103	-0.00057554	521.7980854449627	44.577	0.54115	44.473	44.203	44.744	-0.10468	0.016898	8.8051E-05	NaN	129.42	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	957960			63007	618	44355	44418							0.0627312798899311
QLNEKVAQL	9	Unmodified	_QLNEKVAQL_					0	0	0		CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant;ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	CYP51A1|p.C343Mfs*19|1|0.33|ENSG00000001630|chr7:92123179-92123180|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.798206	1041.58186	-0.77768	-0.00040579	-0.43073	-0.00022476	-1.2084	-0.00063055	521.7979535060707	44.665	0.57215	44.454	44.221	44.793	-0.21109	-0.0012914	-0.00038066	NaN	129.42	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1105500			63008	618	44355	44418							0.0627312798899311
QLNEQVHS	8	Unmodified	_QLNEQVHS_					0	0	0		nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	477.25604248046875	2	477.735606	953.456658	0.22134	0.00010574	-4.26	-0.0020351	-4.0386	-0.0019294	477.7336211285397	41.711	0.85293	41.588	41.035	41.888	-0.12299					36	22	2	0	0	0	0.027866	1	3674	3674		90.777	16.802	1	222350			63009	7637	44356	44419	68248	68248					-0.021931641473884156
QLNEQVMHQL	10	Unmodified	_QLNEQVMHQL_					0	0	0		nc|ENSG00000166974|Q15555-2|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.8768005371094	3	413.876529	1238.60776	-0.14895	-6.1646E-05	2.5262	0.0010455	2.3773	0.00098389	413.87667537461	29.925	1.5666	29.934	29.098	30.665	0.0086689					92	38	4	0	0	0	1.0545	1	1881	1881		38.754	1.2454	1	3462200			63010	18477	44357	44420	68249	68249					-0.0020034583103551995
QLNIKTFEF	9	Unmodified	_QLNIKTFEF_					0	0	0		ENST00000507953.1_1_4:38777992-38784603:-|nuORF	ENST00000507953.1_1_4:38777992-38784603:-|nuORF	ENST00000507953.1_1_4:38777992-38784603:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.2899780273438	2	570.308406	1138.60226	-0.35731	-0.00020378	3.2702	0.001865	2.9128	0.0016612	570.3101226682294	73.647	0.55592	73.376	73.09	73.646	-0.27126					33	14	3	0	0	0	0.024457	1	8989	8989		29.15	0.89528	1	2265000			63011	15774	44358	44421	68250	68250					0.038502986487856106
QLNPINLTE	9	Unmodified	_QLNPINLTE_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2816162109375	2	521.282389	1040.55022	-0.32384	-0.00016881	0.99133	0.00051676	0.66748	0.00034795	521.2828741398849	22.352	1.1196	22.167	21.618	22.738	-0.18539					56	23	4	0	0	0	0.70156	1	791	791		45.972	0	1	986830			63012	5188	44359	44422	68251	68251					0.031571352350511006
QLNQQLVE	8	Unmodified	_QLNQQLVE_					0	0	0			REV__nc|ENSG00000266173|Q7RTN6-4|STRADA	REV__nc|ENSG00000266173|Q7RTN6-4|STRADA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2919921875	2	486.261456	970.50836	0.23578	0.00011465	-1.8413	-0.00089537	-1.6056	-0.00078072	486.2606942261449	81.972	0.24025	81.862	81.803	82.043	-0.11006					7	5	2	0	0	0	0.027866	1	10215	10215		25.45	0	1	250410	+		63013	29140	44360	44423	68252	68252					0.021925795465108422
QLNQVGQVQ	9	Unmodified	_QLNQVGQVQ_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7998962402344	2	507.272355	1012.53016	-0.44004	-0.00022322	-2.8768	-0.0014593	-3.3168	-0.0016825	507.77338460342565	31.25	0.34547	31.098	30.887	31.232	-0.15231					14	8	3	0	0	0	0.023817	1	2051	2051		60.972	0	1	125460	+		63014	26716	44361	44424	68253	68253					0.024393842950985345
QLNRVLGPP	9	Unmodified	_QLNRVLGPP_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.8235778808594	2	497.295633	992.576714	-0.65246	-0.00032446	3.7415	0.0018606	3.089	0.0015361	497.2972565500071	69.694	1.5773	69.427	68.621	70.198	-0.26724					64	37	2	0	0	0	0.024466	1	8146	8146		33.516	3.674	1	155640	+		63015	25563	44362	44425	68254	68254					0.08012868917035121
QLNRVLGPP	9	Unmodified	_QLNRVLGPP_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.8240051269531	2	497.295633	992.576714	0.11234	5.5865E-05	3.0379	0.0015107	3.1502	0.0015666	497.2968358072536	69.602	1.5244	69.351	68.579	70.103	-0.25063					60	36	2	0	0	0	0.024412	1	8140	8140		40.573	20.576	1	212390	+		63016	25563	44362	44425	68255	68255					0.08012868917035121
QLNVRPQL	8	Unmodified	_QLNVRPQL_					0	0	0			REV__nc|ENSG00000189348|A6NNH2|FAM90A27P	REV__nc|ENSG00000189348|A6NNH2|FAM90A27P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2877197265625	2	484.287808	966.561064	0.25969	0.00012576	-0.34279	-0.00016601	-0.083105	-4.0247E-05	484.2876236834805	42.375	0.99752	42.375	41.825	42.823	0					43	28	3	0	0	0	0.68535	1	3891	3891		68.485	7.5128	1	4088400	+		63017	37045	44363	44426	68256	68256					0.07644582399984756
QLPALNLAR	9	Unmodified	_QLPALNLAR_					0	0	0			REV__nc|ENSG00000052841|Q96AE7-2|TTC17	REV__nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80078125	2	498.303458	994.592364	-0.5111	-0.00025468	0.76067	0.00037904	0.24957	0.00012436	498.3034569423458	31.238	0.66854	31.238	30.961	31.63	0					22	15	3	0	0	0	0.024405	1	2114	2114		27.882	6.9353	1	244420	+		63018	20175	44364	44427	68257	68257					0.09485155434083481
QLPAPQHPKI	10	Unmodified	_QLPAPQHPKI_					0	0	0		ENSG00000159128|ENST00000290219|IFNGR2	ENSG00000159128|ENST00000290219|IFNGR2	ENSG00000159128|ENST00000290219|IFNGR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.82763671875	2	564.82984	1127.64513	-0.41661	-0.00023532	-3.4185	-0.0019309	-3.8351	-0.0021662	564.8277874603832	30.991	0.71853	30.806	30.49	31.208	-0.18503					47	17	4	0	0	0	1.0393	1	2041	2041		40.778	4.4605	1	1260300			63019	6719	44365	44428	68258	68258					0.08641113496878461
QLPERRGTL	9	Unmodified	_QLPERRGTL_					0	0	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2366333007812	2	535.309272	1068.60399	-0.64487	-0.0003452	-2.2651	-0.0012125	-2.91	-0.0015577	535.3060188023755	69.469	0.61865	69.247	68.978	69.597	-0.22245					20	14	2	0	0	0	0.024381	1	8051	8051		29.15	6.1071	1	171770	+		63020	24003	44366	44429	68259	68259					0.07243352457408037
QLPICKLPL	9	Unmodified	_QLPICKLPL_					0	0	0		ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9-2|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1	ENSG00000197057|ENST00000639862|DTHD1	ENSG00000197057|ENST00000639862|DTHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7742309570312	2	512.814813	1023.61507	-0.23952	-0.00012283	3.9512	0.0020262	3.7117	0.0019034	512.8164437938024	45.789	0.71873	45.528	45.249	45.968	-0.26118					39	19	3	0	0	0	0.023417	1	4344	4344		49.442	10.635	1	573080			63021	9949	44367	44430	68260	68260					0.10421038507342928
QLPICKLPL	9	Unmodified	_QLPICKLPL_					0	0	0		ENSG00000197057|ENST00000639862|DTHD1;nc|ENSG00000197057|Q6ZMT9-2|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1	ENSG00000197057|ENST00000639862|DTHD1	ENSG00000197057|ENST00000639862|DTHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.774169921875	2	512.814813	1023.61507	-0.77531	-0.00039759	3.9026	0.0020013	3.1272	0.0016037	512.8167415216222	45.732	0.59956	45.53	45.293	45.892	-0.20226					31	16	3	0	0	0	0.024205	1	4332	4332		63.306	0	1	689550			63022	9949	44367	44430	68261	68261					0.10421038507342928
QLPIRSAL	8	Unmodified	_QLPIRSAL_					0	0	0			REV__nc|ENSG00000121577|Q9HBU9|POPDC2	REV__nc|ENSG00000121577|Q9HBU9|POPDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.268310546875	2	449.279452	896.544351	-1.0874	-0.00048854	0.79518	0.00035726	-0.29221	-0.00013128	449.2797358617784	48.97	1.0316	49.044	48.736	49.768	0.074196					72	27	4	0	0	0	0.027866	1	4960	4960		42.396	6.7778	1	4603100	+		63023	36616	44368	44431	68262	68262					0.09194081514044683
QLPLFSLY	8	Unmodified	_QLPLFSLY_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.7693176269531	2	490.776211	979.537869	-0.30723	-0.00015078	-3.7429	-0.0018369	-4.0501	-0.0019877	490.7741896528219	42.005	0.72608	41.773	41.508	42.234	-0.23186					49	19	4	0	0	0	0.027866	1	3813	3813		55.504	16.698	1	989320	+		63024	19378	44369	44432	68263	68263					0.047281435626587154
QLPLLHIF	8	Unmodified	_QLPLLHIF_					0	0	0			REV__ENST00000359358.8_1_18:30253844-30254171:-|nuORF	REV__ENST00000359358.8_1_18:30253844-30254171:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.796875	2	490.80002	979.585488	-0.95258	-0.00046753	0.53279	0.0002615	-0.41979	-0.00020603	490.8000613925582	47.737	0.68306	47.796	47.389	48.072	0.059093					37	20	2	0	0	0	0.027866	1	4772	4772		23.037	8.3726	1	1095700	+		63025	30878	44370	44433	68264	68264					0.09487842553517112
QLPLLLSL	8	Unmodified	_QLPLLLSL_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;ENST00000582319.5_1_17:72462842-72477477:+|nuORF;nc|ENSG00000167851|Q9UGN4-2|CD300A;nc|ENSG00000167851|Q9UGN4-4|CD300A	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.74078369140625	2	448.794404	895.574254	-0.78662	-0.00035303	-2.0769	-0.00093212	-2.8636	-0.0012852	448.79336455689935	30.915	0.75232	30.915	30.634	31.386	0					46	17	3	0	0	0	0.027866	1	1981	1981		62.978	10.679	1	1177300			63026	7743	44371	44434	68265	68265					0.12229020459392359
QLPLLLSL	8	Unmodified	_QLPLLLSL_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;ENST00000582319.5_1_17:72462842-72477477:+|nuORF;nc|ENSG00000167851|Q9UGN4-2|CD300A;nc|ENSG00000167851|Q9UGN4-4|CD300A	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	448.794404	895.574254	-0.17826	-8E-05	-2.6797	-0.0012026	-2.8579	-0.0012826	448.7930919939827	30.838	0.79677	30.85	30.627	31.424	0.011797	0.031965	-0.00028825	NaN	62.978	50	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904010			63027	7743	44371	44434							0.12229020459392359
QLPLLLSL	8	Unmodified	_QLPLLLSL_					0	0	0		ENSG00000167851|ENST00000360141|CD300A;ENST00000582319.5_1_17:72462842-72477477:+|nuORF;nc|ENSG00000167851|Q9UGN4-2|CD300A;nc|ENSG00000167851|Q9UGN4-4|CD300A	ENSG00000167851|ENST00000360141|CD300A	ENSG00000167851|ENST00000360141|CD300A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	448.794404	895.574254	-0.44467	-0.00019957	-2.4249	-0.0010883	-2.8696	-0.0012879	448.7932086786109	30.614	1.0721	30.688	30.42	31.492	0.074314	-0.12915	-5.9594E-05	NaN	62.978	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1172000			63028	7743	44371	44434							0.12229020459392359
QLPLNRTIP	9	Unmodified	_QLPLNRTIP_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2736206054688	2	526.316566	1050.61858	-0.33916	-0.00017851	0.23971	0.00012616	-0.099453	-5.2344E-05	526.3164492345759	58.387	0.59122	58.387	58.159	58.75	0					34	15	3	0	0	0	0.024477	1	6658	6658		27.882	0	1	480060			63029	4380	44372	44435	68266	68266					0.09529424605557324
QLPLPTGHI	9	Unmodified	_QLPLPTGHI_					0	0	0			REV__ENST00000498317.1_1_6:31919621-31919804:+|nuORF	REV__ENST00000498317.1_1_6:31919621-31919804:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7891845703125	2	488.284734	974.554916	-0.27605	-0.00013479	3.5447	0.0017308	3.2687	0.001596	488.285363244478	106.43	0.71112	106.43	106.15	106.86	0.00015259					44	25	3	0	0	0	0.85329	1	13570	13570		35.618	1.4457	1	209240	+		63030	33878	44373	44436	68267	68267					0.06662064168460802
QLPLRVLIV	9	Unmodified	_QLPLRVLIV_					0	0	0		ENSG00000077454|ENST00000310300|LRCH4;ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENSG00000077454|ENST00000310300|LRCH4	ENSG00000077454|ENST00000310300|LRCH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.7742919921875	2	525.855327	1049.6961	-1.15	-0.00060473	0.92871	0.00048837	-0.22128	-0.00011636	525.8561258954865	80.331	0.38084	80.331	80.163	80.544	0					12	8	2	0	0	0	0.024457	1	9989	9989		29.15	2.4566	1	31065			63031	1611	44374	44437	68268	68268					0.17324062541752028
QLPNFAFSV	9	Unmodified	_QLPNFAFSV_					0	0	0		ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENSG00000141002|ENST00000263346|TCF25	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.7691955566406	2	511.768917	1021.52328	0.36826	0.00018846	-0.59738	-0.00030572	-0.22912	-0.00011726	511.76855330880454	86.24	1.2731	86.24	85.543	86.816	0					60	29	4	0	0	0	0.11092	1	10845	10845		108.09	11.897	1	2090100			63032	5461	44375	44438	68269	68269					0.013380714145114325
QLPNFAFSV	9	Unmodified	_QLPNFAFSV_					0	0	0		ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENSG00000141002|ENST00000263346|TCF25	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.7691345214844	2	511.768917	1021.52328	-0.12728	-6.5138E-05	-0.024401	-1.2488E-05	-0.15168	-7.7625E-05	511.7688419503966	86.227	0.86201	86.182	85.778	86.64	-0.045105					48	19	4	0	0	0	0.091713	1	10799	10799		113.41	25.657	1	1995400			63033	5461	44375	44438	68270	68270					0.013380714145114325
QLPNFAFSV	9	Unmodified	_QLPNFAFSV_					0	0	0		ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENSG00000141002|ENST00000263346|TCF25	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.76953125	2	511.768917	1021.52328	-1.0099	-0.00051683	0.86479	0.00044257	-0.1451	-7.4259E-05	511.76926221651615	86.219	0.8615	86.243	85.86	86.722	0.023666					54	19	4	0	0	0	0.11092	2	10744	10744;10756		108.09	23.172	1	1899100			63034	5461	44375	44438	68271;68272	68271					0.013380714145114325
QLPNFAFSV	9	Unmodified	_QLPNFAFSV_					0	0	0		ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENSG00000141002|ENST00000263346|TCF25	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENST00000563636.5_1_16:89961526-89967207:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2875671386719	2	511.768917	1021.52328	0.14006	7.1677E-05	0.62497	0.00031984	0.76503	0.00039152	511.76910364604015	71.905	1.3136	71.643	71.2	72.513	-0.26199					52	31	3	0	0	0	0.024427	1	8394	8394		26.693	0	1	637300			63035	5461	44375	44438	68273	68273					0.013380714145114325
QLPPPHPSI	9	Unmodified	_QLPPPHPSI_					0	0	0		ENST00000521578.5_1_8:142431962-142432205:+|nuORF	ENST00000521578.5_1_8:142431962-142432205:+|nuORF	ENST00000521578.5_1_8:142431962-142432205:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2784729003906	2	493.276909	984.539266	-0.50596	-0.00024958	3.7492	0.0018494	3.2433	0.0015998	493.27865839372055	20.663	1.3767	20.44	20.216	21.593	-0.22344					51	27	2	0	0	0	0.80658	1	568	568		38.806	3.1879	1	584800			63036	16006	44376	44439	68274	68274					0.04637777651419128
QLPPRYETT	9	Unmodified	_QLPPRYETT_					0	0	0		ENST00000354485.5_1_9:732324-732786:+|nuORF	ENST00000354485.5_1_9:732324-732786:+|nuORF	ENST00000354485.5_1_9:732324-732786:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.755859375	2	552.787838	1103.56112	0.32045	0.00017714	1.2767	0.00070575	1.5972	0.00088289	552.7871177458314	22.587	0.79723	22.385	21.903	22.7	-0.20199					31	16	3	0	0	0	0.024427	1	797	797		34.173	0	1	126370			63037	12625	44377	44440	68275	68275					0.013485376093285595
QLPRDSPYM	9	Unmodified	_QLPRDSPYM_					0	0	0			REV__ENST00000552679.6_1_12:113266123-113285539:+|nuORF	REV__ENST00000552679.6_1_12:113266123-113285539:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2249145507812	2	553.768591	1105.52263	-0.47319	-0.00026204	0.30042	0.00016637	-0.17276	-9.5671E-05	553.768414775163	30.873	1.1591	30.632	30.287	31.446	-0.24109					48	28	3	0	0	0	0.024427	1	2030	2030		34.173	13.691	1	264270	+		63038	20845	44378	44441	68276	68276					-0.025910912968583943
QLPRTNAR	8	Unmodified	_QLPRTNAR_					0	0	0			REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3060302734375	2	478.275232	954.535912	-0.32413	-0.00015502	3.6036	0.0017235	3.2795	0.0015685	478.27596716501625	23.509	0.29024	23.448	23.267	23.557	-0.060862					9	6	2	0	0	0	0.027866	1	904	904		21.96	0	1	23583	+		63039	35136	44379	44442	68277	68277					0.056825275974119904
QLPVPPSL	8	Unmodified	_QLPVPPSL_					0	0	0			REV__ENST00000441052.1_1_7:44080503-44080842:+|nuORF	REV__ENST00000441052.1_1_7:44080503-44080842:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.24609375	2	425.755278	849.496004	0.34958	0.00014884	0.84327	0.00035903	1.1929	0.00050786	425.75508331436646	87.458	0.4222	87.321	87.08	87.502	-0.13734					21	9	3	0	0	0	0.027866	1	10606	10606		37.159	1.5408	1	113920	+		63040	32538	44380	44443	68278	68278					0.06523587874130499
QLPWPHLS	8	Unmodified	_QLPWPHLS_					0	0	0			REV__ENST00000260599.10_3_2:27309825-27310158:+|nuORF	REV__ENST00000260599.10_3_2:27309825-27310158:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.263916015625	2	489.263802	976.513051	2.2187	0.0010855	-2.886	-0.001412	-0.6673	-0.00032648	489.2622809380533	18.458	1.6018	18.458	18.087	19.689	0					63	32	3	0	0	0	1.0338	1	294	294		31.955	1.4512	1	148330	+		63041	29603	44381	44444	68279	68279					0.023855084799379256
QLPYNLSF	8	Unmodified	_QLPYNLSF_					0	0	0			REV__ENST00000421745.6_1_2:32602802-32605248:+|nuORF	REV__ENST00000421745.6_1_2:32602802-32605248:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7953186035156	2	491.255643	980.496732	0.062764	3.0833E-05	-3.1772	-0.0015608	-3.1145	-0.00153	491.2528664335345	24.613	0.27585	24.691	24.501	24.777	0.078344					7	5	2	0	0	0	0.027866	1	1043	1043		19.36	0	1	18722	+		63042	32186	44382	44445	68280	68280					0.005703825231876181
QLQAEVAAL	9	Unmodified	_QLQAEVAAL_					0	0	0		ENSG00000186185|ENST00000593135|KIF18B;nc|ENSG00000186185|Q86Y91-6|KIF18B;ENST00000528416.5_1_11:65119226-65119553:+|nuORF	ENSG00000186185|ENST00000593135|KIF18B	ENSG00000186185|ENST00000593135|KIF18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2996520996094	2	471.766374	941.518196	-0.78862	-0.00037205	2.7048	0.001276	1.9162	0.00090399	471.7673099576786	38.281	0.359	38.062	37.894	38.253	-0.21848					18	10	2	0	0	0	0.023837	1	3139	3139		54.776	15.97	1	228910			63043	9524	44383	44446	68281	68281					0.04509767551883215
QLQAGWRAR	9	Unmodified	_QLQAGWRAR_					0	0	0			REV__ENST00000395246.5_1_5:130599751-130599817:+|nuORF	REV__ENST00000395246.5_1_5:130599751-130599817:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8348999023438	2	543.301781	1084.58901	-0.6684	-0.00036314	0.1347	7.3184E-05	-0.53369	-0.00028996	543.3020346694605	52.175	1.1938	52.175	51.633	52.827	0					80	31	4	0	0	0	0.024294	1	5505	5505		37.159	0	1	2885800	+		63044	31691	44384	44447	68282	68282					0.05009905380074997
QLQASEHQM	9	Unmodified	_QLQASEHQM_					0	0	0			REV__nc|ENSG00000100815|Q15643-2|TRIP11	REV__nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.247802734375	2	536.248023	1070.48149	-0.78009	-0.00041832	-1.5828	-0.00084879	-2.3629	-0.0012671	536.2470433581592	70.21	2.4621	70.222	69.831	72.293	0.012421					97	64	2	0	0	0	0.83071	1	8377	8377		37.159	4.3467	1	4146200	+		63045	21154	44385	44448	68283	68283					-0.050928523363154454
QLQCRWII	8	Unmodified	_QLQCRWII_					0	0	0			REV__ENSG00000130032|ENST00000674457|PRRG3	REV__ENSG00000130032|ENST00000674457|PRRG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.8118896484375	2	530.292037	1058.56952	-0.67338	-0.00035709	-1.3989	-0.00074182	-2.0723	-0.0010989	530.291019623493	68.35	0.72563	68.35	68.064	68.789	0					28	18	2	0	0	0	0.027866	1	8216	8216		35.201	0	1	684200	+		63046	23074	44386	44449	68284	68284					0.04257813044955583
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.7772216796875	2	589.77747	1177.54039	-1.8044	-0.0010642	1.6746	0.00098767	-0.12977	-7.6534E-05	589.7783193538529	80.872	0.83827	80.872	80.544	81.382	0					60	20	4	0	0	0	0.025498	1	10056	10056		145.16	59.294	1	1670700			63047	7891	44387	44450	68285	68285					-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.77734375	2	589.77747	1177.54039	-1.8111	-0.0010681	1.6365	0.00096517	-0.1746	-0.00010298	589.7783421992217	81.021	0.92494	80.89	80.577	81.502	-0.13075					50	22	3	0	0	0	0.025498	1	10044	10044		145.16	60.24	1	1680100			63048	7891	44387	44450	68286	68286					-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.7774047851562	2	589.77747	1177.54039	-0.34578	-0.00020393	0.18011	0.00010623	-0.16567	-9.7706E-05	589.7773835889271	80.834	0.80047	80.858	80.488	81.288	0.023911					52	19	4	0	0	0	0.041068	2	9974	9974;9986		132.76	54.494	1	1576200			63049	7891	44387	44450	68287;68288	68287					-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.77747	1177.54039	-0.33531	-0.00019776	0.53468	0.00031534	0.19937	0.00011758	589.7775999364991	80.999	0.93777	80.761	80.49	81.428	-0.23784	-0.059571	-0.00065098	NaN	145.16	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	808440			63050	7891	44387	44450							-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	589.77747	1177.54039	-0.49548	-0.00029222	0.41063	0.00024218	-0.084851	-5.0043E-05	589.7775227529891	80.976	1.1912	80.769	80.257	81.448	-0.20633	-0.050864	-0.0007973	NaN	145.16	64	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	854560			63051	7891	44387	44450							-0.04128052770352042
QLQDFDWQV	9	Unmodified	_QLQDFDWQV_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	589.77747	1177.54039	-0.83065	-0.0004899	0.9138	0.00053894	0.08315	4.904E-05	589.7778332939384	80.918	0.90422	80.772	80.492	81.396	-0.146	-0.048638	-0.00020379	NaN	145.16	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791440			63052	7891	44387	44450							-0.04128052770352042
QLQDLESI	8	Unmodified	_QLQDLESI_					0	0	0		ENSG00000185519|ENST00000375662|FAM131C;ENST00000447882.1_1_1:16361675-16363149:-|nuORF	ENSG00000185519|ENST00000375662|FAM131C	ENSG00000185519|ENST00000375662|FAM131C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7757568359375	2	473.248015	944.481476	1.276	0.00060387	-1.0772	-0.00050979	0.19878	9.4072E-05	473.24733869134354	98.454	0.5243	98.329	98.111	98.635	-0.12414					18	11	2	0	0	0	0.027866	1	12217	12217		20.947	0	1	75726			63053	9448	44388	44451	68289	68289					0.007014709353256876
QLQDLITLL	9	Unmodified	_QLQDLITLL_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3229370117188	2	528.818607	1055.62266	-0.31737	-0.00016783	1.6737	0.00088511	1.3564	0.00071727	528.8191090467154	69.98	1.3609	69.98	69.383	70.744	0					94	36	4	0	0	0	0.91321	1	8507	8507		31.53	1.2121	1	15950000	+		63054	27924	44389	44452	68290	68290					0.09707469308614236
QLQDSWVLG	9	Unmodified	_QLQDSWVLG_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2924194335938	2	523.269281	1044.52401	-0.24389	-0.00012762	2.1675	0.0011342	1.9236	0.0010066	523.2702851353737	19.213	0.44484	19.095	18.854	19.299	-0.11872					17	8	3	0	0	0	0.024487	1	385	385		17.365	0.89182	1	62831			63055	10601	44390	44453	68291	68291					0.003528660635538472
QLQEGKHVI	9	Unmodified	_QLQEGKHVI_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2979125976562	2	526.298373	1050.58219	-0.26402	-0.00013896	-0.067712	-3.5637E-05	-0.33174	-0.00017459	526.2983237200192	54.864	1.1961	54.962	54.66	55.856	0.098015					79	32	4	0	0	0	0.15029	2	5953	5940;5953		99.375	7.185	1	8576000			63056	6106	44391	44454	68292;68293	68293					0.058925477088678235
QLQEIAAAR	9	Unmodified	_QLQEIAAAR_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.80584716796875	2	500.282723	998.550893	0.3986	0.00019941	-0.54031	-0.00027031	-0.14171	-7.0897E-05	500.2822384310331	42.24	0.6884	42.24	41.954	42.642	0					42	19	3	0	0	0	0.022083	1	3867	3867		24.519	0	1	1466200			63057	8848	44392	44455	68294	68294					0.05155974674732988
QLQELREKL	9	Unmodified	_QLQELREKL_					0	0	0		ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.8375244140625	2	578.837862	1155.66117	-1.6166	-0.00093575	0.40172	0.00023253	-1.2149	-0.00070322	578.8384221503417	38.6	0.76699	38.628	38.23	38.997	0.027275					62	20	4	0	0	0	0.077175	1	3203	3203		118.74	5.3315	1	2629300			63058	10248	44393	44456	68295	68295					0.08956774943112578
QLQEPLEKM	9	Unmodified	_QLQEPLEKM_					0	0	0			REV__ENST00000590485.1_1_19:5641888-5648065:+|nuORF	REV__ENST00000590485.1_1_19:5641888-5648065:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.2932739257812	2	558.291899	1114.56925	-0.71636	-0.00039994	3.4433	0.0019224	2.727	0.0015225	558.2937791582706	26.448	0.92717	26.425	26.164	27.091	-0.023088					64	22	5	0	0	0	0.45795	1	1355	1355		62.107	8.756	1	3310300	+		63059	25331	44394	44457	68296	68296					0.01654348534430028
QLQGLDQFAM	10	Unmodified	_QLQGLDQFAM_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8434448242188	2	575.781699	1149.54884	-0.24858	-0.00014313	-2.4679	-0.001421	-2.7165	-0.0015641	575.7801193816789	88.082	0.50661	87.911	87.625	88.131	-0.17054					21	12	2	0	0	0	0.03519	1	10739	10739		24.519	3.5723	1	269030			63060	6021	44395	44458	68297	68297					-0.019948221253798692
QLQHKEKKLSA	11	Unmodified	_QLQHKEKKLSA_					0	0	0		ENSG00000172421|ENST00000305286|EFCAB3;nc|ENSG00000172421|Q8N7B9-2|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	ENSG00000172421|ENST00000305286|EFCAB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2571105957031	3	437.257738	1308.75138	1.0571	0.00046224	-1.8864	-0.00082483	-0.82923	-0.00036259	437.25688759784646	97.353	2.9903	97.23	96.187	99.177	-0.12368					226	70	5	0	0	0	1.0379	1	12074	12074		28.384	0.30229	1	1091400			63061	8274	44396	44459	68298	68298					0.10935824271564343
QLQKFIQY	8	Unmodified	_QLQKFIQY_					0	0	0		PIK3R3-ZSWIM5|1|fusion;ENSG00000162415|ENST00000359600|ZSWIM5;ZSWIM5|p.R1079Lfs*7|1|0.07|ENSG00000162415|chr1:45018776-45018777|-/AAACA|frameshift_variant	PIK3R3-ZSWIM5|1|fusion	PIK3R3-ZSWIM5|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7738647460938	2	534.297842	1066.58113	-0.47042	-0.00025135	-0.25803	-0.00013787	-0.72846	-0.00038921	534.2975126336839	47.386	0.63572	47.192	46.814	47.45	-0.19387					45	16	4	0	0	0	0.027866	1	4665	4665		33.516	5.6333	1	1242900			63062	6941	44397	44460	68299	68299					0.050503333399547046
QLQLEKAW	8	Unmodified	_QLQLEKAW_					0	0	0			REV__CHD3|p.E571Q|1|0.2|ENSG00000170004|chr17:7897086-7897086|G/C|missense_variant	REV__CHD3|p.E571Q|1|0.2|ENSG00000170004|chr17:7897086-7897086|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2774658203125	2	508.282192	1014.54983	-0.54516	-0.00027709	1.1418	0.00058038	0.59668	0.00030328	508.2813034049193	34.335	0.34699	34.335	34.168	34.515	0					14	8	2	0	0	0	0.027866	1	2545	2545		60.972	18.497	1	86356	+		63063	19305	44398	44461	68300	68300					0.04313760305831238
QLQLKQNL	8	Unmodified	_QLQLKQNL_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2432861328125	2	492.795466	983.57638	-0.14842	-7.3139E-05	-0.38514	-0.00018979	-0.53355	-0.00026293	492.79503704915794	37.498	0.29992	37.531	37.339	37.639	0.032269					11	7	2	0	0	0	0.027866	1	3024	3024		38.806	1.647	1	56739	+		63064	19855	44399	44462	68301	68301					0.08393449197160407
QLQPHIAPL	9	Unmodified	_QLQPHIAPL_					0	0	0			REV__ENST00000315215.11_1_8:37654893-37655034:+|nuORF	REV__ENST00000315215.11_1_8:37654893-37655034:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2695007324219	2	508.798009	1015.58147	-0.87392	-0.00044465	-2.2174	-0.0011282	-3.0914	-0.0015729	508.79703591151923	44.5	0.53298	44.396	44.134	44.667	-0.10468					21	13	3	0	0	0	0.024354	1	4189	4189		30.504	0	1	224990	+		63065	30258	44400	44463	68302	68302					0.07429753059784616
QLQQHDFSSQ	10	Unmodified	_QLQQHDFSSQ_					0	0	0		nc|ENSG00000065717|Q04725-3|TLE2;nc|ENSG00000065717|Q04725-2|TLE2;ENSG00000065717|ENST00000262953|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	nc|ENSG00000065717|Q04725-3|TLE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5873107910156	3	406.523031	1216.54726	-0.13106	-5.328E-05	1.9006	0.00077263	1.7695	0.00071935	406.5246162853159	25.32	0.39564	25.093	24.752	25.148	-0.22683					12	8	2	0	0	0	0.03519	1	1198	1198		51.528	18.777	1	50801			63066	18064	44401	44464	68303	68303					-0.05234739889760931
QLQQHLGTH	9	Unmodified	_QLQQHLGTH_					0	0	0			REV__ENSG00000177047|ENST00000380229|IFNW1	REV__ENSG00000177047|ENST00000380229|IFNW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2254638671875	2	531.277972	1060.54139	-1.1624	-0.00061758	1.1346	0.00060278	-0.02786	-1.4802E-05	531.2784350841661	27.474	0.42732	27.306	27.142	27.57	-0.16816					11	9	2	0	0	0	0.024381	1	1533	1533		37.159	16.212	1	30358	+		63067	27077	44402	44465	68304	68304					0.013542063892373335
QLQQKKQL	8	Unmodified	_QLQQKKQL_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.3038024902344	2	507.308741	1012.60293	-0.082507	-4.1856E-05	0.086715	4.3991E-05	0.0042082	2.1348E-06	507.3088009710188	41.465	1.2094	41.342	41.016	42.225	-0.12318					70	34	3	0	0	0	0.78609	1	3731	3731		60.294	0	1	6348400	+		63068	23667	44403	44466	68305	68305					0.0971313808852301
QLQQKLKQA	9	Unmodified	_QLQQKLKQA_					0	0	0		DNHD1|p.E504Q|1|0.1|ENSG00000179532|chr11:6519717-6519717|G/C|missense_variant	DNHD1|p.E504Q|1|0.1|ENSG00000179532|chr11:6519717-6519717|G/C|missense_variant	DNHD1|p.E504Q|1|0.1|ENSG00000179532|chr11:6519717-6519717|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.306396484375	2	542.827298	1083.64004	-1.4537	-0.00078912	1.219	0.00066172	-0.2347	-0.0001274	542.8279459264243	36.335	0.49655	36.292	36.032	36.529	-0.042458					24	13	3	0	0	0	0.024354	1	2873	2873		38.806	0	1	208460			63069	660	44404	44467	68306	68306					0.10156809634258934
QLQQLAQVQ	9	Unmodified	_QLQQLAQVQ_					0	0	0			REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.274658203125	2	528.29583	1054.57711	-0.06463	-3.4144E-05	0.82332	0.00043496	0.75869	0.00040081	528.2963480849218	46.612	0.49291	46.663	46.342	46.834	0.051395					31	13	3	0	0	0	0.024294	1	4507	4507		45.952	16.802	1	550980	+		63070	22707	44405	44468	68307	68307					0.052002438462295686
QLQQPGIRH	9	Unmodified	_QLQQPGIRH_					0	0	0		ENST00000271375.6_1_1:168213838-168214108:+|nuORF	ENST00000271375.6_1_1:168213838-168214108:+|nuORF	ENST00000271375.6_1_1:168213838-168214108:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7924194335938	2	538.801614	1075.58868	-0.69925	-0.00037676	-3.6583	-0.0019711	-4.3576	-0.0023479	538.8006315550032	78.99	0.20957	79.008	78.86	79.07	0.018677					5	4	2	0	0	0	0.024457	1	9696	9696		37.159	1.5408	1	43079			63071	11645	44406	44469	68308	68308					0.05390485660223021
QLQQQNVEP	9	Unmodified	_QLQQQNVEP_					0	0	0			REV__HUWE1|p.Q1316E|1|0.25|ENSG00000086758|chrX:53592424-53592424|G/C|missense_variant	REV__HUWE1|p.Q1316E|1|0.25|ENSG00000086758|chrX:53592424-53592424|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.322265625	2	542.275095	1082.53564	-2.4794	-0.0013445	-0.71207	-0.00038614	-3.1915	-0.0017307	542.2745779079206	60.172	0.33775	60.25	60.127	60.465	0.078888					12	8	2	0	0	0	0.024381	1	6824	6824		29.15	10.887	1	133240	+		63072	36138	44407	44470	68309	68309					-0.0023293691308481357
QLQREQLL	8	Unmodified	_QLQREQLL_					0	0	0			REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7960205078125	2	514.298373	1026.58219	-0.3118	-0.00016036	-0.026511	-1.3634E-05	-0.33831	-0.00017399	514.2981961513966	23.483	1.1192	23.303	22.883	24.002	-0.17989					42	25	3	0	0	0	0.027866	1	967	967		68.485	2.6815	1	594310	+		63073	36895;36190	44408	44471	68310	68310					0.0699654770885445
QLQRLRIV	8	Unmodified	_QLQRLRIV_					0	0	0			REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3087158203125	2	513.33255	1024.65055	-0.21717	-0.00011148	-0.45787	-0.00023504	-0.67504	-0.00034652	513.332141711661	46.22	0.56218	46.22	45.953	46.515	0					31	15	3	0	0	0	0.027866	1	4552	4552		13.775	0	1	758560	+		63074	37033	44409	44472	68311	68311					0.1392083707933125
QLQRMEPK	8	Unmodified	_QLQRMEPK_					0	0	0		ENST00000484975.5_1_20:44472824-44477348:-|nuORF;ENST00000493118.5_1_20:44472824-44485929:-|nuORF;ENST00000484783.1_1_20:44472824-44485954:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484975.5_1_20:44472824-44477348:-|nuORF	ENST00000484975.5_1_20:44472824-44477348:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2723388671875	2	515.279126	1028.5437	-1.2513	-0.00064477	1.0384	0.00053505	-0.21293	-0.00010972	515.2793000860729	39.928	0.43478	39.951	39.84	40.275	0.02319					17	11	2	0	0	0	0.027866	1	3397	3397		38.806	3.6054	1	481800			63075	2332	44410	44473	68312	68312					0.03056918802690234
QLQSKSPFSKG	11	Unmodified	_QLQSKSPFSKG_					0	0	0			REV__ENSG00000197779|ENST00000338637|ZNF81	REV__ENSG00000197779|ENST00000338637|ZNF81	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.57073974609375	3	402.887422	1205.64044	2.0217	0.00081451	-0.48921	-0.00019709	1.5325	0.00061742	402.88719634905715	20.038	0.24437	19.838	19.653	19.897	-0.2001					7	4	2	0	0	0	0.024754	1	480	480		40.015	24.095	1	34843	+		63076	28347	44411	44474	68313	68313					0.04584184563464078
QLQSLKLPI	9	Unmodified	_QLQSLKLPI_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.273681640625	2	520.329142	1038.64373	-1.7112	-0.00089037	-0.057439	-2.9887E-05	-1.7686	-0.00092025	520.3290697893758	38.096	0.31485	38.096	37.969	38.284	0					14	9	2	0	0	0	0.024539	1	3183	3183		20.947	4.4738	1	161730	+		63077	20141	44412	44475	68314	68314					0.12595479408128085
QLQSRQQL	8	Unmodified	_QLQSRQQL_					0	0	0		nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7773132324219	2	500.780348	999.546142	0.45163	0.00022617	-4.396	-0.0022014	-3.9443	-0.0019752	501.2793661088515	71.979	0.66077	71.989	71.433	72.094	0.0097733					30	17	2	0	0	0	0.027866	1	8627	8627		38.806	0	1	598280			63078	10368	44413	44476	68315	68315					0.046350905319854974
QLQTQPQPQ	9	Unmodified	_QLQTQPQPQ_					0	0	0			REV__nc|ENSG00000198911|Q12772-2|SREBF2	REV__nc|ENSG00000198911|Q12772-2|SREBF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3311157226562	2	534.277638	1066.54072	-1.4916	-0.0007969	0.846	0.000452	-0.64555	-0.0003449	534.2778673037626	44.137	0.64445	43.992	43.814	44.459	-0.14471					32	18	3	0	0	0	0.024319	1	4208	4208		47.657	6.8792	1	615440	+		63079	28515	44414	44477	68316	68316					0.010113669495240174
QLQVQKTF	8	Unmodified	_QLQVQKTF_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.2838439941406	2	496.282192	990.549831	0.84787	0.00042078	1.584	0.0007861	2.4318	0.0012069	496.2824983619148	20.408	1.5137	20.212	19.805	21.319	-0.19577					52	30	3	0	0	0	0.94517	2	545	533;545		45.952	5.1738	1	355630			63080	6240	44415	44478	68317;68318	68318					0.05417760305851971
QLQWNLTQMTQ	11	Unmodified	_QLQWNLTQMTQ_					0	0	0		RLF-SMAP2|1|fusion;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2;nc|ENSG00000084070|Q8WU79-3|SMAP2	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.73138427734375	3	464.230971	1389.67108	-0.48936	-0.00022718	3.3563	0.0015581	2.8669	0.0013309	464.2324683877073	40.096	0.77612	39.984	39.467	40.243	-0.11223					42	20	3	0	0	0	0.024834	1	3509	3509		8.7993	0	1	312480			63081	37837	44416	44479	68319	68319					-0.008164051138237483
QLRCERAR	8	Carbamidomethyl (C)	_QLRC(Carbamidomethyl (C))ERAR_	QLRC(1)ERAR		QLRC(56)ERAR		0	1	0			REV__ENST00000463734.1_1_20:25204516-25206230:+|nuORF	REV__ENST00000463734.1_1_20:25204516-25206230:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8348999023438	2	544.790724	1087.56689	-0.42537	-0.00023174	1.811	0.00098661	1.3856	0.00075488	544.7916545213918	51.609	0.65316	51.609	51.359	52.012	0					49	18	4	0	0	0	0.027866	1	5505	5505		55.504	11.387	1	579180	+		63082	32944	44417	44480	68320	68320	436				0.02661357639999551
QLRDILSQL	9	Unmodified	_QLRDILSQL_					0	0	0		CON__REFSEQ:XP_001252647	CON__REFSEQ:XP_001252647	CON__REFSEQ:XP_001252647	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3189086914062	2	543.319306	1084.62406	0.1951	0.000106	-0.91399	-0.00049659	-0.71889	-0.00039059	543.3187980096594	58.982	0.7278	58.982	58.606	59.333	0					64	19	4	0	0	0	0.12914	1	6704	6704		104.06	2.5969	1	10842000		+	63083	576	44418	44481	68321	68321					0.08513103397376653
QLRDILSQL	9	Unmodified	_QLRDILSQL_					0	0	0		CON__REFSEQ:XP_001252647	CON__REFSEQ:XP_001252647	CON__REFSEQ:XP_001252647	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3186645507812	2	543.319306	1084.62406	-0.31182	-0.00016942	-0.29034	-0.00015775	-0.60216	-0.00032716	543.319121283943	58.816	0.68447	58.902	58.593	59.277	0.085682					69	18	5	0	0	0	0.086035	1	6615	6615		115.49	8.811	1	9624500		+	63084	576	44418	44481	68322	68322					0.08513103397376653
QLRDQKGLL	9	Unmodified	_QLRDQKGLL_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7674560546875	2	535.819473	1069.62439	0.72048	0.00038605	-0.93921	-0.00050325	-0.21873	-0.0001172	535.8188742704713	37.172	0.72938	37.172	36.685	37.414	0					47	18	3	0	0	0	0.024367	1	3039	3039		52.937	1.744	1	748440	+		63085	25624	44419	44482	68323	68323					0.09236523117237994
QLRDQKGLL	9	Unmodified	_QLRDQKGLL_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7683715820312	2	535.819473	1069.62439	-0.68958	-0.00036949	0.44317	0.00023746	-0.24641	-0.00013203	535.8195533611429	37.129	0.80889	37.161	36.716	37.525	0.032269					50	20	3	0	0	0	0.024288	1	2921	2921		52.937	15.778	1	571060	+		63086	25624	44419	44482	68324	68324					0.09236523117237994
QLRDYCAHHLI	11	Unmodified	_QLRDYCAHHLI_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7663879394531	3	456.899556	1367.67684	-0.35006	-0.00015994	-1.1957	-0.0005463	-1.5457	-0.00070624	456.8997190810827	23.044	0.26958	23.119	22.886	23.155	0.075394					6	5	2	0	0	0	0.024727	1	814	814		17.833	0.6664	1	37937			63087	2082	44420	44483	68325	68325					0.007707381885211362
QLREEQEP	8	Unmodified	_QLREEQEP_					0	0	0			REV__ENSG00000261739|ENST00000562295|GOLGA8S	REV__ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.275390625	2	514.753995	1027.49344	-0.41808	-0.00021521	-1.337	-0.00068824	-1.7551	-0.00090345	514.7519068393572	68.484	0.38473	68.484	68.332	68.717	0					11	9	2	0	0	0	0.027866	1	8213	8213		56.721	12.344	1	49644	+		63088	29117	44421	44484	68326	68326					-0.019209123214750434
QLRELESKI	9	Unmodified	_QLRELESKI_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.32470703125	2	558.324588	1114.63462	-0.74544	-0.0004162	0.26986	0.00015067	-0.47558	-0.00026553	558.3246230735812	38.57	1.0388	38.57	38.284	39.323	0					70	27	4	0	0	0	0.025498	3	3239	3239;3247;3261		145.16	0	1	3497800			63089	2158	44422	44485	68327;68328;68329	68327					0.081890860518115
QLRELESKI	9	Unmodified	_QLRELESKI_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.3244018554688	2	558.324588	1114.63462	-0.8167	-0.00045599	0.24166	0.00013492	-0.57505	-0.00032106	558.3246700010856	38.514	1.2045	38.432	38.116	39.32	-0.082512					79	32	4	0	0	0	0.015752	3	3238	3215;3226;3238		158.07	0	1	3049400			63090	2158	44422	44485	68330;68331;68332	68332					0.081890860518115
QLRELESKI	9	Unmodified	_QLRELESKI_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3240966796875	2	558.324588	1114.63462	-1.1306	-0.00063123	0.43848	0.00024481	-0.69211	-0.00038642	558.3247559952039	38.792	1.136	38.819	38.429	39.565	0.027275					83	30	5	0	0	0	0.016542	1	3215	3215		154.12	0	1	3241500			63091	2158	44422	44485	68333	68333					0.081890860518115
QLRELESKI	9	Unmodified	_QLRELESKI_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.324588	1114.63462	-1.0845	-0.0006055	0.44181	0.00024667	-0.6427	-0.00035883	558.3248426797745	38.42	0.7105	38.24	38.002	38.713	-0.17929	-0.18573	0.00017592	NaN	158.07	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302210			63092	2158	44422	44485							0.081890860518115
QLRELESKI	9	Unmodified	_QLRELESKI_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.324588	1114.63462	-0.73619	-0.00041103	-0.29685	-0.00016574	-1.033	-0.00057677	558.3248219441163	38.463	0.73511	38.242	38.021	38.757	-0.22148	-0.18406	-0.00064889	NaN	158.07	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308250			63093	2158	44422	44485							0.081890860518115
QLRELESKI	9	Unmodified	_QLRELESKI_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.324588	1114.63462	-0.45885	-0.00025619	-0.16082	-8.9792E-05	-0.61967	-0.00034598	558.3244771723175	38.471	0.72914	38.253	38.049	38.778	-0.21848	-0.173	-0.000497	NaN	158.07	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366130			63094	2158	44422	44485							0.081890860518115
QLRENEATL	9	Unmodified	_QLRENEATL_					0	0	0			REV__ENSG00000172216|ENST00000303004|CEBPB	REV__ENSG00000172216|ENST00000303004|CEBPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2957153320312	2	537.28292	1072.55129	-1.5595	-0.0008379	-0.18094	-9.7215E-05	-1.7405	-0.00093512	537.2827830634601	37.829	0.38459	37.861	37.677	38.062	0.032269					24	10	3	0	0	0	0.024477	1	3084	3084		44.117	12.162	1	347670	+		63095	26647	44423	44486	68334	68334					0.017913496039454913
QLREPTPAW	9	Unmodified	_QLREPTPAW_					0	0	0			REV__ENSG00000100982|ENST00000372409|PCIF1	REV__ENSG00000100982|ENST00000372409|PCIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8445434570312	2	549.290548	1096.56654	-0.26032	-0.00014299	-0.48886	-0.00026853	-0.74918	-0.00041152	549.2901671731987	45.619	0.93016	45.522	45.257	46.187	-0.096653					52	25	3	0	0	0	0.024381	1	4340	4340		55.504	19.057	1	2809800	+		63096	21169	44424	44487	68335	68335					0.02212261191766629
QLRFPDTP	8	Unmodified	_QLRFPDTP_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.785400390625	2	487.258717	972.50288	-1.1766	-0.00057332	2.4241	0.0011812	1.2475	0.00060786	487.25958505721513	44.633	0.99088	44.484	44.19	45.181	-0.1488					54	28	3	0	0	0	0.027866	1	4258	4258		44.117	1.7207	1	944840	+		63097	23137	44425	44488	68336	68336					0.015529007547002038
QLRFPDTP	8	Unmodified	_QLRFPDTP_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.258717	972.50288	-0.94537	-0.00046064	1.7817	0.00086816	0.83636	0.00040752	487.25943130374185	44.532	0.93093	44.532	44.183	45.114	0	0.017712	-0.00028291	NaN	35.618	51	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	938340	+		63098	23137	44425	44488							0.015529007547002038
QLRGKASGKL	10	Unmodified	_QLRGKASGKL_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.8200073242188	2	529.327465	1056.64038	0.032581	1.7246E-05	-0.83962	-0.00044444	-0.80704	-0.00042719	529.3271126379678	19.645	0.63422	19.484	19.282	19.916	-0.16079					18	12	3	0	0	0	1.0271	1	456	456		42.396	0	1	626370			63099	8463	44426	44489	68337	68337					0.11432229354113588
QLRHNPHHH	9	Unmodified	_QLRHNPHHH_					0	0	0			REV__ENST00000467281.5_1_7:127228552-127229563:+|nuORF	REV__ENST00000467281.5_1_7:127228552-127229563:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.3196411132812	2	588.300104	1174.58566	-1.1002	-0.00064722	-0.26071	-0.00015338	-1.3609	-0.0008006	588.2999435161461	21.973	0.621	21.782	21.516	22.137	-0.19072					25	12	3	0	0	0	0.024541	1	703	703		18.324	0.95945	1	136630	+		63100	33069	44427	44490	68338	68338					0.005346553260778819
QLRHNPHHH	9	Unmodified	_QLRHNPHHH_					0	0	0			REV__ENST00000467281.5_1_7:127228552-127229563:+|nuORF	REV__ENST00000467281.5_1_7:127228552-127229563:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	588.300104	1174.58566	-0.01265	-7.4422E-06	-1.2261	-0.00072133	-1.2388	-0.00072877	588.2993859078591	21.773	0.52515	21.596	21.35	21.875	-0.17721	-0.079001	-0.00048239	NaN	18.324	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134750	+		63101	33069	44427	44490							0.005346553260778819
QLRIGLASF	9	Unmodified	_QLRIGLASF_					0	0	0			REV__ENSG00000019485|ENST00000683152|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2801208496094	2	502.798009	1003.58147	-0.28936	-0.00014549	2.4407	0.0012272	2.1513	0.0010817	502.7991655798203	34.436	0.54323	34.432	34.225	34.769	-0.0045624					19	13	2	0	0	0	0.024457	1	2561	2561		29.15	10.825	1	94925	+		63102	19987	44428	44491	68339	68339					0.07981753059789298
QLRILYFPCL	10	Unmodified	_QLRILYFPCL_					0	0	0			REV__ENSG00000135845|ENST00000344529|PIGC	REV__ENSG00000135845|ENST00000344529|PIGC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.8463134765625	3	422.57401	1264.7002	-0.421	-0.0001779	3.2863	0.0013887	2.8653	0.0012108	422.57534411789396	33.143	0.91772	32.977	32.638	33.555	-0.16565					67	22	4	0	0	0	0.03519	1	2304	2304		36.447	14.761	1	1693900	+		63103	23587	44429	44492	68340	68340					0.0784378397315777
QLRKLLQP	8	Unmodified	_QLRKLLQP_					0	0	0		ENST00000267425.7_1_14:24769093-24769264:+|nuORF	ENST00000267425.7_1_14:24769093-24769264:+|nuORF	ENST00000267425.7_1_14:24769093-24769264:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3213806152344	2	498.321651	994.62875	-0.063881	-3.1834E-05	-0.1714	-8.5414E-05	-0.23529	-0.00011725	498.3213926274204	48.751	1.524	48.751	47.875	49.399	0					118	43	4	0	0	0	0.59392	1	4985	4985		76.847	2.8719	1	2763900			63104	11619	44430	44493	68341	68341					0.13122032330807087
QLRKVDAE	8	Unmodified	_QLRKVDAE_					0	0	0			REV__AFAP1|p.A648V|1|0.11|ENSG00000196526|chr4:7772878-7772878|G/A|missense_variant	REV__AFAP1|p.A648V|1|0.11|ENSG00000196526|chr4:7772878-7772878|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7311706542969	2	479.769448	957.524344	-0.21505	-0.00010318	-0.61279	-0.000294	-0.82784	-0.00039717	479.7688820475994	32.173	0.79291	32.185	31.583	32.376	0.011799					26	19	2	0	0	0	0.027866	1	2153	2153		60.972	0	1	285850	+		63105	19081	44431	44494	68342	68342					0.043882857834205424
QLRLREAED	9	Unmodified	_QLRLREAED_					0	0	0			REV__ENSG00000171056|ENST00000304501|SOX7	REV__ENSG00000171056|ENST00000304501|SOX7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.831787109375	2	565.301644	1128.58874	-0.44531	-0.00025174	-1.3142	-0.00074292	-1.7595	-0.00099466	565.803866405116	53.883	0.18338	53.686	53.556	53.74	-0.19739					10	5	3	0	0	0	0.024541	1	5651	5651		24.203	0	1	186080	+		63106	26538	44432	44495	68343	68343					0.029584408695427555
QLRNEAEAF	9	Unmodified	_QLRNEAEAF_					0	0	0			REV__ENSG00000180660|ENST00000379919|MAB21L1	REV__ENSG00000180660|ENST00000379919|MAB21L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.8016357421875	2	539.269813	1076.52507	-0.45302	-0.0002443	3.4597	0.0018657	3.0066	0.0016214	539.2716647257749	17.732	0.94446	17.525	17.315	18.259	-0.20669					22	18	2	0	0	0	0.024354	1	279	279		47.916	1.9636	1	32311	+		63107	27355	44433	44496	68344	68344					-0.010129195675517622
QLRPLQFLL	9	Unmodified	_QLRPLQFLL_					0	0	0			REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF	REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.3240356445312	2	564.350409	1126.68626	-0.88322	-0.00049845	0.79235	0.00044716	-0.09087	-5.1283E-05	564.350942196516	62.26	0.17428	62.033	61.909	62.084	-0.22663					5	4	2	0	0	0	0.024535	1	7200	7200		18.324	0	1	140140	+		63108	34043	44434	44497	68345	68345					0.12798874536360927
QLRPRQAGL	9	Unmodified	_QLRPRQAGL_					0	0	0		ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7422485351562	2	519.811982	1037.60941	-0.81147	-0.00042181	1.3823	0.00071856	0.57088	0.00029675	519.8121476241521	43.814	0.34509	43.71	43.544	43.889	-0.10468					14	8	2	0	0	0	0.024487	1	4039	4039		31.955	11.473	1	106660			63109	4790	44435	44498	68346	68346					0.09211076039900945
QLRQLDLIE	9	Unmodified	_QLRQLDLIE_					0	0	0			REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8449096679688	2	564.324588	1126.63462	-0.39112	-0.00022072	-1.171	-0.00066082	-1.5621	-0.00088154	564.3235192336342	66.244	0.46127	65.962	65.711	66.173	-0.28148					21	11	3	0	0	0	0.023635	1	7843	7843		76.774	28.815	1	253390	+		63110	19357	44436	44499	68347	68347					0.0763708605179545
QLRQNMLNVV	10	Unmodified	_QLRQNMLNVV_					0	0	0			REV__ENSG00000115977|ENST00000409085|AAK1	REV__ENSG00000115977|ENST00000409085|AAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	607.7882080078125	2	607.837339	1213.66013	-0.41085	-0.00024973	-1.423	-0.00086494	-1.8338	-0.0011147	607.8359604711355	53.612	0.25787	53.367	53.163	53.421	-0.2453					8	6	2	0	0	0	0.03519	1	5595	5595		27.882	4.3595	1	149580	+		63111	22246	44437	44500	68348	68348					0.06184237302568363
QLRRFLAG	8	Unmodified	_QLRRFLAG_					0	0	0			REV__ENSG00000174567|ENST00000308302|GOLT1A	REV__ENSG00000174567|ENST00000308302|GOLT1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.76898193359375	2	480.790518	959.566484	-1.0348	-0.00049752	-0.87446	-0.00042043	-1.9093	-0.00091795	480.7900781218836	44.318	0.53233	44.073	43.867	44.4	-0.2444					23	14	2	0	0	0	0.027866	1	4145	4145		35.201	0	1	248890	+		63112	26876	44438	44501	68349	68349					0.08508305982456932
QLRRFPDWW	9	Unmodified	_QLRRFPDWW_					0	0	0			REV__ENST00000467878.1_1_2:112638179-112638251:-|nuORF	REV__ENST00000467878.1_1_2:112638179-112638251:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7718505859375	3	435.228001	1302.66217	-0.44289	-0.00019276	4.0659	0.0017696	3.623	0.0015768	435.22969511536417	25.344	0.52091	25.344	25.173	25.694	0					17	12	3	0	0	0	0.024447	1	1211	1211		25.574	0	1	125210	+		63113	30627	44439	44502	68350	68350					0.02295034102689897
QLRRGLGL	8	Unmodified	_QLRRGLGL_					0	0	0			REV__ENST00000465425.1_1_19:36497111-36499583:-|nuORF	REV__ENST00000465425.1_1_19:36497111-36499583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2582702636719	2	456.790518	911.566484	0.064543	2.9483E-05	-0.58202	-0.00026586	-0.51748	-0.00023638	456.79006309014284	32.079	0.43438	32.079	31.789	32.224	0					16	10	2	0	0	0	0.027866	1	2202	2202		33.516	8.0654	1	104330	+		63114	27401	44440	44503	68351	68351					0.10716305982452923
QLRRPHPQ	8	Unmodified	_QLRRPHPQ_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.7735595703125	2	516.296499	1030.57845	-0.93484	-0.00048266	-2.7913	-0.0014412	-3.7262	-0.0019238	516.2972357645789	25.088	0.25421	25.088	24.919	25.173	0					8	5	2	0	0	0	0.027866	1	1139	1139		30.504	0	1	43594			63115	12308	44441	44504	68352	68352					0.06437922725649514
QLRSGPGPI	9	Unmodified	_QLRSGPGPI_					0	0	0		ENST00000531894.5_1_16:70020395-70030097:-|nuORF	ENST00000531894.5_1_16:70020395-70030097:-|nuORF	ENST00000531894.5_1_16:70020395-70030097:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2875061035156	2	462.766709	923.518865	0.34758	0.00016085	3.8793	0.0017952	4.2269	0.0019561	462.76831874155357	53.048	0.43272	53.143	52.868	53.3	0.095669					17	11	2	0	0	0	0.024412	1	5602	5602		50.025	22.142	1	304880			63116	16272	44442	44505	68353	68353					0.054046069916125816
QLRSIDQIL	9	Unmodified	_QLRSIDQIL_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3202514648438	2	543.319306	1084.62406	-0.6523	-0.00035441	0.1179	6.4055E-05	-0.53441	-0.00029035	543.3193466176134	64.421	1.3172	64.466	64.046	65.363	0.045502					61	35	2	0	0	0	0.096521	1	7512	7512		111.65	0	1	13395000	+		63117	21525	44443	44506	68354	68354					0.08513103397376653
QLRSIEKR	8	Unmodified	_QLRSIEKR_					0	0	0		ENSG00000110104|ENST00000227520|CCDC86;nc|ENSG00000110104|Q9H6F5-2|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7980346679688	2	515.311815	1028.60908	-0.94695	-0.00048798	-0.74679	-0.00038483	-1.6937	-0.00087281	515.3114377201662	35.35	0.29568	35.35	35.235	35.531	0					10	7	2	0	0	0	0.027866	1	2727	2727		21.96	11.695	1	163260			63118	3024	44444	44507	68355	68355					0.09591656320026232
QLRSKAEQCG	10	Unmodified	_QLRSKAEQCG_					0	0	0		MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2702026367188	2	560.282397	1118.55024	-0.29771	-0.0001668	-3.047	-0.0017072	-3.3447	-0.001874	560.2806173188042	26.691	0.70963	26.523	26.262	26.971	-0.16816					23	16	2	0	0	0	0.03519	1	1377	1377		67.494	25.098	1	204930			63119	17961	44445	44508	68356	68356					-0.004291880366054102
QLRSKAEQCG	10	Unmodified	_QLRSKAEQCG_					0	0	0		MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	560.282397	1118.55024	-0.24286	-0.00013607	-10.198	-0.0057138	-10.441	-0.0058499	560.2765971476597	26.633	0.74754	26.633	26.203	26.951	0	0.099973	-0.0034807	NaN	67.494	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336030			63120	17961	44445	44508							-0.004291880366054102
QLRSKAEQCG	10	Unmodified	_QLRSKAEQCG_					0	0	0		MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	560.282397	1118.55024	-0.7096	-0.00039758	-9.6916	-0.00543	-10.401	-0.0058276	560.2767765499401	26.608	0.61553	26.585	26.243	26.859	-0.023088	0.051996	-0.0029131	NaN	67.494	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401810			63121	17961	44445	44508							-0.004291880366054102
QLRSKAEQCG	10	Unmodified	_QLRSKAEQCG_					0	0	0		MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MED24|p.Q214K|1|0.77|ENSG00000008838|chr17:40033376-40033376|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.282397	1118.55024	-0.20691	-0.00011593	-10.115	-0.005667	-10.321	-0.0057829	560.2763013641356	26.231	1.0906	26.312	25.624	26.714	0.081291	-0.22093	-0.003387	NaN	67.494	42	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383710			63122	17961	44445	44508							-0.004291880366054102
QLRSLVGP	8	Unmodified	_QLRSLVGP_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant;ENST00000587569.5_1_17:74014525-74023279:-|nuORF	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7803955078125	2	435.263802	868.513051	-0.62659	-0.00027273	0.95507	0.00041571	0.32848	0.00014297	435.2640975422409	40.381	0.55899	40.151	39.891	40.45	-0.2302					20	14	2	0	0	0	0.027866	1	3478	3478		30.504	0	1	207050			63123	7746	44446	44509	68357	68357					0.07353508479945958
QLRTPPHLT	9	Unmodified	_QLRTPPHLT_					0	0	0			REV__ENST00000304733.7_1_16:90072395-90072686:-|nuORF	REV__ENST00000304733.7_1_16:90072395-90072686:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8056640625	2	531.806365	1061.59818	0.77708	0.00041325	-1.1167	-0.00059388	-0.33965	-0.00018063	531.8056769437933	20.485	1.8067	20.554	20.021	21.827	0.068901					52	17	4	0	0	0	0.42604	1	494	494		64.207	9.431	1	763580	+		63124	30105	44447	44510	68358	68358					0.06984253945756791
QLRVLSAI	8	Unmodified	_QLRVLSAI_					0	0	0		ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6	ENSG00000124587|ENST00000304611|PEX6	ENSG00000124587|ENST00000304611|PEX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2686767578125	2	450.287277	898.560001	-1.5749	-0.00070917	-2.6496	-0.0011931	-4.2246	-0.0019023	450.2861536862442	38.189	0.20271	38.216	38.162	38.365	0.027279					9	5	3	0	0	0	0.027866	1	3136	3136		38.806	0	1	658190			63125	4061	44448	44511	68359	68359					0.10666368031081674
QLRVQLGHQV	10	Unmodified	_QLRVQLGHQV_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3433227539062	2	589.343646	1176.67274	-0.57069	-0.00033633	-0.8775	-0.00051715	-1.4482	-0.00085348	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0992	1	11594	11594		32.812	0	1	17343000	+		63126	24239	44449	44512	68360	68360					0.09147016757128767
QLRVSVLV	8	Unmodified	_QLRVSVLV_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6	ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6	nc|ENSG00000151320|Q13023-2|AKAP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.29559326171875	2	457.295102	912.575651	0.38177	0.00017458	-0.37654	-0.00017219	0.005228	2.3907E-06	457.2948357622591	55.981	0.77892	55.981	55.61	56.388	0					62	21	4	0	0	0	0.33369	1	6212	6212		106.42	0	1	6219700			63127	6194;18382	44450	44513	68361	68361					0.11586654548125352
QLRYQIVV	8	Unmodified	_QLRYQIVV_					0	0	0		nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25	nc|ENSG00000109762|Q9H3E2|SNX25	nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7857971191406	2	509.805834	1017.59712	0.040975	2.0889E-05	-3.8305	-0.0019528	-3.7895	-0.0019319	509.8038171050494	87.599	0.60839	87.599	87.236	87.844	0					34	14	3	0	0	0	0.027866	1	10973	10973		31.955	0	1	293720			63128	2995	44451	44514	68362	68362					0.08902039576844345
QLSANRPE	8	Unmodified	_QLSANRPE_					0	0	0			REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7557373046875	2	457.738148	913.461744	-0.30722	-0.00014063	-0.85008	-0.00038911	-1.1573	-0.00052974	457.7391436143203	20.787	0.67013	20.682	20.473	21.143	-0.10477					27	13	3	0	0	0	0.027866	1	566	566		73.975	26.059	1	93883	+		63129	25620	44452	44515	68363	68363					0.0015513971522977954
QLSCNLEHQAR	11	Unmodified	_QLSCNLEHQAR_					0	0	0			REV__ENST00000533587.5_1_11:118402516-118403175:+|nuORF	REV__ENST00000533587.5_1_11:118402516-118403175:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.7767333984375	3	433.547182	1297.61972	-0.55082	-0.00023881	1.9132	0.00082946	1.3624	0.00059066	433.54799740465023	29.525	0.63141	29.352	29.156	29.787	-0.17258					25	14	2	0	0	0	0.024738	1	1804	1804		31.068	0	1	44634	+		63130	24689	44453	44516	68364	68364					-0.01718729087860993
QLSCRRWVPRR	11	Unmodified	_QLSCRRWVPRR_					0	0	0		nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.9281921386719	3	486.273728	1455.79935	-0.10959	-5.3291E-05	2.1643	0.0010524	2.0547	0.00099913	486.2745792198634	45.361	0.13805	45.108	45.019	45.157	-0.25252					5	3	2	0	0	0	0.024759	1	4288	4288		36.318	17.351	1	91104			63131	18334	44454	44517	68365	68365					0.08968619710594794
QLSCTDTDI	9	Unmodified	_QLSCTDTDI_					0	0	0		ENSG00000197706|ENST00000343399|OR6C74	ENSG00000197706|ENST00000343399|OR6C74	ENSG00000197706|ENST00000343399|OR6C74	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.268310546875	2	498.221139	994.427726	0.27422	0.00013662	1.235	0.00061531	1.5092	0.00075193	498.222386331217	36.734	0.58879	36.734	36.298	36.887	0					23	15	2	0	0	0	0.024319	1	2913	2913		39.253	0	1	220530			63132	10035	44455	44518	68366	68366					-0.06971069558687759
QLSDILLDGVP	11	Unmodified	_QLSDILLDGVP_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	586.303955078125	2	585.324254	1168.63395	-1.8921	-0.0011075	1.4769	0.00086446	-0.41521	-0.00024303	585.3252438584211	75.899	0.67744	75.899	75.551	76.228	0					26	17	2	0	0	0	0.024745	1	9355	9355		33.922	4.0801	1	273150	+		63133	28526;24867	44456	44519	68367	68367					0.056382466121021935
QLSDILLDGVP	11	Unmodified	_QLSDILLDGVP_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	585.324254	1168.63395	-1.5181	-0.0008886	1.1633	0.00068093	-0.35479	-0.00020767	585.3251353718557	76.156	0.53043	75.928	75.669	76.199	-0.22843	-0.0080449	0.00056109	NaN	33.922	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199110	+		63134	28526;24867	44456	44519							0.056382466121021935
QLSDILLDGVP	11	Unmodified	_QLSDILLDGVP_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	585.324254	1168.63395	0.85112	0.00049818	-1.1785	-0.00068978	-0.32734	-0.0001916	585.3234335686184	75.969	1.0587	75.981	75.717	76.775	0.011635	0.045087	-0.0021803	NaN	33.922	36	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243350	+		63135	28526;24867	44456	44519							0.056382466121021935
QLSEDLHN	8	Unmodified	_QLSEDLHN_					0	0	0			REV__ENSG00000121207|ENST00000336356|LRAT	REV__ENSG00000121207|ENST00000336356|LRAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.30010986328125	2	478.227613	954.440674	0.74134	0.00035453	1.0496	0.00050194	1.7909	0.00085647	478.2280408566367	72.663	0.82341	72.663	72.17	72.994	0					24	19	2	0	0	0	0.027866	1	8834	8834		53.351	0	1	74927	+		63136	22584	44457	44520	68368	68368					-0.03836870384293434
QLSEVFIQL	9	Unmodified	_QLSEVFIQL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8017578125	2	538.802957	1075.59136	0.0041487	2.2353E-06	-1.3471	-0.00072584	-1.343	-0.00072361	538.8016496239434	87.804	0.63877	87.668	87.388	88.027	-0.13614					34	15	4	0	0	0	0.10174	1	10697	10697		110.12	5.3733	1	1162300			63137	1686;4257	44458	44521	68369	68369					0.05658896274530889
QLSEVFIQL	9	Unmodified	_QLSEVFIQL_					0	0	0		ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2	ENSG00000127616|ENST00000344626|SMARCA4;ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8021850585938	2	538.802957	1075.59136	-0.76977	-0.00041475	-0.21512	-0.00011591	-0.98489	-0.00053066	538.8020676760879	87.877	0.48586	87.739	87.415	87.901	-0.13744					28	11	4	0	0	0	0.086035	1	10681	10681		115.49	8.4865	1	827220			63138	1686;4257	44458	44521	68370	68370					0.05658896274530889
QLSFDYKAF	9	Unmodified	_QLSFDYKAF_					0	0	0			REV__USH2A|p.V1220L|1|0.17|ENSG00000042781|chr1:216199780-216199780|C/A|missense_variant	REV__USH2A|p.V1220L|1|0.17|ENSG00000042781|chr1:216199780-216199780|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2508544921875	2	559.779482	1117.54441	-0.3021	-0.00016911	-0.14354	-8.0348E-05	-0.44564	-0.00024946	559.7787456375347	43.005	0.36048	43.005	42.715	43.075	0					15	9	2	0	0	0	0.024477	1	3992	3992		20.947	2.6848	1	90300	+		63139	37762	44459	44522	68371	68371					-0.009659632766442883
QLSFFNNVH	9	Unmodified	_QLSFFNNVH_					0	0	0		sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	sp|P0CK47|NEC1_EBVB9Nuclearegressprotein1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=NEC1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.7862548828125	2	553.274898	1104.53524	3.3799	0.00187	-1.0977	-0.00060735	2.2822	0.0012627	553.2741716923762	17.867	0.29292	17.867	17.697	17.99	0					13	5	3	0	0	0	0.024541	1	205	205		26.693	7.5894	1	81989			63140	37944	44460	44523	68372	68372					-0.012843118423006672
QLSHICFGP	9	Unmodified	_QLSHICFGP_					0	0	0			REV__ENST00000592122.1_1_17:33694624-33700547:-|nuORF	REV__ENST00000592122.1_1_17:33694624-33700547:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.80035400390625	2	501.247295	1000.48004	-0.97962	-0.00049103	4.3919	0.0022014	3.4123	0.0017104	501.7517202649584	46.527	0.34175	46.374	46.208	46.55	-0.15301					13	9	2	0	0	0	0.024436	1	4591	4591		30.504	14.867	1	70615	+		63141	35741	44461	44524	68373	68373					-0.02018441634413648
QLSHLQLD	8	Unmodified	_QLSHLQLD_					0	0	0			REV__ENST00000312655.8_1_17:57430604-57430868:+|nuORF	REV__ENST00000312655.8_1_17:57430604-57430868:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.2560729980469	2	477.256174	952.497795	-0.38142	-0.00018203	0.51825	0.00024734	0.13683	6.5304E-05	477.256240233275	41.758	1.0024	41.53	41.236	42.238	-0.2278					63	26	4	0	0	0	0.71833	1	3709	3709		65.803	0	1	2549200	+		63142	30223	44462	44525	68374	68374					0.019645968920940504
QLSIPRIFH	9	Unmodified	_QLSIPRIFH_					0	0	0		nc|ENSG00000160563|Q6P2C8-4|MED27	nc|ENSG00000160563|Q6P2C8-4|MED27	nc|ENSG00000160563|Q6P2C8-4|MED27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.8226318359375	2	555.824558	1109.63456	-0.2057	-0.00011433	3.005	0.0016703	2.7993	0.0015559	555.8260540759795	16.702	0.24882	16.494	16.367	16.616	-0.20777					11	6	2	0	0	0	0.98697	1	90	90		23.042	0	1	26530			63143	18426	44463	44526	68375	68375					0.084131308424503
QLSLCRRHSF	10	Unmodified	_QLSLCRRHSF_					0	0	0		ENST00000590834.5_1_17:42393912-42395603:+|nuORF	ENST00000590834.5_1_17:42393912-42395603:+|nuORF	ENST00000590834.5_1_17:42393912-42395603:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2207946777344	3	416.22063	1245.64006	2.0985	0.00087345	-1.5063	-0.00062695	0.59222	0.0002465	416.21973212096015	24.551	2.2653	24.37	23.582	25.848	-0.18089					142	52	4	0	0	0	1.0728	1	1072	1072		36.318	10.254	1	1613200			63144	17340	44464	44527	68376	68376					0.02706486362603755
QLSLGVIPA	9	Unmodified	_QLSLGVIPA_					0	0	0		ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	ENSG00000163295|ENST00000295463|ALPI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.2919616699219	2	449.273835	896.533118	0.12518	5.6239E-05	0.041829	1.8793E-05	0.16701	7.5032E-05	449.27371517612767	57.048	1.3689	56.823	55.952	57.321	-0.22479					72	35	3	0	0	0	0.024325	1	6257	6257		31.955	0	1	1784100			63145	7058	44465	44528	68377	68377					0.08071259419887156
QLSLRPLEV	9	Unmodified	_QLSLRPLEV_					0	0	0		ENST00000453828.1_1_3:41012284-41012793:-|nuORF	ENST00000453828.1_1_3:41012284-41012793:-|nuORF	ENST00000453828.1_1_3:41012284-41012793:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.8179321289062	2	527.816399	1053.61824	-1.6583	-0.00087525	0.5804	0.00030634	-1.0779	-0.00056891	527.8165664588033	62.353	0.81612	62.353	62.08	62.896	0					42	23	2	0	0	0	0.53979	1	7245	7245		56.721	0	1	4048600			63146	14555	44466	44529	68378	68378					0.09358004885712035
QLSLTRRP	8	Unmodified	_QLSLTRRP_					0	0	0			REV__nc|ENSG00000121753|O60241-4|ADGRB2;REV__ENST00000465256.5_1_1:32193589-32201220:-|nuORF	REV__nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.77691650390625	2	485.793258	969.571963	-1.5946	-0.00077462	0.4168	0.00020248	-1.1778	-0.00057214	485.79333757601785	37.92	0.33636	37.92	37.735	38.071	0					12	9	2	0	0	0	0.027866	1	3129	3129		53.351	9.2347	1	115140	+		63147	22606;32998	44467	44530	68379	68379					0.08595984774274257
QLSNSSLLL	9	Unmodified	_QLSNSSLLL_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7936706542969	2	487.779482	973.544411	-0.3802	-0.00018545	1.1089	0.00054089	0.72868	0.00035544	487.78008100833426	36.494	0.6983	36.289	35.987	36.685	-0.20518					28	17	2	0	0	0	0.024292	1	2840	2840		40.778	8.8233	1	1122400	+		63148	22029	44468	44531	68380	68380					0.056580367233777906
QLSPPRTK	8	Unmodified	_QLSPPRTK_					0	0	0		nc|ENSG00000285253|Q6N043-4|ZNF280D;ENST00000560121.1_1_15:56958875-56971015:-|nuORF;nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D	nc|ENSG00000285253|Q6N043-4|ZNF280D;nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.2297668457031	2	463.774534	925.534515	-0.91621	-0.00042491	0.9931	0.00046058	0.076898	3.5663E-05	463.7747565356546	39.572	0.74926	39.473	39.018	39.767	-0.098755					32	20	2	0	0	0	0.027866	1	3370	3370		8.2351	3.0149	1	849190			63149	5172;18815	44469	44532	68381	68381					0.06876893508660942
QLSPQEGAL	9	Unmodified	_QLSPQEGAL_					0	0	0		ENST00000376741.4_1_17:46005306-46005357:+|nuORF	ENST00000376741.4_1_17:46005306-46005357:+|nuORF	ENST00000376741.4_1_17:46005306-46005357:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.77703857421875	2	471.748182	941.481811	-0.67446	-0.00031818	1.8062	0.00085207	1.1317	0.00053389	471.7488079171473	28.843	0.59345	28.693	28.363	28.956	-0.14952					18	13	2	0	0	0	0.024319	1	1717	1717		56.721	14.325	1	137390			63150	13190	44470	44533	68382	68382					0.008728906551823457
QLSPQEGAL	9	Unmodified	_QLSPQEGAL_					0	0	0		ENST00000376741.4_1_17:46005306-46005357:+|nuORF	ENST00000376741.4_1_17:46005306-46005357:+|nuORF	ENST00000376741.4_1_17:46005306-46005357:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.748182	941.481811	-1.2481	-0.0005888	1.9845	0.00093617	0.73635	0.00034737	471.74921898003566	28.789	0.4311	28.544	28.322	28.753	-0.24524	-0.057441	0.00035016	NaN	47.657	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96007			63151	13190	44470	44533							0.008728906551823457
QLSPRLLEV	9	Unmodified	_QLSPRLLEV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.8155517578125	2	527.816399	1053.61824	-1.6583	-0.00087525	0.5804	0.00030634	-1.0779	-0.00056891	527.8165664588033	62.353	0.81612	62.353	62.08	62.896	0					42	23	2	0	0	0	0.041068	3	7261	7247;7253;7261		132.76	5.4664	1	4048600			63152	18521	44471	44534	68383;68384;68385	68385					0.09358004885712035
QLSPRLLEV	9	Unmodified	_QLSPRLLEV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.816162109375	2	527.816399	1053.61824	-1.5048	-0.00079426	-0.41731	-0.00022026	-1.9221	-0.0010145	527.8160561223148	62.597	0.80382	62.358	62.144	62.947	-0.23926					43	22	2	0	0	0	0.086035	1	7259	7259		115.49	5.3742	1	3869900			63153	18521	44471	44534	68386	68386					0.09358004885712035
QLSPRLLEV	9	Unmodified	_QLSPRLLEV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.8152465820312	2	527.816399	1053.61824	-0.83981	-0.00044327	-0.86244	-0.00045521	-1.7022	-0.00089847	527.8157903884639	62.245	0.82208	62.308	62.16	62.982	0.062767					38	20	2	0	0	0	0.067814	4	7169	7155;7160;7169;7182		122.18	14.088	1	4316800			63154	18521	44471	44534	68387;68388;68389;68390	68389					0.09358004885712035
QLSPTTIGVG	10	Unmodified	_QLSPTTIGVG_					0	0	0		ENST00000425013.6_1_7:5661194-5661305:-|nuORF	ENST00000425013.6_1_7:5661194-5661305:-|nuORF	ENST00000425013.6_1_7:5661194-5661305:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78009033203125	2	486.771657	971.528761	-0.58609	-0.00028529	-0.73302	-0.00035682	-1.3191	-0.00064211	486.77088391621595	25.976	0.26294	25.953	25.82	26.083	-0.023087					8	5	2	0	0	0	0.03519	1	1264	1264		19.104	13.182	1	69317			63155	14057	44472	44535	68391	68391					0.041857502063294305
QLSPTTIGVG	10	Unmodified	_QLSPTTIGVG_					0	0	0		ENST00000425013.6_1_7:5661194-5661305:-|nuORF	ENST00000425013.6_1_7:5661194-5661305:-|nuORF	ENST00000425013.6_1_7:5661194-5661305:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.771657	971.528761	-0.87603	-0.00042642	2.6542	0.001292	1.7782	0.00086558	486.7729550852543	25.967	0.35016	25.804	25.544	25.894	-0.16331	-0.074692	0.0014833	NaN	19.104	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47262			63156	14057	44472	44535							0.041857502063294305
QLSPVLLYL	9	Unmodified	_QLSPVLLYL_					0	0	0		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3222045898438	2	523.318243	1044.62193	-0.83724	-0.00043814	0.66834	0.00034976	-0.1689	-8.8387E-05	523.3183504608619	96.928	0.93294	96.928	96.571	97.504	0					50	20	3	0	0	0	0.35646	2	12371	12360;12371		68.787	2.3575	1	900790			63157	5065	44473	44536	68392;68393	68393					0.1014067465955577
QLSQLLVSH	9	Unmodified	_QLSQLLVSH_					0	0	0		ENST00000478344.6_1_9:140240296-140248823:-|nuORF;ENST00000491734.6_1_9:140201404-140249090:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF;ENSG00000187609|ENST00000340951|EXD3	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7686767578125	2	512.792924	1023.57129	-0.82919	-0.0004252	-0.96848	-0.00049663	-1.7977	-0.00092183	512.7921398329513	33.338	0.68246	33.338	32.979	33.662	0					25	18	2	0	0	0	0.024523	1	2409	2409		21.96	6.3181	1	140590			63158	15143	44474	44537	68394	68394					0.060451453345763184
QLSRHDRW	8	Unmodified	_QLSRHDRW_					0	0	0			REV__ENST00000581320.1_1_17:8191674-8192331:-|nuORF	REV__ENST00000581320.1_1_17:8191674-8192331:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.8633422851562	2	549.283589	1096.55262	0.94497	0.00051906	4.4304	0.0024335	5.3754	0.0029526	549.2859825759714	36.23	0.62525	36.032	35.708	36.334	-0.19829					29	16	3	0	0	0	0.027866	1	2855	2855		23.042	2.0956	1	437810	+		63159	35531	44475	44538	68395	68395					0.008210284833694459
QLSRRRLE	8	Unmodified	_QLSRRRLE_					0	0	0			REV__ENST00000297156.3_1_5:134086636-134086738:+|nuORF	REV__ENST00000297156.3_1_5:134086636-134086738:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.31591796875	2	529.314889	1056.61522	-0.1548	-8.1939E-05	2.1583	0.0011424	2.0035	0.0010605	529.3159769167021	36.361	0.84978	36.145	35.879	36.729	-0.21661					63	21	5	0	0	0	0.53523	1	2863	2863		82.305	7.2617	1	7885400	+		63160	30012	44476	44539	68396	68396					0.0891817455153614
QLSRTACSAT	10	Unmodified	_QLSRTACSAT_					0	0	0			REV__ENST00000215555.6_1_19:8486899-8495545:+|nuORF	REV__ENST00000215555.6_1_19:8486899-8495545:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.8112182617188	2	519.255848	1036.49714	-0.72696	-0.00037748	1.2972	0.00067358	0.57025	0.0002961	519.2564962404174	60.869	1.095	60.656	59.817	60.912	-0.2134					40	17	3	0	0	0	0.03519	1	6973	6973		25.574	0.12388	1	167960	+		63161	29307	44477	44540	68397	68397					-0.019645658192757764
QLSSLLVSL	9	Unmodified	_QLSSLLVSL_					0	0	0			REV__nc|ENSG00000100330|Q13615-3|MTMR3	REV__nc|ENSG00000100330|Q13615-3|MTMR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2931823730469	2	480.292225	958.569897	-0.0088503	-4.2508E-06	0.23448	0.00011262	0.22563	0.00010837	480.29218125534146	86.732	0.72034	86.753	86.417	87.137	0.021255					41	16	3	0	0	0	0.32811	1	10820	10820		71.877	2.2498	1	779620	+		63162	21090	44478	44541	68398	68398					0.08895511245816579
QLSTIKEAFV	10	Unmodified	_QLSTIKEAFV_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.3200073242188	2	568.321514	1134.62847	0.13037	7.409E-05	-3.0687	-0.001744	-2.9383	-0.0016699	568.3199570056347	20.365	0.93317	20.142	19.779	20.712	-0.22344					56	18	5	0	0	0	0.96822	1	525	525		49.536	7.1399	1	1781200	+		63163	24041	44479	44542	68399	68399					0.06654567820260127
QLSVSKVKL	9	Unmodified	_QLSVSKVKL_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2801818847656	2	501.321317	1000.62808	-0.67158	-0.00033668	-1.5408	-0.00077245	-2.2124	-0.0011091	501.32003217556246	34.559	0.43282	34.609	34.441	34.874	0.050255					23	10	3	0	0	0	0.024541	1	2532	2532		19.997	5.8596	1	126600			63164	1648	44480	44543	68400	68400					0.1277919289109377
QLSWLSVSM	9	Unmodified	_QLSWLSVSM_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2977294921875	2	525.76806	1049.52157	-0.40924	-0.00021517	-0.45684	-0.00024019	-0.86608	-0.00045535	525.7675241936018	55.097	0.1754	54.947	54.857	55.033	-0.15036					6	4	2	0	0	0	0.024381	1	6050	6050		37.159	8.0096	1	45913			63165	1825	44481	44544	68401	68401					-0.0012130566574342083
QLSWLSVSM	9	Unmodified	_QLSWLSVSM_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.76806	1049.52157	-0.76973	-0.0004047	-4.3619	-0.0022933	-5.1316	-0.002698	525.7673981839163	55.038	0.22424	54.892	54.761	54.986	-0.14609	-0.027216	-0.0010151	NaN	44.117	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70054			63166	1825	44481	44544							-0.0012130566574342083
QLTAAFFEL	9	Unmodified	_QLTAAFFEL_					0	0	0			REV__ENST00000420969.1_1_2:162361488-162361515:-|nuORF	REV__ENST00000420969.1_1_2:162361488-162361515:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2590942382812	2	520.276575	1038.5386	-0.5345	-0.00027809	-1.4486	-0.00075365	-1.9831	-0.0010317	520.2756946769871	85.227	1.1597	85.17	84.689	85.849	-0.057617					46	27	4	0	0	0	0.024354	1	10625	10625		38.806	0	1	309200	+		63167	32173	44482	44545	68402	68402					0.020869382117098212
QLTCHTLGK	9	Unmodified	_QLTCHTLGK_					0	0	0			REV__ENST00000521729.5_1_5:154250285-154250333:+|nuORF	REV__ENST00000521729.5_1_5:154250285-154250333:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2926025390625	2	500.765852	999.51715	-0.816	-0.00040863	0.17398	8.7122E-05	-0.64202	-0.0003215	501.2659110523197	57.499	0.59024	57.266	56.952	57.543	-0.23363					28	15	4	0	0	0	0.024288	1	6238	6238		44.377	14.059	1	295700	+		63168	34324	44483	44546	68403	68403					0.017372299113503686
QLTEELHEQL	10	Unmodified	_QLTEELHEQL_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.8768310546875	3	413.878704	1238.61428	-0.71626	-0.00029645	-2.0853	-0.00086306	-2.8016	-0.0011595	413.87692813687477	29.592	1.849	29.671	28.782	30.63	0.078346					102	45	4	0	0	0	0.67616	1	1801	1801		68.846	12.214	1	3568300			63169	5866	44484	44547	68404	68404					0.004518706013186602
QLTGPVMPV	9	Unmodified	_QLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2600402832031	2	471.259871	940.505189	0.84083	0.00039625	-0.5461	-0.00025736	0.29473	0.00013889	471.2594588265359	68.314	0.86075	68.333	68.08	68.941	0.018913					45	22	3	0	0	0	0.36105	1	8107	8107		68.485	2.6815	1	1579200			63170	7696	44485	44548	68405	68405					0.03255613168164473
QLTGPVMPV	9	Unmodified	_QLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.259871	940.505189	0.40822	0.00019238	-0.19535	-9.206E-05	0.21287	0.00010032	471.2596514256726	68.296	0.87289	68.296	68.026	68.898	0	-0.05046	-2.0043E-05	NaN	68.485	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1202400			63171	7696	44485	44548							0.03255613168164473
QLTGPVMPV	9	Unmodified	_QLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.259871	940.505189	0.55232	0.00026029	-0.26468	-0.00012473	0.28763	0.00013555	471.25958424544615	68.612	0.81238	68.32	68.013	68.825	-0.29267	-0.027036	-8.5391E-05	NaN	68.485	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1420200			63172	7696	44485	44548							0.03255613168164473
QLTGPVMPV	9	Unmodified	_QLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.259871	940.505189	-0.56782	-0.00026759	0.71728	0.00033802	0.14946	7.0434E-05	471.26009280687873	68.645	0.56386	68.383	68.142	68.706	-0.26166	0.036832	0.00084013	NaN	68.485	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621090			63173	7696	44485	44548							0.03255613168164473
QLTGPVMPV	9	Unmodified	_QLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.259871	940.505189	0.51403	0.00024224	-0.71667	-0.00033774	-0.20265	-9.5499E-05	471.2596005464211	68.612	0.67645	68.369	68.072	68.748	-0.24277	0.022784	-0.0005114	NaN	68.485	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900830			63174	7696	44485	44548							0.03255613168164473
QLTGPVMPV	9	Unmodified	_QLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.259871	940.505189	0.11502	5.4203E-05	-0.21923	-0.00010332	-0.10422	-4.9113E-05	471.2597614570881	68.608	0.55944	68.378	68.077	68.637	-0.23048	0.031347	-4.2554E-05	NaN	68.485	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698980			63175	7696	44485	44548							0.03255613168164473
QLTHNFTLD	9	Unmodified	_QLTHNFTLD_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7896728515625	2	544.772188	1087.52982	-1.3065	-0.00071176	-3.7129	-0.0020227	-5.0194	-0.0027345	544.768296511135	33.365	0.13246	33.372	33.255	33.388	0.0066261					5	3	2	0	0	0	0.024506	1	2385	2385		16.473	0	1	60117	+		63176	23785	44486	44549	68406	68406					-0.0104403542475211
QLTIRWLP	8	Unmodified	_QLTIRWLP_					0	0	0			REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF	REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7909545898438	2	513.808377	1025.6022	-0.33748	-0.0001734	-3.5034	-0.0018001	-3.8409	-0.0019735	513.8063957744781	41.476	0.45177	41.499	41.254	41.706	0.023006					16	12	2	0	0	0	0.027866	1	3703	3703		31.955	15.482	1	167610	+		63177	33233	44487	44550	68407	68407					0.0904234343945518
QLTLHLQH	8	Unmodified	_QLTLHLQH_					0	0	0			REV__ENST00000330720.6_1_19:48892924-48894655:-|nuORF	REV__ENST00000330720.6_1_19:48892924-48894655:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.2381591796875	2	495.279983	988.545414	-0.46453	-0.00023007	1.3782	0.00068261	0.91369	0.00045253	495.2803315953415	31.472	0.57049	31.231	30.995	31.565	-0.24109					26	14	2	0	0	0	0.027866	1	2076	2076		29.15	4.9468	1	413140	+		63178	30465	44488	44551	68408	68408					0.050682958829384006
QLTLHLQH	8	Unmodified	_QLTLHLQH_					0	0	0			REV__ENST00000330720.6_1_19:48892924-48894655:-|nuORF	REV__ENST00000330720.6_1_19:48892924-48894655:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.279983	988.545414	-0.41216	-0.00020414	1.1738	0.00058134	0.76159	0.0003772	495.28019536731165	31.36	0.64661	31.208	30.968	31.615	-0.15231	0.002069	0.00010832	NaN	29.15	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420480	+		63179	30465	44488	44551							0.050682958829384006
QLTLVSSGVA	10	Unmodified	_QLTLVSSGVA_					0	0	0			REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25006103515625	2	487.779482	973.544411	-0.70486	-0.00034382	0.095085	4.6381E-05	-0.60978	-0.00029744	487.7795458041124	25.716	0.38806	25.716	25.569	25.957	0					11	8	2	0	0	0	0.03519	1	1267	1267		40.778	0	1	53640	+		63180	20542	44489	44552	68409	68409					0.056580367233777906
QLTLYMII	8	Unmodified	_QLTLYMII_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.26861572265625	2	497.785721	993.55689	-0.26677	-0.0001328	-3.0898	-0.0015381	-3.3566	-0.0016709	497.7835504060536	36.459	0.17424	36.459	36.334	36.508	0					6	4	2	0	0	0	0.027866	1	2881	2881		30.504	0	1	23445	+		63181	25683	44490	44553	68410	68410					0.05985356862061053
QLTNVILHL	9	Unmodified	_QLTNVILHL_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.818603515625	2	525.818941	1049.62333	-0.0023038	-1.2114E-06	-0.4234	-0.00022263	-0.42571	-0.00022385	525.8185920761849	70.972	0.64467	70.972	70.656	71.301	0					49	15	4	0	0	0	0.33245	2	8604	8586;8604		71.296	17.888	1	3759700			63182	2182	44491	44554	68411;68412	68412					0.10050308748327552
QLTNVILHL	9	Unmodified	_QLTNVILHL_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.818603515625	2	525.818941	1049.62333	0.57227	0.00030091	-0.85572	-0.00044996	-0.28346	-0.00014905	525.8183437753448	71.339	0.70787	71.051	70.719	71.427	-0.28858					53	17	4	0	0	0	0.11848	2	8603	8603;8613		106.42	32.44	1	3427100			63183	2182	44491	44554	68413;68414	68413					0.10050308748327552
QLTNVILHL	9	Unmodified	_QLTNVILHL_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.8189697265625	2	525.818941	1049.62333	0.16498	8.6749E-05	-0.59205	-0.00031131	-0.42707	-0.00022456	525.8185870541633	71.093	0.76727	71.104	70.812	71.579	0.010742					52	19	4	0	0	0	0.096521	2	8531	8520;8531		111.65	32.197	1	3370600			63184	2182	44491	44554	68415;68416	68416					0.10050308748327552
QLTNVILHL	9	Unmodified	_QLTNVILHL_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.818941	1049.62333	-0.040586	-2.1341E-05	-0.16486	-8.6686E-05	-0.20545	-0.00010803	525.8186262086276	71.265	0.73934	70.993	70.658	71.397	-0.27185	0.015101	0.00034779	NaN	111.65	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313410			63185	2182	44491	44554							0.10050308748327552
QLTNVILHL	9	Unmodified	_QLTNVILHL_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.818941	1049.62333	-0.10199	-5.3628E-05	0.46211	0.00024298	0.36012	0.00018936	525.8189706348182	71.174	0.55052	70.917	70.695	71.246	-0.25713	-0.060934	0.0010071	NaN	111.65	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369070			63186	2182	44491	44554							0.10050308748327552
QLTNVILHL	9	Unmodified	_QLTNVILHL_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.818941	1049.62333	0.70167	0.00036895	-0.59896	-0.00031494	0.10272	5.4011E-05	525.8184934034637	71.044	0.5218	70.83	70.695	71.217	-0.21424	-0.14809	-0.00010872	NaN	111.65	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340280			63187	2182	44491	44554							0.10050308748327552
QLTQHKKT	8	Unmodified	_QLTQHKKT_					0	0	0		nc|ENSG00000198039|Q14593-2|ZNF273;ENSG00000198039|ENST00000476120|ZNF273	nc|ENSG00000198039|Q14593-2|ZNF273	nc|ENSG00000198039|Q14593-2|ZNF273	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2734375	2	492.285266	982.555979	-0.45376	-0.00022338	2.6796	0.0013191	2.2258	0.0010957	492.28670471300245	23.507	0.25327	23.584	23.351	23.604	0.076241					7	5	2	0	0	0	0.027866	1	880	880		20.947	0	1	182280			63188	10087	44492	44555	68417	68417					0.06400278537375925
QLTQSIVAR	9	Unmodified	_QLTQSIVAR_					0	0	0			REV__ENST00000522335.5_1_8:144462155-144464818:+|nuORF	REV__ENST00000522335.5_1_8:144462155-144464818:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3030700683594	2	508.298373	1014.58219	-0.09145	-4.6484E-05	-0.2254	-0.00011457	-0.31685	-0.00016105	508.2982143435503	46.753	0.56126	46.753	46.515	47.076	0					25	14	2	0	0	0	0.024487	1	4667	4667		11.511	0	1	1335100	+		63189	25173	44493	44556	68418	68418					0.07548547708847764
QLTSTAEQP	9	Unmodified	_QLTSTAEQP_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.778076171875	2	487.743096	973.47164	-0.34265	-0.00016713	0.95178	0.00046423	0.60913	0.0002971	487.74335185248447	56.379	0.39576	56.379	56.139	56.535	0					12	10	2	0	0	0	0.024427	1	6301	6301		42.396	23.293	1	185130	+		63190	22540	44494	44557	68419	68419					-0.016157170700353163
QLTSTAEQP	9	Unmodified	_QLTSTAEQP_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.743096	973.47164	0.30667	0.00014957	-0.58261	-0.00028416	-0.27594	-0.00013459	487.74272727606893	56.627	0.34882	56.425	56.171	56.52	-0.20209	0.031234	-0.00048561	NaN	42.396	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135370	+		63191	22540	44494	44557							-0.016157170700353163
QLTSTAEQP	9	Unmodified	_QLTSTAEQP_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.743096	973.47164	0.3782	0.00018447	-0.47287	-0.00023064	-0.094663	-4.6171E-05	487.74283694884423	56.602	0.39459	56.377	56.149	56.544	-0.22479	-0.016587	-0.00037856	NaN	42.396	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104800	+		63192	22540	44494	44557							-0.016157170700353163
QLTTGCEKW	9	Unmodified	_QLTTGCEKW_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2559814453125	2	533.255317	1064.49608	-0.67201	-0.00035835	0.35892	0.0001914	-0.31309	-0.00016696	533.2555964440941	40.859	3.0577	40.631	39.259	42.316	-0.2278					145	80	2	0	0	0	0.247	1	3593	3593		82.75	2.2959	1	2009700			63193	5212	44495	44558	68420	68420					-0.03358780188182209
QLTTGCEKW	9	Unmodified	_QLTTGCEKW_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2550048828125	2	533.255317	1064.49608	-1.2428	-0.00066274	1.2865	0.00068604	0.043681	2.3293E-05	533.2558982323878	40.937	2.6949	40.707	39.237	41.932	-0.23029					156	71	3	0	0	0	0.10464	1	3558	3558		109.48	1.3908	1	1866700			63194	5212	44495	44558	68421	68421					-0.03358780188182209
QLTTRSKAI	9	Unmodified	_QLTTRSKAI_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3060302734375	2	509.306198	1016.59784	0.37955	0.00019331	-1.0569	-0.00053829	-0.67736	-0.00034498	509.3055250394513	22.117	0.70887	21.928	21.482	22.191	-0.18894					25	10	3	0	0	0	0.34489	1	756	756		69.628	6.3214	1	507160			63195	4776	44496	44559	68422	68422					0.09020834225896124
QLTTRSKAI	9	Unmodified	_QLTTRSKAI_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.30706787109375	2	509.306198	1016.59784	-0.65386	-0.00033301	0.10927	5.565E-05	-0.54459	-0.00027736	509.30611579476954	22.204	0.74357	22.019	21.764	22.507	-0.18539					21	8	3	0	0	0	0.33603	1	757	757		70.816	9.8443	1	444550			63196	4776	44496	44559	68423	68423					0.09020834225896124
QLTWLRWLTLR	11	Unmodified	_QLTWLRWLTLR_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2974853515625	3	495.961144	1484.8616	-0.12611	-6.2545E-05	-4.2673	-0.0021164	-4.3934	-0.002179	496.29376151366205	100.88	0.99232	100.89	100.61	101.61	0.0090332					54	22	3	0	0	0	0.024767	1	12858	12858		25.068	3.2874	1	419600	+		63197	33096	44497	44560	68424	68424					0.13856669330562
QLTWLRWLTLR	11	Unmodified	_QLTWLRWLTLR_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	495.961144	1484.8616	0.36433	0.00018069	-5.2522	-0.0026049	-4.8878	-0.0024242	495.9583570488859	100.98	1.46	100.98	100.14	101.6	0	0.069426	-0.00023458	NaN	25.068	75	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365210	+		63198	33096	44497	44560							0.13856669330562
QLTWLRWLTLR	11	Unmodified	_QLTWLRWLTLR_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	495.961144	1484.8616	0.35669	0.00017691	-5.0656	-0.0025124	-4.7089	-0.0023354	496.2932132305971	100.97	1.1921	100.97	100.52	101.71	-0.0054474	0.05473	4.2967E-05	NaN	25.068	65	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440340	+		63199	33096	44497	44560							0.13856669330562
QLTWLRWLTLR	11	Unmodified	_QLTWLRWLTLR_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	495.961144	1484.8616	0.44843	0.00022241	-5.1882	-0.0025732	-4.7398	-0.0023508	496.2930675263283	101.02	0.99789	100.89	100.55	101.55	-0.12576	-0.020071	-0.00013948	NaN	25.068	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335570	+		63200	33096	44497	44560							0.13856669330562
QLTWLRWLTLR	11	Unmodified	_QLTWLRWLTLR_					0	0	0			REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	REV__ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	495.961144	1484.8616	0.037009	1.8355E-05	-5.1476	-0.002553	-5.1106	-0.0025347	495.9584826884144	101.09	0.9717	100.92	100.63	101.6	-0.17178	0.0054798	-7.9071E-05	NaN	25.068	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254050	+		63201	33096	44497	44560							0.13856669330562
QLVAQRRK	8	Unmodified	_QLVAQRRK_					0	0	0			REV__ENST00000412830.7_1_12:108082411-108082552:+|nuORF	REV__ENST00000412830.7_1_12:108082411-108082552:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7638244628906	2	499.814525	997.614496	0.51673	0.00025827	1.4873	0.00074339	2.0041	0.0010017	499.81553188945713	99.693	0.51631	99.693	99.313	99.829	0					15	11	2	0	0	0	0.027866	1	12725	12725		24.203	1.1603	1	102350	+		63202	32009	44498	44561	68425	68425					0.11559379902507771
QLVASYCPEV	10	Unmodified	_QLVASYCPEV_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.3240966796875	2	554.7708	1107.52705	-0.10028	-5.5632E-05	0.064778	3.5937E-05	-0.035502	-1.9696E-05	554.7706256067579	50.515	0.85308	50.596	50.18	51.033	0.08099					60	24	3	0	0	0	0.03519	1	5210	5210		37.812	7.3079	1	1586600			63203	9401	44499	44562	68426	68426					-0.022416268739334555
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.8186645507812	2	528.818607	1055.62266	-0.31737	-0.00016783	1.6737	0.00088511	1.3564	0.00071727	528.8191090467154	69.98	1.3609	69.98	69.383	70.744	0					94	36	4	0	0	0	0.012922	6	8440	8429;8440;8452;8461;8469;8479		172.25	73.619	1	15950000			63204	4527	44500	44563	68427;68428;68429;68430;68431;68432	68428					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8185424804688	2	528.818607	1055.62266	0.4704	0.00024876	1.084	0.00057325	1.5544	0.00082201	528.8187812301243	70.314	1.4505	70.021	69.467	70.918	-0.29291					101	39	4	0	0	0	0.020687	5	8437	8437;8453;8465;8473;8510		148.99	55.844	1	14037000			63205	4527	44500	44563	68433;68434;68435;68436;68437	68433					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8182373046875	2	528.818607	1055.62266	-0.23621	-0.00012491	2.0599	0.0010893	1.8237	0.0009644	528.8191246765933	70.082	1.421	70.095	69.349	70.77	0.012421					99	36	4	0	0	0	0.014475	4	8369	8358;8369;8381;8399		185.72	61.638	1	12808000			63206	4527	44500	44563	68438;68439;68440;68441	68439					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.8184204101562	2	528.818607	1055.62266	-0.30241	-0.00015992	1.3553	0.0007167	1.0529	0.00055678	528.818815433576	70.328	1.4057	70.056	69.741	71.147	-0.27185					47	35	2	0	0	0	0.013719	4	8164	8164;8174;8186;8198		185.72	58.608	1	7437000			63207	4527	44500	44563	68442;68443;68444;68445	68442					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MSMS	OPSCC_40_ClassI_Rep-2	5	528.8186645507812	2	528.818607	1055.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.123	1	69.872	69.372	70.372	-0.25063								0	0	0	0.014301	1	8161	8161		154.12	44.64	1				63208	4527	44500	44563	68446	68446					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MSMS	OPSCC_40_ClassI_Rep-2	5	528.818359375	2	528.818607	1055.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.186	1	69.936	69.436	70.436	-0.25063								0	0	0	0.014301	1	8170	8170		154.12	55.536	1				63209	4527	44500	44563	68447	68447					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MSMS	OPSCC_40_ClassI_Rep-2	5	528.8182983398438	2	528.818607	1055.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.262	1	70.012	69.512	70.512	-0.25063								0	0	0	0.0070383	1	8181	8181		172.25	51.38	1				63210	4527	44500	44563	68448	68448					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MSMS	OPSCC_40_ClassI_Rep-2	5	528.8184814453125	2	528.818607	1055.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.354	1	70.096	69.596	70.596	-0.25713								0	0	0	0.0070383	1	8195	8195		172.25	62.77	1				63211	4527	44500	44563	68449	68449					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.8184204101562	2	528.818607	1055.62266	0.21505	0.00011372	-0.5112	-0.00027033	-0.29615	-0.00015661	528.8183166616899	70.171	0.60631	69.957	69.646	70.253	-0.21425					37	14	4	0	0	0	0.012922	4	8152	8141;8152;8164;8178		172.25	68.235	1	7537800			63212	4527	44500	44563	68450;68451;68452;68453	68451					0.09707469308591499
QLVDILQCL	9	Carbamidomethyl (C)	_QLVDILQC(Carbamidomethyl (C))L_	QLVDILQC(1)L		QLVDILQC(99)L		0	1	0			REV__ENSG00000139354|ENST00000547754|GAS2L3	REV__ENSG00000139354|ENST00000547754|GAS2L3	MSMS	OPSCC_40_ClassI_Rep-1	4	551.3024291992188	2	551.302267	1100.58998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.36	1	70.089	69.589	70.589	-0.27185								0	0	0	0.073652	1	8184	8184		98.629	26.752	1		+		63213	23938	44501	44564	68454	68454	312				0.04370938914098588
QLVDLASTE	9	Unmodified	_QLVDLASTE_					0	0	0		ENSG00000141580|ENST00000392325|WDR45B;ENST00000573656.5_1_17:80576964-80583409:-|nuORF	ENSG00000141580|ENST00000392325|WDR45B	ENSG00000141580|ENST00000392325|WDR45B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2515563964844	2	488.253297	974.492041	-0.59172	-0.00028891	-3.3641	-0.0016426	-3.9559	-0.0019315	488.25171356817253	29.212	3.9385	29.215	26.802	30.741	0.0031376					219	98	6	0	0	0	0.77768	1	1829	1829		40.778	1.972	1	6146300			63214	5509	44502	44565	68455	68455					0.0037745358976053467
QLVDTTVEL	9	Unmodified	_QLVDTTVEL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.2768249511719	2	509.276772	1016.53899	0.52365	0.00026668	-0.27519	-0.00014015	0.24846	0.00012654	509.276541544826	70.929	1.2565	70.929	70.613	71.869	0					67	31	4	0	0	0	0.19099	2	8568	8568;8578		90.37	13.052	1	6719600			63215	3459	44503	44566	68456;68457	68456					0.031383131409029374
QLVDTTVEL	9	Unmodified	_QLVDTTVEL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.2769775390625	2	509.276772	1016.53899	-0.11199	-5.7033E-05	0.42154	0.00021468	0.30955	0.00015765	509.2768713770091	70.986	1.117	70.997	70.725	71.842	0.010735					76	28	5	0	0	0	0.027092	2	8506	8494;8506		143.89	25.144	1	6957400			63216	3459	44503	44566	68458;68459	68459					0.031383131409029374
QLVDTTVEL	9	Unmodified	_QLVDTTVEL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.276772	1016.53899	0.17683	9.0053E-05	0.82704	0.00042119	1.0039	0.00051125	509.2772094701892	71.342	0.52128	71.066	70.833	71.354	-0.27509	0.064769	0.00069242	NaN	143.89	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278370			63217	3459	44503	44566							0.031383131409029374
QLVDTTVEL	9	Unmodified	_QLVDTTVEL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.276772	1016.53899	-0.12827	-6.5327E-05	1.0404	0.00052983	0.91208	0.0004645	509.2771677497699	71.299	0.54293	71.039	70.781	71.324	-0.26001	0.037724	0.00090969	NaN	143.89	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633430			63218	3459	44503	44566							0.031383131409029374
QLVDTTVEL	9	Unmodified	_QLVDTTVEL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.276772	1016.53899	0.57121	0.0002909	-0.077031	-3.923E-05	0.49418	0.00025167	509.27670850025567	71.205	0.51823	70.999	70.746	71.265	-0.20613	-0.0024821	-0.00022843	NaN	143.89	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659210			63219	3459	44503	44566							0.031383131409029374
QLVFGSLVW	9	Unmodified	_QLVFGSLVW_					0	0	0			REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.78955078125	2	524.794935	1047.57532	0.095177	4.9948E-05	-0.24915	-0.00013075	-0.15397	-8.0803E-05	524.7945878385194	76.154	0.8638	75.985	75.703	76.567	-0.16854					32	20	2	0	0	0	0.024427	1	9024	9024		34.173	6.2903	1	336950	+		63220	33207	44504	44567	68460	68460					0.05343234828274035
QLVFNNLCTT	10	Unmodified	_QLVFNNLCTT_					0	0	0		ENST00000465519.5_1_3:195925313-195934370:-|nuORF	ENST00000465519.5_1_3:195925313-195934370:-|nuORF	ENST00000465519.5_1_3:195925313-195934370:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.298828125	2	576.789524	1151.56449	0.55621	0.00032082	2.21	0.0012747	2.7662	0.0015955	577.2933973569228	19.791	0.24633	19.59	19.455	19.701	-0.2001					6	4	2	0	0	0	0.03519	1	469	469		16.007	0	1	10078			63221	14785	44505	44568	68461	68461					-0.0052253560832014045
QLVGLQKP	8	Unmodified	_QLVGLQKP_					0	0	0		X9_LINE_dup501|chr12:123390764-123390851:+|1.6249029807997828|0.3437392533533853|2.24|520.0|2|1|sense	X9_LINE_dup501|chr12:123390764-123390851:+|1.6249029807997828|0.3437392533533853|2.24|520.0|2|1|sense	X9_LINE_dup501|chr12:123390764-123390851:+|1.6249029807997828|0.3437392533533853|2.24|520.0|2|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78753662109375	2	441.774003	881.533452	-0.39309	-0.00017366	3.694	0.0016319	3.3009	0.0014583	441.7761353633376	41.252	0.19363	41.021	40.964	41.157	-0.23029					7	4	2	0	0	0	0.027866	1	3621	3621		25.45	14.585	1	40847			63222	38158	44506	44569	68462	68462					0.08794679139748496
QLVGNSLRDLW	11	Unmodified	_QLVGNSLRDLW_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.2365417480469	3	434.238455	1299.69353	-0.035916	-1.5596E-05	-2.6663	-0.0011578	-2.7022	-0.0011734	434.23766615474057	72.793	1.5278	72.516	72.197	73.724	-0.2769					74	36	4	0	0	0	1.0471	1	8549	8549		25.892	0.76573	1	664640	+		63223	27888	44507	44570	68463	68463					0.05567562346118393
QLVIPPEV	8	Unmodified	_QLVIPPEV_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.7639465332031	2	447.768386	893.522219	-0.53305	-0.00023868	-0.93044	-0.00041662	-1.4635	-0.00065531	447.76722154044324	30.866	0.70814	30.688	30.283	30.991	-0.17818					31	16	3	0	0	0	0.027866	1	1955	1955		19.36	11.67	1	134960			63224	10782	44508	44571	68464	68464					0.07119857045609024
QLVIPPEV	8	Unmodified	_QLVIPPEV_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	447.768386	893.522219	-0.89289	-0.00039981	-1.8464	-0.00082677	-2.7393	-0.0012266	447.7673810630654	30.83	0.5388	30.83	30.55	31.089	0	0.11156	0.00045958	NaN	19.36	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117080			63225	10782	44508	44571							0.07119857045609024
QLVIPPEV	8	Unmodified	_QLVIPPEV_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	447.768386	893.522219	-0.21127	-9.4599E-05	-2.9273	-0.0013108	-3.1386	-0.0014054	447.76694114070165	30.767	0.67301	30.779	30.541	31.214	0.011797	0.060976	-0.00050843	NaN	19.36	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80616			63226	10782	44508	44571							0.07119857045609024
QLVIPPEV	8	Unmodified	_QLVIPPEV_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	447.768386	893.522219	-0.69627	-0.00031177	-1.9476	-0.00087205	-2.6438	-0.0011838	447.7672662940395	30.422	0.57939	30.496	30.17	30.75	0.074316	-0.22213	0.00036901	NaN	19.36	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116360			63227	10782	44508	44571							0.07119857045609024
QLVIPPEV	8	Unmodified	_QLVIPPEV_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	447.768386	893.522219	-0.28369	-0.00012703	-0.95957	-0.00042966	-1.2433	-0.00055669	447.76710360352195	30.99	0.54465	30.749	30.41	30.954	-0.24109	0.030903	0.0012538	NaN	19.36	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98790			63228	10782	44508	44571							0.07119857045609024
QLVIPPEV	8	Unmodified	_QLVIPPEV_					0	0	0		ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF	ENSG00000241484|ENST00000356099|ARHGAP8	ENSG00000241484|ENST00000356099|ARHGAP8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	447.768386	893.522219	-0.10144	-4.5422E-05	-3.2718	-0.001465	-3.3733	-0.0015104	447.7667835827353	30.919	0.53815	30.767	30.468	31.006	-0.15231	0.048869	-0.00081692	NaN	19.36	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127080			63229	10782	44508	44571							0.07119857045609024
QLVIVINIY	9	Unmodified	_QLVIVINIY_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.263671875	2	537.831517	1073.64848	-1.0998	-0.0005915	0.10891	5.8577E-05	-0.99088	-0.00053293	537.8316354901978	60.42	0.55935	60.244	60.076	60.635	-0.1761					18	13	2	0	0	0	0.024354	1	6739	6739		47.916	3.7988	1	198960			63230	7478	44509	44572	68465	68465					0.11460363550872898
QLVKIRQV	8	Unmodified	_QLVKIRQV_					0	0	0			REV__CON__P02672	REV__CON__P02672	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7744140625	2	492.321651	982.62875	0.10512	5.1752E-05	-0.70038	-0.00034481	-0.59526	-0.00029306	492.32131225949416	36.551	0.67147	36.551	36.334	37.005	0					39	17	3	0	0	0	0.027866	1	2961	2961		57.811	0	1	358130	+	+	63231	19540	44510	44573	68466	68466					0.136740323308004
QLVKIRQV	8	Unmodified	_QLVKIRQV_					0	0	0			REV__CON__P02672	REV__CON__P02672	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.321651	982.62875	-0.50273	-0.00024751	0.65863	0.00032426	0.1559	7.6751E-05	492.32177780396074	36.602	0.74046	36.397	36.021	36.762	-0.20518	-0.075292	0.00080082	NaN	57.811	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378910	+	+	63232	19540	44510	44573							0.136740323308004
QLVKIRQV	8	Unmodified	_QLVKIRQV_					0	0	0			REV__CON__P02672	REV__CON__P02672	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.321651	982.62875	0.066264	3.2623E-05	-0.13813	-6.8004E-05	-0.071865	-3.5381E-05	492.3215089028505	36.591	0.74823	36.375	35.981	36.729	-0.21661	-0.097843	1.6299E-05	NaN	57.811	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431430	+	+	63233	19540	44510	44573							0.136740323308004
QLVKKLAK	8	Unmodified	_QLVKKLAK_					0	0	0		ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.7568359375	2	464.32112	926.627687	0.19371	8.9943E-05	-0.50401	-0.00023402	-0.3103	-0.00014408	464.32082761985373	20.771	0.24351	20.603	20.444	20.688	-0.16774					6	4	2	0	0	0	0.027866	1	584	584		18.324	5.3652	1	14340			63234	6597	44511	44574	68467	68467					0.16143817961881268
QLVKLLVH	8	Unmodified	_QLVKLLVH_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.3006591796875	2	475.313295	948.612037	1.2039	0.00057225	0.21184	0.00010069	1.4158	0.00067294	475.3134997780642	39.591	0.37605	39.591	39.357	39.733	0					16	10	2	0	0	0	0.027866	1	3441	3441		20.482	0	1	65922	+		63235	27559	44512	44575	68468	68468					0.1356753144485765
QLVKVPISLS	10	Unmodified	_QLVKVPISLS_					0	0	0		ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3193969726562	2	542.342249	1082.66995	-1.1041	-0.0005988	0.64513	0.00034988	-0.45896	-0.00024891	542.3426020092022	59.688	0.4773	59.774	59.579	60.056	0.085682					20	12	2	0	0	0	0.03519	1	6744	6744		37.812	0	1	117330			63236	4173	44513	44576	68469	68469					0.1319174857960661
QLVLWESLCL	10	Unmodified	_QLVLWESLCL_					0	0	0			REV__ENST00000485778.1_1_1:161642751-161643868:+|nuORF	REV__ENST00000485778.1_1_1:161642751-161643868:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5706787109375	3	401.886253	1202.63693	0.49377	0.00019844	0.52629	0.00021151	1.0201	0.00040995	402.22057365115165	19.966	0.29619	19.742	19.533	19.829	-0.22344					8	5	2	0	0	0	0.03519	1	461	461		27.047	6.2102	1	14813	+		63237	33569	44514	44577	68470	68470					0.043717984652403175
QLVNLQKTL	9	Unmodified	_QLVNLQKTL_					0	0	0		nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8077392578125	2	528.824224	1055.63389	0.16601	8.7788E-05	0.14071	7.4412E-05	0.30672	0.0001622	528.8241696171	71.995	0.51877	71.707	71.464	71.983	-0.28857					24	13	2	0	0	0	0.024447	1	8693	8693		25.574	9.9322	1	245750			63238	4549	44515	44578	68471	68471					0.10830291402771763
QLVNLTCLV	9	Carbamidomethyl (C)	_QLVNLTC(Carbamidomethyl (C))LV_	QLVNLTC(1)LV		QLVNLTC(82)LV		0	1	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3229370117188	2	530.296985	1058.57942	-0.22817	-0.000121	-1.6723	-0.00088681	-1.9005	-0.0010078	530.2952258224443	36.594	0.5215	36.388	36.164	36.685	-0.20518					31	12	3	0	0	0	0.023454	1	2886	2886		82.241	20.133	1	205470			63239	1878	44516	44579	68472	68472	24				0.052469562596797914
QLVNLTCLV	9	Carbamidomethyl (C)	_QLVNLTC(Carbamidomethyl (C))LV_					0	1	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.296985	1058.57942	-0.70944	-0.00037621	-7.1963	-0.0038162	-7.9057	-0.0041924	530.2932815810951	36.672	0.41534	36.608	36.294	36.709	-0.063385	0.16921	-0.0025353	NaN	82.241	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87466			63240	1878	44516	44579			24				0.052469562596797914
QLVQYLFDI	9	Unmodified	_QLVQYLFDI_					0	0	0			REV__ENSG00000233608|ENST00000612363|TWIST2;REV__ENSG00000122691|ENST00000242261|TWIST1	REV__ENSG00000122691|ENST00000242261|TWIST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2779541015625	2	569.810782	1137.60701	0.19076	0.0001087	-0.99127	-0.00056484	-0.8005	-0.00045614	569.8101878266592	79.634	0.62885	79.483	79.195	79.823	-0.15051					36	14	3	0	0	0	0.024367	1	9530	9530		52.937	4.9772	1	468960	+		63241	28909;22659	44517	44580	68473	68473					0.04371182791578576
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.8212890625	2	542.821681	1083.62881	-0.41196	-0.00022362	0.16267	8.8303E-05	-0.24929	-0.00013532	542.8216931249349	68.458	0.85934	68.477	68.158	69.017	0.018913					46	22	3	0	0	0	0.077175	1	8133	8133		118.74	22.553	1	2802900			63242	2971	44518	44581	68474	68474					0.09033987540146882
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.821681	1083.62881	-0.6015	-0.00032651	0.092786	5.0366E-05	-0.50872	-0.00027614	542.8216931386753	68.325	0.95038	68.325	67.987	68.938	0	-0.050408	-6.0631E-05	NaN	118.74	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2862700			63243	2971	44518	44581							0.09033987540146882
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.821681	1083.62881	-0.43857	-0.00023806	0.10042	5.451E-05	-0.33815	-0.00018355	542.8216728409343	68.713	0.95806	68.421	68.052	69.01	-0.29267	0.045374	-5.2344E-05	NaN	118.74	51	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2342100			63244	2971	44518	44581							0.09033987540146882
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.821681	1083.62881	-1.0449	-0.0005672	1.3328	0.00072349	0.28793	0.00015629	542.8224810672673	68.624	0.89806	68.362	68.103	69.001	-0.26166	-0.013033	0.0012856	NaN	118.74	47	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100500			63245	2971	44518	44581							0.09033987540146882
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.821681	1083.62881	0.12687	6.8867E-05	-0.021766	-1.1815E-05	0.1051	5.7052E-05	542.8217493870111	68.587	0.84789	68.344	68.11	68.958	-0.24278	-0.031077	-0.00018499	NaN	118.74	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023500			63246	2971	44518	44581							0.09033987540146882
QLVRDLLEV	9	Unmodified	_QLVRDLLEV_					0	0	0		ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	ENSG00000109320|ENST00000226574|NFKB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.821681	1083.62881	-0.35495	-0.00019267	0.2852	0.00015481	-0.069749	-3.7861E-05	542.8219586882043	68.554	0.85109	68.323	68.077	68.929	-0.23048	-0.052191	0.00014826	NaN	118.74	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988090			63247	2971	44518	44581							0.09033987540146882
QLVRDQLPQ	9	Unmodified	_QLVRDQLPQ_					0	0	0			REV__nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3	REV__nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3370361328125	2	548.809105	1095.60366	-0.24334	-0.00013355	3.343	0.0018347	3.0996	0.0017011	548.8109009227663	68.031	0.61452	68.031	67.792	68.407	0					37	15	3	0	0	0	0.024313	1	8170	8170		60.118	8.9256	1	479400	+		63248	28112	44519	44582	68475	68475					0.059679327375761204
QLVRILSN	8	Unmodified	_QLVRILSN_					0	0	0			REV__ENSG00000184014|ENST00000328194|DENND5A	REV__ENSG00000184014|ENST00000328194|DENND5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.7772521972656	2	471.790184	941.565815	-0.2989	-0.00014102	0.91059	0.00042961	0.61169	0.00028859	471.79013752418615	29.131	0.68759	28.959	28.638	29.325	-0.17258					19	15	2	0	0	0	0.027866	1	1723	1723		24.203	0	1	355610	+		63249	27631	44520	44583	68476	68476					0.09269466542764349
QLVTALLLR	9	Unmodified	_QLVTALLLR_					0	0	0			REV__ENST00000331835.9_2_1:87346375-87379803:-|nuORF	REV__ENST00000331835.9_2_1:87346375-87379803:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7844848632812	2	513.837134	1025.65972	0.037898	1.9474E-05	-0.32623	-0.00016763	-0.28833	-0.00014815	513.8369807141784	73.17	0.59864	72.899	72.678	73.277	-0.27126					22	14	2	0	0	0	0.024405	1	8915	8915		35.618	8.9254	1	67806	+		63250	27561	44521	44584	68477	68477					0.14791185645026417
QLVTCWPAG	9	Unmodified	_QLVTCWPAG_					0	0	0			REV__DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	REV__DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.743896484375	2	487.741845	973.469137	0.085933	4.1913E-05	3.5799	0.001746	3.6658	0.001788	487.7434741509761	29.624	0.92389	29.475	29.044	29.967	-0.14952					61	21	4	0	0	0	0.30449	1	1811	1811		75.043	18.322	1	2003500	+		63251	19721	44522	44585	68478	68478					-0.01865844008705153
QLVVDPLCAVL	11	Unmodified	_QLVVDPLCAVL_					0	0	0			REV__ENSG00000163755|ENST00000296051|HPS3	REV__ENSG00000163755|ENST00000296051|HPS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	585.3119506835938	2	585.333567	1168.65258	-1.7424	-0.0010199	-2.5174	-0.0014735	-4.2598	-0.0024934	585.3322379232237	50.087	0.42903	50.087	49.878	50.307	0					13	12	2	0	0	0	0.024768	1	5197	5197		31.53	4.8369	1	148770	+		63252	25630	44523	44586	68479	68479					0.07500084982279986
QLVWGSGVP	9	Unmodified	_QLVWGSGVP_					0	0	0			REV__ENST00000478046.5_1_19:46895966-46896056:+|nuORF	REV__ENST00000478046.5_1_19:46895966-46896056:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7531433105469	2	471.75581	941.497067	-0.68902	-0.00032505	-2.0841	-0.0009832	-2.7732	-0.0013083	471.7549833355498	35.738	0.19408	35.696	35.568	35.763	-0.042454					6	4	2	0	0	0	0.024405	1	2758	2758		53.351	35.986	1	23585	+		63253	33351	44524	44587	68480	68480					0.023978022430469537
QLVWHKQAP	9	Unmodified	_QLVWHKQAP_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8240966796875	2	553.808908	1105.60326	0.20244	0.00011212	-2.3379	-0.0012947	-2.1354	-0.0011826	553.8075581252825	61.164	0.45694	61.164	60.996	61.453	0					29	11	4	0	0	0	0.024535	1	7073	7073		18.324	0	1	240060	+		63254	31474	44525	44588	68481	68481					0.054685578083763176
QLWDSLMP	8	Unmodified	_QLWDSLMP_					0	0	0			REV__nc|ENSG00000162729|Q969P0-2|IGSF8	REV__nc|ENSG00000162729|Q969P0-2|IGSF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3156433105469	2	495.241678	988.468803	-0.80647	-0.0003994	4.2386	0.0020991	3.4321	0.0016997	495.2436816342647	80.991	0.75758	81.015	80.735	81.493	0.023911					45	18	4	0	0	0	0.027866	1	9985	9985		57.811	2.3071	1	801300	+		63255	36846	44526	44589	68482	68482					-0.025892637285551245
QLWLLIDD	8	Unmodified	_QLWLLIDD_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.310546875	2	508.276575	1014.5386	0.009144	4.6477E-06	-2.8951	-0.0014715	-2.8859	-0.0014668	508.2749034368615	31.803	1.0765	31.566	31.262	32.339	-0.23666					58	25	4	0	0	0	0.027866	1	2158	2158		60.972	4.2509	1	990090	+		63256	24824	44527	44590	68483	68483					0.03190938211707817
QLWLPAGLQ	9	Unmodified	_QLWLPAGLQ_					0	0	0		ENST00000375943.6_1_1:15769060-15773263:+|nuORF	ENST00000375943.6_1_1:15769060-15773263:+|nuORF	ENST00000375943.6_1_1:15769060-15773263:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.7501220703125	2	513.292559	1024.57057	-0.33589	-0.00017241	-3.7119	-0.0019053	-4.0478	-0.0020777	513.2904569734051	41.237	0.58124	41.101	40.791	41.372	-0.13553					26	13	3	0	0	0	0.024523	1	3630	3630		29.15	4.6304	1	268900			63257	13173	44528	44591	68484	68484					0.05926350685513171
QLWNKPLV	8	Unmodified	_QLWNKPLV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000554699.1_1_14:20919446-20922842:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.2919006347656	2	499.295102	996.575651	-0.78868	-0.00039378	-3.0987	-0.0015472	-3.8874	-0.0019409	499.29348223315935	47.412	1.3318	47.471	47.214	48.546	0.059097					67	38	4	0	0	0	0.78609	1	4712	4712		60.294	7.3573	1	5181800			63258	1979	44529	44592	68485	68485					0.07722654548126684
QLWPSLRA	8	Unmodified	_QLWPSLRA_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2880859375	2	485.777077	969.5396	-0.71573	-0.00034769	-1.9678	-0.00095592	-2.6836	-0.0013036	485.77575019851	21.878	0.28857	21.878	21.771	22.06	0					7	5	2	0	0	0	0.027866	1	717	717		12.959	0	1	49900	+		63259	26688	44530	44593	68486	68486					0.053611973712691
QLWPSLRA	8	Unmodified	_QLWPSLRA_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.777077	969.5396	-0.44241	-0.00021491	-1.7594	-0.00085467	-2.2018	-0.0010696	485.7759374315814	21.99	0.24174	21.915	21.793	22.035	-0.075296	0.020998	-0.00023199	NaN	19.36	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73955	+		63260	26688	44530	44593							0.053611973712691
QLWPSLRA	8	Unmodified	_QLWPSLRA_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.777077	969.5396	-1.232	-0.0005985	-1.197	-0.00058149	-2.4291	-0.00118	485.7763361352804	21.816	0.29535	21.888	21.732	22.028	0.071487	-0.0058031	0.00031438	NaN	19.36	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67309	+		63261	26688	44530	44593							0.053611973712691
QLWQELRAEIW	11	Unmodified	_QLWQELRAEIW_					0	0	0		ENST00000528911.5_1_19:17516975-17531198:+|nuORF	ENST00000528911.5_1_19:17516975-17531198:+|nuORF	ENST00000528911.5_1_19:17516975-17531198:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.201416015625	3	491.261259	1470.76195	-0.30662	-0.00015063	-2.7381	-0.0013451	-3.0447	-0.0014958	491.2599451838319	42.072	1.0011	41.841	41.311	42.312	-0.23186					37	26	2	0	0	0	0.024809	1	3801	3801		28.577	12.047	1	155980			63262	16195	44531	44594	68487	68487					0.04539806925981793
QLWQHHYY	8	Unmodified	_QLWQHHYY_					0	0	0			REV__ENST00000305901.6_1_15:53049335-53049596:-|nuORF	REV__ENST00000305901.6_1_15:53049335-53049596:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.330322265625	2	587.775065	1173.53558	-1.1985	-0.00070447	-3.4841	-0.0020479	-4.6827	-0.0027524	587.7728589006829	42	0.49597	41.769	41.583	42.079	-0.23186					25	13	3	0	0	0	0.027866	1	3715	3715		20.482	2.2197	1	320600	+		63263	30117	44532	44595	68488	68488					-0.04424892122460733
QLWRCSLP	8	Unmodified	_QLWRCSLP_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2799987792969	2	501.763112	1001.51167	-0.71101	-0.00035676	3.0781	0.0015445	2.367	0.0011877	501.76462287781874	34.224	0.75804	34.274	33.965	34.723	0.050255					28	18	2	0	0	0	0.027866	1	2522	2522		25.45	0	1	554310	+		63264	21300	44533	44596	68489	68489					0.010975511195283616
QLWVKQQD	8	Unmodified	_QLWVKQQD_					0	0	0			REV__E2F5|p.L152V|1|0.12|ENSG00000133740|chr8:85203203-85203203|T/G|missense_variant	REV__E2F5|p.L152V|1|0.12|ENSG00000133740|chr8:85203203-85203203|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3031616210938	2	522.777274	1043.53999	-0.1009	-5.2747E-05	0.10287	5.3778E-05	0.0019716	1.0307E-06	522.7769272751004	29.467	1.0985	29.318	28.869	29.967	-0.14952					44	25	2	0	0	0	0.027866	1	1867	1867		44.117	0	1	693500	+		63265	19727	44534	44597	68490	68490					0.019965723004588654
QLWVTKDPLD	10	Unmodified	_QLWVTKDPLD_					0	0	0			REV__ENST00000297720.9_1_8:38265800-38265947:+|nuORF	REV__ENST00000297720.9_1_8:38265800-38265947:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	607.7876586914062	2	607.824421	1213.63429	-0.40313	-0.00024503	-0.92582	-0.00056274	-1.329	-0.00080777	607.8240826934265	53.38	0.22395	53.19	53.133	53.357	-0.18982					8	5	2	0	0	0	0.03519	1	5607	5607		39.253	11.171	1	193950	+		63266	30014	44535	44598	68491	68491					0.036016663319287545
QLYCCFQTK	9	2 Carbamidomethyl (C)	_QLYC(Carbamidomethyl (C))C(Carbamidomethyl (C))FQTK_	QLYC(1)C(1)FQTK		QLYC(53)C(53)FQTK		0	2	0		ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315673828125	3	416.523098	1246.54746	0.13295	5.5375E-05	1.871	0.0007793	2.0039	0.00083467	416.52378861526347	21.315	0.43476	21.138	20.774	21.209	-0.17721					13	8	2	0	0	0	0.024288	1	623	623		52.937	12.159	1	26596			63267	8116	44536	44599	68492	68492	97;98				-0.06594779485772051
QLYCCFQTK	9	2 Carbamidomethyl (C)	_QLYC(Carbamidomethyl (C))C(Carbamidomethyl (C))FQTK_	QLYC(1)C(1)FQTK		QLYC(56)C(56)FQTK		0	2	0		ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	ENSG00000171132|ENST00000306156|PRKCE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2314758300781	3	416.523098	1246.54746	0.070815	2.9496E-05	1.639	0.00068268	1.7098	0.00071218	416.8584832855853	21.539	0.68221	21.348	20.833	21.516	-0.19072					15	13	2	0	0	0	0.023473	1	664	664		56.434	26.116	1	20971			63268	8116	44536	44599	68493	68493	97;98				-0.06594779485772051
QLYDEMIFGL	10	Unmodified	_QLYDEMIFGL_					0	0	0			REV__ENST00000450884.5_1_1:150981096-150997089:+|nuORF	REV__ENST00000450884.5_1_1:150981096-150997089:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	615.2833251953125	2	614.799557	1227.58456	-1.803	-0.0011085	-4.0838	-0.0025107	-5.8868	-0.0036192	614.7968870472097	55.794	0.88624	55.638	54.826	55.713	-0.15655					28	24	2	0	0	0	0.03519	1	5891	5891		27.882	0	1	169170	+		63269	31076	44537	44600	68494	68494					-0.020127846683635653
QLYFMLSV	8	Unmodified	_QLYFMLSV_					0	0	0		ENST00000220763.9_1_8:98155435-98155573:+|nuORF	ENST00000220763.9_1_8:98155435-98155573:+|nuORF	ENST00000220763.9_1_8:98155435-98155573:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.74560546875	2	500.762246	999.50994	-0.28828	-0.00014436	0.12878	6.4487E-05	-0.1595	-7.9874E-05	500.76305309935003	53.039	0.1512	52.849	52.754	52.905	-0.18982					6	3	2	0	0	0	0.027866	1	5524	5524		94.006	17.232	1	51774			63270	11179	44538	44601	68495	68495					0.01016497310934028
QLYKIDPSTL	10	Unmodified	_QLYKIDPSTL_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3270263671875	2	589.326796	1176.63904	-0.75504	-0.00044497	1.9227	0.0011331	1.1677	0.00068816	589.3278263228501	49.996	0.82357	49.716	49.397	50.221	-0.27977					61	21	4	0	0	0	1.0447	1	5058	5058		40.058	1.3046	1	2644400			63271	5942	44539	44602	68496	68496					0.0577855047470166
QLYLHRQW	8	Unmodified	_QLYLHRQW_					0	0	0		nc|ENSG00000187048|Q02928-2|CYP4A11;ENSG00000187048|ENST00000310638|CYP4A11;nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000162365|ENST00000371891|CYP4A22	nc|ENSG00000187048|Q02928-2|CYP4A11	nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.3050537109375	2	572.306532	1142.59851	-0.48405	-0.00027703	2.7365	0.0015661	2.2524	0.0012891	572.3078343436534	105.18	1.775	105.18	104.07	105.85	0					75	49	3	0	0	0	1.0133	1	13544	13544		35.201	1.0282	1	467390			63272	9604	44540	44603	68497	68497					0.03291673665603412
QLYPAAPTP	9	Unmodified	_QLYPAAPTP_					0	0	0		ENSG00000283526|ENST00000636672|PRRT1B	ENSG00000283526|ENST00000636672|PRRT1B	ENSG00000283526|ENST00000636672|PRRT1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7785949707031	2	479.255643	956.496732	0.2156	0.00010333	-4.4672	-0.0021409	-4.2516	-0.0020376	479.2534426883827	46.952	1.8781	46.799	45.886	47.764	-0.15301					101	52	4	0	0	0	0.024436	1	4670	4670		23.042	4.7181	1	3892700			63273	11088	44541	44604	68498	68498					0.01674382523174245
QLYSVDVTL	9	Unmodified	_QLYSVDVTL_					0	0	0		nc|ENSG00000204713|P14373-2|TRIM27;ENSG00000204713|ENST00000377199|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.279296875	2	519.279315	1036.54408	-0.19737	-0.00010249	-0.0058587	-3.0423E-06	-0.20323	-0.00010553	519.2791647040556	77.321	1.4085	77.321	76.955	78.363	0					64	31	5	0	0	0	0.016758	2	9546	9546;9561		153.04	44.948	1	2843300			63274	10374	44542	44605	68499;68500	68499					0.027266170035318282
QLYSVDVTL	9	Unmodified	_QLYSVDVTL_					0	0	0		nc|ENSG00000204713|P14373-2|TRIM27;ENSG00000204713|ENST00000377199|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.2794189453125	2	519.279315	1036.54408	0.045417	2.3584E-05	-0.38294	-0.00019885	-0.33752	-0.00017527	519.2789493822531	77.532	1.2839	77.321	76.995	78.279	-0.21087					57	29	4	0	0	0	0.016758	2	9541	9541;9552		153.04	44.948	1	3198300			63275	10374	44542	44605	68501;68502	68501					0.027266170035318282
QLYSVDVTL	9	Unmodified	_QLYSVDVTL_					0	0	0		nc|ENSG00000204713|P14373-2|TRIM27;ENSG00000204713|ENST00000377199|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.279052734375	2	519.279315	1036.54408	-0.44817	-0.00023273	0.078549	4.0789E-05	-0.36962	-0.00019194	519.2792243539615	77.337	1.3743	77.35	77.021	78.395	0.013504					65	32	4	0	0	0	0.014034	3	9470	9470;9480;9493		166.68	42.084	1	3230700			63276	10374	44542	44605	68503;68504;68505	68503					0.027266170035318282
QLYSVDVTL	9	Unmodified	_QLYSVDVTL_					0	0	0		nc|ENSG00000204713|P14373-2|TRIM27;ENSG00000204713|ENST00000377199|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2787475585938	2	519.279315	1036.54408	-0.16983	-8.819E-05	0.33173	0.00017226	0.1619	8.4073E-05	519.2793269530661	77.538	0.93553	77.376	77.059	77.994	-0.16196					38	21	3	0	0	0	0.6238	1	9208	9208		51.193	1.7511	1	1309900			63277	10374	44542	44605	68506	68506					0.027266170035318282
QLYSVDVTL	9	Unmodified	_QLYSVDVTL_					0	0	0		nc|ENSG00000204713|P14373-2|TRIM27;ENSG00000204713|ENST00000377199|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.279315	1036.54408	-0.085274	-4.4281E-05	0.12735	6.6131E-05	0.042077	2.185E-05	519.2791933168662	77.573	1.0597	77.311	77.06	78.119	-0.26202	-0.034537	0.00026945	NaN	166.68	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	624840			63278	10374	44542	44605							0.027266170035318282
QLYSVDVTL	9	Unmodified	_QLYSVDVTL_					0	0	0		nc|ENSG00000204713|P14373-2|TRIM27;ENSG00000204713|ENST00000377199|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	nc|ENSG00000204713|P14373-2|TRIM27	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.279315	1036.54408	1.0914	0.00056676	-1.0736	-0.00055752	0.017786	9.2358E-06	519.2785619641148	77.637	1.0881	77.395	77.077	78.165	-0.24232	0.049038	-0.00097786	NaN	166.68	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	738270			63279	10374	44542	44605							0.027266170035318282
QLYTLNEHTN	10	Unmodified	_QLYTLNEHTN_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC;REV__ENSG00000261150|ENST00000615648|EPPK1	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5633544921875	3	411.535048	1231.58332	-0.15321	-6.3051E-05	-0.069603	-2.8644E-05	-0.22281	-9.1695E-05	411.5349347159883	32.544	0.56981	32.386	32.035	32.605	-0.15772					23	13	2	0	0	0	0.03519	1	2266	2266		22.562	0	1	272360	+		63280	27175;29110	44543	44606	68507	68507					-0.023212827129100333
QLYVKIVSV	9	Unmodified	_QLYVKIVSV_					0	0	0			REV__FRMPD1|p.V459I|1|0.21|ENSG00000070601|chr9:37735708-37735708|G/A|missense_variant	REV__FRMPD1|p.V459I|1|0.21|ENSG00000070601|chr9:37735708-37735708|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2515869140625	2	524.823692	1047.63283	-0.1338	-7.0222E-05	-0.37359	-0.00019607	-0.50739	-0.00026629	524.8233383474155	53.568	0.5388	53.371	53.049	53.588	-0.19739					31	14	3	0	0	0	0.024447	1	5639	5639		25.574	10.91	1	547760	+		63281	36049	44544	44607	68508	68508					0.11092077033868009
QMAEEHVPPP	10	Unmodified	_QMAEEHVPPP_					0	0	0		ENST00000398073.6_1_12:58215142-58215220:-|nuORF	ENST00000398073.6_1_12:58215142-58215220:-|nuORF	ENST00000398073.6_1_12:58215142-58215220:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3299560546875	2	567.766049	1133.51754	-0.25684	-0.00014583	1.1491	0.00065239	0.89221	0.00050657	567.7662770142573	88.159	0.11791	87.988	87.931	88.049	-0.17054					4	2	2	0	0	0	0.03519	1	10738	10738		25.574	1.3713	1	27347			63282	13614	44545	44608	68509	68509					-0.04387395159460539
QMDKELGYL	9	Unmodified	_QMDKELGYL_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.7723999023438	2	548.7708	1095.52705	-0.4218	-0.00023147	4.4822	0.0024597	4.0604	0.0022282	548.7730867836566	35.642	1.004	35.456	35.1	36.104	-0.18675					56	27	4	0	0	0	0.70156	1	2705	2705		45.972	3.4978	1	2264500	+		63283	29019	44546	44609	68510	68510					-0.016896268739174047
QMDLDLLVK	9	Unmodified	_QMDLDLLVK_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7972412109375	2	537.796817	1073.57908	-0.90829	-0.00048848	2.1436	0.0011528	1.2353	0.00066436	537.7969692633176	75.927	1.498	75.682	75.339	76.837	-0.24455					123	38	5	0	0	0	0.38419	1	9348	9348		66.962	2.7547	1	12637000	+		63284	24952	44547	44610	68511	68511					0.045235365398411886
QMDSLRTNH	9	Unmodified	_QMDSLRTNH_					0	0	0		ENST00000587818.1_1_19:45668074-45681461:-|nuORF;ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENST00000587818.1_1_19:45668074-45681461:-|nuORF	ENST00000587818.1_1_19:45668074-45681461:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.30615234375	2	551.258922	1100.50329	-0.11741	-6.4723E-05	-3.5837	-0.0019756	-3.7011	-0.0020403	551.2569365568249	52.504	0.70186	52.356	52.095	52.797	-0.14723					32	17	3	0	0	0	0.024457	1	5582	5582		37.159	2.9866	1	339560			63285	812	44548	44611	68512	68512					-0.042940475877458084
QMESNGPELL	10	Unmodified	_QMESNGPELL_					0	0	0			REV__ENSG00000134262|ENST00000369569|AP4B1	REV__ENSG00000134262|ENST00000369569|AP4B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2654418945312	2	559.263339	1116.51212	-0.37858	-0.00021173	4.0115	0.0022435	3.633	0.0020318	559.2653505224057	82.87	1.5508	82.87	81.63	83.18	0					76	36	3	0	0	0	0.56936	1	10367	10367		80.455	6.1996	1	1253500	+		63286	23432	44549	44612	68513	68513					-0.041471187419119815
QMFYGTVL	8	Unmodified	_QMFYGTVL_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.80035400390625	2	479.738771	957.462989	-0.86666	-0.00041577	-3.124	-0.0014987	-3.9907	-0.0019145	479.737145421167	21.567	0.91922	21.354	21.069	21.988	-0.2128					26	18	2	0	0	0	0.027866	1	732	732		76.847	10.417	1	31411	+		63287	21802	44550	44613	68514	68514					-0.017443622402083747
QMHHALVKV	9	Unmodified	_QMHHALVKV_					0	0	0			REV__ENST00000343505.9_2_6:138754136-138754187:-|nuORF	REV__ENST00000343505.9_2_6:138754136-138754187:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8018188476562	2	531.797486	1061.58042	0.30149	0.00016033	1.3005	0.00069159	1.602	0.00085193	531.7974286986785	101.3	0.59769	101.16	100.86	101.45	-0.13157					18	12	2	0	0	0	0.024381	1	12539	12539		29.15	4.6304	1	59494	+		63288	30668	44551	44614	68515	68515					0.05209215419222346
QMKEKEYPE	9	Unmodified	_QMKEKEYPE_					0	0	0		nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.2546997070312	2	591.278989	1180.54342	-0.36188	-0.00021397	3.2813	0.0019402	2.9195	0.0017262	591.2807286171436	53.157	0.65453	52.899	52.644	53.298	-0.25838					39	16	3	0	0	0	0.024466	1	5532	5532		24.519	0	1	1314900			63289	6448	44552	44615	68516	68516					-0.03962545707827303
QMKKRCTD	8	Unmodified	_QMKKRCTD_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2973937988281	2	505.249511	1008.48447	0.82705	0.00041787	-4.1714	-0.0021076	-3.3443	-0.0016897	505.2472755062686	20.247	2.2955	20.052	19.41	21.705	-0.19577					95	46	3	0	0	0	0.027866	1	681	681		44.117	3.5442	1	268880	+		63290	22782	44553	44616	68517	68517					-0.019433004831626022
QMLEICESCIR	11	Unmodified	_QMLEICESCIR_					0	0	0		nc|ENSG00000137492|O43422-2|THAP12;ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENSG00000137492|ENST00000260045|THAP12	nc|ENSG00000137492|O43422-2|THAP12	nc|ENSG00000137492|O43422-2|THAP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.785400390625	3	442.206781	1323.59851	2.3671	0.0010468	0.93541	0.00041364	3.3025	0.0014604	442.20710910259567	18.557	0.44046	18.557	18.333	18.774	0					25	8	4	0	0	0	0.024772	1	324	324		14.694	0	1	167530			63291	5129	44554	44617	68518	68518					-0.05034198503221887
QMLGLQPAADF	11	Unmodified	_QMLGLQPAADF_					0	0	0		nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9	nc|ENSG00000150967|Q9NP78-7|ABCB9	nc|ENSG00000150967|Q9NP78-7|ABCB9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.7959594726562	2	595.797349	1189.58014	-1.1266	-0.00067121	-1.52	-0.00090558	-2.6465	-0.0015768	595.7963833398851	61.125	0.84253	60.872	60.544	61.387	-0.25373					63	20	4	0	0	0	0.93459	1	6810	6810		49.536	9.4779	1	3782800			63292	6162	44555	44618	68519	68519					-0.007062490912858266
QMLLLSMELKG	11	Oxidation (M)	_QM(Oxidation (M))LLLSMELKG_		QM(0.913)LLLSM(0.087)ELKG		QM(10)LLLSM(-10)ELKG	0	0	1			REV__ENST00000393779.2_1_3:17913403-17913661:-|nuORF	REV__ENST00000393779.2_1_3:17913403-17913661:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	639.8440551757812	2	639.843442	1277.67233	0.62354	0.00039897	-1.1642	-0.0007449	-0.54066	-0.00034594	640.3446580883069	100.07	0.55721	99.941	99.64	100.2	-0.12503					35	18	2	0	0	0	0.87596	1	12441	12441		53.089	11.662	2	1115100	+		63293	31654	44556	44619	68520	68520		883			0.044600929307307524
QMLVEFPRA	9	Unmodified	_QMLVEFPRA_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.7901000976562	2	545.789327	1089.5641	-1.0585	-0.0005777	3.1903	0.0017412	2.1318	0.0011635	545.7909166856776	21.125	0.58737	21.035	20.766	21.354	-0.090092					28	11	4	0	0	0	0.23085	1	615	615		84.916	7.5979	1	306200	+		63294	33403	44557	44620	68521	68521					0.022900894624854118
QMPADRTWTL	10	Unmodified	_QMPADRTWTL_					0	0	0			REV__ENSG00000214946|ENST00000437605|TBC1D26	REV__ENSG00000214946|ENST00000437605|TBC1D26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.7348327636719	3	406.869374	1217.58629	0.3376	0.00013736	0.4462	0.00018155	0.7838	0.0003189	406.869510381058	22.452	1.5349	22.25	21.663	23.198	-0.20198					55	32	2	0	0	0	0.03519	1	767	767		40.058	0	1	87037	+		63295	28793	44558	44621	68522	68522					-0.01379730859753181
QMPNVNINK	9	Unmodified	_QMPNVNINK_					0	0	0		ENSG00000105708|ENST00000344099|ZNF14	ENSG00000105708|ENST00000344099|ZNF14	ENSG00000105708|ENST00000344099|ZNF14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2760620117188	2	529.276583	1056.53861	-0.5739	-0.00030375	-0.29562	-0.00015647	-0.86953	-0.00046022	529.2764058304962	49.216	0.95065	49.064	48.682	49.632	-0.15276					58	25	3	0	0	0	0.35646	1	5062	5062		68.787	8.6686	1	6363000			63296	2714	44559	44622	68523	68523					0.012606149400653521
QMVERYLNK	9	Unmodified	_QMVERYLNK_					0	0	0			REV__ENSG00000223547|ENST00000439326|ZNF844;REV__ENSG00000257446|ENST00000547628|ZNF878	REV__ENSG00000223547|ENST00000439326|ZNF844	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.8087158203125	2	590.81079	1179.60703	-0.53834	-0.00031806	-2.6382	-0.0015587	-3.1765	-0.0018767	590.809136025003	59.001	1.5765	59.001	58.679	60.256	0					108	42	5	0	0	0	0.27161	1	6713	6713		79.451	2.6769	1	5641400	+		63297	28851;29090	44560	44623	68524	68524					0.02440859519924743
QMVERYLNK	9	Unmodified	_QMVERYLNK_					0	0	0			REV__ENSG00000223547|ENST00000439326|ZNF844;REV__ENSG00000257446|ENST00000547628|ZNF878	REV__ENSG00000223547|ENST00000439326|ZNF844	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.8091430664062	2	590.81079	1179.60703	0.68962	0.00040744	-3.8212	-0.0022576	-3.1315	-0.0018501	590.8084839782296	59.244	1.9501	59.057	58.311	60.261	-0.18705					108	52	4	0	0	0	0.16468	2	6722	6722;6734		96.19	5.5896	1	6331500	+		63298	28851;29090	44560	44623	68525;68526	68525					0.02440859519924743
QMVERYLNK	9	Unmodified	_QMVERYLNK_					0	0	0			REV__ENSG00000223547|ENST00000439326|ZNF844;REV__ENSG00000257446|ENST00000547628|ZNF878	REV__ENSG00000223547|ENST00000439326|ZNF844	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.809814453125	2	590.81079	1179.60703	-0.39469	-0.00023318	-2.4234	-0.0014318	-2.8181	-0.001665	590.8092472378149	59.265	1.842	59.077	58.471	60.313	-0.18795					92	46	4	0	0	0	0.17822	2	6534	6534;6545		93.195	13.483	1	9154500	+		63299	28851;29090	44560	44623	68527;68528	68527					0.02440859519924743
QMVERYLNK	9	Unmodified	_QMVERYLNK_					0	0	0			REV__ENSG00000223547|ENST00000439326|ZNF844;REV__ENSG00000257446|ENST00000547628|ZNF878	REV__ENSG00000223547|ENST00000439326|ZNF844	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	590.81079	1179.60703	0.68962	0.00040744	-3.8212	-0.0022576	-3.1315	-0.0018501	590.8084839782296	59.244	1.9501	59.057	58.311	60.261	-0.18705	0.01908	-0.00057342	NaN	96.19	108	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6331500	+		63300	28851;29090	44560	44623							0.02440859519924743
QMVHRDIY	8	Unmodified	_QMVHRDIY_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2601928710938	2	531.263476	1060.5124	0.24846	0.000132	-4.4847	-0.0023826	-4.2362	-0.0022506	531.261095852894	104.09	0.53796	103.93	103.64	104.17	-0.16791					25	13	3	0	0	0	0.94517	1	12930	12930		45.952	1.8352	1	217080	+		63301	29042	44561	44624	68529	68529					-0.015436542313864265
QMVMVDYLN	9	Unmodified	_QMVMVDYLN_					0	0	0		ENST00000477626.5_1_14:45565934-45566048:+|nuORF	ENST00000477626.5_1_14:45565934-45566048:+|nuORF	ENST00000477626.5_1_14:45565934-45566048:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7838745117188	2	556.759378	1111.5042	0.25104	0.00013977	-0.94113	-0.00052398	-0.69009	-0.00038421	556.7588094500277	69.054	0.49681	68.811	68.626	69.123	-0.24277					18	11	2	0	0	0	0.024457	1	8021	8021		29.15	14.285	1	363030			63302	15113	44562	44625	68530	68530					-0.04708969263037943
QNAASICSA	9	Unmodified	_QNAASICSA_					0	0	0		GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	GATAD2B|p.V210Cfs*15|1|0.19|ENSG00000143614|chr1:153818141-153818142|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2537841796875	2	432.697635	863.380716	-0.41937	-0.00018146	4.0094	0.0017349	3.59	0.0015534	432.7014719236867	28.948	0.46152	28.951	28.631	29.092	0.0031357					12	10	2	0	0	0	0.024323	1	1685	1685		35.618	17.294	1	33849			63303	17672	44563	44626	68531	68531					-0.05643884319169956
QNADERQP	8	Unmodified	_QNADERQP_					0	0	0			REV__ENST00000453994.6_1_X:69644893-69645286:+|nuORF	REV__ENST00000453994.6_1_X:69644893-69645286:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.30029296875	2	479.222862	956.431172	-0.30289	-0.00014515	4.0942	0.001962	3.7913	0.0018169	479.22468493156833	37.706	0.48526	37.706	37.45	37.936	0					21	13	2	0	0	0	0.027866	1	3114	3114		65.803	17.888	1	185710	+		63304	32755	44564	44627	68532	68532					-0.04878638669811153
QNADERQP	8	Unmodified	_QNADERQP_					0	0	0			REV__ENST00000453994.6_1_X:69644893-69645286:+|nuORF	REV__ENST00000453994.6_1_X:69644893-69645286:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3004455566406	2	479.222862	956.431172	-0.52668	-0.0002524	4.1594	0.0019933	3.6327	0.0017409	479.224913870066	37.603	0.66911	37.54	37.198	37.868	-0.063385					26	18	2	0	0	0	0.027866	1	3085	3085		65.803	9.0821	1	215860	+		63305	32755	44564	44627	68533	68533					-0.04878638669811153
QNAFFVVKG	9	Unmodified	_QNAFFVVKG_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7142028808594	2	505.276909	1008.53927	-0.80354	-0.00040601	2.8088	0.0014192	2.0052	0.0010132	505.27839935517443	29.724	1.7549	29.551	28.291	30.046	-0.17258					64	40	2	0	0	0	0.024427	1	1750	1750		26.693	0	1	320600	+		63306	21658	44565	44628	68534	68534					0.035337776514325014
QNAKKNGRYY	10	Unmodified	_QNAKKNGRYY_					0	0	0		SBNO1|p.D1143Y|1|0.3|ENSG00000139697|chr12:123309725-123309725|C/A|missense_variant	SBNO1|p.D1143Y|1|0.3|ENSG00000139697|chr12:123309725-123309725|C/A|missense_variant	SBNO1|p.D1143Y|1|0.3|ENSG00000139697|chr12:123309725-123309725|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.8984069824219	3	414.551033	1240.63127	0.11013	4.5653E-05	-0.45093	-0.00018693	-0.3408	-0.00014128	414.88432870555056	25.045	0.30504	25.045	24.83	25.135	0					13	6	3	0	0	0	0.03519	1	1151	1151		32.751	21.296	1	68623			63307	37854	44566	44629	68535	68535					0.020578359978117078
QNALYVRMLAE	11	Unmodified	_QNALYVRMLAE_					0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.5264892578125	3	436.564062	1306.67036	0.33627	0.0001468	1	0.00043658	1.3363	0.00058338	436.5641270308297	53.246	0.46114	52.987	52.763	53.224	-0.25838					23	11	3	0	0	0	0.024734	1	5531	5531		21.78	10.326	1	184570			63308	1447	44567	44630	68536	68536					0.029288002371458788
QNALYVRMLAE	11	Unmodified	_QNALYVRMLAE_					0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	436.564062	1306.67036	0.21224	9.2658E-05	0.12176	5.3154E-05	0.334	0.00014581	436.5642051277853	53.019	0.395	52.892	52.632	53.027	-0.12705	-0.03903	-0.00041408	NaN	21.78	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157160			63309	1447	44567	44630							0.029288002371458788
QNAPSLKAV	9	Unmodified	_QNAPSLKAV_					0	0	0			REV__nc|ENSG00000130726|Q13263-2|TRIM28	REV__nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.26690673828125	2	464.266542	926.51853	0.058634	2.7222E-05	-0.6165	-0.00028622	-0.55786	-0.000259	464.2664997711173	42.874	1.9695	42.735	41.746	43.715	-0.13929					102	55	5	0	0	0	0.80003	1	3947	3947		39.253	2.0937	1	3686000	+		63310	23144	44568	44631	68537	68537					0.05233187271744555
QNAYMELGGL	10	Unmodified	_QNAYMELGGL_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	ENSG00000018625|ENST00000361216|ATP1A2	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.826416015625	2	548.260599	1094.50665	-0.60157	-0.00032982	3.5673	0.0019558	2.9657	0.001626	548.2631522211672	95.027	0.43514	95.031	94.748	95.183	0.0041199					14	9	2	0	0	0	0.03519	1	12034	12034		37.812	1.3648	1	93237			63311	943	44569	44632	68538	68538					-0.036827975337246244
QNCTMVFSSY	10	Carbamidomethyl (C),Oxidation (M)	_QNC(Carbamidomethyl (C))TM(Oxidation (M))VFSSY_	QNC(1)TMVFSSY	QNCTM(1)VFSSY	QNC(88)TMVFSSY	QNCTM(88)VFSSY	0	1	1		ENST00000573209.1_1_17:7350776-7358776:+|nuORF;nc|ENSG00000170175|P11230-2|CHRNB1;CHRNB1|p.M465Tfs*3|1|0.03|ENSG00000170175|chr17:7456608-7456609|-/AA|frameshift_variant;ENSG00000170175|ENST00000306071|CHRNB1	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.7520751953125	2	626.752281	1251.49001	-0.9656	-0.00060519	0.094131	5.8997E-05	-0.87147	-0.00054619	626.7522525151522	40.486	0.68837	40.261	40.004	40.693	-0.225					49	18	5	0	0	0	0.50517	1	3498	3498		87.696	10.379	1	1970900			63312	17068	44570	44633	68539	68539	225	546			-0.12567666481982087
QNCTMVFSSY	10	Carbamidomethyl (C),Oxidation (M)	_QNC(Carbamidomethyl (C))TM(Oxidation (M))VFSSY_					0	1	1		ENST00000573209.1_1_17:7350776-7358776:+|nuORF;nc|ENSG00000170175|P11230-2|CHRNB1;CHRNB1|p.M465Tfs*3|1|0.03|ENSG00000170175|chr17:7456608-7456609|-/AA|frameshift_variant;ENSG00000170175|ENST00000306071|CHRNB1	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	626.752281	1251.49001	-0.67878	-0.00042543	-0.03748	-2.3491E-05	-0.71626	-0.00044892	626.752144869263	40.337	0.68872	40.187	39.933	40.621	-0.1497	-0.043741	-0.00040191	NaN	87.696	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2390000			63313	17068	44570	44633			225	546			-0.12567666481982087
QNDIKKIV	8	Unmodified	_QNDIKKIV_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7743835449219	2	479.290017	956.565481	-0.51756	-0.00024806	0.47915	0.00022965	-0.03841	-1.841E-05	479.29007800578364	31.097	0.70275	30.912	30.618	31.321	-0.18503					48	17	5	0	0	0	0.027866	1	2073	2073		27.882	7.8855	1	3820800			63314	10199	44571	44634	68540	68540					0.08546046822880271
QNDIMLLQL	9	Unmodified	_QNDIMLLQL_					0	0	0		ENST00000552252.1_1_14:25042845-25044048:-|nuORF;ENSG00000100448|ENST00000216336|CTSG	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7960815429688	2	544.294442	1086.57433	-0.14114	-7.6822E-05	-0.83849	-0.00045638	-0.97963	-0.00053321	544.7952835173093	55.149	1.3759	55.149	54.623	55.999	0					109	38	5	0	0	0	0.18994	1	6059	6059		90.601	0.23104	1	6359300			63315	2204	44572	44635	68541	68541					0.03450652397077647
QNDWVAVHV	9	Unmodified	_QNDWVAVHV_					0	0	0		ENSG00000120162|ENST00000262244|MOB3B	ENSG00000120162|ENST00000262244|MOB3B	ENSG00000120162|ENST00000262244|MOB3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.264892578125	2	534.267073	1066.51959	-0.59513	-0.00031796	-3.4149	-0.0018245	-4.01	-0.0021424	534.2650629518254	25.106	0.98351	24.935	24.558	25.542	-0.17078					38	22	4	0	0	0	0.42604	1	1152	1152		64.207	16.55	1	1006500			63316	3797	44573	44636	68542	68542					-0.01100598359334981
QNEARSLMP	9	Unmodified	_QNEARSLMP_					0	0	0		ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2899780273438	2	523.258391	1044.50223	-0.89266	-0.00046709	0.8283	0.00043342	-0.064362	-3.3678E-05	523.2599426932792	56.812	0.69615	56.812	56.207	56.904	0					24	19	2	0	0	0	0.024405	1	6374	6374		35.618	0	1	214950			63317	9575	44574	44637	68543	68543					-0.018242619566535723
QNEIDKIL	8	Unmodified	_QNEIDKIL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7740173339844	2	486.771657	971.528761	0.029422	1.4322E-05	4.4353	0.002159	4.4647	0.0021733	486.77369037430714	27.439	0.82988	27.283	26.974	27.804	-0.15664					49	19	3	0	0	0	0.74904	1	1494	1494		63.306	1.1989	1	1367600	+		63318	25017	44575	44638	68544	68544					0.04185750206340799
QNEIKKLTV	9	Unmodified	_QNEIKKLTV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3055419921875	2	536.821681	1071.62881	-0.81304	-0.00043646	-1.1031	-0.00059217	-1.9161	-0.0010286	536.8206146570284	48.729	0.62659	48.729	48.378	49.005	0					34	17	3	0	0	0	0.02435	1	4946	4946		34.173	0	1	412560			63319	4728	44576	44639	68545	68545					0.09585987540117458
QNEINNPK	8	Unmodified	_QNEINNPK_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2901306152344	2	478.743431	955.472308	0.2748	0.00013156	0.46254	0.00022144	0.73734	0.000353	478.74350941050443	25.451	1.0518	25.531	24.871	25.922	0.08009					42	24	3	0	0	0	0.027866	1	1206	1206		17.365	0	1	267170			63320	2112	44577	44640	68546	68546					-0.007208776303286868
QNEKIFAP	8	Unmodified	_QNEKIFAP_					0	0	0		ENSG00000155265|ENST00000370602|GOLGA7B	ENSG00000155265|ENST00000370602|GOLGA7B	ENSG00000155265|ENST00000370602|GOLGA7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.76416015625	2	473.753267	945.491981	0.59195	0.00028044	-2.1072	-0.0009983	-1.5153	-0.00071786	473.75212829705424	102.06	0.61533	102.05	101.75	102.37	-0.0054474					23	13	2	0	0	0	0.027866	1	12985	12985		63.306	0	1	235370			63321	6463	44578	44641	68547	68547					0.01705498380431436
QNESLSNLAN	10	Unmodified	_QNESLSNLAN_					0	0	0			REV__PDXDC1-ATP2A1|1|fusion;REV__ENSG00000174437|ENST00000539276|ATP2A2	REV__PDXDC1-ATP2A1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3158569335938	2	545.262185	1088.50982	-0.23006	-0.00012544	-2.8549	-0.0015567	-3.085	-0.0016821	545.7612914255016	86.102	0.34763	85.964	85.789	86.136	-0.13734					11	7	2	0	0	0	0.03519	1	10448	10448		20.837	6.7	1	31216	+		63322	28160;26861	44579	44642	68548	68548					-0.03089831155398315
QNEVNAAW	8	Unmodified	_QNEVNAAW_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2534484863281	2	466.217049	930.419545	-0.089949	-4.1936E-05	-0.23709	-0.00011053	-0.32704	-0.00015247	466.2167142599211	40.429	0.36791	40.204	39.928	40.296	-0.225					17	9	2	0	0	0	0.027866	1	3460	3460		63.306	26.147	1	437620			63323	7105	44580	44643	68549	68549					-0.04844835693154437
QNEVNAAW	8	Unmodified	_QNEVNAAW_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2538146972656	2	466.217049	930.419545	-1.222	-0.0005697	1.4254	0.00066453	0.2034	9.4828E-05	466.2175040277795	40.462	0.45689	40.232	39.851	40.308	-0.2302					19	11	2	0	0	0	0.027866	1	3447	3447		53.351	16.192	1	402980			63324	7105	44580	44643	68550	68550					-0.04844835693154437
QNFGIILCL	9	Unmodified	_QNFGIILCL_					0	0	0		ENST00000309922.6_1_3:101284860-101285061:+|nuORF	ENST00000309922.6_1_3:101284860-101285061:+|nuORF	ENST00000309922.6_1_3:101284860-101285061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.27362060546875	2	510.78097	1019.54739	0.22261	0.00011371	2.6625	0.00136	2.8851	0.0014737	510.78203314554816	90.904	0.52733	90.765	90.662	91.189	-0.13942					17	12	2	0	0	0	0.024436	1	11115	11115		30.504	5.0535	1	764740			63325	12047	44581	44644	68551	68551					0.03839588576522601
QNFHIILL	8	Unmodified	_QNFHIILL_					0	0	0		ENST00000481107.1_1_17:15927314-15927548:+|nuORF	ENST00000481107.1_1_17:15927314-15927548:+|nuORF	ENST00000481107.1_1_17:15927314-15927548:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.3212890625	2	499.295102	996.575651	-0.55767	-0.00027844	-3.6726	-0.0018337	-4.2303	-0.0021121	499.29305189745094	48.756	0.35248	48.823	48.553	48.906	0.066795					16	9	2	0	0	0	0.027866	1	4916	4916		44.531	11.038	1	255650			63326	15219	44582	44645	68552	68552					0.07722654548138053
QNFPIKAR	8	Unmodified	_QNFPIKAR_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;ENST00000465196.5_1_13:96635825-96665653:-|nuORF;ENST00000467305.1_1_13:96637506-96665674:-|nuORF	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2300109863281	2	487.282526	972.550499	-0.21021	-0.00010243	-1.2684	-0.00061809	-1.4787	-0.00072052	487.2818678595072	31.639	0.47785	31.398	31.258	31.735	-0.24109					16	11	2	0	0	0	0.027866	1	2112	2112		24.203	0	1	136900			63327	2418	44583	44646	68553	68553					0.063125997455586
QNGEDLENLD	10	Unmodified	_QNGEDLENLD_					0	0	0		ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2792358398438	2	573.749107	1145.48366	-0.26029	-0.00014934	3.3144	0.0019016	3.0541	0.0017523	573.7515693813178	77.812	0.25114	77.65	77.527	77.778	-0.16196					8	5	2	0	0	0	0.03519	1	9276	9276		18.262	0.79408	1	66266			63328	4069	44584	44647	68554	68554					-0.08326145117507622
QNGFSVKSSPN	11	Unmodified	_QNGFSVKSSPN_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.2664794921875	2	582.785827	1163.5571	-0.26952	-0.00015707	-2.0576	-0.0011992	-2.3272	-0.0013562	582.7840159434787	61.755	0.59901	61.541	61.293	61.892	-0.21375					29	14	3	0	0	0	0.024753	1	6943	6943		38.754	7.2238	1	218480			63329	6317	44585	44648	68555	68555					-0.01813551884356457
QNGRKDSLEI	10	Unmodified	_QNGRKDSLEI_					0	0	0		ENST00000560451.5_1_15:91463647-91463971:+|nuORF	ENST00000560451.5_1_15:91463647-91463971:+|nuORF	ENST00000560451.5_1_15:91463647-91463971:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	580.3084716796875	2	580.306926	1158.5993	-0.61482	-0.00035679	3.9285	0.0022798	3.3137	0.001923	580.3092329758972	64.293	1.1368	64.293	63.954	65.091	0					79	30	4	0	0	0	0.67616	1	7578	7578		68.846	4.6389	1	5739300			63330	16801	44586	44649	68556	68556					0.0263442352400034
QNGRKKRKIPK	11	Unmodified	_QNGRKKRKIPK_					0	0	0		nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.270263671875	3	451.624755	1351.85244	-0.083276	-3.761E-05	0.27825	0.00012567	0.19498	8.8056E-05	451.62462397191786	46.783	0.5497	46.834	46.474	47.024	0.051399					29	14	3	0	0	0	0.02484	1	4610	4610		12.433	0	1	234570			63331	5923	44587	44650	68557	68557					0.19058320764906966
QNGVLVRSP	9	Unmodified	_QNGVLVRSP_					0	0	0			REV__ENST00000592836.5_1_2:179400536-179402981:+|nuORF	REV__ENST00000592836.5_1_2:179400536-179402981:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2557678222656	2	485.277441	968.540328	-0.75229	-0.00036507	3.8007	0.0018444	3.0484	0.0014793	485.27903022918264	53.083	0.68576	53.178	52.943	53.629	0.095669					33	18	2	0	0	0	0.024337	1	5659	5659		49.536	27.576	1	589620	+		63332	35752	44588	44651	68558	68558					0.054799920203208785
QNHFVDEY	8	Unmodified	_QNHFVDEY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS;nc|ENSG00000174775|P01112-2|HRAS;HRAS|p.Q150Pfs*28|1|0.16|ENSG00000174775|chr11:533456-533457|-/CGGGTCTTGGCCGAGGT|frameshift_variant;ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS;ENSG00000174775|ENST00000311189|HRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2322387695312	2	526.227613	1050.44067	-0.084908	-4.4681E-05	-2.2065	-0.0011611	-2.2914	-0.0012058	526.2263750892423	50.5	0.47917	50.395	50.165	50.644	-0.10558					31	12	3	0	0	0	0.027866	1	5102	5102		65.803	12.452	1	832210			63333	10499	44589	44652	68559	68559					-0.08252870384285416
QNHFVDEY	8	Unmodified	_QNHFVDEY_					0	0	0		ENSG00000213281|ENST00000369535|NRAS;nc|ENSG00000174775|P01112-2|HRAS;HRAS|p.Q150Pfs*28|1|0.16|ENSG00000174775|chr11:533456-533457|-/CGGGTCTTGGCCGAGGT|frameshift_variant;ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000133703|P01116|KRAS;ENSG00000174775|ENST00000311189|HRAS	ENSG00000213281|ENST00000369535|NRAS	ENSG00000213281|ENST00000369535|NRAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2322998046875	2	526.227613	1050.44067	0.30807	0.00016212	-2.3251	-0.0012236	-2.0171	-0.0010614	526.2260435940925	50.584	0.55143	50.404	50.172	50.723	-0.18071					31	14	3	0	0	0	0.027866	1	5118	5118		45.952	1.4209	1	871840			63334	10499	44589	44652	68560	68560					-0.08252870384285416
QNHGLIIQT	9	Unmodified	_QNHGLIIQT_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.833984375	2	512.282723	1022.55089	-0.7645	-0.00039164	0.6693	0.00034287	-0.095196	-4.8767E-05	512.2831978791987	73.224	0.58686	73.224	72.74	73.327	0					21	14	2	0	0	0	0.024477	1	8889	8889		20.947	4.4738	1	151310	+		63335	23384	44590	44653	68561	68561					0.0405197467475773
QNHGQHGYVE	10	Unmodified	_QNHGQHGYVE_					0	0	0			REV__ENST00000448987.1_1_15:91475978-91478288:-|nuORF	REV__ENST00000448987.1_1_15:91475978-91478288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8031005859375	2	584.760143	1167.50573	-0.78146	-0.00045697	0.91731	0.0005364	0.13585	7.9437E-05	584.7606042420207	54.552	0.51365	54.307	54.073	54.586	-0.2453					21	14	2	0	0	0	0.03519	1	5802	5802		14.865	3.9993	1	241850	+		63336	32667	44591	44654	68562	68562					-0.07131875858453895
QNHPEIVFAR	10	Unmodified	_QNHPEIVFAR_					0	0	0		ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	ENSG00000132681|ENST00000368081|ATP1A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.92291259765625	3	404.215761	1209.62546	-0.94834	-0.00038333	1.6381	0.00066216	0.6898	0.00027883	404.5521801029032	26.62	0.19314	26.457	26.344	26.537	-0.16331					6	4	2	0	0	0	0.03519	1	1377	1377		23.378	4.1152	1	99074			63337	4639	44592	44655	68563	68563					0.029027374861243516
QNIAIELTK	9	Unmodified	_QNIAIELTK_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2898559570312	2	515.300581	1028.58661	-0.54273	-0.00027967	-0.83594	-0.00043076	-1.3787	-0.00071043	515.3001049086389	34.213	0.77432	34.213	33.894	34.668	0					49	19	3	0	0	0	0.024477	1	2519	2519		9.7057	4.4855	1	2322000			63338	4326	44593	44656	68564	68564					0.07346012131733914
QNIAVVGK	8	Unmodified	_QNIAVVGK_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.5675048828125	2	414.750527	827.486502	-0.53405	-0.0002215	0.6416	0.0002661	0.10754	4.4604E-05	414.75053498486085	29.014	0.47486	28.842	28.681	29.156	-0.17258					11	10	2	0	0	0	0.027866	1	1738	1738		11.511	4.3177	1	36423			63339	2823	44594	44657	68565	68565					0.06585819588622144
QNIHLHEPN	9	Unmodified	_QNIHLHEPN_					0	0	0		ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.2643432617188	2	551.275429	1100.53631	-0.56123	-0.00030939	-0.70354	-0.00038785	-1.2648	-0.00069724	551.2735091221779	61.532	0.63137	61.603	61.394	62.026	0.071129					30	16	3	0	0	0	0.02435	1	7042	7042		42.396	6.7778	1	117510			63340	8150	44595	44658	68566	68566					-0.009940974733808616
QNIKVPSVD	9	Unmodified	_QNIKVPSVD_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2883605957031	2	500.277106	998.53966	-1.279	-0.00063986	0.7667	0.00038356	-0.51231	-0.0002563	500.2774073911204	49.124	0.89013	49.198	49.022	49.912	0.074196					40	23	3	0	0	0	0.024381	1	4979	4979		21.96	6.3181	1	516350	+		63341	19842	44596	44659	68567	68567					0.04033152580609567
QNILGQPKR	9	Unmodified	_QNILGQPKR_					0	0	0		GRID1|p.E454Q|1|0.1|ENSG00000182771|chr10:85728028-85728028|C/G|missense_variant	GRID1|p.E454Q|1|0.1|ENSG00000182771|chr10:85728028-85728028|C/G|missense_variant	GRID1|p.E454Q|1|0.1|ENSG00000182771|chr10:85728028-85728028|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3116455078125	2	527.311815	1052.60908	-0.73064	-0.00038528	0.13036	6.8738E-05	-0.60029	-0.00031654	527.3117930767723	20.602	0.81742	20.497	20.178	20.995	-0.10477					38	16	4	0	0	0	0.94809	1	562	562		29.15	3.6994	1	670000			63342	17695	44597	44660	68568	68568					0.08487656320039605
QNILHWSQ	8	Unmodified	_QNILHWSQ_					0	0	0		nc|ENSG00000173239|Q5VYY2-2|LIPM;ENSG00000173239|ENST00000404743|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.3135375976562	2	513.261791	1024.50903	-0.84724	-0.00043485	-0.61452	-0.00031541	-1.4618	-0.00075026	513.2619235469473	50.225	0.52956	50.225	49.949	50.479	0					27	15	3	0	0	0	0.027866	1	5284	5284		21.96	0	1	382530			63343	8358	44598	44661	68569	68569					-0.0022458101377651474
QNIPPSLSSL	10	Unmodified	_QNIPPSLSSL_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2887573242188	2	528.290214	1054.56587	0.11363	6.0029E-05	2.753	0.0014544	2.8667	0.0015144	528.2913760804711	57.588	0.67323	57.413	56.898	57.571	-0.1749					25	17	2	0	0	0	0.03519	1	6467	6467		23.523	0	1	621000	+		63344	24464	44599	44662	68570	68570					0.04077421752117516
QNIQSKKPD	9	Unmodified	_QNIQSKKPD_					0	0	0		ENSG00000180190|ENST00000324079|TDRP;nc|ENSG00000180190|Q86YL5-2|TDRP	ENSG00000180190|ENST00000324079|TDRP	ENSG00000180190|ENST00000324079|TDRP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	529.285463	1056.55637	-0.87437	-0.00046279	-3.5486	-0.0018782	-4.423	-0.002341	529.2834541866475	51.929	0.25667	52.021	51.823	52.079	0.091938					8	6	2	0	0	0	0.024397	1	5454	5454		47.657	20.964	1	75259			63345	8963	44600	44663	68571	68571					0.030356534665770596
QNIQSKKPD	9	Unmodified	_QNIQSKKPD_					0	0	0		ENSG00000180190|ENST00000324079|TDRP;nc|ENSG00000180190|Q86YL5-2|TDRP	ENSG00000180190|ENST00000324079|TDRP	ENSG00000180190|ENST00000324079|TDRP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	529.285463	1056.55637	-1.0392	-0.00055005	3.4344	0.0018178	2.3952	0.0012677	529.2878699972591	51.582	0.62254	51.669	51.375	51.998	0.087009					33	17	3	0	0	0	0.024397	1	5454	5454		47.657	9.8458	1	430490			63346	8963	44600	44663	68572	68572					0.030356534665770596
QNIQSKKPD	9	Unmodified	_QNIQSKKPD_					0	0	0		ENSG00000180190|ENST00000324079|TDRP;nc|ENSG00000180190|Q86YL5-2|TDRP	ENSG00000180190|ENST00000324079|TDRP	ENSG00000180190|ENST00000324079|TDRP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.285463	1056.55637	-0.50598	-0.00026781	4.452	0.0023564	3.946	0.0020886	529.287609055286	51.63	0.3722	51.63	51.431	51.803	0	-0.0030391	-0.00031806	NaN	47.657	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356820			63347	8963	44600	44663							0.030356534665770596
QNIQSKKPD	9	Unmodified	_QNIQSKKPD_					0	0	0		ENSG00000180190|ENST00000324079|TDRP;nc|ENSG00000180190|Q86YL5-2|TDRP	ENSG00000180190|ENST00000324079|TDRP	ENSG00000180190|ENST00000324079|TDRP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.285463	1056.55637	-0.92141	-0.00048769	4.8203	0.0025513	3.8989	0.0020636	529.2877458999909	51.805	0.33387	51.657	51.477	51.811	-0.14735	0.023981	7.1823E-05	NaN	47.657	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515760			63348	8963	44600	44663							0.030356534665770596
QNIQSKKPD	9	Unmodified	_QNIQSKKPD_					0	0	0		ENSG00000180190|ENST00000324079|TDRP;nc|ENSG00000180190|Q86YL5-2|TDRP	ENSG00000180190|ENST00000324079|TDRP	ENSG00000180190|ENST00000324079|TDRP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.285463	1056.55637	0.13757	7.2813E-05	9.1911	0.0048647	9.3287	0.0049375	529.2915945091208	51.696	0.17809	51.577	51.504	51.682	-0.11876	-0.056463	0.0046986	NaN	47.657	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39932			63349	8963	44600	44663							0.030356534665770596
QNIRAKNKI	9	Unmodified	_QNIRAKNKI_					0	0	0			REV__KIF3A|p.E353Q|1|0.14|ENSG00000131437|chr5:132715829-132715829|C/G|missense_variant	REV__KIF3A|p.E353Q|1|0.14|ENSG00000131437|chr5:132715829-132715829|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8345947265625	2	542.832914	1083.65128	0.079798	4.3317E-05	3.3202	0.0018023	3.4	0.0018456	542.8346421508029	70.406	0.36031	70.406	70.209	70.569	0					14	8	2	0	0	0	0.72875	1	8499	8499		44.117	9.9443	1	1754100	+		63350	36183	44601	44664	68573	68573					0.11279631728416462
QNIREFIL	8	Unmodified	_QNIREFIL_					0	0	0		ENST00000357666.8_1_19:53452950-53453265:-|nuORF	ENST00000357666.8_1_19:53452950-53453265:-|nuORF	ENST00000357666.8_1_19:53452950-53453265:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2696533203125	2	516.795466	1031.57638	-0.55844	-0.0002886	3.1013	0.0016027	2.5428	0.0013141	516.7962858764121	51.775	1.6308	51.628	50.899	52.53	-0.14735					89	44	3	0	0	0	0.027866	1	5383	5383		40.573	0	1	762130			63351	12701	44602	44665	68574	68574					0.06185449197187154
QNIVGNAR	8	Unmodified	_QNIVGNAR_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.7976989746094	2	436.240858	870.467164	-0.27384	-0.00011946	0.39129	0.0001707	0.11745	5.1239E-05	436.2408953625881	21.89	0.52908	21.688	21.373	21.903	-0.20199					24	10	3	0	0	0	0.027866	1	721	721		30.504	0	1	197370			63352	985	44603	44666	68575	68575					0.026748632977046327
QNIYKVLKP	9	Unmodified	_QNIYKVLKP_					0	0	0		ENSG00000206562|ENST00000383790|METTL6	ENSG00000206562|ENST00000383790|METTL6	ENSG00000206562|ENST00000383790|METTL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.7939453125	2	551.834591	1101.65463	0.12576	6.94E-05	-1.2113	-0.00066846	-1.0856	-0.00059906	551.8338187477136	42.318	0.44752	42.318	42.087	42.534	0					18	12	2	0	0	0	0.024477	1	3914	3914		35.618	7.736	1	107870			63353	10474	44604	44667	68576	68576					0.10786881782405544
QNKETELLD	9	Unmodified	_QNKETELLD_					0	0	0		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1;PLCB1|p.A884Qfs*55|1|0.06|ENSG00000182621|chr20:8757158-8757159|-/CCACAGCCAG|frameshift_variant	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3168334960938	2	545.274761	1088.53497	-0.51392	-0.00028023	2.0317	0.0011078	1.5178	0.00082761	545.2754159277629	86.931	0.24844	86.896	86.692	86.941	-0.035355					6	5	2	0	0	0	0.024374	1	10884	10884		32.812	1.2826	1	46712			63354	9148	44605	44668	68577	68577					-0.00575776352820867
QNKFSPLPL	9	Unmodified	_QNKFSPLPL_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000163349|Q86Z02-2|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8187255859375	2	522.297842	1042.58113	-0.25981	-0.0001357	-2.3916	-0.0012491	-2.6514	-0.0013848	522.7963102286167	54.688	0.51545	54.538	54.266	54.782	-0.15036					33	14	3	0	0	0	0.024477	1	5926	5926		20.947	0	1	422250			63355	7061;1273;3041	44606	44669	68578	68578					0.06154333339964069
QNKIILFTV	9	Unmodified	_QNKIILFTV_					0	0	0		ENSG00000176040|ENST00000452346|TMPRSS7	ENSG00000176040|ENST00000452346|TMPRSS7	ENSG00000176040|ENST00000452346|TMPRSS7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3280029296875	2	538.329142	1074.64373	-0.12202	-6.5684E-05	-3.9102	-0.002105	-4.0322	-0.0021706	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	0.72875	1	12808	12808		44.117	6.3053	1	22543000			63356	8606	44607	44670	68579	68579					0.10939479408125408
QNKIKLESI	9	Unmodified	_QNKIKLESI_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.30615234375	2	536.821681	1071.62881	-0.86303	-0.00046329	-0.96701	-0.00051911	-1.83	-0.0009824	536.8208717615587	48.947	0.71193	48.795	48.329	49.041	-0.15277					42	19	3	0	0	0	0.024457	1	4984	4984		21.96	1.9631	1	446470	+		63357	21127	44608	44671	68580	68580					0.09585987540117458
QNKIMKII	8	Unmodified	_QNKIMKII_					0	0	0			REV__ENST00000366612.1_1_1:234519680-234519731:+|nuORF	REV__ENST00000366612.1_1_1:234519680-234519731:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2870178222656	2	494.304613	986.594672	-0.3473	-0.00017167	-3.1093	-0.0015369	-3.4566	-0.0017086	494.3029521275086	67.505	0.42384	67.267	66.998	67.422	-0.23814					20	9	3	0	0	0	0.027866	1	7763	7763		20.482	0	1	361220	+		63358	30979	44609	44672	68581	68581					0.10083867847538386
QNKIVNCLKD	10	Unmodified	_QNKIVNCLKD_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2;GPD2-NR4A2|1|fusion	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.805908203125	2	587.816073	1173.61759	-0.79849	-0.00046936	-2.3721	-0.0013944	-3.1706	-0.0018637	587.8146903138907	62.191	0.50709	61.934	61.706	62.213	-0.25725					21	12	2	0	0	0	0.03519	1	6980	6980		31.53	0	1	465360			63359	6333	44610	44673	68582	68582					0.03772842174316793
QNKKKADP	8	Unmodified	_QNKKKADP_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.22015380859375	2	464.764166	927.513779	0.073704	3.4255E-05	-0.08734	-4.0593E-05	-0.013636	-6.3376E-06	464.76404316333424	34.138	0.50721	34.133	33.829	34.336	-0.0045624					23	12	2	0	0	0	0.027866	1	2474	2474		29.15	0	1	1562600			63360	1685	44611	44674	68583	68583					0.047123031289856954
QNKKRVLL	8	Unmodified	_QNKKRVLL_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.8269348144531	2	499.827101	997.639649	0.38291	0.00019139	-1.1406	-0.00057008	-0.75764	-0.00037869	499.8265725967488	21.935	1.315	21.746	21.291	22.606	-0.18893					73	27	5	0	0	0	1.0239	1	742	742		33.516	1.5607	1	4886000			63361	5568	44612	44675	68584	68584					0.14073434705096588
QNKKRVLL	8	Unmodified	_QNKKRVLL_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.826904296875	2	499.827101	997.639649	-0.40595	-0.0002029	-0.39627	-0.00019807	-0.80222	-0.00040097	499.82694457385327	22.035	1.3595	21.844	21.42	22.779	-0.19072					73	28	5	0	0	0	0.65272	2	753	741;753		71.378	8.3995	1	4660500			63362	5568	44612	44675	68585;68586	68586					0.14073434705096588
QNKKRVLL	8	Unmodified	_QNKKRVLL_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.826904296875	2	499.827101	997.639649	-0.78252	-0.00039112	-0.059139	-2.9559E-05	-0.84166	-0.00042068	499.82709477009644	21.987	1.2319	21.785	21.421	22.653	-0.20199					69	25	5	0	0	0	0.88442	1	705	705		52.299	4.3836	1	4524900			63363	5568	44612	44675	68587	68587					0.14073434705096588
QNKRTLAI	8	Unmodified	_QNKRTLAI_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28753662109375	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.0574	1	11821	11821		23.042	1.0826	1	42478000	+		63364	27409	44613	44676	68588	68588					0.08748582399982752
QNKSPRVPRL	10	Unmodified	_QNKSPRVPRL_					0	0	0		nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8564453125	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0616	1	11585	11585		37.812	1.3648	1	5655800			63365	3519	44614	44677	68589	68589					0.11018705648461946
QNKVAVLL	8	Unmodified	_QNKVAVLL_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.7646484375	2	442.781828	883.549102	0.26457	0.00011715	-0.090432	-4.0042E-05	0.17414	7.7106E-05	442.7816068307828	80.032	0.37746	79.786	79.53	79.907	-0.2465					13	8	2	0	0	0	0.027866	1	9568	9568		19.36	0	1	44970			63366	3611	44615	44678	68590	68590					0.10266965656808225
QNKVAVLL	8	Unmodified	_QNKVAVLL_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.781828	883.549102	0.17486	7.7424E-05	0.19126	8.4686E-05	0.36612	0.00016211	442.7817083023423	79.997	0.25517	79.778	79.618	79.873	-0.21923	0.0040843	0.00040856	NaN	19.36	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38979			63367	3611	44615	44678							0.10266965656808225
QNKVAVLL	8	Unmodified	_QNKVAVLL_					0	0	0		nc|ENSG00000117143|Q16222-2|UAP1;nc|ENSG00000117143|Q16222-3|UAP1;ENSG00000117143|ENST00000367925|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	nc|ENSG00000117143|Q16222-2|UAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.781828	883.549102	0.39338	0.00017418	-1.1138	-0.00049317	-0.72042	-0.00031899	442.78152975003485	79.909	0.33707	79.758	79.529	79.866	-0.15051	-0.015779	-0.00074715	NaN	19.36	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54412			63368	3611	44615	44678							0.10266965656808225
QNKVPLLG	8	Unmodified	_QNKVPLLG_					0	0	0		ENSG00000196850|ENST00000354300|PPTC7	ENSG00000196850|ENST00000354300|PPTC7	ENSG00000196850|ENST00000354300|PPTC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7671813964844	2	434.766178	867.517802	0.025078	1.0903E-05	0.15204	6.61E-05	0.17711	7.7003E-05	434.76609756742886	19.442	0.81622	19.323	19.101	19.918	-0.11872					38	16	3	0	0	0	1.0572	1	418	418		28.254	3.7503	1	313890			63369	9928	44616	44679	68591	68591					0.07874392622727555
QNLENLIEVNS	11	Unmodified	_QNLENLIEVNS_					0	0	0		nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL	nc|ENSG00000136155|O95171-3|SCEL	nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.23870849609375	3	424.885858	1271.63574	0.15115	6.4223E-05	0.99196	0.00042147	1.1431	0.00048569	424.88627665902	22.177	0.84878	21.975	21.712	22.561	-0.20199					26	17	3	0	0	0	0.02473	1	702	702		33.039	21.585	1	147510			63370	4989	44617	44680	68592	68592					0.010792556300657452
QNLFYALFL	9	Unmodified	_QNLFYALFL_					0	0	0		nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2888793945312	2	564.808042	1127.60153	0.30691	0.00017335	4.3007	0.0024291	4.6076	0.0026024	564.8093024271163	72.456	0.30115	72.191	72.084	72.385	-0.26479					9	6	2	0	0	0	0.024381	1	8486	8486		37.159	5.6293	1	54401			63371	18343	44618	44681	68593	68593					0.042835039997498825
QNLHEETTF	9	Unmodified	_QNLHEETTF_					0	0	0		nc|ENSG00000249961|Q8NA31-3|TERB1;nc|ENSG00000249961|Q8NA31-2|TERB1;ENSG00000249961|ENST00000433154|TERB1	nc|ENSG00000249961|Q8NA31-3|TERB1	nc|ENSG00000249961|Q8NA31-3|TERB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.7717895507812	2	559.759278	1117.504	0.47769	0.00026739	3.8048	0.0021298	4.2825	0.0023972	559.7616611154905	20.814	0.5412	20.882	20.71	21.251	0.068901					14	10	2	0	0	0	0.024506	1	558	558		38.806	10.924	1	19493			63372	10845	44619	44682	68594	68594					-0.05004929667052238
QNLHEQPD	8	Unmodified	_QNLHEQPD_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71|RTEL1	REV__nc|ENSG00000258366|Q9NZ71|RTEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2939147949219	2	490.725238	979.435923	-0.45498	-0.00022327	1.7078	0.00083807	1.2528	0.0006148	490.7259599210262	59.643	0.78282	59.729	59.389	60.171	0.085682					57	20	4	0	0	0	0.027866	1	6696	6696		47.916	9.1095	1	1898800	+		63373	29096	44620	44683	68595	68595					-0.05461754527050289
QNLIMIESPE	10	Unmodified	_QNLIMIESPE_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	587.2955932617188	2	587.294639	1172.57472	-0.074375	-4.368E-05	1.0253	0.00060217	0.95096	0.00055849	587.2952118838654	73.974	2.1507	73.974	73.655	75.806	0					175	53	6	0	0	0	0.77808	1	9101	9101		62.107	0.41614	1	52037000	+		63374	26054	44621	44684	68596	68596					-0.00465972673714532
QNLIQQAKF	9	Unmodified	_QNLIQQAKF_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.7587280273438	2	545.306198	1088.59784	-0.90172	-0.00049171	3.7142	0.0020254	2.8125	0.0015337	545.3082129873306	25.962	0.40761	25.726	25.508	25.916	-0.23603					21	9	3	0	0	0	0.024381	1	1282	1282		55.504	4.1688	1	406820			63375	4804	44622	44685	68597	68597					0.057088342259021374
QNLIVRDIA	9	Unmodified	_QNLIVRDIA_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7876586914062	2	521.306198	1040.59784	0.11836	6.1704E-05	-0.95181	-0.00049618	-0.83344	-0.00043448	521.3058911922845	52.936	0.31401	52.746	52.591	52.905	-0.18982					11	7	2	0	0	0	0.024477	1	5490	5490		27.882	3.6795	1	76229			63376	3557	44623	44686	68598	68598					0.07916834225898128
QNLKVREM	8	Unmodified	_QNLKVREM_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3262634277344	2	509.279126	1016.5437	-0.16558	-8.4324E-05	-2.0921	-0.0010654	-2.2576	-0.0011498	509.2778792691373	56.619	0.47874	56.452	56.041	56.52	-0.1672					18	11	2	0	0	0	0.027866	1	6144	6144		31.955	5.1588	1	457610	+		63377	27537	44624	44687	68599	68599					0.03608918802683547
QNLLKRLI	8	Unmodified	_QNLLKRLI_					0	0	0		chr5:69168235-69171270|111|22.59|0.1|7.8|+|1|None,CCNB1|1	chr5:69168235-69171270|111|22.59|0.1|7.8|+|1|None,CCNB1|1	chr5:69168235-69171270|111|22.59|0.1|7.8|+|1|None,CCNB1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.76904296875	2	499.329476	996.6444	1.1208	0.00055965	-0.44258	-0.00022099	0.67821	0.00033865	499.3292128129574	19.484	0.34694	19.25	19.126	19.473	-0.23345					9	6	2	0	0	0	0.027866	1	419	419		20.482	0	1	18171			63378	404	44625	44688	68600	68600					0.1459431884784408
QNLLKRLI	8	Unmodified	_QNLLKRLI_					0	0	0		chr5:69168235-69171270|111|22.59|0.1|7.8|+|1|None,CCNB1|1	chr5:69168235-69171270|111|22.59|0.1|7.8|+|1|None,CCNB1|1	chr5:69168235-69171270|111|22.59|0.1|7.8|+|1|None,CCNB1|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.329476	996.6444	0.27088	0.00013526	0.32314	0.00016136	0.59402	0.00029661	499.3293789750074	19.437	0.29686	19.276	19.084	19.381	-0.16079	-0.017041	0.00039888	NaN	13.775	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14763			63379	404	44625	44688							0.1459431884784408
QNLLLQKDEL	10	Unmodified	_QNLLLQKDEL_					0	0	0		ENSG00000230601|ENST00000436752|TEX48	ENSG00000230601|ENST00000436752|TEX48	ENSG00000230601|ENST00000436752|TEX48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.9066162109375	3	405.231077	1212.6714	0.21211	8.5954E-05	1.1312	0.00045839	1.3433	0.00054435	405.2314955777	22.936	0.57451	22.875	22.616	23.19	-0.060862					30	12	4	0	0	0	0.03519	1	819	819		47.96	10.451	1	402600			63380	10692	44626	44689	68601	68601					0.07357337877715509
QNLLLQKDEL	10	Unmodified	_QNLLLQKDEL_					0	0	0		ENSG00000230601|ENST00000436752|TEX48	ENSG00000230601|ENST00000436752|TEX48	ENSG00000230601|ENST00000436752|TEX48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.90655517578125	3	405.231077	1212.6714	1.0705	0.00043381	0.21465	8.6982E-05	1.2852	0.00052079	405.2310994317981	22.769	0.7314	22.843	22.461	23.193	0.073954					40	15	4	0	0	0	0.03519	1	757	757		53.089	8.0668	1	296480			63381	10692	44626	44689	68602	68602					0.07357337877715509
QNLLQKQH	8	Unmodified	_QNLLQKQH_					0	0	0		nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA	nc|ENSG00000137831|Q9BZF9-2|UACA	nc|ENSG00000137831|Q9BZF9-2|UACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7846984863281	2	504.78289	1007.55123	-0.081644	-4.1212E-05	2.1841	0.0011025	2.1025	0.0010613	504.7839530636181	98.088	1.3622	98.088	97.683	99.045	0					65	31	3	0	0	0	1.0338	1	12509	12509		31.955	0.42505	1	1114600			63382	5165	44627	44690	68603	68603					0.047753943946077015
QNLLQRANK	9	Unmodified	_QNLLQRANK_					0	0	0		nc|ENSG00000213085|Q9UL16-2|CFAP45;ENSG00000213085|ENST00000368099|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8095092773438	2	542.814722	1083.61489	-1.1673	-0.00063363	-3.2856	-0.0017835	-4.4529	-0.0024171	542.8127970143588	44.361	0.24584	44.117	43.94	44.186	-0.2444					10	6	2	0	0	0	0.024405	1	4102	4102		35.618	0	1	151020			63383	10491	44628	44691	68604	68604					0.07642754831681486
QNLLRLFR	8	Unmodified	_QNLLRLFR_					0	0	0		CAPN11|p.L262F|1|0.15|ENSG00000137225|chr6:44173339-44173339|C/T|missense_variant	CAPN11|p.L262F|1|0.15|ENSG00000137225|chr6:44173339-44173339|C/T|missense_variant	CAPN11|p.L262F|1|0.15|ENSG00000137225|chr6:44173339-44173339|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3192138671875	2	530.324725	1058.6349	-0.51765	-0.00027452	2.68	0.0014213	2.1623	0.0011467	530.3259513116045	93.55	0.78587	93.55	93.261	94.047	0					27	18	2	0	0	0	0.027866	1	11901	11901		24.203	0	1	218860			63384	212	44629	44692	68605	68605					0.10792550562314318
QNLNSLRGF	9	Unmodified	_QNLNSLRGF_					0	0	0		ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3135375976562	2	524.780348	1047.54614	-0.56853	-0.00029835	-3.8218	-0.0020056	-4.3904	-0.002304	524.776741204564	72.586	0.81677	72.586	72.292	73.109	0					35	19	3	0	0	0	0.024457	1	8901	8901		29.15	15.374	1	206480			63385	7053	44630	44693	68606	68606					0.024270905319781377
QNLNSLRGF	9	Unmodified	_QNLNSLRGF_					0	0	0		ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.780348	1047.54614	0.55844	0.00029306	-4.7467	-0.002491	-4.1883	-0.0021979	524.7762575131278	72.618	0.52829	72.628	72.331	72.859	0.0097733	0.017438	0.0012142	NaN	15.642	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239660			63386	7053	44630	44693							0.024270905319781377
QNLNSLRGFV	10	Unmodified	_QNLNSLRGFV_					0	0	0		ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.3151245117188	2	574.314554	1146.61456	-0.79754	-0.00045804	3.9814	0.0022866	3.1838	0.0018285	574.3166765447795	56.6	0.84776	56.698	56.359	57.207	0.097893					54	23	4	0	0	0	0.98754	1	6236	6236		47.657	3.2801	1	4047500			63387	7053	44631	44694	68607	68607					0.04711335111824155
QNLPRALS	8	Unmodified	_QNLPRALS_					0	0	0		ENST00000529357.5_1_17:43475293-43487738:-|nuORF;ENST00000579357.1_1_17:43487543-43487738:-|nuORF	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.240966796875	2	449.758884	897.503215	-0.089031	-4.0043E-05	-3.1737	-0.0014274	-3.2627	-0.0014674	449.7584020149752	31.266	0.58842	31.278	30.956	31.545	0.011797					20	13	2	0	0	0	0.027866	1	2021	2021		18.324	0	1	109910			63388	16207	44632	44695	68608	68608					0.05036320474550848
QNLQRGLERL	10	Unmodified	_QNLQRGLERL_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.5701904296875	3	409.570316	1225.68912	0.47709	0.0001954	-0.65174	-0.00026693	-0.17465	-7.1533E-05	409.5700698054109	32.399	1.1047	32.399	32.07	33.174	0					81	28	5	0	0	0	0.98527	1	2238	2238		47.96	0	1	5839100	+		63389	36786	44633	44696	68609	68609					0.08530097923221547
QNLRSIILE	9	Unmodified	_QNLRSIILE_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.296630859375	2	543.319306	1084.62406	-1.4039	-0.00076279	0.35804	0.00019453	-1.0459	-0.00056826	543.3193806343411	62.592	0.35988	62.592	62.409	62.769	0					20	8	3	0	0	0	0.0242	1	7280	7280		60.118	8.9256	1	1146100	+		63390	23342	44634	44697	68610	68610					0.08513103397376653
QNLRVAIW	8	Unmodified	_QNLRVAIW_					0	0	0		ENST00000398645.6_1_11:66887311-66947572:+|nuORF	ENST00000398645.6_1_11:66887311-66947572:+|nuORF	ENST00000398645.6_1_11:66887311-66947572:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.9708557128906	2	500.290351	998.566149	1.3519	0.00067635	-3.3436	-0.0016727	-1.9916	-0.0009964	500.28807204971724	17.339	0.20144	17.185	17.057	17.259	-0.15403					6	3	2	0	0	0	0.027866	1	169	169		33.516	11.813	1	20034			63391	13627	44635	44698	68611	68611					0.06680886262597596
QNLRVAIW	8	Unmodified	_QNLRVAIW_					0	0	0		ENST00000398645.6_1_11:66887311-66947572:+|nuORF	ENST00000398645.6_1_11:66887311-66947572:+|nuORF	ENST00000398645.6_1_11:66887311-66947572:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.290351	998.566149	0.40103	0.00020063	-4.3482	-0.0021754	-3.9472	-0.0019747	500.7893494392004	17.322	0.14539	17.179	17.084	17.229	-0.14278	-0.0029244	-0.0005475	NaN	33.516	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9005			63392	13627	44635	44698							0.06680886262597596
QNLSDIAAI	9	Unmodified	_QNLSDIAAI_					0	0	0			REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	REV__nc|ENSG00000137944|Q6YP21-3|KYAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.79736328125	2	472.756007	943.497461	-0.45577	-0.00021547	4.3679	0.002065	3.9122	0.0018495	472.75741881377706	85.894	0.7622	85.918	85.657	86.419	0.023674					26	17	2	0	0	0	0.024294	1	10674	10674		45.952	15.448	1	71076	+		63393	23798	44636	44699	68612	68612					0.02345177172219337
QNLSNLVIF	9	Unmodified	_QNLSNLVIF_					0	0	0			REV__ENSG00000113916|ENST00000406870|BCL6	REV__ENSG00000113916|ENST00000406870|BCL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.3135375976562	2	524.295299	1046.57605	-0.96964	-0.00050838	4.1157	0.0021579	3.1461	0.0016495	524.2976899532472	72.997	0.37436	72.997	72.698	73.072	0					11	8	2	0	0	0	0.024539	1	8901	8901		20.947	4.4738	1	56487	+		63394	22098	44637	44700	68613	68613					0.054620294773030764
QNLSNLVIF	9	Unmodified	_QNLSNLVIF_					0	0	0			REV__ENSG00000113916|ENST00000406870|BCL6	REV__ENSG00000113916|ENST00000406870|BCL6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.295299	1046.57605	-0.058447	-3.0644E-05	3.0546	0.0016015	2.9961	0.0015708	524.2971722778766	73.218	0.37061	72.947	72.719	73.09	-0.27126	-0.059683	0.00087391	NaN	14.865	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43471	+		63395	22098	44637	44700							0.054620294773030764
QNLSPTKGNI	10	Unmodified	_QNLSPTKGNI_					0	0	0		ENSG00000114126|ENST00000489671|TFDP2	ENSG00000114126|ENST00000489671|TFDP2	ENSG00000114126|ENST00000489671|TFDP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7683715820312	2	536.293288	1070.57202	-0.79899	-0.00042849	-0.83725	-0.00044901	-1.6362	-0.0008775	536.2918009765814	37.004	0.47288	37.036	36.716	37.189	0.032272					24	11	3	0	0	0	0.03519	1	2921	2921		60.118	8.7828	1	165300			63396	3345	44638	44701	68614	68614					0.039559399836207376
QNLTIILEE	9	Unmodified	_QNLTIILEE_					0	0	0		L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|32|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|32|2|sense	L1ME3A_dup13023|chr15:100397490-100399097:-|2.0283237357336006|0.3180219890704666|2.67|519.0|32|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3423461914062	2	536.797872	1071.58119	-0.84111	-0.0004515	1.9956	0.0010713	1.1545	0.00061975	536.7990778262687	26.981	1.4897	26.739	26.191	27.68	-0.24217					52	35	3	0	0	0	0.024506	1	1510	1510		23.042	0	1	241160			63397	17833	44639	44702	68615	68615					0.04826288549293167
QNLVAKPK	8	Unmodified	_QNLVAKPK_					0	0	0			REV__MINK1-ALOX12|1|fusion	REV__MINK1-ALOX12|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2701721191406	2	449.279452	896.544351	0.013602	6.1113E-06	0.39243	0.00017631	0.40603	0.00018242	449.27940821256266	21.55	0.48524	21.359	21.128	21.613	-0.19072					22	9	3	0	0	0	0.027866	1	647	647		12.207	0	1	85013	+		63398	21765	44640	44703	68616	68616					0.09194081514033314
QNLVKYYR	8	Unmodified	_QNLVKYYR_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant;PHIP|p.T59I|1|0.04|ENSG00000146247|chr6:79077461-79077461|G/A|missense_variant	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2442626953125	2	542.300916	1082.58728	-1.2254	-0.00066455	-2.6301	-0.0014263	-3.8556	-0.0020909	542.301433525674	65.01	0.76533	64.808	64.461	65.226	-0.20254					64	18	5	0	0	0	0.027866	1	7367	7367		25.45	4.5032	1	6985300			63399	5868	44641	44704	68617	68617					0.04928851571457926
QNLVKYYR	8	Unmodified	_QNLVKYYR_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant;PHIP|p.T59I|1|0.04|ENSG00000146247|chr6:79077461-79077461|G/A|missense_variant	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	542.300916	1082.58728	-1.2674	-0.00068734	0.76877	0.0004169	-0.49868	-0.00027043	542.3013244225551	65.08	0.63985	64.825	64.504	65.144	-0.25563	0.031473	0.00048687	NaN	18.324	30	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4543200			63400	5868	44641	44704							0.04928851571457926
QNLVLNCTCPI	11	Unmodified	_QNLVLNCTCPI_					0	0	0		ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.8878173828125	3	406.538748	1216.59441	-1.2009	-0.0004882	3.2717	0.0013301	2.0708	0.00084187	406.5397032750069	33.547	0.47683	33.382	33.195	33.672	-0.16565					14	11	2	0	0	0	0.024785	1	2401	2401		33.039	15.873	1	89822			63401	3229	44642	44705	68618	68618					-0.005219199346356618
QNLWNPTYR	9	Unmodified	_QNLWNPTYR_					0	0	0		ENST00000563518.5_1_15:41796196-41797203:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK	ENST00000563518.5_1_15:41796196-41797203:-|nuORF	ENST00000563518.5_1_15:41796196-41797203:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.3224487304688	2	596.298904	1190.58326	-0.045773	-2.7294E-05	3.5045	0.0020897	3.4587	0.0020624	596.3014541431746	50.444	0.22623	50.264	50.055	50.282	-0.18071					6	5	2	0	0	0	0.024427	1	5115	5115		51.335	14.889	1	136830			63402	16870	44643	44706	68619	68619					-0.004412379222458185
QNMDFEQWQ	9	Unmodified	_QNMDFEQWQ_					0	0	0			REV__nc|ENSG00000128595|O43852-2|CALU	REV__nc|ENSG00000128595|O43852-2|CALU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.182861328125	3	409.169601	1224.48697	0.19639	8.0357E-05	-0.080326	-3.2867E-05	0.11606	4.749E-05	409.5046085605523	24.929	0.39653	24.754	24.554	24.95	-0.17484					12	8	2	0	0	0	0.024367	1	1155	1155		62.107	24.599	1	45831	+		63403	36646	44644	44707	68620	68620					-0.116291735445202
QNMLEQLLI	9	Unmodified	_QNMLEQLLI_					0	0	0		ENST00000477396.5_1_9:135749797-135753642:-|nuORF;ENSG00000165695|ENST00000298545|AK8	ENST00000477396.5_1_9:135749797-135753642:-|nuORF	ENST00000477396.5_1_9:135749797-135753642:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.2719116210938	2	551.302267	1100.58998	0.8682	0.00047864	-3.8771	-0.0021374	-3.0089	-0.0016588	551.2998546249411	51.227	0.6553	51.046	50.797	51.453	-0.18071					32	16	3	0	0	0	0.024541	1	5213	5213		16.473	0	1	711810			63404	7455	44645	44708	68621	68621					0.043709389141440624
QNMPPPPPQ	9	Unmodified	_QNMPPPPPQ_					0	0	0			REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7619323730469	2	503.244752	1004.47495	-0.070142	-3.5299E-05	-3.1714	-0.001596	-3.2415	-0.0016313	503.24309511154706	48.057	0.4093	47.87	47.712	48.121	-0.18684					13	10	2	0	0	0	0.02435	1	4710	4710		51.335	8.9393	1	128060	+		63405	26226	44646	44709	68622	68622					-0.027107454970291656
QNMPPPPPQ	9	Unmodified	_QNMPPPPPQ_					0	0	0			REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.244752	1004.47495	-0.40598	-0.00020431	-2.1842	-0.0010992	-2.5901	-0.0013035	503.2435099423772	47.972	0.40854	47.874	47.705	48.114	-0.097553	-0.059108	0.00057293	NaN	51.335	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108270	+		63406	26226	44646	44709							-0.027107454970291656
QNMPPPPPQ	9	Unmodified	_QNMPPPPPQ_					0	0	0			REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	REV__ENST00000477596.1_1_11:64534366-64535112:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.244752	1004.47495	-0.98417	-0.00049528	-2.6059	-0.0013114	-3.5901	-0.0018067	503.2435851166784	48.332	0.40908	48.056	47.812	48.222	-0.27598	0.12257	0.00014844	NaN	51.335	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161840	+		63407	26226	44646	44709							-0.027107454970291656
QNMTADQAANL	11	Unmodified	_QNMTADQAANL_					0	0	0		ENSG00000112365|ENST00000230122|ZBTB24	ENSG00000112365|ENST00000230122|ZBTB24	ENSG00000112365|ENST00000230122|ZBTB24	MSMS	OPSCC_40_ClassI_Rep-3	6	588.7681884765625	2	588.769319	1175.52409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.37	1	101.2	100.7	101.7	-0.17178								0	0	0	1.0224	1	12571	12571		42.864	2.0861	1				63408	3206	44647	44710	68623	68623					-0.056655019987374544
QNNAARVF	8	Unmodified	_QNNAARVF_					0	0	0			REV__ENSG00000136197|ENST00000350427|C7orf25	REV__ENSG00000136197|ENST00000350427|C7orf25	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.24273681640625	2	460.240858	918.467164	0.56459	0.00025985	3.1416	0.0014459	3.7062	0.0017057	460.2421417516996	17.201	0.75616	17.059	16.895	17.651	-0.14278					29	16	3	0	0	0	1.0133	1	124	124		35.201	6.9464	1	470610	+		63409	23636	44648	44711	68624	68624					0.004668632977086418
QNNAKVAVLG	10	Unmodified	_QNNAKVAVLG_					0	0	0		ENSG00000146701|ENST00000315758|MDH2;nc|ENSG00000146701|P40926-2|MDH2;ENST00000461665.5_1_7:75677478-75687456:+|nuORF	ENSG00000146701|ENST00000315758|MDH2	ENSG00000146701|ENST00000315758|MDH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2691650390625	2	507.290548	1012.56654	-0.73654	-0.00037364	-3.9859	-0.002022	-4.7224	-0.0023956	507.79022438337023	45.224	0.54902	45.125	44.672	45.221	-0.099449					20	14	2	0	0	0	0.03519	1	4200	4200		26.693	4.1133	1	163090			63410	5902	44649	44712	68625	68625					0.06076261191810772
QNNAQYELEKR	11	Unmodified	_QNNAQYELEKR_					0	0	0			REV__nc|ENSG00000115652|Q8NBZ7|UXS1	REV__nc|ENSG00000115652|Q8NBZ7|UXS1	MSMS	OPSCC_40_ClassI_Rep-1	4	464.90081787109375	3	464.90039	1391.67934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.227	1	20.059	19.559	20.559	-0.16774								0	0	0	1.1423	1	523	523		34.087	0	1		+		63411	22221	44650	44713	68626	68626					-0.0008313487282975984
QNNIVLGP	8	Unmodified	_QNNIVLGP_					0	0	0			REV__nc|ENSG00000263001|P78347-2|GTF2I	REV__nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.248291015625	2	427.74016	853.465767	0.64772	0.00027705	-0.39588	-0.00016933	0.25184	0.00010772	427.73991521063635	22.464	1.2131	22.262	21.855	23.069	-0.20199					52	25	3	0	0	0	0.027866	1	838	838		13.775	7.0398	1	1955600	+		63412	29127	44651	44714	68627	68627					0.03317229208937533
QNNIYLKQ	8	Unmodified	_QNNIYLKQ_					0	0	0		ENSG00000078098|ENST00000188790|FAP;ENST00000480838.1_1_2:163066458-163099837:-|nuORF	ENSG00000078098|ENST00000188790|FAP	ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26947021484375	2	510.777274	1019.53999	-0.66367	-0.00033899	1.0435	0.000533	0.37984	0.00019401	510.7778089900202	26.85	0.42241	26.694	26.464	26.887	-0.15664					14	9	2	0	0	0	0.027866	1	1387	1387		19.36	11.67	1	214640			63413	1627	44652	44715	68628	68628					0.031005723004795982
QNNNKQTEP	9	Unmodified	_QNNNKQTEP_					0	0	0		ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	ENST00000510590.1_1_4:169298892-169300981:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.783935546875	2	536.754527	1071.4945	-0.7666	-0.00041148	-2.509	-0.0013467	-3.2756	-0.0017582	536.7528866659261	31.427	1.6168	31.439	30.871	32.488	0.011799					84	39	3	0	0	0	0.024374	1	2151	2151		40.778	7.9657	1	259760			63414	15826	44653	44716	68629	68629					-0.03838697952573966
QNNVSVDSL	9	Unmodified	_QNNVSVDSL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2409362792969	2	488.240721	974.466889	-1.0176	-0.00049686	-0.060288	-2.9435E-05	-1.0779	-0.00052629	488.2402612791165	51.893	1.6324	51.985	51.38	53.013	0.091938					110	43	3	0	0	0	0.6504	1	5522	5522		49.442	3.4693	1	1504300			63415	9292	44654	44717	68630	68630					-0.021366012128055445
QNNYGAGVYY	10	Unmodified	_QNNYGAGVYY_					0	0	0		ENST00000494388.1_1_3:11885478-11888134:-|nuORF;ENST00000417723.1_1_3:11874583-11886385:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	ENST00000494388.1_1_3:11885478-11888134:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.7578125	2	574.753995	1147.49344	0.30625	0.00017602	-0.71158	-0.00040899	-0.40534	-0.00023297	574.7535747910416	100.88	0.23975	100.76	100.65	100.89	-0.12576					9	6	2	0	0	0	1.0408	1	12537	12537		40.573	2.7611	1	82979			63416	15528	44655	44718	68631	68631					-0.0744091232147639
QNPAFLSKAF	10	Unmodified	_QNPAFLSKAF_					0	0	0		ENST00000473357.1_1_22:24223769-24224048:+|nuORF	ENST00000473357.1_1_22:24223769-24224048:+|nuORF	ENST00000473357.1_1_22:24223769-24224048:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7899780273438	2	561.800749	1121.58694	-0.56337	-0.0003165	-0.54834	-0.00030806	-1.1117	-0.00062456	561.800758540681	49.022	0.47208	48.742	48.501	48.973	-0.27977					18	12	2	0	0	0	0.03519	1	4906	4906		16.007	0	1	136290			63417	15007	44656	44719	68632	68632					0.031014318516099593
QNPAGHFPVW	10	Unmodified	_QNPAGHFPVW_					0	0	0			REV__ENSG00000185761|ENST00000330475|ADAMTSL5	REV__ENSG00000185761|ENST00000330475|ADAMTSL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.78271484375	2	576.78289	1151.55123	-0.73592	-0.00042447	-0.29459	-0.00016992	-1.0305	-0.00059438	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	1.1267	1	7486	7486		29.15	1.2673	1	1832600	+		63418	27794	44657	44720	68633	68633					-0.0184860560539164
QNPGELSL	8	Unmodified	_QNPGELSL_					0	0	0			REV__ENST00000392627.5_1_17:72428151-72435937:+|nuORF	REV__ENST00000392627.5_1_17:72428151-72435937:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	429.73834228515625	2	429.2218	856.429047	-0.51954	-0.000223	0.90355	0.00038783	0.38401	0.00016483	429.22205276450796	39.477	0.87886	39.501	39.099	39.978	0.023727					47	24	3	0	0	0	0.027866	1	3396	3396		10.866	0	1	476930	+		63419	31616	44658	44721	68634	68634					-0.004910674075972565
QNPLNYRA	8	Unmodified	_QNPLNYRA_					0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7793884277344	2	488.253966	974.493378	-0.28329	-0.00013832	0.94322	0.00046053	0.65993	0.00032221	488.2541132938564	24.045	1.7349	24.123	23.478	25.213	0.078346					45	38	2	0	0	0	0.027866	1	1012	1012		7.6903	0	1	201070	+		63420	19221	44659	44722	68635	68635					0.005111324691824848
QNPWQPKP	8	Unmodified	_QNPWQPKP_					0	0	0		ENSG00000164123|ENST00000434826|C4orf45	ENSG00000164123|ENST00000434826|C4orf45	ENSG00000164123|ENST00000434826|C4orf45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.3169250488281	2	497.758884	993.503215	0.037383	1.8608E-05	2.724	0.0013559	2.7614	0.0013745	497.760035014223	78.818	1.8692	78.818	78.042	79.911	0					75	44	3	0	0	0	0.027866	1	9821	9821		38.806	10.552	1	368190			63421	7220	44660	44723	68636	68636					0.006203204745588664
QNQEVEKEN	9	Unmodified	_QNQEVEKEN_					0	0	0		TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2852783203125	2	559.259642	1116.50473	-0.17451	-9.7599E-05	3.1495	0.0017614	2.975	0.0016638	559.2612848404865	40.515	0.58479	40.29	39.891	40.476	-0.225					28	15	2	0	0	0	0.024484	1	3439	3439		37.812	7.3079	1	335390			63422	4067	44661	44724	68637	68637					-0.04886135018000459
QNQIRRQP	8	Unmodified	_QNQIRRQP_					0	0	0			REV__ENST00000595618.5_2_19:17323164-17323401:+|nuORF	REV__ENST00000595618.5_2_19:17323164-17323401:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2737426757812	2	520.291414	1038.56827	-0.28628	-0.00014895	0.93099	0.00048439	0.64471	0.00033544	520.2918787544673	61.527	0.49356	61.313	60.881	61.375	-0.21375					21	11	3	0	0	0	0.027866	1	6870	6870		30.504	2.6214	1	1909800	+		63423	35786	44662	44725	68638	68638					0.05053315000395742
QNQKWIKD	8	Unmodified	_QNQKWIKD_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2557373046875	2	530.282723	1058.55089	-1.739	-0.00092218	3.1713	0.0016817	1.4323	0.00075952	530.2841945086728	29.052	0.63687	29.052	28.696	29.333	0					25	15	2	0	0	0	0.027866	1	1731	1731		25.45	5.4534	1	129120	+		63424	27110	44663	44726	68639	68639					0.023959746747550525
QNQLLVPL	8	Unmodified	_QNQLLVPL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2694091796875	2	462.779285	923.544017	-0.35489	-0.00016424	2.0833	0.00096409	1.7284	0.00079986	462.7798698234393	45.36	0.43417	45.36	45.114	45.548	0					18	12	2	0	0	0	0.027866	1	4433	4433		26.796	2.5934	1	251000	+		63425	25256	44664	44727	68640	68640					0.0791866179419003
QNQLLVPL	8	Unmodified	_QNQLLVPL_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.779285	923.544017	0.37265	0.00017245	1.2884	0.00059625	1.6611	0.0007687	462.7794638931694	45.395	0.29847	45.439	45.247	45.546	0.043877	0.039235	-0.00033332	NaN	19.36	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277170	+		63426	25256	44664	44727							0.0791866179419003
QNQLTSVK	8	Unmodified	_QNQLTSVK_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2249450683594	2	459.256174	916.497795	-0.30556	-0.00014033	0.35365	0.00016241	0.048085	2.2083E-05	459.25619396952277	27.546	0.48733	27.533	27.352	27.84	-0.012983					21	12	2	0	0	0	0.027866	1	1481	1481		27.882	6.9353	1	182870	+		63427	26412	44665	44728	68641	68641					0.03620596892096728
QNQLYKALL	9	Unmodified	_QNQLYKALL_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2759399414062	2	545.816399	1089.61824	-1.1006	-0.00060071	1.1642	0.00063541	0.063576	3.4701E-05	545.8167258110575	75.886	0.58477	75.886	75.806	76.391	0					22	14	2	0	0	0	0.024381	1	9410	9410		37.159	16.212	1	223240	+		63428	27352	44666	44729	68642	68642					0.07702004885709357
QNQMKLLR	8	Unmodified	_QNQMKLLR_					0	0	0			REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2618408203125	2	515.794943	1029.57533	-1.3941	-0.00071905	2.8763	0.0014836	1.4823	0.00076455	516.2968217897854	30.508	0.29066	30.508	30.343	30.634	0					10	6	2	0	0	0	0.027866	1	1941	1941		18.324	0	1	45829	+		63429	20784	44667	44730	68643	68643					0.061729115566322434
QNQMKLLR	8	Unmodified	_QNQMKLLR_					0	0	0			REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.794943	1029.57533	-0.52504	-0.00027081	8.6027	0.0044372	8.0777	0.0041664	515.7989569780821	30.734	0.74658	30.49	30.245	30.992	-0.24415	0.017525	0.0010467	NaN	12.207	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106420	+		63430	20784	44667	44730							0.061729115566322434
QNQMKLLR	8	Unmodified	_QNQMKLLR_					0	0	0			REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.794943	1029.57533	-0.58228	-0.00030034	7.9363	0.0040935	7.354	0.0037932	515.7988316982537	30.55	0.46498	30.372	30.243	30.708	-0.17817	-0.10066	0.00035919	NaN	12.207	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81747	+		63431	20784	44667	44730							0.061729115566322434
QNQMKLLR	8	Unmodified	_QNQMKLLR_					0	0	0			REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	REV__FTL|p.H133Sfs*2|1|0.29|ENSG00000087086|chr19:48966601-48966604|ACTC/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.794943	1029.57533	-0.085127	-4.3908E-05	7.5408	0.0038895	7.4557	0.0038456	515.7984987891791	30.67	0.50767	30.52	30.301	30.809	-0.14952	0.047658	-4.8827E-05	NaN	12.207	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69479	+		63432	20784	44667	44730							0.061729115566322434
QNQNHLKVK	9	Unmodified	_QNQNHLKVK_					0	0	0		ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7507934570312	2	554.814722	1107.61489	-0.40476	-0.00022457	3.063	0.0016994	2.6582	0.0014748	554.8161764601679	64.613	0.55396	64.41	64.224	64.778	-0.20254					17	13	2	0	0	0	0.024436	1	7400	7400		30.504	9.5567	1	159840			63433	12859	44668	44731	68644	68644					0.0653875483169486
QNQNHLKVK	9	Unmodified	_QNQNHLKVK_					0	0	0		ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.814722	1107.61489	-1.6337	-0.0009064	3.7982	0.0021073	2.1644	0.0012009	554.8164536211196	65.001	0.41722	64.739	64.494	64.911	-0.2626	0.15666	0.00083323	NaN	23.042	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165400			63434	12859	44668	44731							0.0653875483169486
QNQNHLKVK	9	Unmodified	_QNQNHLKVK_					0	0	0		ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	554.814722	1107.61489	-0.54745	-0.00030373	2.6866	0.0014906	2.1392	0.0011869	554.8160277095853	64.686	0.41226	64.731	64.563	64.975	0.045502	0.14906	-0.00040012	NaN	23.042	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128740			63435	12859	44668	44731							0.0653875483169486
QNQNHLKVK	9	Unmodified	_QNQNHLKVK_					0	0	0		ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	ENST00000367478.8_1_1:186306158-186307193:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	554.814722	1107.61489	-0.5034	-0.00027929	2.6989	0.0014974	2.1955	0.0012181	554.8158801548941	64.683	0.71382	64.448	64.216	64.93	-0.2345	-0.1339	-0.00038653	NaN	23.042	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229620			63436	12859	44668	44731							0.0653875483169486
QNQNKLLVA	9	Unmodified	_QNQNKLLVA_					0	0	0			REV__nc|ENSG00000135407|O75366-2|AVIL	REV__nc|ENSG00000135407|O75366-2|AVIL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.2979125976562	2	514.298373	1026.58219	-0.24512	-0.00012606	-0.23753	-0.00012216	-0.48264	-0.00024822	514.2980950801538	95.286	1.1712	95.149	94.723	95.894	-0.13689					65	26	4	0	0	0	0.92825	1	11728	11728		30.504	2.6214	1	1439900	+		63437	23540	44669	44732	68645	68645					0.0699654770885445
QNQSVGNPEY	10	Unmodified	_QNQSVGNPEY_					0	0	0			REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.25439453125	2	568.25436	1134.49417	-0.35708	-0.00020291	0.032476	1.8455E-05	-0.32461	-0.00018446	568.2543314853896	30.972	0.68773	30.731	30.497	31.185	-0.24109					27	16	2	0	0	0	0.94316	1	2021	2021		51.193	1.6567	1	1338200	+		63438	36165	44670	44733	68646	68646					-0.0677011767240856
QNQTQLLHA	9	Unmodified	_QNQTQLLHA_					0	0	0			REV__ENST00000301490.8_2_11:67395419-67395788:-|nuORF	REV__ENST00000301490.8_2_11:67395419-67395788:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3115234375	2	526.777805	1051.54106	-1.6021	-0.00084394	3.3415	0.0017602	1.7394	0.00091626	526.7790467950504	20.317	0.34114	20.317	20.127	20.468	0					9	6	2	0	0	0	0.02435	1	525	525		42.396	5.9494	1	13046	+		63439	26195	44671	44734	68647	68647					0.017347866693853575
QNQTQLLHA	9	Unmodified	_QNQTQLLHA_					0	0	0			REV__ENST00000301490.8_2_11:67395419-67395788:-|nuORF	REV__ENST00000301490.8_2_11:67395419-67395788:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.777805	1051.54106	-0.71662	-0.0003775	3.0461	0.0016046	2.3295	0.0012271	526.7774716081298	20.504	0.19628	20.4	20.277	20.473	-0.10477	0.041139	-4.3301E-05	NaN	42.396	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7565.6	+		63440	26195	44671	44734							0.017347866693853575
QNRECHLVEI	10	Unmodified	_QNRECHLVEI_					0	0	0			REV__ENSG00000081913|ENST00000262719|PHLPP1	REV__ENSG00000081913|ENST00000262719|PHLPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2404479980469	3	414.208278	1239.60301	0.078884	3.2674E-05	2.434	0.0010082	2.5129	0.0010409	414.2106279997916	33.617	0.54773	33.674	33.423	33.971	0.056572					15	13	2	0	0	0	0.03519	1	2430	2430		44.377	22.597	1	56878	+		63441	20686	44672	44735	68648	68648					-0.007212299738057482
QNRGRRVM	8	Unmodified	_QNRGRRVM_					0	0	0		ENST00000332624.7_1_2:202316222-202316261:-|nuORF	ENST00000332624.7_1_2:202316222-202316261:-|nuORF	ENST00000332624.7_1_2:202316222-202316261:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.769287109375	2	508.780159	1015.54576	-0.1883	-9.5801E-05	2.4674	0.0012554	2.2791	0.0011596	508.7814419009112	42.03	0.78973	42.056	41.533	42.323	0.026012					49	22	4	0	0	0	0.027866	1	3797	3797		18.324	3.4595	1	1851500			63442	12360	44673	44736	68649	68649					0.038613923311459075
QNRHRKWYL	9	Unmodified	_QNRHRKWYL_					0	0	0			REV__ENSG00000091972|ENST00000315711|CD200	REV__ENSG00000091972|ENST00000315711|CD200	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.23687744140625	3	434.2389	1299.69487	-0.028613	-1.2425E-05	-4.0912	-0.0017766	-4.1198	-0.001789	434.2374714653068	72.548	1.8035	72.35	71.544	73.348	-0.19811					74	43	3	0	0	0	0.93097	1	8497	8497		30.318	5.1917	1	630000	+		63443	20918	44674	44737	68650	68650					0.05701241225551712
QNRKRPNT	8	Unmodified	_QNRKRPNT_					0	0	0			REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2821044921875	2	507.283589	1012.55262	2.5049	0.0012707	-3.0849	-0.0015649	-0.57993	-0.00029419	507.28211952136843	18.275	1.3273	18.275	17.94	19.268	0					60	26	5	0	0	0	0.99042	1	258	258		38.806	3.1879	1	2841700	+		63444	23718	44675	44738	68651	68651					0.046850284833681144
QNRLLKVK	8	Unmodified	_QNRLLKVK_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.82696533203125	2	499.827101	997.639649	0.38291	0.00019139	-1.1406	-0.00057008	-0.75764	-0.00037869	499.8265725967488	21.935	1.315	21.746	21.291	22.606	-0.18893					73	27	5	0	0	0	1.0239	1	730	730		33.516	3.0119	1	4886000	+		63445	36494	44676	44739	68652	68652					0.1407343470508522
QNRLLTQEV	9	Unmodified	_QNRLLTQEV_					0	0	0		ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	ENSG00000186193|ENST00000409687|SAPCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2816162109375	2	550.806562	1099.59857	-0.20838	-0.00011478	3.5786	0.0019711	3.3702	0.0018563	550.8083269413072	61.316	0.66252	61.11	60.889	61.551	-0.20599					35	15	3	0	0	0	0.024495	1	6914	6914		19.997	0	1	798090			63446	9528	44677	44740	68653	68653					0.052756288749378655
QNRLQFLE	8	Unmodified	_QNRLQFLE_					0	0	0			REV__ENSG00000103043|ENST00000261776|VAC14	REV__ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.8409423828125	2	524.282723	1046.55089	-0.28105	-0.00014735	2.5524	0.0013382	2.2713	0.0011908	524.2842057912309	46.925	0.92322	46.731	46.309	47.232	-0.19387					61	25	5	0	0	0	0.027866	1	4525	4525		18.324	3.4595	1	884500	+		63447	21348	44678	44741	68654	68654					0.02947974674748366
QNRLTATP	8	Unmodified	_QNRLTATP_					0	0	0			REV__nc|ENSG00000047648|O43182-3|ARHGAP6	REV__nc|ENSG00000047648|O43182-3|ARHGAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.21978759765625	2	450.748516	899.482479	-0.2706	-0.00012197	-0.038172	-1.7206E-05	-0.30877	-0.00013918	450.7485711913777	26.669	0.7236	26.501	26.085	26.809	-0.16816					34	17	3	0	0	0	0.027866	1	1357	1357		29.15	1.2673	1	144620	+		63448	36450	44679	44742	68655	68655					0.028717300948869706
QNRMPLTH	8	Unmodified	_QNRMPLTH_					0	0	0			REV__ENST00000556116.1_1_14:39308236-39410746:-|nuORF	REV__ENST00000556116.1_1_14:39308236-39410746:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.73486328125	2	498.755818	995.497083	-0.94821	-0.00047292	-2.5389	-0.0012663	-3.4871	-0.0017392	498.7542694611424	33.143	0.55737	32.977	32.679	33.236	-0.16565					21	13	2	0	0	0	0.027866	1	2290	2290		25.45	3.4903	1	67143	+		63449	35026	44680	44743	68656	68656					-0.0008452102860019295
QNRPFTILN	9	Unmodified	_QNRPFTILN_					0	0	0			REV__ACOT12|p.I303N|1|0.08|ENSG00000172497|chr5:81344907-81344907|A/T|missense_variant	REV__ACOT12|p.I303N|1|0.08|ENSG00000172497|chr5:81344907-81344907|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.2821655273438	2	551.803823	1101.59309	-0.46049	-0.0002541	0.79478	0.00043857	0.3343	0.00018447	551.8043422792862	61.515	0.72941	61.258	61.091	61.821	-0.25725					21	17	2	0	0	0	0.024447	1	6935	6935		40.778	16.575	1	156800	+		63450	19054	44681	44744	68657	68657					0.04635950083138596
QNRPPEVK	8	Unmodified	_QNRPPEVK_					0	0	0			REV__nc|ENSG00000167447|Q8ND04-3|SMG8	REV__nc|ENSG00000167447|Q8ND04-3|SMG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.7672119140625	2	484.269616	966.524678	-0.34077	-0.00016502	0.62435	0.00030235	0.28358	0.00013733	484.2695679842847	27.081	0.63508	26.839	26.571	27.207	-0.24217					24	14	3	0	0	0	0.027866	1	1501	1501		24.203	0	1	509290	+		63451	26141	44682	44745	68658	68658					0.04007705503283887
QNRQDLVK	8	Unmodified	_QNRQDLVK_					0	0	0		nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7775573730469	2	500.780348	999.546142	0.54601	0.00027343	-3.7006	-0.0018532	-3.1546	-0.0015798	500.778650183083	72.037	0.67697	72.037	71.377	72.054	0					30	17	2	0	0	0	0.027866	1	8698	8698		58.782	0	1	3158800			63452	2707	44683	44746	68659	68659					0.046350905319854974
QNRRRLLS	8	Unmodified	_QNRRRLLS_					0	0	0			REV__ENST00000524196.5_2_1:227063149-227069666:+|nuORF	REV__ENST00000524196.5_2_1:227063149-227069666:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	521.815056	1041.61556	0.14863	7.7557E-05	3.5386	0.0018465	3.6872	0.0019241	521.8163283564251	68.021	0.95007	68.04	67.549	68.499	0.018913					39	24	2	0	0	0	0.027866	1	8115	8115		30.504	0	1	314950	+		63453	34377	44684	44747	68660	68660					0.09641594271420217
QNRRSGAL	8	Unmodified	_QNRRSGAL_					0	0	0			REV__ENSG00000095015|ENST00000399503|MAP3K1	REV__ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.27838134765625	2	451.251757	900.488962	-0.069767	-3.1482E-05	3.6721	0.001657	3.6023	0.0016255	451.25330816913925	66.962	1.0287	66.962	66.461	67.49	0					46	25	3	0	0	0	0.027866	1	7967	7967		60.972	2.19	1	820560	+		63454	20955	44685	44748	68661	68661					0.034736680462856384
QNRSMEAHN	9	Unmodified	_QNRSMEAHN_					0	0	0		nc|ENSG00000160075|Q9NP77-2|SSU72;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3375854492188	2	543.740896	1085.46724	-0.98848	-0.00053747	-3.3271	-0.0018091	-4.3156	-0.0023466	543.7390866392753	48.416	0.39218	48.483	48.265	48.657	0.066799					18	10	2	0	0	0	0.024025	1	4876	4876		71.877	3.0906	1	94480			63455	6779	44686	44749	68662	68662					-0.07207504764596706
QNRVVRLF	8	Unmodified	_QNRVVRLF_					0	0	0			REV__ENSG00000169410|ENST00000618819|PTPN9	REV__ENSG00000169410|ENST00000618819|PTPN9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2822875976562	2	516.309075	1030.6036	0.27636	0.00014269	0.14909	7.6979E-05	0.42545	0.00021966	516.3085973182566	74.573	0.83315	74.314	74.071	74.904	-0.25887					26	19	2	0	0	0	0.027866	1	9151	9151		28.254	11.781	1	160030	+		63456	26365	44687	44750	68663	68663					0.08951977528226962
QNRVVRLF	8	Unmodified	_QNRVVRLF_					0	0	0			REV__ENSG00000169410|ENST00000618819|PTPN9	REV__ENSG00000169410|ENST00000618819|PTPN9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.309075	1030.6036	1.6038	0.00082804	0.61521	0.00031764	2.219	0.0011457	516.3088815196172	74.235	0.59412	74.235	73.999	74.593	0	-0.037546	-0.0017409	NaN	13.775	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161980	+		63457	26365	44687	44750							0.08951977528226962
QNRVVRLF	8	Unmodified	_QNRVVRLF_					0	0	0			REV__ENSG00000169410|ENST00000618819|PTPN9	REV__ENSG00000169410|ENST00000618819|PTPN9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.309075	1030.6036	-1.0882	-0.00056186	3.061	0.0015804	1.9728	0.0010186	516.3104378757188	74.26	0.51219	74.269	74.095	74.607	0.0096512	-0.0038387	0.0007847	NaN	13.775	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117240	+		63458	26365	44687	44750							0.08951977528226962
QNRYGGEYYDV	11	Unmodified	_QNRYGGEYYDV_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.73492431640625	3	455.201958	1362.58404	0.19279	8.7756E-05	-3.1858	-0.0014502	-2.9931	-0.0013624	455.20050627990275	32.935	1.1307	32.738	31.809	32.94	-0.1973					63	26	3	0	0	0	0.024723	1	2230	2230		22.562	3.2989	1	339020	+		63459	22530	44688	44751	68664	68664					-0.08274488063852914
QNSFFPAQL	9	Unmodified	_QNSFFPAQL_					0	0	0			REV__ENSG00000124089|ENST00000243911|MC3R	REV__ENSG00000124089|ENST00000243911|MC3R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2621459960938	2	526.263999	1050.51345	-0.61937	-0.00032595	0.26473	0.00013932	-0.35465	-0.00018664	526.2628841133152	55.954	1.289	55.954	55.319	56.608	0					135	35	5	0	0	0	0.23085	2	6197	6197;6209		84.916	7.5979	1	4080800	+		63460	22729	44689	44752	68665;68666	68665					-0.0097911659086094
QNSFFPAQL	9	Unmodified	_QNSFFPAQL_					0	0	0			REV__ENSG00000124089|ENST00000243911|MC3R	REV__ENSG00000124089|ENST00000243911|MC3R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2632446289062	2	526.263999	1050.51345	-0.6467	-0.00034033	-0.25702	-0.00013526	-0.90372	-0.00047559	526.2629032624011	55.827	1.5008	55.925	55.115	56.616	0.097893					138	40	5	0	0	0	0.50848	1	6107	6107		58.782	3.2778	1	4077300	+		63461	22729	44689	44752	68667	68667					-0.0097911659086094
QNSLLELFL	9	Unmodified	_QNSLLELFL_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8018798828125	2	538.802957	1075.59136	-0.4154	-0.00022382	-0.4631	-0.00024952	-0.8785	-0.00047334	538.8026564013173	93.815	3.0985	93.815	93.429	96.527	0					196	73	5	0	0	0	0.034181	1	11956	11956		138.24	13.648	1	13183000	+		63462	28595	44690	44753	68668	68668					0.05658896274530889
QNSLLELFL	9	Unmodified	_QNSLLELFL_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8029174804688	2	538.802957	1075.59136	-0.89027	-0.00047968	0.11297	6.0868E-05	-0.7773	-0.00041881	538.8029556954763	93.73	2.3545	93.726	93.41	95.765	-0.0042038					175	55	5	0	0	0	0.028071	1	11861	11861		143.11	15.645	1	13207000	+		63463	28595	44690	44753	68669	68669					0.05658896274530889
QNSLLELFL	9	Unmodified	_QNSLLELFL_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8029174804688	2	538.802957	1075.59136	-1.1978	-0.00064539	0.45553	0.00024544	-0.74228	-0.00039994	538.8031436333358	93.829	2.7283	93.834	93.391	96.119	0.0059814					181	64	5	0	0	0	0.028071	3	11856	11832;11856;11881		143.11	19.848	1	13029000	+		63464	28595	44690	44753	68670;68671;68672	68671					0.05658896274530889
QNSLLELFL	9	Unmodified	_QNSLLELFL_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8030395507812	2	538.802957	1075.59136	-1.3629	-0.00073432	1.0744	0.00057889	-0.28846	-0.00015542	538.8033452203512	93.727	1.67	93.587	93.135	94.805	-0.13995					102	38	4	0	0	0	0.096521	2	11523	11523;11535		111.65	6.9017	1	2962700	+		63465	28595	44690	44753	68673;68674	68673					0.05658896274530889
QNSLLELFL	9	Unmodified	_QNSLLELFL_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8032836914062	2	538.802957	1075.59136	-0.086687	-4.6707E-05	-0.31401	-0.00016919	-0.4007	-0.0002159	538.8026445515942	93.684	1.7077	93.562	93.234	94.942	-0.12215					106	39	4	0	0	0	0.15029	2	11527	11527;11586		99.375	3.1845	1	3274100	+		63466	28595	44690	44753	68675;68676	68675					0.05658896274530889
QNSLLELFL	9	Unmodified	_QNSLLELFL_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8030395507812	2	538.802957	1075.59136	-0.88387	-0.00047623	0.52215	0.00028133	-0.36172	-0.0001949	538.8030703617362	93.776	1.626	93.628	93.217	94.843	-0.14758					107	37	4	0	0	0	0.15029	1	11527	11527		99.375	0.74558	1	3298000	+		63467	28595	44690	44753	68677	68677					0.05658896274530889
QNSLPPHLL	9	Unmodified	_QNSLPPHLL_					0	0	0		ZFHX4|p.Q2489H|1|0.37|ENSG00000091656|chr8:76854388-76854388|G/T|missense_variant	ZFHX4|p.Q2489H|1|0.37|ENSG00000091656|chr8:76854388-76854388|G/T|missense_variant	ZFHX4|p.Q2489H|1|0.37|ENSG00000091656|chr8:76854388-76854388|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.8088684082031	2	509.787641	1017.56073	0.97604	0.00049757	-0.020955	-1.0683E-05	0.95509	0.00048689	510.289851593195	18.103	0.44207	17.947	17.755	18.197	-0.15637					10	8	2	0	0	0	0.024436	1	264	264		47.916	1.9636	1	11935			63468	38174	44691	44754	68678	68678					0.052651626801548446
QNSLSLLEA	9	Unmodified	_QNSLSLLEA_					0	0	0		ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.28143310546875	2	487.761289	973.508025	-0.77745	-0.00037921	0.83471	0.00040714	0.057263	2.7931E-05	487.7615708220416	57.315	0.26125	57.411	57.204	57.465	0.095306					9	6	2	0	0	0	0.024427	1	6371	6371		26.693	0	1	114680			63469	4603	44692	44755	68679	68679					0.02021159826665553
QNSPMLLL	8	Unmodified	_QNSPMLLL_					0	0	0			REV__ENSG00000035403|ENST00000211998|VCL	REV__ENSG00000035403|ENST00000211998|VCL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2193298339844	2	458.252046	914.489538	-0.20437	-9.3652E-05	0.55642	0.00025498	0.35205	0.00016133	458.2525000693617	40.356	0.33081	40.131	39.965	40.296	-0.225					11	8	2	0	0	0	0.027866	1	3484	3484		38.806	14.603	1	195490	+		63470	20060	44693	44756	68680	68680					0.028873266511141082
QNSPRRPL	8	Unmodified	_QNSPRRPL_					0	0	0			REV__ENST00000467576.1_1_6:31743192-31744939:-|nuORF	REV__ENST00000467576.1_1_6:31743192-31744939:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.2737121582031	2	484.275232	966.535912	-0.22327	-0.00010812	3.2464	0.0015722	3.0232	0.001464	484.27663771437153	34.294	0.57602	34.087	33.75	34.326	-0.20696					38	14	4	0	0	0	0.81662	1	2535	2535		57.811	0.35863	1	2954800	+		63471	33078	44694	44757	68681	68681					0.05130527597430046
QNSRLLFF	8	Unmodified	_QNSRLLFF_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.7799682617188	2	512.782359	1023.55016	-0.61545	-0.00031559	-3.5	-0.0017947	-4.1154	-0.0021103	512.7804103470908	31.81	0.47903	31.81	31.591	32.07	0					37	11	4	0	0	0	0.53523	1	2162	2162		82.305	4.9875	1	2026600			63472	10291	44695	44758	68682	68682					0.03933180025705951
QNSVLYID	8	Unmodified	_QNSVLYID_					0	0	0			REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	REV__sp|P03212|GL_EBVB9EnvelopeglycoproteinLOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gLPE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.24957275390625	2	476.242732	950.470912	1.2847	0.00061181	4.4208	0.0021054	5.7055	0.0027172	476.24432675238006	49.585	0.69236	49.585	49.039	49.731	0					22	18	2	0	0	0	0.027866	1	5119	5119		38.806	20.482	1	189530	+		63473	37540	44696	44759	68683	68683					-0.00630511719111837
QNTGVVEV	8	Unmodified	_QNTGVVEV_					0	0	0		ENSG00000176946|ENST00000407315|THAP4;nc|ENSG00000176946|Q8WY91-2|THAP4	ENSG00000176946|ENST00000407315|THAP4	ENSG00000176946|ENST00000407315|THAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5929870605469	2	423.2218	844.429047	0.19272	8.1564E-05	1.9157	0.00081076	2.1084	0.00089233	423.22254817515835	50.398	0.66598	50.479	50.148	50.814	0.08099					29	19	2	0	0	0	0.027866	1	5178	5178		16.473	0.83134	1	270950			63474	8691	44697	44760	68684	68684					0.0006093259238468818
QNTKKKSL	8	Unmodified	_QNTKKKSL_					0	0	0		ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant;nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	ARHGAP20|p.L923Yfs*5|1|0.25|ENSG00000137727|chr11:110580178-110580178|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.26983642578125	2	473.787641	945.56073	0.072995	3.4584E-05	0.17676	8.3745E-05	0.24975	0.00011833	473.7876611361779	26.945	0.41082	26.932	26.621	27.032	-0.012983					12	9	2	0	0	0	0.027866	1	1385	1385		29.15	0	1	139810			63475	121	44698	44761	68685	68685					0.08577162680126094
QNTKVWII	8	Unmodified	_QNTKVWII_					0	0	0			REV__ENSG00000165819|ENST00000298717|METTL3	REV__ENSG00000165819|ENST00000298717|METTL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.3030090332031	2	501.292559	1000.57057	-0.43473	-0.00021793	-3.2839	-0.0016462	-3.7187	-0.0018641	501.2903625502679	25.539	0.12334	25.368	25.282	25.406	-0.17151					4	2	2	0	0	0	0.027866	1	1197	1197		12.959	0	1	15507	+		63476	25935	44699	44762	68686	68686					0.07030350685522535
QNTLNDTLI	9	Unmodified	_QNTLNDTLI_					0	0	0			REV__ENST00000488127.1_1_1:25880414-25890333:+|nuORF	REV__ENST00000488127.1_1_1:25880414-25890333:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2714233398438	2	516.272021	1030.52949	-0.84464	-0.00043606	0.31475	0.0001625	-0.52989	-0.00027357	516.2721239262532	48.989	1.058	48.888	48.618	49.676	-0.1008					60	27	4	0	0	0	0.28753	1	4900	4900		77.318	5.4401	1	3458600	+		63477	25162	44700	44763	68687	68687					0.01544544855391905
QNTSLRNAIAQ	11	Unmodified	_QNTSLRNAIAQ_					0	0	0		ENSG00000176155|ENST00000694881|CCDC57;nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57	ENSG00000176155|ENST00000694881|CCDC57	ENSG00000176155|ENST00000694881|CCDC57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58746337890625	3	405.886192	1214.63675	0.44624	0.00018112	3.7513	0.0015226	4.1975	0.0017037	405.8873889889904	25.72	0.69089	25.549	25.205	25.896	-0.17078					46	17	5	0	0	0	0.024758	1	1210	1210		41.109	2.3554	1	311460			63478	8616	44701	44764	68688	68688					0.038015147896203416
QNTVPDIGKV	10	Unmodified	_QNTVPDIGKV_					0	0	0			REV__GPC5|p.I455T|1|0.27|ENSG00000179399|chr13:91908020-91908020|T/C|missense_variant	REV__GPC5|p.I455T|1|0.27|ENSG00000179399|chr13:91908020-91908020|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7981567382812	2	535.795663	1069.57677	-0.25573	-0.00013702	4.1602	0.002229	3.9045	0.002092	535.7977510474138	89.081	1.3287	89.081	88.725	90.054	0					73	31	4	0	0	0	0.54901	1	11250	11250		82.75	3.0379	1	2984600	+		63479	36077	44702	44765	68689	68689					0.044768241263682285
QNVFSLQNH	9	Unmodified	_QNVFSLQNH_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8350830078125	2	543.76998	1085.52541	-1.713	-0.00093147	-1.4353	-0.00078046	-3.1482	-0.0017119	543.7691616748557	51.484	0.33804	51.571	51.411	51.749	0.087006					14	9	2	0	0	0	0.024427	1	5407	5407		34.173	3.6689	1	127600	+		63480	27297	44703	44766	68690	68690					-0.013934998476770488
QNVHNPIR	8	Unmodified	_QNVHNPIR_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2587890625	2	489.267407	976.520262	0.18735	9.1666E-05	2.8054	0.0013726	2.9927	0.0014642	489.26859167383674	69.854	0.2855	69.854	69.669	69.954	0					10	6	2	0	0	0	0.027866	1	8420	8420		33.516	0	1	107990			63481	9006	44704	44767	68691	68691					0.031062410803770035
QNVKQMALA	9	Unmodified	_QNVKQMALA_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.306884765625	2	501.773677	1001.5328	1.2519	0.00062815	-1.011	-0.00050731	0.24084	0.00012085	501.7729387224097	23.219	0.6027	23.028	22.758	23.36	-0.19117					27	13	3	0	0	0	0.024541	1	875	875		17.365	0	1	327400	+		63482	28456	44705	44768	68692	68692					0.03209516428398729
QNVLIHFTS	9	Unmodified	_QNVLIHFTS_					0	0	0			REV__ENST00000498706.5_1_2:64779989-64780061:+|nuORF	REV__ENST00000498706.5_1_2:64779989-64780061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.73828125	2	529.785099	1057.55564	-1.3094	-0.00069372	-1.5029	-0.00079621	-2.8123	-0.0014899	529.7844758170137	21.282	0.24592	21.069	20.921	21.167	-0.2128					6	4	2	0	0	0	0.024541	1	625	625		11.511	0	1	8373.6	+		63483	33888	44706	44769	68693	68693					0.029168588175252808
QNVPPQFVQ	9	Unmodified	_QNVPPQFVQ_					0	0	0			REV__ENST00000440595.5_1_20:32580682-32582022:-|nuORF	REV__ENST00000440595.5_1_20:32580682-32582022:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.3261108398438	2	528.777274	1055.53999	-0.15772	-8.3401E-05	1.4357	0.00075918	1.278	0.00067578	529.2788017794875	66.034	0.19185	66.034	65.913	66.105	0					4	2	2	0	0	0	0.024457	1	7859	7859		21.96	0	1	98745	+		63484	32530	44707	44770	68694	68694					0.01444572300465552
QNYDIPNL	8	Unmodified	_QNYDIPNL_					0	0	0		ENST00000603395.1_1_7:56671114-56671243:+|nuORF;ENSG00000243317|ENST00000507606|STMP1	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	ENST00000603395.1_1_7:56671114-56671243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.76837158203125	2	488.740357	975.46616	-0.99414	-0.00048588	0.37275	0.00018218	-0.62138	-0.0003037	488.7403932265352	37.719	0.4517	37.719	37.45	37.902	0					18	12	2	0	0	0	0.027866	1	3073	3073		30.504	0	1	122350			63485	17545	44708	44771	68695	68695					-0.022553958618800607
QNYFQIIK	8	Unmodified	_QNYFQIIK_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.767333984375	2	527.290017	1052.56548	-1.9094	-0.0010068	-2.1	-0.0011073	-4.0094	-0.0021141	527.2886277815746	30.238	0.69804	30.238	29.936	30.634	0					24	16	2	0	0	0	0.027866	1	1887	1887		40.573	10.069	1	479930	+		63486	27801	44709	44772	68696	68696					0.04130046822888289
QNYFWLFPGAF	11	Unmodified	_QNYFWLFPGAF_					0	0	0		nc|ENSG00000171243|Q6X4U4-2|SOSTDC1	nc|ENSG00000171243|Q6X4U4-2|SOSTDC1	nc|ENSG00000171243|Q6X4U4-2|SOSTDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.260009765625	3	463.892396	1388.65536	-0.30062	-0.00013946	3.6006	0.0016703	3.3	0.0015308	464.2270221579509	20.179	0.14788	20.074	19.981	20.129	-0.10477					4	2	2	0	0	0	0.024821	1	485	485		14.086	0	1	7501.9			63487	18513	44710	44773	68697	68697					-0.0234232356854136
QNYHTVLLSP	10	Unmodified	_QNYHTVLLSP_					0	0	0			REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.2319946289062	2	586.308938	1170.60332	-0.62329	-0.00036544	3.7192	0.0021806	3.096	0.0018152	586.3110402110046	49.226	0.53475	49.044	48.809	49.344	-0.18206					23	13	3	0	0	0	0.03519	1	4897	4897		27.047	0	1	239110	+		63488	35621	44711	44774	68698	68698					0.024845130177027386
QNYKLGKVI	9	Unmodified	_QNYKLGKVI_					0	0	0			REV__nc|ENSG00000196405|Q9UI08-4|EVL	REV__nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2919921875	2	531.818941	1061.62333	-0.43845	-0.00023318	0.8491	0.00045157	0.41065	0.00021839	531.8192369944959	62.308	0.46855	62.05	61.782	62.25	-0.25824					23	11	3	0	0	0	0.024541	1	6951	6951		17.365	0	1	262770	+		63489	28176	44712	44775	68699	68699					0.09498308748334239
QNYPGSYLP	9	Unmodified	_QNYPGSYLP_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7770385742188	2	519.748182	1037.48181	-1.4009	-0.00072813	0.11937	6.2041E-05	-1.2816	-0.00066609	519.7481619809796	30.827	3.1141	30.827	29.186	32.3	0					138	76	2	0	0	0	0.024319	1	1862	1862		24.519	0	1	428540			63490	8976	44713	44776	68700	68700					-0.03543109344809636
QNYRVESR	8	Unmodified	_QNYRVESR_					0	0	0			REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF	REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2847900390625	2	526.267604	1050.52066	-0.3701	-0.00019477	3.0605	0.0016106	2.6904	0.0014159	526.2689013794172	66.434	0.74554	66.189	65.732	66.477	-0.24517					36	19	4	0	0	0	0.027866	1	7577	7577		14.865	0	1	1384500	+		63491	34188	44714	44777	68701	68701					-0.0025838399044459948
QNYTITPN	8	Unmodified	_QNYTITPN_					0	0	0		PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant;ENSG00000113205|ENST00000231130|PCDHB3	PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant	PCDHB3|p.P221Lfs*8|1|0.6|ENSG00000113205|chr5:141101307-141101307|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.29010009765625	2	475.732532	949.45051	0.69656	0.00033138	0.92146	0.00043837	1.618	0.00076974	475.7322551596807	58.744	0.32341	58.835	58.708	59.032	0.091221					14	8	2	0	0	0	0.027866	1	6584	6584		45.952	0	1	118030			63492	3267	44715	44778	68702	68702					-0.02623682378907688
QPAALARGALC	11	Unmodified	_QPAALARGALC_					0	0	0			REV__ENSG00000113140|ENST00000231061|SPARC	REV__ENSG00000113140|ENST00000231061|SPARC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7595825195312	2	535.792401	1069.57025	-0.83809	-0.00044904	-3.831	-0.0020526	-4.669	-0.0025016	536.2926002920918	42.208	0.28055	41.976	41.837	42.117	-0.23186					10	7	2	0	0	0	0.024738	1	3757	3757		26.693	0	1	187480	+		63493	22043	44716	44779	68703	68703					0.03824607694014048
QPAAVLLL	8	Unmodified	_QPAAVLLL_					0	0	0		CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.218994140625	2	412.765646	823.516739	-0.29139	-0.00012028	4.2893	0.0017705	3.9979	0.0016502	412.7672153033688	41.684	1.5758	41.456	40.366	41.941	-0.2278					56	41	2	0	0	0	0.027866	1	3576	3576		15.636	0	1	179670			63494	229	44717	44780	68704	68704					0.09792178253815109
QPADQEENEN	10	Unmodified	_QPADQEENEN_					0	0	0			REV__LMAN2L-FAM178B|2|fusion	REV__LMAN2L-FAM178B|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.771728515625	2	587.236364	1172.45817	-0.5069	-0.00029767	0.28546	0.00016763	-0.22144	-0.00013004	587.7378669659009	32.885	1.2626	32.692	31.641	32.904	-0.19261					50	29	3	0	0	0	0.03519	1	2310	2310		25.574	1.0549	1	243360	+		63495	19144	44718	44781	68705	68705					-0.12115619639939723
QPAEPPVLV	9	Unmodified	_QPAEPPVLV_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.271240234375	2	475.271293	948.528032	-0.56657	-0.00026927	0.69093	0.00032838	0.12436	5.9104E-05	475.27145252332144	80.123	0.96736	79.972	79.631	80.598	-0.15169					64	22	4	0	0	0	0.27161	1	9904	9904		79.451	13.022	1	2754800	+		63496	22888	44719	44782	68706	68706					0.05170955557287016
QPAKRRLP	8	Unmodified	_QPAKRRLP_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.7898254394531	2	483.303793	964.593033	1.7549	0.00084816	-2.1504	-0.0010393	-0.39547	-0.00019113	483.30261696531693	36.674	0.44472	36.465	36.24	36.685	-0.2092					14	10	2	0	0	0	0.027866	1	2878	2878		18.324	5.3652	1	102670	+		63497	26205	44720	44783	68707	68707					0.10931994873783424
QPAPAGFCL	9	Unmodified	_QPAPAGFCL_					0	0	0			REV__ENST00000520447.1_1_3:9433458-9439148:-|nuORF	REV__ENST00000520447.1_1_3:9433458-9439148:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.777587890625	2	452.223288	902.432024	0.073921	3.3429E-05	2.4742	0.0011189	2.5481	0.0011523	452.22420809094973	41.105	0.56433	41.128	40.864	41.429	0.023006					23	15	2	0	0	0	0.024357	1	3653	3653		19.36	0	1	106900	+		63498	33451	44721	44784	68708	68708					-0.02309515554452446
QPAPTKGQT	9	Unmodified	_QPAPTKGQT_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.28466796875	2	464.248349	926.482145	1.2759	0.00059236	-0.010021	-4.6523E-06	1.2659	0.00058771	464.2483806942099	24.999	0.52222	24.828	24.471	24.993	-0.17151					22	11	3	0	0	0	0.024405	1	1091	1091		20.947	0	1	106970			63499	3671	44722	44785	68709	68709					0.01596310375032317
QPAQHRPM	8	Unmodified	_QPAQHRPM_					0	0	0		OR51S1|p.L63Q|1|0.2|ENSG00000176922|chr11:4849021-4849021|A/T|missense_variant	OR51S1|p.L63Q|1|0.2|ENSG00000176922|chr11:4849021-4849021|A/T|missense_variant	OR51S1|p.L63Q|1|0.2|ENSG00000176922|chr11:4849021-4849021|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7838134765625	2	482.742711	963.470869	0.44379	0.00021424	1.7727	0.00085575	2.2165	0.00107	482.74377115162207	72.46	0.36142	72.47	72.25	72.611	0.0097733					12	8	2	0	0	0	0.027866	1	8760	8760		12.959	0	1	126280			63500	18921	44723	44786	68710	68710					-0.012327902000834001
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2478332519531	2	460.247818	918.481082	0.876	0.00040318	-0.71224	-0.00032781	0.16376	7.5371E-05	460.24739003544744	71.004	1.4212	71.004	70.483	71.904	0					87	35	4	0	0	0	0.012289	3	8584	8572;8584;8595		227.71	65.407	1	6287900			63501	9935;15444	44724	44787	68711;68712;68713	68712					0.01858096006139931
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2485656738281	2	460.247818	918.481082	0.92026	0.00042355	-0.708	-0.00032586	0.21226	9.7691E-05	460.24742218304556	71.305	1.3503	71.017	70.633	71.983	-0.28857					78	34	4	0	0	0	0.014988	4	8583	8583;8594;8606;8620		207.6	45.298	1	6076100			63502	9935;15444	44724	44787	68714;68715;68716;68717	68714					0.01858096006139931
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2480773925781	2	460.247818	918.481082	0.47882	0.00022037	-0.26121	-0.00012022	0.21761	0.00010015	460.2476134953764	71.023	1.8101	71.034	70.68	72.49	0.010735					99	46	5	0	0	0	0.014013	4	8538	8501;8511;8524;8538		217.64	55.337	1	6308900			63503	9935;15444	44724	44787	68718;68719;68720;68721	68721					0.01858096006139931
QPASQLPR	8	Unmodified	_QPASQLPR_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.28509521484375	2	448.751059	895.487565	-0.60696	-0.00027237	0.69999	0.00031412	0.093033	4.1748E-05	448.75124725788464	34.721	0.75772	34.771	34.404	35.162	0.050251					32	19	2	0	0	0	0.027866	1	2563	2563		40.778	3.6191	1	271550			63504	18433	44725	44788	68722	68722					0.035640339575252256
QPASSFSR	8	Unmodified	_QPASSFSR_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.2198486328125	2	440.219591	878.42463	-0.26969	-0.00011872	0.63303	0.00027867	0.36334	0.00015995	440.2197337612727	26.284	1.322	26.261	25.909	27.231	-0.023088					96	32	4	0	0	0	0.99042	1	1315	1315		38.806	0	1	2884000			63505	2963	44726	44789	68723	68723					-0.01944531830520191
QPCFRHVW	8	Unmodified	_QPCFRHVW_					0	0	0			REV__ENSG00000183778|ENST00000684187|B3GALT5	REV__ENSG00000183778|ENST00000684187|B3GALT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7371215820312	2	536.760904	1071.50725	0.97653	0.00052416	4.1616	0.0022338	5.1382	0.002758	536.7629325294319	17.537	0.29815	17.383	17.259	17.557	-0.15403					10	5	3	0	0	0	0.027866	1	181	181		12.959	0	1	84547	+		63506	27609	44727	44790	68724	68724					-0.025639133033564576
QPCIDLIEAKL	11	Unmodified	_QPCIDLIEAKL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;MYO5B|p.N568Tfs*13|1|0.44|ENSG00000167306|chr18:49953309-49953309|T/-|frameshift_variant	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.8987731933594	3	414.89693	1241.66896	-0.59712	-0.00024774	3.9897	0.0016553	3.3926	0.0014076	414.89867835631566	25.215	1.3769	25.181	24.815	26.192	-0.034395					96	32	6	0	0	0	0.86757	1	1172	1172		53.597	11.259	1	11333000			63507	7670	44728	44791	68725	68725					0.05779166148386139
QPCLGPPTPRA	11	Unmodified	_QPCLGPPTPRA_					0	0	0		ENST00000563642.6_1_16:1495787-1496063:-|nuORF	ENST00000563642.6_1_16:1495787-1496063:-|nuORF	ENST00000563642.6_1_16:1495787-1496063:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.82958984375	2	568.797683	1135.58081	-0.79283	-0.00045096	-3.6136	-0.0020554	-4.4064	-0.0025064	569.2979604225154	49.841	0.43256	49.841	49.62	50.052	0					15	10	2	0	0	0	0.024736	1	5201	5201		22.58	6.1065	1	130140			63508	16874	44729	44792	68726	68726					0.018445903484234805
QPCPADTEV	9	Carbamidomethyl (C)	_QPC(Carbamidomethyl (C))PADTEV_	QPC(1)PADTEV		QPC(100)PADTEV		0	1	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.768798828125	2	508.721307	1015.42806	-0.58359	-0.00029689	1.2351	0.00062835	0.65156	0.00033146	509.2250277347768	22.735	0.46173	22.735	22.525	22.987	0					12	9	2	0	0	0	0.023061	1	852	852		101.6	62.795	1	17170			63509	4145	44730	44793	68727	68727	51				-0.07903649838829097
QPCPADTEV	9	Carbamidomethyl (C)	_QPC(Carbamidomethyl (C))PADTEV_	QPC(1)PADTEV		QPC(74)PADTEV		0	1	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7687683105469	2	508.721307	1015.42806	-0.40254	-0.00020478	3.3376	0.0016979	2.9351	0.0014931	509.22592435185	22.741	0.60408	22.666	22.317	22.921	-0.075296					14	12	2	0	0	0	0.023837	1	847	847		74.255	35.449	1	39831			63510	4145	44730	44793	68728	68728	51				-0.07903649838829097
QPCRQPHCMT	10	Carbamidomethyl (C),Oxidation (M)	_QPC(Carbamidomethyl (C))RQPHCM(Oxidation (M))T_	QPC(0.962)RQPHC(0.038)MT	QPCRQPHCM(1)T	QPC(14)RQPHC(-14)MT	QPCRQPHCM(40)T	0	1	1			REV__ENSG00000106823|ENST00000344604|ECM2	REV__ENSG00000106823|ENST00000344604|ECM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.1819763183594	3	425.179337	1272.51618	0.20628	8.7706E-05	4.1694	0.0017727	4.3757	0.0018604	425.18178910442623	34.745	1.6206	34.529	34.188	35.809	-0.21555					151	41	7	0	0	0	1.0447	1	2572	2572		40.058	10.888	2	52225000	+		63511	21647	44731	44794	68729	68729	274	656			-0.10917675791529291
QPCSSKALPPT	11	Unmodified	_QPCSSKALPPT_					0	0	0		ENST00000555003.5_1_9:34658586-34660388:+|nuORF	ENST00000555003.5_1_9:34658586-34660388:+|nuORF	ENST00000555003.5_1_9:34658586-34660388:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.805908203125	2	564.789524	1127.56449	-1.1893	-0.00067171	1.3602	0.00076825	0.17093	9.6537E-05	565.291897379432	56.187	0.18454	56.285	56.136	56.321	0.097897					5	4	2	0	0	0	0.02478	1	6173	6173		47.96	5.5634	1	77650			63512	16669	44732	44795	68730	68730					0.005814643916892237
QPCSVGPALS	10	Unmodified	_QPCSVGPALS_					0	0	0			REV__ENST00000529280.5_1_11:74992876-74995312:-|nuORF	REV__ENST00000529280.5_1_11:74992876-74995312:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7358703613281	2	479.73676	957.458967	1.0655	0.00051115	-4.199	-0.0020144	-3.1335	-0.0015032	479.7344760086726	60.053	1.9295	59.856	59.38	61.309	-0.19742					134	48	5	0	0	0	0.69662	1	6695	6695		67.494	11.989	1	22815000	+		63513	34512	44733	44796	68731	68731					-0.021464517339381928
QPDAKKYANG	10	Unmodified	_QPDAKKYANG_					0	0	0			REV__ENST00000487502.1_1_20:23377670-23402039:-|nuORF	REV__ENST00000487502.1_1_20:23377670-23402039:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.9130859375	2	546.277638	1090.54072	-0.83816	-0.00045787	-2.6422	-0.0014433	-3.4803	-0.0019012	546.2762322921217	27.463	0.4706	27.295	27.099	27.57	-0.16816					13	10	2	0	0	0	0.03519	1	1488	1488		23.523	14.7	1	57843	+		63514	22846	44734	44797	68732	68732					-0.0009263305048534676
QPDAKKYANG	10	Unmodified	_QPDAKKYANG_					0	0	0			REV__ENST00000487502.1_1_20:23377670-23402039:-|nuORF	REV__ENST00000487502.1_1_20:23377670-23402039:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.277638	1090.54072	-0.36791	-0.00020098	-2.443	-0.0013346	-2.8109	-0.0015355	546.2762180802451	27.703	0.43113	27.461	27.249	27.68	-0.24217	0.083002	9.7604E-05	NaN	23.523	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55272	+		63515	22846	44734	44797							-0.0009263305048534676
QPDIRCPIP	9	Unmodified	_QPDIRCPIP_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7919311523438	2	519.773677	1037.5328	-0.61649	-0.00032044	-2.599	-0.0013509	-3.2155	-0.0016713	519.7719489574713	53.66	0.52704	53.756	53.444	53.971	0.095669					32	14	3	0	0	0	0.024477	1	5768	5768		20.947	7.9877	1	480420			63516	9787	44735	44798	68733	68733					0.015535164283846825
QPDLIDLV	8	Unmodified	_QPDLIDLV_					0	0	0			REV__ENSG00000229544|ENST00000451024|NKX1-2	REV__ENSG00000229544|ENST00000451024|NKX1-2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.7590637207031	2	456.755475	911.496398	1.4129	0.00064535	3.2543	0.0014864	4.6672	0.0021317	456.75687407002334	23.11	0.63018	22.919	22.617	23.248	-0.19117					36	13	4	0	0	0	0.027866	1	894	894		14.664	0	1	1666600	+		63517	28889	44736	44799	68734	68734					0.03710962803336315
QPDLLLSSF	9	Unmodified	_QPDLLLSSF_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8857421875	2	510.274032	1018.53351	0.075428	3.8489E-05	0.59633	0.00030429	0.67176	0.00034278	510.2744208530767	99.174	0.62029	99.174	99.001	99.621	0					17	13	2	0	0	0	0.018452	1	12713	12713		122.18	36.817	1	39116	+		63518	36013	44737	44800	68735	68735					0.024986343491036678
QPDLLLSSF	9	Unmodified	_QPDLLLSSF_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.274032	1018.53351	0.051153	2.6102E-05	1.4955	0.00076311	1.5466	0.00078921	510.27450818663453	99.164	0.48843	99.175	98.913	99.401	0.010239	0.026308	0.00066122	NaN	122.18	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22429	+		63519	36013	44737	44800							0.024986343491036678
QPDLLLSSF	9	Unmodified	_QPDLLLSSF_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|1|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.274032	1018.53351	0.79205	0.00040416	0.4724	0.00024106	1.2645	0.00064522	510.27371174677774	99.221	0.56775	99.097	98.869	99.437	-0.12459	-0.051638	-0.00038288	NaN	122.18	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50436	+		63520	36013	44737	44800							0.024986343491036678
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8219604492188	2	570.822212	1139.62987	-0.72362	-0.00041306	-0.091169	-5.2042E-05	-0.81479	-0.0004651	570.8222005781987	51.853	1.6926	51.853	51.431	53.124	0					140	45	6	0	0	0	0.52765	4	5534	5522;5534;5547;5560		85.161	12.717	1	15201000			63521	2644	44738	44801	68736;68737;68738;68739	68737					0.06564201909031908
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.8219604492188	2	570.822212	1139.62987	-0.40014	-0.00022841	-0.477	-0.00027228	-0.87714	-0.00050069	570.8219979013844	52.005	1.8327	51.858	51.3	53.132	-0.14735					152	49	6	0	0	0	0.57594	4	5546	5499;5511;5534;5546		79.713	25.507	1	14745000			63522	2644	44738	44801	68740;68741;68742;68743	68743					0.06564201909031908
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.8216552734375	2	570.822212	1139.62987	-1.5796	-0.00090164	0.7001	0.00039963	-0.87945	-0.00050201	570.8226706889576	51.715	1.7414	51.802	51.411	53.152	0.087006					142	46	6	0	0	0	0.32213	6	5447	5413;5424;5436;5447;5459;5472		106.68	31.743	1	14874000			63523	2644	44738	44801	68744;68745;68746;68747;68748;68749	68747					0.06564201909031908
QPDSEYKIS	9	Unmodified	_QPDSEYKIS_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2464599609375	2	533.756204	1065.49785	-0.58769	-0.00031368	-1.9638	-0.0010482	-2.5515	-0.0013619	533.7551080098724	33.891	1.0918	33.887	33.599	34.691	-0.0045624					48	27	3	0	0	0	0.023837	1	2559	2559		45.972	0	1	994400			63524	9677	44739	44802	68750	68750					-0.03227447898552782
QPDSRERRA	9	Unmodified	_QPDSRERRA_					0	0	0			REV__ENST00000504743.1_1_4:2343156-2366458:-|nuORF	REV__ENST00000504743.1_1_4:2343156-2366458:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.806640625	2	557.789235	1113.56392	-0.61783	-0.00034462	-1.123	-0.0006264	-1.7408	-0.00097102	557.7924388307744	57.86	0.51053	57.626	57.312	57.822	-0.23363					33	12	4	0	0	0	0.67687	1	6349	6349		47.657	1.2006	1	2263000	+		63525	33991	44740	44803	68751	68751					0.011678057868493852
QPDSSLEILPE	11	Unmodified	_QPDSSLEILPE_					0	0	0		ENSG00000104946|ENST00000221543|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF;ENST00000600354.1_1_19:50390695-50391878:+|nuORF	ENSG00000104946|ENST00000221543|TBC1D17	ENSG00000104946|ENST00000221543|TBC1D17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.509765625	3	409.874959	1226.60305	0.15728	6.4464E-05	-2.1296	-0.00087286	-1.9723	-0.0008084	409.874013258737	28.236	0.68584	28.236	27.804	28.49	0					32	16	3	0	0	0	0.024763	1	1645	1645		49.466	8.3858	1	284710			63526	2622	44741	44804	68752	68752					-0.0011895149282281636
QPDTEITVA	9	Unmodified	_QPDTEITVA_					0	0	0			REV__ENSG00000131050|ENST00000354932|BPIFA2	REV__ENSG00000131050|ENST00000354932|BPIFA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.28741455078125	2	487.245472	972.476391	-0.39244	-0.00019121	2.4668	0.0012019	2.0744	0.0010107	487.24631877485405	29.076	0.73353	28.903	28.55	29.284	-0.17258					36	16	4	0	0	0	0.023817	1	1757	1757		60.972	15.02	1	303680	+		63527	23185	44742	44805	68753	68753					-0.010948329272878254
QPDTSVGSH	9	Unmodified	_QPDTSVGSH_					0	0	0			REV__nc|ENSG00000211751|P01850|TRBC1	REV__nc|ENSG00000211751|P01850|TRBC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.21136474609375	2	464.211963	926.409374	0.20839	9.6736E-05	-0.028781	-1.336E-05	0.17961	8.3376E-05	464.21178265087366	103.02	0.48474	102.85	102.64	103.12	-0.17034					14	11	2	0	0	0	0.024523	1	12800	12800		29.15	3.6994	1	247930	+		63528	37105	44743	44806	68754	68754					-0.05677443418369421
QPDTSVGSH	9	Unmodified	_QPDTSVGSH_					0	0	0			REV__nc|ENSG00000211751|P01850|TRBC1	REV__nc|ENSG00000211751|P01850|TRBC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.211963	926.409374	0.39443	0.0001831	-0.31881	-0.000148	0.075624	3.5106E-05	464.21175900834226	102.89	0.56668	102.77	102.54	103.1	-0.12724	-0.037219	-0.00027547	NaN	27.882	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210700	+		63529	37105	44743	44806							-0.05677443418369421
QPEEWKGGIQH	11	Unmodified	_QPEEWKGGIQH_					0	0	0		ENSG00000174776|ENST00000682715|WDR49;nc|ENSG00000174776|Q8IV35-2|CFAP337;nc|ENSG00000174776|Q8IV35-3|CFAP337	ENSG00000174776|ENST00000682715|WDR49	ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.88238525390625	3	436.882559	1307.62585	-0.31435	-0.00013733	-2.5491	-0.0011137	-2.8635	-0.001251	436.8819152819592	39.747	2.8653	39.524	39.149	42.015	-0.22311					144	75	2	0	0	0	0.85525	1	3381	3381		54.343	5.7418	1	129380000			63530	8495	44744	44807	68755	68755					-0.01565887584661141
QPEEWKGGIQH	11	Unmodified	_QPEEWKGGIQH_					0	0	0		ENSG00000174776|ENST00000682715|WDR49;nc|ENSG00000174776|Q8IV35-2|CFAP337;nc|ENSG00000174776|Q8IV35-3|CFAP337	ENSG00000174776|ENST00000682715|WDR49	ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.8819885253906	3	436.882559	1307.62585	0.3045	0.00013303	-4.4245	-0.001933	-4.12	-0.0018	436.8815728602194	39.717	3.2766	39.487	39.018	42.294	-0.23021					266	87	7	0	0	0	0.94885	1	3387	3387		48.188	5.8499	1	141410000			63531	8495	44744	44807	68756	68756					-0.01565887584661141
QPEICVNNTPK	11	Unmodified	_QPEICVNNTPK_					0	0	0		ENST00000336139.8_1_11:123597023-123597197:-|nuORF	ENST00000336139.8_1_11:123597023-123597197:-|nuORF	ENST00000336139.8_1_11:123597023-123597197:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.8985595703125	3	414.876417	1241.60742	-0.6512	-0.00027017	-0.50822	-0.00021085	-1.1594	-0.00048102	415.2114708453365	25.179	0.45308	25.145	24.86	25.313	-0.034395					20	10	3	0	0	0	0.024765	1	1159	1159		47.228	0	1	32097			63532	12401	44745	44808	68757	68757					-0.003717655509035467
QPEKSPKT	8	Unmodified	_QPEKSPKT_					0	0	0			REV__LRFN5|p.T653K|1|0.23|ENSG00000165379|chr14:41891822-41891822|C/A|missense_variant	REV__LRFN5|p.T653K|1|0.23|ENSG00000165379|chr14:41891822-41891822|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.7458801269531	2	457.750724	913.486896	0.18849	8.628E-05	1.1886	0.00054409	1.3771	0.00063037	457.75093902846726	26.812	0.74949	26.812	26.324	27.073	0					23	17	2	0	0	0	0.027866	1	1376	1376		32.812	0	1	63040	+		63533	36322	44746	44809	68758	68758					0.026691945178072274
QPELWAQI	8	Unmodified	_QPELWAQI_					0	0	0		nc|ENSG00000160058|Q9NW68-5|BSDC1	nc|ENSG00000160058|Q9NW68-5|BSDC1	nc|ENSG00000160058|Q9NW68-5|BSDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.30322265625	2	492.761092	983.507631	-0.16029	-7.8985E-05	-3.8641	-0.0019041	-4.0243	-0.001983	492.7588807079412	31.97	0.55068	31.97	31.749	32.3	0					21	13	2	0	0	0	0.027866	1	2161	2161		58.782	9.3404	1	120550			63534	18421	44747	44810	68759	68759					0.0152178489746575
QPELWAQI	8	Unmodified	_QPELWAQI_					0	0	0		nc|ENSG00000160058|Q9NW68-5|BSDC1	nc|ENSG00000160058|Q9NW68-5|BSDC1	nc|ENSG00000160058|Q9NW68-5|BSDC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.761092	983.507631	-0.43239	-0.00021307	-11.505	-0.0056694	-11.938	-0.0058824	492.75553518890337	32.405	0.1717	32.168	32.086	32.258	-0.23666	0.24982	-0.0066268	NaN	87.754	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19912			63535	18421	44747	44810							0.0152178489746575
QPEYCILID	9	Unmodified	_QPEYCILID_					0	0	0			REV__LAMB1|p.R615C|1|0.14|ENSG00000091136|chr7:107962919-107962919|G/A|missense_variant	REV__LAMB1|p.R615C|1|0.14|ENSG00000091136|chr7:107962919-107962919|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.275634765625	2	547.26535	1092.51615	-0.50101	-0.00027419	2.4131	0.0013206	1.9121	0.0010464	547.2667836447243	72.87	0.41654	72.88	72.57	72.986	0.0096512					13	9	2	0	0	0	0.023635	1	8810	8810		66.429	0	1	184610	+		63536	36303	44748	44811	68760	68760					-0.026410292482069053
QPFDYIEI	8	Unmodified	_QPFDYIEI_					0	0	0			REV__nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L	REV__nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.810546875	2	512.752933	1023.49131	-2.0385	-0.0010453	-1.7216	-0.00088276	-3.7602	-0.001928	512.7517459826569	38.267	0.48544	38.294	38.127	38.612	0.027275					22	13	2	0	0	0	0.027866	1	3139	3139		71.296	2.5089	1	166990	+		63537	25959	44749	44812	68761	68761					-0.019493410592986038
QPFHNQRAVQ	10	Unmodified	_QPFHNQRAVQ_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5704345703125	3	408.879261	1223.61595	0.69226	0.00028305	0.80263	0.00032818	1.4949	0.00061123	408.8790118745092	32.017	0.39817	32.079	31.879	32.278	0.062885					20	9	3	0	0	0	0.03519	1	2147	2147		19.263	0	1	54964	+		63538	25956	44750	44813	68762	68762					0.013089692006133191
QPFLGLLI	8	Unmodified	_QPFLGLLI_					0	0	0			REV__ENSG00000203663|ENST00000641771|OR2L2	REV__ENSG00000203663|ENST00000641771|OR2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7557373046875	2	450.781296	899.54804	-0.11979	-5.3999E-05	-4.3042	-0.0019402	-4.424	-0.0019942	450.7792377232752	20.053	0.58818	20.053	19.735	20.323	0					22	11	3	0	0	0	0.027866	1	487	487		29.842	0	1	141050	+		63539	28536	44751	44814	68763	68763					0.09424751287906474
QPFLLRNGAN	10	Unmodified	_QPFLLRNGAN_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.2754516601562	2	565.309272	1128.60399	-2.4357	-0.0013769	-1.0452	-0.00059086	-3.4809	-0.0019678	565.3081136864562	60.353	0.82253	60.432	59.936	60.759	0.078884					52	21	3	0	0	0	0.03519	1	6839	6839		51.335	12.529	1	626230			63540	4401	44752	44815	68764	68764					0.04483352457418732
QPFQVRLQP	9	Unmodified	_QPFQVRLQP_					0	0	0		nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.7927856445312	2	556.81419	1111.61383	0.10415	5.799E-05	-0.35551	-0.00019795	-0.25137	-0.00013996	556.8137200937637	57.565	0.4128	57.375	57.148	57.56	-0.19017					18	10	2	0	0	0	0.024457	1	6313	6313		29.15	0	1	169880			63541	10700	44753	44816	68765	68765					0.06248540462820529
QPFSRGYDN	9	Unmodified	_QPFSRGYDN_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.24755859375	2	542.246338	1082.47812	-1.1223	-0.00060855	1.181	0.00064042	0.058765	3.1865E-05	542.2468394965264	89.772	0.79747	89.61	89.257	90.054	-0.1626					44	18	4	0	0	0	0.67687	1	10977	10977		47.657	3.2801	1	1169100	+		63542	28655	44754	44817	68766	68766					-0.0598177911865605
QPFSRLRY	8	Unmodified	_QPFSRLRY_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7767944335938	2	533.793258	1065.57196	-0.1741	-9.2932E-05	-0.70202	-0.00037473	-0.87612	-0.00046767	533.7926297594944	46.605	0.78523	46.508	46.223	47.008	-0.096649					43	21	3	0	0	0	0.027866	1	4476	4476		37.159	0	1	1102700			63543	2849	44755	44818	68767	68767					0.04179984774282275
QPFTITFTEKA	11	Unmodified	_QPFTITFTEKA_					0	0	0			REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.84033203125	2	641.837528	1281.6605	1.9106	0.0012263	2.8728	0.0018439	4.7834	0.0030702	641.8395243486109	109.95	0.55971	109.95	109.79	110.35	0					37	18	4	0	0	0	1.013	1	13992	13992		33.922	3.6039	1	397160	+		63544	36190	44756	44819	68768	68768					0.030939355034206528
QPGEQILSPLD	11	Unmodified	_QPGEQILSPLD_					0	0	0			REV__ENST00000598485.6_2_19:41246882-41255486:-|nuORF	REV__ENST00000598485.6_2_19:41246882-41255486:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.856689453125	2	598.81151	1195.60847	0.0030195	1.8081E-06	2.4034	0.0014392	2.4064	0.001441	598.8132564125963	91.653	0.56441	91.514	91.316	91.881	-0.13942					19	12	2	0	0	0	0.024762	1	11260	11260		37.812	1.3648	1	64127	+		63545	28040	44757	44820	68769	68769					0.01848772089670092
QPGGLQPLSF	10	Unmodified	_QPGGLQPLSF_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7650146484375	2	522.279649	1042.54475	-1.3746	-0.00071793	4.1671	0.0021764	2.7925	0.0014585	522.2816087317633	35.627	0.50723	35.627	35.417	35.924	0					21	12	2	0	0	0	0.03519	1	2797	2797		32.812	3.6629	1	337990			63546	1555	44758	44821	68770	68770					0.025174564432063562
QPGGSLRLS	9	Unmodified	_QPGGSLRLS_					0	0	0		nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74;nc|ENSG00000211972|A0A0C4DH42|IGHV3-66;nc|ENSG00000211967|P01767|IGHV3-53;nc|ENSG00000211942|P01766|IGHV3-13;ENSG00000259680|ENST00000569103|IGHV3OR16-17;nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D;nc|ENSG00000211964|P01763|IGHV3-48;nc|ENSG00000211957|A0A0C4DH35|IGHV3-35;nc|ENSG00000211949|P01764|IGHV3-23;nc|ENSG00000211944|A0A0C4DH30|IGHV3-16;nc|ENSG00000211938|P01780|IGHV3-7;nc|ENSG00000232216|A0A0B4J1X8|IGHV3-43;nc|ENSG00000223648|A0A075B6Q5|IGHV3-64;nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74;nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.753662109375	2	457.756341	913.498129	-0.73216	-0.00033515	-1.1413	-0.00052245	-1.8735	-0.0008576	457.75630284194165	20.632	2.1306	20.632	19.689	21.819	0					121	43	5	0	0	0	0.53979	1	540	540		56.721	1.9447	1	8141900			63547	18732;18733	44759	44822	68771	68771					0.03792016611953386
QPGKKGATQ	9	Unmodified	_QPGKKGATQ_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.7557678222656	2	457.756341	913.498129	-0.73216	-0.00033515	-1.1413	-0.00052245	-1.8735	-0.0008576	457.75630284194165	20.632	2.1306	20.632	19.689	21.819	0					121	43	5	0	0	0	0.46427	1	551	551		61.691	1.7605	1	8141900	+		63548	21929	44760	44823	68772	68772					0.03792016611953386
QPGLLPLPTGP	11	Unmodified	_QPGLLPLPTGP_					0	0	0		ENST00000542466.2_1_12:58120972-58121218:+|nuORF	ENST00000542466.2_1_12:58120972-58121218:+|nuORF	ENST00000542466.2_1_12:58120972-58121218:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3162841796875	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0017	1	10748	10748		36.447	0	1	5204600			63549	16456	44761	44824	68773	68773					0.08222889028456848
QPGLYLGL	8	Unmodified	_QPGLYLGL_					0	0	0			REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	REV__ADCY4|p.F909Lfs*29|1|0.35|ENSG00000129467|chr14:24319748-24319748|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.53045654296875	2	430.747453	859.480354	2.1413	0.00092235	-2.0457	-0.00088117	0.095601	4.118E-05	430.7466004900833	23.448	0.94163	23.257	22.897	23.838	-0.19117					43	21	3	0	0	0	0.027866	1	905	905		29.842	17.635	1	484340	+		63550	19073	44762	44825	68774	68774					0.04499301357088825
QPGNRGLL	8	Unmodified	_QPGNRGLL_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2253112792969	2	427.745776	853.477	-0.64368	-0.00027533	2.1751	0.00093039	1.5314	0.00065506	427.74610634926046	25.83	0.47207	25.806	25.526	25.998	-0.023087					16	10	2	0	0	0	0.027866	1	1229	1229		33.516	8.0654	1	52911			63551	8096	44763	44826	68775	68775					0.044400513030950606
QPGPAQRRPA	10	Unmodified	_QPGPAQRRPA_					0	0	0		ENST00000349310.7_1_14:105261854-105262055:-|nuORF	ENST00000349310.7_1_14:105261854-105262055:-|nuORF	ENST00000349310.7_1_14:105261854-105262055:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.296630859375	2	539.299239	1076.58392	-0.49756	-0.00026834	-1.9555	-0.0010546	-2.4531	-0.001323	539.7997638177839	17.319	0.55155	17.112	16.913	17.464	-0.20669					22	10	4	0	0	0	1.1329	1	167	167		27.882	1.1893	1	71821			63552	12589	44764	44827	68776	68776					0.0486960151747553
QPGPGSNGVPA	11	Unmodified	_QPGPGSNGVPA_					0	0	0		ENST00000343028.8_3_12:27156316-27167204:-|nuORF;ENST00000543803.5_3_12:27149776-27167204:-|nuORF;ENST00000545600.1_3_12:27156316-27167204:-|nuORF	ENST00000343028.8_3_12:27156316-27167204:-|nuORF	ENST00000343028.8_3_12:27156316-27167204:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7804260253906	2	490.743431	979.472308	-0.17334	-8.5064E-05	2.8054	0.0013767	2.632	0.0012916	490.74465528575365	26.712	0.42979	26.544	26.379	26.809	-0.16816					16	9	2	0	0	0	0.024785	1	1416	1416		45.972	1.5951	1	63164			63553	12525	44765	44828	68777	68777					-0.01824877630338051
QPGPMPLA	8	Unmodified	_QPGPMPLA_					0	0	0			REV__ENSG00000197363|ENST00000359971|ZNF517	REV__ENSG00000197363|ENST00000359971|ZNF517	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5873107910156	2	405.712556	809.41056	-0.15095	-6.1243E-05	-2.5876	-0.0010498	-2.7386	-0.0011111	405.7094908206308	25.585	0.45651	25.358	25.061	25.517	-0.22683					13	10	2	0	0	0	0.027866	1	1247	1247		20.482	7.5226	1	32466	+		63554	28296	44766	44829	68778	68778					-0.0017690058317612056
QPGPMPLA	8	Unmodified	_QPGPMPLA_					0	0	0			REV__ENSG00000197363|ENST00000359971|ZNF517	REV__ENSG00000197363|ENST00000359971|ZNF517	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	405.712556	809.41056	0.49021	0.00019888	3.2588	0.0013221	3.749	0.001521	405.71423478095505	24.964	0.48221	24.964	24.653	25.135	0	-0.19722	0.0039943	NaN	20.482	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39127	+		63555	28296	44766	44829							-0.0017690058317612056
QPGPPGQPGPL	11	Unmodified	_QPGPPGQPGPL_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.257568359375	2	522.777274	1043.53999	-0.67004	-0.00035028	-3.3922	-0.0017733	-4.0622	-0.0021236	522.7753026898364	23.213	0.24129	23.152	23.026	23.267	-0.06086					8	5	2	0	0	0	0.024768	1	886	886		47.657	6.8792	1	29315	+		63556	27995	44767	44830	68779	68779					0.019965723004588654
QPGPPRGV	8	Unmodified	_QPGPPRGV_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9231262207031	2	404.22722	806.439886	-1.2029	-0.00048624	1.8488	0.00074733	0.6459	0.00026109	404.22791501396983	26.23	0.54624	26.067	25.798	26.344	-0.16331					25	16	2	0	0	0	0.027866	1	1319	1319		20.482	1.1219	1	232750			63557	13502	44768	44831	68780	68780					0.02892379757327035
QPGPQGPPG	9	Unmodified	_QPGPQGPPG_					0	0	0		nc|ENSG00000188517|Q9BXS0-2|COL25A1;ENSG00000188517|ENST00000399132|COL25A1;COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant;nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1;ENSG00000084636|ENST00000373672|COL16A1;nc|ENSG00000084636|Q07092-2|COL16A1	nc|ENSG00000188517|Q9BXS0-2|COL25A1;REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1;REV__COL25A1|p.T426Sfs*3|1|0.14|ENSG00000188517|chr4:108859699-108859700|-/TGGC|frameshift_variant;nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000084636|ENST00000373672|COL16A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.70849609375	2	417.70886	833.403166	0.8325	0.00034774	-1.5292	-0.00063876	-0.69669	-0.00029101	417.7079260531676	98.214	1.047	98.212	97.635	98.682	-0.0020828					40	24	3	0	0	0	0.98128	1	12457	12457		24.203	0	1	221490			63558	1315;472;20318;19510;1772	44769	44832	68781	68781					-0.020199168592398564
QPGPVRFP	8	Unmodified	_QPGPVRFP_					0	0	0		ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-2|ADAMTS12	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2388610839844	2	449.250695	896.486836	-0.23507	-0.00010561	-3.2509	-0.0014605	-3.486	-0.0015661	449.2485995424712	23.941	0.73435	23.941	23.651	24.385	0					30	16	4	0	0	0	0.027866	1	989	989		42.474	25.109	1	132410			63559	25	44770	44833	68782	68782					0.03445239308462078
QPGPVRFP	8	Unmodified	_QPGPVRFP_					0	0	0		ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-2|ADAMTS12	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	449.250695	896.486836	0.37508	0.0001685	-4.0493	-0.0018192	-3.6742	-0.0016507	449.2486831592563	23.914	0.43784	23.699	23.384	23.822	-0.2151	-0.070572	5.9807E-05	NaN	52.299	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113680			63560	25	44770	44833							0.03445239308462078
QPGPVRFP	8	Unmodified	_QPGPVRFP_					0	0	0		ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-2|ADAMTS12	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	449.250695	896.486836	-0.22074	-9.9166E-05	-4.0182	-0.0018052	-4.239	-0.0019044	449.2488771232386	23.767	0.51782	23.587	23.395	23.913	-0.17989	-0.18273	8.7719E-05	NaN	52.299	24	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154250			63561	25	44770	44833							0.03445239308462078
QPGPVRFP	8	Unmodified	_QPGPVRFP_					0	0	0		ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-2|ADAMTS12	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	449.250695	896.486836	1.8472	0.00082985	-5.5029	-0.0024722	-3.6557	-0.0016423	449.24799834018484	23.788	0.47789	23.597	23.36	23.838	-0.19117	-0.17264	-0.0012462	NaN	52.299	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233960			63562	25	44770	44833							0.03445239308462078
QPGQSTYLLIA	11	Unmodified	_QPGQSTYLLIA_					0	0	0		ENSG00000198049|ENST00000367126|AVPR1B	ENSG00000198049|ENST00000367126|AVPR1B	ENSG00000198049|ENST00000367126|AVPR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	596.2876586914062	2	595.824421	1189.63429	-0.37851	-0.00022552	2.4312	0.0014486	2.0527	0.0012231	595.8257811963417	56.577	0.38641	56.375	56.171	56.557	-0.20209					15	9	2	0	0	0	0.024723	1	6147	6147		23.523	12.012	1	285530			63563	10089	44771	44834	68783	68783					0.04705666331960856
QPGRLVKVK	9	Unmodified	_QPGRLVKVK_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7871704101562	2	512.834926	1023.6553	-0.28078	-0.00014399	-0.47093	-0.00024151	-0.7517	-0.0003855	512.8348821514753	71.133	0.11182	71.144	71.05	71.162	0.010735					4	2	2	0	0	0	0.024506	1	8534	8534		23.042	0	1	73624			63564	1058	44772	44835	68784	68784					0.14441721222135584
QPGRSILAGF	10	Unmodified	_QPGRSILAGF_					0	0	0		ENST00000531585.1_1_11:126862365-126865054:+|nuORF	ENST00000531585.1_1_11:126862365-126865054:+|nuORF	ENST00000531585.1_1_11:126862365-126865054:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2904052734375	2	523.293091	1044.57163	-0.27124	-0.00014194	0.14245	7.4546E-05	-0.12879	-6.7394E-05	523.2929733747247	19.262	0.64131	19.144	18.854	19.495	-0.11872					31	12	3	0	0	0	0.94316	1	376	376		51.193	10.415	1	176730			63565	16266	44773	44836	68785	68785					0.05112565054423612
QPGRSILAGF	10	Unmodified	_QPGRSILAGF_					0	0	0		ENST00000531585.1_1_11:126862365-126865054:+|nuORF	ENST00000531585.1_1_11:126862365-126865054:+|nuORF	ENST00000531585.1_1_11:126862365-126865054:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2899780273438	2	523.293091	1044.57163	2.783	0.0014563	-2.8388	-0.0014855	-0.055793	-2.9196E-05	523.2915268655483	19.243	0.54343	19.309	19.093	19.637	0.066195					32	10	4	0	0	0	1.0447	1	342	342		40.058	3.6114	1	176480			63566	16266	44773	44836	68786	68786					0.05112565054423612
QPGSRPWS	8	Unmodified	_QPGSRPWS_					0	0	0			REV__ENST00000338660.5_1_1:1375524-1375638:+|nuORF	REV__ENST00000338660.5_1_1:1375524-1375638:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7558898925781	2	457.727584	913.440614	-0.73315	-0.00033558	3.4523	0.0015802	2.7192	0.0012446	457.72867573002134	20.59	0.67452	20.59	20.225	20.9	0					20	13	2	0	0	0	0.027866	1	563	563		57.811	0	1	11777	+		63567	30592	44774	44837	68787	68787					-0.01956825593629219
QPGSTPLDLF	10	Unmodified	_QPGSTPLDLF_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2874755859375	2	537.776939	1073.53933	-1.3735	-0.00073862	2.4172	0.0012999	1.0437	0.00056128	537.7777723812497	21.071	1.7295	21.071	20.562	22.291	0					50	35	3	0	0	0	0.03519	1	679	679		24.519	0.31644	1	92501			63568	3067	44775	44838	68788	68788					0.005497328607589225
QPGVVKVL	8	Unmodified	_QPGVVKVL_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.53009033203125	2	420.271096	838.527639	1.4625	0.00061466	-1.1587	-0.00048695	0.30387	0.00012771	420.27043803696176	23.019	0.55204	22.827	22.572	23.124	-0.19117					26	11	3	0	0	0	0.027866	1	868	868		18.324	0	1	278440	+		63569	29178	44776	44839	68789	68789					0.1019158062807719
QPGWGGEWE	9	Unmodified	_QPGWGGEWE_					0	0	0		ENST00000418273.2_1_10:88729981-88730299:-|nuORF	ENST00000418273.2_1_10:88729981-88730299:-|nuORF	ENST00000418273.2_1_10:88729981-88730299:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2578735351562	2	523.222331	1044.43011	-0.17657	-9.2384E-05	1.5365	0.00080396	1.36	0.00071157	523.2234014607247	23.823	0.17772	23.899	23.778	23.956	0.076241					6	3	2	0	0	0	0.024541	1	929	929		24.203	6.8378	1	6761			63570	13933	44777	44840	68790	68790					-0.0903285303870689
QPHCMTEDS	9	Unmodified	_QPHCMTEDS_					0	0	0			REV__ECM2|p.C133S|1|0.41|ENSG00000106823|chr9:92517771-92517771|A/T|missense_variant	REV__ECM2|p.C133S|1|0.41|ENSG00000106823|chr9:92517771-92517771|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.7704467773438	2	524.197141	1046.37973	-0.58313	-0.00030568	0.015024	7.8758E-06	-0.56811	-0.0002978	524.1970382065024	30.912	0.46442	30.924	30.75	31.214	0.011797					15	10	2	0	0	0	0.024541	1	1990	1990		14.865	8.5522	1	133280	+		63571	19728	44778	44841	68791	68791					-0.14160466750377054
QPHGATGF	8	Unmodified	_QPHGATGF_					0	0	0			REV__nc|ENSG00000133961|P49757-9|NUMB	REV__nc|ENSG00000133961|P49757-9|NUMB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.69598388671875	2	407.695752	813.376952	0.33935	0.00013835	0.20073	8.1837E-05	0.54008	0.00022019	407.6956030005948	36.669	0.75121	36.464	36.203	36.954	-0.20518					45	18	4	0	0	0	0.96719	1	2900	2900		42.474	8.9589	1	1253000	+		63572	23405	44779	44842	68792	68792					-0.03720186030705008
QPHGATGF	8	Unmodified	_QPHGATGF_					0	0	0			REV__nc|ENSG00000133961|P49757-9|NUMB	REV__nc|ENSG00000133961|P49757-9|NUMB	MSMS	OPSCC_40_ClassI_Rep-2	5	407.6959228515625	2	407.695752	813.376952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.681	1	36.465	35.965	36.965	-0.21661								0	0	0	0.68408	1	2887	2887		42.474	1.9018	1		+		63573	23405	44779	44842	68793	68793					-0.03720186030705008
QPHGATGF	8	Unmodified	_QPHGATGF_					0	0	0			REV__nc|ENSG00000133961|P49757-9|NUMB	REV__nc|ENSG00000133961|P49757-9|NUMB	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	407.695752	813.376952	0.33935	0.00013835	0.20073	8.1837E-05	0.54008	0.00022019	407.6956030005948	36.669	0.75121	36.464	36.203	36.954	-0.20518	0.07488	0.00052344	NaN	42.474	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1253000	+		63574	23405	44779	44842							-0.03720186030705008
QPHGATGF	8	Unmodified	_QPHGATGF_					0	0	0			REV__nc|ENSG00000133961|P49757-9|NUMB	REV__nc|ENSG00000133961|P49757-9|NUMB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	407.695752	813.376952	1.6251	0.00066256	-1.0423	-0.00042493	0.58286	0.00023763	407.6951426229997	36.512	0.72031	36.314	36.016	36.736	-0.19829	-0.07488	-0.00049008	NaN	42.474	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	924800	+		63575	23405	44779	44842							-0.03720186030705008
QPHHQQWLQ	9	Unmodified	_QPHHQQWLQ_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	600.8248291015625	2	601.296696	1200.57884	-0.58065	-0.00034914	-0.49973	-0.00030049	-1.0804	-0.00064963	601.2959516167393	55.154	0.39101	54.923	54.674	55.065	-0.23087					12	10	2	0	0	0	0.024477	1	5883	5883		20.947	4.2295	1	73090	+		63576	23960	44780	44843	68794	68794					-0.013427023451640707
QPHLKENI	8	Unmodified	_QPHLKENI_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2865295410156	2	489.771991	977.529429	-0.3926	-0.00019229	0.0041685	2.0416E-06	-0.38844	-0.00019024	489.7719271765553	63.24	1.267	63.019	62.648	63.915	-0.22097					46	31	2	0	0	0	0.027866	1	7155	7155		17.365	0	1	151110	+		63577	37133	44781	44844	68795	68795					0.03976589646026696
QPHPHPGPL	9	Unmodified	_QPHPHPGPL_					0	0	0			REV__ENST00000361357.7_1_17:61772754-61773267:+|nuORF	REV__ENST00000361357.7_1_17:61772754-61773267:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.31829833984375	2	490.259051	978.503549	-0.35244	-0.00017279	-3.7673	-0.001847	-4.1197	-0.0020197	490.2566419134457	66.959	0.44639	66.959	66.798	67.245	0					17	10	3	0	0	0	0.024436	1	8016	8016		30.504	0	1	191640	+		63578	30938	44782	44845	68796	68796					0.013437401944315752
QPHPPLLT	8	Unmodified	_QPHPPLLT_					0	0	0			REV__ENST00000374561.5_1_1:23884502-23884709:-|nuORF	REV__ENST00000374561.5_1_1:23884502-23884709:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2456970214844	2	451.758352	901.502152	-0.09592	-4.3332E-05	-3.8893	-0.001757	-3.9852	-0.0018004	451.75647587261614	19.929	0.86606	19.824	19.509	20.375	-0.10477					32	17	3	0	0	0	0.027866	1	518	518		31.955	13.63	1	113580	+		63579	31301	44783	44846	68797	68797					0.0474610610565378
QPHRLKAF	8	Unmodified	_QPHRLKAF_					0	0	0		nc|ENSG00000140254|Q1HG43-2|DUOXA1;nc|ENSG00000140254|Q1HG43-3|DUOXA1;ENSG00000140254|ENST00000560572|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7690734863281	2	498.790518	995.566484	0.79694	0.00039751	-4.3451	-0.0021673	-3.5481	-0.0017698	498.78803000792095	19.731	0.34541	19.498	19.325	19.67	-0.23345					11	6	2	0	0	0	0.027866	1	432	432		13.775	3.5906	1	56186			63580	18332	44784	44847	68798	68798					0.06852305982465623
QPHSPTSSL	9	Unmodified	_QPHSPTSSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2378845214844	2	477.237981	952.461409	0.34218	0.0001633	-0.27509	-0.00013128	0.067088	3.2017E-05	477.2378523213857	31.806	1.5894	31.806	31.089	32.679	0					130	39	5	0	0	0	0.14024	1	2165	2165		101.6	0.34809	1	8385700			63581	4177	44785	44848	68799	68799					-0.016722800046068187
QPHSPTSSL	9	Unmodified	_QPHSPTSSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.2380676269531	2	477.237981	952.461409	0.068142	3.252E-05	0.014814	7.0699E-06	0.082956	3.959E-05	477.2380120493855	31.67	1.6273	31.682	31.041	32.669	0.011797					115	40	5	0	0	0	0.23085	1	2147	2147		84.916	2.165	1	9503000			63582	4177	44785	44848	68800	68800					-0.016722800046068187
QPHSPTSSL	9	Unmodified	_QPHSPTSSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2380676269531	2	477.237981	952.461409	-0.14367	-6.8563E-05	0.21582	0.000103	0.072149	3.4432E-05	477.2380945594727	31.372	1.5962	31.441	30.912	32.508	0.068962					117	39	5	0	0	0	0.057894	2	2034	2034;2077		125.81	13.403	1	7967800			63583	4177	44785	44848	68801;68802	68801					-0.016722800046068187
QPIAWASL	8	Unmodified	_QPIAWASL_					0	0	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.29193115234375	2	443.245078	884.475603	-0.29224	-0.00012953	-2.602	-0.0011533	-2.8942	-0.0012828	443.24333359257724	33.597	0.68217	33.366	33.114	33.796	-0.23107					19	16	2	0	0	0	0.027866	1	2396	2396		47.916	1.9636	1	49590			63584	4027	44786	44849	68803	68803					0.028744172143206015
QPIAWASL	8	Unmodified	_QPIAWASL_					0	0	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	443.245078	884.475603	-0.40763	-0.00018068	-3.4094	-0.0015112	-3.817	-0.0016919	443.2434859200391	33.415	0.64161	33.415	33.213	33.855	0	0.10286	-0.00047264	NaN	47.916	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249510			63585	4027	44786	44849							0.028744172143206015
QPIAWASL	8	Unmodified	_QPIAWASL_					0	0	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.245078	884.475603	-0.40762	-0.00018068	-2.9688	-0.0013159	-3.3764	-0.0014966	443.2434324863494	33.232	0.53126	33.239	33.117	33.649	0.0066261	-0.074004	-8.1995E-05	NaN	47.916	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114380			63586	4027	44786	44849							0.028744172143206015
QPIAWASL	8	Unmodified	_QPIAWASL_					0	0	0		ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	ENSG00000124216|ENST00000244050|SNAI1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.245078	884.475603	0.56386	0.00024993	-2.0024	-0.00088756	-1.4386	-0.00063764	443.2433155081904	33.173	0.6975	33.23	32.995	33.693	0.056568	-0.082616	0.00077465	NaN	47.916	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158270			63587	4027	44786	44849							0.028744172143206015
QPIELLSM	8	Unmodified	_QPIELLSM_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2615051269531	2	465.751879	929.489204	-0.20202	-9.4089E-05	-0.27592	-0.00012851	-0.47794	-0.0002226	465.7505859784234	22.524	0.47264	22.598	22.365	22.837	0.073954					21	9	3	0	0	0	0.027866	1	744	744		17.365	0	1	26607			63588	3574	44787	44850	68804	68804					0.02163906931252768
QPIMAHPPE	9	Unmodified	_QPIMAHPPE_					0	0	0		ENST00000511718.5_1_5:79809433-79814625:+|nuORF;ENST00000509292.1_1_5:79797630-79817970:+|nuORF;ENSG00000152380|ENST00000282226|FAM151B	ENST00000511718.5_1_5:79809433-79814625:+|nuORF	ENST00000511718.5_1_5:79809433-79814625:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7752380371094	2	510.252577	1018.4906	-0.46323	-0.00023637	0.061537	3.1399E-05	-0.4017	-0.00020497	510.2525593554497	44.66	0.85764	44.697	44.209	45.067	0.0369					41	24	2	0	0	0	0.024477	1	4178	4178		27.882	0	1	186420			63589	6269	44788	44851	68805	68805					-0.017904589799968562
QPIMIPSH	8	Unmodified	_QPIMIPSH_					0	0	0			REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7373046875	2	461.744388	921.474223	0.68326	0.00031549	0.669	0.00030891	1.3523	0.0006244	461.7445179219101	72.913	0.57078	72.632	72.344	72.915	-0.28124					19	13	2	0	0	0	0.027866	1	8877	8877		38.806	0	1	118080	+		63590	36587	44789	44852	68806	68806					0.010344598539063554
QPIMWLAL	8	Unmodified	_QPIMWLAL_					0	0	0			REV__ENST00000406439.7_2_1:43869410-43870111:+|nuORF	REV__ENST00000406439.7_2_1:43869410-43870111:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.76947021484375	2	486.272781	970.531009	-0.92448	-0.00044955	-2.3291	-0.0011326	-3.2536	-0.0015821	486.2720090805097	35.065	1.0239	35.11	34.551	35.575	0.04406					81	26	4	0	0	0	0.027866	1	2642	2642		14.664	0	1	633350	+		63591	31921	44790	44853	68807	68807					0.04456507410418453
QPIQYQYQDNI	11	Unmodified	_QPIQYQYQDNI_					0	0	0		ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2615661621094	3	470.561375	1408.66229	0.74633	0.00035119	4.2897	0.0020185	5.036	0.0023697	470.56327717577994	25.48	0.54558	25.56	25.377	25.922	0.08009					27	12	3	0	0	0	0.024816	1	1208	1208		16.53	0	1	214220			63592	1943	44791	44854	68808	68808					-0.025690554786251596
QPISTQTLV	9	Unmodified	_QPISTQTLV_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77630615234375	2	493.779482	985.544411	-0.45594	-0.00022513	0.51792	0.00025574	0.061979	3.0604E-05	493.77981800775524	52.168	0.70701	52.26	52.003	52.71	0.091938					26	17	2	0	0	0	0.024515	1	5527	5527		35.152	24.887	1	524070			63593	4246	44792	44855	68809	68809					0.051060367233731085
QPITPGPSI	9	Unmodified	_QPITPGPSI_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.2545471191406	2	455.255643	908.496732	0.21201	9.652E-05	-0.98151	-0.00044684	-0.7695	-0.00035032	455.25509982464104	56.999	0.99549	56.999	56.571	57.567	0					61	27	3	0	0	0	0.057894	5	6391	6381;6391;6403;6416;6428		125.81	51.839	1	10801000			63594	741	44793	44856	68810;68811;68812;68813;68814	68811					0.03882382523192973
QPITPGPSI	9	Unmodified	_QPITPGPSI_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.2549133300781	2	455.255643	908.496732	0.2749	0.00012515	-2.367	-0.0010776	-2.0921	-0.00095244	455.25511911600967	57.134	1.5978	56.97	56.058	57.656	-0.16431					87	43	3	0	0	0	0.057894	5	6391	6380;6391;6403;6415;6427		125.81	51.839	1	10293000			63595	741	44793	44856	68815;68816;68817;68818;68819	68816					0.03882382523192973
QPITPGPSI	9	Unmodified	_QPITPGPSI_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.25482177734375	2	455.255643	908.496732	0.02153	9.8017E-06	-0.58049	-0.00026427	-0.55896	-0.00025447	455.2552316364505	56.869	0.92448	56.964	56.578	57.503	0.095306					59	25	3	0	0	0	0.091713	6	6281	6270;6281;6292;6304;6316;6329		113.41	39.437	1	11949000			63596	741	44793	44856	68820;68821;68822;68823;68824;68825	68821					0.03882382523192973
QPKATRQP	8	Unmodified	_QPKATRQP_					0	0	0		ENST00000343938.8_1_1:1263420-1264233:+|nuORF	ENST00000343938.8_1_1:1263420-1264233:+|nuORF	ENST00000343938.8_1_1:1263420-1264233:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2479248046875	2	463.264333	924.514114	0.46029	0.00021323	4.1816	0.0019372	4.6419	0.0021504	463.26602698013244	33.62	2.519	33.676	32.76	35.279	0.056572					157	65	3	0	0	0	0.027866	1	2281	2281		37.159	14.122	1	1048300			63597	12540	44794	44857	68826	68826					0.04883722848853722
QPKDDIVD	8	Unmodified	_QPKDDIVD_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.28448486328125	2	465.232364	928.450176	-0.12197	-5.6745E-05	0.7209	0.00033538	0.59892	0.00027864	465.2323987581964	24.81	0.30729	24.635	24.425	24.733	-0.17484					9	6	2	0	0	0	0.027866	1	1090	1090		24.203	0	1	48147			63598	2760	44795	44858	68827	68827					-0.01691102098754982
QPKDDIVD	8	Unmodified	_QPKDDIVD_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.232364	928.450176	-1.1054	-0.00051425	3.043	0.0014157	1.9377	0.00090146	465.23327874340055	24.811	0.49324	24.764	24.398	24.891	-0.047146	0.10724	0.0021551	NaN	17.365	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16245			63599	2760	44795	44858							-0.01691102098754982
QPKEKIVI	8	Unmodified	_QPKEKIVI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197144100-197146141|494|10.03|0.52|4.28|-|0|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.80316162109375	2	477.80276	953.590967	0.22571	0.00010784	0.28055	0.00013405	0.50625	0.00024189	477.80244322282726	33.653	0.87655	33.422	33.114	33.99	-0.23107					58	21	5	0	0	0	0.87148	1	2426	2426		53.351	3.9099	1	2239800			63600	1335	44796	44859	68828	68828					0.11231521345325746
QPKFLQLVQV	10	Unmodified	_QPKFLQLVQV_					0	0	0		ENST00000499006.6_1_14:98435621-98444449:-|nuORF	ENST00000499006.6_1_14:98435621-98444449:-|nuORF	ENST00000499006.6_1_14:98435621-98444449:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.57574462890625	3	400.576408	1198.70739	1.0915	0.00043721	-3.1822	-0.0012747	-2.0908	-0.00083751	400.5751060913079	17.913	1.2405	17.706	17.464	18.705	-0.20669					50	24	3	0	0	0	1.0447	1	237	237		40.058	3.6114	1	579950			63601	15635	44797	44860	68829	68829					0.1159883984521457
QPKGCPPK	8	Unmodified	_QPKGCPPK_					0	0	0		ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.7296142578125	2	427.73128	853.448008	-0.96762	-0.00041388	-2.7958	-0.0011958	-3.7634	-0.0016097	427.7299534758875	29.019	0.91025	28.774	28.363	29.273	-0.24524					49	20	4	0	0	0	0.68535	2	1741	1741;1753		68.485	16.186	1	1075700			63602	11	44798	44861	68830;68831	68830					0.015421906824485632
QPKGCPPK	8	Unmodified	_QPKGCPPK_					0	0	0		ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.7297058105469	2	427.73128	853.448008	-0.16618	-7.108E-05	-3.7389	-0.0015992	-3.9051	-0.0016703	427.72955809338526	28.876	1.1973	28.707	28.254	29.451	-0.16897					59	27	4	0	0	0	0.81662	1	1715	1715		57.811	5.5121	1	1499700			63603	11	44798	44861	68832	68832					0.015421906824485632
QPKGCPPK	8	Unmodified	_QPKGCPPK_					0	0	0		ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	ABL2|p.E508K|1|0.22|ENSG00000143322|chr1:179114917-179114917|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.7297668457031	2	427.73128	853.448008	-0.09216	-3.942E-05	-3.8518	-0.0016475	-3.9439	-0.0016869	427.72951552969914	28.799	0.92772	28.65	28.285	29.213	-0.14952					48	21	3	0	0	0	0.65272	2	1686	1686;1696		71.378	11.084	1	1893500			63604	11	44798	44861	68833;68834	68833					0.015421906824485632
QPKGLTPGPGF	11	Unmodified	_QPKGLTPGPGF_					0	0	0			REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.7992553710938	2	549.800749	1097.58694	-0.83148	-0.00045715	-3.1456	-0.0017295	-3.9771	-0.0021866	549.7990097716544	21.943	1.2651	21.943	21.537	22.803	0					92	26	6	0	0	0	0.48498	1	745	745		77.318	6.0219	1	3033200	+		63605	36895;36190	44799	44862	68835	68835					0.04205431851596586
QPKIVWEA	8	Unmodified	_QPKIVWEA_					0	0	0			REV__ENSG00000088756|ENST00000383472|ARHGAP28	REV__ENSG00000088756|ENST00000383472|ARHGAP28	MSMS	OPSCC_39_ClassI_Rep-1	1	485.76983642578125	2	485.77146	969.528367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.466	1	35.466	34.966	35.966	0								0	0	0	0.58353	1	2733	2733		49.442	1.5259	1		+		63606	20818	44800	44863	68836	68836					0.04238375277122941
QPKKKAFFA	9	Unmodified	_QPKKKAFFA_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.8163452148438	2	532.816202	1063.61785	-1.2262	-0.00065332	-2.7258	-0.0014524	-3.952	-0.0021057	532.8146365760584	25.139	0.82252	25.139	24.83	25.652	0					47	19	4	0	0	0	0.29104	1	1160	1160		76.847	2.8719	1	828650	+		63607	23220	44801	44864	68837	68837					0.08858629956512232
QPKKLMDVFK	10	Unmodified	_QPKKLMDVFK_					0	0	0		ENST00000474340.1_1_9:95003027-95004705:-|nuORF	ENST00000474340.1_1_9:95003027-95004705:-|nuORF	ENST00000474340.1_1_9:95003027-95004705:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.56280517578125	3	411.905648	1232.69511	-0.46428	-0.00019124	3.4857	0.0014358	3.0214	0.0012445	411.90704470574985	33.036	0.47916	32.871	32.638	33.117	-0.16565					24	11	3	0	0	0	0.03519	1	2299	2299		34.087	23.983	1	211020			63608	15029	44802	44865	68838	68838					0.08807480110522192
QPKKRAETL	9	Unmodified	_QPKKRAETL_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000162989|ENST00000295101|KCNJ3;ENSG00000157542|ENST00000609713|KCNJ6	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.8195190429688	2	535.819473	1069.62439	0.65164	0.00034916	-0.73039	-0.00039135	-0.078743	-4.2192E-05	535.8188442409278	18.231	0.34297	18.075	17.904	18.247	-0.15637					15	6	3	0	0	0	0.99726	1	284	284		20.947	0	1	152120			63609	3816	44803	44866	68839	68839					0.09236523117237994
QPKKRFAF	8	Unmodified	_QPKKRFAF_					0	0	0		TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26947021484375	2	511.300719	1020.58688	-0.79897	-0.00040851	0.68475	0.00035011	-0.11422	-5.8401E-05	511.3008822325223	26.662	0.55282	26.498	26.199	26.752	-0.16331					21	13	2	0	0	0	0.027866	1	1387	1387		8.2313	0.54101	1	86160			63610	4067	44804	44867	68840	68840					0.07741476642274847
QPKKRFAF	8	Unmodified	_QPKKRFAF_					0	0	0		TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.300719	1020.58688	-0.72922	-0.00037285	0.21938	0.00011217	-0.50985	-0.00026068	511.3004456494927	26.694	0.43904	26.458	26.268	26.707	-0.23603	0.028971	-6.7682E-05	NaN	8.2313	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87085			63611	4067	44804	44867							0.07741476642274847
QPKKRFAF	8	Unmodified	_QPKKRFAF_					0	0	0		TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant;ENSG00000124659|ENST00000372876|TBCC	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	TBCC|p.R326Pfs*13|1|0.14|ENSG00000124659|chr6:42745097-42745098|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.300719	1020.58688	-0.40778	-0.0002085	-0.082289	-4.2075E-05	-0.49007	-0.00025057	511.30040832623496	26.499	0.62855	26.331	26.052	26.68	-0.16816	-0.098201	-0.00037617	NaN	8.2313	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94728			63612	4067	44804	44867							0.07741476642274847
QPKLDRHLV	9	Unmodified	_QPKLDRHLV_					0	0	0			REV__ENSG00000170312|ENST00000395284|CDK1;REV__ENST00000554619.5_1_12:56361683-56363594:+|nuORF;REV__ENSG00000059758|ENST00000261211|CDK17	REV__ENSG00000170312|ENST00000395284|CDK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.2251586914062	2	553.327465	1104.64038	-0.22965	-0.00012707	-1.0842	-0.00059993	-1.3139	-0.00072701	553.3269394478956	30.627	0.29821	30.478	30.301	30.599	-0.14952					11	6	2	0	0	0	0.024541	1	1935	1935		10.866	0	1	64970	+		63613	26455;22692;20245	44805	44868	68841	68841					0.09224229354117597
QPKLSMTLP	9	Unmodified	_QPKLSMTLP_					0	0	0			REV__nc|ENSG00000204842|Q99700-2|ATXN2	REV__nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.788330078125	2	507.786253	1013.55795	-0.41455	-0.0002105	3.9414	0.0020014	3.5268	0.0017909	507.7882805000786	20.046	1.148	19.941	19.557	20.705	-0.10477					61	23	4	0	0	0	0.14024	1	475	475		101.6	11.231	1	2020100	+		63614	37083	44806	44869	68842	68842					0.05171571230960126
QPKNKKVW	8	Unmodified	_QPKNKKVW_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B;REV__ENST00000491278.5_1_2:128392149-128394989:+|nuORF	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.790283203125	2	514.306001	1026.59745	-0.5099	-0.00026225	-4.1139	-0.0021158	-4.6238	-0.002378	514.3038675743963	20.535	0.52434	20.431	20.227	20.752	-0.10477					23	10	4	0	0	0	0.027866	1	517	517		33.516	0.70317	1	58320	+		63615	26425;33721	44807	44870	68843	68843					0.0852145929670769
QPKNKKVW	8	Unmodified	_QPKNKKVW_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B;REV__ENST00000491278.5_1_2:128392149-128394989:+|nuORF	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7880859375	2	514.306001	1026.59745	-1.2595	-0.00064776	-3.1818	-0.0016364	-4.4413	-0.0022842	514.3043033552615	27.35	0.47667	27.431	27.245	27.722	0.081293					20	12	2	0	0	0	0.027866	1	1472	1472		13.775	0	1	143870	+		63616	26425;33721	44807	44870	68844	68844					0.0852145929670769
QPKPKIKRASD	11	Unmodified	_QPKPKIKRASD_					0	0	0			REV__ENSG00000048342|ENST00000424120|CC2D2A;REV__ENST00000514450.2_1_4:15471657-15513157:+|nuORF	REV__ENSG00000048342|ENST00000424120|CC2D2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.3759765625	2	634.377686	1266.74082	0.84136	0.00053374	-2.0534	-0.0013026	-1.212	-0.00076886	634.3762285727594	110.55	0.44147	110.54	110.34	110.78	-0.011299					33	15	3	0	0	0	1.0483	1	13948	13948		25.574	4.6271	1	6812000	+		63617	20137;34174	44808	44871	68845	68845					0.11811841617145546
QPKPKIKRASD	11	Unmodified	_QPKPKIKRASD_					0	0	0			REV__ENSG00000048342|ENST00000424120|CC2D2A;REV__ENST00000514450.2_1_4:15471657-15513157:+|nuORF	REV__ENSG00000048342|ENST00000424120|CC2D2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.3767700195312	2	634.377686	1266.74082	-0.92735	-0.00058829	-0.67786	-0.00043002	-1.6052	-0.0010183	634.3771743485321	110.71	0.50396	110.59	110.51	111.02	-0.12524					33	17	2	0	0	0	1.0483	1	13602	13602		25.574	1.3713	1	4299400	+		63618	20137;34174	44808	44871	68846	68846					0.11811841617145546
QPKPKIKRASD	11	Unmodified	_QPKPKIKRASD_					0	0	0			REV__ENSG00000048342|ENST00000424120|CC2D2A;REV__ENST00000514450.2_1_4:15471657-15513157:+|nuORF	REV__ENSG00000048342|ENST00000424120|CC2D2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.3771362304688	2	634.377686	1266.74082	-1.6425	-0.001042	0.59242	0.00037582	-1.0501	-0.00066614	634.3780219291895	111.26	0.28102	111.12	110.88	111.16	-0.14127					24	13	2	0	0	0	1.0483	1	13590	13590		25.574	3.6142	1	2157000	+		63619	20137;34174	44808	44871	68847	68847					0.11811841617145546
QPKPREIS	8	Unmodified	_QPKPREIS_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.76055908203125	2	477.771991	953.529429	0.41313	0.00019738	-0.22916	-0.00010949	0.18397	8.7894E-05	477.7716641669032	34.204	0.93443	34.204	33.932	34.867	0					33	23	2	0	0	0	0.027866	1	2501	2501		15.642	4.1308	1	356790			63620	6943	44809	44872	68848	68848					0.05080589646047429
QPKQICKDQK	10	Unmodified	_QPKQICKDQK_					0	0	0		ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.5875244140625	3	405.888657	1214.64414	-0.69135	-0.00028061	-1.9633	-0.0007969	-2.6547	-0.0010775	405.88778015685205	25.686	0.46761	25.514	25.282	25.75	-0.17151					18	10	2	0	0	0	0.03519	1	1204	1204		18.531	0	1	289330			63621	10326	44810	44873	68849	68849					0.045405310656633446
QPKQKIRV	8	Unmodified	_QPKQKIRV_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2748107910156	2	498.819276	995.623999	0.064356	3.2102E-05	-0.33522	-0.00016722	-0.27087	-0.00013511	498.81903885229315	20.221	0.48651	19.997	19.779	20.266	-0.22344					20	9	3	0	0	0	0.027866	1	497	497		38.806	8.3025	1	107310			63622	974	44811	44874	68850	68850					0.1260114818803686
QPKRPPAA	8	Unmodified	_QPKRPPAA_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.8885498046875	2	432.756144	863.497735	-0.13633	-5.8999E-05	0.16926	7.3249E-05	0.032927	1.4249E-05	432.7561419533017	21.976	0.57902	21.774	21.469	22.048	-0.20199					33	11	4	0	0	0	0.027866	1	709	709		20.482	0	1	132700			63623	10346	44812	44875	68851	68851					0.060526416827428875
QPKSAITS	8	Unmodified	_QPKSAITS_					0	0	0		ENST00000451424.1_1_1:20974977-20975394:-|nuORF	ENST00000451424.1_1_1:20974977-20975394:-|nuORF	ENST00000451424.1_1_1:20974977-20975394:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.5340576171875	2	416.232168	830.449782	1.0114	0.00042097	0.81433	0.00033895	1.8257	0.00075992	416.2324530796755	19.982	0.29346	19.782	19.603	19.897	-0.2001					7	5	2	0	0	0	0.027866	1	466	466		30.504	8.8013	1	23844			63624	14521	44813	44876	68852	68852					0.027775229720305106
QPKSVEDLLD	10	Unmodified	_QPKSVEDLLD_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.3016967773438	2	572.298236	1142.58192	4.9402	0.0028273	-0.82479	-0.00047202	4.1155	0.0023553	572.2977170763648	17.25	0.24649	16.999	16.881	17.128	-0.25049					7	4	2	0	0	0	1.1088	1	137	137		31.53	3.6476	1	60903			63625	3160	44814	44877	68853	68853					0.01633083198339591
QPKSVEDLLD	10	Unmodified	_QPKSVEDLLD_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	572.298236	1142.58192	1.4967	0.00085655	2.8868	0.0016521	4.3835	0.0025087	572.2993902388664	17.216	0.30281	17.062	16.856	17.159	-0.15403	0.045368	0.0025693	NaN	31.53	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22787			63626	3160	44814	44877							0.01633083198339591
QPKSVEDLLD	10	Unmodified	_QPKSVEDLLD_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	572.298236	1142.58192	-0.15226	-8.7136E-05	4.2876	0.0024538	4.1353	0.0023666	572.3007449837007	17.196	0.25274	16.989	16.863	17.116	-0.20669	-0.027859	0.0041726	NaN	31.53	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25682			63627	3160	44814	44877							0.01633083198339591
QPKTYYDLR	9	Unmodified	_QPKTYYDLR_					0	0	0			REV__ENSG00000106524|ENST00000306999|ANKMY2	REV__ENSG00000106524|ENST00000306999|ANKMY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.287353515625	2	592.308938	1182.60332	-0.8871	-0.00052544	2.553	0.0015122	1.6659	0.00098673	592.3106595788463	72.987	0.50689	72.722	72.511	73.017	-0.26479					23	11	3	0	0	0	0.024495	1	8589	8589		34.173	2.6427	1	156210	+		63628	21622	44815	44878	68854	68854					0.019325130176866878
QPKVKAEPPP	10	Unmodified	_QPKVKAEPPP_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3170166015625	2	545.816399	1089.61824	-1.5972	-0.00087178	0.061543	3.3591E-05	-1.5357	-0.00083818	545.8172456565018	91.414	0.64127	91.265	91.014	91.655	-0.1487					30	14	3	0	0	0	0.03519	1	11242	11242		40.778	18.818	1	769530			63629	1240	44816	44879	68855	68855					0.07702004885709357
QPKVKAEPPP	10	Unmodified	_QPKVKAEPPP_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3162231445312	2	545.816399	1089.61824	-0.22708	-0.00012394	-0.40713	-0.00022222	-0.63421	-0.00034616	545.8173766693668	91.534	0.68821	91.395	91.105	91.794	-0.13942					32	15	3	0	0	0	0.03519	1	11206	11206		25.574	4.6271	1	717420			63630	1240	44816	44879	68856	68856					0.07702004885709357
QPKVKSPQR	9	Unmodified	_QPKVKSPQR_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.3189086914062	2	534.31964	1066.62473	2.1509	0.0011492	-2.4822	-0.0013263	-0.3313	-0.00017702	534.3182353459338	19.447	0.78508	19.513	19.044	19.829	0.066195					31	15	3	0	0	0	0.56934	1	379	379		54.776	3.4409	1	125120			63631	1685	44817	44880	68857	68857					0.09407942837083283
QPKVRNKQFPR	11	Unmodified	_QPKVRNKQFPR_					0	0	0			REV__nc|ENSG00000161813|Q71RC2-7|LARP4	REV__nc|ENSG00000161813|Q71RC2-7|LARP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.60736083984375	3	466.608993	1396.80515	0.024909	1.1623E-05	-2.0613	-0.0009618	-2.0364	-0.00095018	466.60793572858927	100.17	2.0135	100.17	99.98	101.99	0					84	47	2	0	0	0	1.0764	1	12881	12881		17.833	3.7471	1	846240	+		63632	25401	44818	44881	68858	68858					0.12262041493909237
QPLAMSRSD	9	Unmodified	_QPLAMSRSD_					0	0	0			REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	REV__ENST00000485134.1_1_1:158911778-158914889:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76629638671875	2	502.745116	1003.47568	0.25005	0.00012571	-3.4856	-0.0017524	-3.2355	-0.0016266	502.74499966115394	58.693	0.18749	58.506	58.424	58.611	-0.18705					6	4	2	0	0	0	0.024506	1	6622	6622		16.473	0	1	75422	+		63633	25594	44819	44882	68859	68859					-0.025919508479773867
QPLAPSGLTL	10	Unmodified	_QPLAPSGLTL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000476218.1_1_7:75508475-75509583:+|nuORF	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7900695800781	2	498.78985	995.565146	-0.37378	-0.00018644	0.75728	0.00037772	0.38349	0.00019128	498.7899686984484	73.265	0.81811	73.265	72.698	73.516	0					54	20	4	0	0	0	0.37169	2	8927	8927;8940		101.6	16.685	1	3616000			63634	772	44820	44883	68860;68861	68860					0.06718627103043673
QPLAPSGLTL	10	Unmodified	_QPLAPSGLTL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000476218.1_1_7:75508475-75509583:+|nuORF	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.79052734375	2	498.78985	995.565146	-0.30819	-0.00015372	0.61061	0.00030457	0.30242	0.00015084	498.789931250858	73.524	0.73474	73.252	72.842	73.577	-0.27126					51	18	4	0	0	0	0.26127	3	8949	8937;8949;8961		113.41	25.657	1	3521300			63635	772	44820	44883	68862;68863;68864	68863					0.06718627103043673
QPLAPSGLTL	10	Unmodified	_QPLAPSGLTL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000476218.1_1_7:75508475-75509583:+|nuORF	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7899169921875	2	498.78985	995.565146	-0.11938	-5.9544E-05	0.5248	0.00026176	0.40542	0.00020222	498.78987754002395	73.259	0.82208	73.268	72.735	73.558	0.0096588					52	20	4	0	0	0	0.19121	2	8854	8854;8867		122.18	34.422	1	3580100			63636	772	44820	44883	68865;68866	68865					0.06718627103043673
QPLARAQPAV	10	Unmodified	_QPLARAQPAV_					0	0	0		ENSG00000159840|ENST00000322764|ZYX;nc|ENSG00000159840|Q15942-2|ZYX	ENSG00000159840|ENST00000322764|ZYX	ENSG00000159840|ENST00000322764|ZYX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7950439453125	2	525.806365	1049.59818	-0.45487	-0.00023918	-1.0996	-0.00057816	-1.5544	-0.00081733	525.8058201435216	31.348	0.33691	31.107	30.995	31.332	-0.24109					17	8	3	0	0	0	0.03519	1	2065	2065		32.812	0	1	470570			63637	6770	44821	44884	68867	68867					0.07536253945750104
QPLARAQPAV	10	Unmodified	_QPLARAQPAV_					0	0	0		ENSG00000159840|ENST00000322764|ZYX;nc|ENSG00000159840|Q15942-2|ZYX	ENSG00000159840|ENST00000322764|ZYX	ENSG00000159840|ENST00000322764|ZYX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.806365	1049.59818	-0.45082	-0.00023704	-1.8821	-0.00098964	-2.3329	-0.0012267	525.8052860238489	31.273	0.26076	31.088	30.984	31.245	-0.18503	-0.0097384	-0.00058823	NaN	19.104	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429590			63638	6770	44821	44884							0.07536253945750104
QPLARPNTL	9	Unmodified	_QPLARPNTL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.27044677734375	2	505.293091	1008.57163	-0.022001	-1.1117E-05	-0.16243	-8.2072E-05	-0.18443	-9.3189E-05	505.2928176968822	40.743	0.56805	40.743	40.551	41.119	0					38	15	3	0	0	0	0.024397	1	3615	3615		39.253	13.803	1	732410			63639	3304	44822	44885	68868	68868					0.06768565054414921
QPLARPNTL	9	Unmodified	_QPLARPNTL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.2704162597656	2	505.293091	1008.57163	-0.19224	-9.7136E-05	-0.21118	-0.00010671	-0.40342	-0.00020384	505.2928355338936	40.938	0.69721	40.961	40.696	41.394	0.023006					42	19	3	0	0	0	0.024397	1	3578	3578		39.253	0.23134	1	697610			63640	3304	44822	44885	68869	68869					0.06768565054414921
QPLATGLPTV	10	Unmodified	_QPLATGLPTV_					0	0	0		nc|ENSG00000107807|P31314-2|TLX1;ENSG00000107807|ENST00000370196|TLX1	nc|ENSG00000107807|P31314-2|TLX1	nc|ENSG00000107807|P31314-2|TLX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.79022216796875	2	498.78985	995.565146	-0.37378	-0.00018644	0.75728	0.00037772	0.38349	0.00019128	498.7899686984484	73.265	0.81811	73.265	72.698	73.516	0					54	20	4	0	0	0	0.66532	1	8964	8964		69.628	7.5202	1	3616000			63641	2858	44823	44886	68870	68870					0.06718627103032304
QPLDCQMRLC	10	Unmodified	_QPLDCQMRLC_					0	0	0		ENST00000544280.6_1_14:90864765-90866413:+|nuORF;ENST00000553964.5_1_14:90864321-90864954:+|nuORF	ENST00000544280.6_1_14:90864765-90866413:+|nuORF	ENST00000544280.6_1_14:90864765-90866413:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.8395080566406	3	402.85245	1205.53552	-1.6487	-0.00066419	1.0791	0.00043473	-0.56957	-0.00022945	403.187842954636	21.39	0.49242	21.177	20.822	21.315	-0.2128					17	9	3	0	0	0	0.03519	1	649	649		24.232	8.59	1	23223			63642	16477	44824	44887	68871	68871					-0.05902719500591047
QPLESLGAAL	10	Unmodified	_QPLESLGAAL_					0	0	0		ENST00000567461.5_1_15:45879535-45879721:+|nuORF;ENST00000220531.7_1_15:45879535-45884339:+|nuORF;ENST00000567740.5_1_15:45879535-45897659:+|nuORF;ENST00000564080.1_1_15:45879550-45951252:+|nuORF	ENST00000567461.5_1_15:45879535-45879721:+|nuORF	ENST00000567461.5_1_15:45879535-45879721:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	499.779482	997.544411	0.48432	0.00024205	-2.722	-0.0013604	-2.2376	-0.0011183	499.777994906374	19.578	0.66344	19.578	19.414	20.078	0					22	13	2	0	0	0	0.03519	1	410	410		33.922	2.3918	1	82840			63643	11177	44825	44888	68872	68872					0.04554036723357058
QPLESLGAAL	10	Unmodified	_QPLESLGAAL_					0	0	0		ENST00000567461.5_1_15:45879535-45879721:+|nuORF;ENST00000220531.7_1_15:45879535-45884339:+|nuORF;ENST00000567740.5_1_15:45879535-45897659:+|nuORF;ENST00000564080.1_1_15:45879550-45951252:+|nuORF	ENST00000567461.5_1_15:45879535-45879721:+|nuORF	ENST00000567461.5_1_15:45879535-45879721:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.779482	997.544411	-0.30889	-0.00015438	-0.25938	-0.00012963	-0.56827	-0.00028401	499.77833279702395	19.814	0.76781	19.695	19.495	20.263	-0.11872	0.058606	0.0021954	NaN	33.922	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77697			63644	11177	44825	44888							0.04554036723357058
QPLETTKAH	9	Unmodified	_QPLETTKAH_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.3138427734375	2	512.774731	1023.53491	-0.76383	-0.00039167	1.7513	0.00089804	0.98751	0.00050637	512.7749879869946	50.372	0.1042	50.372	50.307	50.411	0					4	2	2	0	0	0	0.024447	1	5270	5270		32.812	0	1	111890	+		63645	27537	44826	44889	68873	68873					0.024082684378413433
QPLFLLAEL	9	Unmodified	_QPLFLLAEL_					0	0	0			REV__nc|ENSG00000095397|Q9P202-4|WHRN	REV__nc|ENSG00000095397|Q9P202-4|WHRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7652587890625	2	522.310418	1042.60628	0.20474	0.00010694	-0.365	-0.00019064	-0.16026	-8.3704E-05	522.3103476358489	99.76	0.46883	99.755	99.388	99.857	-0.0050888					13	10	2	0	0	0	0.024021	1	12647	12647		58.782	5.4305	1	71055	+		63646	36509	44827	44890	68874	68874					0.08668388142518779
QPLFPTCFPPE	11	Unmodified	_QPLFPTCFPPE_					0	0	0		ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2348937988281	3	425.874125	1274.60055	-1.3455	-0.00057301	3.3158	0.0014121	1.9703	0.00083911	425.8754094803732	28.723	0.66681	28.723	28.406	29.073	0					25	15	2	0	0	0	0.02477	1	1651	1651		22.562	0.78116	1	37977			63647	1978	44828	44891	68875	68875					-0.02577078431454538
QPLFPTCFPPE	11	Unmodified	_QPLFPTCFPPE_					0	0	0		ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	425.874125	1274.60055	-0.60171	-0.00025625	3.2004	0.001363	2.5987	0.0011067	425.8751774055245	28.748	0.6272	28.744	28.458	29.085	-0.0042019	0.051907	0.0017097	NaN	21.78	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37094			63648	1978	44828	44891							-0.02577078431454538
QPLFPTCFPPE	11	Unmodified	_QPLFPTCFPPE_					0	0	0		ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	425.874125	1274.60055	-0.14364	-6.1172E-05	-0.12633	-5.3801E-05	-0.26997	-0.00011497	425.8739941624285	28.759	0.42172	28.608	28.361	28.783	-0.151	-0.083194	-0.0025406	NaN	21.78	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40713			63649	1978	44828	44891							-0.02577078431454538
QPLFRVPK	8	Unmodified	_QPLFRVPK_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7792663574219	2	492.803094	983.591636	-0.077628	-3.8255E-05	-0.24577	-0.00012112	-0.3234	-0.00015937	492.80285241045874	49.931	0.52134	49.931	49.656	50.178	0					33	14	3	0	0	0	0.027866	1	5181	5181		31.955	0	1	980840	+		63650	22435	44829	44892	68876	68876					0.09918360785036384
QPLLREVL	8	Unmodified	_QPLLREVL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.300537109375	2	484.300384	966.586216	0.38668	0.00018727	-0.67774	-0.00032823	-0.29106	-0.00014096	484.30006087047553	60.234	1.7019	60.037	59.689	61.391	-0.19742					117	42	5	0	0	0	0.62178	3	6713	6701;6713;6726		74.255	9.2347	1	25202000			63651	2463	44830	44893	68877;68878;68879	68878					0.10158637202562204
QPLLREVL	8	Unmodified	_QPLLREVL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.3003845214844	2	484.300384	966.586216	-0.20791	-0.00010069	-0.083279	-4.0332E-05	-0.29119	-0.00014102	484.3003784064443	60.118	1.5345	59.941	59.629	61.164	-0.1761					117	38	6	0	0	0	0.4075	3	6683	6683;6706;6719		96.19	11.275	1	23066000			63652	2463	44830	44893	68880;68881;68882	68880					0.10158637202562204
QPLLREVL	8	Unmodified	_QPLLREVL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.30035400390625	2	484.300384	966.586216	-0.14615	-7.0783E-05	-0.31804	-0.00015403	-0.46419	-0.00022481	484.3002610097709	60.256	1.6236	60.007	59.685	61.308	-0.2495					102	40	5	0	0	0	0.89627	3	6695	6695;6707;6721		51.335	7.2187	1	21556000			63653	2463	44830	44893	68883;68884;68885	68883					0.10158637202562204
QPLLREVL	8	Unmodified	_QPLLREVL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.300384	966.586216	0.41536	0.00020116	0.24056	0.0001165	0.65592	0.00031766	484.3000553175562	60.047	1.1386	60.047	59.745	60.884	0	0.023438	0.00047306	NaN	96.19	51	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2062500			63654	2463	44830	44893							0.10158637202562204
QPLLREVL	8	Unmodified	_QPLLREVL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.300384	966.586216	-0.46969	-0.00022747	1.1169	0.00054093	0.64724	0.00031346	484.30050387355766	60.273	0.67293	60.073	59.761	60.434	-0.20024	0.048765	0.0013219	NaN	96.19	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1543100			63655	2463	44830	44893							0.10158637202562204
QPLLREVL	8	Unmodified	_QPLLREVL_					0	0	0		ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENSG00000103061|ENST00000263997|SLC7A6OS	ENSG00000103061|ENST00000263997|SLC7A6OS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.300384	966.586216	-1.4416	-0.00069815	1.0973	0.00053142	-0.34427	-0.00016673	484.30098125890186	59.96	0.74382	60.039	59.721	60.465	0.078888	0.014946	0.0013029	NaN	96.19	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1690700			63656	2463	44830	44893							0.10158637202562204
QPLLVPLLGG	10	Unmodified	_QPLLVPLLGG_					0	0	0			REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.78955078125	2	503.81841	1005.62227	-0.041725	-2.1022E-05	-0.33914	-0.00017086	-0.38086	-0.00019189	503.8181233942592	42.302	0.45689	42.179	41.961	42.417	-0.12299					22	11	3	0	0	0	0.03519	1	3788	3788		11.511	0	1	181230	+		63657	36188	44831	44894	68886	68886					0.11968094379426475
QPLPARCGM	9	Unmodified	_QPLPARCGM_					0	0	0			REV__ENST00000361786.6_1_14:77580339-77580402:+|nuORF	REV__ENST00000361786.6_1_14:77580339-77580402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.29034423828125	2	486.741322	971.468092	-0.62768	-0.00030552	1.3761	0.00066982	0.74846	0.00036431	486.7431663968314	27.56	0.14477	27.56	27.471	27.616	0					5	3	2	0	0	0	0.024183	1	1517	1517		31.955	7.7521	1	87506	+		63658	30950	44832	44895	68887	68887					-0.01878381649248695
QPLPEELSH	9	Unmodified	_QPLPEELSH_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7953491210938	2	525.266739	1048.51892	-0.040209	-2.112E-05	2.3688	0.0012442	2.3286	0.0012231	525.2685309718411	52.373	0.63067	52.465	52.079	52.71	0.091938					19	15	2	0	0	0	0.024487	1	5480	5480		17.365	0	1	161610	+		63659	27554	44833	44896	68888	68888					-0.00339437799038933
QPLPLLTWKR	10	Unmodified	_QPLPLLTWKR_					0	0	0		ENST00000600659.2_1_19:8387846-8388053:+|nuORF	ENST00000600659.2_1_19:8387846-8388053:+|nuORF	ENST00000600659.2_1_19:8387846-8388053:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.3797607421875	2	626.38224	1250.74993	-1.3509	-0.00084619	-2.8778	-0.0018026	-4.2287	-0.0026488	626.3803519046847	104.49	0.97306	104.36	104.02	105	-0.12928					86	31	4	0	0	0	1.118	1	13050	13050		30.318	2.4355	1	2188000			63660	17501	44834	44897	68889	68889					0.13458234973427352
QPLPQEELD	9	Unmodified	_QPLPQEELD_					0	0	0		ENSG00000178372|ENST00000380332|CALML5	ENSG00000178372|ENST00000380332|CALML5	ENSG00000178372|ENST00000380332|CALML5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.3038330078125	2	534.764029	1067.5135	-1.1248	-0.00060149	-2.667	-0.0014262	-3.7917	-0.0020277	534.7624565942583	34.77	0.33834	34.82	34.682	35.02	0.050255					11	8	2	0	0	0	0.024427	1	2588	2588		34.173	0	1	99793			63661	8808	44835	44898	68890	68890					-0.017551613815157907
QPLQQLLAP	9	Unmodified	_QPLQQLLAP_					0	0	0			REV__ENST00000319363.10_1_22:17584448-17585644:+|nuORF	REV__ENST00000319363.10_1_22:17584448-17585644:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.23846435546875	2	504.297842	1006.58113	1.2716	0.00064125	-1.7218	-0.00086829	-0.4502	-0.00022704	504.2968803198426	63.271	1.2393	63.325	62.599	63.838	0.054104					68	32	4	0	0	0	0.024405	1	7346	7346		27.882	0	1	1062800	+		63662	30324	44836	44899	68891	68891					0.07810333339944009
QPLRALPD	8	Unmodified	_QPLRALPD_					0	0	0			REV__ENSG00000129292|ENST00000395386|PHF20L1	REV__ENSG00000129292|ENST00000395386|PHF20L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.7347717285156	2	455.261259	908.507966	0.26494	0.00012062	0.15892	7.2349E-05	0.42386	0.00019297	455.2611684057174	32.246	0.64996	32.053	31.685	32.335	-0.19262					29	14	4	0	0	0	0.027866	1	2221	2221		20.947	0	1	261810	+		63663	23042	44837	44900	68892	68892					0.050052046173163944
QPLSLEEL	8	Unmodified	_QPLSLEEL_					0	0	0		ENSG00000174243|ENST00000308025|DDX23;ENST00000551098.5_1_12:49231704-49245869:-|nuORF;ENST00000553182.5_1_12:49231126-49245869:-|nuORF	ENSG00000174243|ENST00000308025|DDX23	ENSG00000174243|ENST00000308025|DDX23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.27227783203125	2	464.752933	927.491313	-0.37842	-0.00017587	-1.9989	-0.000929	-2.3773	-0.0011049	464.75287968976795	20.583	0.24526	20.478	20.277	20.522	-0.10477					6	4	2	0	0	0	0.027866	1	544	544		63.306	15.391	1	5906.9			63664	8456	44838	44901	68893	68893					0.024666589407161155
QPLSVLTLL	9	Unmodified	_QPLSVLTLL_					0	0	0			REV__ENST00000372921.9_1_10:75148159-75156954:-|nuORF	REV__ENST00000372921.9_1_10:75148159-75156954:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7816162109375	2	492.310418	982.606283	-0.3513	-0.00017295	-2.8854	-0.0014205	-3.2367	-0.0015935	492.3088250159047	32.447	0.75581	32.447	32.224	32.979	0					45	19	3	0	0	0	0.02435	1	2331	2331		34.173	0	1	978800	+		63665	31223	44839	44902	68894	68894					0.11428388142508084
QPLTQRLS	8	Unmodified	_QPLTQRLS_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.31243896484375	2	471.771991	941.529429	-0.49377	-0.00023295	3.9582	0.0018673	3.4644	0.0016344	471.7714412474734	44.922	0.43502	44.669	44.391	44.826	-0.25252					29	10	4	0	0	0	0.027866	1	4228	4228		37.159	8.0096	1	326910			63666	857	44840	44903	68895	68895					0.05632589646052111
QPMKPLNL	8	Unmodified	_QPMKPLNL_					0	0	0		ENST00000264992.7_1_3:130744352-130745363:-|nuORF;ENST00000514044.5_1_3:130744352-130745597:-|nuORF	ENST00000264992.7_1_3:130744352-130745363:-|nuORF	ENST00000264992.7_1_3:130744352-130745363:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2796325683594	2	470.767863	939.521173	0.82708	0.00038936	-3.6769	-0.001731	-2.8498	-0.0013416	470.76576562864375	75.829	0.71432	75.84	75.61	76.325	0.011642					35	18	3	0	0	0	0.027866	1	9219	9219		12.207	0	1	824020			63667	11580	44841	44904	68896	68896					0.04899319405046754
QPMRAGEP	8	Unmodified	_QPMRAGEP_					0	0	0		ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.74005126953125	2	443.215995	884.417436	0.32952	0.00014605	0.025968	1.1509E-05	0.35548	0.00015756	443.2158345910482	25.151	2.9768	25.231	23.565	26.542	0.08009					130	68	3	0	0	0	0.027866	1	1160	1160		10.866	0	1	462060			63668	16618	44842	44905	68897	68897					-0.029395877025990558
QPNASRLK	8	Unmodified	_QPNASRLK_					0	0	0			REV__ENSG00000016391|ENST00000315251|CHDH	REV__ENSG00000016391|ENST00000315251|CHDH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.264404296875	2	457.264333	912.514114	-0.063831	-2.9188E-05	0.38004	0.00017378	0.31621	0.00014459	457.2643951564857	94.372	1.3211	94.224	93.738	95.059	-0.14771					69	30	5	0	0	0	0.95679	1	11631	11631		44.117	5.3107	1	1332600	+		63669	19972	44843	44906	68898	68898					0.05435722848858404
QPNEAVVKQK	10	Unmodified	_QPNEAVVKQK_					0	0	0			REV__ENSG00000161647|ENST00000398389|MPP3	REV__ENSG00000161647|ENST00000398389|MPP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8216552734375	2	570.822212	1139.62987	-0.72362	-0.00041306	-0.091169	-5.2042E-05	-0.81479	-0.0004651	570.8222005781987	51.853	1.6926	51.853	51.431	53.124	0					140	45	6	0	0	0	0.94316	1	5511	5511		51.193	0	1	15201000	+		63670	25393	44844	44907	68899	68899					0.06564201909031908
QPNIQLILRAE	11	Unmodified	_QPNIQLILRAE_					0	0	0		ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24	ENSG00000008838|ENST00000394128|MED24	ENSG00000008838|ENST00000394128|MED24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.72967529296875	3	432.254105	1293.74048	-0.29195	-0.0001262	-1.49	-0.00064408	-1.782	-0.00077027	432.2535010297052	39.386	0.66897	39.222	38.829	39.498	-0.16459					28	17	3	0	0	0	0.024759	1	3294	3294		23.378	4.1152	1	464240			63671	852	44845	44908	68900	68900					0.10536421897290893
QPNPLPLRL	9	Unmodified	_QPNPLPLRL_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.31982421875	2	524.319109	1046.62366	-1.1378	-0.00059656	1.4833	0.00077773	0.34553	0.00018117	524.3197398547991	64.666	0.79035	64.403	64.083	64.873	-0.2626					47	20	4	0	0	0	0.85329	1	7598	7598		35.618	2.8059	1	1160900			63672	1642	44846	44909	68901	68901					0.10221728468172842
QPNQVDFIW	9	Unmodified	_QPNQVDFIW_					0	0	0			REV__nc|ENSG00000135218|P16671-2|CD36	REV__nc|ENSG00000135218|P16671-2|CD36	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.7821044921875	2	573.782556	1145.55056	-0.37208	-0.00021349	-0.0020392	-1.17E-06	-0.37411	-0.00021466	573.7826166563825	64.424	3.778	64.168	62.634	66.412	-0.25563					213	95	4	0	0	0	0.31247	1	7345	7345		73.975	7.5455	1	6621900	+		63673	23520	44847	44910	68902	68902					-0.016394450450889053
QPNTHLPE	8	Unmodified	_QPNTHLPE_					0	0	0		ENSG00000180509|ENST00000399286|KCNE1	ENSG00000180509|ENST00000399286|KCNE1	ENSG00000180509|ENST00000399286|KCNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7386779785156	2	468.232699	934.450845	-0.11973	-5.6063E-05	-2.5893	-0.0012124	-2.709	-0.0012684	468.2323540388087	25.973	0.43481	25.802	25.581	26.016	-0.17078					21	12	2	0	0	0	0.027866	1	1319	1319		20.947	6.0821	1	292430			63674	8983	44848	44911	68903	68903					-0.019002626590577165
QPNTTGKQL	9	Unmodified	_QPNTTGKQL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;nc|ENSG00000137710|P35241-3|RDX;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7664794921875	2	493.766906	985.519259	-0.36198	-0.00017873	0.24766	0.00012228	-0.11433	-5.6451E-05	493.76694454775526	24.837	1.0085	24.837	24.518	25.527	0					64	23	4	0	0	0	0.22902	1	1124	1124		85.161	11.186	1	1070300			63675	1995	44849	44912	68904	68904					0.025919819208070294
QPPCPDAERGM	11	Carbamidomethyl (C),Oxidation (M)	_QPPC(Carbamidomethyl (C))PDAERGM(Oxidation (M))_	QPPC(1)PDAERGM	QPPCPDAERGM(1)	QPPC(42)PDAERGM	QPPCPDAERGM(42)	0	1	1			REV__ENST00000568703.5_1_16:28935825-28935969:-|nuORF	REV__ENST00000568703.5_1_16:28935825-28935969:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.18206787109375	3	425.181512	1272.52271	-0.15973	-6.7915E-05	-0.51354	-0.00021835	-0.67327	-0.00028626	425.1819097550231	34.648	1.5149	34.472	34.05	35.565	-0.17557					132	38	6	0	0	0	0.97516	1	2553	2553		42.338	9.2987	1	51754000	+		63676	35353	44850	44913	68905	68905	459	955			-0.10265459359152374
QPPDWLALGH	10	Unmodified	_QPPDWLALGH_					0	0	0			REV__ENST00000371564.7_1_20:50139799-50140015:-|nuORF	REV__ENST00000371564.7_1_20:50139799-50140015:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.82958984375	2	567.290548	1132.56654	-0.69872	-0.00039638	0.92643	0.00052556	0.22771	0.00012918	567.2906887912992	49.91	0.36372	49.91	49.656	50.02	0					15	9	2	0	0	0	0.03519	1	5201	5201		20.947	11.241	1	127820	+		63677	31167	44851	44914	68906	68906					0.005562611917639515
QPPDWLALGH	10	Unmodified	_QPPDWLALGH_					0	0	0			REV__ENST00000371564.7_1_20:50139799-50140015:-|nuORF	REV__ENST00000371564.7_1_20:50139799-50140015:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.8296508789062	2	567.290548	1132.56654	-1.3918	-0.00078957	0.69169	0.00039239	-0.70014	-0.00039718	567.2914624486613	49.789	0.4002	49.863	49.615	50.016	0.074192					22	10	3	0	0	0	0.03519	1	5114	5114		35.618	16.258	1	169750	+		63678	31167	44851	44914	68907	68907					0.005562611917639515
QPPGGAGIN	9	Unmodified	_QPPGGAGIN_					0	0	0			REV__ENSG00000177613|ENST00000331173|CSTF2T	REV__ENSG00000177613|ENST00000331173|CSTF2T	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58746337890625	2	405.70886	809.403166	0.49559	0.00020106	-1.3914	-0.00056449	-0.89577	-0.00036342	405.7086513169903	25.437	0.20725	25.267	25.163	25.371	-0.17078					6	4	2	0	0	0	0.024354	1	1210	1210		47.916	5.4411	1	31220	+		63679	27129	44852	44915	68908	68908					-0.00915916859241861
QPPGPKVLRKL	11	Unmodified	_QPPGPKVLRKL_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5633239746094	3	411.599435	1231.77648	0.030185	1.2424E-05	-0.75975	-0.00031271	-0.72957	-0.00030029	411.59960701765254	32.595	0.15942	32.358	32.258	32.417	-0.23666					5	3	2	0	0	0	0.024834	1	2254	2254		23.378	6.2112	1	75245			63680	1690	44853	44916	68909	68909					0.16985923864785946
QPPHCVPDT	9	Unmodified	_QPPHCVPDT_					0	0	0		ENST00000484751.1_1_7:66410067-66416200:+|nuORF;ENSG00000106609|ENST00000341567|TMEM248	ENST00000484751.1_1_7:66410067-66416200:+|nuORF	ENST00000484751.1_1_7:66410067-66416200:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2686462402344	2	497.226559	992.438566	-0.1678	-8.3433E-05	3.9103	0.0019443	3.7425	0.0018609	497.2282557224214	36.879	0.35722	36.917	36.684	37.041	0.038044					10	8	2	0	0	0	0.024457	1	2888	2888		37.159	5.2042	1	44883			63681	15311	44854	44917	68910	68910					-0.05795622393736721
QPPHGAPHRG	10	Unmodified	_QPPHGAPHRG_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2984008789062	2	527.270481	1052.52641	0.71764	0.00037839	-2.3683	-0.0012487	-1.6507	-0.00087035	527.26892019704	54.345	1.3745	54.443	53.808	55.183	0.098015					100	39	4	0	0	0	0.03519	1	5964	5964		26.693	3.6504	1	7341800			63682	9722	44855	44918	68911	68911					0.002247593118909208
QPPHGAPHRG	10	Unmodified	_QPPHGAPHRG_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.270481	1052.52641	-0.57806	-0.00030479	-1.4687	-0.00077438	-2.0467	-0.0010792	527.2692478768283	54.622	1.013	54.476	54.208	55.221	-0.14609	-0.027463	0.00095477	NaN	19.997	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309990			63683	9722	44855	44918							0.002247593118909208
QPPHGAPHRG	10	Unmodified	_QPPHGAPHRG_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.270481	1052.52641	-0.25944	-0.00013679	-2.6946	-0.0014208	-2.954	-0.0015576	527.2688315786237	54.741	0.71657	54.51	54.315	55.032	-0.23087	0.0061683	-0.00033798	NaN	19.997	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395150			63684	9722	44855	44918							0.002247593118909208
QPPHGAPHRG	10	Unmodified	_QPPHGAPHRG_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.270481	1052.52641	0.73158	0.00038574	-3.4164	-0.0018014	-2.6848	-0.0014156	527.2684954192358	54.726	1.0399	54.52	54.237	55.277	-0.20613	0.016152	-0.0010992	NaN	19.997	44	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304930			63685	9722	44855	44918							0.002247593118909208
QPPHIKKSL	9	Unmodified	_QPPHIKKSL_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.3194580078125	2	524.319109	1046.62366	-1.1378	-0.00059656	1.4833	0.00077773	0.34553	0.00018117	524.3197398547991	64.666	0.79035	64.403	64.083	64.873	-0.2626					47	20	4	0	0	0	0.98462	1	7611	7611		23.523	0.48021	1	1160900			63686	10177	44856	44919	68912	68912					0.10221728468172842
QPPHIKKSL	9	Unmodified	_QPPHIKKSL_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.3197631835938	2	524.319109	1046.62366	0.26451	0.00013869	-0.090499	-4.745E-05	0.17401	9.1235E-05	524.3189345743555	64.382	0.81938	64.427	64.117	64.937	0.045502					49	21	3	0	0	0	0.92825	1	7509	7509		30.504	2.6214	1	1214100			63687	10177	44856	44919	68913	68913					0.10221728468172842
QPPLAPHQV	9	Unmodified	_QPPLAPHQV_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.30767822265625	2	493.774534	985.534515	-0.28937	-0.00014288	-0.46809	-0.00023113	-0.75746	-0.00037401	493.7742655236497	79.072	0.62262	78.899	78.653	79.275	-0.17226					31	14	4	0	0	0	0.024541	1	9797	9797		21.96	4.5949	1	377070	+		63688	20914;37796	44857	44920	68914	68914					0.04116893508660269
QPPLAPHQV	9	Unmodified	_QPPLAPHQV_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.774534	985.534515	-0.086346	-4.2635E-05	-0.72954	-0.00036023	-0.81588	-0.00040286	493.77411034784984	78.897	0.49834	78.916	78.693	79.192	0.018669	0.054641	-6.7573E-05	NaN	21.96	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380900	+		63689	20914;37796	44857	44920							0.04116893508660269
QPPLAPHQV	9	Unmodified	_QPPLAPHQV_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.774534	985.534515	-0.016103	-7.9512E-06	-0.051302	-2.5332E-05	-0.067405	-3.3283E-05	493.77436691355416	79.05	0.25221	78.796	78.687	78.939	-0.25471	-0.065393	0.00060222	NaN	21.96	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46336	+		63690	20914;37796	44857	44920							0.04116893508660269
QPPLAPHQV	9	Unmodified	_QPPLAPHQV_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.774534	985.534515	0.1564	7.7224E-05	-1.5127	-0.00074693	-1.3563	-0.0006697	493.7742475202701	78.909	0.25255	78.753	78.645	78.897	-0.15591	-0.10831	-0.00084097	NaN	21.96	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60724	+		63691	20914;37796	44857	44920							0.04116893508660269
QPPLLSISS	9	Unmodified	_QPPLLSISS_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2674255371094	2	471.26875	940.522947	-0.41586	-0.00019598	-2.6971	-0.001271	-3.1129	-0.001467	471.26736415929287	20.296	0.87119	20.296	20.028	20.9	0					37	17	3	0	0	0	0.72875	1	518	518		44.117	5.3107	1	324300			63692	3561	44858	44921	68915	68915					0.0503065169467618
QPPLLSISS	9	Unmodified	_QPPLLSISS_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.26875	940.522947	-0.072223	-3.4036E-05	-2.9221	-0.0013771	-2.9943	-0.0014111	471.2672748724667	20.519	0.76789	20.414	20.227	20.995	-0.10477	0.058974	-0.00011791	NaN	44.117	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321760			63693	3561	44858	44921							0.0503065169467618
QPPNDSRL	8	Unmodified	_QPPNDSRL_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7380065917969	2	463.738148	925.461744	-0.49007	-0.00022727	0.46979	0.00021786	-0.02028	-9.4046E-06	463.7382331957575	32.156	1.3814	32.156	31.869	33.251	0					54	35	2	0	0	0	0.94517	1	2204	2204		45.952	1.4209	1	1797600			63694	949	44859	44922	68916	68916					-0.003968602847749025
QPPPHPLCL	9	Unmodified	_QPPPHPLCL_					0	0	0		ENST00000527372.6_2_17:27400982-27401243:-|nuORF	ENST00000527372.6_2_17:27400982-27401243:-|nuORF	ENST00000527372.6_2_17:27400982-27401243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7882385253906	2	501.265487	1000.51642	-0.57362	-0.00028753	-4.1208	-0.0020656	-4.6944	-0.0023531	501.2622416442961	32.449	0.52643	32.461	32.104	32.63	0.011799					27	13	3	0	0	0	0.024357	1	2192	2192		44.531	0	1	548960			63695	16150	44860	44923	68917	68917					0.016184352622758524
QPPPPLLEL	9	Unmodified	_QPPPPLLEL_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2909240722656	2	502.294768	1002.57498	-0.17109	-8.594E-05	-3.9964	-0.0020074	-4.1675	-0.0020933	502.29269734669543	54.987	0.94468	54.756	54.246	55.19	-0.23087					50	26	2	0	0	0	0.024495	1	5868	5868		19.997	12.306	1	1903100	+		63696	21220	44861	44924	68918	68918					0.07379815108413368
QPPPPPPQQL	10	Unmodified	_QPPPPPPQQL_					0	0	0		ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.798828125	2	549.800749	1097.58694	-1.2836	-0.00070572	-1.852	-0.0010182	-3.1356	-0.0017239	549.7994831839148	21.838	1.3483	21.91	21.303	22.651	0.071489					83	27	5	0	0	0	0.71272	1	668	668		66.429	4.3219	1	599280			63697	5603	44862	44925	68919	68919					0.04205431851596586
QPPPRRLS	8	Unmodified	_QPPPRRLS_					0	0	0			REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	REV__nc|ENSG00000082153|Q7L1Q6-3|BZW1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.77947998046875	2	475.780151	949.545748	0.6774	0.0003223	-0.48559	-0.00023103	0.19182	9.1262E-05	475.77969282192964	18.36	0.39476	18.228	18.056	18.45	-0.13147					12	7	2	0	0	0	1.0198	1	269	269		34.173	0.65696	1	121740	+		63698	36485	44863	44926	68920	68920					0.06895715602797736
QPPPVTYQPQQ	11	Unmodified	_QPPPVTYQPQQ_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2209167480469	3	428.21906	1281.63535	0.16465	7.0506E-05	0.75014	0.00032123	0.91479	0.00039173	428.2193814912294	27.528	1.4615	27.371	27.104	28.565	-0.15664					84	35	5	0	0	0	1.053	1	1495	1495		24.276	0.04411	1	2370900			63699	6228	44864	44927	68921	68921					0.00579880700843205
QPPRFNNV	8	Unmodified	_QPPRFNNV_					0	0	0			REV__nc|ENSG00000168748|P43166-2|CA7	REV__nc|ENSG00000168748|P43166-2|CA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31292724609375	2	486.256508	970.498464	0.10201	4.9602E-05	-1.552	-0.00075465	-1.45	-0.00070505	486.2556588272177	39.94	0.47584	39.94	39.771	40.247	0					28	12	3	0	0	0	0.027866	1	3477	3477		25.45	0	1	480720	+		63700	26286	44865	44928	68922	68922					0.012034363317980024
QPPTPRAI	8	Unmodified	_QPPTPRAI_					0	0	0			REV__ENST00000465348.5_1_6:31610527-31611963:-|nuORF	REV__ENST00000465348.5_1_6:31610527-31611963:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2587890625	2	440.255977	878.497401	1.0787	0.0004749	0.32679	0.00014387	1.4055	0.00061877	440.25663029027675	58.783	1.3558	58.596	58.311	59.667	-0.18705					57	36	3	0	0	0	0.027866	1	6626	6626		26.796	13.837	1	725060	+		63701	19197	44866	44929	68923	68923					0.05329221962904285
QPPYPGAPYPQ	11	Unmodified	_QPPYPGAPYPQ_					0	0	0		ENST00000531992.1_1_8:145065475-145065835:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000531992.1_1_8:145065475-145065835:+|nuORF	ENST00000531992.1_1_8:145065475-145065835:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	405.532868	1213.57677	0.73471	0.00029795	2.8449	0.0011537	3.5796	0.0014516	405.53348808376455	26.983	0.17658	27.064	26.96	27.136	0.081291					5	4	2	0	0	0	0.024792	1	1364	1364		34.087	0	1	74068			63702	8833	44867	44930	68924	68924					-0.021471758736424817
QPQDIEIEKL	10	Unmodified	_QPQDIEIEKL_					0	0	0		MSANTD4|p.T295I|1|0.1|ENSG00000170903|chr11:106009689-106009689|G/A|missense_variant	MSANTD4|p.T295I|1|0.1|ENSG00000170903|chr11:106009689-106009689|G/A|missense_variant	MSANTD4|p.T295I|1|0.1|ENSG00000170903|chr11:106009689-106009689|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.9066162109375	3	404.887199	1211.63977	0.85386	0.00034572	-0.019172	-7.7625E-06	0.83468	0.00033795	404.88716598375214	22.316	1.1071	22.39	22.125	23.232	0.073954					58	23	5	0	0	0	0.03519	1	781	781		36.318	0	1	298430			63703	17996	44868	44931	68925	68925					0.042413451237507616
QPQDRAGARA	10	Unmodified	_QPQDRAGARA_					0	0	0		ENSG00000105697|ENST00000222304|HAMP	ENSG00000105697|ENST00000222304|HAMP	ENSG00000105697|ENST00000222304|HAMP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.3037719726562	2	535.278503	1068.54245	-0.97811	-0.00052356	2.8485	0.0015247	1.8703	0.0010012	535.2799412444413	34.86	0.54108	34.86	34.552	35.093	0					20	13	2	0	0	0	0.03519	1	2660	2660		49.442	3.4896	1	225940			63704	2710	44869	44932	68926	68926					0.010924207581410883
QPQFQRQGL	9	Unmodified	_QPQFQRQGL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.2920532226562	2	551.293622	1100.57269	-0.054622	-3.0113E-05	0.17115	9.4353E-05	0.11653	6.4241E-05	551.2935960770661	40.536	0.90649	40.536	40.247	41.153	0					65	25	4	0	0	0	0.29104	1	3581	3581		76.847	12.639	1	3454000			63705	9358	44870	44933	68927	68927					0.02642779423331376
QPQFQRQGL	9	Unmodified	_QPQFQRQGL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2924194335938	2	551.293622	1100.57269	0.38874	0.00021431	-0.31076	-0.00017132	0.077973	4.2986E-05	551.2932769579754	40.687	0.81854	40.564	40.267	41.086	-0.12317					63	22	4	0	0	0	0.22754	1	3580	3580		85.359	19.894	1	3051900			63706	9358	44870	44933	68928	68928					0.02642779423331376
QPQFQRQGL	9	Unmodified	_QPQFQRQGL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.2927856445312	2	551.293622	1100.57269	-0.69594	-0.00038367	0.74521	0.00041083	0.049263	2.7158E-05	551.293920114975	40.726	0.79609	40.749	40.494	41.29	0.023003					70	22	4	0	0	0	0.25032	2	3553	3553;3566		82.305	18.999	1	3561800			63707	9358	44870	44933	68929;68930	68929					0.02642779423331376
QPQGDRDKY	9	Unmodified	_QPQGDRDKY_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7654418945312	2	553.764894	1105.51524	-0.25442	-0.00014089	0.036088	1.9984E-05	-0.21834	-0.00012091	553.7650002490053	25.962	1.0037	25.791	25.413	26.417	-0.17078					73	27	4	0	0	0	0.37611	1	1276	1276		67.494	3.9598	1	1658800	+		63708	26262	44871	44934	68931	68931					-0.033301075729013974
QPQKPPQPQPQ	11	Unmodified	_QPQKPPQPQPQ_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.2381591796875	3	424.894688	1271.66223	0.10495	4.4593E-05	2.3514	0.00099908	2.4563	0.0010437	424.896172066556	22.177	0.24152	21.975	21.855	22.097	-0.20199					6	4	2	0	0	0	0.024748	1	725	725		24.232	4.2013	1	5342.7	+		63709	20914	44872	44935	68932	68932					0.037269893120537745
QPQKQPLKP	9	Unmodified	_QPQKQPLKP_					0	0	0			REV__ENSG00000073050|ENST00000262887|XRCC1	REV__ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.790283203125	2	532.316566	1062.61858	-0.60636	-0.00032277	0.87021	0.00046323	0.26385	0.00014045	532.316611368486	24.025	0.39266	23.845	23.651	24.043	-0.17989					19	8	3	0	0	0	0.024487	1	1027	1027		17.365	0	1	119290	+		63710	20491	44873	44936	68933	68933					0.0897742460556401
QPQLKVFSL	9	Unmodified	_QPQLKVFSL_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9;nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7965087890625	2	530.313492	1058.61243	-0.65663	-0.00034822	-3.8641	-0.0020492	-4.5208	-0.0023974	530.3111413523329	21.877	0.38559	21.686	21.468	21.853	-0.19072					12	7	2	0	0	0	0.024506	1	719	719		23.042	3.6825	1	38652			63711	6572	44874	44937	68934	68934					0.08546906374044738
QPQLQKAAI	9	Unmodified	_QPQLQKAAI_					0	0	0		ENST00000303657.9_1_19:5993631-5994159:-|nuORF	ENST00000303657.9_1_19:5993631-5994159:-|nuORF	ENST00000303657.9_1_19:5993631-5994159:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.2748107910156	2	498.795466	995.57638	-0.42843	-0.0002137	0.52169	0.00026022	0.093259	4.6517E-05	498.79556279419893	20.514	0.6428	20.29	20.02	20.663	-0.22344					20	12	2	0	0	0	0.024381	1	497	497		37.159	0	1	92374			63712	11973	44875	44938	68935	68935					0.07841449197167094
QPQLTQRSG	9	Unmodified	_QPQLTQRSG_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.788330078125	2	507.76998	1013.52541	-0.325	-0.00016502	0.1893	9.6123E-05	-0.13569	-6.8902E-05	507.77047975772876	19.74	0.57001	19.621	19.446	20.016	-0.11872					15	11	2	0	0	0	0.022411	1	475	475		90.37	2.6155	1	15367			63713	799	44876	44939	68936	68936					0.01918500152339675
QPQLTQRSG	9	Unmodified	_QPQLTQRSG_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.76998	1013.52541	2.1647	0.0010992	-1.7292	-0.00087806	0.43549	0.00022113	507.76898947084567	19.693	0.38179	19.759	19.587	19.969	0.066195	0.068754	-0.00077831	NaN	90.37	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33460			63714	799	44876	44939							0.01918500152339675
QPQNALIQV	9	Unmodified	_QPQNALIQV_					0	0	0			REV__ENST00000554990.5_1_14:50911905-50914156:-|nuORF	REV__ENST00000554990.5_1_14:50911905-50914156:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7142333984375	2	505.785099	1009.55564	-0.5979	-0.00030241	-1.4512	-0.00073399	-2.0491	-0.0010364	505.78456909083224	31.45	0.48866	31.297	31.085	31.574	-0.15231					21	12	3	0	0	0	0.024405	1	2077	2077		20.947	0	1	178040	+		63715	35000	44877	44940	68937	68937					0.05124858817521272
QPQPRVRP	8	Unmodified	_QPQPRVRP_					0	0	0		ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.27069091796875	2	489.2856	976.556647	0.0069851	3.4177E-06	-3.1732	-0.0015526	-3.1662	-0.0015492	489.2838635936488	39.25	0.55039	39.25	39.076	39.627	0					22	15	2	0	0	0	0.027866	1	3339	3339		40.573	0	1	378880			63716	4696	44878	44941	68938	68938					0.06743117977089241
QPQQFAYPQ	9	Unmodified	_QPQQFAYPQ_					0	0	0		ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	ENSG00000196428|ENST00000688009|TSC22D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.2251586914062	2	553.766906	1105.51926	-0.25833	-0.00014306	2.8697	0.0015891	2.6113	0.0014461	553.7684821297332	30.746	0.78696	30.595	30.3	31.087	-0.15073					27	18	2	0	0	0	0.024506	1	1935	1935		16.473	0	1	167780			63717	9873	44879	44942	68939	68939					-0.029280180792056854
QPQRGEVD	8	Unmodified	_QPQRGEVD_					0	0	0			REV__ENST00000397703.6_1_8:22941877-22942024:+|nuORF	REV__ENST00000397703.6_1_8:22941877-22942024:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.76922607421875	2	464.727781	927.441008	0.3813	0.0001772	-3.1487	-0.0014633	-2.7674	-0.0012861	464.72703847223886	63.455	0.25816	63.455	63.373	63.631	0					8	6	2	0	0	0	0.027866	1	7435	7435		18.324	3.6603	1	88207	+		63718	31780	44880	44943	68940	68940					-0.02561450664416043
QPQTPMLLL	9	Unmodified	_QPQTPMLLL_					0	0	0		ENST00000445193.7_2_3:58303863-58303956:+|nuORF	ENST00000445193.7_2_3:58303863-58303956:+|nuORF	ENST00000445193.7_2_3:58303863-58303956:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.777099609375	2	520.794078	1039.5736	-0.81848	-0.00042626	2.5073	0.0013058	1.6888	0.00087952	521.2975872154062	27.81	0.70978	27.891	27.498	28.208	0.081291					20	17	2	0	0	0	0.024506	1	1489	1489		38.806	12.01	1	61273			63719	14437	44881	44944	68941	68941					0.05539857748021859
QPQTPMLLL	9	Unmodified	_QPQTPMLLL_					0	0	0		ENST00000445193.7_2_3:58303863-58303956:+|nuORF	ENST00000445193.7_2_3:58303863-58303956:+|nuORF	ENST00000445193.7_2_3:58303863-58303956:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.794078	1039.5736	-0.37342	-0.00019448	4.0198	0.0020935	3.6463	0.001899	520.7958572993342	27.748	0.21501	27.505	27.423	27.638	-0.24217	-0.19282	0.00098001	NaN	30.504	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34275			63720	14437	44881	44944							0.05539857748021859
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2774047851562	2	531.277972	1060.54139	-1.0414	-0.0005533	0.42689	0.0002268	-0.61456	-0.0003265	531.2781409051493	24.061	1.0483	24.061	23.737	24.786	0					53	23	4	0	0	0	0.39228	2	1022	1010;1022		66.429	8.618	1	1340700			63721	13361	44882	44945	68942;68943	68943					0.013542063892145961
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.27734375	2	531.277972	1060.54139	-1.2858	-0.0006831	0.68129	0.00036196	-0.60447	-0.00032114	531.278229574726	24.069	0.74617	24.022	23.741	24.487	-0.047148					45	16	4	0	0	0	0.27161	2	995	995;1007		79.451	18.479	1	1205100			63722	13361	44882	44945	68944;68945	68944					0.013542063892145961
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2775268554688	2	531.277972	1060.54139	-0.23401	-0.00012432	-0.31022	-0.00016481	-0.54422	-0.00028913	531.2777366142676	23.948	0.90097	24.024	23.69	24.591	0.076241					43	19	3	0	0	0	0.25032	2	956	941;956		82.305	18.098	1	1202900			63723	13361	44882	44945	68946;68947	68947					0.013542063892145961
QPRCQWTEWFD	11	Unmodified	_QPRCQWTEWFD_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.9019470214844	3	499.218954	1494.63503	-0.98589	-0.00049218	0.99714	0.00049779	0.01125	5.6161E-06	499.21920574669804	43.872	0.46159	43.727	43.569	44.031	-0.14471					13	12	2	0	0	0	0.02476	1	4147	4147		38.714	1.1142	1	206980			63724	3665	44883	44946	68948	68948					-0.09249862290653255
QPRDHVRPP	9	Unmodified	_QPRDHVRPP_					0	0	0		RSPRY1|p.P80H|1|0.1|ENSG00000159579|chr16:57204897-57204897|C/A|missense_variant	RSPRY1|p.P80H|1|0.1|ENSG00000159579|chr16:57204897-57204897|C/A|missense_variant	RSPRY1|p.P80H|1|0.1|ENSG00000159579|chr16:57204897-57204897|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.300048828125	2	551.299239	1100.58392	-0.42898	-0.0002365	1.3789	0.0007602	0.94995	0.0005237	551.299965520362	26.455	2.1006	26.455	25.009	27.109	0					138	50	5	0	0	0	0.77768	1	1369	1369		40.778	1.5253	1	3830900			63725	37847	44884	44947	68949	68949					0.03765601517466166
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.826904296875	2	615.827495	1229.64044	-0.70345	-0.0004332	0.79038	0.00048674	0.086934	5.3536E-05	615.8279169188987	50.771	0.91378	50.771	50.445	51.359	0					76	25	4	0	0	0	0.37509	1	5356	5356		101.25	21.54	1	4463800			63726	18703	44885	44948	68950	68950					0.03480184563477451
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	615.8265380859375	2	615.827495	1229.64044	-0.18117	-0.00011157	0.26726	0.00016458	0.086084	5.3013E-05	615.8275659984229	50.96	0.83982	50.811	50.495	51.335	-0.14916					76	23	4	0	0	0	0.31896	1	5363	5363		107.01	32.752	1	4396500			63727	18703	44885	44948	68951	68951					0.03480184563477451
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211893|P01859-1|IGHG2	nc|ENSG00000211893|P01859-1|IGHG2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	615.827495	1229.64044	-1.184	-0.00072914	1.2722	0.00078346	0.088217	5.4326E-05	615.8282063981317	50.585	1.0275	50.666	50.377	51.405	0.08099	-0.083136	0.0006016	NaN	107.01	81	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4548600			63728	18703	44885	44948							0.03480184563477451
QPRERETSV	9	Unmodified	_QPRERETSV_					0	0	0			REV__ENSG00000119280|ENST00000366663|C1orf198	REV__ENSG00000119280|ENST00000366663|C1orf198	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2999877929688	2	551.285994	1100.55744	-0.52375	-0.00028874	-1.9712	-0.0010867	-2.495	-0.0013754	551.2848503327538	27.153	1.4407	27.153	25.957	27.398	0					49	35	2	0	0	0	0.023239	1	1356	1356		84.916	0	1	1611400	+		63729	22445	44886	44949	68952	68952					0.011178678354781368
QPRERGGQ	8	Unmodified	_QPRERGGQ_					0	0	0			REV__ENST00000586166.5_2_16:4755229-4784259:-|nuORF	REV__ENST00000586166.5_2_16:4755229-4784259:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7951354980469	2	464.24139	926.468226	-0.24141	-0.00011207	4.2913	0.0019922	4.0499	0.0018801	464.2435236677154	34.564	0.91647	34.357	33.895	34.812	-0.20696					45	22	3	0	0	0	0.027866	1	2484	2484		30.504	3.7075	1	579030	+		63730	35590	44887	44950	68953	68953					0.0020507766662376525
QPRIAALSD	9	Unmodified	_QPRIAALSD_					0	0	0		nc|ENSG00000056487|Q96EK2-4|PHF21B;nc|ENSG00000056487|Q96EK2-3|PHF21B;ENSG00000056487|ENST00000313237|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	MSMS	OPSCC_39_ClassI_Rep-3	3	485.7696228027344	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.312	1	35.356	34.856	35.856	0.04406								0	0	0	0.5792	1	2654	2654		42.396	1.618	1				63731	1197	44888	44951	68954	68954					0.03836285783427229
QPRKATLKS	9	Unmodified	_QPRKATLKS_					0	0	0		ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	ENSG00000119698|ENST00000304338|PPP4R4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7977905273438	2	514.81419	1027.61383	-0.50952	-0.00026231	-0.31832	-0.00016387	-0.82784	-0.00042618	514.8139396087101	26.448	0.45159	26.425	26.283	26.735	-0.023088					17	10	2	0	0	0	0.024292	1	1366	1366		40.778	14.085	1	122370			63732	3756	44889	44952	68955	68955					0.1011254046279646
QPRLKENI	8	Unmodified	_QPRLKENI_					0	0	0			REV__ENSG00000268043|ENST00000698835|NBPF12;REV__nc|ENSG00000269713|P0DPF3-2|NBPF9;REV__nc|ENSG00000219481|Q3BBV0|NBPF1	REV__nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.77288818359375	2	499.293091	996.571629	-1.2593	-0.00062874	0.75051	0.00037473	-0.50874	-0.00025401	499.2935226436087	24.722	0.93556	24.675	24.088	25.024	-0.047148					48	20	4	0	0	0	0.027866	1	1091	1091		53.351	22.848	1	355970	+		63733	29130;29159;37133	44890	44953	68956	68956					0.07320565054419603
QPRLSSIRP	9	Unmodified	_QPRLSSIRP_					0	0	0			REV__ENSG00000184371|ENST00000329608|CSF1	REV__ENSG00000184371|ENST00000329608|CSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2828979492188	2	527.311815	1052.60908	-0.96787	-0.00051037	-0.10277	-5.4194E-05	-1.0706	-0.00056456	527.3117817396353	23.695	0.29856	23.634	23.386	23.685	-0.060862					10	6	2	0	0	0	0.024506	1	923	923		30.504	0	1	23250	+		63734	27664	44891	44954	68957	68957					0.08487656320062342
QPRLSTVMV	9	Oxidation (M)	_QPRLSTVM(Oxidation (M))V_		QPRLSTVM(1)V		QPRLSTVM(66)V	0	0	1			REV__ENST00000585782.1_1_19:3057505-3062198:-|nuORF	REV__ENST00000585782.1_1_19:3057505-3062198:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.7864379882812	2	523.786784	1045.55902	0.2556	0.00013388	-0.33681	-0.00017641	-0.081208	-4.2536E-05	523.7864163803836	16.479	0.25768	16.331	16.231	16.489	-0.14753					20	9	3	0	0	0	0.40179	1	63	63		65.803	16.362	1	76605	+		63735	35584	44892	44955	68958	68958		956			0.03805785599865885
QPRLSTVMV	9	Oxidation (M)	_QPRLSTVM(Oxidation (M))V_					0	0	1			REV__ENST00000585782.1_1_19:3057505-3062198:-|nuORF	REV__ENST00000585782.1_1_19:3057505-3062198:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	523.786784	1045.55902	0.2556	0.00013388	-0.33681	-0.00017641	-0.081208	-4.2536E-05	523.7864163803836	16.479	0.25768	16.331	16.231	16.489	-0.14753	0	0	NaN	65.803	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76605	+		63736	35584	44892	44955				956			0.03805785599865885
QPRNAAKSL	9	Unmodified	_QPRNAAKSL_					0	0	0		ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	ENSG00000123352|ENST00000552918|SPATS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.78271484375	2	492.78289	983.551228	-0.39124	-0.0001928	0.19316	9.5185E-05	-0.19808	-9.7611E-05	492.7830225499618	20.307	0.63772	20.202	19.932	20.569	-0.10477					32	12	4	0	0	0	0.16638	1	511	511		95.815	18.498	1	613720			63737	3971	44893	44956	68959	68959					0.05879394394617066
QPRPEGVL	8	Unmodified	_QPRPEGVL_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.7615966796875	2	448.253434	894.492316	-0.21744	-9.747E-05	0.41775	0.00018726	0.20031	8.979E-05	448.2534455172356	25.691	1.0428	25.52	24.825	25.867	-0.17078					41	25	3	0	0	0	0.027866	1	1201	1201		42.474	20.772	1	718670	+		63738	27967	44894	44957	68960	68960					0.04084918100284085
QPRPKSRGL	9	Unmodified	_QPRPKSRGL_					0	0	0			REV__ENSG00000114790|ENST00000465093|ARHGEF26	REV__ENSG00000114790|ENST00000465093|ARHGEF26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.236083984375	2	519.811982	1037.60941	-0.43517	-0.0002262	-0.58748	-0.00030538	-1.0226	-0.00053158	519.8118958557337	28.307	0.37107	28.138	27.966	28.337	-0.16897					14	8	2	0	0	0	0.024535	1	1615	1615		18.324	0	1	65146	+		63739	22144	44895	44958	68961	68961					0.09211076039900945
QPRPLGAK	8	Unmodified	_QPRPLGAK_					0	0	0			REV__ENSG00000198445|ENST00000359963|CCT8L2	REV__ENSG00000198445|ENST00000359963|CCT8L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.75128173828125	2	433.763969	865.513385	-0.20925	-9.0765E-05	2.6401	0.0011452	2.4308	0.0010544	433.7632689180593	20.243	0.24663	20.139	19.981	20.227	-0.10477					9	4	3	0	0	0	0.027866	1	495	495		17.365	0	1	4685.9	+		63740	28423	44896	44959	68962	68962					0.07524928199802616
QPRPLHASH	9	Unmodified	_QPRPLHASH_					0	0	0			REV__ENSG00000126016|ENST00000371959|AMOT	REV__ENSG00000126016|ENST00000371959|AMOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7645263671875	2	521.780682	1041.54681	-1.233	-0.00064336	2.7493	0.0014345	1.5163	0.00079117	522.2816883612429	35.514	0.69544	35.493	35.122	35.817	-0.021763					47	17	6	0	0	0	0.0242	1	2757	2757		60.118	22.959	1	389130	+		63741	22877	44897	44960	68963	68963					0.02769929971691454
QPRPPVPPKFA	11	Unmodified	_QPRPPVPPKFA_					0	0	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5632629394531	3	411.908269	1232.70298	0.014859	6.1206E-06	-2.4836	-0.001023	-2.4688	-0.0010169	411.9071190187806	32.595	0.41091	32.358	32.086	32.497	-0.23666					15	9	3	0	0	0	0.024739	1	2242	2242		42.338	10.704	1	262230	+		63742	25913	44898	44961	68964	68964					0.09593375422309691
QPRPQDSNL	9	Unmodified	_QPRPQDSNL_					0	0	0		nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7672119140625	2	527.767437	1053.52032	-1.9697	-0.0010396	1.4926	0.00078776	-0.47711	-0.0002518	527.768129650339	29.875	0.81425	29.875	29.57	30.384	0					51	19	4	0	0	0	0.1158	3	1873	1861;1873;1887		107.01	20.954	1	2550800			63743	8325	44899	44962	68965;68966;68967	68966					-0.004298037102898888
QPRPQDSNL	9	Unmodified	_QPRPQDSNL_					0	0	0		nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7671508789062	2	527.767437	1053.52032	-0.59878	-0.00031602	0.092405	4.8768E-05	-0.50637	-0.00026725	527.7673524887315	29.43	0.75896	29.508	29.165	29.924	0.078344					53	18	4	0	0	0	0.077175	2	1759	1748;1759		118.74	17.142	1	2679300			63744	8325	44899	44962	68968;68969	68969					-0.004298037102898888
QPRRLLPGP	9	Unmodified	_QPRRLLPGP_					0	0	0		nc|ENSG00000160323|Q76LX8|ADAMTS13	nc|ENSG00000160323|Q76LX8|ADAMTS13	nc|ENSG00000160323|Q76LX8|ADAMTS13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.3167114257812	2	517.3169	1032.61925	-1.0649	-0.00055089	0.8048	0.00041634	-0.2601	-0.00013455	517.3171595481413	29.409	0.81569	29.164	28.838	29.654	-0.24524					50	18	4	0	0	0	0.52323	1	1811	1811		57.811	7.7867	1	1660500			63745	18425	44900	44963	68970	68970					0.10424264045263953
QPRRPKSA	8	Unmodified	_QPRRPKSA_					0	0	0		ENST00000276431.8_1_8:22926459-22926618:-|nuORF	ENST00000276431.8_1_8:22926459-22926618:-|nuORF	ENST00000276431.8_1_8:22926459-22926618:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7381896972656	2	470.277775	938.540997	-0.051897	-2.4406E-05	4.451	0.0020932	4.3991	0.0020688	470.2785893861267	22.917	0.40812	22.917	22.757	23.165	0					12	8	2	0	0	0	0.027866	1	848	848		33.516	16.151	1	132890			63746	11694	44901	44964	68971	68971					0.0692683146003219
QPRRPKSA	8	Unmodified	_QPRRPKSA_					0	0	0		ENST00000276431.8_1_8:22926459-22926618:-|nuORF	ENST00000276431.8_1_8:22926459-22926618:-|nuORF	ENST00000276431.8_1_8:22926459-22926618:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	470.277775	938.540997	-0.026305	-1.2371E-05	1.755	0.00082534	1.7287	0.00081297	470.27865427824383	22.971	0.43714	22.91	22.753	23.19	-0.06086	-0.0036081	-0.0009668	NaN	33.516	13	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145600			63747	11694	44901	44964							0.0692683146003219
QPRRRLYWL	9	Unmodified	_QPRRRLYWL_					0	0	0		ENST00000333762.5_1_3:129033834-129033906:-|nuORF	ENST00000333762.5_1_3:129033834-129033906:-|nuORF	ENST00000333762.5_1_3:129033834-129033906:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.6986389160156	3	429.919279	1286.73601	-0.72409	-0.0003113	-0.45945	-0.00019753	-1.1835	-0.00050883	429.91913416524005	32.98	0.52841	32.98	32.827	33.356	0					30	13	3	0	0	0	0.024374	1	2347	2347		40.778	0	1	142590			63748	12370	44902	44965	68972	68972					0.10411002265050229
QPRRRLYWL	9	Unmodified	_QPRRRLYWL_					0	0	0		ENST00000333762.5_1_3:129033834-129033906:-|nuORF	ENST00000333762.5_1_3:129033834-129033906:-|nuORF	ENST00000333762.5_1_3:129033834-129033906:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.6985778808594	3	429.919279	1286.73601	-0.60455	-0.00025991	-0.33987	-0.00014612	-0.94442	-0.00040602	429.919057564894	32.858	0.69619	32.864	32.625	33.321	0.0066261					36	18	3	0	0	0	0.024374	1	2318	2318		32.812	0	1	180270			63749	12370	44902	44965	68973	68973					0.10411002265050229
QPRSPAQIL	9	Unmodified	_QPRSPAQIL_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-17|DMD;ENST00000481143.2_1_X:31116236-31187660:-|nuORF;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000198947|P11532-6|DMD	nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-15|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.2585144042969	2	505.293091	1008.57163	0.49364	0.00024943	-0.96371	-0.00048696	-0.47007	-0.00023752	505.29250429299384	40.948	0.608	40.825	40.547	41.155	-0.12318					39	16	3	0	0	0	0.024405	1	3659	3659		27.882	0	1	658350			63750	10259;18652	44903	44966	68974	68974					0.06768565054414921
QPRSPGLL	8	Unmodified	_QPRSPGLL_					0	0	0		ENST00000479971.1_1_12:72291642-72301148:+|nuORF	ENST00000479971.1_1_12:72291642-72301148:+|nuORF	ENST00000479971.1_1_12:72291642-72301148:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801513671875	2	434.255977	866.497401	-0.57238	-0.00024856	1.8884	0.00082004	1.316	0.00057148	434.2561832540893	39.222	0.14521	39.123	39.018	39.163	-0.098755					5	3	2	0	0	0	0.027866	1	3323	3323		19.36	3.7182	1	28828			63751	15184	44904	44967	68975	68975					0.05881221962908967
QPRTDPTL	8	Unmodified	_QPRTDPTL_					0	0	0			REV__ENST00000398988.7_2_17:25951918-25952683:+|nuORF	REV__ENST00000398988.7_2_17:25951918-25952683:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.28448486328125	2	464.248349	926.482145	-0.1489	-6.9126E-05	0.76356	0.00035448	0.61466	0.00028536	464.2485624395495	24.89	0.52487	24.715	24.383	24.907	-0.17484					25	11	3	0	0	0	0.027866	1	1090	1090		35.618	0	1	134690	+		63752	31817	44905	44968	68976	68976					0.015963103750550545
QPRVGRGP	8	Unmodified	_QPRVGRGP_					0	0	0			REV__ENST00000393409.2_1_3:126755324-126755609:+|nuORF	REV__ENST00000393409.2_1_3:126755324-126755609:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.7513732910156	2	433.751393	865.488233	0.50306	0.0002182	-0.21412	-9.2875E-05	0.28894	0.00012533	433.7512119293158	19.727	1.5901	19.727	18.972	20.562	0					82	32	4	0	0	0	0.88442	1	414	414		52.299	2.2746	1	1278400	+		63753	31644	44906	44969	68977	68977					0.05010873397236537
QPRWLENL	8	Unmodified	_QPRWLENL_					0	0	0			REV__ENST00000282488.11_1_3:151986727-151986862:+|nuORF	REV__ENST00000282488.11_1_3:151986727-151986862:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2841186523438	2	528.285266	1054.55598	-0.43274	-0.00022861	-1.3763	-0.00072709	-1.8091	-0.0009557	528.2845244630541	87.175	2.0473	87.175	85.956	88.003	0					100	48	4	0	0	0	0.74904	1	10991	10991		63.306	3.188	1	11263000	+		63754	29900	44907	44970	68978	68978					0.0308827853737057
QPRYPVNSV	9	Unmodified	_QPRYPVNSV_					0	0	0		ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2825317382812	2	530.282723	1058.55089	-0.33104	-0.00017555	-0.55929	-0.00029658	-0.89034	-0.00047213	530.2824904478331	39.751	1.0224	39.751	39.076	40.099	0					97	28	5	0	0	0	0.14024	3	3413	3413;3445;3457		101.6	22.15	1	34885000			63755	3814	44908	44971	68979;68980;68981	68979					0.023959746747550525
QPRYPVNSV	9	Unmodified	_QPRYPVNSV_					0	0	0		ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2822875976562	2	530.282723	1058.55089	-1.3324	-0.00070657	0.50181	0.0002661	-0.83063	-0.00044047	530.2830630883997	39.795	0.90594	39.682	39.15	40.055	-0.11222					94	24	5	0	0	0	0.26966	2	3445	3445;3471		79.713	3.0625	1	30176000			63756	3814	44908	44971	68982;68983	68982					0.023959746747550525
QPRYPVNSV	9	Unmodified	_QPRYPVNSV_					0	0	0		ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2825317382812	2	530.282723	1058.55089	-0.9302	-0.00049327	0.3213	0.00017038	-0.6089	-0.00032289	530.2829447798715	39.967	0.82627	39.99	39.561	40.387	0.023006					88	20	5	0	0	0	0.1158	4	3401	3390;3401;3412;3462		107.01	33.033	1	31256000			63757	3814	44908	44971	68984;68985;68986;68987	68985					0.023959746747550525
QPSANCQL	8	Unmodified	_QPSANCQL_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.698486328125	2	430.700177	859.385802	-0.58783	-0.00025318	-3.2183	-0.0013861	-3.8061	-0.0016393	430.69869432987184	32.912	0.76584	32.919	32.589	33.355	0.0066261					61	20	4	0	0	0	0.91239	1	2307	2307		50.025	0.58299	1	2943400	+		63758	27399	44909	44972	68988	68988					-0.049515804565544386
QPSAPGHSV	9	Unmodified	_QPSAPGHSV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	440.21990966796875	2	440.219591	878.42463	-0.11251	-4.9528E-05	0.43007	0.00018933	0.31756	0.0001398	440.21964579550405	26.254	1.4105	26.254	25.912	27.323	0					99	34	4	0	0	0	0.25032	4	1314	1314;1325;1338;1353		82.305	25.344	1	2455400			63759	9533	44910	44973	68989;68990;68991;68992	68989					-0.01944531830520191
QPSAPGHSV	9	Unmodified	_QPSAPGHSV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.2198486328125	2	440.219591	878.42463	-0.26969	-0.00011872	0.63303	0.00027867	0.36334	0.00015995	440.2197337612727	26.284	1.322	26.261	25.909	27.231	-0.023088					96	32	4	0	0	0	0.25032	1	1303	1303		82.305	21.333	1	2884000			63760	9533	44910	44973	68993	68993					-0.01944531830520191
QPSAPGHSV	9	Unmodified	_QPSAPGHSV_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.21966552734375	2	440.219591	878.42463	0.29139	0.00012827	0.042228	1.859E-05	0.33362	0.00014686	440.2194844822438	25.947	1.3983	26.027	25.664	27.062	0.08009					98	33	4	0	0	0	0.4752	2	1250	1222;1250		60.972	22.166	1	2820800			63761	9533	44910	44973	68994;68995	68995					-0.01944531830520191
QPSILPDGSI	10	Unmodified	_QPSILPDGSI_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3038940429688	2	513.776939	1025.53933	-1.4946	-0.00076791	-0.277	-0.00014232	-1.7716	-0.00091023	513.7764314695044	29.962	0.52594	29.962	29.732	30.258	0					26	12	3	0	0	0	0.03519	1	1867	1867		35.618	0	1	161630			63762	3883	44911	44974	68996	68996					0.027577328607549134
QPSLCWIIIK	10	Unmodified	_QPSLCWIIIK_					0	0	0			REV__ENST00000454652.6_1_3:183397159-183397345:+|nuORF	REV__ENST00000454652.6_1_3:183397159-183397345:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	600.8248291015625	2	600.844102	1199.67365	-0.5697	-0.0003423	1.7903	0.0010757	1.2206	0.00073341	600.8449451557012	55.009	0.57065	54.778	54.494	55.065	-0.23087					37	15	3	0	0	0	0.03519	1	5883	5883		13.454	10.044	1	766570	+		63763	32764	44912	44975	68997	68997					0.08180095081820582
QPSLKDLW	8	Unmodified	_QPSLKDLW_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2;REV__ENSG00000120318|ENST00000239440|ARAP3	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.78515625	2	493.768917	985.523281	-0.5236	-0.00025854	-2.3731	-0.0011718	-2.8967	-0.0014303	493.7673250644796	25.992	0.4307	25.969	25.693	26.124	-0.023088					17	9	3	0	0	0	0.027866	1	1244	1244		85.359	14.064	1	73937	+		63764	20124;22523	44913	44976	68998	68998					0.029940714145027414
QPSLKDLW	8	Unmodified	_QPSLKDLW_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2;REV__ENSG00000120318|ENST00000239440|ARAP3	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7854309082031	2	493.768917	985.523281	-1.1211	-0.00055355	-2.9589	-0.001461	-4.08	-0.0020146	493.76735168899125	24.873	1.2289	24.838	24.41	25.639	-0.034395					69	28	4	0	0	0	0.027866	1	1197	1197		73.975	7.5455	1	1043800	+		63765	20124;22523	44913	44976	68999	68999					0.029940714145027414
QPSLLMMQ	8	Oxidation (M)	_QPSLLM(Oxidation (M))MQ_		QPSLLM(0.5)M(0.5)Q		QPSLLM(0)M(0)Q	0	0	1			REV__ENST00000371224.6_1_10:97393249-97393321:-|nuORF	REV__ENST00000371224.6_1_10:97393249-97393321:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.2368469238281	2	482.235538	962.456524	0.23089	0.00011134	3.1696	0.0015285	3.4005	0.0016398	482.23693779076655	69.785	1.0238	69.563	69.103	70.127	-0.22246					58	24	4	0	0	0	0.76379	1	8100	8100		62.107	9.8082	2	1999600	+		63766	31153	44914	44977	69000	69000		877;878			-0.026206234632354608
QPSQAWPI	8	Unmodified	_QPSQAWPI_					0	0	0		ENST00000373610.7_1_1:32660814-32660901:+|nuORF	ENST00000373610.7_1_1:32660814-32660901:+|nuORF	ENST00000373610.7_1_1:32660814-32660901:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7379150390625	2	463.74016	925.465767	-0.34751	-0.00016116	-4.0958	-0.0018994	-4.4433	-0.0020605	463.73814937327666	32.031	1.151	32.043	31.742	32.893	0.011799					53	29	2	0	0	0	0.52467	1	2171	2171		83.287	0	1	1894300			63767	13081	44915	44978	69001	69001					5.229208954915521E-05
QPSSMKLHAQ	10	Unmodified	_QPSSMKLHAQ_					0	0	0			REV__ENSG00000161021|ENST00000292599|MAML1	REV__ENSG00000161021|ENST00000292599|MAML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2775268554688	2	563.787315	1125.56008	-1.0629	-0.00059923	0.76965	0.00043392	-0.29321	-0.00016531	563.787572741206	90.508	0.74368	90.353	90.022	90.766	-0.1552					32	17	4	0	0	0	0.03519	1	11129	11129		30.318	13.6	1	599610	+		63768	25370	44916	44979	69002	69002					0.0023199996876428486
QPSSYFPS	8	Unmodified	_QPSSYFPS_					0	0	0			REV__ENSG00000242732|ENST00000609883|RTL5	REV__ENSG00000242732|ENST00000609883|RTL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.708525	911.402498	-0.32479	-0.00014833	3.3031	0.0015086	2.9783	0.0013602	456.70979637931185	23.282	0.41825	23.221	22.889	23.308	-0.060862					15	9	2	0	0	0	0.027866	1	865	865		71.296	7.0884	1	21780	+		63769	28981	44917	44980	69003	69003					-0.05674756298947159
QPSVFGSQVW	10	Unmodified	_QPSVFGSQVW_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENST00000532776.5_1_11:65429156-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	567.7831420898438	2	567.782556	1133.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.642	1	17.5	17	18	-0.14278								0	0	0	0.74335	1	182	182		39.253	1.4413	1				63770	16261	44918	44981	69004	69004					-0.010874450450728546
QPSWFISTGA	10	Unmodified	_QPSWFISTGA_					0	0	0		ENST00000248076.3_1_19:16999672-16999966:+|nuORF	ENST00000248076.3_1_19:16999672-16999966:+|nuORF	ENST00000248076.3_1_19:16999672-16999966:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.8193359375	2	547.269281	1092.52401	-1.5601	-0.00085382	-2.2362	-0.0012238	-3.7963	-0.0020776	547.2679270814097	44.039	0.77831	43.895	43.353	44.131	-0.14471					43	21	3	0	0	0	0.03519	1	4184	4184		19.997	0	1	791340			63771	11332	44919	44982	69005	69005					-0.018551339364194064
QPSWFISTGA	10	Unmodified	_QPSWFISTGA_					0	0	0		ENST00000248076.3_1_19:16999672-16999966:+|nuORF	ENST00000248076.3_1_19:16999672-16999966:+|nuORF	ENST00000248076.3_1_19:16999672-16999966:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	547.269281	1092.52401	-0.57212	-0.0003131	-0.77594	-0.00042465	-1.3481	-0.00073775	547.2689333316661	43.532	0.54515	43.563	43.267	43.812	0.030827	-0.20734	0.0012748	NaN	14.137	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171370			63772	11332	44919	44982							-0.018551339364194064
QPSWTIEEY	9	Unmodified	_QPSWTIEEY_					0	0	0		ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2821655273438	2	576.764029	1151.5135	0.46739	0.00026957	-2.8344	-0.0016348	-2.367	-0.0013652	577.2634603047308	51.054	0.18684	50.873	50.797	50.984	-0.18071					5	4	2	0	0	0	0.024457	1	5227	5227		29.15	0	1	50000			63773	7929	44920	44983	69006	69006					-0.05619161381491722
QPTGGKARL	9	Unmodified	_QPTGGKARL_					0	0	0		ENST00000559763.1_1_15:63418217-63447889:-|nuORF;ENST00000402023.1_1_6:74328227-74328317:+|nuORF;ENSG00000185088|ENST00000330964|RPS27L;ENSG00000177954|ENST00000651669|RPS27;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.27239990234375	2	464.272158	926.529764	-1.1135	-0.00051699	0.60649	0.00028157	-0.50706	-0.00023541	464.27232595318674	20.396	1.3141	20.396	20.028	21.342	0					60	26	4	0	0	0	0.62163	3	519	519;530;541		51.335	5.5774	1	614110			63774	8778	44921	44984	69007;69008;69009	69007					0.06356009365879345
QPTGGKARL	9	Unmodified	_QPTGGKARL_					0	0	0		ENST00000559763.1_1_15:63418217-63447889:-|nuORF;ENST00000402023.1_1_6:74328227-74328317:+|nuORF;ENSG00000185088|ENST00000330964|RPS27L;ENSG00000177954|ENST00000651669|RPS27;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.272158	926.529764	1.7443	0.00080985	-1.3818	-0.00064151	0.36259	0.00016834	464.2713328032755	20.42	0.49217	20.489	20.316	20.808	0.068901	0.027024	-0.0011842	NaN	51.335	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59244			63775	8778	44921	44984							0.06356009365879345
QPTKPSTAE	9	Unmodified	_QPTKPSTAE_					0	0	0		BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7308349609375	2	479.745639	957.476725	-0.38106	-0.00018281	-2.6295	-0.0012615	-3.0106	-0.0014443	479.74645280474846	31.075	0.21161	31.075	30.961	31.173	0					6	4	2	0	0	0	0.023454	1	2058	2058		52.937	5.2794	1	26019			63776	194	44922	44985	69010	69010					-0.00371413207437854
QPTKSLLAI	9	Unmodified	_QPTKSLLAI_					0	0	0			REV__ENST00000413330.5_1_10:92645653-92654595:+|nuORF	REV__ENST00000413330.5_1_10:92645653-92654595:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.76983642578125	2	485.800217	969.585882	-0.93042	-0.000452	0.42266	0.00020533	-0.50776	-0.00024667	485.8001927735554	35.511	0.71692	35.511	35.093	35.81	0					32	18	2	0	0	0	0.02435	1	2733	2733		34.173	5.0025	1	472100	+		63777	32020	44923	44986	69011	69011					0.09987217482705546
QPTKSLLAI	9	Unmodified	_QPTKSLLAI_					0	0	0			REV__ENST00000413330.5_1_10:92645653-92654595:+|nuORF	REV__ENST00000413330.5_1_10:92645653-92654595:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.800217	969.585882	-1.1038	-0.0005362	0.5412	0.00026291	-0.56256	-0.00027329	485.80035765147915	35.299	0.57607	35.277	35.013	35.589	-0.021763	-0.14445	0.00018563	NaN	34.173	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392080	+		63778	32020	44923	44986							0.09987217482705546
QPTPIKSPK	9	Unmodified	_QPTPIKSPK_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.77215576171875	2	498.297842	994.581131	-0.29395	-0.00014647	-0.56708	-0.00028258	-0.86103	-0.00042905	498.29744120070177	24.611	0.4157	24.396	24.177	24.592	-0.2151					16	9	2	0	0	0	0.024511	1	1093	1093		13.454	0	1	214220	+		63779	24805	44924	44987	69012	69012					0.08362333339948691
QPTPLVWK	8	Unmodified	_QPTPLVWK_					0	0	0		ENST00000609041.1_1_20:60581499-60581991:-|nuORF	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2871398925781	2	484.781828	967.549102	-0.51182	-0.00024812	-3.6558	-0.0017723	-4.1677	-0.0020204	484.779805817972	23.786	1.2198	23.786	23.165	24.385	0					55	28	2	0	0	0	0.027866	1	891	891		19.997	8.3608	1	415900			63780	17600	44925	44988	69013	69013					0.06402965656798187
QPTQILNTSNK	11	Unmodified	_QPTQILNTSNK_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3360595703125	2	622.335684	1242.65681	0.63113	0.00039278	0.72094	0.00044866	1.3521	0.00084144	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.0624	1	13536	13536		21.686	2.3258	1	1535400	+		63781	20254	44926	44989	69014	69014					0.04519265729572908
QPTRLIRSI	9	Unmodified	_QPTRLIRSI_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7592163085938	2	542.33529	1082.65603	-1.148	-0.00062257	0.71242	0.00038637	-0.43553	-0.0002362	542.3355241971403	41.58	0.64739	41.35	41.041	41.688	-0.2303					36	16	3	0	0	0	0.024457	1	3641	3641		21.96	4.5949	1	910480	+		63782	19687	44927	44990	69015	69015					0.1180051587118669
QPTRNLAAF	9	Unmodified	_QPTRNLAAF_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;MINK1|p.R855Pfs*39|1|0.2|ENSG00000141503|chr17:4893589-4893590|-/G|frameshift_variant	nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000141503|Q8N4C8-5|MINK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.279541015625	2	509.277441	1016.54033	-0.57041	-0.0002905	-0.1011	-5.149E-05	-0.67152	-0.00034199	509.27752290278903	35.432	2.1234	35.22	34.806	36.93	-0.21246					149	55	7	0	0	0	0.85329	1	2668	2668		35.618	0	1	8310200			63783	5499	44928	44991	69016	69016					0.03271992020313519
QPTSLLAGT	9	Unmodified	_QPTSLLAGT_					0	0	0			REV__ENSG00000169957|ENST00000380412|ZNF768	REV__ENSG00000169957|ENST00000380412|ZNF768	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.2453308105469	2	444.245275	886.475997	0.49711	0.00022084	-0.2112	-9.3827E-05	0.2859	0.00012701	444.2453203047101	103.02	1.0446	102.85	102.55	103.59	-0.17034					50	25	5	0	0	0	0.80003	1	12785	12785		39.253	0	1	10788000	+		63784	26421	44929	44992	69017	69017					0.028217921435157223
QPTSRLVKP	9	Unmodified	_QPTSRLVKP_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3038330078125	2	513.308741	1024.60293	-0.63746	-0.00032721	1.9374	0.0009945	1.3	0.00066729	513.8118328467677	29.962	0.68906	29.971	29.474	30.164	0.0086708					20	16	2	0	0	0	0.024319	1	1833	1833		31.53	0	1	119300			63785	10426	44930	44993	69018	69018					0.09161138088529697
QPTSTVSVTE	10	Unmodified	_QPTSTVSVTE_					0	0	0		ENSG00000109943|ENST00000227348|CRTAM;nc|ENSG00000109943|O95727-2|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7435302734375	2	524.761486	1047.50842	-0.2782	-0.00014599	1.0848	0.00056926	0.8066	0.00042327	524.7614852802446	39.883	0.38444	39.653	39.507	39.891	-0.23021					16	9	2	0	0	0	0.03519	1	3424	3424		26.693	0	1	140940			63786	3006	44931	44994	69019	69019					-0.013434652441446815
QPTTLELANKP	11	Unmodified	_QPTTLELANKP_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5111999511719	3	404.559194	1210.65575	1.1348	0.00045908	1.6246	0.00065725	2.7594	0.0011163	404.55988860395115	32.288	0.561	32.095	31.856	32.417	-0.19261					19	12	2	0	0	0	0.024776	1	2181	2181		67.214	14.201	1	118590			63787	3684	44932	44995	69020	69020					0.058850513606330423
QPTVMNQMG	9	Oxidation (M)	_QPTVMNQM(Oxidation (M))G_		QPTVM(0.009)NQM(0.991)G		QPTVM(-21)NQM(21)G	0	0	1		ENST00000341071.11_1_1:32844359-32849444:-|nuORF	ENST00000341071.11_1_1:32844359-32849444:-|nuORF	ENST00000341071.11_1_1:32844359-32849444:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2259216308594	2	511.225702	1020.43685	1.209	0.00061807	-1.426	-0.00072903	-0.21705	-0.00011096	511.2248206693708	25.003	0.56281	24.832	24.513	25.076	-0.17151					30	12	3	0	0	0	0.56934	1	1111	1111		54.776	8.8041	2	351610			63788	12482	44933	44996	69021	69021		474			-0.07254999473991575
QPTVMNQMG	9	Oxidation (M)	_QPTVMNQM(Oxidation (M))G_					0	0	1		ENST00000341071.11_1_1:32844359-32849444:-|nuORF	ENST00000341071.11_1_1:32844359-32849444:-|nuORF	ENST00000341071.11_1_1:32844359-32849444:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.225702	1020.43685	-0.50006	-0.00025565	0.17491	8.9418E-05	-0.32515	-0.00016623	511.22569402611197	25.18	0.60806	24.953	24.623	25.231	-0.22683	0.083794	0.00057811	NaN	54.776	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193370			63789	12482	44933	44996				474			-0.07254999473991575
QPTVMNQMG	9	Oxidation (M)	_QPTVMNQM(Oxidation (M))G_					0	0	1		ENST00000341071.11_1_1:32844359-32849444:-|nuORF	ENST00000341071.11_1_1:32844359-32849444:-|nuORF	ENST00000341071.11_1_1:32844359-32849444:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.225702	1020.43685	-0.31208	-0.00015955	0.48149	0.00024615	0.16941	8.6606E-05	511.22568445972615	24.998	0.65021	24.823	24.468	25.118	-0.17484	-0.046229	0.00089157	NaN	54.776	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247810			63790	12482	44933	44996				474			-0.07254999473991575
QPTVRECIS	9	Unmodified	_QPTVRECIS_					0	0	0			REV__ENST00000441188.2_1_X:92478653-92479352:-|nuORF	REV__ENST00000441188.2_1_X:92478653-92479352:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2929077148438	2	516.760766	1031.50698	-0.62583	-0.00032341	-2.2937	-0.0011853	-2.9196	-0.0015087	516.7593834254806	31.89	0.35934	31.89	31.71	32.07	0					14	8	2	0	0	0	0.024313	1	2189	2189		51.193	0	1	658600	+		63791	32539	44934	44997	69022	69022					-0.007513778138900307
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8057861328125	2	528.806031	1055.59751	-0.24808	-0.00013119	-0.060351	-3.1914E-05	-0.30843	-0.0001631	528.8059932027593	54.264	0.82642	54.117	53.784	54.611	-0.14724					62	23	4	0	0	0	0.67244	1	5889	5889		47.96	0.043923	1	4485100			63792	2451	44935	44998	69023	69023					0.07193414506014051
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8060913085938	2	528.806031	1055.59751	0.24805	0.00013117	-0.60591	-0.00032041	-0.35786	-0.00018924	528.8056695054519	53.932	0.78638	54.03	53.739	54.525	0.098015					58	22	4	0	0	0	0.26966	1	5789	5789		79.713	18.741	1	5026600			63793	2451	44935	44998	69024	69024					0.07193414506014051
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.806031	1055.59751	0.22978	0.00012151	0.27524	0.00014555	0.50501	0.00026705	528.8066689717155	54.253	0.31673	54.055	53.889	54.206	-0.19739	-0.035744	0.00029937	NaN	79.713	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160380			63794	2451	44935	44998							0.07193414506014051
QPVAISSAPAF	11	Unmodified	_QPVAISSAPAF_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;ITSN1|p.P715Sfs*27|1|0.06|ENSG00000205726|chr21:33797568-33797569|-/AG|frameshift_variant	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2821655273438	2	544.292756	1086.57096	0.083569	4.5486E-05	2.9832	0.0016237	3.0668	0.0016692	544.294281539105	50.883	0.7058	50.607	50.299	51.004	-0.27643					31	18	2	0	0	0	0.024747	1	5241	5241		24.519	3.5723	1	1235100			63795	10440	44936	44999	69025	69025					0.031137256146848813
QPVAPPPPS	9	Unmodified	_QPVAPPPPS_					0	0	0			REV__ENSG00000167617|ENST00000301200|CDC42EP5	REV__ENSG00000167617|ENST00000301200|CDC42EP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.2323913574219	2	445.242535	888.470518	-1.3683	-0.00060921	0.63836	0.00028423	-0.72991	-0.00032499	445.24218644572227	37.978	0.39622	37.978	37.803	38.199	0					15	11	2	0	0	0	0.02435	1	3116	3116		26.693	7.3329	1	124960	+		63796	26166	44937	45000	69026	69026					0.02182113351705084
QPVGIAPQ	8	Unmodified	_QPVGIAPQ_					0	0	0		ENST00000308025.7_1_12:49223885-49224209:-|nuORF	ENST00000308025.7_1_12:49223885-49224209:-|nuORF	ENST00000308025.7_1_12:49223885-49224209:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	2	405.229428	808.444303	-0.4169	-0.00016894	0.92824	0.00037615	0.51134	0.00020721	405.2303382526977	27.344	0.32973	27.187	27.061	27.391	-0.15664					10	7	2	0	0	0	0.027866	1	1470	1470		18.324	6.8134	1	46394			63797	12020	44938	45001	69027	69027					0.032418441802292364
QPVHPKPLS	9	Unmodified	_QPVHPKPLS_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7876281738281	2	501.790184	1001.56581	-0.52095	-0.00026141	-4.0731	-0.0020438	-4.5941	-0.0023053	501.7881799055232	32.187	0.76791	32.198	31.863	32.63	0.011799					50	19	4	0	0	0	0.39228	1	2204	2204		66.429	4.3219	1	3358600			63798	1141	44939	45002	69028	69028					0.06509466542752307
QPVKIPQPPT	10	Unmodified	_QPVKIPQPPT_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.2249755859375	2	552.824224	1103.63389	-0.47281	-0.00026138	3.2177	0.0017788	2.7449	0.0015175	552.82584255404	31.108	0.48594	30.923	30.576	31.062	-0.18503					18	11	2	0	0	0	0.03519	1	1989	1989		20.947	4.4738	1	244410	+		63799	23535	44940	45003	69029	69029					0.08622291402753035
QPVKVVKIL	9	Unmodified	_QPVKVVKIL_					0	0	0			REV__nc|ENSG00000127804|Q86W50-2|METTL16	REV__nc|ENSG00000127804|Q86W50-2|METTL16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2688598632812	2	512.349877	1022.6852	-0.34997	-0.00017931	-0.12799	-6.5575E-05	-0.47796	-0.00024488	512.3496585921292	78.948	0.90657	78.967	78.693	79.6	0.018677					48	21	3	0	0	0	0.024523	1	9796	9796		29.15	8.2026	1	524270	+		63800	22948	44941	45004	69030	69030					0.1747666016748326
QPVLRRHG	8	Unmodified	_QPVLRRHG_					0	0	0		nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT	nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2849426269531	2	481.785767	961.556982	0.51312	0.00024722	2.018	0.00097222	2.5311	0.0012194	481.78641870954823	54.276	0.64984	54.079	53.827	54.477	-0.19739					23	17	2	0	0	0	0.027866	1	5783	5783		40.573	16.37	1	411480			63801	18457	44942	45005	69031	69031					0.07466537696939213
QPVPLSALL	9	Unmodified	_QPVPLSALL_					0	0	0		ENST00000354670.8_1_15:40382930-40383443:-|nuORF	ENST00000354670.8_1_15:40382930-40383443:-|nuORF	ENST00000354670.8_1_15:40382930-40383443:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.2893371582031	2	469.289485	936.564418	0.12816	6.0143E-05	0.087548	4.1085E-05	0.2157	0.00010123	469.2894053436356	78.98	0.79144	78.793	78.469	79.26	-0.18739					47	18	4	0	0	0	0.62163	1	9763	9763		51.335	0	1	798770			63802	12630	44943	45006	69032	69032					0.09359832453992567
QPVPVKKY	8	Unmodified	_QPVPVKKY_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.78607177734375	2	479.789653	957.564752	-1.1138	-0.00053437	-4.1098	-0.0019718	-5.2235	-0.0025062	479.78740465299296	22.219	0.48206	22.293	22.125	22.607	0.073954					33	9	5	0	0	0	0.99042	1	738	738		38.806	6.8513	1	1215700			63803	6183	44944	45007	69033	69033					0.0842725217385123
QPVQALGE	8	Unmodified	_QPVQALGE_					0	0	0			REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72	REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2279052734375	2	421.224342	840.434132	0.40579	0.00017093	1.9964	0.00084092	2.4022	0.0010119	421.2253519375158	25.752	0.21461	25.832	25.664	25.879	0.08009					6	4	2	0	0	0	0.027866	1	1177	1177		25.45	0	1	31026	+		63804	27095	44945	45008	69034	69034					0.0075323645500020575
QPWHTSLL	8	Unmodified	_QPWHTSLL_					0	0	0			REV__ENST00000396193.5_2_7:31792856-31792955:-|nuORF	REV__ENST00000396193.5_2_7:31792856-31792955:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.8034973144531	2	491.261259	980.507966	-0.72713	-0.00035721	-3.3896	-0.0016652	-4.1167	-0.0020224	491.25929586583595	35.694	0.39453	35.694	35.492	35.886	0					12	9	2	0	0	0	0.027866	1	2739	2739		50.025	14.406	1	259980	+		63805	31726	44946	45009	69035	69035					0.016932046173451454
QPWTQTLQLK	10	Unmodified	_QPWTQTLQLK_					0	0	0		ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.8983459472656	3	414.89955	1241.67682	0.31977	0.00013267	-3.4257	-0.0014213	-3.1059	-0.0012886	414.89822568759973	25.073	1.2709	25.154	24.779	26.049	0.08009					99	29	6	0	0	0	0.96822	1	1102	1102		49.536	0.93449	1	11103000			63806	6696	44947	45010	69036	69036					0.06565061460173638
QPYAAQQSL	9	Unmodified	_QPYAAQQSL_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.76629638671875	2	503.253631	1004.49271	0.45497	0.00022896	0.025339	1.2752E-05	0.48031	0.00024172	503.2541338554241	58.732	0.65958	58.545	58.311	58.971	-0.18705					22	17	2	0	0	0	0.024381	1	6622	6622		37.159	0	1	649860	+		63807	22372	44948	45011	69037	69037					-0.009357069705288268
QPYLIFQEP	9	Unmodified	_QPYLIFQEP_					0	0	0			REV__ENST00000417037.6_2_3:38184065-38184197:+|nuORF	REV__ENST00000417037.6_2_3:38184065-38184197:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.811279296875	2	567.795132	1133.57571	-0.30863	-0.00017524	-0.69172	-0.00039276	-1.0004	-0.000568	567.7947558310252	55.721	1.009	55.565	55.093	56.102	-0.15601					44	27	2	0	0	0	0.024294	1	6230	6230		29.15	11.785	1	119710	+		63808	32089	44949	45012	69038	69038					0.01426609757481856
QPYLLLPE	8	Unmodified	_QPYLLLPE_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7739562988281	2	486.773668	971.532783	-0.56873	-0.00027684	1.0823	0.00052682	0.51354	0.00024998	486.7740348135433	27.292	0.87795	27.124	26.851	27.729	-0.16816					49	20	3	0	0	0	0.78609	1	1489	1489		60.294	7.9948	1	1281900			63809	3245	44950	45013	69039	69039					0.045878397000592486
QPYLRSKSL	9	Unmodified	_QPYLRSKSL_					0	0	0			REV__nc|ENSG00000172733|Q9UJV8-2|PURG	REV__nc|ENSG00000172733|Q9UJV8-2|PURG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.3134765625	2	546.314023	1090.61349	-1.822	-0.0009954	1.6861	0.00092113	-0.13595	-7.4269E-05	546.3146551241101	44.43	0.77335	44.285	43.994	44.767	-0.14471					49	22	3	0	0	0	0.28753	1	4223	4223		77.318	3.0625	1	3731500	+		63810	26702	44951	45014	69040	69040					0.07181120742961866
QPYPIPLSF	9	Unmodified	_QPYPIPLSF_					0	0	0			REV__ENST00000562567.6_1_16:68267161-68268061:-|nuORF	REV__ENST00000562567.6_1_16:68267161-68268061:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2894897460938	2	531.286943	1060.55933	-1.2638	-0.00067146	-2.3842	-0.0012667	-3.648	-0.0019381	531.7884450609968	25.17	0.41117	25.17	24.874	25.285	0					14	9	2	0	0	0	0.024487	1	1155	1155		17.365	0	1	54800	+		63811	35199	44952	45015	69041	69041					0.031475285913757034
QPYQLKTAM	9	Unmodified	_QPYQLKTAM_					0	0	0		nc|ENSG00000166317|Q9H987-2|SYNPO2L;ENSG00000166317|ENST00000394810|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.233642578125	2	540.281334	1078.54812	-0.68714	-0.00037125	1.2191	0.00065866	0.53197	0.00028741	540.2817010787056	26.846	0.41954	26.846	26.573	26.993	0					15	9	2	0	0	0	0.024205	1	1385	1385		63.306	15.649	1	98564			63812	7540	44953	45016	69042	69042					0.011983832255964444
QPYSRFLL	8	Unmodified	_QPYSRFLL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENST00000463516.5_1_7:45006053-45008547:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.8342590332031	2	512.284734	1022.55492	-0.31949	-0.00016367	-2.6963	-0.0013813	-3.0158	-0.0015449	512.2826128728387	73.102	0.75362	73.112	72.611	73.365	0.0096512					28	18	2	0	0	0	0.027866	1	8804	8804		29.15	10.046	1	94372			63813	5007	44954	45017	69043	69043					0.044540641684761795
QQAAIPIQI	9	Unmodified	_QQAAIPIQI_					0	0	0		nc|ENSG00000204463|P46379|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;ENSG00000204463|ENST00000676615|BAG6;BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENST00000469182.1_1_6:31610750-31613330:-|nuORF	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2904052734375	2	491.290017	980.565481	0.82396	0.0004048	-0.82893	-0.00040724	-0.0049667	-2.4401E-06	491.2895083322687	73.743	1.2398	73.743	73.477	74.717	0					53	29	3	0	0	0	0.43973	1	9010	9010		63.306	2.3343	1	5601200			63814	18661	44955	45018	69044	69044					0.07442046822893644
QQAAIPIQI	9	Unmodified	_QQAAIPIQI_					0	0	0		nc|ENSG00000204463|P46379|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;ENSG00000204463|ENST00000676615|BAG6;BAG6|p.M602Ifs*3|1|0.37|ENSG00000204463|chr6:31642976-31642977|-/A|frameshift_variant;ENST00000469182.1_1_6:31610750-31613330:-|nuORF	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2889099121094	2	491.290017	980.565481	0.040001	1.9652E-05	-0.036095	-1.7733E-05	0.0039053	1.9186E-06	491.289864404351	74.051	1.1911	73.78	73.499	74.69	-0.27126					57	28	3	0	0	0	0.25032	1	9017	9017		82.305	16.408	1	5858600			63815	18661	44955	45018	69045	69045					0.07442046822893644
QQAENNHVLK	10	Unmodified	_QQAENNHVLK_					0	0	0			REV__ENSG00000204815|ENST00000377540|ODAD4	REV__ENSG00000204815|ENST00000377540|ODAD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.80908203125	2	590.807094	1179.59963	-0.53834	-0.00031806	3.619	0.0021381	3.0806	0.0018201	590.809136025003	59.001	1.5765	59.001	58.679	60.256	0					108	42	5	0	0	0	0.62431	1	6735	6735		74.255	2.9593	1	5641400	+		63816	28636	44956	45019	69046	69046					0.017018432438362652
QQAENNHVLK	10	Unmodified	_QQAENNHVLK_					0	0	0			REV__ENSG00000204815|ENST00000377540|ODAD4	REV__ENSG00000204815|ENST00000377540|ODAD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.8096313476562	2	590.807094	1179.59963	-0.16895	-9.9814E-05	3.2846	0.0019406	3.1157	0.0018408	590.808999546907	59.322	1.7232	59.073	58.576	60.3	-0.24842					96	43	4	0	0	0	0.64538	1	6527	6527		71.877	0	1	9601600	+		63817	28636	44956	45019	69047	69047					0.017018432438362652
QQAHDLLIN	9	Unmodified	_QQAHDLLIN_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2780151367188	2	526.28018	1050.54581	-0.40617	-0.00021376	-1.4151	-0.00074472	-1.8212	-0.00095848	526.2786926271639	88.048	1.5286	88.048	87.532	89.061	0					89	36	4	0	0	0	0.28753	1	11106	11106		77.318	3.0625	1	443780			63818	8408	44957	45020	69048	69048					0.022556708121555857
QQAHDLLIN	9	Unmodified	_QQAHDLLIN_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.28018	1050.54581	0.24513	0.00012901	-2.0182	-0.0010621	-1.7731	-0.00093314	526.2784199117214	88.025	1.6156	87.998	87.37	88.986	-0.027664	0.042746	0.00046872	NaN	77.318	94	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544390			63819	8408	44957	45020							0.022556708121555857
QQAHDLLIN	9	Unmodified	_QQAHDLLIN_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.28018	1050.54581	0.8535	0.00044918	-2.5808	-0.0013582	-1.7273	-0.00090904	526.2779666183841	88.022	1.4101	88.04	87.431	88.841	0.018555	0.085411	-0.00012344	NaN	77.318	103	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550010			63820	8408	44957	45020							0.022556708121555857
QQAHDLLIN	9	Unmodified	_QQAHDLLIN_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.28018	1050.54581	-0.44857	-0.00023607	-2.2367	-0.0011771	-2.6853	-0.0014132	526.2780728745174	88.092	1.1758	87.922	87.162	88.338	-0.17053	-0.033263	0.00023875	NaN	77.318	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147560			63821	8408	44957	45020							0.022556708121555857
QQAHDLLIN	9	Unmodified	_QQAHDLLIN_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.28018	1050.54581	0.20307	0.00010687	-4.4866	-0.0023612	-4.2835	-0.0022543	526.277604435097	87.966	1.0554	87.83	87.051	88.107	-0.13613	-0.12512	-0.0021294	NaN	77.318	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124520			63822	8408	44957	45020							0.022556708121555857
QQAHDLLIN	9	Unmodified	_QQAHDLLIN_					0	0	0		ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000173757|ENST00000293328|STAT5B	ENSG00000173757|ENST00000293328|STAT5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.28018	1050.54581	0.118	6.2102E-05	-2.667	-0.0014036	-2.549	-0.0013415	526.2785567826675	88.03	0.77071	87.892	87.545	88.315	-0.13743	-0.062692	-0.00021416	NaN	77.318	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139760			63823	8408	44957	45020							0.022556708121555857
QQAKVQIL	8	Unmodified	_QQAKVQIL_					0	0	0		ENST00000491834.5_1_3:3197887-3221343:-|nuORF;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000482844.5_1_3:3196419-3214524:-|nuORF	ENST00000491834.5_1_3:3197887-3221343:-|nuORF	ENST00000491834.5_1_3:3197887-3221343:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.26788330078125	2	464.284734	926.554916	0.65795	0.00030548	-0.77187	-0.00035837	-0.11391	-5.2889E-05	464.2844923560294	58.221	1.3809	58.312	57.759	59.14	0.091217					96	37	4	0	0	0	0.027866	1	6562	6562		33.516	0	1	13684000			63824	3331	44958	45021	69049	69049					0.0887006416847953
QQCLWHGGE	9	Unmodified	_QQCLWHGGE_					0	0	0		ENST00000608013.1_1_2:96196226-96196520:+|nuORF	ENST00000608013.1_1_2:96196226-96196520:+|nuORF	ENST00000608013.1_1_2:96196226-96196520:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3055419921875	2	529.229633	1056.44471	-0.44753	-0.00023685	-1.7035	-0.00090154	-2.151	-0.0011384	529.2287302797714	64.347	0.35912	64.119	63.825	64.184	-0.22773					10	8	2	0	0	0	0.024457	1	7291	7291		37.159	17.162	1	53947			63825	17586	44959	45022	69050	69050					-0.08125104162218122
QQDLQDPDL	9	Unmodified	_QQDLQDPDL_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3055419921875	2	536.251286	1070.48802	-0.97038	-0.00052037	-0.74005	-0.00039685	-1.7104	-0.00091722	536.2508615401422	48.454	1.123	48.301	48.023	49.146	-0.15301					82	31	4	0	0	0	0.024447	1	4897	4897		40.778	0	1	795560	+		63826	22456	44960	45023	69051	69051					-0.04440635903961265
QQDQVDRNI	9	Unmodified	_QQDQVDRNI_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.2754516601562	2	558.275626	1114.5367	-0.40661	-0.000227	-0.13352	-7.4541E-05	-0.54013	-0.00030154	558.2754717316861	31.769	0.6797	31.769	31.469	32.149	0					63	16	6	0	0	0	0.03666	2	2144	2144;2157		136.27	54.028	1	2040600			63827	5939	44961	45024	69052;69053	69052					-0.01598722544190423
QQDQVDRNI	9	Unmodified	_QQDQVDRNI_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.275390625	2	558.275626	1114.5367	-0.54844	-0.00030618	0.053228	2.9716E-05	-0.49522	-0.00027647	558.2756356431931	31.632	0.68154	31.644	31.382	32.063	0.011797					55	16	5	0	0	0	0.053401	2	2109	2109;2122		127.46	42.546	1	2214100			63828	5939	44961	45024	69054;69055	69054					-0.01598722544190423
QQDQVDRNI	9	Unmodified	_QQDQVDRNI_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000473525.1_1_X:70516758-70517827:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.2753295898438	2	558.275626	1114.5367	-0.18649	-0.00010411	-0.34897	-0.00019482	-0.53546	-0.00029893	558.2753238055224	31.264	0.68665	31.333	31.04	31.726	0.068962					62	16	6	0	0	0	0.086035	1	2017	2017		115.49	45.866	1	1805200			63829	5939	44961	45024	69056	69056					-0.01598722544190423
QQDWSRGE	8	Unmodified	_QQDWSRGE_					0	0	0			REV__ENST00000463471.6_1_1:2493063-2493255:+|nuORF	REV__ENST00000463471.6_1_1:2493063-2493255:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.2227783203125	2	503.222862	1004.43117	-0.0036044	-1.8138E-06	0.31338	0.0001577	0.30978	0.00015589	503.2228423874563	47.082	1.2188	46.813	46.526	47.745	-0.26939					67	33	3	0	0	0	0.98759	1	4559	4559		39.253	0.44669	1	2853600	+		63830	32936	44962	45025	69057	69057					-0.07086638669807144
QQEEEGMY	8	Unmodified	_QQEEEGMY_					0	0	0		nc|ENSG00000184507|Q86Y26-2|NUTM1;nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1	nc|ENSG00000184507|Q86Y26-2|NUTM1	nc|ENSG00000184507|Q86Y26-2|NUTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3082580566406	2	507.197664	1012.38078	-1.0422	-0.00052859	-2.1002	-0.0010652	-3.1424	-0.0015938	507.1967713252757	43.553	0.24289	43.334	43.282	43.525	-0.21939					9	6	2	0	0	0	0.027866	1	4011	4011		33.516	6.7195	1	202690			63831	9345	44963	45026	69058	69058					-0.12491929109819466
QQELAEEIS	9	Unmodified	_QQELAEEIS_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2791748046875	2	523.753661	1045.49277	-0.71939	-0.00037678	0.70375	0.00036859	-0.01564	-8.1917E-06	523.754280503894	38.923	0.35784	38.824	38.591	38.949	-0.098755					13	9	2	0	0	0	0.024457	1	3260	3260		45.952	14.422	1	102390			63832	2323	44964	45027	69059	69059					-0.02815751761181673
QQEQQQSKAK	10	Unmodified	_QQEQQQSKAK_					0	0	0			REV__ENSG00000113742|ENST00000265085|CPEB4	REV__ENSG00000113742|ENST00000265085|CPEB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	602.8031616210938	2	601.809833	1201.60511	-0.15418	-9.2788E-05	-2.871	-0.0017278	-3.0252	-0.0018206	601.8083623751161	93.41	0.26231	93.266	93.133	93.395	-0.14411					8	5	2	0	0	0	0.03519	1	11488	11488		33.922	1.1092	1	28566	+		63833	22088	44965	45028	69060	69060					0.01237522035648908
QQFVLVNS	8	Unmodified	_QQFVLVNS_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.75177001953125	2	467.753267	933.491981	1.1614	0.00054326	-2.337	-0.0010931	-1.1756	-0.00054987	467.75205042268254	110.47	0.58345	110.47	110.27	110.86	0					36	18	3	0	0	0	1.0574	1	14034	14034		24.203	0	1	47561	+		63834	23842	44966	45029	69061	69061					0.022574983804247495
QQFYWIGL	8	Unmodified	_QQFYWIGL_					0	0	0		ENST00000539374.1_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-3|KLRD1;ENSG00000134539|ENST00000336164|KLRD1;nc|ENSG00000134539|Q13241-2|KLRD1	ENST00000539374.1_1_12:10464095-10467389:+|nuORF	ENST00000539374.1_1_12:10464095-10467389:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3255615234375	2	527.77146	1053.52837	-1.0221	-0.00053941	-2.4191	-0.0012768	-3.4412	-0.0018162	527.7701222497521	27.955	0.64435	27.787	27.487	28.132	-0.16816					28	15	2	0	0	0	0.027866	1	1633	1633		14.664	0	1	425200			63835	4807	44967	45030	69062	69062					0.0037437527712427254
QQGFVARTE	9	Unmodified	_QQGFVARTE_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.786865234375	2	518.26453	1034.51451	1.5179	0.00078665	1.2659	0.0006561	2.7838	0.0014427	518.2656703643437	25.01	0.3944	24.838	24.513	24.907	-0.17151					14	8	2	0	0	0	0.024292	1	1085	1085		49.442	17.487	1	126250			63836	4475	44968	45031	69063	69063					-0.0013690222197055846
QQGIKSQVLE	10	Unmodified	_QQGIKSQVLE_					0	0	0		ENST00000487958.5_1_3:183894781-183898060:+|nuORF	ENST00000487958.5_1_3:183894781-183898060:+|nuORF	ENST00000487958.5_1_3:183894781-183898060:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.31591796875	2	565.31422	1128.61389	-0.95477	-0.00053974	-0.61013	-0.00034491	-1.5649	-0.00088466	565.3143763865894	36.396	1.6804	36.354	35.963	37.643	-0.042454					152	45	6	0	0	0	0.94316	1	2918	2918		51.193	3.5354	1	28533000			63837	15380	44969	45032	69064	69064					0.054724956721202034
QQGLFLFF	8	Unmodified	_QQGLFLFF_					0	0	0		ENST00000530758.1_1_3:10168005-10168191:+|nuORF	ENST00000530758.1_1_3:10168005-10168191:+|nuORF	ENST00000530758.1_1_3:10168005-10168191:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3040771484375	2	500.268553	998.522553	0.89318	0.00044683	-3.1476	-0.0015746	-2.2544	-0.0011278	500.26515105371146	59.044	0.51052	59.044	58.86	59.37	0					24	13	3	0	0	0	0.027866	1	6695	6695		9.4706	0	1	136940			63838	16244	44970	45033	69065	69065					0.023232767654803865
QQGLFLFF	8	Unmodified	_QQGLFLFF_					0	0	0		ENST00000530758.1_1_3:10168005-10168191:+|nuORF	ENST00000530758.1_1_3:10168005-10168191:+|nuORF	ENST00000530758.1_1_3:10168005-10168191:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.268553	998.522553	1.5759	0.00078836	-6.219	-0.0031112	-4.6431	-0.0023228	500.2647469166206	59.288	0.32331	59.099	58.968	59.292	-0.18951	0.028464	-0.0018274	NaN	9.4706	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95105			63839	16244	44970	45033							0.023232767654803865
QQGLFLFF	8	Unmodified	_QQGLFLFF_					0	0	0		ENST00000530758.1_1_3:10168005-10168191:+|nuORF	ENST00000530758.1_1_3:10168005-10168191:+|nuORF	ENST00000530758.1_1_3:10168005-10168191:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	500.268553	998.522553	0.45136	0.0002258	-3.6101	-0.001806	-3.1588	-0.0015802	500.26597511240965	58.982	0.46413	59.067	58.813	59.277	0.085682	-0.0028543	0.00078287	NaN	9.4706	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147900			63840	16244	44970	45033							0.023232767654803865
QQHVIETLI	9	Unmodified	_QQHVIETLI_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8071899414062	2	540.806031	1079.59751	-0.47099	-0.00025471	1.0053	0.00054369	0.53434	0.00028898	540.8064116510059	57.777	1.147	57.777	57.496	58.643	0					55	30	3	0	0	0	0.06122	2	6503	6503;6513		124.59	0	1	9339800			63841	6151	44971	45034	69066;69067	69066					0.06089414506072899
QQHVIETLI	9	Unmodified	_QQHVIETLI_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8053588867188	2	540.806031	1079.59751	-1.109	-0.00059973	1.7438	0.00094308	0.63489	0.00034335	540.8068109854289	58.022	0.64174	57.847	57.646	58.287	-0.1749					43	17	4	0	0	0	0.06122	3	6527	6507;6516;6527		124.59	8.9727	1	6897000			63842	6151	44971	45034	69068;69069;69070	69070					0.06089414506072899
QQHVIETLI	9	Unmodified	_QQHVIETLI_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.80517578125	2	540.806031	1079.59751	-1.3215	-0.0007147	1.6992	0.00091895	0.37769	0.00020426	540.8068194671259	57.759	0.65255	57.855	57.575	58.228	0.095306					50	17	4	0	0	0	0.096521	1	6411	6411		111.65	0	1	7686900			63843	6151	44971	45034	69071	69071					0.06089414506072899
QQIAYEQY	8	Unmodified	_QQIAYEQY_					0	0	0			REV__nc|ENSG00000066827|Q9P243-3|ZFAT	REV__nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.25390625	2	521.745639	1041.47673	-0.38331	-0.00019999	-3.8696	-0.0020189	-4.2529	-0.0022189	521.7435307217105	28.436	0.80466	28.267	28.007	28.812	-0.16897					36	18	4	0	0	0	0.027866	1	1708	1708		47.916	27.434	1	362710	+		63844	20346	44972	45035	69072	69072					-0.04235413207425154
QQIELDLKA	9	Unmodified	_QQIELDLKA_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2977294921875	2	529.298039	1056.58152	-0.86191	-0.00045621	0.393	0.00020802	-0.46891	-0.00024819	529.2981090557425	56.157	1.1454	56.157	55.892	57.038	0					63	32	4	0	0	0	0.28753	2	6255	6255;6266		77.318	1.5089	1	5070600			63845	6905	44973	45036	69073;69074	69073					0.055497082691545074
QQIELDLKA	9	Unmodified	_QQIELDLKA_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2952880859375	2	529.298039	1056.58152	-0.72722	-0.00038492	0.39863	0.00021099	-0.32859	-0.00017392	529.2980755724693	56.244	0.72909	56.088	55.666	56.395	-0.15601					52	19	4	0	0	0	0.28753	2	6263	6250;6263		77.318	1.0018	1	4077800			63846	6905	44973	45036	69075;69076	69076					0.055497082691545074
QQIELDLKA	9	Unmodified	_QQIELDLKA_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2976684570312	2	529.298039	1056.58152	-0.76394	-0.00040435	-0.11411	-6.0399E-05	-0.87805	-0.00046475	529.2980663834438	55.984	1.0078	56.082	55.744	56.752	0.097893					72	27	4	0	0	0	0.28753	2	6127	6127;6149		77.318	1.6012	1	4160100			63847	6905	44973	45036	69077;69078	69077					0.055497082691545074
QQIGKIKKKT	10	Unmodified	_QQIGKIKKKT_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.8778076171875	2	586.379697	1170.74484	3.9535	0.0023183	-3.6734	-0.002154	0.28012	0.00016426	586.3774264125166	17.548	0.29302	17.297	17.128	17.421	-0.25049					7	5	2	0	0	0	1.1162	1	169	169		19.104	0.77911	1	30672	+		63848	22074	44974	45037	69079	69079					0.1662993111083324
QQIGKIKKKT	10	Unmodified	_QQIGKIKKKT_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	586.379697	1170.74484	-0.95597	-0.00056056	1.4333	0.00084048	0.47737	0.00027992	586.3804265061788	17.497	0.29855	17.29	17.116	17.414	-0.20669	-0.003618	0.00087233	NaN	19.104	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29240	+		63849	22074	44974	45037							0.1662993111083324
QQILEQWH	8	Unmodified	_QQILEQWH_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.3084716796875	2	541.274898	1080.53524	-0.61012	-0.00033024	-3.4152	-0.0018485	-4.0253	-0.0021788	541.2727354211272	42.815	0.32451	42.815	42.642	42.967	0					12	8	2	0	0	0	0.027866	1	3970	3970		51.335	1.8939	1	118320	+		63850	24273	44975	45038	69080	69080					-0.001803118423140404
QQILKQTKDRI	11	Unmodified	_QQILKQTKDRI_					0	0	0			REV__ENSG00000109944|ENST00000227349|JHY	REV__ENSG00000109944|ENST00000227349|JHY	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.608154296875	3	457.608659	1369.80415	0.77891	0.00035644	-2.1925	-0.0010033	-1.4136	-0.00064687	457.6077655587918	98.898	1.8258	98.761	97.927	99.752	-0.13625					121	44	3	0	0	0	1.0648	1	12214	12214		21.032	1.7696	1	383140	+		63851	21827	44976	45039	69081	69081					0.13403782334376046
QQIPISLHT	9	Unmodified	_QQIPISLHT_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.79248046875	2	518.792924	1035.57129	0.50168	0.00026027	-0.19114	-9.9164E-05	0.31054	0.00016111	518.7924951888543	55.49	0.71056	55.49	55.182	55.892	0					38	17	4	0	0	0	0.23085	1	6129	6129		84.916	13.62	1	2794800			63852	18822	44977	45040	69082	69082					0.05493145334571636
QQIPISLHT	9	Unmodified	_QQIPISLHT_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7928466796875	2	518.792924	1035.57129	-1.3637	-0.00070747	2.055	0.0010661	0.6913	0.00035864	518.7934625656593	55.3	1.1303	55.398	55.116	56.246	0.098011					44	18	4	0	0	0	0.53979	1	6031	6031		56.721	1.9564	1	2581300			63853	18822	44977	45040	69083	69083					0.05493145334571636
QQIPRLLESHS	11	Unmodified	_QQIPRLLESHS_					0	0	0			REV__ENST00000367545.7_1_6:144783967-144794892:+|nuORF	REV__ENST00000367545.7_1_6:144783967-144794892:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.248046875	3	436.573726	1306.69935	-0.12193	-5.3232E-05	-0.31302	-0.00013666	-0.43495	-0.00018989	436.5727735645324	33.948	0.83365	33.724	33.2	34.033	-0.22412					26	20	2	0	0	0	0.024759	1	2478	2478		23.378	0	1	121930	+		63854	31024	44978	45041	69084	69084					0.05826660857792376
QQIQKVVM	8	Oxidation (M)	_QQIQKVVM(Oxidation (M))_		QQIQKVVM(1)		QQIQKVVM(75)	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2757263183594	2	495.276052	988.537551	0.11868	5.878E-05	-0.46245	-0.00022904	-0.34377	-0.00017026	495.27572290003684	31.913	1.2587	31.728	31.245	32.504	-0.18503					69	29	5	0	0	0	0.61897	1	2151	2151		74.517	11.21	1	1724000			63855	6905	44979	45042	69085	69085		284			0.04282400571173639
QQIQKVVM	8	Oxidation (M)	_QQIQKVVM(Oxidation (M))_		QQIQKVVM(1)		QQIQKVVM(80)	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2759094238281	2	495.276052	988.537551	-0.44821	-0.00022199	0.12726	6.3027E-05	-0.32096	-0.00015896	495.2759513370326	31.973	1.2568	31.815	31.227	32.484	-0.15772					73	30	5	0	0	0	0.56067	1	2164	2164		79.939	14.136	1	1870900			63856	6905	44979	45042	69086	69086		284			0.04282400571173639
QQIQKVVM	8	Unmodified	_QQIQKVVM_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2780456542969	2	487.278595	972.542637	-0.13695	-6.6732E-05	-2.0305	-0.0009894	-2.1674	-0.0010561	487.27746688226586	40.54	0.92827	40.315	40.041	40.969	-0.225					60	24	3	0	0	0	0.88442	1	3523	3523		52.299	2.2746	1	3002000			63857	6905	44979	45043	69087	69087					0.0552670443378247
QQKAIETAQI	10	Unmodified	_QQKAIETAQI_					0	0	0			REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.3161010742188	2	565.31422	1128.61389	-0.55768	-0.00031526	4.113	0.0023251	3.5553	0.0020099	565.3164309945279	95.114	1.291	95.114	94.573	95.864	0					78	29	4	0	0	0	0.62431	1	12111	12111		74.255	3.4388	1	2251100	+		63858	20246	44980	45044	69088	69088					0.054724956721202034
QQKAPMLVS	9	Unmodified	_QQKAPMLVS_					0	0	0		ENST00000489483.5_1_3:48668913-48669282:-|nuORF	ENST00000489483.5_1_3:48668913-48669282:-|nuORF	ENST00000489483.5_1_3:48668913-48669282:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.29217529296875	2	501.276052	1000.53755	-0.53534	-0.00026835	-0.86649	-0.00043435	-1.4018	-0.0007027	501.2738407210022	57.306	0.21519	57.081	56.923	57.138	-0.2248					8	5	2	0	0	0	0.023181	1	6229	6229		71.296	0	1	129870			63859	15411	44981	45045	69089	69089					0.03730400571168957
QQKDLSLLY	9	Unmodified	_QQKDLSLLY_					0	0	0			REV__ENST00000393077.2_1_10:114575138-114575192:+|nuORF	REV__ENST00000393077.2_1_10:114575138-114575192:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.3057250976562	2	554.305864	1106.59717	-0.51082	-0.00028315	-0.055088	-3.0536E-05	-0.56591	-0.00031369	554.3056540450171	75.835	1.2779	75.563	75.227	76.505	-0.27266					79	31	4	0	0	0	0.62163	1	8967	8967		51.335	0	1	4203200	+		63860	31631	44982	45046	69090	69090					0.04813994786218245
QQKILKLT	8	Unmodified	_QQKILKLT_					0	0	0		nc|ENSG00000172765|O94876-2|TMCC1;ENSG00000172765|ENST00000393238|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.74542236328125	2	486.316035	970.617516	-0.94494	-0.00045954	0.90479	0.00044002	-0.040142	-1.9522E-05	486.3163394288894	61.947	0.32215	61.947	61.758	62.08	0					15	8	2	0	0	0	0.027866	1	7211	7211		54.765	0	1	167100			63861	8302	44983	45047	69091	69091					0.13103210236658924
QQKQKVKTC	9	Unmodified	_QQKQKVKTC_					0	0	0			REV__nc|ENSG00000116584|Q92974-2|ARHGEF2	REV__nc|ENSG00000116584|Q92974-2|ARHGEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8037109375	2	545.805508	1089.59646	0.15607	8.5183E-05	-3.4469	-0.0018813	-3.2908	-0.0017961	545.8035193980013	21.797	0.62058	21.62	21.35	21.971	-0.17721					33	12	4	0	0	0	0.50848	1	728	728		58.782	5.4305	1	342320	+		63862	22283	44984	45048	69092	69092					0.055248768655019376
QQKREEIF	8	Unmodified	_QQKREEIF_					0	0	0		nc|ENSG00000164221|Q8NEF3|CCDC112;ENSG00000164221|ENST00000379611|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2864990234375	2	539.288005	1076.56146	1.2189	0.00065731	2.0266	0.0010929	3.2454	0.0017502	539.2888166110275	16.939	0.3015	16.785	16.655	16.957	-0.15378					12	5	3	0	0	0	0.59392	1	121	121		76.847	8.3619	1	74938			63863	7242	44985	45049	69093	69093					0.02623957329183213
QQLDLDPVI	9	Unmodified	_QQLDLDPVI_					0	0	0			REV__ENSG00000159256|ENST00000400485|MORC3	REV__ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7833862304688	2	520.784764	1039.55498	-0.065214	-3.3962E-05	-0.92283	-0.00048059	-0.98804	-0.00051456	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	0.87448	1	13656	13656		34.173	0	1	7303900	+		63864	25243	44986	45050	69094	69094					0.036780193777985914
QQLDLDPVI	9	Unmodified	_QQLDLDPVI_					0	0	0			REV__ENSG00000159256|ENST00000400485|MORC3	REV__ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7840576171875	2	520.784764	1039.55498	-0.17121	-8.9164E-05	-0.92176	-0.00048004	-1.093	-0.0005692	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	0.75397	2	13637	13629;13637		42.396	10.866	1	7199700	+		63865	25243	44986	45050	69095;69096	69096					0.036780193777985914
QQLDLDPVI	9	Unmodified	_QQLDLDPVI_					0	0	0			REV__ENSG00000159256|ENST00000400485|MORC3	REV__ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7838134765625	2	520.784764	1039.55498	-0.95638	-0.00049807	-0.21074	-0.00010975	-1.1671	-0.00060781	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	0.6504	2	13271	13271;13278		49.442	6.9671	1	3485700	+		63866	25243	44986	45050	69097;69098	69097					0.036780193777985914
QQLDPDEKI	9	Unmodified	_QQLDPDEKI_					0	0	0		RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK;ENST00000482549.5_1_7:102006508-102038101:+|nuORF;ENST00000477886.5_1_7:102004828-102038101:+|nuORF;ENST00000484974.5_1_7:102006508-102020987:+|nuORF;nc|ENSG00000146587|Q9NYW8-2|RBAK;ENST00000496391.5_2_7:102006508-102036635:+|nuORF	RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant	RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.7991943359375	2	543.277303	1084.54005	-0.14335	-7.7879E-05	-1.8837	-0.0010233	-2.027	-0.0011012	543.275950306005	72.013	0.74497	71.725	71.427	72.172	-0.28858					44	19	3	0	0	0	0.024344	1	8710	8710		54.776	19.624	1	1007900			63867	5895	44987	45051	69099	69099					0.001165275098173879
QQLDPDEKI	9	Unmodified	_QQLDPDEKI_					0	0	0		RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK;ENST00000482549.5_1_7:102006508-102038101:+|nuORF;ENST00000477886.5_1_7:102004828-102038101:+|nuORF;ENST00000484974.5_1_7:102006508-102020987:+|nuORF;nc|ENSG00000146587|Q9NYW8-2|RBAK;ENST00000496391.5_2_7:102006508-102036635:+|nuORF	RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant	RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.7957763671875	2	543.277303	1084.54005	-0.39929	-0.00021692	-1.6818	-0.00091371	-2.0811	-0.0011306	543.2759839974689	71.741	0.51468	71.751	71.543	72.058	0.0097733					37	13	4	0	0	0	0.024261	1	8637	8637		64.207	25.401	1	1266200			63868	5895	44987	45051	69100	69100					0.001165275098173879
QQLEQELQQ	9	Unmodified	_QQLEQELQQ_					0	0	0		ENST00000486060.1_1_6:31112443-31112875:-|nuORF;ENST00000509552.5_1_6:31112443-31124902:-|nuORF;nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.8501586914062	2	572.28566	1142.55677	3.4476	0.001973	0.59639	0.00034131	4.044	0.0023143	572.2857365421604	18.207	0.49846	17.964	17.776	18.274	-0.24256					17	9	3	0	0	0	0.0242	1	233	233		79.713	18.741	1	76123	+		63869	28615	44988	45052	69101	69101					-0.008809716042378568
QQLEQQLEQ	9	Unmodified	_QQLEQQLEQ_					0	0	0		ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.850341796875	2	572.28566	1142.55677	1.0373	0.00059362	3.3238	0.0019022	4.3611	0.0024958	572.2873630480951	18.17	0.34339	18.013	17.805	18.148	-0.15637					15	6	3	0	0	0	0.024257	1	250	250		77.318	5.4401	1	61707			63870	10740	44989	45053	69102	69102					-0.008809716042378568
QQLEQQLEQ	9	Unmodified	_QQLEQQLEQ_					0	0	0		ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.8504028320312	2	572.28566	1142.55677	0.065079	3.7244E-05	4.1295	0.0023632	4.1946	0.0024005	572.2876896367096	18.177	0.3962	17.972	17.815	18.212	-0.20468					10	7	2	0	0	0	0.022734	1	255	255		93.598	5.4206	1	64267			63871	10740	44989	45053	69103	69103					-0.008809716042378568
QQLFVCNAAS	10	Unmodified	_QQLFVCNAAS_					0	0	0			REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF	REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.7928466796875	2	540.760766	1079.50698	0.33429	0.00018077	-1.2102	-0.00065443	-0.87592	-0.00047366	541.2606382700684	77.955	0.50575	77.713	77.575	78.081	-0.24232					15	11	2	0	0	0	0.03519	1	9333	9333		20.947	4.4738	1	95993	+		63872	30615	44990	45054	69104	69104					-0.029593778138860216
QQLIWANS	8	Unmodified	_QQLIWANS_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2846984863281	2	480.250892	958.48723	-0.23331	-0.00011205	1.0713	0.0005145	0.83801	0.00040245	480.2502663622252	75.784	0.53663	75.54	75.374	75.911	-0.24455					22	14	2	0	0	0	0.027866	1	9279	9279		30.504	0	1	269320	+		63873	22180	44991	45055	69105	69105					0.006326142376565258
QQLKQEPIR	9	Unmodified	_QQLKQEPIR_					0	0	0		ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.3316650390625	2	570.330205	1138.64586	-0.65133	-0.00037147	3.4263	0.0019541	2.775	0.0015827	570.3320622671632	46.875	0.80816	46.875	46.587	47.395	0					61	21	5	0	0	0	0.14024	3	4663	4653;4663;4677		101.6	30.305	1	4875100			63874	13754	44992	45056	69106;69107;69108	69107					0.08207908145936926
QQLKQEPIR	9	Unmodified	_QQLKQEPIR_					0	0	0		ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.3318481445312	2	570.330205	1138.64586	0.11556	6.5905E-05	2.7038	0.0015421	2.8194	0.001608	570.3316518386772	47.046	0.85621	46.893	46.55	47.406	-0.153					63	22	5	0	0	0	0.26966	2	4683	4669;4683		79.713	18.741	1	3872800			63875	13754	44992	45056	69109;69110	69110					0.08207908145936926
QQLKQEPIR	9	Unmodified	_QQLKQEPIR_					0	0	0		ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.3316040039062	2	570.330205	1138.64586	-1.0375	-0.00059174	3.8928	0.0022202	2.8552	0.0016284	570.3323317190719	46.879	0.69715	46.938	46.657	47.354	0.059097					53	18	4	0	0	0	0.14024	2	4607	4607;4620		101.6	27.346	1	4512700			63876	13754	44992	45056	69111;69112	69111					0.08207908145936926
QQLLDNFAM	9	Unmodified	_QQLLDNFAM_					0	0	0			REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7925415039062	2	540.263142	1078.51173	-0.6886	-0.00037203	-3.7702	-0.0020369	-4.4588	-0.002409	540.259388901011	78.371	0.82478	78.371	78.042	78.867	0					40	19	3	0	0	0	0.024535	1	9767	9767		25.45	10.585	1	166360	+		63877	28361	44993	45057	69113	69113					-0.024384936711157934
QQLLDSITL	9	Unmodified	_QQLLDSITL_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MSMS	OPSCC_39_ClassI_Rep-3	3	515.7897338867188	2	515.792589	1029.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.271	1	52.363	51.863	52.863	0.091938								0	0	0	0.1211	1	5520	5520		87.754	10.437	1		+		63878	28601	44994	45058	69114	69114					0.057023058948516336
QQLLFLLPE	9	Unmodified	_QQLLFLLPE_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant;nc|ENSG00000171456|Q8IXJ9-2|ASXL1;ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant;ASXL1|p.K539Sfs*164|1|0.35|ENSG00000171456|chr20:32433813-32433813|A/-|frameshift_variant	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2947998046875	2	550.82115	1099.62775	0.64496	0.00035526	-0.71384	-0.0003932	-0.068883	-3.7942E-05	550.8205113178158	96.246	1.104	96.248	95.868	96.972	0.0020752					45	25	3	0	0	0	0.024457	1	12174	12174		29.15	2.4566	1	266450			63879	8152	44995	45059	69115	69115					0.08191773171211025
QQLLFLLPE	9	Unmodified	_QQLLFLLPE_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant;nc|ENSG00000171456|Q8IXJ9-2|ASXL1;ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant;ASXL1|p.K539Sfs*164|1|0.35|ENSG00000171456|chr20:32433813-32433813|A/-|frameshift_variant	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.82115	1099.62775	0.73319	0.00040386	-0.6368	-0.00035076	0.096397	5.3098E-05	550.820599198754	96.151	0.93114	96.028	95.597	96.528	-0.12305	-0.13697	-0.00064261	NaN	29.15	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69280			63880	8152	44995	45059							0.08191773171211025
QQLLFLLPE	9	Unmodified	_QQLLFLLPE_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant;nc|ENSG00000171456|Q8IXJ9-2|ASXL1;ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant;ASXL1|p.K539Sfs*164|1|0.35|ENSG00000171456|chr20:32433813-32433813|A/-|frameshift_variant	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.82115	1099.62775	-0.33653	-0.00018537	-0.25471	-0.0001403	-0.59124	-0.00032567	550.8214514777476	96.218	0.89111	96.061	95.664	96.555	-0.15646	-0.10403	-0.00022169	NaN	29.15	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62415			63881	8152	44995	45059							0.08191773171211025
QQLLNRERLL	10	Unmodified	_QQLLNRERLL_					0	0	0			REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	REV__nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8828125	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0271	1	11941	11941		42.396	1.618	1	3453200	+		63882	24760	44996	45060	69116	69116					0.12211243991418996
QQLLRMLL	8	Unmodified	_QQLLRMLL_					0	0	0			REV__ENST00000485978.1_1_9:136338979-136343630:-|nuORF	REV__ENST00000485978.1_1_9:136338979-136343630:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.80255126953125	2	507.810062	1013.60557	0.23755	0.00012063	1.1668	0.00059251	1.4043	0.00071314	508.31321646669267	62.789	0.12833	62.843	62.76	62.888	0.054104					4	2	2	0	0	0	0.027866	1	7231	7231		25.45	0	1	68967	+		63883	25313	44997	45061	69117	69117					0.09931270221829891
QQLPARLR	8	Unmodified	_QQLPARLR_					0	0	0			REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.27166748046875	2	491.30125	980.587947	-0.24403	-0.00011989	-0.73716	-0.00036217	-0.98119	-0.00048206	491.3007525160802	33.849	0.6355	33.849	33.454	34.09	0					37	16	3	0	0	0	0.027866	1	2478	2478		31.955	18.996	1	535170	+		63884	33536	44998	45062	69118	69118					0.09687691011174593
QQLPTPHRMT	10	Unmodified	_QQLPTPHRMT_					0	0	0			REV__ENSG00000115904|ENST00000402219|SOS1	REV__ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	403.545002	1207.61318	0.60924	0.00024586	-2.8193	-0.0011377	-2.2101	-0.00089186	403.543818409739	32.11	0.96978	31.873	31.116	32.086	-0.23667					40	23	3	0	0	0	0.03519	1	2177	2177		30.569	0	1	172620	+		63885	22239	44999	45063	69119	69119					0.01767377751434651
QQLRDFPKP	9	Unmodified	_QQLRDFPKP_					0	0	0			REV__nc|ENSG00000183337|Q6W2J9-4|BCOR	REV__nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8448486328125	2	564.811648	1127.60874	-0.5791	-0.00032708	-1.1182	-0.00063156	-1.6973	-0.00095864	564.810827358527	65.598	0.80714	65.635	65.321	66.128	0.037376					58	21	4	0	0	0	0.024457	1	7735	7735		37.159	15.199	1	2572400	+		63886	27566	45000	45064	69120	69120					0.05004236600166223
QQLTQQQL	8	Unmodified	_QQLTQQQL_					0	0	0		nc|ENSG00000156531|Q8IWS0-5|PHF6;nc|ENSG00000156531|Q8IWS0-3|PHF6;ENSG00000156531|ENST00000370803|PHF6	nc|ENSG00000156531|Q8IWS0-5|PHF6	nc|ENSG00000156531|Q8IWS0-5|PHF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7904968261719	2	493.766906	985.519259	0.073229	3.6158E-05	1.0034	0.00049542	1.0766	0.00053158	493.7673854071826	24.128	0.45204	24.207	24.003	24.455	0.078344					16	9	2	0	0	0	0.027866	1	990	990		51.335	10.557	1	48618			63887	6539	45001	45065	69121	69121					0.025919819208070294
QQNFQRSAF	9	Unmodified	_QQNFQRSAF_					0	0	0		ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2;nc|ENSG00000172468|Q96LI6-2|HSFY1;nc|ENSG00000172468|Q96LI6-3|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2847900390625	2	563.275429	1124.53631	0.03135	1.7658E-05	-1.1602	-0.00065351	-1.1288	-0.00063585	563.2747987101899	49.657	1.0225	49.377	49.123	50.145	-0.27977					70	26	4	0	0	0	0.024405	1	5070	5070		35.618	0	1	8946900			63888	7995	45002	45066	69122	69122					-0.020980974733902258
QQNGTPLKV	9	Unmodified	_QQNGTPLKV_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7773742675781	2	492.777274	983.539994	0.11017	5.429E-05	-0.75185	-0.0003705	-0.64168	-0.00031621	492.77693176863676	36.595	0.72519	36.595	36.162	36.887	0					61	19	4	0	0	0	0.077175	3	2940	2906;2916;2940		118.74	26.739	1	9733200			63889	18822	45003	45067	69123;69124;69125	69125					0.04756572300470907
QQNGTPLKV	9	Unmodified	_QQNGTPLKV_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.77716064453125	2	492.777274	983.539994	-0.61647	-0.00030378	-0.10932	-5.3872E-05	-0.7258	-0.00035766	492.7772322271708	36.446	0.58902	36.404	36.101	36.69	-0.042454					66	15	5	0	0	0	0.077175	3	2894	2871;2894;2907		118.74	28.373	1	8949700			63890	18822	45003	45067	69126;69127;69128	69127					0.04756572300470907
QQNGTPLKV	9	Unmodified	_QQNGTPLKV_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.7774658203125	2	492.777274	983.539994	-0.58139	-0.0002865	0.1337	6.5885E-05	-0.44769	-0.00022061	492.77735506792254	36.519	0.63688	36.557	36.166	36.803	0.038044					70	17	5	0	0	0	0.19099	4	2855	2832;2843;2855;2867		90.37	26.163	1	8954300			63891	18822	45003	45067	69129;69130;69131;69132	69131					0.04756572300470907
QQNGTPLKV	9	Unmodified	_QQNGTPLKV_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.777274	983.539994	1.7803	0.00087731	-0.84849	-0.00041812	0.93185	0.0004592	492.77644219456215	36.648	0.28512	36.446	36.247	36.532	-0.20224	-0.05447	-0.00063188	NaN	118.74	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45876			63892	18822	45003	45067							0.04756572300470907
QQNLLAAL	8	Unmodified	_QQNLLAAL_					0	0	0			REV__nc|ENSG00000107758|P16298-2|PPP3CB	REV__nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.7403259277344	2	435.75581	869.497067	0.17488	7.6207E-05	0.16619	7.2418E-05	0.34107	0.00014862	435.7557850276154	45.176	0.55284	45.22	44.824	45.377	0.043877					19	15	2	0	0	0	0.027866	1	4286	4286		50.025	7.5501	1	121530	+		63893	36553	45004	45068	69133	69133					0.057098022430295714
QQNPLVQRV	9	Unmodified	_QQNPLVQRV_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3084106445312	2	541.309272	1080.60399	-0.66122	-0.00035792	0.29344	0.00015884	-0.36778	-0.00019908	541.3092771552763	43.047	0.97635	42.907	42.345	43.321	-0.13929					69	26	3	0	0	0	0.35646	2	3977	3977;3989		68.787	7.4465	1	3100500			63894	10611	45005	45069	69134;69135	69134					0.06691352457414723
QQNPLVQRV	9	Unmodified	_QQNPLVQRV_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.3088989257812	2	541.309272	1080.60399	-0.39825	-0.00021558	0.030751	1.6646E-05	-0.3675	-0.00019893	541.3091665097623	42.964	1.159	42.995	42.363	43.522	0.030827					73	31	3	0	0	0	0.15029	2	3937	3924;3937		99.375	12.066	1	3304400			63895	10611	45005	45069	69136;69137	69137					0.06691352457414723
QQNPLVQRV	9	Unmodified	_QQNPLVQRV_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	541.309272	1080.60399	-0.62264	-0.00033704	0.20891	0.00011308	-0.41373	-0.00022396	541.3092437878355	42.849	1.115	42.849	42.289	43.404	0	-0.068497	6.9047E-05	NaN	99.375	76	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3208100			63896	10611	45005	45069							0.06691352457414723
QQPGRLWK	8	Unmodified	_QQPGRLWK_					0	0	0			REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7893981933594	2	506.787976	1011.5614	1.5653	0.00079326	1.6146	0.00081825	3.1799	0.0016115	506.7887575915182	16.334	0.25115	16.181	16.068	16.319	-0.15376					16	9	2	0	0	0	1.0574	1	61	61		26.796	1.3459	1	52303	+		63897	29748	45006	45070	69138	69138					0.05608002119845423
QQPKGLPVPL	10	Unmodified	_QQPKGLPVPL_					0	0	0			REV__ENST00000312584.3_1_8:23003318-23003372:-|nuORF	REV__ENST00000312584.3_1_8:23003318-23003372:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7928466796875	2	538.826766	1075.63898	-0.6672	-0.00035951	3.4835	0.001877	2.8163	0.0015175	538.8288802503985	78.369	0.83298	78.369	78.202	79.035	0					24	19	2	0	0	0	0.03519	1	9778	9778		37.159	4.3467	1	126400	+		63898	30222	45007	45071	69139	69139					0.1041859526535518
QQPLLLKAR	9	Unmodified	_QQPLLLKAR_					0	0	0			REV__nc|ENSG00000273756|P0DX02|GOLGA6L26	REV__nc|ENSG00000273756|P0DX02|GOLGA6L26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7999877929688	2	533.840208	1065.66586	-0.61321	-0.00032736	-0.39645	-0.00021164	-1.0097	-0.000539	533.8399591558048	56.999	0.70601	57.095	56.614	57.32	0.095306					25	19	2	0	0	0	0.024477	1	6343	6343		27.882	4.8398	1	147930	+		63899	29179	45008	45072	69140	69140					0.13565703876543012
QQQLRNFS	8	Unmodified	_QQQLRNFS_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ZFC3H1|p.P578Hfs*4|1|0.11|ENSG00000133858|chr12:71637052-71637053|-/GT|frameshift_variant;ZFC3H1|p.P578Kfs*5|1|0.1|ENSG00000133858|chr12:71637054-71637055|-/TCTTG|frameshift_variant;nc|ENSG00000133858|O60293-4|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7644958496094	2	510.764697	1019.51484	-0.73319	-0.00037449	-0.083014	-4.2401E-05	-0.8162	-0.00041689	510.76470702365367	25.738	1.2452	25.703	25.313	26.558	-0.034395					75	29	5	0	0	0	0.845	1	1249	1249		55.504	0	1	7734100			63900	4735	45009	45073	69141	69141					0.0058651749790215035
QQQMNQLKNT	10	Unmodified	_QQQMNQLKNT_					0	0	0		ENSG00000110367|ENST00000534980|DDX6;ENST00000533239.1_1_11:118656759-118656960:-|nuORF;ENST00000525082.1_1_11:118639020-118656960:-|nuORF	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.8876647949219	3	411.539916	1231.59792	-0.038695	-1.5925E-05	-2.9672	-0.0012211	-3.0059	-0.0012371	411.5388129245128	27.748	0.64392	27.506	27.119	27.763	-0.24217					29	14	3	0	0	0	0.03519	1	1556	1556		39.873	0	1	166870			63901	3038	45010	45074	69142	69142					-0.008615338364279523
QQQPTPPL	8	Unmodified	_QQQPTPPL_					0	0	0			REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7449035644531	2	454.745442	907.476331	0.44258	0.00020126	-1.8786	-0.00085427	-1.436	-0.00065301	454.7444987549907	101.14	1.784	101.14	100.7	102.48	0					105	40	5	0	0	0	0.96719	1	12918	12918		42.474	3.6683	1	4485300	+		63902	27300	45011	45075	69143	69143					0.018892118633857535
QQQQQELQK	9	Unmodified	_QQQQQELQK_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.837890625	2	579.299101	1156.58365	-1.7617	-0.0010205	1.4674	0.00085008	-0.29424	-0.00017045	579.2998744228004	38.699	0.50201	38.699	38.433	38.935	0					33	12	4	0	0	0	0.024523	1	3227	3227		37.159	0	1	895540	+		63903	24762	45012	45076	69144	69144					0.011621370069406112
QQQQQELQQ	9	Unmodified	_QQQQQELQQ_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.837890625	2	579.280909	1156.54726	-2.1973	-0.0012729	-2.3586	-0.0013663	-4.5559	-0.0026392	579.279312438759	38.253	0.50366	38.253	37.969	38.473	0					18	14	2	0	0	0	0.024523	1	3227	3227		37.159	0	1	220150	+		63904	28935	45013	45077	69145	69145					-0.024747398897488893
QQQQQMHLQ	9	Unmodified	_QQQQQMHLQ_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8029174804688	2	584.780022	1167.54549	-0.92122	-0.00053871	-3.276	-0.0019158	-4.1973	-0.0024545	584.7784294063198	53.821	0.099808	53.576	53.525	53.625	-0.2453					4	2	2	0	0	0	0.024535	1	5655	5655		25.45	4.5032	1	999620			63905	4054	45014	45078	69146	69146					-0.03158072179348892
QQQQQQEKL	9	Unmodified	_QQQQQQEKL_					0	0	0		ENSG00000151065|ENST00000280665|DCP1B;nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF	ENSG00000151065|ENST00000280665|DCP1B	ENSG00000151065|ENST00000280665|DCP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.8374633789062	2	579.299101	1156.58365	-0.91247	-0.00052859	0.69538	0.00040283	-0.21709	-0.00012576	579.299348299643	38.621	0.49904	38.527	38.243	38.742	-0.093781					34	12	3	0	0	0	0.024261	1	3208	3208		74.255	47.562	1	769520			63906	6174	45015	45079	69147	69147					0.011621370069406112
QQQQQQEKL	9	Unmodified	_QQQQQQEKL_					0	0	0		ENSG00000151065|ENST00000280665|DCP1B;nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF	ENSG00000151065|ENST00000280665|DCP1B	ENSG00000151065|ENST00000280665|DCP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.83740234375	2	579.299101	1156.58365	-1.3399	-0.00077619	1.056	0.00061175	-0.28385	-0.00016444	579.2996110314617	38.823	0.49483	38.851	38.572	39.067	0.027275					33	12	4	0	0	0	0.017891	1	3194	3194		133.81	0	1	759550			63907	6174	45015	45079	69148	69148					0.011621370069406112
QQQQQQEQL	9	Unmodified	_QQQQQQEQL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B;REV__ENSG00000130733|ENST00000586748|YIPF2	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.8374633789062	2	579.280909	1156.54726	-1.2749	-0.00073852	-2.7682	-0.0016036	-4.0431	-0.0023421	579.2790492516119	38.224	0.68227	38.142	37.848	38.531	-0.082516					23	18	2	0	0	0	0.024261	1	3208	3208		74.255	5.4682	1	201100			63908	18822;23145	45016	45080	69149	69149					-0.024747398897488893
QQQQQQEQL	9	Unmodified	_QQQQQQEQL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B;REV__ENSG00000130733|ENST00000586748|YIPF2	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	579.280909	1156.54726	-1.8077	-0.0010472	-2.1562	-0.001249	-3.9639	-0.0022962	579.2794902850724	38.344	0.382	38.371	38.23	38.612	0.027275	0.11553	0.00025686	NaN	129.68	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218690			63909	18822;23145	45016	45080							-0.024747398897488893
QQQQQQLE	8	Unmodified	_QQQQQQLE_					0	0	0			REV__nc|ENSG00000133069|O75069-3|TMCC2;REV__nc|ENSG00000172765|O94876-2|TMCC1	REV__nc|ENSG00000172765|O94876-2|TMCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2291259765625	2	515.25162	1028.48869	-0.052155	-2.6873E-05	4.4482	0.002292	4.3961	0.0022651	515.2536542525964	62.035	0.46924	61.778	61.588	62.058	-0.25725					18	11	2	0	0	0	0.027866	1	6972	6972		26.796	1.3459	1	592330	+		63910	23345;26706	45017	45081	69150	69150					-0.024417964642225343
QQQQQQLE	8	Unmodified	_QQQQQQLE_					0	0	0			REV__nc|ENSG00000133069|O75069-3|TMCC2;REV__nc|ENSG00000172765|O94876-2|TMCC1	REV__nc|ENSG00000172765|O94876-2|TMCC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.25162	1028.48869	-0.80975	-0.00041723	5.6188	0.0028951	4.809	0.0024779	515.2543855778114	61.877	0.34636	61.7	61.536	61.883	-0.17782	-0.032443	0.00070325	NaN	19.36	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570420	+		63911	23345;26706	45017	45081							-0.024417964642225343
QQQQWRLTPSY	11	Unmodified	_QQQQWRLTPSY_					0	0	0			REV__ENST00000418195.1_1_3:42018516-42019344:+|nuORF	REV__ENST00000418195.1_1_3:42018516-42019344:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2817687988281	3	478.908997	1433.70516	0.85979	0.00041176	-1.4901	-0.0007136	-0.63027	-0.00030184	478.9081444530829	20.417	0.62977	20.221	19.805	20.435	-0.19577					25	12	3	0	0	0	0.024821	1	549	549		14.086	0.57807	1	82722	+		63912	32111	45018	45082	69151	69151					0.005657593694877505
QQQRLLAPP	9	Unmodified	_QQQRLLAPP_					0	0	0		nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENSG00000076826|ENST00000160298|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2543334960938	2	525.806365	1049.59818	-0.8631	-0.00045382	1.1659	0.00061303	0.30278	0.0001592	525.8070046841548	38.262	0.39641	38.041	37.898	38.294	-0.22149					13	11	2	0	0	0	0.024535	1	3177	3177		18.324	0.95945	1	137790			63913	1591	45019	45083	69152	69152					0.07536253945772842
QQRRYPKP	8	Unmodified	_QQRRYPKP_					0	0	0			REV__ENST00000252934.9_1_22:46238880-46238985:+|nuORF	REV__ENST00000252934.9_1_22:46238880-46238985:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7932739257812	2	536.804157	1071.59376	-0.4126	-0.00022149	-0.80625	-0.0004328	-1.2189	-0.00065429	536.8036201895932	25.045	0.25844	25.125	24.916	25.174	0.08009					8	5	2	0	0	0	0.027866	1	1074	1074		24.203	2.2429	1	30542	+		63914	29517	45020	45084	69153	69153					0.06082789522838539
QQRYVLKI	8	Unmodified	_QQRYVLKI_					0	0	0		nc|ENSG00000091879|O15123-2|ANGPT2;ENSG00000091879|ENST00000629816|ANGPT2;nc|ENSG00000091879|O15123|ANGPT2	nc|ENSG00000091879|O15123-2|ANGPT2	nc|ENSG00000091879|O15123-2|ANGPT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2905883789062	2	524.319109	1046.62366	0.47487	0.00024898	-1.712	-0.00089762	-1.2371	-0.00064863	524.3165078485326	71.641	0.3929	71.435	71.225	71.618	-0.20613					17	9	3	0	0	0	0.027866	1	8379	8379		42.474	0	1	196640			63915	1971	45021	45085	69154	69154					0.10221728468172842
QQSHPTAT	8	Unmodified	_QQSHPTAT_					0	0	0		ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3	ENSG00000168056|ENST00000301873|LTBP3	ENSG00000168056|ENST00000301873|LTBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.21112060546875	2	435.209224	868.403895	0.71956	0.00031316	0.71298	0.0003103	1.4325	0.00062345	435.20897636286816	99.071	1.6509	98.936	98.026	99.677	-0.13526					76	39	3	0	0	0	0.99042	1	12288	12288		38.806	0	1	208370			63916	7777	45022	45086	69155	69155					-0.035571222101793865
QQSIERLLV	9	Unmodified	_QQSIERLLV_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3192138671875	2	543.319306	1084.62406	0.61192	0.00033247	-1.5201	-0.00082589	-0.90816	-0.00049342	543.3186571493164	59.653	1.5878	59.653	59.257	60.845	0					123	42	6	0	0	0	0.37611	3	6812	6812;6824;6837		67.494	10.773	1	9557600			63917	2140	45023	45087	69156;69157;69158	69156					0.08513103397376653
QQSIERLLV	9	Unmodified	_QQSIERLLV_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3187255859375	2	543.319306	1084.62406	-0.54709	-0.00029724	-0.13738	-7.464E-05	-0.68447	-0.00037188	543.3192757889772	59.798	1.5288	59.597	59.318	60.847	-0.20016					97	40	4	0	0	0	0.28753	3	6820	6808;6820;6833		77.318	10.888	1	9378200			63918	2140	45023	45087	69159;69160;69161	69160					0.08513103397376653
QQSIERLLV	9	Unmodified	_QQSIERLLV_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3193359375	2	543.319306	1084.62406	-0.72331	-0.00039299	0.18859	0.00010246	-0.53473	-0.00029053	543.3194521198021	59.51	1.4855	59.596	59.206	60.691	0.085682					94	39	4	0	0	0	0.2101	2	6718	6718;6730		87.696	15.819	1	8118900			63919	2140	45023	45087	69162;69163	69162					0.08513103397376653
QQSLYCAMPQ	10	Unmodified	_QQSLYCAMPQ_					0	0	0			REV__ENST00000373502.9_1_X:72804329-72899201:+|nuORF	REV__ENST00000373502.9_1_X:72804329-72899201:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.8029174804688	2	584.759909	1167.50526	-0.0081779	-4.7821E-06	0.53894	0.00031515	0.53076	0.00031037	584.7599404022817	54.476	0.41529	54.269	54.016	54.431	-0.20613					18	10	2	0	0	0	0.03519	1	5737	5737		25.574	15.868	1	172180	+		63920	31258	45024	45088	69164	69164					-0.0717875489413018
QQSPPHFGQQA	11	Unmodified	_QQSPPHFGQQA_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2;ENST00000518287.6_1_8:71025838-71050550:-|nuORF	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2299499511719	3	408.863388	1223.56833	-0.53218	-0.00021759	-2.4245	-0.0009913	-2.9567	-0.0012089	408.8623695530927	25.093	0.34095	25.058	24.86	25.201	-0.034395					12	7	2	0	0	0	0.024742	1	1125	1125		38.714	19.451	1	61669			63921	5408	45025	45089	69165	69165					-0.034507297902337086
QQSQNEGTPA	10	Unmodified	_QQSQNEGTPA_					0	0	0		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2421264648438	2	530.238709	1058.46287	-0.098715	-5.2342E-05	4.3	0.00228	4.2013	0.0022277	530.2408927350496	110.12	1.4041	110.13	109.79	111.2	0.0059204					101	50	3	0	0	0	1.1068	1	13948	13948		14.137	1.9303	1	137900			63922	1970	45026	45090	69166	69166					-0.06402690706499925
QQSSVSGGTM	10	Oxidation (M)	_QQSSVSGGTM(Oxidation (M))_		QQSSVSGGTM(1)		QQSSVSGGTM(65)	0	0	1			REV__ENSG00000102804|ENST00000458659|TSC22D1	REV__ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.2183532714844	2	499.216388	996.418224	-0.073445	-3.6665E-05	3.9227	0.0019583	3.8492	0.0019216	499.21823760934916	32.389	0.7966	32.152	31.867	32.664	-0.23666					51	18	4	0	0	0	0.72729	1	2230	2230		65.465	13.166	1	3192800	+		63923	21329	45027	45091	69167	69167		652			-0.08012837844182741
QQTGCLWSW	9	Unmodified	_QQTGCLWSW_					0	0	0			REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7498779296875	2	554.747659	1107.48076	-0.1635	-9.0702E-05	0.47596	0.00026404	0.31246	0.00017333	554.747778702774	73.942	0.3976	73.665	73.327	73.724	-0.2769					16	9	2	0	0	0	0.39228	1	8706	8706		66.429	0.96389	1	477040	+		63924	37442	45028	45092	69168	69168					-0.06867646985369902
QQTGCLWSW	9	Unmodified	_QQTGCLWSW_					0	0	0			REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	554.747659	1107.48076	-0.1635	-9.0702E-05	0.47596	0.00026404	0.31246	0.00017333	554.747778702774	73.942	0.3976	73.665	73.327	73.724	-0.2769	0.080888	0.00016572	NaN	66.429	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477040	+		63925	37442	45028	45092							-0.06867646985369902
QQTGCLWSW	9	Unmodified	_QQTGCLWSW_					0	0	0			REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	554.747659	1107.48076	-0.16819	-9.3303E-05	0.53114	0.00029465	0.36295	0.00020135	554.7478300496937	73.858	0.39432	73.593	73.331	73.725	-0.26479	0.0087634	0.00022694	NaN	66.429	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420500	+		63926	37442	45028	45092							-0.06867646985369902
QQTGCLWSW	9	Unmodified	_QQTGCLWSW_					0	0	0			REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	REV__RHOC|p.C20Ffs*86|1|0.12|ENSG00000155366|chr1:112703743-112703744|-/TAAAA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	554.747659	1107.48076	-0.19913	-0.00011047	0.12141	6.735E-05	-0.077722	-4.3116E-05	554.7475588940641	73.685	0.44626	73.495	73.237	73.683	-0.19027	-0.089651	-0.00022766	NaN	66.429	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404210	+		63927	37442	45028	45092							-0.06867646985369902
QQTLSSPMA	9	Unmodified	_QQTLSSPMA_					0	0	0		ENST00000437322.2_1_X:49642981-49643347:-|nuORF	ENST00000437322.2_1_X:49642981-49643347:-|nuORF	ENST00000437322.2_1_X:49642981-49643347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.7692565917969	2	481.734217	961.453881	-0.24405	-0.00011757	-2.8728	-0.0013839	-3.1168	-0.0015015	481.7326908247225	57.529	0.86812	57.351	56.886	57.754	-0.17775					59	22	4	0	0	0	0.024436	1	6271	6271		47.916	21.119	1	1233500			63928	14294	45029	45093	69169	69169					-0.028387555965423417
QQTPLHLAV	9	Unmodified	_QQTPLHLAV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.787109375	2	503.787641	1005.56073	-0.59339	-0.00029895	0.14996	7.5546E-05	-0.44344	-0.0002234	503.78766809417283	54.415	1.0401	54.415	54.043	55.083	0					80	29	4	0	0	0	0.20304	1	5935	5935		88.643	14.126	1	11352000			63929	2258	45030	45094	69170	69170					0.058171626801254206
QQTPLHLAV	9	Unmodified	_QQTPLHLAV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7867431640625	2	503.787641	1005.56073	-0.12215	-6.154E-05	-0.052238	-2.6317E-05	-0.17439	-8.7857E-05	503.78756264105124	54.543	1.1477	54.392	53.984	55.132	-0.15036					86	32	4	0	0	0	0.33184	1	5942	5942		71.378	5.4805	1	11879000			63930	2258	45030	45094	69171	69171					0.058171626801254206
QQTPLHLAV	9	Unmodified	_QQTPLHLAV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7868347167969	2	503.787641	1005.56073	0.71569	0.00036056	-1.0851	-0.00054668	-0.36944	-0.00018612	503.7870478937873	54.217	1.1421	54.315	53.94	55.083	0.098015					89	32	5	0	0	0	0.40179	2	5836	5816;5836		65.803	10.299	1	10060000			63931	2258	45030	45094	69172;69173	69173					0.058171626801254206
QQTRQAER	8	Unmodified	_QQTRQAER_					0	0	0			REV__ENSG00000184163|ENST00000330388|C1QTNF12	REV__ENSG00000184163|ENST00000330388|C1QTNF12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3036193847656	2	508.765229	1015.5159	-0.3604	-0.00018336	-3.7638	-0.0019149	-4.1242	-0.0020983	508.76317439535694	26.553	0.33497	26.553	26.365	26.7	0					13	7	2	0	0	0	0.027866	1	1382	1382		65.803	9.0821	1	55774	+		63932	27641	45031	45095	69174	69174					0.008767318667992186
QQVCYEDI	8	Unmodified	_QQVCYEDI_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1;REV__ENSG00000080824|ENST00000216281|HSP90AA1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.2183837890625	2	499.2184	996.422247	-0.60181	-0.00030043	0.33438	0.00016693	-0.26743	-0.0001335	499.2184688021102	32.3	0.86654	32.142	31.861	32.728	-0.15772					53	20	5	0	0	0	0.94517	1	2194	2194		45.952	1.8352	1	3055500	+		63933	20984;20665	45032	45096	69175	69175					-0.07610748350509766
QQVGLRRW	8	Unmodified	_QQVGLRRW_					0	0	0			REV__ENSG00000123975|ENST00000314355|CKS2	REV__ENSG00000123975|ENST00000314355|CKS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3238525390625	2	521.798875	1041.5832	-0.14672	-7.6558E-05	-1.6218	-0.00084627	-1.7686	-0.00092283	521.7979772116125	58.61	0.87694	58.61	57.946	58.823	0					43	23	2	0	0	0	0.027866	1	6641	6641		26.796	0	1	304650	+		63934	22720	45033	45097	69176	69176					0.06406806868426429
QQVGLRRW	8	Unmodified	_QQVGLRRW_					0	0	0			REV__ENSG00000123975|ENST00000314355|CKS2	REV__ENSG00000123975|ENST00000314355|CKS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.798875	1041.5832	0.071962	3.755E-05	-1.7202	-0.00089761	-1.6483	-0.00086006	521.7978471666939	58.817	0.8362	58.63	57.993	58.829	-0.18705	0.0096969	-3.4928E-05	NaN	35.201	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359880	+		63935	22720	45033	45097							0.06406806868426429
QQVQIHQI	8	Unmodified	_QQVQIHQI_					0	0	0		ENST00000604430.1_1_16:29323693-29367128:+|nuORF;nc|ENSG00000172530|Q8N9N5-3|BANP;nc|ENSG00000172530|Q8N9N5-6|BANP;nc|ENSG00000172530|Q8N9N5-2|BANP;nc|ENSG00000172530|Q8N9N5-4|BANP;nc|ENSG00000172530|Q8N9N5-5|BANP;nc|ENSG00000172530|Q8N9N5-7|BANP;nc|ENSG00000172530|Q8N9N5|BANP;ENSG00000172530|ENST00000682872|BANP	ENST00000604430.1_1_16:29323693-29367128:+|nuORF	ENST00000604430.1_1_16:29323693-29367128:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2740173339844	2	497.277441	992.540328	-0.66374	-0.00033006	0.10703	5.3226E-05	-0.5567	-0.00027684	497.27737727232324	40.206	0.5848	40.229	39.977	40.562	0.023006					42	15	4	0	0	0	0.93274	1	3458	3458		47.916	1.9434	1	2939900			63936	8286	45034	45098	69177	69177					0.043759920203456204
QQVTGLPK	8	Unmodified	_QQVTGLPK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.5229187011719	2	435.75581	869.497067	-0.17961	-7.8266E-05	2.112	0.00092033	1.9324	0.00084206	435.7557973998267	47.455	0.8473	47.358	47.008	47.856	-0.096653					47	22	3	0	0	0	0.027866	1	4715	4715		33.516	3.0119	1	476440	+		63937	22447	45035	45099	69178	69178					0.0570980224304094
QQVTGLPK	8	Unmodified	_QQVTGLPK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.75581	869.497067	-0.019346	-8.4303E-06	0.23749	0.00010349	0.21815	9.5058E-05	435.7557738555882	47.553	0.59171	47.553	47.252	47.843	0	0.077079	1.0459E-05	NaN	18.324	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359700	+		63938	22447	45035	45099							0.0570980224304094
QQVTGLPK	8	Unmodified	_QQVTGLPK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.75581	869.497067	0.1214	5.29E-05	-0.015261	-6.6502E-06	0.10614	4.625E-05	435.7557090516092	47.699	0.56175	47.546	47.265	47.827	-0.15301	0.070054	-0.00020982	NaN	18.324	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417790	+		63939	22447	45035	45099							0.0570980224304094
QQVTGLPK	8	Unmodified	_QQVTGLPK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.75581	869.497067	-0.5201	-0.00022664	1.0404	0.00045337	0.52033	0.00022674	435.7559946931742	47.482	0.52532	47.541	47.214	47.739	0.059097	0.065198	0.00071023	NaN	18.324	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409890	+		63940	22447	45035	45099							0.0570980224304094
QQVTGLPK	8	Unmodified	_QQVTGLPK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.75581	869.497067	-0.099852	-4.3511E-05	0.020217	8.8095E-06	-0.079635	-3.4701E-05	435.7557004497572	47.723	0.69402	47.447	47.118	47.812	-0.27598	-0.028187	-0.0001789	NaN	18.324	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509870	+		63941	22447	45035	45099							0.0570980224304094
QQVYASVNKIK	11	Unmodified	_QQVYASVNKIK_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.5792541503906	3	426.578588	1276.71394	0.33053	0.000141	0.70578	0.00030107	1.0363	0.00044207	426.5788493975335	36.177	1.6478	35.96	35.507	37.155	-0.21661					128	43	4	0	0	0	1.0075	1	2801	2801		25.068	0	1	5257800			63942	1126	45036	45100	69179	69179					0.08664733005934977
QQWSMGPTAM	10	Unmodified	_QQWSMGPTAM_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.7448120117188	2	568.746802	1135.47905	-0.49746	-0.00028293	-3.3342	-0.0018963	-3.8317	-0.0021792	568.7448979988617	24.725	1.4218	24.804	24.455	25.877	0.078344					71	32	3	0	0	0	1.0122	1	1082	1082		44.377	3.599	1	2385100	+		63943	21955	45037	45101	69180	69180					-0.08327024065602018
QQYRALTV	8	Unmodified	_QQYRALTV_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000176014|ENST00000317702|TUBB6;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.77197265625	2	489.771991	977.529429	0.16592	8.1263E-05	-0.85231	-0.00041744	-0.68639	-0.00033617	489.77173251983817	42.661	0.91825	42.661	42.12	43.038	0					87	25	4	0	0	0	0.71833	2	3937	3937;3949		65.803	2.4969	1	12453000		+	63944	9840;10932;8603	45038	45102	69181;69182	69181					0.039765896460380645
QQYRALTV	8	Unmodified	_QQYRALTV_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000415481.1_1_1:809210-809726:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;TUBB8|p.L361*|1|0.05|ENSG00000261456|chr10:47312-47312|C/-|frameshift_variant;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000176014|ENST00000317702|TUBB6;ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.7718811035156	2	489.771991	977.529429	-0.027489	-1.3463E-05	-0.63279	-0.00030992	-0.66028	-0.00032339	489.7718343249997	42.854	1.4389	42.715	41.882	43.321	-0.13929					105	40	4	0	0	0	0.71833	1	3939	3939		65.803	5.5092	1	12609000		+	63945	9840;10932;8603	45038	45102	69183	69183					0.039765896460380645
QRALLMGRRV	10	Unmodified	_QRALLMGRRV_					0	0	0			REV__ENSG00000113048|ENST00000261413|MRPS27	REV__ENSG00000113048|ENST00000261413|MRPS27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	600.3588256835938	2	600.361316	1198.70808	0.71559	0.00042961	-3.3509	-0.0020118	-2.6354	-0.0015822	600.3589292043572	17.864	0.54642	17.71	17.458	18.004	-0.15403					23	10	3	0	0	0	1.0545	1	236	236		34.173	0	1	67501	+		63946	22038	45039	45103	69184	69184					0.1166735601327673
QRALLMGRRV	10	Unmodified	_QRALLMGRRV_					0	0	0			REV__ENSG00000113048|ENST00000261413|MRPS27	REV__ENSG00000113048|ENST00000261413|MRPS27	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	600.361316	1198.70808	0.71559	0.00042961	-3.3509	-0.0020118	-2.6354	-0.0015822	600.3589292043572	17.864	0.54642	17.71	17.458	18.004	-0.15403	-0.0015737	0.00027762	NaN	34.173	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67501	+		63947	22038	45039	45103							0.1166735601327673
QRALLMGRRV	10	Unmodified	_QRALLMGRRV_					0	0	0			REV__ENSG00000113048|ENST00000261413|MRPS27	REV__ENSG00000113048|ENST00000261413|MRPS27	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	600.361316	1198.70808	-0.59495	-0.00035719	-2.5039	-0.0015032	-3.0988	-0.0018604	600.3597955350917	17.902	0.29876	17.696	17.564	17.863	-0.20669	-0.015682	0.0012947	NaN	34.173	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64320	+		63948	22038	45039	45103							0.1166735601327673
QRALLMGRRV	10	Unmodified	_QRALLMGRRV_					0	0	0			REV__ENSG00000113048|ENST00000261413|MRPS27	REV__ENSG00000113048|ENST00000261413|MRPS27	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	600.361316	1198.70808	3.71	0.0022273	-6.6823	-0.0040118	-2.9723	-0.0017845	600.3573354541381	17.971	0.34711	17.729	17.577	17.924	-0.24256	0.017256	-0.0037224	NaN	34.173	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42802	+		63949	22038	45039	45103							0.1166735601327673
QRARRPVP	8	Unmodified	_QRARRPVP_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2717590332031	2	490.299042	978.583531	0.56186	0.00027548	2.3553	0.0011548	2.9171	0.0014303	490.3001393372745	63.466	0.64873	63.466	63.161	63.81	0					28	17	2	0	0	0	0.027866	1	7381	7381		33.516	6.7195	1	443430			63950	8191	45040	45104	69185	69185					0.09338226588272391
QRCQHCTNGL	10	Unmodified	_QRCQHCTNGL_					0	0	0			REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.25927734375	2	580.258399	1158.50225	-0.21908	-0.00012712	2.6092	0.001514	2.3901	0.0013869	580.2597392805567	27.657	0.72605	27.415	27.119	27.845	-0.24217					37	16	3	0	0	0	1.0002	1	1561	1561		45.972	3.108	1	874140	+		63951	25786	45041	45105	69186	69186					-0.07066585228290023
QRDFTAAF	8	Unmodified	_QRDFTAAF_					0	0	0		ENSG00000135077|ENST00000307851|HAVCR2	ENSG00000135077|ENST00000307851|HAVCR2	ENSG00000135077|ENST00000307851|HAVCR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.2355651855469	2	478.235242	954.45593	-0.46042	-0.00022019	0.23451	0.00011215	-0.22591	-0.00010804	478.23528966741213	45.102	0.9926	44.953	44.422	45.415	-0.1488					86	28	5	0	0	0	0.65272	1	4334	4334		71.378	1.7503	1	4762800			63952	4856	45042	45106	69187	69187					-0.023119587964288257
QRDLEFLESC	10	Unmodified	_QRDLEFLESC_					0	0	0		ENST00000234111.8_1_2:10585281-10588269:-|nuORF;ENST00000405333.5_1_2:10585281-10587658:-|nuORF	ENST00000234111.8_1_2:10585281-10588269:-|nuORF	ENST00000234111.8_1_2:10585281-10588269:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2691650390625	3	413.860656	1238.56014	-0.66634	-0.00027577	-4.0259	-0.0016661	-4.6922	-0.0019419	414.1939790776559	28.516	0.42328	28.347	28.131	28.554	-0.16897					12	9	2	0	0	0	0.03519	1	1653	1653		40.058	21.527	1	57671			63953	11249	45043	45107	69188	69188					-0.0496004482185981
QRERQQVVR	9	Unmodified	_QRERQQVVR_					0	0	0		ENST00000341394.8_1_11:34073366-34074044:+|nuORF;ENST00000532820.5_1_11:34073912-34074044:+|nuORF	ENST00000341394.8_1_11:34073366-34074044:+|nuORF	ENST00000341394.8_1_11:34073366-34074044:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.2304992675781	3	400.230294	1197.66905	0.83763	0.00033525	-1.2659	-0.00050667	-0.42831	-0.00017142	400.22992138935825	22.077	1.5417	22.077	21.537	23.079	0					111	32	5	0	0	0	0.72494	1	770	770		44.377	2.0391	1	7007000			63954	12493	45044	45108	69189	69189					0.0781234698326898
QRFRVCVSK	9	Unmodified	_QRFRVCVSK_					0	0	0		ENST00000559668.5_1_15:84870350-84870740:-|nuORF	ENST00000559668.5_1_15:84870350-84870740:-|nuORF	ENST00000559668.5_1_15:84870350-84870740:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.7808837890625	2	561.813667	1121.61278	0.21784	0.00012238	4.2752	0.0024019	4.4931	0.0025243	561.815826289678	22.815	0.69985	22.626	22.327	23.027	-0.18894					22	14	2	0	0	0	0.024541	1	896	896		34.173	12.487	1	28424			63955	16785	45045	45109	69190	69190					0.056840028222495675
QRFRVCVSK	9	Unmodified	_QRFRVCVSK_					0	0	0		ENST00000559668.5_1_15:84870350-84870740:-|nuORF	ENST00000559668.5_1_15:84870350-84870740:-|nuORF	ENST00000559668.5_1_15:84870350-84870740:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.813667	1121.61278	-0.44891	-0.0002522	6.0999	0.003427	5.651	0.0031748	561.817070457877	22.946	0.50729	22.761	22.554	23.061	-0.18539	0.00011256	0.001243	NaN	40.778	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37655			63956	16785	45045	45109							0.056840028222495675
QRFRVCVSK	9	Unmodified	_QRFRVCVSK_					0	0	0		ENST00000559668.5_1_15:84870350-84870740:-|nuORF	ENST00000559668.5_1_15:84870350-84870740:-|nuORF	ENST00000559668.5_1_15:84870350-84870740:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	561.813667	1121.61278	0.97329	0.00054681	4.0444	0.0022722	5.0177	0.002819	561.8155108991451	23.087	0.46254	22.896	22.572	23.034	-0.19117	0.13504	-0.0010666	NaN	40.778	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36414			63957	16785	45045	45109							0.056840028222495675
QRHLTVGE	8	Unmodified	_QRHLTVGE_					0	0	0		nc|ENSG00000198719|O00548-2|DLL1;ENSG00000198719|ENST00000366756|DLL1	nc|ENSG00000198719|O00548-2|DLL1	nc|ENSG00000198719|O00548-2|DLL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.78814697265625	2	470.253966	938.493378	0.38235	0.0001798	0.58372	0.00027449	0.96607	0.0004543	470.2538210819726	23.72	0.74787	23.797	23.434	24.182	0.076241					51	16	6	0	0	0	0.027866	1	950	950		25.574	3.6142	1	1153000			63958	10178	45046	45110	69191	69191					0.02167132469196531
QRHNHQVKTV	10	Unmodified	_QRHNHQVKTV_					0	0	0		ENST00000476798.1_1_6:108041877-108053271:-|nuORF	ENST00000476798.1_1_6:108041877-108053271:-|nuORF	ENST00000476798.1_1_6:108041877-108053271:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.23162841796875	3	416.230294	1245.66905	0.30325	0.00012622	2.7347	0.0011383	3.038	0.0012645	416.23147739627103	21.058	1.9295	20.863	20.385	22.315	-0.19577					110	39	6	0	0	0	1.1081	1	594	594		31.634	4.8846	1	2798600			63959	15097	45047	45111	69192	69192					0.056043469832502524
QRHPHAGNRE	10	Unmodified	_QRHPHAGNRE_					0	0	0		ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.2044982910156	3	401.202626	1200.58605	4.3988	0.0017648	0.7285	0.00029228	5.1273	0.0020571	401.2028775463709	17.405	0.34763	17.155	16.974	17.322	-0.25049					17	6	4	0	0	0	1.1244	1	148	148		23.378	4.1152	1	91996			63960	9774	45048	45112	69193	69193					-0.006219697447249928
QRICLLKIY	9	Unmodified	_QRICLLKIY_					0	0	0			REV__ENST00000393415.7_1_12:69229612-69230524:+|nuORF	REV__ENST00000393415.7_1_12:69229612-69230524:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.3456420898438	2	575.344269	1148.67399	0.8633	0.00049669	1.2952	0.00074518	2.1585	0.0012419	575.3449012149558	97.098	1.2775	96.961	96.613	97.89	-0.13671					99	28	5	0	0	0	0.90698	1	11968	11968		31.955	0	1	3730600	+		63961	31646	45049	45113	69194	69194					0.105595148016846
QRIHTGENL	9	Unmodified	_QRIHTGENL_					0	0	0		ZNF268|p.P359L|1|0.5|ENSG00000090612|chr12:133202762-133202762|C/T|missense_variant	ZNF268|p.P359L|1|0.5|ENSG00000090612|chr12:133202762-133202762|C/T|missense_variant	ZNF268|p.P359L|1|0.5|ENSG00000090612|chr12:133202762-133202762|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2833862304688	2	534.283254	1066.55196	0.14511	7.7529E-05	1.9432	0.0010382	2.0884	0.0011158	534.2843186877622	106.34	0.98719	106.18	105.77	106.76	-0.16132					86	45	3	0	0	0	0.72494	1	13217	13217		44.377	3.599	1	230390			63962	38183	45050	45114	69195	69195					0.021341890436588073
QRKAPAPQ	8	Unmodified	_QRKAPAPQ_					0	0	0		nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	nc|ENSG00000154767|Q01831-2|XPC	nc|ENSG00000154767|Q01831-2|XPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2584228515625	2	448.259051	894.503549	0.41659	0.00018674	-0.5403	-0.00024219	-0.12371	-5.5455E-05	448.25867764123615	89.029	1.3807	89.029	88.555	89.936	0					85	32	4	0	0	0	1.043	1	11272	11272		30.504	3.7075	1	7392500			63963	6434	45051	45115	69196	69196					0.05207740194418875
QRKAPPAQ	8	Unmodified	_QRKAPPAQ_					0	0	0			REV__sp|P03199|BLLF2_EBVB9UncharacterizedproteinBLLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF2PE=3SV=1	REV__sp|P03199|BLLF2_EBVB9UncharacterizedproteinBLLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF2PE=3SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.2587585449219	2	448.259051	894.503549	0.35148	0.00015756	-0.50826	-0.00022783	-0.15678	-7.0278E-05	448.2586890631354	89.096	1.4611	89.112	88.623	90.084	0.015907					87	34	4	0	0	0	1.043	1	11136	11136		30.504	1.3541	1	7395300	+		63964	37535	45052	45116	69197	69197					0.05207740194418875
QRKTLPGN	8	Unmodified	_QRKTLPGN_					0	0	0		ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.26422119140625	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	1.043	1	9670	9670		30.504	1.3541	1	4140300			63965	13498	45053	45117	69198	69198					0.05435722848869773
QRLAHIRS	8	Unmodified	_QRLAHIRS_					0	0	0			REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13	REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.81207275390625	2	490.79105	979.567546	0.010907	5.3529E-06	1.5835	0.00077718	1.5944	0.00078253	490.79183679800116	25.599	0.29193	25.428	25.2	25.492	-0.17151					9	6	2	0	0	0	0.027866	1	1207	1207		38.806	6.8513	1	55273	+		63966	23355	45054	45118	69199	69199					0.07694520351367373
QRLEPGRN	8	Unmodified	_QRLEPGRN_					0	0	0			REV__ENST00000380237.5_1_11:5291206-5291239:-|nuORF	REV__ENST00000380237.5_1_11:5291206-5291239:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.26641845703125	2	485.264865	968.515176	0.54572	0.00026482	2.1824	0.0010591	2.7281	0.0013239	485.2658146829311	68.204	1.5527	67.949	67.538	69.091	-0.25516					87	37	4	0	0	0	0.94517	1	7895	7895		45.952	1.8352	1	3858000	+		63967	31468	45055	45119	69200	69200					0.029659372177547993
QRLEQEVKWEL	11	Unmodified	_QRLEQEVKWEL_					0	0	0		ENST00000367079.3_1_1:207252363-207252585:+|nuORF	ENST00000367079.3_1_1:207252363-207252585:+|nuORF	ENST00000367079.3_1_1:207252363-207252585:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7768249511719	3	486.596419	1456.76743	-1.0374	-0.00050481	3.6954	0.0017982	2.658	0.0012934	486.5980259677111	29.363	0.52043	29.442	29.242	29.763	0.078346					14	12	2	0	0	0	0.024805	1	1768	1768		31.068	5.1764	1	94916			63968	12837	45056	45120	69201	69201					0.057314857177971135
QRLGAALH	8	Unmodified	_QRLGAALH_					0	0	0		ENSG00000204396|ENST00000375688|VWA7;nc|ENSG00000204396|Q9Y334-2|VWA7;VWA7|p.Y468Ifs*107|1|0.19|ENSG00000204396|chr6:31769119-31769120|-/T|frameshift_variant	ENSG00000204396|ENST00000375688|VWA7	ENSG00000204396|ENST00000375688|VWA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2568359375	2	433.253769	864.492984	0.57532	0.00024926	0.37934	0.00016435	0.95466	0.00041361	433.2544424368744	97.607	0.57011	97.616	97.326	97.896	0.0089111					30	12	3	0	0	0	1.0472	1	12427	12427		29.842	1.5873	1	304310			63969	10342	45057	45121	69202	69202					0.05531757539984028
QRLGKTIHY	9	Unmodified	_QRLGKTIHY_					0	0	0		ENST00000554254.1_1_14:62183710-62217691:-|nuORF	ENST00000554254.1_1_14:62183710-62217691:-|nuORF	ENST00000554254.1_1_14:62183710-62217691:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2100830078125	2	558.31964	1114.62473	-0.31931	-0.00017828	-3.8927	-0.0021734	-4.212	-0.0023516	558.8186288098963	35.33	0.34866	35.114	34.987	35.336	-0.21555					13	8	2	0	0	0	0.024263	1	2670	2670		71.296	21.271	1	82134			63970	16653	45058	45122	69203	69203					0.0719994283711003
QRLHLPPV	8	Unmodified	_QRLHLPPV_					0	0	0		ENSG00000163956|ENST00000650182|LRPAP1;ENST00000509198.1_1_4:3521942-3534139:-|nuORF	ENSG00000163956|ENST00000650182|LRPAP1	ENSG00000163956|ENST00000650182|LRPAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.26202392578125	2	480.292894	958.571235	0.1477	7.0938E-05	-1.8272	-0.00087757	-1.6795	-0.00080664	480.2919044848882	74.48	0.4361	74.217	74.01	74.446	-0.26325					12	9	2	0	0	0	0.027866	1	8768	8768		62.978	27.36	1	122080			63971	7179	45059	45123	69204	69204					0.09029190125238529
QRLILVKVLRP	11	Unmodified	_QRLILVKVLRP_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.6355285644531	3	445.638001	1333.89217	-0.52599	-0.0002344	-3.814	-0.0016997	-4.34	-0.0019341	445.6361772627151	40.212	1.7286	40.062	39.629	41.358	-0.1497					166	45	5	0	0	0	1.0788	1	3494	3494		17.167	4.2093	1	4197600			63972	9482	45060	45124	69205	69205					0.23858447715633702
QRLKQVSSI	9	Unmodified	_QRLKQVSSI_					0	0	0			REV__ENSG00000164296|ENST00000296736|TIGD6	REV__ENSG00000164296|ENST00000296736|TIGD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8193359375	2	529.819473	1057.62439	0.88051	0.00046651	-1.4719	-0.00077982	-0.59135	-0.00031331	529.8187423488521	19.845	1.6257	19.612	19.226	20.851	-0.23345					80	32	5	0	0	0	0.87448	1	475	475		34.173	0	1	4033900	+		63973	25731	45061	45125	69206	69206					0.09788523117231307
QRLLPSEI	8	Unmodified	_QRLLPSEI_					0	0	0		ENST00000525006.1_1_11:65633330-65634797:+|nuORF	ENST00000525006.1_1_11:65633330-65634797:+|nuORF	ENST00000525006.1_1_11:65633330-65634797:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.281982421875	2	478.282192	954.549831	0.072498	3.4674E-05	0.093951	4.4935E-05	0.16645	7.9609E-05	478.2821275331892	50.346	1.2529	50.427	50.117	51.369	0.08099					52	35	3	0	0	0	0.77775	1	5198	5198		60.972	0	1	5498200			63974	16076	45062	45126	69207	69207					0.07073760305854648
QRLPGNDI	8	Unmodified	_QRLPGNDI_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7663269042969	2	456.748516	911.482479	-0.76504	-0.00034943	1.4206	0.00064886	0.65558	0.00029944	456.7508523619318	43.872	0.38841	43.727	43.569	43.958	-0.14471					12	10	2	0	0	0	0.027866	1	4153	4153		31.955	8.9124	1	134820			63975	6342	45063	45127	69208	69208					0.023197300949163946
QRLQSHSLTF	10	Unmodified	_QRLQSHSLTF_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2180480957031	3	406.219283	1215.63602	-0.83224	-0.00033807	-2.3148	-0.00094033	-3.1471	-0.0012784	406.21820590291793	46.245	0.93177	46.043	45.669	46.6	-0.20226					74	25	5	0	0	0	1.1237	1	4433	4433		29.551	2.801	1	2050000	+		63976	27576	45064	45128	69209	69209					0.036827201405458254
QRLRMVWRRKR	11	Unmodified	_QRLRMVWRRKR_					0	0	0		ENST00000285689.7_2_5:125759302-125805397:+|nuORF;ENST00000544396.5_2_5:125759302-125807964:+|nuORF;nc|ENSG00000155324|Q96HH9-2|GRAMD2B	ENST00000285689.7_2_5:125759302-125805397:+|nuORF	ENST00000285689.7_2_5:125759302-125805397:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.778076171875	3	528.987922	1583.94194	-0.51346	-0.00027161	3.5525	0.0018792	3.0391	0.0016076	529.3241520210958	17.262	0.25314	17.056	16.913	17.166	-0.20669					9	4	3	0	0	0	0.024902	1	138	138		3.4087	0.19739	1	20651			63977	11753	45065	45129	69210	69210					0.17332252172604967
QRLSPVPS	8	Unmodified	_QRLSPVPS_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7882080078125	2	442.253434	882.492316	0.52896	0.00023393	-0.31618	-0.00013983	0.21278	9.4104E-05	442.2531874973981	43.308	0.43919	43.339	43.046	43.486	0.030827					13	11	2	0	0	0	0.027866	1	3952	3952		40.573	6.4001	1	114050	+		63978	20753	45066	45130	69211	69211					0.046369181002773985
QRLTLRGP	8	Unmodified	_QRLTLRGP_					0	0	0			REV__ENST00000496634.2_1_11:62341216-62341447:-|nuORF	REV__ENST00000496634.2_1_11:62341216-62341447:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2724304199219	2	470.787976	939.561398	0.93436	0.00043989	1.3579	0.00063929	2.2923	0.0010792	470.78723634056	91.741	0.76089	91.75	91.276	92.037	0.0094147					23	17	2	0	0	0	0.027866	1	11498	11498		55.504	26.355	1	56453	+		63979	33830	45067	45131	69212	69212					0.08920002119862147
QRLVIYEGY	9	Unmodified	_QRLVIYEGY_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2273559570312	2	570.806031	1139.59751	-0.5492	-0.00031349	1.6148	0.00092174	1.0656	0.00060826	570.8078851280201	38.768	0.24209	38.546	38.375	38.617	-0.22149					8	5	2	0	0	0	0.024495	1	3228	3228		42.396	6.7778	1	44115	+		63980	30781	45068	45132	69213	69213					0.0332941450603812
QRLVIYEGY	9	Unmodified	_QRLVIYEGY_					0	0	0			REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	REV__ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	570.806031	1139.59751	-1.0703	-0.00061093	1.7469	0.00099717	0.67665	0.00038623	571.308416109805	38.674	0.19717	38.5	38.348	38.545	-0.17382	-0.02281	7.8771E-05	NaN	42.396	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48169	+		63981	30781	45068	45132							0.0332941450603812
QRLWCNGAQ	9	Carbamidomethyl (C)	_QRLWC(Carbamidomethyl (C))NGAQ_	QRLWC(1)NGAQ		QRLWC(63)NGAQ		0	1	0			REV__nc|ENSG00000134363|P19883-2|FST	REV__nc|ENSG00000134363|P19883-2|FST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.7684936523438	2	566.769457	1131.52436	0.14448	8.1888E-05	-1.4407	-0.00081657	-1.2963	-0.00073468	566.7685368534005	17.918	0.4921	17.775	17.552	18.044	-0.14278					15	9	2	0	0	0	0.43973	1	209	209		63.306	15.649	1	180180	+		63982	23444	45069	45133	69214	69214	307				-0.0361403748822795
QRNWGLAIP	9	Unmodified	_QRNWGLAIP_					0	0	0		ENST00000368457.2_1_1:154930749-154930905:-|nuORF	ENST00000368457.2_1_1:154930749-154930905:-|nuORF	ENST00000368457.2_1_1:154930749-154930905:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7640380859375	2	527.793258	1053.57196	-0.3256	-0.00017185	3.4582	0.0018252	3.1326	0.0016533	527.7950178205338	62.442	0.31403	62.183	61.936	62.25	-0.25824					12	7	2	0	0	0	0.024466	1	7007	7007		42.474	13.325	1	146710			63983	12894	45070	45134	69215	69215					0.04731984774275588
QRPASSGGAH	10	Unmodified	_QRPASSGGAH_					0	0	0		ENSG00000177272|ENST00000369769|KCNA3	ENSG00000177272|ENST00000369769|KCNA3	ENSG00000177272|ENST00000369769|KCNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.77911376953125	2	484.238847	966.463141	-0.51456	-0.00024917	-4.0018	-0.0019378	-4.5163	-0.002187	484.236847345035	38.767	0.43882	38.669	38.475	38.914	-0.098751					16	11	2	0	0	0	0.03519	1	3279	3279		35.618	6.4687	1	87419			63984	8723	45071	45135	69216	69216					-0.0214322619599443
QRPKASLN	8	Unmodified	_QRPKASLN_					0	0	0		HNRNPL|p.A247P|1|0.23|ENSG00000104824|chr19:38844076-38844076|C/G|missense_variant	HNRNPL|p.A247P|1|0.23|ENSG00000104824|chr19:38844076-38844076|C/G|missense_variant	HNRNPL|p.A247P|1|0.23|ENSG00000104824|chr19:38844076-38844076|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2644958496094	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.93274	1	10138	10138		47.916	3.7988	1	2903100			63985	17742	45072	45136	69217	69217					0.05435722848858404
QRPLSTPL	8	Unmodified	_QRPLSTPL_					0	0	0			REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2693176269531	2	456.269084	910.523616	-0.49395	-0.00022538	-0.074134	-3.3825E-05	-0.56809	-0.0002592	456.26906969877064	45.2	1.5497	45.051	44.697	46.247	-0.1488					108	44	5	0	0	0	0.33369	1	4390	4390		106.42	5.2036	1	26120000	+		63986	30913	45073	45137	69218	69218					0.06477491134376123
QRPLSTPL	8	Unmodified	_QRPLSTPL_					0	0	0			REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2694091796875	2	456.269084	910.523616	0.05305	2.4205E-05	-0.70287	-0.0003207	-0.64982	-0.00029649	456.26878214586753	45.083	1.677	45.127	44.756	46.433	0.043877					102	48	4	0	0	0	0.24207	1	4314	4314		133.47	3.7864	1	26588000	+		63987	30913	45073	45137	69219	69219					0.06477491134376123
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2871398925781	2	462.287277	922.560001	-0.32942	-0.00015229	-0.2471	-0.00011423	-0.57652	-0.00026652	462.28716897679226	52.771	1.639	52.771	52.16	53.799	0					128	43	5	0	0	0	0.33369	7	5659	5637;5647;5659;5671;5683;5696;5709		106.42	22.711	1	29850000			63988	4508	45074	45138	69220;69221;69222;69223;69224;69225;69226	69222					0.09562368031083679
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2873229980469	2	462.287277	922.560001	0.090912	4.2028E-05	-0.64457	-0.00029798	-0.55365	-0.00025595	462.28699225832906	52.883	1.6538	52.736	52.057	53.711	-0.14724					125	43	5	0	0	0	0.37125	7	5635	5627;5635;5647;5659;5671;5683;5696		101.21	14.067	1	26559000			63989	4508	45074	45138	69227;69228;69229;69230;69231;69232;69233	69228					0.09562368031083679
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM	ENSG00000131263|ENST00000332687|RLIM	ENSG00000131263|ENST00000332687|RLIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.2867736816406	2	462.287277	922.560001	0.70232	0.00032467	-1.2636	-0.00058415	-0.56129	-0.00025948	462.28671757820103	52.598	1.4809	52.69	52.321	53.802	0.091938					121	39	5	0	0	0	0.37125	6	5554	5544;5554;5566;5578;5590;5602		101.21	9.0209	1	32831000			63990	4508	45074	45138	69234;69235;69236;69237;69238;69239	69235					0.09562368031083679
QRPRWRSVSLL	11	Unmodified	_QRPRWRSVSLL_					0	0	0		ENST00000458670.1_1_20:1755302-1759483:-|nuORF;ENST00000418979.2_1_20:1754119-1759483:-|nuORF	ENST00000458670.1_1_20:1755302-1759483:-|nuORF	ENST00000458670.1_1_20:1755302-1759483:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.6080322265625	3	466.608993	1396.80515	0.19292	9.0016E-05	-2.0322	-0.00094822	-1.8392	-0.00085821	466.6079363438645	99.826	0.91731	99.837	99.179	100.1	0.010109					66	22	4	0	0	0	1.0499	1	12712	12712		25.126	4.811	1	854030			63991	13948	45075	45139	69240	69240					0.12262041493931974
QRPRWRSVSLL	11	Unmodified	_QRPRWRSVSLL_					0	0	0		ENST00000458670.1_1_20:1755302-1759483:-|nuORF;ENST00000418979.2_1_20:1754119-1759483:-|nuORF	ENST00000458670.1_1_20:1755302-1759483:-|nuORF	ENST00000458670.1_1_20:1755302-1759483:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	466.6075134277344	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.42	1	100.43	99.931	100.93	0.010117								0	0	0	1.4277	1	12812	12812		19.263	1.4295	1				63992	13948	45075	45139	69241	69241					0.12262041493931974
QRPRWRSVSLL	11	Unmodified	_QRPRWRSVSLL_					0	0	0		ENST00000458670.1_1_20:1755302-1759483:-|nuORF;ENST00000418979.2_1_20:1754119-1759483:-|nuORF	ENST00000458670.1_1_20:1755302-1759483:-|nuORF	ENST00000458670.1_1_20:1755302-1759483:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	466.60748291015625	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.83	1	100.84	100.34	101.34	0.0090332								0	0	0	1.5172	1	12867	12867		14.694	1.7362	1				63993	13948	45075	45139	69242	69242					0.12262041493931974
QRPSVVVSP	9	Unmodified	_QRPSVVVSP_					0	0	0		nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7795715332031	2	484.779816	967.545079	-0.55184	-0.00026752	-0.48793	-0.00023654	-1.0398	-0.00050406	484.77954223867596	38.783	1.0132	38.684	38.398	39.411	-0.098755					57	27	3	0	0	0	0.6504	1	3293	3293		49.442	1.7842	1	5665000			63994	9786	45076	45140	69243	69243					0.060008761631024754
QRQNIQDL	8	Unmodified	_QRQNIQDL_					0	0	0			REV__nc|ENSG00000111679|P29350-2|PTPN6	REV__nc|ENSG00000111679|P29350-2|PTPN6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.76971435546875	2	507.76998	1013.52541	-0.95924	-0.00048707	-0.12856	-6.5281E-05	-1.0878	-0.00055235	507.7701333292522	36.355	1.5299	36.355	36.029	37.559	0					122	41	5	0	0	0	0.20995	1	2873	2873		138.83	4.0148	1	15180000	+		63995	21938	45077	45141	69244	69244					0.019185001523283063
QRQRARTRGRR	11	Unmodified	_QRQRARTRGRR_					0	0	0		ENST00000334983.9_1_3:32433340-32483402:+|nuORF	ENST00000334983.9_1_3:32433340-32483402:+|nuORF	ENST00000334983.9_1_3:32433340-32483402:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.9546813964844	3	480.954157	1439.84064	2.3373	0.0011242	-0.69684	-0.00033515	1.6405	0.000789	480.95376222073406	19.529	0.39061	19.595	19.438	19.829	0.066195					19	7	3	0	0	0	1.096	1	392	392		12.433	0.97822	1	102720			63996	12387	45078	45142	69245	69245					0.13831516794266463
QRREGQERPRR	11	Unmodified	_QRREGQERPRR_					0	0	0			REV__ENST00000497136.6_1_10:122665818-122665878:+|nuORF	REV__ENST00000497136.6_1_10:122665818-122665878:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.802490234375	3	489.938173	1466.79269	0.85376	0.00041829	-3.3605	-0.0016464	-2.5068	-0.0012282	490.27072644510065	17.557	0.29798	17.403	17.209	17.507	-0.15403					12	5	3	0	0	0	0.024869	1	182	182		14.694	5.0475	1	23140	+		63997	33844	45079	45143	69246	69246					0.07796398083587519
QRRGVPSL	8	Unmodified	_QRRGVPSL_					0	0	0			REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7721252441406	2	456.772326	911.530098	0.66934	0.00030574	-0.96876	-0.0004425	-0.29943	-0.00013677	456.7717653095696	89.004	2.3631	89.004	87.651	90.015	0					120	56	4	0	0	0	1.0516	1	11224	11224		29.15	0	1	3840100	+		63998	36696	45080	45144	69247	69247					0.07079429085752054
QRRHFIIQ	8	Unmodified	_QRRHFIIQ_					0	0	0		nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000151422|P16591-2|FER;FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant;ENSG00000151422|ENST00000281092|FER;ENST00000505323.1_1_5:108260361-108380497:+|nuORF	nc|ENSG00000151422|P16591-3|FER	nc|ENSG00000151422|P16591-3|FER	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.319091796875	2	549.319974	1096.6254	-0.16306	-8.9571E-05	-3.6459	-0.0020028	-3.809	-0.0020924	549.3178505980146	99.7	0.66833	99.695	99.343	100.01	-0.0050812					40	15	4	0	0	0	1.0574	1	12661	12661		26.796	4.2164	1	375560			63999	6200	45081	45145	69248	69248					0.08094782276816659
QRRHRNSTT	9	Unmodified	_QRRHRNSTT_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3092651367188	2	578.308126	1154.6017	0.23071	0.00013342	3.7092	0.0021451	3.9399	0.0022785	578.3102572226194	108.84	0.23425	108.69	108.6	108.83	-0.15141					22	11	2	0	0	0	0.98462	1	13422	13422		23.523	0.48021	1	1774900	+		64000	22693	45082	45146	69249	69249					0.03058316772330727
QRRIKLGF	8	Unmodified	_QRRIKLGF_					0	0	0		POU2F1-CNTNAP3|2|fusion;POU2F1-CNTNAP3|3|fusion;POU2F1-CNTNAP3|1|fusion;nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1;ENST00000559648.1_1_1:167358914-167365774:+|nuORF;ENST00000533620.5_1_11:120169092-120189098:+|nuORF;nc|ENSG00000137709|Q9UKI9-3|POU2F3;ENSG00000137709|ENST00000543440|POU2F3;nc|ENSG00000137709|Q9UKI9-2|POU2F3;ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3;nc|ENSG00000028277|P09086-4|POU2F2;nc|ENSG00000028277|P09086-3|POU2F2;nc|ENSG00000028277|P09086-2|POU2F2;nc|ENSG00000028277|P09086|POU2F2;nc|ENSG00000028277|P09086-5|POU2F2;ENSG00000028277|ENST00000692977|POU2F2	POU2F1-CNTNAP3|2|fusion;ENSG00000185668|ENST00000373012|POU3F1;ENSG00000198914|ENST00000361360|POU3F3;nc|ENSG00000028277|P09086-4|POU2F2	POU2F1-CNTNAP3|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2774963378906	2	509.319443	1016.62433	-0.58499	-0.00029795	-4.3393	-0.0022101	-4.9243	-0.0025081	509.318261983176	35.466	0.20051	35.254	35.154	35.354	-0.21246					6	4	2	0	0	0	0.027866	1	2685	2685		28.254	15.295	1	29366			64001	18981;9462;10247;1003	45083	45147	69250	69250					0.11668567907884153
QRRKKRPP	8	Unmodified	_QRRKKRPP_					0	0	0			REV__nc|ENSG00000171792|Q9BSD3-2|RHNO1	REV__nc|ENSG00000171792|Q9BSD3-2|RHNO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.34033203125	2	533.341241	1064.66793	-0.41683	-0.00022231	-2.0764	-0.0011075	-2.4933	-0.0013298	533.3399660774493	98.104	0.8865	97.939	97.578	98.465	-0.16521					55	21	3	0	0	0	1.0574	1	12135	12135		26.796	0	1	925780	+		64002	26599	45084	45148	69251	69251					0.1381817740502811
QRRKSGLVSF	10	Unmodified	_QRRKSGLVSF_					0	0	0		ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3427124023438	2	589.343646	1176.67274	-1.6034	-0.00094497	0.25779	0.00015193	-1.3456	-0.00079304	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.1286	1	11163	11163		25.574	1.0549	1	5827400			64003	8198	45085	45149	69252	69252					0.09147016757128767
QRRMRRGP	8	Unmodified	_QRRMRRGP_					0	0	0			REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	REV__ENST00000610086.1_1_7:86954707-86970752:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7626953125	2	528.801426	1055.5883	-0.25837	-0.00013663	0.25169	0.00013309	-0.0066844	-3.5347E-06	528.8034939355939	99.79	0.77846	99.8	99.09	99.868	0.010117					18	17	2	0	0	0	0.027866	1	12667	12667		28.254	0	1	72767	+		64004	35994	45086	45150	69253	69253					0.06272787459397478
QRRQTLRPLW	10	Unmodified	_QRRQTLRPLW_					0	0	0			REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.93292236328125	3	451.933588	1352.77894	0.40681	0.00018385	-2.4196	-0.0010935	-2.0128	-0.00090966	451.93241469583455	98.661	2.0539	98.671	97.815	99.869	0.010239					182	47	5	0	0	0	1.118	1	12684	12684		20.03	1.4994	1	1634100	+		64005	31809	45087	45151	69254	69254					0.11665772322453449
QRRQTLRPLW	10	Unmodified	_QRRQTLRPLW_					0	0	0			REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.9327697753906	3	451.933588	1352.77894	0.64988	0.0002937	-2.7416	-0.001239	-2.0917	-0.00094533	451.93228283212176	98.767	1.9693	98.763	97.93	99.899	-0.0038834					182	45	5	0	0	0	1.1295	1	12599	12599		26.063	0.9956	1	1384500	+		64006	31809	45087	45151	69255	69255					0.11665772322453449
QRRQTLRPLW	10	Unmodified	_QRRQTLRPLW_					0	0	0			REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	REV__ENST00000398808.3_1_11:61038963-61040779:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9327087402344	3	451.933588	1352.77894	-0.033263	-1.5033E-05	-2.0752	-0.00093784	-2.1084	-0.00095287	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.1211	1	12223	12223		21.686	3.8526	1	1141700	+		64007	31809	45087	45151	69256	69256					0.11665772322453449
QRRRFREVKLW	11	Unmodified	_QRRRFREVKLW_					0	0	0		chr10:5080901-5096410|244|29.55|0.88|5.07|+|1|AKR1C3,AKR1C3|2	chr10:5080901-5096410|244|29.55|0.88|5.07|+|1|AKR1C3,AKR1C3|2	chr10:5080901-5096410|244|29.55|0.88|5.07|+|1|AKR1C3,AKR1C3|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.8302612304688	3	525.311059	1572.91135	1.1745	0.00061698	-2.1072	-0.0011069	-0.93271	-0.00048996	525.3096452457182	17.268	0.30217	17.114	16.957	17.259	-0.15403					14	5	4	0	0	0	0.024836	1	161	161		14.779	11.37	1	41564			64008	303	45088	45152	69257	69257					0.1478079705923392
QRRRFREVKLW	11	Unmodified	_QRRRFREVKLW_					0	0	0		chr10:5080901-5096410|244|29.55|0.88|5.07|+|1|AKR1C3,AKR1C3|2	chr10:5080901-5096410|244|29.55|0.88|5.07|+|1|AKR1C3,AKR1C3|2	chr10:5080901-5096410|244|29.55|0.88|5.07|+|1|AKR1C3,AKR1C3|2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	525.311059	1572.91135	4.9475	0.002599	-6.2816	-0.0032998	-1.3342	-0.00070085	525.6419974182071	17.307	0.3019	17.057	16.928	17.23	-0.25049	-0.02873	-0.0041514	NaN	14.779	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31205			64009	303	45088	45152							0.1478079705923392
QRRRGVRDLGI	11	Unmodified	_QRRRGVRDLGI_					0	0	0			REV__nc|ENSG00000228741|Q96N96-5|SPATA13	REV__nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.6008605957031	3	442.600609	1324.78	-0.025854	-1.1443E-05	1.0031	0.00044396	0.97722	0.00043252	442.60099916555686	102.47	0.68022	102.34	102.04	102.72	-0.12666					29	15	2	0	0	0	1.0712	1	12751	12751		19.263	1.4295	1	526640	+		64010	27521	45089	45153	69258	69258					0.1305998669138262
QRRRLSPP	8	Unmodified	_QRRRLSPP_					0	0	0		ENST00000486738.5_1_X:153607844-153608453:+|nuORF;ENSG00000102119|ENST00000369842|EMD	ENST00000486738.5_1_X:153607844-153608453:+|nuORF	ENST00000486738.5_1_X:153607844-153608453:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32366943359375	2	505.304324	1008.5941	0.016255	8.2136E-06	-3.0669	-0.0015497	-3.0507	-0.0015415	505.30382262044924	79.072	0.82323	79.091	78.735	79.558	0.018677					33	19	4	0	0	0	0.027866	1	9724	9724		60.294	12.378	1	622350			64011	2382	45090	45154	69259	69259					0.09014209242707238
QRRRRALAEEL	11	Unmodified	_QRRRRALAEEL_					0	0	0			REV__ENSG00000135736|ENST00000258214|CCDC102A	REV__ENSG00000135736|ENST00000258214|CCDC102A	MSMS	OPSCC_39_ClassI_Rep-2	2	466.6076354980469	3	466.607652	1396.80113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.09	1	100.1	99.597	100.6	0.010117								0	0	0	1.4553	1	12768	12768		17.833	0.6664	1		+		64012	23575	45091	45155	69260	69260					0.11859952000259
QRRRRGTLAAP	11	Unmodified	_QRRRRGTLAAP_					0	0	0			REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.3846435546875	2	641.384168	1280.75378	-1.2106	-0.00077648	2.0824	0.0013356	0.87176	0.00055913	641.3853345182382	101.41	0.9041	101.28	100.86	101.76	-0.13157					55	19	4	0	0	0	0.75995	1	12581	12581		60.118	22.307	1	899150	+		64013	29642	45092	45156	69261	69261					0.12463717519904094
QRRRRGTLAAP	11	Unmodified	_QRRRRGTLAAP_					0	0	0			REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	641.384168	1280.75378	0.90452	0.00058014	0.038735	2.4844E-05	0.94325	0.00060499	641.3840517517907	101.3	0.7739	101.31	101.05	101.82	0.0090332	-0.018553	-0.00096673	NaN	60.118	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	914740	+		64014	29642	45092	45156							0.12463717519904094
QRRRRGTLAAP	11	Unmodified	_QRRRRGTLAAP_					0	0	0			REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	641.384168	1280.75378	-1.2106	-0.00077648	2.0824	0.0013356	0.87176	0.00055913	641.3853345182382	101.41	0.9041	101.28	100.86	101.76	-0.13157	-0.054384	0.0016548	NaN	60.118	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899150	+		64015	29642	45092	45156							0.12463717519904094
QRRRRRQRQPH	11	Unmodified	_QRRRRRQRQPH_					0	0	0			REV__ENST00000338745.10_3_3:18466531-18466693:-|nuORF	REV__ENST00000338745.10_3_3:18466531-18466693:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3091430664062	3	525.308823	1572.90464	0.019181	1.0076E-05	4.2849	0.0022509	4.3041	0.002261	525.3097581803506	104.02	1.4167	103.89	103.32	104.74	-0.12561					118	36	5	0	0	0	1.1135	1	12919	12919		3.6191	0.40774	1	313610	+		64016	30594	45093	45157	69262	69262					0.14110296951253076
QRRRRWPVRT	10	Unmodified	_QRRRRWPVRT_					0	0	0		ENST00000264010.8_1_16:67596501-67605146:+|nuORF	ENST00000264010.8_1_16:67596501-67605146:+|nuORF	ENST00000264010.8_1_16:67596501-67605146:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.9485168457031	3	470.948232	1409.82287	-0.027256	-1.2836E-05	-0.22864	-0.00010768	-0.2559	-0.00012052	470.94796731478567	16.994	0.5987	16.786	16.616	17.214	-0.20777					25	11	3	0	0	0	1.102	1	121	121		11.636	1.9898	1	50999			64017	11546	45094	45158	69263	69263					0.13434801539438013
QRRVDQNG	8	Unmodified	_QRRVDQNG_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5;nc|ENSG00000204406|Q9P267-2|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77703857421875	2	486.752121	971.48969	-1.3471	-0.00065572	-3.1738	-0.0015449	-4.5209	-0.0022006	486.7506574666731	30.185	0.81556	30.185	29.652	30.467	0					45	19	3	0	0	0	0.027866	1	1908	1908		30.504	5.0535	1	252220			64018	10343	45095	45159	69264	69264					0.0028046269533206214
QRRVRPALP	9	Unmodified	_QRRVRPALP_					0	0	0		ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8416137695312	2	546.841074	1091.66759	0.67566	0.00036948	-2.4362	-0.0013322	-1.7605	-0.00096274	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	0.97516	2	12416	12384;12416		25.45	1.2474	1	9262700			64019	16514	45096	45160	69265;69266	69266					0.12542757685173456
QRRVRPALP	9	Unmodified	_QRRVRPALP_					0	0	0		ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	ENST00000546828.6_1_12:98909466-98909845:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.8425903320312	2	546.841074	1091.66759	-0.3389	-0.00018533	-1.5165	-0.0008293	-1.8554	-0.0010146	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	0.97516	1	12424	12424		25.45	2.4077	1	9530200			64020	16514	45096	45160	69267	69267					0.12542757685173456
QRRYKDGT	8	Unmodified	_QRRYKDGT_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2713012695312	2	512.270147	1022.52574	-0.23912	-0.0001225	1.8091	0.00092674	1.57	0.00080424	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	0.95679	2	13623	13572;13623		44.117	2.6902	1	6463600	+		64021	27896	45097	45161	69268;69269	69269					0.015379198721802823
QRRYKDGT	8	Unmodified	_QRRYKDGT_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.27099609375	2	512.270147	1022.52574	0.13357	6.8426E-05	2.1505	0.0011017	2.2841	0.0011701	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	1.0198	1	13028	13028		34.173	3.8548	1	236480	+		64022	27896	45097	45161	69270	69270					0.015379198721802823
QRSRSVPL	8	Unmodified	_QRSRSVPL_					0	0	0		ENST00000484546.1_1_9:123151516-123165527:-|nuORF	ENST00000484546.1_1_9:123151516-123165527:-|nuORF	ENST00000484546.1_1_9:123151516-123165527:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7774963378906	2	471.777608	941.540663	0.50012	0.00023594	0.55238	0.0002606	1.0525	0.00049655	471.77777050024685	28.752	0.56372	28.833	28.493	29.056	0.080811					41	13	4	0	0	0	0.77775	1	1639	1639		60.972	2.19	1	2280400			64023	15302	45098	45162	69271	69271					0.0675541174019827
QRTILPPE	8	Unmodified	_QRTILPPE_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.29248046875	2	477.274367	952.53418	0.73329	0.00034998	-2.4704	-0.0011791	-1.7371	-0.00082909	477.2740534933131	47.017	0.73803	47.017	46.623	47.361	0					43	19	3	0	0	0	0.027866	1	4664	4664		35.618	11.099	1	449420	+		64024	22961	45099	45163	69272	69272					0.05601473788806288
QRTPAPSSV	9	Unmodified	_QRTPAPSSV_					0	0	0		ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.75396728515625	2	471.753798	941.493044	0.089316	4.2135E-05	-0.30591	-0.00014431	-0.21659	-0.00010218	471.75361375251094	32.13	1.2069	32.193	31.521	32.728	0.062885					49	30	2	0	0	0	0.34489	1	2158	2158		69.628	3.1983	1	5558100			64025	9350	45100	45164	69273	69273					0.01995712749339873
QRVLPPRKSRS	11	Unmodified	_QRVLPPRKSRS_					0	0	0			REV__ENSG00000164620|ENST00000297164|RELL2	REV__ENSG00000164620|ENST00000297164|RELL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.9383850097656	3	441.93711	1322.7895	1.2309	0.00054398	0.014413	6.3694E-06	1.2453	0.00055035	441.93712138899633	17.039	0.90182	16.885	16.655	17.557	-0.15403					37	17	3	0	0	0	1.0921	1	132	132		13.508	0.55046	1	121110	+		64026	25780	45101	45165	69274	69274					0.141017549768776
QRVTLEKLPPV	11	Unmodified	_QRVTLEKLPPV_					0	0	0		USP10|p.R671Q|1|0.27|ENSG00000103194|chr16:84772554-84772554|G/A|missense_variant	USP10|p.R671Q|1|0.27|ENSG00000103194|chr16:84772554-84772554|G/A|missense_variant	USP10|p.R671Q|1|0.27|ENSG00000103194|chr16:84772554-84772554|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2648010253906	3	427.2626	1278.76597	0.50024	0.00021373	3.7573	0.0016053	4.2575	0.0018191	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.0592	1	5830	5830		22.562	1.5294	1	61030000			64027	38134	45102	45166	69275	69275					0.13773896419684206
QRVTLNGI	8	Unmodified	_QRVTLNGI_					0	0	0		ENSG00000176678|ENST00000320241|FOXL1	ENSG00000176678|ENST00000320241|FOXL1	ENSG00000176678|ENST00000320241|FOXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.76678466796875	2	450.766709	899.518865	-0.50458	-0.00022745	-0.052206	-2.3533E-05	-0.55678	-0.00025098	450.7666834549954	35.226	0.84675	35.039	34.641	35.488	-0.18675					66	21	5	0	0	0	0.44658	1	2643	2643		90.777	0	1	7562200			64028	8658	45103	45167	69276	69276					0.06508606991610577
QRVVVVEVQ	9	Unmodified	_QRVVVVEVQ_					0	0	0		ENST00000416465.5_1_22:31796666-31819296:+|nuORF	ENST00000416465.5_1_22:31796666-31819296:+|nuORF	ENST00000416465.5_1_22:31796666-31819296:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.3156127929688	2	528.314023	1054.61349	-0.13654	-7.2137E-05	0.83471	0.00044099	0.69817	0.00036885	528.3146190415623	97.474	0.97646	97.313	96.862	97.838	-0.16106					47	21	3	0	0	0	0.91321	1	12062	12062		31.53	0	1	223940			64029	13899	45104	45168	69277	69277					0.08837120742964544
QRWKKRYFKLR	11	Unmodified	_QRWKKRYFKLR_					0	0	0		nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH	nc|ENSG00000102780|Q86XP1-2|DGKH	nc|ENSG00000102780|Q86XP1-2|DGKH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.305908203125	3	536.991438	1607.95248	-0.90118	-0.00048392	-3.4235	-0.0018384	-4.3247	-0.0023223	537.324324830581	47.961	0.29617	47.961	47.843	48.14	0					11	8	2	0	0	0	0.024904	1	4861	4861		1.3219	1.3219	1	441620			64030	2426	45105	45169	69278	69278					0.17282558098713707
QRWKLKGR	8	Unmodified	_QRWKLKGR_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3049926757812	2	536.330342	1070.64613	-0.33482	-0.00017957	4.3489	0.0023325	4.0141	0.0021529	536.3328752968168	73.218	0.37061	72.946	72.719	73.09	-0.27126					12	8	2	0	0	0	0.027866	1	8867	8867		38.806	0	1	98168			64031	1075	45106	45170	69279	69279					0.11363372656455795
QRWKLKGR	8	Unmodified	_QRWKLKGR_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.330342	1070.64613	-0.55631	-0.00029836	-1.3883	-0.00074457	-1.9446	-0.0010429	536.3289494043994	73.044	0.40941	73.053	72.735	73.145	0.0096512	0.18097	-0.0037285	NaN	45.952	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330170			64032	1075	45106	45170							0.11363372656455795
QRWKLKGR	8	Unmodified	_QRWKLKGR_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.330342	1070.64613	-0.50459	-0.00027063	2.5129	0.0013477	2.0083	0.0010771	536.331801817054	73.125	0.55083	72.848	72.582	73.133	-0.2769	-0.024582	0.00045606	NaN	45.952	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105650			64033	1075	45106	45170							0.11363372656455795
QRWKLKGR	8	Unmodified	_QRWKLKGR_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.330342	1070.64613	-0.61063	-0.0003275	2.5565	0.0013711	1.9458	0.0010436	536.3319043620982	73.047	0.58888	72.782	72.469	73.058	-0.26479	-0.08988	0.00050285	NaN	45.952	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93664			64034	1075	45106	45170							0.11363372656455795
QRWKLKGR	8	Unmodified	_QRWKLKGR_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.330342	1070.64613	-0.99788	-0.00053519	2.5724	0.0013797	1.5745	0.00084448	536.3316761916213	72.93	0.50542	72.732	72.454	72.96	-0.19811	-0.1405	0.00051996	NaN	45.952	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120170			64035	1075	45106	45170							0.11363372656455795
QRWTETYVRW	10	Unmodified	_QRWTETYVRW_					0	0	0		ENST00000463026.5_1_7:2404000-2406084:+|nuORF	ENST00000463026.5_1_7:2404000-2406084:+|nuORF	ENST00000463026.5_1_7:2404000-2406084:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.26123046875	3	475.573837	1423.69968	0.15967	7.5937E-05	-3.6334	-0.0017279	-3.4737	-0.001652	475.5721835513933	33.65	0.2049	33.419	33.273	33.478	-0.23107					6	4	2	0	0	0	0.03519	1	2401	2401		36.318	4.6834	1	75614			64036	14729	45107	45171	69280	69280					0.004780805776363195
QRYDLPFIT	9	Unmodified	_QRYDLPFIT_					0	0	0		ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.77734375	2	576.806031	1151.59751	-0.24954	-0.00014394	-0.093179	-5.3746E-05	-0.34272	-0.00019768	576.8058102954295	47.178	0.75027	46.909	46.561	47.311	-0.26939					49	20	4	0	0	0	0.024541	1	4548	4548		14.137	3.2716	1	1692400			64037	5292	45108	45172	69281	69281					0.02777414506022069
QRYLQGSSVQL	11	Unmodified	_QRYLQGSSVQL_					0	0	0		VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant;ENSG00000168140|ENST00000304735|VASN	VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.3450927734375	2	639.843676	1277.6728	0.62354	0.00039897	-1.5307	-0.00097941	-0.90716	-0.00058044	640.3446580883069	100.07	0.55721	99.941	99.64	100.2	-0.12503					35	18	2	0	0	0	0.98542	1	12435	12435		40.058	2.2467	1	1115100			64038	7788	45109	45173	69282	69282					0.04506971966475248
QRYSKRVYI	9	Unmodified	_QRYSKRVYI_					0	0	0		ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENST00000436236.1_1_3:31638325-31661336:+|nuORF	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9000549316406	3	404.899773	1211.67749	-0.73473	-0.00029749	0.97256	0.00039379	0.23783	9.6295E-05	404.9000452959637	28.554	0.75511	28.309	28.041	28.796	-0.24524					52	17	5	0	0	0	0.80003	1	1688	1688		39.253	2.8061	1	1008800			64039	7098	45110	45174	69283	69283					0.08011900899919056
QSAAKRRSP	9	Unmodified	_QSAAKRRSP_					0	0	0			REV__ENSG00000125505|ENST00000245615|MBOAT7	REV__ENSG00000125505|ENST00000245615|MBOAT7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7723083496094	2	500.785964	999.557376	-0.47495	-0.00023785	3.2807	0.0016429	2.8058	0.0014051	500.78754726156393	54.955	0.78982	54.809	54.533	55.322	-0.14609					30	18	3	0	0	0	0.024447	1	5954	5954		32.812	10.853	1	763120	+		64040	22826	45111	45175	69284	69284					0.05757912626131656
QSAAKRRSP	9	Unmodified	_QSAAKRRSP_					0	0	0			REV__ENSG00000125505|ENST00000245615|MBOAT7	REV__ENSG00000125505|ENST00000245615|MBOAT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.785964	999.557376	-0.16308	-8.1666E-05	2.9718	0.0014882	2.8087	0.0014066	500.78735078862826	55.007	0.59377	54.776	54.565	55.159	-0.23087	-0.051273	1.764E-05	NaN	51.193	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876140	+		64041	22826	45111	45175							0.05757912626131656
QSAAKRRSP	9	Unmodified	_QSAAKRRSP_					0	0	0			REV__ENSG00000125505|ENST00000245615|MBOAT7	REV__ENSG00000125505|ENST00000245615|MBOAT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.785964	999.557376	0.15928	7.9767E-05	2.5938	0.0012989	2.7531	0.0013787	500.78724469624046	54.963	0.77484	54.757	54.502	55.277	-0.20613	-0.070421	-0.00036094	NaN	51.193	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	724420	+		64042	22826	45111	45175							0.05757912626131656
QSACLLLHLV	10	Unmodified	_QSACLLLHLV_					0	0	0			REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	REV__ENST00000317012.4_1_3:111313738-111313888:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.7863159179688	2	548.812802	1095.61105	-0.59927	-0.00032889	-3.0658	-0.0016826	-3.6651	-0.0020115	548.8110236623085	65.756	0.78235	65.787	65.416	66.199	0.031593					49	20	3	0	0	0	0.03519	1	7789	7789		39.253	0	1	516820	+		64043	30289	45112	45176	69285	69285					0.06706949013619123
QSACPTPSH	9	Unmodified	_QSACPTPSH_					0	0	0			REV__ENST00000609229.1_1_22:18904401-18907344:-|nuORF	REV__ENST00000609229.1_1_22:18904401-18907344:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2720642089844	2	464.203084	926.391615	-0.10649	-4.9435E-05	2.6309	0.0012213	2.5244	0.0011718	464.2044215070797	19.57	0.19555	19.451	19.348	19.543	-0.11872					6	3	2	0	0	0	0.024541	1	427	427		9.1829	0	1	9991	+		64044	35980	45113	45177	69286	69286					-0.07452481944881129
QSAFTCPSSLI	11	Unmodified	_QSAFTCPSSLI_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.2791137695312	2	577.281531	1152.54851	-0.31357	-0.00018102	-2.6536	-0.0015319	-2.9672	-0.0017129	577.2798913593097	85.989	0.85695	85.943	85.697	86.554	-0.045105					51	19	4	0	0	0	0.40147	1	10764	10764		82.75	10.873	1	538360	+		64045	30373	45114	45178	69287	69287					-0.021662418452024212
QSAFTCPSSLI	11	Unmodified	_QSAFTCPSSLI_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.281531	1152.54851	-0.36074	-0.00020825	-2.5925	-0.0014966	-2.9533	-0.0017049	577.2800832595535	86.04	1.0685	86.04	85.789	86.857	0	0.10163	-0.00048353	NaN	82.75	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519590	+		64046	30373	45114	45178							-0.021662418452024212
QSAFTCPSSLI	11	Unmodified	_QSAFTCPSSLI_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	577.281531	1152.54851	-0.31357	-0.00018102	-2.6536	-0.0015319	-2.9672	-0.0017129	577.2798913593097	85.989	0.85695	85.943	85.697	86.554	-0.045105	0.0053125	-0.00055405	NaN	82.75	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538360	+		64047	30373	45114	45178							-0.021662418452024212
QSAFTCPSSLI	11	Unmodified	_QSAFTCPSSLI_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.281531	1152.54851	-1.2224	-0.00070568	-1.6841	-0.00097219	-2.9065	-0.0016779	577.280615620715	85.978	1.0662	86.002	85.697	86.763	0.023666	0.063431	0.00056535	NaN	82.75	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557020	+		64048	30373	45114	45178							-0.021662418452024212
QSAFTCPSSLI	11	Unmodified	_QSAFTCPSSLI_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	577.281531	1152.54851	0.19095	0.00011023	-2.8456	-0.0016427	-2.6547	-0.0015325	577.2797928162427	86.146	0.65079	85.959	85.56	86.211	-0.18696	0.020964	-0.00077572	NaN	82.75	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55670	+		64049	30373	45114	45178							-0.021662418452024212
QSAFTCPSSLI	11	Unmodified	_QSAFTCPSSLI_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.281531	1152.54851	0.25947	0.00014979	-2.1395	-0.0012351	-1.88	-0.0010853	577.2804321258889	85.958	0.39153	85.809	85.66	86.052	-0.14967	-0.12938	3.9541E-05	NaN	82.75	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79396	+		64050	30373	45114	45178							-0.021662418452024212
QSAFTCPSSLI	11	Unmodified	_QSAFTCPSSLI_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	577.281531	1152.54851	-0.023871	-1.378E-05	-1.7445	-0.001007	-1.7683	-0.0010208	577.2816148838045	86.014	0.34701	85.876	85.702	86.049	-0.13734	-0.061955	0.00049564	NaN	82.75	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55988	+		64051	30373	45114	45178							-0.021662418452024212
QSAIVLQQP	9	Unmodified	_QSAIVLQQP_					0	0	0			REV__ENSG00000102804|ENST00000458659|TSC22D1	REV__ENSG00000102804|ENST00000458659|TSC22D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2586364746094	2	492.279649	982.544745	-1.0852	-0.00053421	2.2434	0.0011044	1.1583	0.0005702	492.2807009459227	54.309	0.76316	54.173	53.779	54.543	-0.13617					51	22	4	0	0	0	0.024418	1	5732	5732		37.812	16.126	1	738810	+		64052	21329	45115	45179	69288	69288					0.05277456443241135
QSAKHFQKKL	10	Unmodified	_QSAKHFQKKL_					0	0	0			REV__nc|ENSG00000140600|Q99963-4|SH3GL3	REV__nc|ENSG00000140600|Q99963-4|SH3GL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	3	405.571657	1213.69314	-0.38873	-0.00015766	0.46747	0.00018959	0.078746	3.1937E-05	405.57175366459853	27.342	0.72003	27.186	26.844	27.564	-0.15664					34	16	3	0	0	0	0.03519	1	1470	1470		40.058	19.221	1	255080	+		64053	36717	45116	45180	69289	69289					0.09484187416956047
QSAKLKSTLTT	11	Unmodified	_QSAKLKSTLTT_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3431396484375	2	589.342978	1176.6714	-1.6043	-0.00094547	1.3406	0.00079008	-0.26367	-0.00015539	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0183	1	11818	11818		32.751	3.5805	1	12648000	+		64054	36503;20881	45117	45181	69290	69290					0.09013337877695449
QSAKLKSTLTT	11	Unmodified	_QSAKLKSTLTT_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3431396484375	2	589.342978	1176.6714	-1.1102	-0.00065427	0.90341	0.00053242	-0.20676	-0.00012185	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	1.0281	1	11470	11470		30.569	4.5055	1	4794700	+		64055	36503;20881	45117	45181	69291	69291					0.09013337877695449
QSAKLKSTLTT	11	Unmodified	_QSAKLKSTLTT_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3433837890625	2	589.342978	1176.6714	0.92698	0.00054631	-1.7437	-0.0010276	-0.8167	-0.00048132	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0281	1	11531	11531		30.569	3.876	1	4746700	+		64056	36503;20881	45117	45181	69292	69292					0.09013337877695449
QSAKLKSTLTT	11	Unmodified	_QSAKLKSTLTT_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3425903320312	2	589.342978	1176.6714	-1.6034	-0.00094497	1.3924	0.00082063	-0.21098	-0.00012434	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0281	1	11175	11175		30.569	0.25114	1	5827400	+		64057	36503;20881	45117	45181	69293	69293					0.09013337877695449
QSAKLKSTLTT	11	Unmodified	_QSAKLKSTLTT_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3424682617188	2	589.342978	1176.6714	-1.9349	-0.0011403	1.7169	0.0010118	-0.21798	-0.00012847	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0075	1	11437	11437		35.152	2.4015	1	15816000	+		64058	36503;20881	45117	45181	69294	69294					0.09013337877695449
QSAKLKSTLTT	11	Unmodified	_QSAKLKSTLTT_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3;REV__ENSG00000090615|ENST00000450791|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.342978	1176.6714	-0.33817	-0.0001993	0.073125	4.3095E-05	-0.26504	-0.0001562	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0183	1	11113	11113		32.751	3.5805	1	6196800	+		64059	36503;20881	45117	45181	69295	69295					0.09013337877695449
QSALFRTNL	9	Unmodified	_QSALFRTNL_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3072509765625	2	525.290548	1048.56654	-0.56981	-0.00029931	3.3399	0.0017544	2.7701	0.0014551	525.2920285649963	47.864	0.55583	47.766	47.52	48.076	-0.097553					23	14	2	0	0	0	0.0242	1	4748	4748		69.628	12.907	1	709360	+		64060	25190	45118	45182	69296	69296					0.044202611917853574
QSALFRTNL	9	Unmodified	_QSALFRTNL_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.290548	1048.56654	-0.80027	-0.00042037	3.7248	0.0019566	2.9245	0.0015362	525.794218578152	48.28	0.45131	48.004	47.664	48.116	-0.27598	0.14514	0.00049607	NaN	69.628	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668440	+		64061	25190	45118	45182							0.044202611917853574
QSALFRTNL	9	Unmodified	_QSALFRTNL_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-2|AUTS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.290548	1048.56654	0.33117	0.00017396	2.6566	0.0013955	2.9877	0.0015694	525.2917255271688	47.994	0.41713	47.807	47.561	47.978	-0.18684	-0.052047	-0.00062617	NaN	69.628	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710470	+		64062	25190	45118	45182							0.044202611917853574
QSALVMIATL	10	Unmodified	_QSALVMIATL_					0	0	0			REV__nc|ENSG00000131269|O75027-3|ABCB7	REV__nc|ENSG00000131269|O75027-3|ABCB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.761474609375	2	523.79936	1045.58417	0.65056	0.00034076	-0.80002	-0.00041905	-0.14946	-7.8285E-05	523.798460203552	59.687	0.34031	59.51	59.401	59.741	-0.1761					13	8	2	0	0	0	0.03519	1	6594	6594		53.089	19.167	1	134970	+		64063	23198	45119	45183	69297	69297					0.06319840402443333
QSAPQIPKI	9	Unmodified	_QSAPQIPKI_					0	0	0			REV__nc|ENSG00000231004|P0C854|CECR9	REV__nc|ENSG00000231004|P0C854|CECR9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.29034423828125	2	491.290017	980.565481	0.82396	0.0004048	-0.82893	-0.00040724	-0.0049667	-2.4401E-06	491.2895083322687	73.743	1.2398	73.743	73.477	74.717	0					53	29	3	0	0	0	0.19099	1	9035	9035		90.37	8.1293	1	5601200	+		64064	37147	45120	45184	69298	69298					0.07442046822893644
QSAPRESAR	9	Unmodified	_QSAPRESAR_					0	0	0		ENST00000240101.2_1_8:29205656-29205974:-|nuORF	ENST00000240101.2_1_8:29205656-29205974:-|nuORF	ENST00000240101.2_1_8:29205656-29205974:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.23162841796875	2	501.259779	1000.50501	-1.0222	-0.00051238	-4.0666	-0.0020384	-5.0888	-0.0025508	501.257808518555	38.007	1.4305	37.924	37.323	38.753	-0.082516					59	39	2	0	0	0	0.023837	1	3191	3191		45.972	5.3996	1	702400			64065	11279	45121	45185	69299	69299					0.004773294925257687
QSAPSPDVGSG	11	Unmodified	_QSAPSPDVGSG_					0	0	0		nc|ENSG00000127838|Q8N490-2|PNKD	nc|ENSG00000127838|Q8N490-2|PNKD	nc|ENSG00000127838|Q8N490-2|PNKD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.23077392578125	2	501.230353	1000.44615	-0.89553	-0.00044886	1.6075	0.00080573	0.71198	0.00035687	501.23100260366385	38.398	1.444	38.398	37.632	39.076	0					99	40	4	0	0	0	0.82076	1	3221	3221		56.434	5.0983	1	4186900			64066	18251	45122	45186	69300	69300					-0.05405191592456049
QSARKPLL	8	Unmodified	_QSARKPLL_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7976989746094	2	456.784902	911.55525	-0.41043	-0.00018748	0.56921	0.00026	0.15877	7.2525E-05	456.78498247143995	28.026	0.65572	27.781	27.506	28.162	-0.24524					27	15	2	0	0	0	0.027866	1	1648	1648		55.504	0	1	472640			64067	2842	45123	45187	69301	69301					0.09593483888329501
QSASEWFKK	9	Unmodified	_QSASEWFKK_					0	0	0			REV__nc|ENSG00000160271|Q12967-3|RALGDS	REV__nc|ENSG00000160271|Q12967-3|RALGDS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	556.2633056640625	2	555.782556	1109.55056	-0.022317	-1.2403E-05	-0.52537	-0.00029199	-0.54769	-0.00030439	555.7822409510796	32.126	0.34529	31.89	31.697	32.042	-0.23666					11	7	2	0	0	0	0.024539	1	2197	2197		27.882	0	1	65669	+		64068	25303	45124	45188	69302	69302					0.00016554954913772235
QSATPVKRPRV	11	Unmodified	_QSATPVKRPRV_					0	0	0			REV__ENST00000373578.6_1_20:36022665-36024618:+|nuORF	REV__ENST00000373578.6_1_20:36022665-36024618:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.869384765625	2	619.870028	1237.7255	-1.0156	-0.00062956	0.033515	2.0775E-05	-0.98212	-0.00060879	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	0.95882	1	12005	12005		45.972	1.5951	1	4459000	+		64069	31260	45125	45189	69303	69303					0.11614974819917734
QSATPVKRPRV	11	Unmodified	_QSATPVKRPRV_					0	0	0			REV__ENST00000373578.6_1_20:36022665-36024618:+|nuORF	REV__ENST00000373578.6_1_20:36022665-36024618:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8701171875	2	619.870028	1237.7255	-0.13269	-8.2249E-05	-0.82013	-0.00050837	-0.95281	-0.00059062	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0392	1	11671	11671		28.081	5.039	1	4730400	+		64070	31260	45125	45189	69304	69304					0.11614974819917734
QSATPVKRPRV	11	Unmodified	_QSATPVKRPRV_					0	0	0			REV__ENST00000373578.6_1_20:36022665-36024618:+|nuORF	REV__ENST00000373578.6_1_20:36022665-36024618:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	619.8690795898438	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.685	1	91.545	91.045	92.045	-0.13942								0	0	0	1.168	1	11236	11236		32.751	7.1765	1		+		64071	31260	45125	45189	69305	69305					0.11614974819917734
QSAVMDGAPDS	11	Unmodified	_QSAVMDGAPDS_					0	0	0		nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	nc|ENSG00000124496|Q96PN7|TRERF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2493896484375	2	539.229496	1076.44444	-0.76852	-0.00041441	-1.2257	-0.00066095	-1.9943	-0.0010754	539.2287017760893	56.238	0.40101	56.082	55.894	56.295	-0.15655					15	9	2	0	0	0	0.02475	1	6059	6059		42.864	23.761	1	101670			64072	4054	45126	45190	69306	69306					-0.09072568672741
QSCCLIEDGE	10	Unmodified	_QSCCLIEDGE_					0	0	0		ENST00000523198.5_1_5:153826164-153832030:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L	ENST00000523198.5_1_5:153826164-153832030:+|nuORF	ENST00000523198.5_1_5:153826164-153832030:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2767944335938	2	548.717907	1095.42126	-0.92752	-0.00050895	-2.2298	-0.0012235	-3.1573	-0.0017325	548.7165367956212	61.607	0.64571	61.429	61.12	61.766	-0.17781					28	15	3	0	0	0	0.03519	1	6953	6953		67.494	0	1	346520			64073	7293	45127	45191	69307	69307					-0.12263330781706827
QSCLFKIAM	9	Unmodified	_QSCLFKIAM_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.7835083007812	2	520.767006	1039.51946	-0.3359	-0.00017492	-2.6027	-0.0013554	-2.9386	-0.0015303	520.765594101602	63.776	0.73707	63.549	63.212	63.949	-0.22773					34	18	3	0	0	0	0.024517	1	7211	7211		19.36	1.0356	1	477650			64074	6175	45128	45192	69308	69308					0.001279423247979139
QSCLFKIAM	9	Unmodified	_QSCLFKIAM_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.767006	1039.51946	0.18322	9.5415E-05	-3.6891	-0.0019212	-3.5059	-0.0018258	520.7651115400892	63.8	0.93105	63.608	63.069	64	-0.19243	0.020947	-0.00045386	NaN	19.36	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432080			64075	6175	45128	45192							0.001279423247979139
QSCLFKIAM	9	Unmodified	_QSCLFKIAM_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.767006	1039.51946	0.38577	0.0002009	-3.5998	-0.0018746	-3.214	-0.0016737	520.7651844698534	63.862	0.75569	63.604	63.201	63.956	-0.25824	0.0172	-0.0003608	NaN	19.36	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	561890			64076	6175	45128	45192							0.001279423247979139
QSCPIIRIP	9	Unmodified	_QSCPIIRIP_					0	0	0		ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	ENSG00000128607|ENST00000335420|KLHDC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.30810546875	2	513.791869	1025.56919	-0.63424	-0.00032587	1.2383	0.00063624	0.60408	0.00031037	513.7912507473847	54.209	0.71732	54.209	54.076	54.794	0					51	20	3	0	0	0	0.024021	1	5980	5980		49.442	0	1	2373300			64077	4303	45129	45193	69309	69309					0.05742393325112971
QSCSVVEQPS	10	Unmodified	_QSCSVVEQPS_					0	0	0			REV__ENST00000533897.1_1_11:88027176-88029469:-|nuORF	REV__ENST00000533897.1_1_11:88027176-88029469:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2383422851562	2	532.239864	1062.46517	-0.6044	-0.00032168	-2.623	-0.0013961	-3.2274	-0.0017177	532.2383187042672	40.269	0.59568	40.044	39.773	40.368	-0.225					48	15	4	0	0	0	0.96069	1	3462	3462		50.034	5.9167	1	3674100	+		64078	21821	45130	45194	69310	69310					-0.0635597829307244
QSDAARHNGE	10	Unmodified	_QSDAARHNGE_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.7388305664062	2	542.741951	1083.46935	-0.17178	-9.3232E-05	-4.4045	-0.0023905	-4.5762	-0.0024837	542.7393517836352	58.492	0.59899	58.307	58.025	58.624	-0.18507					29	14	3	0	0	0	0.70466	1	6440	6440		66.962	19.002	1	1289400	+		64079	20125	45131	45195	69311	69311					-0.0690475275512199
QSDAARHNGE	10	Unmodified	_QSDAARHNGE_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.741951	1083.46935	-0.39709	-0.00021552	-4.3589	-0.0023658	-4.756	-0.0025813	542.7394138868001	58.513	0.7336	58.325	58.007	58.74	-0.18795	0.0006058	5.2273E-05	NaN	66.962	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308400	+		64080	20125	45131	45195							-0.0690475275512199
QSDAARHNGE	10	Unmodified	_QSDAARHNGE_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	542.741951	1083.46935	-0.17178	-9.3232E-05	-4.4045	-0.0023905	-4.5762	-0.0024837	542.7393517836352	58.492	0.59899	58.307	58.025	58.624	-0.18507	-0.017673	2.8329E-06	NaN	66.962	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1289400	+		64081	20125	45131	45195							-0.0690475275512199
QSDAARHNGE	10	Unmodified	_QSDAARHNGE_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.741951	1083.46935	-0.077438	-4.2029E-05	-4.5092	-0.0024474	-4.5867	-0.0024894	542.7392856428595	58.583	0.61711	58.342	58.044	58.661	-0.24165	0.017067	-0.00011091	NaN	66.962	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1281500	+		64082	20125	45131	45195							-0.0690475275512199
QSDATMCIL	9	Carbamidomethyl (C)	_QSDATMC(Carbamidomethyl (C))IL_	QSDATMC(1)IL		QSDATMC(82)IL		0	1	0		ENST00000401827.7_1_8:66631113-66631242:-|nuORF	ENST00000401827.7_1_8:66631113-66631242:-|nuORF	ENST00000401827.7_1_8:66631113-66631242:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7325439453125	2	519.73336	1037.45217	-0.71771	-0.00037302	0.52925	0.00027507	-0.18845	-9.7945E-05	519.7334995099085	56.998	0.96044	56.998	56.643	57.603	0					74	26	5	0	0	0	0.25032	1	6400	6400		82.305	23.523	1	5820400			64083	13676	45132	45196	69312	69312	184				-0.06506132676827292
QSDATMCIL	9	Carbamidomethyl (C)	_QSDATMC(Carbamidomethyl (C))IL_	QSDATMC(1)IL		QSDATMC(66)IL		0	1	0		ENST00000401827.7_1_8:66631113-66631242:-|nuORF	ENST00000401827.7_1_8:66631113-66631242:-|nuORF	ENST00000401827.7_1_8:66631113-66631242:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.732666015625	2	519.73336	1037.45217	-0.069167	-3.5948E-05	-0.23855	-0.00012398	-0.30772	-0.00015993	519.7331431207076	57.168	0.97569	57.004	56.606	57.582	-0.16431					76	26	5	0	0	0	0.39228	1	6394	6394		66.429	10.925	1	5525100			64084	13676	45132	45196	69313	69313	184				-0.06506132676827292
QSDATMCIL	9	Carbamidomethyl (C)	_QSDATMC(Carbamidomethyl (C))IL_	QSDATMC(1)IL		QSDATMC(77)IL		0	1	0		ENST00000401827.7_1_8:66631113-66631242:-|nuORF	ENST00000401827.7_1_8:66631113-66631242:-|nuORF	ENST00000401827.7_1_8:66631113-66631242:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7321166992188	2	519.73336	1037.45217	-0.4961	-0.00025784	0.26032	0.00013529	-0.23578	-0.00012254	519.7334210208263	56.867	0.8518	56.962	56.614	57.465	0.095306					69	23	5	0	0	0	0.29158	1	6299	6299		76.774	10.345	1	5897200			64085	13676	45132	45196	69314	69314	184				-0.06506132676827292
QSDERSAAR	9	Unmodified	_QSDERSAAR_					0	0	0			REV__ENST00000510646.1_1_5:135764749-135765112:+|nuORF	REV__ENST00000510646.1_1_5:135764749-135765112:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2795715332031	2	510.246869	1018.47918	-0.59852	-0.00030539	-2.3779	-0.0012133	-2.9764	-0.0015187	510.24524522938634	35.387	0.19912	35.201	35.061	35.26	-0.18675					6	4	2	0	0	0	0.023274	1	2652	2652		58.23	0	1	77089	+		64086	34107	45133	45197	69315	69315					-0.029315647497583086
QSDILRQLS	9	Unmodified	_QSDILRQLS_					0	0	0			REV__ENSG00000184371|ENST00000329608|CSF1	REV__ENSG00000184371|ENST00000329608|CSF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8162841796875	2	530.293288	1058.57202	-0.19424	-0.000103	-4.4112	-0.0023392	-4.6054	-0.0024422	530.2907674176844	71.686	1.0118	71.424	71.075	72.087	-0.26199					46	24	2	0	0	0	0.024477	1	8342	8342		20.947	0	1	470700	+		64087	27664	45134	45198	69316	69316					0.04507939983614051
QSDKVYEVY	9	Unmodified	_QSDKVYEVY_					0	0	0		ENST00000456901.1_1_7:145280818-145281352:+|nuORF;ENSG00000156162|ENST00000414645|DPY19L4	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.77197265625	2	565.771854	1129.52915	-0.88118	-0.00049854	0.34952	0.00019775	-0.53166	-0.0003008	565.7718282714278	44.491	0.90779	44.387	44.099	45.007	-0.10468					76	23	5	0	0	0	0.19099	2	4151	4151;4175		90.37	22.876	1	4156200			64088	14603	45135	45199	69317;69318	69317					-0.030428748644681036
QSDKVYEVY	9	Unmodified	_QSDKVYEVY_					0	0	0		ENST00000456901.1_1_7:145280818-145281352:+|nuORF;ENSG00000156162|ENST00000414645|DPY19L4	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.7715454101562	2	565.771854	1129.52915	-0.68748	-0.00038896	0.21009	0.00011886	-0.47739	-0.0002701	565.7717615745074	44.715	0.91286	44.467	44.148	45.06	-0.24733					77	23	5	0	0	0	0.16638	2	4168	4168;4191		95.815	37.033	1	4249300			64089	14603	45135	45199	69319;69320	69319					-0.030428748644681036
QSDKVYEVY	9	Unmodified	_QSDKVYEVY_					0	0	0		ENST00000456901.1_1_7:145280818-145281352:+|nuORF;ENSG00000156162|ENST00000414645|DPY19L4	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.7709350585938	2	565.771854	1129.52915	-0.9408	-0.00053228	0.39038	0.00022087	-0.55042	-0.00031141	565.7718805731424	44.701	0.87247	44.489	44.15	45.022	-0.21109					76	22	5	0	0	0	0.086035	3	4180	4170;4180;4191		115.49	35.555	1	4676600			64090	14603	45135	45199	69321;69322;69323	69322					-0.030428748644681036
QSDPAPLQH	9	Unmodified	_QSDPAPLQH_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.7435607910156	2	496.743431	991.472308	-0.53648	-0.0002665	-0.72172	-0.00035851	-1.2582	-0.000625	496.74276846054124	31.112	1.0272	30.871	30.497	31.524	-0.24109					43	25	4	0	0	0	0.03849	1	2046	2046		134.81	32.037	1	2394500			64091	7172	45136	45200	69324	69324					-0.023768776303313643
QSDPAPLQH	9	Unmodified	_QSDPAPLQH_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.743408203125	2	496.743431	991.472308	-0.44154	-0.00021933	-1.2645	-0.00062814	-1.7061	-0.00084747	496.74264079962103	31.029	0.8704	30.844	30.49	31.36	-0.18503					38	21	4	0	0	0	0.18994	1	2026	2026		90.601	31.819	1	3197800			64092	7172	45136	45200	69325	69325					-0.023768776303313643
QSDPAPLQH	9	Unmodified	_QSDPAPLQH_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7433776855469	2	496.743431	991.472308	-0.32245	-0.00016017	-0.36866	-0.00018313	-0.69111	-0.0003433	496.7433870260556	30.939	0.77718	30.786	30.384	31.161	-0.15231					31	18	3	0	0	0	0.2101	2	2003	2003;2017		87.696	18.91	1	2883800			64093	7172	45136	45200	69326;69327	69326					-0.023768776303313643
QSDPKPSQY	9	Unmodified	_QSDPKPSQY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.248779296875	2	525.248546	1048.48254	-0.72813	-0.00038245	0.39647	0.00020824	-0.33167	-0.00017421	525.2487746450762	27.013	1.1814	26.771	26.372	27.553	-0.24217					73	27	5	0	0	0	0.013719	3	1462	1440;1450;1462		223.88	82.358	1	4923300			64094	5132	45137	45201	69328;69329;69330	69330					-0.03976314695751171
QSDPKPSQY	9	Unmodified	_QSDPKPSQY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2484741210938	2	525.248546	1048.48254	-0.34874	-0.00018317	-0.065818	-3.4571E-05	-0.41455	-0.00021774	525.2485157067587	26.788	0.92425	26.62	26.262	27.186	-0.16816					71	21	5	0	0	0	0.012922	4	1399	1399;1407;1419;1431		172.25	47.955	1	4415800			64095	5132	45137	45201	69331;69332;69333;69334	69331					-0.03976314695751171
QSDPKPSQY	9	Unmodified	_QSDPKPSQY_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2484741210938	2	525.248546	1048.48254	-0.56579	-0.00029718	0.078285	4.1119E-05	-0.48751	-0.00025606	525.2485696371147	26.807	0.79387	26.65	26.351	27.144	-0.15677					47	18	4	0	0	0	0.079716	3	1397	1386;1397;1410		117.81	29.634	1	1214700			64096	5132	45137	45201	69335;69336;69337	69336					-0.03976314695751171
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(240)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.2261962890625	2	565.226953	1128.43935	-0.096248	-5.4402E-05	0.054953	3.1061E-05	-0.041295	-2.3341E-05	565.2268620339233	35.14	1.2066	34.924	34.467	35.674	-0.21555					85	30	4	0	0	0	4.429E-06	5	2647	2612;2623;2635;2647;2660		237.92	127.8	1	2259900			64097	2730	45138	45202	69338;69339;69340;69341;69342	69341		104			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(180)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.2276000976562	2	565.226953	1128.43935	0.049209	2.7814E-05	-1.5689	-0.00088678	-1.5197	-0.00085897	565.2258892013017	37.23	2.9013	37.037	35.798	38.699	-0.193					149	78	3	0	0	0	0.0059825	3	2990	2959;2990;3001		177.3	81.271	1	2059300			64098	2730	45138	45202	69343;69344;69345	69344		104			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(300)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.2268676757812	2	565.226953	1128.43935	-0.31685	-0.00017909	0.22994	0.00012997	-0.086913	-4.9126E-05	565.2269429604038	34.969	1.4142	34.756	34.237	35.651	-0.21246					91	35	4	0	0	0	1.8968E-06	5	2591	2591;2602;2615;2628;2641		298.95	155.06	1	1891500			64099	2730	45138	45202	69346;69347;69348;69349;69350	69346		104			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(200)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.22705078125	2	565.226953	1128.43935	-0.84492	-0.00047757	-1.6824	-0.00095092	-2.5273	-0.0014285	565.2257594710877	37.187	2.2359	36.968	36.767	39.003	-0.2195					134	60	4	0	0	0	0.0001986	2	3000	2965;3000		195.57	104.97	1	1862400			64100	2730	45138	45202	69351;69352	69352		104			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_		QSDPTQSGM(1)Y		QSDPTQSGM(120)Y	0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.2239990234375	2	565.226953	1128.43935	0.19208	0.00010857	-1.2392	-0.0007004	-1.0471	-0.00059183	565.2261176922718	37.069	2.9863	36.86	35.63	38.616	-0.2092					190	79	3	0	0	0	0.22838	1	2939	2939		117.53	37.071	1	2356300			64101	2730	45138	45202	69353	69353		104			-0.1197287253532977
QSDPTQSGMY	10	Oxidation (M)	_QSDPTQSGM(Oxidation (M))Y_					0	0	1		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	565.226953	1128.43935	-0.61235	-0.00034612	0.52946	0.00029926	-0.082894	-4.6854E-05	565.2272257459204	34.64	0.83496	34.465	34.011	34.846	-0.17557	-0.25034	0.00034593	NaN	298.95	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	915120			64102	2730	45138	45202				104			-0.1197287253532977
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.22998046875	2	557.229496	1112.44444	-0.22337	-0.00012447	0.53094	0.00029585	0.30757	0.00017139	557.2296523234664	43.229	1.0335	43.117	42.775	43.809	-0.11253					70	27	4	0	0	0	0.27169	1	3938	3938		112.11	40.812	1	3833800			64103	2730	45138	45203	69354	69354					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2294921875	2	557.229496	1112.44444	-0.51549	-0.00028725	0.34184	0.00019049	-0.17365	-9.6762E-05	557.2295441544712	43.394	0.68742	43.157	42.839	43.527	-0.23736					59	18	4	0	0	0	0.47249	1	3955	3955		91.265	23.772	1	3897300			64104	2730	45138	45203	69355	69355					-0.10728568672698202
QSDPTQSGMY	10	Unmodified	_QSDPTQSGMY_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.2296142578125	2	557.229496	1112.44444	-0.95688	-0.0005332	0.81146	0.00045217	-0.14542	-8.1032E-05	557.2297858053316	43.33	0.7624	43.104	42.793	43.555	-0.22596					49	20	3	0	0	0	0.37307	2	3949	3949;3959		101.46	24.142	1	3294700			64105	2730	45138	45203	69356;69357	69356					-0.10728568672698202
QSDPWQQELY	10	Unmodified	_QSDPWQQELY_					0	0	0		ENST00000578711.1_1_17:7128236-7128413:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF;nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.2913818359375	2	647.290942	1292.56733	-2.1801	-0.0014112	2.1677	0.0014031	-0.012395	-8.0232E-06	647.2922220640598	70.968	0.60995	70.696	70.493	71.103	-0.27185					37	13	4	0	0	0	0.41983	2	8266	8266;8277		96.665	27.037	1	1341700			64106	1487	45139	45204	69358;69359	69358					-0.06724988949804356
QSDPWQQELY	10	Unmodified	_QSDPWQQELY_					0	0	0		ENST00000578711.1_1_17:7128236-7128413:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF;nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	647.2914428710938	2	647.290942	1292.56733	0.28065	0.00018166	-0.15914	-0.00010301	0.12151	7.8655E-05	647.2907220404496	70.968	0.6962	70.711	70.468	71.164	-0.25713					45	16	4	0	0	0	0.082298	2	8279	8279;8292		140.11	57.872	1	1429000			64107	1487	45139	45204	69360;69361	69360					-0.06724988949804356
QSDPWQQELY	10	Unmodified	_QSDPWQQELY_					0	0	0		ENST00000578711.1_1_17:7128236-7128413:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF;ENST00000578319.5_1_17:7127738-7128413:+|nuORF;nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	647.2909545898438	2	647.290942	1292.56733	-0.041605	-2.6931E-05	-0.15746	-0.00010192	-0.19907	-0.00012885	647.2907131081658	70.845	0.87569	70.631	70.461	71.336	-0.21425					42	20	4	0	0	0	0.011429	3	8268	8245;8254;8268		169.65	89.198	1	1510100			64108	1487	45139	45204	69362;69363;69364	69364					-0.06724988949804356
QSDQVLWYL	9	Unmodified	_QSDQVLWYL_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.3287353515625	2	576.290214	1150.56587	-1.3251	-0.00076367	-2.7547	-0.0015875	-4.0799	-0.0023512	576.7877404469823	65	0.7272	64.798	64.539	65.266	-0.20254					23	17	2	0	0	0	0.024523	1	7385	7385		29.15	9.1528	1	867610	+		64109	20134	45140	45205	69365	69365					-0.0033857824789720325
QSDTQWHF	8	Unmodified	_QSDTQWHF_					0	0	0		ENST00000263063.8_1_10:30602298-30602421:-|nuORF	ENST00000263063.8_1_10:30602298-30602421:-|nuORF	ENST00000263063.8_1_10:30602298-30602421:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2691040039062	2	524.727781	1047.44101	-0.69218	-0.0003632	-3.6666	-0.001924	-4.3588	-0.0022872	524.7256723883539	34.322	1.2994	34.372	33.648	34.947	0.050255					40	32	2	0	0	0	0.027866	1	2582	2582		17.365	1.7232	1	83815			64110	11517	45141	45206	69366	69366					-0.08081450664440126
QSDTQWHF	8	Unmodified	_QSDTQWHF_					0	0	0		ENST00000263063.8_1_10:30602298-30602421:-|nuORF	ENST00000263063.8_1_10:30602298-30602421:-|nuORF	ENST00000263063.8_1_10:30602298-30602421:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.727781	1047.44101	-1.0893	-0.00057161	-3.2091	-0.0016839	-4.2985	-0.0022555	524.7259456315815	34.587	0.88949	34.587	34.129	35.018	0	0.079776	0.00030967	NaN	17.365	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59321			64111	11517	45141	45206							-0.08081450664440126
QSDTQWHF	8	Unmodified	_QSDTQWHF_					0	0	0		ENST00000263063.8_1_10:30602298-30602421:-|nuORF	ENST00000263063.8_1_10:30602298-30602421:-|nuORF	ENST00000263063.8_1_10:30602298-30602421:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.727781	1047.44101	-0.44712	-0.00023462	-3.6668	-0.0019241	-4.114	-0.0021587	524.7255492687142	34.567	0.93665	34.562	33.908	34.845	-0.0045624	0.055037	-0.00017069	NaN	17.365	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71813			64112	11517	45141	45206							-0.08081450664440126
QSDYFRALY	9	Unmodified	_QSDYFRALY_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.7802734375	2	581.780013	1161.54547	-0.11616	-6.7582E-05	-0.046329	-2.6953E-05	-0.16249	-9.4535E-05	581.7797373539828	63.02	0.71081	62.799	62.547	63.257	-0.22097					34	17	3	0	0	0	0.31037	1	7109	7109		74.255	18.751	1	595230			64113	1849	45142	45207	69367	69367					-0.028837489077204737
QSDYFRALY	9	Unmodified	_QSDYFRALY_					0	0	0		ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	ENSG00000087448|ENST00000381271|KLHL42	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.7843627929688	2	581.780013	1161.54547	-1.1858	-0.0006899	0.23529	0.00013689	-0.95055	-0.00055301	581.7800638987218	62.951	0.58366	62.767	62.573	63.157	-0.18386					24	15	2	0	0	0	0.1158	1	7094	7094		107.01	27.295	1	719210			64114	1849	45142	45207	69368	69368					-0.028837489077204737
QSECADRALS	10	Unmodified	_QSECADRALS_					0	0	0			REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2828369140625	2	540.242938	1078.47132	-1.0789	-0.00058285	1.7961	0.00097036	0.71729	0.00038751	540.2438212563264	42.135	0.60131	41.904	41.614	42.216	-0.23029					35	16	3	0	0	0	0.03519	1	3726	3726		28.081	0	1	399850	+		64115	20519	45143	45208	69369	69369					-0.0647746006154648
QSEFLFKF	8	Unmodified	_QSEFLFKF_					0	0	0		ENST00000316660.6_1_18:57570054-57570195:+|nuORF	ENST00000316660.6_1_18:57570054-57570195:+|nuORF	ENST00000316660.6_1_18:57570054-57570195:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8241577148438	2	523.271293	1044.52803	-0.043603	-2.2816E-05	0.86215	0.00045114	0.81855	0.00042832	523.2693354533214	49.958	0.8947	49.853	49.599	50.494	-0.10558					68	23	5	0	0	0	0.027866	1	5053	5053		68.787	6.6794	1	1023400			64116	12149	45144	45209	69370	69370					0.007549555572722966
QSEIASMLY	9	Oxidation (M)	_QSEIASM(Oxidation (M))LY_		QSEIASM(1)LY		QSEIASM(120)LY	0	0	1		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.2474975585938	2	529.247157	1056.47976	-0.4138	-0.000219	-0.10073	-5.331E-05	-0.51453	-0.00027231	529.2468195124918	58.97	1.1162	58.782	58.431	59.547	-0.18795					79	27	4	0	0	0	0.082191	1	6536	6536		116.9	20.713	1	2619800			64117	9974	45145	45210	69371	69371		417			-0.046219061449164656
QSEIASMLY	9	Oxidation (M)	_QSEIASM(Oxidation (M))LY_		QSEIASM(1)LY		QSEIASM(120)LY	0	0	1		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2466430664062	2	529.247157	1056.47976	-0.036451	-1.9292E-05	-0.56079	-0.0002968	-0.59724	-0.00031609	529.2465583974295	58.882	1.313	58.701	58.386	59.699	-0.18133					84	32	4	0	0	0	0.062622	2	6527	6515;6527		124.08	39.165	1	2469000			64118	9974	45145	45210	69372;69373	69373		417			-0.046219061449164656
QSEIASMLY	9	Oxidation (M)	_QSEIASM(Oxidation (M))LY_		QSEIASM(1)LY		QSEIASM(130)LY	0	0	1		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.2471313476562	2	529.247157	1056.47976	0.56611	0.00029961	-1.3156	-0.00069627	-0.74949	-0.00039666	529.246244778803	59.011	1.3073	58.769	58.461	59.769	-0.24165					69	32	3	0	0	0	0.053401	2	6536	6522;6536		127.46	14.05	1	2669900			64119	9974	45145	45210	69374;69375	69375		417			-0.046219061449164656
QSEIASMLY	9	Unmodified	_QSEIASMLY_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2500610351562	2	521.2497	1040.48485	-0.090205	-4.7019E-05	0.15254	7.9509E-05	0.06233	3.249E-05	521.249717703201	72.001	1.2814	71.726	71.433	72.715	-0.27509					52	30	2	0	0	0	0.28753	2	8433	8433;8446		77.318	14.339	1	4936600			64120	9974	45145	45211	69376;69377	69376					-0.03377602282284897
QSEIASMLY	9	Unmodified	_QSEIASMLY_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2501220703125	2	521.2497	1040.48485	0.55975	0.00029177	-0.31634	-0.00016489	0.24341	0.00012688	521.2493541316098	72.003	1.2374	71.741	71.403	72.641	-0.26199					73	29	4	0	0	0	0.17845	3	8441	8429;8441;8455		93.143	14.339	1	4312100			64121	9974	45145	45211	69378;69379;69380	69379					-0.03377602282284897
QSEIASMLY	9	Unmodified	_QSEIASMLY_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000587317.1_1_19:11277236-11281082:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2504272460938	2	521.2497	1040.48485	0.18302	9.54E-05	0.036354	1.8949E-05	0.21938	0.00011435	521.2495466515932	71.868	1.1018	71.662	71.344	72.446	-0.20614					72	26	4	0	0	0	0.17845	2	8398	8398;8417		93.143	21.848	1	4215900			64122	9974	45145	45211	69381;69382	69381					-0.03377602282284897
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.76904296875	2	518.769114	1035.52368	-0.67367	-0.00034948	0.61381	0.00031843	-0.059856	-3.1052E-05	518.7693249685898	65.865	0.61686	65.651	65.379	65.996	-0.21327					47	14	4	0	0	0	0.014034	1	7553	7553		166.68	58.591	1	6035600			64123	1851	45146	45212	69383	69383					0.007334463437246086
QSELVGQLY	9	Unmodified	_QSELVGQLY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.7691650390625	2	518.769114	1035.52368	-0.34215	-0.0001775	0.30615	0.00015882	-0.036006	-1.8679E-05	518.7691969187422	65.915	0.61266	65.664	65.353	65.966	-0.25112					46	14	4	0	0	0	0.14181	2	7527	7527;7545		101.25	7.2462	1	6168700			64124	1851	45146	45212	69384;69385	69384					0.007334463437246086
QSEMLETIP	9	Unmodified	_QSEMLETIP_					0	0	0		nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000528958.1_1_1:110173262-110173771:+|nuORF	nc|ENSG00000116337|Q01433-5|AMPD2	nc|ENSG00000116337|Q01433-5|AMPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2691040039062	2	524.254982	1046.49541	-1.3021	-0.00068265	-3.5182	-0.0018445	-4.8204	-0.0025271	524.2530999656966	35.218	0.51102	35.218	34.981	35.492	0					25	13	3	0	0	0	0.024436	1	2699	2699		30.504	1.3541	1	305810			64125	3545	45147	45213	69386	69386					-0.025976196278634234
QSEPEKPQD	9	Unmodified	_QSEPEKPQD_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3287963867188	2	529.24346	1056.47237	-0.27498	-0.00014553	0.98012	0.00051872	0.70514	0.00037319	529.245157762896	77.396	1.0388	77.185	76.749	77.787	-0.21087					54	24	4	0	0	0	0.024438	1	9591	9591		44.377	13.874	1	447900			64126	5415	45148	45214	69387	69387					-0.05360922420982206
QSEQGTLAR	9	Unmodified	_QSEQGTLAR_					0	0	0			REV__ENST00000218104.5_1_X:152990328-152990616:+|nuORF	REV__ENST00000218104.5_1_X:152990328-152990616:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.7766418457031	2	495.254163	988.493772	-0.27298	-0.00013519	4.0691	0.0020152	3.7961	0.00188	495.2560185076084	27.401	0.67519	27.244	26.93	27.605	-0.15664					32	15	3	0	0	0	0.024397	1	1523	1523		31.53	0	1	353220	+		64127	29329	45149	45215	69388	69388					-0.0009349260160433914
QSESLELLFP	10	Unmodified	_QSESLELLFP_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	582.2683715820312	2	581.803154	1161.59175	-0.82455	-0.00047972	1.6378	0.0009529	0.81328	0.00047317	581.8041084646998	63.717	0.96803	63.525	63.109	64.077	-0.19243					46	24	2	0	0	0	0.03519	1	7212	7212		37.812	0	1	3947100	+		64128	20826	45150	45216	69389	69389					0.017422712037159727
QSEVMQWLV	9	Unmodified	_QSEVMQWLV_					0	0	0			REV__nc|ENSG00000154370|Q96F44-3|TRIM11	REV__nc|ENSG00000154370|Q96F44-3|TRIM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.819091796875	2	560.278792	1118.54303	-0.71067	-0.00039817	0.90543	0.00050729	0.19477	0.00010912	560.2792079210666	61.084	0.93473	60.871	60.196	61.131	-0.2134					35	24	2	0	0	0	0.024457	1	6960	6960		29.15	11.682	1	176270	+		64129	36799	45151	45217	69390	69390					-0.011499206370217507
QSFEFEMPF	9	Unmodified	_QSFEFEMPF_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	580.806884765625	2	581.2497	1160.48485	-0.33194	-0.00019294	4.3037	0.0025015	3.9718	0.0023086	581.251688121536	49.508	0.52927	49.328	49.078	49.607	-0.18071					21	13	2	0	0	0	0.024457	1	4987	4987		21.96	2.8564	1	247390	+		64130	21072	45152	45218	69391	69391					-0.0889760228230898
QSFFIEHTK	9	Unmodified	_QSFFIEHTK_					0	0	0			REV__ENST00000498087.5_1_9:4635336-4666491:-|nuORF	REV__ENST00000498087.5_1_9:4635336-4666491:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.3111572265625	2	568.790381	1135.56621	-0.3395	-0.0001931	1.0018	0.00056982	0.66232	0.00037672	568.7904968767073	52.049	0.80697	51.93	51.319	52.126	-0.11875					20	12	2	0	0	0	0.024466	1	5398	5398		18.262	0	1	381440	+		64131	33574	45153	45219	69392	69392					0.003848414719413995
QSFFILFY	8	Unmodified	_QSFFILFY_					0	0	0			REV__ENST00000533739.1_1_11:89951170-89956122:-|nuORF	REV__ENST00000533739.1_1_11:89951170-89956122:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2383422851562	2	532.776211	1063.53787	-0.60826	-0.00032407	-3.2457	-0.0017292	-3.8539	-0.0020533	532.7742718835601	40.185	0.41813	39.96	39.696	40.114	-0.225					17	10	2	0	0	0	0.027866	1	3462	3462		28.254	0	1	540290	+		64132	34619	45154	45220	69393	69393					0.008641435626714156
QSFISAPQR	9	Unmodified	_QSFISAPQR_					0	0	0			REV__ENST00000334232.8_2_1:236557647-236557761:+|nuORF	REV__ENST00000334232.8_2_1:236557647-236557761:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2738647460938	2	517.274898	1032.53524	-0.66843	-0.00034576	-0.47855	-0.00024754	-1.147	-0.0005933	517.2746353874603	45.251	1.5397	45.295	44.894	46.433	0.04388					132	44	7	0	0	0	0.32811	1	4386	4386		71.877	4.3838	1	34958000	+		64133	30513	45155	45221	69394	69394					0.02027688157704688
QSFKDPYK	8	Unmodified	_QSFKDPYK_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7579650878906	2	506.758549	1011.50255	-0.46066	-0.00023344	0.015668	7.9397E-06	-0.44499	-0.0002255	506.7584187708438	27.86	1.7207	27.615	27.203	28.924	-0.24524					128	40	4	0	0	0	0.27613	1	1626	1626		122.18	20.575	1	2417700	+		64134	27818	45156	45222	69395	69395					-0.0027451896515913177
QSFLKTAR	8	Unmodified	_QSFLKTAR_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.7846374511719	2	475.774534	949.534515	0.28065	0.00013353	2.0317	0.00096662	2.3123	0.0011001	475.77527288256294	34.562	0.31981	34.338	34.179	34.499	-0.22412					11	7	2	0	0	0	0.027866	1	2564	2564		3.1592	0	1	44664			64135	2166	45157	45223	69396	69396					0.057728935086515776
QSFLNVRNW	9	Unmodified	_QSFLNVRNW_					0	0	0		nc|ENSG00000069974|P51159-2|RAB27A;ENSG00000041353|ENST00000262094|RAB27B;ENSG00000069974|ENST00000336787|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.293212890625	2	582.301447	1162.58834	-0.46793	-0.00027248	0.27822	0.00016201	-0.18971	-0.00011047	582.3013927422467	65.428	1.225	65.187	64.883	66.108	-0.24145					40	29	2	0	0	0	0.48817	1	7475	7475		60.118	8.9256	1	1405300			64136	1070	45158	45224	69397	69397					0.013550659403563259
QSFLNVRNW	9	Unmodified	_QSFLNVRNW_					0	0	0		nc|ENSG00000069974|P51159-2|RAB27A;ENSG00000041353|ENST00000262094|RAB27B;ENSG00000069974|ENST00000336787|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.2930297851562	2	582.301447	1162.58834	-2.126	-0.0012379	1.8462	0.0010751	-0.27972	-0.00016288	582.3023415944976	65.382	0.82255	65.176	64.855	65.677	-0.20623					34	19	2	0	0	0	0.14181	1	7477	7477		101.25	43.006	1	1538600			64137	1070	45158	45224	69398	69398					0.013550659403563259
QSFLNVRNW	9	Unmodified	_QSFLNVRNW_					0	0	0		nc|ENSG00000069974|P51159-2|RAB27A;ENSG00000041353|ENST00000262094|RAB27B;ENSG00000069974|ENST00000336787|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	nc|ENSG00000069974|P51159-2|RAB27A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.2907104492188	2	582.301447	1162.58834	-1.0041	-0.00058466	0.80219	0.00046711	-0.20187	-0.00011755	582.3017665046644	65.419	0.90046	65.168	64.905	65.806	-0.25112					34	21	2	0	0	0	0.14024	1	7464	7464		101.6	37.393	1	1436100			64138	1070	45158	45224	69399	69399					0.013550659403563259
QSFLPDYVW	9	Unmodified	_QSFLPDYVW_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.777587890625	2	577.779482	1153.54441	0.019366	1.1189E-05	-3.7773	-0.0021825	-3.758	-0.0021713	577.7772127413746	46.525	0.8941	46.428	46.152	47.046	-0.096649					74	24	4	0	0	0	0.16468	1	4481	4481		96.19	13.36	1	5072600	+		64139	21049	45159	45225	69400	69400					-0.026219632766469658
QSFLPDYVW	9	Unmodified	_QSFLPDYVW_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.7783203125	2	577.779482	1153.54441	-0.47443	-0.00027411	-3.5393	-0.0020449	-4.0137	-0.002319	577.7773842882794	46.849	0.97045	46.58	46.267	47.238	-0.26939					79	26	5	0	0	0	0.15029	1	4512	4512		99.375	7.136	1	6437400	+		64140	21049	45159	45225	69401	69401					-0.026219632766469658
QSFPHGPPK	9	Unmodified	_QSFPHGPPK_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7455139160156	2	497.758884	993.503215	-0.051125	-2.5448E-05	-1.4093	-0.00070151	-1.4605	-0.00072696	497.75833563131556	74.922	0.23648	74.932	74.815	75.051	0.010376					6	5	2	0	0	0	0.024457	1	9113	9113		29.15	16.943	1	109540	+		64141	23331	45160	45226	69402	69402					0.006203204745702351
QSFPPRLL	8	Unmodified	_QSFPPRLL_					0	0	0			REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2817687988281	2	479.279452	956.544351	0.43898	0.00021039	3.0389	0.0014565	3.4779	0.0016669	479.2807761633834	20.443	0.68604	20.275	20.002	20.688	-0.16774					26	13	3	0	0	0	0.6248	1	558	558		73.975	7.5455	1	455590	+		64142	29249	45161	45227	69403	69403					0.0643408151404401
QSFSRQAPL	9	Unmodified	_QSFSRQAPL_					0	0	0		ENST00000423427.1_2_3:173322189-173322285:+|nuORF	ENST00000423427.1_2_3:173322189-173322285:+|nuORF	ENST00000423427.1_2_3:173322189-173322285:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2738647460938	2	517.274898	1032.53524	-0.6858	-0.00035475	-0.61572	-0.0003185	-1.3015	-0.00067325	517.2745465631918	45.262	1.5497	45.262	44.862	46.412	0					140	44	6	0	0	0	0.29158	1	4393	4393		76.774	1.7308	1	35559000			64143	14024	45162	45228	69404	69404					0.02027688157704688
QSGFAYHLF	9	Unmodified	_QSGFAYHLF_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.8153686523438	2	535.258717	1068.50288	-0.17223	-9.2187E-05	-0.34782	-0.00018618	-0.52005	-0.00027836	535.257674988697	71.805	0.47961	71.543	71.322	71.801	-0.26199					14	11	2	0	0	0	0.024511	1	8405	8405		32.812	13.452	1	112740			64144	4576	45163	45229	69405	69405					-0.028630992453145154
QSGLRSWR	8	Unmodified	_QSGLRSWR_					0	0	0		ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.295166015625	2	495.267407	988.520262	-0.78865	-0.00039059	3.8648	0.0019141	3.0761	0.0015235	495.2692009658598	53.368	0.58235	53.22	52.91	53.493	-0.14723					27	15	2	0	0	0	0.027866	1	5733	5733		29.15	7.1897	1	650010			64145	12071	45164	45230	69406	69406					0.025542410803723214
QSGPARQAL	9	Unmodified	_QSGPARQAL_					0	0	0			REV__ENST00000589786.5_1_19:34303872-34304274:+|nuORF	REV__ENST00000589786.5_1_19:34303872-34304274:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2722473144531	2	464.253966	926.493378	0.67081	0.00031142	2.8735	0.001334	3.5443	0.0016455	464.254955649273	19.438	0.62856	19.438	18.972	19.6	0					14	12	2	0	0	0	0.024344	1	395	395		45.972	7.1661	1	35218	+		64146	35682	45165	45231	69407	69407					0.027191324691784757
QSGQKKLVLI	10	Unmodified	_QSGQKKLVLI_					0	0	0		ENST00000496254.5_1_3:52720087-52724795:+|nuORF;nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	ENST00000496254.5_1_3:52720087-52724795:+|nuORF	ENST00000496254.5_1_3:52720087-52724795:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.7319946289062	2	557.353148	1112.69174	-0.54452	-0.00030349	0.26014	0.00014499	-0.28438	-0.0001585	557.3531795226962	32.052	0.47013	31.895	31.651	32.121	-0.15772					24	10	3	0	0	0	0.03519	1	2191	2191		19.104	3.4617	1	285500			64147	7174	45166	45232	69408	69408					0.13990553328176247
QSGSLLARGES	11	Unmodified	_QSGSLLARGES_					0	0	0		ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8038940429688	2	552.785827	1103.5571	-0.86327	-0.0004772	0.45893	0.00025369	-0.40433	-0.00022351	552.7861724010256	25.466	0.24927	25.466	25.403	25.652	0					7	5	2	0	0	0	0.024768	1	1224	1224		45.022	0	1	61031			64148	9872	45167	45233	69409	69409					0.009464481156101101
QSHAQVTW	8	Unmodified	_QSHAQVTW_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7330322265625	2	478.732866	955.451179	-0.48579	-0.00023256	-0.064775	-3.101E-05	-0.55056	-0.00026357	478.73273033935254	39.118	0.72012	38.954	38.659	39.379	-0.16459					52	19	4	0	0	0	0.38451	2	3290	3290;3301		99.375	17.134	1	3096900			64149	5591	45168	45234	69410;69411	69410					-0.028328429391876853
QSHAQVTW	8	Unmodified	_QSHAQVTW_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.732177734375	2	478.732866	955.451179	-0.63689	-0.0003049	-0.35475	-0.00016983	-0.99165	-0.00047473	478.73257451973984	39.202	0.77036	38.979	38.652	39.422	-0.22311					59	20	4	0	0	0	0.38451	1	3294	3294		99.375	14.459	1	3150700			64150	5591	45168	45234	69412	69412					-0.028328429391876853
QSHAQVTW	8	Unmodified	_QSHAQVTW_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.732421875	2	478.732866	955.451179	0.10414	4.9857E-05	-0.95874	-0.00045898	-0.8546	-0.00040912	478.73228861060153	39.171	0.84203	38.945	38.669	39.511	-0.2257					60	22	4	0	0	0	0.38451	2	3293	3277;3293		99.375	9.7701	1	2413500			64151	5591	45168	45234	69413;69414	69414					-0.028328429391876853
QSHFMWFHRNN	11	Unmodified	_QSHFMWFHRNN_					0	0	0			REV__ENSG00000263513|ENST00000584486|FAM72C	REV__ENSG00000263513|ENST00000584486|FAM72C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.28594970703125	3	501.894805	1502.66259	-0.31965	-0.00016043	-3.6285	-0.0018211	-3.9482	-0.0019816	501.8929327656145	63.159	0.32609	62.975	62.83	63.157	-0.18386					14	7	3	0	0	0	0.024809	1	7134	7134		17.167	3.0807	1	149450	+		64152	28812	45169	45235	69415	69415					-0.06863914239738733
QSHFMWFHRNN	11	Unmodified	_QSHFMWFHRNN_					0	0	0			REV__ENSG00000263513|ENST00000584486|FAM72C	REV__ENSG00000263513|ENST00000584486|FAM72C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	501.894805	1502.66259	0.81701	0.00041006	-4.6898	-0.0023538	-3.8727	-0.0019437	502.2267837052736	62.918	0.23822	62.972	62.888	63.126	0.054104	-0.027711	-0.0012177	NaN	17.167	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67431	+		64153	28812	45169	45235							-0.06863914239738733
QSHGRWSGS	9	Unmodified	_QSHGRWSGS_					0	0	0			REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2822265625	2	501.231022	1000.44749	0.1107	5.5486E-05	-3.9472	-0.0019784	-3.8365	-0.001923	501.2288983413884	46.486	0.58591	46.389	45.887	46.473	-0.096649					24	15	2	0	0	0	0.024541	1	4471	4471		21.96	10.449	1	157910	+		64154	34378	45170	45236	69416	69416					-0.052715127130454675
QSHGRWSGS	9	Unmodified	_QSHGRWSGS_					0	0	0			REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.231022	1000.44749	-0.137	-6.8668E-05	-4.0395	-0.0020247	-4.1765	-0.0020934	501.22891845486566	46.61	0.97928	46.349	46.006	46.986	-0.26118	-0.0011885	-0.00034707	NaN	21.96	33	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152610	+		64155	34378	45170	45236							-0.052715127130454675
QSHGRWSGS	9	Unmodified	_QSHGRWSGS_					0	0	0			REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.231022	1000.44749	-0.89264	-0.00044742	-3.2546	-0.0016313	-4.1473	-0.0020787	501.2293284715828	46.508	1.0961	46.312	45.898	46.994	-0.19657	-0.037922	0.00043975	NaN	21.96	39	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137960	+		64156	34378	45170	45236							-0.052715127130454675
QSHLGPKF	8	Unmodified	_QSHLGPKF_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.24957275390625	2	457.248152	912.481751	1.6542	0.00075636	1.9618	0.00089704	3.616	0.0016534	457.2490357431586	16.498	0.18708	16.344	16.222	16.409	-0.15376					14	6	3	0	0	0	1.0574	1	75	75		20.947	1.587	1	36689	+		64157	28831	45171	45237	69417	69417					0.02200935445853247
QSHLNKALW	9	Unmodified	_QSHLNKALW_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2593994140625	2	548.79854	1095.58253	-0.70579	-0.00038734	0.11724	6.4339E-05	-0.58856	-0.000323	548.7985744816541	40.008	0.57647	39.778	39.507	40.083	-0.23021					23	14	2	0	0	0	0.024523	1	3421	3421		21.96	0	1	172600			64158	6563	45172	45238	69418	69418					0.03855967428717122
QSHLRKIL	8	Unmodified	_QSHLRKIL_					0	0	0			REV__ENST00000358731.8_2_5:70754407-70754644:+|nuORF	REV__ENST00000358731.8_2_5:70754407-70754644:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2624816894531	2	497.811451	993.608348	-0.68989	-0.00034344	3.4499	0.0017174	2.76	0.001374	497.8131261363838	56.109	0.66061	55.952	55.713	56.373	-0.15656					30	16	3	0	0	0	0.027866	1	6056	6056		37.159	0	1	622630	+		64159	30862	45173	45239	69419	69419					0.11128861670999868
QSIDALKDW	9	Unmodified	_QSIDALKDW_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;EIF5B|p.F1198L|1|0.06|ENSG00000158417|chr2:99399345-99399345|C/G|missense_variant	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2635498046875	2	538.274564	1074.53457	-0.95358	-0.00051329	1.0973	0.00059066	0.14374	7.737E-05	538.2749993308257	69.403	0.79282	69.135	68.953	69.746	-0.26724					43	18	4	0	0	0	0.0242	1	8074	8074		51.193	11.94	1	685930			64160	6667	45174	45240	69420	69420					0.0002884871798869426
QSIEIKLTY	9	Unmodified	_QSIEIKLTY_					0	0	0			REV__TGM7|p.G244Afs*31|1|0.35|ENSG00000159495|chr15:43287414-43287414|C/-|frameshift_variant	REV__TGM7|p.G244Afs*31|1|0.35|ENSG00000159495|chr15:43287414-43287414|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2869873046875	2	547.808239	1093.60193	-0.49273	-0.00026992	0.72104	0.00039499	0.22832	0.00012507	547.808593341977	47.791	0.69241	47.693	47.384	48.076	-0.097553					37	18	3	0	0	0	0.024319	1	4694	4694		39.253	0	1	482820	+		64161	25261	45175	45241	69421	69421					0.05886878928936312
QSILTGSQY	9	Unmodified	_QSILTGSQY_					0	0	0		nc|ENSG00000109794|A5PLN7-2|FAM149A;nc|ENSG00000109794|A5PLN7-4|FAM149A;ENSG00000109794|ENST00000706927|FAM149A;nc|ENSG00000109794|A5PLN7|FAM149A	nc|ENSG00000109794|A5PLN7-2|FAM149A	nc|ENSG00000109794|A5PLN7-2|FAM149A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77191162109375	2	498.753464	995.492375	1.8001	0.00089782	2.3418	0.001168	4.1419	0.0020658	498.7547555255235	24.719	0.39261	24.538	24.241	24.634	-0.18089					12	8	2	0	0	0	0.023274	1	1047	1047		58.23	0	1	26774			64162	2998	45176	45242	69422	69422					-0.0055512669038080276
QSIMKRVVEK	10	Unmodified	_QSIMKRVVEK_					0	0	0			REV__ENSG00000188522|ENST00000388995|FAM83G	REV__ENSG00000188522|ENST00000388995|FAM83G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.8876953125	3	406.572669	1216.69618	-1.2968	-0.00052726	-1.2908	-0.00052481	-2.5877	-0.0010521	406.57208627324195	34.003	0.54382	33.827	33.545	34.089	-0.17557					30	13	3	0	0	0	0.03519	1	2412	2412		26.75	14.317	1	170830	+		64163	28042	45177	45243	69423	69423					0.09649694479435311
QSIVARLLDV	10	Unmodified	_QSIVARLLDV_					0	0	0			REV__ENST00000522335.5_1_8:144462155-144464818:+|nuORF	REV__ENST00000522335.5_1_8:144462155-144464818:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.3240356445312	2	557.334956	1112.65536	-0.46844	-0.00026108	-0.075586	-4.2127E-05	-0.54403	-0.00030321	557.3347897763069	38.743	0.78109	38.743	38.473	39.254	0					38	20	2	0	0	0	0.03519	1	3261	3261		47.96	0	1	538090	+		64164	25173	45178	45244	69424	69424					0.10353676431441272
QSKETIKY	8	Unmodified	_QSKETIKY_					0	0	0			REV__nc|ENSG00000211720|A0A0K0K1C0|TRBV11-1	REV__nc|ENSG00000211720|A0A0K0K1C0|TRBV11-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7720947265625	2	498.771657	995.528761	1.8025	0.00089903	-2.0808	-0.0010379	-0.27834	-0.00013883	498.77031789802	24.484	0.74038	24.304	23.938	24.678	-0.18089					45	16	4	0	0	0	0.68164	1	1037	1037		68.787	2.9837	1	1385900	+		64165	37101	45179	45245	69425	69425					0.030817502063200664
QSKFHDKQ	8	Unmodified	_QSKFHDKQ_					0	0	0			REV__ENSG00000255009|ENST00000530464|UBTFL1	REV__ENSG00000255009|ENST00000530464|UBTFL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.80517578125	2	509.259248	1016.50394	-0.443	-0.0002256	1.3553	0.00069021	0.91233	0.00046461	509.25990507108247	23.481	0.38575	23.557	23.392	23.778	0.076241					19	8	3	0	0	0	0.027866	1	890	890		37.159	25.648	1	110660	+		64166	29060	45180	45246	69426	69426					-0.0036488487638735023
QSKHLWEVV	9	Unmodified	_QSKHLWEVV_					0	0	0		ENSG00000196693|ENST00000359467|ZNF33B;nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	ENSG00000196693|ENST00000359467|ZNF33B	ENSG00000196693|ENST00000359467|ZNF33B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.732421875	2	563.306198	1124.59784	-0.94388	-0.00053169	4.1637	0.0023454	3.2198	0.0018137	563.3084006491083	51.663	0.34808	51.394	51.163	51.511	-0.26903					14	8	2	0	0	0	0.024541	1	5322	5322		19.997	9.1312	1	129130			64167	9795	45181	45247	69427	69427					0.040528342258767225
QSKLKSIAGY	10	Unmodified	_QSKLKSIAGY_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7723999023438	2	547.813856	1093.61316	-0.57509	-0.00031504	-0.41585	-0.00022781	-0.99094	-0.00054285	547.8134257443744	35.663	0.22096	35.475	35.298	35.519	-0.18872					8	5	2	0	0	0	0.03519	1	2705	2705		31.53	2.3803	1	117430	+		64168	25714	45182	45248	69428	69428					0.0700970102309384
QSKLSLLLL	9	Unmodified	_QSKLSLLLL_					0	0	0			REV__ENST00000338167.9_1_11:129939948-129979396:+|nuORF	REV__ENST00000338167.9_1_11:129939948-129979396:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8306579589844	2	507.831517	1013.64848	-0.10614	-5.39E-05	-0.51663	-0.00026236	-0.62277	-0.00031626	507.83112750359254	46.906	1.0849	46.637	46.379	47.463	-0.26939					81	29	4	0	0	0	0.32811	1	4547	4547		71.877	2.2498	1	3211600	+		64169	30576	45183	45249	69429	69429					0.14220363550907678
QSKNFLVPD	9	Unmodified	_QSKNFLVPD_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.30322265625	2	524.277106	1046.53966	0.68669	0.00036001	2.6777	0.0014039	3.3644	0.0017639	524.2783932821161	88.071	0.71277	88.089	87.87	88.583	0.018555					28	16	2	0	0	0	0.024405	1	10997	10997		35.618	7.736	1	333500			64170	8759	45184	45250	69430	69430					0.01825152580613576
QSKRQYKLCKP	11	Unmodified	_QSKRQYKLCKP_					0	0	0			REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF	REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2685852050781	3	460.258973	1377.75509	-0.24016	-0.00011054	1.0033	0.0004618	0.76319	0.00035126	460.2593298627683	39.578	0.72823	39.414	39.153	39.881	-0.16458					27	18	2	0	0	0	0.024735	1	3432	3432		21.78	0	1	291070	+		64171	30660	45185	45251	69431	69431					0.08132170773774305
QSKRTKLIPE	10	Unmodified	_QSKRTKLIPE_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.576904296875	3	400.575067	1198.70337	0.97804	0.00039178	2.0965	0.0008398	3.0745	0.0012316	400.575601778729	17.776	0.39565	17.633	17.453	17.849	-0.14278					14	7	2	0	0	0	1.1081	1	197	197		31.634	8.1116	1	17818	+		64172	19713	45186	45252	69432	69432					0.11196750351518858
QSKSFPLVPQ	10	Unmodified	_QSKSFPLVPQ_					0	0	0			REV__BIRC6-SPAST|3|fusion	REV__BIRC6-SPAST|3|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7672729492188	2	565.813856	1129.61316	-1.171	-0.00066257	1.7957	0.001016	0.62472	0.00035348	566.317148318713	40.649	0.61604	40.672	40.424	41.04	0.023006					24	17	2	0	0	0	0.03519	1	3592	3592		42.864	10.052	1	190880	+		64173	19209	45187	45253	69433	69433					0.05353701023091162
QSKSPGSSW	9	Unmodified	_QSKSPGSSW_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2303466796875	2	482.230156	962.445759	-1.0863	-0.00052383	1.0831	0.00052231	-0.0031451	-1.5167E-06	482.2305521099302	28.798	1.0675	28.553	28.162	29.229	-0.24524					47	24	3	0	0	0	0.057894	3	1716	1706;1716;1729		125.81	35.037	1	982020			64174	18822	45188	45254	69434;69435;69436	69435					-0.03696566521659861
QSKSPGSSW	9	Unmodified	_QSKSPGSSW_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.230224609375	2	482.230156	962.445759	-0.61791	-0.00029797	0.60771	0.00029306	-0.010192	-4.9147E-06	482.23027979118183	28.642	1.0701	28.473	28.089	29.16	-0.16897					57	24	4	0	0	0	0.1158	2	1680	1680;1691		107.01	38.221	1	977260			64175	18822	45188	45254	69437;69438	69437					-0.03696566521659861
QSKSPGSSW	9	Unmodified	_QSKSPGSSW_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	482.230156	962.445759	-0.28587	-0.00013786	0.36487	0.00017595	0.078995	3.8094E-05	482.2301205497031	28.49	0.74218	28.338	28.04	28.782	-0.15195	-0.11636	-0.00033533	NaN	125.81	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1235100			64176	18822	45188	45254							-0.03696566521659861
QSKSYFGF	8	Unmodified	_QSKSYFGF_					0	0	0			REV__ENSG00000187527|ENST00000342358|ATP13A5	REV__ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.23016357421875	2	482.232168	962.449782	-0.28587	-0.00013786	-3.8061	-0.0018354	-4.092	-0.0019733	482.2301205497031	28.49	0.74218	28.338	28.04	28.782	-0.15195					46	17	4	0	0	0	0.6248	1	1662	1662		73.975	5.1879	1	1235100	+		64177	27939	45189	45255	69439	69439					-0.0329447702795278
QSKTKRVGA	9	Unmodified	_QSKTKRVGA_					0	0	0		nc|ENSG00000236939|P0C853|BAALC-AS2;ENST00000436771.1_1_8:104145257-104153519:-|nuORF	nc|ENSG00000236939|P0C853|BAALC-AS2	nc|ENSG00000236939|P0C853|BAALC-AS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7703857421875	2	487.790715	973.566878	-0.91383	-0.00044576	2.1029	0.0010258	1.1891	0.00058001	487.79178161797387	79.989	0.67096	80.011	79.729	80.4	0.021446					25	15	2	0	0	0	0.024495	1	9836	9836		26.693	0	1	268610			64178	14283	45190	45256	69440	69440					0.07903680911658739
QSKWCRKFES	10	Unmodified	_QSKWCRKFES_					0	0	0			REV__DEFB124|p.G30S|1|0.22|ENSG00000180383|chr20:31465634-31465634|C/T|missense_variant	REV__DEFB124|p.G30S|1|0.22|ENSG00000180383|chr20:31465634-31465634|C/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	433.54852294921875	3	433.548523	1297.62374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.661	1	24.661	24.161	25.161	0								0	0	0	0.76088	1	1094	1094		24.232	3.9168	1		+		64179	19664	45191	45257	69441	69441					-0.013166395941425435
QSKWETDL	8	Unmodified	_QSKWETDL_					0	0	0			REV__nc|ENSG00000158423|Q8N443-3|RIBC1	REV__nc|ENSG00000158423|Q8N443-3|RIBC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.76617431640625	2	503.745639	1005.47673	0.17266	8.6978E-05	0.19726	9.9368E-05	0.36992	0.00018635	503.74554829467877	58.941	0.48618	58.759	58.505	58.991	-0.18133					23	11	3	0	0	0	0.027866	1	6470	6470		23.042	1.0826	1	487320	+		64180	25193	45192	45258	69442	69442					-0.025794132074224763
QSLAAVPTLEP	11	Unmodified	_QSLAAVPTLEP_					0	0	0		ENSG00000178826|ENST00000359333|TMEM139;ENST00000480421.5_1_7:142982055-142983919:+|nuORF	ENSG00000178826|ENST00000359333|TMEM139	ENSG00000178826|ENST00000359333|TMEM139	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.3128662109375	2	563.311146	1124.60774	-0.35166	-0.00019809	3.5456	0.0019973	3.194	0.0017992	563.3127039485594	96.759	0.9688	96.598	96.25	97.219	-0.16106					48	21	3	0	0	0	0.73399	1	11956	11956		61.691	4.9702	1	203190			64181	8839	45193	45259	69443	69443					0.050419774406236684
QSLDLAVERGL	11	Unmodified	_QSLDLAVERGL_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.90325927734375	3	400.890944	1199.651	0.12663	5.0763E-05	0.081055	3.2494E-05	0.20768	8.3258E-05	400.89030221028185	51.317	0.29032	51.168	51.044	51.335	-0.14916					12	7	2	0	0	0	0.024194	1	5422	5422		66.92	8.2906	1	50785	+		64182	22273	45195	45260	69444	69444					0.05916167217901602
QSLEEVKSSI	10	Unmodified	_QSLEEVKSSI_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.298828125	2	560.298236	1118.58192	0.63244	0.00035435	0.1436	8.0459E-05	0.77604	0.00043481	560.2984012798627	19.266	0.74295	19.066	18.612	19.355	-0.2001					37	14	3	0	0	0	0.47897	1	400	400		90.601	10.888	1	926210	+		64183	26756	45196	45261	69445	69445					0.027370831983489552
QSLEEVKSSI	10	Unmodified	_QSLEEVKSSI_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	560.298236	1118.58192	1.021	0.00057207	6.9386	0.0038877	7.9596	0.0044598	560.3018980990614	19.208	0.39352	19.208	19.021	19.414	0	-0.0076957	0.0066981	NaN	90.601	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24379	+		64184	26756	45196	45261							0.027370831983489552
QSLEEVKSSI	10	Unmodified	_QSLEEVKSSI_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	560.298236	1118.58192	-0.38676	-0.0002167	9.2884	0.0052042	8.9016	0.0049876	560.3030828016476	19.442	0.39362	19.323	19.101	19.495	-0.11872	0.10801	0.0093312	NaN	90.601	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26214	+		64185	26756	45196	45261							0.027370831983489552
QSLEEVKSSI	10	Unmodified	_QSLEEVKSSI_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.298236	1118.58192	2.4757	0.0013871	6.4361	0.0036061	8.9118	0.0049933	560.3016618755707	19.411	0.39584	19.477	19.291	19.687	0.066195	0.26225	0.006135	NaN	90.601	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27090	+		64186	26756	45196	45261							0.027370831983489552
QSLEEVKSSI	10	Unmodified	_QSLEEVKSSI_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.298236	1118.58192	1.5606	0.0008744	0.014924	8.3616E-06	1.5755	0.00088276	560.2979959649089	19.236	0.44624	19.002	18.878	19.325	-0.23345	-0.21285	-0.0010606	NaN	90.601	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15189	+		64187	26756	45196	45261							0.027370831983489552
QSLERDSNP	9	Unmodified	_QSLERDSNP_					0	0	0		ENST00000287169.7_1_11:57440401-57440632:+|nuORF	ENST00000287169.7_1_11:57440401-57440632:+|nuORF	ENST00000287169.7_1_11:57440401-57440632:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2861938476562	2	523.249077	1044.4836	-0.83801	-0.00043849	4.4852	0.0023469	3.6472	0.0019084	523.2511690836097	34.77	0.57231	34.749	34.513	35.085	-0.021767					19	14	2	0	0	0	0.024541	1	2584	2584		23.523	3.5259	1	93669			64188	11763	45197	45262	69446	69446					-0.0368610032687684
QSLFSLQSF	9	Unmodified	_QSLFSLQSF_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.316650390625	2	528.771657	1055.52876	-0.32383	-0.00017123	3.3525	0.0017727	3.0287	0.0016015	528.7732178130262	36.552	0.51542	36.347	36.091	36.606	-0.20518					31	12	3	0	0	0	0.023654	1	2869	2869		66.962	1.1587	1	917660			64189	4948	45198	45263	69447	69447					0.00321750206330762
QSLGKLLAPPL	11	Unmodified	_QSLGKLLAPPL_					0	0	0			REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8534545898438	2	568.855524	1135.69649	-0.25628	-0.00014578	-3.6319	-0.0020661	-3.8882	-0.0022118	568.8533241327464	101.1	1.4966	101.11	100.79	102.28	0.0090332					103	34	5	0	0	0	1.0344	1	12885	12885		29.17	1.2878	1	8744300	+		64190	29847	45199	45264	69448	69448					0.13407437470914374
QSLGKLLAPPL	11	Unmodified	_QSLGKLLAPPL_					0	0	0			REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.8535766601562	2	568.855524	1135.69649	-0.46285	-0.00026329	-3.4276	-0.0019498	-3.8904	-0.0022131	568.8534480412821	101.18	1.7422	101.17	100.85	102.59	-0.0054398					103	39	5	0	0	0	0.97926	1	12858	12858		41.427	2.1738	1	8581000	+		64191	29847	45199	45264	69449	69449					0.13407437470914374
QSLGKLLAPPL	11	Unmodified	_QSLGKLLAPPL_					0	0	0			REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.8532104492188	2	568.855524	1135.69649	0.53704	0.0003055	-4.4255	-0.0025175	-3.8885	-0.002212	568.8529077944462	101.24	1.8533	101.1	100.77	102.62	-0.13156					114	42	5	0	0	0	0.93459	1	12568	12568		49.536	10.283	1	7301700	+		64192	29847	45199	45264	69450	69450					0.13407437470914374
QSLGKRKV	8	Unmodified	_QSLGKRKV_					0	0	0			REV__ENSG00000114790|ENST00000465093|ARHGEF26	REV__ENSG00000114790|ENST00000465093|ARHGEF26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2685852050781	2	458.290351	914.566149	-0.28298	-0.00012969	3.479	0.0015944	3.196	0.0014647	458.2927009346839	39.946	0.52474	39.797	39.591	40.116	-0.1497					23	13	3	0	0	0	0.027866	1	3432	3432		31.955	1.4512	1	400110	+		64193	22144	45200	45265	69451	69451					0.10544886262607633
QSLGLPPL	8	Unmodified	_QSLGLPPL_					0	0	0			REV__ENSG00000196313|ENST00000434423|POM121	REV__ENSG00000196313|ENST00000434423|POM121	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.7461853027344	2	412.747453	823.480354	-0.24401	-0.00010072	-2.7496	-0.0011349	-2.9936	-0.0012356	412.7462093954923	84.44	1.6819	84.368	83.7	85.382	-0.072769					103	39	4	0	0	0	1.0338	1	10552	10552		31.955	0	1	6858600	+		64194	28162	45201	45266	69452	69452					0.06155301357091503
QSLGRLCHLD	10	Unmodified	_QSLGRLCHLD_					0	0	0			REV__ENST00000441493.6_1_22:18270970-18271342:-|nuORF	REV__ENST00000441493.6_1_22:18270970-18271342:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.27001953125	2	571.292765	1140.57098	0.89585	0.00051179	-1.2209	-0.00069751	-0.32509	-0.00018572	571.2916174322951	84.837	0.87225	84.679	84.446	85.318	-0.15869					51	20	3	0	0	0	0.03519	1	10279	10279		26.693	0	1	240940	+		64195	32546	45202	45267	69453	69453					0.006314023430377347
QSLHLWNN	8	Unmodified	_QSLHLWNN_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.771484375	2	506.253966	1010.49338	-0.43473	-0.00022008	3.855	0.0019516	3.4203	0.0017315	506.2558680956768	22.627	1.2187	22.552	21.793	23.011	-0.075296					37	25	2	0	0	0	0.027866	1	713	713		10.866	0.68079	1	48970			64196	9112	45203	45268	69454	69454					-0.011448675308201928
QSLHLWNN	8	Unmodified	_QSLHLWNN_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.253966	1010.49338	-0.61893	-0.00031334	4.7465	0.0024029	4.1275	0.0020896	506.2559644029073	22.541	1.3521	22.541	21.771	23.123	0	-0.0054934	0.00052412	NaN	16.473	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40025			64197	9112	45203	45268							-0.011448675308201928
QSLINFQY	8	Unmodified	_QSLINFQY_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7586364746094	2	506.758549	1011.50255	-0.46066	-0.00023344	0.015668	7.9397E-06	-0.44499	-0.0002255	506.7584187708438	27.86	1.7207	27.615	27.203	28.924	-0.24524					128	40	4	0	0	0	0.24001	2	1592	1555;1592		133.81	18.319	1	2417700			64198	8336	45204	45269	69455;69456	69456					-0.002745189651477631
QSLINFQY	8	Unmodified	_QSLINFQY_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7584533691406	2	506.758549	1011.50255	-0.47479	-0.0002406	0.011236	5.6939E-06	-0.46355	-0.00023491	506.7584394372827	27.799	1.4271	27.644	27.268	28.695	-0.15461					107	34	4	0	0	0	0.53593	1	1522	1522		82.241	3.9767	1	2838700			64199	8336	45204	45269	69457	69457					-0.002745189651477631
QSLIVVKRQ	9	Unmodified	_QSLIVVKRQ_					0	0	0			REV__ENST00000494584.5_1_9:134404938-134406489:-|nuORF	REV__ENST00000494584.5_1_9:134404938-134406489:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8154296875	2	535.837665	1069.66078	0.052137	2.7937E-05	-1.8876	-0.0010114	-1.8355	-0.00098351	536.3368432366124	71.474	0.18882	71.474	71.339	71.528	0					5	4	2	0	0	0	0.024541	1	8655	8655		19.997	3.5236	1	179000	+		64200	23142	45205	45270	69458	69458					0.12873400013927494
QSLKEKQLQ	9	Unmodified	_QSLKEKQLQ_					0	0	0		ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	ENSG00000160194|ENST00000354250|NDUFV3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.3060302734375	2	551.316763	1100.61897	-0.73115	-0.00040309	-1.9173	-0.001057	-2.6484	-0.0014601	551.3154777057587	33.445	0.87598	33.445	33.174	34.05	0					57	23	5	0	0	0	0.023274	1	2417	2417		58.23	7.0372	1	5827000			64201	6789	45206	45271	69459	69459					0.07268799534745085
QSLKILDDT	9	Unmodified	_QSLKILDDT_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2965087890625	2	516.782222	1031.54989	-0.24031	-0.00012419	0.8733	0.00045131	0.63299	0.00032712	516.7827488533543	26.941	0.55171	26.773	26.42	26.971	-0.16816					22	12	3	0	0	0	0.024344	1	1402	1402		30.318	0	1	210980	+		64202	22662	45207	45272	69460	69460					0.03537715515176387
QSLKNILFI	9	Unmodified	_QSLKNILFI_					0	0	0			REV__nc|ENSG00000100271|O95922-4|TTLL1	REV__nc|ENSG00000100271|O95922-4|TTLL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3258666992188	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	1.0019	1	12814	12814		19.997	0	1	22988000	+		64203	21077	45208	45273	69461	69461					0.10939479408125408
QSLLFYALP	9	Unmodified	_QSLLFYALP_					0	0	0			REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF	REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3035888671875	2	526.294768	1050.57498	0.15003	7.8958E-05	-0.7247	-0.00038141	-0.57467	-0.00030245	526.2940922941937	72.508	0.3382	72.243	71.961	72.3	-0.26479					9	7	2	0	0	0	0.02435	1	8497	8497		51.335	10.557	1	36518	+		64204	24057	45209	45274	69462	69462					0.05171815108406008
QSLLITEAPLD	11	Unmodified	_QSLLITEAPLD_					0	0	0			REV__AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|16|2|anti-sense	REV__AluJb_dup110334|chr17:75149071-75149375:+|1.294546035354291|0.0376756510949624|5.1|522.0|16|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	600.3011474609375	2	600.329536	1198.64452	-1.4469	-0.0008686	2.5	0.0015008	1.0532	0.00063224	600.8300408933645	60.636	0.31713	60.46	60.28	60.597	-0.1761					10	7	2	0	0	0	0.024727	1	6779	6779		24.519	7.1542	1	92274	+		64205	19111	45210	45275	69463	69463					0.05314229266514303
QSLLNQQL	8	Unmodified	_QSLLNQQL_					0	0	0		ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.8045959472656	2	472.263999	942.513445	-0.062609	-2.9568E-05	1.3356	0.00063074	1.273	0.00060117	472.26461572304765	56.341	0.79605	56.185	55.922	56.718	-0.15601					48	21	3	0	0	0	0.027866	1	6215	6215		125.81	14.166	1	1213500			64206	9333	45211	45276	69464	69464					0.03988883409135724
QSLLNQQL	8	Unmodified	_QSLLNQQL_					0	0	0		ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.263999	942.513445	0.35683	0.00016852	-0.95415	-0.00045061	-0.59733	-0.0002821	472.2638849290747	56.458	0.62118	56.242	55.998	56.619	-0.21607	0.044043	-0.0019415	NaN	125.81	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252090			64207	9333	45211	45276							0.03988883409135724
QSLLNQQL	8	Unmodified	_QSLLNQQL_					0	0	0		ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	ENSG00000184384|ENST00000524717|MAML2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.263999	942.513445	-0.30811	-0.00014551	-0.60872	-0.00028748	-0.91684	-0.00043299	472.26396957018886	56.478	0.67071	56.254	55.99	56.661	-0.2248	0.055856	-0.0016153	NaN	125.81	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246230			64208	9333	45211	45276							0.03988883409135724
QSLLRLQPE	9	Unmodified	_QSLLRLQPE_					0	0	0			REV__ENSG00000121053|ENST00000225371|EPX	REV__ENSG00000121053|ENST00000225371|EPX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.2633056640625	2	542.31148	1082.60841	-0.60032	-0.00032556	0.41514	0.00022513	-0.18519	-0.00010043	542.3115194471867	49.363	0.61197	49.262	48.918	49.529	-0.1008					29	15	3	0	0	0	0.024447	1	4910	4910		32.812	9.2897	1	545810	+		64209	22575	45212	45277	69465	69465					0.07040816880316925
QSLLRLQPE	9	Unmodified	_QSLLRLQPE_					0	0	0			REV__ENSG00000121053|ENST00000225371|EPX	REV__ENSG00000121053|ENST00000225371|EPX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.31148	1082.60841	-0.2467	-0.00013379	0.20498	0.00011116	-0.041728	-2.263E-05	542.3114221032894	49.62	0.46155	49.34	49.123	49.584	-0.27977	0.044018	-0.00013763	NaN	25.574	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	702940	+		64210	22575	45212	45277							0.07040816880316925
QSLLRLQPE	9	Unmodified	_QSLLRLQPE_					0	0	0			REV__ENSG00000121053|ENST00000225371|EPX	REV__ENSG00000121053|ENST00000225371|EPX	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.31148	1082.60841	-0.63117	-0.00034229	0.39749	0.00021556	-0.23368	-0.00012673	542.3115524509104	49.466	0.57249	49.286	48.923	49.495	-0.18071	-0.010247	7.1174E-05	NaN	25.574	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	740210	+		64211	22575	45212	45277							0.07040816880316925
QSLLVEEVLE	10	Unmodified	_QSLLVEEVLE_					0	0	0		nc|ENSG00000213465|P36404-2|ARL2	nc|ENSG00000213465|P36404-2|ARL2	nc|ENSG00000213465|P36404-2|ARL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.7626953125	2	579.816261	1157.61797	-0.27879	-0.00016165	4.332	0.0025118	4.0533	0.0023501	579.8188951753624	39.682	0.42704	39.533	39.319	39.746	-0.1497					16	10	2	0	0	0	0.03519	1	3371	3371		31.53	16.665	1	202360			64212	18710	45213	45278	69466	69466					0.04546540375190489
QSLMEPNSI	9	Unmodified	_QSLMEPNSI_					0	0	0			REV__UBQLN4|p.M190I|1|0.37|ENSG00000160803|chr1:156050462-156050462|C/T|missense_variant	REV__UBQLN4|p.M190I|1|0.37|ENSG00000160803|chr1:156050462-156050462|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3209228515625	2	509.747324	1017.4801	0.43645	0.00022248	3.2597	0.0016616	3.6962	0.0018841	509.74886402104363	69.454	1.3244	69.162	68.713	70.038	-0.29291					53	33	2	0	0	0	0.024283	1	8361	8361		56.434	5.2411	1	338070	+		64213	37753	45214	45279	69467	69467					-0.027944864250798673
QSLPEFGLTY	10	Unmodified	_QSLPEFGLTY_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-3|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.7914428710938	2	577.790047	1153.56554	-0.88641	-0.00051216	0.48763	0.00028175	-0.39879	-0.00023041	577.7902226503788	81.605	0.59122	81.462	81.233	81.824	-0.14249					34	13	3	0	0	0	0.75651	1	9808	9808		63.534	5.2876	1	781760			64214	2310	45215	45280	69468	69468					-0.0050999796776523
QSLPEFGLTY	10	Unmodified	_QSLPEFGLTY_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-3|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	577.790047	1153.56554	0.3035	0.00017536	-0.63341	-0.00036598	-0.3299	-0.00019062	577.7895663488047	81.635	0.67363	81.407	81.188	81.862	-0.22891	-0.02963	-0.00063836	NaN	63.534	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	707810			64215	2310	45215	45280							-0.0050999796776523
QSLPEFGLTY	10	Unmodified	_QSLPEFGLTY_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-3|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.790047	1153.56554	-0.25151	-0.00014532	-0.68365	-0.00039501	-0.93516	-0.00054033	577.7897939163029	81.633	0.66858	81.439	81.05	81.718	-0.19334	0.003298	-0.00069642	NaN	63.534	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733550			64216	2310	45215	45280							-0.0050999796776523
QSLPMQKPY	9	Oxidation (M)	_QSLPM(Oxidation (M))QKPY_		QSLPM(1)QKPY		QSLPM(57)QKPY	0	0	1			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.2766723632812	2	554.278792	1106.54303	-0.20921	-0.00011596	-3.4397	-0.0019066	-3.6489	-0.0020225	554.2767391189351	16.945	0.24229	16.737	16.569	16.812	-0.20777					10	4	3	0	0	0	0.53979	1	111	111		56.721	7.185	1	59037	+		64217	27099	45216	45281	69469	69469		806			-0.005979206370284373
QSLPMQKPY	9	Oxidation (M)	_QSLPM(Oxidation (M))QKPY_					0	0	1			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	554.278792	1106.54303	-0.20921	-0.00011596	-3.4397	-0.0019066	-3.6489	-0.0020225	554.2767391189351	16.945	0.24229	16.737	16.569	16.812	-0.20777	-0.030864	0.00067365	NaN	56.721	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59037	+		64218	27099	45216	45281				806			-0.005979206370284373
QSLPWSSNPP	10	Unmodified	_QSLPWSSNPP_					0	0	0			REV__ENSG00000148734|ENST00000277942|NPFFR1	REV__ENSG00000148734|ENST00000277942|NPFFR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2427368164062	2	556.772188	1111.52982	-0.34195	-0.00019039	-0.60609	-0.00033746	-0.94804	-0.00052785	556.7722483854836	53.544	0.33789	53.347	53.049	53.387	-0.19739					14	8	2	0	0	0	0.03519	1	5604	5604		32.751	0	1	176450	+		64219	24633	45217	45282	69470	69470					-0.021480354247842115
QSLQISAII	9	Unmodified	_QSLQISAII_					0	0	0		nc|ENSG00000149090|Q6UXH9-3|PAMR1;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	nc|ENSG00000149090|Q6UXH9-3|PAMR1	nc|ENSG00000149090|Q6UXH9-3|PAMR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.75677490234375	2	486.78985	971.565146	-0.19722	-9.6003E-05	1.4181	0.00069031	1.2209	0.0005943	486.7903433916072	37.648	0.9122	37.455	37.076	37.988	-0.193					66	24	5	0	0	0	0.024506	1	3007	3007		23.042	2.0956	1	2046400			64220	6061	45218	45283	69471	69471					0.07822627103041668
QSLQKIQKT	9	Unmodified	_QSLQKIQKT_					0	0	0		ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7578735351562	2	537.319306	1072.62406	-0.71384	-0.00038356	-0.58212	-0.00031279	-1.296	-0.00069635	537.3191915689829	39.283	0.40239	39.057	38.839	39.242	-0.2257					17	10	2	0	0	0	0.024541	1	3319	3319		9.1829	6.2535	1	183240			64221	10839	45219	45284	69472	69472					0.09065103397369967
QSLQPLPGR	9	Unmodified	_QSLQPLPGR_					0	0	0		SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|15|2|sense	SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|15|2|sense	SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|15|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.77496337890625	2	498.285266	994.555979	0.36352	0.00018114	-4.0945	-0.0020402	-3.731	-0.0018591	498.28239067427654	101.26	0.51321	101.25	101.02	101.53	-0.0054474					17	11	2	0	0	0	0.0242	1	12853	12853		60.118	0	1	59569			64222	37989	45220	45285	69473	69473					0.05848278537382612
QSLRTQLDA	9	Unmodified	_QSLRTQLDA_					0	0	0			REV__nc|ENSG00000131051|Q14498-2|RBM39	REV__nc|ENSG00000131051|Q14498-2|RBM39	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2794189453125	2	516.277638	1030.54072	-0.083978	-4.3356E-05	3.5885	0.0018526	3.5045	0.0018093	516.2795014912862	55.374	2.0056	55.143	54.638	56.643	-0.23087					101	54	4	0	0	0	0.013337	1	5932	5932		176.44	9.216	1	28861000	+		64223	36654	45221	45286	69474	69474					0.02667366949526695
QSLSRLTPL	9	Unmodified	_QSLSRLTPL_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7724609375	2	507.800749	1013.58694	-0.043249	-2.1962E-05	-0.50227	-0.00025505	-0.54552	-0.00027701	507.8003885830705	33.644	0.83635	33.701	33.423	34.26	0.056568					39	20	4	0	0	0	0.024021	1	2383	2383		40.778	9.2484	1	1802300	+		64224	33403	45222	45287	69475	69475					0.08069431851606623
QSLSSLPLQV	10	Unmodified	_QSLSSLPLQV_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.258544921875	2	536.305864	1070.59717	-0.71634	-0.00038418	0.088503	4.7465E-05	-0.62784	-0.00033671	536.8067927683295	52.563	1.3177	52.655	52.16	53.477	0.091938					87	34	3	0	0	0	0.03519	1	5687	5687		49.536	11.725	1	524410	+		64225	23729	45223	45288	69476	69476					0.06469994786198185
QSLSSLPLQV	10	Unmodified	_QSLSSLPLQV_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.305864	1070.59717	0.16972	9.1024E-05	-0.37402	-0.00020059	-0.2043	-0.00010957	536.8066336530119	52.863	0.32018	52.604	52.443	52.763	-0.25838	-0.025225	-0.00041123	NaN	49.536	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56013	+		64226	23729	45223	45288							0.06469994786198185
QSLSWTVGMS	10	Unmodified	_QSLSWTVGMS_					0	0	0			REV__ENST00000519948.3_1_12:74932986-74933157:+|nuORF	REV__ENST00000519948.3_1_12:74932986-74933157:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2404174804688	2	548.260599	1094.50665	-0.13758	-7.5429E-05	3.5314	0.0019361	3.3938	0.0018607	548.2627052488717	49.446	0.45536	49.264	49.039	49.495	-0.18148					19	11	2	0	0	0	0.03519	1	4986	4986		36.447	14.487	1	177960	+		64227	34280	45224	45289	69477	69477					-0.03682797533747362
QSLTFQLK	8	Unmodified	_QSLTFQLK_					0	0	0			REV__LENG9|p.E442Q|1|0.15|ENSG00000275183|chr19:54462203-54462203|C/G|missense_variant	REV__LENG9|p.E442Q|1|0.15|ENSG00000275183|chr19:54462203-54462203|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.27716064453125	2	482.776742	963.538931	-0.60495	-0.00029206	-2.2792	-0.0011003	-2.8842	-0.0013924	482.77699585876974	25.322	0.94911	25.322	24.83	25.779	0					49	22	4	0	0	0	0.027866	1	1119	1119		40.778	3.6191	1	403450	+		64228	36307	45225	45290	69478	69478					0.05570357931549097
QSLTFQLK	8	Unmodified	_QSLTFQLK_					0	0	0			REV__LENG9|p.E442Q|1|0.15|ENSG00000275183|chr19:54462203-54462203|C/G|missense_variant	REV__LENG9|p.E442Q|1|0.15|ENSG00000275183|chr19:54462203-54462203|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.776742	963.538931	-0.90789	-0.00043831	1.2101	0.00058422	0.30224	0.00014591	482.7770299507063	25.313	0.52234	25.278	24.992	25.515	-0.034395	0.0029749	0.0005066	NaN	40.778	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289070	+		64229	36307	45225	45290							0.05570357931549097
QSLTFQLK	8	Unmodified	_QSLTFQLK_					0	0	0			REV__LENG9|p.E442Q|1|0.15|ENSG00000275183|chr19:54462203-54462203|C/G|missense_variant	REV__LENG9|p.E442Q|1|0.15|ENSG00000275183|chr19:54462203-54462203|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	482.776742	963.538931	0.016761	8.0916E-06	-1.3707	-0.00066174	-1.3539	-0.00065365	482.7760719564217	25.146	0.76659	25.226	24.733	25.499	0.08009	-0.049284	-0.0019853	NaN	40.778	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420970	+		64230	36307	45225	45290							0.05570357931549097
QSLVFLSFF	9	Unmodified	_QSLVFLSFF_					0	0	0			REV__ENST00000326956.11_1_1:54691347-54691953:-|nuORF	REV__ENST00000326956.11_1_1:54691347-54691953:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2816772460938	2	544.294768	1086.57498	-0.01303	-7.0924E-06	-0.53685	-0.0002922	-0.54988	-0.0002993	544.2942946265288	50.628	0.59341	50.517	50.303	50.896	-0.11163					27	15	2	0	0	0	0.024506	1	5206	5206		10.866	0	1	847430	+		64231	30409	45226	45291	69479	69479					0.03515815108426068
QSLWDECEEG	10	Unmodified	_QSLWDECEEG_					0	0	0			REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.2756958007812	2	598.232235	1194.44992	0.074289	4.4442E-05	2.7867	0.0016671	2.861	0.0017115	598.2339168092786	68.649	1.0115	68.418	67.917	68.929	-0.23048					34	24	2	0	0	0	0.03519	1	8000	8000		34.173	6.0911	1	172010	+		64232	35464	45227	45292	69480	69480					-0.13952889880943076
QSLWDECEEG	10	Unmodified	_QSLWDECEEG_					0	0	0			REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	598.232235	1194.44992	-1.0122	-0.00060553	4.2166	0.0025225	3.2044	0.001917	598.2347275548007	68.596	0.85184	68.335	67.98	68.832	-0.26165	-0.014093	0.00073872	NaN	45.972	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175010	+		64233	35464	45227	45292							-0.13952889880943076
QSLWDECEEG	10	Unmodified	_QSLWDECEEG_					0	0	0			REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	REV__ENST00000575695.5_1_16:74709220-74709647:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	598.232235	1194.44992	-0.19468	-0.00011647	3.6868	0.0022056	3.4921	0.0020891	598.2343541859	68.536	1.4152	68.293	67.667	69.082	-0.24277	-0.055443	0.00010478	NaN	45.972	43	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184170	+		64234	35464	45227	45292							-0.13952889880943076
QSLYMGNEP	9	Unmodified	_QSLYMGNEP_					0	0	0		AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant;ENSG00000111254|ENST00000228850|AKAP3	AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7322387695312	2	519.731674	1037.4488	-0.71771	-0.00037302	3.7721	0.0019605	3.0544	0.0015875	519.7334995099085	56.998	0.96044	56.998	56.643	57.603	0					74	26	5	0	0	0	0.42604	1	6388	6388		64.207	2.0999	1	5820400			64235	58	45228	45293	69481	69481					-0.06843059459151846
QSMIKEERDQS	11	Unmodified	_QSMIKEERDQS_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.235107421875	3	450.882119	1349.62453	-0.62008	-0.00027958	-2.7955	-0.0012604	-3.4156	-0.00154	451.2147335851429	28.502	0.1677	28.502	28.362	28.53	0					5	3	2	0	0	0	0.02475	1	1659	1659		36.528	9.7782	1	29539	+		64236	29216	45229	45294	69482	69482					-0.036298897357255555
QSMMCVCMLY	10	Unmodified	_QSMMCVCMLY_					0	0	0			REV__ENST00000463381.5_1_7:150841447-150841501:+|nuORF	REV__ENST00000463381.5_1_7:150841447-150841501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.7333984375	2	604.735676	1207.4568	-0.19953	-0.00012066	-3.1441	-0.0019014	-3.3437	-0.002022	604.7336036213018	85.345	0.87292	85.15	84.848	85.721	-0.19508					44	20	3	0	0	0	0.87795	1	10349	10349		55.504	5.4797	1	824160	+		64237	32932	45230	45295	69483	69483					-0.13863031121559288
QSMMCVCMLY	10	Unmodified	_QSMMCVCMLY_					0	0	0			REV__ENST00000463381.5_1_7:150841447-150841501:+|nuORF	REV__ENST00000463381.5_1_7:150841447-150841501:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.7332763671875	2	604.735676	1207.4568	0.26739	0.0001617	-3.559	-0.0021523	-3.2916	-0.0019906	604.7333268852672	85.293	0.83369	85.155	84.868	85.702	-0.13753					48	19	4	0	0	0	0.96965	1	10330	10330		49.442	5.0644	1	851440	+		64238	32932	45230	45295	69484	69484					-0.13863031121559288
QSMMNCKML	9	Unmodified	_QSMMNCKML_					0	0	0			REV__nc|ENSG00000145016|Q92622-3|RUBCN	REV__nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3192138671875	2	543.234158	1084.45376	0.42993	0.00023355	1.8164	0.00098673	2.2463	0.0012203	543.2350256100382	59.518	0.83585	59.318	58.78	59.616	-0.20016					35	22	2	0	0	0	0.023007	1	6725	6725		76.774	0	1	233330	+		64239	24377	45231	45296	69485	69485					-0.08508538184059944
QSMPFKVSL	9	Unmodified	_QSMPFKVSL_					0	0	0			REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF	REV__ENST00000564747.1_1_16:27472673-27473321:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2573852539062	2	518.778428	1035.5423	-0.40268	-0.0002089	-1.0434	-0.0005413	-1.4461	-0.0007502	518.7766795626277	57.791	0.65808	57.557	57.164	57.822	-0.23363					31	16	4	0	0	0	0.024367	1	6342	6342		44.377	2.9506	1	1509100	+		64240	35256	45232	45297	69486	69486					0.02595284713925139
QSMQPVLMF	9	Unmodified	_QSMQPVLMF_					0	0	0			REV__EPHX2|p.V498M|1|0.11|ENSG00000120915|chr8:27543791-27543791|G/A|missense_variant	REV__EPHX2|p.V498M|1|0.11|ENSG00000120915|chr8:27543791-27543791|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.763671875	2	540.764463	1079.51437	-0.5647	-0.00030537	0.37531	0.00020296	-0.18938	-0.00010241	540.7645142367262	49.686	1.4253	49.686	49.249	50.675	0					129	40	5	0	0	0	0.67687	1	5195	5195		47.657	1.7054	1	5786300	+		64241	36002	45233	45298	69487	69487					-0.022203615378202812
QSMSHHSAGWA	11	Unmodified	_QSMSHHSAGWA_					0	0	0			REV__nc|ENSG00000055917|Q8TB72-2|PUM2	REV__nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	599.2914428710938	2	599.756546	1197.49854	-0.45282	-0.00027158	-2.9446	-0.001766	-3.3974	-0.0020376	599.7549043693489	47.077	0.37167	46.98	46.789	47.161	-0.096649					11	9	2	0	0	0	0.02475	1	4562	4562		42.864	9.3487	1	110200	+		64242	20208	45234	45299	69488	69488					-0.09230931730508019
QSMSHHSAGWA	11	Unmodified	_QSMSHHSAGWA_					0	0	0			REV__nc|ENSG00000055917|Q8TB72-2|PUM2	REV__nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	599.756546	1197.49854	-0.30761	-0.00018449	-2.7913	-0.0016741	-3.0989	-0.0018586	599.7550597146264	47.466	0.33744	47.197	47.013	47.35	-0.26939	0.1086	0.00014398	NaN	42.864	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93808	+		64243	20208	45234	45299							-0.09230931730508019
QSMTCGILL	9	Carbamidomethyl (C),Oxidation (M)	_QSM(Oxidation (M))TC(Carbamidomethyl (C))GILL_	QSMTC(1)GILL	QSM(1)TCGILL	QSMTC(74)GILL	QSM(74)TCGILL	0	1	1		ENST00000463016.1_1_6:110953360-110991653:-|nuORF	ENST00000463016.1_1_6:110953360-110991653:-|nuORF	ENST00000463016.1_1_6:110953360-110991653:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7320556640625	2	519.751553	1037.48855	-0.50283	-0.00026135	-3.3363	-0.001734	-3.8391	-0.0019954	519.7495133314212	56.807	0.62936	56.904	56.616	57.245	0.097271					40	17	3	0	0	0	0.023239	1	6288	6288		74.255	10.949	1	602030			64244	14728	45235	45300	69489	69489	196	512			-0.028692557800695795
QSNEPWTW	8	Unmodified	_QSNEPWTW_					0	0	0			REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2691040039062	2	524.230156	1046.44576	-1.3035	-0.00068331	1.3868	0.000727	0.083334	4.3686E-05	524.2309298715152	35.231	0.24928	35.231	35.093	35.343	0					10	6	2	0	0	0	0.027866	1	2699	2699		31.955	5.2619	1	146270	+		64245	20870	45236	45301	69490	69490					-0.07560566521669898
QSNEPWTW	8	Unmodified	_QSNEPWTW_					0	0	0			REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2692260742188	2	524.230156	1046.44576	-0.47625	-0.00024967	-2.0476	-0.0010734	-2.5238	-0.0013231	524.2288408677582	35.023	0.25195	35.067	34.904	35.156	0.04406					9	6	2	0	0	0	0.027866	1	2591	2591		24.203	13.337	1	111580	+		64246	20870	45236	45301	69491	69491					-0.07560566521669898
QSNEQTDPE	9	Unmodified	_QSNEQTDPE_					0	0	0		nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2692260742188	2	524.2149	1046.41525	-0.4966	-0.00026033	-4.3497	-0.0022802	-4.8463	-0.0025405	524.2121002273939	35.023	0.28798	35.067	34.868	35.156	0.04406					10	7	2	0	0	0	0.024477	1	2591	2591		14.865	0.72775	1	141540			64247	1840	45237	45302	69492	69492					-0.10610389697376377
QSNETALHY	9	Unmodified	_QSNETALHY_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L;ENST00000555923.1_1_14:81955544-81956809:-|nuORF	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.7466430664062	2	531.74617	1061.47779	-0.1995	-0.00010608	4.1085	0.0021847	3.9091	0.0020786	531.7481704992359	80.277	0.54189	80.071	79.843	80.385	-0.20633					31	12	3	0	0	0	0.67687	1	9625	9625		47.657	6.8792	1	536040			64248	1453	45238	45303	69493	69493					-0.050491988385147124
QSNFKIID	8	Unmodified	_QSNFKIID_					0	0	0			REV__nc|ENSG00000111880|O60942-4|RNGTT;REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.74859619140625	2	482.758549	963.502546	0.86992	0.00041996	-0.60691	-0.00029299	0.263	0.00012697	482.7580636720865	58.768	0.8927	58.526	58.044	58.936	-0.24165					46	21	3	0	0	0	0.027866	1	6501	6501		30.504	1.3541	1	718400	+		64249	21956;36567	45239	45304	69494	69494					0.019334810348709652
QSNFRPSTI	9	Unmodified	_QSNFRPSTI_					0	0	0			REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF	REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2621459960938	2	525.272355	1048.53016	-0.081541	-4.2831E-05	2.0317	0.0010672	1.9501	0.0010243	525.2738892481168	55.601	0.50024	55.601	55.427	55.927	0					14	13	2	0	0	0	0.024288	1	6197	6197		52.937	17.318	1	53130	+		64250	31715	45240	45305	69495	69495					0.00783384295095857
QSNINGTLVP	10	Unmodified	_QSNINGTLVP_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.76611328125	2	521.780013	1041.54547	0.082276	4.293E-05	-3.5626	-0.0018589	-3.4803	-0.001816	521.7778626239433	78.206	0.94019	78.05	77.617	78.557	-0.15591					40	21	3	0	0	0	0.03519	1	9381	9381		30.318	2.2362	1	86001			64251	2353	45241	45306	69496	69496					0.026362510922808724
QSNINGTLVP	10	Unmodified	_QSNINGTLVP_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.780013	1041.54547	-0.69373	-0.00036198	-4.6908	-0.0024476	-5.3845	-0.0028095	521.7773801606492	78.222	0.65555	78.222	77.918	78.573	0	0.090814	-0.00040684	NaN	30.318	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130860			64252	2353	45241	45306							0.026362510922808724
QSNINGTLVP	10	Unmodified	_QSNINGTLVP_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.780013	1041.54547	0.59935	0.00031273	-5.6713	-0.0029592	-5.0719	-0.0026464	522.2786544643725	78.347	0.9082	78.155	77.683	78.591	-0.1921	0.023774	-0.00143	NaN	30.318	23	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88452			64253	2353	45241	45306							0.026362510922808724
QSNINGTLVP	10	Unmodified	_QSNINGTLVP_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000092377|ENST00000383032|TBL1Y;TBL1X-GPR143|1|fusion;TBL1X-GPR143|2|fusion	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.780013	1041.54547	0.64671	0.00033744	-4.1069	-0.0021429	-3.4602	-0.0018055	521.7777415417149	78.33	0.8111	78.099	77.709	78.52	-0.23141	-0.032863	0.00020242	NaN	30.318	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73584			64254	2353	45241	45306							0.026362510922808724
QSNKAVFLM	9	Unmodified	_QSNKAVFLM_					0	0	0		ENST00000216039.9_1_22:39081989-39082295:-|nuORF	ENST00000216039.9_1_22:39081989-39082295:-|nuORF	ENST00000216039.9_1_22:39081989-39082295:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7504272460938	2	519.276052	1036.53755	-0.36701	-0.00019058	4.3222	0.0022444	3.9552	0.0020538	519.2781756974964	24.01	0.44943	24.087	23.779	24.228	0.077097					14	9	2	0	0	0	0.024457	1	926	926		21.96	0	1	32998			64255	11152	45242	45307	69497	69497					0.020744005711549107
QSNKKLASL	9	Unmodified	_QSNKKLASL_					0	0	0			REV__ENST00000366955.7_1_1:214818728-214818815:+|nuORF	REV__ENST00000366955.7_1_1:214818728-214818815:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.79449462890625	2	494.792924	987.571294	0.3037	0.00015027	2.4589	0.0012167	2.7626	0.0013669	494.7945194552338	59.475	1.258	59.226	58.615	59.873	-0.24842					90	31	5	0	0	0	0.091713	1	6569	6569		113.41	6.4041	1	7793700	+		64256	30995	45243	45308	69498	69498					0.07701145334567627
QSNLQLRV	8	Unmodified	_QSNLQLRV_					0	0	0			REV__ENST00000483502.2_1_9:39100150-39103828:-|nuORF	REV__ENST00000483502.2_1_9:39100150-39103828:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2776184082031	2	479.277441	956.540328	0.70366	0.00033725	0.44942	0.0002154	1.1531	0.00055264	479.27737502520233	96.231	2.3544	96.108	95.378	97.732	-0.12305					131	53	5	0	0	0	1.043	1	11927	11927		30.504	1.3541	1	1695100	+		64257	21639	45244	45309	69499	69499					0.06031992020314192
QSNRKQFY	8	Unmodified	_QSNRKQFY_					0	0	0			REV__nc|ENSG00000198554|O75717-2|WDHD1	REV__nc|ENSG00000198554|O75717-2|WDHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.773193359375	2	535.772522	1069.53049	-0.38867	-0.00020824	1.6808	0.00090054	1.2922	0.0006923	535.7733080742079	41.568	0.60627	41.432	41.099	41.705	-0.13554					45	15	4	0	0	0	0.78609	1	3673	3673		60.294	0.17569	1	3665900	+		64258	28432	45245	45310	69500	69500					-0.0014919598504548048
QSNRNYYF	8	Unmodified	_QSNRNYYF_					0	0	0			REV__nc|ENSG00000143839|P00797-2|REN	REV__nc|ENSG00000143839|P00797-2|REN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2816772460938	2	546.24888	1090.48321	0.33981	0.00018562	-0.44064	-0.0002407	-0.10082	-5.5074E-05	546.7501714767625	50.953	0.18524	50.841	50.749	50.934	-0.11163					5	4	2	0	0	0	0.027866	1	5206	5206		18.324	0.95945	1	95910	+		64259	36741	45246	45311	69501	69501					-0.05841475256056583
QSNRTASV	8	Unmodified	_QSNRTASV_					0	0	0		ENSG00000165606|ENST00000374139|DRGX	ENSG00000165606|ENST00000374139|DRGX	ENSG00000165606|ENST00000374139|DRGX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	431.7245788574219	2	431.722498	861.430444	1.3154	0.00056787	3.9025	0.0016848	5.2179	0.0022527	431.724053701664	36.146	1.0868	35.948	35.609	36.696	-0.19829					57	28	3	0	0	0	0.50717	1	2784	2784		84.916	2.6105	1	3270200			64260	7436	45247	45312	69502	69502					-0.005814333188482124
QSNVDWLTV	9	Unmodified	_QSNVDWLTV_					0	0	0			REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2899169921875	2	531.266739	1060.51892	-0.53211	-0.00028269	-0.53103	-0.00028212	-1.0631	-0.00056481	531.7676055204658	54.208	0.43192	53.963	53.833	54.265	-0.2453					17	13	2	0	0	0	0.024374	1	5751	5751		40.778	0.20554	1	292340	+		64261	23937	45248	45313	69503	69503					-0.008914377990777211
QSNYYQMPP	9	Unmodified	_QSNYYQMPP_					0	0	0			REV__ENST00000486254.3_1_2:159526197-159533456:+|nuORF;REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.3185424804688	2	564.244949	1126.47534	-0.8051	-0.00045427	-3.5414	-0.0019982	-4.3465	-0.0024525	564.2431084727775	61.862	0.15108	61.684	61.615	61.766	-0.17781					5	3	2	0	0	0	0.024381	1	6942	6942		45.952	1.5748	1	67107	+		64262	24321;33581	45249	45314	69504	69504					-0.08283370567824022
QSNYYQMPP	9	Unmodified	_QSNYYQMPP_					0	0	0			REV__ENST00000486254.3_1_2:159526197-159533456:+|nuORF;REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	564.244949	1126.47534	-0.42395	-0.00023921	-1.8926	-0.0010679	-2.3166	-0.0013071	564.2437246947459	61.529	0.34383	61.529	61.414	61.758	0	-0.042559	0.00049577	NaN	42.396	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148970	+		64263	24321;33581	45249	45314							-0.08283370567824022
QSNYYQMPP	9	Unmodified	_QSNYYQMPP_					0	0	0			REV__ENST00000486254.3_1_2:159526197-159533456:+|nuORF;REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.244949	1126.47534	0.12272	6.9241E-05	-2.6062	-0.0014705	-2.4835	-0.0014013	564.2432181229012	61.729	0.3895	61.502	61.298	61.687	-0.22663	-0.069845	-0.00030951	NaN	42.396	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88414	+		64264	24321;33581	45249	45314							-0.08283370567824022
QSNYYQMPP	9	Unmodified	_QSNYYQMPP_					0	0	0			REV__ENST00000486254.3_1_2:159526197-159533456:+|nuORF;REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.244949	1126.47534	-0.52544	-0.00029647	-2.0142	-0.0011365	-2.5396	-0.001433	564.2436194371047	61.501	0.42456	61.572	61.355	61.779	0.071125	-5.5546E-07	0.00035856	NaN	42.396	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110070	+		64265	24321;33581	45249	45314							-0.08283370567824022
QSPEQMQV	8	Unmodified	_QSPEQMQV_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENSG00000025708|ENST00000252029|TYMP;ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2796630859375	2	473.718567	945.422581	-0.55257	-0.00026176	2.532	0.0011995	1.9794	0.00093769	473.71963312842627	31.632	0.34177	31.48	31.232	31.574	-0.15231					14	8	2	0	0	0	0.027866	1	2075	2075		27.882	21.57	1	63732			64266	988;15085	45250	45315	69505	69505					-0.0523132863063438
QSPEQQRKV	9	Unmodified	_QSPEQQRKV_					0	0	0		ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2692260742188	2	550.296362	1098.57817	-1.0409	-0.00057283	4.149	0.0022832	3.1081	0.0017104	550.2981949528908	65.023	0.60839	64.82	64.577	65.186	-0.20254					20	14	3	0	0	0	0.024319	1	7410	7410		39.253	0	1	226750			64267	6895	45251	45316	69506	69506					0.03282458215130646
QSPEQQRKV	9	Unmodified	_QSPEQQRKV_					0	0	0		ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.296362	1098.57817	-1.0785	-0.00059349	3.019	0.0016614	1.9405	0.0010679	550.7997015211482	64.818	0.52303	64.818	64.46	64.983	0	0.001502	-0.00080196	NaN	52.937	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172830			64268	6895	45251	45316							0.03282458215130646
QSPEQQRKV	9	Unmodified	_QSPEQQRKV_					0	0	0		ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.296362	1098.57817	-1.8671	-0.0010275	6.1298	0.0033732	4.2627	0.0023458	550.8023293232649	65.04	0.49503	64.777	64.532	65.027	-0.2626	-0.038899	0.0026217	NaN	52.937	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348890			64269	6895	45251	45316							0.03282458215130646
QSPEQQRKV	9	Unmodified	_QSPEQQRKV_					0	0	0		ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	ENSG00000161835|ENST00000293662|TAMALIN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.296362	1098.57817	-0.97453	-0.00053628	4.884	0.0026877	3.9095	0.0021514	550.2979139047527	64.789	0.71477	64.827	64.403	65.117	0.037376	0.01035	0.0012506	NaN	52.937	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397010			64270	6895	45251	45316							0.03282458215130646
QSPGGLVPEI	10	Unmodified	_QSPGGLVPEI_					0	0	0		ENST00000477220.1_1_19:45836091-45836232:-|nuORF	ENST00000477220.1_1_19:45836091-45836232:-|nuORF	ENST00000477220.1_1_19:45836091-45836232:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.77105712890625	2	498.771657	995.528761	0.43234	0.00021564	-1.7911	-0.00089334	-1.3587	-0.0006777	498.77066535088994	104.85	1.772	104.85	104.16	105.93	0					146	51	5	0	0	0	0.98754	2	13451	13442;13451		47.657	3.5405	1	5167900			64271	15109	45252	45317	69507;69508	69508					0.030817502063428037
QSPHMYVW	8	Oxidation (M)	_QSPHM(Oxidation (M))YVW_		QSPHM(1)YVW		QSPHM(63)YVW	0	0	1			REV__ENSG00000163659|ENST00000295924|TIPARP	REV__ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2385864257812	2	532.236927	1062.4593	-1.0388	-0.00055288	3.5059	0.0018659	2.4671	0.0013131	532.2385917317774	40.248	0.646	40.017	39.697	40.343	-0.23021					51	16	4	0	0	0	0.74904	1	3468	3468		63.306	15.347	1	3673500	+		64272	25613	45253	45318	69509	69509		760			-0.06943032014078199
QSPKRLLSRK	10	Unmodified	_QSPKRLLSRK_					0	0	0		nc|ENSG00000163755|Q969F9-2|HPS3;ENSG00000163755|ENST00000296051|HPS3	nc|ENSG00000163755|Q969F9-2|HPS3	nc|ENSG00000163755|Q969F9-2|HPS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.92279052734375	3	404.922689	1211.74624	0.50474	0.00020438	-0.80421	-0.00032564	-0.29947	-0.00012126	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.1195	1	1435	1435		20.837	0.80668	1	35253000			64273	7140	45254	45319	69510	69510					0.14883565199579607
QSPLARPVA	9	Unmodified	_QSPLARPVA_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7509765625	2	469.774534	937.534515	-0.40573	-0.0001906	2.3319	0.0010955	1.9262	0.00090486	469.77432388861587	30.16	0.41595	30.234	29.962	30.378	0.074314					13	9	2	0	0	0	0.024405	1	1859	1859		27.882	7.4004	1	51946	+		64274	33833	45255	45320	69511	69511					0.0632489350865626
QSPLHAETMV	10	Unmodified	_QSPLHAETMV_					0	0	0			REV__ENSG00000136051|ENST00000332180|WASHC4	REV__ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2428588867188	2	556.773874	1111.53319	-0.50017	-0.00027848	-2.3691	-0.001319	-2.8692	-0.0015975	556.7723273382104	53.489	0.43077	53.358	53.139	53.57	-0.13048					20	11	2	0	0	0	0.03519	1	5621	5621		22.58	0	1	206340	+		64275	23619	45256	45321	69512	69512					-0.01811108642414183
QSPPFFGLPS	10	Unmodified	_QSPPFFGLPS_					0	0	0			REV__ENST00000354670.8_1_15:40398252-40401051:-|nuORF	REV__ENST00000354670.8_1_15:40398252-40401051:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8043212890625	2	538.7742	1075.53385	-0.37731	-0.00020329	-2.0154	-0.0010859	-2.3927	-0.0012891	538.7728406451673	37.474	0.36346	37.474	37.233	37.596	0					8	6	2	0	0	0	0.03519	1	3031	3031		31.53	11.533	1	104350	+		64276	30758	45257	45322	69513	69513					-0.000899459310403472
QSPPFFGLPS	10	Unmodified	_QSPPFFGLPS_					0	0	0			REV__ENST00000354670.8_1_15:40398252-40401051:-|nuORF	REV__ENST00000354670.8_1_15:40398252-40401051:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.7742	1075.53385	-1.6946	-0.000913	1.512	0.00081461	-0.18263	-9.8394E-05	538.7745888117203	37.915	0.17789	37.832	37.671	37.848	-0.082516	0.17905	0.0020351	NaN	18.262	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39185	+		64277	30758	45257	45322							-0.000899459310403472
QSPPFPCSDKG	11	Unmodified	_QSPPFPCSDKG_					0	0	0		ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.7796630859375	2	581.763506	1161.51246	-1.1707	-0.00068104	-1.9525	-0.0011359	-3.1232	-0.001817	581.7608100396761	44.883	0.23605	44.672	44.595	44.831	-0.21109					6	5	2	0	0	0	0.024731	1	4200	4200		35.152	9.7019	1	74778			64278	14043	45258	45323	69514	69514					-0.061836990220854204
QSPQKSFLL	9	Unmodified	_QSPQKSFLL_					0	0	0			REV__ENST00000481107.1_1_17:15928260-15930833:+|nuORF	REV__ENST00000481107.1_1_17:15928260-15930833:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8241577148438	2	524.295299	1046.57605	-0.018605	-9.7543E-06	0.41135	0.00021567	0.39275	0.00020591	524.2954141821183	49.78	0.71519	49.675	49.373	50.088	-0.10558					36	18	3	0	0	0	0.024466	1	5053	5053		31.53	0	1	560930	+		64279	19925	45259	45324	69515	69515					0.05462029477325814
QSPSEVEPVVD	11	Unmodified	_QSPSEVEPVVD_					0	0	0			REV__TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	REV__TOX4|p.R574Kfs*5|1|0.1|ENSG00000092203|chr14:21495306-21495307|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	592.3032836914062	2	593.285325	1184.5561	-1.7323	-0.0010277	2.4177	0.0014344	0.68547	0.00040668	593.286587340869	84.02	0.73045	83.947	83.657	84.387	-0.072769					36	16	3	0	0	0	0.024771	1	10505	10505		42.864	0	1	304860	+		64280	37720	45260	45325	69516	69516					-0.02879811043931113
QSPVLLPHGY	10	Unmodified	_QSPVLLPHGY_					0	0	0			REV__nc|ENSG00000159640|P12821-4|ACE	REV__nc|ENSG00000159640|P12821-4|ACE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.3265991210938	2	555.800749	1109.58694	0.75128	0.00041756	-1.0085	-0.00056051	-0.25719	-0.00014295	555.7998346653835	54.728	0.36403	54.521	54.358	54.722	-0.20613					16	9	2	0	0	0	0.03519	1	5826	5826		24.203	0	1	221600	+		64281	36830	45261	45326	69517	69517					0.0365343185162601
QSPVPRPPALS	11	Unmodified	_QSPVPRPPALS_					0	0	0		ENST00000567648.1_1_16:70721582-70721744:-|nuORF	ENST00000567648.1_1_16:70721582-70721744:-|nuORF	ENST00000567648.1_1_16:70721582-70721744:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.8035888671875	2	574.824755	1147.63496	-0.12782	-7.3476E-05	2.5956	0.001492	2.4678	0.0014185	575.327755929973	70.613	0.42241	70.613	70.526	70.948	0					12	9	2	0	0	0	0.024745	1	8541	8541		27.047	7.9438	1	92774			64282	16963	45262	45327	69518	69518					0.0670450577167685
QSQIKGYVW	9	Unmodified	_QSQIKGYVW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.79296875	2	554.792924	1107.57129	0.12147	6.7388E-05	-0.21011	-0.00011657	-0.088645	-4.918E-05	554.7926760180183	53.146	0.95375	53.019	52.552	53.505	-0.12705					72	24	4	0	0	0	0.12602	1	5558	5558		104.75	49.242	1	2408600			64283	10408	45263	45328	69519	69519					0.021811453345662812
QSQIKGYVW	9	Unmodified	_QSQIKGYVW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.7926635742188	2	554.792924	1107.57129	-0.16211	-8.9936E-05	-0.22034	-0.00012224	-0.38245	-0.00021218	554.7927334451941	53.191	1.0814	53.001	52.348	53.429	-0.18982					74	27	4	0	0	0	0.091713	1	5557	5557		113.41	44.927	1	2755800			64284	10408	45263	45328	69520	69520					0.021811453345662812
QSQKGAYKVM	10	Unmodified	_QSQKGAYKVM_					0	0	0			REV__ENST00000592367.5_3_6:170154074-170154110:+|nuORF	REV__ENST00000592367.5_3_6:170154074-170154110:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.3455810546875	2	570.297516	1138.58048	-1.5489	-0.00088333	1.5984	0.00091154	0.049478	2.8217E-05	570.2974458865475	36.405	1.0083	36.405	35.57	36.578	0					38	27	3	0	0	0	0.03519	1	2773	2773		30.318	0	1	66507	+		64285	35745	45264	45329	69521	69521					0.01673170628578191
QSQKPFIEF	9	Unmodified	_QSQKPFIEF_					0	0	0			REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.27197265625	2	562.292756	1122.57096	-0.53452	-0.00030056	-4.4235	-0.0024873	-4.958	-0.0027879	562.2899109634136	45.316	0.16504	45.105	44.988	45.153	-0.21109					8	4	3	0	0	0	0.024466	1	4264	4264		47.657	12.039	1	128060	+		64286	26639	45265	45330	69522	69522					0.014577256147049411
QSQKQPFPL	9	Unmodified	_QSQKQPFPL_					0	0	0		ENST00000566264.1_1_16:1583578-1583680:+|nuORF	ENST00000566264.1_1_16:1583578-1583680:+|nuORF	ENST00000566264.1_1_16:1583578-1583680:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.780517578125	2	536.792924	1071.57129	-1.1176	-0.00059991	-2.8629	-0.0015368	-3.9805	-0.0021367	536.7911302039449	35.263	0.51284	35.263	35.018	35.531	0					29	13	3	0	0	0	0.024374	1	2726	2726		40.778	11.629	1	502180			64287	16941	45266	45331	69523	69523					0.03837145334568959
QSQLLVNPL	9	Unmodified	_QSQLLVNPL_					0	0	0			REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8284912109375	2	506.295299	1010.57605	0.31684	0.00016041	-0.45187	-0.00022878	-0.13503	-6.8366E-05	506.2951513811713	67.919	0.89201	67.938	67.345	68.237	0.018913					28	22	2	0	0	0	0.024397	1	7983	7983		39.253	0	1	223710	+		64288	26785	45267	45332	69524	69524					0.0711802947733986
QSQNDSLW	8	Unmodified	_QSQNDSLW_					0	0	0			REV__ENSG00000137269|ENST00000370888|LRRC1	REV__ENSG00000137269|ENST00000370888|LRRC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.21954345703125	2	489.219788	976.425024	-0.03947	-1.931E-05	-0.11614	-5.6819E-05	-0.15561	-7.6129E-05	489.21958979938785	29.172	1.3549	29.022	28.657	30.012	-0.14952					65	31	4	0	0	0	0.89627	1	1759	1759		51.335	1.7994	1	1151800	+		64289	23743	45268	45333	69525	69525					-0.0641315690132842
QSQQQPPPPT	10	Unmodified	_QSQQQPPPPT_					0	0	0		ENST00000609041.1_1_20:60581499-60581991:-|nuORF;ENST00000436129.2_1_20:60551226-60583162:-|nuORF;ENSG00000130699|ENST00000252996|TAF4	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	ENST00000609041.1_1_20:60581499-60581991:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8316650390625	2	554.275095	1106.53564	-0.68169	-0.00037784	-2.2335	-0.0012379	-2.9151	-0.0016158	554.274247617977	48.191	0.25485	48.094	48.002	48.257	-0.097553					9	6	2	0	0	0	0.03519	1	4778	4778		19.263	0	1	147500			64290	17600	45269	45334	69526	69526					-0.013369369131169151
QSQQQQYQA	9	Unmodified	_QSQQQQYQA_					0	0	0			REV__ENSG00000146457|ENST00000621533|WTAP	REV__ENSG00000146457|ENST00000621533|WTAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8316650390625	2	554.754527	1107.4945	-0.77529	-0.0004301	4.0052	0.0022219	3.2299	0.0017918	554.7564807580625	48.337	0.50794	48.239	48.039	48.547	-0.097553					21	13	2	0	0	0	0.024427	1	4778	4778		14.137	0	1	647350	+		64291	24493	45270	45335	69527	69527					-0.05494697952576644
QSQQQYAIQM	10	Unmodified	_QSQQQYAIQM_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.2300720214844	3	408.860767	1223.56047	0.3394	0.00013877	3.7935	0.001551	4.1329	0.0016898	408.8622829275303	25.086	0.3434	25.086	24.83	25.173	0					10	7	2	0	0	0	0.03519	1	1129	1129		17.167	3.6588	1	39355	+		64292	26663	45271	45336	69528	69528					-0.04236625102043945
QSQRDVLAD	9	Unmodified	_QSQRDVLAD_					0	0	0			REV__ENST00000582147.1_1_18:334691-500598:-|nuORF	REV__ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2793579101562	2	516.259445	1030.50434	-0.11542	-5.9586E-05	-1.9575	-0.0010106	-2.0729	-0.0010701	516.258843293218	55.268	0.40479	55.062	54.941	55.345	-0.20613					12	11	2	0	0	0	0.018452	1	5914	5914		98.629	0	1	152950	+		64293	25185	45272	45337	69529	69529					-0.009695099471855428
QSQVPHALPF	10	Unmodified	_QSQVPHALPF_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3005981445312	2	562.298373	1122.58219	0.019639	1.1043E-05	-0.46271	-0.00026018	-0.44307	-0.00024914	562.2984934792033	58.367	0.64132	58.177	57.978	58.619	-0.19017					25	15	3	0	0	0	0.85955	1	6409	6409		56.721	3.7844	1	2257200	+		64294	24111	45273	45338	69530	69530					0.02580547708839731
QSREESSHC	9	Unmodified	_QSREESSHC_					0	0	0			REV__ENST00000424789.6_1_17:61489438-61490991:+|nuORF	REV__ENST00000424789.6_1_17:61489438-61490991:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2383422851562	2	531.717087	1061.41962	-0.66848	-0.00035544	1.1293	0.00060045	0.4608	0.00024501	532.2194652328903	40.213	0.18307	40.063	39.933	40.116	-0.1497					6	4	2	0	0	0	0.024457	1	3450	3450		29.15	0	1	92352	+		64295	31571	45274	45339	69531	69531					-0.10863203755457107
QSRFGSWL	8	Unmodified	_QSRFGSWL_					0	0	0		ENST00000347941.4_1_11:64085760-64088497:+|nuORF	ENST00000347941.4_1_11:64085760-64088497:+|nuORF	ENST00000347941.4_1_11:64085760-64088497:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.7799987792969	2	490.751059	979.487565	-0.95632	-0.00046932	4.4028	0.0021607	3.4464	0.0016913	490.7526245661768	27.111	0.16748	26.869	26.744	26.911	-0.24217					5	3	2	0	0	0	0.027866	1	1475	1475		40.573	16.37	1	18084			64296	12573	45275	45340	69532	69532					-0.0029996604248481162
QSRFIQKLL	9	Unmodified	_QSRFIQKLL_					0	0	0			REV__nc|nan|Q8ND61-2|C3orf20	REV__nc|nan|Q8ND61-2|C3orf20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.829345703125	2	566.84549	1131.67643	-0.4885	-0.0002769	-0.023653	-1.3408E-05	-0.51215	-0.00029031	566.8455359391318	65.119	0.32402	64.884	64.687	65.011	-0.2345					12	7	2	0	0	0	0.024438	1	7438	7438		36.447	17.343	1	98615	+		64297	23204	45276	45341	69533	69533					0.11585686530997918
QSRGAKNSVS	10	Unmodified	_QSRGAKNSVS_					0	0	0		nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2684936523438	2	517.272887	1032.53122	-1.0749	-0.00055602	-3.9843	-0.0020609	-5.0591	-0.002617	517.2706814517236	28.443	1.0719	28.198	27.593	28.665	-0.24524					52	25	3	0	0	0	0.6365	1	1631	1631		72.879	1.0018	1	2173900			64298	18622	45277	45342	69534	69534					0.016255986639862385
QSRIVDLY	8	Unmodified	_QSRIVDLY_					0	0	0			REV__ENST00000341285.7_2_4:15614032-15626959:-|nuORF	REV__ENST00000341285.7_2_4:15614032-15626959:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7560729980469	2	497.271824	992.529095	-0.19665	-9.7789E-05	-0.35451	-0.00017629	-0.55116	-0.00027408	497.27146309787764	39.485	0.45193	39.26	39.059	39.511	-0.2257					19	11	2	0	0	0	0.027866	1	3312	3312		17.365	0	1	298630	+		64299	30632	45278	45343	69535	69535					0.03253169926188093
QSRLHAVARL	10	Unmodified	_QSRLHAVARL_					0	0	0			REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	REV__nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.84326171875	2	575.843813	1149.67307	-0.77612	-0.00044693	-0.64929	-0.00037389	-1.4254	-0.00082081	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.118	1	11098	11098		30.318	2.4355	1	6382400	+		64300	37058	45279	45344	69536	69536					0.10422436476960684
QSRLPGPTAR	10	Unmodified	_QSRLPGPTAR_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.8089599609375	2	541.806897	1081.59924	-1.7114	-0.00092722	3.6588	0.0019823	1.9474	0.0010551	541.8085964491825	29.218	1.4056	29.218	28.53	29.936	0					97	34	5	0	0	0	0.59716	1	1785	1785		77.318	16.346	1	2363200			64301	7612	45280	45345	69537	69537					0.06170468314644495
QSRLPGPTAR	10	Unmodified	_QSRLPGPTAR_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	541.806897	1081.59924	-1.1376	-0.00061635	2.7583	0.0014944	1.6207	0.00087809	541.8082200443848	29.22	1.5305	29.223	28.506	30.036	0.0031357	0.049578	-4.2291E-05	NaN	77.318	96	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2398100			64302	7612	45280	45345							0.06170468314644495
QSRLTASSTSW	11	Unmodified	_QSRLTASSTSW_					0	0	0		ENST00000357066.7_1_19:2072329-2072617:-|nuORF	ENST00000357066.7_1_19:2072329-2072617:-|nuORF	ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.2905883789062	2	612.304384	1222.59421	-0.94951	-0.00058139	3.5168	0.0021534	2.5673	0.001572	612.3069673100738	60.395	0.86129	60.219	59.813	60.674	-0.1761					42	21	3	0	0	0	0.024774	1	6784	6784		14.086	0	1	1258300			64303	12687	45281	45346	69538	69538					-0.00817880338604482
QSRLVIPPLAD	11	Unmodified	_QSRLVIPPLAD_					0	0	0			REV__ENST00000471028.1_1_6:31940339-31947204:+|nuORF	REV__ENST00000471028.1_1_6:31940339-31947204:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5720520019531	3	403.571434	1207.69247	0.47636	0.00019225	0.57195	0.00023082	1.0483	0.00042307	403.5716517356722	42.594	1.719	42.471	42.116	43.834	-0.12299					117	45	4	0	0	0	1.017	1	3882	3882		33.039	1.4051	1	5393200	+		64304	28593	45282	45347	69539	69539					0.09693347977236044
QSRLVIPPLAD	11	Unmodified	_QSRLVIPPLAD_					0	0	0			REV__ENST00000471028.1_1_6:31940339-31947204:+|nuORF	REV__ENST00000471028.1_1_6:31940339-31947204:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5718994140625	3	403.571434	1207.69247	0.54672	0.00022064	0.42168	0.00017018	0.96839	0.00039082	403.57158804731324	42.75	1.6081	42.517	42.155	43.763	-0.23262					120	42	4	0	0	0	1.0074	1	3847	3847		35.178	2.4277	1	5880100	+		64305	28593	45282	45347	69540	69540					0.09693347977236044
QSRRESEV	8	Unmodified	_QSRRESEV_					0	0	0		nc|ENSG00000168216|Q9NUN5-2|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-2|LMBRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2610168457031	2	495.751787	989.489021	0.38657	0.00019164	-2.7987	-0.0013875	-2.4122	-0.0011958	495.7498903813797	84.439	0.3387	84.302	84.151	84.49	-0.13789					11	7	2	0	0	0	0.027866	1	10219	10219		27.882	16.371	1	50665			64306	7796	45283	45348	69541	69541					-0.00614376744385936
QSRRLFSKN	9	Unmodified	_QSRRLFSKN_					0	0	0			REV__ENSG00000243978|ENST00000520821|RTL9	REV__ENSG00000243978|ENST00000520821|RTL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.3201904296875	2	568.320171	1134.62579	1.0841	0.00061614	-1.7262	-0.00098102	-0.64203	-0.00036488	568.31933654529	20.261	0.92476	20.065	19.805	20.73	-0.19577					55	18	5	0	0	0	0.67687	1	511	511		47.657	5.2612	1	1731900	+		64307	28994	45284	45349	69542	69542					0.06386157205997733
QSRRLPKT	8	Unmodified	_QSRRLPKT_					0	0	0			REV__ENST00000531401.5_1_11:64850926-64851618:-|nuORF	REV__ENST00000531401.5_1_11:64850926-64851618:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.29766845703125	2	493.298707	984.582862	0.40011	0.00019737	2.5248	0.0012455	2.925	0.0014429	493.2998107629318	84.534	0.74605	84.534	84.171	84.917	0					20	17	2	0	0	0	0.027866	1	10623	10623		24.519	0.99649	1	120000	+		64308	24503	45285	45350	69543	69543					0.08995387148559075
QSRRLPKT	8	Unmodified	_QSRRLPKT_					0	0	0			REV__ENST00000531401.5_1_11:64850926-64851618:-|nuORF	REV__ENST00000531401.5_1_11:64850926-64851618:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.298707	984.582862	-0.69416	-0.00034243	4.4292	0.0021849	3.7351	0.0018425	493.3010603244705	84.495	0.58218	84.422	84.134	84.717	-0.072777	-0.072576	0.001465	NaN	18.262	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83058	+		64309	24503	45285	45350							0.08995387148559075
QSRRLPKT	8	Unmodified	_QSRRLPKT_					0	0	0			REV__ENST00000531401.5_1_11:64850926-64851618:-|nuORF	REV__ENST00000531401.5_1_11:64850926-64851618:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.298707	984.582862	-0.4752	-0.00023442	3.1064	0.0015324	2.6312	0.001298	493.30014244744103	84.501	0.54187	84.528	84.206	84.748	0.026558	0.033148	0.00015999	NaN	18.262	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88553	+		64310	24503	45285	45350							0.08995387148559075
QSRSAPSIW	9	Unmodified	_QSRSAPSIW_					0	0	0			REV__ENST00000559786.1_1_19:42656838-42660162:+|nuORF	REV__ENST00000559786.1_1_19:42656838-42660162:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2798461914062	2	516.267073	1030.51959	-0.24223	-0.00012506	-1.8637	-0.00096215	-2.1059	-0.0010872	516.2662547768145	55.382	0.097198	55.167	55.104	55.201	-0.21551					6	2	3	0	0	0	0.023181	1	5926	5926		71.296	0	1	180570	+		64311	35126	45286	45351	69544	69544					0.005554016406676965
QSRSRSRSH	9	Unmodified	_QSRSRSRSH_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.779296875	2	550.787027	1099.5595	-0.97752	-0.00053841	-3.3836	-0.0018636	-4.3611	-0.002402	550.7843936033427	44.681	0.99866	44.681	44.215	45.214	0					68	28	4	0	0	0	0.024447	1	4370	4370		25.574	9.9322	1	1536300			64312	9561	45287	45352	69545	69545					0.013703413639632345
QSRTVRTTRK	10	Unmodified	_QSRTVRTTRK_					0	0	0		nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	nc|ENSG00000116580|Q3T8J9-3|GON4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.56304931640625	3	411.577582	1231.71092	0.47725	0.00019642	2.8322	0.0011657	3.3095	0.0013621	411.57988332295713	32.704	0.48881	32.511	32.249	32.738	-0.19261					20	11	3	0	0	0	0.03519	1	2241	2241		22.562	7.2285	1	251280			64313	3556	45288	45353	69546	69546					0.10432902671755073
QSRTWRRRWWL	11	Unmodified	_QSRTWRRRWWL_					0	0	0			REV__ENST00000554052.2_2_14:35515721-35519263:+|nuORF	REV__ENST00000554052.2_2_14:35515721-35519263:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3035888671875	3	544.299042	1629.8753	4.2068	0.0022897	-0.65437	-0.00035617	3.5524	0.0019336	544.2984930387636	17.371	0.30142	17.12	16.974	17.276	-0.25049					12	5	3	0	0	0	1.1135	1	150	150		3.6191	2.0961	1	31350	+		64314	29882	45289	45354	69547	69547					0.08555339882400403
QSSDLPRY	8	Unmodified	_QSSDLPRY_					0	0	0		nc|ENSG00000267508|Q96NJ3-2|ZNF285;ENSG00000267508|ENST00000614994|ZNF285	nc|ENSG00000267508|Q96NJ3-2|ZNF285	nc|ENSG00000267508|Q96NJ3-2|ZNF285	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2378845214844	2	483.237981	964.461409	-0.36442	-0.0001761	-1.3998	-0.00067643	-1.7642	-0.00085254	483.237867168085	40.421	1.6805	40.271	39.783	41.464	-0.1497					199	44	7	0	0	0	0.42327	1	3610	3610		94.006	0.81096	1	543700000			64315	10983	45290	45355	69548	69548					-0.022242800046228695
QSSEVARFD	9	Unmodified	_QSSEVARFD_					0	0	0			REV__RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	REV__RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.236083984375	2	519.74617	1037.47779	-0.5218	-0.0002712	2.6274	0.0013656	2.1056	0.0010944	519.7473046119152	28.102	0.44345	27.933	27.728	28.171	-0.16897					13	10	2	0	0	0	0.024506	1	1615	1615		23.042	0	1	75030	+		64316	28472	45291	45356	69549	69549					-0.039451988385280856
QSSFPPNIS	9	Unmodified	_QSSFPPNIS_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7569885253906	2	488.740357	975.46616	-0.42529	-0.00020786	0.34984	0.00017098	-0.07545	-3.6875E-05	488.74040477866714	37.5	0.65421	37.291	36.999	37.653	-0.2092					38	16	4	0	0	0	0.024313	1	2982	2982		42.864	5.0528	1	1039900			64317	3667	45292	45357	69550	69550					-0.022553958618573233
QSSFSEEPPQ	10	Unmodified	_QSSFSEEPPQ_					0	0	0		ENST00000609686.3_1_12:14018972-14019125:-|nuORF	ENST00000609686.3_1_12:14018972-14019125:-|nuORF	ENST00000609686.3_1_12:14018972-14019125:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2962646484375	2	568.248743	1134.48293	0.32011	0.0001819	2.9481	0.0016753	3.2682	0.0018572	568.7513643519792	21.286	0.19335	21.109	21.016	21.209	-0.17721					5	3	2	0	0	0	0.03519	1	664	664		21.686	6.0439	1	17086			64318	17610	45293	45358	69551	69551					-0.07892939766566087
QSSGPGTQLEL	11	Unmodified	_QSSGPGTQLEL_					0	0	0			REV__ENSG00000168334|ENST00000340369|XIRP1	REV__ENSG00000168334|ENST00000340369|XIRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.3239135742188	2	558.78021	1115.54587	-0.75135	-0.00041984	-2.105	-0.0011762	-2.8563	-0.0015961	558.7792927441443	38.681	0.28794	38.681	38.433	38.721	0					8	6	2	0	0	0	0.024783	1	3247	3247		68.846	15.909	1	45663	+		64319	26249	45294	45359	69552	69552					-0.007283739785179932
QSSGPVPE	8	Unmodified	_QSSGPVPE_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.5844421386719	2	400.692875	799.371197	0.9944	0.00039845	2.2561	0.00090401	3.2505	0.0013025	400.69362303904876	25.129	0.59277	24.959	24.737	25.33	-0.17078					18	13	2	0	0	0	0.027866	1	1175	1175		53.351	19.836	1	83782			64320	4218	45295	45360	69553	69553					-0.03651329333047215
QSSLRRFY	8	Unmodified	_QSSLRRFY_					0	0	0			REV__ENSG00000083168|ENST00000265713|KAT6A	REV__ENSG00000083168|ENST00000265713|KAT6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2535400390625	2	528.78289	1055.55123	-0.088609	-4.6855E-05	3.7825	0.0020001	3.6939	0.0019533	528.7845702249404	38.768	0.6632	38.542	38.246	38.909	-0.2257					27	17	2	0	0	0	0.027866	1	3187	3187		53.351	9.2347	1	235120	+		64321	20709	45296	45361	69554	69554					0.02567394394600342
QSSLVPALTDF	11	Unmodified	_QSSLVPALTDF_					0	0	0		ENST00000487637.1_1_6:33384695-33384746:-|nuORF;ENST00000465956.1_1_6:33384429-33385110:-|nuORF;nc|ENSG00000112514|O60888-3|CUTA;ENSG00000112514|ENST00000488034|CUTA;nc|ENSG00000112514|O60888-2|CUTA	ENST00000487637.1_1_6:33384695-33384746:-|nuORF	ENST00000487637.1_1_6:33384695-33384746:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.3300170898438	2	589.308603	1176.60265	-0.7413	-0.00043686	1.6682	0.00098311	0.92694	0.00054625	589.3090488562761	42.029	0.38267	41.798	41.614	41.997	-0.2303					16	10	2	0	0	0	0.024762	1	3724	3724		18.262	0	1	160830			64322	3218	45297	45362	69555	69555					0.021416735779894225
QSSNLATHQ	9	Unmodified	_QSSNLATHQ_					0	0	0		ENSG00000196267|ENST00000682614|ZNF836	ENSG00000196267|ENST00000682614|ZNF836	ENSG00000196267|ENST00000682614|ZNF836	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.28729248046875	2	493.238513	984.462472	0.02618	1.2913E-05	-3.3507	-0.0016527	-3.3245	-0.0016398	493.23703682049006	67.818	0.32187	67.53	67.388	67.71	-0.28834					9	7	2	0	0	0	0.024484	1	8096	8096		37.812	12.237	1	72022			64323	9846	45298	45363	69556	69556					-0.030380656357237967
QSSTAKSATW	10	Unmodified	_QSSTAKSATW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63-LEPREL1|1|fusion;TP63-LEPREL1|2|fusion;chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7617797851562	2	533.76182	1065.50909	-1.4305	-0.00076353	0.42498	0.00022684	-1.0055	-0.00053669	533.7622625217182	29.105	1.2447	28.86	28.491	29.736	-0.24524					91	28	6	0	0	0	0.1333	4	1739	1739;1750;1762;1775		129.42	36.226	1	6664500			64324	1504;18090	45299	45364	69557;69558;69559;69560	69557					-0.021046258044407296
QSSTAKSATW	10	Unmodified	_QSSTAKSATW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63-LEPREL1|1|fusion;TP63-LEPREL1|2|fusion;chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7620849609375	2	533.76182	1065.50909	-0.86478	-0.00046159	0.15981	8.5302E-05	-0.70497	-0.00037628	533.7619236102196	28.923	1.2829	28.754	28.424	29.707	-0.16897					70	29	4	0	0	0	0.031334	5	1719	1707;1719;1731;1744;1756		154.12	49.372	1	6520300			64325	1504;18090	45299	45364	69561;69562;69563;69564;69565	69562					-0.021046258044407296
QSSTAKSATW	10	Unmodified	_QSSTAKSATW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63-LEPREL1|1|fusion;TP63-LEPREL1|2|fusion;chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.76171875	2	533.76182	1065.50909	-0.78207	-0.00041744	0.13937	7.4391E-05	-0.6427	-0.00034305	533.7618932364749	28.799	1.3049	28.65	28.363	29.668	-0.14952					70	30	4	0	0	0	0.1333	5	1675	1675;1683;1695;1707;1721		129.42	47.181	1	7353800			64326	1504;18090	45299	45364	69566;69567;69568;69569;69570	69566					-0.021046258044407296
QSSTGVIKLS	10	Unmodified	_QSSTGVIKLS_					0	0	0		nc|ENSG00000170579|O14490-6|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3209228515625	2	510.290214	1018.56587	0.54071	0.00027592	-1.2276	-0.00062645	-0.68692	-0.00035053	510.28975015733545	69.816	0.44679	69.523	69.348	69.795	-0.29291					14	10	2	0	0	0	0.03519	1	8361	8361		30.318	5.7985	1	157950			64327	18507	45300	45365	69571	69571					0.057334217520860875
QSSVLAVLYLI	11	Unmodified	_QSSVLAVLYLI_					0	0	0		ENST00000487892.1_1_9:113006439-113007258:-|nuORF	ENST00000487892.1_1_9:113006439-113007258:-|nuORF	ENST00000487892.1_1_9:113006439-113007258:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5441589355469	3	402.576185	1204.70673	0.80271	0.00032315	-2.952	-0.0011884	-2.1493	-0.00086526	402.5750768939532	25.103	0.42671	24.933	24.737	25.163	-0.17078					16	9	3	0	0	0	0.024727	1	1146	1146		23.378	6.2112	1	83042			64328	15378	45301	45366	69572	69572					0.11256000405501254
QSSVLAVLYLI	11	Unmodified	_QSSVLAVLYLI_					0	0	0		ENST00000487892.1_1_9:113006439-113007258:-|nuORF	ENST00000487892.1_1_9:113006439-113007258:-|nuORF	ENST00000487892.1_1_9:113006439-113007258:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	402.576185	1204.70673	2.6031	0.001048	-4.222	-0.0016997	-1.6189	-0.00065172	402.5744678974428	25.03	0.21334	25.11	24.961	25.174	0.079912	0.088513	-0.0010968	NaN	23.378	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14959			64329	15378	45301	45366							0.11256000405501254
QSSVLLGF	8	Unmodified	_QSSVLLGF_					0	0	0		ENST00000244769.8_1_6:16305978-16306212:-|nuORF	ENST00000244769.8_1_6:16305978-16306212:-|nuORF	ENST00000244769.8_1_6:16305978-16306212:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.77508544921875	2	425.737086	849.459619	-0.085263	-3.63E-05	2.2388	0.00095315	2.1535	0.00091685	425.73798169206776	43.158	0.41695	42.921	42.719	43.136	-0.23737					15	10	2	0	0	0	0.027866	1	3953	3953		29.15	0	1	82054			64330	11307	45302	45367	69573	69573					0.028867109774296296
QSSVVIFR	8	Unmodified	_QSSVVIFR_					0	0	0		ENSG00000059915|ENST00000020673|PSD	ENSG00000059915|ENST00000020673|PSD	ENSG00000059915|ENST00000020673|PSD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.738525390625	2	468.269084	934.523616	-0.8219	-0.00038487	4.4263	0.0020727	3.6044	0.0016878	468.27108251813155	25.579	1.0254	25.408	25.2	26.226	-0.17151					39	27	2	0	0	0	0.027866	1	1303	1303		35.618	1.4457	1	154470			64331	1228	45303	45368	69574	69574					0.05373491134378128
QSSYREIK	8	Unmodified	_QSSYREIK_					0	0	0		RAD50|p.L901S|1|0.35|ENSG00000113522|chr5:132604983-132604983|T/C|missense_variant	RAD50|p.L901S|1|0.35|ENSG00000113522|chr5:132604983-132604983|T/C|missense_variant	RAD50|p.L901S|1|0.35|ENSG00000113522|chr5:132604983-132604983|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3233642578125	2	505.766906	1009.51926	-0.81968	-0.00041457	0.69319	0.00035059	-0.12649	-6.3974E-05	505.7671937816552	38.691	0.62789	38.691	38.555	39.183	0					23	16	3	0	0	0	0.027866	1	3314	3314		27.882	0	1	780710			64332	19023	45304	45369	69575	69575					0.014879819208204026
QSSYVQLI	8	Unmodified	_QSSYVQLI_					0	0	0			REV__TMPRSS2-HSF2BP|2|fusion	REV__TMPRSS2-HSF2BP|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.23248291015625	2	469.2531	936.491647	-0.077749	-3.6484E-05	0.67854	0.00031841	0.60079	0.00028192	469.25361857530476	25.813	0.3503	25.642	25.457	25.807	-0.17078					16	8	3	0	0	0	0.027866	1	1277	1277		33.516	9.3128	1	148830	+		64333	27630	45305	45370	69576	69576					0.0208607866057946
QSTCVILP	8	Unmodified	_QSTCVILP_					0	0	0		ENST00000594090.5_1_19:50491627-50519408:-|nuORF	ENST00000594090.5_1_19:50491627-50519408:-|nuORF	ENST00000594090.5_1_19:50491627-50519408:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.72979736328125	2	430.730946	859.447339	0.31126	0.00013407	1.2353	0.0005321	1.5466	0.00066617	430.73121649969096	39.081	0.67945	38.855	38.562	39.242	-0.2257					30	18	2	0	0	0	0.027866	1	3283	3283		20.482	1.1219	1	278450			64334	17401	45306	45371	69577	69577					0.011993512427238784
QSTEILKKL	9	Unmodified	_QSTEILKKL_					0	0	0		nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1;ENST00000411828.5_1_21:40547518-40555177:-|nuORF	nc|ENSG00000183527|O95456-2|PSMG1	nc|ENSG00000183527|O95456-2|PSMG1	MSMS	OPSCC_39_ClassI_Rep-3	3	530.3244018554688	2	530.324057	1058.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.07	1	106.07	105.57	106.57	0.00014496								0	0	0	0.66389	1	13539	13539		28.081	2.0181	1				64335	9240	45307	45372	69578	69578					0.10658871682903737
QSTNSPSDRGA	11	Unmodified	_QSTNSPSDRGA_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7830810546875	2	560.254891	1118.49523	-0.45915	-0.00025724	3.9405	0.0022077	3.4814	0.0019504	560.2571742874086	31.034	0.63253	30.848	30.576	31.208	-0.18503					29	15	3	0	0	0	0.024762	1	2001	2001		29.551	2.8578	1	347590	+		64336	26560	45308	45373	69579	69579					-0.05927903303518178
QSTQLPLET	9	Unmodified	_QSTQLPLET_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2277526855469	2	508.766571	1015.51859	-0.40866	-0.00020791	0.10932	5.5618E-05	-0.29934	-0.00015229	508.76496081257324	30.236	0.3854	29.991	29.82	30.205	-0.24415					11	8	2	0	0	0	0.024418	1	1937	1937		37.812	3.639	1	34798	+		64337	26994	45309	45374	69580	69580					0.011451424810957178
QSTVLHLVV	9	Unmodified	_QSTVLHLVV_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7720947265625	2	498.297842	994.581131	1.8275	0.00091064	-3.0874	-0.0015385	-1.2599	-0.00062781	498.2963443101866	24.47	0.43291	24.289	24.028	24.461	-0.18089					20	9	3	0	0	0	0.024477	1	1037	1037		9.7057	0.52274	1	149310	+		64338	26221	45310	45375	69581	69581					0.0836233333996006
QSVAASWAHDT	11	Unmodified	_QSVAASWAHDT_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.8077392578125	2	586.770177	1171.5258	-0.45596	-0.00026754	0.13692	8.0339E-05	-0.31904	-0.0001872	586.7699060631967	75.829	0.38007	75.654	75.429	75.809	-0.17548					16	9	2	0	0	0	0.024741	1	8975	8975		30.318	0	1	55488			64339	6757	45311	45376	69582	69582					-0.05310124918469228
QSVALNRA	8	Unmodified	_QSVALNRA_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.2296142578125	2	429.743234	857.471915	0.35365	0.00015198	3.5315	0.0015176	3.8851	0.0016696	429.7444618246595	42.505	0.36124	42.531	42.393	42.754	0.026012					13	9	2	0	0	0	0.027866	1	3883	3883		37.159	15.199	1	94168	+		64340	28132	45312	45377	69583	69583					0.037477474404568056
QSVALNRA	8	Unmodified	_QSVALNRA_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	429.743234	857.471915	0.0091353	3.9258E-06	5.7306	0.0024627	5.7398	0.0024666	429.7452615207404	42.67	0.28656	42.531	42.345	42.631	-0.13929	0.00015797	0.00060557	NaN	37.159	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75243	+		64341	28132	45312	45377							0.037477474404568056
QSVEESLHS	9	Unmodified	_QSVEESLHS_					0	0	0		ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7818603515625	2	508.238178	1014.4618	-0.43448	-0.00022082	3.5219	0.00179	3.0875	0.0015692	508.2398783070893	42.45	0.71995	42.22	41.797	42.517	-0.23029					40	19	4	0	0	0	0.024477	1	3748	3748		14.865	4.5996	1	373040			64342	10377	45313	45378	69584	69584					-0.04484905075412371
QSVHHSSYL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))QSVHHSSYL_					1	0	0			REV__nc|ENSG00000153037|P09132-3|SRP19	REV__nc|ENSG00000153037|P09132-3|SRP19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.2608032226562	2	550.261988	1098.50942	-0.49706	-0.00027351	0.21615	0.00011894	-0.2809	-0.00015457	550.261966074641	91.349	1.1856	91.225	90.834	92.02	-0.12341					68	27	3	0	0	0	0.29158	1	11224	11224		76.774	7.9873	1	2952800	+		64343	36793	45314	45379	69585	69585					-0.035892060845753804
QSVIFFDY	8	Unmodified	_QSVIFFDY_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.29290771484375	2	509.74765	1017.48075	-0.2648	-0.00013498	0.97116	0.00049505	0.70636	0.00036007	509.74828546627464	53.492	0.37594	53.294	53.011	53.387	-0.19739					11	9	2	0	0	0	0.027866	1	5575	5575		31.955	0	1	84642	+		64344	27683	45315	45380	69586	69586					-0.027293237137200776
QSVIWVPAE	9	Unmodified	_QSVIWVPAE_					0	0	0		nc|ENSG00000000005|Q9H2S6-2|TNMD;nc|ENSG00000000005|Q9H2S6-3|TNMD;ENSG00000000005|ENST00000373031|TNMD	nc|ENSG00000000005|Q9H2S6-2|TNMD	nc|ENSG00000000005|Q9H2S6-2|TNMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7930297851562	2	514.7742	1027.53385	0.17769	9.1469E-05	0.82105	0.00042265	0.99874	0.00051412	514.774242820952	71.737	0.89009	71.531	71.265	72.155	-0.20613					37	21	2	0	0	0	0.024344	1	8404	8404		37.812	4.9991	1	498910			64345	711	45316	45381	69587	69587					0.021180540689329064
QSVKLSIAV	9	Unmodified	_QSVKLSIAV_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.810791015625	2	472.792392	943.570232	0.62577	0.00029586	-0.61046	-0.00028862	0.015316	7.2412E-06	472.79180207180934	21.873	0.38231	21.696	21.445	21.828	-0.17721					10	7	2	0	0	0	0.024539	1	698	698		20.947	11.241	1	15832			64346	674	45317	45382	69588	69588					0.0961893096566655
QSVKLSIAV	9	Unmodified	_QSVKLSIAV_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.792392	943.570232	0.098501	4.6571E-05	-0.2361	-0.00011162	-0.13759	-6.5054E-05	472.79230449956606	22.167	0.23959	22.091	21.89	22.13	-0.075296	0.25134	-0.00031993	NaN	20.947	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9150.7			64347	674	45317	45382							0.0961893096566655
QSVKLSIAV	9	Unmodified	_QSVKLSIAV_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.792392	943.570232	-0.17023	-8.0483E-05	2.9546	0.0013969	2.7843	0.0013164	472.79205125819556	21.923	0.38452	21.733	21.516	21.9	-0.19072	-0.10732	0.0026971	NaN	20.947	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19514			64348	674	45317	45382							0.0961893096566655
QSVLSVNSRY	10	Unmodified	_QSVLSVNSRY_					0	0	0		ENST00000522380.2_1_5:170346486-170397534:+|nuORF	ENST00000522380.2_1_5:170346486-170397534:+|nuORF	ENST00000522380.2_1_5:170346486-170397534:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.7772216796875	2	576.80402	1151.59349	-0.63695	-0.00036739	3.7732	0.0021764	3.1363	0.001809	576.8060261320276	46.957	0.73528	46.763	46.38	47.116	-0.19387					50	20	4	0	0	0	0.03519	1	4517	4517		24.519	3.5723	1	1718600			64349	16025	45318	45383	69589	69589					0.023753250123490943
QSVPVFPAHS	10	Unmodified	_QSVPVFPAHS_					0	0	0		ENSG00000239620|ENST00000465482|PRR20G	ENSG00000239620|ENST00000465482|PRR20G	ENSG00000239620|ENST00000465482|PRR20G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7509765625	2	534.777274	1067.53999	-0.69629	-0.00037236	0.024666	1.3191E-05	-0.67162	-0.00035917	534.7771009544156	40.137	0.55164	39.987	39.707	40.258	-0.1497					35	14	3	0	0	0	0.03519	1	3425	3425		44.377	0	1	1352800			64350	10761	45319	45384	69590	69590					0.008925723004722386
QSVQTHLLL	9	Unmodified	_QSVQTHLLL_					0	0	0			REV__ENST00000369425.5_1_10:113915595-113915829:-|nuORF	REV__ENST00000369425.5_1_10:113915595-113915829:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2877197265625	2	519.800749	1037.58694	-0.80028	-0.00041599	-1.5296	-0.00079509	-2.3299	-0.0012111	519.7997802135152	36.179	0.16896	36.217	36.065	36.234	0.038044					8	4	2	0	0	0	0.024495	1	2767	2767		34.173	8.5985	1	315350	+		64351	31089	45320	45385	69591	69591					0.06965431851631365
QSVQTLSLW	9	Unmodified	_QSVQTLSLW_					0	0	0		ENST00000590898.5_1_18:33620811-33647397:-|nuORF;ENSG00000141425|ENST00000399022|RPRD1A;RPRD1B|p.A139Qfs*8|1|0.13|ENSG00000101413|chr20:38048472-38048472|C/-|frameshift_variant;ENSG00000101413|ENST00000373433|RPRD1B	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2850341796875	2	531.284931	1060.55531	0.276	0.00014664	0.19372	0.00010292	0.46972	0.00024956	531.2848872331314	80.001	0.66799	79.755	79.447	80.115	-0.2465					34	15	3	0	0	0	0.28753	1	9580	9580		77.318	7.69	1	628540			64352	5489	45321	45386	69592	69592					0.027454390976799914
QSVQTLSLW	9	Unmodified	_QSVQTLSLW_					0	0	0		ENST00000590898.5_1_18:33620811-33647397:-|nuORF;ENSG00000141425|ENST00000399022|RPRD1A;RPRD1B|p.A139Qfs*8|1|0.13|ENSG00000101413|chr20:38048472-38048472|C/-|frameshift_variant;ENSG00000101413|ENST00000373433|RPRD1B	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	ENST00000590898.5_1_18:33620811-33647397:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2850952148438	2	531.284931	1060.55531	-0.22919	-0.00012177	0.47571	0.00025274	0.24652	0.00013097	531.285033991926	79.971	1.4597	79.751	78.994	80.454	-0.21923					42	16	3	0	0	0	0.2101	1	9588	9588		87.696	10.379	1	489740			64353	5489	45321	45386	69593	69593					0.027454390976799914
QSVSTKGWND	10	Unmodified	_QSVSTKGWND_					0	0	0			REV__ENSG00000182010|ENST00000373789|RTKN2	REV__ENSG00000182010|ENST00000373789|RTKN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3118286132812	2	561.264727	1120.5149	-0.85966	-0.0004825	3.8158	0.0021417	2.9562	0.0016592	561.266747869269	51.992	0.3909	52.084	51.93	52.321	0.091938					16	9	2	0	0	0	0.03519	1	5455	5455		22.58	0	1	141530	+		64354	27443	45322	45387	69594	69594					-0.0405352729274
QSVTRLAAHMA	11	Unmodified	_QSVTRLAAHMA_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	592.2764282226562	2	592.813864	1183.61318	-0.061177	-3.6267E-05	-3.1413	-0.0018622	-3.2025	-0.0018985	592.8118179399645	68.271	0.52256	68.041	67.835	68.357	-0.23048					18	12	3	0	0	0	0.024762	1	7898	7898		31.53	4.7337	1	99432			64355	3717	45323	45388	69595	69595					0.02871377751421278
QSVTRLAAHMA	11	Unmodified	_QSVTRLAAHMA_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.813864	1183.61318	-0.31738	-0.00018815	-3.1624	-0.0018747	-3.4798	-0.0020629	592.8118080928124	68.333	0.52062	68.099	67.918	68.439	-0.23376	0.026597	-3.8308E-05	NaN	31.53	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110200			64356	3717	45323	45388							0.02871377751421278
QSVTTFVHA	9	Unmodified	_QSVTTFVHA_					0	0	0			REV__nc|ENSG00000104812|P13807-2|GYS1	REV__nc|ENSG00000104812|P13807-2|GYS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.7768859863281	2	495.256174	988.497795	-0.54271	-0.00026878	0.19953	9.8819E-05	-0.34318	-0.00016996	495.2561310041208	27.383	0.80946	27.141	26.786	27.596	-0.24217					32	18	3	0	0	0	0.024263	1	1567	1567		34.173	0	1	340800	+		64357	21467	45324	45389	69596	69596					0.0030859689209137287
QSVVIWDD	8	Unmodified	_QSVVIWDD_					0	0	0			REV__ENSG00000167601|ENST00000301178|AXL	REV__ENSG00000167601|ENST00000301178|AXL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.25506591796875	2	481.234907	960.455261	-0.507	-0.00024399	-1.6867	-0.00081171	-2.1937	-0.0010557	481.2341583004522	89.788	0.38934	89.66	89.413	89.803	-0.12774					13	8	2	0	0	0	0.027866	1	10980	10980		15.642	0	1	59525	+		64358	26160	45325	45390	69597	69597					-0.02654798236142142
QSWILLII	8	Unmodified	_QSWILLII_					0	0	0		ENST00000380701.7_1_9:15571662-15571728:+|nuORF	ENST00000380701.7_1_9:15571662-15571728:+|nuORF	ENST00000380701.7_1_9:15571662-15571728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2618103027344	2	493.307678	984.600803	-0.13672	-6.7447E-05	-3.9585	-0.0019528	-4.0953	-0.0020202	493.30563065276954	70.481	0.85358	70.493	70.272	71.126	0.012421					47	20	3	0	0	0	0.027866	1	8508	8508		106.42	10.225	1	441250			64359	13317	45326	45391	69598	69598					0.10788709350720183
QSWLEVQLA	9	Unmodified	_QSWLEVQLA_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.278076171875	2	537.284931	1072.55531	-0.16342	-8.7803E-05	-2.8331	-0.0015222	-2.9966	-0.00161	537.784560903911	84.599	1.0498	84.461	84.02	85.07	-0.13789					32	24	2	0	0	0	0.024397	1	10202	10202		31.53	0	1	233400			64360	10947	45327	45392	69599	69599					0.021934390976639406
QSWPRPCW	8	Unmodified	_QSWPRPCW_					0	0	0			REV__ENST00000367204.5_1_1:204095788-204096322:+|nuORF	REV__ENST00000367204.5_1_1:204095788-204096322:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8130493164062	2	530.245086	1058.47562	-0.010785	-5.7184E-06	-0.5553	-0.00029444	-0.56608	-0.00030016	530.2443639959755	77.5	1.732	77.238	76.302	78.034	-0.26202					53	41	3	0	0	0	0.027866	1	9267	9267		31.53	8.4873	1	218260	+		64361	31008	45328	45393	69600	69600					-0.05127906057305154
QSWRAHRCGSH	11	Unmodified	_QSWRAHRCGSH_					0	0	0		ILDR1|p.R497C|1|0.27|ENSG00000145103|chr3:121993260-121993260|G/A|missense_variant	ILDR1|p.R497C|1|0.27|ENSG00000145103|chr3:121993260-121993260|G/A|missense_variant	ILDR1|p.R497C|1|0.27|ENSG00000145103|chr3:121993260-121993260|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.20745849609375	3	442.207383	1323.60032	0.27753	0.00012273	1.4956	0.00066138	1.7732	0.00078411	442.2079341527262	18.797	0.53958	18.666	18.45	18.99	-0.13148					21	10	3	0	0	0	1.0764	1	327	327		17.833	0	1	116660			64362	17766	45329	45394	69601	69601					-0.04853640588089547
QSWRKLSI	8	Unmodified	_QSWRKLSI_					0	0	0		ENST00000292535.11_1_7:101747723-101758522:+|nuORF	ENST00000292535.11_1_7:101747723-101758522:+|nuORF	ENST00000292535.11_1_7:101747723-101758522:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7835998535156	2	509.295633	1016.57671	-1.2445	-0.00063383	4.1589	0.0021181	2.9144	0.0014843	509.79824857033003	49.539	0.73981	49.613	49.242	49.982	0.074196					33	19	3	0	0	0	0.027866	1	5056	5056		20.947	0	1	257880			64363	11804	45330	45395	69602	69602					0.06908868917037125
QSYMSIPTNY	10	Unmodified	_QSYMSIPTNY_					0	0	0			REV__nc|ENSG00000122367|O75112-6|LDB3	REV__nc|ENSG00000122367|O75112-6|LDB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	601.273193359375	2	602.271164	1202.52777	-0.40591	-0.00024447	-3.9136	-0.002357	-4.3195	-0.0026015	602.7715198115008	69.346	0.29073	69.123	68.894	69.185	-0.22245					9	6	2	0	0	0	0.03519	1	8024	8024		41.427	4.9799	1	84157	+		64364	36620	45331	45396	69603	69603					-0.06538832224873659
QSYVLAAPR	9	Unmodified	_QSYVLAAPR_					0	0	0			REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7510681152344	2	502.779816	1003.54508	0.013009	6.5409E-06	2.5645	0.0012894	2.5775	0.0012959	502.7810481142687	34.214	0.18668	33.99	33.883	34.07	-0.22412					6	4	2	0	0	0	0.024495	1	2489	2489		19.997	3.5236	1	129980	+		64365	20437	45332	45397	69604	69604					0.043448761630770605
QTAEWHSLL	9	Unmodified	_QTAEWHSLL_					0	0	0		ENST00000218388.8_1_X:47445059-47446002:+|nuORF	ENST00000218388.8_1_X:47445059-47446002:+|nuORF	ENST00000218388.8_1_X:47445059-47446002:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.7615966796875	2	542.774731	1083.53491	-1.483	-0.00080493	3.7658	0.002044	2.2828	0.001239	543.2788326619531	84.186	0.60724	84.113	83.614	84.221	-0.072769					15	13	2	0	0	0	0.024319	1	10513	10513		39.253	7.6739	1	58235			64366	11167	45333	45398	69605	69605					-0.003517315621365924
QTAIQLWPVL	10	Unmodified	_QTAIQLWPVL_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.8377075195312	2	584.839874	1167.66519	-1.6075	-0.00094015	-2.4253	-0.0014184	-4.0328	-0.0023586	584.8384827619993	52.92	0.87505	52.92	52.634	53.509	0					75	23	5	0	0	0	0.80817	1	5689	5689		60.118	0.18749	1	7466100	+		64367	24671	45334	45399	69606	69606					0.08806864436837714
QTAIQLWPVL	10	Unmodified	_QTAIQLWPVL_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.8383178710938	2	584.839874	1167.66519	-1.3256	-0.00077527	-2.592	-0.0015159	-3.9176	-0.0022912	584.8383370442375	53.001	0.77698	52.853	52.569	53.346	-0.14723					67	20	5	0	0	0	0.80817	1	5669	5669		60.118	1.3363	1	6449700	+		64368	24671	45334	45399	69607	69607					0.08806864436837714
QTALELTRRCL	11	Unmodified	_QTALELTRRCL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7594299316406	3	435.243211	1302.7078	0.71056	0.00030927	3.3593	0.0014621	4.0698	0.0017714	435.245797099677	86.378	0.56601	86.236	86.103	86.669	-0.14217					18	12	2	0	0	0	0.024746	1	10549	10549		21.032	0	1	47615			64369	10421	45335	45400	69608	69608					0.0685589150280066
QTANKPSR	8	Unmodified	_QTANKPSR_					0	0	0		nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG	nc|ENSG00000227345|Q86W56-3|PARG	nc|ENSG00000227345|Q86W56-3|PARG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2475891113281	2	451.246141	900.477728	-0.18171	-8.1994E-05	2.6403	0.0011914	2.4586	0.0011094	451.2474871573439	23.894	0.68933	23.714	23.395	24.084	-0.17989					60	15	6	0	0	0	0.74904	1	1002	1002		63.306	0	1	1920000			64370	10671	45336	45401	69609	69609					0.023508459521394798
QTAPNCTLWS	10	Unmodified	_QTAPNCTLWS_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7916870117188	2	560.758223	1119.50189	-0.5153	-0.00028896	-1.862	-0.0010441	-2.3773	-0.0013331	560.757193721874	52.074	0.62793	51.955	51.575	52.203	-0.11875					30	16	3	0	0	0	0.03519	1	5364	5364		60.118	16.001	1	315600	+		64371	22676	45337	45402	69610	69610					-0.05307681676504217
QTAPNCTLWS	10	Unmodified	_QTAPNCTLWS_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.7926025390625	2	560.758223	1119.50189	-1.4716	-0.00082522	0.59693	0.00033474	-0.87468	-0.00049048	560.7579296676911	52.342	0.485	52.073	51.831	52.316	-0.26903					22	12	3	0	0	0	0.03519	1	5440	5440		51.193	20.875	1	205590	+		64372	22676	45337	45402	69611	69611					-0.05307681676504217
QTAQLIPFK	9	Unmodified	_QTAQLIPFK_					0	0	0		ENST00000375759.7_1_1:16257404-16257476:+|nuORF	ENST00000375759.7_1_1:16257404-16257476:+|nuORF	ENST00000375759.7_1_1:16257404-16257476:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.30322265625	2	523.305667	1044.59678	-0.64645	-0.00033829	-3.2058	-0.0016776	-3.8522	-0.0020159	523.3039264969486	30.072	0.63937	29.828	29.482	30.122	-0.24415					39	14	4	0	0	0	0.31037	1	1886	1886		74.255	12.148	1	775960			64373	13168	45338	45403	69612	69612					0.0762661985700106
QTARPVHTAS	10	Unmodified	_QTARPVHTAS_					0	0	0		nc|ENSG00000165646|Q05940-2|SLC18A2;ENSG00000165646|ENST00000644641|SLC18A2	nc|ENSG00000165646|Q05940-2|SLC18A2	nc|ENSG00000165646|Q05940-2|SLC18A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2838134765625	2	534.283254	1066.55196	0.071868	3.8398E-05	2.4426	0.0013051	2.5145	0.0013435	534.2847734562439	105.72	0.98301	105.72	105.41	106.39	0					83	35	3	0	0	0	1.0616	1	13587	13587		37.812	5.8567	1	282140			64374	7446	45339	45404	69613	69613					0.021341890436588073
QTARRYHI	8	Unmodified	_QTARRYHI_					0	0	0		ENST00000553025.5_1_12:110456183-110456240:+|nuORF	ENST00000553025.5_1_12:110456183-110456240:+|nuORF	ENST00000553025.5_1_12:110456183-110456240:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8001098632812	2	522.788507	1043.56246	-0.70525	-0.0003687	-1.593	-0.00083282	-2.2983	-0.0012015	522.7874254670147	48.54	0.27974	48.387	48.261	48.54	-0.15277					10	7	2	0	0	0	0.027866	1	4947	4947		23.042	3.939	1	175610			64375	16629	45340	45405	69614	69614					0.042422164887511826
QTAVFLYSL	9	Unmodified	_QTAVFLYSL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7378540039062	2	521.2844	1040.55425	-0.60852	-0.00031721	-1.875	-0.00097739	-2.4835	-0.0012946	521.2839073829731	62.204	0.50796	61.977	61.611	62.119	-0.22663					21	13	2	0	0	0	0.023842	1	7196	7196		41.427	0	1	411030			64376	3129	45341	45406	69615	69615					0.035592247287468126
QTCNEMQSLR	10	Oxidation (M)	_QTCNEM(Oxidation (M))QSLR_		QTCNEM(1)QSLR		QTCNEM(93)QSLR	0	0	1			REV__ENST00000492812.5_1_2:241656783-241664929:-|nuORF	REV__ENST00000492812.5_1_2:241656783-241664929:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.270751953125	2	613.268629	1224.52271	-1.6522	-0.0010133	4.3282	0.0026544	2.676	0.0016411	613.2716235554299	25.164	0.85566	24.937	24.538	25.394	-0.22683					70	19	6	0	0	0	0.45418	1	1162	1162		93.143	15.826	1	1793900	+		64377	33748	45342	45407	69616	69616		923			-0.0805745935917912
QTDAVAKFGV	10	Unmodified	_QTDAVAKFGV_					0	0	0		ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	MSMS	OPSCC_40_ClassI_Rep-3	6	518.277099609375	2	518.277106	1034.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.317	1	51.136	50.636	51.636	-0.18071								0	0	0	0.33958	1	5260	5260		74.165	2.8693	1				64378	10907	45343	45408	69617	69617					0.023771525806068894
QTDEKGKDL	9	Unmodified	_QTDEKGKDL_					0	0	0			REV__ENSG00000154240|ENST00000535342|CEP112	REV__ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2813720703125	2	517.261653	1032.50875	0.61086	0.00031597	0.21926	0.00011342	0.83012	0.00042939	517.2639504991687	74.389	0.72031	74.206	73.961	74.682	-0.18279					22	16	2	0	0	0	0.024447	1	8819	8819		25.574	0	1	123410	+		64379	24949	45344	45409	69618	69618					-0.00620045524260604
QTDFKVLV	8	Unmodified	_QTDFKVLV_					0	0	0			REV__ENSG00000089248|ENST00000261735|ERP29	REV__ENSG00000089248|ENST00000261735|ERP29	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2710266113281	2	475.271293	948.528032	-0.20005	-9.5077E-05	0.37499	0.00017822	0.17494	8.3144E-05	475.2712855888282	79.94	1.0511	79.961	79.561	80.612	0.021439					64	24	4	0	0	0	0.59392	1	9838	9838		76.847	2.5916	1	3567700	+		64380	20850	45345	45410	69619	69619					0.05170955557287016
QTDIDRLS	8	Unmodified	_QTDIDRLS_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-2|MYSM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.26922607421875	2	474.243264	946.471974	0.6665	0.00031608	-1.0243	-0.00048577	-0.35781	-0.00016969	474.24268786535566	26.67	0.54551	26.67	26.447	26.993	0					28	12	3	0	0	0	0.027866	1	1394	1394		30.504	0	1	207130	+		64381	25460	45346	45411	69620	69620					-0.0034029735018066276
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.7880249023438	2	583.788035	1165.56152	-0.38211	-0.00022307	0.01824	1.0648E-05	-0.36387	-0.00021242	583.7879916020677	65.887	1.1216	65.645	65.289	66.41	-0.24145					72	27	5	0	0	0	0.0004693	4	7531	7520;7531;7543;7555		154.01	71.771	1	8001900			64382	10182	45347	45412	69621;69622;69623;69624	69622					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.7880859375	2	583.788035	1165.56152	-1.6456	-0.00096066	1.2006	0.00070087	-0.44501	-0.00025979	583.7887089055777	65.862	1.1176	65.649	65.296	66.414	-0.21327					77	27	5	0	0	0	0.012363	5	7540	7517;7528;7540;7554;7568		136.99	62.734	1	7517000			64383	10182	45347	45412	69625;69626;69627;69628;69629	69627					-0.014640874614769928
QTDIQGALSAY	11	Unmodified	_QTDIQGALSAY_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.7879638671875	2	583.788035	1165.56152	-0.98263	-0.00057365	0.67156	0.00039205	-0.31107	-0.0001816	583.7883971603766	65.881	1.1045	65.63	65.312	66.416	-0.25112					71	27	5	0	0	0	0.0081089	4	7533	7513;7521;7533;7546		142.36	59.611	1	8035700			64384	10182	45347	45412	69630;69631;69632;69633	69632					-0.014640874614769928
QTDKLKELY	9	Unmodified	_QTDKLKELY_					0	0	0		ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72	ENSG00000174780|ENST00000642900|SRP72	ENSG00000174780|ENST00000642900|SRP72	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.3109741210938	2	569.311146	1136.60774	-1.0374	-0.00059058	-0.63044	-0.00035892	-1.6678	-0.0009495	569.3107065020649	38.943	1.2159	38.778	38.476	39.692	-0.16458					88	32	4	0	0	0	0.28753	1	3281	3281		77.318	7.69	1	9764300			64385	8496	45348	45413	69634	69634					0.04489977440630355
QTDKYCPWQ	9	Carbamidomethyl (C)	_QTDKYC(Carbamidomethyl (C))PWQ_	QTDKYC(1)PWQ		QTDKYC(120)PWQ		0	1	0			REV__ENST00000415330.2_1_1:9741129-9747481:-|nuORF	REV__ENST00000415330.2_1_1:9741129-9747481:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.27099609375	2	613.268955	1224.52336	-0.52037	-0.00031913	3.5078	0.0021512	2.9875	0.0018321	613.270916800364	24.972	1.1126	24.797	24.34	25.453	-0.17484					66	25	4	0	0	0	0.086035	2	1125	1116;1125		115.49	30.333	1	1664500	+		64386	32051	45349	45414	69635;69636	69636	422				-0.07992296647785224
QTDKYCPWQ	9	Carbamidomethyl (C)	_QTDKYC(Carbamidomethyl (C))PWQ_	QTDKYC(1)PWQ		QTDKYC(150)PWQ		0	1	0			REV__ENST00000415330.2_1_1:9741129-9747481:-|nuORF	REV__ENST00000415330.2_1_1:9741129-9747481:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2705688476562	2	613.268955	1224.52336	1.0482	0.00064282	1.6668	0.0010222	2.715	0.001665	613.2698976121554	25.014	1.0217	24.842	24.471	25.492	-0.17151					58	23	4	0	0	0	0.021872	2	1115	1115;1129		148.04	29.3	1	1897100	+		64387	32051	45349	45414	69637;69638	69637	422				-0.07992296647785224
QTDKYCPWQ	9	Carbamidomethyl (C)	_QTDKYC(Carbamidomethyl (C))PWQ_					0	1	0			REV__ENST00000415330.2_1_1:9741129-9747481:-|nuORF	REV__ENST00000415330.2_1_1:9741129-9747481:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	613.268955	1224.52336	-0.52037	-0.00031913	3.5078	0.0021512	2.9875	0.0018321	613.270916800364	24.972	1.1126	24.797	24.34	25.453	-0.17484	-0.06159	0.00077559	NaN	148.04	66	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1664500	+		64388	32051	45349	45414			422				-0.07992296647785224
QTDQTLTW	8	Unmodified	_QTDQTLTW_					0	0	0		ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.70855712890625	2	496.737814	991.461075	-0.21745	-0.00010802	-2.365	-0.0011748	-2.5824	-0.0012828	496.7365632308002	34.176	0.53707	33.952	33.721	34.258	-0.22412					37	13	4	0	0	0	0.027866	1	2528	2528		40.573	0	1	1055100			64389	13494	45350	45415	69639	69639					-0.03499699724477523
QTDQTLTW	8	Unmodified	_QTDQTLTW_					0	0	0		ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.737814	991.461075	-0.21803	-0.0001083	-2.1996	-0.0010926	-2.4176	-0.0012009	496.73671297075083	34.159	0.57462	33.952	33.668	34.242	-0.20696	-0.0038635	-2.4434E-05	NaN	47.916	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044800			64390	13494	45350	45415							-0.03499699724477523
QTDQTLTW	8	Unmodified	_QTDQTLTW_					0	0	0		ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.737814	991.461075	-1.1605	-0.00057644	-1.8214	-0.00090476	-2.9819	-0.0014812	496.73670905613415	34.14	0.50842	33.964	33.701	34.21	-0.17557	0.0080797	0.00035128	NaN	47.916	34	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989540			64391	13494	45350	45415							-0.03499699724477523
QTDTLQNDY	9	Unmodified	_QTDTLQNDY_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.240234375	2	549.240918	1096.46728	-1.033	-0.00056739	0.63664	0.00034967	-0.39641	-0.00021772	549.241184792205	44.71	0.58913	44.611	44.317	44.906	-0.099449					44	14	4	0	0	0	0.26413	1	4190	4190		80.455	16.921	1	1747900			64392	4845	45351	45416	69640	69640					-0.07709226283623138
QTDTLQNDY	9	Unmodified	_QTDTLQNDY_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.2394409179688	2	549.240918	1096.46728	-0.67904	-0.00037296	0.11745	6.4507E-05	-0.5616	-0.00030845	549.2408815030728	44.901	0.62733	44.648	44.354	44.981	-0.25252					47	15	4	0	0	0	0.14181	1	4212	4212		101.25	8.1094	1	1702600			64393	4845	45351	45416	69641	69641					-0.07709226283623138
QTDTLQNDY	9	Unmodified	_QTDTLQNDY_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.240918	1096.46728	-0.89453	-0.00049131	0.35689	0.00019602	-0.53763	-0.00029529	549.2410429757509	44.856	0.66033	44.645	44.327	44.988	-0.21109	0.010238	-7.4119E-05	NaN	101.25	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1663700			64394	4845	45351	45416							-0.07709226283623138
QTEATQEKY	9	Unmodified	_QTEATQEKY_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.2591552734375	2	549.259111	1096.50367	-0.52567	-0.00028873	0.17279	9.4908E-05	-0.35288	-0.00019382	549.2591413805654	24.957	0.61125	24.73	24.407	25.018	-0.22683					23	13	2	0	0	0	0.048057	2	1141	1141;1151		129.42	35.415	1	733000			64395	1949	45352	45417	69642;69643	69642					-0.04072349386888163
QTEATQEKY	9	Unmodified	_QTEATQEKY_					0	0	0		nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.259111	1096.50367	-0.2359	-0.00012957	-0.35136	-0.00019299	-0.58726	-0.00032256	549.258709662112	24.715	0.56643	24.54	24.21	24.777	-0.17484	-0.094961	-0.00052492	NaN	129.42	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49247			64396	1949	45352	45417							-0.04072349386888163
QTEDNMLFY	9	Unmodified	_QTEDNMLFY_					0	0	0		ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENSG00000141452|ENST00000269221|RMC1	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.7503662109375	2	580.750064	1159.48558	-0.16858	-9.7904E-05	0.7291	0.00042343	0.56052	0.00032552	580.7505417106084	73.886	0.52723	73.609	73.288	73.816	-0.2769					30	14	3	0	0	0	0.29158	1	8682	8682		76.774	2.7994	1	1635900			64397	5493	45353	45418	69644	69644					-0.08778807633257202
QTEDSISTVYT	11	Unmodified	_QTEDSISTVYT_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2123718261719	3	415.194469	1242.56158	-0.014907	-6.1894E-06	0.56367	0.00023403	0.54876	0.00022784	415.1945628116178	28.057	0.54819	28.057	27.726	28.274	0					19	13	2	0	0	0	0.024735	1	1620	1620		27.644	18.95	1	147910	+		64398	19655	45354	45419	69645	69645					-0.05000132252143885
QTEDSISTVYT	11	Unmodified	_QTEDSISTVYT_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	415.194469	1242.56158	-0.035176	-1.4605E-05	3.1585	0.0013114	3.1234	0.0012968	415.194966455713	27.864	0.23952	27.712	27.569	27.808	-0.15195	-0.18715	-8.8894E-05	NaN	15.337	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31125	+		64399	19655	45354	45419							-0.05000132252143885
QTEEDLQLN	9	Unmodified	_QTEEDLQLN_					0	0	0			REV__nc|ENSG00000134758|Q8WVD3-2|RNF138	REV__nc|ENSG00000134758|Q8WVD3-2|RNF138	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.7918701171875	2	545.256568	1088.49858	-0.27414	-0.00014947	-0.17335	-9.4521E-05	-0.44749	-0.000244	545.2563682327958	47.276	0.82031	47.123	46.586	47.406	-0.15301					25	21	2	0	0	0	0.024409	1	4739	4739		33.922	0	1	140180	+		64400	23477	45355	45420	69646	69646					-0.0421265324948763
QTEEDLQLN	9	Unmodified	_QTEEDLQLN_					0	0	0			REV__nc|ENSG00000134758|Q8WVD3-2|RNF138	REV__nc|ENSG00000134758|Q8WVD3-2|RNF138	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.256568	1088.49858	-0.44653	-0.00024347	-3.4451	-0.0018785	-3.8917	-0.002122	545.2547515261449	47.559	0.88358	47.462	46.86	47.743	-0.096653	0.16953	-0.0026473	NaN	31.634	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247530	+		64401	23477	45355	45420							-0.0421265324948763
QTEGIFRVP	9	Unmodified	_QTEGIFRVP_					0	0	0		ENSG00000147799|ENST00000377307|ARHGAP39;nc|ENSG00000147799|Q9C0H5|ARHGAP39	ENSG00000147799|ENST00000377307|ARHGAP39	ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2999877929688	2	523.785099	1045.55564	0.59797	0.00031321	3.2116	0.0016822	3.8096	0.0019954	523.7874743809259	18.294	0.59193	18.138	18.002	18.594	-0.15637					20	11	3	0	0	0	0.023837	1	292	292		54.776	3.5836	1	17928			64402	5993	45356	45421	69647	69647					0.03468858817518594
QTEGIFRVP	9	Unmodified	_QTEGIFRVP_					0	0	0		ENSG00000147799|ENST00000377307|ARHGAP39;nc|ENSG00000147799|Q9C0H5|ARHGAP39	ENSG00000147799|ENST00000377307|ARHGAP39	ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.785099	1045.55564	0.025283	1.3243E-05	5.4367	0.0028477	5.462	0.0028609	524.2906168061463	18.045	0.14821	17.838	17.764	17.912	-0.20669	-0.14979	0.00094774	NaN	54.776	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9457.1			64403	5993	45356	45421							0.03468858817518594
QTEKQKKLT	9	Unmodified	_QTEKQKKLT_					0	0	0		ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1	ENSG00000172352|ENST00000382407|CDY1B	ENSG00000172352|ENST00000382407|CDY1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.32470703125	2	552.324588	1102.63462	1.0613	0.0005862	-1.325	-0.00073183	-0.26366	-0.00014563	552.323826079248	20.1	0.6789	19.9	19.653	20.331	-0.2001					40	13	5	0	0	0	0.1158	2	502	490;502		107.01	5.4575	1	1274000			64404	4369	45357	45422	69648;69649	69649					0.08741086051782077
QTEKQKKLT	9	Unmodified	_QTEKQKKLT_					0	0	0		ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1	ENSG00000172352|ENST00000382407|CDY1B	ENSG00000172352|ENST00000382407|CDY1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.3246459960938	2	552.324588	1102.63462	0.33559	0.00018536	-0.65591	-0.00036228	-0.32032	-0.00017692	552.3241848391576	20.126	0.73473	19.903	19.68	20.415	-0.22344					42	14	4	0	0	0	0.14024	1	491	491		101.6	0	1	1181800			64405	4369	45357	45422	69650	69650					0.08741086051782077
QTEKQKKLT	9	Unmodified	_QTEKQKKLT_					0	0	0		ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1	ENSG00000172352|ENST00000382407|CDY1B	ENSG00000172352|ENST00000382407|CDY1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.324588	1102.63462	0.15933	8.7999E-05	-0.57708	-0.00031874	-0.41776	-0.00023074	552.3241457010452	19.667	0.5163	19.667	19.463	19.979	0	-0.1649	0.00015171	NaN	107.01	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367140			64406	4369	45357	45422							0.08741086051782077
QTEKQSTGVY	10	Unmodified	_QTEKQSTGVY_					0	0	0		nc|ENSG00000163431|P29536-2|LMOD1;ENSG00000163431|ENST00000367288|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.7803344726562	2	570.78021	1139.54587	-0.54428	-0.00031067	0.38592	0.00022028	-0.15836	-9.0391E-05	570.7804121082415	25.916	0.58142	25.68	25.425	26.007	-0.23603					40	14	4	0	0	0	0.11225	2	1267	1267;1290		132.76	54.494	1	2876700			64407	7077	45358	45423	69651;69652	69651					-0.0183237397850462
QTEKQSTGVY	10	Unmodified	_QTEKQSTGVY_					0	0	0		nc|ENSG00000163431|P29536-2|LMOD1;ENSG00000163431|ENST00000367288|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.7802734375	2	570.78021	1139.54587	-0.083025	-4.7389E-05	-0.023057	-1.316E-05	-0.10608	-6.055E-05	570.780133914128	25.661	0.89886	25.491	24.997	25.896	-0.17078					48	22	4	0	0	0	0.10407	2	1233	1225;1233		134.77	41.168	1	2907100			64408	7077	45358	45423	69653;69654	69654					-0.0183237397850462
QTELLLDLVA	10	Unmodified	_QTELLLDLVA_					0	0	0		ENSG00000213654|ENST00000375040|GPSM3	ENSG00000213654|ENST00000375040|GPSM3	ENSG00000213654|ENST00000375040|GPSM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2633666992188	2	557.821347	1113.62814	-0.94537	-0.00052735	0.29763	0.00016603	-0.64774	-0.00036132	557.8211148373598	44.384	0.64675	44.279	43.78	44.426	-0.10468					23	17	2	0	0	0	0.03519	1	4164	4164		64.207	25.401	1	195150			64409	10515	45359	45424	69655	69655					0.07587148100446939
QTENLLGSY	9	Unmodified	_QTENLLGSY_					0	0	0		ENST00000561059.5_1_14:24606216-24606483:+|nuORF	ENST00000561059.5_1_14:24606216-24606483:+|nuORF	ENST00000561059.5_1_14:24606216-24606483:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3021850585938	2	512.750921	1023.48729	0.88108	0.00045178	-0.90114	-0.00046206	-0.020055	-1.0283E-05	512.7503090361499	51.325	0.75299	51.213	50.973	51.726	-0.11163					48	19	4	0	0	0	0.024209	1	5281	5281		47.657	19.576	1	1555200			64410	16812	45360	45425	69656	69656					-0.023514305530056845
QTENLPSEP	9	Unmodified	_QTENLPSEP_					0	0	0			REV__ENST00000558165.3_1_15:76551329-76551434:-|nuORF	REV__ENST00000558165.3_1_15:76551329-76551434:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.830810546875	2	507.740554	1013.46655	-0.72798	-0.00036962	1.509	0.00076619	0.78103	0.00039656	507.74109854085015	48.657	2.345	48.556	46.535	48.88	-0.1008					107	63	3	0	0	0	0.024261	1	4524	4524		64.207	5.4253	1	1194900	+		64411	20934	45361	45426	69657	69657					-0.0396402093266488
QTEPPTTTP	9	Unmodified	_QTEPPTTTP_					0	0	0			REV__ENSG00000129810|ENST00000412997|SGO1	REV__ENSG00000129810|ENST00000412997|SGO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.76947021484375	2	486.237647	970.460741	-0.84705	-0.00041187	-3.6832	-0.0017909	-4.5303	-0.0022028	486.2378744038704	35.256	0.11449	35.3	35.229	35.343	0.04406					4	2	2	0	0	0	0.024466	1	2642	2642		31.53	9.8275	1	41694	+		64412	23064	45362	45427	69658	69658					-0.02567119444358923
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.7849731445312	2	576.785827	1151.5571	-0.034249	-1.9754E-05	-0.24238	-0.0001398	-0.27663	-0.00015955	576.7857116588143	34.702	0.94677	34.478	34.106	35.053	-0.22412					68	23	5	0	0	0	0.021872	4	2585	2563;2573;2585;2599		148.04	38.37	1	6321500			64413	4722	45363	45428	69659;69660;69661;69662	69661					-0.012615518843858808
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7854614257812	2	576.785827	1151.5571	-0.63923	-0.0003687	0.13999	8.0742E-05	-0.49925	-0.00028796	576.7859613485047	34.592	0.92376	34.385	34.082	35.005	-0.20696					72	22	5	0	0	0	0.021872	3	2554	2545;2554;2567		148.04	39.955	1	6541900			64414	4722	45363	45428	69663;69664;69665	69664					-0.012615518843858808
QTESQQIRY	9	Unmodified	_QTESQQIRY_					0	0	0		nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.L1114Yfs*22|1|0.33|ENSG00000133657|chr3:194419940-194419940|A/-|frameshift_variant;ATP13A3|p.I1118Kfs*22|1|0.05|ENSG00000133657|chr3:194419928-194419929|-/GCAGCTTTTCT|frameshift_variant	nc|ENSG00000133657|Q9H7F0|ATP13A3	nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7855834960938	2	576.785827	1151.5571	-0.82702	-0.00047702	0.45465	0.00026224	-0.37237	-0.00021478	576.7860787221844	34.57	1.1414	34.394	34.05	35.191	-0.17557					73	28	5	0	0	0	0.014988	4	2547	2526;2535;2547;2560		161.9	66.024	1	7116200			64415	4722	45363	45428	69666;69667;69668;69669	69668					-0.012615518843858808
QTETHNVFY	9	Unmodified	_QTETHNVFY_					0	0	0		ENSG00000131724|ENST00000371666|IL13RA1;nc|ENSG00000131724|P78552-2|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7625122070312	2	569.76182	1137.50909	-0.036868	-2.1006E-05	0.090624	5.1634E-05	0.053756	3.0628E-05	569.7619315710991	43.168	0.72823	43.056	42.735	43.463	-0.11253					59	19	4	0	0	0	0.48817	1	3944	3944		60.118	7.1816	1	2494500			64416	4543	45364	45429	69670	69670					-0.05416625804423347
QTETHNVFY	9	Unmodified	_QTETHNVFY_					0	0	0		ENSG00000131724|ENST00000371666|IL13RA1;nc|ENSG00000131724|P78552-2|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7623291015625	2	569.76182	1137.50909	-0.32471	-0.00018501	0.22477	0.00012806	-0.099939	-5.6942E-05	569.7619374778511	43.316	0.84417	43.079	42.719	43.563	-0.23736					55	22	4	0	0	0	0.1158	1	3960	3960		107.01	30.233	1	2259400			64417	4543	45364	45429	69671	69671					-0.05416625804423347
QTETHNVFY	9	Unmodified	_QTETHNVFY_					0	0	0		ENSG00000131724|ENST00000371666|IL13RA1;nc|ENSG00000131724|P78552-2|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7618408203125	2	569.76182	1137.50909	-0.74449	-0.00042418	0.44522	0.00025367	-0.29927	-0.00017051	569.7621080796941	43.364	0.68508	43.138	42.833	43.518	-0.22597					56	18	4	0	0	0	0.37611	1	3954	3954		67.494	3.9598	1	2419400			64418	4543	45364	45429	69672	69672					-0.05416625804423347
QTETKTITY	9	Unmodified	_QTETKTITY_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.779296875	2	542.779679	1083.5448	-0.44334	-0.00024064	-0.19248	-0.00010447	-0.63583	-0.00034511	542.7795503000049	35.185	1.2337	34.969	34.508	35.741	-0.21555					85	31	4	0	0	0	0.043667	5	2646	2634;2646;2657;2669;2681		131.03	64.602	1	11496000			64419	1676	45365	45430	69673;69674;69675;69676;69677	69674					0.0063741165256487875
QTETKTITY	9	Unmodified	_QTETKTITY_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.779541015625	2	542.779679	1083.5448	-0.67357	-0.0003656	0.11335	6.1522E-05	-0.56022	-0.00030408	542.7796863596351	35.189	1.2283	34.976	34.32	35.548	-0.21246					87	30	4	0	0	0	0.1158	5	2627	2627;2638;2650;2663;2675		107.01	44.9	1	10553000			64420	1676	45365	45430	69678;69679;69680;69681;69682	69678					0.0063741165256487875
QTETKTITY	9	Unmodified	_QTETKTITY_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000452150.6_1_6:131179278-131188835:-|nuORF	nc|ENSG00000079819|O43491-3|EPB41L2	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.7799072265625	2	542.779679	1083.5448	-1.1872	-0.00064441	0.4847	0.00026309	-0.70254	-0.00038132	542.7798988672432	35.105	1.1248	34.918	34.363	35.488	-0.18675					93	28	5	0	0	0	0.086035	5	2603	2603;2614;2626;2639;2653		115.49	53.387	1	11713000			64421	1676	45365	45430	69683;69684;69685;69686;69687	69683					0.0063741165256487875
QTEYEEEL	8	Unmodified	_QTEYEEEL_					0	0	0		nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7;ENST00000492278.5_1_9:140354847-140355256:-|nuORF	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2407836914062	2	520.724569	1039.43459	-0.70341	-0.00036628	1.8309	0.0009534	1.1275	0.00058711	520.7256689438877	76.339	0.36301	76.339	76.11	76.473	0					11	8	2	0	0	0	0.027866	1	9380	9380		15.642	0	1	52968			64422	4436	45366	45431	69688	69688					-0.08355433406472912
QTFALIPI	8	Unmodified	_QTFALIPI_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.7699279785156	2	451.770929	901.527304	-0.75121	-0.00033938	-3.4754	-0.0015701	-4.2266	-0.0019095	451.76929136593265	21.792	0.82003	21.579	21.315	22.135	-0.2128					28	16	2	0	0	0	0.96719	1	691	691		42.474	5.446	1	247180	+		64423	25264	45367	45432	69689	69689					0.07260160908231228
QTFALIPI	8	Unmodified	_QTFALIPI_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.770929	901.527304	0.63926	0.0002888	-4.7866	-0.0021625	-4.1474	-0.0018737	451.7686239240713	21.732	0.57264	21.555	21.35	21.923	-0.17721	-0.052758	-0.00083038	NaN	42.474	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158640	+		64424	25264	45367	45432							0.07260160908231228
QTFALIPI	8	Unmodified	_QTFALIPI_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.770929	901.527304	-0.25028	-0.00011307	-3.4962	-0.0015795	-3.7465	-0.0016925	451.7691255582978	21.88	0.52667	21.689	21.468	21.994	-0.19072	0.081385	0.00033559	NaN	42.474	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199860	+		64425	25264	45367	45432							0.07260160908231228
QTFALIPI	8	Unmodified	_QTFALIPI_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	451.770929	901.527304	-0.75121	-0.00033938	-3.4754	-0.0015701	-4.2266	-0.0019095	451.76929136593265	21.792	0.82003	21.579	21.315	22.135	-0.2128	-0.028627	0.0003544	NaN	42.474	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247180	+		64426	25264	45367	45432							0.07260160908231228
QTFFDLDV	8	Unmodified	_QTFFDLDV_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-4|HPSE	REV__nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3059997558594	2	492.737283	983.460012	-0.083044	-4.0919E-05	2.2428	0.0011051	2.1598	0.0010642	492.7382095027333	68.829	0.76202	68.829	68.332	69.094	0					23	19	2	0	0	0	0.027866	1	8292	8292		23.042	6.5693	1	114410	+		64427	26736	45368	45433	69690	69690					-0.032379140933926465
QTFLAGLH	8	Unmodified	_QTFLAGLH_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.26336669921875	2	443.742702	885.470852	-0.678	-0.00030086	-3.1863	-0.0014139	-3.8643	-0.0017148	443.74073041012554	29.492	0.67954	29.32	28.981	29.66	-0.17258					19	15	2	0	0	0	0.027866	1	1795	1795		28.254	0	1	100420	+		64428	23577	45369	45434	69691	69691					0.023535330715731106
QTFLKRLY	8	Unmodified	_QTFLKRLY_					0	0	0		ENST00000555392.1_1_14:74423051-74423234:+|nuORF	ENST00000555392.1_1_14:74423051-74423234:+|nuORF	ENST00000555392.1_1_14:74423051-74423234:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.75244140625	2	534.813659	1067.61277	-0.55103	-0.0002947	-0.80744	-0.00043183	-1.3585	-0.00072653	534.8136633850623	40.268	0.37021	40.043	39.852	40.222	-0.225					16	9	2	0	0	0	0.027866	1	3457	3457		35.618	0	1	291490			64429	16682	45370	45435	69692	69692					0.08166326093896714
QTFLMEVIDK	10	Oxidation (M)	_QTFLM(Oxidation (M))EVIDK_		QTFLM(1)EVIDK		QTFLM(88)EVIDK	0	0	1			REV__ENSG00000134996|ENST00000346234|OSTF1	REV__ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.8816833496094	3	413.881168	1238.62167	-1.1197	-0.00046344	-0.22583	-9.3465E-05	-1.3456	-0.0005569	413.88102645891894	29.233	1.2019	28.987	28.534	29.736	-0.24524					72	27	4	0	0	0	0.5013	1	1768	1768		88.134	15.89	1	2871300	+		64430	23501	45371	45436	69693	69693		699			0.011908868773844006
QTFLMEVIDK	10	Oxidation (M)	_QTFLM(Oxidation (M))EVIDK_		QTFLM(1)EVIDK		QTFLM(85)EVIDK	0	0	1			REV__ENSG00000134996|ENST00000346234|OSTF1	REV__ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.8817443847656	3	413.881168	1238.62167	-0.52799	-0.00021852	-0.75952	-0.00031435	-1.2875	-0.00053287	413.8807930443195	29.116	1.2394	28.944	28.463	29.703	-0.17258					71	28	5	0	0	0	0.53069	1	1749	1749		84.817	14.001	1	2823200	+		64431	23501	45371	45436	69694	69694		699			0.011908868773844006
QTFLMEVIDK	10	Oxidation (M)	_QTFLM(Oxidation (M))EVIDK_		QTFLM(1)EVIDK		QTFLM(120)EVIDK	0	0	1			REV__ENSG00000134996|ENST00000346234|OSTF1	REV__ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.8817443847656	3	413.881168	1238.62167	-0.14975	-6.198E-05	-1.2874	-0.00053284	-1.4372	-0.00059482	413.88059887469956	28.974	1.4385	28.825	28.529	29.967	-0.14952					77	33	4	0	0	0	0.22694	1	1714	1714		117.71	19.124	1	2681700	+		64432	23501	45371	45436	69695	69695		699			0.011908868773844006
QTFLSEIRW	9	Unmodified	_QTFLSEIRW_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF;ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000130511|Q9BWG4-2|SSBP4;ENSG00000130511|ENST00000270061|SSBP4	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.3110961914062	2	590.31148	1178.60841	-0.058927	-3.4785E-05	0.21411	0.00012639	0.15518	9.1605E-05	590.3114654185141	77.106	0.88363	76.838	76.552	77.436	-0.26807					50	21	4	0	0	0	0.071379	3	9146	9146;9158;9170		120.87	42.605	1	2441200			64433	5825	45372	45437	69696;69697;69698	69696					0.026248168803022054
QTFLSEIRW	9	Unmodified	_QTFLSEIRW_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF;ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000130511|Q9BWG4-2|SSBP4;ENSG00000130511|ENST00000270061|SSBP4	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.3110961914062	2	590.31148	1178.60841	-0.21429	-0.00012649	0.39041	0.00023046	0.17613	0.00010397	590.3115207638466	77.08	0.91031	76.828	76.528	77.438	-0.25162					50	22	4	0	0	0	0.016249	3	9162	9153;9162;9175		155.58	51.528	1	2456900			64434	5825	45372	45437	69699;69700;69701	69700					0.026248168803022054
QTFLSEIRW	9	Unmodified	_QTFLSEIRW_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3;ENST00000508912.1_1_5:80932374-80946133:-|nuORF;ENST00000506960.5_1_5:80911285-80946133:-|nuORF;ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000130511|Q9BWG4-2|SSBP4;ENSG00000130511|ENST00000270061|SSBP4	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.3115844726562	2	590.31148	1178.60841	-0.91602	-0.00054074	0.48948	0.00028894	-0.42654	-0.00025179	590.3116783785649	76.8	0.99591	76.632	76.352	77.348	-0.16854					58	23	5	0	0	0	0.053401	4	9117	9105;9117;9129;9143		127.46	43.551	1	2551600			64435	5825	45372	45437	69702;69703;69704;69705	69703					0.026248168803022054
QTFLSFWSLN	10	Unmodified	_QTFLSFWSLN_					0	0	0		ENST00000349703.6_1_4:39289509-39289731:-|nuORF	ENST00000349703.6_1_4:39289509-39289731:-|nuORF	ENST00000349703.6_1_4:39289509-39289731:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.240234375	3	414.876634	1241.60807	-0.18905	-7.8432E-05	3.795	0.0015745	3.606	0.001496	414.87859472321287	33.885	0.31832	33.661	33.485	33.803	-0.22412					11	7	2	0	0	0	0.03519	1	2468	2468		5.6988	0	1	81814			64436	12590	45373	45438	69706	69706					-0.0030660283950965095
QTFPEWGF	8	Unmodified	_QTFPEWGF_					0	0	0			REV__ENSG00000283528|ENST00000636941|TCAF2C	REV__ENSG00000283528|ENST00000636941|TCAF2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7138671875	2	506.232168	1010.44978	-0.6284	-0.00031812	-0.30032	-0.00015203	-0.92872	-0.00047015	506.23181381216676	28.826	0.76653	28.676	28.363	29.129	-0.14952					32	17	3	0	0	0	0.027866	1	1720	1720		21.96	9.0007	1	447690	+		64437	26462	45374	45439	69707	69707					-0.05502477027948771
QTFPSQHR	8	Unmodified	_QTFPSQHR_					0	0	0		ENST00000355773.5_1_6:74304015-74304120:-|nuORF	ENST00000355773.5_1_6:74304015-74304120:-|nuORF	ENST00000355773.5_1_6:74304015-74304120:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2950439453125	2	500.75159	999.488627	0.28552	0.00014297	-0.33386	-0.00016718	-0.048345	-2.4209E-05	500.7512006159509	25.48	0.87305	25.56	25.336	26.209	0.08009					38	20	2	0	0	0	0.027866	1	1232	1232		20.947	10.081	1	480250			64438	12654	45375	45440	69708	69708					-0.011137516735743702
QTFQLIFNI	9	Unmodified	_QTFQLIFNI_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3108520507812	2	562.310949	1122.60735	0.044339	2.4932E-05	-0.057416	-3.2286E-05	-0.013077	-7.3534E-06	562.3107990391446	87.524	1.615	87.524	87.152	88.767	0					122	38	4	0	0	0	0.14024	2	11009	11009;11080		101.6	2.2258	1	2858300			64439	7090	45376	45441	69709;69710	69709					0.05094602511439916
QTFQLIFNI	9	Unmodified	_QTFQLIFNI_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3108520507812	2	562.310949	1122.60735	0.14969	8.4173E-05	-0.21723	-0.00012215	-0.067535	-3.7976E-05	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.12602	1	10972	10972		104.75	0.68976	1	3232300			64440	7090	45376	45441	69711	69711					0.05094602511439916
QTFQLIFNI	9	Unmodified	_QTFQLIFNI_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.310546875	2	562.310949	1122.60735	0.47833	0.00026897	-0.52432	-0.00029483	-0.045989	-2.586E-05	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.19099	1	11027	11027		90.37	0	1	3090500			64441	7090	45376	45441	69712	69712					0.05094602511439916
QTFSKVEKV	9	Unmodified	_QTFSKVEKV_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8125	2	533.300581	1064.58661	-1.0724	-0.00057191	0.15458	8.2435E-05	-0.91782	-0.00048947	533.8003822210713	54.445	0.17097	54.445	54.321	54.492	0					6	4	2	0	0	0	0.024456	1	5957	5957		28.081	0	1	68339	+		64442	20141	45377	45442	69713	69713					0.05690012131753974
QTFSKVEKV	9	Unmodified	_QTFSKVEKV_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.300581	1064.58661	0.27128	0.00014468	-0.95443	-0.000509	-0.68314	-0.00036432	533.2998941535511	54.488	0.34417	54.282	54.087	54.431	-0.20613	-0.0011427	-0.00081978	NaN	28.081	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222330	+		64443	20141	45377	45442							0.05690012131753974
QTFSSKTEW	9	Unmodified	_QTFSSKTEW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF;ENST00000575116.1_1_17:1555319-1557183:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.2645874023438	2	557.264196	1112.51384	-0.96501	-0.00053776	0.38469	0.00021437	-0.58032	-0.00032339	557.2642572672568	44.498	0.94184	44.393	44.03	44.972	-0.10468					61	24	4	0	0	0	0.30449	1	4152	4152		75.043	14.749	1	3424700			64444	8454	45378	45443	69714	69714					-0.03791741661666492
QTFSSKTEW	9	Unmodified	_QTFSSKTEW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF;ENST00000575116.1_1_17:1555319-1557183:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2642211914062	2	557.264196	1112.51384	-0.77137	-0.00042986	0.17204	9.5874E-05	-0.59933	-0.00033398	557.2641196332396	44.712	0.72743	44.465	44.184	44.911	-0.24682					53	18	4	0	0	0	0.28753	3	4192	4171;4180;4192		77.318	22.541	1	3559100			64445	8454	45378	45443	69715;69716;69717	69717					-0.03791741661666492
QTFSSKTEW	9	Unmodified	_QTFSSKTEW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF;ENST00000575116.1_1_17:1555319-1557183:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.263916015625	2	557.264196	1112.51384	-1.0265	-0.00057202	0.27705	0.00015439	-0.74942	-0.00041763	557.2642026612991	44.706	0.87205	44.494	44.184	45.056	-0.21109					60	22	4	0	0	0	0.22902	1	4174	4174		85.161	19.695	1	3786200			64446	8454	45378	45443	69718	69718					-0.03791741661666492
QTFSVLIVN	9	Unmodified	_QTFSVLIVN_					0	0	0		ATP7B|p.G1149V|1|0.28|ENSG00000123191|chr13:51941191-51941191|C/A|missense_variant	ATP7B|p.G1149V|1|0.28|ENSG00000123191|chr13:51941191-51941191|C/A|missense_variant	ATP7B|p.G1149V|1|0.28|ENSG00000123191|chr13:51941191-51941191|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7902526855469	2	510.78985	1019.56515	-1.0112	-0.00051651	-0.08007	-4.0899E-05	-1.0913	-0.00055741	510.7900336028134	85.613	2.3944	85.636	84.535	86.93	0.023666					180	56	5	0	0	0	0.42604	1	10795	10795		64.207	2.0999	1	92456000			64447	159	45379	45444	69719	69719					0.056146271030456774
QTFTGHESNI	10	Unmodified	_QTFTGHESNI_					0	0	0		GNB1|p.D228N|1|0.05|ENSG00000078369|chr1:1790412-1790412|C/T|missense_variant	GNB1|p.D228N|1|0.05|ENSG00000078369|chr1:1790412-1790412|C/T|missense_variant	GNB1|p.D228N|1|0.05|ENSG00000078369|chr1:1790412-1790412|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.25390625	2	567.264727	1132.5149	-0.441	-0.00025016	0.38994	0.0002212	-0.05106	-2.8965E-05	567.264715486054	30.892	0.45839	30.714	30.453	30.912	-0.17817					25	10	3	0	0	0	0.03519	1	1996	1996		30.318	4.8675	1	318700			64448	17683	45380	45445	69720	69720					-0.04605527292778788
QTGAPSSVEI	10	Unmodified	_QTGAPSSVEI_					0	0	0			REV__ENST00000574992.5_1_17:79871999-79873399:-|nuORF	REV__ENST00000574992.5_1_17:79871999-79873399:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7845458984375	2	494.750921	987.48729	-0.29424	-0.00014558	1.7917	0.00088644	1.4974	0.00074086	494.75179661653095	32.522	0.36027	32.365	32.204	32.564	-0.15772					15	8	3	0	0	0	0.03519	1	2260	2260		85.161	35.719	1	72202	+		64449	35454	45381	45446	69721	69721					-0.006954305530030069
QTGDVQTIPA	10	Unmodified	_QTGDVQTIPA_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.290283203125	2	515.264196	1028.51384	0.21707	0.00011185	2.2164	0.001142	2.4335	0.0012539	515.2662797878633	70.165	0.36522	69.95	69.73	70.096	-0.21424					19	8	3	0	0	0	0.03519	1	8174	8174		72.879	0	1	99131	+		64450	28787	45382	45447	69722	69722					0.0007225833835491358
QTGKKHEKL	9	Unmodified	_QTGKKHEKL_					0	0	0		ENSG00000136866|ENST00000374227|ZFP37;nc|ENSG00000136866|Q9Y6Q3-3|ZFP37;nc|ENSG00000136866|Q9Y6Q3-2|ZFP37	ENSG00000136866|ENST00000374227|ZFP37	ENSG00000136866|ENST00000374227|ZFP37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7848510742188	2	534.811648	1067.60874	-0.67476	-0.00036087	0.26116	0.00013967	-0.4136	-0.0002212	534.8117177174929	56.096	0.61903	55.94	55.628	56.247	-0.15601					44	16	4	0	0	0	0.024409	1	6163	6163		33.922	18.28	1	2192500			64451	5057	45383	45448	69723	69723					0.07764236600178265
QTGNFLFFG	9	Unmodified	_QTGNFLFFG_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2818603515625	2	515.753267	1029.49198	-0.72605	-0.00037447	-0.243	-0.00012533	-0.96906	-0.00049979	515.7529930679166	65.223	0.17052	65.261	65.117	65.288	0.037384					8	4	2	0	0	0	0.024541	1	7625	7625		16.473	5.6076	1	299650			64452	18608	45384	45449	69724	69724					-0.02158501619578601
QTGRGGGAEAL	11	Unmodified	_QTGRGGGAEAL_					0	0	0		SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|87|3|anti-sense	SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|87|3|anti-sense	SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|87|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7721862792969	2	508.759612	1015.50467	-0.56285	-0.00028636	-2.6474	-0.0013469	-3.2102	-0.0016332	508.7581861391682	33.875	0.11641	33.875	33.816	33.932	0					4	2	2	0	0	0	0.024775	1	2477	2477		63.534	17.562	1	56306			64453	38000	45385	45450	69725	69725					-0.002460902273355714
QTGRRTRPL	9	Unmodified	_QTGRRTRPL_					0	0	0			REV__ENST00000369408.9_1_6:90305719-90326311:+|nuORF	REV__ENST00000369408.9_1_6:90305719-90326311:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3372192382812	2	542.820338	1083.62612	-0.97759	-0.00053066	2.7338	0.0014839	1.7562	0.00095329	542.8214988552002	48.972	0.3948	48.82	48.646	49.041	-0.15277					14	10	2	0	0	0	0.024495	1	4987	4987		26.693	0	1	199070	+		64454	31088	45386	45451	69726	69726					0.08765576925839014
QTHEEEDEP	9	Unmodified	_QTHEEEDEP_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.7980346679688	2	557.220182	1112.42581	0.36913	0.00020569	-3.1529	-0.0017569	-2.7838	-0.0015512	557.2182204669701	82.05	0.51459	81.821	81.65	82.165	-0.2289					15	11	2	0	0	0	0.024466	1	9867	9867		31.53	4.8369	1	69845	+		64455	20777	45387	45452	69727	69727					-0.12590407042966945
QTHEETQP	8	Unmodified	_QTHEETQP_					0	0	0			REV__ENST00000358120.2_1_1:248261979-248262807:+|nuORF	REV__ENST00000358120.2_1_1:248261979-248262807:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.217246	968.419939	-1.1524	-0.00055919	-4.0356	-0.0019581	-5.188	-0.0025173	485.2151713219846	39.882	1.1828	39.906	39.242	40.424	0.023727					45	32	2	0	0	0	0.027866	1	3472	3472		47.916	1.9636	1	196860	+		64456	30848	45388	45453	69728	69728					-0.06553460763950625
QTHELMMIQE	10	Unmodified	_QTHELMMIQE_					0	0	0			REV__nc|ENSG00000183347|Q6ZN66-2|GBP6	REV__nc|ENSG00000183347|Q6ZN66-2|GBP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.52618408203125	3	420.530141	1258.56859	3.0996	0.0013035	-2.6353	-0.0011082	0.46427	0.00019524	420.5290145022708	18.492	2.2232	18.249	17.825	20.048	-0.24256					67	44	2	0	0	0	1.1311	1	285	285		28.577	4.0575	1	498590	+		64457	27568	45389	45454	69729	69729					-0.050348141768836285
QTHFRSQL	8	Unmodified	_QTHFRSQL_					0	0	0		ENST00000356990.9_2_1:33413963-33415300:-|nuORF;ENST00000373456.11_1_1:33413963-33415300:-|nuORF	ENST00000356990.9_2_1:33413963-33415300:-|nuORF	ENST00000356990.9_2_1:33413963-33415300:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7691345214844	2	508.76724	1015.51993	-0.98741	-0.00050236	-0.56897	-0.00028948	-1.5564	-0.00079184	508.7671287500867	22.556	1.5159	22.63	22.172	23.688	0.073954					80	33	3	0	0	0	0.77775	1	804	804		60.972	0.85368	1	5476900			64458	12683	45390	45455	69730	69730					0.012788213605062992
QTHKLFAT	8	Unmodified	_QTHKLFAT_					0	0	0			REV__nc|ENSG00000111271|Q6JQN1-5|ACAD10	REV__nc|ENSG00000111271|Q6JQN1-5|ACAD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7809143066406	2	473.261259	944.507966	0.45336	0.00021456	-0.47442	-0.00022453	-0.021063	-9.9683E-06	473.26077796590243	23.648	0.94926	23.446	23.153	24.102	-0.20193					48	21	3	0	0	0	0.027866	1	998	998		19.104	0	1	1112900	+		64459	36565	45391	45456	69731	69731					0.033492046173250856
QTHSITIHNG	10	Unmodified	_QTHSITIHNG_					0	0	0			REV__ENSG00000106415|ENST00000223145|GLCCI1	REV__ENSG00000106415|ENST00000223145|GLCCI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.7484741210938	2	554.280712	1106.54687	0.90839	0.0005035	-2.1057	-0.0011672	-1.1973	-0.00066366	554.2798525742808	36.207	0.32968	36.009	35.843	36.172	-0.19829					13	8	2	0	0	0	0.03519	1	2809	2809		30.318	8.3578	1	99445	+		64460	21619	45392	45457	69732	69732					-0.0021411481895938778
QTHVIGKP	8	Unmodified	_QTHVIGKP_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.73028564453125	2	440.255977	878.497401	0.088067	3.8772E-05	0.24786	0.00010912	0.33593	0.0001479	440.25588687971475	33.975	1.0541	33.971	33.715	34.769	-0.0045624					48	26	3	0	0	0	0.027866	1	2555	2555		38.806	5.2906	1	1054900	+		64461	24983	45393	45458	69733	69733					0.05329221962904285
QTIADKHGK	9	Unmodified	_QTIADKHGK_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.2747802734375	2	499.274898	996.535243	0.05054	2.5234E-05	-0.34811	-0.0001738	-0.29757	-0.00014857	499.27467580145367	20.201	0.98216	19.978	19.631	20.613	-0.22344					46	19	4	0	0	0	0.247	1	485	485		82.75	13.964	1	721770	+		64462	20302	45394	45459	69734	69734					0.036836881577073655
QTIADVKR	8	Unmodified	_QTIADVKR_					0	0	0		nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	nc|ENSG00000078699|O43439-2|CBFA2T2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.753173828125	2	465.771991	929.529429	-0.14417	-6.7149E-05	-0.26893	-0.00012526	-0.4131	-0.00019241	465.77191834607277	37.318	0.4987	37.255	37.091	37.589	-0.063389					19	13	2	0	0	0	0.027866	1	3051	3051		14.137	0	1	118340			64463	1644	45395	45460	69735	69735					0.061845896460340555
QTIDYVYPMV	10	Unmodified	_QTIDYVYPMV_					0	0	0		ENST00000443084.1_1_2:200524349-200524604:+|nuORF	ENST00000443084.1_1_2:200524349-200524604:+|nuORF	ENST00000443084.1_1_2:200524349-200524604:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.8803405761719	3	410.20213	1227.58456	0.51077	0.00020952	0.15438	6.3327E-05	0.66515	0.00027284	410.2020586679092	33.695	0.74052	33.695	33.388	34.129	0					40	19	3	0	0	0	0.03519	1	2426	2426		11.636	0	1	325360			64464	14395	45396	45461	69736	69736					-0.020127846683863027
QTIIHATHS	9	Unmodified	_QTIIHATHS_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2557067871094	2	504.267073	1006.51959	-0.34326	-0.0001731	2.7779	0.0014008	2.4346	0.0012277	504.2681944489757	38.793	0.26731	38.568	38.402	38.669	-0.2257					10	6	2	0	0	0	0.024541	1	3229	3229		10.866	0	1	139800			64465	9909	45397	45462	69737	69737					0.016594016406543233
QTIIICIV	8	Unmodified	_QTIIICIV_					0	0	0		ENST00000536683.5_1_11:94966793-94966961:+|nuORF	ENST00000536683.5_1_11:94966793-94966961:+|nuORF	ENST00000536683.5_1_11:94966793-94966961:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.24786376953125	2	451.772614	901.530675	1.8624	0.0008414	1.4595	0.00065934	3.3219	0.0015007	451.7729967389875	23.786	0.61776	23.595	23.4	24.018	-0.19117					21	13	3	0	0	0	0.027866	1	975	975		62.978	11.643	1	119710			64466	16364	45398	45463	69738	69738					0.07597087690578519
QTILDKEE	8	Unmodified	_QTILDKEE_					0	0	0		ENSG00000183891|ENST00000333610|TTC32	ENSG00000183891|ENST00000333610|TTC32	ENSG00000183891|ENST00000333610|TTC32	MSMS	OPSCC_39_ClassI_Rep-1	1	488.25408935546875	2	488.253297	974.492041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.296	1	29.296	28.796	29.796	0								0	0	0	0.42824	1	1783	1783		63.306	1.1989	1				64467	9291	45399	45464	69739	69739					0.0037745358977190335
QTILQGYS	8	Unmodified	_QTILQGYS_					0	0	0		L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|8|1|sense;L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|117|2|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|153|3|sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|151|3|sense	L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|8|1|sense	L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|8|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.2374267578125	2	455.23745	908.460347	0.48569	0.0002211	-1.1699	-0.00053256	-0.68417	-0.00031146	455.23681456841655	102.94	0.65137	102.81	102.49	103.14	-0.12724					36	15	3	0	0	0	1.0009	1	12797	12797		37.159	0	1	1184800			64468	17841	45400	45465	69740	69740					0.002455056264693667
QTIRPAQP	8	Unmodified	_QTIRPAQP_					0	0	0			REV__ENST00000321248.4_1_10:134258699-134261562:+|nuORF	REV__ENST00000321248.4_1_10:134258699-134261562:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.26898193359375	2	455.758884	909.503215	0.41636	0.00018976	-0.20392	-9.2938E-05	0.21245	9.6824E-05	455.7585412647314	47.131	0.75663	47.131	46.772	47.529	0					38	20	3	0	0	0	0.027866	1	4765	4765		23.042	0	1	2761600	+		64469	30342	45401	45466	69741	69741					0.04484320474557535
QTITANKIK	9	Unmodified	_QTITANKIK_					0	0	0			REV__nc|ENSG00000120156|Q02763-3|TEK	REV__nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.8088073730469	2	508.808574	1015.60259	-0.58446	-0.00029738	0.19385	9.8632E-05	-0.39061	-0.00019874	508.8086121701511	29.074	0.89566	28.902	28.594	29.49	-0.17258					57	20	5	0	0	0	0.28753	1	1758	1758		77.318	0	1	1205700	+		64470	22514	45402	45467	69742	69742					0.09541718368654983
QTIVELFF	8	Unmodified	_QTIVELFF_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2918395996094	2	498.773668	995.532783	-0.19979	-9.965E-05	-3.8973	-0.0019439	-4.0971	-0.0020435	498.77135818163214	47.824	1.0989	47.67	47.196	48.295	-0.15301					42	32	2	0	0	0	0.027866	1	4787	4787		37.159	0	1	167920			64471	1009	45403	45468	69743	69743					0.03483839700038516
QTKAPKEP	8	Unmodified	_QTKAPKEP_					0	0	0			REV__nc|ENSG00000143248|O15539-3|RGS5	REV__nc|ENSG00000143248|O15539-3|RGS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2812194824219	2	449.753267	897.491981	0.2851	0.00012822	-0.1084	-4.8753E-05	0.1767	7.947E-05	449.7532420854134	50.695	0.44312	50.514	50.317	50.76	-0.18071					17	11	2	0	0	0	0.027866	1	5196	5196		35.618	3.6634	1	226070	+		64472	24216	45404	45469	69744	69744					0.039134983804160584
QTKEWTTL	8	Unmodified	_QTKEWTTL_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.247802734375	2	503.763832	1005.51311	-0.68884	-0.00034701	-0.46058	-0.00023202	-1.1494	-0.00057904	503.7635505222182	60.748	0.48664	60.748	60.546	61.032	0					18	12	2	0	0	0	0.027866	1	7035	7035		14.865	0	1	272430			64473	3717	45405	45470	69745	69745					0.010574636892783928
QTKFQELQL	9	Unmodified	_QTKFQELQL_					0	0	0		nc|ENSG00000186049|Q86Y46-2|KRT73;ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84;CON__Q9R0H5;CON__Q6NXH9;ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2	nc|ENSG00000186049|Q86Y46-2|KRT73	nc|ENSG00000186049|Q86Y46-2|KRT73	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3090209960938	2	567.811313	1133.60807	0.3344	0.00018988	-1.4225	-0.00080772	-1.0881	-0.00061784	567.8103965361772	69.529	1.6331	69.236	68.405	70.038	-0.29292					131	41	6	0	0	0	0.15366	1	8371	8371		98.629	8.0285	1	12873000		+	64474	550	45406	45471	69746	69746					0.04661397160475644
QTKGKRRAK	9	Unmodified	_QTKGKRRAK_					0	0	0		ENST00000495036.5_1_7:120690925-120691258:+|nuORF	ENST00000495036.5_1_7:120690925-120691258:+|nuORF	ENST00000495036.5_1_7:120690925-120691258:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3353881835938	2	536.838531	1071.66251	-0.36728	-0.00019717	-3.8723	-0.0020788	-4.2396	-0.002276	537.3375736113546	18.103	0.44591	17.897	17.714	18.16	-0.20669					27	8	5	0	0	0	0.024438	1	252	252		36.447	13.404	1	317780			64475	15540	45407	45472	69747	69747					0.12954453822521828
QTKGKRRAK	9	Unmodified	_QTKGKRRAK_					0	0	0		ENST00000495036.5_1_7:120690925-120691258:+|nuORF	ENST00000495036.5_1_7:120690925-120691258:+|nuORF	ENST00000495036.5_1_7:120690925-120691258:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.838531	1071.66251	0.70241	0.00037708	-4.7001	-0.0025232	-3.9976	-0.0021461	537.3371314946938	18.085	0.44267	17.929	17.705	18.148	-0.15637	0.015981	-0.00046415	NaN	36.447	27	8	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317460			64476	15540	45407	45472							0.12954453822521828
QTKGLSSLY	9	Unmodified	_QTKGLSSLY_					0	0	0			REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.77191162109375	2	498.771657	995.528761	1.8025	0.00089903	-2.0808	-0.0010379	-0.27834	-0.00013883	498.77031789802	24.484	0.74038	24.304	23.938	24.678	-0.18089					45	16	4	0	0	0	0.43628	1	1047	1047		63.534	0	1	1385900	+		64477	23294	45408	45473	69748	69748					0.03081750206331435
QTKILFVIR	9	Unmodified	_QTKILFVIR_					0	0	0			REV__sp|P03184|UL32_EBVB9PackagingproteinUL32homologOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFLF1PE=1SV=1	REV__sp|P03184|UL32_EBVB9PackagingproteinUL32homologOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFLF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.325439453125	2	559.358234	1116.70191	-0.061675	-3.4498E-05	-0.66883	-0.00037411	-0.7305	-0.00040861	559.3578088604011	68.668	1.3834	68.376	67.819	69.202	-0.29266					61	35	2	0	0	0	0.024466	1	8173	8173		31.53	9.8275	1	176560	+		64478	37527	45409	45474	69749	69749					0.14823161053391232
QTKIPPIYLYE	11	Unmodified	_QTKIPPIYLYE_					0	0	0			REV__ENST00000342287.9_2_9:128728684-128729074:+|nuORF	REV__ENST00000342287.9_2_9:128728684-128729074:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.279296875	3	455.586861	1363.73875	0.025759	1.1735E-05	2.7695	0.0012617	2.7952	0.0012735	455.5877377499592	24.476	0.28478	24.26	24.134	24.418	-0.2151					8	6	2	0	0	0	0.024735	1	1094	1094		21.78	9.3476	1	47306	+		64479	30645	45410	45475	69750	69750					0.0714336808864573
QTKIYQLL	8	Unmodified	_QTKIYQLL_					0	0	0			REV__nc|ENSG00000010030|Q9Y603-3|ETV7	REV__nc|ENSG00000010030|Q9Y603-3|ETV7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2478942871094	2	503.800217	1005.58588	-0.58826	-0.00029636	-2.6332	-0.0013266	-3.2215	-0.001623	503.797487012788	60.908	0.56293	60.979	60.677	61.239	0.071129					26	14	3	0	0	0	0.027866	1	6972	6972		68.787	10.976	1	250440	+		64480	19898	45411	45476	69751	69751					0.08331217482702868
QTKKELKP	8	Unmodified	_QTKKELKP_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2868957519531	2	486.297842	970.581131	-0.096179	-4.6772E-05	1.0601	0.00051551	0.96389	0.00046874	486.2979533933919	38.466	0.48137	38.248	38.049	38.53	-0.21849					19	12	2	0	0	0	0.027866	1	3195	3195		25.574	2.5316	1	163510	+		64481	26603	45412	45477	69752	69752					0.09466333339946686
QTKKEYVVS	9	Unmodified	_QTKKEYVVS_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ANKRD12|p.R1787Gfs*12|1|0.19|ENSG00000101745|chr18:9258621-9258621|G/-|frameshift_variant	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2565307617188	2	541.298039	1080.58152	-0.65377	-0.00035389	0.98421	0.00053275	0.33043	0.00017886	541.2983947206909	48.095	0.6632	47.908	47.635	48.298	-0.18684					43	17	3	0	0	0	0.023061	1	4797	4797		69.628	31.816	1	1231000			64482	2344	45413	45478	69753	69753					0.04445708269122406
QTKKKRKTKH	10	Unmodified	_QTKKKRKTKH_					0	0	0		ENSG00000284484|ENST00000640173|CPHXL2	ENSG00000284484|ENST00000640173|CPHXL2	ENSG00000284484|ENST00000640173|CPHXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.3033142089844	3	428.273722	1281.79934	0.51401	0.00022014	1.5549	0.00066594	2.0689	0.00088607	428.27421425095514	63.257	0.45095	62.999	62.75	63.201	-0.25824					24	10	3	0	0	0	0.03519	1	7099	7099		18.531	0	1	400580			64483	11094	45414	45479	69754	69754					0.16970942982243287
QTKPVLEYYQ	10	Unmodified	_QTKPVLEYYQ_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.55487060546875	3	423.555561	1267.64485	0.20946	8.872E-05	-2.4303	-0.0010294	-2.2208	-0.00094063	423.5545790680213	24.148	1.2094	23.933	23.599	24.809	-0.2151					61	27	4	0	0	0	0.64214	1	1031	1031		72.243	17.9	1	4738600			64484	5996	45415	45480	69755	69755					0.021736489863769748
QTKRRVLS	8	Unmodified	_QTKRRVLS_					0	0	0		nc|ENSG00000228459|A6NGU7-2|LINC01546	nc|ENSG00000228459|A6NGU7-2|LINC01546	nc|ENSG00000228459|A6NGU7-2|LINC01546	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.78533935546875	2	494.306532	986.598512	0.33371	0.00016496	3.6955	0.0018267	4.0293	0.0019917	494.30830106185545	56.841	0.53736	56.616	56.386	56.923	-0.2248					22	13	2	0	0	0	0.027866	1	6184	6184		55.504	0	1	182140			64485	18741	45416	45481	69756	69756					0.10467673665607435
QTKRVKANL	9	Unmodified	_QTKRVKANL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.3273315429688	2	529.327465	1056.64038	0.032581	1.7246E-05	-0.83962	-0.00044444	-0.80704	-0.00042719	529.3271126379678	19.645	0.63422	19.484	19.282	19.916	-0.16079					18	12	3	0	0	0	0.39228	1	448	448		66.429	4.3219	1	626370			64486	2185	45417	45482	69757	69757					0.11432229354113588
QTKRVKANL	9	Unmodified	_QTKRVKANL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MSMS	OPSCC_40_ClassI_Rep-2	5	529.3276977539062	2	529.327465	1056.64038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.709	1	19.509	19.009	20.009	-0.2001								0	0	0	0.066877	1	449	449		101.6	19.36	1				64487	2185	45417	45482	69758	69758					0.11432229354113588
QTKSKPVNI	9	Unmodified	_QTKSKPVNI_					0	0	0		ENST00000237281.4_1_6:146120505-146120589:-|nuORF	ENST00000237281.4_1_6:146120505-146120589:-|nuORF	ENST00000237281.4_1_6:146120505-146120589:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.281982421875	2	507.800749	1013.58694	-0.28459	-0.00014452	0.50016	0.00025398	0.21556	0.00010946	507.80043690248266	24.015	0.47744	23.835	23.607	24.084	-0.17989					15	10	2	0	0	0	0.024477	1	995	995		27.882	6.9353	1	69747			64488	11257	45418	45483	69759	69759					0.08069431851606623
QTKVHAELA	9	Unmodified	_QTKVHAELA_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7664794921875	2	498.777274	995.539994	-0.30705	-0.00015315	-0.12006	-5.9883E-05	-0.42711	-0.00021303	498.7771132327402	41.854	1.3451	41.722	41.146	42.491	-0.13219					72	38	4	0	0	0	0.024436	1	3805	3805		30.504	0	1	1525800			64489	4575;18273	45419	45484	69760	69760					0.04204572300454856
QTKVPKVGR	9	Unmodified	_QTKVPKVGR_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.33135986328125	2	506.816733	1011.61891	-1.1127	-0.00056393	0.82541	0.00041833	-0.28729	-0.0001456	506.81707395787663	37.758	0.70281	37.758	37.233	37.936	0					27	19	2	0	0	0	0.024323	1	3090	3090		44.117	26.752	1	316550			64490	7503	45420	45485	69761	69761					0.1135684432541666
QTKVPKVGR	9	Unmodified	_QTKVPKVGR_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.816733	1011.61891	-0.092583	-4.6922E-05	-0.59876	-0.00030346	-0.69135	-0.00035039	506.8164148124459	37.721	0.5734	37.541	37.165	37.739	-0.17929	-0.096122	-0.00069347	NaN	96.19	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344670			64491	7503	45420	45485							0.1135684432541666
QTKVPKVGR	9	Unmodified	_QTKVPKVGR_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.816733	1011.61891	-1.0959	-0.00055543	0.14176	7.1845E-05	-0.95416	-0.00048358	506.81667515784017	37.735	0.49451	37.515	37.231	37.726	-0.2195	-0.12221	5.7144E-05	NaN	96.19	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333750			64492	7503	45420	45485							0.1135684432541666
QTKVPKVGR	9	Unmodified	_QTKVPKVGR_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.816733	1011.61891	-1.2882	-0.00065287	0.19419	9.8417E-05	-1.094	-0.00055445	506.8167086168122	37.724	0.52842	37.505	37.263	37.792	-0.21848	-0.13233	0.00011029	NaN	96.19	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241370			64493	7503	45420	45485							0.1135684432541666
QTKVRKKV	8	Unmodified	_QTKVRKKV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.82861328125	2	493.827101	985.639649	0.80155	0.00039583	1.8671	0.00092203	2.6687	0.0013179	493.8278946338811	105.81	0.2854	105.81	105.65	105.93	0					15	9	2	0	0	0	1.0574	1	13588	13588		19.104	4.2386	1	110210			64494	4305	45421	45486	69762	69762					0.14625434705078533
QTKYTFVV	8	Unmodified	_QTKYTFVV_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7250671386719	2	493.271293	984.528032	0.44239	0.00021822	-1.764	-0.00087013	-1.3216	-0.00065191	493.27051033989136	71.995	0.40879	72.004	71.841	72.25	0.0097733					11	10	2	0	0	0	0.027866	1	8658	8658		23.042	0	1	159550			64495	8922	45422	45487	69763	69763					0.03514955557284338
QTLCVIKH	8	Unmodified	_QTLCVIKH_					0	0	0			REV__ENST00000296161.8_1_3:122292171-122292468:+|nuORF	REV__ENST00000296161.8_1_3:122292171-122292468:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.3104553222656	2	471.265487	940.516422	0.58846	0.00027732	3.5463	0.0016713	4.1348	0.0019486	471.2669765118884	19.758	0.90901	19.758	19.07	19.979	0					40	18	5	0	0	0	0.027866	1	469	469		35.618	18.253	1	556160	+		64496	29988	45423	45488	69764	69764					0.04378435262287894
QTLCWLLF	8	Unmodified	_QTLCWLLF_					0	0	0			REV__SRD5A3|p.L148Gfs*21|1|0.39|ENSG00000128039|chr4:55364115-55364116|-/TGTGGCTGCACAGCTTACGAAGACTCTTCGAG|frameshift_variant	REV__SRD5A3|p.L148Gfs*21|1|0.39|ENSG00000128039|chr4:55364115-55364116|-/TGTGGCTGCACAGCTTACGAAGACTCTTCGAG|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2703857421875	2	512.270238	1022.52592	0.13357	6.8426E-05	1.972	0.0010102	2.1056	0.0010786	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	1.0338	1	12986	12986		31.955	4.0726	1	236480	+		64497	22963	45424	45489	69765	69765					0.01556203547829682
QTLDRERA	8	Unmodified	_QTLDRERA_					0	0	0		ENSG00000163516|ENST00000323348|ANKZF1;ENST00000474225.5_1_2:220094544-220097914:+|nuORF;ENST00000486203.5_1_2:220094592-220097474:+|nuORF;ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF;ENST00000490526.1_1_2:220097047-220098161:+|nuORF	ENSG00000163516|ENST00000323348|ANKZF1	ENSG00000163516|ENST00000323348|ANKZF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7507629394531	2	494.762155	987.509757	-0.1106	-5.4718E-05	1.3894	0.00068741	1.2788	0.00063269	494.7627863983726	45.78	0.3157	45.519	45.35	45.666	-0.26118					11	8	2	0	0	0	0.027866	1	4377	4377		38.806	3.6054	1	116510			64498	7093	45425	45490	69766	69766					0.015502136352779416
QTLGLLYIP	9	Unmodified	_QTLGLLYIP_					0	0	0			REV__nc|ENSG00000231852|P08686-2|CYP21A2	REV__nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.75238037109375	2	509.302593	1016.59063	-0.95291	-0.00048532	-3.0052	-0.0015306	-3.9582	-0.0020159	509.30116971580753	43.784	0.6787	43.64	43.279	43.958	-0.14471					39	18	3	0	0	0	0.024405	1	4084	4084		44.117	8.4985	1	642940	+		64499	28899	45426	45491	69767	69767					0.08300101625445677
QTLGRLKSL	9	Unmodified	_QTLGRLKSL_					0	0	0		nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.77264404296875	2	508.316566	1014.61858	-0.42208	-0.00021455	-0.56091	-0.00028512	-0.98299	-0.00049967	508.3162988857587	33.711	0.54251	33.706	33.486	34.029	-0.0045624					33	13	3	0	0	0	0.022882	1	2433	2433		75.043	29.071	1	515010			64500	8763	45427	45492	69768	69768					0.11185424605560002
QTLGRLKSL	9	Unmodified	_QTLGRLKSL_					0	0	0		nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.316566	1014.61858	-0.069276	-3.5214E-05	-0.132	-6.7096E-05	-0.20127	-0.00010231	508.316368008185	33.895	0.70208	33.671	33.404	34.106	-0.22412	-0.049515	-4.7069E-05	NaN	75.043	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	634770			64501	8763	45427	45492							0.11185424605560002
QTLGRLKSL	9	Unmodified	_QTLGRLKSL_					0	0	0		nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.316566	1014.61858	-0.4678	-0.00023779	0.17916	9.1072E-05	-0.28864	-0.00014672	508.3164969039023	33.829	0.53378	33.629	33.404	33.938	-0.20019	-0.09099	0.00026927	NaN	75.043	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780280			64502	8763	45427	45492							0.11185424605560002
QTLGRLKSL	9	Unmodified	_QTLGRLKSL_					0	0	0		nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.316566	1014.61858	-1.4113	-0.0007174	0.7953	0.00040426	-0.61602	-0.00031313	508.3168207793228	33.82	0.69797	33.645	33.391	34.089	-0.17557	-0.075417	0.00089565	NaN	75.043	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	786520			64503	8763	45427	45492							0.11185424605560002
QTLHCLTAR	9	Unmodified	_QTLHCLTAR_					0	0	0			REV__ENSG00000105559|ENST00000263265|PLEKHA4	REV__ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.8572998046875	2	521.776751	1041.53895	0.15126	7.8923E-05	1.4419	0.00075233	1.5931	0.00083125	521.7774680172599	75.902	0.44666	75.913	75.681	76.128	0.011635					23	11	3	0	0	0	0.024447	1	9260	9260		40.778	17.736	1	309330	+		64504	21538	45428	45493	69769	69769					0.01984034659903955
QTLILSLVI	9	Unmodified	_QTLILSLVI_					0	0	0		RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant	RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant	RIC8B|p.T475Yfs*23|1|0.1|ENSG00000111785|chr12:106860383-106860384|-/TATGGCAGTAA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.313232421875	2	500.326068	998.637583	-0.14733	-7.3712E-05	0.012393	6.2005E-06	-0.13493	-6.7511E-05	500.3261485620515	76.1	0.15098	75.841	75.747	75.898	-0.25866					5	3	2	0	0	0	0.024374	1	9030	9030		49.442	0	1	166230			64505	37836	45429	45494	69770	69770					0.1382096117661149
QTLIWTAHQPL	11	Unmodified	_QTLIWTAHQPL_					0	0	0		ENST00000370526.3_1_X:140270028-140270391:-|nuORF	ENST00000370526.3_1_X:140270028-140270391:-|nuORF	ENST00000370526.3_1_X:140270028-140270391:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8815002441406	3	436.575067	1306.70337	2.473	0.0010796	-2.4337	-0.0010625	0.039201	1.7114E-05	436.57380034369834	24.364	0.74083	24.183	23.893	24.634	-0.18089					44	16	4	0	0	0	0.02476	1	1027	1027		32.034	0	1	388080			64506	12964	45430	45495	69771	69771					0.06228750351488088
QTLKPLLLL	9	Unmodified	_QTLKPLLLL_					0	0	0			REV__ENST00000512188.1_1_4:174320275-174324278:-|nuORF	REV__ENST00000512188.1_1_4:174320275-174324278:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8187255859375	2	519.84971	1037.68487	0.10738	5.5821E-05	-1.5204	-0.00079036	-1.413	-0.00073454	519.8488943207636	71.358	0.11362	71.358	71.301	71.415	0					4	2	2	0	0	0	0.024523	1	8648	8648		29.15	0	1	125070	+		64507	29996	45431	45496	69772	69772					0.16753240447633289
QTLKQRLY	8	Unmodified	_QTLKQRLY_					0	0	0		ENST00000374902.8_1_9:103111467-103111593:-|nuORF	ENST00000374902.8_1_9:103111467-103111593:-|nuORF	ENST00000374902.8_1_9:103111467-103111593:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7697143554688	2	525.308741	1048.60293	-1.0313	-0.00054173	4.2315	0.0022228	3.2002	0.0016811	525.3095718437289	34.091	0.19126	33.915	33.781	33.972	-0.17557					7	4	2	0	0	0	0.027866	1	2452	2452		42.396	19.354	1	34312			64508	13141	45432	45497	69773	69773					0.08057138088520333
QTLLKRPH	8	Unmodified	_QTLLKRPH_					0	0	0			REV__ENSG00000213401|ENST00000393869|MAGEA12	REV__ENSG00000213401|ENST00000393869|MAGEA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.26861572265625	2	496.803626	991.592698	-0.66115	-0.00032846	1.8924	0.00094015	1.2313	0.00061169	496.8035178019911	36.192	0.90439	36.192	35.57	36.474	0					30	24	2	0	0	0	0.027866	1	2881	2881		58.782	18.004	1	120530	+		64509	19482	45433	45498	69774	69774					0.0965657515392877
QTLLLMVL	8	Unmodified	_QTLLLMVL_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000529638.1_1_8:145139098-145139832:+|nuORF;ENST00000527653.1_1_8:145139258-145139832:+|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8031311035156	2	465.788264	929.561975	0.2987	0.00013913	3.9408	0.0018356	4.2395	0.0019747	465.7899993509763	32.13	0.47729	31.937	31.728	32.205	-0.19261					20	10	3	0	0	0	0.027866	1	2218	2218		53.351	0	1	124650			64510	10056	45434	45499	69775	69775					0.09437660724688612
QTLLTKQET	9	Unmodified	_QTLLTKQET_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2556762695312	2	531.295496	1060.57644	-0.89409	-0.00047503	2.4738	0.0013143	1.5797	0.00083929	531.2969100526913	29.031	0.52633	29.034	28.713	29.24	0.0031357					16	12	2	0	0	0	0.024389	1	1695	1695		35.152	10.949	1	70675			64511	10033	45435	45500	69776	69776					0.0485740440653899
QTLLTPVVSC	10	Unmodified	_QTLLTPVVSC_					0	0	0		ENSG00000182168|ENST00000453304|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8095092773438	2	530.788992	1059.56343	1.0336	0.0005486	2.6336	0.0013979	3.6672	0.0019465	530.7903637709635	17.637	0.24928	17.483	17.358	17.607	-0.15403					6	4	2	0	0	0	0.03519	1	198	198		28.081	5.039	1	12182			64512	9106	45436	45501	69777	69777					0.03603250022774773
QTLNRYEW	8	Unmodified	_QTLNRYEW_					0	0	0			REV__LPA|p.C1574R|1|0.54|ENSG00000198670|chr6:160557483-160557483|A/G|missense_variant	REV__LPA|p.C1574R|1|0.54|ENSG00000198670|chr6:160557483-160557483|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.3236083984375	2	555.272355	1108.53016	0.024987	1.3874E-05	3.6884	0.0020481	3.7134	0.002062	555.2740563883639	50.427	0.40401	50.321	50.165	50.569	-0.10558					18	10	2	0	0	0	0.027866	1	5156	5156		32.812	4.7309	1	312100	+		64513	36315	45437	45502	69778	69778					-0.019766157048934474
QTLNRYEW	8	Unmodified	_QTLNRYEW_					0	0	0			REV__LPA|p.C1574R|1|0.54|ENSG00000198670|chr6:160557483-160557483|A/G|missense_variant	REV__LPA|p.C1574R|1|0.54|ENSG00000198670|chr6:160557483-160557483|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.3243408203125	2	555.272355	1108.53016	0.20379	0.00011316	3.2264	0.0017915	3.4301	0.0019047	555.2739910138959	50.756	0.47781	50.479	50.224	50.702	-0.27643					19	12	2	0	0	0	0.027866	1	5187	5187		44.117	9.9443	1	452540	+		64514	36315	45437	45502	69779	69779					-0.019766157048934474
QTLPGPHLPL	10	Unmodified	_QTLPGPHLPL_					0	0	0		ENST00000592172.5_1_19:6026246-6110452:-|nuORF	ENST00000592172.5_1_19:6026246-6110452:-|nuORF	ENST00000592172.5_1_19:6026246-6110452:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2784423828125	2	536.811116	1071.60768	-0.78963	-0.00042388	-3.4608	-0.0018578	-4.2505	-0.0022817	536.8091891675872	29.862	0.58774	29.617	29.317	29.905	-0.24415					33	13	4	0	0	0	0.03519	1	1855	1855		39.253	0	1	457310			64515	17366	45438	45503	69780	69780					0.07474022231281197
QTLPVREP	8	Unmodified	_QTLPVREP_					0	0	0		ENSG00000154654|ENST00000400546|NCAM2	ENSG00000154654|ENST00000400546|NCAM2	ENSG00000154654|ENST00000400546|NCAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2952880859375	2	470.266542	938.51853	1.2595	0.00059228	3.3273	0.0015647	4.5868	0.002157	470.268001065198	62.97	0.79999	63.024	62.719	63.519	0.054104					32	20	3	0	0	0	0.027866	1	7307	7307		25.574	0	1	993040			64516	6424	45439	45504	69781	69781					0.0468118727176261
QTLQHNSIN	9	Unmodified	_QTLQHNSIN_					0	0	0			REV__ENSG00000077274|ENST00000324068|CAPN6	REV__ENSG00000077274|ENST00000324068|CAPN6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7694091796875	2	527.767437	1053.52032	-0.3986	-0.00021037	4.4281	0.002337	4.0295	0.0021267	527.7698209015659	53.293	1.4699	53.388	52.641	54.111	0.095669					132	40	5	0	0	0	0.16638	1	5681	5681		95.815	13.065	1	8372300	+		64517	20586	45440	45505	69782	69782					-0.004298037102671515
QTLRRIIS	8	Unmodified	_QTLRRIIS_					0	0	0		ENST00000392783.6_3_2:160472966-160473122:-|nuORF	ENST00000392783.6_3_2:160472966-160473122:-|nuORF	ENST00000392783.6_3_2:160472966-160473122:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7976989746094	2	493.808908	985.603263	-0.97375	-0.00048084	4.0819	0.0020157	3.1081	0.0015348	493.81105289485185	51.009	0.15011	51.096	51.039	51.189	0.087006					6	3	2	0	0	0	0.027866	1	5309	5309		30.504	7.4612	1	125680			64518	13426	45441	45506	69783	69783					0.10988557808377664
QTLSASPEI	9	Unmodified	_QTLSASPEI_					0	0	0			REV__HERC2|p.I4701T|1|0.21|ENSG00000128731|chr15:28113201-28113201|A/G|missense_variant	REV__HERC2|p.I4701T|1|0.21|ENSG00000128731|chr15:28113201-28113201|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.77606201171875	2	473.248015	944.481476	0.72385	0.00034256	0.091172	4.3147E-05	0.81502	0.00038571	473.24794285851743	98.555	0.63674	98.565	98.232	98.869	0.010239					17	14	2	0	0	0	0.024319	1	12546	12546		31.53	5.9558	1	45078	+		64519	36096	45442	45507	69784	69784					0.007014709353256876
QTLSFQVLM	9	Unmodified	_QTLSFQVLM_					0	0	0		ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2728881835938	2	533.78371	1065.55287	-0.52284	-0.00027908	2.4248	0.0012943	1.902	0.0010152	533.7853138248544	55.925	0.22076	55.769	55.666	55.887	-0.15601					8	5	2	0	0	0	0.024418	1	6160	6160		45.972	29.499	1	97175			64520	6266	45443	45508	69785	69785					0.022712673683372486
QTLSFQVLM	9	Unmodified	_QTLSFQVLM_					0	0	0		ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.78371	1065.55287	-0.34901	-0.0001863	-4.7854	-0.0025544	-5.1344	-0.0027407	534.2806819583612	56.105	0.30048	55.889	55.737	56.038	-0.21607	0.060007	-0.0046157	NaN	23.523	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248460			64521	6266	45443	45508							0.022712673683372486
QTLSRPPTP	9	Unmodified	_QTLSRPPTP_					0	0	0		ENSG00000105559|ENST00000263265|PLEKHA4;nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	ENSG00000105559|ENST00000263265|PLEKHA4	ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7666931152344	2	498.777274	995.539994	0.38366	0.00019136	-0.54417	-0.00027142	-0.16051	-8.006E-05	498.7767580387847	41.596	1.3747	41.596	40.981	42.355	0					70	39	3	0	0	0	0.024021	1	3777	3777		58.782	19.976	1	1828100			64522	2692	45444	45509	69786	69786					0.04204572300466225
QTLSVNQQW	9	Unmodified	_QTLSVNQQW_					0	0	0		nc|ENSG00000120253|Q8NFH3-2|NUP43;ENSG00000120253|ENST00000340413|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.278076171875	2	552.277638	1102.54072	-0.95644	-0.00052822	0.90455	0.00049956	-0.051883	-2.8654E-05	552.2779226605629	60.754	0.95464	60.578	59.96	60.914	-0.1761					47	23	3	0	0	0	0.69446	1	6794	6794		46.457	2.806	1	1249600			64523	3800	45445	45510	69787	69787					-0.0064463305047866015
QTLSVNQQW	9	Unmodified	_QTLSVNQQW_					0	0	0		nc|ENSG00000120253|Q8NFH3-2|NUP43;ENSG00000120253|ENST00000340413|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	552.277638	1102.54072	-2.0879	-0.0011531	-2.7231	-0.0015039	-4.811	-0.002657	552.2755951666855	60.208	0.26203	60.287	60.203	60.465	0.078888	-0.28235	-0.0038013	NaN	46.457	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52854			64524	3800	45445	45510							-0.0064463305047866015
QTLSVNQQW	9	Unmodified	_QTLSVNQQW_					0	0	0		nc|ENSG00000120253|Q8NFH3-2|NUP43;ENSG00000120253|ENST00000340413|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.277638	1102.54072	-0.32516	-0.00017958	0.44889	0.00024791	0.12373	6.8334E-05	552.2776647209004	60.887	0.75478	60.681	60.336	61.091	-0.20599	0.1118	-0.00029771	NaN	46.457	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158700			64525	3800	45445	45510							-0.0064463305047866015
QTLSVNQQW	9	Unmodified	_QTLSVNQQW_					0	0	0		nc|ENSG00000120253|Q8NFH3-2|NUP43;ENSG00000120253|ENST00000340413|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	nc|ENSG00000120253|Q8NFH3-2|NUP43	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.277638	1102.54072	-0.92487	-0.00051079	0.92657	0.00051172	0.0016967	9.3707E-07	552.2779924673059	60.985	0.79923	60.731	60.421	61.221	-0.25373	0.16167	0.00022992	NaN	46.457	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132600			64526	3800	45445	45510							-0.0064463305047866015
QTLSYSSR	8	Unmodified	_QTLSYSSR_					0	0	0			REV__ENSG00000169327|ENST00000304418|OR5AU1	REV__ENSG00000169327|ENST00000304418|OR5AU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7718811035156	2	471.237981	940.461409	0.64449	0.00030371	-0.76236	-0.00035925	-0.11787	-5.5544E-05	471.2376930882899	40.182	0.2225	40.182	40.024	40.247	0					9	5	2	0	0	0	0.027866	1	3493	3493		54.776	0	1	86000	+		64527	26354	45446	45511	69788	69788					-0.011202800046135053
QTLVVQFTV	9	Unmodified	_QTLVVQFTV_					0	0	0		ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENSG00000179218|ENST00000316448|CALR	ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.299072265625	2	517.797675	1033.5808	-0.61168	-0.00031672	1.2529	0.00064877	0.64126	0.00033204	517.7983064430339	58.411	0.90948	58.224	57.919	58.829	-0.18705					57	24	4	0	0	0	0.024539	1	6644	6644		14.865	0	1	5574000			64528	17328;8880	45447	45512	69789	69789					0.06534913620089355
QTLYSIRFFLN	11	Unmodified	_QTLYSIRFFLN_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.2621765136719	3	467.922355	1400.74524	0.047059	2.202E-05	-0.90297	-0.00042252	-0.85591	-0.0004005	467.92083688278336	50.591	0.69891	50.411	50.172	50.87	-0.18071					34	18	3	0	0	0	0.024834	1	5208	5208		12.957	7.5446	1	726950	+		64529	27181	45448	45513	69790	69790					0.060893060400530885
QTMECSLRV	9	Unmodified	_QTMECSLRV_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.271728515625	2	533.754627	1065.4947	-1.4125	-0.00075395	-2.7463	-0.0014658	-4.1588	-0.0022198	533.7544840665785	55.327	0.37648	55.425	55.294	55.671	0.098015					21	9	4	0	0	0	0.024319	1	6022	6022		39.253	14.734	1	114420			64530	1361	45449	45514	69791	69791					-0.035427375485824086
QTMKNLEPL	9	Unmodified	_QTMKNLEPL_					0	0	0			REV__ENSG00000053900|ENST00000315368|ANAPC4	REV__ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7981567382812	2	537.286617	1072.55868	-0.5163	-0.0002774	-2.3006	-0.0012361	-2.8169	-0.0015135	537.2856005096473	66.05	0.7577	65.778	65.464	66.221	-0.27282					52	19	4	0	0	0	0.023417	1	7859	7859		58.782	0	1	3689200	+		64531	20183	45450	45515	69792	69792					0.025303658800112316
QTMNCEWT	8	Unmodified	_QTMNCEWT_					0	0	0		RRP1|p.R105C|1|0.2|ENSG00000160214|chr21:43793357-43793357|C/T|missense_variant	RRP1|p.R105C|1|0.2|ENSG00000160214|chr21:43793357-43793357|C/T|missense_variant	RRP1|p.R105C|1|0.2|ENSG00000160214|chr21:43793357-43793357|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.33135986328125	2	506.696777	1011.379	-1.4253	-0.00072221	0.26236	0.00013294	-1.163	-0.00058927	506.6969808467709	37.806	0.30315	37.806	37.632	37.936	0					13	8	2	0	0	0	0.027866	1	3090	3090		30.504	0	1	140350			64532	37846	45451	45516	69793	69793					-0.12623261399437524
QTMQIITQF	9	Unmodified	_QTMQIITQF_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2273559570312	2	555.286617	1108.55868	0.24536	0.00013624	-3.2791	-0.0018209	-3.0338	-0.0016846	555.2847398275113	80.268	0.41434	80.061	79.843	80.257	-0.20632					24	9	3	0	0	0	0.024257	1	9648	9648		58.23	0	1	186650	+		64533	20748	45452	45517	69794	69794					0.00874365880008554
QTMQIITQF	9	Unmodified	_QTMQIITQF_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.286617	1108.55868	-0.27747	-0.00015407	-2.333	-0.0012955	-2.6105	-0.0014496	555.2848514816947	80.168	0.67121	80.168	79.786	80.457	0	0.038185	9.3029E-05	NaN	58.23	48	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604350	+		64534	20748	45452	45517							0.00874365880008554
QTMQIITQF	9	Unmodified	_QTMQIITQF_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.286617	1108.55868	-1.2682	-0.0007042	-1.2002	-0.00066648	-2.4684	-0.0013707	555.2853349518444	80.353	0.83736	80.201	79.843	80.68	-0.15169	0.070976	0.001351	NaN	58.23	67	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701320	+		64535	20748	45452	45517							0.00874365880008554
QTMQIITQF	9	Unmodified	_QTMQIITQF_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.286617	1108.55868	-0.49823	-0.00027666	-1.9787	-0.0010987	-2.4769	-0.0013754	555.2849492166507	80.173	1.051	80.194	79.603	80.654	0.021439	0.064089	0.00048654	NaN	58.23	65	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726560	+		64536	20748	45452	45517							0.00874365880008554
QTMQIITQF	9	Unmodified	_QTMQIITQF_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	555.286617	1108.55868	0.17908	9.944E-05	-3.4488	-0.0019151	-3.2697	-0.0018156	555.2846371834358	80.354	0.37482	80.116	79.831	80.206	-0.23784	-0.013791	-0.0011461	NaN	58.23	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141130	+		64537	20748	45452	45517							0.00874365880008554
QTMSKKYPF	9	Unmodified	_QTMSKKYPF_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.3424072265625	2	565.289159	1128.56377	-0.47961	-0.00027112	-3.9572	-0.002237	-4.4368	-0.0025081	565.2868890412543	45.938	0.45104	45.938	45.748	46.199	0					21	12	2	0	0	0	0.024381	1	4551	4551		21.96	0	1	341160			64538	10602	45453	45518	69795	69795					0.004626697426374449
QTNAVPAKV	9	Unmodified	_QTNAVPAKV_					0	0	0		ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4;nc|ENSG00000154655|Q8NA19-2|L3MBTL4	ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19-2|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.8102722167969	2	464.266542	926.51853	-0.18431	-8.5568E-05	0.81461	0.0003782	0.6303	0.00029263	464.2666057596093	39.529	0.99018	39.553	39.099	40.089	0.023727					56	27	3	0	0	0	0.023274	1	3278	3278		49.536	0.094497	1	493680			64539	6425;18396	45454	45519	69796	69796					0.052331872717559236
QTNAVPAKV	9	Unmodified	_QTNAVPAKV_					0	0	0		ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4;nc|ENSG00000154655|Q8NA19-2|L3MBTL4	ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19-2|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.266542	926.51853	-0.050304	-2.3355E-05	0.54362	0.00025238	0.49331	0.00022903	464.26633521101445	39.382	1.0601	39.382	39.076	40.137	0	-0.040885	-0.00044357	NaN	49.536	47	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620610			64540	6425;18396	45454	45519							0.052331872717559236
QTNAVPAKV	9	Unmodified	_QTNAVPAKV_					0	0	0		ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4;nc|ENSG00000154655|Q8NA19-2|L3MBTL4	ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19-2|L3MBTL4	nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	464.266542	926.51853	-0.81289	-0.0003774	1.2928	0.00060019	0.47988	0.00022279	464.26691008986495	39.433	0.70731	39.334	38.983	39.69	-0.098751	-0.08871	0.00025203	NaN	49.536	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531570			64541	6425;18396	45454	45519							0.052331872717559236
QTNGKVIL	8	Unmodified	_QTNGKVIL_					0	0	0		nc|ENSG00000112701|Q9GZR1-2|SENP6;SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant;ENSG00000112701|ENST00000447266|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7747802734375	2	436.763635	871.512717	-0.41099	-0.00017951	-4.322	-0.0018877	-4.733	-0.0020672	436.76213491890115	90.051	0.56586	90.051	89.731	90.297	0					22	13	3	0	0	0	0.027866	1	11339	11339		19.104	0	1	143770			64542	18180	45455	45520	69797	69797					0.071820887600893
QTNGQLEKI	9	Unmodified	_QTNGQLEKI_					0	0	0			REV__ENST00000534639.1_1_11:43284362-43284860:-|nuORF	REV__ENST00000534639.1_1_11:43284362-43284860:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.27099609375	2	515.780013	1029.54547	-0.27155	-0.00014006	-1.1558	-0.00059612	-1.4273	-0.00073618	515.7796270643802	48.886	0.36198	48.704	48.521	48.883	-0.18206					11	9	2	0	0	0	0.024527	1	4901	4901		31.53	6.0796	1	145940	+		64543	34645	45456	45521	69798	69798					0.03188251092274186
QTNRILVE	8	Unmodified	_QTNRILVE_					0	0	0			REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7725830078125	2	486.777274	971.539994	0.17247	8.3953E-05	1.5011	0.00073071	1.6736	0.00081467	486.7776868760171	85.819	1.1622	85.624	85.258	86.42	-0.19508					33	26	2	0	0	0	0.027866	1	10378	10378		32.812	4.9302	1	121080	+		64544	19819	45457	45522	69799	69799					0.053085723004642205
QTNRILVE	8	Unmodified	_QTNRILVE_					0	0	0			REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7724304199219	2	486.777274	971.539994	0.59831	0.00029124	1.5415	0.00075035	2.1398	0.0010416	486.77758691542437	85.766	0.67842	85.629	85.284	85.962	-0.13753					24	15	2	0	0	0	0.027866	1	10366	10366		37.812	0	1	98845	+		64545	19819	45457	45522	69800	69800					0.053085723004642205
QTNVCKVL	8	Unmodified	_QTNVCKVL_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.7689514160156	2	452.74967	903.484787	-0.31356	-0.00014197	-2.3905	-0.0010823	-2.7041	-0.0012243	452.74826734777037	27.239	0.4206	27.082	26.887	27.307	-0.15664					16	9	2	0	0	0	0.027866	1	1485	1485		57.811	6.4758	1	77549	+		64546	23651	45458	45523	69801	69801					0.02918442508348562
QTNVPNLVN	9	Unmodified	_QTNVPNLVN_					0	0	0		nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF;ENST00000565119.1_1_16:53279647-53284265:+|nuORF	nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2926330566406	2	499.766906	997.519259	-0.80213	-0.00040088	1.0457	0.00052259	0.24354	0.00012172	500.26888711012896	47.426	0.44627	47.485	47.354	47.8	0.059097					21	13	2	0	0	0	0.024288	1	4687	4687		44.377	7.2181	1	413040			64547	18544	45459	45524	69802	69802					0.020399819208023473
QTPAQQLLV	9	Unmodified	_QTPAQQLLV_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2918395996094	2	499.287474	996.560395	-0.3746	-0.00018703	-0.52387	-0.00026156	-0.89846	-0.00044859	499.28686211738557	47.869	0.44782	47.716	47.476	47.924	-0.15301					31	13	3	0	0	0	0.024466	1	4787	4787		39.253	1.4413	1	957340			64548	127;9786	45460	45525	69803	69803					0.06197742960284813
QTPATRQGW	9	Unmodified	_QTPATRQGW_					0	0	0			REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	REV__sp|P03181|BHLF1_EBVB9UncharacterizedproteinBHLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BHLF1PE=4SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3031616210938	2	522.764697	1043.51484	-0.034812	-1.8199E-05	-2.1068	-0.0011014	-2.1416	-0.0011196	522.7632668537259	29.681	0.46378	29.531	29.459	29.923	-0.14952					15	10	3	0	0	0	0.024427	1	1867	1867		34.173	0	1	63477	+		64549	37526	45461	45526	69804	69804					-0.005174825020958451
QTPCLILL	8	Unmodified	_QTPCLILL_					0	0	0		SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|35|3|sense	SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|35|3|sense	SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|35|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.27447509765625	2	450.764789	899.515025	0.11246	5.0694E-05	-2.4449	-0.0011021	-2.3325	-0.0010514	450.7639948999598	92.377	0.61507	92.236	91.922	92.537	-0.14131					20	14	2	0	0	0	0.027866	1	11377	11377		7.6903	0	1	228770			64550	38006	45462	45527	69805	69805					0.06124801173552896
QTPEIPIDI	9	Unmodified	_QTPEIPIDI_					0	0	0		nc|ENSG00000073803|O43283-4|MAP3K13;nc|ENSG00000073803|O43283-5|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	nc|ENSG00000073803|O43283-4|MAP3K13	nc|ENSG00000073803|O43283-4|MAP3K13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.8104248046875	2	513.279315	1024.54408	-1.1449	-0.00058766	0.29205	0.00014991	-0.85287	-0.00043776	513.2776209161821	37.983	0.2065	37.901	37.777	37.984	-0.082516					7	5	2	0	0	0	0.024209	1	3130	3130		47.657	19.403	1	92204			64551	18079	45463	45528	69806	69806					0.032786170035251416
QTPEKTEIKDI	11	Unmodified	_QTPEKTEIKDI_					0	0	0			REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF	REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	3	434.569759	1300.68745	-0.15356	-6.673E-05	0.95404	0.00041459	0.80048	0.00034786	434.5700191058307	46.604	0.33614	46.41	46.273	46.609	-0.19387					17	9	3	0	0	0	0.024702	1	4500	4500		35.496	12.118	1	184020	+		64552	31092	45464	45529	69807	69807					0.049129993239375835
QTPEKTEIKDI	11	Unmodified	_QTPEKTEIKDI_					0	0	0			REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF	REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	434.569759	1300.68745	0.15583	6.7719E-05	0.91727	0.00039862	1.0731	0.00046634	434.5701630164645	46.475	0.21485	46.378	46.223	46.438	-0.096649	-0.068961	0.00022354	NaN	35.496	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133030	+		64553	31092	45464	45529							0.049129993239375835
QTPEKTEIKDI	11	Unmodified	_QTPEKTEIKDI_					0	0	0			REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF	REV__ENST00000369494.5_1_1:116925078-116925195:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	434.569759	1300.68745	0.065706	2.8554E-05	0.4333	0.0001883	0.499	0.00021685	434.56993809183405	46.823	0.28313	46.554	46.379	46.662	-0.26939	0.10656	-0.00040742	NaN	35.496	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144660	+		64554	31092	45464	45529							0.049129993239375835
QTPFNPRR	8	Unmodified	_QTPFNPRR_					0	0	0		ENSG00000166527|ENST00000299665|CLEC4D	ENSG00000166527|ENST00000299665|CLEC4D	ENSG00000166527|ENST00000299665|CLEC4D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7724609375	2	508.275232	1014.53591	0.37679	0.00019151	-2.179	-0.0011075	-1.8022	-0.00091603	508.2740146682817	33.37	0.5485	33.427	33.105	33.654	0.056572					20	14	2	0	0	0	0.027866	1	2383	2383		60.972	6.1956	1	159440			64555	7577	45465	45530	69808	69808					0.029225275974113174
QTPKVIGL	8	Unmodified	_QTPKVIGL_					0	0	0			REV__ENST00000445586.1_1_X:48365300-48367200:-|nuORF	REV__ENST00000445586.1_1_X:48365300-48367200:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2560729980469	2	428.268553	854.522553	0.0047739	2.0445E-06	-2.4627	-0.0010547	-2.4579	-0.0010526	428.2673642873601	44.522	0.33936	44.559	44.375	44.715	0.0369					14	9	2	0	0	0	0.027866	1	4183	4183		31.955	0	1	153150	+		64556	32616	45466	45531	69809	69809					0.0894727676545699
QTPLLVRQP	9	Unmodified	_QTPLLVRQP_					0	0	0			REV__ENSG00000135521|ENST00000367576|LTV1	REV__ENSG00000135521|ENST00000367576|LTV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.2727661132812	2	526.316566	1050.61858	0.36649	0.00019289	-0.45238	-0.0002381	-0.085897	-4.5209E-05	526.3161276902119	58.355	0.70036	58.446	58.118	58.819	0.091217					35	18	3	0	0	0	0.024477	1	6570	6570		20.947	0	1	381180	+		64557	23553	45467	45532	69810	69810					0.09529424605557324
QTPNVVPDP	9	Unmodified	_QTPNVVPDP_					0	0	0			REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;REV__nc|ENSG00000114805|Q4KWH8|PLCH1	REV__nc|ENSG00000114805|Q4KWH8|PLCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7481994628906	2	483.748182	965.481811	0.14888	7.2023E-05	0.41087	0.00019876	0.55976	0.00027078	483.7483797828883	68.854	1.0611	68.561	68.251	69.312	-0.29266					70	27	4	0	0	0	0.54416	1	8229	8229		56.434	9.6674	1	4096100	+		64558	22146;36582	45468	45533	69811	69811					-0.002311093448156498
QTPPRQPVRV	10	Unmodified	_QTPPRQPVRV_					0	0	0			REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF	REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.343646	1176.67274	-0.33817	-0.0001993	-1.0615	-0.00062561	-1.3997	-0.0008249	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0992	1	11068	11068		32.812	2.4947	1	6196800	+		64559	32298	45469	45534	69812	69812					0.09147016757128767
QTPQPVAVAM	10	Unmodified	_QTPQPVAVAM_					0	0	0			REV__ENST00000442747.5_1_3:48541940-48541985:-|nuORF	REV__ENST00000442747.5_1_3:48541940-48541985:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.29052734375	2	521.273509	1040.53247	-0.43901	-0.00022885	0.50946	0.00026557	0.07045	3.6724E-05	521.2737752598415	66.167	0.39983	65.926	65.748	66.148	-0.24145					11	9	2	0	0	0	0.03519	1	7558	7558		17.468	0	1	127470	+		64560	32570	45470	45535	69813	69813					0.013820967085393931
QTPQPVAVAM	10	Unmodified	_QTPQPVAVAM_					0	0	0			REV__ENST00000442747.5_1_3:48541940-48541985:-|nuORF	REV__ENST00000442747.5_1_3:48541940-48541985:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.292236328125	2	521.273509	1040.53247	-0.30622	-0.00015962	0.73568	0.00038349	0.42946	0.00022387	521.2738040969195	66.128	0.27977	65.877	65.726	66.006	-0.25112					9	6	2	0	0	0	0.03519	1	7555	7555		30.318	0	1	80235	+		64561	32570	45470	45535	69814	69814					0.013820967085393931
QTPQVEITP	9	Unmodified	_QTPQVEITP_					0	0	0		sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2972106933594	2	506.769114	1011.52368	0.029608	1.5005E-05	-3.4924	-0.0017699	-3.4628	-0.0017549	506.76604600111745	58.149	0.95097	58.149	57.872	58.823	0					58	25	3	0	0	0	0.024466	1	6621	6621		24.519	0	1	695700			64562	37926	45471	45536	69815	69815					0.018374463436998667
QTPQVEITP	9	Unmodified	_QTPQVEITP_					0	0	0		sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2967224121094	2	506.769114	1011.52368	-0.69574	-0.00035258	-4.4289	-0.0022444	-5.1246	-0.002597	506.76631904266014	58.417	0.69227	58.23	57.955	58.648	-0.18705					39	18	3	0	0	0	0.024367	1	6619	6619		36.447	9.6506	1	655240			64563	37926	45471	45536	69816	69816					0.018374463436998667
QTPQVEITP	9	Unmodified	_QTPQVEITP_					0	0	0		sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.769114	1011.52368	-0.035295	-1.7886E-05	-5.7065	-0.0028919	-5.7418	-0.0029098	506.7661037169257	58.416	0.89746	58.238	57.932	58.829	-0.17775	0.051157	-0.00026248	NaN	29.17	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	960850			64564	37926	45471	45536							0.018374463436998667
QTPQVEITP	9	Unmodified	_QTPQVEITP_					0	0	0		sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.769114	1011.52368	-0.094625	-4.7953E-05	-5.6728	-0.0028748	-5.7674	-0.0029227	506.7662409895406	58.34	0.82841	58.15	57.913	58.742	-0.19017	-0.036983	-0.00022832	NaN	29.17	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	879290			64565	37926	45471	45536							0.018374463436998667
QTPQVEITP	9	Unmodified	_QTPQVEITP_					0	0	0		sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.769114	1011.52368	0.37143	0.00018823	-5.7986	-0.0029385	-5.4271	-0.0027503	506.76598719399925	58.511	0.81986	58.269	57.918	58.738	-0.24166	0.082202	-0.0003558	NaN	29.17	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1033600			64566	37926	45471	45536							0.018374463436998667
QTPREDWA	8	Unmodified	_QTPREDWA_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2697448730469	2	501.735606	1001.45666	-0.28097	-0.00014097	0.64666	0.00032445	0.36568	0.00018348	501.7356508243525	39.925	0.52737	39.776	39.513	40.04	-0.1497					32	13	3	0	0	0	0.027866	1	3398	3398		12.959	0	1	662160			64567	8152	45472	45537	69817	69817					-0.04401164147395775
QTQAQQKK	8	Unmodified	_QTQAQQKK_					0	0	0			REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	REV__nc|ENSG00000123572|Q7Z2Y5-2|NRK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2920837402344	2	480.267073	958.519593	-0.71079	-0.00034137	3.5764	0.0017176	2.8657	0.0013763	480.26876782400626	56.123	0.11009	55.908	55.851	55.961	-0.21551					4	2	2	0	0	0	0.027866	1	6051	6051		21.96	3.6355	1	189930	+		64568	22707	45473	45538	69818	69818					0.03867401640661683
QTQEEVVGY	9	Unmodified	_QTQEEVVGY_					0	0	0		ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.7655029296875	2	526.748379	1051.4822	0.069926	3.6833E-05	0.096408	5.0783E-05	0.16633	8.7616E-05	526.7482802498577	56.422	0.47069	56.206	55.92	56.39	-0.21607					29	11	3	0	0	0	0.02435	1	6102	6102		42.396	1.8235	1	1639800			64569	10694	45474	45539	69819	69819					-0.0414773441559646
QTQEEVVGY	9	Unmodified	_QTQEEVVGY_					0	0	0		ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.748379	1051.4822	-0.57876	-0.00030486	0.9694	0.00051063	0.39065	0.00020577	526.7487101063932	56.319	0.47922	56.162	55.894	56.373	-0.15655	-0.039545	0.00047148	NaN	26.693	39	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1719700			64570	10694	45474	45539							-0.0414773441559646
QTQEEVVGY	9	Unmodified	_QTQEEVVGY_					0	0	0		ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	ENSG00000230797|ENST00000429584|YY2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.748379	1051.4822	-0.02767	-1.4575E-05	-2.4345	-0.0012824	-2.4622	-0.001297	526.7461556324571	56.462	0.78525	56.237	55.915	56.7	-0.2248	0.035197	-0.0031145	NaN	26.693	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1495000			64571	10694	45474	45539							-0.0414773441559646
QTQGKIGNQVE	11	Unmodified	_QTQGKIGNQVE_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.88800048828125	3	401.210565	1200.60986	0.73061	0.00029313	-3.2764	-0.0013145	-2.5457	-0.0010214	401.20903463329546	23.283	0.49905	23.103	22.743	23.242	-0.17989					14	10	2	0	0	0	0.024742	1	859	859		20.315	8.3826	1	27591			64572	10124	45475	45540	69820	69820					0.01758406178396399
QTQIKKALL	9	Unmodified	_QTQIKKALL_					0	0	0			REV__NAALAD2|p.K91N|1|0.41|ENSG00000077616|chr11:90147408-90147408|G/T|missense_variant	REV__NAALAD2|p.K91N|1|0.41|ENSG00000077616|chr11:90147408-90147408|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8341674804688	2	521.834591	1041.65463	0.36136	0.00018857	-0.80413	-0.00041962	-0.44277	-0.00023105	521.8340958344138	69.57	1.0639	69.277	68.896	69.96	-0.29292					79	26	4	0	0	0	0.31037	1	8337	8337		74.255	0	1	4184400	+		64573	20595	45476	45541	69821	69821					0.13546881782394848
QTQIPDYAE	9	Unmodified	_QTQIPDYAE_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.3004150390625	2	532.748379	1063.4822	-0.49496	-0.00026369	3.8803	0.0020672	3.3853	0.0018035	533.251649457093	36.663	0.40458	36.447	36.205	36.61	-0.21661					14	9	2	0	0	0	0.024466	1	2892	2892		18.262	0	1	116580			64574	9914	45477	45542	69822	69822					-0.04699734415612511
QTQKPPWL	8	Unmodified	_QTQKPPWL_					0	0	0		ENST00000326237.3_1_3:10044409-10044886:+|nuORF	ENST00000326237.3_1_3:10044409-10044886:+|nuORF	ENST00000326237.3_1_3:10044409-10044886:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.2748107910156	2	499.276909	996.539266	0.05054	2.5234E-05	-4.3767	-0.0021852	-4.3261	-0.0021599	499.27467580145367	20.201	0.98216	19.978	19.631	20.613	-0.22344					46	19	4	0	0	0	0.78609	1	497	497		60.294	8.9585	1	721770			64575	12279	45478	45543	69823	69823					0.04085777651414446
QTQLKSLY	8	Unmodified	_QTQLKSLY_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.7693786621094	2	490.7742	979.533846	-0.57482	-0.00028211	0.72429	0.00035546	0.14947	7.3356E-05	490.7743523691286	41.795	0.92703	41.672	41.307	42.234	-0.12299					51	24	3	0	0	0	0.027866	1	3808	3808		34.173	0	1	1147300			64576	7709	45479	45544	69824	69824					0.04326054068928897
QTQLKSLY	8	Unmodified	_QTQLKSLY_					0	0	0		nc|ENSG00000167615|Q96PV6-1|LENG8;ENSG00000167615|ENST00000326764|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	nc|ENSG00000167615|Q96PV6-1|LENG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.76947021484375	2	490.7742	979.533846	0.081641	4.0067E-05	-0.4138	-0.00020308	-0.33216	-0.00016301	490.77390728526393	41.999	1.1706	41.768	41.235	42.406	-0.2303					56	31	3	0	0	0	0.027866	1	3819	3819		32.812	0	1	1044200			64577	7709	45479	45544	69825	69825					0.04326054068928897
QTQLWFYL	8	Unmodified	_QTQLWFYL_					0	0	0		ENST00000369729.7_1_10:105881840-105883475:+|nuORF	ENST00000369729.7_1_10:105881840-105883475:+|nuORF	ENST00000369729.7_1_10:105881840-105883475:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.7932739257812	2	549.784567	1097.55458	-0.51617	-0.00028378	-1.411	-0.00077576	-1.9272	-0.0010595	549.7837373300107	67.038	0.23831	66.815	66.742	66.981	-0.22374					8	5	2	0	0	0	0.027866	1	7732	7732		12.959	0	1	241510			64578	12934	45480	45545	69826	69826					0.009706444486027976
QTQPPPQV	8	Unmodified	_QTQPPPQV_					0	0	0		RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant;ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.76141357421875	2	447.737617	893.460681	-0.39491	-0.00017682	2.75	0.0012313	2.3551	0.0010545	447.7386465971591	32.734	0.41544	32.743	32.592	33.007	0.0089111					13	10	2	0	0	0	0.027866	1	2303	2303		11.511	0	1	108150			64579	6598	45481	45546	69827	69827					0.009689253463307068
QTQVTEKN	8	Unmodified	_QTQVTEKN_					0	0	0			REV__ZNF804A|p.D287N|1|0.22|ENSG00000170396|chr2:184936255-184936255|G/A|missense_variant	REV__ZNF804A|p.D287N|1|0.22|ENSG00000170396|chr2:184936255-184936255|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2837219238281	2	474.243264	946.471974	0.015006	7.1167E-06	3.9836	0.0018892	3.9986	0.0018963	474.2449175293778	53.7	0.71241	53.553	53.275	53.987	-0.14723					45	19	3	0	0	0	0.027866	1	5807	5807		23.042	12.777	1	1167800	+		64580	37823	45482	45547	69828	69828					-0.0034029735019203144
QTQVVLFLP	9	Unmodified	_QTQVVLFLP_					0	0	0		ENST00000570455.1_1_17:6538276-6538423:-|nuORF	ENST00000570455.1_1_17:6538276-6538423:-|nuORF	ENST00000570455.1_1_17:6538276-6538423:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2982788085938	2	522.808042	1043.60153	-0.5659	-0.00029586	1.6969	0.00088715	1.131	0.00059129	522.8083502172411	52.01	0.68904	51.863	51.406	52.095	-0.14735					25	19	2	0	0	0	0.024427	1	5545	5545		42.396	0	1	911910			64581	17031	45483	45548	69829	69829					0.08147503999748551
QTQWQRKLL	9	Unmodified	_QTQWQRKLL_					0	0	0		ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	600.8247680664062	2	600.846022	1199.67749	0.35247	0.00021178	-2.3845	-0.0014327	-2.032	-0.0012209	600.8442960597506	54.982	0.51041	54.776	54.502	55.013	-0.20613					38	13	4	0	0	0	0.0245	1	5854	5854		10.265	0	1	794710			64582	8915	45484	45549	69830	69830					0.08563900899889632
QTRAFPSLP	9	Unmodified	_QTRAFPSLP_					0	0	0		ENST00000467721.5_1_13:51102150-51102324:+|nuORF	ENST00000467721.5_1_13:51102150-51102324:+|nuORF	ENST00000467721.5_1_13:51102150-51102324:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7686767578125	2	508.779816	1015.54508	-0.32967	-0.00016773	3.4034	0.0017316	3.0738	0.0015639	508.7815328400206	42.081	0.7612	41.949	41.455	42.216	-0.13219					42	21	3	0	0	0	0.024292	1	3849	3849		40.778	5.1599	1	1818400			64583	14852	45485	45550	69831	69831					0.03792876163083747
QTRALFEKV	9	Unmodified	_QTRALFEKV_					0	0	0		ENST00000529899.1_1_8:144698125-144699659:-|nuORF;ENST00000531006.1_1_8:144698125-144698617:-|nuORF;ENST00000532308.5_1_8:144696774-144699659:-|nuORF;ENST00000531473.5_1_8:144696774-144698909:-|nuORF;ENSG00000104522|ENST00000425753|GFUS	ENST00000529899.1_1_8:144698125-144699659:-|nuORF	ENST00000529899.1_1_8:144698125-144699659:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3038940429688	2	546.314023	1090.61349	-0.25263	-0.00013802	-0.5264	-0.00028758	-0.77904	-0.0004256	546.8152026350521	37.183	0.29475	37.12	36.904	37.198	-0.063389					10	7	2	0	0	0	0.024506	1	2972	2972		30.504	11.144	1	40596			64584	2578	45486	45551	69832	69832					0.07181120742939129
QTREEKVLEL	10	Unmodified	_QTREEKVLEL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2137145996094	3	415.566348	1243.67722	-0.47036	-0.00019546	0.53627	0.00022286	0.065913	2.7391E-05	415.5670896748204	29.111	0.20159	29.111	28.947	29.149	0					6	4	2	0	0	0	0.03519	1	1753	1753		24.232	8.8943	1	19558			64585	9292	45487	45552	69833	69833					0.06512436389380127
QTREGKGW	8	Unmodified	_QTREGKGW_					0	0	0			REV__ENST00000332303.5_2_15:29560805-29560991:-|nuORF	REV__ENST00000332303.5_2_15:29560805-29560991:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.7327575683594	2	481.246141	960.477728	-0.32066	-0.00015432	3.9755	0.0019132	3.6548	0.0017589	481.24610751426934	56.993	0.64591	57.088	56.783	57.429	0.095306					37	17	3	0	0	0	0.027866	1	6310	6310		32.812	0	1	330010	+		64586	30489	45488	45553	69834	69834					-0.0040915404786119325
QTRGGRTP	8	Unmodified	_QTRGGRTP_					0	0	0			REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2738342285156	2	436.738483	871.462413	-0.1129	-4.9309E-05	-3.2154	-0.0014043	-3.3283	-0.0014536	436.73660928842975	52.786	0.33864	52.786	52.673	53.011	0					14	8	2	0	0	0	0.027866	1	5704	5704		30.504	0	1	61405	+		64587	31868	45489	45554	69835	69835					0.021539791549344045
QTRKQPTV	8	Unmodified	_QTRKQPTV_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-5|WWC2	REV__nc|ENSG00000151718|Q6AWC2-5|WWC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7350769042969	2	479.277441	956.540328	0.45287	0.00021705	4.2954	0.0020587	4.7483	0.0022757	479.2793452328716	58.812	1.0979	58.898	58.481	59.579	0.086258					87	29	4	0	0	0	0.027866	1	6708	6708		40.778	0	1	6738700	+		64588	24790	45490	45555	69836	69836					0.060319920203255606
QTRQAPKR	8	Unmodified	_QTRQAPKR_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7952880859375	2	492.788507	983.562461	-0.42532	-0.00020959	3.5887	0.0017685	3.1634	0.0015589	492.7901594813079	48.843	0.64261	48.69	48.433	49.076	-0.15277					24	17	2	0	0	0	0.027866	1	4954	4954		23.042	0	1	457470			64589	5315	45491	45556	69837	69837					0.07002216488740487
QTRQFKLTS	9	Unmodified	_QTRQFKLTS_					0	0	0			REV__nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1	REV__nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.3297119140625	2	554.809105	1107.60366	-0.14284	-7.9251E-05	-0.41103	-0.00022805	-0.55388	-0.0003073	554.8084179626151	32.524	0.2477	32.287	32.13	32.378	-0.23666					8	5	2	0	0	0	0.0245	1	2245	2245		16.717	0	1	55851	+		64590	37099	45492	45557	69838	69838					0.0541593273756007
QTRQLLRRY	9	Unmodified	_QTRQLLRRY_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.56304931640625	3	411.910672	1232.71019	-0.11288	-4.6497E-05	-1.4017	-0.00057739	-1.5146	-0.00062389	411.9090301837311	32.622	0.20135	32.464	32.363	32.564	-0.15772					8	4	3	0	0	0	0.024541	1	2253	2253		8.6937	2.3728	1	78403	+		64591	21220	45493	45558	69839	69839					0.10314108022771507
QTRQSRVL	8	Unmodified	_QTRQSRVL_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3085632324219	2	494.28834	986.562127	0.038791	1.9174E-05	3.2591	0.0016109	3.2979	0.0016301	494.2897662073161	79.056	0.46021	79.056	78.741	79.201	0					16	10	2	0	0	0	0.027866	1	9815	9815		29.15	8.6677	1	122800	+		64592	19864	45494	45559	69840	69840					0.06830796768906566
QTRQSRVL	8	Unmodified	_QTRQSRVL_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.28834	986.562127	-0.047995	-2.3723E-05	3.8893	0.0019224	3.8413	0.0018987	494.29012725363964	78.972	0.41489	78.991	78.777	79.192	0.018677	-0.032771	0.00026092	NaN	15.642	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91320	+		64593	19864	45494	45559							0.06830796768906566
QTRQTSKTW	9	Unmodified	_QTRQTSKTW_					0	0	0		ENST00000567224.1_1_15:53809927-53815498:-|nuORF	ENST00000567224.1_1_15:53809927-53815498:-|nuORF	ENST00000567224.1_1_15:53809927-53815498:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.2962646484375	2	568.296362	1134.57817	0.33698	0.00019151	-0.97145	-0.00055207	-0.63447	-0.00036057	568.295847269424	21.315	1.2444	21.138	20.774	22.019	-0.17721					70	25	4	0	0	0	0.077175	4	652	641;652;664;677		118.74	39.292	1	4798000			64594	16957	45495	45560	69841;69842;69843;69844	69842					0.016264582151279683
QTRQTSKTW	9	Unmodified	_QTRQTSKTW_					0	0	0		ENST00000567224.1_1_15:53809927-53815498:-|nuORF	ENST00000567224.1_1_15:53809927-53815498:-|nuORF	ENST00000567224.1_1_15:53809927-53815498:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.2962646484375	2	568.296362	1134.57817	0.15115	8.5898E-05	-0.77078	-0.00043803	-0.61963	-0.00035213	568.2959621002274	21.49	1.2101	21.299	20.784	21.994	-0.19072					66	24	4	0	0	0	0.14181	4	675	653;663;675;688		101.25	23.941	1	3829600			64595	16957	45495	45560	69845;69846;69847;69848	69847					0.016264582151279683
QTRQTSKTW	9	Unmodified	_QTRQTSKTW_					0	0	0		ENST00000567224.1_1_15:53809927-53815498:-|nuORF	ENST00000567224.1_1_15:53809927-53815498:-|nuORF	ENST00000567224.1_1_15:53809927-53815498:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	568.296362	1134.57817	-1.3518	-0.00076822	1.1543	0.00065597	-0.19752	-0.00011225	568.2968080866045	21.454	0.92849	21.241	20.773	21.701	-0.2128	0.014904	0.0023131	NaN	118.74	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56731			64596	16957	45495	45560							0.016264582151279683
QTRRAVTTL	9	Unmodified	_QTRRAVTTL_					0	0	0		nc|ENSG00000185838|Q9BYB4-2|GNB1L;ENSG00000185838|ENST00000329517|GNB1L	nc|ENSG00000185838|Q9BYB4-2|GNB1L	nc|ENSG00000185838|Q9BYB4-2|GNB1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.3261108398438	2	523.309272	1044.60399	-0.12389	-6.4832E-05	2.4414	0.0012776	2.3175	0.0012128	523.3103133882006	80.917	0.64547	80.679	80.409	81.055	-0.23783					20	15	2	0	0	0	0.024477	1	9713	9713		20.947	0	1	72620			64597	9481	45496	45561	69849	69849					0.08347352457417401
QTRRKRAA	8	Unmodified	_QTRRKRAA_					0	0	0			REV__ENSG00000164902|ENST00000297540|PHAX	REV__ENSG00000164902|ENST00000297540|PHAX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7503967285156	2	493.801949	985.589344	-0.22981	-0.00011348	-3.9321	-0.0019417	-4.162	-0.0020552	493.7998091701308	45.294	0.67928	45.338	45.002	45.681	0.043877					43	19	3	0	0	0	0.027866	1	4367	4367		27.882	15.675	1	2520100	+		64598	25816	45497	45562	69850	69850					0.09597325099923637
QTRRLLLL	8	Unmodified	_QTRRLLLL_					0	0	0			REV__ENSG00000255181|ENST00000542437|CCDC166	REV__ENSG00000255181|ENST00000542437|CCDC166	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.25390625	2	506.834926	1011.6553	0.13371	6.777E-05	-0.19803	-0.00010037	-0.06432	-3.26E-05	506.8346186820609	56.647	0.73434	56.422	56.189	56.923	-0.2248					39	18	3	0	0	0	0.027866	1	6108	6108		13.775	0	1	554960	+		64599	29063	45498	45563	69851	69851					0.14993721222128897
QTRRNVKV	8	Unmodified	_QTRRNVKV_					0	0	0			REV__ENST00000573841.5_1_17:80693623-80699341:+|nuORF	REV__ENST00000573841.5_1_17:80693623-80699341:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2922668457031	2	500.804157	999.593761	0.7459	0.00037355	1.2271	0.00061454	1.973	0.00098809	500.8048270008952	55.72	0.91837	55.72	55.116	56.035	0					71	25	4	0	0	0	0.027866	1	6211	6211		44.117	4.864	1	1835600	+		64600	26134	45499	45564	69852	69852					0.09394789522843894
QTRRQCPT	8	Unmodified	_QTRRQCPT_					0	0	0			REV__ENST00000506485.1_1_5:114937968-114938790:+|nuORF	REV__ENST00000506485.1_1_5:114937968-114938790:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.28924560546875	2	495.2509	988.487247	0.78748	0.00039	1.4783	0.00073214	2.2658	0.0011221	495.251463190897	58.444	1.6548	58.444	58.056	59.711	0					71	44	3	0	0	0	0.027866	1	6634	6634		49.442	13.823	1	556300	+		64601	34028	45500	45565	69853	69853					-0.007457090339926253
QTRRRRRLRRR	11	Unmodified	_QTRRRRRLRRR_					0	0	0		ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	ENSG00000135144|ENST00000548759|DTX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.24530029296875	4	403.25972	1609.00977	1.831	0.00073838	0.55701	0.00022462	2.3881	0.00096301	403.51038406691885	31.951	0.43866	32.02	31.845	32.284	0.06896					17	10	2	0	0	0	0.024901	1	2136	2136		3.6191	3.2786	1	117120			64602	4865	45501	45566	69854	69854					0.22962838147645925
QTRSDFLLD	9	Unmodified	_QTRSDFLLD_					0	0	0		nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.31005859375	2	547.77747	1093.54039	-0.70212	-0.00038461	-1.7466	-0.00095675	-2.4487	-0.0013414	547.7764300461804	67.417	0.79179	67.179	66.838	67.629	-0.23814					28	18	2	0	0	0	0.024511	1	7817	7817		19.104	0	1	631300			64603	5490	45502	45567	69855	69855					-0.0026405277033063612
QTRSPGETF	9	Unmodified	_QTRSPGETF_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.7488708496094	2	511.748713	1021.48287	0.14505	7.4229E-05	-0.34531	-0.00017671	-0.20026	-0.00010248	511.74833817259923	32.183	0.68925	31.991	31.728	32.417	-0.19261					39	15	3	0	0	0	0.39228	1	2202	2202		66.429	3.123	1	421370			64604	5909	45503	45568	69856	69856					-0.02700894975907886
QTRSPGETF	9	Unmodified	_QTRSPGETF_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.748713	1021.48287	0.018046	9.2348E-06	-0.29956	-0.0001533	-0.28151	-0.00014406	511.748381234953	32.174	0.56094	31.937	31.697	32.258	-0.23667	-0.029795	-0.00018032	NaN	66.429	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468670			64605	5909	45503	45568							-0.02700894975907886
QTRTKLKP	8	Unmodified	_QTRTKLKP_					0	0	0			REV__ENST00000282999.7_1_5:112200406-112203231:+|nuORF	REV__ENST00000282999.7_1_5:112200406-112203231:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2874755859375	2	486.303458	970.592364	-0.63053	-0.00030663	0.51907	0.00025243	-0.11146	-5.4203E-05	486.3036203346783	38.815	1.1303	38.594	38.334	39.464	-0.22149					48	29	3	0	0	0	0.027866	1	3197	3197		16.473	8.7829	1	827070	+		64606	24878	45504	45569	69857	69857					0.10589155434070108
QTRTKLKP	8	Unmodified	_QTRTKLKP_					0	0	0			REV__ENST00000282999.7_1_5:112200406-112203231:+|nuORF	REV__ENST00000282999.7_1_5:112200406-112203231:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2868957519531	2	486.303458	970.592364	0.15061	7.3242E-05	-0.26852	-0.00013058	-0.11791	-5.7339E-05	486.3032406066785	38.784	1.1517	38.558	38.32	39.472	-0.2257					48	30	3	0	0	0	0.027866	1	3195	3195		20.947	0.95016	1	736690	+		64607	24878	45504	45569	69858	69858					0.10589155434070108
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.7834167480469	2	511.785099	1021.55564	-0.44168	-0.00022605	0.37595	0.0001924	-0.065733	-3.3641E-05	511.7851655920992	53.225	1.0074	53.225	52.864	53.872	0					55	27	4	0	0	0	0.22902	1	5747	5747		85.161	5.4482	1	2396800			64608	2245;16692	45505	45570	69859	69859					0.04572858817505221
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.7829895019531	2	511.785099	1021.55564	-0.80946	-0.00041427	0.65942	0.00033748	-0.15003	-7.6785E-05	511.7853156655659	53.295	0.73021	53.148	52.835	53.566	-0.14723					42	19	3	0	0	0	0.22902	1	5735	5735		85.161	8.3142	1	2245400			64609	2245;16692	45505	45570	69860	69860					0.04572858817505221
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.785099	1021.55564	-0.52384	-0.00026809	-0.012945	-6.6252E-06	-0.53679	-0.00027472	511.7851972601914	53.024	0.80482	53.12	52.714	53.518	0.095669	-0.015569	-0.00048684	NaN	85.161	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2094800			64610	2245;16692	45505	45570							0.04572858817505221
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.785099	1021.55564	0.049282	2.5222E-05	-0.44526	-0.00022788	-0.39598	-0.00020266	511.78449244266636	53.379	0.37343	53.12	52.961	53.335	-0.25838	-0.014922	-0.00092935	NaN	85.161	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139050			64611	2245;16692	45505	45570							0.04572858817505221
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.785099	1021.55564	-0.096272	-4.927E-05	-1.5898	-0.00081365	-1.6861	-0.00086292	511.7836639949735	53.253	0.52945	53.064	52.754	53.283	-0.18981	-0.071537	-0.0021009	NaN	85.161	14	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143890			64612	2245;16692	45505	45570							0.04572858817505221
QTSAWLPPT	9	Unmodified	_QTSAWLPPT_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.80584716796875	2	500.758549	999.502546	0.36488	0.00018272	-2.9244	-0.0014644	-2.5595	-0.0012817	500.75673779298404	42.089	0.36859	42.089	41.987	42.355	0					16	10	2	0	0	0	0.023454	1	3867	3867		44.377	4.319	1	201910			64613	10501	45506	45571	69861	69861					0.002774810348455503
QTSDLQRW	8	Unmodified	_QTSDLQRW_					0	0	0			REV__ENSG00000154957|ENST00000580306|ZNF18	REV__ENSG00000154957|ENST00000580306|ZNF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2568969726562	2	517.256705	1032.49886	-0.71555	-0.00037012	0.7815	0.00040424	0.065956	3.4116E-05	517.2571261216964	25.357	0.92951	25.13	24.842	25.771	-0.22683					45	21	3	0	0	0	0.34573	1	1189	1189		104.75	3.1458	1	2903000	+		64614	24984	45507	45572	69862	69862					-0.016091887390302873
QTSDLQRW	8	Unmodified	_QTSDLQRW_					0	0	0			REV__ENSG00000154957|ENST00000580306|ZNF18	REV__ENSG00000154957|ENST00000580306|ZNF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	517.256705	1032.49886	-0.064986	-3.3614E-05	0.11623	6.0123E-05	0.051249	2.6509E-05	517.2567392598296	25.188	0.97452	25.017	24.647	25.621	-0.17078					54	22	4	0	0	0	0.28835	1	1153	1153		116.9	9.8961	1	2278200	+		64615	24984	45507	45572	69863	69863					-0.016091887390302873
QTSDLQRW	8	Unmodified	_QTSDLQRW_					0	0	0			REV__ENSG00000154957|ENST00000580306|ZNF18	REV__ENSG00000154957|ENST00000580306|ZNF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2568359375	2	517.256705	1032.49886	0.86867	0.00044933	-0.92271	-0.00047728	-0.054034	-2.795E-05	517.2563160611948	25.164	0.84724	24.993	24.732	25.579	-0.17151					46	19	4	0	0	0	0.25873	1	1132	1132		129.68	3.8686	1	2679900	+		64616	24984	45507	45572	69864	69864					-0.016091887390302873
QTSGEPPEP	9	Unmodified	_QTSGEPPEP_					0	0	0		nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;ENST00000451868.2_1_12:123484929-123519149:-|nuORF	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7820739746094	2	471.214172	940.413791	-0.18466	-8.7015E-05	1.8931	0.00089206	1.7085	0.00080505	471.2147263167878	29.515	0.31751	29.518	29.314	29.631	0.0031357					11	7	2	0	0	0	0.024427	1	1797	1797		19.997	0	1	39579			64617	18110	45508	45573	69865	69865					-0.058799789954832704
QTSKAKDREVF	11	Unmodified	_QTSKAKDREVF_					0	0	0		ENST00000419640.1_1_2:192108745-192110761:-|nuORF	ENST00000419640.1_1_2:192108745-192110761:-|nuORF	ENST00000419640.1_1_2:192108745-192110761:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7637939453125	3	436.901731	1307.68336	-0.37872	-0.00016546	-3.7184	-0.0016246	-4.0971	-0.00179	437.2342590311141	27.011	0.41948	26.843	26.594	27.013	-0.16816					11	9	2	0	0	0	0.02478	1	1433	1433		53.597	2.0691	1	63039			64618	13956	45509	45574	69866	69866					0.04182954620864621
QTSKHLLKP	9	Unmodified	_QTSKHLLKP_					0	0	0		ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;nc|ENSG00000135439|Q99490-2|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.267822265625	2	526.316566	1050.61858	-0.1682	-8.8527E-05	-0.57912	-0.0003048	-0.74732	-0.00039333	526.3161659756024	52.83	0.76682	52.682	52.366	53.132	-0.14723					44	17	3	0	0	0	0.024389	1	5709	5709		35.152	0	1	1101300			64619	4894	45510	45575	69867	69867					0.09529424605557324
QTSKNLTLFQA	11	Unmodified	_QTSKNLTLFQA_					0	0	0		MYO18A|p.R1190K|1|0.28|ENSG00000196535|chr17:29099701-29099701|C/T|missense_variant	MYO18A|p.R1190K|1|0.28|ENSG00000196535|chr17:29099701-29099701|C/T|missense_variant	MYO18A|p.R1190K|1|0.28|ENSG00000196535|chr17:29099701-29099701|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8947448730469	3	417.562827	1249.66665	0.1313	5.4827E-05	-0.38344	-0.00016011	-0.25213	-0.00010528	417.56267863198497	30.212	0.34911	30.063	29.75	30.099	-0.14952					13	7	2	0	0	0	0.024742	1	1889	1889		32.034	5.9707	1	295300			64620	18011	45511	45576	69868	69868					0.05180453734942603
QTSLVLTQV	9	Unmodified	_QTSLVLTQV_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7876892089844	2	494.787307	987.560061	-0.58214	-0.00028803	0.44691	0.00022113	-0.13522	-6.6907E-05	494.78740502886814	64.78	1.0237	64.78	64.203	65.226	0					68	27	4	0	0	0	0.020687	2	7641	7632;7641		148.99	21.525	1	5156000			64621	8836	45512	45577	69869;69870	69870					0.065783232404101
QTSLVLTQV	9	Unmodified	_QTSLVLTQV_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7870788574219	2	494.787307	987.560061	-1.377	-0.00068132	1.1518	0.00056992	-0.22515	-0.0001114	494.78772899302334	65.077	0.77506	64.814	64.532	65.307	-0.2626					57	20	4	0	0	0	0.048057	3	7657	7652;7657;7662		129.42	13.927	1	5070900			64622	8836	45512	45577	69871;69872;69873	69872					0.065783232404101
QTSLVLTQV	9	Unmodified	_QTSLVLTQV_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7869567871094	2	494.787307	987.560061	-1.1093	-0.00054889	1.39	0.00068777	0.28068	0.00013888	494.78792265157637	65.084	0.6497	64.882	64.657	65.307	-0.20254					33	15	3	0	0	0	0.33603	1	7430	7430		70.816	6.6089	1	1211400			64623	8836	45512	45577	69874	69874					0.065783232404101
QTSLVLTQV	9	Unmodified	_QTSLVLTQV_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.787307	987.560061	-0.78954	-0.00039065	1.0017	0.00049562	0.21216	0.00010497	494.7877373392748	65.076	0.68851	64.841	64.607	65.296	-0.2345	0.017745	0.00017947	NaN	148.99	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1376900			64624	8836	45512	45577							0.065783232404101
QTSLVLTQV	9	Unmodified	_QTSLVLTQV_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.787307	987.560061	-0.53734	-0.00026587	0.6037	0.0002987	0.066352	3.283E-05	494.7875193688865	65.099	0.60371	64.843	64.621	65.225	-0.25562	0.019594	-0.00021438	NaN	148.99	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154300			64625	8836	45512	45577							0.065783232404101
QTSLYLMSLL	10	Unmodified	_QTSLYLMSLL_					0	0	0		ENST00000469228.1_1_10:104853627-104854248:-|nuORF	ENST00000469228.1_1_10:104853627-104854248:-|nuORF	ENST00000469228.1_1_10:104853627-104854248:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.8377075195312	2	584.81775	1167.62095	-1.6259	-0.00095083	-1.5068	-0.00088118	-3.1326	-0.001832	584.8161323865107	52.913	0.18516	52.913	52.789	52.974	0					7	4	2	0	0	0	0.03519	1	5689	5689		51.193	1.7511	1	91617			64626	14901	45513	45578	69875	69875					0.04384092228360714
QTSLYLMSLL	10	Unmodified	_QTSLYLMSLL_					0	0	0		ENST00000469228.1_1_10:104853627-104854248:-|nuORF	ENST00000469228.1_1_10:104853627-104854248:-|nuORF	ENST00000469228.1_1_10:104853627-104854248:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	584.81775	1167.62095	-1.8928	-0.001107	2.7053	0.0015821	0.81249	0.00047516	584.8193842907888	53.452	0.54282	53.305	53.023	53.566	-0.14723	0.12655	0.0017756	NaN	51.193	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180450			64627	14901	45513	45578							0.04384092228360714
QTSLYLMSLL	10	Unmodified	_QTSLYLMSLL_					0	0	0		ENST00000469228.1_1_10:104853627-104854248:-|nuORF	ENST00000469228.1_1_10:104853627-104854248:-|nuORF	ENST00000469228.1_1_10:104853627-104854248:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	584.81775	1167.62095	-0.017907	-1.0472E-05	0.65578	0.00038351	0.63787	0.00037304	584.818323074533	53.222	0.35757	53.318	53.161	53.518	0.095669	0.13935	-0.00062164	NaN	51.193	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220610			64628	14901	45513	45578							0.04384092228360714
QTSMEVSDL	9	Unmodified	_QTSMEVSDL_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7139587402344	2	505.228965	1008.44338	-0.68083	-0.00034397	2.1246	0.0010734	1.4438	0.00072944	505.23002702247913	29.394	0.59589	29.221	28.937	29.533	-0.17258					23	13	2	0	0	0	0.024405	1	1776	1776		20.947	3.4789	1	217420			64629	2042	45514	45579	69876	69876					-0.060507830416327124
QTSNCLDL	8	Unmodified	_QTSNCLDL_					0	0	0			REV__ENSG00000100312|ENST00000216139|ACR	REV__ENSG00000100312|ENST00000216139|ACR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.2400207519531	2	447.205292	892.396032	0.74929	0.00033509	-0.26462	-0.00011834	0.48467	0.00021675	447.20612096032903	54.47	0.38007	54.264	54.122	54.502	-0.20613					13	9	2	0	0	0	0.027866	1	5759	5759		44.117	0	1	116990	+		64630	21086	45515	45580	69877	69877					-0.05447017521987618
QTSNQQEI	8	Unmodified	_QTSNQQEI_					0	0	0			REV__OPRM1|p.R367Q|1|0.47|ENSG00000112038|chr6:154091408-154091408|G/A|missense_variant	REV__OPRM1|p.R367Q|1|0.47|ENSG00000112038|chr6:154091408-154091408|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2837219238281	2	474.225071	946.435589	0.25165	0.00011934	-2.8609	-0.0013567	-2.6092	-0.0012374	474.2230225419071	53.878	0.84897	53.731	53.456	54.305	-0.14723					38	23	3	0	0	0	0.027866	1	5807	5807		23.042	4.7181	1	526840	+		64631	37305	45516	45581	69878	69878					-0.03977174246904269
QTSPSPPSPL	10	Unmodified	_QTSPSPPSPL_					0	0	0			REV__ENSG00000108018|ENST00000263054|SORCS1	REV__ENSG00000108018|ENST00000263054|SORCS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3237609863281	2	505.761289	1009.50803	-0.072775	-3.6807E-05	-0.7559	-0.00038231	-0.82868	-0.00041911	506.2600080196944	79.013	0.3804	78.862	78.563	78.943	-0.15051					12	8	2	0	0	0	0.03519	1	9426	9426		64.207	19.83	1	26919	+		64632	21707	45517	45582	69879	69879					0.0036515982666287528
QTSSRFKV	8	Unmodified	_QTSSRFKV_					0	0	0			REV__ENSG00000198887|ENST00000361138|SMC5	REV__ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.762451171875	2	476.764166	951.513779	0.18973	9.0456E-05	-4.0698	-0.0019404	-3.8801	-0.0018499	476.7620701585215	64.209	1.8639	63.957	63.553	65.417	-0.2514					140	50	5	0	0	0	0.73796	1	7544	7544		64.207	0.901	1	18540000	+		64633	28509	45518	45583	69880	69880					0.036083031289990686
QTSSRFKV	8	Unmodified	_QTSSRFKV_					0	0	0			REV__ENSG00000198887|ENST00000361138|SMC5	REV__ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.3063049316406	2	476.764166	951.513779	0.11794	5.623E-05	-4.1635	-0.001985	-4.0456	-0.0019288	476.7620544171775	64.158	0.89499	63.93	63.328	64.223	-0.22773					37	22	2	0	0	0	0.027866	1	7307	7307		45.972	16.823	1	957490	+		64634	28509	45518	45583	69881	69881					0.036083031289990686
QTTHTGEKP	9	Unmodified	_QTTHTGEKP_					0	0	0		ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	ENSG00000176371|ENST00000546148|ZSCAN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.313232421875	2	499.748713	997.482873	0.086683	4.3319E-05	-3.173	-0.0015857	-3.0863	-0.0015424	499.7468121081604	76.557	1.3791	76.305	75.484	76.863	-0.25162					49	33	2	0	0	0	0.024344	1	9030	9030		54.776	19.158	1	81834			64635	8632	45519	45584	69882	69882					-0.015968949759098905
QTTKGHAI	8	Unmodified	_QTTKGHAI_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.72222900390625	2	428.237784	854.461016	-0.57662	-0.00024693	0.55712	0.00023858	-0.0195	-8.3507E-06	428.2378810627924	32.627	1.4331	32.639	32.221	33.654	0.011799					60	38	3	0	0	0	0.027866	1	2296	2296		17.365	0	1	1642900	+		64636	28474	45520	45585	69883	69883					0.027963450661786737
QTTKILPL	8	Unmodified	_QTTKILPL_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.26055908203125	2	457.289485	912.564418	-0.067382	-3.0813E-05	0.089087	4.0739E-05	0.021706	9.9258E-06	457.2892712320456	77.77	0.3309	77.786	77.658	77.989	0.015907					11	7	2	0	0	0	0.027866	1	9548	9548		17.365	0	1	42563	+		64637	36740	45521	45586	69884	69884					0.10463832454001931
QTTLFNQL	8	Unmodified	_QTTLFNQL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2375183105469	2	482.758549	963.502546	0.020497	9.8951E-06	-0.3823	-0.00018456	-0.3618	-0.00017466	482.75826374593504	69.671	0.7023	69.42	69.156	69.858	-0.25063					40	16	3	0	0	0	0.027866	1	8131	8131		35.618	7.736	1	797090	+		64638	29044	45522	45587	69885	69885					0.01933481034848228
QTTNLIVPK	9	Unmodified	_QTTNLIVPK_					0	0	0			REV__LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	REV__LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.830810546875	2	507.303124	1012.5917	0.034367	1.7434E-05	-0.96441	-0.00048925	-0.93004	-0.00047181	507.3025297236616	46.723	0.45867	46.626	46.438	46.897	-0.096649					19	12	2	0	0	0	0.023454	1	4524	4524		71.877	3.0313	1	451180	+		64639	22618	45523	45588	69886	69886					0.08590315994376851
QTTNLIVPK	9	Unmodified	_QTTNLIVPK_					0	0	0			REV__LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	REV__LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	507.303124	1012.5917	-0.19385	-9.8341E-05	-0.41069	-0.00020834	-0.60454	-0.00030668	507.3027951218582	46.921	0.53866	46.768	46.514	47.052	-0.15301	0.036729	9.9829E-05	NaN	71.877	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2619800	+		64640	22618	45523	45588							0.08590315994376851
QTTNRGPK	8	Unmodified	_QTTNRGPK_					0	0	0			REV__ENSG00000092421|ENST00000343348|SEMA6A	REV__ENSG00000092421|ENST00000343348|SEMA6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2427978515625	2	451.246141	900.477728	1.5233	0.0006874	3.4603	0.0015614	4.9836	0.0022488	451.2474277033517	59.676	0.36	59.676	59.52	59.88	0					11	9	2	0	0	0	0.027866	1	6831	6831		24.203	13.337	1	59978	+		64641	20932	45524	45589	69887	69887					0.023508459521394798
QTTNRGPK	8	Unmodified	_QTTNRGPK_					0	0	0			REV__ENSG00000092421|ENST00000343348|SEMA6A	REV__ENSG00000092421|ENST00000343348|SEMA6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.24786376953125	2	451.246141	900.477728	1.8903	0.00085297	1.2061	0.00054425	3.0963	0.0013972	451.2465912084251	23.918	1.1514	23.737	23.09	24.241	-0.18089					49	26	3	0	0	0	0.6536	1	975	975		71.296	2.811	1	1975000	+		64642	20932	45524	45589	69888	69888					0.023508459521394798
QTTPEYLF	8	Unmodified	_QTTPEYLF_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.31365966796875	2	499.745108	997.475663	0.26478	0.00013232	4.0241	0.002011	4.2889	0.0021434	499.7466221082661	77.51	1.4484	77.51	77.04	78.489	0					46	34	2	0	0	0	0.027866	1	9558	9558		40.573	0	1	75245	+		64643	25914	45525	45590	69889	69889					-0.02317627576326231
QTTRRSVR	8	Unmodified	_QTTRRSVR_					0	0	0		ENSG00000127870|ENST00000381588|RNF6;ENST00000339626.5_1_13:41194051-41194435:+|nuORF	ENSG00000127870|ENST00000381588|RNF6	ENSG00000127870|ENST00000381588|RNF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2749328613281	2	502.291414	1002.56827	-1.1256	-0.00056536	2.8706	0.0014419	1.745	0.0008765	502.29256915382666	49.031	0.50996	49.105	48.842	49.352	0.074196					28	13	3	0	0	0	0.027866	1	4946	4946		21.96	0	1	345400			64644	4263	45526	45591	69890	69890					0.06709315000421157
QTTTLEMF	8	Unmodified	_QTTTLEMF_					0	0	0		nc|ENSG00000177800|Q5T7P6|TMEM78	nc|ENSG00000177800|Q5T7P6|TMEM78	nc|ENSG00000177800|Q5T7P6|TMEM78	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7322082519531	2	485.731143	969.447733	-0.22805	-0.00011077	0.1176	5.7122E-05	-0.11045	-5.365E-05	485.73103754378656	72.643	0.91885	72.444	72.12	73.039	-0.19811					47	21	3	0	0	0	0.93274	1	8539	8539		47.916	9.1095	1	1997000			64645	18547	45527	45592	69891	69891					-0.03821273828066296
QTTTLPQKV	9	Unmodified	_QTTTLPQKV_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.77264404296875	2	508.292756	1014.57096	-0.29628	-0.00015059	-0.20197	-0.00010266	-0.49825	-0.00025326	508.29290074589284	33.839	0.66168	33.834	33.599	34.261	-0.0045624					30	16	3	0	0	0	0.022657	1	2433	2433		67.494	0	1	592230			64646	4025	45528	45593	69892	69892					0.06425725614712974
QTTTLPQKV	9	Unmodified	_QTTTLPQKV_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7723083496094	2	508.292756	1014.57096	-0.36488	-0.00018547	0.48647	0.00024727	0.12159	6.1802E-05	508.29302173072256	33.854	0.52751	33.91	33.732	34.26	0.056572					23	12	3	0	0	0	0.023274	1	2405	2405		87.696	23.489	1	629200			64647	4025	45528	45593	69893	69893					0.06425725614712974
QTTVPPATMRI	11	Unmodified	_QTTVPPATMRI_					0	0	0		ART4|p.P14Q|1|0.59|ENSG00000111339|chr12:14843073-14843073|G/T|missense_variant	ART4|p.P14Q|1|0.59|ENSG00000111339|chr12:14843073-14843073|G/T|missense_variant	ART4|p.P14Q|1|0.59|ENSG00000111339|chr12:14843073-14843073|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.22479248046875	3	405.556907	1213.64889	0.1102	4.4692E-05	3.9912	0.0016186	4.1014	0.0016633	405.5579204907418	26.82	0.2066	26.807	26.662	26.869	-0.012983					6	4	2	0	0	0	0.024761	1	1395	1395		14.243	9.3571	1	34192			64648	135	45529	45594	69894	69894					0.05061415208433573
QTVADLLAY	9	Unmodified	_QTVADLLAY_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2552490234375	2	497.266207	992.517862	-0.016328	-8.1191E-06	-1.7646	-0.00087748	-1.7809	-0.0008856	497.2653223993636	72.08	1.3127	71.805	71.1	72.412	-0.27509					57	31	3	0	0	0	0.024412	1	8398	8398		24.203	7.7296	1	801040	+		64649	28230	45530	45595	69895	69895					0.021303478320305658
QTVAQQRA	8	Unmodified	_QTVAQQRA_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.2471923828125	2	451.246141	900.477728	0.36809	0.0001661	2.774	0.0012517	3.142	0.0014178	451.24721146039826	24.015	0.75046	23.8	23.467	24.218	-0.2151					34	16	3	0	0	0	0.6248	1	1013	1013		73.975	5.1879	1	1223200			64650	4371	45531	45596	69896	69896					0.02350845952128111
QTVARNRG	8	Unmodified	_QTVARNRG_					0	0	0		nc|ENSG00000127377|Q8WXF5-2|CRYGN;ENST00000476631.5_1_7:151134976-151137565:-|nuORF	nc|ENSG00000127377|Q8WXF5-2|CRYGN	nc|ENSG00000127377|Q8WXF5-2|CRYGN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.27105712890625	2	451.251757	900.488962	-0.59178	-0.00026704	4.0748	0.0018387	3.483	0.0015717	451.25355213692234	75.649	0.76204	75.649	75.232	75.994	0					29	20	2	0	0	0	0.027866	1	9240	9240		30.504	0	1	380500			64651	15091	45532	45597	69897	69897					0.0347366804627427
QTVGVRVE	8	Unmodified	_QTVGVRVE_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.251708984375	2	444.250892	886.48723	-0.65367	-0.00029039	-4.0857	-0.0018151	-4.7394	-0.0021055	444.24851332727854	45.202	0.48236	45.102	44.942	45.424	-0.099445					21	13	2	0	0	0	0.027866	1	4288	4288		26.693	10.22	1	485440	+		64652	19887	45533	45598	69898	69898					0.03944614237661881
QTVISKIL	8	Unmodified	_QTVISKIL_					0	0	0		ENST00000420986.6_2_11:111951254-111953238:+|nuORF	ENST00000420986.6_2_11:111951254-111953238:+|nuORF	ENST00000420986.6_2_11:111951254-111953238:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.2862854003906	2	451.289485	900.564418	-0.469	-0.00021166	0.19003	8.5758E-05	-0.27897	-0.0001259	451.2893986433442	32.894	0.84511	32.728	32.476	33.321	-0.16565					41	20	4	0	0	0	0.34573	1	2285	2285		104.75	5.3716	1	1014800			64653	13988	45534	45599	69899	69899					0.11015832453995245
QTVKPKRCRKV	11	Unmodified	_QTVKPKRCRKV_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.25482177734375	3	448.274846	1341.80271	0.040095	1.7973E-05	3.7233	0.0016691	3.7634	0.001687	448.2763330499055	102.44	0.6045	102.32	102.07	102.67	-0.12666					33	13	4	0	0	0	0.024816	1	12716	12716		8.0344	3.391	1	139540	+		64654	26604	45535	45600	69900	69900					0.14547869764578536
QTVKPKRCRKV	11	Unmodified	_QTVKPKRCRKV_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	448.274846	1341.80271	-0.17883	-8.0165E-05	3.9593	0.0017749	3.7805	0.0016947	448.27649644137335	102.37	0.64951	102.37	102.08	102.73	0	0.028161	0.00050328	NaN	8.0344	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234920	+		64655	26604	45535	45600							0.14547869764578536
QTVKPKRCRKV	11	Unmodified	_QTVKPKRCRKV_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	448.274846	1341.80271	0.12894	5.7799E-05	3.667	0.0016438	3.7959	0.0017016	448.276353529669	102.31	0.76566	102.32	101.98	102.74	0.0073395	-0.023907	0.00011014	NaN	8.0344	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230160	+		64656	26604	45535	45600							0.14547869764578536
QTVKPKRCRKV	11	Unmodified	_QTVKPKRCRKV_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	448.274846	1341.80271	0.26385	0.00011828	3.6828	0.0016509	3.9466	0.0017692	448.2763280032278	102.39	0.5705	102.38	102.11	102.68	-0.0054474	0.040155	0.00013141	NaN	8.0344	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196640	+		64657	26604	45535	45600							0.14547869764578536
QTVKPKRCRKV	11	Unmodified	_QTVKPKRCRKV_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	448.274846	1341.80271	0.51752	0.00023199	3.2232	0.0014449	3.7407	0.0016769	448.2761935196343	102.43	0.67754	102.3	102.07	102.75	-0.1293	-0.040471	-0.00048665	NaN	8.0344	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217180	+		64658	26604	45535	45600							0.14547869764578536
QTVKPKRCRKV	11	Unmodified	_QTVKPKRCRKV_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	448.274846	1341.80271	0.27508	0.00012331	3.4904	0.0015646	3.7655	0.001688	448.27631385641104	102.54	0.54967	102.37	102.09	102.64	-0.17178	0.02314	-0.00012734	NaN	8.0344	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126790	+		64659	26604	45535	45600							0.14547869764578536
QTVLEPDL	8	Unmodified	_QTVLEPDL_					0	0	0			REV__ENST00000393038.2_1_17:57784804-57784864:-|nuORF	REV__ENST00000393038.2_1_17:57784804-57784864:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.1557312011719	2	457.745108	913.475663	-0.14557	-6.6633E-05	1.8812	0.00086112	1.7356	0.00079448	457.7457880016195	39.799	0.54042	39.649	39.319	39.859	-0.1497					23	13	2	0	0	0	0.027866	1	3410	3410		29.15	22.414	1	212270	+		64660	31629	45536	45601	69901	69901					0.015463724236610688
QTVLLICEP	9	Unmodified	_QTVLLICEP_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.830810546875	2	508.27826	1014.54197	0.045846	2.3303E-05	-2.084	-0.0010593	-2.0382	-0.001036	508.77944339722046	46.614	0.60213	46.518	46.187	46.789	-0.096649					25	16	2	0	0	0	0.024257	1	4524	4524		67.494	9.6824	1	321660	+		64661	28792;36925	45537	45602	69902	69902					0.03527864994055108
QTVLLIPLR	9	Unmodified	_QTVLLIPLR_					0	0	0		ENST00000443619.6_1_2:65541275-65559155:-|nuORF	ENST00000443619.6_1_2:65541275-65559155:-|nuORF	ENST00000443619.6_1_2:65541275-65559155:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.314453125	2	526.844959	1051.67537	-0.26073	-0.00013736	-1.2514	-0.00065927	-1.5121	-0.00079664	526.8438953844267	75.069	0.5284	74.813	74.537	75.065	-0.25638					18	12	2	0	0	0	0.024506	1	9147	9147		16.473	0	1	171860			64662	14403	45538	45603	69903	69903					0.15159472162054044
QTVLLIPLR	9	Unmodified	_QTVLLIPLR_					0	0	0		ENST00000443619.6_1_2:65541275-65559155:-|nuORF	ENST00000443619.6_1_2:65541275-65559155:-|nuORF	ENST00000443619.6_1_2:65541275-65559155:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.314697265625	2	526.844959	1051.67537	-0.052047	-2.7421E-05	-0.93849	-0.00049444	-0.99054	-0.00052186	526.844093839893	74.857	0.48286	74.867	74.649	75.132	0.010376					21	11	2	0	0	0	0.024457	1	9065	9065		37.159	8.0096	1	134360			64663	14403	45538	45603	69904	69904					0.15159472162054044
QTVLLLLPLL	10	Unmodified	_QTVLLLLPLL_					0	0	0		ENSG00000157445|ENST00000474759|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENST00000478261.5_1_3:55107739-55108230:+|nuORF	ENSG00000157445|ENST00000474759|CACNA2D3	ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.26904296875	2	561.878468	1121.74238	0.47207	0.00026524	4.1612	0.0023381	4.6333	0.0026034	562.380466237311	79.838	0.24927	79.592	79.405	79.654	-0.2465					7	5	2	0	0	0	0.03519	1	9535	9535		25.574	7.312	1	34028			64664	6597	45539	45604	69905	69905					0.1863808265318312
QTVPVVQISY	10	Unmodified	_QTVPVVQISY_					0	0	0			REV__ENST00000464187.1_1_9:137545303-137583524:+|nuORF	REV__ENST00000464187.1_1_9:137545303-137583524:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7672119140625	2	567.313689	1132.61282	0.06512	3.6943E-05	-0.60237	-0.00034173	-0.53725	-0.00030479	567.313392559221	41.284	0.6683	41.161	40.762	41.43	-0.12318					37	18	3	0	0	0	0.03519	1	3650	3650		36.447	0	1	245730	+		64665	32962	45540	45605	69906	69906					0.051822813032458726
QTVQPMATPA	10	Unmodified	_QTVQPMATPA_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP;nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP;nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.75146484375	2	522.263142	1042.51173	-0.2426	-0.0001267	-3.9591	-0.0020677	-4.2017	-0.0021944	522.2610023676606	42.518	0.77769	42.288	41.932	42.71	-0.2303					39	20	3	0	0	0	0.03519	1	3790	3790		35.152	15.155	1	1455800			64666	18639;18638	45541	45606	69907	69907					-0.007824936711358532
QTVQPSPHR	9	Unmodified	_QTVQPSPHR_					0	0	0			REV__nc|ENSG00000187510|Q6ZR37-3|PLEKHG7	REV__nc|ENSG00000187510|Q6ZR37-3|PLEKHG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3135375976562	2	525.277972	1048.54139	-0.21	-0.00011031	-4.2742	-0.0022451	-4.4842	-0.0023555	525.275097865672	73.448	0.22409	73.458	73.255	73.479	0.0096512					9	5	2	0	0	0	0.024457	1	8889	8889		5.9211	2.5111	1	90710	+		64667	37035	45542	45607	69908	69908					0.01906206389230647
QTVSPAEKW	9	Unmodified	_QTVSPAEKW_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34786974-34787073:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2696533203125	2	523.269281	1044.52401	-0.33393	-0.00017473	-0.46377	-0.00024268	-0.79769	-0.00041741	523.2691423859654	41.856	1.2225	41.733	41.267	42.49	-0.12299					91	32	4	0	0	0	0.062622	4	3703	3703;3713;3725;3736		124.08	30.937	1	10971000			64668	1563	45543	45608	69909;69910;69911;69912	69909					0.0035286606357658457
QTVSPAEKW	9	Unmodified	_QTVSPAEKW_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34786974-34787073:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2693481445312	2	523.269281	1044.52401	-0.3291	-0.00017221	-0.41148	-0.00021532	-0.74058	-0.00038752	523.269112164146	42.049	1.2948	41.817	41.43	42.725	-0.23186					91	34	4	0	0	0	0.11727	5	3729	3721;3729;3741;3754;3766		106.68	42.471	1	12061000			64669	1563	45543	45608	69913;69914;69915;69916;69917	69914					0.0035286606357658457
QTVSPAEKW	9	Unmodified	_QTVSPAEKW_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000568912.1_1_15:34786974-34787073:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2686767578125	2	523.269281	1044.52401	-0.053306	-2.7894E-05	-0.7843	-0.0004104	-0.83761	-0.00043829	523.2689342833999	42.078	1.1618	41.848	41.508	42.67	-0.23029					85	31	4	0	0	0	0.016542	5	3743	3721;3731;3743;3754;3767		154.12	69.203	1	12705000			64670	1563	45543	45608	69918;69919;69920;69921;69922	69920					0.0035286606357658457
QTVTKLVIL	9	Unmodified	_QTVTKLVIL_					0	0	0			REV__nc|ENSG00000163006|Q96M89-2|CCDC138	REV__nc|ENSG00000163006|Q96M89-2|CCDC138	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.830810546875	2	507.831517	1013.64848	0.021877	1.111E-05	-0.71071	-0.00036092	-0.68884	-0.00034981	507.83104815033516	46.687	1.1208	46.59	46.331	47.452	-0.096649					75	30	3	0	0	0	0.12914	2	4524	4524;4544		104.06	8.2416	1	3057700	+		64671	25520	45544	45609	69923;69924	69923					0.1422036355088494
QTVTLGRR	8	Unmodified	_QTVTLGRR_					0	0	0			REV__AluJr_dup30890|chr7:56010465-56010753:-|1.2381492194187598|0.4309280836060434|1.52|522.0|16|3|anti-sense	REV__AluJr_dup30890|chr7:56010465-56010753:-|1.2381492194187598|0.4309280836060434|1.52|522.0|16|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7768859863281	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.0442	1	9983	9983		30.318	9.3708	1	1283800	+		64672	19116	45545	45610	69925	69925					0.07307411740180214
QTVVEKYKESI	11	Unmodified	_QTVVEKYKESI_					0	0	0			REV__ENSG00000144410|ENST00000272852|CPO	REV__ENSG00000144410|ENST00000272852|CPO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2656555175781	3	441.910004	1322.70818	0.22193	9.8074E-05	-2.0704	-0.00091493	-1.8485	-0.00081685	441.9089421708652	39.402	0.51302	39.402	39.148	39.661	0					33	14	3	0	0	0	0.024747	1	3377	3377		26.75	0	1	547090	+		64673	24333	45546	45611	69926	69926					0.05973589703626203
QTWTAHAT	8	Unmodified	_QTWTAHAT_					0	0	0			REV__ENST00000254066.9_1_17:38512474-38512714:+|nuORF	REV__ENST00000254066.9_1_17:38512474-38512714:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2586669921875	2	458.219591	914.42463	-0.16028	-7.3444E-05	0.47094	0.00021579	0.31066	0.00014235	458.219672068587	27.877	0.48639	27.958	27.722	28.208	0.081291					22	11	2	0	0	0	0.027866	1	1511	1511		17.365	3.5896	1	224440	+		64674	29523	45547	45612	69927	69927					-0.03600531830545606
QTWWHGVLAW	10	Unmodified	_QTWWHGVLAW_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	642.319091796875	2	642.31964	1282.62473	-1.1369	-0.00073027	0.73529	0.00047229	-0.40163	-0.00025797	642.3200474539194	83.544	1.367	83.333	82.919	84.286	-0.21159					84	31	5	0	0	0	0.47726	1	10072	10072		90.777	16.612	1	735460			64675	849	45548	45613	69928	69928					-0.005280571628873076
QTWWHGVLAW	10	Unmodified	_QTWWHGVLAW_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	642.3121337890625	2	642.31964	1282.62473	0.50616	0.00032512	-0.75892	-0.00048747	-0.25276	-0.00016235	642.319002089403	83.349	1.1912	83.18	82.948	84.139	-0.16916					69	27	5	0	0	0	0.10795	1	10074	10074		133.81	46.058	1	854450			64676	849	45548	45613	69929	69929					-0.005280571628873076
QTWWHGVLAW	10	Unmodified	_QTWWHGVLAW_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	642.31964	1282.62473	-0.35408	-0.00022743	-0.12598	-8.0922E-05	-0.48007	-0.00030836	642.3193964911724	83.452	1.4553	83.313	82.867	84.322	-0.13861	0.037837	-0.00015603	NaN	133.81	75	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671370			64677	849	45548	45613							-0.005280571628873076
QTYAKIHF	8	Unmodified	_QTYAKIHF_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.2458801269531	2	504.269084	1006.52362	-0.13707	-6.9118E-05	-1.0111	-0.00050988	-1.1482	-0.00057899	504.2684483813701	33.095	2.0524	32.864	31.702	33.755	-0.23107					111	49	3	0	0	0	0.027866	1	2323	2323		40.573	4.1259	1	506740			64678	10206	45549	45614	69930	69930					0.020614911343727726
QTYAKLRQ	8	Unmodified	_QTYAKLRQ_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.2454528808594	2	504.285266	1006.55598	-0.71985	-0.00036301	0.80483	0.00040587	0.084981	4.2854E-05	504.2853245633302	32.906	0.56041	32.741	32.556	33.117	-0.16565					16	13	2	0	0	0	0.027866	1	2296	2296		16.473	3.514	1	178500			64679	4929	45550	45615	69931	69931					0.05296278537366561
QTYDLIERRG	10	Unmodified	_QTYDLIERRG_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	417.8589782714844	3	417.554443	1249.6415	-0.21251	-8.8733E-05	0.46656	0.00019481	0.25405	0.00010608	417.55451807037673	31.352	1.38	31.352	30.92	32.3	0					76	33	3	0	0	0	0.03519	1	2193	2193		21.032	4.5024	1	223070			64680	1604	45551	45616	69932	69932					0.02666398932365155
QTYFFICFAVM	11	Unmodified	_QTYFFICFAVM_					0	0	0		ENSG00000165202|ENST00000297913|OR1Q1	ENSG00000165202|ENST00000297913|OR1Q1	ENSG00000165202|ENST00000297913|OR1Q1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7510070800781	3	457.215494	1368.62465	0.017947	8.2056E-06	2.4431	0.001117	2.4611	0.0011252	457.21641670235397	42.35	0.84975	42.218	41.753	42.602	-0.1322					35	24	2	0	0	0	0.024736	1	3789	3789		19.263	0	1	971880			64681	7380	45552	45617	69933	69933					-0.0449156126944672
QTYGSNPTNSF	11	Unmodified	_QTYGSNPTNSF_					0	0	0			REV__ENST00000531668.1_1_11:34117397-34120911:+|nuORF	REV__ENST00000531668.1_1_11:34117397-34120911:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7452087402344	3	405.847403	1214.52038	1.5228	0.00061803	0.64038	0.0002599	2.1632	0.00087793	406.18209846551736	45.519	0.20444	45.563	45.409	45.614	0.043877					7	5	2	0	0	0	0.024735	1	4348	4348		31.634	10.797	1	36626	+		64682	23538	45553	45618	69934	69934					-0.07829848500978187
QTYHLLSP	8	Unmodified	_QTYHLLSP_					0	0	0			REV__ENSG00000184384|ENST00000524717|MAML2	REV__ENSG00000184384|ENST00000524717|MAML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7967529296875	2	479.753267	957.491981	-0.19245	-9.2326E-05	3.4853	0.0016721	3.2929	0.0015798	479.75471524297706	45.5	0.90934	45.544	45.214	46.123	0.04388					45	26	3	0	0	0	0.027866	1	4418	4418		57.811	2.3071	1	1274900	+		64683	27666	45554	45619	69935	69935					0.01153498380426754
QTYVPTPQQ	9	Unmodified	_QTYVPTPQQ_					0	0	0			REV__nc|ENSG00000204842|Q99700-2|ATXN2	REV__nc|ENSG00000204842|Q99700-2|ATXN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3084106445312	2	531.266739	1060.51892	-0.7694	-0.00040876	-0.21497	-0.00011421	-0.98438	-0.00052297	531.2663157590331	37.721	1.4017	37.503	36.556	37.957	-0.21848					52	36	2	0	0	0	0.024447	1	3103	3103		25.574	0	1	245320	+		64684	37083	45555	45620	69936	69936					-0.008914377990549838
QTYYVAGFS	9	Unmodified	_QTYYVAGFS_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9;nc|ENSG00000069431|O60706|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7926025390625	2	518.242732	1034.47091	0.56594	0.00029329	-3.6249	-0.0018786	-3.059	-0.0015853	518.2432142879566	51.513	0.18953	51.398	51.245	51.435	-0.11518					5	4	2	0	0	0	0.024457	1	5284	5284		29.15	6.1071	1	49300			64685	1402	45556	45621	69937	69937					-0.044945117190763995
QVAEQFSRA	9	Unmodified	_QVAEQFSRA_					0	0	0		ENSG00000160191|ENST00000291539|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;ENST00000467162.5_1_21:44106337-44153535:+|nuORF;ENST00000495343.5_1_21:44151932-44153535:+|nuORF	ENSG00000160191|ENST00000291539|PDE9A	ENSG00000160191|ENST00000291539|PDE9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7922973632812	2	518.26453	1034.51451	1.0352	0.00053651	-2.5529	-0.0013231	-1.5177	-0.00078657	518.2634850882969	51.634	0.41582	51.45	51.218	51.634	-0.18405					14	10	2	0	0	0	0.024025	1	5314	5314		52.937	13.684	1	219550			64686	6787	45557	45622	69938	69938					-0.001369022219478211
QVAFFILLM	9	Unmodified	_QVAFFILLM_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7645874023438	2	541.309364	1080.60417	-0.16197	-8.7677E-05	2.957	0.0016006	2.795	0.001513	541.3111053683741	49.461	0.44345	49.461	49.324	49.768	0					23	11	3	0	0	0	0.024293	1	5135	5135		33.516	0	1	221310			64687	3269	45558	45623	69939	69939					0.06709636133064123
QVAGITGTRH	10	Unmodified	_QVAGITGTRH_					0	0	0		nc|ENSG00000168386|Q4L180-4|FILIP1L;ENST00000454964.3_1_14:92562711-92572896:-|nuORF	nc|ENSG00000168386|Q4L180-4|FILIP1L	nc|ENSG00000168386|Q4L180-4|FILIP1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.8323974609375	2	520.285797	1038.55704	-0.5719	-0.00029755	-0.86107	-0.000448	-1.433	-0.00074556	520.2852428535796	21.065	0.34401	20.975	20.814	21.158	-0.090092					11	6	2	0	0	0	0.03519	1	595	595		49.536	15.364	1	38860			64688	18492	45559	45624	69940	69940					0.03930492906283689
QVAGQASLGQP	11	Unmodified	_QVAGQASLGQP_					0	0	0		ENST00000544691.6_1_14:24911628-24911775:-|nuORF	ENST00000544691.6_1_14:24911628-24911775:-|nuORF	ENST00000544691.6_1_14:24911628-24911775:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2725830078125	2	528.277638	1054.54072	-0.67483	-0.0003565	3.3607	0.0017754	2.6858	0.0014189	528.279433515442	103.99	0.96535	103.86	103.38	104.34	-0.12927					48	27	3	0	0	0	0.87596	1	12971	12971		53.089	3.6474	1	346620			64689	16485	45560	45625	69941	69941					0.015633669495173308
QVAIVAFIF	9	Unmodified	_QVAIVAFIF_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.8150329589844	2	504.299853	1006.58515	-0.092035	-4.6413E-05	-4.0143	-0.0020244	-4.1063	-0.0020708	504.2975891766578	74.878	0.58341	74.614	74.318	74.901	-0.26326					21	13	2	0	0	0	0.024412	1	8871	8871		24.203	0	1	174690	+		64690	28400;24615	45561	45626	69942	69942					0.0821242283365109
QVAKRGQKP	9	Unmodified	_QVAKRGQKP_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2716064453125	2	506.306532	1010.59851	-0.47848	-0.00024226	-0.036071	-1.8263E-05	-0.51455	-0.00026052	506.30648926668584	30.933	0.46442	30.944	30.75	31.214	0.011797					17	10	2	0	0	0	0.024354	1	2041	2041		47.916	10.756	1	109030	+		64691	26603	45562	45627	69943	69943					0.0936367366560944
QVAKTKQQI	9	Unmodified	_QVAKTKQQI_					0	0	0		ENST00000487376.5_1_6:30698694-30708587:-|nuORF;nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1	ENST00000487376.5_1_6:30698694-30708587:-|nuORF	ENST00000487376.5_1_6:30698694-30708587:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7980346679688	2	522.314023	1042.61349	-0.53898	-0.00028152	-0.34272	-0.00017901	-0.8817	-0.00046053	522.3140825431799	20.163	1.106	20.059	19.791	20.897	-0.10477					51	22	4	0	0	0	0.024427	1	493	493		26.693	0	1	984390			64692	5113	45563	45628	69944	69944					0.0938912074293512
QVALGTSKLN	10	Unmodified	_QVALGTSKLN_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2900390625	2	515.798206	1029.58186	-0.72756	-0.00037527	0.26598	0.00013719	-0.46158	-0.00023808	515.7982037882963	28.099	0.74175	27.854	27.42	28.162	-0.24523					29	17	3	0	0	0	0.03519	1	1646	1646		49.536	17.581	1	362120			64693	9336	45564	45629	69945	69945					0.06825127989009161
QVALGTSKLN	10	Unmodified	_QVALGTSKLN_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.798206	1029.58186	-0.73542	-0.00037933	0.34382	0.00017734	-0.39161	-0.00020199	515.798233291363	27.935	0.68642	27.767	27.445	28.132	-0.16816	-0.074838	0.00013068	NaN	49.536	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481360			64694	9336	45564	45629							0.06825127989009161
QVALGTSKLN	10	Unmodified	_QVALGTSKLN_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.798206	1029.58186	-0.32508	-0.00016768	-0.23422	-0.00012081	-0.55931	-0.00028849	515.7978672200977	28.056	0.67175	27.904	27.649	28.321	-0.15195	0.062706	-0.00046563	NaN	49.536	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603790			64695	9336	45564	45629							0.06825127989009161
QVALLRLGP	9	Unmodified	_QVALLRLGP_					0	0	0			REV__ENST00000481564.1_1_7:23338971-23340720:+|nuORF	REV__ENST00000481564.1_1_7:23338971-23340720:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2925720214844	2	483.808377	965.6022	-0.56471	-0.00027321	0.68978	0.00033372	0.12507	6.0511E-05	483.8083940657096	58.073	0.42624	57.898	57.723	58.149	-0.1749					16	11	2	0	0	0	0.024412	1	6505	6505		50.025	9.4519	1	658290	+		64696	25099	45565	45630	69946	69946					0.11802343439455854
QVAPLSRATL	10	Unmodified	_QVAPLSRATL_					0	0	0			REV__ENSG00000146143|ENST00000615550|PRIM2	REV__ENSG00000146143|ENST00000615550|PRIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3130493164062	2	528.314023	1054.61349	-0.80734	-0.00042653	1.5464	0.00081701	0.73911	0.00039048	528.3148148521342	97.258	1.3155	97.258	96.748	98.063	0					61	29	3	0	0	0	1.0909	1	12438	12438		33.922	9.4024	1	290290	+		64697	24463	45566	45631	69947	69947					0.08837120742941806
QVAPSLPGWSP	11	Unmodified	_QVAPSLPGWSP_					0	0	0			REV__ENSG00000163497|ENST00000295727|FEV	REV__ENSG00000163497|ENST00000295727|FEV	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2710571289062	2	569.798206	1137.58186	0.35749	0.0002037	1.1415	0.00065041	1.499	0.00085411	569.7989458345378	49.737	0.44955	49.557	49.268	49.717	-0.18071					21	11	3	0	0	0	0.02474	1	4989	4989		20.03	0	1	278410	+		64698	25576	45567	45632	69948	69948					0.01857127988978391
QVAPVPLNV	9	Unmodified	_QVAPVPLNV_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.7638854980469	2	468.779285	935.544017	-0.038015	-1.7821E-05	0.13691	6.4179E-05	0.098892	4.6358E-05	468.77917728867504	69.115	0.64549	69.115	68.861	69.506	0					38	16	3	0	0	0	0.024457	1	8306	8306		37.159	5.2042	1	768270			64699	4214	45568	45633	69949	69949					0.07366661794185347
QVAPVPLNV	9	Unmodified	_QVAPVPLNV_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7641296386719	2	468.779285	935.544017	0.72914	0.00034181	-0.85468	-0.00040066	-0.12554	-5.8848E-05	468.7787140495347	69.454	0.6967	69.161	68.896	69.593	-0.29292					36	17	3	0	0	0	0.024427	1	8313	8313		51.335	20.832	1	724360			64700	4214	45568	45633	69950	69950					0.07366661794185347
QVAQLVKT	8	Unmodified	_QVAQLVKT_					0	0	0			REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	2	443.77146	885.528367	-1.0032	-0.0004452	2.2546	0.0010005	1.2514	0.00055533	443.7719014990355	29.479	0.38786	29.234	29.011	29.399	-0.24524					11	8	2	0	0	0	0.027866	1	1819	1819		53.351	16.192	1	40969	+		64701	25307	45569	45634	69951	69951					0.08102375277132978
QVARMEKLA	9	Unmodified	_QVARMEKLA_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7647705078125	2	523.294776	1044.575	-0.77296	-0.00040448	0.26914	0.00014084	-0.50381	-0.00026364	523.2947726589509	30.053	0.65583	30.062	29.717	30.373	0.0086708					28	15	2	0	0	0	0.024427	1	1917	1917		34.173	3.6689	1	580100			64702	7537	45570	45635	69952	69952					0.05449491836770903
QVARWGGV	8	Unmodified	_QVARWGGV_					0	0	0		ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3;ENSG00000184492|ENST00000306507|FOXD4L1;ENSG00000170122|ENST00000382500|FOXD4	ENSG00000204779|ENST00000377420|FOXD4L5	ENSG00000204779|ENST00000377420|FOXD4L5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2474670410156	2	436.740494	871.466435	0.87274	0.00038116	1.1069	0.00048343	1.9796	0.00086459	436.7401866363099	71.501	0.42946	71.213	70.998	71.427	-0.28858					12	10	2	0	0	0	0.027866	1	8601	8601		44.531	2.0566	1	90623			64703	9360	45571	45636	69953	69953					0.025560686486642226
QVASRWHVPSD	11	Unmodified	_QVASRWHVPSD_					0	0	0		nc|ENSG00000184274|P59091|LINC00315	nc|ENSG00000184274|P59091|LINC00315	nc|ENSG00000184274|P59091|LINC00315	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.78466796875	3	427.882671	1280.62618	-0.29986	-0.00012831	-0.30462	-0.00013034	-0.60448	-0.00025865	427.88161129581107	26.784	0.20778	26.548	26.456	26.663	-0.23603					5	4	2	0	0	0	0.024823	1	1424	1424		11.455	2.2428	1	14554			64704	18584	45572	45637	69954	69954					-0.0029046786480648734
QVATSQRGPIP	11	Unmodified	_QVATSQRGPIP_					0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	576.3523559570312	2	577.319837	1152.62512	-0.90393	-0.00052186	1.4147	0.00081675	0.5108	0.00029489	577.8218393406279	45.179	0.61525	45.031	44.697	45.312	-0.1488					41	17	3	0	0	0	0.024741	1	4307	4307		45.972	20.398	1	300970	+		64705	19221	45573	45638	69955	69955					0.054913177662683665
QVAVVARIL	9	Unmodified	_QVAVVARIL_					0	0	0			REV__ENST00000380520.5_1_6:2948423-2948495:-|nuORF	REV__ENST00000380520.5_1_6:2948423-2948495:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.81695556640625	2	484.816202	967.617851	-0.14146	-6.8582E-05	0.36185	0.00017543	0.22039	0.00010685	484.8163290937619	66.633	0.5708	66.385	66.021	66.592	-0.24839					46	17	4	0	0	0	0.43973	1	7645	7645		63.306	0	1	20963000	+		64706	31481	45574	45639	69956	69956					0.13274629956515582
QVAYIYKCV	9	Unmodified	_QVAYIYKCV_					0	0	0		nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF	nc|ENSG00000131236|Q01518-2|CAP1	nc|ENSG00000131236|Q01518-2|CAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.3272094726562	2	543.786253	1085.55795	-0.10137	-5.5126E-05	-3.7345	-0.0020308	-3.8359	-0.0020859	543.7839607488331	23.81	0.39399	23.608	23.398	23.792	-0.20193					11	8	2	0	0	0	0.024541	1	974	974		16.473	0	1	34469			64707	4507	45575	45640	69957	69957					0.018595712309661394
QVCALWVAW	9	Unmodified	_QVCALWVAW_					0	0	0			REV__ENSG00000175262|ENST00000377004|C1orf127	REV__ENSG00000175262|ENST00000377004|C1orf127	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2642822265625	2	538.273312	1074.53207	-0.97814	-0.00052651	2.96	0.0015933	1.9818	0.0010668	538.2747644129148	69.388	0.66038	69.166	68.937	69.597	-0.22245					35	15	3	0	0	0	0.024293	1	8060	8060		42.474	0	1	941320	+		64708	26932	45576	45641	69958	69958					-0.0022127822066977387
QVCEKHEACVG	11	Unmodified	_QVCEKHEACVG_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.887939453125	3	401.514602	1201.52198	0.99688	0.00040026	-0.28634	-0.00011497	0.71054	0.00028529	401.51427810087364	22.771	0.51078	22.583	22.236	22.746	-0.18894					13	10	2	0	0	0	0.024734	1	854	854		16.53	2.4438	1	57440	+		64709	24711	45577	45642	69959	69959					-0.07072254008221535
QVCGGQPWV	9	Unmodified	_QVCGGQPWV_					0	0	0		nc|ENSG00000188662|P60008|H1-9P	nc|ENSG00000188662|P60008|H1-9P	nc|ENSG00000188662|P60008|H1-9P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2747497558594	2	487.231645	972.448736	-0.051272	-2.4981E-05	-4.1838	-0.0020385	-4.2351	-0.0020635	487.2294645102957	18.936	0.64056	18.814	18.655	19.295	-0.12177					17	12	2	0	0	0	0.024535	1	380	380		12.207	3.3845	1	26141			64710	18609	45578	45643	69960	69960					-0.03859014668512373
QVCGGQPWV	9	Unmodified	_QVCGGQPWV_					0	0	0		nc|ENSG00000188662|P60008|H1-9P	nc|ENSG00000188662|P60008|H1-9P	nc|ENSG00000188662|P60008|H1-9P	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.231645	972.448736	2.8545	0.0013908	-6.9871	-0.0034043	-4.1326	-0.0020135	487.2282024440721	18.916	0.63936	18.979	18.747	19.386	0.063307	0.14843	-0.0013941	NaN	7.1934	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38498			64711	18609	45578	45643							-0.03859014668512373
QVCWNTLPC	9	Unmodified	_QVCWNTLPC_					0	0	0		chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|88;chr15:53523322-53540662|353|34.83|0.17|7.69|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|93;chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|67;chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|61;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|356|3|anti-sense	chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|88	chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|88	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2381591796875	2	532.238612	1062.46267	-1.0388	-0.00055288	0.3392	0.00018054	-0.69959	-0.00037235	532.2385917317774	40.248	0.646	40.017	39.697	40.343	-0.23021					51	16	4	0	0	0	0.59099	1	3455	3455		53.351	0.26249	1	3673500			64712	295	45579	45644	69961	69961					-0.06606105231730908
QVDDIRSFLD	10	Unmodified	_QVDDIRSFLD_					0	0	0		nc|ENSG00000116675|O75061-3|DNAJC6;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	402.8614807128906	3	403.203299	1206.58807	0.81733	0.00032955	-3.2753	-0.0013206	-2.4579	-0.00099105	403.2019080013974	23.307	0.72449	23.307	22.757	23.482	0					38	16	3	0	0	0	0.03519	1	927	927		28.577	5.1988	1	179190			64713	3562	45580	45645	69962	69962					-0.006963985701304409
QVDKGLLW	8	Unmodified	_QVDKGLLW_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2;REV__nc|ENSG00000076356|O75051-2|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7718200683594	2	479.77146	957.528367	-0.045903	-2.2023E-05	0.40215	0.00019294	0.35625	0.00017092	479.771425577564	88.562	1.0437	88.43	88.032	89.076	-0.13135					64	24	4	0	0	0	0.56067	2	10798	10798;10822		79.939	0	1	1798700	+		64714	20567;36475	45581	45646	69963;69964	69963					0.047903752771503605
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3137817382812	2	567.313689	1132.61282	0.87889	0.00049861	-1.2185	-0.00069128	-0.33963	-0.00019267	567.3129674571978	67.855	1.2778	67.6	67.236	68.514	-0.25516					84	30	5	0	0	0	7.5011E-06	5	7820	7796;7808;7820;7832;7847		228.31	86.787	1	8097700			64715	4297	45582	45647	69965;69966;69967;69968;69969	69967					0.05182281303223135
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3134765625	2	567.313689	1132.61282	0.20428	0.00011589	-0.62106	-0.00035233	-0.41677	-0.00023644	567.3133266801091	67.848	1.2179	67.614	67.261	68.479	-0.23376					82	29	5	0	0	0	0.00020391	5	7834	7801;7810;7822;7834;7848		195.05	64.034	1	7233700			64716	4297	45582	45647	69970;69971;69972;69973;69974	69973					0.05182281303223135
QVDPLSALKY	10	Unmodified	_QVDPLSALKY_					0	0	0		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000498778.5_1_7:131151082-131172419:+|nuORF;ENST00000497746.1_1_7:131149041-131155790:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3134155273438	2	567.313689	1132.61282	-0.041923	-2.3783E-05	-0.40853	-0.00023176	-0.45045	-0.00025555	567.3134440771844	67.808	1.2317	67.57	67.159	68.39	-0.23814					78	29	4	0	0	0	0.00015509	5	7811	7787;7799;7811;7823;7837		199.89	93.208	1	7706500			64717	4297	45582	45647	69975;69976;69977;69978;69979	69977					0.05182281303223135
QVDSAIKII	9	Unmodified	_QVDSAIKII_					0	0	0			REV__nc|ENSG00000117500|Q9Y3A6-2|TMED5	REV__nc|ENSG00000117500|Q9Y3A6-2|TMED5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7762145996094	2	493.797675	985.580796	0.082149	4.0565E-05	-0.8074	-0.00039869	-0.72525	-0.00035813	493.7971065686364	52.95	0.50778	52.803	52.366	52.873	-0.14724					21	12	2	0	0	0	0.02435	1	5607	5607		51.335	0	1	184430	+		64718	36598	45583	45648	69980	69980					0.08742913620085346
QVEARIRL	8	Unmodified	_QVEARIRL_					0	0	0			REV__ENSG00000146828|ENST00000354161|SLC12A9	REV__ENSG00000146828|ENST00000354161|SLC12A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7720947265625	2	492.801083	983.587613	-0.6211	-0.00030608	-0.20495	-0.000101	-0.82604	-0.00040707	492.8008945459113	32.813	0.60138	32.82	32.553	33.154	0.0066223					36	15	3	0	0	0	0.027866	1	2323	2323		33.516	0	1	492180	+		64719	24512	45584	45649	69981	69981					0.09516271291306566
QVEFTGPAVI	10	Unmodified	_QVEFTGPAVI_					0	0	0			REV__ENSG00000143621|ENST00000361891|ILF2	REV__ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3052368164062	2	530.787307	1059.56006	0.10366	5.5023E-05	1.8377	0.00097543	1.9414	0.0010304	530.7881268949044	59.173	0.62902	59.259	59.026	59.655	0.085682					25	16	2	0	0	0	0.03519	1	6630	6630		60.118	22.307	1	361770	+		64720	24266	45585	45650	69982	69982					0.03266323240427482
QVEGGQLLVM	10	Unmodified	_QVEGGQLLVM_					0	0	0			REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3046875	2	537.286617	1072.55868	-0.19516	-0.00010486	-0.94521	-0.00050785	-1.1404	-0.00061271	537.2879418933949	69.104	0.68581	68.811	68.48	69.166	-0.29267					35	17	3	0	0	0	0.03519	1	8275	8275		36.318	2.1451	1	377910	+		64721	36449	45586	45651	69983	69983					0.02530365880033969
QVEKAMGNEM	10	Unmodified	_QVEKAMGNEM_					0	0	0		ENSG00000121289|ENST00000305768|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89	ENSG00000121289|ENST00000305768|CEP89	ENSG00000121289|ENST00000305768|CEP89	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.8111572265625	2	568.757366	1135.50018	-0.51349	-0.00029205	1.1455	0.00065152	0.63202	0.00035947	568.7574733626941	56.275	0.23709	56.059	55.961	56.198	-0.21551					9	5	2	0	0	0	0.03519	1	6079	6079		59.931	21.125	1	88761			64722	3860	45587	45652	69984	69984					-0.06215058756765757
QVELLPLLD	9	Unmodified	_QVELLPLLD_					0	0	0			REV__nc|ENSG00000156042|Q5T0N1-3|CFAP70	REV__nc|ENSG00000156042|Q5T0N1-3|CFAP70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8214721679688	2	520.305332	1038.59611	-0.84987	-0.00044219	1.7668	0.00091928	0.91693	0.00047709	520.3064288678361	81.67	0.73193	81.67	81.258	81.99	0					37	15	4	0	0	0	0.024292	1	10186	10186		58.782	5.4305	1	340970	+		64723	33772	45588	45653	69985	69985					0.07835780417281057
QVELLVCRA	9	Unmodified	_QVELLVCRA_					0	0	0			REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3120727539062	2	515.789327	1029.5641	0.2984	0.00015391	-0.49356	-0.00025457	-0.19516	-0.00010066	515.7889534059121	17.868	0.71909	17.726	17.325	18.044	-0.14278					19	14	2	0	0	0	0.024477	1	211	211		35.618	11.416	1	89006	+		64724	25620	45589	45654	69986	69986					0.050500894624974535
QVEMEQRL	8	Unmodified	_QVEMEQRL_					0	0	0			REV__ENSG00000104320|ENST00000265433|NBN	REV__ENSG00000104320|ENST00000265433|NBN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.27734375	2	516.760766	1031.50698	-1.0073	-0.00052054	-2.2517	-0.0011636	-3.259	-0.0016841	516.7594166464321	27.889	0.72462	27.971	27.646	28.371	0.081291					39	17	4	0	0	0	0.027866	1	1568	1568		38.806	25.847	1	640710	+		64725	21432	45590	45655	69987	69987					-0.007513778138672933
QVEQKQLVL	9	Unmodified	_QVEQKQLVL_					0	0	0			REV__ENST00000475185.5_1_18:20877560-20877677:-|nuORF	REV__ENST00000475185.5_1_18:20877560-20877677:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8233032226562	2	542.821681	1083.62881	0.10581	5.7437E-05	3.2796	0.0017802	3.3854	0.0018377	542.8234352971284	101.74	1.4688	101.61	101.31	102.78	-0.13156					94	34	4	0	0	0	0.77768	1	12688	12688		40.778	0.20554	1	4002000	+		64726	33288	45591	45656	69988	69988					0.09033987540146882
QVERFETVG	9	Unmodified	_QVERFETVG_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;nc|ENSG00000134352|P40189-3|IL6ST	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7818603515625	2	532.772188	1063.52982	-1.1114	-0.00059215	-3.9119	-0.0020842	-5.0234	-0.0026763	532.7713233265387	45.819	0.21154	45.667	45.611	45.823	-0.15156					12	5	4	0	0	0	0.02435	1	4483	4483		51.335	5.3835	1	3070000			64727	4788	45592	45657	69989	69989					0.0005996457523451681
QVERGKIKT	9	Unmodified	_QVERGKIKT_					0	0	0		ENST00000359359.6_3_6:36891226-36891394:+|nuORF	ENST00000359359.6_3_6:36891226-36891394:+|nuORF	ENST00000359359.6_3_6:36891226-36891394:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.298095703125	2	529.819473	1057.62439	-0.75875	-0.000402	3.2651	0.0017299	2.5063	0.0013279	529.8207403560601	52.172	0.52482	52.172	51.906	52.431	0					34	13	3	0	0	0	0.023239	1	5563	5563		54.776	0	1	565340			64728	12736	45593	45658	69990	69990					0.09788523117254044
QVESFIRKKL	10	Unmodified	_QVESFIRKKL_					0	0	0		nc|ENSG00000114805|Q4KWH8-2|PLCH1;PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.3762817382812	2	624.377155	1246.73976	-0.033284	-2.0782E-05	4.2066	0.0026265	4.1733	0.0026057	624.3795088411415	100.6	0.55309	100.6	100.31	100.86	0					31	12	3	0	0	0	1.089	1	12856	12856		34.173	0	1	835050			64729	3386	45594	45659	69991	69991					0.12625627248235105
QVESGPGGIP	10	Unmodified	_QVESGPGGIP_					0	0	0			REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF	REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2559814453125	2	470.740357	939.46616	-0.69259	-0.00032603	0.84347	0.00039706	0.15088	7.1025E-05	470.74051757103314	44.837	0.682	44.688	44.256	44.938	-0.1488					28	19	2	0	0	0	0.03519	1	4288	4288		39.253	19.893	1	245390	+		64730	34630	45595	45660	69992	69992					-0.005993958618319084
QVETIRNL	8	Unmodified	_QVETIRNL_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;ENST00000590806.5_1_19:10922561-10941720:+|nuORF;ENST00000593203.1_1_19:10934344-10943016:+|nuORF;ENST00000441149.6_1_9:131010813-131013220:+|nuORF;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000079805|P50570-3|DNM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7732849121094	2	486.777274	971.539994	0.74833	0.00036427	1.3534	0.0006588	2.1017	0.0010231	486.77763341125035	85.67	0.59175	85.521	85.285	85.877	-0.14967					23	13	2	0	0	0	0.027866	1	10389	10389		18.324	0	1	102970			64731	1675;10073	45596	45661	69993	69993					0.053085723004642205
QVEVMAVQPI	10	Unmodified	_QVEVMAVQPI_					0	0	0			REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF	REV__ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3045654296875	2	557.302267	1112.58998	0.2355	0.00013125	4.1367	0.0023054	4.3722	0.0024366	557.3044354908918	21.195	0.92703	21.004	20.735	21.662	-0.19072					46	18	3	0	0	0	0.96822	1	641	641		49.536	3.0793	1	451370	+		64732	35293	45597	45662	69994	69994					0.03818938914105274
QVFCFCQF	8	Unmodified	_QVFCFCQF_					0	0	0		ENST00000541795.1_1_11:73441692-73471680:-|nuORF	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	ENST00000541795.1_1_11:73441692-73471680:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2873229980469	2	511.217149	1020.41974	0.2527	0.00012919	-4.4814	-0.0022909	-4.2287	-0.0021618	511.21459516454473	58.637	0.5456	58.728	58.486	59.032	0.091217					20	14	2	0	0	0	0.027866	1	6560	6560		35.201	5.3592	1	199630			64733	16444	45598	45663	69995	69995					-0.08964875289154861
QVFDFLGY	8	Unmodified	_QVFDFLGY_					0	0	0		ENSG00000101198|ENST00000370316|NKAIN4	ENSG00000101198|ENST00000370316|NKAIN4	ENSG00000101198|ENST00000370316|NKAIN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.73919677734375	2	494.742368	987.470183	-0.25034	-0.00012385	-4.0212	-0.0019895	-4.2716	-0.0021133	494.7402494508613	53.547	1.4293	53.35	52.897	54.327	-0.19739					102	40	4	0	0	0	0.71833	1	5622	5622		65.803	7.9919	1	5583700			64734	2293	45599	45664	69996	69996					-0.024053063681321873
QVFHNFID	8	Unmodified	_QVFHNFID_					0	0	0			REV__nc|ENSG00000157077|O95405-2|ZFYVE9	REV__nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2739562988281	2	510.250892	1018.48723	-0.15838	-8.0816E-05	4.3543	0.0022218	4.1959	0.002141	510.25271876647344	90.577	0.50578	90.56	90.317	90.823	-0.016716					24	11	3	0	0	0	0.027866	1	11445	11445		42.474	12.633	1	163280	+		64735	25109	45600	45665	69997	69997					-0.021273857623441472
QVFKGPGPQE	10	Unmodified	_QVFKGPGPQE_					0	0	0		ENST00000430575.1_2_Y:2709965-2710264:+|nuORF	ENST00000430575.1_2_Y:2709965-2710264:+|nuORF	ENST00000430575.1_2_Y:2709965-2710264:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.287109375	2	543.782556	1085.55056	4.5537	0.0024762	-0.32725	-0.00017795	4.2265	0.0022983	543.7815692796459	16.538	0.37453	16.595	16.382	16.757	0.057352					26	14	3	0	0	0	1.1329	1	75	75		27.882	3.3631	1	24858			64736	14175	45601	45666	69998	69998					0.01120554954900399
QVFKTKIEL	9	Unmodified	_QVFKTKIEL_					0	0	0		ENST00000374234.1_1_9:115449830-115480332:-|nuORF	ENST00000374234.1_1_9:115449830-115480332:-|nuORF	ENST00000374234.1_1_9:115449830-115480332:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3322143554688	2	553.334424	1104.6543	-0.20591	-0.00011394	-3.4089	-0.0018862	-3.6148	-0.0020002	553.3323900913857	95.407	1.2671	95.407	95.007	96.274	0					99	29	5	0	0	0	0.72494	1	12171	12171		44.377	3.8046	1	4511400			64737	13104	45602	45667	69999	69999					0.10615462062560255
QVFKTKIEL	9	Unmodified	_QVFKTKIEL_					0	0	0		ENST00000374234.1_1_9:115449830-115480332:-|nuORF	ENST00000374234.1_1_9:115449830-115480332:-|nuORF	ENST00000374234.1_1_9:115449830-115480332:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.3321533203125	2	553.334424	1104.6543	0.24251	0.00013419	-3.8038	-0.0021048	-3.5613	-0.0019706	553.3321684369349	95.389	1.2262	95.393	95.009	96.235	0.0041199					91	28	4	0	0	0	0.80735	1	12107	12107		38.754	3.1353	1	4195000			64738	13104	45602	45667	70000	70000					0.10615462062560255
QVFNQIVK	8	Unmodified	_QVFNQIVK_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000489065.1_1_2:224866320-224903835:-|nuORF	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7681579589844	2	488.284734	974.554916	-0.615	-0.00030029	3.0428	0.0014857	2.4278	0.0011854	488.2862360368754	37.461	0.45721	37.398	37.232	37.69	-0.063385					19	12	2	0	0	0	0.027866	1	3039	3039		17.365	0	1	855930			64739	4951	45603	45668	70001	70001					0.06662064168460802
QVFPHTEYN	9	Unmodified	_QVFPHTEYN_					0	0	0			REV__AGO3|p.D392H|1|0.07|ENSG00000126070|chr1:36013654-36013654|G/C|missense_variant	REV__AGO3|p.D392H|1|0.07|ENSG00000126070|chr1:36013654-36013654|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.7637939453125	2	567.764363	1133.51417	-0.61564	-0.00034954	-0.094306	-5.3543E-05	-0.70995	-0.00040308	567.7641842212655	20.879	0.66987	20.774	20.424	21.094	-0.10477					40	13	4	0	0	0	0.89441	1	583	583		32.812	0.85756	1	543240	+		64740	19086	45604	45669	70002	70002					-0.0472432194180783
QVFQQKTAR	9	Unmodified	_QVFQQKTAR_					0	0	0		nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1;nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8294677734375	2	553.309272	1104.60399	-0.70001	-0.00038732	4.0154	0.0022217	3.3154	0.0018344	553.3093125319236	49.01	0.46515	48.857	48.54	49.006	-0.15277					12	12	2	0	0	0	0.024506	1	5035	5035		30.504	0	1	197680			64741	6315	45605	45670	70003	70003					0.055873524574280964
QVFRAKCMFPK	11	Unmodified	_QVFRAKCMFPK_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.24078369140625	3	452.242266	1353.70497	1.2897	0.00058324	-4.1429	-0.0018736	-2.8532	-0.0012903	452.24041202892903	17.936	0.79315	17.782	17.308	18.101	-0.15403					39	15	4	0	0	0	1.0592	1	253	253		22.562	0.78116	1	157550			64742	9775	45606	45671	70004	70004					0.04226344844255436
QVFRAKCMFPK	11	Unmodified	_QVFRAKCMFPK_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	452.242266	1353.70497	3.8272	0.0017308	-6.0243	-0.0027244	-2.1971	-0.0009936	452.23971215984284	17.672	0.24738	17.672	17.498	17.746	0	-0.055186	-0.0018333	NaN	22.562	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15550			64743	9775	45606	45671							0.04226344844255436
QVFRQCWGE	9	Unmodified	_QVFRQCWGE_					0	0	0		ENST00000502875.1_1_4:141563595-141563988:-|nuORF	ENST00000502875.1_1_4:141563595-141563988:-|nuORF	ENST00000502875.1_1_4:141563595-141563988:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	577.2981567382812	2	576.766383	1151.51821	-1.2873	-0.00074246	3.4926	0.0020144	2.2053	0.0012719	576.7670058293018	92.821	0.47137	92.821	92.622	93.093	0					17	10	2	0	0	0	0.024506	1	11775	11775		30.504	11.4	1	51185			64744	15677	45607	45672	70005	70005					-0.05148555719756587
QVFRVLVV	8	Unmodified	_QVFRVLVV_					0	0	0		chr14:50921067-50923954|357|12.34|0.58|4.42|-|0|PYGL,None|1	chr14:50921067-50923954|357|12.34|0.58|4.42|-|0|PYGL,None|1	chr14:50921067-50923954|357|12.34|0.58|4.42|-|0|PYGL,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2922668457031	2	480.30547	958.596387	0.0089306	4.2894E-06	0.80937	0.00038874	0.8183	0.00039303	480.30590961801965	56.159	0.57167	55.943	55.702	56.274	-0.21607					27	14	3	0	0	0	0.027866	1	6099	6099		37.028	11.578	1	648100			64745	342	45608	45673	70006	70006					0.11543244927804608
QVFVERDI	8	Unmodified	_QVFVERDI_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.2713317871094	2	503.271824	1004.5291	0.15375	7.738E-05	-0.23833	-0.00011994	-0.084572	-4.2563E-05	503.27164364531114	57.308	1.1969	57.143	56.458	57.655	-0.16531					78	32	3	0	0	0	0.95514	1	6436	6436		44.377	2.0391	1	8447400			64746	2069	45609	45674	70007	70007					0.027011699261720423
QVFVLKEGV	9	Unmodified	_QVFVLKEGV_					0	0	0		ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.274169921875	2	509.800217	1017.58588	0.20168	0.00010282	-1.8244	-0.00093008	-1.6227	-0.00082726	509.7990927609127	90.907	0.49387	90.768	90.449	90.943	-0.13942					16	11	2	0	0	0	0.024427	1	11102	11102		42.396	5.237	1	171410			64747	10793	45610	45675	70008	70008					0.07779217482709555
QVFVLSEAK	9	Unmodified	_QVFVLSEAK_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2738037109375	2	510.78985	1019.56515	-0.65194	-0.000333	0.82081	0.00041926	0.16887	8.6257E-05	510.7897178740026	89.585	1.4073	89.585	89.27	90.678	0					44	33	2	0	0	0	0.024495	1	11444	11444		42.396	11.892	1	133780	+	+	64748	19530	45611	45676	70009	70009					0.05614627103034309
QVFWNEVDDVP	11	Unmodified	_QVFWNEVDDVP_					0	0	0		UNC93B1|p.P119Lfs*68|1|0.38|ENSG00000110057|chr11:68003042-68003058|GAGCAGGGCGGCGATGG/-|frameshift_variant	UNC93B1|p.P119Lfs*68|1|0.38|ENSG00000110057|chr11:68003042-68003058|GAGCAGGGCGGCGATGG/-|frameshift_variant	UNC93B1|p.P119Lfs*68|1|0.38|ENSG00000110057|chr11:68003042-68003058|GAGCAGGGCGGCGATGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7792053222656	3	449.878704	1346.61428	-0.7322	-0.0003294	3.6974	0.0016634	2.9652	0.001334	450.21468035676884	30.395	0.71281	30.217	29.697	30.41	-0.17817					21	16	2	0	0	0	0.024727	1	1959	1959		29.551	0	1	40792			64749	38130	45612	45677	70010	70010					-0.04516129398666635
QVGADPWAID	10	Unmodified	_QVGADPWAID_					0	0	0		USH2A|p.S633W|1|0.22|ENSG00000042781|chr1:216289353-216289353|G/C|missense_variant	USH2A|p.S633W|1|0.22|ENSG00000042781|chr1:216289353-216289353|G/C|missense_variant	USH2A|p.S633W|1|0.22|ENSG00000042781|chr1:216289353-216289353|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7994384765625	2	536.258914	1070.50327	-0.22284	-0.0001195	-0.73582	-0.00039459	-0.95866	-0.00051409	536.2579150596769	49.748	0.59417	49.567	49.307	49.901	-0.18071					29	15	3	0	0	0	0.03519	1	5058	5058		39.253	10.083	1	337200			64750	38132	45613	45678	70011	70011					-0.02915724316108026
QVGAQAVNL	9	Unmodified	_QVGAQAVNL_					0	0	0			REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|17|2|sense	REV__SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|17|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7667236328125	2	450.250892	898.48723	-0.52071	-0.00023445	0.69788	0.00031422	0.17717	7.9771E-05	450.2509562236618	35.39	0.5395	35.203	34.948	35.488	-0.18675					32	13	3	0	0	0	0.024205	1	2631	2631		35.618	0	1	1001300	+		64751	19311	45614	45679	70012	70012					0.03392614237657199
QVGDEPNN	8	Unmodified	_QVGDEPNN_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7747802734375	2	436.690864	871.367175	-0.34453	-0.00015045	-3.3292	-0.0014538	-3.6737	-0.0016043	436.68942596781744	89.973	0.24077	89.973	89.774	90.015	0					7	5	2	0	0	0	0.027866	1	11339	11339		19.997	0	1	62749	+		64752	21057	45615	45680	70013	70013					-0.07365418826759651
QVGFQKILT	9	Unmodified	_QVGFQKILT_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7816162109375	2	517.305667	1032.59678	-0.53591	-0.00027723	0.3689	0.00019083	-0.16702	-8.6399E-05	517.8076014511452	42.006	0.44019	42.032	41.746	42.186	0.026016					30	12	3	0	0	0	0.024457	1	3761	3761		21.96	0	1	241640			64753	18574	45616	45681	70014	70014					0.08178619856994374
QVGFYNGVE	9	Unmodified	_QVGFYNGVE_					0	0	0			REV__ENSG00000102678|ENST00000382353|FGF9	REV__ENSG00000102678|ENST00000382353|FGF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.83978271484375	2	506.740357	1011.46616	-0.28483	-0.00014433	1.2454	0.00063107	0.96053	0.00048674	507.24274051889165	55.042	0.10917	54.892	54.82	54.929	-0.15036					4	2	2	0	0	0	0.024427	1	6029	6029		26.693	0	1	30958	+		64754	21320	45617	45682	70015	70015					-0.03911395861860001
QVGHFLVSGL	10	Unmodified	_QVGHFLVSGL_					0	0	0			REV__ENST00000488484.1_1_22:20109998-20110178:+|nuORF	REV__ENST00000488484.1_1_22:20109998-20110178:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7742309570312	2	528.795466	1055.57638	-0.73678	-0.00038961	-1.3132	-0.00069443	-2.05	-0.001084	528.7950185058015	32.174	0.51016	32.186	31.902	32.413	0.011799					36	12	4	0	0	0	0.03519	1	2181	2181		99.375	9.0051	1	354480	+		64755	33646	45618	45683	70016	70016					0.0508144919717779
QVGLIVPSL	9	Unmodified	_QVGLIVPSL_					0	0	0			REV__chr2:113058743-113059412|455|21.6|0.57|5.24|+|ENST00000346807|IL36RN,IL36RN	REV__chr2:113058743-113059412|455|21.6|0.57|5.24|+|ENST00000346807|IL36RN,IL36RN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2785949707031	2	463.289485	924.564418	-0.37851	-0.00017536	1.3234	0.00061313	0.94493	0.00043777	463.28990850958036	51.289	0.92475	51.376	50.964	51.889	0.087006					35	25	2	0	0	0	0.024457	1	5316	5316		29.15	6.1071	1	346360	+		64756	19400	45619	45684	70017	70017					0.09911832453997249
QVGLQLGH	8	Unmodified	_QVGLQLGH_					0	0	0			REV__ENSG00000105707|ENST00000672452|HPN	REV__ENSG00000105707|ENST00000672452|HPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77496337890625	2	426.240327	850.466101	-0.61614	-0.00026262	-4.4269	-0.0018869	-5.043	-0.0021495	426.23921844777965	43.467	0.18402	43.328	43.174	43.358	-0.13929					6	4	2	0	0	0	0.027866	1	4049	4049		35.201	0	1	31197	+		64757	21558	45620	45685	70018	70018					0.03488648928816929
QVGPALAILL	10	Unmodified	_QVGPALAILL_					0	0	0		ENSG00000221989|ENST00000408979|OR2A2	ENSG00000221989|ENST00000408979|OR2A2	ENSG00000221989|ENST00000408979|OR2A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2562561035156	2	497.81841	993.622267	-0.61021	-0.00030377	1.4295	0.00071165	0.81934	0.00040788	497.8186959265038	80.357	0.54945	80.379	80.104	80.654	0.021439					16	12	2	0	0	0	0.03519	1	9890	9890		37.159	11.709	1	108050			64758	10633	45621	45686	70019	70019					0.12520094379431157
QVGPTREL	8	Unmodified	_QVGPTREL_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;EIF2B4|p.E79Q|1|0.18|ENSG00000115211|chr2:27369189-27369189|C/G|missense_variant;ENST00000475582.5_1_2:27591484-27592470:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.25079345703125	2	450.250892	898.48723	-0.5212	-0.00023467	0.72872	0.00032811	0.20753	9.3438E-05	450.2510896183528	35.51	1.1729	35.51	35.056	36.229	0					83	31	4	0	0	0	0.68164	1	2743	2743		68.787	0.30212	1	2425600			64759	3418	45622	45687	70020	70020					0.03392614237657199
QVGPTREL	8	Unmodified	_QVGPTREL_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;EIF2B4|p.E79Q|1|0.18|ENSG00000115211|chr2:27369189-27369189|C/G|missense_variant;ENST00000475582.5_1_2:27591484-27592470:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2513122558594	2	450.250892	898.48723	-0.82793	-0.00037277	1.2882	0.00058002	0.46029	0.00020724	450.251253886249	35.326	0.98486	35.305	34.866	35.851	-0.021763					81	25	5	0	0	0	0.6536	1	2716	2716		71.296	0	1	2248200			64760	3418	45622	45687	70021	70021					0.03392614237657199
QVGRWGAETNW	11	Unmodified	_QVGRWGAETNW_					0	0	0			REV__ENST00000491327.5_1_6:31938898-31939355:-|nuORF	REV__ENST00000491327.5_1_6:31938898-31939355:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77203369140625	3	435.210788	1302.61053	-0.69785	-0.00030371	2.5599	0.0011141	1.862	0.00081037	435.2128464554979	25.428	0.23153	25.393	25.201	25.432	-0.034395					7	5	2	0	0	0	0.024792	1	1195	1195		24.232	0	1	31862	+		64761	33724	45623	45688	70022	70022					-0.028667543818755803
QVGTVARVL	9	Unmodified	_QVGTVARVL_					0	0	0			REV__ENST00000466374.1_1_22:38453534-38463917:+|nuORF	REV__ENST00000466374.1_1_22:38453534-38463917:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7904052734375	2	471.790184	941.565815	-0.2047	-9.6575E-05	-0.54393	-0.00025662	-0.74863	-0.0003532	471.7899415927755	47.76	1.308	47.819	47.554	48.862	0.059097					114	37	5	0	0	0	0.28753	1	4751	4751		77.318	5.4401	1	46020000	+		64762	33036	45624	45689	70023	70023					0.0926946654275298
QVGTVGVPL	9	Unmodified	_QVGTVGVPL_					0	0	0		ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7801513671875	2	435.258185	868.501818	-0.42389	-0.0001845	0.61408	0.00026728	0.19019	8.2782E-05	435.25825151474487	43.45	0.86881	43.224	42.912	43.781	-0.22597					51	23	3	0	0	0	0.023596	1	4003	4003		53.351	14.545	1	2975500			64763	14608	45625	45690	70024	70024					0.06230686385822537
QVGTVGVPL	9	Unmodified	_QVGTVGVPL_					0	0	0		ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	ENST00000457270.5_1_22:22311488-22312070:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.258185	868.501818	-0.45679	-0.00019882	1.1028	0.00047999	0.64598	0.00028117	435.25843827061885	43.406	0.32954	43.267	43.21	43.54	-0.13929	0.025538	0.00047797	NaN	53.351	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81861			64764	14608	45625	45690							0.06230686385822537
QVHDKEVL	8	Unmodified	_QVHDKEVL_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2;ENST00000491005.5_1_1:220324899-220327342:-|nuORF	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7896728515625	2	484.263999	966.513445	-0.33116	-0.00016037	0.34837	0.0001687	0.017208	8.3331E-06	484.26341728469936	47.816	0.38509	47.663	47.441	47.827	-0.15301					18	11	2	0	0	0	0.027866	1	4786	4786		37.159	0	1	212820			64765	3706	45626	45691	70025	70025					0.028848834091377284
QVHEVRLSC	9	Unmodified	_QVHEVRLSC_					0	0	0			REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	REV__nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7732543945312	2	535.774208	1069.53386	-0.74284	-0.00039799	-1.3267	-0.00071083	-2.0696	-0.0011088	535.7733998428846	41.747	0.8009	41.519	41.006	41.807	-0.2278					52	20	4	0	0	0	0.56934	1	3701	3701		54.776	5.3348	1	3287400	+		64766	27667	45627	45692	70026	70026					0.0018773079730181053
QVHGVTSFV	9	Unmodified	_QVHGVTSFV_					0	0	0		ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A	ENSG00000219073|ENST00000337107|CELA3B	ENSG00000219073|ENST00000337107|CELA3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2409362792969	2	487.258717	972.50288	-0.61411	-0.00029923	0.81295	0.00039612	0.19884	9.6888E-05	487.25921259138084	52.38	0.70718	52.472	51.93	52.638	0.091942					30	17	3	0	0	0	0.024477	1	5522	5522		20.947	0	1	264040			64767	5589	45628	45693	70027	70027					0.015529007547229412
QVHQLAQLI	9	Unmodified	_QVHQLAQLI_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2213134765625	2	525.308741	1048.60293	-1.2253	-0.00064365	-0.45001	-0.00023639	-1.6753	-0.00088005	525.3084432474893	28.467	0.32079	28.222	28.001	28.322	-0.24524					10	7	2	0	0	0	0.024436	1	1634	1634		47.916	17.598	1	49521	+		64768	24267	45629	45694	70028	70028					0.08057138088520333
QVHQLYDD	8	Unmodified	_QVHQLYDD_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.8022766113281	2	509.235439	1016.45632	-0.91251	-0.00046468	0.050684	2.581E-05	-0.86183	-0.00043887	509.2353788337937	62.906	0.54492	62.906	62.651	63.196	0					22	13	2	0	0	0	0.027866	1	7321	7321		18.324	0	1	310710			64769	3443	45630	45695	70029	70029					-0.05124583867234378
QVHQVLPLH	9	Unmodified	_QVHQVLPLH_					0	0	0			REV__ENST00000462984.1_1_X:70346235-70347318:+|nuORF	REV__ENST00000462984.1_1_X:70346235-70347318:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.812255859375	2	535.808908	1069.60326	2.3194	0.0012427	4.4883	0.0024049	6.8077	0.0036476	535.8110893122501	19.205	0.59289	19.271	19.044	19.637	0.066193					25	11	3	0	0	0	0.78069	1	341	341		40.573	7.7602	1	171430	+		64770	27689	45631	45696	70030	70030					0.07124557808378995
QVHRITGKTVS	11	Unmodified	_QVHRITGKTVS_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1864013671875	3	409.238566	1224.69387	-0.5044	-0.00020642	0.60659	0.00024824	0.10219	4.182E-05	409.23871197568	26.971	0.70396	26.814	26.314	27.018	-0.15664					29	16	3	0	0	0	0.024756	1	1428	1428		25.892	0.82393	1	106360			64771	4506	45632	45697	70031	70031					0.09050982065969038
QVHRITGKTVS	11	Unmodified	_QVHRITGKTVS_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	409.238566	1224.69387	0.80968	0.00033135	-0.015917	-6.514E-06	0.79376	0.00032484	409.2384743887079	26.815	0.29292	26.815	26.658	26.951	0	0.079523	-0.00046358	NaN	25.892	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27460			64772	4506	45632	45697							0.09050982065969038
QVHRITGKTVS	11	Unmodified	_QVHRITGKTVS_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	409.238566	1224.69387	-0.32952	-0.00013485	0.39609	0.0001621	0.066572	2.7244E-05	409.23867817556396	26.94	0.692	26.697	26.262	26.954	-0.24217	-0.038124	4.2255E-05	NaN	25.892	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131410			64773	4506	45632	45697							0.09050982065969038
QVHRITGKTVS	11	Unmodified	_QVHRITGKTVS_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	409.238566	1224.69387	0.080169	3.2808E-05	0.14854	6.0788E-05	0.22871	9.3596E-05	409.2385214809283	26.784	0.66729	26.616	26.224	26.892	-0.16816	-0.11984	-0.00026167	NaN	25.892	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156650			64774	4506	45632	45697							0.09050982065969038
QVIAIANPT	9	Unmodified	_QVIAIANPT_					0	0	0			REV__ENSG00000184371|ENST00000329608|CSF1	REV__ENSG00000184371|ENST00000329608|CSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7978515625	2	463.768917	925.523281	1.0162	0.00047127	-0.60052	-0.0002785	0.41565	0.00019276	463.7685193763402	58.865	0.94592	58.951	58.555	59.501	0.085686					46	25	3	0	0	0	0.024374	1	6574	6574		19.104	0.84144	1	1134400	+		64775	27664	45633	45698	70032	70032					0.057540714145034144
QVIAIANPT	9	Unmodified	_QVIAIANPT_					0	0	0			REV__ENSG00000184371|ENST00000329608|CSF1	REV__ENSG00000184371|ENST00000329608|CSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.768917	925.523281	-0.094773	-4.3953E-05	-0.036248	-1.6811E-05	-0.13102	-6.0763E-05	463.7687150601137	59.156	0.5218	58.969	58.702	59.224	-0.18795	-0.0039103	0.00072354	NaN	19.104	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249910	+		64776	27664	45633	45698							0.057540714145034144
QVIAIANPT	9	Unmodified	_QVIAIANPT_					0	0	0			REV__ENSG00000184371|ENST00000329608|CSF1	REV__ENSG00000184371|ENST00000329608|CSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.768917	925.523281	0.35867	0.00016634	-0.85175	-0.00039502	-0.49309	-0.00022868	463.7687005117869	59.056	0.4839	58.875	58.628	59.112	-0.18134	-0.097643	-3.2877E-05	NaN	19.104	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234160	+		64777	27664	45633	45698							0.057540714145034144
QVIHIICILS	10	Unmodified	_QVIHIICILS_					0	0	0		GDI1|p.R299H|1|0.07|ENSG00000203879|chrX:154441699-154441699|G/A|missense_variant	GDI1|p.R299H|1|0.07|ENSG00000203879|chrX:154441699-154441699|G/A|missense_variant	GDI1|p.R299H|1|0.07|ENSG00000203879|chrX:154441699-154441699|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.796875	2	569.836277	1137.658	-0.38689	-0.00022046	-3.9573	-0.002255	-4.3442	-0.0024755	569.8339402715314	45.013	0.23515	44.76	44.63	44.865	-0.25252					6	5	2	0	0	0	0.03519	1	4233	4233		42.396	15.703	1	92706			64778	17675	45634	45699	70033	70033					0.09467808564772895
QVIHNQMVC	9	Unmodified	_QVIHNQMVC_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3297729492188	2	536.257336	1070.50012	-0.76293	-0.00040913	-2.5831	-0.0013852	-3.346	-0.0017943	536.2558623826741	40.704	1.2257	40.569	39.873	41.099	-0.13553					74	32	3	0	0	0	0.024535	1	3474	3474		12.207	0	1	595530	+		64779	20205	45635	45700	70034	70034					-0.03231013966092178
QVIKPPEADA	10	Unmodified	_QVIKPPEADA_					0	0	0			REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	REV__DGKQ|p.R878Efs*24|1|0.26|ENSG00000145214|chr4:961144-961144|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.28857421875	2	534.290214	1066.56587	-0.18633	-9.9552E-05	-2.6173	-0.0013984	-2.8037	-0.001498	534.288661320841	18.31	0.68816	18.179	17.957	18.645	-0.13147					29	13	3	0	0	0	0.94316	1	261	261		51.193	1.7511	1	291720	+		64780	19669	45636	45701	70035	70035					0.03525421752101465
QVILTLQPT	9	Unmodified	_QVILTLQPT_					0	0	0		ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3196105957031	2	506.8055	1011.59645	-0.58142	-0.00029467	-0.15809	-8.012E-05	-0.73951	-0.00037479	506.80510724919105	52.82	0.26097	52.82	52.75	53.011	0					10	6	2	0	0	0	0.024477	1	5690	5690		20.947	0	1	267190			64781	2919	45637	45702	70036	70036					0.09111200137124342
QVIQLLEE	8	Unmodified	_QVIQLLEE_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;nc|ENSG00000159433|Q9P2P6-2|STARD9;ENST00000564158.5_1_15:42867889-42955097:+|nuORF;nc|ENSG00000159433|Q9P2P6-3|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2715148925781	2	486.274032	970.533512	-0.99686	-0.00048475	-1.7525	-0.00085221	-2.7494	-0.001337	486.2731145576464	21.219	0.54145	21.219	20.85	21.392	0					32	10	4	0	0	0	0.87148	1	649	649		53.351	0	1	1033700			64782	6747	45638	45703	70037	70037					0.0470663434908829
QVIQVDRDTIL	11	Unmodified	_QVIQVDRDTIL_					0	0	0		nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2	nc|ENSG00000168067|Q12851-2|MAP4K2	nc|ENSG00000168067|Q12851-2|MAP4K2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.9128112792969	3	433.913748	1298.71942	0.59914	0.00025997	-2.7126	-0.001177	-2.1134	-0.00091705	433.9125825213623	21.01	1.6537	21.079	20.514	22.167	0.068918					79	33	5	0	0	0	1.0648	1	562	562		21.032	1.7696	1	1031900			64783	7781	45639	45704	70038	70038					0.08200411797770357
QVIRLYQRRRW	11	Unmodified	_QVIRLYQRRRW_					0	0	0		nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.3095703125	3	525.311059	1572.91135	-0.81505	-0.00042815	-0.15564	-8.1761E-05	-0.97069	-0.00050991	525.3100585076984	103.86	1.5846	103.86	103.12	104.71	0					131	38	6	0	0	0	1.1077	1	13324	13324		9.2118	2.5522	1	375190			64784	9521	45640	45705	70039	70039					0.1478079705923392
QVITLLNEL	9	Unmodified	_QVITLLNEL_					0	0	0		nc|ENSG00000060971|P09110-2|ACAA1;ENSG00000060971|ENST00000333167|ACAA1;ENST00000469559.5_1_3:38167054-38167382:-|nuORF;ENST00000469600.1_1_3:38164540-38167382:-|nuORF;ENST00000411549.5_1_3:38164540-38167863:-|nuORF	nc|ENSG00000060971|P09110-2|ACAA1	nc|ENSG00000060971|P09110-2|ACAA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8125610351562	2	521.810782	1041.60701	-0.33508	-0.00017485	4.428	0.0023106	4.0929	0.0021357	521.8130217566711	41.917	1.8968	41.917	41.579	43.475	0					149	53	4	0	0	0	0.75397	1	3783	3783		42.396	0	1	7471500			64785	1241	45641	45706	70040	70040					0.0878718279154782
QVIVHKPLL	9	Unmodified	_QVIVHKPLL_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.839599609375	2	523.839677	1045.6648	-1.1143	-0.00058369	0.43483	0.00022778	-0.67943	-0.00035591	523.8398367821065	60.826	1.7866	60.826	60.33	62.117	0					118	47	5	0	0	0	0.22754	1	7041	7041		85.359	0	1	9760400	+		64786	31599	45642	45707	70041	70041					0.14379489507655308
QVIVHKPLL	9	Unmodified	_QVIVHKPLL_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.8384399414062	2	523.839677	1045.6648	-0.73125	-0.00038306	0.01917	1.0042E-05	-0.71208	-0.00037301	523.8396255251024	60.841	1.7114	60.912	60.384	62.096	0.071125					139	45	5	0	0	0	0.29104	1	6911	6911		76.847	2.8719	1	9151900	+		64787	31599	45642	45707	70042	70042					0.14379489507655308
QVIVIQIGF	9	Unmodified	_QVIVIQIGF_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2774963378906	2	508.810585	1015.60662	-0.45676	-0.0002324	-2.7803	-0.0014147	-3.2371	-0.0016471	508.8088088456956	35.676	0.39117	35.463	35.193	35.584	-0.21246					22	9	3	0	0	0	0.024412	1	2685	2685		24.203	5.8783	1	193900	+		64788	20367	45643	45708	70043	70043					0.09943807862384801
QVIVQDTCW	9	Unmodified	_QVIVQDTCW_					0	0	0			REV__nc|ENSG00000100170|P13866-2|SLC5A1;REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10;REV__ENSG00000117834|ENST00000438567|SLC5A9	REV__ENSG00000117834|ENST00000438567|SLC5A9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2651977539062	2	546.263142	1090.51173	-0.38931	-0.00021267	4.0017	0.002186	3.6123	0.0019733	546.265362993697	26.053	1.6161	25.885	25.7	27.317	-0.16816					110	41	4	0	0	0	0.77768	1	1369	1369		40.778	7.2626	1	25118000	+		64789	21060;24927;22375	45644	45709	70044	70044					-0.02990493671131844
QVIYYFKEKT	10	Unmodified	_QVIYYFKEKT_					0	0	0			REV__COLEC10|p.E156K|1|0.12|ENSG00000184374|chr8:119105823-119105823|G/A|missense_variant	REV__COLEC10|p.E156K|1|0.12|ENSG00000184374|chr8:119105823-119105823|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.73028564453125	3	440.239573	1317.69689	0.20878	9.1915E-05	2.0583	0.00090616	2.2671	0.00099807	440.24043660944596	34.203	0.5427	34.199	33.948	34.491	-0.0045624					20	13	2	0	0	0	0.03519	1	2555	2555		25.126	4.0938	1	285270	+		64790	19515	45645	45710	70045	70045					0.05074812400107476
QVKCITKHG	9	Unmodified	_QVKCITKHG_					0	0	0		ENSG00000173157|ENST00000389420|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3193359375	2	507.281669	1012.54878	-0.47899	-0.00024298	0.10694	5.4247E-05	-0.37205	-0.00018874	507.7831772360286	52.612	0.96242	52.612	52.049	53.011	0					50	24	3	0	0	0	0.024506	1	5701	5701		16.473	0	1	966120			64791	8345	45646	45711	70046	70046					0.04301222665299065
QVKDKLHNL	9	Unmodified	_QVKDKLHNL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8194580078125	2	547.819473	1093.62439	2.0768	0.0011377	-2.2389	-0.0012265	-0.16217	-8.8841E-05	547.8181419580111	19.334	0.44458	19.401	19.192	19.637	0.066195					21	8	3	0	0	0	0.45795	1	361	361		62.107	1.9892	1	96131	+		64792	23261	45647	45712	70047	70047					0.0813252311722863
QVKDKLHNL	9	Unmodified	_QVKDKLHNL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.819473	1093.62439	0.72293	0.00039604	-0.93961	-0.00051474	-0.21668	-0.0001187	547.818835399814	19.173	0.44276	19.173	18.972	19.414	0	-0.17732	-0.00015109	NaN	62.107	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105680	+		64793	23261	45647	45712							0.0813252311722863
QVKDKLHNL	9	Unmodified	_QVKDKLHNL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.819473	1093.62439	-0.65682	-0.00035982	0.31824	0.00017434	-0.33858	-0.00018548	547.8195063184962	19.348	0.49131	19.229	19.052	19.543	-0.11872	-0.12179	0.0012271	NaN	62.107	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104670	+		64794	23261	45647	45712							0.0813252311722863
QVKDKLHNL	9	Unmodified	_QVKDKLHNL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	547.819473	1093.62439	2.0768	0.0011377	-2.2389	-0.0012265	-0.16217	-8.8841E-05	547.8181419580111	19.334	0.44458	19.401	19.192	19.637	0.066195	0.0498	-0.0015747	NaN	62.107	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96131	+		64795	23261	45647	45712							0.0813252311722863
QVKDKLHNL	9	Unmodified	_QVKDKLHNL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.819473	1093.62439	0.045899	2.5144E-05	-0.33242	-0.00018211	-0.28652	-0.00015696	547.818958745696	19.566	0.29578	19.405	19.233	19.529	-0.16079	0.054654	0.00051417	NaN	62.107	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14092	+		64796	23261	45647	45712							0.0813252311722863
QVKDKLHNL	9	Unmodified	_QVKDKLHNL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	547.819473	1093.62439	0.77719	0.00042576	-0.63699	-0.00034895	0.1402	7.6806E-05	547.8186631604394	19.71	0.29831	19.509	19.305	19.603	-0.2001	0.15865	0.00018047	NaN	62.107	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20485	+		64797	23261	45647	45712							0.0813252311722863
QVKDKLHNL	9	Unmodified	_QVKDKLHNL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	547.819473	1093.62439	0.95709	0.00052431	-0.83631	-0.00045815	0.12078	6.6167E-05	547.8185500614628	19.62	0.29668	19.387	19.275	19.572	-0.23345	0.036001	-3.7909E-05	NaN	62.107	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17499	+		64798	23261	45647	45712							0.0813252311722863
QVKHKGQKAAI	11	Unmodified	_QVKHKGQKAAI_					0	0	0			REV__ENSG00000140521|ENST00000268124|POLG	REV__ENSG00000140521|ENST00000268124|POLG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3631591796875	2	604.367121	1206.71969	-1.0438	-0.00063086	0.55081	0.00033289	-0.49303	-0.00029797	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.0532	1	13274	13274		14.865	0	1	4517100	+		64799	24025	45648	45713	70048	70048					0.12459876308275852
QVKIKQRA	8	Unmodified	_QVKIKQRA_					0	0	0			REV__ENSG00000132554|ENST00000360863|RGS22	REV__ENSG00000132554|ENST00000360863|RGS22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79656982421875	2	485.811451	969.608348	-0.13765	-6.6874E-05	-4.4123	-0.0021436	-4.55	-0.0022104	485.8094139434941	59.227	0.59242	59.313	59.063	59.655	0.085682					27	15	3	0	0	0	0.027866	1	6695	6695		38.806	8.3025	1	356940	+		64800	23291	45649	45714	70049	70049					0.12232861670986495
QVKITIDG	8	Unmodified	_QVKITIDG_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7644348144531	2	437.255643	872.496732	-0.11035	-4.825E-05	0.79884	0.0003493	0.6885	0.00030105	437.2558032957545	19.968	0.52387	19.864	19.654	20.178	-0.10477					19	10	3	0	0	0	0.027866	1	497	497		25.45	0	1	51974	+		64801	26976	45650	45715	70050	70050					0.05538382523184282
QVKITIDG	8	Unmodified	_QVKITIDG_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.255643	872.496732	0.39864	0.00017431	-0.22348	-9.772E-05	0.17516	7.6589E-05	437.25537424515664	19.748	0.56448	19.748	19.414	19.979	0	-0.058078	-0.0006124	NaN	25.45	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64054	+		64802	26976	45650	45715							0.05538382523184282
QVKKLSPV	8	Unmodified	_QVKKLSPV_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2066955566406	2	449.789653	897.564752	0.58801	0.00026448	-0.4043	-0.00018185	0.18371	8.2632E-05	449.7893305750491	22.251	0.88352	22.062	21.769	22.653	-0.18894					33	18	3	0	0	0	0.027866	1	826	826		24.203	20.793	1	238380	+		64803	21813	45651	45716	70051	70051					0.11187252173840534
QVKKLSPV	8	Unmodified	_QVKKLSPV_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.789653	897.564752	-0.25478	-0.0001146	0.11259	5.0642E-05	-0.14219	-6.3957E-05	449.78956305036985	22.048	0.80211	22.048	21.723	22.525	0	-0.038149	-8.3559E-05	NaN	17.365	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227450	+		64804	21813	45651	45716							0.11187252173840534
QVKKLSPV	8	Unmodified	_QVKKLSPV_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	449.789653	897.564752	-0.14837	-6.6737E-05	0.023745	1.068E-05	-0.12463	-5.6057E-05	449.7895540855836	22.119	0.71354	22.043	21.745	22.458	-0.075296	-0.043165	-0.00016348	NaN	17.365	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199530	+		64805	21813	45651	45716							0.11187252173840534
QVKKLSPV	8	Unmodified	_QVKKLSPV_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	449.789653	897.564752	-0.99286	-0.00044658	0.97082	0.00043666	-0.022046	-9.9162E-06	449.7899153918628	21.949	0.77576	22.02	21.781	22.556	0.071487	-0.066255	0.00068848	NaN	17.365	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173210	+		64806	21813	45651	45716							0.11187252173840534
QVKLNNVLD	9	Unmodified	_QVKLNNVLD_					0	0	0		ENSG00000130477|ENST00000519716|UNC13A;ENST00000601528.1_1_19:17737440-17738785:-|nuORF	ENSG00000130477|ENST00000519716|UNC13A	ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7904052734375	2	521.798206	1041.58186	0.28796	0.00015026	3.4475	0.0017989	3.7354	0.0019491	521.7998438650652	84.398	1.1061	84.195	83.734	84.84	-0.20329					53	25	3	0	0	0	0.024405	1	10178	10178		27.882	0	1	540390			64807	4421	45652	45717	70052	70052					0.0627312798899311
QVKPEKVPRR	10	Unmodified	_QVKPEKVPRR_					0	0	0		nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1	nc|ENSG00000181191|Q8NG27-2|PJA1	nc|ENSG00000181191|Q8NG27-2|PJA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	619.870361328125	2	618.880396	1235.74624	0.43151	0.00026705	-2.9631	-0.0018338	-2.5315	-0.0015667	619.3792485802571	96.712	0.13354	96.576	96.479	96.613	-0.1367					4	2	2	0	0	0	0.03519	1	11944	11944		29.17	6.5904	1	16507			64808	9026	45653	45718	70053	70053					0.1377956519959298
QVKPGFLQF	9	Unmodified	_QVKPGFLQF_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2554321289062	2	532.300384	1062.58622	-0.68501	-0.00036463	-3.7643	-0.0020038	-4.4493	-0.0023684	532.2985051439111	52.178	0.87903	52.178	51.871	52.75	0					31	22	2	0	0	0	0.024457	1	5656	5656		37.159	14.117	1	3164600			64809	18899	45654	45719	70054	70054					0.05742637202547485
QVKPLPAPL	9	Unmodified	_QVKPLPAPL_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.8055419921875	2	481.805303	961.596052	0.23915	0.00011523	-0.52542	-0.00025315	-0.28627	-0.00013793	481.8048449052786	53.556	0.71012	53.556	53.232	53.942	0					46	19	3	0	0	0	0.20304	1	5801	5801		88.643	6.3378	1	2545600			64810	2699	45655	45720	70055	70055					0.11371825207925212
QVKQAFIN	8	Unmodified	_QVKQAFIN_					0	0	0		ENSG00000205330|ENST00000642104|OR6C1	ENSG00000205330|ENST00000642104|OR6C1	ENSG00000205330|ENST00000642104|OR6C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.27227783203125	2	474.269084	946.523616	0.963	0.00045672	2.7403	0.0012996	3.7033	0.0017564	474.27032537429324	17.571	0.67014	17.428	17.276	17.946	-0.14278					20	13	2	0	0	0	0.56067	1	172	172		79.939	3.1651	1	90009			64811	10419	45656	45721	70056	70056					0.04821491134373446
QVKQLSEV	8	Unmodified	_QVKQLSEV_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7947082519531	2	465.766374	929.518196	-0.30946	-0.00014414	0.76302	0.00035539	0.45356	0.00021125	465.7664547224211	33.663	0.80322	33.462	33.209	34.012	-0.20019					40	20	4	0	0	0	0.027866	1	2458	2458		33.516	0	1	1047000	+		64812	23615	45657	45722	70057	70057					0.05061767551910634
QVKSKAKKT	9	Unmodified	_QVKSKAKKT_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2916259765625	2	509.324391	1016.63423	-0.21948	-0.00011179	4	0.0020373	3.7806	0.0019255	509.32648160333855	58.743	0.43243	58.555	58.308	58.74	-0.18795					17	10	2	0	0	0	0.024541	1	6447	6447		19.104	0	1	238050			64813	8257	45658	45723	70058	70058					0.12657711122596993
QVKWVFAGIT	10	Unmodified	_QVKWVFAGIT_					0	0	0		ENSG00000162391|ENST00000302250|FAM151A;nc|ENSG00000162391|Q8WW52-2|FAM151A	ENSG00000162391|ENST00000302250|FAM151A	ENSG00000162391|ENST00000302250|FAM151A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.3115234375	2	574.826766	1147.63898	-0.038372	-2.2057E-05	-0.91849	-0.00052797	-0.95686	-0.00055003	574.8260269556034	42.63	0.48839	42.507	42.116	42.604	-0.12299					17	12	2	0	0	0	0.03519	1	3814	3814		19.104	6.2918	1	153680			64814	6935	45659	45724	70059	70059					0.07106595265372562
QVKYGYVT	8	Unmodified	_QVKYGYVT_					0	0	0			REV__nc|ENSG00000146839|Q9Y493-5|ZAN	REV__nc|ENSG00000146839|Q9Y493-5|ZAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.79461669921875	2	479.255643	956.496732	-0.50014	-0.0002397	3.7797	0.0018115	3.2796	0.0015718	479.25760682714014	64.829	0.44199	64.829	64.578	65.02	0					19	11	2	0	0	0	0.027866	1	7656	7656		33.516	14.156	1	127680	+		64815	24514	45660	45725	70060	70060					0.016743825231969822
QVLDMNDLR	9	Unmodified	_QVLDMNDLR_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.3030395507812	2	552.279323	1102.54409	-0.39912	-0.00022043	3.356	0.0018534	2.9569	0.001633	552.2811893901811	54.566	0.62635	54.416	54.084	54.711	-0.15036					22	17	2	0	0	0	0.024313	1	5890	5890		51.193	5.2204	1	165100			64816	7399	45661	45726	70061	70061					-0.003077062681541065
QVLDSYRNYA	10	Unmodified	_QVLDSYRNYA_					0	0	0		nc|ENSG00000149646|Q96M20-3|CNBD2;nc|ENSG00000149646|Q96M20-2|CNBD2;ENSG00000149646|ENST00000373973|CNBD2	nc|ENSG00000149646|Q96M20-3|CNBD2	nc|ENSG00000149646|Q96M20-3|CNBD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.88037109375	3	410.20341	1227.5884	1.0538	0.00043228	-2.9799	-0.0012224	-1.9261	-0.00079009	410.20227373246405	33.462	0.87791	33.519	33.176	34.054	0.056572					40	22	2	0	0	0	0.03519	1	2354	2354		24.232	6.3987	1	268970			64817	6112	45662	45727	70062	70062					-0.016289788502717784
QVLEECQNP	9	Unmodified	_QVLEECQNP_					0	0	0		ENSG00000091844|ENST00000206262|RGS17;ENST00000423358.2_1_13:41567164-41567443:-|nuORF	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2471313476562	2	530.242406	1058.47026	0.49792	0.00026402	-0.62235	-0.00033	-0.12443	-6.5977E-05	530.744373553965	59.253	0.16001	59.011	58.936	59.096	-0.24165					5	3	2	0	0	0	0.024466	1	6522	6522		31.53	0	1	128530			64818	1970	45663	45728	70063	70063					-0.05663674430456922
QVLEECVIN	9	Unmodified	_QVLEECVIN_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.839599609375	2	523.762975	1045.5114	-0.58982	-0.00030893	-2.6948	-0.0014114	-3.2846	-0.0017204	523.7614755007954	61.03	0.60803	61.03	60.845	61.453	0					26	15	2	0	0	0	0.023061	1	7041	7041		69.628	0	1	142720			64819	18349	45664	45729	70064	70064					-0.009539133909811426
QVLEKVVL	8	Unmodified	_QVLEKVVL_					0	0	0			REV__nc|ENSG00000158019|Q9NXR7-3|BABAM2;REV__nc|ENSG00000158019|Q9NXR7-1|BABAM2	REV__nc|ENSG00000158019|Q9NXR7-1|BABAM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.29620361328125	2	464.29731	926.580068	-1.2542	-0.00058234	1.2129	0.00056315	-0.04134	-1.9194E-05	464.29767860842486	65.527	0.74085	65.314	65.012	65.753	-0.21328					38	17	3	0	0	0	0.71063	1	7482	7482		66.429	0	1	1606800	+		64820	36818;36817	45665	45730	70065	70065					0.1138411897103424
QVLELEKLL	9	Unmodified	_QVLELEKLL_					0	0	0			REV__ENSG00000100949|ENST00000216840|RABGGTA	REV__ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.835205078125	2	542.834257	1083.65396	-0.82811	-0.00044953	1.6869	0.00091571	0.85879	0.00046618	542.8350680009022	70.503	0.45464	70.516	70.272	70.727	0.012421					30	10	4	0	0	0	0.18994	1	8440	8440		90.601	2.4239	1	2522800	+		64821	21167	45666	45731	70066	70066					0.1154804234272433
QVLEQSGGAAS	11	Unmodified	_QVLEQSGGAAS_					0	0	0		ENST00000222990.7_1_7:2294003-2294420:-|nuORF	ENST00000222990.7_1_7:2294003-2294420:-|nuORF	ENST00000222990.7_1_7:2294003-2294420:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7879028320312	2	523.759278	1045.504	-0.48342	-0.0002532	4.3189	0.0022621	3.8355	0.0020089	523.7615093060326	61.288	1.6321	61.031	60.619	62.251	-0.25725					82	40	4	0	0	0	0.02479	1	6786	6786		37.508	7.0045	1	1518300			64822	11194	45667	45732	70067	70067					-0.01692929667046883
QVLEVKEF	8	Unmodified	_QVLEVKEF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.26593017578125	2	496.276575	990.538597	0.57849	0.00028709	-0.83904	-0.0004164	-0.26055	-0.00012931	496.27601313382047	86.832	1.1466	86.69	86.364	87.51	-0.14217					47	26	2	0	0	0	0.027866	1	10597	10597		21.96	10.449	1	250680			64823	5547	45668	45733	70068	70068					0.04294938211717181
QVLFKHSIV	9	Unmodified	_QVLFKHSIV_					0	0	0		ENST00000309137.12_1_16:57187730-57187889:-|nuORF	ENST00000309137.12_1_16:57187730-57187889:-|nuORF	ENST00000309137.12_1_16:57187730-57187889:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8040771484375	2	535.821484	1069.62842	0.069668	3.7329E-05	-0.70527	-0.0003779	-0.6356	-0.00034057	535.8198163365049	66.024	0.46297	66.024	65.721	66.184	0					34	11	4	0	0	0	0.024021	1	7854	7854		49.442	5.3247	1	721820			64824	12040	45669	45734	70069	70069					0.09638612610933706
QVLFQKLSI	9	Unmodified	_QVLFQKLSI_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7764892578125	2	538.329142	1074.64373	-0.72702	-0.00039138	-2.1754	-0.0011711	-2.9024	-0.0015624	538.327114937574	79.181	1.0029	79.181	78.867	79.87	0					27	23	2	0	0	0	0.024477	1	9832	9832		27.882	6.9353	1	186310			64825	10974	45670	45735	70070	70070					0.10939479408125408
QVLGKIER	8	Unmodified	_QVLGKIER_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.271728515625	2	471.790184	941.565815	-0.99078	-0.00046744	-0.30703	-0.00014485	-1.2978	-0.00061229	471.7903790876174	65.001	0.41722	64.739	64.494	64.911	-0.2626					20	10	3	0	0	0	0.027866	1	7669	7669		40.778	0	1	209710			64826	2833	45671	45736	70071	70071					0.0926946654275298
QVLGKIER	8	Unmodified	_QVLGKIER_					0	0	0		nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1;ENSG00000107223|ENST00000224073|EDF1	nc|ENSG00000107223|O60869-2|EDF1	nc|ENSG00000107223|O60869-2|EDF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.790184	941.565815	-0.7121	-0.00033596	0.87212	0.00041146	0.16002	7.5496E-05	471.7908065206871	64.993	0.31955	64.791	64.539	64.859	-0.20253	0.02477	0.00086443	NaN	40.778	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153870			64827	2833	45671	45736							0.0926946654275298
QVLGLILN	8	Unmodified	_QVLGLILN_					0	0	0		nc|ENSG00000161677|Q8TAC2-2|JOSD2;ENSG00000161677|ENST00000598418|JOSD2	nc|ENSG00000161677|Q8TAC2-2|JOSD2	nc|ENSG00000161677|Q8TAC2-2|JOSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.25213623046875	2	435.276378	868.538203	0.0071306	3.1038E-06	0.27093	0.00011793	0.27806	0.00012103	435.27641003976305	78.224	0.49046	78.24	77.989	78.48	0.015907					24	11	3	0	0	0	0.027866	1	9602	9602		31.955	0	1	338260			64828	6888	45672	45737	70072	70072					0.09867563282512037
QVLGPRLKP	9	Unmodified	_QVLGPRLKP_					0	0	0		ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.24560546875	2	504.321651	1006.62875	-0.49451	-0.00024939	-3.6236	-0.0018275	-4.1181	-0.0020769	504.3197492690434	56.163	0.7305	56.007	55.643	56.373	-0.15656					29	18	2	0	0	0	0.024541	1	6115	6115		17.365	0	1	133010			64829	17090	45673	45738	70073	70073					0.12570032330791037
QVLINVLKL	9	Unmodified	_QVLINVLKL_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.269287109375	2	520.347335	1038.68012	0.33699	0.00017535	-1.1415	-0.00059398	-0.80452	-0.00041863	520.3466053721021	75.333	0.36472	75.157	74.986	75.351	-0.17548					20	8	3	0	0	0	0.023181	1	8895	8895		71.296	0	1	206520	+		64830	19208	45674	45739	70074	70074					0.16232356304840323
QVLIVASK	8	Unmodified	_QVLIVASK_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-4|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.2352600097656	2	429.276378	856.538203	0.54684	0.00023475	-0.081401	-3.4943E-05	0.46544	0.0001998	429.2763549072755	25.047	0.55218	25.127	24.825	25.377	0.08009					24	12	3	0	0	0	0.027866	1	1084	1084		10.265	0	1	72311			64831	4267	45675	45740	70075	70075					0.10419563282505351
QVLKCDWW	8	Unmodified	_QVLKCDWW_					0	0	0			REV__nc|ENSG999|O00370|L1_ORF2;REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|21|3|sense	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2869262695312	2	539.262945	1076.51134	-0.89311	-0.00048162	0.70199	0.00037856	-0.19112	-0.00010307	539.263007060623	21.934	0.71363	21.859	21.369	22.082	-0.075296					19	14	3	0	0	0	0.027866	1	671	671		31.955	0	1	34056	+		64832	37256;36246	45676	45741	70076	70076					-0.023858686003450202
QVLMTKHGD	9	Unmodified	_QVLMTKHGD_					0	0	0		ENST00000565906.2_1_15:89533354-89533441:-|nuORF	ENST00000565906.2_1_15:89533354-89533441:-|nuORF	ENST00000565906.2_1_15:89533354-89533441:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7671508789062	2	514.763309	1027.51206	-1.1535	-0.00059379	-0.597	-0.00030731	-1.7505	-0.0009011	515.265278610975	79.604	0.58772	79.432	79.275	79.863	-0.17226					16	13	2	0	0	0	0.02435	1	9827	9827		60.972	15.95	1	106900			64833	16932	45677	45742	70077	70077					-0.0005907395127451309
QVLNEGFVK	9	Unmodified	_QVLNEGFVK_					0	0	0			REV__ENST00000167106.8_2_14:77245571-77245688:+|nuORF	REV__ENST00000167106.8_2_14:77245571-77245688:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8087768554688	2	517.287474	1032.5604	-0.81878	-0.00042354	3.7042	0.0019161	2.8854	0.0014926	517.2893527748768	37.775	1.3381	37.556	36.885	38.223	-0.2195					64	36	2	0	0	0	0.024288	1	3084	3084		71.877	0	1	457890	+		64834	29276	45678	45743	70078	70078					0.04541742960282136
QVLPFLALGV	10	Unmodified	_QVLPFLALGV_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2952880859375	2	528.826235	1055.63792	-1.1412	-0.00060351	-3.7819	-0.002	-4.9231	-0.0026035	528.8237553732624	45.106	0.34785	45.106	44.898	45.246	0					15	9	2	0	0	0	0.03519	1	4354	4354		21.96	5.9531	1	186860			64835	9491	45679	45744	70079	70079					0.11232380896467475
QVLPHPELC	9	Unmodified	_QVLPHPELC_					0	0	0		ENSG00000135632|ENST00000389501|SMYD5	ENSG00000135632|ENST00000389501|SMYD5	ENSG00000135632|ENST00000389501|SMYD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8270263671875	2	518.268227	1034.5219	-0.2509	-0.00013004	-3.3441	-0.0017331	-3.595	-0.0018632	518.2663494854439	35.109	0.67385	34.897	34.519	35.193	-0.21246					35	16	3	0	0	0	0.024457	1	2639	2639		21.96	0	1	226550			64836	4916	45680	45745	70080	70080					0.006021140541179193
QVLPLIESPP	10	Unmodified	_QVLPLIESPP_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8193359375	2	546.818607	1091.62266	-0.22103	-0.00012086	3.4109	0.0018651	3.1898	0.0017443	546.8210785709807	64.404	1.1397	64.404	63.88	65.02	0					92	30	5	0	0	0	0.74632	1	7596	7596		64.207	12.872	1	8679600	+		64837	22774	45681	45746	70081	70081					0.08051469308611559
QVLPLQCRPP	10	Unmodified	_QVLPLQCRPP_					0	0	0			REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF	REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8239135742188	2	575.823701	1149.63285	-1.5785	-0.00090894	1.1312	0.00065138	-0.4473	-0.00025757	575.8241566308503	44.822	1.5709	44.822	44.519	46.09	0					98	45	3	0	0	0	1.0271	1	4319	4319		42.396	5.9494	1	2051300	+		64838	30579	45682	45747	70082	70082					0.06401753762179396
QVLPLQCRPP	10	Unmodified	_QVLPLQCRPP_					0	0	0			REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF	REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8238525390625	2	575.823701	1149.63285	-0.77305	-0.00044514	0.32655	0.00018803	-0.4465	-0.0002571	575.8237889684899	44.236	0.75821	44.273	43.923	44.681	0.0369					69	21	4	0	0	0	0.941	1	4134	4134		51.335	3.4199	1	5533500	+		64839	30579	45682	45747	70083	70083					0.06401753762179396
QVLPPPQIL	9	Unmodified	_QVLPPPQIL_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2477111816406	2	502.810585	1003.60662	0.23323	0.00011727	-1.0269	-0.00051633	-0.79365	-0.00039906	502.8098315527164	61.238	0.72351	61.238	60.958	61.682	0					35	18	3	0	0	0	0.024263	1	7084	7084		71.296	5.4925	1	767980	+		64840	27788	45683	45748	70084	70084					0.10495807862366746
QVLPVILLL	9	Unmodified	_QVLPVILLL_					0	0	0		ENST00000448392.5_1_15:42560200-42565602:-|nuORF;nc|ENSG00000103978|Q8NBN3-2|TMEM87A;ENST00000562946.5_1_15:42519884-42565596:-|nuORF;ENSG00000103978|ENST00000389834|TMEM87A	ENST00000448392.5_1_15:42560200-42565602:-|nuORF	ENST00000448392.5_1_15:42560200-42565602:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.232177734375	2	504.346803	1006.67905	-1.2425	-0.00062663	2.8542	0.0014395	1.6118	0.00081289	504.3480936412386	44.534	0.69226	44.318	43.939	44.631	-0.21632					25	18	2	0	0	0	0.024541	1	4192	4192		13.775	5.544	1	122150			64841	2535	45684	45749	70085	70085					0.175981419359573
QVLQKKGY	8	Unmodified	_QVLQKKGY_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2544860839844	2	482.284734	962.554916	-0.074639	-3.5997E-05	-1.0411	-0.00050211	-1.1157	-0.00053811	482.283763447485	31.016	0.28755	30.775	30.627	30.915	-0.24109					9	6	2	0	0	0	0.027866	1	2008	2008		26.796	0	1	71368			64842	9284	45685	45750	70086	70086					0.07214064168465484
QVLRQPPSRP	10	Unmodified	_QVLRQPPSRP_					0	0	0			REV__nc|ENSG00000065054|Q15599-3|NHERF2	REV__nc|ENSG00000065054|Q15599-3|NHERF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3430786132812	2	589.343646	1176.67274	-0.98297	-0.00057931	0.18267	0.00010765	-0.80031	-0.00047166	589.3435769896907	103.58	0.62865	103.59	103.35	103.98	0.0054245					48	16	4	0	0	0	1.0616	1	13260	13260		37.812	2.1932	1	621970	+		64843	36463	45686	45751	70087	70087					0.09147016757128767
QVLRQPPSRP	10	Unmodified	_QVLRQPPSRP_					0	0	0			REV__nc|ENSG00000065054|Q15599-3|NHERF2	REV__nc|ENSG00000065054|Q15599-3|NHERF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.34326171875	2	589.343646	1176.67274	-0.33817	-0.0001993	-1.0615	-0.00062561	-1.3997	-0.0008249	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.1286	1	10953	10953		25.574	1.3713	1	6196800	+		64844	36463	45686	45751	70088	70088					0.09147016757128767
QVLRQPPSRP	10	Unmodified	_QVLRQPPSRP_					0	0	0			REV__nc|ENSG00000065054|Q15599-3|NHERF2	REV__nc|ENSG00000065054|Q15599-3|NHERF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3401489257812	2	589.343646	1176.67274	-0.76031	-0.00044809	-0.73655	-0.00043408	-1.4969	-0.00088216	589.3430440911279	97.858	1.2319	97.693	96.768	98	-0.16521					44	28	2	0	0	0	1.0122	1	12070	12070		44.377	1.981	1	151610	+		64845	36463	45686	45751	70089	70089					0.09147016757128767
QVLRQPPSRP	10	Unmodified	_QVLRQPPSRP_					0	0	0			REV__nc|ENSG00000065054|Q15599-3|NHERF2	REV__nc|ENSG00000065054|Q15599-3|NHERF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	589.343646	1176.67274	1.3987	0.0008243	-2.6555	-0.001565	-1.2568	-0.00074068	589.3418896917901	97.998	1.8894	97.996	97.056	98.946	-0.0020752	0.15145	-0.0010058	NaN	44.377	60	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154890	+		64846	36463	45686	45751							0.09147016757128767
QVLRQPPSRP	10	Unmodified	_QVLRQPPSRP_					0	0	0			REV__nc|ENSG00000065054|Q15599-3|NHERF2	REV__nc|ENSG00000065054|Q15599-3|NHERF2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	589.343646	1176.67274	-0.76031	-0.00044809	-0.73655	-0.00043408	-1.4969	-0.00088216	589.3430440911279	97.858	1.2319	97.693	96.768	98	-0.16521	-0.15145	0.001256	NaN	44.377	44	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151610	+		64847	36463	45686	45751							0.09147016757128767
QVLRRTHH	8	Unmodified	_QVLRRTHH_					0	0	0		ENST00000583277.1_1_17:7468610-7469096:+|nuORF	ENST00000583277.1_1_17:7468610-7469096:+|nuORF	ENST00000583277.1_1_17:7468610-7469096:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7869873046875	2	523.801949	1045.58934	-0.31705	-0.00016607	2.3535	0.0012328	2.0364	0.0010667	523.8029621439464	61.394	0.85942	61.188	60.772	61.631	-0.20599					44	20	4	0	0	0	0.027866	1	6822	6822		60.972	11.53	1	1338600			64848	17193	45687	45752	70090	70090					0.06837325099945701
QVLRRTHH	8	Unmodified	_QVLRRTHH_					0	0	0		ENST00000583277.1_1_17:7468610-7469096:+|nuORF	ENST00000583277.1_1_17:7468610-7469096:+|nuORF	ENST00000583277.1_1_17:7468610-7469096:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.787353515625	2	523.801949	1045.58934	-0.74573	-0.00039061	4.0288	0.0021103	3.283	0.0017197	523.804747818068	61.093	0.19395	60.84	60.697	60.891	-0.25373					6	4	2	0	0	0	0.027866	1	6809	6809		51.335	12.529	1	276610			64849	17193	45687	45752	70091	70091					0.06837325099945701
QVLRRTHH	8	Unmodified	_QVLRRTHH_					0	0	0		ENST00000583277.1_1_17:7468610-7469096:+|nuORF	ENST00000583277.1_1_17:7468610-7469096:+|nuORF	ENST00000583277.1_1_17:7468610-7469096:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7867431640625	2	523.801949	1045.58934	-0.39297	-0.00020584	2.3961	0.0012551	2.0032	0.0010493	523.802939353153	61.476	0.6591	61.219	60.888	61.547	-0.25725					42	15	4	0	0	0	0.027866	1	6821	6821		51.335	1.8939	1	1119600			64850	17193	45687	45752	70092	70092					0.06837325099945701
QVLRVKGAN	9	Unmodified	_QVLRVKGAN_					0	0	0		SPATA5|p.D199N|1|0.04|ENSG00000145375|chr4:122934186-122934186|G/A|missense_variant	SPATA5|p.D199N|1|0.04|ENSG00000145375|chr4:122934186-122934186|G/A|missense_variant	SPATA5|p.D199N|1|0.04|ENSG00000145375|chr4:122934186-122934186|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7719421386719	2	492.801083	983.587613	0.019952	9.8323E-06	-0.66921	-0.00032979	-0.64926	-0.00031996	492.80061309189915	32.702	1.0775	32.765	32.428	33.506	0.062885					51	28	3	0	0	0	0.024412	1	2278	2278		24.203	0	1	407770			64851	37959	45688	45753	70093	70093					0.09516271291317935
QVLSIKQPL	9	Unmodified	_QVLSIKQPL_					0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7664794921875	2	513.321317	1024.62808	-0.48297	-0.00024792	0.29898	0.00015347	-0.184	-9.445E-05	513.3213739294075	79.163	0.83287	79.163	78.783	79.616	0					33	19	2	0	0	0	0.02435	1	9825	9825		51.335	20.832	1	160030	+		64852	19752	45689	45754	70094	70094					0.11675192891084407
QVLSVCVEE	9	Unmodified	_QVLSVCVEE_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7916564941406	2	503.2497	1004.48485	-0.89762	-0.00045173	-1.3039	-0.00065618	-2.2015	-0.0011079	503.24833951515933	62.461	0.2249	62.278	62.073	62.297	-0.18386					8	5	2	0	0	0	0.024405	1	7028	7028		35.618	8.9254	1	208050			64853	456;1424	45690	45755	70095	70095					-0.01721602282304957
QVLSVCVEE	9	Unmodified	_QVLSVCVEE_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.2497	1004.48485	-0.18156	-9.137E-05	-3.587	-0.0018052	-3.7686	-0.0018965	503.248213213116	62.439	0.23211	62.218	62.005	62.237	-0.22097	-0.029711	-0.00079985	NaN	40.778	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99903			64854	456;1424	45690	45755							-0.01721602282304957
QVLVGGYMV	9	Unmodified	_QVLVGGYMV_					0	0	0			REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.8075866699219	2	483.259871	964.505189	-0.97155	-0.00046951	2.6068	0.0012598	1.6352	0.00079024	483.26037988671004	64.715	0.26859	64.452	64.304	64.572	-0.2626					11	6	3	0	0	0	0.024325	1	7587	7587		40.573	17.53	1	116310	+		64855	23621	45691	45756	70096	70096					0.021516131681664774
QVLVGGYMV	9	Unmodified	_QVLVGGYMV_					0	0	0			REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.259871	964.505189	-0.14182	-6.8536E-05	8.1248	0.0039264	7.983	0.0038579	483.26349596527086	64.362	0.31113	64.106	63.919	64.23	-0.25562	-0.21456	0.0041519	NaN	40.573	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66811	+		64856	23621	45691	45756							0.021516131681664774
QVLVKRIY	8	Unmodified	_QVLVKRIY_					0	0	0		nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.78448486328125	2	509.824027	1017.6335	-0.14241	-7.2606E-05	-0.22886	-0.00011668	-0.37127	-0.00018928	509.8237525354504	49.846	0.22087	49.567	49.472	49.693	-0.27977					10	5	2	0	0	0	0.027866	1	5027	5027		42.474	21.993	1	127880			64857	10672	45692	45757	70097	70097					0.12538916473556583
QVLVLPEL	8	Unmodified	_QVLVLPEL_					0	0	0			REV__ENSG00000261587|ENST00000696146|TMEM249	REV__ENSG00000261587|ENST00000696146|TMEM249	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.25543212890625	2	455.784036	909.553519	0.046037	2.0983E-05	3.0556	0.0013927	3.1016	0.0014137	455.78533169499883	45.509	0.88062	45.553	45.279	46.16	0.043877					55	25	3	0	0	0	0.027866	1	4368	4368		31.955	6.5047	1	911700	+		64858	29114	45693	45758	70098	70098					0.09512430079701062
QVLVVCKQL	9	Unmodified	_QVLVVCKQL_					0	0	0		CD163L1|p.A403V|1|0.38|ENSG00000177675|chr12:7403735-7403735|G/A|missense_variant	CD163L1|p.A403V|1|0.38|ENSG00000177675|chr12:7403735-7403735|G/A|missense_variant	CD163L1|p.A403V|1|0.38|ENSG00000177675|chr12:7403735-7403735|G/A|missense_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	515.3114624023438	2	515.309895	1028.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.71	1	18.507	18.007	19.007	-0.20371								0	0	0	0.6291	1	328	328		35.618	2.8059	1				64859	232	45694	45759	70099	70099					0.09207850501957182
QVLWVLQP	8	Unmodified	_QVLWVLQP_					0	0	0			REV__ENST00000513347.1_1_17:46972569-46972680:+|nuORF	REV__ENST00000513347.1_1_17:46972569-46972680:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.78729248046875	2	491.789653	981.564752	-0.4029	-0.00019814	1.8382	0.000904	1.4353	0.00070585	491.79044520812624	78.443	0.45865	78.459	78.315	78.774	0.015907					13	10	2	0	0	0	0.027866	1	9655	9655		40.573	0	1	202640	+		64860	34153	45695	45760	70100	70100					0.07323252173853234
QVMEQSGGLSD	11	Unmodified	_QVMEQSGGLSD_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.8239135742188	2	575.755878	1149.4972	-1.5182	-0.00087412	1.4879	0.00085666	-0.030332	-1.7464E-05	575.7566053834125	44.992	0.55284	44.992	44.725	45.278	0					35	15	3	0	0	0	0.024787	1	4319	4319		49.536	7.1399	1	499850	+		64861	20217	45696	45761	70101	70101					-0.07156610609922609
QVMEQSGGLSD	11	Unmodified	_QVMEQSGGLSD_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	575.755878	1149.4972	-0.66665	-0.00038383	0.38583	0.00022215	-0.28082	-0.00016168	575.7559897199565	45.166	0.60683	45.066	44.749	45.356	-0.099445	-0.0056716	-0.0005121	NaN	49.536	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576500	+		64862	20217	45696	45761							-0.07156610609922609
QVMEQSGGLSD	11	Unmodified	_QVMEQSGGLSD_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	575.755878	1149.4972	-0.38109	-0.00021941	-0.0034609	-1.9926E-06	-0.38455	-0.00022141	575.7558235252077	45.374	0.49319	45.121	44.865	45.359	-0.25252	0.049202	-0.00096038	NaN	49.536	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442050	+		64863	20217	45696	45761							-0.07156610609922609
QVMEQSGGLSD	11	Unmodified	_QVMEQSGGLSD_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	575.755878	1149.4972	-0.63197	-0.00036386	0.52681	0.00030331	-0.10516	-6.0549E-05	575.7560928525851	45.329	0.55602	45.118	44.793	45.349	-0.21109	0.045642	-0.00034977	NaN	49.536	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382820	+		64864	20217	45696	45761							-0.07156610609922609
QVMLAPLIS	9	Unmodified	_QVMLAPLIS_					0	0	0		nc|ENSG00000079739|P36871-3|PGM1;ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1	nc|ENSG00000079739|P36871-3|PGM1	nc|ENSG00000079739|P36871-3|PGM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2818603515625	2	486.283346	970.552139	-0.76525	-0.00037213	-2.3781	-0.0011564	-3.1434	-0.0015286	486.2819854372296	81.531	0.48997	81.401	81.094	81.584	-0.13075					21	11	2	0	0	0	0.024405	1	10085	10085		27.882	1.0861	1	315650			64865	1673	45697	45762	70102	70102					0.06568472719300189
QVMPIDQDL	9	Unmodified	_QVMPIDQDL_					0	0	0			REV__ENST00000540040.2_1_17:22023744-22023807:+|nuORF	REV__ENST00000540040.2_1_17:22023744-22023807:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7994384765625	2	529.762975	1057.5114	-0.86628	-0.00045892	1.2545	0.00066458	0.3882	0.00020566	529.7633759546717	83.562	0.60144	83.589	83.3	83.901	0.026558					36	13	3	0	0	0	0.022832	1	10354	10354		82.241	18.033	1	680280	+		64866	34741	45698	45763	70103	70103					-0.01505913390974456
QVMQVLGPE	9	Unmodified	_QVMQVLGPE_					0	0	0		nc|ENSG00000114107|Q8NHQ1-2|CEP70;nc|ENSG00000114107|Q8NHQ1-5|CEP70;nc|ENSG00000114107|Q8NHQ1-4|CEP70;ENSG00000114107|ENST00000264982|CEP70	nc|ENSG00000114107|Q8NHQ1-2|CEP70	nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.31280517578125	2	500.760235	999.505917	0.46054	0.00023062	-0.67791	-0.00033947	-0.21737	-0.00010885	500.76035554340484	77.854	0.15968	77.643	77.545	77.705	-0.21087					5	3	2	0	0	0	0.024541	1	9588	9588		30.504	22.813	1	62357			64867	3342	45699	45764	70104	70104					0.0061440781720421
QVNAAFVLVP	10	Unmodified	_QVNAAFVLVP_					0	0	0			REV__ENST00000227752.7_1_11:117871181-117871418:+|nuORF	REV__ENST00000227752.7_1_11:117871181-117871418:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2825317382812	2	529.305667	1056.59678	-0.39604	-0.00020963	-0.25241	-0.0001336	-0.64845	-0.00034323	529.3054276021669	62.51	0.54816	62.252	61.82	62.368	-0.25824					35	13	4	0	0	0	0.03519	1	6987	6987		27.882	2.3082	1	3300500	+		64868	29388	45700	45765	70105	70105					0.07074619856962272
QVNELTLFI	9	Unmodified	_QVNELTLFI_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8030395507812	2	538.802957	1075.59136	-0.086687	-4.6707E-05	-0.31401	-0.00016919	-0.4007	-0.0002159	538.8026445515942	93.684	1.7077	93.562	93.234	94.942	-0.12215					106	39	4	0	0	0	0.17822	2	11573	11561;11573		93.195	13.483	1	3274100	+		64869	29088	45701	45766	70106;70107	70107					0.05658896274530889
QVNIGVEIIV	10	Unmodified	_QVNIGVEIIV_					0	0	0		ENST00000379426.1_1_6:11575846-11576137:+|nuORF	ENST00000379426.1_1_6:11575846-11576137:+|nuORF	ENST00000379426.1_1_6:11575846-11576137:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3189697265625	2	542.324057	1082.63356	-0.52573	-0.00028511	-0.96956	-0.00052582	-1.4953	-0.00081093	542.3233947376484	59.49	0.30304	59.575	59.314	59.617	0.085682					11	7	2	0	0	0	0.03519	1	6707	6707		45.972	8.1607	1	99699			64870	13262	45702	45767	70108	70108					0.09554871682894372
QVNKVAKGPA	10	Unmodified	_QVNKVAKGPA_					0	0	0			REV__ENSG00000112769|ENST00000230538|LAMA4	REV__ENSG00000112769|ENST00000230538|LAMA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2716979980469	2	506.300916	1010.58728	-0.89442	-0.00045285	1.1877	0.00060132	0.29324	0.00014847	506.3008969113782	31.364	0.33627	31.364	31.173	31.509	0					10	7	2	0	0	0	0.03519	1	2084	2084		71.296	28.9	1	45141	+		64871	22025	45703	45768	70109	70109					0.0824085157147465
QVNLEAEIT	9	Unmodified	_QVNLEAEIT_					0	0	0		ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENST00000446618.1_1_22:19245879-19246326:+|nuORF	ENST00000446618.1_1_22:19245879-19246326:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2945251464844	2	508.766571	1015.51859	0.55766	0.00028372	-1.0897	-0.00055439	-0.53202	-0.00027067	508.7658663421955	63.517	0.6167	63.517	63.301	63.917	0					22	16	2	0	0	0	0.024457	1	7441	7441		21.96	0	1	240650			64872	14458	45704	45769	70110	70110					0.011451424810957178
QVNLTVRRKVL	11	Unmodified	_QVNLTVRRKVL_					0	0	0		ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.61883544921875	3	442.617377	1324.8303	1.3023	0.0005764	-1.1578	-0.00051246	0.14445	6.3934E-05	442.6168112482538	17.081	0.60054	16.926	16.609	17.209	-0.15403					32	11	4	0	0	0	1.0739	1	148	148		18.531	0.69791	1	302430			64873	9623	45705	45770	70111	70111					0.1808809629649204
QVNQQIPQ	8	Unmodified	_QVNQQIPQ_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2673645019531	2	477.753798	953.493044	0.14729	7.0367E-05	4.1207	0.0019687	4.268	0.002039	477.7559522684866	49.391	0.54574	49.239	48.935	49.481	-0.15277					18	14	2	0	0	0	0.027866	1	5069	5069		45.952	19.156	1	181930			64874	7618	45706	45771	70112	70112					0.014437127493238222
QVNQQIPQ	8	Unmodified	_QVNQQIPQ_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.753798	953.493044	1.0434	0.0004985	3.1565	0.001508	4.1999	0.0020065	477.7558037916658	49.159	0.60944	49.159	48.899	49.508	0	0.022963	-0.0010066	NaN	37.159	22	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187910			64875	7618	45706	45771							0.014437127493238222
QVNQQIPQ	8	Unmodified	_QVNQQIPQ_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.753798	953.493044	-0.17097	-8.1683E-05	4.3403	0.0020736	4.1693	0.0019919	477.7556547141806	49.159	0.80329	49.058	48.726	49.529	-0.1008	-0.077648	0.00012461	NaN	37.159	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1427100			64876	7618	45706	45771							0.014437127493238222
QVNQQIPQ	8	Unmodified	_QVNQQIPQ_					0	0	0		ENST00000558103.1_1_15:65450907-65451087:-|nuORF;ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	ENST00000558103.1_1_15:65450907-65451087:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.753798	953.493044	0.090115	4.3053E-05	4.141	0.0019784	4.2311	0.0020214	477.7555530134452	49.304	0.68489	49.122	48.809	49.494	-0.18206	-0.014024	-6.5815E-05	NaN	37.159	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1455100			64877	7618	45706	45771							0.014437127493238222
QVNQSDKFMF	10	Oxidation (M)	_QVNQSDKFM(Oxidation (M))F_		QVNQSDKFM(1)F		QVNQSDKFM(46)F	0	0	1			REV__ENST00000541239.5_1_13:111296410-111296557:-|nuORF	REV__ENST00000541239.5_1_13:111296410-111296557:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.52972412109375	3	420.529017	1258.56522	0.82996	0.00034902	2.3407	0.00098434	3.1707	0.0013334	420.5298313557173	18.378	1.3839	18.222	17.605	18.989	-0.15637					55	27	3	0	0	0	0.99657	1	295	295		46.457	10.01	1	296690	+		64878	34764	45707	45772	70113	70113		943			-0.05371740959276394
QVNVDIQTL	9	Unmodified	_QVNVDIQTL_					0	0	0			REV__ENSG00000164106|ENST00000296506|SCRG1	REV__ENSG00000164106|ENST00000296506|SCRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7962646484375	2	515.282389	1028.55022	-1.1605	-0.000598	1.1649	0.00060027	0.0044133	2.2741E-06	515.2827924612935	35.747	0.84849	35.704	35.287	36.136	-0.042458					33	22	2	0	0	0	0.024438	1	2711	2711		22.58	8.4425	1	192390	+		64879	25694	45708	45773	70114	70114					0.03709135235044414
QVNVDIQTL	9	Unmodified	_QVNVDIQTL_					0	0	0			REV__ENSG00000164106|ENST00000296506|SCRG1	REV__ENSG00000164106|ENST00000296506|SCRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.282389	1028.55022	-0.57554	-0.00029656	0.53092	0.00027357	-0.044617	-2.299E-05	515.2827103785775	36.223	0.13756	36.018	35.953	36.091	-0.20518	0.14943	-0.00074951	NaN	22.58	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47077	+		64880	25694	45708	45773							0.03709135235044414
QVPGWGRGAP	10	Unmodified	_QVPGWGRGAP_					0	0	0		ENST00000528947.5_2_11:7535100-7569685:+|nuORF	ENST00000528947.5_2_11:7535100-7569685:+|nuORF	ENST00000528947.5_2_11:7535100-7569685:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3086547851562	2	512.769783	1023.52501	-0.13165	-6.7507E-05	-2.3282	-0.0011938	-2.4599	-0.0012613	512.7672017712806	54.684	0.13257	54.534	54.442	54.574	-0.15036					5	3	2	0	0	0	0.03519	1	5955	5955		39.253	0	1	86554			64881	16196	45709	45774	70115	70115					0.014191252231285034
QVPHSASVPSL	11	Unmodified	_QVPHSASVPSL_					0	0	0			REV__nc|ENSG00000069702|Q03167-2|TGFBR3	REV__nc|ENSG00000069702|Q03167-2|TGFBR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.845947265625	2	561.301113	1120.58767	0.71293	0.00040017	-2.228	-0.0012506	-1.5151	-0.00085044	561.2998049109146	95.986	1.15	95.863	95.334	96.484	-0.12305					35	26	2	0	0	0	0.024756	1	11789	11789		36.447	3.6343	1	91286	+		64882	20406	45710	45775	70116	70116					0.032202265006844755
QVPIQVVQV	9	Unmodified	_QVPIQVVQV_					0	0	0		ENSG00000132517|ENST00000254853|SLC52A1;ENST00000575919.1_1_17:4936703-4937901:-|nuORF;ENST00000573674.1_1_17:4936254-4937771:-|nuORF	ENSG00000132517|ENST00000254853|SLC52A1	ENSG00000132517|ENST00000254853|SLC52A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2587890625	2	505.305667	1008.59678	-0.034049	-1.7205E-05	-0.15188	-7.6744E-05	-0.18592	-9.3949E-05	505.30529026775883	41.12	0.59812	41.143	40.83	41.429	0.023006					29	16	2	0	0	0	0.024381	1	3625	3625		37.159	19.794	1	309260			64883	4615	45711	45776	70117	70117					0.09282619856992369
QVPIRVFLD	9	Unmodified	_QVPIRVFLD_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2578125	2	543.818941	1085.62333	-0.5057	-0.00027501	3.473	0.0018887	2.9673	0.0016137	543.8203551803705	47.635	0.62528	47.448	47.199	47.825	-0.18684					45	16	4	0	0	0	0.024466	1	4669	4669		24.519	8.8774	1	1609000			64884	7231	45712	45777	70118	70118					0.08394308748324875
QVPKAAPL	8	Unmodified	_QVPKAAPL_					0	0	0		ENST00000496023.1_1_7:4798670-4799378:+|nuORF	ENST00000496023.1_1_7:4798670-4799378:+|nuORF	ENST00000496023.1_1_7:4798670-4799378:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	412.7463684082031	2	412.255446	822.496338	-0.037652	-1.5522E-05	-0.098114	-4.0448E-05	-0.13577	-5.597E-05	412.2554067861243	84.372	0.419	84.399	84.119	84.538	0.026558					15	9	2	0	0	0	0.027866	1	10487	10487		13.775	0	1	55381			64885	15557	45713	45778	70119	70119					0.07799007593985152
QVPKLYAVS	9	Unmodified	_QVPKLYAVS_					0	0	0			REV__ENSG00000163380|ENST00000420581|LMOD3	REV__ENSG00000163380|ENST00000420581|LMOD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.7906494140625	2	502.792392	1003.57023	0.8755	0.00044019	-4.2294	-0.0021265	-3.3539	-0.0016863	502.7903275763559	18.378	1.0868	18.222	18.002	19.088	-0.15637					45	21	4	0	0	0	0.59099	1	298	298		53.351	7.3995	1	2187400	+		64886	25561	45714	45779	70120	70120					0.06858930965654508
QVPKLYAVS	9	Unmodified	_QVPKLYAVS_					0	0	0			REV__ENSG00000163380|ENST00000420581|LMOD3	REV__ENSG00000163380|ENST00000420581|LMOD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.792392	1003.57023	0.078167	3.9302E-05	-3.2574	-0.0016378	-3.1792	-0.0015985	502.7907992341122	18.392	0.39648	18.189	18.014	18.411	-0.20371	-0.016687	0.00063922	NaN	53.351	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419860	+		64887	25561	45714	45779							0.06858930965654508
QVPLKPKS	8	Unmodified	_QVPLKPKS_					0	0	0		ENST00000501338.5_1_5:96271077-96271491:-|nuORF	ENST00000501338.5_1_5:96271077-96271491:-|nuORF	ENST00000501338.5_1_5:96271077-96271491:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7531433105469	2	448.781828	895.549102	-0.082015	-3.6807E-05	0.93402	0.00041917	0.85201	0.00038236	448.7820948934875	65.338	0.48084	65.338	65.124	65.605	0					15	13	2	0	0	0	0.027866	1	7759	7759		31.955	0	1	202590			64888	15654	45715	45780	70121	70121					0.09714965656803543
QVPLLLRP	8	Unmodified	_QVPLLLRP_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.30499267578125	2	468.30547	934.596387	-0.75523	-0.00035368	-0.01508	-7.062E-06	-0.77031	-0.00036074	468.3054831230446	61.988	0.80659	61.988	61.529	62.335	0					76	23	5	0	0	0	0.71833	1	7213	7213		65.803	5.5092	1	45601000	+		64889	24308	45716	45781	70122	70122					0.12647244927791235
QVPLLLRP	8	Unmodified	_QVPLLLRP_					0	0	0			REV__ENSG00000144040|ENST00000272433|SFXN5	REV__ENSG00000144040|ENST00000272433|SFXN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.3057556152344	2	468.30547	934.596387	-0.14446	-6.7653E-05	-0.86869	-0.00040681	-1.0132	-0.00047447	468.3050202581613	61.906	1.6994	61.968	61.542	63.242	0.062767					95	44	5	0	0	0	0.845	1	7076	7076		55.504	2.1528	1	43419000	+		64890	24308	45716	45781	70123	70123					0.12647244927791235
QVPLRSLD	8	Unmodified	_QVPLRSLD_					0	0	0		ENST00000285947.4_2_5:56205507-56207046:+|nuORF	ENST00000285947.4_2_5:56205507-56207046:+|nuORF	ENST00000285947.4_2_5:56205507-56207046:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2568054199219	2	464.266542	926.51853	-0.086411	-4.0118E-05	0.47976	0.00022274	0.39335	0.00018262	464.26664508894936	54.938	0.72438	54.788	54.375	55.099	-0.15036					40	20	3	0	0	0	0.027866	1	5962	5962		11.511	0.64546	1	460120			64891	11754	45717	45782	70124	70124					0.052331872717559236
QVPMLFVW	8	Unmodified	_QVPMLFVW_					0	0	0			REV__ENST00000199448.8_2_7:37990187-37990421:+|nuORF	REV__ENST00000199448.8_2_7:37990187-37990421:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8006591796875	2	510.272781	1018.53101	0.061477	3.137E-05	-2.8456	-0.001452	-2.7841	-0.0014207	510.2698534774197	59.282	0.25824	59.368	59.206	59.464	0.085682					8	6	2	0	0	0	0.027866	1	6681	6681		9.4706	0	1	50872	+		64892	29296	45718	45783	70125	70125					0.022485074104451996
QVPNAPNKP	9	Unmodified	_QVPNAPNKP_					0	0	0			REV__nc|ENSG00000257017|P00738-2|HP	REV__nc|ENSG00000257017|P00738-2|HP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7483215332031	2	482.764166	963.513779	0.094305	4.5527E-05	-3.9614	-0.0019124	-3.8671	-0.0018669	482.76216385453034	68.224	1.4687	68.243	67.549	69.017	0.018913					62	38	2	0	0	0	0.024323	1	8149	8149		35.618	11.099	1	200260	+		64893	29084	45719	45784	70126	70126					0.030563031289943865
QVPNAPNKP	9	Unmodified	_QVPNAPNKP_					0	0	0			REV__nc|ENSG00000257017|P00738-2|HP	REV__nc|ENSG00000257017|P00738-2|HP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	482.764166	963.513779	0.12672	6.1173E-05	-4.0854	-0.0019723	-3.9587	-0.0019111	482.7621413815857	68.423	1.516	68.162	67.316	68.832	-0.26166	-0.039805	5.1519E-06	NaN	35.618	66	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312560	+		64894	29084	45719	45784							0.030563031289943865
QVPNAPNKP	9	Unmodified	_QVPNAPNKP_					0	0	0			REV__nc|ENSG00000257017|P00738-2|HP	REV__nc|ENSG00000257017|P00738-2|HP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	482.764166	963.513779	0.28776	0.00013892	-4.0129	-0.0019373	-3.7251	-0.0017984	482.76211098498305	68.492	1.5812	68.249	67.208	68.79	-0.24277	0.047936	7.5142E-05	NaN	35.618	55	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244280	+		64895	29084	45719	45784							0.030563031289943865
QVPNAPNKP	9	Unmodified	_QVPNAPNKP_					0	0	0			REV__nc|ENSG00000257017|P00738-2|HP	REV__nc|ENSG00000257017|P00738-2|HP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	482.764166	963.513779	0.53665	0.00025908	-4.2383	-0.0020461	-3.7017	-0.001787	482.76194921487604	68.312	1.4159	68.081	67.386	68.802	-0.23047	-0.12021	-0.0001425	NaN	35.618	62	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215690	+		64896	29084	45719	45784							0.030563031289943865
QVPNERRRRRR	11	Unmodified	_QVPNERRRRRR_					0	0	0			REV__ENST00000305123.5_1_2:227663922-227664009:-|nuORF	REV__ENST00000305123.5_1_2:227663922-227664009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8368835449219	3	508.301445	1521.88251	-0.32824	-0.00016684	4.3252	0.0021985	3.997	0.0020317	508.63799345788533	17.481	0.49854	17.274	17.116	17.614	-0.20669					11	9	2	0	0	0	0.024856	1	208	208		9.2118	3.2108	1	15242	+		64897	30111	45720	45785	70127	70127					0.1424407248280204
QVPNSLPLD	9	Unmodified	_QVPNSLPLD_					0	0	0			REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.8062744140625	2	491.763832	981.513111	0.9162	0.00045056	-3.0329	-0.0014915	-2.1167	-0.0010409	491.76248564969404	96.727	0.44176	96.727	96.528	96.97	-3.0518E-05					23	9	4	0	0	0	0.024292	1	12241	12241		58.782	33.332	1	61394	+		64898	25840	45721	45786	70128	70128					0.02161463689287757
QVPSPANGVI	10	Unmodified	_QVPSPANGVI_					0	0	0		ENST00000556582.5_1_14:75348625-75357926:+|nuORF;ENST00000555071.5_1_14:75348653-75357926:+|nuORF;ENSG00000119689|ENST00000334220|DLST;ENST00000555988.1_2_14:75356010-75360059:+|nuORF;nc|ENSG00000119689|P36957-2|DLST	ENST00000556582.5_1_14:75348625-75357926:+|nuORF	ENST00000556582.5_1_14:75348625-75357926:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.2723083496094	2	491.271824	980.529095	-0.36039	-0.00017705	0.14765	7.2535E-05	-0.21274	-0.00010451	491.27179149496607	30.986	0.91002	30.801	30.49	31.4	-0.18452					54	22	5	0	0	0	0.77808	1	2028	2028		62.107	10.772	1	1607200			64899	3755	45722	45787	70129	70129					0.03805169926192775
QVPSWTSSGL	10	Unmodified	_QVPSWTSSGL_					0	0	0			REV__ENSG00000173662|ENST00000333172|TAS1R1	REV__ENSG00000173662|ENST00000333172|TAS1R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3229370117188	2	531.266739	1060.51892	-1.3035	-0.00069253	1.4605	0.00077592	0.15696	8.3387E-05	531.7696265387424	37.14	1.4205	36.921	36.447	37.868	-0.2195					68	36	2	0	0	0	0.03519	1	2886	2886		25.574	3.6142	1	310740	+		64900	26795	45723	45788	70130	70130					-0.008914377990549838
QVPVWLVL	8	Unmodified	_QVPVWLVL_					0	0	0		ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.27008056640625	2	477.294571	952.574589	-0.64163	-0.00030624	0.90292	0.00043096	0.2613	0.00012472	477.29543155175946	35.22	0.11167	35.198	35.122	35.233	-0.021767					4	2	2	0	0	0	0.027866	1	2678	2678		20.482	0	1	24128			64901	8594	45724	45789	70131	70131					0.09640440179214238
QVPYHKGN	8	Unmodified	_QVPYHKGN_					0	0	0		ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.78814697265625	2	471.743234	941.471915	0.065608	3.095E-05	-4.4436	-0.0020963	-4.378	-0.0020653	471.74099013637726	23.82	0.47223	23.82	23.607	24.08	0					23	10	3	0	0	0	0.027866	1	954	954		24.203	8.5609	1	199160			64902	3878	45725	45790	70132	70132					-0.0011625255953049418
QVPYSLSH	8	Unmodified	_QVPYSLSH_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7947082519531	2	465.737617	929.460681	-0.20457	-9.5278E-05	3.8899	0.0018117	3.6854	0.0017164	465.73930481627195	34.048	1.5171	33.841	32.889	34.406	-0.20696					53	38	2	0	0	0	0.027866	1	2458	2458		42.474	23.114	1	152220	+		64903	28189	45726	45791	70133	70133					-0.006870746536719707
QVQEELLNT	9	Unmodified	_QVQEELLNT_					0	0	0		CON__Q03247	CON__Q03247	CON__Q03247	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.305419921875	2	537.277303	1072.54005	-0.76513	-0.00041109	-4.1422	-0.0022255	-4.9074	-0.0026366	537.2747412152465	49.227	0.2821	49.074	48.829	49.111	-0.15277					11	7	2	0	0	0	0.024367	1	5007	5007		36.447	10.873	1	426440		+	64904	533	45727	45792	70134	70134					0.006685275098334387
QVQEIVKRRL	10	Unmodified	_QVQEIVKRRL_					0	0	0			REV__CON__P02672	REV__CON__P02672	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.8926391601562	2	634.893503	1267.77245	-0.8856	-0.00056226	-0.78632	-0.00049923	-1.6719	-0.0010615	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.0508	1	13022	13022		39.253	2.8061	1	1402800	+	+	64905	19540	45728	45793	70135	70135					0.14927834371087556
QVQGAQPPIV	10	Unmodified	_QVQGAQPPIV_					0	0	0			REV__ENST00000272193.10_1_1:204085443-204095259:+|nuORF	REV__ENST00000272193.10_1_1:204085443-204095259:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.811279296875	2	518.792924	1035.57129	-0.69188	-0.00035894	1.9661	0.00102	1.2742	0.00066105	518.7937290905418	60.285	0.47984	60.285	60.066	60.546	0					20	12	2	0	0	0	0.03519	1	6965	6965		42.396	0	1	312670	+		64906	24289	45729	45794	70136	70136					0.05493145334548899
QVQHIQVSE	9	Unmodified	_QVQHIQVSE_					0	0	0		ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3194580078125	2	534.277638	1066.54072	-0.91798	-0.00049046	1.0061	0.00053756	0.088168	4.7106E-05	534.2781416920279	33.692	0.6355	33.692	33.454	34.09	0					39	16	4	0	0	0	0.024323	1	2485	2485		44.117	0	1	1186700			64907	8025	45730	45795	70137	70137					0.010113669495240174
QVQKFLFLSV	10	Unmodified	_QVQKFLFLSV_					0	0	0		ENST00000533125.1_8:145505676-145515010:-|nuORF	ENST00000533125.1_8:145505676-145515010:-|nuORF	ENST00000533125.1_8:145505676-145515010:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.5719909667969	3	403.572775	1207.69649	-0.75971	-0.0003066	-1.549	-0.00062512	-2.3087	-0.00093171	403.57214569371973	42.804	1.3312	42.578	42.26	43.591	-0.22597					97	35	4	0	0	0	1.0909	1	3868	3868		33.922	2.2874	1	4823100			64908	16309	45731	45796	70138	70138					0.10095437470909019
QVQKKKKI	8	Unmodified	_QVQKKKKI_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.3088073730469	2	500.337301	998.66005	0.3169	0.00015856	-0.4279	-0.00021409	-0.111	-5.5536E-05	500.3369667058658	21.41	0.43097	21.233	20.967	21.397	-0.17721					17	8	3	0	0	0	0.027866	1	661	661		42.474	0	1	101700			64909	4532	45732	45797	70139	70139					0.1606660536488107
QVQKLKVK	8	Unmodified	_QVQKLKVK_					0	0	0		ENSG00000133265|ENST00000433386|HSPBP1;nc|ENSG00000133265|Q9NZL4-3|HSPBP1	ENSG00000133265|ENST00000433386|HSPBP1	ENSG00000133265|ENST00000433386|HSPBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3088073730469	2	485.824027	969.633501	0.067356	3.2723E-05	-0.31784	-0.00015442	-0.25049	-0.00012169	485.8238697348284	20.538	0.2968	20.37	20.197	20.494	-0.16774					8	5	2	0	0	0	0.027866	1	574	574		24.203	0	1	26832			64910	4698	45733	45798	70140	70140					0.14746916473563942
QVQKMLKR	8	Unmodified	_QVQKMLKR_					0	0	0			REV__ENSG00000088882|ENST00000380605|CPXM1	REV__ENSG00000088882|ENST00000380605|CPXM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2854614257812	2	515.813136	1029.61172	-0.068204	-3.5181E-05	-2.9268	-0.0015097	-2.995	-0.0015449	516.3131940568458	52.616	0.36365	52.426	52.227	52.591	-0.18981					14	8	2	0	0	0	0.027866	1	5484	5484		38.806	0	1	89562	+		64911	20828	45734	45799	70141	70141					0.09809788453321744
QVQKMLKR	8	Unmodified	_QVQKMLKR_					0	0	0			REV__ENSG00000088882|ENST00000380605|CPXM1	REV__ENSG00000088882|ENST00000380605|CPXM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.813136	1029.61172	-0.30023	-0.00015486	2.1584	0.0011133	1.8581	0.00095846	516.3150513394334	52.574	0.10792	52.666	52.602	52.71	0.091938	0.15791	0.0041873	NaN	23.042	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22805	+		64912	20828	45734	45799							0.09809788453321744
QVQLEWDEY	9	Unmodified	_QVQLEWDEY_					0	0	0		GOLGA6C|p.R229W|1|0.16|ENSG00000167195|chr15:75265350-75265350|C/T|missense_variant	GOLGA6C|p.R229W|1|0.16|ENSG00000167195|chr15:75265350-75265350|C/T|missense_variant	GOLGA6C|p.R229W|1|0.16|ENSG00000167195|chr15:75265350-75265350|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5112609863281	3	403.852266	1208.53497	1.3147	0.00053093	0.47458	0.00019166	1.7893	0.00072259	403.85255740257446	32.548	0.46736	32.356	32.029	32.496	-0.19261					15	10	2	0	0	0	0.024515	1	2205	2205		28.081	13.303	1	62400			64913	17684	45735	45800	70142	70142					-0.06095776352799476
QVQLQNLM	8	Unmodified	_QVQLQNLM_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3088073730469	2	487.260402	972.506251	0.57852	0.00028189	-0.82442	-0.00040171	-0.2459	-0.00011981	487.25994924971627	20.854	0.49143	20.658	20.435	20.926	-0.19577					18	9	3	0	0	0	0.027866	1	573	573		19.36	0	1	113220			64914	9658	45736	45801	70143	70143					0.018898275370702322
QVQLQNLM	8	Unmodified	_QVQLQNLM_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.29205322265625	2	487.260402	972.506251	0.24781	0.00012075	3.1855	0.0015522	3.4333	0.0016729	487.2617224119076	81.662	0.46277	81.469	81.171	81.634	-0.19334					18	10	2	0	0	0	0.027866	1	9843	9843		40.573	21.213	1	118750			64915	9658	45736	45801	70144	70144					0.018898275370702322
QVQQERDE	8	Unmodified	_QVQQERDE_					0	0	0		ENST00000564789.5_1_16:90106452-90109750:+|nuORF	ENST00000564789.5_1_16:90106452-90109750:+|nuORF	ENST00000564789.5_1_16:90106452-90109750:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3087158203125	2	516.241252	1030.46795	-0.028871	-1.4905E-05	-3.814	-0.0019689	-3.8428	-0.0019838	516.2388593718524	87.202	0.58962	87.202	86.984	87.573	0					20	13	2	0	0	0	0.027866	1	10998	10998		31.955	9.995	1	65149			64916	16906	45737	45802	70145	70145					-0.046063868438977806
QVQQFPMR	8	Unmodified	_QVQQFPMR_					0	0	0			REV__ENSG00000168779|ENST00000483851|SHOX2;REV__ENSG00000185960|ENST00000686671|SHOX	REV__ENSG00000168779|ENST00000483851|SHOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.78369140625	2	517.266019	1032.51748	-1.4929	-0.0007722	-2.6616	-0.0013768	-4.1545	-0.002149	517.2646028099208	29.243	0.5041	29.243	28.904	29.408	0					15	12	2	0	0	0	0.027866	1	1796	1796		42.474	5.446	1	109710	+		64917	26291;27816	45738	45803	70146	70146					0.0025264963119298045
QVQQFPMR	8	Unmodified	_QVQQFPMR_					0	0	0			REV__ENSG00000168779|ENST00000483851|SHOX2;REV__ENSG00000185960|ENST00000686671|SHOX	REV__ENSG00000168779|ENST00000483851|SHOX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.266019	1032.51748	-0.64483	-0.00033355	-4.4256	-0.0022892	-5.0705	-0.0026228	517.2636207696457	29.155	0.47455	29.158	28.839	29.314	0.0031357	-0.025176	-0.00026428	NaN	33.516	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95994	+		64918	26291;27816	45738	45803							0.0025264963119298045
QVQQPQQVQ	9	Unmodified	_QVQQPQQVQ_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2;ENSG00000198218|ENST00000395443|QRICH1	REV__nc|ENSG00000189079|Q68CP9-3|ARID2;ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000198218|ENST00000395443|QRICH1;REV__ENSG00000198218|ENST00000395443|QRICH1	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.8098754882812	2	541.783087	1081.55162	-0.68049	-0.00036868	1.9106	0.0010351	1.2301	0.00066644	541.7840102214257	28.763	0.71198	28.844	28.493	29.205	0.080812					32	17	3	0	0	0	0.024412	1	1676	1676		17.365	0	1	365430			64919	127;9786;28095;10109;28401	45739	45804	70147	70147					0.014107693237974672
QVQQQPQPY	9	Unmodified	_QVQQQPQPY_					0	0	0			REV__ARPP21|p.S527Y|1|0.35|ENSG00000172995|chr3:35737298-35737298|C/A|missense_variant	REV__ARPP21|p.S527Y|1|0.35|ENSG00000172995|chr3:35737298-35737298|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.332275390625	2	558.277638	1114.54072	0.76592	0.0004276	2.9309	0.0016362	3.6968	0.0020638	558.2791608840503	59.567	0.51617	59.369	59.173	59.689	-0.19742					22	12	3	0	0	0	0.024323	1	6570	6570		63.306	24.5	1	213710	+		64920	19171	45740	45805	70148	70148					-0.01196633050494711
QVQQQPQPY	9	Unmodified	_QVQQQPQPY_					0	0	0			REV__ARPP21|p.S527Y|1|0.35|ENSG00000172995|chr3:35737298-35737298|C/A|missense_variant	REV__ARPP21|p.S527Y|1|0.35|ENSG00000172995|chr3:35737298-35737298|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.33203125	2	558.277638	1114.54072	0.029038	1.6211E-05	3.4103	0.0019039	3.4394	0.0019201	558.2792577584361	59.646	0.40351	59.397	59.13	59.533	-0.24842					18	9	3	0	0	0	0.024381	1	6563	6563		37.159	0	1	199990	+		64921	19171	45740	45805	70149	70149					-0.01196633050494711
QVQRARYEAAN	11	Unmodified	_QVQRARYEAAN_					0	0	0		ENST00000554843.5_1_14:35761682-35780127:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6	ENST00000554843.5_1_14:35761682-35780127:+|nuORF	ENST00000554843.5_1_14:35761682-35780127:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7582702636719	3	435.893459	1304.65855	-0.55939	-0.00024383	-3.3049	-0.0014406	-3.8642	-0.0016844	436.22659189683094	66.105	0.54913	65.892	65.794	66.343	-0.21327					19	13	2	0	0	0	0.024789	1	7628	7628		15.921	4.8239	1	98381			64922	2257	45741	45806	70150	70150					0.018403195382006743
QVQRRAKT	8	Unmodified	_QVQRRAKT_					0	0	0		ENST00000405140.7_2_8:27468087-27468698:-|nuORF	ENST00000405140.7_2_8:27468087-27468698:-|nuORF	ENST00000405140.7_2_8:27468087-27468698:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7818908691406	2	493.796332	985.578111	-0.42182	-0.00020829	2.0464	0.0010105	1.6246	0.00080221	493.79748311928427	65.835	1.013	65.584	65.108	66.121	-0.25112					41	24	3	0	0	0	0.027866	1	7576	7576		24.203	1.1603	1	540860			64923	13709	45742	45807	70151	70151					0.08474503005800216
QVQVGEVMP	9	Unmodified	_QVQVGEVMP_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.76416015625	2	493.75241	985.490267	-0.30692	-0.00015154	-0.48414	-0.00023905	-0.79106	-0.00039059	493.75155645705337	77.647	0.95497	77.662	77.319	78.274	0.014999					35	22	2	0	0	0	0.024294	1	9544	9544		45.952	6.6991	1	140980			64924	1742	45743	45808	70152	70152					-0.0030587869983946803
QVRAAAPAR	9	Unmodified	_QVRAAAPAR_					0	0	0		ENST00000586752.5_1_17:74723041-74729072:+|nuORF;ENST00000588822.1_1_17:74723041-74723314:+|nuORF	ENST00000586752.5_1_17:74723041-74729072:+|nuORF	ENST00000586752.5_1_17:74723041-74729072:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.268798828125	2	470.277775	938.540997	1.1675	0.00054903	2.1367	0.0010049	3.3042	0.0015539	470.27871926005434	78.239	0.74065	78.047	77.723	78.464	-0.1921					26	17	2	0	0	0	0.024436	1	9673	9673		38.806	5.2906	1	233840			64925	17253	45744	45809	70153	70153					0.06926831460020821
QVRALVVAR	9	Unmodified	_QVRALVVAR_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.315185546875	2	506.324725	1010.6349	-0.34555	-0.00017496	2.874	0.0014552	2.5284	0.0012802	506.32595780165235	68.451	0.53664	68.451	68.217	68.754	0					30	13	3	0	0	0	0.024457	1	8250	8250		29.15	2.4566	1	609320	+		64926	23822	45745	45810	70154	70154					0.13000550562321678
QVRALVVAR	9	Unmodified	_QVRALVVAR_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.324725	1010.6349	0.064962	3.2892E-05	2.3494	0.0011896	2.4144	0.0012225	506.32564581788057	68.849	0.54225	68.556	68.171	68.714	-0.29266	0.046068	-0.00025191	NaN	10.265	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567400	+		64927	23822	45745	45810							0.13000550562321678
QVRALVVAR	9	Unmodified	_QVRALVVAR_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.324725	1010.6349	0.28769	0.00014566	2.4233	0.001227	2.711	0.0013726	506.32575482060525	68.505	0.60621	68.524	68.158	68.764	0.018913	0.013779	-0.00017713	NaN	10.265	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692910	+		64928	23822	45745	45810							0.13000550562321678
QVRARSEAGY	10	Unmodified	_QVRARSEAGY_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4;EPHB4|p.A636Pfs*14|1|0.34|ENSG00000196411|chr7:100812959-100812959|C/-|frameshift_variant;EPHB4|p.G516R|1|0.17|ENSG00000196411|chr7:100817234-100817234|C/T|missense_variant	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7489624023438	2	568.793986	1135.57342	-0.2226	-0.00012661	0.306	0.00017405	0.083401	4.7438E-05	568.793692450217	70.162	0.74973	69.895	69.41	70.159	-0.26725					41	17	3	0	0	0	0.03519	1	8114	8114		60.118	14.146	1	510750			64929	9869	45746	45811	70155	70155					0.011055740723804774
QVRARSEAGY	10	Unmodified	_QVRARSEAGY_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4;EPHB4|p.A636Pfs*14|1|0.34|ENSG00000196411|chr7:100812959-100812959|C/-|frameshift_variant;EPHB4|p.G516R|1|0.17|ENSG00000196411|chr7:100817234-100817234|C/T|missense_variant	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7481689453125	2	568.793986	1135.57342	0.10537	5.9933E-05	2.1628	0.0012302	2.2682	0.0012901	569.2959677065322	70.062	0.70416	69.812	69.399	70.103	-0.25063					37	16	3	0	0	0	0.03519	1	8121	8121		39.253	0	1	475650			64930	9869	45746	45811	70156	70156					0.011055740723804774
QVREIEKL	8	Unmodified	_QVREIEKL_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1;nc|ENSG00000164252|Q8N302-3|AGGF1;nc|ENSG00000164252|Q8N302-2|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.33294677734375	2	507.800749	1013.58694	-0.36036	-0.00018299	-0.82389	-0.00041837	-1.1843	-0.00060136	507.80043314684565	41.705	0.36343	41.573	41.352	41.716	-0.1322					13	9	2	0	0	0	0.027866	1	3737	3737		30.318	0	1	179290			64931	7245	45747	45812	70157	70157					0.0806943185162936
QVRFIEMA	8	Unmodified	_QVRFIEMA_					0	0	0			REV__nc|ENSG00000039600|O94993-2|SOX30	REV__nc|ENSG00000039600|O94993-2|SOX30	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.26251220703125	2	497.262945	992.511337	-0.92701	-0.00046097	-0.45996	-0.00022872	-1.387	-0.00068969	497.26266559054324	44.306	1.5544	44.062	43.711	45.266	-0.2444					122	41	5	0	0	0	0.91239	1	4095	4095		50.025	2.3672	1	25420000	+		64932	36448	45748	45813	70158	70158					0.01478131399665017
QVRGVPAP	8	Unmodified	_QVRGVPAP_					0	0	0			REV__ENST00000570069.5_1_16:1828418-1828808:+|nuORF	REV__ENST00000570069.5_1_16:1828418-1828808:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2275085449219	2	412.24287	822.471186	0.13212	5.4466E-05	0.19722	8.1304E-05	0.32935	0.00013577	412.24284198584314	36.76	0.5945	36.567	36.294	36.889	-0.193					24	14	2	0	0	0	0.027866	1	2945	2945		19.36	0	1	477810	+		64933	35385	45749	45814	70159	70159					0.05284952791419073
QVRGVRDRQG	10	Unmodified	_QVRGVRDRQG_					0	0	0		PTPRT|p.T363Hfs*34|1|0.16|ENSG00000196090|chr20:42677933-42677933|G/-|frameshift_variant	PTPRT|p.T363Hfs*34|1|0.16|ENSG00000196090|chr20:42677933-42677933|G/-|frameshift_variant	PTPRT|p.T363Hfs*34|1|0.16|ENSG00000196090|chr20:42677933-42677933|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.8412475585938	2	585.826152	1169.63775	-0.57152	-0.00033481	-4.2221	-0.0024734	-4.7936	-0.0028082	586.3260891746187	53.359	0.45276	53.101	52.882	53.335	-0.25838					34	11	4	0	0	0	0.03519	1	5573	5573		54.722	24.405	1	369110			64934	19010	45750	45815	70160	70160					0.059717739491816246
QVRKYSVSV	9	Unmodified	_QVRKYSVSV_					0	0	0		ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2754516601562	2	533.306198	1064.59784	-0.23564	-0.00012567	-0.45974	-0.00024518	-0.69538	-0.00037085	533.3058214796555	49.21	1.348	49.21	48.83	50.178	0					84	37	3	0	0	0	0.023837	1	5141	5141		74.255	21.956	1	1687000			64935	15907	45751	45816	70161	70161					0.06812834225888764
QVRKYSVSV	9	Unmodified	_QVRKYSVSV_					0	0	0		ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2755737304688	2	533.306198	1064.59784	-0.5037	-0.00026863	-0.20269	-0.00010809	-0.70639	-0.00037672	533.3059338601937	49.42	1.5218	49.267	48.9	50.422	-0.15277					97	42	3	0	0	0	0.023239	1	5147	5147		96.19	16.739	1	1683000			64936	15907	45751	45816	70162	70162					0.06812834225888764
QVRKYSVSV	9	Unmodified	_QVRKYSVSV_					0	0	0		ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	ENST00000515753.1_1_10:69833717-69833930:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2754516601562	2	533.306198	1064.59784	-1.6045	-0.0008557	0.88861	0.0004739	-0.7159	-0.00038179	533.3065347264416	49.102	1.4264	49.177	48.877	50.303	0.074196					90	39	3	0	0	0	0.023239	1	5064	5064		84.916	31.564	1	1972900			64937	15907	45751	45816	70163	70163					0.06812834225888764
QVRLVGKRG	9	Unmodified	_QVRLVGKRG_					0	0	0			REV__ENST00000423007.5_1_9:134378516-134379643:+|nuORF	REV__ENST00000423007.5_1_9:134378516-134379643:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	506.82235	1011.63015	-0.61258	-0.00031047	2.9095	0.0014746	2.297	0.0011641	506.8234952198366	60.499	0.79404	60.285	59.962	60.756	-0.21339					43	20	4	0	0	0	0.024477	1	6995	6995		27.882	10.517	1	2978900	+		64938	32206	45752	45817	70164	70164					0.12479666419562818
QVRPLSLNH	9	Unmodified	_QVRPLSLNH_					0	0	0			REV__ENST00000379066.5_1_2:37479395-37479560:-|nuORF	REV__ENST00000379066.5_1_2:37479395-37479560:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.3040771484375	2	532.30399	1062.59343	0.34343	0.00018281	0.12571	6.6917E-05	0.46914	0.00024973	532.3036676970412	19.529	0.59543	19.329	19.106	19.701	-0.2001					33	11	4	0	0	0	0.74711	1	423	423		42.864	2.2917	1	471830	+		64939	31424	45753	45818	70165	70165					0.064633698030093
QVRPRLGW	8	Unmodified	_QVRPRLGW_					0	0	0			REV__ENST00000372838.8_2_9:131186879-131190605:+|nuORF	REV__ENST00000372838.8_2_9:131186879-131190605:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8109130859375	2	506.295968	1010.57738	-0.97721	-0.00049476	-0.62457	-0.00031622	-1.6018	-0.00081097	506.295361901912	45.817	0.83878	45.615	45.391	46.23	-0.20226					36	22	2	0	0	0	0.027866	1	4327	4327		24.203	0	1	240860	+		64940	31219	45754	45819	70166	70166					0.07251708356739073
QVRQQLGR	8	Unmodified	_QVRQQLGR_					0	0	0			REV__ENSG00000101216|ENST00000370077|GMEB2	REV__ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7793273925781	2	492.788507	983.562461	0.012495	6.1576E-06	3.738	0.001842	3.7505	0.0018482	492.79033726410756	49.755	0.63235	49.604	49.292	49.924	-0.1512					27	16	2	0	0	0	0.027866	1	5163	5163		18.324	4.1873	1	453510	+		64941	21203	45755	45820	70167	70167					0.07002216488751856
QVRQVPLQ	8	Unmodified	_QVRQVPLQ_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2;ENST00000584908.5_1_17:37856482-37868536:+|nuORF	nc|ENSG00000141736|P04626-5|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2879638671875	2	484.287808	966.561064	-0.34127	-0.00016527	0.3632	0.00017589	0.021934	1.0622E-05	484.2879946642471	42.461	1.0764	42.487	41.821	42.897	0.026012					41	30	2	0	0	0	0.53523	1	3863	3863		82.305	2.854	1	3996200			64942	5518	45756	45821	70168	70168					0.07644582399984756
QVRRKGLR	8	Unmodified	_QVRRKGLR_					0	0	0		ENST00000568303.1_1_15:75182833-75183082:+|nuORF	ENST00000568303.1_1_15:75182833-75183082:+|nuORF	ENST00000568303.1_1_15:75182833-75183082:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.8278503417969	2	506.827966	1011.64138	-0.31087	-0.00015756	0.35222	0.00017852	0.041347	2.0956E-05	506.8279680366518	17.497	0.54878	17.29	17.116	17.664	-0.20669					17	10	2	0	0	0	0.96719	1	178	178		42.474	1.9018	1	404520			64943	16976	45757	45822	70169	70169					0.1360248851368624
QVRRLAAS	8	Unmodified	_QVRRLAAS_					0	0	0			REV__ENST00000335783.3_1_6:49431097-49437883:+|nuORF	REV__ENST00000335783.3_1_6:49431097-49437883:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.77227783203125	2	450.772326	899.530098	0.92237	0.00041578	-0.99514	-0.00044858	-0.072766	-3.2801E-05	450.77186599189486	19.73	0.82805	19.53	19.305	20.133	-0.2001					35	16	4	0	0	0	1.0338	2	447	447;461		31.955	1.4512	1	1593200	+		64944	30536	45758	45823	70170;70171	70170					0.07631429085733998
QVSFLVKTE	9	Unmodified	_QVSFLVKTE_					0	0	0		ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENST00000578240.1_1_17:8133610-8135926:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.3048095703125	2	525.795132	1049.57571	0.4453	0.00023414	0.63977	0.00033639	1.0851	0.00057053	525.7953097441919	69.981	0.57056	69.688	69.467	70.038	-0.29292					32	13	3	0	0	0	0.024495	1	8408	8408		26.693	0	1	452410			64945	17127	45759	45824	70172	70172					0.052906097574805244
QVSGAASNL	9	Unmodified	_QVSGAASNL_					0	0	0		ENST00000378723.7_1_X:31200984-31222169:-|nuORF	ENST00000378723.7_1_X:31200984-31222169:-|nuORF	ENST00000378723.7_1_X:31200984-31222169:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.7198791503906	2	423.719424	845.424296	-0.021793	-9.234E-06	0.64161	0.00027186	0.61981	0.00026263	423.7195852058945	39.836	0.71833	39.836	39.562	40.281	0					49	19	4	0	0	0	0.17822	1	3454	3454		93.195	2.8256	1	2936800			64946	13248	45760	45825	70173	70173					-0.004599515503969087
QVSGAASNL	9	Unmodified	_QVSGAASNL_					0	0	0		ENST00000378723.7_1_X:31200984-31222169:-|nuORF	ENST00000378723.7_1_X:31200984-31222169:-|nuORF	ENST00000378723.7_1_X:31200984-31222169:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.71990966796875	2	423.719424	845.424296	-0.55794	-0.00023641	1.6943	0.0007179	1.1364	0.00048149	423.7199295693308	39.866	0.8627	39.89	39.562	40.424	0.023727					54	23	3	0	0	0	0.45795	1	3404	3404		62.107	1.8135	1	2535000			64947	13248	45760	45825	70174	70174					-0.004599515503969087
QVSGAASNL	9	Unmodified	_QVSGAASNL_					0	0	0		ENST00000378723.7_1_X:31200984-31222169:-|nuORF	ENST00000378723.7_1_X:31200984-31222169:-|nuORF	ENST00000378723.7_1_X:31200984-31222169:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	423.719424	845.424296	-0.98727	-0.00041833	1.611	0.00068263	0.62377	0.0002643	423.71999093653716	39.923	0.81112	39.81	39.467	40.278	-0.11222	-0.034956	0.00036855	NaN	93.195	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2571200			64948	13248	45760	45825							-0.004599515503969087
QVSIKEHAD	9	Unmodified	_QVSIKEHAD_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.286865234375	2	513.764363	1025.51417	0.19868	0.00010208	2.3941	0.00123	2.5928	0.0013321	513.765862609479	71.942	0.61216	71.942	71.68	72.292	0					21	15	2	0	0	0	0.024405	1	8732	8732		27.882	0	1	374310	+		64949	22508	45761	45826	70175	70175					0.0024367805817746557
QVSINNDYSEW	11	Unmodified	_QVSINNDYSEW_					0	0	0		nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2646484375	3	452.201846	1353.58371	-0.44825	-0.0002027	2.8811	0.0013029	2.4329	0.0011002	452.5368183956774	32.813	0.76176	32.647	32.355	33.117	-0.16565					20	18	2	0	0	0	0.024742	1	2315	2315		38.714	1.2059	1	119580			64950	2458	45762	45827	70176	70176					-0.07893907783727627
QVSKMKIN	8	Unmodified	_QVSKMKIN_					0	0	0		NMI|p.E153Q|1|0.07|ENSG00000123609|chr2:151275661-151275661|C/G|missense_variant	NMI|p.E153Q|1|0.07|ENSG00000123609|chr2:151275661-151275661|C/G|missense_variant	NMI|p.E153Q|1|0.07|ENSG00000123609|chr2:151275661-151275661|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.2696838378906	2	474.27077	946.526987	4.2927	0.0020359	-4.2381	-0.00201	0.054637	2.5913E-05	474.2686729374976	17.485	0.44611	17.485	17.3	17.746	0					21	8	4	0	0	0	0.71063	1	169	169		66.429	8.618	1	136450			64951	18879	45763	45828	70177	70177					0.051584179167321054
QVSKNLESH	9	Unmodified	_QVSKNLESH_					0	0	0		ENSG00000104921|ENST00000597921|FCER2	ENSG00000104921|ENST00000597921|FCER2	ENSG00000104921|ENST00000597921|FCER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.9920043945312	2	521.269813	1040.52507	0.16588	8.6468E-05	4.4831	0.0023369	4.649	0.0024234	521.2721106842772	54.922	0.29042	54.691	54.565	54.855	-0.23087					14	7	2	0	0	0	0.024506	1	5873	5873		30.504	18.993	1	290410			64952	2619	45764	45829	70178	70178					0.006430804324509154
QVSLALEPLS	10	Unmodified	_QVSLALEPLS_					0	0	0		nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-2|C2CD3;ENST00000415191.6_1_11:73824618-73881837:-|nuORF;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3	nc|ENSG00000168014|Q4AC94-4|C2CD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7725219726562	2	528.800414	1055.58628	-0.9191	-0.00048602	-1.8986	-0.001004	-2.8177	-0.00149	528.7992703816421	28.458	0.46268	28.289	28.048	28.51	-0.16897					22	10	3	0	0	0	0.03519	1	1687	1687		18.262	6.0552	1	164510			64953	7770;18486	45765	45830	70179	70179					0.06070592411901998
QVSLCHPGW	9	Unmodified	_QVSLCHPGW_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.286865234375	2	513.744919	1025.47529	0.19633	0.00010087	-2.9775	-0.0015297	-2.7811	-0.0014288	514.243597167927	72.01	0.22269	72.01	71.831	72.054	0					6	5	2	0	0	0	0.024506	1	8732	8732		23.042	6.3375	1	227640			64954	18389	45766	45831	70180	70180					-0.036433257771932404
QVSLNWQP	8	Unmodified	_QVSLNWQP_					0	0	0		nc|ENSG00000090006|Q8N2S1|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4	nc|ENSG00000090006|Q8N2S1|LTBP4	nc|ENSG00000090006|Q8N2S1|LTBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.77484130859375	2	486.250892	970.48723	-0.67952	-0.00033042	0.8604	0.00041837	0.18087	8.7949E-05	486.25115999447297	23.455	0.44882	23.394	23.152	23.6	-0.060862					24	10	3	0	0	0	0.027866	1	905	905		16.473	10.552	1	135620			64955	18107	45767	45832	70181	70181					0.0008061423766321241
QVSLWLLL	8	Unmodified	_QVSLWLLL_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-2|STK31	REV__nc|ENSG00000196335|Q9BXU1-2|STK31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2540588378906	2	486.299853	970.585153	-0.89051	-0.00043305	-3.6851	-0.0017921	-4.5756	-0.0022251	486.29783022527835	64.622	0.9743	64.36	63.976	64.95	-0.2626					38	25	2	0	0	0	0.027866	1	7623	7623		47.657	0	1	1141500	+		64956	28165	45768	45833	70182	70182					0.09868422833653767
QVSMKSVVL	9	Unmodified	_QVSMKSVVL_					0	0	0			REV__ENST00000318443.9_1_15:74006480-74006705:+|nuORF	REV__ENST00000318443.9_1_15:74006480-74006705:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.74603271484375	2	495.786253	989.557952	-0.60647	-0.00030068	4.1742	0.0020695	3.5677	0.0017688	495.7881715748274	25.807	0.47207	25.78	25.522	25.994	-0.026861					20	10	3	0	0	0	0.024511	1	1265	1265		25.574	6.2141	1	104280	+		64957	30308	45769	45834	70183	70183					0.0627557123096949
QVSMKSVVL	9	Unmodified	_QVSMKSVVL_					0	0	0			REV__ENST00000318443.9_1_15:74006480-74006705:+|nuORF	REV__ENST00000318443.9_1_15:74006480-74006705:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.786253	989.557952	0.27747	0.00013757	3.7326	0.0018506	4.0101	0.0019881	495.7881539382949	25.69	0.63134	25.771	25.418	26.049	0.08009	0.001238	-0.00022491	NaN	37.812	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123970	+		64958	30308	45769	45834							0.0627557123096949
QVSPKIVEI	9	Unmodified	_QVSPKIVEI_					0	0	0		nc|ENSG00000182667|Q9P121-3|NTM;nc|ENSG00000182667|Q9P121|NTM;nc|ENSG00000182667|Q9P121-2|NTM;nc|ENSG00000182667|Q9P121-4|NTM;ENSG00000182667|ENST00000683400|NTM	nc|ENSG00000182667|Q9P121-3|NTM	nc|ENSG00000182667|Q9P121-3|NTM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8055114746094	2	506.8055	1011.59645	-0.26182	-0.00013269	0.045687	2.3155E-05	-0.21613	-0.00010954	506.8054977887969	90.741	0.9531	90.725	90.077	91.03	-0.016708					65	22	4	0	0	0	0.32811	1	11442	11442		71.877	3.0906	1	1770000			64959	9152	45770	45835	70184	70184					0.0911120013714708
QVSSLDSHS	9	Unmodified	_QVSSLDSHS_					0	0	0		nc|ENSG00000119321|Q5T1M5-3|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2922668457031	2	480.225071	958.435589	0.014064	6.7537E-06	-0.77945	-0.00037431	-0.76538	-0.00036756	480.2245420578486	56.153	0.34861	55.937	55.808	56.157	-0.21607					10	8	2	0	0	0	0.024381	1	6099	6099		37.159	0	1	112600			64960	3728	45771	45836	70185	70185					-0.04529174246908951
QVSSSTQMS	9	Unmodified	_QVSSSTQMS_					0	0	0			REV__NFKBIZ|p.P356S|1|0.29|ENSG00000144802|chr3:101853592-101853592|C/T|missense_variant	REV__NFKBIZ|p.P356S|1|0.29|ENSG00000144802|chr3:101853592-101853592|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	477.27984619140625	2	477.713482	953.41241	0.35893	0.00017147	-3.5921	-0.001716	-3.2332	-0.0015445	477.7116343805635	37.528	0.5035	37.335	37.076	37.58	-0.193					27	12	3	0	0	0	0.024319	1	3019	3019		31.53	1.0262	1	526580	+		64961	37279	45772	45837	70186	70186					-0.06615936355865415
QVSVPQGLA	9	Unmodified	_QVSVPQGLA_					0	0	0		ENST00000478337.1_1_22:41980122-41985809:-|nuORF	ENST00000478337.1_1_22:41980122-41985809:-|nuORF	ENST00000478337.1_1_22:41980122-41985809:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2066345214844	2	449.753267	897.491981	-0.43533	-0.00019579	1.0513	0.00047284	0.61599	0.00027704	449.7537271482207	22.993	1.2881	22.808	22.142	23.43	-0.18539					54	28	3	0	0	0	0.024436	1	855	855		30.504	14.862	1	303190			64962	15142	45773	45838	70187	70187					0.039134983804160584
QVTALGRRA	9	Unmodified	_QVTALGRRA_					0	0	0		ENST00000491326.1_1_X:99986404-99987090:-|nuORF	ENST00000491326.1_1_X:99986404-99987090:-|nuORF	ENST00000491326.1_1_X:99986404-99987090:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.28155517578125	2	486.290882	970.567212	0.21209	0.00010314	-2.1788	-0.0010595	-1.9667	-0.00095641	486.292223059759	80.534	0.29279	80.388	80.158	80.451	-0.146					10	6	2	0	0	0	0.024381	1	9650	9650		55.504	9.5523	1	33808			64963	15457	45774	45839	70188	70188					0.08075100631504029
QVTALQQKI	9	Unmodified	_QVTALQQKI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.8097534179688	2	514.808574	1027.60259	-1.0112	-0.00052059	0.0137	7.0528E-06	-0.99753	-0.00051354	514.8083197415872	43.384	0.87193	43.384	43.15	44.022	0					58	23	4	0	0	0	0.23085	1	4066	4066		84.916	23.944	1	3496900			64964	1175	45775	45840	70189	70189					0.08989718368638933
QVTALQQKI	9	Unmodified	_QVTALQQKI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8097534179688	2	514.808574	1027.60259	-0.76479	-0.00039372	-0.1371	-7.0581E-05	-0.90189	-0.0004643	514.8081962007205	43.535	0.86215	43.393	43.171	44.033	-0.14239					60	23	4	0	0	0	0.2508	1	4073	4073		82.241	15.811	1	2804200			64965	1175	45775	45840	70190	70190					0.08989718368638933
QVTALQQKI	9	Unmodified	_QVTALQQKI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.809814453125	2	514.808574	1027.60259	-0.26535	-0.0001366	-0.4863	-0.00025035	-0.75165	-0.00038696	514.8080569257132	43.435	0.68626	43.466	43.267	43.953	0.030823					56	18	4	0	0	0	0.42604	1	4022	4022		64.207	12.872	1	3213500			64966	1175	45775	45840	70191	70191					0.08989718368638933
QVTCVTYNW	9	Unmodified	_QVTCVTYNW_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2769775390625	2	557.255317	1112.49608	0.12072	6.727E-05	-3.2535	-0.001813	-3.1328	-0.0017458	557.7549864456703	77.772	0.24836	77.561	77.376	77.624	-0.21087					7	5	2	0	0	0	0.024447	1	9568	9568		32.812	9.2897	1	55365			64967	5327	45776	45841	70192	70192					-0.055667801881782
QVTDTYML	8	Unmodified	_QVTDTYML_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2;REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7322692871094	2	485.731143	969.447733	-0.0033388	-1.6217E-06	0.23249	0.00011293	0.22915	0.0001113	485.7310522037201	72.799	1.0155	72.534	72.042	73.058	-0.26479					55	23	4	0	0	0	0.71833	1	8557	8557		65.803	2.4969	1	1340000	+		64968	24036;36719	45777	45842	70193	70193					-0.03821273828077665
QVTIKKLRKLK	11	Unmodified	_QVTIKKLRKLK_					0	0	0		RASEF|p.E257K|1|0.27|ENSG00000165105|chr9:83012508-83012508|C/T|missense_variant	RASEF|p.E257K|1|0.27|ENSG00000165105|chr9:83012508-83012508|C/T|missense_variant	RASEF|p.E257K|1|0.27|ENSG00000165105|chr9:83012508-83012508|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2477722167969	3	452.313406	1353.91839	-0.18991	-8.59E-05	-4.362	-0.001973	-4.5519	-0.0020589	452.3126188083347	33.439	0.30344	33.439	33.251	33.554	0					10	8	2	0	0	0	0.024846	1	2399	2399		11.932	2.2862	1	162190			64969	19029	45778	45843	70194	70194					0.25558716887098853
QVTLLRPHR	9	Unmodified	_QVTLLRPHR_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3399658203125	2	560.340907	1118.66726	0.39378	0.00022065	-1.7563	-0.00098414	-1.3625	-0.00076349	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	0.96322	1	12733	12733		27.882	5.9224	1	14365000	+		64970	23614	45779	45844	70195	70195					0.11267337965296065
QVTLRNKPK	9	Unmodified	_QVTLRNKPK_					0	0	0		nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3;ENSG00000178385|ENST00000427836|PLEKHM3	nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2654418945312	2	542.33529	1082.65603	-0.96173	-0.00052158	0.11069	6.0029E-05	-0.85105	-0.00046155	542.3353407243914	53.048	0.90371	53.143	52.868	53.771	0.095669					42	24	3	0	0	0	0.024495	1	5724	5724		26.693	0	1	3787500			64971	8809	45780	45845	70196	70196					0.11800515871163952
QVTLTAKTSCS	11	Unmodified	_QVTLTAKTSCS_					0	0	0		POPDC2|p.E206K|1|0.1|ENSG00000121577|chr3:119648653-119648653|C/T|missense_variant	POPDC2|p.E206K|1|0.1|ENSG00000121577|chr3:119648653-119648653|C/T|missense_variant	POPDC2|p.E206K|1|0.1|ENSG00000121577|chr3:119648653-119648653|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7777099609375	2	569.792263	1137.56997	-0.064959	-3.7013E-05	2.1872	0.0012463	2.1223	0.0012093	569.7935730090347	25.232	0.1676	25.061	24.955	25.122	-0.17078					6	3	2	0	0	0	0.024745	1	1179	1179		27.047	0	1	32031			64972	18978	45781	45846	70197	70197					0.0066914318349518
QVTMTVQVS	9	Unmodified	_QVTMTVQVS_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;ENST00000514623.1_1_3:123428573-123453020:-|nuORF;nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2740173339844	2	496.757692	991.500831	-0.68427	-0.00033991	-2.0138	-0.0010004	-2.6981	-0.0013403	496.7565657882378	39.901	0.60432	39.924	39.671	40.275	0.023727					27	16	2	0	0	0	0.024025	1	3458	3458		62.107	5.3864	1	286490			64973	1308	45782	45847	70198	70198					0.004741039546047432
QVTMTVQVS	9	Unmodified	_QVTMTVQVS_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;ENST00000514623.1_1_3:123428573-123453020:-|nuORF;nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.757692	991.500831	0.60179	0.00029894	-4.2057	-0.0020892	-3.6039	-0.0017903	496.75557981999395	39.8	0.49287	39.8	39.495	39.988	0	0.0010804	-0.0011102	NaN	36.447	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244780			64974	1308	45782	45847							0.004741039546047432
QVTNQTMAL	9	Unmodified	_QVTNQTMAL_					0	0	0			REV__ENST00000490310.1_1_1:149902255-149902390:-|nuORF	REV__ENST00000490310.1_1_1:149902255-149902390:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2540283203125	2	503.255317	1004.49608	-0.80659	-0.00040592	-2.9439	-0.0014815	-3.7505	-0.0018874	503.25388626320927	44.615	1.7053	44.615	44.281	45.986	0					129	49	4	0	0	0	0.72494	1	4275	4275		44.377	8.7589	1	4842200	+		64975	33039	45783	45848	70199	70199					-0.005987801881701671
QVTPGEVSI	9	Unmodified	_QVTPGEVSI_					0	0	0		ENST00000477859.1_1_7:20406589-20418951:+|nuORF;ENSG00000105855|ENST00000222573|ITGB8	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENST00000477859.1_1_7:20406589-20418951:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.2509765625	2	465.250557	928.486562	-1.325	-0.00061645	1.4117	0.0006568	0.086727	4.035E-05	465.25107455896136	65.371	0.82255	65.168	64.858	65.68	-0.20326					48	19	3	0	0	0	0.31037	1	7471	7471		74.255	4.6274	1	1233500			64976	2729	45784	45849	70200	70200					0.01945774797957256
QVTPILPTV	9	Unmodified	_QVTPILPTV_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.29510498046875	2	484.294768	966.574983	0.9232	0.0004471	-0.98318	-0.00047615	-0.059989	-2.9052E-05	484.29428972571293	85.173	0.99649	85.173	84.792	85.789	0					66	23	4	0	0	0	0.03849	1	10679	10679		134.81	16.068	1	1900400	+		64977	34998	45785	45850	70201	70201					0.09035815108427414
QVTPILPTV	9	Unmodified	_QVTPILPTV_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	484.294768	966.574983	-0.85399	-0.00041358	0.78174	0.00037859	-0.072255	-3.4993E-05	484.29513721707673	85.115	1.0742	85.141	84.788	85.862	0.025536	0.10948	0.0010133	NaN	134.81	70	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2059500	+		64978	34998	45785	45850							0.09035815108427414
QVTPILPTV	9	Unmodified	_QVTPILPTV_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.294768	966.574983	0.54485	0.00026387	-0.30907	-0.00014968	0.23578	0.00011419	484.294588556103	85.103	0.66319	84.9	84.63	85.293	-0.20329	-0.13162	-4.3273E-05	NaN	134.81	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374220	+		64979	34998	45785	45850							0.09035815108427414
QVTPILPTV	9	Unmodified	_QVTPILPTV_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.294768	966.574983	0.76274	0.00036939	-0.63447	-0.00030727	0.12827	6.2119E-05	484.2944421211771	85.07	0.70268	84.918	84.664	85.367	-0.15124	-0.11277	-0.00035846	NaN	134.81	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332520	+		64980	34998	45785	45850							0.09035815108427414
QVTPILPTV	9	Unmodified	_QVTPILPTV_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.294768	966.574983	0.76251	0.00036928	-0.57533	-0.00027863	0.18718	9.065E-05	484.29436607822015	85.112	0.66336	84.974	84.62	85.284	-0.13752	-0.057149	-0.00030117	NaN	134.81	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349110	+		64981	34998	45785	45850							0.09035815108427414
QVTRLVESP	9	Unmodified	_QVTRLVESP_					0	0	0			REV__nc|ENSG00000120690|P32519-2|ELF1	REV__nc|ENSG00000120690|P32519-2|ELF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2635498046875	2	514.790381	1027.56621	0.25933	0.0001335	-0.84376	-0.00043436	-0.58443	-0.00030086	514.789535848612	48.024	0.55868	47.837	47.635	48.193	-0.18684					26	14	3	0	0	0	0.024541	1	4728	4728		9.1829	0	1	450830	+		64982	22548	45786	45851	70202	70202					0.05352841471949432
QVTRNNYYLNI	11	Unmodified	_QVTRNNYYLNI_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.7846374511719	3	466.577247	1396.70991	0.028454	1.3276E-05	-0.5057	-0.00023595	-0.47725	-0.00022267	466.57693126796397	42.414	0.64498	42.291	41.998	42.643	-0.12299					46	16	4	0	0	0	0.024768	1	3820	3820		36.528	0	1	975620	+		64983	22933	45787	45852	70203	70203					0.027426435122606563
QVTRNNYYLNI	11	Unmodified	_QVTRNNYYLNI_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.78436279296875	3	466.577247	1396.70991	-0.29896	-0.00013949	-0.12953	-6.0434E-05	-0.42849	-0.00019992	466.57710711274416	42.565	0.68622	42.333	42.079	42.765	-0.23186					53	17	4	0	0	0	0.024789	1	3819	3819		43.419	0	1	1288400	+		64984	22933	45787	45852	70204	70204					0.027426435122606563
QVTRRSLGYA	10	Unmodified	_QVTRRSLGYA_					0	0	0		ENSG00000254535|ENST00000421491|PABPC4L	ENSG00000254535|ENST00000421491|PABPC4L	ENSG00000254535|ENST00000421491|PABPC4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8200073242188	2	575.820004	1149.62546	1.0355	0.00059627	-1.1753	-0.00067678	-0.13983	-8.0514E-05	575.8191501342106	18.036	0.64489	17.879	17.405	18.05	-0.15637					23	12	3	0	0	0	1.1267	1	254	254		29.15	6.1071	1	137290			64985	10879	45788	45853	70205	70205					0.056627374861591306
QVTSAVVV	8	Unmodified	_QVTSAVVV_					0	0	0			REV__ENSG00000117139|ENST00000367265|KDM5B	REV__ENSG00000117139|ENST00000367265|KDM5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.894775390625	2	401.737086	801.459619	0.92787	0.00037276	1.8472	0.00074209	2.7751	0.0011148	401.73747439363757	26.198	0.66644	26.198	25.823	26.489	0					26	15	2	0	0	0	0.027866	1	1350	1350		42.474	0	1	83803	+		64986	22327	45789	45854	70206	70206					0.050947109774256205
QVTSEGDHL	9	Unmodified	_QVTSEGDHL_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7980651855469	2	493.232896	984.451239	-0.03252	-1.604E-05	-1.2346	-0.00060893	-1.2671	-0.00062497	493.23189765212084	52.71	0.44317	52.521	52.188	52.631	-0.18982					24	10	3	0	0	0	0.024436	1	5472	5472		23.042	6.5693	1	278300	+		64987	23757	45790	45855	70207	70207					-0.04160887729847218
QVTSEGDHL	9	Unmodified	_QVTSEGDHL_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.232896	984.451239	-0.7397	-0.00036484	-1.3549	-0.0006683	-2.0946	-0.0010331	493.2321975443984	52.603	0.47695	52.476	52.195	52.672	-0.12705	-0.050717	0.00050446	NaN	16.473	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362190	+		64988	23757	45790	45855							-0.04160887729847218
QVTTVKPQR	9	Unmodified	_QVTTVKPQR_					0	0	0			REV__ENST00000450133.5_1_7:32957979-32961041:-|nuORF	REV__ENST00000450133.5_1_7:32957979-32961041:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.801513671875	2	528.811648	1055.60874	-0.71242	-0.00037674	1.3664	0.00072256	0.65397	0.00034582	529.3138638601012	40.32	0.77185	40.343	40.162	40.934	0.023006					43	21	4	0	0	0	0.024405	1	3572	3572		44.117	5.3107	1	497230	+		64989	32692	45791	45856	70208	70208					0.08316236600171578
QVTVAIAKAT	10	Unmodified	_QVTVAIAKAT_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2742614746094	2	501.303124	1000.5917	-0.77503	-0.00038852	0.85257	0.0004274	0.077541	3.8872E-05	501.3033744796274	34.825	0.47097	34.638	34.402	34.873	-0.18675					22	11	3	0	0	0	0.03519	1	2566	2566		12.812	0	1	332520	+		64990	23724	45792	45857	70209	70209					0.09142315994370165
QVTVHRDTL	9	Unmodified	_QVTVHRDTL_					0	0	0		nc|ENSG00000171790|Q499Z3-4|SLFNL1;nc|ENSG00000171790|Q499Z3-2|SLFNL1;nc|ENSG00000171790|Q499Z3-3|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.768310546875	2	534.793455	1067.57236	-0.96678	-0.00051703	-4.387	-0.0023461	-5.3537	-0.0028631	534.7903460247966	36.657	1.9079	36.601	35.514	37.422	-0.056194					88	51	3	0	0	0	0.023837	1	2942	2942		64.207	35.037	1	492460			64991	18516	45793	45858	70210	70210					0.04127359703466027
QVTVHRDTL	9	Unmodified	_QVTVHRDTL_					0	0	0		nc|ENSG00000171790|Q499Z3-4|SLFNL1;nc|ENSG00000171790|Q499Z3-2|SLFNL1;nc|ENSG00000171790|Q499Z3-3|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7683715820312	2	534.793455	1067.57236	-0.83574	-0.00044695	-4.3502	-0.0023265	-5.186	-0.0027734	534.7908116829046	36.751	2.0441	36.789	35.816	37.86	0.038044					115	55	3	0	0	0	0.023837	1	2921	2921		45.972	0	1	465810			64992	18516	45793	45858	70211	70211					0.04127359703466027
QVTVHRDTL	9	Unmodified	_QVTVHRDTL_					0	0	0		nc|ENSG00000171790|Q499Z3-4|SLFNL1;nc|ENSG00000171790|Q499Z3-2|SLFNL1;nc|ENSG00000171790|Q499Z3-3|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.793455	1067.57236	1.0152	0.00054291	-5.1373	-0.0027474	-4.1221	-0.0022045	534.7903346570446	36.454	0.89381	36.256	35.843	36.736	-0.19829	-0.20655	-0.0010424	NaN	35.152	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196610			64993	18516	45793	45858							0.04127359703466027
QVTVKQDH	8	Unmodified	_QVTVKQDH_					0	0	0		ENST00000525259.1_1_11:16736420-16761040:-|nuORF	ENST00000525259.1_1_11:16736420-16761040:-|nuORF	ENST00000525259.1_1_11:16736420-16761040:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.30377197265625	2	477.753798	953.493044	0.17168	8.2021E-05	0.90353	0.00043166	1.0752	0.00051369	477.75388754766334	19.533	0.97583	19.414	18.756	19.731	-0.11872					43	19	4	0	0	0	0.027866	1	344	344		31.955	0	1	194280			64994	16087	45794	45859	70212	70212					0.014437127493238222
QVTVLRAR	8	Unmodified	_QVTVLRAR_					0	0	0		nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5;RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.7938232421875	2	471.795801	941.577048	1.5565	0.00073437	-1.5994	-0.00075458	-0.042836	-2.021E-05	471.79502976701446	19.319	0.74209	19.085	18.632	19.374	-0.23345					35	14	4	0	0	0	0.96769	1	383	383		42.396	1.8235	1	266520			64995	4915	45795	45860	70213	70213					0.1039228863688777
QVTYSSPSGR	10	Unmodified	_QVTYSSPSGR_					0	0	0			REV__MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant	REV__MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.3340454101562	2	541.26727	1080.51999	-0.048014	-2.5988E-05	-3.0119	-0.0016303	-3.0599	-0.0016562	541.265313582723	79.383	0.37317	79.163	78.954	79.327	-0.21923					10	8	2	0	0	0	0.03519	1	9473	9473		54.722	13.944	1	85102	+		64996	29215	45796	45861	70214	70214					-0.017052234301445424
QVVCSLLSV	9	Unmodified	_QVVCSLLSV_					0	0	0		ENST00000360204.5_1_19:20959123-20959168:+|nuORF	ENST00000360204.5_1_19:20959123-20959168:+|nuORF	ENST00000360204.5_1_19:20959123-20959168:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2603454589844	2	474.265153	946.515753	0.048737	2.3114E-05	0.46517	0.00022061	0.51391	0.00024373	474.2652175266591	43.304	1.0837	43.165	42.702	43.786	-0.13929					51	29	2	0	0	0	0.024323	1	4106	4106		27.882	0	1	376340			64997	12757	45797	45862	70215	70215					0.04035595822585947
QVVDTVVKVF	10	Unmodified	_QVVDTVVKVF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3301391601562	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0275	1	11082	11082		42.338	6.7198	1	4298500			64998	3656	45798	45863	70216	70216					0.0881915819995811
QVVDTVVKVF	10	Unmodified	_QVVDTVVKVF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.32958984375	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0719	1	11600	11600		36.447	2.5251	1	14057000			64999	3656	45798	45863	70217	70217					0.0881915819995811
QVVDTVVKVF	10	Unmodified	_QVVDTVVKVF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3296508789062	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.0616	1	11248	11248		37.812	2.6595	1	4134200			65000	3656	45798	45863	70218	70218					0.0881915819995811
QVVDTVVKVF	10	Unmodified	_QVVDTVVKVF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.329833984375	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.1088	1	11393	11393		31.53	5.4664	1	17705000			65001	3656	45798	45863	70219	70219					0.0881915819995811
QVVDTVVKVF	10	Unmodified	_QVVDTVVKVF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3302612304688	2	567.331882	1132.64921	-1.316	-0.00074659	-2.1119	-0.0011981	-3.4278	-0.0019447	567.3305774108686	93.251	0.61166	93.111	92.829	93.441	-0.13995					35	13	3	0	0	0	1.0616	1	11447	11447		37.812	1.3648	1	839360			65002	3656	45798	45863	70220	70220					0.0881915819995811
QVVDTVVKVF	10	Unmodified	_QVVDTVVKVF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3291625976562	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0393	1	11358	11358		40.778	1.5253	1	19210000			65003	3656	45798	45863	70221	70221					0.0881915819995811
QVVESHVK	8	Unmodified	_QVVESHVK_					0	0	0			REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.79827880859375	2	463.258717	924.50288	0.10171	4.7116E-05	-0.116	-5.374E-05	-0.014298	-6.6236E-06	463.2584211347605	41.178	0.81481	41.178	40.908	41.722	0					36	22	3	0	0	0	0.027866	1	3766	3766		12.207	0	1	432650	+		65004	36447	45799	45864	70222	70222					0.037609007547075635
QVVFEALSTI	10	Unmodified	_QVVFEALSTI_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.79296875	2	553.808239	1105.60193	-0.063303	-3.5058E-05	0.69153	0.00038297	0.62822	0.00034792	553.8083783270408	53.302	0.41589	53.175	52.913	53.329	-0.12705					24	10	4	0	0	0	0.03519	1	5558	5558		18.262	0	1	744120	+		65005	23835	45800	45865	70223	70223					0.05334878928942999
QVVFEAYPP	9	Unmodified	_QVVFEAYPP_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2506103515625	2	525.26875	1048.52295	-0.31534	-0.00016564	-2.4675	-0.0012961	-2.7829	-0.0014617	525.7701788424149	61.929	0.72665	61.715	61.125	61.852	-0.21375					30	17	3	0	0	0	0.024262	1	6962	6962		57.811	26.281	1	85259			65006	3322	45801	45866	70224	70224					0.00062651694656779
QVVFEAYPP	9	Unmodified	_QVVFEAYPP_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.26875	1048.52295	-1.4709	-0.00077263	-6.6594	-0.003498	-8.1303	-0.0042706	525.2656295053782	61.973	0.32457	61.973	61.72	62.044	0	0.071042	0.0015487	NaN	57.811	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130450			65007	3322	45801	45866							0.00062651694656779
QVVFEAYPP	9	Unmodified	_QVVFEAYPP_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.26875	1048.52295	-0.63354	-0.00033278	-9.3175	-0.0048942	-9.9511	-0.005227	525.2639597329943	62.168	0.35668	61.942	61.727	62.084	-0.22663	0.039986	-0.0012438	NaN	57.811	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143460			65008	3322	45801	45866							0.00062651694656779
QVVFEAYPP	9	Unmodified	_QVVFEAYPP_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.26875	1048.52295	-0.5891	-0.00030943	-8.6373	-0.0045369	-9.2264	-0.0048464	525.2640923367491	61.915	0.31742	61.978	61.735	62.052	0.062763	0.075828	-0.00052925	NaN	57.811	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162240			65009	3322	45801	45866							0.00062651694656779
QVVGLRGAGG	10	Unmodified	_QVVGLRGAGG_					0	0	0		ENST00000482576.1_1_22:24217352-24224826:+|nuORF	ENST00000482576.1_1_22:24217352-24224826:+|nuORF	ENST00000482576.1_1_22:24217352-24224826:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2641906738281	2	457.264333	912.514114	0.3516	0.00016077	-0.33891	-0.00015497	0.012689	5.8023E-06	457.2640675136426	78.861	1.8585	78.607	77.998	79.857	-0.25471					112	43	5	0	0	0	1.089	1	9419	9419		34.173	9.9698	1	1133100			65010	15261	45802	45867	70225	70225					0.05435722848858404
QVVKDLVKE	9	Unmodified	_QVVKDLVKE_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.278076171875	2	529.316232	1056.61791	-0.20649	-0.0001093	0.44809	0.00023718	0.24161	0.00012789	529.3167534584834	69.508	0.65798	69.257	68.908	69.566	-0.25063					33	15	3	0	0	0	0.024457	1	8107	8107		29.15	7.1897	1	497040	+		65011	24071	45803	45868	70226	70226					0.09186585165844008
QVVKGLQQG	9	Unmodified	_QVVKGLQQG_					0	0	0			REV__ENST00000495104.1_1_4:165841962-165842070:-|nuORF	REV__ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.769287109375	2	478.779816	955.545079	-0.31844	-0.00015246	2.7788	0.0013304	2.4603	0.001178	478.78091112239207	41.317	0.50762	41.089	40.847	41.355	-0.2278					19	12	2	0	0	0	0.024487	1	3606	3606		24.203	0	1	194000	+		65012	33792	45804	45869	70227	70227					0.06552876163095789
QVVKKLVQ	8	Unmodified	_QVVKKLVQ_					0	0	0			REV__ENST00000494465.5_1_2:242592964-242606150:+|nuORF	REV__ENST00000494465.5_1_2:242592964-242606150:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.3099670410156	2	471.310752	940.606951	0.92125	0.0004342	-0.59013	-0.00027813	0.33113	0.00015606	471.31011388158834	19.682	0.54363	19.448	19.226	19.769	-0.23345					21	10	3	0	0	0	1.043	1	426	426		30.504	0	1	272210	+		65013	33784	45805	45870	70228	70228					0.13427227582235446
QVVKLHKM	8	Unmodified	_QVVKLHKM_					0	0	0		ENST00000472109.1_1_17:42797561-42797837:-|nuORF;ENST00000445338.1_1_10:13633913-13634195:-|nuORF;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENST00000472109.1_1_17:42797561-42797837:-|nuORF	ENST00000472109.1_1_17:42797561-42797837:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.7955322265625	2	491.796955	981.579357	-0.63497	-0.00031228	-1.5275	-0.0007512	-2.1624	-0.0010635	491.79600483017987	47.5	1.5976	47.404	46.295	47.893	-0.096649					123	43	5	0	0	0	1.0338	1	4688	4688		31.955	2.1133	1	5430200			65014	14441	45806	45871	70229	70229					0.08783001050335315
QVVKLHKM	8	Unmodified	_QVVKLHKM_					0	0	0		ENST00000472109.1_1_17:42797561-42797837:-|nuORF;ENST00000445338.1_1_10:13633913-13634195:-|nuORF;ENST00000454924.1_1_7:63602236-63602701:-|nuORF	ENST00000472109.1_1_17:42797561-42797837:-|nuORF	ENST00000472109.1_1_17:42797561-42797837:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.79595947265625	2	491.796955	981.579357	0.13012	6.3993E-05	-2.5704	-0.0012641	-2.4403	-0.0012001	491.79557204432604	48.3	5.1977	48.113	47.902	53.099	-0.18684					252	137	4	0	0	0	1.0338	1	4795	4795		31.955	3.7006	1	3829000			65015	14441	45806	45871	70230	70230					0.08783001050335315
QVVKLNASDL	10	Unmodified	_QVVKLNASDL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3497924804688	2	543.811313	1085.60807	-1.3648	-0.00074222	1.4016	0.00076219	0.036728	1.9973E-05	543.8118917961705	25.623	0.53384	25.589	25.275	25.809	-0.034397					16	12	2	0	0	0	0.03519	1	1247	1247		87.696	8.2454	1	78593			65016	2521	45807	45872	70231	70231					0.06869397160448898
QVVKLNASDL	10	Unmodified	_QVVKLNASDL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.811313	1085.60807	-1.2804	-0.00069631	1.6621	0.00090385	0.38165	0.00020754	543.8118492117051	25.573	0.45524	25.573	25.324	25.779	0	-0.0077838	0.00019973	NaN	87.696	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67805			65017	2521	45807	45872							0.06869397160448898
QVVKLRTW	8	Unmodified	_QVVKLRTW_					0	0	0		ENSG00000205442|ENST00000543880|IZUMO3	ENSG00000205442|ENST00000543880|IZUMO3	ENSG00000205442|ENST00000543880|IZUMO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7966918945312	2	515.313826	1028.6131	-1.0134	-0.0005222	0.18405	9.4841E-05	-0.82932	-0.00042736	515.3137740100975	91.973	0.62354	91.973	91.554	92.178	0					30	14	3	0	0	0	0.027866	1	11621	11621		30.504	9.5567	1	95992			65018	10429	45808	45873	70232	70232					0.09993745813744681
QVVKRMRTN	9	Unmodified	_QVVKRMRTN_					0	0	0			REV__nc|ENSG00000186628|A1L4K1-2|FSD2	REV__nc|ENSG00000186628|A1L4K1-2|FSD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.3111572265625	2	566.324399	1130.63425	-0.56462	-0.00031976	0.36954	0.00020928	-0.19509	-0.00011048	566.3244483123684	56.149	0.43171	55.993	55.783	56.215	-0.15656					16	10	2	0	0	0	0.024541	1	6097	6097		14.137	7.4016	1	200000	+		65019	27871	45809	45874	70233	70233					0.07415387850960542
QVVLKDEVA	9	Unmodified	_QVVLKDEVA_					0	0	0		CCDC146|p.Y913*|1|0.08|ENSG00000135205|chr7:77294736-77294742|ACATCCC/-|frameshift_variant;ENSG00000135205|ENST00000285871|CCDC146;ENST00000461882.1_1_7:76871694-76888407:+|nuORF	CCDC146|p.Y913*|1|0.08|ENSG00000135205|chr7:77294736-77294742|ACATCCC/-|frameshift_variant	CCDC146|p.Y913*|1|0.08|ENSG00000135205|chr7:77294736-77294742|ACATCCC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2715148925781	2	500.787307	999.560061	-0.35375	-0.00017715	-1.209	-0.00060544	-1.5627	-0.0007826	500.7866648640782	22.089	0.27881	22.089	22.012	22.291	0					7	5	2	0	0	0	0.024374	1	741	741		49.442	0	1	32891			65020	225	45810	45875	70234	70234					0.060263232404167866
QVVLQHRA	8	Unmodified	_QVVLQHRA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.7809143066406	2	475.780151	949.545748	0.21266	0.00010118	4.4668	0.0021252	4.6795	0.0022264	475.7809298596252	102.09	1.1661	101.96	101.07	102.23	-0.12666					38	28	2	0	0	0	0.027866	1	12683	12683		12.959	0	1	126380	+		65021	26001	45811	45876	70235	70235					0.06895715602797736
QVVLSSIDI	9	Unmodified	_QVVLSSIDI_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7901306152344	2	487.281857	972.549162	0.33302	0.00016228	0.6418	0.00031274	0.97482	0.00047501	487.28154074538116	80.817	1.9101	80.611	80.092	82.002	-0.20633					105	45	4	0	0	0	0.16468	1	9774	9774		96.19	13.885	1	6440700	+		65022	25072	45812	45877	70236	70236					0.06178920866148019
QVVNLPLVE	9	Unmodified	_QVVNLPLVE_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.792724609375	2	505.797675	1009.5808	0.31872	0.00016121	0.15153	7.6642E-05	0.47025	0.00023785	505.79758083536325	76.099	0.84321	76.11	75.645	76.488	0.011635					31	21	2	0	0	0	0.024323	1	9249	9249		35.618	0	1	665560		+	65023	497	45813	45878	70237	70237					0.07638913620087351
QVVNLPLVE	9	Unmodified	_QVVNLPLVE_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.797675	1009.5808	-0.21542	-0.00010896	0.34733	0.00017568	0.13191	6.672E-05	505.79760290326226	76.316	0.6009	76.048	75.779	76.38	-0.26806	-0.0050741	0.00016253	NaN	35.618	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415650		+	65024	497	45813	45878							0.07638913620087351
QVVNLPLVE	9	Unmodified	_QVVNLPLVE_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.797675	1009.5808	-0.15432	-7.8056E-05	0.25958	0.0001313	0.10526	5.324E-05	505.7976467809418	76.266	0.63942	76.014	75.717	76.356	-0.25163	-0.039027	7.376E-05	NaN	35.618	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372020		+	65025	497	45813	45878							0.07638913620087351
QVVNLPLVE	9	Unmodified	_QVVNLPLVE_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.797675	1009.5808	-0.19029	-9.6246E-05	-0.24695	-0.00012491	-0.43723	-0.00022115	505.7975862833926	76.133	0.98557	75.965	75.666	76.652	-0.16853	-0.088387	-0.00043864	NaN	35.618	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381610		+	65026	497	45813	45878							0.07638913620087351
QVVPKPINP	9	Unmodified	_QVVPKPINP_					0	0	0		LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54;nc|ENSG00000189308|Q6MZP7-2|LIN54	LIN54-SEC31A|4|fusion;nc|ENSG00000189308|Q6MZP7-2|LIN54	LIN54-SEC31A|4|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.29754638671875	2	496.300384	990.586216	-0.23273	-0.0001155	0.43641	0.00021659	0.20368	0.00010109	496.30051666222215	69.758	0.49008	69.771	69.503	69.993	0.012421					19	11	2	0	0	0	0.024405	1	8323	8323		35.618	0	1	194540			65027	17915;18615	45814	45879	70238	70238					0.09054637202541471
QVVPKPINP	9	Unmodified	_QVVPKPINP_					0	0	0		LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54;nc|ENSG00000189308|Q6MZP7-2|LIN54	LIN54-SEC31A|4|fusion;nc|ENSG00000189308|Q6MZP7-2|LIN54	LIN54-SEC31A|4|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.300384	990.586216	-0.57819	-0.00028696	0.55255	0.00027423	-0.025638	-1.2724E-05	496.30066965435054	69.977	0.54487	69.71	69.536	70.08	-0.26725	0.021172	0.00059993	NaN	27.882	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82827			65028	17915;18615	45814	45879							0.09054637202541471
QVVPKPINP	9	Unmodified	_QVVPKPINP_					0	0	0		LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54;nc|ENSG00000189308|Q6MZP7-2|LIN54	LIN54-SEC31A|4|fusion;nc|ENSG00000189308|Q6MZP7-2|LIN54	LIN54-SEC31A|4|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.300384	990.586216	0.053614	2.6609E-05	-0.29666	-0.00014723	-0.24304	-0.00012062	496.30013207612745	69.862	0.45876	69.611	69.441	69.9	-0.25063	-0.077318	-0.00024299	NaN	27.882	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137420			65029	17915;18615	45814	45879							0.09054637202541471
QVVQPKKE	8	Unmodified	_QVVQPKKE_					0	0	0			REV__nc|ENSG00000175216|Q14008-2|CKAP5	REV__nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7919006347656	2	478.282192	954.549831	-0.12331	-5.8976E-05	-0.98545	-0.00047132	-1.1088	-0.0005303	478.2815428698632	48.75	0.7376	48.568	48.339	49.076	-0.18206					28	19	2	0	0	0	0.027866	1	4915	4915		29.15	10.825	1	346200	+		65030	26930	45815	45880	70239	70239					0.0707376030584328
QVVQSLNQTY	10	Unmodified	_QVVQSLNQTY_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3431396484375	2	590.303852	1178.59315	-0.4105	-0.00024232	2.7014	0.0015946	2.2909	0.0013523	590.8076076961751	89.832	0.21705	89.694	89.532	89.749	-0.13824					7	4	2	0	0	0	0.03519	1	10964	10964		24.519	0	1	24112			65031	1397	45816	45881	70240	70240					0.010999052924944408
QVVRAKIVK	9	Unmodified	_QVVRAKIVK_					0	0	0			REV__nc|ENSG00000010932|Q01740-2|FMO1	REV__nc|ENSG00000010932|Q01740-2|FMO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7737426757812	2	520.850576	1039.6866	-0.58005	-0.00030212	-0.53704	-0.00027972	-1.1171	-0.00058184	520.850362879557	61.503	0.3333	61.325	61.162	61.495	-0.17781					12	7	2	0	0	0	0.024523	1	6902	6902		29.15	7.1897	1	72753	+		65032	19913	45817	45882	70241	70241					0.16834294256204885
QVVRSALAN	9	Unmodified	_QVVRSALAN_					0	0	0		nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;NEMF|p.S468Cfs*8|1|0.06|ENSG00000165525|chr14:49828630-49828637|ATATGCTG/-|frameshift_variant;NEMF|p.P587Hfs*4|1|0.23|ENSG00000165525|chr14:49806118-49806118|G/-|frameshift_variant;nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF	nc|ENSG00000165525|O60524-3|NEMF	nc|ENSG00000165525|O60524-3|NEMF	MSMS	OPSCC_40_ClassI_Rep-3	6	479.2772216796875	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.854	1	85.717	85.217	86.217	-0.13753								0	0	0	0.6138	1	10402	10402		37.812	4.9991	1				65033	7426	45818	45883	70242	70242					0.06031992020314192
QVVRVTRKAPS	11	Unmodified	_QVVRVTRKAPS_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.24267578125	3	414.254328	1239.74115	0.040564	1.6804E-05	-2.867	-0.0011877	-2.8264	-0.0011709	414.5873757349115	35.441	0.4874	35.441	35.2	35.687	0					39	12	4	0	0	0	0.024723	1	2697	2697		31.068	5.9422	1	200140			65034	362	45819	45884	70243	70243					0.13087261336977463
QVVRVTRKAPS	11	Unmodified	_QVVRVTRKAPS_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	414.254328	1239.74115	-0.35304	-0.00014625	-2.2292	-0.00092345	-2.5822	-0.0010697	414.58753452278864	35.28	0.7844	35.324	34.832	35.616	0.04406	-0.012418	0.00010294	NaN	31.068	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127080			65035	362	45819	45884							0.13087261336977463
QVVSASYNSP	10	Unmodified	_QVVSASYNSP_					0	0	0		ENST00000514142.5_1_4:186435855-186436095:-|nuORF;ENST00000512380.1_1_4:186435855-186446271:-|nuORF;nc|ENSG00000154553|Q53GG5-3|PDLIM3;ENST00000504011.5_1_4:186435442-186456588:-|nuORF;nc|ENSG00000154553|Q53GG5-2|PDLIM3	ENST00000514142.5_1_4:186435855-186436095:-|nuORF	ENST00000514142.5_1_4:186435855-186436095:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3043823242188	2	526.256371	1050.49819	0.072033	3.7908E-05	3.8114	0.0020058	3.8834	0.0020437	526.2582460990353	69.828	0.7808	69.606	69.307	70.087	-0.22245					38	18	3	0	0	0	0.03519	1	8099	8099		33.922	5.6674	1	534930			65036	15705	45820	45885	70244	70244					-0.025040281787369167
QVVVDGTGPP	10	Unmodified	_QVVVDGTGPP_					0	0	0			REV__nc|ENSG00000073008|P15151-3|PVR	REV__nc|ENSG00000073008|P15151-3|PVR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7569274902344	2	484.756007	967.497461	4.9567	0.0024028	-0.0039644	-1.9218E-06	4.9528	0.0024009	484.75587473030123	17.18	0.32546	17.24	17.104	17.429	0.06036					15	10	2	0	0	0	1.1197	1	105	105		20.947	3.582	1	47413	+		65037	20490	45821	45886	70245	70245					0.012411771722327103
QVVVYAHL	8	Unmodified	_QVVVYAHL_					0	0	0			REV__ENSG00000076864|ENST00000374765|RAP1GAP	REV__ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2716979980469	2	464.766178	927.517802	-1.0587	-0.00049205	-2.6482	-0.0012308	-3.707	-0.0017229	464.7647761780735	20.352	1.1177	20.352	19.831	20.949	0					46	22	3	0	0	0	0.027866	1	541	541		44.531	12.576	1	192200	+		65038	20574	45822	45887	70246	70246					0.05114392622692776
QVVYDKPIK	9	Unmodified	_QVVYDKPIK_					0	0	0			REV__ENSG00000168246|ENST00000393792|UBTD2	REV__ENSG00000168246|ENST00000393792|UBTD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3170776367188	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.89441	1	11112	11112		32.812	2.3088	1	11705000	+		65039	26241	45823	45888	70247	70247					0.08222889028456848
QVVYLHSNN	9	Unmodified	_QVVYLHSNN_					0	0	0		ENSG00000182492|ENST00000331595|BGN;BGN|p.L302F|1|0.6|ENSG00000182492|chrX:153507180-153507180|C/T|missense_variant	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3297729492188	2	537.272355	1072.53016	-1.3782	-0.00074048	3.8475	0.0020671	2.4692	0.0013267	537.7759243978049	43.767	0.21497	43.767	43.585	43.8	0					8	5	2	0	0	0	0.024292	1	4115	4115		40.778	0	1	54933			65040	9140	45824	45889	70248	70248					-0.003206157049135072
QVVYNRVGK	9	Unmodified	_QVVYNRVGK_					0	0	0		ENSG00000111962|ENST00000367463|UST	ENSG00000111962|ENST00000367463|UST	ENSG00000111962|ENST00000367463|UST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.80712890625	2	531.806365	1061.59818	0.77708	0.00041325	-1.1167	-0.00059388	-0.33965	-0.00018063	531.8056769437933	20.485	1.8067	20.554	20.021	21.827	0.068901					52	17	4	0	0	0	0.78069	1	528	528		40.573	3.4135	1	763580			65041	3161	45825	45890	70249	70249					0.06984253945756791
QVVYVPVKTG	10	Unmodified	_QVVYVPVKTG_					0	0	0		ENSG00000197183|ENST00000621426|NOL4L;ENST00000485364.1_1_20:31136574-31172692:-|nuORF	ENSG00000197183|ENST00000621426|NOL4L	ENSG00000197183|ENST00000621426|NOL4L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3165893554688	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0344	1	11217	11217		41.427	1.3684	1	11601000			65042	9971	45826	45891	70250	70250					0.08222889028479585
QVVYVPVKTG	10	Unmodified	_QVVYVPVKTG_					0	0	0		ENSG00000197183|ENST00000621426|NOL4L;ENST00000485364.1_1_20:31136574-31172692:-|nuORF	ENSG00000197183|ENST00000621426|NOL4L	ENSG00000197183|ENST00000621426|NOL4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.318774	1088.623	0.29621	0.00016153	-4.2299	-0.0023066	-3.9337	-0.0021451	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.1228	1	10463	10463		22.58	1.6327	1	4888900			65043	9971	45826	45891	70251	70251					0.08222889028479585
QVWPFLGQY	9	Unmodified	_QVWPFLGQY_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7975463867188	2	569.290017	1136.56548	-0.247	-0.00014062	-2.0092	-0.0011438	-2.2562	-0.0012844	569.28915869451	45.141	0.34945	44.888	44.67	45.019	-0.25252					11	8	2	0	0	0	0.024381	1	4221	4221		37.159	8.9048	1	2839100			65044	5353	45827	45892	70252	70252					0.0026604682288962067
QVWPFLGQY	9	Unmodified	_QVWPFLGQY_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.797607421875	2	569.290017	1136.56548	-0.42087	-0.0002396	-1.8662	-0.0010624	-2.287	-0.001302	569.2892110362064	45.141	0.34575	44.93	44.677	45.022	-0.21109					11	8	2	0	0	0	0.024323	1	4227	4227		53.351	2.016	1	2881100			65045	5353	45827	45892	70253	70253					0.0026604682288962067
QVWPGMPW	8	Unmodified	_QVWPGMPW_					0	0	0		ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.9708557128906	2	500.739105	999.463658	1.4261	0.00071409	-2.0776	-0.0010403	-0.65154	-0.00032625	500.7381384693765	17.237	0.25274	17.083	16.957	17.209	-0.15403					7	4	2	0	0	0	0.027866	1	169	169		23.037	1.3344	1	45337			65046	11744	45828	45893	70254	70254					-0.03609522800502418
QVWSQLEPD	9	Unmodified	_QVWSQLEPD_					0	0	0			REV__ENSG00000179477|ENST00000647874|ALOX12B	REV__ENSG00000179477|ENST00000647874|ALOX12B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2820434570312	2	551.264196	1100.51384	-0.32617	-0.00017981	3.752	0.0020684	3.4259	0.0018886	551.2663249814518	57.466	0.37976	57.466	57.187	57.567	0					15	9	2	0	0	0	0.024539	1	6430	6430		14.865	0	1	343250	+		65047	27272	45829	45894	70255	70255					-0.032397416616504415
QVWTLLLRA	9	Unmodified	_QVWTLLLRA_					0	0	0			REV__ENST00000429289.5_1_7:143216320-143216668:+|nuORF	REV__ENST00000429289.5_1_7:143216320-143216668:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2821044921875	2	550.334759	1098.65496	0.025899	1.4253E-05	-3.7951	-0.0020886	-3.7692	-0.0020743	550.3321216617927	57.606	0.31069	57.431	57.149	57.46	-0.1749					12	7	2	0	0	0	0.024511	1	6430	6430		40.778	5.6261	1	105400	+		65048	32332	45830	45895	70256	70256					0.10958301502273571
QVWVWEYE	8	Unmodified	_QVWVWEYE_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3109741210938	2	569.763832	1137.51311	-0.096513	-5.4989E-05	0.24471	0.00013943	0.1482	8.4439E-05	569.7635283895678	30.914	0.82867	30.762	30.257	31.085	-0.15231					46	19	3	0	0	0	0.027866	1	2034	2034		30.504	0	1	345740			65049	2198	45831	45896	70257	70257					-0.05014536310727635
QVYRRHFLKT	10	Unmodified	_QVYRRHFLKT_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7613220214844	3	449.926322	1346.75714	-0.62587	-0.00028159	1.6066	0.00072286	0.98074	0.00044126	449.92660724807416	38.212	0.8686	38.033	37.809	38.678	-0.17929					44	24	2	0	0	0	0.03519	1	3228	3228		14.086	0	1	191300			65050	10219	45832	45897	70258	70258					0.09762967573874448
QVYSYEKSCTS	11	Unmodified	_QVYSYEKSCTS_					0	0	0		ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	647.78564453125	2	647.784635	1293.55472	1.3319	0.00086279	0.3124	0.00020237	1.6443	0.0010652	647.7847304525877	49.49	0.70181	49.49	49.176	49.878	0					58	18	4	0	0	0	1.0075	1	5120	5120		35.152	3.6222	1	3147700			65051	16022	45833	45898	70259	70259					-0.08031768404339346
QWDSMEEY	8	Unmodified	_QWDSMEEY_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2692260742188	2	544.205489	1086.39643	-0.48874	-0.00026598	1.1906	0.00064793	0.70185	0.00038195	544.2061003567358	70.328	0.24692	70.056	69.869	70.116	-0.27185					8	5	2	0	0	0	0.027866	1	8182	8182		40.573	3.4135	1	68663			65052	10202	45834	45899	70260	70260					-0.14331642592765093
QWGRKAKRPLN	11	Unmodified	_QWGRKAKRPLN_					0	0	0		ENST00000360472.8_1_1:160183673-160183802:+|nuORF	ENST00000360472.8_1_1:160183673-160183802:+|nuORF	ENST00000360472.8_1_1:160183673-160183802:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9328918457031	3	451.933588	1352.77894	0.96807	0.00043751	-2.8849	-0.0013038	-1.9169	-0.00086629	451.9321669232396	97.087	2.2013	96.951	95.725	97.926	-0.1367					165	50	4	0	0	0	1.0764	1	11999	11999		17.833	0	1	596220			65053	12769	45835	45900	70261	70261					0.11665772322453449
QWLNARQV	8	Unmodified	_QWLNARQV_					0	0	0		ENSG00000198354|ENST00000360028|DCAF12L2	ENSG00000198354|ENST00000360028|DCAF12L2	ENSG00000198354|ENST00000360028|DCAF12L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8184509277344	2	507.777608	1013.54066	0.22944	0.0001165	-1.6228	-0.00082402	-1.3934	-0.00070751	507.7766508608072	68.584	1.0067	68.341	67.951	68.958	-0.24277					34	24	2	0	0	0	0.027866	1	7937	7937		71.378	5.4805	1	862050			65054	10125	45836	45901	70262	70262					0.034434117401815456
QWPLLIDPHR	10	Unmodified	_QWPLLIDPHR_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.910400390625	3	425.571657	1273.69314	-0.60248	-0.0002564	-1.8269	-0.00077748	-2.4294	-0.0010339	425.5708503572191	39.146	0.32082	39.17	39.028	39.349	0.023727					17	8	3	0	0	0	0.03519	1	3275	3275		36.318	14.537	1	123810			65055	9482;18594	45837	45902	70263	70263					0.06724187416921268
QWQGDWGHR	9	Unmodified	_QWQGDWGHR_					0	0	0			REV__ENST00000276282.6_1_8:8750374-8750710:-|nuORF	REV__ENST00000276282.6_1_8:8750374-8750710:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.2412719726562	2	585.265396	1168.51624	-1.6717	-0.00097839	4.3978	0.0025739	2.7261	0.0015955	585.267822785059	60.993	1.3382	60.817	60.239	61.577	-0.1761					54	32	2	0	0	0	0.024263	1	6912	6912		60.972	16.855	1	121500	+		65056	29850	45838	45903	70264	70264					-0.061278484133254096
QWQKILISV	9	Unmodified	_QWQKILISV_					0	0	0		chr12:54284317-54284937|521|12.06|0.0|20.2|+|1|HNRNPA1,HNRNPA1|2	chr12:54284317-54284937|521|12.06|0.0|20.2|+|1|HNRNPA1,HNRNPA1|2	chr12:54284317-54284937|521|12.06|0.0|20.2|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.8338623046875	2	557.834591	1113.65463	-0.32652	-0.00018215	-0.069353	-3.8687E-05	-0.39588	-0.00022083	557.834420928768	64.229	0.67978	64.002	63.7	64.38	-0.22773					47	16	4	0	0	0	0.20967	1	7282	7282		87.754	2.8388	1	1417500			65057	323	45839	45904	70265	70265					0.10234881782434968
QWQKILISV	9	Unmodified	_QWQKILISV_					0	0	0		chr12:54284317-54284937|521|12.06|0.0|20.2|+|1|HNRNPA1,HNRNPA1|2	chr12:54284317-54284937|521|12.06|0.0|20.2|+|1|HNRNPA1,HNRNPA1|2	chr12:54284317-54284937|521|12.06|0.0|20.2|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.8341674804688	2	557.834591	1113.65463	-0.012522	-6.9851E-06	-0.32958	-0.00018385	-0.3421	-0.00019084	557.8342650486061	64.178	0.794	63.985	63.677	64.471	-0.19244					48	19	4	0	0	0	0.29158	1	7284	7284		76.774	12.567	1	1387200			65058	323	45839	45904	70266	70266					0.10234881782434968
QWRPLLKA	8	Unmodified	_QWRPLLKA_					0	0	0		ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.78863525390625	2	506.308544	1010.60253	-0.59962	-0.00030359	3.1937	0.001617	2.5941	0.0013134	506.31001184718866	48.716	0.71066	48.783	48.378	49.089	0.066795					53	19	3	0	0	0	0.027866	1	4958	4958		33.516	6.8227	1	2420300			65059	1959	45840	45905	70267	70267					0.09765763159327889
QWSGHHQR	8	Unmodified	_QWSGHHQR_					0	0	0			REV__ENST00000415861.2_1_6:109689610-109689763:-|nuORF	REV__ENST00000415861.2_1_6:109689610-109689763:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2984008789062	2	518.247006	1034.47946	-0.72522	-0.00037584	3.407	0.0017657	2.6818	0.0013898	518.2478167940096	38.477	0.45815	38.394	38.149	38.607	-0.082516					17	11	2	0	0	0	0.027866	1	3243	3243		33.516	16.151	1	74345	+		65060	32063	45841	45906	70268	70268					-0.036401002392494775
QYAHYSLVF	9	Unmodified	_QYAHYSLVF_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2850952148438	2	564.279649	1126.54475	5.2679	0.0029726	4.4039	0.002485	9.6717	0.0054576	564.7839162386942	16.984	0.46762	16.733	16.557	17.025	-0.25118					18	11	2	0	0	0	1.0148	1	115	115		17.365	0.89182	1	26703	+		65061	25803	45842	45907	70269	70269					-0.01346543556769575
QYDMWWEPR	9	Unmodified	_QYDMWWEPR_					0	0	0			REV__ENSG00000181195|ENST00000451791|PENK	REV__ENSG00000181195|ENST00000451791|PENK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.5266418457031	3	437.525607	1309.55499	0.42683	0.00018675	1.8997	0.00083119	2.3266	0.0010179	437.5264634399943	52.874	0.78812	52.684	52.308	53.096	-0.18982					61	19	6	0	0	0	0.91168	1	5515	5515		31.634	0.56612	1	1782200	+		65062	27390	45843	45908	70270	70270					-0.0874030389386462
QYFSLSTK	8	Unmodified	_QYFSLSTK_					0	0	0		ENSG00000254221|ENST00000523390|PCDHGB1;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	ENSG00000254221|ENST00000523390|PCDHGB1	ENSG00000254221|ENST00000523390|PCDHGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25	2	487.2531	972.491647	-0.30299	-0.00014763	-1.2825	-0.00062492	-1.5855	-0.00077255	487.2524386615411	26.437	1.1257	26.437	25.867	26.993	0					41	26	2	0	0	0	0.027866	1	1302	1302		53.351	0	1	636030			65063	10876	45844	45909	70271	70271					0.004300786605654139
QYHRALVAVLL	11	Unmodified	_QYHRALVAVLL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.88232421875	2	641.885147	1281.75574	-0.57436	-0.00036868	-3.7858	-0.00243	-4.3602	-0.0027987	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0054	1	11582	11582		35.618	0.46626	1	1351900			65064	1896	45845	45910	70272	70272					0.12613333485114708
QYKSRTVT	8	Unmodified	_QYKSRTVT_					0	0	0			REV__ENSG00000197183|ENST00000621426|NOL4L	REV__ENSG00000197183|ENST00000621426|NOL4L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7694396972656	2	491.769448	981.524344	-0.56742	-0.00027904	0.49222	0.00024206	-0.075202	-3.6982E-05	491.7695137494705	27.983	0.80066	27.983	27.689	28.49	0					50	19	4	0	0	0	0.53523	1	1587	1587		82.305	2.5924	1	2056700	+		65065	28276	45846	45911	70273	70273					0.03284285783422547
QYKVRAYIQ	9	Unmodified	_QYKVRAYIQ_					0	0	0		nc|ENSG00000182973|Q9H9A5-4|CNOT10;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.8029174804688	2	584.827298	1167.64004	-0.91817	-0.00053697	-0.13357	-7.8115E-05	-1.0517	-0.00061509	584.8274236365327	53.583	0.54213	53.446	53.208	53.75	-0.13617					31	15	3	0	0	0	0.024506	1	5675	5675		38.806	17.859	1	1130200			65066	9182	45847	45912	70274	70274					0.06292809634260266
QYLLLQVVTT	10	Unmodified	_QYLLLQVVTT_					0	0	0		ENST00000473653.1_1_1:7846839-7848157:+|nuORF	ENST00000473653.1_1_1:7846839-7848157:+|nuORF	ENST00000473653.1_1_1:7846839-7848157:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.34326171875	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.1286	1	12023	12023		25.574	1.0549	1	12648000			65067	15012	45848	45913	70275	70275					0.09415427371413898
QYTSKKPLT	9	Unmodified	_QYTSKKPLT_					0	0	0		ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.3004150390625	2	533.300581	1064.58661	-0.60186	-0.00032097	-2.7549	-0.0014692	-3.3567	-0.0017901	533.2983906544431	36.688	0.87339	36.471	36.205	37.078	-0.21661					42	21	3	0	0	0	0.29158	1	2892	2892		76.774	2.5191	1	819870			65068	12122	45849	45914	70276	70276					0.05690012131753974
QYTSKKPLT	9	Unmodified	_QYTSKKPLT_					0	0	0		ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.300581	1064.58661	-0.18563	-9.8997E-05	-2.8814	-0.0015366	-3.067	-0.0016356	533.2984219582883	36.718	0.67368	36.516	36.206	36.879	-0.20254	0.049847	0.00058814	NaN	76.774	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	936100			65069	12122	45849	45914							0.05690012131753974
QYTSKKPLT	9	Unmodified	_QYTSKKPLT_					0	0	0		ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.300581	1064.58661	1.2815	0.00068344	-4.8313	-0.0025765	-3.5498	-0.0018931	533.2973006541107	36.609	0.91696	36.411	36.093	37.01	-0.19829	-0.055357	-0.0014916	NaN	76.774	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595070			65070	12122	45849	45914							0.05690012131753974
RAAAAGGQPG	10	Unmodified	_RAAAAGGQPG_					0	0	0		ENST00000389698.7_1_14:36278151-36278391:-|nuORF	ENST00000389698.7_1_14:36278151-36278391:-|nuORF	ENST00000389698.7_1_14:36278151-36278391:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7845458984375	2	428.225208	854.435863	-0.40465	-0.00017328	0.92312	0.0003953	0.51847	0.00022202	428.2255410791596	25.775	0.64805	25.603	25.324	25.972	-0.17151					32	16	3	0	0	0	0.03519	1	1281	1281		32.812	7.3622	1	382590			65071	13380	45850	45915	70277	70277					0.0028229026362396326
RAAAAVTVAAT	11	Unmodified	_RAAAAVTVAAT_					0	0	0			REV__ENST00000607016.1_1_6:34360304-34360421:-|nuORF	REV__ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.28997802734375	2	501.290548	1000.56654	1.134	0.00056849	-1.3891	-0.00069632	-0.25501	-0.00012783	501.2895170379871	98.251	1.1783	98.127	97.812	98.99	-0.12413					77	28	4	0	0	0	1.0429	1	12168	12168		27.047	4.0048	1	1580300	+		65072	35943	45851	45916	70278	70278					0.06628261191792717
RAAAAYPT	8	Unmodified	_RAAAAYPT_					0	0	0			REV__ENST00000463947.5_1_3:52558507-52559018:-|nuORF	REV__ENST00000463947.5_1_3:52558507-52559018:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.7189636230469	2	410.719227	819.423902	0.96756	0.0003974	-1.8848	-0.00077414	-0.91727	-0.00037674	410.7183696284328	96.072	1.6868	95.949	95.421	97.108	-0.12305					87	38	4	0	0	0	1.0574	1	11923	11923		26.796	1.3459	1	1564100	+		65073	32955	45852	45917	70279	70279					0.006966735204173347
RAAADPDL	8	Unmodified	_RAAADPDL_					0	0	0		ENST00000393229.3_1_9:135117391-135118432:+|nuORF	ENST00000393229.3_1_9:135117391-135118432:+|nuORF	ENST00000393229.3_1_9:135117391-135118432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.7617492675781	2	414.714142	827.413731	1.0518	0.00043621	-1.4234	-0.00059032	-0.3716	-0.00015411	414.71348876970154	87.864	0.55506	87.864	87.573	88.128	0					20	13	2	0	0	0	0.027866	1	11084	11084		37.159	0	1	101530			65074	13444	45853	45918	70280	70280					-0.006879342048137005
RAAAGRAHAR	10	Unmodified	_RAAAGRAHAR_					0	0	0		ENST00000550376.5_1_12:108154376-108155011:-|nuORF	ENST00000550376.5_1_12:108154376-108155011:-|nuORF	ENST00000550376.5_1_12:108154376-108155011:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.79833984375	2	518.797198	1035.57984	-0.52112	-0.00027035	2.6588	0.0013794	2.1376	0.001109	518.7984198170305	30.793	1.2872	30.804	30.376	31.663	0.011799					86	30	6	0	0	0	0.62431	1	1984	1984		74.255	0.28031	1	4433600			65075	16579	45854	45919	70281	70281					0.06347556814398558
RAAARAVGSSH	11	Unmodified	_RAAARAVGSSH_					0	0	0		ENST00000258080.7_1_2:74756576-74756741:+|nuORF	ENST00000258080.7_1_2:74756576-74756741:+|nuORF	ENST00000258080.7_1_2:74756576-74756741:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.2454833984375	2	541.794321	1081.57409	-1.1477	-0.00062184	-2.5721	-0.0013936	-3.7199	-0.0020154	541.7926964220218	89.982	1.1548	89.982	89.44	90.594	0					31	22	2	0	0	0	0.024723	1	11340	11340		23.523	8.8586	1	221170			65076	11412	45855	45920	70282	70282					0.036564135120897845
RAAARVPEA	9	Unmodified	_RAAARVPEA_					0	0	0		ENST00000470643.5_1_6:30709969-30710499:-|nuORF	ENST00000470643.5_1_6:30709969-30710499:-|nuORF	ENST00000470643.5_1_6:30709969-30710499:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.284912109375	2	470.769783	939.525013	0.098612	4.6424E-05	4.2818	0.0020158	4.3805	0.0020622	470.7716483226031	43.184	0.62029	43.045	42.773	43.393	-0.13929					30	16	2	0	0	0	0.024405	1	4060	4060		44.117	0	1	1421200			65077	14935	45856	45921	70283	70283					0.052831252231385406
RAAARVPEA	9	Unmodified	_RAAARVPEA_					0	0	0		ENST00000470643.5_1_6:30709969-30710499:-|nuORF	ENST00000470643.5_1_6:30709969-30710499:-|nuORF	ENST00000470643.5_1_6:30709969-30710499:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.769783	939.525013	0.084476	3.9769E-05	4.2841	0.0020168	4.3686	0.0020566	470.77162192240434	42.984	0.6529	42.984	42.679	43.332	0	-0.065299	0.00034771	NaN	27.882	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1593000			65078	14935	45856	45921							0.052831252231385406
RAAASAGRQL	10	Unmodified	_RAAASAGRQL_					0	0	0			REV__ENSG00000235098|ENST00000537107|ANKRD65	REV__ENSG00000235098|ENST00000537107|ANKRD65	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.28912353515625	2	500.785964	999.557376	-0.1541	-7.7169E-05	4.1398	0.0020731	3.9857	0.001996	500.78729431251725	87.739	1.0094	87.56	87.238	88.247	-0.17875					51	24	3	0	0	0	0.98527	1	10636	10636		47.96	2.0076	1	2531900	+		65079	28921	45857	45922	70284	70284					0.05757912626131656
RAACYLHAF	9	Unmodified	_RAACYLHAF_					0	0	0		ENST00000408953.3_1_5:159826673-159826808:-|nuORF	ENST00000408953.3_1_5:159826673-159826808:-|nuORF	ENST00000408953.3_1_5:159826673-159826808:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2833862304688	2	526.260736	1050.50692	-0.48348	-0.00025443	-0.22875	-0.00012038	-0.71222	-0.00037481	526.2605442071978	90.917	0.37311	90.904	90.702	91.075	-0.012383					13	8	2	0	0	0	0.024443	1	11491	11491		35.201	0	1	117370			65080	13759	45858	45923	70285	70285					-0.016313330232378576
RAAEERPP	8	Unmodified	_RAAEERPP_					0	0	0			REV__nc|ENSG00000108387|O43236-8|SEPTIN4	REV__nc|ENSG00000108387|O43236-8|SEPTIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7904052734375	2	463.246141	924.477728	-0.39282	-0.00018197	-2.8674	-0.0013283	-3.2602	-0.0015103	463.2447205095283	20.713	0.71863	20.608	20.227	20.946	-0.10477					29	14	3	0	0	0	0.027866	1	526	526		29.15	10.825	1	60501	+		65081	21729	45859	45924	70286	70286					0.012468459521301156
RAAEKSCK	8	Unmodified	_RAAEKSCK_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2637634277344	2	446.737094	891.459635	0.094113	4.2044E-05	-1.8527	-0.00082768	-1.7586	-0.00078563	446.7363532869979	46.211	0.4259	46.211	45.986	46.412	0					14	11	2	0	0	0	0.027866	1	4520	4520		31.955	0	1	52884			65082	10179	45860	45925	70287	70287					0.009563877057757963
RAAEQEPEGDP	11	Unmodified	_RAAEQEPEGDP_					0	0	0		ENST00000398125.5_1_4:2931220-2931337:+|nuORF	ENST00000398125.5_1_4:2931220-2931337:+|nuORF	ENST00000398125.5_1_4:2931220-2931337:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	3	400.182675	1197.52619	1.8121	0.00072517	-2.0642	-0.00082605	-0.25207	-0.00010087	400.5158957387452	21.932	0.34001	22.003	21.83	22.17	0.071487					10	6	2	0	0	0	0.024751	1	676	676		27.644	1.5805	1	14260			65083	13616	45861	45926	70288	70288					-0.0646674998929484
RAAEQGQQL	9	Unmodified	_RAAEQGQQL_					0	0	0			REV__ENSG00000187550|ENST00000413299|SBK2	REV__ENSG00000187550|ENST00000413299|SBK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7870178222656	2	500.762155	999.509757	0.27433	0.00013738	0.81644	0.00040884	1.0908	0.00054622	500.7642347271998	54.595	0.52396	54.693	54.458	54.982	0.098015					34	14	4	0	0	0	0.022482	1	5928	5928		72.879	14.097	1	427020	+		65084	27942	45862	45927	70289	70289					0.009982136352846283
RAAFLGCL	8	Unmodified	_RAAFLGCL_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;nc|ENSG00000149823|Q9UID3-2|VPS51	ENSG00000149823|ENST00000279281|VPS51	ENSG00000149823|ENST00000279281|VPS51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.2166442871094	2	425.733823	849.453093	-0.14751	-6.28E-05	1.3952	0.00059399	1.2477	0.00053119	425.73440460961507	27.022	0.3886	26.865	26.629	27.018	-0.15664					13	8	2	0	0	0	0.027866	1	1409	1409		1.4648	0	1	102460			65085	6122	45863	45928	70290	70290					0.02234494545052712
RAAFNYRA	8	Unmodified	_RAAFNYRA_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.79022216796875	2	484.756675	967.498798	-0.28426	-0.0001378	-0.82249	-0.00039871	-1.1067	-0.0005365	484.75600023626123	45.633	0.57756	45.633	45.375	45.953	0					36	16	3	0	0	0	0.027866	1	4496	4496		18.324	0	1	2154000	+		65086	25306	45864	45929	70291	70291					0.013748560516432917
RAAGKPPKPK	10	Unmodified	_RAAGKPPKPK_					0	0	0		ENSG00000151789|ENST00000281523|ZNF385D	ENSG00000151789|ENST00000281523|ZNF385D	ENSG00000151789|ENST00000281523|ZNF385D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.797607421875	2	525.33255	1048.65055	-0.43786	-0.00023002	-2.473	-0.0012992	-2.9109	-0.0015292	525.3322339548052	39.843	0.29102	39.843	39.696	39.988	0					11	7	2	0	0	0	0.03519	1	3448	3448		34.173	15.848	1	107010			65087	6230	45865	45930	70292	70292					0.1281683707936736
RAAGRAPK	8	Unmodified	_RAAGRAPK_					0	0	0		ENST00000599194.5_1_19:58962997-58965066:+|nuORF	ENST00000599194.5_1_19:58962997-58965066:+|nuORF	ENST00000599194.5_1_19:58962997-58965066:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.8910217285156	2	413.753936	825.493319	0.0039799	1.6467E-06	-4.2796	-0.0017707	-4.2756	-0.001769	413.7519395210949	21.442	0.4386	21.251	21.029	21.468	-0.19072					14	8	3	0	0	0	0.027866	1	636	636		1.0954	0	1	18132			65088	17489	45866	45931	70293	70293					0.07359177259843364
RAAGRAPK	8	Unmodified	_RAAGRAPK_					0	0	0		ENST00000599194.5_1_19:58962997-58965066:+|nuORF	ENST00000599194.5_1_19:58962997-58965066:+|nuORF	ENST00000599194.5_1_19:58962997-58965066:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.753936	825.493319	0.2754	0.00011395	-4.8845	-0.002021	-4.6091	-0.001907	413.7520608857473	21.384	0.33427	21.207	21.016	21.35	-0.17721	-0.034697	-0.00096422	NaN	1.0954	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14135			65089	17489	45866	45931							0.07359177259843364
RAAGRAPK	8	Unmodified	_RAAGRAPK_					0	0	0		ENST00000599194.5_1_19:58962997-58965066:+|nuORF	ENST00000599194.5_1_19:58962997-58965066:+|nuORF	ENST00000599194.5_1_19:58962997-58965066:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	413.753936	825.493319	-1.1725	-0.00048511	-2.2493	-0.00093066	-3.4218	-0.0014158	413.7527066391978	21.48	0.29186	21.267	21.118	21.41	-0.2128	0.025399	0.0012165	NaN	1.0954	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16322			65090	17489	45866	45931							0.07359177259843364
RAAGRKAGGL	10	Unmodified	_RAAGRKAGGL_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.79278564453125	2	478.79105	955.567546	0.43669	0.00020908	2.1674	0.0010377	2.6041	0.0012468	478.79185332165343	50.757	0.52334	50.757	50.544	51.067	0					43	14	4	0	0	0	0.96965	1	5332	5332		49.442	5.3247	1	6748400	+		65091	37259	45867	45932	70294	70294					0.08798520351376737
RAAGSRVEP	9	Unmodified	_RAAGSRVEP_					0	0	0		ENST00000406213.1_1_22:24237237-24238205:-|nuORF	ENST00000406213.1_1_22:24237237-24238205:-|nuORF	ENST00000406213.1_1_22:24237237-24238205:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.760009765625	2	471.759415	941.504277	-0.049463	-2.3335E-05	2.1909	0.0010336	2.1414	0.0010102	471.7603045510955	75.543	0.66724	75.368	75.029	75.696	-0.17548					41	16	3	0	0	0	0.72875	1	8915	8915		44.117	4.864	1	1591400			65092	13728	45868	45933	70295	70295					0.03118534843474663
RAAGTSKLKI	10	Unmodified	_RAAGTSKLKI_					0	0	0		ENST00000532278.1_1_11:57194174-57194387:-|nuORF	ENST00000532278.1_1_11:57194174-57194387:-|nuORF	ENST00000532278.1_1_11:57194174-57194387:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.830078125	2	522.82984	1043.64513	0.27765	0.00014516	-0.69802	-0.00036494	-0.42037	-0.00021978	522.8293892577153	21.393	0.5364	21.202	20.931	21.468	-0.19072					27	10	3	0	0	0	1.1088	1	673	673		31.53	0	1	456890			65093	16286	45869	45934	70296	70296					0.1250511349687713
RAAHHMLDI	9	Unmodified	_RAAHHMLDI_					0	0	0			REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.2941284179688	2	532.276918	1062.53928	-0.4689	-0.00024958	-3.412	-0.0018161	-3.8809	-0.0020657	532.2750668963837	77.597	1.1531	77.597	77.252	78.405	0					39	27	2	0	0	0	0.024263	1	9610	9610		51.335	0	1	1108400	+		65094	27931	45870	45935	70297	70297					0.010514543797626175
RAAHLPLLT	9	Unmodified	_RAAHLPLLT_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.3041076660156	2	496.306001	990.597449	0.38288	0.00019003	-4.1796	-0.0020743	-3.7967	-0.0018843	496.30370454264414	83.121	2.9298	82.903	82.219	85.149	-0.21785					146	68	3	0	0	0	0.98697	1	10005	10005		23.042	2.0956	1	269610			65095	4041;18240	45871	45936	70298	70298					0.10177459296698999
RAAILCVSCTT	11	Unmodified	_RAAILCVSCTT_					0	0	0		ENST00000263856.8_1_2:86732845-86732923:-|nuORF	ENST00000263856.8_1_2:86732845-86732923:-|nuORF	ENST00000263856.8_1_2:86732845-86732923:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2659301757812	2	569.291376	1136.5682	0.18136	0.00010325	-0.55398	-0.00031537	-0.37261	-0.00021213	569.2907797951549	22.413	0.5175	22.211	21.951	22.468	-0.20199					26	10	4	0	0	0	0.024756	1	769	769		36.447	0	1	138270			65096	11544	45872	45937	70299	70299					0.005378108938884907
RAAITHIGG	9	Unmodified	_RAAITHIGG_					0	0	0			REV__ENSG00000183559|ENST00000329446|C10orf120	REV__ENSG00000183559|ENST00000329446|C10orf120	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2582092285156	2	448.259051	894.503549	0.20344	9.1196E-05	-0.26622	-0.00011933	-0.062773	-2.8139E-05	448.25894092668227	86.515	1.293	86.378	85.702	86.995	-0.13734					53	29	3	0	0	0	0.98697	1	10510	10510		23.042	1.0826	1	560680	+		65097	27582	45873	45938	70300	70300					0.05207740194430244
RAAKAKKK	8	Unmodified	_RAAKAKKK_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7847900390625	2	450.808711	899.602869	0.021421	9.6569E-06	-2.8726	-0.001295	-2.8512	-0.0012853	450.80694085122286	28.474	0.41288	28.555	28.329	28.742	0.080811					14	9	2	0	0	0	0.027866	1	1589	1589		26.796	13.021	1	117450	+		65098	23777	45874	45939	70301	70301					0.14905182879169843
RAAKAPGLAPE	11	Unmodified	_RAAKAPGLAPE_					0	0	0			REV__ENSG00000159263|ENST00000290399|SIM2	REV__ENSG00000159263|ENST00000290399|SIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2901000976562	2	540.811648	1079.60874	0.012726	6.8825E-06	2.9122	0.0015749	2.9249	0.0015818	540.8129970946484	53.252	0.61227	52.993	52.723	53.335	-0.25839					25	15	3	0	0	0	0.024723	1	5596	5596		23.523	1.8204	1	291780	+		65099	25245	45875	45940	70302	70302					0.07212236600162214
RAAKGPQEV	9	Unmodified	_RAAKGPQEV_					0	0	0			REV__ENST00000360982.2_1_2:183902874-183903513:-|nuORF	REV__ENST00000360982.2_1_2:183902874-183903513:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7436218261719	2	478.269616	954.524678	-0.69298	-0.00033143	0.21376	0.00010224	-0.47922	-0.0002292	478.2699796292002	29.578	0.39255	29.656	29.41	29.802	0.078344					21	9	3	0	0	0	0.024263	1	1800	1800		26.693	1.1189	1	52240	+		65100	30927	45876	45941	70303	70303					0.045597055032772005
RAALAAEIAK	10	Unmodified	_RAALAAEIAK_					0	0	0			REV__ENST00000494072.3_3_1:19209920-19216616:-|nuORF	REV__ENST00000494072.3_3_1:19209920-19216616:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.3082580566406	2	507.308741	1012.60293	-0.21489	-0.00010901	0.73295	0.00037183	0.51807	0.00026282	507.30846402884237	41.374	0.8393	41.238	40.752	41.591	-0.13553					52	21	3	0	0	0	0.96822	1	3668	3668		49.536	3.5638	1	1347200	+		65101	25255	45877	45942	70304	70304					0.09713138088500273
RAALHTALVL	10	Unmodified	_RAALHTALVL_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2754516601562	2	532.832383	1063.65021	-0.5675	-0.00030238	0.16309	8.69E-05	-0.40441	-0.00021548	532.832356867377	49.753	0.29606	49.753	49.582	49.878	0					10	7	2	0	0	0	0.03519	1	5141	5141		39.253	14.749	1	51466	+		65102	27672	45878	45943	70305	70305					0.12093417359483283
RAALLGLAR	9	Unmodified	_RAALLGLAR_					0	0	0		ENSG00000002745|ENST00000222462|WNT16	ENSG00000002745|ENST00000222462|WNT16	ENSG00000002745|ENST00000222462|WNT16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2615661621094	2	470.806168	939.597784	0.72245	0.00034014	-1.0542	-0.00049632	-0.33174	-0.00015618	470.80555302646894	25.836	0.30239	25.916	25.706	26.008	0.08009					10	6	2	0	0	0	0.024523	1	1208	1208		37.159	14.122	1	45644			65103	727	45879	45944	70306	70306					0.12556879016551648
RAALLPLLL	9	Unmodified	_RAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.3368835449219	2	490.33677	978.658987	-0.23798	-0.00011669	0.20669	0.00010135	-0.031288	-1.5341E-05	490.3366994535845	82.387	2.6741	82.387	81.83	84.504	0					133	62	4	0	0	0	0.80658	1	10266	10266		38.806	0	1	869100			65104	7497	45880	45945	70307	70307					0.16880390996004735
RAALTLAANI	10	Unmodified	_RAALTLAANI_					0	0	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.305419921875	2	507.308741	1012.60293	0.0052672	2.6721E-06	-0.23408	-0.00011875	-0.22881	-0.00011608	507.30861996174235	41.458	0.9344	41.481	41.182	42.117	0.023006					62	26	4	0	0	0	0.91448	1	3678	3678		53.089	0.15226	1	6643100	+		65105	20327	45881	45946	70308	70308					0.09713138088500273
RAALTLAANI	10	Unmodified	_RAALTLAANI_					0	0	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3080139160156	2	507.308741	1012.60293	-0.43778	-0.00022209	0.5577	0.00028293	0.11992	6.0838E-05	507.30861459535066	41.586	0.92576	41.359	40.847	41.773	-0.2278					48	23	3	0	0	0	0.86389	1	3673	3673		56.434	0.92959	1	1277800	+		65106	20327	45881	45946	70309	70309					0.09713138088500273
RAAMPYTD	8	Unmodified	_RAAMPYTD_					0	0	0		ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.2508239746094	2	462.715827	923.417102	-0.38321	-0.00017732	-3.4275	-0.0015859	-3.8107	-0.0017633	462.71416044602415	30.003	0.42255	29.759	29.612	30.035	-0.24415					13	9	2	0	0	0	0.027866	1	1918	1918		31.955	0	1	75842			65107	9999	45882	45947	70310	70310					-0.0476700742246976
RAAMPYTD	8	Unmodified	_RAAMPYTD_					0	0	0		ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.715827	923.417102	-0.80176	-0.00037099	-2.6514	-0.0012269	-3.4532	-0.0015979	462.7143588562902	29.865	0.33963	29.693	29.49	29.829	-0.17258	-0.033946	0.00066668	NaN	31.955	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74796			65108	9999	45882	45947							-0.0476700742246976
RAAMPYTD	8	Unmodified	_RAAMPYTD_					0	0	0		ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.715827	923.417102	-0.13464	-6.2298E-05	-3.7619	-0.0017407	-3.8965	-0.001803	462.71395706339234	29.878	0.46378	29.728	29.459	29.923	-0.14952	0.0017587	-0.00036098	NaN	31.955	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102190			65109	9999	45882	45947							-0.0476700742246976
RAAPLAKV	8	Unmodified	_RAAPLAKV_					0	0	0			REV__ENST00000526177.5_1_11:75161715-75162177:-|nuORF	REV__ENST00000526177.5_1_11:75161715-75162177:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.8838195800781	2	413.268887	824.523222	-0.83757	-0.00034614	1.3737	0.0005677	0.53612	0.00022156	413.2693949325051	27.852	0.36022	27.684	27.487	27.847	-0.16816					17	8	3	0	0	0	0.027866	1	1575	1575		7.6903	3.705	1	104510	+		65110	34436	45883	45948	70311	70311					0.10394116205179671
RAAPLLRET	9	Unmodified	_RAAPLLRET_					0	0	0		ENST00000586078.5_1_19:10736293-10736947:+|nuORF	ENST00000586078.5_1_19:10736293-10736947:+|nuORF	ENST00000586078.5_1_19:10736293-10736947:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.287353515625	2	513.806365	1025.59818	0.52085	0.00026762	-3.6757	-0.0018886	-3.1549	-0.001621	513.804412389649	96.106	0.53088	96.108	95.868	96.399	0.0020752					18	12	2	0	0	0	0.024541	1	12139	12139		10.265	0	1	186020			65111	17237	45884	45949	70312	70312					0.08640253945759468
RAAPPAEQSH	10	Unmodified	_RAAPPAEQSH_					0	0	0		ENST00000588764.5_2_19:14044750-14046811:-|nuORF;ENST00000254320.7_1_19:14044750-14048840:-|nuORF	ENST00000588764.5_2_19:14044750-14046811:-|nuORF	ENST00000588764.5_2_19:14044750-14046811:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2671508789062	2	532.267604	1062.52066	0.080225	4.2701E-05	-0.82632	-0.00043982	-0.74609	-0.00039712	532.2672523365244	23.208	1.1045	23.006	22.687	23.792	-0.20193					67	24	4	0	0	0	0.72729	1	904	904		65.465	0	1	2382500			65112	11375	45885	45950	70313	70313					-0.008103839904379129
RAAPPAEQSH	10	Unmodified	_RAAPPAEQSH_					0	0	0		ENST00000588764.5_2_19:14044750-14046811:-|nuORF;ENST00000254320.7_1_19:14044750-14048840:-|nuORF	ENST00000588764.5_2_19:14044750-14046811:-|nuORF	ENST00000588764.5_2_19:14044750-14046811:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2677001953125	2	532.267604	1062.52066	-0.81119	-0.00043177	0.16149	8.5956E-05	-0.6497	-0.00034582	532.2677992848207	23.314	1.0763	23.134	22.836	23.913	-0.17989					62	24	4	0	0	0	0.69662	1	910	910		67.494	7.3754	1	3207700			65113	11375	45885	45950	70314	70314					-0.008103839904379129
RAAPPAEQSH	10	Unmodified	_RAAPPAEQSH_					0	0	0		ENST00000588764.5_2_19:14044750-14046811:-|nuORF;ENST00000254320.7_1_19:14044750-14048840:-|nuORF	ENST00000588764.5_2_19:14044750-14046811:-|nuORF	ENST00000588764.5_2_19:14044750-14046811:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2669677734375	2	532.267604	1062.52066	1.386	0.00073772	-2.1461	-0.0011423	-0.76015	-0.00040461	532.2665208031348	23.248	1.125	23.057	22.758	23.883	-0.19117					64	25	4	0	0	0	0.66532	1	888	888		69.628	0	1	2914900			65114	11375	45885	45950	70315	70315					-0.008103839904379129
RAAPQPEKLQK	11	Unmodified	_RAAPQPEKLQK_					0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.5817565917969	3	422.582333	1264.72517	0.49638	0.00020976	-1.3479	-0.0005696	-0.85152	-0.00035984	422.58168788498597	95.965	2.872	95.828	94.982	97.854	-0.13689					198	65	4	0	0	0	1.0557	1	11836	11836		15.921	0	1	769050			65115	10559	45886	45951	70316	70316					0.1033955510006308
RAAPTFTLHE	10	Unmodified	_RAAPTFTLHE_					0	0	0			REV__nc|ENSG00000155066|Q8N271-2|PROM2	REV__nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.8037109375	2	571.80128	1141.58801	1.1019	0.00063005	1.43	0.00081767	2.5319	0.0014477	571.8018161509672	97.408	0.75896	97.285	96.929	97.688	-0.12368					40	16	3	0	0	0	1.0393	1	12077	12077		40.778	0	1	223040	+		65116	24989	45887	45952	70317	70317					0.022876462205204007
RAAPVNRQ	8	Unmodified	_RAAPVNRQ_					0	0	0			REV__ENSG00000082898|ENST00000401558|XPO1	REV__ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2617492675781	2	456.262125	910.509697	0.19437	8.8684E-05	-0.10999	-5.0183E-05	0.084384	3.8501E-05	456.2619743778137	18.948	0.49133	18.829	18.61	19.101	-0.11872					21	9	3	0	0	0	1.0338	1	353	353		31.955	8.9124	1	182420	+		65117	20705	45888	45953	70318	70318					0.05086258425933465
RAARRGLLF	9	Unmodified	_RAARRGLLF_					0	0	0			REV__ENST00000262376.10_1_16:4897931-4902890:+|nuORF	REV__ENST00000262376.10_1_16:4897931-4902890:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2784423828125	2	530.330342	1058.64613	0.059258	3.1427E-05	2.0215	0.0010721	2.0808	0.0011035	530.3312852197686	69.327	0.60188	69.034	68.673	69.275	-0.29291					36	15	3	0	0	0	0.024466	1	8341	8341		18.324	0	1	491730	+		65118	29661	45889	45954	70319	70319					0.11915372656449108
RAARVCAPR	9	Unmodified	_RAARVCAPR_					0	0	0		ENST00000425773.1_1_20:57089925-57090084:-|nuORF	ENST00000425773.1_1_20:57089925-57090084:-|nuORF	ENST00000425773.1_1_20:57089925-57090084:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	500.28240966796875	2	500.285077	998.555601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.61	1	102.49	101.99	102.99	-0.12666								0	0	0	0.56622	1	12761	12761		44.117	5.3107	1				65119	14069	45890	45955	70320	70320					0.05626580336524967
RAATAPVVAL	10	Unmodified	_RAATAPVVAL_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18;GALNT18|p.I331Nfs*54|1|0.29|ENSG00000110328|chr11:11372615-11372616|-/T|frameshift_variant	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7982482910156	2	484.798009	967.581465	0.11867	5.753E-05	-1.1117	-0.00053896	-0.99305	-0.00048143	484.7976554584649	58.741	1.6893	58.833	58.297	59.986	0.091217					126	45	4	0	0	0	1.0122	1	6654	6654		44.377	0	1	93907000			65120	3035	45891	45956	70321	70321					0.09637753059791976
RAATFLRR	8	Unmodified	_RAATFLRR_					0	0	0			REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF	REV__ENST00000463323.1_1_3:119378858-119379392:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.3232727050781	2	495.801417	989.588282	1.8119	0.00089833	1.5196	0.00075341	3.3315	0.0016517	495.80212236474546	63.879	0.42879	63.924	63.688	64.117	0.045502					25	11	3	0	0	0	0.027866	1	7440	7440		23.042	0	1	469710	+		65121	32931	45892	45957	70322	70322					0.09307110731037938
RAAVHCMAN	9	Unmodified	_RAAVHCMAN_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7582702636719	2	486.728746	971.442939	0.053804	2.6188E-05	2.4224	0.001179	2.4762	0.0012052	486.73025085903873	72.081	0.32893	72.091	71.802	72.131	0.0097733					12	8	2	0	0	0	0.024457	1	8674	8674		37.159	8.0096	1	63227			65122	1376	45893	45958	70323	70323					-0.043924364518375114
RAAVLYMVIIP	11	Unmodified	_RAAVLYMVIIP_					0	0	0		ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.5339660644531	3	415.917776	1244.7315	-0.081281	-3.3806E-05	2.634	0.0010955	2.5527	0.0010617	415.9186528349161	19.966	0.24363	19.798	19.62	19.864	-0.16774					6	4	2	0	0	0	0.024828	1	474	474		9.2118	0	1	7102.9			65123	8162	45894	45959	70324	70324					0.11892357007241117
RAAVWHCAR	9	Unmodified	_RAAVWHCAR_					0	0	0			REV__ENSG00000188766|ENST00000691638|SPRED3	REV__ENSG00000188766|ENST00000691638|SPRED3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2608032226562	2	535.277252	1068.53995	-0.54355	-0.00029095	-2.2339	-0.0011957	-2.7774	-0.0014867	535.2755801366354	24.294	0.37844	24.119	23.918	24.296	-0.17484					10	8	2	0	0	0	0.024205	1	1041	1041		44.117	0	1	198540	+		65124	28061	45895	45960	70325	70325					0.008422938194598828
RACARAPLGGE	11	Unmodified	_RACARAPLGGE_					0	0	0			REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2277221679688	2	550.785107	1099.55566	-0.43082	-0.00023729	1.7131	0.00094354	1.2823	0.00070626	550.7857743191922	39.882	0.56514	39.733	39.513	40.078	-0.1497					29	14	3	0	0	0	0.024771	1	3379	3379		28.081	7.1346	1	389490	+		65125	29526	45896	45961	70326	70326					0.009865355458714475
RACARAPLGGE	11	Unmodified	_RACARAPLGGE_					0	0	0			REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	REV__ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.785107	1099.55566	-0.61371	-0.00033802	1.3421	0.00073918	0.72835	0.00040116	550.7856554592892	40.072	0.49804	39.842	39.585	40.083	-0.23021	0.039705	9.2356E-05	NaN	16.007	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427850	+		65126	29526	45896	45961							0.009865355458714475
RACMELDQV	9	Unmodified	_RACMELDQV_					0	0	0			REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7879638671875	2	532.746802	1063.47905	-1.0767	-0.0005736	1.265	0.0006739	0.18827	0.0001003	532.7458583736986	45.905	0.36462	45.703	45.528	45.892	-0.20226					11	9	2	0	0	0	0.022657	1	4359	4359		77.318	0	1	152840	+		65127	35913	45897	45962	70327	70327					-0.050150240656421374
RACNPPRKPE	10	Unmodified	_RACNPPRKPE_					0	0	0			REV__ENSG00000185105|ENST00000409745|MYADML2	REV__ENSG00000185105|ENST00000409745|MYADML2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.3301391601562	2	584.306207	1166.59786	-0.55083	-0.00032185	2.6654	0.0015574	2.1146	0.0012355	584.3077285754197	60.008	0.4736	60.008	59.745	60.219	0					22	12	2	0	0	0	0.03519	1	6857	6857		37.812	3.639	1	213680	+		65128	27736	45898	45963	70328	70328					0.021225109542456266
RACVVQRAQP	10	Unmodified	_RACVVQRAQP_					0	0	0		ENST00000409645.5_1_2:135206953-135207217:+|nuORF	ENST00000409645.5_1_2:135206953-135207217:+|nuORF	ENST00000409645.5_1_2:135206953-135207217:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.7565307617188	2	564.308749	1126.60295	-1.0365	-0.00058492	2.7692	0.0015627	1.7326	0.00097775	564.3104669570906	64.596	0.45331	64.334	64.119	64.572	-0.2626					15	11	2	0	0	0	0.03519	1	7569	7569		26.693	7.3329	1	251380			65129	13784	45899	45964	70329	70329					0.04470814816863822
RACWPWRWREW	11	Unmodified	_RACWPWRWREW_					0	0	0		ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.506591796875	4	408.700478	1630.7728	1.0299	0.00042093	-1.7173	-0.00070186	-0.68738	-0.00028093	408.6997232335314	19.173	0.64421	18.972	18.76	19.404	-0.20079					26	12	3	0	0	0	0.024873	1	433	433		9.6461	6.2374	1	41023			65130	17299	45900	45965	70330	70330					-0.01735069180767823
RACWPWRWREW	11	Unmodified	_RACWPWRWREW_					0	0	0		ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		4	408.700478	1630.7728	1.8363	0.00075048	-2.978	-0.0012171	-1.1417	-0.00046662	408.6993895174562	19.243	0.69279	19.01	18.731	19.424	-0.23345	0.018672	-0.0012201	NaN	9.6461	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28329			65131	17299	45900	45965							-0.01735069180767823
RADAQSPQV	9	Unmodified	_RADAQSPQV_					0	0	0			REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2924499511719	2	486.24888	970.483208	0.21998	0.00010697	-0.46079	-0.00022406	-0.24081	-0.00011709	486.2491361094381	82.01	0.6059	81.9	81.646	82.252	-0.11006					32	14	3	0	0	0	0.024209	1	10240	10240		66.429	4.3219	1	332230	+		65132	21482	45901	45966	70331	70331					-0.003214752560438683
RADDHADEAG	10	Unmodified	_RADDHADEAG_					0	0	0		ENST00000348624.4_1_7:4830413-4830874:+|nuORF;ENST00000490487.1_1_7:4829477-4830874:+|nuORF	ENST00000348624.4_1_7:4830413-4830874:+|nuORF	ENST00000348624.4_1_7:4830413-4830874:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7742309570312	2	528.720684	1055.42681	-0.76421	-0.00040406	1.8171	0.00096076	1.0529	0.0005567	528.7215135854734	32.462	0.81209	32.473	31.782	32.594	0.011795					25	20	2	0	0	0	0.03519	1	2181	2181		60.972	0	1	151130			65133	12583	45902	45967	70332	70332					-0.09868147883366873
RADGSLVH	8	Unmodified	_RADGSLVH_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2539367675781	2	427.727584	853.440614	-0.58937	-0.00025209	2.1872	0.00093551	1.5978	0.00068342	427.72940647409933	23.359	0.44606	23.298	23.111	23.557	-0.060862					13	10	2	0	0	0	0.027866	1	919	919		50.025	0	1	27868			65134	18070	45903	45968	70333	70333					0.008031744063828228
RADGVVRP	8	Unmodified	_RADGVVRP_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2513732910156	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0516	1	9322	9322		29.15	0	1	2257900	+		65135	23546	45904	45969	70334	70334					0.04839453677379879
RADGVVRP	8	Unmodified	_RADGVVRP_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2514953613281	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.043	1	9514	9514		30.504	1.3541	1	2292300	+		65136	23546	45904	45969	70335	70335					0.04839453677379879
RADLDGVGVK	10	Unmodified	_RADLDGVGVK_					0	0	0		nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF	nc|ENSG00000138798|P01133-2|EGF	nc|ENSG00000138798|P01133-2|EGF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2881469726562	2	515.288005	1028.56146	-0.12661	-6.5238E-05	-1.1275	-0.00058098	-1.2541	-0.00064622	515.287391484831	34.422	1.0953	34.198	33.883	34.979	-0.22412					75	27	4	0	0	0	0.42812	1	2555	2555		95.815	5.4453	1	6843700			65137	5288	45905	45970	70336	70336					0.04831957329201941
RADLFRSRL	9	Unmodified	_RADLFRSRL_					0	0	0			REV__nc|ENSG00000167081|P40426-4|PBX3	REV__nc|ENSG00000167081|P40426-4|PBX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3301391601562	2	567.330539	1132.64652	0.38005	0.00021561	-1.4224	-0.00080696	-1.0423	-0.00059135	567.3295892315691	102.64	0.75058	102.52	102.23	102.98	-0.1293					41	17	4	0	0	0	0.77768	1	12761	12761		40.778	1.5253	1	839410	+		65138	26100	45906	45971	70337	70337					0.0855074758567298
RADSPLPHNL	10	Unmodified	_RADSPLPHNL_					0	0	0		ENST00000490239.5_1_9:35616595-35617216:-|nuORF;ENST00000396757.5_1_9:35616223-35617216:-|nuORF	ENST00000490239.5_1_9:35616595-35617216:-|nuORF	ENST00000490239.5_1_9:35616595-35617216:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2988891601562	2	560.298904	1118.58326	-1.1732	-0.00065732	0.56088	0.00031426	-0.61228	-0.00034306	560.2991717218564	38.283	0.89902	38.283	38.003	38.902	0					66	24	4	0	0	0	0.69662	1	3214	3214		67.494	1.0644	1	5637100			65139	13563	45907	45972	70338	70338					0.028707620777367993
RADVKGGTLT	10	Unmodified	_RADVKGGTLT_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2923889160156	2	509.288005	1016.56146	-0.23938	-0.00012191	4.2966	0.0021882	4.0572	0.0020663	509.2901224955806	52.967	1.2145	52.82	52.095	53.31	-0.14723					57	31	3	0	0	0	0.03519	1	5578	5578		31.53	7.3271	1	834850			65140	7974	45908	45973	70339	70339					0.05383957329195255
RADYVVHGTSL	11	Unmodified	_RADYVVHGTSL_					0	0	0			REV__ENSG00000283439|ENST00000636696|SPEM3	REV__ENSG00000283439|ENST00000636696|SPEM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.26373291015625	3	406.547288	1216.62004	-1.5153	-0.00061606	3.4729	0.0014119	1.9576	0.00079584	406.54808448079456	21.457	0.29361	21.244	21.069	21.363	-0.2128					7	5	2	0	0	0	0.024723	1	643	643		22.562	0.87584	1	18746	+		65141	29245	45909	45974	70340	70340					0.020390139036635446
RAEAESPDGPA	11	Unmodified	_RAEAESPDGPA_					0	0	0			REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.816650390625	2	550.25436	1098.49417	-0.66138	-0.00036393	2.9882	0.0016443	2.3268	0.0012803	550.2560102194747	47.777	0.55789	47.624	47.3	47.858	-0.15301					40	16	3	0	0	0	0.024749	1	4775	4775		25.574	6.4705	1	672720	+		65142	26127	45910	45975	70341	70341					-0.05114117672405882
RAEAESPDGPA	11	Unmodified	_RAEAESPDGPA_					0	0	0			REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.25436	1098.49417	-0.62885	-0.00034603	2.9397	0.0016176	2.3109	0.0012716	550.2559649495269	47.668	0.59171	47.668	47.252	47.843	0	0.025126	-0.00028377	NaN	31.53	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739880	+		65143	26127	45910	45975							-0.05114117672405882
RAEAESPDGPA	11	Unmodified	_RAEAESPDGPA_					0	0	0			REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	REV__nc|ENSG00000167302|Q96N21-2|TEPSIN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.25436	1098.49417	-1.273	-0.00070048	3.8279	0.0021063	2.5549	0.0014058	550.2565727642996	47.578	0.48155	47.637	47.319	47.8	0.059097	-0.0063076	0.00069368	NaN	31.53	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	715120	+		65144	26127	45910	45975							-0.05114117672405882
RAEAGRGIASL	11	Unmodified	_RAEAGRGIASL_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|69|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|69|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|69|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.7415161132812	2	550.812179	1099.60981	-0.61486	-0.00033867	4.4914	0.0024739	3.8765	0.0021352	550.8140923627908	66.392	0.34684	66.11	65.866	66.213	-0.28148					19	8	3	0	0	0	0.024789	1	7833	7833		66.92	20.463	1	463070			65145	17853	45911	45976	70342	70342					0.06398450969072655
RAECKMLLN	9	Unmodified	_RAECKMLLN_					0	0	0		EML4-MTA3|1|fusion;nc|ENSG00000057935|Q9BTC8-2|MTA3	EML4-MTA3|1|fusion	EML4-MTA3|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2962646484375	2	539.280812	1076.54707	-0.52382	-0.00028248	-2.9385	-0.0015847	-3.4623	-0.0018672	539.7812441377038	58.294	0.22624	58.386	58.297	58.523	0.091217					6	5	2	0	0	0	0.024418	1	6509	6509		30.318	4.7437	1	237830			65146	707	45912	45977	70343	70343					0.01185845585041534
RAECKMLLN	9	Oxidation (M)	_RAECKM(Oxidation (M))LLN_		RAECKM(1)LLN		RAECKM(61)LLN	0	0	1		EML4-MTA3|1|fusion;nc|ENSG00000057935|Q9BTC8-2|MTA3	EML4-MTA3|1|fusion	EML4-MTA3|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2767333984375	2	547.278269	1092.54198	-1.3266	-0.00072604	-1.1679	-0.00063915	-2.4945	-0.0013652	547.2776517357272	29.205	0.69212	28.96	28.665	29.357	-0.24524					38	15	3	0	0	0	0.4752	1	1771	1771		60.972	6.1956	1	699820			65147	707	45912	45978	70344	70344		19			-0.0005845827759003441
RAECKMLLN	9	Oxidation (M)	_RAECKM(Oxidation (M))LLN_		RAECKM(1)LLN		RAECKM(79)LLN	0	0	1		EML4-MTA3|1|fusion;nc|ENSG00000057935|Q9BTC8-2|MTA3	EML4-MTA3|1|fusion	EML4-MTA3|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.27685546875	2	547.278269	1092.54198	-0.56494	-0.00030918	-1.8777	-0.0010276	-2.4426	-0.0013368	547.2770868586032	29.126	0.68391	28.954	28.681	29.365	-0.17258					37	15	4	0	0	0	0.27161	1	1759	1759		79.451	9.8234	1	695750			65148	707	45912	45978	70345	70345		19			-0.0005845827759003441
RAEDSGEYH	9	Unmodified	_RAEDSGEYH_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.7642822265625	2	532.225602	1062.43665	-1.0191	-0.00054241	4.3642	0.0023227	3.345	0.0017803	532.2278889950754	44.948	0.44794	44.848	44.672	45.12	-0.099445					15	11	2	0	0	0	0.024506	1	4226	4226		30.504	5.0535	1	119670			65149	6540	45913	45979	70346	70346					-0.09206959878019916
RAEDSGEYHCV	11	Unmodified	_RAEDSGEYHCV_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.51324462890625	3	422.512026	1264.51425	-0.41338	-0.00017466	2.1167	0.00089435	1.7034	0.00071969	422.5134879358354	31.908	1.7161	31.92	31.545	33.261	0.011797					158	44	6	0	0	0	1.044	1	2128	2128		26.75	2.5179	1	32737000			65150	6540	45914	45980	70347	70347					-0.10742690004121869
RAEDSGEYHCV	11	Unmodified	_RAEDSGEYHCV_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.5132141113281	3	422.512026	1264.51425	-0.11506	-4.8613E-05	1.8419	0.00077825	1.7269	0.00072963	422.51335710581304	31.637	1.8259	31.706	31.327	33.153	0.06896					157	46	7	0	0	0	1.053	1	2138	2138		24.276	0.89802	1	32141000			65151	6540	45914	45980	70348	70348					-0.10742690004121869
RAEEGADFGFA	11	Unmodified	_RAEEGADFGFA_					0	0	0		ENST00000517517.1_1_8:103244498-103250973:-|nuORF	ENST00000517517.1_1_8:103244498-103250973:-|nuORF	ENST00000517517.1_1_8:103244498-103250973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2628784179688	2	585.264727	1168.5149	-0.97172	-0.00056871	-2.9745	-0.0017409	-3.9462	-0.0023096	585.2629390186464	26.291	1.4985	26.055	25.843	27.341	-0.23603					113	38	4	0	0	0	1.0017	1	1404	1404		36.447	7.2767	1	5115100			65152	15913	45915	45981	70349	70349					-0.06261527292758728
RAEEGKSPF	9	Unmodified	_RAEEGKSPF_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.76361083984375	2	510.759081	1019.50361	3.8936	0.0019887	-0.56636	-0.00028927	3.3272	0.0016994	510.75862505439756	17.894	0.79521	17.643	17.371	18.167	-0.25049					34	15	4	0	0	0	0.39228	1	202	202		66.429	0.6261	1	315550			65153	8976	45916	45982	70350	70350					-0.005363045962326396
RAEGAFTL	8	Unmodified	_RAEGAFTL_					0	0	0		nc|ENSG00000143416|Q13228-4|SELENBP1	nc|ENSG00000143416|Q13228-4|SELENBP1	nc|ENSG00000143416|Q13228-4|SELENBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.7318420410156	2	432.732335	863.450116	0.26426	0.00011436	-1.3347	-0.00057759	-1.0705	-0.00046323	432.731609240746	98.399	2.1324	98.399	97.814	99.946	0					148	49	4	0	0	0	1.0106	1	12641	12641		35.618	1.4457	1	3598600			65154	18345	45917	45983	70351	70351					0.012929426919072284
RAEGGHAR	8	Unmodified	_RAEGGHAR_					0	0	0		ENST00000464348.5_1_1:201804144-201816433:+|nuORF	ENST00000464348.5_1_1:201804144-201816433:+|nuORF	ENST00000464348.5_1_1:201804144-201816433:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2537536621094	2	427.223	852.431447	-0.32981	-0.0001409	-3.5655	-0.0015233	-3.8953	-0.0016642	427.22140223718714	23.146	0.85641	23.222	22.748	23.604	0.076239					27	19	2	0	0	0	0.027866	1	821	821		44.117	24.757	1	148870			65155	14760	45918	45984	70352	70352					-0.0006717415930097559
RAEIRSLTL	9	Unmodified	_RAEIRSLTL_					0	0	0			REV__ENST00000499430.6_1_4:4544123-4544165:+|nuORF	REV__ENST00000499430.6_1_4:4544123-4544165:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2982177734375	2	529.819473	1057.62439	-0.67476	-0.0003575	3.3855	0.0017937	2.7107	0.0014362	529.8208415697657	52.029	0.77942	52.121	51.823	52.602	0.091938					32	15	3	0	0	0	0.02435	1	5465	5465		34.173	6.2903	1	355940	+		65156	33897	45919	45985	70353	70353					0.09788523117231307
RAELAGAL	8	Unmodified	_RAELAGAL_					0	0	0		nc|ENSG00000177548|Q9H5N1-2|RABEP2;ENSG00000177548|ENST00000358201|RABEP2;ENST00000562590.5_1_16:28922190-28936514:-|nuORF;ENST00000562475.5_1_16:28929220-28935949:-|nuORF;ENST00000564579.1_1_16:28931058-28935949:-|nuORF;ENST00000570030.1_1_16:28931058-28936514:-|nuORF;ENST00000561803.5_1_16:28927516-28936514:-|nuORF	nc|ENSG00000177548|Q9H5N1-2|RABEP2	nc|ENSG00000177548|Q9H5N1-2|RABEP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.88775634765625	2	400.734877	799.455202	0.1915	7.6742E-05	-0.35166	-0.00014092	-0.16015	-6.4179E-05	400.73474078201735	30.808	0.71465	30.82	30.584	31.299	0.011797					22	16	2	0	0	0	0.027866	1	1961	1961		16.473	3.514	1	67746			65157	8751	45920	45986	70354	70354					0.047452465545120504
RAELDLKVK	9	Unmodified	_RAELDLKVK_					0	0	0			REV__ENSG00000104129|ENST00000220496|DNAJC17	REV__ENSG00000104129|ENST00000220496|DNAJC17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3292236328125	2	536.329673	1070.64479	1.5633	0.00083843	-2.3342	-0.0012519	-0.77095	-0.00041348	536.3284676516844	19.038	1.3354	18.805	18.533	19.868	-0.23345					74	26	5	0	0	0	0.19099	1	363	363		90.37	5.4543	1	7075300	+		65158	21419	45921	45987	70355	70355					0.11229693777045213
RAELLRALP	9	Unmodified	_RAELLRALP_					0	0	0		ENSG00000181786|ENST00000324436|ACTL9	ENSG00000181786|ENST00000324436|ACTL9	ENSG00000181786|ENST00000324436|ACTL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7664794921875	2	519.824558	1037.63456	-0.81508	-0.0004237	2.9525	0.0015348	2.1374	0.0011111	519.8254681396631	47.751	0.48201	47.751	47.361	47.843	0					22	14	2	0	0	0	0.024	1	4796	4796		45.952	3.4775	1	161050			65159	9068	45922	45988	70356	70356					0.11725130842455656
RAELWPRA	8	Unmodified	_RAELWPRA_					0	0	0			REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7795104980469	2	499.780151	997.545748	-0.64303	-0.00032137	0.65071	0.00032521	0.0076832	3.8399E-06	499.78017499512595	32.711	0.89037	32.723	32.338	33.228	0.011787					69	23	4	0	0	0	0.68535	1	2291	2291		68.485	0.99103	1	3756100	+		65160	29542	45923	45989	70357	70357					0.046877156027903766
RAEQEGDDSL	10	Unmodified	_RAEQEGDDSL_					0	0	0		nc|ENSG00000162614|Q0ZGT2-2|NEXN	nc|ENSG00000162614|Q0ZGT2-2|NEXN	nc|ENSG00000162614|Q0ZGT2-2|NEXN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.271484375	2	560.249274	1118.484	-0.68555	-0.00038408	2.9406	0.0016475	2.2551	0.0012634	560.2508953973357	93.266	0.25147	93.262	93.159	93.41	-0.0042038					8	5	2	0	0	0	0.03519	1	11829	11829		60.118	0	1	106130			65161	18436	45924	45990	70358	70358					-0.07050725397652968
RAEQLASVQYT	11	Unmodified	_RAEQLASVQYT_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	633.3703002929688	2	633.327859	1264.64116	1.1829	0.00074917	-4.1542	-0.002631	-2.9713	-0.0018818	633.3250865643562	95.854	1.7913	95.861	95.222	97.013	0.0065079					100	41	3	0	0	0	0.024787	1	12245	12245		41.427	14.631	1	197660			65162	2543	45925	45991	70359	70359					0.01942979212526552
RAEQLASVQYT	11	Unmodified	_RAEQLASVQYT_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	633.3723754882812	2	633.327859	1264.64116	0.65314	0.00041365	-3.3506	-0.0021221	-2.6975	-0.0017084	633.3255496993439	95.915	2.6343	95.917	95.094	97.728	0.0020752					102	60	2	0	0	0	0.024765	1	12198	12198		41.427	3.6151	1	243880			65163	2543	45925	45991	70360	70360					0.01942979212526552
RAEQLAVVSH	10	Unmodified	_RAEQLAVVSH_					0	0	0			REV__ENST00000470046.1_1_22:50881704-50882673:+|nuORF	REV__ENST00000470046.1_1_22:50881704-50882673:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.289306640625	2	555.306729	1108.59891	-0.48079	-0.00026698	4.4541	0.0024734	3.9733	0.0022064	555.3090602631263	67.397	0.43533	67.109	66.911	67.347	-0.28835					22	10	3	0	0	0	0.03519	1	8037	8037		39.253	0	1	137040	+		65164	33144	45926	45992	70361	70361					0.04895048594812579
RAEQSPQP	8	Unmodified	_RAEQSPQP_					0	0	0		nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	nc|ENSG00000204642|P30511-2|HLA-F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2583312988281	2	456.730323	911.446094	0.2406	0.00010989	4.163	0.0019014	4.4036	0.0020113	456.7321936081215	61.818	0.67393	61.591	61.375	62.049	-0.22663					28	17	2	0	0	0	0.027866	1	7116	7116		45.952	0	1	142830			65165	18664	45927	45993	70362	70362					-0.013171468018072119
RAERTCSLNN	10	Unmodified	_RAERTCSLNN_					0	0	0		ENSG00000133863|ENST00000643185|TEX15	ENSG00000133863|ENST00000643185|TEX15	ENSG00000133863|ENST00000643185|TEX15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.2810668945312	2	582.282928	1162.5513	-0.34138	-0.00019878	-2.9648	-0.0017263	-3.3062	-0.0019251	582.2809983579807	49.496	0.82384	49.315	49.04	49.864	-0.18071					50	21	3	0	0	0	0.86389	1	4968	4968		56.434	1.6575	1	2656600			65166	4736	45928	45994	70363	70363					-0.023469736676815955
RAETLEEELY	10	Unmodified	_RAETLEEELY_					0	0	0			REV__ITPKB|p.K758E|1|0.07|ENSG00000143772|chr1:226642100-226642100|T/C|missense_variant	REV__ITPKB|p.K758E|1|0.07|ENSG00000143772|chr1:226642100-226642100|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	626.8063354492188	2	626.806425	1251.5983	-0.37953	-0.00023789	0.016332	1.0237E-05	-0.3632	-0.00022765	626.8067608866869	110.19	1.1048	110.19	109.85	110.96	0.0059204					73	37	3	0	0	0	1.1307	1	13917	13917		26.693	1.1189	1	106000	+		65167	36160	45929	45995	70364	70364					-0.017438356355796714
RAEVTVNAK	9	Unmodified	_RAEVTVNAK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2772521972656	2	494.282723	986.550893	-0.79581	-0.00039336	0.16072	7.9441E-05	-0.63509	-0.00031391	494.2827126902017	20.444	0.52883	20.444	20.127	20.656	0					18	10	2	0	0	0	0.024374	1	555	555		40.778	11.629	1	200370	+		65168	25017	45930	45996	70365	70365					0.057079746747604077
RAEYKIRR	8	Unmodified	_RAEYKIRR_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8036499023438	2	546.325257	1090.63596	-0.39784	-0.00021735	-0.73257	-0.00040022	-1.1304	-0.00061757	546.3247030846973	21.925	0.24173	21.734	21.564	21.806	-0.19072					6	4	2	0	0	0	0.027866	1	727	727		11.511	7.5258	1	9000.9	+		65169	25659	45931	45997	70366	70366					0.09426764931231446
RAEYKIRR	8	Unmodified	_RAEYKIRR_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.325257	1090.63596	-1.2302	-0.00067206	0.24066	0.00013148	-0.98949	-0.00054058	546.325418259427	21.841	0.14595	21.628	21.506	21.652	-0.2128	-0.053161	7.538E-05	NaN	11.511	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12103	+		65170	25659	45931	45997							0.09426764931231446
RAFALEEP	8	Unmodified	_RAFALEEP_					0	0	0			REV__ENSG00000147536|ENST00000276533|GINS4	REV__ENSG00000147536|ENST00000276533|GINS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8934326171875	2	466.745442	931.476331	-0.73574	-0.0003434	0.94131	0.00043935	0.20557	9.5949E-05	466.7452678762548	30.174	0.50943	29.996	29.655	30.164	-0.17818					18	11	2	0	0	0	0.027866	1	1883	1883		25.45	0	1	72947	+		65171	24562	45932	45998	70367	70367					0.007852118633650207
RAFGIPIRV	9	Unmodified	_RAFGIPIRV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.8216552734375	2	514.821818	1027.62908	-0.52684	-0.00027123	0.090949	4.6823E-05	-0.43589	-0.0002244	514.8217192743128	56.567	1.1821	56.567	56.314	57.496	0					86	32	4	0	0	0	0.12602	1	6321	6321		104.75	16.992	1	3929600			65172	8022	45933	45999	70368	70368					0.11637452050649699
RAFGIPIRV	9	Unmodified	_RAFGIPIRV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8217163085938	2	514.821818	1027.62908	-0.59286	-0.00030522	-0.01438	-7.4034E-06	-0.60724	-0.00031262	514.8216817149673	56.719	1.3064	56.554	56.313	57.619	-0.16431					79	35	4	0	0	0	0.096521	1	6308	6308		111.65	26.289	1	4355000			65173	8022	45933	45999	70369	70369					0.11637452050649699
RAFGIPIRV	9	Unmodified	_RAFGIPIRV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.8218383789062	2	514.821818	1027.62908	-0.85294	-0.00043911	0.35346	0.00018197	-0.49948	-0.00025714	514.8218491889919	56.431	1.1858	56.529	56.246	57.432	0.097893					78	32	4	0	0	0	0.072054	2	6217	6217;6230		120.62	17.848	1	4117300			65174	8022	45933	45999	70370;70371	70370					0.11637452050649699
RAFGIPIRV	9	Unmodified	_RAFGIPIRV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.821818	1027.62908	-0.23809	-0.00012257	-0.68228	-0.00035125	-0.92037	-0.00047383	514.8209628996399	56.631	0.57383	56.463	56.284	56.858	-0.1672	-0.057113	-0.00079223	NaN	120.62	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371920			65175	8022	45933	45999							0.11637452050649699
RAFGIPIRV	9	Unmodified	_RAFGIPIRV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.821818	1027.62908	0.27282	0.00014045	-1.5758	-0.00081126	-1.303	-0.00067081	514.8208537539767	56.695	0.45653	56.493	56.327	56.783	-0.20209	-0.027821	-0.0017122	NaN	120.62	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280660			65176	8022	45933	45999							0.11637452050649699
RAFGIPIRV	9	Unmodified	_RAFGIPIRV_					0	0	0		ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.821818	1027.62908	0.40545	0.00020874	-1.2161	-0.00062606	-0.81063	-0.00041733	514.8207644416578	56.742	0.42964	56.517	56.347	56.776	-0.22479	-0.0034938	-0.0013419	NaN	120.62	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234990			65177	8022	45933	45999							0.11637452050649699
RAFIVNLMQ	9	Unmodified	_RAFIVNLMQ_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8038330078125	2	546.305144	1090.59573	-0.82735	-0.00045198	0.80901	0.00044196	-0.018342	-1.002E-05	546.3055296503785	45.257	0.85755	45.046	44.327	45.185	-0.21109					32	22	2	0	0	0	0.024405	1	4241	4241		27.882	0	1	1917600	+		65178	20345	45934	46000	70372	70372					0.054060822164274214
RAFLPIKLP	9	Unmodified	_RAFLPIKLP_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3550415039062	2	527.84222	1053.66989	-0.34684	-0.00018307	-3.9508	-0.0020854	-4.2976	-0.0022685	527.8403101139934	50.661	0.57011	50.511	50.256	50.826	-0.14916					25	16	2	0	0	0	0.024436	1	5271	5271		23.042	0	1	349150			65179	7177	45935	46001	70373	70373					0.14519793370277512
RAFMEALSI	9	Unmodified	_RAFMEALSI_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.8109130859375	2	519.276052	1036.53755	-1.2458	-0.0006469	2.6017	0.001351	1.356	0.00070412	519.277377154807	60.633	0.44672	60.633	60.437	60.884	0					18	11	2	0	0	0	0.024405	1	6975	6975		27.882	0	1	131820	+		65180	24388	45936	46002	70374	70374					0.020744005711549107
RAFPLTLEV	9	Unmodified	_RAFPLTLEV_					0	0	0			REV__ENSG00000168676|ENST00000304372|KCTD19	REV__ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3033447265625	2	523.305667	1044.59678	-0.67906	-0.00035536	-3.7035	-0.001938	-4.3825	-0.0022934	523.3036531837259	85.156	2.651	85.182	83.64	86.291	0.025536					197	62	4	0	0	0	0.67687	1	10621	10621		47.657	1.6851	1	2957200	+		65181	26282	45937	46003	70375	70375					0.0762661985700106
RAFQWDPQQP	10	Unmodified	_RAFQWDPQQP_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.1949157714844	3	424.875516	1271.60472	0.52537	0.00022322	-3.4878	-0.0014819	-2.9624	-0.0012587	425.2085044425073	22.846	0.65358	22.657	22.374	23.027	-0.18894					33	13	3	0	0	0	0.03519	1	830	830		19.263	0	1	106470			65182	3535	45938	46004	70376	70376					-0.02021852893540199
RAFRLRPG	8	Unmodified	_RAFRLRPG_					0	0	0		ENST00000356208.9_1_20:55983003-55983105:+|nuORF	ENST00000356208.9_1_20:55983003-55983105:+|nuORF	ENST00000356208.9_1_20:55983003-55983105:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7516174316406	2	486.796135	971.577717	-0.4324	-0.00021049	4.0157	0.0019548	3.5833	0.0017443	486.7981760509327	75.126	0.47093	75.137	74.855	75.326	0.010376					17	11	2	0	0	0	0.027866	1	9153	9153		52.299	30.339	1	53770			65183	12661	45939	46005	70377	70377					0.09079128076598408
RAFSEDKAL	9	Unmodified	_RAFSEDKAL_					0	0	0		ARHGAP39|p.E607K|1|0.29|ENSG00000147799|chr8:144547267-144547267|C/T|missense_variant	ARHGAP39|p.E607K|1|0.29|ENSG00000147799|chr8:144547267-144547267|C/T|missense_variant	ARHGAP39|p.E607K|1|0.29|ENSG00000147799|chr8:144547267-144547267|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.3243408203125	2	518.774731	1035.53491	-0.24648	-0.00012787	1.2395	0.00064302	0.99302	0.00051515	518.7751707607748	40.882	0.7089	40.882	40.516	41.225	0					49	19	4	0	0	0	0.023454	1	3647	3647		52.937	10.541	1	826500			65184	124	45940	46006	70378	70378					0.018562684378366612
RAFSEDKAL	9	Unmodified	_RAFSEDKAL_					0	0	0		ARHGAP39|p.E607K|1|0.29|ENSG00000147799|chr8:144547267-144547267|C/T|missense_variant	ARHGAP39|p.E607K|1|0.29|ENSG00000147799|chr8:144547267-144547267|C/T|missense_variant	ARHGAP39|p.E607K|1|0.29|ENSG00000147799|chr8:144547267-144547267|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.3244018554688	2	518.774731	1035.53491	-0.50409	-0.00026151	1.2328	0.00063956	0.72874	0.00037805	518.7752029992703	41.058	0.70009	41.081	40.764	41.464	0.023006					41	18	3	0	0	0	0.02435	1	3652	3652		26.693	0	1	916110			65185	124	45940	46006	70379	70379					0.018562684378366612
RAFTAPIW	8	Unmodified	_RAFTAPIW_					0	0	0			REV__ENSG00000182544|ENST00000329548|MFSD5	REV__ENSG00000182544|ENST00000329548|MFSD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.77777099609375	2	481.266345	960.518136	-0.26826	-0.00012911	2.674	0.0012869	2.4057	0.0011578	481.2674131729159	56.24	0.43214	56.084	55.852	56.284	-0.15601					18	11	2	0	0	0	0.027866	1	6261	6261		19.36	5.5846	1	212300	+		65186	27487	45941	46007	70380	70380					0.03629812342569494
RAFVKKPI	8	Unmodified	_RAFVKKPI_					0	0	0		ENST00000259883.3_1_6:28249556-28249685:+|nuORF	ENST00000259883.3_1_6:28249556-28249685:+|nuORF	ENST00000259883.3_1_6:28249556-28249685:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.800048828125	2	479.813462	957.612371	-0.19863	-9.5304E-05	0.77919	0.00037387	0.58056	0.00027856	479.81274529893585	27.13	0.28839	27.117	26.953	27.241	-0.012983					10	7	2	0	0	0	0.027866	1	1425	1425		76.847	26.822	1	66773			65187	11440	45942	46008	70381	70381					0.13186951164698257
RAFVLSVPSAR	11	Unmodified	_RAFVLSVPSAR_					0	0	0		ENST00000549478.1_1_12:104350574-104350781:-|nuORF	ENST00000549478.1_1_12:104350574-104350781:-|nuORF	ENST00000549478.1_1_12:104350574-104350781:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.572021484375	3	401.571657	1201.69314	-1.2093	-0.00048561	1.6447	0.00066046	0.43541	0.00017485	401.5722300164285	33.322	1.3812	33.156	32.679	34.06	-0.16565					87	34	4	0	0	0	0.9703	1	2377	2377		43.419	4.6649	1	1890600			65188	16568	45943	46009	70382	70382					0.10036187416926623
RAGAAFFNEV	10	Unmodified	_RAGAAFFNEV_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2764282226562	2	541.274898	1080.53524	-0.11054	-5.9833E-05	-0.83581	-0.0004524	-0.94635	-0.00051224	541.2744058638661	16.986	0.22334	16.844	16.711	16.934	-0.14278					14	7	2	0	0	0	1.1131	1	109	109		17.468	0.10304	1	37416			65189	4509	45944	46010	70383	70383					-0.001803118423140404
RAGAARLLLL	10	Unmodified	_RAGAARLLLL_					0	0	0		ENST00000257359.6_1_11:130297588-130298293:-|nuORF	ENST00000257359.6_1_11:130297588-130298293:-|nuORF	ENST00000257359.6_1_11:130297588-130298293:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7997436523438	2	527.3482	1052.68185	-1.1322	-0.00059708	-2.6299	-0.0013869	-3.7621	-0.001984	527.3466684375617	84.08	0.72777	84.08	83.735	84.463	0					38	16	3	0	0	0	0.03519	1	10504	10504		14.865	0	1	535270			65190	11405	45945	46011	70384	70384					0.1576141011346408
RAGADIIIT	9	Unmodified	_RAGADIIIT_					0	0	0		ENSG00000148218|ENST00000409155|ALAD;nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF	ENSG00000148218|ENST00000409155|ALAD	ENSG00000148218|ENST00000409155|ALAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.77752685546875	2	465.274367	928.53418	0.091586	4.2612E-05	-1.7121	-0.00079659	-1.6205	-0.00075398	465.2733766854413	49.62	0.66368	49.62	49.249	49.913	0					26	17	2	0	0	0	0.024263	1	5093	5093		34.173	19.308	1	200300			65191	6010	45946	46012	70385	70385					0.06705473788792915
RAGAELRAVL	10	Unmodified	_RAGAELRAVL_					0	0	0		ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.318603515625	2	528.31964	1054.62473	-0.69023	-0.00036466	0.31421	0.000166	-0.37602	-0.00019866	528.3197624711897	39.261	0.69227	39.261	39.041	39.733	0					57	19	4	0	0	0	0.59716	1	3358	3358		77.318	7.69	1	3972500			65192	8639	45947	46013	70386	70386					0.09959942837076596
RAGAGRSTL	9	Unmodified	_RAGAGRSTL_					0	0	0		ENST00000565695.2_1_6:101329383-101329548:+|nuORF	ENST00000565695.2_1_6:101329383-101329548:+|nuORF	ENST00000565695.2_1_6:101329383-101329548:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.25103759765625	2	444.754133	887.493713	-1.1464	-0.00050988	-3.3393	-0.0014851	-4.4857	-0.001995	444.75271729976924	29.169	1.5655	29.169	28.778	30.343	0					85	38	5	0	0	0	0.023239	1	1739	1739		54.776	0	1	64616000			65193	16926	45948	46014	70387	70387					0.04546552189037811
RAGALRAR	8	Unmodified	_RAGALRAR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	435.77266	869.530767	-0.20586	-8.9708E-05	2.8686	0.0012501	2.6627	0.0011603	435.7738798563997	48.926	0.3948	48.773	48.646	49.041	-0.15277					13	10	2	0	0	0	0.027866	1	4991	4991		24.203	0	1	77703			65194	4585	45949	46015	70388	70388					0.09078268525456679
RAGALRAR	8	Unmodified	_RAGALRAR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7799987792969	2	435.77266	869.530767	0.022571	9.8359E-06	1.9457	0.00084789	1.9683	0.00085773	435.7744459181265	42.64	0.33934	42.414	42.22	42.559	-0.22597					11	8	2	0	0	0	0.027866	1	3846	3846		17.365	0	1	37648			65195	4585	45949	46015	70389	70389					0.09078268525456679
RAGARPRRR	9	Unmodified	_RAGARPRRR_					0	0	0		nc|ENSG00000274523|Q96I51-2|RCC1L;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.3182373046875	2	548.339564	1094.66457	0.75288	0.00041283	3.9672	0.0021754	4.7201	0.0025882	548.341453600471	99.733	1.1609	99.608	98.635	99.796	-0.12459					60	30	3	0	0	0	0.024457	1	12378	12378		15.642	0	1	532850			65196	11030	45950	46016	70390	70390					0.12102927351020298
RAGDWRRRAR	10	Unmodified	_RAGDWRRRAR_					0	0	0		ENST00000530275.2_1_1:39874930-39875044:+|nuORF	ENST00000530275.2_1_1:39874930-39875044:+|nuORF	ENST00000530275.2_1_1:39874930-39875044:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.9144287109375	3	433.913299	1298.71807	0.015412	6.6876E-06	1.8546	0.00080472	1.87	0.00081141	433.9141210862794	41.663	1.4942	41.538	41.187	42.681	-0.12489					104	39	4	0	0	0	0.78438	3	3686	3686;3695;3707		61.691	13.09	1	7214600			65197	16230	45951	46017	70391;70392;70393	70391					0.08065680062873071
RAGDWRRRAR	10	Unmodified	_RAGDWRRRAR_					0	0	0		ENST00000530275.2_1_1:39874930-39875044:+|nuORF	ENST00000530275.2_1_1:39874930-39875044:+|nuORF	ENST00000530275.2_1_1:39874930-39875044:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.914306640625	3	433.913299	1298.71807	-0.26381	-0.00011447	2.0413	0.00088576	1.7775	0.00077128	433.9142004927514	41.908	1.4548	41.676	41.351	42.806	-0.23186					100	38	4	0	0	0	0.65479	3	3718	3708;3718;3730		70.816	17.219	1	7828100			65198	16230	45951	46017	70394;70395;70396	70395					0.08065680062873071
RAGDWRRRAR	10	Unmodified	_RAGDWRRRAR_					0	0	0		ENST00000530275.2_1_1:39874930-39875044:+|nuORF	ENST00000530275.2_1_1:39874930-39875044:+|nuORF	ENST00000530275.2_1_1:39874930-39875044:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.91436767578125	3	433.913299	1298.71807	0.29599	0.00012844	1.432	0.00062137	1.728	0.00074981	433.9139612299264	41.98	1.4746	41.75	41.394	42.869	-0.2303					102	39	4	0	0	0	0.83648	1	3711	3711		58.246	12.338	1	8046800			65199	16230	45951	46017	70397	70397					0.08065680062873071
RAGEHRAR	8	Unmodified	_RAGEHRAR_					0	0	0		ENST00000468573.5_1_1:239550009-239550420:+|nuORF	ENST00000468573.5_1_1:239550009-239550420:+|nuORF	ENST00000468573.5_1_1:239550009-239550420:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.7955017089844	2	476.762823	951.511094	-0.1563	-7.4517E-05	-1.7575	-0.00083792	-1.9138	-0.00091244	476.76184256464575	69.924	0.94003	69.936	69.131	70.071	0.012421					31	23	2	0	0	0	0.027866	1	8376	8376		12.959	0	1	146670			65200	14876	45952	46018	70398	70398					0.03339892514702569
RAGERSIET	9	Unmodified	_RAGERSIET_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.30999755859375	2	509.767437	1017.52032	-0.36137	-0.00018421	-3.2561	-0.0016599	-3.6175	-0.0018441	509.76517413950535	97.348	1.1943	97.348	96.704	97.898	0					36	26	2	0	0	0	0.024541	1	12492	12492		26.693	15.827	1	119800	+		65201	21560	45953	46019	70399	70399					0.012261962897241574
RAGERSIET	9	Unmodified	_RAGERSIET_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.767437	1017.52032	0.42018	0.0002142	-4.5637	-0.0023264	-4.1435	-0.0021122	509.7647294163838	97.273	1.0625	97.282	96.751	97.813	0.0089111	-0.070906	-0.0003555	NaN	26.693	41	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97989	+		65202	21560	45953	46019							0.012261962897241574
RAGERSIET	9	Unmodified	_RAGERSIET_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.767437	1017.52032	0.73982	0.00037714	-4.3326	-0.0022086	-3.5928	-0.0018315	509.7647428778918	97.43	1.1469	97.43	96.749	97.896	-3.0518E-05	0.076393	-0.0001199	NaN	26.693	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98681	+		65203	21560	45953	46019							0.012261962897241574
RAGFGAFSSVP	11	Unmodified	_RAGFGAFSSVP_					0	0	0		ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2984619140625	2	548.282723	1094.55089	-0.09255	-5.0744E-05	0.40066	0.00021968	0.30811	0.00016893	548.2829622687251	55.893	0.50935	55.677	55.372	55.881	-0.21607					20	13	2	0	0	0	0.02479	1	5980	5980		69.628	12.907	1	295320			65204	15420	45954	46020	70400	70400					0.00739974674752375
RAGGAAEAGA	10	Unmodified	_RAGGAAEAGA_					0	0	0			REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.7095947265625	2	415.709391	829.404229	-0.83536	-0.00034727	0.90737	0.0003772	0.072001	2.9931E-05	415.7097107306702	26.257	2.915	26.021	25.803	28.718	-0.23603					131	72	3	0	0	0	1.0616	1	1349	1349		37.812	2.1932	1	12481000	+		65205	19476	45955	46021	70401	70401					-0.017297024903427882
RAGGAAEAGA	10	Unmodified	_RAGGAAEAGA_					0	0	0			REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.7093200683594	2	415.709391	829.404229	-0.30723	-0.00012772	0.073528	3.0566E-05	-0.2337	-9.715E-05	415.70940807998153	26.102	2.1457	25.934	25.662	27.808	-0.16816					116	54	3	0	0	0	1.0992	1	1337	1337		32.812	3.6629	1	16521000	+		65206	19476	45955	46021	70402	70402					-0.017297024903427882
RAGGAAEAGA	10	Unmodified	_RAGGAAEAGA_					0	0	0			REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	REV__chr9:134433457-134434102|138|11.55|0.33|5.14|+|1|None,RXRA|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.7095947265625	2	415.709391	829.404229	-0.76263	-0.00031703	0.84191	0.00034999	0.079281	3.2958E-05	415.7097228923088	26.126	2.4926	25.963	25.457	27.95	-0.16331					138	63	4	0	0	0	1.0508	1	1294	1294		39.253	0.44669	1	18466000	+		65207	19476	45955	46021	70403	70403					-0.017297024903427882
RAGGWSSPAQP	11	Unmodified	_RAGGWSSPAQP_					0	0	0		ENST00000532635.5_1_11:67810750-67811081:+|nuORF	ENST00000532635.5_1_11:67810750-67811081:+|nuORF	ENST00000532635.5_1_11:67810750-67811081:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	556.3269653320312	2	557.275429	1112.53631	0.51675	0.00028797	4.2704	0.0023798	4.7871	0.0026678	557.2770932611531	58.88	1.3901	58.965	58.666	60.056	0.085686					79	37	4	0	0	0	0.02475	1	6792	6792		35.152	17.787	1	571020			65208	16296	45956	46022	70404	70404					-0.01546097473374175
RAGKTGPGLL	10	Unmodified	_RAGKTGPGLL_					0	0	0			REV__ENST00000368662.9_1_6:112407800-112408689:-|nuORF	REV__ENST00000368662.9_1_6:112407800-112408689:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.77484130859375	2	485.295633	968.576714	-0.69397	-0.00033678	0.064262	3.1186E-05	-0.62971	-0.00030559	485.2956992915343	23.491	0.29024	23.43	23.267	23.557	-0.060862					9	6	2	0	0	0	0.03519	1	905	905		10.866	0	1	12943	+		65209	31062	45957	46023	70405	70405					0.09116868917067222
RAGKTGPGLL	10	Unmodified	_RAGKTGPGLL_					0	0	0			REV__ENST00000368662.9_1_6:112407800-112408689:-|nuORF	REV__ENST00000368662.9_1_6:112407800-112408689:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.295633	968.576714	-0.73302	-0.00035573	1.2379	0.00060076	0.50492	0.00024503	485.29631130316994	23.392	0.25327	23.468	23.351	23.604	0.076241	0.018956	0.00060373	NaN	10.866	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26840	+		65210	31062	45957	46023							0.09116868917067222
RAGLALGPL	9	Unmodified	_RAGLALGPL_					0	0	0		ENST00000492289.5_1_22:45073049-45126704:+|nuORF	ENST00000492289.5_1_22:45073049-45126704:+|nuORF	ENST00000492289.5_1_22:45073049-45126704:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7592468261719	2	434.27417	866.533787	0.18751	8.1431E-05	2.7926	0.0012128	2.9801	0.0012942	434.27481961132037	86.742	1.2894	86.555	85.772	87.062	-0.18696					46	29	2	0	0	0	0.024325	1	10593	10593		31.955	5.1588	1	83920			65211	15480	45958	46024	70406	70406					0.09518098859598467
RAGLLKSIL	9	Unmodified	_RAGLLKSIL_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2613525390625	2	485.824027	969.633501	-0.99753	-0.00048462	0.37309	0.00018125	-0.62444	-0.00030337	485.8240526241464	38.127	0.41125	38.044	37.883	38.294	-0.082516					15	11	2	0	0	0	0.024381	1	3179	3179		21.96	9.753	1	91374	+		65212	28213	45959	46025	70407	70407					0.1474691647357531
RAGLLPSH	8	Unmodified	_RAGLLPSH_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77484130859375	2	425.748319	849.482085	-0.26373	-0.00011228	-4.0352	-0.001718	-4.2989	-0.0018302	425.74412077171434	42.207	0.39376	42.075	41.857	42.251	-0.13219					17	11	3	0	0	0	0.027866	1	3823	3823		12.207	0	1	230520			65213	5428	45960	46026	70408	70408					0.05132355165710578
RAGLLPSH	8	Unmodified	_RAGLLPSH_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7748718261719	2	425.748319	849.482085	0.1895	8.0677E-05	4.1488	0.0017663	4.3383	0.001847	425.7508441482136	42.105	0.29311	42.131	41.928	42.221	0.026012					12	8	2	0	0	0	0.027866	1	3758	3758		25.45	0	1	181360			65214	5428	45960	46026	70409	70409					0.05132355165710578
RAGLRAQP	8	Unmodified	_RAGLRAQP_					0	0	0		ENST00000309422.6_2_11:64005061-64005875:+|nuORF	ENST00000309422.6_2_11:64005061-64005875:+|nuORF	ENST00000309422.6_2_11:64005061-64005875:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.7708435058594	2	434.759218	867.503883	1.0625	0.00046194	-3.1833	-0.001384	-2.1208	-0.00092203	434.75852884305294	84.919	0.87426	84.919	84.669	85.543	0					26	20	2	0	0	0	0.027866	1	10716	10716		19.36	11.67	1	34379			65215	12043	45961	46027	70410	70410					0.06483159914273529
RAGLRAQP	8	Unmodified	_RAGLRAQP_					0	0	0		ENST00000309422.6_2_11:64005061-64005875:+|nuORF	ENST00000309422.6_2_11:64005061-64005875:+|nuORF	ENST00000309422.6_2_11:64005061-64005875:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	434.759218	867.503883	0.47392	0.00020604	-1.5841	-0.00068869	-1.1101	-0.00048265	434.7590475760903	85.289	0.36679	85.093	84.848	85.215	-0.19508	0.087225	0.00074001	NaN	12.959	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44779			65216	12043	45961	46027							0.06483159914273529
RAGLRGGPL	9	Unmodified	_RAGLRGGPL_					0	0	0			REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.25775146484375	2	448.774868	895.535184	0.12598	5.6536E-05	3.0922	0.0013877	3.2182	0.0014442	448.7760408186103	86.701	0.72681	86.564	86.268	86.995	-0.13734					27	16	2	0	0	0	0.024457	1	10486	10486		21.96	9.0007	1	165830	+		65217	29289	45962	46028	70411	70411					0.08323732948383622
RAGLRGGPL	9	Unmodified	_RAGLRGGPL_					0	0	0			REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.774868	895.535184	0.52157	0.00023407	2.876	0.0012907	3.3975	0.0015247	448.77587203485564	86.85	0.72045	86.85	86.474	87.194	0	0.13153	-0.00013155	NaN	21.96	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165270	+		65218	29289	45962	46028							0.08323732948383622
RAGLRGGPL	9	Unmodified	_RAGLRGGPL_					0	0	0			REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	448.774868	895.535184	0.20716	9.2967E-05	3.2963	0.0014793	3.5034	0.0015723	448.7760640124939	86.784	0.71632	86.805	86.504	87.22	0.021255	0.08704	0.00024569	NaN	21.96	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237830	+		65219	29289	45962	46028							0.08323732948383622
RAGPAGPGGAR	11	Unmodified	_RAGPAGPGGAR_					0	0	0		nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2923889160156	2	483.765032	965.515511	-0.39016	-0.00018874	3.755	0.0018165	3.3648	0.0016278	483.76646229020554	57.255	0.89177	57.088	56.714	57.606	-0.1672					56	23	4	0	0	0	0.024741	1	6319	6319		37.812	20.447	1	1447600			65220	18179	45963	46029	70412	70412					0.03137356937622826
RAGPAGPGGAR	11	Unmodified	_RAGPAGPGGAR_					0	0	0		nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.765032	965.515511	0.17663	8.5446E-05	2.6881	0.0013004	2.8647	0.0013858	483.76621889537364	57.342	0.68866	57.14	56.819	57.508	-0.20208	0.026315	-0.00026027	NaN	36.447	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1280400			65221	18179	45963	46029							0.03137356937622826
RAGPAWLLL	9	Unmodified	_RAGPAWLLL_					0	0	0		nc|ENSG00000065485|Q14554-2|PDIA5;ENSG00000065485|ENST00000316218|PDIA5	nc|ENSG00000065485|Q14554-2|PDIA5	nc|ENSG00000065485|Q14554-2|PDIA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.8026123046875	2	498.803094	995.591636	0.003186	1.5892E-06	-1.1816	-0.00058939	-1.1784	-0.0005878	498.80236030386783	99.639	0.46973	99.65	99.357	99.827	0.010231					29	10	4	0	0	0	0.64155	1	12713	12713		50.025	2.1089	1	329930			65222	1304	45964	46030	70413	70413					0.09366360785031702
RAGPELGSL	9	Unmodified	_RAGPELGSL_					0	0	0		ENST00000526183.5_1_8:145723359-145723767:+|nuORF	ENST00000526183.5_1_8:145723359-145723767:+|nuORF	ENST00000526183.5_1_8:145723359-145723767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.25079345703125	2	450.250892	898.48723	-0.82793	-0.00037277	1.2882	0.00058002	0.46029	0.00020724	450.251253886249	35.326	0.98486	35.305	34.866	35.851	-0.021763					81	25	5	0	0	0	0.22754	2	2693	2693;2702		85.359	0.44396	1	2248200			65223	16117	45965	46031	70414;70415	70414					0.03392614237657199
RAGPIHVT	8	Unmodified	_RAGPIHVT_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.2019958496094	2	425.748319	849.482085	0.23887	0.0001017	4.1019	0.0017464	4.3408	0.0018481	425.7474568584161	34.624	0.27944	34.4	34.179	34.459	-0.22412					10	6	2	0	0	0	0.027866	1	2546	2546		17.365	0	1	72252	+		65224	36945	45966	46032	70416	70416					0.05132355165721947
RAGPIKAQ	8	Unmodified	_RAGPIKAQ_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.5205078125	2	420.756144	839.497735	-0.10451	-4.3972E-05	-1.6026	-0.00067431	-1.7071	-0.00071828	420.75486283985856	31.929	0.75519	31.772	31.489	32.245	-0.15772					21	17	2	0	0	0	0.027866	1	2125	2125		11.511	10.306	1	117510			65225	3636	45967	46033	70417	70417					0.07156641682752252
RAGPIKKP	8	Unmodified	_RAGPIKKP_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.28668212890625	2	433.782162	865.549771	0.051445	2.2316E-05	-3.1003	-0.0013448	-3.0488	-0.0013225	433.781169398599	53.211	1.1326	53.064	52.287	53.42	-0.14723					38	29	2	0	0	0	0.027866	1	5608	5608		18.324	0	1	153250			65226	10346	45968	46034	70418	70418					0.11161805096514854
RAGPIKKP	8	Unmodified	_RAGPIKKP_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.780029296875	2	433.782162	865.549771	-0.47322	-0.00020527	1.1316	0.00049086	0.65836	0.00028559	433.782041062762	48.96	0.32266	48.68	48.538	48.861	-0.27977					17	8	3	0	0	0	0.027866	1	4897	4897		18.324	11.131	1	151050			65227	10346	45968	46034	70419	70419					0.11161805096514854
RAGPLAPK	8	Unmodified	_RAGPLAPK_					0	0	0			REV__ENST00000477724.6_2_14:105954580-105958516:+|nuORF	REV__ENST00000477724.6_2_14:105954580-105958516:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5111389160156	2	405.253237	808.491922	1.0026	0.00040629	-0.94277	-0.00038206	0.059798	2.4233E-05	405.25251153054916	32.172	0.34904	31.979	31.856	32.205	-0.19261					11	7	2	0	0	0	0.027866	1	2193	2193		19.36	0	1	43513	+		65228	33343	45969	46035	70420	70420					0.08001543171087633
RAGPLAPK	8	Unmodified	_RAGPLAPK_					0	0	0			REV__ENST00000477724.6_2_14:105954580-105958516:+|nuORF	REV__ENST00000477724.6_2_14:105954580-105958516:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5111083984375	2	405.253237	808.491922	-0.48852	-0.00019798	0.51222	0.00020758	0.023699	9.6042E-06	405.2532720232128	32.27	0.34033	32.112	31.904	32.245	-0.15772					12	7	2	0	0	0	0.027866	1	2182	2182		18.324	0	1	72175	+		65229	33343	45969	46035	70421	70421					0.08001543171087633
RAGPQAVL	8	Unmodified	_RAGPQAVL_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.887939453125	2	406.24287	810.471186	0.26772	0.00010876	0.52065	0.00021151	0.78836	0.00032027	406.2429642481721	33.661	0.62453	33.461	33.171	33.795	-0.20019					20	15	2	0	0	0	0.027866	1	2412	2412		25.45	0	1	146410			65230	18238	45970	46036	70422	70422					0.05836952791423755
RAGPRLGAT	9	Unmodified	_RAGPRLGAT_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1;REV__ENST00000531339.5_1_11:65414854-65417043:+|nuORF	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7536315917969	2	449.764501	897.514448	0.12773	5.745E-05	1.498	0.00067376	1.6258	0.00073121	449.7652425062024	65.764	0.21043	65.491	65.396	65.606	-0.27283					9	5	2	0	0	0	0.024506	1	7788	7788		10.866	0	1	63769	+		65231	28740;34553	45971	46037	70423	70423					0.06159142568697007
RAGPRRPVEL	10	Unmodified	_RAGPRRPVEL_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8433227539062	2	575.843813	1149.67307	-0.089209	-5.1371E-05	-0.75438	-0.00043441	-0.84359	-0.00048578	575.8431556288429	102.51	0.49976	102.52	102.28	102.78	0.0073471					32	11	4	0	0	0	1.118	1	13089	13089		30.318	1.1477	1	662980	+		65232	37075	45972	46038	70424	70424					0.10422436476983421
RAGPRRPVEL	10	Unmodified	_RAGPRRPVEL_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8431396484375	2	575.843813	1149.67307	-0.10957	-6.3095E-05	-1.3506	-0.00077775	-1.4602	-0.00084085	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0719	1	11382	11382		36.447	7.2767	1	4935500	+		65233	37075	45972	46038	70425	70425					0.10422436476983421
RAGQEAAQ	8	Unmodified	_RAGQEAAQ_					0	0	0			REV__nc|ENSG00000112303|O95498-6|VNN2	REV__nc|ENSG00000112303|O95498-6|VNN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.7094421386719	2	415.709391	829.404229	-0.30723	-0.00012772	0.073528	3.0566E-05	-0.2337	-9.715E-05	415.70940807998153	26.102	2.1457	25.934	25.662	27.808	-0.16816					116	54	3	0	0	0	1.0106	1	1361	1361		35.618	1.4457	1	16521000	+		65234	21991	45973	46039	70426	70426					-0.017297024903427882
RAGQLPLL	8	Unmodified	_RAGQLPLL_					0	0	0			REV__ENST00000397412.7_1_16:1664941-1676063:+|nuORF	REV__ENST00000397412.7_1_16:1664941-1676063:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.27392578125	2	434.27417	866.533787	-0.24981	-0.00010849	0.28183	0.00012239	0.032024	1.3907E-05	434.27424686284786	54.734	1.8656	54.588	53.858	55.723	-0.14609					94	52	4	0	0	0	0.65272	1	5809	5809		71.378	0	1	11941000	+		65235	31771	45974	46040	70427	70427					0.09518098859621205
RAGRAHLL	8	Unmodified	_RAGRAHLL_					0	0	0		ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.2400207519531	2	447.275035	892.535518	0.72154	0.00032273	-2.3912	-0.0010695	-1.6697	-0.0007468	447.2732272202467	54.45	0.44981	54.244	53.981	54.431	-0.20613					14	11	2	0	0	0	0.027866	1	5759	5759		54.765	10.234	1	100910			65236	8651	45975	46041	70428	70428					0.08495152668228911
RAGRLLDI	8	Unmodified	_RAGRLLDI_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2828369140625	2	457.282526	912.550499	-0.32332	-0.00014785	0.23185	0.00010602	-0.091467	-4.1826E-05	457.28249716074674	34.66	0.73167	34.453	34.16	34.892	-0.20696					48	17	4	0	0	0	1.0009	1	2579	2579		37.159	1.5408	1	2338600			65237	10117	45976	46042	70429	70429					0.09072599745559273
RAGRRRRPL	9	Unmodified	_RAGRRRRPL_					0	0	0		ENST00000295025.12_1_2:61108769-61108910:+|nuORF	ENST00000295025.12_1_2:61108769-61108910:+|nuORF	ENST00000295025.12_1_2:61108769-61108910:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3111572265625	2	569.363039	1136.71153	-0.35075	-0.00019971	-2.7931	-0.0015903	-3.1439	-0.00179	569.3615109198947	31.44	0.1469	31.287	31.232	31.379	-0.15231					5	3	2	0	0	0	0.024535	1	2079	2079		7.1934	0.8807	1	86751			65238	11823	45977	46043	70430	70430					0.1486378690217407
RAGRRWNG	8	Unmodified	_RAGRRWNG_					0	0	0		ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	ENST00000557348.5_1_12:57623887-57628141:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77703857421875	2	486.765366	971.516179	-1.3253	-0.0006451	-0.39541	-0.00019247	-1.7207	-0.00083758	486.76490442226816	30.209	0.48994	30.209	29.936	30.426	0					19	11	2	0	0	0	0.027866	1	1908	1908		12.207	0	1	226620			65239	16731	45978	46044	70431	70431					0.029281963773200914
RAGRVLPIA	9	Unmodified	_RAGRVLPIA_					0	0	0			REV__ENST00000561689.6_2_16:28488839-28493686:-|nuORF	REV__ENST00000561689.6_2_16:28488839-28493686:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7721862792969	2	476.806168	951.597784	0.38095	0.00018164	-0.37389	-0.00017827	0.0070652	3.3687E-06	476.80577486172746	24.354	0.99863	24.432	23.824	24.823	0.078344					39	21	3	0	0	0	0.024541	1	1034	1034		12.959	0	1	223710	+		65240	35177	45979	46045	70432	70432					0.12004879016569703
RAGSHMREI	9	Unmodified	_RAGSHMREI_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2392578125	2	528.772	1055.52945	-0.13952	-7.3774E-05	-2.3305	-0.0012323	-2.47	-0.0013061	528.771443401711	68.105	1.0886	67.817	67.511	68.6	-0.28834					77	27	4	0	0	0	0.022587	1	8089	8089		84.916	0	1	4461100	+		65241	19208	45980	46046	70433	70433					0.0039026637439292244
RAGSIVLKV	9	Unmodified	_RAGSIVLKV_					0	0	0		ENST00000602490.1_1_1:183599580-183599799:-|nuORF;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5	ENST00000602490.1_1_1:183599580-183599799:-|nuORF	ENST00000602490.1_1_1:183599580-183599799:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.8082275390625	2	471.808377	941.6022	0.65627	0.00030963	-0.63977	-0.00030185	0.016498	7.7838E-06	471.80798184376744	40.57	1.0797	40.57	40.281	41.36	0					76	30	4	0	0	0	0.32064	1	3579	3579		72.879	1.5013	1	8176800			65242	6980	45981	46047	70434	70434					0.12906343439476586
RAGSVKRK	8	Unmodified	_RAGSVKRK_					0	0	0		ENST00000544612.5_1_11:94226853-94227039:+|nuORF	ENST00000544612.5_1_11:94226853-94227039:+|nuORF	ENST00000544612.5_1_11:94226853-94227039:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7608642578125	2	451.288143	900.561733	-0.080942	-3.6528E-05	2.5691	0.0011594	2.4882	0.0011229	451.2890684637359	38.999	0.3835	38.773	38.6	38.983	-0.2257					13	10	2	0	0	0	0.027866	1	3279	3279		23.042	4.7181	1	204760			65243	16480	45982	46048	70435	70435					0.10747421839710114
RAGTRILKG	9	Unmodified	_RAGTRILKG_					0	0	0			REV__ENSG00000060069|ENST00000613122|CTDP1	REV__ENSG00000060069|ENST00000613122|CTDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2921447753906	2	486.309075	970.603597	0.38809	0.00018873	0.77393	0.00037637	1.162	0.0005651	486.30984535359863	81.984	0.38405	81.755	81.65	82.034	-0.2289					13	8	2	0	0	0	0.024418	1	9891	9891		54.776	20.604	1	114250	+		65244	20248	45983	46049	70436	70436					0.11711977528227635
RAGVKGAAF	9	Unmodified	_RAGVKGAAF_					0	0	0		CON__Q6IME9	CON__Q6IME9	CON__Q6IME9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.7565612792969	2	438.756144	875.497735	0.35176	0.00015434	-0.016322	-7.1613E-06	0.33544	0.00014717	438.7560123278091	40.963	1.0971	40.963	40.728	41.825	0					68	30	4	0	0	0	0.78069	1	3641	3641		40.573	1.7665	1	3675600		+	65245	560	45984	46050	70437	70437					0.05500641682760943
RAGVPTLL	8	Unmodified	_RAGVPTLL_					0	0	0			REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.26910400390625	2	413.760895	825.507237	-0.055788	-2.3083E-05	-3.2817	-0.0013579	-3.3375	-0.0013809	413.75947285403106	28.356	0.21603	28.352	28.242	28.458	-0.0042019					5	4	2	0	0	0	0.027866	1	1639	1639		25.45	6.0902	1	45180	+		65246	33924	45985	46051	70438	70438					0.0875040996829739
RAGVQLSGL	9	Unmodified	_RAGVQLSGL_					0	0	0		ENST00000395103.2_1_8:144806522-144808011:-|nuORF	ENST00000395103.2_1_8:144806522-144808011:-|nuORF	ENST00000395103.2_1_8:144806522-144808011:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7670593261719	2	450.766709	899.518865	0.059998	2.7045E-05	-0.50959	-0.00022971	-0.44959	-0.00020266	450.7664617180392	35.299	0.74337	35.084	34.753	35.496	-0.21555					57	18	4	0	0	0	0.23085	1	2687	2687		84.916	5.4645	1	8007400			65247	13503	45986	46052	70439	70439					0.06508606991610577
RAGVTLSD	8	Unmodified	_RAGVTLSD_					0	0	0			REV__ENST00000316881.8_1_17:54965952-54966114:-|nuORF	REV__ENST00000316881.8_1_17:54965952-54966114:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.7500915527344	2	409.721967	817.429381	-0.90688	-0.00037157	0.74474	0.00030514	-0.16214	-6.6434E-05	409.72215771320134	37.894	0.58307	37.675	37.5	38.083	-0.21848					22	16	2	0	0	0	0.027866	1	3079	3079		71.296	11.002	1	164750	+		65248	30288	45987	46053	70440	70440					0.013363523122393417
RAGVTLSD	8	Unmodified	_RAGVTLSD_					0	0	0			REV__ENST00000316881.8_1_17:54965952-54966114:-|nuORF	REV__ENST00000316881.8_1_17:54965952-54966114:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	409.721967	817.429381	-0.056674	-2.3221E-05	-0.46475	-0.00019042	-0.52142	-0.00021364	409.7219002652419	37.909	0.36113	37.73	37.483	37.844	-0.17929	0.027141	-0.00061169	NaN	71.296	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119580	+		65249	30288	45987	46053							0.013363523122393417
RAGVTTPAP	9	Unmodified	_RAGVTTPAP_					0	0	0		ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.78021240234375	2	435.245609	868.476666	0.1292	5.6235E-05	-0.15721	-6.8425E-05	-0.028006	-1.2189E-05	435.24552270957497	36.552	0.92889	36.552	36.229	37.158	0					57	24	3	0	0	0	0.020546	1	2918	2918		108.09	20.333	1	1590800			65250	6589	45988	46054	70441	70441					0.037166315832337204
RAGVTTPAP	9	Unmodified	_RAGVTTPAP_					0	0	0		ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	435.245609	868.476666	-0.52076	-0.00022666	0.44358	0.00019307	-0.077173	-3.3589E-05	435.2457981898748	36.385	1.0387	36.342	35.996	37.035	-0.042458					48	27	2	0	0	0	0.020546	1	2872	2872		96.19	27.706	1	1527300			65251	6589	45988	46054	70442	70442					0.037166315832337204
RAGVTTPAP	9	Unmodified	_RAGVTTPAP_					0	0	0		ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	ENSG00000157303|ENST00000375472|SUSD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7799987792969	2	435.245609	868.476666	-0.11217	-4.8822E-05	0.23321	0.0001015	0.12104	5.268E-05	435.24568885602315	36.521	1.0618	36.559	36.133	37.194	0.038044					69	28	4	0	0	0	0.020546	1	2851	2851		84.916	28.194	1	2094300			65252	6589	45988	46054	70443	70443					0.037166315832337204
RAGWELRVET	10	Unmodified	_RAGWELRVET_					0	0	0		ENST00000320743.7_2_12:59314033-59314237:-|nuORF	ENST00000320743.7_2_12:59314033-59314237:-|nuORF	ENST00000320743.7_2_12:59314033-59314237:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2187194824219	3	406.219283	1215.63602	-0.83224	-0.00033807	-2.3148	-0.00094033	-3.1471	-0.0012784	406.21820590291793	46.245	0.93177	46.043	45.669	46.6	-0.20226					74	25	5	0	0	0	1.0896	1	4458	4458		34.087	7.0392	1	2050000			65253	12197	45989	46055	70444	70444					0.036827201405458254
RAGWIGVL	8	Unmodified	_RAGWIGVL_					0	0	0		ENST00000418093.2_1_3:42980387-43074030:+|nuORF	ENST00000418093.2_1_3:42980387-43074030:+|nuORF	ENST00000418093.2_1_3:42980387-43074030:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.24798583984375	2	436.261062	870.507572	1.0489	0.00045758	4.0831	0.0017813	5.132	0.0022389	436.26332644970205	70.847	0.32159	70.847	70.744	71.065	0					10	7	2	0	0	0	0.027866	1	8591	8591		44.531	16.277	1	71647			65254	13930	45990	46056	70445	70445					0.06713829688146689
RAGYAYRR	8	Unmodified	_RAGYAYRR_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.82232666015625	2	506.7754	1011.53625	-0.1783	-9.0356E-05	-1.5076	-0.00076401	-1.6859	-0.00085436	506.77459526040553	42.721	0.83115	42.721	42.355	43.186	0					43	22	3	0	0	0	0.027866	1	3980	3980		26.796	10.323	1	1145000			65255	6601	45991	46057	70446	70446					0.030939473172679754
RAGYAYRR	8	Unmodified	_RAGYAYRR_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.82220458984375	2	506.7754	1011.53625	-0.094314	-4.7796E-05	-1.5558	-0.00078843	-1.6501	-0.00083623	506.77457178564	42.886	0.79208	42.747	42.345	43.137	-0.13929					45	21	3	0	0	0	0.027866	1	3993	3993		35.201	21.425	1	1311000			65256	6601	45991	46057	70447	70447					0.030939473172679754
RAGYAYRR	8	Unmodified	_RAGYAYRR_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8237609863281	2	506.7754	1011.53625	0.22983	0.00011647	-1.8957	-0.00096069	-1.6659	-0.00084422	506.77438394388406	42.774	1.1616	42.8	42.427	43.588	0.026012					55	31	3	0	0	0	0.027866	1	3950	3950		35.201	10.998	1	1143700			65257	6601	45991	46057	70448	70448					0.030939473172679754
RAHAVAGIKV	10	Unmodified	_RAHAVAGIKV_					0	0	0		chrX:152699074-152700622|121|49.6|0.01|11.72|+|0|None,MAGEA3|1;ENST00000393902.3_X:151937896-151938100:-|nuORF	chrX:152699074-152700622|121|49.6|0.01|11.72|+|0|None,MAGEA3|1	chrX:152699074-152700622|121|49.6|0.01|11.72|+|0|None,MAGEA3|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7896423339844	2	511.3169	1020.61925	-0.99397	-0.00050823	3.0685	0.001569	2.0746	0.0010608	511.3183567788527	85.587	0.20665	85.612	85.451	85.658	0.024849					7	4	2	0	0	0	0.03519	1	10660	10660		26.693	14.486	1	75558			65258	440	45992	46058	70449	70449					0.10976264045268636
RAHGRLGAP	9	Unmodified	_RAHGRLGAP_					0	0	0			REV__ENST00000570217.1_1_16:89972581-89984411:+|nuORF	REV__ENST00000570217.1_1_16:89972581-89984411:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.2277526855469	2	467.770117	933.525681	-0.27022	-0.0001264	3.2527	0.0015215	2.9824	0.0013951	467.77143430935956	49.283	0.71278	49.1	48.631	49.344	-0.18206					46	18	4	0	0	0	0.024506	1	4962	4962		23.042	4.7181	1	1082400	+		65259	35389	45993	46059	70450	70450					0.05625964662840488
RAHGRLGAP	9	Unmodified	_RAHGRLGAP_					0	0	0			REV__ENST00000570217.1_1_16:89972581-89984411:+|nuORF	REV__ENST00000570217.1_1_16:89972581-89984411:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.3056640625	2	467.770117	933.525681	-0.3425	-0.00016021	2.8544	0.0013352	2.5119	0.001175	467.7711089043203	53.341	0.4489	53.151	52.981	53.429	-0.18982					18	11	2	0	0	0	0.024436	1	5551	5551		38.806	6.8513	1	195430	+		65260	35389	45993	46059	70451	70451					0.05625964662840488
RAHMRRRL	8	Oxidation (M)	_RAHM(Oxidation (M))RRRL_		RAHM(1)RRRL		RAHM(52)RRRL	0	0	1		ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.3255004882812	2	556.322525	1110.6305	2.616	0.0014554	3.0227	0.0016816	5.6387	0.0031369	556.3241015454903	19.513	0.58402	19.579	19.291	19.875	0.066195					24	11	3	0	0	0	0.88442	1	384	384		52.299	6.3269	1	144410			65261	8950	45994	46060	70452	70452		375			0.0796076286776497
RAHMRRRL	8	Oxidation (M)	_RAHM(Oxidation (M))RRRL_					0	0	1		ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	556.322525	1110.6305	1.0208	0.00056789	4.4357	0.0024677	5.4565	0.0030355	556.3249478270546	19.341	0.48649	19.341	19.07	19.556	0	-0.10612	-0.00025923	NaN	52.299	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209070			65262	8950	45994	46060				375			0.0796076286776497
RAHMRRRL	8	Oxidation (M)	_RAHM(Oxidation (M))RRRL_					0	0	1		ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	556.322525	1110.6305	-0.41712	-0.00023205	5.9759	0.0033245	5.5588	0.0030925	556.3257463691319	19.541	0.53164	19.422	19.2	19.731	-0.11872	-0.025425	0.0014546	NaN	52.299	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174810			65263	8950	45994	46060				375			0.0796076286776497
RAHPAPRLAF	10	Unmodified	_RAHPAPRLAF_					0	0	0			REV__ENST00000585406.1_1_18:12911744-12911849:+|nuORF	REV__ENST00000585406.1_1_18:12911744-12911849:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2677001953125	2	568.327799	1134.64105	-0.047778	-2.7154E-05	-1.4353	-0.00081575	-1.4831	-0.0008429	568.3269509359657	24.243	0.37844	24.068	23.918	24.296	-0.17484					13	8	2	0	0	0	0.03519	1	1044	1044		26.693	0	1	80246	+		65264	35573	45995	46061	70453	70453					0.07911068793828235
RAHRLSSSL	9	Unmodified	_RAHRLSSSL_					0	0	0		ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7666015625	2	513.793789	1025.57303	-0.62101	-0.00031907	2.4255	0.0012462	1.8045	0.00092715	513.7950764478137	79.216	0.53957	79.044	78.736	79.275	-0.17226					15	12	2	0	0	0	0.023417	1	9820	9820		79.451	19.157	1	98721			65265	6625	45996	46062	70454	70454					0.06126199143204758
RAHRLSSSL	9	Unmodified	_RAHRLSSSL_					0	0	0		ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.793789	1025.57303	0.38928	0.00020001	1.4178	0.00072845	1.8071	0.00092846	513.7944319504547	79.253	0.45648	79.006	78.78	79.236	-0.2465	-0.012956	-0.00014502	NaN	79.451	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135150			65266	6625	45996	46062							0.06126199143204758
RAHRLSSSL	9	Unmodified	_RAHRLSSSL_					0	0	0		ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.793789	1025.57303	0.19663	0.00010103	1.6407	0.000843	1.8374	0.00094403	513.7947726549471	79.167	0.41156	78.948	78.791	79.202	-0.21923	-0.0718	8.4076E-05	NaN	79.451	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121100			65267	6625	45996	46062							0.06126199143204758
RAHSAAKRPI	10	Unmodified	_RAHSAAKRPI_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8302001953125	2	553.830706	1105.64686	0.11487	6.3616E-05	-1.4647	-0.00081117	-1.3498	-0.00074756	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	1.1333	1	11118	11118		28.081	0.19925	1	4870500			65268	10537	45997	46063	70455	70455					0.09826167305504896
RAHSKRVLSP	10	Unmodified	_RAHSKRVLSP_					0	0	0		ENST00000373034.8_1_X:99664142-99664250:-|nuORF	ENST00000373034.8_1_X:99664142-99664250:-|nuORF	ENST00000373034.8_1_X:99664142-99664250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8426513671875	2	575.843813	1149.67307	0.019504	1.1231E-05	-1.5007	-0.00086416	-1.4812	-0.00085293	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.1307	1	11314	11314		26.693	0	1	5880000			65269	13065	45998	46064	70456	70456					0.10422436476983421
RAHSRAHPI	9	Unmodified	_RAHSRAHPI_					0	0	0			REV__ENSG00000169957|ENST00000380412|ZNF768	REV__ENSG00000169957|ENST00000380412|ZNF768	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7648315429688	2	522.794124	1043.57369	-1.5621	-0.00081665	1.4535	0.0007599	-0.10855	-5.675E-05	523.2948261104681	35.983	0.75299	35.983	35.687	36.44	0					50	20	4	0	0	0	0.024261	1	2809	2809		64.207	30.692	1	588270	+		65270	26421	45999	46065	70457	70457					0.053650385828859726
RAHTAKSL	8	Unmodified	_RAHTAKSL_					0	0	0		ENST00000564629.1_1_16:31469550-31469661:-|nuORF	ENST00000564629.1_1_16:31469550-31469661:-|nuORF	ENST00000564629.1_1_16:31469550-31469661:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2354431152344	2	442.259051	882.503549	0.1695	7.4963E-05	-3.1473	-0.0013919	-2.9778	-0.001317	442.25752932810656	34.074	0.28146	34.07	33.908	34.19	-0.0045624					9	6	2	0	0	0	0.027866	1	2480	2480		68.485	21.718	1	114090			65271	16896	46000	46066	70458	70458					0.05759740194423557
RAIAIQQP	8	Unmodified	_RAIAIQQP_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2615966796875	2	448.769252	895.52395	-0.35657	-0.00016002	2.1714	0.00097446	1.8148	0.00081444	448.76914938232295	31.259	0.53465	31.074	30.865	31.4	-0.18503					38	13	4	0	0	0	0.027866	1	2077	2077		33.516	1.5607	1	330490	+		65272	29177	46001	46067	70459	70459					0.07200910854237463
RAIAPKVQ	8	Unmodified	_RAIAPKVQ_					0	0	0		ENSG00000186487|ENST00000647738|MYT1L;nc|ENSG00000186487|Q9UL68-4|MYT1L	ENSG00000186487|ENST00000647738|MYT1L	ENSG00000186487|ENST00000647738|MYT1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7567443847656	2	441.779619	881.544686	-0.20173	-8.9119E-05	0.55804	0.00024653	0.35631	0.00015741	441.7795228520996	21.37	0.48202	21.28	21.109	21.591	-0.090092					14	9	2	0	0	0	0.027866	1	623	623		15.642	7.9515	1	30686			65273	9555	46002	46068	70460	70460					0.09917501233894654
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.287353515625	2	541.287474	1080.5604	-0.80806	-0.00043739	0.1661	8.9909E-05	-0.64195	-0.00034748	541.2874875419466	68.783	1.178	68.783	68.369	69.547	0					79	30	4	0	0	0	0.03201	4	8269	8245;8257;8269;8280		139.97	37.197	1	6963100			65274	8257	46003	46069	70461;70462;70463;70464	70463					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.287353515625	2	541.287474	1080.5604	-0.27514	-0.00014893	-0.3094	-0.00016748	-0.58455	-0.00031641	541.2872127145378	69.104	1.0668	68.811	68.442	69.509	-0.29267					72	27	4	0	0	0	0.03201	4	8258	8258;8269;8281;8294		139.97	62.653	1	6281300			65275	8257	46003	46069	70465;70466;70467;70468	70465					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2872314453125	2	541.287474	1080.5604	-0.78322	-0.00042395	0.32663	0.0001768	-0.45659	-0.00024715	541.2875596922678	68.852	1.3859	68.867	68.569	69.955	0.015129					94	35	4	0	0	0	0.03201	4	8196	8173;8185;8196;8208		139.97	57.73	1	6026000			65276	8257	46003	46069	70469;70470;70471;70472	70471					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.287474	1080.5604	-1.1952	-0.00064692	-0.84324	-0.00045643	-2.0384	-0.0011034	541.2875845666518	69.004	0.91026	68.742	68.382	69.293	-0.26165	-0.026931	-0.0010043	NaN	139.97	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398760			65277	8257	46003	46069							0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.287474	1080.5604	0.0038494	2.0837E-06	-2.0009	-0.0010831	-1.9971	-0.001081	541.2870320071579	68.967	1.0175	68.724	68.348	69.366	-0.24277	-0.045224	-0.0022576	NaN	139.97	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463920			65278	8257	46003	46069							0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	ENSG00000172216|ENST00000303004|CEBPB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.287474	1080.5604	-0.8533	-0.00046188	-1.0254	-0.00055505	-1.8787	-0.0010169	541.287543664532	68.918	0.86037	68.687	68.357	69.217	-0.23048	-0.081877	-0.0012015	NaN	139.97	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451090			65279	8257	46003	46069							0.023337429602634074
RAIEHVLQV	9	Unmodified	_RAIEHVLQV_					0	0	0		ENST00000527167.5_1_22:42952032-42967202:+|nuORF;nc|ENSG00000293485|Q9NQF3|SERHL;ENST00000359906.6_1_22:42896676-42905109:+|nuORF;nc|ENSG00000183569|Q9H4I8-2|SERHL2;ENST00000534080.5_1_22:42950026-42967210:+|nuORF;ENSG00000183569|ENST00000327678|SERHL2	ENST00000527167.5_1_22:42952032-42967202:+|nuORF	ENST00000527167.5_1_22:42952032-42967202:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7904663085938	2	532.81419	1063.61383	-1.1768	-0.00062703	0.47057	0.00025073	-0.70625	-0.0003763	532.8144453924425	55.736	0.50327	55.834	55.598	56.102	0.098015					28	13	3	0	0	0	0.024017	1	6115	6115		65.465	10.689	1	363510			65280	9243	46004	46070	70473	70473					0.08456540462793782
RAIFLPQAW	9	Unmodified	_RAIFLPQAW_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3128662109375	2	551.313826	1100.6131	-0.2236	-0.00012327	-0.30011	-0.00016545	-0.52371	-0.00028873	551.3137266490951	72.799	0.55961	72.522	72.24	72.799	-0.2769					28	12	3	0	0	0	0.6504	1	8532	8532		49.442	12.282	1	614570			65281	9713	46005	46071	70474	70474					0.06681745813739326
RAIFLPQAW	9	Unmodified	_RAIFLPQAW_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3143920898438	2	551.313826	1100.6131	-0.029852	-1.6458E-05	-0.68603	-0.00037822	-0.71588	-0.00039468	551.3135202037797	72.824	0.55376	72.559	72.256	72.81	-0.26479					29	12	3	0	0	0	0.67687	1	8547	8547		47.657	3.2801	1	590110			65282	9713	46005	46071	70475	70475					0.06681745813739326
RAIFLPQAW	9	Unmodified	_RAIFLPQAW_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MSMS	OPSCC_40_ClassI_Rep-3	6	551.3154296875	2	551.313826	1100.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.583	1	72.384	71.884	72.884	-0.19811								0	0	0	0.47068	1	8503	8503		56.721	14.325	1				65283	9713	46005	46071	70476	70476					0.06681745813739326
RAIIAPRRI	9	Unmodified	_RAIIAPRRI_					0	0	0		nc|ENSG00000162959|Q9Y316-2|MEMO1	nc|ENSG00000162959|Q9Y316-2|MEMO1	nc|ENSG00000162959|Q9Y316-2|MEMO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.3008422851562	2	533.353817	1064.69308	-0.84242	-0.00044931	-2.4215	-0.0012915	-3.264	-0.0017408	533.8539833117076	60.968	0.14811	61.039	60.91	61.058	0.071125					5	3	2	0	0	0	0.024506	1	6940	6940		23.042	16.307	1	77654			65284	18439	46006	46072	70477	70477					0.16332232207605557
RAIQCGSLY	9	Unmodified	_RAIQCGSLY_					0	0	0			REV__ENST00000256447.5_2_5:66492527-66492614:-|nuORF	REV__ENST00000256447.5_2_5:66492527-66492614:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.758544921875	2	505.758027	1009.5015	-0.83152	-0.00042055	-0.63118	-0.00031922	-1.4627	-0.00073977	505.75735136753786	59.948	1.8035	60.027	58.733	60.536	0.078884					85	48	3	0	0	0	0.024457	1	6756	6756		21.96	12.254	1	342280	+		65285	29553	46007	46073	70478	70478					-0.0028705660570267355
RAIQVFIPK	9	Unmodified	_RAIQVFIPK_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3052368164062	2	536.337301	1070.66005	-0.90756	-0.00048676	-3.313	-0.0017769	-4.2206	-0.0022636	536.3355301217306	48.056	0.13626	48.056	48.003	48.14	0					5	3	2	0	0	0	0.024457	1	4873	4873		37.159	6.6555	1	272950	+		65286	21403	46008	46074	70479	70479					0.12754605364875715
RAIQVFIPK	9	Unmodified	_RAIQVFIPK_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3052978515625	2	536.337301	1070.66005	-0.96983	-0.00052016	1.4044	0.00075322	0.43454	0.00023306	536.3388203333052	47.95	0.47989	47.797	47.51	47.989	-0.15301					25	12	3	0	0	0	0.024323	1	4805	4805		63.306	26.147	1	1981700	+		65287	21403	46008	46074	70480	70480					0.12754605364875715
RAIRLLNK	8	Unmodified	_RAIRLLNK_					0	0	0		nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-3|ITIH5	nc|ENSG00000123243|Q86UX2-3|ITIH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2631530761719	2	492.327268	982.639983	0.9268	0.00045629	1.7761	0.00087444	2.7029	0.0013307	492.3280387409179	70.968	0.70178	70.675	70.368	71.07	-0.29292					32	16	3	0	0	0	0.027866	1	8605	8605		38.806	0	1	293760			65288	3966	46009	46075	70481	70481					0.1479685442494656
RAIRLVSV	8	Unmodified	_RAIRLVSV_					0	0	0			REV__nc|ENSG00000160223|O75144-3|ICOSLG	REV__nc|ENSG00000160223|O75144-3|ICOSLG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.3132019042969	2	457.300719	912.586885	-0.63343	-0.00028967	-0.33898	-0.00015502	-0.97241	-0.00044469	457.30052028353464	44.353	0.16712	44.353	44.215	44.382	0					7	4	2	0	0	0	0.027866	1	4231	4231		51.335	0	1	119250	+		65289	25298	46010	46076	70482	70482					0.1270947664228288
RAISLWPPLVL	11	Unmodified	_RAISLWPPLVL_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;ENST00000487651.5_1_7:100457471-100457768:+|nuORF;ENST00000448342.5_1_7:100456529-100458660:+|nuORF;ENST00000475623.1_1_7:100456676-100458183:+|nuORF	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	632.8634033203125	2	632.892441	1263.77033	0.72373	0.00045804	-1.102	-0.00069742	-0.37822	-0.00023937	632.8918371169156	105.92	0.26186	105.92	105.8	106.07	-0.0013199					12	8	2	0	0	0	0.024741	1	13570	13570		30.318	5.7985	1	103830			65290	5910	46011	46077	70483	70483					0.14899405633263996
RAISTKGVGP	10	Unmodified	_RAISTKGVGP_					0	0	0			REV__nc|ENSG00000196365|P36776-2|LONP1	REV__nc|ENSG00000196365|P36776-2|LONP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2699279785156	2	493.293091	984.571629	-0.11246	-5.5477E-05	-0.64582	-0.00031858	-0.75828	-0.00037406	493.2930628280486	25.213	0.42201	25.043	24.825	25.247	-0.17078					12	9	2	0	0	0	0.03519	1	1188	1188		32.812	0	1	46541	+		65291	28171	46012	46078	70484	70484					0.07872565054447023
RAIVSAPAR	9	Unmodified	_RAIVSAPAR_					0	0	0		ENST00000569248.5_1_16:730510-731029:+|nuORF	ENST00000569248.5_1_16:730510-731029:+|nuORF	ENST00000569248.5_1_16:730510-731029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2615661621094	2	470.787976	939.561398	0.73142	0.00034434	-0.6758	-0.00031816	0.055611	2.6181E-05	470.7873651129934	25.605	0.50433	25.685	25.418	25.922	0.08009					15	11	2	0	0	0	0.024539	1	1208	1208		35.618	13.916	1	57280			65292	17001	46013	46079	70485	70485					0.08920002119850778
RAIYSFIKL	9	Unmodified	_RAIYSFIKL_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.3396606445312	2	555.837134	1109.65972	0.3919	0.00021783	0.066568	3.7001E-05	0.45847	0.00025484	556.3390798342774	106.45	0.37006	106.29	106.09	106.46	-0.16132					30	17	2	0	0	0	0.6238	1	13233	13233		51.193	11.94	1	132790	+		65293	28522	46014	46080	70486	70486					0.10927185645027748
RAIYSFIKL	9	Unmodified	_RAIYSFIKL_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.837134	1109.65972	0.17381	9.661E-05	1.4487	0.00080527	1.6226	0.00090188	555.837056776551	106.52	0.30035	106.52	106.4	106.7	0.0018311	0.13023	0.00087426	NaN	51.193	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96756	+		65294	28522	46014	46080							0.10927185645027748
RAIYSFIKL	9	Unmodified	_RAIYSFIKL_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	555.837134	1109.65972	-0.060099	-3.3405E-05	0.5289	0.00029398	0.46881	0.00026058	555.8369335800946	106.39	0.67676	106.27	105.73	106.41	-0.1238	-0.1184	-0.00014831	NaN	51.193	43	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133600	+		65295	28522	46014	46080							0.10927185645027748
RAIYSFIKL	9	Unmodified	_RAIYSFIKL_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	555.837134	1109.65972	-1.0854	-0.00060333	1.1129	0.0006186	0.027471	1.527E-05	555.8376472923777	106.38	0.43476	106.24	106.02	106.46	-0.1328	-0.14508	0.00050093	NaN	51.193	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84148	+		65296	28522	46014	46080							0.10927185645027748
RAKALELE	8	Unmodified	_RAKALELE_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.25689697265625	2	465.274367	928.53418	0.94227	0.00043841	-0.23018	-0.0001071	0.71209	0.00033132	465.27420106894846	53.919	0.65015	54.017	53.808	54.458	0.098015					38	18	3	0	0	0	0.027866	1	5864	5864		35.201	0	1	346670			65297	10628	46015	46081	70487	70487					0.06705473788781546
RAKARAAAR	9	Unmodified	_RAKARAAAR_					0	0	0			REV__nc|ENSG00000133193|Q969W3|VCF1	REV__nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7873229980469	2	485.804491	969.59443	-0.83675	-0.0004065	-2.4049	-0.0011683	-3.2416	-0.0015748	485.8035905693497	44.775	0.34728	44.775	44.622	44.97	0					10	9	2	0	0	0	0.024405	1	4310	4310		14.865	3.9993	1	122550	+		65298	23360	46016	46082	70488	70488					0.10841628962543837
RAKEDYEK	8	Unmodified	_RAKEDYEK_					0	0	0			REV__nc|ENSG00000134744|Q5TAX3|TUT4	REV__nc|ENSG00000134744|Q5TAX3|TUT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8228149414062	2	519.764363	1037.51417	0.50874	0.00026442	-0.79668	-0.00041408	-0.28794	-0.00014966	519.7636619868503	82.122	1.0727	82.012	81.523	82.596	-0.11006					74	25	6	0	0	0	0.027866	1	10290	10290		64.207	0	1	1514800	+		65299	23473	46017	46083	70489	70489					-0.0030832194181584782
RAKEKLEK	8	Unmodified	_RAKEKLEK_					0	0	0			REV__ENST00000497283.1_1_3:50649969-50651260:+|nuORF	REV__ENST00000497283.1_1_3:50649969-50651260:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3085632324219	2	501.308741	1000.60293	-0.059795	-2.9976E-05	-0.32855	-0.00016471	-0.38835	-0.00019468	501.3084388248307	21.557	0.72547	21.366	21.128	21.853	-0.19072					37	14	4	0	0	0	0.5947	1	677	677		76.774	5.4784	1	547120	+		65300	33850	46018	46084	70490	70490					0.10265138088516323
RAKEKLEK	8	Unmodified	_RAKEKLEK_					0	0	0			REV__ENST00000497283.1_1_3:50649969-50651260:+|nuORF	REV__ENST00000497283.1_1_3:50649969-50651260:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3082275390625	2	501.308741	1000.60293	-1.5723	-0.00078819	1.0113	0.00050699	-0.56094	-0.0002812	501.30910148041846	21.549	0.72948	21.336	21.02	21.749	-0.2128					35	14	4	0	0	0	0.68164	1	659	659		68.787	5.4806	1	667860	+		65301	33850	46018	46084	70491	70491					0.10265138088516323
RAKGRVVNI	9	Unmodified	_RAKGRVVNI_					0	0	0		ENSG00000161267|ENST00000392379|BDH1;DLG1-BDH1|2|fusion;DLG1-BDH1|1|fusion	ENSG00000161267|ENST00000392379|BDH1	ENSG00000161267|ENST00000392379|BDH1	MSMS	OPSCC_39_ClassI_Rep-1	1	506.82373046875	2	506.82235	1011.63015	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.478	1	81.478	80.978	81.978	0								0	0	0	0.49654	1	10152	10152		53.351	0.41475	1				65302	6869	46019	46085	70492	70492					0.1247966641955145
RAKHAQAVPL	10	Unmodified	_RAKHAQAVPL_					0	0	0			REV__ENSG00000164488|ENST00000366795|DACT2	REV__ENSG00000164488|ENST00000366795|DACT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2958374023438	2	545.827632	1089.64071	0.02847	1.554E-05	-3.5178	-0.0019201	-3.4893	-0.0019046	545.8254988411004	57.409	0.7607	57.207	56.747	57.508	-0.20209					43	20	3	0	0	0	0.03519	1	6281	6281		29.15	0	1	415870	+		65303	25761	46020	46086	70493	70493					0.09947649073978937
RAKIPLSP	8	Unmodified	_RAKIPLSP_					0	0	0			REV__ENST00000570827.6_1_17:9548127-9548559:+|nuORF	REV__ENST00000570827.6_1_17:9548127-9548559:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2664489746094	2	441.281995	880.549437	-0.0083009	-3.663E-06	0.23155	0.00010218	0.22325	9.8515E-05	441.2820095938914	59.615	0.8976	59.701	59.351	60.249	0.085682					52	23	3	0	0	0	0.027866	1	6815	6815		65.803	5.5092	1	921290	+		65304	35396	46021	46087	70494	70494					0.10438385376664883
RAKKKKKI	8	Unmodified	_RAKKKKKI_					0	0	0			REV__ENSG00000147649|ENST00000336273|MTDH	REV__ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3132019042969	2	500.361111	998.707669	-0.24559	-0.00012288	3.6541	0.0018284	3.4085	0.0017055	500.36307688024925	76.297	0.39924	76.029	75.854	76.253	-0.26806					16	9	2	0	0	0	0.027866	1	9055	9055		20.482	8.275	1	126430	+		65305	24574	46022	46088	70495	70495					0.20826304355750835
RAKKPIKY	8	Unmodified	_RAKKPIKY_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.3241271972656	2	502.324194	1002.63383	1.0904	0.00054774	-1.2826	-0.00064426	-0.19215	-9.6523E-05	502.3233728476176	17.937	0.44537	17.783	17.607	18.052	-0.15407					22	8	4	0	0	0	0.68535	2	244	244;260		68.485	27.912	1	510250			65306	18271	46023	46089	70496;70497	70496					0.13262336193406554
RAKKPIKY	8	Unmodified	_RAKKPIKY_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.3240966796875	2	502.324194	1002.63383	-0.1543	-7.7507E-05	-0.017668	-8.875E-06	-0.17197	-8.6382E-05	502.3240339782001	17.995	0.54663	17.789	17.564	18.11	-0.20669					29	10	4	0	0	0	0.6248	1	238	238		73.975	23.95	1	509380			65307	18271	46023	46089	70498	70498					0.13262336193406554
RAKKPIKY	8	Unmodified	_RAKKPIKY_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.3241882324219	2	502.324194	1002.63383	3.5057	0.001761	-3.584	-0.0018003	-0.0783	-3.9332E-05	502.3222329228288	17.993	0.7464	17.751	17.528	18.274	-0.24256					35	14	4	0	0	0	0.97924	1	231	231		40.573	7.057	1	474290			65308	18271	46023	46089	70499	70499					0.13262336193406554
RAKLNLSPH	9	Unmodified	_RAKLNLSPH_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.3244018554688	2	518.306532	1034.59851	-0.39889	-0.00020675	-4.2505	-0.0022031	-4.6494	-0.0024098	518.8036334127252	41.304	0.83928	41.327	40.83	41.67	0.023006					25	23	2	0	0	0	0.024397	1	3652	3652		31.53	3.6476	1	121440			65309	6903	46024	46090	70500	70500					0.08259673665611444
RAKLQQTVE	9	Unmodified	_RAKLQQTVE_					0	0	0			REV__nc|ENSG00000036257|Q13618-2|CUL3;REV__ENST00000497715.1_1_2:225338964-225343150:-|nuORF	REV__ENST00000497715.1_1_2:225338964-225343150:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.8081665039062	2	536.809105	1071.60366	-1.0948	-0.0005877	-0.85197	-0.00045734	-1.9468	-0.001045	536.8094012478937	31.699	0.55116	31.546	31.232	31.783	-0.15231					42	13	5	0	0	0	0.29158	1	2124	2124		76.774	2.5191	1	1676000	+		65310	20065;33857	46025	46091	70501	70501					0.07071932737562747
RAKMEEKLI	9	Unmodified	_RAKMEEKLI_					0	0	0			REV__nc|ENSG00000173210|O94929-2|ABLIM3	REV__nc|ENSG00000173210|O94929-2|ABLIM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.3214721679688	2	559.323534	1116.63251	0.33047	0.00018484	-3.5961	-0.0020114	-3.2656	-0.0018265	559.3214200331422	72.278	1.0939	72.278	71.94	73.034	0					37	26	2	0	0	0	0.2508	1	8789	8789		82.241	2.5279	1	2038800	+		65311	26752	46026	46092	70502	70502					0.07886334042359522
RAKNAGVTI	9	Unmodified	_RAKNAGVTI_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.28057861328125	2	465.279983	928.545414	1.9761	0.00091944	-1.9775	-0.00092008	-0.0013731	-6.3887E-07	465.278980601381	24.53	0.65334	24.349	24.114	24.767	-0.18089					38	14	4	0	0	0	0.4752	1	1042	1042		60.972	2.19	1	1872200			65312	1210	46027	46093	70503	70503					0.07828295882939074
RAKPEYHKF	9	Unmodified	_RAKPEYHKF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.31982421875	2	588.31964	1174.62473	-0.090368	-5.3165E-05	-0.33702	-0.00019827	-0.42738	-0.00025144	588.3192930495853	21.41	0.81715	21.233	20.918	21.735	-0.17721					44	16	4	0	0	0	0.33603	1	673	673		70.816	24.359	1	418570			65313	3480	46028	46094	70504	70504					0.04439942837052513
RAKPEYHKF	9	Unmodified	_RAKPEYHKF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.3196411132812	2	588.31964	1174.62473	-0.86063	-0.00050632	0.48255	0.0002839	-0.37807	-0.00022243	588.3197816871028	21.678	0.67597	21.487	21.177	21.853	-0.19072					39	13	4	0	0	0	0.67687	1	703	703		47.657	14.907	1	308560			65314	3480	46028	46094	70505	70505					0.04439942837052513
RAKPEYHKF	9	Unmodified	_RAKPEYHKF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.3193969726562	2	588.31964	1174.62473	-1.757	-0.0010337	1.5149	0.00089122	-0.2421	-0.00014243	588.3203909187872	21.599	0.7264	21.386	21.118	21.845	-0.2128					41	14	4	0	0	0	0.48817	1	655	655		60.118	21.365	1	418220			65315	3480	46028	46094	70506	70506					0.04439942837052513
RAKPKKRC	8	Unmodified	_RAKPKKRC_					0	0	0			REV__ENSG00000175895|ENST00000315367|PLEKHF2	REV__ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.29827880859375	2	493.805645	985.596738	3.1176	0.0015395	1.3899	0.00068636	4.5076	0.0022259	493.8060084281997	19.052	0.24709	19.115	18.942	19.189	0.063307					6	4	2	0	0	0	0.027866	1	331	331		13.775	2.9098	1	36411	+		65316	26981	46029	46095	70507	70507					0.10336341376000746
RAKPKKRC	8	Unmodified	_RAKPKKRC_					0	0	0			REV__ENSG00000175895|ENST00000315367|PLEKHF2	REV__ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.805645	985.596738	1.8857	0.00093116	3.0775	0.0015197	4.9631	0.0024508	493.80684438978153	18.898	0.34641	18.898	18.674	19.021	0	-0.095266	0.00024915	NaN	13.775	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54533	+		65317	26981	46029	46095							0.10336341376000746
RAKPKKRC	8	Unmodified	_RAKPKKRC_					0	0	0			REV__ENSG00000175895|ENST00000315367|PLEKHF2	REV__ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.805645	985.596738	0.0072524	3.5813E-06	4.1545	0.0020515	4.1618	0.0020551	493.80739219714997	19.085	0.29704	18.966	18.804	19.101	-0.11872	-0.026872	0.0013129	NaN	13.775	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47140	+		65318	26981	46029	46095							0.10336341376000746
RAKQDPLN	8	Unmodified	_RAKQDPLN_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2927551269531	2	471.261791	940.509028	0.39731	0.00018724	4.2018	0.0019802	4.5991	0.0021674	471.2636031930659	49.831	0.73524	49.68	49.33	50.065	-0.1512					37	19	2	0	0	0	0.027866	1	5207	5207		63.306	6.5852	1	751570	+		65319	22489	46030	46096	70508	70508					0.036394189862335224
RAKREEEERK	10	Unmodified	_RAKREEEERK_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	ENSG00000146830|ENST00000678049|GIGYF1;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.29217529296875	3	444.24438	1329.71131	-0.11989	-5.3261E-05	3.31	0.0014704	3.1901	0.0014172	444.2458687922898	36.91	0.8446	36.949	36.648	37.493	0.038044					47	21	3	0	0	0	0.03519	1	2902	2902		31.634	1.0654	1	818880			65320	5911;10301	46031	46097	70509	70509					0.05964277600969581
RAKRKLSN	8	Unmodified	_RAKRKLSN_					0	0	0			REV__MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant	REV__MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7795715332031	2	486.8067	971.598846	-0.11704	-5.6976E-05	3.0026	0.0014617	2.8856	0.0014047	486.80806551220223	24.322	0.41979	24.147	23.963	24.383	-0.17484					15	9	2	0	0	0	0.027866	1	1074	1074		3.41	0	1	255760	+		65321	24063	46032	46098	70510	70510					0.11191093385468776
RAKRKLSN	8	Unmodified	_RAKRKLSN_					0	0	0			REV__MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant	REV__MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.8067	971.598846	2.2914	0.0011155	0.37664	0.00018335	2.668	0.0012988	486.80671447530665	24.399	0.38942	24.219	24.028	24.418	-0.18089	-0.022154	-0.001516	NaN	3.41	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292360	+		65322	24063	46032	46098							0.11191093385468776
RAKRKVNY	8	Unmodified	_RAKRKVNY_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2939453125	2	517.814525	1033.6145	-0.59739	-0.00030934	3.1793	0.0016463	2.5819	0.0013369	517.8159522867979	69.867	0.91466	69.6	69.206	70.121	-0.26725					54	21	3	0	0	0	0.027866	1	8136	8136		19.36	3.7182	1	1164700			65323	857	46033	46099	70511	70511					0.09903379902516463
RAKRKVNY	8	Unmodified	_RAKRKVNY_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.814525	1033.6145	0.46316	0.00023983	0.91876	0.00047575	1.3819	0.00071558	517.8148490780309	69.659	0.23956	69.366	69.312	69.551	-0.29291	-0.16634	-0.0016306	NaN	19.36	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50543			65324	857	46033	46099							0.09903379902516463
RAKRKVNY	8	Unmodified	_RAKRKVNY_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.814525	1033.6145	-0.84082	-0.00043539	-0.22379	-0.00011588	-1.0646	-0.00055127	517.8140732340473	69.527	0.28226	69.542	69.388	69.67	0.015129	0.0099241	-0.0028139	NaN	19.36	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43418			65325	857	46033	46099							0.09903379902516463
RAKRKVNY	8	Unmodified	_RAKRKVNY_					0	0	0		ENSG00000009413|ENST00000368802|REV3L;nc|ENSG00000009413|O60673-2|REV3L	ENSG00000009413|ENST00000368802|REV3L	ENSG00000009413|ENST00000368802|REV3L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.814525	1033.6145	0.078955	4.0884E-05	2.372	0.0012282	2.4509	0.0012691	517.8156011718398	69.792	1.1037	69.569	69.062	70.165	-0.22245	0.037423	-0.00012562	NaN	19.36	68	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1507700			65326	857	46033	46099							0.09903379902516463
RAKRLVLTH	9	Unmodified	_RAKRLVLTH_					0	0	0		ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3275146484375	2	547.351274	1092.688	-0.34171	-0.00018704	1.811	0.00099128	1.4693	0.00080424	547.3527165814425	40.962	0.17753	40.962	40.908	41.085	0					7	4	2	0	0	0	0.024539	1	3655	3655		20.947	0.95016	1	197170			65327	5512	46034	46100	70512	70512					0.14535928344957938
RAKRPKHYR	9	Unmodified	_RAKRPKHYR_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.214599609375	3	404.579257	1210.71594	0.043917	1.7768E-05	-0.98633	-0.00039905	-0.94242	-0.00038128	404.5787782405426	28.566	0.33222	28.562	28.374	28.706	-0.0042019					10	7	2	0	0	0	0.0245	1	1660	1660		16.717	6.1306	1	36252	+		65328	27888	46035	46101	70513	70513					0.11901251325070916
RAKRTKPN	8	Unmodified	_RAKRTKPN_					0	0	0		nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	nc|ENSG00000157168|Q02297-11|NRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2922668457031	2	485.798875	969.583196	-1.0509	-0.0005105	3.8445	0.0018676	2.7936	0.0013571	485.80070507867106	81.348	0.61124	81.372	81.126	81.737	0.023903					19	14	2	0	0	0	0.027866	1	10098	10098		23.042	0	1	129860			65329	6580	46036	46102	70514	70514					0.09718806868420415
RAKRVHLQP	9	Unmodified	_RAKRVHLQP_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8109741210938	2	552.841074	1103.66759	-1.1389	-0.00062962	-0.5539	-0.00030622	-1.6928	-0.00093584	552.8407832528425	51.341	0.1386	51.428	51.339	51.478	0.087006					5	3	2	0	0	0	0.024506	1	5369	5369		23.042	1.0826	1	51767	+		65330	19300	46037	46103	70515	70515					0.11990757685180142
RAKSKPVAF	9	Unmodified	_RAKSKPVAF_					0	0	0		nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4;nc|ENSG00000283228|O00305-4|CACNB4	nc|ENSG00000283228|O00305-2|CACNB4	nc|ENSG00000283228|O00305-2|CACNB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.323486328125	2	502.306001	1002.59745	-0.15322	-7.6963E-05	-0.60422	-0.0003035	-0.75744	-0.00038047	502.3057050947232	73.471	0.47481	73.194	72.968	73.443	-0.2769					18	11	2	0	0	0	0.024523	1	8663	8663		15.642	0	1	410950			65331	9134	46038	46104	70516	70516					0.09625459296705685
RAKSTPSGF	9	Unmodified	_RAKSTPSGF_					0	0	0		ENSG00000166165|ENST00000348956|CKB;ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.7561950683594	2	475.756341	949.498129	1.381	0.000657	-1.6577	-0.00078865	-0.27671	-0.00013165	475.7553921017014	23.113	0.45669	22.922	22.711	23.167	-0.19117					20	9	3	0	0	0	0.34489	1	852	852		69.628	20.186	1	417180			65332	7514	46039	46105	70517	70517					0.021360166119507085
RAKTCLLIQ	9	Unmodified	_RAKTCLLIQ_					0	0	0			REV__ENST00000540721.5_1_16:90089090-90108732:+|nuORF	REV__ENST00000540721.5_1_16:90089090-90108732:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7894287109375	2	523.312969	1044.61138	-0.69309	-0.0003627	-4.0717	-0.0021308	-4.7648	-0.0024935	523.3108327308117	60.868	0.96766	60.614	60.294	61.262	-0.25374					83	23	6	0	0	0	0.023817	1	6775	6775		71.296	5.4925	1	3129300	+		65333	24058	46040	46106	70518	70518					0.09086368733505878
RAKVENEQKV	10	Unmodified	_RAKVENEQKV_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.8948059082031	3	400.894688	1199.66223	1.1235	0.00045042	-1.2621	-0.00050596	-0.13854	-5.554E-05	400.8942010306212	26.454	0.61718	26.454	26.124	26.741	0					47	14	4	0	0	0	1.0545	1	1362	1362		38.754	1.1537	1	3021700			65334	10044	46041	46107	70519	70519					0.07038989312013655
RAKVENEQKV	10	Unmodified	_RAKVENEQKV_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.8948669433594	3	400.894688	1199.66223	0.13183	5.2849E-05	-0.20951	-8.3991E-05	-0.077681	-3.1142E-05	400.8945992729402	26.463	0.61272	26.44	26.164	26.776	-0.023088					44	14	4	0	0	0	0.93809	1	1341	1341		51.528	2.9262	1	3091900			65335	10044	46041	46107	70520	70520					0.07038989312013655
RAKVENEQKV	10	Unmodified	_RAKVENEQKV_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.8948974609375	3	400.894688	1199.66223	2.4567	0.00098489	-2.4006	-0.00096239	0.056109	2.2494E-05	400.89370501597745	26.311	0.66363	26.392	26.051	26.714	0.081293					49	15	4	0	0	0	0.93809	1	1298	1298		51.528	2.0619	1	2978300			65336	10044	46041	46107	70521	70521					0.07038989312013655
RAKVKTDDI	9	Unmodified	_RAKVKTDDI_					0	0	0		nc|ENSG00000171262|Q52LJ0-1|FAM98B;ENSG00000171262|ENST00000397609|FAM98B	nc|ENSG00000171262|Q52LJ0-1|FAM98B	nc|ENSG00000171262|Q52LJ0-1|FAM98B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3034057617188	2	523.303655	1044.59276	-0.3005	-0.00015725	0.32198	0.00016849	0.021478	1.124E-05	523.3036719773831	99.834	1.216	99.834	99.358	100.57	0					55	29	3	0	0	0	0.96906	1	12779	12779		26.693	1.1189	1	1346600			65337	18514	46042	46108	70522	70522					0.07224530363282611
RAKWGAIW	8	Unmodified	_RAKWGAIW_					0	0	0		ENST00000392842.5_1_12:107155714-107155822:+|nuORF	ENST00000392842.5_1_12:107155714-107155822:+|nuORF	ENST00000392842.5_1_12:107155714-107155822:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2786560058594	2	494.279786	986.54502	0.19891	9.8318E-05	-1.6366	-0.00080893	-1.4377	-0.00071061	494.2788659981872	89.604	0.80934	89.467	89.068	89.877	-0.13761					40	18	3	0	0	0	0.95417	1	10942	10942		44.531	3.9584	1	419870			65338	13429	46043	46109	70523	70523					0.0512092095374328
RAKYERREF	9	Unmodified	_RAKYERREF_					0	0	0		nc|ENSG00000184060|Q9NPF8-2|ADAP2;ENSG00000184060|ENST00000330889|ADAP2	nc|ENSG00000184060|Q9NPF8-2|ADAP2	nc|ENSG00000184060|Q9NPF8-2|ADAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.25115966796875	3	418.894911	1253.6629	-0.69915	-0.00029287	1.0758	0.00045065	0.37665	0.00015778	418.8945208645159	26.155	0.13456	25.919	25.843	25.977	-0.23603					5	3	2	0	0	0	0.024541	1	1308	1308		12.812	2.7078	1	42474			65339	9303	46044	46110	70524	70524					0.046218287517376666
RALAIQNW	8	Unmodified	_RALAIQNW_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2887268066406	2	486.274701	970.534849	-1.3083	-0.00063619	1.3548	0.0006588	0.046487	2.2606E-05	486.2752824629139	65.229	0.32724	65.026	64.859	65.186	-0.20254					10	7	2	0	0	0	0.027866	1	7454	7454		33.516	9.3128	1	43550			65340	9617	46045	46111	70525	70525					0.0484031322851024
RALAKQNL	8	Unmodified	_RALAKQNL_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	457.282526	912.550499	-0.15959	-7.2977E-05	0.35299	0.00016142	0.1934	8.844E-05	457.2826065772946	24.63	0.35641	24.63	24.429	24.786	0					15	7	3	0	0	0	0.027866	1	1089	1089		31.955	5.1588	1	118740	+		65341	23578	46046	46112	70526	70526					0.09072599745559273
RALAKQNL	8	Unmodified	_RALAKQNL_					0	0	0			REV__nc|ENSG00000135773|O14815-2|CAPN9	REV__nc|ENSG00000135773|O14815-2|CAPN9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.282526	912.550499	0.53673	0.00024544	0.11113	5.082E-05	0.64786	0.00029626	457.2825077107283	24.668	0.59019	24.746	24.501	25.091	0.078344	0.057791	-0.00012265	NaN	38.806	18	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79560	+		65342	23578	46046	46112							0.09072599745559273
RALASAGPGGA	11	Unmodified	_RALASAGPGGA_					0	0	0			REV__ENSG00000251493|ENST00000615637|FOXD1	REV__ENSG00000251493|ENST00000615637|FOXD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.2535705566406	2	464.253966	926.493378	0.32832	0.00015242	-0.73295	-0.00034028	-0.40463	-0.00018785	464.25350960111643	78.41	1.5236	78.179	77.834	79.357	-0.23141					99	35	4	0	0	0	1.0075	1	9353	9353		35.152	4.8343	1	2225500	+		65343	29033	46047	46113	70527	70527					0.027191324691898444
RALDAFIVE	9	Unmodified	_RALDAFIVE_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8091430664062	2	517.287474	1032.5604	-0.26698	-0.00013811	3.3972	0.0017573	3.1302	0.0016192	517.2892116038965	37.753	1.2759	37.574	36.826	38.102	-0.17929					61	34	2	0	0	0	0.02435	1	3085	3085		51.335	10.763	1	312610	+		65344	28747	46048	46114	70528	70528					0.04541742960282136
RALELEARRW	10	Unmodified	_RALELEARRW_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.9141845703125	3	433.914194	1298.72075	-0.26381	-0.00011447	-0.021568	-9.3587E-06	-0.28538	-0.00012383	433.9142004927514	41.908	1.4548	41.676	41.351	42.806	-0.23186					100	38	4	0	0	0	0.65849	1	3744	3744		70.399	18.231	1	7828100			65345	9416	46049	46115	70529	70529					0.08334090677180939
RALELEARRW	10	Unmodified	_RALELEARRW_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.9141845703125	3	433.914194	1298.72075	0.29599	0.00012844	-0.63087	-0.00027374	-0.33488	-0.00014531	433.9139612299264	41.98	1.4746	41.75	41.394	42.869	-0.2303					102	39	4	0	0	0	0.78327	2	3735	3723;3735		61.765	13.805	1	8046800			65346	9416	46049	46115	70530;70531	70531					0.08334090677180939
RALFFKVI	8	Unmodified	_RALFFKVI_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2953796386719	2	497.315838	992.617122	0.42954	0.00021362	1.419	0.00070571	1.8486	0.00091933	497.31705282040997	40.981	0.14293	40.981	40.908	41.051	0					8	3	3	0	0	0	0.027866	1	3661	3661		26.796	5.0938	1	106630			65347	2480;18139	46050	46116	70532	70532					0.12051835307465808
RALFIALGQP	10	Unmodified	_RALFIALGQP_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3092651367188	2	543.326934	1084.63931	0.056938	3.0936E-05	-0.27298	-0.00014832	-0.21604	-0.00011738	543.326705133341	69.005	0.57553	68.763	68.548	69.123	-0.24278					28	13	3	0	0	0	0.03519	1	7991	7991		31.53	3.4483	1	446740			65348	1519	46051	46117	70533	70533					0.10038014985207155
RALFLLLLI	9	Unmodified	_RALFLLLLI_					0	0	0		nc|ENSG00000144152|Q53RD9-4|FBLN7;nc|ENSG00000144152|Q53RD9-2|FBLN7;ENSG00000144152|ENST00000331203|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3423461914062	2	536.36807	1070.72159	-0.75985	-0.00040756	2.3636	0.0012678	1.6037	0.00086019	536.8708636917952	27.132	0.22179	27.132	26.993	27.215	0					7	5	2	0	0	0	0.024443	1	1445	1445		26.796	3.7536	1	65207			65349	5719	46052	46118	70534	70534					0.18905537064210876
RALGIGFQW	9	Unmodified	_RALGIGFQW_					0	0	0		nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2843017578125	2	524.290351	1046.56615	-0.015558	-8.1568E-06	1.1209	0.00058767	1.1053	0.00057951	524.2911681668259	71.843	2.0829	71.567	71.011	73.094	-0.27509					101	49	4	0	0	0	0.23085	6	8379	8379;8390;8402;8414;8426;8441		84.916	28.859	1	32051000			65350	18502	46053	46119	70535;70536;70537;70538;70539;70540	70535					0.04472886262601605
RALGIGFQW	9	Unmodified	_RALGIGFQW_					0	0	0		nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2896728515625	2	524.290351	1046.56615	0.25589	0.00013416	0.84041	0.00044062	1.0963	0.00057478	524.2910198038102	71.832	1.3537	71.57	70.992	72.345	-0.262					90	32	4	0	0	0	0.12602	7	8399	8399;8411;8423;8436;8449;8462;8475		104.75	49.242	1	28665000			65351	18502	46053	46119	70541;70542;70543;70544;70545;70546;70547	70541					0.04472886262601605
RALGIGFQW	9	Unmodified	_RALGIGFQW_					0	0	0		nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	nc|ENSG00000169604|Q9H6X2-6|ANTXR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2905883789062	2	524.290351	1046.56615	0.38616	0.00020246	0.58941	0.00030902	0.97557	0.00051148	524.2909534569192	71.66	2.0698	71.454	70.921	72.991	-0.20613					146	49	6	0	0	0	0.16468	7	8379	8356;8367;8379;8391;8411;8424;8443		96.19	30.905	1	30612000			65352	18502	46053	46119	70548;70549;70550;70551;70552;70553;70554	70550					0.04472886262601605
RALGRRAPL	9	Unmodified	_RALGRRAPL_					0	0	0			REV__ENST00000597578.1_1_16:86524111-86542471:-|nuORF	REV__ENST00000597578.1_1_16:86524111-86542471:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3239440917969	2	505.322517	1008.63048	-0.021531	-1.088E-05	1.6109	0.00081404	1.5894	0.00080316	505.32367507392587	79.153	5.1565	79.172	78.693	83.85	0.018677					323	123	5	0	0	0	0.64155	1	9700	9700		50.025	0	1	98007000	+		65353	35807	46054	46120	70555	70555					0.12651086139408108
RALIEMVV	8	Unmodified	_RALIEMVV_					0	0	0		ENSG00000126246|ENST00000246532|IGFLR1;nc|ENSG00000126246|Q9H665-2|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7548828125	2	465.775688	929.536823	-0.62681	-0.00029195	3.9106	0.0018215	3.2838	0.0015295	465.7773115480456	23.723	0.51682	23.663	23.47	23.987	-0.060862					22	11	3	0	0	0	0.027866	1	956	956		33.516	13.034	1	236440			65354	4188	46055	46121	70556	70556					0.06923605922122533
RALKEITTF	9	Unmodified	_RALKEITTF_					0	0	0		ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.8159790039062	2	539.816399	1077.61824	-1.1591	-0.0006257	-0.15711	-8.4813E-05	-1.3162	-0.00071051	539.8163211691259	43.779	0.87459	43.535	43.241	44.115	-0.24372					50	23	3	0	0	0	0.32811	2	4027	4027;4039		71.877	15.156	1	2517500			65355	2780	46056	46122	70557;70558	70557					0.08254004885679933
RALKEITTF	9	Unmodified	_RALKEITTF_					0	0	0		ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8167724609375	2	539.816399	1077.61824	-1.8197	-0.00098232	0.39796	0.00021483	-1.4218	-0.00076749	539.8164711782209	43.797	0.79575	43.578	43.176	43.972	-0.21939					49	21	4	0	0	0	0.15366	1	4038	4038		98.629	27.334	1	2267700			65356	2780	46056	46122	70559	70559					0.08254004885679933
RALKELFH	8	Unmodified	_RALKELFH_					0	0	0		nc|ENSG00000085511|Q9Y6R4-2|MAP3K4;ENSG00000085511|ENST00000392142|MAP3K4	nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2933654785156	2	507.298176	1012.5818	0.17411	8.8327E-05	-4.2299	-0.0021458	-4.0558	-0.0020575	507.2959247911687	18.209	0.54043	18.077	17.712	18.253	-0.13148					29	10	4	0	0	0	0.81662	1	231	231		57.811	2.3071	1	262090			65357	1793	46057	46123	70560	70560					0.07601172779652643
RALKKVRI	8	Unmodified	_RALKKVRI_					0	0	0		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.3454895019531	2	492.345461	982.676368	0.95737	0.00047135	-0.9698	-0.00047747	-0.01243	-6.1197E-06	492.34483581635675	19.681	0.59424	19.481	19.255	19.85	-0.2001					27	11	4	0	0	0	1.0574	1	442	442		19.36	1.0356	1	427320			65358	18248	46058	46124	70561	70561					0.18433731321647429
RALKLISVF	9	Unmodified	_RALKLISVF_					0	0	0		ENST00000465997.1_1_20:44463683-44469293:+|nuORF	ENST00000465997.1_1_20:44463683-44469293:+|nuORF	ENST00000465997.1_1_20:44463683-44469293:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.272705078125	2	523.839677	1045.6648	0.38294	0.0002006	-0.93357	-0.00048904	-0.55062	-0.00028844	523.8390227510956	62.514	1.5193	62.576	62.401	63.921	0.062767					58	39	2	0	0	0	0.024477	1	7201	7201		20.947	4.4738	1	239170			65359	14802	46059	46125	70562	70562					0.14379489507678045
RALKPLLR	8	Unmodified	_RALKPLLR_					0	0	0			REV__ENSG00000124212|ENST00000244043|PTGIS	REV__ENSG00000124212|ENST00000244043|PTGIS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.86785888671875	2	483.832186	965.649819	0.21735	0.00010516	-0.13347	-6.4578E-05	0.083874	4.0581E-05	483.8319290553218	37.522	0.50559	37.329	37.002	37.508	-0.193					26	12	3	0	0	0	0.027866	1	3043	3043		23.042	10.836	1	263450	+		65360	22748	46060	46126	70563	70563					0.1656204243032562
RALKPLLR	8	Unmodified	_RALKPLLR_					0	0	0			REV__ENSG00000124212|ENST00000244043|PTGIS	REV__ENSG00000124212|ENST00000244043|PTGIS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.832186	965.649819	-1.0688	-0.00051712	2.0008	0.00096804	0.93199	0.00045093	483.8326270028689	37.521	0.65363	37.302	36.962	37.615	-0.2195	-0.023291	0.0014519	NaN	10.866	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276430	+		65361	22748	46060	46126							0.1656204243032562
RALKPLLR	8	Unmodified	_RALKPLLR_					0	0	0			REV__ENSG00000124212|ENST00000244043|PTGIS	REV__ENSG00000124212|ENST00000244043|PTGIS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.832186	965.649819	-0.52155	-0.00025234	0.44464	0.00021513	-0.076903	-3.7208E-05	483.83229620821027	37.554	0.69333	37.344	36.923	37.616	-0.2092	0.019564	-5.3916E-05	NaN	10.866	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315430	+		65362	22748	46060	46126							0.1656204243032562
RALKVNLDL	9	Unmodified	_RALKVNLDL_					0	0	0		ENST00000526955.1_1_11:125281302-125301285:+|nuORF	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	521.3251342773438	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.901	1	49.75	49.25	50.25	-0.1512								0	0	0	0.3606	1	5158	5158		64.207	0.67341	1				65363	16135	46061	46127	70564	70564					0.11553711122610366
RALKVSLFI	9	Unmodified	_RALKVSLFI_					0	0	0			REV__ENSG00000088053|ENST00000310373|GP6	REV__ENSG00000088053|ENST00000310373|GP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.8365478515625	2	523.839677	1045.6648	-0.53011	-0.00027769	-0.2004	-0.00010498	-0.73052	-0.00038267	523.8395320407461	61.144	1.6442	60.93	60.384	62.028	-0.21339					112	43	5	0	0	0	0.17822	1	7002	7002		93.195	2.4188	1	13640000	+		65364	20807	46062	46128	70565	70565					0.14379489507655308
RALLADLLL	9	Unmodified	_RALLADLLL_					0	0	0			REV__ENST00000568503.1_1_16:67208072-67208471:+|nuORF	REV__ENST00000568503.1_1_16:67208072-67208471:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.32366943359375	2	499.32386	996.633166	0.38604	0.00019276	-0.27224	-0.00013593	0.11381	5.6827E-05	499.32367611671106	75.985	1.0941	75.997	75.681	76.775	0.011635					62	27	3	0	0	0	0.39228	1	9277	9277		66.429	0	1	6312300	+		65365	24048	46063	46129	70566	70566					0.13471496753720658
RALLGYAV	8	Unmodified	_RALLGYAV_					0	0	0			REV__ENST00000585420.5_1_19:13002616-13007066:+|nuORF	REV__ENST00000585420.5_1_19:13002616-13007066:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.8885498046875	2	431.760895	861.507237	-0.035545	-1.5347E-05	1.1792	0.00050914	1.1437	0.00049379	431.76077625273456	22.054	0.53116	21.852	21.614	22.146	-0.20198					17	10	3	0	0	0	0.027866	1	709	709		26.796	7.4361	1	28672	+		65366	35574	46064	46130	70567	70567					0.07094409968271975
RALLLYLD	8	Unmodified	_RALLLYLD_					0	0	0		nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2;ENST00000466324.1_1_11:64444212-64481216:-|nuORF	nc|ENSG00000110076|Q9P2S2-2|NRXN2	nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2300109863281	2	488.794935	975.575317	-0.38661	-0.00018897	3.666	0.0017919	3.2794	0.001603	488.79658060750916	31.649	0.38041	31.408	31.185	31.565	-0.24109					15	9	2	0	0	0	0.027866	1	2112	2112		50.025	0.58299	1	78460			65367	3021	46065	46131	70568	70568					0.08655234828268021
RALLPARPQ	9	Unmodified	_RALLPARPQ_					0	0	0			REV__ENST00000524325.5_2_8:143293473-143310920:-|nuORF	REV__ENST00000524325.5_2_8:143293473-143310920:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.803466796875	2	511.3169	1020.61925	-0.43774	-0.00022382	0.72728	0.00037187	0.28954	0.00014805	511.3174094874475	52.352	0.27755	52.352	52.236	52.513	0					9	6	2	0	0	0	0.024405	1	5607	5607		27.882	0	1	54220	+		65368	34382	46066	46132	70569	70569					0.10976264045268636
RALLPARPQ	9	Unmodified	_RALLPARPQ_					0	0	0			REV__ENST00000524325.5_2_8:143293473-143310920:-|nuORF	REV__ENST00000524325.5_2_8:143293473-143310920:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.3169	1020.61925	-0.5511	-0.00028179	-3.5717	-0.0018263	-4.1228	-0.0021081	511.3148778893835	52.482	0.55161	52.363	52.048	52.599	-0.11875	-0.0031374	-0.00026888	NaN	27.882	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191010	+		65369	34382	46066	46132							0.10976264045268636
RALLPARPQ	9	Unmodified	_RALLPARPQ_					0	0	0			REV__ENST00000524325.5_2_8:143293473-143310920:-|nuORF	REV__ENST00000524325.5_2_8:143293473-143310920:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.3169	1020.61925	-0.19211	-9.8227E-05	-3.9201	-0.0020044	-4.1122	-0.0021026	511.3148464584972	52.573	0.52405	52.383	52.067	52.591	-0.18982	0.016994	-0.00062513	NaN	27.882	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146600	+		65370	34382	46066	46132							0.10976264045268636
RALLPNINI	9	Unmodified	_RALLPNINI_					0	0	0		nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.80316162109375	2	512.319109	1022.62366	-0.087514	-4.4835E-05	-0.16094	-8.2453E-05	-0.24845	-0.00012729	512.3189121871486	51.592	1.1085	51.592	51.323	52.431	0					55	30	3	0	0	0	0.024457	1	5618	5618		37.159	2.9866	1	1365000			65371	1694	46067	46133	70570	70570					0.11325728468159468
RALLPNINI	9	Unmodified	_RALLPNINI_					0	0	0		nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.319109	1022.62366	-0.686	-0.00035145	0.48476	0.00024835	-0.20124	-0.0001031	512.3192185372006	51.769	0.57868	51.622	51.371	51.95	-0.14735	0.11466	0.00045515	NaN	44.117	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1297000			65372	1694	46067	46133							0.11325728468159468
RALLPNINI	9	Unmodified	_RALLPNINI_					0	0	0		nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.319109	1022.62366	-1.2806	-0.00065605	1.125	0.00057638	-0.15552	-7.9675E-05	512.3194685689368	51.49	0.81231	51.577	51.302	52.114	0.087009	0.06993	0.0011112	NaN	44.117	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1231000			65373	1694	46067	46133							0.11325728468159468
RALLQNNTL	9	Unmodified	_RALLQNNTL_					0	0	0		nc|ENSG00000163431|P29536-2|LMOD1;ENSG00000163431|ENST00000367288|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3247680664062	2	521.803823	1041.59309	-0.09387	-4.8982E-05	2.0911	0.0010912	1.9973	0.0010422	521.8047422344401	49.415	0.8323	49.415	48.899	49.731	0					29	14	3	0	0	0	0.02435	1	5108	5108		42.396	22.399	1	822210			65374	7077	46068	46134	70571	70571					0.073959500831279
RALLQPEPC	9	Unmodified	_RALLQPEPC_					0	0	0			REV__ENST00000370526.3_1_X:140270209-140270476:-|nuORF	REV__ENST00000370526.3_1_X:140270209-140270476:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7742309570312	2	513.773677	1025.5328	-0.53507	-0.0002749	-2.8365	-0.0014573	-3.3716	-0.0017322	513.7720488164222	45.478	0.71288	45.267	45.022	45.735	-0.21109					45	20	3	0	0	0	0.024292	1	4344	4344		49.442	16.629	1	2235800	+		65375	31130	46069	46135	70572	70572					0.02105516428377996
RALLRGTA	8	Unmodified	_RALLRGTA_					0	0	0		ENSG00000173327|ENST00000309100|MAP3K11;nc|ENSG00000173327|Q16584-2|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.2661437988281	2	429.269419	856.524284	0.68362	0.00029346	-1.43	-0.00061388	-0.74643	-0.00032042	429.2687499775249	21.146	0.49107	20.955	20.637	21.128	-0.19072					15	9	2	0	0	0	0.027866	1	592	592		12.207	4.5166	1	33743			65376	8366	46070	46136	70573	70573					0.09028330574074062
RALLRLAR	8	Unmodified	_RALLRLAR_					0	0	0			REV__USP14-THOC1|2|fusion;REV__ENSG00000091483|ENST00000366560|FH	REV__USP14-THOC1|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7869873046875	2	484.827435	967.640317	-1.0614	-0.0005146	2.8327	0.0013733	1.7712	0.00085875	484.82892471496143	44.854	0.44995	44.705	44.488	44.938	-0.1488					29	12	3	0	0	0	0.027866	1	4316	4316		24.203	0	1	422070	+		65377	20627;20909	46071	46137	70574	70574					0.15520274144773794
RALLRLLLP	9	Unmodified	_RALLRLLLP_					0	0	0		ENST00000490508.5_1_2:85582731-85618082:+|nuORF;ENST00000429764.5_1_2:85582731-85584092:+|nuORF;ENST00000409344.7_1_2:85582731-85583748:+|nuORF	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	ENST00000490508.5_1_2:85582731-85618082:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8085327148438	2	532.868769	1063.72298	-0.11077	-5.9025E-05	2.1933	0.0011687	2.0825	0.0011097	532.8690516460738	45.784	0.1088	45.687	45.632	45.741	-0.096649					4	2	2	0	0	0	0.024541	1	4378	4378		17.365	0	1	173090			65378	15433	46072	46138	70575	70575					0.19367171152930496
RALLSPPPL	9	Unmodified	_RALLSPPPL_					0	0	0			REV__ENST00000500093.2_1_5:55291177-55291309:+|nuORF	REV__ENST00000500093.2_1_5:55291177-55291309:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2757568359375	2	482.302927	962.591301	1.0168	0.00049042	-0.91342	-0.00044054	0.10341	4.9874E-05	482.3023850207759	64.184	0.8821	64.184	63.772	64.654	0					54	23	3	0	0	0	0.024294	1	7599	7599		55.504	10.973	1	987740	+		65379	33902	46073	46139	70576	70576					0.10850941065177722
RALLVWLN	8	Unmodified	_RALLVWLN_					0	0	0			REV__ENSG00000236543|ENST00000430816|unknown	REV__ENSG00000236543|ENST00000430816|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.779541015625	2	492.803094	983.591636	0.020234	9.9715E-06	-0.32781	-0.00016154	-0.30757	-0.00015157	492.8028923040374	50.121	0.57503	49.97	49.745	50.32	-0.1512					34	16	3	0	0	0	0.027866	1	5188	5188		33.516	8.0654	1	764210	+		65380	28934	46074	46140	70577	70577					0.09918360785025016
RALMFWVV	8	Unmodified	_RALMFWVV_					0	0	0		ENST00000464769.1_1_3:52874512-52877125:-|nuORF	ENST00000464769.1_1_3:52874512-52877125:-|nuORF	ENST00000464769.1_1_3:52874512-52877125:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7647399902344	2	511.286223	1020.55789	-0.0053967	-2.7592E-06	-2.8602	-0.0014624	-2.8656	-0.0014651	511.28489122017544	25.108	0.70667	25.188	24.916	25.622	0.08009					21	16	2	0	0	0	0.027866	1	1162	1162		39.021	1.8624	1	120280			65381	14770	46075	46141	70578	70578					0.048436160216397184
RALMVTSL	8	Unmodified	_RALMVTSL_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7455139160156	2	445.760038	889.505523	-0.31311	-0.00013957	-3.2402	-0.0014443	-3.5533	-0.0015839	445.758553506474	24.828	0.39	24.613	24.418	24.809	-0.2151					13	8	2	0	0	0	0.027866	1	1120	1120		38.806	15.764	1	110220			65382	10872	46076	46142	70579	70579					0.056350328880284906
RALNFAYTV	9	Unmodified	_RALNFAYTV_					0	0	0		MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant;ENSG00000160294|ENST00000291688|MCM3AP	MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2644653320312	2	527.787641	1053.56073	-0.64916	-0.00034262	4.0936	0.0021606	3.4445	0.001818	527.7899155127778	48.746	1.0472	48.593	48.433	49.481	-0.15277					38	28	2	0	0	0	0.024436	1	4943	4943		10.866	0	1	258020			65383	17957	46077	46143	70580	70580					0.03609162680118061
RALNQEQVI	9	Unmodified	_RALNQEQVI_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.8010864257812	2	535.80128	1069.58801	-0.3028	-0.00016224	-0.13837	-7.414E-05	-0.44117	-0.00023638	535.8011565550015	41.137	1.1993	41.137	40.657	41.856	0					93	33	5	0	0	0	0.15366	2	3682	3682;3695		98.629	16.389	1	6247500			65384	7126	46078	46144	70581;70582	70581					0.05599646220525756
RALNQEQVI	9	Unmodified	_RALNQEQVI_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.801025390625	2	535.80128	1069.58801	-0.2387	-0.0001279	-0.051848	-2.778E-05	-0.29055	-0.00015568	535.801218117727	41.325	1.3115	41.202	40.618	41.93	-0.12317					97	36	4	0	0	0	0.26966	2	3688	3688;3701		79.713	8.3347	1	5682500			65385	7126	46078	46144	70583;70584	70583					0.05599646220525756
RALNQEQVI	9	Unmodified	_RALNQEQVI_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.80078125	2	535.80128	1069.58801	-0.55966	-0.00029987	0.28818	0.00015441	-0.27149	-0.00014546	535.8012907264878	41.319	1.1908	41.342	40.83	42.021	0.023006					84	33	4	0	0	0	0.15366	2	3638	3638;3649		98.629	18.917	1	6015400			65386	7126	46078	46144	70585;70586	70585					0.05599646220525756
RALNQYQAQL	10	Unmodified	_RALNQYQAQL_					0	0	0		ENST00000536140.5_1_12:6940196-6942935:+|nuORF;ENST00000538102.5_1_12:6939819-6943209:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3	ENST00000536140.5_1_12:6940196-6942935:+|nuORF	ENST00000536140.5_1_12:6940196-6942935:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.57073974609375	3	402.219283	1203.63602	2.0302	0.00081659	1.9757	0.00079468	4.0059	0.0016113	402.21991369830516	19.959	0.49436	19.759	19.355	19.85	-0.2001					12	9	2	0	0	0	0.03519	1	480	480		10.104	0.45776	1	26327			65387	3065	46079	46145	70587	70587					0.04234720140561876
RALNVKLI	8	Unmodified	_RALNVKLI_					0	0	0			REV__nc|ENSG00000162174|Q7L266-2|ASRGL1	REV__nc|ENSG00000162174|Q7L266-2|ASRGL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.2763977050781	2	463.810919	925.607286	-1.1103	-0.00051495	0.51397	0.00023839	-0.5963	-0.00027657	463.81098748077756	37.77	0.4475	37.688	37.503	37.95	-0.082516					19	12	2	0	0	0	0.027866	1	3076	3076		25.45	0	1	329600	+		65388	25419	46080	46146	70588	70588					0.14150647302096786
RALPLFHD	8	Unmodified	_RALPLFHD_					0	0	0		ENST00000299705.9_1_15:79614813-79615029:+|nuORF	ENST00000299705.9_1_15:79614813-79615029:+|nuORF	ENST00000299705.9_1_15:79614813-79615029:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.76702880859375	2	484.769252	967.52395	-0.9066	-0.00043949	-3.7663	-0.0018258	-4.6728	-0.0022653	484.7674367794304	34.947	1.075	34.925	34.634	35.709	-0.021763					59	27	3	0	0	0	0.65272	1	2617	2617		71.378	14.657	1	16700000			65389	11890	46081	46147	70589	70589					0.038889108542207396
RALPLIPIV	9	Unmodified	_RALPLIPIV_					0	0	0		ENST00000596070.1_1_19:6361585-6362062:+|nuORF;ENSG00000125656|ENST00000245816|CLPP;ENST00000594780.1_1_19:6361708-6364854:+|nuORF	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7738952636719	2	496.33677	990.658987	0.56742	0.00028163	-0.83145	-0.00041268	-0.26403	-0.00013105	496.3363103151308	77.342	0.71054	77.342	77.082	77.792	0					32	16	3	0	0	0	0.024487	1	9603	9603		31.955	6.5047	1	298110			65390	4125	46082	46148	70590	70590					0.16328390995988684
RALPLIPIV	9	Unmodified	_RALPLIPIV_					0	0	0		ENST00000596070.1_1_19:6361585-6362062:+|nuORF;ENSG00000125656|ENST00000245816|CLPP;ENST00000594780.1_1_19:6361708-6364854:+|nuORF	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7742004394531	2	496.33677	990.658987	0.17015	8.4452E-05	-0.21321	-0.00010582	-0.043061	-2.1373E-05	496.3365015401901	77.486	0.75045	77.275	77.08	77.83	-0.21087					27	17	2	0	0	0	0.024506	1	9586	9586		30.504	5.0535	1	249860			65391	4125	46082	46148	70591	70591					0.16328390995988684
RALPLLLL	8	Unmodified	_RALPLLLL_					0	0	0		NOTCH3|p.G289Vfs*83|1|0.32|ENSG00000074181|chr19:15191594-15191594|C/-|frameshift_variant;ENSG00000074181|ENST00000263388|NOTCH3;NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant;NOTCH3|p.A1930Cfs*2|1|0.13|ENSG00000074181|chr19:15165395-15165396|-/A|frameshift_variant	REV__ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000074181|ENST00000263388|NOTCH3	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.2839050292969	2	454.818213	907.621873	-0.65121	-0.00029618	0.9352	0.00042535	0.28399	0.00012917	454.8184930048259	84.226	0.80085	84.153	83.83	84.631	-0.072769					37	18	3	0	0	0	0.027866	1	10467	10467		1.2052	0	1	474240			65392	23497;1524	46083	46149	70592	70592					0.16436719450234705
RALPPRPTW	9	Unmodified	_RALPPRPTW_					0	0	0			REV__ENST00000495137.5_1_6:397193-397247:+|nuORF	REV__ENST00000495137.5_1_6:397193-397247:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3203125	2	547.3169	1092.61925	1.8448	0.0010097	4.3585	0.0023855	6.2033	0.0033952	547.3190463221744	19.037	0.59373	18.803	18.483	19.077	-0.23345					24	11	4	0	0	0	0.89441	1	352	352		32.812	0.85756	1	157120	+		65393	33795	46084	46150	70593	70593					0.07664264045274649
RALPRGAR	8	Unmodified	_RALPRGAR_					0	0	0		ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2613525390625	2	448.780485	895.546417	-0.30991	-0.00013908	2.4197	0.0010859	2.1098	0.00094685	448.78191487149155	41.61	0.65754	41.382	40.966	41.624	-0.2278					29	16	2	0	0	0	0.027866	1	3651	3651		38.806	0	1	189990			65394	11272	46085	46151	70594	70594					0.09446555042518412
RALPVFEQF	9	Unmodified	_RALPVFEQF_					0	0	0		ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8048095703125	2	553.803291	1105.59203	0.1061	5.8756E-05	-2.5737	-0.0014253	-2.4676	-0.0013665	553.8018880901611	68.258	0.73276	68.002	67.821	68.554	-0.25516					34	17	3	0	0	0	0.28753	2	7877	7877;7890		77.318	15.21	1	1330300			65395	3211	46086	46152	70595;70596	70595					0.0434573571421879
RALPVFEQF	9	Unmodified	_RALPVFEQF_					0	0	0		ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8041381835938	2	553.803291	1105.59203	0.38283	0.00021201	-2.3813	-0.0013188	-1.9985	-0.0011068	553.8022475853755	68.27	1.0021	68.036	67.797	68.799	-0.23376					36	24	2	0	0	0	0.22902	1	7890	7890		85.161	18.732	1	1279400			65396	3211	46086	46152	70597	70597					0.0434573571421879
RALPVFEQF	9	Unmodified	_RALPVFEQF_					0	0	0		ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	ENSG00000112406|ENST00000367658|HECA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8041381835938	2	553.803291	1105.59203	0.30213	0.00016732	-2.4055	-0.0013322	-2.1034	-0.0011649	553.8019148751201	68.248	0.60486	68.017	67.835	68.439	-0.23047					31	14	3	0	0	0	0.28753	1	7874	7874		77.318	8.5308	1	1155600			65397	3211	46086	46152	70598	70598					0.0434573571421879
RALQAPDP	8	Unmodified	_RALQAPDP_					0	0	0		ENSG00000100209|ENST00000216027|HSCB	ENSG00000100209|ENST00000216027|HSCB	ENSG00000100209|ENST00000216027|HSCB	MSMS	OPSCC_40_ClassI_Rep-1	4	434.2415466308594	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.438	1	97.302	96.802	97.802	-0.1367								0	0	0	0.71153	1	12047	12047		40.573	3.4135	1				65398	2149	46087	46153	70599	70599					0.022443450661853603
RALQGLRRG	9	Unmodified	_RALQGLRRG_					0	0	0		ENST00000300051.8_2_16:75149460-75150658:-|nuORF	ENST00000300051.8_2_16:75149460-75150658:-|nuORF	ENST00000300051.8_2_16:75149460-75150658:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7998657226562	2	513.817599	1025.62064	-0.94852	-0.00048737	-3.4746	-0.0017853	-4.4231	-0.0022727	513.8156433009345	44.854	0.93732	44.755	44.317	45.254	-0.099445					54	24	4	0	0	0	0.024457	1	4282	4282		10.265	3.0719	1	2718800			65399	11894	46088	46154	70600	70600					0.10885898134029048
RALRAAAGP	9	Unmodified	_RALRAAAGP_					0	0	0		ENSG00000183971|ENST00000566435|NPW	ENSG00000183971|ENST00000566435|NPW	ENSG00000183971|ENST00000566435|NPW	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7670593261719	2	441.767043	881.519533	-0.27725	-0.00012248	0.35926	0.00015871	0.082007	3.6228E-05	441.76708713208853	26.126	1.1634	26.103	25.82	26.984	-0.023088					49	27	3	0	0	0	0.83071	1	1281	1281		37.159	0	1	2054400			65400	9297	46089	46155	70601	70601					0.07403446431317207
RALRDGEVF	9	Unmodified	_RALRDGEVF_					0	0	0		nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	nc|ENSG00000215041|Q96JN8-2|NEURL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.781494140625	2	531.788173	1061.56179	-0.25779	-0.00013709	2.6409	0.0014044	2.3832	0.0012673	531.7894898288939	59.984	0.25679	59.808	59.592	59.849	-0.1761					10	6	2	0	0	0	0.024427	1	6626	6626		42.396	6.7778	1	153160			65401	10580	46090	46156	70602	70602					0.03347377049044553
RALSAVHS	8	Unmodified	_RALSAVHS_					0	0	0		nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2278747558594	2	420.737951	839.46135	-0.54361	-0.00022872	0.51043	0.00021476	-0.033185	-1.3962E-05	420.7379711296182	25.894	0.47471	25.871	25.567	26.042	-0.023087					23	10	3	0	0	0	0.027866	1	1241	1241		19.36	0	1	36106			65402	6896	46091	46157	70603	70603					0.035197647860513825
RALSEPLLP	9	Unmodified	_RALSEPLLP_					0	0	0			REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.30218505859375	2	498.297842	994.581131	-0.13703	-6.828E-05	3.326	0.0016573	3.189	0.0015891	498.2992598115992	81.726	0.68987	81.726	81.382	82.072	0					35	16	3	0	0	0	0.024374	1	10235	10235		32.812	0	1	325090	+		65403	28073	46092	46158	70604	70604					0.0836233333996006
RALSLGTIPSL	11	Unmodified	_RALSLGTIPSL_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.749267578125	2	564.342781	1126.67101	-1.3931	-0.0007862	0.93303	0.00052655	-0.46009	-0.00025965	564.3432894146888	55.627	0.48128	55.725	55.484	55.965	0.098015					19	12	2	0	0	0	0.024502	1	6054	6054		67.494	21.037	1	217210			65404	9753	46093	46159	70605	70605					0.11273962948530425
RALSPKRR	8	Unmodified	_RALSPKRR_					0	0	0			REV__ENST00000325327.3_1_19:2430913-2431604:-|nuORF	REV__ENST00000325327.3_1_19:2430913-2431604:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2697448730469	2	492.314692	982.614831	-1.0488	-0.00051633	0.67717	0.00033338	-0.37162	-0.00018295	492.3147964388416	25.723	0.29263	25.496	25.394	25.686	-0.22683					11	6	2	0	0	0	0.027866	1	1237	1237		12.207	3.9756	1	90328	+		65405	30389	46094	46160	70606	70606					0.12282799622369112
RALSWAEG	8	Unmodified	_RALSWAEG_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.2280578613281	2	445.229959	888.445365	-0.72927	-0.00032469	-3.6403	-0.0016208	-4.3696	-0.0019455	445.2282174360294	26.285	1.5865	26.049	25.843	27.429	-0.23603					91	40	4	0	0	0	0.96769	1	1340	1340		42.396	6.7778	1	3852200	+		65406	19813	46095	46161	70607	70607					-0.0033194145086099525
RALSWAEG	8	Unmodified	_RALSWAEG_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.2279052734375	2	445.229959	888.445365	-0.2891	-0.00012872	-4.0568	-0.0018062	-4.3459	-0.0019349	445.22803051653125	26.11	1.524	25.942	25.662	27.186	-0.16816					93	39	4	0	0	0	0.94517	2	1343	1318;1343		45.952	8.9161	1	5333000	+		65407	19813	46095	46161	70608;70609	70609					-0.0033194145086099525
RALSWAEG	8	Unmodified	_RALSWAEG_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.22784423828125	2	445.229959	888.445365	-0.82305	-0.00036645	-3.6598	-0.0016295	-4.4829	-0.0019959	445.22819562186953	26.116	1.543	25.953	25.716	27.259	-0.16331					112	40	4	0	0	0	0.87148	4	1314	1302;1314;1326;1338		53.351	17.733	1	5899800	+		65408	19813	46095	46161	70610;70611;70612;70613	70611					-0.0033194145086099525
RALTCAHVK	9	Unmodified	_RALTCAHVK_					0	0	0			REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.779296875	2	499.781836	997.549119	-0.64303	-0.00032137	-2.7216	-0.0013602	-3.3646	-0.0016816	499.78017499512595	32.711	0.89037	32.723	32.338	33.228	0.011787					69	23	4	0	0	0	0.56934	1	2279	2279		54.776	0.01164	1	3756100	+		65409	21954	46096	46162	70614	70614					0.05024642385160405
RALTCAHVK	9	Unmodified	_RALTCAHVK_					0	0	0			REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	REV__nc|ENSG00000111877|Q9NXL9-4|MCM9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7795715332031	2	499.781836	997.549119	0.096677	4.8317E-05	-3.38	-0.0016893	-3.2834	-0.001641	499.7798017173027	32.623	0.90079	32.686	32.315	33.216	0.062885					99	23	6	0	0	0	0.26966	1	2240	2240		79.713	2.866	1	3514200	+		65410	21954	46096	46162	70615	70615					0.05024642385160405
RALTFFAE	8	Unmodified	_RALTFFAE_					0	0	0			REV__ENST00000558119.5_1_15:63537012-63555815:+|nuORF	REV__ENST00000558119.5_1_15:63537012-63555815:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3004150390625	2	477.75581	953.497067	0.1534	7.3287E-05	4.4003	0.0021023	4.5537	0.0021756	477.75730985583857	33.266	0.47934	33.035	32.835	33.314	-0.23107					21	11	3	0	0	0	0.027866	1	2354	2354		25.45	2.4077	1	77237	+		65411	25972	46097	46163	70616	70616					0.018458022430422716
RALTLKDI	8	Unmodified	_RALTLKDI_					0	0	0		ENSG00000078098|ENST00000188790|FAP	ENSG00000078098|ENST00000188790|FAP	ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.31549072265625	2	465.292559	928.570566	-0.070491	-3.2799E-05	0.3903	0.0001816	0.31981	0.0001488	465.2925521417299	61.15	0.60771	60.944	60.734	61.341	-0.20599					30	14	3	0	0	0	0.027866	1	6860	6860		60.972	0	1	978040			65412	1627	46098	46164	70617	70617					0.10342350685516521
RALVFMEW	8	Unmodified	_RALVFMEW_					0	0	0		ENST00000374151.7_1_10:50363269-50363437:-|nuORF	ENST00000374151.7_1_10:50363269-50363437:-|nuORF	ENST00000374151.7_1_10:50363269-50363437:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7587890625	2	526.273312	1050.53207	-0.35234	-0.00018543	1.6262	0.00085581	1.2738	0.00067039	526.2739571567566	56.636	0.62141	56.469	56.165	56.786	-0.1672					23	15	2	0	0	0	0.027866	1	6191	6191		24.203	15.971	1	290890			65413	13101	46099	46165	70618	70618					0.008827217793623277
RALVFMEW	8	Unmodified	_RALVFMEW_					0	0	0		ENST00000374151.7_1_10:50363269-50363437:-|nuORF	ENST00000374151.7_1_10:50363269-50363437:-|nuORF	ENST00000374151.7_1_10:50363269-50363437:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.273312	1050.53207	0.13996	7.3656E-05	1.179	0.00062047	1.3189	0.00069412	526.2735496230397	56.704	0.49904	56.502	56.211	56.71	-0.20209	0.020763	-0.00018157	NaN	24.203	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309510			65414	13101	46099	46165							0.008827217793623277
RALVFMEW	8	Unmodified	_RALVFMEW_					0	0	0		ENST00000374151.7_1_10:50363269-50363437:-|nuORF	ENST00000374151.7_1_10:50363269-50363437:-|nuORF	ENST00000374151.7_1_10:50363269-50363437:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.273312	1050.53207	0.2585	0.00013604	0.86552	0.0004555	1.124	0.00059154	526.273712363904	56.698	0.66729	56.473	55.915	56.582	-0.2248	-0.008302	-0.00051151	NaN	24.203	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243550			65415	13101	46099	46165							0.008827217793623277
RALYRAVML	9	Unmodified	_RALYRAVML_					0	0	0		ENST00000594682.6_1_19:53122308-53193715:-|nuORF;ENST00000598190.1_1_19:53158712-53193715:-|nuORF;ENSG00000180257|ENST00000444460|ZNF816	ENST00000594682.6_1_19:53122308-53193715:-|nuORF	ENST00000594682.6_1_19:53122308-53193715:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8193359375	2	546.820961	1091.62737	-1.4479	-0.00079176	0.51305	0.00028055	-0.93487	-0.00051121	546.8219583750024	64.601	1.0866	64.338	63.864	64.95	-0.2626					78	28	4	0	0	0	0.72875	1	7595	7595		44.117	3.5442	1	7472700			65416	8968	46100	46166	70619	70619					0.08522074970392168
RAMDGRTP	8	Unmodified	_RAMDGRTP_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENST00000434366.5_1_2:165561593-165697754:-|nuORF;ENST00000483743.5_1_2:165600108-165698476:-|nuORF;ENST00000496396.1_1_2:165600108-165698346:-|nuORF;ENST00000491126.6_1_2:165561593-165698829:-|nuORF;ENST00000444537.5_1_2:165636273-165698319:-|nuORF	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2283935546875	2	452.226894	902.439234	0.28257	0.00012779	2.6572	0.0012016	2.9397	0.0013294	452.2281336291809	103.03	1.39	102.86	102.46	103.85	-0.17034					74	33	5	0	0	0	1.0009	1	12823	12823		37.159	5.2042	1	4566600			65417	18094	46101	46167	70620	70620					-0.015887829540361054
RAMDLVKLD	9	Unmodified	_RAMDLVKLD_					0	0	0			REV__ENSG00000007216|ENST00000314669|SLC13A2	REV__ENSG00000007216|ENST00000314669|SLC13A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7994384765625	2	530.794609	1059.57467	-0.96121	-0.00051021	-2.5391	-0.0013477	-3.5003	-0.0018579	530.7913537676823	83.467	0.59884	83.494	83.215	83.814	0.026558					20	13	2	0	0	0	0.024025	1	10354	10354		71.877	32.625	1	113150	+		65418	19856	46102	46168	70621	70621					0.047260721169323006
RAMDTLKIP	9	Unmodified	_RAMDTLKIP_					0	0	0		ENSG00000156052|ENST00000286548|GNAQ;GNAQ|p.A110Efs*10|1|0.17|ENSG00000156052|chr9:77815763-77815764|-/GAGGTTT|frameshift_variant	ENSG00000156052|ENST00000286548|GNAQ	ENSG00000156052|ENST00000286548|GNAQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.809814453125	2	522.797152	1043.57975	-0.50035	-0.00026158	-1.9565	-0.0010229	-2.4569	-0.0012844	522.7950580445217	53.533	1.0274	53.629	53.23	54.258	0.095669					52	28	3	0	0	0	0.023239	1	5734	5734		84.916	20.708	1	418800			65419	6510	46103	46169	70622	70622					0.05970375979518394
RAMFNRIY	8	Unmodified	_RAMFNRIY_					0	0	0			REV__ENST00000481123.1_1_7:139025345-139030484:+|nuORF	REV__ENST00000481123.1_1_7:139025345-139030484:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	535.7791748046875	2	535.781836	1069.54912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.615	1	63.423	62.923	63.923	-0.19243								0	0	0	0.40831	1	7201	7201		65.897	2.5912	1		+		65420	33445	46104	46170	70623	70623					0.0171264238515505
RAMNFVRW	8	Unmodified	_RAMNFVRW_					0	0	0		ENST00000216117.8_1_22:35789599-35789908:+|nuORF	ENST00000216117.8_1_22:35789599-35789908:+|nuORF	ENST00000216117.8_1_22:35789599-35789908:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8064575195312	2	540.282003	1078.54945	-0.81015	-0.00043771	3.0284	0.0016362	2.2183	0.0011985	540.2835327326771	52.644	0.80487	52.644	52.391	53.196	0					14	8	2	0	0	0	0.027866	1	5649	5649		60.294	0	1	340500			65421	11154	46105	46171	70624	70624					0.013320621050070258
RAMVSPRCL	9	Unmodified	_RAMVSPRCL_					0	0	0			REV__ENST00000361672.6_1_X:11793354-11793456:+|nuORF	REV__ENST00000361672.6_1_X:11793354-11793456:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.7757568359375	2	516.775696	1031.53684	-0.28058	-0.000145	-3.4807	-0.0017988	-3.7613	-0.0019438	516.7735957094866	24.89	0.36557	24.968	24.639	25.005	0.078344					19	7	3	0	0	0	0.5973	1	1060	1060		52.937	3.4007	1	2982900	+		65422	30946	46106	46172	70625	70625					0.022332826504452896
RANAGRQPR	9	Unmodified	_RANAGRQPR_					0	0	0		ENST00000549572.5_1_12:53895423-53895927:+|nuORF	ENST00000549572.5_1_12:53895423-53895927:+|nuORF	ENST00000549572.5_1_12:53895423-53895927:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3082275390625	2	513.289205	1024.56386	0.036839	1.8909E-05	-2.6034	-0.0013363	-2.5666	-0.0013174	513.2843313081214	54.012	1.2126	54.11	53.595	54.807	0.098015					84	34	4	0	0	0	0.024323	1	5857	5857		44.117	13.613	1	3274200			65423	16569	46107	46173	70626	70626					0.05255850577509591
RANAVVLVK	9	Unmodified	_RANAVVLVK_					0	0	0		SLC45A4|p.I449V|1|0.2|ENSG00000022567|chr8:141218295-141218295|T/C|missense_variant	SLC45A4|p.I449V|1|0.2|ENSG00000022567|chr8:141218295-141218295|T/C|missense_variant	SLC45A4|p.I449V|1|0.2|ENSG00000022567|chr8:141218295-141218295|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.31390380859375	2	485.313826	968.613099	-1.1967	-0.00058078	0.65369	0.00031725	-0.54303	-0.00026354	485.3139540040231	44.1	1.7136	44.1	43.8	45.514	0					116	49	5	0	0	0	0.25032	1	4203	4203		82.305	0	1	43296000			65424	37892	46108	46174	70627	70627					0.12753745813768091
RANAVVLVKP	10	Unmodified	_RANAVVLVKP_					0	0	0		SLC45A4|p.I449V|1|0.2|ENSG00000022567|chr8:141218295-141218295|T/C|missense_variant	SLC45A4|p.I449V|1|0.2|ENSG00000022567|chr8:141218295-141218295|T/C|missense_variant	SLC45A4|p.I449V|1|0.2|ENSG00000022567|chr8:141218295-141218295|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8035888671875	2	533.840208	1065.66586	-0.53882	-0.00028764	0.005888	3.1432E-06	-0.53293	-0.0002845	533.840042062274	33.893	0.58328	33.889	33.715	34.298	-0.0045624					21	14	2	0	0	0	0.03519	1	2529	2529		27.882	4.8398	1	128220			65425	37892	46109	46175	70628	70628					0.1356570387656575
RANGPCRRAL	10	Unmodified	_RANGPCRRAL_					0	0	0			REV__ENST00000426508.6_2_16:1657253-1660715:-|nuORF	REV__ENST00000426508.6_2_16:1657253-1660715:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.3048706054688	2	557.306541	1112.59853	0.13353	7.4417E-05	-3.5552	-0.0019814	-3.4217	-0.0019069	557.304443997796	21.043	0.9126	20.866	20.581	21.494	-0.17721					42	18	4	0	0	0	0.941	1	625	625		51.335	5.3632	1	543910	+		65426	32273	46110	46176	70629	70629					0.04673350393954934
RANKLVLSV	9	Unmodified	_RANKLVLSV_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.32122802734375	2	500.319109	998.623664	-0.27699	-0.00013858	0.21893	0.00010953	-0.058062	-2.905E-05	500.3190133909352	25.864	0.80261	25.693	25.457	26.259	-0.17078					40	22	4	0	0	0	0.72494	1	1278	1278		44.377	7.9304	1	1326900	+		65427	26969	46111	46177	70630	70630					0.12429728468168832
RANKLVLSV	9	Unmodified	_RANKLVLSV_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.2079772949219	2	500.319109	998.623664	-1.3287	-0.00066476	4.127	0.0020648	2.7983	0.0014001	500.3208519797607	44.139	0.39848	43.92	43.709	44.108	-0.21939					12	10	2	0	0	0	0.02435	1	4053	4053		34.173	1.3601	1	144360	+		65428	26969	46111	46177	70631	70631					0.12429728468168832
RANNLENLN	9	Unmodified	_RANNLENLN_					0	0	0		ENST00000474629.6_1_3:122447564-122447771:+|nuORF	ENST00000474629.6_1_3:122447564-122447771:+|nuORF	ENST00000474629.6_1_3:122447564-122447771:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8207397460938	2	529.272887	1056.53122	-0.33184	-0.00017564	-3.8747	-0.0020508	-4.2066	-0.0022264	529.270584107931	54.846	0.3491	54.944	54.733	55.083	0.098015					16	9	2	0	0	0	0.024405	1	5934	5934		35.618	0	1	187810			65429	15036	46112	46178	70632	70632					0.0052159866399961174
RANQPADP	8	Unmodified	_RANQPADP_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7481994628906	2	434.717216	867.419879	0.21993	9.5607E-05	1.8221	0.00079211	2.0421	0.00088772	434.71808958118135	65.301	0.16699	65.338	65.288	65.455	0.037384					5	4	2	0	0	0	0.027866	1	7650	7650		24.203	0	1	445320	+		65430	28959	46113	46179	70633	70633					-0.019134159732971057
RANQRKNPP	9	Unmodified	_RANQRKNPP_					0	0	0			REV__ENST00000571658.2_2_17:45008316-45008574:+|nuORF	REV__ENST00000571658.2_2_17:45008316-45008574:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8311767578125	2	540.804688	1079.59482	-1.6132	-0.00087244	-3.0076	-0.0016265	-4.6209	-0.002499	540.8030155449437	75.301	0.34734	75.301	74.995	75.343	0					12	8	2	0	0	0	0.024436	1	9232	9232		47.916	10.756	1	268090	+		65431	21735	46114	46180	70634	70634					0.05821003891765031
RANRRPALALT	11	Unmodified	_RANRRPALALT_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-4|MED16	REV__nc|ENSG00000175221|Q9Y2X0-4|MED16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.7346496582031	3	413.586189	1237.73674	0.96452	0.00039891	2.1621	0.00089422	3.1266	0.0012931	413.5866200380737	41.266	0.42539	41.266	41.153	41.579	0					16	11	2	0	0	0	0.024801	1	3731	3731		8.7993	0	1	43482	+		65432	36957	46115	46181	70635	70635					0.12737796914052524
RANVNARTF	9	Unmodified	_RANVNARTF_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000473400.1_1_10:104160383-104160916:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.7859497070312	2	524.785964	1047.55738	-0.54109	-0.00028396	0.70314	0.000369	0.16205	8.5041E-05	524.7859893645822	27.33	0.85198	27.088	26.657	27.509	-0.24217					65	19	5	0	0	0	0.077175	2	1511	1500;1511		118.74	44.768	1	2089500			65433	1601	46116	46182	70636;70637	70637					0.03549912626112928
RANVNARTF	9	Unmodified	_RANVNARTF_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000473400.1_1_10:104160383-104160916:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.7857055664062	2	524.785964	1047.55738	-0.51037	-0.00026783	0.52562	0.00027584	0.015254	8.0049E-06	524.7859207092479	27.167	0.72215	26.998	26.68	27.402	-0.16816					57	16	5	0	0	0	0.12914	2	1481	1470;1481		104.06	40.751	1	2125800			65434	1601	46116	46182	70638;70639	70639					0.03549912626112928
RANVNARTF	9	Unmodified	_RANVNARTF_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000473400.1_1_10:104160383-104160916:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.7855834960938	2	524.785964	1047.55738	-0.22004	-0.00011547	0.32923	0.00017278	0.10919	5.7303E-05	524.7858340141022	27.288	0.67591	27.131	26.802	27.477	-0.15664					56	15	6	0	0	0	0.1158	2	1474	1462;1474		107.01	42.8	1	2520300			65435	1601	46116	46182	70640;70641	70641					0.03549912626112928
RANYWIEF	8	Unmodified	_RANYWIEF_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.279296875	2	549.771991	1097.52943	-0.73445	-0.00040378	-4.1476	-0.0022802	-4.882	-0.002684	549.7697065800193	77.66	0.66722	77.676	77.406	78.073	0.015778					21	15	2	0	0	0	0.027866	1	9547	9547		31.955	0	1	516370	+		65436	22881	46117	46183	70642	70642					-0.015434103539519128
RAPAAPRPW	9	Unmodified	_RAPAAPRPW_					0	0	0		ENST00000544543.5_3_16:89168774-89169148:+|nuORF;ENST00000540697.5_1_16:89160361-89169151:+|nuORF;ENST00000317447.8_1_16:89167661-89169148:+|nuORF	ENST00000544543.5_3_16:89168774-89169148:+|nuORF	ENST00000544543.5_3_16:89168774-89169148:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.28399658203125	2	511.288143	1020.56173	-0.649	-0.00033183	-3.1522	-0.0016117	-3.8012	-0.0019435	511.28615388143845	21.515	1.1129	21.587	21.057	22.17	0.071487					48	22	4	0	0	0	0.85329	1	625	625		35.618	2.1253	1	368280			65437	12164	46118	46184	70643	70643					0.052274218396860306
RAPAAPRPW	9	Unmodified	_RAPAAPRPW_					0	0	0		ENST00000544543.5_3_16:89168774-89169148:+|nuORF;ENST00000540697.5_1_16:89160361-89169151:+|nuORF;ENST00000317447.8_1_16:89167661-89169148:+|nuORF	ENST00000544543.5_3_16:89168774-89169148:+|nuORF	ENST00000544543.5_3_16:89168774-89169148:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.288143	1020.56173	-0.92267	-0.00047175	-3.2529	-0.0016632	-4.1756	-0.0021349	511.286276430937	21.564	0.72109	21.564	21.244	21.965	0	-0.024017	-7.8433E-05	NaN	35.618	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290860			65438	12164	46118	46184							0.052274218396860306
RAPAAPRPW	9	Unmodified	_RAPAAPRPW_					0	0	0		ENST00000544543.5_3_16:89168774-89169148:+|nuORF;ENST00000540697.5_1_16:89160361-89169151:+|nuORF;ENST00000317447.8_1_16:89167661-89169148:+|nuORF	ENST00000544543.5_3_16:89168774-89169148:+|nuORF	ENST00000544543.5_3_16:89168774-89169148:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.288143	1020.56173	-0.45715	-0.00023374	-2.7749	-0.0014188	-3.2321	-0.0016525	511.28601803524674	21.703	0.90955	21.613	21.158	22.067	-0.090092	0.025173	0.00041037	NaN	35.618	55	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286480			65439	12164	46118	46184							0.052274218396860306
RAPAATLLR	9	Unmodified	_RAPAATLLR_					0	0	0			REV__ENST00000369558.5_1_1:114472360-114472540:+|nuORF	REV__ENST00000369558.5_1_1:114472360-114472540:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.80377197265625	2	484.803626	967.592698	-0.76523	-0.00037099	-0.20538	-9.9568E-05	-0.97061	-0.00047056	484.8034214798409	34.819	0.75994	34.797	34.474	35.233	-0.021763					46	19	3	0	0	0	0.6238	1	2607	2607		51.193	1.7511	1	2951200	+		65440	31094	46119	46185	70644	70644					0.10760575153949503
RAPAKGPQ	8	Unmodified	_RAPAKGPQ_					0	0	0		ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.88720703125	2	412.740494	823.466435	-0.51397	-0.00021214	1.0248	0.00042298	0.51084	0.00021085	412.7406017218689	27.289	0.38506	27.121	26.931	27.317	-0.16816					12	8	2	0	0	0	0.027866	1	1513	1513		12.959	0	1	89312			65441	6907	46120	46186	70645	70645					0.047640686486602135
RAPAPLAAP	9	Unmodified	_RAPAPLAAP_					0	0	0			REV__ENST00000274849.2_1_6:26597317-26597446:+|nuORF	REV__ENST00000274849.2_1_6:26597317-26597446:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.2585754394531	2	432.25852	862.502486	-0.97632	-0.00042202	1.2845	0.00055525	0.30821	0.00013323	432.2589662317753	35.673	0.99632	35.63	35.176	36.172	-0.042458					60	26	3	0	0	0	0.70186	1	2764	2764		45.952	7.1458	1	2685400	+		65442	29841	46121	46187	70646	70646					0.06573525825501747
RAPAPPTRPS	10	Unmodified	_RAPAPPTRPS_					0	0	0			REV__ENSG00000139200|ENST00000534837|PIANP	REV__ENSG00000139200|ENST00000534837|PIANP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.27197265625	2	525.296165	1048.57778	-1.0314	-0.00054181	-3.2309	-0.0016972	-4.2624	-0.002239	525.796108192076	39.29	0.14168	39.191	39.127	39.269	-0.098751					5	3	2	0	0	0	0.03519	1	3350	3350		40.778	0	1	94072	+		65443	23925	46122	46188	70647	70647					0.05543083285920147
RAPAVDAL	8	Unmodified	_RAPAVDAL_					0	0	0			REV__ENST00000378116.8_1_10:15254619-15254727:-|nuORF	REV__ENST00000378116.8_1_10:15254619-15254727:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.7348937988281	2	406.734877	811.455202	0.064297	2.6152E-05	0.30017	0.00012209	0.36447	0.00014824	406.73486049701273	22.375	0.93793	22.173	21.855	22.793	-0.20199					48	19	4	0	0	0	0.81662	1	753	753		57.811	7.7867	1	918780	+		65444	31390	46123	46189	70648	70648					0.04193246554507368
RAPDGRSP	8	Unmodified	_RAPDGRSP_					0	0	0			REV__ENST00000424722.5_2_2:191874700-191878875:-|nuORF	REV__ENST00000424722.5_2_2:191874700-191878875:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.7846984863281	2	428.225208	854.435863	-0.2709	-0.00011601	1.0288	0.00044055	0.7579	0.00032455	428.2256500593953	25.934	0.45537	25.698	25.425	25.88	-0.23603					22	10	3	0	0	0	0.027866	1	1294	1294		19.36	11.67	1	314210	+		65445	30931	46124	46190	70649	70649					0.0028229026361259457
RAPEWNQV	8	Unmodified	_RAPEWNQV_					0	0	0		ENST00000396594.7_1_9:36217282-36217345:-|nuORF	ENST00000396594.7_1_9:36217282-36217345:-|nuORF	ENST00000396594.7_1_9:36217282-36217345:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.779296875	2	500.253966	998.493378	-0.62162	-0.00031097	1.0113	0.00050589	0.38964	0.00019492	500.254223202241	32.61	1.3221	32.622	32.144	33.466	0.011799					78	35	3	0	0	0	0.027866	1	2279	2279		79.939	3.0926	1	774860			65446	13560	46125	46191	70650	70650					-0.005928675308155107
RAPEWNQV	8	Unmodified	_RAPEWNQV_					0	0	0		ENST00000396594.7_1_9:36217282-36217345:-|nuORF	ENST00000396594.7_1_9:36217282-36217345:-|nuORF	ENST00000396594.7_1_9:36217282-36217345:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7795715332031	2	500.253966	998.493378	-0.067975	-3.4005E-05	0.55528	0.00027778	0.48731	0.00024378	500.25399030319574	32.373	1.467	32.436	31.68	33.147	0.062889					78	37	3	0	0	0	0.027866	1	2240	2240		73.975	16.163	1	695320			65447	13560	46125	46191	70651	70651					-0.005928675308155107
RAPFSAAF	8	Unmodified	_RAPFSAAF_					0	0	0			REV__ENST00000590023.5_1_17:76613597-76626223:-|nuORF	REV__ENST00000590023.5_1_17:76613597-76626223:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.7518005371094	2	433.729595	865.444637	0.46585	0.00020205	-2.7317	-0.0011848	-2.2658	-0.00098276	433.728040663762	19.698	0.56448	19.698	19.414	19.979	0					20	11	3	0	0	0	0.027866	1	426	426		35.201	9.7505	1	28308	+		65448	35688	46126	46192	70652	70652					0.006532639000852214
RAPGHSSD	8	Unmodified	_RAPGHSSD_					0	0	0		ENST00000571580.1_1_16:2983897-2986840:+|nuORF	ENST00000571580.1_1_16:2983897-2986840:+|nuORF	ENST00000571580.1_1_16:2983897-2986840:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.237060546875	2	413.693741	825.372929	0.32931	0.00013623	-0.69112	-0.00028591	-0.36181	-0.00014968	413.6951505713866	76.935	0.62901	76.684	76.314	76.943	-0.25162					23	14	3	0	0	0	0.027866	1	9144	9144		27.882	0	1	177960			65449	17039	46127	46193	70653	70653					-0.0467427552442814
RAPGIQLL	8	Unmodified	_RAPGIQLL_					0	0	0		ENST00000476077.1_1_22:24179058-24181169:-|nuORF	ENST00000476077.1_1_22:24179058-24181169:-|nuORF	ENST00000476077.1_1_22:24179058-24181169:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.27423095703125	2	434.27417	866.533787	1.2122	0.00052642	-1.3311	-0.00057805	-0.11889	-5.1633E-05	434.2735899978598	54.796	1.4449	54.59	54.237	55.682	-0.20613					73	39	4	0	0	0	0.75307	1	5809	5809		62.978	0	1	9428800			65450	15080	46128	46194	70654	70654					0.09518098859598467
RAPGLTPDGGE	11	Unmodified	_RAPGLTPDGGE_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.214599609375	2	535.26727	1068.51999	-0.6223	-0.0003331	-1.0251	-0.00054869	-1.6474	-0.00088179	535.7689240751168	29.707	0.20792	29.557	29.418	29.626	-0.14952					5	4	2	0	0	0	0.024732	1	1806	1806		25.574	18.381	1	26226	+		65451	28866	46129	46195	70655	70655					-0.01153223430151229
RAPHAPPTEP	10	Unmodified	_RAPHAPPTEP_					0	0	0			REV__nc|ENSG00000096063|Q96SB4-3|SRPK1	REV__nc|ENSG00000096063|Q96SB4-3|SRPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3240356445312	2	536.780348	1071.54614	-0.86696	-0.00046537	-3.1601	-0.0016963	-4.027	-0.0021616	536.7785626997829	56.997	0.68235	57.092	56.783	57.465	0.095306					49	18	3	0	0	0	0.03519	1	6272	6272		34.173	2.6427	1	2631800	+		65452	36513	46130	46196	70656	70656					0.01323090531991511
RAPHCCGLPT	10	Unmodified	_RAPHCCGLPT_					0	0	0		ENST00000487567.2_2_1:236687040-236687307:-|nuORF	ENST00000487567.2_2_1:236687040-236687307:-|nuORF	ENST00000487567.2_2_1:236687040-236687307:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.8086547851562	2	527.749679	1053.4848	-0.077908	-4.1116E-05	-1.7552	-0.00092631	-1.8331	-0.00096742	527.748718805158	57.715	0.3387	57.54	57.307	57.646	-0.1749					10	8	2	0	0	0	0.03519	1	6446	6446		25.574	3.6142	1	168320			65453	15369	46131	46197	70657	70657					-0.03979880763313304
RAPHFINI	8	Unmodified	_RAPHFINI_					0	0	0			REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|46|3|anti-sense	REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|46|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.3056945800781	2	484.277244	966.539935	-0.8979	-0.00043483	2.7802	0.0013464	1.8823	0.00091157	484.27829341725925	30.593	0.28877	30.667	30.461	30.75	0.074314					9	6	2	0	0	0	0.027866	1	1904	1904		7.6903	0	1	39775	+		65454	36367	46132	46198	70658	70658					0.05532617091125758
RAPHWGWM	8	Unmodified	_RAPHWGWM_					0	0	0		ENST00000561903.6_1_16:1826945-1828699:+|nuORF	ENST00000561903.6_1_16:1826945-1828699:+|nuORF	ENST00000561903.6_1_16:1826945-1828699:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2857666015625	2	520.747796	1039.48104	-0.8168	-0.00042535	-4.3652	-0.0022731	-5.182	-0.0026985	520.7454163968678	26.583	0.5503	26.665	26.372	26.923	0.081293					17	12	2	0	0	0	0.027866	1	1290	1290		26.796	0	1	48729			65455	16837	46133	46199	70659	70659					-0.037121824748510335
RAPINRDL	8	Unmodified	_RAPINRDL_					0	0	0		ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	ACAN|p.V555Gfs*23|1|0.11|ENSG00000157766|chr15:88847965-88847966|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.77764892578125	2	477.777608	953.540663	-0.080074	-3.8258E-05	-0.84906	-0.00040566	-0.92914	-0.00044392	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.64735	2	1465	1465;1477		71.877	13.096	1	79837000			65456	14	46134	46200	70660;70661	70660					0.0620341174017085
RAPLERGAGP	10	Unmodified	_RAPLERGAGP_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2902221679688	2	512.28834	1022.56213	-0.8698	-0.00044559	4.298	0.0022018	3.4282	0.0017562	512.2903995176083	60.773	0.48664	60.773	60.546	61.032	0					37	12	4	0	0	0	1.0616	1	7013	7013		37.812	0.65241	1	1782100	+		65457	23128	46135	46201	70662	70662					0.05174796768903889
RAPLERGAGP	10	Unmodified	_RAPLERGAGP_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	512.28834	1022.56213	-0.8698	-0.00044559	4.298	0.0022018	3.4282	0.0017562	512.2903995176083	60.773	0.48664	60.773	60.546	61.032	0	0.11902	-9.1741E-05	NaN	37.812	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1782100	+		65458	23128	46135	46201							0.05174796768903889
RAPLERGAGP	10	Unmodified	_RAPLERGAGP_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.28834	1022.56213	-0.53629	-0.00027474	3.8633	0.0019791	3.327	0.0017044	512.2901720180441	61.037	0.60237	60.823	60.493	61.096	-0.21339	0.16906	-0.00053715	NaN	37.812	37	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1675100	+		65459	23128	46135	46201							0.05174796768903889
RAPLERGAGP	10	Unmodified	_RAPLERGAGP_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.28834	1022.56213	-1.4881	-0.00076236	4.8525	0.0024859	3.3643	0.0017235	512.2906386337792	60.66	0.56499	60.739	60.501	61.066	0.078888	0.084654	0.00047637	NaN	37.812	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1549600	+		65460	23128	46135	46201							0.05174796768903889
RAPLERGAGP	10	Unmodified	_RAPLERGAGP_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.28834	1022.56213	-0.36729	-0.00018816	3.6623	0.0018762	3.295	0.001688	512.2891807097559	60.687	0.4088	60.481	60.172	60.581	-0.20599	-0.17346	-0.00074305	NaN	37.812	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92173	+		65461	23128	46135	46201							0.05174796768903889
RAPLERGAGP	10	Unmodified	_RAPLERGAGP_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.28834	1022.56213	-0.70098	-0.00035911	3.9997	0.002049	3.2987	0.0016899	512.2902380092355	60.709	0.37205	60.455	60.212	60.584	-0.25373	-0.19927	-0.00039735	NaN	37.812	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150610	+		65462	23128	46135	46201							0.05174796768903889
RAPLKKKP	8	Unmodified	_RAPLKKKP_					0	0	0		ENST00000465807.1_1_10:102827509-102827728:+|nuORF	ENST00000465807.1_1_10:102827509-102827728:+|nuORF	ENST00000465807.1_1_10:102827509-102827728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.28448486328125	2	469.318912	936.62327	-0.40591	-0.0001905	0.59174	0.00027771	0.18583	8.7211E-05	469.3190080647454	43.265	0.61975	43.265	43.038	43.658	0					31	16	3	0	0	0	0.027866	1	4064	4064		13.775	0	1	470820			65463	14794	46136	46202	70663	70663					0.15242353538974385
RAPLKKKP	8	Unmodified	_RAPLKKKP_					0	0	0		ENST00000465807.1_1_10:102827509-102827728:+|nuORF	ENST00000465807.1_1_10:102827509-102827728:+|nuORF	ENST00000465807.1_1_10:102827509-102827728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2850341796875	2	469.318912	936.62327	-0.25014	-0.0001174	0.42585	0.00019986	0.1757	8.2461E-05	469.3189454035815	43.439	0.54783	43.299	43.027	43.575	-0.13929					31	14	3	0	0	0	0.027866	1	4071	4071		25.45	6.0902	1	495640			65464	14794	46136	46202	70664	70664					0.15242353538974385
RAPLLRGDF	9	Unmodified	_RAPLLRGDF_					0	0	0		ENST00000529988.5_1_11:118992559-118992682:+|nuORF	ENST00000529988.5_1_11:118992559-118992682:+|nuORF	ENST00000529988.5_1_11:118992559-118992682:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2667846679688	2	522.801083	1043.58761	0.012225	6.391E-06	-2.5533	-0.0013348	-2.541	-0.0013285	522.7994623251982	26.097	0.7482	26.178	25.665	26.414	0.081291					32	17	2	0	0	0	0.024506	1	1280	1280		30.504	0	1	188080			65465	16219	46137	46203	70665	70665					0.06756271291305893
RAPLRTAAPK	10	Unmodified	_RAPLRTAAPK_					0	0	0			REV__ENSG00000277893|ENST00000622030|SRD5A2	REV__ENSG00000277893|ENST00000622030|SRD5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8033447265625	2	540.835457	1079.65636	-0.17956	-9.7111E-05	2.6063	0.0014096	2.4267	0.0013124	540.8367439009554	95.676	2.2739	95.68	94.957	97.231	0.0033798					118	52	3	0	0	0	0.03519	1	12253	12253		22.58	13.397	1	368170	+		65466	29209	46138	46204	70666	70666					0.11971935591009242
RAPPAYTK	8	Unmodified	_RAPPAYTK_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24261474609375	2	452.255977	902.497401	0.21788	9.8539E-05	-0.24561	-0.00011108	-0.027731	-1.2541E-05	452.2557270848656	53.33	0.53121	53.33	53.124	53.655	0					33	14	3	0	0	0	0.027866	1	5804	5804		30.504	11.144	1	865810	+		65467	29195	46139	46205	70667	70667					0.042252219628949206
RAPPELPE	8	Unmodified	_RAPPELPE_					0	0	0		nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2;nc|ENSG00000284753|P0DPD7|EEF1AKMT4	nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.8109130859375	2	454.745442	907.476331	0.069913	3.1792E-05	-0.9866	-0.00044865	-0.91669	-0.00041686	454.7446820714611	100.54	0.44639	100.55	100.13	100.58	0.010117					16	10	2	0	0	0	0.027866	1	12778	12778		16.473	0	1	73514			65468	18812	46140	46206	70668	70668					0.01889211863374385
RAPPPPAHEA	10	Unmodified	_RAPPPPAHEA_					0	0	0		ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.748046875	2	521.775065	1041.53558	0.029284	1.528E-05	-1.1085	-0.00057841	-1.0793	-0.00056313	521.7745216572998	36.986	0.46528	36.793	36.537	37.002	-0.193					19	11	2	0	0	0	0.03519	1	2947	2947		39.253	18.306	1	199390			65469	3185	46141	46207	70669	70669					0.01647107877556664
RAPRQGRDG	9	Unmodified	_RAPRQGRDG_					0	0	0		ENST00000421064.5_1_22:23995358-23995538:-|nuORF	ENST00000421064.5_1_22:23995358-23995538:-|nuORF	ENST00000421064.5_1_22:23995358-23995538:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7720947265625	2	506.773388	1011.53222	-0.88531	-0.00044865	-2.3996	-0.0012161	-3.2849	-0.0016647	506.7722215522663	21.405	2.5306	21.405	20.753	23.283	0					110	53	3	0	0	0	0.96906	1	609	609		26.693	2.4902	1	408390			65470	13990	46142	46208	70670	70670					0.026918578235722634
RAPSNRVKGIP	11	Unmodified	_RAPSNRVKGIP_					0	0	0		ENST00000404751.7_2_22:20100088-20100440:-|nuORF;ENST00000487668.5_1_22:20100088-20100349:-|nuORF;ENST00000480339.1_1_22:20100088-20100591:-|nuORF;ENST00000487378.1_1_22:20100088-20100785:-|nuORF;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000404751.7_2_22:20100088-20100440:-|nuORF	ENST00000404751.7_2_22:20100088-20100440:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8560791015625	2	597.856921	1193.69929	-0.69485	-0.00041542	-0.48603	-0.00029058	-1.1809	-0.000706	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	1.0292	1	11593	11593		30.318	3.2704	1	4386000			65471	2094	46143	46209	70671	70671					0.11018705648461946
RAPSPSLLP	9	Unmodified	_RAPSPSLLP_					0	0	0		ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2769470214844	2	469.276909	936.539266	0.087997	4.1295E-05	-0.02548	-1.1957E-05	0.062517	2.9338E-05	469.2767886323168	49.75	1.0047	49.824	49.465	50.47	0.074192					63	28	3	0	0	0	0.42604	1	5096	5096		64.207	0	1	4226500			65472	6889	46144	46210	70672	70672					0.06845777651415119
RAPSWACL	8	Unmodified	_RAPSWACL_					0	0	0		ENST00000556356.1_1_12:57598740-57602363:+|nuORF	ENST00000556356.1_1_12:57598740-57602363:+|nuORF	ENST00000556356.1_1_12:57598740-57602363:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2280578613281	2	452.228905	902.443257	0.28257	0.00012779	-1.7905	-0.00080973	-1.508	-0.00068194	452.2281336291809	103.03	1.39	102.86	102.46	103.85	-0.17034					74	33	5	0	0	0	1.0338	1	12810	12810		31.955	0	1	4566600			65473	16706	46145	46211	70673	70673					-0.011866934603403934
RAPTHGPA	8	Unmodified	_RAPTHGPA_					0	0	0		ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	ENST00000356404.7_1_11:67272681-67272795:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.22747802734375	2	403.717019	805.419485	-0.57383	-0.00023166	0.42774	0.00017269	-0.14609	-5.8979E-05	403.7178706388126	24.935	0.2658	24.9	24.727	24.992	-0.034395					7	5	2	0	0	0	0.027866	1	1106	1106		25.45	4.9683	1	11597			65474	12669	46146	46212	70674	70674					0.008992090975198153
RAPVSPCGF	9	Unmodified	_RAPVSPCGF_					0	0	0			REV__ENST00000521659.5_2_17:4855435-4858958:+|nuORF	REV__ENST00000521659.5_2_17:4855435-4858958:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7900085449219	2	467.234187	932.453822	-0.32415	-0.00015145	3.1959	0.0014932	2.8718	0.0013418	467.2357616209604	26.996	0.51614	27.077	26.841	27.357	0.081293					31	13	3	0	0	0	0.024436	1	1392	1392		23.042	0	1	680990	+		65475	34321	46147	46213	70675	70675					-0.01510710805882809
RAQCITKES	9	Unmodified	_RAQCITKES_					0	0	0		nc|ENSG00000162623|Q6IPR3-2|TYW3;ENSG00000162623|ENST00000370867|TYW3	nc|ENSG00000162623|Q6IPR3-2|TYW3	nc|ENSG00000162623|Q6IPR3-2|TYW3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.8271484375	2	518.266216	1034.51788	-0.38355	-0.00019878	0.35182	0.00018233	-0.031734	-1.6447E-05	518.266031729083	35.021	0.65868	34.834	34.402	35.061	-0.18675					30	16	3	0	0	0	0.024418	1	2629	2629		37.812	0	1	281150			65476	6966	46148	46214	70676	70676					0.002000245603994699
RAQENVPSCC	10	Unmodified	_RAQENVPSCC_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7559204101562	2	553.739508	1105.46446	-0.31532	-0.0001746	1.2506	0.00069248	0.93523	0.00051788	553.7400669117073	26.807	0.63086	26.639	26.301	26.931	-0.16816					25	14	3	0	0	0	0.03519	1	1404	1404		30.318	8.6154	1	200000			65477	8782	46149	46215	70677	70677					-0.08405096213778052
RAQFNGKGSY	10	Unmodified	_RAQFNGKGSY_					0	0	0		ENSG00000116863|ENST00000373178|ADPRS	ENSG00000116863|ENST00000373178|ADPRS	ENSG00000116863|ENST00000373178|ADPRS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2975463867188	2	564.283254	1126.55196	1.4912	0.00084146	1.1803	0.00066602	2.6715	0.0015075	564.2836627259718	17.036	0.39036	16.882	16.566	16.957	-0.15403					13	7	2	0	0	0	0.03519	1	108	108		23.523	9.3856	1	21034			65478	3586	46150	46216	70678	70678					-0.006258109563077596
RAQFQLQS	8	Unmodified	_RAQFQLQS_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.263427734375	2	489.261791	976.509028	3.3431	0.0016356	0.15589	7.6273E-05	3.4989	0.0017119	489.2617385935617	18.641	1.6967	18.704	18.222	19.918	0.063307					66	34	3	0	0	0	1.0106	1	263	263		35.618	1.4457	1	181340	+		65479	21880	46151	46217	70679	70679					0.019834189862422136
RAQGERAAL	9	Unmodified	_RAQGERAAL_					0	0	0		ENST00000381278.3_1_22:43089799-43091637:-|nuORF	ENST00000381278.3_1_22:43089799-43091637:-|nuORF	ENST00000381278.3_1_22:43089799-43091637:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.27252197265625	2	486.27269	970.530826	-0.99686	-0.00048475	1.0086	0.00049046	0.011754	5.7155E-06	486.2731145576464	21.219	0.54145	21.219	20.85	21.392	0					32	10	4	0	0	0	0.48817	2	625	625;636		60.118	5.3419	1	1033700			65480	13335	46152	46218	70680;70681	70680					0.04438223734780422
RAQGLMPVI	9	Unmodified	_RAQGLMPVI_					0	0	0		AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|1|1|sense	AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|1|1|sense	AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|1|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.78802490234375	2	492.786587	983.558621	-0.90068	-0.00044384	4.0638	0.0020026	3.1631	0.0015588	492.78850091201184	20.633	0.82328	20.633	20.372	21.195	0					41	16	4	0	0	0	0.75282	1	564	564		42.474	8.9589	1	634500			65481	77	46153	46219	70682	70682					0.06618410670671437
RAQGSRLVP	9	Unmodified	_RAQGSRLVP_					0	0	0		ENST00000459957.5_1_2:74710474-74717307:+|nuORF	ENST00000459957.5_1_2:74710474-74717307:+|nuORF	ENST00000459957.5_1_2:74710474-74717307:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2618103027344	2	492.290882	982.567212	-0.078799	-3.8792E-05	2.9331	0.0014439	2.8543	0.0014051	492.2922557645195	71.072	0.87912	71.083	70.812	71.691	0.010735					58	22	4	0	0	0	0.023817	1	8508	8508		60.972	2.19	1	2828400			65482	14645	46154	46220	70683	70683					0.07523100631510715
RAQKLTSRA	9	Unmodified	_RAQKLTSRA_					0	0	0		ENST00000378024.8_2_11:62287553-62287670:-|nuORF	ENST00000378024.8_2_11:62287553-62287670:-|nuORF	ENST00000378024.8_2_11:62287553-62287670:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2955322265625	2	515.809439	1029.60433	0.17156	8.8491E-05	2.1909	0.0011301	2.3624	0.0012186	515.8105391841193	37.045	0.61474	36.852	36.537	37.152	-0.193					27	15	2	0	0	0	0.024436	1	2958	2958		10.866	0	1	291950			65483	13221	46155	46221	70684	70684					0.09070772177278741
RAQLLPNVKVN	11	Unmodified	_RAQLLPNVKVN_					0	0	0			REV__ENST00000560298.1_1_15:57024815-57024902:-|nuORF	REV__ENST00000560298.1_1_15:57024815-57024902:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.9219970703125	3	417.922578	1250.7459	-0.52093	-0.00021771	-0.41589	-0.00017381	-0.93682	-0.00039152	417.92234284663687	104.49	1.049	104.36	104.02	105.07	-0.12927					86	34	4	0	0	0	1.0592	1	13033	13033		22.562	1.7244	1	1360400	+		65484	35142	46156	46222	70685	70685					0.1305614547973164
RAQLLVNPKKI	11	Unmodified	_RAQLLVNPKKI_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.26654052734375	3	427.278473	1278.81359	0.31847	0.00013608	-2.1997	-0.00093989	-1.8812	-0.00080382	427.6107834622139	42.532	0.64204	42.558	42.255	42.897	0.026012					27	17	3	0	0	0	0.024792	1	3880	3880		13.508	2.5097	1	252880			65485	3501	46157	46223	70686	70686					0.18533595410531234
RAQLRKKP	8	Unmodified	_RAQLRKKP_					0	0	0		MLLT1|p.K352Rfs*86|1|0.14|ENSG00000130382|chr19:6222176-6222176|T/-|frameshift_variant;ENSG00000130382|ENST00000252674|MLLT1	MLLT1|p.K352Rfs*86|1|0.14|ENSG00000130382|chr19:6222176-6222176|T/-|frameshift_variant	MLLT1|p.K352Rfs*86|1|0.14|ENSG00000130382|chr19:6222176-6222176|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.8031005859375	2	498.824892	995.635232	-0.15709	-7.8362E-05	-2.2173	-0.001106	-2.3744	-0.0011844	498.824279501804	52.78	0.24164	52.652	52.511	52.753	-0.12705					8	5	2	0	0	0	0.027866	1	5512	5512		12.207	0.69583	1	80013			65486	4416	46158	46224	70687	70687					0.1372397028217165
RAQLSTQTK	9	Unmodified	_RAQLSTQTK_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7802734375	2	516.793455	1031.57236	-1.2134	-0.00062706	-0.24173	-0.00012493	-1.4551	-0.00075199	516.7929148567006	44.678	0.4745	44.529	44.256	44.73	-0.1488					22	13	2	0	0	0	0.024319	1	4271	4271		66.429	16.988	1	306340	+		65487	20011	46159	46225	70688	70688					0.05783359703445967
RAQQESAQ	8	Unmodified	_RAQQESAQ_					0	0	0		ENST00000553338.1_1_14:76452564-76488738:+|nuORF;ENST00000555677.5_1_14:76368510-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43;ENSG00000119650|ENST00000314067|IFT43	REV__ENSG00000101004|ENST00000278886|NINL;ENST00000553338.1_1_14:76452564-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43	REV__ENSG00000101004|ENST00000278886|NINL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2252502441406	2	459.225405	916.436257	-0.30652	-0.00014076	-0.2607	-0.00011972	-0.56723	-0.00026049	459.225414960314	26.111	2.5464	25.943	25.502	28.048	-0.16816					199	64	5	0	0	0	0.89627	1	1311	1311		51.335	4.8787	1	47552000			65488	21176;16636;3750	46160	46226	70689	70689					-0.025303348071929577
RAQQESAQ	8	Unmodified	_RAQQESAQ_					0	0	0		ENST00000553338.1_1_14:76452564-76488738:+|nuORF;ENST00000555677.5_1_14:76368510-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-3|IFT43;ENST00000554026.5_1_14:76452129-76542971:+|nuORF;nc|ENSG00000119650|Q96FT9-4|IFT43;ENST00000555305.5_1_14:76452129-76548711:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43;ENSG00000119650|ENST00000314067|IFT43	REV__ENSG00000101004|ENST00000278886|NINL;ENST00000553338.1_1_14:76452564-76488738:+|nuORF;nc|ENSG00000119650|Q96FT9-2|IFT43	REV__ENSG00000101004|ENST00000278886|NINL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.225405	916.436257	-0.90546	-0.00041581	0.23184	0.00010647	-0.67362	-0.00030934	459.2256379392626	26.131	2.5714	25.967	25.457	28.029	-0.16331					204	65	5	0	0	0	0.89627	2	1288	1288;1336		51.335	0.14276	1	50655000			65489	21176;16636;3750	46160	46226	70690;70691	70690					-0.025303348071929577
RAQRALQQRR	10	Unmodified	_RAQRALQQRR_					0	0	0			REV__ENSG00000196917|ENST00000432564|HCAR1	REV__ENSG00000196917|ENST00000432564|HCAR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8826904296875	2	641.881793	1281.74903	-0.57437	-0.00036868	1.4395	0.000924	0.86514	0.00055532	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.1307	1	11655	11655		26.693	0.62953	1	1351900	+		65490	28238	46161	46227	70692	70692					0.11942833377088391
RAQRPPPLR	9	Unmodified	_RAQRPPPLR_					0	0	0			REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.811279296875	2	545.833249	1089.65194	-0.46084	-0.00025154	2.5998	0.001419	2.1389	0.0011675	545.8345128347146	46.593	0.55127	46.593	46.378	46.93	0					21	14	2	0	0	0	0.024323	1	4621	4621		53.351	14.545	1	262400	+		65491	29516	46162	46228	70693	70693					0.11070471168113727
RAQRVAHP	8	Unmodified	_RAQRVAHP_					0	0	0		ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	ENST00000402192.6_1_11:47296295-47296511:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.30499267578125	2	467.770117	933.525681	0.1124	5.2577E-05	2.8087	0.0013138	2.9211	0.0013664	467.77098109339505	53.314	0.48622	53.187	52.951	53.437	-0.12705					19	12	2	0	0	0	0.027866	1	5561	5561		37.028	0	1	285150			65492	13681	46163	46229	70694	70694					0.05625964662840488
RAQSEIHLQ	9	Unmodified	_RAQSEIHLQ_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1;SIGLEC1|p.I319Sfs*12|1|0.19|ENSG00000088827|chr20:3703844-3703844|G/-|frameshift_variant	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.289794921875	2	541.291079	1080.56761	2.7414	0.0014839	-3.8919	-0.0021066	-1.1505	-0.00062274	541.2888599175731	18.014	0.88368	18.014	17.498	18.382	0					28	17	2	0	0	0	0.82115	1	241	241		37.812	4.2959	1	288890			65493	1878	46164	46230	70695	70695					0.030544755607252227
RAQSHRAE	8	Unmodified	_RAQSHRAE_					0	0	0		nc|ENSG00000124074|Q9H0I2-2|ENKD1;ENSG00000124074|ENST00000243878|ENKD1	nc|ENSG00000124074|Q9H0I2-2|ENKD1	nc|ENSG00000124074|Q9H0I2-2|ENKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3004455566406	2	477.746839	953.479125	-0.1888	-9.0197E-05	3.8873	0.0018571	3.6985	0.0017669	477.74798878674915	37.502	0.9266	37.439	36.941	37.868	-0.063389					76	25	5	0	0	0	0.027866	1	3085	3085		74.255	31.391	1	1211200			65494	4007	46165	46231	70696	70696					0.00052480040892533
RARAAVVFLL	10	Unmodified	_RARAAVVFLL_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.8091430664062	2	558.356025	1114.6975	-0.59741	-0.00033357	0.48365	0.00027005	-0.11376	-6.3519E-05	558.3561105225142	51.958	0.70296	52.05	51.823	52.526	0.091938					31	17	3	0	0	0	0.03519	1	5508	5508		37.159	0	1	241210	+		65495	36501	46166	46232	70697	70697					0.14473696630511768
RARAEVCATS	10	Unmodified	_RARAEVCATS_					0	0	0			REV__NRG2|p.P550T|1|0.21|ENSG00000158458|chr5:139851728-139851728|G/T|missense_variant	REV__NRG2|p.P550T|1|0.21|ENSG00000158458|chr5:139851728-139851728|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3018188476562	2	532.26929	1062.52403	-0.27221	-0.00014489	2.9464	0.0015683	2.6742	0.0014234	532.2707097368938	43.077	0.5679	42.964	42.614	43.182	-0.11253					22	14	2	0	0	0	0.03519	1	3925	3925		36.447	8.5645	1	167010	+		65496	37295	46167	46233	70698	70698					-0.004734572080906219
RARALGRG	8	Unmodified	_RARALGRG_					0	0	0		ENST00000592414.1_1_19:3055403-3056603:-|nuORF	ENST00000592414.1_1_19:3055403-3056603:-|nuORF	ENST00000592414.1_1_19:3055403-3056603:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2251892089844	2	428.764835	855.515117	0.52118	0.00022346	3.0942	0.0013267	3.6154	0.0015502	428.7660122434064	25.646	0.33314	25.727	25.459	25.792	0.08009					14	7	2	0	0	0	0.027866	1	1188	1188		40.573	16.37	1	68562			65497	17371	46168	46234	70699	70699					0.08157982008413
RARANRGIL	9	Unmodified	_RARANRGIL_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;ENST00000540945.1_1_11:64001297-64001653:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8155517578125	2	513.817599	1025.62064	-0.88781	-0.00045617	-3.5251	-0.0018113	-4.413	-0.0022675	513.8158316785673	44.808	1.3324	44.808	44.485	45.818	0					110	38	5	0	0	0	0.83071	2	4315	4315;4327		37.159	6.6555	1	21263000			65498	3010	46169	46235	70700;70701	70700					0.10885898134029048
RARANRGIL	9	Unmodified	_RARANRGIL_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;ENST00000540945.1_1_11:64001297-64001653:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.814697265625	2	513.817599	1025.62064	-0.9202	-0.00047282	-3.4839	-0.0017901	-4.4041	-0.0022629	513.8158727691498	44.962	1.1631	44.814	44.523	45.686	-0.1488					95	33	4	0	0	0	0.55828	2	4345	4289;4345		55.504	9.5523	1	23522000			65499	3010	46169	46235	70702;70703	70703					0.10885898134029048
RARANRGIL	9	Unmodified	_RARANRGIL_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;ENST00000540945.1_1_11:64001297-64001653:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8156127929688	2	513.817599	1025.62064	-0.60319	-0.00030993	-3.7003	-0.0019013	-4.3034	-0.0022112	513.8157341182409	44.832	1.1662	44.869	44.578	45.744	0.036903					92	33	5	0	0	0	0.70186	2	4264	4264;4278		45.952	7.1458	1	19795000			65500	3010	46169	46235	70704;70705	70704					0.10885898134029048
RARARWPL	8	Unmodified	_RARARWPL_					0	0	0		ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.30810546875	2	513.30941	1024.60427	-0.10532	-5.4059E-05	-1.6036	-0.00082316	-1.7089	-0.00087722	513.3085301451987	54.584	1.0748	54.434	54.191	55.266	-0.15036					91	30	5	0	0	0	0.43637	2	5944	5944;5969		92.191	12.251	1	8060200			65501	14919	46170	46236	70706;70707	70706					0.09294816967940278
RARARWPL	8	Unmodified	_RARARWPL_					0	0	0		ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	ENST00000469908.5_2_16:2390982-2391318:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3085327148438	2	513.30941	1024.60427	0.33058	0.00016969	-2.243	-0.0011514	-1.9124	-0.00098168	513.3082328360034	54.345	1.107	54.443	54.15	55.257	0.098015					75	31	3	0	0	0	0.46709	1	5869	5869		88.643	0.94643	1	9063000			65502	14919	46170	46236	70708	70708					0.09294816967940278
RARAVPPPRAH	11	Unmodified	_RARAVPPPRAH_					0	0	0			REV__nc|ENSG00000162981|Q96KN4-2|LRATD1	REV__nc|ENSG00000162981|Q96KN4-2|LRATD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.54266357421875	3	409.910895	1226.71086	0.60432	0.00024772	1.901	0.00077925	2.5053	0.001027	409.9115524812641	21.838	0.47762	21.661	21.397	21.875	-0.17721					20	9	3	0	0	0	0.024727	1	727	727		8.0344	0	1	60184	+		65503	36850	46171	46237	70709	70709					0.10656947462439348
RARCASPA	8	Unmodified	_RARCASPA_					0	0	0			REV__ENST00000360271.3_1_9:139972605-139973049:+|nuORF	REV__ENST00000360271.3_1_9:139972605-139973049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2484130859375	2	416.216329	830.418105	-0.78849	-0.00032818	-4.1754	-0.0017378	-4.9638	-0.002066	416.2145869197235	35.711	0.63078	35.668	35.366	35.996	-0.042454					28	16	2	0	0	0	0.027866	1	2788	2788		40.573	15.122	1	339860	+		65504	30902	46172	46238	70710	70710					-0.003887482629011174
RARCVFTAGD	10	Unmodified	_RARCVFTAGD_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.33154296875	2	548.271832	1094.52911	-0.29868	-0.00016376	3.9671	0.0021751	3.6684	0.0020113	548.2730775085952	74.747	1.2425	74.488	73.78	75.023	-0.25887					66	29	3	0	0	0	0.03519	1	9042	9042		47.657	17.154	1	369060	+		65505	22888	46173	46239	70711	70711					-0.014371533454550445
RARDEEGLL	9	Unmodified	_RARDEEGLL_					0	0	0		nc|ENSG00000251369|Q7Z398-2|ZNF550;ENSG00000251369|ENST00000699333|ZNF550	nc|ENSG00000251369|Q7Z398-2|ZNF550	nc|ENSG00000251369|Q7Z398-2|ZNF550	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2779541015625	2	529.783087	1057.55162	-1.0853	-0.00057498	-2.6275	-0.001392	-3.7128	-0.001967	529.7813695562327	80.53	0.73341	80.53	80.205	80.939	0					25	17	2	0	0	0	0.024292	1	10013	10013		40.778	15.328	1	331580			65506	10853	46174	46240	70712	70712					0.025147693238068314
RAREEGIRLF	10	Unmodified	_RAREEGIRLF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.23870849609375	3	416.238678	1245.6942	-0.25205	-0.00010491	-0.3625	-0.00015089	-0.61455	-0.0002558	416.238440393063	41.669	1.835	41.546	41.189	43.024	-0.12299					150	48	6	0	0	0	0.67616	7	3724	3677;3684;3688;3700;3712;3724;3737		68.846	22.389	1	27806000			65507	5540	46175	46241	70713;70714;70715;70716;70717;70718;70719	70718					0.081184017858277
RAREEGIRLF	10	Unmodified	_RAREEGIRLF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.23883056640625	3	416.238678	1245.6942	-0.43035	-0.00017913	-0.27363	-0.00011389	-0.70398	-0.00029302	416.23845002244616	41.89	1.6871	41.658	41.271	42.959	-0.23186					149	44	5	0	0	0	0.55987	4	3736	3699;3711;3723;3736		81.525	34.297	1	27503000			65508	5540	46175	46241	70720;70721;70722;70723	70723					0.081184017858277
RAREEGIRLF	10	Unmodified	_RAREEGIRLF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.2397766113281	3	416.238678	1245.6942	0.13389	5.573E-05	-0.98179	-0.00040866	-0.8479	-0.00035293	416.23811644824536	41.923	2.0261	41.693	41.313	43.339	-0.23029					161	54	6	0	0	0	0.62511	3	3762	3717;3742;3762		74.165	25.563	1	28528000			65509	5540	46175	46241	70724;70725;70726	70726					0.081184017858277
RARFSRDLLL	10	Unmodified	_RARFSRDLLL_					0	0	0			REV__ENSG00000170128|ENST00000304244|GPR25	REV__ENSG00000170128|ENST00000304244|GPR25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.23046875	3	416.250806	1245.73059	-0.5578	-0.00023219	-1.7778	-0.00074	-2.3356	-0.00097219	416.2501763836333	40.307	0.42336	40.077	39.697	40.12	-0.23021					20	10	3	0	0	0	0.03519	1	3408	3408		20.03	0	1	381140	+		65510	26437	46176	46242	70727	70727					0.11755278682562675
RARGAAAR	8	Unmodified	_RARGAAAR_					0	0	0		ENST00000496613.5_1_7:140305582-140340342:-|nuORF;ENST00000275884.10_1_7:140302318-140340420:-|nuORF;ENST00000475837.1_1_7:140287571-140340558:-|nuORF	ENST00000496613.5_1_7:140305582-140340342:-|nuORF	ENST00000496613.5_1_7:140305582-140340342:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.2587890625	2	414.749185	827.483817	-0.33827	-0.0001403	-3.0148	-0.0012504	-3.3531	-0.0013907	414.74718063305323	23.672	0.21492	23.611	23.47	23.685	-0.06086					6	4	2	0	0	0	0.027866	1	935	935		7.1934	0	1	21431			65511	11692	46177	46243	70728	70728					0.06317408974314276
RARGAAAR	8	Unmodified	_RARGAAAR_					0	0	0		ENST00000496613.5_1_7:140305582-140340342:-|nuORF;ENST00000275884.10_1_7:140302318-140340420:-|nuORF;ENST00000475837.1_1_7:140287571-140340558:-|nuORF	ENST00000496613.5_1_7:140305582-140340342:-|nuORF	ENST00000496613.5_1_7:140305582-140340342:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.749185	827.483817	2.1165	0.00087781	-0.25229	-0.00010464	1.8642	0.00077317	414.74944855728444	23.841	0.44442	23.653	23.531	23.976	-0.18839	0.020961	0.0011865	NaN	7.1934	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20662			65512	11692	46177	46243							0.06317408974314276
RARGHTAL	8	Unmodified	_RARGHTAL_					0	0	0		ENST00000515008.1_1_5:138283142-138289110:-|nuORF	ENST00000515008.1_1_5:138283142-138289110:-|nuORF	ENST00000515008.1_1_5:138283142-138289110:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.25653076171875	2	441.256843	880.499132	3.5602	0.0015709	-3.0279	-0.0013361	0.53224	0.00023486	441.25531884334663	17.869	0.43971	17.869	17.697	18.136	0					17	8	3	0	0	0	1.0574	1	225	225		19.36	0	1	103410			65513	15891	46178	46244	70729	70729					0.054102757714872496
RARGIKPSPAP	11	Unmodified	_RARGIKPSPAP_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8;ENST00000546603.5_1_12:39047686-39073432:-|nuORF;nc|ENSG00000139117|Q86YQ8-2|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3455200195312	2	575.346189	1148.67783	0.52304	0.00030093	-1.7979	-0.0010344	-1.2748	-0.00073347	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	1.0292	1	12328	12328		30.318	4.2543	1	4068000			65514	5298	46179	46245	70730	70730					0.10943320619730912
RARGQPRSW	9	Unmodified	_RARGQPRSW_					0	0	0		ENST00000313766.5_7:193007-193082:+|nuORF	ENST00000313766.5_7:193007-193082:+|nuORF	ENST00000313766.5_7:193007-193082:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.3046875	2	557.304855	1112.59516	-1.3709	-0.00076401	1.1486	0.00064014	-0.22227	-0.00012387	557.305303009121	21.207	1.1686	20.994	20.723	21.892	-0.2128					54	23	4	0	0	0	0.56934	1	611	611		54.776	13.998	1	484290			65515	12106	46180	46246	70731	70731					0.04336423611584905
RARGQPRSW	9	Unmodified	_RARGQPRSW_					0	0	0		ENST00000313766.5_7:193007-193082:+|nuORF	ENST00000313766.5_7:193007-193082:+|nuORF	ENST00000313766.5_7:193007-193082:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	557.304855	1112.59516	0.2355	0.00013125	-0.50822	-0.00028323	-0.27272	-0.00015199	557.3044354908918	21.195	0.92703	21.004	20.735	21.662	-0.19072	0.049598	-0.00037817	NaN	54.776	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451370			65516	12106	46180	46246							0.04336423611584905
RARGRPSE	8	Unmodified	_RARGRPSE_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7948913574219	2	464.757207	927.499861	-0.96958	-0.00045062	-3.0265	-0.0014066	-3.9961	-0.0018572	464.7557376912946	34.285	0.55463	34.11	33.859	34.413	-0.17557					24	13	2	0	0	0	0.027866	1	2471	2471		21.96	0	1	1179300			65517	6175	46181	46247	70732	70732					0.03321070420554406
RARHQAVI	8	Unmodified	_RARHQAVI_					0	0	0			REV__CHD1L|p.D807A|1|0.18|ENSG00000131778|chr1:147293636-147293636|A/C|missense_variant	REV__CHD1L|p.D807A|1|0.18|ENSG00000131778|chr1:147293636-147293636|A/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.7873840332031	2	475.785767	949.556982	0.36201	0.00017224	2.3527	0.0011194	2.7148	0.0012916	475.7868325295316	85.757	1.4476	85.619	84.908	86.356	-0.13752					87	33	4	0	0	0	1.0574	1	10430	10430		26.796	1.3459	1	4488600	+		65518	19304	46182	46248	70733	70733					0.08018537696943895
RARHSVGI	8	Unmodified	_RARHSVGI_					0	0	0			REV__chr3:141875096-141903620|302|13.78|0.22|5.95|+|0|None,ATP1B3|1	REV__chr3:141875096-141903620|302|13.78|0.22|5.95|+|0|None,ATP1B3|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.76123046875	2	448.264668	894.514782	-0.37817	-0.00016952	-2.5484	-0.0011424	-2.9266	-0.0013119	448.2634869118321	45.29	0.54489	45.141	44.938	45.483	-0.1488					25	15	2	0	0	0	0.027866	1	4372	4372		19.36	1.0356	1	875150	+		65519	19433	46183	46249	70734	70734					0.06330562288576402
RARIRNLGSEV	11	Unmodified	_RARIRNLGSEV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.1832580566406	3	424.249465	1269.72657	-0.0026361	-1.1184E-06	3.5039	0.0014865	3.5012	0.0014854	424.58620197221575	34.425	0.20192	34.218	34.082	34.284	-0.20696					6	4	2	0	0	0	0.024727	1	2541	2541		17.833	6.1972	1	27480			65520	732	46184	46250	70735	70735					0.10249189188857599
RARISIDP	8	Unmodified	_RARISIDP_					0	0	0			REV__ENSG00000164500|ENST00000297001|SPATA48	REV__ENSG00000164500|ENST00000297001|SPATA48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.27679443359375	2	464.272158	926.529764	0.06054	2.8107E-05	-4.0656	-0.0018875	-4.005	-0.0018594	464.2702522700323	57.139	0.82988	56.975	56.641	57.471	-0.16431					29	22	2	0	0	0	0.027866	1	6329	6329		37.159	17.162	1	407550	+		65521	25762	46185	46251	70736	70736					0.06356009365902082
RARKPQPIL	9	Unmodified	_RARKPQPIL_					0	0	0			REV__ENST00000435096.1_1_7:139044701-139059229:+|nuORF	REV__ENST00000435096.1_1_7:139044701-139059229:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8162231445312	2	539.845825	1077.6771	-0.67032	-0.00036187	3.2592	0.0017594	2.5888	0.0013976	539.8489243308953	45.383	0.44008	45.284	45.154	45.594	-0.099445					17	12	2	0	0	0	0.024541	1	4330	4330		17.365	0	1	196730	+		65522	32437	46186	46252	70737	70737					0.14136525970684488
RARLFVPL	8	Unmodified	_RARLFVPL_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2815246582031	2	486.311087	970.60762	-0.73736	-0.00035859	3.2903	0.0016001	2.553	0.0012415	486.3132682591629	89.585	1.3228	89.585	89.523	90.845	0					43	31	2	0	0	0	0.027866	1	11336	11336		35.201	0	1	162070	+		65523	25337	46187	46253	70738	70738					0.12114067021946084
RARLLLVP	8	Unmodified	_RARLLLVP_					0	0	0			REV__nc|ENSG00000173349|Q587I9|SFT2D3	REV__nc|ENSG00000173349|Q587I9|SFT2D3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.284912109375	2	469.318912	936.62327	0.8546	0.00040108	0.21271	9.9827E-05	1.0673	0.00050091	469.31911025482157	43.351	0.72858	43.381	43.153	43.882	0.030827					34	19	3	0	0	0	0.027866	1	4015	4015		21.702	7.927	1	467670	+		65524	36946	46188	46254	70739	70739					0.15242353538997122
RARLLTQP	8	Unmodified	_RARLLTQP_					0	0	0			REV__ENST00000439741.3_2_1:149908572-149908737:-|nuORF	REV__ENST00000439741.3_2_1:149908572-149908737:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26953125	2	477.795801	953.577048	-0.084674	-4.0457E-05	1.5533	0.00074215	1.4686	0.00070169	477.79575379635577	35.554	0.54319	35.554	35.306	35.849	0					25	13	3	0	0	0	0.027866	1	2741	2741		38.806	25.847	1	103940	+		65525	32513	46189	46255	70740	70740					0.09840288636894456
RARLPVTTW	9	Unmodified	_RARLPVTTW_					0	0	0		nc|ENSG00000128284|O95236|APOL3;nc|ENSG00000128284|O95236-3|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.322265625	2	550.322183	1098.62981	0.12513	6.8863E-05	-0.25877	-0.00014241	-0.13364	-7.3543E-05	550.3218974289706	47.281	0.69364	47.012	46.695	47.389	-0.26939					49	18	3	0	0	0	0.28753	1	4621	4621		77.318	22.541	1	2605200			65526	18254	46190	46256	70741	70741					0.08444246699696123
RARLPVTTW	9	Unmodified	_RARLPVTTW_					0	0	0		nc|ENSG00000128284|O95236|APOL3;nc|ENSG00000128284|O95236-3|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.3218994140625	2	550.322183	1098.62981	-0.35236	-0.00019391	-0.03435	-1.8904E-05	-0.38671	-0.00021282	550.322036364401	47.064	0.65501	46.87	46.577	47.232	-0.19387					45	17	3	0	0	0	0.091713	1	4585	4585		113.41	41.534	1	2767600			65527	18254	46190	46256	70742	70742					0.08444246699696123
RARLQGGAV	9	Unmodified	_RARLQGGAV_					0	0	0			REV__ENST00000528220.1_1_11:65487915-65487984:-|nuORF	REV__ENST00000528220.1_1_11:65487915-65487984:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.77752685546875	2	464.277775	926.540997	0.23403	0.00010866	-2.1417	-0.00099435	-1.9077	-0.0008857	464.27716576533726	49.217	0.82956	49.217	48.864	49.694	0					55	22	4	0	0	0	0.52323	1	5093	5093		57.811	11.045	1	5579500	+		65528	34492	46191	46257	70743	70743					0.07478831460048241
RARLRAGA	8	Unmodified	_RARLRAGA_					0	0	0			REV__ENST00000380502.7_2_9:19096755-19102608:-|nuORF	REV__ENST00000380502.7_2_9:19096755-19102608:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.7559509277344	2	435.77266	869.530767	0.23537	0.00010257	-4.2176	-0.0018379	-3.9822	-0.0017353	435.7728085026627	63.569	0.54133	63.318	63.048	63.59	-0.25141					23	14	2	0	0	0	0.027866	1	7446	7446		18.324	0	1	164520	+		65529	31480	46192	46258	70744	70744					0.09078268525468047
RARLRAGA	8	Unmodified	_RARLRAGA_					0	0	0			REV__ENST00000380502.7_2_9:19096755-19102608:-|nuORF	REV__ENST00000380502.7_2_9:19096755-19102608:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.7559509277344	2	435.77266	869.530767	0.27549	0.00012005	-3.6792	-0.0016033	-3.4037	-0.0014832	435.77196906077603	63.86	0.39437	63.609	63.518	63.912	-0.25141					14	10	2	0	0	0	0.027866	1	7446	7446		18.324	0	1	156290	+		65530	31480	46192	46258	70745	70745					0.09078268525468047
RARLSGIP	8	Unmodified	_RARLSGIP_					0	0	0			REV__ENST00000469897.1_1_7:99051318-99054120:+|nuORF	REV__ENST00000469897.1_1_7:99051318-99054120:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2409362792969	2	435.269419	868.524284	0.0042115	1.8331E-06	-0.95455	-0.00041549	-0.95034	-0.00041365	435.26877809794394	31.837	0.76344	31.906	31.406	32.169	0.068962					25	18	2	0	0	0	0.027866	1	2144	2144		12.207	0	1	120270	+		65531	33139	46193	46259	70746	70746					0.08476330574092117
RARPATDSF	9	Unmodified	_RARPATDSF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.76458740234375	2	510.764697	1019.51484	-0.88574	-0.0004524	0.095637	4.8848E-05	-0.7901	-0.00040356	510.76480444062497	25.678	1.3301	25.678	25.285	26.615	0					83	31	5	0	0	0	0.31037	1	1259	1259		74.255	14.137	1	7841600			65532	1256	46194	46260	70747	70747					0.0058651749790215035
RARPATDSF	9	Unmodified	_RARPATDSF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7644348144531	2	510.764697	1019.51484	-0.73319	-0.00037449	-0.083014	-4.2401E-05	-0.8162	-0.00041689	510.76470702365367	25.738	1.2452	25.703	25.313	26.558	-0.034395					75	29	5	0	0	0	0.50848	2	1237	1226;1237		58.782	7.5893	1	7734100			65533	1256	46194	46260	70748;70749	70749					0.0058651749790215035
RARPATDSF	9	Unmodified	_RARPATDSF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7649230957031	2	510.764697	1019.51484	-0.0066151	-3.3788E-06	-0.80571	-0.00041153	-0.81232	-0.0004149	510.764350155441	25.563	1.4045	25.644	25.05	26.455	0.080088					70	33	4	0	0	0	0.4752	1	1152	1152		60.972	2.19	1	7656700			65534	1256	46194	46260	70750	70750					0.0058651749790215035
RARPATDSF	9	Unmodified	_RARPATDSF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.764404296875	2	510.764697	1019.51484	-0.79452	-0.00040581	0.25892	0.00013225	-0.5356	-0.00027357	510.76477352465804	25.733	0.53351	25.561	25.324	25.857	-0.17151					36	12	4	0	0	0	0.50848	1	1218	1218		58.782	11.125	1	1518300			65535	1256	46194	46260	70751	70751					0.0058651749790215035
RARPATDSF	9	Unmodified	_RARPATDSF_					0	0	0		ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	ENSG00000063046|ENST00000262056|EIF4B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	510.764697	1019.51484	-0.36984	-0.0001889	0.037533	1.9171E-05	-0.3323	-0.00016973	510.76462508879587	25.704	0.62082	25.533	25.247	25.867	-0.17078	-0.1008	0.00015305	NaN	74.255	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468100			65536	1256	46194	46260							0.0058651749790215035
RARQAQSRA	9	Unmodified	_RARQAQSRA_					0	0	0		ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	ENSG00000089847|ENST00000318934|ANKRD24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2581787109375	2	522.294488	1042.57442	-1.0161	-0.00053072	3.5388	0.0018483	2.5227	0.0013176	522.2962318987337	24.176	0.65466	24.176	23.908	24.563	0					15	9	2	0	0	0	0.024523	1	1019	1019		10.265	0	1	113830			65537	1916	46195	46261	70752	70752					0.054838332319377514
RARRGLANL	9	Unmodified	_RARRGLANL_					0	0	0		ENST00000467169.1_1_13:114506155-114514873:+|nuORF	ENST00000467169.1_1_13:114506155-114514873:+|nuORF	ENST00000467169.1_1_13:114506155-114514873:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2835693359375	2	513.817599	1025.62064	-1.1322	-0.00058173	0.65862	0.00033841	-0.47355	-0.00024332	513.8169566684983	62.045	0.28461	62.045	61.832	62.117	0					10	7	2	0	0	0	0.024294	1	7219	7219		45.952	0	1	108370			65538	14831	46196	46262	70753	70753					0.10885898134029048
RARRIPKL	8	Unmodified	_RARRIPKL_					0	0	0		nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B;chr11:8711231-8715603|145|22.92|0.8|4.85|-|0|DENND2B,DENND2B|1;ENST00000530559.5_1_11:8728764-8737359:-|nuORF	nc|ENSG00000166444|P78524-3|DENND2B	nc|ENSG00000166444|P78524-3|DENND2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7975769042969	2	505.34071	1008.66687	-0.83039	-0.00041963	-2.1914	-0.0011074	-3.0218	-0.001527	505.3411680024153	80.666	1.1359	80.69	80.234	81.37	0.023911					66	27	4	0	0	0	0.027866	1	9980	9980		38.806	13.356	1	752480			65539	7562	46197	46263	70754	70754					0.16287963036108977
RARRKAAT	8	Unmodified	_RARRKAAT_					0	0	0		ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2976379394531	2	465.291217	928.567881	0.12322	5.7334E-05	3.0372	0.0014132	3.1604	0.0014705	465.2924749983511	61.769	0.35494	61.838	61.704	62.059	0.069321					24	9	3	0	0	0	0.027866	1	7065	7065		50.025	4.0726	1	1725800			65540	3532	46198	46264	70755	70755					0.10073940071208654
RARRRSLL	8	Unmodified	_RARRRSLL_					0	0	0		ENST00000527967.5_1_11:125932492-125932705:-|nuORF	ENST00000527967.5_1_11:125932492-125932705:-|nuORF	ENST00000527967.5_1_11:125932492-125932705:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.3342895507812	2	514.333416	1026.65228	-1.4588	-0.00075033	3.6402	0.0018723	2.1814	0.001122	514.3351356005475	49.568	0.85734	49.643	49.316	50.173	0.074196					60	23	4	0	0	0	0.74904	1	5065	5065		63.306	1.1989	1	2793200			65541	16168	46199	46265	70756	70756					0.14001890887993795
RARSCLTYL	9	Carbamidomethyl (C)	_RARSC(Carbamidomethyl (C))LTYL_	RARSC(1)LTYL		RARSC(63)LTYL		0	1	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.302734375	2	570.303133	1138.59171	0.043408	2.4756E-05	-0.50687	-0.00028907	-0.46346	-0.00026431	570.3027282595444	99.263	1.6227	99.095	98.24	99.863	-0.16862					123	39	5	0	0	0	0.43973	1	12318	12318		63.306	11.971	1	1337000			65542	9993	46200	46266	70757	70757	138				0.027959927226902437
RARSFRPCS	9	Unmodified	_RARSFRPCS_					0	0	0		ENST00000407835.5_1_22:19467711-19470234:+|nuORF	ENST00000407835.5_1_22:19467711-19470234:+|nuORF	ENST00000407835.5_1_22:19467711-19470234:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.7642822265625	2	540.279992	1078.54543	-0.17789	-9.6113E-05	-0.10467	-5.6552E-05	-0.28257	-0.00015266	540.7823153428089	50.475	0.26408	50.195	50.031	50.295	-0.27977					13	6	3	0	0	0	0.024477	1	5098	5098		20.947	0	1	195890			65543	13753	46201	46267	70758	70758					0.009299726112885764
RARTAAGYGT	10	Unmodified	_RARTAAGYGT_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000044524|P29320-2|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2711791992188	2	512.270147	1022.52574	0.51992	0.00026634	1.1858	0.00060744	1.7057	0.00087378	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	1.0616	3	13680	13641;13649;13680		37.812	1.0262	1	6752000			65544	1093	46202	46268	70759;70760;70761	70761					0.015379198721802823
RARTAAGYGT	10	Unmodified	_RARTAAGYGT_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000044524|P29320-2|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2708129882812	2	512.270147	1022.52574	-0.053609	-2.7462E-05	1.4432	0.0007393	1.3896	0.00071184	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	1.0992	1	13276	13276		32.812	1.2826	1	4944800			65545	1093	46202	46268	70762	70762					0.015379198721802823
RARTAAGYGT	10	Unmodified	_RARTAAGYGT_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000044524|P29320-2|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2709350585938	2	512.270147	1022.52574	0.53902	0.00027612	0.90867	0.00046548	1.4477	0.00074161	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	1.0719	1	13257	13257		36.447	2.5251	1	5030900			65546	1093	46202	46268	70763	70763					0.015379198721802823
RARTIYERF	9	Unmodified	_RARTIYERF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.5599365234375	3	404.55964	1210.65709	0.32353	0.00013089	-0.42937	-0.00017371	-0.10584	-4.2819E-05	404.5594858333592	33.403	1.0848	33.172	32.752	33.837	-0.23107					87	26	6	0	0	0	0.33914	3	2357	2357;2380;2392		70.399	30.34	1	9215100			65547	2313	46203	46269	70764;70765;70766	70764					0.06018730240066361
RARTIYERF	9	Unmodified	_RARTIYERF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.5599365234375	3	404.55964	1210.65709	0.46809	0.00018937	-0.60234	-0.00024368	-0.13425	-5.4311E-05	404.5594454464146	33.429	0.77978	33.229	32.937	33.717	-0.20019					71	19	6	0	0	0	0.43628	2	2379	2379;2391		63.534	26.026	1	11796000			65548	2313	46203	46269	70767;70768	70767					0.06018730240066361
RARTIYERF	9	Unmodified	_RARTIYERF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.5598449707031	3	404.55964	1210.65709	-1.0221	-0.00041351	0.90796	0.00036732	-0.11416	-4.6184E-05	404.5600554460574	33.263	0.99211	33.097	32.76	33.752	-0.16565					86	24	6	0	0	0	0.6187	2	2361	2326;2361		51.528	16.032	1	10407000			65549	2313	46203	46269	70769;70770	70770					0.06018730240066361
RARTSPLL	8	Unmodified	_RARTSPLL_					0	0	0			REV__ENST00000420291.1_1_3:9773506-9774924:+|nuORF	REV__ENST00000420291.1_1_3:9773506-9774924:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.28302001953125	2	457.282526	912.550499	-0.43059	-0.0001969	0.39274	0.00017959	-0.037853	-1.731E-05	457.2825555339341	34.648	0.82861	34.472	34.168	34.997	-0.17557					45	20	3	0	0	0	1.0574	1	2563	2563		25.45	0	1	2183600	+		65550	32159	46204	46270	70771	70771					0.09072599745559273
RARTTPPA	8	Unmodified	_RARTTPPA_					0	0	0		NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7802429199219	2	435.251226	868.487899	-0.3521	-0.00015325	-0.033225	-1.4461E-05	-0.38533	-0.00016771	435.2513456085344	42.319	0.65365	42.087	41.62	42.273	-0.23186					31	17	3	0	0	0	0.027866	1	3803	3803		56.721	15.943	1	204010			65551	18882	46205	46271	70772	70772					0.048394536773685104
RARTTPPA	8	Unmodified	_RARTTPPA_					0	0	0		NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	2	435.251226	868.487899	0.14629	6.3674E-05	-0.33148	-0.00014428	-0.18519	-8.0605E-05	435.2511504032839	42.387	0.54325	42.157	41.899	42.442	-0.23029					27	14	3	0	0	0	0.027866	1	3821	3821		55.504	3.205	1	278440			65552	18882	46205	46271	70773	70773					0.048394536773685104
RARTVLSP	8	Unmodified	_RARTVLSP_					0	0	0		ENST00000545888.6_1_12:57906620-57906701:+|nuORF	ENST00000545888.6_1_12:57906620-57906701:+|nuORF	ENST00000545888.6_1_12:57906620-57906701:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2742614746094	2	450.274701	898.534849	0.37578	0.0001692	-1.4515	-0.00065358	-1.0757	-0.00048437	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	0.89627	1	11731	11731		51.335	7.2187	1	69580000			65553	16500	46206	46272	70774	70774					0.08152313228504227
RARVPARQK	9	Unmodified	_RARVPARQK_					0	0	0		ENST00000498008.5_1_1:46809470-46809617:+|nuORF	ENST00000498008.5_1_1:46809470-46809617:+|nuORF	ENST00000498008.5_1_1:46809470-46809617:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.3088989257812	2	541.338698	1080.66284	-0.46218	-0.0002502	3.2392	0.0017535	2.777	0.0015033	541.34011130695	43.415	0.76107	43.446	42.939	43.7	0.030823					43	20	3	0	0	0	0.024506	1	3937	3937		30.504	0	1	1302500			65554	15610	46207	46273	70775	70775					0.12573873542419278
RARVPARQK	9	Unmodified	_RARVPARQK_					0	0	0		ENST00000498008.5_1_1:46809470-46809617:+|nuORF	ENST00000498008.5_1_1:46809470-46809617:+|nuORF	ENST00000498008.5_1_1:46809470-46809617:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	541.338698	1080.66284	-1.141	-0.00061767	4.318	0.0023375	3.177	0.0017198	541.3407516157197	43.254	0.76292	43.254	42.932	43.695	0	-0.095851	0.00048805	NaN	30.504	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1209200			65555	15610	46207	46273							0.12573873542419278
RASAGRPPL	9	Unmodified	_RASAGRPPL_					0	0	0		ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7714538574219	2	462.772326	923.530098	-0.67077	-0.00031042	0.84997	0.00039334	0.17919	8.2926E-05	462.7725108090228	24.987	1.2145	24.987	24.653	25.867	0					59	28	4	0	0	0	0.80003	1	1143	1143		39.253	0.44669	1	673550			65556	15240	46208	46274	70776	70776					0.06527429085736003
RASARQLPL	9	Unmodified	_RASARQLPL_					0	0	0			REV__ENST00000455843.5_1_22:19710827-19711067:+|nuORF	REV__ENST00000455843.5_1_22:19710827-19711067:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.307861328125	2	506.306532	1010.59851	0.29222	0.00014795	2.5317	0.0012818	2.8239	0.0014298	506.3076656943394	87.659	1.06	87.623	87.279	88.339	-0.035362					68	25	4	0	0	0	0.19099	1	10987	10987		90.37	8.1293	1	1318400	+		65557	32789	46209	46275	70777	70777					0.09363673665598071
RASDGLQALL	10	Unmodified	_RASDGLQALL_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.2959594726562	2	522.29583	1042.57711	0.020762	1.0844E-05	0.36755	0.00019197	0.38831	0.00020282	522.295932007683	103.75	0.68213	103.63	103.32	104	-0.12724					48	15	5	0	0	0	0.98754	2	12904	12893;12904		47.657	1.7054	1	854300	+		65558	22253	46210	46276	70778;70779	70779					0.057522438462456194
RASFGFTCLGH	11	Unmodified	_RASFGFTCLGH_					0	0	0			REV__ENST00000507353.1_1_5:118861592-118865690:+|nuORF	REV__ENST00000507353.1_1_5:118861592-118865690:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.2892456054688	2	598.287482	1194.56041	-0.44383	-0.00026554	2.3618	0.001413	1.918	0.0011475	598.2888050380383	27.489	0.85688	27.332	27.061	27.918	-0.15664					64	20	4	0	0	0	1.0075	1	1501	1501		35.152	6.0025	1	917240	+		65559	23399	46211	46277	70780	70780					-0.029085803113730435
RASGQEARWAL	11	Unmodified	_RASGQEARWAL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.23046875	3	415.554666	1243.64217	-0.15323	-6.3675E-05	3.3383	0.0013873	3.1851	0.0013236	415.5559358663452	39.973	0.57927	39.743	39.467	40.046	-0.2302					28	14	2	0	0	0	0.02478	1	3408	3408		45.908	0	1	481030			65560	6406	46212	46278	70781	70781					0.03009238372078471
RASHFQSHS	9	Unmodified	_RASHFQSHS_					0	0	0		CON__Q5D862;ENSG00000143520|ENST00000388718|FLG2;FLG2|p.S2322F|1|0.2|ENSG00000143520|chr1:152350821-152350821|G/A|missense_variant	CON__Q5D862	CON__Q5D862	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297119140625	2	528.752121	1055.48969	-0.74848	-0.00039576	3.3993	0.0017974	2.6508	0.0014016	528.7537422842012	56.327	1.0272	56.171	55.922	56.95	-0.15601					34	28	2	0	0	0	0.024319	1	6239	6239		47.657	25.697	1	220730		+	65561	557	46213	46279	70782	70782					-0.035835373046666064
RASIKIVTP	9	Unmodified	_RASIKIVTP_					0	0	0		PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;PAXIP1|p.I1044Nfs*21|1|0.27|ENSG00000157212|chr7:154946514-154946515|-/T|frameshift_variant;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF	PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant	PAXIP1|p.I1025Tfs*9|1|0.19|ENSG00000157212|chr7:154946571-154946572|-/AGTAGACGGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.78533935546875	2	492.813659	983.612765	-0.032247	-1.5892E-05	-0.15798	-7.7853E-05	-0.19022	-9.3745E-05	492.8134646841535	57.205	0.62038	56.98	56.7	57.321	-0.2248					30	16	2	0	0	0	0.024025	1	6184	6184		52.937	13.684	1	1441900			65562	6584	46214	46280	70783	70783					0.12030326093884014
RASIYKSVI	9	Unmodified	_RASIYKSVI_					0	0	0		nc|ENSG00000131781|P49326-3|FMO5;ENST00000478432.1_1_1:146687269-146696621:-|nuORF;nc|ENSG00000131781|P49326-2|FMO5;ENSG00000131781|ENST00000254090|FMO5	nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5	nc|ENSG00000131781|P49326-3|FMO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3268432617188	2	518.811116	1035.60768	-0.24236	-0.00012574	1.863	0.00096653	1.6206	0.00084079	519.3140319531627	68.635	1.0906	68.654	68.158	69.249	0.018913					39	28	2	0	0	0	0.024344	1	8144	8144		37.812	23.674	1	133810			65563	18272;4551	46215	46281	70784	70784					0.09130022231283874
RASKANKKP	9	Unmodified	_RASKANKKP_					0	0	0		nc|ENSG00000155111|Q9BWU1-2|CDK19;ENSG00000155111|ENST00000368911|CDK19;CDK8|p.T411Lfs*8|1|0.09|ENSG00000132964|chr13:26401584-26401584|C/-|frameshift_variant;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8	nc|ENSG00000155111|Q9BWU1-2|CDK19	nc|ENSG00000155111|Q9BWU1-2|CDK19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.290283203125	2	500.306532	998.598512	-0.25956	-0.00012986	4.3242	0.0021634	4.0647	0.0020336	500.3077823886711	88.16	0.48645	88.023	87.746	88.232	-0.13743					24	11	3	0	0	0	0.024495	1	10731	10731		26.693	7.5894	1	153860			65564	6455	46216	46282	70785	70785					0.09915673665602753
RASKCNTFF	9	Unmodified	_RASKCNTFF_					0	0	0			REV__ENST00000502740.1_1_8:15664207-15664498:-|nuORF	REV__ENST00000502740.1_1_8:15664207-15664498:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7764282226562	2	537.263476	1072.5124	0.38093	0.00020466	1.5008	0.00080631	1.8817	0.001011	537.2660303596754	79.657	0.25157	79.411	79.195	79.447	-0.2465					6	5	2	0	0	0	0.024381	1	9494	9494		55.504	13.108	1	18240	+		65565	33940	46217	46283	70786	70786					-0.020956542314252147
RASKFVLVV	9	Unmodified	_RASKFVLVV_					0	0	0		ENSG00000136720|ENST00000259241|HS6ST1	ENSG00000136720|ENST00000259241|HS6ST1	ENSG00000136720|ENST00000259241|HS6ST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7839660644531	2	509.824027	1017.6335	0.1887	9.6202E-05	-1.3628	-0.00069477	-1.1741	-0.00059857	509.8232971870987	49.439	0.55542	49.439	49.212	49.768	0					33	14	3	0	0	0	0.024436	1	5131	5131		30.504	15.639	1	298980			65566	5039	46218	46284	70787	70787					0.12538916473567951
RASKFVLVV	9	Unmodified	_RASKFVLVV_					0	0	0		ENSG00000136720|ENST00000259241|HS6ST1	ENSG00000136720|ENST00000259241|HS6ST1	ENSG00000136720|ENST00000259241|HS6ST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7834777832031	2	509.824027	1017.6335	-0.10832	-5.5227E-05	-0.70914	-0.00036154	-0.81746	-0.00041676	509.82340389302806	49.661	0.45213	49.51	49.256	49.708	-0.1512					27	11	3	0	0	0	0.024541	1	5143	5143		30.504	3.7075	1	318680			65567	5039	46218	46284	70788	70788					0.12538916473567951
RASPEPAR	8	Unmodified	_RASPEPAR_					0	0	0			REV__nc|ENSG00000144485|Q96HZ4-2|HES6	REV__nc|ENSG00000144485|Q96HZ4-2|HES6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.76708984375	2	442.240858	882.467164	-0.13789	-6.098E-05	-2.1553	-0.00095318	-2.2932	-0.0010142	442.2407447431517	26.359	0.61626	26.359	25.957	26.573	0					19	14	2	0	0	0	0.027866	1	1292	1292		25.574	0	1	128420	+		65568	36746	46219	46285	70789	70789					0.021228632976999506
RASPRALPS	9	Unmodified	_RASPRALPS_					0	0	0		ENST00000541264.2_2_14:59105725-59105827:+|nuORF	ENST00000541264.2_2_14:59105725-59105827:+|nuORF	ENST00000541264.2_2_14:59105725-59105827:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7777404785156	2	477.777608	953.540663	-0.080074	-3.8258E-05	-0.84906	-0.00040566	-0.92914	-0.00044392	477.77740762104827	27.324	2.7797	27.311	26.334	29.113	-0.012981					216	69	5	0	0	0	0.56934	1	1453	1453		54.776	0	1	79837000			65569	16435	46220	46286	70790	70790					0.0620341174017085
RASPRSTTAR	10	Unmodified	_RASPRSTTAR_					0	0	0		ENSG00000185737|ENST00000372141|NRG3;nc|ENSG00000185737|P56975-2|NRG3;nc|ENSG00000185737|P56975|NRG3	ENSG00000185737|ENST00000372141|NRG3	ENSG00000185737|ENST00000372141|NRG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.8157958984375	2	551.807428	1101.6003	-0.065733	-3.6272E-05	3.3387	0.0018423	3.2729	0.001806	551.8093232005328	93.514	0.86633	93.514	93.261	94.128	0					50	20	4	0	0	0	0.03519	1	11862	11862		53.089	0	1	416810			65570	9469	46221	46287	70791	70791					0.053566826835549364
RASQRIRK	8	Unmodified	_RASQRIRK_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7537536621094	2	507.817599	1013.62064	-0.64955	-0.00032985	0.91976	0.00046707	0.27021	0.00013722	507.820271155846	29.205	0.50017	29.209	28.927	29.427	0.0031357					28	12	3	0	0	0	0.027866	1	1779	1779		30.504	0	1	222460			65571	9560	46222	46288	70792	70792					0.11437898134045099
RASRGLWHH	9	Unmodified	_RASRGLWHH_					0	0	0		ENST00000302351.8_1_5:73936805-73937162:-|nuORF	ENST00000302351.8_1_5:73936805-73937162:-|nuORF	ENST00000302351.8_1_5:73936805-73937162:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.2984619140625	2	560.299573	1118.58459	-0.76556	-0.00042894	-1.1228	-0.00062913	-1.8884	-0.0010581	560.2989624211722	38.387	0.9925	38.165	37.866	38.858	-0.22149					74	27	5	0	0	0	0.50848	2	3186	3161;3186		58.782	2.3482	1	10578000			65572	11954	46223	46289	70793;70794	70794					0.03004440957170118
RASRKFSF	8	Unmodified	_RASRKFSF_					0	0	0			REV__N6AMT1|p.T188Nfs*47|1|0.06|ENSG00000156239|chr21:28876467-28876468|-/AAACTGAAGTCAT|frameshift_variant	REV__N6AMT1|p.T188Nfs*47|1|0.06|ENSG00000156239|chr21:28876467-28876468|-/AAACTGAAGTCAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80352783203125	2	499.780151	997.545748	-0.2823	-0.00014109	-0.074478	-3.7223E-05	-0.35678	-0.00017831	499.78001405888665	53.097	0.50196	53.192	53.017	53.518	0.095669					24	13	3	0	0	0	0.027866	1	5627	5627		14.865	0	1	336730	+		65573	36416	46224	46290	70795	70795					0.04687715602801745
RASRNKAVK	9	Unmodified	_RASRNKAVK_					0	0	0		MYH9|p.E1131V|1|0.28|ENSG00000100345|chr22:36295598-36295598|T/A|missense_variant	MYH9|p.E1131V|1|0.28|ENSG00000100345|chr22:36295598-36295598|T/A|missense_variant	MYH9|p.E1131V|1|0.28|ENSG00000100345|chr22:36295598-36295598|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.3156127929688	2	515.317432	1028.62031	3.233	0.001666	-2.2386	-0.0011536	0.99442	0.00051244	515.3162533685191	17.82	0.29316	17.82	17.647	17.94	0					10	5	3	0	0	0	0.80003	1	217	217		39.253	0	1	168140			65574	18008	46225	46291	70796	70796					0.10714478414161022
RASRRGPG	8	Unmodified	_RASRRGPG_					0	0	0		ENST00000490809.1_1_9:115913289-115913979:+|nuORF	ENST00000490809.1_1_9:115913289-115913979:+|nuORF	ENST00000490809.1_1_9:115913289-115913979:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.18658447265625	2	428.746642	855.478731	0.15948	6.8375E-05	-2.1234	-0.00091039	-1.9639	-0.00084202	428.74725327126123	24.583	0.8666	24.408	24.21	25.077	-0.17484					21	19	2	0	0	0	0.027866	1	1114	1114		12.207	0	1	55598			65575	15442	46226	46292	70797	70797					0.045211051117121315
RASRTRGRA	9	Unmodified	_RASRTRGRA_					0	0	0		ENST00000297109.10_1_5:153825644-153830670:+|nuORF	ENST00000297109.10_1_5:153825644-153830670:+|nuORF	ENST00000297109.10_1_5:153825644-153830670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2822875976562	2	515.80248	1029.59041	-0.14608	-7.5351E-05	1.9947	0.0010289	1.8486	0.0009535	515.803338723294	32.932	0.70111	32.995	32.766	33.468	0.062885					43	18	4	0	0	0	0.024495	1	2246	2246		26.693	1.2427	1	1384300			65576	11859	46227	46293	70798	70798					0.07679539468836083
RASRTRGRA	9	Unmodified	_RASRTRGRA_					0	0	0		ENST00000297109.10_1_5:153825644-153830670:+|nuORF	ENST00000297109.10_1_5:153825644-153830670:+|nuORF	ENST00000297109.10_1_5:153825644-153830670:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.80248	1029.59041	-0.8843	-0.00045613	3.0522	0.0015743	2.1679	0.0011182	515.803837515431	33.208	0.54575	33.208	32.941	33.487	0	0.1237	0.00056536	NaN	19.997	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1580800			65577	11859	46227	46293							0.07679539468836083
RASRTRGRA	9	Unmodified	_RASRTRGRA_					0	0	0		ENST00000297109.10_1_5:153825644-153830670:+|nuORF	ENST00000297109.10_1_5:153825644-153830670:+|nuORF	ENST00000297109.10_1_5:153825644-153830670:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.80248	1029.59041	-0.76165	-0.00039286	2.8516	0.0014708	2.0899	0.001078	515.8037316126572	33.042	0.54597	33.049	32.776	33.321	0.0066261	-0.035151	0.00035839	NaN	19.997	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1396600			65578	11859	46227	46293							0.07679539468836083
RASSPNRAAR	10	Unmodified	_RASSPNRAAR_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-4|TRIOBP;ENST00000492485.5_1_22:38106528-38122511:+|nuORF	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7301635742188	2	543.29977	1084.58499	-0.40149	-0.00021813	2.636	0.0014321	2.2345	0.001214	543.3010840997835	51.982	0.55135	51.797	51.561	52.112	-0.18404					20	14	2	0	0	0	0.03519	1	5347	5347		18.262	0	1	356420			65579	2136	46228	46294	70799	70799					0.04607815886356548
RASTPSLSI	9	Unmodified	_RASTPSLSI_					0	0	0		ENST00000485332.7_1_X:221480-221672:-|nuORF	ENST00000485332.7_1_X:221480-221672:-|nuORF	ENST00000485332.7_1_X:221480-221672:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.2632751464844	2	466.263999	930.513445	-0.827	-0.0003856	-0.64828	-0.00030227	-1.4753	-0.00068787	466.2637693830354	37.899	1.8394	37.677	37.348	39.188	-0.22149					143	50	5	0	0	0	0.27161	1	3081	3081		79.451	2.6044	1	72322000			65580	15325	46229	46295	70800	70800					0.045408834091631434
RASVAGTHKN	10	Unmodified	_RASVAGTHKN_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7841796875	2	520.783422	1039.55229	0.26776	0.00013944	1.3048	0.00067949	1.5725	0.00081894	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	0.88896	1	13693	13693		54.776	12.38	1	6875800	+		65581	19890	46230	46296	70801	70801					0.03409608763513461
RASVAGTHKN	10	Unmodified	_RASVAGTHKN_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7840576171875	2	520.783422	1039.55229	-0.25443	-0.0001325	1.5447	0.00080446	1.2903	0.00067196	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	1.1088	1	13304	13304		31.53	2.3803	1	3782600	+		65582	19890	46230	46296	70802	70802					0.03409608763513461
RASVKTPK	8	Unmodified	_RASVKTPK_					0	0	0			REV__ENST00000556588.5_1_14:74427827-74429699:+|nuORF	REV__ENST00000556588.5_1_14:74427827-74429699:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.7268981933594	2	443.777077	885.5396	-0.63537	-0.00028196	-0.2568	-0.00011396	-0.89217	-0.00039593	443.77691174198435	39.399	0.82426	39.234	38.829	39.653	-0.16459					35	21	3	0	0	0	0.027866	1	3302	3302		12.207	3.9756	1	484760	+		65583	22484	46231	46297	70803	70803					0.09225197371279137
RATAAARH	8	Unmodified	_RATAAARH_					0	0	0		ENST00000436367.5_1_6:16658120-16761659:-|nuORF;ENST00000479680.1_1_6:16753430-16761659:-|nuORF;ENST00000467008.5_1_6:16739996-16761659:-|nuORF;ENST00000492857.1_1_6:16740003-16761659:-|nuORF	ENST00000436367.5_1_6:16658120-16761659:-|nuORF	ENST00000436367.5_1_6:16658120-16761659:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2537536621094	2	427.241193	852.467832	-0.17657	-7.5439E-05	-3.2657	-0.0013953	-3.4423	-0.0014707	427.2402511178277	23.267	0.57812	23.343	23.026	23.604	0.076241					19	13	2	0	0	0	0.027866	1	821	821		35.618	0	1	178240			65584	14278	46232	46298	70804	70804					0.03569702737411262
RATAKGKV	8	Unmodified	_RATAKGKV_					0	0	0			REV__ENSG00000149488|ENST00000358864|TMC2	REV__ENSG00000149488|ENST00000358864|TMC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2481384277344	2	415.763969	829.513385	-0.38405	-0.00015967	0.85963	0.0003574	0.47559	0.00019773	415.7640887783089	36.149	0.5843	36.187	35.927	36.511	0.03804					32	16	3	0	0	0	0.027866	1	2754	2754		30.504	12.179	1	795340	+		65585	24681	46233	46299	70805	70805					0.09180928199805294
RATDGTPAQI	10	Unmodified	_RATDGTPAQI_					0	0	0			REV__ENSG00000068097|ENST00000184956|HEATR6	REV__ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.28857421875	2	515.269813	1028.52507	-0.13485	-6.9483E-05	1.0837	0.00055838	0.94881	0.0004889	515.2723628087607	40.164	0.19184	39.939	39.813	40.004	-0.225					6	4	2	0	0	0	0.03519	1	3438	3438		47.96	0	1	105260	+		65586	20372	46234	46300	70806	70806					0.011950804324669662
RATEILKVL	9	Unmodified	_RATEILKVL_					0	0	0		RIC8A|p.M222T|1|0.19|ENSG00000177963|chr11:209939-209939|T/C|missense_variant	RIC8A|p.M222T|1|0.19|ENSG00000177963|chr11:209939-209939|T/C|missense_variant	RIC8A|p.M222T|1|0.19|ENSG00000177963|chr11:209939-209939|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2451782226562	2	521.834591	1041.65463	-1.1157	-0.00058223	2.0432	0.0010662	0.92744	0.00048397	521.8347031922318	50.178	0.63084	50.178	49.913	50.544	0					45	18	3	0	0	0	0.024292	1	5301	5301		40.778	1.5253	1	646660			65587	37835	46235	46301	70807	70807					0.13546881782417586
RATEREGA	8	Unmodified	_RATEREGA_					0	0	0			REV__ENST00000353383.5_2_17:17584885-17696414:+|nuORF	REV__ENST00000353383.5_2_17:17584885-17696414:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.22802734375	2	445.227948	888.441343	-0.72927	-0.00032469	0.87731	0.0003906	0.14804	6.5912E-05	445.2282174360294	26.285	1.5865	26.049	25.843	27.429	-0.23603					91	40	4	0	0	0	1.0574	1	1382	1382		27.882	0	1	3852200	+		65588	30744	46236	46302	70808	70808					-0.007340309445680759
RATERQLR	8	Unmodified	_RATERQLR_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.27734375	2	515.299239	1028.58392	-0.91062	-0.00046924	-2.3801	-0.0012265	-3.2907	-0.0016957	515.2981936099825	27.987	0.5675	28.068	27.722	28.289	0.081186					18	13	2	0	0	0	0.027866	1	1568	1568		33.516	0	1	47387			65589	9029	46237	46303	70809	70809					0.07077601517471521
RATFVFDDD	9	Unmodified	_RATFVFDDD_					0	0	0			REV__ENST00000552468.1_1_12:58021700-58022177:-|nuORF	REV__ENST00000552468.1_1_12:58021700-58022177:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.306396484375	2	543.248546	1084.48254	-0.33575	-0.0001824	1.6062	0.00087258	1.2705	0.00069018	543.249907374582	37.339	1.5972	37.339	36.406	38.003	0					76	43	4	0	0	0	0.024313	1	2912	2912		60.118	29.801	1	215470	+		65590	23548	46238	46304	70810	70810					-0.056323146957538484
RATFVFDDD	9	Unmodified	_RATFVFDDD_					0	0	0			REV__ENST00000552468.1_1_12:58021700-58022177:-|nuORF	REV__ENST00000552468.1_1_12:58021700-58022177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.248546	1084.48254	-0.75501	-0.00041016	3.3399	0.0018144	2.5849	0.0014043	543.2503120676947	37.325	1.354	37.262	36.548	37.902	-0.063389	-0.07583	0.00056201	NaN	60.118	54	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198920	+		65591	23548	46238	46304							-0.056323146957538484
RATGISFAI	9	Unmodified	_RATGISFAI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2689208984375	2	468.269084	934.523616	-0.49776	-0.00023308	0.45073	0.00021106	-0.047028	-2.2022E-05	468.2692121975523	60.384	0.96597	60.384	60.104	61.07	0					58	25	4	0	0	0	0.17822	2	6951	6940;6951		93.195	32.224	1	4781900			65592	9787	46239	46305	70811;70812	70812					0.05373491134378128
RATGISFAI	9	Unmodified	_RATGISFAI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.26885986328125	2	468.269084	934.523616	-0.34566	-0.00016186	0.33189	0.00015541	-0.013766	-6.4462E-06	468.26911095689854	60.652	0.94478	60.439	60.079	61.024	-0.21339					60	24	4	0	0	0	0.17822	2	6956	6956;6966		93.195	16.349	1	4426400			65593	9787	46239	46305	70813;70814	70813					0.05373491134378128
RATGISFAI	9	Unmodified	_RATGISFAI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.26922607421875	2	468.269084	934.523616	-1.27	-0.00059472	1.3163	0.0006164	0.046294	2.1678E-05	468.2695569014408	60.332	0.94157	60.411	60.088	61.029	0.078888					61	24	4	0	0	0	0.17822	2	6846	6846;6858		93.195	13.256	1	4996500			65594	9787	46239	46305	70815;70816	70815					0.05373491134378128
RATNLNRY	8	Unmodified	_RATNLNRY_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.29791259765625	2	504.27269	1006.53083	0.18229	9.1925E-05	-2.0582	-0.0010379	-1.8759	-0.00094595	504.7730113442348	36.811	0.198	36.618	36.537	36.735	-0.193					6	4	2	0	0	0	0.027866	1	2920	2920		18.324	0	1	39260	+		65595	26342	46240	46306	70817	70817					0.027822237347891132
RATRRLLI	8	Unmodified	_RATRRLLI_					0	0	0		ENST00000520019.1_1_5:179229676-179233279:-|nuORF	ENST00000520019.1_1_5:179229676-179233279:-|nuORF	ENST00000520019.1_1_5:179229676-179233279:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.77850341796875	2	499.832717	997.650882	-0.1204	-6.0181E-05	2.0236	0.0010114	1.9032	0.00095127	499.83360666469525	68.868	0.37729	68.868	68.717	69.094	0					13	9	2	0	0	0	0.027866	1	8288	8288		17.365	0	1	113880			65596	15969	46241	46307	70818	70818					0.15196256799242747
RATTLVRGG	9	Unmodified	_RATTLVRGG_					0	0	0			REV__ENST00000526338.5_1_8:145582883-145583949:+|nuORF	REV__ENST00000526338.5_1_8:145582883-145583949:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7776184082031	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.72875	1	9801	9801		44.117	5.3107	1	1283800	+		65597	34440	46242	46308	70819	70819					0.07307411740191583
RATTLVRGG	9	Unmodified	_RATTLVRGG_					0	0	0			REV__ENST00000526338.5_1_8:145582883-145583949:+|nuORF	REV__ENST00000526338.5_1_8:145582883-145583949:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7774658203125	2	465.777608	929.540663	0.30012	0.00013979	-0.38376	-0.00017875	-0.083645	-3.896E-05	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.75397	2	9737	9737;9869		42.396	8.9032	1	1281300	+		65598	34440	46242	46308	70820;70821	70820					0.07307411740191583
RATTLVRGG	9	Unmodified	_RATTLVRGG_					0	0	0			REV__ENST00000526338.5_1_8:145582883-145583949:+|nuORF	REV__ENST00000526338.5_1_8:145582883-145583949:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7774658203125	2	465.777608	929.540663	-0.52618	-0.00024508	0.34984	0.00016295	-0.17634	-8.2136E-05	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.87448	1	9694	9694		34.173	7.3764	1	1029300	+		65599	34440	46242	46308	70822	70822					0.07307411740191583
RATTSFCGM	9	Unmodified	_RATTSFCGM_					0	0	0			REV__ENST00000338087.9_1_8:134087179-134087251:-|nuORF	REV__ENST00000338087.9_1_8:134087179-134087251:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.77386474609375	2	487.215137	972.415722	-0.40515	-0.0001974	-3.4419	-0.001677	-3.8471	-0.0018744	487.21354406773975	27.401	0.51185	27.159	26.911	27.423	-0.24217					16	11	2	0	0	0	0.024294	1	1525	1525		55.504	0	1	53136	+		65600	30575	46243	46309	70823	70823					-0.07158964782854582
RATWGGLTL	9	Unmodified	_RATWGGLTL_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.77288818359375	2	487.774534	973.534515	0.1009	4.9218E-05	-1.2777	-0.00062321	-1.1767	-0.00057399	487.7738171943202	85.762	1.0746	85.567	85.215	86.29	-0.19508					53	24	3	0	0	0	0.35646	1	10403	10403		68.787	2.9837	1	1490700	+		65601	23365	46244	46310	70824	70824					0.046688935086763195
RATWGGLTL	9	Unmodified	_RATWGGLTL_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7724304199219	2	487.774534	973.534515	0.60838	0.00029675	-1.9548	-0.0009535	-1.3464	-0.00065674	487.7734926861305	85.696	1.7137	85.559	85.197	86.911	-0.13753					71	39	3	0	0	0	0.35646	1	10366	10366		68.787	5.4806	1	3167900	+		65602	23365	46244	46310	70825	70825					0.046688935086763195
RAVAASRQP	9	Unmodified	_RAVAASRQP_					0	0	0			REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	REV__ENST00000599244.5_2_19:35225081-35225894:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.79290771484375	2	478.275232	954.535912	-0.12913	-6.176E-05	3.801	0.0018179	3.6718	0.0017562	478.27654066087564	54.122	0.50985	53.877	53.657	54.166	-0.2453					43	16	3	0	0	0	0.024457	1	5725	5725		29.15	0	1	639750	+		65603	35827	46245	46311	70826	70826					0.056825275974119904
RAVAHLRSQL	10	Unmodified	_RAVAHLRSQL_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8427124023438	2	575.843813	1149.67307	-0.26488	-0.00015253	-1.2073	-0.00069524	-1.4722	-0.00084777	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0393	1	11428	11428		40.778	0.71999	1	4946400			65604	9964	46246	46312	70827	70827					0.10422436476960684
RAVAHLRSQL	10	Unmodified	_RAVAHLRSQL_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8430786132812	2	575.843813	1149.67307	-1.2575	-0.00072414	-0.21498	-0.00012379	-1.4725	-0.00084794	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0393	2	11193	11072;11193		40.778	2.4947	1	6251500			65605	9964	46246	46312	70828;70829	70829					0.10422436476960684
RAVAHLRSQL	10	Unmodified	_RAVAHLRSQL_					0	0	0		nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	nc|ENSG00000197150|Q9NUT2-3|ABCB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.84326171875	2	575.843813	1149.67307	0.019504	1.1231E-05	-1.5007	-0.00086416	-1.4812	-0.00085293	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0992	1	11061	11061		32.812	2.4947	1	5880000			65606	9964	46246	46312	70830	70830					0.10422436476960684
RAVARHPTL	9	Unmodified	_RAVARHPTL_					0	0	0		ENST00000483819.1_1_7:50850354-50850459:-|nuORF	ENST00000483819.1_1_7:50850354-50850459:-|nuORF	ENST00000483819.1_1_7:50850354-50850459:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7894592285156	2	510.8067	1019.59885	0.51218	0.00026162	-2.3328	-0.0011916	-1.8207	-0.00093	510.80565112508543	85.852	1.1625	85.703	85.368	86.531	-0.14967					44	26	2	0	0	0	0.024436	1	10383	10383		38.806	0	1	290460			65607	15292	46247	46313	70831	70831					0.08983093385461416
RAVAVTNTLP	10	Unmodified	_RAVAVTNTLP_					0	0	0		nc|ENSG00000077327|O75602-4|SPAG6;nc|ENSG00000077327|O75602-2|SPAG6;nc|ENSG00000077327|O75602-5|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3115234375	2	521.306198	1040.59784	-0.75796	-0.00039513	0.8747	0.00045599	0.11675	6.0861E-05	521.3070231279734	53.187	0.80917	53.039	52.72	53.529	-0.14723					62	21	5	0	0	0	0.03519	1	5744	5744		19.104	0	1	8489300			65608	1608	46248	46314	70832	70832					0.07916834225898128
RAVCPARW	8	Unmodified	_RAVCPARW_					0	0	0			REV__ENST00000492679.5_1_7:128520123-128520792:-|nuORF	REV__ENST00000492679.5_1_7:128520123-128520792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.79241943359375	2	479.755621	957.49669	0.26069	0.00012507	-4.2692	-0.0020482	-4.0085	-0.0019231	479.75302066012927	54.232	0.45301	54.085	53.889	54.342	-0.14723					24	12	3	0	0	0	0.027866	1	5858	5858		35.201	12.158	1	91679	+		65609	33746	46249	46315	70833	70833					0.016241040421846265
RAVDQVTWGE	10	Unmodified	_RAVDQVTWGE_					0	0	0			REV__ENSG00000176903|ENST00000316836|PNMA1	REV__ENSG00000176903|ENST00000316836|PNMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.7802734375	2	580.78837	1159.56219	-0.96548	-0.00056074	4.3985	0.0025546	3.4331	0.0019939	580.7907749055261	44.511	0.42465	44.406	44.203	44.628	-0.10468					15	10	2	0	0	0	0.03519	1	4184	4184		32.812	17.948	1	184410	+		65610	27058	46250	46316	70834	70834					-0.01121248021786414
RAVDTRVP	8	Unmodified	_RAVDTRVP_					0	0	0			REV__ENST00000357037.5_1_17:40575120-40575375:-|nuORF	REV__ENST00000357037.5_1_17:40575120-40575375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2644958496094	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	1.0284	1	10102	10102		32.812	2.3088	1	2903100	+		65611	30813	46251	46317	70835	70835					0.054357228488470355
RAVDTRVP	8	Unmodified	_RAVDTRVP_					0	0	0			REV__ENST00000357037.5_1_17:40575120-40575375:-|nuORF	REV__ENST00000357037.5_1_17:40575120-40575375:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2643737792969	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0106	1	10031	10031		35.618	3.6634	1	2920900	+		65612	30813	46251	46317	70836	70836					0.054357228488470355
RAVEERERA	9	Unmodified	_RAVEERERA_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.3502807617188	2	558.299436	1114.58432	-0.13423	-7.494E-05	2.5339	0.0014147	2.3997	0.0013397	558.3007513726195	49.928	0.61069	50.009	49.7	50.31	0.080994					45	17	4	0	0	0	0.024344	1	5105	5105		37.812	8.662	1	1389300			65613	2661	46252	46318	70837	70837					0.03160976446656605
RAVEERERA	9	Unmodified	_RAVEERERA_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.299436	1114.58432	0.07842	4.3782E-05	5.3327	0.0029772	5.4111	0.003021	558.8036076080701	50.482	0.34193	50.202	49.953	50.295	-0.27977	0.10753	0.0029654	NaN	54.776	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119040			65614	2661	46252	46318							0.03160976446656605
RAVEFKVVE	9	Unmodified	_RAVEFKVVE_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7989501953125	2	538.808574	1075.60259	-0.72281	-0.00038945	2.0444	0.0011016	1.3216	0.0007121	538.8089218383062	70.692	0.58536	70.704	70.466	71.052	0.012421					19	13	2	0	0	0	0.024477	1	8438	8438		20.947	0	1	278250			65615	7391	46253	46319	70838	70838					0.06781718368665679
RAVFQATLKV	10	Unmodified	_RAVFQATLKV_					0	0	0			REV__ENSG00000099995|ENST00000215793|SF3A1	REV__ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.75439453125	2	566.84549	1131.67643	-0.75578	-0.00042841	0.40819	0.00023138	-0.34759	-0.00019703	566.845609813927	50.04	0.39035	50.121	49.954	50.344	0.08099					23	11	3	0	0	0	0.03519	1	5171	5171		26.693	0	1	208080	+		65616	21030	46254	46320	70839	70839					0.11585686530975181
RAVGLVQGFL	10	Unmodified	_RAVGLVQGFL_					0	0	0			REV__ENST00000603611.5_1_14:35591106-35591253:+|nuORF	REV__ENST00000603611.5_1_14:35591106-35591253:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8191528320312	2	530.319109	1058.62366	-0.026731	-1.4176E-05	2.5828	0.0013697	2.5561	0.0013555	530.3205480872906	19.764	1.0204	19.603	19.183	20.204	-0.16079					40	20	4	0	0	0	0.03519	1	466	466		19.997	9.1312	1	1981700	+		65617	35897	46255	46321	70840	70840					0.09669728468179528
RAVGPLKGDV	10	Unmodified	_RAVGPLKGDV_					0	0	0		ENST00000564161.1_1_16:88690785-88691832:+|nuORF	ENST00000564161.1_1_16:88690785-88691832:+|nuORF	ENST00000564161.1_1_16:88690785-88691832:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.33154296875	2	506.300916	1010.58728	-0.37655	-0.00019065	2.1847	0.0011061	1.8081	0.00091546	506.8041199325202	73.682	0.1105	73.411	73.348	73.459	-0.27126					4	2	2	0	0	0	0.03519	1	8969	8969		23.523	9.7474	1	69964			65618	16881	46256	46322	70841	70841					0.0824085157147465
RAVGTNSTLHY	11	Unmodified	_RAVGTNSTLHY_					0	0	0		ENST00000479084.1_1_1:156264456-156264780:-|nuORF;ENSG00000198715|ENST00000362007|GLMP	ENST00000479084.1_1_1:156264456-156264780:-|nuORF	ENST00000479084.1_1_1:156264456-156264780:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.8780212402344	3	406.879038	1217.61528	3.4662	0.0014103	-3.1049	-0.0012633	0.36138	0.00014704	406.8777788220711	19.814	1.6126	19.88	19.488	21.101	0.066195					89	32	5	0	0	0	0.95911	1	408	408		45.908	3.57	1	1047400			65619	10176	46257	46323	70842	70842					0.015181297608933164
RAVGVVPQ	8	Unmodified	_RAVGVVPQ_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2273864746094	2	413.250695	824.486836	1.0209	0.00042188	0.19714	8.147E-05	1.218	0.00050335	413.25014612318506	36.986	0.711	36.777	36.364	37.075	-0.2092					37	17	3	0	0	0	0.027866	1	2914	2914		31.955	0	1	784230			65620	4509	46258	46324	70843	70843					0.06757239308467433
RAVGVVVKV	9	Unmodified	_RAVGVVVKV_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.8102722167969	2	463.810919	925.607286	-0.31538	-0.00014628	-0.69312	-0.00032147	-1.0085	-0.00046775	463.8104599909952	39.068	0.82227	39.092	38.919	39.741	0.023727					51	22	3	0	0	0	0.62163	1	3278	3278		51.335	1.3109	1	2319600	+		65621	22407	46259	46325	70844	70844					0.14150647302085417
RAVGVVVKV	9	Unmodified	_RAVGVVVKV_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.810919	925.607286	-1.2188	-0.00056528	0.5768	0.00026752	-0.64197	-0.00029775	463.81095702789077	38.796	0.39862	38.631	38.396	38.795	-0.16459	-0.13996	0.0010678	NaN	51.335	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183330	+		65622	22407	46259	46325							0.14150647302085417
RAVGVVVKV	9	Unmodified	_RAVGVVVKV_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.810919	925.607286	-0.62985	-0.00029213	-0.39854	-0.00018485	-1.0284	-0.00047698	463.8105580209657	38.911	0.61618	38.688	38.457	39.073	-0.22311	-0.083291	0.00016302	NaN	51.335	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203060	+		65623	22407	46259	46325							0.14150647302085417
RAVGVVVKV	9	Unmodified	_RAVGVVVKV_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.810919	925.607286	-0.13829	-6.4141E-05	-1.211	-0.00056168	-1.3493	-0.00062582	463.81030335885276	38.888	0.39648	38.662	38.443	38.839	-0.2257	-0.10892	-0.00059064	NaN	51.335	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219270	+		65624	22407	46259	46325							0.14150647302085417
RAVISDPEQNL	11	Unmodified	_RAVISDPEQNL_					0	0	0		nc|ENSG00000180881|Q9BXY5-2|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2;nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5|CAPS2;ENST00000336815.10_1_12:75687137-75710066:-|nuORF	nc|ENSG00000180881|Q9BXY5-2|CAPS2	nc|ENSG00000180881|Q9BXY5-2|CAPS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7616882324219	3	414.554331	1240.64116	-0.10267	-4.2564E-05	3.504	0.0014526	3.4013	0.00141	414.5556821920993	45.594	0.74496	45.638	45.344	46.088	0.04388					46	21	3	0	0	0	0.024747	1	4345	4345		39.873	18.187	1	1606000			65625	9005	46260	46326	70845	70845					0.030469792125359163
RAVKEKHI	8	Unmodified	_RAVKEKHI_					0	0	0			REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF;REV__nc|ENSG00000136754|Q8IZP0-10|ABI1	REV__ENST00000376135.5_1_2:204193204-204247972:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.80743408203125	2	490.803626	979.592698	0.60343	0.00029617	2.8946	0.0014207	3.498	0.0017168	490.80522986585635	96.276	1.5143	96.283	95.988	97.502	0.0065079					93	34	5	0	0	0	1.0574	1	12222	12222		24.203	2.2429	1	4546800	+		65626	31349;23680	46261	46327	70846	70846					0.10208575153933452
RAVKLRRE	8	Unmodified	_RAVKLRRE_					0	0	0			REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8152465820312	2	514.327799	1026.64105	-0.62622	-0.00032208	3.3139	0.0017044	2.6877	0.0013823	514.3292477571689	44.797	0.10342	44.833	44.783	44.887	0.0369					4	2	2	0	0	0	0.027866	1	4252	4252		40.573	5.3719	1	185420	+		65627	22992	46262	46328	70847	70847					0.12879068793859005
RAVLASQTSL	10	Unmodified	_RAVLASQTSL_					0	0	0		ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	ENSG00000166263|ENST00000376352|STXBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3037719726562	2	523.303655	1044.59276	-0.50892	-0.00026632	0.8433	0.0004413	0.33437	0.00017498	523.3039441520884	90.238	1.1068	90.113	89.805	90.912	-0.12513					64	26	4	0	0	0	1.0002	1	11070	11070		45.972	0	1	1517700			65628	7532	46263	46329	70848	70848					0.07224530363305348
RAVLLFSCVGI	11	Unmodified	_RAVLLFSCVGI_					0	0	0			REV__CCNG2|p.A109V|1|0.35|ENSG00000138764|chr4:77160770-77160770|C/T|missense_variant	REV__CCNG2|p.A109V|1|0.35|ENSG00000138764|chr4:77160770-77160770|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3433837890625	2	589.341726	1176.6689	-2.3877	-0.0014071	4.3747	0.0025782	1.987	0.001171	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0017	1	11522	11522		36.447	2.2742	1	4758600	+		65629	19262	46264	46330	70849	70849					0.08763210939059718
RAVMLLLLL	9	Unmodified	_RAVMLLLLL_					0	0	0		ENSG00000110944|ENST00000228534|IL23A	ENSG00000110944|ENST00000228534|IL23A	ENSG00000110944|ENST00000228534|IL23A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3250122070312	2	521.34628	1040.67801	-1.5115	-0.00078799	-0.38539	-0.00020092	-1.8969	-0.00098892	521.3459359469721	49.41	0.14931	49.484	49.428	49.578	0.074196					5	3	2	0	0	0	0.024354	1	5033	5033		38.806	0	1	44955			65630	3078	46265	46331	70850	70850					0.15929604295411082
RAVNRVTYGG	10	Unmodified	_RAVNRVTYGG_					0	0	0			REV__ENST00000486618.1_1_5:141005759-141005867:-|nuORF	REV__ENST00000486618.1_1_5:141005759-141005867:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8402709960938	2	546.799072	1091.58359	-0.55245	-0.00030208	-0.94399	-0.00051617	-1.4964	-0.00081825	546.7961722639823	99.624	0.2536	99.634	99.49	99.743	0.010231					8	5	2	0	0	0	0.03519	1	12694	12694		71.877	6.4121	1	39263	+		65631	26593	46266	46332	70851	70851					0.0414618179761419
RAVPGLFAR	9	Unmodified	_RAVPGLFAR_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|152|3|anti-sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|152|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.75067138671875	2	493.798343	985.582134	-0.49004	-0.00024198	3.4623	0.0017097	2.9722	0.0014677	493.7998922758514	45.378	0.60951	45.23	44.938	45.547	-0.1488					51	17	4	0	0	0	0.024506	1	4395	4395		23.042	16.73	1	3355800	+		65632	36105	46267	46333	70852	70852					0.08876592499507296
RAVPLLLDP	9	Unmodified	_RAVPLLLDP_					0	0	0			REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF	REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.295166015625	2	497.30821	992.601866	0.3894	0.00019365	4.1955	0.0020865	4.5849	0.0022801	497.309960266756	41.067	0.39098	40.944	40.833	41.224	-0.12317					14	10	2	0	0	0	0.024294	1	3680	3680		55.504	25.001	1	116810	+		65633	34745	46268	46334	70853	70853					0.10526923719623937
RAVPLLLLGGH	11	Unmodified	_RAVPLLLLGGH_					0	0	0			REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.3604125976562	2	573.361308	1144.70806	0.36403	0.00020872	-0.45126	-0.00025874	-0.087229	-5.0014E-05	573.3609313712697	52.548	0.89056	52.401	52.057	52.948	-0.14723					53	22	4	0	0	0	0.6558	1	5621	5621		66.429	9.9955	1	1083200	+		65634	30620	46269	46335	70854	70854					0.14149679284969352
RAVPLLLLGGH	11	Unmodified	_RAVPLLLLGGH_					0	0	0			REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.3601684570312	2	573.361308	1144.70806	-0.63504	-0.00036411	0.14179	8.1296E-05	-0.49325	-0.00028281	573.3612556674474	52.373	1.2478	52.465	52.119	53.367	0.091938					69	32	4	0	0	0	0.93615	1	5539	5539		49.442	8.6634	1	1547600	+		65635	30620	46269	46335	70855	70855					0.14149679284969352
RAVQERGEL	9	Unmodified	_RAVQERGEL_					0	0	0			REV__ENSG00000169871|ENST00000306085|TRIM56	REV__ENSG00000169871|ENST00000306085|TRIM56	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.8163452148438	2	529.291079	1056.56761	0.4578	0.00024231	-3.689	-0.0019525	-3.2311	-0.0017102	529.2888393726787	68.277	0.36048	68.046	67.835	68.195	-0.23048					13	8	2	0	0	0	0.024021	1	7882	7882		58.782	0	1	132050	+		65636	26407	46270	46336	70856	70856					0.041584755607118495
RAVQERGEL	9	Unmodified	_RAVQERGEL_					0	0	0			REV__ENSG00000169871|ENST00000306085|TRIM56	REV__ENSG00000169871|ENST00000306085|TRIM56	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.291079	1056.56761	-0.14005	-7.4129E-05	-7.0288	-0.0037203	-7.1689	-0.0037944	529.2892971280038	68.336	0.43199	68.044	67.857	68.289	-0.29267	-0.019322	-0.0030046	NaN	32.812	11	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78371	+		65637	26407	46270	46336							0.041584755607118495
RAVQLQELW	9	Unmodified	_RAVQLQELW_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2901611328125	2	571.819473	1141.62439	-0.95108	-0.00054384	-0.59512	-0.0003403	-1.5462	-0.00088415	571.8190378362526	65.762	1.1437	65.549	65.012	66.156	-0.21327					57	27	4	0	0	0	0.024313	1	7518	7518		60.118	14.146	1	696380			65638	1392	46271	46337	70857	70857					0.059245231172326385
RAVRAARA	8	Unmodified	_RAVRAARA_					0	0	0		ENST00000320892.10_1_2:7057533-7081179:+|nuORF	ENST00000320892.10_1_2:7057533-7081179:+|nuORF	ENST00000320892.10_1_2:7057533-7081179:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.8912658691406	2	435.77266	869.530767	-0.092259	-4.0204E-05	-3.1907	-0.0013904	-3.283	-0.0014306	435.77399591774997	64.525	0.86259	64.269	64.038	64.901	-0.25563					29	21	2	0	0	0	0.027866	1	7417	7417		7.6903	0	1	143920			65639	12199	46272	46338	70858	70858					0.09078268525456679
RAVRASLTT	9	Unmodified	_RAVRASLTT_					0	0	0			REV__C12orf10-NFX1|1|fusion	REV__C12orf10-NFX1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7907409667969	2	487.790715	973.566878	0.33726	0.00016451	-0.60673	-0.00029596	-0.26947	-0.00013144	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.85329	1	10080	10080		35.618	5.1146	1	1999500	+		65640	19226	46273	46339	70859	70859					0.0790368091164737
RAVRGGGGGG	10	Unmodified	_RAVRGGGGGG_					0	0	0		ENST00000397981.7_1_19:7968762-7974950:+|nuORF;ENST00000397983.7_1_19:7968783-7974950:+|nuORF	ENST00000397981.7_1_19:7968762-7974950:+|nuORF	ENST00000397981.7_1_19:7968762-7974950:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.51318359375	2	422.230825	842.447097	-0.068959	-2.9117E-05	0.97849	0.00041315	0.90953	0.00038403	422.23281169130206	31.263	0.35807	31.332	31.248	31.606	0.068962					11	8	2	0	0	0	0.03519	1	2052	2052		27.882	0	1	52951			65641	13610	46274	46340	70860	70860					0.019571123577861727
RAVRPKRRVQ	10	Unmodified	_RAVRPKRRVQ_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5923767089844	3	422.605695	1264.79525	-0.22161	-9.3656E-05	0.33786	0.00014278	0.11624	4.9124E-05	422.60551654384176	49.785	0.37906	49.859	49.731	50.11	0.074196					15	10	2	0	0	0	0.03519	1	5082	5082		7.0187	0	1	183210			65642	9981	46275	46341	70861	70861					0.17344898279202425
RAVSARLLRGV	11	Unmodified	_RAVSARLLRGV_					0	0	0			REV__nc|ENSG00000165672|P30048-2|PRDX3	REV__nc|ENSG00000165672|P30048-2|PRDX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.3787231445312	2	599.380563	1196.74657	0.054084	3.2417E-05	-1.0311	-0.000618	-0.97698	-0.00058558	599.3798319820231	102.48	0.58797	102.31	102.05	102.64	-0.17178					47	13	5	0	0	0	1.0238	1	12700	12700		31.53	0	1	851410	+		65643	25915	46276	46342	70862	70862					0.15606984919440947
RAVSARTLT	9	Unmodified	_RAVSARTLT_					0	0	0			REV__nc|ENSG00000103111|Q7L1V2-2|MON1B	REV__nc|ENSG00000103111|Q7L1V2-2|MON1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.790771484375	2	487.790715	973.566878	0.37956	0.00018514	-0.58277	-0.00028427	-0.20321	-9.9126E-05	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.72875	1	10136	10136		44.117	6.9577	1	2659000	+		65644	21356	46277	46343	70863	70863					0.0790368091164737
RAVSGASLQL	10	Unmodified	_RAVSGASLQL_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2910461425781	2	501.290548	1000.56654	0.79479	0.00039842	-1.5169	-0.00076043	-0.72216	-0.00036201	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.811	1	10622	10622		59.931	6.5793	1	8460100	+		65645	23894	46278	46344	70864	70864					0.06628261191815454
RAVSGASLQL	10	Unmodified	_RAVSGASLQL_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.29119873046875	2	501.290548	1000.56654	-0.51649	-0.00025891	-0.28986	-0.0001453	-0.80636	-0.00040422	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.75651	1	10535	10535		63.534	2.5619	1	8326900	+		65646	23894	46278	46344	70865	70865					0.06628261191815454
RAVSTHQI	8	Unmodified	_RAVSTHQI_					0	0	0		ENST00000573881.1_1_17:9444067-9460824:-|nuORF;ENSG00000170310|ENST00000306357|STX8;ENST00000573373.1_1_17:9456527-9479125:-|nuORF	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	ENST00000573881.1_1_17:9444067-9460824:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.254638671875	2	456.256508	910.498464	0.065174	2.9736E-05	-0.21828	-9.9589E-05	-0.1531	-6.9853E-05	456.25631766914756	99.563	0.5978	99.394	99.161	99.759	-0.16862					35	15	3	0	0	0	1.0574	1	12326	12326		21.96	0	1	196780			65647	8021	46279	46345	70866	70866					0.039634363317986754
RAVTAQLAQ	9	Unmodified	_RAVTAQLAQ_					0	0	0			REV__nc|ENSG00000160185|P57075-3|UBASH3A	REV__nc|ENSG00000160185|P57075-3|UBASH3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2773742675781	2	479.277441	956.540328	0.41467	0.00019874	-1.4395	-0.00068993	-1.0249	-0.00049119	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	0.97973	1	10473	10473		24.519	1.4767	1	1015600	+		65648	25292	46280	46346	70867	70867					0.060319920203255606
RAVTVLKP	8	Unmodified	_RAVTVLKP_					0	0	0		ENST00000334126.11_1_11:73724306-73724423:-|nuORF	ENST00000334126.11_1_11:73724306-73724423:-|nuORF	ENST00000334126.11_1_11:73724306-73724423:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7698974609375	2	442.28982	882.565087	-0.22153	-9.7979E-05	0.39613	0.0001752	0.1746	7.7226E-05	442.28988150084876	20.406	0.53633	20.301	20.079	20.616	-0.10477					13	10	2	0	0	0	0.027866	1	532	532		16.473	3.514	1	36102			65649	12378	46281	46347	70868	70868					0.11910671893690505
RAVVPGVPY	9	Unmodified	_RAVVPGVPY_					0	0	0			REV__ENST00000467617.1_1_22:41363658-41368489:+|nuORF	REV__ENST00000467617.1_1_22:41363658-41368489:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2777404785156	2	479.279452	956.544351	0.21198	0.0001016	-4.0742	-0.0019527	-3.8622	-0.0018511	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.88411	1	10584	10584		33.516	0.022601	1	4888300	+		65650	33082	46282	46348	70869	70869					0.0643408151404401
RAVVPIVQ	8	Unmodified	_RAVVPIVQ_					0	0	0			REV__ENSG00000117595|ENST00000367021|IRF6	REV__ENSG00000117595|ENST00000367021|IRF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2479553222656	2	441.281995	880.549437	-0.3403	-0.00015017	0.34461	0.00015207	0.0043079	1.901E-06	441.28207540718773	57.52	1.133	57.616	57.204	58.337	0.095306					50	30	2	0	0	0	0.027866	1	6476	6476		60.294	12.378	1	2207600	+		65651	22358	46283	46349	70870	70870					0.10438385376653514
RAVVPIVQ	8	Unmodified	_RAVVPIVQ_					0	0	0			REV__ENSG00000117595|ENST00000367021|IRF6	REV__ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	441.281995	880.549437	-0.79201	-0.0003495	1.06	0.00046778	0.26803	0.00011828	441.28231972902165	57.792	0.5844	57.614	57.169	57.754	-0.17775	0.0068749	0.00064715	NaN	60.294	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1289400	+		65652	22358	46283	46349							0.10438385376653514
RAVVPIVQ	8	Unmodified	_RAVVPIVQ_					0	0	0			REV__ENSG00000117595|ENST00000367021|IRF6	REV__ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.281995	880.549437	-0.037164	-1.64E-05	0.13753	6.0688E-05	0.10036	4.4288E-05	441.28190265509124	57.771	0.64114	57.581	57.148	57.789	-0.19018	-0.026144	-0.00016703	NaN	60.294	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1369800	+		65653	22358	46283	46349							0.10438385376653514
RAVVPIVQ	8	Unmodified	_RAVVPIVQ_					0	0	0			REV__ENSG00000117595|ENST00000367021|IRF6	REV__ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	441.281995	880.549437	-0.056343	-2.4863E-05	0.016192	7.1453E-06	-0.040151	-1.7718E-05	441.28187628328004	57.831	0.54287	57.597	57.237	57.78	-0.23363	-0.010028	-0.00027412	NaN	60.294	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1206000	+		65654	22358	46283	46349							0.10438385376653514
RAVVRHRRAS	10	Unmodified	_RAVVRHRRAS_					0	0	0		ENST00000491031.5_1_2:25016788-25038721:+|nuORF;ENST00000486527.6_1_2:25016788-25037388:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO;ENST00000498362.1_1_2:25016366-25039516:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF;ENST00000498362.1_1_2:25016366-25039516:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.365966796875	2	604.365779	1206.717	-0.44133	-0.00026673	2.1579	0.0013041	1.7165	0.0010374	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.0997	1	13194	13194		14.865	0	1	5077600			65655	15449;15619	46284	46350	70871	70871					0.12191465693990722
RAVVVVAAA	9	Unmodified	_RAVVVVAAA_					0	0	0			REV__ENST00000359204.4_1_10:95457906-95462310:-|nuORF	REV__ENST00000359204.4_1_10:95457906-95462310:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.26153564453125	2	428.27417	854.533787	-0.79852	-0.00034199	-1.9774	-0.00084685	-2.7759	-0.0011888	428.2727275105116	90.043	0.52483	90.043	89.689	90.214	0					17	12	2	0	0	0	0.024386	1	11337	11337		3.41	0	1	456890	+		65656	30874	46285	46351	70872	70872					0.1007009885960315
RAWALSGWVG	10	Unmodified	_RAWALSGWVG_					0	0	0		ENST00000577929.1_1_17:7477225-7477378:+|nuORF	ENST00000577929.1_1_17:7477225-7477378:+|nuORF	ENST00000577929.1_1_17:7477225-7477378:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2404174804688	2	551.793258	1101.57196	-0.89685	-0.00049487	2.5976	0.0014333	1.7007	0.00093846	551.7926498592772	82.978	0.93757	83.005	82.617	83.555	0.02655					41	21	3	0	0	0	0.03519	1	10291	10291		35.618	0	1	266480			65657	17125	46286	46352	70873	70873					0.025239847742795973
RAWDVLLD	8	Unmodified	_RAWDVLLD_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3064880371094	2	494.266542	986.51853	-0.11703	-5.7842E-05	0.60787	0.00030045	0.49084	0.00024261	494.2665085086244	55.9	1.4375	55.744	54.994	56.431	-0.15601					79	39	3	0	0	0	0.027866	1	6224	6224		63.306	0	1	637200			65658	16521	46287	46353	70874	70874					0.024731872717552505
RAWLGPVDLLV	11	Unmodified	_RAWLGPVDLLV_					0	0	0			REV__ENST00000199320.8_1_5:61699532-61699646:-|nuORF	REV__ENST00000199320.8_1_5:61699532-61699646:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8688354492188	2	619.866423	1237.71829	0.12405	7.6895E-05	4.447	0.0027565	4.5711	0.0028334	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0292	3	11348	11348;11372;11384		30.318	5.6474	1	1596200	+		65659	29295	46288	46354	70875;70876;70877	70875					0.10894242219501393
RAWLPGALY	9	Unmodified	_RAWLPGALY_					0	0	0		ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7510375976562	2	523.792727	1045.5709	0.055027	2.8823E-05	2.7526	0.0014418	2.8077	0.0014706	523.7933730239071	39.43	0.4884	39.204	38.983	39.472	-0.2257					27	12	3	0	0	0	0.024412	1	3357	3357		40.573	1.7665	1	253770			65660	10195	46289	46355	70878	70878					0.049937704053718335
RAWLTTCILCT	11	Unmodified	_RAWLTTCILCT_					0	0	0		ENST00000558165.3_1_15:76551898-76552225:-|nuORF	ENST00000558165.3_1_15:76551898-76552225:-|nuORF	ENST00000558165.3_1_15:76551898-76552225:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.713623046875	3	427.554509	1279.6417	-0.27873	-0.00011917	3.4962	0.0014948	3.2174	0.0013756	427.5559759753792	31.349	0.41317	31.361	31.17	31.583	0.011797					16	9	2	0	0	0	0.024749	1	2073	2073		22.562	4.7284	1	162530			65661	16745	46290	46356	70879	70879					0.013063593363312975
RAWTVGWCV	9	Unmodified	_RAWTVGWCV_					0	0	0		ENST00000487002.1_1_1:155279855-155282231:+|nuORF;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS	ENST00000487002.1_1_1:155279855-155282231:+|nuORF	ENST00000487002.1_1_1:155279855-155282231:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8003540039062	2	539.268561	1076.52257	0.030973	1.6703E-05	-2.6608	-0.0014349	-2.6299	-0.0014182	539.2673470786713	68.673	0.64088	68.43	68.149	68.79	-0.24278					21	15	2	0	0	0	0.024457	1	7915	7915		21.96	0	1	360190			65662	6836	46291	46357	70880	70880					-0.012630465061647556
RAYLVPHPA	9	Unmodified	_RAYLVPHPA_					0	0	0		KEL|p.G212V|1|0.21|ENSG00000197993|chr7:142957864-142957864|C/A|missense_variant	KEL|p.G212V|1|0.21|ENSG00000197993|chr7:142957864-142957864|C/A|missense_variant	KEL|p.G212V|1|0.21|ENSG00000197993|chr7:142957864-142957864|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2538452148438	2	512.290351	1022.56615	-0.042827	-2.194E-05	-1.4548	-0.0007453	-1.4977	-0.00076724	512.2899776220005	54.405	0.38938	54.255	54.084	54.474	-0.15036					15	10	2	0	0	0	0.024325	1	5906	5906		40.573	0	1	189440			65663	17794	46292	46358	70881	70881					0.05576886262599601
RAYNSRLQRER	11	Unmodified	_RAYNSRLQRER_					0	0	0		ENSG00000099800|ENST00000215570|TIMM13	ENSG00000099800|ENST00000215570|TIMM13	ENSG00000099800|ENST00000215570|TIMM13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2380676269531	3	483.599157	1447.77564	-0.22017	-0.00010647	2.4591	0.0011892	2.2389	0.0010827	483.60166214664673	40.564	0.43285	40.339	40.114	40.547	-0.225					15	11	2	0	0	0	0.024869	1	3531	3531		11.932	2.2862	1	218940			65664	2084	46293	46359	70882	70882					0.0696647747777206
RAYQGERQS	9	Unmodified	_RAYQGERQS_					0	0	0			REV__nc|ENSG00000118257|O60462-4|NRP2	REV__nc|ENSG00000118257|O60462-4|NRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3239135742188	2	547.770511	1093.52647	-0.059626	-3.2662E-05	-0.21556	-0.00011808	-0.27519	-0.00015074	548.2725771240853	75.224	0.45984	74.949	74.597	75.057	-0.27573					14	10	2	0	0	0	0.024477	1	8894	8894		20.947	0	1	51592	+		65665	22395	46294	46360	70883	70883					-0.01655285478773294
RAYSDLSRA	9	Unmodified	_RAYSDLSRA_					0	0	0		ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7698364257812	2	519.76998	1037.52541	-0.75375	-0.00039178	0.39296	0.00020425	-0.36079	-0.00018753	519.7700457791348	35.635	0.83399	35.679	35.305	36.139	0.04406					51	21	3	0	0	0	0.39228	1	2713	2713		66.429	2.222	1	1697900			65666	4645	46295	46361	70884	70884					0.008145001523189421
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8130493164062	2	521.811451	1041.60835	-0.37996	-0.00019827	2.8792	0.0015024	2.4992	0.0013041	521.8129367151431	41.316	0.74377	41.316	40.944	41.688	0					65	18	4	0	0	0	0.92825	1	3746	3746		30.504	2.6214	1	14596000			65667	14115	46296	46362	70885	70885					0.0892086167098114
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8129272460938	2	521.811451	1041.60835	-0.33508	-0.00017485	3.1465	0.0016419	2.8114	0.001467	521.8130217566711	41.917	1.8968	41.917	41.579	43.475	0					149	53	4	0	0	0	0.70186	3	3771	3771;3808;3831		45.952	7.1458	1	7471500			65668	14115	46296	46362	70886;70887;70888	70886					0.0892086167098114
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8128662109375	2	521.811451	1041.60835	-0.20542	-0.00010719	2.7145	0.0014165	2.5091	0.0013093	521.8128611872344	41.5	0.74377	41.377	40.943	41.687	-0.12318					72	20	4	0	0	0	0.83071	1	3767	3767		37.159	2.9866	1	15953000			65669	14115	46296	46362	70889	70889					0.0892086167098114
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8128662109375	2	521.811451	1041.60835	-0.36354	-0.0001897	3.1628	0.0016504	2.7993	0.0014607	521.8130669238732	42.143	1.7596	42.011	41.678	43.437	-0.1322					142	49	4	0	0	0	0.92825	1	3855	3855		30.504	2.6214	1	7330800			65670	14115	46296	46362	70890	70890					0.0892086167098114
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8129272460938	2	521.811451	1041.60835	-0.13268	-6.9233E-05	2.6217	0.0013681	2.4891	0.0012988	521.8128118762803	41.489	1.2789	41.512	41.111	42.39	0.023006					85	36	4	0	0	0	0.92825	1	3654	3654		30.504	1.3336	1	16691000			65671	14115	46296	46362	70891	70891					0.0892086167098114
RAYYAQAVN	9	Unmodified	_RAYYAQAVN_					0	0	0			REV__nc|ENSG00000128641|O43795-2|MYO1B	REV__nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2926635742188	2	528.267073	1054.51959	-1.275	-0.00067353	-4.0489	-0.0021389	-5.3239	-0.0028124	528.2639585237955	54.526	0.55098	54.526	54.357	54.908	0					23	15	2	0	0	0	0.024405	1	6008	6008		27.882	0	1	236880	+		65672	23003	46297	46363	70892	70892					-0.005485983593416677
RCALINKCS	9	Unmodified	_RCALINKCS_					0	0	0			REV__ENSG00000118503|ENST00000612899|TNFAIP3	REV__ENSG00000118503|ENST00000612899|TNFAIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.26165771484375	2	504.259879	1006.50521	0.16635	8.3884E-05	2.8757	0.0014501	3.042	0.001534	504.26121678236393	70.962	0.65417	70.69	70.493	71.147	-0.27185					39	14	4	0	0	0	0.11092	1	8272	8272		108.09	14.892	1	1238500	+		65673	22410	46298	46364	70893	70893					0.002212898965012755
RCALINKCS	9	Unmodified	_RCALINKCS_					0	0	0			REV__ENSG00000118503|ENST00000612899|TNFAIP3	REV__ENSG00000118503|ENST00000612899|TNFAIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2624206542969	2	504.259879	1006.50521	-0.12382	-6.2438E-05	3.2552	0.0016415	3.1314	0.001579	504.2614183807475	70.93	0.72433	70.673	70.439	71.164	-0.25713					37	17	3	0	0	0	0.16468	1	8287	8287		96.19	13.95	1	1699600	+		65674	22410	46298	46364	70894	70894					0.002212898965012755
RCAMNSLPD	9	Unmodified	_RCAMNSLPD_					0	0	0		ENSG00000125347|ENST00000245414|IRF1;ENST00000459982.5_1_5:131821868-131826375:-|nuORF;ENST00000512020.5_1_4:185339662-185350218:-|nuORF;ENST00000472045.1_1_5:131822508-131823888:-|nuORF;nc|ENSG00000168310|P14316-2|IRF2;ENSG00000168310|ENST00000393593|IRF2	ENSG00000125347|ENST00000245414|IRF1	ENSG00000125347|ENST00000245414|IRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7632141113281	2	503.725869	1005.43719	-0.45926	-0.00023134	0.36599	0.00018436	-0.093271	-4.6983E-05	503.7260695863037	30.966	1.033	30.977	30.709	31.742	0.011797					30	24	2	0	0	0	0.024397	1	2069	2069		56.721	40.248	1	206650			65675	4096	46299	46365	70895	70895					-0.06531579754152972
RCCLWHGSL	9	Unmodified	_RCCLWHGSL_					0	0	0			REV__nc|ENSG00000185989|Q14644-2|RASA3	REV__nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7491455078125	2	537.752221	1073.48989	-0.36915	-0.00019851	-4.2111	-0.0022645	-4.5803	-0.0024631	537.7498307106357	76.111	0.90054	76.123	75.752	76.653	0.011642					59	22	3	0	0	0	0.6504	1	9302	9302		49.442	3.4693	1	1376400	+		65676	27820	46300	46366	70896	70896					-0.04391576900684413
RCEAPPAPNLL	11	Unmodified	_RCEAPPAPNLL_					0	0	0		ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.8088989257812	2	590.81079	1179.60703	0.77062	0.00045529	-4.0086	-0.0023683	-3.238	-0.001913	590.8083306486845	58.923	1.5797	59.009	58.63	60.21	0.085682					114	42	5	0	0	0	0.32544	1	6622	6622		87.696	5.4559	1	6117600			65677	2949	46301	46367	70897	70897					0.024408595199020056
RCEAPPAPNLL	11	Unmodified	_RCEAPPAPNLL_					0	0	0		ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.8096923828125	2	590.81079	1179.60703	-0.36544	-0.0002159	-2.6303	-0.001554	-2.9957	-0.0017699	590.8091828863319	59.192	1.964	59.01	58.187	60.151	-0.18134					96	49	4	0	0	0	0.43676	1	6521	6521		80.455	1.0036	1	9588600			65678	2949	46301	46367	70898	70898					0.024408595199020056
RCEDPNAPAI	10	Unmodified	_RCEDPNAPAI_					0	0	0		nc|ENSG00000084112|Q8WYL5-4|SSH1;ENSG00000084112|ENST00000326495|SSH1	nc|ENSG00000084112|Q8WYL5-4|SSH1	nc|ENSG00000084112|Q8WYL5-4|SSH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7980346679688	2	543.255848	1084.49714	-0.18919	-0.00010278	-4.3506	-0.0023635	-4.5398	-0.0024663	543.2533295606501	71.52	0.64825	71.313	71.051	71.699	-0.20613					35	15	3	0	0	0	0.03519	1	8399	8399		67.494	14.405	1	627800			65679	1767	46302	46368	70899	70899					-0.04172565819294505
RCEDRCEQ	8	Unmodified	_RCEDRCEQ_					0	0	0		ENSG00000145794|ENST00000503335|MEGF10;nc|ENSG00000145794|Q96KG7-2|MEGF10	ENSG00000145794|ENST00000503335|MEGF10	ENSG00000145794|ENST00000503335|MEGF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.82080078125	2	519.708208	1037.40186	-0.1543	-8.0189E-05	1.1351	0.00058992	0.98081	0.00050973	519.710061516273	80.79	0.19708	80.552	80.45	80.647	-0.23784					6	4	2	0	0	0	0.027866	1	9685	9685		40.573	12.69	1	56840			65680	5838	46303	46369	70900	70900					-0.11534242281982188
RCEGKGKGSL	10	Unmodified	_RCEGKGKGSL_					0	0	0		ENST00000455372.2_1_19:2736989-2737118:-|nuORF	ENST00000455372.2_1_19:2736989-2737118:-|nuORF	ENST00000455372.2_1_19:2736989-2737118:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.30078125	2	517.774208	1033.53386	-0.67644	-0.00035024	-1.3693	-0.00070897	-2.0457	-0.0010592	518.2756055143933	30.115	0.21635	29.937	29.824	30.04	-0.17817					5	4	2	0	0	0	0.03519	1	1889	1889		35.178	0	1	23336			65681	14579	46304	46370	70901	70901					0.01843730797304488
RCENKFLLC	9	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))ENKFLLC_	RC(1)ENKFLLC		RC(46)ENKFLLC(-46)		0	1	0			REV__ENSG00000139151|ENST00000266505|PLCZ1	REV__ENSG00000139151|ENST00000266505|PLCZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	591.7933349609375	2	591.791543	1181.56853	-0.30534	-0.0001807	3.3697	0.0019941	3.0643	0.0018134	591.7933780481969	19.24	0.57932	19.24	19.021	19.6	0					30	11	4	0	0	0	0.59099	1	391	391		53.351	16.905	2	199050	+		65682	23917	46305	46371	70902	70902	311				-0.014987693862622109
RCFCLLRID	9	Unmodified	_RCFCLLRID_					0	0	0		ENST00000374303.6_1_1:26158513-26158630:+|nuORF	ENST00000374303.6_1_1:26158513-26158630:+|nuORF	ENST00000374303.6_1_1:26158513-26158630:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.2766723632812	2	569.796629	1137.5787	-0.98334	-0.0005603	-3.7198	-0.0021195	-4.7031	-0.0026798	569.7937095494187	79.712	0.38069	79.712	79.447	79.828	0					11	8	2	0	0	0	0.024344	1	9879	9879		54.776	23.247	1	45542			65683	13109	46306	46372	70903	70903					0.015418383389715018
RCGPPSLNL	9	Unmodified	_RCGPPSLNL_					0	0	0		ENST00000532449.5_1_11:125495392-125495836:+|nuORF	ENST00000532449.5_1_11:125495392-125495836:+|nuORF	ENST00000532449.5_1_11:125495392-125495836:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	478.752744	955.490935	-1.4323	-0.00068569	0.20768	9.9426E-05	-1.2246	-0.00058627	478.752943874691	38.154	0.61264	38.181	37.849	38.462	0.027275					29	17	2	0	0	0	0.023274	1	3083	3083		58.23	0	1	328490			65684	16289	46307	46373	70904	70904					0.011409607398718435
RCKNGKKN	8	Unmodified	_RCKNGKKN_					0	0	0		ENST00000472839.6_1_12:92823387-92823534:+|nuORF	ENST00000472839.6_1_12:92823387-92823534:+|nuORF	ENST00000472839.6_1_12:92823387-92823534:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.28411865234375	2	474.26381	946.513068	-0.22587	-0.00010712	1.3018	0.00061738	1.0759	0.00051026	474.26404043916756	53.548	0.57982	53.401	53.06	53.639	-0.14723					22	15	2	0	0	0	0.027866	1	5794	5794		42.474	10.52	1	135160			65685	14994	46308	46374	70905	70905					0.03767185208300816
RCKQGDSL	8	Unmodified	_RCKQGDSL_					0	0	0			REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.7267761230469	2	453.726726	905.4389	-0.13361	-6.0623E-05	0.59219	0.00026869	0.45858	0.00020807	453.7268102554957	23.398	2.3771	23.474	22.793	25.17	0.076239					124	53	4	0	0	0	0.6248	1	896	896		73.975	2.679	1	492100	+		65686	20050	46309	46375	70906	70906					-0.017602026738927634
RCLEMNLQD	9	Unmodified	_RCLEMNLQD_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.2625732421875	2	561.257533	1120.50051	0.094098	5.2813E-05	1.7575	0.00098641	1.8516	0.0010392	561.7610281434395	87.67	0.51559	87.67	87.406	87.922	0					18	12	2	0	0	0	0.022832	1	11046	11046		71.877	18.941	1	89824			65687	3387	46310	46376	70907	70907					-0.054916390369044166
RCLEMNLQD	9	Unmodified	_RCLEMNLQD_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	561.257533	1120.50051	0.67294	0.00037769	-0.80403	-0.00045127	-0.13109	-7.3577E-05	561.25652652458	87.665	0.36792	87.684	87.388	87.756	0.018555	0.0069651	-0.0010643	NaN	71.877	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76623			65688	3387	46310	46376							-0.054916390369044166
RCLRRLRT	8	Unmodified	_RCLRRLRT_					0	0	0		ENST00000553935.5_1_14:24899298-24900051:+|nuORF;ENST00000556510.1_1_14:24899829-24900051:+|nuORF	ENST00000553935.5_1_14:24899298-24900051:+|nuORF	ENST00000553935.5_1_14:24899298-24900051:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7493896484375	2	537.327276	1072.64	-0.91511	-0.00049172	2.6268	0.0014114	1.7117	0.00091973	537.8320174431974	76.089	0.691	76.089	75.659	76.35	0					25	17	2	0	0	0	0.027866	1	9367	9367		60.972	6.1956	1	154730			65689	16648	46311	46377	70908	70908					0.10658531153285367
RCLSCVLIL	9	Carbamidomethyl (C)	_RCLSC(Carbamidomethyl (C))VLIL_	RCLSC(1)VLIL		RC(-72)LSC(72)VLIL		0	1	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.80078125	2	538.80138	1075.58821	-0.18504	-9.9701E-05	-2.285	-0.0012312	-2.47	-0.0013309	538.7998092728519	87.799	0.72147	87.799	87.491	88.212	0					27	17	2	0	0	0	0.028071	4	11061	11050;11061;11074;11087		143.11	44.478	2	1799200	+		65690	35563	46312	46378	70909;70910;70911;70912	70910	462				0.053436066245012626
RCLSCVLIL	9	Carbamidomethyl (C)	_RCLSC(Carbamidomethyl (C))VLIL_	RCLSC(1)VLIL		RC(-60)LSC(60)VLIL		0	1	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.2962036132812	2	538.80138	1075.58821	-0.18504	-9.9701E-05	-2.285	-0.0012312	-2.47	-0.0013309	538.7998092728519	87.799	0.72147	87.799	87.491	88.212	0					27	17	2	0	0	0	0.017891	1	11038	11038		120.62	17.848	2	1799200	+		65691	35563	46312	46378	70913	70913	462				0.053436066245012626
RCLSCVLIL	9	Carbamidomethyl (C)	_RCLSC(Carbamidomethyl (C))VLIL_	RCLSC(1)VLIL		RC(-66)LSC(66)VLIL		0	1	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8001708984375	2	538.80138	1075.58821	-0.077593	-4.1807E-05	-2.3795	-0.0012821	-2.457	-0.0013239	538.7997054203987	87.804	0.67743	87.769	87.489	88.167	-0.035362					33	16	3	0	0	0	0.082191	2	11016	11016;11028		116.9	20.713	2	1849800	+		65692	35563	46312	46378	70914;70915	70914	462				0.053436066245012626
RCLSCVLIL	9	Carbamidomethyl (C)	_RCLSC(Carbamidomethyl (C))VLIL_	RCLSC(1)VLIL		RC(-75)LSC(75)VLIL		0	1	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.7994384765625	2	538.80138	1075.58821	0.12626	6.8027E-05	-3.2376	-0.0017444	-3.1113	-0.0016764	538.7994419479146	87.772	0.72416	87.791	87.557	88.281	0.018555					30	17	2	0	0	0	0.015925	3	10974	10974;10986;10998		157.21	63.202	2	1953100	+		65693	35563	46312	46378	70916;70917;70918	70916	462				0.053436066245012626
RCLSCVLIL	9	Carbamidomethyl (C)	_RCLSC(Carbamidomethyl (C))VLIL_	RCLSC(1)VLIL		RC(-69)LSC(69)VLIL		0	1	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	538.8013916015625	2	538.80138	1075.58821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.84	1	87.661	87.161	88.161	-0.17875								0	0	0	0.020826	1	10684	10684		129.68	7.5066	2		+		65694	35563	46312	46378	70919	70919	462				0.053436066245012626
RCLSCVLIL	9	Carbamidomethyl (C)	_RCLSC(Carbamidomethyl (C))VLIL_	RCLSC(1)VLIL		RC(-72)LSC(72)VLIL		0	1	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8008422851562	2	538.80138	1075.58821	0.0041487	2.2353E-06	1.58	0.00085133	1.5842	0.00085357	538.8016496239434	87.804	0.63877	87.668	87.388	88.027	-0.13614					34	15	4	0	0	0	0.028071	1	10685	10685		143.11	26.203	2	1162300	+		65695	35563	46312	46378	70920	70920	462				0.053436066245012626
RCLSCVLIL	9	Carbamidomethyl (C)	_RCLSC(Carbamidomethyl (C))VLIL_	RCLSC(1)VLIL		RC(-78)LSC(78)VLIL		0	1	0			REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	REV__ENST00000584377.5_1_17:80211346-80211853:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.801025390625	2	538.80138	1075.58821	-0.76977	-0.00041475	2.7121	0.0014613	1.9423	0.0010465	538.8020676760879	87.877	0.48586	87.739	87.415	87.901	-0.13744					28	11	4	0	0	0	0.047345	2	10669	10669;10708		129.68	26.534	2	827220	+		65696	35563	46312	46378	70921;70922	70921	462				0.053436066245012626
RCLVWTLP	8	Unmodified	_RCLVWTLP_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.8157043457031	2	494.275855	986.537157	-0.080411	-3.9745E-05	3.3819	0.0016716	3.3015	0.0016319	494.27709427379887	67.04	0.82036	67.04	66.588	67.408	0					30	19	2	0	0	0	0.027866	1	7955	7955		13.775	6.085	1	472930	+		65697	34863	46313	46379	70923	70923					0.043350256419671496
RCMECYLY	8	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))MECYLY_	RC(0.997)MEC(0.003)YLY		RC(25)MEC(-25)YLY		0	1	0			REV__PRDM9|p.Q209R|1|0.54|ENSG00000164256|chr5:23522629-23522629|A/G|missense_variant	REV__PRDM9|p.Q209R|1|0.54|ENSG00000164256|chr5:23522629-23522629|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.231689453125	2	569.22993	1136.44531	0.247	0.0001406	2.571	0.0014635	2.818	0.0016041	569.2312497963704	76.549	0.99852	76.297	75.944	76.943	-0.25162					63	23	4	0	0	0	0.78609	1	9125	9125		60.294	7.3573	2	3960500	+		65698	37401	46314	46380	70924	70924	482				-0.11745768829041481
RCMIHYSDK	9	Unmodified	_RCMIHYSDK_					0	0	0			REV__ENSG00000155621|ENST00000334731|C9orf85	REV__ENSG00000155621|ENST00000334731|C9orf85	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2981567382812	2	576.768068	1151.52158	-0.20862	-0.00012033	-0.51367	-0.00029627	-0.72229	-0.0004166	576.7662619766464	92.839	0.25101	92.695	92.534	92.785	-0.14411					8	5	2	0	0	0	0.024511	1	11378	11378		40.778	21.675	1	41028	+		65699	25014	46315	46381	70925	70925					-0.048116289373865584
RCPNKGAQLDP	11	Unmodified	_RCPNKGAQLDP_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.584228515625	3	400.204757	1197.59244	0.13073	5.2317E-05	-1.6412	-0.00065682	-1.5105	-0.00060451	400.203701291754	25.724	1.2487	25.497	24.708	25.957	-0.22683					82	29	5	0	0	0	0.024747	1	1219	1219		21.78	0	1	3056700			65700	8798	46316	46382	70926	70926					0.0015478737177545554
RCPVGVCRC	9	2 Carbamidomethyl (C)	_RCPVGVC(Carbamidomethyl (C))RC(Carbamidomethyl (C))_	RCPVGVC(1)RC(1)		RC(-41)PVGVC(41)RC(46)		0	2	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|277|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|277|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.755859375	2	553.754438	1105.49432	0.61112	0.00033841	1.7182	0.00095146	2.3293	0.0012899	553.755334147411	22.588	2.6047	22.386	22.097	24.702	-0.20199					99	58	4	0	0	0	0.59099	1	797	797		53.351	16.905	3	1088400	+		65701	36237	46317	46383	70927	70927	468;469				-0.05420435749419994
RCQLRTHCP	9	Unmodified	_RCQLRTHCP_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.3226318359375	2	557.273852	1112.53315	-1.4611	-0.00081423	3.2441	0.0018078	1.783	0.0009936	557.2768097890099	28.835	0.64817	28.589	28.363	29.011	-0.24524					25	14	3	0	0	0	0.023239	1	1759	1759		74.255	0	1	41057			65702	4467	46318	46384	70928	70928					-0.018613871234038015
RCQPCTFQG	9	Unmodified	_RCQPCTFQG_					0	0	0			REV__ENST00000503005.1_1_5:180684052-180687322:-|nuORF	REV__ENST00000503005.1_1_5:180684052-180687322:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2633056640625	2	520.226036	1038.43752	-0.50287	-0.00026161	3.3117	0.0017228	2.8088	0.0014612	520.729005622291	57.563	0.18852	57.329	57.274	57.463	-0.23363					5	4	2	0	0	0	0.024457	1	6274	6274		21.96	0	1	56358	+		65703	27599	46319	46385	70929	70929					-0.08016160034298991
RCQRLYPTLK	10	Unmodified	_RCQRLYPTLK_					0	0	0			REV__ENSG00000100065|ENST00000251973|CARD10	REV__ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	639.3624267578125	2	639.360982	1276.70741	1.7487	0.0011181	1.7379	0.0011112	3.4867	0.0022292	639.3619295594426	109.95	0.62169	109.95	109.73	110.35	0					69	21	5	0	0	0	1.1197	1	14005	14005		20.947	0	1	2552900	+		65704	21042	46320	46386	70930	70930					0.08012516573580797
RCQVELKM	8	Unmodified	_RCQVELKM_					0	0	0			REV__ENST00000460022.6_2_7:155435651-155436262:-|nuORF	REV__ENST00000460022.6_2_7:155435651-155436262:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.76409912109375	2	503.762255	1005.50996	-0.47699	-0.00024029	3.0186	0.0015207	2.5416	0.0012804	503.76372654336416	34.998	1.4219	34.786	34.196	35.618	-0.21246					102	35	5	0	0	0	0.56067	1	2644	2644		79.939	14.136	1	18675000	+		65705	32840	46321	46387	70931	70931					0.007421740392715037
RCQVELKM	8	Unmodified	_RCQVELKM_					0	0	0			REV__ENST00000460022.6_2_7:155435651-155436262:-|nuORF	REV__ENST00000460022.6_2_7:155435651-155436262:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.76397705078125	2	503.762255	1005.50996	-0.71814	-0.00036177	3.3591	0.0016922	2.6409	0.0013304	503.7639138497815	34.926	1.2108	34.74	34.241	35.452	-0.18675					95	30	5	0	0	0	0.68535	1	2578	2578		68.485	8.1907	1	21083000	+		65706	32840	46321	46387	70932	70932					0.007421740392715037
RCRSQEAKCG	10	Unmodified	_RCRSQEAKCG_					0	0	0			REV__ENST00000596981.1_1_19:49311427-49311520:-|nuORF	REV__ENST00000596981.1_1_19:49311427-49311520:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.26708984375	2	569.266224	1136.5179	0.31757	0.00018078	2.0104	0.0011445	2.328	0.0013253	569.2673127638058	23.413	2.6043	23.212	21.231	23.835	-0.20193					194	56	4	0	0	0	0.64538	1	828	828		71.877	0.58177	1	2615500	+		65707	35797	46322	46388	70933	70933					-0.04490298711266405
RCRWCCDTW	9	Unmodified	_RCRWCCDTW_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	614.7406005859375	2	614.74407	1227.47359	-0.96546	-0.00059351	-2.8474	-0.0017504	-3.8128	-0.0023439	614.7422004324334	72.496	0.89474	72.219	71.947	72.842	-0.2769					43	20	4	0	0	0	0.59099	1	8496	8496		53.351	0.41475	1	717000	+		65708	19310	46323	46389	70934	70934					-0.13105026129096586
RCRWCCDTW	9	Unmodified	_RCRWCCDTW_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	614.7409057617188	2	614.74407	1227.47359	-0.26903	-0.00016538	-3.5965	-0.002211	-3.8656	-0.0023763	614.741693684511	72.565	0.76577	72.3	72.001	72.767	-0.26479					42	17	4	0	0	0	0.31247	1	8511	8511		73.975	22.639	1	666440	+		65709	19310	46323	46389	70935	70935					-0.13105026129096586
RCRWCCDTW	9	Unmodified	_RCRWCCDTW_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	614.74407	1227.47359	-0.96546	-0.00059351	-2.8474	-0.0017504	-3.8128	-0.0023439	614.7422004324334	72.496	0.89474	72.219	71.947	72.842	-0.2769	-0.0023424	0.00046731	NaN	73.975	43	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717000	+		65710	19310	46323	46389							-0.13105026129096586
RCRWCCDTW	9	Unmodified	_RCRWCCDTW_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	614.74407	1227.47359	-0.26903	-0.00016538	-3.5965	-0.002211	-3.8656	-0.0023763	614.741693684511	72.565	0.76577	72.3	72.001	72.767	-0.26479	0.078626	-0.00045381	NaN	73.975	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666440	+		65711	19310	46323	46389							-0.13105026129096586
RCRWCCDTW	9	Unmodified	_RCRWCCDTW_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	614.74407	1227.47359	-0.62834	-0.00038627	-3.2587	-0.0020033	-3.887	-0.0023895	614.7418325897904	72.344	0.63033	72.145	71.909	72.539	-0.19811	-0.076284	-3.8457E-05	NaN	73.975	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	769830	+		65712	19310	46323	46389							-0.13105026129096586
RCSGCNLCLPS	11	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SGCNLC(Carbamidomethyl (C))LPS_	RC(0.991)SGC(0.182)NLC(0.828)LPS		RC(20)SGC(-6.8)NLC(6.8)LPS		0	2	0			REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.7705078125	2	633.773025	1265.5315	-1.4607	-0.00092575	-2.5028	-0.0015862	-3.9635	-0.0025119	633.7713810639166	69.566	0.87842	69.299	69.037	69.916	-0.26725					48	20	4	0	0	0	0.849	1	8075	8075		54.722	10.345	3	985390	+		65713	37048	46324	46390	70936	70936	479;480				-0.09064808994321538
RCSGCNLCLPS	11	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SGCNLC(Carbamidomethyl (C))LPS_					0	2	0			REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	633.773025	1265.5315	0.091847	5.821E-05	-3.7077	-0.0023498	-3.6159	-0.0022916	633.770538661191	69.066	0.83482	69.066	68.754	69.588	0	-0.11944	-1.6592E-05	NaN	54.722	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1219000	+		65714	37048	46324	46390			479;480				-0.09064808994321538
RCSGCNLCLPS	11	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SGCNLC(Carbamidomethyl (C))LPS_					0	2	0			REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	633.773025	1265.5315	1.1215	0.00071079	-4.8	-0.0030421	-3.6785	-0.0023313	633.7698682521772	69.403	0.84822	69.11	68.825	69.673	-0.29291	-0.07562	-0.0014011	NaN	54.722	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1289000	+		65715	37048	46324	46390			479;480				-0.09064808994321538
RCSGCNLCLPS	11	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SGCNLC(Carbamidomethyl (C))LPS_					0	2	0			REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	633.773025	1265.5315	-0.4675	-0.00029629	-3.4617	-0.0021939	-3.9292	-0.0024902	633.7707213965745	69.118	0.76432	69.133	68.865	69.629	0.015121	-0.052415	0.00029526	NaN	54.722	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1175300	+		65716	37048	46324	46390			479;480				-0.09064808994321538
RCSGCNLCLPS	11	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SGCNLC(Carbamidomethyl (C))LPS_					0	2	0			REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	633.773025	1265.5315	-1.4607	-0.00092575	-2.5028	-0.0015862	-3.9635	-0.0025119	633.7713810639166	69.566	0.87842	69.299	69.037	69.916	-0.26725	0.11278	0.0015107	NaN	54.722	48	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985390	+		65717	37048	46324	46390			479;480				-0.09064808994321538
RCSGCNLCLPS	11	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SGCNLC(Carbamidomethyl (C))LPS_					0	2	0			REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	633.773025	1265.5315	-0.2795	-0.00017714	-3.5934	-0.0022774	-3.8729	-0.0024545	633.7707195742518	69.505	0.99182	69.254	68.95	69.942	-0.25063	0.068286	0.00012828	NaN	54.722	52	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158800	+		65718	37048	46324	46390			479;480				-0.09064808994321538
RCSGCNLCLPS	11	2 Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SGCNLC(Carbamidomethyl (C))LPS_					0	2	0			REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	REV__nc|ENSG00000196166|Q6ZUL3|LINC03042	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	633.773025	1265.5315	-0.40773	-0.00025841	-3.4954	-0.0022153	-3.9031	-0.0024737	633.7707767107743	69.475	0.78581	69.252	68.978	69.764	-0.22245	0.066404	0.00025254	NaN	54.722	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1086400	+		65719	37048	46324	46390			479;480				-0.09064808994321538
RCSLTCAFVSE	11	Unmodified	_RCSLTCAFVSE_					0	0	0			REV__ENST00000535947.5_2_11:71751661-71751754:-|nuORF	REV__ENST00000535947.5_2_11:71751661-71751754:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.8999938964844	3	405.854736	1214.54238	0.4593	0.00018641	-0.05072	-2.0585E-05	0.40858	0.00016583	405.8549769782702	24.151	0.48406	23.936	23.733	24.218	-0.2151					16	10	2	0	0	0	0.024751	1	1003	1003		21.78	0	1	40290	+		65720	34681	46325	46391	70937	70937					-0.056310833484076284
RCSLTCAFVSE	11	Unmodified	_RCSLTCAFVSE_					0	0	0			REV__ENST00000535947.5_2_11:71751661-71751754:-|nuORF	REV__ENST00000535947.5_2_11:71751661-71751754:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	405.854736	1214.54238	0.5242	0.00021275	-0.29964	-0.00012161	0.22456	9.1139E-05	405.85452754990064	23.968	0.39518	23.788	23.607	24.002	-0.17989	-0.074088	-7.6959E-05	NaN	21.78	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60056	+		65721	34681	46325	46391							-0.056310833484076284
RCSRLVPV	8	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SRLVPV_	RC(1)SRLVPV		RC(85)SRLVPV		0	1	0			REV__ZNF773|p.A199Pfs*41|1|0.29|ENSG00000152439|chr19:57506687-57506687|A/-|frameshift_variant	REV__ZNF773|p.A199Pfs*41|1|0.29|ENSG00000152439|chr19:57506687-57506687|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7832336425781	2	493.781836	985.549119	0.55373	0.00027342	-0.2151	-0.00010621	0.33863	0.00016721	493.77974451829857	58.255	1.2768	58.255	58.056	59.333	0					70	34	3	0	0	0	0.50239	3	6574	6574;6584;6595		85.359	11.385	1	15998000	+		65722	24839	46326	46392	70938;70939;70940	70938	326				0.05576642385165087
RCSRLVPVR	9	Unmodified	_RCSRLVPVR_					0	0	0			REV__ZNF773|p.A199Pfs*41|1|0.29|ENSG00000152439|chr19:57506687-57506687|A/-|frameshift_variant	REV__ZNF773|p.A199Pfs*41|1|0.29|ENSG00000152439|chr19:57506687-57506687|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.796142578125	2	543.32166	1084.62877	0.13739	7.4647E-05	2.8189	0.0015316	2.9563	0.0016062	543.322421985275	72.267	1.1765	72.003	71.719	72.896	-0.26344					68	27	5	0	0	0	0.024344	1	8437	8437		64.207	14.766	1	1038400	+		65723	24839	46327	46393	70941	70941					0.08983709059157263
RCVAPLSRS	9	Unmodified	_RCVAPLSRS_					0	0	0			REV__ENST00000253107.11_2_19:10217231-10218202:+|nuORF	REV__ENST00000253107.11_2_19:10217231-10218202:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.77178955078125	2	494.771468	987.528384	-0.32119	-0.00015892	0.3171	0.00015689	-0.0040951	-2.0261E-06	494.7714808289567	22.537	1.9539	22.461	21.418	23.372	-0.075296					95	42	3	0	0	0	0.77768	1	784	784		40.778	7.9657	1	306300	+		65724	29518	46328	46394	70942	70942					0.03412052005478472
RCYCMTDDK	9	Unmodified	_RCYCMTDDK_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-5|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-16|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7348022460938	2	567.722469	1133.43039	0.63748	0.00036191	-0.7095	-0.0004028	-0.072019	-4.0887E-05	567.7211951966544	59.42	0.43854	59.239	59.072	59.511	-0.18134					17	10	2	0	0	0	0.024541	1	6553	6553		17.365	12.459	1	130910			65725	18041	46329	46395	70943	70943					-0.1309926069704943
RCYSCSEPH	9	Unmodified	_RCYSCSEPH_					0	0	0			REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.2896728515625	2	541.213126	1080.4117	-0.2696	-0.00014591	2.6005	0.0014074	2.3309	0.0012615	541.2144520773104	18.133	0.39252	18.002	17.762	18.154	-0.13148					11	7	2	0	0	0	0.024515	1	255	255		35.152	15.155	1	16290	+		65726	24720	46330	46396	70944	70944					-0.12529054276569696
RCYWSYFVRSH	11	Unmodified	_RCYWSYFVRSH_					0	0	0		ENST00000369707.2_1_10:106037758-106039140:+|nuORF	ENST00000369707.2_1_10:106037758-106039140:+|nuORF	ENST00000369707.2_1_10:106037758-106039140:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.80035400390625	3	501.903189	1502.68774	-0.99201	-0.00049789	2.082	0.0010449	1.09	0.00054705	501.9048962265142	46.54	0.13611	46.387	46.309	46.445	-0.15301					5	3	2	0	0	0	0.024869	1	4591	4591		3.4087	0	1	31165			65727	12932	46331	46397	70945	70945					-0.0434985943720676
RDAEANQLKEE	11	Unmodified	_RDAEANQLKEE_					0	0	0		CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.L1401Yfs*3|1|0.8|ENSG00000119397|chr9:121154742-121154743|TG/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	CNTRL|p.K1607Rfs*22|1|0.24|ENSG00000119397|chr9:121158906-121158906|A/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-2	2	434.8835144042969	3	434.880996	1301.62116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.83	1	110.82	110.32	111.32	-0.011299								0	0	0	1.4681	1	13980	13980		17.167	3.0807	1				65728	464	46332	46398	70946	70946					-0.017588165180768556
RDALFIFL	8	Unmodified	_RDALFIFL_					0	0	0			REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2685852050781	2	497.789653	993.564752	-0.67877	-0.00033789	-3.0388	-0.0015127	-3.7176	-0.0018506	497.7877407249923	34.746	0.52896	34.724	34.593	35.122	-0.021767					23	13	3	0	0	0	0.027866	1	2638	2638		71.378	4.9486	1	213240	+		65729	36951	46333	46399	70947	70947					0.06771252173825815
RDALFIFL	8	Unmodified	_RDALFIFL_					0	0	0			REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.26837158203125	2	497.789653	993.564752	-0.47988	-0.00023888	-2.5972	-0.0012929	-3.0771	-0.0015317	497.788348807433	34.842	0.54871	34.892	34.762	35.311	0.050255					19	14	2	0	0	0	0.027866	1	2615	2615		60.294	3.5729	1	232410	+		65730	36951	46333	46399	70948	70948					0.06771252173825815
RDAQRQPSP	9	Unmodified	_RDAQRQPSP_					0	0	0			REV__nc|ENSG00000173818|Q8N8Q3-6|ENDOV	REV__nc|ENSG00000173818|Q8N8Q3-6|ENDOV	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7715454101562	2	527.773054	1053.53155	-0.7	-0.00036944	-2.6728	-0.0014106	-3.3728	-0.0017801	527.7716393385501	56.233	1.495	56.018	55.136	56.631	-0.21551					61	39	2	0	0	0	0.024374	1	6000	6000		32.812	8.6097	1	429440	+		65731	36950	46334	46400	70949	70949					0.006930183838449011
RDAQRQPSP	9	Unmodified	_RDAQRQPSP_					0	0	0			REV__nc|ENSG00000173818|Q8N8Q3-6|ENDOV	REV__nc|ENSG00000173818|Q8N8Q3-6|ENDOV	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.773054	1053.53155	-0.15299	-8.0742E-05	-3.2486	-0.0017145	-3.4016	-0.0017953	527.771129607602	56.024	1.6759	55.808	54.906	56.582	-0.21607	-0.10503	-0.0003149	NaN	37.812	73	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463810	+		65732	36950	46334	46400							0.006930183838449011
RDASTKMQG	9	Unmodified	_RDASTKMQG_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.26837158203125	2	497.242741	992.470928	-0.31136	-0.00015482	-3.4793	-0.00173	-3.7906	-0.0018849	497.2422926169457	35.193	0.21936	35.237	35.085	35.305	0.044056					8	5	2	0	0	0	0.024181	1	2615	2615		63.534	17.562	1	48758			65733	3629	46335	46401	70950	70950					-0.025608349907315642
RDASTTQLGFS	11	Unmodified	_RDASTTQLGFS_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.79296875	2	591.791109	1181.56767	2.7959	0.0016546	1.1438	0.00067691	3.9397	0.0023315	591.791655660008	19.447	0.72739	19.513	19.242	19.969	0.066195					27	14	3	0	0	0	1.0465	1	385	385		26.063	2.5407	1	161290	+		65734	20141	46336	46402	70951	70951					-0.015855692299510338
RDATTRESCV	10	Unmodified	_RDATTRESCV_					0	0	0			REV__nc|ENSG00000075413|P27448-8|MARK3	REV__nc|ENSG00000075413|P27448-8|MARK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2677612304688	2	569.269487	1136.52442	0.31757	0.00018078	-3.7208	-0.0021181	-3.4032	-0.0019373	569.2673127638058	23.413	2.6043	23.212	21.231	23.835	-0.20193					194	56	4	0	0	0	0.62431	3	948	911;948;996		74.255	29.724	1	2615500	+		65735	20548	46337	46403	70952;70953;70954	70953					-0.038380822788894875
RDCERAAII	9	Unmodified	_RDCERAAII_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.7756958007812	2	523.774208	1045.53386	-0.93771	-0.00049115	0.031718	1.6613E-05	-0.90599	-0.00047453	523.7741567924857	85.942	1.2294	85.965	85.45	86.68	0.023666					46	28	2	0	0	0	0.56934	1	10740	10740		54.776	1.4249	1	3865400	+		65736	28676	46338	46404	70955	70955					0.012917307972884373
RDCSCGAKSC	10	Unmodified	_RDCSCGAKSC_					0	0	0		ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7545776367188	2	515.199161	1028.38377	-0.48026	-0.00024743	-3.0364	-0.0015643	-3.5167	-0.0018118	515.1974033199854	27.569	0.4465	27.556	27.314	27.761	-0.012983					18	11	2	0	0	0	0.03519	1	1487	1487		28.081	9.7571	1	97561			65737	7845	46339	46405	70956	70956					-0.12928700528323134
RDCSCGAKSC	10	Unmodified	_RDCSCGAKSC_					0	0	0		ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.199161	1028.38377	-0.77369	-0.0003986	-2.7507	-0.0014171	-3.5243	-0.0018157	515.1976327416147	27.599	0.52162	27.599	27.323	27.844	0	0.12185	-0.00029892	NaN	28.081	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131330			65738	7845	46339	46405							-0.12928700528323134
RDCSCGAKSC	10	Unmodified	_RDCSCGAKSC_					0	0	0		ENSG00000168615|ENST00000487273|ADAM9;nc|ENSG00000168615|Q13443-2|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	ENSG00000168615|ENST00000487273|ADAM9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.199161	1028.38377	-1.4326	-0.00073808	-1.7116	-0.0008818	-3.1442	-0.0016199	515.1982695275494	27.195	0.39783	27.276	27.1	27.498	0.081291	-0.20078	0.00077174	NaN	28.081	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108640			65739	7845	46339	46405							-0.12928700528323134
RDEFAVVSNL	10	Unmodified	_RDEFAVVSNL_					0	0	0		ENST00000471391.1_1_1:51926726-51984921:-|nuORF	ENST00000471391.1_1_1:51926726-51984921:-|nuORF	ENST00000471391.1_1_1:51926726-51984921:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8428344726562	2	575.29857	1148.58259	-0.36919	-0.00021239	-0.60397	-0.00034746	-0.97316	-0.00055986	575.7995556382856	88.488	1.2293	88.317	87.855	89.084	-0.17054					55	29	3	0	0	0	0.03519	1	10822	10822		75.043	25.602	1	297630			65740	14957	46340	46406	70957	70957					0.014239226380595937
RDENKRTHND	10	Unmodified	_RDENKRTHND_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	642.8021240234375	2	642.805614	1283.59667	-1.6096	-0.0010347	-3.7287	-0.0023968	-5.3383	-0.0034315	642.8031472129575	36.904	0.8546	36.711	36.414	37.269	-0.193					63	21	4	0	0	0	0.98754	1	2930	2930		47.657	24.135	1	2074600			65741	1995	46341	46407	70958	70958					-0.03378031880947674
RDERDAKAM	9	Unmodified	_RDERDAKAM_					0	0	0		nc|ENSG00000152270|Q13370-2|PDE3B;ENSG00000152270|ENST00000282096|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2655029296875	2	546.266747	1090.51894	-0.38931	-0.00021267	-2.5983	-0.0014194	-2.9876	-0.001632	546.265362993697	26.053	1.6161	25.885	25.7	27.317	-0.16816					110	41	4	0	0	0	0.75397	1	1326	1326		42.396	0.96952	1	25118000			65742	6264	46342	46408	70959	70959					-0.022697610706927662
RDEREGCL	8	Unmodified	_RDEREGCL_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.27056884765625	2	489.227091	976.439628	-0.57869	-0.00028311	-4.4744	-0.002189	-5.0531	-0.0024721	489.2229678938781	38.908	0.3524	38.81	38.665	39.018	-0.098751					21	9	3	0	0	0	0.027866	1	3295	3295		34.173	0	1	112250	+		65743	19944	46343	46409	70960	70960					-0.0495340802484634
RDERKNPD	8	Unmodified	_RDERKNPD_					0	0	0		ENST00000371870.3_1_1:47799617-47838812:+|nuORF;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	ENST00000371870.3_1_1:47799617-47838812:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.281982421875	2	515.257237	1028.49992	-0.68834	-0.00035467	0.90009	0.00046378	0.21175	0.00010911	515.7602612344509	65.328	0.73782	65.328	64.983	65.721	0					23	20	2	0	0	0	0.027866	1	7769	7769		38.806	0	1	1482700			65744	6929	46344	46410	70961	70961					-0.013189743701104817
RDERSDSRA	9	Unmodified	_RDERSDSRA_					0	0	0		ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	ENSG00000106263|ENST00000360876|EIF3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2649536132812	2	546.26305	1090.51155	-0.38931	-0.00021267	4.1691	0.0022774	3.7798	0.0020648	546.265362993697	26.053	1.6161	25.885	25.7	27.317	-0.16816					110	41	4	0	0	0	0.70156	1	1300	1300		45.972	6.7194	1	25118000			65745	2771	46345	46411	70962	70962					-0.030087773467585066
RDFAKNKNKE	10	Unmodified	_RDFAKNKNKE_					0	0	0		ENST00000542074.1_1_11:61197581-61213540:+|nuORF;ENSG00000167985|ENST00000301761|SDHAF2	ENST00000542074.1_1_11:61197581-61213540:+|nuORF	ENST00000542074.1_1_11:61197581-61213540:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8916015625	3	417.226438	1248.65748	-0.884	-0.00036883	-1.2638	-0.0005273	-2.1478	-0.00089613	417.2259543931952	33.59	1.2207	33.424	32.879	34.099	-0.16565					78	30	4	0	0	0	0.03519	1	2385	2385		75.566	1.4007	1	2885200			65746	7762	46346	46412	70963	70963					0.04310105169247436
RDFFYENRERD	11	Unmodified	_RDFFYENRERD_					0	0	0			REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.297119140625	3	516.239294	1545.69605	-0.73154	-0.00037765	1.0702	0.00055248	0.33866	0.00017483	516.239583222203	26.766	0.90098	26.53	26.268	27.169	-0.23603					31	21	3	0	0	0	0.024856	1	1441	1441		20.315	3.1483	1	534620	+		65747	26548	46347	46413	70964	70964					-0.05496633986854249
RDFLKTVLH	9	Unmodified	_RDFLKTVLH_					0	0	0		nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	MSMS	OPSCC_39_ClassI_Rep-1	1	564.8327026367188	2	564.82984	1127.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.254	1	17.254	16.754	17.754	0								0	0	0	0.64206	1	145	145		32.812	3.6629	1				65748	1327	46348	46414	70965	70965					0.08641113496878461
RDFVFWRKKW	10	Unmodified	_RDFVFWRKKW_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1;REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.802734375	3	489.938451	1466.79352	-0.085522	-4.19E-05	-3.2205	-0.0015779	-3.3061	-0.0016198	489.9367169498192	17.535	0.29841	17.329	17.166	17.464	-0.20669					8	5	2	0	0	0	0.03519	1	174	174		20.837	11.191	1	23299	+		65749	19984;24366	46349	46415	70966	70966					0.0787984447058534
RDGLAKVMI	9	Unmodified	_RDGLAKVMI_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7893371582031	2	501.791869	1001.56919	-0.029005	-1.4554E-05	-4.3394	-0.0021775	-4.3684	-0.002192	501.78945139541014	99.581	0.6451	99.591	99.223	99.869	0.010239					32	14	3	0	0	0	0.39228	1	12709	12709		66.429	8.618	1	537450	+		65750	22316	46350	46416	70967	70967					0.06846393325110967
RDGPIIVW	8	Unmodified	_RDGPIIVW_					0	0	0			REV__ENST00000465269.5_1_X:48660634-48660790:+|nuORF	REV__ENST00000465269.5_1_X:48660634-48660790:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.26904296875	2	478.271627	954.528701	0.27614	0.00013207	-4.0016	-0.0019138	-3.7254	-0.0017818	478.2696960327596	101.37	0.55611	101.2	100.92	101.47	-0.17178					28	11	3	0	0	0	1.0338	1	12578	12578		31.955	3.8734	1	365670	+		65751	32913	46351	46417	70968	70968					0.0496179499699565
RDGRRRQCA	9	Unmodified	_RDGRRRQCA_					0	0	0		ENST00000359236.9_1_12:118533588-118541507:-|nuORF	ENST00000359236.9_1_12:118533588-118541507:-|nuORF	ENST00000359236.9_1_12:118533588-118541507:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3357543945312	2	559.291422	1116.56829	0.27239	0.00015234	-1.0221	-0.00057164	-0.74969	-0.00041929	559.290820816114	19.332	0.34669	19.171	19.034	19.381	-0.16079					9	6	2	0	0	0	0.024511	1	425	425		32.812	6.0163	1	24198			65752	12731	46352	46418	70969	70969					0.014669917287619683
RDIDAKSKK	9	Unmodified	_RDIDAKSKK_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8095092773438	2	530.809105	1059.60366	1.03	0.00054673	-0.35388	-0.00018784	0.67611	0.00035888	530.8089811467206	17.637	1.0901	17.483	17.159	18.249	-0.15403					54	21	5	0	0	0	0.6504	1	208	208		49.442	0	1	2530100			65753	5297	46353	46419	70970	70970					0.0762393273755606
RDINRFLSV	9	Unmodified	_RDINRFLSV_					0	0	0		ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3168334960938	2	560.317097	1118.61964	-0.26369	-0.00014775	-0.45498	-0.00025493	-0.71868	-0.00040269	560.3167984893639	47.429	0.80977	47.332	47.046	47.856	-0.096653					65	21	5	0	0	0	0.54416	1	4639	4639		56.434	5.0983	1	5743400			65754	2922	46354	46420	70971	70971					0.06507638974449037
RDKEKKNNP	9	Unmodified	_RDKEKKNNP_					0	0	0		nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141|SEPTIN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.2965087890625	2	564.809636	1127.60472	-0.42184	-0.00023826	1.7254	0.0009745	1.3035	0.00073624	564.810211620746	103.96	0.61134	103.96	103.77	104.38	-0.0032196					22	14	2	0	0	0	0.024541	1	13238	13238		25.574	6.4705	1	49171			65755	18243	46355	46421	70972	70972					0.04602147106470511
RDKELLFV	8	Unmodified	_RDKELLFV_					0	0	0			REV__nc|ENSG00000051596|Q96J01-2|THOC3	REV__nc|ENSG00000051596|Q96J01-2|THOC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2743835449219	2	510.297842	1018.58113	-0.42401	-0.00021637	-0.52181	-0.00026628	-0.94582	-0.00048265	510.29787401735143	75.391	0.82195	75.132	74.695	75.517	-0.25866					34	19	3	0	0	0	0.027866	1	8960	8960		42.396	0	1	179980	+		65756	20168	46356	46422	70973	70973					0.07258333339962064
RDKLDMPKEW	10	Oxidation (M)	_RDKLDM(Oxidation (M))PKEW_		RDKLDM(1)PKEW		RDKLDM(57)PKEW	0	0	1			REV__ENSG00000176769|ENST00000368642|TCERG1L	REV__ENSG00000176769|ENST00000368642|TCERG1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.22503662109375	3	445.223817	1332.64962	-0.77745	-0.00034614	2.8501	0.0012689	2.0726	0.00092278	445.2251576325834	30.318	1.7449	30.139	29.782	31.527	-0.17817					106	42	4	0	0	0	0.85308	1	1936	1936		57.149	21.653	1	7976100	+		65757	27044	46357	46423	70974	70974		804			-0.0033979014253873174
RDKQMKQRRRK	11	Unmodified	_RDKQMKQRRRK_					0	0	0			REV__SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	REV__SMARCA4|p.R521Vfs*93|1|0.12|ENSG00000127616|chr19:10994968-10994969|-/GT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.6355285644531	3	510.635437	1528.88448	0.040541	2.0702E-05	-2.5039	-0.0012786	-2.4634	-0.0012579	510.63400900848177	101.96	1.5186	101.83	100.98	102.5	-0.12666					101	36	4	0	0	0	1.0648	1	12728	12728		21.032	14.711	1	138840	+		65758	37515	46358	46424	70975	70975					0.14119365176406973
RDLAEGIPL	9	Unmodified	_RDLAEGIPL_					0	0	0			REV__ENSG00000198265|ENST00000358691|HELZ	REV__ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7961120605469	2	492.279649	982.544745	0.39977	0.0001968	0.91451	0.00045019	1.3143	0.00064699	492.2799508040723	54.263	1.0856	54.066	53.827	54.912	-0.19739					44	29	3	0	0	0	0.024319	1	5875	5875		39.253	5.0803	1	1004300	+		65759	28406	46359	46425	70976	70976					0.05277456443241135
RDLCLSSF	8	Carbamidomethyl (C)	_RDLC(Carbamidomethyl (C))LSSF_	RDLC(1)LSSF		RDLC(62)LSSF		0	1	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7899475097656	2	499.242209	996.469866	-0.43001	-0.00021468	-0.41212	-0.00020575	-0.84213	-0.00042043	499.24187128428997	29.335	0.51607	29.413	29.091	29.607	0.078344					16	12	2	0	0	0	0.027866	1	1729	1729		62.107	19.711	1	65453	+		65760	21703	46360	46426	70977	70977	277				-0.02851049359640001
RDLLHPAR	8	Unmodified	_RDLLHPAR_					0	0	0			REV__SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|73|3|anti-sense	REV__SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|73|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.27044677734375	2	489.2856	976.556647	-0.47506	-0.00023244	-3.5187	-0.0017217	-3.9938	-0.0019541	489.2845290494068	38.661	0.19213	38.562	38.437	38.629	-0.098755					6	4	2	0	0	0	0.027866	1	3250	3250		34.173	5.023	1	65611	+		65761	37653	46361	46427	70978	70978					0.06743117977077873
RDLMKTAL	8	Unmodified	_RDLMKTAL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.27032470703125	2	474.27077	946.526987	0.33933	0.00016094	-0.1286	-6.0993E-05	0.21073	9.9942E-05	474.27076014061646	24.034	0.62833	24.112	23.736	24.364	0.078196					39	13	4	0	0	0	0.77775	1	948	948		60.972	0	1	2335100			65762	1982	46362	46428	70979	70979					0.05158417916720737
RDNLFRVVT	9	Unmodified	_RDNLFRVVT_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3172607421875	2	560.317097	1118.61964	-0.26369	-0.00014775	-0.45498	-0.00025493	-0.71868	-0.00040269	560.3167984893639	47.429	0.80977	47.332	47.046	47.856	-0.096653					65	21	5	0	0	0	0.54416	2	4650	4650;4663		56.434	8.6069	1	5743400	+		65763	23585	46363	46429	70980;70981	70980					0.06507638974449037
RDNLFRVVT	9	Unmodified	_RDNLFRVVT_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3171997070312	2	560.317097	1118.61964	-0.14916	-8.3576E-05	-0.4883	-0.0002736	-0.63746	-0.00035718	560.3167646189008	47.733	0.96075	47.457	47.044	48.004	-0.27598					68	25	5	0	0	0	0.54416	2	4661	4661;4672		56.434	13.684	1	5871700	+		65764	23585	46363	46429	70982;70983	70982					0.06507638974449037
RDNLFRVVT	9	Unmodified	_RDNLFRVVT_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3172607421875	2	560.317097	1118.61964	-0.16113	-9.0283E-05	-0.40505	-0.00022696	-0.56618	-0.00031724	560.3168165599787	47.539	0.89421	47.352	46.93	47.825	-0.18684					64	23	4	0	0	0	0.6238	3	4675	4649;4661;4675		51.193	10.415	1	5464100	+		65765	23585	46363	46429	70984;70985;70986	70986					0.06507638974449037
RDNLRTMDA	9	Unmodified	_RDNLRTMDA_					0	0	0		ENST00000484847.5_1_7:50343903-50367553:+|nuORF	ENST00000484847.5_1_7:50343903-50367553:+|nuORF	ENST00000484847.5_1_7:50343903-50367553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2659301757812	2	546.266747	1090.51894	-1.4789	-0.00080788	-1.5787	-0.00086238	-3.0576	-0.0016703	546.2659117927758	26.068	1.7547	25.905	25.716	27.471	-0.16331					121	45	4	0	0	0	0.67687	1	1307	1307		47.657	10.498	1	25122000			65766	15315	46364	46430	70987	70987					-0.022697610706927662
RDNVTEVSPVK	11	Unmodified	_RDNVTEVSPVK_					0	0	0		ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	ATAD5|p.A255Vfs*6|1|0.07|ENSG00000176208|chr17:30834844-30834845|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3363647460938	2	622.335684	1242.65681	0.63113	0.00039278	0.72094	0.00044866	1.3521	0.00084144	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.0392	1	13523	13523		28.081	0	1	1535400			65767	142	46365	46431	70988	70988					0.045192657295501704
RDPEAAAKL	9	Unmodified	_RDPEAAAKL_					0	0	0			REV__ENST00000518481.1_1_8:1711349-1711460:-|nuORF	REV__ENST00000518481.1_1_8:1711349-1711460:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7886962890625	2	485.769448	969.524344	-0.74427	-0.00036154	0.71011	0.00034495	-0.034158	-1.6593E-05	485.76970121702897	46.918	1.1736	46.977	46.316	47.489	0.059097					50	32	2	0	0	0	0.023239	1	4619	4619		74.255	15.473	1	2109700	+		65768	34236	46366	46432	70989	70989					0.03836285783404492
RDPGLLIGGY	10	Unmodified	_RDPGLLIGGY_					0	0	0			REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	REV__nc|ENSG00000154059|Q9P2X3-2|IMPACT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2767944335938	2	530.792924	1059.57129	-0.18587	-9.8657E-05	2.6654	0.0014148	2.4796	0.0013161	530.7926117077545	58.952	0.16258	58.771	58.669	58.831	-0.18134					5	3	2	0	0	0	0.03519	1	6490	6490		72.879	8.672	1	42532	+		65769	24929	46367	46433	70990	70990					0.043891453345850096
RDPKKLSR	8	Unmodified	_RDPKKLSR_					0	0	0			REV__nc|ENSG00000106683|P53667-4|LIMK1	REV__nc|ENSG00000106683|P53667-4|LIMK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.29046630859375	2	500.306532	998.598512	0.16732	8.3712E-05	2.3634	0.0011824	2.5308	0.0012662	500.3073595571553	86.288	0.48168	86.101	85.859	86.341	-0.18696					14	10	2	0	0	0	0.027866	1	10441	10441		32.812	10.853	1	33715	+		65770	21635	46368	46434	70991	70991					0.09915673665614122
RDPKKRSL	8	Unmodified	_RDPKKRSL_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2903137207031	2	500.306532	998.598512	-0.089923	-4.4989E-05	3.8089	0.0019056	3.719	0.0018606	500.3075731040895	86.233	0.43655	86.096	85.832	86.268	-0.13734					19	9	3	0	0	0	0.027866	1	10446	10446		44.117	9.9443	1	35595			65771	8195	46369	46435	70992	70992					0.09915673665602753
RDPRGEYEE	9	Unmodified	_RDPRGEYEE_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.76171875	2	575.759809	1149.50507	0.46667	0.00026869	2.5935	0.0014932	3.0601	0.0017619	575.7611625023721	17.052	0.51112	16.91	16.765	17.276	-0.14278					31	13	3	0	0	0	0.87448	1	125	125		34.173	2.6427	1	380980			65772	10183	46370	46436	70993	70993					-0.0637071529813511
RDPSCDLNP	9	Unmodified	_RDPSCDLNP_					0	0	0			REV__ENST00000366628.9_1_1:233086394-233086478:+|nuORF	REV__ENST00000366628.9_1_1:233086394-233086478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.78216552734375	2	508.726923	1015.43929	-0.33746	-0.00017168	-3.2083	-0.0016322	-3.5458	-0.0018038	508.72508970875634	41.731	0.70262	41.501	41.196	41.899	-0.2303					36	18	3	0	0	0	0.024397	1	3737	3737		39.253	0	1	659420	+		65773	30981	46371	46437	70994	70994					-0.06780827744705675
RDQRRHIKRW	10	Unmodified	_RDQRRHIKRW_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2534484863281	3	484.27987	1449.81778	-0.32027	-0.0001551	-2.1029	-0.0010184	-2.4232	-0.0011735	484.27812089176217	52.638	0.35814	52.638	52.431	52.789	0					19	8	3	0	0	0	0.03519	1	5624	5624		10.587	1.7875	1	484300		+	65774	544	46372	46438	70995	70995					0.11086497676819818
RDREREKERE	10	Unmodified	_RDREREKERE_					0	0	0		ENSG00000123200|ENST00000679008|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;nc|ENSG00000123200|Q5T200-2|ZC3H13	ENSG00000123200|ENST00000679008|ZC3H13	ENSG00000123200|ENST00000679008|ZC3H13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.3053283691406	3	468.243039	1401.70729	-0.26601	-0.00012456	-2.3295	-0.0010908	-2.5955	-0.0012153	468.241995541394	52.899	0.59785	52.899	52.634	53.232	0					27	15	2	0	0	0	0.03519	1	5727	5727		20.837	0	1	103300			65775	3962	46373	46439	70996	70996					0.02250188107291251
RDRERRRRQR	10	Unmodified	_RDRERRRRQR_					0	0	0			REV__ENST00000452135.6_3_5:179707603-179719088:-|nuORF	REV__ENST00000452135.6_3_5:179707603-179719088:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2914733886719	3	495.289428	1482.84646	0.34089	0.00016884	3.8513	0.0019075	4.1922	0.0020763	495.29135186779763	18.633	0.93958	18.43	18.113	19.053	-0.20371					41	18	3	0	0	0	1.0997	1	318	318		32.751	6.0008	1	205770	+		65776	32732	46374	46440	70997	70997					0.12434615305937768
RDRERRRRQR	10	Unmodified	_RDRERRRRQR_					0	0	0			REV__ENST00000452135.6_3_5:179707603-179719088:-|nuORF	REV__ENST00000452135.6_3_5:179707603-179719088:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.6263427734375	3	495.289428	1482.84646	2.6443	0.0013097	1.6416	0.00081309	4.286	0.0021228	495.2901667118732	18.67	0.944	18.428	18.074	19.018	-0.24256					50	18	4	0	0	0	1.0997	1	300	300		32.751	6.6872	1	162770	+		65777	32732	46374	46440	70998	70998					0.12434615305937768
RDRESPPD	8	Unmodified	_RDRESPPD_					0	0	0		ENST00000376888.6_1_6:29625018-29635699:+|nuORF;ENST00000483013.5_1_6:29625018-29638487:+|nuORF	ENST00000376888.6_1_6:29625018-29635699:+|nuORF	ENST00000376888.6_1_6:29625018-29635699:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78009033203125	2	486.230687	970.446822	-0.54941	-0.00026714	1.0079	0.00049007	0.4585	0.00022293	486.2309765213608	26.328	0.49565	26.305	25.909	26.405	-0.023088					18	11	2	0	0	0	0.027866	1	1264	1264		30.318	0	1	64800			65778	13192	46375	46441	70999	70999					-0.03958352152767475
RDRGDAYY	8	Unmodified	_RDRGDAYY_					0	0	0		ENST00000484699.1_1_1:155239218-155239476:-|nuORF;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2	ENST00000484699.1_1_1:155239218-155239476:-|nuORF	ENST00000484699.1_1_1:155239218-155239476:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2798767089844	2	508.23323	1014.45191	-1.0327	-0.00052488	1.4158	0.00071954	0.38302	0.00019467	508.7357072910445	48.299	0.11365	48.023	47.966	48.08	-0.27598					4	2	2	0	0	0	0.027866	1	4767	4767		50.025	16.509	1	41001			65779	8641	46376	46442	71000	71000					-0.05474048290147948
RDRNLWYTID	10	Unmodified	_RDRNLWYTID_					0	0	0			REV__ENSG00000119147|ENST00000238044|ECRG4	REV__ENSG00000119147|ENST00000238044|ECRG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2686767578125	3	451.229959	1350.66805	-0.92841	-0.00041893	0.033267	1.5011E-05	-0.89515	-0.00040392	451.2306615978967	37.955	0.17509	37.872	37.743	37.918	-0.082512					6	4	2	0	0	0	0.03519	1	3121	3121		53.089	22.021	1	29510	+		65780	22443	46377	46443	71001	71001					0.006740878237224024
RDSLESSPV	9	Unmodified	_RDSLESSPV_					0	0	0		ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2503662109375	2	495.248546	988.482539	0.37103	0.00018375	3.4792	0.0017231	3.8502	0.0019068	495.25019892971693	68.732	1.2561	68.489	68.11	69.366	-0.24277					78	30	4	0	0	0	0.56934	1	7986	7986		54.776	5.2403	1	4921500			65781	5810;87	46378	46444	71002	71002					-0.012163146957618665
RDSNRSTLL	9	Unmodified	_RDSNRSTLL_					0	0	0		ENST00000555527.1_1_14:67579771-67631908:+|nuORF;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	ENST00000555527.1_1_14:67579771-67631908:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3060302734375	2	531.288537	1060.56252	0.14159	7.5227E-05	-4.0334	-0.0021429	-3.8918	-0.0020676	531.2862999761289	47.899	0.69698	47.712	47.389	48.086	-0.18684					47	18	3	0	0	0	0.02435	1	4741	4741		42.396	0	1	1355300			65782	8187	46379	46445	71003	71003					0.03466171698096332
RDSPVPLTL	9	Unmodified	_RDSPVPLTL_					0	0	0		ENST00000358600.7_1_19:14492235-14499295:+|nuORF;ENST00000599423.5_1_19:14879714-14887649:-|nuORF	ENST00000358600.7_1_19:14492235-14499295:+|nuORF	ENST00000358600.7_1_19:14492235-14499295:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.28759765625	2	499.287474	996.560395	-0.8327	-0.00041576	0.28943	0.00014451	-0.54327	-0.00027125	499.287634578933	55.488	1.0259	55.586	55.183	56.209	0.098015					70	27	3	0	0	0	0.16468	1	6065	6065		96.19	2.995	1	22365000			65783	12719	46380	46446	71004	71004					0.061977429602734446
RDSSARAKV	9	Unmodified	_RDSSARAKV_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2773742675781	2	495.277972	988.541391	-0.44383	-0.00021982	-0.040482	-2.005E-05	-0.48431	-0.00023987	495.27785846359336	20.663	0.47331	20.558	20.326	20.799	-0.10477					23	9	3	0	0	0	0.39228	1	560	560		66.429	4.3219	1	461700			65784	1429	46381	46447	71005	71005					0.0466620638923132
RDTHMRQI	8	Unmodified	_RDTHMRQI_					0	0	0		ENSG00000164162|ENST00000507656|ANAPC10	ENSG00000164162|ENST00000507656|ANAPC10	ENSG00000164162|ENST00000507656|ANAPC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2391357421875	2	528.772	1055.52945	0.28901	0.00015282	-2.8778	-0.0015217	-2.5888	-0.0013689	528.7712014830078	67.854	1.0282	67.873	67.508	68.536	0.018913					96	26	5	0	0	0	0.027866	1	7998	7998		68.485	17.149	1	4470300			65785	7227	46382	46448	71006	71006					0.0039026637439292244
RDTMYQDRHEW	11	Unmodified	_RDTMYQDRHEW_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7874145507812	3	512.89313	1535.65756	-0.39089	-0.00020048	4.2482	0.0021789	3.8573	0.0019784	512.8943127492935	45.268	0.2747	45.056	44.91	45.185	-0.21109					11	7	2	0	0	0	0.024834	1	4261	4261		23.378	9.2919	1	137430			65786	10117	46383	46449	71007	71007					-0.08884262893070627
RDVERAPSH	9	Unmodified	_RDVERAPSH_					0	0	0			REV__ENST00000526262.5_1_11:70189825-70228249:+|nuORF	REV__ENST00000526262.5_1_11:70189825-70228249:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2568359375	2	533.773054	1065.53155	-0.35792	-0.00019105	1.2387	0.00066116	0.88074	0.00047012	533.7735409847553	40.434	0.99327	40.434	39.951	40.944	0					57	27	4	0	0	0	0.024427	1	3605	3605		42.396	0	1	535360	+		65787	23223	46384	46450	71008	71008					0.0014101838385158771
RDVILNLYFL	10	Unmodified	_RDVILNLYFL_					0	0	0		ENST00000533739.1_1_11:89951170-89956122:-|nuORF	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3688354492188	2	633.366256	1264.71796	0.56004	0.00035471	4.0044	0.0025362	4.5644	0.0028909	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	1.0719	1	12100	12100		36.447	4.8125	1	8480900			65788	16320	46385	46451	71009	71009					0.0961882249964674
RDVRSAEG	8	Unmodified	_RDVRSAEG_					0	0	0			REV__ENSG00000262179|ENST00000573382|MYMX	REV__ENSG00000262179|ENST00000573382|MYMX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.2273254394531	2	445.227948	888.441343	-0.82305	-0.00036645	0.85778	0.00038191	0.03473	1.5463E-05	445.22819562186953	26.116	1.543	25.953	25.716	27.259	-0.16331					112	40	4	0	0	0	1.0106	1	1279	1279		35.618	0	1	5899800	+		65789	29119	46386	46452	71010	71010					-0.007340309445680759
RDVTRDLLR	9	Unmodified	_RDVTRDLLR_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.8170776367188	2	572.333279	1142.652	-0.42661	-0.00024416	0.1894	0.0001084	-0.23721	-0.00013576	572.3332483794097	19.601	0.46499	19.601	19.366	19.831	0					19	9	3	0	0	0	0.024527	1	415	415		31.53	0	1	126550	+		65790	24238	46387	46453	71011	71011					0.08638426377456199
REAEIYQTV	9	Unmodified	_REAEIYQTV_					0	0	0		nc|ENSG00000123612|Q8NER5-3|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B	nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000135503|P36896-5|ACVR1B	nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.78466796875	2	554.785296	1107.55604	-0.55309	-0.00030685	0.26039	0.00014446	-0.2927	-0.00016239	554.7853805662158	43.243	0.90407	43.243	42.932	43.836	0					54	24	3	0	0	0	0.16539	1	4054	4054		96.034	26.406	1	3462700			65791	4903;3992	46388	46454	71012	71012					0.006562337466903045
REAEIYQTV	9	Unmodified	_REAEIYQTV_					0	0	0		nc|ENSG00000123612|Q8NER5-3|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B	nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000135503|P36896-5|ACVR1B	nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.78564453125	2	554.785296	1107.55604	-0.81383	-0.0004515	0.56931	0.00031585	-0.24452	-0.00013566	554.7855284986641	43.42	0.75959	43.281	42.991	43.751	-0.13929					51	20	3	0	0	0	0.11727	2	4043	4043;4054		106.68	21.522	1	3153200			65792	4903;3992	46388	46454	71013;71014	71013					0.006562337466903045
REAEIYQTV	9	Unmodified	_REAEIYQTV_					0	0	0		nc|ENSG00000123612|Q8NER5-3|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B	nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000135503|P36896-5|ACVR1B	nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.7849731445312	2	554.785296	1107.55604	0.30877	0.0001713	-0.77429	-0.00042956	-0.46552	-0.00025827	554.784784986918	43.331	0.76506	43.362	43.082	43.847	0.030827					49	20	3	0	0	0	0.16539	2	4002	3990;4002		96.034	20.99	1	3486500			65793	4903;3992	46388	46454	71015;71016	71016					0.006562337466903045
RECVSKCPKI	10	Carbamidomethyl (C)	_RECVSKC(Carbamidomethyl (C))PKI_	RECVSKC(1)PKI		REC(-73)VSKC(73)PKI		0	1	0			REV__ENSG00000162998|ENST00000295113|FRZB	REV__ENSG00000162998|ENST00000295113|FRZB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	610.315185546875	2	610.317925	1218.6213	0.046585	2.8432E-05	-4.2943	-0.0026209	-4.2477	-0.0025925	610.315126923622	61.508	0.96679	61.282	61.082	62.049	-0.22663					49	25	3	0	0	0	0.20166	1	7100	7100		120.87	19.268	2	1986100	+		65794	25518	46389	46455	71017	71017	335				0.02073188676558857
REDARLMF	8	Unmodified	_REDARLMF_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.8104858398438	2	519.263476	1036.5124	-0.11037	-5.7312E-05	-2.1068	-0.001094	-2.2172	-0.0011513	519.2626777381223	96.618	0.57019	96.461	96.296	96.867	-0.15646					20	12	2	0	0	0	0.027866	1	11947	11947		40.573	20.576	1	70917			65795	5759	46390	46456	71018	71018					-0.004396542314225371
REDLQAVL	8	Unmodified	_REDLQAVL_					0	0	0			REV__nc|ENSG00000186417|Q6ZMI3-2|GLDN	REV__nc|ENSG00000186417|Q6ZMI3-2|GLDN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2632141113281	2	472.263999	942.513445	-0.20487	-9.6755E-05	-0.51089	-0.00024128	-0.71577	-0.00033803	472.26375634482406	62.706	1.282	62.706	62.384	63.666	0					81	33	3	0	0	0	0.74904	1	7279	7279		63.306	2.3343	1	18474000	+		65796	27853	46391	46457	71019	71019					0.03988883409135724
REECGPRP	8	Unmodified	_REECGPRP_					0	0	0			REV__SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|19|2|sense	REV__SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|19|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2674560546875	2	472.224351	942.434149	0.49901	0.00023564	-0.2976	-0.00014054	0.2014	9.5107E-05	472.2241028296579	19.844	0.71346	19.844	19.463	20.176	0					21	14	2	0	0	0	0.027866	1	453	453		63.306	22.734	1	35517	+		65797	19474	46392	46458	71020	71020					-0.03937086816642932
REECGPRP	8	Unmodified	_REECGPRP_					0	0	0			REV__SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|19|2|sense	REV__SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|19|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2674560546875	2	472.224351	942.434149	0.060226	2.844E-05	1.7696	0.00083567	1.8299	0.00086411	472.22533625956066	20.124	0.91551	20.02	19.7	20.616	-0.10477					23	18	2	0	0	0	0.027866	1	472	472		63.306	11.971	1	29895	+		65798	19474	46392	46458	71021	71021					-0.03937086816642932
REEDVGQPRL	10	Unmodified	_REEDVGQPRL_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000566636.5_1_16:88724305-88725183:-|nuORF;ENST00000568709.5_1_16:88722865-88725108:-|nuORF;ENST00000563785.5_1_16:88722464-88729488:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.210676	1197.6102	0.2424	9.7011E-05	-2.1973	-0.00087939	-1.9549	-0.00078238	400.5453411429938	22.058	0.52414	21.982	21.793	22.317	-0.075294					18	10	2	0	0	0	0.03519	1	739	739		50.034	0	1	27269			65799	7693	46393	46459	71022	71022					0.01929825898287163
REEDVGQPRL	10	Unmodified	_REEDVGQPRL_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000566636.5_1_16:88724305-88725183:-|nuORF;ENST00000568709.5_1_16:88722865-88725108:-|nuORF;ENST00000563785.5_1_16:88722464-88729488:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	400.210676	1197.6102	0.92294	0.00036937	0.40948	0.00016388	1.3324	0.00053325	400.210715694688	21.941	0.62209	21.75	21.42	22.042	-0.19072	-0.11628	0.00086894	NaN	50.034	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39312			65800	7693	46393	46459							0.01929825898287163
REELLSRTF	9	Unmodified	_REELLSRTF_					0	0	0		ENST00000571658.2_2_17:45009367-45009658:+|nuORF;nc|ENSG00000108433|O14653-3|GOSR2;ENSG00000108433|ENST00000640051|GOSR2;nc|ENSG00000108433|O14653-2|GOSR2	ENST00000571658.2_2_17:45009367-45009658:+|nuORF	ENST00000571658.2_2_17:45009367-45009658:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8140869140625	2	575.814387	1149.61422	-0.1695	-9.7601E-05	-0.49644	-0.00028586	-0.66594	-0.00038346	575.8140848033166	47.484	0.80964	47.387	47.008	47.818	-0.096653					72	21	5	0	0	0	0.6504	1	4638	4638		49.442	6.5773	1	6822000			65801	2898	46394	46460	71023	71023					0.04539915392001603
REELLSRTF	9	Unmodified	_REELLSRTF_					0	0	0		ENST00000571658.2_2_17:45009367-45009658:+|nuORF;nc|ENSG00000108433|O14653-3|GOSR2;ENSG00000108433|ENST00000640051|GOSR2;nc|ENSG00000108433|O14653-2|GOSR2	ENST00000571658.2_2_17:45009367-45009658:+|nuORF	ENST00000571658.2_2_17:45009367-45009658:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8134155273438	2	575.814387	1149.61422	-0.54648	-0.00031467	-0.062619	-3.6057E-05	-0.6091	-0.00035073	575.8143293593397	47.823	0.77308	47.547	47.231	48.004	-0.27598					66	20	4	0	0	0	0.35646	1	4691	4691		68.787	13.283	1	8177800			65802	2898	46394	46460	71024	71024					0.04539915392001603
REEPPLKL	8	Unmodified	_REEPPLKL_					0	0	0			REV__ENSG00000130545|ENST00000600229|CRB3	REV__ENSG00000130545|ENST00000600229|CRB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2899475097656	2	491.290017	980.565481	0.82396	0.0004048	-0.82893	-0.00040724	-0.0049667	-2.4401E-06	491.2895083322687	73.743	1.2398	73.743	73.477	74.717	0					53	29	3	0	0	0	0.6248	1	9022	9022		73.975	2.679	1	5601200	+		65803	23124	46395	46461	71025	71025					0.07442046822893644
REERPLRS	8	Unmodified	_REERPLRS_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7911376953125	2	521.791247	1041.56794	-1.3825	-0.00072135	0.39467	0.00020594	-0.98778	-0.00051542	521.7916407613886	21.212	1.6353	21.212	20.656	22.291	0					110	33	9	0	0	0	0.94517	1	620	620		45.952	1.4209	1	3431900	+		65804	25337	46396	46462	71026	71026					0.04881895280550452
REGAGAAAQ	9	Unmodified	_REGAGAAAQ_					0	0	0			REV__ENST00000538780.1_1_12:110152108-110152366:+|nuORF	REV__ENST00000538780.1_1_12:110152108-110152366:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.7095642089844	2	415.709391	829.404229	-0.76263	-0.00031703	0.84191	0.00034999	0.079281	3.2958E-05	415.7097228923088	26.126	2.4926	25.963	25.457	27.95	-0.16331					138	63	4	0	0	0	0.80003	1	1342	1342		39.253	0	1	18466000	+		65805	34719	46397	46463	71027	71027					-0.017297024903427882
REGLHFWLEWP	11	Unmodified	_REGLHFWLEWP_					0	0	0			REV__ENST00000366711.3_1_1:228364011-228364131:+|nuORF	REV__ENST00000366711.3_1_1:228364011-228364131:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.23504638671875	3	490.582333	1468.72517	-0.79293	-0.000389	-3.0205	-0.0014818	-3.8134	-0.0018708	490.5808654833474	40.368	0.45159	40.138	39.891	40.343	-0.23021					19	11	2	0	0	0	0.024865	1	3499	3499		17.167	6.5799	1	517270	+		65806	30984	46398	46464	71028	71028					0.009555551000630658
REGLHFWLEWP	11	Unmodified	_REGLHFWLEWP_					0	0	0			REV__ENST00000366711.3_1_1:228364011-228364131:+|nuORF	REV__ENST00000366711.3_1_1:228364011-228364131:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	490.582333	1468.72517	-0.037643	-1.8467E-05	-3.7266	-0.0018282	-3.7643	-0.0018467	490.5805659989941	40.337	0.4072	40.112	39.852	40.259	-0.225	-0.012827	-0.00061921	NaN	17.167	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553520	+		65807	30984	46398	46464							0.009555551000630658
REGLLRRH	8	Unmodified	_REGLLRRH_					0	0	0			REV__ENST00000251496.6_1_4:17812567-17812729:+|nuORF	REV__ENST00000251496.6_1_4:17812567-17812729:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.8104858398438	2	518.809774	1035.60499	-0.10573	-5.4855E-05	0.97137	0.00050396	0.86564	0.0004491	518.8102584233533	96.78	1.672	96.619	96.044	97.716	-0.16106					89	37	4	0	0	0	0.97794	1	11947	11947		40.778	5.1599	1	1585600	+		65808	29506	46399	46465	71029	71029					0.08861611616976006
REHPRLRP	8	Unmodified	_REHPRLRP_					0	0	0			REV__ENST00000518671.5_1_8:41386777-41387722:+|nuORF	REV__ENST00000518671.5_1_8:41386777-41387722:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8094482421875	2	530.809774	1059.60499	-0.638	-0.00033866	0.2101	0.00011153	-0.4279	-0.00022713	530.8099182997815	17.645	1.0932	17.439	17.216	18.309	-0.20669					51	21	5	0	0	0	0.78609	1	201	201		60.294	4.7898	1	1940000	+		65809	29851	46400	46466	71030	71030					0.07757611617012117
REHRLHRVL	9	Unmodified	_REHRLHRVL_					0	0	0		nc|ENSG00000162931|Q9Y577-2|TRIM17;ENSG00000162931|ENST00000366698|TRIM17	nc|ENSG00000162931|Q9Y577-2|TRIM17	nc|ENSG00000162931|Q9Y577-2|TRIM17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	405.911376953125	3	405.910895	1214.71086	3.3733	0.0013692	-3.0146	-0.0012237	0.35863	0.00014557	405.9096747325787	18.155	0.69765	17.912	17.726	18.424	-0.24256					25	13	3	0	0	0	0.97455	1	246	246		25.574	2.0514	1	55134			65810	7014	46401	46467	71031	71031					0.11208947462478136
REHRLHRVL	9	Unmodified	_REHRLHRVL_					0	0	0		nc|ENSG00000162931|Q9Y577-2|TRIM17;ENSG00000162931|ENST00000366698|TRIM17	nc|ENSG00000162931|Q9Y577-2|TRIM17	nc|ENSG00000162931|Q9Y577-2|TRIM17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	405.910895	1214.71086	1.4039	0.00056985	-0.67083	-0.0002723	0.73306	0.00029756	405.91059331330797	18.089	0.44267	17.932	17.705	18.148	-0.15637	0.012769	0.00070558	NaN	25.574	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73113			65811	7014	46401	46467							0.11208947462478136
REHRLHRVL	9	Unmodified	_REHRLHRVL_					0	0	0		nc|ENSG00000162931|Q9Y577-2|TRIM17;ENSG00000162931|ENST00000366698|TRIM17	nc|ENSG00000162931|Q9Y577-2|TRIM17	nc|ENSG00000162931|Q9Y577-2|TRIM17	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	405.910895	1214.71086	0.6685	0.00027135	-0.3001	-0.00012181	0.3684	0.00014954	405.9106929577356	18.121	0.39641	17.914	17.714	18.11	-0.20669	-0.0053533	0.001157	NaN	25.574	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51128			65812	7014	46401	46467							0.11208947462478136
REIIFREF	8	Unmodified	_REIIFREF_					0	0	0		ENST00000523704.5_1_5:163781227-164149795:+|nuORF;ENST00000522303.5_1_5:163724154-164149795:+|nuORF	ENST00000523704.5_1_5:163781227-164149795:+|nuORF	ENST00000523704.5_1_5:163781227-164149795:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.2775268554688	2	555.308741	1108.60293	-0.28577	-0.00015869	-4.2376	-0.0023532	-4.5233	-0.0025118	555.3056629935486	41.858	0.6837	41.627	41.313	41.997	-0.2303					39	18	4	0	0	0	0.027866	1	3706	3706		31.955	15.482	1	602050			65813	16023	46402	46468	71032	71032					0.05297138088508291
REKKFGLI	8	Unmodified	_REKKFGLI_					0	0	0		nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.8057861328125	2	495.808377	989.6022	-1.1155	-0.00055305	-2.8845	-0.0014302	-4	-0.0019832	495.80685471884794	90.039	1.2055	89.876	89.472	90.677	-0.1626					71	28	4	0	0	0	0.96719	1	11002	11002		42.474	3.6683	1	1065400			65814	5948	46403	46469	71033	71033					0.10698343439469227
REKKMQPP	8	Unmodified	_REKKMQPP_					0	0	0		ENST00000426163.5_1_2:208030425-208030898:-|nuORF	ENST00000426163.5_1_2:208030425-208030898:-|nuORF	ENST00000426163.5_1_2:208030425-208030898:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2833251953125	2	507.281669	1012.54878	2.5049	0.0012707	0.69983	0.00035501	3.2048	0.0016257	507.28211952136843	18.275	1.3273	18.275	17.94	19.268	0					60	26	5	0	0	0	1.0574	1	269	269		25.45	1.2474	1	2841700			65815	14080	46404	46470	71034	71034					0.04301222665299065
REKLLLKPSRW	11	Unmodified	_REKLLLKPSRW_					0	0	0			REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.96142578125	3	475.961144	1424.8616	0.51954	0.00024728	-0.6208	-0.00029548	-0.10126	-4.8196E-05	475.9607391172343	63.756	1.3488	63.504	63.156	64.505	-0.25141					111	36	5	0	0	0	1.0471	1	7448	7448		25.892	6.629	1	6049200	+		65816	29707	46405	46471	71035	71035					0.16616669330596778
REKPTNVKKVP	11	Unmodified	_REKPTNVKKVP_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.5977478027344	3	432.597983	1294.77212	0.3206	0.00013869	-0.92363	-0.00039956	-0.60302	-0.00026087	432.5974556080167	105.47	1.1984	105.34	104.83	106.03	-0.12444					83	37	4	0	0	0	1.0483	1	13143	13143		22.562	0	1	2220000			65817	9854	46406	46472	71036	71036					0.13652414651210165
REKRPGRRR	9	Unmodified	_REKRPGRRR_					0	0	0			REV__ENST00000372759.3_1_1:40723786-40723861:+|nuORF	REV__ENST00000372759.3_1_1:40723786-40723861:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8716430664062	2	605.871228	1209.7279	0.020307	1.2303E-05	1.4201	0.0008604	1.4404	0.0008727	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	0.98697	1	12236	12236		23.042	2.0956	1	1147100	+		65818	31214	46407	46473	71037	71037					0.13142868068257485
RELDGEPQF	9	Unmodified	_RELDGEPQF_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.7643432617188	2	545.76182	1089.50909	2.911	0.0015887	1.6807	0.00091724	4.5917	0.002506	545.7626241551637	17.409	0.73946	17.409	17.201	17.94	0					24	14	3	0	0	0	0.6238	1	168	168		51.193	15.574	1	169060	+		65819	29003	46408	46474	71038	71038					-0.03208625804427356
RELDGEPQF	9	Unmodified	_RELDGEPQF_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.763916015625	2	545.76182	1089.50909	-0.18509	-0.00010102	4.4713	0.0024402	4.2862	0.0023392	545.7641048868602	17.571	0.42202	17.428	17.229	17.651	-0.14278					19	8	3	0	0	0	0.89441	1	171	171		32.812	2.3088	1	129560	+		65820	29003	46408	46474	71039	71039					-0.03208625804427356
RELFKKRALS	10	Unmodified	_RELFKKRALS_					0	0	0		ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	ENSG00000197265|ENST00000355904|GTF2E2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.3778686523438	2	624.382771	1246.75099	-0.40996	-0.00025597	-3.0097	-0.0018792	-3.4197	-0.0021352	624.3808030814138	106	0.28818	106	105.83	106.12	0.00014496					19	9	3	0	0	0	1.1246	1	13523	13523		23.523	2.5758	1	145170			65821	9975	46409	46475	71040	71040					0.13748449342369895
RELFKKTP	8	Unmodified	_RELFKKTP_					0	0	0		ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	ENSG00000158435|ENST00000289382|CNOT11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.80419921875	2	509.805834	1017.59712	0.26088	0.000133	-4.4458	-0.0022665	-4.185	-0.0021335	509.8034341260335	98.051	1.1848	98.061	97.728	98.913	0.010231					53	27	3	0	0	0	0.99042	1	12485	12485		38.806	8.3025	1	929870			65822	6669	46410	46476	71041	71041					0.08902039576844345
RELRSAVAE	9	Unmodified	_RELRSAVAE_					0	0	0			REV__ENSG00000185418|ENST00000335968|TARS3	REV__ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.787841796875	2	515.78563	1029.55671	0.0024734	1.2758E-06	1.4816	0.00076417	1.484	0.00076545	515.7875250612326	49.142	1.0482	49.142	48.83	49.878	0					72	28	4	0	0	0	0.51687	2	5065	5065;5077		58.23	5.2932	1	14974000	+		65823	27760	46411	46477	71042;71043	71042					0.04311073186408976
RELSSLHSF	9	Unmodified	_RELSSLHSF_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2804565429688	2	538.28018	1074.54581	-0.38047	-0.0002048	0.28549	0.00015368	-0.094975	-5.1123E-05	538.2801689296648	42.36	0.95587	42.237	41.888	42.844	-0.12299					63	24	4	0	0	0	0.16468	1	3816	3816		96.19	0.37527	1	2352200	+		65824	27155	46412	46478	71044	71044					0.011516708121462216
RELSSLHSF	9	Unmodified	_RELSSLHSF_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.280029296875	2	538.28018	1074.54581	-0.72071	-0.00038795	0.58176	0.00031315	-0.13895	-7.4795E-05	538.2803672470545	42.513	0.9166	42.281	42.042	42.959	-0.23186					57	23	4	0	0	0	0.03201	1	3817	3817		139.97	24.476	1	2590400	+		65825	27155	46412	46478	71045	71045					0.011516708121462216
RELSSLHSF	9	Unmodified	_RELSSLHSF_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.28018	1074.54581	-0.26466	-0.00014246	3.4914	0.0018793	3.2267	0.0017369	538.2818329594745	42.139	1.4356	42.139	41.825	43.261	0	-0.12097	0.0027508	NaN	139.97	62	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370430	+		65826	27155	46412	46478							0.011516708121462216
RELSSLHSF	9	Unmodified	_RELSSLHSF_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.28018	1074.54581	-0.62871	-0.00033842	3.5076	0.0018881	2.8789	0.0015497	538.2820889035573	42.436	1.1752	42.304	41.753	42.928	-0.1322	0.043738	0.0027683	NaN	139.97	56	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323380	+		65827	27155	46412	46478							0.011516708121462216
RELSSLHSF	9	Unmodified	_RELSSLHSF_					0	0	0			REV__ENSG00000177990|ENST00000324472|DPY19L2	REV__ENSG00000177990|ENST00000324472|DPY19L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.28018	1074.54581	-0.71007	-0.00038222	3.4178	0.0018397	2.7077	0.0014575	538.2820562539148	42.22	1.3364	42.246	41.961	43.298	0.026016	-0.013951	0.0026716	NaN	139.97	60	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299680	+		65828	27155	46412	46478							0.011516708121462216
RELVYTIT	8	Unmodified	_RELVYTIT_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7406311035156	2	497.782025	993.549496	-0.42649	-0.0002123	-0.0066039	-3.2873E-06	-0.43309	-0.00021558	497.7817849585685	29.407	0.41568	29.257	29.044	29.459	-0.14952					31	9	4	0	0	0	0.027866	1	1771	1771		40.573	16.053	1	534970			65829	7347	46413	46479	71046	71046					0.05246340585983944
RELVYTIT	8	Unmodified	_RELVYTIT_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.782025	993.549496	-0.93112	-0.00046349	0.34608	0.00017227	-0.58504	-0.00029122	497.78206768171486	29.556	0.42915	29.311	29.011	29.44	-0.24524	0.040852	0.0001782	NaN	45.952	28	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483900			65830	7347	46413	46479							0.05246340585983944
RELVYTIT	8	Unmodified	_RELVYTIT_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	497.782025	993.549496	-0.58833	-0.00029286	0.13152	6.5469E-05	-0.45681	-0.00022739	497.78191697683985	29.414	0.38026	29.242	29.025	29.406	-0.17258	-0.028237	-3.5408E-05	NaN	45.952	23	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425450			65831	7347	46413	46479							0.05246340585983944
REMFWQEMT	9	Oxidation (M)	_REMFWQEM(Oxidation (M))T_		REMFWQEM(1)T		REM(-60)FWQEM(60)T	0	0	1		ENST00000601405.1_1_18:32843450-32844194:-|nuORF	ENST00000601405.1_1_18:32843450-32844194:-|nuORF	ENST00000601405.1_1_18:32843450-32844194:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.18304443359375	3	425.182853	1272.52673	0.20628	8.7706E-05	-4.1	-0.0017432	-3.8937	-0.0016555	425.18178910442623	34.745	1.6206	34.529	34.188	35.809	-0.21555					151	41	7	0	0	0	0.35556	1	2560	2560		68.846	22.874	2	52225000			65832	17512	46414	46480	71047	71047		555			-0.09863369865456662
RENEKIVNEL	10	Unmodified	_RENEKIVNEL_					0	0	0			REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant	REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	622.8389892578125	2	622.335684	1242.65681	-0.54269	-0.00033774	1.9087	0.0011878	1.366	0.0008501	622.3367429399468	110.01	0.87253	110.01	109.85	110.73	0.0059204					89	28	4	0	0	0	1.1197	1	13902	13902		20.947	0.95016	1	2532400	+		65833	24771	46415	46481	71048	71048					0.04519265729595645
RENEKIVNEL	10	Unmodified	_RENEKIVNEL_					0	0	0			REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant	REV__SCLT1|p.A424Qfs*6|1|0.22|ENSG00000151466|chr4:128948520-128948520|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3366088867188	2	622.335684	1242.65681	0.63113	0.00039278	0.72094	0.00044866	1.3521	0.00084144	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.1197	1	13527	13527		20.947	0.10978	1	1535400	+		65834	24771	46415	46481	71049	71049					0.04519265729595645
REPARPLFQL	10	Unmodified	_REPARPLFQL_					0	0	0			REV__ENST00000369651.7_1_6:86159426-86159717:+|nuORF	REV__ENST00000369651.7_1_6:86159426-86159717:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.57000732421875	3	409.571657	1225.69314	0.049554	2.0296E-05	-3.4929	-0.0014306	-3.4433	-0.0014103	409.5702718980634	32.249	0.95272	32.261	31.902	32.855	0.011799					84	24	5	0	0	0	1.0074	1	2223	2223		45.022	3.5956	1	5516500	+		65835	31096	46416	46482	71050	71050					0.08932187416917259
REPMSTPPPPP	11	Unmodified	_REPMSTPPPPP_					0	0	0			REV__ENST00000414318.2_1_3:17349484-18486265:-|nuORF	REV__ENST00000414318.2_1_3:17349484-18486265:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.3002319335938	2	603.302798	1204.59104	-0.43409	-0.00026189	-2.9576	-0.0017843	-3.3917	-0.0020462	603.3008755816461	32.618	0.92422	32.461	32.121	33.046	-0.15772					49	22	4	0	0	0	0.97559	1	2245	2245		32.751	0	1	2210000	+		65836	32034	46417	46483	71051	71051					-0.003068467169896394
REPRRRPLLRW	11	Unmodified	_REPRRRPLLRW_					0	0	0			REV__ENST00000550135.5_1_19:58514063-58517364:+|nuORF	REV__ENST00000550135.5_1_19:58514063-58517364:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7743530273438	3	512.31117	1533.91168	0.021759	1.1147E-05	2.7519	0.0014098	2.7737	0.001421	512.3118002493424	48.229	1.166	48.043	47.712	48.878	-0.18684					47	31	3	0	0	0	0.024898	1	4719	4719		3.2113	0.35952	1	255750	+		65837	34899	46418	46484	71052	71052					0.16608216779104623
REQEPQKKNR	10	Unmodified	_REQEPQKKNR_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.24249267578125	3	438.240858	1311.70075	0.21158	9.2725E-05	2.5609	0.0011223	2.7724	0.001215	438.24187789018686	53.589	0.77763	53.392	53.049	53.827	-0.19739					67	22	4	0	0	0	1.0975	1	5605	5605		33.039	7.9134	1	3949800			65838	6282	46419	46485	71053	71053					0.05736294946564158
REQEPQKKNR	10	Unmodified	_REQEPQKKNR_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	438.240858	1311.70075	-0.82473	-0.00036143	3.8454	0.0016852	3.0207	0.0013238	438.2424423923348	53.571	0.81082	53.435	53.057	53.867	-0.13617	-0.016188	0.0011348	NaN	33.039	68	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4018900			65839	6282	46419	46485							0.05736294946564158
REQEPQKKNR	10	Unmodified	_REQEPQKKNR_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	438.240858	1311.70075	-0.19685	-8.6268E-05	2.883	0.0012635	2.6862	0.0011772	438.2420594358756	53.772	0.71239	53.527	53.237	53.95	-0.2453	0.075741	-0.00013053	NaN	33.039	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4125300			65840	6282	46419	46485							0.05736294946564158
REQQAQQE	8	Unmodified	_REQQAQQE_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3036193847656	2	508.741419	1015.46829	0.094133	4.7889E-05	1.0012	0.00050936	1.0953	0.00055725	508.7418553443082	25.428	1.9606	25.508	24.961	26.922	0.08009					91	46	3	0	0	0	0.027866	1	1277	1277		60.972	2.19	1	731590			65841	898	46420	46486	71054	71054					-0.03882967124047809
REQWIRAKYER	11	Unmodified	_REQWIRAKYER_					0	0	0		nc|ENSG00000105963|O75689-3|ADAP1;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1	nc|ENSG00000105963|O75689-3|ADAP1	nc|ENSG00000105963|O75689-3|ADAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.77923583984375	3	512.279424	1533.81644	-0.28587	-0.00014644	-1.1792	-0.00060407	-1.465	-0.00075051	512.2788635557533	16.802	0.71724	16.594	16.447	17.165	-0.20777					18	14	2	0	0	0	0.024875	1	119	119		10.998	4.9972	1	94278			65842	2739	46421	46487	71055	71055					0.0708881879738783
RERETQSW	8	Unmodified	_RERETQSW_					0	0	0		nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18;chr1:1203960-1204399|494|10.57|0.55|4.27|-|ENST00000328596|TNFRSF18,TNFRSF18	nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.26513671875	2	546.265062	1090.51557	-0.91988	-0.0005025	1.0069	0.00055002	0.086999	4.7524E-05	546.265642390416	26.228	1.6264	25.992	25.803	27.429	-0.23603					107	41	4	0	0	0	0.93274	1	1344	1344		47.916	1.9434	1	26288000			65843	271	46422	46488	71056	71056					-0.026066878530400572
RERLTQVD	8	Unmodified	_RERLTQVD_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7989196777344	2	508.777805	1015.54106	0.57022	0.00029012	-3.5791	-0.001821	-3.0089	-0.0015309	509.2763009203737	72.392	0.4246	72.111	71.92	72.344	-0.28124					17	10	3	0	0	0	0.027866	1	8764	8764		53.351	7.3995	1	165660	+		65844	22273	46423	46489	71057	71057					0.033907866693766664
RERQRQRRLGR	11	Unmodified	_RERQRQRRLGR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.3177795410156	3	504.301445	1509.88251	0.50667	0.00025552	-0.30671	-0.00015467	0.19996	0.00010084	504.3011986213279	52.919	0.47947	52.66	52.443	52.922	-0.25839					23	11	3	0	0	0	0.024885	1	5488	5488		8.0344	0	1	539520			65845	15922	46424	46490	71058	71058					0.1479607248281809
RERQRQRRLGR	11	Unmodified	_RERQRQRRLGR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.3182373046875	3	504.301445	1509.88251	-0.3267	-0.00016475	0.47987	0.000242	0.15318	7.7246E-05	504.30164351055856	52.634	0.44508	52.444	52.267	52.712	-0.18982					22	10	3	0	0	0	0.024892	1	5454	5454		5.4129	0.27055	1	416560			65846	15922	46424	46490	71059	71059					0.1479607248281809
RERQRQRRLGR	11	Unmodified	_RERQRQRRLGR_					0	0	0		ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENST00000517974.1_1_8:117671049-117768052:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	504.301445	1509.88251	-0.033548	-1.6918E-05	0.57855	0.00029176	0.545	0.00027484	504.30170313589457	52.749	0.52135	52.622	52.391	52.913	-0.12705	0.046308	0.00051464	NaN	4.8861	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457560			65847	15922	46424	46490							0.1479607248281809
RERRRPKERRR	11	Unmodified	_RERRRPKERRR_					0	0	0		ENSG00000077157|ENST00000608999|PPP1R12B;nc|ENSG00000077157|O60237-6|PPP1R12B;nc|ENSG00000077157|O60237-4|PPP1R12B;nc|ENSG00000077157|O60237-3|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2862548828125	3	532.324361	1593.95125	-0.64017	-0.00034078	4.2588	0.0022671	3.6187	0.0019263	532.6606319231394	17.103	0.30213	16.895	16.762	17.064	-0.20777					11	5	3	0	0	0	0.024899	1	126	126		5.4129	1.7939	1	35616			65848	1602	46425	46491	71060	71060					0.17803736782525448
RERRRPKERRR	11	Unmodified	_RERRRPKERRR_					0	0	0		ENSG00000077157|ENST00000608999|PPP1R12B;nc|ENSG00000077157|O60237-6|PPP1R12B;nc|ENSG00000077157|O60237-4|PPP1R12B;nc|ENSG00000077157|O60237-3|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	532.324361	1593.95125	4.8524	0.0025831	-0.82656	-0.00044	4.0259	0.0021431	532.3241400255719	17.2	0.19025	16.949	16.835	17.025	-0.25049	0.027288	-0.0059542	NaN	5.4129	10	3	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22089			65849	1602	46425	46491							0.17803736782525448
RERVNAMVRQT	11	Unmodified	_RERVNAMVRQT_					0	0	0			REV__ENSG00000122691|ENST00000242261|TWIST1	REV__ENSG00000122691|ENST00000242261|TWIST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.2247314453125	3	453.913977	1358.7201	-0.78423	-0.00035597	0.13542	6.147E-05	-0.6488	-0.0002945	454.2479541440285	38.467	0.47401	38.288	38.102	38.576	-0.17929					25	12	3	0	0	0	0.024779	1	3192	3192		27.644	0.89421	1	178620	+		65850	22659	46426	46492	71061	71061					0.05508927965820476
RERYKIKTFLI	11	Unmodified	_RERYKIKTFLI_					0	0	0		ENST00000524197.1_1_6:72926891-72975792:+|nuORF	ENST00000524197.1_1_6:72926891-72975792:+|nuORF	ENST00000524197.1_1_6:72926891-72975792:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.26507568359375	3	489.632916	1465.87692	0.081586	3.9947E-05	2.8611	0.0014009	2.9427	0.0014408	489.63499665814845	55.885	0.54923	55.669	55.409	55.958	-0.21607					16	14	2	0	0	0	0.024734	1	6051	6051		43.419	10.379	1	192260			65851	16056	46427	46493	71062	71062					0.1626153612780854
RESSLGKLE	9	Unmodified	_RESSLGKLE_					0	0	0		ENST00000489526.1_1_10:102762295-102762823:+|nuORF	ENST00000489526.1_1_10:102762295-102762823:+|nuORF	ENST00000489526.1_1_10:102762295-102762823:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7816467285156	2	509.780013	1017.54547	-1.0419	-0.00053112	3.6383	0.0018547	2.5964	0.0013236	509.7818435827634	43.975	0.85206	43.83	43.279	44.131	-0.14471					58	23	4	0	0	0	0.16539	1	4127	4127		96.034	2.8904	1	4188600			65852	15413	46428	46494	71063	71063					0.037402510922902366
RETDTHESPSD	11	Unmodified	_RETDTHESPSD_					0	0	0			REV__ENST00000530982.7_1_19:42603618-42636563:-|nuORF	REV__ENST00000530982.7_1_19:42603618-42636563:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	637.268798828125	2	637.268195	1272.52184	-1.2613	-0.00080379	1.596	0.0010171	0.33469	0.00021329	637.2694087819684	34.758	1.229	34.542	34.267	35.496	-0.21555					90	30	5	0	0	0	0.84303	1	2590	2590		30.318	0	1	7197200	+		65853	20034	46429	46495	71064	71064					-0.10352259202863934
RETDTHESPSD	11	Unmodified	_RETDTHESPSD_					0	0	0			REV__ENST00000530982.7_1_19:42603618-42636563:-|nuORF	REV__ENST00000530982.7_1_19:42603618-42636563:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	637.2686157226562	2	637.268195	1272.52184	-0.51072	-0.00032547	0.7833	0.00049917	0.27258	0.0001737	637.2689014444845	34.64	1.1994	34.433	34.12	35.319	-0.20696					82	29	5	0	0	0	0.75915	1	2571	2571		51.193	0	1	7192200	+		65854	20034	46429	46495	71065	71065					-0.10352259202863934
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7484130859375	2	553.80128	1105.58801	-1.0277	-0.00056915	0.38101	0.000211	-0.6467	-0.00035814	553.8014416804399	43.694	0.47157	43.474	43.316	43.788	-0.21939					26	12	3	0	0	0	0.024447	1	3985	3985		25.574	0	1	886330			65855	3084	46430	46496	71066	71066					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.80128	1105.58801	-0.40049	-0.00022179	-0.17394	-9.6326E-05	-0.57443	-0.00031812	553.8011390189903	43.521	0.46848	43.408	43.145	43.614	-0.11253	-0.03875	-0.00053038	NaN	30.318	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483230			65856	3084	46430	46496							0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.80128	1105.58801	-0.80062	-0.00044338	0.39391	0.00021815	-0.40671	-0.00022524	553.8014594264038	43.696	0.54667	43.459	43.211	43.758	-0.23736	0.011575	9.8567E-05	NaN	30.318	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550110			65857	3084	46430	46496							0.03943646220500341
REVTKDVKTNS	11	Unmodified	_REVTKDVKTNS_					0	0	0			REV__nc|ENSG00000211893|P01859-1|IGHG2	REV__nc|ENSG00000211893|P01859-1|IGHG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7751159667969	3	426.233369	1275.67828	0.19606	8.3568E-05	-3.9774	-0.0016953	-3.7813	-0.0016117	426.2316226566188	42.079	0.92216	41.956	41.385	42.307	-0.12299					48	24	4	0	0	0	0.024776	1	3748	3748		36.528	16.213	1	239540	+		65858	37119	46431	46497	71067	71067					0.051466507582972554
REYELERP	8	Unmodified	_REYELERP_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000482114.1_1_4:123147861-123147996:+|nuORF	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.7643432617188	2	546.277638	1090.54072	2.9307	0.001601	-1.5345	-0.00083828	1.3962	0.00076272	546.2773046054007	17.34	0.34687	17.34	17.102	17.449	0					11	6	3	0	0	0	0.027866	1	168	168		31.955	0	1	31084			65859	5269	46432	46498	71068	71068					-0.0009263305048534676
REYNPAILY	9	Unmodified	_REYNPAILY_					0	0	0			REV__ENST00000430710.7_1_14:21853573-21853762:-|nuORF	REV__ENST00000430710.7_1_14:21853573-21853762:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7750854492188	2	569.798206	1137.58186	0.83144	0.00047375	-4.4519	-0.0025367	-3.6205	-0.0020629	569.795953383053	77.906	0.16389	77.663	77.575	77.739	-0.24232					5	3	2	0	0	0	0.023596	1	9280	9280		63.306	6.5852	1	37971	+		65860	32358	46433	46499	71069	71069					0.018571279890011283
REYTKVCF	8	Unmodified	_REYTKVCF_					0	0	0			REV__ENSG00000176531|ENST00000292140|PHLDB3	REV__ENSG00000176531|ENST00000292140|PHLDB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8010864257812	2	523.260402	1044.50625	1.9928	0.0010427	3.4127	0.0017857	5.4054	0.0028284	523.2632572510246	19.832	0.33127	19.898	19.687	20.018	0.066195					12	6	3	0	0	0	0.027866	1	412	412		53.351	28.832	1	36006	+		65861	27027	46434	46500	71070	71070					-0.014221724629351229
REYTKVCF	8	Unmodified	_REYTKVCF_					0	0	0			REV__ENSG00000176531|ENST00000292140|PHLDB3	REV__ENSG00000176531|ENST00000292140|PHLDB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.260402	1044.50625	-0.25774	-0.00013486	3.901	0.0020412	3.6433	0.0019064	523.2619854178678	20.193	0.23276	20.025	19.816	20.049	-0.16774	0.06333	0.00025087	NaN	35.618	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16300	+		65862	27027	46434	46500							-0.014221724629351229
REYYRDYDRWK	11	Unmodified	_REYYRDYDRWK_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.845703125	3	550.598823	1648.77464	0.062305	3.4305E-05	3.8538	0.0021219	3.9161	0.0021562	550.6008357708878	19.724	0.59034	19.563	19.233	19.823	-0.1608					34	11	4	0	0	0	0.024888	1	446	446		6.001	0.85868	1	121440	+		65863	20894	46435	46501	71071	71071					-0.02379781681793247
REYYRDYDRWK	11	Unmodified	_REYYRDYDRWK_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	550.598823	1648.77464	-0.22888	-0.00012602	3.304	0.0018192	3.0751	0.0016932	550.6006090932982	19.815	0.3349	19.815	19.644	19.979	0	0.14238	-0.00025225	NaN	6.001	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15338	+		65864	20894	46435	46501							-0.02379781681793247
RFAGYVTSI	9	Unmodified	_RFAGYVTSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.27471923828125	2	507.274367	1012.53418	-0.10886	-5.5221E-05	-0.19926	-0.00010108	-0.30812	-0.0001563	507.2741325246247	67.08	0.89993	67.104	66.812	67.712	0.023903					62	21	4	0	0	0	0.39228	2	7917	7905;7917		66.429	3.123	1	2621400			65865	3459	46436	46502	71072;71073	71073					0.02841473788816984
RFAGYVTSI	9	Unmodified	_RFAGYVTSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.274367	1012.53418	0.55422	0.00028114	-0.65222	-0.00033085	-0.098003	-4.9714E-05	507.2741760449874	67.541	0.50498	67.286	67.033	67.538	-0.25516	0.13928	-0.00064148	NaN	66.429	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95074			65866	3459	46436	46502							0.02841473788816984
RFAGYVTSI	9	Unmodified	_RFAGYVTSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.274367	1012.53418	-0.31723	-0.00016092	0.64456	0.00032697	0.32734	0.00016605	507.274825297933	67.435	0.50197	67.201	67.053	67.555	-0.23376	0.054695	0.00067416	NaN	66.429	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95355			65867	3459	46436	46502							0.02841473788816984
RFAGYVTSI	9	Unmodified	_RFAGYVTSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.274367	1012.53418	-0.56119	-0.00028468	1.0981	0.00055704	0.53693	0.00027237	507.27494823982084	67.428	0.37962	67.189	66.998	67.378	-0.23814	0.042836	0.0011343	NaN	66.429	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124940			65868	3459	46436	46502							0.02841473788816984
RFDIGVTT	8	Unmodified	_RFDIGVTT_					0	0	0			REV__nc|ENSG00000069974|P51159-2|RAB27A	REV__nc|ENSG00000069974|P51159-2|RAB27A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7445373535156	2	454.745442	907.476331	0.2342	0.0001065	-1.5466	-0.00070332	-1.3124	-0.00059682	454.744657043267	101.69	1.5633	101.56	100.98	102.54	-0.12576					94	37	4	0	0	0	1.043	1	12660	12660		30.504	0	1	2405200	+		65869	20410	46437	46503	71074	71074					0.01889211863363016
RFDRASTTL	9	Unmodified	_RFDRASTTL_					0	0	0			REV__ENSG00000268655|ENST00000637680|unknown	REV__ENSG00000268655|ENST00000637680|unknown	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.343017578125	2	533.78563	1065.55671	-0.79705	-0.00042546	1.2682	0.00067694	0.47113	0.00025148	534.2879159182513	65.928	0.16309	65.677	65.603	65.766	-0.25112					5	3	2	0	0	0	0.024511	1	7543	7543		25.574	4.6271	1	122580	+		65870	29154	46438	46504	71075	71075					0.026550731864290356
RFEGFCVDILR	11	Unmodified	_RFEGFCVDILR_					0	0	0		GRIK5|p.M450I|1|0.34|ENSG00000105737|chr19:42042675-42042675|C/T|missense_variant	GRIK5|p.M450I|1|0.34|ENSG00000105737|chr19:42042675-42042675|C/T|missense_variant	GRIK5|p.M450I|1|0.34|ENSG00000105737|chr19:42042675-42042675|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.23779296875	3	452.236057	1353.68634	-0.4947	-0.00022372	3.1118	0.0014073	2.6171	0.0011836	452.2374794909494	27.14	1.1703	26.972	26.638	27.808	-0.16816					75	27	4	0	0	0	0.78452	1	1465	1465		58.63	10.67	1	1655700			65871	17697	46439	46505	71076	71076					0.023645064740321686
RFEIWFRRRRK	11	Unmodified	_RFEIWFRRRRK_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B;ENST00000504041.1_1_5:169407-179718:+|nuORF	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.255859375	4	413.245747	1648.95388	0.14758	6.0988E-05	-0.042812	-1.7692E-05	0.10477	4.3296E-05	413.4969014106254	20.783	0.29177	20.615	20.444	20.736	-0.16774					8	5	2	0	0	0	0.024898	1	602	602		6.001	4.7691	1	20242			65872	6346	46440	46506	71077	71077					0.15536192187460074
RFGIVTSSAGT	11	Unmodified	_RFGIVTSSAGT_					0	0	0		ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.29541015625	2	548.293288	1094.57202	1.3792	0.00075621	2.0651	0.0011323	3.4443	0.0018885	548.2945708902448	19.755	1.8583	19.821	19.538	21.396	0.066195					101	37	5	0	0	0	1.0075	1	430	430		35.152	1.2304	1	5896600			65873	10416	46441	46507	71078	71078					0.028519399836113735
RFHDRTGDT	9	Unmodified	_RFHDRTGDT_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153751119-153751515:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.7649536132812	2	552.762686	1103.51082	0.10897	6.0237E-05	2.9339	0.0016218	3.0429	0.001682	552.7642702556785	16.908	0.31072	16.76	16.661	16.972	-0.14753					22	10	3	0	0	0	0.85329	1	99	99		35.618	2.1027	1	51436			65874	5665	46442	46508	71079	71079					-0.03679571995803599
RFIIINSE	8	Unmodified	_RFIIINSE_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2632141113281	2	496.282192	990.549831	-0.42545	-0.00021114	-0.70669	-0.00035072	-1.1321	-0.00056186	496.28223580517283	48.804	0.47485	48.622	48.408	48.883	-0.18206					26	12	3	0	0	0	0.027866	1	4835	4835		40.573	10.069	1	272710			65875	1413	46443	46509	71080	71080					0.054177603058633395
RFIKKLEHTWK	11	Unmodified	_RFIKKLEHTWK_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.9590148925781	3	495.961144	1484.8616	0.1597	7.9203E-05	-4.3271	-0.0021461	-4.1674	-0.0020669	495.95869291912163	102.24	1.8619	102.11	101.46	103.32	-0.12931					117	44	4	0	0	0	1.0788	1	12725	12725		17.167	1.2461	1	658600			65876	9515	46444	46510	71081	71081					0.13856669330584737
RFKLCEQII	9	Unmodified	_RFKLCEQII_					0	0	0			REV__ENST00000357992.8_1_1:205579201-205579315:-|nuORF	REV__ENST00000357992.8_1_1:205579201-205579315:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8436279296875	2	575.326076	1148.6376	-0.49744	-0.00028619	1.3534	0.00077864	0.85596	0.00049245	575.3269458276084	89.315	0.46091	89.188	89.039	89.499	-0.12775					15	10	2	0	0	0	0.024381	1	10956	10956		37.159	1.5408	1	90091	+		65877	30843	46445	46511	71082	71082					0.06922637904972362
RFLGIVPES	9	Unmodified	_RFLGIVPES_					0	0	0			REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|24	REV__chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|24	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.2930603027344	2	509.290017	1016.56548	0.063563	3.2372E-05	-2.2356	-0.0011386	-2.172	-0.0011062	509.7889138681513	102.75	0.98817	102.74	102.24	103.23	-0.0046005					45	23	3	0	0	0	0.72875	1	13080	13080		44.117	12.162	1	675910	+		65878	19335	46446	46512	71083	71083					0.05786046822890967
RFLICKKDK	9	Unmodified	_RFLICKKDK_					0	0	0			REV__ENSG00000100077|ENST00000324198|GRK3	REV__ENSG00000100077|ENST00000324198|GRK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8438720703125	2	575.841894	1149.66923	-0.08921	-5.1371E-05	2.5797	0.0014855	2.4905	0.0014341	575.8431556288429	102.51	0.49976	102.52	102.28	102.78	0.0073471					32	11	4	0	0	0	0.99229	1	13116	13116		21.96	0	1	662980	+		65879	21043	46447	46513	71084	71084					0.10038630658914371
RFLKRPAM	8	Unmodified	_RFLKRPAM_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8038330078125	2	509.802571	1017.59059	0.28678	0.0001462	1.9079	0.00097263	2.1946	0.0011188	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.96719	2	10514	10514;10526		42.474	10.945	1	3746700			65880	17324	46448	46514	71085;71086	71085					0.08249823144478796
RFLKRPAM	8	Unmodified	_RFLKRPAM_					0	0	0		ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	ENST00000590210.1_1_19:38755508-38778604:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.8032531738281	2	509.802571	1017.59059	0.28849	0.00014708	1.7978	0.00091653	2.0863	0.0010636	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	1.0133	1	10494	10494		35.201	1.0282	1	3441300			65881	17324	46448	46514	71087	71087					0.08249823144478796
RFLRKTFGPYL	11	Unmodified	_RFLRKTFGPYL_					0	0	0			REV__ENSG00000117148|ENST00000375406|ACTL8	REV__ENSG00000117148|ENST00000375406|ACTL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6087341308594	3	466.60659	1396.79794	0.67563	0.00031525	2.4993	0.0011662	3.175	0.0014815	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0788	1	12480	12480		17.167	1.2461	1	1258700	+		65882	22329	46449	46515	71088	71088					0.11541308893515634
RFLRKTFGPYL	11	Unmodified	_RFLRKTFGPYL_					0	0	0			REV__ENSG00000117148|ENST00000375406|ACTL8	REV__ENSG00000117148|ENST00000375406|ACTL8	MSMS	OPSCC_40_ClassI_Rep-2	5	466.6083068847656	3	466.60659	1396.79794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.52	1	100.39	99.893	100.89	-0.12504								0	0	0	1.3321	1	12480	12480		24.232	0.85391	1		+		65883	22329	46449	46515	71089	71089					0.11541308893515634
RFLYPSLS	8	Unmodified	_RFLYPSLS_					0	0	0			REV__ENSG00000072080|ENST00000168148|SPP2	REV__ENSG00000072080|ENST00000168148|SPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.76947021484375	2	491.77146	981.528367	-0.46802	-0.00023016	-3.6699	-0.0018048	-4.1379	-0.0020349	491.7694520645701	27.983	0.7664	27.979	27.692	28.458	-0.0042019					49	18	4	0	0	0	0.59392	1	1581	1581		76.847	7.219	1	1902200	+		65884	20460	46450	46516	71090	71090					0.03686375277152365
RFLYPSLS	8	Unmodified	_RFLYPSLS_					0	0	0			REV__ENSG00000072080|ENST00000168148|SPP2	REV__ENSG00000072080|ENST00000168148|SPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7691955566406	2	491.77146	981.528367	-0.7429	-0.00036534	-3.5104	-0.0017263	-4.2533	-0.0020916	491.7695662539174	27.746	0.71809	27.828	27.571	28.289	0.081291					41	17	4	0	0	0	0.59392	1	1519	1519		76.847	5.5509	1	2010500	+		65885	20460	46450	46516	71091	71091					0.03686375277152365
RFNLFLRRRLM	11	Unmodified	_RFNLFLRRRLM_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8368835449219	3	507.969757	1520.88744	-0.26595	-0.00013509	0.041136	2.0896E-05	-0.22481	-0.0001142	507.96946979070475	17.805	0.74604	17.598	17.364	18.11	-0.20669					18	14	2	0	0	0	0.024873	1	208	208		6.001	0	1	32118			65886	8184	46451	46517	71092	71092					0.14783240301221667
RFPECHPKDI	10	Carbamidomethyl (C)	_RFPEC(Carbamidomethyl (C))HPKDI_	RFPEC(1)HPKDI		RFPEC(42)HPKDI		0	1	0		ENST00000258534.12_1_12:102313921-102315031:+|nuORF	ENST00000258534.12_1_12:102313921-102315031:+|nuORF	ENST00000258534.12_1_12:102313921-102315031:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	433.54833984375	3	433.548523	1297.62374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.742	1	24.742	24.242	25.242	0								0	0	0	0.749	1	1105	1105		42.338	15.588	1				65887	11425	46452	46518	71093	71093	158				-0.013166395941425435
RFPELAALAD	10	Unmodified	_RFPELAALAD_					0	0	0		ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.7984008789062	2	551.798206	1101.58186	-0.18273	-0.00010083	0.43988	0.00024273	0.25716	0.0001419	551.7983495070562	18.36	0.49307	18.228	18.056	18.549	-0.13147					19	9	3	0	0	0	1.0616	1	278	278		37.812	3.8899	1	245100			65888	8897	46453	46519	71094	71094					0.03513127989003806
RFPGIVQR	8	Unmodified	_RFPGIVQR_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.79034423828125	2	486.790518	971.566484	-0.75013	-0.00036516	0.54289	0.00026427	-0.20724	-0.00010088	486.79058737492784	37.602	1.1274	37.393	36.999	38.126	-0.2092					95	30	5	0	0	0	0.93274	1	3010	3010		47.916	1.9636	1	3324500	+		65889	19428	46454	46520	71095	71095					0.07956305982463618
RFPPTPPLF	9	Unmodified	_RFPPTPPLF_					0	0	0		nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3001098632812	2	536.302927	1070.5913	1.051	0.00056365	-1.0535	-0.00056501	-0.0025338	-1.3589E-06	536.8038658927965	74.326	0.81055	74.326	73.655	74.466	0					51	18	3	0	0	0	0.29158	1	9104	9104		76.774	12.567	1	694760			65890	18214	46455	46521	71096	71096					0.05882941065169689
RFPPTPPLF	9	Unmodified	_RFPPTPPLF_					0	0	0		nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.302927	1070.5913	-0.1629	-8.7362E-05	-0.0054878	-2.9431E-06	-0.16838	-9.0305E-05	536.3029302685312	74.622	0.86898	74.363	73.623	74.492	-0.25887	-0.0065878	0.00022073	NaN	76.774	56	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	815420			65891	18214	46455	46521							0.05882941065169689
RFPPTPPLF	9	Unmodified	_RFPPTPPLF_					0	0	0		nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.302927	1070.5913	-1.1599	-0.00062208	0.71998	0.00038613	-0.43996	-0.00023595	536.3031367913137	74.41	0.92422	74.42	73.64	74.565	0.0096512	0.050136	0.00099887	NaN	76.774	64	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	927060			65892	18214	46455	46521							0.05882941065169689
RFRPEKYA	8	Unmodified	_RFRPEKYA_					0	0	0		MST1|p.T332R|1|0.28|ENSG00000173531|chr3:49686334-49686334|G/C|missense_variant	MST1|p.T332R|1|0.28|ENSG00000173531|chr3:49686334-49686334|G/C|missense_variant	MST1|p.T332R|1|0.28|ENSG00000173531|chr3:49686334-49686334|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7913818359375	2	533.793258	1065.57196	-0.65872	-0.00035162	-1.8817	-0.0010044	-2.5404	-0.001356	533.7921184992395	19.841	1.2075	19.723	19.348	20.555	-0.11872					52	24	4	0	0	0	0.80469	1	460	460		58.782	0	1	416900			65893	17997	46456	46522	71097	71097					0.04179984774282275
RFRPEKYA	8	Unmodified	_RFRPEKYA_					0	0	0		MST1|p.T332R|1|0.28|ENSG00000173531|chr3:49686334-49686334|G/C|missense_variant	MST1|p.T332R|1|0.28|ENSG00000173531|chr3:49686334-49686334|G/C|missense_variant	MST1|p.T332R|1|0.28|ENSG00000173531|chr3:49686334-49686334|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7918701171875	2	533.793258	1065.57196	1.6266	0.00086825	-4.1539	-0.0022173	-2.5273	-0.0013491	533.7908980514418	19.78	1.121	19.846	19.488	20.609	0.066195					55	22	4	0	0	0	0.95679	1	404	404		44.117	3.3386	1	470660			65894	17997	46456	46522	71098	71098					0.04179984774282275
RFRTKSSALF	10	Unmodified	_RFRTKSSALF_					0	0	0			REV__RELN|p.S1378F|1|0.37|ENSG00000189056|chr7:103589608-103589608|G/A|missense_variant	REV__RELN|p.S1378F|1|0.37|ENSG00000189056|chr7:103589608-103589608|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.887451171875	3	404.899773	1211.67749	0.808	0.00032716	-0.77086	-0.00031212	0.037142	1.5039E-05	404.8993595499676	22.652	0.46547	22.463	22.327	22.793	-0.18894					15	9	2	0	0	0	0.03519	1	824	824		37.508	17.478	1	24577	+		65895	37434	46457	46523	71099	71099					0.08011900899896318
RFTLIISN	8	Unmodified	_RFTLIISN_					0	0	0			REV__ENSG00000160785|ENST00000359511|SLC25A44	REV__ENSG00000160785|ENST00000359511|SLC25A44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.7327575683594	2	482.284734	962.554916	-0.39997	-0.0001929	1.3903	0.00067052	0.99033	0.00047762	482.28515660477257	56.78	0.81088	56.877	56.435	57.246	0.097893					27	22	2	0	0	0	0.027866	1	6310	6310		26.693	0	1	242860	+		65896	25345	46458	46524	71100	71100					0.07214064168465484
RFTWLALSD	9	Unmodified	_RFTWLALSD_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8057861328125	2	554.792924	1107.57129	0.39123	0.00021705	2.7182	0.001508	3.1094	0.0017251	554.7943222515021	68.336	0.64195	68.102	67.836	68.478	-0.23454					35	15	4	0	0	0	0.024257	1	7873	7873		77.318	32.94	1	1282300	+		65897	23359	46459	46525	71101	71101					0.021811453345662812
RFTWLALSD	9	Unmodified	_RFTWLALSD_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	554.792924	1107.57129	0.19009	0.00010546	1.6508	0.00091585	1.8409	0.0010213	554.7939012311704	68.043	0.61336	68.043	67.831	68.444	0	-0.067817	-0.00081096	NaN	77.318	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649150	+		65898	23359	46459	46525							0.021811453345662812
RFTWLALSD	9	Unmodified	_RFTWLALSD_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.792924	1107.57129	-0.099043	-5.4948E-05	2.4061	0.0013349	2.3071	0.0012799	554.7942061094604	68.46	0.96365	68.168	67.896	68.86	-0.29267	0.056671	2.7133E-05	NaN	77.318	29	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626830	+		65899	23359	46459	46525							0.021811453345662812
RFTWLALSD	9	Unmodified	_RFTWLALSD_					0	0	0			REV__ENSG00000133138|ENST00000357242|TBC1D8B	REV__ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	554.792924	1107.57129	0.35918	0.00019927	2.1022	0.0011663	2.4614	0.0013656	554.7941235831435	68.185	0.64301	68.204	67.93	68.573	0.018913	0.09327	-0.00031007	NaN	77.318	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613040	+		65900	23359	46459	46525							0.021811453345662812
RFTWRRRLIFF	11	Unmodified	_RFTWRRRLIFF_					0	0	0			REV__ENST00000313401.3_1_17:30817050-30817605:+|nuORF	REV__ENST00000313401.3_1_17:30817050-30817605:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7855224609375	3	533.3124	1596.91537	-0.55251	-0.00029466	1.8728	0.00099879	1.3203	0.00070413	533.3140583364917	45.553	0.31027	45.597	45.512	45.822	0.043877					14	8	3	0	0	0	0.024879	1	4414	4414		8.7993	7.4774	1	815350	+		65901	30231	46460	46526	71102	71102					0.14078886552965741
RFVHHAAWG	9	Unmodified	_RFVHHAAWG_					0	0	0			REV__ENSG00000148154|ENST00000374279|UGCG	REV__ENSG00000148154|ENST00000374279|UGCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.289794921875	2	540.777942	1079.54133	-1.1673	-0.00063127	-3.846	-0.0020798	-5.0134	-0.0027111	540.7754577161114	53.671	0.47247	53.524	53.239	53.711	-0.14723					19	12	2	0	0	0	0.024466	1	5797	5797		42.474	14.22	1	448040	+		65902	24595	46461	46527	71103	71103					0.004742511798895066
RFVQKLGDA	9	Unmodified	_RFVQKLGDA_					0	0	0		ENST00000473995.5_1_1:212955642-212964952:-|nuORF;ENST00000487995.1_1_1:212957698-212965105:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1;ENSG00000117697|ENST00000366977|NSL1	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	ENST00000473995.5_1_1:212955642-212964952:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2926025390625	2	517.293091	1032.57163	0.8722	0.00045118	-1.3582	-0.00070261	-0.48604	-0.00025142	517.2921583229506	54.803	0.54556	54.597	54.395	54.941	-0.20613					35	14	4	0	0	0	0.53979	1	5839	5839		56.721	5.5284	1	2275300			65903	3655	46462	46528	71104	71104					0.05664565054416926
RFVRAATG	8	Unmodified	_RFVRAATG_					0	0	0			REV__ENST00000472070.1_1_2:172641786-172644464:-|nuORF	REV__ENST00000472070.1_1_2:172641786-172644464:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2523193359375	2	439.253769	876.492984	0.44278	0.00019449	-3.2148	-0.0014121	-2.772	-0.0012176	439.25224259140566	90.069	0.98615	90.082	89.55	90.537	0.013443					57	23	4	0	0	0	1.0574	1	11316	11316		18.324	1.6194	1	2014300	+		65904	22235	46463	46529	71105	71105					0.04979757540002083
RFVRRASLA	9	Unmodified	_RFVRRASLA_					0	0	0		nc|ENSG00000130182|Q96SZ4-2|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10;ENSG00000130182|ENST00000576985|ZSCAN10	nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3304443359375	2	538.327799	1074.64105	-1.4276	-0.00076851	2.8461	0.0015321	1.4185	0.00076364	538.3291156494702	44.869	0.81803	44.658	44.399	45.217	-0.21109					55	21	4	0	0	0	0.62163	3	4217	4193;4203;4217		51.335	12.083	1	2471300			65905	4393	46464	46530	71106;71107;71108	71108					0.10671068793840277
RFVRRASLA	9	Unmodified	_RFVRRASLA_					0	0	0		nc|ENSG00000130182|Q96SZ4-2|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10;ENSG00000130182|ENST00000576985|ZSCAN10	nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	538.327799	1074.64105	-1.1713	-0.00063053	2.4871	0.0013389	1.3158	0.00070833	538.3289163794492	44.747	0.86217	44.648	44.392	45.254	-0.099445	-0.0042378	-8.0872E-05	NaN	51.335	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2131200			65906	4393	46464	46530							0.10671068793840277
RFVRRASLA	9	Unmodified	_RFVRRASLA_					0	0	0		nc|ENSG00000130182|Q96SZ4-2|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10;ENSG00000130182|ENST00000576985|ZSCAN10	nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	538.327799	1074.64105	-0.86307	-0.00046461	2.3446	0.0012621	1.4815	0.00079752	538.3287427881261	44.903	0.86298	44.65	44.429	45.292	-0.25252	-0.001692	-0.00023432	NaN	51.335	66	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2168000			65907	4393	46464	46530							0.10671068793840277
RFWLDLTPSD	10	Unmodified	_RFWLDLTPSD_					0	0	0		ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant;nc|ENSG00000005187|Q53FZ2-2|ACSM3;ENSG00000005187|ENST00000289416|ACSM3	ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant	ACSM3|p.I338Tfs*5|1|0.21|ENSG00000005187|chr16:20781780-20781781|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.7500915527344	3	417.211906	1248.61389	-0.16323	-6.81E-05	2.3027	0.00096071	2.1395	0.00089261	417.21211112305576	61.526	0.24998	61.268	61.133	61.383	-0.25725					8	5	2	0	0	0	0.03519	1	6860	6860		15.333	0	1	45139			65908	18	46465	46531	71109	71109					-0.0004750432788114267
RGAAGGDSFHP	11	Unmodified	_RGAAGGDSFHP_					0	0	0			REV__SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|72|3|anti-sense	REV__SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|72|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3313598632812	2	536.251954	1070.48936	-1.1512	-0.00061734	-2.9816	-0.0015989	-4.1328	-0.0022162	536.2504836104621	46.627	0.77736	46.433	45.901	46.678	-0.19387					30	21	2	0	0	0	0.02475	1	4527	4527		42.864	11.334	1	557460	+		65909	37610	46466	46532	71110	71110					-0.043069570245279465
RGAASGPDAQL	11	Unmodified	_RGAASGPDAQL_					0	0	0			REV__ENST00000313754.4_1_3:94226315-94226441:-|nuORF	REV__ENST00000313754.4_1_3:94226315-94226441:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.765625	2	521.767437	1041.52032	-0.21984	-0.00011471	-3.391	-0.0017693	-3.6108	-0.001884	521.7654960251647	99.293	0.87831	99.293	98.867	99.746	0					55	19	4	0	0	0	0.099923	2	12687	12687;12698		109.48	18.702	1	1217500	+		65910	30236	46467	46533	71111;71112	71111					0.0012219628970342455
RGAATDEK	8	Unmodified	_RGAATDEK_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5472717285156	2	424.217049	846.419545	-0.33938	-0.00014397	-0.24759	-0.00010503	-0.58697	-0.000249	424.21608230281623	29.311	0.81142	29.139	28.594	29.406	-0.17258					29	18	3	0	0	0	0.027866	1	1783	1783		20.947	0.95016	1	178220			65911	4847	46468	46534	71113	71113					-0.009808356931443996
RGAAWLWR	8	Unmodified	_RGAAWLWR_					0	0	0			REV__ENST00000505306.5_1_17:48133647-48154208:+|nuORF	REV__ENST00000505306.5_1_17:48133647-48154208:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3023376464844	2	508.28286	1014.55117	-0.57911	-0.00029435	-1.6762	-0.00085196	-2.2553	-0.0011463	508.2813312755084	26.11	0.30376	26.087	25.82	26.124	-0.023088					11	6	3	0	0	0	0.027866	1	1274	1274		57.811	17.033	1	260060	+		65912	34007	46469	46535	71114	71114					0.04447439185264557
RGAGRKPQ	8	Unmodified	_RGAGRKPQ_					0	0	0		ENST00000222792.10_1_7:29234327-29234525:+|nuORF	ENST00000222792.10_1_7:29234327-29234525:+|nuORF	ENST00000222792.10_1_7:29234327-29234525:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2117004394531	2	435.256843	868.499132	-0.027338	-1.1899E-05	-3.3596	-0.0014623	-3.387	-0.0014742	435.2534669265512	43.135	0.65131	42.996	42.595	43.247	-0.13929					35	17	3	0	0	0	0.027866	1	3951	3951		7.6903	0	1	498460			65913	11190	46470	46536	71115	71115					0.05962275771514669
RGAGVRPSFLA	11	Unmodified	_RGAGVRPSFLA_					0	0	0		ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.2664184570312	2	565.825089	1129.63563	0.19515	0.00011042	1.8595	0.0010521	2.0546	0.0011626	565.826037118851	69.59	0.44953	69.339	69.033	69.483	-0.25063					21	10	3	0	0	0	0.024759	1	8099	8099		56.434	23.621	1	168290			65914	15942	46471	46537	71116	71116					0.07599345211360742
RGAGVRPSFLA	11	Unmodified	_RGAGVRPSFLA_					0	0	0		ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.825089	1129.63563	-0.5367	-0.00030368	-0.41423	-0.00023438	-0.95093	-0.00053806	565.8248818927935	69.434	0.62544	69.434	69.166	69.791	0	0.0047132	-0.0011065	NaN	32.751	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362150			65915	15942	46471	46537							0.07599345211360742
RGAGVRPSFLA	11	Unmodified	_RGAGVRPSFLA_					0	0	0		ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.825089	1129.63563	0.36301	0.0002054	-1.2769	-0.00072252	-0.91392	-0.00051712	565.8244711777121	69.817	0.86941	69.524	69.05	69.92	-0.29292	0.094074	-0.0020828	NaN	32.751	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286250			65916	15942	46471	46537							0.07599345211360742
RGAGVRPSFLA	11	Unmodified	_RGAGVRPSFLA_					0	0	0		ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.825089	1129.63563	-1.078	-0.00060997	0.27441	0.00015527	-0.80361	-0.0004547	565.8252719423076	69.557	0.70239	69.572	69.171	69.874	0.015121	0.14272	-0.00032726	NaN	32.751	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277790			65917	15942	46471	46537							0.07599345211360742
RGAKWLKV	8	Unmodified	_RGAKWLKV_					0	0	0			REV__ENSG00000137055|ENST00000397292|PLAA	REV__ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.284423828125	2	479.303262	956.59197	-0.021671	-1.0387E-05	-4.4783	-0.0021464	-4.4999	-0.0021568	479.30186956278993	75.956	0.1895	75.956	75.881	76.071	0					6	4	2	0	0	0	0.027866	1	9365	9365		33.516	5.2613	1	113770	+		65918	23719	46472	46538	71117	71117					0.11193780504891038
RGALDAELKA	10	Unmodified	_RGALDAELKA_					0	0	0		CON__Q8N1N4-2;CON__Q7RTT2;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENSG00000170423|ENST00000304620|KRT78	CON__Q8N1N4-2	CON__Q8N1N4-2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.2957153320312	2	522.29583	1042.57711	-0.96767	-0.00050541	0.14493	7.5699E-05	-0.82273	-0.00042971	522.2958775666599	33.719	0.72201	33.719	33.487	34.209	0					40	18	3	0	0	0	0.62511	1	2469	2469		74.165	3.3488	1	1603200		+	65919	563	46473	46539	71118	71118					0.057522438462456194
RGALDAELKA	10	Unmodified	_RGALDAELKA_					0	0	0		CON__Q8N1N4-2;CON__Q7RTT2;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENSG00000170423|ENST00000304620|KRT78	CON__Q8N1N4-2	CON__Q8N1N4-2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2958984375	2	522.29583	1042.57711	0.11682	6.1016E-05	-0.11253	-5.8773E-05	0.0042953	2.2434E-06	522.2953515954422	33.484	1.2628	33.541	32.916	34.179	0.056568					54	32	3	0	0	0	0.65479	1	2378	2378		70.816	3.3225	1	1318900		+	65920	563	46473	46539	71119	71119					0.057522438462456194
RGALDAELKA	10	Unmodified	_RGALDAELKA_					0	0	0		CON__Q8N1N4-2;CON__Q7RTT2;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENSG00000170423|ENST00000304620|KRT78	CON__Q8N1N4-2	CON__Q8N1N4-2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.29583	1042.57711	-0.66214	-0.00034583	-0.15876	-8.2919E-05	-0.82089	-0.00042875	522.29577312327	33.564	0.78465	33.57	33.255	34.04	0.0066223	-0.039714	-0.00019397	NaN	74.165	44	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1459100		+	65921	563	46473	46539							0.057522438462456194
RGALIISD	8	Unmodified	_RGALIISD_					0	0	0			REV__nc|ENSG00000132470|P16144-3|ITGB4	REV__nc|ENSG00000132470|P16144-3|ITGB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2223205566406	2	422.747985	843.481417	-0.61109	-0.00025834	0.90257	0.00038156	0.29147	0.00012322	422.748339358959	29.618	0.40348	29.621	29.388	29.792	0.0031357					14	9	2	0	0	0	0.027866	1	1809	1809		7.1934	0	1	61801	+		65922	36661	46474	46540	71120	71120					0.053415157259905754
RGAPLARHAR	10	Unmodified	_RGAPLARHAR_					0	0	0			REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7592163085938	2	552.828498	1103.64244	-0.26592	-0.00014701	0.46387	0.00025644	0.19795	0.00010943	552.8283143421856	52.482	0.52186	52.292	52.029	52.551	-0.18982					44	12	5	0	0	0	0.03519	1	5428	5428		14.137	4.4315	1	663040	+		65923	29895	46475	46541	71121	71121					0.09476702882602694
RGAPLQLSAL	10	Unmodified	_RGAPLQLSAL_					0	0	0			REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	REV__ENST00000515773.5_1_6:43164260-43192180:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3074951171875	2	513.308741	1024.60293	-0.34484	-0.00017701	0.7258	0.00037256	0.38097	0.00019555	513.308998837457	53.458	0.53121	53.458	53.124	53.655	0					35	14	3	0	0	0	0.80817	1	5795	5795		60.118	1.8883	1	2291300	+		65924	22018	46476	46542	71122	71122					0.09161138088529697
RGAPVPPR	8	Unmodified	_RGAPVPPR_					0	0	0		ENST00000475622.5_1_5:1463292-1463730:-|nuORF	ENST00000475622.5_1_5:1463292-1463730:-|nuORF	ENST00000475622.5_1_5:1463292-1463730:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.2562561035156	2	425.256311	848.49807	-1.1644	-0.00049519	1.4266	0.00060665	0.26212	0.00011147	425.25682355913864	35.588	1.0631	35.588	35.2	36.263	0					41	28	2	0	0	0	1.043	1	2754	2754		30.504	3.7075	1	2609900			65925	15063	46477	46543	71123	71123					0.06776061402615596
RGAQDVRR	8	Unmodified	_RGAQDVRR_					0	0	0		ENST00000413817.7_2_22:50752691-50752869:-|nuORF	ENST00000413817.7_2_22:50752691-50752869:-|nuORF	ENST00000413817.7_2_22:50752691-50752869:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2845764160156	2	479.270481	956.52641	-0.17634	-8.4516E-05	-2.3535	-0.001128	-2.5298	-0.0012125	479.2695516837533	76.445	0.23772	76.217	76.041	76.279	-0.22843					7	5	2	0	0	0	0.027866	1	9376	9376		24.203	5.8783	1	69960			65926	13850	46478	46544	71124	71124					0.046407593118942714
RGAQSPGLR	9	Unmodified	_RGAQSPGLR_					0	0	0		ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	ENST00000392562.5_1_17:73401186-73401555:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.26739501953125	2	471.267407	940.520262	0.090873	4.2826E-05	-0.14809	-6.979E-05	-0.057217	-2.6964E-05	471.2671812339781	20.014	0.91484	19.909	19.214	20.129	-0.10477					37	18	4	0	0	0	0.70156	1	484	484		45.972	1.8554	1	525090			65927	13421	46479	46545	71125	71125					0.04762241080379681
RGARGLLTP	9	Unmodified	_RGARGLLTP_					0	0	0			REV__ENSG00000169291|ENST00000304760|SHE	REV__ENSG00000169291|ENST00000304760|SHE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.2723083496094	2	470.787976	939.561398	-0.55613	-0.00026182	0.19615	9.2344E-05	-0.35998	-0.00016947	470.78805433462634	91.569	0.81055	91.569	91.174	91.985	0					23	18	2	0	0	0	0.02435	1	11566	11566		14.137	0	1	66769	+		65928	26348	46480	46546	71126	71126					0.08920002119862147
RGARGQNAL	9	Unmodified	_RGARGQNAL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8085021972656	2	471.765032	941.515511	-0.0099565	-4.6971E-06	3.4162	0.0016117	3.4063	0.001607	471.7665602369885	40.659	0.16832	40.682	40.562	40.73	0.023006					8	4	3	0	0	0	0.024436	1	3542	3542		23.042	0	1	219320			65929	5429	46481	46547	71127	71127					0.042413569376208216
RGARLIPSPPN	11	Unmodified	_RGARLIPSPPN_					0	0	0		ENST00000427845.5_1_3:184033190-184033298:+|nuORF	ENST00000427845.5_1_3:184033190-184033298:+|nuORF	ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3438720703125	2	589.343646	1176.67274	-1.4778	-0.00087093	0.7085	0.00041755	-0.76929	-0.00045337	589.3438908095844	95.449	1.0217	95.449	95.093	96.115	0					57	23	3	0	0	0	0.96309	1	12144	12144		45.022	12.21	1	679850			65930	14122	46482	46548	71128	71128					0.09147016757151505
RGARLIPSPPN	11	Unmodified	_RGARLIPSPPN_					0	0	0		ENST00000427845.5_1_3:184033190-184033298:+|nuORF	ENST00000427845.5_1_3:184033190-184033298:+|nuORF	ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3425903320312	2	589.343646	1176.67274	-1.3447	-0.00079247	-0.0816	-4.809E-05	-1.4263	-0.00084056	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0075	1	11855	11855		35.152	4.6484	1	13724000			65931	14122	46482	46548	71129	71129					0.09147016757151505
RGARLIPSPPN	11	Unmodified	_RGARLIPSPPN_					0	0	0		ENST00000427845.5_1_3:184033190-184033298:+|nuORF	ENST00000427845.5_1_3:184033190-184033298:+|nuORF	ENST00000427845.5_1_3:184033190-184033298:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.34375	2	589.343646	1176.67274	-1.3212	-0.00077864	0.069689	4.1071E-05	-1.2515	-0.00073757	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0233	1	11032	11032		31.634	3.752	1	5175100			65932	14122	46482	46548	71130	71130					0.09147016757151505
RGARMALPR	9	Unmodified	_RGARMALPR_					0	0	0			REV__ENST00000446673.5_1_3:42544163-42573332:+|nuORF	REV__ENST00000446673.5_1_3:42544163-42573332:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8217163085938	2	514.300727	1026.5869	-0.65075	-0.00033468	4.4655	0.0022966	3.8148	0.0019619	514.3016247936506	56.77	0.21746	56.605	56.423	56.641	-0.16431					8	5	3	0	0	0	0.02435	1	6308	6308		42.396	14.315	1	111780	+		65933	32633	46483	46549	71131	71131					0.07467153370612323
RGARMALPR	9	Unmodified	_RGARMALPR_					0	0	0			REV__ENST00000446673.5_1_3:42544163-42573332:+|nuORF	REV__ENST00000446673.5_1_3:42544163-42573332:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.3168334960938	2	514.300727	1026.5869	0.41263	0.00021221	-3.8664	-0.0019885	-3.4537	-0.0017763	514.2984022970211	32.618	0.53541	32.425	32.162	32.697	-0.19261					15	12	2	0	0	0	0.024487	1	2260	2260		24.203	0	1	152930	+		65934	32633	46483	46549	71132	71132					0.07467153370612323
RGARPAARSQ	10	Unmodified	_RGARPAARSQ_					0	0	0		ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.280517578125	2	535.302313	1068.59007	0.1963	0.00010508	-0.55506	-0.00029712	-0.35876	-0.00019204	535.3020783865945	83.937	0.51921	83.768	83.533	84.052	-0.16915					16	11	2	0	0	0	0.03519	1	10177	10177		25.574	6.4705	1	87357			65935	13626	46484	46550	71133	71133					0.05852119748988116
RGARPAARSQ	10	Unmodified	_RGARPAARSQ_					0	0	0		ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.302313	1068.59007	-1.3143	-0.00070353	-1.8365	-0.00098306	-3.1507	-0.0016866	535.3014160314488	83.864	0.47721	83.773	83.553	84.03	-0.090454	0.019787	-0.00139	NaN	13.454	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102380			65936	13626	46484	46550							0.05852119748988116
RGARPAARSQ	10	Unmodified	_RGARPAARSQ_					0	0	0		ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.302313	1068.59007	0.35368	0.00018933	-0.44003	-0.00023555	-0.086355	-4.6226E-05	535.3021005810044	83.904	0.72598	83.693	83.476	84.202	-0.21159	-0.060593	0.00010497	NaN	13.454	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115760			65937	13626	46484	46550							0.05852119748988116
RGARPAARSQ	10	Unmodified	_RGARPAARSQ_					0	0	0		ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	ENST00000398645.6_1_11:66886955-66887003:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.302313	1068.59007	-0.16952	-9.0742E-05	0.61258	0.00032792	0.44306	0.00023717	535.3020351422921	83.917	0.47586	83.779	83.588	84.064	-0.13789	0.026039	0.0012319	NaN	13.454	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127670			65938	13626	46484	46550							0.05852119748988116
RGARRRRS	8	Unmodified	_RGARRRRS_					0	0	0			REV__ENST00000303004.4_1_20:48808878-48808932:+|nuORF	REV__ENST00000303004.4_1_20:48808878-48808932:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3265686035156	2	507.810639	1013.60673	0.68372	0.0003472	1.8506	0.00093974	2.5343	0.0012869	507.81150513892294	19.898	0.49193	19.668	19.428	19.92	-0.22961					20	9	3	0	0	0	0.027866	1	466	466		42.474	0	1	151730	+		65939	30086	46485	46551	71134	71134					0.1004666542561381
RGATALPLRT	10	Unmodified	_RGATALPLRT_					0	0	0		ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	ABL2|p.P924Tfs*13|1|0.17|ENSG00000143322|chr1:179108488-179108497|GAGTGGTTGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.318115234375	2	528.31964	1054.62473	-0.8012	-0.00042329	0.52828	0.0002791	-0.27292	-0.00014419	528.3198732868914	39.472	0.84296	39.496	39.135	39.978	0.023727					71	23	5	0	0	0	0.59716	1	3338	3338		77.318	3.0625	1	3283100			65940	12	46486	46552	71135	71135					0.09959942837099334
RGATPVGPP	9	Unmodified	_RGATPVGPP_					0	0	0		ENST00000601673.1_7:6523004-6523760:+|nuORF	ENST00000601673.1_7:6523004-6523760:+|nuORF	ENST00000601673.1_7:6523004-6523760:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.24029541015625	2	426.240327	850.466101	0.0091101	3.8831E-06	0.34579	0.00014739	0.3549	0.00015127	426.2403189747196	31.109	1.6772	31.178	30.414	32.092	0.068962					100	40	4	0	0	0	0.70186	1	2018	2018		45.952	0	1	1102200			65941	17515	46487	46553	71136	71136					0.0348864892880556
RGAVGADHSV	10	Unmodified	_RGAVGADHSV_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2666931152344	2	484.749047	967.483542	0.71602	0.00034709	2.6376	0.0012786	3.3536	0.0016256	484.75003826212077	68.317	0.56291	68.087	67.794	68.357	-0.23048					20	13	2	0	0	0	0.03519	1	7852	7852		29.17	0.020503	1	176460			65942	6348	46488	46554	71137	71137					-0.0015005553618721024
RGAVIGLTQ	9	Unmodified	_RGAVIGLTQ_					0	0	0			REV__ENST00000457484.6_1_7:1609854-1614359:+|nuORF	REV__ENST00000457484.6_1_7:1609854-1614359:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.28240966796875	2	457.774534	913.534515	-0.49882	-0.00022835	1.7242	0.00078931	1.2254	0.00056097	457.77465682855586	34.757	0.52896	34.735	34.593	35.122	-0.021763					27	13	3	0	0	0	0.02435	1	2600	2600		26.693	0	1	398510	+		65943	32809	46489	46555	71138	71138					0.07428893508654255
RGCLLPRRY	9	Unmodified	_RGCLLPRRY_					0	0	0			REV__ENST00000367350.4_1_1:200587964-200589848:-|nuORF	REV__ENST00000367350.4_1_1:200587964-200589848:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.780517578125	2	567.32166	1132.62877	-0.17248	-9.785E-05	1.4884	0.00084442	1.316	0.00074657	567.3224609598535	57.189	0.4328	56.964	56.776	57.209	-0.2248					19	11	2	0	0	0	0.024466	1	6222	6222		12.207	0	1	204350	+		65944	31017	46490	46556	71139	71139					0.06775709059138535
RGCLYRLRA	9	Unmodified	_RGCLYRLRA_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7822265625	2	554.313835	1106.61312	0.51415	0.000285	1.7635	0.00097755	2.2777	0.0012626	554.3137144842377	82.996	0.51709	82.776	82.609	83.126	-0.22015					18	11	2	0	0	0	0.023596	1	9998	9998		63.306	4.5243	1	114210			65945	9742	46491	46557	71140	71140					0.0640742254208817
RGCSAAIY	8	Unmodified	_RGCSAAIY_					0	0	0		ENST00000527171.5_1_11:6947755-6947803:+|nuORF	ENST00000527171.5_1_11:6947755-6947803:+|nuORF	ENST00000527171.5_1_11:6947755-6947803:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.7037048339844	2	420.705263	839.395972	-0.062575	-2.6326E-05	-3.7227	-0.0015661	-3.7852	-0.0015925	420.7035690313256	33.738	0.90265	33.508	33.234	34.137	-0.22926					57	22	4	0	0	0	0.88442	2	2435	2435;2449		52.299	0	1	3549800			65946	16141	46492	46558	71141;71142	71141					-0.030149727313414587
RGCSAAIY	8	Unmodified	_RGCSAAIY_					0	0	0		ENST00000527171.5_1_11:6947755-6947803:+|nuORF	ENST00000527171.5_1_11:6947755-6947803:+|nuORF	ENST00000527171.5_1_11:6947755-6947803:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.7037658691406	2	420.705263	839.395972	-0.28404	-0.0001195	-3.4257	-0.0014412	-3.7098	-0.0015607	420.70369750425516	33.661	0.91807	33.461	33.209	34.127	-0.20019					54	23	4	0	0	0	0.96719	2	2416	2416;2430		42.474	0	1	4228800			65947	16141	46492	46558	71143;71144	71143					-0.030149727313414587
RGCTSLGVFAD	11	Unmodified	_RGCTSLGVFAD_					0	0	0			REV__ENST00000468686.5_1_22:21982709-21983718:-|nuORF	REV__ENST00000468686.5_1_22:21982709-21983718:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2705688476562	2	563.271498	1124.52844	-0.034601	-1.949E-05	2.7435	0.0015453	2.7089	0.0015258	563.2725235544544	64.427	1.2341	64.224	63.706	64.94	-0.20254					60	30	4	0	0	0	0.25451	1	7286	7286		93.598	8.4368	1	1989100	+		65948	25375	46493	46559	71145	71145					-0.028839927851549874
RGDPPDLVL	9	Unmodified	_RGDPPDLVL_					0	0	0		ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2552185058594	2	491.271824	980.529095	0.1605	7.8848E-05	-0.79658	-0.00039133	-0.63608	-0.00031249	491.27116966705256	39.486	1.667	39.486	38.395	40.062	0					119	45	4	0	0	0	0.024427	1	3466	3466		42.396	23.036	1	1229800			65949	14535	46494	46560	71146	71146					0.03805169926170038
RGDRGLQGK	9	Unmodified	_RGDRGLQGK_					0	0	0		nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1;ENSG00000173918|ENST00000579760|C1QTNF1;ENST00000582625.1_1_17:77043224-77044167:+|nuORF	nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1	nc|ENSG00000173918|Q9BXJ1-2|C1QTNF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3084411621094	2	493.778139	985.541725	-0.071685	-3.5396E-05	2.0708	0.0010225	1.9991	0.00098714	493.77907240824527	79.199	0.78235	79.218	79.028	79.811	0.018677					31	18	3	0	0	0	0.024523	1	9739	9739		15.642	0	1	287690			65950	8427	46495	46561	71147	71147					0.048376261090993466
RGDVVKVLS	9	Unmodified	_RGDVVKVLS_					0	0	0		nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;ENSG00000214193|ENST00000453908|SH3D21;nc|ENSG00000214193|A4FU49-5|SH3D21	nc|ENSG00000214193|A4FU49|SH3D21	nc|ENSG00000214193|A4FU49|SH3D21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7945556640625	2	486.795466	971.57638	-0.55881	-0.00027203	-0.39325	-0.00019143	-0.95206	-0.00046346	486.7950619066371	28.356	0.66957	28.352	28.078	28.747	-0.0042019					42	15	4	0	0	0	0.30449	1	1623	1623		75.043	9.5779	1	2424100			65951	10545	46496	46562	71148	71148					0.08945449197187827
RGEEKARGMN	10	Unmodified	_RGEEKARGMN_					0	0	0		ENST00000244766.6_1_6:5998734-5998833:-|nuORF	ENST00000244766.6_1_6:5998734-5998833:-|nuORF	ENST00000244766.6_1_6:5998734-5998833:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.3604125976562	2	574.285471	1146.55639	0.46073	0.00026459	-0.7372	-0.00042336	-0.27647	-0.00015877	574.785600007814	52.675	0.20314	52.528	52.366	52.569	-0.14723					5	4	2	0	0	0	0.03519	1	5621	5621		36.447	0	1	34194			65952	11306	46497	46563	71149	71149					-0.011026698050727646
RGEEPDDPAP	10	Unmodified	_RGEEPDDPAP_					0	0	0			REV__nc|ENSG00000113448|Q08499-11|PDE4D;REV__nc|ENSG00000113448|Q08499-4|PDE4D	REV__nc|ENSG00000113448|Q08499-11|PDE4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7461547851562	2	541.741085	1081.46762	-0.729	-0.00039493	3.069	0.0016626	2.34	0.0012677	542.2445100621006	75.732	0.43103	75.459	75.306	75.737	-0.27266					15	10	2	0	0	0	0.03519	1	8949	8949		58.782	0	1	118900	+		65953	36575;36576	46498	46564	71150	71150					-0.06985806563761798
RGEERSSAGAS	11	Unmodified	_RGEERSSAGAS_					0	0	0			REV__ENST00000520802.5_1_17:45401382-45403631:+|nuORF	REV__ENST00000520802.5_1_17:45401382-45403631:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.32958984375	2	553.762883	1105.51121	0.24074	0.00013331	3.7665	0.0020857	4.0072	0.0022191	553.7648203410344	32.782	0.73581	32.589	32.249	32.985	-0.19262					50	17	4	0	0	0	0.024741	1	2238	2238		45.972	9.5255	1	778300	+		65954	34303	46499	46565	71151	71151					-0.03732197066619847
RGELVPDPEP	10	Unmodified	_RGELVPDPEP_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7669677734375	2	554.785296	1107.55604	0.028746	1.5948E-05	1.4242	0.0007901	1.4529	0.00080605	554.785290391845	52.875	0.66576	52.97	52.529	53.195	0.095669					33	17	3	0	0	0	0.03519	1	5648	5648		30.318	0	1	394900			65955	9413	46500	46566	71152	71152					0.006562337466903045
RGEQPNQAR	9	Unmodified	_RGEQPNQAR_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|25|3|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|25|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.311767578125	2	528.270678	1054.5268	-0.011961	-6.3184E-06	-2.207	-0.0011659	-2.2189	-0.0011722	528.269361721617	36.989	0.37487	36.926	36.789	37.163	-0.063389					20	9	3	0	0	0	0.024344	1	2944	2944		37.812	4.2959	1	121490	+		65956	36014	46501	46567	71153	71153					0.001721342410746729
RGEQPNQAR	9	Unmodified	_RGEQPNQAR_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|25|3|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|2.053010533461297|0.1449238599365492|3.82|488.0|25|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	528.270678	1054.5268	0.0046922	2.4787E-06	-1.9013	-0.0010044	-1.8966	-0.0010019	528.2690221367051	37.177	0.6423	37.21	37.035	37.677	0.032269	0.11281	-7.9571E-06	NaN	37.812	21	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115090	+		65957	36014	46501	46567							0.001721342410746729
RGERGQHGPK	10	Unmodified	_RGERGQHGPK_					0	0	0		ENST00000508434.1_1_5:34033255-34043308:-|nuORF;nc|ENSG00000082196|Q9BXJ4|C1QTNF3;ENSG00000082196|ENST00000382065|C1QTNF3	ENST00000508434.1_1_5:34033255-34043308:-|nuORF	ENST00000508434.1_1_5:34033255-34043308:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.270263671875	2	561.29977	1120.58499	-0.26368	-0.000148	-3.7878	-0.0021261	-4.0515	-0.0022741	561.2966072511233	26.439	0.62855	26.271	26.052	26.68	-0.16816					24	15	3	0	0	0	0.03519	1	1401	1401		33.922	0	1	235380			65958	1726	46502	46568	71154	71154					0.0295181588635387
RGESSASTVSL	11	Unmodified	_RGESSASTVSL_					0	0	0			REV__SLC13A2|p.P198S|1|0.05|ENSG00000007216|chr17:28491454-28491454|C/T|missense_variant	REV__SLC13A2|p.P198S|1|0.05|ENSG00000007216|chr17:28491454-28491454|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.2763061523438	2	547.277835	1092.54112	-1.4898	-0.00081531	-1.1496	-0.00062913	-2.6393	-0.0014444	547.2771932535435	30.72	3.7101	30.72	29.611	33.321	0					193	92	4	0	0	0	0.94988	1	2037	2037		47.96	1.9873	1	3598800	+		65959	37491	46503	46569	71155	71155					-0.0014525812130159466
RGETIKMTI	9	Oxidation (M)	_RGETIKM(Oxidation (M))TI_		RGETIKM(1)TI		RGETIKM(80)TI	0	0	1		ENSG00000134627|ENST00000299001|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-2|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7894287109375	2	532.792066	1063.56958	-0.62603	-0.00033355	-3.2821	-0.0017487	-3.9081	-0.0020822	532.7900326806006	64.355	0.82681	64.099	63.755	64.582	-0.25563					50	20	4	0	0	0	0.26413	1	7302	7302		80.455	7.5754	1	3398800			65960	4814	46504	46570	71156	71156		196			0.040337682542940456
RGEYMFDLL	9	Unmodified	_RGEYMFDLL_					0	0	0			REV__ENSG00000179627|ENST00000342537|ZBTB42	REV__ENSG00000179627|ENST00000342537|ZBTB42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	572.2969360351562	2	572.278792	1142.54303	-0.71189	-0.0004074	-0.24788	-0.00014185	-0.95977	-0.00054926	572.2784824526527	64.428	0.66821	64.428	64.168	64.836	0					26	17	2	0	0	0	0.024436	1	7644	7644		30.504	0	1	141040	+		65961	27284	46505	46571	71157	71157					-0.02253920637031115
RGEYMFDLL	9	Unmodified	_RGEYMFDLL_					0	0	0			REV__ENSG00000179627|ENST00000342537|ZBTB42	REV__ENSG00000179627|ENST00000342537|ZBTB42	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	572.278792	1142.54303	-0.87873	-0.00050288	-0.32963	-0.00018864	-1.2084	-0.00069152	572.2784116032773	64.695	0.67445	64.433	64.047	64.722	-0.2626	-0.021772	0.00060613	NaN	44.117	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133670	+		65962	27284	46505	46571							-0.02253920637031115
RGEYMFDLL	9	Unmodified	_RGEYMFDLL_					0	0	0			REV__ENSG00000179627|ENST00000342537|ZBTB42	REV__ENSG00000179627|ENST00000342537|ZBTB42	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	572.278792	1142.54303	-0.40715	-0.000233	-1.0872	-0.00062216	-1.4943	-0.00085516	572.2781529577103	64.462	0.56229	64.508	64.189	64.751	0.045502	0.053282	-0.0002609	NaN	44.117	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104110	+		65963	27284	46505	46571							-0.02253920637031115
RGEYMFDLL	9	Unmodified	_RGEYMFDLL_					0	0	0			REV__ENSG00000179627|ENST00000342537|ZBTB42	REV__ENSG00000179627|ENST00000342537|ZBTB42	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	572.278792	1142.54303	-0.32555	-0.0001863	-3.2197	-0.0018425	-3.5452	-0.0020288	572.2760844277991	64.652	0.39366	64.449	64.224	64.617	-0.20254	-0.0050942	-0.0027017	NaN	44.117	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139350	+		65964	27284	46505	46571							-0.02253920637031115
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MSMS	OPSCC_39_ClassI_Rep-1	1	462.7559814453125	2	462.756144	923.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.293	1	40.293	39.793	40.793	0								0	0	0	0.1457	1	3533	3533		82.305	24.494	1				65965	18102	46506	46572	71158	71158					0.03292641682753583
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MSMS	OPSCC_39_ClassI_Rep-1	1	462.7564392089844	2	462.756144	923.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.339	1	40.339	39.839	40.839	0								0	0	0	0.11709	1	3541	3541		88.643	20.158	1				65966	18102	46506	46572	71159	71159					0.03292641682753583
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MSMS	OPSCC_39_ClassI_Rep-1	1	462.7560729980469	2	462.756144	923.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.406	1	40.406	39.906	40.906	0								0	0	0	0.25637	1	3553	3553		71.296	13.484	1				65967	18102	46506	46572	71160	71160					0.03292641682753583
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MSMS	OPSCC_39_ClassI_Rep-1	1	462.7562255859375	2	462.756144	923.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.477	1	40.477	39.977	40.977	0								0	0	0	0.37385	1	3566	3566		63.306	5.495	1				65968	18102	46506	46572	71161	71161					0.03292641682753583
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MSMS	OPSCC_39_ClassI_Rep-1	1	462.755859375	2	462.756144	923.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.556	1	40.556	40.056	41.056	0								0	0	0	0.21697	1	3580	3580		73.975	16.163	1				65969	18102	46506	46572	71162	71162					0.03292641682753583
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7561340332031	2	462.756144	923.497735	0.5585	0.00025845	-0.79861	-0.00036956	-0.24012	-0.00011112	462.75574290148563	40.466	1.5802	40.354	39.792	41.372	-0.11222					124	43	5	0	0	0	0.25032	3	3572	3524;3547;3572		82.305	23.523	1	25791000			65970	18102	46506	46572	71163;71164;71165	71165					0.03292641682753583
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;CTTN|p.Q335Lfs*5|1|0.12|ENSG00000085733|chr11:70425374-70425386|TACCAGAAGACAG/-|frameshift_variant;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7563781738281	2	462.756144	923.497735	0.070377	3.2567E-05	-0.34157	-0.00015806	-0.27119	-0.0001255	462.7559356959497	40.591	1.2865	40.614	40.311	41.597	0.023006					103	36	7	0	0	0	0.18915	5	3550	3506;3514;3526;3538;3550		90.777	32.965	1	26979000			65971	18102	46506	46572	71166;71167;71168;71169;71170	71170					0.03292641682753583
RGFSRDPLPP	10	Unmodified	_RGFSRDPLPP_					0	0	0		ENST00000338745.10_3_3:18465897-18466173:-|nuORF	ENST00000338745.10_3_3:18465897-18466173:-|nuORF	ENST00000338745.10_3_3:18465897-18466173:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.3087158203125	2	571.309272	1140.60399	-0.49465	-0.0002826	0.25033	0.00014302	-0.24432	-0.00013958	571.309292551966	40.503	0.8165	40.353	40.078	40.894	-0.1497					51	21	4	0	0	0	0.96965	1	3517	3517		49.442	5.0644	1	3236300			65972	12445	46507	46573	71171	71171					0.03931352457425419
RGFVKTVAL	9	Unmodified	_RGFVKTVAL_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.8053283691406	2	495.808377	989.6022	-1.1155	-0.00055305	-2.8845	-0.0014302	-4	-0.0019832	495.80685471884794	90.039	1.2055	89.876	89.472	90.677	-0.1626					71	28	4	0	0	0	0.92825	1	11014	11014		30.504	0.6621	1	1065400	+		65973	19428	46508	46574	71172	71172					0.10698343439469227
RGFWGVVE	8	Unmodified	_RGFWGVVE_					0	0	0			REV__ENST00000409975.5_2_2:99225058-99225175:+|nuORF	REV__ENST00000409975.5_2_2:99225058-99225175:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.77276611328125	2	475.248152	948.481751	-0.2139	-0.00010166	-4.2247	-0.0020078	-4.4386	-0.0021094	475.24614440917605	23.683	0.50882	23.622	23.347	23.856	-0.060862					19	11	2	0	0	0	0.027866	1	910	910		25.45	0	1	82180	+		65974	31976	46509	46575	71173	71173					0.005449354458505695
RGGAVKVKQ	9	Unmodified	_RGGAVKVKQ_					0	0	0			REV__ENST00000467820.5_1_1:155292812-155294999:+|nuORF	REV__ENST00000467820.5_1_1:155292812-155294999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.8085021972656	2	471.795801	941.577048	-0.049534	-2.337E-05	-0.63739	-0.00030072	-0.68692	-0.00032409	471.7953110240619	40.581	0.23664	40.604	40.494	40.73	0.023003					9	6	2	0	0	0	0.024506	1	3542	3542		23.042	3.6825	1	77234	+		65975	33085	46510	46576	71174	71174					0.10392288636899139
RGGCVNVGQLQ	11	Unmodified	_RGGCVNVGQLQ_					0	0	0			REV__ENSG00000049323|ENST00000404816|LTBP1	REV__ENSG00000049323|ENST00000404816|LTBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.83544921875	2	565.790389	1129.56623	-0.27538	-0.00015581	-1.1492	-0.0006502	-1.4246	-0.000806	565.7901828179703	22.015	0.71745	21.824	21.372	22.089	-0.19072					33	14	5	0	0	0	0.024811	1	723	723		37.812	12.237	1	100260	+		65976	20145	46511	46577	71175	71175					0.006625182003062946
RGGGGRRRR	9	Unmodified	_RGGGGRRRR_					0	0	0			REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8217163085938	2	514.308264	1026.60197	-0.55243	-0.00028412	2.1314	0.0010962	1.579	0.00081208	514.3084376490673	56.37	0.79692	56.209	55.882	56.679	-0.1611					37	21	3	0	0	0	0.024405	1	6308	6308		35.618	3.6634	1	959070	+		65977	32007	46512	46578	71176	71176					0.089737812828389
RGGGGRRRR	9	Unmodified	_RGGGGRRRR_					0	0	0			REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.308264	1026.60197	-0.51207	-0.00026336	4.7769	0.0024568	4.2648	0.0021934	514.3104318172221	56.268	0.50103	56.268	56.07	56.571	0	0.057705	0.00062987	NaN	35.618	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1109600	+		65978	32007	46512	46578							0.089737812828389
RGGGGRRRR	9	Unmodified	_RGGGGRRRR_					0	0	0			REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.308264	1026.60197	-0.45107	-0.00023199	4.3367	0.0022304	3.8856	0.0019984	514.3103719336392	56.342	0.67509	56.186	55.972	56.648	-0.15656	-0.024311	0.00017705	NaN	35.618	25	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376600	+		65979	32007	46512	46578							0.089737812828389
RGGGGRRRR	9	Unmodified	_RGGGGRRRR_					0	0	0			REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.308264	1026.60197	0.20057	0.00010316	4.2058	0.0021631	4.4063	0.0022662	514.3102275619486	56.391	0.62118	56.175	55.998	56.619	-0.21607	-0.034687	4.242E-05	NaN	35.618	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550630	+		65980	32007	46512	46578							0.089737812828389
RGGGGRRRR	9	Unmodified	_RGGGGRRRR_					0	0	0			REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	REV__ENST00000412770.6_2_19:55758407-55770251:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.308264	1026.60197	-0.18062	-9.2896E-05	4.3594	0.0022421	4.1787	0.0021492	514.3102555252412	56.445	0.62642	56.22	55.878	56.504	-0.2248	0.010524	0.00020041	NaN	35.618	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419410	+		65981	32007	46512	46578							0.089737812828389
RGGGLPHYY	9	Unmodified	_RGGGLPHYY_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2553405761719	2	510.256508	1018.49846	-0.51866	-0.00026465	-0.93835	-0.0004788	-1.457	-0.00074345	510.25588435867513	91.722	1.0667	91.599	91.035	92.101	-0.12341					59	24	5	0	0	0	0.80658	1	11267	11267		38.806	0	1	833390	+		65982	20938	46513	46579	71177	71177					-0.010045636682093573
RGGGPVATL	9	Unmodified	_RGGGPVATL_					0	0	0		nc|ENSG00000099889|O00192-2|ARVCF;ENSG00000099889|ENST00000263207|ARVCF;ENST00000487793.5_1_22:19968732-19974706:-|nuORF;ENST00000473551.5_1_22:19968732-19978281:-|nuORF	nc|ENSG00000099889|O00192-2|ARVCF	nc|ENSG00000099889|O00192-2|ARVCF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.240478515625	2	414.240327	826.466101	-0.16364	-6.7786E-05	-0.00092704	-3.8402E-07	-0.16457	-6.817E-05	414.2402786010584	30.171	0.90763	30.18	29.757	30.665	0.0086708					71	21	4	0	0	0	0.4752	2	1910	1898;1910		60.972	8.6728	1	4418800			65983	2093	46514	46580	71178;71179	71179					0.045926489288035555
RGGIKRQR	8	Unmodified	_RGGIKRQR_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.25909423828125	2	485.804491	969.59443	0.2824	0.00013719	3.0132	0.0014638	3.2956	0.001601	485.805162571089	21.331	0.33804	21.154	20.918	21.256	-0.17721					10	6	2	0	0	0	0.027866	1	634	634		19.36	4.6959	1	23146	+		65984	24852	46515	46581	71180	71180					0.10841628962555205
RGGKALPAK	9	Unmodified	_RGGKALPAK_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.2846984863281	2	449.285069	896.555585	0.16637	7.4748E-05	-0.0054328	-2.4409E-06	0.16094	7.2307E-05	449.2849261914421	34.814	0.94889	34.599	34.227	35.176	-0.21556					59	23	4	0	0	0	0.62163	1	2587	2587		51.335	14.176	1	2518100	+		65985	22830	46516	46582	71181	71181					0.10316903608168104
RGGKALPAK	9	Unmodified	_RGGKALPAK_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	449.285069	896.555585	0.16637	7.4748E-05	-0.0054328	-2.4409E-06	0.16094	7.2307E-05	449.2849261914421	34.814	0.94889	34.599	34.227	35.176	-0.21556	-0.11281	-0.00031447	NaN	51.335	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2518100	+		65986	22830	46516	46582							0.10316903608168104
RGGKALPAK	9	Unmodified	_RGGKALPAK_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	449.285069	896.555585	-0.3147	-0.00014139	0.45957	0.00020648	0.14488	6.5091E-05	449.2851429393923	34.763	1.1975	34.557	34.242	35.44	-0.20696	-0.15503	0.00010337	NaN	51.335	64	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2549500	+		65987	22830	46516	46582							0.10316903608168104
RGGKALPAK	9	Unmodified	_RGGKALPAK_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	449.285069	896.555585	-0.47849	-0.00021498	0.53072	0.00023844	0.052228	2.3465E-05	449.2852048956923	34.728	1.0612	34.541	34.199	35.26	-0.18675	-0.17074	0.0001673	NaN	51.335	62	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2807500	+		65988	22830	46516	46582							0.10316903608168104
RGGLVRPV	8	Unmodified	_RGGLVRPV_					0	0	0			REV__ENST00000481883.1_1_21:47977314-47978452:+|nuORF	REV__ENST00000481883.1_1_21:47977314-47978452:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.7133483886719	2	427.271961	852.52937	-0.28222	-0.00012058	0.46344	0.00019802	0.18123	7.7434E-05	427.27213052173613	31.391	0.3692	31.402	31.214	31.583	0.011797					13	8	2	0	0	0	0.027866	1	2086	2086		35.201	8.4046	1	61002	+		65989	33466	46517	46583	71182	71182					0.09720634436700948
RGGNVGINSF	10	Unmodified	_RGGNVGINSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7645263671875	2	510.764697	1019.51484	-0.73319	-0.00037449	-0.083014	-4.2401E-05	-0.8162	-0.00041689	510.76470702365367	25.738	1.2452	25.703	25.313	26.558	-0.034395					75	29	5	0	0	0	0.83673	1	1217	1217		58.23	3.4536	1	7734100			65990	7968	46518	46584	71183	71183					0.00586517497913519
RGGNVGINSF	10	Unmodified	_RGGNVGINSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7647399902344	2	510.764697	1019.51484	-0.0066151	-3.3788E-06	-0.80571	-0.00041153	-0.81232	-0.0004149	510.764350155441	25.563	1.4045	25.644	25.05	26.455	0.080088					70	33	4	0	0	0	0.66532	2	1162	1162;1198		69.628	16.276	1	7656700			65991	7968	46518	46584	71184;71185	71184					0.00586517497913519
RGGNVGINSF	10	Unmodified	_RGGNVGINSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7645263671875	2	510.764697	1019.51484	-0.64567	-0.00032979	0.36662	0.00018725	-0.27906	-0.00014253	510.76476923991424	25.92	0.89616	25.684	25.051	25.948	-0.23603					46	21	4	0	0	0	0.91678	1	1284	1284		52.937	13.684	1	1420900			65992	7968	46518	46584	71186	71186					0.00586517497913519
RGGPPGGGR	9	Unmodified	_RGGPPGGGR_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.718994140625	2	405.720093	809.425633	0.61546	0.00024971	-3.6962	-0.0014996	-3.0807	-0.0012499	405.7184931550817	73.026	0.77895	73.026	72.698	73.477	0					58	19	4	0	0	0	0.62163	1	8895	8895		51.335	4.569	1	3894700			65993	13502	46519	46585	71187	71187					0.013297273290504563
RGGPPGGGR	9	Unmodified	_RGGPPGGGR_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	405.720093	809.425633	0.21925	8.8954E-05	-3.579	-0.0014521	-3.3597	-0.0013631	405.7185714691764	73.386	0.72247	73.109	72.799	73.522	-0.2769	0.038443	0.00013831	NaN	51.335	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011700			65994	13502	46519	46585							0.013297273290504563
RGGPPGGGR	9	Unmodified	_RGGPPGGGR_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	405.720093	809.425633	0.27678	0.00011229	-3.5737	-0.0014499	-3.2969	-0.0013376	405.71852400524847	73.344	0.971	73.079	72.595	73.566	-0.26479	0.0082983	0.0001426	NaN	51.335	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1233700			65995	13502	46519	46585							0.013297273290504563
RGGPPGGGR	9	Unmodified	_RGGPPGGGR_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	405.720093	809.425633	-0.51494	-0.00020892	-2.7968	-0.0011347	-3.3117	-0.0013436	405.7188431490605	73.216	0.84267	73.025	72.718	73.561	-0.19026	-0.045243	0.00077299	NaN	51.335	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044600			65996	13502	46519	46585							0.013297273290504563
RGGPSKSPL	9	Unmodified	_RGGPSKSPL_					0	0	0			REV__ENST00000496906.1_1_9:35750742-35753913:+|nuORF	REV__ENST00000496906.1_1_9:35750742-35753913:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.28509521484375	2	449.758884	897.503215	-0.25676	-0.00011548	4.4718	0.0020112	4.215	0.0018957	449.76069969306764	34.834	0.50292	34.834	34.515	35.018	0					31	12	3	0	0	0	0.023837	1	2630	2630		84.916	19.112	1	567490	+		65997	33839	46520	46586	71188	71188					0.05036320474573586
RGGQPWQLI	9	Unmodified	_RGGQPWQLI_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3118896484375	2	527.793258	1053.57196	-0.4986	-0.00026316	3.4047	0.001797	2.9061	0.0015338	527.7955019471859	36.749	0.91856	36.749	36.162	37.081	0					41	24	2	0	0	0	0.024323	1	2984	2984		44.117	0	1	475560			65998	5001	46521	46587	71189	71189					0.04731984774275588
RGGQPWQLI	9	Unmodified	_RGGQPWQLI_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.311767578125	2	527.793258	1053.57196	-0.29712	-0.00015682	2.9811	0.0015734	2.684	0.0014166	528.2959315697678	36.788	0.8458	36.826	36.234	37.08	0.038044					42	22	2	0	0	0	0.024381	1	2928	2928		29.15	2.4566	1	392780			65999	5001	46521	46587	71190	71190					0.04731984774275588
RGGQYCYPY	9	Unmodified	_RGGQYCYPY_					0	0	0			REV__ENSG00000000005|ENST00000373031|TNMD	REV__ENSG00000000005|ENST00000373031|TNMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.7592163085938	2	553.739834	1105.46511	-0.14478	-8.0173E-05	-3.7186	-0.0020591	-3.8634	-0.0021393	553.7364463419406	52.215	0.42081	52.031	51.852	52.273	-0.18404					15	10	2	0	0	0	0.024466	1	5428	5428		25.45	9.8084	1	95817	+		66000	19751	46522	46588	71191	71191					-0.08339933502406893
RGGRAASEPR	10	Unmodified	_RGGRAASEPR_					0	0	0		ENST00000377659.1_1_9:39288126-39288177:-|nuORF	ENST00000377659.1_1_9:39288126-39288177:-|nuORF	ENST00000377659.1_1_9:39288126-39288177:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.801025390625	2	528.786496	1055.55844	-1.3808	-0.00073016	-0.78246	-0.00041375	-2.1633	-0.0011439	528.7851929933831	38.732	0.74768	38.567	38.15	38.898	-0.16459					28	20	2	0	0	0	0.03519	1	3209	3209		17.468	0	1	185280			66001	13212	46523	46589	71192	71192					0.0328812699503942
RGGRKGLLP	9	Unmodified	_RGGRKGLLP_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.3037414550781	2	477.303793	952.593033	3.4993	0.0016702	-3.7024	-0.0017672	-0.2031	-9.6942E-05	477.3019301345937	18.904	0.73783	18.967	18.698	19.436	0.063307					40	14	4	0	0	0	0.85329	2	311	311;325		35.618	1.0826	1	613180			66002	5036	46524	46590	71193;71194	71193					0.11483994873810843
RGGRKLAEV	9	Unmodified	_RGGRKLAEV_					0	0	0			REV__nc|ENSG00000269858|Q96KS0-2|EGLN2	REV__nc|ENSG00000269858|Q96KS0-2|EGLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7850646972656	2	493.298707	984.582862	-0.51325	-0.00025319	4.281	0.0021118	3.7678	0.0018586	493.30003440906233	56.602	0.70395	56.435	56.082	56.786	-0.1672					46	17	4	0	0	0	0.024381	1	6178	6178		21.96	0	1	915740	+		66003	29161	46525	46591	71195	71195					0.08995387148547707
RGGRPNKK	8	Unmodified	_RGGRPNKK_					0	0	0		TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant;ENSG00000169871|ENST00000306085|TRIM56	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	TRIM56|p.N615Tfs*23|1|0.06|ENSG00000169871|chr7:101089156-101089165|ATATGGAAGG/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	456.7778015136719	2	456.777942	911.541332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.539	1	18.539	18.039	19.039	0								0	0	0	0.81261	1	302	302		33.516	9.3128	1				66004	7982	46526	46592	71196	71196					0.08202251179886844
RGGRSPRAGL	10	Unmodified	_RGGRSPRAGL_					0	0	0		ENST00000372324.5_1_1:44456265-44456820:+|nuORF	ENST00000372324.5_1_1:44456265-44456820:+|nuORF	ENST00000372324.5_1_1:44456265-44456820:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7994384765625	2	513.799406	1025.58426	0.60778	0.00031228	-0.55457	-0.00028494	0.053217	2.7343E-05	513.798850931214	19.348	0.61557	19.348	19.119	19.735	0					46	12	6	0	0	0	0.59716	1	390	390		77.318	5.4401	1	808530			66005	13034	46527	46593	71197	71197					0.0724902123731681
RGGRSVQSV	9	Unmodified	_RGGRSVQSV_					0	0	0		ENST00000488968.1_1_8:21946719-21952121:+|nuORF	ENST00000488968.1_1_8:21946719-21952121:+|nuORF	ENST00000488968.1_1_8:21946719-21952121:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.26611328125	2	473.264865	944.515176	0.20331	9.6219E-05	2.7476	0.0013003	2.9509	0.0013965	473.26605417257434	74.068	1.331	73.881	73.686	75.017	-0.18795					65	33	3	0	0	0	0.14024	1	8734	8734		101.6	2.9713	1	2364000			66006	15398	46528	46594	71198	71198					0.040699372177641635
RGGSASQH	8	Unmodified	_RGGSASQH_					0	0	0			REV__ENST00000501338.5_1_5:96271077-96271491:-|nuORF	REV__ENST00000501338.5_1_5:96271077-96271491:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.1962585449219	2	400.193908	798.373263	0.93276	0.00037329	2.5295	0.0010123	3.4622	0.0013856	400.1951375684852	80.381	1.1826	80.143	79.789	80.971	-0.23784					68	28	3	0	0	0	0.93274	2	9631	9631;9670		47.916	5.4411	1	6749300	+		66007	33912	46529	46595	71199;71200	71199					-0.03398855804573486
RGGSASQH	8	Unmodified	_RGGSASQH_					0	0	0			REV__ENST00000501338.5_1_5:96271077-96271491:-|nuORF	REV__ENST00000501338.5_1_5:96271077-96271491:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.1963195800781	2	400.193908	798.373263	1.3624	0.00054521	3.3155	0.0013268	4.6778	0.001872	400.19566925186354	83.823	1.1063	83.611	83.221	84.327	-0.21159					67	25	4	0	0	0	0.94517	3	10094	10094;10105;10157		45.952	8.9235	1	3795100	+		66008	33912	46529	46595	71201;71202;71203	71201					-0.03398855804573486
RGGSASQH	8	Unmodified	_RGGSASQH_					0	0	0			REV__ENST00000501338.5_1_5:96271077-96271491:-|nuORF	REV__ENST00000501338.5_1_5:96271077-96271491:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.1964111328125	2	400.193908	798.373263	1.6964	0.00067887	1.33	0.00053225	3.0264	0.0012111	400.1946294840402	83.512	1.0624	83.343	83.033	84.096	-0.16916					58	24	3	0	0	0	0.94517	3	10102	10102;10114;10126		45.952	7.1458	1	4784400	+		66009	33912	46529	46595	71204;71205;71206	71204					-0.03398855804573486
RGGSATRRL	9	Unmodified	_RGGSATRRL_					0	0	0			REV__nc|ENSG00000160551|Q7L7X3-3|TAOK1	REV__nc|ENSG00000160551|Q7L7X3-3|TAOK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2873840332031	2	487.286131	972.55771	0.28157	0.0001372	2.4295	0.0011838	2.711	0.0013211	487.28719427006104	37.253	0.50749	37.044	36.765	37.273	-0.2092					25	12	3	0	0	0	0.53979	1	2971	2971		56.721	1.9447	1	1021700	+		66010	25327	46530	46596	71207	71207					0.0703333234598631
RGGSRFLAT	9	Unmodified	_RGGSRFLAT_					0	0	0		nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4;ENST00000470658.1_1_21:44299515-44299605:-|nuORF;ENST00000479429.5_1_21:44283680-44299605:-|nuORF	nc|ENSG00000160193|P57081-2|WDR4	nc|ENSG00000160193|P57081-2|WDR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7784118652344	2	482.769783	963.525013	-0.57412	-0.00027717	-2.7007	-0.0013038	-3.2749	-0.001581	482.7687111931109	49.88	0.41693	49.959	49.698	50.114	0.078953					14	11	2	0	0	0	0.024457	1	5071	5071		21.96	6.3181	1	133060			66011	6788	46531	46597	71208	71208					0.041791252231291764
RGGSRFLAT	9	Unmodified	_RGGSRFLAT_					0	0	0		nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4;ENST00000470658.1_1_21:44299515-44299605:-|nuORF;ENST00000479429.5_1_21:44283680-44299605:-|nuORF	nc|ENSG00000160193|P57081-2|WDR4	nc|ENSG00000160193|P57081-2|WDR4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.769783	963.525013	-0.24722	-0.00011935	-3.8062	-0.0018375	-4.0535	-0.0019569	482.7680198556829	50.021	0.51136	50.021	49.731	50.242	0	0.020157	-0.00045109	NaN	15.642	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117080			66012	6788	46531	46597							0.041791252231291764
RGGTKLLR	8	Unmodified	_RGGTKLLR_					0	0	0			REV__ENST00000536241.1_1_12:6958209-6958627:-|nuORF	REV__ENST00000536241.1_1_12:6958209-6958627:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	450.7902526855469	2	450.790518	899.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.193	1	19.97	19.47	20.47	-0.22344								0	0	0	0.66038	1	490	490		44.117	5.3107	1		+		66013	21933	46532	46598	71209	71209					0.11268305982468974
RGGVAGLW	8	Unmodified	_RGGVAGLW_					0	0	0		ENST00000265393.10_1_7:27779738-27779792:+|nuORF	ENST00000265393.10_1_7:27779738-27779792:+|nuORF	ENST00000265393.10_1_7:27779738-27779792:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.7374267578125	2	408.229762	814.444972	-1.2022	-0.00049079	4.3151	0.0017616	3.1129	0.0012708	408.2310219566789	37.676	0.15118	37.458	37.384	37.535	-0.21848					5	3	2	0	0	0	0.027866	1	3035	3035		21.702	13.471	1	32030			66014	11594	46533	46599	71210	71210					0.03032683619949239
RGGVHLQSQ	9	Unmodified	_RGGVHLQSQ_					0	0	0		SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|48|1|anti-sense	SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|48|1|anti-sense	SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|48|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2718811035156	2	491.264865	980.515176	-0.55589	-0.00027309	1.9276	0.00094696	1.3717	0.00067387	491.26546045620603	33.84	0.56599	33.897	33.732	34.298	0.056568					26	13	2	0	0	0	0.024313	1	2406	2406		21.686	6.8209	1	431320			66015	37985	46534	46600	71211	71211					0.02413937217761486
RGGVPNTL	8	Unmodified	_RGGVPNTL_					0	0	0			REV__ENST00000565547.1_1_15:89630488-89631079:-|nuORF	REV__ENST00000565547.1_1_15:89630488-89631079:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.5475158691406	2	407.232502	812.450451	1.2887	0.0005248	-1.7966	-0.00073162	-0.50787	-0.00020682	407.2318590016935	39.969	0.47296	39.969	39.808	40.281	0					15	12	2	0	0	0	0.027866	1	3508	3508		12.207	0	1	98870	+		66016	35276	46535	46601	71212	71212					0.036723624117598774
RGGVPRPSTL	10	Unmodified	_RGGVPRPSTL_					0	0	0		ENST00000568712.1_1_15:79063704-79103562:-|nuORF	ENST00000568712.1_1_15:79063704-79103562:-|nuORF	ENST00000568712.1_1_15:79063704-79103562:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3052368164062	2	520.30399	1038.59343	-0.61216	-0.00031851	-0.57987	-0.00030171	-1.192	-0.00062022	520.3035967282152	26.299	1.0926	26.276	25.998	27.091	-0.023088					45	26	2	0	0	0	0.94316	1	1331	1331		51.193	5.2204	1	2928700			66017	16992	46536	46602	71213	71213					0.07567369802995927
RGGVVRFGRF	10	Unmodified	_RGGVVRFGRF_					0	0	0			REV__ENST00000502654.5_1_4:76584063-76598547:-|nuORF	REV__ENST00000502654.5_1_4:76584063-76598547:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8140258789062	2	575.833249	1149.65194	-0.19349	-0.00011142	0.72109	0.00041523	0.5276	0.00030381	575.8335878295989	47.566	0.39185	47.47	47.239	47.631	-0.096649					16	10	2	0	0	0	0.03519	1	4676	4676		40.778	13.982	1	113910	+		66018	33937	46537	46603	71214	71214					0.0831047116814716
RGHDLSDN	8	Unmodified	_RGHDLSDN_					0	0	0			REV__ENST00000488077.1_1_20:19870193-19870298:+|nuORF	REV__ENST00000488077.1_1_20:19870193-19870298:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.28240966796875	2	457.209755	912.404957	-0.33132	-0.00015148	-3.6647	-0.0016755	-3.996	-0.001827	457.2080780394466	34.632	0.39254	34.627	34.452	34.845	-0.0045624					11	9	2	0	0	0	0.027866	1	2600	2600		39.253	6.4404	1	30355	+		66019	29538	46538	46604	71215	71215					-0.05474907841289678
RGHIVASVAS	10	Unmodified	_RGHIVASVAS_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MSMS	OPSCC_39_ClassI_Rep-1	1	498.7843933105469	2	498.78289	995.551228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.04	1	47.04	46.54	47.54	0								0	0	0	0.72242	1	4689	4689		58.782	16.307	1		+		66020	28601	46539	46605	71216	71216					0.053273943946123836
RGHLECHEL	9	Unmodified	_RGHLECHEL_					0	0	0			REV__ENSG00000196659|ENST00000408939|TTC30B	REV__ENSG00000196659|ENST00000408939|TTC30B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3275756835938	2	547.264007	1092.51346	-0.82603	-0.00045206	-4.2592	-0.0023309	-5.0852	-0.002783	547.261604901047	41.079	0.17893	41.102	41.04	41.219	0.023003					5	4	2	0	0	0	0.024292	1	3622	3622		40.778	0	1	58094	+		66021	28210	46540	46606	71217	71217					-0.029094398625147733
RGIAKTLCF	9	Unmodified	_RGIAKTLCF_					0	0	0			REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.80029296875	2	504.786587	1007.55862	-0.34577	-0.00017454	-2.4697	-0.0012467	-2.8155	-0.0014212	504.7849322052055	57.902	1.0982	57.993	57.537	58.635	0.091217					55	29	3	0	0	0	0.024427	1	6460	6460		42.396	1.618	1	761870	+		66022	34078	46541	46607	71218	71218					0.05514410670673442
RGICRDFL	8	Unmodified	_RGICRDFL_					0	0	0		ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	ENSG00000100473|ENST00000396618|COCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2618713378906	2	490.260736	978.50692	0.50399	0.00024709	-0.83135	-0.00040758	-0.32736	-0.00016049	490.26122435648193	102.84	3.541	102.67	100.6	104.14	-0.17034					126	87	2	0	0	0	1.0338	1	12769	12769		31.955	1.4512	1	366170			66023	2206	46542	46608	71219	71219					0.016806669767674975
RGIETVLLI	9	Unmodified	_RGIETVLLI_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7716369628906	2	507.321317	1012.62808	-1.3066	-0.00066286	-2.045	-0.0010374	-3.3515	-0.0017003	507.3200894716083	20.63	0.57671	20.63	20.372	20.949	0					27	11	3	0	0	0	0.024535	1	597	597		18.324	0	1	226700			66024	7028	46543	46609	71220	71220					0.12227192891100458
RGIGLFIGID	10	Unmodified	_RGIGLFIGID_					0	0	0		nc|ENSG00000164089|Q8TBG4-3|ETNPPL;nc|ENSG00000164089|Q8TBG4-2|ETNPPL;ENSG00000164089|ENST00000296486|ETNPPL	nc|ENSG00000164089|Q8TBG4-3|ETNPPL	nc|ENSG00000164089|Q8TBG4-3|ETNPPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8096923828125	2	530.811116	1059.60768	-0.638	-0.00033866	-2.3194	-0.0012311	-2.9574	-0.0015698	530.8099182997815	17.645	1.0932	17.439	17.216	18.309	-0.20669					51	21	5	0	0	0	1.1267	1	213	213		29.15	1.2673	1	1940000			66025	7209	46544	46610	71221	71221					0.0802602223127451
RGIISALLVP	10	Unmodified	_RGIISALLVP_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2642822265625	2	519.837134	1037.65972	-0.72841	-0.00037865	0.45693	0.00023753	-0.27148	-0.00014112	519.8372593766196	56.728	0.62151	56.728	56.314	56.936	0					36	17	3	0	0	0	0.03519	1	6283	6283		47.657	19.775	1	418550			66026	1774;107	46545	46611	71222	71222					0.1423918564505584
RGIKHTGG	8	Unmodified	_RGIKHTGG_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.74615478515625	2	413.238119	824.461684	0.7056	0.00029158	-4.29	-0.0017728	-3.5844	-0.0014812	413.23633876972605	84.31	0.16676	84.31	84.215	84.381	0					5	3	2	0	0	0	0.027866	1	10545	10545		55.504	14.932	1	26761	+		66027	25962	46546	46612	71223	71223					0.04243184505912723
RGIKHTGG	8	Unmodified	_RGIKHTGG_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.237060546875	2	413.238119	824.461684	0.064625	2.6705E-05	0.20368	8.4168E-05	0.2683	0.00011087	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	1.0516	1	9144	9144		29.15	1.2673	1	908900	+		66028	25962	46546	46612	71224	71224					0.04243184505912723
RGIKHTGG	8	Unmodified	_RGIKHTGG_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2374572753906	2	413.238119	824.461684	0.092708	3.831E-05	0.22556	9.3211E-05	0.31827	0.00013152	413.23811756919946	76.351	3.9324	76.183	74.993	78.925	-0.16853					174	94	3	0	0	0	1.0338	1	9119	9119		31.955	0	1	809840	+		66029	25962	46546	46612	71225	71225					0.04243184505912723
RGIKVWSL	8	Unmodified	_RGIKVWSL_					0	0	0		ENST00000497878.5_1_19:2988043-2994999:+|nuORF;nc|ENSG00000104953|Q9H808-2|TLE6;ENSG00000104953|ENST00000246112|TLE6	ENST00000497878.5_1_19:2988043-2994999:+|nuORF	ENST00000497878.5_1_19:2988043-2994999:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.28387451171875	2	479.795269	957.575986	-0.51217	-0.00024574	4.3456	0.002085	3.8334	0.0018393	479.7972129111096	75.561	0.46316	75.561	75.343	75.806	0					26	12	3	0	0	0	0.027866	1	9280	9280		31.955	12.595	1	1248400			66030	2623	46547	46613	71226	71226					0.09550074267997388
RGILPVRPL	9	Unmodified	_RGILPVRPL_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1;ENST00000489951.1_1_7:149427187-149427675:+|nuORF	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7894592285156	2	510.837468	1019.66038	0.31295	0.00015987	4.401	0.0022482	4.7139	0.0024081	510.8397133679464	85.61	0.25018	85.472	85.368	85.618	-0.13753					6	5	2	0	0	0	0.024487	1	10386	10386		24.203	5.8783	1	66370			66031	4718	46548	46614	71227	71227					0.15134025084751102
RGILSLYF	8	Unmodified	_RGILSLYF_					0	0	0			REV__ENST00000560730.5_1_15:50757272-50769512:+|nuORF	REV__ENST00000560730.5_1_15:50757272-50769512:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.748046875	2	484.781828	967.549102	-0.16553	-8.0247E-05	0.64044	0.00031047	0.4749	0.00023023	484.7818632933006	70.162	0.45514	69.895	69.704	70.159	-0.26725					18	10	2	0	0	0	0.027866	1	8142	8142		33.516	6.7195	1	216310	+		66032	35154	46549	46615	71228	71228					0.06402965656786819
RGINGTQVL	9	Unmodified	_RGINGTQVL_					0	0	0			REV__ENST00000446807.5_1_10:29698598-29747384:+|nuORF	REV__ENST00000446807.5_1_10:29698598-29747384:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.277587890625	2	479.277441	956.540328	0.21198	0.0001016	0.12251	5.8716E-05	0.33449	0.00016032	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.5973	1	10508	10508		52.937	1.6012	1	4888300	+		66033	32635	46550	46616	71229	71229					0.06031992020314192
RGIPGRPERS	10	Unmodified	_RGIPGRPERS_					0	0	0		ENST00000465522.5_1_2:182322141-182350724:+|nuORF;ENST00000476089.1_1_2:182321937-182323202:+|nuORF	ENST00000465522.5_1_2:182322141-182350724:+|nuORF	ENST00000465522.5_1_2:182322141-182350724:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2960205078125	2	562.817796	1123.62104	-1.141	-0.00064216	-1.6541	-0.00093097	-2.7951	-0.0015731	562.8164674880728	21.633	0.62833	21.42	21.216	21.845	-0.2128					21	12	2	0	0	0	0.03519	1	667	667		37.812	17.815	1	62358			66034	14786	46551	46617	71230	71230					0.06417273063220819
RGIQIFQN	8	Unmodified	_RGIQIFQN_					0	0	0		nc|ENSG00000139926|Q96NE9-2|FRMD6;ENSG00000139926|ENST00000344768|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	nc|ENSG00000139926|Q96NE9-2|FRMD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7972106933594	2	488.272158	974.529764	-0.76747	-0.00037473	-0.88416	-0.00043171	-1.6516	-0.00080644	488.27169509975226	75.787	0.97185	75.787	75.378	76.35	0					31	25	2	0	0	0	0.027866	1	9287	9287		31.955	12.595	1	302230			66035	5378	46552	46618	71231	71231					0.04148009365906091
RGISFSAIIV	10	Unmodified	_RGISFSAIIV_					0	0	0			REV__ENST00000468179.6_1_10:22607528-22607663:+|nuORF	REV__ENST00000468179.6_1_10:22607528-22607663:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8168334960938	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	1.0002	1	10725	10725		45.972	1.5951	1	5249700	+		66036	33097	46553	46619	71232	71232					0.09498308748334239
RGISNIQVTY	10	Unmodified	_RGISNIQVTY_					0	0	0			REV__ENSG00000179477|ENST00000647874|ALOX12B	REV__ENSG00000179477|ENST00000647874|ALOX12B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8142700195312	2	575.814387	1149.61422	-0.14217	-8.1864E-05	-0.54049	-0.00031122	-0.68266	-0.00039308	575.8140611733836	47.606	0.89416	47.419	47.084	47.978	-0.18684					74	23	5	0	0	0	0.94316	1	4655	4655		51.193	6.8155	1	8164400	+		66037	27272	46554	46620	71233	71233					0.04539915392001603
RGKAQQDL	8	Unmodified	_RGKAQQDL_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.7823486328125	2	458.253966	914.493378	0.16012	7.3375E-05	-3.9591	-0.0018143	-3.799	-0.0017409	458.2519792849058	21.174	1.6429	20.983	20.587	22.23	-0.19072					42	33	2	0	0	0	0.027866	1	730	730		24.203	1.1603	1	96124	+		66038	22428	46555	46621	71234	71234					0.03271132469183158
RGKCVVRW	8	Unmodified	_RGKCVVRW_					0	0	0			REV__CTTN|p.G532V|1|0.21|ENSG00000085733|chr11:70435104-70435104|G/T|missense_variant	REV__CTTN|p.G532V|1|0.21|ENSG00000085733|chr11:70435104-70435104|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3029479980469	2	502.284546	1002.55454	-0.28404	-0.00014267	-1.4269	-0.00071672	-1.711	-0.00085938	502.2835076609739	25.664	0.48813	25.494	25.247	25.735	-0.17078					23	11	3	0	0	0	0.027866	1	1217	1217		33.516	1.5607	1	306780	+		66039	19628	46556	46622	71235	71235					0.0533636596761653
RGKEVTSKL	9	Unmodified	_RGKEVTSKL_					0	0	0		nc|ENSG00000100271|O95922-4|TTLL1;ENSG00000100271|ENST00000266254|TTLL1	nc|ENSG00000100271|O95922-4|TTLL1	nc|ENSG00000100271|O95922-4|TTLL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3056945800781	2	509.306198	1016.59784	-1.5235	-0.00077591	1.1913	0.00060676	-0.33212	-0.00016915	509.30666606233405	91.952	1.3811	91.803	91.353	92.734	-0.1487					100	32	4	0	0	0	0.97455	1	11315	11315		25.574	1.0549	1	3302400			66040	2164	46557	46623	71236	71236					0.09020834225896124
RGKGVCEL	8	Unmodified	_RGKGVCEL_					0	0	0			REV__ENSG00000115170|ENST00000434821|ACVR1	REV__ENSG00000115170|ENST00000434821|ACVR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.6986389160156	2	431.234187	860.453822	0.5529	0.00023843	-3.1434	-0.0013556	-2.5905	-0.0011171	431.2328818554867	32.745	0.34821	32.808	32.728	33.076	0.062885					12	8	2	0	0	0	0.027866	1	2252	2252		65.803	12.452	1	54041	+		66041	22173	46558	46624	71237	71237					0.018012891940998088
RGKKAKKH	8	Unmodified	_RGKKAKKH_					0	0	0		nc|ENSG00000140932|Q8TAZ6-2|CMTM2;ENSG00000140932|ENST00000268595|CMTM2	nc|ENSG00000140932|Q8TAZ6-2|CMTM2	nc|ENSG00000140932|Q8TAZ6-2|CMTM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7768859863281	2	476.811785	951.609017	0.66407	0.00031663	4.0799	0.0019453	4.744	0.002262	476.8126273838713	68.428	0.64609	68.428	68.179	68.825	0					41	16	4	0	0	0	0.027866	1	8243	8243		25.45	6.0902	1	799170			66042	5450	46559	46625	71238	71238					0.13127701110693124
RGKKDVWFA	9	Unmodified	_RGKKDVWFA_					0	0	0			REV__nc|ENSG00000107954|O76050-2|NEURL1	REV__nc|ENSG00000107954|O76050-2|NEURL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8114013671875	2	553.808908	1105.60326	-0.69075	-0.00038254	-0.37152	-0.00020575	-1.0623	-0.00058829	553.808464190501	51.241	0.50816	51.092	50.861	51.369	-0.14915					36	13	3	0	0	0	0.024487	1	5438	5438		24.203	0	1	721090	+		66043	21701	46560	46626	71239	71239					0.054685578083763176
RGKKKRAR	8	Unmodified	_RGKKKRAR_					0	0	0		ENST00000375120.3_1_1:20238803-20239091:+|nuORF	ENST00000375120.3_1_1:20238803-20239091:+|nuORF	ENST00000375120.3_1_1:20238803-20239091:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2877502441406	2	500.335959	998.657364	-0.025199	-1.2608E-05	2.3417	0.0011716	2.3165	0.001159	500.337069595427	23.857	0.31219	23.933	23.734	24.046	0.076241					10	6	2	0	0	0	0.027866	1	922	922		23.042	0	1	51879			66044	13149	46561	46627	71240	71240					0.1579819475059594
RGKPNRIL	8	Unmodified	_RGKPNRIL_					0	0	0		ENSG00000148600|ENST00000623527|CDHR1;nc|ENSG00000148600|Q96JP9-2|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	ENSG00000148600|ENST00000623527|CDHR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.8031921386719	2	477.303793	952.593033	0.53431	0.00025503	3.0397	0.0014508	3.574	0.0017059	477.3048493463306	91.423	0.8466	91.435	91.114	91.961	0.011276					43	19	3	0	0	0	0.027866	1	11466	11466		12.959	0	1	1427100			66045	6041	46562	46628	71241	71241					0.11483994873788106
RGKPQVWGPG	10	Unmodified	_RGKPQVWGPG_					0	0	0			REV__ENST00000571654.1_1_16:30666272-30666877:+|nuORF	REV__ENST00000571654.1_1_16:30666272-30666877:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.2561645507812	2	541.298707	1080.58286	-1.2007	-0.00064995	0.19272	0.00010432	-1.008	-0.00054563	541.2985764655557	48.316	0.65779	48.04	47.775	48.433	-0.27598					43	17	3	0	0	0	0.03519	1	4815	4815		11.511	0	1	1371500	+		66046	35406	46563	46629	71242	71242					0.04579387148555725
RGKRAKDL	8	Unmodified	_RGKRAKDL_					0	0	0			REV__nc|ENSG00000085563|P08183-2|ABCB1	REV__nc|ENSG00000085563|P08183-2|ABCB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2666015625	2	472.293425	942.572297	0.35163	0.00016607	2.999	0.0014164	3.3507	0.0015825	472.29476682409387	61.304	0.55543	61.077	60.86	61.415	-0.22663					23	14	2	0	0	0	0.027866	1	7094	7094		18.324	0	1	308830	+		66047	20754	46564	46630	71243	71243					0.0987140449412891
RGKSLLFVNTL	11	Unmodified	_RGKSLLFVNTL_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	624.3756713867188	2	624.377155	1246.73976	0.38145	0.00023817	4.3927	0.0027427	4.7741	0.0029808	624.379794589076	105.22	0.4373	105.22	105.02	105.46	0.00096893					30	13	3	0	0	0	1.0075	1	13468	13468		35.152	7.2698	1	632940			66048	5004	46565	46631	71244	71244					0.12625627248235105
RGLAEQVPLKP	11	Unmodified	_RGLAEQVPLKP_					0	0	0		ENST00000501338.5_1_5:96271077-96271491:-|nuORF	ENST00000501338.5_1_5:96271077-96271491:-|nuORF	ENST00000501338.5_1_5:96271077-96271491:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.201171875	3	403.243429	1206.70846	-1.0486	-0.00042286	1.0991	0.00044319	0.050407	2.0326E-05	403.24351678357107	20.984	0.24815	20.771	20.574	20.822	-0.2128					6	4	2	0	0	0	0.024735	1	567	567		27.644	5.0643	1	11483			66049	15654	46566	46632	71245	71245					0.11337054214118325
RGLALPPQ	8	Unmodified	_RGLALPPQ_					0	0	0		ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.77532958984375	2	426.25852	850.502486	-0.43351	-0.00018479	1.226	0.00052259	0.79249	0.0003378	426.25881722141696	42.826	0.65227	42.826	42.534	43.186	0					27	17	2	0	0	0	0.027866	1	3998	3998		18.324	10.093	1	340580			66050	38196	46567	46633	71246	71246					0.07125525825506429
RGLATTDPL	9	Unmodified	_RGLATTDPL_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.3109436035156	2	472.263999	942.513445	0.08902	4.2041E-05	1.5528	0.00073335	1.6419	0.00077539	472.2646710619621	34.847	0.68523	34.847	34.408	35.093	0					26	17	2	0	0	0	0.024466	1	2577	2577		18.324	0	1	160710	+		66051	20343	46568	46634	71247	71247					0.03988883409135724
RGLDEQPPD	9	Unmodified	_RGLDEQPPD_					0	0	0			REV__ENSG00000253117|ENST00000254627|OC90	REV__ENSG00000253117|ENST00000254627|OC90	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2691040039062	2	513.74617	1025.47779	-0.68743	-0.00035317	-0.81718	-0.00041982	-1.5046	-0.00077299	513.7456787681226	79.715	0.37791	79.737	79.519	79.897	0.021446					10	8	2	0	0	0	0.024418	1	9809	9809		30.318	0	1	36503	+		66052	29036	46569	46635	71248	71248					-0.03393198838512035
RGLDFSKIL	9	Unmodified	_RGLDFSKIL_					0	0	0			REV__nc|ENSG00000128487|Q5M775-4|SPECC1	REV__nc|ENSG00000128487|Q5M775-4|SPECC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.797607421875	2	524.811116	1047.60768	-0.38661	-0.0002029	-0.071935	-3.7752E-05	-0.45854	-0.00024065	524.8108128952271	39.667	0.41829	39.667	39.425	39.843	0					21	11	3	0	0	0	0.024257	1	3448	3448		58.23	12.258	1	205350	+		66053	22984	46570	46636	71249	71249					0.08578022231290561
RGLESHIK	8	Unmodified	_RGLESHIK_					0	0	0		ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	ENSG00000108666|ENST00000577809|C17orf75	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.2721862792969	2	470.272158	938.529764	-1.142	-0.00053707	1.1969	0.00056286	0.054838	2.5789E-05	470.27264567680317	91.314	1.5131	91.165	90.609	92.122	-0.1487					100	35	5	0	0	0	1.0574	1	11179	11179		27.882	1.0861	1	5837400			66054	2922	46571	46637	71250	71250					0.058040093658974
RGLFGTPLL	9	Unmodified	_RGLFGTPLL_					0	0	0		ENST00000477706.1_1_X:53458354-53459024:-|nuORF	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	ENST00000477706.1_1_X:53458354-53459024:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2931823730469	2	487.295102	972.575651	-1.0283	-0.00050109	-2.9893	-0.0014567	-4.0176	-0.0019578	487.2935230080693	90.04	1.2078	89.877	89.429	90.637	-0.16245					81	28	4	0	0	0	0.85329	1	10988	10988		35.618	1.4457	1	2703700			66055	15114	46572	46638	71251	71251					0.08826654548136048
RGLGERANLGR	11	Unmodified	_RGLGERANLGR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.2303771972656	3	400.230294	1197.66905	0.24092	9.6422E-05	-0.58922	-0.00023582	-0.3483	-0.0001394	400.230197241662	22.087	1.5775	22.011	21.56	23.137	-0.075296					119	33	6	0	0	0	0.61955	1	718	718		68.626	5.1993	1	6459900			66056	5130	46573	46639	71252	71252					0.07812346983246243
RGLGGVQDLL	10	Unmodified	_RGLGGVQDLL_					0	0	0			REV__ENSG00000196600|ENST00000306494|SLC22A25	REV__ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.298828125	2	514.298373	1026.58219	-0.36934	-0.00018995	0.18582	9.5565E-05	-0.18353	-9.4387E-05	514.2984210471764	95.192	0.68699	95.192	94.875	95.562	0					46	15	4	0	0	0	0.96822	1	12106	12106		49.536	0.094497	1	1249400	+		66057	28203	46574	46640	71253	71253					0.0699654770885445
RGLGPHSK	8	Unmodified	_RGLGPHSK_					0	0	0		TULP4-FNDC1|1|fusion;ENSG00000164694|ENST00000297267|FNDC1	TULP4-FNDC1|1|fusion	TULP4-FNDC1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.24603271484375	2	426.245944	850.477334	0.4124	0.00017578	-0.055728	-2.3754E-05	0.35667	0.00015203	426.2457939199312	86.761	2.0846	86.782	86.157	88.241	0.021263					140	49	6	0	0	0	1.0574	1	10834	10834		27.882	1.0861	1	10449000			66058	7310	46575	46641	71254	71254					0.0461147102294035
RGLGSQGIKL	10	Unmodified	_RGLGSQGIKL_					0	0	0		ENST00000567034.5_1_16:30199450-30200005:+|nuORF	ENST00000567034.5_1_16:30199450-30200005:+|nuORF	ENST00000567034.5_1_16:30199450-30200005:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2821044921875	2	514.81419	1027.61383	-0.10551	-5.4319E-05	4.3777	0.0022537	4.2721	0.0021994	514.816292083713	65.472	0.53936	65.472	65.26	65.799	0					23	14	2	0	0	0	0.03519	1	7807	7807		30.318	0	1	345730			66059	16952	46576	46642	71255	71255					0.1011254046279646
RGLHPWLL	8	Unmodified	_RGLHPWLL_					0	0	0			REV__ENST00000347310.9_1_1:67632201-67635079:+|nuORF	REV__ENST00000347310.9_1_1:67632201-67635079:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.3233337402344	2	496.295436	990.57632	-0.20704	-0.00010275	-1.6322	-0.00081003	-1.8392	-0.00091278	496.2942319831941	64.141	0.39829	63.883	63.637	64.035	-0.25824					15	9	2	0	0	0	0.027866	1	7283	7283		35.201	10.682	1	118290	+		66060	30705	46577	46643	71256	71256					0.08065493987851369
RGLITYVTV	9	Unmodified	_RGLITYVTV_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3051452636719	2	511.305667	1020.59678	-0.37038	-0.00018938	-0.30313	-0.00015499	-0.67352	-0.00034437	511.305459622028	66.032	1.0057	66.062	65.382	66.388	0.030106					74	28	4	0	0	0	0.75397	1	7783	7783		42.396	0	1	15087000			66061	2676	46578	46644	71257	71257					0.08730619856987687
RGLKQFYQ	8	Unmodified	_RGLKQFYQ_					0	0	0			REV__WDR36-GPNMB|1|fusion	REV__WDR36-GPNMB|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2745361328125	2	520.287808	1038.56106	-0.30634	-0.00015938	-2.2829	-0.0011878	-2.5892	-0.0013472	520.2853210516919	61.612	0.51806	61.398	61.334	61.852	-0.21375					21	12	3	0	0	0	0.027866	1	6893	6893		37.159	3.2375	1	1184500	+		66062	37783	46579	46645	71258	71258					0.04332582399979401
RGLKRFQAN	9	Unmodified	_RGLKRFQAN_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.317432	1088.62031	-0.35128	-0.00019156	-1.0798	-0.00058884	-1.4311	-0.0007804	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.94809	1	10563	10563		29.15	3.5755	1	4936700			66063	2618	46580	46646	71259	71259					0.07954478414194455
RGLKRFQAN	9	Unmodified	_RGLKRFQAN_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3167724609375	2	545.317432	1088.62031	0.29621	0.00016153	-1.7677	-0.00096396	-1.4715	-0.00080243	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	0.96322	2	10572	10572;10746		27.882	2.3082	1	4888900			66064	2618	46580	46646	71260;71261	71260					0.07954478414194455
RGLLELPVL	9	Unmodified	_RGLLELPVL_					0	0	0			REV__ENSG00000104976|ENST00000221573|SNAPC2	REV__ENSG00000104976|ENST00000221573|SNAPC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.30596923828125	2	505.32386	1008.63317	-0.27634	-0.00013964	-0.84938	-0.00042921	-1.1257	-0.00056885	505.32317993012754	69.342	0.65604	69.342	69.094	69.75	0					31	16	3	0	0	0	0.02435	1	8374	8374		42.396	0	1	219690	+		66065	21487	46581	46647	71262	71262					0.12919496753693238
RGLLFRLF	8	Unmodified	_RGLLFRLF_					0	0	0			REV__ENST00000262376.10_1_16:4897931-4902890:+|nuORF	REV__ENST00000262376.10_1_16:4897931-4902890:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7894592285156	2	511.318912	1020.62327	0.59218	0.0003028	-0.087755	-4.4871E-05	0.50443	0.00025792	511.31891708232075	85.538	0.24808	85.389	85.327	85.575	-0.14967					6	5	2	0	0	0	0.027866	1	10383	10383		42.474	0	1	48861	+		66066	29661	46582	46648	71263	71263					0.11378353538975716
RGLLLQKV	8	Unmodified	_RGLLLQKV_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2304992675781	2	463.810919	925.607286	0.13178	6.112E-05	0.12874	5.9709E-05	0.26051	0.00012083	463.810855599803	36.893	0.42385	36.829	36.628	37.052	-0.063389					17	10	2	0	0	0	0.027866	1	2984	2984		24.203	0	1	193600			66067	9695	46583	46649	71264	71264					0.14150647302085417
RGLLLQKV	8	Unmodified	_RGLLLQKV_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2303771972656	2	463.810919	925.607286	0.45496	0.00021102	-0.090161	-4.1818E-05	0.3648	0.0001692	463.8106950763169	37.022	0.42947	37.054	36.797	37.226	0.032269					20	10	3	0	0	0	0.027866	1	2954	2954		40.573	21.213	1	139060			66068	9695	46583	46649	71265	71265					0.14150647302085417
RGLLLQKV	8	Unmodified	_RGLLLQKV_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.810919	925.607286	1.1205	0.00051968	-0.78814	-0.00036555	0.33232	0.00015413	463.81034993248704	37.034	0.46829	37.034	36.764	37.233	0	0.061529	-0.00056987	NaN	11.511	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188970			66069	9695	46583	46649							0.14150647302085417
RGLLPSALV	9	Unmodified	_RGLLPSALV_					0	0	0		ENST00000424161.5_1_22:28315408-28390635:+|nuORF	ENST00000424161.5_1_22:28315408-28390635:+|nuORF	ENST00000424161.5_1_22:28315408-28390635:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.3133850097656	2	463.295102	924.575651	0.37173	0.00017222	-0.34541	-0.00016003	0.026315	1.2191E-05	463.2945904709477	19.419	0.24728	19.258	19.084	19.331	-0.16079					7	4	2	0	0	0	0.024535	1	402	402		33.516	1.5607	1	13956			66070	14036	46584	46650	71266	71266					0.11034654548132039
RGLLQPPT	8	Unmodified	_RGLLQPPT_					0	0	0			REV__PARL|p.F330Lfs*23|1|0.32|ENSG00000175193|chr3:183833530-183833530|A/-|frameshift_variant	REV__PARL|p.F330Lfs*23|1|0.32|ENSG00000175193|chr3:183833530-183833530|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.27423095703125	2	441.263802	880.513051	0.40501	0.00017872	-0.66873	-0.00029509	-0.26372	-0.00011637	441.2635197826458	42.902	0.68353	42.929	42.36	43.043	0.027588					22	18	2	0	0	0	0.027866	1	3928	3928		24.203	0	1	132730	+		66071	37348	46585	46651	71267	71267					0.06801508479941276
RGLLQSRLPAP	11	Unmodified	_RGLLQSRLPAP_					0	0	0			REV__ENST00000412023.5_1_12:6982564-6991452:+|nuORF	REV__ENST00000412023.5_1_12:6982564-6991452:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.364501953125	2	604.367121	1206.71969	0.12428	7.5109E-05	-0.8283	-0.0005006	-0.70403	-0.00042549	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.0592	1	12968	12968		19.104	0	1	4482300	+		66072	31990	46586	46652	71268	71268					0.12459876308275852
RGLLYPILL	9	Unmodified	_RGLLYPILL_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7822875976562	2	529.342052	1056.66955	0.36645	0.00019398	-0.16173	-8.5611E-05	0.20472	0.00010837	529.341856071468	88.883	1.2316	88.899	88.026	89.257	0.015907					33	28	2	0	0	0	0.024412	1	11156	11156		24.203	5.8783	1	61119	+		66073	20440	46587	46653	71269	71269					0.14348373650409485
RGLLYPILL	9	Unmodified	_RGLLYPILL_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.342052	1056.66955	-0.27472	-0.00014542	0.13867	7.3404E-05	-0.13605	-7.2015E-05	529.3420118590595	88.865	0.75922	88.865	88.426	89.186	0	-0.022994	0.00025258	NaN	31.955	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56927	+		66074	20440	46587	46653							0.14348373650409485
RGLLYPILL	9	Unmodified	_RGLLYPILL_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.342052	1056.66955	0.31034	0.00016428	-0.1941	-0.00010275	0.11624	6.1529E-05	529.3417946111064	88.921	1.1871	88.9	88.139	89.326	-0.021645	0.012083	-9.9724E-05	NaN	31.955	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60197	+		66075	20440	46587	46653							0.14348373650409485
RGLNRLLTLPE	11	Unmodified	_RGLNRLLTLPE_					0	0	0		ENST00000447473.6_1_1:158978797-158978974:+|nuORF	ENST00000447473.6_1_1:158978797-158978974:+|nuORF	ENST00000447473.6_1_1:158978797-158978974:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.3849487304688	2	641.385511	1280.75647	0.39619	0.00025411	-1.2898	-0.00082725	-0.8936	-0.00057314	641.3844593600777	101.4	0.64845	101.39	101.11	101.75	-0.0054474					45	14	4	0	0	0	0.99129	1	12924	12924		38.754	9.5835	1	972200			66076	14468	46588	46654	71270	71270					0.12732128134166487
RGLPDDPVMF	10	Unmodified	_RGLPDDPVMF_					0	0	0			REV__NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	REV__NYNRIN|p.A1471Cfs*15|1|0.11|ENSG00000205978|chr14:24416158-24416159|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.3109741210938	2	573.784241	1145.55393	-0.67726	-0.0003886	3.2207	0.001848	2.5435	0.0014594	573.7857191881432	43.04	0.65354	42.814	42.336	42.989	-0.22597					25	16	2	0	0	0	0.03519	1	3852	3852		36.447	7.2972	1	181300	+		66077	28698	46589	46655	71271	71271					-0.013025182627643517
RGLQHGLA	8	Unmodified	_RGLQHGLA_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2462158203125	2	426.245944	850.477334	0.26941	0.00011483	0.022771	9.706E-06	0.29218	0.00012454	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	1.0574	1	10612	10612		25.45	0	1	14269000	+		66078	28263;19723	46590	46656	71272	71272					0.0461147102294035
RGLRCLGALL	10	Unmodified	_RGLRCLGALL_					0	0	0		ENSG00000160117|ENST00000404085|ANKLE1;ENST00000596099.1_1_19:17392905-17393816:+|nuORF;nc|ENSG00000160117|Q8NAG6-1|ANKLE1;ENST00000404085.5_1_19:17392508-17397358:+|nuORF;ENST00000596626.1_1_19:17392705-17393630:+|nuORF	ENSG00000160117|ENST00000404085|ANKLE1;ENST00000596626.1_1_19:17392705-17393630:+|nuORF	ENSG00000160117|ENST00000404085|ANKLE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3058471679688	2	536.326411	1070.63827	-1.2771	-0.00068496	-3.2107	-0.001722	-4.4878	-0.0024069	536.3252774835237	47.756	0.52431	47.815	47.769	48.294	0.059097					23	14	2	0	0	0	0.03519	1	4828	4828		37.159	0	1	3856000			66079	6783;17434	46591	46657	71273	71273					0.10577477344691033
RGLRPPPRAS	10	Unmodified	_RGLRPPPRAS_					0	0	0			REV__SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|9|2|sense	REV__SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|9|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8297119140625	2	553.830706	1105.64686	0.070138	3.8845E-05	-1.4657	-0.00081177	-1.3956	-0.00077293	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.1286	1	10842	10842		25.574	1.0549	1	5986700	+		66080	37635	46592	46658	71274	71274					0.09826167305504896
RGLRRRSPGR	10	Unmodified	_RGLRRRSPGR_					0	0	0			REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8720092773438	2	605.871228	1209.7279	0.74452	0.00045108	0.78835	0.00047764	1.5329	0.00092872	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	1.1088	1	12254	12254		31.53	5.9558	1	1081300	+		66081	23166	46593	46659	71275	71275					0.13142868068257485
RGLRSKKMN	9	Unmodified	_RGLRSKKMN_					0	0	0			REV__nc|ENSG00000183242|Q06250|WT1-AS	REV__nc|ENSG00000183242|Q06250|WT1-AS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3165283203125	2	545.319117	1088.62368	-0.6354	-0.0003465	-3.849	-0.002099	-4.4844	-0.0024455	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.82115	1	11234	11234		37.812	2.1932	1	11705000	+		66082	31721	46594	46660	71276	71276					0.08291405196541746
RGLSAPPPS	9	Unmodified	_RGLSAPPPS_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7879638671875	2	441.245609	880.476666	-0.85519	-0.00037735	1.7653	0.00077893	0.91011	0.00040158	441.2460011511977	40.512	0.69896	40.362	40.078	40.777	-0.1497					29	18	2	0	0	0	0.024261	1	3520	3520		23.523	0	1	327450	+		66083	20433	46595	46661	71277	71277					0.031646315832290384
RGLSAPPPS	9	Unmodified	_RGLSAPPPS_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.7881164550781	2	441.245609	880.476666	-0.98041	-0.0004326	1.1894	0.00052483	0.209	9.2222E-05	441.24595461420637	40.67	0.61278	40.439	40.235	40.848	-0.2303					25	16	2	0	0	0	0.024344	1	3537	3537		23.523	0	1	334050	+		66084	20433	46595	46661	71278	71278					0.031646315832290384
RGLSGRRFL	9	Unmodified	_RGLSGRRFL_					0	0	0			REV__ENST00000394236.7_1_3:93692655-93692814:-|nuORF	REV__ENST00000394236.7_1_3:93692655-93692814:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.3191528320312	2	531.319974	1060.6254	-1.1987	-0.0006369	-0.31438	-0.00016704	-1.5131	-0.00080394	531.3196752837498	93.75	1.1088	93.61	93.223	94.331	-0.13995					100	25	5	0	0	0	0.97455	1	11540	11540		25.574	0	1	3682600	+		66085	31665	46596	46662	71279	71279					0.09750782276796599
RGLSKHTT	8	Unmodified	_RGLSKHTT_					0	0	0		PHF3|p.L805R|1|0.38|ENSG00000118482|chr6:63691961-63691961|T/G|missense_variant	PHF3|p.L805R|1|0.38|ENSG00000118482|chr6:63691961-63691961|T/G|missense_variant	PHF3|p.L805R|1|0.38|ENSG00000118482|chr6:63691961-63691961|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2744445800781	2	450.256508	898.498464	-0.17282	-7.7813E-05	2.8446	0.0012808	2.6718	0.001203	450.25724602658437	92.329	0.73898	92.207	91.848	92.587	-0.12242					55	17	5	0	0	0	0.027866	1	11310	11310		44.117	8.4985	1	681190			66086	18963	46597	46663	71280	71280					0.045154363318033575
RGLSQEGT	8	Unmodified	_RGLSQEGT_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;RNF213-CSNK1D|2|fusion;RNF213-CSNK1D|1|fusion;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;RNF213|p.K345Efs*52|1|0.28|ENSG00000173821|chr17:80289753-80289754|-/G|frameshift_variant;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.2188720703125	2	424.217049	846.419545	-0.039211	-1.6634E-05	3.6907	0.0015657	3.6515	0.001549	424.2185373562743	94.954	1.5536	94.817	94.213	95.766	-0.13779					61	35	2	0	0	0	0.94517	1	11715	11715		45.952	1.8352	1	355630			66087	8414;18525	46598	46664	71281	71281					-0.009808356931443996
RGLVILEPL	9	Unmodified	_RGLVILEPL_					0	0	0		nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;ENSG00000158113|ENST00000339777|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.3073425292969	2	505.32386	1008.63317	-0.96004	-0.00048513	3.5445	0.0017911	2.5844	0.001306	505.3247045705781	84.125	0.85664	84.053	83.571	84.427	-0.072769					34	19	3	0	0	0	0.024539	1	10480	10480		20.947	0	1	58988			66088	6646	46599	46665	71282	71282					0.12919496753693238
RGLVVFFF	8	Unmodified	_RGLVVFFF_					0	0	0		ENST00000475185.5_1_18:20877516-20877840:-|nuORF	ENST00000475185.5_1_18:20877516-20877840:-|nuORF	ENST00000475185.5_1_18:20877516-20877840:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.78857421875	2	492.786913	983.559273	0.71678	0.00035322	2.3628	0.0011644	3.0796	0.0015176	492.78797359409566	20.666	0.58994	20.734	20.514	21.103	0.068901					33	11	4	0	0	0	1.0472	1	540	540		29.842	0.69198	1	628100			66089	15052	46600	46666	71283	71283					0.06683573382042596
RGLWRRRGLV	10	Unmodified	_RGLWRRRGLV_					0	0	0		ENST00000249750.8_1_15:58358012-58358582:-|nuORF	ENST00000249750.8_1_15:58358012-58358582:-|nuORF	ENST00000249750.8_1_15:58358012-58358582:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	635.38330078125	2	634.894172	1267.77379	0.12287	7.8009E-05	-3.1533	-0.002002	-3.0305	-0.001924	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0781	1	13057	13057		35.618	2.8059	1	1729500			66090	11343	46601	46667	71284	71284					0.15061513250498137
RGMGFLMR	8	Unmodified	_RGMGFLMR_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.27166748046875	2	484.251857	966.489161	-0.43152	-0.00020897	-2.3258	-0.0011263	-2.7573	-0.0013352	484.25024678796603	27.354	0.14691	27.354	27.251	27.398	0					5	3	2	0	0	0	0.027866	1	1485	1485		35.201	9.7505	1	39649			66091	1896	46602	46668	71285	71285					0.0045762845027184085
RGMHNLTLLS	10	Unmodified	_RGMHNLTLLS_					0	0	0			REV__ENSG00000197658|ENST00000612278|SLC22A24	REV__ENSG00000197658|ENST00000612278|SLC22A24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.3092041015625	2	571.310958	1140.60736	-1.3099	-0.00074839	-1.9681	-0.0011244	-3.278	-0.0018728	571.3096793882798	40.72	0.92237	40.49	40.196	41.119	-0.23029					58	24	4	0	0	0	1.0508	1	3533	3533		39.253	2.8061	1	2638800	+		66092	28336	46603	46669	71286	71286					0.0426827923977271
RGMRFSIDV	9	Unmodified	_RGMRFSIDV_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8080444335938	2	540.784576	1079.5546	-0.31106	-0.00016821	4.358	0.0023567	4.047	0.0021885	540.7861881259398	63.381	0.65108	63.381	62.98	63.631	0					41	17	3	0	0	0	0.024495	1	7446	7446		26.693	3.6504	1	801840			66093	3335	46604	46670	71287	71287					0.018003211769382688
RGMRFSIDV	9	Unmodified	_RGMRFSIDV_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.784576	1079.5546	-0.42187	-0.00022814	4.8287	0.0026113	4.4069	0.0023832	540.7867575550276	63.634	0.37464	63.407	63.174	63.549	-0.22773	0.012834	0.00027972	NaN	24.519	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314570			66094	3335	46604	46670							0.018003211769382688
RGMRSPPPPA	10	Unmodified	_RGMRSPPPPA_					0	0	0			REV__SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|42|3|anti-sense	REV__SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|42|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7738647460938	2	533.284743	1064.55493	-0.32615	-0.00017393	-4.3966	-0.0023447	-4.7228	-0.0025186	533.281945086358	47.438	0.97279	47.168	46.595	47.567	-0.26939					31	23	2	0	0	0	0.03519	1	4675	4675		39.253	27.046	1	355920	+		66095	37660	46605	46671	71288	71288					0.025237408968223463
RGMRSPPPPA	10	Unmodified	_RGMRSPPPPA_					0	0	0			REV__SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|42|3|anti-sense	REV__SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|42|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7742919921875	2	533.284743	1064.55493	-0.38169	-0.00020355	-4.179	-0.0022286	-4.5607	-0.0024322	533.281916429139	47.378	0.5306	47.184	46.886	47.416	-0.19387					24	13	3	0	0	0	0.03519	1	4654	4654		32.812	20.606	1	407550	+		66096	37660	46605	46671	71289	71289					0.025237408968223463
RGMYEDLRQM	10	Unmodified	_RGMYEDLRQM_					0	0	0		ENSG00000220948|ENST00000534741|TRIM51G	ENSG00000220948|ENST00000534741|TRIM51G	ENSG00000220948|ENST00000534741|TRIM51G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2663269042969	3	433.537518	1297.59073	0.0033459	1.4506E-06	-0.23993	-0.00010402	-0.23658	-0.00010257	433.5372273599893	24.433	0.50365	24.259	24.007	24.511	-0.17484					18	11	2	0	0	0	0.03519	1	1077	1077		20.03	0	1	67338			66097	10608	46606	46672	71290	71290					-0.04616589708530228
RGNFPAHPVN	10	Unmodified	_RGNFPAHPVN_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.7667846679688	2	554.785964	1107.55738	-0.27568	-0.00015294	0.31869	0.0001768	0.043004	2.3858E-05	554.7852640679638	53.026	0.66796	53.026	52.634	53.302	0					38	17	3	0	0	0	0.03519	1	5752	5752		31.53	0	1	305780			66098	1110	46607	46673	71291	71291					0.007899126261236233
RGNGLGWGQ	9	Unmodified	_RGNGLGWGQ_					0	0	0			REV__ENST00000493077.1_1_1:156446731-156449561:-|nuORF	REV__ENST00000493077.1_1_1:156446731-156449561:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2811584472656	2	472.738483	943.462413	-0.46427	-0.00021948	-3.2178	-0.0015212	-3.682	-0.0017406	472.73640382751995	53.93	0.39925	53.732	53.556	53.955	-0.19739					16	12	2	0	0	0	0.024457	1	5659	5659		21.96	0	1	219880	+		66099	33755	46608	46674	71292	71292					-0.011580208450482132
RGNGWVKP	8	Unmodified	_RGNGWVKP_					0	0	0		ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7552185058594	2	457.253769	912.492984	-0.086677	-3.9633E-05	-4.0684	-0.0018603	-4.1551	-0.0018999	457.25181862877633	33.056	0.77105	32.825	32.304	33.075	-0.23107					31	18	3	0	0	0	0.027866	1	2269	2269		7.6903	0	1	238630			66100	8499	46609	46675	71293	71293					0.03323757539988037
RGNMIITTDIP	11	Oxidation (M)	_RGNM(Oxidation (M))IITTDIP_		RGNM(1)IITTDIP		RGNM(46)IITTDIP	0	0	1			REV__nc|ENSG00000135074|Q9H013|ADAM19	REV__nc|ENSG00000135074|Q9H013|ADAM19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2206726074219	3	416.220184	1245.63872	-0.19188	-7.9863E-05	2.0276	0.00084391	1.8357	0.00076405	416.2207044267205	24.555	2.191	24.38	23.612	25.803	-0.17484					143	51	4	0	0	0	0.95911	1	1083	1083		45.908	6.9485	1	1895600	+		66101	36684	46610	46676	71294	71294		970			0.025728074831931735
RGNPMLKV	8	Unmodified	_RGNPMLKV_					0	0	0			REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__nc|ENSG00000140675|P31639-2|SLC5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2395324707031	2	457.765655	913.516756	-0.017586	-8.0505E-06	-3.5938	-0.0016451	-3.6114	-0.0016532	457.76377082465564	33.908	0.59113	33.904	33.561	34.152	-0.0045624					34	14	3	0	0	0	0.027866	1	2446	2446		38.806	8.9646	1	944500	+		66102	36719	46611	46677	71295	71295					0.056538549821539164
RGNSFSHIS	9	Unmodified	_RGNSFSHIS_					0	0	0			REV__ENST00000567680.1_1_15:66063956-66064049:-|nuORF	REV__ENST00000567680.1_1_15:66063956-66064049:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7742919921875	2	502.749047	1003.48354	-1.0768	-0.00054134	-2.8715	-0.0014436	-3.9483	-0.001985	503.24909510648195	90.29	0.87285	90.29	90.015	90.887	0					25	20	2	0	0	0	0.024319	1	11416	11416		56.721	3.3696	1	31106	+		66103	35323	46612	46678	71296	71296					-0.018060555361898878
RGNTQQIR	8	Unmodified	_RGNTQQIR_					0	0	0			REV__EIF1|p.R38T|1|0.34|ENSG00000173812|chr17:41689859-41689859|G/C|missense_variant	REV__EIF1|p.R38T|1|0.34|ENSG00000173812|chr17:41689859-41689859|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2671813964844	2	486.770314	971.526075	0.1661	8.085E-05	-3.7907	-0.0018452	-3.6246	-0.0017644	486.7684705158948	98.666	0.55867	98.5	98.115	98.674	-0.1663					19	12	2	0	0	0	0.027866	1	12193	12193		23.042	5.6775	1	69883	+		66104	19736	46613	46679	71297	71297					0.039173395920443
RGPALPKVK	9	Unmodified	_RGPALPKVK_					0	0	0		nc|ENSG00000165300|O94991-2|SLITRK5;ENSG00000165300|ENST00000683689|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2569885253906	2	483.316369	964.618185	-0.64827	-0.00031332	0.37666	0.00018205	-0.27161	-0.00013127	483.3165079682916	36.419	0.62917	36.377	36.101	36.73	-0.042454					31	16	3	0	0	0	0.024541	1	2930	2930		15.642	0	1	186840			66105	7395	46614	46680	71298	71298					0.1344604967637224
RGPAVVPGPSH	11	Unmodified	_RGPAVVPGPSH_					0	0	0			REV__ENST00000269321.11_1_17:79826257-79826755:-|nuORF	REV__ENST00000269321.11_1_17:79826257-79826755:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2957763671875	2	537.296165	1072.57778	-1.443	-0.00077534	0.30136	0.00016192	-1.1417	-0.00061342	537.2963379348083	37.75	1.0038	37.75	37.195	38.199	0					85	28	4	0	0	0	0.98904	1	3069	3069		39.253	1.4413	1	14350000	+		66106	29788	46615	46681	71299	71299					0.044390832859335205
RGPFSMSCWA	10	Unmodified	_RGPFSMSCWA_					0	0	0		SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|77|3|anti-sense	SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|77|3|anti-sense	SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|77|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2738647460938	2	571.249511	1140.48447	-0.047486	-2.7126E-05	0.47657	0.00027224	0.42908	0.00024511	571.2487466061187	56.607	0.47192	56.44	56.165	56.637	-0.1672					16	11	2	0	0	0	0.03519	1	6166	6166		39.253	12.206	1	442060			66107	38021	46616	46682	71300	71300					-0.08015300483134524
RGPFTARRA	9	Unmodified	_RGPFTARRA_					0	0	0			REV__ENST00000381765.7_1_2:10443830-10444034:+|nuORF	REV__ENST00000381765.7_1_2:10443830-10444034:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.314453125	2	516.296499	1030.57845	0.22105	0.00011413	-1.7305	-0.00089343	-1.5094	-0.0007793	516.2954709347875	18.064	0.2942	17.932	17.811	18.105	-0.13147					12	5	3	0	0	0	0.024539	1	224	224		20.947	0	1	29563	+		66108	31523	46617	46683	71301	71301					0.06437922725649514
RGPGAHLVGK	10	Unmodified	_RGPGAHLVGK_					0	0	0			REV__ENSG00000257093|ENST00000536163|DENND11	REV__ENSG00000257093|ENST00000536163|DENND11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.3223876953125	2	496.293425	990.572297	-0.38929	-0.0001932	2.7896	0.0013844	2.4003	0.0011912	496.29455410419104	64.048	0.40305	63.82	63.585	63.988	-0.22773					15	9	2	0	0	0	0.03519	1	7283	7283		14.865	2.658	1	162820	+		66109	29085	46618	46684	71302	71302					0.0766340449413292
RGPGEKQDGI	10	Unmodified	_RGPGEKQDGI_					0	0	0		ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.778564453125	2	528.775262	1055.53597	5.0564	0.0026737	1.9826	0.0010484	7.039	0.003722	528.7761343111431	17.2	0.34443	16.949	16.835	17.179	-0.25049					10	6	3	0	0	0	1.0816	1	127	127		35.152	4.8343	1	87703			66110	16402	46619	46685	71303	71303					0.0104248280676984
RGPGGRGLA	9	Unmodified	_RGPGGRGLA_					0	0	0		ENST00000434764.1_1_2:105486345-105489033:-|nuORF	ENST00000434764.1_1_2:105486345-105489033:-|nuORF	ENST00000434764.1_1_2:105486345-105489033:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.74371337890625	2	420.743568	839.472583	-0.4771	-0.00020074	0.55678	0.00023426	0.07968	3.3525E-05	420.7438210366682	27.588	1.4098	27.588	27.286	28.696	0					86	35	4	0	0	0	0.80658	2	1531	1519;1531		38.806	5.2906	1	9148300			66111	14251	46620	46686	71304;71305	71305					0.04642586880163435
RGPGLAGLKP	10	Unmodified	_RGPGLAGLKP_					0	0	0			REV__ENST00000489643.6_1_9:34649384-34650059:+|nuORF	REV__ENST00000489643.6_1_9:34649384-34650059:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7658996582031	2	483.298176	964.581799	0.41739	0.00020172	-3.4007	-0.0016436	-2.9833	-0.0014418	483.2977716640495	47.255	0.59531	47.102	46.776	47.371	-0.15301					41	15	4	0	0	0	0.03519	1	4718	4718		24.519	0	1	567400	+		66112	33676	46621	46687	71306	71306					0.09809172779648634
RGPGPLTL	8	Unmodified	_RGPGPLTL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.7452697753906	2	405.745245	809.475937	0.82292	0.00033389	-0.98495	-0.00039964	-0.16203	-6.5744E-05	405.74489255377216	45.461	1.8866	45.461	45.043	46.93	0					131	53	5	0	0	0	0.50239	2	4389	4389;4411		85.359	5.4203	1	47129000			66113	1220	46622	46688	71307;71308	71307					0.06357836934171246
RGPGPLTL	8	Unmodified	_RGPGPLTL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	2	405.745245	809.475937	0.018192	7.3814E-06	-0.17367	-7.0465E-05	-0.15547	-6.3083E-05	405.74522775332235	45.548	2.0127	45.396	45.041	47.054	-0.15154					123	56	4	0	0	0	0.46709	1	4417	4417		88.643	0	1	52703000			66114	1220	46622	46688	71309	71309					0.06357836934171246
RGPGPLTL	8	Unmodified	_RGPGPLTL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.753173828125	2	405.745245	809.475937	1.5373	0.00062374	-0.82025	-0.00033281	0.71703	0.00029093	405.7446313913963	45.406	2.3016	45.45	44.966	47.267	0.043877					142	65	5	0	0	0	0.6248	1	4321	4321		73.975	5.49	1	48799000			66115	1220	46622	46688	71310	71310					0.06357836934171246
RGPGSLPF	8	Unmodified	_RGPGSLPF_					0	0	0		ENST00000451977.1_1_2:131450309-131450510:-|nuORF	ENST00000451977.1_1_2:131450309-131450510:-|nuORF	ENST00000451977.1_1_2:131450309-131450510:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.7281799316406	2	415.729595	829.444637	-0.24466	-0.00010171	-2.6819	-0.001115	-2.9266	-0.0012167	415.7283727920647	17.645	0.44872	17.439	17.265	17.714	-0.20669					17	8	3	0	0	0	1.0574	1	211	211		26.796	0	1	138110			66116	14528	46623	46689	71311	71311					0.02309263900087899
RGPIRQSQ	8	Unmodified	_RGPIRQSQ_					0	0	0			REV__ENSG00000146285|ENST00000369020|SCML4	REV__ENSG00000146285|ENST00000369020|SCML4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2674560546875	2	471.267407	940.520262	0.090873	4.2826E-05	-0.14809	-6.979E-05	-0.057217	-2.6964E-05	471.2671812339781	20.014	0.91484	19.909	19.214	20.129	-0.10477					37	18	4	0	0	0	0.87148	1	472	472		53.351	3.9099	1	525090	+		66117	24477	46624	46690	71312	71312					0.04762241080379681
RGPKPILII	9	Unmodified	_RGPKPILII_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|44|1|sense;REV__nc|ENSG999|O00370|L1_ORF2;REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|80|3|sense;REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.271484375	2	503.84222	1005.66989	-0.30605	-0.0001542	-0.42219	-0.00021272	-0.72824	-0.00036692	503.84193853433504	57.261	0.22705	57.357	57.165	57.392	0.095306					8	5	2	0	0	0	0.024487	1	6328	6328		24.203	11.996	1	57903	+		66118	37256;36277;36233;36260	46625	46691	71313	71313					0.16727793370273503
RGPKPKRGLGT	11	Unmodified	_RGPKPKRGLGT_					0	0	0			REV__ENST00000507678.5_1_4:177241184-177241601:+|nuORF	REV__ENST00000507678.5_1_4:177241184-177241601:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.8590087890625	2	583.859464	1165.70437	-0.41859	-0.0002444	-0.68768	-0.00040151	-1.1063	-0.00064591	583.8588726706961	96.987	1.2388	96.995	96.575	97.813	0.0089111					82	27	5	0	0	0	1.0521	1	12313	12313		24.519	0	1	1557300	+		66119	34051	46626	46692	71314	71314					0.1281500951106409
RGPKTDTDIH	10	Unmodified	_RGPKTDTDIH_					0	0	0			REV__ENSG00000197724|ENST00000359246|PHF2	REV__ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2728881835938	2	570.293819	1138.57309	-0.27417	-0.00015636	-4.3093	-0.0024576	-4.5835	-0.0026139	570.7934370298074	57.001	0.47405	56.834	56.597	57.071	-0.1672					29	12	3	0	0	0	0.03519	1	6179	6179		34.173	0	1	452830	+		66120	28340	46627	46693	71315	71315					0.009341543525124507
RGPLGRGSAA	10	Unmodified	_RGPLGRGSAA_					0	0	0			REV__ENST00000292377.3_1_7:99768105-99769260:-|nuORF	REV__ENST00000292377.3_1_7:99768105-99769260:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2674560546875	2	471.267407	940.520262	0.58846	0.00027732	-0.52761	-0.00024865	0.060846	2.8675E-05	471.2669765118884	19.758	0.90901	19.758	19.07	19.979	0					40	18	5	0	0	0	0.74632	1	453	453		64.207	3.2353	1	556160	+		66121	29949	46628	46694	71316	71316					0.047622410803683124
RGPPPPPPP	9	Unmodified	_RGPPPPPPP_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2583312988281	2	456.25852	910.502486	-0.074755	-3.4108E-05	-0.37108	-0.00016931	-0.44584	-0.00020342	456.2583876450436	32.48	3.75	32.48	31.343	35.093	0					278	97	3	0	0	0	0.31247	2	2322	2322;2517		73.975	0	1	17591000	+		66122	31793	46629	46695	71317;71318	71317					0.04365525825505756
RGPPPPPPP	9	Unmodified	_RGPPPPPPP_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2582702636719	2	456.25852	910.502486	-0.36043	-0.00016445	-0.15612	-7.123E-05	-0.51655	-0.00023568	456.25850296783176	32.466	3.7606	32.477	31.214	34.975	0.011795					259	97	3	0	0	0	0.29104	3	2179	2169;2179;2453		76.847	0	1	19003000	+		66123	31793	46629	46695	71319;71320;71321	71320					0.04365525825505756
RGPPPPPPP	9	Unmodified	_RGPPPPPPP_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2581787109375	2	456.25852	910.502486	0.10015	4.5696E-05	-0.56547	-0.000258	-0.46532	-0.0002123	456.258324860341	32.29	4.0779	32.353	30.991	35.069	0.062885					273	104	3	0	0	0	0.40179	3	2105	2105;2200;2273		65.803	0	1	17962000	+		66124	31793	46629	46695	71322;71323;71324	71322					0.04365525825505756
RGPRPQLR	8	Unmodified	_RGPRPQLR_					0	0	0			REV__SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|35|3|sense	REV__SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|35|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.75616455078125	2	490.299042	978.583531	1.6959	0.00083151	-1.499	-0.00073494	0.19696	9.657E-05	490.298087940529	19.934	1.0232	20	19.389	20.412	0.066195					39	20	3	0	0	0	0.027866	1	420	420		40.573	0	1	76634	+		66125	37642	46630	46696	71325	71325					0.09338226588261023
RGPRPRIPV	9	Unmodified	_RGPRPRIPV_					0	0	0		nc|ENSG00000149488|Q8TDI7-4|TMC2	nc|ENSG00000149488|Q8TDI7-4|TMC2	nc|ENSG00000149488|Q8TDI7-4|TMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.240966796875	2	524.330342	1046.64613	-0.041661	-2.1844E-05	1.701	0.0008919	1.6594	0.00087006	524.3309536313184	30.416	0.50002	30.267	30.056	30.556	-0.14952					16	11	2	0	0	0	0.024541	1	1903	1903		11.511	0	1	76360			66126	18375	46631	46697	71326	71326					0.12467372656442421
RGPRRLAPDL	10	Unmodified	_RGPRRLAPDL_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8428955078125	2	575.843813	1149.67307	-0.77612	-0.00044693	-0.64929	-0.00037389	-1.4254	-0.00082081	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0992	1	11328	11328		32.812	0	1	6382400	+		66127	26598	46632	46698	71327	71327					0.10422436476983421
RGPRVQRPP	9	Unmodified	_RGPRVQRPP_					0	0	0		ENST00000571368.5_1_17:4442349-4442634:-|nuORF	ENST00000571368.5_1_17:4442349-4442634:-|nuORF	ENST00000571368.5_1_17:4442349-4442634:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7972412109375	2	531.817599	1061.62064	-1.0622	-0.00056488	0.10809	5.7483E-05	-0.95409	-0.0005074	531.8176003056811	90.238	1.5018	90.083	89.264	90.766	-0.1552					77	35	3	0	0	0	0.024506	1	11108	11108		23.042	0	1	769910			66128	17036	46633	46699	71328	71328					0.09229898134026371
RGPSGLPGSPG	11	Unmodified	_RGPSGLPGSPG_					0	0	0		ENSG00000084636|ENST00000373672|COL16A1;nc|ENSG00000084636|Q07092-2|COL16A1;ENST00000488128.6_1_1:32121928-32135507:-|nuORF	ENSG00000084636|ENST00000373672|COL16A1	ENSG00000084636|ENST00000373672|COL16A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2613220214844	2	491.259248	980.503943	-0.067737	-3.3277E-05	3.0896	0.0015178	3.0219	0.0014845	491.26080690601026	104.97	1.7252	104.97	103.85	105.58	-0.0015945					76	49	3	0	0	0	0.024756	1	13272	13272		36.447	0	1	842110			66129	1772	46634	46700	71329	71329					0.012911151236153273
RGPVGAKIQ	9	Unmodified	_RGPVGAKIQ_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.3132629394531	2	463.282526	924.550499	0.46847	0.00021703	-0.30124	-0.00013956	0.16722	7.7471E-05	463.28225941803294	19.17	0.49471	19.009	18.787	19.282	-0.16079					19	9	3	0	0	0	0.024506	1	391	391		38.806	6.8513	1	48604	+		66130	21857	46635	46701	71330	71330					0.0852059974556596
RGPVLEVIV	9	Unmodified	_RGPVLEVIV_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.3059387207031	2	491.30821	980.601866	1.0901	0.00053557	-1.3297	-0.00065327	-0.23957	-0.0001177	491.3074112915771	59.403	1.849	59.403	59.035	60.884	0					76	49	3	0	0	0	0.62163	1	6777	6777		51.335	12.529	1	3423700			66131	3189	46636	46702	71331	71331					0.11078923719605882
RGQATFQQSK	10	Unmodified	_RGQATFQQSK_					0	0	0		ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8038940429688	2	575.801811	1149.58907	0.92572	0.00053303	0.95876	0.00055205	1.8845	0.0010851	575.8022313057114	70.948	0.93607	70.655	70.411	71.347	-0.29292					45	22	3	0	0	0	1.0002	1	8558	8558		45.972	0	1	1879400			66132	14157	46637	46703	71332	71332					0.020258605894241555
RGQCPKGEP	9	Unmodified	_RGQCPKGEP_					0	0	0		ENST00000395253.3_1_9:99884091-99884715:+|nuORF;ENSG00000178397|ENST00000313324|FAM220A;ENST00000377689.2_1_9:38527126-38527906:+|nuORF;nc|ENSG00000176007|B1ANY3|FAM220BP	ENST00000395253.3_1_9:99884091-99884715:+|nuORF;ENST00000377689.2_1_9:38527126-38527906:+|nuORF	ENST00000377689.2_1_9:38527126-38527906:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7955017089844	2	486.240001	970.465449	1.0242	0.00049802	-1.1686	-0.00056823	-0.14439	-7.021E-05	486.2392371451108	19.926	0.63029	19.726	19.405	20.035	-0.2001					16	12	2	0	0	0	0.024457	1	498	498		37.159	0	1	26830			66133	13508;13213	46638	46704	71333	71333					-0.020965137825555757
RGQERKMNCKT	11	Unmodified	_RGQERKMNCKT_					0	0	0		ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7608642578125	3	450.895817	1349.66562	-0.5572	-0.00025124	1.0008	0.00045127	0.44362	0.00020003	450.8962147335504	22.309	0.37548	22.123	21.906	22.281	-0.18539					19	7	3	0	0	0	0.024805	1	786	786		14.779	0	1	91659			66134	15797	46639	46705	71334	71334					0.0047759282272181736
RGQEYYHY	8	Unmodified	_RGQEYYHY_					0	0	0			REV__ENSG00000184005|ENST00000328299|ST6GALNAC3	REV__ENSG00000184005|ENST00000328299|ST6GALNAC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2101440429688	2	558.24888	1114.48321	-0.1345	-7.5084E-05	4.0915	0.0022841	3.957	0.002209	558.251401723471	35.109	0.19391	34.893	34.793	34.987	-0.21555					5	4	2	0	0	0	0.027866	1	2633	2633		57.811	9.8957	1	61719	+		66135	27629	46640	46706	71335	71335					-0.06945475256065947
RGQHRIPS	8	Unmodified	_RGQHRIPS_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7724609375	2	475.767575	949.520596	-0.5655	-0.00026905	0.96225	0.00045781	0.39674	0.00018876	475.768033102213	22.76	1.1808	22.834	21.931	23.112	0.073954					49	24	3	0	0	0	0.027866	1	798	798		15.642	0	1	200410	+		66136	22684	46641	46707	71336	71336					0.043816608002202884
RGQLIVND	8	Unmodified	_RGQLIVND_					0	0	0		ENST00000526766.1_1_11:112051504-112052349:+|nuORF	ENST00000526766.1_1_11:112051504-112052349:+|nuORF	ENST00000526766.1_1_11:112051504-112052349:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.28240966796875	2	457.756341	913.498129	-0.69469	-0.000318	3.0076	0.0013767	2.3129	0.0010587	457.7567448280908	34.968	1.3481	34.946	34.435	35.783	-0.021767					77	34	4	0	0	0	0.027866	1	2600	2600		20.947	0	1	1612700			66137	16129	46642	46708	71337	71337					0.03792016611942017
RGQLLPVEL	9	Unmodified	_RGQLLPVEL_					0	0	0		ENST00000532072.1_1_1:44441609-44441690:+|nuORF	ENST00000532072.1_1_1:44441609-44441690:+|nuORF	ENST00000532072.1_1_1:44441609-44441690:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8084106445312	2	512.811116	1023.60768	-1.0711	-0.00054927	-0.10522	-5.3957E-05	-1.1763	-0.00060322	512.810734928744	38.043	1.117	37.96	37.636	38.753	-0.082512					111	30	6	0	0	0	0.55828	1	3154	3154		55.504	2.1528	1	7839900			66138	16277	46643	46709	71338	71338					0.09682022231265819
RGQQVIVSY	9	Unmodified	_RGQQVIVSY_					0	0	0		ENSG00000182378|ENST00000381657|PLCXD1	ENSG00000182378|ENST00000381657|PLCXD1	ENSG00000182378|ENST00000381657|PLCXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.769287109375	2	525.290548	1048.56654	-1.1556	-0.00060702	-0.55475	-0.00029141	-1.7103	-0.00089843	525.2900636491963	33.652	0.58244	33.487	33.362	33.944	-0.16565					23	14	2	0	0	0	0.024323	1	2463	2463		44.117	0	1	457710			66139	9133	46644	46710	71339	71339					0.044202611917853574
RGRAWLYL	8	Unmodified	_RGRAWLYL_					0	0	0		nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1;nc|ENSG00000176783|Q96T51-3|RUFY1	nc|ENSG00000176783|Q96T51-2|RUFY1;nc|ENSG00000176783|Q96T51-3|RUFY1	nc|ENSG00000176783|Q96T51-3|RUFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7955322265625	2	517.798343	1033.58213	-0.63258	-0.00032755	-0.19521	-0.00010108	-0.82779	-0.00042863	517.7983785408373	58.033	0.98385	58.124	57.835	58.819	0.091217					68	26	4	0	0	0	0.75307	1	6498	6498		62.978	5.1671	1	5101600			66140	8669;18543	46645	46711	71340	71340					0.06668592499499937
RGRCVSLAR	9	Unmodified	_RGRCVSLAR_					0	0	0			REV__ENST00000436072.6_1_7:37955747-37956332:-|nuORF	REV__ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2920837402344	2	509.290359	1016.56617	-0.016181	-8.2407E-06	1.1768	0.00059934	1.1606	0.0005911	509.289872852067	61.178	0.64506	61.178	60.884	61.529	0					24	16	2	0	0	0	0.024477	1	7114	7114		5.5578	0	1	166730	+		66141	32457	46646	46712	71341	71341					0.05854562990953127
RGREFAKSL	9	Unmodified	_RGREFAKSL_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8060913085938	2	532.30399	1062.59343	-0.3865	-0.00020574	3.4069	0.0018135	3.0204	0.0016078	532.3053098016347	58.715	0.71778	58.527	58.18	58.898	-0.18795					24	17	2	0	0	0	0.024495	1	6423	6423		26.693	0	1	938430			66142	3351	46647	46713	71342	71342					0.06463369802986563
RGRGQLRQRGV	11	Unmodified	_RGRGQLRQRGV_					0	0	0			REV__ENST00000418997.1_3_8:101964539-101964668:-|nuORF	REV__ENST00000418997.1_3_8:101964539-101964668:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8814086914062	2	641.881793	1281.74903	0.34308	0.00022022	0.59623	0.00038271	0.93931	0.00060293	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	0.99553	1	11652	11652		37.812	5.8567	1	1209200	+		66143	32134	46648	46714	71343	71343					0.11942833377088391
RGRHLDVE	8	Unmodified	_RGRHLDVE_					0	0	0		ENST00000396355.5_1_16:15818353-15818767:+|nuORF	ENST00000396355.5_1_16:15818353-15818767:+|nuORF	ENST00000396355.5_1_16:15818353-15818767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.271240234375	2	491.264865	980.515176	-0.1676	-8.2336E-05	1.9335	0.00094986	1.7659	0.00086753	491.26575420211674	34.053	0.62823	34.053	33.816	34.444	0					31	15	3	0	0	0	0.027866	1	2491	2491		11.511	0	1	371620			66144	13551	46649	46715	71344	71344					0.024139372177387486
RGRHLVLLD	9	Unmodified	_RGRHLVLLD_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.792236328125	2	539.827632	1077.64071	-0.63907	-0.00034499	1.0554	0.00056974	0.41633	0.00022475	539.8279777711035	66.22	0.34424	65.939	65.711	66.056	-0.28148					16	8	2	0	0	0	0.024021	1	7820	7820		40.778	11.608	1	197880			66145	2598	46650	46716	71345	71345					0.1049964907397225
RGRILQQH	8	Unmodified	_RGRILQQH_					0	0	0		ENSG00000141665|ENST00000419743|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	ENSG00000141665|ENST00000419743|FBXO15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.297119140625	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	1.0574	1	358	358		26.796	0	1	5749100			66146	5516	46651	46717	71346	71346					0.0754192272564751
RGRKHELNRP	10	Unmodified	_RGRKHELNRP_					0	0	0			REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF	REV__ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.2460021972656	3	421.577805	1261.71158	3.4614	0.0014592	2.7337	0.0011524	6.195	0.0026117	421.57892101481434	17.275	0.29704	17.275	17.102	17.399	0					7	5	2	0	0	0	0.03519	1	153	153		10.587	0	1	29090	+		66147	28237	46652	46718	71347	71347					0.09119742111488449
RGRKKKKG	8	Unmodified	_RGRKKKKG_					0	0	0			REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2	REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2838439941406	2	479.32506	956.635566	-0.17833	-8.5476E-05	1.6861	0.0008082	1.5078	0.00072273	479.32582608990987	75.637	0.10571	75.393	75.303	75.409	-0.24455					4	2	2	0	0	0	0.027866	1	9245	9245		20.482	0	1	321050	+		66148	21017	46653	46719	71348	71348					0.15551390002030985
RGRKREKRR	9	Unmodified	_RGRKREKRR_					0	0	0			REV__ENST00000464142.5_1_2:242326611-242343267:+|nuORF	REV__ENST00000464142.5_1_2:242326611-242343267:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.393310546875	2	621.392328	1240.7701	-1.2361	-0.00076809	2.2974	0.0014276	1.0613	0.00065947	621.3936308468791	103.45	0.61192	103.32	103.09	103.7	-0.12783					38	14	4	0	0	0	0.96322	1	12890	12890		27.882	0	1	482820	+		66149	32961	46654	46720	71349	71349					0.15934843476634342
RGRKRSPRAKG	11	Unmodified	_RGRKRSPRAKG_					0	0	0			REV__ENSG00000156853|ENST00000287461|ZNF689	REV__ENSG00000156853|ENST00000287461|ZNF689	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.8948364257812	2	634.892161	1267.76977	-0.8856	-0.00056226	1.3285	0.00084344	0.44288	0.00028118	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.0655	1	12982	12982		20.837	1.7336	1	1402800	+		66150	25092	46655	46721	71350	71350					0.14659423756779688
RGRKVRAQV	9	Unmodified	_RGRKVRAQV_					0	0	0		ENST00000265354.5_1_6:43139129-43139510:+|nuORF	ENST00000265354.5_1_6:43139129-43139510:+|nuORF	ENST00000265354.5_1_6:43139129-43139510:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.3021850585938	2	535.338698	1068.66284	-0.7065	-0.00037822	2.3391	0.0012522	1.6326	0.00087399	535.3398208097778	46.011	0.6789	46.062	45.83	46.509	0.051395					52	19	4	0	0	0	0.024294	1	4460	4460		45.952	3.5558	1	462150			66151	11590	46656	46722	71351	71351					0.13125873542412592
RGRLAKRA	8	Unmodified	_RGRLAKRA_					0	0	0			REV__ENSG00000177558|ENST00000324675|FAM187B	REV__ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	2	464.301585	926.588616	0.60427	0.00028056	-3.2848	-0.0015251	-2.6805	-0.0012446	464.3000792260614	41.787	0.82417	41.81	41.394	42.218	0.023006					42	23	3	0	0	0	0.027866	1	3727	3727		13.775	0	1	857090	+		66152	27124	46657	46723	71352	71352					0.122385304508839
RGRLEQLGGLL	11	Unmodified	_RGRLEQLGGLL_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.21466064453125	3	404.578811	1210.7146	0.18747	7.5845E-05	1.1211	0.00045359	1.3086	0.00052943	404.57869890347024	28.667	0.37059	28.667	28.449	28.82	0					15	8	3	0	0	0	0.024731	1	1670	1670		24.232	15.997	1	34276			66153	5202	46658	46724	71353	71353					0.11767572445683072
RGRLLPSKNPG	11	Unmodified	_RGRLLPSKNPG_					0	0	0		ENST00000379089.5_1_9:34400006-34400129:-|nuORF	ENST00000379089.5_1_9:34400006-34400129:-|nuORF	ENST00000379089.5_1_9:34400006-34400129:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8568115234375	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0075	1	11510	11510		35.152	3.6222	1	5655800			66154	13255	46659	46725	71354	71354					0.11018705648439209
RGRLNPPP	8	Unmodified	_RGRLNPPP_					0	0	0			REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.3027038574219	2	453.767043	905.519533	0.16258	7.3775E-05	0.77228	0.00035044	0.93487	0.00042421	453.76823410575804	61.006	0.90108	61.006	60.473	61.374	0					46	23	3	0	0	0	0.027866	1	6963	6963		35.201	0	1	398340	+		66155	23045	46660	46726	71355	71355					0.06299446431319211
RGRLNPPP	8	Unmodified	_RGRLNPPP_					0	0	0			REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.767043	905.519533	-0.28378	-0.00012877	3.6166	0.0016411	3.3329	0.0015123	453.7684221071845	60.966	0.48641	61.037	60.79	61.276	0.071125	0.016088	0.0003345	NaN	26.796	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355490	+		66156	23045	46660	46726							0.06299446431319211
RGRLPKKP	8	Unmodified	_RGRLPKKP_					0	0	0			REV__ENSG00000116544|ENST00000373347|DLGAP3	REV__ENSG00000116544|ENST00000373347|DLGAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.266357421875	2	476.314161	950.613768	-0.4309	-0.00020525	-3.6622	-0.0017444	-4.0931	-0.0019496	476.3123581960447	31.622	0.19243	31.47	31.342	31.534	-0.15231					6	4	2	0	0	0	0.027866	1	2103	2103		18.324	0	1	40241	+		66157	22281	46661	46727	71356	71356					0.13648585253451984
RGRMPPTQPTH	11	Unmodified	_RGRMPPTQPTH_					0	0	0		nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.57928466796875	3	426.555901	1276.64587	0.43473	0.00018543	3.6212	0.0015446	4.0559	0.0017301	426.89146547948377	36.249	0.10773	36.032	35.981	36.088	-0.21661					4	2	2	0	0	0	0.02478	1	2826	2826		32.034	11.197	1	51505			66158	9451	46662	46728	71357	71357					0.018615848742683738
RGRPGQPGL	9	Unmodified	_RGRPGQPGL_					0	0	0			REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7561340332031	2	469.26995	936.525347	-0.10806	-5.0711E-05	-3.136	-0.0014716	-3.2441	-0.0015223	469.2684376563051	93.822	0.72534	93.822	93.542	94.267	-0.00023651					30	17	2	0	0	0	0.024541	1	11957	11957		18.324	3.6603	1	439970	+		66159	20519	46663	46729	71358	71358					0.0545454494298383
RGRPPKNPPS	10	Unmodified	_RGRPPKNPPS_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.2719116210938	2	553.314889	1104.61522	-0.46431	-0.00025691	4.1846	0.0023154	3.7203	0.0020585	553.8177524859674	77.839	0.37119	77.855	77.618	77.989	0.015907					15	8	2	0	0	0	0.03519	1	9516	9516		49.536	1.8787	1	144710			66160	1690	46664	46730	71359	71359					0.06710174551540149
RGRPSKLEI	9	Unmodified	_RGRPSKLEI_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.8085327148438	2	528.31964	1054.62473	-0.40121	-0.00021197	-3.15	-0.0016642	-3.5512	-0.0018762	528.3178398451598	63.392	0.79337	63.392	63.161	63.954	0					33	21	3	0	0	0	0.02435	1	7461	7461		51.335	0	1	467730	+		66161	20046	46665	46731	71360	71360					0.09959942837076596
RGRPVLGG	8	Unmodified	_RGRPVLGG_					0	0	0			REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2484436035156	2	406.248486	810.48242	0.12795	5.1981E-05	-0.30485	-0.00012384	-0.17689	-7.1862E-05	406.24811937571087	90.223	1.1293	90.085	89.575	90.704	-0.13824					59	26	3	0	0	0	1.0017	1	11008	11008		37.028	0	1	760810	+		66162	29675	46666	46732	71361	71361					0.06959774885569914
RGRPVLGG	8	Unmodified	_RGRPVLGG_					0	0	0			REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	406.248486	810.48242	0.33702	0.00013691	-3.7498	-0.0015234	-3.4128	-0.0013864	406.2464734304041	89.972	2.1598	89.972	89.481	91.641	0	-0.076098	-0.002329	NaN	37.028	91	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646990	+		66163	29675	46666	46732							0.06959774885569914
RGRPVLGG	8	Unmodified	_RGRPVLGG_					0	0	0			REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	406.248486	810.48242	0.62711	0.00025476	-2.1501	-0.00087347	-1.523	-0.00061871	406.2471634518601	90.084	1.4869	90.067	89.583	91.07	-0.016716	0.019511	-0.0010292	NaN	37.028	55	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692180	+		66164	29675	46666	46732							0.06959774885569914
RGRPVLGG	8	Unmodified	_RGRPVLGG_					0	0	0			REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	406.248486	810.48242	-0.49604	-0.00020152	0.42381	0.00017217	-0.072233	-2.9345E-05	406.2483925592611	90.147	0.78003	89.992	89.652	90.432	-0.1552	-0.055822	0.0010621	NaN	37.028	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	677720	+		66165	29675	46666	46732							0.06959774885569914
RGRPVLGG	8	Unmodified	_RGRPVLGG_					0	0	0			REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	406.248486	810.48242	0.12795	5.1981E-05	-0.30485	-0.00012384	-0.17689	-7.1862E-05	406.24811937571087	90.223	1.1293	90.085	89.575	90.704	-0.13824	0.036842	0.00047005	NaN	37.028	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	760810	+		66166	29675	46666	46732							0.06959774885569914
RGRRDLCP	8	Unmodified	_RGRRDLCP_					0	0	0		nc|ENSG00000174669|Q14542-2|SLC29A2	nc|ENSG00000174669|Q14542-2|SLC29A2	nc|ENSG00000174669|Q14542-2|SLC29A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.8057861328125	2	486.761435	971.508317	-1.1985	-0.0005834	-0.68001	-0.000331	-1.8785	-0.0009144	486.7594319734026	34.542	0.80648	34.593	34.213	35.02	0.050255					49	20	5	0	0	0	0.027866	1	2497	2497		63.306	26.147	1	427400			66167	18529	46667	46733	71362	71362					0.021423010655325925
RGRRGENLF	9	Unmodified	_RGRRGENLF_					0	0	0		ENSG00000164530|ENST00000373674|PI16;nc|ENSG00000164530|Q6UXB8-2|PI16	ENSG00000164530|ENST00000373674|PI16	ENSG00000164530|ENST00000373674|PI16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8241577148438	2	552.804688	1103.59482	0.15127	8.3623E-05	1.8675	0.0010323	2.0187	0.001116	552.8058986666919	75.698	0.58057	75.71	75.471	76.051	0.011635					26	15	3	0	0	0	0.024477	1	9204	9204		20.947	0	1	216650			66168	7289	46668	46734	71363	71363					0.04717003891732929
RGRRGLPAG	9	Unmodified	_RGRRGLPAG_					0	0	0		ENST00000177694.1_1_17:45810693-45811185:+|nuORF	ENST00000177694.1_1_17:45810693-45811185:+|nuORF	ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2955322265625	2	470.283392	938.552231	0.57204	0.00026902	-1.1491	-0.00054039	-0.57703	-0.00027137	470.282735400989	18.261	0.83646	18.13	17.712	18.549	-0.13147					22	16	2	0	0	0	0.024436	1	302	302		38.806	6.8513	1	37441			66169	11120	46669	46735	71364	71364					0.0804965355416698
RGRRGLPAG	9	Unmodified	_RGRRGLPAG_					0	0	0		ENST00000177694.1_1_17:45810693-45811185:+|nuORF	ENST00000177694.1_1_17:45810693-45811185:+|nuORF	ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.283392	938.552231	3.4809	0.001637	-3.9562	-0.0018605	-0.47532	-0.00022353	470.2814778045939	18.07	0.68587	18.07	17.647	18.333	0	-0.029987	-0.0011437	NaN	38.806	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30611			66170	11120	46669	46735							0.0804965355416698
RGRRKLTA	8	Unmodified	_RGRRKLTA_					0	0	0		ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28448486328125	2	479.306867	956.599181	0.30358	0.00014551	0.015986	7.662E-06	0.31956	0.00015317	479.30750364167557	76.365	0.12026	76.376	76.285	76.405	0.011635					4	2	2	0	0	0	0.027866	1	9330	9330		8.2313	0	1	35362			66171	4440	46670	46736	71365	71365					0.1191451310529601
RGRRLKMY	8	Unmodified	_RGRRLKMY_					0	0	0		nc|ENSG00000081019|Q5VWQ0-4|RSBN1;RSBN1|p.N560Ifs*42|1|0.58|ENSG00000081019|chr1:113768369-113768369|T/-|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.7925415039062	2	540.316377	1078.6182	-0.038681	-2.09E-05	-2.3363	-0.0012623	-2.375	-0.0012832	540.3148454924983	78.646	0.98717	78.414	77.791	78.778	-0.23141					43	22	3	0	0	0	0.027866	1	9345	9345		20.482	2.1574	1	290000			66172	1702	46671	46737	71366	71366					0.0820372640473579
RGRRNTPY	8	Unmodified	_RGRRNTPY_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1;ENST00000485746.1_1_7:99030561-99032532:-|nuORF	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8085021972656	2	510.278306	1018.54206	0.15716	8.0196E-05	-3.9654	-0.0020235	-3.8082	-0.0019433	510.27557433343424	68.199	0.56844	68.218	67.967	68.536	0.018913					33	14	3	0	0	0	0.027866	1	8127	8127		25.45	7.9822	1	277240			66173	2770	46672	46738	71367	71367					0.033530458289419585
RGRRPASGR	9	Unmodified	_RGRRPASGR_					0	0	0			REV__ENST00000316610.6_1_5:89769768-89770494:-|nuORF	REV__ENST00000316610.6_1_5:89769768-89770494:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.79833984375	2	506.797198	1011.57984	-0.088919	-4.5064E-05	2.2943	0.0011627	2.2054	0.0011177	506.79838208765176	20.366	1.2294	20.142	19.533	20.762	-0.22344					50	24	4	0	0	0	0.32811	1	509	509		71.877	8.3436	1	1390200	+		66174	30281	46673	46739	71368	71368					0.07451556814407923
RGRRPGGL	8	Unmodified	_RGRRPGGL_					0	0	0		ENST00000395094.3_1_16:30543822-30545758:-|nuORF;ENST00000252799.3_1_16:30543822-30545758:-|nuORF;nc|ENSG00000169955|Q9BV97|ZNF747;ENSG00000169955|ENST00000693075|ZNF747	ENST00000395094.3_1_16:30543822-30545758:-|nuORF	ENST00000395094.3_1_16:30543822-30545758:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7479553222656	2	434.764835	867.515117	0.12739	5.5385E-05	-2.7217	-0.0011833	-2.5943	-0.0011279	434.7637328064448	65.375	0.16821	65.375	65.326	65.494	0					6	4	2	0	0	0	0.027866	1	7758	7758		44.531	0	1	555250			66175	7996	46674	46740	71369	71369					0.07605982008419687
RGRRRLPT	8	Unmodified	_RGRRRLPT_					0	0	0		nc|ENSG00000258537|P0C7T7|FRMD6-AS1	nc|ENSG00000258537|P0C7T7|FRMD6-AS1	nc|ENSG00000258537|P0C7T7|FRMD6-AS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3193359375	2	506.317766	1010.62098	-0.55107	-0.00027902	2.5015	0.0012666	1.9505	0.00098755	506.3190420082053	52.995	1.092	52.995	52.634	53.726	0					93	29	5	0	0	0	0.91239	1	5701	5701		50.025	3.2581	1	10675000			66176	18778	46675	46741	71370	71370					0.11609317853867651
RGRRSKRWL	9	Unmodified	_RGRRSKRWL_					0	0	0			REV__ENST00000416204.1_1_2:242913570-242913898:+|nuORF	REV__ENST00000416204.1_1_2:242913570-242913898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.25579833984375	3	405.58289	1213.72684	-1.3357	-0.00054175	4.1959	0.0017018	2.8601	0.00116	405.5844658621886	40.897	0.36303	40.667	40.485	40.848	-0.2303					12	9	2	0	0	0	0.024541	1	3534	3534		14.137	0	1	82221	+		66177	32072	46676	46742	71371	71371					0.12852653699360417
RGRRTREP	8	Unmodified	_RGRRTREP_					0	0	0			REV__ENSG00000198879|ENST00000397167|SFMBT2	REV__ENSG00000198879|ENST00000397167|SFMBT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8146362304688	2	514.29703	1026.57951	-1.0412	-0.00053549	-1.1931	-0.00061359	-2.2343	-0.0011491	514.2981819726498	44.833	0.55157	44.684	44.422	44.974	-0.1488					35	15	4	0	0	0	0.027866	1	4321	4321		37.159	1.5408	1	260640	+		66178	28505	46677	46743	71372	71372					0.06728137094546582
RGRSPGVP	8	Unmodified	_RGRSPGVP_					0	0	0			REV__ENST00000485811.5_1_1:44457505-44457763:+|nuORF	REV__ENST00000485811.5_1_1:44457505-44457763:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7382507324219	2	413.238119	824.461684	0.50832	0.00021006	-0.11671	-4.823E-05	0.39161	0.00016183	413.2379391644026	75.792	2.1622	75.803	74.856	77.019	0.011635					100	55	3	0	0	0	0.027866	1	9201	9201		13.775	0	1	813560	+		66179	33571	46678	46744	71373	71373					0.04243184505901354
RGRVARPPAL	10	Unmodified	_RGRVARPPAL_					0	0	0		ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	ENSG00000176769|ENST00000368642|TCERG1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.839111328125	2	546.841074	1091.66759	0.3982	0.00021775	-2.0973	-0.0011469	-1.6991	-0.00092914	546.8399841843885	99.748	1.3784	99.613	99.184	100.56	-0.13526					99	37	6	0	0	0	1.1129	1	12448	12448		17.365	0	1	10192000			66180	8668	46679	46745	71374	71374					0.12542757685150718
RGRVLVNDA	9	Unmodified	_RGRVLVNDA_					0	0	0		ENSG00000130726|ENST00000253024|TRIM28;nc|ENSG00000130726|Q13263-2|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF	ENSG00000130726|ENST00000253024|TRIM28	ENSG00000130726|ENST00000253024|TRIM28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7696838378906	2	500.28834	998.562127	0.048011	2.4019E-05	-2.087	-0.0010441	-2.039	-0.0010201	500.28785634987224	65.436	0.13363	65.436	65.326	65.46	0					5	3	2	0	0	0	0.024374	1	7736	7736		32.812	0	1	107440			66181	4447	46680	46746	71375	71375					0.06278796768890516
RGRWLPSR	8	Unmodified	_RGRWLPSR_					0	0	0		ENST00000585421.5_1_17:76850910-76850997:-|nuORF	ENST00000585421.5_1_17:76850910-76850997:-|nuORF	ENST00000585421.5_1_17:76850910-76850997:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8150634765625	2	514.299042	1026.58353	-1.0562	-0.00054322	-1.8528	-0.00095291	-2.9091	-0.0014961	514.298205515768	44.626	0.44478	44.626	44.348	44.793	0					24	12	3	0	0	0	0.027866	1	4291	4291		37.159	0	1	177130			66182	17227	46681	46747	71376	71376					0.07130226588242294
RGRWLPSR	8	Unmodified	_RGRWLPSR_					0	0	0		ENST00000585421.5_1_17:76850910-76850997:-|nuORF	ENST00000585421.5_1_17:76850910-76850997:-|nuORF	ENST00000585421.5_1_17:76850910-76850997:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8156127929688	2	514.299042	1026.58353	-0.67146	-0.00034533	-2.0164	-0.001037	-2.6879	-0.0013824	514.2976241933035	44.707	0.55154	44.744	44.443	44.995	0.0369					21	15	2	0	0	0	0.027866	1	4264	4264		55.504	16.698	1	226290			66183	17227	46681	46747	71377	71377					0.07130226588242294
RGRWPGAGP	9	Unmodified	_RGRWPGAGP_					0	0	0			REV__ENST00000566573.5_1_16:68573203-68591098:+|nuORF	REV__ENST00000566573.5_1_16:68573203-68591098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.23541259765625	2	477.256843	952.499132	-0.025638	-1.2236E-05	-0.76892	-0.00036697	-0.79456	-0.00037921	477.2560812324047	45.191	0.47813	45.235	44.966	45.444	0.043877					17	13	2	0	0	0	0.024436	1	4297	4297		38.806	6.8513	1	475400	+		66184	35215	46682	46748	71378	71378					0.02098275771504632
RGRWPGAGP	9	Unmodified	_RGRWPGAGP_					0	0	0			REV__ENST00000566573.5_1_16:68573203-68591098:+|nuORF	REV__ENST00000566573.5_1_16:68573203-68591098:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.256843	952.499132	-0.082806	-3.952E-05	3.6066	0.0017213	3.5238	0.0016818	477.25602065092966	45.493	0.44013	45.241	45.019	45.459	-0.25252	0.0079378	0.0040296	NaN	23.042	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167680	+		66185	35215	46682	46748							0.02098275771504632
RGRWPGAGP	9	Unmodified	_RGRWPGAGP_					0	0	0			REV__ENST00000566573.5_1_16:68573203-68591098:+|nuORF	REV__ENST00000566573.5_1_16:68573203-68591098:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.256843	952.499132	-0.40015	-0.00019098	-1.5659	-0.00074732	-1.966	-0.00093829	477.2560707702775	45.434	0.32649	45.222	45.022	45.349	-0.21109	-0.010356	-0.00090755	NaN	23.042	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100260	+		66186	35215	46682	46748							0.02098275771504632
RGSASVAIA	9	Unmodified	_RGSASVAIA_					0	0	0			REV__ENST00000565886.1_1_19:7981754-7982422:+|nuORF	REV__ENST00000565886.1_1_19:7981754-7982422:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.2384033203125	2	416.237784	830.461016	-0.70007	-0.00029139	2.6163	0.001089	1.9162	0.00079761	416.23873726177936	21.781	1.9755	21.852	21.254	23.229	0.071487					79	41	3	0	0	0	0.85941	2	656	656;666		35.201	3.2459	1	494160	+		66187	35289	46683	46749	71379;71380	71379					0.039003450661653005
RGSCLLDAPL	10	Unmodified	_RGSCLLDAPL_					0	0	0			REV__ENST00000597572.1_1_19:17321325-17322591:+|nuORF	REV__ENST00000597572.1_1_19:17321325-17322591:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3029174804688	2	522.778959	1043.54336	-0.46963	-0.00024551	-2.647	-0.0013838	-3.1167	-0.0016293	522.7771578989217	29.469	0.89396	29.297	28.893	29.787	-0.17258					45	20	3	0	0	0	0.03519	1	1867	1867		22.58	0.61977	1	672660	+		66188	35806	46684	46750	71381	71381					0.023334990828061564
RGSGLISSISI	11	Unmodified	_RGSGLISSISI_					0	0	0		ENSG00000047936|ENST00000368507|ROS1;ROS1|p.L1167*|1|0.31|ENSG00000047936|chr6:117359957-117359957|A/-|frameshift_variant;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0075	1	11239	11239		35.152	0	1	17400000			66189	1112;18045	46685	46751	71382	71382					0.07820799534783873
RGSLLAHSGC	10	Unmodified	_RGSLLAHSGC_					0	0	0		ENST00000263097.8_1_19:1037929-1038361:+|nuORF	ENST00000263097.8_1_19:1037929-1038361:+|nuORF	ENST00000263097.8_1_19:1037929-1038361:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.78961181640625	2	500.753276	999.491998	-0.19635	-9.8324E-05	2.8112	0.0014077	2.6149	0.0013094	501.25526500343096	92.817	0.21598	92.817	92.708	92.924	0					5	4	2	0	0	0	0.03519	1	11792	11792		21.96	1.013	1	12268			66190	11521	46686	46752	71383	71383					-0.007768248912270792
RGSQAPPRSP	10	Unmodified	_RGSQAPPRSP_					0	0	0		ENST00000301732.9_1_16:2379695-2379815:-|nuORF	ENST00000301732.9_1_16:2379695-2379815:-|nuORF	ENST00000301732.9_1_16:2379695-2379815:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2679443359375	2	526.783422	1051.55229	-1.0744	-0.00056598	3.3721	0.0017764	2.2977	0.0012104	526.7850368700871	52.947	0.76851	52.947	52.391	53.16	0					28	19	2	0	0	0	0.03519	1	5723	5723		49.536	0	1	201850			66191	11934	46687	46753	71384	71384					0.028576087635201475
RGSRGSILSA	10	Unmodified	_RGSRGSILSA_					0	0	0		ENST00000601048.5_2_19:48281831-48281972:+|nuORF	ENST00000601048.5_2_19:48281831-48281972:+|nuORF	ENST00000601048.5_2_19:48281831-48281972:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2659912109375	2	502.285797	1002.55704	0.082014	4.1194E-05	2.3594	0.0011851	2.4414	0.0012263	502.28702226650637	81.985	0.55333	81.792	81.505	82.058	-0.19334					22	12	2	0	0	0	0.03519	1	9856	9856		49.442	17.912	1	195670			66192	17508	46688	46754	71385	71385					0.05586492906297735
RGSTIIRSK	9	Unmodified	_RGSTIIRSK_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.279541015625	2	509.311815	1016.60908	-0.60388	-0.00030756	4.4369	0.0022598	3.833	0.0019522	509.3137539170026	35.25	0.42873	35.037	34.725	35.154	-0.21246					13	10	2	0	0	0	0.024397	1	2668	2668		31.53	9.5699	1	56603			66193	3314	46689	46755	71386	71386					0.10143656320042282
RGTEQRSL	8	Unmodified	_RGTEQRSL_					0	0	0			REV__ENST00000327574.4_1_21:45148845-45152249:+|nuORF	REV__ENST00000327574.4_1_21:45148845-45152249:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.76947021484375	2	473.756872	945.499192	-0.19106	-9.0514E-05	-0.1137	-5.3865E-05	-0.30475	-0.00014438	473.75707848584693	29.96	0.29459	29.716	29.525	29.82	-0.24415					8	6	2	0	0	0	0.027866	1	1876	1876		71.296	0	1	69376	+		66194	30418	46690	46756	71387	71387					0.024262309808477767
RGTGGIFEV	9	Unmodified	_RGTGGIFEV_					0	0	0		nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1	nc|ENSG00000101849|O60907-2|TBL1X	nc|ENSG00000101849|O60907-2|TBL1X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.76654052734375	2	468.250892	934.48723	0.14494	6.7867E-05	2.4071	0.0011271	2.552	0.001195	468.2518987025793	36.753	0.39593	36.69	36.47	36.866	-0.063385					15	9	2	0	0	0	0.024436	1	2927	2927		16.473	3.514	1	199790			66195	2353	46691	46757	71388	71388					0.0173661423766589
RGTHGSLPDL	10	Unmodified	_RGTHGSLPDL_					0	0	0			REV__nc|ENSG00000188662|P60008|H1-9P	REV__nc|ENSG00000188662|P60008|H1-9P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2744750976562	2	526.777805	1051.54106	-0.21742	-0.00011453	-2.1456	-0.0011303	-2.3631	-0.0012448	526.7767015018374	34.472	0.59229	34.248	34.07	34.662	-0.22412					22	14	2	0	0	0	0.03519	1	2539	2539		49.536	0	1	799670	+		66196	37041	46692	46758	71389	71389					0.017347866693853575
RGTHKLPRHRP	11	Unmodified	_RGTHKLPRHRP_					0	0	0		nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF	nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2474670410156	3	452.269083	1353.78542	-0.52386	-0.00023693	4.3529	0.0019687	3.829	0.0017318	452.270868847215	33.203	0.49123	33.209	33.043	33.534	0.0066223					18	13	3	0	0	0	0.024742	1	2383	2383		32.034	19.077	1	450850			66197	18046	46693	46759	71390	71390					0.12267710273818011
RGTKRPKPPGG	11	Unmodified	_RGTKRPKPPGG_					0	0	0		ENST00000525144.6_1_11:126870481-126870580:-|nuORF	ENST00000525144.6_1_11:126870481-126870580:-|nuORF	ENST00000525144.6_1_11:126870481-126870580:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.84375	2	575.843813	1149.67307	-2.0743	-0.0011945	0.6137	0.00035339	-1.4606	-0.00084106	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.0292	1	11435	11435		30.318	0	1	5238400			66198	16085	46694	46760	71391	71391					0.10422436476960684
RGTKRPKPPGG	11	Unmodified	_RGTKRPKPPGG_					0	0	0		ENST00000525144.6_1_11:126870481-126870580:-|nuORF	ENST00000525144.6_1_11:126870481-126870580:-|nuORF	ENST00000525144.6_1_11:126870481-126870580:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8432006835938	2	575.843813	1149.67307	-0.10957	-6.3095E-05	-1.3506	-0.00077775	-1.4602	-0.00084085	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0483	1	11347	11347		25.574	1.0549	1	4935500			66199	16085	46694	46760	71392	71392					0.10422436476960684
RGTKRQLAAPL	11	Unmodified	_RGTKRQLAAPL_					0	0	0		ENST00000367519.8_2_6:146056790-146056913:-|nuORF	ENST00000367519.8_2_6:146056790-146056913:-|nuORF	ENST00000367519.8_2_6:146056790-146056913:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.871826171875	2	605.872571	1209.73059	0.020307	1.2303E-05	-0.796	-0.00048227	-0.77569	-0.00046997	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	1.0624	1	12248	12248		21.686	0.8486	1	1147100			66200	12861	46695	46761	71393	71393					0.13411278682542616
RGTLVPRLAD	10	Unmodified	_RGTLVPRLAD_					0	0	0		ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3263549804688	2	549.324922	1096.63529	0.19678	0.0001081	2.9007	0.0015935	3.0975	0.0017016	549.3263905873443	69.086	0.69527	68.843	68.509	69.204	-0.24277					44	16	4	0	0	0	0.72729	2	8003	8003;8016		65.465	6.9922	1	1438600			66201	8696	46696	46762	71394;71395	71394					0.0908392549151813
RGTRQWFP	8	Unmodified	_RGTRQWFP_					0	0	0			REV__ENST00000325327.3_1_19:2430189-2430624:-|nuORF	REV__ENST00000325327.3_1_19:2430189-2430624:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2991943359375	2	524.277775	1046.541	0.18012	9.4431E-05	2.2304	0.0011693	2.4105	0.0012638	524.2788610766087	76.744	0.78584	76.757	76.532	77.317	0.013504					33	18	2	0	0	0	0.027866	1	9379	9379		25.45	1.2474	1	994540	+		66202	30388	46697	46763	71396	71396					0.019588314600468948
RGTRSLFTL	9	Unmodified	_RGTRSLFTL_					0	0	0			REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7951049804688	2	525.806365	1049.59818	-0.35076	-0.00018443	4.2868	0.002254	3.936	0.0020696	525.8089448473746	36.025	0.17133	36.063	35.927	36.098	0.038044					6	4	2	0	0	0	0.024541	1	2760	2760		16.473	0	1	49178	+		66203	36023	46698	46764	71397	71397					0.07536253945772842
RGTSCCTPAR	10	Unmodified	_RGTSCCTPAR_					0	0	0			REV__ENSG00000176723|ENST00000315678|ZNF843	REV__ENSG00000176723|ENST00000315678|ZNF843	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2748413085938	2	526.242218	1050.46988	-0.66518	-0.00035005	-4.0891	-0.0021519	-4.7543	-0.0025019	526.7422770175655	34.407	0.1251	34.231	34.168	34.293	-0.17557					4	2	2	0	0	0	0.03519	1	2513	2513		50.034	15.861	1	27725	+		66204	27041	46699	46765	71398	71398					-0.053333726312985164
RGVAEPDGRP	10	Unmodified	_RGVAEPDGRP_					0	0	0			REV__ENSG00000284188|ENST00000640271|unknown	REV__ENSG00000284188|ENST00000640271|unknown	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7816772460938	2	527.275429	1052.53631	-1.0043	-0.00052954	-1.142	-0.00060212	-2.1463	-0.0011317	527.2721570269189	82.152	1.4219	82.152	81.63	83.051	0					82	33	5	0	0	0	0.66532	1	10229	10229		69.628	10.846	1	6569100	+		66205	29252	46700	46766	71399	71399					0.012139025266151293
RGVFARGRAPG	11	Unmodified	_RGVFARGRAPG_					0	0	0			REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF	REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2877807617188	2	572.328331	1142.64211	-0.22437	-0.00012841	1.0275	0.00058809	0.80316	0.00045967	572.3307007098423	65.469	0.28614	65.227	65.085	65.372	-0.24145					9	6	2	0	0	0	0.024732	1	7465	7465		25.574	0	1	70334	+		66206	32541	46701	46767	71400	71400					0.0764928316273199
RGVFKKKSI	9	Unmodified	_RGVFKKKSI_					0	0	0			REV__ENSG00000205667|ENST00000381130|ARSH	REV__ENSG00000205667|ENST00000381130|ARSH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.842529296875	2	531.842751	1061.67095	-0.88284	-0.00046953	0.01078	5.7334E-06	-0.87206	-0.0004638	531.8427301514997	51.466	1.4974	51.318	50.828	52.326	-0.14735					110	41	5	0	0	0	0.89441	1	5421	5421		32.812	3.6629	1	9916600	+		66207	28685	46702	46768	71401	71401					0.14258007739181267
RGVKELKEA	9	Unmodified	_RGVKELKEA_					0	0	0			REV__ENST00000597636.5_1_19:50168679-50168826:-|nuORF	REV__ENST00000597636.5_1_19:50168679-50168826:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.31689453125	2	515.306198	1028.59784	-0.74483	-0.00038382	1.5971	0.000823	0.85227	0.00043918	515.306972644334	32.438	0.60443	32.438	32.149	32.753	0					32	15	3	0	0	0	0.024495	1	2263	2263		26.693	3.6504	1	458950	+		66208	35808	46703	46769	71402	71402					0.08468834225891442
RGVLLHVM	8	Unmodified	_RGVLLHVM_					0	0	0		ENST00000356609.2_1_1:220088793-220101375:-|nuORF;ENSG00000196660|ENST00000366926|SLC30A10	ENST00000356609.2_1_1:220088793-220101375:-|nuORF	ENST00000356609.2_1_1:220088793-220101375:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7605895996094	2	462.776022	923.537492	-0.32477	-0.00015029	1.8986	0.00087863	1.5738	0.00072833	462.7790035646507	48.847	0.36198	48.665	48.521	48.883	-0.18206					12	9	2	0	0	0	0.027866	1	4846	4846		21.702	0	1	105710			66209	9908	46704	46770	71403	71403					0.07266445361813112
RGVQQDEEE	9	Unmodified	_RGVQQDEEE_					0	0	0			REV__ENST00000490578.1_1_9:35813369-35813745:-|nuORF	REV__ENST00000490578.1_1_9:35813369-35813745:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2823486328125	2	545.243992	1088.47343	0.47276	0.00025777	-0.69328	-0.00037801	-0.22052	-0.00012024	545.2422220739818	51.604	0.22581	51.42	51.298	51.524	-0.18404					7	5	2	0	0	0	0.024541	1	5296	5296		19.104	6.1443	1	56886	+		66210	33704	46705	46771	71404	71404					-0.06726708052087815
RGVQQDEEE	9	Unmodified	_RGVQQDEEE_					0	0	0			REV__ENST00000490578.1_1_9:35813369-35813745:-|nuORF	REV__ENST00000490578.1_1_9:35813369-35813745:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	545.243992	1088.47343	-1.346	-0.0007339	-8.2646	-0.0045062	-9.6106	-0.0052401	545.2390671388865	51.74	0.20071	51.593	51.441	51.642	-0.14735	0.090183	-0.001637	NaN	37.812	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101030	+		66211	33704	46705	46771							-0.06726708052087815
RGVQQDEEE	9	Unmodified	_RGVQQDEEE_					0	0	0			REV__ENST00000490578.1_1_9:35813369-35813745:-|nuORF	REV__ENST00000490578.1_1_9:35813369-35813745:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	545.243992	1088.47343	-1.7229	-0.0009394	-7.957	-0.0043385	-9.6799	-0.0052779	545.2396359381842	51.407	0.23484	51.494	51.375	51.61	0.087006	-0.0079464	-0.0013016	NaN	37.812	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164790	+		66212	33704	46705	46771							-0.06726708052087815
RGVRDVAIL	9	Unmodified	_RGVRDVAIL_					0	0	0		ENST00000429642.1_3_10:1094327-1094705:-|nuORF	ENST00000429642.1_3_10:1094327-1094705:-|nuORF	ENST00000429642.1_3_10:1094327-1094705:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.8082580566406	2	499.808908	997.603263	-1.0124	-0.00050601	0.52983	0.00026482	-0.48257	-0.00024119	499.809154195003	38.16	1.097	37.942	37.681	38.778	-0.21849					84	30	4	0	0	0	0.4752	1	3091	3091		60.972	0.67798	1	12643000			66213	14151	46706	46772	71405	71405					0.10436557808372982
RGWAAPLLL	9	Unmodified	_RGWAAPLLL_					0	0	0		ENSG00000103522|ENST00000337929|IL21R	ENSG00000103522|ENST00000337929|IL21R	ENSG00000103522|ENST00000337929|IL21R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8016357421875	2	498.803094	995.591636	0.55677	0.00027772	-1.8269	-0.00091126	-1.2701	-0.00063354	498.80201120175064	99.681	0.4295	99.546	99.29	99.719	-0.13526					28	9	4	0	0	0	0.78069	1	12355	12355		40.573	1.7665	1	138710			66214	2512	46707	46773	71406	71406					0.09366360785031702
RGWAQHGQT	9	Unmodified	_RGWAQHGQT_					0	0	0			REV__ENST00000524821.5_2_8:145752004-145752448:-|nuORF	REV__ENST00000524821.5_2_8:145752004-145752448:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3168334960938	2	520.754664	1039.49478	-0.57664	-0.00030029	-4.3935	-0.0022879	-4.9701	-0.0025882	520.7526943758164	31.625	0.19903	31.694	31.606	31.805	0.06896					5	4	2	0	0	0	0.024506	1	2072	2072		38.806	17.859	1	26710	+		66215	34400	46708	46774	71407	71407					-0.02339233442035038
RGWGLGLKT	9	Unmodified	_RGWGLGLKT_					0	0	0		ENST00000466796.1_1_1:32682570-32682720:-|nuORF	ENST00000466796.1_1_1:32682570-32682720:-|nuORF	ENST00000466796.1_1_1:32682570-32682720:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7672119140625	2	494.290351	986.566149	0.58819	0.00029074	-0.92775	-0.00045858	-0.33955	-0.00016784	494.2897228624622	41.011	0.57092	40.888	40.584	41.155	-0.12317					34	15	3	0	0	0	0.024354	1	3605	3605		23.042	2.0956	1	396560			66216	14822	46709	46775	71408	71408					0.07232886262602278
RGWLVPIV	8	Unmodified	_RGWLVPIV_					0	0	0			REV__chr1:159011242-159014661|153|13.09|0.27|5.61|+|1|TE_info:AluSz,AluSz_dup5888,Alu,SINE,donor,+,159011100,159011242|None,IFI16|1	REV__chr1:159011242-159014661|153|13.09|0.27|5.61|+|1|TE_info:AluSz,AluSz_dup5888,Alu,SINE,donor,+,159011100,159011242|None,IFI16|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2960510253906	2	470.292362	938.570172	4.0872	0.0019222	2.9832	0.001403	7.0704	0.0033251	470.29387853859765	18.737	1.81	18.8	18.55	20.36	0.063307					78	36	4	0	0	0	1.0574	1	299	299		21.702	6.0661	1	3904300	+		66217	19314	46710	46776	71409	71409					0.09842975756316719
RGWRLPVY	8	Unmodified	_RGWRLPVY_					0	0	0			REV__ENST00000336440.3_1_14:69260917-69261214:-|nuORF	REV__ENST00000336440.3_1_14:69260917-69261214:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3236694335938	2	523.798343	1045.58213	0.2749	0.00014399	-2.31	-0.00121	-2.0351	-0.001066	523.7973309880673	79.384	0.41794	79.233	78.903	79.321	-0.15051					14	9	2	0	0	0	0.027866	1	9465	9465		20.482	0	1	136100	+		66218	30546	46711	46777	71410	71410					0.06116592499483886
RGYEDFALTGM	11	Unmodified	_RGYEDFALTGM_					0	0	0			REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.5294189453125	3	420.529017	1258.56522	3.0996	0.0013035	0.036568	1.5378E-05	3.1362	0.0013188	420.5290145022708	18.492	2.2232	18.249	17.825	20.048	-0.24256					67	44	2	0	0	0	1.0022	1	276	276		36.318	4.7878	1	498590	+		66219	24734	46712	46778	71411	71411					-0.053717409592991316
RGYFAGTE	8	Unmodified	_RGYFAGTE_					0	0	0			REV__ENSG00000282608|ENST00000241356|ADORA3	REV__ENSG00000282608|ENST00000241356|ADORA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.26434326171875	2	450.714142	899.413731	0.31842	0.00014351	-3.8537	-0.0017369	-3.5353	-0.0015934	450.7122967153946	32.658	0.6983	32.465	32.205	32.904	-0.19261					30	16	2	0	0	0	0.027866	1	2325	2325		18.324	0	1	115450	+		66220	29238	46713	46779	71412	71412					-0.03999934204796318
RGYNFEDL	8	Unmodified	_RGYNFEDL_					0	0	0		ENSG00000162923|ENST00000414423|WDR26;ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7566833496094	2	507.237981	1012.46141	-1.7434	-0.00088429	-2.6274	-0.0013327	-4.3708	-0.002217	507.7381406483088	38.344	0.34805	38.371	38.264	38.612	0.027275					11	9	2	0	0	0	0.027866	1	3164	3164		17.365	0	1	45267			66221	7010	46714	46780	71413	71413					-0.04432280004630229
RGYPDSESTW	10	Unmodified	_RGYPDSESTW_					0	0	0		ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	ENSG00000101945|ENST00000376687|SUV39H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	598.8121337890625	2	599.262185	1196.50982	-1.1304	-0.00067738	0.12139	7.2747E-05	-1.009	-0.00060463	599.2620535849138	44.857	0.80833	44.605	44.282	45.091	-0.25252					51	20	3	0	0	0	0.03519	1	4225	4225		17.468	5.957	1	529500			66222	2363	46715	46781	71414	71414					-0.08057831155360873
RGYWKSGNV	9	Unmodified	_RGYWKSGNV_					0	0	0			REV__ENSG00000101004|ENST00000278886|NINL	REV__ENSG00000101004|ENST00000278886|NINL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7741088867188	2	533.775065	1065.53558	-0.53891	-0.00028766	-0.89487	-0.00047766	-1.4338	-0.00076532	533.7745057007689	50.856	1.1847	50.707	50.39	51.575	-0.14916					94	33	4	0	0	0	0.35646	1	5331	5331		68.787	12.353	1	12060000	+		66223	21176	46716	46782	71415	71415					0.005431078775700371
RHARGYGRS	9	Unmodified	_RHARGYGRS_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	530.28138	1058.54821	-0.33104	-0.00017555	1.9727	0.0010461	1.6417	0.00087054	530.2824904478331	39.751	1.0224	39.751	39.076	40.099	0					97	28	5	0	0	0	0.43973	1	3471	3471		63.306	4.5243	1	34885000			66224	1982	46717	46783	71416	71416					0.02127564060469922
RHDAPALC	8	Unmodified	_RHDAPALC_					0	0	0		ENSG00000204498|ENST00000376148|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	ENSG00000204498|ENST00000376148|NFKBIL1	ENSG00000204498|ENST00000376148|NFKBIL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7144470214844	2	441.716162	881.41777	-0.088995	-3.9311E-05	-2.9076	-0.0012843	-2.9966	-0.0013236	441.71451035524495	31.353	2.4158	31.365	29.884	32.299	0.011797					188	58	5	0	0	0	0.96719	1	2048	2048		42.474	0	1	2374600			66225	10349	46718	46784	71417	71417					-0.027681679827537664
RHDCRRYL	8	Carbamidomethyl (C)	_RHDC(Carbamidomethyl (C))RRYL_	RHDC(1)RRYL		RHDC(53)RRYL		0	1	0			REV__ENST00000463015.1_1_1:202977868-202984294:+|nuORF	REV__ENST00000463015.1_1_1:202977868-202984294:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	588.7937622070312	2	588.296173	1174.57779	-0.60981	-0.00035875	-2.4844	-0.0014616	-3.0942	-0.0018203	588.2955159925341	106.25	0.60676	106.25	105.93	106.54	0					34	23	2	0	0	0	0.87148	1	13636	13636		53.351	7.3995	1	87206	+		66226	32921	46719	46785	71418	71418	434				-0.0025123998570961703
RHDCRRYL	8	Carbamidomethyl (C)	_RHDC(Carbamidomethyl (C))RRYL_					0	1	0			REV__ENST00000463015.1_1_1:202977868-202984294:+|nuORF	REV__ENST00000463015.1_1_1:202977868-202984294:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	588.296173	1174.57779	-0.60981	-0.00035875	-2.4844	-0.0014616	-3.0942	-0.0018203	588.2955159925341	106.25	0.60676	106.25	105.93	106.54	0	0.1213	0.0011646	NaN	53.351	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87206	+		66227	32921	46719	46785			434				-0.0025123998570961703
RHDCRRYL	8	Carbamidomethyl (C)	_RHDC(Carbamidomethyl (C))RRYL_					0	1	0			REV__ENST00000463015.1_1_1:202977868-202984294:+|nuORF	REV__ENST00000463015.1_1_1:202977868-202984294:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	588.296173	1174.57779	-0.36098	-0.00021236	-4.1708	-0.0024537	-4.5318	-0.002666	588.2943283703862	106.13	0.46739	106.01	105.64	106.11	-0.1238	-0.1213	-0.00081963	NaN	53.351	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82499	+		66228	32921	46719	46785			434				-0.0025123998570961703
RHDSLARVELV	11	Unmodified	_RHDSLARVELV_					0	0	0			REV__ENST00000312358.11_1_2:220352985-220353325:+|nuORF	REV__ENST00000312358.11_1_2:220352985-220353325:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	648.8698120117188	2	647.864943	1293.71533	0.38775	0.00025121	0.11139	7.2166E-05	0.49914	0.00032337	647.8644567357131	114.65	0.17922	114.66	114.59	114.77	0.0087204					17	7	4	0	0	0	1.0344	1	14124	14124		29.17	3.596	1	1567200	+		66229	30219	46720	46786	71419	71419					0.08022367094713445
RHDSLARVELV	11	Unmodified	_RHDSLARVELV_					0	0	0			REV__ENST00000312358.11_1_2:220352985-220353325:+|nuORF	REV__ENST00000312358.11_1_2:220352985-220353325:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	647.864943	1293.71533	0.38775	0.00025121	0.11139	7.2166E-05	0.49914	0.00032337	647.8644567357131	114.65	0.17922	114.66	114.59	114.77	0.0087204	0	0	NaN	29.17	17	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1567200	+		66230	30219	46720	46786							0.08022367094713445
RHEPLLPL	8	Unmodified	_RHEPLLPL_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7908630371094	2	487.792727	973.5709	-0.96209	-0.0004693	-3.3876	-0.0016524	-4.3497	-0.0021217	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.75307	2	10249	10237;10249		62.978	13.768	1	1891000			66231	1044	46721	46787	71420;71421	71421					0.08305770405377189
RHFKMQRA	8	Unmodified	_RHFKMQRA_					0	0	0			REV__ENST00000601340.5_1_19:50061444-50083809:-|nuORF	REV__ENST00000601340.5_1_19:50061444-50083809:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.31982421875	2	537.292902	1072.57125	0.71797	0.00038576	1.4968	0.00080423	2.2148	0.00119	537.2934041556457	20.145	0.48122	19.948	19.704	20.185	-0.19768					13	9	2	0	0	0	0.027866	1	491	491		35.201	1.6851	1	36238	+		66232	35855	46722	46788	71422	71422					0.03786866853602078
RHFQLLPRSR	10	Unmodified	_RHFQLLPRSR_					0	0	0			REV__ENSG00000125998|ENST00000374408|FAM83C	REV__ENSG00000125998|ENST00000374408|FAM83C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2572021484375	3	437.258184	1308.75272	0.70758	0.0003094	-2.6209	-0.001146	-1.9133	-0.0008366	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.1277	1	12055	12055		25.126	0.058206	1	1350500	+		66233	22871	46723	46789	71423	71423					0.11069503150952187
RHGESAWNL	9	Unmodified	_RHGESAWNL_					0	0	0		ENST00000473929.1_1_10:99186064-99186940:+|nuORF;ENSG00000171314|ENST00000334828|PGAM1	ENST00000473929.1_1_10:99186064-99186940:+|nuORF	ENST00000473929.1_1_10:99186064-99186940:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2608032226562	2	535.262322	1068.51009	-0.38331	-0.00020517	-2.7111	-0.0014512	-3.0944	-0.0016563	535.2609549621018	24.492	1.7442	24.277	23.954	25.698	-0.2151					108	40	5	0	0	0	0.67687	1	1054	1054		47.657	5.2612	1	25489000			66234	8139	46724	46790	71424	71424					-0.021423666448754375
RHGLHVEGL	9	Unmodified	_RHGLHVEGL_					0	0	0			REV__ENST00000303391.10_2_X:153287587-153287707:-|nuORF	REV__ENST00000303391.10_2_X:153287587-153287707:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.28387451171875	2	509.283057	1016.55156	-0.13883	-7.0704E-05	2.6994	0.0013747	2.5605	0.001304	509.2843057709085	69.987	0.98575	69.736	69.196	70.182	-0.25063					73	23	5	0	0	0	0.4752	1	8130	8130		60.972	4.2509	1	2425200	+		66235	30092	46725	46791	71425	71425					0.043948141144596775
RHGMRKMY	8	Unmodified	_RHGMRKMY_					0	0	0			REV__nc|ENSG00000009765|Q6PHW0-7|IYD	REV__nc|ENSG00000009765|Q6PHW0-7|IYD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.775146484375	2	539.773488	1077.53242	0.047393	2.5582E-05	1.9545	0.001055	2.0019	0.0010806	539.7743390431418	77.313	0.84093	77.051	76.644	77.485	-0.26202					43	20	3	0	0	0	0.88442	1	9171	9171		52.299	2.2746	1	1647900	+		66236	19896	46726	46792	71426	71426					-0.0032418177243016544
RHGRGVPGDL	10	Unmodified	_RHGRGVPGDL_					0	0	0			REV__ENST00000478808.2_1_12:109490357-109491595:-|nuORF	REV__ENST00000478808.2_1_12:109490357-109491595:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.29150390625	2	532.291414	1062.56827	-0.60862	-0.00032396	2.0777	0.001106	1.4691	0.00078199	532.2922625886055	66.487	0.7781	66.487	66.348	67.126	0					33	21	2	0	0	0	0.85955	1	7912	7912		56.721	1.2168	1	1256900	+		66237	33378	46727	46793	71427	71427					0.03949315000431852
RHITKGAS	8	Unmodified	_RHITKGAS_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.251708984375	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0574	1	9429	9429		27.882	2.3082	1	2292300	+		66238	26806	46728	46794	71428	71428					0.04839453677379879
RHKHRRLLHLL	11	Unmodified	_RHKHRRLLHLL_					0	0	0			REV__ENST00000451963.1_2_7:99818153-99818871:+|nuORF	REV__ENST00000451963.1_2_7:99818153-99818871:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.75048828125	3	493.647894	1477.92185	-0.17419	-8.5988E-05	3.994	0.0019716	3.8198	0.0018857	493.6498019350321	46.364	0.38458	46.103	45.891	46.276	-0.26118					16	9	2	0	0	0	0.024869	1	4429	4429		14.694	11.482	1	153650	+		66239	28738	46729	46795	71429	71429					0.20200824504354387
RHKRKAIYKSP	11	Unmodified	_RHKRKAIYKSP_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.94830322265625	3	461.949239	1382.82589	-1.2811	-0.00059179	-0.71306	-0.0003294	-1.9941	-0.00092119	461.948787177051	107.18	0.59211	107.05	106.76	107.35	-0.1346					79	23	4	0	0	0	1.0788	1	13322	13322		17.167	2.4731	1	1174300	+		66240	36953	46730	46796	71430	71430					0.14978631873600534
RHLAGEQARL	10	Unmodified	_RHLAGEQARL_					0	0	0			REV__ENST00000452042.1_1_3:49022609-49022810:-|nuORF	REV__ENST00000452042.1_1_3:49022609-49022810:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8236694335938	2	575.825621	1149.63669	-2.0402	-0.0011748	-1.807	-0.0010405	-3.8472	-0.0022153	575.8244688403731	44.186	0.68062	44.186	43.872	44.553	0					64	19	4	0	0	0	1.0719	1	4197	4197		36.447	2.2742	1	5231200	+		66241	32729	46731	46797	71431	71431					0.06785559580271183
RHLAGEQARL	10	Unmodified	_RHLAGEQARL_					0	0	0			REV__ENST00000452042.1_1_3:49022609-49022810:-|nuORF	REV__ENST00000452042.1_1_3:49022609-49022810:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.82373046875	2	575.825621	1149.63669	-0.63771	-0.00036721	-3.0404	-0.0017507	-3.6781	-0.0021179	575.8236828291937	44.859	1.2375	44.896	44.612	45.85	0.036903					77	35	3	0	0	0	0.88896	1	4262	4262		54.776	8.8244	1	2234500	+		66242	32729	46731	46797	71432	71432					0.06785559580271183
RHLKLHRG	8	Unmodified	_RHLKLHRG_					0	0	0		ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.2768249511719	2	508.814859	1015.61517	0.57383	0.00029198	3.3966	0.0017283	3.9705	0.0020202	508.81602725253595	70.664	0.94612	70.664	70.355	71.301	0					29	22	2	0	0	0	0.027866	1	8568	8568		31.955	0	1	294520			66243	8946	46732	46798	71433	71433					0.10798219342223092
RHLKRDQVLRL	11	Unmodified	_RHLKRDQVLRL_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|204|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|204|2|anti-sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|204|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.777587890625	3	478.631909	1432.8739	-0.98044	-0.00046927	-3.5592	-0.0017035	-4.5396	-0.0021728	478.9660827760455	27.104	0.14456	27.185	27.1	27.245	0.081291					5	3	2	0	0	0	0.024801	1	1402	1402		23.378	5.5448	1	43706			66244	17898	46733	46799	71434	71434					0.17477705793635323
RHLLLQQAE	9	Unmodified	_RHLLLQQAE_					0	0	0			REV__SYNE1|p.H1278R|1|0.08|ENSG00000131018|chr6:152444415-152444415|T/C|missense_variant	REV__SYNE1|p.H1278R|1|0.08|ENSG00000131018|chr6:152444415-152444415|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.7841796875	2	554.317097	1106.61964	0.17688	9.8048E-05	-2.2111	-0.0012257	-2.0343	-0.0011276	554.3161072261117	41.355	0.74377	41.355	40.944	41.688	0					33	20	2	0	0	0	0.024405	1	3646	3646		44.117	6.9577	1	113910	+		66245	37666	46734	46800	71435	71435					0.07059638974465088
RHLLYERWARW	11	Unmodified	_RHLLYERWARW_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7737426757812	3	529.288143	1584.8426	-1.2411	-0.00065691	3.5711	0.0018901	2.33	0.0012332	529.2900076201303	32.748	0.94716	32.748	32.149	33.096	0					49	24	3	0	0	0	0.024888	1	2210	2210		6.001	2.9751	1	1092300			66246	4787	46735	46801	71436	71436					0.07357132759534579
RHLLYERWARW	11	Unmodified	_RHLLYERWARW_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	529.288143	1584.8426	-0.87068	-0.00046084	3.3556	0.0017761	2.4849	0.0013152	529.2899934864017	32.606	1.1445	32.617	32.182	33.327	0.011799	-0.017276	0.00033364	NaN	6.001	61	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	957160			66247	4787	46735	46801							0.07357132759534579
RHLLYERWARW	11	Unmodified	_RHLLYERWARW_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	529.288143	1584.8426	-0.14193	-7.5125E-05	2.6471	0.0014011	2.5052	0.001326	529.2896557788039	32.485	0.99039	32.548	32.085	33.076	0.062885	-0.08713	-0.00079133	NaN	6.001	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006900			66248	4787	46735	46801							0.07357132759534579
RHLLYERWARW	11	Unmodified	_RHLLYERWARW_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	529.288143	1584.8426	-0.31938	-0.00016905	2.9249	0.0015481	2.6055	0.0013791	529.2896461972497	32.791	0.48865	32.559	32.263	32.751	-0.23185	-0.076038	-0.0003503	NaN	6.001	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184120			66249	4787	46735	46801							0.07357132759534579
RHLLYERWARW	11	Unmodified	_RHLLYERWARW_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	529.288143	1584.8426	-0.18285	-9.678E-05	3.0227	0.0015999	2.8398	0.0015031	529.2898825787348	32.866	0.44697	32.673	32.457	32.904	-0.19261	0.038219	-0.00019498	NaN	6.001	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164640			66250	4787	46735	46801							0.07357132759534579
RHLLYERWARW	11	Unmodified	_RHLLYERWARW_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	529.288143	1584.8426	-0.35102	-0.00018579	2.8041	0.0014842	2.4531	0.0012984	529.2895472103079	32.83	0.44447	32.664	32.355	32.8	-0.16565	0.029403	-0.00054211	NaN	6.001	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141530			66251	4787	46735	46801							0.07357132759534579
RHLPSQCWRTW	11	Unmodified	_RHLPSQCWRTW_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.57940673828125	3	490.578817	1468.71462	1.7392	0.00085323	-0.4722	-0.00023165	1.267	0.00062157	490.5786192878495	18.865	1.0665	18.865	18.577	19.644	0					69	21	5	0	0	0	0.95911	1	333	333		45.908	12.869	1	703660			66252	18234	46736	46802	71437	71437					-0.0009875082600956375
RHLPSQCWRTW	11	Unmodified	_RHLPSQCWRTW_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.5795593261719	3	490.578817	1468.71462	0.87837	0.00043091	0.33741	0.00016553	1.2158	0.00059644	490.57906155486745	19.478	1.1293	19.278	18.859	19.988	-0.2001					78	22	6	0	0	0	1.0123	1	417	417		34.087	3.5176	1	1767300			66253	18234	46736	46802	71438	71438					-0.0009875082600956375
RHLPSQCWRTW	11	Unmodified	_RHLPSQCWRTW_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.57958984375	3	490.578817	1468.71462	1.7438	0.00085547	-0.5243	-0.00025721	1.2195	0.00059826	490.5786258470849	19.444	1.1338	19.211	18.829	19.963	-0.23345					69	22	5	0	0	0	1.017	1	405	405		33.039	2.9003	1	1695300			66254	18234	46736	46802	71439	71439					-0.0009875082600956375
RHLQGRIQ	8	Unmodified	_RHLQGRIQ_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.29693603515625	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	1.0239	1	348	348		33.516	6.7195	1	5749100	+	+	66255	19589	46737	46803	71440	71440					0.0754192272564751
RHLQLAVRN	9	Unmodified	_RHLQLAVRN_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.830706	1105.64686	-0.33256	-0.00018418	-1.0785	-0.00059729	-1.411	-0.00078147	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.98128	1	10882	10882		24.203	2.2429	1	6921700			66256	9323	46738	46804	71441	71441					0.09826167305504896
RHLVTRII	8	Unmodified	_RHLVTRII_					0	0	0			REV__ENST00000496699.1_1_1:117509714-117517097:+|nuORF	REV__ENST00000496699.1_1_1:117509714-117517097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.3270263671875	2	504.327268	1006.63998	0.23021	0.0001161	-0.72506	-0.00036567	-0.49486	-0.00024957	504.32693863208095	17.918	1.0817	17.775	17.552	18.634	-0.14278					58	21	5	0	0	0	0.845	1	206	206		55.504	5.4797	1	3132500	+		66257	33832	46739	46805	71442	71442					0.13692854424925827
RHMRVHSGE	9	Unmodified	_RHMRVHSGE_					0	0	0		nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64	nc|ENSG00000020256|Q9NTW7-6|ZFP64	nc|ENSG00000020256|Q9NTW7-6|ZFP64	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7750244140625	2	554.775074	1107.53559	-0.58012	-0.00032184	0.0048625	2.6976E-06	-0.57526	-0.00031914	554.7750525630994	57.771	0.69841	57.593	57.096	57.795	-0.17775					52	17	4	0	0	0	0.55828	1	6344	6344		55.504	0.72789	1	5244400			66258	955	46740	46806	71443	71443					-0.013872153940837961
RHPLQSAD	8	Unmodified	_RHPLQSAD_					0	0	0			REV__ENSG00000139656|ENST00000400419|SMIM2	REV__ENSG00000139656|ENST00000400419|SMIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.7643127441406	2	462.238316	922.462078	-0.2779	-0.00012845	-0.10397	-4.8059E-05	-0.38187	-0.00017651	462.23814191840086	22.114	0.52564	22.039	21.698	22.223	-0.075296					15	10	2	0	0	0	0.027866	1	694	694		45.952	1.8352	1	54102	+		66259	23957	46741	46807	71444	71444					-0.002254405649068758
RHPLQSAD	8	Unmodified	_RHPLQSAD_					0	0	0			REV__ENSG00000139656|ENST00000400419|SMIM2	REV__ENSG00000139656|ENST00000400419|SMIM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	462.238316	922.462078	-0.47462	-0.00021939	0.44522	0.0002058	-0.029395	-1.3587E-05	462.2384043604334	22.054	0.42512	22.054	21.819	22.245	0	0.014117	-1.712E-05	NaN	45.952	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44632	+		66260	23957	46741	46807							-0.002254405649068758
RHPLQSAD	8	Unmodified	_RHPLQSAD_					0	0	0			REV__ENSG00000139656|ENST00000400419|SMIM2	REV__ENSG00000139656|ENST00000400419|SMIM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.238316	922.462078	-0.48012	-0.00022193	0.66672	0.00030818	0.1866	8.6253E-05	462.23859993463884	21.955	0.53369	22.026	21.781	22.314	0.071487	-0.013184	0.00018765	NaN	45.952	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44348	+		66261	23957	46741	46807							-0.002254405649068758
RHQLVHTVE	9	Unmodified	_RHQLVHTVE_					0	0	0		YY2|p.G307V|1|0.51|ENSG00000230797|chrX:21857404-21857404|G/T|missense_variant	YY2|p.G307V|1|0.51|ENSG00000230797|chrX:21857404-21857404|G/T|missense_variant	YY2|p.G307V|1|0.51|ENSG00000230797|chrX:21857404-21857404|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.2716674804688	2	559.806897	1117.59924	0.11966	6.6984E-05	2.1823	0.0012216	2.3019	0.0012886	559.8087443903986	93.437	0.56564	93.315	93.06	93.625	-0.12215					17	12	2	0	0	0	0.024021	1	11496	11496		49.442	0	1	110850			66262	38168	46742	46808	71445	71445					0.04514468314664555
RHQSDGHY	8	Unmodified	_RHQSDGHY_					0	0	0			REV__ENSG00000140519|ENST00000268122|RHCG	REV__ENSG00000140519|ENST00000268122|RHCG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7404479980469	2	500.223197	998.431841	-0.29894	-0.00014954	-0.016415	-8.2111E-06	-0.31535	-0.00015775	500.72391566456196	41.226	0.19695	40.999	40.847	41.044	-0.2278					6	4	2	0	0	0	0.027866	1	3601	3601		47.916	21.119	1	26064	+		66263	24024	46743	46809	71446	71446					-0.06743799230093828
RHRGGRRG	8	Unmodified	_RHRGGRRG_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2773132324219	2	476.276432	950.538312	1.9285	0.00091851	0.95591	0.00045528	2.8844	0.0013738	476.27674107313857	19.217	0.6432	18.984	18.731	19.374	-0.23345					26	12	4	0	0	0	1.0239	1	378	378		33.516	6.7195	1	255590			66264	18178	46744	46810	71447	71447					0.06106420845765115
RHRRRRWQLLD	11	Unmodified	_RHRRRRWQLLD_					0	0	0			REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	REV__ENST00000589935.1_1_18:54318575-54318788:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8077392578125	3	531.309941	1590.90799	-0.99902	-0.00053079	-1.0457	-0.00055559	-2.0447	-0.0010864	531.3093953128165	47.819	0.31522	47.819	47.591	47.906	0					13	9	2	0	0	0	0.024888	1	4795	4795		6.001	2.9751	1	160180	+		66265	35686	46745	46811	71448	71448					0.13617547005264896
RHSENDEPL	9	Unmodified	_RHSENDEPL_					0	0	0			REV__ENST00000330287.10_1_X:154065779-154088866:-|nuORF	REV__ENST00000330287.10_1_X:154065779-154088866:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.3350219726562	2	548.754527	1095.4945	-0.96993	-0.00053225	-1.4015	-0.00076907	-2.3714	-0.0013013	548.7568181016907	43.19	0.94325	43.19	42.967	43.91	0					53	25	4	0	0	0	0.024313	1	4088	4088		69.628	8.6557	1	472340	+		66266	30454	46746	46812	71449	71449					-0.0494269795258333
RHSKAPIGG	9	Unmodified	_RHSKAPIGG_					0	0	0			REV__nc|ENSG00000107242|O14986-3|PIP5K1B	REV__nc|ENSG00000107242|O14986-3|PIP5K1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7643127441406	2	461.764501	921.514448	-0.29537	-0.00013639	0.4643	0.0002144	0.16893	7.8006E-05	461.7645652630605	21.796	1.24	21.706	21.109	22.349	-0.090092					47	25	3	0	0	0	0.83071	1	694	694		37.159	2.9866	1	655960	+		66267	21659	46747	46813	71450	71450					0.05055142568721749
RHTCKHKQT	9	Unmodified	_RHTCKHKQT_					0	0	0		nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ	nc|ENSG00000198265|P42694-2|HELZ	nc|ENSG00000198265|P42694-2|HELZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.3455200195312	2	569.798549	1137.58254	-1.1728	-0.00066828	-4.2628	-0.002429	-5.4357	-0.0030972	569.7963820341122	36.159	0.82569	36.197	35.652	36.478	0.038044					27	22	2	0	0	0	0.024283	1	2700	2700		65.465	41.943	1	93770			66268	10115	46748	46814	71451	71451					0.019256441570632887
RHTCKHKQT	9	Unmodified	_RHTCKHKQT_					0	0	0		nc|ENSG00000198265|P42694-2|HELZ;ENSG00000198265|ENST00000358691|HELZ	nc|ENSG00000198265|P42694-2|HELZ	nc|ENSG00000198265|P42694-2|HELZ	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.798549	1137.58254	-1.2334	-0.00070279	-3.5566	-0.0020266	-4.79	-0.0027294	569.7966595640839	35.965	0.23576	35.923	35.797	36.032	-0.042454	-0.13693	0.00045279	NaN	65.465	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79729			66269	10115	46748	46814							0.019256441570632887
RHTGKKHLQW	10	Unmodified	_RHTGKKHLQW_					0	0	0		ZNF208|p.C175W|1|0.16|ENSG00000160321|chr19:21974509-21974509|A/C|missense_variant	ZNF208|p.C175W|1|0.16|ENSG00000160321|chr19:21974509-21974509|A/C|missense_variant	ZNF208|p.C175W|1|0.16|ENSG00000160321|chr19:21974509-21974509|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	644.8641357421875	2	645.862538	1289.71052	-2.1679	-0.0014001	-3.199	-0.0020661	-5.3669	-0.0034663	645.8611130339045	110.7	0.32959	110.58	110.51	110.84	-0.12525					16	10	2	0	0	0	0.03519	1	13599	13599		19.997	0.89325	1	255410			66270	38181	46749	46815	71452	71452					0.07725527742604754
RHVRHGFWPP	10	Unmodified	_RHVRHGFWPP_					0	0	0			REV__ENST00000540651.5_1_1:228285710-228285842:+|nuORF	REV__ENST00000540651.5_1_1:228285710-228285842:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.24853515625	3	430.231857	1287.67374	-0.053307	-2.2934E-05	-3.4917	-0.0015022	-3.545	-0.0015252	430.2303518009971	37.415	0.76772	37.206	36.923	37.691	-0.2092					40	19	4	0	0	0	0.03519	1	3037	3037		36.447	12.215	1	299170	+		66271	34752	46750	46816	71453	71453					0.04141275916708764
RHVRHGFWPP	10	Unmodified	_RHVRHGFWPP_					0	0	0			REV__ENST00000540651.5_1_1:228285710-228285842:+|nuORF	REV__ENST00000540651.5_1_1:228285710-228285842:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	430.231857	1287.67374	0.46093	0.00019831	-4.5075	-0.0019393	-4.0466	-0.001741	430.22985449228565	37.423	0.58075	37.23	36.927	37.508	-0.193	0.01465	-0.0015146	NaN	36.447	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342360	+		66272	34752	46750	46816							0.04141275916708764
RHVRHGFWPP	10	Unmodified	_RHVRHGFWPP_					0	0	0			REV__ENST00000540651.5_1_1:228285710-228285842:+|nuORF	REV__ENST00000540651.5_1_1:228285710-228285842:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	430.231857	1287.67374	-0.7631	-0.00032831	-2.9117	-0.0012527	-3.6748	-0.001581	430.2305010776235	37.43	0.50563	37.21	36.885	37.39	-0.2195	-0.0052193	0.00054511	NaN	36.447	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385440	+		66273	34752	46750	46816							0.04141275916708764
RHVSAIPWG	9	Unmodified	_RHVSAIPWG_					0	0	0		nc|ENSG00000165672|P30048-2|PRDX3;ENSG00000165672|ENST00000298510|PRDX3	nc|ENSG00000165672|P30048-2|PRDX3	nc|ENSG00000165672|P30048-2|PRDX3	MSMS	OPSCC_40_ClassI_Rep-2	5	511.77923583984375	2	511.780151	1021.54575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.973	1	16.766	16.266	17.266	-0.20777								0	0	0	0.65896	1	119	119		29.15	0.89528	1				66274	7450	46751	46817	71454	71454					0.0358371560280375
RHWLKVKKDYL	11	Unmodified	_RHWLKVKKDYL_					0	0	0		nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;LIG3|p.Q990Rfs*18|1|0.19|ENSG00000005156|chr17:35004442-35004443|-/GC|frameshift_variant;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33325156-33325826:+|nuORF	nc|ENSG00000005156|P49916-4|LIG3	nc|ENSG00000005156|P49916-4|LIG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.958984375	3	495.961144	1484.8616	0.1597	7.9203E-05	-4.3271	-0.0021461	-4.1674	-0.0020669	495.95869291912163	102.24	1.8619	102.11	101.46	103.32	-0.12931					117	44	4	0	0	0	1.1045	1	12763	12763		10.104	0.45776	1	658600			66275	760	46752	46818	71455	71455					0.13856669330607474
RHWRMLELTRH	11	Unmodified	_RHWRMLELTRH_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2784423828125	3	512.277249	1533.80992	1.5002	0.0007685	0.99167	0.00050801	2.4918	0.0012765	512.2778839402838	16.834	0.57316	16.68	16.485	17.058	-0.15376					19	11	3	0	0	0	1.1062	1	113	113		9.6461	0.43434	1	101520	+		66276	24386	46753	46819	71456	71456					0.06436602365056387
RHWRMLELTRH	11	Unmodified	_RHWRMLELTRH_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2782592773438	3	512.277249	1533.80992	-0.28587	-0.00014644	3.0667	0.001571	2.7808	0.0014245	512.2788635557533	16.802	0.71724	16.594	16.447	17.165	-0.20777					18	14	2	0	0	0	1.1077	1	107	107		9.2118	2.8909	1	94278	+		66277	24386	46753	46819	71457	71457					0.06436602365056387
RHYRLCFE	8	Unmodified	_RHYRLCFE_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;ENST00000465645.1_1_1:28564263-28564305:+|nuORF	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7515258789062	2	562.276918	1122.53928	-0.4483	-0.00025207	-3.7226	-0.0020931	-4.1709	-0.0023452	562.2746719518557	29.061	0.77951	28.889	28.334	29.113	-0.17258					28	17	2	0	0	0	0.027866	1	1747	1747		45.952	21.433	1	81170			66278	18268	46754	46820	71458	71458					-0.01708545620226687
RIAAATLMPD	10	Unmodified	_RIAAATLMPD_					0	0	0			REV__ENSG00000172139|ENST00000305815|SLC9C1	REV__ENSG00000172139|ENST00000305815|SLC9C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8058471679688	2	529.786784	1057.55902	-0.094077	-4.9841E-05	0.58664	0.00031079	0.49256	0.00026095	529.7866844198832	53.788	0.4104	53.883	53.664	54.075	0.095669					15	11	2	0	0	0	0.03519	1	5800	5800		45.972	13.16	1	266380	+		66279	26636	46755	46821	71459	71459					0.03253785599895309
RIADCCLFL	9	Carbamidomethyl (C)	_RIADC(Carbamidomethyl (C))CLFL_	RIADC(0.891)C(0.109)LFL		RIADC(9.1)C(-9.1)LFL		0	1	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|378|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|378|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|378|3|anti-sense	MSMS	OPSCC_40_ClassI_Rep-2	5	555.7747802734375	2	555.775362	1109.53617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.73	1	98.606	98.106	99.106	-0.12413								0	0	0	0.53756	1	12241	12241		47.916	9.1095	2				66280	17885	46756	46822	71460	71460	236				-0.014215567892733816
RIADSFQVI	9	Unmodified	_RIADSFQVI_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7919921875	2	524.792924	1047.57129	-0.56853	-0.00029836	-0.40978	-0.00021505	-0.9783	-0.00051341	524.7927312780023	61.166	1.1639	61.166	60.845	62.009	0					96	30	5	0	0	0	0.28753	1	7076	7076		77.318	8.5308	1	7369500			66281	18787	46757	46823	71461	71461					0.049411453345555856
RIADSFQVI	9	Unmodified	_RIADSFQVI_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7918701171875	2	524.792924	1047.57129	0.070702	3.7104E-05	-0.92922	-0.00048765	-0.85851	-0.00045054	524.7924284079555	61.145	1.1899	61.216	60.871	62.061	0.071129					96	31	5	0	0	0	0.37611	1	6981	6981		67.494	0	1	7743900			66282	18787	46757	46823	71462	71462					0.049411453345555856
RIAEFTTNL	9	Unmodified	_RIAEFTTNL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.789794921875	2	532.790381	1063.56621	-0.69075	-0.00036803	0.77606	0.00041348	0.085313	4.5454E-05	532.7911414366629	56.124	0.96169	56.124	55.61	56.571	0					77	26	5	0	0	0	0.065	3	6250	6226;6237;6250		123.21	32.838	1	7092500			66283	2185	46758	46824	71463;71464;71465	71465					0.036968414719467546
RIAEFTTNL	9	Unmodified	_RIAEFTTNL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7901611328125	2	532.790381	1063.56621	-0.7643	-0.00040721	0.34854	0.0001857	-0.41576	-0.00022152	532.7907335636522	56.244	0.76292	56.088	55.852	56.614	-0.15601					57	20	4	0	0	0	0.038547	4	6238	6213;6225;6238;6251		134.77	38.232	1	7566100			66284	2185	46758	46824	71466;71467;71468;71469	71468					0.036968414719467546
RIAEFTTNL	9	Unmodified	_RIAEFTTNL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.790381	1063.56621	-0.32935	-0.00017547	-3.0725	-0.001637	-3.4018	-0.0018125	532.787813655083	56.194	0.67382	55.978	55.562	56.236	-0.21607	-0.077522	-0.0035502	NaN	134.77	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220780			66285	2185	46758	46824							0.036968414719467546
RIAEFTTNL	9	Unmodified	_RIAEFTTNL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	532.790381	1063.56621	-0.91561	-0.00048783	-1.2262	-0.0006533	-2.1418	-0.0011411	533.2914128885956	56.248	0.49812	56.033	55.78	56.278	-0.21551	-0.022762	-0.0015828	NaN	134.77	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312710			66286	2185	46758	46824							0.036968414719467546
RIAGRGLVG	9	Unmodified	_RIAGRGLVG_					0	0	0			REV__ENST00000469080.5_1_X:47104878-47106896:+|nuORF	REV__ENST00000469080.5_1_X:47104878-47106896:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.78277587890625	2	449.782693	897.550834	2.9379	0.0013214	-2.8681	-0.00129	0.069822	3.1405E-05	449.7812194020037	18.307	0.58764	18.307	18.038	18.626	0					23	11	4	0	0	0	0.97516	1	273	273		25.45	2.4077	1	212720	+		66287	33120	46759	46825	71470	71470					0.09796019465420613
RIAIDNTHF	9	Unmodified	_RIAIDNTHF_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.82666015625	2	543.788173	1085.56179	-0.72653	-0.00039508	-3.7003	-0.0020122	-4.4268	-0.0024073	543.7826215510748	53.337	0.94086	53.337	52.75	53.691	0					54	25	3	0	0	0	0.024436	1	5793	5793		38.806	5.9937	1	1580000	+		66288	19300	46760	46826	71471	71471					0.02243377049035189
RIAIDNTHF	9	Unmodified	_RIAIDNTHF_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.788173	1085.56179	-1.2549	-0.00068241	-9.5234	-0.0051787	-10.778	-0.0058611	543.7828924485783	53.241	0.84811	53.094	52.645	53.493	-0.14723	-0.13736	-0.00043953	NaN	30.504	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154500	+		66289	19300	46760	46826							0.02243377049035189
RIAIDNTHF	9	Unmodified	_RIAIDNTHF_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.788173	1085.56179	-1.0358	-0.00056327	-4.0079	-0.0021794	-5.0437	-0.0027427	543.7826859195195	53.166	0.91475	53.262	52.641	53.556	0.095669	0.030926	0.0055591	NaN	30.504	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1292000	+		66290	19300	46760	46826							0.02243377049035189
RIAMATSCGAL	11	Unmodified	_RIAMATSCGAL_					0	0	0			REV__ENST00000304430.9_1_4:123838831-123843758:-|nuORF	REV__ENST00000304430.9_1_4:123838831-123843758:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.2779541015625	2	547.278269	1092.54198	-1.2559	-0.0006873	-2.0732	-0.0011346	-3.329	-0.0018219	547.2771449491971	30.547	4.1876	30.621	29.523	33.711	0.074314					244	105	4	0	0	0	0.94988	1	1961	1961		47.96	3.8427	1	4201100	+		66291	30103	46761	46827	71472	71472					-0.0005845827759003441
RIASHDFDP	9	Unmodified	_RIASHDFDP_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ENST00000530388.1_1_11:120278459-120278594:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.25830078125	2	529.256705	1056.49886	0.15195	8.0423E-05	2.9329	0.0015523	3.0849	0.0016327	529.2581132411847	17.089	0.51363	16.946	16.812	17.325	-0.14278					19	12	3	0	0	0	0.90698	1	127	127		31.955	1.4512	1	48091			66292	9932	46762	46828	71473	71473					-0.027131887389941767
RIATETLKV	9	Unmodified	_RIATETLKV_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.7952270507812	2	515.816399	1029.61824	0.0055346	2.8548E-06	1.7833	0.00091984	1.7888	0.0009227	516.3193205860305	24.048	0.65968	23.833	23.384	24.044	-0.2151					30	14	3	0	0	0	0.024466	1	1024	1024		31.53	4.8369	1	81343	+		66293	22434	46763	46829	71474	71474					0.10462004885698661
RIATLLQQV	9	Unmodified	_RIATLLQQV_					0	0	0		ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.3238525390625	2	521.324391	1040.63423	-0.073633	-3.8387E-05	-0.22644	-0.00011805	-0.30007	-0.00015644	521.3242729031222	58.477	0.91748	58.477	58.228	59.145	0					58	24	4	0	0	0	0.087669	1	6641	6641		114.89	26.718	1	3142500			66294	9257	46764	46830	71475	71475					0.11553711122587629
RIATLLQQV	9	Unmodified	_RIATLLQQV_					0	0	0		ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.3240356445312	2	521.324391	1040.63423	0.16781	8.7485E-05	-0.47097	-0.00024553	-0.30315	-0.00015804	521.3241367105852	58.45	0.88095	58.541	58.224	59.105	0.091217					55	23	4	0	0	0	0.094442	1	6545	6545		112.41	27.25	1	2711100			66295	9257	46764	46830	71476	71476					0.11553711122587629
RIATLLQQV	9	Unmodified	_RIATLLQQV_					0	0	0		ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.324391	1040.63423	0.50818	0.00026492	-0.76143	-0.00039695	-0.25325	-0.00013202	521.3239861425745	58.769	0.94691	58.582	58.275	59.222	-0.18705	0.048273	-0.00031612	NaN	114.89	60	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2547700			66296	9257	46764	46830							0.11553711122587629
RIATTIITI	9	Unmodified	_RIATTIITI_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1;ENST00000462770.5_1_3:133661447-133748739:-|nuORF	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.3212890625	2	501.321317	1000.62808	-0.016251	-8.1471E-06	-0.18114	-9.081E-05	-0.19739	-9.8957E-05	501.32110016440777	63.535	1.4564	63.283	63.048	64.505	-0.25141					112	39	4	0	0	0	0.31037	1	7410	7410		74.255	4.6274	1	6967100			66297	8488	46765	46831	71477	71477					0.1277919289109377
RIATTIITI	9	Unmodified	_RIATTIITI_					0	0	0		ENSG00000174640|ENST00000310926|SLCO2A1;ENST00000462770.5_1_3:133661447-133748739:-|nuORF	ENSG00000174640|ENST00000310926|SLCO2A1	ENSG00000174640|ENST00000310926|SLCO2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.3205261230469	2	501.321317	1000.62808	1.4789	0.00074142	-1.8366	-0.00092075	-0.3577	-0.00017932	501.32030039212464	63.302	1.4414	63.356	63.054	64.495	0.054104					103	38	4	0	0	0	0.23085	1	7320	7320		84.916	0	1	7635000			66298	8488	46765	46831	71478	71478					0.1277919289109377
RICPLVTL	8	Carbamidomethyl (C)	_RIC(Carbamidomethyl (C))PLVTL_	RIC(1)PLVTL		RIC(89)PLVTL		0	1	0			REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2883605957031	2	486.288963	970.563372	0.38919	0.00018926	-1.1207	-0.000545	-0.73154	-0.00035574	486.2884728224266	58.662	0.83891	58.662	58.418	59.257	0					41	22	2	0	0	0	0.46709	1	6638	6638		88.643	14.668	1	23056000	+		66299	33589	46766	46832	71479	71479	441				0.07691294813457716
RICPLVTL	8	Carbamidomethyl (C)	_RIC(Carbamidomethyl (C))PLVTL_	RIC(1)PLVTL		RIC(68)PLVTL		0	1	0			REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.28887939453125	2	486.288963	970.563372	1.0985	0.00053418	-1.7108	-0.00083194	-0.6123	-0.00029775	486.28809939816097	58.927	0.79364	58.74	58.5	59.294	-0.18705					67	21	5	0	0	0	0.68535	1	6658	6658		68.485	9.7027	1	24491000	+		66300	33589	46766	46832	71480	71480	441				0.07691294813457716
RICPLVTL	8	Carbamidomethyl (C)	_RIC(Carbamidomethyl (C))PLVTL_	RIC(1)PLVTL		RIC(89)PLVTL		0	1	0			REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.28863525390625	2	486.288963	970.563372	0.038466	1.8706E-05	-0.7859	-0.00038217	-0.74743	-0.00036347	486.28863398685365	58.563	0.83969	58.654	58.371	59.211	0.091217					39	22	2	0	0	0	0.46709	2	6554	6542;6554		88.643	9.7027	1	18825000	+		66301	33589	46766	46832	71481;71482	71482	441				0.07691294813457716
RIDARRSF	8	Unmodified	_RIDARRSF_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.764404296875	2	510.788507	1019.56246	-0.0021048	-1.0751E-06	1.9104	0.00097582	1.9083	0.00097475	510.7876127991015	25.537	0.33046	25.617	25.418	25.749	0.08009					11	7	2	0	0	0	0.027866	1	1174	1174		58.782	2.3482	1	24811	+		66302	20413	46767	46833	71483	71483					0.05346216488760547
RIDGKTYVI	9	Unmodified	_RIDGKTYVI_					0	0	0		ENSG00000055332|ENST00000233057|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	ENSG00000055332|ENST00000233057|EIF2AK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8088989257812	2	532.808574	1063.60259	0.12558	6.6912E-05	-0.13248	-7.0588E-05	-0.0068989	-3.6758E-06	532.8083647829944	41.022	0.77711	40.898	40.618	41.396	-0.12317					56	21	4	0	0	0	0.42604	1	3645	3645		64.207	19.83	1	2126700			66303	1187	46768	46834	71484	71484					0.07333718368658992
RIDLLLRA	8	Unmodified	_RIDLLLRA_					0	0	0			REV__nc|ENSG00000196263|Q9BX82-2|ZNF471	REV__nc|ENSG00000196263|Q9BX82-2|ZNF471	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.3133850097656	2	485.313826	968.613099	-1.2198	-0.00059197	0.8735	0.00042392	-0.34625	-0.00016804	485.3140683169259	44.29	1.4688	44.146	43.848	45.316	-0.14471					114	42	5	0	0	0	0.50239	1	4214	4214		85.359	3.0545	1	40669000	+		66304	37050	46769	46835	71485	71485					0.12753745813768091
RIDSLSEQI	9	Unmodified	_RIDSLSEQI_					0	0	0		ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7855224609375	2	530.785296	1059.55604	-0.67234	-0.00035687	0.21265	0.00011287	-0.45969	-0.000244	530.7853938673493	53.076	0.52596	52.929	52.607	53.132	-0.14723					25	13	2	0	0	0	0.17845	2	5680	5680;5704		93.143	0	1	5410800			66305	8318	46770	46836	71486;71487	71486					0.028642337467317702
RIDSLSEQI	9	Unmodified	_RIDSLSEQI_					0	0	0		ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7853393554688	2	530.785296	1059.55604	-0.14922	-7.9202E-05	0.281	0.00014915	0.13178	6.9947E-05	530.7853499026376	52.841	0.89944	52.934	52.364	53.263	0.09314					58	23	4	0	0	0	0.015752	1	5599	5599		158.07	0	1	6498300			66306	8318	46770	46836	71488	71488					0.028642337467317702
RIEKEKWHRLE	11	Unmodified	_RIEKEKWHRLE_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3050842285156	3	508.619558	1522.83684	0.35661	0.00018138	-3.0391	-0.0015457	-2.6825	-0.0013644	508.95245435370714	22.403	0.41488	22.214	21.959	22.374	-0.18894					13	8	2	0	0	0	0.024856	1	770	770		18.531	0.69791	1	66285			66307	3677	46771	46837	71489	71489					0.09633989457188363
RIEKEKWHRLE	11	Unmodified	_RIEKEKWHRLE_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	508.619558	1522.83684	-0.71354	-0.00036292	-1.8867	-0.00095963	-2.6003	-0.0013226	508.61868887309066	22.605	0.36436	22.42	22.236	22.6	-0.18539	0.089066	0.0013181	NaN	18.531	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53162			66308	3677	46771	46837							0.09633989457188363
RIEKEKWHRLE	11	Unmodified	_RIEKEKWHRLE_					0	0	0		ENST00000557684.5_1_12:25267803-25348012:-|nuORF;nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	508.619558	1522.83684	0.30777	0.00015654	-3.4114	-0.0017351	-3.1036	-0.0015786	508.6179089556368	22.56	0.3692	22.358	22.146	22.515	-0.20199	0.027636	-0.0010084	NaN	18.531	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28813			66309	3677	46771	46837							0.09633989457188363
RIEKETIR	8	Unmodified	_RIEKETIR_					0	0	0			REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.8126220703125	2	522.811648	1043.60874	0.049687	2.5977E-05	-0.265	-0.00013854	-0.21531	-0.00011257	522.8113913281753	23.005	0.51429	22.803	22.593	23.107	-0.20193					18	10	2	0	0	0	0.98759	1	878	878		39.253	5.0803	1	194660	+		66310	24976	46772	46838	71490	71490					0.08868236600164892
RIELMNAQ	8	Unmodified	_RIELMNAQ_					0	0	0		ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.27008056640625	2	487.758027	973.5015	1.3268	0.00064715	2.8236	0.0013772	4.1504	0.0020244	487.7591584556339	22.919	0.73003	22.727	22.479	23.209	-0.19117					24	15	3	0	0	0	0.027866	1	846	846		65.803	21.686	1	82997			66311	5250	46773	46839	71491	71491					0.01368943394300004
RIFGESIMI	9	Oxidation (M)	_RIFGESIM(Oxidation (M))I_		RIFGESIM(1)I		RIFGESIM(90)I	0	0	1		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.2886962890625	2	541.289159	1080.56377	-1.5261	-0.00082605	1.3028	0.00070521	-0.22326	-0.00012085	541.2898727810455	64.865	1.1455	64.865	64.384	65.529	0					58	31	2	0	0	0	0.19099	1	7673	7673		90.37	24.567	1	8492700			66312	7023	46774	46840	71492	71492		293			0.026706697426334358
RIFGESIMI	9	Oxidation (M)	_RIFGESIM(Oxidation (M))I_					0	0	1		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	541.289159	1080.56377	-1.8345	-0.000993	1.4216	0.0007695	-0.4129	-0.0002235	541.2899438552963	65.118	1.2367	64.855	64.494	65.73	-0.2626	-0.021005	0.00017252	NaN	90.37	63	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9475300			66313	7023	46774	46840				293			0.026706697426334358
RIFGESIMI	9	Oxidation (M)	_RIFGESIM(Oxidation (M))I_					0	0	1		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	541.289159	1080.56377	-1.2147	-0.00065748	0.95657	0.00051778	-0.25809	-0.0001397	541.2896928882445	64.871	1.2265	64.908	64.555	65.782	0.037384	0.032208	-0.00033093	NaN	90.37	65	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9862700			66314	7023	46774	46840				293			0.026706697426334358
RIFGETIDI	9	Unmodified	_RIFGETIDI_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000555785.2_1_14:20917121-20917425:-|nuORF;ENST00000555656.5_1_14:20917248-20917425:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8107299804688	2	532.292756	1062.57096	-0.60862	-0.00032396	-0.44472	-0.00023672	-1.0533	-0.00056068	532.2922625886055	66.487	0.7781	66.487	66.348	67.126	0					33	21	2	0	0	0	0.024367	1	7920	7920		52.937	12.159	1	1256900			66315	1979	46775	46841	71493	71493					0.04217725614716983
RIFGETIDI	9	Unmodified	_RIFGETIDI_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000555785.2_1_14:20917121-20917425:-|nuORF;ENST00000555656.5_1_14:20917248-20917425:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.8134765625	2	532.292756	1062.57096	-0.60474	-0.0003219	-0.41115	-0.00021885	-1.0159	-0.00054075	532.2922682907445	66.632	0.8653	66.662	66.491	67.356	0.030106					40	20	3	0	0	0	0.0242	1	7849	7849		69.628	14.851	1	2142500			66316	1979	46775	46841	71494	71494					0.04217725614716983
RIFGYPVGI	9	Unmodified	_RIFGYPVGI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2956237792969	2	511.295102	1020.57565	0.34991	0.0001789	-0.037186	-1.9013E-05	0.31272	0.00015989	511.2950775565717	70.302	1.1819	70.302	70.081	71.263	0					63	31	3	0	0	0	0.10076	4	8505	8483;8495;8505;8517		110.34	46.137	1	2275700			66317	4554	46776	46842	71495;71496;71497;71498	71497					0.06618654548140057
RIFGYPVGI	9	Unmodified	_RIFGYPVGI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2950744628906	2	511.295102	1020.57565	0.79041	0.00040413	-0.60397	-0.00030881	0.18644	9.5325E-05	511.29466810498195	70.66	0.86856	70.367	70.163	71.031	-0.29291					55	23	3	0	0	0	0.10076	5	8498	8487;8498;8509;8521;8534		110.34	39.661	1	2184900			66318	4554	46776	46842	71499;71500;71501;71502;71503	71500					0.06618654548140057
RIFGYPVGI	9	Unmodified	_RIFGYPVGI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2937927246094	2	511.295102	1020.57565	-0.35714	-0.0001826	0.48881	0.00024993	0.13167	6.7322E-05	511.295186678925	70.454	0.86314	70.466	70.225	71.088	0.012413					56	21	4	0	0	0	0.10076	6	8421	8412;8421;8428;8432;8444;8456		110.34	49.365	1	2869100			66319	4554	46776	46842	71504;71505;71506;71507;71508;71509	71505					0.06618654548140057
RIFGYPVGI	9	Unmodified	_RIFGYPVGI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.295102	1020.57565	0.14796	7.5652E-05	-0.15005	-7.6722E-05	-0.002094	-1.0707E-06	511.29473556707177	70.197	0.44656	69.982	69.688	70.135	-0.21425	-0.297	-4.4337E-05	NaN	110.34	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177930			66320	4554	46776	46842							0.06618654548140057
RIFQTLLEV	9	Unmodified	_RIFQTLLEV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8319702148438	2	559.832049	1117.64954	-0.1434	-8.0279E-05	-1.1214	-0.00062778	-1.2648	-0.00070805	559.831801937394	72.635	1.7155	72.635	71.869	73.585	0					107	43	4	0	0	0	0.094442	3	8837	8837;8847;8858		112.41	31.608	1	5374400			66321	10915	46777	46843	71510;71511;71512	71510					0.09542577919796713
RIFQTLLEV	9	Unmodified	_RIFQTLLEV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8319091796875	2	559.832049	1117.64954	-0.010983	-6.1487E-06	-0.3907	-0.00021872	-0.40168	-0.00022487	559.8316841092128	73.054	1.1361	72.773	72.465	73.601	-0.28124					95	28	6	0	0	0	0.043667	3	8864	8853;8864;8875		131.03	38.156	1	5476200			66322	10915	46777	46843	71513;71514;71515	71514					0.09542577919796713
RIFQTLLEV	9	Unmodified	_RIFQTLLEV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.8322143554688	2	559.832049	1117.64954	0.12206	6.8333E-05	-0.45258	-0.00025337	-0.33052	-0.00018504	559.8316431324588	72.787	1.1115	72.797	72.529	73.64	0.0096512					78	27	4	0	0	0	0.16638	2	8776	8776;8798		95.815	8.3867	1	5021100			66323	10915	46777	46843	71516;71517	71516					0.09542577919796713
RIFVADDRV	9	Unmodified	_RIFVADDRV_					0	0	0			REV__ENSG00000076604|ENST00000262395|TRAF4	REV__ENSG00000076604|ENST00000262395|TRAF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.8033447265625	2	545.803823	1089.59309	-1.3623	-0.00074355	0.70907	0.00038701	-0.65324	-0.00035654	545.8041091018016	45.14	0.88728	44.991	44.628	45.515	-0.1488					73	25	4	0	0	0	0.42604	1	4355	4355		64.207	4.089	1	5227900	+		66324	20570	46778	46844	71518	71518					0.05187950083131909
RIFYRDRVL	9	Unmodified	_RIFYRDRVL_					0	0	0		ENST00000489376.1_1_19:58267044-58268416:+|nuORF	ENST00000489376.1_1_19:58267044-58268416:+|nuORF	ENST00000489376.1_1_19:58267044-58268416:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8839111328125	3	413.243652	1236.70913	-0.58979	-0.00024373	0.6597	0.00027262	0.069916	2.8892E-05	413.2438369917204	28.122	0.52874	27.877	27.593	28.121	-0.24524					29	12	4	0	0	0	0.024527	1	1608	1608		31.53	23.495	1	249940			66325	15405	46779	46845	71519	71519					0.10023893653828964
RIGHRALVRGD	11	Unmodified	_RIGHRALVRGD_					0	0	0			REV__ENSG00000213892|ENST00000587331|CEACAM16	REV__ENSG00000213892|ENST00000587331|CEACAM16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	625.3673706054688	2	625.365444	1248.71634	0.35861	0.00022426	1.3726	0.00085836	1.7312	0.0010826	625.3659585176757	99.882	0.63972	99.892	99.66	100.3	0.010117					45	16	3	0	0	0	0.96599	1	12741	12741		44.377	0	1	3763400	+		66326	28754	46780	46846	71520	71520					0.10192626254274728
RIGHRALVRGD	11	Unmodified	_RIGHRALVRGD_					0	0	0			REV__ENSG00000213892|ENST00000587331|CEACAM16	REV__ENSG00000213892|ENST00000587331|CEACAM16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	625.3670043945312	2	625.365444	1248.71634	0.067521	4.2225E-05	1.6333	0.0010214	1.7008	0.0010636	625.3662358707653	100.83	0.46889	100.66	100.37	100.84	-0.17178					28	13	3	0	0	0	0.95124	1	12484	12484		47.657	6.2307	1	750910	+		66327	28754	46780	46846	71521	71521					0.10192626254274728
RIGLETTY	8	Unmodified	_RIGLETTY_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197130056-197132285|470|12.64|0.62|4.35|-|0|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.7575378417969	2	476.758549	951.502546	0.38446	0.00018329	-1.6457	-0.00078461	-1.2613	-0.00060132	476.75766316682655	103.71	1.8057	103.54	102.91	104.72	-0.16791					135	46	4	0	0	0	1.0338	1	12892	12892		31.955	0	1	2252400			66328	1335	46781	46847	71522	71522					0.024854810348301726
RIGLMKKFN	9	Unmodified	_RIGLMKKFN_					0	0	0		ENST00000395422.3_1_7:56169496-56170576:-|nuORF	ENST00000395422.3_1_7:56169496-56170576:-|nuORF	ENST00000395422.3_1_7:56169496-56170576:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.828786	1105.64302	-0.79306	-0.00043922	2.9265	0.0016208	2.1334	0.0011816	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	0.90698	1	10898	10898		31.955	0.42505	1	6583300			66329	13519	46782	46848	71523	71523					0.09442361487435846
RIGPMRLT	8	Oxidation (M)	_RIGPM(Oxidation (M))RLT_		RIGPM(1)RLT		RIGPM(61)RLT	0	0	1		nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;ENSG00000113231|ENST00000264917|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2743835449219	2	480.276386	958.53822	0.18589	8.9281E-05	-3.691	-0.0017727	-3.5051	-0.0016834	480.2743848907766	39.398	1.1728	39.172	38.839	40.012	-0.2257					80	30	4	0	0	0	0.77775	1	3331	3331		60.972	7.6205	1	2697900			66330	3271	46783	46849	71524	71524		123			0.05729240010873582
RIGRVPGT	8	Unmodified	_RIGRVPGT_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2611999511719	2	428.261594	854.508634	-0.84173	-0.00036048	1.3058	0.00055924	0.46411	0.00019876	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0574	1	11513	11513		17.365	0	1	86056000	+		66331	37528	46784	46850	71525	71525					0.07556044057048439
RIGSKEVW	8	Unmodified	_RIGSKEVW_					0	0	0			REV__ENST00000602760.1_1_2:114647100-114647259:-|nuORF	REV__ENST00000602760.1_1_2:114647100-114647259:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.77850341796875	2	487.774534	973.534515	-0.88194	-0.00043019	1.0483	0.00051135	0.1664	8.1163E-05	487.7748682522522	52.266	0.73023	52.147	51.869	52.599	-0.11875					29	18	2	0	0	0	0.95679	1	5444	5444		44.117	1.7207	1	1615700	+		66332	35888	46785	46851	71526	71526					0.04668893508664951
RIGSSAARL	9	Unmodified	_RIGSSAARL_					0	0	0			REV__HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|19|2|anti-sense	REV__HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|19|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7774658203125	2	465.777608	929.540663	0.30012	0.00013979	-0.38376	-0.00017875	-0.083645	-3.896E-05	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.72875	1	9810	9810		44.117	3.5442	1	1281300	+		66333	36113	46786	46852	71527	71527					0.07307411740168845
RIGSSAARL	9	Unmodified	_RIGSSAARL_					0	0	0			REV__HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|19|2|anti-sense	REV__HERVH-int_dup4907|chr13:109270303-109270683:+|1.266046441895716|0.070975378394452|4.16|460.0|19|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.777587890625	2	465.777608	929.540663	-0.52618	-0.00024508	0.34984	0.00016295	-0.17634	-8.2136E-05	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.83071	1	9784	9784		37.159	1.5408	1	1029300	+		66334	36113	46786	46852	71528	71528					0.07307411740168845
RIGTKVAIE	9	Unmodified	_RIGTKVAIE_					0	0	0			REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|63|2|anti-sense	REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|63|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.8031921386719	2	493.803291	985.59203	1.6915	0.00083526	-2.0485	-0.0010116	-0.35704	-0.00017631	493.8022022343365	23.294	0.76568	23.103	22.851	23.616	-0.19117					41	17	4	0	0	0	0.35646	1	879	879		68.787	10.005	1	2247500	+		66335	36365	46787	46853	71529	71529					0.09865735714220136
RIHALCSAR	9	Carbamidomethyl (C)	_RIHALC(Carbamidomethyl (C))SAR_	RIHALC(1)SAR		RIHALC(48)SAR		0	1	0			REV__ENST00000377889.6_1_11:62623694-62648499:+|nuORF	REV__ENST00000377889.6_1_11:62623694-62648499:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2958984375	2	542.295642	1082.57673	2.3651	0.0012826	-2.8765	-0.0015599	-0.51145	-0.00027736	542.2939958365852	18.163	0.978	18.163	17.746	18.724	0					44	19	3	0	0	0	0.67687	1	257	257		47.657	10.498	1	848620	+		66336	31388	46788	46854	71530	71530	413				0.03874545645362559
RIHALCSAR	9	Carbamidomethyl (C)	_RIHALC(Carbamidomethyl (C))SAR_					0	1	0			REV__ENST00000377889.6_1_11:62623694-62648499:+|nuORF	REV__ENST00000377889.6_1_11:62623694-62648499:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.295642	1082.57673	0.53419	0.00028969	4.8098	0.0026083	5.344	0.002898	542.8001114567163	18.3	0.24523	18.144	18.002	18.247	-0.15637	-0.12099	0.0072503	NaN	47.657	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11407	+		66337	31388	46788	46854			413				0.03874545645362559
RIHIEKYL	8	Unmodified	_RIHIEKYL_					0	0	0		ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-5|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.316650390625	2	536.319109	1070.62366	-1.5308	-0.00082098	-1.2456	-0.00066805	-2.7764	-0.001489	536.3178948393053	21.06	1.0791	20.847	20.525	21.604	-0.2128					30	21	3	0	0	0	0.99042	1	605	605		38.806	1.647	1	634010			66338	2519	46789	46855	71531	71531					0.09117728468186215
RIHPVSTMV	9	Oxidation (M)	_RIHPVSTM(Oxidation (M))V_		RIHPVSTM(1)V		RIHPVSTM(120)V	0	0	1		ENSG00000111716|ENST00000350669|LDHB;ENST00000542765.4_1_12:21788478-21790169:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2867431640625	2	528.286951	1054.55935	-1.8264	-0.00096486	1.1941	0.00063082	-0.6323	-0.00033403	528.2874170511901	30.444	0.50043	30.444	30.216	30.717	0					31	11	4	0	0	0	0.082191	2	1962	1950;1962		116.9	48.419	1	3145400			66339	3141	46790	46856	71532;71533	71533		117			0.034252053197405985
RIHPVSTMV	9	Oxidation (M)	_RIHPVSTM(Oxidation (M))V_		RIHPVSTM(1)V		RIHPVSTM(120)V	0	0	1		ENSG00000111716|ENST00000350669|LDHB;ENST00000542765.4_1_12:21788478-21790169:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2867431640625	2	528.286951	1054.55935	-0.80027	-0.00042277	0.23772	0.00012558	-0.56255	-0.00029719	528.2868870292671	30.431	0.50072	30.439	30.205	30.706	0.0086708					33	11	4	0	0	0	0.082191	3	1939	1927;1939;1954		116.9	40.129	1	2925200			66340	3141	46790	46856	71534;71535;71536	71535		117			0.034252053197405985
RIHPVSTMV	9	Oxidation (M)	_RIHPVSTM(Oxidation (M))V_		RIHPVSTM(1)V		RIHPVSTM(110)V	0	0	1		ENSG00000111716|ENST00000350669|LDHB;ENST00000542765.4_1_12:21788478-21790169:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2865600585938	2	528.286951	1054.55935	-0.87048	-0.00045986	0.41914	0.00022143	-0.45134	-0.00023844	528.2869436192063	30.2	0.6235	30.274	29.962	30.586	0.074314					32	14	3	0	0	0	0.091713	3	1870	1860;1870;1884		113.41	53.118	1	3246100			66341	3141	46790	46856	71537;71538;71539	71538		117			0.034252053197405985
RIIAGWYHS	9	Unmodified	_RIIAGWYHS_					0	0	0			REV__nc|ENSG00000130396|P55196-3|AFDN	REV__nc|ENSG00000130396|P55196-3|AFDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8447265625	2	551.793258	1101.57196	0.27411	0.00015125	-1.4879	-0.000821	-1.2138	-0.00066975	551.7922887653763	82.877	1.0263	82.696	82.331	83.357	-0.18079					62	23	4	0	0	0	0.024487	1	9979	9979		24.203	10.427	1	593020	+		66342	23111	46791	46857	71540	71540					0.025239847742795973
RIIAGWYHS	9	Unmodified	_RIIAGWYHS_					0	0	0			REV__nc|ENSG00000130396|P55196-3|AFDN	REV__nc|ENSG00000130396|P55196-3|AFDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8446044921875	2	551.793258	1101.57196	-0.41363	-0.00022824	-0.82901	-0.00045744	-1.2426	-0.00068568	551.7925800203362	82.899	0.99338	82.759	82.303	83.296	-0.14013					62	22	5	0	0	0	0.024487	1	9964	9964		24.203	0	1	614720	+		66343	23111	46791	46857	71541	71541					0.025239847742795973
RIIAGWYHS	9	Unmodified	_RIIAGWYHS_					0	0	0			REV__nc|ENSG00000130396|P55196-3|AFDN	REV__nc|ENSG00000130396|P55196-3|AFDN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.793258	1101.57196	-0.50302	-0.00027756	-1.6168	-0.00089213	-2.1198	-0.0011697	551.7924835803794	82.857	0.43066	82.857	82.664	83.095	0	0.053565	-0.00044958	NaN	24.203	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123570	+		66344	23111	46791	46857							0.025239847742795973
RIICVYSF	8	Unmodified	_RIICVYSF_					0	0	0			REV__ENSG00000280204|ENST00000641544|OR1S1	REV__ENSG00000280204|ENST00000641544|OR1S1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.2723388671875	2	500.767863	999.521173	-0.59829	-0.0002996	3.926	0.001966	3.3277	0.0016664	500.77012611438226	39.334	1.6871	39.111	38.721	40.408	-0.22311					95	33	5	0	0	0	0.75307	1	3352	3352		62.978	7.4742	1	21522000	+		66345	29235	46792	46858	71542	71542					0.021393194050574493
RIIDVITQI	9	Unmodified	_RIIDVITQI_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.8373413085938	2	535.832049	1069.64954	-0.0090029	-4.8241E-06	-1.1598	-0.00062145	-1.1688	-0.00062627	535.8312662896171	71.792	1.4952	71.792	71.415	72.91	0					97	37	5	0	0	0	0.071379	3	8727	8716;8727;8741		120.87	35.953	1	6723400			66346	7820	46793	46859	71543;71544;71545	71544					0.11750577919792704
RIIDVITQI	9	Unmodified	_RIIDVITQI_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.8361206054688	2	535.832049	1069.64954	0.11159	5.9794E-05	-1.0347	-0.00055445	-0.92315	-0.00049466	535.8313217180141	72.146	1.4164	71.864	71.583	72.999	-0.28124					95	35	5	0	0	0	0.087669	3	8746	8734;8746;8759		114.89	39.851	1	6701500			66347	7820	46793	46859	71546;71547;71548	71547					0.11750577919792704
RIIDVITQI	9	Unmodified	_RIIDVITQI_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.837890625	2	535.832049	1069.64954	-0.12966	-6.9475E-05	-0.74495	-0.00039917	-0.8746	-0.00046864	535.8315012460451	71.924	1.4308	71.934	71.471	72.902	0.0097656					93	36	4	0	0	0	0.12914	4	8688	8652;8662;8675;8688		104.06	34.375	1	6821400			66348	7820	46793	46859	71549;71550;71551;71552	71552					0.11750577919792704
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MSMS	OPSCC_39_ClassI_Rep-1	1	531.8006591796875	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.801	1	56.801	56.301	57.301	0								0	0	0	0.067671	1	6355	6355		101.25	40.959	1				66349	5596	46794	46860	71553	71553					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MSMS	OPSCC_39_ClassI_Rep-1	1	531.8005981445312	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.864	1	56.864	56.364	57.364	0								0	0	0	0.3705	1	6367	6367		63.534	10.182	1				66350	5596	46794	46860	71554	71554					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MSMS	OPSCC_39_ClassI_Rep-1	1	531.801025390625	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.932	1	56.932	56.432	57.432	0								0	0	0	0.26342	1	6380	6380		70.816	20.792	1				66351	5596	46794	46860	71555	71555					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MSMS	OPSCC_39_ClassI_Rep-1	1	531.8005981445312	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.015	1	57.015	56.515	57.515	0								0	0	0	0.48619	1	6395	6395		54.722	4.6978	1				66352	5596	46794	46860	71556	71556					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8003540039062	2	531.800749	1061.58694	-0.48839	-0.00025973	-0.48878	-0.00025994	-0.97717	-0.00051966	531.8005540640878	56.993	1.6699	56.829	55.986	57.656	-0.16431					120	45	5	0	0	0	0.14181	3	6374	6349;6361;6374		101.25	38.152	1	25540000			66353	5596	46794	46860	71557;71558;71559	71559					0.058614318515992636
RIIDVVYNA	9	Unmodified	_RIIDVVYNA_					0	0	0		ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.80078125	2	531.800749	1061.58694	-0.49022	-0.0002607	-0.36494	-0.00019408	-0.85516	-0.00045477	531.8005667644943	56.705	1.0329	56.803	56.473	57.505	0.097897					98	28	6	0	0	0	0.18994	5	6262	6250;6262;6274;6286;6298		90.601	30.43	1	26863000			66354	5596	46794	46860	71560;71561;71562;71563;71564	71561					0.058614318515992636
RIIGKHPAKET	11	Unmodified	_RIIGKHPAKET_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.9033508300781	3	417.250695	1248.73025	0.058877	2.4566E-05	-1.1322	-0.0004724	-1.0733	-0.00044783	417.2499246749165	32.019	0.63643	31.826	31.392	32.029	-0.19261					19	14	2	0	0	0	0.02475	1	2184	2184		43.419	12.85	1	53770	+		66355	28655	46795	46861	71565	71565					0.11583858962694649
RIIGTEPEVSF	11	Unmodified	_RIIGTEPEVSF_					0	0	0			REV__ENSG00000040731|ENST00000264463|CDH10	REV__ENSG00000040731|ENST00000264463|CDH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.5582275390625	3	416.559194	1246.65575	0.35454	0.00014769	-2.5309	-0.0010543	-2.1764	-0.0009066	416.55804390745305	24.385	1.0842	24.463	24.048	25.132	0.078344					61	23	4	0	0	0	1.0371	1	1021	1021		28.577	0.93281	1	474550	+		66356	20093	46796	46862	71566	71566					0.04229051360653102
RIINVTKS	8	Unmodified	_RIINVTKS_					0	0	0		nc|ENSG00000144619|Q8IWV2-3|CNTN4;nc|ENSG00000144619|Q8IWV2-4|CNTN4;ENST00000430505.6_1_3:2613181-3079017:+|nuORF;ENSG00000144619|ENST00000418658|CNTN4;ENST00000438282.6_1_3:2613181-3030164:+|nuORF	nc|ENSG00000144619|Q8IWV2-3|CNTN4	nc|ENSG00000144619|Q8IWV2-3|CNTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.237060546875	2	465.790184	929.565815	-1.1329	-0.00052769	0.24963	0.00011628	-0.88325	-0.00041141	465.7903753117192	28.526	0.29254	28.526	28.362	28.655	0					9	6	2	0	0	0	0.027866	1	1665	1665		35.618	8.8222	1	45797			66357	5753	46797	46863	71567	71567					0.09821466542757662
RIIRLYGMI	9	Oxidation (M)	_RIIRLYGM(Oxidation (M))I_		RIIRLYGM(1)I		RIIRLYGM(42)I	0	0	1			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8438110351562	2	575.841894	1149.66923	-0.20793	-0.00011974	2.7491	0.001583	2.5411	0.0014633	575.8433179118674	102.57	0.50226	102.57	102.33	102.83	-0.0046082					31	11	4	0	0	0	0.75282	1	13075	13075		42.474	8.9589	1	609130	+		66358	25486	46798	46864	71568	71568		755			0.10038630658914371
RIIRLYGMI	9	Oxidation (M)	_RIIRLYGM(Oxidation (M))I_					0	0	1			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	575.841894	1149.66923	-0.20793	-0.00011974	2.7491	0.001583	2.5411	0.0014633	575.8433179118674	102.57	0.50226	102.57	102.33	102.83	-0.0046082	0.015432	-5.3998E-05	NaN	42.474	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609130	+		66359	25486	46798	46864				755			0.10038630658914371
RIIRLYGMI	9	Oxidation (M)	_RIIRLYGM(Oxidation (M))I_					0	0	1			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	575.841894	1149.66923	-0.31557	-0.00018172	2.8525	0.0016426	2.5369	0.0014608	575.843249217509	102.67	0.43951	102.54	102.28	102.72	-0.12666	-0.010557	6.5085E-05	NaN	42.474	29	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374640	+		66360	25486	46798	46864				755			0.10038630658914371
RIIVVSFYL	9	Unmodified	_RIIVVSFYL_					0	0	0			REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2774047851562	2	555.33951	1108.66447	-0.37552	-0.00020854	1.4726	0.00081778	1.0971	0.00060924	555.3416542876101	41.758	0.15287	41.53	41.434	41.587	-0.2278					5	3	2	0	0	0	0.024541	1	3706	3706		17.365	6.4994	1	48174	+		66361	28278	46799	46865	71569	71569					0.11448069787797976
RIKAINTFF	9	Unmodified	_RIKAINTFF_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.3260498046875	2	555.326934	1108.63931	-0.44125	-0.00024504	-0.003832	-2.128E-06	-0.44508	-0.00024717	555.3269128304561	54.707	1.015	54.561	54.141	55.156	-0.14609					61	27	4	0	0	0	0.29158	2	5828	5828;5840		76.774	27.333	1	2089500			66362	6894	46800	46866	71570;71571	71570					0.08934014985220529
RIKAINTFF	9	Unmodified	_RIKAINTFF_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.3261108398438	2	555.326934	1108.63931	-0.086699	-4.8146E-05	-0.43983	-0.00024425	-0.52653	-0.0002924	555.3265987681949	54.809	0.64742	54.578	54.315	54.963	-0.23087					51	17	4	0	0	0	0.39228	2	5851	5839;5851		66.429	18.514	1	1983300			66363	6894	46800	46866	71572;71573	71573					0.08934014985220529
RIKAINTFF	9	Unmodified	_RIKAINTFF_					0	0	0		ENST00000521120.1_1_12:50835423-50848201:+|nuORF;nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	ENST00000521120.1_1_12:50835423-50848201:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.3265991210938	2	555.326934	1108.63931	0.70416	0.00039104	-1.1966	-0.00066451	-0.49246	-0.00027348	555.3261946519004	54.763	0.81561	54.557	54.197	55.013	-0.20613					53	20	4	0	0	0	0.4752	1	5826	5826		60.972	21.719	1	2070800			66364	6894	46800	46866	71574	71574					0.08934014985220529
RIKALKTAV	9	Unmodified	_RIKALKTAV_					0	0	0			REV__ENSG00000149084|ENST00000278353|HSD17B12	REV__ENSG00000149084|ENST00000278353|HSD17B12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7703857421875	2	500.337301	998.66005	-0.57438	-0.00028738	-2.0131	-0.0010072	-2.5875	-0.0012946	500.8377311377735	39.391	0.1517	39.168	39.073	39.225	-0.22311					5	3	2	0	0	0	0.024539	1	3327	3327		20.947	0	1	31767	+		66365	24651	46801	46867	71575	71575					0.1606660536488107
RIKEGAAYLDQ	11	Unmodified	_RIKEGAAYLDQ_					0	0	0			REV__nc|ENSG00000276850|P13928-3|ANXA8	REV__nc|ENSG00000276850|P13928-3|ANXA8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.2560729980469	3	421.894577	1262.6619	-0.084052	-3.5461E-05	1.9105	0.00080601	1.8264	0.00077055	421.89547007633763	21.884	0.29072	21.693	21.468	21.758	-0.19072					11	5	3	0	0	0	0.024751	1	711	711		27.644	0	1	14534	+		66366	19340	46802	46868	71576	71576					0.04107569592156324
RIKELPELW	9	Unmodified	_RIKELPELW_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.34521484375	2	592.345323	1182.67609	-0.6373	-0.0003775	0.47781	0.00028303	-0.15949	-9.4475E-05	592.3454667091476	61.498	1.0118	61.284	60.96	61.972	-0.21375					58	24	4	0	0	0	0.067814	2	6884	6873;6884		122.18	41.721	1	2283700			66367	7280	46803	46869	71577;71578	71578					0.09206266811111163
RIKELPELW	9	Unmodified	_RIKELPELW_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.3447265625	2	592.345323	1182.67609	-1.6051	-0.00095076	1.4128	0.00083686	-0.19228	-0.0001139	592.3460238855494	61.315	1.0134	61.139	60.793	61.806	-0.1761					64	24	4	0	0	0	0.2101	1	6852	6852		87.696	30.975	1	2476300			66368	7280	46803	46869	71579	71579					0.09206266811111163
RIKELPELW	9	Unmodified	_RIKELPELW_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.34521484375	2	592.345323	1182.67609	-0.92652	-0.00054882	0.63281	0.00037484	-0.2937	-0.00017397	592.3455623499017	61.538	1.0897	61.28	60.888	61.978	-0.25725					66	26	5	0	0	0	0.19099	3	6891	6866;6877;6891		90.37	23.941	1	2554900			66369	7280	46803	46869	71580;71581;71582	71582					0.09206266811111163
RIKGEPNR	8	Unmodified	_RIKGEPNR_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.283447265625	2	485.283057	968.551562	-0.82589	-0.00040079	0.18452	8.9543E-05	-0.64138	-0.00031125	485.28324341775743	21.56	1.7451	21.56	21.195	22.94	0					108	36	6	0	0	0	0.71063	1	695	695		66.429	18.514	1	9057800	+		66370	24258	46804	46870	71583	71583					0.06602814114467037
RIKGEPNR	8	Unmodified	_RIKGEPNR_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.28326416015625	2	485.283057	968.551562	-0.77196	-0.00037462	0.12227	5.9337E-05	-0.64969	-0.00031528	485.2831968858641	21.498	1.9183	21.569	21.057	22.975	0.071487					104	39	5	0	0	0	0.76379	1	640	640		62.107	12.666	1	9782400	+		66371	24258	46804	46870	71584	71584					0.06602814114467037
RIKIKQGCN	9	Unmodified	_RIKIKQGCN_					0	0	0			REV__ENSG00000145390|ENST00000692078|USP53	REV__ENSG00000145390|ENST00000692078|USP53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2986450195312	2	530.308218	1058.60188	2.5623	0.0013588	2.6202	0.0013895	5.1825	0.0027483	530.3097596649171	18.014	0.24543	18.014	17.94	18.186	0					7	4	2	0	0	0	0.024457	1	239	239		37.159	0	1	48572	+		66372	24406	46805	46871	71585	71585					0.07492600447972109
RIKKKKRH	8	Unmodified	_RIKKKKRH_					0	0	0			REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3270263671875	2	547.375084	1092.73561	-0.69144	-0.00037848	-4.4036	-0.0024104	-5.0951	-0.0027889	547.3730486246363	41.57	0.53568	41.446	41.189	41.725	-0.12317					21	14	2	0	0	0	0.027866	1	3733	3733		54.765	8.8127	1	125690	+		66373	30220	46806	46872	71586	71586					0.19295627335827703
RIKKKKRH	8	Unmodified	_RIKKKKRH_					0	0	0			REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	REV__ENST00000312438.7_1_11:67134982-67141182:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.326904296875	2	547.375084	1092.73561	-0.65461	-0.00035832	-4.2453	-0.0023238	-4.8999	-0.0026821	547.3732024957701	41.285	0.21116	41.308	41.182	41.394	0.023006					7	5	2	0	0	0	0.027866	1	3646	3646		54.765	10.234	1	110550	+		66374	30220	46806	46872	71587	71587					0.19295627335827703
RIKKSRGKS	9	Unmodified	_RIKKSRGKS_					0	0	0			REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3007202148438	2	530.340907	1058.66726	-1.4049	-0.00074506	-0.97292	-0.00051598	-2.3778	-0.001261	530.3404157627627	38.738	0.11435	38.574	38.476	38.59	-0.16458					4	2	2	0	0	0	0.024495	1	3226	3226		34.173	8.5985	1	31262	+		66375	35784	46807	46873	71588	71588					0.14027337965330844
RIKNEEPK	8	Unmodified	_RIKNEEPK_					0	0	0			REV__nc|ENSG00000025156|Q03933-2|HSF2	REV__nc|ENSG00000025156|Q03933-2|HSF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.80682373046875	2	507.290548	1012.56654	0.20262	0.00010279	3.0254	0.0015348	3.228	0.0016375	507.2908532898538	21.033	1.1178	20.856	20.138	21.256	-0.17721					50	22	3	0	0	0	0.027866	1	577	577		29.15	0	1	230340	+		66376	20019	46808	46874	71589	71589					0.060762611917994036
RIKQESNQI	9	Unmodified	_RIKQESNQI_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENST00000465749.2_1_10:61846327-61848039:-|nuORF;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.3119506835938	2	558.312012	1114.60947	-0.34806	-0.00019433	0.12971	7.2419E-05	-0.21835	-0.00012191	558.3120178642577	22.408	0.83513	22.408	22.152	22.987	0					47	17	4	0	0	0	0.27161	2	781	781;793		79.451	17.821	1	1192200			66377	6183;18381	46809	46875	71590;71591	71590					0.05675031249234053
RIKQESNQI	9	Unmodified	_RIKQESNQI_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENST00000465749.2_1_10:61846327-61848039:-|nuORF;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.311767578125	2	558.312012	1114.60947	-0.5863	-0.00032734	0.25752	0.00014378	-0.32878	-0.00018356	558.3121403502062	22.508	0.65431	22.433	22.13	22.784	-0.075296					44	13	5	0	0	0	0.14024	3	778	778;789;802		101.6	35.171	1	1177500			66378	6183;18381	46809	46875	71592;71593;71594	71592					0.05675031249234053
RIKQESNQI	9	Unmodified	_RIKQESNQI_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENST00000465749.2_1_10:61846327-61848039:-|nuORF;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3117065429688	2	558.312012	1114.60947	-0.95498	-0.00053318	0.55046	0.00030733	-0.40452	-0.00022585	558.3122770398202	22.314	0.85343	22.388	22.078	22.931	0.073954					47	17	4	0	0	0	0.096521	1	721	721		111.65	15.833	1	1287800			66379	6183;18381	46809	46875	71595	71595					0.05675031249234053
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MSMS	OPSCC_40_ClassI_Rep-1	4	529.8191528320312	2	529.819473	1057.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.778	1	19.618	19.118	20.118	-0.16079								0	0	0	0.025861	1	466	466		122.18	6.6819	1				66380	1210	46810	46876	71596	71596					0.09788523117231307
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MSMS	OPSCC_40_ClassI_Rep-1	4	529.8191528320312	2	529.819473	1057.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.876	1	19.715	19.215	20.215	-0.16079								0	0	0	0.1093	1	478	478		90.37	13.052	1				66381	1210	46810	46876	71597	71597					0.09788523117231307
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.8191528320312	2	529.819473	1057.62439	0.5795	0.00030703	-1.1214	-0.00059416	-0.54195	-0.00028713	529.8189208308113	19.871	1.4202	19.671	19.305	20.725	-0.2001					67	28	5	0	0	0	0.067814	3	471	459;471;485		122.18	26.361	1	4395400			66382	1210	46810	46876	71598;71599;71600	71599					0.09788523117231307
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8192749023438	2	529.819473	1057.62439	0.88051	0.00046651	-1.4719	-0.00077982	-0.59135	-0.00031331	529.8187423488521	19.845	1.6257	19.612	19.226	20.851	-0.23345					80	32	5	0	0	0	0.067814	2	447	447;459		122.18	20.575	1	4033900			66383	1210	46810	46876	71601;71602	71601					0.09788523117231307
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.819473	1057.62439	0.1966	0.00010416	-0.9467	-0.00050158	-0.7501	-0.00039742	529.8189156603142	19.426	0.53033	19.426	19.07	19.6	0	-0.07564	0.00046234	NaN	122.18	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48087			66384	1210	46810	46876							0.09788523117231307
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.819473	1057.62439	-0.48053	-0.0002546	-0.29621	-0.00015694	-0.77674	-0.00041153	529.819230808029	19.638	0.53557	19.52	19.151	19.686	-0.11872	0.017749	0.0011516	NaN	122.18	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64129			66385	1210	46810	46876							0.09788523117231307
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.819473	1057.62439	2.3852	0.0012637	-2.7769	-0.0014712	-0.3917	-0.00020753	529.8178431462671	19.558	0.44441	19.624	19.291	19.735	0.066195	0.12225	-0.001477	NaN	122.18	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47752			66386	1210	46810	46876							0.09788523117231307
RIKQKADSL	9	Unmodified	_RIKQKADSL_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.819473	1057.62439	0.21035	0.00011145	-1.6546	-0.00087663	-1.4442	-0.00076519	529.8186927033977	19.319	0.34801	19.159	18.885	19.233	-0.16079	-0.34325	-0.00028777	NaN	122.18	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79266			66387	1210	46810	46876							0.09788523117231307
RIKQKQSQL	9	Unmodified	_RIKQKQSQL_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENSG00000198176|ENST00000375370|TFDP1;TUBGCP3-TFDP1|1|fusion	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8458251953125	2	564.846022	1127.67749	0.22141	0.00012506	-0.36663	-0.00020709	-0.14522	-8.2026E-05	564.8456412582856	18.441	0.34698	18.237	18.064	18.411	-0.20371					15	6	3	0	0	0	0.67687	1	300	300		47.657	3.2801	1	189890			66388	16486	46811	46877	71603	71603					0.11875900899894987
RIKQKQSQL	9	Unmodified	_RIKQKQSQL_					0	0	0		ENST00000544902.5_1_13:114277566-114294579:+|nuORF;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENSG00000198176|ENST00000375370|TFDP1;TUBGCP3-TFDP1|1|fusion	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	ENST00000544902.5_1_13:114277566-114294579:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	564.846022	1127.67749	0.81389	0.00045972	-0.71292	-0.00040269	0.10098	5.7036E-05	564.8456300789193	18.378	0.54147	18.222	17.854	18.396	-0.15637	-0.0076532	-0.00024537	NaN	47.657	23	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195620			66389	16486	46811	46877							0.11875900899894987
RIKQKYAEL	9	Unmodified	_RIKQKYAEL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.8429565429688	2	574.842948	1147.67134	-0.46911	-0.00026967	0.48097	0.00027648	0.011855	6.8147E-06	574.8431315103588	27.034	0.7609	26.792	26.488	27.249	-0.24217					45	17	4	0	0	0	0.20967	2	1465	1453;1465		87.754	23.547	1	1090000			66390	9931	46812	46878	71604;71605	71605					0.1034138266836635
RIKQKYAEL	9	Unmodified	_RIKQKYAEL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.8421020507812	2	574.842948	1147.67134	-0.53075	-0.0003051	0.3963	0.00022781	-0.13445	-7.7288E-05	574.8430577446052	26.864	0.76633	26.696	26.42	27.186	-0.16816					50	17	4	0	0	0	0.091713	2	1429	1429;1441		113.41	42.116	1	963280			66391	9931	46812	46878	71606;71607	71606					0.1034138266836635
RIKQKYAEL	9	Unmodified	_RIKQKYAEL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.8422241210938	2	574.842948	1147.67134	-0.6539	-0.00037589	0.32332	0.00018586	-0.33059	-0.00019004	574.843032718209	26.985	0.76262	26.828	26.503	27.266	-0.15664					51	17	5	0	0	0	0.26966	2	1422	1422;1433		79.713	10.085	1	1085900			66392	9931	46812	46878	71608;71609	71608					0.1034138266836635
RIKQTLSI	8	Unmodified	_RIKQTLSI_					0	0	0		nc|ENSG00000008394|P10620-2|MGST1	nc|ENSG00000008394|P10620-2|MGST1	nc|ENSG00000008394|P10620-2|MGST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2773132324219	2	479.805834	957.597115	-0.23618	-0.00011332	0.5029	0.0002413	0.26672	0.00012798	479.80587384523847	21.404	0.2888	21.475	21.303	21.591	0.071487					8	5	2	0	0	0	0.027866	1	599	599		37.159	6.6555	1	24674			66393	18032	46813	46879	71610	71610					0.11662039576845018
RIKRASLYGSA	11	Unmodified	_RIKRASLYGSA_					0	0	0			REV__ENSG00000180660|ENST00000379919|MAB21L1	REV__ENSG00000180660|ENST00000379919|MAB21L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3533935546875	2	611.356754	1220.69895	-0.32068	-0.00019605	-0.62425	-0.00038164	-0.94493	-0.00057769	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.0344	1	11878	11878		29.17	0	1	11218000	+		66394	27355	46814	46880	71611	71611					0.09743285928607293
RIKRASLYGSA	11	Unmodified	_RIKRASLYGSA_					0	0	0			REV__ENSG00000180660|ENST00000379919|MAB21L1	REV__ENSG00000180660|ENST00000379919|MAB21L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3549194335938	2	611.356754	1220.69895	-1.352	-0.00082658	0.3803	0.0002325	-0.97175	-0.00059408	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.0238	1	11849	11849		31.53	2.3598	1	11699000	+		66395	27355	46814	46880	71612	71612					0.09743285928607293
RIKSRPKIQLP	11	Unmodified	_RIKSRPKIQLP_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.6360168457031	3	445.957623	1334.85104	-0.81493	-0.00036342	4.0926	0.0018251	3.2777	0.0014617	445.9596827407617	39.449	0.21211	39.473	39.313	39.526	0.023727					6	5	2	0	0	0	0.024809	1	3332	3332		8.4073	5.3813	1	20971			66396	5048	46815	46881	71613	71613					0.19700686676173973
RIKSSLYV	8	Unmodified	_RIKSSLYV_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|104	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|104	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.27410888671875	2	483.292559	964.570566	-0.55694	-0.00026916	2.3659	0.0011434	1.809	0.00087428	483.2939686486805	30.344	0.29106	30.352	30.164	30.455	0.0086708					8	6	2	0	0	0	0.027866	1	1921	1921		50.025	7.6284	1	22820	+		66397	19467	46816	46882	71614	71614					0.08686350685513844
RILAAALTQH	10	Unmodified	_RILAAALTQH_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3273315429688	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.37169	1	3634	3634		101.6	2.9713	1	35496000			66398	7393	46817	46883	71615	71615					0.0977622935411091
RILAPVLGDS	10	Unmodified	_RILAPVLGDS_					0	0	0		nc|ENSG00000054392|Q5VTY9-4|HHAT	nc|ENSG00000054392|Q5VTY9-4|HHAT	nc|ENSG00000054392|Q5VTY9-4|HHAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.82080078125	2	520.808574	1039.60259	-0.96277	-0.00050142	-0.74634	-0.0003887	-1.7091	-0.00089012	520.8081814576019	80.857	0.5927	80.857	80.585	81.178	0					16	14	2	0	0	0	0.03519	1	10088	10088		45.972	25.025	1	273780			66399	18048	46818	46884	71616	71616					0.08437718368645619
RILAVIQGSH	10	Unmodified	_RILAVIQGSH_					0	0	0		nc|ENSG00000167112|O95900-2|TRUB2;ENSG00000167112|ENST00000372890|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3272705078125	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.45367	1	3643	3643		93.195	5.4412	1	33183000			66400	7651	46819	46885	71617	71617					0.09776229354133648
RILAVIQGSH	10	Unmodified	_RILAVIQGSH_					0	0	0		nc|ENSG00000167112|O95900-2|TRUB2;ENSG00000167112|ENST00000372890|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3274536132812	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.45367	3	3649	3649;3709;3721		93.195	5.4412	1	32648000			66401	7651	46819	46885	71618;71619;71620	71618					0.09776229354133648
RILAVIQGSH	10	Unmodified	_RILAVIQGSH_					0	0	0		nc|ENSG00000167112|O95900-2|TRUB2;ENSG00000167112|ENST00000372890|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3265991210938	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.45367	2	3682	3658;3682		93.195	5.4664	1	35496000			66402	7651	46819	46885	71621;71622	71622					0.09776229354133648
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.2843627929688	2	535.285463	1068.55637	-1.8141	-0.00097105	0.39777	0.00021292	-1.4163	-0.00075813	535.2856593643678	38.014	0.96413	38.014	37.632	38.597	0					61	27	4	0	0	0	0.077175	3	3141	3141;3151;3164		118.74	49.956	1	8091400			66403	2254	46820	46886	71623;71624;71625	71623					0.024836534665837462
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.2845458984375	2	535.285463	1068.55637	-1.5337	-0.00082098	0.20997	0.00011239	-1.3238	-0.00070859	535.2855722965288	37.936	1.2503	37.854	37.503	38.753	-0.082516					83	34	4	0	0	0	0.020687	3	3123	3113;3123;3135		148.99	47.386	1	8494500			66404	2254	46820	46886	71626;71627;71628	71627					0.024836534665837462
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.2843017578125	2	535.285463	1068.55637	-2.0831	-0.0011151	0.65231	0.00034917	-1.4308	-0.0007659	535.285781099616	38.153	1.4284	38.18	37.817	39.245	0.027275					86	39	4	0	0	0	0.077175	3	3132	3108;3118;3132		118.74	43.691	1	7881200			66405	2254	46820	46886	71629;71630;71631	71631					0.024836534665837462
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.285463	1068.55637	-0.75743	-0.00040544	2.0442	0.0010942	1.2868	0.00068881	535.2859101479479	38.091	0.42792	37.912	37.775	38.203	-0.17929	-0.06058	0.001788	NaN	148.99	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133700			66406	2254	46820	46886							0.024836534665837462
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.285463	1068.55637	-1.2259	-0.0006562	0.81644	0.00043703	-0.40945	-0.00021917	535.2857359044374	38.125	0.32445	37.903	37.761	38.085	-0.22149	-0.069662	0.0004736	NaN	148.99	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116130			66407	2254	46820	46886							0.024836534665837462
RILDSAEFI	9	Unmodified	_RILDSAEFI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.293212890625	2	532.292756	1062.57096	-1.5288	-0.00081378	0.97183	0.0005173	-0.557	-0.00029649	532.2931276640483	65.064	0.77974	65.064	64.578	65.358	0					28	21	2	0	0	0	0.2101	1	7695	7695		87.696	10.379	1	2515000			66408	10961	46821	46887	71632	71632					0.04217725614716983
RILDVAQDL	9	Unmodified	_RILDVAQDL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.S558F|1|0.15|ENSG00000125107|chr16:58576494-58576494|G/A|missense_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7974853515625	2	521.798206	1041.58186	-1.5505	-0.00080905	0.48639	0.0002538	-1.0641	-0.00055525	521.7982530916629	62.084	0.47951	62.084	61.796	62.275	0					34	13	4	0	0	0	0.54114	1	7232	7232		56.632	7.1907	1	3989500			66409	4087	46822	46888	71633	71633					0.0627312798899311
RILDVAQDL	9	Unmodified	_RILDVAQDL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.S558F|1|0.15|ENSG00000125107|chr16:58576494-58576494|G/A|missense_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7974853515625	2	521.798206	1041.58186	-0.89746	-0.00046829	-0.19661	-0.00010259	-1.0941	-0.00057088	521.797784192497	62.293	0.47356	62.053	61.791	62.264	-0.23926					41	13	5	0	0	0	0.087669	1	7224	7224		114.89	24.294	1	4598900			66410	4087	46822	46888	71634	71634					0.0627312798899311
RILDVAQDL	9	Unmodified	_RILDVAQDL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.S558F|1|0.15|ENSG00000125107|chr16:58576494-58576494|G/A|missense_variant	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7985229492188	2	521.798206	1041.58186	-1.2498	-0.00065215	-0.74677	-0.00038966	-1.9966	-0.0010418	521.7977152726995	62.053	0.52545	62.116	61.876	62.401	0.062767					26	14	2	0	0	0	0.27133	2	7132	7132;7143		79.489	14.047	1	3739600			66411	4087	46822	46888	71635;71636	71635					0.0627312798899311
RILDYVINL	9	Unmodified	_RILDYVINL_					0	0	0		nc|ENSG00000153832|Q8NEA4-3|FBXO36;ENSG00000153832|ENST00000283946|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.83154296875	2	559.832049	1117.64954	-0.31677	-0.00017734	0.22238	0.0001245	-0.09439	-5.2842E-05	559.831966398586	78.812	1.3387	78.812	78.531	79.87	0					101	31	4	0	0	0	0.056725	3	9766	9766;9777;9790		126.24	38.546	1	3102100			66412	6363	46823	46889	71637;71638;71639	71637					0.09542577919773976
RILDYVINL	9	Unmodified	_RILDYVINL_					0	0	0		nc|ENSG00000153832|Q8NEA4-3|FBXO36;ENSG00000153832|ENST00000283946|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.83154296875	2	559.832049	1117.64954	-0.66156	-0.00037036	0.59905	0.00033536	-0.06251	-3.4995E-05	559.832158678196	78.962	1.7548	78.77	78.422	80.177	-0.1921					114	41	4	0	0	0	0.062622	5	9737	9737;9748;9759;9771;9816		124.08	46.763	1	3397800			66413	6363	46823	46889	71640;71641;71642;71643;71644	71640					0.09542577919773976
RILDYVINL	9	Unmodified	_RILDYVINL_					0	0	0		nc|ENSG00000153832|Q8NEA4-3|FBXO36;ENSG00000153832|ENST00000283946|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.83154296875	2	559.832049	1117.64954	-0.14007	-7.8418E-05	-0.016712	-9.3561E-06	-0.15679	-8.7774E-05	559.831823225614	78.905	1.7462	78.924	78.609	80.355	0.018677					107	41	5	0	0	0	0.14181	4	9695	9685;9695;9707;9733		101.25	34.823	1	3344200			66414	6363	46823	46889	71645;71646;71647;71648	71646					0.09542577919773976
RILEALKV	8	Unmodified	_RILEALKV_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.310302734375	2	471.310752	940.606951	-0.043647	-2.0571E-05	-0.5522	-0.00026026	-0.59585	-0.00028083	471.3104944703835	48.396	1.4355	48.396	48.037	49.473	0					93	40	4	0	0	0	0.38451	2	4948	4922;4948		99.375	13.283	1	11903000			66415	6350	46824	46890	71649;71650	71650					0.13427227582224077
RILEALKV	8	Unmodified	_RILEALKV_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.3102111816406	2	471.310752	940.606951	-0.11805	-5.5637E-05	-0.28636	-0.00013496	-0.4044	-0.0001906	471.3105974486802	48.537	1.5779	48.384	48.092	49.669	-0.15277					99	43	4	0	0	0	0.32162	2	4927	4927;4951		108.09	8.3033	1	9454000			66416	6350	46824	46890	71651;71652	71651					0.13427227582224077
RILEALKV	8	Unmodified	_RILEALKV_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.31036376953125	2	471.310752	940.606951	0.16549	7.7998E-05	-0.71405	-0.00033654	-0.54855	-0.00025854	471.31033490871096	48.289	1.2648	48.356	48.043	49.308	0.066795					95	34	5	0	0	0	0.56592	1	4864	4864		79.451	8.1553	1	7919300			66417	6350	46824	46890	71653	71653					0.13427227582224077
RILESPLL	8	Unmodified	_RILESPLL_					0	0	0		nc|ENSG00000127412|Q9NQA5-2|TRPV5;ENSG00000127412|ENST00000265310|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.28570556640625	2	470.794935	939.575317	-0.31293	-0.00014733	0.92858	0.00043717	0.61565	0.00028985	470.79507491108245	22.652	0.61066	22.726	22.413	23.024	0.073954					21	12	3	0	0	0	0.027866	1	750	750		44.531	11.015	1	78687			66418	4241	46825	46891	71654	71654					0.10311234828293436
RILFPPGF	8	Unmodified	_RILFPPGF_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-3|USP43	REV__nc|ENSG00000154914|Q70EL4-3|USP43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7503662109375	2	473.779088	945.543623	-0.019513	-9.2448E-06	-3.1521	-0.0014934	-3.1716	-0.0015026	473.77745733826873	28.566	1.0075	28.562	28.078	29.085	-0.0042019					41	23	2	0	0	0	0.027866	1	1631	1631		23.037	8.3726	1	95367	+		66419	24980	46826	46892	71655	71655					0.06867286864996913
RILGCLQEP	9	Unmodified	_RILGCLQEP_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8171997070312	2	514.781502	1027.54845	-0.42664	-0.00021963	-2.4058	-0.0012385	-2.8325	-0.0014581	514.7800625471373	72.794	0.61811	72.794	72.454	73.072	0					36	14	3	0	0	0	0.024381	1	8830	8830		37.159	0	1	725070			66420	5068	46827	46893	71656	71656					0.03577802945437725
RILIPHQP	8	Unmodified	_RILIPHQP_					0	0	0		ENST00000227525.7_1_11:60690329-60690416:+|nuORF	ENST00000227525.7_1_11:60690329-60690416:+|nuORF	ENST00000227525.7_1_11:60690329-60690416:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2303161621094	2	487.300719	972.586885	-0.40252	-0.00019615	-0.49735	-0.00024236	-0.89987	-0.00043851	487.3002199625456	31.341	0.49221	31.1	30.915	31.407	-0.24109					24	12	3	0	0	0	0.027866	1	2100	2100		33.516	0	1	363160			66421	11212	46828	46894	71657	71657					0.0994947664225947
RILKEAVA	8	Unmodified	_RILKEAVA_					0	0	0			REV__nc|ENSG00000284922|Q8WZ04-2|TOMT	REV__nc|ENSG00000284922|Q8WZ04-2|TOMT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2873229980469	2	450.287277	898.560001	0.52407	0.00023598	-0.50361	-0.00022677	0.020466	9.2158E-06	450.2869400192566	37.144	1.4072	36.951	36.455	37.862	-0.193					82	36	4	0	0	0	0.59392	1	2956	2956		76.847	2.8719	1	3523600	+		66422	37214	46829	46895	71658	71658					0.10666368031081674
RILKEAVA	8	Unmodified	_RILKEAVA_					0	0	0			REV__nc|ENSG00000284922|Q8WZ04-2|TOMT	REV__nc|ENSG00000284922|Q8WZ04-2|TOMT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2873229980469	2	450.287277	898.560001	-0.79015	-0.0003558	0.80153	0.00036092	0.011377	5.1228E-06	450.2875030380692	37.201	1.127	36.982	36.488	37.615	-0.2195					75	28	4	0	0	0	0.46709	1	2957	2957		88.643	3.2834	1	3254200	+		66423	37214	46829	46895	71659	71659					0.10666368031081674
RILPRPESF	9	Unmodified	_RILPRPESF_					0	0	0			REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2593994140625	2	557.822015	1113.62948	0.21835	0.0001218	3.6828	0.0020543	3.9011	0.0021761	557.823924510637	79.757	0.58734	79.537	79.285	79.873	-0.21923					29	13	3	0	0	0	0.024427	1	9520	9520		26.693	1.2427	1	141110	+		66424	34191	46830	46896	71660	71660					0.0772082697985752
RILPRPESF	9	Unmodified	_RILPRPESF_					0	0	0			REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.822015	1113.62948	-0.27929	-0.0001558	9.3863	0.0052359	9.107	0.0050801	557.8277528380718	79.783	0.67376	79.783	79.489	80.163	0	0.14708	0.0045921	NaN	26.693	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64943	+		66425	34191	46830	46896							0.0772082697985752
RILPRPESF	9	Unmodified	_RILPRPESF_					0	0	0			REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.822015	1113.62948	-1.3444	-0.00074993	11.952	0.0066669	10.607	0.005917	557.8286675828891	79.999	0.5867	79.839	79.538	80.125	-0.15983	0.20344	0.0074541	NaN	26.693	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62995	+		66426	34191	46830	46896							0.0772082697985752
RILPVLFSV	9	Unmodified	_RILPVLFSV_					0	0	0		ENST00000345795.6_1_15:44673021-44673075:+|nuORF	ENST00000345795.6_1_15:44673021-44673075:+|nuORF	ENST00000345795.6_1_15:44673021-44673075:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.334228515625	2	522.334227	1042.6539	-1.2673	-0.00066193	0.9654	0.00050426	-0.30186	-0.00015767	522.3345756727065	83.498	0.85858	83.498	83.095	83.954	0					36	19	2	0	0	0	0.43973	1	10445	10445		63.306	13.282	1	1199300			66427	12566	46831	46897	71661	71661					0.13428087133388544
RILPVLFSV	9	Unmodified	_RILPVLFSV_					0	0	0		ENST00000345795.6_1_15:44673021-44673075:+|nuORF	ENST00000345795.6_1_15:44673021-44673075:+|nuORF	ENST00000345795.6_1_15:44673021-44673075:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3336791992188	2	522.334227	1042.6539	-0.80841	-0.00042226	0.46221	0.00024143	-0.34621	-0.00018084	522.3343102690208	83.478	2.3253	83.504	83.003	85.328	0.026558					70	54	2	0	0	0	0.33245	1	10357	10357		71.296	0	1	1068000			66428	12566	46831	46897	71662	71662					0.13428087133388544
RILQGAPEI	9	Unmodified	_RILQGAPEI_					0	0	0		nc|ENSG00000143363|Q86TP1-2|PRUNE1;ENSG00000143363|ENST00000271620|PRUNE1	nc|ENSG00000143363|Q86TP1-2|PRUNE1	nc|ENSG00000143363|Q86TP1-2|PRUNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7953186035156	2	498.795466	995.57638	0.12946	6.4576E-05	-0.48239	-0.00024062	-0.35293	-0.00017604	498.7951140358253	58.67	0.79811	58.483	58.173	58.971	-0.18705					44	21	3	0	0	0	0.59099	1	6614	6614		53.351	3.9099	1	3092700			66429	5637	46832	46898	71663	71663					0.07841449197189831
RILQTQESW	9	Unmodified	_RILQTQESW_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.808349609375	2	580.806562	1159.59857	-0.06324	-3.673E-05	0.087825	5.1009E-05	0.024585	1.4279E-05	580.8065738706871	49.55	0.94625	49.447	49.106	50.052	-0.10249					62	24	4	0	0	0	0.012922	3	4976	4976;4986;4998		172.25	76.525	1	5478900			66430	3643	46833	46899	71664;71665;71666	71664					0.02515628874948561
RILQTQESW	9	Unmodified	_RILQTQESW_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.8069458007812	2	580.806562	1159.59857	-0.71267	-0.00041392	0.64345	0.00037372	-0.069218	-4.0202E-05	580.8069010553373	49.846	1.0516	49.567	49.28	50.332	-0.27977					64	27	4	0	0	0	0.012922	3	5021	5010;5021;5035		172.25	76.525	1	5920600			66431	3643	46833	46899	71667;71668;71669	71668					0.02515628874948561
RILQTQESW	9	Unmodified	_RILQTQESW_					0	0	0		ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	580.806884765625	2	580.806562	1159.59857	-0.1912	-0.00011105	0.18457	0.0001072	-0.0066221	-3.8461E-06	580.8065723838653	49.66	1.0174	49.479	49.191	50.209	-0.18071					65	26	4	0	0	0	0.012922	3	4987	4987;4998;5009		172.25	79.105	1	6218600			66432	3643	46833	46899	71670;71671;71672	71670					0.02515628874948561
RILYGVLAL	9	Unmodified	_RILYGVLAL_					0	0	0			REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.32611083984375	2	509.326402	1016.63825	-0.048329	-2.4615E-05	-0.21789	-0.00011098	-0.26622	-0.00013559	509.32621852016973	77.811	0.80763	77.549	77.226	78.034	-0.26202					57	18	4	0	0	0	0.52323	1	9297	9297		57.811	7.7867	1	5836100	+		66433	23736	46834	46900	71673	71673					0.13059800616315442
RIMFLLSP	8	Unmodified	_RIMFLLSP_					0	0	0			REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	REV__ENST00000577511.1_2_17:72466240-72466369:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.27093505859375	2	488.786056	975.557558	-0.32295	-0.00015785	-2.9433	-0.0014386	-3.2662	-0.0015965	488.7822378607704	38.973	1.232	38.973	38.395	39.627	0					59	33	3	0	0	0	0.027866	1	3257	3257		21.96	0	1	1111300	+		66434	35477	46835	46901	71674	71674					0.06880196301767683
RIMILVVAA	9	Unmodified	_RIMILVVAA_					0	0	0		ENSG00000165474|ENST00000382848|GJB2	ENSG00000165474|ENST00000382848|GJB2	ENSG00000165474|ENST00000382848|GJB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3113098144531	2	493.31498	984.615408	1.937	0.00095554	2.3869	0.0011775	4.3239	0.002133	493.31603343379834	19.832	0.4785	19.898	19.687	20.165	0.066195					22	9	3	0	0	0	0.97516	1	428	428		25.45	1.2474	1	198290			66435	7415	46836	46902	71675	71675					0.12248458227202264
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(83)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7781982421875	2	473.778762	945.542971	0.27668	0.00013108	-2.0152	-0.00095474	-1.7385	-0.00082366	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.52467	2	1037	1025;1037		83.287	9.3125	1	5959600			66436	677;2049;1697;13251	46837	46903	71676;71677	71677		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(58)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.77825927734375	2	473.778762	945.542971	0.022224	1.0529E-05	-1.3908	-0.00065891	-1.3685	-0.00064838	473.77814502887514	23.195	0.85397	23.134	22.616	23.47	-0.060862					32	19	2	0	0	0	0.81662	2	879	879;892		57.811	17.239	1	7876100			66437	677;2049;1697;13251	46837	46903	71678;71679	71678		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(68)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	473.7782287597656	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.219	1	24.172	23.672	24.672	-0.047148								0	0	0	0.38842	1	1022	1022		68.485	13.72	1				66438	677;2049;1697;13251	46837	46903	71680	71680		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(71)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	473.7796936035156	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.77	1	24.723	24.223	25.223	-0.047148								0	0	0	0.36617	1	1096	1096		71.378	11.084	1				66439	677;2049;1697;13251	46837	46903	71681	71681		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(58)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	473.779052734375	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.895	1	24.861	24.361	25.361	-0.034395								0	0	0	0.47049	1	1113	1113		57.811	6.4758	1				66440	677;2049;1697;13251	46837	46903	71682	71682		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(66)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-3	3	473.7781982421875	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.109	1	23.185	22.685	23.685	0.076241								0	0	0	0.40904	1	832	832		65.803	15.779	1				66441	677;2049;1697;13251	46837	46903	71683	71683		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(66)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-3	3	473.77862548828125	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.195	1	23.272	22.772	23.772	0.076241								0	0	0	0.40904	1	846	846		65.803	17.888	1				66442	677;2049;1697;13251	46837	46903	71684	71684		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(42)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-3	3	473.7786865234375	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.851	1	23.927	23.427	24.427	0.076241								0	0	0	0.68408	1	938	938		42.474	7.2737	1				66443	677;2049;1697;13251	46837	46903	71685	71685		18			0.06802124153625755
RIMKAQAL	8	Oxidation (M)	_RIM(Oxidation (M))KAQAL_		RIM(1)KAQAL		RIM(58)KAQAL	0	0	1		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-3	3	473.77886962890625	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.838	1	24.916	24.416	25.416	0.078344								0	0	0	0.47049	1	1068	1068		57.811	17.239	1				66444	677;2049;1697;13251	46837	46903	71686	71686		18			0.06802124153625755
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-1	1	465.7820739746094	2	465.781305	929.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.359	1	29.359	28.859	29.859	0								0	0	0	0.35313	1	1793	1793		101.21	32.727	1				66445	677;2049;1697;13251	46837	46904	71687	71687					0.08046428016234586
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-1	1	465.7811279296875	2	465.781305	929.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.436	1	29.436	28.936	29.936	0								0	0	0	0.32412	1	1805	1805		76.847	10.417	1				66446	677;2049;1697;13251	46837	46904	71688	71688					0.08046428016234586
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-1	1	465.78021240234375	2	465.781305	929.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.517	1	29.517	29.017	30.017	0								0	0	0	0.34931	1	1817	1817		92.191	18.216	1				66447	677;2049;1697;13251	46837	46904	71689	71689					0.08046428016234586
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	465.78143310546875	2	465.781305	929.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.38	1	29.383	28.883	29.883	0.0031357								0	0	0	0.33361	1	1784	1784		110.34	41.55	1				66448	677;2049;1697;13251	46837	46904	71690	71690					0.08046428016234586
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	465.77972412109375	2	465.781305	929.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.495	1	29.498	28.998	29.998	0.0031357								0	0	0	0.34445	1	1801	1801		105.27	21.982	1				66449	677;2049;1697;13251	46837	46904	71691	71691					0.08046428016234586
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-3	3	465.779052734375	2	465.781305	929.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.279	1	29.357	28.857	29.857	0.078344								0	0	0	0.38842	1	1732	1732		68.485	10.673	1				66450	677;2049;1697;13251	46837	46904	71692	71692					0.08046428016234586
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	DYNC1H1-HSP90AA1|1|fusion	MSMS	OPSCC_39_ClassI_Rep-3	3	465.77435302734375	2	465.781305	929.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.362	1	29.44	28.94	29.94	0.078344								0	0	0	0.32412	1	1744	1744		76.847	13.54	1				66451	677;2049;1697;13251	46837	46904	71693	71693					0.08046428016234586
RIMMEEER	8	Unmodified	_RIMMEEER_					0	0	0			REV__nc|ENSG00000116560|P23246-2|SFPQ	REV__nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3273315429688	2	547.260076	1092.5056	-0.31293	-0.00017125	-3.6497	-0.0019973	-3.9626	-0.0021686	547.2579279896268	41.692	0.18069	41.692	41.542	41.722	0					7	4	2	0	0	0	0.027866	1	3775	3775		82.305	0	1	68709	+		66452	22282	46838	46905	71694	71694					-0.03695335174302272
RIMPLLIA	8	Unmodified	_RIMPLLIA_					0	0	0		ENST00000449503.6_1_3:57743439-57817152:+|nuORF	ENST00000449503.6_1_3:57743439-57817152:+|nuORF	ENST00000449503.6_1_3:57743439-57817152:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	2	463.796423	925.578294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.764	1	41.787	41.287	42.287	0.023006								0	0	0	0.70236	1	3727	3727		41.208	0	1				66453	14499	46839	46906	71695	71695					0.1125278668143892
RIMWLTCSW	9	Unmodified	_RIMWLTCSW_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	598.28955078125	2	598.291179	1194.56781	-0.90232	-0.00053985	-3.1976	-0.0019131	-4.0999	-0.0024529	598.289266566561	27.095	0.74086	26.852	26.335	27.076	-0.24217					47	17	3	0	0	0	0.90698	1	1472	1472		31.955	0.42505	1	841690	+		66454	24979	46840	46907	71696	71696					-0.021695640353300405
RIMWRRRQYLR	11	Unmodified	_RIMWRRRQYLR_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2822265625	3	545.315927	1632.92595	0.11683	6.3711E-05	-4.1639	-0.0022706	-4.0471	-0.0022069	545.3134666237935	50.838	0.18648	50.726	50.563	50.749	-0.11163					6	4	2	0	0	0	0.02489	1	5170	5170		5.6988	4.3769	1	874230	+		66455	27829	46841	46908	71697	71697					0.13480545935749433
RINIPPPSV	9	Unmodified	_RINIPPPSV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2724609375	2	496.798009	991.581465	0.19376	9.6261E-05	-0.25073	-0.00012456	-0.056971	-2.8303E-05	496.7976797752236	52.141	2.1623	52.141	51.6	53.763	0					135	58	5	0	0	0	0.024209	1	5629	5629		56.721	1.9564	1	2065200			66456	3480	46842	46909	71698	71698					0.08533753059805349
RINIPPPSV	9	Unmodified	_RINIPPPSV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2718811035156	2	496.798009	991.581465	-0.094974	-4.7183E-05	0.08651	4.2978E-05	-0.0084639	-4.2049E-06	496.79783824827797	52.19	2.1669	52.043	51.544	53.711	-0.14735					144	58	5	0	0	0	0.024209	1	5623	5623		39.253	0	1	2352700			66457	3480	46842	46909	71699	71699					0.08533753059805349
RINIPPPSV	9	Unmodified	_RINIPPPSV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.27203369140625	2	496.798009	991.581465	-0.38734	-0.00019243	0.0068001	3.3783E-06	-0.38054	-0.00018905	496.79792871475973	51.905	2.0399	51.997	51.549	53.589	0.091938					102	54	2	0	0	0	0.024319	1	5543	5543		47.657	23.455	1	1775300			66458	3480	46842	46909	71700	71700					0.08533753059805349
RINLLFQP	8	Unmodified	_RINLLFQP_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.821044921875	2	500.800552	999.58655	0.1291	6.4652E-05	3.6365	0.0018212	3.7656	0.0018858	500.80227362004456	39.341	0.52118	39.341	39.041	39.562	0					24	14	2	0	0	0	0.027866	1	3407	3407		35.201	0	1	258420	+		66459	34101	46843	46910	71701	71701					0.08674056922427553
RINLLKET	8	Unmodified	_RINLLKET_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG;NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.80718994140625	2	493.803291	985.59203	-0.11361	-5.6103E-05	-0.3828	-0.00018903	-0.49642	-0.00024513	493.80294475911785	51.74	0.51331	51.621	51.319	51.833	-0.11876					30	13	3	0	0	0	0.027866	1	5359	5359		21.96	0	1	897980			66460	2999	46844	46911	71702	71702					0.09865735714231505
RINPKTGGI	9	Unmodified	_RINPKTGGI_					0	0	0		nc|ENSG00000081760|Q86V21-3|AACS;ENSG00000081760|ENST00000316519|AACS;ENST00000543665.2_1_12:125613738-125626756:+|nuORF;ENST00000545511.5_1_12:125609137-125626756:+|nuORF;nc|ENSG00000081760|Q86V21-2|AACS	nc|ENSG00000081760|Q86V21-3|AACS	nc|ENSG00000081760|Q86V21-3|AACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2994079589844	2	478.287808	954.561064	0.57595	0.00027547	-2.8189	-0.0013483	-2.243	-0.0010728	478.2861535158616	72.622	0.12285	72.632	72.529	72.652	0.0097733					4	2	2	0	0	0	0.024261	1	8756	8756		64.207	6.396	1	88021			66461	1713	46845	46912	71703	71703					0.08196582400000807
RIPECLPP	8	Unmodified	_RIPECLPP_					0	0	0		ENST00000319176.11_1_12:117178214-117178884:+|nuORF	ENST00000319176.11_1_12:117178214-117178884:+|nuORF	ENST00000319176.11_1_12:117178214-117178884:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7713317871094	2	462.752213	923.489873	0.78324	0.00036244	3.4792	0.00161	4.2624	0.0019724	462.75382243335474	25.349	1.0103	25.429	24.825	25.835	0.08009					45	23	3	0	0	0	0.027866	1	1088	1088		60.294	12.378	1	442300			66462	12180	46846	46913	71704	71704					0.025067463709547155
RIPENRIR	8	Unmodified	_RIPENRIR_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB;ENST00000460323.1_1_1:151275853-151278830:-|nuORF	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.256591796875	2	527.317432	1052.62031	0.9233	0.00048687	-1.15	-0.00060642	-0.22671	-0.00011955	527.3166350987191	17.837	0.64706	17.683	17.209	17.857	-0.15403					15	12	2	0	0	0	0.027866	1	187	187		23.042	7.4007	1	52506			66463	5646	46847	46914	71705	71705					0.09610478414174395
RIPENRIR	8	Unmodified	_RIPENRIR_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB;ENST00000460323.1_1_1:151275853-151278830:-|nuORF	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.317432	1052.62031	-0.33559	-0.00017696	0.3409	0.00017977	0.0053104	2.8003E-06	527.3174887033309	17.88	0.49752	17.674	17.464	17.962	-0.20669	0.0069733	0.0034398	NaN	23.042	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43524			66464	5646	46847	46914							0.09610478414174395
RIPENRIR	8	Unmodified	_RIPENRIR_					0	0	0		nc|ENSG00000143393|Q9UBF8-3|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB;ENST00000460323.1_1_1:151275853-151278830:-|nuORF	nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-3|PI4KB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.317432	1052.62031	3.9753	0.0020963	-4.4502	-0.0023467	-0.47488	-0.00025041	527.3149783550691	17.895	0.54519	17.644	17.421	17.966	-0.25049	-0.0228	-0.0016131	NaN	23.042	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48219			66465	5646	46847	46914							0.09610478414174395
RIPFLAKI	8	Unmodified	_RIPFLAKI_					0	0	0			REV__ENST00000536984.6_2_18:63418077-63476947:+|nuORF	REV__ENST00000536984.6_2_18:63418077-63476947:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2773132324219	2	479.315838	956.617122	0.40611	0.00019466	-4.2995	-0.0020608	-3.8934	-0.0018662	479.3135529553359	20.988	0.63933	21.057	20.71	21.349	0.068901					27	12	3	0	0	0	0.027866	1	599	599		20.482	0	1	73001	+		66466	34692	46848	46915	71706	71706					0.13707835307468486
RIPHRVEASL	10	Unmodified	_RIPHRVEASL_					0	0	0		nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;ENST00000393299.6_1_6:71138108-71233862:+|nuORF;FAM135A|p.K660Sfs*15|1|0.07|ENSG00000082269|chr6:70525061-70525062|-/TCTGG|frameshift_variant;FAM135A|p.K660Rfs*17|1|0.07|ENSG00000082269|chr6:70525062-70525063|-/GACTTTTGTTC|frameshift_variant	nc|ENSG00000082269|Q9P2D6-2|FAM135A	nc|ENSG00000082269|Q9P2D6-2|FAM135A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3436279296875	2	589.343646	1176.67274	-1.5173	-0.0008942	0.36419	0.00021464	-1.1531	-0.00067957	589.3436932414581	103.63	0.73327	103.63	103.38	104.12	0					46	17	4	0	0	0	1.1265	1	13319	13319		24.519	0	1	562530			66467	1730	46849	46916	71707	71707					0.09147016757151505
RIPKASAKF	9	Unmodified	_RIPKASAKF_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3050842285156	2	509.313826	1016.6131	0.3605	0.00018361	-3.8671	-0.0019695	-3.5066	-0.0017859	509.3117125328371	22.302	0.18409	22.113	22.007	22.191	-0.18894					6	3	2	0	0	0	0.024511	1	770	770		25.574	0	1	37090			66468	3495	46850	46917	71708	71708					0.10545745813737994
RIPLLICPL	9	Unmodified	_RIPLLICPL_					0	0	0			REV__ENST00000369408.9_1_6:90305635-90305698:+|nuORF	REV__ENST00000369408.9_1_6:90305635-90305698:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7747802734375	2	519.33063	1036.64671	-0.92398	-0.00047985	4.1027	0.0021306	3.1787	0.0016508	519.332705766097	43.18	0.97874	43.18	42.679	43.658	0					72	26	5	0	0	0	0.024535	1	4000	4000		25.45	5.4534	1	1743300	+		66469	31087	46851	46918	71709	71709					0.12985031261268887
RIPLNVRDI	9	Unmodified	_RIPLNVRDI_					0	0	0		ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3351440429688	2	548.33529	1094.65603	-1.3827	-0.0007582	0.18392	0.00010085	-1.1988	-0.00065735	548.3353474770954	43.792	0.89397	43.647	43.205	44.099	-0.14471					74	24	5	0	0	0	0.31037	1	4125	4125		74.255	5.4682	1	7697700			66470	1484	46852	46919	71710	71710					0.11248515871170639
RIPLQAQKL	9	Unmodified	_RIPLQAQKL_					0	0	0		ENSG00000087586|ENST00000395915|AURKA;chr20:56390665-56392154|499|12.17|0.64|4.25|-|ENST00000441357|AURKA,AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7999877929688	2	533.840208	1065.66586	-0.77414	-0.00041327	-0.18764	-0.00010017	-0.96178	-0.00051344	533.8400945857112	57.055	0.67136	57.055	56.712	57.384	0					27	18	2	0	0	0	0.024457	1	6436	6436		45.952	11.779	1	197220			66471	1854	46853	46920	71711	71711					0.13565703876543012
RIPMTPIP	8	Unmodified	_RIPMTPIP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7713317871094	2	462.770406	923.526258	0.79623	0.00036847	3.2681	0.0015124	4.0643	0.0018809	462.7717279262154	24.964	1.3675	25.042	24.639	26.007	0.078344					58	31	3	0	0	0	0.78609	1	1088	1088		60.294	6.9425	1	658980	+		66472	25017	46854	46921	71712	71712					0.06143623267666953
RIPMTPIP	8	Unmodified	_RIPMTPIP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.770406	923.526258	-0.97421	-0.00045084	5.1863	0.0024001	4.2121	0.0019492	462.77261717733603	25.052	1.1275	25.018	24.681	25.809	-0.034397	0.0020752	0.00043039	NaN	60.294	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	727130	+		66473	25017	46854	46921							0.06143623267666953
RIPMTPIP	8	Unmodified	_RIPMTPIP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	462.770406	923.526258	0.79623	0.00036847	3.2681	0.0015124	4.0643	0.0018809	462.7717279262154	24.964	1.3675	25.042	24.639	26.007	0.078344	0.026366	-0.001345	NaN	60.294	58	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658980	+		66474	25017	46854	46921							0.06143623267666953
RIPNLKKR	8	Unmodified	_RIPNLKKR_					0	0	0		nc|ENSG00000189212|Q6NXN4|DPY19L2P1;ENST00000439473.5_1_7:102916053-102920599:-|nuORF;ENST00000312132.8_1_7:102916053-102920599:-|nuORF	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7744750976562	2	512.840542	1023.66653	-0.21092	-0.00010817	-2.0402	-0.0010463	-2.2511	-0.0011544	512.8394360090047	24.295	0.16174	24.121	24.007	24.169	-0.17484					8	3	3	0	0	0	0.027866	1	1030	1030		8.2313	0	1	23659			66475	18613	46855	46922	71713	71713					0.15564543316270374
RIPRRTPASP	10	Unmodified	_RIPRRTPASP_					0	0	0		ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.84326171875	2	575.843813	1149.67307	-0.089209	-5.1371E-05	-0.75438	-0.00043441	-0.84359	-0.00048578	575.8431556288429	102.51	0.49976	102.52	102.28	102.78	0.0073471					32	11	4	0	0	0	1.0992	1	13101	13101		32.812	0	1	662980			66476	12514	46856	46923	71714	71714					0.10422436476960684
RIPWQGLLL	9	Unmodified	_RIPWQGLLL_					0	0	0		ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3358154296875	2	548.337301	1094.66005	-1.2642	-0.00069323	-3.5048	-0.0019218	-4.769	-0.002615	548.3353500196921	43.555	1.0073	43.555	43.113	44.12	0					80	27	5	0	0	0	0.52323	1	4077	4077		57.811	3.035	1	7840100			66477	4050	46857	46924	71715	71715					0.11650605364911826
RIPWQGLLL	9	Unmodified	_RIPWQGLLL_					0	0	0		ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	ENSG00000124469|ENST00000244336|CEACAM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.335205078125	2	548.337301	1094.66005	-0.54546	-0.0002991	-4.135	-0.0022674	-4.6805	-0.0025665	548.3350153282292	43.616	0.97869	43.647	43.191	44.17	0.030827					84	26	5	0	0	0	0.67308	1	4037	4037		47.916	5.0513	1	8497200			66478	4050	46857	46924	71716	71716					0.11650605364911826
RIQAESENI	9	Unmodified	_RIQAESENI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.28125	2	530.275095	1058.53564	0.049176	2.6077E-05	0.045673	2.4219E-05	0.094849	5.0296E-05	530.2750344849765	40.419	1.2224	40.307	39.978	41.2	-0.11223					74	32	3	0	0	0	0.82115	1	3496	3496		37.812	0.30334	1	9148300			66479	18383	46858	46925	71717	71717					0.008710630869018132
RIQGELLPL	9	Unmodified	_RIQGELLPL_					0	0	0			REV__ENST00000493753.1_1_21:42769576-42771509:+|nuORF	REV__ENST00000493753.1_1_21:42769576-42771509:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8186645507812	2	519.818941	1037.62333	0.39079	0.00020314	-0.95648	-0.0004972	-0.56569	-0.00029406	519.8185167136494	71.654	3.022	71.366	70.459	73.481	-0.28858					180	76	4	0	0	0	0.39228	1	8647	8647		66.429	0	1	29892000	+		66480	27575	46859	46926	71718	71718					0.10602308748320866
RIQMDSMVI	9	Unmodified	_RIQMDSMVI_					0	0	0		ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM;EGFLAM|p.H193Y|1|0.4|ENSG00000164318|chr5:38370327-38370327|C/T|missense_variant	ENSG00000164318|ENST00000322350|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	MSMS	OPSCC_39_ClassI_Rep-1	1	546.7801513671875	2	546.780644	1091.54674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.216	1	31.216	30.716	31.716	0								0	0	0	0.10746	1	2065	2065		90.777	13.459	1				66481	7260	46860	46927	71719	71719					0.004624258651801938
RIQTFLLLD	9	Unmodified	_RIQTFLLLD_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8318481445312	2	559.832049	1117.64954	-0.1434	-8.0279E-05	-1.1214	-0.00062778	-1.2648	-0.00070805	559.831801937394	72.635	1.7155	72.635	71.869	73.585	0					107	43	4	0	0	0	0.31037	1	8872	8872		74.255	0	1	5374400			66482	4092	46861	46928	71720	71720					0.09542577919796713
RIQWKPKKLR	10	Unmodified	_RIQWKPKKLR_					0	0	0			REV__ENST00000223073.6_1_7:127979303-127979689:-|nuORF	REV__ENST00000223073.6_1_7:127979303-127979689:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2701721191406	3	451.626096	1351.85646	0.43391	0.00019597	-4.3736	-0.0019752	-3.9397	-0.0017793	451.6242925893853	46.825	0.48806	46.825	46.515	47.003	0					33	12	4	0	0	0	0.03519	1	4673	4673		14.694	1.7362	1	208820	+		66483	29363	46862	46929	71721	71721					0.19460410258625416
RIRFHTGL	8	Unmodified	_RIRFHTGL_					0	0	0		nc|ENSG00000070785|Q9NR50-3|EIF2B3;nc|ENSG00000070785|Q9NR50-2|EIF2B3;ENSG00000070785|ENST00000360403|EIF2B3	nc|ENSG00000070785|Q9NR50-3|EIF2B3	nc|ENSG00000070785|Q9NR50-3|EIF2B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2720947265625	2	500.295968	998.577383	-0.69488	-0.00034765	2.4755	0.0012385	1.7806	0.00089084	500.2979101598193	39.282	0.36126	39.117	38.829	39.19	-0.16459					12	9	2	0	0	0	0.027866	1	3322	3322		57.811	2.3071	1	74980			66484	1437	46863	46930	71722	71722					0.07803708356743755
RIRFHTGL	8	Unmodified	_RIRFHTGL_					0	0	0		nc|ENSG00000070785|Q9NR50-3|EIF2B3;nc|ENSG00000070785|Q9NR50-2|EIF2B3;ENSG00000070785|ENST00000360403|EIF2B3	nc|ENSG00000070785|Q9NR50-3|EIF2B3	nc|ENSG00000070785|Q9NR50-3|EIF2B3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	500.295968	998.577383	-0.76312	-0.00038179	-0.82944	-0.00041497	-1.5926	-0.00079675	500.2958402706165	39.308	0.35506	39.332	39.17	39.526	0.023727	0.12973	-0.0015649	NaN	57.811	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161260			66485	1437	46863	46930							0.07803708356743755
RIRFTLPP	8	Unmodified	_RIRFTLPP_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7694396972656	2	500.308544	998.602535	-0.70791	-0.00035417	-3.5601	-0.0017811	-4.268	-0.0021353	500.8080452604438	39.199	0.25604	39.034	38.934	39.19	-0.16459					9	6	2	0	0	0	0.027866	1	3299	3299		35.618	0	1	162060			66486	1401	46864	46931	71723	71723					0.10317763159321203
RIRGEEPAV	9	Unmodified	_RIRGEEPAV_					0	0	0		nc|ENSG00000117543|Q9H2P9-3|DPH5;nc|ENSG00000117543|Q9H2P9-2|DPH5;nc|ENSG00000117543|Q9H2P9-4|DPH5;ENSG00000117543|ENST00000370109|DPH5;nc|ENSG00000117543|Q9H2P9-5|DPH5	nc|ENSG00000117543|Q9H2P9-3|DPH5	nc|ENSG00000117543|Q9H2P9-3|DPH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7880859375	2	513.788173	1025.56179	-0.8679	-0.00044592	0.2983	0.00015326	-0.5696	-0.00029266	513.7882504811131	27.8	0.9779	27.8	27.471	28.449	0					60	24	3	0	0	0	0.59099	1	1556	1556		53.351	0.41475	1	2904500			66487	3639	46865	46932	71724	71724					0.05003377049024493
RIRHQRIH	8	Unmodified	_RIRHQRIH_					0	0	0		ENSG00000197385|ENST00000360311|ZNF860	ENSG00000197385|ENST00000360311|ZNF860	ENSG00000197385|ENST00000360311|ZNF860	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.3355712890625	2	558.33649	1114.65843	0.80496	0.00044944	-2.2285	-0.0012442	-1.4235	-0.00079481	558.3352968791023	19.581	0.79082	19.381	19.106	19.897	-0.2001					39	15	5	0	0	0	0.96719	1	424	424		42.474	4.6629	1	1523300			66488	9989	46866	46933	71725	71725					0.10568409119491662
RIRLTPPRE	9	Unmodified	_RIRLTPPRE_					0	0	0			REV__ENSG00000072832|ENST00000324989|CRMP1	REV__ENSG00000072832|ENST00000324989|CRMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.3455200195312	2	569.346189	1136.67783	-1.1575	-0.00065904	0.6358	0.00036199	-0.52174	-0.00029705	569.3465287626993	35.635	0.65099	35.679	35.42	36.071	0.04406					51	16	5	0	0	0	0.56934	1	2700	2700		54.776	1.4249	1	2042100	+		66489	20484	46867	46934	71726	71726					0.11495320619746963
RIRMQNDD	8	Unmodified	_RIRMQNDD_					0	0	0			REV__nc|ENSG00000048991|Q15032|R3HDM1	REV__nc|ENSG00000048991|Q15032|R3HDM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.30224609375	2	524.25364	1046.49273	0.14239	7.4647E-05	1.6706	0.00087581	1.813	0.00095046	524.2550047881842	52.491	0.43646	52.344	52.132	52.569	-0.14723					15	10	3	0	0	0	0.027866	1	5573	5573		47.916	0	1	125340	+		66490	20143	46868	46935	71727	71727					-0.028660302421712913
RIRPTAVTL	9	Unmodified	_RIRPTAVTL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8245849609375	2	513.824558	1025.63456	0.021992	1.13E-05	-0.32062	-0.00016474	-0.29863	-0.00015344	513.8245595828838	39.531	0.87872	39.531	39.183	40.062	0					70	24	4	0	0	0	0.67687	2	3411	3411;3424		47.657	7.298	1	12095000			66491	2158	46869	46936	71728;71729	71728					0.12277130842448969
RIRPTAVTL	9	Unmodified	_RIRPTAVTL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8248291015625	2	513.824558	1025.63456	-1.1869	-0.00060988	0.74861	0.00038465	-0.43833	-0.00022522	513.825017437267	39.844	1.2054	39.868	39.526	40.731	0.023727					88	33	5	0	0	0	0.72494	1	3407	3407		44.377	5.1244	1	11651000			66492	2158	46869	46936	71730	71730					0.12277130842448969
RIRRAGCV	8	Unmodified	_RIRRAGCV_					0	0	0			REV__ENST00000320895.9_1_5:1344528-1345152:-|nuORF	REV__ENST00000320895.9_1_5:1344528-1345152:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2613525390625	2	465.774345	929.534138	-0.56778	-0.00026446	-4.453	-0.0020741	-5.0208	-0.0023386	465.77211721696665	22.832	0.73822	22.832	22.385	23.123	0					27	15	3	0	0	0	0.027866	1	795	795		12.959	0	1	129360	+		66493	30338	46870	46937	71731	71731					0.06655195307814665
RIRRVLIVDWD	11	Unmodified	_RIRRVLIVDWD_					0	0	0		ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.9546813964844	3	480.952649	1439.83612	0.85107	0.00040932	3.675	0.0017675	4.5261	0.0021768	480.95442617559513	19.828	0.73318	19.628	19.255	19.988	-0.2001					37	14	4	0	0	0	1.0281	1	463	463		30.569	5.4429	1	544070			66494	2006	46871	46938	71732	71732					0.13379194808180728
RIRSILRS	8	Unmodified	_RIRSILRS_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8240051269531	2	500.82235	999.630147	-0.50003	-0.00025043	3.9108	0.0019586	3.4108	0.0017082	500.8241691086277	33.451	1.8159	33.457	33.117	34.933	0.0066261					106	45	4	0	0	0	0.93437	1	2410	2410		47.657	5.1829	1	2197800			66495	10221;10159	46872	46939	71733	71733					0.130316664195675
RISDVHFSV	9	Unmodified	_RISDVHFSV_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.28271484375	2	530.282723	1058.55089	-1.1054	-0.00058618	1.3982	0.00074145	0.29281	0.00015527	530.2833316272768	48.357	0.96727	48.357	48.037	49.005	0					93	27	4	0	0	0	0.28753	2	4924	4924;4936		77.318	11.514	1	6885200			66496	9268	46873	46940	71734;71735	71734					0.023959746747550525
RISDVHFSV	9	Unmodified	_RISDVHFSV_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.282958984375	2	530.282723	1058.55089	-0.83489	-0.00044273	1.1422	0.00060569	0.30732	0.00016297	530.283181562792	48.533	0.98378	48.38	48.057	49.041	-0.15277					95	27	4	0	0	0	0.22902	3	4940	4919;4928;4940		85.161	19.539	1	6370800			66497	9268	46873	46940	71736;71737;71738	71738					0.023959746747550525
RISDVHFSV	9	Unmodified	_RISDVHFSV_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2825927734375	2	530.282723	1058.55089	-0.49066	-0.00026019	0.72581	0.00038489	0.23516	0.0001247	530.2828975892907	48.216	1.009	48.283	47.97	48.979	0.066795					91	27	4	0	0	0	0.10174	2	4832	4832;4842		110.12	33.273	1	6683100			66498	9268	46873	46940	71739;71740	71739					0.023959746747550525
RISDVHFSV	9	Unmodified	_RISDVHFSV_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.282723	1058.55089	-0.80568	-0.00042724	0.25797	0.0001368	-0.54771	-0.00029044	530.2827775332901	48.254	0.99129	48.156	47.593	48.584	-0.097553	-0.12133	-2.0605E-05	NaN	110.12	48	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1514300			66499	9268	46873	46940							0.023959746747550525
RISDVHFSV	9	Unmodified	_RISDVHFSV_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.282723	1058.55089	-0.048062	-2.5486E-05	-0.52107	-0.00027631	-0.56913	-0.0003018	530.2823030677295	48.398	1.0298	48.212	47.596	48.626	-0.18684	-0.06619	-0.00084683	NaN	110.12	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1456700			66500	9268	46873	46940							0.023959746747550525
RISERLHLQ	9	Unmodified	_RISERLHLQ_					0	0	0		ENSG00000175213|ENST00000311764|ZNF408	ENSG00000175213|ENST00000311764|ZNF408	ENSG00000175213|ENST00000311764|ZNF408	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.3356323242188	2	576.335821	1150.65709	0.84298	0.00048584	-1.0009	-0.00057686	-0.15794	-9.1026E-05	576.33513747324	18.379	0.44362	18.223	18.002	18.445	-0.15637					23	8	4	0	0	0	0.31247	1	293	293		73.975	2.679	1	351050			66501	8539	46874	46941	71741	71741					0.08778730240078403
RISEVLQKL	9	Unmodified	_RISEVLQKL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3372192382812	2	543.337498	1084.66044	-0.98427	-0.00053479	0.18444	0.00010021	-0.79983	-0.00043458	543.3375877430747	48.614	1.6346	48.614	48.243	49.878	0					101	45	5	0	0	0	0.062622	1	4959	4959		124.08	14.602	1	9406200			66502	4972	46875	46942	71742	71742					0.12149980294066154
RISEVLQKL	9	Unmodified	_RISEVLQKL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3372192382812	2	543.337498	1084.66044	-1.0451	-0.00056785	0.26609	0.00014458	-0.77902	-0.00042327	543.337595664727	48.761	1.5232	48.608	48.329	49.852	-0.15276					106	41	5	0	0	0	0.015752	1	4976	4976		158.07	12.919	1	8387100			66503	4972	46875	46942	71743	71743					0.12149980294066154
RISEVLQKL	9	Unmodified	_RISEVLQKL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3374633789062	2	543.337498	1084.66044	-1.1006	-0.00059798	0.26419	0.00014354	-0.83638	-0.00045444	543.3376411108372	48.458	1.4951	48.525	48.265	49.76	0.066795					95	40	4	0	0	0	0.041068	2	4888	4868;4888		132.76	14.947	1	8938500			66504	4972	46875	46942	71744;71745	71745					0.12149980294066154
RISFPSIHPF	10	Unmodified	_RISFPSIHPF_					0	0	0			REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|63|3|anti-sense	REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|63|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.88800048828125	3	400.888986	1199.64513	0.68607	0.00027504	-3.9119	-0.0015682	-3.2258	-0.0012932	400.8873389849698	22.905	0.6909	22.719	22.46	23.151	-0.18539					35	14	3	0	0	0	1.0447	1	859	859		40.058	3.7405	1	601050	+		66505	37601	46876	46943	71746	71746					0.05329113496895843
RISKEPAI	8	Unmodified	_RISKEPAI_					0	0	0			REV__ENST00000317961.8_2_Y:21906580-21906733:-|nuORF	REV__ENST00000317961.8_2_Y:21906580-21906733:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2196044921875	2	457.276909	912.539266	-1.0663	-0.00048759	-2.6713	-0.0012215	-3.7376	-0.0017091	457.27527796580176	40.531	0.5202	40.301	39.93	40.45	-0.23021					18	13	2	0	0	0	0.027866	1	3456	3456		65.803	2.4969	1	377210	+		66506	30301	46877	46944	71747	71747					0.07949777651424483
RISKVPPTHA	10	Unmodified	_RISKVPPTHA_					0	0	0		ENST00000291270.8_1_19:46280598-46281766:-|nuORF;ENST00000600757.5_1_19:46278258-46281766:-|nuORF	ENST00000291270.8_1_19:46280598-46281766:-|nuORF	ENST00000291270.8_1_19:46280598-46281766:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.2250366210938	2	553.327465	1104.64038	-0.68299	-0.00037792	-0.42256	-0.00023382	-1.1056	-0.00061174	553.3270670400436	30.549	0.29344	30.371	30.203	30.497	-0.17818					12	6	2	0	0	0	0.03519	1	1966	1966		26.693	9.9879	1	62878			66507	11793	46878	46945	71748	71748					0.09224229354140334
RISNIPNLI	9	Unmodified	_RISNIPNLI_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.833984375	2	520.316566	1038.61858	-1.5402	-0.00080138	1.0592	0.0005511	-0.48101	-0.00025028	520.3168897479827	20.683	0.4804	20.683	20.468	20.949	0					22	9	3	0	0	0	0.02435	1	584	584		42.396	0	1	114170	+		66508	19302	46879	46946	71749	71749					0.10081424605550637
RISSRKTL	8	Unmodified	_RISSRKTL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2813720703125	2	480.801083	959.587613	0.81532	0.00039201	-0.97193	-0.00046731	-0.15661	-7.5298E-05	480.80050855690973	96.208	0.66739	96.071	95.767	96.435	-0.1367					20	15	2	0	0	0	0.027866	1	11848	11848		16.473	5.6076	1	79063			66509	1818;17643	46880	46947	71750	71750					0.10620271291338668
RISTRLPAN	9	Unmodified	_RISTRLPAN_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.3038330078125	2	514.30399	1026.59343	-1.5419	-0.000793	0.96623	0.00049693	-0.57567	-0.00029607	514.3044246796318	29.817	0.64924	29.817	29.447	30.096	0					47	15	4	0	0	0	0.72494	1	1855	1855		44.377	1.5129	1	1976600	+		66510	22174	46881	46948	71751	71751					0.0811936980298924
RISVIKSVF	9	Unmodified	_RISVIKSVF_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.8269653320312	2	524.829309	1047.64407	-0.67594	-0.00035475	-3.8331	-0.0020117	-4.509	-0.0023665	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	0.92825	1	12467	12467		30.504	1.3541	1	14120000			66511	8620	46882	46949	71752	71752					0.12214899127980061
RISWRRGH	8	Unmodified	_RISWRRGH_					0	0	0		ENSG00000121716|ENST00000609309|PILRB;ENST00000474013.1_1_7:99971734-99973868:+|nuORF;nc|ENSG00000085514|Q9UKJ1-4|PILRA;ENST00000484934.1_1_7:99971228-99972163:+|nuORF;nc|ENSG00000085514|Q9UKJ1-2|PILRA;ENSG00000085514|ENST00000198536|PILRA;nc|ENSG00000085514|Q9UKJ1-3|PILRA	ENSG00000121716|ENST00000609309|PILRB;nc|ENSG00000085514|Q9UKJ1-3|PILRA	nc|ENSG00000085514|Q9UKJ1-3|PILRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2887573242188	2	534.302116	1066.58968	-0.24734	-0.00013215	-1.1606	-0.00062012	-1.408	-0.00075228	534.3014153014652	18.516	0.29605	18.384	18.203	18.499	-0.13148					10	5	3	0	0	0	0.027866	1	272	272		37.159	6.6555	1	20424			66512	3882;18101	46883	46950	71753	71753					0.05904744819804364
RISYQPENI	9	Unmodified	_RISYQPENI_					0	0	0		ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5	ENSG00000132256|ENST00000380034|TRIM5	ENSG00000132256|ENST00000380034|TRIM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.2968139648438	2	560.293288	1118.57202	0.44887	0.0002515	3.3826	0.0018953	3.8315	0.0021468	560.2947747730213	72.498	0.73427	72.508	72.21	72.944	0.0097733					57	17	5	0	0	0	0.51687	1	8740	8740		58.23	4.8785	1	2048300			66513	4584	46884	46951	71754	71754					0.017479399836020093
RITELMQV	8	Unmodified	_RITELMQV_					0	0	0		ENSG00000117528|ENST00000370214|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	ENSG00000117528|ENST00000370214|ABCD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2772521972656	2	495.276052	988.537551	-0.76342	-0.0003781	4.0627	0.0020121	3.2993	0.001634	495.277975893096	20.459	0.57648	20.459	20.176	20.753	0					32	11	4	0	0	0	0.77775	1	555	555		60.972	4.2509	1	373390			66514	3638	46885	46952	71755	71755					0.042824005711622704
RITIGLIFV	9	Unmodified	_RITIGLIFV_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3140869140625	2	516.334227	1030.6539	0.28941	0.00014943	2.5138	0.001298	2.8033	0.0014474	516.3378398373901	97.903	0.59207	97.913	97.64	98.232	0.010231					21	13	3	0	0	0	0.024412	1	12477	12477		31.955	14.59	1	124010	+		66515	22220	46886	46953	71756	71756					0.13980087133381858
RITKRLRK	8	Unmodified	_RITKRLRK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.8671875	2	535.867092	1069.71963	3.9053	0.0020927	-3.7737	-0.0020222	0.13161	7.0524E-05	535.8649552614899	17.597	0.38977	17.347	17.179	17.569	-0.25049					16	7	3	0	0	0	1.0574	1	180	180		17.365	2.5001	1	113630			66516	10614	46887	46954	71757	71757					0.1875592109893205
RITLLDVVF	9	Unmodified	_RITLLDVVF_					0	0	0		nc|ENSG00000172752|A8TX70|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3273315429688	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.87448	1	12693	12693		34.173	1.3601	1	22988000			66517	8301	46888	46955	71758	71758					0.10939479408125408
RITLLDVVF	9	Unmodified	_RITLLDVVF_					0	0	0		nc|ENSG00000172752|A8TX70|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70|COL6A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3272705078125	2	538.329142	1074.64373	0.30756	0.00016557	-4.081	-0.0021969	-3.7735	-0.0020314	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.87448	1	12340	12340		34.173	0.25091	1	21168000			66518	8301	46888	46955	71759	71759					0.10939479408125408
RITPFLPNW	9	Unmodified	_RITPFLPNW_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.8212280273438	2	572.319109	1142.62366	0.50929	0.00029148	1.8243	0.0010441	2.3336	0.0013356	572.3186749814271	77.194	0.75459	76.929	76.555	77.31	-0.26506					36	18	3	0	0	0	0.37611	2	9173	9173;9182		67.494	26.067	1	480060			66519	7568	46889	46956	71760;71761	71760					0.05805728468158122
RITPFLPNW	9	Unmodified	_RITPFLPNW_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.3208618164062	2	572.319109	1142.62366	0.68404	0.00039149	-0.8238	-0.00047147	-0.13975	-7.9984E-05	572.3186077391873	77.163	0.69685	76.911	76.614	77.31	-0.25163					28	17	2	0	0	0	0.45795	1	9192	9192		62.107	1.9892	1	500460			66520	7568	46889	46956	71762	71762					0.05805728468158122
RITPFLPNW	9	Unmodified	_RITPFLPNW_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.3203125	2	572.319109	1142.62366	-0.42948	-0.0002458	4.0531	0.0023197	3.6236	0.0020739	572.319145605198	77.018	0.60886	76.851	76.483	77.092	-0.16675					53	14	5	0	0	0	0.34489	1	9144	9144		69.628	10.846	1	1022500			66521	7568	46889	46956	71763	71763					0.05805728468158122
RITPFLPNW	9	Unmodified	_RITPFLPNW_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	572.319109	1142.62366	-0.46732	-0.00026746	8.5307	0.0048823	8.0634	0.0046148	572.3239009070014	77.13	0.29643	77.13	76.998	77.295	0	0.062827	0.0016193	NaN	67.494	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186170			66522	7568	46889	46956							0.05805728468158122
RITPFLPNW	9	Unmodified	_RITPFLPNW_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	572.319109	1142.62366	-0.58505	-0.00033484	8.9871	0.0051435	8.402	0.0048086	572.3240554361814	77.128	0.29846	77.142	77.062	77.361	0.013504	0.074779	0.0021417	NaN	67.494	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166880			66523	7568	46889	46956							0.05805728468158122
RITPKTQGT	9	Unmodified	_RITPKTQGT_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.29034423828125	2	501.290548	1000.56654	0.66254	0.00033212	-0.80898	-0.00040553	-0.14644	-7.3409E-05	501.2899933789471	88.245	1.3927	88.263	87.909	89.302	0.018555					71	32	4	0	0	0	0.6504	1	11029	11029		49.442	5.0644	1	968330			66524	1277	46890	46957	71764	71764					0.06628261191815454
RITPTRLL	8	Unmodified	_RITPTRLL_					0	0	0		nc|ENSG00000136449|Q8TBZ2|MYCBPAP;ENSG00000136449|ENST00000323776|MYCBPAP;ENST00000470609.5_1_17:48585906-48599496:+|nuORF	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	nc|ENSG00000136449|Q8TBZ2|MYCBPAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.283447265625	2	485.313826	968.613099	-0.47411	-0.00023009	3.2996	0.0016013	2.8255	0.0013712	485.31541244970595	21.612	0.27984	21.522	21.403	21.683	-0.090092					9	5	2	0	0	0	0.027866	1	657	657		27.882	4.8398	1	37635			66525	5017	46891	46958	71765	71765					0.12753745813745354
RITRKSCNL	9	Unmodified	_RITRKSCNL_					0	0	0		ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	ENSG00000142677|ENST00000270800|IL22RA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.8111572265625	2	545.811125	1089.6077	-0.96752	-0.00052808	0.29191	0.00015933	-0.67561	-0.00036876	545.8112395180657	91.515	1.3143	91.503	91.156	92.471	-0.012383					82	31	5	0	0	0	0.6504	1	11539	11539		49.442	1.7842	1	4054900			66526	5583	46892	46959	71766	71766					0.06647698959636728
RITSARKR	8	Unmodified	_RITSARKR_					0	0	0		ENSG00000177679|ENST00000611745|SRRM3;ENSG00000139767|ENST00000267260|SRRM4	ENSG00000177679|ENST00000611745|SRRM3;ENSG00000139767|ENST00000267260|SRRM4	ENSG00000177679|ENST00000611745|SRRM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.301025390625	2	494.312149	986.609745	0.87922	0.00043461	3.7783	0.0018677	4.6576	0.0023023	494.31447383645485	96.47	0.21216	96.347	96.227	96.44	-0.12305					6	4	2	0	0	0	0.027866	1	11937	11937		34.173	20.397	1	50205			66527	8762;5366	46893	46960	71767	71767					0.11590495759753594
RIVAHAVEV	9	Unmodified	_RIVAHAVEV_					0	0	0		ENST00000531401.5_1_11:64850926-64851618:-|nuORF;ENSG00000146670|ENST00000275517|CDCA5	ENST00000531401.5_1_11:64850926-64851618:-|nuORF	ENST00000531401.5_1_11:64850926-64851618:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2951965332031	2	497.295633	992.576714	-0.40892	-0.00020335	-0.073578	-3.659E-05	-0.48249	-0.00023994	497.2954476661093	34.593	0.66033	34.588	34.298	34.958	-0.0045624					51	16	5	0	0	0	0.62163	1	2578	2578		51.335	14.176	1	1751300			66528	5899	46894	46961	71768	71768					0.08012868917035121
RIVDLLTGE	9	Unmodified	_RIVDLLTGE_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.268310546875	2	508.292756	1014.57096	-0.98934	-0.00050288	1.6286	0.00082783	0.63931	0.00032495	508.295843286978	61.98	0.42653	61.802	61.615	62.042	-0.17782					28	10	4	0	0	0	0.024541	1	6992	6992		6.3127	0	1	222550	+		66529	23406	46895	46962	71769	71769					0.06425725614712974
RIVDLLTGE	9	Unmodified	_RIVDLLTGE_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.292756	1014.57096	0.3025	0.00015376	-1.1576	-0.00058841	-0.85512	-0.00043465	508.29195617652726	61.703	0.46081	61.476	61.189	61.65	-0.22663	-0.15199	-0.00036906	NaN	19.997	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1164600	+		66530	23406	46895	46962							0.06425725614712974
RIVDLLTGE	9	Unmodified	_RIVDLLTGE_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.292756	1014.57096	-0.25878	-0.00013154	-0.79764	-0.00040544	-1.0564	-0.00053697	508.7927656720937	62.031	0.35141	61.774	61.706	62.058	-0.25725	0.14559	-3.1008E-06	NaN	19.997	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315270	+		66531	23406	46895	46962							0.06425725614712974
RIVEPYVTW	9	Unmodified	_RIVEPYVTW_					0	0	0		nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	nc|ENSG00000146223|Q6DKI1-2|RPL7L1	nc|ENSG00000146223|Q6DKI1-2|RPL7L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.8171997070312	2	581.816399	1161.61824	-0.58041	-0.00033769	0.35752	0.00020801	-0.22289	-0.00012968	581.8165300602325	65.16	0.93491	64.926	64.529	65.464	-0.2345					61	22	4	0	0	0	0.14024	2	7431	7431;7443		101.6	46.097	1	3319500			66532	5865	46896	46963	71770;71771	71770					0.04390004885704002
RIVEPYVTW	9	Unmodified	_RIVEPYVTW_					0	0	0		nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	nc|ENSG00000146223|Q6DKI1-2|RPL7L1	nc|ENSG00000146223|Q6DKI1-2|RPL7L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.8165893554688	2	581.816399	1161.61824	-1.959	-0.0011398	1.6705	0.00097192	-0.28855	-0.00016788	581.8172877915516	65.164	0.80653	64.961	64.5	65.307	-0.20254					57	19	4	0	0	0	0.12914	1	7436	7436		104.06	38.254	1	3675200			66533	5865	46896	46963	71772	71772					0.04390004885704002
RIVEPYVTW	9	Unmodified	_RIVEPYVTW_					0	0	0		nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	nc|ENSG00000146223|Q6DKI1-2|RPL7L1	nc|ENSG00000146223|Q6DKI1-2|RPL7L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.81640625	2	581.816399	1161.61824	-1.0132	-0.00058947	0.85405	0.0004969	-0.15911	-9.2572E-05	581.8167648346235	65.19	1.0141	64.936	64.544	65.558	-0.25409					63	24	4	0	0	0	0.17845	2	7427	7427;7439		93.143	29.837	1	3350300			66534	5865	46896	46963	71773;71774	71773					0.04390004885704002
RIVLARQAL	9	Unmodified	_RIVLARQAL_					0	0	0		chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22	chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22	chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.33984375	2	520.340375	1038.6662	-0.84823	-0.00044137	0.26977	0.00014037	-0.57846	-0.000301	520.340348831719	23.013	1.1625	23.087	22.791	23.954	0.073954					64	26	4	0	0	0	0.98697	1	836	836		23.042	0	1	869850			66535	378	46897	46964	71775	71775					0.14841123596397665
RIVVNIDLN	9	Unmodified	_RIVVNIDLN_					0	0	0			REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.3154296875	2	528.314023	1054.61349	0.6396	0.00033791	0.17025	8.9944E-05	0.80984	0.00042785	528.3142680105974	97.405	1.0351	97.268	96.746	97.781	-0.1367					49	22	3	0	0	0	0.83071	2	12077	12052;12077		37.159	5.2042	1	177890	+		66536	36808	46898	46965	71776;71777	71777					0.08837120742964544
RIYILPQP	8	Unmodified	_RIYILPQP_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.2720947265625	2	500.302927	998.591301	-0.59227	-0.00029631	4.0958	0.0020492	3.5036	0.0017528	500.8068327277168	39.37	0.37611	39.147	38.926	39.302	-0.22311					19	9	3	0	0	0	0.027866	1	3339	3339		42.474	0	1	94835	+		66537	34101	46899	46966	71778	71778					0.09194941065175044
RIYKDMFL	8	Unmodified	_RIYKDMFL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.299072265625	2	543.294245	1084.57394	-0.073617	-3.9996E-05	-0.55101	-0.00029936	-0.62463	-0.00033936	543.2939208901009	72.42	0.48298	72.429	72.169	72.652	0.0097733					19	11	2	0	0	0	0.87148	1	8735	8735		53.351	2.016	1	2522100			66538	9997	46900	46967	71779	71779					0.035032774678711576
RKAEAAAL	8	Unmodified	_RKAEAAAL_					0	0	0			REV__nc|ENSG00000078814|A7E2Y1|MYH7B	REV__nc|ENSG00000078814|A7E2Y1|MYH7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.2481384277344	2	415.248152	828.481751	-0.36506	-0.00015159	0.1891	7.8525E-05	-0.17596	-7.3068E-05	415.2482658171454	35.798	1.589	35.842	35.497	37.086	0.044056					107	42	5	0	0	0	0.71063	1	2754	2754		66.429	5.4573	1	17837000	+		66539	20622	46901	46968	71780	71780					0.06064935445840547
RKAKLYPK	8	Unmodified	_RKAKLYPK_					0	0	0			REV__ENSG00000118946|ENST00000377918|PCDH17	REV__ENSG00000118946|ENST00000377918|PCDH17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.32421875	2	502.324194	1002.63383	3.5057	0.001761	-3.584	-0.0018003	-0.0783	-3.9332E-05	502.3222329228288	17.993	0.7464	17.751	17.528	18.274	-0.24256					35	14	4	0	0	0	0.74904	1	220	220		63.306	5.495	1	474290	+		66540	22430	46902	46969	71781	71781					0.13262336193406554
RKALMPPVK	9	Unmodified	_RKALMPPVK_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3265380859375	2	520.325879	1038.63721	-0.58236	-0.00030302	-3.4905	-0.0018162	-4.0728	-0.0021192	520.3239218142604	51.887	1.1931	51.74	51.336	52.53	-0.14735					68	32	3	0	0	0	0.024506	1	5513	5513		23.042	1.0826	1	969290			66541	7398	46903	46970	71782	71782					0.11943262975773905
RKALMPPVK	9	Unmodified	_RKALMPPVK_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.325879	1038.63721	-1.1963	-0.00062245	-2.9046	-0.0015113	-4.1008	-0.0021338	520.324241252398	51.639	1.3292	51.726	51.339	52.669	0.087006	-0.0024537	0.00040215	NaN	29.15	74	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	938210			66542	7398	46903	46970							0.11943262975773905
RKAPTMQTGE	10	Unmodified	_RKAPTMQTGE_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.7830810546875	2	559.784773	1117.55499	-0.47764	-0.00026738	-3.1749	-0.0017773	-3.6526	-0.0020446	559.7829991172084	31.054	1.0835	30.813	30.248	31.332	-0.24109					89	26	4	0	0	0	0.71272	1	2016	2016		66.429	0	1	7647000	+		66543	20583	46904	46971	71783	71783					0.0009169610616481805
RKCFTKEI	8	Unmodified	_RKCFTKEI_					0	0	0			REV__ENSG00000134160|ENST00000256552|TRPM1	REV__ENSG00000134160|ENST00000256552|TRPM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.80322265625	2	512.784044	1023.55354	0.60179	0.00030859	3.1095	0.0015945	3.7113	0.0019031	512.7855304474037	18.725	0.34644	18.569	18.396	18.742	-0.15637					11	6	2	0	0	0	0.027866	1	342	342		71.296	27.179	1	59020	+		66544	23424	46905	46972	71784	71784					0.042701068080759796
RKDLDLAKVGY	11	Unmodified	_RKDLDLAKVGY_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000413704.5_1_3:9487316-9517772:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.578369140625	3	426.578588	1276.71394	-0.19234	-8.2048E-05	1.2668	0.0005404	1.0745	0.00045835	426.5790830656187	36.148	1.5952	35.943	35.544	37.14	-0.20518					119	42	4	0	0	0	1.0075	1	2802	2802		31.068	0	1	5660500			66545	18490	46906	46973	71785	71785					0.08664733005934977
RKEKELKLK	9	Unmodified	_RKEKELKLK_					0	0	0			REV__ENSG00000083635|ENST00000379161|NUFIP1	REV__ENSG00000083635|ENST00000379161|NUFIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.6958618164062	2	586.379697	1170.74484	3.9535	0.0023183	-3.6734	-0.002154	0.28012	0.00016426	586.3774264125166	17.548	0.29302	17.297	17.128	17.421	-0.25049					7	5	2	0	0	0	0.024541	1	157	157		19.997	7.0376	1	30672	+		66546	20718	46907	46974	71786	71786					0.1662993111083324
RKEKQKLIR	9	Unmodified	_RKEKQKLIR_					0	0	0		ENST00000369763.4_1_1:111490966-111491014:-|nuORF	ENST00000369763.4_1_1:111490966-111491014:-|nuORF	ENST00000369763.4_1_1:111490966-111491014:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.262935	1197.76697	0.23767	9.5129E-05	3.8713	0.0015495	4.109	0.0016447	400.2642023198738	22.086	0.23959	22.01	21.89	22.13	-0.075296					8	4	3	0	0	0	0.024344	1	739	739		54.776	3.5836	1	13751			66547	12937	46908	46975	71787	71787					0.17600155579270904
RKELRPSA	8	Unmodified	_RKELRPSA_					0	0	0			REV__ENSG00000131746|ENST00000254051|TNS4	REV__ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7853698730469	2	478.785433	955.556313	-0.92729	-0.00044397	0.92785	0.00044424	0.00055528	2.6586E-07	478.78580113422663	91.323	1.428	91.174	90.813	92.241	-0.1487					71	33	4	0	0	0	0.96769	4	11182	11171;11182;11195;11218		42.396	8.2236	1	2668700	+		66548	23230	46909	46976	71788;71789;71790;71791	71789					0.07675698257230579
RKELRPSA	8	Unmodified	_RKELRPSA_					0	0	0			REV__ENSG00000131746|ENST00000254051|TNS4	REV__ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.785400390625	2	478.785433	955.556313	-0.51861	-0.0002483	0.51423	0.0002462	-0.0043797	-2.097E-06	478.78559745514167	91.303	1.5076	91.18	90.914	92.422	-0.12341					73	35	4	0	0	0	0.96769	3	11201	11191;11201;11226		42.396	11.892	1	2419900	+		66549	23230	46909	46976	71792;71793;71794	71793					0.07675698257230579
RKELRPSA	8	Unmodified	_RKELRPSA_					0	0	0			REV__ENSG00000131746|ENST00000254051|TNS4	REV__ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7852783203125	2	478.785433	955.556313	0.41235	0.00019743	-0.4463	-0.00021368	-0.033952	-1.6256E-05	478.78517028501756	91.36	2.0991	91.221	90.863	92.962	-0.13941					79	49	4	0	0	0	0.96769	2	11205	11180;11205		42.396	11.892	1	2115600	+		66550	23230	46909	46976	71795;71796	71796					0.07675698257230579
RKERVASN	8	Unmodified	_RKERVASN_					0	0	0		ENST00000586286.5_1_19:44669801-44669849:+|nuORF	ENST00000586286.5_1_19:44669801-44669849:+|nuORF	ENST00000586286.5_1_19:44669801-44669849:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2846984863281	2	480.27269	958.530826	-0.24472	-0.00011753	3.0072	0.0014443	2.7625	0.0013268	480.27453120691354	75.989	1.2786	75.744	75.477	76.756	-0.24455					106	32	5	0	0	0	0.027866	1	9279	9279		39.253	10.083	1	12459000			66551	17239	46910	46977	71797	71797					0.049902237348078415
RKERVASN	8	Unmodified	_RKERVASN_					0	0	0		ENST00000586286.5_1_19:44669801-44669849:+|nuORF	ENST00000586286.5_1_19:44669801-44669849:+|nuORF	ENST00000586286.5_1_19:44669801-44669849:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2842102050781	2	480.27269	958.530826	-0.22894	-0.00010995	2.8906	0.0013883	2.6616	0.0012783	480.274096512382	75.961	1.3364	75.702	75.398	76.734	-0.25865					88	32	4	0	0	0	0.027866	1	8975	8975		37.812	17.815	1	3558300			66552	17239	46910	46977	71798	71798					0.049902237348078415
RKEVRAGLS	9	Unmodified	_RKEVRAGLS_					0	0	0			REV__CFAP46|p.Q2139K|1|0.22|ENSG00000171811|chr10:132846080-132846080|G/T|missense_variant	REV__CFAP46|p.Q2139K|1|0.22|ENSG00000171811|chr10:132846080-132846080|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.3044738769531	2	508.30399	1014.59343	1.0561	0.00053682	1.2129	0.00061654	2.269	0.0011534	508.3044793341435	98.299	0.80177	98.175	97.947	98.749	-0.12413					35	18	2	0	0	0	0.87448	1	12224	12224		34.173	0	1	556590	+		66553	19299	46911	46978	71799	71799					0.08671369803005291
RKFFVAKS	8	Unmodified	_RKFFVAKS_					0	0	0			REV__ENST00000397747.4_1_9:5557645-5569982:+|nuORF	REV__ENST00000397747.4_1_9:5557645-5569982:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2713623046875	2	491.795269	981.575986	-0.60005	-0.0002951	-1.7336	-0.00085256	-2.3336	-0.0011477	491.7936614321454	62.817	0.59459	62.817	62.531	63.126	0					21	14	2	0	0	0	0.027866	1	7368	7368		24.203	0	1	394210	+		66554	31783	46912	46979	71800	71800					0.08446074267999393
RKFINRSV	8	Unmodified	_RKFINRSV_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.32470703125	2	510.309075	1018.6036	-1.1666	-0.00059531	3.6703	0.001873	2.5038	0.0012777	510.31077991607924	79.807	0.67198	79.635	79.15	79.822	-0.17226					22	15	2	0	0	0	0.027866	1	9823	9823		40.573	7.7602	1	62522	+		66555	25558	46913	46980	71801	71801					0.09503977528231644
RKFINRSV	8	Unmodified	_RKFINRSV_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.309075	1018.6036	-0.37791	-0.00019285	3.0614	0.0015623	2.6835	0.0013694	510.310759571581	79.395	0.49695	79.414	79.314	79.811	0.018677	-0.11029	-0.00022518	NaN	40.573	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61476	+		66556	25558	46913	46980							0.09503977528231644
RKFKESLR	8	Unmodified	_RKFKESLR_					0	0	0		nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2	nc|ENSG00000075043|O43526-4|KCNQ2	nc|ENSG00000075043|O43526-4|KCNQ2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.3214111328125	2	532.322183	1062.62981	-1.26	-0.0006707	0.91048	0.00048467	-0.34948	-0.00018603	532.3224984238858	30.15	0.67023	29.972	29.74	30.41	-0.17818					38	15	4	0	0	0	0.91956	1	1896	1896		49.442	5.3247	1	954040			66557	1541	46914	46981	71802	71802					0.101002466996988
RKFLKHHL	8	Unmodified	_RKFLKHHL_					0	0	0		ENSG00000100221|ENST00000683374|JOSD1	ENSG00000100221|ENST00000683374|JOSD1	ENSG00000100221|ENST00000683374|JOSD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8326416015625	2	539.83526	1077.65597	0.17235	9.3039E-05	-4.3935	-0.0023718	-4.2212	-0.0022788	539.8327586214007	19.021	0.54469	18.86	18.639	19.183	-0.16079					23	10	3	0	0	0	0.85409	1	373	373		54.765	0	1	424610			66558	2153	46915	46982	71803	71803					0.12024560661848227
RKFLSMVL	8	Unmodified	_RKFLSMVL_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.29742431640625	2	497.29933	992.584108	0.5982	0.00029748	-4.206	-0.0020916	-3.6078	-0.0017942	497.29713382221155	69.867	2.3595	69.574	68.634	70.993	-0.29291					150	63	4	0	0	0	0.87148	1	8523	8523		53.351	14.099	1	3690300	+		66559	20825	46916	46983	71804	71804					0.08751885193123599
RKFYKMKTAY	10	Oxidation (M)	_RKFYKM(Oxidation (M))KTAY_		RKFYKM(1)KTAY		RKFYKM(45)KTAY	0	0	1		ENST00000399720.4_1_4:49489055-49490575:-|nuORF	ENST00000399720.4_1_4:49489055-49490575:-|nuORF	ENST00000399720.4_1_4:49489055-49490575:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2454833984375	3	451.244552	1350.71183	-0.22454	-0.00010132	1.4133	0.00063774	1.1888	0.00053642	451.24518709553644	46.005	1.0401	45.744	45.383	46.423	-0.26118					97	27	5	0	0	0	1.0074	1	4409	4409		45.022	6.3081	1	11241000			66560	13652	46917	46984	71805	71805		495			0.050499809965003806
RKGLKKMCV	9	Unmodified	_RKGLKKMCV_					0	0	0			REV__ENST00000540925.5_1_11:113745412-113745487:-|nuORF	REV__ENST00000540925.5_1_11:113745412-113745487:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8170166015625	2	531.817364	1061.62018	-0.35028	-0.00018629	-0.73195	-0.00038927	-1.0822	-0.00057555	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.97516	1	10846	10846		25.45	1.2474	1	5249700	+		66561	34761	46918	46985	71806	71806					0.09183019098304612
RKGLPRRPRGS	11	Unmodified	_RKGLPRRPRGS_					0	0	0			REV__ENST00000531339.5_1_11:65414854-65417043:+|nuORF	REV__ENST00000531339.5_1_11:65414854-65417043:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2644958496094	3	427.26545	1278.77452	0.50024	0.00021373	-2.9116	-0.001244	-2.4113	-0.0010303	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.0621	1	5855	5855		21.78	2.5177	1	61030000	+		66562	34553	46919	46986	71807	71807					0.14628307899556603
RKHKADTEEK	10	Unmodified	_RKHKADTEEK_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.5596923828125	3	414.558076	1240.6524	-0.54448	-0.00022572	3.4738	0.0014401	2.9294	0.0012144	414.55950089979723	26.527	1.1902	26.363	26.069	27.259	-0.16331					82	29	4	0	0	0	0.78438	1	1378	1378		61.691	1.573	1	6235000			66563	9561	46920	46987	71808	71808					0.04169801306647969
RKHKKKHMRWR	11	Unmodified	_RKHKKKHMRWR_					0	0	0		ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.319091796875	3	530.9844	1589.93137	-0.038262	-2.0316E-05	3.2119	0.0017055	3.1737	0.0016852	530.9849186522008	104.1	1.5237	104.1	103.14	104.67	-0.0032196					78	36	4	0	0	0	1.1077	2	13266	13266;13280		9.2118	5.8031	1	134220			66564	10451	46921	46988	71809;71810	71809					0.1600026951819018
RKHKKKHMRWR	11	Unmodified	_RKHKKKHMRWR_					0	0	0		ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2601928710938	3	530.9844	1589.93137	0.2944	0.00015632	0.58811	0.00031228	0.88251	0.0004686	531.318955617992	104.18	1.1095	104.02	103.44	104.55	-0.16791					40	28	2	0	0	0	0.024886	1	12930	12930		10.104	0.45776	1	93002			66565	10451	46921	46988	71811	71811					0.1600026951819018
RKHLVQVK	8	Unmodified	_RKHLVQVK_					0	0	0			REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF	REV__ENST00000360822.7_1_9:123151210-123151465:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.32696533203125	2	504.327268	1006.63998	3.3555	0.0016923	-3.9948	-0.0020147	-0.63936	-0.00032245	504.3253087047669	17.771	1.1275	17.771	17.498	18.626	0					60	22	5	0	0	0	0.68535	1	215	215		68.485	12.98	1	3845600	+		66566	30921	46922	46989	71812	71812					0.13692854424937195
RKIEDLVL	8	Unmodified	_RKIEDLVL_					0	0	0			REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	REV__MGAT4B|p.E77Gfs*16|1|0.2|ENSG00000161013|chr5:179801834-179801837|CTTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.30572509765625	2	493.305667	984.596781	0.2699	0.00013314	-0.74403	-0.00036703	-0.47412	-0.00023389	493.30526676310683	59.031	0.87862	59.116	58.813	59.692	0.085686					71	23	4	0	0	0	0.74904	1	6645	6645		63.306	4.5243	1	8727300	+		66567	25369	46923	46990	71813	71813					0.10386619857001733
RKILARAR	8	Unmodified	_RKILARAR_					0	0	0		ENST00000511502.5_1_1:1563563-1565907:+|nuORF;ENST00000506488.5_1_1:1562112-1565907:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2	ENST00000511502.5_1_1:1563563-1565907:+|nuORF	ENST00000511502.5_1_1:1563563-1565907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.79571533203125	2	492.332885	982.651216	-1.3389	-0.0006592	3.2863	0.001618	1.9474	0.00095875	492.33440568049934	48.699	0.40635	48.598	48.358	48.765	-0.1008					15	10	2	0	0	0	0.027866	1	4855	4855		37.159	0	1	157400			66568	10011	46924	46991	71814	71814					0.1591967651906998
RKILSRLFRVF	11	Unmodified	_RKILSRLFRVF_					0	0	0		ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.9744873046875	3	478.973384	1433.89832	-0.80526	-0.0003857	3.2359	0.0015499	2.4307	0.0011642	478.97482996440084	44.151	1.3024	44.006	43.639	44.942	-0.14471					92	37	5	0	0	0	1.096	1	4175	4175		12.433	2.7867	1	2667400			66569	8240	46925	46992	71815	71815					0.19872965947115517
RKILSRLFRVF	11	Unmodified	_RKILSRLFRVF_					0	0	0		ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.97479248046875	3	478.973384	1433.89832	-0.21239	-0.00010173	2.745	0.0013148	2.5326	0.0012131	478.9745728763623	44.001	1.0104	44.038	43.67	44.681	0.0369					86	28	4	0	0	0	1.112	1	4112	4112		8.0344	0.69301	1	2734500			66570	8240	46925	46992	71816	71816					0.19872965947115517
RKILSRLFRVF	11	Unmodified	_RKILSRLFRVF_					0	0	0		ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	ENSG00000172081|ENST00000357066|MOB3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	478.973384	1433.89832	-0.41918	-0.00020078	2.731	0.0013081	2.3118	0.0011073	478.9745789538285	43.951	1.0081	43.951	43.511	44.519	0	-0.047449	-0.00020769	NaN	12.433	84	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2540500			66571	8240	46925	46992							0.19872965947115517
RKIRIGGSR	9	Unmodified	_RKIRIGGSR_					0	0	0		ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.8123168945312	2	521.833249	1041.65194	1.7114	0.00089309	0.47853	0.00024972	2.19	0.0011428	521.8333336878202	23.293	0.351	23.101	22.897	23.248	-0.19117					16	7	3	0	0	0	0.024511	1	859	859		13.454	0	1	143220			66572	5735	46926	46993	71817	71817					0.13278471168109718
RKIWNAVAPIA	11	Unmodified	_RKIWNAVAPIA_					0	0	0			REV__ENSG00000163106|ENST00000295256|HPGDS	REV__ENSG00000163106|ENST00000295256|HPGDS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8701782226562	2	619.87204	1237.72953	-0.39228	-0.00024317	-3.8743	-0.0024016	-4.2666	-0.0026447	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	0.98218	1	12063	12063		40.778	1.972	1	4658300	+		66573	25533	46927	46994	71818	71818					0.1201706431365892
RKKGRAKR	8	Unmodified	_RKKGRAKR_					0	0	0			REV__ENSG00000128272|ENST00000674920|ATF4	REV__ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2879638671875	2	500.335959	998.657364	-0.32644	-0.00016333	2.0587	0.0010301	1.7323	0.00086672	500.3368822747512	23.896	0.38558	23.896	23.651	24.036	0					15	8	3	0	0	0	0.027866	1	1003	1003		17.365	0	1	89370	+		66574	22973	46928	46995	71819	71819					0.1579819475059594
RKKGRAKR	8	Unmodified	_RKKGRAKR_					0	0	0			REV__ENSG00000128272|ENST00000674920|ATF4	REV__ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.2878723144531	2	500.335959	998.657364	-0.88241	-0.0004415	2.7011	0.0013514	1.8186	0.00090993	500.33715253357127	23.894	0.3442	23.847	23.656	24	-0.047148					12	7	2	0	0	0	0.027866	1	979	979		33.516	3.0119	1	65292	+		66575	22973	46928	46995	71820	71820					0.1579819475059594
RKKIGKLLY	9	Unmodified	_RKKIGKLLY_					0	0	0		DNAH11|p.L441Ifs*25|1|0.16|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant	DNAH11|p.L441Ifs*25|1|0.16|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant	DNAH11|p.L441Ifs*25|1|0.16|ENSG00000105877|chr7:21570187-21570188|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8154907226562	2	559.874051	1117.73355	-0.37665	-0.00021088	1.5994	0.00089546	1.2227	0.00068458	559.8748172476095	80.878	0.24273	80.732	80.612	80.855	-0.146					8	5	2	0	0	0	0.024541	1	9702	9702		18.324	10.52	1	36522			66576	650	46929	46996	71821	71821					0.17939153807401453
RKKKLVQLEYY	11	Unmodified	_RKKKLVQLEYY_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.79803466796875	3	489.960921	1466.86093	1.034	0.00050661	-2.7091	-0.0013274	-1.6751	-0.00082076	489.96008416909706	19.762	0.19735	19.562	19.455	19.653	-0.2001					5	3	2	0	0	0	0.024727	1	454	454		23.378	6.2112	1	10265	+		66577	27815	46930	46997	71822	71822					0.14617829890903522
RKKLISPE	8	Unmodified	_RKKLISPE_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7768859863281	2	485.805834	969.597115	-1.4487	-0.00070377	1.4024	0.0006813	-0.046239	-2.2463E-05	485.80589551191565	29.834	0.60585	29.834	29.57	30.176	0					20	14	2	0	0	0	0.027866	1	1847	1847		31.955	0	1	69731			66578	2053	46931	46998	71823	71823					0.11110039576863073
RKKNLSIN	8	Unmodified	_RKKNLSIN_					0	0	0			REV__ENST00000371108.8_1_1:63836517-63836580:+|nuORF	REV__ENST00000371108.8_1_1:63836517-63836580:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.8030700683594	2	486.801083	971.587613	0.071053	3.4589E-05	2.9239	0.0014234	2.995	0.001458	486.80213940177424	88.61	0.98146	88.626	88.193	89.174	0.015915					55	22	4	0	0	0	0.99042	1	11083	11083		38.806	0	1	515090	+		66579	31149	46932	46999	71824	71824					0.10068271291322617
RKKRIPKKPE	10	Unmodified	_RKKRIPKKPE_					0	0	0		ENST00000562687.6_3_16:32769598-32772029:+|nuORF	ENST00000562687.6_3_16:32769598-32772029:+|nuORF	ENST00000562687.6_3_16:32769598-32772029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2646179199219	3	427.282218	1278.82482	-0.40909	-0.0001748	0.77228	0.00032998	0.36319	0.00015519	427.28288754405514	54.048	0.4507	54.048	53.942	54.393	0					30	12	4	0	0	0	0.03519	1	5869	5869		22.58	8.4936	1	527490			66580	16846	46933	47000	71825	71825					0.1965641750468876
RKKRIPKKPE	10	Unmodified	_RKKRIPKKPE_					0	0	0		ENST00000562687.6_3_16:32769598-32772029:+|nuORF	ENST00000562687.6_3_16:32769598-32772029:+|nuORF	ENST00000562687.6_3_16:32769598-32772029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.26483154296875	3	427.282218	1278.82482	-0.040638	-1.7364E-05	2.8782	0.0012298	2.8376	0.0012125	427.6183564940047	54.093	0.23608	53.946	53.784	54.02	-0.14723					9	6	2	0	0	0	0.03519	1	5869	5869		14.694	0	1	242770			66581	16846	46933	47000	71826	71826					0.1965641750468876
RKKRIPKKPE	10	Unmodified	_RKKRIPKKPE_					0	0	0		ENST00000562687.6_3_16:32769598-32772029:+|nuORF	ENST00000562687.6_3_16:32769598-32772029:+|nuORF	ENST00000562687.6_3_16:32769598-32772029:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	427.282218	1278.82482	-0.031938	-1.3647E-05	0.61519	0.00026286	0.58325	0.00024921	427.28190049077006	53.832	0.091724	53.635	53.588	53.68	-0.19739	-0.24124	-0.0016297	NaN	22.58	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76674			66582	16846	46933	47000							0.1965641750468876
RKKRRKEAAH	10	Unmodified	_RKKRRKEAAH_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2650146484375	3	427.26545	1278.77452	-0.45996	-0.00019653	-1.9605	-0.00083766	-2.4205	-0.0010342	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0997	1	5893	5893		32.751	9.3726	1	57851000	+		66583	26449	46934	47001	71827	71827					0.1462830789957934
RKKRRKEAAH	10	Unmodified	_RKKRRKEAAH_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2625427246094	3	427.26545	1278.77452	-0.029898	-1.2774E-05	-2.351	-0.0010045	-2.3809	-0.0010173	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0924	5	6530	5857;5869;5881;5954;6530		32.751	12.72	1	50736000	+		66584	26449	46934	47001	71828;71829;71830;71831;71832	71832					0.1462830789957934
RKKRRKEAAH	10	Unmodified	_RKKRRKEAAH_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2648010253906	3	427.26545	1278.77452	0.50024	0.00021373	-2.9116	-0.001244	-2.4113	-0.0010303	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.118	3	5818	5782;5794;5818		25.126	4.0938	1	61030000	+		66585	26449	46934	47001	71833;71834;71835	71835					0.1462830789957934
RKKRRKEAAH	10	Unmodified	_RKKRRKEAAH_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.2646484375	3	427.26545	1278.77452	-0.58513	-0.00025001	-1.8638	-0.00079632	-2.4489	-0.0010463	427.2647783278071	53.901	2.7621	53.765	53.393	56.155	-0.13616					276	78	6	0	0	0	1.1081	1	5710	5710		31.634	6.5083	1	50487000	+		66586	26449	46934	47001	71836	71836					0.1462830789957934
RKKRRKEAAH	10	Unmodified	_RKKRRKEAAH_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.26513671875	3	427.26545	1278.77452	0.1987	8.4896E-05	-2.6399	-0.0011279	-2.4412	-0.001043	427.26444300600974	54.063	2.6284	53.818	53.421	56.049	-0.2453					263	76	6	0	0	0	1.1295	1	5692	5692		26.063	2.5407	1	50149000	+		66587	26449	46934	47001	71837	71837					0.1462830789957934
RKKRRKEAAH	10	Unmodified	_RKKRRKEAAH_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.2649841308594	3	427.26545	1278.77452	0.33845	0.00014461	-2.8117	-0.0012013	-2.4732	-0.0010567	427.2643585414106	53.977	2.4471	53.78	53.422	55.869	-0.19739					232	69	6	0	0	0	1.1333	1	5692	5692		28.081	4.7036	1	46473000	+		66588	26449	46934	47001	71838	71838					0.1462830789957934
RKKRVVLSKE	10	Unmodified	_RKKRVVLSKE_					0	0	0			REV__RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	REV__RNF111|p.P773Hfs*44|1|0.23|ENSG00000157450|chr15:59084144-59084144|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.8997192382812	2	621.903871	1241.79319	0.31982	0.0001989	-4.2934	-0.0026701	-3.9735	-0.0024712	622.4027589150551	105.92	0.44003	105.92	105.73	106.17	-0.0013123					35	15	4	0	0	0	1.1197	1	13544	13544		20.947	0.95016	1	756240	+		66589	25131	46935	47002	71839	71839					0.18196424750726692
RKKSLGKID	9	Unmodified	_RKKSLGKID_					0	0	0			REV__ENST00000490747.1_1_7:92199124-92206443:-|nuORF	REV__ENST00000490747.1_1_7:92199124-92206443:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7318725585938	2	522.82984	1043.64513	-0.53023	-0.00027722	0.84375	0.00044114	0.31353	0.00016392	522.8301950425266	38.272	0.38998	38.054	37.828	38.218	-0.21848					17	11	2	0	0	0	0.024527	1	3115	3115		39.253	7.723	1	273690	+		66590	28916	46936	47003	71840	71840					0.12505113496899867
RKKTVGRPH	9	Unmodified	_RKKTVGRPH_					0	0	0		TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.8330688476562	2	539.833249	1077.65194	2.6493	0.0014302	-2.4768	-0.0013371	0.17247	9.3103E-05	539.8320279274287	18.904	0.88537	18.967	18.501	19.386	0.063307					28	17	3	0	0	0	0.87448	1	318	318		34.173	7.3764	1	139220			66591	38065	46937	47004	71841	71841					0.11622471168129778
RKKTVGRPH	9	Unmodified	_RKKTVGRPH_					0	0	0		TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	TGFB2|p.N274Tfs*10|1|0.17|ENSG00000092969|chr1:218436029-218436029|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.8328857421875	2	539.833249	1077.65194	0.27058	0.00014607	-0.52765	-0.00028485	-0.25708	-0.00013878	539.8328408200277	19.132	0.79329	18.928	18.658	19.452	-0.20371					34	15	4	0	0	0	0.75397	1	376	376		42.396	3.3746	1	367610			66592	38065	46937	47004	71842	71842					0.11622471168129778
RKLAKGPL	8	Unmodified	_RKLAKGPL_					0	0	0			REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7878723144531	2	441.797812	881.581071	0.26741	0.00011814	2.357	0.0010413	2.6244	0.0011594	441.7984534527739	40.533	0.23954	40.533	40.347	40.587	0					8	6	2	0	0	0	0.027866	1	3554	3554		18.324	14.339	1	345810	+		66593	24533	46938	47005	71843	71843					0.1355437813061826
RKLAKGPL	8	Unmodified	_RKLAKGPL_					0	0	0			REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.797812	881.581071	0.93868	0.00041471	5.6696	0.0025048	6.6083	0.0029195	441.7999121244599	40.759	0.88805	40.636	40.336	41.224	-0.12317	0.092705	-0.0010154	NaN	18.324	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281470	+		66594	24533	46938	47005							0.1355437813061826
RKLAKGPL	8	Unmodified	_RKLAKGPL_					0	0	0			REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	441.797812	881.581071	-0.7412	-0.00032746	8.6762	0.0038331	7.935	0.0035057	441.8014182227107	40.64	0.6748	40.49	40.258	40.933	-0.1497	-0.052803	0.0016412	NaN	18.324	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160100	+		66595	24533	46938	47005							0.1355437813061826
RKLAKGPL	8	Unmodified	_RKLAKGPL_					0	0	0			REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	REV__ENST00000483560.1_1_X:70279478-70282733:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.797812	881.581071	-0.27675	-0.00012227	10.237	0.0045225	9.9598	0.0044002	441.80350967524924	40.739	0.25063	40.514	40.368	40.619	-0.225	-0.029291	0.0030199	NaN	18.324	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110890	+		66596	24533	46938	47005							0.1355437813061826
RKLEAIFH	8	Unmodified	_RKLEAIFH_					0	0	0			REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2951965332031	2	507.298176	1012.5818	0.17411	8.8327E-05	-4.2299	-0.0021458	-4.0558	-0.0020575	507.2959247911687	18.209	0.54043	18.077	17.712	18.253	-0.13148					29	10	4	0	0	0	0.93274	1	243	243		47.916	1.9636	1	262090	+		66597	32150	46939	47006	71844	71844					0.07601172779652643
RKLETRRIEKL	11	Unmodified	_RKLETRRIEKL_					0	0	0			REV__nc|ENSG00000111912|Q8NI08-6|NCOA7	REV__nc|ENSG00000111912|Q8NI08-6|NCOA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2968444824219	3	481.30357	1440.88888	-0.33453	-0.00016101	-3.5157	-0.0016921	-3.8502	-0.0018531	481.3017018881956	46.364	0.49566	46.103	45.854	46.35	-0.26118					29	12	3	0	0	0	0.02483	1	4433	4433		20.315	3.1483	1	797610	+		66598	21957	46940	47007	71845	71845					0.18607152871004473
RKLLEPAP	8	Unmodified	_RKLLEPAP_					0	0	0		ENST00000379619.5_1_2:28638002-28638248:+|nuORF	ENST00000379619.5_1_2:28638002-28638248:+|nuORF	ENST00000379619.5_1_2:28638002-28638248:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2198181152344	2	462.287277	922.560001	0.26347	0.0001218	-2.4802	-0.0011466	-2.2167	-0.0010248	462.28568535419987	60.137	0.44956	60.137	59.88	60.33	0					14	11	2	0	0	0	0.027866	1	6899	6899		76.847	28.931	1	100270			66599	13274	46941	47008	71846	71846					0.09562368031083679
RKLLHLSLASN	11	Unmodified	_RKLLHLSLASN_					0	0	0		CDKL5|p.S847L|1|0.4|ENSG00000008086|chrX:18628414-18628414|C/T|missense_variant	CDKL5|p.S847L|1|0.4|ENSG00000008086|chrX:18628414-18628414|C/T|missense_variant	CDKL5|p.S847L|1|0.4|ENSG00000008086|chrX:18628414-18628414|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.9225158691406	3	417.922578	1250.7459	0.28462	0.00011895	-1.0338	-0.00043203	-0.74913	-0.00031308	417.9220987365481	104.41	1.0474	104.4	104.07	105.12	-0.0032196					79	30	4	0	0	0	1.0532	1	13325	13325		24.232	0.85391	1	2347400			66600	244	46942	47009	71847	71847					0.13056145479777115
RKLLSRPD	8	Unmodified	_RKLLSRPD_					0	0	0			REV__ENSG00000206422|ENST00000383467|LRRC30	REV__ENSG00000206422|ENST00000383467|LRRC30	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.8008728027344	2	492.801083	983.587613	-0.79003	-0.00038933	-0.12333	-6.0775E-05	-0.91336	-0.0004501	492.80102220493694	36.178	1.6179	36.178	35.687	37.305	0					102	43	5	0	0	0	0.96769	1	2867	2867		42.396	0	1	21568000	+		66601	28707	46943	47010	71848	71848					0.09516271291317935
RKLLYRKL	8	Unmodified	_RKLLYRKL_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2828369140625	2	545.366393	1088.71823	0.16471	8.9828E-05	-0.49389	-0.00026935	-0.32918	-0.00017952	545.3669750122154	51.092	0.33966	50.816	50.665	51.004	-0.27643					15	8	3	0	0	0	0.027866	1	5229	5229		25.45	0	1	242030	+		66602	26720	46944	47011	71849	71849					0.1774228701017364
RKLQQNKT	8	Unmodified	_RKLQQNKT_					0	0	0			REV__RBBP8|p.R67Kfs*16|1|0.05|ENSG00000101773|chr18:22949664-22949665|-/AAAGGTCAGGTTGGAATATCTT|frameshift_variant	REV__RBBP8|p.R67Kfs*16|1|0.05|ENSG00000101773|chr18:22949664-22949665|-/AAAGGTCAGGTTGGAATATCTT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.310546875	2	508.30399	1014.59343	-0.56464	-0.00028701	-0.9233	-0.00046932	-1.4879	-0.00075632	508.3036298173352	31.724	0.32021	31.57	31.377	31.697	-0.15475					24	7	5	0	0	0	0.027866	1	2118	2118		45.972	10.354	1	85167	+		66603	37431	46945	47012	71850	71850					0.08671369802982554
RKLRRRREKER	11	Unmodified	_RKLRRRREKER_					0	0	0			REV__ENSG00000165091|ENST00000297784|TMC1	REV__ENSG00000165091|ENST00000297784|TMC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2982788085938	3	528.332745	1581.97641	-0.21501	-0.0001136	-0.26997	-0.00014263	-0.48498	-0.00025623	528.6673576158659	106.15	0.31264	106.15	105.99	106.3	-0.0013123					21	10	3	0	0	0	0.024904	1	13606	13606		0.3405	0.3405	1	136360	+		66604	25836	46946	47013	71851	71851					0.20869791585073472
RKLRRRREKER	11	Unmodified	_RKLRRRREKER_					0	0	0			REV__ENSG00000165091|ENST00000297784|TMC1	REV__ENSG00000165091|ENST00000297784|TMC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	528.332745	1581.97641	-1.3333	-0.00070444	0.40143	0.00021209	-0.9319	-0.00049235	528.3326524523818	106.38	0.22025	106.24	106.09	106.31	-0.1328	0.047775	0.00050479	NaN	0.3405	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109220	+		66605	25836	46946	47013							0.20869791585073472
RKLSAHSA	8	Unmodified	_RKLSAHSA_					0	0	0		nc|ENSG00000173567|Q8IZF5-2|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.251708984375	2	435.251226	868.487899	-0.12255	-5.3339E-05	-0.018907	-8.2295E-06	-0.14146	-6.1569E-05	435.25111460879765	92.192	2.6749	92.07	91.036	93.711	-0.12242					106	62	3	0	0	0	1.043	1	11334	11334		30.504	2.6214	1	1311600			66606	8384	46947	47014	71852	71852					0.048394536773685104
RKLTKGLALKD	11	Unmodified	_RKLTKGLALKD_					0	0	0			REV__ENSG00000280090|ENST00000356130|OR8B4	REV__ENSG00000280090|ENST00000356130|OR8B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.8990478515625	2	621.898254	1241.78196	0.08008	4.9802E-05	4.0579	0.0025236	4.138	0.0025734	621.9004442619971	105.28	0.42126	105.28	105.06	105.48	0					31	10	4	0	0	0	1.0748	1	13518	13518		18.262	4.125	1	1795800	+		66607	29232	46948	47015	71853	71853					0.17073602656569165
RKLVIDVV	8	Unmodified	_RKLVIDVV_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.3106384277344	2	471.310752	940.606951	0.34289	0.00016161	-2.1973	-0.0010356	-1.8544	-0.00087401	471.31043553728017	34.288	0.93396	34.284	33.988	34.922	-0.0045624					58	23	5	0	0	0	0.845	1	2542	2542		55.504	4.1688	1	3376000			66608	6801	46949	47016	71854	71854					0.13427227582224077
RKLVVLIT	8	Unmodified	_RKLVVLIT_					0	0	0		nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;ENST00000382963.5_1_Y:14518277-14532142:-|nuORF;ENST00000357871.6_1_Y:14514177-14532211:-|nuORF	nc|ENSG00000056998|O15488-5|GYG2	nc|ENSG00000056998|O15488-5|GYG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.30828857421875	2	471.328945	940.643337	-0.036514	-1.721E-05	2.9546	0.0013926	2.9181	0.0013754	471.3307324998889	17.348	0.20047	17.141	17.065	17.265	-0.20669					5	3	2	0	0	0	0.027866	1	157	157		17.365	0	1	13321			66609	1200	46950	47017	71855	71855					0.17064104478936315
RKLYLADKL	9	Unmodified	_RKLYLADKL_					0	0	0			REV__ENST00000400000.6_1_18:9955494-9955929:+|nuORF	REV__ENST00000400000.6_1_18:9955494-9955929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3492431640625	2	560.347866	1118.68118	-0.034242	-1.9187E-05	2.7243	0.0015265	2.69	0.0015073	560.3494057075354	106.07	0.48589	106.07	105.81	106.3	0.00014496					46	18	3	0	0	0	0.94809	1	13522	13522		29.15	5.6269	1	450830	+		66610	31846	46951	47018	71856	71856					0.1265857067376146
RKMLKESQKLH	11	Unmodified	_RKMLKESQKLH_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.60809326171875	3	466.606373	1396.79729	1.035	0.00048292	2.5818	0.0012047	3.6168	0.0016876	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.0371	1	12765	12765		28.577	10.046	1	655350			66611	9860	46952	47019	71857	71857					0.11476146182167213
RKMLKESQKLH	11	Unmodified	_RKMLKESQKLH_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6080322265625	3	466.606373	1396.79729	0.67563	0.00031525	2.9651	0.0013835	3.6407	0.0016988	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0764	1	12425	12425		17.833	0.6664	1	1258700			66612	9860	46952	47019	71858	71858					0.11476146182167213
RKNLNEHKL	9	Unmodified	_RKNLNEHKL_					0	0	0		nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.3358154296875	2	576.335821	1150.65709	0.84298	0.00048584	-1.0009	-0.00057686	-0.15794	-9.1026E-05	576.33513747324	18.379	0.44362	18.223	18.002	18.445	-0.15637					23	8	4	0	0	0	0.4752	1	306	306		60.972	0.85368	1	351050			66613	18789	46953	47020	71859	71859					0.08778730240078403
RKPEPQVL	8	Unmodified	_RKPEPQVL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7900390625	2	483.790184	965.565815	-0.191	-9.2404E-05	-0.022069	-1.0677E-05	-0.21307	-0.00010308	483.7900658872306	47.71	1.4158	47.557	47.089	48.505	-0.15301					76	41	3	0	0	0	0.98759	1	4798	4798		39.253	2.0937	1	5322100			66614	9881	46954	47021	71860	71860					0.08165466542754984
RKPLHYAADC	10	Unmodified	_RKPLHYAADC_					0	0	0		ENSG00000105887|ENST00000393085|MTPN	ENSG00000105887|ENST00000393085|MTPN	ENSG00000105887|ENST00000393085|MTPN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	587.2955932617188	2	587.295307	1172.57606	-1.2899	-0.00075757	1.7704	0.0010397	0.48045	0.00028217	587.2962896828783	73.504	0.50898	73.504	73.146	73.655	0					45	13	5	0	0	0	1.1197	1	8986	8986		20.947	1.587	1	11793000			66615	2733	46955	47022	71861	71861					-0.0033229379432668793
RKPRIRDRLPK	11	Unmodified	_RKPRIRDRLPK_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7823486328125	3	478.975788	1433.90553	-0.13944	-6.6788E-05	-2.7673	-0.0013255	-2.9068	-0.0013923	478.97431000939986	43.613	1.1589	43.504	43.186	44.345	-0.10841					98	31	4	0	0	0	0.024882	1	4051	4051		8.4073	0	1	990990			66616	3867	46956	47023	71862	71862					0.2059369854760007
RKPSQRID	8	Unmodified	_RKPSQRID_					0	0	0			REV__nc|ENSG00000151067|Q13936-17|CACNA1C	REV__nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2881774902344	2	500.28834	998.562127	-0.024409	-1.2211E-05	-1.9152	-0.00095813	-1.9396	-0.00097034	500.2880362581526	23.812	1.0567	23.888	23.351	24.408	0.076241					66	23	6	0	0	0	0.87148	1	946	946		53.351	1.0523	1	2767700	+		66617	24748	46957	47024	71863	71863					0.06278796768901884
RKPYHKKRKY	10	Unmodified	_RKPYHKKRKY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.61761474609375	3	468.6176	1402.83097	1.6778	0.00078625	-1.8637	-0.00087334	-0.18585	-8.7095E-05	468.61668429529504	16.657	1.2129	16.503	16.344	17.557	-0.15376					75	25	5	0	0	0	1.0545	4	101	80;91;101;112		38.754	14.13	1	766450			66618	5596	46958	47025	71864;71865;71866;71867	71866					0.14566935736206688
RKQLIANI	8	Unmodified	_RKQLIANI_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7435607910156	2	478.306001	954.597449	-0.27805	-0.000133	0.19819	9.4794E-05	-0.079868	-3.8201E-05	478.30599140548475	29.85	0.69194	29.859	29.597	30.289	0.0086708					36	16	3	0	0	0	0.027866	1	1880	1880		65.803	0	1	670770	+		66619	22316	46959	47026	71868	71868					0.11833459296701676
RKQRKERKNRM	11	Unmodified	_RKQRKERKNRM_					0	0	0		ENSG00000138326|ENST00000372360|RPS24;ENST00000485708.6_1_10:79793659-79797725:+|nuORF;ENST00000478655.5_1_10:79793659-79797065:+|nuORF;nc|ENSG00000138326|P62847-3|RPS24;nc|ENSG00000138326|P62847|RPS24;ENST00000465692.1_1_10:79795142-79808843:+|nuORF;nc|ENSG00000138326|P62847-4|RPS24	ENSG00000138326|ENST00000372360|RPS24	ENSG00000138326|ENST00000372360|RPS24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.6346740722656	3	510.635437	1528.88448	0.22157	0.00011314	-0.9098	-0.00046457	-0.68823	-0.00035143	510.6341188166971	103.2	1.4715	103.03	102.46	103.93	-0.17034					118	35	5	0	0	0	1.096	1	12869	12869		12.433	4.0256	1	318810			66620	5226	46960	47027	71869	71869					0.1411936517642971
RKQRRRERWLQ	11	Unmodified	_RKQRRRERWLQ_					0	0	0		nc|ENSG00000164197|Q86T96-2|RNF180;ENSG00000164197|ENST00000389100|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5549011230469	4	403.740828	1610.93421	0.91265	0.00036847	-3.1389	-0.0012673	-2.2263	-0.00089885	403.7394466001771	22.357	0.3686	22.168	21.959	22.327	-0.18894					11	7	2	0	0	0	0.024888	1	779	779		3.2113	0	1	30005			66621	7238	46961	47028	71870	71870					0.15317816176752785
RKQRSHLF	8	Unmodified	_RKQRSHLF_					0	0	0		nc|ENSG00000124215|Q8IXH8-1|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	nc|ENSG00000124215|Q8IXH8-1|CDH26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3112182617188	2	536.312149	1070.60975	0.12215	6.5509E-05	-1.1094	-0.00059501	-0.9873	-0.0005295	536.31166725568	96.915	0.84087	96.924	96.575	97.415	0.0089111					45	18	4	0	0	0	1.0239	1	12334	12334		33.516	4.366	1	475090			66622	18237	46962	47029	71871	71871					0.07726495759743557
RKRDPKSKY	9	Unmodified	_RKRDPKSKY_					0	0	0			REV__nc|ENSG00000153707|P23468-7|PTPRD	REV__nc|ENSG00000153707|P23468-7|PTPRD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.343505859375	2	589.343646	1176.67274	0.92698	0.00054631	-2.8783	-0.0016963	-1.9514	-0.00115	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	0.87448	1	11485	11485		34.173	1.422	1	4746700	+		66623	36796	46963	47030	71872	71872					0.09147016757151505
RKRDVLGYSK	10	Unmodified	_RKRDVLGYSK_					0	0	0		ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.354736328125	2	611.356754	1220.69895	-0.79597	-0.00048662	-0.30054	-0.00018373	-1.0965	-0.00067036	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.0992	1	11516	11516		32.812	1.1781	1	4189200			66624	9008	46964	47031	71873	71873					0.09743285928584555
RKRELKAM	8	Unmodified	_RKRELKAM_					0	0	0		ENST00000421004.3_1_5:77655801-77656260:-|nuORF	ENST00000421004.3_1_5:77655801-77656260:-|nuORF	ENST00000421004.3_1_5:77655801-77656260:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.31396484375	2	516.310761	1030.60697	1.2467	0.00064367	4.0381	0.0020849	5.2848	0.0027286	516.3127200758097	98.004	2.6622	97.879	97.018	99.68	-0.12414					214	65	6	0	0	0	0.97924	2	12190	12178;12190		40.573	8.6178	1	30440000			66625	13989	46965	47032	71874;71875	71875					0.09288904310574253
RKRFKRHQL	9	Unmodified	_RKRFKRHQL_					0	0	0		ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3;ENSG00000184492|ENST00000306507|FOXD4L1	ENSG00000204779|ENST00000377420|FOXD4L5	ENSG00000204779|ENST00000377420|FOXD4L5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	634.893310546875	2	634.894172	1267.77379	0.41338	0.00026245	-2.9242	-0.0018566	-2.5108	-0.0015941	634.8925865119255	104.35	1.0618	104.35	103.98	105.04	0					81	29	5	0	0	0	0.92825	1	13416	13416		30.504	5.0535	1	1987300			66626	9360	46966	47033	71876	71876					0.15061513250520875
RKRFKRHQL	9	Unmodified	_RKRFKRHQL_					0	0	0		ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3;ENSG00000184492|ENST00000306507|FOXD4L1	ENSG00000204779|ENST00000377420|FOXD4L5	ENSG00000204779|ENST00000377420|FOXD4L5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.8927612304688	2	634.894172	1267.77379	0.73687	0.00046784	-2.9731	-0.0018876	-2.2362	-0.0014198	634.8922740551877	104.3	1.0119	104.3	103.98	104.99	0.0031357					77	28	5	0	0	0	0.92825	1	13335	13335		30.504	1.3541	1	1973800			66627	9360	46966	47033	71877	71877					0.15061513250520875
RKRFKRHQL	9	Unmodified	_RKRFKRHQL_					0	0	0		ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3;ENSG00000184492|ENST00000306507|FOXD4L1	ENSG00000204779|ENST00000377420|FOXD4L5	ENSG00000204779|ENST00000377420|FOXD4L5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.893798828125	2	634.894172	1267.77379	-0.77889	-0.00049451	-2.0808	-0.0013211	-2.8597	-0.0018156	634.893164047008	104.43	1.0818	104.31	103.92	105	-0.1256					92	31	5	0	0	0	0.92825	2	12965	12965;12994		30.504	6.3009	1	1853200			66628	9360	46966	47033	71878;71879	71878					0.15061513250520875
RKRGKYLR	8	Unmodified	_RKRGKYLR_					0	0	0		ENST00000460660.1_1_2:201677931-201678069:+|nuORF	ENST00000460660.1_1_2:201677931-201678069:+|nuORF	ENST00000460660.1_1_2:201677931-201678069:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.296875	2	538.843616	1075.67268	3.0031	0.0016182	-2.9981	-0.0016155	0.0050591	2.7261E-06	538.841998173495	17.355	0.19865	17.355	17.25	17.449	0					5	3	2	0	0	0	0.027866	1	147	147		8.8223	0.59103	1	8743.6			66629	14662	46967	47034	71880	71880					0.13787061547782287
RKRINIYKREV	11	Unmodified	_RKRINIYKREV_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.79901123046875	3	492.303681	1473.88921	0.42087	0.00020719	0.37822	0.0001862	0.79908	0.00039339	492.30407112454225	52.799	0.24065	52.54	52.443	52.683	-0.25838					11	5	3	0	0	0	0.024856	1	5509	5509		13.508	8.3656	1	103680	+		66630	26893	46968	47035	71881	71881					0.1712257259080161
RKRKAKPS	8	Unmodified	_RKRKAKPS_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7768249511719	2	485.817067	969.619582	-0.65423	-0.00031784	-3.8409	-0.001866	-4.4951	-0.0021838	485.8142676113155	29.835	0.28515	29.844	29.637	29.922	0.0086708					9	6	2	0	0	0	0.027866	1	1826	1826		31.955	5.1588	1	46110	+		66631	20350	46969	47036	71882	71882					0.13355683765132653
RKRKKKTA	8	Unmodified	_RKRKKKTA_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|16|1|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|16|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3036193847656	2	508.345992	1014.67743	-0.029932	-1.5216E-05	-3.5192	-0.001789	-3.5491	-0.0018042	508.34573203459024	26.069	0.48999	26.15	25.924	26.414	0.081293					20	11	3	0	0	0	0.027866	1	1277	1277		55.504	0	1	201140	+		66632	36387	46970	47037	71883	71883					0.17067945690564557
RKRKRTHVSN	10	Unmodified	_RKRKRTHVSN_					0	0	0			REV__ENST00000373055.5_1_1:38167433-38168935:+|nuORF	REV__ENST00000373055.5_1_1:38167433-38168935:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.3851318359375	2	641.384168	1280.75378	0.39619	0.00025411	0.80361	0.00051542	1.1998	0.00076953	641.3844593600777	101.4	0.64845	101.39	101.11	101.75	-0.0054474					45	14	4	0	0	0	1.1266	1	12900	12900		29.17	0	1	972200	+		66633	31230	46971	47038	71884	71884					0.12463717519881357
RKRKYLLSDS	10	Unmodified	_RKRKYLLSDS_					0	0	0			REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3687744140625	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0616	1	11832	11832		37.812	6.2817	1	9845500	+		66634	28022	46972	47039	71885	71885					0.10339555100085818
RKRNTGVSI	9	Unmodified	_RKRNTGVSI_					0	0	0			REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.787841796875	2	515.809439	1029.60433	-0.094348	-4.8666E-05	-2.2594	-0.0011654	-2.3538	-0.0012141	515.8095771723493	49.056	0.1712	49.056	49.005	49.176	0					5	4	2	0	0	0	0.024427	1	5065	5065		51.335	8.861	1	108670	+		66635	20815	46973	47040	71886	71886					0.09070772177301478
RKRPRQSHSK	10	Unmodified	_RKRPRQSHSK_					0	0	0			REV__ENST00000216471.4_1_14:77843861-77843990:+|nuORF	REV__ENST00000216471.4_1_14:77843861-77843990:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2646179199219	3	427.253321	1278.73813	-0.25613	-0.00010943	1.0592	0.00045255	0.80308	0.00034312	427.25392989586504	53.992	0.28032	53.992	53.763	54.043	0					14	7	3	0	0	0	0.03519	1	5869	5869		24.232	16.832	1	418020	+		66636	29320	46974	47041	71887	71887					0.10991431002844365
RKRQKNVF	8	Unmodified	_RKRQKNVF_					0	0	0		SFMBT1|p.R671Q|1|0.66|ENSG00000163935|chr3:52907628-52907628|C/T|missense_variant	SFMBT1|p.R671Q|1|0.66|ENSG00000163935|chr3:52907628-52907628|C/T|missense_variant	SFMBT1|p.R671Q|1|0.66|ENSG00000163935|chr3:52907628-52907628|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.328125	2	538.327799	1074.64105	0.30756	0.00016557	-1.5869	-0.00085427	-1.2793	-0.0006887	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	1.0574	1	12459	12459		25.45	3.4903	1	21168000			66637	20667	46975	47042	71888	71888					0.10671068793840277
RKRRERNFEK	10	Unmodified	_RKRRERNFEK_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2696838378906	3	473.607764	1417.80146	4.2036	0.0019908	-2.1247	-0.0010063	2.0789	0.00098458	473.60660339326057	17.447	0.19873	17.447	17.3	17.498	0					5	3	2	0	0	0	0.03519	1	169	169		13.508	1.0751	1	13390			66638	8158	46976	47043	71889	71889					0.10927371720072188
RKRRRSRPWR	10	Unmodified	_RKRRRSRPWR_					0	0	0		ENST00000370995.6_2_1:67891962-67895727:-|nuORF;SERBP1|p.S85Afs*22|1|0.07|ENSG00000142864|chr1:67430049-67430049|G/-|frameshift_variant	ENST00000370995.6_2_1:67891962-67895727:-|nuORF	ENST00000370995.6_2_1:67891962-67895727:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2881164550781	3	485.299376	1452.8763	4.6203	0.0022422	1.7762	0.00086199	6.3965	0.0031042	485.3001523670997	17.704	0.72061	17.764	17.537	18.258	0.06036					22	17	2	0	0	0	0.03519	1	210	210		7.8045	0	1	17636			66639	12980	46977	47044	71890	71890					0.16797599041979083
RKRSDSNKLP	10	Unmodified	_RKRSDSNKLP_					0	0	0			REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	MSMS	OPSCC_40_ClassI_Rep-1	4	400.9047546386719	3	400.898432	1199.67347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.525	1	15.371	14.871	15.871	-0.15376								0	0	0	0.77833	1	23	23		11.097	0.99287	1		+		66640	24516	46978	47045	71891	71891					0.0816181140619392
RKRTLTEQSP	10	Unmodified	_RKRTLTEQSP_					0	0	0			REV__ENSG00000025293|ENST00000374012|PHF20	REV__ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	405.8996887207031	3	405.898321	1214.67313	0.6286	0.00025515	2.9005	0.0011773	3.5291	0.0014324	405.89943667541786	23.764	0.9944	23.562	23.195	24.19	-0.20193					64	22	4	0	0	0	0.91448	1	978	978		49.466	0	1	1125800	+		66641	20020	46979	47046	71892	71892					0.07438391686309842
RKRTVGEGL	9	Unmodified	_RKRTVGEGL_					0	0	0			REV__ENST00000526094.5_1_17:42295802-42295859:-|nuORF	REV__ENST00000526094.5_1_17:42295802-42295859:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3023376464844	2	508.30399	1014.59343	-0.56752	-0.00028847	-1.0697	-0.00054374	-1.6372	-0.00083221	508.30375317172104	26.205	2.0458	26.182	25.864	27.91	-0.023088					152	51	6	0	0	0	0.34489	1	1274	1274		69.628	2.134	1	77525000	+		66642	34430	46980	47047	71893	71893					0.08671369803005291
RKRTVGKV	8	Unmodified	_RKRTVGKV_					0	0	0			REV__ENST00000589195.1_1_17:42307151-42307565:-|nuORF	REV__ENST00000589195.1_1_17:42307151-42307565:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7667236328125	2	472.311618	942.608683	1.253	0.00059179	1.4788	0.00069844	2.7317	0.0012902	472.3121945841957	71.277	0.89366	70.988	70.719	71.613	-0.28858					44	22	3	0	0	0	0.027866	1	8625	8625		42.396	0	1	742560	+		66643	35669	46981	47048	71894	71894					0.13508281390852517
RKRYRLEYKRK	11	Unmodified	_RKRYRLEYKRK_					0	0	0			REV__ENSG00000153157|ENST00000283141|SYCP2L	REV__ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.284912109375	3	532.658347	1594.95321	1.2434	0.00066229	3.5997	0.0019174	4.8431	0.0025797	532.6595841793883	17.186	0.25206	17.032	16.856	17.108	-0.15403					9	4	3	0	0	0	0.024901	1	140	140		1.523	1.1516	1	28601	+		66644	24889	46982	47049	71895	71895					0.179533527477588
RKSIYLSTEF	10	Unmodified	_RKSIYLSTEF_					0	0	0		nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.8385620117188	2	622.337695	1242.66084	0.2866	0.00017836	-2.18	-0.0013567	-1.8934	-0.0011783	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.1096	1	13576	13576		15.642	0	1	1619900			66645	5933	46983	47050	71896	71896					0.0492135522326862
RKSLLMKPRH	10	Unmodified	_RKSLLMKPRH_					0	0	0		ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.5926818847656	3	422.592286	1264.75503	0.31209	0.00013189	0.95072	0.00040177	1.2628	0.00053365	422.59259397297745	49.759	3.148	49.654	48.913	52.061	-0.10558					256	83	5	0	0	0	1.1311	1	5027	5027		28.577	2.5133	1	11811000			66646	5973	46984	47051	71897	71897					0.13324215564421138
RKSLRSLR	8	Unmodified	_RKSLRSLR_					0	0	0		ENST00000543879.6_1_15:35174782-35176793:-|nuORF	ENST00000543879.6_1_15:35174782-35176793:-|nuORF	ENST00000543879.6_1_15:35174782-35176793:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	2	508.327799	1014.64105	-0.56732	-0.00028839	4.1467	0.0021079	3.5793	0.0018195	508.3300328404418	26.142	0.5742	26.142	25.957	26.531	0					23	13	3	0	0	0	0.027866	1	1331	1331		71.877	25.111	1	316640			66647	16473	46985	47052	71898	71898					0.1343106879384095
RKSSHLKKLN	10	Unmodified	_RKSSHLKKLN_					0	0	0		nc|ENSG00000061337|Q9Y250-7|LZTS1;nc|ENSG00000061337|Q9Y250-6|LZTS1;nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.8717651367188	2	605.872571	1209.73059	-0.60046	-0.0003638	-0.31946	-0.00019355	-0.91992	-0.00055735	605.8721410970385	98.62	1.0824	98.616	98.307	99.389	-0.0038834					72	24	4	0	0	0	1.0992	1	12540	12540		32.812	6.749	1	1075200			66648	1243	46986	47053	71899	71899					0.13411278682565353
RKSSLLKKY	9	Unmodified	_RKSSLLKKY_					0	0	0		ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	ENSG00000205765|ENST00000381647|RIMOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2701416015625	2	561.853316	1121.69208	-0.78486	-0.00044098	3.8546	0.0021657	3.0698	0.0017248	562.3563967384998	26.392	0.50031	26.156	25.916	26.416	-0.23603					21	14	2	0	0	0	0.024447	1	1372	1372		32.812	16.339	1	272340			66649	10445	46987	47054	71900	71900					0.1360997304805096
RKSWNQKH	8	Unmodified	_RKSWNQKH_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2963256835938	2	542.293956	1082.57336	2.3651	0.0012826	0.23137	0.00012547	2.5965	0.0014081	542.2939958365852	18.163	0.978	18.163	17.746	18.724	0					44	19	3	0	0	0	1.0574	1	247	247		21.96	0	1	848620			66650	9189	46988	47055	71901	71901					0.03537618863038006
RKTLLDEV	8	Unmodified	_RKTLLDEV_					0	0	0			REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	REV__nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.28985595703125	2	487.287474	972.560395	-0.48048	-0.00023413	4.0701	0.0019833	3.5897	0.0017492	487.28957749521226	93.236	1.4603	93.232	92.647	94.107	-0.0042038					71	34	4	0	0	0	0.83003	1	11796	11796		56.721	1.9447	1	1265900	+		66651	23691	46989	47056	71902	71902					0.0730174296027144
RKTPNKRAY	9	Unmodified	_RKTPNKRAY_					0	0	0			REV__nc|ENSG00000221994|Q2M218-2|ZNF630	REV__nc|ENSG00000221994|Q2M218-2|ZNF630	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3301391601562	2	567.330539	1132.64652	0.053871	3.0563E-05	-0.83373	-0.000473	-0.77986	-0.00044244	567.3299406004519	88.124	1.3605	87.986	87.038	88.398	-0.13744					93	32	4	0	0	0	1.0148	1	10766	10766		17.365	4.4058	1	1828400	+		66652	28844	46990	47057	71903	71903					0.0855074758567298
RKVCNHPEL	9	Unmodified	_RKVCNHPEL_					0	0	0		INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant;ENSG00000128908|ENST00000648947|INO80	INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	INO80|p.M1145Rfs*30|1|0.09|ENSG00000128908|chr15:41005656-41005656|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.33154296875	2	548.290025	1094.5655	-0.21042	-0.00011537	2.2321	0.0012239	2.0217	0.0011085	548.2909727984571	74.323	0.59079	74.064	73.944	74.535	-0.25887					18	13	2	0	0	0	0.024523	1	9042	9042		21.96	0	1	89077			66653	4319	46991	47058	71904	71904					0.02199723551234456
RKVIYRRKK	9	Unmodified	_RKVIYRRKK_					0	0	0		ENST00000540594.5_1_15:34439399-34502250:-|nuORF;ENST00000562413.2_1_6:147124559-147124826:-|nuORF;ENST00000560671.5_1_15:34440831-34455877:-|nuORF;ENSG00000134152|ENST00000256544|KATNBL1	ENST00000540594.5_1_15:34439399-34502250:-|nuORF	ENST00000540594.5_1_15:34439399-34502250:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.4169921875	2	623.914573	1245.81459	0.93975	0.00058632	2.0306	0.0012669	2.9704	0.0018533	623.9157293580129	107.7	0.30437	107.7	107.55	107.85	0					23	15	2	0	0	0	1.062	1	13828	13828		7.1934	0.45781	1	2190900			66654	16427	46992	47059	71905	71905					0.2015185457012194
RKVKSHTSV	9	Unmodified	_RKVKSHTSV_					0	0	0		chr13:73075063-73075708|175|10.27|0.56|4.2|+|0|None,KLF5|1	chr13:73075063-73075708|175|10.27|0.56|4.2|+|0|None,KLF5|1	chr13:73075063-73075708|175|10.27|0.56|4.2|+|0|None,KLF5|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7687377929688	2	521.311815	1040.60908	-0.015673	-8.1706E-06	2.8935	0.0015084	2.8778	0.0015003	521.313207258332	52.31	0.62033	52.126	51.815	52.435	-0.18404					25	15	2	0	0	0	0.024319	1	5455	5455		47.657	23.455	1	249070			66655	332	46993	47060	71906	71906					0.09039656320032918
RKVLPQLTKHL	11	Unmodified	_RKVLPQLTKHL_					0	0	0			REV__nc|ENSG00000205221|Q6UXI7-2|VIT	REV__nc|ENSG00000205221|Q6UXI7-2|VIT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.25103759765625	3	444.95399	1331.84014	-1.118	-0.00049745	2.1711	0.00096604	1.0531	0.00046859	444.95579973442966	29.149	0.19559	29.149	28.99	29.186	0					6	4	2	0	0	0	0.024759	1	1739	1739		29.551	6.1728	1	72248	+		66656	28667	46994	47061	71907	71907					0.18749284301884472
RKVNPAAAL	9	Unmodified	_RKVNPAAAL_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.29022216796875	2	470.290351	938.566149	-0.64738	-0.00030446	0.54189	0.00025485	-0.10549	-4.9612E-05	470.29056172467494	27.873	1.2832	27.705	27.402	28.686	-0.16816					73	30	5	0	0	0	0.4855	1	1561	1561		60.294	0	1	5857400			66657	6545	46995	47062	71908	71908					0.09440886262598269
RKVPELSSV	9	Unmodified	_RKVPELSSV_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000556277.5_1_14:24034355-24036984:-|nuORF;ENST00000553629.5_1_14:24035015-24036984:-|nuORF;ENST00000465445.6_1_14:24034355-24036327:-|nuORF;ENST00000557619.5_1_14:24035015-24036327:-|nuORF;ENST00000556743.5_1_14:24034808-24036327:-|nuORF;ENST00000460049.6_1_14:24033375-24036327:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7358093261719	2	507.800749	1013.58694	-0.46413	-0.00023569	1.424	0.00072312	0.95988	0.00048743	507.8013798547237	39.849	0.47247	39.624	39.3	39.773	-0.225					15	11	2	0	0	0	0.024021	1	3400	3400		49.442	0	1	145090			66658	10532	46996	47063	71909	71909					0.08069431851617992
RKVVINNSV	9	Unmodified	_RKVVINNSV_					0	0	0		ENST00000556582.5_1_14:75348625-75357926:+|nuORF;ENST00000555071.5_1_14:75348653-75357926:+|nuORF;ENSG00000119689|ENST00000334220|DLST;ENST00000557012.5_1_14:75348653-75356060:+|nuORF;ENST00000444241.1_1_1:76209858-76210371:-|nuORF	ENST00000556582.5_1_14:75348625-75357926:+|nuORF	ENST00000556582.5_1_14:75348625-75357926:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7343139648438	2	514.81419	1027.61383	-0.36112	-0.00018591	-0.029496	-1.5185E-05	-0.39062	-0.00020109	514.8140557001805	41.758	0.37313	41.53	41.434	41.807	-0.2278					14	9	2	0	0	0	0.024539	1	3742	3742		20.947	0	1	163120			66659	3755	46997	47064	71910	71910					0.1011254046279646
RKYAEITK	8	Unmodified	_RKYAEITK_					0	0	0			REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2485656738281	2	504.795466	1007.57638	0.4141	0.00020904	-0.8233	-0.0004156	-0.4092	-0.00020656	504.7940730519179	22.029	0.28385	21.84	21.723	22.007	-0.18894					9	5	2	0	0	0	0.027866	1	739	739		29.15	1.2673	1	37890	+		66660	26090	46998	47065	71911	71911					0.07289449197173781
RKYAEITK	8	Unmodified	_RKYAEITK_					0	0	0			REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	REV__nc|ENSG00000166960|Q5BJE1-3|CCDC178	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.795466	1007.57638	-0.46984	-0.00023717	-1.303	-0.00065772	-1.7728	-0.0008949	505.29696620503347	22.167	0.53054	21.965	21.663	22.194	-0.20199	0.062599	-0.00024076	NaN	29.15	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24069	+		66661	26090	46998	47065							0.07289449197173781
RKYAIEIFIL	10	Unmodified	_RKYAIEIFIL_					0	0	0			REV__nc|ENSG00000176884|Q05586-2|GRIN1	REV__nc|ENSG00000176884|Q05586-2|GRIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.5923767089844	3	422.592058	1264.75434	-0.0027145	-1.1471E-06	1.5578	0.00065831	1.5551	0.00065717	422.5926408147748	49.847	3.7171	49.921	49.316	53.033	0.074196					328	102	6	0	0	0	1.1333	1	5082	5082		28.081	6.3957	1	16177000	+		66662	27052	46999	47066	71912	71912					0.13255699396358978
RKYKQTERDWY	11	Unmodified	_RKYKQTERDWY_					0	0	0			REV__ENST00000484378.1_1_6:31239370-31239848:-|nuORF	REV__ENST00000484378.1_1_6:31239370-31239848:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7877197265625	3	524.935435	1571.78447	-0.53381	-0.00028022	-3.9494	-0.0020732	-4.4832	-0.0023534	524.9336264263544	29.291	0.47517	29.119	28.85	29.325	-0.17258					25	10	3	0	0	0	0.024869	1	1800	1800		16.53	10.209	1	156190	+		66663	28614	47000	47067	71913	71913					0.02145406323620591
RKYKQTERDWY	11	Unmodified	_RKYKQTERDWY_					0	0	0			REV__ENST00000484378.1_1_6:31239370-31239848:-|nuORF	REV__ENST00000484378.1_1_6:31239370-31239848:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	524.935435	1571.78447	-1.1874	-0.00062331	-2.8414	-0.0014916	-4.0288	-0.0021149	524.9339540281088	29.386	0.52002	29.141	28.796	29.316	-0.24524	0.041616	0.0011866	NaN	16.53	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180490	+		66664	28614	47000	47067							0.02145406323620591
RKYLKLKN	8	Unmodified	_RKYLKLKN_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8421020507812	2	531.842751	1061.67095	-0.88284	-0.00046953	0.01078	5.7334E-06	-0.87206	-0.0004638	531.8427301514997	51.466	1.4974	51.318	50.828	52.326	-0.14735					110	41	5	0	0	0	1.0574	1	5458	5458		24.203	0	1	9916600			66665	1880	47001	47068	71914	71914					0.14258007739181267
RKYPTLLEV	9	Unmodified	_RKYPTLLEV_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.831787109375	2	559.832049	1117.64954	-0.010983	-6.1487E-06	-0.3907	-0.00021872	-0.40168	-0.00022487	559.8316841092128	73.054	1.1361	72.773	72.465	73.601	-0.28124					95	28	6	0	0	0	0.2508	1	8887	8887		82.241	2.5279	1	5476200			66666	10202	47002	47069	71915	71915					0.09542577919796713
RLAACPLL	8	Unmodified	_RLAACPLL_					0	0	0		ENST00000372731.8_1_9:131395649-131395727:+|nuORF	ENST00000372731.8_1_9:131395649-131395727:+|nuORF	ENST00000372731.8_1_9:131395649-131395727:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	429.27642822265625	2	428.757298	855.500044	0.012227	5.2423E-06	-3.3785	-0.0014486	-3.3663	-0.0014433	428.7556544303562	42.869	0.46556	42.631	42.452	42.917	-0.23737					18	11	2	0	0	0	0.027866	1	3911	3911		37.028	0	1	167760			66667	13051	47003	47070	71916	71916					0.06651354096197792
RLAAKSTH	8	Unmodified	_RLAAKSTH_					0	0	0		ENST00000571855.1_1_17:48740997-48741507:+|nuORF	ENST00000571855.1_1_17:48740997-48741507:+|nuORF	ENST00000571855.1_1_17:48740997-48741507:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2591247558594	2	442.259051	882.503549	-0.31404	-0.00013888	0.51412	0.00022738	0.20009	8.8491E-05	442.2591233861213	23.597	1.2353	23.597	23.283	24.518	0					71	28	4	0	0	0	1.0198	1	950	950		34.173	3.6689	1	1141300			66668	17049	47004	47071	71917	71917					0.05759740194423557
RLAAKTQSL	9	Unmodified	_RLAAKTQSL_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3006591796875	2	494.300916	986.587279	0.096981	4.7938E-05	-0.41903	-0.00020712	-0.32204	-0.00015919	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.83071	1	11947	11947		37.159	4.3467	1	34796000	+		66669	23585	47005	47072	71918	71918					0.09344851571484014
RLAANQKEL	9	Unmodified	_RLAANQKEL_					0	0	0			REV__ENST00000555795.1_1_14:75988823-76013011:+|nuORF	REV__ENST00000555795.1_1_14:75988823-76013011:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3126831054688	2	521.803823	1041.59309	-1.362	-0.00071068	-3.1867	-0.0016628	-4.5486	-0.0023735	522.3034453005182	91.853	0.58975	91.853	91.511	92.101	0					13	13	2	0	0	0	0.024292	1	11610	11610		68.787	13.283	1	63953	+		66670	25053	47006	47073	71919	71919					0.073959500831279
RLAANQKEL	9	Unmodified	_RLAANQKEL_					0	0	0			REV__ENST00000555795.1_1_14:75988823-76013011:+|nuORF	REV__ENST00000555795.1_1_14:75988823-76013011:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.803823	1041.59309	-1.7746	-0.00092599	1.5827	0.00082587	-0.19188	-0.00010012	521.8043097078073	92	0.13139	91.851	91.785	91.917	-0.1487	-0.0010957	0.0035476	NaN	68.787	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14816	+		66671	25053	47006	47073							0.073959500831279
RLAAPASLLW	10	Unmodified	_RLAAPASLLW_					0	0	0			REV__ENST00000368599.3_1_6:116832965-116833004:+|nuORF	REV__ENST00000368599.3_1_6:116832965-116833004:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.3265380859375	2	549.326934	1096.63931	-0.2303	-0.00012651	-0.25452	-0.00013981	-0.48482	-0.00026633	549.3266754298367	69.012	0.86037	68.782	68.357	69.217	-0.23048					49	20	4	0	0	0	0.67706	1	7998	7998		68.787	2.3575	1	1534900	+		66672	31056	47007	47074	71920	71920					0.09486014985213842
RLADALQEL	9	Unmodified	_RLADALQEL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7901611328125	2	514.790381	1027.56621	-0.33345	-0.00017165	-0.060019	-3.0897E-05	-0.39346	-0.00020255	514.7901584446196	61.547	0.90026	61.547	61.216	62.117	0					55	23	3	0	0	0	0.071379	2	7123	7123;7136		120.87	18.127	1	17470000			66673	6839	47008	47075	71921;71922	71921					0.05352841471949432
RLADALQEL	9	Unmodified	_RLADALQEL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7899169921875	2	514.790381	1027.56621	0.24388	0.00012555	-0.82111	-0.0004227	-0.57722	-0.00029715	514.789799882895	61.791	0.85845	61.564	61.261	62.119	-0.22663					52	22	3	0	0	0	0.15388	2	7133	7133;7146		98.582	19.44	1	15971000			66674	6839	47008	47075	71923;71924	71923					0.05352841471949432
RLADALQEL	9	Unmodified	_RLADALQEL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7901000976562	2	514.790381	1027.56621	-0.45899	-0.00023628	-0.0082585	-4.2514E-06	-0.46725	-0.00024054	514.790130969628	61.458	0.85637	61.53	61.239	62.096	0.071125					52	22	3	0	0	0	0.056725	2	7029	7029;7053		126.24	10.861	1	17971000			66675	6839	47008	47075	71925;71926	71925					0.05352841471949432
RLADALQEL	9	Unmodified	_RLADALQEL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.790381	1027.56621	-0.82946	-0.000427	0.46665	0.00024023	-0.36281	-0.00018677	514.7906319063559	61.649	0.97148	61.471	60.872	61.843	-0.17781	-0.057089	0.00066294	NaN	126.24	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1596600			66676	6839	47008	47075							0.05352841471949432
RLADFLLL	8	Unmodified	_RLADFLLL_					0	0	0			REV__ENSG00000124217|ENST00000244051|MOCS3	REV__ENSG00000124217|ENST00000244051|MOCS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.27490234375	2	480.797478	959.580402	0.19981	9.607E-05	2.8328	0.001362	3.0326	0.0014581	480.79862685857074	39.476	0.86963	39.25	38.946	39.815	-0.2257					40	22	3	0	0	0	0.027866	1	3307	3307		35.201	10.998	1	685430	+		66677	22751	47009	47076	71927	71927					0.09899538690910958
RLADKHTPL	9	Unmodified	_RLADKHTPL_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.806396484375	2	525.806365	1049.59818	-0.052515	-2.7612E-05	-0.43559	-0.00022904	-0.4881	-0.00025665	525.806077861201	46.708	0.58297	46.759	46.441	47.024	0.051395					47	15	4	0	0	0	0.53979	1	4584	4584		56.721	1.9447	1	2199000	+		66678	24799	47010	47077	71928	71928					0.07536253945750104
RLADKSVLV	9	Unmodified	_RLADKSVLV_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant;ENST00000536090.1_1_12:6626539-6627126:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.8104248046875	2	500.811116	999.60768	-1.0533	-0.00052749	0.3842	0.00019241	-0.66907	-0.00033508	500.81121166693873	38.227	0.96635	38.227	37.936	38.902	0					67	26	4	0	0	0	0.48817	1	3188	3188		60.118	5.3536	1	3784600			66679	872	47011	47078	71929	71929					0.10786022231275183
RLAEFNGLL	9	Unmodified	_RLAEFNGLL_					0	0	0			REV__ENST00000464717.5_1_7:154739579-154754102:-|nuORF	REV__ENST00000464717.5_1_7:154739579-154754102:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7957153320312	2	516.795466	1031.57638	-0.80905	-0.00041811	0.87881	0.00045416	0.069761	3.6052E-05	516.795719983409	64.637	0.63634	64.637	64.347	64.983	0					50	16	4	0	0	0	0.43973	1	7635	7635		63.306	7.8021	1	4621200	+		66680	25119	47012	47079	71930	71930					0.06185449197187154
RLAEIREAH	9	Unmodified	_RLAEIREAH_					0	0	0			REV__nc|ENSG00000144395|Q8NCX0-4|CCDC150	REV__nc|ENSG00000144395|Q8NCX0-4|CCDC150	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.326416015625	2	547.806897	1093.59924	-0.63674	-0.00034881	4.3975	0.002409	3.7607	0.0020601	547.8094713276292	41.59	0.52792	41.613	41.29	41.818	0.023006					31	14	4	0	0	0	0.022083	1	3670	3670		99.375	3.1845	1	927860	+		66681	24331	47013	47080	71931	71931					0.056184683146511816
RLAELQEQL	9	Unmodified	_RLAELQEQL_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;BRD3|p.A472G|1|0.17|ENSG00000169925|chr9:134040262-134040262|G/C|missense_variant;ENST00000463639.1_1_6:32945329-32946166:+|nuORF;ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000169925|Q15059-2|BRD3;nc|ENSG00000141867|O60885-2|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000204256|ENST00000374825|BRD2;ENSG00000141867|ENST00000679869|BRD4	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3051147460938	2	550.308938	1098.60332	-0.44229	-0.0002434	0.080393	4.4241E-05	-0.3619	-0.00019916	550.3089011540674	52.255	1.1448	52.255	51.942	53.086	0					73	29	4	0	0	0	0.016953	3	5591	5591;5602;5621		152.06	17.295	1	4204800			66682	10317;5525	47014	47081	71932;71933;71934	71932					0.05796513017708094
RLAELQEQL	9	Unmodified	_RLAELQEQL_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;BRD3|p.A472G|1|0.17|ENSG00000169925|chr9:134040262-134040262|G/C|missense_variant;ENST00000463639.1_1_6:32945329-32946166:+|nuORF;ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000169925|Q15059-2|BRD3;nc|ENSG00000141867|O60885-2|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000204256|ENST00000374825|BRD2;ENSG00000141867|ENST00000679869|BRD4	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3069458007812	2	550.308938	1098.60332	-0.27588	-0.00015182	-0.12231	-6.7308E-05	-0.39819	-0.00021913	550.3087960744335	52.338	1.0355	52.191	51.95	52.985	-0.14735					64	26	4	0	0	0	0.14181	1	5595	5595		101.25	5.4375	1	3971000			66683	10317;5525	47014	47081	71935	71935					0.05796513017708094
RLAELQEQL	9	Unmodified	_RLAELQEQL_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;BRD3|p.A472G|1|0.17|ENSG00000169925|chr9:134040262-134040262|G/C|missense_variant;ENST00000463639.1_1_6:32945329-32946166:+|nuORF;ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000169925|Q15059-2|BRD3;nc|ENSG00000141867|O60885-2|BRD4;ENSG00000169925|ENST00000303407|BRD3;nc|ENSG00000141867|O60885-3|BRD4	ENSG00000204256|ENST00000374825|BRD2;ENSG00000141867|ENST00000679869|BRD4	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.306884765625	2	550.308938	1098.60332	-0.75794	-0.0004171	0.46246	0.00025449	-0.29548	-0.0001626	550.3090695380375	52.196	1.0823	52.288	51.93	53.013	0.091942					62	27	3	0	0	0	0.023452	1	5513	5513		146.79	17.364	1	2160500			66684	10317;5525	47014	47081	71936	71936					0.05796513017708094
RLAETQEEI	9	Unmodified	_RLAETQEEI_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000007392|Q9NQ29-2|LUC7L;nc|ENSG00000007392|Q9NQ29-3|LUC7L;ENSG00000007392|ENST00000293872|LUC7L;ENST00000490762.5_1_16:240794-277276:-|nuORF	nc|ENSG00000164898|Q96HJ9-2|FMC1;nc|ENSG00000007392|Q9NQ29-2|LUC7L	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.78271484375	2	544.782753	1087.55095	-1.31	-0.00071366	0.44414	0.00024196	-0.86585	-0.0004717	544.782937404313	38.575	1.7161	38.575	38.199	39.915	0					111	47	5	0	0	0	0.013719	4	3253	3233;3241;3253;3266		168.26	42.444	1	12028000			66685	18459;820	47015	47082	71937;71938;71939;71940	71939					0.010679298841068885
RLAETQEEI	9	Unmodified	_RLAETQEEI_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000007392|Q9NQ29-2|LUC7L;nc|ENSG00000007392|Q9NQ29-3|LUC7L;ENSG00000007392|ENST00000293872|LUC7L;ENST00000490762.5_1_16:240794-277276:-|nuORF	nc|ENSG00000164898|Q96HJ9-2|FMC1;nc|ENSG00000007392|Q9NQ29-2|LUC7L	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7828369140625	2	544.782753	1087.55095	-1.1994	-0.00065341	0.28931	0.00015761	-0.91009	-0.0004958	544.7828875496944	38.553	1.3099	38.471	38.083	39.393	-0.082516					98	35	4	0	0	0	0.016249	4	3217	3207;3217;3229;3241		155.58	33.409	1	11580000			66686	18459;820	47015	47082	71941;71942;71943;71944	71942					0.010679298841068885
RLAETQEEI	9	Unmodified	_RLAETQEEI_					0	0	0		nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000007392|Q9NQ29-2|LUC7L;nc|ENSG00000007392|Q9NQ29-3|LUC7L;ENSG00000007392|ENST00000293872|LUC7L;ENST00000490762.5_1_16:240794-277276:-|nuORF	nc|ENSG00000164898|Q96HJ9-2|FMC1;nc|ENSG00000007392|Q9NQ29-2|LUC7L	nc|ENSG00000164898|Q96HJ9-2|FMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7823486328125	2	544.782753	1087.55095	-2.0237	-0.0011025	1.0895	0.00059355	-0.93416	-0.00050892	544.7832844598319	38.741	1.3097	38.768	38.365	39.674	0.027275					102	35	5	0	0	0	0.016249	5	3208	3198;3208;3220;3232;3247		155.58	44.744	1	11232000			66687	18459;820	47015	47082	71945;71946;71947;71948;71949	71946					0.010679298841068885
RLAGEAFAPW	10	Unmodified	_RLAGEAFAPW_					0	0	0			REV__ENST00000310160.7_1_19:49254269-49255823:-|nuORF	REV__ENST00000310160.7_1_19:49254269-49255823:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.8173217773438	2	559.293091	1116.57163	-1.2272	-0.00068636	1.1986	0.00067035	-0.028618	-1.6006E-05	559.2935321215749	37.877	0.29263	37.659	37.463	37.755	-0.21849					10	7	2	0	0	0	0.03519	1	3073	3073		34.173	14.813	1	65042	+		66688	30179	47016	47083	71950	71950					0.018005650544182572
RLAKRLAGT	9	Unmodified	_RLAKRLAGT_					0	0	0			REV__ENST00000571710.5_1_17:1945329-1945866:+|nuORF	REV__ENST00000571710.5_1_17:1945329-1945866:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7861022949219	2	493.3169	984.619247	1.1074	0.00054631	2.3591	0.0011638	3.4665	0.0017101	493.3179688111247	51.565	0.45849	51.381	51.14	51.598	-0.18405					19	11	2	0	0	0	0.024319	1	5323	5323		47.657	0	1	186550	+		66689	35412	47017	47084	71951	71951					0.12632264045259944
RLALEAEKV	9	Unmodified	_RLALEAEKV_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.8046264648438	2	514.808574	1027.60259	-0.70112	-0.00036094	1.3695	0.00070504	0.6684	0.0003441	514.8086539893243	48.001	0.76514	48.001	47.717	48.482	0					55	22	4	0	0	0	0.31037	1	4865	4865		74.255	0	1	3500400			66690	6370	47018	47085	71952	71952					0.0898971836866167
RLALEAEKV	9	Unmodified	_RLALEAEKV_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.8019409179688	2	514.808574	1027.60259	-0.68859	-0.00035449	1.2898	0.00066402	0.60124	0.00030952	514.8086139995844	48.155	0.69603	48.002	47.702	48.398	-0.15301					60	20	4	0	0	0	0.42604	1	4858	4858		64.207	2.0999	1	3699400			66691	6370	47018	47085	71953	71953					0.0898971836866167
RLALEAEKV	9	Unmodified	_RLALEAEKV_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.8045654296875	2	514.808574	1027.60259	-1.04	-0.00053542	1.6771	0.00086341	0.6371	0.00032799	514.808731310705	47.867	0.71643	47.93	47.618	48.335	0.06242					57	20	4	0	0	0	0.31037	1	4790	4790		74.255	0	1	3405900			66692	6370	47018	47085	71954	71954					0.0898971836866167
RLALGRLGR	9	Unmodified	_RLALGRLGR_					0	0	0		nc|ENSG00000173349|Q587I9|SFT2D3	REV__ENST00000416649.6_1_3:48711880-48711955:-|nuORF	REV__ENST00000416649.6_1_3:48711880-48711955:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7561340332031	2	506.330342	1010.64613	-0.56594	-0.00028655	0.7925	0.00040127	0.22656	0.00011471	506.33144368901844	34.626	0.5085	34.622	34.375	34.883	-0.0045624					28	12	3	0	0	0	0.024541	1	2588	2588		24.203	0	1	167100			66693	18523	47019	47086	71955	71955					0.14123372656467836
RLALLQVRAIL	11	Unmodified	_RLALLQVRAIL_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5926208496094	3	422.618718	1264.83433	-0.05002	-2.114E-05	-0.25098	-0.00010607	-0.301	-0.00012721	422.61874518058283	50.381	0.1891	50.23	50.065	50.254	-0.1512					7	5	2	0	0	0	0.02483	1	5241	5241		5.4129	3.9942	1	99129			66694	6538	47020	47087	71956	71956					0.21250185790245268
RLALNRPVD	9	Unmodified	_RLALNRPVD_					0	0	0			REV__ENST00000608113.1_1_2:55845077-55845233:+|nuORF	REV__ENST00000608113.1_1_2:55845077-55845233:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3115234375	2	527.311815	1052.60908	-1.6729	-0.00088211	1.1404	0.00060134	-0.53247	-0.00028078	527.3123118984294	20.396	0.77255	20.396	20.078	20.85	0					42	15	4	0	0	0	0.85329	1	525	525		35.618	0	1	661110	+		66695	35964	47021	47088	71957	71957					0.08487656320039605
RLALVQRVE	9	Unmodified	_RLALVQRVE_					0	0	0			REV__nc|ENSG00000103051|Q9H9E3-3|COG4	REV__nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.82666015625	2	542.33529	1082.65603	-0.7584	-0.00041131	-0.090077	-4.8852E-05	-0.84848	-0.00046016	542.3352462004126	53.214	1.0053	53.214	52.901	53.907	0					44	27	3	0	0	0	0.024354	1	5793	5793		47.916	10.756	1	4189400	+		66696	21351	47022	47089	71958	71958					0.1180051587118669
RLAMEETF	8	Unmodified	_RLAMEETF_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7667236328125	2	498.744585	995.474617	-0.21347	-0.00010647	-1.5603	-0.00077817	-1.7737	-0.00088463	498.7438157394327	41.562	0.14865	41.427	41.294	41.443	-0.13553					5	3	2	0	0	0	0.027866	1	3682	3682		79.939	0	1	144420			66697	10139	47023	47090	71959	71959					-0.023301652168811415
RLAPLPRAV	9	Unmodified	_RLAPLPRAV_					0	0	0			REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2535400390625	2	496.821818	991.629084	0.038151	1.8954E-05	-0.26817	-0.00013323	-0.23001	-0.00011428	496.82162976248225	49.878	0.583	49.727	49.482	50.065	-0.1512					23	15	2	0	0	0	0.024541	1	5117	5117		11.511	3.8207	1	258120	+		66698	37815	47024	47091	71960	71960					0.13293452050641008
RLAPLPRAV	9	Unmodified	_RLAPLPRAV_					0	0	0			REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.821818	991.629084	0.47136	0.00023418	-0.63661	-0.00031628	-0.16525	-8.21E-05	496.8214623095962	49.63	0.47881	49.63	49.399	49.878	0	-0.040845	-0.00048376	NaN	11.511	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198350	+		66699	37815	47024	47091							0.13293452050641008
RLAPLPRAV	9	Unmodified	_RLAPLPRAV_					0	0	0			REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	REV__ZNF648|p.Q480Sfs*12|1|0.11|ENSG00000179930|chr1:182056574-182056574|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.821818	991.629084	-0.90095	-0.00044761	0.53836	0.00026747	-0.36259	-0.00018014	496.8219501594017	49.581	0.55997	49.655	49.352	49.912	0.074196	-0.015468	0.00068374	NaN	11.511	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232600	+		66700	37815	47024	47091							0.13293452050641008
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.81396484375	2	550.81419	1099.61383	-1.441	-0.00079374	-0.39358	-0.00021679	-1.8346	-0.0010105	550.8141123712936	38.122	1.4873	38.122	37.836	39.323	0					97	41	5	0	0	0	0.17822	6	3200	3153;3162;3174;3186;3200;3215		93.195	45.28	1	51948000			66701	7574	47025	47092	71961;71962;71963;71964;71965;71966	71965					0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.8139038085938	2	550.81419	1099.61383	-1.4004	-0.00077135	-0.34333	-0.00018911	-1.7437	-0.00096046	550.8141193953502	38.048	1.5448	37.966	37.671	39.215	-0.082512					114	42	5	0	0	0	0.16468	6	3190	3127;3139;3151;3164;3177;3190		96.19	38.379	1	47348000			66702	7574	47025	47092	71967;71968;71969;71970;71971;71972	71972					0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.8130493164062	2	550.81419	1099.61383	-2.0443	-0.001126	0.73067	0.00040246	-1.3136	-0.00072358	550.8147133856736	38.291	1.4709	38.318	38.023	39.494	0.027275					115	40	5	0	0	0	0.19099	8	3130	3120;3130;3142;3154;3166;3179;3193;3206		90.37	35.334	1	44065000			66703	7574	47025	47092	71973;71974;71975;71976;71977;71978;71979;71980	71974					0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.81419	1099.61383	-0.70478	-0.0003882	1.0661	0.00058722	0.36132	0.00019902	550.8146080874228	38.113	0.46162	37.934	37.775	38.237	-0.17929	-0.12333	0.00078454	NaN	96.19	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615540			66704	7574	47025	47092							0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.81419	1099.61383	-0.83796	-0.00046156	0.97334	0.00053613	0.13538	7.4571E-05	550.814600917138	38.216	0.45881	37.994	37.797	38.256	-0.22148	-0.062951	0.00068236	NaN	96.19	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	903380			66705	7574	47025	47092							0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.81419	1099.61383	-0.69123	-0.00038074	0.84893	0.0004676	0.15769	8.6859E-05	550.814473422281	38.227	0.42588	38.009	37.792	38.218	-0.21848	-0.048487	0.0005453	NaN	96.19	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	752080			66706	7574	47025	47092							0.06800540462791105
RLAQTLNLI	9	Unmodified	_RLAQTLNLI_					0	0	0			REV__ENSG00000038210|ENST00000264864|PI4K2B	REV__ENSG00000038210|ENST00000264864|PI4K2B	MSMS	OPSCC_39_ClassI_Rep-2	2	521.3245239257812	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.736	1	49.585	49.085	50.085	-0.1512								0	0	0	0.1093	1	5131	5131		90.37	8.1293	1		+		66707	20074	47026	47093	71981	71981					0.11553711122610366
RLAQTLNLI	9	Unmodified	_RLAQTLNLI_					0	0	0			REV__ENSG00000038210|ENST00000264864|PI4K2B	REV__ENSG00000038210|ENST00000264864|PI4K2B	MSMS	OPSCC_39_ClassI_Rep-3	3	521.3247680664062	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.535	1	49.609	49.109	50.109	0.074196								0	0	0	0.1574	1	5057	5057		79.713	5.4575	1		+		66708	20074	47026	47093	71982	71982					0.11553711122610366
RLARTSFDKN	10	Unmodified	_RLARTSFDKN_					0	0	0		ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF;ENST00000519858.1_1_8:59513803-59535956:-|nuORF	ENSG00000035681|ENST00000038176|NSMAF	ENSG00000035681|ENST00000038176|NSMAF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.2068786621094	3	403.222916	1206.64692	0.56762	0.00022888	-4.4017	-0.0017749	-3.8341	-0.001546	403.22159694536407	35.218	0.21382	35.218	35.129	35.343	0					7	5	2	0	0	0	0.03519	1	2679	2679		42.338	14.257	1	69241			66709	1033	47027	47094	71983	71983					0.05186122514851377
RLASHRDKVL	10	Unmodified	_RLASHRDKVL_					0	0	0			REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4	REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4	MSMS	OPSCC_39_ClassI_Rep-2	2	597.8563232421875	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.599	1	17.457	16.957	17.957	-0.14278								0	0	0	0.77104	1	177	177		19.104	1.7386	1		+		66710	22727	47028	47095	71984	71984					0.11018705648461946
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	501.78277587890625	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.152	1	44.152	43.652	44.652	0								0	0	0	0.026738	1	4191	4191		120.87	38.563	1				66711	13590	47029	47096	71985	71985					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	501.78314208984375	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.211	1	44.211	43.711	44.711	0								0	0	0	0.023134	1	4202	4202		126.24	35.873	1				66712	13590	47029	47096	71986	71986					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	501.7827453613281	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.276	1	44.276	43.776	44.776	0								0	0	0	0.023134	1	4214	4214		126.24	41.082	1				66713	13590	47029	47096	71987	71987					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	501.7823181152344	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.343	1	44.343	43.843	44.843	0								0	0	0	0.026738	1	4226	4226		120.87	41.156	1				66714	13590	47029	47096	71988	71988					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	501.7821350097656	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.421	1	44.421	43.921	44.921	0								0	0	0	0.036569	1	4240	4240		114.89	27.198	1				66715	13590	47029	47096	71989	71989					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	501.78240966796875	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.496	1	44.496	43.996	44.996	0								0	0	0	0.1093	1	4253	4253		90.37	23.941	1				66716	13590	47029	47096	71990	71990					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	501.7831115722656	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.277	1	44.132	43.632	44.632	-0.14471								0	0	0	0.39148	1	4191	4191		62.107	12.083	1				66717	13590	47029	47096	71991	71991					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	501.7825012207031	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.335	1	44.19	43.69	44.69	-0.14471								0	0	0	0.018764	1	4202	4202		132.76	36.943	1				66718	13590	47029	47096	71992	71992					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	501.7827453613281	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.396	1	44.252	43.752	44.752	-0.14471								0	0	0	0.026738	1	4213	4213		120.87	35.953	1				66719	13590	47029	47096	71993	71993					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	501.7825622558594	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.462	1	44.317	43.817	44.817	-0.14471								0	0	0	0.026738	1	4225	4225		120.87	33.114	1				66720	13590	47029	47096	71994	71994					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	501.7817687988281	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.53	1	44.384	43.884	44.884	-0.14566								0	0	0	0.019529	1	4237	4237		131.62	43.862	1				66721	13590	47029	47096	71995	71995					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	501.7826232910156	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.608	1	44.459	43.959	44.959	-0.1488								0	0	0	0.035202	1	4252	4252		115.49	38.72	1				66722	13590	47029	47096	71996	71996					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	501.7830505371094	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.167	1	44.204	43.704	44.704	0.0369								0	0	0	0.51283	1	4133	4133		51.193	3.5354	1				66723	13590	47029	47096	71997	71997					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	501.7828063964844	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.226	1	44.263	43.763	44.763	0.0369								0	0	0	0.1192	1	4144	4144		88.177	18.549	1				66724	13590	47029	47096	71998	71998					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	501.7818298339844	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.292	1	44.329	43.829	44.829	0.0369								0	0	0	0.036569	1	4156	4156		114.89	24.525	1				66725	13590	47029	47096	71999	71999					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	501.7823181152344	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.363	1	44.4	43.9	44.9	0.0369								0	0	0	0.014348	1	4168	4168		150.36	43.354	1				66726	13590	47029	47096	72000	72000					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	501.782470703125	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.435	1	44.472	43.972	44.972	0.0369								0	0	0	0.07376	1	4181	4181		98.582	27.286	1				66727	13590	47029	47096	72001	72001					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	ENST00000397281.6_1_7:150065961-150066789:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	501.7825927734375	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.51	1	44.547	44.047	45.047	0.0369								0	0	0	0.084717	1	4195	4195		95.815	18.969	1				66728	13590	47029	47096	72002	72002					0.04984554954910436
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.3109436035156	2	505.311284	1008.60801	-0.65874	-0.00033287	0.10764	5.4393E-05	-0.55109	-0.00027847	505.31127657292905	48.327	1.5047	48.327	48.003	49.508	0					101	42	5	0	0	0	0.67687	2	4906	4906;4917		47.657	13.485	1	8412400			66729	456;1424	47030	47097	72003;72004	72003					0.10405441951138528
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3112487792969	2	505.311284	1008.60801	-0.6388	-0.00032279	0.1796	9.0756E-05	-0.45919	-0.00023204	505.3113234396928	48.502	1.6091	48.35	48.023	49.632	-0.15276					92	44	4	0	0	0	0.67687	1	4923	4923		47.657	0	1	6450700			66730	456;1424	47030	47097	72005	72005					0.10405441951138528
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3110046386719	2	505.311284	1008.60801	-0.33267	-0.0001681	-0.24463	-0.00012361	-0.5773	-0.00029172	505.31106159973683	48.216	1.4876	48.283	47.97	49.458	0.066795					87	40	4	0	0	0	0.67687	1	4847	4847		47.657	4.0313	1	6889200			66731	456;1424	47030	47097	72006	72006					0.10405441951138528
RLASVAQEL	9	Unmodified	_RLASVAQEL_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7855224609375	2	493.785099	985.555644	-0.080484	-3.9742E-05	-0.37168	-0.00018353	-0.45216	-0.00022327	493.78488660521674	47.543	1.9952	47.543	47.181	49.176	0					103	58	3	0	0	0	0.042502	3	4790	4762;4772;4790		131.62	36.064	1	14148000			66732	185	47031	47098	72007;72008;72009	72009					0.06228858817530636
RLASVAQEL	9	Unmodified	_RLASVAQEL_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.78509521484375	2	493.785099	985.555644	-0.12783	-6.312E-05	-0.31714	-0.0001566	-0.44497	-0.00021972	493.7849078448838	47.709	1.95	47.556	47.231	49.181	-0.15301					124	56	5	0	0	0	0.050291	2	4779	4763;4779		128.6	27.35	1	13587000			66733	185	47031	47098	72010;72011	72011					0.06228858817530636
RLASVAQEL	9	Unmodified	_RLASVAQEL_					0	0	0		BICD2-IPPK|1|fusion;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	BICD2-IPPK|1|fusion	BICD2-IPPK|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7848815917969	2	493.785099	985.555644	-0.91072	-0.0004497	0.34235	0.00016905	-0.56837	-0.00028065	493.78525756043325	47.479	1.8335	47.538	47.247	49.081	0.059097					113	52	6	0	0	0	0.10482	2	4716	4716;4728		109.44	18.838	1	16791000			66734	185	47031	47098	72012;72013	72012					0.06228858817530636
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000186395|ENST00000269576|KRT10;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;CON__P13645;CON__P19001;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;KRT9|p.L227Tfs*5|1|0.06|ENSG00000171403|chr17:41570179-41570188|GTCCAGGAGA/-|frameshift_variant;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENSG00000171403|ENST00000246662|KRT9;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P19012;CON__Q9QWL7;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8050537109375	2	532.808574	1063.60259	-1.2334	-0.00065719	-3.5164	-0.0018735	-4.7498	-0.0025307	532.8063947210859	45.953	1.7947	45.802	45.578	47.372	-0.15157					119	49	4	0	0	0	0.053401	1	4502	4502		127.46	39.765	1	43220000		+	66735	524;514;573;502;15498;511;530;13640	47032	47099	72014	72014					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000186395|ENST00000269576|KRT10;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;CON__P13645;CON__P19001;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;KRT9|p.L227Tfs*5|1|0.06|ENSG00000171403|chr17:41570179-41570188|GTCCAGGAGA/-|frameshift_variant;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENSG00000171403|ENST00000246662|KRT9;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P19012;CON__Q9QWL7;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.8078002929688	2	532.808574	1063.60259	-0.5042	-0.00026864	-3.4105	-0.0018171	-3.9147	-0.0020858	532.8066910865559	45.874	1.6571	45.92	45.753	47.41	0.046093					79	46	2	0	0	0	0.025498	2	4438	4438;4451		145.16	32.745	1	43276000		+	66736	524;514;573;502;15498;511;530;13640	47032	47099	72015;72016	72015					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000186395|ENST00000269576|KRT10;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;CON__P13645;CON__P19001;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;KRT9|p.L227Tfs*5|1|0.06|ENSG00000171403|chr17:41570179-41570188|GTCCAGGAGA/-|frameshift_variant;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENSG00000171403|ENST00000246662|KRT9;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P19012;CON__Q9QWL7;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.8085327148438	2	532.808574	1063.60259	-0.14498	-7.7247E-05	-2.2931	-0.0012218	-2.4381	-0.001299	532.8072054890515	45.784	2.6809	45.687	45.359	48.04	-0.096653					185	73	5	0	0	0	0.030064	4	4378	4354;4366;4378;4390		141.52	34.513	1	72845000		+	66737	524;514;573;502;15498;511;530;13640	47032	47099	72017;72018;72019;72020	72019					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000186395|ENST00000269576|KRT10;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;CON__P13645;CON__P19001;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;KRT9|p.L227Tfs*5|1|0.06|ENSG00000171403|chr17:41570179-41570188|GTCCAGGAGA/-|frameshift_variant;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENSG00000171403|ENST00000246662|KRT9;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P19012;CON__Q9QWL7;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.8079223632812	2	532.808574	1063.60259	-0.67356	-0.00035888	-1.847	-0.0009841	-2.5206	-0.001343	532.8074555833297	46.016	2.2945	45.754	45.35	47.644	-0.26118					184	62	5	0	0	0	0.025498	4	4419	4383;4395;4407;4419		145.16	40.409	1	64307000		+	66738	524;514;573;502;15498;511;530;13640	47032	47099	72021;72022;72023;72024	72024					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;CON__P08730-1;KRT14|p.I239Kfs*11|1|0.05|ENSG00000186847|chr17:41584306-41584307|-/TCTGCATCTCCAGGTCAGCT|frameshift_variant;ENSG00000186395|ENST00000269576|KRT10;ENSG00000187242|ENST00000251643|KRT12;CON__Q99456;CON__P13645;CON__P19001;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;KRT9|p.L227Tfs*5|1|0.06|ENSG00000171403|chr17:41570179-41570188|GTCCAGGAGA/-|frameshift_variant;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19012;ENSG00000171346|ENST00000254043|KRT15;CON__A2A4G1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENSG00000171403|ENST00000246662|KRT9;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P02533;ENSG00000171345|ENST00000361566|KRT19;CON__P19012;CON__Q9QWL7;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P05784;CON__P35527;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P19012	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.8076171875	2	532.808574	1063.60259	-1.0669	-0.00056847	-1.3705	-0.00073019	-2.4374	-0.0012987	532.8077092719012	45.924	2.781	45.722	45.325	48.106	-0.20226					192	76	5	0	0	0	0.038547	4	4389	4365;4377;4389;4401		134.77	41.622	1	71155000		+	66739	524;514;573;502;15498;511;530;13640	47032	47099	72025;72026;72027;72028	72027					0.07333718368658992
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.811279296875	2	546.811648	1091.60874	-0.42913	-0.00023465	-0.68311	-0.00037353	-1.1122	-0.00060819	546.8113131361624	46.54	2.0513	46.54	45.986	48.037	0					148	58	6	0	0	0	0.087669	7	4621	4586;4598;4610;4621;4633;4647;4660		114.89	43.049	1	25225000			66740	3084	47033	47100	72029;72030;72031;72032;72033;72034;72035	72032					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8111572265625	2	546.811648	1091.60874	-1.1752	-0.00064263	0.052306	2.8602E-05	-1.1229	-0.00061403	546.8117191947541	46.685	2.1597	46.532	46.135	48.295	-0.15301					158	61	5	0	0	0	0.034407	7	4593	4583;4593;4604;4615;4627;4639;4653		138.06	44.867	1	25791000			66741	3084	47033	47100	72036;72037;72038;72039;72040;72041;72042	72037					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	OPSCC_39_ClassI_Rep-3	3	546.8109741210938	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.446	1	46.497	45.997	46.997	0.051395								0	0	0	0.036569	1	4534	4534		114.89	32.654	1				66742	3084	47033	47100	72043	72043					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	OPSCC_39_ClassI_Rep-3	3	546.810791015625	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.516	1	46.568	46.068	47.068	0.051395								0	0	0	0.036569	1	4546	4546		114.89	18.704	1				66743	3084	47033	47100	72044	72044					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	OPSCC_39_ClassI_Rep-3	3	546.8109130859375	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.588	1	46.639	46.139	47.139	0.051395								0	0	0	0.02992	1	4558	4558		117.81	41.037	1				66744	3084	47033	47100	72045	72045					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	OPSCC_39_ClassI_Rep-3	3	546.8111572265625	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.659	1	46.711	46.211	47.211	0.051395								0	0	0	0.13964	1	4570	4570		83.647	11.77	1				66745	3084	47033	47100	72046	72046					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MSMS	OPSCC_39_ClassI_Rep-3	3	546.811767578125	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.81	1	46.862	46.362	47.362	0.051395								0	0	0	0.16821	1	4594	4594		77.318	16.346	1				66746	3084	47033	47100	72047	72047					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.811648	1091.60874	-0.16495	-9.0194E-05	-0.11108	-6.0738E-05	-0.27602	-0.00015093	546.8109677504048	46.444	0.78204	46.347	46.078	46.86	-0.096649	-0.1239	0.00029975	NaN	138.06	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2003400			66747	3084	47033	47100							0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.811648	1091.60874	-0.16154	-8.8334E-05	-0.10594	-5.7928E-05	-0.26748	-0.00014626	546.8110814773034	46.814	0.74544	46.544	46.267	47.013	-0.26939	0.073151	0.00030537	NaN	138.06	60	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2943000			66748	3084	47033	47100							0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.811648	1091.60874	-0.93017	-0.00050863	0.25159	0.00013757	-0.67858	-0.00037106	546.81141762792	46.585	0.94819	46.392	45.975	46.923	-0.19387	-0.079517	0.00069637	NaN	138.06	60	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3360700			66749	3084	47033	47100							0.06660236600191638
RLASYLEKV	9	Unmodified	_RLASYLEKV_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT23|p.R91C|1|0.17|ENSG00000108244|chr17:40936333-40936333|G/A|missense_variant;ENSG00000204889|ENST00000377755|KRT40;CON__Q497I4;CON__Q8IUT8;CON__Q6IFU5;CON__Q9C075;ENSG00000108244|ENST00000209718|KRT23;CON__Q15323;CON__Q9UE12;ENSG00000094796|ENST00000251645|KRT31;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009	CON__P13646-1;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	CON__P13646-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8158569335938	2	539.816399	1077.61824	-0.61221	-0.00033048	-0.3651	-0.00019709	-0.97731	-0.00052757	539.8162356681323	45.472	2.6926	45.372	45.048	47.741	-0.099449					187	74	6	0	0	0	0.014034	8	4306	4285;4294;4306;4318;4330;4342;4355;4368		166.68	58.404	1	70472000		+	66750	493;495	47034	47101	72048;72049;72050;72051;72052;72053;72054;72055	72050					0.0825400488570267
RLASYLEKV	9	Unmodified	_RLASYLEKV_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT23|p.R91C|1|0.17|ENSG00000108244|chr17:40936333-40936333|G/A|missense_variant;ENSG00000204889|ENST00000377755|KRT40;CON__Q497I4;CON__Q8IUT8;CON__Q6IFU5;CON__Q9C075;ENSG00000108244|ENST00000209718|KRT23;CON__Q15323;CON__Q9UE12;ENSG00000094796|ENST00000251645|KRT31;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009	CON__P13646-1;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	CON__P13646-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.81640625	2	539.816399	1077.61824	-0.41259	-0.00022272	-0.59155	-0.00031933	-1.0041	-0.00054205	539.8161215744426	45.661	3.6537	45.408	45.055	48.709	-0.25252					242	100	8	0	0	0	0.015512	8	4323	4303;4311;4323;4335;4347;4359;4372;4385		159.28	57.675	1	72785000		+	66751	493;495	47034	47101	72056;72057;72058;72059;72060;72061;72062;72063	72058					0.0825400488570267
RLASYLEKV	9	Unmodified	_RLASYLEKV_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT23|p.R91C|1|0.17|ENSG00000108244|chr17:40936333-40936333|G/A|missense_variant;ENSG00000204889|ENST00000377755|KRT40;CON__Q497I4;CON__Q8IUT8;CON__Q6IFU5;CON__Q9C075;ENSG00000108244|ENST00000209718|KRT23;CON__Q15323;CON__Q9UE12;ENSG00000094796|ENST00000251645|KRT31;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009	CON__P13646-1;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	CON__P13646-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8157958984375	2	539.816399	1077.61824	-1.5343	-0.00082826	0.57909	0.0003126	-0.95525	-0.00051566	539.8167492006414	45.605	3.1101	45.402	45.031	48.141	-0.20226					223	86	6	0	0	0	0.016542	8	4323	4300;4311;4323;4335;4347;4360;4372;4387		154.12	54.743	1	77986000		+	66752	493;495	47034	47101	72064;72065;72066;72067;72068;72069;72070;72071	72066					0.0825400488570267
RLASYLEKV	9	Unmodified	_RLASYLEKV_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT23|p.R91C|1|0.17|ENSG00000108244|chr17:40936333-40936333|G/A|missense_variant;ENSG00000204889|ENST00000377755|KRT40;CON__Q497I4;CON__Q8IUT8;CON__Q6IFU5;CON__Q9C075;ENSG00000108244|ENST00000209718|KRT23;CON__Q15323;CON__Q9UE12;ENSG00000094796|ENST00000251645|KRT31;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009	CON__P13646-1;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	CON__P13646-1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	539.816399	1077.61824	-0.77835	-0.00042017	-0.98218	-0.0005302	-1.7605	-0.00095036	539.8157256116305	45.443	0.84382	45.443	45.246	46.09	0	-0.0017561	-0.00073465	NaN	166.68	53	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3225200		+	66753	493;495	47034	47101							0.0825400488570267
RLASYLEKV	9	Unmodified	_RLASYLEKV_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT23|p.R91C|1|0.17|ENSG00000108244|chr17:40936333-40936333|G/A|missense_variant;ENSG00000204889|ENST00000377755|KRT40;CON__Q497I4;CON__Q8IUT8;CON__Q6IFU5;CON__Q9C075;ENSG00000108244|ENST00000209718|KRT23;CON__Q15323;CON__Q9UE12;ENSG00000094796|ENST00000251645|KRT31;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009	CON__P13646-1;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	CON__P13646-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	539.816399	1077.61824	-1.1012	-0.00059444	-0.84844	-0.000458	-1.9496	-0.0010524	539.8157657196589	45.602	0.47978	45.451	45.276	45.756	-0.15157	0.0054257	-0.00059025	NaN	166.68	43	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3478700		+	66754	493;495	47034	47101							0.0825400488570267
RLASYLEKV	9	Unmodified	_RLASYLEKV_					0	0	0		CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;CON__ENSEMBL:ENSP00000377550;nc|ENSG00000171401|P13646-3|KRT13;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;KRT23|p.R91C|1|0.17|ENSG00000108244|chr17:40936333-40936333|G/A|missense_variant;ENSG00000204889|ENST00000377755|KRT40;CON__Q497I4;CON__Q8IUT8;CON__Q6IFU5;CON__Q9C075;ENSG00000108244|ENST00000209718|KRT23;CON__Q15323;CON__Q9UE12;ENSG00000094796|ENST00000251645|KRT31;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009	CON__P13646-1;KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	CON__P13646-1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.816399	1077.61824	-0.87091	-0.00047013	-1.0817	-0.00058391	-1.9526	-0.001054	539.8156424047955	45.551	0.84939	45.594	45.311	46.16	0.043877	0.14924	-0.00084208	NaN	166.68	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3353800		+	66755	493;495	47034	47101							0.0825400488570267
RLATQAVVL	9	Unmodified	_RLATQAVVL_					0	0	0		nc|ENSG00000162004|A2IDD5|CCDC78;ENSG00000162004|ENST00000345165|CCDC78;ENST00000466708.5_1_16:774659-776662:-|nuORF;ENST00000485091.5_1_16:772680-775160:-|nuORF;ENST00000463539.5_1_16:774659-775081:-|nuORF	nc|ENSG00000162004|A2IDD5|CCDC78	nc|ENSG00000162004|A2IDD5|CCDC78	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.805908203125	2	485.805834	969.597115	-0.55959	-0.00027185	0.29343	0.00014255	-0.26616	-0.0001293	485.8059209527943	34.494	1.1023	34.494	34.168	35.27	0					75	28	4	0	0	0	0.53979	1	2576	2576		56.721	1.9447	1	4612900			66756	6909	47035	47102	72072	72072					0.11110039576851705
RLATRMEH	8	Unmodified	_RLATRMEH_					0	0	0			REV__ENSG00000203697|ENST00000366872|CAPN8	REV__ENSG00000203697|ENST00000366872|CAPN8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2951965332031	2	507.269093	1012.52363	0.20689	0.00010495	2.3221	0.0011779	2.529	0.0012829	507.27030537822804	18.069	0.29407	17.937	17.762	18.056	-0.13148					10	5	3	0	0	0	0.027866	1	243	243		60.972	21.719	1	20956	+		66757	28537	47036	47103	72073	72073					0.01787167862721617
RLATTGGAVGV	11	Unmodified	_RLATTGGAVGV_					0	0	0			REV__ENST00000328089.10_1_1:9427712-9428249:+|nuORF	REV__ENST00000328089.10_1_1:9427712-9428249:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2903747558594	2	501.290548	1000.56654	0.49826	0.00024977	-0.41943	-0.00021026	0.078831	3.9517E-05	501.29014568622995	88.196	2.1736	88.169	87.814	89.988	-0.027664					89	51	3	0	0	0	1.0344	1	11081	11081		29.17	1.0886	1	939860	+		66758	30428	47037	47104	72074	72074					0.06628261191815454
RLAVTELRG	9	Unmodified	_RLAVTELRG_					0	0	0		ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6	ENSG00000124587|ENST00000304611|PEX6	ENSG00000124587|ENST00000304611|PEX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8052978515625	2	507.806365	1013.59818	-0.60425	-0.00030684	0.89929	0.00045667	0.29504	0.00014982	507.80662406413126	34.517	0.92737	34.517	34.129	35.056	0					52	23	3	0	0	0	0.48817	1	2607	2607		60.118	3.3972	1	3424000			66759	4061	47038	47105	72075	72075					0.09192253945752782
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8246459960938	2	538.826766	1075.63898	-0.96675	-0.00052091	-0.38166	-0.00020565	-1.3484	-0.00072656	538.8265026513567	48.26	2.0111	48.26	47.938	49.949	0					120	56	4	0	0	0	0.077175	5	4904	4882;4893;4904;4915;4927		118.74	44.488	1	19523000			66760	3286	47039	47106	72076;72077;72078;72079;72080	72078					0.1041859526535518
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.824951171875	2	538.826766	1075.63898	-1.073	-0.00057815	-0.50884	-0.00027418	-1.5818	-0.00085233	538.8263755788566	48.407	2.2012	48.254	47.542	49.743	-0.15301					136	62	4	0	0	0	0.077175	4	4921	4899;4910;4921;4935		118.74	30.989	1	18467000			66761	3286	47039	47106	72081;72082;72083;72084	72083					0.1041859526535518
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.8250122070312	2	538.826766	1075.63898	-1.1123	-0.00059933	-0.20701	-0.00011154	-1.3193	-0.00071087	538.8265939376525	48.106	1.9304	48.173	47.903	49.833	0.066795					131	52	5	0	0	0	0.043667	5	4822	4801;4812;4822;4834;4848		131.03	31.047	1	19810000			66762	3286	47039	47106	72085;72086;72087;72088;72089	72087					0.1041859526535518
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.826766	1075.63898	-0.82695	-0.00044558	1.1271	0.00060729	0.30011	0.00016171	538.8271933453043	48.093	0.47707	47.996	47.78	48.257	-0.097553	-0.15193	0.0013989	NaN	131.03	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1450700			66763	3286	47039	47106							0.1041859526535518
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.826766	1075.63898	-1.351	-0.00072793	1.4052	0.00075714	0.054198	2.9203E-05	538.8274077210892	48.413	0.43585	48.137	47.89	48.326	-0.27598	-0.010396	0.0016986	NaN	131.03	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518800			66764	3286	47039	47106							0.1041859526535518
RLAVYIDKV	9	Unmodified	_RLAVYIDKV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.826766	1075.63898	-0.7088	-0.00038192	0.8292	0.00044679	0.12039	6.487E-05	538.8271129273712	48.253	0.47572	48.066	47.787	48.263	-0.18684	-0.081441	0.0010779	NaN	131.03	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1463900			66765	3286	47039	47106							0.1041859526535518
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.829345703125	2	552.82984	1103.64513	-0.15403	-8.5152E-05	-1.169	-0.00064625	-1.323	-0.0007314	552.8292427362085	48.913	2.225	48.913	48.585	50.81	0					157	63	5	0	0	0	0.062622	7	5036	4990;5000;5011;5024;5036;5049;5062		124.08	33.71	1	41692000			66766	6839	47040	47107	72090;72091;72092;72093;72094;72095;72096	72094					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8294677734375	2	552.82984	1103.64513	-0.65329	-0.00036116	-0.55666	-0.00030774	-1.2099	-0.0006689	552.8295806071535	49.101	2.1432	48.948	48.611	50.754	-0.15277					158	60	5	0	0	0	0.048057	7	5035	5000;5011;5023;5035;5047;5060;5073		129.42	33.231	1	39823000			66767	6839	47040	47107	72097;72098;72099;72100;72101;72102;72103	72100					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.829833984375	2	552.82984	1103.64513	-0.96307	-0.00053241	-0.24066	-0.00013305	-1.2037	-0.00066546	552.829773590054	48.773	2.5762	48.84	48.519	51.095	0.066799					164	72	5	0	0	0	0.062622	7	4930	4910;4919;4930;4943;4955;4966;4980		124.08	46.763	1	38669000			66768	6839	47040	47107	72104;72105;72106;72107;72108;72109;72110	72106					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.829833984375	2	552.82984	1103.64513	-0.97029	-0.00053641	0.1857	0.00010266	-0.78459	-0.00043375	552.8299071624399	48.845	1.0568	48.745	48.434	49.491	-0.1008					50	27	2	0	0	0	0.094442	3	4876	4865;4876;4888		112.41	27.556	1	8124600			66769	6839	47040	47107	72111;72112;72113	72112					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8295288085938	2	552.82984	1103.64513	-0.42596	-0.00023549	-0.3884	-0.00021472	-0.81436	-0.0004502	552.8296294004067	49.12	1.2278	48.841	48.538	49.766	-0.27977					52	32	2	0	0	0	0.15388	3	4902	4902;4913;4925		98.582	34.375	1	8730600			66770	6839	47040	47107	72114;72115;72116	72114					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.8290405273438	2	552.82984	1103.64513	-0.36567	-0.00020215	-0.44381	-0.00024535	-0.80948	-0.0004475	552.829577800266	48.96	1.0099	48.778	48.484	49.494	-0.18206					43	26	2	0	0	0	0.18994	2	4900	4888;4900		90.601	26.394	1	7593100			66771	6839	47040	47107	72117;72118	72118					0.09745113496887825
RLAWKDQG	8	Unmodified	_RLAWKDQG_					0	0	0		ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3037109375	2	487.264333	972.514114	0.19391	9.4485E-05	4.2686	0.0020799	4.4625	0.0021744	487.26614467553134	47.502	0.4145	47.232	47.013	47.427	-0.26939					17	10	2	0	0	0	0.027866	1	4659	4659		31.955	0	1	126230			66772	16118	47041	47108	72119	72119					0.02675722848857731
RLAYKVDKN	9	Unmodified	_RLAYKVDKN_					0	0	0			REV__ENSG00000280314|ENST00000641662|OR8K3	REV__ENSG00000280314|ENST00000641662|OR8K3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3034057617188	2	553.819473	1105.62439	-0.55515	-0.00030745	1.8265	0.0010115	1.2713	0.00070408	553.8202255020993	36.135	0.20236	36.173	36.065	36.267	0.038044					9	5	3	0	0	0	0.024261	1	2791	2791		64.207	3.2353	1	75384	+		66773	29237	47042	47109	72120	72120					0.07580523117235316
RLCACTKGGE	10	Carbamidomethyl (C)	_RLC(Carbamidomethyl (C))ACTKGGE_	RLC(0.986)AC(0.014)TKGGE		RLC(18)AC(-18)TKGGE		0	1	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3275146484375	2	547.757701	1093.50085	-0.16779	-9.1907E-05	2.5932	0.0014205	2.4255	0.0013286	548.2609348232634	42.279	0.44928	42.279	42.12	42.569	0					20	12	2	0	0	0	0.03519	1	3899	3899		95.815	10.456	2	86000			66774	186;187	47043	47110	72121	72121	2				-0.04216219317049763
RLCARDAFL	9	Unmodified	_RLCARDAFL_					0	0	0		nc|ENSG00000186283|Q9H497-3|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7894287109375	2	532.787118	1063.55968	0.99001	0.00052746	3.947	0.0021029	4.937	0.0026304	532.7892468952358	63.983	1.2106	64.029	63.688	64.899	0.045498					127	32	6	0	0	0	0.50848	1	7521	7521		58.782	2.3482	1	67508000			66775	9535	47044	47111	72122	72122					0.03044625039569837
RLCLALSEV	9	Unmodified	_RLCLALSEV_					0	0	0			REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.28753662109375	2	502.283877	1002.5532	-1.2671	-0.00063645	1.9122	0.00096046	0.64508	0.00032401	502.28481785948037	44.39	1.0273	44.245	43.534	44.561	-0.14471					72	29	4	0	0	0	0.75397	1	4180	4180		42.396	0	1	18960000	+		66776	22348	47045	47112	72123	72123					0.0520268708819458
RLCPLGCS	8	Unmodified	_RLCPLGCS_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.1952209472656	2	424.709491	847.404429	-0.33761	-0.00014339	4.3609	0.0018521	4.0233	0.0017087	424.7095760819111	22.707	0.36485	22.521	22.281	22.646	-0.18539					11	7	2	0	0	0	0.027866	1	834	834		30.504	12.179	1	17414	+		66777	24466	47046	47113	72124	72124					-0.02537742086349226
RLCRVVAE	8	Unmodified	_RLCRVVAE_					0	0	0			REV__ENSG00000101997|ENST00000376227|CCDC22	REV__ENSG00000101997|ENST00000376227|CCDC22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.26922607421875	2	473.268561	944.52257	0.31695	0.00015	-0.48926	-0.00023155	-0.17231	-8.1551E-05	473.2683686828861	26.05	1.4151	26.05	25.694	27.109	0					86	33	5	0	0	0	0.027866	1	1394	1394		38.806	24.142	1	972270	+		66778	21274	47047	47114	72125	72125					0.04808953493818535
RLCRVVAE	8	Unmodified	_RLCRVVAE_					0	0	0			REV__ENSG00000101997|ENST00000376227|CCDC22	REV__ENSG00000101997|ENST00000376227|CCDC22	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	473.268561	944.52257	0.52971	0.0002507	-0.46343	-0.00021933	0.066281	3.1369E-05	473.26809088924654	25.95	0.49496	26.03	25.835	26.33	0.08009	-0.010241	1.1127E-05	NaN	23.042	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666350	+		66779	21274	47047	47114							0.04808953493818535
RLCTPRWR	8	Unmodified	_RLCTPRWR_					0	0	0		ENST00000571514.5_1_16:70504261-70505167:+|nuORF	ENST00000571514.5_1_16:70504261-70505167:+|nuORF	ENST00000571514.5_1_16:70504261-70505167:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8350830078125	2	544.300727	1086.5869	-1.7034	-0.00092714	-1.8599	-0.0010124	-3.5633	-0.0019395	544.2999006533558	51.339	0.45263	51.426	51.227	51.679	0.087006					15	12	2	0	0	0	0.027866	1	5407	5407		53.351	8.9743	1	217000			66780	17038	47048	47115	72126	72126					0.04707153370600281
RLDAVLQRI	9	Unmodified	_RLDAVLQRI_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;ENST00000569161.1_1_15:74315283-74324931:+|nuORF;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.335205078125	2	542.33529	1082.65603	-1.2938	-0.00070166	0.45638	0.00024751	-0.8374	-0.00045415	542.3355622039134	53.275	1.1019	53.128	52.682	53.784	-0.14723					57	29	4	0	0	0	0.28047	1	5723	5723		78.264	0.9462	1	3419900			66781	5414	47049	47116	72127	72127					0.1180051587118669
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2977905273438	2	526.298373	1050.58219	-0.4711	-0.00024794	0.083662	4.4031E-05	-0.38744	-0.00020391	526.2984180381217	55.054	1.2054	55.054	54.757	55.963	0					76	33	4	0	0	0	0.1158	2	6075	6051;6075		107.01	10.926	1	8227000			66782	18628	47050	47117	72128;72129	72129					0.05892547708845086
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.29833984375	2	526.298373	1050.58219	-0.40732	-0.00021437	0.061287	3.2255E-05	-0.34603	-0.00018212	526.2983503107251	55.167	1.0364	55.017	54.711	55.747	-0.15036					77	28	4	0	0	0	0.22902	1	6039	6039		85.161	18.732	1	9588200			66783	18628	47050	47117	72130	72130					0.05892547708845086
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2984619140625	2	526.298373	1050.58219	-0.26402	-0.00013896	-0.067712	-3.5637E-05	-0.33174	-0.00017459	526.2983237200192	54.864	1.1961	54.962	54.66	55.856	0.098015					79	32	4	0	0	0	0.34489	1	5977	5977		69.628	0.8408	1	8576000			66784	18628	47050	47117	72131	72131					0.05892547708845086
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.298373	1050.58219	-0.81496	-0.00042891	0.8369	0.00044046	0.021936	1.1545E-05	526.2986972592711	55.113	0.93492	54.967	54.647	55.582	-0.14609	-0.027821	0.00077316	NaN	107.01	42	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1193700			66785	18628	47050	47117							0.05892547708845086
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.298373	1050.58219	-0.26682	-0.00014043	0.17597	9.2615E-05	-0.090848	-4.7813E-05	526.2982993699283	55.203	0.68364	54.973	54.674	55.357	-0.23087	-0.021884	7.7476E-05	NaN	107.01	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1408100			66786	18628	47050	47117							0.05892547708845086
RLDDAIHVL	9	Unmodified	_RLDDAIHVL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.298373	1050.58219	0.12462	6.5589E-05	-0.27738	-0.00014599	-0.15276	-8.0397E-05	526.2980730357184	55.201	0.69743	54.995	54.648	55.345	-0.20613	0.0004291	-0.00039973	NaN	107.01	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1441500			66787	18628	47050	47117							0.05892547708845086
RLDDLKMTV	9	Unmodified	_RLDDLKMTV_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.7997436523438	2	545.799891	1089.58523	-0.11243	-6.1365E-05	0.30497	0.00016645	0.19253	0.00010509	545.7998440744296	50.591	0.55425	50.479	50.121	50.675	-0.11163					33	14	3	0	0	0	0.33603	1	5149	5149		70.816	14.095	1	2275800			66788	1210	47051	47118	72132	72132					0.0440205477134441
RLDDLKMTV	9	Unmodified	_RLDDLKMTV_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.7999877929688	2	545.799891	1089.58523	0.091261	4.981E-05	0.20085	0.00010963	0.29211	0.00015944	545.7998102123427	50.776	0.44147	50.5	50.299	50.74	-0.27643					33	11	4	0	0	0	0.087669	1	5178	5178		114.89	32.654	1	3129400			66789	1210	47051	47118	72133	72133					0.0440205477134441
RLDDLKMTV	9	Unmodified	_RLDDLKMTV_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.8002319335938	2	545.799891	1089.58523	-0.18309	-9.9932E-05	0.18776	0.00010248	0.0046648	2.546E-06	545.799936426031	50.689	0.62709	50.508	50.133	50.76	-0.18071					29	16	2	0	0	0	0.16539	1	5161	5161		96.034	19.259	1	3319900			66790	1210	47051	47118	72134	72134					0.0440205477134441
RLDDSLLYL	9	Unmodified	_RLDDSLLYL_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3051147460938	2	554.305864	1106.59717	-0.70234	-0.00038931	0.043664	2.4203E-05	-0.65867	-0.00036511	554.3057907641179	75.8	1.4395	75.556	75.153	76.593	-0.24455					96	37	5	0	0	0	0.34489	1	9292	9292		69.628	5.4204	1	9835000			66791	3438	47052	47119	72135	72135					0.04813994786195508
RLDERAQEL	9	Unmodified	_RLDERAQEL_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.3015747070312	2	565.301644	1128.58874	-0.89242	-0.00050449	0.29097	0.00016448	-0.60146	-0.00034	565.301729046857	32.319	0.60908	32.319	32.07	32.679	0					46	15	4	0	0	0	0.22902	1	2241	2241		85.161	4.7062	1	1332700	+		66792	20863	47053	47120	72136	72136					0.02958440869565493
RLDERAQEL	9	Unmodified	_RLDERAQEL_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	565.301644	1128.58874	-0.89242	-0.00050449	0.29097	0.00016448	-0.60146	-0.00034	565.301729046857	32.319	0.60908	32.319	32.07	32.679	0	0.14655	-0.00013241	NaN	85.161	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1332700	+		66793	20863	47053	47120							0.02958440869565493
RLDERAQEL	9	Unmodified	_RLDERAQEL_					0	0	0			REV__ENSG00000089847|ENST00000318934|ANKRD24	REV__ENSG00000089847|ENST00000318934|ANKRD24	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.301644	1128.58874	-1.0245	-0.00057915	0.53441	0.0003021	-0.49009	-0.00027705	565.3018481519863	31.957	0.7028	32.026	31.805	32.508	0.06896	-0.14655	0.00014282	NaN	85.161	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1428200	+		66794	20863	47053	47120							0.02958440869565493
RLDETIQAI	9	Unmodified	_RLDETIQAI_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7955322265625	2	529.795663	1057.57677	-1.0976	-0.00058152	-1.3296	-0.00070441	-2.4272	-0.0012859	529.7960146491122	54.39	1.3138	54.39	54.076	55.39	0					126	37	6	0	0	0	0.16468	2	5943	5943;5956		96.19	11.275	1	8951000			66795	2522	47054	47121	72137;72138	72137					0.05028824126384279
RLDETIQAI	9	Unmodified	_RLDETIQAI_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7957153320312	2	529.795663	1057.57677	-0.34147	-0.00018091	-1.8121	-0.00096005	-2.1536	-0.001141	529.7958734271577	54.522	1.0142	54.371	54.051	55.065	-0.15036					110	28	6	0	0	0	0.14024	2	5936	5936;5950		101.6	8.4052	1	8188000			66796	2522	47054	47121	72139;72140	72139					0.05028824126384279
RLDETIQAI	9	Unmodified	_RLDETIQAI_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7955322265625	2	529.795663	1057.57677	0.53728	0.00028465	-2.91	-0.0015417	-2.3727	-0.0012571	529.7953157578885	54.213	1.175	54.311	53.973	55.148	0.098015					124	33	6	0	0	0	0.19099	1	5845	5845		90.37	5.4543	1	8441800			66797	2522	47054	47121	72141	72141					0.05028824126384279
RLDFAAAEGRE	11	Unmodified	_RLDFAAAEGRE_					0	0	0			REV__nc|ENSG00000167536|Q6UX07-2|DHRS13	REV__nc|ENSG00000167536|Q6UX07-2|DHRS13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.90020751953125	3	412.210676	1233.6102	-0.8479	-0.00034952	0.87729	0.00036163	0.029383	1.2112E-05	412.2112377318412	28.399	1.1161	28.154	27.593	28.709	-0.24524					46	26	3	0	0	0	0.024737	1	1699	1699		40.015	22.547	1	294630	+		66798	26152	47055	47122	72142	72142					0.0027382589828448545
RLDIMVIA	8	Oxidation (M)	_RLDIM(Oxidation (M))VIA_		RLDIM(1)VIA		RLDIM(50)VIA	0	0	1		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5;OR4F4|p.V198Cfs*10|1|0.06|ENSG00000177693|chr15:101922468-101922468|C/-|frameshift_variant	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.77880859375	2	473.773145	945.531738	0.38238	0.00018116	4.4654	0.0021156	4.8478	0.0022967	473.7780080070681	23.205	1.9601	23.205	21.819	23.78	0					143	43	6	0	0	0	0.91239	1	907	907		50.025	7.6284	1	9113200			66799	8661	47056	47123	72143	72143		362			0.05679302059513702
RLDIVHENL	9	Unmodified	_RLDIVHENL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;CDK17|p.K160Lfs*3|1|0.07|ENSG00000059758|chr12:96311118-96311119|-/AGAATAGC|frameshift_variant	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.808837890625	2	554.809105	1107.60366	-0.011727	-6.5061E-06	-1.121	-0.00062193	-1.1327	-0.00062844	554.8084457235108	45.953	0.62358	45.857	45.564	46.187	-0.096649					48	16	4	0	0	0	0.45795	3	4404	4392;4404;4416		62.107	9.8458	1	10141000			66800	1225	47057	47124	72144;72145;72146	72145					0.0541593273756007
RLDIVHENL	9	Unmodified	_RLDIVHENL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;CDK17|p.K160Lfs*3|1|0.07|ENSG00000059758|chr12:96311118-96311119|-/AGAATAGC|frameshift_variant	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.8090209960938	2	554.809105	1107.60366	-0.2987	-0.00016572	-0.87248	-0.00048406	-1.1712	-0.00064978	554.8086076818097	46.207	0.75617	45.946	45.593	46.35	-0.26118					49	15	4	0	0	0	0.31037	3	4426	4401;4413;4426		74.255	16.248	1	9121300			66801	1225	47057	47124	72147;72148;72149	72149					0.0541593273756007
RLDIVHENL	9	Unmodified	_RLDIVHENL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;CDK17|p.K160Lfs*3|1|0.07|ENSG00000059758|chr12:96311118-96311119|-/AGAATAGC|frameshift_variant	nc|ENSG00000059758|Q00537-2|CDK17	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.8086547851562	2	554.809105	1107.60366	-0.92312	-0.00051216	-0.29289	-0.0001625	-1.216	-0.00067466	554.8088772094743	46.049	0.90938	45.847	45.563	46.472	-0.20226					58	24	5	0	0	0	0.32811	3	4407	4395;4407;4420		71.877	17.101	1	9753800			66802	1225	47057	47124	72150;72151;72152	72151					0.0541593273756007
RLDKIMRY	8	Unmodified	_RLDKIMRY_					0	0	0			REV__ENST00000370132.8_1_1:100661637-100661754:-|nuORF	REV__ENST00000370132.8_1_1:100661637-100661754:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.327392578125	2	547.810593	1093.60663	-0.19408	-0.00010632	-3.8119	-0.0020882	-4.006	-0.0021945	547.8083188835182	42.235	1.0787	42.235	41.888	42.967	0					79	30	4	0	0	0	0.027866	1	3812	3812		88.643	0	1	3337500	+		66803	31113	47058	47125	72153	72153					0.0635748459073966
RLDLLVLTHLT	11	Unmodified	_RLDLLVLTHLT_					0	0	0		ENST00000582437.1_1_18:72914218-72920414:-|nuORF	ENST00000582437.1_1_18:72914218-72920414:-|nuORF	ENST00000582437.1_1_18:72914218-72920414:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	647.3980102539062	2	647.398087	1292.78162	0.65018	0.00042092	-1.5562	-0.0010075	-0.90606	-0.00058658	647.3969965372378	52.722	0.58326	52.722	52.391	52.974	0					46	14	4	0	0	0	0.95664	1	5669	5669		46.457	8.6453	1	1563200			66804	17179	47059	47126	72154	72154					0.14694182936750622
RLDLLVLTHLT	11	Unmodified	_RLDLLVLTHLT_					0	0	0		ENST00000582437.1_1_18:72914218-72920414:-|nuORF	ENST00000582437.1_1_18:72914218-72920414:-|nuORF	ENST00000582437.1_1_18:72914218-72920414:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	647.398087	1292.78162	0.47662	0.00030856	-1.6791	-0.0010871	-1.2025	-0.0007785	647.3969107967079	52.527	0.30417	52.618	52.445	52.749	0.091938	-0.038535	0.0002956	NaN	46.457	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151920			66805	17179	47059	47126							0.14694182936750622
RLDMNCTL	8	Unmodified	_RLDMNCTL_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2627258300781	2	483.230787	964.447022	-0.7111	-0.00034362	1.4101	0.00068139	0.69897	0.00033776	483.2302732341956	35.863	0.48816	35.908	35.616	36.105	0.044056					23	12	3	0	0	0	0.027866	1	2717	2717		34.173	0	1	80806			66806	3949	47060	47127	72155	72155					-0.0366239174875318
RLDNASDL	8	Unmodified	_RLDNASDL_					0	0	0			REV__CLEC4F|p.V264A|1|0.26|ENSG00000152672|chr2:70816590-70816590|A/G|missense_variant	REV__CLEC4F|p.V264A|1|0.26|ENSG00000152672|chr2:70816590-70816590|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2301025390625	2	452.230156	902.445759	0.084603	3.826E-05	-0.23754	-0.00010742	-0.15294	-6.9162E-05	452.2299920048317	26.343	0.57254	26.343	26.001	26.573	0					25	13	2	0	0	0	0.42327	1	1328	1328		94.006	5.3636	1	3233800	+		66807	19496	47061	47128	72156	72156					-0.009365665216591879
RLDNDTITI	9	Unmodified	_RLDNDTITI_					0	0	0			REV__ENSG00000232434|ENST00000436881|AJM1	REV__ENSG00000232434|ENST00000436881|AJM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.78515625	2	530.785296	1059.55604	-0.68752	-0.00036493	0.56333	0.00029901	-0.1242	-6.5921E-05	530.7853996784322	53.253	0.87894	53.349	53.092	53.971	0.095669					76	24	4	0	0	0	0.26966	1	5683	5683		79.713	0	1	4615300	+		66808	28904	47062	47129	72157	72157					0.028642337467317702
RLDPCSCVE	9	Unmodified	_RLDPCSCVE_					0	0	0			REV__ENSG00000116711|ENST00000367466|PLA2G4A;REV__ENST00000466600.1_1_1:186823486-186908166:+|nuORF	REV__ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7641906738281	2	511.225702	1020.43685	-1.1657	-0.00059592	2.8193	0.0014413	1.6536	0.00084539	511.2269602091365	25.951	0.52272	25.787	25.457	25.98	-0.16331					23	13	3	0	0	0	0.024405	1	1229	1229		53.351	19.179	1	215020	+		66809	22295;33041	47063	47130	72158	72158					-0.07254999474002943
RLDRQRRWQQR	11	Unmodified	_RLDRQRRWQQR_					0	0	0			REV__ENSG00000128408|ENST00000614167|RIBC2	REV__ENSG00000128408|ENST00000614167|RIBC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8876037597656	4	400.22782	1596.88217	0.23575	9.4352E-05	3.4778	0.0013919	3.7135	0.0014862	400.22910344891824	30.498	0.7462	30.498	30.384	31.131	0					23	17	2	0	0	0	0.024879	1	2001	2001		8.7993	0	1	92078	+		66810	22982	47064	47131	72159	72159					0.10760652762951395
RLDSLTTFY	9	Unmodified	_RLDSLTTFY_					0	0	0			REV__ENSG00000188786|ENST00000373036|MTF1	REV__ENSG00000188786|ENST00000373036|MTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.29248046875	2	558.290214	1114.56587	-0.14545	-8.1204E-05	3.5082	0.0019586	3.3627	0.0018774	558.2919424052994	76.505	1.1825	76.237	75.665	76.848	-0.26807					54	28	3	0	0	0	0.77768	1	9095	9095		40.778	4.3314	1	1694600	+		66811	28065	47065	47132	72160	72160					0.01317421752082737
RLDSLTTFY	9	Unmodified	_RLDSLTTFY_					0	0	0			REV__ENSG00000188786|ENST00000373036|MTF1	REV__ENSG00000188786|ENST00000373036|MTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2927856445312	2	558.290214	1114.56587	0.032574	1.8186E-05	3.3917	0.0018935	3.4242	0.0019117	558.2918253978403	76.44	1.1408	76.188	75.641	76.782	-0.25162					52	27	3	0	0	0	0.67687	1	9084	9084		47.657	1.7054	1	1562000	+		66812	28065	47065	47132	72161	72161					0.01317421752082737
RLDTMKQLL	9	Unmodified	_RLDTMKQLL_					0	0	0			REV__ENSG00000132170|ENST00000651735|PPARG	REV__ENSG00000132170|ENST00000651735|PPARG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.3216552734375	2	559.323534	1116.63251	0.46488	0.00026002	-3.6804	-0.0020585	-3.2155	-0.0017985	559.321376096884	72.642	1.1994	72.361	71.92	73.119	-0.28124					48	29	3	0	0	0	0.12602	1	8810	8810		104.75	5.3716	1	2008000	+		66813	23258	47066	47133	72162	72162					0.07886334042359522
RLDTMKQLL	9	Unmodified	_RLDTMKQLL_					0	0	0			REV__ENSG00000132170|ENST00000651735|PPARG	REV__ENSG00000132170|ENST00000651735|PPARG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.321533203125	2	559.323534	1116.63251	0.65311	0.0003653	-4.0965	-0.0022913	-3.4434	-0.001926	559.3211648457811	72.341	1.0332	72.351	71.953	72.987	0.0097733					47	25	3	0	0	0	0.12602	2	8728	8717;8728		104.75	5.209	1	2507400	+		66814	23258	47066	47133	72163;72164	72164					0.07886334042359522
RLDVKEIQ	8	Unmodified	_RLDVKEIQ_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7926025390625	2	500.792924	999.571294	0.014314	7.1682E-06	-0.28256	-0.0001415	-0.26825	-0.00013434	500.79269802473954	51.856	0.88568	51.737	51.357	52.243	-0.11875					87	23	6	0	0	0	0.62178	1	5351	5351		74.255	2.3776	1	10550000	+		66815	24611;36769	47067	47134	72165	72165					0.07149145334562945
RLDVRLEY	8	Unmodified	_RLDVRLEY_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7462768554688	2	532.298373	1062.58219	-0.1164	-6.196E-05	0.51478	0.00027401	0.39838	0.00021205	532.2982817705434	32.297	0.64636	32.105	31.771	32.417	-0.19261					24	14	2	0	0	0	0.027866	1	2254	2254		42.396	11.892	1	108530	+		66816	20097	47068	47135	72166	72166					0.05340547708851773
RLDVRLSRT	9	Unmodified	_RLDVRLSRT_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3357543945312	2	558.335821	1114.65709	0.22028	0.00012299	-0.8056	-0.00044979	-0.58531	-0.0003268	558.335436203206	19.419	0.74025	19.258	19.034	19.774	-0.16079					25	14	2	0	0	0	0.56934	1	425	425		54.776	4.7518	1	1619300			66817	1852	47069	47136	72167	72167					0.10434730240103818
RLDVRLSRT	9	Unmodified	_RLDVRLSRT_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.3359375	2	558.335821	1114.65709	0.80497	0.00044944	-1.0308	-0.00057555	-0.22586	-0.0001261	558.3352968791023	19.581	0.79082	19.381	19.106	19.897	-0.2001					39	15	5	0	0	0	0.31037	1	435	435		74.255	2.3776	1	1523300			66818	1852	47069	47136	72168	72168					0.10434730240103818
RLDVRLSRT	9	Unmodified	_RLDVRLSRT_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.3356323242188	2	558.335821	1114.65709	1.2019	0.00067105	-1.6303	-0.00091026	-0.42843	-0.00023921	558.334950413817	19.533	0.59347	19.3	19.077	19.67	-0.23345					37	11	5	0	0	0	0.67687	1	411	411		47.657	6.8792	1	1427500			66819	1852	47069	47136	72169	72169					0.10434730240103818
RLDVRLSRT	9	Unmodified	_RLDVRLSRT_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.335821	1114.65709	1.2766	0.00071278	-2.172	-0.0012127	-0.89536	-0.00049991	558.3348820743194	19.136	0.39487	19.136	18.873	19.268	0	-0.12963	-0.0012574	NaN	74.255	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59358			66820	1852	47069	47136							0.10434730240103818
RLDVRLSRT	9	Unmodified	_RLDVRLSRT_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.335821	1114.65709	-0.34166	-0.00019076	-0.062936	-3.5139E-05	-0.40459	-0.0002259	558.3358037243929	19.294	0.39449	19.175	19.003	19.397	-0.11872	-0.090661	0.0010977	NaN	74.255	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52574			66821	1852	47069	47136							0.10434730240103818
RLDVRLSRT	9	Unmodified	_RLDVRLSRT_					0	0	0		nc|ENSG00000087495|Q96KR7-3|PHACTR3;nc|ENSG00000087495|Q96KR7-2|PHACTR3;nc|ENSG00000087495|Q96KR7-4|PHACTR3;ENSG00000087495|ENST00000371015|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.335821	1114.65709	2.9191	0.0016298	-3.2543	-0.001817	-0.33517	-0.00018714	558.3338849559863	19.279	0.44436	19.346	19.143	19.587	0.066195	0.079675	-0.002466	NaN	74.255	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52168			66822	1852	47069	47136							0.10434730240103818
RLDVSLPFV	9	Unmodified	_RLDVSLPFV_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3013305664062	2	523.305667	1044.59678	-0.91368	-0.00047813	0.87941	0.0004602	-0.034273	-1.7935E-05	523.3061672145052	79.643	1.0895	79.643	79.283	80.373	0					58	25	3	0	0	0	0.32811	1	9882	9882		71.877	7.6702	1	957170			66823	5114	47070	47137	72170	72170					0.0762661985700106
RLEAQGLGAV	10	Unmodified	_RLEAQGLGAV_					0	0	0			REV__ENST00000533947.1_1_11:67810509-67810656:+|nuORF	REV__ENST00000533947.1_1_11:67810509-67810656:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2901611328125	2	507.290548	1012.56654	-1.0778	-0.00054674	1.8861	0.00095681	0.80836	0.00041007	507.2905469412003	43.576	0.72354	43.576	43.186	43.91	0					60	19	4	0	0	0	1.0236	1	4107	4107		42.864	0.46813	1	3376800	+		66824	34624	47071	47138	72171	72171					0.06076261191810772
RLEDRQSF	8	Unmodified	_RLEDRQSF_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7695922851562	2	525.76998	1049.52541	-0.95878	-0.0005041	1.2161	0.0006394	0.25735	0.00013531	525.7700844210527	34.093	1.1087	33.918	33.662	34.771	-0.17557					82	27	4	0	0	0	0.99042	1	2475	2475		38.806	5.9937	1	9799400			66825	8152	47072	47139	72172	72172					0.0026250015232562873
RLEEIVVQV	9	Unmodified	_RLEEIVVQV_					0	0	0			REV__nc|nan|Q9H972-2|C14orf93	REV__nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8242797851562	2	542.821681	1083.62881	0.10581	5.7437E-05	3.2796	0.0017802	3.3854	0.0018377	542.8234352971284	101.74	1.4688	101.61	101.31	102.78	-0.13156					94	34	4	0	0	0	0.5973	1	12678	12678		52.937	1.744	1	4002000	+		66826	21152	47073	47140	72173	72173					0.09033987540146882
RLEENVLGV	9	Unmodified	_RLEENVLGV_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7910766601562	2	514.790381	1027.56621	-0.87648	-0.0004512	0.91091	0.00046893	0.03443	1.7724E-05	514.7907596048357	53.222	0.95	53.318	53.054	54.004	0.095669					53	26	3	0	0	0	0.67687	1	5671	5671		47.657	0	1	3876400	+		66827	29110	47074	47141	72174	72174					0.053528414719721695
RLELDGKFWKV	11	Unmodified	_RLELDGKFWKV_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	3	464.266233	1389.77687	0.52473	0.00024362	3.1711	0.0014722	3.6958	0.0017158	464.2672052615311	42.233	0.64689	42.259	41.746	42.393	0.026012					27	18	2	0	0	0	0.024735	1	3738	3738		27.644	0	1	250030	+		66828	24228	47075	47142	72175	72175					0.09757298793988411
RLENHEENN	9	Unmodified	_RLENHEENN_					0	0	0			REV__nc|ENSG00000137275|Q13546-2|RIPK1	REV__nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.2861328125	2	577.762883	1153.51121	-0.40087	-0.00023161	-2.7978	-0.0016165	-3.1987	-0.0018481	577.7609356429653	67.223	0.70385	67.246	66.686	67.389	0.023911					28	16	2	0	0	0	0.024523	1	7946	7946		29.15	1.2673	1	135100	+		66829	23746	47076	47143	72176	72176					-0.059401970665931
RLEPVTAAA	9	Unmodified	_RLEPVTAAA_					0	0	0		nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1	nc|ENSG00000144749|Q96JA1-2|LRIG1	nc|ENSG00000144749|Q96JA1-2|LRIG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.26708984375	2	464.266542	926.51853	-0.088618	-4.1142E-05	0.12281	5.7018E-05	0.034196	1.5876E-05	464.26650566657827	42.695	1.0789	42.695	42.289	43.367	0					63	29	3	0	0	0	0.64897	1	3941	3941		49.536	5.1589	1	3649900			66830	5765	47077	47144	72177	72177					0.05233187271744555
RLEPVTAAA	9	Unmodified	_RLEPVTAAA_					0	0	0		nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1	nc|ENSG00000144749|Q96JA1-2|LRIG1	nc|ENSG00000144749|Q96JA1-2|LRIG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2670593261719	2	464.266542	926.51853	0.83634	0.00038828	-0.76388	-0.00035464	0.072455	3.3639E-05	464.2660847026912	42.784	0.90475	42.81	42.393	43.298	0.026012					57	24	3	0	0	0	0.64897	1	3906	3906		49.536	8.7579	1	3667800			66831	5765	47077	47144	72178	72178					0.05233187271744555
RLERPRQLL	9	Unmodified	_RLERPRQLL_					0	0	0			REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.8666381835938	2	590.867289	1179.72002	-1.6451	-0.00097203	0.037283	2.2029E-05	-1.6078	-0.00095	590.8675248480401	102.24	1.0921	102.24	101.95	103.04	0					85	25	6	0	0	0	0.89441	1	13129	13129		32.812	2.3088	1	5963900	+		66832	31057	47078	47145	72179	72179					0.13735296028130506
RLERPRQLL	9	Unmodified	_RLERPRQLL_					0	0	0			REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.8665771484375	2	590.867289	1179.72002	-0.98146	-0.00057991	-0.55879	-0.00033017	-1.5402	-0.00091008	590.8671327626686	102.25	1.0723	102.25	101.94	103.01	0.0073471					79	25	6	0	0	0	0.85329	1	13048	13048		35.618	1.4457	1	5209500	+		66833	31057	47078	47145	72180	72180					0.13735296028130506
RLERPRQLL	9	Unmodified	_RLERPRQLL_					0	0	0			REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.8662719726562	2	590.867289	1179.72002	0.62197	0.0003675	-1.8626	-0.0011005	-1.2406	-0.00073303	590.8660983357469	102.35	1.1233	102.34	102.02	103.14	-0.0054474					67	26	5	0	0	0	0.85329	1	13008	13008		35.618	1.4457	1	6109300	+		66834	31057	47078	47145	72181	72181					0.13735296028130506
RLERPRQLL	9	Unmodified	_RLERPRQLL_					0	0	0			REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.86669921875	2	590.867289	1179.72002	-0.15177	-8.9679E-05	-1.0045	-0.00059355	-1.1563	-0.00068323	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931					85	41	5	0	0	0	0.59099	1	12697	12697		53.351	7.3792	1	5173900	+		66835	31057	47078	47145	72182	72182					0.13735296028130506
RLERPRQLL	9	Unmodified	_RLERPRQLL_					0	0	0			REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	REV__ENST00000368605.2_1_6:116783229-116784525:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	590.867289	1179.72002	-0.15177	-8.9679E-05	-1.0045	-0.00059355	-1.1563	-0.00068323	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931	-0.026934	0.00046269	NaN	53.351	85	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5173900	+		66836	31057	47078	47145							0.13735296028130506
RLFDEPQLA	9	Unmodified	_RLFDEPQLA_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000133243|ENST00000255608|BTBD2;ENST00000587225.1_1_19:1989877-1990887:-|nuORF;ENST00000589685.2_1_19:1986489-1990887:-|nuORF	ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	ENSG00000133243|ENST00000255608|BTBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7900390625	2	544.790381	1087.56621	0.84588	0.00046083	-1.3051	-0.00071103	-0.45926	-0.0002502	544.789612384074	59.308	1.4213	59.111	58.675	60.096	-0.19651					97	38	4	0	0	0	0.28753	1	6742	6742		77.318	10.888	1	8781100			66837	4694;1282	47079	47146	72183	72183					0.025928414719373905
RLFDGRSTI	9	Unmodified	_RLFDGRSTI_					0	0	0			REV__ENST00000437623.1_3_2:162089384-162092026:+|nuORF	REV__ENST00000437623.1_3_2:162089384-162092026:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.796142578125	2	532.795998	1063.57744	-1.4075	-0.00074992	0.95375	0.00050816	-0.45376	-0.00024176	532.7964432291853	35.708	1.0261	35.708	35.38	36.406	0					68	27	4	0	0	0	0.77768	1	2784	2784		40.778	5.6261	1	3283300	+		66838	23666	47080	47147	72184	72184					0.048196635660815446
RLFDGRSTI	9	Unmodified	_RLFDGRSTI_					0	0	0			REV__ENST00000437623.1_3_2:162089384-162092026:+|nuORF	REV__ENST00000437623.1_3_2:162089384-162092026:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7960205078125	2	532.795998	1063.57744	-0.78611	-0.00041883	0.16508	8.7956E-05	-0.62102	-0.00033088	532.7960022946929	35.61	1.0392	35.654	35.305	36.344	0.04406					71	27	4	0	0	0	0.82115	1	2720	2720		37.812	0	1	2638400	+		66839	23666	47080	47147	72185	72185					0.048196635660815446
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7880249023438	2	533.787641	1065.56073	0.84936	0.00045338	-0.67377	-0.00035965	0.17559	9.3728E-05	533.7871234989452	74.003	0.89381	74.003	73.741	74.635	0					55	20	4	0	0	0	0.2101	2	9037	9037;9059		87.696	15.819	1	3076300			66840	2767	47081	47148	72186;72187	72186					0.030571626801247476
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7875366210938	2	533.787641	1065.56073	-0.15608	-8.3313E-05	0.25603	0.00013667	0.099956	5.3355E-05	533.7876263925991	74.268	1.283	74.009	73.78	75.063	-0.25887					63	30	4	0	0	0	0.247	2	9047	9047;9066		82.75	24.521	1	3215400			66841	2767	47081	47148	72188;72189	72188					0.030571626801247476
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7881469726562	2	533.787641	1065.56073	-0.92514	-0.00049383	1.0235	0.00054631	0.098322	5.2483E-05	533.7880110933829	74.047	0.97945	74.057	73.793	74.773	0.0096512					56	22	3	0	0	0	0.2101	4	8977	8965;8977;8989;9003		87.696	8.8244	1	2862100			66842	2767	47081	47148	72190;72191;72192;72193	72191					0.030571626801247476
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7881469726562	2	533.787641	1065.56073	-0.17378	-9.2763E-05	0.458	0.00024447	0.28421	0.00015171	533.787744147402	74.259	0.71981	73.983	73.799	74.519	-0.27573					43	19	3	0	0	0	0.247	2	8743	8734;8743		82.75	24.521	1	2162000			66843	2767	47081	47148	72194;72195	72195					0.030571626801247476
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7905883789062	2	533.787641	1065.56073	-0.24618	-0.00013141	0.5803	0.00030976	0.33411	0.00017835	533.7878257628765	74.245	1.0664	73.982	73.791	74.858	-0.26348					49	26	3	0	0	0	0.16638	2	8751	8751;8761		95.815	23.938	1	1426600			66844	2767	47081	47148	72196;72197	72196					0.030571626801247476
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.787109375	2	533.787641	1065.56073	-0.047562	-2.5388E-05	0.0083166	4.4393E-06	-0.039246	-2.0949E-05	533.7875169360245	74.004	1.157	73.814	73.602	74.759	-0.19026					43	29	2	0	0	0	0.30449	2	8716	8716;8729		75.043	12.936	1	1555100			66845	2767	47081	47148	72198;72199	72198					0.030571626801247476
RLFEDVRSW	9	Unmodified	_RLFEDVRSW_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.213623046875	3	403.212128	1206.61456	0.43263	0.00017444	0.20309	8.1887E-05	0.63571	0.00025633	403.2121100058466	56.688	0.69178	56.521	56.204	56.896	-0.1672					45	17	3	0	0	0	0.25614	2	6146	6146;6158		81.525	34.297	1	1876200			66846	5709	47082	47149	72200;72201	72200					0.01951335111834851
RLFEDVRSW	9	Unmodified	_RLFEDVRSW_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.3154907226562	2	604.314554	1206.61456	-0.72619	-0.00043885	0.68076	0.00041139	-0.045427	-2.7452E-05	604.3149432596316	56.655	0.9755	56.488	56.204	57.18	-0.1672					63	25	4	0	0	0	0.20016	1	6152	6152		82.75	21.779	1	1855400			66847	5709	47082	47149	72202	72202					0.01951335111834851
RLFEDVRSW	9	Unmodified	_RLFEDVRSW_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.21282958984375	3	403.212128	1206.61456	1.1863	0.00047834	-0.64395	-0.00025965	0.54237	0.00021869	403.2117729856896	56.711	0.71539	56.509	56.211	56.926	-0.20209					50	18	4	0	0	0	0.14087	2	6162	6150;6162		101.46	49.733	1	2157600			66848	5709	47082	47149	72203;72204	72204					0.01951335111834851
RLFEDVRSW	9	Unmodified	_RLFEDVRSW_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.3157958984375	2	604.314554	1206.61456	-0.12833	-7.7553E-05	0.20891	0.00012625	0.080581	4.8696E-05	604.3146083157504	56.704	0.92525	56.502	56.211	57.136	-0.20209					62	24	4	0	0	0	0.27133	1	6163	6163		82.75	13.964	1	2147600			66849	5709	47082	47149	72205	72205					0.01951335111834851
RLFEDVRSW	9	Unmodified	_RLFEDVRSW_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3161010742188	2	604.314554	1206.61456	0.15202	9.1868E-05	-0.27151	-0.00016408	-0.11949	-7.2209E-05	604.3142881991495	56.708	0.87453	56.483	56.229	57.104	-0.2248					49	22	3	0	0	0	0.15193	1	6145	6145		104.06	41.949	1	1716700			66850	5709	47082	47149	72206	72206					0.01951335111834851
RLFEDVRSW	9	Unmodified	_RLFEDVRSW_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.2127380371094	3	403.212128	1206.61456	0.11181	4.5085E-05	0.40403	0.00016291	0.51585	0.000208	403.21221900401054	56.761	0.73188	56.536	56.229	56.961	-0.2248					49	18	4	0	0	0	0.29609	1	6156	6156		76.17	26.136	1	1516300			66851	5709	47082	47149	72207	72207					0.01951335111834851
RLFENYIEL	9	Unmodified	_RLFENYIEL_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	598.8181762695312	2	598.819138	1195.62372	-0.30324	-0.00018158	0.062362	3.7344E-05	-0.24087	-0.00014424	598.8190485917355	74.395	1.1993	74.136	73.902	75.101	-0.25887					72	28	3	0	0	0	0.6238	1	9085	9085		51.193	0	1	1635900			66852	3231	47083	47150	72208	72208					0.03373683677500594
RLFHPHAPHL	10	Unmodified	_RLFHPHAPHL_					0	0	0			REV__ENST00000534553.5_1_11:61722629-61730618:+|nuORF	REV__ENST00000534553.5_1_11:61722629-61730618:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.5098876953125	3	408.896475	1223.66759	0.726	0.00029686	4.3988	0.0017987	5.1248	0.0020955	408.8975796222652	28.061	0.53819	28.142	27.832	28.37	0.080811					16	12	2	0	0	0	0.03519	1	1562	1562		23.523	0	1	42179	+		66853	34644	47084	47151	72209	72209					0.06470757685156059
RLFIELAM	8	Unmodified	_RLFIELAM_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2624206542969	2	496.783513	991.552473	-0.87525	-0.00043481	-3.269	-0.001624	-4.1442	-0.0020588	496.78154722346324	55.545	0.74135	55.329	55.003	55.745	-0.21551					24	20	2	0	0	0	0.027866	1	6011	6011		26.796	0	1	210790	+		66854	36716	47085	47152	72210	72210					0.05635892439147483
RLFLSLPV	8	Unmodified	_RLFLSLPV_					0	0	0		ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.8001403808594	2	472.80002	943.585488	1.0765	0.00050898	-0.80272	-0.00037953	0.27379	0.00012945	472.799509326366	77.911	1.5715	77.7	77.418	78.99	-0.21087					100	37	4	0	0	0	0.6248	2	9617	9594;9617		73.975	12.98	1	2904600			66855	4397	47086	47153	72211;72212	72212					0.1114384255351979
RLFLSLPV	8	Unmodified	_RLFLSLPV_					0	0	0		ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.79986572265625	2	472.80002	943.585488	0.052135	2.465E-05	0.29533	0.00013963	0.34746	0.00016428	472.80000825846173	77.825	1.6119	77.841	77.536	79.148	0.015907					100	38	4	0	0	0	0.42327	2	9540	9540;9551		94.006	8.6469	1	2907400			66856	4397	47086	47153	72213;72214	72213					0.1114384255351979
RLFPGLAI	8	Unmodified	_RLFPGLAI_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.779541015625	2	443.779088	885.543623	1.469	0.00065191	-1.174	-0.00052099	0.29501	0.00013092	443.77844524287576	74.021	1.3754	74.021	73.741	75.116	0					52	32	2	0	0	0	0.88442	1	9067	9067		52.299	11.521	1	2196900			66857	5597	47087	47154	72215	72215					0.09627286864974849
RLFPGLAI	8	Unmodified	_RLFPGLAI_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.7792053222656	2	443.779088	885.543623	0.47658	0.0002115	-0.22288	-9.8909E-05	0.2537	0.00011259	443.7788415570408	74.308	1.283	74.049	73.78	75.063	-0.25887					56	30	2	0	0	0	0.78609	1	9054	9054		60.294	15.763	1	2302500			66858	5597	47087	47154	72216	72216					0.09627286864974849
RLFPGLAI	8	Unmodified	_RLFPGLAI_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.77947998046875	2	443.779088	885.543623	-0.41261	-0.00018311	0.59273	0.00026304	0.18012	7.9933E-05	443.7792388490553	74.008	1.0612	74.017	73.793	74.854	0.0096588					46	24	2	0	0	0	0.65272	1	8990	8990		71.378	16.613	1	2153000			66859	5597	47087	47154	72217	72217					0.09627286864974849
RLFPVPGSGLV	11	Unmodified	_RLFPVPGSGLV_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.3399658203125	2	571.340041	1140.66553	-0.3344	-0.00019106	-0.12183	-6.9608E-05	-0.45624	-0.00026067	571.3399268705373	71.917	1.796	71.917	71.566	73.362	0					128	45	5	0	0	0	0.15312	6	8722	8709;8722;8734;8747;8763;8776		104.01	40.48	1	10929000			66860	18030	47088	47155	72218;72219;72220;72221;72222;72223	72219					0.10082284156692367
RLFPVPGSGLV	11	Unmodified	_RLFPVPGSGLV_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.3400268554688	2	571.340041	1140.66553	0.56151	0.00032081	-1.0985	-0.00062761	-0.53697	-0.00030679	571.3394033066835	72.278	1.5726	71.997	71.658	73.231	-0.28124					141	39	5	0	0	0	0.073523	6	8757	8735;8745;8757;8768;8781;8793		114.89	46.108	1	10386000			66861	18030	47088	47155	72224;72225;72226;72227;72228;72229	72226					0.10082284156692367
RLFPVPGSGLV	11	Unmodified	_RLFPVPGSGLV_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2;ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.3402709960938	2	571.340041	1140.66553	-0.097454	-5.5679E-05	-0.45869	-0.00026207	-0.55614	-0.00031775	571.3397379528916	72.02	1.5651	72.029	71.69	73.255	0.0097733					133	39	5	0	0	0	0.15312	6	8654	8654;8668;8681;8693;8703;8716		104.01	54.478	1	11474000			66862	18030	47088	47155	72230;72231;72232;72233;72234;72235	72230					0.10082284156692367
RLFQAHQV	8	Unmodified	_RLFQAHQV_					0	0	0		nc|ENSG00000161010|Q6NTE8-3|MRNIP;ENSG00000161010|ENST00000292586|MRNIP;ENST00000519318.5_1_5:179274922-179285796:-|nuORF;ENST00000520150.5_1_5:179267832-179285817:-|nuORF	nc|ENSG00000161010|Q6NTE8-3|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7793884277344	2	499.780151	997.545748	-0.50356	-0.00025167	0.63557	0.00031765	0.13201	6.5978E-05	499.7800797569383	32.852	0.86176	32.852	32.494	33.356	0					88	22	6	0	0	0	0.52467	1	2311	2311		83.287	23.169	1	4029000			66863	6857	47089	47156	72236	72236					0.046877156027903766
RLFQAHQV	8	Unmodified	_RLFQAHQV_					0	0	0		nc|ENSG00000161010|Q6NTE8-3|MRNIP;ENSG00000161010|ENST00000292586|MRNIP;ENST00000519318.5_1_5:179274922-179285796:-|nuORF;ENST00000520150.5_1_5:179267832-179285817:-|nuORF	nc|ENSG00000161010|Q6NTE8-3|MRNIP	nc|ENSG00000161010|Q6NTE8-3|MRNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7792053222656	2	499.780151	997.545748	0.096677	4.8317E-05	-0.0077473	-3.8719E-06	0.08893	4.4445E-05	499.7798017173027	32.623	0.90079	32.686	32.315	33.216	0.062885					99	23	6	0	0	0	0.78609	1	2215	2215		60.294	4.7898	1	3514200			66864	6857	47089	47156	72237	72237					0.046877156027903766
RLFQTEEKI	9	Unmodified	_RLFQTEEKI_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;nc|ENSG00000197114|Q8N5A5-4|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3243408203125	2	582.324588	1162.63462	0.23691	0.00013796	-0.44475	-0.00025899	-0.20784	-0.00012103	582.3242311471226	42.519	0.679	42.545	42.255	42.934	0.026012					52	18	4	0	0	0	0.01571	1	3866	3866		195.05	18.601	1	2244700			66865	9955	47090	47157	72238	72238					0.05981086051792772
RLFQTEEKI	9	Unmodified	_RLFQTEEKI_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;nc|ENSG00000197114|Q8N5A5-4|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	582.324588	1162.63462	-0.88943	-0.00051793	0.62715	0.00036521	-0.26227	-0.00015273	582.3247947242539	42.344	0.66129	42.344	42.053	42.715	0	-0.091507	0.00033496	NaN	195.05	58	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2388100			66866	9955	47090	47157							0.05981086051792772
RLFQTEEKI	9	Unmodified	_RLFQTEEKI_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;nc|ENSG00000197114|Q8N5A5-4|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	582.324588	1162.63462	-0.84393	-0.00049144	0.71493	0.00041632	-0.129	-7.5119E-05	582.3248520567896	42.554	0.98806	42.418	42.078	43.066	-0.13612	-0.017931	0.00043719	NaN	195.05	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2261900			66867	9955	47090	47157							0.05981086051792772
RLFRPYIG	8	Unmodified	_RLFRPYIG_					0	0	0		ENST00000231498.7_1_5:37299070-37299611:-|nuORF	ENST00000231498.7_1_5:37299070-37299611:-|nuORF	ENST00000231498.7_1_5:37299070-37299611:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2874755859375	2	511.300719	1020.58688	0.31812	0.00016266	2.9341	0.0015002	3.2522	0.0016628	511.80382951601024	71.625	0.19177	71.419	71.344	71.536	-0.20614					7	4	2	0	0	0	0.027866	1	8357	8357		20.482	2.1574	1	62395			66868	11240	47091	47158	72239	72239					0.07741476642274847
RLFRTDRGG	9	Unmodified	_RLFRTDRGG_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.2957763671875	2	539.299239	1076.58392	-0.063516	-3.4254E-05	-3.9546	-0.0021327	-4.0181	-0.002167	539.2970550015616	17.351	0.27737	17.208	17.048	17.325	-0.14278					8	5	2	0	0	0	1.0233	1	151	151		15.642	1.8665	1	31583	+		66869	28452	47092	47159	72240	72240					0.0486960151747553
RLFRTDRGG	9	Unmodified	_RLFRTDRGG_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	539.299239	1076.58392	-0.063516	-3.4254E-05	-3.9546	-0.0021327	-4.0181	-0.002167	539.2970550015616	17.351	0.27737	17.208	17.048	17.325	-0.14278	0.050342	-0.00056283	NaN	15.642	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31583	+		66870	28452	47092	47159							0.0486960151747553
RLFRTDRGG	9	Unmodified	_RLFRTDRGG_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	539.299239	1076.58392	1.0242	0.00055236	-3.9698	-0.0021409	-2.9455	-0.0015885	539.7990135217475	17.307	0.35091	17.153	17.007	17.358	-0.15403	-0.0049337	-0.00057915	NaN	15.642	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74645	+		66871	28452	47092	47159							0.0486960151747553
RLFSKGASK	9	Unmodified	_RLFSKGASK_					0	0	0		ATP2B3|p.E603K|1|0.36|ENSG00000067842|chrX:153550270-153550270|G/A|missense_variant	ATP2B3|p.E603K|1|0.36|ENSG00000067842|chrX:153550270-153550270|G/A|missense_variant	ATP2B3|p.E603K|1|0.36|ENSG00000067842|chrX:153550270-153550270|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2986755371094	2	497.295633	992.576714	0.97144	0.00048309	3.5699	0.0017753	4.5413	0.0022584	497.2971402708592	70.396	0.86014	70.396	70.166	71.026	0					48	21	3	0	0	0	0.82115	1	8526	8526		37.812	0.65241	1	655490			66872	156	47093	47160	72241	72241					0.0801286891704649
RLFSLLVE	8	Unmodified	_RLFSLLVE_					0	0	0		ENST00000492247.3_1_14:74522272-74524078:+|nuORF	ENST00000492247.3_1_14:74522272-74524078:+|nuORF	ENST00000492247.3_1_14:74522272-74524078:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2304382324219	2	488.794935	975.575317	-0.083337	-4.0735E-05	3.066	0.0014987	2.9827	0.0014579	488.79621447904543	31.555	0.56409	31.37	31.172	31.736	-0.18503					17	13	2	0	0	0	0.027866	1	2082	2082		47.916	5.4411	1	88245			66873	15479	47094	47161	72242	72242					0.08655234828290759
RLFSSIVTV	9	Unmodified	_RLFSSIVTV_					0	0	0		ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.3056335449219	2	511.305667	1020.59678	0.39735	0.00020317	-0.95181	-0.00048666	-0.55446	-0.0002835	511.3051399281556	65.894	0.90424	65.894	65.358	66.262	0					70	23	4	0	0	0	0.12914	1	7835	7835		104.06	24.344	1	14132000			66874	7667	47095	47162	72243	72243					0.08730619857010424
RLFSSIVTV	9	Unmodified	_RLFSSIVTV_					0	0	0		ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	ENSG00000167264|ENST00000565263|DUS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3059387207031	2	511.305667	1020.59678	-0.37038	-0.00018938	-0.30313	-0.00015499	-0.67352	-0.00034437	511.305459622028	66.032	1.0057	66.062	65.382	66.388	0.030106					74	28	4	0	0	0	0.14024	2	7757	7757;7770		101.6	13.846	1	15087000			66875	7667	47095	47162	72244;72245	72244					0.08730619857010424
RLFTFALGAAG	11	Unmodified	_RLFTFALGAAG_					0	0	0			REV__ENST00000307355.11_1_7:64254774-64254888:+|nuORF	REV__ENST00000307355.11_1_7:64254774-64254888:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3145141601562	2	562.316566	1122.61858	-0.91933	-0.00051696	-2.9166	-0.00164	-3.8359	-0.002157	562.3148644502255	21.626	1.1012	21.626	21.097	22.198	0					64	22	5	0	0	0	0.70358	1	697	697		63.534	1.8426	1	1352800	+		66876	30134	47096	47163	72246	72246					0.06217424605551969
RLFTGQTP	8	Unmodified	_RLFTGQTP_					0	0	0			REV__ENSG00000225526|ENST00000564146|MKRN2OS	REV__ENSG00000225526|ENST00000564146|MKRN2OS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2742919921875	2	460.253434	918.492316	-0.3194	-0.000147	-0.20542	-9.4547E-05	-0.52482	-0.00024155	460.25319846420985	34.499	0.68967	34.292	34.082	34.771	-0.20696					33	16	3	0	0	0	0.027866	1	2520	2520		42.396	27.531	1	690120	+		66877	28864	47097	47164	72247	72247					0.029809181002860896
RLFVGEPVW	9	Unmodified	_RLFVGEPVW_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.8055419921875	2	551.805834	1101.59712	0.11559	6.3786E-05	-0.48885	-0.00026975	-0.37326	-0.00020597	551.8053917699496	71.608	1.1427	71.333	71.056	72.198	-0.27509					73	27	4	0	0	0	0.17822	3	8368	8346;8356;8368		93.195	28.889	1	3563200			66878	9143	47098	47165	72248;72249;72250	72250					0.05038039576857045
RLFVGEPVW	9	Unmodified	_RLFVGEPVW_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.805419921875	2	551.805834	1101.59712	0.1139	6.2851E-05	-0.5389	-0.00029737	-0.425	-0.00023452	551.8053366480084	71.558	1.1391	71.296	71.033	72.173	-0.26199					84	27	6	0	0	0	0.14024	4	8364	8353;8364;8376;8389		101.6	35.171	1	3275300			66879	9143	47098	47165	72251;72252;72253;72254	72252					0.05038039576857045
RLFVGEPVW	9	Unmodified	_RLFVGEPVW_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.8046875	2	551.805834	1101.59712	0.47988	0.0002648	-1.3025	-0.00071873	-0.82262	-0.00045393	551.8047609504451	71.45	1.4086	71.244	70.492	71.901	-0.20614					83	33	5	0	0	0	0.2508	4	8323	8323;8333;8344;8358		82.241	26.736	1	3232100			66880	9143	47098	47165	72255;72256;72257;72258	72255					0.05038039576857045
RLFVYDVFWLR	11	Unmodified	_RLFVYDVFWLR_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3111267089844	3	505.281995	1512.82415	-1.0496	-0.00053032	2.7207	0.0013747	1.6711	0.00084438	505.28346784168053	35.053	0.36865	35.031	34.828	35.196	-0.021763					18	9	2	0	0	0	0.024869	1	2656	2656		11.932	3.5251	1	197100			66881	2175	47099	47166	72259	72259					0.08825578064966066
RLGASLGTIGT	11	Unmodified	_RLGASLGTIGT_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3041381835938	2	523.303655	1044.59276	-0.50892	-0.00026632	0.8433	0.0004413	0.33437	0.00017498	523.3039441520884	90.238	1.1068	90.113	89.805	90.912	-0.12513					64	26	4	0	0	0	0.99553	1	11045	11045		37.812	3.639	1	1517700	+		66882	28681	47100	47167	72260	72260					0.07224530363305348
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.3246459960938	2	521.324391	1040.63423	-0.17093	-8.9111E-05	-0.83739	-0.00043655	-1.0083	-0.00052566	521.3241757669083	49.527	1.3085	49.527	48.934	50.242	0					118	36	6	0	0	0	0.14181	3	5126	5108;5114;5126		101.25	22.225	1	9390200			66883	1329	47101	47168	72261;72262;72263	72263					0.11553711122587629
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MSMS	OPSCC_39_ClassI_Rep-2	2	521.3248291015625	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.665	1	49.514	49.014	50.014	-0.1512								0	0	0	0.10825	1	5120	5120		90.601	23.107	1				66884	1329	47101	47168	72264	72264					0.11553711122587629
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MSMS	OPSCC_39_ClassI_Rep-2	2	521.324462890625	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.817	1	49.665	49.165	50.165	-0.1512								0	0	0	0.15405	1	5144	5144		80.455	0.74203	1				66885	1329	47101	47168	72265	72265					0.11553711122587629
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MSMS	OPSCC_39_ClassI_Rep-3	3	521.325439453125	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.361	1	49.435	48.935	49.935	0.074196								0	0	0	0.20126	1	5029	5029		75.043	17.232	1				66886	1329	47101	47168	72266	72266					0.11553711122587629
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MSMS	OPSCC_39_ClassI_Rep-3	3	521.3250122070312	2	521.324391	1040.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.385	1	49.459	48.959	49.959	0.074196								0	0	0	0.084717	1	5033	5033		95.815	20.772	1				66887	1329	47101	47168	72267	72267					0.11553711122587629
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.324391	1040.63423	0.24918	0.0001299	3.6507	0.0019032	3.8999	0.0020331	521.8282081915958	49.795	0.33415	49.516	49.359	49.693	-0.27977	0.0068282	0.0041172	NaN	101.25	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196320			66888	1329	47101	47168							0.11553711122587629
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.324391	1040.63423	0.4118	0.00021468	3.05	0.00159	3.4618	0.0018047	521.8284437232433	49.665	0.37437	49.484	49.307	49.681	-0.18071	-0.024695	0.0034908	NaN	101.25	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200160			66889	1329	47101	47168							0.11553711122587629
RLGEVANEV	9	Unmodified	_RLGEVANEV_					0	0	0		ENST00000600330.1_1_19:50978580-50979281:-|nuORF;nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENSG00000142530|ENST00000600100|GARIN5A	ENST00000600330.1_1_19:50978580-50979281:-|nuORF	ENST00000600330.1_1_19:50978580-50979281:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7670593261719	2	493.766906	985.519259	0.38096	0.0001881	-0.44114	-0.00021782	-0.06018	-2.9715E-05	493.7666354051661	40.674	1.0456	40.674	40.281	41.326	0					55	29	2	0	0	0	0.17845	1	3610	3610		93.143	21.848	1	4374600			66890	5567	47102	47169	72268	72268					0.025919819208070294
RLGEVANEV	9	Unmodified	_RLGEVANEV_					0	0	0		ENST00000600330.1_1_19:50978580-50979281:-|nuORF;nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENSG00000142530|ENST00000600100|GARIN5A	ENST00000600330.1_1_19:50978580-50979281:-|nuORF	ENST00000600330.1_1_19:50978580-50979281:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7672119140625	2	493.766906	985.519259	0.73324	0.00036205	-0.93151	-0.00045995	-0.19828	-9.7903E-05	493.76639768998035	40.83	1.061	40.707	40.267	41.328	-0.12317					55	29	2	0	0	0	0.053401	2	3605	3605;3616		127.46	12.003	1	3765800			66891	5567	47102	47169	72269;72270	72269					0.025919819208070294
RLGEVANEV	9	Unmodified	_RLGEVANEV_					0	0	0		ENST00000600330.1_1_19:50978580-50979281:-|nuORF;nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENSG00000142530|ENST00000600100|GARIN5A	ENST00000600330.1_1_19:50978580-50979281:-|nuORF	ENST00000600330.1_1_19:50978580-50979281:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7672119140625	2	493.766906	985.519259	-0.34504	-0.00017037	0.16639	8.2156E-05	-0.17865	-8.8212E-05	493.7669732306498	40.836	1.1401	40.859	40.424	41.564	0.023006					52	32	2	0	0	0	0.17845	2	3565	3565;3576		93.143	7.9824	1	4059300			66892	5567	47102	47169	72271;72272	72271					0.025919819208070294
RLGFSGGVIL	10	Unmodified	_RLGFSGGVIL_					0	0	0			REV__ENSG00000133983|ENST00000389912|COX16	REV__ENSG00000133983|ENST00000389912|COX16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8035583496094	2	509.805834	1017.59712	-0.39701	-0.0002024	-3.7604	-0.0019171	-4.1574	-0.0021195	509.803882454417	85.261	2.8936	85.203	84.32	87.214	-0.05761					177	68	4	0	0	0	1.0508	1	10830	10830		39.253	3.6345	1	3182000	+		66893	23407	47103	47170	72273	72273					0.08902039576867082
RLGGLTAPL	9	Unmodified	_RLGGLTAPL_					0	0	0		nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.2791442871094	2	449.279452	896.544351	0.072224	3.2449E-05	-0.074081	-3.3283E-05	-0.0018566	-8.3415E-07	449.27930437967393	57.839	0.90779	57.664	57.345	58.252	-0.1749					36	24	2	0	0	0	0.20967	1	6490	6490		87.754	8.3033	1	3673500			66894	18643	47104	47171	72274	72274					0.09194081514021946
RLGGPRSL	8	Unmodified	_RLGGPRSL_					0	0	0		ENST00000608232.5_1_3:183851865-183852039:-|nuORF	ENST00000608232.5_1_3:183851865-183852039:-|nuORF	ENST00000608232.5_1_3:183851865-183852039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.26153564453125	2	428.261594	854.508634	0.10911	4.6729E-05	0.34496	0.00014773	0.45407	0.00019446	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0009	1	11310	11310		37.159	6.6555	1	88816000			66895	17587	47105	47172	72275	72275					0.07556044057025701
RLGGPRSL	8	Unmodified	_RLGGPRSL_					0	0	0		ENST00000608232.5_1_3:183851865-183852039:-|nuORF	ENST00000608232.5_1_3:183851865-183852039:-|nuORF	ENST00000608232.5_1_3:183851865-183852039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.26171875	2	428.261594	854.508634	0.4968	0.00021276	-0.17636	-7.5526E-05	0.32044	0.00013723	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0574	2	11272	11272;11296		27.882	2.4321	1	86424000			66896	17587	47105	47172	72276;72277	72276					0.07556044057025701
RLGGSRPV	8	Unmodified	_RLGGSRPV_					0	0	0		ENST00000338779.10_1_16:70696382-70696562:-|nuORF	ENST00000338779.10_1_16:70696382-70696562:-|nuORF	ENST00000338779.10_1_16:70696382-70696562:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.2540588378906	2	421.253769	840.492984	0.52374	0.00022063	-0.20362	-8.5774E-05	0.32012	0.00013485	421.25353990257713	83.615	1.1131	83.477	83.081	84.194	-0.1386					55	25	3	0	0	0	1.043	1	10095	10095		30.504	0	1	568200			66897	12447	47106	47173	72278	72278					0.06635757539982023
RLGIKPESV	9	Unmodified	_RLGIKPESV_					0	0	0		ENSG00000175183|ENST00000311083|CSRP2	ENSG00000175183|ENST00000311083|CSRP2	ENSG00000175183|ENST00000311083|CSRP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.8027648925781	2	499.803291	997.59203	-0.72607	-0.00036289	0.014578	7.2861E-06	-0.7115	-0.00035561	499.80316476248163	36.31	1.5502	36.31	35.608	37.158	0					118	41	5	0	0	0	0.51687	1	2817	2817		58.23	5.2932	1	4941900			66898	8536	47107	47174	72279	72279					0.09313735714226823
RLGITKVVQ	9	Unmodified	_RLGITKVVQ_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.8066101074219	2	507.326934	1012.63931	-0.57512	-0.00029177	0.46118	0.00023397	-0.11394	-5.7804E-05	507.3271684109645	34.417	0.4183	34.417	34.25	34.668	0					18	10	2	0	0	0	0.024405	1	2582	2582		44.117	17.424	1	255970	+		66899	20937	47108	47175	72280	72280					0.13350014985235248
RLGITKVVQ	9	Unmodified	_RLGITKVVQ_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.806396484375	2	507.326934	1012.63931	-0.09246	-4.6908E-05	-0.069926	-3.5475E-05	-0.16239	-8.2383E-05	507.3268674208677	34.218	0.50553	34.213	33.908	34.414	-0.0045624					24	12	3	0	0	0	0.023007	1	2552	2552		99.375	42.654	1	265930	+		66900	20937	47108	47175	72281	72281					0.13350014985235248
RLGITKVVQ	9	Unmodified	_RLGITKVVQ_					0	0	0			REV__ENSG00000147065|ENST00000360270|MSN	REV__ENSG00000147065|ENST00000360270|MSN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.80584716796875	2	507.326934	1012.63931	-0.89388	-0.00045349	0.89538	0.00045425	0.0015005	7.6127E-07	507.32732215148826	34.31	0.50909	34.361	34.131	34.64	0.050255					27	12	3	0	0	0	0.024323	1	2521	2521		63.306	24.5	1	217970	+		66901	20937	47108	47175	72282	72282					0.13350014985235248
RLGKLLQV	8	Unmodified	_RLGKLLQV_					0	0	0		TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.79827880859375	2	463.810919	925.607286	0.12445	5.772E-05	-0.014421	-6.6887E-06	0.11003	5.1031E-05	463.81069595079487	41.883	0.6826	41.883	41.505	42.187	0					28	19	3	0	0	0	0.027866	1	3766	3766		25.45	8.977	1	232760			66902	38110	47109	47176	72283	72283					0.14150647302085417
RLGKLLQVGYT	11	Unmodified	_RLGKLLQVGYT_					0	0	0		TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.3753662109375	2	624.377155	1246.73976	-0.033284	-2.0782E-05	4.2066	0.0026265	4.1733	0.0026057	624.3795088411415	100.6	0.55309	100.6	100.31	100.86	0					31	12	3	0	0	0	1.0777	1	12891	12891		17.468	0	1	835050			66903	38110	47110	47177	72284	72284					0.12625627248235105
RLGKLLQVGYT	11	Unmodified	_RLGKLLQVGYT_					0	0	0		TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	TRPV1|p.S723L|1|0.24|ENSG00000196689|chr17:3572185-3572185|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	624.3719482421875	2	624.377155	1246.73976	0.0948	5.9191E-05	4.2422	0.0026487	4.337	0.0027079	624.3797573076713	100.78	0.46889	100.61	100.37	100.84	-0.17178					22	13	2	0	0	0	0.99553	1	12518	12518		37.812	10.764	1	329940			66904	38110	47110	47177	72285	72285					0.12625627248235105
RLGKTFSI	8	Unmodified	_RLGKTFSI_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;ADGRG4|p.P1831Kfs*16|1|0.04|ENSG00000156920|chrX:136349195-136349196|-/TAAAGCTAGTCAG|frameshift_variant	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.27960205078125	2	461.279452	920.544351	0.22538	0.00010396	-0.37639	-0.00017362	-0.15101	-6.9659E-05	461.27917608156173	42.587	0.5341	42.587	42.289	42.823	0					38	14	3	0	0	0	0.97794	1	3932	3932		40.778	1.5253	1	6756400			66905	37	47111	47178	72286	72286					0.08090081514046688
RLGKTFSI	8	Unmodified	_RLGKTFSI_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;ADGRG4|p.P1831Kfs*16|1|0.04|ENSG00000156920|chrX:136349195-136349196|-/TAAAGCTAGTCAG|frameshift_variant	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2796630859375	2	461.279452	920.544351	0.11547	5.3265E-05	-0.27145	-0.00012521	-0.15598	-7.1949E-05	461.2792388352515	42.777	0.50159	42.638	42.345	42.846	-0.13929					36	13	3	0	0	0	0.91956	1	3929	3929		49.442	0	1	7065800			66906	37	47111	47178	72287	72287					0.08090081514046688
RLGLDGLREL	10	Unmodified	_RLGLDGLREL_					0	0	0			REV__ENST00000563328.4_1_16:72699075-72699198:+|nuORF	REV__ENST00000563328.4_1_16:72699075-72699198:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.3405151367188	2	571.33803	1140.66151	-0.33441	-0.00019106	3.3986	0.0019418	3.0642	0.0017507	571.3399268705373	71.917	1.796	71.917	71.566	73.362	0					128	45	5	0	0	0	0.78438	1	8796	8796		61.691	8.6023	1	10929000	+		66907	35221	47112	47179	72288	72288					0.09680194662996655
RLGLDGLREL	10	Unmodified	_RLGLDGLREL_					0	0	0			REV__ENST00000563328.4_1_16:72699075-72699198:+|nuORF	REV__ENST00000563328.4_1_16:72699075-72699198:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.3402099609375	2	571.33803	1140.66151	0.56151	0.00032081	2.422	0.0013838	2.9835	0.0017046	571.3394033066835	72.278	1.5726	71.997	71.658	73.231	-0.28124					141	39	5	0	0	0	0.78438	1	8806	8806		61.691	1.7605	1	10386000	+		66908	35221	47112	47179	72289	72289					0.09680194662996655
RLGLEEAAR	9	Unmodified	_RLGLEEAAR_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.8066101074219	2	507.788173	1013.56179	-0.60692	-0.00030819	1.7862	0.00090703	1.1793	0.00059885	507.7890267783122	34.54	0.53419	34.54	34.292	34.826	0					24	13	3	0	0	0	0.023837	1	2582	2582		64.207	16.55	1	182380			66909	18203	47113	47180	72290	72290					0.055553770490291754
RLGLEEAAR	9	Unmodified	_RLGLEEAAR_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.80584716796875	2	507.788173	1013.56179	-0.91732	-0.0004658	2.4058	0.0012216	1.4885	0.00075583	507.7887958229747	34.361	0.55205	34.412	34.005	34.557	0.050255					17	13	3	0	0	0	0.023061	1	2521	2521		79.713	24.208	1	130740			66910	18203	47113	47180	72291	72291					0.055553770490291754
RLGLEEAAR	9	Unmodified	_RLGLEEAAR_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.788173	1013.56179	-0.96638	-0.00049071	-1.4324	-0.00072737	-2.3988	-0.0012181	507.78835530471275	34.297	0.55616	34.121	33.896	34.452	-0.17557	-0.2135	-0.0028135	NaN	79.713	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104740			66911	18203	47113	47180							0.055553770490291754
RLGLGNVNRVP	11	Unmodified	_RLGLGNVNRVP_					0	0	0		ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.856689453125	2	597.856921	1193.69929	0.015122	9.0409E-06	-0.91443	-0.0005467	-0.89931	-0.00053766	597.856308443694	95.479	1.5939	95.356	94.554	96.148	-0.12251					86	36	3	0	0	0	1.0238	1	11785	11785		31.53	0	1	382040			66912	13310	47114	47181	72292	72292					0.11018705648439209
RLGLGNVNRVP	11	Unmodified	_RLGLGNVNRVP_					0	0	0		ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	597.856921	1193.69929	-1.5419	-0.00092185	0.59893	0.00035807	-0.943	-0.00056378	597.8572496203914	95.422	1.4587	95.422	94.616	96.075	0	0.037444	0.0012044	NaN	31.53	67	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315070			66913	13310	47114	47181							0.11018705648439209
RLGLGNVNRVP	11	Unmodified	_RLGLGNVNRVP_					0	0	0		ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	597.856921	1193.69929	-0.43442	-0.00025972	-0.4264	-0.00025493	-0.86082	-0.00051465	597.8566078433067	95.29	1.4572	95.293	94.607	96.065	0.0033722	-0.091354	-2.1593E-05	NaN	31.53	63	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296950			66914	13310	47114	47181							0.11018705648439209
RLGLGNVNRVP	11	Unmodified	_RLGLGNVNRVP_					0	0	0		ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	ENST00000380384.5_1_9:19379871-19380177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	597.856921	1193.69929	-0.27901	-0.00016681	-0.28082	-0.00016789	-0.55983	-0.0003347	597.8565337562221	95.468	0.98173	95.473	95.096	96.078	0.0041122	0.087884	0.00015248	NaN	31.53	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287500			66915	13310	47114	47181							0.11018705648439209
RLGLQPSL	8	Unmodified	_RLGLQPSL_					0	0	0		ENST00000264079.10_1_19:7595197-7598755:+|nuORF	ENST00000264079.10_1_19:7595197-7598755:+|nuORF	ENST00000264079.10_1_19:7595197-7598755:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2713928222656	2	442.271627	882.528701	0.20446	9.0428E-05	-0.10084	-4.46E-05	0.10362	4.5828E-05	442.27144999075483	46.534	1.0207	46.534	46.056	47.076	0					68	27	4	0	0	0	0.44658	1	4617	4617		90.777	0	1	4307000			66916	11553	47115	47182	72293	72293					0.08273794996978268
RLGLQPSL	8	Unmodified	_RLGLQPSL_					0	0	0		ENST00000264079.10_1_19:7595197-7598755:+|nuORF	ENST00000264079.10_1_19:7595197-7598755:+|nuORF	ENST00000264079.10_1_19:7595197-7598755:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2718505859375	2	442.271627	882.528701	-0.54482	-0.00024096	0.63226	0.00027963	0.087436	3.867E-05	442.27175649291655	46.578	1.1729	46.425	45.988	47.161	-0.15301					81	31	4	0	0	0	0.33369	1	4607	4607		106.42	0	1	4275300			66917	11553	47115	47182	72294	72294					0.08273794996978268
RLGLVNGI	8	Unmodified	_RLGLVNGI_					0	0	0		ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	ENST00000368850.4_3_6:111498427-111514516:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.8463439941406	2	421.266345	840.518136	-0.34081	-0.00014357	0.68088	0.00028683	0.34006	0.00014326	421.266340050855	33.089	0.84511	32.923	32.476	33.321	-0.16565					31	20	2	0	0	0	0.027866	1	2364	2364		25.45	0	1	83139			66918	3210	47116	47183	72295	72295					0.09149812342559471
RLGNIGQHE	9	Unmodified	_RLGNIGQHE_					0	0	0		ENST00000505192.5_1_3:128598473-128627108:+|nuORF;ENST00000308982.11_1_3:128598473-128603521:+|nuORF;ENST00000505602.1_1_3:128598473-128598902:+|nuORF;ENST00000515429.1_1_3:128598503-128612413:+|nuORF	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	ENST00000505192.5_1_3:128598473-128627108:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2703247070312	2	512.270147	1022.52574	-0.064022	-3.2797E-05	1.8639	0.00095485	1.7999	0.00092205	512.2708564123549	104.09	1.5978	104.09	103.57	105.16	0.0031357					89	45	3	0	0	0	0.87448	1	13329	13329		34.173	2.6427	1	332150			66919	15729	47117	47184	72296	72296					0.015379198721802823
RLGNPPLPRN	10	Unmodified	_RLGNPPLPRN_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.089	2	11439	11439;11571		34.173	6.2903	1	13648000			66920	9305	47118	47185	72297;72298	72297					0.08550747585650242
RLGNPPLPRN	10	Unmodified	_RLGNPPLPRN_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3296508789062	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.1307	2	11381	11381;11452		26.693	3.6504	1	14972000			66921	9305	47118	47185	72299;72300	72299					0.08550747585650242
RLGNPPLPRN	10	Unmodified	_RLGNPPLPRN_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3297119140625	2	567.330539	1132.64652	-0.39327	-0.00022312	-1.1254	-0.00063845	-1.5186	-0.00086157	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.1307	1	11091	11091		26.693	3.1702	1	19210000			66922	9305	47118	47185	72301	72301					0.08550747585650242
RLGNRPSLRRE	11	Unmodified	_RLGNRPSLRRE_					0	0	0		ENST00000587413.5_1_19:37288433-37288667:+|nuORF	ENST00000587413.5_1_19:37288433-37288667:+|nuORF	ENST00000587413.5_1_19:37288433-37288667:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9329833984375	3	451.932248	1352.77491	0.91985	0.00041571	-0.031027	-1.4022E-05	0.88882	0.00040169	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0408	1	12241	12241		27.644	0.89421	1	1435400			66923	17271	47119	47186	72302	72302					0.11263682828735
RLGNSSRDSL	10	Unmodified	_RLGNSSRDSL_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.3321533203125	2	552.791444	1103.56833	0.60764	0.0003359	-3.5752	-0.0019763	-2.9675	-0.0016404	552.7894164151297	95.632	0.56893	95.509	95.16	95.728	-0.12251					26	12	3	0	0	0	0.03519	1	11800	11800		49.536	7.1399	1	187950			66924	2455	47120	47187	72303	72303					0.020692702097676374
RLGPHIGAP	9	Unmodified	_RLGPHIGAP_					0	0	0			REV__nc|ENSG00000186810|P49682-3|CXCR3	REV__nc|ENSG00000186810|P49682-3|CXCR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.734130859375	2	459.269419	916.524284	0.67707	0.00031096	-1.4936	-0.00068597	-0.81654	-0.00037501	459.2687208384251	69.7	0.58295	69.407	69.05	69.633	-0.29291					22	14	2	0	0	0	0.024412	1	8330	8330		24.203	0	1	145950	+		66925	37029	47121	47188	72304	72304					0.06268330574084757
RLGPSVVGL	9	Unmodified	_RLGPSVVGL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.2779846191406	2	449.279452	896.544351	0.14861	6.6767E-05	-0.47566	-0.0002137	-0.32705	-0.00014694	449.27904975027144	57.586	0.99926	57.586	57.266	58.266	0					45	26	3	0	0	0	0.26966	1	6491	6491		79.713	0.26157	1	4179000			66926	6055	47122	47189	72305	72305					0.09194081514044683
RLGPSVVGL	9	Unmodified	_RLGPSVVGL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.2779235839844	2	449.279452	896.544351	-0.47153	-0.00021185	0.67983	0.00030543	0.2083	9.3587E-05	449.2796187371609	57.551	1.0558	57.646	57.281	58.337	0.095306					46	28	2	0	0	0	0.2508	1	6396	6396		82.241	2.7895	1	2806900			66927	6055	47122	47189	72306	72306					0.09194081514044683
RLGPVPPGL	9	Unmodified	_RLGPVPPGL_					0	0	0		nc|ENSG00000146833|Q9C037-3|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	nc|ENSG00000146833|Q9C037-3|TRIM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.2818908691406	2	453.281995	904.549437	-0.63768	-0.00028905	0.7983	0.00036185	0.16062	7.2805E-05	453.2821962532158	55.68	1.7591	55.778	55.294	57.053	0.098015					104	48	4	0	0	0	0.64155	1	6085	6085		50.025	2.1089	1	1643700			66928	5912	47123	47190	72307	72307					0.09334385376666887
RLGQVSALPL	10	Unmodified	_RLGQVSALPL_					0	0	0		ENSG00000111671|ENST00000524270|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	MSMS	OPSCC_40_ClassI_Rep-2	5	527.3244018554688	2	527.324391	1052.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.216	1	32.023	31.523	32.523	-0.19261								0	0	0	0.77371	1	2200	2200		56.721	1.2168	1				66929	3134	47124	47191	72308	72308					0.11001711122617053
RLGRLALL	8	Unmodified	_RLGRLALL_					0	0	0			REV__ENSG00000163428|ENST00000295628|LRRC58	REV__ENSG00000163428|ENST00000295628|LRRC58	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2739562988281	2	456.311087	910.60762	-0.28216	-0.00012875	1.3407	0.00061177	1.0585	0.00048302	456.3115883480652	27.755	0.30765	27.742	27.572	27.88	-0.012983					9	7	2	0	0	0	0.027866	1	1521	1521		19.36	0	1	43709	+		66930	25565	47125	47192	72309	72309					0.1487406702192402
RLGSARLDLAV	11	Unmodified	_RLGSARLDLAV_					0	0	0		ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.7205810546875	2	585.851304	1169.68806	-1.2753	-0.00074716	1.7445	0.001022	0.46912	0.00027483	585.8519431908923	29.367	0.30589	29.121	28.967	29.273	-0.24524					9	6	2	0	0	0	0.024762	1	1802	1802		24.519	6.2571	1	49944			66931	7680	47126	47193	72310	72310					0.1099988355433652
RLGSARLDLAV	11	Unmodified	_RLGSARLDLAV_					0	0	0		ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.851304	1169.68806	-0.85063	-0.00049834	0.54121	0.00031707	-0.30942	-0.00018127	585.8514532124515	29.196	0.34157	29.046	28.912	29.254	-0.14952	-0.032254	-0.00081518	NaN	24.519	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55893			66932	7680	47126	47193							0.1099988355433652
RLGSKEKGQ	9	Unmodified	_RLGSKEKGQ_					0	0	0		ENST00000573456.5_1_15:74490196-74494813:-|nuORF	ENST00000573456.5_1_15:74490196-74494813:-|nuORF	ENST00000573456.5_1_15:74490196-74494813:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7880554199219	2	501.788173	1001.56179	-0.33296	-0.00016707	-0.26786	-0.00013441	-0.60081	-0.00030148	501.78802430151103	32.058	0.66306	32.12	31.839	32.502	0.062885					48	16	4	0	0	0	0.74711	1	2148	2148		42.864	0.46813	1	3243200			66933	17072	47127	47194	72311	72311					0.06107377049045226
RLGSLRLSLHS	11	Unmodified	_RLGSLRLSLHS_					0	0	0		ENSG00000214688|ENST00000441508|C10orf105	ENSG00000214688|ENST00000441508|C10orf105	ENSG00000214688|ENST00000441508|C10orf105	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8694458007812	2	619.870028	1237.7255	-0.39229	-0.00024317	-0.62947	-0.00039019	-1.0218	-0.00063336	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.0238	1	12138	12138		31.53	4.7337	1	4658300			66934	10564	47128	47195	72312	72312					0.11614974819940471
RLGSLRLSLHS	11	Unmodified	_RLGSLRLSLHS_					0	0	0		ENSG00000214688|ENST00000441508|C10orf105	ENSG00000214688|ENST00000441508|C10orf105	ENSG00000214688|ENST00000441508|C10orf105	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8692626953125	2	619.870028	1237.7255	-1.0156	-0.00062956	0.033515	2.0775E-05	-0.98212	-0.00060879	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.0017	1	11840	11840		36.447	4.9169	1	4459000			66935	10564	47128	47195	72313	72313					0.11614974819940471
RLGSLRLSLHS	11	Unmodified	_RLGSLRLSLHS_					0	0	0		ENSG00000214688|ENST00000441508|C10orf105	ENSG00000214688|ENST00000441508|C10orf105	ENSG00000214688|ENST00000441508|C10orf105	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8699951171875	2	619.870028	1237.7255	-0.47108	-0.00029201	-0.44611	-0.00027653	-0.91719	-0.00056854	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	0.97926	1	11790	11790		41.427	6.2746	1	4765600			66936	10564	47128	47195	72314	72314					0.11614974819940471
RLGTPQQIA	9	Unmodified	_RLGTPQQIA_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENST00000524058.1_1_5:156810283-156816436:+|nuORF	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.28521728515625	2	492.285266	982.555979	-1.7175	-0.00084552	1.7477	0.00086038	0.030202	1.4868E-05	492.2860373425705	93.341	1.344	93.201	92.786	94.13	-0.13995					82	30	4	0	0	0	0.87448	1	11479	11479		34.173	2.2177	1	3197500			66937	11022	47129	47196	72315	72315					0.06400278537364557
RLGTWRLEVGG	11	Unmodified	_RLGTWRLEVGG_					0	0	0		ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3491821289062	2	622.348929	1242.6833	-0.11463	-7.1341E-05	-2.538	-0.0015795	-2.6526	-0.0016508	622.3474282644756	94.376	2.5846	94.228	93.304	95.889	-0.14771					133	59	3	0	0	0	1.0075	1	11703	11703		35.152	3.5178	1	353230			66938	15458	47130	47197	72316	72316					0.07166999411515462
RLGTWRLEVGG	11	Unmodified	_RLGTWRLEVGG_					0	0	0		ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	622.348929	1242.6833	-0.26236	-0.00016328	-2.4505	-0.0015251	-2.7128	-0.0016883	622.3475940709519	94.292	1.835	94.292	93.515	95.35	0	0.042715	-0.00030988	NaN	35.152	99	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255880			66939	15458	47130	47197							0.07166999411515462
RLGTWRLEVGG	11	Unmodified	_RLGTWRLEVGG_					0	0	0		ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	622.348929	1242.6833	0.094756	5.8971E-05	-2.4139	-0.0015023	-2.3192	-0.0014433	622.347405678442	94.209	2.3559	94.209	93.499	95.855	-0.00022888	-0.040395	-0.00026438	NaN	35.152	94	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265170			66940	15458	47130	47197							0.07166999411515462
RLGTWRLEVGG	11	Unmodified	_RLGTWRLEVGG_					0	0	0		ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	622.348929	1242.6833	-0.99357	-0.00061834	-1.8025	-0.0011218	-2.7961	-0.0017401	622.3479813796365	94.317	1.8806	94.323	93.519	95.399	0.0059891	0.073702	0.00049665	NaN	35.152	95	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229280			66941	15458	47130	47197							0.07166999411515462
RLGTWRLEVGG	11	Unmodified	_RLGTWRLEVGG_					0	0	0		ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	622.348929	1242.6833	-0.32494	-0.00020223	-2.3158	-0.0014412	-2.6407	-0.0016434	622.3476962473245	94.349	2.2394	94.211	93.311	95.551	-0.13779	-0.038478	-0.0001422	NaN	35.152	116	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296550			66942	15458	47130	47197							0.07166999411515462
RLGTWRLEVGG	11	Unmodified	_RLGTWRLEVGG_					0	0	0		ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	622.348929	1242.6833	-0.64151	-0.00039924	-1.8609	-0.0011581	-2.5024	-0.0015574	622.347883637171	94.355	2.4043	94.233	93.41	95.814	-0.12215	-0.016501	0.00042398	NaN	35.152	127	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273780			66943	15458	47130	47197							0.07166999411515462
RLGVHGSGLL	10	Unmodified	_RLGVHGSGLL_					0	0	0			REV__ENST00000487163.5_1_1:161131815-161133927:+|nuORF;REV__ENSG00000143258|ENST00000368002|USP21	REV__ENSG00000143258|ENST00000368002|USP21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7672424316406	2	504.801083	1007.58761	-0.20988	-0.00010595	-2.5918	-0.0013084	-2.8017	-0.0014143	504.7997166444575	63.579	0.5364	63.386	63.029	63.565	-0.19243					14	13	2	0	0	0	0.03519	1	7222	7222		34.173	11.13	1	122010	+		66944	33602;24218	47131	47198	72317	72317					0.08412271291331308
RLGVKLAKTPM	11	Unmodified	_RLGVKLAKTPM_					0	0	0		ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15;nc|ENSG00000141497|Q9H091-2|ZMYND15;ENST00000574829.5_1_17:4643771-4647168:+|nuORF	ENSG00000141497|ENST00000433935|ZMYND15	ENSG00000141497|ENST00000433935|ZMYND15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.3770751953125	2	607.376101	1212.73765	-0.023589	-1.4328E-05	2.1607	0.0013124	2.1372	0.0012981	607.3773004159782	97.764	0.65714	97.627	97.331	97.988	-0.1367					27	15	2	0	0	0	1.013	1	12088	12088		33.922	7.8582	1	250600			66945	5497	47132	47199	72318	72318					0.13978875238763067
RLGVPKGR	8	Unmodified	_RLGVPKGR_					0	0	0			REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.78515625	2	441.785236	881.555919	3.6137	0.0015965	-3.2636	-0.0014418	0.35008	0.00015466	441.7836410489759	18.901	0.63931	18.965	18.599	19.239	0.063307					29	12	3	0	0	0	1.0574	1	289	289		25.45	4.9683	1	141870	+		66946	35207	47133	47200	72319	72319					0.11040323328040813
RLGVPPGRLW	10	Unmodified	_RLGVPPGRLW_					0	0	0		ENSG00000213231|ENST00000340722|TCL1B	ENSG00000213231|ENST00000340722|TCL1B	ENSG00000213231|ENST00000340722|TCL1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8436279296875	2	575.845825	1149.6771	-0.5107	-0.00029409	-4.4919	-0.0025866	-5.0026	-0.0028807	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.941	1	10931	10931		51.335	14.176	1	2085600			66947	10497	47134	47201	72320	72320					0.1082452597070187
RLHAPIKLR	9	Unmodified	_RLHAPIKLR_					0	0	0			REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF	REV__ENST00000503468.5_1_15:56126312-56207567:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3261108398438	2	552.361642	1102.70873	-0.1047	-5.7832E-05	3.9879	0.0022028	3.8832	0.0021449	552.3629656422395	54.181	0.23939	53.936	53.833	54.073	-0.2453					10	7	2	0	0	0	0.024541	1	5727	5727		23.042	2.5607	1	235690	+		66948	33955	47135	47202	72321	72321					0.16148518724617134
RLHASRSDN	9	Unmodified	_RLHASRSDN_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7598266601562	2	528.270678	1054.5268	-1.147	-0.00060591	1.4601	0.00077134	0.31314	0.00016543	528.2739211479249	80.963	1.0072	80.963	80.457	81.464	0					46	24	3	0	0	0	0.024319	1	10026	10026		39.253	0	1	190040	+		66949	20398	47136	47203	72322	72322					0.0017213424109741027
RLHEKIQEA	9	Unmodified	_RLHEKIQEA_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.3143920898438	2	562.314554	1122.61456	-0.91934	-0.00051696	0.66038	0.00037134	-0.25896	-0.00014562	562.3148644502255	21.626	1.1012	21.626	21.097	22.198	0					64	22	5	0	0	0	0.16539	2	674	674;686		96.034	5.4327	1	1352800			66950	6015	47137	47204	72323;72324	72323					0.058153351118335195
RLHEKIQEA	9	Unmodified	_RLHEKIQEA_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MSMS	OPSCC_39_ClassI_Rep-2	2	562.3145141601562	2	562.314554	1122.61456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.598	1	21.508	21.008	22.008	-0.090092								0	0	0	0.014459	1	670	670		141.52	5.2523	1				66951	6015	47137	47204	72325	72325					0.058153351118335195
RLHEKIQEA	9	Unmodified	_RLHEKIQEA_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3146362304688	2	562.314554	1122.61456	-0.83835	-0.00047142	0.61824	0.00034764	-0.22012	-0.00012378	562.3148376586181	21.546	1.3514	21.618	21.205	22.556	0.071487					76	27	4	0	0	0	0.086035	1	630	630		115.49	5.3742	1	1182900			66952	6015	47137	47204	72326	72326					0.058153351118335195
RLHGALREAAR	11	Unmodified	_RLHGALREAAR_					0	0	0		ENST00000215904.6_1_22:38054740-38054869:+|nuORF	ENST00000215904.6_1_22:38054740-38054869:+|nuORF	ENST00000215904.6_1_22:38054740-38054869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	625.3701171875	2	625.365444	1248.71634	0.35861	0.00022426	1.3726	0.00085836	1.7312	0.0010826	625.3659585176757	99.882	0.63972	99.892	99.66	100.3	0.010117					45	16	3	0	0	0	0.72712	1	12755	12755		62.107	5.6736	1	3763400			66953	11147	47138	47205	72327	72327					0.10192626254251991
RLHGALREAAR	11	Unmodified	_RLHGALREAAR_					0	0	0		ENST00000215904.6_1_22:38054740-38054869:+|nuORF	ENST00000215904.6_1_22:38054740-38054869:+|nuORF	ENST00000215904.6_1_22:38054740-38054869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	625.3677368164062	2	625.365444	1248.71634	-0.14399	-9.0049E-05	1.9128	0.0011962	1.7688	0.0011061	625.366423957791	100	0.64489	99.997	99.693	100.34	-0.0050888					46	17	3	0	0	0	0.87847	1	12701	12701		52.937	11.51	1	3233000			66954	11147	47138	47205	72328	72328					0.10192626254251991
RLHGPASI	8	Unmodified	_RLHGPASI_					0	0	0		ENST00000552138.5_1_14:105821400-105836438:+|nuORF	ENST00000552138.5_1_14:105821400-105836438:+|nuORF	ENST00000552138.5_1_14:105821400-105836438:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.86212158203125	2	425.748319	849.482085	-0.54954	-0.00023396	0.63593	0.00027074	0.086388	3.678E-05	425.7487011290513	29.839	0.51137	29.667	29.447	29.959	-0.17258					16	11	2	0	0	0	0.027866	1	1866	1866		25.45	0	1	49569			66955	16616	47139	47206	72329	72329					0.051323551656992095
RLHIQGTRTI	10	Unmodified	_RLHIQGTRTI_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8562622070312	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0992	1	11515	11515		32.812	0	1	5598500			66956	7240	47140	47207	72330	72330					0.11018705648461946
RLHLAGHLL	9	Unmodified	_RLHLAGHLL_					0	0	0		ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3235473632812	2	515.319443	1028.62433	0.90167	0.00046465	-0.44678	-0.00023023	0.45489	0.00023442	515.3193010384139	73.884	0.93674	73.884	73.698	74.635	0					50	21	3	0	0	0	0.024443	1	9061	9061		35.201	6.9464	1	1420300			66957	12827	47141	47208	72331	72331					0.11116567907879471
RLHNTIVEI	9	Unmodified	_RLHNTIVEI_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.8190307617188	2	547.819473	1093.62439	-1.4737	-0.00080733	0.89954	0.00049279	-0.57418	-0.00031455	547.8200493388165	44.076	1.3447	44.076	43.836	45.181	0					90	38	4	0	0	0	0.071379	2	4172	4172;4185		120.87	56.661	1	4846900			66958	3327	47142	47209	72332;72333	72332					0.08132523117251367
RLHNTIVEI	9	Unmodified	_RLHNTIVEI_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.8197021484375	2	547.819473	1093.62439	-1.6638	-0.00091146	1.2382	0.00067832	-0.42558	-0.00023314	547.8202112827664	44.27	1.469	44.126	43.814	45.283	-0.14471					98	42	4	0	0	0	0.062622	3	4198	4174;4184;4198		124.08	57.651	1	4253600			66959	3327	47142	47209	72334;72335;72336	72336					0.08132523117251367
RLHNTIVEI	9	Unmodified	_RLHNTIVEI_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8194580078125	2	547.819473	1093.62439	-0.98893	-0.00054176	0.55782	0.00030559	-0.43111	-0.00023617	547.8198484011187	44.142	1.4486	44.179	43.888	45.337	0.0369					93	41	4	0	0	0	0.071379	2	4136	4122;4136		120.87	54.439	1	4003100			66960	3327	47142	47209	72337;72338	72338					0.08132523117251367
RLHPAGLLPL	10	Unmodified	_RLHPAGLLPL_					0	0	0			REV__ENST00000596924.1_1_19:58858250-58858792:-|nuORF	REV__ENST00000596924.1_1_19:58858250-58858792:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2575073242188	2	543.842751	1085.67095	-0.15675	-8.5249E-05	-3.0948	-0.0016831	-3.2515	-0.0017683	543.8404816217529	47.579	0.33843	47.309	47.125	47.463	-0.26939					11	8	2	0	0	0	0.03519	1	4667	4667		30.504	22.813	1	126630	+		66961	35796	47143	47210	72339	72339					0.1315400773919464
RLHSGRGEL	9	Unmodified	_RLHSGRGEL_					0	0	0			REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7880249023438	2	512.785964	1023.55738	0.65295	0.00033482	1.6236	0.00083258	2.2766	0.0011674	512.7866985631875	71.191	0.7561	70.985	70.703	71.459	-0.20613					45	17	3	0	0	0	0.50848	1	8320	8320		58.782	3.2778	1	5124400	+		66962	30265	47144	47211	72340	72340					0.046539126261336605
RLIDLGVGL	9	Unmodified	_RLIDLGVGL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.30023193359375	2	478.300384	954.586216	0.73219	0.00035021	-0.93531	-0.00044736	-0.20312	-9.715E-05	478.2999040287328	72.559	1.6131	72.559	71.94	73.553	0					110	40	4	0	0	0	0.043667	3	8846	8822;8846;8873		131.03	19.383	1	9765200			66963	3610	47145	47212	72341;72342;72343	72342					0.10710637202555517
RLIDLGVGL	9	Unmodified	_RLIDLGVGL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.3001708984375	2	478.300384	954.586216	0.7452	0.00035643	-0.97601	-0.00046683	-0.23082	-0.0001104	478.29989438525683	72.93	1.5024	72.649	72.025	73.528	-0.28124					110	37	5	0	0	0	0.077175	4	8876	8829;8839;8863;8876		118.74	16.401	1	11365000			66964	3610	47145	47212	72344;72345;72346;72347	72347					0.10710637202555517
RLIDLGVGL	9	Unmodified	_RLIDLGVGL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3002624511719	2	478.300384	954.586216	0.49351	0.00023605	-0.67061	-0.00032075	-0.1771	-8.4708E-05	478.3000503983945	72.646	1.5347	72.656	72.023	73.558	0.0097733					108	38	4	0	0	0	0.043667	2	8780	8768;8780		131.03	19.383	1	10719000			66965	3610	47145	47212	72348;72349	72349					0.10710637202555517
RLIDPQTQV	9	Unmodified	_RLIDPQTQV_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.3024291992188	2	535.303655	1068.59276	-0.48531	-0.00025979	-0.39288	-0.00021031	-0.8782	-0.0004701	535.3032237888527	46.075	0.83886	46.075	45.748	46.587	0					60	23	4	0	0	0	0.57016	1	4540	4540		54.722	6.7628	1	3164800			66966	4974	47146	47213	72350	72350					0.061205303632732466
RLIEESVTV	9	Unmodified	_RLIEESVTV_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2979125976562	2	523.298039	1044.58152	-1.7492	-0.00091535	-3.4602	-0.0018107	-5.2094	-0.0027261	523.2950570466779	51.874	1.3508	51.605	51.203	52.553	-0.26904					80	35	4	0	0	0	0.32811	1	5370	5370		71.877	5.4482	1	7671500			66967	1009	47147	47214	72351	72351					0.061017082691250835
RLIEETISI	9	Unmodified	_RLIEETISI_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1;ENST00000427274.6_1_17:28822526-28847071:+|nuORF	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.3125610351562	2	537.313689	1072.61282	-1.316	-0.0007071	0.38316	0.00020588	-0.93284	-0.00050123	537.3137675091193	62.556	0.98818	62.556	62.313	63.301	0					46	26	2	0	0	0	0.19099	1	7273	7273		90.37	7.6193	1	1694100			66968	2913	47148	47215	72352	72352					0.07942281303257914
RLIEETISI	9	Unmodified	_RLIEETISI_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1;ENST00000427274.6_1_17:28822526-28847071:+|nuORF	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3123168945312	2	537.313689	1072.61282	-0.82651	-0.0004441	-0.089987	-4.8351E-05	-0.9165	-0.00049245	537.3135834181413	62.427	1.1544	62.489	62.301	63.456	0.062767					54	29	2	0	0	0	0.094442	1	7183	7183		112.41	16.596	1	2256300			66969	2913	47148	47215	72353	72353					0.07942281303257914
RLIEETISI	9	Unmodified	_RLIEETISI_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1;ENST00000427274.6_1_17:28822526-28847071:+|nuORF	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	537.313689	1072.61282	-1.5063	-0.00080937	0.5718	0.00030723	-0.93452	-0.00050213	537.3136880434678	62.74	0.98287	62.501	62.293	63.276	-0.23926	-0.014617	0.00044382	NaN	112.41	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1613300			66970	2913	47148	47215							0.07942281303257914
RLIEQEEYL	9	Unmodified	_RLIEQEEYL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	596.8140258789062	2	596.814053	1191.61355	-0.80289	-0.00047917	0.69609	0.00041543	-0.1068	-6.3739E-05	596.8143445381774	55.215	0.84159	55.215	54.944	55.786	0					72	23	5	0	0	0	0.18994	2	6089	6089;6098		90.601	28.493	1	3807400			66971	3327	47149	47216	72354;72355	72354					0.02541075952308347
RLIEQEEYL	9	Unmodified	_RLIEQEEYL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.8145141601562	2	596.814053	1191.61355	-1.1113	-0.00066325	1.1159	0.00066596	0.0045342	2.7061E-06	596.8145957654401	54.969	0.86486	55.067	54.733	55.598	0.098015					70	23	4	0	0	0	0.18994	1	5983	5983		90.601	7.8504	1	4429200			66972	3327	47149	47216	72356	72356					0.02541075952308347
RLIEQEEYL	9	Unmodified	_RLIEQEEYL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	596.814053	1191.61355	-1.184	-0.00070661	0.65549	0.00039121	-0.52847	-0.0003154	596.8144327969505	55.25	0.3396	55.104	54.948	55.288	-0.14609	-0.029833	-0.00025974	NaN	90.601	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168300			66973	3327	47149	47216							0.02541075952308347
RLIEQEEYL	9	Unmodified	_RLIEQEEYL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	596.814053	1191.61355	-0.76542	-0.00045681	0.95993	0.0005729	0.19451	0.00011609	596.8145540824886	55.318	0.39693	55.087	54.891	55.288	-0.23087	-0.046961	0.00010364	NaN	90.601	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275820			66974	3327	47149	47216							0.02541075952308347
RLIEQEEYL	9	Unmodified	_RLIEQEEYL_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	596.814053	1191.61355	-0.52199	-0.00031153	0.21041	0.00012558	-0.31158	-0.00018596	596.8141402013451	55.37	0.37018	55.154	54.931	55.301	-0.21551	0.020035	-0.000791	NaN	90.601	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173520			66975	3327	47149	47216							0.02541075952308347
RLIESDGPDP	10	Unmodified	_RLIESDGPDP_					0	0	0			REV__ENST00000329841.9_1_15:101455032-101455290:+|nuORF	REV__ENST00000329841.9_1_15:101455032-101455290:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7742309570312	2	549.774928	1097.5353	-1.4608	-0.00080311	0.79083	0.00043478	-0.66997	-0.00036833	549.7751763749944	43.974	0.92448	43.829	43.534	44.459	-0.14471					81	26	6	0	0	0	0.62431	1	4151	4151		74.255	1.3758	1	3019000	+		66976	30447	47150	47217	72357	72357					-0.00956356632968891
RLIESLFTI	9	Unmodified	_RLIESLFTI_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.32666015625	2	546.326599	1090.63865	0.24638	0.0001346	-0.035935	-1.9632E-05	0.21045	0.00011497	546.3265172259262	79.879	1.1618	79.632	79.32	80.482	-0.2465					42	27	2	0	0	0	0.1158	1	9544	9544		107.01	32.752	1	1954700			66977	1604	47151	47218	72358	72358					0.09695175545539314
RLIESLFTI	9	Unmodified	_RLIESLFTI_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.3270263671875	2	546.326599	1090.63865	0.090309	4.9338E-05	-0.032263	-1.7626E-05	0.058047	3.1712E-05	546.3265179502704	79.816	1.1267	79.597	79.327	80.454	-0.21923					49	26	2	0	0	0	0.12914	2	9553	9553;9562		104.06	32.761	1	1890300			66978	1604	47151	47218	72359;72360	72359					0.09695175545539314
RLIESLFTI	9	Unmodified	_RLIESLFTI_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.3267822265625	2	546.326599	1090.63865	-0.31734	-0.00017337	0.36066	0.00019704	0.043323	2.3668E-05	546.3267295007176	79.741	1.74	79.59	79.236	80.976	-0.15051					56	41	2	0	0	0	0.30449	1	9542	9542		75.043	10.836	1	1817600			66979	1604	47151	47218	72361	72361					0.09695175545539314
RLIIRRYS	8	Unmodified	_RLIIRRYS_					0	0	0		ENSG00000101751|ENST00000579534|POLI;ENST00000583576.1_1_18:51813681-51813789:+|nuORF	ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8375854492188	2	538.838	1075.66145	-0.37631	-0.00020277	0.25848	0.00013928	-0.11784	-6.3495E-05	538.8380825203327	18.606	0.53889	18.475	18.253	18.792	-0.13147					17	10	2	0	0	0	0.96769	1	305	305		42.396	5.237	1	125440			66980	2346	47152	47219	72362	72362					0.1266423945362476
RLIKEHTKIGG	11	Unmodified	_RLIKEHTKIGG_					0	0	0		ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	ENST00000505150.5_1_4:169411574-169413987:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.92236328125	3	417.922578	1250.7459	0.13055	5.4558E-05	-0.96193	-0.00040201	-0.83138	-0.00034745	417.9221244956388	104.43	1.2023	104.31	103.74	104.94	-0.12561					97	33	4	0	0	0	1.0532	1	13002	13002		24.232	5.7008	1	2252700			66981	15727	47153	47220	72363	72363					0.1305614547973164
RLIKGKEHELS	11	Unmodified	_RLIKGKEHELS_					0	0	0			REV__MYH2|p.E1561K|1|0.07|ENSG00000125414|chr17:10525047-10525047|C/T|missense_variant	REV__MYH2|p.E1561K|1|0.07|ENSG00000125414|chr17:10525047-10525047|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2571105957031	3	437.257738	1308.75138	1.0571	0.00046224	-1.8864	-0.00082483	-0.82923	-0.00036259	437.25688759784646	97.353	2.9903	97.23	96.187	99.177	-0.12368					226	70	5	0	0	0	1.0621	1	12087	12087		21.78	0.094677	1	1091400	+		66982	36406	47154	47221	72364	72364					0.10935824271564343
RLIKPNVNYR	10	Unmodified	_RLIKPNVNYR_					0	0	0			REV__ENSG00000177947|ENST00000325113|ODF3	REV__ENSG00000177947|ENST00000325113|ODF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	424.912353515625	3	424.922689	1271.74624	-0.73952	-0.00031424	3.413	0.0014503	2.6735	0.001136	424.923203099023	39.022	0.17452	39.022	38.902	39.076	0					5	4	2	0	0	0	0.03519	1	3313	3313		51.528	17.027	1	112670	+		66983	27153	47155	47222	72365	72365					0.12123565199590303
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3370971679688	2	549.337498	1096.66044	-0.35616	-0.00019565	-0.50968	-0.00027999	-0.86584	-0.00047564	549.337213434693	68.237	0.9527	68.237	67.908	68.861	0					85	24	4	0	0	0	0.15366	3	8182	8170;8182;8195		98.629	25.589	1	8851400			66984	6321	47156	47223	72366;72367;72368	72367					0.1159798029407284
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3377075195312	2	549.337498	1096.66044	-0.31171	-0.00017123	-0.31701	-0.00017415	-0.62873	-0.00034538	549.3372811239649	68.616	0.92297	68.324	67.974	68.897	-0.29267					82	23	5	0	0	0	0.17822	3	8209	8195;8209;8222		93.195	22.876	1	7325400			66985	6321	47156	47223	72369;72370;72371	72370					0.1159798029407284
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3369750976562	2	549.337498	1096.66044	-0.18492	-0.00010158	-0.40479	-0.00022237	-0.5897	-0.00032395	549.3372560297237	68.425	0.93625	68.444	68.004	68.941	0.018913					77	24	4	0	0	0	0.091713	3	8112	8112;8125;8137		113.41	19.405	1	8727300			66986	6321	47156	47223	72372;72373;72374	72372					0.1159798029407284
RLIPAVPSI	9	Unmodified	_RLIPAVPSI_					0	0	0		nc|ENSG00000186377|Q8N118-3|CYP4X1;nc|ENSG00000186377|Q8N118-2|CYP4X1;ENSG00000186377|ENST00000371901|CYP4X1	nc|ENSG00000186377|Q8N118-3|CYP4X1	nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.31085205078125	2	483.310752	964.606951	-0.25527	-0.00012338	0.77896	0.00037648	0.52368	0.0002531	483.3108401721876	67.045	0.93794	67.045	66.63	67.568	0					68	22	4	0	0	0	0.50848	1	7987	7987		58.782	0	1	2132700			66987	9544	47157	47224	72375	72375					0.12323227582214713
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3316345214844	2	506.331685	1010.64882	-0.42973	-0.00021759	0.3864	0.00019565	-0.043336	-2.1942E-05	506.3317028261704	73.416	1.0122	73.416	73.072	74.084	0					53	25	4	0	0	0	0.1158	3	8966	8957;8966;8979		107.01	32.814	1	4454900			66988	10173	47158	47225	72376;72377;72378	72377					0.14391783270752967
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.33154296875	2	506.331685	1010.64882	-0.30446	-0.00015416	0.4082	0.00020668	0.10374	5.2525E-05	506.3317550346158	73.75	0.89143	73.479	73.167	74.059	-0.27126					47	22	4	0	0	0	0.091713	4	8969	8969;8977;8991;9002		113.41	42.116	1	4400700			66989	10173	47158	47225	72379;72380;72381;72382	72379					0.14391783270752967
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.332275390625	2	506.331685	1010.64882	-0.32059	-0.00016233	0.42044	0.00021288	0.099844	5.0554E-05	506.3317744634891	73.479	1.0069	73.489	73.217	74.224	0.0096512					56	24	4	0	0	0	0.15366	3	8902	8892;8902;8913		98.629	39.847	1	3612700			66990	10173	47158	47225	72383;72384;72385	72384					0.14391783270752967
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.331685	1010.64882	-0.13474	-6.8224E-05	0.2288	0.00011585	0.09406	4.7625E-05	506.33159569294014	73.599	0.5948	73.323	73.01	73.605	-0.2769	-0.045563	-0.00019955	NaN	113.41	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606700			66991	10173	47158	47225							0.14391783270752967
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	506.331685	1010.64882	-0.48988	-0.00024804	0.58317	0.00029528	0.093282	4.7232E-05	506.33177311496365	73.607	0.58938	73.342	73.017	73.607	-0.26479	-0.026097	0.00015931	NaN	113.41	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506390			66992	10173	47158	47225							0.14391783270752967
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.331685	1010.64882	-0.47896	-0.00024251	0.50474	0.00025556	0.025774	1.305E-05	506.3316883583999	73.351	0.63429	73.161	72.927	73.561	-0.19027	-0.20748	7.9884E-05	NaN	113.41	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432100			66993	10173	47158	47225							0.14391783270752967
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.806640625	2	528.806031	1055.59751	-0.73142	-0.00038678	0.050654	2.6786E-05	-0.68076	-0.00035999	528.8060386037538	49.774	0.91785	49.774	49.324	50.242	0					84	25	5	0	0	0	0.015752	4	5174	5149;5161;5174;5189		158.07	48.596	1	8137900			66994	3137	47159	47226	72386;72387;72388;72389	72388					0.07193414506036788
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8060302734375	2	528.806031	1055.59751	-0.26692	-0.00014115	-0.37102	-0.0001962	-0.63793	-0.00033734	528.8058105555884	50.007	0.80495	49.855	49.482	50.287	-0.1512					76	22	5	0	0	0	0.013065	4	5179	5157;5168;5179;5193		171.53	50.663	1	8958300			66995	3137	47159	47226	72390;72391;72392;72393	72392					0.07193414506036788
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8060302734375	2	528.806031	1055.59751	-0.71701	-0.00037916	0.17529	9.2692E-05	-0.54172	-0.00028647	528.8060511773355	49.707	0.85186	49.781	49.352	50.204	0.074192					75	23	5	0	0	0	0.015752	4	5081	5069;5081;5093;5107		158.07	46.116	1	9093400			66996	3137	47159	47226	72394;72395;72396;72397	72395					0.07193414506036788
RLIQESPTL	9	Unmodified	_RLIQESPTL_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.806031	1055.59751	-0.29725	-0.00015719	0.52161	0.00027583	0.22435	0.00011864	528.8061553806017	50.083	0.59863	49.803	49.547	50.145	-0.27977	0.021851	0.00053472	NaN	171.53	46	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161400			66997	3137	47159	47226							0.07193414506036788
RLIQLIQPL	9	Unmodified	_RLIQLIQPL_					0	0	0			REV__ENSG00000215262|ENST00000399881|KCNU1	REV__ENSG00000215262|ENST00000399881|KCNU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.326416015625	2	547.358234	1092.70191	-0.65023	-0.00035591	-0.77658	-0.00042507	-1.4268	-0.00078098	547.3578554865531	41.354	0.31178	41.377	41.219	41.53	0.023006					13	8	2	0	0	0	0.023355	1	3670	3670		88.643	9.1918	1	215500	+		66998	28803	47160	47227	72398	72398					0.15927161053423333
RLIRVFRV	8	Unmodified	_RLIRVFRV_					0	0	0			REV__nc|ENSG00000129159|P48547|KCNC1;REV__nc|ENSG00000166006|Q96PR1-4|KCNC2;REV__nc|ENSG00000116396|Q03721-2|KCNC4;REV__ENSG00000131398|ENST00000477616|KCNC3	REV__nc|ENSG00000129159|P48547|KCNC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.809814453125	2	529.85091	1057.68727	-0.57129	-0.0003027	-0.89754	-0.00047556	-1.4688	-0.00077826	529.8503638200092	17.546	0.24838	17.339	17.166	17.414	-0.20669					7	4	2	0	0	0	0.027866	1	191	191		19.36	7.849	1	21000	+		66999	23034;25957;33686;23208	47161	47228	72399	72399					0.16073133695931574
RLISLREKHS	10	Unmodified	_RLISLREKHS_					0	0	0			REV__ENSG00000149929|ENST00000279392|HIRIP3	REV__ENSG00000149929|ENST00000279392|HIRIP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.86962890625	2	619.870028	1237.7255	-0.48862	-0.00030288	-0.60882	-0.00037739	-1.0974	-0.00068027	619.8694795106298	92.383	2.3242	92.392	91.112	93.437	0.009407					190	55	4	0	0	0	1.118	1	11670	11670		30.318	1.1477	1	1566400	+		67000	24706	47162	47229	72400	72400					0.11614974819940471
RLISQIVSSI	10	Unmodified	_RLISQIVSSI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.3430786132812	2	558.342781	1114.67101	-0.29382	-0.00016405	-0.16232	-9.0633E-05	-0.45614	-0.00025468	558.3425963492571	66.821	2.0085	66.821	66.552	68.56	0					126	50	4	0	0	0	0.44183	2	7972	7948;7972		94.409	10.762	1	11707000			67001	3976;7700	47163	47230	72401;72402	72402					0.11825962948501001
RLISQIVSSI	10	Unmodified	_RLISQIVSSI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.3405151367188	2	558.342781	1114.67101	-0.51005	-0.00028478	-0.18477	-0.00010317	-0.69482	-0.00038795	558.3425965955006	67.18	2.0152	66.898	66.63	68.645	-0.28148					162	50	5	0	0	0	0.41983	2	7973	7973;7985		96.665	10.714	1	10552000			67002	3976;7700	47163	47230	72403;72404	72403					0.11825962948501001
RLISQIVSSI	10	Unmodified	_RLISQIVSSI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3436889648438	2	558.342781	1114.67101	0.063281	3.5333E-05	-0.68579	-0.0003829	-0.62251	-0.00034757	558.3423337379335	67.081	2.0692	67.105	66.769	68.838	0.023903					159	52	5	0	0	0	0.62511	1	7931	7931		74.165	5.3189	1	9358700			67003	3976;7700	47163	47230	72405	72405					0.11825962948501001
RLITLRIEFG	10	Unmodified	_RLITLRIEFG_					0	0	0			REV__nc|ENSG00000170537|Q7Z402-2|TMC7	REV__nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.5840148925781	3	406.583674	1216.72919	0.36669	0.00014909	0.40293	0.00016383	0.76962	0.00031291	406.5837615324145	110.7	0.44067	110.58	110.51	110.95	-0.12525					30	15	2	0	0	0	1.1165	1	13611	13611		19.263	2.5453	1	830120	+		67004	26484	47164	47231	72406	72406					0.12949644593800258
RLIVPKAAI	9	Unmodified	_RLIVPKAAI_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.7958068847656	2	490.834394	979.654236	-0.17973	-8.8217E-05	-0.27972	-0.0001373	-0.45945	-0.00022551	490.8342354553435	49.17	0.40571	48.89	48.756	49.161	-0.27977					13	10	2	0	0	0	0.024535	1	4907	4907		33.516	0	1	110760			67005	5411	47165	47232	72407	72407					0.1635950685321177
RLIVPKAAI	9	Unmodified	_RLIVPKAAI_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.834394	979.654236	-0.33435	-0.00016411	0.42031	0.0002063	0.085958	4.2191E-05	490.8345648797557	48.663	0.31295	48.663	48.482	48.795	0	-0.087346	0.00013381	NaN	33.516	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177550			67006	5411	47165	47232							0.1635950685321177
RLIVPKAAI	9	Unmodified	_RLIVPKAAI_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.834394	979.654236	-1.2715	-0.00062409	0.92426	0.00045366	-0.34723	-0.00017043	490.83487262249133	48.922	0.33699	48.821	48.655	48.992	-0.1008	0.071004	0.00062852	NaN	33.516	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122890			67007	5411	47165	47232							0.1635950685321177
RLKAKEYSL	9	Unmodified	_RLKAKEYSL_					0	0	0		ENST00000367760.7_1_1:170699481-170705324:+|nuORF;ENSG00000116132|ENST00000239461|PRRX1	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.329833984375	2	554.329673	1106.64479	-1.2415	-0.00068818	0.94716	0.00052504	-0.29431	-0.00016314	554.3300834410584	28.505	0.96317	28.26	27.961	28.924	-0.24524					49	22	4	0	0	0	0.29158	2	1669	1669;1686		76.774	27.333	1	1727800			67008	3522	47166	47233	72408;72409	72408					0.09573693777042536
RLKAKEYSL	9	Unmodified	_RLKAKEYSL_					0	0	0		ENST00000367760.7_1_1:170699481-170705324:+|nuORF;ENSG00000116132|ENST00000239461|PRRX1	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3297729492188	2	554.329673	1106.64479	-0.65211	-0.00036148	0.37369	0.00020715	-0.27842	-0.00015433	554.329755686451	28.38	1.007	28.211	27.847	28.854	-0.16897					60	23	4	0	0	0	0.086035	2	1657	1645;1657		115.49	13.893	1	1545200			67009	3522	47166	47233	72410;72411	72411					0.09573693777042536
RLKAKEYSL	9	Unmodified	_RLKAKEYSL_					0	0	0		ENST00000367760.7_1_1:170699481-170705324:+|nuORF;ENSG00000116132|ENST00000239461|PRRX1	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3298950195312	2	554.329673	1106.64479	-0.636	-0.00035255	0.48263	0.00026754	-0.15337	-8.5017E-05	554.3298193137782	28.428	1.0411	28.276	28	29.041	-0.15195					67	24	4	0	0	0	0.247	1	1638	1638		82.75	13.904	1	2170200			67010	3522	47166	47233	72412	72412					0.09573693777042536
RLKAKEYSL	9	Unmodified	_RLKAKEYSL_					0	0	0		ENST00000367760.7_1_1:170699481-170705324:+|nuORF;ENSG00000116132|ENST00000239461|PRRX1	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.329673	1106.64479	-0.78532	-0.00043533	1.0185	0.00056458	0.23316	0.00012925	554.8323317028369	28.492	0.20987	28.488	28.33	28.54	-0.0042019	0.1793	0.00041877	NaN	115.49	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48807			67011	3522	47166	47233							0.09573693777042536
RLKATGTWETL	11	Unmodified	_RLKATGTWETL_					0	0	0		ENST00000547018.5_1_12:46345524-46385838:-|nuORF	ENST00000547018.5_1_12:46345524-46385838:-|nuORF	ENST00000547018.5_1_12:46345524-46385838:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7746887207031	3	425.906705	1274.69829	-0.048653	-2.0722E-05	0.13438	5.7235E-05	0.08573	3.6513E-05	425.90649662991603	42.232	0.75418	42.232	41.888	42.642	0					47	21	3	0	0	0	0.024734	1	3880	3880		21.78	1.75	1	799790			67012	16519	47167	47234	72413	72413					0.07192446488920723
RLKEAYSV	8	Unmodified	_RLKEAYSV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.27410888671875	2	483.274367	964.53418	-1.073	-0.00051857	0.40022	0.00019341	-0.67282	-0.00032516	483.27460517941046	30.404	1.2801	30.404	29.977	31.257	0					90	30	5	0	0	0	0.35998	3	1937	1928;1937;1949		102.77	23.061	1	9871600			67013	8454	47168	47235	72414;72415;72416	72415					0.05049473788801606
RLKEAYSV	8	Unmodified	_RLKEAYSV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.27423095703125	2	483.274367	964.53418	-0.53374	-0.00025794	0.0030889	1.4928E-06	-0.53065	-0.00025645	483.27440438118646	30.343	1.2938	30.352	30.002	31.296	0.0086689					85	30	4	0	0	0	0.50717	2	1911	1911;1934		84.916	16.129	1	9559800			67014	8454	47168	47235	72417;72418	72417					0.05049473788801606
RLKEAYSV	8	Unmodified	_RLKEAYSV_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.2741394042969	2	483.274367	964.53418	-1.2457	-0.00060203	0.61656	0.00029797	-0.62916	-0.00030406	483.2746808228168	30.047	1.4127	30.122	29.759	31.171	0.074314					92	33	4	0	0	0	0.32162	4	1840	1830;1840;1852;1865		108.09	25.782	1	9287700			67015	8454	47168	47235	72419;72420;72421;72422	72420					0.05049473788801606
RLKGLLSSL	9	Unmodified	_RLKGLLSSL_					0	0	0			REV__ENST00000361317.6_1_20:62688923-62693812:+|nuORF	REV__ENST00000361317.6_1_20:62688923-62693812:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.78497314453125	2	493.821484	985.628415	0.39509	0.0001951	-0.85706	-0.00042323	-0.46197	-0.00022813	493.8209869752662	41.16	0.4879	41.16	40.908	41.396	0					19	13	2	0	0	0	0.023417	1	3718	3718		68.787	10.005	1	161550	+		67016	30937	47169	47236	72423	72423					0.13502612610943743
RLKGLLSSL	9	Unmodified	_RLKGLLSSL_					0	0	0			REV__ENST00000361317.6_1_20:62688923-62693812:+|nuORF	REV__ENST00000361317.6_1_20:62688923-62693812:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7852783203125	2	493.821484	985.628415	0.0010741	5.3041E-07	-0.1045	-5.1604E-05	-0.10343	-5.1074E-05	493.8211890861846	41.315	0.672	41.338	41.182	41.854	0.023006					25	18	2	0	0	0	0.023417	1	3686	3686		79.451	10.664	1	170280	+		67017	30937	47169	47236	72424	72424					0.13502612610943743
RLKGLNRL	8	Unmodified	_RLKGLNRL_					0	0	0			REV__CDKN2A|p.D156Ifs*37|2|0.69|ENSG00000147889|chr9:21968235-21968235|G/-|frameshift_variant	REV__CDKN2A|p.D156Ifs*37|2|0.69|ENSG00000147889|chr9:21968235-21968235|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.28326416015625	2	485.319443	968.624333	-0.77557	-0.0003764	3.9186	0.0019018	3.143	0.0015254	485.321738987852	21.528	0.37929	21.6	21.401	21.781	0.071487					10	7	2	0	0	0	0.027866	1	640	640		65.803	26.55	1	21788	+		67018	19287	47170	47237	72425	72425					0.13876567907891513
RLKHLQKRFLE	11	Unmodified	_RLKHLQKRFLE_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2519836425781	3	489.96841	1466.8834	-0.59064	-0.00028939	-0.049228	-2.412E-05	-0.63987	-0.00031351	489.96933189440483	79.797	0.37791	79.818	79.519	79.897	0.021446					11	8	2	0	0	0	0.024876	1	9830	9830		13.508	0	1	38994	+		67019	21072	47171	47238	72426	72426					0.16863474079150365
RLKHLQKRFLE	11	Unmodified	_RLKHLQKRFLE_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	489.96841	1466.8834	-1.0481	-0.00051354	-3.059	-0.0014988	-4.1071	-0.0020124	490.3007303328852	80.349	0.37677	80.197	79.924	80.301	-0.15168	0.19363	-0.002807	NaN	13.508	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40734	+		67020	21072	47171	47238							0.16863474079150365
RLKHLQKRFLE	11	Unmodified	_RLKHLQKRFLE_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	489.96841	1466.8834	0.29094	0.00014255	0.37196	0.00018225	0.6629	0.0003248	489.9686295566425	80.141	0.20756	79.995	79.828	80.035	-0.146	-0.0083582	0.0022363	NaN	13.508	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39557	+		67021	21072	47171	47238							0.16863474079150365
RLKIGKGTGP	10	Unmodified	_RLKIGKGTGP_					0	0	0		ENSG00000071246|ENST00000167106|VASH1	ENSG00000071246|ENST00000167106|VASH1	ENSG00000071246|ENST00000167106|VASH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.824951171875	2	513.824558	1025.63456	-1.1869	-0.00060988	0.74861	0.00038465	-0.43833	-0.00022522	513.825017437267	39.844	1.2054	39.868	39.526	40.731	0.023727					88	33	5	0	0	0	1.089	1	3395	3395		34.173	0	1	11651000			67022	1450	47172	47239	72427	72427					0.12277130842494444
RLKKVPAKKLV	11	Unmodified	_RLKKVPAKKLV_					0	0	0		ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	427.302734375	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.952	1	69.73	69.23	70.23	-0.22245								0	0	0	1.7088	1	8125	8125		5.6988	2.4875	1				67023	13778	47173	47240	72428	72428					0.2580734920395571
RLKLRATNA	9	Unmodified	_RLKLRATNA_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.3140258789062	2	521.827632	1041.64071	-0.17506	-9.1351E-05	1.208	0.00063035	1.0329	0.000539	521.8283832889828	46.204	0.37247	46.108	45.887	46.259	-0.096649					11	9	2	0	0	0	0.024523	1	4410	4410		21.96	8.1846	1	93722	+		67024	19975	47174	47241	72429	72429					0.12155649073974928
RLKLRATNA	9	Unmodified	_RLKLRATNA_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.827632	1041.64071	-0.5928	-0.00030934	2.4559	0.0012815	1.8631	0.00097219	521.8286900445622	46.274	0.2646	46.072	45.892	46.157	-0.20226	-0.017987	0.00033879	NaN	21.96	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113470	+		67025	19975	47174	47241							0.12155649073974928
RLKNYGVLHV	10	Unmodified	_RLKNYGVLHV_					0	0	0		nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.2388916015625	3	400.240018	1197.69823	0.86547	0.0003464	-3.3531	-0.001342	-2.4876	-0.00099565	400.2385785122578	27.415	0.82007	27.415	27.179	27.999	0					47	21	3	0	0	0	1.1266	1	1502	1502		29.17	0.59333	1	932240			67026	8933	47175	47242	72430	72430					0.1072849127954214
RLKNYGVLHV	10	Unmodified	_RLKNYGVLHV_					0	0	0		nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	400.240018	1197.69823	0.18387	7.3591E-05	-2.4365	-0.00097517	-2.2526	-0.00090158	400.2388843558239	27.344	0.82261	27.331	27.134	27.957	-0.012983	-0.006748	0.0010866	NaN	29.17	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	764830			67027	8933	47175	47242							0.1072849127954214
RLKNYGVLHV	10	Unmodified	_RLKNYGVLHV_					0	0	0		nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	400.240018	1197.69823	1.8924	0.0007574	-4.3364	-0.0017356	-2.444	-0.00097819	400.23813370427223	27.187	0.69575	27.268	27.064	27.759	0.081291	-0.070345	-0.0011946	NaN	29.17	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	760950			67028	8933	47175	47242							0.1072849127954214
RLKPPSNVV	9	Unmodified	_RLKPPSNVV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.310791015625	2	505.311284	1008.60801	-0.8173	-0.00041299	0.29941	0.0001513	-0.51788	-0.00026169	505.3112746953378	35.25	2.0842	35.25	34.011	36.096	0					122	54	4	0	0	0	0.10174	2	2702	2702;2714		110.12	19.75	1	4036700			67029	2021	47176	47243	72431;72432	72431					0.10405441951127159
RLKPPSNVV	9	Unmodified	_RLKPPSNVV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3111267089844	2	505.311284	1008.60801	-1.0151	-0.00051294	0.54684	0.00027632	-0.46825	-0.00023661	505.3113811755791	35.086	2.1649	35.065	33.852	36.017	-0.021763					124	56	4	0	0	0	0.17845	3	2656	2656;2668;2680		93.143	18.1	1	3619200			67030	2021	47176	47243	72433;72434;72435	72433					0.10405441951127159
RLKPPSNVV	9	Unmodified	_RLKPPSNVV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.3109130859375	2	505.311284	1008.60801	-0.42724	-0.00021589	-0.17236	-8.7093E-05	-0.5996	-0.00030298	505.3110421705399	35.196	2.0051	35.24	34.167	36.172	0.044056					116	52	5	0	0	0	0.2101	3	2660	2623;2634;2660		87.696	7.9839	1	3331600			67031	2021	47176	47243	72436;72437;72438	72438					0.10405441951127159
RLKQDTYGD	9	Unmodified	_RLKQDTYGD_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.2893676757812	2	548.275095	1094.53564	0.15112	8.2854E-05	0.713	0.00039092	0.86412	0.00047378	548.2751102124969	57.205	0.42754	57.003	56.819	57.247	-0.20209					16	11	2	0	0	0	0.024466	1	6252	6252		39.253	17.293	1	240000			67032	10088	47177	47244	72439	72439					-0.007849369131008643
RLKQKAESL	9	Unmodified	_RLKQKAESL_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18;SIL1-DNAJC18|1|fusion	ENSG00000170464|ENST00000302060|DNAJC18;SIL1-DNAJC18|1|fusion	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.8261108398438	2	536.827298	1071.64004	-1.7615	-0.00094561	-0.88117	-0.00047303	-2.6426	-0.0014186	536.8267983005112	21.109	0.44366	20.897	20.773	21.216	-0.2128					19	8	3	0	0	0	0.72875	1	612	612		44.117	1.2525	1	401400			67033	8043;37874	47178	47245	72440	72440					0.10708809634274985
RLKRLCSS	8	Unmodified	_RLKRLCSS_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A;ENST00000488904.1_1_3:100290155-100295859:+|nuORF	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7712097167969	2	481.781836	961.549119	-0.027219	-1.3114E-05	0.15513	7.4737E-05	0.12791	6.1623E-05	481.78160222280286	96.241	0.49384	96.241	96.034	96.527	0					19	11	2	0	0	0	0.027866	1	12240	12240		7.6903	0	1	68758			67034	9045	47179	47246	72441	72441					0.06680642385140345
RLKSYRND	8	Unmodified	_RLKSYRND_					0	0	0		nc|ENSG00000099256|Q9NRG1-2|PRTFDC1;ENSG00000099256|ENST00000320152|PRTFDC1	nc|ENSG00000099256|Q9NRG1-2|PRTFDC1	nc|ENSG00000099256|Q9NRG1-2|PRTFDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7957153320312	2	526.285797	1050.55704	-0.56459	-0.00029713	4.1378	0.0021777	3.5732	0.0018805	526.7914631826925	52.06	0.45316	51.913	51.642	52.095	-0.14735					31	12	4	0	0	0	0.027866	1	5561	5561		14.865	0.20078	1	524690			67035	2065	47180	47247	72442	72442					0.03378492906290376
RLKTSPRR	8	Unmodified	_RLKTSPRR_					0	0	0		nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3197326660156	2	507.319974	1012.6254	0.66871	0.00033925	-1.0936	-0.00055482	-0.42492	-0.00021557	507.3191905600104	20.666	1.1245	20.734	20.464	21.589	0.068901					40	22	4	0	0	0	0.96769	1	524	524		42.396	6.7778	1	291750			67036	18438	47181	47248	72443	72443					0.11958782276781221
RLKTVESQ	8	Unmodified	_RLKTVESQ_					0	0	0			REV__ENST00000487120.5_1_16:67848301-67859829:+|nuORF	REV__ENST00000487120.5_1_16:67848301-67859829:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.3031311035156	2	480.777274	959.539994	0.38639	0.00018577	1.0361	0.00049814	1.4225	0.0006839	480.7777450959254	18.298	0.54113	18.167	17.86	18.401	-0.13147					16	10	2	0	0	0	0.027866	1	285	285		20.947	0	1	37948	+		67037	21338	47182	47249	72444	72444					0.058605723004689025
RLKTVESQ	8	Unmodified	_RLKTVESQ_					0	0	0			REV__ENST00000487120.5_1_16:67848301-67859829:+|nuORF	REV__ENST00000487120.5_1_16:67848301-67859829:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.777274	959.539994	3.4974	0.0016815	-1.8939	-0.00091054	1.6035	0.00077092	480.77631532651486	18.079	0.53837	18.079	17.746	18.284	0	-0.044047	-0.0011928	NaN	14.865	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29182	+		67038	21338	47182	47249							0.058605723004689025
RLKVLANI	8	Unmodified	_RLKVLANI_					0	0	0		chr14:22499749-22547506|264|12.75|0.0|20.28|+|2|TRAJ40,TRAC|1	chr14:22499749-22547506|264|12.75|0.0|20.28|+|2|TRAJ40,TRAC|1	chr14:22499749-22547506|264|12.75|0.0|20.28|+|2|TRAJ40,TRAC|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	2	463.810919	925.607286	0.53137	0.00024646	-0.43842	-0.00020334	0.092955	4.3114E-05	463.81064475034265	42.068	0.40024	42.094	41.821	42.221	0.026012					20	11	2	0	0	0	0.027866	1	3738	3738		25.45	6.0902	1	206240			67039	335	47183	47250	72445	72445					0.1415064730207405
RLKWLPPS	8	Unmodified	_RLKWLPPS_					0	0	0		ENST00000260276.7_1_11:111750228-111753254:+|nuORF	ENST00000260276.7_1_11:111750228-111753254:+|nuORF	ENST00000260276.7_1_11:111750228-111753254:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.80389404296875	2	498.803094	995.591636	-0.048509	-2.4196E-05	1.2296	0.00061332	1.1811	0.00058913	498.80359687571143	52.78	1.1183	52.653	52.353	53.471	-0.12705					100	28	5	0	0	0	1.0574	1	5549	5549		21.702	0	1	22958000			67040	11446	47184	47251	72446	72446					0.09366360785031702
RLKWRQRGYKM	11	Unmodified	_RLKWRQRGYKM_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.30810546875	3	507.957628	1520.85106	-1.0195	-0.00051786	-0.43873	-0.00022285	-1.4582	-0.00074072	508.29163817177374	43.558	0.20888	43.339	43.246	43.455	-0.21939					8	5	2	0	0	0	0.024851	1	3975	3975		9.6461	0.43434	1	115630	+		67041	20084	47185	47252	72447	72447					0.1114636340450943
RLLAHRSLTE	10	Unmodified	_RLLAHRSLTE_					0	0	0		ENSG00000116218|ENST00000367615|NPHS2	ENSG00000116218|ENST00000367615|NPHS2	ENSG00000116218|ENST00000367615|NPHS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.2984008789062	2	598.348929	1194.6833	-0.37679	-0.00022545	0.11268	6.7419E-05	-0.26412	-0.00015803	598.349257218213	83.596	1.7563	83.458	81.915	83.671	-0.13861					65	40	2	0	0	0	0.03519	1	9908	9908		24.519	0	1	164130			67042	3536	47186	47253	72448	72448					0.09374999411556928
RLLALGTPEN	10	Unmodified	_RLLALGTPEN_					0	0	0		CON__Q6T181	CON__Q6T181	CON__Q6T181	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.3071899414062	2	542.31148	1082.60841	-0.43231	-0.00023445	-4.3496	-0.0023588	-4.7819	-0.0025933	542.3090793033791	17.746	0.29987	17.539	17.414	17.714	-0.20669					11	5	3	0	0	0	1.118	1	217	217		30.318	2.0634	1	64310		+	67043	562	47187	47254	72449	72449					0.07040816880339662
RLLASLSH	8	Unmodified	_RLLASLSH_					0	0	0		ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.26171875	2	448.769252	895.52395	-0.32744	-0.00014695	1.5224	0.00068322	1.195	0.00053628	448.76855473544356	31.321	0.72793	31.168	30.806	31.534	-0.15231					44	18	4	0	0	0	0.027866	1	2065	2065		8.2313	0	1	341000			67044	2392	47188	47255	72450	72450					0.07200910854237463
RLLDGAFKL	9	Unmodified	_RLLDGAFKL_					0	0	0		nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.8135375976562	2	516.813659	1031.61277	-0.46818	-0.00024196	-0.14253	-7.3661E-05	-0.61071	-0.00031562	516.8135027189908	60.243	1.6688	60.243	59.745	61.414	0					103	44	4	0	0	0	0.30449	1	6929	6929		75.043	0.78827	1	3659800			67045	1522	47189	47256	72451	72451					0.09822326093899392
RLLDGAFKL	9	Unmodified	_RLLDGAFKL_					0	0	0		nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.8136596679688	2	516.813659	1031.61277	-0.58173	-0.00030065	-0.076089	-3.9324E-05	-0.65782	-0.00033997	516.8135168879475	60.483	1.5043	60.269	59.924	61.429	-0.2134					98	39	4	0	0	0	0.26413	1	6924	6924		80.455	0.74203	1	3901300			67046	1522	47189	47256	72452	72452					0.09822326093899392
RLLDGAFKL	9	Unmodified	_RLLDGAFKL_					0	0	0		nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460|CLASP1	nc|ENSG00000074054|Q7Z460|CLASP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.8139038085938	2	516.813659	1031.61277	-2.1407	-0.0011063	1.579	0.00081604	-0.56167	-0.00029028	516.814407922739	60.145	1.5788	60.224	59.863	61.442	0.078888					103	41	4	0	0	0	0.26966	2	6838	6826;6838		79.713	10.677	1	3722500			67047	1522	47189	47256	72453;72454	72454					0.09822326093899392
RLLDSEIKI	9	Unmodified	_RLLDSEIKI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8296508789062	2	543.829506	1085.64446	-1.0843	-0.00058967	0.55882	0.0003039	-0.52547	-0.00028576	543.8297172983245	54.608	1.5709	54.608	54.144	55.715	0					93	44	4	0	0	0	0.14181	3	5991	5991;6003;6016		101.25	8.2122	1	6906000			67048	7485;16179	47190	47257	72455;72456;72457	72455					0.10506274057183873
RLLDSEIKI	9	Unmodified	_RLLDSEIKI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8294067382812	2	543.829506	1085.64446	-0.72459	-0.00039405	0.33242	0.00018078	-0.39217	-0.00021328	543.829629819424	54.675	0.9994	54.525	54.266	55.266	-0.15036					80	28	5	0	0	0	0.025498	3	5973	5973;5985;5999		145.16	19.342	1	6921300			67049	7485;16179	47190	47257	72458;72459;72460	72458					0.10506274057183873
RLLDSEIKI	9	Unmodified	_RLLDSEIKI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8295288085938	2	543.829506	1085.64446	-0.18623	-0.00010128	-0.20752	-0.00011286	-0.39375	-0.00021414	543.8293124375459	54.411	0.92745	54.509	54.188	55.116	0.098015					80	26	4	0	0	0	0.014918	2	5870	5870;5880		162.25	28.44	1	7428500			67050	7485;16179	47190	47257	72461;72462	72461					0.10506274057183873
RLLDSEIKI	9	Unmodified	_RLLDSEIKI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	543.829506	1085.64446	-0.64011	-0.00034811	-0.88002	-0.00047858	-1.5201	-0.00082669	543.8284274333965	54.607	0.76016	54.461	54.077	54.837	-0.14609	-0.051999	-0.0010625	NaN	162.25	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1342700			67051	7485;16179	47190	47257							0.10506274057183873
RLLDSEIKI	9	Unmodified	_RLLDSEIKI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	543.829506	1085.64446	-0.26055	-0.0001417	-0.6852	-0.00037263	-0.94575	-0.00051433	543.8288895498989	54.721	0.46957	54.49	54.315	54.785	-0.23087	-0.023076	-0.00085061	NaN	162.25	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1280100			67052	7485;16179	47190	47257							0.10506274057183873
RLLDSEIKI	9	Unmodified	_RLLDSEIKI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	543.829506	1085.64446	0.26118	0.00014204	-0.86276	-0.0004692	-0.60158	-0.00032716	543.8289502052926	54.691	0.51587	54.485	54.279	54.794	-0.20613	-0.027826	-0.0010437	NaN	162.25	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1499600			67053	7485;16179	47190	47257							0.10506274057183873
RLLDSVRAI	9	Unmodified	_RLLDSVRAI_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2448120117188	2	521.822015	1041.62948	-0.39961	-0.00020853	0.5836	0.00030453	0.18399	9.6009E-05	521.8221581890616	50.571	0.66107	50.652	50.41	51.071	0.08099					51	18	4	0	0	0	0.023835	1	5226	5226		90.601	31.819	1	2535400			67054	8896	47191	47258	72463	72463					0.11032826979840138
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.32415771484375	2	505.32386	1008.63317	-0.41311	-0.00020875	-0.55573	-0.00028082	-0.96884	-0.00048958	505.3239398964379	79.056	3.538	79.056	78.616	82.154	0					279	85	6	0	0	0	0.50848	1	9830	9830		58.782	0.55203	1	98664000			67055	9173	47192	47259	72464	72464					0.12919496753693238
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.323974609375	2	505.32386	1008.63317	-0.75385	-0.00038094	-0.27713	-0.00014004	-1.031	-0.00052098	505.324085613359	79.222	5.1637	79.05	78.611	83.775	-0.17226					329	123	6	0	0	0	0.29158	2	9765	9765;9789		76.774	15.802	1	92209000			67056	9173	47192	47259	72465;72466	72465					0.12919496753693238
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.32379150390625	2	505.32386	1008.63317	-0.021531	-1.088E-05	-1.0461	-0.00052863	-1.0676	-0.00053951	505.32367507392587	79.153	5.1565	79.172	78.693	83.85	0.018677					323	123	5	0	0	0	0.29158	1	9778	9778		76.774	2.5191	1	98007000			67057	9173	47192	47259	72467	72467					0.12919496753693238
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.3240966796875	2	505.32386	1008.63317	0.43061	0.0002176	-1.1927	-0.00060271	-0.76212	-0.00038512	505.3233501309143	79.104	3.6681	78.849	78.471	82.139	-0.25471					219	87	5	0	0	0	0.20967	3	9445	9421;9445;9475		87.754	21.325	1	36200000			67058	9173	47192	47259	72468;72469;72470	72469					0.12919496753693238
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3239440917969	2	505.32386	1008.63317	0.12083	6.106E-05	-0.87121	-0.00044024	-0.75037	-0.00037918	505.32350651286185	79.073	3.4594	78.842	78.346	81.805	-0.23141					204	82	5	0	0	0	0.20967	3	9483	9447;9471;9483		87.754	26.782	1	35664000			67059	9173	47192	47259	72471;72472;72473	72473					0.12919496753693238
RLLDVLAPL	9	Unmodified	_RLLDVLAPL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.3236389160156	2	505.32386	1008.63317	-0.071224	-3.5991E-05	-0.74214	-0.00037502	-0.81337	-0.00041101	505.32356722396315	78.994	3.687	78.843	78.432	82.119	-0.15051					219	87	6	0	0	0	0.23085	3	9414	9402;9414;9438		84.916	16.129	1	35565000			67060	9173	47192	47259	72474;72475;72476	72475					0.12919496753693238
RLLDYVATV	9	Unmodified	_RLLDYVATV_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.3035888671875	2	525.303124	1048.5917	-0.59576	-0.00031295	0.17096	8.9803E-05	-0.4248	-0.00022315	525.3031122907082	65.687	0.93439	65.414	64.94	65.874	-0.27282					47	25	2	0	0	0	0.28753	2	7754	7754;7766		77.318	16.346	1	5614600			67061	186	47193	47260	72477;72478	72477					0.06934315994340068
RLLDYVATV	9	Unmodified	_RLLDYVATV_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.302978515625	2	525.303124	1048.5917	0.0061304	3.2203E-06	-0.49041	-0.00025761	-0.48428	-0.00025439	525.302752178147	65.369	0.93059	65.407	64.928	65.859	0.037384					42	25	2	0	0	0	0.37611	2	7664	7664;7677		67.494	8.7117	1	6365400			67062	186	47193	47260	72479;72480	72479					0.06934315994340068
RLLDYVATV	9	Unmodified	_RLLDYVATV_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.304931640625	2	525.303124	1048.5917	-0.44087	-0.00023159	0.12179	6.3977E-05	-0.31908	-0.00016761	525.3030313874978	65.634	0.78345	65.393	65.045	65.828	-0.24145					54	18	4	0	0	0	0.6238	1	7503	7503		51.193	5.2407	1	1985400			67063	186	47193	47260	72481	72481					0.06934315994340068
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.8239135742188	2	552.824224	1103.63389	-1.131	-0.00062524	0.52843	0.00029213	-0.60256	-0.00033311	552.8243599485735	75.407	1.6422	75.407	74.995	76.637	0					114	42	4	0	0	0	0.14181	5	9277	9228;9239;9251;9263;9277		101.25	33.88	1	9563300			67064	9974	47194	47261	72482;72483;72484;72485;72486	72486					0.08622291402753035
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8240356445312	2	552.824224	1103.63389	-0.7613	-0.00042087	0.22044	0.00012187	-0.54086	-0.000299	552.824178062045	75.64	1.6781	75.395	75.037	76.715	-0.24455					117	43	4	0	0	0	0.14181	4	9262	9238;9250;9262;9275		101.25	46.476	1	10668000			67065	9974	47194	47261	72487;72488;72489;72490	72489					0.08622291402753035
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8248901367188	2	552.824224	1103.63389	0.13901	7.6846E-05	-0.5619	-0.00031063	-0.42289	-0.00023379	552.8237502708116	75.479	1.6422	75.49	75.132	76.774	0.010368					115	42	4	0	0	0	0.18994	4	9191	9170;9180;9191;9204		90.601	24.172	1	10848000			67066	9974	47194	47261	72491;72492;72493;72494	72493					0.08622291402753035
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.8247680664062	2	552.824224	1103.63389	-0.34817	-0.00019248	-0.56778	-0.00031388	-0.91595	-0.00050636	552.8238814431255	75.624	1.7011	75.352	75.018	76.719	-0.27266					125	41	5	0	0	0	0.26413	4	8919	8919;8930;8942;8954		80.455	29.119	1	11248000			67067	9974	47194	47261	72495;72496;72497;72498	72495					0.08622291402753035
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8239135742188	2	552.824224	1103.63389	-0.28391	-0.00015695	-0.60603	-0.00033503	-0.88994	-0.00049198	552.823848959237	75.596	1.7013	75.338	75.033	76.734	-0.25866					119	41	5	0	0	0	0.26413	3	8939	8939;8951;8963		80.455	24.912	1	11988000			67068	9974	47194	47261	72499;72500;72501	72499					0.08622291402753035
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.82421875	2	552.824224	1103.63389	0.07022	3.8819E-05	-0.93819	-0.00051866	-0.86797	-0.00047984	552.8236513502135	75.429	1.827	75.254	74.943	76.77	-0.17548					114	44	5	0	0	0	0.26413	3	8907	8896;8907;8931		80.455	16.247	1	12257000			67069	9974	47194	47261	72502;72503;72504	72503					0.08622291402753035
RLLEATSYL	9	Unmodified	_RLLEATSYL_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.301025390625	2	533.300581	1064.58661	-0.58823	-0.0003137	-0.30013	-0.00016006	-0.88836	-0.00047376	533.3004691026439	61.078	1.3505	61.078	60.73	62.08	0					125	35	5	0	0	0	0.14024	6	7029	7029;7040;7051;7063;7075;7088		101.6	32.826	1	34040000			67070	741	47195	47262	72505;72506;72507;72508;72509;72510	72505					0.05690012131753974
RLLEATSYL	9	Unmodified	_RLLEATSYL_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.3003540039062	2	533.300581	1064.58661	-0.43624	-0.00023265	-0.40745	-0.0002173	-0.8437	-0.00044994	533.3004122928984	61.328	1.3379	61.101	60.781	62.119	-0.22663					117	35	5	0	0	0	0.10174	7	7086	7038;7049;7061;7073;7086;7097;7111		110.12	38.242	1	34583000			67071	741	47195	47262	72511;72512;72513;72514;72515;72516;72517	72515					0.05690012131753974
RLLEATSYL	9	Unmodified	_RLLEATSYL_					0	0	0		ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	ENSG00000004487|ENST00000400181|KDM1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.3005981445312	2	533.300581	1064.58661	-0.6081	-0.0003243	-0.29561	-0.00015765	-0.90371	-0.00048195	533.3004595170343	61.007	1.345	61.078	60.751	62.096	0.071125					114	35	5	0	0	0	0.067814	7	6963	6940;6951;6963;6975;6987;6998;7013		122.18	42.725	1	33345000			67072	741	47195	47262	72518;72519;72520;72521;72522;72523;72524	72520					0.05690012131753974
RLLEGEDAHL	10	Unmodified	_RLLEGEDAHL_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;TPT1-KRT17|1|fusion;CON__Q61782;chr17:41583140-41620659|207|161.39|0.5|8.33|-|1|KRT14,KRT17|1;chr17:16818848-16818942|521|1606.02|0.27|12.56|-|1|KRT16P6,KRT16P6|1;chr17:41610029-41610331|342|27.13|0.29|6.55|-|1|KRT16,KRT16|1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695	CON__P02533;CON__Q9QWL7	CON__Q9QWL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.803955078125	2	576.80402	1151.59349	-1.735	-0.0010007	1.0504	0.00060585	-0.68459	-0.00039488	576.8046961563281	43.317	0.69229	43.317	43.038	43.731	0					65	18	5	0	0	0	0.061759	1	4055	4055		145.16	45.781	1	2809400		+	67073	573;502	47196	47263	72525	72525					0.023753250123490943
RLLEGEDAHL	10	Unmodified	_RLLEGEDAHL_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;TPT1-KRT17|1|fusion;CON__Q61782;chr17:41583140-41620659|207|161.39|0.5|8.33|-|1|KRT14,KRT17|1;chr17:16818848-16818942|521|1606.02|0.27|12.56|-|1|KRT16P6,KRT16P6|1;chr17:41610029-41610331|342|27.13|0.29|6.55|-|1|KRT16,KRT16|1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695	CON__P02533;CON__Q9QWL7	CON__Q9QWL7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	576.80402	1151.59349	-0.8136	-0.00046929	0.26377	0.00015215	-0.54982	-0.00031714	576.8041197570883	43.525	1.0042	43.384	43.098	44.102	-0.1409	-0.018141	0.00025271	NaN	145.16	76	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2577100		+	67074	573;502	47196	47263							0.023753250123490943
RLLEGEDAHL	10	Unmodified	_RLLEGEDAHL_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;TPT1-KRT17|1|fusion;CON__Q61782;chr17:41583140-41620659|207|161.39|0.5|8.33|-|1|KRT14,KRT17|1;chr17:16818848-16818942|521|1606.02|0.27|12.56|-|1|KRT16P6,KRT16P6|1;chr17:41610029-41610331|342|27.13|0.29|6.55|-|1|KRT16,KRT16|1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695	CON__P02533;CON__Q9QWL7	CON__Q9QWL7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.80402	1151.59349	-0.16842	-9.7148E-05	-0.6429	-0.00037083	-0.81133	-0.00046798	576.8036918182542	43.443	0.9451	43.474	43.191	44.136	0.030827	0.07154	-0.00079324	NaN	145.16	68	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2679700		+	67075	573;502	47196	47263							0.023753250123490943
RLLEGEDAHL	10	Unmodified	_RLLEGEDAHL_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;TPT1-KRT17|1|fusion;CON__Q61782;chr17:41583140-41620659|207|161.39|0.5|8.33|-|1|KRT14,KRT17|1;chr17:16818848-16818942|521|1606.02|0.27|12.56|-|1|KRT16P6,KRT16P6|1;chr17:41610029-41610331|342|27.13|0.29|6.55|-|1|KRT16,KRT16|1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695	CON__P02533;CON__Q9QWL7	CON__Q9QWL7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	576.80402	1151.59349	-0.28333	-0.00016343	-1.9987	-0.0011529	-2.2821	-0.0013163	576.803400014117	43.451	0.42985	43.338	43.145	43.575	-0.11253	-0.064121	-0.0023573	NaN	145.16	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185390		+	67076	573;502	47196	47263							0.023753250123490943
RLLEGEDAHL	10	Unmodified	_RLLEGEDAHL_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;TPT1-KRT17|1|fusion;CON__Q61782;chr17:41583140-41620659|207|161.39|0.5|8.33|-|1|KRT14,KRT17|1;chr17:16818848-16818942|521|1606.02|0.27|12.56|-|1|KRT16P6,KRT16P6|1;chr17:41610029-41610331|342|27.13|0.29|6.55|-|1|KRT16,KRT16|1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695	CON__P02533;CON__Q9QWL7	CON__Q9QWL7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	576.80402	1151.59349	-1.0889	-0.00062808	-0.35486	-0.00020468	-1.4438	-0.00083277	576.8039442828566	43.659	0.3161	43.422	43.247	43.563	-0.23737	0.019425	-0.00046095	NaN	145.16	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159450		+	67077	573;502	47196	47263							0.023753250123490943
RLLEGEDAHL	10	Unmodified	_RLLEGEDAHL_					0	0	0		CON__P02533;ENSG00000186847|ENST00000167586|KRT14;CON__Q6IFX2;CON__P08779;ENSG00000186832|ENST00000301653|KRT16;TPT1-KRT17|1|fusion;CON__Q61782;chr17:41583140-41620659|207|161.39|0.5|8.33|-|1|KRT14,KRT17|1;chr17:16818848-16818942|521|1606.02|0.27|12.56|-|1|KRT16P6,KRT16P6|1;chr17:41610029-41610331|342|27.13|0.29|6.55|-|1|KRT16,KRT16|1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695	CON__P02533;CON__Q9QWL7	CON__Q9QWL7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	576.80402	1151.59349	-1.1676	-0.00067349	0.37203	0.00021459	-0.79559	-0.0004589	576.8044370111926	43.698	0.35235	43.479	43.282	43.634	-0.21939	0.076495	0.0003776	NaN	145.16	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149960		+	67078	573;502	47196	47263							0.023753250123490943
RLLEGVNQL	9	Unmodified	_RLLEGVNQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3063354492188	2	521.306198	1040.59784	-0.31123	-0.00016225	1.0616	0.0005534	0.75034	0.00039116	521.3065948918635	54.915	0.9635	54.765	54.409	55.373	-0.15036					55	27	3	0	0	0	0.26966	1	6017	6017		79.713	7.8351	1	2342400			67079	1460	47197	47264	72526	72526					0.07916834225898128
RLLEGVNQL	9	Unmodified	_RLLEGVNQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.306198	1040.59784	-0.70584	-0.00036796	1.2954	0.00067529	0.58955	0.00030733	521.3066826320666	54.813	0.8604	54.813	54.492	55.353	0	0.073403	0.00049771	NaN	79.713	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2626200			67080	1460	47197	47264							0.07916834225898128
RLLEGVNQL	9	Unmodified	_RLLEGVNQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.306198	1040.59784	-0.079132	-4.1252E-05	0.58936	0.00030724	0.51023	0.00026599	521.3064509247928	54.613	0.96307	54.711	54.294	55.257	0.098015	-0.02781	-0.0002384	NaN	79.713	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2265600			67081	1460	47197	47264							0.07916834225898128
RLLEGVNQL	9	Unmodified	_RLLEGVNQL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.306198	1040.59784	0.74414	0.00038793	-2.496	-0.0013012	-1.7519	-0.00091326	521.3050659522019	54.874	0.32841	54.668	54.502	54.831	-0.20613	-0.071581	-0.0034552	NaN	79.713	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149850			67082	1460	47197	47264							0.07916834225898128
RLLEKSGGLE	10	Unmodified	_RLLEKSGGLE_					0	0	0		ENST00000545228.2_1_17:73518583-73520490:+|nuORF;ENSG00000182173|ENST00000333213|TSEN54	ENST00000545228.2_1_17:73518583-73520490:+|nuORF	ENST00000545228.2_1_17:73518583-73520490:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3169555664062	2	551.316763	1100.61897	-0.71447	-0.0003939	-0.40677	-0.00022426	-1.1212	-0.00061816	551.3164013931482	43.878	0.59616	43.773	43.434	44.03	-0.10468					49	15	4	0	0	0	1.0122	1	4070	4070		44.377	2.9506	1	2372000			67083	9107	47198	47265	72527	72527					0.07268799534767822
RLLELLQEA	9	Unmodified	_RLLELLQEA_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000431567.5_1_2:95941253-95943708:+|nuORF;ENST00000463580.5_1_2:95940333-95943708:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.8220825195312	2	542.821681	1083.62881	0.50783	0.00027566	-0.58815	-0.00031926	-0.080327	-4.3603E-05	542.8213273637302	68.056	0.61039	67.801	67.538	68.148	-0.25516					40	14	3	0	0	0	0.038547	3	7836	7836;7846;7858		134.77	33.513	1	2846000			67084	6449	47199	47266	72528;72529;72530	72528					0.09033987540146882
RLLELLQEA	9	Unmodified	_RLLELLQEA_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000431567.5_1_2:95941253-95943708:+|nuORF;ENST00000463580.5_1_2:95940333-95943708:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.8224487304688	2	542.821681	1083.62881	0.057095	3.0993E-05	-0.10425	-5.6586E-05	-0.04715	-2.5594E-05	542.8215890100759	68.019	0.56427	67.786	67.555	68.119	-0.23376					39	13	3	0	0	0	0.14087	2	7860	7860;7878		101.46	10.859	1	2213900			67085	6449	47199	47266	72531;72532	72531					0.09033987540146882
RLLELLQEA	9	Unmodified	_RLLELLQEA_					0	0	0		nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;ENST00000431567.5_1_2:95941253-95943708:+|nuORF;ENST00000463580.5_1_2:95940333-95943708:+|nuORF	nc|ENSG00000155066|Q8N271-2|PROM2	nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.8216552734375	2	542.821681	1083.62881	-0.51242	-0.00027815	0.32008	0.00017375	-0.19234	-0.00010441	542.8217995158622	68.018	0.64754	67.779	67.422	68.07	-0.23814					44	15	4	0	0	0	0.031832	2	7835	7835;7848		140.11	38.86	1	2525100			67086	6449	47199	47266	72533;72534	72533					0.09033987540146882
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.3426513671875	2	564.342781	1126.67101	-0.33711	-0.00019025	-0.25302	-0.00014279	-0.59014	-0.00033304	564.3427056728598	46.324	1.3358	46.324	45.953	47.289	0					93	36	4	0	0	0	0.14181	2	4561	4561;4574		101.25	5.4468	1	11357000			67087	2263	47200	47267	72535;72536	72535					0.11273962948507688
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3427124023438	2	564.342781	1126.67101	-1.3171	-0.0007433	0.87573	0.00049421	-0.44138	-0.00024909	564.343325512874	46.378	1.1001	46.227	45.954	47.054	-0.15157					94	29	5	0	0	0	0.071379	1	4582	4582		120.87	30.499	1	11423000			67088	2263	47200	47267	72537	72537					0.11273962948507688
RLLEQKVEL	9	Unmodified	_RLLEQKVEL_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000557680.1_1_14:39648378-39651535:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.342041015625	2	564.342781	1126.67101	-0.66336	-0.00037436	0.024104	1.3603E-05	-0.63926	-0.00036076	564.3427576634141	46.239	1.0678	46.291	46.031	47.099	0.051395					86	29	5	0	0	0	0.041068	3	4499	4489;4499;4512		132.76	39.615	1	10787000			67089	2263	47200	47267	72538;72539;72540	72539					0.11273962948507688
RLLEQLQEI	9	Unmodified	_RLLEQLQEI_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.3311767578125	2	571.332413	1140.65027	0.78208	0.00044683	-1.4625	-0.00083558	-0.68043	-0.00038875	571.331351758224	63.858	0.97429	63.858	63.41	64.384	0					58	26	4	0	0	0	0.20652	1	7497	7497		88.177	9.9132	1	2462400			67090	1384	47201	47268	72541	72541					0.08557372568861865
RLLEQLQEI	9	Unmodified	_RLLEQLQEI_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.3318481445312	2	571.332413	1140.65027	-0.047938	-2.7389E-05	-0.59594	-0.00034048	-0.64388	-0.00036787	571.3318676924388	64.123	0.98333	63.871	63.444	64.428	-0.25141					61	26	4	0	0	0	0.087669	2	7501	7501;7512		114.89	16.247	1	2138600			67091	1384	47201	47268	72542;72543	72542					0.08557372568861865
RLLEQLQEI	9	Unmodified	_RLLEQLQEI_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.3314208984375	2	571.332413	1140.65027	0.99589	0.00056898	-1.8598	-0.0010626	-0.86396	-0.00049361	571.3311875592482	63.898	1.0116	63.944	63.475	64.486	0.045502					56	26	3	0	0	0	0.11727	1	7423	7423		106.68	13.085	1	2257000			67092	1384	47201	47268	72544	72544					0.08557372568861865
RLLEQLQEI	9	Unmodified	_RLLEQLQEI_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	571.332413	1140.65027	-0.11623	-6.6408E-05	-0.044992	-2.5706E-05	-0.16123	-9.2114E-05	571.3322350907516	64.158	0.52142	63.93	63.662	64.184	-0.22773	0.0036855	0.00098978	NaN	114.89	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272330			67093	1384	47201	47268							0.08557372568861865
RLLEQLQEI	9	Unmodified	_RLLEQLQEI_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	571.332413	1140.65027	0.11332	6.4745E-05	-0.73995	-0.00042275	-0.62662	-0.00035801	571.3319408703975	64.174	0.43773	63.981	63.717	64.154	-0.19243	0.055101	0.00019568	NaN	114.89	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273590			67094	1384	47201	47268							0.08557372568861865
RLLEQLQEI	9	Unmodified	_RLLEQLQEI_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	571.332413	1140.65027	-0.21333	-0.00012188	-0.7546	-0.00043113	-0.96793	-0.00055301	571.331995424049	64.229	0.51438	63.973	63.755	64.269	-0.25599	0.046371	0.00017894	NaN	114.89	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268470			67095	1384	47201	47268							0.08557372568861865
RLLEVPVML	9	Unmodified	_RLLEVPVML_					0	0	0		nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2	nc|ENSG00000063241|Q96AB3-2|ISOC2	nc|ENSG00000063241|Q96AB3-2|ISOC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.3259887695312	2	535.325545	1068.63654	0.29284	0.00015676	-0.56401	-0.00030193	-0.27117	-0.00014516	535.3249799105474	77.904	1.0603	77.662	77.405	78.465	-0.24232					50	24	4	0	0	0	0.67687	1	9294	9294		47.657	6.8792	1	1017800			67096	18058	47202	47269	72545	72545					0.10496423536051225
RLLGGCCS	8	Unmodified	_RLLGGCCS_					0	0	0			REV__ENST00000465530.1_1_10:14879835-14879964:-|nuORF	REV__ENST00000465530.1_1_10:14879835-14879964:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.7251892089844	2	404.693841	807.373128	0.45181	0.00018284	-4.1588	-0.001683	-3.707	-0.0015002	404.6939749880066	20.25	0.14685	20.25	20.127	20.274	0					4	2	2	0	0	0	0.027866	1	501	501		25.45	0	1	3829.3	+		67097	33007	47203	47270	72546	72546					-0.03826315120443269
RLLGLETNV	9	Unmodified	_RLLGLETNV_					0	0	0		ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.80078125	2	507.800749	1013.58694	-0.1748	-8.8762E-05	0.67329	0.0003419	0.4985	0.00025314	507.8010365610624	57.784	0.92695	57.784	57.266	58.193	0					58	24	4	0	0	0	0.29609	1	6530	6530		76.17	11.962	1	10932000			67098	3384	47204	47271	72547	72547					0.08069431851606623
RLLGLETNV	9	Unmodified	_RLLGLETNV_					0	0	0		ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.800048828125	2	507.800749	1013.58694	-0.71194	-0.00036152	1.2484	0.00063394	0.53646	0.00027241	507.8013318558652	58.126	0.56457	57.951	57.723	58.287	-0.1749					45	15	4	0	0	0	0.22379	2	6534	6521;6534		85.862	14.062	1	9350500			67099	3384	47204	47271	72548;72549	72549					0.08069431851606623
RLLGLETNV	9	Unmodified	_RLLGLETNV_					0	0	0		ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	ENSG00000114790|ENST00000465093|ARHGEF26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.80059814453125	2	507.800749	1013.58694	-0.65	-0.00033007	1.0188	0.00051735	0.36881	0.00018728	507.801248120029	57.762	0.87642	57.858	57.575	58.452	0.095306					62	23	4	0	0	0	0.22379	2	6435	6423;6435		85.862	23.754	1	8288400			67100	3384	47204	47271	72550;72551	72551					0.08069431851606623
RLLGYVATL	9	Unmodified	_RLLGYVATL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.3092346191406	2	503.30821	1004.60187	-1.0085	-0.00050759	1.0762	0.00054166	0.067696	3.4072E-05	503.30863071549925	65.034	1.2576	65.034	64.617	65.875	0					85	34	4	0	0	0	0.18915	3	7671	7671;7683;7704		90.777	16.802	1	5558600			67101	855	47205	47272	72552;72553;72554	72552					0.09974923719619255
RLLGYVATL	9	Unmodified	_RLLGYVATL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.30804443359375	2	503.30821	1004.60187	-0.99572	-0.00050116	1.0375	0.00052217	0.041754	2.1015E-05	503.3086225541142	65.353	1.3143	65.08	64.675	65.99	-0.27282					80	35	4	0	0	0	0.25032	2	7700	7700;7711		82.305	12.066	1	5350400			67102	855	47205	47272	72555;72556	72555					0.09974923719619255
RLLGYVATL	9	Unmodified	_RLLGYVATL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.30828857421875	2	503.30821	1004.60187	-0.27012	-0.00013595	0.49727	0.00025028	0.22716	0.00011433	503.3083143409052	65.064	1.0766	65.101	64.743	65.82	0.037384					72	29	4	0	0	0	0.12602	1	7608	7608		104.75	27.972	1	5379200			67103	855	47205	47272	72557	72557					0.09974923719619255
RLLHRLWRSRR	11	Unmodified	_RLLHRLWRSRR_					0	0	0		ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7677612304688	3	516.986798	1547.93856	-0.80815	-0.0004178	-2.5923	-0.0013402	-3.4005	-0.001758	516.9854849994907	52.085	1.5467	52.177	51.894	53.44	0.091938					98	40	4	0	0	0	0.02489	1	5503	5503		5.6988	5.3865	1	753760			67104	13378	47206	47273	72558	72558					0.1865132539028309
RLLIAQLTQEH	11	Unmodified	_RLLIAQLTQEH_					0	0	0		ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2426452636719	3	441.257738	1320.75138	2.3188	0.0010232	1.1209	0.0004946	3.4397	0.0015178	441.2583104894842	24.096	0.4018	23.915	23.626	24.028	-0.18089					12	8	2	0	0	0	0.024789	1	972	972		21.032	0	1	49938			67105	7176	47207	47274	72559	72559					0.10383824271548292
RLLKEHGQL	9	Unmodified	_RLLKEHGQL_					0	0	0			REV__ENST00000527076.1_1_16:1412572-1413089:+|nuORF	REV__ENST00000527076.1_1_16:1412572-1413089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3265380859375	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.16468	1	3691	3691		96.19	5.4138	1	33183000	+		67106	34466	47208	47275	72560	72560					0.09776229354133648
RLLKEHGQL	9	Unmodified	_RLLKEHGQL_					0	0	0			REV__ENST00000527076.1_1_16:1412572-1413089:+|nuORF	REV__ENST00000527076.1_1_16:1412572-1413089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3267822265625	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.091713	1	3685	3685		113.41	8.665	1	32648000	+		67107	34466	47208	47275	72561	72561					0.09776229354133648
RLLKEHGQL	9	Unmodified	_RLLKEHGQL_					0	0	0			REV__ENST00000527076.1_1_16:1412572-1413089:+|nuORF	REV__ENST00000527076.1_1_16:1412572-1413089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.326416015625	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.057894	1	3670	3670		125.81	17.727	1	35496000	+		67108	34466	47208	47275	72562	72562					0.09776229354133648
RLLKLRSFA	9	Unmodified	_RLLKLRSFA_					0	0	0			REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.2445068359375	2	552.356025	1102.6975	-0.86252	-0.00047642	-0.14022	-7.7452E-05	-1.0027	-0.00055387	552.3557841552828	44.056	0.65067	43.951	43.661	44.312	-0.10468					39	17	3	0	0	0	0.024381	1	4046	4046		45.952	12.436	1	1306400	+		67109	23238	47209	47276	72563	72563					0.15025696630527818
RLLKLRSFA	9	Unmodified	_RLLKLRSFA_					0	0	0			REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.356025	1102.6975	-0.99654	-0.00055045	0.081093	4.4792E-05	-0.91545	-0.00050565	552.3559418007337	44.226	0.80472	43.982	43.711	44.516	-0.2444	0.0040695	3.8425E-05	NaN	45.952	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1395300	+		67110	23238	47209	47276							0.15025696630527818
RLLKLRSFA	9	Unmodified	_RLLKLRSFA_					0	0	0			REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.356025	1102.6975	-1.115	-0.00061588	0.17201	9.5012E-05	-0.943	-0.00052087	552.3559637565054	44.22	0.60308	44	43.788	44.391	-0.21939	0.022681	0.00013886	NaN	45.952	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360000	+		67111	23238	47209	47276							0.15025696630527818
RLLKLRYLILG	11	Unmodified	_RLLKLRYLILG_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MSMS	OPSCC_40_ClassI_Rep-2	5	453.304931640625	3	453.306252	1356.89693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.01	1	112.87	112.37	113.37	-0.14389								0	0	0	1.7978	1	13666	13666		1.523	0	1				67112	10219	47210	47277	72564	72564					0.23275331858417303
RLLKMVQA	8	Unmodified	_RLLKMVQA_					0	0	0			REV__ENSG00000000938|ENST00000374005|FGR	REV__ENSG00000000938|ENST00000374005|FGR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7516784667969	2	479.796955	957.579357	0.039687	1.9042E-05	-0.46801	-0.00022455	-0.42832	-0.00020551	479.7961728656697	32.28	0.15571	32.28	32.224	32.379	0					5	3	2	0	0	0	0.027866	1	2235	2235		31.955	0	1	98600	+		67113	19753	47211	47278	72565	72565					0.09887001050344679
RLLKYFVELV	10	Unmodified	_RLLKYFVELV_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2648620605469	3	427.263941	1278.76999	0.50024	0.00021373	0.61886	0.00026442	1.1191	0.00047815	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.1333	1	5904	5904		28.081	4.5588	1	61030000	+		67114	25012	47212	47279	72566	72566					0.14175985913402656
RLLLETLPE	9	Unmodified	_RLLLETLPE_					0	0	0		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;TCIRG1|p.H564Y|1|0.08|ENSG00000110719|chr11:68049097-68049097|C/T|missense_variant	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.80126953125	2	542.324057	1082.63356	-0.90353	-0.00049	1.391	0.00075437	0.48747	0.00026437	542.3247800461584	45.435	1.0526	45.479	45.214	46.267	0.043877					71	30	4	0	0	0	0.024292	1	4322	4322		58.782	18.209	1	4793200			67115	3058	47213	47280	72567	72567					0.0955487168291711
RLLLMSLV	8	Unmodified	_RLLLMSLV_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7558898925781	2	472.801706	943.588859	0.47779	0.0002259	-0.768	-0.00036311	-0.2902	-0.00013721	472.8013504453924	42.754	0.32487	42.615	42.448	42.773	-0.13929					12	8	2	0	0	0	0.027866	1	3945	3945		50.025	0	1	92085	+		67116	21509	47214	47281	72568	72568					0.11480769335855712
RLLLNSVWW	9	Unmodified	_RLLLNSVWW_					0	0	0		ENST00000521922.5_1_8:103372407-103373420:-|nuORF	ENST00000521922.5_1_8:103372407-103373420:-|nuORF	ENST00000521922.5_1_8:103372407-103373420:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	593.8016357421875	2	593.840208	1185.66586	-0.81353	-0.00048311	-4.4411	-0.0026373	-5.2546	-0.0031204	593.8362753973447	35.883	0.23468	35.666	35.544	35.779	-0.21661					12	6	3	0	0	0	0.024292	1	2745	2745		49.442	2.9848	1	294950			67117	16019	47215	47282	72569	72569					0.08045703876541666
RLLLPTPTV	9	Unmodified	_RLLLPTPTV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.3240051269531	2	505.32386	1008.63317	0.44819	0.00022648	-0.54594	-0.00027588	-0.097748	-4.9394E-05	505.3234199950342	65.725	0.67319	65.725	65.392	66.065	0					46	17	3	0	0	0	0.67687	1	7815	7815		47.657	1.7054	1	1810500			67118	1231	47216	47283	72570	72570					0.1291949675368187
RLLLPTPTV	9	Unmodified	_RLLLPTPTV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.32403564453125	2	505.32386	1008.63317	-0.17097	-8.6397E-05	0.23043	0.00011644	0.059453	3.0043E-05	505.3237967565419	66.078	0.71774	65.805	65.464	66.181	-0.27282					50	18	4	0	0	0	0.23085	2	7839	7826;7839		84.916	17.534	1	2071800			67119	1231	47216	47283	72571;72572	72572					0.1291949675368187
RLLLPTPTV	9	Unmodified	_RLLLPTPTV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.32386	1008.63317	-0.01609	-8.1308E-06	0.068403	3.4566E-05	0.052313	2.6435E-05	505.3237280628576	65.801	0.71085	65.831	65.448	66.159	0.030106	0.044204	8.8376E-05	NaN	84.916	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2294000			67120	1231	47216	47283							0.1291949675368187
RLLLRLRPG	9	Unmodified	_RLLLRLRPG_					0	0	0			REV__ENSG00000169733|ENST00000310496|RFNG;REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	REV__ENSG00000169733|ENST00000310496|RFNG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3270874023438	2	547.369467	1092.72438	-0.17048	-9.3318E-05	-1.9458	-0.0010651	-2.1163	-0.0011584	547.3684835359663	41.191	0.21609	41.068	40.87	41.086	-0.12317					10	5	2	0	0	0	0.023355	1	3638	3638		76.847	8.3619	1	101360	+		67121	26396;35540	47217	47284	72573	72573					0.18172805241670176
RLLLRRHLGL	10	Unmodified	_RLLLRRHLGL_					0	0	0			REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	REV__ENST00000282146.4_1_14:90528455-90650665:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	623.9126586914062	2	623.914573	1245.81459	0.44848	0.00027981	1.3068	0.00081531	1.7552	0.0010951	623.9152006950998	107.69	0.1794	107.68	107.58	107.76	-0.0056458					14	8	2	0	0	0	1.0916	1	13766	13766		6.7355	0.42289	1	1781500	+		67122	29895	47218	47285	72574	72574					0.2015185457012194
RLLNLTVPD	9	Unmodified	_RLLNLTVPD_					0	0	0			REV__ENST00000495316.2_1_19:43701972-43708038:-|nuORF	REV__ENST00000495316.2_1_19:43701972-43708038:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8186645507812	2	520.808574	1039.60259	0.30804	0.00016043	-0.25859	-0.00013468	0.049449	2.5753E-05	520.8084720228428	71.737	1.3459	71.448	71.153	72.499	-0.28858					92	34	4	0	0	0	0.024292	1	8647	8647		58.782	14.665	1	6410700	+		67123	31870	47219	47286	72575	72575					0.08437718368668357
RLLNTAGG	8	Unmodified	_RLLNTAGG_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MSMS	OPSCC_40_ClassI_Rep-2	5	400.900634765625	2	401.232502	800.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.101	1	15.893	15.393	16.393	-0.20777								0	0	0	0.97952	1	50	50		21.702	1.2205	1				67124	2932	47220	47287	72576	72576					0.04224362411753191
RLLPGNATI	9	Unmodified	_RLLPGNATI_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.78997802734375	2	477.790184	953.565815	0.58724	0.00028058	-0.60417	-0.00028866	-0.016923	-8.0859E-06	477.7897736689777	53.369	1.1493	53.369	52.827	53.976	0					77	31	4	0	0	0	0.033448	4	5763	5753;5763;5775;5789		138.83	48.049	1	5930100			67125	18521	47221	47288	72577;72578;72579;72580	72578					0.08717466542748298
RLLPGNATI	9	Unmodified	_RLLPGNATI_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7898864746094	2	477.790184	953.565815	-0.4818	-0.0002302	0.40632	0.00019413	-0.075483	-3.6065E-05	477.79027538874556	53.438	0.9782	53.291	52.91	53.889	-0.14723					72	26	5	0	0	0	0.016871	4	5745	5745;5756;5769;5782		152.47	45.608	1	7223600			67126	18521	47221	47288	72581;72582;72583;72584	72581					0.08717466542748298
RLLPGNATI	9	Unmodified	_RLLPGNATI_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7906188964844	2	477.790184	953.565815	-0.35197	-0.00016817	0.23543	0.00011249	-0.11654	-5.5682E-05	477.7902100684945	53.222	0.99512	53.318	52.943	53.938	0.095669					75	27	4	0	0	0	0.033448	4	5669	5660;5669;5682;5696		138.83	48.049	1	7612000			67127	18521	47221	47288	72585;72586;72587;72588	72586					0.08717466542748298
RLLPPQRPG	9	Unmodified	_RLLPPQRPG_					0	0	0		nc|ENSG00000020219|A6NM43|CCT8L1P;ENSG00000198445|ENST00000359963|CCT8L2	nc|ENSG00000020219|A6NM43|CCT8L1P	nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.3165283203125	2	517.3169	1032.61925	-0.18688	-9.6677E-05	-0.33261	-0.00017207	-0.51949	-0.00026874	517.3165934052006	29.262	1.314	29.113	28.826	30.14	-0.14952					68	30	4	0	0	0	0.43973	1	1769	1769		63.306	1.1989	1	2295600			67128	10136	47222	47289	72589	72589					0.10424264045263953
RLLPRAGT	8	Unmodified	_RLLPRAGT_					0	0	0			REV__ENST00000317361.11_1_22:18256558-18256714:-|nuORF	REV__ENST00000317361.11_1_22:18256558-18256714:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7879638671875	2	442.277244	882.539935	-0.17951	-7.9395E-05	-0.45267	-0.0002002	-0.63218	-0.0002796	442.2767891681515	42.936	0.3648	42.936	42.859	43.224	0					11	9	2	0	0	0	0.027866	1	4015	4015		12.959	0	1	157550	+		67129	30295	47223	47290	72590	72590					0.09396617091124426
RLLPVCLL	8	Unmodified	_RLLPVCLL_					0	0	0			REV__ENST00000533646.1_1_11:64879487-64880551:+|nuORF	REV__ENST00000533646.1_1_11:64879487-64880551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7982177734375	2	463.796423	925.578294	0.079498	3.6871E-05	4.277	0.0019836	4.3565	0.0020205	463.79827981471084	41.584	0.89548	41.584	41.292	42.187	0					61	25	3	0	0	0	1.0572	1	3755	3755		28.254	5.2118	1	2631300	+		67130	34614	47224	47291	72591	72591					0.11252786681427551
RLLPVCLL	8	Unmodified	_RLLPVCLL_					0	0	0			REV__ENST00000533646.1_1_11:64879487-64880551:+|nuORF	REV__ENST00000533646.1_1_11:64879487-64880551:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	2	463.796423	925.578294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.83	1	41.853	41.353	42.353	0.023006								0	0	0	0.58686	1	3738	3738		49.211	8.0024	1		+		67131	34614	47224	47291	72592	72592					0.11252786681427551
RLLQCLSCDS	10	Unmodified	_RLLQCLSCDS_					0	0	0		ENST00000504797.1_1_12:54577600-54582666:-|nuORF;ENST00000504338.5_1_12:54577600-54582633:-|nuORF	ENST00000504797.1_1_12:54577600-54582666:-|nuORF	ENST00000504797.1_1_12:54577600-54582666:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.75048828125	2	569.273183	1136.53181	0.5818	0.0003312	2.1998	0.0012523	2.7816	0.0015835	569.2740393200427	50.855	0.56616	50.743	50.563	51.129	-0.11163					22	14	2	0	0	0	0.03519	1	5233	5233		34.173	8.5985	1	478850			67132	15711	47225	47292	72593	72593					-0.030990660028010097
RLLQDPVGV	9	Unmodified	_RLLQDPVGV_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;nc|ENSG00000159788|O14924-7|RGS12;nc|ENSG00000159788|O14924-6|RGS12;ENST00000508158.5_1_4:3386893-3430067:+|nuORF;nc|ENSG00000159788|O14924-2|RGS12;nc|ENSG00000159788|O14924-3|RGS12;ENST00000504194.5_1_4:3388118-3416046:+|nuORF;ENST00000506998.5_1_4:3371967-3419414:+|nuORF	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7956848144531	2	498.795466	995.57638	-0.56874	-0.00028368	0.251	0.0001252	-0.31774	-0.00015849	498.7956238977451	56.417	0.72533	56.252	55.95	56.675	-0.16431					45	19	4	0	0	0	0.64897	1	6269	6269		49.536	5.005	1	2109800			67133	6769	47226	47293	72594	72594					0.07841449197189831
RLLQLAKDH	9	Unmodified	_RLLQLAKDH_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3273315429688	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.11092	9	3775	3585;3608;3679;3703;3775;3875;3886;3953;4019		108.09	9.4581	1	33183000	+		67134	20462	47227	47294	72595;72596;72597;72598;72599;72600;72601;72602;72603	72599					0.0977622935411091
RLLQLAKDH	9	Unmodified	_RLLQLAKDH_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3271484375	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.057894	10	3673	3626;3661;3673;3757;3842;3854;3865;3872;3880;3946		125.81	26.439	1	32648000	+		67135	20462	47227	47294	72604;72605;72606;72607;72608;72609;72610;72611;72612;72613	72606					0.0977622935411091
RLLQLAKDH	9	Unmodified	_RLLQLAKDH_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3272705078125	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.11092	5	3803	3586;3730;3803;3852;3882		108.09	7.5979	1	35496000	+		67136	20462	47227	47294	72614;72615;72616;72617;72618	72616					0.0977622935411091
RLLQPSKMLVK	11	Unmodified	_RLLQPSKMLVK_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.2469482421875	3	438.275964	1311.80606	-0.18735	-8.2109E-05	3.7753	0.0016546	3.588	0.0015725	438.6117280613444	26.488	0.30156	26.569	26.456	26.758	0.081291					8	6	2	0	0	0	0.024779	1	1301	1301		16.53	0	1	13377	+		67137	27045	47228	47295	72619	72619					0.16263119818609084
RLLQQVSQI	9	Unmodified	_RLLQQVSQI_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8279418945312	2	542.827298	1083.64004	-0.7993	-0.00043388	0.63522	0.00034482	-0.16408	-8.9066E-05	542.8275585122196	52.535	0.8516	52.535	52.16	53.011	0					59	21	4	0	0	0	0.086035	2	5627	5627;5636		115.49	38.176	1	1591300			67138	2844	47229	47296	72620;72621	72620					0.10156809634281672
RLLQQVSQI	9	Unmodified	_RLLQQVSQI_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8284301757812	2	542.827298	1083.64004	-0.26035	-0.00014132	0.1049	5.6943E-05	-0.15545	-8.438E-05	542.8273130146466	52.611	0.73888	52.464	52.209	52.948	-0.14723					45	18	3	0	0	0	0.077175	2	5632	5618;5632		118.74	26.07	1	1600700			67139	2844	47229	47296	72622;72623	72623					0.10156809634281672
RLLQQVSQI	9	Unmodified	_RLLQQVSQI_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.8269653320312	2	542.827298	1083.64004	-0.70947	-0.00038512	0.049181	2.6697E-05	-0.66029	-0.00035842	542.8272692256998	52.454	0.69959	52.546	52.24	52.939	0.091938					49	17	4	0	0	0	0.03666	2	5549	5537;5549		136.27	54.439	1	3113400			67140	2844	47229	47296	72624;72625	72625					0.10156809634281672
RLLQRTSL	8	Unmodified	_RLLQRTSL_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.78497314453125	2	493.808908	985.603263	0.39452	0.00019482	-0.49736	-0.0002456	-0.10284	-5.0783E-05	493.8085693925263	41.035	0.74048	41.035	40.764	41.505	0					44	20	3	0	0	0	0.027866	1	3718	3718		73.975	13.003	1	978770	+		67141	21324	47230	47297	72626	72626					0.10988557808377664
RLLQRTSL	8	Unmodified	_RLLQRTSL_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7852783203125	2	493.808908	985.603263	-0.053754	-2.6544E-05	0.11069	5.4658E-05	0.056933	2.8114E-05	493.8087761072765	41.243	0.69961	41.266	40.97	41.67	0.023006					44	19	3	0	0	0	0.027866	1	3686	3686		85.359	19.556	1	881940	+		67142	21324	47230	47297	72627	72627					0.10988557808377664
RLLQRTSL	8	Unmodified	_RLLQRTSL_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.808908	985.603263	0.34959	0.00017263	-0.16956	-8.3731E-05	0.18003	8.89E-05	493.8086956266522	41.169	0.73968	41.046	40.797	41.537	-0.12317	-0.069677	3.4344E-05	NaN	73.975	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	932950	+		67143	21324	47230	47297							0.10988557808377664
RLLQSLLL	8	Unmodified	_RLLQSLLL_					0	0	0			REV__ENSG00000120211|ENST00000239316|INSL4	REV__ENSG00000120211|ENST00000239316|INSL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.300048828125	2	478.318577	954.622602	-0.72629	-0.0003474	-0.93975	-0.0004495	-1.666	-0.0007969	478.31837797688655	37.839	0.10152	37.871	37.787	37.889	0.032269					4	2	2	0	0	0	0.027866	1	3061	3061		94.006	0	1	21744	+		67144	22517	47231	47298	72628	72628					0.14347514099279124
RLLRPAAR	8	Unmodified	_RLLRPAAR_					0	0	0			REV__ENST00000303004.4_1_20:48807959-48808286:+|nuORF	REV__ENST00000303004.4_1_20:48807959-48808286:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.3063049316406	2	476.811785	951.609017	0.069833	3.3297E-05	3.4541	0.0016469	3.5239	0.0016802	476.812982626058	64.313	0.83146	64.086	63.549	64.38	-0.22773					28	20	2	0	0	0	0.027866	1	7307	7307		26.796	0	1	485480	+		67145	30085	47232	47299	72629	72629					0.13127701110693124
RLLRQGAGPG	10	Unmodified	_RLLRQGAGPG_					0	0	0			REV__ENST00000296255.7_1_3:128369542-128369596:-|nuORF	REV__ENST00000296255.7_1_3:128369542-128369596:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.253662109375	2	512.804157	1023.59376	-1.0019	-0.00051375	3.6493	0.0018714	2.6474	0.0013576	512.8058724795176	80.308	0.75316	80.329	79.98	80.733	0.021439					44	17	4	0	0	0	0.03519	1	9947	9947		6.7355	0	1	902080	+		67146	29991	47233	47300	72630	72630					0.08290789522857267
RLLRSIKP	8	Unmodified	_RLLRSIKP_					0	0	0		nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	nc|ENSG00000231004|P0C854|CECR9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.8297424316406	2	491.829643	981.644734	-1.1272	-0.00055441	0.93504	0.00045988	-0.1922	-9.453E-05	491.8300297099961	26.132	1.2402	25.896	25.467	26.707	-0.23603					82	32	4	0	0	0	0.845	1	1322	1322		55.504	3.205	1	5995500			67147	18746	47234	47301	72631	72631					0.1531773856770542
RLLRTAAE	8	Unmodified	_RLLRTAAE_					0	0	0			REV__nc|ENSG00000163882|P52434-4|POLR2H	REV__nc|ENSG00000163882|P52434-4|POLR2H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2615051269531	2	465.279983	928.545414	-0.39829	-0.00018532	0.12332	5.7377E-05	-0.27497	-0.00012794	465.27990409420477	22.267	0.48206	22.341	22.125	22.607	0.073954					16	9	2	0	0	0	0.027866	1	744	744		47.657	6.8792	1	147690	+		67148	36857	47235	47302	72632	72632					0.07828295882927705
RLLSFVVLA	9	Unmodified	_RLLSFVVLA_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.326416015625	2	509.326402	1016.63825	0.64522	0.00032863	-0.9084	-0.00046267	-0.26318	-0.00013404	509.3258623544435	77.782	0.71899	77.54	77.233	77.952	-0.24232					56	16	4	0	0	0	0.39228	2	9281	9268;9281		66.429	15.094	1	6213000			67149	12886	47236	47303	72633;72634	72634					0.1305980061632681
RLLSFVVLA	9	Unmodified	_RLLSFVVLA_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.326171875	2	509.326402	1016.63825	-0.31861	-0.00016228	-0.060671	-3.0901E-05	-0.37928	-0.00019318	509.3262910924943	77.685	0.72538	77.523	77.225	77.951	-0.16196					54	16	4	0	0	0	0.31037	2	9234	9234;9246		74.255	13.283	1	4794900			67150	12886	47236	47303	72635;72636	72635					0.1305980061632681
RLLVHATKR	9	Unmodified	_RLLVHATKR_					0	0	0		ENST00000302503.7_1_11:47640451-47647231:-|nuORF	ENST00000302503.7_1_11:47640451-47647231:-|nuORF	ENST00000302503.7_1_11:47640451-47647231:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3273315429688	2	547.351274	1092.688	-0.73167	-0.00040048	3.0342	0.0016608	2.3026	0.0012603	547.3547557724286	41.806	0.18386	41.829	41.706	41.89	0.023006					7	4	2	0	0	0	0.023417	1	3730	3730		79.451	0	1	79167			67151	11957	47237	47304	72637	72637					0.14535928344980675
RLLVKGQGGP	10	Unmodified	_RLLVKGQGGP_					0	0	0			REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF	REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7742309570312	2	512.816733	1023.61891	-0.11975	-6.1408E-05	0.11025	5.654E-05	-0.0094944	-4.8689E-06	512.8164470179149	45.624	0.70366	45.528	45.257	45.961	-0.096653					34	19	2	0	0	0	0.03519	1	4334	4334		84.916	26.134	1	558940	+		67152	34704	47238	47305	72638	72638					0.10804844325434715
RLLVKVDNH	9	Unmodified	_RLLVKVDNH_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.327392578125	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.086035	8	3812	3620;3727;3751;3812;3824;3861;3899;3940		115.49	5.4453	1	33183000	+		67153	23347	47239	47306	72639;72640;72641;72642;72643;72644;72645;72646	72642					0.09776229354133648
RLLVKVDNH	9	Unmodified	_RLLVKVDNH_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3270874023438	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.12914	6	3817	3638;3733;3745;3769;3817;3920		104.06	2.8042	1	32648000	+		67154	23347	47239	47306	72647;72648;72649;72650;72651;72652	72651					0.09776229354133648
RLLVKVDNH	9	Unmodified	_RLLVKVDNH_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3267211914062	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.10174	2	3694	3694;3872		110.12	2.4389	1	35496000	+		67155	23347	47239	47306	72653;72654	72653					0.09776229354133648
RLLVVIGMLS	10	Unmodified	_RLLVVIGMLS_					0	0	0			REV__ENST00000556909.1_1_14:77924096-77924195:-|nuORF	REV__ENST00000556909.1_1_14:77924096-77924195:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2716064453125	2	550.846645	1099.67874	-1.1895	-0.00065526	-1.2394	-0.00068272	-2.4289	-0.001338	551.3478180293139	55.71	0.57547	55.808	55.561	56.137	0.098015					22	15	2	0	0	0	0.03519	1	6098	6098		35.618	20.753	1	141390	+		67156	35052	47240	47307	72655	72655					0.1328839894445082
RLLVVPRIK	9	Unmodified	_RLLVVPRIK_					0	0	0			REV__ENST00000380752.9_1_13:30087987-30088110:-|nuORF	REV__ENST00000380752.9_1_13:30087987-30088110:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3264770507812	2	547.382043	1092.74953	-0.33436	-0.00018302	-0.7563	-0.00041399	-1.0907	-0.00059701	547.3819375898973	41.275	0.45432	41.275	41.051	41.505	0					17	12	2	0	0	0	0.024294	1	3727	3727		65.803	12.452	1	168920	+		67157	31496	47241	47308	72656	72656					0.2068686004427036
RLLWKMWFRFF	11	Unmodified	_RLLWKMWFRFF_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.8158569335938	3	543.967353	1628.88023	2.9342	0.0015961	-0.5523	-0.00030043	2.3819	0.0012957	543.9671910340029	17.474	0.44581	17.474	17.349	17.795	0					14	8	2	0	0	0	0.024896	1	198	198		6.3209	3.2949	1	22793	+		67158	27261	47242	47309	72657	72657					0.0909450770075182
RLLWKMWFRFF	11	Unmodified	_RLLWKMWFRFF_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	543.967353	1628.88023	0.82403	0.00044824	1.7342	0.00094335	2.5582	0.0013916	543.9684431972576	17.815	0.20023	17.661	17.507	17.708	-0.15403	0.093607	0.0025163	NaN	6.3209	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10386	+		67159	27261	47242	47309							0.0909450770075182
RLLWVAPLLRL	11	Unmodified	_RLLWVAPLLRL_					0	0	0			REV__ENST00000470752.5_1_2:175490576-175494437:-|nuORF	REV__ENST00000470752.5_1_2:175490576-175494437:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2686462402344	3	450.630847	1348.87071	-1.437	-0.00064756	-1.9223	-0.00086624	-3.3593	-0.0015138	450.62961174266206	38.154	0.20691	38.181	38.057	38.264	0.027275					8	5	2	0	0	0	0.024792	1	3100	3100		30.569	10.942	1	223440	+		67160	33160	47243	47310	72658	72658					0.21023062686913363
RLMDNLPQL	9	Unmodified	_RLMDNLPQL_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2992553710938	2	550.300059	1098.58556	-0.47614	-0.00026202	0.22244	0.00012241	-0.2537	-0.00013961	550.3000281645001	66.662	0.81094	66.662	66.434	67.245	0					42	20	3	0	0	0	0.15366	1	7931	7931		98.629	0	1	1815400			67161	5762	47244	47311	72659	72659					0.04021474491196386
RLMDNLPQL	9	Unmodified	_RLMDNLPQL_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3004760742188	2	550.300059	1098.58556	-0.86049	-0.00047353	0.36483	0.00020077	-0.49566	-0.00027276	550.3002804003539	67.018	0.79379	66.737	66.481	67.274	-0.28148					52	20	5	0	0	0	0.2101	1	7945	7945		87.696	5.4559	1	2372200			67162	5762	47244	47311	72660	72660					0.04021474491196386
RLMDNLPQL	9	Unmodified	_RLMDNLPQL_					0	0	0		nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD;ENSG00000144730|ENST00000296318|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2996215820312	2	550.300059	1098.58556	-0.69255	-0.00038111	0.71525	0.0003936	0.022701	1.2492E-05	550.3002168971618	66.753	0.90437	66.779	66.487	67.391	0.025871					42	21	3	0	0	0	0.11727	2	7868	7857;7868		106.68	1.9365	1	1572600			67163	5762	47244	47311	72661;72662	72662					0.04021474491196386
RLMGGHPG	8	Unmodified	_RLMGGHPG_					0	0	0		ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.7132568359375	2	412.713422	823.412291	0.36789	0.00015183	-1.0038	-0.00041429	-0.63593	-0.00026246	412.7129157271808	73.382	1.2229	73.111	72.354	73.577	-0.27126					74	30	4	0	0	0	1.0574	1	8938	8938		21.702	1.2205	1	4914300			67164	9706	47245	47312	72663	72663					-0.006478467745637317
RLMLAPPRA	9	Unmodified	_RLMLAPPRA_					0	0	0			REV__ENSG00000176769|ENST00000368642|TCERG1L	REV__ENSG00000176769|ENST00000368642|TCERG1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7843017578125	2	512.807854	1023.60115	-0.39607	-0.00020311	-1.3041	-0.00066875	-1.7002	-0.00087185	512.8068666089916	73.209	0.29045	72.944	72.767	73.058	-0.26479					9	6	2	0	0	0	0.024541	1	8622	8622		24.203	0	1	56902	+		67165	27044	47246	47313	72664	72664					0.0902980579890027
RLMMEHVL	8	Unmodified	_RLMMEHVL_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7709350585938	2	514.772622	1027.53069	-0.14548	-7.4888E-05	-1.1421	-0.00058792	-1.2876	-0.00066281	514.7720964758048	43.328	1.2248	43.358	43.01	44.235	0.030827					70	33	4	0	0	0	0.81662	1	3984	3984		57.811	0	1	7353200			67166	5919	47247	47314	72665	72665					0.018027644189260172
RLMNETTAV	9	Oxidation (M)	_RLM(Oxidation (M))NETTAV_		RLM(1)NETTAV		RLM(70)NETTAV	0	0	1		ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.765869140625	2	525.766049	1049.51754	-1.605	-0.00084386	1.1016	0.00057919	-0.50341	-0.00026468	525.7665353830832	31.066	1.3262	31.066	30.343	31.669	0					75	31	4	0	0	0	0.34489	1	2052	2052		69.628	14.851	1	3271600			67167	8059;7203	47248	47315	72666	72666		301			-0.005233951594846076
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7688598632812	2	517.768591	1033.52263	-0.31164	-0.00016136	1.377	0.00071295	1.0653	0.00055159	517.7695828487074	39.273	0.90896	39.273	38.97	39.879	0					69	25	6	0	0	0	0.28753	1	3363	3363		77.318	23.966	1	7075600			67168	8059;7203	47248	47316	72667	72667					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.7686157226562	2	517.768591	1033.52263	-0.91685	-0.00047472	1.0731	0.00055563	0.15628	8.0919E-05	517.7691209356443	39.316	0.88519	39.217	38.843	39.728	-0.098755					63	24	4	0	0	0	0.15366	2	3351	3351;3364		98.629	13.469	1	6367600			67169	8059;7203	47248	47316	72668;72669	72668					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7686157226562	2	517.768591	1033.52263	-1.2762	-0.0006608	1.5115	0.00078263	0.2353	0.00012183	517.7693212294242	39.481	0.84296	39.505	39.135	39.978	0.023727					63	23	4	0	0	0	0.17822	2	3330	3330;3341		93.195	18.152	1	5975600			67170	8059;7203	47248	47316	72670;72671	72670					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7686767578125	2	517.768591	1033.52263	-0.70324	-0.00036412	0.64995	0.00033652	-0.053294	-2.7594E-05	517.7687652910947	39.349	0.71655	39.185	38.898	39.614	-0.16458					46	18	4	0	0	0	0.5973	1	3343	3343		52.937	5.0211	1	2857000			67171	8059;7203	47248	47316	72672	72672					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7685546875	2	517.768591	1033.52263	-0.31703	-0.00016415	0.24354	0.0001261	-0.073488	-3.805E-05	517.7685852186431	39.507	0.77572	39.284	38.999	39.775	-0.22311					48	19	4	0	0	0	0.26966	1	3354	3354		79.713	10.926	1	2859800			67172	8059;7203	47248	47316	72673	72673					0.007209087031469608
RLMNETTAV	9	Unmodified	_RLMNETTAV_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000164070|ENST00000296464|HSPA4L;ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7685546875	2	517.768591	1033.52263	0.053867	2.789E-05	-0.13962	-7.229E-05	-0.085751	-4.4399E-05	517.7683073936694	39.499	0.75555	39.274	38.946	39.701	-0.2257					51	19	4	0	0	0	0.56934	2	3335	3335;3347		54.776	1.4249	1	2796800			67173	8059;7203	47248	47316	72674;72675	72674					0.007209087031469608
RLNASAQVAP	10	Unmodified	_RLNASAQVAP_					0	0	0		nc|ENSG00000131059|Q9BQP9-2|BPIFA3;ENSG00000131059|ENST00000375454|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7879638671875	2	513.788173	1025.56179	-0.8679	-0.00044592	0.2983	0.00015326	-0.5696	-0.00029266	513.7882504811131	27.8	0.9779	27.8	27.471	28.449	0					60	24	3	0	0	0	0.80817	1	1568	1568		60.118	8.9256	1	2904500			67174	4490	47249	47317	72676	72676					0.05003377049047231
RLNASAQVAP	10	Unmodified	_RLNASAQVAP_					0	0	0		nc|ENSG00000131059|Q9BQP9-2|BPIFA3;ENSG00000131059|ENST00000375454|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7885131835938	2	513.788173	1025.56179	-1.0884	-0.00055923	0.57614	0.00029601	-0.5123	-0.00026321	513.7883511015993	27.545	0.89135	27.626	27.357	28.249	0.081293					56	22	3	0	0	0	1.0236	1	1496	1496		42.864	9.3487	1	3177700			67175	4490	47249	47317	72677	72677					0.05003377049047231
RLNDTIQLL	9	Unmodified	_RLNDTIQLL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3196411132812	2	543.319306	1084.62406	-0.49478	-0.00026882	-0.028221	-1.5333E-05	-0.523	-0.00028415	543.31926182866	64.426	1.2997	64.426	64.026	65.326	0					62	35	2	0	0	0	0.067814	3	7589	7568;7577;7589		122.18	11.551	1	11644000			67176	362	47250	47318	72678;72679;72680	72680					0.08513103397399391
RLNDTIQLL	9	Unmodified	_RLNDTIQLL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.3201293945312	2	543.319306	1084.62406	-1.5924	-0.00086516	1.222	0.00066396	-0.37031	-0.00020119	543.3198790554983	64.731	1.2899	64.469	64.083	65.372	-0.2626					71	34	3	0	0	0	0.096521	1	7589	7589		111.65	13.019	1	10106000			67177	362	47250	47318	72681	72681					0.08513103397399391
RLNEKQTCC	9	Unmodified	_RLNEKQTCC_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.327392578125	2	547.757701	1093.50085	-0.81767	-0.00044789	1.6687	0.00091403	0.85101	0.00046615	548.2596124391594	41.753	0.63807	41.621	41.251	41.889	-0.13219					27	17	2	0	0	0	0.023181	1	3757	3757		94.006	9.0909	1	172890	+		67178	21050	47251	47319	72682	72682					-0.04216219317049763
RLNEKQTCC	9	Unmodified	_RLNEKQTCC_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3268432617188	2	547.757701	1093.50085	-0.6486	-0.00035527	3.4812	0.0019069	2.8326	0.0015516	547.7596842945245	42.485	0.52058	42.353	42.082	42.602	-0.13219					19	14	2	0	0	0	0.023181	1	3932	3932		94.006	20.032	1	89373	+		67179	21050	47251	47319	72683	72683					-0.04216219317049763
RLNGKLADA	9	Unmodified	_RLNGKLADA_					0	0	0			REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.77667236328125	2	479.277441	956.540328	0.41467	0.00019874	-1.4395	-0.00068993	-1.0249	-0.00049119	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	0.75397	1	10424	10424		42.396	0.96952	1	1015600	+		67180	37195	47252	47320	72684	72684					0.06031992020314192
RLNHSIIQI	9	Unmodified	_RLNHSIIQI_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.326904296875	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.14024	1	3646	3646		101.6	2.2258	1	35496000	+		67181	21973	47253	47321	72685	72685					0.09776229354133648
RLNIPVSQV	9	Unmodified	_RLNIPVSQV_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.3086547851562	2	513.308741	1024.60293	-0.10532	-5.4059E-05	-0.3009	-0.00015446	-0.40622	-0.00020851	513.3085301451987	54.584	1.0748	54.434	54.191	55.266	-0.15036					91	30	5	0	0	0	0.16638	1	5955	5955		95.815	7.1723	1	8060200			67182	7073;2674	47254	47322	72686	72686					0.09161138088529697
RLNIPVSQV	9	Unmodified	_RLNIPVSQV_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3082275390625	2	513.308741	1024.60293	0.33058	0.00016969	-0.9403	-0.00048266	-0.60972	-0.00031298	513.3082328360034	54.345	1.107	54.443	54.15	55.257	0.098015					75	31	3	0	0	0	0.22902	1	5857	5857		85.161	5.4482	1	9063000			67183	7073;2674	47254	47322	72687	72687					0.09161138088529697
RLNKIVIW	8	Unmodified	_RLNKIVIW_					0	0	0			REV__chr22:45396486-45399095|185|13.94|0.48|4.86|-|1|SMC1B,SMC1B|1	REV__chr22:45396486-45399095|185|13.94|0.48|4.86|-|1|SMC1B,SMC1B|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7748413085938	2	521.332019	1040.64948	-0.94593	-0.00049315	0.75663	0.00039445	-0.1893	-9.869E-05	521.3322461333954	52.269	0.53577	52.15	51.904	52.44	-0.11875					30	13	3	0	0	0	0.027866	1	5426	5426		44.531	0	1	503730	+		67184	19430	47255	47323	72688	72688					0.13078622710440868
RLNKIVIW	8	Unmodified	_RLNKIVIW_					0	0	0			REV__chr22:45396486-45399095|185|13.94|0.48|4.86|-|1|SMC1B,SMC1B|1	REV__chr22:45396486-45399095|185|13.94|0.48|4.86|-|1|SMC1B,SMC1B|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7694702148438	2	521.332019	1040.64948	-0.37113	-0.00019348	0.15577	8.1209E-05	-0.21536	-0.00011227	521.3319568642409	52.531	0.53829	52.262	52.054	52.593	-0.26903					32	13	3	0	0	0	0.027866	1	5465	5465		52.299	16.681	1	537460	+		67185	19430	47255	47323	72689	72689					0.13078622710440868
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3297729492188	2	536.329673	1070.64479	-1.402	-0.00075195	0.081756	4.3848E-05	-1.3203	-0.00070811	536.3296847484265	43.818	0.87739	43.818	43.404	44.281	0					73	24	4	0	0	0	0.12602	3	4125	4115;4125;4137		104.75	15.811	1	6677300			67186	8755	47256	47324	72690;72691;72692	72691					0.11229693777045213
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3287963867188	2	536.329673	1070.64479	-1.4554	-0.00078055	-0.0059171	-3.1735E-06	-1.4613	-0.00078372	536.3295362586283	43.986	1.4099	43.841	43.425	44.834	-0.14471					97	40	4	0	0	0	0.11092	2	4142	4132;4142		108.09	31.313	1	7135100			67187	8755	47256	47324	72693;72694	72694					0.11229693777045213
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3292236328125	2	536.329673	1070.64479	-0.8281	-0.00044413	-0.43447	-0.00023302	-1.2626	-0.00067715	536.3293138617228	43.914	1.1208	43.951	43.492	44.612	0.0369					76	31	4	0	0	0	0.15029	2	4076	4076;4084		99.375	25.12	1	6452300			67188	8755	47256	47324	72695;72696	72695					0.11229693777045213
RLNKVLQV	8	Unmodified	_RLNKVLQV_					0	0	0			REV__ENSG00000174529|ENST00000367167|TMEM81	REV__ENSG00000174529|ENST00000367167|TMEM81	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.3126220703125	2	485.313826	968.613099	-1.1967	-0.00058078	0.65369	0.00031725	-0.54303	-0.00026354	485.3139540040231	44.1	1.7136	44.1	43.8	45.514	0					116	49	5	0	0	0	0.61897	2	4215	4166;4215		74.517	3.2209	1	43296000	+		67189	26874	47257	47325	72697;72698	72698					0.12753745813756723
RLNKVLQV	8	Unmodified	_RLNKVLQV_					0	0	0			REV__ENSG00000174529|ENST00000367167|TMEM81	REV__ENSG00000174529|ENST00000367167|TMEM81	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.31256103515625	2	485.313826	968.613099	-1.2198	-0.00059197	0.8735	0.00042392	-0.34625	-0.00016804	485.3140683169259	44.29	1.4688	44.146	43.848	45.316	-0.14471					114	42	5	0	0	0	0.75307	1	4227	4227		62.978	2.0065	1	40669000	+		67190	26874	47257	47325	72699	72699					0.12753745813756723
RLNKVLQV	8	Unmodified	_RLNKVLQV_					0	0	0			REV__ENSG00000174529|ENST00000367167|TMEM81	REV__ENSG00000174529|ENST00000367167|TMEM81	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.3132629394531	2	485.313826	968.613099	-0.73355	-0.000356	0.35686	0.00017319	-0.37669	-0.00018281	485.3138184753033	44.155	1.6502	44.192	43.923	45.573	0.036903					127	47	5	0	0	0	0.52467	1	4151	4151		83.287	9.3125	1	37463000	+		67191	26874	47257	47325	72700	72700					0.12753745813756723
RLNNKSAKV	9	Unmodified	_RLNNKSAKV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3120727539062	2	515.311815	1028.60908	0.30122	0.00015522	-0.41688	-0.00021483	-0.11567	-5.9604E-05	515.3115093250659	17.868	0.73873	17.726	17.503	18.241	-0.14278					32	14	5	0	0	0	0.31037	1	211	211		74.255	10.048	1	722620			67192	3459	47258	47326	72701	72701					0.09591656320048969
RLNPEMLQI	9	Unmodified	_RLNPEMLQI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.3080444335938	2	557.307884	1112.60121	0.60147	0.0003352	-2.4897	-0.0013875	-1.8883	-0.0010523	557.3061442787379	63.491	1.1881	63.491	62.98	64.168	0					71	32	3	0	0	0	0.51687	1	7437	7437		58.23	17.452	1	2014800			67193	9860	47259	47327	72702	72702					0.049417610082628016
RLNPEMLQI	9	Unmodified	_RLNPEMLQI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.307884	1112.60121	-0.18512	-0.00010317	-1.584	-0.00088276	-1.7691	-0.00098593	557.306711781122	63.715	1.1178	63.463	62.976	64.094	-0.25141	-0.045641	0.00096109	NaN	58.23	74	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1942200			67194	9860	47259	47327							0.049417610082628016
RLNPEMLQI	9	Unmodified	_RLNPEMLQI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.307884	1112.60121	1.7358	0.0009674	-3.56	-0.001984	-1.8242	-0.0010166	557.3055907161944	63.519	1.2303	63.573	62.931	64.161	0.054104	0.063851	-0.0012414	NaN	58.23	68	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2198300			67195	9860	47259	47327							0.049417610082628016
RLNQSKKLP	9	Unmodified	_RLNQSKKLP_					0	0	0		SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	SPECC1L|p.L558Sfs*16|1|0.25|ENSG00000100014|chr22:24322646-24322647|-/CAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.80126953125	2	542.33529	1082.65603	-0.90932	-0.00049316	-0.23237	-0.00012602	-1.1417	-0.00061918	542.3350147036383	45.159	0.48676	45.203	44.824	45.311	0.043877					30	13	3	0	0	0	0.024257	1	4322	4322		58.23	0	1	1242700			67196	2116	47260	47328	72703	72703					0.1180051587118669
RLNRIFVLLVL	11	Unmodified	_RLNRIFVLLVL_					0	0	0			REV__ENSG00000123643|ENST00000243389|SLC36A1	REV__ENSG00000123643|ENST00000243389|SLC36A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24761962890625	3	452.634368	1354.88128	-0.15735	-7.1221E-05	2.6125	0.0011825	2.4552	0.0011113	452.97013669698083	33.462	0.098747	33.462	33.388	33.487	0					4	2	2	0	0	0	0.024865	1	2411	2411		6.6596	0.65857	1	42352	+		67197	22715	47261	47329	72704	72704					0.21803045341357574
RLNWQIKD	8	Unmodified	_RLNWQIKD_					0	0	0		ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3131103515625	2	536.79854	1071.58253	-1.2081	-0.00064852	-0.85223	-0.00045747	-2.0604	-0.001106	536.7982849213751	86.346	0.60764	86.369	86.029	86.637	0.023674					22	13	2	0	0	0	0.027866	1	10784	10784		40.573	9.0428	1	199080			67198	10916	47262	47330	72705	72705					0.04959967428703749
RLPAAGVGDMV	11	Oxidation (M)	_RLPAAGVGDM(Oxidation (M))V_		RLPAAGVGDM(1)V		RLPAAGVGDM(88)V	0	0	1		ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.2890014648438	2	551.289691	1100.56483	-1.082	-0.00059649	0.38555	0.00021255	-0.69645	-0.00038394	551.2898096684308	45.204	0.9944	45.056	44.455	45.449	-0.1488					37	28	3	0	0	0	0.31805	1	4360	4360		88.177	14.202	1	2019300			67199	4128	47263	47331	72706	72706		163			0.018568841115438772
RLPAEGLKGF	10	Unmodified	_RLPAEGLKGF_					0	0	0		ENST00000481241.1_1_3:180491477-180491675:-|nuORF;ENST00000491086.5_1_3:149531035-149619859:+|nuORF;ENSG00000082996|ENST00000392894|RNF13	ENST00000481241.1_1_3:180491477-180491675:-|nuORF	ENST00000481241.1_1_3:180491477-180491675:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3145751953125	2	544.316566	1086.61858	-0.62675	-0.00034115	-3.3257	-0.0018102	-3.9524	-0.0021514	544.3146867306606	42.33	0.84772	42.099	41.837	42.684	-0.23186					55	22	4	0	0	0	1.0616	1	3797	3797		37.812	3.639	1	2930500			67200	1743	47264	47332	72707	72707					0.07873424605554646
RLPAEGLKGF	10	Unmodified	_RLPAEGLKGF_					0	0	0		ENST00000481241.1_1_3:180491477-180491675:-|nuORF;ENST00000491086.5_1_3:149531035-149619859:+|nuORF;ENSG00000082996|ENST00000392894|RNF13	ENST00000481241.1_1_3:180491477-180491675:-|nuORF	ENST00000481241.1_1_3:180491477-180491675:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3150634765625	2	544.316566	1086.61858	-0.85438	-0.00046505	-3.4013	-0.0018514	-4.2556	-0.0023164	544.3146427028958	42.385	0.87344	42.155	41.797	42.67	-0.23029					65	23	4	0	0	0	0.94316	1	3791	3791		51.193	1.7511	1	2825900			67201	1743	47264	47332	72708	72708					0.07873424605554646
RLPAKALGRI	10	Unmodified	_RLPAKALGRI_					0	0	0			REV__nc|ENSG00000118094|O43280-2|TREH	REV__nc|ENSG00000118094|O43280-2|TREH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3270263671875	2	547.861475	1093.7084	-0.60421	-0.00033102	0.92695	0.00050784	0.32273	0.00017681	547.8619845369144	41.501	0.1357	41.378	41.328	41.464	-0.12317					5	3	2	0	0	0	0.03519	1	3733	3733		71.296	0	1	53082	+		67202	22386	47265	47333	72709	72709					0.16529099004787895
RLPALGRA	8	Unmodified	_RLPALGRA_					0	0	0		ENSG00000164051|ENST00000395694|CCDC51;ENST00000442740.1_2_3:48475374-48481489:-|nuORF	ENSG00000164051|ENST00000395694|CCDC51	ENSG00000164051|ENST00000395694|CCDC51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.302734375	2	427.271961	852.52937	1.2681	0.00054182	-2.6986	-0.001153	-1.4305	-0.00061122	427.2705977060818	68.015	0.53621	67.76	67.367	67.903	-0.25516					18	12	2	0	0	0	0.027866	1	7826	7826		25.45	4.9683	1	176470			67203	7198	47266	47334	72710	72710					0.09720634436700948
RLPARTIFG	9	Unmodified	_RLPARTIFG_					0	0	0			REV__ENST00000458345.5_2_10:104858695-104859708:-|nuORF	REV__ENST00000458345.5_2_10:104858695-104859708:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2786865234375	2	515.811451	1029.60835	-0.63848	-0.00032934	0.47005	0.00024246	-0.16843	-8.6877E-05	515.8115824583025	46.651	0.51291	46.703	46.474	46.987	0.051395					25	13	2	0	0	0	0.024447	1	4568	4568		40.778	10.275	1	240670	+		67204	32822	47267	47335	72711	72711					0.0947286167099719
RLPARTIFG	9	Unmodified	_RLPARTIFG_					0	0	0			REV__ENST00000458345.5_2_10:104858695-104859708:-|nuORF	REV__ENST00000458345.5_2_10:104858695-104859708:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.811451	1029.60835	-0.13052	-6.7324E-05	-0.44007	-0.00022699	-0.57059	-0.00029432	515.8111516417655	46.665	0.48306	46.665	46.447	46.93	0	0.013281	-0.00055101	NaN	32.812	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184730	+		67205	32822	47267	47335							0.0947286167099719
RLPARTIFG	9	Unmodified	_RLPARTIFG_					0	0	0			REV__ENST00000458345.5_2_10:104858695-104859708:-|nuORF	REV__ENST00000458345.5_2_10:104858695-104859708:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.811451	1029.60835	-0.47331	-0.00024414	0.1685	8.6916E-05	-0.30481	-0.00015722	515.8114193099907	46.74	0.56339	46.587	46.376	46.94	-0.15301	-0.064297	7.6805E-05	NaN	32.812	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194440	+		67206	32822	47267	47335							0.0947286167099719
RLPAWALVLL	10	Unmodified	_RLPAWALVLL_					0	0	0		ENSG00000248099|ENST00000317306|INSL3;nc|ENSG00000248099|P51460-2|INSL3	ENSG00000248099|ENST00000317306|INSL3	ENSG00000248099|ENST00000317306|INSL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.2791748046875	2	576.368601	1150.72265	-0.50624	-0.00029178	1.033	0.00059541	0.5268	0.00030363	576.3691553304179	40.525	0.88594	40.3	40.004	40.89	-0.22501					32	23	2	0	0	0	0.03519	1	3468	3468		18.324	0.95945	1	204160			67207	10830	47268	47336	72712	72712					0.15331751433086538
RLPCHQKL	8	Unmodified	_RLPCHQKL_					0	0	0		ENST00000395253.3_1_9:99884091-99884715:+|nuORF	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2980041503906	2	497.784379	993.554204	0.92038	0.00045815	-0.52895	-0.0002633	0.39142	0.00019484	497.7839311789745	70.989	0.2562	70.697	70.542	70.798	-0.29291					9	5	2	0	0	0	0.027866	1	8535	8535		42.474	0	1	83325			67208	13508	47269	47337	72713	72713					0.05716946247753185
RLPCHQKL	8	Unmodified	_RLPCHQKL_					0	0	0		ENST00000395253.3_1_9:99884091-99884715:+|nuORF	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.784379	993.554204	0.0064333	3.2024E-06	-1.2849	-0.00063959	-1.2784	-0.00063639	497.7842428163633	71.013	0.2666	70.741	70.614	70.881	-0.27185	0.022254	-0.00033077	NaN	52.299	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34848			67209	13508	47269	47337							0.05716946247753185
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.7743530273438	2	549.774928	1097.5353	-1.2726	-0.00069967	0.49354	0.00027134	-0.77911	-0.00042833	549.7750435228909	43.844	0.87363	43.844	43.44	44.314	0					74	24	4	0	0	0	0.42599	2	4133	4133;4144		96.034	43.097	1	2796200			67210	6690	47270	47338	72714;72715	72714					-0.00956356632968891
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	549.774928	1097.5353	-1.4608	-0.00080311	0.79083	0.00043478	-0.66997	-0.00036833	549.7751763749944	43.974	0.92448	43.829	43.534	44.459	-0.14471	-0.096476	0.00036074	NaN	96.034	81	26	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3019000			67211	6690	47270	47338							-0.00956356632968891
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.774928	1097.5353	-0.90684	-0.00049856	0.29234	0.00016072	-0.61451	-0.00033784	549.7750558718224	44.06	0.72879	43.955	43.583	44.312	-0.10468	0.029735	-0.00018737	NaN	96.034	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438630			67212	6690	47270	47338							-0.00956356632968891
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.774928	1097.5353	-1.0164	-0.00055879	0.57774	0.00031763	-0.43866	-0.00024117	549.7750660954571	44.268	0.80542	44.024	43.632	44.438	-0.2444	0.098085	0.00012644	NaN	96.034	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	488400			67213	6690	47270	47338							-0.00956356632968891
RLPDDDPTAV	10	Unmodified	_RLPDDDPTAV_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.774928	1097.5353	-1.1441	-0.000629	0.60973	0.00033521	-0.53437	-0.00029379	549.7752447230597	44.229	0.75645	44.01	43.709	44.466	-0.21939	0.084502	0.00016161	NaN	96.034	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534250			67214	6690	47270	47338							-0.00956356632968891
RLPDLKSSV	9	Unmodified	_RLPDLKSSV_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7354736328125	2	507.800749	1013.58694	-0.21542	-0.00010939	0.74676	0.00037921	0.53134	0.00026981	507.8009611580564	39.642	0.42545	39.478	39.228	39.653	-0.16458					18	10	2	0	0	0	0.023181	1	3389	3389		71.296	0	1	211350			67215	8985	47271	47339	72716	72716					0.0806943185162936
RLPDLKSSV	9	Unmodified	_RLPDLKSSV_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7361145019531	2	507.800749	1013.58694	-0.22656	-0.00011505	1.2317	0.00062544	1.0051	0.00051039	507.80109758362465	39.744	0.41954	39.514	39.352	39.771	-0.23021					15	10	2	0	0	0	0.024021	1	3388	3388		58.782	14.665	1	167250			67216	8985	47271	47339	72717	72717					0.0806943185162936
RLPDSGVYV	9	Unmodified	_RLPDSGVYV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.2724609375	2	503.271824	1004.5291	-0.64851	-0.00032638	-0.82669	-0.00041605	-1.4752	-0.00074243	503.2720154733063	50.236	0.9682	50.236	49.842	50.81	0					122	28	7	0	0	0	0.70156	2	5249	5249;5261		45.972	0.96952	1	6272600			67217	4006	47272	47340	72718;72719	72718					0.027011699261947797
RLPDSGVYV	9	Unmodified	_RLPDSGVYV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.27276611328125	2	503.271824	1004.5291	-0.13052	-6.5685E-05	-1.2575	-0.00063286	-1.388	-0.00069854	503.27172036571005	50.423	1.1141	50.272	49.854	50.968	-0.15113					117	32	6	0	0	0	0.67687	2	5267	5255;5267		47.657	8.4045	1	5968100			67218	4006	47272	47340	72720;72721	72721					0.027011699261947797
RLPDSGVYV	9	Unmodified	_RLPDSGVYV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.2723693847656	2	503.271824	1004.5291	0.11833	5.9551E-05	-1.5729	-0.00079158	-1.4545	-0.00073203	503.2715317432189	50.115	1.0374	50.196	49.847	50.885	0.08099					121	30	7	0	0	0	0.67687	1	5160	5160		47.657	13.736	1	6742400			67219	4006	47272	47340	72722	72722					0.027011699261947797
RLPDSGVYV	9	Unmodified	_RLPDSGVYV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.271824	1004.5291	0.24001	0.00012079	-1.3816	-0.0006953	-1.1415	-0.00057451	503.27005078953795	50.624	0.37168	50.513	50.341	50.712	-0.11163	0.24014	9.3785E-06	NaN	47.657	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118850			67220	4006	47272	47340							0.027011699261947797
RLPDSGVYV	9	Unmodified	_RLPDSGVYV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.271824	1004.5291	0.061906	3.1155E-05	-3.4667	-0.0017447	-3.4048	-0.0017135	503.27059234927106	50.327	0.15469	50.146	50.017	50.172	-0.18071	-0.12647	-0.0020894	NaN	47.657	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140160			67221	4006	47272	47340							0.027011699261947797
RLPEAIEEV	9	Unmodified	_RLPEAIEEV_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2926635742188	2	528.290214	1054.56587	-0.98513	-0.00052043	0.36181	0.00019114	-0.62332	-0.00032929	528.2904469993462	54.683	1.1455	54.683	54.428	55.573	0					75	32	3	0	0	0	0.40693	2	6008	6008;6019		65.465	8.8331	1	10560000			67222	13216;15499	47273	47341	72723;72724	72723					0.04077421752072041
RLPEAIEEV	9	Unmodified	_RLPEAIEEV_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2916870117188	2	528.290214	1054.56587	-0.41626	-0.00021991	-0.145	-7.6604E-05	-0.56127	-0.00029651	528.2901894371032	54.86	1.3726	54.71	54.375	55.747	-0.15036					75	32	3	0	0	0	0.40693	1	5990	5990		65.465	0	1	10567000			67223	13216;15499	47273	47341	72725	72725					0.04077421752072041
RLPEAIEEV	9	Unmodified	_RLPEAIEEV_					0	0	0		ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENSG00000137106|ENST00000318158|GRHPR;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENST00000377824.8_1_9:37422741-37431094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.291748046875	2	528.290214	1054.56587	0.32488	0.00017163	-0.88967	-0.00047001	-0.5648	-0.00029838	528.2897676778916	54.497	1.0816	54.595	54.328	55.409	0.098015					70	30	3	0	0	0	0.30449	1	5881	5881		75.043	2.1641	1	11205000			67224	13216;15499	47273	47341	72726	72726					0.04077421752072041
RLPEIYIQL	9	Unmodified	_RLPEIYIQL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.8402709960938	2	572.839874	1143.66519	-0.33635	-0.00019267	0.2515	0.00014407	-0.08485	-4.8605E-05	572.8399972082923	76.71	0.99832	76.724	76.448	77.447	0.013496					37	23	3	0	0	0	0.54416	1	9387	9387		56.434	10.462	1	604080			67225	2534	47274	47342	72727	72727					0.09910864436847078
RLPEPGLRGV	10	Unmodified	_RLPEPGLRGV_					0	0	0		ENST00000540260.1_1_12:2904946-2905357:+|nuORF	ENST00000540260.1_1_12:2904946-2905357:+|nuORF	ENST00000540260.1_1_12:2904946-2905357:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.32763671875	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.31896	2	3885	3885;3896		107.01	10.817	1	32648000			67226	16418	47275	47343	72728;72729	72728					0.0977622935411091
RLPEPGLRGV	10	Unmodified	_RLPEPGLRGV_					0	0	0		ENST00000540260.1_1_12:2904946-2905357:+|nuORF	ENST00000540260.1_1_12:2904946-2905357:+|nuORF	ENST00000540260.1_1_12:2904946-2905357:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3271484375	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.42812	1	3816	3816		95.815	8.1187	1	35496000			67227	16418	47275	47343	72730	72730					0.0977622935411091
RLPFLIYQQ	9	Unmodified	_RLPFLIYQQ_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3439331054688	2	589.340041	1176.66553	1.0167	0.00059916	4.1511	0.0024464	5.1678	0.0030456	589.3423343828981	95.387	0.97767	95.391	95.14	96.117	0.0041199					55	22	4	0	0	0	0.92825	1	12092	12092		30.504	6.9809	1	622320	+		67228	21230	47276	47344	72731	72731					0.0842628415668969
RLPGEAQKI	9	Unmodified	_RLPGEAQKI_					0	0	0		ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000124198|ENST00000371917|ARFGEF2;ENST00000591574.5_1_17:76677122-76698292:-|nuORF;ENST00000466543.1_1_7:6210722-6211705:-|nuORF;ENST00000478541.1_1_7:6210722-6217545:-|nuORF;ENST00000462927.5_1_22:37678610-37705275:+|nuORF;nc|ENSG00000108669|Q15438-3|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000008256|O43739|CYTH3;ENSG00000100055|ENST00000248901|CYTH4;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000105443|ENST00000452733|CYTH2;ENSG00000008256|ENST00000350796|CYTH3;ENSG00000066777|ENST00000262215|ARFGEF1	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000066777|ENST00000262215|ARFGEF1	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3006896972656	2	506.300916	1010.58728	-0.74987	-0.00037966	-1.3371	-0.00067698	-2.087	-0.0010566	506.3007790809138	32.552	1.4004	32.552	32.262	33.662	0					89	37	6	0	0	0	0.03849	4	2281	2256;2268;2281;2294		134.81	13.431	1	11282000			67229	116;1344;839	47277	47345	72732;72733;72734;72735	72734					0.08240851571463281
RLPGEAQKI	9	Unmodified	_RLPGEAQKI_					0	0	0		ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000124198|ENST00000371917|ARFGEF2;ENST00000591574.5_1_17:76677122-76698292:-|nuORF;ENST00000466543.1_1_7:6210722-6211705:-|nuORF;ENST00000478541.1_1_7:6210722-6217545:-|nuORF;ENST00000462927.5_1_22:37678610-37705275:+|nuORF;nc|ENSG00000108669|Q15438-3|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000008256|O43739|CYTH3;ENSG00000100055|ENST00000248901|CYTH4;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000105443|ENST00000452733|CYTH2;ENSG00000008256|ENST00000350796|CYTH3;ENSG00000066777|ENST00000262215|ARFGEF1	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000100055|ENST00000248901|CYTH4;ENSG00000066777|ENST00000262215|ARFGEF1	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.30035400390625	2	506.300916	1010.58728	-0.29934	-0.00015156	-1.9663	-0.00099552	-2.2656	-0.0011471	506.30048869807183	32.239	1.6185	32.302	32.003	33.622	0.062885					112	42	6	0	0	0	0.17845	1	2165	2165		93.143	13.431	1	10175000			67230	116;1344;839	47277	47345	72736	72736					0.08240851571463281
RLPGQQQQ	8	Unmodified	_RLPGQQQQ_					0	0	0		KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant;KMT2D|p.C5062Rfs*10|1|0.18|ENSG00000167548|chr12:49026764-49026782|CCGTGGACCAAAGGGCACA/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	KMT2D|p.R5027Tfs*12|1|0.2|ENSG00000167548|chr12:49026888-49026889|-/GGTA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7587585449219	2	477.759415	953.504277	0.32379	0.00015469	-0.89756	-0.00042882	-0.57377	-0.00027412	477.7588476592407	23.101	1.1914	23.101	22.803	23.994	0					44	27	3	0	0	0	0.96719	1	885	885		42.474	3.6683	1	569090			67231	7698	47278	47346	72737	72737					0.02566534843469981
RLPGSSVCD	9	Unmodified	_RLPGSSVCD_					0	0	0		ENST00000305560.10_1_15:45694581-45694656:+|nuORF	ENST00000305560.10_1_15:45694581-45694656:+|nuORF	ENST00000305560.10_1_15:45694581-45694656:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.71533203125	2	467.226559	932.438566	0.5662	0.00026455	-2.0764	-0.00097014	-1.5102	-0.00070559	467.2261806023784	26.378	1.6643	26.46	25.296	26.96	0.081291					64	39	3	0	0	0	0.024397	1	1211	1211		31.53	3.2755	1	119500			67232	11989	47279	47347	72738	72738					-0.030356223937360483
RLPIEDPYL	9	Unmodified	_RLPIEDPYL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	SCAP-SMARCC1|1|fusion;SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.3106079101562	2	558.308406	1114.60226	-0.6691	-0.00037356	0.74087	0.00041363	0.071771	4.0071E-05	558.3087325104336	67.059	0.78848	66.777	66.525	67.314	-0.28148					48	19	3	0	0	0	0.26966	1	7953	7953		79.713	10.085	1	3077000			67233	8376;5345	47280	47348	72739	72739					0.04954298648794975
RLPIEDPYL	9	Unmodified	_RLPIEDPYL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	SCAP-SMARCC1|1|fusion;SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3102416992188	2	558.308406	1114.60226	-0.1757	-9.8094E-05	-0.11419	-6.3754E-05	-0.28989	-0.00016185	558.3083162180644	66.768	0.91338	66.792	66.517	67.43	0.023903					53	21	5	0	0	0	0.14024	2	7878	7867;7878		101.6	13.596	1	2291600			67234	8376;5345	47280	47348	72740;72741	72741					0.04954298648794975
RLPILNVLR	9	Unmodified	_RLPILNVLR_					0	0	0			REV__ENST00000259253.10_1_2:128867259-128867307:+|nuORF	REV__ENST00000259253.10_1_2:128867259-128867307:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3264770507812	2	547.36385	1092.71315	-0.32901	-0.00018009	-4.2458	-0.002324	-4.5748	-0.0025041	547.3614387640566	41.341	0.60331	41.341	41.119	41.722	0					24	16	2	0	0	0	0.018983	1	3727	3727		116.9	26.127	1	156540	+		67235	29586	47281	47349	72742	72742					0.17049983147535386
RLPIPDRG	8	Unmodified	_RLPIPDRG_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2870178222656	2	462.274701	922.534849	-0.30773	-0.00014226	2.9375	0.0013579	2.6297	0.0012157	462.2760537515262	52.73	0.23481	52.73	52.554	52.789	0					7	5	2	0	0	0	0.027866	1	5671	5671		31.955	0	1	158740	+		67236	29163	47282	47350	72743	72743					0.070483132285176
RLPISAEEA	9	Unmodified	_RLPISAEEA_					0	0	0			REV__ENST00000546098.5_1_12:124458034-124458474:+|nuORF	REV__ENST00000546098.5_1_12:124458034-124458474:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.7828674316406	2	493.269281	984.52401	-0.28425	-0.00014021	-0.12131	-5.9837E-05	-0.40556	-0.00020005	493.2693276239054	20.15	0.63557	20.15	19.88	20.516	0					20	12	3	0	0	0	0.023817	1	486	486		60.972	0	1	25405	+		67237	34735	47283	47351	72744	72744					0.03112866063565889
RLPKARFI	8	Unmodified	_RLPKARFI_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.824462890625	2	500.824361	999.634169	0.025261	1.2651E-05	-0.38733	-0.00019398	-0.36207	-0.00018133	500.82403150611617	33.519	2.3717	33.575	33.176	35.547	0.056568					131	61	4	0	0	0	0.91239	1	2377	2377		50.025	2.1089	1	1697700			67238	3867	47284	47352	72745	72745					0.13433755913251844
RLPLLQQLI	9	Unmodified	_RLPLLQQLI_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3275146484375	2	547.358234	1092.70191	-0.34339	-0.00018796	2.1112	0.0011556	1.7678	0.00096763	547.3590223850913	40.85	0.32121	40.85	40.623	40.944	0					12	8	2	0	0	0	0.023181	1	3620	3620		82.305	12.677	1	76112	+		67239	22685	47285	47353	72746	72746					0.15927161053423333
RLPLLQQLI	9	Unmodified	_RLPLLQQLI_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3275756835938	2	547.358234	1092.70191	-0.91483	-0.00050074	-2.7695	-0.0015159	-3.6843	-0.0020166	547.3567585419008	41.827	0.18772	41.695	41.528	41.716	-0.13219					5	4	2	0	0	0	0.023007	1	3769	3769		76.774	12.567	1	81965	+		67240	22685	47285	47353	72747	72747					0.15927161053423333
RLPLPLPWL	9	Unmodified	_RLPLPLPWL_					0	0	0			REV__ENST00000472723.1_1_9:130495774-130495906:-|nuORF	REV__ENST00000472723.1_1_9:130495774-130495906:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.2529907226562	2	552.850045	1103.68554	-0.33309	-0.00018415	-0.78772	-0.00043549	-1.1208	-0.00061964	552.8498594566298	46.028	0.16539	46.08	45.965	46.131	0.051395					6	4	2	0	0	0	0.024517	1	4444	4444		26.796	4.8362	1	74973	+		67241	33217	47286	47354	72748	72748					0.13784079887318512
RLPLRPRLAR	10	Unmodified	_RLPLRPRLAR_					0	0	0			REV__ENST00000371149.7_1_20:57045724-57089863:-|nuORF	REV__ENST00000371149.7_1_20:57045724-57089863:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.240234375	3	416.610557	1246.80984	0.17113	7.1297E-05	-0.98875	-0.00041192	-0.81761	-0.00034063	416.6101639236895	41.961	0.21662	41.73	41.58	41.797	-0.23029					8	5	2	0	0	0	0.03519	1	3707	3707		30.569	6.337	1	63644	+		67242	31151	47287	47355	72749	72749					0.19630970427351713
RLPLVVSFI	9	Unmodified	_RLPLVVSFI_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7894897460938	2	522.334227	1042.6539	-0.30072	-0.00015708	-1.6237	-0.00084813	-1.9244	-0.0010052	522.3336328123478	83.532	1.1592	83.441	82.958	84.117	-0.090454					87	26	5	0	0	0	0.024374	1	10499	10499		49.442	5.3247	1	1281300			67243	2970	47288	47356	72750	72750					0.13428087133388544
RLPLVVSFI	9	Unmodified	_RLPLVVSFI_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7894897460938	2	522.334227	1042.6539	-0.87225	-0.00045561	0.62422	0.00032605	-0.24804	-0.00012956	522.3343672026167	84.432	2.2616	84.36	83.787	86.048	-0.072769					115	53	3	0	0	0	0.024374	1	10499	10499		49.442	5.3247	1	535670			67244	2970	47288	47356	72751	72751					0.13428087133388544
RLPLVVSFI	9	Unmodified	_RLPLVVSFI_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.334227	1042.6539	0.59525	0.00031092	-1.0352	-0.00054075	-0.44	-0.00022983	522.3336784012195	84.536	0.51117	84.398	84.151	84.663	-0.13789	0.029344	-0.0014964	NaN	40.778	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91522			67245	2970	47288	47356							0.13428087133388544
RLPNAGTQV	9	Unmodified	_RLPNAGTQV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.26995849609375	2	478.269616	954.524678	-0.094083	-4.4997E-05	-0.50586	-0.00024194	-0.59995	-0.00028694	478.2695523013231	35.441	0.89573	35.441	35.2	36.096	0					74	23	5	0	0	0	0.043667	3	2718	2718;2729;2741		131.03	37.025	1	14311000			67246	371	47289	47357	72752;72753;72754	72752					0.04559705503288569
RLPNAGTQV	9	Unmodified	_RLPNAGTQV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.2695617675781	2	478.269616	954.524678	-0.71649	-0.00034268	0.47391	0.00022665	-0.24258	-0.00011602	478.2700175118874	35.276	0.95627	35.254	34.712	35.669	-0.021767					62	24	5	0	0	0	0.043667	3	2701	2678;2689;2701		131.03	43.277	1	13836000			67247	371	47289	47357	72755;72756;72757	72757					0.04559705503288569
RLPNAGTQV	9	Unmodified	_RLPNAGTQV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.26971435546875	2	478.269616	954.524678	-0.33779	-0.00016156	0.054056	2.5853E-05	-0.28374	-0.0001357	478.2698037604541	35.322	0.9501	35.366	34.832	35.782	0.04406					59	24	5	0	0	0	0.057894	3	2656	2645;2656;2668		125.81	31.808	1	13813000			67248	371	47289	47357	72758;72759;72760	72759					0.04559705503288569
RLPNNHIGI	9	Unmodified	_RLPNNHIGI_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2982177734375	2	517.298707	1032.58286	-0.86823	-0.00044914	0.11369	5.881E-05	-0.75455	-0.00039033	517.2986268953148	38.7	1.273	38.7	38.222	39.495	0					85	34	4	0	0	0	0.17455	1	3269	3269		94.006	33.034	1	2345900			67249	4979	47290	47358	72761	72761					0.06787387148574453
RLPNNHIGI	9	Unmodified	_RLPNNHIGI_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2984008789062	2	517.298707	1032.58286	-0.60434	-0.00031262	-0.28267	-0.00014623	-0.88701	-0.00045885	517.2984821584282	38.72	1.3129	38.621	38.133	39.446	-0.098755					91	35	3	0	0	0	0.074956	1	3243	3243		119.56	48.179	1	2164700			67250	4979	47290	47358	72762	72762					0.06787387148574453
RLPNNHIGI	9	Unmodified	_RLPNNHIGI_					0	0	0		nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000136068|O75369-6|FLNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2982177734375	2	517.298707	1032.58286	-1.5488	-0.00080119	0.65625	0.00033948	-0.89254	-0.00046171	517.2989393057516	38.925	1.2492	38.951	38.495	39.744	0.02623					96	33	5	0	0	0	0.13494	1	3236	3236		102.77	22.834	1	2050700			67251	4979	47290	47358	72763	72763					0.06787387148574453
RLPNVDLVL	9	Unmodified	_RLPNVDLVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8187255859375	2	519.818941	1037.62333	0.12518	6.5073E-05	-0.67539	-0.00035108	-0.55021	-0.00028601	519.8186456583804	71.282	0.99471	71.282	70.909	71.904	0					100	25	5	0	0	0	0.32811	2	8624	8624;8660		71.877	10.906	1	28736000			67252	9931	47291	47359	72764;72765	72764					0.10602308748298128
RLPNVDLVL	9	Unmodified	_RLPNVDLVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8192138671875	2	519.818941	1037.62333	0.39079	0.00020314	-0.95648	-0.0004972	-0.56569	-0.00029406	519.8185167136494	71.654	3.022	71.366	70.459	73.481	-0.28858					180	76	4	0	0	0	0.32811	2	8671	8671;8717		71.877	5.4482	1	29892000			67253	9931	47291	47359	72766;72767	72766					0.10602308748298128
RLPNVDLVL	9	Unmodified	_RLPNVDLVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8189697265625	2	519.818941	1037.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.563	1	71.573	71.073	72.073	0.010735								0	0	0	0.21285	1	8601	8601		74.255	7.8258	1				67254	9931	47291	47359	72768	72768					0.10602308748298128
RLPPEVNRI	9	Unmodified	_RLPPEVNRI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF;SF3B6|p.R24*|1|0.37|ENSG00000115128|chr2:24074155-24074156|-/TA|frameshift_variant	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3270874023438	2	547.327465	1092.64038	-0.34962	-0.00019136	-0.90071	-0.00049298	-1.2503	-0.00068434	547.3270863236851	41.249	3.9006	41.249	40.314	44.215	0					400	110	6	0	0	0	0.071379	10	3596	3596;3632;3667;3715;3739;3763;3788;3800;3837;3849		120.87	27.673	1	33183000			67255	3409	47292	47360	72769;72770;72771;72772;72773;72774;72775;72776;72777;72778	72769					0.0977622935411091
RLPPEVNRI	9	Unmodified	_RLPPEVNRI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF;SF3B6|p.R24*|1|0.37|ENSG00000115128|chr2:24074155-24074156|-/TA|frameshift_variant	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3272705078125	2	547.327465	1092.64038	-0.57408	-0.00031421	-0.66813	-0.00036569	-1.2422	-0.0006799	547.3272105868834	41.391	3.9118	41.268	40.336	44.248	-0.12317					358	110	5	0	0	0	0.086035	9	3908	3593;3604;3614;3697;3782;3829;3908;3959;3976		115.49	20.77	1	32648000			67256	3409	47292	47360	72779;72780;72781;72782;72783;72784;72785;72786;72787	72785					0.0977622935411091
RLPPEVNRI	9	Unmodified	_RLPPEVNRI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF;SF3B6|p.R24*|1|0.37|ENSG00000115128|chr2:24074155-24074156|-/TA|frameshift_variant	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3269653320312	2	547.327465	1092.64038	-0.71048	-0.00038886	-0.5603	-0.00030667	-1.2708	-0.00069553	547.3272677097772	41.411	3.7298	41.434	40.562	44.292	0.023006					343	105	5	0	0	0	0.062622	10	3718	3564;3574;3598;3610;3706;3718;3767;3779;3791;3920		124.08	25.451	1	35496000			67257	3409	47292	47360	72788;72789;72790;72791;72792;72793;72794;72795;72796;72797	72793					0.0977622935411091
RLPPPALMV	9	Unmodified	_RLPPPALMV_					0	0	0		ENST00000607780.5_1_2:96676383-96687353:+|nuORF	ENST00000607780.5_1_2:96676383-96687353:+|nuORF	ENST00000607780.5_1_2:96676383-96687353:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2971496582031	2	497.29933	992.584108	0.020258	1.0074E-05	-3.1889	-0.0015858	-3.1686	-0.0015757	497.29750224703514	70.405	1.0295	70.417	70.134	71.164	0.012421					50	26	3	0	0	0	0.55828	1	8454	8454		55.504	4.1688	1	893020			67258	17581	47293	47361	72798	72798					0.08751885193100861
RLPPPFPGL	9	Unmodified	_RLPPPFPGL_					0	0	0		nc|ENSG00000028528|Q13596-3|SNX1;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.29754638671875	2	497.297645	992.580737	0.25138	0.00012501	-0.41815	-0.00020795	-0.16677	-8.2935E-05	497.2973155057873	69.385	1.6056	69.385	68.56	70.166	0					126	43	4	0	0	0	0.15889	9	8365	8318;8341;8353;8365;8376;8387;8399;8410;8422		97.473	38.839	1	3758800			67259	18040	47294	47362	72799;72800;72801;72802;72803;72804;72805;72806;72807	72802					0.08414958410764939
RLPPPFPGL	9	Unmodified	_RLPPPFPGL_					0	0	0		nc|ENSG00000028528|Q13596-3|SNX1;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2975769042969	2	497.297645	992.580737	0.5982	0.00029748	-0.81687	-0.00040623	-0.21866	-0.00010874	497.29713382221155	69.867	2.3595	69.574	68.634	70.993	-0.29291					150	63	4	0	0	0	0.12366	7	8364	8353;8364;8376;8388;8414;8425;8436		105.27	28.495	1	3690300			67260	18040	47294	47362	72808;72809;72810;72811;72812;72813;72814	72809					0.08414958410764939
RLPPPFPGL	9	Unmodified	_RLPPPFPGL_					0	0	0		nc|ENSG00000028528|Q13596-3|SNX1;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	nc|ENSG00000028528|Q13596-3|SNX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.29754638671875	2	497.297645	992.580737	-0.24759	-0.00012312	0.022617	1.1247E-05	-0.22497	-0.00011188	497.29756356043026	69.587	1.4924	69.602	68.644	70.137	0.015129					125	38	4	0	0	0	0.10076	10	8323	8246;8265;8277;8288;8300;8311;8323;8335;8346;8359		110.34	28.931	1	3710200			67261	18040	47294	47362	72815;72816;72817;72818;72819;72820;72821;72822;72823;72824	72821					0.08414958410764939
RLPRCPAN	8	Unmodified	_RLPRCPAN_					0	0	0			REV__nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L	REV__nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.77947998046875	2	463.753079	925.491604	0.79712	0.00036967	1.4892	0.0006906	2.2863	0.0010603	463.7540761511667	67.568	1.5188	67.592	66.985	68.504	0.023911					57	38	2	0	0	0	0.027866	1	8018	8018		31.955	0	1	211690	+		67262	20866	47295	47363	72825	72825					0.025878001795717864
RLPRGPGSD	9	Unmodified	_RLPRGPGSD_					0	0	0		ENST00000328649.10_1_15:90777174-90777267:-|nuORF	ENST00000328649.10_1_15:90777174-90777267:-|nuORF	ENST00000328649.10_1_15:90777174-90777267:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.75872802734375	2	477.759415	953.504277	-0.095319	-4.5539E-05	-0.32863	-0.00015701	-0.42395	-0.00020254	477.75903629505365	23.084	0.92888	23.023	22.798	23.727	-0.060862					45	21	4	0	0	0	0.53979	1	875	875		56.721	3.3696	1	599020			67263	12305	47296	47364	72826	72826					0.02566534843469981
RLPRTVSE	8	Unmodified	_RLPRTVSE_					0	0	0			REV__ENST00000466861.1_1_21:46233737-46238015:-|nuORF	REV__ENST00000466861.1_1_21:46233737-46238015:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27783203125	2	479.277441	956.540328	0.83865	0.00040194	-0.029468	-1.4123E-05	0.80918	0.00038782	479.2772019259283	96.265	2.3127	96.128	95.156	97.468	-0.1367					130	52	5	0	0	0	0.97924	1	11903	11903		40.573	0	1	1775700	+		67264	33051	47297	47365	72827	72827					0.06031992020314192
RLPRVATTW	9	Unmodified	_RLPRVATTW_					0	0	0			REV__ENSG00000100450|ENST00000216338|GZMH	REV__ENSG00000100450|ENST00000216338|GZMH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.322021484375	2	550.322183	1098.62981	-0.35236	-0.00019391	-0.03435	-1.8904E-05	-0.38671	-0.00021282	550.322036364401	47.064	0.65501	46.87	46.577	47.232	-0.19387					45	17	3	0	0	0	0.56934	1	4597	4597		54.776	0	1	2767600	+		67265	21121	47298	47366	72828	72828					0.08444246699673386
RLPSILHF	8	Unmodified	_RLPSILHF_					0	0	0		ENST00000460500.1_1_1:85123956-85128195:-|nuORF	ENST00000460500.1_1_1:85123956-85128195:-|nuORF	ENST00000460500.1_1_1:85123956-85128195:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7957763671875	2	491.795269	981.575986	-0.29263	-0.00014392	1.4777	0.00072673	1.1851	0.00058281	491.7958180674967	47.843	1.5335	47.69	46.659	48.193	-0.153					136	43	4	0	0	0	1.0572	1	4817	4817		28.254	2.8041	1	6197300			67266	14659	47299	47367	72829	72829					0.08446074267988024
RLPSKTPSI	9	Unmodified	_RLPSKTPSI_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.8029479980469	2	499.803291	997.59203	-0.72607	-0.00036289	0.014578	7.2861E-06	-0.7115	-0.00035561	499.80316476248163	36.31	1.5502	36.31	35.608	37.158	0					118	41	5	0	0	0	0.23085	2	2879	2871;2879		84.916	7.5735	1	4941900			67267	3678	47300	47368	72830;72831	72831					0.09313735714226823
RLPSKTPSI	9	Unmodified	_RLPSKTPSI_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.803466796875	2	499.803291	997.59203	-1.1233	-0.00056142	0.36085	0.00018035	-0.76244	-0.00038107	499.8033668382612	36.154	1.6334	36.111	35.366	36.999	-0.042454					115	43	5	0	0	0	0.16468	1	2830	2830		96.19	18.873	1	5185300			67268	3678	47300	47368	72832	72832					0.09313735714226823
RLPSKTPSI	9	Unmodified	_RLPSKTPSI_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.8029479980469	2	499.803291	997.59203	-0.40217	-0.00020101	-0.32837	-0.00016412	-0.73054	-0.00036513	499.8029780550689	36.28	1.4239	36.318	35.693	37.117	0.038044					97	38	4	0	0	0	0.16468	2	2814	2804;2814		96.19	15.877	1	4716300			67269	3678	47300	47368	72833;72834	72834					0.09313735714226823
RLPSLRFL	8	Unmodified	_RLPSLRFL_					0	0	0		ENST00000492902.2_1_10:104180789-104181110:-|nuORF	ENST00000492902.2_1_10:104180789-104181110:-|nuORF	ENST00000492902.2_1_10:104180789-104181110:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7961730957031	2	501.316369	1000.61818	-0.22319	-0.00011189	-0.51437	-0.00025786	-0.73756	-0.00036975	501.3158419479347	66.765	0.42696	66.79	66.601	67.028	0.024155					23	9	4	0	0	0	0.027866	1	7871	7871		23.042	1.0826	1	369100			67270	15494	47301	47369	72835	72835					0.11790049676358194
RLPVQPDP	8	Unmodified	_RLPVQPDP_					0	0	0		nc|ENSG00000125846|P52736-3|ZNF133;nc|ENSG00000125846|P52736-4|ZNF133;nc|ENSG00000125846|P52736-2|ZNF133;ENSG00000125846|ENST00000425686|ZNF133;nc|ENSG00000125846|P52736-5|ZNF133;ZNF133|p.P642L|1|0.18|ENSG00000125846|chr20:18316776-18316776|C/T|missense_variant	nc|ENSG00000125846|P52736-3|ZNF133	nc|ENSG00000125846|P52736-3|ZNF133	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.2794494628906	2	461.261259	920.507966	0.0097373	4.4914E-06	-0.053893	-2.4859E-05	-0.044155	-2.0367E-05	461.2610956756308	42.461	0.9164	42.329	42.082	42.998	-0.13219					48	25	3	0	0	0	0.027866	1	3964	3964		63.306	0	1	658880			67271	4151	47302	47370	72836	72836					0.04453204617323081
RLPVSRVE	8	Unmodified	_RLPVSRVE_					0	0	0		nc|nan|Q9H693|C16orf95;ENSG00000260456|ENST00000567970|C16orf95	nc|nan|Q9H693|C16orf95	nc|nan|Q9H693|C16orf95	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.75360107421875	2	478.287808	954.561064	0.14161	6.7728E-05	-2.1196	-0.0010138	-1.978	-0.00094605	478.2864590865385	19.604	0.24487	19.485	19.299	19.543	-0.11872					7	4	2	0	0	0	0.027866	1	417	417		38.806	13.356	1	8580			67272	10943	47303	47371	72837	72837					0.08196582399989438
RLPYVALDV	9	Unmodified	_RLPYVALDV_					0	0	0		ENST00000502907.1_1_5:54826350-54830715:-|nuORF;ENST00000515132.5_1_5:54763945-54830715:-|nuORF;ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1	ENST00000502907.1_1_5:54826350-54830715:-|nuORF	ENST00000502907.1_1_5:54826350-54830715:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.30078125	2	523.305667	1044.59678	-0.91368	-0.00047813	0.87941	0.0004602	-0.034273	-1.7935E-05	523.3061672145052	79.643	1.0895	79.643	79.283	80.373	0					58	25	3	0	0	0	0.6504	1	9893	9893		49.442	1.5259	1	957170			67273	1352	47304	47372	72838	72838					0.07626619856978323
RLQDSPSIYY	10	Unmodified	_RLQDSPSIYY_					0	0	0		ENST00000602101.6_1_19:15568751-15575169:-|nuORF	ENST00000602101.6_1_19:15568751-15575169:-|nuORF	ENST00000602101.6_1_19:15568751-15575169:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3148193359375	2	621.311677	1240.6088	0.018917	1.1754E-05	2.9325	0.001822	2.9514	0.0018338	621.3134783770568	66.633	3.4513	66.385	66.061	69.512	-0.24839					161	90	2	0	0	0	0.64538	1	7685	7685		71.877	13.096	1	29011000			67274	17520	47305	47373	72839	72839					-0.0018780819048060948
RLQDSPSIYY	10	Unmodified	_RLQDSPSIYY_					0	0	0		ENST00000602101.6_1_19:15568751-15575169:-|nuORF	ENST00000602101.6_1_19:15568751-15575169:-|nuORF	ENST00000602101.6_1_19:15568751-15575169:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3148803710938	2	621.311677	1240.6088	-1.4993	-0.00093152	4.4058	0.0027374	2.9065	0.0018058	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.67706	1	7711	7711		68.787	12.066	1	29556000			67275	17520	47305	47373	72840	72840					-0.0018780819048060948
RLQEALTF	8	Unmodified	_RLQEALTF_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2750549316406	2	489.274367	976.53418	-0.92034	-0.0004503	0.99313	0.00048591	0.072794	3.5616E-05	489.2746885333707	20.979	0.73802	20.979	20.753	21.491	0					42	14	5	0	0	0	0.81662	1	603	603		57.811	2.3071	1	319820			67276	4674	47306	47374	72841	72841					0.044974737887855554
RLQEASQTI	9	Unmodified	_RLQEASQTI_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2859497070312	2	523.285463	1044.55637	-1.1016	-0.00057645	0.24488	0.00012814	-0.85672	-0.00044831	523.2853110933474	34.781	0.82739	34.781	34.515	35.343	0					49	21	5	0	0	0	0.079716	1	2629	2629		117.81	41.641	1	1440700			67277	9560	47307	47375	72842	72842					0.03587653466570373
RLQEASQTI	9	Unmodified	_RLQEASQTI_					0	0	0		SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	SMYD4|p.M627Cfs*47|1|0.09|ENSG00000186532|chr17:1786816-1786816|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2861938476562	2	523.285463	1044.55637	-0.61981	-0.00032434	0.080539	4.2145E-05	-0.53927	-0.00028219	523.2854027339432	34.602	0.66033	34.597	34.298	34.958	-0.0045624					44	16	4	0	0	0	0.14181	1	2584	2584		101.25	30.436	1	1472700			67278	9560	47307	47375	72843	72843					0.03587653466570373
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.2852172851562	2	541.285463	1080.55637	-0.32545	-0.00017616	-0.42176	-0.00022829	-0.74721	-0.00040445	541.2851798341842	40.232	0.67189	40.232	39.915	40.587	0					46	18	3	0	0	0	0.40114	2	3525	3515;3525		98.582	38.651	1	4494200			67279	1622	47308	47376	72844;72845	72845					0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2854614257812	2	541.285463	1080.55637	-0.37454	-0.00020273	-0.19674	-0.00010649	-0.57128	-0.00030923	541.2853122830624	40.367	0.8685	40.255	39.904	40.773	-0.11223					52	23	3	0	0	0	0.24462	3	3527	3515;3527;3533		115.49	54.522	1	4053100			67280	1622	47308	47376	72846;72847;72848	72847					0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2853393554688	2	541.285463	1080.55637	-1.354	-0.00073288	0.64775	0.00035062	-0.70621	-0.00038226	541.28576226959	40.454	0.6651	40.477	40.199	40.864	0.023006					43	18	3	0	0	0	0.40114	3	3498	3492;3498;3505		98.582	45.231	1	4495800			67281	1622	47308	47376	72849;72850;72851	72850					0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.2845458984375	2	541.285463	1080.55637	-0.93624	-0.00050677	1.1046	0.00059789	0.16833	9.1116E-05	541.2856173797151	40.4	1.5688	40.251	39.969	41.538	-0.1497					62	41	3	0	0	0	0.6365	3	3493	3482;3493;3505		72.879	26.907	1	4040900			67282	1622	47308	47376	72852;72853;72854	72853					0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2850341796875	2	541.285463	1080.55637	-0.4652	-0.00025181	1.8187	0.00098443	1.3535	0.00073263	541.2862988211541	40.536	1.699	40.311	40.041	41.74	-0.225					95	44	4	0	0	0	0.58878	3	3520	3499;3510;3520		78.264	28.762	1	3910200			67283	1622	47308	47376	72855;72856;72857	72857					0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.28515625	2	541.285463	1080.55637	-2.0762	-0.0011238	3.3624	0.00182	1.2862	0.00069621	541.287130824609	40.588	1.7176	40.358	40.007	41.725	-0.23029					100	45	4	0	0	0	0.6365	2	3509	3509;3522		72.879	29.228	1	3550500			67284	1622	47308	47376	72858;72859	72858					0.01931653466544958
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.3009643554688	2	555.301113	1108.58767	0.15306	8.4997E-05	-0.80071	-0.00044464	-0.64765	-0.00035964	555.3006126419706	46.351	1.5438	46.351	45.852	47.395	0					112	42	4	0	0	0	0.17599	5	4605	4558;4570;4581;4592;4605		124.08	55.881	1	7559000			67285	3721	47309	47377	72860;72861;72862;72863;72864	72864					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.3012084960938	2	555.301113	1108.58767	-1.2514	-0.00069493	0.62424	0.00034664	-0.62721	-0.00034829	555.3014067022635	46.448	1.6868	46.296	45.756	47.443	-0.15156					122	46	5	0	0	0	0.20166	5	4599	4551;4563;4574;4585;4599		120.87	46.703	1	9016600			67286	3721	47309	47377	72865;72866;72867;72868;72869	72869					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.3004150390625	2	555.301113	1108.58767	-0.051914	-2.8828E-05	-0.49149	-0.00027293	-0.54341	-0.00030175	555.3008591887818	46.292	1.5166	46.343	45.998	47.515	0.051395					108	42	5	0	0	0	0.076563	5	4536	4488;4500;4510;4522;4536		141.52	57.873	1	10414000			67287	3721	47309	47377	72870;72871;72872;72873;72874	72874					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.30029296875	2	555.301113	1108.58767	-0.026587	-1.4764E-05	-0.29685	-0.00016484	-0.32344	-0.00017961	555.3008176220834	46.347	0.6472	46.25	45.961	46.608	-0.096649					50	17	4	0	0	0	0.40114	4	4458	4447;4458;4469;4482		98.582	43.498	1	4271200			67288	3721	47309	47377	72875;72876;72877;72878	72876					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.3013305664062	2	555.301113	1108.58767	-0.14285	-7.9325E-05	-0.32864	-0.0001825	-0.47149	-0.00026182	555.3008000362611	46.612	0.55397	46.351	46.083	46.637	-0.26118					48	14	4	0	0	0	0.37509	4	4498	4475;4486;4498;4513		101.25	37.826	1	4333800			67289	3721	47309	47377	72879;72880;72881;72882	72881					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.3013305664062	2	555.301113	1108.58767	-0.76153	-0.00042288	-0.074135	-4.1167E-05	-0.83566	-0.00046405	555.3009347941696	46.485	0.87441	46.283	45.967	46.841	-0.20226					62	24	4	0	0	0	0.50091	2	4465	4465;4477		88.177	38.735	1	6028700			67290	3721	47309	47377	72883;72884	72883					0.037722265006550515
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	579.3294067382812	2	579.32987	1156.64519	-1.2798	-0.00074142	0.6821	0.00039516	-0.59768	-0.00034626	579.3301799195577	47.303	0.90801	47.303	46.967	47.875	0					67	26	4	0	0	0	0.020687	2	4737	4727;4737		148.99	7.4664	1	4546300			67291	4149	47310	47378	72885;72886	72886					0.07313068706230297
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.3297729492188	2	579.32987	1156.64519	-0.20759	-0.00012027	-0.18431	-0.00010678	-0.3919	-0.00022704	579.3295931683987	47.486	0.81158	47.333	47.015	47.827	-0.15301					67	23	5	0	0	0	0.031832	1	4750	4750		140.11	3.1232	1	3648400			67292	4149	47310	47378	72887	72887					0.07313068706230297
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	579.32987	1156.64519	-0.16268	-9.4243E-05	1.6394	0.00094977	1.4767	0.00085552	579.3295490940887	47.157	0.63074	47.06	46.754	47.385	-0.096649	-0.15621	0.001593	NaN	148.99	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605660			67293	4149	47310	47378							0.07313068706230297
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	579.32987	1156.64519	-0.50849	-0.00029458	2.4064	0.0013941	1.8979	0.0010995	579.3296749755223	47.469	0.6595	47.2	46.908	47.567	-0.26939	-0.016554	0.0024817	NaN	148.99	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578450			67294	4149	47310	47378							0.07313068706230297
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	579.32987	1156.64519	-0.55379	-0.00032083	2.3083	0.0013373	1.7545	0.0010164	579.3296229275942	47.24	0.60278	47.047	46.779	47.382	-0.19387	-0.16958	0.002368	NaN	148.99	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469770			67295	4149	47310	47378							0.07313068706230297
RLQEEVHLL	9	Unmodified	_RLQEEVHLL_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;ENSG00000189337|ENST00000376030|KAZN	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8252563476562	2	568.824755	1135.63496	-0.41922	-0.00023847	-1.083	-0.00061602	-1.5022	-0.00085449	568.8245790277446	49.594	0.85956	49.594	49.287	50.146	0					55	23	4	0	0	0	0.17822	1	5138	5138		93.195	16.421	1	4172800			67296	15462	47311	47379	72888	72888					0.07256505771670163
RLQEEVHLL	9	Unmodified	_RLQEEVHLL_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;ENSG00000189337|ENST00000376030|KAZN	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8264770507812	2	568.824755	1135.63496	-0.099766	-5.6749E-05	-0.62491	-0.00035546	-0.72468	-0.00041221	568.8243397132911	49.839	0.66566	49.688	49.33	49.996	-0.1512					47	17	4	0	0	0	0.23085	2	5138	5138;5149		84.916	2.675	1	5002600			67297	15462	47311	47379	72889;72890	72889					0.07256505771670163
RLQEEVHLL	9	Unmodified	_RLQEEVHLL_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;ENSG00000189337|ENST00000376030|KAZN	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.825439453125	2	568.824755	1135.63496	-1.8911	-0.0010757	1.1759	0.00066887	-0.7152	-0.00040682	568.825358016015	49.519	0.59827	49.593	49.279	49.877	0.074192					47	15	4	0	0	0	0.15366	2	5058	5047;5058		98.629	16.389	1	4217900			67298	15462	47311	47379	72891;72892	72892					0.07256505771670163
RLQEEVHLL	9	Unmodified	_RLQEEVHLL_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;ENSG00000189337|ENST00000376030|KAZN	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	568.824755	1135.63496	0.090742	5.1616E-05	-0.76974	-0.00043785	-0.679	-0.00038623	568.8242747793615	49.551	0.4141	49.448	49.224	49.638	-0.10264	-0.11034	-0.00099018	NaN	98.629	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293490			67299	15462	47311	47379							0.07256505771670163
RLQEEVHLL	9	Unmodified	_RLQEEVHLL_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;ENSG00000189337|ENST00000376030|KAZN	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	568.824755	1135.63496	0.11925	6.7833E-05	-1.4458	-0.0008224	-1.3265	-0.00075457	568.8241025628538	49.858	0.55857	49.578	49.28	49.839	-0.27977	0.019389	-0.0017593	NaN	98.629	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272340			67300	15462	47311	47379							0.07256505771670163
RLQEEVHLL	9	Unmodified	_RLQEEVHLL_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;ENSG00000189337|ENST00000376030|KAZN	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	568.824755	1135.63496	0.3138	0.0001785	-1.8295	-0.0010407	-1.5157	-0.00086218	568.8238118731334	49.632	0.41347	49.451	49.268	49.681	-0.18071	-0.10773	-0.0021958	NaN	98.629	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233740			67301	15462	47311	47379							0.07256505771670163
RLQEKGLP	8	Unmodified	_RLQEKGLP_					0	0	0		nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10;ENST00000517942.1_1_8:33229659-33246696:-|nuORF	nc|ENSG00000172728|Q6P4F1-6|FUT10;ENST00000517942.1_1_8:33229659-33246696:-|nuORF	nc|ENSG00000172728|Q6P4F1-6|FUT10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7832946777344	2	470.782359	939.550165	0.20738	9.7632E-05	4.141	0.0019495	4.3484	0.0020472	470.78412015492074	46.62	1.1227	46.524	46.295	47.418	-0.096649					73	30	3	0	0	0	0.74904	1	4502	4502		63.306	2.3343	1	5816600			67302	8298;15920	47312	47380	72893	72893					0.07797180025715988
RLQEKVESA	9	Unmodified	_RLQEKVESA_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2929077148438	2	530.293288	1058.57202	-1.0534	-0.0005586	0.4679	0.00024812	-0.58548	-0.00031048	530.2934310657217	23.844	0.5575	23.844	23.566	24.123	0					36	12	4	0	0	0	0.42604	1	979	979		64.207	7.7735	1	1047400			67303	5071	47313	47381	72894	72894					0.04507939983614051
RLQEKVESA	9	Unmodified	_RLQEKVESA_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2930908203125	2	530.293288	1058.57202	-1.1302	-0.00059934	0.56972	0.00030212	-0.56049	-0.00029722	530.2935052147017	23.835	0.64901	23.782	23.522	24.171	-0.052788					41	14	4	0	0	0	0.42604	2	969	969;982		64.207	7.7735	1	939320			67304	5071	47313	47381	72895;72896	72895					0.04507939983614051
RLQEKVESA	9	Unmodified	_RLQEKVESA_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.29296875	2	530.293288	1058.57202	-0.30203	-0.00016017	-0.33241	-0.00017627	-0.63444	-0.00033644	530.2930172812954	23.723	0.66337	23.799	23.518	24.182	0.076241					38	14	4	0	0	0	0.40693	1	923	923		65.465	3.7741	1	987440			67305	5071	47313	47381	72897	72897					0.04507939983614051
RLQEKVESA	9	Unmodified	_RLQEKVESA_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.293288	1058.57202	-0.099909	-5.2981E-05	-0.37511	-0.00019892	-0.47502	-0.0002519	530.2934024825996	24.103	0.31059	23.887	23.733	24.044	-0.2151	0.069316	-0.00050074	NaN	65.465	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139760			67306	5071	47313	47381							0.04507939983614051
RLQEKVESA	9	Unmodified	_RLQEKVESA_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.293288	1058.57202	-0.59953	-0.00031793	0.23667	0.0001255	-0.36287	-0.00019243	530.2932499740656	23.979	0.30492	23.799	23.563	23.868	-0.17989	-0.018989	0.0001481	NaN	65.465	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110970			67307	5071	47313	47381							0.04507939983614051
RLQEKVESA	9	Unmodified	_RLQEKVESA_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.293288	1058.57202	1.9062	0.0010108	-1.7641	-0.0009355	0.14204	7.5325E-05	530.2924545834561	23.979	0.35561	23.798	23.582	23.938	-0.18089	-0.020324	-0.0019739	NaN	65.465	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115010			67308	5071	47313	47381							0.04507939983614051
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(150)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.7632446289062	2	539.763506	1077.51246	-0.97656	-0.00052711	0.23126	0.00012483	-0.74529	-0.00040228	539.763652923828	31.648	1.2364	31.648	31.257	32.494	0					89	30	4	0	0	0	0.016758	4	2124	2113;2124;2136;2148		153.04	41.979	1	9385900			67309	7318	47314	47382	72898;72899;72900;72901	72899		305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(150)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.763427734375	2	539.763506	1077.51246	-0.89802	-0.00048472	0.5172	0.00027916	-0.38083	-0.00020556	539.7636693634265	34.049	5.0455	34.049	32.224	37.269	0					309	134	6	0	0	0	0.016758	8	2509	2474;2486;2497;2509;2521;2534;2544;2559		153.04	49.612	1	3376100			67310	7318	47314	47382	72902;72903;72904;72905;72906;72907;72908;72909	72905		305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(170)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7640991210938	2	539.763506	1077.51246	-0.81087	-0.00043768	0.051518	2.7808E-05	-0.75935	-0.00040987	539.7635706761158	31.552	1.137	31.564	31.084	32.221	0.011797					79	27	5	0	0	0	0.013065	4	2120	2085;2095;2107;2120		171.53	54.628	1	10775000			67311	7318	47314	47382	72910;72911;72912;72913	72913		305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(140)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.762939453125	2	539.763506	1077.51246	-0.88109	-0.00047558	0.55512	0.00029963	-0.32597	-0.00017594	539.7636782947229	33.866	5.0233	33.861	32.088	37.111	-0.0045624					310	133	6	0	0	0	0.03666	6	2447	2447;2458;2470;2481;2493;2505		136.27	27.74	1	3260000			67312	7318	47314	47382	72914;72915;72916;72917;72918;72919	72914		305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(150)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7635498046875	2	539.763506	1077.51246	-0.9694	-0.00052325	0.26866	0.00014502	-0.70074	-0.00037823	539.7636456976456	31.289	1.6099	31.358	30.786	32.396	0.06896					96	39	5	0	0	0	0.016758	5	2021	2010;2021;2033;2046;2060		153.04	40.596	1	10089000			67313	7318	47314	47382	72920;72921;72922;72923;72924	72921		305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_		RLQESVM(1)EA		RLQESVM(150)EA	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7633666992188	2	539.763506	1077.51246	-1.0569	-0.00057048	0.86843	0.00046875	-0.18848	-0.00010173	539.7638381138581	33.945	5.4323	34	32.077	37.51	0.054897					285	143	4	0	0	0	0.020687	7	2465	2408;2417;2429;2441;2452;2465;2478		148.99	54.98	1	3331100			67314	7318	47314	47382	72925;72926;72927;72928;72929;72930;72931	72930		305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_					0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.763506	1077.51246	-0.37755	-0.00020379	-0.067557	-3.6465E-05	-0.44511	-0.00024025	539.763409760591	31.731	0.56241	31.49	31.258	31.82	-0.24109	-0.023955	-0.00025447	NaN	171.53	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	957090			67315	7318	47314	47382				305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_					0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.763506	1077.51246	-0.3906	-0.00021083	-0.15087	-8.1433E-05	-0.54147	-0.00029227	539.7633716957539	31.671	0.92431	31.486	31.245	32.169	-0.18503	-0.027948	-0.00034441	NaN	171.53	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	972870			67316	7318	47314	47382				305			-0.02319699022086752
RLQESVMEA	9	Oxidation (M)	_RLQESVM(Oxidation (M))EA_					0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.763506	1077.51246	-1.335	-0.0007206	0.95351	0.00051467	-0.38151	-0.00020592	539.7638893157307	31.691	1.1442	31.538	31.305	32.449	-0.15231	0.024076	0.0008478	NaN	171.53	43	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	964750			67317	7318	47314	47382				305			-0.02319699022086752
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7659912109375	2	531.766049	1061.51754	-0.39379	-0.00020941	-0.13837	-7.358E-05	-0.53216	-0.00028299	531.7659634065226	40.294	1.6621	40.294	39.733	41.396	0					90	46	4	0	0	0	0.19099	2	3535	3523;3535		90.37	11.228	1	13000000			67318	7318	47314	47383	72932;72933	72933					-0.010753951594551836
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7655029296875	2	531.766049	1061.51754	-0.082309	-4.3769E-05	-0.30636	-0.00016291	-0.38867	-0.00020668	531.7658555488537	40.375	1.8675	40.263	39.83	41.697	-0.11223					110	51	4	0	0	0	0.14024	3	3529	3506;3517;3529		101.6	20.597	1	12722000			67319	7318	47314	47383	72934;72935;72936	72936					-0.010753951594551836
RLQESVMEA	9	Unmodified	_RLQESVMEA_					0	0	0		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.765380859375	2	531.766049	1061.51754	-0.85247	-0.00045331	0.29816	0.00015855	-0.55431	-0.00029476	531.7661621990089	40.484	1.4012	40.507	40.162	41.564	0.023006					98	39	4	0	0	0	0.26966	2	3502	3502;3515		79.713	14.247	1	12443000			67320	7318	47314	47383	72937;72938	72937					-0.010753951594551836
RLQGELQAV	9	Unmodified	_RLQGELQAV_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2902526855469	2	507.290548	1012.56654	-1.0778	-0.00054674	1.8861	0.00095681	0.80836	0.00041007	507.2905469412003	43.576	0.72354	43.576	43.186	43.91	0					60	19	4	0	0	0	0.30449	1	4095	4095		75.043	8.614	1	3376800			67321	8600	47315	47384	72939	72939					0.060762611917994036
RLQGELQAV	9	Unmodified	_RLQGELQAV_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.29022216796875	2	507.290548	1012.56654	-0.95503	-0.00048448	1.661	0.00084259	0.70592	0.00035811	507.2904778481497	43.727	0.71623	43.582	43.241	43.958	-0.14471					56	19	4	0	0	0	0.30449	1	4103	4103		75.043	12.936	1	4101800			67322	8600	47315	47384	72940	72940					0.060762611917994036
RLQGELQAV	9	Unmodified	_RLQGELQAV_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2897033691406	2	507.290548	1012.56654	-0.0051443	-2.6097E-06	0.94669	0.00048025	0.94155	0.00047764	507.29003077260427	43.631	0.64995	43.661	43.267	43.917	0.030827					50	17	4	0	0	0	0.30449	1	4051	4051		75.043	6.2565	1	3699100			67323	8600	47315	47384	72941	72941					0.060762611917994036
RLQGLRHF	8	Unmodified	_RLQGLRHF_					0	0	0			REV__ENSG00000255690|ENST00000539664|TRIL	REV__ENSG00000255690|ENST00000539664|TRIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7994384765625	2	513.801417	1025.58828	-0.21868	-0.00011236	-3.4309	-0.0017628	-3.6496	-0.0018751	513.7993107589991	19.551	0.62602	19.432	19.151	19.777	-0.11872					48	12	6	0	0	0	0.75307	1	409	409		62.978	4.7485	1	709780	+		67324	29072	47316	47385	72942	72942					0.07651110731012523
RLQILAERP	9	Unmodified	_RLQILAERP_					0	0	0			REV__nc|ENSG00000198315|Q15776-2|ZKSCAN8	REV__nc|ENSG00000198315|Q15776-2|ZKSCAN8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3349609375	2	548.33529	1094.65603	-1.2642	-0.00069323	0.16338	8.9587E-05	-1.1009	-0.00060364	548.3353500196921	43.555	1.0073	43.555	43.113	44.12	0					80	27	5	0	0	0	0.42604	1	4114	4114		64.207	6.396	1	7840100	+		67325	28412	47317	47386	72943	72943					0.11248515871147902
RLQKGVLL	8	Unmodified	_RLQKGVLL_					0	0	0		ENST00000530702.1_2_11:10827460-10828835:-|nuORF;ENST00000526148.5_2_11:10827460-10828835:-|nuORF;ENST00000528562.5_1_11:10827534-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.79827880859375	2	463.810919	925.607286	-0.19042	-8.8319E-05	0.11732	5.4414E-05	-0.073102	-3.3905E-05	463.8108349192635	42.102	0.54215	41.969	41.641	42.183	-0.13219					22	15	2	0	0	0	0.027866	1	3777	3777		33.516	0	1	264280			67326	16113	47318	47387	72944	72944					0.14150647302096786
RLQLRGIA	8	Unmodified	_RLQLRGIA_					0	0	0			REV__ENSG00000133135|ENST00000255499|RNF128;REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.79827880859375	2	463.798343	925.582134	-0.23124	-0.00010725	0.47863	0.00022199	0.24739	0.00011474	463.7984155089555	41.773	0.96626	41.641	41.352	42.319	-0.13219					65	27	4	0	0	0	0.96719	1	3777	3777		42.474	1.9018	1	2466000	+		67327	36668;23358	47319	47388	72945	72945					0.1163659249950797
RLQLRGIA	8	Unmodified	_RLQLRGIA_					0	0	0			REV__ENSG00000133135|ENST00000255499|RNF128;REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	463.798343	925.582134	0.079497	3.6871E-05	0.13741	6.3729E-05	0.2169	0.0001006	463.79827981471084	41.584	0.89548	41.584	41.292	42.187	0	-0.028497	-0.00011146	NaN	42.474	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2631300	+		67328	36668;23358	47319	47388							0.1163659249950797
RLQPPPRPRP	10	Unmodified	_RLQPPPRPRP_					0	0	0			REV__ENSG00000142733|ENST00000357582|MAP3K6	REV__ENSG00000142733|ENST00000357582|MAP3K6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.9031677246094	3	405.247396	1212.72036	0.83194	0.00033714	-0.50704	-0.00020548	0.3249	0.00013167	405.24713228965044	22.158	1.2672	21.969	21.386	22.653	-0.18894					61	26	3	0	0	0	0.03519	1	763	763		21.686	0	1	99942	+		67329	24181	47320	47389	72946	72946					0.12250715747973118
RLQQAQAL	8	Unmodified	_RLQQAQAL_					0	0	0		ENSG00000267368|ENST00000340457|UPK3BL1	ENSG00000267368|ENST00000340457|UPK3BL1	ENSG00000267368|ENST00000340457|UPK3BL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.27227783203125	2	464.272158	926.529764	0.84499	0.0003923	-0.8892	-0.00041283	-0.04421	-2.0526E-05	464.2716189052479	19.841	0.59101	19.608	19.325	19.916	-0.23345					24	11	3	0	0	0	0.99042	1	449	449		38.806	1.647	1	195380			67330	10982	47321	47390	72947	72947					0.06356009365879345
RLQQASLPLL	10	Unmodified	_RLQQASLPLL_					0	0	0		CON__P00766	CON__P00766	CON__P00766	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2677001953125	2	569.850773	1137.68699	2.3988	0.0013669	-1.5895	-0.00090578	0.80926	0.00046116	569.849953399632	18.94	0.24756	18.706	18.533	18.78	-0.23345					6	4	2	0	0	0	0.03519	1	334	334		45.972	14.017	1	9882.5		+	67331	498	47322	47391	72948	72948					0.12365669185419392
RLQQTQAQV	9	Unmodified	_RLQQTQAQV_					0	0	0		nc|ENSG00000139190|P23763-2|VAMP1;ENSG00000220205|ENST00000316509|VAMP2;nc|ENSG00000139190|P23763-3|VAMP1;ENSG00000139190|ENST00000396308|VAMP1;ENST00000539047.1_1_12:6574469-6579793:-|nuORF	nc|ENSG00000139190|P23763-2|VAMP1	nc|ENSG00000139190|P23763-2|VAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2973022460938	2	536.298904	1070.58326	-0.57622	-0.00030903	1.5519	0.0008323	0.97571	0.00052327	536.299409474846	28.684	0.71514	28.765	28.452	29.167	0.080811					36	17	4	0	0	0	0.34489	1	1646	1646		69.628	2.6657	1	1231400			67332	5311	47323	47392	72949	72949					0.050787620777555276
RLQQVDPVLLK	11	Unmodified	_RLQQVDPVLLK_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.522705078125	3	436.938117	1307.79252	0.13757	6.0109E-05	3.7621	0.0016438	3.8997	0.0017039	436.9396831780736	46.86	1.4373	46.666	46.38	47.818	-0.19387					129	39	4	0	0	0	0.024735	1	4717	4717		27.644	9.8108	1	1131100			67333	4610	47324	47393	72950	72950					0.15093585311024071
RLQQVDPVLLK	11	Unmodified	_RLQQVDPVLLK_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	436.938117	1307.79252	0.079743	3.4843E-05	3.8073	0.0016635	3.887	0.0016984	436.93966491915893	47.049	1.3708	46.78	46.526	47.897	-0.26939	0.090683	-7.7034E-05	NaN	21.78	120	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931990			67334	4610	47324	47393							0.15093585311024071
RLQRGKTEP	9	Unmodified	_RLQRGKTEP_					0	0	0		ENST00000340022.6_2_7:91874316-91874832:-|nuORF	ENST00000340022.6_2_7:91874316-91874832:-|nuORF	ENST00000340022.6_2_7:91874316-91874832:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.8146362304688	2	542.814722	1083.61489	-1.6944	-0.00091974	1.1918	0.00064692	-0.50261	-0.00027283	542.8153175248375	29.716	0.73338	29.794	29.566	30.3	0.078344					47	17	4	0	0	0	0.29158	1	1795	1795		76.774	5.4784	1	1605300			67335	12467	47325	47394	72951	72951					0.07642754831704224
RLQTALLV	8	Unmodified	_RLQTALLV_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;ENSG00000102962|ENST00000219235|CCL22	ENSG00000137877|ENST00000320955|SPTBN5;ENSG00000102962|ENST00000219235|CCL22	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2950439453125	2	457.295102	912.575651	-0.1327	-6.0685E-05	0.13616	6.2265E-05	0.0034546	1.5798E-06	457.29508557830275	56.119	0.76651	55.963	55.554	56.321	-0.15601					62	20	4	0	0	0	0.6536	1	6219	6219		71.296	2.811	1	6013900			67336	5175;2449	47326	47395	72952	72952					0.11586654548125352
RLQTKTGVLHL	11	Unmodified	_RLQTKTGVLHL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1;SIGLEC1|p.I319Sfs*12|1|0.19|ENSG00000088827|chr20:3703844-3703844|G/-|frameshift_variant	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5926513671875	3	422.594461	1264.76155	-0.08907	-3.7641E-05	-4.0755	-0.0017223	-4.1646	-0.0017599	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0408	1	5215	5215		27.644	5.9582	1	15587000			67337	1878	47327	47396	72953	72953					0.13976431996820793
RLQVNRKKQVK	11	Unmodified	_RLQVNRKKQVK_					0	0	0		ENST00000447486.5_2_2:172180771-172187177:-|nuORF;ENST00000463392.5_1_2:172180771-172183527:-|nuORF;ENST00000464491.5_1_2:172180771-172182690:-|nuORF;ENST00000438609.5_1_2:172180771-172195744:-|nuORF;ENSG00000123600|ENST00000375258|METTL8	ENST00000447486.5_2_2:172180771-172187177:-|nuORF	ENST00000447486.5_2_2:172180771-172187177:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.26617431640625	3	466.30016	1395.87865	0.15905	7.4166E-05	0.93904	0.00043787	1.0981	0.00051204	466.30061020487335	46.427	0.43403	46.33	46.039	46.473	-0.096649					20	11	3	0	0	0	0.02484	1	4442	4442		17.167	5.2344	1	176750			67338	3989	47328	47397	72954	72954					0.19654589936385491
RLQYYVPR	8	Unmodified	_RLQYYVPR_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3272705078125	2	547.808908	1093.60326	-0.70465	-0.00038601	-0.31842	-0.00017443	-1.0231	-0.00056044	547.8085381381882	42.35	0.95881	42.376	42.152	43.111	0.026012					61	26	3	0	0	0	0.027866	1	3803	3803		88.643	14.668	1	3398400			67339	4051	47329	47398	72955	72955					0.060205578083468936
RLRAIEDRML	10	Unmodified	_RLRAIEDRML_					0	0	0			REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.91168212890625	3	424.911685	1271.71322	-0.60793	-0.00025832	2.5176	0.0010698	1.9097	0.00081145	424.9127001724938	39.308	1.0729	39.331	38.768	39.84	0.023727					98	29	5	0	0	0	0.96069	1	3287	3287		50.034	2.8058	1	12649000	+		67340	27414	47330	47399	72956	72956					0.08823615085225356
RLRALFLR	8	Unmodified	_RLRALFLR_					0	0	0		ENSG00000132000|ENST00000588872|PODNL1	ENSG00000132000|ENST00000588872|PODNL1	ENSG00000132000|ENST00000588872|PODNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.8126220703125	2	522.843085	1043.67162	0.063398	3.3147E-05	-1.6107	-0.00084216	-1.5473	-0.00080901	522.8421146140021	22.946	0.32692	22.744	22.546	22.873	-0.20193					14	6	3	0	0	0	0.027866	1	878	878		31.955	0	1	47699			67341	4567	47331	47400	72957	72957					0.1515284717886516
RLRALITSIR	10	Unmodified	_RLRALITSIR_					0	0	0		ENST00000553142.5_1_12:58021700-58025915:-|nuORF;nc|ENSG00000135454|Q00973-2|B4GALNT1;ENSG00000135454|ENST00000341156|B4GALNT1	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	ENST00000553142.5_1_12:58021700-58025915:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.23052978515625	3	400.262935	1197.76697	1.8267	0.00073115	-3.0748	-0.0012307	-1.2481	-0.00049958	400.2611908751112	21.882	0.29057	21.954	21.879	22.17	0.071487					9	5	2	0	0	0	0.03519	1	676	676		38.754	7.6855	1	25119			67342	4898	47332	47401	72958	72958					0.17600155579248167
RLRDRDRERD	10	Unmodified	_RLRDRDRERD_					0	0	0		nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;ENSG00000204104|ENST00000373327|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.7846374511719	3	462.915145	1385.72361	-0.90613	-0.00041946	1.9866	0.00091963	1.0805	0.00050017	462.91719918761993	43.708	0.31554	43.489	43.282	43.597	-0.21939					12	8	2	0	0	0	0.03519	1	3977	3977		42.338	7.1599	1	94359			67343	10300	47333	47402	72959	72959					0.04617314064034872
RLRDRQAL	8	Unmodified	_RLRDRQAL_					0	0	0		nc|ENSG00000149201|Q6ZN84-3|CCDC81;nc|ENSG00000149201|Q6ZN84-2|CCDC81;ENSG00000149201|ENST00000445632|CCDC81;CCDC81|p.I444Vfs*34|1|0.06|ENSG00000149201|chr11:86412496-86412497|-/GGTT|frameshift_variant	nc|ENSG00000149201|Q6ZN84-3|CCDC81	nc|ENSG00000149201|Q6ZN84-3|CCDC81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7898559570312	2	514.309606	1026.60466	-0.43522	-0.00022384	0.87271	0.00044884	0.43748	0.000225	514.3099347074273	21.703	0.47258	21.613	21.354	21.826	-0.090092					16	9	2	0	0	0	0.027866	1	709	709		71.296	15.791	1	46964			67344	6070	47334	47403	72960	72960					0.0924219189712403
RLREALQPL	9	Unmodified	_RLREALQPL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3346557617188	2	548.33529	1094.65603	-1.167	-0.00063989	0.55068	0.00030196	-0.61628	-0.00033793	548.3355173007352	29.314	0.87937	29.392	29.128	30.007	0.078346					56	21	4	0	0	0	0.35646	1	1736	1736		68.787	1.2932	1	1264600			67345	4388	47335	47404	72961	72961					0.11248515871170639
RLREELLRK	9	Unmodified	_RLREELLRK_					0	0	0			REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.8804931640625	2	606.880396	1211.74624	-1.494	-0.00090668	1.3435	0.00081536	-0.15047	-9.1318E-05	606.8810921233096	26.499	0.84494	26.263	25.948	26.792	-0.23603					60	22	4	0	0	0	0.51687	1	1393	1393		51.335	10.557	1	1878800	+		67346	27657	47336	47405	72962	72962					0.14883565199579607
RLREELLRK	9	Unmodified	_RLREELLRK_					0	0	0			REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	606.880396	1211.74624	-1.494	-0.00090668	1.3435	0.00081536	-0.15047	-9.1318E-05	606.8810921233096	26.499	0.84494	26.263	25.948	26.792	-0.23603	0.066397	0.00063656	NaN	51.335	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1878800	+		67347	27657	47336	47405							0.14883565199579607
RLREELLRK	9	Unmodified	_RLREELLRK_					0	0	0			REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	606.880396	1211.74624	-0.58982	-0.00035795	0.38992	0.00023663	-0.1999	-0.00012132	606.8805597220211	26.211	0.98548	26.042	25.737	26.723	-0.16816	-0.15385	-0.00052089	NaN	51.335	80	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1818200	+		67348	27657	47336	47405							0.14883565199579607
RLREELLRK	9	Unmodified	_RLREELLRK_					0	0	0			REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	REV__SRPK3|p.G377Afs*16|1|0.09|ENSG00000184343|chrX:153784192-153784192|G/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	606.880396	1211.74624	-1.0815	-0.00065632	0.95232	0.00057794	-0.12914	-7.8372E-05	606.880861580956	26.447	0.88624	26.284	25.951	26.837	-0.16331	0.087456	0.00016173	NaN	51.335	70	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1572900	+		67349	27657	47336	47405							0.14883565199579607
RLREESMAN	9	Oxidation (M)	_RLREESM(Oxidation (M))AN_		RLREESM(1)AN		RLREESM(51)AN	0	0	1		chr17:49045065-49045890|345|18.66|0.56|5.05|+|1|IGF2BP1,IGF2BP1|1	chr17:49045065-49045890|345|18.66|0.56|5.05|+|1|IGF2BP1,IGF2BP1|1	chr17:49045065-49045890|345|18.66|0.56|5.05|+|1|IGF2BP1,IGF2BP1|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2703247070312	2	561.272029	1120.52951	-0.77983	-0.00043769	-3.9576	-0.0022213	-4.7375	-0.002659	561.2702975131176	26.275	3.302	26.039	25.762	29.064	-0.23603					301	81	8	0	0	0	0.62163	1	1396	1396		51.335	8.4712	1	235830000			67350	356	47337	47406	72963	72963		6			-0.02593778416257919
RLREHLTI	8	Unmodified	_RLREHLTI_					0	0	0			REV__ENSG00000188263|ENST00000695950|IL17REL	REV__ENSG00000188263|ENST00000695950|IL17REL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2420654296875	2	519.314358	1036.61416	0.35504	0.00018438	0.36602	0.00019008	0.72106	0.00037446	519.3136297114263	69.425	1.6029	69.174	68.579	70.182	-0.25063					73	38	3	0	0	0	0.027866	1	8011	8011		31.955	11.958	1	253630	+		67351	28024	47338	47407	72964	72964					0.09731960182648436
RLRENPRLI	9	Unmodified	_RLRENPRLI_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.8587036132812	2	583.859464	1165.70437	0.21983	0.00012835	-1.1238	-0.00065616	-0.90401	-0.00052782	583.8586504901666	97.148	1.1572	97.024	96.617	97.774	-0.12368					90	25	5	0	0	0	0.6504	1	12066	12066		49.442	16.629	1	1344500			67352	7383	47339	47408	72965	72965					0.1281500951106409
RLREVKQV	8	Unmodified	_RLREVKQV_					0	0	0		ENSG00000172689|ENST00000308287|MS4A10	ENSG00000172689|ENST00000308287|MS4A10	ENSG00000172689|ENST00000308287|MS4A10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.3237915039062	2	514.322183	1026.62981	-0.54897	-0.00028235	2.8753	0.0014788	2.3263	0.0011965	514.3230663785195	40.999	0.76702	41.022	40.797	41.564	0.023006					48	21	4	0	0	0	0.83003	1	3608	3608		56.721	3.3696	1	2329000			67353	8296	47340	47409	72966	72966					0.11756246699701478
RLRFLPAL	8	Unmodified	_RLRFLPAL_					0	0	0		nc|ENSG00000114248|Q6UY01-4|LRRC31;ENSG00000114248|ENST00000316428|LRRC31;nc|ENSG00000114248|Q6UY01-2|LRRC31;LRRC31|p.S370L|1|0.1|ENSG00000114248|chr3:169851669-169851669|G/A|missense_variant	nc|ENSG00000114248|Q6UY01-4|LRRC31	nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3072204589844	2	493.318912	984.62327	0.20156	9.9433E-05	2.3539	0.0011612	2.5554	0.0012606	493.3197706785685	101.14	0.3387	101.13	100.85	101.19	-0.0054398					11	7	2	0	0	0	0.027866	1	12839	12839		57.453	11.501	1	42144			67354	3349	47341	47410	72967	72967					0.13034353538967025
RLRGAGVGL	9	Unmodified	_RLRGAGVGL_					0	0	0		ENST00000416938.5_1_7:99704853-99705072:+|nuORF	ENST00000416938.5_1_7:99704853-99705072:+|nuORF	ENST00000416938.5_1_7:99704853-99705072:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.78265380859375	2	449.782693	897.550834	2.9379	0.0013214	-2.8681	-0.00129	0.069822	3.1405E-05	449.7812194020037	18.307	0.58764	18.307	18.038	18.626	0					23	11	4	0	0	0	0.90698	1	283	283		31.955	1.4512	1	212720			67355	13908	47342	47411	72968	72968					0.09796019465420613
RLRGDINKL	9	Unmodified	_RLRGDINKL_					0	0	0		ENST00000531564.1_1_8:11281884-11301161:-|nuORF;ENSG00000154319|ENST00000284486|FAM167A	ENST00000531564.1_1_8:11281884-11301161:-|nuORF	ENST00000531564.1_1_8:11281884-11301161:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8357543945312	2	542.832914	1083.65128	0.26753	0.00014523	3.1452	0.0017073	3.4127	0.0018525	542.834505528044	70.725	0.36531	70.432	70.263	70.629	-0.29292					21	8	3	0	0	0	0.6504	1	8507	8507		49.442	0	1	1997700			67356	6403	47343	47412	72969	72969					0.11279631728416462
RLRGLVAPE	9	Unmodified	_RLRGLVAPE_					0	0	0			REV__nc|ENSG00000105695|P20916-3|MAG	REV__nc|ENSG00000105695|P20916-3|MAG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.8085632324219	2	505.808908	1009.60326	-0.092728	-4.6903E-05	-0.19997	-0.00010115	-0.2927	-0.00014805	505.8087263252339	57.84	0.68101	57.65	57.148	57.829	-0.19017					46	17	4	0	0	0	0.92825	1	6349	6349		30.504	0	1	2504000	+		67357	21555	47344	47413	72970	72970					0.09884557808356931
RLRGPGTLV	9	Unmodified	_RLRGPGTLV_					0	0	0		ENST00000571074.5_1_17:7530728-7531173:-|nuORF;ENST00000572224.1_1_17:7530636-7531149:-|nuORF	ENST00000571074.5_1_17:7530728-7531173:-|nuORF	ENST00000571074.5_1_17:7530728-7531173:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.8038024902344	2	484.803626	967.592698	-0.63754	-0.00030908	-0.3082	-0.00014942	-0.94574	-0.0004585	484.80337909492044	34.962	0.74818	34.962	34.706	35.455	0					33	19	2	0	0	0	0.72875	1	2653	2653		44.117	3.3386	1	3371800			67358	17034	47345	47414	72971	72971					0.10760575153949503
RLRGSIAE	8	Unmodified	_RLRGSIAE_					0	0	0		ENST00000333926.5_1_10:60028855-60028942:+|nuORF	ENST00000333926.5_1_10:60028855-60028942:+|nuORF	ENST00000333926.5_1_10:60028855-60028942:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2642517089844	2	451.264333	900.514114	-0.053259	-2.4034E-05	-0.24006	-0.00010833	-0.29332	-0.00013237	451.26416793174377	33.116	0.67712	32.916	32.609	33.286	-0.20019					49	16	4	0	0	0	0.93274	1	2352	2352		47.916	1.9636	1	5445200			67359	12375	47346	47415	72972	72972					0.05987722848840349
RLRHAVPCL	9	Unmodified	_RLRHAVPCL_					0	0	0			REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense	REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2568359375	2	532.810928	1063.6073	-0.39547	-0.00021071	-4.0364	-0.0021506	-4.4318	-0.0023613	532.8086784553069	40.868	0.6693	40.868	40.623	41.292	0					51	18	4	0	0	0	0.024466	1	3605	3605		33.516	10.473	1	2368800	+		67360	37620	47347	47416	72973	72973					0.07804324030416865
RLRHAVPCL	9	Unmodified	_RLRHAVPCL_					0	0	0			REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense	REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.810928	1063.6073	-0.47261	-0.00025181	-3.9621	-0.0021111	-4.4347	-0.0023629	532.8086515393438	41.037	0.80218	41.06	40.83	41.633	0.023006	0.11776	0.0002288	NaN	12.207	61	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2185200	+		67361	37620	47347	47416							0.07804324030416865
RLRHPAVHS	9	Unmodified	_RLRHPAVHS_					0	0	0		ENST00000262096.12_1_8:17014207-17053083:+|nuORF	ENST00000262096.12_1_8:17014207-17053083:+|nuORF	ENST00000262096.12_1_8:17014207-17053083:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2696533203125	2	536.809774	1071.60499	-0.82253	-0.00044154	0.99196	0.0005325	0.16944	9.0955E-05	536.810161698612	28.967	0.74224	29.048	28.826	29.569	0.080811					47	18	4	0	0	0	0.024405	1	1730	1730		53.351	14.099	1	2267800			67362	11487	47348	47417	72974	72974					0.07205611616973329
RLRHVARGI	9	Unmodified	_RLRHVARGI_					0	0	0		nc|ENSG00000272395|K9M1U5-2|IFNL4;nc|ENSG00000272395|K9M1U5|IFNL4	nc|ENSG00000272395|K9M1U5-2|IFNL4	nc|ENSG00000272395|K9M1U5-2|IFNL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7770385742188	2	539.341241	1076.66793	-0.99372	-0.00053595	3.2891	0.001774	2.2954	0.001238	539.3425795412292	57.546	0.26426	57.368	57.169	57.434	-0.17775					9	6	2	0	0	0	0.024541	1	6265	6265		17.365	2.5001	1	66276			67363	18793	47349	47418	72975	72975					0.13266177405034796
RLRILEPH	8	Unmodified	_RLRILEPH_					0	0	0		ENSG00000119986|ENST00000370626|AVPI1	ENSG00000119986|ENST00000370626|AVPI1	ENSG00000119986|ENST00000370626|AVPI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.3165893554688	2	517.3169	1032.61925	-0.41609	-0.00021525	0.017276	8.9373E-06	-0.39881	-0.00020631	517.3167950938025	29.311	0.85257	29.139	28.808	29.66	-0.17258					57	19	4	0	0	0	0.81662	1	1793	1793		57.811	4.4598	1	1941900			67364	3785	47350	47419	72976	72976					0.10424264045263953
RLRIPRSY	8	Unmodified	_RLRIPRSY_					0	0	0		ENST00000503042.5_1_5:1325672-1325828:-|nuORF	ENST00000503042.5_1_5:1325672-1325828:-|nuORF	ENST00000503042.5_1_5:1325672-1325828:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7737426757812	2	530.82235	1059.63015	-0.52772	-0.00028012	-4.3803	-0.0023252	-4.908	-0.0026053	530.8197523564509	57.414	0.74044	57.18	56.843	57.583	-0.23363					26	19	2	0	0	0	0.027866	1	6232	6232		50.025	2.1089	1	183360			67365	15684	47351	47420	72977	72977					0.10271666419566827
RLRKIHRLRA	10	Unmodified	_RLRKIHRLRA_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2;REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.24761962890625	3	440.29334	1317.85819	-0.005895	-2.5955E-06	-2.3333	-0.0010273	-2.3392	-0.0010299	440.29218792733883	57.97	1.3891	58.062	57.537	58.926	0.091217					84	37	3	0	0	0	0.03519	1	6455	6455		22.58	2.5492	1	611110	+		67366	21364;35380	47352	47421	72978	72978					0.21197464067245164
RLRKYSKAMP	10	Unmodified	_RLRKYSKAMP_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	625.3677368164062	2	625.363524	1248.7125	0.41909	0.00026209	4.4795	0.0028013	4.8986	0.0030634	625.3661581229959	105.22	0.44252	105.22	104.99	105.43	0.00096893					33	12	3	0	0	0	1.0002	1	13461	13461		45.972	4.5456	1	1378300	+		67367	37004	47353	47422	72979	72979					0.09808820436182941
RLRLPLEA	8	Unmodified	_RLRLPLEA_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7782287597656	2	484.306001	966.597449	-0.63028	-0.00030525	0.62985	0.00030504	-0.00043753	-2.119E-07	484.30612284984653	29.245	0.26065	29.248	29.166	29.427	0.0031357					10	6	2	0	0	0	0.027866	1	1772	1772		23.042	0	1	140130			67368	10947	47354	47423	72980	72980					0.11281459296708363
RLRLRLLS	8	Unmodified	_RLRLRLLS_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8246459960938	2	513.848368	1025.68218	-1.1042	-0.00056737	-2.4253	-0.0012463	-3.5295	-0.0018136	513.8470065665988	39.628	0.20985	39.516	39.467	39.677	-0.11223					8	5	2	0	0	0	0.027866	1	3417	3417		29.15	0	1	50735	+		67369	28689	47355	47424	72981	72981					0.17036829833318734
RLRLVANPYGE	11	Unmodified	_RLRLVANPYGE_					0	0	0			REV__ENSG00000107518|ENST00000355044|ATRNL1	REV__ENSG00000107518|ENST00000355044|ATRNL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.2768249511719	3	429.910449	1286.70952	-0.020046	-8.6178E-06	-0.74438	-0.00032002	-0.76443	-0.00032864	429.9101937349911	49.776	0.29606	49.776	49.582	49.878	0					9	7	2	0	0	0	0.024801	1	5134	5134		23.378	10.42	1	100530	+		67370	21669	47356	47425	72982	72982					0.07763268583039462
RLRLVVSH	8	Unmodified	_RLRLVVSH_					0	0	0		ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	ENSG00000133247|ENST00000255613|KMT5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.324951171875	2	490.311618	978.608683	4.26	0.0020887	-4.1153	-0.0020178	0.14466	7.0927E-05	490.309445121599	17.944	0.59419	17.702	17.33	17.924	-0.24256					19	11	2	0	0	0	0.027866	1	207	207		20.482	2.1574	1	63776			67371	4696	47357	47426	72983	72983					0.11852281390849839
RLRPLLSTA	9	Unmodified	_RLRPLLSTA_					0	0	0			REV__ENSG00000103932|ENST00000304330|RPAP1	REV__ENSG00000103932|ENST00000304330|RPAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8246459960938	2	513.824558	1025.63456	-1.07	-0.00054978	0.6728	0.0003457	-0.39717	-0.00020408	513.8250496412749	39.615	0.83077	39.509	39.191	40.022	-0.10654					81	22	5	0	0	0	0.96322	1	3417	3417		27.882	1.0861	1	10422000	+		67372	21407	47358	47427	72984	72984					0.12277130842471706
RLRPPGQP	8	Unmodified	_RLRPPGQP_					0	0	0		ENST00000358055.7_2_2:220492239-220492678:+|nuORF	ENST00000358055.7_2_2:220492239-220492678:+|nuORF	ENST00000358055.7_2_2:220492239-220492678:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.2605285644531	2	460.774868	919.535184	-0.59754	-0.00027533	0.36784	0.00016949	-0.2297	-0.00010584	460.7749916166623	29.307	0.4716	29.134	28.893	29.365	-0.17258					15	10	2	0	0	0	0.027866	1	1777	1777		19.36	0	1	106430			67373	12708	47359	47428	72985	72985					0.07219732948362889
RLRPRAGGL	9	Unmodified	_RLRPRAGGL_					0	0	0		ENSG00000112294|ENST00000357578|ALDH5A1;nc|ENSG00000112294|P51649-2|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	ENSG00000112294|ENST00000357578|ALDH5A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.31781005859375	2	498.314692	994.614831	0.038749	1.9309E-05	3.1369	0.0015632	3.1757	0.0015825	498.31612000077445	79.178	1.1556	79.197	78.946	80.101	0.018677					65	27	3	0	0	0	0.26797	1	9737	9737		79.939	5.9645	1	1225300			67374	3195	47360	47429	72986	72986					0.11730799622375798
RLRPREAE	8	Unmodified	_RLRPREAE_					0	0	0		ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8247680664062	2	513.793789	1025.57303	-1.1855	-0.00060913	-4.0239	-0.0020675	-5.2095	-0.0026766	513.7904257127354	39.788	0.38023	39.811	39.598	39.978	0.023727					14	10	2	0	0	0	0.027866	1	3419	3419		40.778	15.204	1	123170			67375	11376	47361	47430	72987	72987					0.061261991431820206
RLRPREAE	8	Unmodified	_RLRPREAE_					0	0	0		ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.793789	1025.57303	-0.41637	-0.00021393	-9.5368	-0.0048999	-9.9531	-0.0051139	513.7890115117482	39.957	0.87285	39.807	39.205	40.078	-0.1497	-0.046919	-0.00071872	NaN	40.778	34	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346910			67376	11376	47361	47430							0.061261991431820206
RLRPREAE	8	Unmodified	_RLRPREAE_					0	0	0		ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.793789	1025.57303	-0.58866	-0.00030245	-9.6673	-0.004967	-10.256	-0.0052694	513.7891285874314	40.174	0.88395	39.944	39.313	40.197	-0.2302	0.089762	-0.00085281	NaN	40.778	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339440			67377	11376	47361	47430							0.061261991431820206
RLRQGLLA	8	Unmodified	_RLRQGLLA_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4|HDAC7	REV__nc|ENSG00000061273|Q8WUI4|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.79840087890625	2	463.798343	925.582134	-0.23124	-0.00010725	0.47863	0.00022199	0.24739	0.00011474	463.7984155089555	41.773	0.96626	41.641	41.352	42.319	-0.13219					65	27	4	0	0	0	1.0133	1	3755	3755		35.201	0	1	2466000	+		67378	20256	47362	47431	72988	72988					0.1163659249950797
RLRQGPRS	8	Unmodified	_RLRQGPRS_					0	0	0		ENST00000494443.5_1_X:153608322-153608766:+|nuORF;ENST00000486738.5_1_X:153608322-153609415:+|nuORF	ENST00000494443.5_1_X:153608322-153608766:+|nuORF	ENST00000494443.5_1_X:153608322-153608766:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2884216308594	2	485.288674	968.562795	3.2593	0.0015817	-4.0646	-0.0019725	-0.80529	-0.0003908	485.28684316422704	17.869	2.0137	17.869	17.449	19.463	0					85	40	5	0	0	0	0.96719	1	233	233		42.474	1.9018	1	6870700			67379	15351	47363	47432	72989	72989					0.07725636208613196
RLRQIEVL	8	Unmodified	_RLRQIEVL_					0	0	0			REV__nc|ENSG00000105443|Q99418|CYTH2	REV__nc|ENSG00000105443|Q99418|CYTH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.82568359375	2	513.824558	1025.63456	-1.1869	-0.00060988	0.74861	0.00038465	-0.43833	-0.00022522	513.825017437267	39.844	1.2054	39.868	39.526	40.731	0.023727					88	33	5	0	0	0	1.0009	1	3445	3445		37.159	0	1	11651000	+		67380	36542	47364	47433	72990	72990					0.12277130842471706
RLRQLELT	8	Unmodified	_RLRQLELT_					0	0	0			REV__ENSG00000069424|ENST00000378083|KCNAB2	REV__ENSG00000069424|ENST00000378083|KCNAB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.27734375	2	514.81419	1027.61383	-0.057549	-2.9627E-05	-0.32986	-0.00016982	-0.38741	-0.00019944	514.8139753443834	45.747	0.53753	45.65	45.461	45.999	-0.096649					22	14	2	0	0	0	0.027866	1	4406	4406		20.482	0	1	296920	+		67381	20401	47365	47434	72991	72991					0.1011254046279646
RLRQLELT	8	Unmodified	_RLRQLELT_					0	0	0			REV__ENSG00000069424|ENST00000378083|KCNAB2	REV__ENSG00000069424|ENST00000378083|KCNAB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.81419	1027.61383	-0.22352	-0.00011507	-0.14275	-7.3488E-05	-0.36627	-0.00018856	514.8140639392133	45.971	0.52067	45.709	45.486	46.006	-0.26118	0.020169	-0.00015556	NaN	13.775	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326160	+		67382	20401	47365	47434							0.1011254046279646
RLRQLELT	8	Unmodified	_RLRQLELT_					0	0	0			REV__ENSG00000069424|ENST00000378083|KCNAB2	REV__ENSG00000069424|ENST00000378083|KCNAB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.81419	1027.61383	-0.81867	-0.00042146	1.0092	0.00051957	0.19057	9.8106E-05	514.8140776715983	45.91	0.46761	45.708	45.425	45.892	-0.20226	0.018574	0.0010306	NaN	13.775	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242230	+		67383	20401	47365	47434							0.1011254046279646
RLRQWRPAR	9	Unmodified	_RLRQWRPAR_					0	0	0			REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.868896484375	2	619.870697	1237.72684	0.088081	5.4599E-05	-1.5657	-0.00097051	-1.4776	-0.00091591	619.8693858580326	97.1	1.0703	96.976	96.661	97.732	-0.12368					46	23	3	0	0	0	0.98128	1	12036	12036		24.203	0.68005	1	190550	+		67384	34345	47366	47435	72992	72992					0.11748653699328315
RLRQWRPAR	9	Unmodified	_RLRQWRPAR_					0	0	0			REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	619.870697	1237.72684	-0.5993	-0.00037149	-1.1392	-0.00070613	-1.7385	-0.0010776	619.8697241480468	96.954	1.1483	96.954	96.356	97.504	0	0.020245	0.00094242	NaN	24.203	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152070	+		67385	34345	47366	47435							0.11748653699328315
RLRQWRPAR	9	Unmodified	_RLRQWRPAR_					0	0	0			REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	619.870697	1237.72684	0.74102	0.00045934	-2.5814	-0.0016001	-1.8404	-0.0011408	619.8688055996852	96.868	0.84203	96.877	96.663	97.505	0.0089111	-0.057095	-0.00084559	NaN	24.203	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160190	+		67386	34345	47366	47435							0.11748653699328315
RLRQWRPAR	9	Unmodified	_RLRQWRPAR_					0	0	0			REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	619.870697	1237.72684	0.31943	0.00019801	-2.1143	-0.0013106	-1.7949	-0.0011126	619.8691220171825	96.979	0.88821	96.979	96.749	97.637	-3.0518E-05	0.045159	-0.00026649	NaN	24.203	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153180	+		67387	34345	47366	47435							0.11748653699328315
RLRQWRPAR	9	Unmodified	_RLRQWRPAR_					0	0	0			REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	619.870697	1237.72684	0.73777	0.00045732	-2.4877	-0.001542	-1.7499	-0.0010847	619.8689487340973	96.942	1.1262	96.805	96.568	97.694	-0.1367	-0.12874	-0.0007294	NaN	24.203	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305320	+		67388	34345	47366	47435							0.11748653699328315
RLRRATEY	8	Unmodified	_RLRRATEY_					0	0	0		ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	ENSG00000102738|ENST00000323563|MRPS31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3161010742188	2	532.801614	1063.58868	-0.8398	-0.00044745	-3.6259	-0.0019319	-4.4657	-0.0023793	533.3008333970579	21.938	0.14518	21.736	21.663	21.808	-0.20199					4	2	2	0	0	0	0.027866	1	707	707		37.159	0	1	8579.3			67389	2422	47367	47436	72993	72993					0.059424856602163345
RLRRIGKL	8	Unmodified	_RLRRIGKL_					0	0	0			REV__ENST00000554003.1_1_12:57638697-57638930:-|nuORF	REV__ENST00000554003.1_1_12:57638697-57638930:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.31951904296875	2	506.348535	1010.68252	0.099793	5.053E-05	1.4615	0.00074001	1.5613	0.00079054	506.34909015240174	52.798	0.69457	52.89	52.602	53.297	0.091942					44	18	4	0	0	0	0.027866	1	5634	5634		50.025	2.1089	1	1293200	+		67390	34978	47368	47437	72994	72994					0.17760249553168705
RLRRPGPPGG	10	Unmodified	_RLRRPGPPGG_					0	0	0			REV__ENST00000358055.7_2_2:220492239-220492678:+|nuORF	REV__ENST00000358055.7_2_2:220492239-220492678:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.817138671875	2	531.817599	1061.62064	0.30294	0.00016111	-2.0038	-0.0010657	-1.7009	-0.00090455	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	1.1267	1	10831	10831		29.15	3.6994	1	3405600	+		67391	30846	47369	47438	72995	72995					0.09229898134049108
RLRRQVSVLQW	11	Unmodified	_RLRRQVSVLQW_					0	0	0		nc|ENSG00000134440|O43776-2|NARS1	nc|ENSG00000134440|O43776-2|NARS1	nc|ENSG00000134440|O43776-2|NARS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.9548645019531	3	480.956393	1439.84735	1.1833	0.00056914	-4.2514	-0.0020448	-3.0681	-0.0014756	480.9543467869626	19.823	0.68526	19.59	19.325	20.01	-0.23345					45	13	5	0	0	0	1.0592	1	439	439		22.562	4.0305	1	428510			67392	18287	47370	47439	72996	72996					0.14502016902315518
RLRRSRLRRAH	11	Unmodified	_RLRRSRLRRAH_					0	0	0			REV__ENST00000457303.3_1_4:184425339-184425477:-|nuORF	REV__ENST00000457303.3_1_4:184425339-184425477:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7972412109375	3	492.978414	1475.91341	-0.49279	-0.00024293	-0.5498	-0.00027104	-1.0426	-0.00051397	492.9780917538366	51.555	1.0854	51.407	50.972	52.057	-0.14735					38	30	2	0	0	0	0.024851	1	5385	5385		14.086	0	1	109790	+		67393	32803	47371	47440	72997	72997					0.19449270587710998
RLRRWKLWQWW	11	Unmodified	_RLRRWKLWQWW_					0	0	0			REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF	REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.7386169433594	4	429.245481	1712.95282	0.013329	5.7214E-06	-3.8737	-0.0016628	-3.8604	-0.001657	429.2446964880378	39.946	0.18608	39.715	39.585	39.771	-0.23021					6	4	2	0	0	0	0.024901	1	3383	3383		1.523	0.10423	1	50053	+		67394	34924	47372	47441	72998	72998					0.12485977818573701
RLRSKQQSL	9	Unmodified	_RLRSKQQSL_					0	0	0		nc|ENSG00000213347|Q9BW11-4|MXD3;ENST00000509339.1_1_5:176730316-176735034:-|nuORF;ENST00000503473.5_1_5:176730316-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-3|MXD3;ENST00000503782.1_1_5:176734591-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3353271484375	2	558.335821	1114.65709	0.22028	0.00012299	-0.8056	-0.00044979	-0.58531	-0.0003268	558.335436203206	19.419	0.74025	19.258	19.034	19.774	-0.16079					25	14	2	0	0	0	0.51687	1	416	416		58.23	3.4536	1	1619300			67395	18708	47373	47442	72999	72999					0.1043473024008108
RLRSRGPA	8	Unmodified	_RLRSRGPA_					0	0	0		ENST00000585606.5_1_19:14589230-14590349:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1;ENSG00000123159|ENST00000393033|GIPC1	REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7779541015625	2	456.777942	911.541332	3.7871	0.0017299	-3.7792	-0.0017263	0.0079333	3.6237E-06	456.77623703867556	18.756	0.44199	18.82	18.649	19.091	0.063307					11	8	2	0	0	0	1.0338	1	296	296		31.955	0	1	55778			67396	29537	47374	47443	73000	73000					0.08202251179886844
RLRTGPGQV	9	Unmodified	_RLRTGPGQV_					0	0	0		ENST00000595946.1_3_19:46283105-46288963:-|nuORF;ENST00000291270.8_1_19:46283105-46285629:-|nuORF;ENST00000596586.5_3_19:46283105-46288963:-|nuORF	ENST00000595946.1_3_19:46283105-46288963:-|nuORF	ENST00000595946.1_3_19:46283105-46288963:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2908935546875	2	492.290882	982.567212	1.086	0.00053464	-1.2923	-0.00063619	-0.20629	-0.00010155	492.29015047205445	20.371	0.98469	20.44	20.021	21.005	0.068901					40	19	4	0	0	0	0.62163	1	504	504		51.335	1.8939	1	681090			67397	11794	47375	47444	73001	73001					0.07523100631510715
RLRTHTSL	8	Unmodified	_RLRTHTSL_					0	0	0		ENST00000338488.8_1_9:102584140-102584350:+|nuORF	ENST00000338488.8_1_9:102584140-102584350:+|nuORF	ENST00000338488.8_1_9:102584140-102584350:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2908630371094	2	492.290882	982.567212	-0.65666	-0.00032327	0.25778	0.0001269	-0.39888	-0.00019637	492.29093482962963	20.299	1.0193	20.299	19.782	20.801	0					38	20	4	0	0	0	0.81662	1	510	510		57.811	2.3071	1	680660			67398	12439	47376	47445	73002	73002					0.07523100631499346
RLRTLASH	8	Unmodified	_RLRTLASH_					0	0	0			REV__ENSG00000105397|ENST00000525621|TYK2	REV__ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.3157958984375	2	477.2856	952.556647	1.4658	0.00069961	-2.4191	-0.0011546	-0.95325	-0.00045497	477.2862442805893	65.863	0.38396	65.863	65.681	66.065	0					12	9	2	0	0	0	0.027866	1	7824	7824		29.15	16.943	1	72226	+		67399	21523	47377	47446	73003	73003					0.07847117977075868
RLRTPGILT	9	Unmodified	_RLRTPGILT_					0	0	0			REV__nc|ENSG851|Q9QC07|ERVK-18_pol	REV__nc|ENSG851|Q9QC07|ERVK-18_pol	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.82470703125	2	513.824558	1025.63456	0.021992	1.13E-05	-0.32062	-0.00016474	-0.29863	-0.00015344	513.8245595828838	39.531	0.87872	39.531	39.183	40.062	0					70	24	4	0	0	0	0.96322	1	3398	3398		27.882	0	1	12095000	+		67400	37252	47378	47447	73004	73004					0.12277130842448969
RLRTPQGI	8	Unmodified	_RLRTPQGI_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.78814697265625	2	470.787976	939.561398	-0.40234	-0.00018942	-0.52319	-0.00024631	-0.92554	-0.00043573	470.78778156790446	23.768	0.82284	23.707	23.428	24.251	-0.06086					59	18	5	0	0	0	0.77775	1	987	987		60.972	4.2509	1	12702000	+		67401	28275	47379	47448	73005	73005					0.0892000211983941
RLRVLEAETQ	10	Unmodified	_RLRVLEAETQ_					0	0	0		nc|ENSG00000171148|O75528-2|TADA3;ENSG00000171148|ENST00000301964|TADA3	nc|ENSG00000171148|O75528-2|TADA3	nc|ENSG00000171148|O75528-2|TADA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.2171325683594	3	405.566571	1213.67788	0.10261	4.1614E-05	0.085476	3.4666E-05	0.18808	7.628E-05	405.56689588860144	22.465	0.5175	22.263	21.951	22.468	-0.20199					17	10	3	0	0	0	0.03519	1	745	745		16.53	0	1	158480			67402	8118	47380	47449	73006	73006					0.0795927582908007
RLRVSHSL	8	Unmodified	_RLRVSHSL_					0	0	0		ENST00000552075.5_1_12:62652592-62653819:-|nuORF	ENST00000552075.5_1_12:62652592-62653819:-|nuORF	ENST00000552075.5_1_12:62652592-62653819:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7782287597656	2	484.293425	966.572297	-0.62847	-0.00030437	1.0316	0.00049962	0.40317	0.00019525	484.29364493781816	29.306	0.82038	29.309	29.055	29.875	0.0031376					31	20	2	0	0	0	0.027866	1	1772	1772		27.882	0	1	622460			67403	16615	47381	47450	73007	73007					0.08767404494130915
RLRYVLHA	8	Unmodified	_RLRYVLHA_					0	0	0			REV__nc|ENSG00000121577|Q9HBU9|POPDC2	REV__nc|ENSG00000121577|Q9HBU9|POPDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3235473632812	2	514.311618	1026.60868	1.6266	0.0008366	-2.4198	-0.0012445	-0.79319	-0.00040795	514.3102983365409	74.219	0.63589	74.219	73.999	74.635	0					20	14	2	0	0	0	0.027866	1	9061	9061		29.842	6.7991	1	202560	+		67404	36616	47382	47451	73008	73008					0.0964428139084248
RLSDFTESL	9	Unmodified	_RLSDFTESL_					0	0	0		BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2713012695312	2	534.272021	1066.52949	0.63428	0.00033888	-0.54048	-0.00028877	0.093797	5.0113E-05	534.2716004006553	59.504	0.9988	59.504	59.257	60.256	0					66	26	4	0	0	0	0.17845	1	6802	6802		93.143	8.2277	1	4904100			67405	186;187	47383	47452	73009	73009					-0.0011145514463350992
RLSDFTESL	9	Unmodified	_RLSDFTESL_					0	0	0		BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2709350585938	2	534.272021	1066.52949	-0.02291	-1.224E-05	0.018535	9.9027E-06	-0.004375	-2.3375E-06	534.2718570457647	59.72	1.1506	59.52	59.136	60.286	-0.20016					76	30	4	0	0	0	0.18994	2	6809	6797;6809		90.601	15.819	1	5340200			67406	186;187	47383	47452	73010;73011	73011					-0.0011145514463350992
RLSDFTESL	9	Unmodified	_RLSDFTESL_					0	0	0		BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2713623046875	2	534.272021	1066.52949	-0.3179	-0.00016985	0.34447	0.00018404	0.026569	1.4195E-05	534.2720119327935	59.394	1.004	59.48	59.206	60.21	0.085682					69	26	4	0	0	0	0.16638	1	6710	6710		95.815	5.4453	1	4563300			67407	186;187	47383	47452	73012	73012					-0.0011145514463350992
RLSDFTESL	9	Unmodified	_RLSDFTESL_					0	0	0		BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.272021	1066.52949	1.0002	0.0005344	4.3509	0.0023245	5.3511	0.0028589	534.275011018621	59.818	0.3504	59.62	59.339	59.689	-0.19742	0.091184	0.0047158	NaN	95.815	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199230			67408	186;187	47383	47452							-0.0011145514463350992
RLSDFTESL	9	Unmodified	_RLSDFTESL_					0	0	0		BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion;nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST;BIRC6-SPAST|2|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.272021	1066.52949	-0.36393	-0.00019444	1.0105	0.00053988	0.64657	0.00034545	534.2722904456672	59.77	0.3821	59.521	59.417	59.8	-0.24842	-0.0077787	0.0011465	NaN	95.815	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101320			67409	186;187	47383	47452							-0.0011145514463350992
RLSDLSEQL	9	Unmodified	_RLSDLSEQL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.785400390625	2	530.785296	1059.55604	-0.14922	-7.9202E-05	0.281	0.00014915	0.13178	6.9947E-05	530.7853499026376	52.841	0.89944	52.934	52.364	53.263	0.09314					58	23	4	0	0	0	0.071379	1	5609	5609		120.87	5.3744	1	6498300			67410	4266	47384	47453	73013	73013					0.02864233746709033
RLSDNTPEHY	10	Unmodified	_RLSDNTPEHY_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	616.2603759765625	2	616.288734	1230.56291	-0.38283	-0.00023593	4.2739	0.002634	3.8911	0.002398	616.2910118388859	56.373	0.15716	56.157	56.078	56.236	-0.21607					5	3	2	0	0	0	0.03519	1	6096	6096		23.523	13.419	1	37166			67411	2849	47385	47454	73014	73014					-0.0431445337273999
RLSDSENEEPS	11	Unmodified	_RLSDSENEEPS_					0	0	0		ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.5205078125	3	421.521356	1261.54224	-0.1372	-5.7834E-05	-1.5389	-0.00064867	-1.6761	-0.00070651	421.5205915883727	31.785	0.98438	31.627	31.3	32.284	-0.15772					58	23	4	0	0	0	1.0259	1	2125	2125		31.068	1.5174	1	1377500			67412	7560	47386	47455	73015	73015					-0.07807088543063401
RLSEAIVTV	9	Unmodified	_RLSEAIVTV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.29522705078125	2	494.295299	986.576045	-0.70862	-0.00035027	0.577	0.00028521	-0.13162	-6.506E-05	494.2955265778733	53.287	0.54632	53.14	52.873	53.42	-0.14723					55	14	5	0	0	0	0.40693	1	5722	5722		65.465	7.2355	1	5214300			67413	6756	47387	47456	73016	73016					0.08222029477326487
RLSEAIVTV	9	Unmodified	_RLSEAIVTV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.29498291015625	2	494.295299	986.576045	-0.289	-0.00014285	0.16294	8.0542E-05	-0.12606	-6.231E-05	494.29528874464165	53.06	0.61278	53.156	52.906	53.518	0.095669					51	16	4	0	0	0	0.34489	1	5642	5642		69.628	9.5094	1	5392700			67414	6756	47387	47456	73017	73017					0.08222029477326487
RLSEFIPAVF	10	Unmodified	_RLSEFIPAVF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.7776489257812	2	589.832049	1177.64954	-0.15481	-9.1312E-05	-0.065487	-3.8626E-05	-0.2203	-0.00012994	589.8317968818964	80.949	1.9583	80.973	80.656	82.614	0.023903					124	47	4	0	0	0	0.03519	1	9986	9986		41.427	14.734	1	1021300			67415	7350	47388	47457	73018	73018					0.06782577919784671
RLSEGFSI	8	Unmodified	_RLSEGFSI_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.744873046875	2	454.745442	907.476331	0.28101	0.00012779	-0.10804	-4.9132E-05	0.17297	7.8656E-05	454.7453306472603	54.093	1.0312	54.093	53.726	54.757	0					75	29	4	0	0	0	0.5947	2	5891	5891;5903		76.774	0	1	3243200			67416	831	47389	47458	73019;73020	73019					0.018892118633857535
RLSEGFSI	8	Unmodified	_RLSEGFSI_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7459411621094	2	454.745442	907.476331	0.30251	0.00013757	-0.091712	-4.1705E-05	0.2108	9.586E-05	454.74531484085605	53.856	1.2105	53.954	53.558	54.769	0.097736					84	34	4	0	0	0	0.50717	1	5792	5792		84.916	0	1	3227100			67417	831	47389	47458	73021	73021					0.018892118633857535
RLSEVQASL	9	Unmodified	_RLSEVQASL_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.78173828125	2	501.782556	1001.55056	-0.3627	-0.00018199	0.93885	0.0004711	0.57615	0.0002891	501.78311422641656	45.207	1.2281	45.207	44.758	45.986	0					95	35	4	0	0	0	0.51687	1	4396	4396		58.23	6.8945	1	7121700			67418	15001	47390	47459	73022	73022					0.04984554954910436
RLSGAPYT	8	Unmodified	_RLSGAPYT_					0	0	0		ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.732177734375	2	432.732335	863.450116	0.94554	0.00040916	-2.2002	-0.00095211	-1.2547	-0.00054294	432.7313165592402	98.51	1.8019	98.507	97.893	99.695	-0.0026855					100	41	3	0	0	0	1.0574	1	12495	12495		26.796	1.3459	1	3032200			67419	12812	47391	47460	73023	73023					0.01292942691884491
RLSGAPYT	8	Unmodified	_RLSGAPYT_					0	0	0		ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7313232421875	2	432.732335	863.450116	0.0043559	1.8849E-06	-1.3877	-0.0006005	-1.3833	-0.00059862	432.7317806040935	95.01	1.4307	94.873	94.463	95.894	-0.13689					62	32	2	0	0	0	1.0338	1	11729	11729		31.955	0	1	184250			67420	12812	47391	47460	73024	73024					0.01292942691884491
RLSGAPYT	8	Unmodified	_RLSGAPYT_					0	0	0		ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7317199707031	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	0.87148	1	12316	12316		53.351	12.779	1	2327700			67421	12812	47391	47460	73025	73025					0.01292942691884491
RLSGAPYT	8	Unmodified	_RLSGAPYT_					0	0	0		ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.73175048828125	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	1.043	1	12297	12297		30.504	0	1	1517800			67422	12812	47391	47460	73026	73026					0.01292942691884491
RLSGAPYT	8	Unmodified	_RLSGAPYT_					0	0	0		ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	432.732335	863.450116	0.73207	0.00031679	-2.4612	-0.001065	-1.7291	-0.00074824	432.7315924362259	95.136	1.3463	95.014	94.51	95.856	-0.12251	0.036068	-0.00075928	NaN	31.955	49	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101270			67423	12812	47391	47460							0.01292942691884491
RLSGAPYT	8	Unmodified	_RLSGAPYT_					0	0	0		ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	ENST00000361981.7_1_X:153127353-153127806:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	432.732335	863.450116	0.14982	6.4831E-05	-1.5118	-0.00065419	-1.362	-0.00058936	432.7317750535246	95.198	1.2171	95.047	94.667	95.885	-0.15186	0.068805	6.2392E-05	NaN	31.955	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97353			67424	12812	47391	47460							0.01292942691884491
RLSGDVLNPW	10	Unmodified	_RLSGDVLNPW_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.23193359375	2	578.809105	1155.60366	-1.0868	-0.00062905	0.17192	9.9511E-05	-0.91488	-0.00052954	578.8091987926075	39.094	0.68188	39.118	38.844	39.526	0.023727					35	18	3	0	0	0	0.03519	1	3266	3266		36.447	11.928	1	391310			67425	4023	47392	47461	73027	73027					0.03207932737541341
RLSGLQVEW	9	Unmodified	_RLSGLQVEW_					0	0	0			REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF;REV__ENST00000513166.1_1_5:176514597-176516637:+|nuORF	REV__ENST00000292408.8_1_5:176513967-176516637:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.2989501953125	2	544.298373	1086.58219	-1.3574	-0.00073883	0.78309	0.00042623	-0.57432	-0.0003126	544.29893751033	53.812	0.62798	53.676	53.393	54.021	-0.13617					53	19	4	0	0	0	0.42604	1	5653	5653		64.207	0	1	8732400	+		67426	29950;34148	47393	47462	73028	73028					0.042365477088424086
RLSKEPHVK	9	Unmodified	_RLSKEPHVK_					0	0	0			REV__nc|ENSG00000164109|Q13257-2|MAD2L1	REV__nc|ENSG00000164109|Q13257-2|MAD2L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2763061523438	2	547.327465	1092.64038	-0.61539	-0.00033682	0.29818	0.0001632	-0.31722	-0.00017362	547.3275111014715	29.216	0.59178	29.066	28.826	29.418	-0.14952					39	13	4	0	0	0	0.024495	1	1729	1729		34.173	7.4796	1	811510	+		67427	36861	47394	47463	73029	73029					0.0977622935411091
RLSKIKSHL	9	Unmodified	_RLSKIKSHL_					0	0	0			REV__sp|P03213|PORTL_EBVB9PortalproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF1PE=1SV=1	REV__sp|P03213|PORTL_EBVB9PortalproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BBRF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8052368164062	2	541.345658	1080.67676	-1.0355	-0.00056058	0.49549	0.00026823	-0.54004	-0.00029235	541.3458708882017	53.125	0.84811	52.978	52.645	53.493	-0.14723					40	22	3	0	0	0	0.024427	1	5660	5660		42.396	8.2236	1	908820	+		67428	37541	47395	47464	73030	73030					0.139651062508392
RLSLAPSRW	9	Unmodified	_RLSLAPSRW_					0	0	0			REV__ENST00000545054.6_1_14:24563583-24563937:+|nuORF	REV__ENST00000545054.6_1_14:24563583-24563937:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7947387695312	2	543.314358	1084.61416	-0.35144	-0.00019094	2.1821	0.0011855	1.8306	0.0009946	543.3155219061699	40.193	0.84941	40.193	39.915	40.764	0					32	23	2	0	0	0	0.024374	1	3491	3491		32.812	6.1195	1	719200	+		67429	34816	47396	47465	73031	73031					0.07523960182675182
RLSLLPPRSG	10	Unmodified	_RLSLLPPRSG_					0	0	0		ENST00000574576.2_1_16:67968465-67968768:-|nuORF	ENST00000574576.2_1_16:67968465-67968768:-|nuORF	ENST00000574576.2_1_16:67968465-67968768:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3348388671875	2	548.33529	1094.65603	-1.7288	-0.00094794	1.0269	0.00056308	-0.70187	-0.00038486	548.3357848818079	29.551	0.67551	29.551	29.26	29.936	0					49	16	4	0	0	0	0.75651	1	1832	1832		63.534	1.4264	1	1503200			67430	17088	47397	47466	73032	73032					0.11248515871147902
RLSLPSSKAK	10	Unmodified	_RLSLPSSKAK_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.8352661132812	2	543.835123	1085.65569	0.13967	7.5958E-05	-0.56241	-0.00030586	-0.42274	-0.0002299	543.83474092561	19.17	0.69229	19.009	18.787	19.48	-0.16079					35	13	4	0	0	0	1.0909	1	403	403		33.922	3.6039	1	728190			67431	3981	47398	47467	73033	73033					0.11629096151295926
RLSPPECL	8	Unmodified	_RLSPPECL_					0	0	0		ENSG00000087510|ENST00000201031|TFAP2C;TFAP2E|p.A253T|1|0.28|ENSG00000116819|chr1:35588524-35588524|G/A|missense_variant;nc|ENSG00000087510|Q92754-2|TFAP2C;TFAP2D|p.F304Lfs*14|1|0.22|ENSG00000008197|chr6:50745132-50745132|T/-|frameshift_variant;nc|ENSG00000137203|P05549-2|TFAP2A;nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A;ENSG00000116819|ENST00000373235|TFAP2E;ENSG00000008197|ENST00000008391|TFAP2D;ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B	ENSG00000087510|ENST00000201031|TFAP2C;ENSG00000116819|ENST00000373235|TFAP2E;ENSG00000008197|ENST00000008391|TFAP2D;ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000116819|ENST00000373235|TFAP2E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2196044921875	2	457.741845	913.469137	-1.0591	-0.00048477	0.4841	0.00022159	-0.57495	-0.00026318	457.7423771060369	40.425	0.51648	40.195	39.968	40.485	-0.23021					31	13	3	0	0	0	0.027866	1	3456	3456		25.45	8.0852	1	854790			67432	1853;3581;837;836	47399	47468	73034	73034					0.008941559912841512
RLSPVSPAL	9	Unmodified	_RLSPVSPAL_					0	0	0		ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	ENST00000567039.1_1_15:43620629-43622752:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2841796875	2	470.284734	938.554916	0.0042196	1.9844E-06	-0.25544	-0.00012013	-0.25122	-0.00011815	470.28431006075874	51.137	0.91824	50.988	50.657	51.575	-0.14916					51	25	3	0	0	0	0.45795	1	5375	5375		62.107	8.756	1	2404100			67433	7866	47400	47469	73035	73035					0.08318064168463479
RLSQEAWVW	9	Unmodified	_RLSQEAWVW_					0	0	0		ENST00000175756.9_1_2:131132254-131132749:+|nuORF	ENST00000175756.9_1_2:131132254-131132749:+|nuORF	ENST00000175756.9_1_2:131132254-131132749:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.2704467773438	2	587.803823	1173.59309	-0.64293	-0.00037792	-1.8608	-0.0010938	-2.5037	-0.0014717	588.3037703817165	60.931	0.75492	60.725	60.295	61.05	-0.20599					37	18	3	0	0	0	0.024541	1	6770	6770		31.955	11.958	1	123120			67434	11118	47401	47470	73036	73036					0.013239500831332407
RLSQSSPE	8	Unmodified	_RLSQSSPE_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.25372314453125	2	452.230156	902.445759	-0.74255	-0.00033581	0.63696	0.00028805	-0.10559	-4.7753E-05	452.2303468997889	20.406	0.38093	20.406	20.323	20.704	0					13	7	3	0	0	0	0.027866	1	545	545		42.396	5.237	1	34378	+		67435	22113	47402	47471	73037	73037					-0.009365665216591879
RLSRGPAR	8	Unmodified	_RLSRGPAR_					0	0	0			REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.77197265625	2	456.777942	911.541332	0.4044	0.00018472	-0.33167	-0.0001515	0.072734	3.3224E-05	456.7777027907517	18.216	0.44318	18.084	17.908	18.352	-0.13147					18	8	3	0	0	0	0.99042	1	257	257		38.806	3.1879	1	124370	+		67436	32748	47403	47472	73038	73038					0.08202251179886844
RLSRGPAR	8	Unmodified	_RLSRGPAR_					0	0	0			REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	456.777942	911.541332	3.5401	0.0016171	-3.363	-0.0015362	0.1771	8.0897E-05	456.77626768088913	18.062	0.48887	18.062	17.844	18.333	0	-0.010831	-0.0015484	NaN	38.806	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124570	+		67437	32748	47403	47472							0.08202251179886844
RLSRGPAR	8	Unmodified	_RLSRGPAR_					0	0	0			REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	REV__ENST00000453291.1_1_9:123550442-123555530:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	456.777942	911.541332	0.4044	0.00018472	-0.33167	-0.0001515	0.072734	3.3224E-05	456.7777027907517	18.216	0.44318	18.084	17.908	18.352	-0.13147	0.010831	0.001221	NaN	38.806	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124370	+		67438	32748	47403	47472							0.08202251179886844
RLSRPELSAG	10	Unmodified	_RLSRPELSAG_					0	0	0			REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.3064575195312	2	543.306729	1084.59891	-1.2076	-0.0006561	1.2655	0.00068757	0.057916	3.1466E-05	543.307232260166	36.483	0.76794	36.521	36.234	37.002	0.038044					55	20	5	0	0	0	0.96069	1	2846	2846		50.034	0.49747	1	2713700	+		67439	37007	47404	47473	73039	73039					0.059990485947992056
RLSRVSPV	8	Unmodified	_RLSRVSPV_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.282470703125	2	457.282526	912.550499	-0.11737	-5.3669E-05	-0.39073	-0.00017868	-0.5081	-0.00023235	457.2823220451727	34.819	1.2079	34.819	34.479	35.687	0					65	31	4	0	0	0	1.0516	1	2647	2647		29.15	6.1071	1	8636700	+		67440	29038	47405	47474	73040	73040					0.09072599745559273
RLSTTLIQN	9	Unmodified	_RLSTTLIQN_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3040161132812	2	523.303655	1044.59276	0.13302	6.9608E-05	-1.6088	-0.00084187	-1.4758	-0.00077227	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.6504	1	10953	10953		49.442	5.0644	1	10615000	+		67441	27033	47406	47475	73041	73041					0.07224530363305348
RLSTTLIQN	9	Unmodified	_RLSTTLIQN_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2982788085938	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.077175	1	10846	10846		118.74	5.3315	1	11897000	+		67442	27033	47406	47475	73042	73042					0.07224530363305348
RLSTTLIQN	9	Unmodified	_RLSTTLIQN_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3025512695312	2	523.303655	1044.59276	-0.39587	-0.00020716	-0.06527	-3.4156E-05	-0.46114	-0.00024131	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.12602	4	10543	10531;10543;10555;10567		104.75	16.992	1	14072000	+		67443	27033	47406	47475	73043;73044;73045;73046	73044					0.07224530363305348
RLSTTLIQN	9	Unmodified	_RLSTTLIQN_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	523.303655	1044.59276	0.47324	0.00024765	-0.96385	-0.00050438	-0.49061	-0.00025674	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.32811	2	10575	10575;10587		71.877	7.6702	1	13836000	+		67444	27033	47406	47475	73047;73048	73047					0.07224530363305348
RLSTTLIQN	9	Unmodified	_RLSTTLIQN_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.2508	5	10524	10514;10524;10548;10560;10584		82.241	20.133	1	14210000	+		67445	27033	47406	47475	73049;73050;73051;73052;73053	73050					0.07224530363305348
RLSVGPPPFGG	11	Unmodified	_RLSVGPPPFGG_					0	0	0			REV__ENST00000592618.5_1_19:1009676-1010321:-|nuORF	REV__ENST00000592618.5_1_19:1009676-1010321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.299560546875	2	542.300916	1082.58728	-1.2708	-0.00068918	-0.13093	-7.1006E-05	-1.4018	-0.00076019	542.3008168915045	64.723	1.688	64.769	64.448	66.137	0.045502					85	45	2	0	0	0	0.95882	1	7584	7584		45.972	3.5761	1	21138000	+		67446	35749	47407	47476	73054	73054					0.04928851571457926
RLSVRGDT	8	Unmodified	_RLSVRGDT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2539978027344	2	452.253966	902.493378	-0.73869	-0.00033408	-0.16118	-7.2892E-05	-0.89987	-0.00040697	452.2540057058061	20.492	1.9325	20.492	20.127	22.06	0					105	39	5	0	0	0	0.87148	1	569	569		53.351	2.016	1	9243800			67447	6479	47408	47477	73055	73055					0.03823132469176471
RLTAALSPF	9	Unmodified	_RLTAALSPF_					0	0	0		ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.27496337890625	2	488.284734	974.554916	-0.93221	-0.00045519	-3.0385	-0.0014836	-3.9707	-0.0019388	488.2832493923598	21.122	0.39365	21.122	20.9	21.293	0					12	7	2	0	0	0	0.024381	1	614	614		45.952	16.802	1	80969			67448	3430	47409	47478	73056	73056					0.0666206416847217
RLTAALSPF	9	Unmodified	_RLTAALSPF_					0	0	0		ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.284734	974.554916	0.12312	6.012E-05	-4.5854	-0.002239	-4.4623	-0.0021789	488.28229688678863	21.502	0.43649	21.311	21.128	21.564	-0.19072	0.1064	-0.00098593	NaN	45.952	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59977			67449	3430	47409	47478							0.0666206416847217
RLTAAPRL	8	Unmodified	_RLTAAPRL_					0	0	0			REV__ENST00000397901.7_1_16:89712324-89712471:-|nuORF	REV__ENST00000397901.7_1_16:89712324-89712471:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.284912109375	2	449.285069	896.555585	-0.40917	-0.00018383	0.29832	0.00013403	-0.11085	-4.9801E-05	449.285071372506	34.764	1.1454	34.742	34.281	35.426	-0.021763					74	29	4	0	0	0	0.87148	1	2603	2603		53.351	2.016	1	2969900	+		67450	31789	47410	47479	73057	73057					0.10316903608168104
RLTAKQVLQH	10	Unmodified	_RLTAKQVLQH_					0	0	0		nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-3|RPS6KA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.3604736328125	2	597.359296	1192.70404	0.52306	0.00031246	-1.2859	-0.00076816	-0.76286	-0.0004557	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	1.1266	1	12249	12249		29.17	3.596	1	2779900			67451	3652	47411	47480	73058	73058					0.11539589791209437
RLTAREPKKSP	11	Unmodified	_RLTAREPKKSP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8826904296875	2	641.883136	1281.75172	0.55581	0.00035677	-1.6557	-0.0010628	-1.0999	-0.00070601	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	1.013	2	12243	12194;12243		33.922	1.4733	1	3344500			67452	6479	47412	47481	73059;73060	73060					0.12211243991396259
RLTAREPKKSP	11	Unmodified	_RLTAREPKKSP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8823852539062	2	641.883136	1281.75172	0.89146	0.00057221	-2.0214	-0.0012975	-1.1299	-0.00072529	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.61592	2	12233	12066;12233		68.846	6.0497	1	2810000			67453	6479	47412	47481	73061;73062	73062					0.12211243991396259
RLTAREPKKSP	11	Unmodified	_RLTAREPKKSP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8827514648438	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	0.96926	1	11926	11926		43.651	16.958	1	3558500			67454	6479	47412	47481	73063	73063					0.12211243991396259
RLTAREPKKSP	11	Unmodified	_RLTAREPKKSP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8825073242188	2	641.883136	1281.75172	0.76256	0.00048947	-1.8886	-0.0012122	-1.126	-0.00072277	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	0.96926	1	11950	11950		43.651	5.8393	1	3421300			67455	6479	47412	47481	73064	73064					0.12211243991396259
RLTATGILL	9	Unmodified	_RLTATGILL_					0	0	0		ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	ENSG00000101255|ENST00000217233|TRIB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2821350097656	2	479.30821	956.601866	0.56235	0.00026954	-0.28344	-0.00013585	0.27891	0.00013368	479.30780494963574	20.75	0.88654	20.554	20.088	20.975	-0.19577					49	17	4	0	0	0	0.024288	1	563	563		52.937	0	1	500060			67456	2301	47413	47482	73065	73065					0.12182923719615246
RLTCTLKVK	9	Carbamidomethyl (C)	_RLTC(Carbamidomethyl (C))TLKVK_	RLTC(1)TLKVK		RLTC(82)TLKVK		0	1	0		ENST00000508325.5_1_5:68860950-68862940:+|nuORF	ENST00000508325.5_1_5:68860950-68862940:+|nuORF	ENST00000508325.5_1_5:68860950-68862940:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.3216552734375	2	559.839351	1117.66415	0.51951	0.00029084	-2.3446	-0.0013126	-1.8251	-0.0010218	559.8368725275699	72.687	0.24481	72.405	72.262	72.506	-0.28124					7	5	2	0	0	0	0.022832	1	8810	8810		82.241	16.775	1	41944			67457	15779	47414	47483	73066	73066	209				0.11002326796278794
RLTDTDAAI	9	Unmodified	_RLTDTDAAI_					0	0	0		nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000490632.1_1_2:111406757-111408294:-|nuORF	nc|ENSG00000169679|O43683-3|BUB1	nc|ENSG00000169679|O43683-3|BUB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2586669921875	2	488.258914	974.503274	0.12582	6.1431E-05	-0.59759	-0.00029178	-0.47177	-0.00023035	488.25860898705105	41.413	1.5903	41.413	40.944	42.534	0					111	45	5	0	0	0	0.34489	2	3733	3711;3733		69.628	6.3214	1	18541000			67458	7963	47415	47484	73067;73068	73068					0.015002756838953246
RLTDTDAAI	9	Unmodified	_RLTDTDAAI_					0	0	0		nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000490632.1_1_2:111406757-111408294:-|nuORF	nc|ENSG00000169679|O43683-3|BUB1	nc|ENSG00000169679|O43683-3|BUB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2588806152344	2	488.258914	974.503274	-0.18482	-9.0238E-05	-0.37738	-0.00018426	-0.5622	-0.0002745	488.2587311374174	41.59	1.3785	41.462	41.08	42.459	-0.12857					109	39	5	0	0	0	0.27161	2	3722	3722;3746		79.451	15.244	1	17220000			67459	7963	47415	47484	73069;73070	73069					0.015002756838953246
RLTDTDAAI	9	Unmodified	_RLTDTDAAI_					0	0	0		nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000490632.1_1_2:111406757-111408294:-|nuORF	nc|ENSG00000169679|O43683-3|BUB1	nc|ENSG00000169679|O43683-3|BUB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2586669921875	2	488.258914	974.503274	-0.34126	-0.00016662	-0.23567	-0.00011507	-0.57693	-0.00028169	488.2588091580521	41.558	1.4917	41.581	41.147	42.638	0.023006					113	42	5	0	0	0	0.48817	1	3695	3695		60.118	6.7668	1	18745000			67460	7963	47415	47484	73071	73071					0.015002756838953246
RLTDYISKV	9	Unmodified	_RLTDYISKV_					0	0	0		ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.8138427734375	2	547.813856	1093.61316	-0.48444	-0.00026538	0.10924	5.9841E-05	-0.37521	-0.00020554	547.8138030784436	51.965	1.0821	51.965	51.431	52.513	0					75	29	4	0	0	0	0.26413	1	5553	5553		80.455	8.5771	1	3936900			67461	5764	47416	47485	73072	73072					0.07009701023071102
RLTDYISKV	9	Unmodified	_RLTDYISKV_					0	0	0		ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.813720703125	2	547.813856	1093.61316	-0.7435	-0.0004073	0.37008	0.00020273	-0.37342	-0.00020457	547.8139222264894	52.083	0.7644	51.936	51.642	52.406	-0.14735					66	20	5	0	0	0	0.03666	1	5543	5543		136.27	23.857	1	3918000			67462	5764	47416	47485	73073	73073					0.07009701023071102
RLTDYISKV	9	Unmodified	_RLTDYISKV_					0	0	0		ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8146362304688	2	547.813856	1093.61316	-1.5259	-0.0008359	1.0586	0.00057994	-0.46723	-0.00025595	547.8143399818101	51.828	0.98824	51.917	51.646	52.634	0.088196					69	25	5	0	0	0	0.18994	2	5468	5453;5468		90.601	10.827	1	3037400			67463	5764	47416	47485	73074;73075	73075					0.07009701023071102
RLTDYVAFL	9	Unmodified	_RLTDYVAFL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3026733398438	2	549.303124	1096.5917	-0.55003	-0.00030213	0.069523	3.8189E-05	-0.48051	-0.00026394	549.3031405933436	78.762	1.7147	78.762	78.363	80.078	0					126	40	6	0	0	0	0.31037	2	9764	9752;9764		74.255	16.292	1	13542000			67464	10157	47417	47486	73076;73077	73077					0.04726315994366814
RLTDYVAFL	9	Unmodified	_RLTDYVAFL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.302490234375	2	549.303124	1096.5917	-0.61842	-0.0003397	0.10999	6.0418E-05	-0.50843	-0.00027928	549.3031625449072	78.887	1.7112	78.695	78.298	80.009	-0.1921					129	40	6	0	0	0	0.42604	3	9741	9741;9753;9766		64.207	12.872	1	14463000			67465	10157	47417	47486	73078;73079;73080	73078					0.04726315994366814
RLTDYVAFL	9	Unmodified	_RLTDYVAFL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3026123046875	2	549.303124	1096.5917	-0.59819	-0.00032859	0.15788	8.6727E-05	-0.44031	-0.00024186	549.3031841848409	78.78	1.6602	78.798	78.441	80.101	0.018677					119	39	6	0	0	0	0.2101	2	9682	9660;9682		87.696	27.578	1	13961000			67466	10157	47417	47486	73081;73082	73082					0.04726315994366814
RLTDYVAFL	9	Unmodified	_RLTDYVAFL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.3031616210938	2	549.303124	1096.5917	-0.077562	-4.2605E-05	-0.24957	-0.00013709	-0.32714	-0.0001797	549.3029425556938	78.69	1.1852	78.534	78.297	79.482	-0.15592					53	27	4	0	0	0	0.50848	1	9380	9380		58.782	5.8453	1	1689800			67467	10157	47417	47486	73083	73083					0.04726315994366814
RLTEATSITVQ	11	Unmodified	_RLTEATSITVQ_					0	0	0			REV__ENST00000573937.5_1_17:1707859-1733034:-|nuORF	REV__ENST00000573937.5_1_17:1707859-1733034:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.24835205078125	3	406.894465	1217.66157	1.3533	0.00055065	-3.2886	-0.0013381	-1.9353	-0.00078745	406.89470555478925	87.761	1.062	87.761	87.278	88.34	0					27	25	2	0	0	0	0.024757	1	11127	11127		15.337	0	1	49569	+		67468	27866	47418	47487	73084	73084					0.061441498723070254
RLTELEKLG	9	Unmodified	_RLTELEKLG_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3007202148438	2	529.813856	1057.61316	-1.3127	-0.00069551	-0.0041509	-2.1992E-06	-1.3169	-0.00069771	529.8137255185336	38.657	0.40767	38.478	38.203	38.611	-0.17929					25	10	3	0	0	0	0.024477	1	3226	3226		44.117	25.792	1	1333700	+		67469	20827	47419	47488	73085	73085					0.0866570102307378
RLTELEKLG	9	Unmodified	_RLTELEKLG_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3004150390625	2	529.813856	1057.61316	-1.0786	-0.00057145	-0.53858	-0.00028534	-1.6172	-0.0008568	529.8134591792583	38.71	0.39736	38.488	38.256	38.653	-0.22149					21	9	3	0	0	0	0.024319	1	3225	3225		56.721	30.028	1	1133000	+		67470	20827	47419	47488	73086	73086					0.0866570102307378
RLTELEKLG	9	Unmodified	_RLTELEKLG_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.813856	1057.61316	-1.8779	-0.00099493	1.1308	0.0005991	-0.74711	-0.00039583	529.8143604723551	38.146	0.81306	38.146	37.702	38.515	0	-0.17539	0.00053447	NaN	31.53	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1157700	+		67471	20827	47419	47488							0.0866570102307378
RLTELEKLG	9	Unmodified	_RLTELEKLG_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.813856	1057.61316	-1.3258	-0.00070243	0.5833	0.00030904	-0.7425	-0.00039339	529.8140354327819	38.084	0.8711	38.002	37.503	38.374	-0.082516	-0.32026	-4.5644E-05	NaN	31.53	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1102900	+		67472	20827	47419	47488							0.0866570102307378
RLTELEKLG	9	Unmodified	_RLTELEKLG_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.813856	1057.61316	-1.7098	-0.00090587	1.2677	0.00067164	-0.44208	-0.00023422	529.814376257565	38.329	1.0689	38.356	37.817	38.886	0.027275	0.034344	0.00067956	NaN	31.53	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1104100	+		67473	20827	47419	47488							0.0866570102307378
RLTEVVNI	8	Unmodified	_RLTEVVNI_					0	0	0			REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2818603515625	2	472.282192	942.549831	-0.30926	-0.00014606	-0.84366	-0.00039845	-1.1529	-0.00054451	472.2816546073445	62.943	0.50013	62.684	62.541	63.041	-0.25824					17	13	2	0	0	0	1.0516	1	7087	7087		29.15	0	1	649300	+		67474	21091	47420	47489	73087	73087					0.0762576030585933
RLTEYPLVI	9	Unmodified	_RLTEYPLVI_					0	0	0		nc|ENSG00000189212|Q6NXN4|DPY19L2P1	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.3262329101562	2	552.326599	1102.63865	-1.4265	-0.00078787	1.5812	0.00087333	0.15472	8.5455E-05	552.3273412155781	65.309	0.58232	65.036	64.748	65.33	-0.27282					44	15	4	0	0	0	0.67687	1	7688	7688		47.657	3.5405	1	1691000			67475	18613	47421	47490	73088	73088					0.09143175545523263
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8828735351562	2	641.879873	1281.74519	0.55582	0.00035677	3.4271	0.0021998	3.9829	0.0025566	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	0.96599	2	12309	12309;12334		44.377	7.723	1	3344500			67476	16190	47422	47491	73089;73090	73089					0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8826904296875	2	641.879873	1281.74519	1.496	0.00096027	2.4492	0.0015721	3.9452	0.0025323	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	0.99553	4	12137	12091;12137;12149;12211		37.812	4.9991	1	2979200			67477	16190	47422	47491	73091;73092;73093;73094	73092					0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8827514648438	2	641.879873	1281.74519	0.89146	0.00057221	3.0615	0.0019651	3.9529	0.0025373	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.99553	1	12245	12245		37.812	8.6415	1	2810000			67478	16190	47422	47491	73095	73095					0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8822631835938	2	641.879873	1281.74519	0.34309	0.00022022	3.5873	0.0023026	3.9304	0.0025228	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.0238	1	11610	11610		31.53	5.9558	1	1209200			67479	16190	47422	47491	73096	73096					0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.88232421875	2	641.879873	1281.74519	0.76256	0.00048947	3.1943	0.0020503	3.9568	0.0025398	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	0.99553	1	11817	11817		37.812	0	1	3421300			67480	16190	47422	47491	73097	73097					0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8821411132812	2	641.879873	1281.74519	-0.57437	-0.00036868	4.4306	0.0028439	3.8562	0.0024752	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	0.70358	1	11715	11715		63.534	30.783	1	1351900			67481	16190	47422	47491	73098	73098					0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	641.879873	1281.74519	0.79865	0.00051264	3.0442	0.001954	3.8429	0.0024667	641.8816989595628	93.984	2.7953	93.984	92.255	95.05	0	0.011186	-0.0014166	NaN	63.534	185	66	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1270800			67482	16190	47422	47491							0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	641.879873	1281.74519	0.74052	0.00047532	3.1139	0.0019988	3.8544	0.0024741	641.8817243749934	93.917	2.6273	93.917	92.283	94.91	-0.00023651	-0.055643	-0.0013271	NaN	63.534	181	62	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1168700			67483	16190	47422	47491							0.11559027559042079
RLTGKPRRPMA	11	Unmodified	_RLTGKPRRPMA_					0	0	0		ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	ENST00000528804.1_1_14:24682355-24682604:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	641.879873	1281.74519	-0.32103	-0.00020606	4.2288	0.0027144	3.9077	0.0025083	641.8824593395727	93.959	2.2977	93.965	92.713	95.011	0.0059814	-0.0077246	0.00010405	NaN	63.534	153	54	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1134300			67484	16190	47422	47491							0.11559027559042079
RLTGWADV	8	Unmodified	_RLTGWADV_					0	0	0		nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2255859375	2	459.245609	916.476666	-0.29037	-0.00013335	-1.8613	-0.0008548	-2.1517	-0.00098815	459.2438456207717	26.035	0.12471	25.865	25.772	25.897	-0.16977					5	3	2	0	0	0	0.027866	1	1287	1287		47.916	12.297	1	54025			67485	9076	47423	47492	73099	73099					0.015086315832149921
RLTHEAAQ	8	Unmodified	_RLTHEAAQ_					0	0	0			REV__ENST00000468227.5_1_3:132387661-132390776:+|nuORF	REV__ENST00000468227.5_1_3:132387661-132390776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.79827880859375	2	463.246141	924.477728	-0.20592	-9.5392E-05	-0.97446	-0.00045142	-1.1804	-0.00054681	463.24552318710374	41.972	0.66103	41.84	41.421	42.082	-0.13219					24	18	2	0	0	0	0.027866	1	3777	3777		79.451	31.535	1	150810	+		67486	20679	47424	47493	73100	73100					0.012468459521301156
RLTKDTGVSL	10	Unmodified	_RLTKDTGVSL_					0	0	0			REV__ENSG00000111845|ENST00000379568|PAK1IP1	REV__ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3164672851562	2	545.316763	1088.61897	-0.23183	-0.00012642	0.0239	1.3033E-05	-0.20793	-0.00011339	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0447	1	11435	11435		40.058	0	1	11601000	+		67487	21950	47425	47494	73101	73101					0.07820799534783873
RLTKDTGVSL	10	Unmodified	_RLTKDTGVSL_					0	0	0			REV__ENSG00000111845|ENST00000379568|PAK1IP1	REV__ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165893554688	2	545.316763	1088.61897	-0.30487	-0.00016625	0.011579	6.3145E-06	-0.29329	-0.00015994	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	1.0719	1	10848	10848		36.447	0	1	3635800	+		67488	21950	47425	47494	73102	73102					0.07820799534783873
RLTKHTTT	8	Unmodified	_RLTKHTTT_					0	0	0			REV__nc|ENSG00000176974|P34896-3|SHMT1;REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2772521972656	2	479.277441	956.540328	0.51465	0.00024666	-0.27369	-0.00013117	0.24097	0.00011549	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	1.0284	1	10498	10498		32.812	0.85756	1	4752300	+		67489	27457;27070	47426	47495	73103	73103					0.06031992020314192
RLTKHTTT	8	Unmodified	_RLTKHTTT_					0	0	0			REV__nc|ENSG00000176974|P34896-3|SHMT1;REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2774658203125	2	479.277441	956.540328	0.63902	0.00030627	-0.86315	-0.00041369	-0.22414	-0.00010742	479.2771210125938	81.156	2.9484	80.92	79.122	82.071	-0.23574					188	70	3	0	0	0	1.0574	1	9739	9739		27.882	1.1893	1	2107600	+		67490	27457;27070	47426	47495	73104	73104					0.06031992020314192
RLTKHTTT	8	Unmodified	_RLTKHTTT_					0	0	0			REV__nc|ENSG00000176974|P34896-3|SHMT1;REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	479.27734375	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.26	1	86.073	85.573	86.573	-0.18696								0	0	0	0.78291	1	10460	10460		35.618	1.4457	1		+		67491	27457;27070	47426	47495	73105	73105					0.06031992020314192
RLTKHTTT	8	Unmodified	_RLTKHTTT_					0	0	0			REV__nc|ENSG00000176974|P34896-3|SHMT1;REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27752685546875	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.97794	1	10283	10283		40.778	1.972	1	7158600	+		67492	27457;27070	47426	47495	73106	73106					0.06031992020314192
RLTKHTTT	8	Unmodified	_RLTKHTTT_					0	0	0			REV__nc|ENSG00000176974|P34896-3|SHMT1;REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	REV__ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.277587890625	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	1.0574	2	10074	10074;10244		27.882	1.0861	1	7407200	+		67493	27457;27070	47426	47495	73107;73108	73107					0.06031992020314192
RLTLAPAR	8	Unmodified	_RLTLAPAR_					0	0	0			REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	REV__ENST00000522939.1_1_8:103876533-103876836:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.2849426269531	2	449.285069	896.555585	-0.47849	-0.00021498	0.53072	0.00023844	0.052228	2.3465E-05	449.2852048956923	34.728	1.0612	34.541	34.199	35.26	-0.18675					62	26	4	0	0	0	0.78609	1	2561	2561		60.294	0	1	2807500	+		67494	34345	47427	47496	73109	73109					0.10316903608179473
RLTLPVIKPPL	11	Unmodified	_RLTLPVIKPPL_					0	0	0		ENSG00000154678|ENST00000396191|PDE1C;nc|ENSG00000154678|Q14123-3|PDE1C	ENSG00000154678|ENST00000396191|PDE1C	ENSG00000154678|ENST00000396191|PDE1C	MSMS	OPSCC_40_ClassI_Rep-1	4	623.91552734375	2	623.915916	1245.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.51	1	107.38	106.88	107.88	-0.1238								0	0	0	1.4974	1	13368	13368		15.642	0.77694	1				67495	6426	47428	47497	73110	73110					0.2042026518442981
RLTLQPAL	8	Unmodified	_RLTLQPAL_					0	0	0		ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2875061035156	2	456.287277	910.560001	0.31411	0.00014333	-0.22518	-0.00010274	0.088937	4.0581E-05	456.2870447615113	57.728	0.95245	57.553	56.803	57.755	-0.1749					39	25	3	0	0	0	0.6536	1	6478	6478		71.296	5.4925	1	1455400			67496	17273	47429	47498	73111	73111					0.10114368031076992
RLTLQPAL	8	Unmodified	_RLTLQPAL_					0	0	0		ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	456.287277	910.560001	0.35582	0.00016235	-0.11899	-5.4292E-05	0.23683	0.00010806	456.2871040003125	57.477	0.49191	57.477	57.227	57.719	0	-0.0030854	-3.3881E-05	NaN	71.296	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2020000			67497	17273	47429	47498							0.10114368031076992
RLTLQPAL	8	Unmodified	_RLTLQPAL_					0	0	0		ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.287277	910.560001	-0.21301	-9.7194E-05	0.43085	0.00019659	0.21784	9.9397E-05	456.28730900259706	57.363	0.55989	57.458	57.165	57.725	0.09531	-0.022126	0.00046788	NaN	71.296	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1671400			67498	17273	47429	47498							0.10114368031076992
RLTLQPAL	8	Unmodified	_RLTLQPAL_					0	0	0		ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.287277	910.560001	0.069241	3.1594E-05	-4.2703	-0.0019485	-4.2011	-0.0019169	456.28486606848105	57.623	0.30196	57.433	57.259	57.56	-0.19018	-0.047514	-0.0038223	NaN	71.296	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69059			67499	17273	47429	47498							0.10114368031076992
RLTMLHCL	8	Unmodified	_RLTMLHCL_					0	0	0		ENST00000220003.13_1_15:75095334-75095484:+|nuORF	ENST00000220003.13_1_15:75095334-75095484:+|nuORF	ENST00000220003.13_1_15:75095334-75095484:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3113098144531	2	493.76734	985.520127	2.1241	0.0010488	-1.7669	-0.00087245	0.35718	0.00017636	493.7663073412588	19.738	0.38179	19.804	19.587	19.969	0.066195					12	7	2	0	0	0	0.027866	1	428	428		57.811	20.783	1	17573			67500	11175	47430	47499	73112	73112					0.026787817644958523
RLTNLFTL	8	Unmodified	_RLTNLFTL_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2923889160156	2	489.292559	976.570566	0.3723	0.00018216	0.4365	0.00021358	0.80881	0.00039574	489.29267255679713	66.165	0.55888	66.165	65.875	66.434	0					44	17	4	0	0	0	0.68164	1	7860	7860		68.787	0	1	7480900			67501	10659	47431	47500	73113	73113					0.0813435068552053
RLTNVIAI	8	Unmodified	_RLTNVIAI_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2745666503906	2	450.287277	898.560001	-1.386	-0.00062412	0.74432	0.00033516	-0.64172	-0.00028896	450.2877325953516	92.374	0.69728	92.231	91.791	92.488	-0.14356					33	16	3	0	0	0	0.027866	1	11365	11365		35.618	0	1	486600	+		67502	23114	47432	47501	73114	73114					0.10666368031081674
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(75)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.8176879882812	2	551.818084	1101.62162	-0.27919	-0.00015406	-0.45946	-0.00025354	-0.73865	-0.0004076	551.8178513540001	39.151	1.2267	39.151	38.797	40.024	0					97	33	5	0	0	0	0.30449	5	3370	3321;3332;3343;3355;3370		75.043	22.107	1	14529000			67503	5988	47433	47502	73115;73116;73117;73118;73119	73119		250			0.07486931668040597
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(58)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.8172607421875	2	551.818084	1101.62162	0.019081	1.0529E-05	-0.78504	-0.0004332	-0.76596	-0.00042267	551.8175087803618	41.391	3.0147	41.391	39.988	43.002	0					194	85	3	0	0	0	0.51687	3	3747	3725;3747;3759		58.23	10.573	1	4031600			67504	5988	47433	47502	73120;73121;73122	73121		250			0.07486931668040597
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(83)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8181762695312	2	551.818084	1101.62162	-1.1222	-0.00061925	0.46219	0.00025505	-0.66	-0.0003642	551.8183606231418	39.207	1.3713	39.109	38.737	40.108	-0.098755					116	37	5	0	0	0	0.247	3	3311	3311;3331;3343		82.75	18.827	1	13865000			67505	5988	47433	47502	73123;73124;73125	73123		250			0.07486931668040597
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(64)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8172607421875	2	551.818084	1101.62162	-0.51184	-0.00028244	-0.12859	-7.0958E-05	-0.64043	-0.0003534	551.817852230935	41.761	2.9951	41.629	40.075	43.07	-0.1322					204	84	4	0	0	0	0.43628	2	3753	3742;3753		63.534	22.756	1	3618100			67506	5988	47433	47502	73126;73127	73127		250			0.07486931668040597
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(91)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.8180541992188	2	551.818084	1101.62162	-1.0916	-0.00060235	0.6149	0.00033931	-0.47668	-0.00026304	551.818436327779	39.408	1.5691	39.431	38.993	40.563	0.023727					118	40	5	0	0	0	0.18994	5	3347	3312;3322;3334;3347;3361		90.601	20.973	1	14850000			67507	5988	47433	47502	73128;73129;73130;73131;73132	73131		250			0.07486931668040597
RLTPKLMEV	9	Oxidation (M)	_RLTPKLM(Oxidation (M))EV_		RLTPKLM(1)EV		RLTPKLM(67)EV	0	0	1		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.8170166015625	2	551.818084	1101.62162	-0.29837	-0.00016465	-0.34504	-0.0001904	-0.64341	-0.00035505	551.817725195288	41.69	2.7596	41.713	40.424	43.183	0.023006					187	78	4	0	0	0	0.37611	3	3726	3702;3715;3726		67.494	16.724	1	3094700			67508	5988	47433	47502	73133;73134;73135	73135		250			0.07486931668040597
RLTPKLMEV	9	Unmodified	_RLTPKLMEV_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8198852539062	2	543.820627	1085.6267	-0.91123	-0.00049554	2.5309	0.0013764	1.6197	0.00088081	543.8204033181283	47.63	2.1834	47.63	47.216	49.399	0					176	63	6	0	0	0	0.32064	2	4797	4785;4797		72.879	10.597	1	22379000			67509	5988	47433	47503	73136;73137	73137					0.08731235530672166
RLTPKLMEV	9	Unmodified	_RLTPKLMEV_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.820068359375	2	543.820627	1085.6267	-0.91661	-0.00049847	2.0881	0.0011356	1.1715	0.00063709	543.8203714709691	47.785	1.7405	47.632	47.265	49.005	-0.153					176	50	6	0	0	0	0.10464	3	4807	4784;4795;4807		109.48	21.782	1	24001000			67510	5988	47433	47503	73138;73139;73140	73140					0.08731235530672166
RLTPKLMEV	9	Unmodified	_RLTPKLMEV_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8196411132812	2	543.820627	1085.6267	-1.5585	-0.00084752	2.9478	0.0016031	1.3894	0.00075558	543.8206942234357	47.55	2.311	47.609	47.214	49.525	0.059097					178	65	6	0	0	0	0.35556	4	4726	4717;4726;4738;4752		68.846	13.998	1	25751000			67511	5988	47433	47503	73141;73142;73143;73144	73142					0.08731235530672166
RLTQENKL	8	Unmodified	_RLTQENKL_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B;REV__ENSG00000148513|ENST00000361713|ANKRD30A	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.290771484375	2	501.290548	1000.56654	1.6062	0.00080519	-2.0245	-0.0010149	-0.4183	-0.00020969	501.28951609253915	23.965	1.1233	23.784	23.294	24.418	-0.18089					61	25	4	0	0	0	0.32162	1	979	979		108.09	3.3409	1	532510	+		67512	27363;19142	47434	47504	73145	73145					0.06628261191792717
RLTQFYISL	9	Unmodified	_RLTQFYISL_					0	0	0			REV__ENST00000175091.4_1_2:20232757-20232880:-|nuORF	REV__ENST00000175091.4_1_2:20232757-20232880:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.2281494140625	2	570.824224	1139.63389	0.12637	7.2133E-05	-1.2555	-0.00071665	-1.1291	-0.00064451	570.8236636645139	63.084	0.37087	62.863	62.691	63.062	-0.22097					11	8	2	0	0	0	0.02435	1	7112	7112		42.396	3.59	1	164720	+		67513	29286	47435	47505	73146	73146					0.06966291402773095
RLTQFYISL	9	Unmodified	_RLTQFYISL_					0	0	0			REV__ENST00000175091.4_1_2:20232757-20232880:-|nuORF	REV__ENST00000175091.4_1_2:20232757-20232880:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2291870117188	2	570.824224	1139.63389	-0.22405	-0.00012789	-0.77971	-0.00044508	-1.0038	-0.00057297	570.8236562245485	63.051	0.41296	62.867	62.704	63.117	-0.18386					13	9	2	0	0	0	0.024405	1	7128	7128		35.618	20.753	1	226730	+		67514	29286	47435	47505	73147	73147					0.06966291402773095
RLTQFYISL	9	Unmodified	_RLTQFYISL_					0	0	0			REV__ENST00000175091.4_1_2:20232757-20232880:-|nuORF	REV__ENST00000175091.4_1_2:20232757-20232880:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	570.2299194335938	2	570.824224	1139.63389	0.16734	9.5524E-05	-1.5161	-0.0008654	-1.3487	-0.00076988	570.8233544800682	63.25	0.37556	62.991	62.706	63.081	-0.25824					12	8	2	0	0	0	0.024319	1	7139	7139		66.429	3.123	1	246440	+		67515	29286	47435	47505	73148	73148					0.06966291402773095
RLTQNKVLS	9	Unmodified	_RLTQNKVLS_					0	0	0			REV__ENST00000600120.5_1_19:53612282-53612552:-|nuORF	REV__ENST00000600120.5_1_19:53612282-53612552:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8198852539062	2	529.819473	1057.62439	0.88051	0.00046651	-1.4719	-0.00077982	-0.59135	-0.00031331	529.8187423488521	19.845	1.6257	19.612	19.226	20.851	-0.23345					80	32	5	0	0	0	0.2508	1	435	435		82.241	18.033	1	4033900	+		67516	35840	47436	47506	73149	73149					0.09788523117231307
RLTQVDAGAV	10	Unmodified	_RLTQVDAGAV_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2718505859375	2	515.288005	1028.56146	-0.41185	-0.00021222	4.316	0.002224	3.9042	0.0020118	515.2901244078857	63.247	0.86509	63.247	62.98	63.845	0					40	23	2	0	0	0	0.03519	1	7359	7359		22.58	0	1	4170000	+		67517	22273	47437	47507	73150	73150					0.04831957329179204
RLTRIPSN	8	Unmodified	_RLTRIPSN_					0	0	0		ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	ENSG00000175928|ENST00000319331|LRRN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.78546142578125	2	478.785433	955.556313	0.41235	0.00019743	-0.4463	-0.00021368	-0.033952	-1.6256E-05	478.78517028501756	91.36	2.0991	91.221	90.863	92.962	-0.13941					79	49	4	0	0	0	1.0198	1	11193	11193		34.173	0	1	2115600			67518	8598	47438	47508	73151	73151					0.0767569825721921
RLTRLLSR	8	Unmodified	_RLTRLLSR_					0	0	0			REV__ENST00000290552.7_1_16:55358927-55360360:+|nuORF	REV__ENST00000290552.7_1_16:55358927-55360360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.8133239746094	2	507.830175	1013.6458	-0.17444	-8.8585E-05	-3.9414	-0.0020015	-4.1158	-0.0020901	507.82850049124204	93.027	0.29591	93.035	92.887	93.183	0.0077286					9	6	2	0	0	0	0.027866	1	11724	11724		31.955	0	1	48913	+		67519	29934	47439	47509	73152	73152					0.13951952936611178
RLTRVPTG	8	Unmodified	_RLTRVPTG_					0	0	0			REV__nc|ENSG00000182541|P53671-2|LIMK2	REV__nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2748107910156	2	450.274701	898.534849	-0.35559	-0.00016011	-0.72196	-0.00032508	-1.0775	-0.00048519	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	1.0106	1	11714	11714		35.618	3.6634	1	67958000	+		67520	27486	47440	47510	73153	73153					0.08152313228515595
RLTRVPTG	8	Unmodified	_RLTRVPTG_					0	0	0			REV__nc|ENSG00000182541|P53671-2|LIMK2	REV__nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.27386474609375	2	450.274701	898.534849	-0.17068	-7.6855E-05	-0.93719	-0.00042199	-1.1079	-0.00049885	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	1.0574	1	11649	11649		27.882	2.4321	1	67707000	+		67521	27486	47440	47510	73154	73154					0.08152313228515595
RLTSFIGAI	9	Unmodified	_RLTSFIGAI_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;ENST00000551620.5_1_12:69979244-69983508:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000549933.5_1_12:69979244-69980637:+|nuORF;ENST00000550455.5_1_12:69979244-69981425:+|nuORF	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.29248046875	2	489.292559	976.570566	-0.23888	-0.00011688	3.5806	0.001752	3.3417	0.0016351	489.2927836729603	66.745	1.2941	66.745	66.461	67.755	0					86	32	5	0	0	0	0.18915	1	7950	7950		90.777	11.326	1	3575400			67522	7527	47441	47511	73155	73155					0.0813435068552053
RLTSLVPFV	9	Unmodified	_RLTSLVPFV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;ENST00000462527.2_1_10:120819077-120819266:-|nuORF	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.31396484375	2	516.316035	1030.61752	-0.26252	-0.00013554	-4.117	-0.0021257	-4.3795	-0.0022612	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	0.85329	1	12518	12518		35.618	2.8059	1	33267000			67523	2844	47442	47512	73156	73156					0.10343210236646883
RLTTSPSLL	9	Unmodified	_RLTTSPSLL_					0	0	0			REV__nc|ENSG00000117115|Q9Y2J8-2|PADI2	REV__nc|ENSG00000117115|Q9Y2J8-2|PADI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2815246582031	2	494.295299	986.576045	-0.10814	-5.3452E-05	-0.41728	-0.00020626	-0.52542	-0.00025971	494.2949663135021	24.634	0.56867	24.459	24.296	24.865	-0.17484					20	12	2	0	0	0	0.024487	1	1129	1129		31.955	0	1	251640	+		67524	22324	47443	47513	73157	73157					0.08222029477337855
RLTVCLVSVIY	11	Unmodified	_RLTVCLVSVIY_					0	0	0		ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.5821228027344	3	422.581053	1264.72133	0.49638	0.00020976	1.681	0.00071034	2.1773	0.0009201	422.58168788498597	95.965	2.872	95.828	94.982	97.854	-0.13689					198	65	4	0	0	0	1.0344	1	11859	11859		20.315	3.5976	1	769050			67525	11496	47444	47514	73158	73158					0.09955749282039505
RLTVCLVSVIY	11	Unmodified	_RLTVCLVSVIY_					0	0	0		ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	422.581053	1264.72133	0.99041	0.00041853	1.1892	0.00050252	2.1796	0.00092105	422.5814761625564	95.891	3.2213	95.893	95.007	98.228	0.0020752	0.035646	-0.00074375	NaN	20.315	187	74	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598660			67526	11496	47444	47514							0.09955749282039505
RLTVYTDSL	9	Unmodified	_RLTVYTDSL_					0	0	0			REV__ENSG00000075340|ENST00000264436|ADD2	REV__ENSG00000075340|ENST00000264436|ADD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.274169921875	2	534.290214	1066.56587	-0.32119	-0.00017161	-1.9014	-0.0010159	-2.2226	-0.0011875	534.2904010057999	89.101	0.2923	89.101	88.978	89.27	0					9	6	2	0	0	0	0.024319	1	11230	11230		56.721	10.749	1	84153	+		67527	20545	47445	47515	73159	73159					0.03525421752101465
RLTWMRRAL	9	Unmodified	_RLTWMRRAL_					0	0	0			REV__nc|ENSG00000197006|Q9H1A3-2|METTL9	REV__nc|ENSG00000197006|Q9H1A3-2|METTL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.5597229003906	3	401.569482	1201.68662	-0.74376	-0.00029867	4.2492	0.0017063	3.5054	0.0014077	401.5717695545904	35.549	0.22766	35.362	35.26	35.488	-0.18675					9	5	2	0	0	0	0.024484	1	2698	2698		23.523	3.4922	1	71322	+		67528	28251	47446	47516	73160	73160					0.09383970984572443
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.35302734375	2	611.358765	1220.70298	-1.2666	-0.00077434	-3.194	-0.0019527	-4.4606	-0.002727	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.0992	1	11711	11711		32.812	3.6424	1	3820300			67529	4445	47447	47517	73161	73161					0.10145375422303005
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3516235351562	2	611.358765	1220.70298	-0.79597	-0.00048662	-3.5905	-0.0021951	-4.3865	-0.0026817	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.0393	3	11612	11600;11612;11646		40.778	6.6056	1	4189200			67530	4445	47447	47517	73162;73163;73164	73163					0.10145375422303005
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.355224609375	2	611.358765	1220.70298	-2.7988	-0.0017111	-1.7638	-0.0010783	-4.5626	-0.0027894	611.3575286656617	92.522	1.7327	92.379	91.617	93.35	-0.14356					150	40	4	0	0	0	0.66532	5	11368	11356;11368;11380;11403;11427		69.628	31.816	1	4645400			67531	4445	47447	47517	73165;73166;73167;73168;73169	73166					0.10145375422303005
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3563842773438	2	611.358765	1220.70298	-1.8096	-0.0011063	-2.4397	-0.0014915	-4.2494	-0.0025979	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.118	1	11719	11719		30.318	1.1477	1	13060000			67532	4445	47447	47517	73170	73170					0.10145375422303005
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3536376953125	2	611.358765	1220.70298	-0.35919	-0.00021959	-4.2972	-0.0026271	-4.6564	-0.0028467	611.3559902690897	92.567	2.8634	92.445	90.59	93.453	-0.12241					191	67	5	0	0	0	0.96965	6	11357	11357;11369;11381;11393;11405;11429		49.442	10.46	1	4932800			67533	4445	47447	47517	73171;73172;73173;73174;73175;73176	73171					0.10145375422303005
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.355224609375	2	611.358765	1220.70298	-0.19635	-0.00012004	-4.4372	-0.0027127	-4.6335	-0.0028328	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.0393	1	11390	11390		40.778	2.9666	1	5237500			67534	4445	47447	47517	73177	73177					0.10145375422303005
RLVAVLQGKHS	11	Unmodified	_RLVAVLQGKHS_					0	0	0		ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3663330078125	2	604.367121	1206.71969	-1.4686	-0.00088758	0.85378	0.00051599	-0.61484	-0.00037159	604.367526793805	103.31	1.7422	103.31	103	104.74	0					106	42	5	0	0	0	1.0648	1	13302	13302		12.207	0	1	4767200			67535	4063	47448	47518	73178	73178					0.12459876308275852
RLVCQATVSH	10	Unmodified	_RLVCQATVSH_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.8328247070312	2	557.295307	1112.57606	-0.33338	-0.00018579	-1.7844	-0.00099446	-2.1178	-0.0011802	557.2939668373376	39.623	0.57806	39.459	39.153	39.731	-0.16459					31	14	3	0	0	0	0.03519	1	3338	3338		62.107	19.243	1	599480	+		67536	19879	47449	47519	73179	73179					0.024277062056626164
RLVDDIPLC	9	Unmodified	_RLVDDIPLC_					0	0	0			REV__ENST00000459840.5_1_3:3192551-3196584:-|nuORF	REV__ENST00000459840.5_1_3:3192551-3196584:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.2794799804688	2	522.281334	1042.54812	-0.37314	-0.00019488	-3.3843	-0.0017675	-3.7574	-0.0019624	522.2795217951365	59.951	1.1876	59.751	59.393	60.58	-0.20016					91	30	5	0	0	0	0.72875	1	6821	6821		44.117	0	1	9775200	+		67537	22096	47450	47520	73180	73180					0.02854383225599122
RLVDLPLGL	9	Unmodified	_RLVDLPLGL_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3177795410156	2	498.316035	994.617516	-0.022293	-1.1109E-05	0.75413	0.0003758	0.73184	0.00036469	498.3162564198796	79.145	1.338	79.145	78.825	80.163	0					70	31	4	0	0	0	0.39228	2	9808	9808;9821		66.429	10.925	1	1426900			67538	6362	47451	47521	73181;73182	73181					0.11999210236660929
RLVDLPLGL	9	Unmodified	_RLVDLPLGL_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.3170471191406	2	498.316035	994.617516	-0.80759	-0.00040244	1.4221	0.00070868	0.61455	0.00030624	498.31660702549084	79.305	1.4196	79.133	78.819	80.239	-0.17226					82	33	3	0	0	0	0.33245	2	9795	9795;9822		71.296	15.791	1	1259800			67539	6362	47451	47521	73183;73184	73183					0.11999210236660929
RLVDLPLGL	9	Unmodified	_RLVDLPLGL_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3164978027344	2	498.316035	994.617516	0.038749	1.9309E-05	0.44253	0.00022052	0.48127	0.00023983	498.31612000077445	79.178	1.1556	79.197	78.946	80.101	0.018677					65	27	3	0	0	0	0.59099	1	9749	9749		53.351	1.0523	1	1225300			67540	6362	47451	47521	73185	73185					0.11999210236660929
RLVEIQYEL	9	Unmodified	_RLVEIQYEL_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;nc|ENSG00000139436|Q14161-9|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.8264770507812	2	581.826963	1161.63937	-1.4904	-0.00086714	1.5757	0.00091679	0.085334	4.965E-05	581.8277906947976	65.273	0.7824	65.273	65.055	65.837	0					60	21	4	0	0	0	0.29609	1	7731	7731		76.17	9.7404	1	4612400			67541	18329	47452	47522	73186	73186					0.06501970194563
RLVEIQYEL	9	Unmodified	_RLVEIQYEL_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;nc|ENSG00000139436|Q14161-9|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.8270874023438	2	581.826963	1161.63937	0.072175	4.1994E-05	0.037699	2.1934E-05	0.10987	6.3928E-05	581.8269222309417	65.302	0.89888	65.339	65.152	66.051	0.037376					68	24	4	0	0	0	0.1764	1	7653	7653		93.598	16.751	1	3402800			67542	18329	47452	47522	73187	73187					0.06501970194563
RLVEVMHPS	9	Unmodified	_RLVEVMHPS_					0	0	0		ENSG00000173137|ENST00000308860|ADCK5;ENST00000529654.5_1_8:145615920-145616956:+|nuORF	ENSG00000173137|ENST00000308860|ADCK5	ENSG00000173137|ENST00000308860|ADCK5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.28857421875	2	534.286951	1066.55935	2.4799	0.001325	0.85838	0.00045862	3.3382	0.0017836	534.2873389735579	18.161	0.73414	18.161	17.94	18.674	0					32	14	4	0	0	0	0.72875	1	252	252		44.117	6.3053	1	305800			67543	8342	47453	47523	73188	73188					0.028732053197245477
RLVKPPNPLLI	11	Unmodified	_RLVKPPNPLLI_					0	0	0			REV__ENST00000608949.5_1_1:227751395-227838673:+|nuORF	REV__ENST00000608949.5_1_1:227751395-227838673:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	630.4147338867188	2	630.41354	1258.81253	-0.20101	-0.00012672	1.816	0.0011449	1.615	0.0010181	630.414584541208	106.04	1.3341	106.04	105.73	107.06	0.00015259					78	46	3	0	0	0	1.0718	1	13526	13526		19.104	0	1	829630	+		67544	35975	47454	47524	73189	73189					0.19347381041666267
RLVKPPNPLLI	11	Unmodified	_RLVKPPNPLLI_					0	0	0			REV__ENST00000608949.5_1_1:227751395-227838673:+|nuORF	REV__ENST00000608949.5_1_1:227751395-227838673:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	630.41354	1258.81253	-0.42941	-0.0002707	1.1382	0.00071752	0.70877	0.00044682	630.4140271546222	106.14	0.42899	106.01	105.73	106.16	-0.1238	0.024538	-0.00094055	NaN	19.104	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199910	+		67545	35975	47454	47524							0.19347381041666267
RLVLVVLSL	9	Unmodified	_RLVLVVLSL_					0	0	0		ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	ENSG00000095752|ENST00000264563|IL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27960205078125	2	506.349877	1010.6852	-0.096036	-4.8628E-05	-1.5569	-0.00078834	-1.653	-0.00083697	506.3489679623832	49.967	0.53014	50.048	49.847	50.377	0.08099					25	15	2	0	0	0	0.024506	1	5098	5098		23.042	4.7181	1	379140			67546	2036	47455	47525	73190	73190					0.18028660167453836
RLVLYVVK	8	Unmodified	_RLVLYVVK_					0	0	0		nc|ENSG00000135828|Q05823-2|RNASEL;ENSG00000135828|ENST00000367559|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2759094238281	2	495.328945	988.643337	-0.39587	-0.00019609	-0.29064	-0.00014396	-0.68651	-0.00034005	495.3286403551504	32.243	0.3429	32.085	31.861	32.204	-0.15772					13	7	3	0	0	0	0.027866	1	2164	2164		20.482	2.1574	1	69349			67547	4937	47456	47526	73191	73191					0.14856104478940324
RLVLYVVK	8	Unmodified	_RLVLYVVK_					0	0	0		nc|ENSG00000135828|Q05823-2|RNASEL;ENSG00000135828|ENST00000367559|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.328945	988.643337	-0.23384	-0.00011583	0.3186	0.00015781	0.084764	4.1986E-05	495.3290623501156	32.272	0.39135	32.036	31.824	32.216	-0.23667	-0.0027764	0.0005596	NaN	20.482	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79120			67548	4937	47456	47526							0.14856104478940324
RLVPKKIPG	9	Unmodified	_RLVPKKIPG_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2964782714844	2	504.339844	1006.66514	3.5261	0.0017783	0.76111	0.00038386	4.2872	0.0021622	504.84184051549073	18.811	0.24484	18.874	18.747	18.992	0.063307					6	4	2	0	0	0	0.024523	1	298	298		29.15	9.7896	1	20433	+		67549	22351	47457	47527	73192	73192					0.16206909227514643
RLVPQSSSL	9	Unmodified	_RLVPQSSSL_					0	0	0			REV__ENST00000496961.5_1_1:110040563-110040815:+|nuORF	REV__ENST00000496961.5_1_1:110040563-110040815:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7852783203125	2	493.785099	985.555644	-0.016773	-8.2821E-06	-0.33646	-0.00016614	-0.35323	-0.00017442	493.7848452576167	41.491	0.81483	41.514	41.04	41.854	0.023006					50	22	4	0	0	0	0.29158	1	3686	3686		76.774	2.5191	1	3089700	+		67550	33841	47458	47528	73193	73193					0.06228858817530636
RLVQGLLLD	9	Unmodified	_RLVQGLLLD_					0	0	0			REV__ENST00000314355.6_1_9:91926125-91930123:+|nuORF	REV__ENST00000314355.6_1_9:91926125-91930123:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.7923583984375	2	513.818941	1025.62333	-0.16737	-8.6E-05	-0.29448	-0.00015131	-0.46186	-0.00023731	513.8185979684806	25.605	0.16769	25.685	25.581	25.749	0.08009					5	3	2	0	0	0	0.024292	1	1164	1164		58.782	32.089	1	42189	+		67551	30241	47459	47529	73194	73194					0.11154308748336916
RLVRGVSD	8	Unmodified	_RLVRGVSD_					0	0	0			REV__nc|ENSG00000059573|P54886-2|ALDH18A1	REV__nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.26458740234375	2	451.264333	900.514114	-0.58808	-0.00026538	0.27637	0.00012472	-0.3117	-0.00014066	451.26440910325346	33.013	0.7205	32.847	32.516	33.236	-0.16565					50	17	4	0	0	0	1.0572	1	2327	2327		28.254	0	1	5149700	+		67552	20241	47460	47530	73195	73195					0.059877228488517176
RLVRIPSF	8	Unmodified	_RLVRIPSF_					0	0	0			REV__ENST00000565246.6_2_16:70277537-70279514:-|nuORF	REV__ENST00000565246.6_2_16:70277537-70279514:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.25042724609375	2	494.308544	986.602535	0.39602	0.00019576	-2.0429	-0.0010098	-1.6468	-0.00081405	494.3073644626722	68.635	0.68314	68.392	68.149	68.832	-0.24277					42	16	3	0	0	0	0.027866	1	7948	7948		45.952	6.6991	1	589000	+		67553	35272	47461	47531	73196	73196					0.10869763159314516
RLVSKLNL	8	Unmodified	_RLVSKLNL_					0	0	0			REV__ENSG00000135540|ENST00000343505|NHSL1	REV__ENSG00000135540|ENST00000343505|NHSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.8092041015625	2	471.808377	941.6022	0.07174	3.3848E-05	-0.15796	-7.4528E-05	-0.086222	-4.068E-05	471.80821029540795	40.758	1.2493	40.781	40.494	41.743	0.023006					82	35	5	0	0	0	0.42327	2	3577	3562;3577		94.006	14.555	1	8657500	+		67554	23556	47462	47532	73197;73198	73198					0.1290634343945385
RLVSSDPEI	9	Unmodified	_RLVSSDPEI_					0	0	0		ENSG00000090273|ENST00000321265|NUDC;ENST00000484772.1_1_1:27271823-27272075:+|nuORF;ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2740478515625	2	508.274564	1014.53457	-0.32102	-0.00016317	-0.31999	-0.00016265	-0.64101	-0.00032581	508.27428126879727	44.732	0.62341	44.769	44.443	45.067	0.036903					43	17	4	0	0	0	0.19099	1	4238	4238		90.37	23.941	1	3730200			67555	1925	47463	47533	73199	73199					0.027888487179893673
RLVSSDPEI	9	Unmodified	_RLVSSDPEI_					0	0	0		ENSG00000090273|ENST00000321265|NUDC;ENST00000484772.1_1_1:27271823-27272075:+|nuORF;ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.274564	1014.53457	-0.94657	-0.00048112	0.081102	4.1222E-05	-0.86546	-0.00043989	508.2745252802349	44.708	0.52103	44.708	44.485	45.006	0	-0.014885	-6.8182E-05	NaN	90.37	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3803700			67556	1925	47463	47533							0.027888487179893673
RLVSSDPEI	9	Unmodified	_RLVSSDPEI_					0	0	0		ENSG00000090273|ENST00000321265|NUDC;ENST00000484772.1_1_1:27271823-27272075:+|nuORF;ENST00000437039.1_1_2:179319678-179320041:+|nuORF	ENSG00000090273|ENST00000321265|NUDC	ENSG00000090273|ENST00000321265|NUDC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.274564	1014.53457	-1.0672	-0.00054244	0.38573	0.00019606	-0.68149	-0.00034638	508.2746911621129	44.841	0.61992	44.693	44.39	45.009	-0.1488	-0.030671	0.00024149	NaN	90.37	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3485300			67557	1925	47463	47533							0.027888487179893673
RLVSTIEE	8	Unmodified	_RLVSTIEE_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7646179199219	2	473.763832	945.513111	-0.54054	-0.00025609	1.8632	0.00088271	1.3226	0.00062662	473.764646220426	28.418	0.95946	28.249	27.768	28.727	-0.16897					61	22	4	0	0	0	0.93274	1	1651	1651		47.916	1.9636	1	1945700			67558	3610	47464	47534	73200	73200					0.03817463689279066
RLVVPQSLT	9	Unmodified	_RLVVPQSLT_					0	0	0		ENST00000156825.5_1_19:1577583-1577715:-|nuORF	ENST00000156825.5_1_19:1577583-1577715:-|nuORF	ENST00000156825.5_1_19:1577583-1577715:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.79833984375	2	506.811116	1011.60768	-0.022854	-1.1583E-05	3.3688	0.0017073	3.3459	0.0016957	507.31406529626	20.312	0.24334	20.088	19.973	20.216	-0.22344					7	4	2	0	0	0	0.024344	1	509	509		37.812	0	1	17495			67559	11111	47465	47535	73201	73201					0.10234022231270501
RLVVTYLGS	9	Unmodified	_RLVVTYLGS_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.75823974609375	2	504.297842	1006.58113	-0.51334	-0.00025888	-0.064161	-3.2356E-05	-0.57751	-0.00029123	504.29771240971604	60.273	0.74396	60.073	59.616	60.36	-0.20016					32	19	2	0	0	0	0.024487	1	6842	6842		31.955	5.1588	1	1263800	+		67560	25563	47466	47536	73202	73202					0.07810333339944009
RLVWLGLR	8	Unmodified	_RLVWLGLR_					0	0	0		ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	ENSG00000257218|ENST00000551765|GATC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8277587890625	2	506.824361	1011.63417	5.2876	0.0026799	2.0049	0.0010161	7.2925	0.003696	506.8252498667382	17.446	0.37442	17.506	17.379	17.754	0.06036					24	11	3	0	0	0	1.0574	1	140	140		25.45	4.5032	1	110720			67561	10917	47467	47537	73203	73203					0.128817559132699
RLWEGAISI	9	Unmodified	_RLWEGAISI_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7947998046875	2	522.795466	1043.57638	-0.58027	-0.00030336	0.27524	0.0001439	-0.30503	-0.00015947	522.7954716166557	68.224	0.77042	68.224	67.947	68.717	0					60	19	4	0	0	0	0.17845	2	8171	8171;8184		93.143	13.431	1	3845600			67562	2814	47468	47538	73204;73205	73204					0.056334491971938405
RLWEGAISI	9	Unmodified	_RLWEGAISI_					0	0	0		ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	ENSG00000106785|ENST00000341469|TRIM14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.79541015625	2	522.795466	1043.57638	-0.020008	-1.046E-05	-0.19364	-0.00010123	-0.21365	-0.0001117	522.7952389325403	68.577	0.81238	68.284	68.013	68.825	-0.29267					67	20	6	0	0	0	0.22902	2	8202	8192;8202		85.161	10.118	1	3288000			67563	2814	47468	47538	73206;73207	73207					0.056334491971938405
RLWELPAV	8	Unmodified	_RLWELPAV_					0	0	0			REV__nc|ENSG00000198373|O00308-3|WWP2	REV__nc|ENSG00000198373|O00308-3|WWP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.3022766113281	2	492.287277	982.560001	0.40864	0.00020117	-3.1876	-0.0015692	-2.779	-0.0013681	492.28592712968	95.691	0.91876	95.694	95.389	96.308	0.0033798					29	21	2	0	0	0	0.027866	1	12144	12144		45.952	15.448	1	152580	+		67564	28416	47469	47539	73208	73208					0.06802368031083006
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3009643554688	2	542.300916	1082.58728	-1.3473	-0.00073064	-0.041525	-2.2519E-05	-1.3888	-0.00075315	542.3008640946439	64.767	1.7211	64.767	64.384	66.105	0					87	46	2	0	0	0	0.16539	4	7614	7614;7625;7637;7649		96.034	26.406	1	21949000			67565	4051;3357	47470	47540	73209;73210;73211;73212	73209					0.04928851571457926
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3008422851562	2	542.300916	1082.58728	-1.928	-0.0010455	0.39738	0.0002155	-1.5306	-0.00083003	542.3010836243654	65.04	1.697	64.777	64.417	66.114	-0.2626					88	45	2	0	0	0	0.22379	4	7626	7626;7637;7649;7661		85.862	14.062	1	23435000			67566	4051;3357	47470	47540	73213;73214;73215;73216	73213					0.04928851571457926
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2996215820312	2	542.300916	1082.58728	-1.2708	-0.00068918	-0.13093	-7.1006E-05	-1.4018	-0.00076019	542.3008168915045	64.723	1.688	64.769	64.448	66.137	0.045502					85	45	2	0	0	0	0.29609	2	7571	7537;7571		76.17	16.051	1	21138000			67567	4051;3357	47470	47540	73217;73218	73218					0.04928851571457926
RLWGEPVNL	9	Unmodified	_RLWGEPVNL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;USP9X-BLVRB|1|fusion;USP9X|p.L1750Ffs*14|1|0.46|ENSG00000124486|chrX:41214626-41214626|C/-|frameshift_variant;ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.3010864257812	2	542.300916	1082.58728	-0.85096	-0.00046148	0.56039	0.0003039	-0.29058	-0.00015758	542.3011842822747	65.048	0.72145	64.814	64.452	65.174	-0.2345					31	17	2	0	0	0	0.33603	1	7433	7433		70.816	21.375	1	4686300			67568	4051;3357	47470	47540	73219	73219					0.04928851571457926
RLWLAELKRLY	11	Unmodified	_RLWLAELKRLY_					0	0	0		ENSG00000145911|ENST00000274605|N4BP3	ENSG00000145911|ENST00000274605|N4BP3	ENSG00000145911|ENST00000274605|N4BP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7839050292969	3	487.629394	1459.86635	0.29411	0.00014342	-4.4692	-0.0021793	-4.1751	-0.0020359	487.62748038422063	101.52	1.2573	101.39	100.77	102.03	-0.13157					39	28	2	0	0	0	0.024873	1	12520	12520		14.086	3.9821	1	60834			67569	5847	47471	47541	73220	73220					0.15481553473341592
RLWNETVEL	9	Unmodified	_RLWNETVEL_					0	0	0		ENSG00000035499|ENST00000265036|DEPDC1B;nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	580.3052368164062	2	580.308938	1158.60332	-0.61482	-0.00035679	0.46248	0.00026838	-0.15233	-8.8401E-05	580.3092329758972	64.293	1.1368	64.293	63.954	65.091	0					79	30	4	0	0	0	0.12914	2	7556	7556;7567		104.06	10.914	1	5739300			67570	1031	47472	47542	73221;73222	73221					0.030365130177187893
RLWNETVEL	9	Unmodified	_RLWNETVEL_					0	0	0		ENSG00000035499|ENST00000265036|DEPDC1B;nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	580.306396484375	2	580.308938	1158.60332	-1.2379	-0.00071834	1.3517	0.00078439	0.11382	6.6051E-05	580.3097909076911	64.575	0.93478	64.313	63.976	64.911	-0.2626					64	24	4	0	0	0	0.12914	2	7567	7567;7579		104.06	32.179	1	4432400			67571	1031	47472	47542	73223;73224	73223					0.030365130177187893
RLWNETVEL	9	Unmodified	_RLWNETVEL_					0	0	0		ENSG00000035499|ENST00000265036|DEPDC1B;nc|ENSG00000035499|Q8WUY9-2|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	ENSG00000035499|ENST00000265036|DEPDC1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	580.3076782226562	2	580.308938	1158.60332	0.45112	0.00026179	-0.67886	-0.00039395	-0.22774	-0.00013216	580.3086080276304	64.328	1.1134	64.374	64.081	65.195	0.045502					86	29	5	0	0	0	0.22902	1	7490	7490		85.161	7.8432	1	4664000			67572	1031	47472	47542	73225	73225					0.030365130177187893
RLWSMIYR	8	Unmodified	_RLWSMIYR_					0	0	0		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.8062744140625	2	562.805311	1123.59607	-0.29143	-0.00016402	2.4922	0.0014027	2.2008	0.0012386	562.8065618321316	34.75	1.0777	34.544	34.201	35.279	-0.20695					64	26	6	0	0	0	0.99042	1	2603	2603		38.806	1.647	1	1797200			67573	12117	47473	47543	73226	73226					0.039215019362927706
RLWYQNPG	8	Unmodified	_RLWYQNPG_					0	0	0		PXDN|p.E1252Q|1|0.28|ENSG00000130508|chr2:1643566-1643566|C/G|missense_variant	PXDN|p.E1252Q|1|0.28|ENSG00000130508|chr2:1643566-1643566|C/G|missense_variant	PXDN|p.E1252Q|1|0.28|ENSG00000130508|chr2:1643566-1643566|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.316650390625	2	517.264333	1032.51411	-0.41443	-0.00021437	-2.3171	-0.0011986	-2.7316	-0.0014129	517.2638127540334	29.321	0.21845	29.148	28.981	29.199	-0.17258					5	4	2	0	0	0	0.027866	1	1780	1780		35.201	0	1	20497			67574	19013	47474	47544	73227	73227					-0.0008427715115431056
RLYDGLFKV	9	Unmodified	_RLYDGLFKV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.8187255859375	2	555.818941	1109.62333	-0.41302	-0.00022956	0.21178	0.00011771	-0.20124	-0.00011185	555.8188999802968	60.609	0.679	60.403	60.131	60.81	-0.20599					38	16	4	0	0	0	0.67244	1	6747	6747		47.96	7.1814	1	1239500			67575	7763	47475	47545	73228	73228					0.0729030874831551
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.3031005859375	2	559.303655	1116.59276	0.0027216	1.5222E-06	-0.68192	-0.0003814	-0.6792	-0.00037988	559.3031418008561	46.349	0.98428	46.349	46.056	47.04	0					74	26	5	0	0	0	0.23085	3	4583	4571;4583;4594		84.916	18.772	1	5431100			67576	2394	47476	47546	73229;73230;73231	73230					0.03912530363277256
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.303955078125	2	559.303655	1116.59276	-1.2397	-0.00069337	0.77534	0.00043365	-0.46437	-0.00025972	559.3039340703388	46.445	1.1342	46.294	45.92	47.054	-0.15157					102	30	5	0	0	0	0.1158	3	4564	4564;4576;4588		107.01	52.231	1	5761800			67577	2394	47476	47546	73232;73233;73234	73232					0.03912530363277256
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.3032836914062	2	559.303655	1116.59276	-0.1251	-6.9968E-05	-0.50068	-0.00028003	-0.62577	-0.00035	559.3032691581078	46.341	1.0678	46.392	46.031	47.099	0.051395					75	29	4	0	0	0	0.2508	2	4523	4502;4523		82.241	33.74	1	6632200			67578	2394	47476	47546	73235;73236	73236					0.03912530363277256
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.303655	1116.59276	-0.026808	-1.4994E-05	-0.15384	-8.6045E-05	-0.18065	-0.00010104	559.3029247108277	46.314	0.35786	46.218	46.115	46.473	-0.096649	-0.087832	2.6344E-05	NaN	107.01	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543390			67579	2394	47476	47546							0.03912530363277256
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.303655	1116.59276	-0.13942	-7.7979E-05	-3.009	-0.0016829	-3.1484	-0.0017609	559.3007319063155	46.643	0.55853	46.382	46.044	46.603	-0.26118	0.076421	-0.0031674	NaN	107.01	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733770			67580	2394	47476	47546							0.03912530363277256
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.303655	1116.59276	-0.83023	-0.00046435	-0.54292	-0.00030366	-1.3732	-0.00076801	559.302812657351	46.4	0.46728	46.198	46.005	46.472	-0.20226	-0.10757	-0.00040888	NaN	107.01	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863630			67581	2394	47476	47546							0.03912530363277256
RLYEFIVRHFL	11	Unmodified	_RLYEFIVRHFL_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.794189453125	3	498.285628	1491.83505	-0.20154	-0.00010042	3.9406	0.0019635	3.7391	0.0018631	498.2874973523031	17.348	0.55155	17.141	16.913	17.464	-0.20669					15	10	2	0	0	0	0.024886	1	181	181		10.104	0.45776	1	65780			67582	8726	47477	47547	73237	73237					0.10880980439264931
RLYGSYDCLP	10	Unmodified	_RLYGSYDCLP_					0	0	0			REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.8016967773438	2	593.781699	1185.54884	-1.2003	-0.00071273	-4.3987	-0.0026118	-5.599	-0.0033246	593.779703057385	35.838	0.10708	35.633	35.544	35.651	-0.20518					4	2	2	0	0	0	0.03519	1	2747	2747		26.693	0	1	251500	+		67583	22213	47478	47548	73238	73238					-0.03650822125382547
RLYHAVFH	8	Unmodified	_RLYHAVFH_					0	0	0			REV__MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant	REV__MYO19|p.K923Vfs*12|1|0.2|ENSG00000278259|chr17:36496396-36496397|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8128662109375	2	521.782693	1041.55083	-0.29349	-0.00015314	-3.9485	-0.0020603	-4.242	-0.0022134	521.7803120891011	41.978	0.39467	41.978	41.793	42.187	0					16	11	2	0	0	0	0.027866	1	3797	3797		28.254	6.5519	1	181690	+		67584	29215	47479	47549	73239	73239					0.03172019465409903
RLYLRAAH	8	Unmodified	_RLYLRAAH_					0	0	0		ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7690734863281	2	500.295968	998.577383	-0.59959	-0.00029997	2.041	0.0010211	1.4415	0.00072115	500.7999441273266	39.38	0.33367	39.157	38.891	39.225	-0.22311					13	8	2	0	0	0	0.027866	1	3303	3303		44.531	16.277	1	65010			67585	11193	47480	47550	73240	73240					0.07803708356732386
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.8112182617188	2	552.811648	1103.60874	0.14515	8.0239E-05	-0.62323	-0.00034453	-0.47809	-0.00026429	552.8113457247799	51.479	1.6078	51.479	51.143	52.75	0					123	43	5	0	0	0	0.012965	5	5456	5435;5444;5456;5468;5480		172.03	61.911	1	22797000			67586	2014	47481	47551	73241;73242;73243;73244;73245	73243					0.061082366001983246
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8114013671875	2	552.811648	1103.60874	-0.96402	-0.00053292	0.31325	0.00017317	-0.65077	-0.00035975	552.8118295048381	51.642	1.6787	51.494	51.157	52.835	-0.14735					125	45	5	0	0	0	0.01471	5	5438	5438;5449;5462;5474;5487		187.63	65.457	1	26293000			67587	2014	47481	47551	73246;73247;73248;73249;73250	73246					0.061082366001983246
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8109741210938	2	552.811648	1103.60874	-1.1269	-0.00062294	0.50141	0.00027718	-0.62545	-0.00034576	552.8119575908728	51.34	1.7438	51.427	51.077	52.821	0.087006					126	46	5	0	0	0	0.012965	5	5369	5344;5356;5369;5381;5394		172.03	61.911	1	21473000			67588	2014	47481	47551	73251;73252;73253;73254;73255	73253					0.061082366001983246
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.811648	1103.60874	0.71641	0.00039604	-0.83621	-0.00046227	-0.1198	-6.6229E-05	552.8111482559482	51.48	0.30566	51.368	51.169	51.475	-0.11163	-0.070976	-0.0008758	NaN	172.03	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230400			67589	2014	47481	47551							0.061082366001983246
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.811648	1103.60874	-1.3995	-0.00077368	0.99566	0.00055041	-0.40388	-0.00022327	553.3134490161216	51.742	0.48289	51.473	51.242	51.725	-0.26903	0.034059	0.0011496	NaN	172.03	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348510			67590	2014	47481	47551							0.061082366001983246
RLYQGINQL	9	Unmodified	_RLYQGINQL_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.811648	1103.60874	0.91483	0.00050573	-1.1204	-0.00061939	-0.20561	-0.00011366	552.8111155991508	51.578	0.42135	51.394	51.14	51.561	-0.18404	-0.0457	-0.00119	NaN	172.03	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288040			67591	2014	47481	47551							0.061082366001983246
RLYQLLNL	8	Unmodified	_RLYQLLNL_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.272216796875	2	516.813659	1031.61277	-1.1885	-0.00061426	3.9368	0.0020346	2.7483	0.0014203	516.815078609473	39.807	0.21989	39.695	39.534	39.754	-0.11223					7	5	2	0	0	0	0.027866	1	3424	3424		24.203	0	1	44749			67592	2119	47482	47552	73256	73256					0.09822326093899392
RLYRKEHL	8	Unmodified	_RLYRKEHL_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.8448486328125	2	557.827632	1113.64071	-0.37314	-0.00020815	-3.7836	-0.0021106	-4.1568	-0.0023188	557.824767381029	54.304	0.31713	54.304	54.144	54.461	0					11	8	2	0	0	0	0.027866	1	5931	5931		52.299	21.796	1	86220	+		67593	27603	47483	47553	73257	73257					0.0884364907399231
RLYRKEHL	8	Unmodified	_RLYRKEHL_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.827632	1113.64071	-0.71815	-0.00040061	-7.0284	-0.0039206	-7.7465	-0.0043212	557.8233595102474	54.303	0.43495	54.167	53.928	54.363	-0.13617	-0.026134	6.9736E-05	NaN	62.978	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161310	+		67594	27603	47483	47553							0.0884364907399231
RLYRKEHL	8	Unmodified	_RLYRKEHL_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.827632	1113.64071	-0.038788	-2.1637E-05	-8.0445	-0.0044875	-8.0833	-0.0045091	557.8229605539954	54.357	0.52996	54.112	53.95	54.479	-0.2453	-0.081423	-0.001064	NaN	62.978	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137570	+		67595	27603	47483	47553							0.0884364907399231
RLYRKEHL	8	Unmodified	_RLYRKEHL_					0	0	0			REV__ENSG00000183751|ENST00000568546|TBL3	REV__ENSG00000183751|ENST00000568546|TBL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.827632	1113.64071	0.2315	0.00012913	-7.8464	-0.0043769	-7.6149	-0.0042478	557.8229772724726	54.397	0.29729	54.191	53.981	54.279	-0.20613	-0.0028026	-0.00084288	NaN	62.978	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219470	+		67596	27603	47483	47553							0.0884364907399231
RLYRRRWTALR	11	Unmodified	_RLYRRRWTALR_					0	0	0			REV__ENSG00000284188|ENST00000640271|unknown	REV__ENSG00000284188|ENST00000640271|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.3096923828125	3	516.31117	1545.91168	-0.31762	-0.00016399	-1.7165	-0.00088627	-2.0342	-0.0010503	516.3101240914639	103.03	1.2559	103.02	102.59	103.85	-0.0046082					53	30	3	0	0	0	0.024898	1	13216	13216		3.2113	0	1	280770	+		67597	29252	47484	47554	73258	73258					0.1605621677911131
RLYSVSYLL	9	Unmodified	_RLYSVSYLL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.3182983398438	2	557.318774	1112.623	0.12303	6.8568E-05	-0.73224	-0.00040809	-0.60921	-0.00033953	557.318306226657	69.604	0.84265	69.604	69.238	70.081	0					72	21	5	0	0	0	0.086035	4	8406	8380;8393;8406;8418		115.49	27.74	1	9046200			67598	9935;15443	47485	47555	73259;73260;73261;73262	73261					0.07118889028470221
RLYSVSYLL	9	Unmodified	_RLYSVSYLL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.318359375	2	557.318774	1112.623	0.41025	0.00022864	-1.0594	-0.00059044	-0.64918	-0.0003618	557.3181335867368	69.96	0.68952	69.667	69.348	70.038	-0.29291					68	16	5	0	0	0	0.11092	5	8443	8393;8405;8418;8430;8443		108.09	40.594	1	8500500			67599	9935;15443	47485	47555	73263;73264;73265;73266;73267	73267					0.07118889028470221
RLYSVSYLL	9	Unmodified	_RLYSVSYLL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.318359375	2	557.318774	1112.623	-0.13902	-7.7481E-05	-1.9446	-0.0010837	-2.0836	-0.0011612	557.3174457265237	69.763	0.97316	69.775	69.131	70.104	0.012421					87	24	5	0	0	0	0.16638	4	8322	8322;8333;8345;8357		95.815	47.9	1	9234900			67600	9935;15443	47485	47555	73268;73269;73270;73271	73268					0.07118889028470221
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.32666015625	2	552.326599	1102.63865	-0.63533	-0.00035091	0.71629	0.00039562	0.080959	4.4716E-05	552.3269107358526	65	0.5749	65.038	64.78	65.355	0.037384					43	15	4	0	0	0	0.53979	1	7599	7599		56.721	5.3856	1	1663500			67601	18235	47486	47556	73272	73272					0.09143175545523263
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.326599	1102.63865	-1.2133	-0.00067013	1.2664	0.00069946	0.053101	2.9329E-05	552.3272312878119	64.973	0.53442	64.973	64.725	65.26	0	-0.045178	0.00024981	NaN	56.721	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1797600			67602	18235	47486	47556							0.09143175545523263
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.326599	1102.63865	-0.51385	-0.00028381	0.76267	0.00042124	0.24882	0.00013743	552.3269666376071	65.232	0.40586	64.997	64.808	65.214	-0.2345	-0.021193	-0.00030661	NaN	56.721	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208460			67603	18235	47486	47556							0.09143175545523263
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.326599	1102.63865	-1.3308	-0.00073503	0.70708	0.00039054	-0.62371	-0.00034449	552.3269084590071	65.257	0.44849	65.054	64.778	65.226	-0.20254	0.035939	-0.00036803	NaN	56.721	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282640			67604	18235	47486	47556							0.09143175545523263
RLYTEPLLV	9	Unmodified	_RLYTEPLLV_					0	0	0		nc|ENSG00000124155|Q969N2-5|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	nc|ENSG00000124155|Q969N2-5|PIGT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.326599	1102.63865	-0.60311	-0.00033311	0.57288	0.00031642	-0.030231	-1.6697E-05	552.3267841144158	65.263	0.44653	65.012	64.783	65.229	-0.25112	-0.0067906	-0.00051627	NaN	56.721	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202400			67605	18235	47486	47556							0.09143175545523263
RLYTGMHTV	9	Oxidation (M)	_RLYTGM(Oxidation (M))HTV_		RLYTGM(1)HTV		RLYTGM(110)HTV	0	0	1		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.2782592773438	2	547.276583	1092.53861	-1.6761	-0.0009173	3.9263	0.0021488	2.2502	0.0012315	547.2787205164086	29.171	1.1581	29.171	28.778	29.936	0					87	28	4	0	0	0	0.11092	5	1752	1742;1752;1764;1777;1790		108.09	47.969	1	11876000			67606	7033	47487	47557	73273;73274;73275;73276;73277	73274		294			-0.003953850599373254
RLYTGMHTV	9	Oxidation (M)	_RLYTGM(Oxidation (M))HTV_		RLYTGM(1)HTV		RLYTGM(100)HTV	0	0	1		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.2760620117188	2	547.276583	1092.53861	-1.4898	-0.00081531	1.1367	0.00062208	-0.35307	-0.00019323	547.2771932535435	30.72	3.7101	30.72	29.611	33.321	0					193	92	4	0	0	0	0.12602	6	1998	1951;1974;1986;1998;2009;2023		104.75	38.317	1	3598800			67607	7033	47487	47557	73278;73279;73280;73281;73282;73283	73281		294			-0.003953850599373254
RLYTGMHTV	9	Oxidation (M)	_RLYTGM(Oxidation (M))HTV_		RLYTGM(1)HTV		RLYTGM(100)HTV	0	0	1		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.27880859375	2	547.276583	1092.53861	-1.1226	-0.00061439	3.126	0.0017108	2.0034	0.0010964	547.2782242835084	29.146	1.079	29.149	28.796	29.875	0.0031376					92	26	5	0	0	0	0.12602	5	1762	1726;1736;1748;1762;1775		104.75	36.474	1	12012000			67608	7033	47487	47557	73284;73285;73286;73287;73288	73287		294			-0.003953850599373254
RLYTGMHTV	9	Oxidation (M)	_RLYTGM(Oxidation (M))HTV_		RLYTGM(1)HTV		RLYTGM(74)HTV	0	0	1		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.2762451171875	2	547.276583	1092.53861	-1.0009	-0.00054777	0.71726	0.00039254	-0.28364	-0.00015523	547.2769545172373	30.718	3.6536	30.727	29.637	33.29	0.0086689					188	91	5	0	0	0	0.31037	4	1970	1937;1948;1970;2009		74.255	19.479	1	3706500			67609	7033	47487	47557	73289;73290;73291;73292	73291		294			-0.003953850599373254
RLYTGMHTV	9	Oxidation (M)	_RLYTGM(Oxidation (M))HTV_		RLYTGM(1)HTV		RLYTGM(120)HTV	0	0	1		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.279296875	2	547.276583	1092.53861	-0.80001	-0.00043783	2.7771	0.0015198	1.9771	0.001082	547.2780627688246	28.881	1.0354	28.962	28.574	29.61	0.080812					89	25	5	0	0	0	0.077175	4	1672	1652;1660;1672;1684		118.74	41.425	1	12053000			67610	7033	47487	47557	73293;73294;73295;73296	73295		294			-0.003953850599373254
RLYTGMHTV	9	Oxidation (M)	_RLYTGM(Oxidation (M))HTV_		RLYTGM(1)HTV		RLYTGM(110)HTV	0	0	1		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.2763061523438	2	547.276583	1092.53861	-1.2559	-0.0006873	1.0064	0.0005508	-0.24942	-0.0001365	547.2771449491971	30.547	4.1876	30.621	29.523	33.711	0.074314					244	105	4	0	0	0	0.11092	3	1913	1891;1913;1925		108.09	39.469	1	4201100			67611	7033	47487	47557	73297;73298;73299	73298		294			-0.003953850599373254
RLYTGMHTV	9	Unmodified	_RLYTGMHTV_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.27880859375	2	539.279126	1076.5437	-1.4136	-0.00076232	0.71066	0.00038324	-0.70293	-0.00037907	539.27943360872	35.944	2.2143	35.944	35.129	37.343	0					142	59	6	0	0	0	0.047345	3	2807	2795;2807;2820		129.68	32.867	1	13283000			67612	7033	47487	47558	73300;73301;73302	73301					0.008489188026715055
RLYTGMHTV	9	Unmodified	_RLYTGMHTV_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.27880859375	2	539.279126	1076.5437	-1.1446	-0.00061724	0.34322	0.00018509	-0.80133	-0.00043214	539.279377308889	35.907	2.2309	35.951	35.381	37.612	0.044056					145	59	7	0	0	0	0.19099	4	2746	2722;2734;2746;2761		90.37	15.811	1	11270000			67613	7033	47487	47558	73303;73304;73305;73306	73305					0.008489188026715055
RLYTMKTS	8	Unmodified	_RLYTMKTS_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2720947265625	2	500.268227	998.521901	-0.72105	-0.00036072	2.8989	0.0014502	2.1778	0.0010895	500.770232839716	39.219	1.6566	39.054	38.659	40.316	-0.16459					129	44	6	0	0	0	0.87148	1	3347	3347		53.351	10.877	1	26558000	+		67614	24494	47488	47559	73307	73307					0.02258114054120597
RLYTMKTS	8	Unmodified	_RLYTMKTS_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.2721252441406	2	500.268227	998.521901	-0.37619	-0.00018819	2.4715	0.0012364	2.0953	0.0010482	500.7700404947614	39.334	1.6824	39.108	38.736	40.419	-0.2257					126	44	6	0	0	0	0.74904	2	3340	3327;3340		63.306	5.495	1	27495000	+		67615	24494	47488	47559	73308;73309	73309					0.02258114054120597
RMAGLAEHLI	10	Unmodified	_RMAGLAEHLI_					0	0	0			REV__ENST00000585629.1_1_18:58330357-58331131:+|nuORF	REV__ENST00000585629.1_1_18:58330357-58331131:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7691650390625	2	555.808051	1109.60155	-0.83989	-0.00046682	1.4407	0.00080074	0.60078	0.00033392	555.8091424403234	38.103	0.29312	37.882	37.761	38.054	-0.22149					14	8	3	0	0	0	0.03519	1	3105	3105		47.657	8.8512	1	458670	+		67616	35580	47489	47560	73310	73310					0.05113180728108091
RMALYRLDL	9	Unmodified	_RMALYRLDL_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8244018554688	2	575.823701	1149.63285	-1.1962	-0.00068883	0.71493	0.00041167	-0.48132	-0.00027715	575.8240145752235	44.388	0.67838	44.243	43.883	44.561	-0.14471					68	19	4	0	0	0	0.31037	1	4196	4196		74.255	12.148	1	5484300	+		67617	20675	47490	47561	73311	73311					0.06401753762202134
RMFAPTKTW	9	Unmodified	_RMFAPTKTW_					0	0	0		ENST00000566622.5_1_15:66794044-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENSG00000174444|ENST00000307961|RPL4;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	569.2941284179688	2	569.297319	1136.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.268	1	45.057	44.557	45.557	-0.21109								0	0	0	0.3606	1	4265	4265		64.207	13.015	1				67618	8468	47491	47562	73312	73312					0.01725795699394439
RMFLENETW	9	Unmodified	_RMFLENETW_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2872924804688	2	613.287148	1224.55974	-1.4154	-0.00086803	1.8335	0.0011244	0.4181	0.00025642	613.288140147636	65.632	0.74263	65.39	65.085	65.828	-0.24145					49	17	4	0	0	0	0.065	2	7493	7493;7511		123.21	24.626	1	1470900			67619	743	47492	47563	73313;73314	73313					-0.043554197510729864
RMFLENETW	9	Unmodified	_RMFLENETW_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.2869873046875	2	613.287148	1224.55974	-1.5541	-0.00095308	1.7614	0.0010802	0.20734	0.00012716	613.2879779329044	65.551	0.82183	65.338	65.052	65.874	-0.21327					50	19	4	0	0	0	0.065	2	7500	7489;7500		123.21	29.357	1	1606600			67620	743	47492	47563	73315;73316	73316					-0.043554197510729864
RMFLENETW	9	Unmodified	_RMFLENETW_					0	0	0		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2877807617188	2	613.287148	1224.55974	-0.69715	-0.00042755	0.74129	0.00045462	0.044141	2.7071E-05	613.2874824846396	65.615	0.97888	65.364	65.027	66.006	-0.25112					49	23	3	0	0	0	0.14087	2	7488	7488;7501		101.46	16.1	1	1481500			67621	743	47492	47563	73317;73318	73317					-0.043554197510729864
RMFLENETW	9	Oxidation (M)	_RM(Oxidation (M))FLENETW_		RM(1)FLENETW		RM(83)FLENETW	0	0	1		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.2823486328125	2	621.284605	1240.55466	0.22791	0.00014159	0.39759	0.00024702	0.6255	0.00038861	621.2848112448195	58.194	0.56929	57.96	57.78	58.349	-0.23363					16	13	2	0	0	0	0.247	1	6375	6375		82.75	29.662	1	686700			67622	743	47492	47564	73319	73319		20			-0.055997236136818174
RMFLENETW	9	Oxidation (M)	_RM(Oxidation (M))FLENETW_					0	0	1		nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF;ENST00000441602.5_1_7:92883193-92979232:+|nuORF	nc|ENSG00000004766|Q96JG6-3|VPS50	nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	621.284605	1240.55466	-1.0132	-0.0006295	1.444	0.00089714	0.43078	0.00026764	621.2852322035538	57.998	0.35267	57.808	57.56	57.913	-0.19018	-0.076339	0.00086251	NaN	82.75	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360400			67623	743	47492	47564				20			-0.055997236136818174
RMGPLPPPP	9	Oxidation (M)	_RM(Oxidation (M))GPLPPPP_		RM(1)GPLPPPP		RM(41)GPLPPPP	0	0	1			REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-6|DIAPH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2641296386719	2	489.265487	976.516422	0.046903	2.2948E-05	-4.0838	-0.001998	-4.0369	-0.0019751	489.2633154118654	18.702	1.4266	18.57	18.056	19.482	-0.13147					61	28	3	0	0	0	0.78069	1	314	314		40.573	7.057	1	143490	+		67624	36714	47493	47565	73320	73320		972			0.02722435262307954
RMIDIQTRM	9	Oxidation (M)	_RMIDIQTRM(Oxidation (M))_		RMIDIQTRM(1)		RM(-98)IDIQTRM(98)	0	0	1		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.3024291992188	2	590.302275	1178.59	-0.15787	-9.3192E-05	-0.95901	-0.00056611	-1.1169	-0.0006593	590.3022800793925	37.092	0.97025	37.092	36.764	37.735	0					82	25	5	0	0	0	0.10464	2	2997	2985;2997		109.48	35.223	2	2647900			67625	1452	47494	47566	73321;73322	73322		47			0.00784615642442077
RMIDIQTRM	9	Oxidation (M)	_RMIDIQTRM(Oxidation (M))_		RMIDIQTRM(1)		RM(-150)IDIQTRM(150)	0	0	1		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.3026123046875	2	590.302275	1178.59	-0.77104	-0.00045515	-0.23292	-0.00013749	-1.004	-0.00059264	590.3026921311737	36.921	1.0083	36.858	36.548	37.556	-0.063385					90	26	5	0	0	0	0.013065	2	2950	2950;2962		171.53	67.475	2	2813000			67626	1452	47494	47566	73323;73324	73323		47			0.00784615642442077
RMIDIQTRM	9	Oxidation (M)	_RMIDIQTRM(Oxidation (M))_		RMIDIQTRM(1)		RM(-130)IDIQTRM(130)	0	0	1		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.3023681640625	2	590.302275	1178.59	0.38967	0.00023002	-1.1014	-0.00065017	-0.71174	-0.00042014	590.3019889240667	37.083	1.1671	37.115	36.756	37.923	0.032269					102	30	5	0	0	0	0.056725	2	2936	2924;2936		126.24	64.551	2	2389300			67627	1452	47494	47566	73325;73326	73326		47			0.00784615642442077
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.3045654296875	2	582.304818	1162.59508	-1.3503	-0.00078631	1.697	0.00098815	0.34661	0.00020183	582.3056116043244	45.758	1.065	45.758	45.278	46.343	0					76	30	3	0	0	0	0.016542	2	4480	4480;4491		154.12	36.226	1	3539400			67628	1452	47494	47567	73327;73328	73327					0.02028919505050908
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3040161132812	2	582.304818	1162.59508	-1.4672	-0.00085438	1.8195	0.0010595	0.35226	0.00020512	582.3056601304124	45.855	1.0332	45.704	45.211	46.244	-0.15156					73	29	3	0	0	0	0.013924	2	4475	4475;4487		167.23	48.761	1	2946800			67629	1452	47494	47567	73329;73330	73329					0.02028919505050908
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	582.304818	1162.59508	0.035448	2.0642E-05	0.60107	0.00035001	0.63652	0.00037065	582.3049322335984	45.724	1.0214	45.768	45.279	46.301	0.043877	0.13695	-0.0011614	NaN	167.23	82	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546900			67630	1452	47494	47567							0.02028919505050908
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	582.304818	1162.59508	-0.26863	-0.00015643	1.9656	0.0011446	1.697	0.00098818	582.3056720722922	45.665	0.37953	45.568	45.326	45.706	-0.096649	-0.062746	0.00042774	NaN	167.23	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208890			67631	1452	47494	47567							0.02028919505050908
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	582.304818	1162.59508	-0.88512	-0.00051541	2.4261	0.0014127	1.541	0.00089732	582.3062100291577	45.752	0.41672	45.491	45.249	45.666	-0.26118	-0.14005	0.00096399	NaN	167.23	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205210			67632	1452	47494	47567							0.02028919505050908
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	582.304818	1162.59508	-1.2311	-0.00071688	4.643	0.0027036	3.4119	0.0019868	582.306182777759	45.699	0.41011	45.497	45.259	45.669	-0.20226	-0.13423	0.0035458	NaN	167.23	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186810			67633	1452	47494	47567							0.02028919505050908
RMIILPLVV	9	Unmodified	_RMIILPLVV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4;SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant;ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000115902|ENST00000234256|SLC1A4;SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3460693359375	2	527.34628	1052.67801	-1.1667	-0.00061527	1.1004	0.00058029	-0.066331	-3.4979E-05	527.3467100461838	84.088	0.76423	84.015	83.743	84.507	-0.072769					37	17	3	0	0	0	0.75282	1	10495	10495		42.474	0	1	493120			67634	3499;2655	47495	47568	73331	73331					0.1537760429539503
RMLCSGPPFL	10	Unmodified	_RMLCSGPPFL_					0	0	0			REV__ENST00000375893.6_1_6:31632636-31633398:-|nuORF	REV__ENST00000375893.6_1_6:31632636-31633398:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.8076782226562	2	560.78573	1119.55691	0.23809	0.00013352	2.3158	0.0012986	2.5538	0.0014322	560.7868396303742	57.463	0.38787	57.288	57.072	57.46	-0.1749					15	9	2	0	0	0	0.03519	1	6431	6431		51.335	20.832	1	689340	+		67635	31344	47496	47569	73332	73332					0.0019103359043128876
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(68)LPHAPGV	0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.26837158203125	2	497.268561	992.52257	-0.50113	-0.0002492	-0.17736	-8.8198E-05	-0.6785	-0.0003374	497.26841631396877	36.088	1.7988	36.088	35.687	37.486	0					141	48	4	0	0	0	0.36105	4	2858	2796;2808;2858;2870		68.485	19.043	1	12749000			67636	9897	47497	47570	73333;73334;73335;73336	73335		411			0.026009534938225443
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(58)LPHAPGV	0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2685852050781	2	497.268561	992.52257	-0.95259	-0.0004737	0.14727	7.3233E-05	-0.80532	-0.00040046	497.26859640888404	35.147	1.0325	35.125	34.435	35.468	-0.021767					91	26	4	0	0	0	0.52323	1	2649	2649		57.811	13.694	1	13428000			67637	9897	47497	47570	73337	73337		411			0.026009534938225443
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(80)LPHAPGV	0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2687072753906	2	497.268561	992.52257	-0.95159	-0.0004732	0.31854	0.0001584	-0.63305	-0.0003148	497.2686713115808	35.956	3.1262	35.913	35.405	38.532	-0.042454					203	85	4	0	0	0	0.26797	3	2768	2768;2779;2817		79.939	24.435	1	11825000			67638	9897	47497	47570	73338;73339;73340	73338		411			0.026009534938225443
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(68)LPHAPGV	0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2686767578125	2	497.268561	992.52257	-0.33806	-0.00016811	-0.537	-0.00026703	-0.87506	-0.00043514	497.2682640817893	35.201	1.1879	35.245	34.512	35.699	0.04406					114	30	5	0	0	0	0.36105	2	2627	2627;2662		68.485	12.98	1	12692000			67639	9897	47497	47570	73341;73342	73341		411			0.026009534938225443
RMLPHAPGV	9	Oxidation (M)	_RM(Oxidation (M))LPHAPGV_		RM(1)LPHAPGV		RM(68)LPHAPGV	0	0	1		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2684020996094	2	497.268561	992.52257	-0.35959	-0.00017881	-0.29125	-0.00014483	-0.65083	-0.00032364	497.26837861192877	36.109	3.0502	36.147	35.652	38.702	0.038044					198	83	4	0	0	0	0.36105	3	2796	2710;2784;2796		68.485	26.01	1	12565000			67640	9897	47497	47570	73343;73344;73345	73345		411			0.026009534938225443
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2706298828125	2	489.271104	976.527655	-0.39377	-0.00019266	-1.3636	-0.00066715	-1.7573	-0.00085982	489.270593923878	38.922	1.5173	38.922	38.433	39.951	0					145	41	5	0	0	0	0.29104	2	3301	3265;3301		76.847	8.3619	1	53004000			67641	9897	47497	47571	73346;73347	73347					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2702941894531	2	489.271104	976.527655	-0.59343	-0.00029035	-1.2401	-0.00060675	-1.8335	-0.00089709	489.2706764402166	38.923	2.0896	38.824	37.902	39.991	-0.098755					164	57	5	0	0	0	0.26797	3	3271	3259;3271;3283		79.939	19.645	1	52366000			67642	9897	47497	47571	73348;73349;73350	73349					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.27099609375	2	489.271104	976.527655	-1.1824	-0.00057849	-0.19386	-9.4849E-05	-1.3762	-0.00067334	489.27120220852095	39.189	1.8352	39.213	38.727	40.563	0.023727					150	50	5	0	0	0	0.26797	4	3304	3248;3256;3304;3344		79.939	14.932	1	46415000			67643	9897	47497	47571	73351;73352;73353;73354	73353					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.271240234375	2	489.271104	976.527655	-1.4209	-0.00069522	0.021694	1.0614E-05	-1.3992	-0.0006846	489.2709640692669	38.953	0.98321	38.789	38.396	39.379	-0.16459					67	26	3	0	0	0	0.33184	2	3270	3270;3282		71.378	11.084	1	4550900			67644	9897	47497	47571	73355;73356	73355					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2709045410156	2	489.271104	976.527655	-0.51123	-0.00025013	-0.86296	-0.00042222	-1.3742	-0.00067235	489.2705478181892	39.129	1.1279	38.906	38.415	39.543	-0.22311					71	29	3	0	0	0	0.20304	4	3288	3265;3276;3288;3300		88.643	23.954	1	4339800			67645	9897	47497	47571	73357;73358;73359;73360	73359					0.03845257356431375
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF	nc|ENSG00000196591|Q92769-3|HDAC2	nc|ENSG00000196591|Q92769-3|HDAC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.271728515625	2	489.271104	976.527655	0.17511	8.5677E-05	-1.5193	-0.00074335	-1.3442	-0.00065767	489.27023488377347	39.102	1.5299	38.876	38.443	39.973	-0.2257					82	40	3	0	0	0	0.24299	4	3287	3252;3261;3273;3287		83.287	27.003	1	4086000			67646	9897	47497	47571	73361;73362;73363;73364	73364					0.03845257356431375
RMNPNSPSI	9	Unmodified	_RMNPNSPSI_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2526550292969	2	508.253108	1014.49166	0.21934	0.00011148	-0.70444	-0.00035804	-0.4851	-0.00024656	508.2525751513235	36.743	1.368	36.743	36.334	37.702	0					71	36	3	0	0	0	0.016758	2	2941	2941;2953		153.04	48.289	1	3814500			67647	2234	47498	47572	73365;73366	73365					-0.015002446110770506
RMNPNSPSI	9	Unmodified	_RMNPNSPSI_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2525329589844	2	508.253108	1014.49166	-0.45487	-0.00023119	-0.18698	-9.5032E-05	-0.64185	-0.00032622	508.2528609823745	36.591	1.5043	36.549	36.172	37.676	-0.042454					73	40	3	0	0	0	0.014034	2	2913	2900;2913		166.68	49.775	1	3998700			67648	2234	47498	47572	73367;73368	73368					-0.015002446110770506
RMNPNSPSI	9	Unmodified	_RMNPNSPSI_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2529296875	2	508.253108	1014.49166	-0.43312	-0.00022013	-0.031686	-1.6104E-05	-0.46481	-0.00023624	508.2529070756766	36.704	1.0453	36.742	36.374	37.419	0.038044					59	27	3	0	0	0	0.014034	2	2879	2879;2891		166.68	61.932	1	3591900			67649	2234	47498	47572	73369;73370	73369					-0.015002446110770506
RMNPNSPSI	9	Oxidation (M)	_RM(Oxidation (M))NPNSPSI_		RM(1)NPNSPSI		RM(120)NPNSPSI	0	0	1		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.25	2	516.250566	1030.48658	-1.3263	-0.00068472	1.6492	0.00085139	0.32286	0.00016668	516.2514123887566	30.334	0.99587	30.408	29.838	30.834	0.074314					49	23	3	0	0	0	0.086035	1	1892	1892		115.49	36.043	1	1423800			67650	2234	47498	47573	73371	73371		86			-0.027445484736972503
RMPPRWPH	8	Unmodified	_RMPPRWPH_					0	0	0			REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF	REV__ENST00000392346.6_2_17:80092036-80109722:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7835083007812	2	538.78217	1075.54979	-1.7956	-0.00096744	2.8388	0.0015295	1.0432	0.00056205	538.7835965018162	29.592	0.72627	29.592	29.37	30.096	0					29	17	2	0	0	0	0.65272	1	1826	1826		71.378	4.9486	1	1351100	+		67651	31602	47499	47574	73372	73372					0.015034818248523152
RMRRRNRKTRR	11	Unmodified	_RMRRRNRKTRR_					0	0	0		ENSG00000174132|ENST00000312637|FAM174A	ENSG00000174132|ENST00000312637|FAM174A	ENSG00000174132|ENST00000312637|FAM174A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7793579101562	3	529.322075	1584.9444	1.1972	0.0006337	2.7756	0.0014692	3.9728	0.0021029	529.323493980833	17.287	0.252	17.133	17.007	17.259	-0.15403					6	4	2	0	0	0	0.024894	1	163	163		8.4073	5.5555	1	16571			67652	8444	47500	47575	73373	73373					0.17532100630296554
RMSCTMWITF	10	Unmodified	_RMSCTMWITF_					0	0	0		ENST00000452015.8_3_14:23767740-23768628:-|nuORF	ENST00000452015.8_3_14:23767740-23768628:-|nuORF	ENST00000452015.8_3_14:23767740-23768628:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.18206787109375	3	425.860945	1274.56101	-0.19321	-8.2281E-05	3.4106	0.0014524	3.2174	0.0013701	425.8629655851288	34.738	0.48375	34.551	34.117	34.601	-0.18675					14	11	2	0	0	0	0.03519	1	2553	2553		50.034	17.999	1	52868			67653	14530	47501	47576	73374	73374					-0.06529244978196402
RMSQVRAGHRA	11	Unmodified	_RMSQVRAGHRA_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.5622863769531	3	423.563278	1267.66801	1.4103	0.00059734	-4.1237	-0.0017466	-2.7134	-0.0011493	423.56156529534127	17.487	2.1789	17.333	17.159	19.338	-0.15403					69	43	4	0	0	0	1.0259	1	184	184		31.068	0.49928	1	1152400	+		67654	37079	47502	47577	73375	73375					0.044878093427314525
RMVDVPIVT	9	Unmodified	_RMVDVPIVT_					0	0	0			REV__ENST00000460192.5_1_1:8022845-8029412:+|nuORF	REV__ENST00000460192.5_1_1:8022845-8029412:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.27734375	2	515.291702	1028.56885	-0.5669	-0.00029212	2.9031	0.0014959	2.3362	0.0012038	515.2927128663489	28.522	0.16581	28.518	28.416	28.582	-0.0042019					5	3	2	0	0	0	0.024539	1	1659	1659		20.947	5.3051	1	31200	+		67655	22274	47503	47578	73376	73376					0.05570973605267682
RMVWSAAHTL	10	Unmodified	_RMVWSAAHTL_					0	0	0		ENST00000528048.5_2_11:111957606-111965694:+|nuORF;ENST00000528182.5_2_11:111957606-111959624:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	586.8054809570312	2	586.305675	1170.5968	-1.4788	-0.00086702	0.16764	9.8289E-05	-1.3111	-0.00076873	586.3039708893658	76.039	1.0804	75.801	75.518	76.599	-0.23825					84	27	5	0	0	0	0.77808	1	9336	9336		62.107	3.8775	1	2271500			67656	16175	47504	47579	73377	73377					0.018322965853485584
RMVWSAAHTL	10	Unmodified	_RMVWSAAHTL_					0	0	0		ENST00000528048.5_2_11:111957606-111965694:+|nuORF;ENST00000528182.5_2_11:111957606-111959624:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	586.305675	1170.5968	0.99066	0.00058083	-2.4782	-0.001453	-1.4875	-0.00087216	586.3025848093674	75.83	1.0712	75.841	75.54	76.611	0.011635	0.01748	-0.0021078	NaN	62.107	79	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2651100			67657	16175	47504	47579							0.018322965853485584
RNAAAAADLLP	11	Unmodified	_RNAAAAADLLP_					0	0	0			REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.8004150390625	2	541.80128	1081.58801	3.4583	0.0018737	-4.295	-0.002327	-0.83671	-0.00045333	541.7987985225888	17.696	0.44264	17.446	17.276	17.719	-0.25049					18	8	3	0	0	0	1.0521	1	186	186		24.519	0	1	153250	+		67658	31162	47505	47580	73378	73378					0.05047646220509705
RNAGEVRRL	9	Unmodified	_RNAGEVRRL_					0	0	0			REV__ENST00000398665.7_1_19:2194545-2202713:+|nuORF	REV__ENST00000398665.7_1_19:2194545-2202713:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.812255859375	2	535.812513	1069.61047	-0.49681	-0.0002662	0.35099	0.00018806	-0.14582	-7.8131E-05	535.812623454194	19.195	0.83573	19.077	18.756	19.591	-0.11872					32	16	4	0	0	0	0.82115	1	371	371		37.812	0	1	215320	+		67659	31807	47506	47581	73379	73379					0.07845290408795336
RNAGGRRG	8	Unmodified	_RNAGGRRG_					0	0	0			REV__ENST00000506578.5_3_6:33739238-33739340:-|nuORF	REV__ENST00000506578.5_3_6:33739238-33739340:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.2564697265625	2	422.236442	842.45833	-0.46448	-0.00019612	-2.5466	-0.0010753	-3.0111	-0.0012714	422.2321221012863	21.871	0.33937	21.665	21.417	21.756	-0.20618					13	6	3	0	0	0	0.027866	1	700	700		25.45	3.7478	1	17722	+		67660	34032	47507	47582	73380	73380					0.030799344518982252
RNAGRCAQV	9	Unmodified	_RNAGRCAQV_					0	0	0			REV__nc|ENSG00000196954|P49662-2|CASP4	REV__nc|ENSG00000196954|P49662-2|CASP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7517395019531	2	487.751067	973.487581	-0.42406	-0.00020684	2.8349	0.0013827	2.4108	0.0011759	487.75222325490967	75.491	0.96056	75.246	74.838	75.799	-0.24455					65	25	4	0	0	0	0.22754	1	9241	9241		85.359	3.119	1	1706800	+		67661	28245	47508	47583	73381	73381					-0.00022289314142653893
RNAIRVNPR	9	Unmodified	_RNAIRVNPR_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.328125	2	548.328331	1094.64211	2.9213	0.0016019	-3.1956	-0.0017522	-0.27421	-0.00015036	548.3264245042054	17.961	0.43992	17.961	17.746	18.186	0					24	8	4	0	0	0	0.72875	1	222	222		44.117	1.7207	1	364590			67662	751	47509	47584	73382	73382					0.09857283162727981
RNAIRVNPR	9	Unmodified	_RNAIRVNPR_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	548.328331	1094.64211	0.78934	0.00043282	2.6871	0.0014734	3.4765	0.0019063	548.3297159982994	18.117	0.34392	17.96	17.755	18.099	-0.15637	-0.084708	0.0054243	NaN	44.117	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24589			67663	751	47509	47584							0.09857283162727981
RNAISFGSV	9	Unmodified	_RNAISFGSV_					0	0	0			REV__nc|ENSG00000163814|Q9H5V8-3|CDCP1	REV__nc|ENSG00000163814|Q9H5V8-3|CDCP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.3003845214844	2	475.756341	949.498129	-0.22715	-0.00010807	0.51199	0.00024358	0.28485	0.00013552	475.75664278742664	39.106	0.95618	39.008	38.591	39.547	-0.098755					39	26	3	0	0	0	0.024447	1	3389	3389		49.442	10.635	1	413870	+		67664	25639	47510	47585	73383	73383					0.021360166119507085
RNASVTHSL	9	Unmodified	_RNASVTHSL_					0	0	0		ENST00000440114.1_1_2:198362106-198364543:-|nuORF	ENST00000440114.1_1_2:198362106-198364543:-|nuORF	ENST00000440114.1_1_2:198362106-198364543:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.78570556640625	2	492.764697	983.514842	0.010472	5.1603E-06	3.1361	0.0015453	3.1465	0.0015505	492.76605618656583	78.037	1.9157	77.882	77.146	79.062	-0.15591					110	44	3	0	0	0	0.024381	1	9286	9286		45.952	6.9305	1	855930			67665	14345	47511	47586	73384	73384					0.022425174979161966
RNAVLALAS	9	Unmodified	_RNAVLALAS_					0	0	0		ENST00000395029.5_1_5:133480490-133481991:+|nuORF	ENST00000395029.5_1_5:133480490-133481991:+|nuORF	ENST00000395029.5_1_5:133480490-133481991:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.28240966796875	2	457.774534	913.534515	-0.26566	-0.00012161	2.6218	0.0012002	2.3561	0.0010786	457.77444288445525	34.834	0.36178	34.884	34.8	35.162	0.050251					16	9	3	0	0	0	0.023817	1	2567	2567		71.296	32.49	1	265900			67666	13501	47512	47587	73385	73385					0.07428893508642886
RNAVLALAS	9	Unmodified	_RNAVLALAS_					0	0	0		ENST00000395029.5_1_5:133480490-133481991:+|nuORF	ENST00000395029.5_1_5:133480490-133481991:+|nuORF	ENST00000395029.5_1_5:133480490-133481991:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.774534	913.534515	-0.41643	-0.00019063	0.5002	0.00022898	0.083769	3.8347E-05	457.77467542958317	34.918	0.55802	34.705	34.519	35.077	-0.21246	-0.058536	2.3136E-05	NaN	71.296	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247400			67667	13501	47512	47587							0.07428893508642886
RNAVSMIRNIN	11	Unmodified	_RNAVSMIRNIN_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO	REV__nc|ENSG00000038382|O75962-5|TRIO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.90240478515625	3	429.903189	1286.68774	1.0779	0.00046339	-3.046	-0.0013095	-1.9681	-0.00084609	429.90179664472663	110.37	0.82458	110.37	110.08	110.91	0					96	25	5	0	0	0	1.0292	1	14038	14038		21.032	0	1	1108500	+		67668	20078	47513	47588	73386	73386					0.055861405628320426
RNAVSMIRNIN	11	Unmodified	_RNAVSMIRNIN_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO	REV__nc|ENSG00000038382|O75962-5|TRIO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.90228271484375	3	429.903189	1286.68774	0.17665	7.5944E-05	-2.1782	-0.00093641	-2.0015	-0.00086047	429.9021257633563	110.35	0.86909	110.34	110.08	110.95	-0.0094986					82	33	4	0	0	0	1.0521	1	13947	13947		21.78	0.74819	1	940620	+		67669	20078	47513	47588	73387	73387					0.055861405628320426
RNCVDFPCV	9	Unmodified	_RNCVDFPCV_					0	0	0			REV__ENSG00000230797|ENST00000429584|YY2	REV__ENSG00000230797|ENST00000429584|YY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2781372070312	2	526.736237	1051.45792	0.31159	0.00016413	-2.9449	-0.0015512	-2.6333	-0.0013871	527.2368005909717	84.519	0.37678	84.315	84.167	84.544	-0.20329					11	8	2	0	0	0	0.024506	1	10241	10241		38.806	10.924	1	62670	+		67670	28895	47514	47589	73388	73388					-0.06574989374485085
RNCVDFPCV	9	Unmodified	_RNCVDFPCV_					0	0	0			REV__ENSG00000230797|ENST00000429584|YY2	REV__ENSG00000230797|ENST00000429584|YY2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.736237	1051.45792	0.56122	0.00029562	-2.1909	-0.001154	-1.6297	-0.0008584	526.7339802903907	84.501	0.38098	84.342	84.149	84.53	-0.15869	0.012678	0.0013673	NaN	38.806	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68721	+		67671	28895	47514	47589							-0.06574989374485085
RNCVDFPCV	9	Unmodified	_RNCVDFPCV_					0	0	0			REV__ENSG00000230797|ENST00000429584|YY2	REV__ENSG00000230797|ENST00000429584|YY2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.736237	1051.45792	0.52994	0.00027914	-4.0732	-0.0021455	-3.5433	-0.0018664	526.7338237322248	84.468	0.3387	84.331	84.151	84.49	-0.13789	0.0011823	-0.00061572	NaN	38.806	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58175	+		67672	28895	47514	47589							-0.06574989374485085
RNDVSHVV	8	Unmodified	_RNDVSHVV_					0	0	0		nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6	nc|ENSG00000072133|Q9UK32-2|RPS6KA6	nc|ENSG00000072133|Q9UK32-2|RPS6KA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.79034423828125	2	463.246141	924.477728	-1.1254	-0.00052134	-1.578	-0.000731	-2.7034	-0.0012523	463.24528079952535	20.451	0.92068	20.451	19.979	20.9	0					32	18	3	0	0	0	0.027866	1	504	504		42.474	8.9589	1	56279			67673	1467	47515	47590	73389	73389					0.012468459521414843
RNEAYGGILN	10	Unmodified	_RNEAYGGILN_					0	0	0			REV__ENST00000592630.5_1_2:179388144-179462357:+|nuORF	REV__ENST00000592630.5_1_2:179388144-179462357:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.77880859375	2	553.783087	1105.55162	-0.85384	-0.00047284	-3.846	-0.0021299	-4.6999	-0.0026027	553.7805901934024	62.605	0.74159	62.605	62.384	63.126	0					44	18	3	0	0	0	0.66532	1	7281	7281		69.628	7.5202	1	2356700	+		67674	35751	47516	47591	73390	73390					0.003067693238335778
RNEKIASI	8	Unmodified	_RNEKIASI_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.26123046875	2	465.771991	929.529429	-0.06464	-3.0108E-05	0.084139	3.919E-05	0.019499	9.0822E-06	465.77190462315065	22.754	0.50932	22.828	22.559	23.068	0.073954					17	10	2	0	0	0	0.027866	1	758	758		40.778	5.1599	1	109500	+		67675	24143	47517	47592	73391	73391					0.06184589646022687
RNEQYTALP	9	Unmodified	_RNEQYTALP_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8036499023438	2	546.277638	1090.54072	-0.54173	-0.00029593	0.65474	0.00035767	0.11302	6.1738E-05	546.7790464983274	45.206	0.54191	44.954	44.549	45.091	-0.25252					16	13	2	0	0	0	0.024447	1	4245	4245		49.442	14.29	1	206110	+		67676	21057	47518	47593	73392	73392					-0.0009263305048534676
RNERHSYQV	9	Unmodified	_RNERHSYQV_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.2506103515625	2	594.79706	1187.57957	-1.2883	-0.00076627	-3.9485	-0.0023485	-5.2368	-0.0031148	594.7952429276729	48.958	0.28689	48.678	48.538	48.825	-0.27977					10	7	2	0	0	0	0.024427	1	4879	4879		34.173	7.4796	1	96533			67677	8417	47519	47594	73393	73393					-0.006719076961189785
RNERLNGD	8	Unmodified	_RNERLNGD_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.24603271484375	2	487.244129	972.473705	2.0788	0.0010129	2.2663	0.0011042	4.3451	0.0021171	487.24499938763444	23.709	0.59063	23.517	23.248	23.838	-0.19117					41	13	4	0	0	0	0.6248	1	954	954		73.975	19.198	1	708840			67678	9219	47520	47595	73394	73394					-0.013632435415843247
RNFHTFSF	8	Unmodified	_RNFHTFSF_					0	0	0		nc|ENSG00000292343|Q02040-2|AKAP17A;nc|ENSG00000292343|Q02040-3|AKAP17A;ENSG00000197976|ENST00000313871|AKAP17A	nc|ENSG00000292343|Q02040-2|AKAP17A	nc|ENSG00000292343|Q02040-2|AKAP17A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2564697265625	2	528.256508	1054.49846	-0.45698	-0.0002414	0.030067	1.5883E-05	-0.42691	-0.00022552	528.2563184378051	17.348	0.45086	17.141	16.963	17.414	-0.20669					19	8	3	0	0	0	1.0009	1	160	160		37.159	0	1	192770			67679	10076	47521	47596	73395	73395					-0.02660563668200666
RNFTLETIVER	11	Unmodified	_RNFTLETIVER_					0	0	0		ENSG00000152503|ENST00000513154|TRIM36;nc|ENSG00000152503|Q9NQ86|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	ENSG00000152503|ENST00000513154|TRIM36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.9214782714844	3	459.921014	1376.74121	-0.22331	-0.00010271	0.69977	0.00032184	0.47646	0.00021913	459.92134079568535	24.658	0.8666	24.483	24.21	25.077	-0.17484					55	19	4	0	0	0	1.0408	1	1096	1096		27.644	0	1	1471500			67680	6277	47522	47597	73396	73396					0.06791216546298529
RNFVDKRQW	9	Unmodified	_RNFVDKRQW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.891357421875	3	416.891389	1247.65234	-0.22412	-9.3432E-05	-0.14782	-6.1625E-05	-0.37194	-0.00015506	416.8913327621839	33.731	1.1786	33.501	33.154	34.333	-0.23044					74	29	4	0	0	0	0.25614	4	2446	2411;2422;2434;2446		81.525	32.923	1	6554500			67681	5576	47523	47598	73397;73398;73399;73400	73400					0.03841846097316193
RNFVDKRQW	9	Unmodified	_RNFVDKRQW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.8912353515625	3	416.891389	1247.65234	-0.38901	-0.00016218	0.035449	1.4778E-05	-0.35356	-0.0001474	416.89137626572233	33.66	1.1237	33.459	33.209	34.332	-0.20019					74	28	4	0	0	0	0.18694	4	2421	2401;2409;2421;2433		91.265	34.633	1	7810500			67682	5576	47523	47598	73401;73402;73403;73404	73403					0.03841846097316193
RNFVDKRQW	9	Unmodified	_RNFVDKRQW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MSMS	OPSCC_40_ClassI_Rep-3	6	416.8916931152344	3	416.891389	1247.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.474	1	33.308	32.808	33.808	-0.16565								0	0	0	0.1847	1	2373	2373		76.17	26.136	1				67683	5576	47523	47598	73405	73405					0.03841846097316193
RNFVDKRQW	9	Unmodified	_RNFVDKRQW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MSMS	OPSCC_40_ClassI_Rep-3	6	416.8915100097656	3	416.891389	1247.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.638	1	33.472	32.972	33.972	-0.16565								0	0	0	0.32009	1	2398	2398		66.962	6.795	1				67684	5576	47523	47598	73406	73406					0.03841846097316193
RNFVDKRQW	9	Unmodified	_RNFVDKRQW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MSMS	OPSCC_40_ClassI_Rep-3	6	416.8914489746094	3	416.891389	1247.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.72	1	33.545	33.045	34.045	-0.17557								0	0	0	0.12965	1	2411	2411		85.862	20.705	1				67685	5576	47523	47598	73407	73407					0.03841846097316193
RNFVDKRQW	9	Unmodified	_RNFVDKRQW_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MSMS	OPSCC_40_ClassI_Rep-3	6	416.8917541503906	3	416.891389	1247.65234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.811	1	33.636	33.136	34.136	-0.17557								0	0	0	0.13964	1	2425	2425		83.647	42.22	1				67686	5576	47523	47598	73408	73408					0.03841846097316193
RNFYTLSI	8	Unmodified	_RNFYTLSI_					0	0	0		ENSG00000206150|ENST00000382951|RNASE13	ENSG00000206150|ENST00000382951|RNASE13	ENSG00000206150|ENST00000382951|RNASE13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7880554199219	2	507.274367	1012.53418	0.058014	2.9429E-05	3.9455	0.0020015	4.0035	0.0020309	507.77844869229614	49.137	0.17704	49.137	49.072	49.249	0					6	4	2	0	0	0	0.027866	1	5063	5063		60.972	0	1	50112			67687	10464	47524	47599	73409	73409					0.02841473788816984
RNGGGAALL	9	Unmodified	_RNGGGAALL_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.89837646484375	2	414.737951	827.46135	-0.79974	-0.00033168	1.3475	0.00055884	0.54771	0.00022715	414.73834861194905	24.861	0.48843	24.824	24.588	25.076	-0.037378					16	10	2	0	0	0	0.024466	1	1138	1138		33.516	0	1	151630	+		67688	26454	47525	47600	73410	73410					0.04071764786033327
RNGLGAPVRLV	11	Unmodified	_RNGLGAPVRLV_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1;PUM1|p.Y732Lfs*2|1|0.09|ENSG00000134644|chr1:30964802-30964803|-/A|frameshift_variant;ENST00000490546.1_1_1:31439047-31452930:-|nuORF	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.353759765625	2	576.354014	1150.69348	-1.7764	-0.0010238	0.97728	0.00056326	-0.79909	-0.00046056	576.3545094797714	44.663	0.79963	44.663	44.348	45.147	0					63	22	4	0	0	0	0.96599	1	4269	4269		44.377	1.981	1	5674200			67689	4815	47526	47601	73411	73411					0.1241560713679064
RNGLLLGPRG	10	Unmodified	_RNGLLLGPRG_					0	0	0		ENST00000373314.7_1_9:130267625-130268042:-|nuORF	ENST00000373314.7_1_9:130267625-130268042:-|nuORF	ENST00000373314.7_1_9:130267625-130268042:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.3050537109375	2	526.819807	1051.62506	-0.028327	-1.4923E-05	2.0308	0.0010699	2.0025	0.001055	526.8208690201828	98.633	0.56378	98.467	98.2	98.764	-0.1652					26	12	3	0	0	0	0.03519	1	12170	12170		14.865	3.3539	1	119670			67690	13073	47527	47602	73412	73412					0.10131362556944623
RNGMLFILGL	10	Unmodified	_RNGMLFILGL_					0	0	0			REV__ENSG00000186675|ENST00000373359|MAGEE2	REV__ENSG00000186675|ENST00000373359|MAGEE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3296508789062	2	567.328619	1132.64269	-0.4315	-0.0002448	2.1807	0.0012372	1.7492	0.00099239	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.1166	1	11523	11523		30.504	2.6214	1	13648000	+		67691	27878	47528	47603	73413	73413					0.08166941767581193
RNGMLFILGL	10	Unmodified	_RNGMLFILGL_					0	0	0			REV__ENSG00000186675|ENST00000373359|MAGEE2	REV__ENSG00000186675|ENST00000373359|MAGEE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3292846679688	2	567.328619	1132.64269	-0.48805	-0.00027688	2.2354	0.0012682	1.7474	0.00099135	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.1166	2	11464	11464;11573		30.504	6.2718	1	14972000	+		67692	27878	47528	47603	73414;73415	73414					0.08166941767581193
RNGMLFILGL	10	Unmodified	_RNGMLFILGL_					0	0	0			REV__ENSG00000186675|ENST00000373359|MAGEE2	REV__ENSG00000186675|ENST00000373359|MAGEE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3307495117188	2	567.328619	1132.64269	-0.39327	-0.00022312	2.2588	0.0012815	1.8655	0.0010583	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.1237	1	11163	11163		23.042	0.46283	1	19210000	+		67693	27878	47528	47603	73416	73416					0.08166941767581193
RNGMLFILGL	10	Unmodified	_RNGMLFILGL_					0	0	0			REV__ENSG00000186675|ENST00000373359|MAGEE2	REV__ENSG00000186675|ENST00000373359|MAGEE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3294067382812	2	567.328619	1132.64269	0.14889	8.447E-05	1.9222	0.0010905	2.0711	0.001175	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.1166	1	10874	10874		30.504	0.18592	1	5699400	+		67694	27878	47528	47603	73417	73417					0.08166941767581193
RNGMLFILGL	10	Unmodified	_RNGMLFILGL_					0	0	0			REV__ENSG00000186675|ENST00000373359|MAGEE2	REV__ENSG00000186675|ENST00000373359|MAGEE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3295288085938	2	567.328619	1132.64269	0.22871	0.00012975	1.4675	0.00083253	1.6962	0.00096228	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.1237	2	11148	11148;11292		29.15	3.5755	1	18337000	+		67695	27878	47528	47603	73418;73419	73418					0.08166941767581193
RNGPVKLHL	9	Unmodified	_RNGPVKLHL_					0	0	0		ENST00000579692.1_1_17:29335655-29349061:+|nuORF;ENST00000580190.5_1_17:29335655-29372465:+|nuORF	ENST00000579692.1_1_17:29335655-29349061:+|nuORF	ENST00000579692.1_1_17:29335655-29349061:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.3165893554688	2	517.3169	1032.61925	-0.18688	-9.6677E-05	-0.33261	-0.00017207	-0.51949	-0.00026874	517.3165934052006	29.262	1.314	29.113	28.826	30.14	-0.14952					68	30	4	0	0	0	0.55828	1	1744	1744		55.504	3.205	1	2295600			67696	17143	47529	47604	73420	73420					0.10424264045263953
RNGQALGL	8	Unmodified	_RNGQALGL_					0	0	0			REV__nc|ENSG00000113504|Q9Y666-2|SLC12A7	REV__nc|ENSG00000113504|Q9Y666-2|SLC12A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.89849853515625	2	414.737951	827.46135	0.1647	6.8309E-05	0.11704	4.8543E-05	0.28175	0.00011685	414.73788812850387	24.816	0.44414	24.816	24.608	25.052	0					19	9	3	0	0	0	0.027866	1	1141	1141		26.796	2.5934	1	125790	+		67697	36577	47530	47605	73421	73421					0.04071764786033327
RNGRRLILT	9	Unmodified	_RNGRRLILT_					0	0	0			REV__nc|ENSG00000125999|Q8TDL5-2|BPIFB1	REV__nc|ENSG00000125999|Q8TDL5-2|BPIFB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.8458862304688	2	549.846356	1097.67816	0.85663	0.00047102	-1.1675	-0.00064196	-0.3109	-0.00017095	549.8455662955284	19.73	0.39575	19.53	19.355	19.751	-0.2001					20	7	4	0	0	0	0.96322	1	456	456		27.882	2.3082	1	238300	+		67698	32958	47531	47606	73422	73422					0.1332274033959493
RNHFGVGR	8	Unmodified	_RNHFGVGR_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7552795410156	2	471.754467	941.494381	1.0061	0.00047463	-3.8303	-0.001807	-2.8242	-0.0013323	471.75245716048914	37.411	0.55181	37.411	37.081	37.632	0					24	14	2	0	0	0	0.027866	1	3044	3044		19.36	0	1	726690			67699	3196	47532	47607	73423	73423					0.02129391628761823
RNHRRLTG	8	Unmodified	_RNHRRLTG_					0	0	0			REV__ENST00000541412.5_1_6:10723249-10723447:+|nuORF	REV__ENST00000541412.5_1_6:10723249-10723447:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.2923278808594	2	505.291748	1008.56894	-0.43912	-0.00022188	0.07087	3.581E-05	-0.36825	-0.00018607	505.2916012295089	96.165	1.7663	96.165	95.648	97.415	0					82	40	3	0	0	0	1.0574	1	12245	12245		20.482	0.48506	1	919050	+		67700	34772	47533	47608	73424	73424					0.06500154440118422
RNIGLVVIGRN	11	Unmodified	_RNIGLVVIGRN_					0	0	0			REV__nc|ENSG00000148090|Q13825-2|AUH	REV__nc|ENSG00000148090|Q13825-2|AUH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8713989257812	2	605.872571	1209.73059	-0.92863	-0.00056263	-0.019761	-1.1972E-05	-0.94839	-0.0005746	605.8723603924029	98.583	1.08	98.583	98.233	99.313	0					66	24	4	0	0	0	0.95882	2	12597	12597;12610		45.972	12.051	1	1252900	+		67701	24593	47534	47609	73425;73426	73425					0.13411278682565353
RNIKDLKLT	9	Unmodified	_RNIKDLKLT_					0	0	0		XPR1|p.A134T|1|0.26|ENSG00000143324|chr1:180803564-180803564|G/A|missense_variant	XPR1|p.A134T|1|0.26|ENSG00000143324|chr1:180803564-180803564|G/A|missense_variant	XPR1|p.A134T|1|0.26|ENSG00000143324|chr1:180803564-180803564|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8090209960938	2	550.842948	1099.67134	-0.036885	-2.0318E-05	-0.87917	-0.00048428	-0.91605	-0.0005046	550.8427886179679	55.903	0.35787	55.687	55.562	55.92	-0.21607					11	9	2	0	0	0	0.024541	1	6016	6016		17.365	0.89182	1	254610			67702	38162	47535	47610	73427	73427					0.12549382668339604
RNILHVTF	8	Unmodified	_RNILHVTF_					0	0	0		ENSG00000034239|ENST00000262103|CLXN	ENSG00000034239|ENST00000262103|CLXN	ENSG00000034239|ENST00000262103|CLXN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3036193847656	2	500.290351	998.566149	3.1526	0.0015772	4.0565	0.0020294	7.2092	0.0036067	500.29230075476323	19.101	0.83742	19.168	18.75	19.587	0.066195					21	16	2	0	0	0	0.027866	1	332	332		26.796	0	1	66644			67703	1027	47536	47611	73428	73428					0.06680886262608965
RNIMVRDKP	9	Unmodified	_RNIMVRDKP_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9;REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.8054809570312	2	564.81895	1127.62335	-1.0933	-0.00061751	4.3147	0.002437	3.2215	0.0018195	564.8210274980621	56.317	0.40844	56.415	56.173	56.581	0.097893					19	10	3	0	0	0	0.02435	1	6197	6197		51.335	6.9583	1	273660	+		67704	26560;27091	47537	47612	73429	73429					0.06463985476671041
RNINRSCHELL	11	Unmodified	_RNINRSCHELL_					0	0	0			REV__ENSG00000096872|ENST00000380062|IFT74	REV__ENSG00000096872|ENST00000380062|IFT74	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.2373962402344	3	452.23846	1353.69355	-0.37366	-0.00016898	-2.4871	-0.0011248	-2.8607	-0.0012937	452.2373812088006	27.144	1.4921	26.988	26.464	27.956	-0.15664					95	35	5	0	0	0	0.91387	1	1445	1445		50.791	9.7112	1	1700200	+		67705	20989	47538	47613	73430	73430					0.03085239074493984
RNIPRVDQP	9	Unmodified	_RNIPRVDQP_					0	0	0		ENST00000558163.1_1_15:45661708-45670712:-|nuORF	ENST00000558163.1_1_15:45661708-45670712:-|nuORF	ENST00000558163.1_1_15:45661708-45670712:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3268432617188	2	547.806897	1093.59924	-0.64148	-0.00035141	3.5519	0.0019457	2.9104	0.0015943	547.8087206948819	42.435	1.0168	42.303	42.017	43.034	-0.13219					85	28	4	0	0	0	0.022587	1	3932	3932		96.19	0	1	3396400			67706	16744	47539	47614	73431	73431					0.056184683146511816
RNIRDAALD	9	Unmodified	_RNIRDAALD_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3018798828125	2	522.283254	1042.55196	-1.0631	-0.00055522	-3.6455	-0.001904	-4.7086	-0.0024592	522.2807167656805	60.833	0.44993	60.833	60.582	61.032	0					16	11	2	0	0	0	0.024374	1	7012	7012		40.778	17.736	1	138020	+		67707	22942	47540	47615	73432	73432					0.03238189043645434
RNISNTAGGET	11	Unmodified	_RNISNTAGGET_					0	0	0		PKHD1|p.I1120T|1|0.41|ENSG00000170927|chr6:52033035-52033035|A/G|missense_variant	PKHD1|p.I1120T|1|0.41|ENSG00000170927|chr6:52033035-52033035|A/G|missense_variant	PKHD1|p.I1120T|1|0.41|ENSG00000170927|chr6:52033035-52033035|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.3342895507812	2	560.273084	1118.53161	0.9094	0.00050951	0.42945	0.00024061	1.3388	0.00075012	560.2731829330083	51.398	0.57996	51.216	50.983	51.563	-0.18201					38	14	3	0	0	0	0.024745	1	5319	5319		41.427	23.165	1	1590100			67708	18969	47541	47616	73433	73433					-0.022910264068059405
RNIYLGLSRR	10	Unmodified	_RNIYLGLSRR_					0	0	0		ENST00000370706.8_1_6:57015592-57017052:+|nuORF	ENST00000370706.8_1_6:57015592-57017052:+|nuORF	ENST00000370706.8_1_6:57015592-57017052:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.22137451171875	3	416.582556	1246.72584	2.3071	0.0009611	1.2503	0.00052084	3.5574	0.0014819	416.9182499940438	24.399	0.17336	24.219	24.156	24.329	-0.18089					5	3	2	0	0	0	0.03519	1	1038	1038		25.126	6.5949	1	19822			67709	12970	47542	47617	73434	73434					0.1123439453976971
RNKALVLNL	9	Unmodified	_RNKALVLNL_					0	0	0			REV__ENST00000481603.1_1_11:5631742-5632569:+|nuORF	REV__ENST00000481603.1_1_11:5631742-5632569:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7913818359375	2	520.832383	1039.65021	-0.59143	-0.00030804	0.21417	0.00011154	-0.37727	-0.00019649	520.8323879275085	20.981	0.62269	20.891	20.584	21.207	-0.090092					31	12	3	0	0	0	0.024354	1	622	622		38.806	0	1	536010	+		67710	22586	47543	47618	73435	73435					0.13197417359492647
RNKGAFSA	8	Unmodified	_RNKGAFSA_					0	0	0			REV__ENSG00000091986|ENST00000206423|CCDC80	REV__ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.8624572753906	2	425.730126	849.4457	0.19125	8.1419E-05	0.52907	0.00022524	0.72032	0.00030666	425.730702379745	29.664	0.45357	29.515	29.296	29.75	-0.14952					13	10	2	0	0	0	0.027866	1	1837	1837		38.806	3.6054	1	58183	+		67711	20919	47544	47619	73436	73436					0.014954782689983404
RNKKSKMD	8	Unmodified	_RNKKSKMD_					0	0	0		ENSG00000081177|ENST00000685843|EXD2;nc|ENSG00000081177|Q9NVH0-2|EXD2	ENSG00000081177|ENST00000685843|EXD2	ENSG00000081177|ENST00000685843|EXD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.8138122558594	2	503.776751	1005.53895	0.52361	0.00026378	0.17226	8.6783E-05	0.69588	0.00035057	503.77605303137074	95.672	1.2026	95.674	94.833	96.035	0.0020752					40	27	2	0	0	0	0.027866	1	12160	12160		33.516	0	1	310450			67712	1706	47545	47620	73437	73437					0.03640034659918001
RNKPTSLWN	9	Unmodified	_RNKPTSLWN_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.3435668945312	2	558.301447	1114.58834	-0.27734	-0.00015484	4.214	0.0023527	3.9367	0.0021979	558.303653532672	73.746	0.56046	73.555	73.123	73.683	-0.19027					33	13	4	0	0	0	0.024511	1	8679	8679		32.812	0	1	155070			67713	8108	47546	47621	73438	73438					0.03563065940375054
RNLAANDL	8	Unmodified	_RNLAANDL_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2660217285156	2	443.740691	885.466829	-0.52009	-0.00023079	0.36825	0.00016341	-0.15184	-6.7379E-05	443.7406530932933	25.568	1.3198	25.534	25.238	26.558	-0.034395					60	31	3	0	0	0	0.027866	1	1319	1319		31.955	0	1	877910			67714	3633	47547	47622	73439	73439					0.019514435778546613
RNLFLLTR	8	Unmodified	_RNLFLLTR_					0	0	0		CP|p.I5Vfs*78|1|0.25|ENSG00000047457|chr3:149221774-149221780|CAAGTAT/-|frameshift_variant	CP|p.I5Vfs*78|1|0.25|ENSG00000047457|chr3:149221774-149221780|CAAGTAT/-|frameshift_variant	CP|p.I5Vfs*78|1|0.25|ENSG00000047457|chr3:149221774-149221780|CAAGTAT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.8179931640625	2	516.819276	1031.624	0.064573	3.3372E-05	-0.38844	-0.00020075	-0.32387	-0.00016738	516.8188164349012	21.634	0.7306	21.444	20.931	21.662	-0.19072					21	9	3	0	0	0	0.93274	1	679	679		47.916	0.25827	1	380170			67715	579	47548	47623	73440	73440					0.10945148188011444
RNLFREFL	8	Unmodified	_RNLFREFL_					0	0	0		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3271484375	2	547.808908	1093.60326	-0.69753	-0.00038211	1.6297	0.00089275	0.93214	0.00051064	547.8101044047954	41.63	0.96328	41.498	40.753	41.716	-0.13219					26	11	3	0	0	0	0.027866	1	3673	3673		94.006	22.711	1	779650			67716	1970	47549	47624	73441	73441					0.06020557808369631
RNLGSTALSP	10	Unmodified	_RNLGSTALSP_					0	0	0		nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4	nc|ENSG00000283228|O00305-2|CACNB4	nc|ENSG00000283228|O00305-2|CACNB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.806640625	2	508.28018	1014.54581	0.56272	0.00028602	4.4184	0.0022458	4.9811	0.0025318	508.7841936224483	20.655	0.34555	20.459	20.286	20.632	-0.19577					10	6	2	0	0	0	0.03519	1	576	576		38.754	0	1	26081			67717	9134	47550	47625	73442	73442					0.03911670812135526
RNLILAFILGL	11	Unmodified	_RNLILAFILGL_					0	0	0			REV__ENSG00000155957|ENST00000358230|TMBIM4	REV__ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.9004516601562	2	621.900266	1241.78598	0.5184	0.00032239	0.52355	0.0003256	1.042	0.00064799	621.9003389778508	105.39	0.39869	105.23	105.09	105.48	-0.16484					24	10	3	0	0	0	1.0813	1	13103	13103		16.473	0.83134	1	1135300	+		67718	25038	47551	47626	73443	73443					0.1747569215033309
RNLILPYIS	9	Unmodified	_RNLILPYIS_					0	0	0		ENSG00000038210|ENST00000264864|PI4K2B	ENSG00000038210|ENST00000264864|PI4K2B	ENSG00000038210|ENST00000264864|PI4K2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8037719726562	2	544.826766	1087.63898	-1.3378	-0.00072885	-3.1731	-0.0017288	-4.5108	-0.0024576	544.825138385573	21.787	0.48202	21.574	21.363	21.845	-0.2128					20	9	3	0	0	0	0.024541	1	696	696		15.642	0	1	27564			67719	1050	47552	47627	73444	73444					0.09866595265361866
RNLIRDNR	8	Unmodified	_RNLIRDNR_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.801025390625	2	528.804688	1055.59482	-0.51833	-0.00027409	4.0246	0.0021282	3.5063	0.0018541	529.3095398050709	40.546	0.31662	40.546	40.448	40.764	0					12	8	2	0	0	0	0.027866	1	3597	3597		40.573	4.9543	1	226040			67720	6151	47553	47628	73445	73445					0.0692500389172892
RNLKGVVSA	9	Unmodified	_RNLKGVVSA_					0	0	0		ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	ENSG00000149571|ENST00000525144|KIRREL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2880554199219	2	472.287808	942.561064	0.20114	9.4994E-05	-0.67758	-0.00032001	-0.47644	-0.00022502	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	0.98697	1	12040	12040		23.042	4.7181	1	52660000			67721	6102	47554	47629	73446	73446					0.0874858239999412
RNLPFDFTW	9	Unmodified	_RNLPFDFTW_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	598.2984619140625	2	598.298373	1194.58219	0.10214	6.1108E-05	-0.10484	-6.2727E-05	-0.0027046	-1.6182E-06	598.2982061971097	82.452	1.2128	82.231	81.871	83.083	-0.22015					76	27	5	0	0	0	0.015901	3	9926	9914;9926;9938		157.33	89.835	1	2775700			67722	2081	47555	47630	73447;73448;73449	73448					-0.0073145229116562405
RNLPFDFTW	9	Unmodified	_RNLPFDFTW_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	598.2985229492188	2	598.298373	1194.58219	-0.40826	-0.00024426	0.17336	0.00010372	-0.2349	-0.00014054	598.2983626577703	82.404	1.0376	82.224	81.898	82.936	-0.18079					63	23	4	0	0	0	0.013333	2	9928	9928;9940		176.41	96.698	1	2989700			67723	2081	47555	47630	73450;73451	73450					-0.0073145229116562405
RNLPFDFTW	9	Unmodified	_RNLPFDFTW_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.2984008789062	2	598.298373	1194.58219	-0.94966	-0.00056818	0.9787	0.00058556	0.02904	1.7375E-05	598.2988010367025	82.362	1.0809	82.222	81.87	82.951	-0.14014					71	24	5	0	0	0	0.016811	2	9908	9908;9919		201.49	105.3	1	2847200			67724	2081	47555	47630	73452;73453	73452					-0.0073145229116562405
RNLPMDTFT	9	Unmodified	_RNLPMDTFT_					0	0	0		ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.326904296875	2	547.768591	1093.52263	-1.2278	-0.00067253	3.7194	0.0020374	2.4916	0.0013648	547.7704918979078	43.458	0.5082	43.458	43.113	43.621	0					20	13	2	0	0	0	0.022756	1	4019	4019		90.777	5.8611	1	194030			67725	6316	47556	47631	73454	73454					-0.020390912968423436
RNLPPYVAY	9	Unmodified	_RNLPPYVAY_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;ENST00000608291.1_1_19:32968395-32973143:+|nuORF	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.267578125	2	546.795466	1091.57638	-1.1341	-0.00062012	-3.5113	-0.00192	-4.6454	-0.0025401	546.7935746828165	40.046	0.45747	39.934	39.715	40.172	-0.11223					21	11	2	0	0	0	0.024466	1	3484	3484		33.516	9.3128	1	347010			67726	8842	47557	47632	73455	73455					0.03425449197175112
RNLPVGGL	8	Unmodified	_RNLPVGGL_					0	0	0		ENSG00000257057|ENST00000542198|C11orf97	ENSG00000257057|ENST00000542198|C11orf97	ENSG00000257057|ENST00000542198|C11orf97	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.7131042480469	2	413.250695	824.486836	-0.3894	-0.00016092	0.68543	0.00028325	0.29603	0.00012233	413.2508988180658	73.554	0.66989	73.289	72.977	73.647	-0.26479					29	16	3	0	0	0	0.027866	1	8624	8624		20.482	13.288	1	379900			67727	10914	47558	47633	73456	73456					0.06757239308467433
RNLSTPPLR	9	Unmodified	_RNLSTPPLR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3125610351562	2	527.311815	1052.60908	1.9399	0.0010229	-2.2413	-0.0011818	-0.3014	-0.00015893	527.3104331020087	19.976	0.38548	20.042	19.829	20.215	0.066195					19	7	3	0	0	0	0.80003	1	439	439		39.253	0	1	146200			67728	4927	47559	47634	73457	73457					0.08487656320016868
RNLSTPPLR	9	Unmodified	_RNLSTPPLR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	527.311815	1052.60908	-0.69845	-0.0003683	0.35939	0.00018951	-0.33907	-0.00017879	527.3117941669517	19.845	0.42817	19.845	19.6	20.028	0	-0.11141	0.00085408	NaN	39.253	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163020			67729	4927	47559	47634							0.08487656320016868
RNLSTPPLR	9	Unmodified	_RNLSTPPLR_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	527.311815	1052.60908	-0.59751	-0.00031508	0.14572	7.6841E-05	-0.45179	-0.00023823	527.3117655206097	20.088	0.53134	19.983	19.745	20.277	-0.10477	0.02633	0.00062875	NaN	39.253	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141020			67730	4927	47559	47634							0.08487656320016868
RNLVYDQSP	9	Unmodified	_RNLVYDQSP_					0	0	0		ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1	ENSG00000072864|ENST00000396354|NDE1	ENSG00000072864|ENST00000396354|NDE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2609252929688	2	546.277638	1090.54072	-0.64827	-0.00035413	1.7619	0.00096249	1.1136	0.00060836	546.2791030706527	52.642	0.35645	52.515	52.195	52.552	-0.12706					14	8	2	0	0	0	0.024292	1	5456	5456		40.778	0	1	144660			67731	1494	47560	47635	73458	73458					-0.0009263305048534676
RNLYPIPGP	9	Unmodified	_RNLYPIPGP_					0	0	0		ENST00000550513.1_1_12:53689351-53689741:+|nuORF	ENST00000550513.1_1_12:53689351-53689741:+|nuORF	ENST00000550513.1_1_12:53689351-53689741:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.3023681640625	2	513.790184	1025.56581	0.41256	0.00021197	2.3355	0.0012	2.7481	0.001412	513.7915895267939	51.871	0.89342	51.687	51.179	52.073	-0.18404					30	23	2	0	0	0	0.024517	1	5299	5299		19.36	0	1	134970			67732	16583	47561	47636	73459	73459					0.0540546654276568
RNMQVPQESL	10	Unmodified	_RNMQVPQESL_					0	0	0		ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.204833984375	3	401.204645	1200.59211	0.94539	0.0003793	-0.48173	-0.00019327	0.46366	0.00018602	401.2043540109921	17.297	0.4011	17.09	16.963	17.364	-0.20669					12	7	2	0	0	0	1.1246	1	162	162		23.523	0.94304	1	64320			67733	2392	47562	47637	73460	73460					-0.00016632348069833824
RNNGRYCT	8	Unmodified	_RNNGRYCT_					0	0	0		ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2725830078125	2	492.227425	982.440297	-0.41622	-0.00020487	-1.8466	-0.00090893	-2.2628	-0.0011138	492.2269257184658	23.548	0.34411	23.624	23.434	23.778	0.076241					10	7	2	0	0	0	0.027866	1	904	904		38.806	7.2763	1	32030			67734	6432	47563	47638	73461	73461					-0.05162568585137706
RNNKEAMALY	10	Unmodified	_RNNKEAMALY_					0	0	0		ENSG00000188613|ENST00000425699|NANOS1	ENSG00000188613|ENST00000425699|NANOS1	ENSG00000188613|ENST00000425699|NANOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.3051147460938	2	605.305872	1208.59719	-1.2271	-0.00074274	-2.6351	-0.0015951	-3.8622	-0.0023378	605.3043100102433	61.379	0.74305	61.203	60.874	61.617	-0.1761					39	17	3	0	0	0	0.55353	1	6883	6883		82.241	20.133	1	1762300			67735	9732	47564	47639	73462	73462					0.0012367151452963299
RNNKEAMALY	10	Unmodified	_RNNKEAMALY_					0	0	0		ENSG00000188613|ENST00000425699|NANOS1	ENSG00000188613|ENST00000425699|NANOS1	ENSG00000188613|ENST00000425699|NANOS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.3046875	2	605.305872	1208.59719	-0.54551	-0.0003302	-3.1845	-0.0019276	-3.7301	-0.0022578	605.30384756029	61.6	0.65867	61.343	61.008	61.667	-0.25725					41	15	4	0	0	0	0.96965	1	6889	6889		49.442	1.482	1	1889600			67736	9732	47564	47639	73463	73463					0.0012367151452963299
RNNNYPKINP	10	Unmodified	_RNNNYPKINP_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.535400390625	3	410.551033	1228.63127	-0.02334	-9.5823E-06	-3.1364	-0.0012877	-3.1597	-0.0012972	410.54965089436877	47.828	0.73338	47.552	47.157	47.89	-0.27598					56	19	4	0	0	0	0.03519	1	4639	4639		38.754	0	1	2050300	+		67737	23932	47565	47640	73464	73464					0.026098359978050212
RNNQGSEHV	9	Unmodified	_RNNQGSEHV_					0	0	0			REV__nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2861328125	2	520.747036	1039.47952	-0.72704	-0.00037861	-2.9618	-0.0015424	-3.6889	-0.001921	520.7456465769394	26.992	0.59288	26.992	26.658	27.251	0					20	14	2	0	0	0	0.024397	1	1381	1381		39.253	15.05	1	54885	+		67738	25203	47566	47641	73465	73465					-0.03864145029911015
RNNYAPPR	8	Unmodified	_RNNYAPPR_					0	0	0		ENSG00000141744|ENST00000269582|PNMT	ENSG00000141744|ENST00000269582|PNMT	ENSG00000141744|ENST00000269582|PNMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.29351806640625	2	494.259582	986.504612	-0.16058	-7.937E-05	2.9041	0.0014354	2.7435	0.001356	494.2609069377259	19.505	0.96406	19.386	19.2	20.164	-0.11872					27	19	2	0	0	0	0.027866	1	447	447		60.294	7.3573	1	50472			67739	5520	47567	47642	73466	73466					0.010819545633125927
RNPITPVK	8	Unmodified	_RNPITPVK_					0	0	0		ENST00000551558.1_1_12:77439797-77459307:-|nuORF;nc|ENSG00000165891|Q96AV8-2|E2F7;nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7713317871094	2	462.784902	923.55525	0.79652	0.00036862	-0.87506	-0.00040496	-0.078541	-3.6348E-05	462.78432283589353	24.916	0.60309	24.994	24.731	25.334	0.078344					20	13	2	0	0	0	0.027866	1	1088	1088		42.396	0	1	90590			67740	7480	47568	47643	73467	73467					0.0904148388832482
RNPKLEKAE	9	Unmodified	_RNPKLEKAE_					0	0	0		nc|ENSG00000179111|Q9BYE0|HES7;ENSG00000179111|ENST00000541682|HES7	nc|ENSG00000179111|Q9BYE0|HES7	nc|ENSG00000179111|Q9BYE0|HES7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.3240356445312	2	542.809105	1083.60366	-0.91161	-0.00049483	4.1674	0.0022621	3.2557	0.0017673	542.8113401243338	45.288	0.9499	45.332	45.074	46.024	0.043877					69	27	4	0	0	0	0.024288	1	4369	4369		44.377	6.5657	1	3199400			67741	8871	47569	47644	73468	73468					0.06519932737569434
RNPLQKDPQ	9	Unmodified	_RNPLQKDPQ_					0	0	0		nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.326904296875	2	548.298904	1094.58326	-1.0377	-0.00056895	-1.568	-0.00085976	-2.6057	-0.0014287	548.2981978269844	43.283	0.40212	43.283	43.038	43.44	0					13	10	2	0	0	0	0.022756	1	4019	4019		79.451	15.244	1	82049			67742	3481	47570	47645	73469	73469					0.039747620777461634
RNPLQKDPQ	9	Unmodified	_RNPLQKDPQ_					0	0	0		nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.298904	1094.58326	-0.29062	-0.00015935	-1.7581	-0.00096397	-2.0487	-0.0011233	548.2978561105693	43.346	0.25865	43.377	43.191	43.45	0.030827	0.047048	-0.00011664	NaN	79.451	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64678			67743	3481	47570	47645							0.039747620777461634
RNPLSVTL	8	Unmodified	_RNPLSVTL_					0	0	0		ENST00000547315.5_2_14:105461343-105461589:+|nuORF	ENST00000547315.5_2_14:105461343-105461589:+|nuORF	ENST00000547315.5_2_14:105461343-105461589:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2688903808594	2	450.269084	898.523616	-0.73235	-0.00032976	0.55365	0.00024929	-0.1787	-8.0462E-05	450.26915918046706	43.908	1.0411	43.763	43.353	44.394	-0.14471					71	29	4	0	0	0	0.71833	1	4148	4148		65.803	0	1	6393400			67744	16528	47571	47646	73470	73470					0.07029491134380805
RNPNEETLD	9	Unmodified	_RNPNEETLD_					0	0	0			REV__PRPF3|p.K407N|1|0.35|ENSG00000117360|chr1:150340416-150340416|G/C|missense_variant	REV__PRPF3|p.K407N|1|0.35|ENSG00000117360|chr1:150340416-150340416|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3025512695312	2	544.25436	1086.49417	0.72136	0.0003926	3.8921	0.0021183	4.6134	0.0025109	544.256191093791	74.589	0.16887	74.589	74.466	74.635	0					5	3	2	0	0	0	0.024344	1	9126	9126		45.972	22.93	1	48220	+		67745	37409	47572	47647	73471	73471					-0.04562117672435306
RNPNKELKP	9	Unmodified	_RNPNKELKP_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.326904296875	2	548.317097	1094.61964	-0.99744	-0.00054691	2.0668	0.0011333	1.0694	0.00058636	548.3181594582138	43.246	0.76252	43.246	42.823	43.585	0					53	20	4	0	0	0	0.023239	1	4019	4019		74.255	0	1	2608500			67746	8108	47573	47648	73472	73472					0.07611638974481139
RNPPLLLI	8	Unmodified	_RNPPLLLI_					0	0	0		CSTL1|p.L10P|1|0.26|ENSG00000125823|chr20:23440296-23440296|T/C|missense_variant	CSTL1|p.L10P|1|0.26|ENSG00000125823|chr20:23440296-23440296|T/C|missense_variant	CSTL1|p.L10P|1|0.26|ENSG00000125823|chr20:23440296-23440296|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.30450439453125	2	468.30547	934.596387	-0.27594	-0.00012923	-0.68264	-0.00031968	-0.95859	-0.00044891	468.3051649520783	62.223	1.9745	61.996	61.495	63.469	-0.22663					102	54	5	0	0	0	1.0574	1	7228	7228		26.796	0	1	45322000			67747	597	47574	47649	73473	73473					0.12647244927802603
RNPPPAQPP	9	Unmodified	_RNPPPAQPP_					0	0	0			REV__ENSG00000169604|ENST00000303714|ANTXR1	REV__ENSG00000169604|ENST00000303714|ANTXR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2621154785156	2	487.264333	972.514114	0.55817	0.00027198	-1.5963	-0.00077784	-1.0382	-0.00050587	487.26345682584594	77.054	0.45852	76.802	76.484	76.943	-0.25162					18	10	2	0	0	0	0.024436	1	9181	9181		38.806	15.764	1	366480	+		67748	26382	47575	47650	73474	73474					0.026757228488463625
RNPPPAQPP	9	Unmodified	_RNPPPAQPP_					0	0	0			REV__ENSG00000169604|ENST00000303714|ANTXR1	REV__ENSG00000169604|ENST00000303714|ANTXR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.264333	972.514114	-0.16856	-8.2134E-05	-1.2362	-0.00060235	-1.4048	-0.00068449	487.263757996993	76.705	0.36874	76.719	76.532	76.9	0.013504	-0.043202	0.0002088	NaN	30.504	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99686	+		67749	26382	47575	47650							0.026757228488463625
RNPQNYTN	8	Unmodified	_RNPQNYTN_					0	0	0		L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|100|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|100|3|sense	L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|100|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2594299316406	2	503.73868	1005.46281	0.62846	0.00031658	1.5537	0.00078264	2.1821	0.0010992	504.2389510517885	22.878	0.23167	22.687	22.479	22.711	-0.19117					5	4	2	0	0	0	0.027866	1	813	813		31.955	0	1	10265			67750	17893	47576	47651	73475	73475					-0.03970645915865134
RNPVRINV	8	Unmodified	_RNPVRINV_					0	0	0			REV__ENSG00000169288|ENST00000315567|MRPL1	REV__ENSG00000169288|ENST00000315567|MRPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2779541015625	2	484.293425	966.572297	-1.2807	-0.00062026	0.93219	0.00045145	-0.34856	-0.0001688	484.29381623396193	27.184	0.61563	27.266	27.031	27.646	0.081291					40	16	3	0	0	0	0.027866	1	1412	1412		25.45	0	1	697910	+		67751	26347	47577	47652	73476	73476					0.08767404494130915
RNQCLQRNC	9	Unmodified	_RNQCLQRNC_					0	0	0			REV__ENSG00000136169|ENST00000611815|SETDB2	REV__ENSG00000136169|ENST00000611815|SETDB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.763916015625	2	567.766391	1133.51823	-1.6591	-0.00094199	-2.735	-0.0015529	-4.3941	-0.0024948	567.7646856215697	20.679	0.72632	20.679	20.42	21.146	0					35	14	3	0	0	0	0.83071	1	579	579		37.159	4.3467	1	352450	+		67752	23635	47578	47653	73477	73477					-0.04318878991375641
RNQEINLL	8	Unmodified	_RNQEINLL_					0	0	0		ENST00000565499.1_1_16:21658349-21663919:-|nuORF	ENST00000565499.1_1_16:21658349-21663919:-|nuORF	ENST00000565499.1_1_16:21658349-21663919:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2828674316406	2	500.282723	998.550893	-0.79341	-0.00039693	-0.24091	-0.00012052	-1.0343	-0.00051745	500.28250524748483	37.833	0.73566	37.865	37.6	38.336	0.032272					66	20	5	0	0	0	0.845	1	3062	3062		55.504	11.387	1	2845600			67753	16923	47579	47654	73478	73478					0.051559746747557256
RNQETGEP	8	Unmodified	_RNQETGEP_					0	0	0			REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.21136474609375	2	465.717413	929.420273	0.14589	6.7945E-05	-1.8635	-0.00086786	-1.7176	-0.00079992	465.716825135097	103.02	0.2738	102.85	102.72	103	-0.17034					9	6	2	0	0	0	0.027866	1	12800	12800		38.806	9.6566	1	190680	+		67754	22688	47580	47655	73479	73479					-0.04726041044091289
RNQLKRCTKGT	11	Unmodified	_RNQLKRCTKGT_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0|CCDC158	REV__nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.9110412597656	3	435.578705	1303.71429	1.4143	0.00061602	-3.624	-0.0015785	-2.2097	-0.00096251	435.57704527423255	110.37	0.77484	110.37	110.08	110.86	0					74	23	4	0	0	0	1.0648	1	14061	14061		21.032	2.5012	1	451640	+		67755	25629	47581	47656	73480	73480					0.07457829454119747
RNQLKRCTKGT	11	Unmodified	_RNQLKRCTKGT_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0|CCDC158	REV__nc|ENSG00000163749|Q5M9N0|CCDC158	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.57769775390625	3	435.578705	1303.71429	0.29994	0.00013065	-2.3834	-0.0010381	-2.0834	-0.00090749	435.57752878572217	110.31	0.40344	110.3	110.16	110.56	-0.009491					48	14	4	0	0	0	1.0371	1	13930	13930		28.577	0.93281	1	488450	+		67756	25629	47581	47656	73481	73481					0.07457829454119747
RNQLSLSL	8	Unmodified	_RNQLSLSL_					0	0	0		MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant	MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant	MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2615051269531	2	465.771991	929.529429	-0.202	-9.4085E-05	0.10547	4.9126E-05	-0.096526	-4.4959E-05	465.77191384596	22.895	0.85132	22.834	22.378	23.229	-0.06086					29	18	3	0	0	0	0.027866	1	795	795		31.955	20.444	1	158410			67757	17990	47582	47657	73482	73482					0.06184589646045424
RNQNLILI	8	Unmodified	_RNQNLILI_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7848205566406	2	492.303458	982.592364	0.33015	0.00016253	3.5484	0.0017469	3.8785	0.0019094	492.30503152252624	78.556	0.6022	78.325	78.091	78.694	-0.23141					21	13	2	0	0	0	0.027866	1	9349	9349		42.474	1.9018	1	239100	+		67758	27943	47583	47658	73483	73483					0.10037155434099532
RNQNNKTN	8	Unmodified	_RNQNNKTN_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.R2153Lfs*30|1|0.17|ENSG00000123104|chr12:26439279-26439312|GGAAAAACTATTTGTTCCATGGTCCTATCATGCC/-|frameshift_variant	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7540588378906	2	494.749579	987.484605	5.1034	0.0025249	2.7296	0.0013505	7.833	0.0038754	494.750480057984	17.689	0.41515	17.75	17.537	17.952	0.06036					15	10	2	0	0	0	1.0574	1	168	168		18.324	1.8513	1	23374			67759	3956	47584	47659	73484	73484					-0.009638411672995062
RNRIKYAD	8	Unmodified	_RNRIKYAD_					0	0	0			REV__ENST00000282382.8_2_5:114915695-114915866:-|nuORF	REV__ENST00000282382.8_2_5:114915695-114915866:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3167114257812	2	518.28834	1034.56213	-1.0972	-0.00056865	-1.3175	-0.00068286	-2.4147	-0.0012515	518.2877615145833	29.409	0.21813	29.163	29.055	29.273	-0.24524					8	4	2	0	0	0	0.027866	1	1811	1811		50.025	10.772	1	58961	+		67760	29897	47585	47660	73485	73485					0.04622796768899207
RNRLIKAY	8	Unmodified	_RNRLIKAY_					0	0	0		MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant;ENSG00000159256|ENST00000400485|MORC3	MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant;ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.3167724609375	2	517.3169	1032.61925	-1.0649	-0.00055089	0.8048	0.00041634	-0.2601	-0.00013455	517.3171595481413	29.409	0.81569	29.164	28.838	29.654	-0.24524					50	18	4	0	0	0	0.91239	1	1798	1798		50.025	2.1089	1	1660500			67761	17990;6732	47586	47661	73486	73486					0.10424264045286691
RNRLKYAL	8	Unmodified	_RNRLKYAL_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000419038.2_1_2:63870904-63871126:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.3168334960938	2	517.3169	1032.61925	-1.0649	-0.00055089	0.8048	0.00041634	-0.2601	-0.00013455	517.3171595481413	29.409	0.81569	29.164	28.838	29.654	-0.24524					50	18	4	0	0	0	0.91239	1	1789	1789		50.025	11.218	1	1660500			67762	10086	47587	47662	73487	73487					0.10424264045263953
RNRLKYAL	8	Unmodified	_RNRLKYAL_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000419038.2_1_2:63870904-63871126:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.316650390625	2	517.3169	1032.61925	-0.41609	-0.00021525	0.017276	8.9373E-06	-0.39881	-0.00020631	517.3167950938025	29.311	0.85257	29.139	28.808	29.66	-0.17258					57	19	4	0	0	0	0.65272	2	1780	1768;1780		71.378	12.378	1	1941900			67763	10086	47587	47662	73488;73489	73489					0.10424264045263953
RNRLLLPA	8	Unmodified	_RNRLLLPA_					0	0	0			REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.8074951171875	2	476.806168	951.597784	0.019887	9.4824E-06	3.1516	0.0015027	3.1715	0.0015122	476.80741843361733	102.5	0.56641	102.37	102.15	102.72	-0.12666					27	12	3	0	0	0	1.0572	1	12750	12750		28.254	1.4582	1	473690	+		67764	26271	47588	47663	73490	73490					0.12004879016569703
RNRLRALP	8	Unmodified	_RNRLRALP_					0	0	0		ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	MSMS	OPSCC_39_ClassI_Rep-3	3	498.3127136230469	2	498.314692	994.614831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.448	1	18.512	18.012	19.012	0.063307								0	0	0	1.0904	1	253	253		14.664	0.88877	1				67765	8834	47589	47664	73491	73491					0.11730799622375798
RNRLTAFYL	9	Unmodified	_RNRLTAFYL_					0	0	0			REV__ENSG00000079335|ENST00000336454|CDC14A	REV__ENSG00000079335|ENST00000336454|CDC14A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3275146484375	2	577.327465	1152.64038	-0.1193	-6.8875E-05	-0.83502	-0.00048208	-0.95432	-0.00055096	577.3265644260136	37.661	0.71024	37.468	37.152	37.862	-0.193					53	18	4	0	0	0	0.77768	1	3037	3037		40.778	1.5253	1	2307500	+		67766	20634	47590	47665	73492	73492					0.07016229354144343
RNRMILEL	8	Unmodified	_RNRMILEL_					0	0	0		ENST00000415149.6_1_3:107524383-107524587:+|nuORF	ENST00000415149.6_1_3:107524383-107524587:+|nuORF	ENST00000415149.6_1_3:107524383-107524587:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.802490234375	2	522.802768	1043.59098	1.0938	0.00057183	-1.8126	-0.00094765	-0.71886	-0.00037582	522.8017479620929	97.019	1.637	96.896	96.351	97.988	-0.12369					121	37	5	0	0	0	0.46709	1	12016	12016		88.643	3.2834	1	2366800			67767	13872	47591	47666	73493	73493					0.07093198073675921
RNRPELLS	8	Unmodified	_RNRPELLS_					0	0	0			REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7828674316406	2	492.78289	983.551228	-0.22995	-0.00011332	0.024345	1.1997E-05	-0.20561	-0.00010132	492.7829278563097	20.049	0.68623	20.049	19.782	20.468	0					30	13	3	0	0	0	0.78609	1	486	486		60.294	0	1	590390	+		67768	28976	47592	47667	73494	73494					0.05879394394617066
RNRRGHFT	8	Unmodified	_RNRRGHFT_					0	0	0			REV__ENST00000368662.9_1_6:112397672-112400876:-|nuORF	REV__ENST00000368662.9_1_6:112397672-112400876:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7670288085938	2	522.283923	1042.55329	-0.49581	-0.00025895	-0.68516	-0.00035785	-1.181	-0.0006168	522.2834611316341	22.649	0.6524	22.573	22.177	22.829	-0.075296					28	13	3	0	0	0	0.027866	1	803	803		42.474	0	1	115080	+		67769	31061	47593	47668	73495	73495					0.0337186792310149
RNRRWWMW	8	Unmodified	_RNRRWWMW_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	645.8252563476562	2	645.824901	1289.63525	0.47077	0.00030403	-0.3315	-0.00021409	0.13926	8.9939E-05	645.824620782597	22.112	1.082	22.112	21.537	22.619	0					67	22	5	0	0	0	0.88442	1	740	740		52.299	2.7631	1	530790	+		67770	25181	47594	47669	73496	73496					0.0020164701052181044
RNRTAMDQ	8	Unmodified	_RNRTAMDQ_					0	0	0		nc|ENSG00000133433|P0CG29|GSTT2;ENSG00000133433|ENST00000290765|GSTT2B	nc|ENSG00000133433|P0CG29|GSTT2	nc|ENSG00000133433|P0CG29|GSTT2	MSMS	OPSCC_40_ClassI_Rep-1	4	496.23876953125	2	496.240532	990.466512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.425	1	31.184	30.684	31.684	-0.24109								0	0	0	0.83467	1	2088	2088		31.955	0	1				67771	4708	47595	47670	73497	73497					-0.02910299413656503
RNSETLVKV	9	Unmodified	_RNSETLVKV_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.303655	1044.59276	0.82974	0.00043421	-1.2581	-0.00065835	-0.42833	-0.00022415	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	0.77768	1	10325	10325		40.778	0	1	3893600	+		67772	25863	47596	47671	73498	73498					0.07224530363282611
RNSGLIGQL	9	Unmodified	_RNSGLIGQL_					0	0	0		ENSG00000214960|ENST00000407010|CRPPA;nc|ENSG00000214960|A4D126-2|CRPPA	ENSG00000214960|ENST00000407010|CRPPA	ENSG00000214960|ENST00000407010|CRPPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2779235839844	2	479.277441	956.540328	0.21198	0.0001016	0.12251	5.8716E-05	0.33449	0.00016032	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.77768	1	10496	10496		40.778	1.972	1	4888300			67773	10575	47597	47672	73499	73499					0.06031992020314192
RNSGMMLAF	9	Unmodified	_RNSGMMLAF_					0	0	0			REV__nc|ENSG00000048028|Q96RU2-2|USP28	REV__nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7476806640625	2	513.746605	1025.47866	2.8691	0.001474	-0.45184	-0.00023213	2.4172	0.0012418	513.7462210818547	18.853	2.3512	18.916	18.452	20.803	0.063307					95	47	3	0	0	0	0.67308	1	260	260		47.916	0.25827	1	180820	+		67774	20135	47598	47673	73500	73500					-0.03306398994823212
RNSHQVFQD	9	Unmodified	_RNSHQVFQD_					0	0	0		ENST00000531038.5_1_4:8472779-8495174:+|nuORF	ENST00000531038.5_1_4:8472779-8495174:+|nuORF	ENST00000531038.5_1_4:8472779-8495174:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.8055419921875	2	565.770511	1129.52647	-0.74004	-0.00041869	-1.375	-0.00077794	-2.1151	-0.0011966	565.7691613340291	56.652	0.21782	56.652	56.46	56.678	0					7	5	2	0	0	0	0.024427	1	6302	6302		34.173	3.6037	1	83250			67775	16251	47599	47674	73501	73501					-0.03311285478753234
RNSKKRTH	8	Unmodified	_RNSKKRTH_					0	0	0			REV__ENST00000598928.1_1_19:58452294-58458975:-|nuORF	REV__ENST00000598928.1_1_19:58452294-58458975:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7991333007812	2	513.799406	1025.58426	0.60778	0.00031228	-0.55457	-0.00028494	0.053217	2.7343E-05	513.798850931214	19.348	0.61557	19.348	19.119	19.735	0					46	12	6	0	0	0	0.81662	1	401	401		57.811	7.7867	1	808530	+		67776	24840	47600	47675	73502	73502					0.0724902123731681
RNSSKKKL	8	Unmodified	_RNSSKKKL_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.80108642578125	2	480.801083	959.587613	-0.093749	-4.5075E-05	-0.87373	-0.00042009	-0.96748	-0.00046516	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	1.0574	1	11986	11986		26.796	2.5934	1	24672000			67777	2166	47601	47676	73503	73503					0.10620271291338668
RNSSKKKL	8	Unmodified	_RNSSKKKL_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.8009033203125	2	480.801083	959.587613	-0.63881	-0.00030714	-0.31138	-0.00014971	-0.95019	-0.00045685	480.80082202255966	94.22	2.2256	94.226	93.689	95.914	0.0059814					161	52	5	0	0	0	1.0338	1	11972	11972		31.955	0	1	22094000			67778	2166	47601	47676	73504	73504					0.10620271291338668
RNSSKKKL	8	Unmodified	_RNSSKKKL_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.8009033203125	2	480.801083	959.587613	-0.2816	-0.00013539	-0.68594	-0.0003298	-0.96754	-0.00046519	480.8006558847944	94.33	2.1067	94.192	93.703	95.809	-0.13779					175	48	6	0	0	0	1.0338	1	11641	11641		31.955	0	1	20329000			67779	2166	47601	47676	73505	73505					0.10620271291338668
RNSSLWEYD	9	Unmodified	_RNSSLWEYD_					0	0	0		ENST00000535516.5_1_13:111293886-111298616:-|nuORF;ENST00000540215.1_1_13:111296932-111298616:-|nuORF;ENST00000537802.5_1_13:111296499-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.2434692382812	2	585.264727	1168.5149	0.45674	0.00026731	-2.3709	-0.0013876	-1.9142	-0.0011203	585.2635585995453	98.496	0.35472	98.36	98.147	98.501	-0.13625					19	7	3	0	0	0	0.024495	1	12171	12171		42.396	8.2236	1	95407			67780	16350	47602	47677	73506	73506					-0.06261527292781466
RNSSLWEYD	9	Unmodified	_RNSSLWEYD_					0	0	0		ENST00000535516.5_1_13:111293886-111298616:-|nuORF;ENST00000540215.1_1_13:111296932-111298616:-|nuORF;ENST00000537802.5_1_13:111296499-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	585.264727	1168.5149	-1.1255	-0.0006587	0.30444	0.00017818	-0.82104	-0.00048053	585.2645612485034	98.475	0.50034	98.475	98.19	98.691	0	0.0883	0.00098033	NaN	42.396	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70191			67781	16350	47602	47677							-0.06261527292781466
RNSSLWEYD	9	Unmodified	_RNSSLWEYD_					0	0	0		ENST00000535516.5_1_13:111293886-111298616:-|nuORF;ENST00000540215.1_1_13:111296932-111298616:-|nuORF;ENST00000537802.5_1_13:111296499-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	585.264727	1168.5149	-0.82678	-0.00048388	0.29097	0.0001703	-0.53581	-0.00031359	585.2646056831476	98.409	0.50239	98.419	98.19	98.693	0.010231	0.032472	0.00096457	NaN	42.396	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99020			67782	16350	47602	47677							-0.06261527292781466
RNSSLWEYD	9	Unmodified	_RNSSLWEYD_					0	0	0		ENST00000535516.5_1_13:111293886-111298616:-|nuORF;ENST00000540215.1_1_13:111296932-111298616:-|nuORF;ENST00000537802.5_1_13:111296499-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.264727	1168.5149	0.41847	0.00024491	-2.2881	-0.0013391	-1.8696	-0.0010942	585.2638980803943	98.415	0.5243	98.291	98.111	98.635	-0.12413	-0.095897	-0.0020543	NaN	42.396	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100890			67783	16350	47602	47677							-0.06261527292781466
RNSSLWEYD	9	Unmodified	_RNSSLWEYD_					0	0	0		ENST00000535516.5_1_13:111293886-111298616:-|nuORF;ENST00000540215.1_1_13:111296932-111298616:-|nuORF;ENST00000537802.5_1_13:111296499-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.264727	1168.5149	-0.63435	-0.00037127	-1.0851	-0.00063505	-1.7194	-0.0010063	585.2644914051089	98.553	0.55867	98.388	98.116	98.675	-0.1652	0.001667	-0.00064611	NaN	42.396	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96013			67784	16350	47602	47677							-0.06261527292781466
RNTKFIAP	8	Unmodified	_RNTKFIAP_					0	0	0		nc|ENSG00000178217|Q5SQS7-3|SH2D4B;nc|ENSG00000178217|Q5SQS7-2|SH2D4B;nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	nc|ENSG00000178217|Q5SQS7-3|SH2D4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7918701171875	2	473.777077	945.5396	0.41386	0.00019608	3.5675	0.0016902	3.9813	0.0018863	473.7785686109056	18.639	0.98927	18.436	18.163	19.152	-0.20371					28	19	3	0	0	0	0.027866	1	303	303		94.006	17.16	1	48593			67785	18549	47603	47678	73507	73507					0.06465197371255726
RNTLSSKLL	9	Unmodified	_RNTLSSKLL_					0	0	0			REV__ENST00000417956.6_1_10:11367879-11367930:+|nuORF	REV__ENST00000417956.6_1_10:11367879-11367930:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3135375976562	2	516.314023	1030.61349	-0.060536	-3.1256E-05	-1.0547	-0.00054456	-1.1152	-0.00057582	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	0.80003	1	12155	12155		39.253	2.8061	1	29455000	+		67786	32105	47604	47679	73508	73508					0.0994112074295117
RNTPLSASSL	10	Unmodified	_RNTPLSASSL_					0	0	0			REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2830200195312	2	523.285463	1044.55637	-1.3535	-0.00070829	0.60892	0.00031864	-0.74462	-0.00038965	523.2858564945441	37.783	0.8711	37.7	37.503	38.374	-0.082516					45	24	2	0	0	0	0.52765	1	3105	3105		85.161	2.8558	1	7742700	+		67787	35178	47605	47680	73509	73509					0.03587653466570373
RNTQLSGTAM	10	Unmodified	_RNTQLSGTAM_					0	0	0			REV__ENST00000523241.5_1_9:36840281-36840326:-|nuORF	REV__ENST00000523241.5_1_9:36840281-36840326:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7691650390625	2	539.769123	1077.52369	2.2744	0.0012276	-1.6367	-0.00088344	0.63766	0.00034419	539.7677109147586	19.153	1.4159	19.22	18.553	19.969	0.066195					72	28	3	0	0	0	1.0122	1	337	337		44.377	7.2181	1	193490	+		67788	34350	47606	47681	73510	73510					-0.011968769279292246
RNTRKKNKRVT	11	Unmodified	_RNTRKKNKRVT_					0	0	0			REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.62384033203125	3	467.623414	1399.84841	0.98972	0.00046281	-0.26289	-0.00012294	0.72682	0.00033988	467.6232186790615	106.95	0.65829	106.95	106.77	107.43	0					56	18	5	0	0	0	1.0648	1	13748	13748		21.032	1.4053	1	698760	+		67789	27105	47607	47682	73511	73511					0.16448231271192526
RNTRKKNKRVT	11	Unmodified	_RNTRKKNKRVT_					0	0	0			REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.6238708496094	3	467.623414	1399.84841	0.3269	0.00015287	0.4024	0.00018817	0.7293	0.00034104	467.6235691549318	106.94	0.72211	106.94	106.72	107.44	-0.003479					44	23	4	0	0	0	1.0674	1	13689	13689		20.315	3.1483	1	488480	+		67790	27105	47607	47682	73512	73512					0.16448231271192526
RNTRKKNKRVT	11	Unmodified	_RNTRKKNKRVT_					0	0	0			REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.6240539550781	3	467.623414	1399.84841	0.094959	4.4405E-05	0.66364	0.00031033	0.7586	0.00035474	467.62365324391635	107.08	0.60744	106.96	106.74	107.35	-0.12381					60	20	4	0	0	0	1.0674	1	13331	13331		20.315	1.784	1	609420	+		67791	27105	47607	47682	73513	73513					0.16448231271192526
RNTRKKNKRVT	11	Unmodified	_RNTRKKNKRVT_					0	0	0			REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.62371826171875	3	467.623414	1399.84841	-1.1469	-0.0005363	1.8121	0.00084736	0.66519	0.00031106	467.62416997487236	107.17	0.54526	107.04	106.79	107.33	-0.1346					60	21	4	0	0	0	1.0558	1	13314	13314		23.514	4.2517	1	487560	+		67792	27105	47607	47682	73514	73514					0.16448231271192526
RNTSKLNLN	9	Unmodified	_RNTSKLNLN_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-4|MROH7;nc|ENSG00000184313|Q68CQ1-8|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.298828125	2	530.298904	1058.58326	2.5602	0.0013577	-3.4263	-0.001817	-0.86606	-0.00045927	530.2971861809157	18.015	1.4728	18.015	17.548	19.021	0					66	29	5	0	0	0	0.80003	1	263	263		39.253	0.44669	1	4024600			67793	9326	47608	47683	73515	73515					0.05630762077748841
RNTTSEATF	9	Unmodified	_RNTTSEATF_					0	0	0		ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.74755859375	2	513.74617	1025.47779	0.59282	0.00030456	2.8838	0.0014815	3.4766	0.0017861	513.747565142922	19.256	2.0293	19.256	18.674	20.704	0					85	41	3	0	0	0	0.43973	1	385	385		63.306	5.495	1	168110			67794	10400	47609	47684	73516	73516					-0.03393198838534772
RNVEYEIWLKS	11	Unmodified	_RNVEYEIWLKS_					0	0	0		nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4;ENST00000455611.6_1_4:146049153-146095893:-|nuORF	nc|ENSG00000164164|Q01804-5|OTUD4	nc|ENSG00000164164|Q01804-5|OTUD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7823486328125	3	479.589265	1435.74596	-0.11923	-5.7181E-05	2.3686	0.0011359	2.2493	0.0010788	479.92467289001564	43.727	0.41869	43.623	43.471	43.889	-0.10468					15	10	2	0	0	0	0.024869	1	4051	4051		4.8861	0	1	131620			67795	7229	47610	47685	73517	73517					0.045521006890794524
RNVIERLQE	9	Unmodified	_RNVIERLQE_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.8255615234375	2	578.825286	1155.63602	-0.35909	-0.00020785	0.17258	9.9891E-05	-0.18652	-0.00010796	578.8252200933243	19.047	0.44398	18.928	18.707	19.151	-0.11872					21	8	3	0	0	0	0.97973	1	351	351		24.519	0	1	150920			67796	4210	47611	47686	73518	73518					0.0644272014053513
RNVIERLQE	9	Unmodified	_RNVIERLQE_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	578.825286	1155.63602	0.70571	0.00040848	-0.8936	-0.00051724	-0.18789	-0.00010875	578.824666973538	18.841	0.49243	18.841	18.577	19.07	0	-0.10884	0.00016213	NaN	24.519	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165950			67797	4210	47611	47686							0.0644272014053513
RNVIERLQE	9	Unmodified	_RNVIERLQE_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	578.825286	1155.63602	3.0075	0.0017408	-3.0365	-0.0017576	-0.028971	-1.6769E-05	578.823311770708	19.018	0.49229	19.081	18.845	19.337	0.063307	0.13074	-0.0023186	NaN	24.519	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87941			67798	4210	47611	47686							0.0644272014053513
RNVKELEVL	9	Unmodified	_RNVKELEVL_					0	0	0		ENST00000475274.1_1_17:58322664-58322841:-|nuORF	ENST00000475274.1_1_17:58322664-58322841:-|nuORF	ENST00000475274.1_1_17:58322664-58322841:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.7742309570312	2	550.327131	1098.63971	-1.5128	-0.00083253	0.70243	0.00038657	-0.81036	-0.00044596	550.3273818349807	44.153	0.41344	44.008	43.781	44.194	-0.14471					24	11	3	0	0	0	0.024405	1	4151	4151		35.618	0	1	423280			67799	15055	47612	47687	73519	73519					0.09433389914443069
RNVKNVTKPLN	11	Unmodified	_RNVKNVTKPLN_					0	0	0		ENST00000596528.1_1_19:23541540-23541639:-|nuORF	ENST00000596528.1_1_19:23541540-23541639:-|nuORF	ENST00000596528.1_1_19:23541540-23541639:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8825073242188	2	641.883136	1281.75172	1.496	0.00096027	-2.6337	-0.0016905	-1.1376	-0.00073023	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	1.0292	1	12268	12268		30.318	2.2362	1	2979200			67800	17433	47613	47688	73520	73520					0.12211243991418996
RNVKNVTKPLN	11	Unmodified	_RNVKNVTKPLN_					0	0	0		ENST00000596528.1_1_19:23541540-23541639:-|nuORF	ENST00000596528.1_1_19:23541540-23541639:-|nuORF	ENST00000596528.1_1_19:23541540-23541639:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8823852539062	2	641.883136	1281.75172	-0.57437	-0.00036868	-0.65226	-0.00041867	-1.2266	-0.00078735	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0465	1	11632	11632		26.063	0.48933	1	1351900			67801	17433	47613	47688	73521	73521					0.12211243991418996
RNVLHRDLK	9	Unmodified	_RNVLHRDLK_					0	0	0		ENSG00000164885|ENST00000485972|CDK5	ENSG00000164885|ENST00000485972|CDK5	ENSG00000164885|ENST00000485972|CDK5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8430786132812	2	575.843813	1149.67307	-0.082095	-4.7274E-05	-1.351	-0.00077795	-1.4331	-0.00082522	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	0.87448	1	11119	11119		34.173	0	1	1475600			67802	7334	47614	47689	73522	73522					0.10422436476960684
RNVNCLKNV	9	Unmodified	_RNVNCLKNV_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2886352539062	2	530.290025	1058.5655	-0.82167	-0.00043573	-2.1942	-0.0011636	-3.0159	-0.0015993	530.2886685901052	45.63	0.77491	45.63	45.246	46.021	0					59	22	4	0	0	0	0.43973	1	4438	4438		63.306	9.9548	1	8452700			67803	6900	47615	47690	73523	73523					0.038557235512371335
RNVNCLKNV	9	Unmodified	_RNVNCLKNV_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2885131835938	2	530.290025	1058.5655	-0.97471	-0.00051688	-2.0074	-0.0010645	-2.9822	-0.0015814	530.2887112521873	45.69	0.71638	45.539	45.309	46.026	-0.15157					52	20	5	0	0	0	0.4752	1	4444	4444		60.972	4.5381	1	7409300			67804	6900	47615	47690	73524	73524					0.038557235512371335
RNVNCLKNV	9	Unmodified	_RNVNCLKNV_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2881469726562	2	530.290025	1058.5655	-0.31159	-0.00016523	-2.6486	-0.0014045	-2.9602	-0.0015698	530.2884227227145	45.611	0.61437	45.655	45.344	45.958	0.043877					41	17	3	0	0	0	0.20967	2	4385	4385;4397		87.754	27.636	1	7909800			67805	6900	47615	47690	73525;73526	73525					0.038557235512371335
RNVNCLKNV	9	Unmodified	_RNVNCLKNV_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.290025	1058.5655	-0.15056	-7.9842E-05	-4.4704	-0.0023706	-4.621	-0.0024505	530.2874175898656	45.747	0.72196	45.65	45.393	46.115	-0.096649	0.022464	-0.0016598	NaN	87.754	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1417300			67806	6900	47615	47690							0.038557235512371335
RNVNCLKNV	9	Unmodified	_RNVNCLKNV_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.290025	1058.5655	-0.63001	-0.00033409	-3.5248	-0.0018692	-4.1548	-0.0022033	530.2880487169779	45.94	0.55154	45.679	45.416	45.968	-0.26118	0.050665	-0.00065691	NaN	87.754	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1516700			67807	6900	47615	47690							0.038557235512371335
RNVNCLKNV	9	Unmodified	_RNVNCLKNV_					0	0	0		ENSG00000161914|ENST00000293771|ZNF653;ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENSG00000161914|ENST00000293771|ZNF653	ENSG00000161914|ENST00000293771|ZNF653	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.290025	1058.5655	-0.82444	-0.00043719	-4.3212	-0.0022915	-5.1457	-0.0027287	530.287441921249	45.817	0.65339	45.615	45.391	46.044	-0.20226	-0.013165	-0.0015015	NaN	87.754	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1478500			67808	6900	47615	47690							0.038557235512371335
RNVVVVDV	8	Unmodified	_RNVVVVDV_					0	0	0		HADHB|p.G59V|1|0.23|ENSG00000138029|chr2:26263446-26263446|G/T|missense_variant	HADHB|p.G59V|1|0.23|ENSG00000138029|chr2:26263446-26263446|G/T|missense_variant	HADHB|p.G59V|1|0.23|ENSG00000138029|chr2:26263446-26263446|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2690124511719	2	450.269084	898.523616	-0.73235	-0.00032976	0.55365	0.00024929	-0.1787	-8.0462E-05	450.26915918046706	43.908	1.0411	43.763	43.353	44.394	-0.14471					71	29	4	0	0	0	0.59392	1	4136	4136		76.847	7.7537	1	6393400			67809	17703	47616	47691	73527	73527					0.07029491134380805
RNWADLNVY	9	Unmodified	_RNWADLNVY_					0	0	0			REV__ENSG00000070614|ENST00000261797|NDST1	REV__ENSG00000070614|ENST00000261797|NDST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.297607421875	2	575.78563	1149.55671	-2.0063	-0.0011552	-3.3442	-0.0019256	-5.3505	-0.0030807	575.7834438389518	44.052	0.31511	44.052	43.836	44.151	0					14	8	2	0	0	0	0.024447	1	4149	4149		40.778	0	1	154840	+		67810	20431	47617	47692	73528	73528					-0.01208926813569633
RNWRIQNP	8	Unmodified	_RNWRIQNP_					0	0	0			REV__ENSG00000105767|ENST00000222374|CADM4	REV__ENSG00000105767|ENST00000222374|CADM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2957153320312	2	542.293956	1082.57336	-0.40057	-0.00021723	3.1028	0.0016826	2.7023	0.0014654	542.2955453600698	18.409	0.88302	18.277	17.86	18.743	-0.13147					43	17	3	0	0	0	1.0239	1	271	271		33.516	1.5607	1	666370	+		67811	21564	47618	47693	73529	73529					0.03537618863038006
RNWRKRTKRFV	11	Unmodified	_RNWRKRTKRFV_					0	0	0			REV__ENST00000476966.5_1_1:156383609-156383882:-|nuORF	REV__ENST00000476966.5_1_1:156383609-156383882:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3094482421875	3	516.31117	1545.91168	-0.67678	-0.00034943	-1.2189	-0.00062934	-1.8957	-0.00097877	516.310048466896	102.98	1.3455	102.98	102.39	103.74	0					72	32	4	0	0	0	0.024888	1	13294	13294		9.6461	6.2374	1	268670	+		67812	33318	47619	47694	73530	73530					0.16056216779065835
RNYLYIRIK	9	Unmodified	_RNYLYIRIK_					0	0	0			REV__ENST00000372285.7_1_20:44757697-44758201:+|nuORF	REV__ENST00000372285.7_1_20:44757697-44758201:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.868408203125	2	619.87204	1237.72953	-1.5196	-0.00094193	-3.1095	-0.0019275	-4.6291	-0.0028694	619.87000320551	104.9	0.59966	104.77	104.47	105.07	-0.13099					38	19	3	0	0	0	0.98697	1	13070	13070		23.042	2.0956	1	162010	+		67813	31196	47620	47695	73531	73531					0.12017064313636183
RPAAAETRV	9	Unmodified	_RPAAAETRV_					0	0	0		ENST00000434408.1_3_22:41833373-41842568:-|nuORF	ENST00000434408.1_3_22:41833373-41842568:-|nuORF	ENST00000434408.1_3_22:41833373-41842568:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.78265380859375	2	485.775065	969.535577	-0.71828	-0.00034892	3.6401	0.0017682	2.9218	0.0014193	485.77750079398936	25.713	1.042	25.679	25.351	26.393	-0.034395					51	24	4	0	0	0	0.53979	1	1277	1277		56.721	6.6965	1	2338700			67814	14242	47621	47696	73532	73532					0.0495910787755065
RPAAIEGIR	9	Unmodified	_RPAAIEGIR_					0	0	0			REV__ENST00000587327.5_1_19:11546705-11546834:+|nuORF	REV__ENST00000587327.5_1_19:11546705-11546834:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7955017089844	2	491.793258	981.571963	-0.97809	-0.00048102	1.0345	0.00050874	0.056357	2.7716E-05	491.7936804982643	29.012	1.199	29.012	28.696	29.895	0					55	29	3	0	0	0	0.34489	1	1748	1748		69.628	5.4204	1	1714300	+		67815	35624	47622	47697	73533	73533					0.08043984774280943
RPAAIEGIR	9	Unmodified	_RPAAIEGIR_					0	0	0			REV__ENST00000587327.5_1_19:11546705-11546834:+|nuORF	REV__ENST00000587327.5_1_19:11546705-11546834:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	491.793258	981.571963	-0.17102	-8.4108E-05	1.3181	0.00064823	1.1471	0.00056412	491.79379680569684	28.767	1.1524	28.848	28.574	29.727	0.080811	-0.098723	0.0003247	NaN	69.628	63	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1908200	+		67816	35624	47622	47697							0.08043984774280943
RPAANPIQF	9	Unmodified	_RPAANPIQF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.28009033203125	2	507.279983	1012.54541	-0.44595	-0.00022622	-0.38445	-0.00019503	-0.8304	-0.00042125	507.27989582869645	49.861	1.2667	49.861	49.473	50.74	0					100	36	5	0	0	0	0.35646	2	5167	5167;5204		68.787	13.283	1	21196000			67817	7673	47623	47698	73534;73535	73534					0.039642958829290365
RPAANPIQF	9	Unmodified	_RPAANPIQF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2799987792969	2	507.279983	1012.54541	-0.078383	-3.9762E-05	-0.71418	-0.00036229	-0.79257	-0.00040205	507.279734531571	50.079	1.2699	49.928	49.52	50.79	-0.1512					104	36	5	0	0	0	0.18915	3	5173	5161;5173;5185		90.777	39.441	1	19859000			67818	7673	47623	47698	73536;73537;73538	73537					0.039642958829290365
RPAANPIQF	9	Unmodified	_RPAANPIQF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2802429199219	2	507.279983	1012.54541	-0.53355	-0.00027066	-0.1819	-9.2273E-05	-0.71545	-0.00036293	507.2799725785459	49.748	1.2785	49.823	49.391	50.669	0.074192					98	36	5	0	0	0	0.33245	2	5111	5098;5111		71.296	13.484	1	21543000			67819	7673	47623	47698	73539;73540	73540					0.039642958829290365
RPAAPAPPPP	10	Unmodified	_RPAAPAPPPP_					0	0	0			REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-2|MAPK8IP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.77587890625	2	485.777077	969.5396	-0.71828	-0.00034892	-0.50048	-0.00024312	-1.2188	-0.00059205	485.77750079398936	25.713	1.042	25.679	25.351	26.393	-0.034395					51	24	4	0	0	0	0.96083	1	1251	1251		50.025	9.4519	1	2338700	+		67820	19885	47624	47699	73541	73541					0.05361197371257731
RPAAPGQTPL	10	Unmodified	_RPAAPGQTPL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2852478027344	2	504.285266	1006.55598	-0.083538	-4.2127E-05	-0.47483	-0.00023945	-0.55836	-0.00028157	504.28486174428446	37.279	0.69026	37.216	36.866	37.556	-0.063385					53	18	4	0	0	0	0.50517	1	3011	3011		87.696	36.361	1	1617600			67821	5872	47625	47700	73542	73542					0.0529627853737793
RPAAPGQTPL	10	Unmodified	_RPAAPGQTPL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.285266	1006.55598	0.42046	0.00021203	-0.88009	-0.00044382	-0.45962	-0.00023178	504.28460987555735	37.365	0.81458	37.365	36.887	37.702	0	0.031739	-0.00022403	NaN	87.696	56	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1565800			67822	5872	47625	47700							0.0529627853737793
RPAAPGQTPL	10	Unmodified	_RPAAPGQTPL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.285266	1006.55598	0.059815	3.0164E-05	-0.64997	-0.00032777	-0.59016	-0.00029761	504.2847480988129	37.386	0.75211	37.418	37.035	37.787	0.032269	0.08512	8.0584E-06	NaN	87.696	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1364900			67823	5872	47625	47700							0.0529627853737793
RPAAPLGPGHA	11	Unmodified	_RPAAPLGPGHA_					0	0	0			REV__ENST00000545954.5_1_17:41622643-41623598:-|nuORF	REV__ENST00000545954.5_1_17:41622643-41623598:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	522.2907104492188	2	522.290882	1042.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.561	1	20.63	20.13	21.13	0.068901								0	0	0	1.0073	1	512	512		44.117	1.2525	1		+		67824	34832	47626	47701	73543	73543					0.04763100631521411
RPAARPSP	8	Unmodified	_RPAARPSP_					0	0	0			REV__ENSG00000176956|ENST00000342752|LY6H	REV__ENSG00000176956|ENST00000342752|LY6H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2471923828125	2	426.245944	850.477334	-0.65811	-0.00028052	2.5431	0.001084	1.885	0.00080346	426.2478440514205	103.15	1.0941	103.15	102.81	103.9	0					53	26	4	0	0	0	0.93274	1	13244	13244		47.916	1.9636	1	879380	+		67825	27067	47627	47702	73544	73544					0.0461147102294035
RPAASCVSL	9	Carbamidomethyl (C)	_RPAASC(Carbamidomethyl (C))VSL_	RPAASC(1)VSL		RPAASC(69)VSL		0	1	0			REV__ENST00000568961.5_1_16:71915334-71918023:-|nuORF	REV__ENST00000568961.5_1_16:71915334-71918023:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	480.750201	959.48585	-0.011205	-5.3867E-06	-0.31588	-0.00015186	-0.32708	-0.00015724	480.75001617987033	32.716	4.5628	32.779	30.991	35.554	0.062885					321	117	4	0	0	0	0.35646	1	2298	2298		68.787	13.283	1	7848800	+		67826	30234	47628	47703	73545	73545	395				0.00448656877256326
RPAASVRP	8	Unmodified	_RPAASVRP_					0	0	0			REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF	REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2525329589844	2	427.253769	852.492984	-0.58472	-0.00024982	0.18764	8.0168E-05	-0.39709	-0.00016966	427.2539224512093	23.349	2.0442	23.288	22.52	24.564	-0.06086					112	46	4	0	0	0	1.0516	1	945	945		29.15	1.2673	1	17423000	+		67827	33256	47629	47704	73546	73546					0.0608375753998871
RPACLPREA	9	Unmodified	_RPACLPREA_					0	0	0			REV__ENSG00000237988|ENST00000641137|OR2I1P	REV__ENSG00000237988|ENST00000641137|OR2I1P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7710266113281	2	506.771468	1011.52838	-1.013	-0.00051337	0.74187	0.00037596	-0.27114	-0.0001374	506.771705977175	20.377	1.2108	20.377	19.689	20.9	0					58	24	3	0	0	0	0.72494	1	549	549		44.377	5.1244	1	483790	+		67828	28946	47630	47705	73547	73547					0.023080520054804765
RPACRDVS	8	Unmodified	_RPACRDVS_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2283020019531	2	452.226894	902.439234	0.13816	6.248E-05	2.5168	0.0011382	2.655	0.0012007	452.228130338477	102.79	1.1452	102.8	102.46	103.6	0.0054245					58	27	4	0	0	0	1.0239	1	13151	13151		33.516	3.674	1	3091700		+	67829	543	47631	47706	73548	73548					-0.015887829540361054
RPADHERP	8	Unmodified	_RPADHERP_					0	0	0		ENST00000260502.10_1_1:94140382-94147383:-|nuORF	ENST00000260502.10_1_1:94140382-94147383:-|nuORF	ENST00000260502.10_1_1:94140382-94147383:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2705993652344	2	489.249215	976.483876	-0.42493	-0.00020789	3.7942	0.0018563	3.3693	0.0016484	489.2507704480259	38.864	0.28024	38.864	38.761	39.041	0					16	7	3	0	0	0	0.027866	1	3289	3289		62.107	17.991	1	365270			67830	11451	47632	47707	73549	73549					-0.0053063581634660295
RPADNVLVL	9	Unmodified	_RPADNVLVL_					0	0	0			REV__RAPGEF3|p.A314V|1|0.13|ENSG00000079337|chr12:47749490-47749490|G/A|missense_variant	REV__RAPGEF3|p.A314V|1|0.13|ENSG00000079337|chr12:47749490-47749490|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7963562011719	2	498.795466	995.57638	3.2358	0.001614	-1.6952	-0.00084557	1.5406	0.00076844	498.79445005317547	18.158	0.74733	17.915	17.677	18.424	-0.24256					30	14	3	0	0	0	0.77768	1	239	239		40.778	0	1	198740	+		67831	37427	47633	47708	73550	73550					0.07841449197167094
RPADRRTQ	8	Unmodified	_RPADRRTQ_					0	0	0		ENST00000264552.13_1_19:55918184-55919114:-|nuORF;ENST00000589978.1_1_19:55915759-55919114:-|nuORF	ENST00000264552.13_1_19:55918184-55919114:-|nuORF	ENST00000264552.13_1_19:55918184-55919114:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.2740478515625	2	500.275764	998.536974	0.40331	0.00020177	-4.0102	-0.0020062	-3.6069	-0.0018044	500.2735875061891	16.95	0.15563	16.804	16.708	16.863	-0.14616					9	5	2	0	0	0	1.0574	1	106	106		23.042	2.0956	1	24412			67832	11563	47634	47709	73551	73551					0.037647419663244364
RPADSAQL	8	Unmodified	_RPADSAQL_					0	0	0		nc|ENSG00000068323|P19532-2|TFE3;ENSG00000068323|ENST00000315869|TFE3	nc|ENSG00000068323|P19532-2|TFE3	nc|ENSG00000068323|P19532-2|TFE3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.227294921875	2	429.227417	856.44028	-0.48708	-0.00020907	1.5715	0.00067451	1.0844	0.00046544	429.2278444534237	27.267	1.4635	27.267	26.573	28.037	0					69	37	5	0	0	0	0.53523	1	1491	1491		82.305	8.05	1	1373900			67833	1379	47635	47710	73552	73552					0.0063175468651479605
RPADVPPPE	9	Unmodified	_RPADVPPPE_					0	0	0			REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF	REV__ENST00000243082.4_1_12:54367506-54369194:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2705078125	2	489.256174	976.497795	-1.069	-0.000523	1.1156	0.00054582	0.046642	2.282E-05	489.2565906259797	40.259	1.5325	40.282	39.063	40.595	0.023003					88	42	3	0	0	0	0.023239	1	3280	3280		54.776	1.4249	1	3163000	+		67834	29457	47636	47711	73553	73553					0.008605968920846863
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_		RPAEKLVTSM(1)		RPAEKLVTSM(120)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.3118896484375	2	574.310623	1146.60669	-0.36934	-0.00021212	0.36075	0.00020718	-0.0085928	-4.935E-06	574.3106586831013	27.574	0.67971	27.561	27.277	27.957	-0.012983					51	17	4	0	0	0	0.22838	1	1511	1511		117.53	21.711	1	953080			67835	9931	47637	47712	73554	73554		414			0.03925439800059394
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_		RPAEKLVTSM(1)		RPAEKLVTSM(130)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.3131713867188	2	574.310623	1146.60669	-1.3501	-0.00077536	1.6225	0.00093179	0.27238	0.00015643	574.3113350892559	27.363	0.7353	27.444	27.136	27.872	0.081291					47	19	4	0	0	0	0.13984	1	1442	1442		128.6	40.906	1	1189000			67836	9931	47637	47712	73555	73555		414			0.03925439800059394
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_					0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	574.310623	1146.60669	-1.4437	-0.00082912	1.5532	0.00089203	0.10954	6.2908E-05	574.3113162985102	27.59	0.63791	27.59	27.286	27.924	0	0.058026	0.00040153	NaN	128.6	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	959610			67837	9931	47637	47712				414			0.03925439800059394
RPAEVGGMQL	10	Oxidation (M)	_RPAEVGGM(Oxidation (M))QL_		RPAEVGGM(1)QL		RPAEVGGM(87)QL	0	0	1		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2737426757812	2	537.274041	1072.53353	0.089621	4.8151E-05	-0.42431	-0.00022797	-0.33469	-0.00017982	537.2737472415457	36.786	1.1921	36.786	36.44	37.632	0					80	31	4	0	0	0	0.51239	3	2952	2942;2952;2964		86.882	30.161	1	4929100			67838	4324	47638	47713	73556;73557;73558	73557		172			0.00016311077456521161
RPAEVGGMQL	10	Oxidation (M)	_RPAEVGGM(Oxidation (M))QL_		RPAEVGGM(1)QL		RPAEVGGM(97)QL	0	0	1		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.2733764648438	2	537.274041	1072.53353	-0.7959	-0.00042762	0.25503	0.00013702	-0.54087	-0.0002906	537.2741013531668	36.619	1.1916	36.577	36.244	37.436	-0.042458					71	31	4	0	0	0	0.41983	3	2923	2901;2912;2923		96.665	30.236	1	4929500			67839	4324	47638	47713	73559;73560;73561	73561		172			0.00016311077456521161
RPAEVGGMQL	10	Oxidation (M)	_RPAEVGGM(Oxidation (M))QL_		RPAEVGGM(1)QL		RPAEVGGM(97)QL	0	0	1		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2734985351562	2	537.274041	1072.53353	-0.99368	-0.00053388	0.5963	0.00032038	-0.39738	-0.0002135	537.2743399698558	36.741	1.2434	36.779	36.478	37.721	0.038044					72	32	4	0	0	0	0.41983	3	2885	2876;2885;2896		96.665	37.883	1	4976300			67840	4324	47638	47713	73562;73563;73564	73563		172			0.00016311077456521161
RPAEVGGMQL	10	Unmodified	_RPAEVGGMQL_					0	0	0		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.276123046875	2	529.276583	1056.53861	-0.55326	-0.00029283	-0.49624	-0.00026265	-1.0495	-0.00055548	529.2761587018214	49.044	1.0656	49.044	48.516	49.582	0					61	29	3	0	0	0	0.60734	2	5041	5029;5041		76.17	23.233	1	6646100			67841	4324	47638	47714	73565;73566	73566					0.012606149400880895
RPAEVGGMQL	10	Unmodified	_RPAEVGGMQL_					0	0	0		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2760620117188	2	529.276583	1056.53861	-0.5739	-0.00030375	-0.29562	-0.00015647	-0.86953	-0.00046022	529.2764058304962	49.216	0.95065	49.064	48.682	49.632	-0.15276					58	25	3	0	0	0	0.52143	2	5049	5037;5049		85.862	12.234	1	6363000			67842	4324	47638	47714	73567;73568	73568					0.012606149400880895
RPAEVGGMQL	10	Unmodified	_RPAEVGGMQL_					0	0	0		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2763671875	2	529.276583	1056.53861	-1.0344	-0.00054749	0.07728	4.0903E-05	-0.95712	-0.00050658	529.2766036724491	48.897	0.94397	48.971	48.596	49.54	0.074196					60	25	4	0	0	0	0.55987	3	4945	4945;4956;4967		81.525	14.031	1	5959500			67843	4324	47638	47714	73569;73570;73571	73569					0.012606149400880895
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32;nc|ENSG00000156804|Q969P5-2|FBXO32	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.8003540039062	2	518.800552	1035.58655	-0.42253	-0.00021921	-0.029356	-1.523E-05	-0.45189	-0.00023444	518.8003582762894	51.961	1.1433	51.961	51.568	52.711	0					81	30	4	0	0	0	0.094442	2	5549	5549;5564		112.41	41.115	1	6401900			67844	6551	47639	47715	73572;73573	73572					0.07018056922402138
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32;nc|ENSG00000156804|Q969P5-2|FBXO32	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.80029296875	2	518.800552	1035.58655	-0.32026	-0.00016615	-0.1793	-9.3018E-05	-0.49956	-0.00025917	518.8002698083053	52.08	1.0245	51.933	51.544	52.569	-0.14735					71	27	4	0	0	0	0.12602	2	5540	5540;5554		104.75	39.034	1	6315200			67845	6551	47639	47715	73574;73575	73574					0.07018056922402138
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32;nc|ENSG00000156804|Q969P5-2|FBXO32	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENST00000287396.2_1_8:124515615-124544254:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.8005981445312	2	518.800552	1035.58655	-1.2746	-0.00066124	0.6955	0.00036083	-0.57905	-0.00030041	518.8007721357324	51.786	1.0821	51.873	51.478	52.56	0.087006					74	28	4	0	0	0	0.091713	2	5461	5461;5473		113.41	46.097	1	5693900			67846	6551	47639	47715	73576;73577	73576					0.07018056922402138
RPAGAAARPP	10	Unmodified	_RPAGAAARPP_					0	0	0		ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENST00000447425.1_1_7:22813267-22813561:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.2781066894531	2	482.277775	962.540997	-0.29864	-0.00014403	0.73377	0.00035388	0.43514	0.00020986	482.2777864395047	20.209	1.1092	20.104	19.46	20.569	-0.10477					40	22	4	0	0	0	0.67706	2	500	490;500		68.787	7.8149	1	401580			67847	14467	47640	47716	73578;73579	73579					0.05822831460022826
RPAGAPQGGLL	11	Unmodified	_RPAGAPQGGLL_					0	0	0			REV__ENST00000545054.6_1_14:24563583-24563937:+|nuORF	REV__ENST00000545054.6_1_14:24563583-24563937:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.79833984375	2	518.79854	1035.58253	-1.3939	-0.00072316	1.0855	0.00056315	-0.30843	-0.00016001	518.7988768627044	30.846	1.4461	30.846	30.343	31.789	0					92	34	6	0	0	0	0.90725	1	2016	2016		51.193	12.439	1	3886000	+		67848	34816	47641	47717	73580	73580					0.06615967428706426
RPAGAPQGGLL	11	Unmodified	_RPAGAPQGGLL_					0	0	0			REV__ENST00000545054.6_1_14:24563583-24563937:+|nuORF	REV__ENST00000545054.6_1_14:24563583-24563937:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.798583984375	2	518.79854	1035.58253	-0.91098	-0.00047262	0.32672	0.0001695	-0.58427	-0.00030312	518.7986309815509	30.612	1.1942	30.686	30.378	31.572	0.074314					52	28	3	0	0	0	0.97926	1	1952	1952		41.427	2.1738	1	4010300	+		67849	34816	47641	47717	73581	73581					0.06615967428706426
RPAGISYRQ	9	Unmodified	_RPAGISYRQ_					0	0	0		ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2871704101562	2	524.28834	1046.56213	-0.71823	-0.00037656	-0.61258	-0.00032117	-1.3308	-0.00069773	524.2883013690289	28.489	1.1564	28.485	27.929	29.085	-0.0042019					84	27	6	0	0	0	0.42604	1	1657	1657		64.207	11.908	1	2638900			67850	9579	47642	47718	73582	73582					0.04070796768883156
RPAGISYRQ	9	Unmodified	_RPAGISYRQ_					0	0	0		ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENST00000428632.7_1_12:113682520-113726187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.286865234375	2	524.28834	1046.56213	-0.2719	-0.00014256	-0.84239	-0.00044165	-1.1143	-0.00058421	524.2881088611321	28.184	1.053	28.265	27.646	28.699	0.080811					61	25	5	0	0	0	0.80003	1	1576	1576		39.253	0.44669	1	3275100			67851	9579	47642	47718	73583	73583					0.04070796768883156
RPAGKGSITI	10	Unmodified	_RPAGKGSITI_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.30078125	2	500.300916	998.587279	-1.1408	-0.00057074	0.32397	0.00016208	-0.81683	-0.00040866	500.30089947209575	29.97	0.81556	29.97	29.652	30.467	0					43	19	3	0	0	0	0.80817	1	1881	1881		60.118	16.001	1	880320			67852	1797	47643	47719	73584	73584					0.08792851571456595
RPAGKGSITI	10	Unmodified	_RPAGKGSITI_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3009338378906	2	500.300916	998.587279	-0.63532	-0.00031785	-0.17611	-8.8106E-05	-0.81142	-0.00040596	500.3007084937186	29.933	1.0678	29.942	29.597	30.665	0.0086708					49	25	3	0	0	0	0.91678	1	1864	1864		52.937	12.159	1	935750			67853	1797	47643	47719	73585	73585					0.08792851571456595
RPAGLILLF	9	Unmodified	_RPAGLILLF_					0	0	0		chr3:141875096-141903620|302|13.78|0.22|5.95|+|2|None,ATP1B3|1	chr3:141875096-141903620|302|13.78|0.22|5.95|+|2|None,ATP1B3|1	chr3:141875096-141903620|302|13.78|0.22|5.95|+|2|None,ATP1B3|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2082214355469	2	500.32112	998.627687	-0.069775	-3.491E-05	2.3143	0.0011579	2.2445	0.001123	500.82266267478616	42.084	0.32387	41.961	41.752	42.076	-0.12299					14	8	3	0	0	0	0.024517	1	3742	3742		35.201	30.884	1	115110			67854	389	47644	47720	73586	73586					0.12831817961887282
RPAGLSPTL	9	Unmodified	_RPAGLSPTL_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.26910400390625	2	456.269084	910.523616	-0.016669	-7.6056E-06	-0.65379	-0.0002983	-0.67046	-0.00030591	456.2688010774782	45.082	1.6533	45.082	44.725	46.378	0					122	47	5	0	0	0	0.021872	2	4329	4329;4363		148.04	14.23	1	24759000			67855	5748	47645	47721	73587;73588	73587					0.06477491134376123
RPAGLSPTL	9	Unmodified	_RPAGLSPTL_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2691650390625	2	456.269084	910.523616	-0.49395	-0.00022538	-0.074134	-3.3825E-05	-0.56809	-0.0002592	456.26906969877064	45.2	1.5497	45.051	44.697	46.247	-0.1488					108	44	5	0	0	0	0.016871	4	4352	4340;4352;4363;4377		152.47	5.193	1	26120000			67856	5748	47645	47721	73589;73590;73591;73592	73590					0.06477491134376123
RPAGLSPTL	9	Unmodified	_RPAGLSPTL_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.26910400390625	2	456.269084	910.523616	0.05305	2.4205E-05	-0.70287	-0.0003207	-0.64982	-0.00029649	456.26878214586753	45.083	1.677	45.127	44.756	46.433	0.043877					102	48	4	0	0	0	0.047345	1	4300	4300		129.68	14.224	1	26588000			67857	5748	47645	47721	73593	73593					0.06477491134376123
RPAGLSPTL	9	Unmodified	_RPAGLSPTL_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.269084	910.523616	-0.70819	-0.00032312	0.57274	0.00026132	-0.13545	-6.18E-05	456.26928755451956	45.023	0.3376	44.924	44.71	45.048	-0.099445	-0.078484	0.00087826	NaN	152.47	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229820			67858	5748	47645	47721							0.06477491134376123
RPAGLSPTL	9	Unmodified	_RPAGLSPTL_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.269084	910.523616	-0.35514	-0.00016204	-0.041473	-1.8923E-05	-0.39661	-0.00018096	456.26909236026347	45.179	0.45457	44.927	44.67	45.124	-0.25252	-0.075724	0.00031777	NaN	152.47	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212200			67859	5748	47645	47721							0.06477491134376123
RPAGLSPTL	9	Unmodified	_RPAGLSPTL_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4;nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.269084	910.523616	-0.38996	-0.00017793	0.33654	0.00015355	-0.053426	-2.4377E-05	456.26900391964676	45.114	0.46078	44.903	44.595	45.056	-0.21109	-0.099322	0.00066272	NaN	152.47	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201480			67860	5748	47645	47721							0.06477491134376123
RPAGRHQI	8	Unmodified	_RPAGRHQI_					0	0	0			REV__ENST00000558945.5_1_15:41590339-41590513:+|nuORF	REV__ENST00000558945.5_1_15:41590339-41590513:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.77020263671875	2	467.770117	933.525681	3.4025	0.0015916	-3.5263	-0.0016495	-0.12375	-5.7888E-05	467.76843633358493	17.869	0.93027	17.869	17.647	18.577	0					33	18	2	0	0	0	0.68535	1	216	216		68.485	10.673	1	1027900	+		67861	35105	47646	47722	73594	73594					0.05625964662840488
RPAGVNKH	8	Unmodified	_RPAGVNKH_					0	0	0		ENSG00000170190|ENST00000329783|SLC16A5	ENSG00000170190|ENST00000329783|SLC16A5	ENSG00000170190|ENST00000329783|SLC16A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.7515869140625	2	439.751393	877.488233	1.0675	0.00046945	-0.75189	-0.00033065	0.31565	0.00013881	439.75089146173684	20.702	1.033	20.771	20.316	21.349	0.068901					42	20	3	0	0	0	0.71833	2	515	515;538		65.803	5.5092	1	431560			67862	8013	47647	47723	73595;73596	73595					0.044588733972204864
RPAHAMGVG	9	Unmodified	_RPAHAMGVG_					0	0	0			REV__ENST00000477923.1_1_10:135093272-135094982:-|nuORF	REV__ENST00000477923.1_1_10:135093272-135094982:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.7615051269531	2	448.231979	894.449405	-0.4331	-0.00019413	-4.449	-0.0019942	-4.8821	-0.0021883	448.2296589215767	33.346	0.28574	33.346	33.135	33.421	0					10	7	2	0	0	0	0.024497	1	2367	2367		13.775	0	1	80191	+		67863	33347	47648	47724	73597	73597					-0.0020417522879370154
RPAHTLDTAG	10	Unmodified	_RPAHTLDTAG_					0	0	0		ENST00000356641.7_2_11:120357082-120357214:+|nuORF	ENST00000356641.7_2_11:120357082-120357214:+|nuORF	ENST00000356641.7_2_11:120357082-120357214:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.76953125	2	519.76998	1037.52541	-0.48433	-0.00025174	0.13074	6.7957E-05	-0.35358	-0.00018378	519.769958266437	22.197	0.76038	22.121	21.841	22.602	-0.075296					44	15	4	0	0	0	1.0122	1	761	761		44.377	1.5129	1	569110			67864	12675	47649	47725	73598	73598					0.008145001523189421
RPAIAAPCL	9	Unmodified	_RPAIAAPCL_					0	0	0			REV__SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|4|1|sense	REV__SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|4|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2621154785156	2	456.260205	910.505857	0.19437	8.8684E-05	4.0979	0.0018697	4.2923	0.0019584	456.2619743778137	18.948	0.49133	18.829	18.61	19.101	-0.11872					21	9	3	0	0	0	0.60698	1	339	339		52.299	3.0884	1	182420	+		67865	37631	47650	47726	73599	73599					0.04702452607864416
RPAIAAPCL	9	Unmodified	_RPAIAAPCL_					0	0	0			REV__SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|4|1|sense	REV__SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|4|1|sense	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	456.260205	910.505857	0.19437	8.8684E-05	4.0979	0.0018697	4.2923	0.0019584	456.2619743778137	18.948	0.49133	18.829	18.61	19.101	-0.11872	0.030719	0.0014849	NaN	52.299	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182420	+		67866	37631	47650	47726							0.04702452607864416
RPAKNKPKV	9	Unmodified	_RPAKNKPKV_					0	0	0			REV__KIF21A|p.R1154P|1|0.22|ENSG00000139116|chr12:39322878-39322878|C/G|missense_variant	REV__KIF21A|p.R1154P|1|0.22|ENSG00000139116|chr12:39322878-39322878|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.774658203125	2	519.33255	1036.65055	-0.57291	-0.00029753	0.16267	8.4477E-05	-0.41025	-0.00021306	519.3325966713871	43.347	0.86624	43.208	42.885	43.751	-0.13929					66	23	4	0	0	0	0.024405	1	4013	4013		27.882	11.409	1	1663700	+		67867	36181	47651	47727	73600	73600					0.13368837079360674
RPALDRSPGRD	11	Unmodified	_RPALDRSPGRD_					0	0	0		ENST00000508906.6_3_6:26370772-26373254:+|nuORF;ENST00000604202.1_1_6:26373056-26373254:+|nuORF	ENST00000508906.6_3_6:26370772-26373254:+|nuORF	ENST00000508906.6_3_6:26370772-26373254:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.74267578125	3	413.889937	1238.64798	-0.13074	-5.4112E-05	3.6181	0.0014975	3.4874	0.0014434	413.8912989461939	37.475	0.49123	37.412	37.198	37.69	-0.063385					37	13	4	0	0	0	0.024746	1	3021	3021		33.039	4.9579	1	627100			67868	15796	47652	47728	73601	73601					0.03820336883768505
RPALHDVL	8	Unmodified	_RPALHDVL_					0	0	0		ENST00000419593.5_1_20:43991879-44037446:+|nuORF	ENST00000419593.5_1_20:43991879-44037446:+|nuORF	ENST00000419593.5_1_20:43991879-44037446:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.7696838378906	2	460.769252	919.52395	0.36923	0.00017013	-0.4625	-0.00021311	-0.093275	-4.2978E-05	460.7689552744668	39.874	1.5905	39.874	39.495	41.085	0					111	44	4	0	0	0	0.33369	1	3458	3458		106.42	0	1	8169800			67869	13955	47653	47729	73602	73602					0.060969108542167305
RPALPISFH	9	Unmodified	_RPALPISFH_					0	0	0			REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7698364257812	2	519.298176	1036.5818	-1.3043	-0.00067731	3.9972	0.0020758	2.693	0.0013985	519.3023887148146	21.954	0.77356	22.026	21.637	22.411	0.071487					32	15	3	0	0	0	0.024457	1	696	696		45.952	13.997	1	55647	+		67870	35870	47654	47730	73603	73603					0.06497172779654647
RPALPISFH	9	Unmodified	_RPALPISFH_					0	0	0			REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.298176	1036.5818	0.1547	8.0338E-05	8.9589	0.0046524	9.1136	0.0047327	519.3025265012944	22.341	0.79174	22.152	21.628	22.42	-0.18894	-0.0067959	0.00049186	NaN	45.952	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106950	+		67871	35870	47654	47730							0.06497172779654647
RPALPISFH	9	Unmodified	_RPALPISFH_					0	0	0			REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.298176	1036.5818	-0.37446	-0.00019445	9.4162	0.0048898	9.0417	0.0046954	519.3026768610155	22.443	0.84008	22.258	21.667	22.507	-0.18539	0.098856	0.00096676	NaN	45.952	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114630	+		67872	35870	47654	47730							0.06497172779654647
RPALPISFH	9	Unmodified	_RPALPISFH_					0	0	0			REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	REV__ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.298176	1036.5818	0.27493	0.00014277	9.0013	0.0046744	9.2763	0.0048172	519.3024243071436	22.464	0.85157	22.262	21.663	22.515	-0.20199	0.10318	0.00053591	NaN	45.952	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106710	+		67873	35870	47654	47730							0.06497172779654647
RPALQPGTK	9	Unmodified	_RPALQPGTK_					0	0	0			REV__ENSG00000164142|ENST00000435205|FHIP1A	REV__ENSG00000164142|ENST00000435205|FHIP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2704162597656	2	484.287808	966.561064	-0.68536	-0.00033191	0.45725	0.00022144	-0.22811	-0.00011047	484.2875108644532	31.919	0.47826	31.988	31.766	32.244	0.068962					16	11	2	0	0	0	0.024438	1	2114	2114		36.447	0	1	98639	+		67874	25705	47655	47731	73604	73604					0.07644582399996125
RPALRVDH	8	Unmodified	_RPALRVDH_					0	0	0		ENST00000265827.7_1_7:127031641-127032559:-|nuORF	ENST00000265827.7_1_7:127031641-127032559:-|nuORF	ENST00000265827.7_1_7:127031641-127032559:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.27783203125	2	482.277775	962.540997	0.15491	7.471E-05	0.020314	9.7969E-06	0.17523	8.4507E-05	482.2775757578581	19.87	0.95692	19.87	19.366	20.323	0					36	19	4	0	0	0	0.89627	1	474	474		51.335	3.4199	1	385420			67875	11602	47656	47732	73605	73605					0.05822831460022826
RPALTGIDR	9	Unmodified	_RPALTGIDR_					0	0	0		ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	ZNF516|p.M844Cfs*131|1|0.34|ENSG00000101493|chr18:76379585-76379585|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7897644042969	2	499.790715	997.566878	-1.1573	-0.00057842	1.3785	0.00068897	0.2212	0.00011055	499.79096174757564	29.52	1.3112	29.52	29.073	30.384	0					53	32	4	0	0	0	0.6504	1	1839	1839		49.442	3.4896	1	1610000			67876	38196	47657	47733	73606	73606					0.06799680911660744
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.89520263671875	3	413.895022	1238.66324	0.38251	0.00015832	-0.22789	-9.4322E-05	0.15462	6.3996E-05	413.89498890421856	27.338	1.0906	27.338	26.908	27.999	0					97	28	4	0	0	0	0.811	1	1466	1466		59.931	16.28	1	8109900			67877	9458	47658	47734	73607	73607					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.89501953125	3	413.895022	1238.66324	0.014842	6.1432E-06	0.079074	3.2729E-05	0.093917	3.8872E-05	413.8951049864313	27.274	1.7459	27.261	26.869	28.615	-0.012983					133	44	4	0	0	0	0.78327	2	1451	1451;1460		61.765	20.684	1	6804800			67878	9458	47658	47734	73608;73609	73608					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.89544677734375	3	413.895022	1238.66324	-0.86713	-0.0003589	1.0799	0.00044697	0.21277	8.8064E-05	413.8954874317383	27.122	2.066	27.203	26.841	28.907	0.081293					132	52	4	0	0	0	0.99657	1	1394	1394		46.457	2.806	1	5719200			67879	9458	47658	47734	73610	73610					0.053452484715762694
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.7693176269531	2	460.769252	919.52395	0.36923	0.00017013	-0.4625	-0.00021311	-0.093275	-4.2978E-05	460.7689552744668	39.874	1.5905	39.874	39.495	41.085	0					111	44	4	0	0	0	0.11848	5	3470	3446;3470;3482;3494;3507		106.42	17.533	1	8169800			67880	4670	47659	47735	73611;73612;73613;73614;73615	73612					0.06096910854239468
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.7691955566406	2	460.769252	919.52395	-0.46668	-0.00021503	0.3444	0.00015869	-0.12229	-5.6345E-05	460.76933624917365	40.001	1.5261	39.889	39.5	41.027	-0.11223					108	41	4	0	0	0	0.074956	5	3469	3447;3459;3469;3481;3493		119.56	25.55	1	8993300			67881	4670	47659	47735	73616;73617;73618;73619;73620	73618					0.06096910854239468
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MSMS	OPSCC_39_ClassI_Rep-3	3	460.769287109375	2	460.769252	919.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.995	1	40.018	39.518	40.518	0.023006								0	0	0	0.092882	1	3427	3427		94.006	20.032	1				67882	4670	47659	47735	73621	73621					0.06096910854239468
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MSMS	OPSCC_39_ClassI_Rep-3	3	460.7697448730469	2	460.769252	919.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.06	1	40.083	39.583	40.583	0.023006								0	0	0	0.055901	1	3437	3437		106.42	12.409	1				67883	4670	47659	47735	73622	73622					0.06096910854239468
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MSMS	OPSCC_39_ClassI_Rep-3	3	460.769287109375	2	460.769252	919.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.134	1	40.157	39.657	40.657	0.023006								0	0	0	0.077235	1	3449	3449		97.473	12.113	1				67884	4670	47659	47735	73623	73623					0.06096910854239468
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MSMS	OPSCC_39_ClassI_Rep-3	3	460.769287109375	2	460.769252	919.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.207	1	40.23	39.73	40.73	0.023006								0	0	0	0.055901	1	3461	3461		106.42	35.12	1				67885	4670	47659	47735	73624	73624					0.06096910854239468
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MSMS	OPSCC_39_ClassI_Rep-3	3	460.7691345214844	2	460.769252	919.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.288	1	40.311	39.811	40.811	0.023006								0	0	0	0.13191	1	3474	3474		85.359	11.385	1				67886	4670	47659	47735	73625	73625					0.06096910854239468
RPANVERL	8	Unmodified	_RPANVERL_					0	0	0			REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.30419921875	2	477.777608	953.540663	2.7266	0.0013027	-2.7362	-0.0013073	-0.0095897	-4.5817E-06	477.7761773081733	18.699	0.34393	18.699	18.529	18.873	0					13	6	3	0	0	0	0.027866	1	320	320		73.975	16.163	1	99207	+		67887	24430	47660	47736	73626	73626					0.0620341174017085
RPANVERL	8	Unmodified	_RPANVERL_					0	0	0			REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.3046875	2	477.777608	953.540663	3.5028	0.0016735	-3.4884	-0.0016667	0.014344	6.8534E-06	477.77585008347006	18.858	0.44253	18.921	18.747	19.189	0.063307					15	8	3	0	0	0	0.027866	1	301	301		54.776	15.523	1	87074	+		67888	24430	47660	47736	73627	73627					0.0620341174017085
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.28173828125	2	453.281995	904.549437	0.76109	0.00034499	-1.1367	-0.00051525	-0.37562	-0.00017026	453.28141950307884	49.208	1.5814	49.208	48.83	50.411	0					93	44	4	0	0	0	0.29104	3	5095	5083;5095;5110		76.847	13.282	1	8025700			67889	6886	47661	47737	73628;73629;73630	73629					0.0933438537664415
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	453.2815856933594	2	453.281995	904.549437	0.038476	1.744E-05	-0.45653	-0.00020694	-0.41806	-0.0001895	453.28170664870373	49.423	1.3569	49.27	48.864	50.221	-0.15277					93	37	4	0	0	0	0.22754	4	5066	5066;5078;5089;5101		85.359	10.843	1	8035900			67890	6886	47661	47737	73631;73632;73633;73634	73631					0.0933438537664415
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.2818603515625	2	453.281995	904.549437	-1.1753	-0.00053275	0.94165	0.00042683	-0.23367	-0.00010592	453.28231701912966	49.159	1.4269	49.233	48.842	50.269	0.074196					102	39	4	0	0	0	0.29104	4	4996	4975;4996;5008;5022		76.847	18.46	1	7365600			67891	6886	47661	47737	73635;73636;73637;73638	73636					0.0933438537664415
RPAPAGRVTPP	11	Unmodified	_RPAPAGRVTPP_					0	0	0			REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8248291015625	2	559.825089	1117.63563	-1.1642	-0.00065177	0.51793	0.00028995	-0.6463	-0.00036182	559.8253325931292	30.756	1.4087	30.756	29.977	31.386	0					92	33	4	0	0	0	0.40147	2	1987	1987;2012		82.75	0.50997	1	2930400	+		67892	22609	47662	47738	73639;73640	73639					0.08151345211376793
RPAPAGRVTPP	11	Unmodified	_RPAPAGRVTPP_					0	0	0			REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.824951171875	2	559.825089	1117.63563	-0.76011	-0.00042553	0.071906	4.0255E-05	-0.68821	-0.00038527	559.8250988084533	30.491	1.1251	30.566	29.962	31.087	0.074314					82	26	5	0	0	0	0.1527	1	1921	1921		104.06	2.8042	1	3310800	+		67893	22609	47662	47738	73641	73641					0.08151345211376793
RPAPAGRVTPP	11	Unmodified	_RPAPAGRVTPP_					0	0	0			REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	559.825089	1117.63563	-1.1642	-0.00065177	0.51793	0.00028995	-0.6463	-0.00036182	559.8253325931292	30.756	1.4087	30.756	29.977	31.386	0	0.077045	0.00029167	NaN	104.06	92	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2930400	+		67894	22609	47662	47738							0.08151345211376793
RPAPAGRVTPP	11	Unmodified	_RPAPAGRVTPP_					0	0	0			REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	559.825089	1117.63563	-0.70247	-0.00039326	0.21449	0.00012008	-0.48797	-0.00027318	559.8251526876752	30.706	1.3364	30.715	30.042	31.378	0.0086689	0.03609	-4.8072E-05	NaN	104.06	92	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3013600	+		67895	22609	47662	47738							0.08151345211376793
RPAPALAPA	9	Unmodified	_RPAPALAPA_					0	0	0		ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.2591247558594	2	432.25852	862.502486	-0.11504	-4.9728E-05	0.39639	0.00017134	0.28135	0.00012162	432.2585622318503	35.721	1.2577	35.765	35.192	36.45	0.04406					71	33	4	0	0	0	0.78069	1	2702	2702		40.573	0	1	2392000			67896	8175	47663	47739	73642	73642					0.06573525825501747
RPAPAPMTR	9	Unmodified	_RPAPAPMTR_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71|RTEL1	REV__nc|ENSG00000258366|Q9NZ71|RTEL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7739562988281	2	498.774011	995.533469	-0.070506	-3.5167E-05	-0.25218	-0.00012578	-0.32268	-0.00016095	498.7737155268212	27.014	1.0739	27.014	26.615	27.689	0					64	27	4	0	0	0	0.54416	1	1442	1442		56.434	0.92959	1	2867900	+		67897	29096	47664	47740	73643	73643					0.03552355868100676
RPAPARPTM	9	Oxidation (M)	_RPAPARPTM(Oxidation (M))_		RPAPARPTM(1)		RPAPARPTM(59)	0	0	1		ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7713623046875	2	506.771468	1011.52838	-1.013	-0.00051337	0.74187	0.00037596	-0.27114	-0.0001374	506.771705977175	20.377	1.2108	20.377	19.689	20.9	0					58	24	3	0	0	0	0.50848	2	509	489;509		58.782	9.8458	1	483790			67898	2130	47665	47741	73644;73645	73645		77			0.023080520054918452
RPAPARPTM	9	Oxidation (M)	_RPAPARPTM(Oxidation (M))_		RPAPARPTM(1)		RPAPARPTM(41)	0	0	1		ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7716369628906	2	506.771468	1011.52838	-0.88531	-0.00044865	1.3889	0.00070384	0.50355	0.00025519	506.7722215522663	21.405	2.5306	21.405	20.753	23.283	0					110	53	3	0	0	0	0.77768	1	597	597		40.778	12.697	1	408390			67899	2130	47665	47741	73646	73646		77			0.023080520054918452
RPAPARPTM	9	Oxidation (M)	_RPAPARPTM(Oxidation (M))_		RPAPARPTM(1)		RPAPARPTM(48)	0	0	1		ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7716369628906	2	506.771468	1011.52838	-0.55085	-0.00027916	0.10763	5.4546E-05	-0.44322	-0.00022461	506.77141411605925	20.574	1.064	20.47	19.981	21.045	-0.10477					54	21	3	0	0	0	0.67687	1	525	525		47.657	8.8512	1	533810			67900	2130	47665	47741	73647	73647		77			0.023080520054918452
RPAPARPTM	9	Oxidation (M)	_RPAPARPTM(Oxidation (M))_		RPAPARPTM(1)		RPAPARPTM(49)	0	0	1		ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.771484375	2	506.771468	1011.52838	-0.48121	-0.00024386	1.4339	0.00072667	0.95271	0.00048281	506.77183885698105	21.581	2.4252	21.491	21.059	23.485	-0.090092					114	52	5	0	0	0	0.6504	1	713	713		49.442	15.269	1	385870			67901	2130	47665	47741	73648	73648		77			0.023080520054918452
RPAPARPTM	9	Unmodified	_RPAPARPTM_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.77392578125	2	498.774011	995.533469	-0.070506	-3.5167E-05	-0.25218	-0.00012578	-0.32268	-0.00016095	498.7737155268212	27.014	1.0739	27.014	26.615	27.689	0					64	27	4	0	0	0	0.53979	1	1428	1428		56.721	10.749	1	2867900			67902	2130	47665	47742	73649	73649					0.03552355868100676
RPAPARPTM	9	Unmodified	_RPAPARPTM_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.77386474609375	2	498.774011	995.533469	-0.4558	-0.00022734	-0.20079	-0.00010015	-0.65659	-0.00032749	498.77381381258635	26.986	1.0044	26.973	26.496	27.5	-0.012983					60	25	3	0	0	0	0.67687	1	1427	1427		47.657	5.2612	1	3372400			67903	2130	47665	47742	73650	73650					0.03552355868100676
RPAPARPTM	9	Unmodified	_RPAPARPTM_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	498.774011	995.533469	-0.75929	-0.00037871	0.38952	0.00019428	-0.36977	-0.00018443	498.77404374797106	26.822	0.92033	26.903	26.543	27.463	0.081291	-0.060371	0.00046688	NaN	56.721	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2853400			67904	2130	47665	47742							0.03552355868100676
RPAPARRPRG	10	Unmodified	_RPAPARRPRG_					0	0	0		ENST00000368679.8_1_10:128019050-128076835:-|nuORF	ENST00000368679.8_1_10:128019050-128076835:-|nuORF	ENST00000368679.8_1_10:128019050-128076835:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3429565429688	2	567.341772	1132.66899	0.74134	0.00042059	1.4082	0.00079895	2.1496	0.0012195	567.342480522218	19.956	0.58431	19.732	19.483	20.067	-0.22344					30	11	4	0	0	0	1.1267	1	457	457		29.15	1.0681	1	227810			67905	12902	47666	47743	73651	73651					0.10796391773919822
RPAPAWWL	8	Unmodified	_RPAPAWWL_					0	0	0			REV__ENST00000429642.1_3_10:1094508-1094661:-|nuORF	REV__ENST00000429642.1_3_10:1094508-1094661:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.77398681640625	2	498.774337	995.534121	-0.4558	-0.00022734	-0.85432	-0.00042611	-1.3101	-0.00065345	498.77381381258635	26.986	1.0044	26.973	26.496	27.5	-0.012983					60	25	3	0	0	0	0.71717	2	1412	1403;1412		65.897	11.121	1	3372400	+		67906	32340	47667	47744	73652;73653	73653					0.03617518579460466
RPAPAWWL	8	Unmodified	_RPAPAWWL_					0	0	0			REV__ENST00000429642.1_3_10:1094508-1094661:-|nuORF	REV__ENST00000429642.1_3_10:1094508-1094661:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7740173339844	2	498.774337	995.534121	-0.75929	-0.00037871	-0.26401	-0.00013168	-1.0233	-0.00051039	498.77404374797106	26.822	0.92033	26.903	26.543	27.463	0.081291					61	23	4	0	0	0	0.94001	1	1343	1343		46.766	4.3703	1	2853400	+		67907	32340	47667	47744	73654	73654					0.03617518579460466
RPAPCSKSCL	10	Carbamidomethyl (C)	_RPAPC(Carbamidomethyl (C))SKSCL_	RPAPC(0.5)SKSC(0.5)L		RPAPC(0)SKSC(0)L		0	1	0			REV__ENST00000583826.5_1_17:56414633-56414977:+|nuORF	REV__ENST00000583826.5_1_17:56414633-56414977:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.8250732421875	2	559.775893	1117.53723	-0.71803	-0.00040193	2.9648	0.0016596	2.2468	0.0012577	559.7778862879887	30.616	0.45457	30.625	30.373	30.828	0.0086708					20	10	3	0	0	0	0.03519	1	1965	1965		98.629	18.917	2	129560	+		67908	35556	47668	47745	73655	73655	460;461				-0.016833424203468894
RPAPGRPGL	9	Unmodified	_RPAPGRPGL_					0	0	0			REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.7740173339844	2	460.774868	919.535184	0.46258	0.00021315	-0.53938	-0.00024853	-0.076793	-3.5384E-05	460.7745258404312	23.991	0.76501	24.068	23.734	24.499	0.076241					46	16	4	0	0	0	0.55828	2	967	942;967		55.504	3.205	1	1739800	+		67909	32367	47669	47746	73656;73657	73657					0.0721973294835152
RPAPGRPGL	9	Unmodified	_RPAPGRPGL_					0	0	0			REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	460.774868	919.535184	0.46258	0.00021315	-0.53938	-0.00024853	-0.076793	-3.5384E-05	460.7745258404312	23.991	0.76501	24.068	23.734	24.499	0.076241	0.018781	-0.00059489	NaN	55.504	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1739800	+		67910	32367	47669	47746							0.0721973294835152
RPAPKAGVEMM	11	Unmodified	_RPAPKAGVEMM_					0	0	0			REV__nc|ENSG00000023330|P13196-2|ALAS1	REV__nc|ENSG00000023330|P13196-2|ALAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	593.8090209960938	2	593.807193	1185.59983	-1.1813	-0.00070148	4.0608	0.0024113	2.8795	0.0017099	593.8096367420404	22.813	2.4224	22.737	22.082	24.505	-0.075296					155	54	4	0	0	0	0.6558	1	854	854		66.429	7.6473	1	2203900	+		67911	20010	47670	47747	73658	73658					0.014458036478345093
RPAPLSAEL	9	Unmodified	_RPAPLSAEL_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2745056152344	2	477.274367	952.53418	0.27025	0.00012898	2.1277	0.0010155	2.3979	0.0011445	477.2738630118922	48.125	1.0876	48.125	47.811	48.899	0					90	31	4	0	0	0	0.28753	2	4883	4883;4894		77.318	0	1	5156500			67912	7693	47671	47748	73659;73660	73659					0.056014737887949195
RPAPLSAEL	9	Unmodified	_RPAPLSAEL_					0	0	0		ENSG00000167508|ENST00000301012|MVD;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF	ENSG00000167508|ENST00000301012|MVD	ENSG00000167508|ENST00000301012|MVD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2742004394531	2	477.274367	952.53418	-0.3601	-0.00017187	2.8317	0.0013515	2.4716	0.0011797	477.27414422630454	48.004	1.2022	48.07	47.777	48.979	0.066795					86	33	4	0	0	0	0.26966	2	4806	4806;4819		79.713	0	1	4832300			67913	7693	47671	47748	73661;73662	73661					0.056014737887949195
RPAPNCRSVF	10	Carbamidomethyl (C)	_RPAPNC(Carbamidomethyl (C))RSVF_	RPAPNC(1)RSVF		RPAPNC(67)RSVF		0	1	0		ENST00000252840.10_1_19:7070637-7075726:+|nuORF	ENST00000252840.10_1_19:7070637-7075726:+|nuORF	ENST00000252840.10_1_19:7070637-7075726:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	602.302978515625	2	602.306207	1202.59786	-2.2044	-0.0013277	-3.1964	-0.0019252	-5.4008	-0.0032529	602.3043386089198	30.941	1.4823	30.941	30.467	31.949	0					97	35	5	0	0	0	0.69662	2	2046	2010;2046		67.494	12.717	1	5432300			67914	11363	47672	47749	73663;73664	73664	157				0.004665109542429491
RPAPNCRSVF	10	Carbamidomethyl (C)	_RPAPNC(Carbamidomethyl (C))RSVF_	RPAPNC(1)RSVF		RPAPNC(80)RSVF		0	1	0		ENST00000252840.10_1_19:7070637-7075726:+|nuORF	ENST00000252840.10_1_19:7070637-7075726:+|nuORF	ENST00000252840.10_1_19:7070637-7075726:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	602.3031616210938	2	602.306207	1202.59786	-1.8494	-0.0011139	-3.5822	-0.0021576	-5.4316	-0.0032715	602.3041148385652	30.592	1.3575	30.666	30.254	31.612	0.074314					93	32	5	0	0	0	0.57594	2	1930	1919;1930		79.713	34.681	1	6018700			67915	11363	47672	47749	73665;73666	73666	157				0.004665109542429491
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2	nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-5|EPN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.7671203613281	2	468.766709	935.518865	-0.51497	-0.0002414	0.46274	0.00021692	-0.052231	-2.4484E-05	468.76688039624685	35.279	1.1961	35.279	34.867	36.063	0					93	31	4	0	0	0	0.091713	5	2683	2683;2694;2706;2719;2732		113.41	29.918	1	7310000			67916	1468	47673	47750	73667;73668;73669;73670;73671	73667					0.048526069916078995
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2	nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-5|EPN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.7669982910156	2	468.766709	935.518865	-0.68629	-0.00032171	0.7142	0.00033479	0.027908	1.3082E-05	468.7669807565479	35.088	1.0708	35.066	34.712	35.783	-0.021763					82	27	4	0	0	0	0.043667	4	2679	2643;2654;2666;2679		131.03	42.8	1	7450100			67917	1468	47673	47750	73672;73673;73674;73675	73675					0.048526069916078995
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2	nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-5|EPN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.76666259765625	2	468.766709	935.518865	0.18495	8.67E-05	-0.3378	-0.00015835	-0.15284	-7.1647E-05	468.7665072937547	35.141	1.3066	35.185	34.832	36.139	0.044056					101	34	4	0	0	0	0.10174	5	2617	2606;2617;2628;2639;2651		110.12	38.242	1	7151200			67918	1468	47673	47750	73676;73677;73678;73679;73680	73677					0.048526069916078995
RPAPPLVMVI	10	Unmodified	_RPAPPLVMVI_					0	0	0		ENST00000320583.9_3_7:99156274-99158253:+|nuORF	ENST00000320583.9_3_7:99156274-99158253:+|nuORF	ENST00000320583.9_3_7:99156274-99158253:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.780029296875	2	546.833537	1091.65252	-0.89395	-0.00048884	3.9363	0.0021525	3.0423	0.0016637	546.8356047647491	31.144	1.1125	31.156	30.831	31.943	0.011799					62	26	3	0	0	0	0.03519	1	2044	2044		47.916	0	1	575450			67919	12195	47674	47751	73681	73681					0.11036129772946879
RPAPRRSH	8	Unmodified	_RPAPRRSH_					0	0	0			REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF	REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2300720214844	2	488.781016	975.54748	-0.3154	-0.00015416	2.7316	0.0013352	2.4163	0.001181	488.7821166026623	31.564	0.80499	31.575	31.299	32.104	0.011797					34	19	4	0	0	0	0.027866	1	2078	2078		33.516	6.8227	1	144670	+		67920	30651	47675	47752	73682	73682					0.058727694114168116
RPAPTIVLS	9	Unmodified	_RPAPTIVLS_					0	0	0			REV__ENST00000546712.1_1_12:56396298-56396460:+|nuORF	REV__ENST00000546712.1_1_12:56396298-56396460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2847900390625	2	477.292559	952.570566	-0.723	-0.00034508	1.0934	0.00052188	0.37042	0.0001768	477.29294766311125	55.607	0.51797	55.705	55.447	55.965	0.098015					24	13	3	0	0	0	0.024541	1	6050	6050		11.511	0	1	478310	+		67921	34850	47676	47753	73683	73683					0.09238350685518526
RPAPVLHL	8	Unmodified	_RPAPVLHL_					0	0	0		ENST00000562370.5_1_16:583983-597374:+|nuORF;ENST00000219611.6_1_16:586082-597374:+|nuORF	ENST00000562370.5_1_16:583983-597374:+|nuORF	ENST00000562370.5_1_16:583983-597374:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.77734375	2	451.782162	901.549771	0.47622	0.00021515	-0.24727	-0.00011171	0.22895	0.00010344	451.78179111654697	41.216	0.98467	41.216	40.871	41.856	0					48	27	4	0	0	0	0.027866	1	3675	3675		44.531	0	1	1249600			67922	11173	47677	47754	73684	73684					0.09505805096512177
RPAPVLHL	8	Unmodified	_RPAPVLHL_					0	0	0		ENST00000562370.5_1_16:583983-597374:+|nuORF;ENST00000219611.6_1_16:586082-597374:+|nuORF	ENST00000562370.5_1_16:583983-597374:+|nuORF	ENST00000562370.5_1_16:583983-597374:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.77764892578125	2	451.782162	901.549771	0.30554	0.00013804	-0.34792	-0.00015718	-0.042378	-1.9145E-05	451.78189351595694	41.348	0.89224	41.225	40.906	41.798	-0.12317					42	24	2	0	0	0	0.027866	1	3692	3692		44.531	3.9584	1	1377000			67923	11173	47677	47754	73685	73685					0.09505805096512177
RPAPVLHL	8	Unmodified	_RPAPVLHL_					0	0	0		ENST00000562370.5_1_16:583983-597374:+|nuORF;ENST00000219611.6_1_16:586082-597374:+|nuORF	ENST00000562370.5_1_16:583983-597374:+|nuORF	ENST00000562370.5_1_16:583983-597374:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.777587890625	2	451.782162	901.549771	0.16496	7.4525E-05	-0.21614	-9.7647E-05	-0.05118	-2.3122E-05	451.7819202975342	41.328	0.77792	41.351	41.04	41.818	0.023006					39	21	2	0	0	0	0.027866	1	3653	3653		35.201	15.841	1	1352700			67924	11173	47677	47754	73686	73686					0.09505805096512177
RPAPVVSKPSR	11	Unmodified	_RPAPVVSKPSR_					0	0	0			REV__ENST00000487620.1_1_7:99673178-99679302:-|nuORF	REV__ENST00000487620.1_1_7:99673178-99679302:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.3629760742188	2	597.359296	1192.70404	0.26733	0.00015969	-1.1499	-0.00068693	-0.88261	-0.00052723	597.3584820835335	98.719	1.4456	98.583	98.147	99.592	-0.13625					99	34	4	0	0	0	1.0557	1	12326	12326		23.523	0.48021	1	2905600	+		67925	33613	47678	47755	73687	73687					0.11539589791209437
RPAPWGPAP	9	Unmodified	_RPAPWGPAP_					0	0	0		nc|ENSG00000171102|Q9NPH6-3|OBP2B;nc|ENSG00000171102|Q9NPH6-2|OBP2B	nc|ENSG00000171102|Q9NPH6-3|OBP2B	nc|ENSG00000171102|Q9NPH6-3|OBP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7722473144531	2	474.756144	947.497735	-0.3467	-0.0001646	-1.9571	-0.00092913	-2.3038	-0.0010937	474.7551231199095	22.984	0.31616	23.058	22.837	23.154	0.073954					10	6	2	0	0	0	0.024357	1	808	808		44.531	0	1	69216			67926	18510	47679	47756	73688	73688					0.02188641682744219
RPAQGYTK	8	Unmodified	_RPAQGYTK_					0	0	0			REV__LYST|p.T3410A|1|0.21|ENSG00000143669|chr1:235702893-235702893|T/C|missense_variant	REV__LYST|p.T3410A|1|0.21|ENSG00000143669|chr1:235702893-235702893|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.77435302734375	2	460.751059	919.487565	0.49175	0.00022657	0.5825	0.00026839	1.0743	0.00049496	460.7512363871334	24.004	1.033	24.081	23.605	24.638	0.076828					38	22	3	0	0	0	0.027866	1	953	953		35.618	0	1	153550	+		67927	36343	47680	47757	73689	73689					0.0246003395752723
RPAQKISI	8	Unmodified	_RPAQKISI_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.766845703125	2	456.784902	911.55525	-0.21672	-9.8994E-05	-3.4311	-0.0015673	-3.6478	-0.0016663	456.78385262844654	23.203	0.366	23.28	23.195	23.561	0.076241					11	8	2	0	0	0	0.027866	1	851	851		37.159	1.5408	1	83429	+		67928	21546	47681	47758	73690	73690					0.09593483888329501
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7960815429688	2	519.795801	1037.57705	-0.9407	-0.00048897	0.64154	0.00033347	-0.29915	-0.0001555	519.7960813519863	48.466	0.7595	48.466	48.174	48.934	0					40	21	2	0	0	0	0.22754	2	4942	4942;4954		85.359	53.405	1	4128700			67929	4481	47682	47759	73691;73692	73691					0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7955322265625	2	519.795801	1037.57705	-0.61459	-0.00031946	0.35778	0.00018597	-0.25682	-0.00013349	519.7959343854974	48.639	0.88189	48.486	48.159	49.041	-0.15277					44	24	2	0	0	0	0.11848	2	4948	4948;4961		106.42	60.463	1	4151900			67930	4481	47682	47759	73693;73694	73693					0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7959594726562	2	519.795801	1037.57705	-0.59754	-0.0003106	0.091083	4.7344E-05	-0.50646	-0.00026326	519.7958127365835	48.369	0.97279	48.436	48.079	49.052	0.066795					49	26	2	0	0	0	0.11848	2	4856	4856;4874		106.42	63.941	1	4393800			67931	4481	47682	47759	73695;73696	73695					0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.795801	1037.57705	-0.86374	-0.00044897	1.0903	0.00056672	0.22654	0.00011775	519.7963004734358	48.323	0.21452	48.226	48.076	48.291	-0.097549	-0.16964	0.00072745	NaN	106.42	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128060			67932	4481	47682	47759							0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.795801	1037.57705	-0.89357	-0.00046448	0.38293	0.00019904	-0.51065	-0.00026543	520.297527232639	48.638	0.35418	48.362	48.151	48.505	-0.27598	-0.032724	-7.8981E-06	NaN	106.42	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87770			67933	4481	47682	47759							0.05976288636884419
RPAQVDVEVS	10	Unmodified	_RPAQVDVEVS_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2939453125	2	550.290745	1098.56694	1.4218	0.00078238	3.9349	0.0021653	5.3567	0.0029477	550.291957084967	16.834	0.42225	16.68	16.485	16.907	-0.15376					12	8	2	0	0	0	1.1088	1	116	116		31.53	1.0262	1	43811	+		67934	27773	47683	47760	73697	73697					0.02159636120995856
RPAQVSQPF	9	Unmodified	_RPAQVSQPF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;ENST00000498596.5_1_1:171556213-171560772:+|nuORF	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2774658203125	2	515.277441	1028.54033	-0.10529	-5.4253E-05	0.22733	0.00011714	0.12204	6.2885E-05	515.2774297053845	40.471	0.8441	40.471	40.137	40.981	0					66	23	4	0	0	0	0.34489	1	3575	3575		69.628	0.8408	1	3715100			67935	3636	47684	47761	73698	73698					0.027199920203202055
RPAQVSQPF	9	Unmodified	_RPAQVSQPF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;ENST00000498596.5_1_1:171556213-171560772:+|nuORF	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.278076171875	2	515.277441	1028.54033	0.66639	0.00034338	-0.61665	-0.00031775	0.04974	2.563E-05	515.2770097555966	40.587	0.88913	40.473	40.171	41.06	-0.11397					77	24	4	0	0	0	0.247	2	3569	3569;3579		82.75	29.814	1	3345400			67936	3636	47684	47761	73699;73700	73699					0.027199920203202055
RPARAPPSP	9	Unmodified	_RPARAPPSP_					0	0	0			REV__ENST00000528852.5_1_11:66045701-66045848:+|nuORF	REV__ENST00000528852.5_1_11:66045701-66045848:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7779235839844	2	474.772326	947.530098	0.39234	0.00018627	0.33596	0.0001595	0.7283	0.00034578	474.77230453201145	24.058	0.73886	24.058	23.78	24.518	0					31	16	3	0	0	0	0.024405	1	1050	1050		44.117	12.162	1	690080	+		67937	34504	47685	47762	73701	73701					0.05423429085749376
RPARGARCTV	10	Unmodified	_RPARGARCTV_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.802001953125	2	543.801091	1085.58763	-0.84096	-0.00045731	2.8304	0.0015392	1.9895	0.0010819	543.8024217066045	56.828	1.1808	56.828	56.351	57.532	0					87	32	4	0	0	0	0.91678	1	6341	6341		52.937	6.9645	1	10205000			67938	6747	47686	47763	73702	73702					0.0482594801965206
RPARGPRGAHA	11	Unmodified	_RPARGPRGAHA_					0	0	0		ENST00000540753.5_1_9:125133477-125134045:+|nuORF	ENST00000540753.5_1_9:125133477-125134045:+|nuORF	ENST00000540753.5_1_9:125133477-125134045:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.3237915039062	2	573.32358	1144.63261	0.13955	8.0007E-05	0.58627	0.00033612	0.72582	0.00041613	573.3238622701145	107.09	0.58153	107.09	106.86	107.44	-0.003479					29	18	2	0	0	0	1.0238	1	13730	13730		31.53	4.8369	1	191700			67939	16431	47687	47764	73703	73703					0.06607514877237008
RPARGRVR	8	Unmodified	_RPARGRVR_					0	0	0			REV__ENST00000297109.10_1_5:153825644-153830670:+|nuORF	REV__ENST00000297109.10_1_5:153825644-153830670:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.77960205078125	2	484.304659	966.594764	-1.2587	-0.00060959	3.1846	0.0015423	1.9259	0.00093272	484.3059255286703	29.289	0.33528	29.289	29.112	29.447	0					12	8	2	0	0	0	0.027866	1	1776	1776		40.573	7.057	1	122970	+		67940	30009	47688	47765	73704	73704					0.11013048682411863
RPARKGPVK	9	Unmodified	_RPARKGPVK_					0	0	0			REV__ENST00000396191.5_1_7:32109982-32110375:-|nuORF	REV__ENST00000396191.5_1_7:32109982-32110375:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.82470703125	2	504.824892	1007.63523	1.2607	0.00063643	-1.5865	-0.00080091	-0.32581	-0.00016448	504.8240493041915	17.586	0.44806	17.432	17.209	17.658	-0.15403					24	8	4	0	0	0	0.70186	1	209	209		45.952	3.5558	1	1021500	+		67941	31725	47689	47766	73705	73705					0.13171970282178336
RPARLQQQ	8	Unmodified	_RPARLQQQ_					0	0	0		nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B;nc|ENSG00000155846|Q86YN6-6|PPARGC1B;nc|ENSG00000155846|Q86YN6-5|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7740173339844	2	498.788507	995.562461	-0.72845	-0.00036334	-3.8067	-0.0018987	-4.5351	-0.0022621	498.786420613673	26.821	0.24558	26.903	26.714	26.96	0.081293					6	5	2	0	0	0	0.027866	1	1343	1343		50.025	14.824	1	24865			67942	6490	47690	47767	73706	73706					0.06450216488758542
RPARPQPH	8	Unmodified	_RPARPQPH_					0	0	0		ENST00000312438.7_1_11:67134982-67141182:-|nuORF	ENST00000312438.7_1_11:67134982-67141182:-|nuORF	ENST00000312438.7_1_11:67134982-67141182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7703552246094	2	479.770117	957.525681	2.8311	0.0013583	-2.8918	-0.0013874	-0.060633	-2.909E-05	479.7685514177219	19.267	0.88711	19.333	18.75	19.637	0.066195					34	17	3	0	0	0	0.97924	1	359	359		40.573	1.7665	1	119680			67943	12089	47691	47768	73707	73707					0.045219646628424925
RPARQFQKW	9	Unmodified	_RPARQFQKW_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.8380126953125	2	608.838531	1215.66251	-0.99218	-0.00060407	-1.5136	-0.00092154	-2.5058	-0.0015256	608.8374589612363	109.83	0.74304	109.7	109.51	110.25	-0.12524					78	33	4	0	0	0	0.98697	1	13522	13522		23.042	0	1	5435400	+		67944	27795	47692	47769	73708	73708					0.06330453822556592
RPARQNLRDL	10	Unmodified	_RPARQNLRDL_					0	0	0		ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.21453857421875	3	413.57406	1237.70035	-0.43732	-0.00018087	0.92799	0.00038379	0.49067	0.00020293	413.9089171368742	23.962	0.52174	23.914	23.699	24.22	-0.047146					17	11	2	0	0	0	0.03519	1	1028	1028		14.694	0	1	58917			67945	10099	47693	47770	73709	73709					0.09100920017363023
RPASCLWLVPS	11	Unmodified	_RPASCLWLVPS_					0	0	0			REV__ENST00000380122.9_2_X:16861892-16862162:+|nuORF	REV__ENST00000380122.9_2_X:16861892-16862162:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.509765625	3	410.221748	1227.64341	0.050116	2.0559E-05	3.293	0.0013509	3.3432	0.0013714	410.2230348860928	28.502	0.77378	28.502	27.963	28.736	0					35	18	3	0	0	0	0.024755	1	1645	1645		52.167	12.294	1	186350	+		67946	31465	47694	47771	73710	73710					0.038697364166182524
RPASIVQGS	9	Unmodified	_RPASIVQGS_					0	0	0			REV__ENSG00000089558|ENST00000264661|KCNH4	REV__ENSG00000089558|ENST00000264661|KCNH4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.2541809082031	2	457.756341	913.498129	-0.73216	-0.00033515	-1.1413	-0.00052245	-1.8735	-0.0008576	457.75630284194165	20.632	2.1306	20.632	19.689	21.819	0					121	43	5	0	0	0	0.82115	1	624	624		37.812	0	1	8141900	+		67947	20855	47695	47772	73711	73711					0.03792016611953386
RPASLLLLL	9	Unmodified	_RPASLLLLL_					0	0	0		nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000112763|Q7KYR7-6|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3343811035156	2	498.334227	994.653902	2.1217	0.0010573	-2.3014	-0.0011469	-0.17974	-8.9568E-05	498.3330237962994	74.302	0.59526	74.302	73.955	74.551	0					47	13	4	0	0	0	0.62163	1	9083	9083		51.335	1.3109	1	5410200			67948	3237;14796	47696	47773	73712	73712					0.15636087133384535
RPASPKGCARS	11	Carbamidomethyl (C)	_RPASPKGC(Carbamidomethyl (C))ARS_	RPASPKGC(1)ARS		RPASPKGC(62)ARS		0	1	0		ENST00000591160.1_1_19:5902597-5903854:-|nuORF	ENST00000591160.1_1_19:5902597-5903854:-|nuORF	ENST00000591160.1_1_19:5902597-5903854:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.8090209960938	2	593.809113	1185.60367	-0.72804	-0.00043232	0.377	0.00022387	-0.35104	-0.00020845	593.8093228779526	22.771	3.0568	22.845	22.03	25.087	0.073954					178	67	3	0	0	0	0.73399	1	779	779		61.691	12.25	1	2073100			67949	17346	47697	47774	73713	73713	228				0.01829609465903559
RPASPMQP	8	Unmodified	_RPASPMQP_					0	0	0			REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2593688964844	2	442.226362	882.438172	-0.20144	-8.9081E-05	3.7977	0.0016794	3.5962	0.0015904	442.2276585742808	27.352	0.57845	27.339	27.067	27.645	-0.012983					33	15	3	0	0	0	0.027866	1	1490	1490		56.721	0	1	174720	+		67950	20549	47698	47775	73714	73714					-0.007749973229351781
RPASPPRPA	9	Unmodified	_RPASPPRPA_					0	0	0		ENST00000257897.7_2_12:58120030-58120555:-|nuORF	ENST00000257897.7_2_12:58120030-58120555:-|nuORF	ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.7724609375	2	474.772326	947.530098	-0.28282	-0.00013428	0.088993	4.2251E-05	-0.19383	-9.2025E-05	474.7724586573676	23.137	1.9821	23.214	21.884	23.866	0.076241					106	43	4	0	0	0	0.51687	1	798	798		58.23	5.2932	1	2962800			67951	11411	47699	47776	73715	73715					0.05423429085749376
RPASQSPEH	9	Unmodified	_RPASQSPEH_					0	0	0			REV__ENST00000379047.7_1_16:69752422-69760479:-|nuORF	REV__ENST00000379047.7_1_16:69752422-69760479:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7881774902344	2	504.746505	1007.47846	-0.45888	-0.00023162	2.6717	0.0013485	2.2128	0.0011169	504.74857049018965	20.033	1.2418	19.928	19.557	20.799	-0.10477					45	25	3	0	0	0	0.024397	1	550	550		56.721	6.6965	1	33070	+		67952	31423	47700	47777	73716	73716					-0.024983593988054054
RPASRALLSS	10	Unmodified	_RPASRALLSS_					0	0	0			REV__ENST00000504519.5_1_4:169552810-169602515:+|nuORF	REV__ENST00000504519.5_1_4:169552810-169602515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.310302734375	2	529.309272	1056.60399	-0.29132	-0.0001542	0.39278	0.0002079	0.10146	5.3704E-05	529.3095205123531	29.03	0.78307	29.109	28.824	29.607	0.078344					43	19	4	0	0	0	0.94316	1	1694	1694		51.193	7.0759	1	2626500	+		67953	33984	47701	47778	73717	73717					0.07795352457424087
RPASRALLSS	10	Unmodified	_RPASRALLSS_					0	0	0			REV__ENST00000504519.5_1_4:169552810-169602515:+|nuORF	REV__ENST00000504519.5_1_4:169552810-169602515:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	529.309272	1056.60399	-0.86654	-0.00045867	2.0871	0.0011047	1.2206	0.00064606	529.3103934921096	29.251	0.77779	29.254	29.014	29.792	0.0031357	0.041506	0.0006729	NaN	51.193	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2762800	+		67954	33984	47701	47778							0.07795352457424087
RPASRLPS	8	Unmodified	_RPASRLPS_					0	0	0			REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2591552734375	2	442.259051	882.503549	-0.32954	-0.00014574	-1.6067	-0.00071059	-1.9363	-0.00085633	442.25921411796867	27.412	2.4538	27.412	26.324	28.778	0					149	61	3	0	0	0	0.56311	11	1447	1425;1436;1447;1458;1481;1493;1505;1518;1530;1544;1557		79.713	18.536	1	58226000	+		67955	29571	47702	47779	73718;73719;73720;73721;73722;73723;73724;73725;73726;73727;73728	73720					0.05759740194423557
RPASRLPS	8	Unmodified	_RPASRLPS_					0	0	0			REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2593688964844	2	442.259051	882.503549	-0.20298	-8.9768E-05	-1.7594	-0.00077809	-1.9623	-0.00086786	442.2591749967246	27.347	2.6241	27.334	26.374	28.998	-0.012983					207	65	5	0	0	0	0.38989	11	1490	1408;1419;1431;1443;1454;1466;1478;1490;1503;1515;1528		98.629	10.933	1	54895000	+		67956	29571	47702	47779	73729;73730;73731;73732;73733;73734;73735;73736;73737;73738;73739	73736					0.05759740194423557
RPASRLPS	8	Unmodified	_RPASRLPS_					0	0	0			REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2591857910156	2	442.259051	882.503549	-0.82894	-0.00036661	-0.1938	-8.5709E-05	-1.0227	-0.00045232	442.2594095875146	27.156	2.3252	27.237	26.249	28.575	0.081293					186	58	5	0	0	0	0.44952	9	1396	1344;1355;1367;1396;1408;1420;1433;1444;1457		90.37	18.526	1	65640000	+		67957	29571	47702	47779	73740;73741;73742;73743;73744;73745;73746;73747;73748	73743					0.05759740194423557
RPASRLPS	8	Unmodified	_RPASRLPS_					0	0	0			REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	442.259051	882.503549	-0.20298	-8.9768E-05	-1.7594	-0.00077809	-1.9623	-0.00086786	442.2591749967246	27.347	2.6241	27.334	26.374	28.998	-0.012983	0.0066866	-0.00074088	NaN	98.629	207	65	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54895000	+		67958	29571	47702	47779							0.05759740194423557
RPASSRLP	8	Unmodified	_RPASSRLP_					0	0	0		ENST00000563829.5_1_15:75145788-75146232:-|nuORF	ENST00000563829.5_1_15:75145788-75146232:-|nuORF	ENST00000563829.5_1_15:75145788-75146232:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2591552734375	2	442.259051	882.503549	-0.13629	-6.0275E-05	0.30818	0.0001363	0.17189	7.6021E-05	442.25902065714075	23.462	1.1735	23.539	23.234	24.408	0.076241					65	26	3	0	0	0	1.0198	1	900	900		34.173	2.2177	1	1206400			67959	16876	47703	47780	73749	73749					0.05759740194423557
RPASSRSAL	9	Unmodified	_RPASSRSAL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7669677734375	2	472.76724	943.519927	-0.3201	-0.00015133	-0.21413	-0.00010123	-0.53422	-0.00025256	472.7670263277153	20.351	1.1157	20.351	19.735	20.85	0					54	22	4	0	0	0	0.6238	1	537	537		51.193	7.0759	1	441300			67960	1272	47704	47781	73750	73750					0.045908213605116543
RPATILSLK	9	Unmodified	_RPATILSLK_					0	0	0			REV__ENSG00000099812|ENST00000215582|MISP	REV__ENSG00000099812|ENST00000215582|MISP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.79632568359375	2	499.821484	997.628415	0.02929	1.464E-05	1.5516	0.00077551	1.5809	0.00079015	499.8220804660233	66.609	0.25272	66.609	66.461	66.714	0					11	6	2	0	0	0	0.024541	1	7924	7924		7.6903	0.49693	1	904930	+		67961	21010	47705	47782	73751	73751					0.1295061261093906
RPATRALL	8	Unmodified	_RPATRALL_					0	0	0			REV__ENSG00000105122|ENST00000343625|RASAL3	REV__ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.2850036621094	2	449.285069	896.555585	-0.33381	-0.00014998	0.20153	9.0543E-05	-0.13229	-5.9434E-05	449.28504697638544	34.952	1.1256	34.952	34.444	35.57	0					75	29	4	0	0	0	0.68535	1	2652	2652		68.485	0	1	3082300	+		67962	21493	47706	47783	73752	73752					0.10316903608168104
RPAVACHA	8	Unmodified	_RPAVACHA_					0	0	0		chr12:77028138-77029831|483|17.83|0.78|4.51|-|2|E2F7,E2F7|1	chr12:77028138-77029831|483|17.83|0.78|4.51|-|2|E2F7,E2F7|1	chr12:77028138-77029831|483|17.83|0.78|4.51|-|2|E2F7,E2F7|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.7131042480469	2	412.713422	823.412291	-0.34626	-0.00014291	0.025176	1.0391E-05	-0.32109	-0.00013252	412.7132426560172	73.344	1.8082	73.079	71.799	73.607	-0.26479					63	43	2	0	0	0	1.0574	1	8624	8624		21.702	1.2205	1	1638600			67963	329	47707	47784	73753	73753					-0.006478467745751004
RPAVGHSGL	9	Unmodified	_RPAVGHSGL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.25140380859375	2	447.251226	892.487899	-0.60859	-0.00027219	0.63921	0.00028589	0.03062	1.3695E-05	447.2514221750719	25.264	1.038	25.264	24.919	25.957	0					59	24	4	0	0	0	0.14024	3	1183	1171;1183;1195		101.6	23.459	1	3738700			67964	923	47708	47785	73754;73755;73756	73755					0.03735453677370515
RPAVGHSGL	9	Unmodified	_RPAVGHSGL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.2513122558594	2	447.251226	892.487899	-0.70595	-0.00031574	0.75133	0.00033603	0.045381	2.0297E-05	447.2514769476872	25.29	1.1241	25.256	24.948	26.072	-0.034397					62	26	4	0	0	0	0.14024	3	1168	1168;1180;1192		101.6	22.15	1	3797200			67965	923	47708	47785	73757;73758;73759	73757					0.03735453677370515
RPAVGHSGL	9	Unmodified	_RPAVGHSGL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	447.2513427734375	2	447.251226	892.487899	0.24368	0.00010899	-0.30128	-0.00013475	-0.057597	-2.576E-05	447.25106433833025	25.154	1.0066	25.235	24.916	25.922	0.08009					69	23	5	0	0	0	0.091713	3	1126	1105;1116;1126		113.41	24.409	1	3966200			67966	923	47708	47785	73760;73761;73762	73762					0.03735453677370515
RPAVGRAQL	9	Unmodified	_RPAVGRAQL_					0	0	0		ENST00000564987.1_1_16:23535694-23546228:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2	ENST00000564987.1_1_16:23535694-23546228:-|nuORF	ENST00000564987.1_1_16:23535694-23546228:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.77960205078125	2	484.293425	966.572297	-1.2612	-0.00061079	1.3967	0.00067643	0.13554	6.564E-05	484.29383572313293	29.29	0.8627	29.29	29.032	29.895	0					33	21	2	0	0	0	0.024381	1	1776	1776		45.952	10.334	1	628010			67967	2497	47709	47786	73763	73763					0.08767404494130915
RPAVLTGVAE	10	Unmodified	_RPAVLTGVAE_					0	0	0		ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	ENSG00000137145|ENST00000434457|DENND4C	ENSG00000137145|ENST00000434457|DENND4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.77154541015625	2	506.792924	1011.57129	-1.1646	-0.00059022	0.087597	4.4394E-05	-1.077	-0.00054583	506.7928433256475	20.333	0.52883	20.333	20.127	20.656	0					17	10	2	0	0	0	0.03519	1	499	499		22.58	4.3176	1	75367			67968	5092	47710	47787	73764	73764					0.06597145334569632
RPAVRPLH	8	Unmodified	_RPAVRPLH_					0	0	0		FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	FCGBP|p.P1897Hfs*99|1|0.09|ENSG00000275395|chr19:39894071-39894071|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.26123046875	2	473.290685	944.566818	-1.1435	-0.00054121	-0.52438	-0.00024818	-1.6679	-0.00078939	473.29029350468727	25.895	0.74161	25.731	25.457	26.199	-0.16331					33	20	3	0	0	0	0.027866	1	1210	1210		28.254	1.4582	1	491470			67969	17648	47711	47788	73765	73765					0.09231725702306903
RPAVRPPQ	8	Unmodified	_RPAVRPPQ_					0	0	0			REV__ENSG00000139797|ENST00000267291|RNF113B	REV__ENSG00000139797|ENST00000267291|RNF113B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.77435302734375	2	460.774868	919.535184	-0.33057	-0.00015232	0.13079	6.0267E-05	-0.19978	-9.2052E-05	460.77480760357395	24.057	0.69398	24.057	23.78	24.474	0					41	15	4	0	0	0	0.95417	1	1015	1015		44.531	2.0566	1	1886900	+		67970	23965	47712	47789	73766	73766					0.07219732948362889
RPAVRPPQ	8	Unmodified	_RPAVRPPQ_					0	0	0			REV__ENSG00000139797|ENST00000267291|RNF113B	REV__ENSG00000139797|ENST00000267291|RNF113B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.77435302734375	2	460.774868	919.535184	0.46258	0.00021315	-0.53938	-0.00024853	-0.076793	-3.5384E-05	460.7745258404312	23.991	0.76501	24.068	23.734	24.499	0.076241					46	16	4	0	0	0	0.96719	1	953	953		42.474	0	1	1739800	+		67971	23965	47712	47789	73767	73767					0.07219732948362889
RPAWMRTL	8	Unmodified	_RPAWMRTL_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000555062.1_1_14:102514125-102516009:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.790283203125	2	515.784379	1029.5542	-0.20756	-0.00010705	-1.5206	-0.00078429	-1.7281	-0.00089134	515.7835603613132	53.637	0.35979	53.637	53.439	53.799	0					16	9	2	0	0	0	0.027866	1	5783	5783		18.324	0	1	528040			67972	9952	47713	47790	73768	73768					0.04060946247773245
RPAWRLVE	8	Unmodified	_RPAWRLVE_					0	0	0			REV__ENSG00000182310|ENST00000637797|SPACA6	REV__ENSG00000182310|ENST00000637797|SPACA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7916259765625	2	513.795801	1025.57705	-0.78385	-0.00040274	-3.7432	-0.0019233	-4.5271	-0.002326	513.7938755172404	25.61	0.83949	25.575	25.313	26.152	-0.034397					68	19	5	0	0	0	0.53523	1	1228	1228		82.305	5.4584	1	1440700	+		67973	27467	47714	47791	73769	73769					0.0652828863690047
RPAWRLVE	8	Unmodified	_RPAWRLVE_					0	0	0			REV__ENSG00000182310|ENST00000637797|SPACA6	REV__ENSG00000182310|ENST00000637797|SPACA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7923583984375	2	513.795801	1025.57705	-0.17257	-8.8665E-05	-4.3058	-0.0022123	-4.4784	-0.002301	513.7935755033099	25.442	0.79526	25.522	25.294	26.09	0.080088					57	18	4	0	0	0	0.6536	1	1164	1164		71.296	5.4925	1	1742600	+		67974	27467	47714	47791	73770	73770					0.0652828863690047
RPAWRLVE	8	Unmodified	_RPAWRLVE_					0	0	0			REV__ENSG00000182310|ENST00000637797|SPACA6	REV__ENSG00000182310|ENST00000637797|SPACA6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	513.795801	1025.57705	-0.78385	-0.00040274	-3.7432	-0.0019233	-4.5271	-0.002326	513.7938755172404	25.61	0.83949	25.575	25.313	26.152	-0.034397	0.022844	7.9662E-05	NaN	82.305	68	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1440700	+		67975	27467	47714	47791							0.0652828863690047
RPCCDCCL	8	Unmodified	_RPCCDCCL_					0	0	0			REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	REV__nc|ENSG00000164300|Q86VE9-3|SERINC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7665100097656	2	456.663369	911.312184	-0.34065	-0.00015556	-2.6502	-0.0012102	-2.9908	-0.0013658	456.66340373644545	23.262	0.1178	23.201	23.111	23.229	-0.060862					4	2	2	0	0	0	0.027866	1	877	877		28.254	21.061	1	31045	+		67976	25732	47715	47792	73771	73771					-0.1470191148654294
RPCKHGAAQL	10	Unmodified	_RPCKHGAAQL_					0	0	0			REV__ENST00000399231.7_1_15:52689481-52689598:-|nuORF	REV__ENST00000399231.7_1_15:52689481-52689598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7893676757812	2	540.790192	1079.56583	-0.85058	-0.00045998	-3.83	-0.0020712	-4.6806	-0.0025312	540.7880211532611	46.611	1.0057	46.663	46.375	47.381	0.051395					70	27	4	0	0	0	0.62431	1	4585	4585		74.255	2.3776	1	4702300	+		67977	31821	47716	47793	73772	73772					0.02923143271095796
RPCLLLPSQ	9	Unmodified	_RPCLLLPSQ_					0	0	0		ENST00000371600.7_1_9:139937522-139937591:-|nuORF	ENST00000371600.7_1_9:139937522-139937591:-|nuORF	ENST00000371600.7_1_9:139937522-139937591:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.78955078125	2	513.791869	1025.56919	-1.0273	-0.00052781	-1.4651	-0.00075278	-2.4924	-0.0012806	513.790824320282	21.683	0.91604	21.754	21.254	22.17	0.071487					48	18	5	0	0	0	0.35646	1	664	664		68.787	0	1	2193300			67978	13002	47717	47794	73773	73773					0.05742393325112971
RPCLVAELV	9	Unmodified	_RPCLVAELV_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.28790283203125	2	500.28642	998.558287	-0.33128	-0.00016573	2.4299	0.0012156	2.0986	0.0010499	500.288101290541	23.906	0.77846	23.906	23.651	24.429	0					56	17	5	0	0	0	0.67308	1	990	990		47.916	3.7988	1	2615000			67979	5259	47718	47795	73774	73774					0.05894990950810097
RPCRRGDM	8	Oxidation (M)	_RPCRRGDM(Oxidation (M))_		RPCRRGDM(1)		RPCRRGDM(68)	0	0	1		ENST00000582783.5_1_19:40826279-40826525:-|nuORF	ENST00000582783.5_1_19:40826279-40826525:-|nuORF	ENST00000582783.5_1_19:40826279-40826525:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7420654296875	2	503.737103	1005.45965	-0.57018	-0.00028722	3.4607	0.0017433	2.8905	0.0014561	503.7389155086102	24.453	1.0069	24.453	24.166	25.173	0					56	22	4	0	0	0	0.68535	1	1062	1062		68.485	10.673	1	2953000			67980	17186	47719	47796	73775	73775		549			-0.042859355658606546
RPCRRGDM	8	Oxidation (M)	_RPCRRGDM(Oxidation (M))_		RPCRRGDM(1)		RPCRRGDM(66)	0	0	1		ENST00000582783.5_1_19:40826279-40826525:-|nuORF	ENST00000582783.5_1_19:40826279-40826525:-|nuORF	ENST00000582783.5_1_19:40826279-40826525:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7423400878906	2	503.737103	1005.45965	-1.2501	-0.00062973	4.226	0.0021288	2.9759	0.0014991	503.7392658472632	24.467	0.84685	24.42	24.133	24.98	-0.047148					51	18	4	0	0	0	0.71833	1	1058	1058		65.803	9.3694	1	2361100			67981	17186	47719	47796	73776	73776		549			-0.042859355658606546
RPCSPRRR	8	Unmodified	_RPCSPRRR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7991333007812	2	514.288151	1026.56175	0.17092	8.79E-05	1.2882	0.00066249	1.4591	0.00075039	514.2883783356503	19.578	0.46526	19.578	19.317	19.782	0					19	9	3	0	0	0	0.027866	1	401	401		87.754	16.459	1	58260			67982	12631	47720	47797	73777	73777					0.04953098568057612
RPCSPRRR	8	Unmodified	_RPCSPRRR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.288151	1026.56175	-0.29886	-0.0001537	0.32258	0.0001659	0.023727	1.2202E-05	514.288132234627	19.818	0.37462	19.7	19.495	19.87	-0.11872	-0.010013	-6.5238E-05	NaN	87.754	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39752			67983	12631	47720	47797							0.04953098568057612
RPCSPRRR	8	Unmodified	_RPCSPRRR_					0	0	0		ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	ENST00000354700.9_1_1:1228768-1228924:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.288151	1026.56175	1.7036	0.00087617	-0.71657	-0.00036852	0.98708	0.00050764	514.2874000927299	19.785	0.38091	19.851	19.637	20.018	0.066195	0.14155	-0.0011341	NaN	87.754	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64995			67984	12631	47720	47797							0.04953098568057612
RPCVRSRLRH	10	Unmodified	_RPCVRSRLRH_					0	0	0			REV__ENST00000259351.9_1_9:129677065-129724587:+|nuORF	REV__ENST00000259351.9_1_9:129677065-129724587:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.2646789550781	3	427.247402	1278.72038	0.18924	8.0852E-05	-1.334	-0.00056997	-1.1448	-0.00048911	427.2469872867807	54.065	0.70642	53.819	53.559	54.265	-0.2453					42	22	3	0	0	0	0.03519	1	5763	5763		37.508	2.33	1	239550	+		67985	29588	47721	47798	73778	73778					0.09216392476332658
RPDDRSQGAII	11	Unmodified	_RPDDRSQGAII_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	614.3258056640625	2	614.32565	1226.63675	-1.1031	-0.00067764	0.9694	0.00059553	-0.13366	-8.2114E-05	614.3261937287169	34.636	0.93488	34.636	34.371	35.306	0					67	24	4	0	0	0	0.062006	2	2600	2600;2612		101.46	24.686	1	2458300			67986	3392	47722	47799	73779;73780	73779					0.03249514789604291
RPDDRSQGAII	11	Unmodified	_RPDDRSQGAII_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.8864440917969	3	409.886192	1226.63675	0.50506	0.00020702	-0.58502	-0.00023979	-0.079963	-3.2776E-05	409.88602842554144	34.648	1.3151	34.648	34.332	35.647	0					99	34	4	0	0	0	0.61955	1	2609	2609		68.626	5.1993	1	12931000			67987	3392	47722	47799	73781	73781					0.03249514789604291
RPDDRSQGAII	11	Unmodified	_RPDDRSQGAII_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	614.32568359375	2	614.32565	1226.63675	-0.31286	-0.0001922	0.15091	9.2707E-05	-0.16195	-9.9489E-05	614.3257231327694	34.476	1.1363	34.471	34.152	35.288	-0.0045624					69	29	4	0	0	0	0.008485	3	2579	2554;2564;2579		125.71	46	1	2361000			67988	3392	47722	47799	73782;73783;73784	73784					0.03249514789604291
RPDDRSQGAII	11	Unmodified	_RPDDRSQGAII_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	614.3257446289062	2	614.32565	1226.63675	-1.6554	-0.001017	1.7057	0.0010479	0.050257	3.0874E-05	614.3266239719386	34.472	0.91326	34.522	34.213	35.127	0.050255					63	23	4	0	0	0	0.16342	2	2526	2526;2540		96.034	15.579	1	2237100			67989	3392	47722	47799	73785;73786	73785					0.03249514789604291
RPDFGGPPVC	10	Unmodified	_RPDFGGPPVC_					0	0	0		ENST00000554722.1_1_15:27016972-27018871:-|nuORF;GABRB3|p.E295Rfs*75|1|0.38|ENSG00000166206|chr15:26561129-26561129|C/-|frameshift_variant;nc|ENSG00000166206|P28472-2|GABRB3;ENSG00000166206|ENST00000311550|GABRB3	ENST00000554722.1_1_15:27016972-27018871:-|nuORF	ENST00000554722.1_1_15:27016972-27018871:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7535400390625	2	522.750201	1043.48585	2.9073	0.0015198	3.8461	0.0020105	6.7534	0.0035303	522.7520667420995	17.125	0.62427	17.125	16.874	17.498	0					26	13	3	0	0	0	1.0002	1	133	133		45.972	7.1661	1	183940			67990	7524	47723	47800	73787	73787					-0.03415343122719605
RPDGFPKP	8	Unmodified	_RPDGFPKP_					0	0	0		ENST00000405520.5_1_20:44441294-44441366:+|nuORF	ENST00000405520.5_1_20:44441294-44441366:+|nuORF	ENST00000405520.5_1_20:44441294-44441366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	457.248152	912.481751	-0.12489	-5.7104E-05	-4.117	-0.0018825	-4.2419	-0.0019396	457.24607703627277	24.586	1.0159	24.586	24.036	25.052	0					50	22	3	0	0	0	0.74904	1	1089	1089		63.306	4.5243	1	622620			67991	13721	47724	47801	73788	73788					0.022009354458418784
RPDGPAFPR	9	Unmodified	_RPDGPAFPR_					0	0	0			REV__ENST00000427057.6_1_12:3973063-3982509:-|nuORF	REV__ENST00000427057.6_1_12:3973063-3982509:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27197265625	2	506.769783	1011.52501	0.23646	0.00011983	3.5289	0.0017884	3.7654	0.0019082	506.7714332693304	25.234	1.1417	25.314	24.276	25.418	0.08009					33	25	2	0	0	0	0.024457	1	1001	1001		45.952	7.1458	1	108070	+		67992	32282	47725	47802	73789	73789					0.019711252231218168
RPDHLNSHV	9	Unmodified	_RPDHLNSHV_					0	0	0		nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ	nc|ENSG00000103495|P56270-3|MAZ	nc|ENSG00000103495|P56270-3|MAZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7771606445312	2	537.775597	1073.53664	-1.1868	-0.00063826	4.0576	0.0021821	2.8707	0.0015438	537.7776462424927	20.2	0.67933	20.2	19.929	20.609	0					30	13	3	0	0	0	0.6238	1	511	511		51.193	8.3284	1	335930			67993	2509	47726	47803	73790	73790					0.002813222464737919
RPDHLNSHV	9	Unmodified	_RPDHLNSHV_					0	0	0		nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ	nc|ENSG00000103495|P56270-3|MAZ	nc|ENSG00000103495|P56270-3|MAZ	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	537.775597	1073.53664	-0.9265	-0.00049825	3.7302	0.002006	2.8037	0.0015078	537.777450495272	20.444	0.86664	20.339	20.129	20.995	-0.10477	0.069391	-0.00017993	NaN	51.193	39	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374470			67994	2509	47726	47803							0.002813222464737919
RPDKDQEPMGA	11	Unmodified	_RPDKDQEPMGA_					0	0	0			REV__nc|ENSG00000183169|Q3SYA9|POM121L1P	REV__nc|ENSG00000183169|Q3SYA9|POM121L1P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.19500732421875	3	415.196038	1242.56629	-0.5114	-0.00021233	-1.599	-0.00066388	-2.1104	-0.00087621	415.1952962157798	39.484	0.83556	39.32	38.971	39.806	-0.16458					58	21	4	0	0	0	0.95911	1	3356	3356		45.908	3.57	1	2292100	+		67995	37001	47727	47804	73791	73791					-0.04529526590363275
RPDLAATAP	9	Unmodified	_RPDLAATAP_					0	0	0		ENST00000606771.1_1_6:17706507-17706798:+|nuORF	ENST00000606771.1_1_6:17706507-17706798:+|nuORF	ENST00000606771.1_1_6:17706507-17706798:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.748779296875	2	456.250892	910.48723	-0.79575	-0.00036306	1.9671	0.0008975	1.1714	0.00053444	456.2514680177262	29.347	1.7673	29.347	28.99	30.758	0					71	43	3	0	0	0	0.024447	1	1904	1904		40.778	5.1599	1	485150			67996	17568	47728	47805	73792	73792					0.028406142376525167
RPDLVGGR	8	Unmodified	_RPDLVGGR_					0	0	0			REV__ENST00000244745.3_2_6:21596111-21596468:+|nuORF	REV__ENST00000244745.3_2_6:21596111-21596468:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2693786621094	2	435.251226	868.487899	-0.077087	-3.3552E-05	0.51168	0.00022271	0.4346	0.00018916	435.25125235566554	22.848	0.91441	22.848	22.291	23.206	0					24	19	2	0	0	0	0.027866	1	889	889		14.865	7.6715	1	38127	+		67997	29466	47729	47806	73793	73793					0.04839453677379879
RPDPKQEKK	9	Unmodified	_RPDPKQEKK_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3220825195312	2	563.32238	1124.63021	-0.65739	-0.00037032	0.13228	7.4515E-05	-0.52511	-0.00029581	563.3223044487321	33.875	0.62379	33.875	33.626	34.25	0					35	15	3	0	0	0	0.82115	1	2481	2481		37.812	1.4939	1	1506600			67998	14886	47730	47807	73794	73794					0.07287621628893248
RPDPKQEKK	9	Unmodified	_RPDPKQEKK_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.32238	1124.63021	-0.61364	-0.00034568	0.086136	4.8523E-05	-0.5275	-0.00029715	563.3223241857588	33.703	0.70242	33.698	33.449	34.152	-0.0045624	-0.085126	-0.00011703	NaN	37.812	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518900			67999	14886	47730	47807							0.07287621628893248
RPDPKQEKK	9	Unmodified	_RPDPKQEKK_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.32238	1124.63021	-0.55275	-0.00031138	0.43269	0.00024375	-0.12006	-6.7632E-05	563.3224367874633	33.72	0.72157	33.776	33.538	34.26	0.056572	-0.0067157	0.00027341	NaN	37.812	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1248900			68000	14886	47730	47807							0.07287621628893248
RPDPMTYF	8	Unmodified	_RPDPMTYF_					0	0	0			REV__nc|ENSG00000115866|P14868-2|DARS1	REV__nc|ENSG00000115866|P14868-2|DARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7693481445312	2	513.739302	1025.46405	-0.10457	-5.3721E-05	3.1855	0.0016365	3.0809	0.0015828	513.7409375891309	38.897	0.21307	38.671	38.523	38.736	-0.2257					7	5	2	0	0	0	0.027866	1	3221	3221		42.474	1.9018	1	81464	+		68001	22238	47731	47808	73795	73795					-0.04766147871305293
RPDPTPKL	8	Unmodified	_RPDPTPKL_					0	0	0		ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	ENSG00000198026|ENST00000322927|ZNF335	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2691650390625	2	462.269084	922.523616	-0.16979	-7.8487E-05	0.14911	6.8927E-05	-0.020681	-9.5603E-06	462.2690289586842	45.655	1.3816	45.655	45.278	46.659	0					97	39	4	0	0	0	0.91956	1	4490	4490		49.442	3.4896	1	10750000			68002	10085	47732	47809	73796	73796					0.059254911343600725
RPDQEVAQ	8	Unmodified	_RPDQEVAQ_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7821044921875	2	471.735606	941.456658	-0.77691	-0.0003665	0.32988	0.00015562	-0.44703	-0.00021088	471.7364159967497	29.718	0.71711	29.718	29.26	29.977	0					39	17	4	0	0	0	0.027866	1	1807	1807		29.15	1.2673	1	260020			68003	2394	47733	47810	73797	73797					-0.016411641473837335
RPDRLYDEVQ	10	Unmodified	_RPDRLYDEVQ_					0	0	0		nc|ENSG00000144306|Q0VDG4-2|SCRN3	nc|ENSG00000144306|Q0VDG4-2|SCRN3	nc|ENSG00000144306|Q0VDG4-2|SCRN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	645.8248901367188	2	645.825483	1289.63641	-0.72674	-0.00046934	-0.056163	-3.6271E-05	-0.7829	-0.00050562	645.8253869246067	21.953	1.0586	22.024	21.546	22.604	0.071487					61	21	4	0	0	0	1.0236	1	684	684		42.864	2.0861	1	454150			68004	18355	47734	47811	73798	73798					0.003180950697469598
RPDRPPIL	8	Unmodified	_RPDRPPIL_					0	0	0			REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.25634765625	2	482.290351	962.566149	-1.007	-0.00048569	0.97846	0.0004719	-0.028581	-1.3784E-05	482.2907148358124	39.403	0.46434	39.427	39.17	39.635	0.023727					20	12	2	0	0	0	0.027866	1	3306	3306		47.916	14.4	1	166530	+		68005	34570	47735	47812	73799	73799					0.08336886262600274
RPDRPPIL	8	Unmodified	_RPDRPPIL_					0	0	0			REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.290351	962.566149	0.48762	0.00023518	-0.26442	-0.00012752	0.22321	0.00010765	482.28992532683293	39.631	0.45034	39.631	39.357	39.808	0	0.084273	-0.00086393	NaN	30.504	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233960	+		68006	34570	47735	47812							0.08336886262600274
RPDRPPIL	8	Unmodified	_RPDRPPIL_					0	0	0			REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.290351	962.566149	-0.95419	-0.0004602	0.65625	0.00031651	-0.29793	-0.00014369	482.29042744213444	39.654	0.4983	39.541	39.255	39.754	-0.11222	-0.00566	2.4132E-05	NaN	30.504	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212810	+		68007	34570	47735	47812							0.08336886262600274
RPDRPPIL	8	Unmodified	_RPDRPPIL_					0	0	0			REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	REV__ENST00000531965.5_1_16:3115395-3117388:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	482.290351	962.566149	-0.41021	-0.00019784	0.91473	0.00044117	0.50452	0.00024333	482.29055920086535	39.813	0.58847	39.589	39.185	39.773	-0.22441	0.041723	0.00027345	NaN	30.504	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143990	+		68008	34570	47735	47812							0.08336886262600274
RPDSRHHSL	9	Unmodified	_RPDSRHHSL_					0	0	0		ENST00000496583.1_1_19:54695101-54695536:+|nuORF;TSEN34|p.R220Lfs*25|1|0.35|ENSG00000170892|chr19:54192284-54192285|-/GCTA|frameshift_variant;ENSG00000170892|ENST00000396388|TSEN34	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENST00000496583.1_1_19:54695101-54695536:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.7864379882812	2	552.786496	1103.55844	0.0075554	4.1765E-06	0.22528	0.00012453	0.23284	0.00012871	552.7865758471205	17.898	0.44275	17.755	17.552	17.995	-0.14278					17	8	3	0	0	0	0.45795	1	213	213		62.107	12.666	1	97525			68009	8089	47736	47813	73800	73800					0.010801269950434289
RPEAEEEELP	10	Unmodified	_RPEAEEEELP_					0	0	0		ENST00000560078.1_1_15:41105856-41106320:+|nuORF;ENST00000563497.1_1_15:41105865-41106421:+|nuORF;nc|ENSG00000166140|Q96K21-4|ZFYVE19;nc|ENSG00000166140|Q96K21-3|ZFYVE19;nc|ENSG00000166140|Q96K21-2|ZFYVE19;ENSG00000166140|ENST00000355341|ZFYVE19	ENST00000560078.1_1_15:41105856-41106320:+|nuORF	ENST00000560078.1_1_15:41105856-41106320:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	599.782470703125	2	599.78295	1197.55135	2.0874	0.001252	1.9897	0.0011934	4.0772	0.0024454	599.7840559874656	16.503	0.1909	16.503	16.386	16.577	0					10	6	2	0	0	0	1.1082	1	73	73		14.865	0.72775	1	54352			68010	7508	47737	47814	73801	73801					-0.03952695186717392
RPEARHGSL	9	Unmodified	_RPEARHGSL_					0	0	0			REV__ENST00000264235.12_2_3:119812880-119813177:-|nuORF	REV__ENST00000264235.12_2_3:119812880-119813177:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.7793273925781	2	511.778139	1021.54173	-0.73891	-0.00037816	2.0417	0.0010449	1.3028	0.00066673	511.7793877978541	29.516	1.312	29.343	28.937	30.249	-0.17258					104	30	6	0	0	0	0.50848	1	1809	1809		58.782	9.2459	1	8007700	+		68011	29716	47738	47815	73802	73802					0.03181626109096669
RPEDVVNL	8	Unmodified	_RPEDVVNL_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2561340332031	2	471.256174	940.497795	0.21941	0.0001034	-0.4876	-0.00022978	-0.26819	-0.00012639	471.2558087949329	44.608	0.86697	44.645	44.306	45.173	0.0369					67	24	4	0	0	0	0.71833	1	4226	4226		65.803	3.6958	1	3576800			68012	9740	47739	47816	73803	73803					0.025165968920987325
RPEEAGRAL	9	Unmodified	_RPEEAGRAL_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.77276611328125	2	499.772522	997.530492	-0.38724	-0.00019353	0.84944	0.00042452	0.4622	0.00023099	499.77256736682114	24.617	0.90732	24.617	24.341	25.248	0					36	20	4	0	0	0	0.48817	1	1088	1088		60.118	14.166	1	1010900			68013	7128	47740	47817	73804	73804					0.03162804014948506
RPEEAGRAL	9	Unmodified	_RPEEAGRAL_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7722473144531	2	499.772522	997.530492	-1.2575	-0.00062845	1.6587	0.00082899	0.40126	0.00020054	499.7730360367391	24.661	1.1233	24.614	24.177	25.3	-0.047146					40	25	3	0	0	0	0.26966	1	1077	1077		79.713	10.926	1	965160			68014	7128	47740	47817	73805	73805					0.03162804014948506
RPEEGKESL	9	Unmodified	_RPEEGKESL_					0	0	0		ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	ENSG00000157600|ENST00000372068|TMEM164	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2554931640625	2	522.769645	1043.52474	-0.87198	-0.00045584	0.10373	5.4228E-05	-0.76825	-0.00040162	522.7697862399016	23.6	0.62643	23.539	23.229	23.856	-0.06086					42	14	4	0	0	0	0.024257	1	929	929		58.23	12.278	1	1404400			68015	6610	47741	47818	73806	73806					0.004716607126283634
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2860717773438	2	519.788173	1037.56179	-0.58912	-0.00030622	-2.9967	-0.0015577	-3.5858	-0.0018639	520.287323436792	26.54	0.86618	26.54	26.243	27.109	0					65	20	5	0	0	0	0.30449	2	1368	1359;1368		75.043	19.493	1	4095700			68016	1110	47742	47819	73807;73808	73808					0.04451377049053917
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7877807617188	2	519.788173	1037.56179	-0.59172	-0.00030757	-2.97	-0.0015437	-3.5617	-0.0018513	520.2874003891857	26.529	0.81359	26.506	26.243	27.057	-0.023088					66	19	5	0	0	0	0.16638	3	1348	1348;1358;1371		95.815	31.608	1	4495200			68017	1110	47742	47819	73809;73810;73811	73809					0.04451377049053917
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7879028320312	2	519.788173	1037.56179	-0.58925	-0.00030628	-3.0489	-0.0015848	-3.6382	-0.0018911	520.2873381912436	26.353	0.96976	26.434	26.131	27.1	0.081293					63	23	5	0	0	0	0.34489	3	1279	1279;1290;1302		69.628	10.846	1	4127600			68018	1110	47742	47819	73812;73813;73814	73812					0.04451377049053917
RPEEVEILVC	10	Unmodified	_RPEEVEILVC_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8087768554688	2	593.810456	1185.60636	-2.0367	-0.0012094	-0.72489	-0.00043045	-2.7616	-0.0016399	593.8101463873134	21.58	0.86597	21.58	21.146	22.012	0					65	17	5	0	0	0	0.98754	1	709	709		47.657	3.5405	1	3271200			68019	7401	47743	47820	73815	73815					0.02098020080211427
RPEEVEILVC	10	Unmodified	_RPEEVEILVC_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8087158203125	2	593.810456	1185.60636	-1.733	-0.0010291	-0.82014	-0.00048701	-2.5531	-0.0015161	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	0.75995	1	873	873		63.306	2.3343	1	2217700			68020	7401	47743	47820	73816	73816					0.02098020080211427
RPEGMDLL	8	Unmodified	_RPEGMDLL_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2540283203125	2	465.739302	929.464052	-0.065448	-3.0482E-05	-3.2566	-0.0015167	-3.3221	-0.0015472	465.73770431894644	40.208	0.92481	40.231	39.67	40.595	0.023003					48	25	3	0	0	0	0.027866	1	3426	3426		31.955	11.958	1	1071100	+		68021	25074	47744	47821	73817	73817					-0.0035014787131331104
RPELEEKTLD	10	Unmodified	_RPELEEKTLD_					0	0	0			REV__ENSG00000085377|ENST00000652536|PREP	REV__ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.58258056640625	3	410.550587	1228.62993	0.27768	0.000114	2.0036	0.00082257	2.2812	0.00093657	410.8863266202765	35.023	0.39666	35.067	34.832	35.229	0.04406					12	10	2	0	0	0	0.03519	1	2612	2612		12.957	1.9593	1	67538	+		68022	20747	47745	47822	73818	73818					0.024761571183944397
RPELEEKTLD	10	Unmodified	_RPELEEKTLD_					0	0	0			REV__ENSG00000085377|ENST00000652536|PREP	REV__ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.58258056640625	3	410.550587	1228.62993	0.36766	0.00015094	3.8892	0.0015967	4.2568	0.0017476	410.55198387720225	35.362	0.53118	35.406	35.085	35.616	0.044056					17	13	2	0	0	0	0.03519	1	2612	2612		12.957	1.9593	1	93339	+		68023	20747	47745	47822	73819	73819					0.024761571183944397
RPELLVFG	8	Unmodified	_RPELLVFG_					0	0	0			REV__nc|ENSG00000011021|P51797-4|CLCN6	REV__nc|ENSG00000011021|P51797-4|CLCN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2543640136719	2	465.774003	929.533452	-0.45436	-0.00021163	-4.2493	-0.0019792	-4.7036	-0.0021908	465.77200162450004	40.045	0.53161	39.933	39.677	40.208	-0.11223					34	13	4	0	0	0	0.027866	1	3440	3440		33.516	19.74	1	600390	+		68024	36435	47746	47823	73820	73820					0.06586679139763874
RPELSSYA	8	Unmodified	_RPELSSYA_					0	0	0			REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	REV__ENST00000477168.6_1_19:36037622-36038346:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.7349548339844	2	461.735074	921.455596	-0.36915	-0.00017045	-1.3565	-0.00062633	-1.7256	-0.00079678	461.7346477897209	103.79	0.73402	103.66	103.29	104.02	-0.12927					37	17	3	0	0	0	0.94517	1	12917	12917		45.952	10.334	1	153390	+		68025	33327	47747	47824	73821	73821					-0.00827378516294175
RPELVGLF	8	Unmodified	_RPELVGLF_					0	0	0			REV__ENST00000379263.7_1_7:102985147-102985279:-|nuORF	REV__ENST00000379263.7_1_7:102985147-102985279:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7377624511719	2	465.774003	929.533452	-0.536	-0.00024965	-3.8354	-0.0017864	-4.3714	-0.0020361	465.7721056584958	45.429	0.36633	45.429	45.214	45.58	0					15	10	2	0	0	0	0.027866	1	4377	4377		30.504	3.7075	1	290820	+		68026	31429	47748	47825	73822	73822					0.06586679139763874
RPEMYQYSL	9	Unmodified	_RPEMYQYSL_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	593.808837890625	2	593.781699	1185.54884	-0.84186	-0.00049988	-1.5452	-0.00091752	-2.3871	-0.0014174	593.7807319357167	22.675	0.27744	22.749	22.607	22.884	0.073954					8	5	2	0	0	0	0.024397	1	790	790		39.253	20.991	1	18147			68027	3042	47749	47826	73823	73823					-0.036508221253598094
RPERGIDVP	9	Unmodified	_RPERGIDVP_					0	0	0			REV__ENST00000464807.1_1_22:21348995-21349371:+|nuORF	REV__ENST00000464807.1_1_22:21348995-21349371:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2861328125	2	519.788173	1037.56179	-0.58912	-0.00030622	-2.9967	-0.0015577	-3.5858	-0.0018639	520.287323436792	26.54	0.86618	26.54	26.243	27.109	0					65	20	5	0	0	0	0.42604	1	1381	1381		64.207	4.089	1	4095700	+		68028	32990	47750	47827	73824	73824					0.04451377049053917
RPERLRPVW	9	Unmodified	_RPERLRPVW_					0	0	0			REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	REV__nc|ENSG00000146856|Q8NEM8-2|AGBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5721740722656	3	403.57188	1207.69381	0.54672	0.00022064	-0.68296	-0.00027562	-0.13625	-5.4985E-05	403.57158804731324	42.75	1.6081	42.517	42.155	43.763	-0.23262					120	42	4	0	0	0	0.82115	1	3895	3895		37.812	8.2608	1	5880100	+		68029	24516	47751	47828	73825	73825					0.09827026856646626
RPERRTWL	8	Unmodified	_RPERRTWL_					0	0	0		ENST00000503886.5_1_10:63170188-63170446:-|nuORF	ENST00000503886.5_1_10:63170188-63170446:-|nuORF	ENST00000503886.5_1_10:63170188-63170446:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.316162109375	2	557.317432	1112.62031	-0.60389	-0.00033656	0.037074	2.0662E-05	-0.56681	-0.00031589	557.3171323204261	21.668	1.1538	21.668	20.998	22.152	0					65	23	4	0	0	0	0.91956	1	675	675		49.442	6.5773	1	601470			68030	15703	47752	47829	73826	73826					0.0685047841418509
RPETLGLQ	8	Unmodified	_RPETLGLQ_					0	0	0			REV__nc|ENSG00000133216|P29323|EPHB2	REV__nc|ENSG00000133216|P29323|EPHB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2455749511719	2	457.258717	912.50288	-1.0268	-0.00046952	1.465	0.00066987	0.43814	0.00020034	457.25914252341926	24.557	0.53782	24.51	24.22	24.758	-0.047148					19	11	2	0	0	0	0.027866	1	1078	1078		98.629	24.374	1	56683	+		68031	36669	47753	47830	73827	73827					0.04312900754723614
RPETMVIY	8	Unmodified	_RPETMVIY_					0	0	0		nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7645568847656	2	504.762778	1007.511	-1.1999	-0.00060565	4.4546	0.0022485	3.2547	0.0016429	504.76496920813327	20.728	1.0685	20.728	20.274	21.342	0					59	21	4	0	0	0	1.0239	1	576	576		33.516	1.5607	1	756930			68032	817	47754	47831	73828	73828					0.007547116798150455
RPETMVIY	8	Unmodified	_RPETMVIY_					0	0	0		nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.76446533203125	2	504.762778	1007.511	-0.55985	-0.00028259	3.7062	0.0018707	3.1463	0.0015882	504.7645902310088	20.88	0.71893	20.775	20.473	21.192	-0.10455					47	14	4	0	0	0	0.96719	1	581	581		42.474	9.662	1	868740			68033	817	47754	47831	73829	73829					0.007547116798150455
RPETTRERLKR	11	Unmodified	_RPETTRERLKR_					0	0	0			REV__ENST00000534336.1_1_11:65266767-65266884:+|nuORF	REV__ENST00000534336.1_1_11:65266767-65266884:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.28302001953125	3	481.283057	1440.82734	0.15022	7.2296E-05	0.99176	0.00047732	1.142	0.00054962	481.2833604720617	101.32	1.8982	101.31	100.65	102.55	-0.0054474					137	43	4	0	0	0	1.0215	1	12866	12866		32.034	3.4574	1	1065800	+		68034	34634	47755	47832	73830	73830					0.12456221171669313
RPEWEPGPA	9	Unmodified	_RPEWEPGPA_					0	0	0			REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7698364257812	2	519.753798	1037.49304	-0.79612	-0.00041379	4.1393	0.0021514	3.3431	0.0017376	519.7557611207691	36.246	0.81004	36.284	35.735	36.545	0.038044					43	22	2	0	0	0	0.024405	1	2713	2713		44.117	8.4985	1	498090	+		68035	32412	47756	47833	73831	73831					-0.024202872506748463
RPEWEPGPA	9	Unmodified	_RPEWEPGPA_					0	0	0			REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.753798	1037.49304	-0.60133	-0.00031254	4.326	0.0022485	3.7247	0.0019359	519.755362935242	36.403	0.73198	36.198	35.752	36.484	-0.20518	0.041565	0.00019966	NaN	42.396	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181720	+		68036	32412	47756	47833							-0.024202872506748463
RPEWEPGPA	9	Unmodified	_RPEWEPGPA_					0	0	0			REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.753798	1037.49304	0.39108	0.00020327	3.5411	0.0018405	3.9322	0.0020438	519.7547810318551	36.432	0.66221	36.215	35.746	36.408	-0.21661	0.058604	-0.0006162	NaN	42.396	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285790	+		68037	32412	47756	47833							-0.024202872506748463
RPEWEPGPA	9	Unmodified	_RPEWEPGPA_					0	0	0			REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	REV__ENST00000433834.5_1_1:19810851-19811010:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.753798	1037.49304	1.1719	0.0006091	1.995	0.0010369	3.1669	0.001646	519.7545421190563	36.206	0.76592	36.008	35.609	36.375	-0.19829	-0.14842	-0.0022234	NaN	42.396	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208860	+		68038	32412	47756	47833							-0.024202872506748463
RPFDGLPL	8	Unmodified	_RPFDGLPL_					0	0	0			REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2824401855469	2	457.758352	913.502152	0.11812	5.407E-05	-3.9209	-0.0017948	-3.8028	-0.0017408	457.75647406168713	34.274	0.58041	34.269	33.988	34.568	-0.0045624					32	14	3	0	0	0	0.027866	1	2565	2565		26.796	5.0938	1	982320	+		68039	30206	47757	47834	73832	73832					0.041941061056718354
RPFDGLPL	8	Unmodified	_RPFDGLPL_					0	0	0			REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2825927734375	2	457.758352	913.502152	-0.19764	-9.047E-05	-1.7332	-0.00079337	-1.9308	-0.00088384	457.7564754245639	34.983	1.1048	35.028	34.513	35.617	0.04501					73	28	4	0	0	0	0.027866	1	2580	2580		65.803	23.407	1	1640200	+		68040	30206	47757	47834	73833	73833					0.041941061056718354
RPFDGLPL	8	Unmodified	_RPFDGLPL_					0	0	0			REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	REV__ENST00000311481.10_1_11:66043945-66044302:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.28240966796875	2	457.758352	913.502152	-0.48544	-0.00022221	-3.317	-0.0015184	-3.8024	-0.0017406	457.7568423483131	34.217	1.1091	34.267	33.765	34.874	0.050255					47	27	3	0	0	0	0.027866	1	2567	2567		50.025	0	1	834150	+		68041	30206	47757	47834	73834	73834					0.041941061056718354
RPFGASVGDS	10	Unmodified	_RPFGASVGDS_					0	0	0		ENST00000590153.1_1_17:28252476-28257245:-|nuORF	ENST00000590153.1_1_17:28252476-28257245:-|nuORF	ENST00000590153.1_1_17:28252476-28257245:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7414245605469	2	496.743431	991.472308	-1.1579	-0.0005752	-3.3362	-0.0016572	-4.4941	-0.0022324	496.7416700945716	26.127	0.94948	25.963	25.716	26.666	-0.16331					84	26	4	0	0	0	1.0508	1	1344	1344		39.253	0.44669	1	7449900			68042	17322	47758	47835	73835	73835					-0.023768776303199957
RPFLLLAM	8	Unmodified	_RPFLLLAM_					0	0	0			REV__ENST00000381341.6_1_2:15746298-15747313:+|nuORF	REV__ENST00000381341.6_1_2:15746298-15747313:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7508239746094	2	480.788598	959.562644	-0.41472	-0.00019939	3.6289	0.0017447	3.2142	0.0015454	480.7900414825403	32.588	0.48011	32.6	32.338	32.818	0.011799					23	12	3	0	0	0	0.027866	1	2219	2219		42.474	21.993	1	156300	+		68043	31514	47759	47836	73836	73836					0.08124500164399251
RPFPAHVPG	9	Unmodified	_RPFPAHVPG_					0	0	0			REV__ENST00000275262.11_1_6:163986274-163986385:+|nuORF	REV__ENST00000275262.11_1_6:163986274-163986385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2705993652344	2	489.269419	976.524284	-0.39377	-0.00019266	2.0812	0.0010183	1.6874	0.00082559	489.270593923878	38.922	1.5173	38.922	38.433	39.951	0					145	41	5	0	0	0	0.4855	1	3289	3289		60.294	2.4827	1	53004000	+		68044	29844	47760	47837	73837	73837					0.03508330574084084
RPFPAHVPG	9	Unmodified	_RPFPAHVPG_					0	0	0			REV__ENST00000275262.11_1_6:163986274-163986385:+|nuORF	REV__ENST00000275262.11_1_6:163986274-163986385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.27056884765625	2	489.269419	976.524284	-0.59343	-0.00029035	2.2046	0.0010787	1.6112	0.00078831	489.2706764402166	38.923	2.0896	38.824	37.902	39.991	-0.098755					164	57	5	0	0	0	0.33184	2	3333	3313;3333		71.378	2.8932	1	52366000	+		68045	29844	47760	47837	73838;73839	73839					0.03508330574084084
RPFPAHVPG	9	Unmodified	_RPFPAHVPG_					0	0	0			REV__ENST00000275262.11_1_6:163986274-163986385:+|nuORF	REV__ENST00000275262.11_1_6:163986274-163986385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2699279785156	2	489.269419	976.524284	-1.1824	-0.00057849	3.2509	0.0015906	2.0685	0.0010121	489.27120220852095	39.189	1.8352	39.213	38.727	40.563	0.023727					150	50	5	0	0	0	0.26797	3	3268	3268;3280;3292		79.939	3.0926	1	46415000	+		68046	29844	47760	47837	73840;73841;73842	73840					0.03508330574084084
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7794494628906	2	449.779088	897.543623	0.49228	0.00022142	-0.54447	-0.00024489	-0.052196	-2.3477E-05	449.7787585312412	67.773	1.6521	67.773	67.285	68.938	0					102	42	4	0	0	0	0.65272	1	8116	8116		71.378	8.3995	1	7631000			68047	10961	47761	47838	73843	73843					0.09075286864992904
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.779541015625	2	449.779088	897.543623	0.36003	0.00016193	-0.34141	-0.00015356	0.018615	8.3727E-06	449.77884689252295	68.133	1.5177	67.845	67.347	68.864	-0.28834					104	38	4	0	0	0	0.65272	1	8144	8144		71.378	0	1	7105400			68048	10961	47761	47838	73844	73844					0.09075286864992904
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7789611816406	2	449.779088	897.543623	0.38029	0.00017104	-0.32397	-0.00014572	0.056314	2.5329E-05	449.778851411549	67.892	1.6712	67.911	67.466	69.137	0.018913					110	43	4	0	0	0	0.65272	3	8017	8017;8041;8054		71.378	5.4805	1	6770300			68049	10961	47761	47838	73845;73846;73847	73845					0.09075286864992904
RPFPGPPP	8	Unmodified	_RPFPGPPP_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.54840087890625	2	432.739963	863.465373	-0.38419	-0.00016626	-3.8296	-0.0016572	-4.2138	-0.0018235	432.7381662742421	24.522	0.66674	24.522	24.297	24.964	0					22	14	2	0	0	0	0.027866	1	1070	1070		44.531	0	1	49765			68050	8747	47762	47839	73848	73848					0.028178542797604678
RPFPLRPLNR	10	Unmodified	_RPFPLRPLNR_					0	0	0			REV__ENST00000325954.8_2_12:120972163-120972457:+|nuORF	REV__ENST00000325954.8_2_12:120972163-120972457:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.59246826171875	3	422.591163	1264.75166	0.1726	7.2939E-05	3.8124	0.0016111	3.985	0.001684	422.5926910721887	50.01	3.5693	49.73	48.973	52.543	-0.27977					269	94	5	0	0	0	1.1211	1	5067	5067		21.686	0.8486	1	10812000	+		68051	30397	47763	47840	73849	73849					0.12987288782073847
RPFRKHGV	8	Unmodified	_RPFRKHGV_					0	0	0		ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000422509.1_1_9:37490797-37490851:-|nuORF;ENST00000473558.5_1_13:27827913-27828439:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.79638671875	2	498.796135	995.577717	0.88511	0.00044149	-0.77741	-0.00038777	0.1077	5.3722E-05	498.7955811843013	18.088	0.69086	17.932	17.655	18.346	-0.15637					32	13	3	0	0	0	0.81662	1	259	259		57.811	5.5121	1	244950			68052	3908	47764	47841	73850	73850					0.07975128076611782
RPFRKHGV	8	Unmodified	_RPFRKHGV_					0	0	0		ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000422509.1_1_9:37490797-37490851:-|nuORF;ENST00000473558.5_1_13:27827913-27828439:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.79620361328125	2	498.796135	995.577717	3.2358	0.001614	-3.0359	-0.0015143	0.19995	9.9736E-05	498.79445005317547	18.158	0.74733	17.915	17.677	18.424	-0.24256					30	14	3	0	0	0	0.96719	1	250	250		42.474	1.6963	1	198740			68053	3908	47764	47841	73851	73851					0.07975128076611782
RPFRPILN	8	Unmodified	_RPFRPILN_					0	0	0		ENST00000261693.10_1_12:125267275-125270928:-|nuORF	ENST00000261693.10_1_12:125267275-125270928:-|nuORF	ENST00000261693.10_1_12:125267275-125270928:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7635192871094	2	506.806168	1011.59778	0.12303	6.2354E-05	-1.9077	-0.00096683	-1.7847	-0.00090448	506.8050588172807	49.679	0.37437	49.498	49.307	49.681	-0.18071					16	9	2	0	0	0	0.027866	1	4981	4981		18.324	0	1	310950			68054	11479	47765	47842	73852	73852					0.0924487901656903
RPFSCAIRF	9	Unmodified	_RPFSCAIRF_					0	0	0			REV__ENSG00000176136|ENST00000589410|MC5R	REV__ENSG00000176136|ENST00000589410|MC5R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.3346557617188	2	548.789661	1095.56477	-0.90371	-0.00049595	1.8209	0.00099927	0.91714	0.00050332	549.2907684661	29.141	0.3186	29.219	29.091	29.41	0.078344					16	7	3	0	0	0	0.024477	1	1736	1736		35.618	6.4687	1	61053	+		68055	26996	47766	47843	73853	73853					0.020809289022054145
RPFSGLPL	8	Unmodified	_RPFSGLPL_					0	0	0		nc|ENSG00000159873|Q8IWD4-4|CCDC117;nc|ENSG00000159873|Q8IWD4-3|CCDC117;ENSG00000159873|ENST00000249064|CCDC117	nc|ENSG00000159873|Q8IWD4-4|CCDC117	nc|ENSG00000159873|Q8IWD4-4|CCDC117	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7696228027344	2	443.760895	885.507237	-0.09762	-4.332E-05	-3.534	-0.0015683	-3.6316	-0.0016116	443.75919166684866	20.11	1.1108	20.005	19.411	20.522	-0.10477					31	22	2	0	0	0	0.027866	1	541	541		12.959	1.4482	1	77763			68056	6772	47767	47844	73854	73854					0.05990409968296717
RPFVNTQAP	9	Unmodified	_RPFVNTQAP_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2681884765625	2	515.277441	1028.54033	-0.77437	-0.00039902	-0.196	-0.00010099	-0.97037	-0.00050001	515.2767182905212	31.462	0.35993	31.531	31.366	31.726	0.068962					12	8	2	0	0	0	0.024495	1	2030	2030		26.693	1.1189	1	42137	+		68057	21880	47768	47845	73855	73855					0.02719992020342943
RPFVNTQAP	9	Unmodified	_RPFVNTQAP_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.277441	1028.54033	0.094729	4.8812E-05	-7.5199	-0.0038748	-7.4252	-0.003826	515.273344281097	31.942	0.72023	31.757	31.36	32.081	-0.18507	0.033364	-0.0013862	NaN	26.693	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102760	+		68058	21880	47768	47845							0.02719992020342943
RPFVNTQAP	9	Unmodified	_RPFVNTQAP_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.277441	1028.54033	-0.36796	-0.0001896	-7.5145	-0.003872	-7.8824	-0.0040616	515.273472390166	32.04	0.51012	31.882	31.569	32.079	-0.15772	0.1592	-0.0013805	NaN	26.693	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102280	+		68059	21880	47768	47845							0.02719992020342943
RPGAFLSIS	9	Unmodified	_RPGAFLSIS_					0	0	0		ENST00000264203.7_1_1:19665365-19665608:-|nuORF	ENST00000264203.7_1_1:19665365-19665608:-|nuORF	ENST00000264203.7_1_1:19665365-19665608:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.23614501953125	2	474.269084	946.523616	-0.5314	-0.00025203	1.7745	0.00084158	1.2431	0.00058955	474.27002407961527	29.609	0.36485	29.609	29.408	29.773	0					13	8	2	0	0	0	0.024487	1	1823	1823		31.955	5.1588	1	42743			68060	11554	47769	47846	73856	73856					0.048214911343848144
RPGAFPVS	8	Unmodified	_RPGAFPVS_					0	0	0		ENST00000430321.5_1_2:170821003-170871346:+|nuORF	ENST00000430321.5_1_2:170821003-170871346:+|nuORF	ENST00000430321.5_1_2:170821003-170871346:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2118835449219	2	415.729595	829.444637	-0.19963	-8.299E-05	-3.1703	-0.001318	-3.37	-0.001401	415.7288128461255	28.689	0.24996	28.684	28.582	28.832	-0.0042019					8	5	2	0	0	0	0.027866	1	1678	1678		12.207	3.9756	1	39860			68061	14165	47770	47847	73857	73857					0.023092639000992676
RPGAGVRLPI	10	Unmodified	_RPGAGVRLPI_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000475570.1_1_1:161172175-161173338:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.3240356445312	2	518.324725	1034.6349	-0.21581	-0.00011186	-0.52755	-0.00027344	-0.74336	-0.0003853	518.3244601169113	41.102	1.5936	41.102	40.728	42.322	0					125	45	5	0	0	0	0.71272	1	3693	3693		66.429	10.925	1	15158000			68062	6709	47771	47848	73858	73858					0.11896550562323682
RPGAKASH	8	Unmodified	_RPGAKASH_					0	0	0			REV__ENST00000560793.6_1_1:150938151-150938301:-|nuORF	REV__ENST00000560793.6_1_1:150938151-150938301:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.2306213378906	2	412.230294	822.446034	0.074438	3.0686E-05	0.64002	0.00026383	0.71445	0.00029452	412.23051145257693	27.319	2.4518	27.306	26.415	28.867	-0.012983					153	61	4	0	0	0	1.043	1	1507	1507		30.504	6.3009	1	6937900	+		68063	35157	47772	47849	73859	73859					0.02770897988852994
RPGAPLARAI	10	Unmodified	_RPGAPLARAI_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.3073425292969	2	511.3169	1020.61925	-0.59843	-0.00030599	0.18889	9.6584E-05	-0.40953	-0.0002094	511.3168862333682	22.409	1.1706	22.409	21.723	22.894	0					56	24	4	0	0	0	1.089	1	805	805		34.173	1.3601	1	529700	+		68064	27672	47773	47850	73860	73860					0.10976264045268636
RPGAPRVP	8	Unmodified	_RPGAPRVP_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	ENSG00000151846|ENST00000281589|PABPC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.2562255859375	2	425.256311	848.49807	0.2818	0.00011984	-0.10208	-4.3412E-05	0.17971	7.6423E-05	425.25616456688573	23.992	1.1277	24.068	23.647	24.775	0.076241					42	24	2	0	0	0	1.0574	1	968	968		26.796	0	1	1320800			68065	6236	47774	47851	73861	73861					0.06776061402615596
RPGAPTSLQT	10	Unmodified	_RPGAPTSLQT_					0	0	0		nc|ENSG00000153094|O43521-17|BCL2L11;nc|ENSG00000153094|O43521-13|BCL2L11;nc|ENSG00000153094|O43521-8|BCL2L11;nc|ENSG00000153094|O43521-4|BCL2L11;nc|ENSG00000153094|O43521-19|BCL2L11;nc|ENSG00000153094|O43521-14|BCL2L11;nc|ENSG00000153094|O43521-2|BCL2L11;nc|ENSG00000153094|O43521-10|BCL2L11;nc|ENSG00000153094|O43521-11|BCL2L11;nc|ENSG00000153094|O43521-5|BCL2L11;nc|ENSG00000153094|O43521-20|BCL2L11;nc|ENSG00000153094|O43521-3|BCL2L11;nc|ENSG00000153094|O43521-18|BCL2L11;nc|ENSG00000153094|O43521-7|BCL2L11;nc|ENSG00000153094|O43521-9|BCL2L11;nc|ENSG00000153094|O43521-16|BCL2L11;nc|ENSG00000153094|O43521-6|BCL2L11;nc|ENSG00000153094|O43521-15|BCL2L11;ENSG00000153094|ENST00000393256|BCL2L11;nc|ENSG00000153094|O43521-12|BCL2L11;BCL2L11-MERTK|1|fusion;BCL2L11-MERTK|3|fusion;BCL2L11-MERTK|2|fusion	nc|ENSG00000153094|O43521-17|BCL2L11;nc|ENSG00000153094|O43521-12|BCL2L11;BCL2L11-MERTK|1|fusion	BCL2L11-MERTK|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.82568359375	2	514.28018	1026.54581	-1.2227	-0.00062882	1.2872	0.000662	0.064522	3.3183E-05	514.2808286374551	39.701	1.0388	39.724	39.349	40.388	0.023727					64	28	4	0	0	0	0.03519	1	3445	3445		54.722	0	1	9324600			68066	18390;18389;182	47775	47852	73862	73862					0.033596708121422125
RPGARAVPPL	10	Unmodified	_RPGARAVPPL_					0	0	0		ENST00000247930.4_1_7:149128753-149129017:-|nuORF	ENST00000247930.4_1_7:149128753-149129017:-|nuORF	ENST00000247930.4_1_7:149128753-149129017:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.3164672851562	2	517.3169	1032.61925	-0.18688	-9.6677E-05	-0.33261	-0.00017207	-0.51949	-0.00026874	517.3165934052006	29.262	1.314	29.113	28.826	30.14	-0.14952					68	30	4	0	0	0	0.91051	1	1757	1757		53.351	0	1	2295600			68067	11330	47776	47853	73863	73863					0.10424264045263953
RPGARFLS	8	Unmodified	_RPGARFLS_					0	0	0			REV__ENST00000537606.5_1_2:27599658-27599817:+|nuORF	REV__ENST00000537606.5_1_2:27599658-27599817:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.77764892578125	2	452.261594	902.508634	0.057007	2.5782E-05	-1.3078	-0.00059146	-1.2508	-0.00056568	452.26087035570384	41.602	0.57256	41.471	41.181	41.753	-0.13159					38	15	3	0	0	0	0.027866	1	3692	3692		40.573	20.091	1	767490	+		68068	34702	47777	47854	73864	73864					0.05348044057052448
RPGCLFAL	8	Unmodified	_RPGCLFAL_					0	0	0			REV__ENSG00000132911|ENST00000255262|NMUR2	REV__ENSG00000132911|ENST00000255262|NMUR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.24700927734375	2	438.741648	875.468743	0.078603	3.4487E-05	2.1411	0.00093938	2.2197	0.00097387	438.74273856341864	26.608	0.66939	26.608	26.365	27.034	0					30	15	3	0	0	0	0.027866	1	1375	1375		37.028	22.364	1	127430	+		68069	23328	47778	47855	73865	73865					0.02602781062091708
RPGDGPVI	8	Unmodified	_RPGDGPVI_					0	0	0		ENST00000517609.5_1_8:124429070-124447771:+|nuORF;ENST00000519199.5_2_8:124429089-124447771:+|nuORF;nc|ENSG00000156795|Q96HA8-2|NTAQ1;ENST00000523551.1_1_8:124429070-124460295:+|nuORF;ENSG00000156795|ENST00000287387|NTAQ1	ENST00000517609.5_1_8:124429070-124447771:+|nuORF	ENST00000517609.5_1_8:124429070-124447771:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.7452087402344	2	405.727052	809.439552	1.5487	0.00062833	-0.87914	-0.00035669	0.66951	0.00027164	405.72656479708087	45.451	0.43692	45.494	45.279	45.716	0.043877					22	12	2	0	0	0	0.027866	1	4348	4348		79.939	14.136	1	183680			68070	6549	47779	47856	73866	73866					0.02720960037470377
RPGDRAKAL	9	Unmodified	_RPGDRAKAL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2908020019531	2	492.290882	982.567212	-0.65666	-0.00032327	0.25778	0.0001269	-0.39888	-0.00019637	492.29093482962963	20.299	1.0193	20.299	19.782	20.801	0					38	20	4	0	0	0	0.39228	1	521	521		66.429	9.7082	1	680660			68071	5587	47780	47857	73867	73867					0.07523100631499346
RPGDRAKAL	9	Unmodified	_RPGDRAKAL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2909851074219	2	492.290882	982.567212	-0.45799	-0.00022546	-0.021114	-1.0394E-05	-0.4791	-0.00023586	492.29085079942007	20.553	0.67523	20.449	20.03	20.705	-0.10477					18	13	2	0	0	0	0.16468	1	537	537		96.19	27.404	1	775280			68072	5587	47780	47857	73868	73868					0.07523100631499346
RPGDRAKAL	9	Unmodified	_RPGDRAKAL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2908020019531	2	492.290882	982.567212	1.086	0.00053464	-1.2923	-0.00063619	-0.20629	-0.00010155	492.29015047205445	20.371	0.98469	20.44	20.021	21.005	0.068901					40	19	4	0	0	0	0.29158	2	490	482;490		76.774	4.8664	1	681090			68073	5587	47780	47857	73869;73870	73870					0.07523100631499346
RPGECGARGPG	11	Unmodified	_RPGECGARGPG_					0	0	0		ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.8223266601562	2	528.753807	1055.49306	-0.88653	-0.00046876	-4.205	-0.0022234	-5.0915	-0.0026922	528.7514525376234	32.677	0.36943	32.689	32.523	32.893	0.011799					16	9	2	0	0	0	0.024785	1	2272	2272		30.318	2.4355	1	139260			68074	13534	47781	47858	73871	73871					-0.03246610522296578
RPGEQAPE	8	Unmodified	_RPGEQAPE_					0	0	0		ENSG00000125998|ENST00000374408|FAM83C	ENSG00000125998|ENST00000374408|FAM83C	ENSG00000125998|ENST00000374408|FAM83C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2591552734375	2	442.217049	882.419545	-0.23908	-0.00010572	-0.084048	-3.7168E-05	-0.32313	-0.00014289	442.2162524184457	27.229	0.21354	27.229	27.109	27.323	0					6	5	2	0	0	0	0.027866	1	1447	1447		51.335	5.3835	1	31201			68075	4172	47782	47859	73872	73872					-0.02636835693147077
RPGEVLGLVGT	11	Unmodified	_RPGEVLGLVGT_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.L313Wfs*10|1|0.3|ENSG00000164163|chr4:145119941-145119941|T/-|frameshift_variant	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3181762695312	2	549.319306	1096.62406	-0.43544	-0.0002392	-2.1307	-0.0011704	-2.5661	-0.0014096	549.3180052231875	99.575	0.68658	99.585	99.223	99.91	0.010239					46	15	4	0	0	0	1.0429	1	12688	12688		27.047	0.3544	1	445600			68076	7228	47783	47860	73873	73873					0.0796110339738334
RPGEVLGLVGT	11	Unmodified	_RPGEVLGLVGT_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.L313Wfs*10|1|0.3|ENSG00000164163|chr4:145119941-145119941|T/-|frameshift_variant	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.3173828125	2	549.319306	1096.62406	0.4694	0.00025785	-2.9677	-0.0016302	-2.4983	-0.0013724	549.3175615102906	99.732	0.62275	99.597	99.249	99.871	-0.13526					38	14	4	0	0	0	1.0557	1	12383	12383		23.523	1.8204	1	405160			68077	7228	47783	47860	73874	73874					0.0796110339738334
RPGEVLGLVGT	11	Unmodified	_RPGEVLGLVGT_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ABCE1|p.L313Wfs*10|1|0.3|ENSG00000164163|chr4:145119941-145119941|T/-|frameshift_variant	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3189086914062	2	549.319306	1096.62406	0.75373	0.00041404	-3.311	-0.0018188	-2.5573	-0.0014048	549.3174448773781	99.74	0.56215	99.616	99.234	99.796	-0.12458					46	14	4	0	0	0	1.0183	1	12391	12391		32.751	1.1163	1	437000			68078	7228	47783	47860	73875	73875					0.0796110339738334
RPGFKLEYQDL	11	Unmodified	_RPGFKLEYQDL_					0	0	0		nc|ENSG00000121904|Q7Z408|CSMD2	nc|ENSG00000121904|Q7Z408|CSMD2	nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.25860595703125	3	455.910227	1364.70885	0.18174	8.2859E-05	0.53435	0.00024362	0.7161	0.00032648	456.245698812969	33.974	0.3908	33.974	33.777	34.168	0					12	9	2	0	0	0	0.024734	1	2505	2505		11.932	0	1	45941			68079	18226	47784	47861	73876	73876					0.04108429143320791
RPGFRVCYI	9	Unmodified	_RPGFRVCYI_					0	0	0		ENSG00000164185|ENST00000296600|ZNF474	ENSG00000164185|ENST00000296600|ZNF474	ENSG00000164185|ENST00000296600|ZNF474	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.7994995117188	2	555.797486	1109.58042	0.27641	0.00015363	1.1325	0.00062945	1.4089	0.00078308	555.797930864757	40.853	1.0635	40.853	40.551	41.615	0					56	29	2	0	0	0	0.70186	1	3640	3640		45.952	7.1983	1	3770000			68080	7235	47785	47862	73877	73877					0.03001215419226355
RPGGAKAEAK	10	Unmodified	_RPGGAKAEAK_					0	0	0			REV__ENST00000427153.1_1_7:73149574-73149814:+|nuORF	REV__ENST00000427153.1_1_7:73149574-73149814:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7827453613281	2	492.78289	983.551228	-0.22995	-0.00011332	0.024345	1.1997E-05	-0.20561	-0.00010132	492.7829278563097	20.049	0.68623	20.049	19.782	20.468	0					30	13	3	0	0	0	0.72729	1	498	498		65.465	6.6834	1	590390	+		68081	32285	47786	47863	73878	73878					0.05879394394605697
RPGGAQGQAI	10	Unmodified	_RPGGAQGQAI_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7592468261719	2	477.759415	953.504277	0.32379	0.00015469	-0.89756	-0.00042882	-0.57377	-0.00027412	477.7588476592407	23.101	1.1914	23.101	22.803	23.994	0					44	27	3	0	0	0	0.941	1	872	872		51.335	1.8939	1	569090			68082	3857	47787	47864	73879	73879					0.02566534843469981
RPGGGVLWV	9	Unmodified	_RPGGGVLWV_					0	0	0		ENST00000482171.5_1_2:130914007-130915206:-|nuORF	ENST00000482171.5_1_2:130914007-130915206:-|nuORF	ENST00000482171.5_1_2:130914007-130915206:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7879333496094	2	470.771794	939.529036	-0.063404	-2.9849E-05	-3.1226	-0.00147	-3.186	-0.0014999	470.7702486410479	23.917	0.81803	23.917	23.523	24.341	0					22	18	2	0	0	0	0.024466	1	971	971		18.324	3.6603	1	148290			68083	15249	47788	47865	73880	73880					0.05685214716845621
RPGGLDDR	8	Unmodified	_RPGGLDDR_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;BCORL1|p.P1681Qfs*20|1|0.89|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant;ENSG00000085185|ENST00000540052|BCORL1;nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.25897216796875	2	443.230491	884.446428	-0.55296	-0.00024509	-0.97979	-0.00043427	-1.5327	-0.00067936	443.2296577488613	23.768	0.56037	23.707	23.47	24.03	-0.060862					15	12	2	0	0	0	0.027866	1	928	928		29.15	11.785	1	45843			68084	183	47789	47866	73881	73881					-0.00041727081952558365
RPGGLGAAAA	10	Unmodified	_RPGGLGAAAA_					0	0	0		ENST00000569706.5_1_16:718199-718313:+|nuORF	ENST00000569706.5_1_16:718199-718313:+|nuORF	ENST00000569706.5_1_16:718199-718313:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7381896972656	2	420.737951	839.46135	-0.347	-0.000146	0.98873	0.00041599	0.64172	0.00027	420.73828310758734	23.34	1.1792	23.34	22.987	24.166	0					65	27	4	0	0	0	0.62679	1	918	918		73.975	2.679	1	3391000			68085	17008	47790	47867	73882	73882					0.03519764786028645
RPGGLGAAAA	10	Unmodified	_RPGGLGAAAA_					0	0	0		ENST00000569706.5_1_16:718199-718313:+|nuORF	ENST00000569706.5_1_16:718199-718313:+|nuORF	ENST00000569706.5_1_16:718199-718313:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.738037109375	2	420.737951	839.46135	-0.48906	-0.00020577	1.2308	0.00051783	0.7417	0.00031206	420.7383850676549	23.32	1.3138	23.259	22.981	24.295	-0.060862					62	30	4	0	0	0	0.91051	1	909	909		53.351	0	1	3425100			68086	17008	47790	47867	73883	73883					0.03519764786028645
RPGGLWGI	8	Unmodified	_RPGGLWGI_					0	0	0			REV__ENST00000509848.5_3_5:72922113-73045687:+|nuORF	REV__ENST00000509848.5_3_5:72922113-73045687:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.25628662109375	2	428.245412	854.476272	-0.001406	-6.0212E-07	-2.2062	-0.0009448	-2.2076	-0.0009454	428.24472502328354	44.522	0.23705	44.559	44.375	44.612	0.0369					9	6	2	0	0	0	0.027866	1	4204	4204		50.025	0	1	106540	+		68087	34091	47791	47868	73884	73884					0.043212566540205444
RPGGPATVP	9	Unmodified	_RPGGPATVP_					0	0	0			REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.240478515625	2	426.240327	850.466101	-0.33551	-0.00014301	0.74245	0.00031646	0.40695	0.00017346	426.2404891242026	31.388	1.592	31.4	30.668	32.26	0.011799					98	38	4	0	0	0	0.59099	1	2093	2093		53.351	1.0523	1	1266700	+		68088	29435	47792	47869	73885	73885					0.03488648928794191
RPGGPATVP	9	Unmodified	_RPGGPATVP_					0	0	0			REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	426.240327	850.466101	-0.88192	-0.00037591	1.2988	0.0005536	0.41688	0.00017769	426.2407344468634	31.45	1.9098	31.45	30.508	32.418	0	0.10756	0.00040037	NaN	53.351	114	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1228500	+		68089	29435	47792	47869							0.03488648928794191
RPGGPATVP	9	Unmodified	_RPGGPATVP_					0	0	0			REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	REV__ENST00000237455.4_1_2:86849944-86850244:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	426.240327	850.466101	-0.33551	-0.00014301	0.74245	0.00031646	0.40695	0.00017346	426.2404891242026	31.388	1.592	31.4	30.668	32.26	0.011799	0.057241	-7.3902E-05	NaN	53.351	98	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266700	+		68090	29435	47792	47869							0.03488648928794191
RPGGVLEKPH	10	Unmodified	_RPGGVLEKPH_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3117065429688	2	545.311815	1088.60908	-0.9513	-0.00051875	0.82763	0.00045132	-0.12366	-6.7435E-05	545.3121133723938	22.315	0.653	22.315	22.012	22.665	0					39	13	4	0	0	0	0.80817	1	771	771		60.118	10.677	1	546060			68091	10022	47793	47870	73886	73886					0.06831656320036927
RPGHGRHPL	9	Unmodified	_RPGHGRHPL_					0	0	0			REV__ENST00000504875.5_1_5:149460553-149466039:-|nuORF	REV__ENST00000504875.5_1_5:149460553-149466039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.791015625	2	513.788841	1025.56313	-0.8553	-0.00043944	4.3221	0.0022206	3.4668	0.0017812	513.7907870235442	21.793	0.80308	21.793	21.441	22.245	0					43	16	4	0	0	0	0.59099	1	701	701		53.351	5.4358	1	2030300	+		68092	33993	47794	47871	73887	73887					0.05137055928457812
RPGHGRHPL	9	Unmodified	_RPGHGRHPL_					0	0	0			REV__ENST00000504875.5_1_5:149460553-149466039:-|nuORF	REV__ENST00000504875.5_1_5:149460553-149466039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7921752929688	2	513.788841	1025.56313	-0.42972	-0.00022078	3.1644	0.0016258	2.7347	0.0014051	513.79049546212	21.846	0.7565	21.756	21.453	22.209	-0.089573					43	15	4	0	0	0	0.72875	1	689	689		44.117	6.3053	1	1844800	+		68093	33993	47794	47871	73888	73888					0.05137055928457812
RPGHGRHPL	9	Unmodified	_RPGHGRHPL_					0	0	0			REV__ENST00000504875.5_1_5:149460553-149466039:-|nuORF	REV__ENST00000504875.5_1_5:149460553-149466039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7904052734375	2	513.788841	1025.56313	-1.0273	-0.00052781	4.4285	0.0022753	3.4012	0.0017475	513.790824320282	21.683	0.91604	21.754	21.254	22.17	0.071487					48	18	5	0	0	0	0.72875	2	652	642;652		44.117	5.3107	1	2193300	+		68094	33993	47794	47871	73889;73890	73890					0.05137055928457812
RPGIEGSL	8	Unmodified	_RPGIEGSL_					0	0	0			REV__ENSG00000123165|ENST00000371124|ACTRT1	REV__ENSG00000123165|ENST00000371124|ACTRT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2118835449219	2	414.732335	827.450116	-0.13646	-5.6596E-05	0.96903	0.00040189	0.83257	0.00034529	414.7323036344753	28.724	0.46165	28.719	28.458	28.92	-0.0042019					14	10	2	0	0	0	0.027866	1	1678	1678		16.473	0	1	54756	+		68095	22682	47795	47872	73891	73891					0.02948942691909906
RPGKRIVG	8	Unmodified	_RPGKRIVG_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENST00000575323.1_1_16:3580476-3582910:+|nuORF	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7850646972656	2	441.785236	881.555919	0.26686	0.00011789	0.17752	7.8426E-05	0.44438	0.00019632	441.78514086300294	18.908	0.63834	18.779	18.403	19.042	-0.12906					28	12	3	0	0	0	1.0133	1	340	340		35.201	1.6851	1	104770			68096	2496	47796	47873	73892	73892					0.11040323328040813
RPGKVKIQKLL	11	Unmodified	_RPGKVKIQKLL_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2643127441406	3	427.290602	1278.84998	-0.072968	-3.1179E-05	1.6149	0.00069002	1.5419	0.00065884	427.62548094589897	54.069	0.17012	53.922	53.784	53.954	-0.14723					7	4	2	0	0	0	0.024851	1	5857	5857		6.001	2.7897	1	176160	+		68097	24886	47797	47874	73893	73893					0.2217047230726621
RPGKVKIQKLL	11	Unmodified	_RPGKVKIQKLL_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2651672363281	3	427.290602	1278.84998	0.26936	0.0001151	-3.5458	-0.0015151	-3.2764	-0.0014	427.28918199394474	53.825	0.26786	53.92	53.736	54.004	0.095669					14	7	3	0	0	0	0.024856	1	5782	5782		9.2118	0	1	197330	+		68098	24886	47797	47874	73894	73894					0.2217047230726621
RPGLEFIAGNP	11	Unmodified	_RPGLEFIAGNP_					0	0	0			REV__ENST00000490768.1_1_1:161136541-161137045:+|nuORF	REV__ENST00000490768.1_1_1:161136541-161137045:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.8187255859375	2	585.81693	1169.61931	1.3018	0.00076263	1.3841	0.00081083	2.6859	0.0015735	585.8177074786114	19.038	3.0515	18.805	18.483	21.534	-0.23345					108	61	4	0	0	0	1.0344	1	409	409		29.17	4.6509	1	956800	+		68099	24214	47798	47875	73895	73895					0.04128219254630494
RPGLPQPPP	9	Unmodified	_RPGLPQPPP_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7738952636719	2	479.777077	957.5396	-0.78349	-0.0003759	-2.4643	-0.0011823	-3.2478	-0.0015582	479.7756317584072	22.74	0.58617	22.814	22.607	23.193	0.073954					27	12	3	0	0	0	0.80658	1	794	794		38.806	5.2906	1	429590			68100	3864	47799	47876	73896	73896					0.05913197371273782
RPGLPQPPP	9	Unmodified	_RPGLPQPPP_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.777077	957.5396	0.11324	5.433E-05	-3.2895	-0.0015782	-3.1763	-0.0015239	479.77535027128	22.871	0.59294	22.871	22.572	23.165	0	0.041981	0.00039061	NaN	38.806	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378180			68101	3864	47799	47876							0.05913197371273782
RPGLPQPPP	9	Unmodified	_RPGLPQPPP_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.777077	957.5396	-0.12775	-6.1293E-05	-4.4102	-0.0021159	-4.538	-0.0021772	479.77551916734984	22.878	0.50072	22.816	22.567	23.068	-0.062044	-0.012458	-0.00068476	NaN	38.806	35	10	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511190			68102	3864	47799	47876							0.05913197371273782
RPGLPQPPP	9	Unmodified	_RPGLPQPPP_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.777077	957.5396	0.69273	0.00033236	-4.8787	-0.0023407	-4.186	-0.0020083	479.77469124466603	22.971	0.37436	22.769	22.64	23.014	-0.20193	-0.060019	-0.0011343	NaN	38.806	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24154			68103	3864	47799	47876							0.05913197371273782
RPGLPQPPP	9	Unmodified	_RPGLPQPPP_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.777077	957.5396	1.4874	0.00071364	-6.0073	-0.0028822	-4.5198	-0.0021685	479.7744575309024	23.065	0.23056	22.874	22.758	22.988	-0.19117	0.044946	-0.0022172	NaN	38.806	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27807			68104	3864	47799	47876							0.05913197371273782
RPGLRVAEIGR	11	Unmodified	_RPGLRVAEIGR_					0	0	0		ENST00000478793.1_1_3:113666916-113667543:+|nuORF;ENST00000498275.5_1_3:113666916-113667668:+|nuORF	ENST00000478793.1_1_3:113666916-113667543:+|nuORF	ENST00000478793.1_1_3:113666916-113667543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	612.26416015625	2	612.370195	1222.72584	-1.9215	-0.0011767	2.552	0.0015628	0.63049	0.0003861	612.3716405230083	51.852	0.47467	51.583	51.321	51.795	-0.26903					27	12	3	0	0	0	0.024808	1	5297	5297		12.812	0	1	281290			68105	15155	47800	47877	73897	73897					0.12338394539779074
RPGLTKCPV	9	Unmodified	_RPGLTKCPV_					0	0	0			REV__ENST00000392144.5_1_19:38145708-38146127:-|nuORF	REV__ENST00000392144.5_1_19:38145708-38146127:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.78009033203125	2	485.778762	969.542971	-0.71827	-0.00034892	-3.97	-0.0019285	-4.6883	-0.0022775	485.77750079398936	25.713	1.042	25.679	25.351	26.393	-0.034395					51	24	4	0	0	0	0.56934	1	1264	1264		54.776	1.8396	1	2338700	+		68106	31596	47801	47878	73898	73898					0.05698124153616391
RPGMLLPY	8	Unmodified	_RPGMLLPY_					0	0	0			REV__ENSG00000204694|ENST00000377149|OR11A1	REV__ENSG00000204694|ENST00000377149|OR11A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.75079345703125	2	473.762581	945.510608	0.054919	2.6019E-05	3.3837	0.0016031	3.4386	0.0016291	473.76429963871044	28.19	0.82426	28.271	27.832	28.657	0.080812					50	19	4	0	0	0	0.027866	1	1543	1543		44.531	11.015	1	1278900	+		68107	28633	47802	47879	73899	73899					0.03567336750620598
RPGNILLQ	8	Unmodified	_RPGNILLQ_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.76654052734375	2	455.777077	909.5396	-0.5944	-0.00027091	0.65577	0.00029888	0.06137	2.7971E-05	455.7773017130572	23.746	1.143	23.685	23.152	24.295	-0.060862					59	26	3	0	0	0	0.027866	1	890	890		40.573	0	1	278340			68108	2270	47803	47880	73900	73900					0.08121197371269773
RPGPALLF	8	Unmodified	_RPGPALLF_					0	0	0			REV__ENSG00000102302|ENST00000375135|FGD1	REV__ENSG00000102302|ENST00000375135|FGD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2724304199219	2	435.763438	869.512323	-0.29828	-0.00012998	-4.0816	-0.0017786	-4.3799	-0.0019086	435.7615240470349	34.09	0.756	34.141	33.884	34.64	0.050255					43	18	3	0	0	0	0.027866	1	2425	2425		23.037	0	1	1423800	+		68109	21299	47804	47881	73901	73901					0.07234713830905548
RPGPCRNL	8	Unmodified	_RPGPCRNL_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.25860595703125	2	456.745254	911.475954	-0.078695	-3.5943E-05	-4.2494	-0.0019409	-4.3281	-0.0019768	456.7433470457995	33.469	1.2751	33.469	33.096	34.371	0					71	33	3	0	0	0	0.027866	1	2505	2505		30.504	0	1	1300800			68110	4432	47805	47882	73902	73902					0.01667513662539477
RPGPGKKEV	9	Unmodified	_RPGPGKKEV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2878112792969	2	484.287808	966.561064	3.4523	0.0016719	-3.283	-0.0015899	0.16933	8.2003E-05	484.2859885122955	17.639	0.73722	17.639	17.399	18.136	0					20	14	2	0	0	0	0.48817	2	200	185;200		60.118	24.918	1	171500			68111	7735	47806	47883	73903;73904	73904					0.07644582399996125
RPGPGKKEV	9	Unmodified	_RPGPGKKEV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2878723144531	2	484.287808	966.561064	0.30763	0.00014898	-0.42917	-0.00020784	-0.12153	-5.8858E-05	484.2874075531193	17.834	0.57806	17.692	17.368	17.946	-0.14278					19	11	2	0	0	0	0.67687	2	212	202;212		47.657	1.7054	1	167470			68112	7735	47806	47883	73905;73906	73906					0.07644582399996125
RPGPGKKEV	9	Unmodified	_RPGPGKKEV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	484.287808	966.561064	1.2067	0.0005844	-1.1083	-0.00053672	0.098444	4.7675E-05	484.28714588414175	17.887	0.54786	17.733	17.408	17.955	-0.15403	0.044961	0.00058371	NaN	60.118	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108110			68113	7735	47806	47883							0.07644582399996125
RPGPGRLGG	9	Unmodified	_RPGPGRLGG_					0	0	0			REV__ENST00000216923.4_1_20:50808259-50808472:-|nuORF	REV__ENST00000216923.4_1_20:50808259-50808472:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.7513427734375	2	433.751393	865.488233	-0.11927	-5.1733E-05	0.42229	0.00018317	0.30302	0.00013143	433.7514853429107	20.01	1.9787	19.905	19.066	21.045	-0.10477					82	40	3	0	0	0	0.67308	1	435	435		47.916	3.3845	1	1132100	+		68114	29323	47807	47884	73907	73907					0.05010873397236537
RPGPGRPLPE	10	Unmodified	_RPGPGRPLPE_					0	0	0		ENST00000491491.1_1_13:77900653-77900983:-|nuORF;ENST00000357337.10_1_13:77900650-77901123:-|nuORF	ENST00000491491.1_1_13:77900653-77900983:-|nuORF	ENST00000491491.1_1_13:77900653-77900983:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3043212890625	2	538.30399	1074.59343	-0.4105	-0.00022097	3.3806	0.0018198	2.9701	0.0015988	538.3057829149901	18.753	0.4407	18.621	18.302	18.743	-0.13147					16	8	3	0	0	0	1.0236	1	321	321		42.864	2.2917	1	89652			68115	15461	47808	47885	73908	73908					0.05911369802993249
RPGPPLKGK	9	Unmodified	_RPGPPLKGK_					0	0	0			REV__nc|ENSG00000197446|P24903-2|CYP2F1	REV__nc|ENSG00000197446|P24903-2|CYP2F1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.3004150390625	2	475.300719	948.586885	-0.53596	-0.00025474	0.28601	0.00013594	-0.24995	-0.0001188	475.3007751420258	39.842	1.6963	39.866	39.135	40.831	0.023727					113	47	4	0	0	0	0.83071	1	3374	3374		37.159	1.5408	1	8639100	+		68116	28305	47809	47886	73909	73909					0.11053476642280202
RPGPPPPPP	9	Unmodified	_RPGPPPPPP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2582702636719	2	456.25852	910.502486	-0.074755	-3.4108E-05	-0.37108	-0.00016931	-0.44584	-0.00020342	456.2583876450436	32.48	3.75	32.48	31.343	35.093	0					278	97	3	0	0	0	0.29104	6	2202	2190;2202;2249;2273;2493;2505		76.847	0	1	17591000	+		68117	29160	47810	47887	73910;73911;73912;73913;73914;73915	73911					0.04365525825505756
RPGPPPPPP	9	Unmodified	_RPGPPPPPP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.25830078125	2	456.25852	910.502486	-0.36043	-0.00016445	-0.15612	-7.123E-05	-0.51655	-0.00023568	456.25850296783176	32.466	3.7606	32.477	31.214	34.975	0.011795					259	97	3	0	0	0	0.29104	6	2289	2158;2289;2325;2362;2387;2463		76.847	0	1	19003000	+		68118	29160	47810	47887	73916;73917;73918;73919;73920;73921	73917					0.04365525825505756
RPGPPPPPP	9	Unmodified	_RPGPPPPPP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2583923339844	2	456.25852	910.502486	0.10015	4.5696E-05	-0.56547	-0.000258	-0.46532	-0.0002123	456.258324860341	32.29	4.0779	32.353	30.991	35.069	0.062885					273	104	3	0	0	0	0.20304	3	2116	2116;2311;2335		88.643	0	1	17962000	+		68119	29160	47810	47887	73922;73923;73924	73922					0.04365525825505756
RPGPPWSP	8	Unmodified	_RPGPPWSP_					0	0	0		ENST00000468964.1_1_10:135084331-135084895:-|nuORF	ENST00000468964.1_1_10:135084331-135084895:-|nuORF	ENST00000468964.1_1_10:135084331-135084895:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.20819091796875	2	447.235045	892.455536	0.44392	0.00019853	-1.304	-0.00058319	-0.86007	-0.00038465	447.23466304317776	21.647	0.38232	21.47	21.209	21.591	-0.17721					10	7	2	0	0	0	0.027866	1	691	691		40.573	29.062	1	17379			68120	14891	47811	47888	73925	73925					0.005006662743653578
RPGPRLQVM	9	Unmodified	_RPGPRLQVM_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.3059692382812	2	527.302936	1052.59132	0.95797	0.00050514	2.7741	0.0014628	3.7321	0.001968	527.304365478722	98.029	1.3703	97.904	97.417	98.787	-0.12414					55	32	3	0	0	0	0.80658	1	12162	12162		38.806	1.647	1	608280	+		68121	24691	47812	47889	73926	73926					0.06712617793527897
RPGQQTSWVEL	11	Unmodified	_RPGQQTSWVEL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.25372314453125	3	434.226326	1299.65715	-0.84478	-0.00036683	4.0684	0.0017666	3.2236	0.0013998	434.2282706389867	28.861	0.49403	28.861	28.655	29.149	0					19	11	2	0	0	0	0.024739	1	1706	1706		35.178	0.026198	1	40197	+		68122	22427	47813	47890	73927	73927					0.019306854494288928
RPGRDAPHFLD	11	Unmodified	_RPGRDAPHFLD_					0	0	0		SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|66|2|anti-sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|82|3|anti-sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|76|3|anti-sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|56|2|anti-sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|91|3|anti-sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|39|2|anti-sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|32|1|anti-sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|81|3|anti-sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|53|1|anti-sense;SVA_F_dup805|chr16:56739964-56741004:-|2.04439344331472|0.1539008476170439|3.73|521.0|36|2|anti-sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|53|1|anti-sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|87|3|anti-sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|49|1|anti-sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|60|2|anti-sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|59|1|anti-sense;SVA_C_dup144|chr6:35339726-35340993:+|1.61883066272495|0.09265229922661|4.13|519.0|36|1|anti-sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|73|3|anti-sense;SVA_F_dup380|chr7:55220078-55221168:-|1.1418226181010516|0.0697212815142608|4.03|498.0|29|1|anti-sense;SVA_F_dup406|chr7:100741755-100742900:-|1.232200985175746|0.0448666814421612|4.78|507.0|29|1|anti-sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|88|3|anti-sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|71|2|anti-sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|91|3|anti-sense;SVA_F_dup383|chr7:64855550-64856682:+|1.0847584123571563|0.3512657999869693|1.63|519.0|29|1|anti-sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|52|1|anti-sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|52|1|anti-sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|61|2|anti-sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|47|1|anti-sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|67|2|anti-sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|49|2|anti-sense;SVA_D_dup577|chr7:26261274-26263036:+|1.7844028900279014|0.0931002162136576|4.26|505.0|56|1|anti-sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|48|1|anti-sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|52|1|anti-sense;SVA_D_dup578|chr7:27044123-27045165:+|3.4573835482270727|0.215960987132471|4.0|519.0|25|1|anti-sense;SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|56|2|anti-sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|75|3|anti-sense;SVA_A_dup46|chr1:153582339-153583909:+|2.031148181261908|0.1339009560295861|3.92|521.0|55|2|anti-sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|56|1|anti-sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|43|1|anti-sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|55|2|anti-sense;SVA_D_dup1441|chr22:29857589-29859020:-|4.08217038432621|0.1555090891272688|4.71|518.0|37|1|anti-sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|49|2|anti-sense;SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|58|3|anti-sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|62|1|anti-sense;SVA_F_dup909|chr19:40117193-40118408:+|2.477742946646662|0.2301661439299303|3.43|519.0|32|1|anti-sense;SVA_D_dup969|chr12:52409038-52410702:+|1.8874555388437075|0.0422788858292054|5.48|516.0|61|2|anti-sense;SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|44|3|anti-sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|73|3|anti-sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|51|1|anti-sense;SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|24|1|anti-sense	SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|66|2|anti-sense;SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|24|1|anti-sense	SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|24|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7135925292969	3	427.554666	1279.64217	0.045387	1.9405E-05	2.2904	0.00097928	2.3358	0.00099868	427.5557504900572	31.087	0.61621	31.155	30.829	31.445	0.06896					27	14	3	0	0	0	0.024723	1	1994	1994		11.455	0	1	77797			68123	38018;38033	47814	47891	73928	73928					0.013532383720757934
RPGRDSLRG	9	Unmodified	_RPGRDSLRG_					0	0	0			REV__ENST00000541050.5_1_12:109124417-109124600:-|nuORF	REV__ENST00000541050.5_1_12:109124417-109124600:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2834167480469	2	507.283589	1012.55262	0.06711	3.4044E-05	-0.53987	-0.00027387	-0.47276	-0.00023983	507.28339323117126	18.508	1.1808	18.376	18.105	19.286	-0.13147					54	23	5	0	0	0	0.39228	1	277	277		66.429	9.7082	1	2784200	+		68124	34763	47815	47892	73929	73929					0.046850284833681144
RPGRGGRGEA	10	Unmodified	_RPGRGGRGEA_					0	0	0			REV__ENST00000578067.5_1_17:61777101-61777332:-|nuORF	REV__ENST00000578067.5_1_17:61777101-61777332:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.77154541015625	2	506.773388	1011.53222	-0.55085	-0.00027916	-3.6809	-0.0018654	-4.2317	-0.0021445	506.77141411605925	20.574	1.064	20.47	19.981	21.045	-0.10477					54	21	3	0	0	0	0.98754	1	539	539		47.657	0	1	533810	+		68125	35486	47816	47893	73930	73930					0.026918578235722634
RPGRHAVCIS	10	Unmodified	_RPGRHAVCIS_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2952270507812	2	548.295642	1094.57673	1.3792	0.00075621	-2.2284	-0.0012218	-0.84925	-0.00046564	548.2945708902448	19.755	1.8583	19.821	19.538	21.396	0.066195					101	37	5	0	0	0	0.88896	1	406	406		54.776	10.66	1	5896600	+		68126	36591	47817	47894	73931	73931					0.03322545645391983
RPGRLARPH	9	Unmodified	_RPGRLARPH_					0	0	0			REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2774047851562	2	530.317766	1058.62098	-1.0833	-0.00057447	-0.79065	-0.0004193	-1.8739	-0.00099376	530.3171341448152	24.25	0.30533	24.25	24.08	24.385	0					10	6	2	0	0	0	0.024535	1	1022	1022		18.324	0.95945	1	38907	+		68127	35781	47818	47895	73932	73932					0.0940131785387166
RPGRLARPH	9	Unmodified	_RPGRLARPH_					0	0	0			REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.317766	1058.62098	-1.3767	-0.00073007	-0.44779	-0.00023747	-1.8244	-0.00096754	530.3174082904227	24.305	0.35381	24.258	24.088	24.442	-0.047146	-0.014635	0.00067633	NaN	12.207	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45318	+		68128	35781	47818	47895							0.0940131785387166
RPGRLARPH	9	Unmodified	_RPGRLARPH_					0	0	0			REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.317766	1058.62098	0.013299	7.0524E-06	-1.8702	-0.00099179	-1.8569	-0.00098474	530.3167657814287	24.231	0.31705	24.309	24.138	24.455	0.078344	0.036739	-0.00083232	NaN	12.207	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49566	+		68129	35781	47818	47895							0.0940131785387166
RPGRPAWRLPP	11	Unmodified	_RPGRPAWRLPP_					0	0	0		ENST00000330915.7_1_19:8399689-8399767:-|nuORF	ENST00000330915.7_1_19:8399689-8399767:-|nuORF	ENST00000330915.7_1_19:8399689-8399767:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.28753662109375	3	434.922912	1301.74691	-0.12597	-5.4788E-05	3.7726	0.0016408	3.6466	0.001586	435.2591558298916	25.819	0.15635	25.648	25.542	25.698	-0.17078					5	3	2	0	0	0	0.024736	1	1247	1247		19.263	0	1	73892			68130	12336	47819	47896	73933	73933					0.10810404639300941
RPGRPPPPP	9	Unmodified	_RPGRPPPPP_					0	0	0			REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7793273925781	2	485.782693	969.550834	-0.6565	-0.00031892	-2.2619	-0.0010988	-2.9184	-0.0014177	485.7813482228107	25.848	0.79434	25.848	25.779	26.573	0					41	18	3	0	0	0	0.20304	1	1266	1266		88.643	0	1	1456200	+		68131	32429	47820	47897	73934	73934					0.0648401946540389
RPGRPPPPP	9	Unmodified	_RPGRPPPPP_					0	0	0			REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7773132324219	2	485.782693	969.550834	-0.23433	-0.00011383	-1.8593	-0.00090324	-2.0937	-0.0010171	485.78148068379636	25.733	0.83652	25.813	25.749	26.585	0.08009					41	19	3	0	0	0	0.29104	1	1194	1194		76.847	15.875	1	1427100	+		68132	32429	47820	47897	73935	73935					0.0648401946540389
RPGRPPPPP	9	Unmodified	_RPGRPPPPP_					0	0	0			REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	485.782693	969.550834	-0.23433	-0.00011383	-1.8593	-0.00090324	-2.0937	-0.0010171	485.78148068379636	25.733	0.83652	25.813	25.749	26.585	0.08009	-0.017648	0.00012818	NaN	88.643	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1427100	+		68133	32429	47820	47897							0.0648401946540389
RPGRPVPT	8	Unmodified	_RPGRPVPT_					0	0	0			REV__ENST00000403534.7_1_19:45251011-45251212:+|nuORF	REV__ENST00000403534.7_1_19:45251011-45251212:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	440.2616882324219	2	440.261594	878.508634	0.55027	0.00024226	-0.18725	-8.244E-05	0.36302	0.00015982	440.2613616965321	19.581	1.0064	19.581	19.268	20.274	0					56	20	4	0	0	0	0.68535	1	445	445		68.485	0	1	1056200	+		68134	31892	47821	47898	73936	73936					0.06452044057027706
RPGRPVPT	8	Unmodified	_RPGRPVPT_					0	0	0			REV__ENST00000403534.7_1_19:45251011-45251212:+|nuORF	REV__ENST00000403534.7_1_19:45251011-45251212:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	440.261594	878.508634	0.97971	0.00043133	-4.2217	-0.0018586	-3.242	-0.0014273	440.2611328447913	20.12	0.58014	19.92	19.701	20.282	-0.2001	0.13584	-0.0028232	NaN	68.485	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54217	+		68135	31892	47821	47898							0.06452044057027706
RPGRPVPT	8	Unmodified	_RPGRPVPT_					0	0	0			REV__ENST00000403534.7_1_19:45251011-45251212:+|nuORF	REV__ENST00000403534.7_1_19:45251011-45251212:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	440.261594	878.508634	0.81088	0.000357	-1.737	-0.00076474	-0.92614	-0.00040774	440.2612410196043	20.126	0.58556	19.903	19.73	20.315	-0.22344	0.11857	-0.0006354	NaN	68.485	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47463	+		68136	31892	47821	47898							0.06452044057027706
RPGRRPSAPT	10	Unmodified	_RPGRRPSAPT_					0	0	0			REV__ENST00000341184.6_1_22:39853353-39853542:+|nuORF	REV__ENST00000341184.6_1_22:39853353-39853542:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7725830078125	2	547.812513	1093.61047	-0.7863	-0.00043075	3.6571	0.0020034	2.8708	0.0015727	547.8140408968164	35.754	0.30511	35.549	35.346	35.651	-0.20518					11	7	2	0	0	0	0.03519	1	2723	2723		30.318	0	1	106650	+		68137	30631	47822	47899	73937	73937					0.06741290408785972
RPGRSIKDEE	10	Unmodified	_RPGRSIKDEE_					0	0	0		ENGASE|p.G134Cfs*6|1|0.45|ENSG00000167280|chr17:79077824-79077825|-/TGTTGTGTCATGACATGATGGGC|frameshift_variant;nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE	ENGASE|p.G134Cfs*6|1|0.45|ENSG00000167280|chr17:79077824-79077825|-/TGTTGTGTCATGACATGATGGGC|frameshift_variant	ENGASE|p.G134Cfs*6|1|0.45|ENSG00000167280|chr17:79077824-79077825|-/TGTTGTGTCATGACATGATGGGC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8087768554688	2	593.812376	1185.6102	-2.0367	-0.0012094	-3.9581	-0.0023504	-5.9948	-0.0035598	593.8101463873134	21.58	0.86597	21.58	21.146	22.012	0					65	17	5	0	0	0	1.0447	1	660	660		40.058	3.6114	1	3271200			68138	708	47823	47900	73938	73938					0.024818258982804764
RPGRSIKDEE	10	Unmodified	_RPGRSIKDEE_					0	0	0		ENGASE|p.G134Cfs*6|1|0.45|ENSG00000167280|chr17:79077824-79077825|-/TGTTGTGTCATGACATGATGGGC|frameshift_variant;nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE	ENGASE|p.G134Cfs*6|1|0.45|ENSG00000167280|chr17:79077824-79077825|-/TGTTGTGTCATGACATGATGGGC|frameshift_variant	ENGASE|p.G134Cfs*6|1|0.45|ENSG00000167280|chr17:79077824-79077825|-/TGTTGTGTCATGACATGATGGGC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8087768554688	2	593.812376	1185.6102	-1.733	-0.0010291	-4.0533	-0.0024069	-5.7863	-0.003436	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	0.6365	1	734	734		72.879	18.103	1	2217700			68139	708	47823	47900	73939	73939					0.024818258982804764
RPGRTEREW	9	Unmodified	_RPGRTEREW_					0	0	0			REV__ENST00000416640.2_3_22:21698217-21699360:+|nuORF	REV__ENST00000416640.2_3_22:21698217-21699360:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.8088989257812	2	593.807428	1185.6003	-0.44472	-0.00026408	2.8001	0.0016627	2.3554	0.0013987	593.8091835062435	21.498	0.91965	21.569	21.156	22.075	0.071489					70	18	6	0	0	0	0.45795	1	607	607		62.107	3.3255	1	3784300	+		68140	32083	47824	47901	73940	73940					0.014926826835790052
RPGSRGLR	8	Unmodified	_RPGSRGLR_					0	0	0		ENST00000414563.6_1_6:157802226-157802931:+|nuORF	ENST00000414563.6_1_6:157802226-157802931:+|nuORF	ENST00000414563.6_1_6:157802226-157802931:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7701721191406	2	449.770117	897.525681	3.6482	0.0016408	-3.374	-0.0015175	0.27413	0.0001233	449.76846288190495	17.871	0.43971	17.871	17.697	18.136	0					18	8	3	0	0	0	1.043	1	219	219		30.504	1.3541	1	165110			68141	13863	47825	47902	73941	73941					0.07281964662854534
RPGSRLGLL	9	Unmodified	_RPGSRLGLL_					0	0	0		ENST00000265846.9_1_7:966239-994045:-|nuORF	ENST00000265846.9_1_7:966239-994045:-|nuORF	ENST00000265846.9_1_7:966239-994045:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2830505371094	2	484.803626	967.592698	-0.80802	-0.00039173	-3.2229	-0.0015625	-4.0309	-0.0019542	484.80409615805496	21.588	1.0164	21.588	20.949	21.965	0					48	20	4	0	0	0	0.024397	1	671	671		47.657	13.485	1	209420			68142	11603	47826	47903	73942	73942					0.10760575153938134
RPGTGLAVAR	10	Unmodified	_RPGTGLAVAR_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.2878723144531	2	499.298707	996.582862	-1.0004	-0.00049948	-0.24688	-0.00012326	-1.2472	-0.00062275	499.2992606955391	24.301	0.52683	24.254	23.826	24.353	-0.047148					13	11	2	0	0	0	0.03519	1	979	979		58.23	4.8785	1	29773	+		68143	27334	47827	47904	73943	73943					0.08443387148554393
RPGVLKGPWVV	11	Unmodified	_RPGVLKGPWVV_					0	0	0		ENST00000483354.5_1_20:3204321-3204438:+|nuORF	ENST00000483354.5_1_20:3204321-3204438:+|nuORF	ENST00000483354.5_1_20:3204321-3204438:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3651733398438	2	604.369133	1206.72371	0.12428	7.5109E-05	-4.1564	-0.002512	-4.0321	-0.0024369	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.0651	1	12960	12960		20.947	0.95016	1	4482300			68144	15282	47828	47905	73944	73944					0.12861965801948827
RPGVRPNL	8	Unmodified	_RPGVRPNL_					0	0	0		ENST00000587757.5_1_18:13612213-13612381:+|nuORF	ENST00000587757.5_1_18:13612213-13612381:+|nuORF	ENST00000587757.5_1_18:13612213-13612381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7903137207031	2	454.774868	907.535184	-0.28139	-0.00012797	0.96693	0.00043974	0.68554	0.00031177	454.77521235565587	25.505	1.0824	25.505	24.83	25.912	0					50	25	3	0	0	0	0.027866	1	1231	1231		37.159	1.5408	1	831700			68145	17275	47829	47906	73945	73945					0.07771732948356203
RPGVRPNL	8	Unmodified	_RPGVRPNL_					0	0	0		ENST00000587757.5_1_18:13612213-13612381:+|nuORF	ENST00000587757.5_1_18:13612213-13612381:+|nuORF	ENST00000587757.5_1_18:13612213-13612381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.78924560546875	2	454.774868	907.535184	0.41297	0.00018781	0.20881	9.496E-05	0.62178	0.00028277	454.7748661001767	25.427	1.362	25.507	25.05	26.412	0.08009					63	32	3	0	0	0	0.027866	1	1176	1176		30.504	2.6214	1	805560			68146	17275	47829	47906	73946	73946					0.07771732948356203
RPGVSDEGLRT	11	Unmodified	_RPGVSDEGLRT_					0	0	0		ENST00000405340.6_1_22:24200109-24200271:+|nuORF	ENST00000405340.6_1_22:24200109-24200271:+|nuORF	ENST00000405340.6_1_22:24200109-24200271:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.808837890625	2	593.812376	1185.6102	-2.0367	-0.0012094	-3.9581	-0.0023504	-5.9948	-0.0035598	593.8101463873134	21.58	0.86597	21.58	21.146	22.012	0					65	17	5	0	0	0	0.56299	1	672	672		72.243	13.461	1	3271200			68147	13716	47830	47907	73947	73947					0.02481825898257739
RPGVTLCALCP	11	Carbamidomethyl (C)	_RPGVTLC(Carbamidomethyl (C))ALCP_	RPGVTLC(0.993)ALC(0.007)P		RPGVTLC(21)ALC(-21)P		0	1	0			REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	593.8089599609375	2	593.807193	1185.59983	-1.1797	-0.00070051	3.9097	0.0023216	2.73	0.0016211	593.809614267033	21.683	0.90701	21.593	21.255	22.162	-0.090092					67	18	5	0	0	0	0.20553	2	662	662;710		98.629	43.907	2	3550700	+		68148	29319	47831	47908	73948;73949	73948	386;387				0.014458036478572467
RPGVTLCALCP	11	Carbamidomethyl (C)	_RPGVTLC(Carbamidomethyl (C))ALCP_	RPGVTLC(0.996)ALC(0.004)P		RPGVTLC(25)ALC(-25)P		0	1	0			REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	593.8088989257812	2	593.807193	1185.59983	-1.1813	-0.00070148	4.0608	0.0024113	2.8795	0.0017099	593.8096367420404	22.813	2.4224	22.737	22.082	24.505	-0.075296					155	54	4	0	0	0	0.40147	1	796	796		82.75	26.317	2	2203900	+		68149	29319	47831	47908	73950	73950	386;387				0.014458036478572467
RPGVTLCALCP	11	Carbamidomethyl (C)	_RPGVTLC(Carbamidomethyl (C))ALCP_	RPGVTLC(0.881)ALC(0.119)P		RPGVTLC(8.7)ALC(-8.7)P		0	1	0			REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.8089599609375	2	593.807193	1185.59983	-0.44472	-0.00026408	3.1951	0.0018973	2.7503	0.0016332	593.8091835062435	21.498	0.91965	21.569	21.156	22.075	0.071489					70	18	6	0	0	0	0.79111	1	629	629		58.23	8.7884	2	3784300	+		68150	29319	47831	47908	73951	73951	386;387				0.014458036478572467
RPGVTLCALCP	11	Carbamidomethyl (C)	_RPGVTLCALC(Carbamidomethyl (C))P_	RPGVTLC(0.226)ALC(0.774)P		RPGVTLC(-5.3)ALC(5.3)P		0	1	0			REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.808837890625	2	593.807193	1185.59983	-0.72804	-0.00043232	3.6102	0.0021438	2.8822	0.0017115	593.8093228779526	22.771	3.0568	22.845	22.03	25.087	0.073954					178	67	3	0	0	0	0.75995	2	842	768;842		60.118	12.461	2	2073100	+		68151	29319	47831	47908	73952;73953	73953	386;387				0.014458036478572467
RPGVTLCALCP	11	Carbamidomethyl (C)	_RPGVTLC(Carbamidomethyl (C))ALCP_					0	1	0			REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	REV__ENST00000216468.7_1_14:77807904-77808090:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	593.807193	1185.59983	-0.44472	-0.00026408	3.1951	0.0018973	2.7503	0.0016332	593.8091835062435	21.498	0.91965	21.569	21.156	22.075	0.071489	-0.011549	-0.00095429	NaN	98.629	70	18	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3784300	+		68152	29319	47831	47908			386;387				0.014458036478572467
RPGWIPLCV	9	Unmodified	_RPGWIPLCV_					0	0	0		ENST00000371065.8_1_1:65897894-65898110:+|nuORF	ENST00000371065.8_1_1:65897894-65898110:+|nuORF	ENST00000371065.8_1_1:65897894-65898110:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7919311523438	2	520.78913	1039.56371	0.37618	0.00019591	-1.2932	-0.00067347	-0.91699	-0.00047756	521.2896449202051	54.208	0.74901	54.306	53.842	54.591	0.098015					49	21	3	0	0	0	0.024412	1	5768	5768		31.955	0	1	593190			68153	12981	47832	47909	73954	73954					0.045507145332976506
RPHAPGRPA	9	Unmodified	_RPHAPGRPA_					0	0	0		ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;nc|ENSG00000108963|Q9BZG8-2|DPH1	ENSG00000108963|ENST00000263083|DPH1	ENSG00000108963|ENST00000263083|DPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7701721191406	2	479.770117	957.525681	2.0034	0.00096117	-1.8649	-0.00089474	0.13846	6.6429E-05	479.76903324404856	18.996	0.69019	18.996	18.577	19.268	0					24	13	2	0	0	0	0.70186	2	356	356;369		45.952	9.2769	1	157480			68154	2953	47833	47910	73955;73956	73955					0.045219646628424925
RPHEKSEG	8	Unmodified	_RPHEKSEG_					0	0	0			REV__SYCE2|p.L21F|1|0.23|ENSG00000161860|chr19:12918290-12918290|C/A|missense_variant	REV__SYCE2|p.L21F|1|0.23|ENSG00000161860|chr19:12918290-12918290|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.2900085449219	2	470.235773	938.456993	-0.30301	-0.00014248	-2.2318	-0.0010495	-2.5348	-0.001192	470.234747299151	28.025	0.96196	27.78	27.16	28.121	-0.24524					39	22	3	0	0	0	0.027866	1	1600	1600		44.117	19.914	1	827180	+		68155	25403	47834	47911	73957	73957					-0.014697444275157068
RPHFSPKKLY	10	Unmodified	_RPHFSPKKLY_					0	0	0			REV__ENST00000379997.7_1_9:27561302-27561452:-|nuORF	REV__ENST00000379997.7_1_9:27561302-27561452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.9104919433594	3	424.911902	1271.71388	-0.67753	-0.00028789	2.2874	0.00097193	1.6098	0.00068404	424.91269257901234	39.098	1.2978	39.098	38.473	39.771	0					99	35	5	0	0	0	1.0177	2	3279	3279;3290		43.651	6.1426	1	12888000	+		68156	31458	47835	47912	73958;73959	73958					0.08888777796619252
RPHGPAAPR	9	Unmodified	_RPHGPAAPR_					0	0	0			REV__ENSG00000165886|ENST00000370664|UBTD1	REV__ENSG00000165886|ENST00000370664|UBTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7698974609375	2	479.770117	957.525681	2.8311	0.0013583	-2.8918	-0.0013874	-0.060633	-2.909E-05	479.7685514177219	19.267	0.88711	19.333	18.75	19.637	0.066195					34	17	3	0	0	0	0.83071	1	350	350		37.159	0	1	119680	+		68157	25940	47836	47913	73960	73960					0.04521964662831124
RPHGSLGK	8	Unmodified	_RPHGSLGK_					0	0	0			REV__ENSG00000277556|ENST00000374779|OR13C5	REV__ENSG00000277556|ENST00000374779|OR13C5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2473449707031	2	426.245944	850.477334	0.58134	0.0002478	1.4806	0.00063108	2.0619	0.00087888	426.24742133734424	103.3	1.5975	103.17	102.86	104.46	-0.12724					72	39	5	0	0	0	1.0516	1	12837	12837		29.15	2.3535	1	863380	+		68158	29198	47837	47914	73961	73961					0.046114710229517186
RPHHHPQHH	9	Unmodified	_RPHHHPQHH_					0	0	0			REV__DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	REV__DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.793212890625	2	591.792447	1181.57034	2.7958	0.0016546	-1.1161	-0.0006605	1.6798	0.00099406	591.791655660008	19.447	0.72739	19.513	19.242	19.969	0.066195					27	14	3	0	0	0	0.52323	1	373	373		57.811	20.652	1	161290	+		68159	19726	47838	47915	73962	73962					-0.013182114711071335
RPHHHPQHH	9	Unmodified	_RPHHHPQHH_					0	0	0			REV__DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	REV__DYRK1B|p.Q545Sfs*19|1|0.12|ENSG00000105204|chr19:39825972-39825972|G/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	591.792447	1181.57034	2.7958	0.0016546	-1.1161	-0.0006605	1.6798	0.00099406	591.791655660008	19.447	0.72739	19.513	19.242	19.969	0.066195	0.14267	-0.0028487	NaN	57.811	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161290	+		68160	19726	47838	47915							-0.013182114711071335
RPHPLPGN	8	Unmodified	_RPHPLPGN_					0	0	0		ENST00000220809.8_1_8:42065013-42065229:-|nuORF	ENST00000220809.8_1_8:42065013-42065229:-|nuORF	ENST00000220809.8_1_8:42065013-42065229:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.2459411621094	2	444.245944	886.477334	0.15763	7.0029E-05	-0.96771	-0.0004299	-0.81007	-0.00035987	444.24545220635093	102.77	1.0672	102.77	102.5	103.57	0.0054169					45	25	2	0	0	0	0.96719	1	13132	13132		42.474	1.6963	1	7580800			68161	11180	47839	47916	73963	73963					0.02955471022949041
RPHPLPGN	8	Unmodified	_RPHPLPGN_					0	0	0		ENST00000220809.8_1_8:42065013-42065229:-|nuORF	ENST00000220809.8_1_8:42065013-42065229:-|nuORF	ENST00000220809.8_1_8:42065013-42065229:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.2451171875	2	444.245944	886.477334	0.24163	0.00010734	-1.5669	-0.00069608	-1.3253	-0.00058874	444.24543220448146	102.93	1.3256	102.81	102.15	103.48	-0.12724					79	31	4	0	0	0	1.0133	1	12803	12803		35.201	2.3883	1	6673700			68162	11180	47839	47916	73964	73964					0.02955471022949041
RPHPLPGN	8	Unmodified	_RPHPLPGN_					0	0	0		ENST00000220809.8_1_8:42065013-42065229:-|nuORF	ENST00000220809.8_1_8:42065013-42065229:-|nuORF	ENST00000220809.8_1_8:42065013-42065229:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.2450256347656	2	444.245944	886.477334	0.49711	0.00022084	-1.7165	-0.00076253	-1.2193	-0.00054169	444.2453203047101	103.02	1.0446	102.85	102.55	103.59	-0.17034					50	25	5	0	0	0	0.95417	2	12797	12797;12809		44.531	3.2216	1	10788000			68163	11180	47839	47916	73965;73966	73965					0.02955471022949041
RPHQDRLR	8	Unmodified	_RPHQDRLR_					0	0	0		ENST00000532940.5_1_8:144921262-144922356:-|nuORF	ENST00000532940.5_1_8:144921262-144922356:-|nuORF	ENST00000532940.5_1_8:144921262-144922356:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.78369140625	2	539.304855	1076.59516	-1.0928	-0.00058933	2.6947	0.0014533	1.6019	0.00086393	539.30613182788	29.619	0.40589	29.622	29.427	29.833	0.0031376					15	9	2	0	0	0	0.027866	1	1807	1807		49.442	8.6634	1	106100			68164	16304	47840	47917	73967	73967					0.05992423611587583
RPHRGESH	8	Unmodified	_RPHRGESH_					0	0	0			REV__nc|nan|Q9BWL3-5|C1orf43	REV__nc|nan|Q9BWL3-5|C1orf43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2300720214844	2	488.247006	974.47946	-0.36471	-0.00017807	2.4679	0.0012049	2.1032	0.0010269	488.25005594186365	31.764	0.72264	31.776	31.34	32.063	0.011799					23	17	2	0	0	0	0.027866	1	2078	2078		26.796	0	1	127820	+		68165	24264	47841	47918	73968	73968					-0.008801002392374357
RPHSGLPGK	9	Unmodified	_RPHSGLPGK_					0	0	0		nc|ENSG00000026559|Q9UIX4-2|KCNG1;ENSG00000026559|ENST00000371571|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.77252197265625	2	474.772326	947.530098	0.050788	2.4113E-05	-0.26251	-0.00012463	-0.21173	-0.00010052	474.7722953484883	23.256	1.9625	23.195	21.807	23.77	-0.060862					103	43	4	0	0	0	0.53979	2	897	859;897		56.721	14.131	1	2833900			68166	994	47842	47919	73969;73970	73970					0.05423429085760745
RPHTNETSL	9	Unmodified	_RPHTNETSL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7673950195312	2	527.767437	1053.52032	-1.0641	-0.00056161	0.67864	0.00035817	-0.38548	-0.00020344	527.7676748422131	22.884	0.7488	22.884	22.572	23.321	0					45	16	4	0	0	0	0.11727	2	842	842;853		106.68	24.871	1	1117700			68167	8148	47843	47920	73971;73972	73971					-0.004298037102671515
RPHTNETSL	9	Unmodified	_RPHTNETSL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.7674560546875	2	527.767437	1053.52032	-0.60817	-0.00032097	0.21798	0.00011504	-0.39019	-0.00020593	527.7674367835813	22.923	0.62234	22.862	22.568	23.19	-0.060862					35	13	4	0	0	0	0.12933	2	837	837;849		104.01	18.723	1	1309600			68168	8148	47843	47920	73973;73974	73973					-0.004298037102671515
RPHTNETSL	9	Unmodified	_RPHTNETSL_					0	0	0		nc|ENSG00000171444|P23508|MCC;ENSG00000171444|ENST00000408903|MCC	nc|ENSG00000171444|P23508|MCC	nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7675170898438	2	527.767437	1053.52032	-0.69639	-0.00036753	0.52389	0.00027649	-0.1725	-9.1041E-05	527.7675452770459	22.74	0.72167	22.814	22.51	23.232	0.073954					43	15	4	0	0	0	0.087669	2	780	780;792		114.89	16.881	1	1190800			68169	8148	47843	47920	73975;73976	73975					-0.004298037102671515
RPHVAGIHGRS	11	Unmodified	_RPHVAGIHGRS_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.831237	1185.64792	-0.28348	-0.00016834	-2.9402	-0.001746	-3.2237	-0.0019143	593.8294332623447	35.769	0.40253	35.571	35.44	35.843	-0.19829					17	11	2	0	0	0	0.024812	1	2776	2776		49.536	13.089	1	414170			68170	362	47844	47921	73977	73977					0.06252381674426033
RPHYGSVL	8	Unmodified	_RPHYGSVL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.N38Efs*5|1|0.23|ENSG00000140575|chr15:90390827-90390828|-/A|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	464.753601	927.49265	-0.52497	-0.00024398	1.1018	0.00051206	0.57681	0.00026808	464.7540544159541	33.821	0.58772	33.821	33.662	34.25	0					26	14	2	0	0	0	0.027866	1	2480	2480		42.396	11.892	1	1091300			68171	5429	47845	47922	73978	73978					0.026003378201380656
RPHYPPSHLH	10	Unmodified	_RPHYPPSHLH_					0	0	0		ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	620.8175659179688	2	620.820338	1239.62612	-0.81333	-0.00050493	-3.711	-0.0023039	-4.5244	-0.0028088	620.8179720268789	24.344	0.66164	24.344	24.08	24.741	0					48	14	5	0	0	0	0.85955	1	1071	1071		56.721	0	1	1444400			68172	12694	47846	47923	73979	73979					0.0158957692583499
RPICKIPEGAK	11	Unmodified	_RPICKIPEGAK_					0	0	0		nc|ENSG00000175592|P15407-2|FOSL1;FOSL1|p.E211Nfs*11|1|0.25|ENSG00000175592|chr11:65893072-65893072|A/-|frameshift_variant;ENSG00000175592|ENST00000312562|FOSL1	nc|ENSG00000175592|P15407-2|FOSL1	nc|ENSG00000175592|P15407-2|FOSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	404.569147	1210.68561	1.0645	0.00043065	1.9821	0.00080191	3.0466	0.0012326	404.5697980705037	26.834	0.42216	26.915	26.714	27.136	0.081293					18	10	2	0	0	0	0.024768	1	1364	1364		36.528	9.4806	1	69552			68173	8574	47847	47924	73980	73980					0.088697118249911
RPIFSRLY	8	Unmodified	_RPIFSRLY_					0	0	0		ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000173110|ENST00000309758|HSPA6	ENST00000445535.1_1_1:161576981-161578004:+|nuORF	ENST00000445535.1_1_1:161576981-161578004:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2322998046875	2	526.306001	1050.59745	0.33076	0.00017408	-0.51506	-0.00027108	-0.1843	-9.6997E-05	526.305732366129	50.603	0.43974	50.422	50.245	50.685	-0.18071					17	11	2	0	0	0	0.027866	1	5118	5118		49.442	0	1	272080			68174	8340	47848	47925	73981	73981					0.07417459296698325
RPIGSCSDV	9	Unmodified	_RPIGSCSDV_					0	0	0			REV__ENST00000222462.2_1_7:120979414-120979543:+|nuORF	REV__ENST00000222462.2_1_7:120979414-120979543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.7153015136719	2	467.226559	932.438566	-0.23599	-0.00011026	-1.4893	-0.00069586	-1.7253	-0.00080612	467.22648788309283	26.712	1.421	26.712	25.652	27.073	0					60	33	3	0	0	0	0.02435	1	1305	1305		34.173	14.813	1	146440	+		68175	29356	47849	47926	73982	73982					-0.030356223937360483
RPIHFLQTE	9	Unmodified	_RPIHFLQTE_					0	0	0			REV__nc|ENSG00000155066|Q8N271-2|PROM2	REV__nc|ENSG00000155066|Q8N271-2|PROM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.8457641601562	2	570.811648	1139.60874	-0.55399	-0.00031623	-0.67627	-0.00038602	-1.2303	-0.00070225	570.8111745832439	38.896	0.69055	38.797	38.437	39.127	-0.098751					24	18	2	0	0	0	0.024511	1	3233	3233		19.104	0	1	290890	+		68176	24989	47850	47927	73983	73983					0.04452236600195647
RPIIVSLID	9	Unmodified	_RPIIVSLID_					0	0	0			REV__nc|ENSG00000161955|O75888-5|TNFSF13	REV__nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3265380859375	2	513.321317	1024.62808	0.34978	0.00017955	-0.19688	-0.00010106	0.15291	7.849E-05	513.3205629958153	40.347	0.83258	40.235	39.867	40.7	-0.11222					33	22	2	0	0	0	0.023239	1	3466	3466		64.207	2.0999	1	265640	+		68177	25409	47851	47928	73984	73984					0.11675192891107145
RPIIVSLID	9	Unmodified	_RPIIVSLID_					0	0	0			REV__nc|ENSG00000161955|O75888-5|TNFSF13	REV__nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.321317	1024.62808	-0.063389	-3.2539E-05	0.10047	5.1572E-05	0.037077	1.9032E-05	513.3206554960019	40.255	0.74358	40.255	39.879	40.623	0	0.010234	0.00018274	NaN	64.207	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238470	+		68178	25409	47851	47928							0.11675192891107145
RPIKAPVQ	8	Unmodified	_RPIKAPVQ_					0	0	0			REV__ENST00000543133.5_1_22:18210886-18211162:+|nuORF	REV__ENST00000543133.5_1_22:18210886-18211162:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7903137207031	2	454.787444	907.560336	-0.25791	-0.00011729	0.14822	6.7409E-05	-0.10969	-4.9886E-05	454.7873306337661	25.549	1.1154	25.549	25.009	26.124	0					78	26	4	0	0	0	0.95679	1	1231	1231		44.117	3.5442	1	1491600	+		68179	34801	47852	47929	73985	73985					0.1028578775093365
RPIKERSPI	9	Unmodified	_RPIKERSPI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3353881835938	2	548.33529	1094.65603	-1.3827	-0.0007582	0.18392	0.00010085	-1.1988	-0.00065735	548.3353474770954	43.792	0.89397	43.647	43.205	44.099	-0.14471					74	24	5	0	0	0	0.32811	1	4091	4091		71.877	9.7701	1	7697700	+		68180	36804	47853	47930	73986	73986					0.11248515871170639
RPIKERSPI	9	Unmodified	_RPIKERSPI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.33544921875	2	548.33529	1094.65603	-0.54546	-0.0002991	-0.46691	-0.00025602	-1.0124	-0.00055512	548.3350153282292	43.616	0.97869	43.647	43.191	44.17	0.030827					84	26	5	0	0	0	0.29158	1	4027	4027		76.774	2.5191	1	8497200	+		68181	36804	47853	47930	73987	73987					0.11248515871170639
RPIKKNSL	8	Unmodified	_RPIKKNSL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant;ZNF292|p.S642Ffs*8|1|0.15|ENSG00000188994|chr6:87255551-87255552|-/T|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.3057556152344	2	478.306001	954.597449	1.0915	0.00052206	-1.2815	-0.00061293	-0.18999	-9.0875E-05	478.3054041702636	18.625	0.73953	18.469	17.953	18.693	-0.15637					31	14	4	0	0	0	1.0009	1	337	337		37.159	3.6435	1	256740			68182	9775	47854	47931	73988	73988					0.11833459296701676
RPILLHEAF	9	Unmodified	_RPILLHEAF_					0	0	0			REV__ENSG00000126231|ENST00000375547|PROZ	REV__ENSG00000126231|ENST00000375547|PROZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.33544921875	2	548.319109	1094.62366	-0.27431	-0.00015041	-2.5745	-0.0014117	-2.8488	-0.0015621	548.3175937290654	43.293	0.83657	43.324	42.939	43.775	0.030823					54	22	4	0	0	0	0.024205	1	4027	4027		73.975	12.283	1	2656000	+		68183	22883	47855	47932	73989	73989					0.08013728468154113
RPILLVQNSF	10	Unmodified	_RPILLVQNSF_					0	0	0		ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	593.8088989257812	2	593.850773	1185.68699	-1.1853	-0.00070391	2.0909	0.0012417	0.90559	0.00053778	594.3514356273618	21.615	0.27984	21.525	21.403	21.683	-0.090092					6	5	2	0	0	0	0.03519	1	673	673		51.193	18.38	1	11851			68184	17334	47856	47933	73990	73990					0.10157669185400664
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant;TP53|p.D259E|1|0.33|ENSG00000141510|chr17:7674186-7674186|G/T|missense_variant;nc|ENSG00000141510|P04637-4|TP53;TP53|p.S260Pfs*95|1|0.61|ENSG00000141510|chr17:7674185-7674186|-/GTCTTCCAGTGTGATGATGGTGAGGATGG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R290Sfs*56|1|0.38|ENSG00000141510|chr17:7673752-7673753|-/GA|frameshift_variant;TP53|p.S260Pfs*85|1|0.33|ENSG00000141510|chr17:7674185-7674185|A/-|frameshift_variant;TP53|p.R342Efs*3|1|0.39|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.L330Ffs*15|1|0.28|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant;TP53|p.H297Pfs*48|1|0.47|ENSG00000141510|chr17:7673730-7673730|T/-|frameshift_variant;TP53|p.E294Sfs*51|1|0.57|ENSG00000141510|chr17:7673744-7673744|T/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.K320Nfs*19|1|0.21|ENSG00000141510|chr17:7673550-7673568|TTCTCCATCCAGTGGTTTC/-|frameshift_variant;TP53|p.Q317Pfs*20|1|0.41|ENSG00000141510|chr17:7673578-7673579|-/G|frameshift_variant;TP53|p.T329Hfs*8|2|0.79|ENSG00000141510|chr17:7673544-7673545|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.D281Efs*26|1|0.76|ENSG00000141510|chr17:7673777-7673778|-/TCTC|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;TP53|p.E258A|1|0.33|ENSG00000141510|chr17:7674190-7674190|T/G|missense_variant;TP53|p.D259N|1|0.39|ENSG00000141510|chr17:7674188-7674188|C/T|missense_variant;ENSG00000141510|ENST00000269305|TP53	TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant	TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2691040039062	2	520.347335	1038.68012	-1.471	-0.00076543	1.0027	0.00052174	-0.46833	-0.00024369	520.3475718303706	75.452	1.2744	75.452	75.116	76.391	0					51	33	3	0	0	0	0.023417	1	9216	9216		79.451	18.479	1	451130			68185	5501	47857	47934	73991	73991					0.1623235630486306
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant;TP53|p.D259E|1|0.33|ENSG00000141510|chr17:7674186-7674186|G/T|missense_variant;nc|ENSG00000141510|P04637-4|TP53;TP53|p.S260Pfs*95|1|0.61|ENSG00000141510|chr17:7674185-7674186|-/GTCTTCCAGTGTGATGATGGTGAGGATGG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R290Sfs*56|1|0.38|ENSG00000141510|chr17:7673752-7673753|-/GA|frameshift_variant;TP53|p.S260Pfs*85|1|0.33|ENSG00000141510|chr17:7674185-7674185|A/-|frameshift_variant;TP53|p.R342Efs*3|1|0.39|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.L330Ffs*15|1|0.28|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant;TP53|p.H297Pfs*48|1|0.47|ENSG00000141510|chr17:7673730-7673730|T/-|frameshift_variant;TP53|p.E294Sfs*51|1|0.57|ENSG00000141510|chr17:7673744-7673744|T/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.K320Nfs*19|1|0.21|ENSG00000141510|chr17:7673550-7673568|TTCTCCATCCAGTGGTTTC/-|frameshift_variant;TP53|p.Q317Pfs*20|1|0.41|ENSG00000141510|chr17:7673578-7673579|-/G|frameshift_variant;TP53|p.T329Hfs*8|2|0.79|ENSG00000141510|chr17:7673544-7673545|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.D281Efs*26|1|0.76|ENSG00000141510|chr17:7673777-7673778|-/TCTC|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;TP53|p.E258A|1|0.33|ENSG00000141510|chr17:7674190-7674190|T/G|missense_variant;TP53|p.D259N|1|0.39|ENSG00000141510|chr17:7674188-7674188|C/T|missense_variant;ENSG00000141510|ENST00000269305|TP53	TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant	TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2696533203125	2	520.347335	1038.68012	-0.42427	-0.00022077	-0.30727	-0.00015989	-0.73154	-0.00038066	520.3470526107578	75.597	0.52572	75.325	74.976	75.502	-0.27266					17	12	2	0	0	0	0.023635	1	8895	8895		76.774	15.802	1	229260			68186	5501	47857	47934	73992	73992					0.1623235630486306
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant;TP53|p.D259E|1|0.33|ENSG00000141510|chr17:7674186-7674186|G/T|missense_variant;nc|ENSG00000141510|P04637-4|TP53;TP53|p.S260Pfs*95|1|0.61|ENSG00000141510|chr17:7674185-7674186|-/GTCTTCCAGTGTGATGATGGTGAGGATGG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R290Sfs*56|1|0.38|ENSG00000141510|chr17:7673752-7673753|-/GA|frameshift_variant;TP53|p.S260Pfs*85|1|0.33|ENSG00000141510|chr17:7674185-7674185|A/-|frameshift_variant;TP53|p.R342Efs*3|1|0.39|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.L330Ffs*15|1|0.28|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant;TP53|p.H297Pfs*48|1|0.47|ENSG00000141510|chr17:7673730-7673730|T/-|frameshift_variant;TP53|p.E294Sfs*51|1|0.57|ENSG00000141510|chr17:7673744-7673744|T/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.K320Nfs*19|1|0.21|ENSG00000141510|chr17:7673550-7673568|TTCTCCATCCAGTGGTTTC/-|frameshift_variant;TP53|p.Q317Pfs*20|1|0.41|ENSG00000141510|chr17:7673578-7673579|-/G|frameshift_variant;TP53|p.T329Hfs*8|2|0.79|ENSG00000141510|chr17:7673544-7673545|-/A|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.D281Efs*26|1|0.76|ENSG00000141510|chr17:7673777-7673778|-/TCTC|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;TP53|p.E258A|1|0.33|ENSG00000141510|chr17:7674190-7674190|T/G|missense_variant;TP53|p.D259N|1|0.39|ENSG00000141510|chr17:7674188-7674188|C/T|missense_variant;ENSG00000141510|ENST00000269305|TP53	TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant	TP53|p.E258D|1|0.49|ENSG00000141510|chr17:7674189-7674189|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.2691040039062	2	520.347335	1038.68012	-0.051738	-2.6922E-05	-0.78306	-0.00040746	-0.83479	-0.00043438	520.3467451183433	75.492	0.40493	75.233	75.033	75.438	-0.25865					16	9	2	0	0	0	0.023817	1	8916	8916		82.305	10.927	1	109480			68187	5501	47857	47934	73993	73993					0.1623235630486306
RPINGPGK	8	Unmodified	_RPINGPGK_					0	0	0			REV__ENSG00000132016|ENST00000586783|BRME1	REV__ENSG00000132016|ENST00000586783|BRME1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.52166748046875	2	419.748319	837.482085	1.6477	0.00069164	-3.7556	-0.0015764	-2.1078	-0.00088476	419.74639682291405	25.014	0.56628	24.842	24.383	24.95	-0.17151					17	12	2	0	0	0	0.027866	1	1087	1087		18.324	5.3652	1	135050	+		68188	23251	47858	47935	73994	73994					0.056843551657038915
RPIPIIKLEW	10	Unmodified	_RPIPIIKLEW_					0	0	0		nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000124493|ENST00000538487|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	632.3665161132812	2	632.892441	1263.77033	0.26711	0.00016905	0.45608	0.00028865	0.72319	0.0004577	633.3947245315096	100.08	0.41969	99.95	99.717	100.14	-0.12503					18	13	2	0	0	0	0.03519	1	12411	12411		31.53	0	1	1240800			68189	4053	47859	47936	73995	73995					0.14899405633263996
RPIPSVRASL	10	Unmodified	_RPIPSVRASL_					0	0	0			REV__ENST00000375114.7_1_20:32581481-32619357:+|nuORF	REV__ENST00000375114.7_1_20:32581481-32619357:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3348388671875	2	548.33529	1094.65603	-0.54546	-0.0002991	-0.46691	-0.00025602	-1.0124	-0.00055512	548.3350153282292	43.616	0.97869	43.647	43.191	44.17	0.030827					84	26	5	0	0	0	1.0002	1	4049	4049		45.972	0	1	8497200	+		68190	31318	47860	47937	73996	73996					0.11248515871170639
RPIQELKNS	9	Unmodified	_RPIQELKNS_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3251342773438	2	542.809105	1083.60366	-1.121	-0.00060851	4.0738	0.0022113	2.9527	0.0016028	542.8114263864516	45.442	1.1669	45.293	45.009	46.176	-0.1488					70	33	4	0	0	0	0.024261	1	4425	4425		45.972	4.5456	1	2951100	+		68191	27378	47861	47938	73997	73997					0.06519932737569434
RPIRERQEK	9	Unmodified	_RPIRERQEK_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.23907470703125	3	404.570427	1210.68945	0.68579	0.00027745	0.35226	0.00014252	1.0381	0.00041997	404.57050260100687	27.513	0.47545	27.513	27.251	27.726	0					20	12	2	0	0	0	0.024313	1	1488	1488		60.118	29.549	1	320620	+		68192	24867	47862	47939	73998	73998					0.0925351764306015
RPIRERQEK	9	Unmodified	_RPIRERQEK_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.2388000488281	3	404.570427	1210.68945	0.13233	5.3535E-05	0.52523	0.00021249	0.65756	0.00026603	404.57067426511077	27.05	0.51324	27.037	26.621	27.134	-0.012983					19	12	2	0	0	0	0.024313	1	1424	1424		51.193	6.8155	1	58481	+		68193	24867	47862	47939	73999	73999					0.0925351764306015
RPIRERQEK	9	Unmodified	_RPIRERQEK_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	405.2391357421875	3	404.570427	1210.68945	1.039	0.00042036	-0.1621	-6.558E-05	0.87694	0.00035478	404.5701677507218	27.244	0.50988	27.325	27.136	27.646	0.081291					23	13	2	0	0	0	0.024313	1	1409	1409		60.118	0	1	331110	+		68194	24867	47862	47939	74000	74000					0.0925351764306015
RPIRSQSIEK	10	Unmodified	_RPIRSQSIEK_					0	0	0			REV__SYBU|p.R22Q|1|0.04|ENSG00000147642|chr8:109642892-109642892|C/T|missense_variant	REV__SYBU|p.R22Q|1|0.04|ENSG00000147642|chr8:109642892-109642892|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.23907470703125	3	405.238566	1212.69387	0.78009	0.00031612	-0.60426	-0.00024487	0.17583	7.1252E-05	405.2384038753428	27.184	1.0993	27.184	26.825	27.924	0					93	28	5	0	0	0	0.96069	1	1488	1488		50.034	6.3827	1	16163000	+		68195	37662	47863	47940	74001	74001					0.09602982065985088
RPISGQKEV	9	Unmodified	_RPISGQKEV_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2917785644531	2	507.290548	1012.56654	-0.98191	-0.00049812	0.1794	9.1008E-05	-0.80251	-0.00040711	507.290482646332	21.369	0.8686	21.369	21.048	21.916	0					53	17	4	0	0	0	0.26966	3	655	645;655;665		79.713	12.034	1	1000600			68196	4622	47864	47941	74002;74003;74004	74003					0.06076261191810772
RPISGQKEV	9	Unmodified	_RPISGQKEV_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.292724609375	2	507.290548	1012.56654	-0.49919	-0.00025324	-0.35016	-0.00017763	-0.84935	-0.00043087	507.29023521787514	21.473	0.81574	21.383	21.059	21.875	-0.090092					51	16	4	0	0	0	0.33603	2	647	647;668		70.816	16.04	1	1051100			68197	4622	47864	47941	74005;74006	74005					0.06076261191810772
RPISGQKEV	9	Unmodified	_RPISGQKEV_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2918701171875	2	507.290548	1012.56654	-0.19931	-0.00010111	-0.29269	-0.00014848	-0.49199	-0.00024958	507.29028140352375	21.325	0.92149	21.397	21.057	21.978	0.071487					52	18	4	0	0	0	0.6238	1	605	605		51.193	5.2204	1	1018300			68198	4622	47864	47941	74007	74007					0.06076261191810772
RPISKKGQ	8	Unmodified	_RPISKKGQ_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2825012207031	2	457.282526	912.550499	-0.11737	-5.3669E-05	-0.39073	-0.00017868	-0.5081	-0.00023235	457.2823220451727	34.819	1.2079	34.819	34.479	35.687	0					65	31	4	0	0	0	1.0009	1	2611	2611		37.159	1.5408	1	8636700	+		68199	24784	47865	47942	74008	74008					0.09072599745559273
RPISLLWVT	9	Unmodified	_RPISLLWVT_					0	0	0			REV__ENST00000588831.5_1_19:36428129-36428243:+|nuORF	REV__ENST00000588831.5_1_19:36428129-36428243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3116455078125	2	542.829309	1083.64407	0.18551	0.0001007	-4.12	-0.0022364	-3.9344	-0.0021357	542.8268159214865	40.721	0.8877	40.598	40.301	41.189	-0.12318					53	24	3	0	0	0	0.024477	1	3592	3592		35.618	6.4482	1	1856900	+		68200	35657	47866	47943	74009	74009					0.10558899127977384
RPIVRPAL	8	Unmodified	_RPIVRPAL_					0	0	0			REV__ENST00000380384.5_1_9:19379789-19380122:-|nuORF	REV__ENST00000380384.5_1_9:19379789-19380122:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.30279541015625	2	461.303262	920.59197	0.31474	0.00014519	-0.43102	-0.00019883	-0.11628	-5.3641E-05	461.3028831639146	45.852	0.61942	45.896	45.647	46.267	0.04388					47	17	4	0	0	0	0.65272	1	4430	4430		71.378	11.084	1	1791500	+		68201	31477	47867	47944	74010	74010					0.12849780504882347
RPKAENQAL	9	Unmodified	_RPKAENQAL_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.789306640625	2	513.788173	1025.56179	-0.42972	-0.00022078	4.4659	0.0022945	4.0362	0.0020738	513.79049546212	21.846	0.7565	21.756	21.453	22.209	-0.089573					43	15	4	0	0	0	0.15366	2	721	697;721		98.629	29.843	1	1844800			68202	9912	47868	47945	74011;74012	74012					0.05003377049024493
RPKAGDTREV	10	Unmodified	_RPKAGDTREV_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.8084106445312	2	564.809636	1127.60472	2.1605	0.0012203	-2.2672	-0.0012806	-0.10673	-6.028E-05	564.808129611745	18.407	0.44015	18.407	18.186	18.626	0					17	8	3	0	0	0	0.99657	1	285	285		46.457	8.6453	1	87413			68203	9117	47869	47946	74013	74013					0.04602147106470511
RPKAGDTREV	10	Unmodified	_RPKAGDTREV_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.809636	1127.60472	-0.13714	-7.746E-05	0.20112	0.00011359	0.063977	3.6135E-05	564.8095584415296	18.622	0.39184	18.49	18.302	18.694	-0.13148	0.041736	0.0018407	NaN	46.457	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81571			68204	9117	47869	47946							0.04602147106470511
RPKAKRKEEP	10	Unmodified	_RPKAKRKEEP_					0	0	0		nc|ENSG00000133997|O75586-2|MED6;ENSG00000133997|ENST00000256379|MED6	nc|ENSG00000133997|O75586-2|MED6	nc|ENSG00000133997|O75586-2|MED6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.21435546875	3	413.582444	1237.7255	-0.78418	-0.00032432	0.90484	0.00037423	0.12066	4.9903E-05	413.5828649931176	24.738	0.49283	24.691	24.442	24.935	-0.047148					21	10	3	0	0	0	0.03519	1	1064	1064		8.7993	0	1	107220			68205	4742	47870	47947	74014	74014					0.11614974819940471
RPKALTQVL	9	Unmodified	_RPKALTQVL_					0	0	0		nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENSG00000116586|ENST00000368305|LAMTOR2;ENST00000489664.1_1_1:156024680-156025387:+|nuORF;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.82568359375	2	513.326934	1024.63931	-1.1295	-0.00057982	1.386	0.00071147	0.25647	0.00013165	513.3272656718003	40.129	0.55061	40.152	39.873	40.424	0.023006					20	14	2	0	0	0	0.024319	1	3445	3445		47.657	3.5405	1	1647000			68206	3558	47871	47948	74015	74015					0.12798014985219197
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.3008117675781	2	506.300916	1010.58728	-0.80486	-0.0004075	-0.0014386	-7.2837E-07	-0.8063	-0.00040823	506.3008865667819	24.848	1.3138	24.848	24.297	25.611	0					73	30	4	0	0	0	0.19099	3	1121	1109;1121;1133		90.37	21.712	1	4105400			68207	6821	47872	47949	74016;74017;74018	74017					0.08240851571463281
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3009338378906	2	506.300916	1010.58728	-1.2522	-0.00063399	0.50391	0.00025513	-0.74829	-0.00037886	506.3011496875245	24.913	1.4062	24.878	24.233	25.639	-0.034395					79	32	4	0	0	0	0.14024	3	1130	1105;1117;1130		101.6	40.629	1	4158000			68208	6821	47872	47949	74019;74020;74021	74021					0.08240851571463281
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.3011779785156	2	506.300916	1010.58728	0.25477	0.00012899	-1.0446	-0.0005289	-0.78985	-0.0003999	506.30036347289314	24.809	1.346	24.887	24.275	25.621	0.078346					76	30	4	0	0	0	0.077175	3	1055	1055;1066;1078		118.74	54.536	1	3889900			68209	6821	47872	47949	74022;74023;74024	74022					0.08240851571463281
RPKATLRG	8	Unmodified	_RPKATLRG_					0	0	0			REV__ENST00000528098.5_1_11:57193086-57193530:-|nuORF	REV__ENST00000528098.5_1_11:57193086-57193530:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.7827453613281	2	449.782693	897.550834	4.0094	0.0018033	-3.8148	-0.0017158	0.19456	8.751E-05	449.78081552936095	18.462	0.54049	18.526	18.353	18.893	0.063307					22	10	3	0	0	0	1.0574	1	250	250		23.042	1.3402	1	174740	+		68210	34487	47873	47950	74025	74025					0.09796019465420613
RPKAVREQ	8	Unmodified	_RPKAVREQ_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2908020019531	2	492.290882	982.567212	-0.43257	-0.00021295	0.12251	6.0309E-05	-0.31007	-0.00015264	492.29090849460533	26.847	0.65829	26.834	26.374	27.032	-0.012983					33	15	4	0	0	0	0.68164	1	1397	1397		68.787	13.283	1	1004900			68211	8058	47874	47951	74026	74026					0.07523100631510715
RPKAYFSASI	10	Unmodified	_RPKAYFSASI_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.3117065429688	2	570.314023	1138.61349	-1.5412	-0.00087896	-2.4128	-0.0013761	-3.954	-0.002255	570.3125722023824	31.105	0.79323	31.105	30.797	31.591	0					57	18	4	0	0	0	0.94316	1	2049	2049		51.193	1.7511	1	1394400	+		68212	35379	47875	47952	74027	74027					0.04973120742943138
RPKAYFSASI	10	Unmodified	_RPKAYFSASI_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.3119506835938	2	570.314023	1138.61349	-0.41847	-0.00023866	-3.3666	-0.00192	-3.7851	-0.0021587	570.3120515125637	31.051	0.83362	31.063	30.75	31.583	0.011799					54	19	4	0	0	0	1.0236	1	2032	2032		42.864	2.0861	1	1408200	+		68213	35379	47875	47952	74028	74028					0.04973120742943138
RPKAYFSASI	10	Unmodified	_RPKAYFSASI_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	570.314023	1138.61349	-1.5412	-0.00087896	-2.4128	-0.0013761	-3.954	-0.002255	570.3125722023824	31.105	0.79323	31.105	30.797	31.591	0	0.085984	0.00056805	NaN	51.193	57	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1394400	+		68214	35379	47875	47952							0.04973120742943138
RPKAYFSASI	10	Unmodified	_RPKAYFSASI_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	570.314023	1138.61349	-0.41847	-0.00023866	-3.3666	-0.00192	-3.7851	-0.0021587	570.3120515125637	31.051	0.83362	31.063	30.75	31.583	0.011799	0.043154	-0.0005199	NaN	51.193	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1408200	+		68215	35379	47875	47952							0.04973120742943138
RPKAYFSASI	10	Unmodified	_RPKAYFSASI_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	570.314023	1138.61349	-1.0481	-0.00059775	-2.9188	-0.0016646	-3.9669	-0.0022624	570.3123056084825	30.816	0.98669	30.89	30.586	31.572	0.074314	-0.12914	-9.0271E-06	NaN	51.193	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1336400	+		68216	35379	47875	47952							0.04973120742943138
RPKDALRA	8	Unmodified	_RPKDALRA_					0	0	0		ENST00000424387.5_1_22:35695884-35743199:+|nuORF	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	ENST00000424387.5_1_22:35695884-35743199:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.7781677246094	2	463.780151	925.545748	0.203	9.4148E-05	-4.0168	-0.0018629	-3.8138	-0.0017688	463.7780408477903	32.874	0.84739	32.682	32.293	33.14	-0.19261					47	20	4	0	0	0	0.78609	1	2298	2298		60.294	4.7898	1	1084600			68217	14042	47876	47953	74029	74029					0.07999715602795732
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8035278320312	2	533.803823	1065.59309	-0.85138	-0.00045447	0.33026	0.0001763	-0.52112	-0.00027817	533.8040315812436	34.39	1.2023	34.39	33.816	35.018	0					88	30	5	0	0	0	0.26413	3	2555	2543;2555;2569		80.455	14.651	1	7162400			68218	9968	47877	47954	74030;74031;74032	74031					0.06291950083118536
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8037109375	2	533.803823	1065.59309	-0.40245	-0.00021483	-0.19872	-0.00010608	-0.60117	-0.00032091	533.803746771344	34.213	1.2035	34.209	33.79	34.993	-0.0045624					86	30	5	0	0	0	0.2101	3	2515	2503;2515;2529		87.696	26.724	1	7502400			68219	9968	47877	47954	74033;74034;74035	74034					0.06291950083118536
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8037109375	2	533.803823	1065.59309	-1.1927	-0.00063667	0.70232	0.0003749	-0.49038	-0.00026177	533.8042306240715	34.182	1.2473	34.232	33.844	35.091	0.050255					86	31	5	0	0	0	0.2508	3	2488	2464;2476;2488		82.241	15.811	1	6209200			68220	9968	47877	47954	74036;74037;74038	74038					0.06291950083118536
RPKDRVGL	8	Unmodified	_RPKDRVGL_					0	0	0		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;ENST00000515387.1_1_5:96232124-96244694:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF	nc|ENSG00000164308|Q6P179-3|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.78802490234375	2	470.787976	939.561398	-0.038275	-1.8019E-05	-0.83353	-0.00039242	-0.87181	-0.00041044	470.78764852719814	23.759	0.8595	23.759	23.482	24.341	0					62	19	5	0	0	0	0.77775	2	996	954;996		60.972	5.4677	1	12963000			68221	7258	47878	47955	74039;74040	74040					0.08920002119862147
RPKDRVGL	8	Unmodified	_RPKDRVGL_					0	0	0		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;ENST00000515387.1_1_5:96232124-96244694:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF	nc|ENSG00000164308|Q6P179-3|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.7876892089844	2	470.787976	939.561398	-0.40234	-0.00018942	-0.52319	-0.00024631	-0.92554	-0.00043573	470.78778156790446	23.768	0.82284	23.707	23.428	24.251	-0.06086					59	18	5	0	0	0	0.87148	2	974	950;974		53.351	3.3269	1	12702000			68222	7258	47878	47955	74041;74042	74042					0.08920002119862147
RPKDRVGL	8	Unmodified	_RPKDRVGL_					0	0	0		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;ENST00000515387.1_1_5:96232124-96244694:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF	nc|ENSG00000164308|Q6P179-3|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.7878723144531	2	470.787976	939.561398	0.34064	0.00016037	-1.2779	-0.00060161	-0.93724	-0.00044124	470.7874153199194	23.68	1.6132	23.757	23.476	25.089	0.076241					87	35	5	0	0	0	0.95679	1	928	928		44.117	3.3386	1	12786000			68223	7258	47878	47955	74043	74043					0.08920002119862147
RPKEGTSTL	9	Unmodified	_RPKEGTSTL_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.77398681640625	2	494.774731	987.534909	-0.60669	-0.00030018	1.239	0.00061302	0.6323	0.00031284	494.77586719633615	21.104	0.97571	21.104	20.562	21.537	0					41	19	4	0	0	0	0.094442	3	601	601;611;623		112.41	34.843	1	2393700			68224	729	47879	47956	74044;74045;74046	74044					0.04064268437866758
RPKEGTSTL	9	Unmodified	_RPKEGTSTL_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7742919921875	2	494.774731	987.534909	-0.39733	-0.00019659	1.1074	0.00054789	0.71003	0.0003513	494.7757772898421	21.206	0.86956	21.116	20.675	21.545	-0.090092					39	17	5	0	0	0	0.071379	3	608	608;619;633		120.87	35.509	1	2743400			68225	729	47879	47956	74047;74048;74049	74047					0.04064268437866758
RPKEGTSTL	9	Unmodified	_RPKEGTSTL_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7745056152344	2	494.774731	987.534909	0.23856	0.00011803	1.137	0.00056256	1.3756	0.0006806	494.7760034342217	21.092	0.92442	21.163	20.713	21.637	0.071487					40	18	5	0	0	0	0.094442	3	568	556;568;580		112.41	30.17	1	1437600			68226	729	47879	47956	74050;74051;74052	74051					0.04064268437866758
RPKENKGN	8	Unmodified	_RPKENKGN_					0	0	0		ENST00000546659.1_1_12:94620936-94621053:+|nuORF;ENSG00000136040|ENST00000258526|PLXNC1	ENST00000546659.1_1_12:94620936-94621053:+|nuORF	ENST00000546659.1_1_12:94620936-94621053:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7878112792969	2	471.759415	941.504277	-0.45379	-0.00021408	0.153	7.2178E-05	-0.30079	-0.0001419	471.759256565867	24	0.38775	23.953	23.656	24.044	-0.047148					12	8	2	0	0	0	0.027866	1	961	961		30.504	23.31	1	24695			68227	4973	47880	47957	74053	74053					0.03118534843474663
RPKEPGTK	8	Unmodified	_RPKEPGTK_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.P813Lfs*22|1|0.21|ENSG00000214655|chr10:73793708-73793708|C/-|frameshift_variant;ENST00000431225.5_1_10:75551812-75554405:+|nuORF	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.76995849609375	2	456.766709	911.518865	-0.87518	-0.00039975	0.78069	0.00035659	-0.09449	-4.316E-05	456.7669952824367	22.181	0.57887	22.255	21.931	22.51	0.073954					25	11	3	0	0	0	0.5947	1	731	731		76.774	0	1	718600			68228	10562	47881	47958	74054	74054					0.05956606991617264
RPKERDSELG	10	Unmodified	_RPKERDSELG_					0	0	0		ENST00000597853.5_1_19:49559435-49560608:-|nuORF	ENST00000597853.5_1_19:49559435-49560608:-|nuORF	ENST00000597853.5_1_19:49559435-49560608:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.808837890625	2	593.812376	1185.6102	-2.0367	-0.0012094	-3.9581	-0.0023504	-5.9948	-0.0035598	593.8101463873134	21.58	0.86597	21.58	21.146	22.012	0					65	17	5	0	0	0	0.69662	2	696	684;696		67.494	8.7443	1	3271200			68229	17458	47882	47959	74055;74056	74056					0.024818258982804764
RPKERDSELG	10	Unmodified	_RPKERDSELG_					0	0	0		ENST00000597853.5_1_19:49559435-49560608:-|nuORF	ENST00000597853.5_1_19:49559435-49560608:-|nuORF	ENST00000597853.5_1_19:49559435-49560608:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8092041015625	2	593.812376	1185.6102	-1.733	-0.0010291	-4.0533	-0.0024069	-5.7863	-0.003436	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	0.83673	3	798	777;798;833		58.23	8.6939	1	2217700			68230	17458	47882	47959	74057;74058;74059	74058					0.024818258982804764
RPKERQQAY	9	Unmodified	_RPKERQQAY_					0	0	0			REV__ENSG00000159840|ENST00000322764|ZYX	REV__ENSG00000159840|ENST00000322764|ZYX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	588.3175048828125	2	588.317628	1174.6207	-2.3467	-0.0013806	1.1379	0.00066946	-1.2087	-0.00071111	588.3186177881496	28.799	0.95712	28.799	28.49	29.447	0					73	23	4	0	0	0	0.32811	3	1710	1700;1710;1721		71.877	4.089	1	3041300	+		68231	25276	47883	47960	74060;74061;74062	74061					0.04037853343379538
RPKERQQAY	9	Unmodified	_RPKERQQAY_					0	0	0			REV__ENSG00000159840|ENST00000322764|ZYX	REV__ENSG00000159840|ENST00000322764|ZYX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	588.3174438476562	2	588.317628	1174.6207	-1.528	-0.00089893	0.34711	0.00020421	-1.1809	-0.00069472	588.3181271848159	28.779	0.96182	28.777	28.459	29.421	-0.0027485					88	23	5	0	0	0	0.32811	2	1705	1683;1705		71.877	18.526	1	2910900	+		68232	25276	47883	47960	74063;74064	74064					0.04037853343379538
RPKERQQAY	9	Unmodified	_RPKERQQAY_					0	0	0			REV__ENSG00000159840|ENST00000322764|ZYX	REV__ENSG00000159840|ENST00000322764|ZYX	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	588.317628	1174.6207	-2.3467	-0.0013806	1.1379	0.00066946	-1.2087	-0.00071111	588.3186177881496	28.799	0.95712	28.799	28.49	29.447	0	0.077705	0.0015228	NaN	71.877	73	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3041300	+		68233	25276	47883	47960							0.04037853343379538
RPKERQQAY	9	Unmodified	_RPKERQQAY_					0	0	0			REV__ENSG00000159840|ENST00000322764|ZYX	REV__ENSG00000159840|ENST00000322764|ZYX	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	588.317628	1174.6207	-1.528	-0.00089893	0.34711	0.00020421	-1.1809	-0.00069472	588.3181271848159	28.779	0.96182	28.777	28.459	29.421	-0.0027485	0.055284	0.00059227	NaN	71.877	88	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2910900	+		68234	25276	47883	47960							0.04037853343379538
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	605.8299560546875	2	605.830569	1209.64658	2.3972	0.0014523	-2.6235	-0.0015894	-0.2263	-0.0001371	605.8289087646085	17.573	0.54125	17.573	17.399	17.94	0					22	10	4	0	0	0	0.99657	1	195	195		46.457	6.3986	1	230220			68235	985	47884	47961	74065	74065					0.0501470279498335
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8307495117188	2	605.830569	1209.64658	0.048131	2.9159E-05	-0.40133	-0.00024314	-0.3532	-0.00021398	605.8302380939462	17.769	0.58827	17.627	17.407	17.995	-0.14278					22	11	3	0	0	0	0.75651	1	201	201		63.534	15.877	1	159290			68236	985	47884	47961	74066	74066					0.0501470279498335
RPKEWVRI	8	Unmodified	_RPKEWVRI_					0	0	0			REV__ENST00000524165.5_1_8:128806950-128808232:+|nuORF	REV__ENST00000524165.5_1_8:128806950-128808232:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3251342773438	2	542.324725	1082.6349	-1.1109	-0.00060247	0.42975	0.00023306	-0.68115	-0.0003694	542.3249715957542	45.502	1.1981	45.353	45.115	46.313	-0.1488					76	34	4	0	0	0	0.89627	1	4425	4425		51.335	3.4199	1	5443700	+		68237	34221	47885	47962	74067	74067					0.09688550562327691
RPKGDAAL	8	Unmodified	_RPKGDAAL_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.240478515625	2	414.240327	826.466101	-0.42915	-0.00017777	0.29961	0.00012411	-0.12954	-5.3659E-05	414.2403880218714	30.206	1.0244	30.206	29.692	30.717	0					74	24	5	0	0	0	0.87148	1	1938	1938		53.351	3.3269	1	4517700			68238	3859	47886	47963	74068	74068					0.045926489288035555
RPKKAEAL	8	Unmodified	_RPKKAEAL_					0	0	0			REV__ENSG00000134371|ENST00000367435|CDC73	REV__ENSG00000134371|ENST00000367435|CDC73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.784902	911.55525	-0.37365	-0.00017068	-1.9478	-0.00088972	-2.3214	-0.0010604	456.78360716735716	23.195	0.75314	23.134	22.889	23.643	-0.060862					23	17	2	0	0	0	0.027866	1	865	865		76.774	2.7994	1	80776	+		68239	23447	47887	47964	74069	74069					0.09593483888306764
RPKKLAVE	8	Unmodified	_RPKKLAVE_					0	0	0		ENSG00000108622|ENST00000579788|ICAM2;ENST00000580011.1_1_17:62082347-62097946:-|nuORF;ENST00000584403.5_1_17:62081411-62097970:-|nuORF	ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7879333496094	2	470.800552	939.58655	-0.041074	-1.9338E-05	0.72335	0.00034055	0.68228	0.00032122	470.80074332174866	23.715	0.30091	23.715	23.607	23.908	0					8	6	2	0	0	0	0.027866	1	971	971		29.15	7.1897	1	59281			68240	2919	47888	47965	74070	74070					0.11434056922416858
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.8008422851562	2	522.801083	1043.58761	-0.19488	-0.00010188	-0.95985	-0.00050181	-1.1547	-0.00060369	522.8009511128475	19.578	1.3907	19.578	19.218	20.609	0					110	28	6	0	0	0	0.033448	7	413	402;413;425;437;449;461;494		138.83	51.559	1	30252000			68241	18451	47889	47966	74071;74072;74073;74074;74075;74076;74077	74072					0.0675627129132863
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.8009643554688	2	522.801083	1043.58761	-0.44889	-0.00023468	-0.69181	-0.00036168	-1.1407	-0.00059636	522.8010160970391	19.827	1.7322	19.708	19.249	20.981	-0.11872					121	35	6	0	0	0	0.014013	10	433	422;433;445;457;469;481;493;507;520;533		166.78	69.31	1	24902000			68242	18451	47889	47966	74078;74079;74080;74081;74082;74083;74084;74085;74086;74087	74079					0.0675627129132863
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.801025390625	2	522.801083	1043.58761	1.9424	0.0010155	-3.0547	-0.001597	-1.1123	-0.00058149	522.799815846591	19.741	1.7117	19.807	19.438	21.15	0.066195					135	34	5	0	0	0	0.033448	11	400	389;400;412;424;436;448;460;473;486;500;535		138.83	64.309	1	23147000			68243	18451	47889	47966	74088;74089;74090;74091;74092;74093;74094;74095;74096;74097;74098	74089					0.0675627129132863
RPKKQELD	8	Unmodified	_RPKKQELD_					0	0	0			REV__nc|ENSG00000106341|O96001-2|PPP1R17	REV__nc|ENSG00000106341|O96001-2|PPP1R17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2921447753906	2	507.290548	1012.56654	-0.19931	-0.00010111	-0.29269	-0.00014848	-0.49199	-0.00024958	507.29028140352375	21.325	0.92149	21.397	21.057	21.978	0.071487					52	18	4	0	0	0	0.77775	1	618	618		60.972	0.67798	1	1018300	+		68244	21612	47890	47967	74099	74099					0.060762611917994036
RPKLIGEEL	9	Unmodified	_RPKLIGEEL_					0	0	0		ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3;ENST00000556274.5_1_14:92547307-92555106:-|nuORF;nc|ENSG00000066427|P54252-5|ATXN3	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.815673828125	2	527.816399	1053.61824	-1.6028	-0.00084597	1.5973	0.00084307	-0.0054973	-2.9016E-06	527.8166991341571	43.693	1.0818	43.693	43.404	44.485	0					78	30	5	0	0	0	0.22902	2	4102	4102;4113		85.161	19.358	1	4799400			68245	1340	47891	47968	74100;74101	74100					0.09358004885712035
RPKLIGEEL	9	Unmodified	_RPKLIGEEL_					0	0	0		ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3;ENST00000556274.5_1_14:92547307-92555106:-|nuORF;nc|ENSG00000066427|P54252-5|ATXN3	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.815185546875	2	527.816399	1053.61824	-1.2208	-0.00064438	1.1761	0.00062078	-0.044708	-2.3598E-05	527.8164721687165	43.902	1.1369	43.757	43.425	44.561	-0.14471					74	32	4	0	0	0	0.2101	2	4119	4119;4130		87.696	24.39	1	4836500			68246	1340	47891	47968	74102;74103	74102					0.09358004885712035
RPKLIGEEL	9	Unmodified	_RPKLIGEEL_					0	0	0		ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3;ENST00000556274.5_1_14:92547307-92555106:-|nuORF;nc|ENSG00000066427|P54252-5|ATXN3	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.81396484375	2	527.816399	1053.61824	-0.027735	-1.4639E-05	-0.66562	-0.00035133	-0.69336	-0.00036597	527.8158666338968	43.794	0.74448	43.825	43.522	44.266	0.030827					53	20	4	0	0	0	0.16638	2	4080	4057;4080		95.815	19.358	1	5237400			68247	1340	47891	47968	74104;74105	74105					0.09358004885712035
RPKLKNAS	8	Unmodified	_RPKLKNAS_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2823791503906	2	457.282526	912.550499	-0.11737	-5.3669E-05	-0.39073	-0.00017868	-0.5081	-0.00023235	457.2823220451727	34.819	1.2079	34.819	34.479	35.687	0					65	31	4	0	0	0	1.0106	1	2621	2621		35.618	0	1	8636700	+		68248	25256	47892	47969	74106	74106					0.09072599745547905
RPKLSGRSF	9	Unmodified	_RPKLSGRSF_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ZNRF3|p.S795Qfs*6|1|0.3|ENSG00000183579|chr22:29050557-29050558|-/G|frameshift_variant	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2870483398438	2	524.306532	1046.59851	-0.2714	-0.0001423	-1.0987	-0.00057606	-1.3701	-0.00071836	524.3057186703409	28.149	0.78245	28.23	27.832	28.615	0.080812					43	18	3	0	0	0	0.024319	1	1553	1553		31.53	0	1	325310			68249	9246	47893	47970	74107	74107					0.07707673665595394
RPKMPIVH	8	Unmodified	_RPKMPIVH_					0	0	0		ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2	ENSG00000163513|ENST00000295754|TGFBR2	ENSG00000163513|ENST00000295754|TGFBR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.26947021484375	2	489.289297	976.564041	1.7822	0.00087201	2.0263	0.00099146	3.8085	0.0018635	489.2901396942295	18.923	1.2294	18.923	18.038	19.268	0					53	24	3	0	0	0	0.027866	1	321	321		33.516	1.5607	1	263340			68250	7092	47894	47971	74108	74108					0.07482134253154982
RPKPPSATSI	10	Unmodified	_RPKPPSATSI_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3060302734375	2	527.306198	1052.59784	-1.0795	-0.00056922	0.52972	0.00027932	-0.54976	-0.00028989	527.306466766084	31.929	1.6965	31.929	30.797	32.494	0					113	41	4	0	0	0	0.090646	4	2172	2151;2160;2172;2185		138.06	39.433	1	5012100			68251	3025	47895	47972	74109;74110;74111;74112	74111					0.07364834225904815
RPKPPSATSI	10	Unmodified	_RPKPPSATSI_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3057861328125	2	527.306198	1052.59784	-0.59429	-0.00031337	0.037815	1.994E-05	-0.55647	-0.00029343	527.3061804957447	31.791	1.9597	31.802	30.709	32.669	0.011797					119	48	4	0	0	0	0.040557	4	2126	2116;2126;2138;2150		150.36	28.186	1	4930700			68252	3025	47895	47972	74113;74114;74115;74116	74114					0.07364834225904815
RPKPPSATSI	10	Unmodified	_RPKPPSATSI_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3060913085938	2	527.306198	1052.59784	-0.20663	-0.00010896	-0.32578	-0.00017179	-0.53242	-0.00028075	527.305979578546	31.596	1.8134	31.665	30.621	32.434	0.06896					118	44	4	0	0	0	0.040557	4	2068	2048;2057;2068;2081		150.36	40.242	1	4808300			68253	3025	47895	47972	74117;74118;74119;74120	74119					0.07364834225904815
RPKPSNGVL	9	Unmodified	_RPKPSNGVL_					0	0	0		nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2879638671875	2	484.287808	966.561064	-0.69221	-0.00033523	0.347	0.00016805	-0.34521	-0.00016718	484.28791506775644	25.032	1.2157	25.032	24.741	25.957	0					58	28	4	0	0	0	0.247	3	1159	1136;1146;1159		82.75	13.964	1	2750300			68254	8643	47896	47973	74121;74122;74123	74123					0.07644582400007494
RPKPSNGVL	9	Unmodified	_RPKPSNGVL_					0	0	0		nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.28839111328125	2	484.287808	966.561064	-1.1006	-0.00053299	0.75802	0.0003671	-0.34254	-0.00016589	484.28812241216536	25.093	0.78476	25.059	24.771	25.556	-0.034395					48	18	4	0	0	0	0.086035	3	1131	1131;1142;1155		115.49	24.717	1	2843200			68255	8643	47896	47973	74124;74125;74126	74124					0.07644582400007494
RPKPSNGVL	9	Unmodified	_RPKPSNGVL_					0	0	0		nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2877197265625	2	484.287808	966.561064	-0.071997	-3.4867E-05	-0.27311	-0.00013226	-0.3451	-0.00016713	484.28762633063553	24.994	1.0131	25.073	24.777	25.79	0.078447					50	23	4	0	0	0	0.17845	2	1091	1081;1091		93.143	34.361	1	2832600			68256	8643	47896	47973	74127;74128	74128					0.07644582400007494
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	607.8483276367188	2	607.84823	1213.68191	-0.72944	-0.00044339	0.42197	0.00025649	-0.30748	-0.0001869	607.8484786681868	42.121	1.1739	42.121	41.793	42.967	0					105	33	5	0	0	0	0.11127	4	3833	3833;3841;3854;3866		112.11	54.477	1	9867300			68257	9954	47897	47974	74129;74130;74131;74132	74129					0.0836136532279852
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	607.8477172851562	2	607.84823	1213.68191	-0.42326	-0.00025728	0.18438	0.00011208	-0.23887	-0.0001452	607.8483343135479	42.299	1.2452	42.167	41.825	43.07	-0.13219					102	35	5	0	0	0	0.29678	3	3848	3848;3860;3874		91.265	41.729	1	9222200			68258	9954	47897	47974	74133;74134;74135	74133					0.0836136532279852
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	607.848388671875	2	607.84823	1213.68191	-1.2021	-0.00073072	0.96156	0.00058448	-0.24058	-0.00014624	607.8488078919536	42.245	1.1139	42.271	41.928	43.042	0.026012					102	31	5	0	0	0	0.29678	4	3800	3800;3809;3822;3836		91.265	53.049	1	9368800			68259	9954	47897	47974	74136;74137;74138;74139	74136					0.0836136532279852
RPKQKVTG	8	Unmodified	_RPKQKVTG_					0	0	0			REV__ENST00000530083.1_1_11:777645-783680:+|nuORF	REV__ENST00000530083.1_1_11:777645-783680:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.28253173828125	2	457.282526	912.550499	-0.32332	-0.00014785	0.23185	0.00010602	-0.091467	-4.1826E-05	457.28249716074674	34.66	0.73167	34.453	34.16	34.892	-0.20696					48	17	4	0	0	0	1.0009	1	2569	2569		37.159	3.6435	1	2338600	+		68260	34528	47898	47975	74140	74140					0.09072599745570642
RPKRASTL	8	Unmodified	_RPKRASTL_					0	0	0			REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF	REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2564392089844	2	464.787976	927.561398	1.0275	0.00047759	-3.2514	-0.0015112	-2.2238	-0.0010336	464.7858393850795	58.937	0.28479	59.022	58.921	59.206	0.085686					10	7	2	0	0	0	0.027866	1	6644	6644		19.36	0	1	99807	+		68261	31519	47899	47976	74141	74141					0.0947200211985546
RPKRGVGL	8	Unmodified	_RPKRGVGL_					0	0	0		ENST00000251101.11_1_18:691232-697243:-|nuORF;nc|ENSG00000132199|Q7L5Y1-3|ENOSF1	ENST00000251101.11_1_18:691232-697243:-|nuORF	ENST00000251101.11_1_18:691232-697243:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.78533935546875	2	441.785236	881.555919	0.26686	0.00011789	0.17752	7.8426E-05	0.44438	0.00019632	441.78514086300294	18.908	0.63834	18.779	18.403	19.042	-0.12906					28	12	3	0	0	0	0.81662	1	317	317		57.811	13.28	1	104770			68262	11350	47900	47977	74142	74142					0.11040323328040813
RPKRGVGL	8	Unmodified	_RPKRGVGL_					0	0	0		ENST00000251101.11_1_18:691232-697243:-|nuORF;nc|ENSG00000132199|Q7L5Y1-3|ENOSF1	ENST00000251101.11_1_18:691232-697243:-|nuORF	ENST00000251101.11_1_18:691232-697243:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	441.785236	881.555919	3.6137	0.0015965	-3.2636	-0.0014418	0.35008	0.00015466	441.7836410489759	18.901	0.63931	18.965	18.599	19.239	0.063307	0.14655	-0.0014698	NaN	57.811	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141870			68263	11350	47900	47977							0.11040323328040813
RPKRLTVGI	9	Unmodified	_RPKRLTVGI_					0	0	0			REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF	REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3400268554688	2	520.340375	1038.6662	-0.85582	-0.00044532	0.41179	0.00021427	-0.44403	-0.00023104	520.3404255871862	23.102	0.75929	23.102	22.848	23.607	0					42	17	3	0	0	0	0.70186	1	871	871		45.952	5.3793	1	946820	+		68264	33771	47901	47978	74143	74143					0.14841123596420402
RPKRLTVGI	9	Unmodified	_RPKRLTVGI_					0	0	0			REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF	REV__ENST00000493772.5_1_20:62372637-62374340:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3399047851562	2	520.340375	1038.6662	-0.5796	-0.00030159	0.04462	2.3218E-05	-0.53498	-0.00027837	520.3402579855747	23.094	0.84715	23.033	22.753	23.6	-0.060862					52	19	4	0	0	0	0.94809	1	869	869		29.15	2.3535	1	891850	+		68265	33771	47901	47978	74144	74144					0.14841123596420402
RPKRTVPE	8	Unmodified	_RPKRTVPE_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7941589355469	2	491.793258	981.571963	-0.55303	-0.00027198	0.69549	0.00034204	0.14246	7.0059E-05	491.7935143111037	28.977	1.4142	28.98	28.337	29.751	0.0031376					55	34	2	0	0	0	0.87148	1	1720	1720		53.351	2.1588	1	1746500	+		68266	26684	47902	47979	74145	74145					0.08043984774269575
RPKSELPLK	9	Unmodified	_RPKSELPLK_					0	0	0		nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2;ENSG00000147166|ENST00000373829|ITGB1BP2	nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.3319091796875	2	534.332216	1066.64988	-0.82039	-0.00043836	0.16124	8.6156E-05	-0.65915	-0.0003522	534.3322145008419	44.262	0.96376	44.299	43.959	44.923	0.0369					67	27	4	0	0	0	0.29158	1	4142	4142		76.774	5.9579	1	6800200			68267	5943	47903	47980	74146	74146					0.11921997639660731
RPKSGLNI	8	Unmodified	_RPKSGLNI_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.25897216796875	2	442.769252	883.52395	-0.53741	-0.00023795	0.73132	0.00032381	0.19391	8.5859E-05	442.76940840019944	23.683	0.42945	23.622	23.47	23.899	-0.060862					11	9	2	0	0	0	0.027866	1	928	928		24.203	0	1	59161	+		68268	28456	47904	47981	74147	74147					0.07752910854230777
RPKSLPKPPSN	11	Unmodified	_RPKSLPKPPSN_					0	0	0			REV__nc|ENSG00000130816|P26358|DNMT1	REV__nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.7528991699219	3	407.575178	1219.70371	0.39993	0.000163	-0.44324	-0.00018065	-0.043313	-1.7653E-05	407.5749053115851	44.798	0.95838	44.798	44.417	45.375	0					84	27	4	0	0	0	0.024735	1	4384	4384		21.78	2.5177	1	1323400	+		68269	23159	47905	47982	74148	74148					0.10264170071354783
RPKSNIAVE	9	Unmodified	_RPKSNIAVE_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-6|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2915954589844	2	507.290548	1012.56654	-0.49919	-0.00025324	-0.35016	-0.00017763	-0.84935	-0.00043087	507.29023521787514	21.473	0.81574	21.383	21.059	21.875	-0.090092					51	16	4	0	0	0	0.37611	1	656	656		67.494	14.557	1	1051100			68270	18210	47906	47983	74149	74149					0.06076261191810772
RPKSRSNI	8	Unmodified	_RPKSRSNI_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|228|2|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|228|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.8118591308594	2	479.283057	956.551562	0.36928	0.00017699	3.977	0.0019061	4.3463	0.0020831	479.28484641140676	57.241	0.52891	57.241	57.038	57.567	0					18	13	2	0	0	0	0.027866	1	6454	6454		17.365	0	1	371820	+		68271	36123	47907	47984	74150	74150					0.0715481411446035
RPKSSTMLF	9	Unmodified	_RPKSSTMLF_					0	0	0			REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7916259765625	2	533.789327	1065.5641	1.6266	0.00086825	3.2109	0.001714	4.8375	0.0025822	533.7908980514418	19.78	1.121	19.846	19.488	20.609	0.066195					55	22	4	0	0	0	0.55828	1	414	414		55.504	0.72789	1	470660	+		68272	36973	47908	47985	74151	74151					0.03394089462494776
RPKTEAQAM	9	Oxidation (M)	_RPKTEAQAM(Oxidation (M))_		RPKTEAQAM(1)		RPKTEAQAM(88)	0	0	1		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2662353515625	2	524.266216	1046.51788	2.8325	0.001485	-2.8386	-0.0014882	-0.0061524	-3.2255E-06	524.2645308269991	16.879	0.44917	16.879	16.752	17.201	0					25	11	3	0	0	0	0.20652	1	103	103		88.177	19.692	1	170480			68273	6661	47909	47986	74152	74152		275			-0.0035197543961658084
RPKTSTTL	8	Unmodified	_RPKTSTTL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2680969238281	2	452.266542	902.51853	-0.52137	-0.0002358	0.61189	0.00027674	0.090519	4.0939E-05	452.26664987437636	21.171	0.59098	21.171	20.9	21.491	0					29	11	3	0	0	0	0.47665	1	626	626		87.754	2.3948	1	352790			68274	2990	47910	47987	74153	74153					0.06337187271753919
RPKTSTTL	8	Unmodified	_RPKTSTTL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2686462402344	2	452.266542	902.51853	-0.21792	-9.8556E-05	0.069616	3.1485E-05	-0.1483	-6.7071E-05	452.2664905949736	21.275	0.5407	21.185	20.911	21.452	-0.090092					26	10	3	0	0	0	0.74904	2	629	629;641		63.306	22.528	1	391490			68275	2990	47910	47987	74154;74155	74154					0.06337187271753919
RPKTSTTL	8	Unmodified	_RPKTSTTL_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2668762207031	2	452.266542	902.51853	0.27231	0.00012316	-0.13053	-5.9033E-05	0.14179	6.4125E-05	452.2663405901574	21.158	0.67816	21.23	20.959	21.637	0.071487					30	13	3	0	0	0	0.29644	2	576	576;588		113.41	14.037	1	340810			68276	2990	47910	47987	74156;74157	74156					0.06337187271753919
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.247314453125	3	400.247062	1197.71936	0.6522	0.00026104	-0.67062	-0.00026841	-0.018423	-7.3737E-06	400.2467718042326	33.001	0.74602	33.001	32.642	33.388	0					61	19	5	0	0	0	0.78438	1	2330	2330		61.691	24.183	1	3310800			68277	7803	47911	47988	74158	74158					0.12840456588423876
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.247314453125	3	400.247062	1197.71936	-0.044226	-1.7701E-05	0.099454	3.9806E-05	0.055228	2.2105E-05	400.24706216429007	32.856	1.2826	32.862	32.518	33.801	0.0066261					87	34	4	0	0	0	0.65479	1	2297	2297		70.816	33.308	1	3190500			68278	7803	47911	47988	74159	74159					0.12840456588423876
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	IRF2BP2|p.P369Gfs*24|1|0.17|ENSG00000168264|chr1:234607796-234607797|-/CC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.2474365234375	3	400.247062	1197.71936	3.04	0.0012167	-3.067	-0.0012275	-0.027021	-1.0815E-05	400.2457787940228	32.762	1.4376	32.825	32.54	33.977	0.062885					100	37	5	0	0	0	0.96069	1	2256	2256		50.034	13.716	1	2661900			68279	7803	47911	47988	74160	74160					0.12840456588423876
RPKVPDQSV	9	Unmodified	_RPKVPDQSV_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2911987304688	2	513.290548	1024.56654	-0.5656	-0.00029032	-0.59607	-0.00030596	-1.1617	-0.00059627	513.2900240980424	28.484	0.84949	28.48	28.157	29.006	-0.0042019					42	19	3	0	0	0	0.28047	1	1655	1655		78.264	12.798	1	1308300			68280	5411	47912	47989	74161	74161					0.055242611917947215
RPKVPDQSV	9	Unmodified	_RPKVPDQSV_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.290548	1024.56654	-1.1698	-0.00060047	0.20651	0.000106	-0.96333	-0.00049447	513.290392284083	28.522	0.79873	28.522	28.274	29.073	0	0.086391	0.00040854	NaN	78.264	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1413400			68281	5411	47912	47989							0.055242611917947215
RPKVPDQSV	9	Unmodified	_RPKVPDQSV_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.290548	1024.56654	-0.58509	-0.00030032	-0.24334	-0.0001249	-0.82843	-0.00042523	513.2901467230143	28.224	0.74688	28.305	28.08	28.826	0.080811	-0.13055	-5.3263E-05	NaN	78.264	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1414500			68282	5411	47912	47989							0.055242611917947215
RPLACMATL	9	Unmodified	_RPLACMATL_					0	0	0		ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.25775146484375	2	488.259348	974.504143	-1.0127	-0.00049444	0.82708	0.00040383	-0.18558	-9.061E-05	488.25935886163956	22.881	0.72828	22.955	22.745	23.474	0.073954					33	16	3	0	0	0	0.62163	1	800	800		51.335	5.3835	1	371690			68283	17334	47913	47990	74162	74162					0.01587075527606885
RPLAIPLL	8	Unmodified	_RPLAIPLL_					0	0	0			REV__ENST00000550554.5_1_14:105955152-105957428:+|nuORF	REV__ENST00000550554.5_1_14:105955152-105957428:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.8028564453125	2	446.802563	891.590573	0.68138	0.00030444	-0.44614	-0.00019934	0.23523	0.0001051	446.80223042312	71.96	0.86406	71.672	71.39	72.254	-0.28857					58	22	4	0	0	0	0.75307	1	8716	8716		62.978	0	1	1673700	+		68284	34909	47914	47991	74163	74163					0.14044146416131298
RPLAKRLF	8	Unmodified	_RPLAKRLF_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.82379150390625	2	500.824361	999.634169	-0.34832	-0.00017445	-0.44103	-0.00022088	-0.78935	-0.00039532	500.8240276331338	33.584	1.4557	33.584	33.251	34.706	0					109	37	4	0	0	0	0.93274	1	2455	2455		47.916	10.887	1	2682000	+		68285	22186	47915	47992	74164	74164					0.13433755913263212
RPLAKRLF	8	Unmodified	_RPLAKRLF_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8241271972656	2	500.824361	999.634169	-0.50003	-0.00025043	-0.1053	-5.2739E-05	-0.60533	-0.00030316	500.8241691086277	33.451	1.8159	33.457	33.117	34.933	0.0066261					106	45	4	0	0	0	0.97924	2	2422	2422;2435		40.573	3.5441	1	2197800	+		68286	22186	47915	47992	74165;74166	74165					0.13433755913263212
RPLAKTCF	8	Unmodified	_RPLAKTCF_					0	0	0		nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2	nc|ENSG00000063241|Q96AB3-2|ISOC2	nc|ENSG00000063241|Q96AB3-2|ISOC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.26025390625	2	468.260205	934.505857	0.69365	0.00032481	-0.60763	-0.00028453	0.08602	4.028E-05	468.2599703843451	24.031	2.7749	24.109	23.353	26.127	0.078047					156	63	5	0	0	0	1.0239	1	1009	1009		33.516	0	1	728920			68287	18058	47916	47993	74167	74167					0.0359845260786642
RPLALSQV	8	Unmodified	_RPLALSQV_					0	0	0			REV__VIT|p.S125A|1|0.15|ENSG00000205221|chr2:36755018-36755018|T/G|missense_variant	REV__VIT|p.S125A|1|0.15|ENSG00000205221|chr2:36755018-36755018|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2588806152344	2	442.271627	882.528701	-0.869	-0.00038433	-1.2597	-0.00055711	-2.1287	-0.00094145	442.2717986653707	27.144	0.43257	27.226	27.031	27.463	0.081293					25	11	4	0	0	0	0.027866	1	1420	1420		49.442	0	1	667760	+		68288	37776	47917	47994	74168	74168					0.08273794996989636
RPLALSQV	8	Unmodified	_RPLALSQV_					0	0	0			REV__VIT|p.S125A|1|0.15|ENSG00000205221|chr2:36755018-36755018|T/G|missense_variant	REV__VIT|p.S125A|1|0.15|ENSG00000205221|chr2:36755018-36755018|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2588806152344	2	442.271627	882.528701	-0.76372	-0.00033777	1.4333	0.00063389	0.66954	0.00029612	442.27191229865554	27.277	0.32608	27.358	27.245	27.571	0.081293					13	8	2	0	0	0	0.027866	1	1420	1420		49.442	0	1	351650	+		68289	37776	47917	47994	74169	74169					0.08273794996989636
RPLAMHGPV	9	Oxidation (M)	_RPLAM(Oxidation (M))HGPV_		RPLAM(1)HGPV		RPLAM(63)HGPV	0	0	1			REV__nc|ENSG00000075426|P15408-2|FOSL2	REV__nc|ENSG00000075426|P15408-2|FOSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2685241699219	2	497.268561	992.52257	-0.35959	-0.00017881	-0.29125	-0.00014483	-0.65083	-0.00032364	497.26837861192877	36.109	3.0502	36.147	35.652	38.702	0.038044					198	83	4	0	0	0	0.44472	1	2819	2819		62.978	10.679	1	12565000	+		68290	36470	47918	47995	74170	74170		966			0.02600953493833913
RPLAPAACI	9	Unmodified	_RPLAPAACI_					0	0	0		nc|ENSG00000196243|Q96LM1|LINC00615	nc|ENSG00000196243|Q96LM1|LINC00615	nc|ENSG00000196243|Q96LM1|LINC00615	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.26190185546875	2	456.260205	910.505857	2.3598	0.0010767	1.6315	0.00074439	3.9913	0.0018211	456.260877513281	18.767	0.73769	18.767	18.48	19.218	0					41	14	4	0	0	0	0.75282	1	319	319		42.474	5.446	1	815010			68291	18620	47919	47996	74171	74171					0.04702452607864416
RPLARPGPF	9	Unmodified	_RPLARPGPF_					0	0	0			REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.7957458496094	2	505.798343	1009.58213	-1.0948	-0.00055374	-2.8636	-0.0014484	-3.9584	-0.0020021	505.7967518809019	21.072	0.73614	21.072	20.801	21.537	0					30	14	3	0	0	0	0.70186	2	615	615;627		45.952	4.3467	1	251410	+		68292	30200	47920	47997	74172;74173	74172					0.0777259249952067
RPLARPGPF	9	Unmodified	_RPLARPGPF_					0	0	0			REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7956848144531	2	505.798343	1009.58213	0.21873	0.00011063	-4.1479	-0.002098	-3.9292	-0.0019874	505.79609201865884	21.091	0.63831	21.162	20.86	21.499	0.071487					28	12	3	0	0	0	0.67308	1	583	583		47.916	1.9636	1	223920	+		68293	30200	47920	47997	74174	74174					0.0777259249952067
RPLARPGPF	9	Unmodified	_RPLARPGPF_					0	0	0			REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.798343	1009.58213	-0.53159	-0.00026888	-3.5766	-0.001809	-4.1082	-0.0020779	505.7964344454815	21.175	0.68515	21.085	20.814	21.499	-0.090092	-0.021514	-0.00012051	NaN	47.916	37	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277720	+		68294	30200	47920	47997							0.0777259249952067
RPLARPGPF	9	Unmodified	_RPLARPGPF_					0	0	0			REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	REV__ENST00000311148.8_1_14:74004058-74004349:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	505.798343	1009.58213	0.21873	0.00011063	-4.1479	-0.002098	-3.9292	-0.0019874	505.79609201865884	21.091	0.63831	21.162	20.86	21.499	0.071487	0.055729	-0.00069845	NaN	47.916	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223920	+		68295	30200	47920	47997							0.0777259249952067
RPLARPPRQ	9	Unmodified	_RPLARPPRQ_					0	0	0		ENST00000262577.5_1_8:144519846-144520068:-|nuORF	ENST00000262577.5_1_8:144519846-144520068:-|nuORF	ENST00000262577.5_1_8:144519846-144520068:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.8115234375	2	545.833249	1089.65194	-0.8657	-0.00047253	-0.021649	-1.1817E-05	-0.88734	-0.00048434	545.8347703559062	46.558	0.5409	46.61	46.408	46.949	0.051395					32	14	4	0	0	0	0.024294	1	4582	4582		55.504	16.698	1	311340			68296	11508	47921	47998	74175	74175					0.11070471168113727
RPLARSSP	8	Unmodified	_RPLARSSP_					0	0	0		ENSG00000176679|ENST00000321217|TGIF2LY	ENSG00000176679|ENST00000321217|TGIF2LY	ENSG00000176679|ENST00000321217|TGIF2LY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.259033203125	2	442.259051	882.503549	-0.32954	-0.00014574	-1.6067	-0.00071059	-1.9363	-0.00085633	442.25921411796867	27.412	2.4538	27.412	26.324	28.778	0					149	61	3	0	0	0	0.93437	1	1470	1470		47.657	5.2612	1	58226000			68297	8659	47922	47999	74176	74176					0.05759740194423557
RPLAVWPLA	9	Unmodified	_RPLAVWPLA_					0	0	0			REV__ENST00000508276.1_1_4:2933242-2933551:-|nuORF	REV__ENST00000508276.1_1_4:2933242-2933551:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.795654296875	2	511.810919	1021.60729	-0.84048	-0.00043017	-2.6691	-0.0013661	-3.5096	-0.0017962	511.8086321992444	21.795	0.81273	21.795	21.293	22.106	0					40	16	3	0	0	0	0.024466	1	727	727		33.516	0	1	119910	+		68298	34062	47923	48000	74177	74177					0.09734647302082067
RPLCHGQRL	9	Unmodified	_RPLCHGQRL_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.298095703125	2	540.298185	1078.58182	-1.496	-0.00080829	1.2193	0.00065877	-0.27673	-0.00014952	540.2987705790721	21.734	1.4296	21.806	21.546	22.975	0.071487					69	29	4	0	0	0	0.75397	1	686	686		42.396	13.247	1	1298200	+		68299	23894	47924	48001	74178	74178					0.04566849508000814
RPLCPYLKA	9	Unmodified	_RPLCPYLKA_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MSMS	OPSCC_40_ClassI_Rep-2	5	530.797607421875	2	530.802237	1059.58992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.511	1	97.388	96.888	97.888	-0.12368								0	0	0	0.56622	1	12072	12072		44.117	1.7207	1				68300	8413	47925	48002	74179	74179					0.06250983704740065
RPLCRQVN	8	Carbamidomethyl (C)	_RPLC(Carbamidomethyl (C))RQVN_	RPLC(1)RQVN		RPLC(68)RQVN		0	1	0		ENST00000370651.5_1_6:64286399-64286450:+|nuORF	ENST00000370651.5_1_6:64286399-64286450:+|nuORF	ENST00000370651.5_1_6:64286399-64286450:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7804565429688	2	521.782367	1041.55018	-0.41412	-0.00021608	-2.9374	-0.0015327	-3.3515	-0.0017488	521.7806462497466	85.661	1.2711	85.604	85.27	86.541	-0.05761					73	29	4	0	0	0	0.68535	1	10708	10708		68.485	9.7027	1	2172600			68301	12967	47926	48003	74180	74180	175				0.031068567540614822
RPLEKLLRA	9	Unmodified	_RPLEKLLRA_					0	0	0			REV__GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	REV__GIPC1|p.K216Sfs*8|1|0.05|ENSG00000123159|chr19:14480315-14480316|-/CGAGGCTC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.33544921875	2	548.353483	1094.69241	-0.55357	-0.00030355	-2.6096	-0.001431	-3.1631	-0.0017345	548.3510051508321	43.651	0.14214	43.682	43.558	43.7	0.030827					5	3	2	0	0	0	0.024209	1	4027	4027		76.774	21.998	1	80333	+		68302	22681	47927	48004	74181	74181					0.14885392767882877
RPLEPAGRLG	10	Unmodified	_RPLEPAGRLG_					0	0	0			REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	REV__ENST00000415557.1_1_10:90750861-90751086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7913818359375	2	533.311815	1064.60908	-0.69114	-0.00036859	0.17543	9.3557E-05	-0.51571	-0.00027503	533.3116995588556	19.995	0.37918	19.89	19.7	20.079	-0.10477					19	7	4	0	0	0	0.03519	1	460	460		30.318	7.2752	1	92586	+		68303	32057	47928	48005	74182	74182					0.07935656320023554
RPLFDLVK	8	Unmodified	_RPLFDLVK_					0	0	0			REV__ENST00000261739.8_1_12:110477068-110477323:+|nuORF	REV__ENST00000261739.8_1_12:110477068-110477323:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77630615234375	2	494.302927	986.591301	-0.26466	-0.00013082	3.6367	0.0017976	3.372	0.0016668	494.3053047440129	52.276	0.40541	52.368	52.16	52.565	0.091938					14	9	2	0	0	0	0.027866	1	5527	5527		40.573	0	1	93250	+		68304	29635	47929	48006	74183	74183					0.09746941065179726
RPLFDLVK	8	Unmodified	_RPLFDLVK_					0	0	0			REV__ENST00000261739.8_1_12:110477068-110477323:+|nuORF	REV__ENST00000261739.8_1_12:110477068-110477323:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.302927	986.591301	-0.17765	-8.7815E-05	5.4926	0.002715	5.315	0.0026272	494.3052253629681	52.347	0.3602	52.163	52.035	52.395	-0.18404	-0.10236	0.0009743	NaN	31.955	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95977	+		68305	29635	47929	48006							0.09746941065179726
RPLFRQGF	8	Unmodified	_RPLFRQGF_					0	0	0			REV__nc|ENSG00000284730|P0DPE3|TMDD1	REV__nc|ENSG00000284730|P0DPE3|TMDD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.93408203125	2	510.790518	1019.56648	0.1666	8.5098E-05	0.46556	0.0002378	0.63216	0.0003229	510.7910962120134	18.66	0.74148	18.456	18.163	18.904	-0.20371					20	14	2	0	0	0	0.027866	1	361	361		35.201	0	1	22459	+		68306	37211	47930	48007	74184	74184					0.057483059824676275
RPLFRQGF	8	Unmodified	_RPLFRQGF_					0	0	0			REV__nc|ENSG00000284730|P0DPE3|TMDD1	REV__nc|ENSG00000284730|P0DPE3|TMDD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.790518	1019.56648	2.896	0.0014793	-0.64458	-0.00032924	2.2515	0.00115	510.78990532392015	18.315	1.0441	18.072	17.776	18.82	-0.24256	-0.19178	-0.00023234	NaN	26.796	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24326	+		68307	37211	47930	48007							0.057483059824676275
RPLGHSPAD	9	Unmodified	_RPLGHSPAD_					0	0	0		nc|ENSG00000229715|Q658K8|EEF1DP3	nc|ENSG00000229715|Q658K8|EEF1DP3	nc|ENSG00000229715|Q658K8|EEF1DP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.7729187011719	2	475.246141	948.477728	0.48759	0.00023172	-1.1746	-0.00055821	-0.68699	-0.00032649	475.2456518612388	23.673	0.50589	23.673	23.36	23.866	0					18	11	2	0	0	0	0.024477	1	914	914		44.117	9.9443	1	83322			68308	18742	47931	48008	74185	74185					0.0014284595213212015
RPLGKAASL	9	Unmodified	_RPLGKAASL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046592-184046874:+|nuORF;ENST00000464548.1_1_3:184046470-184049185:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.25909423828125	2	456.784902	911.55525	-0.25037	-0.00011437	0.17429	7.9612E-05	-0.076085	-3.4754E-05	456.78483100090375	27.835	0.88144	27.916	27.571	28.453	0.081291					58	21	4	0	0	0	0.024319	1	1524	1524		66.429	13.078	1	1037600			68309	3392	47932	48009	74186	74186					0.09593483888306764
RPLGPRAS	8	Unmodified	_RPLGPRAS_					0	0	0			REV__ENST00000372425.8_1_1:43919330-43919504:-|nuORF	REV__ENST00000372425.8_1_1:43919330-43919504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2539367675781	2	427.253769	852.492984	-0.58472	-0.00024982	0.18764	8.0168E-05	-0.39709	-0.00016966	427.2539224512093	23.349	2.0442	23.288	22.52	24.564	-0.06086					112	46	4	0	0	0	0.71833	1	919	919		65.803	10.299	1	17423000	+		68310	31204	47933	48010	74187	74187					0.0608375753998871
RPLGPSAGLP	10	Unmodified	_RPLGPSAGLP_					0	0	0			REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.78369140625	2	482.782359	963.550165	-1.007	-0.00048618	-0.21517	-0.00010388	-1.2222	-0.00059006	482.78243106264523	30.295	1.0418	30.37	30.003	31.045	0.074314					39	24	2	0	0	0	0.64538	1	1894	1894		71.877	14.066	1	3086400	+		68311	21405	47934	48011	74188	74188					0.06693180025706624
RPLGSGAPE	9	Unmodified	_RPLGSGAPE_					0	0	0		COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant;ENST00000479501.5_1_20:61926459-61943880:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.25909423828125	2	442.235242	882.45593	-0.84929	-0.00037559	-1.5868	-0.00070175	-2.4361	-0.0010773	442.23614162168303	27.179	0.72841	27.261	26.629	27.357	0.081293					32	18	3	0	0	0	0.023635	1	1355	1355		47.657	13.485	1	213830			68312	470	47935	48012	74189	74189					0.010000412035651607
RPLGSGAPE	9	Unmodified	_RPLGSGAPE_					0	0	0		COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant;ENST00000479501.5_1_20:61926459-61943880:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	COL20A1|p.L377Sfs*9|1|0.27|ENSG00000101203|chr20:63309779-63309779|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.235242	882.45593	-0.84956	-0.0003757	-2.3702	-0.0010482	-3.2198	-0.0014239	442.2344024774898	27.634	0.21047	27.466	27.359	27.57	-0.16816	0.10284	-0.00028032	NaN	47.657	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40636			68313	470	47935	48012							0.010000412035651607
RPLHCPYL	8	Unmodified	_RPLHCPYL_					0	0	0			REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF	REV__ENST00000463516.5_1_7:45003626-45005995:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7740173339844	2	499.765655	997.516756	-0.82907	-0.00041434	-0.66135	-0.00033052	-1.4904	-0.00074486	499.76578090111997	27.137	1.1901	27.218	26.456	27.646	0.081293					47	30	2	0	0	0	0.027866	1	1343	1343		29.842	0	1	89000	+		68314	32939	47936	48013	74190	74190					0.01789854982155248
RPLHDRLRAY	10	Unmodified	_RPLHDRLRAY_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4	REV__ENSG00000187855|ENST00000342331|ASCL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.9154968261719	3	432.914305	1295.72109	-0.4273	-0.00018498	2.1362	0.0009248	1.7089	0.00073982	432.91552546228326	32.656	1.4571	32.656	32.03	33.487	0					129	38	6	0	0	0	1.1237	1	2299	2299		29.551	0.97402	1	7053900	+		68315	27984	47937	48014	74191	74191					0.08505510397026228
RPLHDRLRAY	10	Unmodified	_RPLHDRLRAY_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4	REV__ENSG00000187855|ENST00000342331|ASCL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.915283203125	3	432.914305	1295.72109	0.22014	9.5302E-05	1.4832	0.00064212	1.7034	0.00073742	432.9152180112777	32.377	1.8554	32.44	31.961	33.817	0.062889					134	48	6	0	0	0	1.1161	1	2179	2179		30.569	1.9921	1	4754900	+		68316	27984	47937	48014	74192	74192					0.08505510397026228
RPLHTDLYL	9	Unmodified	_RPLHTDLYL_					0	0	0			REV__ENST00000328965.8_2_11:120099983-120100535:+|nuORF	REV__ENST00000328965.8_2_11:120099983-120100535:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2845458984375	2	564.314023	1126.61349	-0.7248	-0.00040901	-2.9298	-0.0016533	-3.6545	-0.0020623	564.8114081461839	84.15	0.47423	84.15	83.866	84.341	0					16	10	2	0	0	0	0.023417	1	10510	10510		79.451	23.947	1	53047	+		68317	30440	47938	48015	74193	74193					0.05525120742936451
RPLICMSRWE	10	Unmodified	_RPLICMSRWE_					0	0	0			REV__ENST00000300249.9_1_18:32621372-32650196:+|nuORF	REV__ENST00000300249.9_1_18:32621372-32650196:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	645.8251953125	2	645.825918	1289.63728	-0.72674	-0.00046934	-0.72848	-0.00047047	-1.4552	-0.00093982	645.8253869246067	21.953	1.0586	22.024	21.546	22.604	0.071487					61	21	4	0	0	0	0.77808	1	674	674		62.107	19.243	1	454150	+		68318	30045	47939	48016	74194	74194					0.0040489491345852
RPLICMSRWE	10	Unmodified	_RPLICMSRWE_					0	0	0			REV__ENST00000300249.9_1_18:32621372-32650196:+|nuORF	REV__ENST00000300249.9_1_18:32621372-32650196:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	645.825918	1289.63728	0.47076	0.00030403	-1.9058	-0.0012308	-1.435	-0.00092677	645.824620782597	22.112	1.082	22.112	21.537	22.619	0	0.02858	-0.00014692	NaN	62.107	67	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530790	+		68319	30045	47939	48016							0.0040489491345852
RPLISPHTT	9	Unmodified	_RPLISPHTT_					0	0	0			REV__ENST00000590513.2_1_17:40705339-40705789:-|nuORF	REV__ENST00000590513.2_1_17:40705339-40705789:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7537841796875	2	511.293091	1020.57163	-0.66549	-0.00034026	3.8747	0.0019811	3.2092	0.0016408	511.29321876432135	45.508	0.75763	45.297	45.089	45.846	-0.21109					59	21	4	0	0	0	0.024447	1	4362	4362		13.454	1.2472	1	2027300	+		68320	35703	47940	48017	74195	74195					0.06216565054421608
RPLKTTFDLAE	11	Unmodified	_RPLKTTFDLAE_					0	0	0			REV__ENST00000517436.5_1_8:28309874-28347735:-|nuORF	REV__ENST00000517436.5_1_8:28309874-28347735:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.88604736328125	3	430.906594	1289.69795	-0.45507	-0.00019609	-3.1647	-0.0013637	-3.6197	-0.0015598	431.2390032031869	22.11	0.37684	22.11	21.868	22.245	0					12	7	2	0	0	0	0.024765	1	757	757		39.873	17.312	1	26728	+		68321	28769	47941	48018	74196	74196					0.06469026769036645
RPLLGLVVV	9	Unmodified	_RPLLGLVVV_					0	0	0			REV__ENSG00000079462|ENST00000262890|PAFAH1B3	REV__ENSG00000079462|ENST00000262890|PAFAH1B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.30804443359375	2	483.328945	964.643337	-0.32978	-0.00015939	0.36484	0.00017634	0.03506	1.6945E-05	483.3289128650291	81.458	0.69215	81.458	81.138	81.83	0					37	16	3	0	0	0	0.024541	1	10150	10150		16.473	5.6076	1	395030	+		68322	20638	47942	48019	74197	74197					0.15960104478949688
RPLLICIFPF	10	Unmodified	_RPLLICIFPF_					0	0	0		ENST00000228827.7_1_12:110890303-110890486:-|nuORF	ENST00000228827.7_1_12:110890303-110890486:-|nuORF	ENST00000228827.7_1_12:110890303-110890486:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.5792236328125	3	406.9071	1217.69947	0.60787	0.00024735	-0.34902	-0.00014202	0.25884	0.00010532	406.90686169546444	34.713	0.64928	34.713	34.479	35.129	0					29	16	2	0	0	0	0.03519	1	2580	2580		29.17	8.3329	1	618970			68323	11223	47943	48020	74198	74198					0.09932989324079244
RPLLKSAL	8	Unmodified	_RPLLKSAL_					0	0	0		ENST00000411998.1_1_21:34638094-34638440:-|nuORF	ENST00000411998.1_1_21:34638094-34638440:-|nuORF	ENST00000411998.1_1_21:34638094-34638440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7545166015625	2	449.297645	896.580737	-0.74776	-0.00033597	0.73096	0.00032842	-0.016803	-7.5495E-06	449.297819070788	39.723	0.41683	39.746	39.526	39.942	0.023727					19	11	2	0	0	0	0.027866	1	3391	3391		30.504	7.4612	1	275950			68324	13811	47944	48021	74199	74199					0.12830958410745552
RPLLPRPPRRP	11	Unmodified	_RPLLPRPPRRP_					0	0	0		ENST00000409786.1_1_2:171570143-171571073:-|nuORF	ENST00000409786.1_1_2:171570143-171571073:-|nuORF	ENST00000409786.1_1_2:171570143-171571073:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.24078369140625	3	452.289595	1353.84696	1.2798	0.00057882	-2.4363	-0.0011019	-1.1565	-0.00052308	452.2884774711262	18.036	0.54786	17.879	17.405	17.953	-0.15637					12	10	2	0	0	0	0.024873	1	253	253		9.6461	0	1	20444			68325	13791	47945	48022	74200	74200					0.1841864197308496
RPLLPSENI	9	Unmodified	_RPLLPSENI_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7696533203125	2	519.800749	1037.58694	-0.74473	-0.00038711	-0.20098	-0.00010447	-0.94571	-0.00049158	519.8004608626068	35.498	0.47439	35.542	35.267	35.741	0.04406					18	11	2	0	0	0	0.024263	1	2701	2701		42.396	0	1	352140			68326	7493	47946	48023	74201	74201					0.06965431851608628
RPLLTGGL	8	Unmodified	_RPLLTGGL_					0	0	0			REV__ENST00000350210.6_1_1:155220182-155220314:-|nuORF	REV__ENST00000350210.6_1_1:155220182-155220314:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2100830078125	2	413.760895	825.507237	0.71265	0.00029487	0.41831	0.00017308	1.131	0.00046795	413.76079065418514	20.554	0.6908	20.359	20.088	20.779	-0.19577					19	13	3	0	0	0	0.027866	1	557	557		20.482	0	1	89635	+		68327	30729	47947	48024	74202	74202					0.0875040996829739
RPLLTGGL	8	Unmodified	_RPLLTGGL_					0	0	0			REV__ENST00000350210.6_1_1:155220182-155220314:-|nuORF	REV__ENST00000350210.6_1_1:155220182-155220314:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.760895	825.507237	0.041176	1.7037E-05	1.0705	0.00044291	1.1116	0.00045995	413.76102480696494	20.452	0.59036	20.284	20.049	20.639	-0.16774	-0.048603	0.00026863	NaN	20.482	17	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57240	+		68328	30729	47947	48024							0.0875040996829739
RPLLYAHAP	9	Unmodified	_RPLLYAHAP_					0	0	0			REV__ENSG00000183114|ENST00000332947|FAM43B	REV__ENSG00000183114|ENST00000332947|FAM43B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2645263671875	2	519.298176	1036.5818	-0.55968	-0.00029064	-1.932	-0.0010033	-2.4917	-0.0012939	519.2966441292548	57.612	0.18646	57.379	57.237	57.424	-0.23363					7	4	2	0	0	0	0.024517	1	6287	6287		35.201	18.728	1	153070	+		68329	27540	47948	48025	74203	74203					0.0649717277963191
RPLMMLVES	9	Unmodified	_RPLMMLVES_					0	0	0			REV__ENSG00000173302|ENST00000309926|GPR148	REV__ENSG00000173302|ENST00000309926|GPR148	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.2870483398438	2	538.285563	1074.55657	-1.1137	-0.0005995	4.1926	0.0022568	3.0789	0.0016573	538.2876027398833	21.49	1.7317	21.562	21.057	22.789	0.071487					87	35	3	0	0	0	0.83071	1	602	602		37.159	5.2042	1	351860	+		68330	26764	47949	48026	74204	74204					0.02227613870559253
RPLMMLVES	9	Unmodified	_RPLMMLVES_					0	0	0			REV__ENSG00000173302|ENST00000309926|GPR148	REV__ENSG00000173302|ENST00000309926|GPR148	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	538.285563	1074.55657	-0.88601	-0.00047692	3.962	0.0021327	3.076	0.0016558	538.287371535805	21.568	1.7634	21.478	20.961	22.724	-0.090092	-0.034381	-0.00027362	NaN	37.159	89	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374490	+		68331	26764	47949	48026							0.02227613870559253
RPLMMLVES	9	Unmodified	_RPLMMLVES_					0	0	0			REV__ENSG00000173302|ENST00000309926|GPR148	REV__ENSG00000173302|ENST00000309926|GPR148	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	538.285563	1074.55657	-1.1137	-0.0005995	4.1926	0.0022568	3.0789	0.0016573	538.2876027398833	21.49	1.7317	21.562	21.057	22.789	0.071487	0.049143	-2.5354E-05	NaN	37.159	87	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351860	+		68332	26764	47949	48026							0.02227613870559253
RPLNANVI	8	Unmodified	_RPLNANVI_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2083435058594	2	448.769252	895.52395	-0.34744	-0.00015592	0.63959	0.00028703	0.29214	0.00013111	448.7693390309719	32.03	0.43591	32.092	31.879	32.315	0.062885					19	10	2	0	0	0	0.027866	1	2119	2119		18.324	0	1	269750	+		68333	22644	47950	48027	74205	74205					0.07200910854237463
RPLPPKGMP	9	Unmodified	_RPLPPKGMP_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.26251220703125	2	496.78913	991.563706	-0.92654	-0.00046029	1.2018	0.00059706	0.2753	0.00013677	496.7889674330484	44.325	0.24584	44.081	43.94	44.186	-0.2444					11	6	3	0	0	0	0.024487	1	4095	4095		24.203	16.512	1	94590	+		68334	21812	47951	48028	74206	74206					0.0675871453330501
RPLPSLQRQL	10	Unmodified	_RPLPSLQRQL_					0	0	0			REV__ENST00000483405.5_2_16:29911714-29911888:+|nuORF	REV__ENST00000483405.5_2_16:29911714-29911888:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.366455078125	2	604.367121	1206.71969	0.12428	7.5109E-05	-0.8283	-0.0005006	-0.70403	-0.00042549	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.1237	1	12934	12934		31.53	12.426	1	4482300	+		68335	33507	47952	48029	74207	74207					0.12459876308253115
RPLPSSLVL	9	Unmodified	_RPLPSSLVL_					0	0	0			REV__ENST00000526698.1_1_11:1501682-1502057:-|nuORF	REV__ENST00000526698.1_1_11:1501682-1502057:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.5795593261719	2	491.30821	980.601866	0.0092021	4.5211E-06	-2.7303	-0.0013414	-2.7211	-0.0013369	491.3067181390281	18.96	0.44126	18.841	18.561	19.003	-0.11872					14	8	3	0	0	0	0.024381	1	350	350		29.15	16.19	1	56639	+		68336	34457	47953	48030	74208	74208					0.11078923719594513
RPLQPFLE	8	Unmodified	_RPLQPFLE_					0	0	0		ENST00000302351.8_1_5:73936651-73937086:-|nuORF	ENST00000302351.8_1_5:73936651-73937086:-|nuORF	ENST00000302351.8_1_5:73936651-73937086:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8241271972656	2	500.284734	998.554916	-0.42358	-0.00021191	-3.5322	-0.0017671	-3.9558	-0.001979	500.2827959541713	33.693	0.5315	33.69	33.379	33.91	-0.0025291					26	13	3	0	0	0	0.027866	1	2422	2422		42.474	0	1	293700			68337	11953	47954	48031	74209	74209					0.05558064168474175
RPLQSPTL	8	Unmodified	_RPLQSPTL_					0	0	0			REV__ENST00000479665.5_2_3:28390532-28390571:-|nuORF	REV__ENST00000479665.5_2_3:28390532-28390571:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.26904296875	2	456.269084	910.523616	-0.016669	-7.6056E-06	-0.65379	-0.0002983	-0.67046	-0.00030591	456.2688010774782	45.082	1.6533	45.082	44.725	46.378	0					122	47	5	0	0	0	0.093853	3	4339	4339;4351;4375		162.31	5.097	1	24759000	+		68338	33405	47955	48032	74210;74211;74212	74210					0.06477491134376123
RPLQSPTL	8	Unmodified	_RPLQSPTL_					0	0	0			REV__ENST00000479665.5_2_3:28390532-28390571:-|nuORF	REV__ENST00000479665.5_2_3:28390532-28390571:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2688903808594	2	456.269084	910.523616	-0.49395	-0.00022538	-0.074134	-3.3825E-05	-0.56809	-0.0002592	456.26906969877064	45.2	1.5497	45.051	44.697	46.247	-0.1488					108	44	5	0	0	0	0.15677	1	4330	4330		147.69	4.5865	1	26120000	+		68339	33405	47955	48032	74213	74213					0.06477491134376123
RPLQSPTL	8	Unmodified	_RPLQSPTL_					0	0	0			REV__ENST00000479665.5_2_3:28390532-28390571:-|nuORF	REV__ENST00000479665.5_2_3:28390532-28390571:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2694396972656	2	456.269084	910.523616	0.05305	2.4205E-05	-0.70287	-0.0003207	-0.64982	-0.00029649	456.26878214586753	45.083	1.677	45.127	44.756	46.433	0.043877					102	48	4	0	0	0	0.093853	3	4288	4267;4276;4288		162.31	19.199	1	26588000	+		68340	33405	47955	48032	74214;74215;74216	74216					0.06477491134376123
RPLQTGVAS	9	Unmodified	_RPLQTGVAS_					0	0	0			REV__ENST00000253251.12_1_1:10093057-10093417:+|nuORF	REV__ENST00000253251.12_1_1:10093057-10093417:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7651672363281	2	464.764166	927.513779	1.0694	0.00049703	-1.9403	-0.00090176	-0.87083	-0.00040473	464.76331159374956	33.385	0.82092	33.441	33.07	33.89	0.056568					61	21	4	0	0	0	0.67687	1	2375	2375		47.657	1.6851	1	15221000	+		68341	29519	47956	48033	74217	74217					0.04712303128997064
RPLQTRKD	8	Unmodified	_RPLQTRKD_					0	0	0			REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.29583740234375	2	507.296165	1012.57778	-0.79268	-0.00040212	0.39498	0.00020037	-0.3977	-0.00020175	507.29621988391983	27.702	1.2155	27.702	27.398	28.613	0					49	30	3	0	0	0	0.83003	1	1539	1539		56.721	7.2795	1	1046800	+		68342	36097	47957	48034	74218	74218					0.07199083285945562
RPLQTRKD	8	Unmodified	_RPLQTRKD_					0	0	0			REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	507.296165	1012.57778	-0.79268	-0.00040212	0.39498	0.00020037	-0.3977	-0.00020175	507.29621988391983	27.702	1.2155	27.702	27.398	28.613	0	0.04778	-9.1128E-06	NaN	56.721	49	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1046800	+		68343	36097	47957	48034							0.07199083285945562
RPLQTRKD	8	Unmodified	_RPLQTRKD_					0	0	0			REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	507.296165	1012.57778	-0.53651	-0.00027217	0.23345	0.00011843	-0.30306	-0.00015374	507.29613269466364	27.691	0.9688	27.678	27.352	28.321	-0.012983	0.02381	-0.00017301	NaN	56.721	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1048000	+		68344	36097	47957	48034							0.07199083285945562
RPLQTRKD	8	Unmodified	_RPLQTRKD_					0	0	0			REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	REV__HERC2|p.P3892Q|1|0.1|ENSG00000128731|chr15:28142263-28142263|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.296165	1012.57778	-0.77457	-0.00039293	0.76751	0.00038935	-0.0070569	-3.5799E-06	507.29629076570825	27.502	1.2075	27.583	27.245	28.453	0.081293	-0.071589	0.00036885	NaN	56.721	53	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1139600	+		68345	36097	47957	48034							0.07199083285945562
RPLRAQLLE	9	Unmodified	_RPLRAQLLE_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3350219726562	2	548.33529	1094.65603	-1.2642	-0.00069323	0.16338	8.9587E-05	-1.1009	-0.00060364	548.3353500196921	43.555	1.0073	43.555	43.113	44.12	0					80	27	5	0	0	0	0.55828	1	4088	4088		55.504	4.1688	1	7840100	+		68346	21050	47958	48035	74219	74219					0.11248515871147902
RPLRAQLLE	9	Unmodified	_RPLRAQLLE_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3351440429688	2	548.33529	1094.65603	-1.3827	-0.0007582	0.18392	0.00010085	-1.1988	-0.00065735	548.3353474770954	43.792	0.89397	43.647	43.205	44.099	-0.14471					74	24	5	0	0	0	0.4752	2	4100	4100;4113		60.972	9.3404	1	7697700	+		68347	21050	47958	48035	74220;74221	74220					0.11248515871147902
RPLRLGLP	8	Unmodified	_RPLRLGLP_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2691345214844	2	461.303262	920.59197	0.0097486	4.4971E-06	-0.24632	-0.00011363	-0.23657	-0.00010913	461.30297129218974	45.897	0.62305	45.897	45.613	46.236	0					43	17	3	0	0	0	0.027866	1	4478	4478		33.516	0	1	1842400	+		68348	27846	47959	48036	74222	74222					0.12849780504882347
RPLRLGLP	8	Unmodified	_RPLRLGLP_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2689208984375	2	461.303262	920.59197	0.31474	0.00014519	-0.43102	-0.00019883	-0.11628	-5.3641E-05	461.3028831639146	45.852	0.61942	45.896	45.647	46.267	0.04388					47	17	4	0	0	0	0.027866	1	4417	4417		33.516	0	1	1791500	+		68349	27846	47959	48036	74223	74223					0.12849780504882347
RPLRQAGG	8	Unmodified	_RPLRQAGG_					0	0	0			REV__ENST00000573095.1_1_16:3073473-3073942:-|nuORF	REV__ENST00000573095.1_1_16:3073473-3073942:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.86077880859375	2	427.751393	853.488233	-0.45187	-0.00019329	-1.1929	-0.00051028	-1.6448	-0.00070356	427.74869641473214	20.899	0.66994	20.8	20.528	21.198	-0.099031					19	13	2	0	0	0	0.027866	1	628	628		20.482	1.1219	1	16353	+		68350	21358	47960	48037	74224	74224					0.055628733972298505
RPLRRFFH	8	Unmodified	_RPLRRFFH_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.8276977539062	2	564.830509	1127.64647	-0.92688	-0.00052353	-4.0564	-0.0022912	-4.9833	-0.0028147	564.8280892768355	33.866	0.83232	33.923	33.615	34.448	0.056572					56	20	4	0	0	0	0.91239	2	2443	2431;2443		50.025	9.2464	1	2523400			68351	2494	47961	48038	74225;74226	74226					0.08774792376334517
RPLRRFFH	8	Unmodified	_RPLRRFFH_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	564.830509	1127.64647	-0.69412	-0.00039206	-4.3627	-0.0024642	-5.0568	-0.0028562	564.8279462834419	34.034	0.7408	34.034	33.739	34.479	0	0.098665	-7.6947E-05	NaN	50.025	55	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2845300			68352	2494	47961	48038							0.08774792376334517
RPLRRFFH	8	Unmodified	_RPLRRFFH_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	564.830509	1127.64647	-0.48486	-0.00027387	-4.5562	-0.0025735	-5.0411	-0.0028473	564.8278695407402	33.854	0.81385	33.85	33.561	34.375	-0.0045624	-0.085901	-0.00029552	NaN	50.025	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2951200			68353	2494	47961	48038							0.08774792376334517
RPLRRTFST	9	Unmodified	_RPLRRTFST_					0	0	0		nc|ENSG00000111481|P61923-2|COPZ1;ENST00000548753.1_1_12:54734376-54737035:+|nuORF	nc|ENSG00000111481|P61923-2|COPZ1	nc|ENSG00000111481|P61923-2|COPZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.330810546875	2	567.330539	1132.64652	0.14889	8.447E-05	-1.4619	-0.0008294	-1.313	-0.00074493	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	1.0148	1	10801	10801		17.365	0	1	5699400			68354	18170	47962	48039	74227	74227					0.08550747585650242
RPLRTLGPVM	10	Unmodified	_RPLRTLGPVM_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.3455200195312	2	570.339518	1138.66448	-1.1518	-0.00065694	-2.7513	-0.0015692	-3.9032	-0.0022261	570.3377832089676	36.199	1.1101	36.237	35.652	36.762	0.038044					41	30	2	0	0	0	0.03519	1	2700	2700		79.713	44.561	1	191410			68355	7655	47963	48040	74228	74228					0.10069746516137457
RPLSGPRA	8	Unmodified	_RPLSGPRA_					0	0	0		ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2538757324219	2	427.253769	852.492984	-0.58472	-0.00024982	0.18764	8.0168E-05	-0.39709	-0.00016966	427.2539224512093	23.349	2.0442	23.288	22.52	24.564	-0.06086					112	46	4	0	0	0	1.0009	1	895	895		37.159	0	1	17423000			68356	17111	47964	48041	74229	74229					0.0608375753998871
RPLSGPRA	8	Unmodified	_RPLSGPRA_					0	0	0		ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.25390625	2	427.253769	852.492984	-0.16668	-7.1214E-05	-0.17819	-7.6133E-05	-0.34487	-0.00014735	427.25375529811447	23.255	2.2724	23.331	22.319	24.591	0.076241					120	50	5	0	0	0	0.845	3	868	856;868;895		55.504	0	1	17722000			68357	17111	47964	48041	74230;74231;74232	74231					0.0608375753998871
RPLSLLGRK	9	Unmodified	_RPLSLLGRK_					0	0	0		ENST00000559345.5_1_15:79183828-79183897:+|nuORF	ENST00000559345.5_1_15:79183828-79183897:+|nuORF	ENST00000559345.5_1_15:79183828-79183897:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3400268554688	2	520.340375	1038.6662	-0.5796	-0.00030159	0.04462	2.3218E-05	-0.53498	-0.00027837	520.3402579855747	23.094	0.84715	23.033	22.753	23.6	-0.060862					52	19	4	0	0	0	0.97455	1	855	855		25.574	0.12388	1	891850			68358	16777	47965	48042	74233	74233					0.14841123596397665
RPLSPQWA	8	Unmodified	_RPLSPQWA_					0	0	0		ENST00000494191.6_1_1:17280548-17280737:+|nuORF	ENST00000494191.6_1_1:17280548-17280737:+|nuORF	ENST00000494191.6_1_1:17280548-17280737:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	477.7587890625	2	477.761426	953.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.009	1	23.083	22.583	23.583	0.073954								0	0	0	0.63389	1	818	818		45.952	0	1				68359	15523	47966	48043	74234	74234					0.029686243371770615
RPLSRLLS	8	Unmodified	_RPLSRLLS_					0	0	0			REV__ENSG00000250571|ENST00000340042|GLI4	REV__ENSG00000250571|ENST00000340042|GLI4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.26141357421875	2	471.298176	940.581799	0.20773	9.7905E-05	2.0534	0.00096775	2.2611	0.0010657	471.2992139094376	26.343	0.24616	26.343	26.243	26.489	0					7	5	2	0	0	0	0.027866	1	1332	1332		39.253	0	1	23525	+		68360	29028	47967	48044	74235	74235					0.10913172779669367
RPLSRNEV	8	Unmodified	_RPLSRNEV_					0	0	0		ENSG00000138138|ENST00000680024|ATAD1;nc|ENSG00000138138|Q8NBU5-2|ATAD1	ENSG00000138138|ENST00000680024|ATAD1	ENSG00000138138|ENST00000680024|ATAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.77386474609375	2	485.775065	969.535577	-0.63965	-0.00031073	0.36103	0.00017538	-0.27863	-0.00013535	485.7751065956583	23.337	1.0186	23.276	22.709	23.727	-0.060862					49	23	3	0	0	0	0.95514	1	893	893		44.377	2.9506	1	745660			68361	5211	47968	48045	74236	74236					0.04959107877562019
RPLSTKLT	8	Unmodified	_RPLSTKLT_					0	0	0			REV__ENST00000524867.1_1_11:811612-811654:+|nuORF	REV__ENST00000524867.1_1_11:811612-811654:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.25439453125	2	458.284734	914.554916	-0.28174	-0.00012912	0.85081	0.00038991	0.56907	0.0002608	458.2849608359372	21.321	0.19573	21.231	21.059	21.255	-0.090092					5	3	2	0	0	0	0.027866	1	621	621		29.15	3.6994	1	10649	+		68362	34401	47969	48046	74237	74237					0.09422064168461475
RPLTFHGL	8	Unmodified	_RPLTFHGL_					0	0	0		nc|ENSG00000011021|P51797-5|CLCN6;nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.78814697265625	2	470.771794	939.529036	-0.49873	-0.00023479	-2.3227	-0.0010935	-2.8214	-0.0013282	470.77077794218377	23.971	1.0007	23.924	23.441	24.442	-0.047148					30	22	2	0	0	0	0.027866	1	987	987		65.803	14.468	1	147620			68363	18033	47970	48047	74238	74238					0.0568521471685699
RPLTQSRVLE	10	Unmodified	_RPLTQSRVLE_					0	0	0			REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	599.8103637695312	2	599.848761	1197.68297	-0.4398	-0.00026382	3.039	0.0018229	2.5992	0.0015591	599.8507355820373	76.814	0.46604	76.645	76.352	76.818	-0.16853					21	10	3	0	0	0	0.03519	1	9081	9081		16.717	5.2064	1	160810	+		68364	28018	47971	48048	74239	74239					0.09203579691734376
RPLTQSRVLE	10	Unmodified	_RPLTQSRVLE_					0	0	0			REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	599.848761	1197.68297	0.038585	2.3145E-05	2.9707	0.001782	3.0093	0.0018051	599.8505851539378	77.039	0.38081	76.771	76.467	76.848	-0.26806	0.05871	1.808E-05	NaN	16.717	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193900	+		68365	28018	47971	48048							0.09203579691734376
RPLTQSRVLE	10	Unmodified	_RPLTQSRVLE_					0	0	0			REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	599.848761	1197.68297	-0.051114	-3.0661E-05	2.743	0.0016454	2.6919	0.0016147	599.850335427619	76.971	0.54685	76.72	76.356	76.903	-0.25162	0.0079068	-0.0002551	NaN	16.717	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203620	+		68366	28018	47971	48048							0.09203579691734376
RPLVAPRAM	9	Unmodified	_RPLVAPRAM_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7493896484375	2	505.800029	1009.5855	-0.48249	-0.00024404	-3.2697	-0.0016538	-3.7522	-0.0018978	505.7982157852511	26.382	1.5995	26.463	25.793	27.392	0.081291					82	39	3	0	0	0	0.024354	1	1322	1322		30.504	0	1	229480	+		68367	20794	47972	48049	74240	74240					0.08109519281856592
RPLVGAKR	8	Unmodified	_RPLVGAKR_					0	0	0			REV__ENST00000520095.5_1_5:140071196-140073077:+|nuORF	REV__ENST00000520095.5_1_5:140071196-140073077:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.793212890625	2	448.793061	895.571569	-0.44467	-0.00019957	0.56681	0.00025438	0.12214	5.4814E-05	448.7932086786109	30.614	1.0721	30.688	30.42	31.492	0.074314					61	25	3	0	0	0	0.91239	1	1934	1934		50.025	7.5501	1	1172000	+		68368	34287	47973	48050	74241	74241					0.11960609845084491
RPLVGKRVS	9	Unmodified	_RPLVGKRVS_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7710266113281	2	506.324725	1010.6349	-0.48741	-0.00024679	0.060791	3.078E-05	-0.42661	-0.00021601	506.32461426100764	21.732	0.61814	21.642	21.354	21.972	-0.090094					29	12	3	0	0	0	0.024457	1	677	677		21.96	0	1	107550	+		68369	19892	47974	48051	74242	74242					0.13000550562321678
RPLVLCCNL	9	Unmodified	_RPLVLCCNL_					0	0	0			REV__ENST00000468090.5_1_21:45178713-45178851:+|nuORF	REV__ENST00000468090.5_1_21:45178713-45178851:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2669677734375	2	515.780447	1029.54634	-0.75949	-0.00039173	-2.45	-0.0012637	-3.2095	-0.0016554	516.2804782216513	30.958	0.2119	31.031	30.874	31.086	0.073206					6	4	2	0	0	0	0.024523	1	1969	1969		29.15	3.6994	1	47834	+		68370	33093	47975	48052	74243	74243					0.03275050935963009
RPLWQHFF	8	Unmodified	_RPLWQHFF_					0	0	0		nc|ENSG00000228696|Q8IVW1-2|ARL17A;ENSG00000228696|ENST00000450673|ARL17B;ENSG00000185829|ENST00000336125|ARL17A;nc|ENSG00000228696|Q8IVW1-4|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.8347778320312	2	565.798343	1129.58213	-0.61351	-0.00034712	2.097	0.0011865	1.4835	0.00083934	565.7994782589461	21.794	0.80548	21.704	21.403	22.209	-0.090092					41	16	4	0	0	0	0.027866	1	681	681		26.796	0	1	313480			68371	9480	47976	48053	74244	74244					0.02252592499507955
RPLYALLH	8	Unmodified	_RPLYALLH_					0	0	0		ENST00000465335.1_1_1:6260785-6269413:-|nuORF	ENST00000465335.1_1_1:6260785-6269413:-|nuORF	ENST00000465335.1_1_1:6260785-6269413:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7940368652344	2	491.795269	981.575986	-0.97809	-0.00048102	-3.0554	-0.0015026	-4.0335	-0.0019837	491.7936804982643	29.012	1.199	29.012	28.696	29.895	0					55	29	3	0	0	0	0.94001	1	1736	1736		46.766	0.81448	1	1714300			68372	14778	47977	48054	74245	74245					0.08446074267999393
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.3502807617188	2	558.350409	1114.68626	-0.27279	-0.00015231	-0.39449	-0.00022026	-0.66728	-0.00037257	558.3501386336501	49.877	1.2426	49.877	49.399	50.642	0					99	35	4	0	0	0	0.39228	2	5187	5187;5199		66.429	5.5284	1	5628300			68373	3408	47978	48055	74246;74247	74246					0.1335087453635424
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MSMS	OPSCC_39_ClassI_Rep-2	2	558.3499145507812	2	558.350409	1114.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.053	1	49.902	49.402	50.402	-0.1512								0	0	0	0.17581	1	5183	5183		76.774	21.27	1				68374	3408	47978	48055	74248	74248					0.1335087453635424
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MSMS	OPSCC_39_ClassI_Rep-2	2	558.3505859375	2	558.350409	1114.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.105	1	49.953	49.453	50.453	-0.1512								0	0	0	0.47068	1	5192	5192		56.721	1.2168	1				68375	3408	47978	48055	74249	74249					0.1335087453635424
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.3501586914062	2	558.350409	1114.68626	-0.39044	-0.000218	-0.12143	-6.78E-05	-0.51187	-0.0002858	558.3502549387098	49.816	1.0794	49.89	49.391	50.47	0.074196					85	30	4	0	0	0	0.29158	2	5095	5095;5120		76.774	13.468	1	5975700			68376	3408	47978	48055	74250;74251	74250					0.1335087453635424
RPLYYTSP	8	Unmodified	_RPLYYTSP_					0	0	0		ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7613220214844	2	498.761092	995.507631	3.6919	0.0018414	-2.8655	-0.0014292	0.82646	0.0004122	498.7595237184479	16.588	0.44605	16.588	16.461	16.907	0					26	14	3	0	0	0	0.81662	1	77	77		57.811	17.239	1	241180			68377	8055	47979	48056	74252	74252					0.009697848974610679
RPMAPPKP	8	Unmodified	_RPMAPPKP_					0	0	0			REV__ENST00000343217.6_1_2:241499837-241500047:+|nuORF	REV__ENST00000343217.6_1_2:241499837-241500047:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2701721191406	2	447.254923	892.495293	-0.26322	-0.00011773	0.87035	0.00038927	0.60713	0.00027154	447.2547777696453	22.895	1.2078	22.895	22.152	23.36	0					36	26	2	0	0	0	0.027866	1	787	787		47.916	9.1095	1	74795	+		68378	30662	47980	48057	74253	74253					0.04474469953436255
RPMAPPKP	8	Unmodified	_RPMAPPKP_					0	0	0			REV__ENST00000343217.6_1_2:241499837-241500047:+|nuORF	REV__ENST00000343217.6_1_2:241499837-241500047:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	447.254923	892.495293	-0.77285	-0.00034566	3.3465	0.0014967	2.5737	0.0011511	447.2561191682919	22.787	1.2017	22.861	22.03	23.232	0.073954	0.001812	0.00063139	NaN	47.916	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104400	+		68379	30662	47980	48057							0.04474469953436255
RPMAPPKPR	9	Unmodified	_RPMAPPKPR_					0	0	0			REV__ENST00000343217.6_1_2:241499837-241500047:+|nuORF	REV__ENST00000343217.6_1_2:241499837-241500047:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2872314453125	2	525.305478	1048.5964	2.8454	0.0014947	0.75044	0.00039421	3.5959	0.0018889	525.8067098844771	18.672	0.24924	18.43	18.274	18.524	-0.24256					6	4	2	0	0	0	0.024436	1	303	303		30.504	0	1	21261	+		68380	30662	47981	48058	74254	74254					0.07404921656143415
RPMAVDDN	8	Unmodified	_RPMAVDDN_					0	0	0			REV__ENSG00000144362|ENST00000359744|PHOSPHO2	REV__ENSG00000144362|ENST00000359744|PHOSPHO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	459.210909	916.407265	-0.33621	-0.00015439	-3.3495	-0.0015381	-3.6857	-0.0016925	459.2092766083541	26.448	0.40893	26.425	26.243	26.652	-0.023088					16	9	2	0	0	0	0.027866	1	1367	1367		29.15	0	1	119010	+		68381	24329	47982	48059	74255	74255					-0.05428195427839455
RPMFAKAV	8	Unmodified	_RPMFAKAV_					0	0	0			REV__ENSG00000185753|ENST00000327877|CXorf38	REV__ENSG00000185753|ENST00000327877|CXorf38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.261474609375	2	460.262748	918.510943	-0.65066	-0.00029948	1.0121	0.00046583	0.36144	0.00016636	460.2629800650599	28.235	1.3378	28.235	27.653	28.99	0					72	32	4	0	0	0	1.0133	1	1628	1628		35.201	4.6971	1	1099500	+		68382	27792	47983	48060	74256	74256					0.0484275647048662
RPMGAAVWLI	10	Unmodified	_RPMGAAVWLI_					0	0	0		ENST00000413474.5_1_3:195709216-195711116:-|nuORF;ENST00000427841.5_1_3:195709129-195711137:-|nuORF	ENST00000413474.5_1_3:195709216-195711116:-|nuORF	ENST00000413474.5_1_3:195709216-195711116:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.317138671875	2	557.315512	1112.61647	-0.60389	-0.00033656	3.482	0.0019406	2.8781	0.001604	557.3171323204261	21.668	1.1538	21.668	20.998	22.152	0					65	23	4	0	0	0	1.0408	1	687	687		40.573	4.1259	1	601470			68383	13845	47984	48061	74257	74257					0.06466672596093304
RPMGAGEAL	9	Unmodified	_RPMGAGEAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2320251464844	2	451.231645	900.448736	-0.64015	-0.00028886	0.73327	0.00033088	0.093119	4.2018E-05	451.2317840335617	35.94	1.1569	35.94	35.608	36.764	0					67	31	4	0	0	0	0.35646	2	2803	2803;2816		68.787	13.283	1	2259900			68384	4344	47985	48062	74258;74259	74258					-0.0054701466849564895
RPMGAGEAL	9	Unmodified	_RPMGAGEAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2319030761719	2	451.231645	900.448736	-0.90834	-0.00040987	1.1718	0.00052876	0.26347	0.00011889	451.23203000508386	35.8	0.93632	35.758	35.447	36.383	-0.042458					61	25	4	0	0	0	0.39228	2	2783	2770;2783		66.429	10.925	1	2365900			68385	4344	47985	48062	74260;74261	74261					-0.0054701466849564895
RPMGAGEAL	9	Unmodified	_RPMGAGEAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.231689453125	2	451.231645	900.448736	-0.34748	-0.00015679	0.5348	0.00024132	0.18733	8.4527E-05	451.23175708784345	35.841	0.80471	35.885	35.575	36.38	0.04406					58	21	4	0	0	0	0.50848	2	2744	2730;2744		58.782	3.2778	1	2106500			68386	4344	47985	48062	74262;74263	74263					-0.0054701466849564895
RPMGAGEAL	9	Oxidation (M)	_RPM(Oxidation (M))GAGEAL_		RPM(1)GAGEAL		RPM(49)GAGEAL	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.22894287109375	2	459.229102	916.443651	0.3675	0.00016877	-0.61356	-0.00028176	-0.24606	-0.000113	459.2287585744806	28.569	0.95608	28.65	28.289	29.245	0.080811					47	23	3	0	0	0	0.6504	1	1622	1622		49.442	7.0454	1	1435900			68387	4344	47985	48063	74264	74264		174			-0.0179131853110448
RPMGAGEAL	9	Oxidation (M)	_RPM(Oxidation (M))GAGEAL_		RPM(1)GAGEAL		RPM(66)GAGEAL	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2292175292969	2	459.229102	916.443651	-0.33196	-0.00015244	0.71625	0.00032892	0.3843	0.00017648	459.2293382268946	30.34	3.8425	30.415	28.975	32.817	0.074316					201	95	4	0	0	0	0.39228	1	1909	1909		66.429	8.618	1	1378400			68388	4344	47985	48063	74265	74265		174			-0.0179131853110448
RPMHVVLM	8	Unmodified	_RPMHVVLM_					0	0	0			REV__ENSG00000117601|ENST00000367698|SERPINC1	REV__ENSG00000117601|ENST00000367698|SERPINC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.80316162109375	2	491.769883	981.525212	-0.62119	-0.00030548	0.65654	0.00032286	0.035349	1.7384E-05	491.76974228118473	36.001	1.038	36.039	35.61	36.648	0.038044					54	28	4	0	0	0	0.027866	1	2699	2699		28.254	0	1	472650	+		68389	22360	47986	48064	74266	74266					0.033710856271227385
RPMIHELL	8	Unmodified	_RPMIHELL_					0	0	0		ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7882385253906	2	504.786587	1007.55862	-1.0306	-0.00052024	4.4784	0.0022607	3.4478	0.0017404	504.7887383471644	20.346	0.97029	20.346	19.88	20.85	0					50	19	4	0	0	0	0.91239	1	524	524		50.025	2.1089	1	497660			68390	2897	47987	48065	74267	74267					0.05514410670673442
RPMMFQQT	8	Unmodified	_RPMMFQQT_					0	0	0			REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	REV__nc|ENSG00000148541|Q8NE31-2|FAM13C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7982177734375	2	519.746605	1037.47866	-0.90035	-0.00046795	2.8192	0.0014653	1.9188	0.00099731	519.7479309522181	30.531	2.8039	30.606	29.087	31.891	0.074314					141	68	3	0	0	0	0.027866	1	1926	1926		30.504	0	1	390620	+		68391	24624	47988	48066	74268	74268					-0.038583989948165254
RPNAGRIV	8	Unmodified	_RPNAGRIV_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.76708984375	2	441.767043	881.519533	-0.26622	-0.00011761	0.37334	0.00016493	0.10712	4.7324E-05	441.76710460831924	26.119	1.0878	26.119	25.779	26.867	0					52	25	3	0	0	0	0.81662	1	1292	1292		57.811	5.5121	1	2168500	+		68392	27480	47989	48067	74269	74269					0.07403446431328575
RPNFMTPIT	9	Unmodified	_RPNFMTPIT_					0	0	0			REV__ENSG00000161594|ENST00000293303|KLHL10	REV__ENSG00000161594|ENST00000293303|KLHL10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.78369140625	2	538.781502	1075.54845	-1.0797	-0.00058172	3.1842	0.0017156	2.1045	0.0011339	538.783092569059	29.542	1.1353	29.545	29.314	30.449	0.0031357					40	27	2	0	0	0	0.56934	1	1807	1807		54.776	3.4409	1	1301900	+		68393	25387	47990	48068	74270	74270					0.013698029454417338
RPNGRVAL	8	Unmodified	_RPNGRVAL_					0	0	0		ENSG00000247077|ENST00000498926|PGAM5	ENSG00000247077|ENST00000498926|PGAM5	ENSG00000247077|ENST00000498926|PGAM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.76690673828125	2	441.767043	881.519533	-0.26622	-0.00011761	0.37334	0.00016493	0.10712	4.7324E-05	441.76710460831924	26.119	1.0878	26.119	25.779	26.867	0					52	25	3	0	0	0	0.75307	1	1304	1304		62.978	20.504	1	2168500			68394	10828	47991	48069	74271	74271					0.07403446431317207
RPNGRVAL	8	Unmodified	_RPNGRVAL_					0	0	0		ENSG00000247077|ENST00000498926|PGAM5	ENSG00000247077|ENST00000498926|PGAM5	ENSG00000247077|ENST00000498926|PGAM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.76702880859375	2	441.767043	881.519533	-0.27725	-0.00012248	0.35926	0.00015871	0.082007	3.6228E-05	441.76708713208853	26.126	1.1634	26.103	25.82	26.984	-0.023088					49	27	3	0	0	0	0.96719	1	1293	1293		42.474	1.9018	1	2054400			68395	10828	47991	48069	74272	74272					0.07403446431317207
RPNGTKVAVL	10	Unmodified	_RPNGTKVAVL_					0	0	0		nc|ENSG00000119787|Q8NHH9-4|ATL2;ENST00000474535.2_1_2:38545640-38570535:-|nuORF;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.82177734375	2	527.822015	1053.62948	-1.3084	-0.00069059	0.62096	0.00032776	-0.68741	-0.00036283	527.8223055563183	32.773	0.71934	32.773	32.531	33.251	0					54	18	4	0	0	0	0.83673	2	2306	2295;2306		58.23	10.573	1	2343600			68396	18212	47992	48070	74273;74274	74274					0.10480826979846825
RPNGTKVAVL	10	Unmodified	_RPNGTKVAVL_					0	0	0		nc|ENSG00000119787|Q8NHH9-4|ATL2;ENST00000474535.2_1_2:38545640-38570535:-|nuORF;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.8219604492188	2	527.822015	1053.62948	-0.86951	-0.00045895	0.31847	0.0001681	-0.55104	-0.00029085	527.8221432543394	32.709	0.70959	32.721	32.45	33.16	0.011795					54	18	4	0	0	0	0.75651	1	2282	2282		63.534	13.509	1	2471800			68397	18212	47992	48070	74275	74275					0.10480826979846825
RPNGTKVAVL	10	Unmodified	_RPNGTKVAVL_					0	0	0		nc|ENSG00000119787|Q8NHH9-4|ATL2;ENST00000474535.2_1_2:38545640-38570535:-|nuORF;nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.822021484375	2	527.822015	1053.62948	0.071815	3.7906E-05	-0.64146	-0.00033858	-0.56965	-0.00030067	527.8216439784449	32.606	0.7234	32.668	32.352	33.076	0.062885					53	18	4	0	0	0	0.83673	2	2222	2222;2233		58.23	8.7884	1	2193700			68398	18212	47992	48070	74276;74277	74276					0.10480826979846825
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7743835449219	2	463.774534	925.534515	-0.29238	-0.0001356	0.087115	4.0402E-05	-0.20526	-9.5196E-05	463.774487627089	47.307	0.73473	47.307	47.076	47.811	0					48	21	3	0	0	0	0.11092	3	4742	4730;4742;4756		108.09	25.782	1	9512000			68399	3912	47993	48071	74278;74279;74280	74279					0.06876893508649573
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7743835449219	2	463.774534	925.534515	0.29055	0.00013475	-0.51578	-0.0002392	-0.22523	-0.00010445	463.77420809585686	47.472	0.76969	47.319	47.089	47.858	-0.15301					51	22	3	0	0	0	0.16468	2	4756	4742;4756		96.19	16.444	1	9341000			68400	3912	47993	48071	74281;74282	74282					0.06876893508649573
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7742919921875	2	463.774534	925.534515	-0.17289	-8.0183E-05	-0.098589	-4.5723E-05	-0.27148	-0.00012591	463.77440666679087	47.277	0.76873	47.336	47.032	47.8	0.059097					49	22	3	0	0	0	0.072054	2	4679	4667;4679		120.62	38.316	1	9153100			68401	3912	47993	48071	74283;74284	74284					0.06876893508649573
RPNKLPKP	8	Unmodified	_RPNKLPKP_					0	0	0			REV__ENSG00000132016|ENST00000586783|BRME1	REV__ENSG00000132016|ENST00000586783|BRME1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.3006591796875	2	475.300719	948.586885	1.1773	0.00055957	-1.532	-0.00072814	-0.35467	-0.00016858	475.29993416274027	39.578	1.4466	39.578	38.868	40.314	0					101	40	4	0	0	0	1.0338	1	3441	3441		31.955	1.4512	1	9076000	+		68402	23251	47994	48072	74285	74285					0.11053476642280202
RPNKQRSK	8	Unmodified	_RPNKQRSK_					0	0	0			REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	REV__MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.298583984375	2	507.301781	1012.58901	-0.67512	-0.00034249	0.87042	0.00044157	0.1953	9.9076E-05	507.3021450375997	27.013	0.25775	26.856	26.629	26.887	-0.15664					8	5	2	0	0	0	0.027866	1	1416	1416		11.511	0	1	324140	+		68403	23047	47995	48073	74286	74286					0.08321905380091721
RPNPSERPRQP	11	Unmodified	_RPNPSERPRQP_					0	0	0			REV__ENST00000601886.1_1_19:8429147-8429198:+|nuORF	REV__ENST00000601886.1_1_19:8429147-8429198:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.2249450683594	3	445.24097	1332.70108	-0.78044	-0.00034748	-3.8681	-0.0017222	-4.6486	-0.0020697	445.2388130401718	30.374	0.58467	30.196	29.782	30.366	-0.17818					15	13	2	0	0	0	0.024792	1	1911	1911		41.08	19.394	1	52691	+		68404	35864	47996	48074	74287	74287					0.0480371466642282
RPNQLGRRG	9	Unmodified	_RPNQLGRRG_					0	0	0			REV__ENST00000497454.5_1_6:33266938-33266995:-|nuORF	REV__ENST00000497454.5_1_6:33266938-33266995:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.3050537109375	2	527.304855	1052.59516	-0.075703	-3.9919E-05	-0.026468	-1.3957E-05	-0.10217	-5.3876E-05	527.3048777539068	98.108	1.4566	97.942	97.397	98.853	-0.16521					71	34	3	0	0	0	0.85329	1	12170	12170		35.618	5.1146	1	571960	+		68405	33854	47997	48075	74288	74288					0.07096423611619684
RPNSLKRH	8	Unmodified	_RPNSLKRH_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2967529296875	2	504.296499	1006.57845	-0.057145	-2.8818E-05	-0.84698	-0.00042713	-0.90412	-0.00045595	504.2961960132727	18.802	2.191	18.67	18.352	20.543	-0.13148					113	44	4	0	0	0	0.845	1	355	355		55.504	0	1	6611200	+		68406	27554	47998	48076	74289	74289					0.0754192272564751
RPNTKSSSDWL	11	Unmodified	_RPNTKSSSDWL_					0	0	0			REV__ENST00000301831.8_1_3:41795951-41831237:-|nuORF	REV__ENST00000301831.8_1_3:41795951-41831237:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	645.8250122070312	2	645.825483	1289.63641	0.8215	0.00053054	-1.6894	-0.0010911	-0.86792	-0.00056053	645.8243401114904	22.189	1.0888	22.113	21.56	22.648	-0.075296					67	22	4	0	0	0	0.79111	1	748	748		58.23	3.5076	1	412320	+		68407	30067	47999	48077	74290	74290					0.0031809506976969715
RPNTPGLLP	9	Unmodified	_RPNTPGLLP_					0	0	0			REV__SYNGAP1|p.P1301L|1|0.16|ENSG00000197283|chr6:33451776-33451776|C/T|missense_variant	REV__SYNGAP1|p.P1301L|1|0.16|ENSG00000197283|chr6:33451776-33451776|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7730712890625	2	482.782359	963.550165	-1.0256	-0.00049513	0.88796	0.00042869	-0.13761	-6.6434E-05	482.78264277799303	49.596	1.1875	49.67	49.316	50.503	0.074192					85	33	4	0	0	0	0.75397	1	5060	5060		42.396	3.1433	1	3057000	+		68408	37670	48000	48078	74291	74291					0.06693180025706624
RPNTPGLLP	9	Unmodified	_RPNTPGLLP_					0	0	0			REV__SYNGAP1|p.P1301L|1|0.16|ENSG00000197283|chr6:33451776-33451776|C/T|missense_variant	REV__SYNGAP1|p.P1301L|1|0.16|ENSG00000197283|chr6:33451776-33451776|C/T|missense_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	482.782359	963.550165	0.045374	2.1906E-05	-0.22959	-0.00011084	-0.18422	-8.8936E-05	482.78211746776736	49.866	1.0204	49.715	49.368	50.388	-0.1512	0.038389	-0.00030791	NaN	42.396	78	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2961400	+		68409	37670	48000	48078							0.06693180025706624
RPNTQQAV	8	Unmodified	_RPNTQQAV_					0	0	0			REV__MUS81|p.E314Q|1|0.1|ENSG00000172732|chr11:65863700-65863700|G/C|missense_variant	REV__MUS81|p.E314Q|1|0.1|ENSG00000172732|chr11:65863700-65863700|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2455749511719	2	457.246141	912.477728	-1.0112	-0.00046235	1.1818	0.00054038	0.17065	7.8029E-05	457.24651703091314	24.587	1.067	24.539	23.957	25.024	-0.047146					55	23	3	0	0	0	0.42327	1	1078	1078		94.006	3.2298	1	515110	+		68410	36402	48001	48079	74292	74292					0.017988459521347977
RPNTQQAV	8	Unmodified	_RPNTQQAV_					0	0	0			REV__MUS81|p.E314Q|1|0.1|ENSG00000172732|chr11:65863700-65863700|G/C|missense_variant	REV__MUS81|p.E314Q|1|0.1|ENSG00000172732|chr11:65863700-65863700|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.246141	912.477728	0.53406	0.0002442	-0.92915	-0.00042485	-0.39509	-0.00018065	457.2456586157599	24.552	0.64042	24.63	24.364	25.005	0.078344	0.045122	-0.0015381	NaN	94.006	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199490	+		68411	36402	48001	48079							0.017988459521347977
RPNTYPME	8	Unmodified	_RPNTYPME_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2965393066406	2	504.234384	1006.45422	-0.068774	-3.4678E-05	-2.7063	-0.0013646	-2.7751	-0.0013993	504.2310432656058	18.899	0.19571	18.767	18.645	18.841	-0.13147					5	3	2	0	0	0	0.027866	1	343	343		55.504	14.932	1	6050.8	+		68412	27604	48002	48080	74293	74293					-0.04875335876693043
RPNVGYLS	8	Unmodified	_RPNVGYLS_					0	0	0			REV__ENSG00000176399|ENST00000325870|DMRTA1	REV__ENSG00000176399|ENST00000325870|DMRTA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.77764892578125	2	453.245609	904.476666	0.74743	0.00033877	-0.47497	-0.00021528	0.27246	0.00012349	453.24517749205586	40.968	0.64185	40.845	40.618	41.26	-0.12317					32	17	3	0	0	0	0.027866	1	3692	3692		50.025	26.982	1	731770	+		68413	27016	48003	48081	74294	74294					0.020606315832424116
RPNVRIPV	8	Unmodified	_RPNVRIPV_					0	0	0			REV__chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	REV__chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.3003845214844	2	475.798343	949.582134	-0.53926	-0.00025658	-3.6392	-0.0017315	-4.1784	-0.0019881	475.7955210985676	40.213	0.22333	40.236	40.051	40.275	0.023006					8	5	2	0	0	0	0.027866	1	3433	3433		37.028	1.8278	1	43238	+		68414	19473	48004	48082	74295	74295					0.10532592499509974
RPPAKIEDL	9	Unmodified	_RPPAKIEDL_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3;MTMR3|p.Y434Ifs*5|1|0.05|ENSG00000100330|chr22:30012545-30012545|T/-|frameshift_variant	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7701416015625	2	519.800749	1037.58694	-1.2305	-0.00063963	0.51714	0.00026881	-0.71339	-0.00037082	519.8009072904696	35.614	0.43053	35.614	35.38	35.81	0					19	10	2	0	0	0	0.024397	1	2780	2780		47.657	0	1	370140			68415	2181	48005	48083	74296	74296					0.06965431851608628
RPPAPSLRA	9	Unmodified	_RPPAPSLRA_					0	0	0		nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;ENST00000493388.5_1_6:30594710-30608409:+|nuORF;ENST00000468713.5_1_6:30594689-30613691:+|nuORF	nc|ENSG00000137343|Q5SQI0|ATAT1	nc|ENSG00000137343|Q5SQI0|ATAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.78814697265625	2	482.787976	963.561398	-1.1594	-0.00055974	1.2376	0.0005975	0.078195	3.7752E-05	482.7884054754993	29.768	0.64943	29.768	29.487	30.137	0					38	15	3	0	0	0	0.80003	1	1869	1869		39.253	1.4413	1	707660			68416	18312	48006	48084	74297	74297					0.07816002119830046
RPPAPSLRA	9	Unmodified	_RPPAPSLRA_					0	0	0		nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;ENST00000493388.5_1_6:30594710-30608409:+|nuORF;ENST00000468713.5_1_6:30594689-30613691:+|nuORF	nc|ENSG00000137343|Q5SQI0|ATAT1	nc|ENSG00000137343|Q5SQI0|ATAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.787976	963.561398	-0.55397	-0.00026745	0.6252	0.00030184	0.07123	3.4389E-05	482.7880890680761	29.767	0.7309	29.776	29.433	30.164	0.0086708	0.047541	-0.00043417	NaN	39.253	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739870			68417	18312	48006	48084							0.07816002119830046
RPPDEEKSN	9	Unmodified	_RPPDEEKSN_					0	0	0			REV__ENSG00000044524|ENST00000336596|EPHA3	REV__ENSG00000044524|ENST00000336596|EPHA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.80029296875	2	536.256902	1070.49925	-0.53157	-0.00028506	-3.2887	-0.0017636	-3.8203	-0.0020487	536.7577300831649	55.414	0.40604	55.183	55.065	55.471	-0.23087					20	11	3	0	0	0	0.023274	1	5935	5935		58.23	13.853	1	279430	+		68418	20114	48007	48085	74298	74298					-0.03317813809803738
RPPDLHAPH	9	Unmodified	_RPPDLHAPH_					0	0	0			REV__ENST00000343674.10_1_11:46392918-46393321:+|nuORF	REV__ENST00000343674.10_1_11:46392918-46393321:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3035888671875	2	520.275232	1038.53591	-0.76117	-0.00039602	3.6867	0.0019181	2.9255	0.0015221	520.7784416039618	26.274	0.20145	26.274	26.163	26.365	0					6	4	2	0	0	0	0.024205	1	1327	1327		63.306	2.9026	1	34177	+		68419	30669	48008	48086	74299	74299					0.018185275974019532
RPPDLHAPH	9	Unmodified	_RPPDLHAPH_					0	0	0			REV__ENST00000343674.10_1_11:46392918-46393321:+|nuORF	REV__ENST00000343674.10_1_11:46392918-46393321:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.275232	1038.53591	-0.94165	-0.00048992	-1.5228	-0.00079226	-2.4644	-0.0012822	520.2740228681121	26.431	0.17004	26.195	26.098	26.268	-0.23603	-0.039564	-0.0031832	NaN	63.306	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60059	+		68420	30669	48008	48086							0.018185275974019532
RPPDLIAVL	9	Unmodified	_RPPDLIAVL_					0	0	0			REV__ENST00000487668.5_1_22:20100432-20101310:-|nuORF	REV__ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.263671875	2	497.30821	992.601866	-0.97354	-0.00048415	0.55613	0.00027657	-0.41741	-0.00020758	497.30827567315697	44.752	1.0007	44.54	44.184	45.185	-0.21109					47	26	2	0	0	0	0.024541	1	4131	4131		12.959	1.4482	1	372400	+		68421	21019	48009	48087	74300	74300					0.10526923719623937
RPPDSSPVQK	10	Unmodified	_RPPDSSPVQK_					0	0	0			REV__ENSG00000099399|ENST00000378988|MAGEB2	REV__ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.799560546875	2	555.798737	1109.58292	0.27641	0.00015363	-1.1187	-0.00062176	-0.84227	-0.00046813	555.797930864757	40.853	1.0635	40.853	40.551	41.615	0					56	29	2	0	0	0	0.91678	1	3629	3629		52.937	5.2794	1	3770000	+		68422	21006	48010	48088	74301	74301					0.03251342357907561
RPPEAGPRE	9	Unmodified	_RPPEAGPRE_					0	0	0			REV__ENST00000609471.1_1_9:139694564-139695182:+|nuORF	REV__ENST00000609471.1_1_9:139694564-139695182:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.76458740234375	2	504.764697	1007.51484	-0.55985	-0.00028259	-0.097403	-4.9165E-05	-0.65725	-0.00033176	504.7645902310088	20.88	0.71893	20.775	20.473	21.192	-0.10455					47	14	4	0	0	0	0.72494	1	592	592		44.377	7.2181	1	868740	+		68423	35985	48011	48089	74302	74302					0.011385174978954637
RPPECMVV	8	Unmodified	_RPPECMVV_					0	0	0			REV__ENST00000463033.1_1_22:17639451-17639493:-|nuORF	REV__ENST00000463033.1_1_22:17639451-17639493:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.754638671875	2	465.730423	929.446293	-0.63142	-0.00029407	3.9816	0.0018543	3.3501	0.0015603	465.7322980537523	23.545	0.37737	23.545	23.36	23.737	0					11	8	2	0	0	0	0.027866	1	965	965		50.025	16.509	1	72610	+		68424	32922	48012	48090	74303	74303					-0.021251863978136498
RPPEEERR	8	Unmodified	_RPPEEERR_					0	0	0		ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2;ENST00000368490.2_1_1:154300605-154303080:+|nuORF;nc|ENSG00000143515|P98198-4|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7918090820312	2	534.780879	1067.5472	-0.0096405	-5.1556E-06	-2.6301	-0.0014065	-2.6397	-0.0014117	534.7793583100339	19.578	0.32281	19.578	19.366	19.689	0					11	6	2	0	0	0	0.027866	1	441	441		30.504	0	1	32919			68425	5659	48013	48091	74304	74304					0.01613304900888579
RPPELLFIH	9	Unmodified	_RPPELLFIH_					0	0	0		RBBP4|p.G362R|1|0.12|ENSG00000162521|chr1:32672682-32672682|G/A|missense_variant	RBBP4|p.G362R|1|0.12|ENSG00000162521|chr1:32672682-32672682|G/A|missense_variant	RBBP4|p.G362R|1|0.12|ENSG00000162521|chr1:32672682-32672682|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.270263671875	2	561.326934	1120.63931	-0.78737	-0.00044197	1.5172	0.00085166	0.72985	0.00040969	561.3282200783044	26.329	0.61391	26.093	26.007	26.62	-0.23603					17	16	2	0	0	0	0.023775	1	1360	1360		38.806	21.441	1	358840			68426	19032	48014	48092	74305	74305					0.08382014985227215
RPPEVSGRE	9	Unmodified	_RPPEVSGRE_					0	0	0			REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF	REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7916259765625	2	513.76998	1025.52541	-0.78659	-0.00040413	0.90749	0.00046624	0.1209	6.2114E-05	513.770348562559	25.653	0.54638	25.618	25.351	25.898	-0.034395					31	12	3	0	0	0	0.023655	1	1228	1228		79.713	24.208	1	468090	+		68427	32796	48015	48093	74306	74306					0.013665001523349929
RPPFQLRLQQK	11	Unmodified	_RPPFQLRLQQK_					0	0	0			REV__ENSG00000206113|ENST00000635017|CFAP99	REV__ENSG00000206113|ENST00000635017|CFAP99	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.30908203125	3	470.949127	1409.82555	1.6611	0.00078228	-3.7609	-0.0017712	-2.0998	-0.00098889	470.9472048713722	17.012	0.80229	16.858	16.655	17.458	-0.15403					33	15	4	0	0	0	0.024809	1	178	178		22.562	6.0317	1	73522	+		68428	28701	48016	48094	74307	74307					0.13703212153723143
RPPGHSSKF	9	Unmodified	_RPPGHSSKF_					0	0	0		ENSG00000181652|ENST00000639579|ATG9B;nc|ENSG00000181652|Q674R7-2|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.77081298828125	2	506.769783	1011.52501	-0.55086	-0.00027916	3.4334	0.00174	2.8826	0.0014608	506.77141411605925	20.574	1.064	20.47	19.981	21.045	-0.10477					54	21	3	0	0	0	0.6504	1	559	559		49.442	2.6751	1	533810			68429	9058	48017	48095	74308	74308					0.019711252231331855
RPPGLYVK	8	Unmodified	_RPPGLYVK_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2613525390625	2	465.281995	928.549437	-0.56853	-0.00026453	-3.892	-0.0018109	-4.4605	-0.0020754	465.2800419606928	22.315	0.51345	22.315	22.152	22.665	0					17	10	2	0	0	0	0.027866	1	795	795		45.952	21.749	1	128840	+		68430	20536	48018	48096	74309	74309					0.08230385376657523
RPPGPGLR	8	Unmodified	_RPPGPGLR_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.2563171386719	2	425.256311	848.49807	0.2818	0.00011984	-0.10208	-4.3412E-05	0.17971	7.6423E-05	425.25616456688573	23.992	1.1277	24.068	23.647	24.775	0.076241					42	24	2	0	0	0	0.91239	2	944	944;954		50.025	7.5501	1	1320800	+		68431	25363	48019	48097	74310;74311	74310					0.06776061402604228
RPPGPGLR	8	Unmodified	_RPPGPGLR_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.256311	848.49807	-0.82514	-0.00035089	1.1238	0.00047791	0.29869	0.00012702	425.2566045860898	24.069	1.0927	24.069	23.737	24.83	0	0.0060421	0.00046072	NaN	50.025	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254200	+		68432	25363	48019	48097							0.06776061402604228
RPPGPGLR	8	Unmodified	_RPPGPGLR_					0	0	0			REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	REV__ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	425.256311	848.49807	-1.0245	-0.00043568	1.2291	0.00052268	0.2046	8.7006E-05	425.25668973070145	24.099	1.1923	24.052	23.699	24.891	-0.047148	-0.011282	0.00055026	NaN	50.025	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1027300	+		68433	25363	48019	48097							0.06776061402604228
RPPGQKIQ	8	Unmodified	_RPPGQKIQ_					0	0	0			REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.27459716796875	2	462.274701	922.534849	0.32382	0.0001497	-0.51439	-0.00023779	-0.19057	-8.8094E-05	462.27438369622	21.097	0.54057	20.902	20.632	21.172	-0.19577					35	10	4	0	0	0	0.97924	1	642	642		40.573	7.057	1	929770	+		68434	26163	48020	48098	74312	74312					0.07048313228506231
RPPHSVID	8	Unmodified	_RPPHSVID_					0	0	0		ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2619934082031	2	460.751059	919.487565	-0.90222	-0.0004157	0.89736	0.00041346	-0.0048597	-2.2391E-06	460.75155432861845	28.741	1.1687	28.741	28.318	29.487	0					50	28	3	0	0	0	0.027866	1	1640	1640		53.351	15.54	1	848340			68435	3274	48021	48099	74313	74313					0.024600339575158614
RPPHSVID	8	Unmodified	_RPPHSVID_					0	0	0		ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	460.751059	919.487565	-0.43385	-0.0001999	0.30773	0.00014179	-0.12613	-5.8113E-05	460.751215997402	28.768	1.533	28.764	28.416	29.949	-0.0042019	0.083437	0.00022338	NaN	53.351	66	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	807990			68436	3274	48021	48099							0.024600339575158614
RPPHSVID	8	Unmodified	_RPPHSVID_					0	0	0		ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.751059	919.487565	0.38821	0.00017887	-0.59986	-0.00027638	-0.21165	-9.7517E-05	460.7508151330257	28.456	1.1631	28.536	28.208	29.371	0.080811	-0.14416	-0.00061296	NaN	53.351	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695070			68437	3274	48021	48099							0.024600339575158614
RPPIGVKF	8	Unmodified	_RPPIGVKF_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.28277587890625	2	457.284537	912.554522	-0.43059	-0.0001969	-4.0058	-0.0018318	-4.4364	-0.0020287	457.2825555339341	34.648	0.82861	34.472	34.168	34.997	-0.17557					45	20	3	0	0	0	1.0574	1	2550	2550		25.45	0	1	2183600			68438	4345	48022	48100	74314	74314					0.09474689239277723
RPPIVWRW	8	Unmodified	_RPPIVWRW_					0	0	0			REV__chrX:154776324-154776804|216|12.36|0.53|4.55|+|2|DKC1,DKC1|1	REV__chrX:154776324-154776804|216|12.36|0.53|4.55|+|2|DKC1,DKC1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7770385742188	2	555.321986	1108.62942	-0.21694	-0.00012047	-1.6588	-0.00092116	-1.8757	-0.0010416	555.321039218853	76.384	0.50952	76.216	75.972	76.482	-0.16854					37	11	4	0	0	0	0.027866	1	9088	9088		25.45	0	1	271580	+		68439	19484	48023	48101	74315	74315					0.07944871770519057
RPPKPRLY	8	Unmodified	_RPPKPRLY_					0	0	0			REV__nc|ENSG00000179111|Q9BYE0|HES7	REV__nc|ENSG00000179111|Q9BYE0|HES7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.8157958984375	2	513.813993	1025.61343	-0.62035	-0.00031874	3.2051	0.0016468	2.5848	0.0013281	513.8154826987353	44.956	0.96857	44.745	44.184	45.153	-0.21109					59	25	4	0	0	0	1.0133	1	4228	4228		35.201	6.9464	1	2705300	+		68440	27238	48024	48102	74316	74316					0.10165165533612708
RPPKQKGRV	9	Unmodified	_RPPKQKGRV_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2470092773438	2	533.335624	1064.6567	-1.1025	-0.00058802	1.4399	0.00076797	0.3374	0.00017995	533.3364184846245	48.683	0.36868	48.582	48.434	48.803	-0.1008					11	9	2	0	0	0	0.024541	1	4858	4858		23.042	8.1776	1	102010			68441	10311	48025	48103	74317	74317					0.1269535531089332
RPPKSQDD	8	Unmodified	_RPPKSQDD_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.26153564453125	2	471.735606	941.456658	0.094187	4.4431E-05	-0.014571	-6.8738E-06	0.079616	3.7558E-05	471.7354346180964	26.438	0.627	26.519	26.131	26.758	0.081291					36	14	4	0	0	0	0.027866	1	1246	1246		60.972	5.4677	1	527280	+		68442	28456	48026	48104	74318	74318					-0.016411641473837335
RPPLAAHPR	9	Unmodified	_RPPLAAHPR_					0	0	0		ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7649841308594	2	507.801417	1013.58828	-0.6046	-0.00030702	0.40505	0.00020568	-0.19956	-0.00010133	507.80117429438604	31.899	0.79998	31.899	31.386	32.186	0					34	19	2	0	0	0	0.024436	1	2145	2145		38.806	3.6054	1	342160			68443	16037	48027	48105	74319	74319					0.08203110731028573
RPPLCFCSSW	10	Unmodified	_RPPLCFCSSW_					0	0	0		NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	NOTCH1|p.G1710Afs*88|1|0.41|ENSG00000148400|chr9:136503220-136503220|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	598.28955078125	2	598.272986	1194.53142	-1.1217	-0.00067106	-2.8707	-0.0017174	-3.9923	-0.0023885	598.2712091332753	26.581	0.96409	26.345	26.037	27.001	-0.23603					31	24	2	0	0	0	0.03519	1	1472	1472		42.396	24.134	1	97958			68444	18883	48028	48106	74320	74320					-0.058064409319968036
RPPLCMRIS	9	Unmodified	_RPPLCMRIS_					0	0	0			REV__ENST00000390654.7_2_5:177686746-178016941:-|nuORF	REV__ENST00000390654.7_2_5:177686746-178016941:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.777099609375	2	536.791346	1071.56814	-0.84286	-0.00045244	-0.057299	-3.0758E-05	-0.90016	-0.0004832	536.7911418095678	20.209	0.6857	20.104	19.884	20.569	-0.10477					30	13	3	0	0	0	0.024477	1	529	529		35.618	14.671	1	187610	+		68445	31580	48029	48107	74321	74321					0.0352185568456207
RPPLLVNI	8	Unmodified	_RPPLLVNI_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.27484130859375	2	461.297645	920.580737	0.35655	0.00016448	-0.41883	-0.0001932	-0.062277	-2.8728E-05	461.2972872229389	21.551	0.72216	21.374	20.918	21.64	-0.17721					25	14	2	0	0	0	0.027866	1	649	649		12.959	4.1369	1	128760	+		68446	24332	48030	48108	74322	74322					0.11726958410736188
RPPLMPFL	8	Unmodified	_RPPLMPFL_					0	0	0		ENST00000343262.8_1_16:2012226-2012518:-|nuORF	ENST00000343262.8_1_16:2012226-2012518:-|nuORF	ENST00000343262.8_1_16:2012226-2012518:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2623596191406	2	485.780773	969.546994	-0.63109	-0.00030657	3.6109	0.0017541	2.9798	0.0014475	485.782240481006	24.267	0.95731	24.267	23.651	24.608	0					36	21	2	0	0	0	0.027866	1	1058	1058		28.254	14.117	1	74419			68447	12527	48031	48109	74323	74323					0.0610021364733484
RPPLMPFL	8	Unmodified	_RPPLMPFL_					0	0	0		ENST00000343262.8_1_16:2012226-2012518:-|nuORF	ENST00000343262.8_1_16:2012226-2012518:-|nuORF	ENST00000343262.8_1_16:2012226-2012518:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.780773	969.546994	-0.16305	-7.9206E-05	2.8516	0.0013852	2.6885	0.001306	485.7819735112223	24.559	0.50351	24.344	24.089	24.592	-0.21511	0.088282	0.00039223	NaN	28.254	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610210			68448	12527	48031	48109							0.0610021364733484
RPPLMPFL	8	Unmodified	_RPPLMPFL_					0	0	0		ENST00000343262.8_1_16:2012226-2012518:-|nuORF	ENST00000343262.8_1_16:2012226-2012518:-|nuORF	ENST00000343262.8_1_16:2012226-2012518:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	485.780773	969.546994	2.2886	0.0011118	0.24034	0.00011675	2.5289	0.0012285	485.780691685972	24.389	0.74083	24.209	23.893	24.634	-0.18089	-0.0471	-0.0021447	NaN	28.254	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	971480			68449	12527	48031	48109							0.0610021364733484
RPPLPGLTY	9	Unmodified	_RPPLPGLTY_					0	0	0			REV__ENST00000561916.2_1_16:31213940-31214408:+|nuORF	REV__ENST00000561916.2_1_16:31213940-31214408:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2929382324219	2	507.292559	1012.57057	3.0875	0.0015663	3.8221	0.0019389	6.9096	0.0035052	507.29439199215295	17.959	0.58761	17.959	17.697	18.284	0					27	11	3	0	0	0	0.67308	1	218	218		47.916	3.5384	1	281450	+		68450	35184	48032	48110	74324	74324					0.06478350685506484
RPPLQKNL	8	Unmodified	_RPPLQKNL_					0	0	0		ENST00000439173.1_X:151928157-151928639:+|nuORF	ENST00000439173.1_X:151928157-151928639:+|nuORF	ENST00000439173.1_X:151928157-151928639:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.25634765625	2	483.298176	964.581799	-1.1398	-0.00055086	0.70091	0.00033875	-0.43889	-0.00021212	483.2983882505812	39.142	0.42858	39.166	38.956	39.385	0.023727					22	11	3	0	0	0	0.027866	1	3306	3306		12.959	0	1	250670			68451	14327	48033	48111	74325	74325					0.09809172779637265
RPPMWQKNA	9	Unmodified	_RPPMWQKNA_					0	0	0			REV__nc|ENSG00000258628|A8MT19|RHPN2P1	REV__nc|ENSG00000258628|A8MT19|RHPN2P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.320556640625	2	564.292568	1126.57058	0.22189	0.00012521	3.8674	0.0021824	4.0893	0.0023076	564.2943869185917	103.75	0.96961	103.63	103.4	104.37	-0.12724					40	24	3	0	0	0	0.024457	1	12896	12896		29.15	11.785	1	128810	+		68452	37180	48034	48112	74326	74326					0.012360274138927707
RPPNYGNP	8	Unmodified	_RPPNYGNP_					0	0	0			REV__nc|ENSG00000104774|O00754-2|MAN2B1	REV__nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2825927734375	2	457.727584	913.440614	-0.23973	-0.00010973	0.13063	5.9792E-05	-0.1091	-4.9937E-05	457.72772045739555	34.943	0.43626	34.993	34.762	35.198	0.050255					17	11	2	0	0	0	0.027866	1	2580	2580		50.025	12.865	1	163360	+		68453	21462	48035	48113	74327	74327					-0.01956825593629219
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	594.8220825195312	2	594.822212	1187.62987	-1.3363	-0.00079488	0.55975	0.00033295	-0.77659	-0.00046193	594.822522482451	53.623	1.4572	53.623	53.232	54.689	0					137	41	5	0	0	0	0.12713	7	5816	5791;5803;5816;5828;5843;5855;5866		106.68	21.72	1	13420000			68454	2590	48036	48114	74328;74329;74330;74331;74332;74333;74334	74330					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	594.8218383789062	2	594.822212	1187.62987	-1.2086	-0.00071888	0.40334	0.00023992	-0.80522	-0.00047896	594.8224665292765	53.711	1.8703	53.564	53.132	55.003	-0.14723					150	52	5	0	0	0	0.073523	7	5831	5771;5779;5791;5804;5831;5843;5855		114.89	29.033	1	12703000			68455	2590	48036	48114	74335;74336;74337;74338;74339;74340;74341	74339					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	594.8211059570312	2	594.822212	1187.62987	-0.73929	-0.00043975	-0.0017697	-1.0527E-06	-0.74106	-0.0004408	594.8221692705604	53.404	1.4624	53.499	53.161	54.623	0.095669					131	41	5	0	0	0	0.15312	5	5730	5684;5704;5717;5730;5744		104.01	29.182	1	12576000			68456	2590	48036	48114	74342;74343;74344;74345;74346	74345					0.043562019090586546
RPPPFSRLP	9	Unmodified	_RPPPFSRLP_					0	0	0			REV__ENST00000367029.4_1_1:209848883-209849382:+|nuORF	REV__ENST00000367029.4_1_1:209848883-209849382:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.8145141601562	2	533.811451	1065.60835	0.00092354	4.93E-07	2.2712	0.0012124	2.2722	0.0012129	533.8125151137867	103.95	0.95638	103.78	103.55	104.51	-0.16791					41	24	3	0	0	0	0.72875	1	12941	12941		44.117	6.9577	1	363870	+		68457	30998	48037	48115	74347	74347					0.07816861670994513
RPPPPPKP	8	Unmodified	_RPPPPPKP_					0	0	0			REV__ENST00000582707.5_1_18:158558-163316:+|nuORF	REV__ENST00000582707.5_1_18:158558-163316:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.266845703125	2	443.268887	884.523222	0.0055878	2.4769E-06	-4.3706	-0.0019374	-4.365	-0.0019349	443.26683980930903	26.19	0.74745	26.271	25.967	26.714	0.081293					51	17	4	0	0	0	0.93274	1	1262	1262		47.916	9.1095	1	1995700	+		68458	35543	48038	48116	74348	74348					0.07634116205178998
RPPPRQGY	8	Unmodified	_RPPPRQGY_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7748718261719	2	485.764501	969.514448	-0.9937	-0.00048271	-2.3367	-0.0011351	-3.3304	-0.0016178	485.7624710717617	23.002	0.65602	23.076	22.653	23.309	0.073954					18	14	2	0	0	0	0.027866	1	852	852		26.796	0	1	26261			68459	6025	48039	48117	74349	74349					0.028471425687030205
RPPPRTRE	8	Unmodified	_RPPPRTRE_					0	0	0		ENSG00000204160|ENST00000374142|ZDHHC18;nc|ENSG00000204160|Q9NUE0-2|ZDHHC18	ENSG00000204160|ENST00000374142|ZDHHC18	ENSG00000204160|ENST00000374142|ZDHHC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7883605957031	2	504.788507	1007.56246	1.2077	0.00060963	-1.0849	-0.00054764	0.1228	6.1986E-05	504.7878132032006	20.42	0.88666	20.489	20.119	21.005	0.068901					40	17	4	0	0	0	0.94517	1	505	505		45.952	3.5558	1	386570			68460	10306	48040	48118	74350	74350					0.0589821648875386
RPPPVPQVH	9	Unmodified	_RPPPVPQVH_					0	0	0		ENST00000436881.2_1_9:139742783-139743011:+|nuORF	ENST00000436881.2_1_9:139742783-139743011:+|nuORF	ENST00000436881.2_1_9:139742783-139743011:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7915649414062	2	513.795801	1025.57705	-0.97654	-0.00050174	-3.4581	-0.0017768	-4.4347	-0.0022785	513.7939858924851	25.56	0.75742	25.56	25.285	26.043	0					63	17	5	0	0	0	0.43973	1	1232	1232		63.306	1.1989	1	1496600			68461	14286	48041	48119	74351	74351					0.0652828863690047
RPPPVSSFQD	10	Unmodified	_RPPPVSSFQD_					0	0	0		ENST00000341690.10_1_16:84213598-84214685:-|nuORF;ENST00000541676.5_2_16:84213598-84214742:-|nuORF;ENST00000564774.5_1_16:84213598-84214368:-|nuORF	ENST00000341690.10_1_16:84213598-84214685:-|nuORF	ENST00000341690.10_1_16:84213598-84214685:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.2261962890625	2	565.285463	1128.55637	-0.16558	-9.3601E-05	-1.9061	-0.0010775	-2.0717	-0.0011711	565.7861943545628	35.263	0.1498	35.047	34.95	35.1	-0.21555					5	3	2	0	0	0	0.03519	1	2647	2647		19.997	0	1	54607			68462	12497	48042	48120	74352	74352					-0.002763465334282955
RPPPVSSFQD	10	Unmodified	_RPPPVSSFQD_					0	0	0		ENST00000341690.10_1_16:84213598-84214685:-|nuORF;ENST00000541676.5_2_16:84213598-84214742:-|nuORF;ENST00000564774.5_1_16:84213598-84214368:-|nuORF	ENST00000341690.10_1_16:84213598-84214685:-|nuORF	ENST00000341690.10_1_16:84213598-84214685:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	565.285463	1128.55637	-0.57403	-0.00032449	-0.71219	-0.00040259	-1.2862	-0.00072708	565.2847037680584	35.171	0.26513	34.984	34.835	35.1	-0.18675	-0.031732	0.0010626	NaN	4.6126	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42290			68463	12497	48042	48120							-0.002763465334282955
RPPQGIVVR	9	Unmodified	_RPPQGIVVR_					0	0	0			REV__ENST00000395474.7_2_3:49044614-49044830:+|nuORF	REV__ENST00000395474.7_2_3:49044614-49044830:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.795654296875	2	511.3169	1020.61925	-0.59843	-0.00030599	0.18889	9.6584E-05	-0.40953	-0.0002094	511.3168862333682	22.409	1.1706	22.409	21.723	22.894	0					56	24	4	0	0	0	0.024457	1	727	727		29.15	0	1	529700	+		68464	31700	48043	48121	74353	74353					0.10976264045280004
RPPQPMLIA	9	Unmodified	_RPPQPMLIA_					0	0	0			REV__ENST00000600988.1_1_19:36249429-36249696:+|nuORF	REV__ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.795654296875	2	511.794412	1021.57427	-0.77785	-0.0003981	4.1334	0.0021154	3.3555	0.0017173	511.79638010032426	21.892	0.66198	21.892	21.676	22.338	0					41	13	4	0	0	0	0.80658	1	727	727		38.806	0	1	681070	+		68465	35851	48044	48122	74354	74354					0.0643469718771712
RPPQRTLQNGL	11	Unmodified	_RPPQRTLQNGL_					0	0	0		ENST00000596070.1_1_19:6361585-6362062:+|nuORF;ENSG00000125656|ENST00000245816|CLPP	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.3690185546875	2	640.36511	1278.71567	4.1645	0.0026668	1.2201	0.00078129	5.3846	0.0034481	640.3658668057252	17.158	0.22272	17.158	17.028	17.25	0					11	4	3	0	0	0	1.0718	1	139	139		19.104	0	1	65835			68466	4125	48045	48123	74355	74355					0.08745786814574785
RPPREKAR	8	Unmodified	_RPPREKAR_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7881774902344	2	505.304324	1008.5941	-0.56635	-0.00028618	0.38368	0.00019387	-0.18268	-9.2307E-05	505.30435379473204	20.615	0.58123	20.511	20.079	20.661	-0.10477					19	11	2	0	0	0	0.027866	1	550	550		65.803	10.299	1	39054	+		68467	27136	48046	48124	74356	74356					0.0901420924269587
RPPRGKLAL	9	Unmodified	_RPPRGKLAL_					0	0	0			REV__ENST00000356166.10_3_16:30670409-30670715:+|nuORF	REV__ENST00000356166.10_3_16:30670409-30670715:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2969055175781	2	504.327268	1006.63998	3.3555	0.0016923	-3.9948	-0.0020147	-0.63936	-0.00032245	504.3253087047669	17.771	1.1275	17.771	17.498	18.626	0					60	22	5	0	0	0	0.024354	1	287	287		57.811	5.5121	1	3845600	+		68468	30787	48047	48125	74357	74357					0.13692854424925827
RPPRGLASPP	10	Unmodified	_RPPRGLASPP_					0	0	0		ENST00000402802.7_1_7:558637-558730:-|nuORF;ENST00000405692.2_3_7:558637-559858:-|nuORF	ENST00000402802.7_1_7:558637-558730:-|nuORF	ENST00000402802.7_1_7:558637-558730:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.7704467773438	2	524.306532	1046.59851	-0.66077	-0.00034645	-0.43344	-0.00022726	-1.0942	-0.0005737	524.3061178380416	30.738	1.4574	30.749	29.84	31.298	0.010279					69	34	3	0	0	0	0.03519	1	1990	1990		32.812	16.339	1	1027200			68469	13690	48048	48126	74358	74358					0.07707673665595394
RPPRPPGT	8	Unmodified	_RPPRPPGT_					0	0	0			REV__ENST00000355209.8_1_22:41940140-41940266:-|nuORF	REV__ENST00000355209.8_1_22:41940140-41940266:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.25225830078125	2	439.253769	876.492984	-1.1335	-0.00049788	-1.6389	-0.0007199	-2.7724	-0.0012178	439.2529593069474	90.17	0.99512	90.015	89.522	90.517	-0.1552					62	23	4	0	0	0	1.0574	1	11009	11009		18.324	0	1	1935000	+		68470	30771	48049	48127	74359	74359					0.049797575399907146
RPPSAEVAR	9	Unmodified	_RPPSAEVAR_					0	0	0			REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7955017089844	2	491.775065	981.535577	-0.98182	-0.00048283	1.3245	0.00065134	0.34265	0.00016851	491.7756205474615	29.057	0.44541	29.057	28.778	29.223	0					24	10	3	0	0	0	0.0242	1	1748	1748		69.628	3.1983	1	538500	+		68471	32147	48050	48128	74360	74360					0.04407107877557337
RPPSAEVAR	9	Unmodified	_RPPSAEVAR_					0	0	0			REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.775065	981.535577	-1.3491	-0.00066343	-0.7447	-0.00036623	-2.0938	-0.0010297	491.7748906247113	29.465	0.38971	29.22	28.967	29.357	-0.24524	0.17239	-0.0013905	NaN	69.628	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67754	+		68472	32147	48050	48128							0.04407107877557337
RPPSAEVAR	9	Unmodified	_RPPSAEVAR_					0	0	0			REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.775065	981.535577	-0.10508	-5.1676E-05	-3.0658	-0.0015077	-3.1709	-0.0015594	491.7736620028356	29.272	0.46447	29.123	28.912	29.377	-0.14952	0.075515	-0.0036735	NaN	69.628	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86011	+		68473	32147	48050	48128							0.04407107877557337
RPPSGYCVIS	10	Unmodified	_RPPSGYCVIS_					0	0	0		ENST00000216039.9_1_22:39081989-39082295:-|nuORF	ENST00000216039.9_1_22:39081989-39082295:-|nuORF	ENST00000216039.9_1_22:39081989-39082295:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7686767578125	2	539.771134	1077.52771	-0.59382	-0.00032052	-3.1346	-0.0016919	-3.7284	-0.0020125	539.7691729189576	19.195	1.2683	19.077	18.463	19.731	-0.11872					41	25	2	0	0	0	1.0393	1	375	375		40.778	3.6191	1	203440			68474	11152	48051	48129	74361	74361					-0.007947874342107752
RPPSPHRQGA	10	Unmodified	_RPPSPHRQGA_					0	0	0			REV__SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|37|2|anti-sense	REV__SVA_D_dup717|chr9:87758582-87759887:-|6.347717304225407|0.0972128594367668|6.03|518.0|37|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.7974853515625	2	551.796863	1101.57917	2.8275	0.0015602	-0.37394	-0.00020634	2.4536	0.0013539	551.7967619970995	18.156	0.39271	18.156	17.94	18.333	0					22	7	4	0	0	0	1.118	1	265	265		30.318	1.1477	1	214510	+		68475	37639	48052	48130	74362	74362					0.03244717374718675
RPPSRPLLW	9	Unmodified	_RPPSRPLLW_					0	0	0			REV__ENSG00000196581|ENST00000378191|AJAP1	REV__ENSG00000196581|ENST00000378191|AJAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2700805664062	2	561.33255	1120.65055	-0.25773	-0.00014467	0.93063	0.0005224	0.6729	0.00037772	561.331791917161	26.297	0.24301	26.129	26.019	26.262	-0.16816					12	6	3	0	0	0	0.024457	1	1353	1353		37.159	10.466	1	123220	+		68476	28199	48053	48131	74363	74363					0.09504837079362005
RPPSSQCECD	10	Unmodified	_RPPSSQCECD_					0	0	0		ENST00000587492.5_1_19:56826071-56826278:-|nuORF	ENST00000587492.5_1_19:56826071-56826278:-|nuORF	ENST00000587492.5_1_19:56826071-56826278:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2703247070312	2	561.221148	1120.42774	-1.2827	-0.0007199	-2.1958	-0.0012323	-3.4785	-0.0019522	561.2215224537599	26.057	0.43618	25.894	25.798	26.234	-0.16331					24	13	3	0	0	0	0.03519	1	1254	1254		47.657	30.292	1	815390			68477	17272	48054	48132	74364	74364					-0.12765392830328892
RPPTLPHV	8	Unmodified	_RPPTLPHV_					0	0	0		ENST00000271857.6_1_1:153749171-153750656:+|nuORF	ENST00000271857.6_1_1:153749171-153750656:+|nuORF	ENST00000271857.6_1_1:153749171-153750656:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.25457763671875	2	458.771794	915.529036	-0.32862	-0.00015076	-3.6127	-0.0016574	-3.9413	-0.0018082	458.7705723180635	20.664	0.76801	20.559	20.277	21.045	-0.10477					23	15	2	0	0	0	0.027866	1	607	607		25.45	0	1	61706			68478	11646	48055	48133	74365	74365					0.06789214716843617
RPPVLMMGA	9	Unmodified	_RPPVLMMGA_					0	0	0		ENST00000594247.5_1_19:17379766-17388064:+|nuORF	ENST00000594247.5_1_19:17379766-17388064:+|nuORF	ENST00000594247.5_1_19:17379766-17388064:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2620849609375	2	486.26189	970.509228	-1.1416	-0.00055511	1.6639	0.00080907	0.52227	0.00025396	486.26252371555324	24.32	1.2386	24.273	23.869	25.108	-0.047148					63	27	3	0	0	0	0.88411	1	1031	1031		33.516	0	1	861780			68479	17403	48056	48134	74366	74366					0.022793793902224024
RPPVRRAI	8	Unmodified	_RPPVRRAI_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.27911376953125	2	482.811785	963.609017	0.17968	8.6749E-05	2.98	0.0014388	3.1597	0.0015255	482.81282850100206	68.056	0.74374	67.767	67.511	68.255	-0.28834					26	18	2	0	0	0	0.027866	1	8081	8081		19.36	11.129	1	417250			68480	11068	48057	48135	74367	74367					0.1257570111069981
RPQALWAV	8	Unmodified	_RPQALWAV_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.78814697265625	2	470.771794	939.529036	0.41502	0.00019538	-3.3495	-0.0015769	-2.9345	-0.0013815	470.7701975686385	23.78	0.75414	23.857	23.518	24.273	0.076241					24	16	2	0	0	0	0.027866	1	950	950		35.201	0	1	147640			68481	18142	48058	48136	74368	74368					0.056852147168342526
RPQAPATVGL	10	Unmodified	_RPQAPATVGL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.2928771972656	2	505.293091	1008.57163	-1.0868	-0.00054915	0.064709	3.2697E-05	-1.0221	-0.00051645	505.29307690739586	44.424	1.1575	44.424	44.056	45.214	0					86	33	3	0	0	0	0.45418	1	4251	4251		93.143	33.025	1	7891000			68482	2498	48059	48137	74369	74369					0.06768565054414921
RPQAPATVGL	10	Unmodified	_RPQAPATVGL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.29296875	2	505.293091	1008.57163	-1.3084	-0.00066111	0.26929	0.00013607	-1.0391	-0.00052504	505.2932072923109	44.597	1.2178	44.449	44.094	45.312	-0.1488					73	35	3	0	0	0	0.56936	1	4256	4256		80.455	18.347	1	7376900			68483	2498	48059	48137	74370	74370					0.06768565054414921
RPQAPATVGL	10	Unmodified	_RPQAPATVGL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.293091	1008.57163	-0.28442	-0.00014372	-0.58461	-0.0002954	-0.86903	-0.00043912	505.29278485993547	44.447	1.1278	44.484	44.176	45.304	0.036903	0.031739	-0.0004742	NaN	93.143	76	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6988500			68484	2498	48059	48137							0.06768565054414921
RPQARMLL	8	Unmodified	_RPQARMLL_					0	0	0		nc|ENSG00000005206|Q8TCT7-2|SPPL2B;nc|ENSG00000005206|Q8TCT7-4|SPPL2B;ENSG00000005206|ENST00000613503|SPPL2B	nc|ENSG00000005206|Q8TCT7-2|SPPL2B	nc|ENSG00000005206|Q8TCT7-2|SPPL2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.29132080078125	2	492.792204	983.569854	-0.1619	-7.9785E-05	-3.1411	-0.0015479	-3.303	-0.0016277	492.7903250265132	27.197	1.1495	27.197	26.615	27.765	0					44	29	2	0	0	0	0.027866	1	1413	1413		37.028	4.2161	1	401970			68485	764	48060	48138	74371	74371					0.07741232764817596
RPQARMLL	8	Unmodified	_RPQARMLL_					0	0	0		nc|ENSG00000005206|Q8TCT7-2|SPPL2B;nc|ENSG00000005206|Q8TCT7-4|SPPL2B;ENSG00000005206|ENST00000613503|SPPL2B	nc|ENSG00000005206|Q8TCT7-2|SPPL2B	nc|ENSG00000005206|Q8TCT7-2|SPPL2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.792204	983.569854	-0.40551	-0.00019983	-3.1738	-0.001564	-3.5793	-0.0017639	492.7904406811239	27.12	0.81101	27.107	26.911	27.722	-0.012981	-0.044791	-1.1037E-05	NaN	62.978	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363180			68486	764	48060	48138							0.07741232764817596
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.77716064453125	2	492.777274	983.539994	0.27428	0.00013516	-0.36585	-0.00018028	-0.09157	-4.5124E-05	492.7769502575609	46.451	0.87701	46.451	46.126	47.003	0					66	23	4	0	0	0	0.34489	1	4588	4588		69.628	16.691	1	5183100			68487	1476;13528	48061	48139	74372	74372					0.04756572300470907
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7770690917969	2	492.777274	983.539994	-0.85556	-0.0004216	0.78531	0.00038698	-0.070256	-3.4621E-05	492.7775408736764	46.547	0.99136	46.394	46.061	47.052	-0.15301					76	26	4	0	0	0	0.26966	2	4609	4571;4609		79.713	24.208	1	6364200			68488	1476;13528	48061	48139	74373;74374	74374					0.04756572300470907
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.7771301269531	2	492.777274	983.539994	-0.20288	-9.9975E-05	0.12511	6.165E-05	-0.077773	-3.8325E-05	492.77720958958423	46.421	0.85287	46.472	46.096	46.949	0.051395					68	23	4	0	0	0	0.22902	3	4531	4520;4531;4543		85.161	28.44	1	6411600			68489	1476;13528	48061	48139	74375;74376;74377	74376					0.04756572300470907
RPQASHQLL	9	Unmodified	_RPQASHQLL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2960815429688	2	525.296165	1048.57778	-1.809	-0.00095024	1.5082	0.00079227	-0.30073	-0.00015797	525.2971536986481	28.968	0.87311	28.968	28.655	29.528	0					52	21	4	0	0	0	0.42604	2	1734	1725;1734		64.207	13.015	1	2429500			68490	4179	48062	48140	74378;74379	74379					0.05543083285942885
RPQASHQLL	9	Unmodified	_RPQASHQLL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2963256835938	2	525.296165	1048.57778	-0.77364	-0.00040639	0.6171	0.00032416	-0.15654	-8.223E-05	525.2966344032756	28.944	0.75496	28.947	28.672	29.427	0.0031376					44	18	3	0	0	0	0.34489	2	1727	1712;1727		69.628	23.655	1	2420900			68491	4179	48062	48140	74380;74381	74381					0.05543083285942885
RPQASHQLL	9	Unmodified	_RPQASHQLL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2968139648438	2	525.296165	1048.57778	0.10642	5.5904E-05	0.44983	0.0002363	0.55626	0.0002922	525.2966228545961	28.72	0.95996	28.801	28.411	29.371	0.080811					52	23	3	0	0	0	0.18994	3	1650	1640;1650;1664		90.601	30.483	1	2019300			68492	4179	48062	48140	74382;74383;74384	74383					0.05543083285942885
RPQAVPEEA	9	Unmodified	_RPQAVPEEA_					0	0	0		ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000152076|Q96LY2|CCDC74B;ENST00000496704.1_1_2:130897130-130898075:-|nuORF	ENSG00000152076|ENST00000409943|CCDC74B	ENSG00000152076|ENST00000409943|CCDC74B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7611083984375	2	498.759081	995.503609	0.42535	0.00021215	4.2157	0.0021026	4.641	0.0023147	498.7610943725598	16.65	0.70108	16.502	16.378	17.079	-0.14753					33	24	2	0	0	0	0.98697	1	89	89		23.042	2.5607	1	169270			68493	6246	48063	48141	74385	74385					0.005676954037539872
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7724914550781	2	477.771991	953.529429	0.028757	1.3739E-05	-1.234	-0.00058958	-1.2053	-0.00057584	477.77165265647795	44.795	1.3627	44.795	44.151	45.514	0					117	39	5	0	0	0	0.15366	4	4316	4283;4304;4316;4328		98.629	24.374	1	12803000			68494	10060	48064	48142	74386;74387;74388;74389	74388					0.05080589646047429
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7724304199219	2	477.771991	953.529429	-0.58881	-0.00028132	-0.63805	-0.00030484	-1.2269	-0.00058616	477.7719682646587	44.927	1.1932	44.778	44.256	45.449	-0.1488					108	34	6	0	0	0	0.26966	4	4310	4286;4297;4310;4322		79.713	20.931	1	14072000			68495	10060	48064	48142	74390;74391;74392;74393	74392					0.05080589646047429
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.77239990234375	2	477.771991	953.529429	-0.11572	-5.5286E-05	-0.9542	-0.00045589	-1.0699	-0.00051118	477.77176663704483	44.796	1.2979	44.833	44.241	45.539	0.0369					108	37	5	0	0	0	0.31037	2	4246	4246;4259		74.255	18.292	1	13985000			68496	10060	48064	48142	74394;74395	74394					0.05080589646047429
RPQDQHCE	8	Unmodified	_RPQDQHCE_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.77099609375	2	506.71689	1011.41923	-0.55383	-0.00028063	-0.10175	-5.1558E-05	-0.65558	-0.00033219	506.71662257798755	20.776	0.42398	20.671	20.522	20.946	-0.10477					12	8	2	0	0	0	0.027866	1	571	571		37.159	0.13063	1	45122	+		68497	21931	48065	48143	74396	74396					-0.08602578684644868
RPQELVNL	8	Unmodified	_RPQELVNL_					0	0	0		CON__Q3T052	CON__Q3T052	CON__Q3T052	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7748718261719	2	484.779816	967.545079	-0.56371	-0.00027328	0.36033	0.00017468	-0.20338	-9.8593E-05	484.7798447430822	23.68	1.1571	23.757	23.07	24.228	0.076241					53	26	3	0	0	0	0.027866	1	852	852		29.15	3.6994	1	437430		+	68498	555	48066	48144	74397	74397					0.06000876163091107
RPQERARPA	9	Unmodified	_RPQERARPA_					0	0	0			REV__ENSG00000110446|ENST00000227880|SLC15A3	REV__ENSG00000110446|ENST00000227880|SLC15A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.3270263671875	2	540.804688	1079.59482	-0.43663	-0.00023613	2.4215	0.0013096	1.9849	0.0010734	540.8058982934951	49.323	0.48913	49.043	48.791	49.28	-0.27977					20	12	2	0	0	0	0.024344	1	4896	4896		64.207	0	1	238340	+		68499	21859	48067	48145	74398	74398					0.05821003891765031
RPQERGVDY	9	Unmodified	_RPQERGVDY_					0	0	0			REV__ASPHD2|p.H77D|1|0.25|ENSG00000128203|chr22:26433844-26433844|C/G|missense_variant	REV__ASPHD2|p.H77D|1|0.25|ENSG00000128203|chr22:26433844-26433844|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2985229492188	2	560.280712	1118.54687	-0.88912	-0.00049815	1.3651	0.00076485	0.476	0.00026669	560.2811200659268	38.341	0.10152	38.162	38.102	38.203	-0.17929					4	2	2	0	0	0	0.024257	1	3162	3162		77.318	25.982	1	79981	+		68500	19177	48068	48146	74399	74399					-0.007661148189527012
RPQFPHVI	8	Unmodified	_RPQFPHVI_					0	0	0			REV__ENSG00000075073|ENST00000373306|TACR2	REV__ENSG00000075073|ENST00000373306|TACR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2625732421875	2	497.285069	992.555585	-0.97495	-0.00048483	-1.0274	-0.00051091	-2.0023	-0.00099574	497.28409795561566	48.562	1.087	48.286	47.851	48.938	-0.27598					48	29	3	0	0	0	0.027866	1	4811	4811		54.765	0	1	261390	+		68501	20538	48069	48147	74400	74400					0.05900903608187491
RPQGGQDIL	9	Unmodified	_RPQGGQDIL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2666931152344	2	492.267073	982.519593	1.3774	0.00067803	-0.9994	-0.00049197	0.37796	0.00018606	492.26625660966	37.134	1.1452	37.134	36.724	37.869	0					75	30	4	0	0	0	0.33245	1	3025	3025		71.296	2.811	1	12836000			68502	8589	48070	48148	74401	74401					0.027634016406636874
RPQGGQDIL	9	Unmodified	_RPQGGQDIL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2666015625	2	492.267073	982.519593	0.21205	0.00010438	-0.064867	-3.1932E-05	0.14718	7.2451E-05	492.2666524696594	37.019	0.98215	36.955	36.47	37.452	-0.063385					77	25	5	0	0	0	0.12602	1	2978	2978		104.75	10.74	1	12205000			68503	8589	48070	48148	74402	74402					0.027634016406636874
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.3060607910156	2	484.306001	966.597449	-0.51167	-0.00024781	-0.041416	-2.0058E-05	-0.55309	-0.00026787	484.30582802562594	30.679	0.79275	30.688	30.331	31.124	0.0086708					49	18	4	0	0	0	0.59099	1	1979	1979		53.351	12.573	1	1632200			68504	10100	48071	48149	74403	74403					0.11281459296708363
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.3059997558594	2	484.306001	966.597449	-0.97528	-0.00047233	0.33778	0.00016359	-0.63749	-0.00030874	484.3060247578424	30.488	0.66314	30.562	30.254	30.917	0.074314					38	15	3	0	0	0	0.72875	1	1914	1914		44.117	5.3107	1	1748600			68505	10100	48071	48149	74404	74404					0.11281459296708363
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.306001	966.597449	-0.28401	-0.00013755	-0.49257	-0.00023855	-0.77657	-0.0003761	484.30600355752154	30.73	0.34233	30.486	30.323	30.666	-0.24415	-0.11986	-0.00068967	NaN	53.351	11	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41862			68506	10100	48071	48149							0.11281459296708363
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.306001	966.597449	0.12239	5.9276E-05	0.2818	0.00013648	0.40419	0.00019575	484.3059774746809	30.748	0.29697	30.597	30.47	30.767	-0.15085	-0.0087581	6.0389E-05	NaN	53.351	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47090			68507	10100	48071	48149							0.11281459296708363
RPQHGALR	8	Unmodified	_RPQHGALR_					0	0	0		ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7702941894531	2	467.770117	933.525681	3.4025	0.0015916	-3.5263	-0.0016495	-0.12375	-5.7888E-05	467.76843633358493	17.869	0.93027	17.869	17.647	18.577	0					33	18	2	0	0	0	0.65272	1	227	227		71.378	13.567	1	1027900			68508	17218	48072	48150	74405	74405					0.05625964662851857
RPQHGALR	8	Unmodified	_RPQHGALR_					0	0	0		ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.7702941894531	2	467.770117	933.525681	0.51437	0.00024061	-0.55072	-0.00025761	-0.036349	-1.7003E-05	467.7697696656288	18.064	1.1801	17.932	17.514	18.694	-0.13147					52	23	4	0	0	0	0.56067	3	235	225;235;263		79.939	16.961	1	896940			68509	17218	48072	48150	74406;74407;74408	74407					0.05625964662851857
RPQHKVRG	8	Unmodified	_RPQHKVRG_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1;ENST00000285383.6_1_7:6895119-6895377:-|nuORF	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2889709472656	2	489.291217	976.567881	2.736	0.0013387	-2.8536	-0.0013962	-0.11751	-5.7495E-05	489.28970896056313	19.182	1.276	19.249	18.553	19.829	0.066195					56	25	3	0	0	0	0.97924	1	320	320		40.573	8.6178	1	215310			68510	3017	48073	48151	74409	74409					0.078659400712354
RPQIKIYIDS	10	Unmodified	_RPQIKIYIDS_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.2306213378906	3	411.571434	1231.69247	0.08538	3.514E-05	0.97037	0.00039938	1.0557	0.00043452	411.57181543439	27.38	0.54057	27.367	27.067	27.608	-0.012983					27	14	2	0	0	0	0.03519	1	1507	1507		26.063	5.0311	1	218670			68511	2462	48074	48152	74410	74410					0.0858934797722668
RPQKIAAL	8	Unmodified	_RPQKIAAL_					0	0	0		ENST00000393992.5_2_16:67244178-67260689:-|nuORF	ENST00000393992.5_2_16:67244178-67260689:-|nuORF	ENST00000393992.5_2_16:67244178-67260689:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2082214355469	2	448.787444	895.560336	-0.16131	-7.2396E-05	0.42005	0.00018851	0.25874	0.00011612	448.78749601790304	31.93	0.67061	31.93	31.669	32.34	0					32	16	3	0	0	0	0.027866	1	2217	2217		13.775	0	1	560070			68512	13479	48075	48153	74411	74411					0.10837787750938332
RPQKTHSWF	9	Unmodified	_RPQKTHSWF_					0	0	0			REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	593.8088989257812	2	593.809439	1185.60433	-1.1797	-0.00070051	0.12754	7.5732E-05	-1.0522	-0.00062478	593.809614267033	21.683	0.90701	21.593	21.255	22.162	-0.090092					67	18	5	0	0	0	0.56934	1	673	673		54.776	1.8396	1	3550700	+		68513	33593	48076	48154	74412	74412					0.018947721772747173
RPQLPQVL	8	Unmodified	_RPQLPQVL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.S837Y|1|0.26|ENSG00000127463|chr1:19222701-19222701|G/T|missense_variant;ENSG00000076321|ENST00000209884|KLHL20;nc|ENSG00000076321|Q9Y2M5-2|KLHL20	nc|ENSG00000127463|Q8N766-4|EMC1;ENSG00000076321|ENST00000209884|KLHL20	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7929992675781	2	475.792727	949.5709	-0.019626	-9.3378E-06	0.45006	0.00021413	0.43043	0.0002048	475.7926660800698	56.41	1.7741	56.246	55.658	57.432	-0.16432					76	48	2	0	0	0	0.81662	1	6268	6268		57.811	9.8957	1	2198400			68514	4245;1581	48077	48155	74413	74413					0.09409770405375184
RPQLQRQVL	9	Unmodified	_RPQLQRQVL_					0	0	0		ENST00000497613.2_1_8:145658938-145666334:-|nuORF;ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.3455810546875	2	569.346189	1136.67783	-1.518	-0.00086426	1.1476	0.00065338	-0.37039	-0.00021088	569.3467426041186	35.713	0.67487	35.713	35.455	36.129	0					46	17	4	0	0	0	0.22754	1	2773	2773		85.359	22.053	1	2232400			68515	6851	48078	48156	74414	74414					0.114953206197697
RPQLQRQVL	9	Unmodified	_RPQLQRQVL_					0	0	0		ENST00000497613.2_1_8:145658938-145666334:-|nuORF;ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.3455810546875	2	569.346189	1136.67783	-1.1803	-0.00067197	0.84779	0.00048269	-0.33246	-0.00018929	569.3466180958806	35.578	0.71264	35.556	35.271	35.984	-0.021763					44	18	4	0	0	0	0.25032	2	2738	2729;2738		82.305	32.863	1	2098900			68516	6851	48078	48156	74415;74416	74416					0.114953206197697
RPQLQRQVL	9	Unmodified	_RPQLQRQVL_					0	0	0		ENST00000497613.2_1_8:145658938-145666334:-|nuORF;ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENST00000497613.2_1_8:145658938-145666334:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.3456420898438	2	569.346189	1136.67783	-1.1575	-0.00065904	0.6358	0.00036199	-0.52174	-0.00029705	569.3465287626993	35.635	0.65099	35.679	35.42	36.071	0.04406					51	16	5	0	0	0	0.4752	1	2712	2712		60.972	20.194	1	2042100			68517	6851	48078	48156	74417	74417					0.114953206197697
RPQPEGSL	8	Unmodified	_RPQPEGSL_					0	0	0			REV__ENSG00000121764|ENST00000403528|HCRTR1	REV__ENSG00000121764|ENST00000403528|HCRTR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.23553466796875	2	442.235242	882.45593	-0.187	-8.2699E-05	0.095085	4.205E-05	-0.091918	-4.0649E-05	442.2352870999212	33.992	1.0781	33.992	33.59	34.668	0					75	27	4	0	0	0	0.65272	1	2487	2487		71.378	0.082209	1	10490000	+		68518	22607	48079	48157	74418	74418					0.010000412035765294
RPQPFMGVP	9	Unmodified	_RPQPFMGVP_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.7723388671875	2	514.770937	1027.52732	2.3427	0.0012059	1.2519	0.00064447	3.5946	0.0018504	514.7714515870559	18.358	0.4896	18.358	18.136	18.626	0					20	9	3	0	0	0	0.72875	1	288	288		44.117	7.0883	1	198380			68519	3763	48080	48158	74419	74419					0.014658376366014636
RPQPFMGVP	9	Unmodified	_RPQPFMGVP_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.770937	1027.52732	0.72251	0.00037193	-3.7829	-0.0019473	-3.0604	-0.0015754	514.7687551477403	18.445	0.29592	18.289	18.05	18.346	-0.15637	-0.067929	-0.006343	NaN	44.117	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10513			68520	3763	48080	48158							0.014658376366014636
RPQPGPTP	8	Unmodified	_RPQPGPTP_					0	0	0		ENST00000500914.6_1_4:174090049-174090625:-|nuORF	ENST00000500914.6_1_4:174090049-174090625:-|nuORF	ENST00000500914.6_1_4:174090049-174090625:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2562561035156	2	425.232502	848.450451	-0.19486	-8.2861E-05	0.89811	0.00038191	0.70325	0.00029904	425.23322240519343	35.956	1.0368	35.998	35.341	36.377	0.041576					68	27	4	0	0	0	0.027866	1	2682	2682		25.45	0	1	499910			68521	15652	48081	48159	74420	74420					0.020163624117685686
RPQPGRENF	9	Unmodified	_RPQPGRENF_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.7826538085938	2	550.783422	1099.55229	-0.84906	-0.00046765	0.20109	0.00011075	-0.64797	-0.00035689	550.7836198687271	27.063	3.0246	27.05	26.052	29.076	-0.012983					93	75	2	0	0	0	0.16468	1	1432	1432		96.19	0.14271	1	3336100			68522	6694	48082	48160	74421	74421					0.006496087635014192
RPQPLWRTRS	10	Unmodified	_RPQPLWRTRS_					0	0	0			REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.9154357910156	3	432.914305	1295.72109	-0.41842	-0.00018114	2.0432	0.00088454	1.6248	0.0007034	432.9154714908963	32.501	1.431	32.513	31.863	33.294	0.011795					122	37	5	0	0	0	1.1314	1	2253	2253		27.047	0.29761	1	6600900	+		68523	34892	48083	48161	74422	74422					0.08505510397026228
RPQPPNWGH	9	Unmodified	_RPQPPNWGH_					0	0	0		ENSG00000105261|ENST00000633214|OVOL3	ENSG00000105261|ENST00000633214|OVOL3	ENSG00000105261|ENST00000633214|OVOL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.7899780273438	2	544.772857	1087.53116	-2.2207	-0.0012098	2.6843	0.0014623	0.46363	0.00025257	544.7741792709899	49.223	0.4068	49.297	49.096	49.503	0.074196					17	10	2	0	0	0	0.024325	1	4988	4988		50.025	15.852	1	267520			68524	2653	48084	48162	74423	74423					-0.009103565453415285
RPQPQPLW	8	Unmodified	_RPQPQPLW_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2789916992188	2	511.282526	1020.5505	2.4914	0.0012738	4.0623	0.002077	6.5537	0.0033508	511.2844956448087	19.397	0.5432	19.463	19.044	19.587	0.066195					14	10	2	0	0	0	0.027866	1	328	328		37.028	15.069	1	23617	+		68525	23365	48085	48163	74424	74424					0.04104599745562609
RPQPQTLQL	9	Unmodified	_RPQPQTLQL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7893676757812	2	540.811648	1079.60874	-0.85694	-0.00046344	0.2222	0.00012017	-0.63473	-0.00034327	540.8116350368315	46.685	0.62027	46.737	46.441	47.061	0.051395					38	16	3	0	0	0	0.024	1	4585	4585		78.264	6.3863	1	1389800			68526	2587	48086	48164	74425	74425					0.07212236600184951
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3059692382812	2	527.306198	1052.59784	-1.4708	-0.00077554	1.2608	0.00066482	-0.20998	-0.00011072	527.3067135170797	28.133	0.68582	28.133	27.844	28.53	0					40	16	3	0	0	0	0.2508	2	1623	1623;1634		82.241	32.216	1	1245000			68527	5389	48087	48165	74426;74427	74426					0.07364834225904815
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3060913085938	2	527.306198	1052.59784	-0.74213	-0.00039133	0.57618	0.00030383	-0.16594	-8.7503E-05	527.3063041813716	28.109	0.91324	28.105	27.545	28.458	-0.0042019					50	22	4	0	0	0	0.2508	1	1606	1606		82.241	23.459	1	1290400			68528	5389	48087	48165	74428	74428					0.07364834225904815
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3057861328125	2	527.306198	1052.59784	-0.36037	-0.00019003	0.023326	1.23E-05	-0.33704	-0.00017773	527.3060825173021	27.887	0.68953	27.969	27.722	28.411	0.081293					44	16	4	0	0	0	0.15029	2	1542	1531;1542		99.375	30.588	1	1367300			68529	5389	48087	48165	74429;74430	74430					0.07364834225904815
RPQQKQLS	8	Unmodified	_RPQQKQLS_					0	0	0		ENST00000383276.1_1_18:19180645-19180702:-|nuORF	ENST00000383276.1_1_18:19180645-19180702:-|nuORF	ENST00000383276.1_1_18:19180645-19180702:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2908630371094	2	492.78289	983.551228	-0.22995	-0.00011332	0.024345	1.1997E-05	-0.20561	-0.00010132	492.7829278563097	20.049	0.68623	20.049	19.782	20.468	0					30	13	3	0	0	0	0.027866	1	510	510		40.573	1.7665	1	590390			68530	13366	48088	48166	74431	74431					0.05879394394617066
RPQQPSPRT	9	Unmodified	_RPQQPSPRT_					0	0	0		ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7919921875	2	533.791247	1065.56794	-0.12907	-6.8895E-05	1.3392	0.00071488	1.2102	0.00064598	533.7918260845735	19.575	1.1525	19.575	19.268	20.42	0					45	23	3	0	0	0	0.45795	1	428	428		62.107	12.083	1	499020			68531	11824	48089	48167	74432	74432					0.037778952805638255
RPQQPSPRT	9	Unmodified	_RPQQPSPRT_					0	0	0		ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.791748046875	2	533.791247	1065.56794	-0.65872	-0.00035162	1.8864	0.0010069	1.2277	0.00065533	533.7921184992395	19.841	1.2075	19.723	19.348	20.555	-0.11872					52	24	4	0	0	0	0.5973	1	449	449		52.937	3.4007	1	416900			68532	11824	48089	48167	74433	74433					0.037778952805638255
RPQRFAYY	8	Unmodified	_RPQRFAYY_					0	0	0		ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	MSMS	OPSCC_39_ClassI_Rep-1	1	550.782958984375	2	550.785433	1099.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.149	1	27.149	26.649	27.649	0								0	0	0	0.34203	1	1454	1454		74.517	6.0319	1				68533	5307	48090	48168	74434	74434					0.010516982572426059
RPQRFAYY	8	Unmodified	_RPQRFAYY_					0	0	0		ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	MSMS	OPSCC_39_ClassI_Rep-3	3	550.783203125	2	550.785433	1099.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.92	1	27.001	26.501	27.501	0.081293								0	0	0	0.33229	1	1369	1369		83.287	22.315	1				68534	5307	48090	48168	74435	74435					0.010516982572426059
RPQRLLQAR	9	Unmodified	_RPQRLLQAR_					0	0	0		ENST00000427410.6_1_1:41236509-41236770:+|nuORF	ENST00000427410.6_1_1:41236509-41236770:+|nuORF	ENST00000427410.6_1_1:41236509-41236770:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.3117065429688	2	569.351806	1136.68906	-1.6195	-0.00092207	1.1682	0.00066514	-0.45126	-0.00025693	569.3523269249479	30.93	0.66517	30.93	30.592	31.257	0					31	15	3	0	0	0	0.024323	1	2049	2049		53.351	7.3792	1	330470			68535	14110	48091	48169	74436	74436					0.12618142713881753
RPQRLLQAR	9	Unmodified	_RPQRLLQAR_					0	0	0		ENST00000427410.6_1_1:41236509-41236770:+|nuORF	ENST00000427410.6_1_1:41236509-41236770:+|nuORF	ENST00000427410.6_1_1:41236509-41236770:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.351806	1136.68906	-1.276	-0.00072651	0.79417	0.00045216	-0.48185	-0.00027434	569.3521042815732	30.6	0.66743	30.674	30.42	31.087	0.074314	-0.22437	3.3641E-05	NaN	53.351	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265170			68536	14110	48091	48169							0.12618142713881753
RPQRPRDDF	9	Unmodified	_RPQRPRDDF_					0	0	0			REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8088989257812	2	593.807428	1185.6003	-1.733	-0.0010291	4.2793	0.0025411	2.5463	0.001512	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	0.45795	1	846	846		62.107	1.1355	1	2217700	+		68537	31761	48092	48170	74437	74437					0.014926826835562679
RPQRPRDDF	9	Unmodified	_RPQRPRDDF_					0	0	0			REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.8088989257812	2	593.807428	1185.6003	-0.44472	-0.00026408	2.8001	0.0016627	2.3554	0.0013987	593.8091835062435	21.498	0.91965	21.569	21.156	22.075	0.071489					70	18	6	0	0	0	0.45795	1	641	641		62.107	1.1355	1	3784300	+		68538	31761	48092	48170	74438	74438					0.014926826835562679
RPQRPRDDF	9	Unmodified	_RPQRPRDDF_					0	0	0			REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	REV__ENST00000397068.7_2_11:3661554-3663324:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.808837890625	2	593.807428	1185.6003	-0.72804	-0.00043232	3.2153	0.0019093	2.4873	0.001477	593.8093228779526	22.771	3.0568	22.845	22.03	25.087	0.073954					178	67	3	0	0	0	0.45795	1	790	790		62.107	1.1355	1	2073100	+		68539	31761	48092	48170	74439	74439					0.014926826835562679
RPQRQFTCL	9	Unmodified	_RPQRQFTCL_					0	0	0			REV__nc|ENSG00000141956|P57071|PRDM15	REV__nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.8080444335938	2	574.8033	1147.59205	4.0221	0.0023119	4.4305	0.0025467	8.4526	0.0048586	574.8056713636646	18.052	0.8699	18.112	17.825	18.695	0.06036					30	18	2	0	0	0	0.96322	1	214	214		27.882	3.3631	1	69054	+		68540	36727	48093	48171	74440	74440					0.024154124425876944
RPQSCRAL	8	Unmodified	_RPQSCRAL_					0	0	0			REV__ENST00000502408.1_1_5:76326323-76330256:+|nuORF	REV__ENST00000502408.1_1_5:76326323-76330256:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	465.7509460449219	2	465.750536	929.486519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.682	1	29.682	29.182	30.182	0								0	0	0	0.40904	1	1841	1841		65.803	5.5092	1		+		68541	30225	48094	48172	74441	74441					0.01895496316956269
RPQSCRAL	8	Unmodified	_RPQSCRAL_					0	0	0			REV__ENST00000502408.1_1_5:76326323-76330256:+|nuORF	REV__ENST00000502408.1_1_5:76326323-76330256:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7527770996094	2	465.750536	929.486519	-0.43853	-0.00020425	-0.20584	-9.5868E-05	-0.64437	-0.00030012	465.75073531590664	29.58	1.695	29.583	28.713	30.408	0.0031357					95	41	5	0	0	0	0.46709	1	1838	1838		88.643	0	1	15425000	+		68542	30225	48094	48172	74442	74442					0.01895496316956269
RPQSESLL	8	Unmodified	_RPQSESLL_					0	0	0			REV__nc|ENSG00000138835|P49796-7|RGS3	REV__nc|ENSG00000138835|P49796-7|RGS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2562561035156	2	465.256174	928.497795	0.72687	0.00033818	-0.8808	-0.0004098	-0.15393	-7.1617E-05	465.25576941565913	59.241	0.8159	59.241	58.895	59.711	0					80	21	5	0	0	0	0.68535	1	6769	6769		68.485	7.5128	1	14942000	+		68543	36710	48095	48173	74443	74443					0.03068596892092046
RPQSGANGL	9	Unmodified	_RPQSGANGL_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2389221191406	2	450.238316	898.462078	-0.66064	-0.00029744	-0.22611	-0.0001018	-0.88674	-0.00039925	450.2382204597854	23.894	1.5802	23.847	23.528	25.108	-0.047146					84	35	4	0	0	0	0.062622	3	985	965;973;985		124.08	22.479	1	7469800			68544	7211	48096	48174	74444;74445;74446	74446					0.008785594351024884
RPQSGRVL	8	Unmodified	_RPQSGRVL_					0	0	0		ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.772216796875	2	456.772326	911.530098	0.064037	2.925E-05	-0.41682	-0.00019039	-0.35278	-0.00016114	456.7720683000104	22.502	0.37331	22.502	22.338	22.711	0					20	7	3	0	0	0	0.68164	3	799	788;799;813		68.787	13.078	1	841690			68545	3230	48097	48175	74447;74448;74449	74448					0.07079429085752054
RPQSGRVL	8	Unmodified	_RPQSGRVL_					0	0	0		ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.77215576171875	2	456.772326	911.530098	-0.16488	-7.5311E-05	-0.091876	-4.1966E-05	-0.25675	-0.00011728	456.7722477380936	22.6	0.37548	22.525	22.363	22.739	-0.075296					20	7	3	0	0	0	0.73796	1	794	794		64.207	5.4253	1	869320			68546	3230	48097	48175	74450	74450					0.07079429085752054
RPQSGRVL	8	Unmodified	_RPQSGRVL_					0	0	0		ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7721862792969	2	456.772326	911.530098	-0.71537	-0.00032676	-0.010132	-4.628E-06	-0.7255	-0.00033139	456.77239758897844	22.415	0.47687	22.489	22.268	22.745	0.073954					29	9	4	0	0	0	0.71063	1	743	743		66.429	7.6473	1	807850			68547	3230	48097	48175	74451	74451					0.07079429085752054
RPQSLPSLIT	10	Unmodified	_RPQSLPSLIT_					0	0	0			REV__sp|P12978|EBNA2_EBVB9Epstein-Barrnuclearantigen2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA2PE=1SV=1	REV__sp|P12978|EBNA2_EBVB9Epstein-Barrnuclearantigen2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA2PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.3250122070312	2	556.327131	1110.63971	-0.41712	-0.00023205	-2.3021	-0.0012807	-2.7192	-0.0015128	556.3257463691319	19.541	0.53164	19.422	19.2	19.731	-0.11872					25	10	3	0	0	0	1.0508	1	412	412		39.253	2.8061	1	174810	+		68548	37562	48098	48176	74452	74452					0.08881389914427018
RPQSSRPVL	9	Unmodified	_RPQSSRPVL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1;ENST00000483061.1_1_2:224765805-224810001:-|nuORF	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3036499023438	2	520.30399	1038.59343	-0.74318	-0.00038668	-0.28184	-0.00014664	-1.025	-0.00053332	520.3037582825109	26.262	1.0358	26.262	25.957	26.993	0					40	24	2	0	0	0	0.26413	1	1316	1316		80.455	24.95	1	2818800			68549	1790	48099	48177	74453	74453					0.07567369802995927
RPQSSRPVL	9	Unmodified	_RPQSSRPVL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1;ENST00000483061.1_1_2:224765805-224810001:-|nuORF	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3035888671875	2	520.30399	1038.59343	-0.61216	-0.00031851	-0.57987	-0.00030171	-1.192	-0.00062022	520.3035967282152	26.299	1.0926	26.276	25.998	27.091	-0.023088					45	26	2	0	0	0	0.18994	1	1316	1316		90.601	13.754	1	2928700			68550	1790	48099	48177	74454	74454					0.07567369802995927
RPQSSRPVL	9	Unmodified	_RPQSSRPVL_					0	0	0		ENSG00000085449|ENST00000233055|WDFY1;ENST00000483061.1_1_2:224765805-224810001:-|nuORF	ENSG00000085449|ENST00000233055|WDFY1	ENSG00000085449|ENST00000233055|WDFY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3033447265625	2	520.30399	1038.59343	-0.32043	-0.00016672	-0.99419	-0.00051728	-1.3146	-0.000684	520.3033855959725	26.134	1.0722	26.215	25.924	26.996	0.081293					42	25	2	0	0	0	0.22902	2	1248	1248;1259		85.161	24.189	1	2538900			68551	1790	48099	48177	74455;74456	74455					0.07567369802995927
RPQTAWWRVL	10	Unmodified	_RPQTAWWRVL_					0	0	0		ENST00000273814.7_1_4:953005-953860:-|nuORF	ENST00000273814.7_1_4:953005-953860:-|nuORF	ENST00000273814.7_1_4:953005-953860:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.2457275390625	3	438.247285	1311.72002	-0.059296	-2.5986E-05	-0.20355	-8.9207E-05	-0.26285	-0.00011519	438.2471453675113	28.131	2.6816	28.212	27.245	29.926	0.080811					178	67	3	0	0	0	1.1333	1	1567	1567		28.081	3.8497	1	1719600			68552	11672	48100	48178	74457	74457					0.07663296028113109
RPQTFSVL	8	Unmodified	_RPQTFSVL_					0	0	0		ENST00000475309.5_1_7:5257468-5257723:+|nuORF	ENST00000475309.5_1_7:5257468-5257723:+|nuORF	ENST00000475309.5_1_7:5257468-5257723:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.2704772949219	2	474.269084	946.523616	0.1606	7.6169E-05	3.8157	0.0018097	3.9763	0.0018858	474.27085511490003	24.945	1.3936	24.945	24.429	25.823	0					78	32	3	0	0	0	0.71833	1	1148	1148		65.803	2.4969	1	1645600			68553	15058	48101	48179	74458	74458					0.048214911343848144
RPQTFSVL	8	Unmodified	_RPQTFSVL_					0	0	0		ENST00000475309.5_1_7:5257468-5257723:+|nuORF	ENST00000475309.5_1_7:5257468-5257723:+|nuORF	ENST00000475309.5_1_7:5257468-5257723:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.270263671875	2	474.269084	946.523616	-0.47689	-0.00022617	4.4349	0.0021033	3.958	0.0018771	474.27115298151654	25.079	1.3072	25.045	24.546	25.853	-0.034397					78	30	3	0	0	0	0.71833	1	1149	1149		65.803	10.299	1	1684500			68554	15058	48101	48179	74459	74459					0.048214911343848144
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7867736816406	2	509.787641	1017.56073	-0.2631	-0.00013412	0.34323	0.00017498	0.080134	4.0852E-05	509.7874842518393	60.237	0.80634	60.237	59.813	60.619	0					47	21	4	0	0	0	0.30449	3	6905	6905;6915;6926		75.043	11.737	1	5652500			68555	912	48102	48180	74460;74461;74462	74460					0.05265162680132107
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7870788574219	2	509.787641	1017.56073	-0.56843	-0.00028978	0.32623	0.00016631	-0.24221	-0.00012347	509.78757053104425	60.465	0.7189	60.252	59.924	60.643	-0.2134					46	18	4	0	0	0	0.26413	2	6916	6916;6930		80.455	19.483	1	5425000			68556	912	48102	48180	74463;74464	74463					0.05265162680132107
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7869567871094	2	509.787641	1017.56073	-1.6617	-0.0008471	1.4314	0.00072972	-0.23025	-0.00011738	509.78813996348833	60.138	0.67382	60.217	59.9	60.573	0.078884					43	17	4	0	0	0	0.33603	2	6803	6803;6840		70.816	3.3972	1	5200200			68557	912	48102	48180	74465;74466	74465					0.05265162680132107
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.787641	1017.56073	-0.5282	-0.00026927	-6.47	-0.0032983	-6.9982	-0.0035676	509.7838047467432	60.399	0.54203	60.145	59.794	60.336	-0.25374	-0.067477	-0.0072698	NaN	80.455	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355710			68558	912	48102	48180							0.05265162680132107
RPQTPLTLS	9	Unmodified	_RPQTPLTLS_					0	0	0			REV__ENSG00000079557|ENST00000226355|AFM	REV__ENSG00000079557|ENST00000226355|AFM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.77154541015625	2	506.792924	1011.57129	-0.56375	-0.00028571	-0.77371	-0.00039211	-1.3375	-0.00067782	506.792479631559	20.602	0.52752	20.497	20.178	20.705	-0.10477					17	10	2	0	0	0	0.024344	1	539	539		45.972	0	1	84930	+		68559	20640	48103	48181	74467	74467					0.06597145334569632
RPQVAPITMF	10	Oxidation (M)	_RPQVAPITM(Oxidation (M))F_		RPQVAPITM(1)F		RPQVAPITM(59)F	0	0	1			REV__UBE4B|p.N942I|1|0.13|ENSG00000130939|chr1:10151460-10151460|A/T|missense_variant	REV__UBE4B|p.N942I|1|0.13|ENSG00000130939|chr1:10151460-10151460|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	588.3173217773438	2	588.315709	1174.61686	0.77521	0.00045607	1.2708	0.00074765	2.046	0.0012037	588.3167665933652	28.508	0.95608	28.588	28.289	29.245	0.080812					71	23	5	0	0	0	0.82838	1	1618	1618		58.782	14.405	1	3044400	+		68560	37752	48104	48182	74468	74468		990			0.03654047525287751
RPQVFPEMP	9	Unmodified	_RPQVFPEMP_					0	0	0		ENST00000550376.5_1_12:108154390-108154935:-|nuORF;ENST00000228437.9_1_12:108154390-108154785:-|nuORF;ENST00000547188.1_1_12:108154390-108154627:-|nuORF	ENST00000550376.5_1_12:108154390-108154935:-|nuORF	ENST00000550376.5_1_12:108154390-108154935:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	550.782958984375	2	550.781502	1099.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.025	1	27.106	26.606	27.606	0.081293								0	0	0	0.37385	1	1387	1387		63.306	2.3343	1				68561	11215	48105	48183	74469	74469					0.0026580294545510696
RPQVTLHAVVK	11	Unmodified	_RPQVTLHAVVK_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.3766479492188	2	624.382771	1246.75099	0.28032	0.00017503	-4.1957	-0.0026197	-3.9153	-0.0024447	624.3801305600199	105.33	0.40593	105.21	105.03	105.44	-0.12444					24	9	3	0	0	0	1.0392	1	13139	13139		28.081	8.0847	1	623680	+		68562	23118	48106	48184	74470	74470					0.13748449342347158
RPQYPYIV	8	Unmodified	_RPQYPYIV_					0	0	0			REV__ENSG00000129038|ENST00000261921|LOXL1	REV__ENSG00000129038|ENST00000261921|LOXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7686157226562	2	518.284734	1034.55492	-0.15599	-8.0846E-05	-3.3086	-0.0017148	-3.4646	-0.0017956	518.7846955562965	39.478	0.1711	39.478	39.391	39.562	0					5	4	2	0	0	0	0.027866	1	3382	3382		14.664	0	1	50136	+		68563	23028	48107	48185	74471	74471					0.03902064168460129
RPRAALPGA	9	Unmodified	_RPRAALPGA_					0	0	0			REV__nc|ENSG00000112425|B3EWF7|EPM2A	REV__nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.78912353515625	2	454.774868	907.535184	-0.57476	-0.00026139	1.3643	0.00062045	0.78954	0.00035906	454.7754062183948	25.587	1.3009	25.553	24.771	26.072	-0.034395					54	30	4	0	0	0	0.024381	1	1246	1246		21.96	0	1	676160	+		68564	36573	48108	48186	74472	74472					0.07771732948356203
RPRAATVV	8	Unmodified	_RPRAATVV_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.269287109375	2	435.269419	868.524284	-0.11165	-4.8598E-05	-0.4577	-0.00019922	-0.56935	-0.00024782	435.2692433486347	23.338	1.8956	23.338	22.757	24.653	0					100	43	4	0	0	0	0.99042	1	936	936		38.806	6.8513	1	10827000			68565	2948;9701	48109	48187	74473	74473					0.08476330574092117
RPRAATVV	8	Unmodified	_RPRAATVV_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2693786621094	2	435.269419	868.524284	-0.37531	-0.00016336	-0.20705	-9.0124E-05	-0.58236	-0.00025348	435.26935969048617	23.308	1.8104	23.247	22.709	24.519	-0.060862					93	41	4	0	0	0	0.99042	2	880	880;914		38.806	1.647	1	10850000			68566	2948;9701	48109	48187	74474;74475	74474					0.08476330574092117
RPRAEYSSH	9	Unmodified	_RPRAEYSSH_					0	0	0			REV__ENST00000354752.5_1_9:99922575-99942308:-|nuORF	REV__ENST00000354752.5_1_9:99922575-99942308:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8090209960938	2	551.773054	1101.53155	-0.065714	-3.6259E-05	-2.683	-0.0014804	-2.7487	-0.0015167	551.7713742450117	55.845	0.46922	55.629	55.303	55.772	-0.21607					20	12	2	0	0	0	0.024381	1	6016	6016		45.952	28.587	1	267840	+		68567	30759	48110	48188	74476	74476					-0.015149816161510898
RPRAPDAKL	9	Unmodified	_RPRAPDAKL_					0	0	0			REV__ENST00000359774.8_1_2:160139588-160143137:-|nuORF	REV__ENST00000359774.8_1_2:160139588-160143137:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.293212890625	2	512.306532	1022.59851	0.75106	0.00038477	-1.8935	-0.00097006	-1.1425	-0.00058529	512.3053629378204	20.507	0.3441	20.576	20.366	20.71	0.068901					12	6	3	0	0	0	0.024495	1	506	506		34.173	0	1	21691	+		68568	30888	48111	48189	74477	74477					0.08811673665604758
RPRAPETSL	9	Unmodified	_RPRAPETSL_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.78759765625	2	513.788173	1025.56179	-0.37554	-0.00019295	0.05506	2.8289E-05	-0.32048	-0.00016466	513.7880598372328	23.983	1.3869	24.059	23.434	24.821	0.076239					62	30	4	0	0	0	0.50848	1	966	966		58.782	0	1	1921200			68569	1804	48112	48190	74478	74478					0.05003377049047231
RPRAPQGP	8	Unmodified	_RPRAPQGP_					0	0	0		ENST00000519685.5_1_8:22875745-22875853:+|nuORF;ENST00000558619.5_1_15:91073804-91136884:+|nuORF	ENST00000519685.5_1_8:22875745-22875853:+|nuORF	ENST00000519685.5_1_8:22875745-22875853:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.7516174316406	2	439.751393	877.488233	-0.2508	-0.00011029	0.41794	0.00018379	0.16714	7.35E-05	439.7514749391868	20.879	1.4931	20.774	20.129	21.622	-0.10477					76	30	4	0	0	0	0.71833	1	569	569		65.803	2.4969	1	1138500			68570	15960	48113	48191	74479	74479					0.04458873397231855
RPRAPQPG	8	Unmodified	_RPRAPQPG_					0	0	0			REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.7514953613281	2	439.751393	877.488233	-0.89424	-0.00039324	1.0639	0.00046787	0.16971	7.4629E-05	439.7517454314836	20.683	1.6541	20.683	19.929	21.584	0					80	33	4	0	0	0	0.59392	5	596	548;560;570;582;596		76.847	0	1	910440	+		68571	34222	48114	48192	74480;74481;74482;74483;74484	74484					0.04458873397231855
RPRAPQPG	8	Unmodified	_RPRAPQPG_					0	0	0			REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.7515869140625	2	439.751393	877.488233	-0.2508	-0.00011029	0.41794	0.00018379	0.16714	7.35E-05	439.7514749391868	20.879	1.4931	20.774	20.129	21.622	-0.10477					76	30	4	0	0	0	0.71833	3	590	579;590;603		65.803	0	1	1138500	+		68572	34222	48114	48192	74485;74486;74487	74486					0.04458873397231855
RPRAPQPG	8	Unmodified	_RPRAPQPG_					0	0	0			REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	439.751393	877.488233	-0.89424	-0.00039324	1.0639	0.00046787	0.16971	7.4629E-05	439.7517454314836	20.683	1.6541	20.683	19.929	21.584	0	-0.060023	0.00048767	NaN	76.847	80	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910440	+		68573	34222	48114	48192							0.04458873397231855
RPRARPTPG	9	Unmodified	_RPRARPTPG_					0	0	0			REV__nc|ENSG00000164889|P04920-2|SLC4A2	REV__nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2965393066406	2	504.296499	1006.57845	-0.057145	-2.8818E-05	-0.84698	-0.00042713	-0.90412	-0.00045595	504.2961960132727	18.802	2.191	18.67	18.352	20.543	-0.13148					113	44	4	0	0	0	0.31037	2	343	307;343		74.255	3.3386	1	6611200	+		68574	25813	48115	48193	74488;74489	74489					0.07541922725658878
RPRARPTPG	9	Unmodified	_RPRARPTPG_					0	0	0			REV__nc|ENSG00000164889|P04920-2|SLC4A2	REV__nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.2967834472656	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	0.31037	1	335	335		74.255	10.949	1	5749100	+		68575	25813	48115	48193	74490	74490					0.07541922725658878
RPRAYEAD	8	Unmodified	_RPRAYEAD_					0	0	0			REV__ENST00000274031.7_1_4:140477471-140477915:-|nuORF	REV__ENST00000274031.7_1_4:140477471-140477915:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2497253417969	2	489.243598	976.472643	-0.30965	-0.00015149	3.8211	0.0018694	3.5114	0.0017179	489.24519618299723	33.545	0.34666	33.345	33.209	33.555	-0.20019					10	8	2	0	0	0	0.027866	1	2392	2392		47.916	0	1	60429	+		68576	29826	48116	48194	74491	74491					-0.016534579104927616
RPRCRPINATL	11	Unmodified	_RPRCRPINATL_					0	0	0		CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant;ENSG00000267631|ENST00000301407|CGB1;ENSG00000104818|ENST00000359342|CGB2;ENSG00000213030|ENST00000448456|CGB8;ENSG00000196337|ENST00000684222|CGB7;ENSG00000189052|ENST00000301408|CGB5;ENSG00000104827|ENST00000357383|CGB3;nc|ENSG00000213030|P0DN86-2|CGB3;nc|ENSG00000267631|A6NKQ9|CGB1	CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant	CGB7|p.V64Cfs*33|1|0.4|ENSG00000196337|chr19:49054599-49054599|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.2491149902344	3	432.915429	1295.72446	-0.4273	-0.00018498	-0.45922	-0.0001988	-0.88651	-0.00038379	432.91552546228326	32.656	1.4571	32.656	32.03	33.487	0					129	38	6	0	0	0	0.024723	1	2265	2265		22.562	0	1	7053900			68577	261	48117	48195	74492	74492					0.08842437179373519
RPRCVGAR	8	Unmodified	_RPRCVGAR_					0	0	0			REV__ENST00000494748.1_1_1:1152894-1154464:-|nuORF	REV__ENST00000494748.1_1_1:1152894-1154464:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2825012207031	2	457.758695	913.502838	-0.28027	-0.00012829	-2.2515	-0.0010306	-2.5317	-0.0011589	457.75647299574365	35.126	1.3343	35.126	34.552	35.886	0					78	34	4	0	0	0	0.027866	1	2611	2611		25.45	0	1	1611100	+		68578	33382	48118	48196	74493	74493					0.04262622273722627
RPRDRRPH	8	Unmodified	_RPRDRRPH_					0	0	0		ENST00000565468.5_1_7:140774442-140912397:+|nuORF	ENST00000565468.5_1_7:140774442-140912397:+|nuORF	ENST00000565468.5_1_7:140774442-140912397:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3120727539062	2	545.310472	1088.60639	-0.98501	-0.00053714	3.3762	0.0018411	2.3911	0.0013039	545.3121570120651	22.385	0.79719	22.31	21.987	22.784	-0.075296					47	16	4	0	0	0	0.71063	1	785	785		66.429	14.13	1	453150			68579	16920	48119	48197	74494	74494					0.06563245705751797
RPREISVLRM	10	Oxidation (M)	_RPREISVLRM(Oxidation (M))_		RPREISVLRM(1)		RPREISVLRM(58)	0	0	1		ENST00000391858.8_1_1:231473718-231473790:+|nuORF	ENST00000391858.8_1_1:231473718-231473790:+|nuORF	ENST00000391858.8_1_1:231473718-231473790:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.9110107421875	3	424.911685	1271.71322	-0.67753	-0.00028789	2.7988	0.0011892	2.1213	0.00090135	424.91269257901234	39.098	1.2978	39.098	38.473	39.771	0					99	35	5	0	0	0	0.83648	1	3302	3302		58.246	20.646	1	12888000			68580	13398	48120	48198	74495	74495		490			0.08823615085225356
RPREPLWA	8	Unmodified	_RPREPLWA_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.293212890625	2	512.787976	1023.5614	0.44546	0.00022843	2.2714	0.0011647	2.7168	0.0013932	512.7890947917437	20.666	0.54075	20.734	20.514	21.054	0.068901					18	10	2	0	0	0	0.027866	1	506	506		50.025	12.865	1	135350			68581	2669	48121	48199	74496	74496					0.05056002119840741
RPRFRSIL	8	Unmodified	_RPRFRSIL_					0	0	0			REV__nc|ENSG00000265992|Q1W209|ESRG	REV__nc|ENSG00000265992|Q1W209|ESRG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2637329101562	2	522.824892	1043.63523	-0.74088	-0.00038735	-1.252	-0.00065459	-1.9929	-0.0010419	522.8241105969286	54.392	0.65879	54.256	53.959	54.618	-0.13617					43	18	3	0	0	0	0.027866	1	5768	5768		60.972	0	1	1546300	+		68582	37191	48122	48200	74497	74497					0.11515970282175658
RPRFSGAF	8	Unmodified	_RPRFSGAF_					0	0	0			REV__ENST00000573487.5_1_16:21169819-21172478:+|nuORF	REV__ENST00000573487.5_1_16:21169819-21172478:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.25311279296875	2	469.253769	936.492984	0.5461	0.00025626	-1.6977	-0.00079663	-1.1516	-0.00054037	469.25282847973085	76.86	0.73834	76.86	76.556	77.295	0					30	17	2	0	0	0	1.0239	1	9492	9492		33.516	3.0119	1	1038200	+		68583	35435	48123	48201	74498	74498					0.022197575400014102
RPRGEQGY	8	Unmodified	_RPRGEQGY_					0	0	0			REV__nc|ENSG00000144152|Q53RD9-3|FBLN7	REV__nc|ENSG00000144152|Q53RD9-3|FBLN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7587585449219	2	481.743765	961.472977	-0.24779	-0.00011937	1.6489	0.00079435	1.4011	0.00067498	481.74422788762325	22.025	0.42871	22.025	21.723	22.152	0					12	8	2	0	0	0	0.027866	1	715	715		42.396	11.892	1	17834	+		68584	24314	48124	48202	74499	74499					-0.009300381906314215
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.82916259765625	2	497.829643	993.644734	0.23114	0.00011507	-0.62068	-0.00030899	-0.38954	-0.00019392	497.829289554105	51.961	1.8039	51.961	51.6	53.404	0					115	48	5	0	0	0	0.67308	1	5561	5561		47.916	3.3845	1	8124800			68585	15509	48125	48203	74500	74500					0.14765738567689368
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.829345703125	2	497.829643	993.644734	-0.25679	-0.00012784	-0.10211	-5.0832E-05	-0.3589	-0.00017867	497.8295386807793	52.078	1.6653	51.93	51.609	53.275	-0.14735					95	44	4	0	0	0	0.22754	2	5547	5547;5560		85.359	22.381	1	8062400			68586	15509	48125	48203	74501;74502	74501					0.14765738567689368
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:142991698-142998016:+|nuORF	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.8291320800781	2	497.829643	993.644734	-0.75614	-0.00037643	0.33926	0.0001689	-0.41687	-0.00020753	497.8297505849709	51.819	1.542	51.906	51.61	53.152	0.087006					101	40	4	0	0	0	0.22754	1	5471	5471		85.359	22.381	1	7223100			68587	15509	48125	48203	74503	74503					0.14765738567689368
RPRGPLAQL	9	Unmodified	_RPRGPLAQL_					0	0	0			REV__ENST00000528698.5_1_11:407426-409994:-|nuORF	REV__ENST00000528698.5_1_11:407426-409994:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2969055175781	2	504.309075	1006.6036	2.1066	0.0010624	3.7236	0.0018778	5.8302	0.0029402	504.3113298610985	18.553	0.39138	18.553	18.382	18.774	0					10	7	2	0	0	0	0.024205	1	287	287		73.975	36.816	1	40583	+		68588	34501	48126	48204	74504	74504					0.10055977528224957
RPRGPPPPP	9	Unmodified	_RPRGPPPPP_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2;ENST00000525207.1_1_11:65824747-65825957:+|nuORF	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7821960449219	2	485.782693	969.550834	-0.6565	-0.00031892	-2.2619	-0.0010988	-2.9184	-0.0014177	485.7813482228107	25.848	0.79434	25.848	25.779	26.573	0					41	18	3	0	0	0	0.60698	1	1281	1281		52.299	0	1	1456200			68589	1848	48127	48205	74505	74505					0.06484019465415258
RPRGPRRKVF	10	Unmodified	_RPRGPRRKVF_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.892822265625	2	634.894172	1267.77379	-0.88559	-0.00056226	-1.8396	-0.0011679	-2.7252	-0.0017302	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.1267	1	12985	12985		29.15	6.5699	1	1402800	+		68590	22280	48128	48206	74506	74506					0.15061513250498137
RPRGQCSKPAS	11	Unmodified	_RPRGQCSKPAS_					0	0	0			REV__ENST00000466692.1_1_4:1575879-1576248:-|nuORF	REV__ENST00000466692.1_1_4:1575879-1576248:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.8087768554688	2	593.809113	1185.60367	-1.733	-0.0010291	1.441	0.00085566	-0.292	-0.00017339	593.8099846240251	22.638	3.3203	22.638	21.965	25.285	0					206	75	4	0	0	0	0.97926	1	751	751		41.427	2.1738	1	2217700	+		68591	33047	48129	48207	74507	74507					0.01829609465903559
RPRGQHGGLS	10	Unmodified	_RPRGQHGGLS_					0	0	0			REV__ENST00000264563.6_1_19:55877420-55879680:-|nuORF	REV__ENST00000264563.6_1_19:55877420-55879680:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.842529296875	2	532.789038	1063.56352	-0.9387	-0.00050013	-3.6047	-0.0019205	-4.5434	-0.0024207	532.784842956233	51.694	1.16	51.546	50.935	52.095	-0.14735					105	32	5	0	0	0	0.03519	1	5421	5421		39.253	7.298	1	1742700	+		68592	29721	48130	48208	74508	74508					0.03428430857661624
RPRGRCVP	8	Unmodified	_RPRGRCVP_					0	0	0		ENST00000434573.1_1_11:67957574-67980138:-|nuORF	ENST00000434573.1_1_11:67957574-67980138:-|nuORF	ENST00000434573.1_1_11:67957574-67980138:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7879333496094	2	470.76652	939.518488	-0.046187	-2.1743E-05	1.1768	0.00055399	1.1306	0.00053225	470.76670493659526	23.8	0.21427	23.8	23.607	23.822	0					6	4	2	0	0	0	0.027866	1	971	971		13.775	0	1	67693			68593	14247	48131	48209	74509	74509					0.04630908790761623
RPRGRDLRDR	10	Unmodified	_RPRGRDLRDR_					0	0	0			REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.9154357910156	3	432.916709	1295.7283	-0.4273	-0.00018498	-3.4158	-0.0014787	-3.8431	-0.0016637	432.91552546228326	32.656	1.4571	32.656	32.03	33.487	0					129	38	6	0	0	0	1.0074	2	2287	2275;2287		45.022	8.7046	1	7053900	+		68594	36063	48132	48210	74510;74511	74511					0.09226242997442569
RPRGRDLRDR	10	Unmodified	_RPRGRDLRDR_					0	0	0			REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.91522216796875	3	432.916709	1295.7283	-0.41842	-0.00018114	-3.5088	-0.001519	-3.9272	-0.0017002	432.9154714908963	32.501	1.431	32.513	31.863	33.294	0.011795					122	37	5	0	0	0	1.1081	1	2231	2231		31.634	0.56612	1	6600900	+		68595	36063	48132	48210	74512	74512					0.09226242997442569
RPRGRDLRDR	10	Unmodified	_RPRGRDLRDR_					0	0	0			REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.9154968261719	3	432.916709	1295.7283	0.22014	9.5302E-05	-4.0688	-0.0017614	-3.8486	-0.0016661	432.9152180112777	32.377	1.8554	32.44	31.961	33.817	0.062889					134	48	6	0	0	0	1.1314	1	2191	2191		27.047	2.8155	1	4754900	+		68596	36063	48132	48210	74513	74513					0.09226242997442569
RPRGRPIGA	9	Unmodified	_RPRGRPIGA_					0	0	0			REV__ENST00000536374.1_1_9:80851152-80851524:+|nuORF	REV__ENST00000536374.1_1_9:80851152-80851524:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.7561950683594	2	490.299042	978.583531	0.24068	0.000118	-0.28459	-0.00013953	-0.043914	-2.1531E-05	490.29881394378987	19.79	1.0076	19.79	19.168	20.176	0					41	20	3	0	0	0	0.024506	1	446	446		30.504	5.0535	1	92519	+		68597	33312	48133	48211	74514	74514					0.09338226588272391
RPRHGLHV	8	Unmodified	_RPRHGLHV_					0	0	0			REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.78009033203125	2	486.285934	970.557316	-0.59362	-0.00028867	-3.7726	-0.0018346	-4.3662	-0.0021232	486.28408862468007	25.915	0.707	25.891	25.82	26.527	-0.023088					20	16	2	0	0	0	0.027866	1	1264	1264		52.299	36.657	1	501790	+		68598	32575	48134	48212	74515	74515					0.07085957416802557
RPRHKSLN	8	Unmodified	_RPRHKSLN_					0	0	0		nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.29644775390625	2	504.296499	1006.57845	2.0822	0.00105	-3.0847	-0.0015556	-1.0025	-0.00050553	504.29506486810294	18.553	1.7931	18.553	18.186	19.979	0					92	36	4	0	0	0	0.59392	1	299	299		76.847	0.072494	1	7252400			68599	5923	48135	48213	74516	74516					0.07541922725658878
RPRHKSLN	8	Unmodified	_RPRHKSLN_					0	0	0		nc|ENSG00000146966|Q9ULE3-2|DENND2A;ENSG00000146966|ENST00000496613|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	nc|ENSG00000146966|Q9ULE3-2|DENND2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.29736328125	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	0.89627	1	276	276		51.335	6.8044	1	5749100			68600	5923	48135	48213	74517	74517					0.07541922725658878
RPRHQGVMV	9	Oxidation (M)	_RPRHQGVM(Oxidation (M))V_		RPRHQGVM(1)V		RPRHQGVM(56)V	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ACTC1|p.V37M|1|0.3|ENSG00000159251|chr15:34794700-34794700|C/T|missense_variant;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.29541015625	2	548.295642	1094.57673	-0.17387	-9.5334E-05	-0.75008	-0.00041127	-0.92396	-0.0005066	548.2954263427797	19.621	2.2207	19.621	19.317	21.537	0					119	45	5	0	0	0	0.55828	1	431	431		55.504	17.693	1	7603900			68601	1564;14709	48136	48214	74518	74518		53			0.03322545645391983
RPRHQGVMV	9	Oxidation (M)	_RPRHQGVM(Oxidation (M))V_		RPRHQGVM(1)V		RPRHQGVM(56)V	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ACTC1|p.V37M|1|0.3|ENSG00000159251|chr15:34794700-34794700|C/T|missense_variant;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.2954711914062	2	548.295642	1094.57673	-0.80449	-0.0004411	0.05748	3.1516E-05	-0.74701	-0.00040958	548.2957619915276	19.826	2.2552	19.707	19.446	21.701	-0.11872					130	46	5	0	0	0	0.55828	1	446	446		55.504	14.726	1	5925800			68602	1564;14709	48136	48214	74519	74519		53			0.03322545645391983
RPRHQGVMV	9	Unmodified	_RPRHQGVMV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ACTC1|p.V37M|1|0.3|ENSG00000159251|chr15:34794700-34794700|C/T|missense_variant;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2981567382812	2	540.298185	1078.58182	-1.0759	-0.00058129	0.70537	0.00038111	-0.37051	-0.00020018	540.298537960825	21.799	1.3564	21.799	21.537	22.894	0					71	28	4	0	0	0	0.67308	1	713	713		47.916	7.1374	1	1943800			68603	1564;14709	48136	48215	74520	74520					0.04566849508000814
RPRHQGVMV	9	Unmodified	_RPRHQGVMV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ACTC1|p.V37M|1|0.3|ENSG00000159251|chr15:34794700-34794700|C/T|missense_variant;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000462494.5_1_7:5568599-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2981567382812	2	540.298185	1078.58182	-0.91829	-0.00049615	0.60861	0.00032883	-0.30968	-0.00016732	540.2984314910951	21.847	1.2273	21.758	21.453	22.68	-0.089186					73	25	5	0	0	0	0.70186	2	731	716;731		45.952	12.436	1	1632900			68604	1564;14709	48136	48215	74521;74522	74522					0.04566849508000814
RPRHSVASL	9	Unmodified	_RPRHSVASL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.7954406738281	2	511.796332	1021.57811	-1.1795	-0.00060366	0.98731	0.0005053	-0.19219	-9.8363E-05	511.7966452200949	21.832	0.87061	21.904	21.637	22.508	0.071487					46	17	3	0	0	0	0.6504	1	672	672		49.442	12.282	1	557830			68605	1512	48137	48216	74523	74523					0.06818503005797538
RPRHTAPN	8	Unmodified	_RPRHTAPN_					0	0	0			REV__ENST00000319555.7_1_16:88601430-88601547:+|nuORF	REV__ENST00000319555.7_1_16:88601430-88601547:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.7729187011719	2	474.759749	947.504946	0.4494	0.00021336	-1.4386	-0.00068299	-0.9892	-0.00046963	474.7585550263435	23.364	0.88903	23.364	22.848	23.737	0					25	20	2	0	0	0	0.027866	1	914	914		51.335	28.293	1	159790	+		68606	30326	48138	48217	74524	74524					0.02909374283183297
RPRHTAPN	8	Unmodified	_RPRHTAPN_					0	0	0			REV__ENST00000319555.7_1_16:88601430-88601547:+|nuORF	REV__ENST00000319555.7_1_16:88601430-88601547:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7727966308594	2	474.759749	947.504946	-0.13597	-6.4552E-05	0.4653	0.00022091	0.32933	0.00015635	474.7598935248297	23.255	0.75177	23.331	23.114	23.866	0.076241					25	17	2	0	0	0	0.027866	1	858	858		35.618	14.671	1	136770	+		68607	30326	48138	48217	74525	74525					0.02909374283183297
RPRIPKTN	8	Unmodified	_RPRIPKTN_					0	0	0			REV__nc|ENSG00000155380|P53985-2|SLC16A1	REV__nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2718811035156	2	491.30125	980.587947	-0.19084	-9.376E-05	-0.59933	-0.00029445	-0.79017	-0.00038821	491.3008281458737	33.667	0.73882	33.724	33.315	34.054	0.056572					43	18	3	0	0	0	0.027866	1	2406	2406		27.882	4.8398	1	557740	+		68608	25004	48139	48218	74526	74526					0.09687691011174593
RPRITFMHE	9	Unmodified	_RPRITFMHE_					0	0	0		ENST00000287878.8_2_7:151573972-151574197:-|nuORF	ENST00000287878.8_2_7:151573972-151574197:-|nuORF	ENST00000287878.8_2_7:151573972-151574197:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	593.8089599609375	2	593.811125	1185.6077	-0.72804	-0.00043232	-3.0102	-0.0017875	-3.7383	-0.0022198	593.8093228779526	22.771	3.0568	22.845	22.03	25.087	0.073954					178	67	3	0	0	0	0.75397	1	803	803		42.396	3.1433	1	2073100			68609	11769	48140	48219	74527	74527					0.02231698959599271
RPRKAFLL	8	Unmodified	_RPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.82415771484375	2	500.824361	999.634169	-0.34832	-0.00017445	-0.44103	-0.00022088	-0.78935	-0.00039532	500.8240276331338	33.584	1.4557	33.584	33.251	34.706	0					109	37	4	0	0	0	0.78609	2	2433	2433;2445		60.294	10.269	1	2682000			68610	6481	48141	48220	74528;74529	74528					0.1343375591327458
RPRKAFLL	8	Unmodified	_RPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.8242492675781	2	500.824361	999.634169	0.025261	1.2651E-05	-0.38733	-0.00019398	-0.36207	-0.00018133	500.82403150611617	33.519	2.3717	33.575	33.176	35.547	0.056568					131	61	4	0	0	0	0.96719	1	2388	2388		42.474	11.971	1	1697700			68611	6481	48141	48220	74530	74530					0.1343375591327458
RPRKDLVETLL	11	Unmodified	_RPRKDLVETLL_					0	0	0		ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.2738952636719	3	447.273388	1338.79833	0.2875	0.00012859	-1.2256	-0.0005482	-0.93814	-0.00041961	447.27275580646767	106.14	0.71733	106.14	105.89	106.6	-0.0013123					70	22	4	0	0	0	1.0563	1	13588	13588		23.378	3.3474	1	1980000			68612	869	48142	48221	74531	74531					0.14248683822711428
RPRKGSKTRQ	10	Unmodified	_RPRKGSKTRQ_					0	0	0		nc|ENSG00000107831|P55075-2|FGF8;nc|ENSG00000107831|P55075-3|FGF8;nc|ENSG00000107831|P55075|FGF8;ENSG00000107831|ENST00000320185|FGF8	nc|ENSG00000107831|P55075-2|FGF8	nc|ENSG00000107831|P55075-2|FGF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.88763427734375	3	405.246055	1212.71634	0.19315	7.8275E-05	3.3224	0.0013464	3.5156	0.0014247	405.2473640395262	22.296	0.97318	22.111	21.811	22.784	-0.18539					51	20	3	0	0	0	0.03519	1	838	838		39.873	15.641	1	76358			68613	2862	48143	48222	74532	74532					0.11848626254254668
RPRKIKEI	8	Unmodified	_RPRKIKEI_					0	0	0			REV__ENSG00000131467|ENST00000590720|PSME3	REV__ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.33984375	2	520.340375	1038.6662	-0.85582	-0.00044532	0.41179	0.00021427	-0.44403	-0.00023104	520.3404255871862	23.102	0.75929	23.102	22.848	23.607	0					42	17	3	0	0	0	1.0009	1	883	883		37.159	2.9866	1	946820	+		68614	23212	48144	48223	74533	74533					0.14841123596420402
RPRKKKLS	8	Unmodified	_RPRKKKLS_					0	0	0		ENST00000561607.5_1_15:31196204-31196745:+|nuORF	ENST00000561607.5_1_15:31196204-31196745:+|nuORF	ENST00000561607.5_1_15:31196204-31196745:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.27728271484375	2	506.840542	1011.66653	-0.38385	-0.00019455	0.7308	0.0003704	0.34694	0.00017584	506.84056420072295	54.76	0.22887	54.614	54.533	54.761	-0.14609					7	5	2	0	0	0	0.027866	1	5858	5858		10.265	0	1	59185			68615	16830	48145	48224	74534	74534					0.16116543316275056
RPRKLPRQ	8	Unmodified	_RPRKLPRQ_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2213134765625	2	525.835791	1049.65703	-1.1767	-0.00061874	2.6861	0.0014124	1.5094	0.00079369	525.8370568861425	28.427	0.32034	28.182	27.961	28.281	-0.24524					10	7	2	0	0	0	0.027866	1	1634	1634		17.365	0	1	54648	+		68616	24371	48146	48225	74535	74535					0.13418775030731922
RPRKRHCA	8	Unmodified	_RPRKRHCA_					0	0	0		RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15;RBM15|p.S670F|1|0.45|ENSG00000162775|chr1:110341414-110341414|C/T|missense_variant	RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7913208007812	2	512.290694	1022.56683	4.6509	0.0023826	1.8357	0.00094042	6.4866	0.003323	512.2916951513353	17.664	0.94	17.724	17.509	18.449	0.06036					29	22	2	0	0	0	1.0574	1	154	154		14.664	1.7049	1	12438			68617	6990	48147	48226	74536	74536					0.05645402430661761
RPRKVPSH	8	Unmodified	_RPRKVPSH_					0	0	0			REV__nc|ENSG00000065057|P78549-3|NTHL1	REV__nc|ENSG00000065057|P78549-3|NTHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2300720214844	2	488.793592	975.572632	-0.30119	-0.00014722	-1.5533	-0.00075922	-1.8545	-0.00090644	488.7927884723258	31.514	0.32289	31.525	31.34	31.663	0.011797					11	7	2	0	0	0	0.027866	1	2078	2078		33.516	11.556	1	68917	+		68618	20299	48148	48227	74537	74537					0.0838682421399426
RPRLLGSA	8	Unmodified	_RPRLLGSA_					0	0	0		ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.269287109375	2	435.269419	868.524284	-0.11165	-4.8598E-05	-0.4577	-0.00019922	-0.56935	-0.00024782	435.2692433486347	23.338	1.8956	23.338	22.757	24.653	0					100	43	4	0	0	0	1.0106	3	901	901;912;923		35.618	0	1	10827000			68619	16052	48149	48228	74538;74539;74540	74538					0.08476330574092117
RPRLLGSA	8	Unmodified	_RPRLLGSA_					0	0	0		ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2691955566406	2	435.269419	868.524284	-0.37531	-0.00016336	-0.20705	-9.0124E-05	-0.58236	-0.00025348	435.26935969048617	23.308	1.8104	23.247	22.709	24.519	-0.060862					93	41	4	0	0	0	1.0106	2	891	891;901		35.618	0	1	10850000			68620	16052	48149	48228	74541;74542	74541					0.08476330574092117
RPRLLGSA	8	Unmodified	_RPRLLGSA_					0	0	0		ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2693786621094	2	435.269419	868.524284	-0.094046	-4.0935E-05	-0.48652	-0.00021177	-0.58056	-0.0002527	435.2692346075311	23.255	1.6602	23.331	22.702	24.362	0.076241					91	37	4	0	0	0	1.0009	2	834	834;857		37.159	5.1146	1	11197000			68621	16052	48149	48228	74543;74544	74543					0.08476330574092117
RPRLLKPK	8	Unmodified	_RPRLLKPK_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2964172363281	2	504.345461	1006.67637	-0.036426	-1.8371E-05	-1.6632	-0.00083885	-1.6997	-0.00085722	504.34407957340744	18.784	0.34149	18.653	18.499	18.841	-0.13147					9	6	2	0	0	0	0.027866	1	331	331		42.474	0	1	21412	+		68622	21072	48150	48229	74545	74545					0.17329731321649433
RPRLPATGT	9	Unmodified	_RPRLPATGT_					0	0	0		ENSG00000179094|ENST00000317276|PER1;nc|ENSG00000179094|O15534-4|PER1	ENSG00000179094|ENST00000317276|PER1	ENSG00000179094|ENST00000317276|PER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.78509521484375	2	484.785433	967.556313	-0.086738	-4.2049E-05	0.056265	2.7277E-05	-0.030472	-1.4773E-05	484.7852019998783	24.645	0.72957	24.723	24.23	24.959	0.078344					24	15	2	0	0	0	0.62163	1	1050	1050		51.335	8.9393	1	653120			68623	8869	48151	48230	74546	74546					0.07123698257237265
RPRLPLPM	8	Unmodified	_RPRLPLPM_					0	0	0			REV__ENST00000556152.1_1_14:24033689-24033869:-|nuORF	REV__ENST00000556152.1_1_14:24033689-24033869:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.75592041015625	2	490.297122	978.579691	-0.31118	-0.00015257	4.1501	0.0020348	3.8389	0.0018822	490.29901977921867	20.012	0.96433	19.907	19.263	20.227	-0.10477					36	19	2	0	0	0	0.027866	1	479	479		35.201	13.241	1	77439	+		68624	35027	48152	48231	74547	74547					0.08954420770191973
RPRLPTPF	8	Unmodified	_RPRLPTPF_					0	0	0		ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000268097.9_1_15:72668459-72668681:-|nuORF	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.29132080078125	2	492.292894	982.571235	-0.038117	-1.8765E-05	-4.4719	-0.0022015	-4.51	-0.0022202	492.2906650438537	26.875	0.54215	26.875	26.531	27.073	0					21	12	2	0	0	0	0.6536	1	1413	1413		71.296	2.5089	1	983160			68625	17006	48153	48232	74548	74548					0.07925190125217796
RPRLPTPF	8	Unmodified	_RPRLPTPF_					0	0	0		ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000268097.9_1_15:72668459-72668681:-|nuORF	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.292894	982.571235	-0.84178	-0.0004144	-3.6782	-0.0018108	-4.52	-0.0022252	492.29102039158147	26.698	0.70874	26.78	26.499	27.208	0.081293	-0.049773	0.00050831	NaN	71.296	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1012900			68626	17006	48153	48232							0.07925190125217796
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.23870849609375	3	405.238566	1212.69387	0.78009	0.00031612	-0.60426	-0.00024487	0.17583	7.1252E-05	405.2384038753428	27.184	1.0993	27.184	26.825	27.924	0					93	28	5	0	0	0	0.811	1	1452	1452		59.931	1.6845	1	16163000			68627	9907	48154	48233	74549	74549					0.09602982065962351
RPRPAGGE	8	Unmodified	_RPRPAGGE_					0	0	0			REV__ENST00000539923.5_1_12:8850327-8866407:+|nuORF	REV__ENST00000539923.5_1_12:8850327-8866407:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.2279052734375	2	420.227751	838.440949	0.39277	0.00016505	-2.0811	-0.00087454	-1.6883	-0.00070949	420.2268190173431	25.563	0.95549	25.643	25.134	26.09	0.08009					38	22	2	0	0	0	0.97924	1	1177	1177		40.573	0	1	979960	+		68628	34678	48155	48234	74550	74550					0.015265941262327942
RPRPALKAE	9	Unmodified	_RPRPALKAE_					0	0	0			REV__ENST00000358739.4_1_6:27775991-27776072:+|nuORF	REV__ENST00000358739.4_1_6:27775991-27776072:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7703857421875	2	519.314358	1036.61416	-1.3519	-0.00070207	-0.97993	-0.00050889	-2.3318	-0.001211	519.3148161010914	35.841	0.88163	35.841	35.417	36.298	0					102	23	8	0	0	0	0.024397	1	2793	2793		31.53	0	1	1708000	+		68629	30863	48156	48235	74551	74551					0.09731960182671173
RPRPALKAE	9	Unmodified	_RPRPALKAE_					0	0	0			REV__ENST00000358739.4_1_6:27775991-27776072:+|nuORF	REV__ENST00000358739.4_1_6:27775991-27776072:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.3146362304688	2	519.314358	1036.61416	-1.224	-0.00063566	0.39294	0.00020406	-0.8311	-0.0004316	519.3147145371648	35.667	0.92305	35.626	35.215	36.138	-0.040627					69	24	4	0	0	0	0.72494	1	2753	2753		44.377	5.3557	1	1476700	+		68630	30863	48156	48235	74552	74552					0.09731960182671173
RPRPAVST	8	Unmodified	_RPRPAVST_					0	0	0			REV__ENST00000521478.1_1_7:27186941-27190216:-|nuORF	REV__ENST00000521478.1_1_7:27186941-27190216:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.25897216796875	2	442.259051	882.503549	-0.47595	-0.00021049	-0.25944	-0.00011474	-0.73539	-0.00032523	442.2585808287291	23.567	1.675	23.506	22.753	24.428	-0.060862					74	38	4	0	0	0	0.96769	1	928	928		42.396	1.618	1	1149600	+		68631	34318	48157	48236	74553	74553					0.05759740194423557
RPRPCRSP	8	Unmodified	_RPRPCRSP_					0	0	0		ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2704162597656	2	484.763978	967.513402	-0.72418	-0.00035106	-2.7341	-0.0013254	-3.4583	-0.0016765	484.762272204691	31.912	0.43879	31.981	31.805	32.244	0.068962					20	10	3	0	0	0	0.027866	1	2114	2114		37.159	0	1	296360			68632	11766	48158	48237	74554	74554					0.0283460492814811
RPRPCRSP	8	Unmodified	_RPRPCRSP_					0	0	0		ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	ENST00000287652.8_1_3:10290066-10290432:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.763978	967.513402	-0.51833	-0.00025127	-2.7417	-0.0013291	-3.26	-0.0015803	484.7622309160549	32.168	0.54501	32.18	31.943	32.488	0.011799	0.099357	-4.2354E-06	NaN	21.96	41	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313710			68633	11766	48158	48237							0.0283460492814811
RPRPDDLEI	9	Unmodified	_RPRPDDLEI_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.7991333007812	2	555.798737	1109.58292	0.16222	9.0164E-05	-0.93117	-0.00051755	-0.76895	-0.00042738	555.7979245099013	41.014	1.1023	40.89	40.584	41.687	-0.12317					78	30	3	0	0	0	0.28753	1	3639	3639		77.318	20.597	1	3363000			68634	6289	48159	48238	74555	74555					0.03251342357884823
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.3243408203125	2	518.324725	1034.6349	-0.21581	-0.00011186	-0.52755	-0.00027344	-0.74336	-0.0003853	518.3244601169113	41.102	1.5936	41.102	40.728	42.322	0					125	45	5	0	0	0	0.25032	4	3681	3647;3669;3681;3706		82.305	21.854	1	15158000			68635	2270	48160	48239	74556;74557;74558;74559	74558					0.11896550562323682
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.32421875	2	518.324725	1034.6349	0.08768	4.5447E-05	-0.709	-0.00036749	-0.62132	-0.00032204	518.3243620525237	41.272	1.5634	41.149	40.797	42.361	-0.12317					129	44	5	0	0	0	0.31247	3	3704	3668;3679;3704		73.975	15.193	1	14259000			68636	2270	48160	48239	74560;74561;74562	74562					0.11896550562323682
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.3244018554688	2	518.324725	1034.6349	-0.37454	-0.00019413	-0.2907	-0.00015068	-0.66524	-0.00034481	518.3245893120571	41.32	1.5204	41.343	40.97	42.49	0.023003					124	43	5	0	0	0	0.43973	2	3652	3652;3677		63.306	7.8021	1	13707000			68637	2270	48160	48239	74563;74564	74563					0.11896550562323682
RPRPGPATR	9	Unmodified	_RPRPGPATR_					0	0	0		ENST00000443023.5_1_2:200323000-200323417:-|nuORF	ENST00000443023.5_1_2:200323000-200323417:-|nuORF	ENST00000443023.5_1_2:200323000-200323417:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2963562011719	2	504.296499	1006.57845	2.0822	0.00105	-3.0847	-0.0015556	-1.0025	-0.00050553	504.29506486810294	18.553	1.7931	18.553	18.186	19.979	0					92	36	4	0	0	0	0.2508	3	311	311;323;336		82.241	5.4664	1	7252400			68638	14391	48161	48240	74565;74566;74567	74565					0.07541922725658878
RPRPGPATR	9	Unmodified	_RPRPGPATR_					0	0	0		ENST00000443023.5_1_2:200323000-200323417:-|nuORF	ENST00000443023.5_1_2:200323000-200323417:-|nuORF	ENST00000443023.5_1_2:200323000-200323417:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.2964782714844	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	0.2508	1	298	298		82.241	5.4664	1	5749100			68639	14391	48161	48240	74568	74568					0.07541922725658878
RPRPGPEL	8	Unmodified	_RPRPGPEL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000576972.5_1_16:67914666-67915321:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.26409912109375	2	461.266876	920.519199	-0.28514	-0.00013152	-3.7877	-0.0017472	-4.0729	-0.0018787	461.26486069917354	92.236	2.0337	92.228	91.708	93.742	-0.0082932					92	48	3	0	0	0	1.0574	1	11659	11659		25.45	0	1	1651600			68640	1052	48162	48241	74569	74569					0.0557602671146924
RPRPGRPTA	9	Unmodified	_RPRPGRPTA_					0	0	0		ENST00000595681.5_1_19:6754625-6763810:-|nuORF;ENSG00000125731|ENST00000245908|SH2D3A;ENST00000595369.1_1_19:6759548-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	ENST00000595681.5_1_19:6754625-6763810:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.2965087890625	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	0.18915	1	287	287		90.777	5.4172	1	5749100			68641	4131	48163	48242	74570	74570					0.07541922725658878
RPRPGSHL	8	Unmodified	_RPRPGSHL_					0	0	0			REV__ENSG00000146216|ENST00000259750|TTBK1	REV__ENSG00000146216|ENST00000259750|TTBK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.26116943359375	2	460.264668	918.514782	0.012143	5.5892E-06	-4.1924	-0.0019296	-4.1802	-0.001924	460.262506281111	27.969	1.5484	28.05	27.319	28.868	0.081291					85	38	4	0	0	0	0.95679	1	1526	1526		44.117	5.0953	1	1451700	+		68642	24469	48164	48243	74571	74571					0.05226562288567038
RPRPGWRGRGR	11	Unmodified	_RPRPGWRGRGR_					0	0	0			REV__ENST00000476941.5_1_3:142442973-142443402:+|nuORF	REV__ENST00000476941.5_1_3:142442973-142443402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7431335449219	3	450.92906	1349.76535	-0.82129	-0.00037034	3.4079	0.0015367	2.5866	0.0011664	451.2641575251164	26.879	0.23118	26.96	26.799	27.031	0.081293					6	5	2	0	0	0	0.02477	1	1368	1368		8.4073	0	1	19166	+		68643	33317	48165	48244	74572	74572					0.10445959333856081
RPRPLWATV	9	Unmodified	_RPRPLWATV_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3;ITGB3|p.M150*|1|0.33|ENSG00000259207|chr17:47284527-47284527|C/-|frameshift_variant	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2954711914062	2	548.324725	1094.6349	-0.2267	-0.00012431	2.2171	0.0012157	1.9904	0.0010914	548.8274093307068	19.712	0.13806	19.712	19.644	19.782	0					4	2	2	0	0	0	0.024427	1	456	456		42.396	15.703	1	14773			68644	10934	48166	48245	74573	74573					0.0913655056231164
RPRPPITLL	9	Unmodified	_RPRPPITLL_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.84228515625	2	531.842751	1061.67095	-0.28351	-0.00015078	-0.41246	-0.00021937	-0.69597	-0.00037015	531.8424932057815	51.305	1.4201	51.305	50.74	52.16	0					109	39	5	0	0	0	0.85329	3	5437	5414;5425;5437		35.618	1.4457	1	12077000			68645	5037	48167	48246	74574;74575;74576	74576					0.14258007739181267
RPRPPITLL	9	Unmodified	_RPRPPITLL_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8424072265625	2	531.842751	1061.67095	-1.2085	-0.00064275	0.40339	0.00021454	-0.80514	-0.00042821	531.8429371334788	51.191	1.3698	51.278	50.785	52.155	0.087009					109	37	5	0	0	0	0.85329	3	5351	5328;5351;5363		35.618	6.1195	1	8850700			68646	5037	48167	48246	74577;74578;74579	74578					0.14258007739181267
RPRPPTLL	8	Unmodified	_RPRPPTLL_					0	0	0		SETX-EIF3B|1|fusion;ENST00000475415.5_1_7:2414943-2418434:+|nuORF;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	SETX-EIF3B|1|fusion;ENSG00000106263|ENST00000360876|EIF3B	SETX-EIF3B|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.30035400390625	2	475.300719	948.586885	-0.51101	-0.00024288	0.15065	7.1604E-05	-0.36036	-0.00017128	475.3007226816317	39.623	1.5892	39.513	38.796	40.385	-0.1097					118	43	5	0	0	0	0.94517	1	3398	3398		45.952	7.1458	1	7759200			68647	37870;2771	48168	48247	74580	74580					0.11053476642291571
RPRPRPATG	9	Unmodified	_RPRPRPATG_					0	0	0		ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;ENSG00000066739|ENST00000359933|ATG2B	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.29644775390625	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	0.20967	2	310	310;322		87.754	5.5138	1	5749100			68648	143	48169	48248	74581;74582	74581					0.07541922725658878
RPRPRPRSL	9	Unmodified	_RPRPRPRSL_					0	0	0		ENST00000610033.5_1_20:50140124-50159164:-|nuORF	ENST00000610033.5_1_20:50140124-50159164:-|nuORF	ENST00000610033.5_1_20:50140124-50159164:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.2694091796875	2	567.851973	1133.68939	-0.3013	-0.00017109	1.9336	0.001098	1.6323	0.00092693	567.8531278586307	54.819	0.28326	54.669	54.574	54.857	-0.15036					12	7	2	0	0	0	0.024541	1	6010	6010		10.866	0	1	116240			68649	17614	48170	48249	74583	74583					0.1278956243374978
RPRPSEDTFL	10	Unmodified	_RPRPSEDTFL_					0	0	0		ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	609.3172607421875	2	609.317294	1216.62004	-0.71207	-0.00043388	0.47992	0.00029242	-0.23215	-0.00014145	609.3174938437617	40.156	0.67198	40.156	39.879	40.551	0					55	18	4	0	0	0	0.67616	1	3509	3509		47.657	0	1	2756000			68650	6844	48171	48250	74584	74584					0.020390139036408073
RPRPSEDTFL	10	Unmodified	_RPRPSEDTFL_					0	0	0		ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	609.317138671875	2	609.317294	1216.62004	-0.23002	-0.00014016	0.37936	0.00023115	0.14933	9.0992E-05	609.3172854973353	40.261	0.76511	40.149	39.83	40.595	-0.11223					64	20	4	0	0	0	0.58878	2	3503	3503;3514		47.657	3.108	1	2774000			68651	6844	48171	48250	74585;74586	74585					0.020390139036408073
RPRPSPAAR	9	Unmodified	_RPRPSPAAR_					0	0	0		ENST00000216127.4_1_22:35936954-35937053:+|nuORF	ENST00000216127.4_1_22:35936954-35937053:+|nuORF	ENST00000216127.4_1_22:35936954-35937053:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2975769042969	2	504.296499	1006.57845	-0.057145	-2.8818E-05	-0.84698	-0.00042713	-0.90412	-0.00045595	504.2961960132727	18.802	2.191	18.67	18.352	20.543	-0.13148					113	44	4	0	0	0	0.64897	1	369	369		49.536	0.094497	1	6611200			68652	11155	48172	48251	74587	74587					0.0754192272564751
RPRPSPAAR	9	Unmodified	_RPRPSPAAR_					0	0	0		ENST00000216127.4_1_22:35936954-35937053:+|nuORF	ENST00000216127.4_1_22:35936954-35937053:+|nuORF	ENST00000216127.4_1_22:35936954-35937053:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.2969055175781	2	504.296499	1006.57845	3.4337	0.0017316	-4.245	-0.0021407	-0.81133	-0.00040915	504.29448508392176	18.81	2.499	18.873	18.452	20.951	0.063307					132	50	5	0	0	0	0.89441	1	372	372		32.812	0	1	5749100			68653	11155	48172	48251	74588	74588					0.0754192272564751
RPRPSTGL	8	Unmodified	_RPRPSTGL_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2589416503906	2	442.259051	882.503549	-0.31404	-0.00013888	0.51412	0.00022738	0.20009	8.8491E-05	442.2591233861213	23.597	1.2353	23.597	23.283	24.518	0					71	28	4	0	0	0	0.81662	1	939	939		57.811	2.3071	1	1141300			68654	6940	48173	48252	74589	74589					0.05759740194423557
RPRPSTGL	8	Unmodified	_RPRPSTGL_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2590026855469	2	442.259051	882.503549	-0.47595	-0.00021049	-0.25944	-0.00011474	-0.73539	-0.00032523	442.2585808287291	23.567	1.675	23.506	22.753	24.428	-0.060862					74	38	4	0	0	0	0.93274	1	940	940		47.916	1.9636	1	1149600			68655	6940	48173	48252	74590	74590					0.05759740194423557
RPRPSTGL	8	Unmodified	_RPRPSTGL_					0	0	0		ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	ENSG00000162413|ENST00000377658|KLHL21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.25897216796875	2	442.259051	882.503549	-0.13629	-6.0275E-05	0.30818	0.0001363	0.17189	7.6021E-05	442.25902065714075	23.462	1.1735	23.539	23.234	24.408	0.076241					65	26	3	0	0	0	0.6248	2	887	877;887		73.975	1.647	1	1206400			68656	6940	48173	48252	74591;74592	74592					0.05759740194423557
RPRPTKTSF	9	Unmodified	_RPRPTKTSF_					0	0	0		ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.31201171875	2	545.311815	1088.60908	-0.9513	-0.00051875	0.82763	0.00045132	-0.12366	-6.7435E-05	545.3121133723938	22.315	0.653	22.315	22.012	22.665	0					39	13	4	0	0	0	0.14024	1	783	783		101.6	13.846	1	546060			68657	2197	48174	48253	74593	74593					0.06831656320036927
RPRPTKTSF	9	Unmodified	_RPRPTKTSF_					0	0	0		ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.311767578125	2	545.311815	1088.60908	-0.98501	-0.00053714	0.91394	0.00049838	-0.071068	-3.8754E-05	545.3121570120651	22.385	0.79719	22.31	21.987	22.784	-0.075296					47	16	4	0	0	0	0.48817	1	773	773		60.118	12.461	1	453150			68658	2197	48174	48253	74594	74594					0.06831656320036927
RPRPTKTSF	9	Unmodified	_RPRPTKTSF_					0	0	0		ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.311767578125	2	545.311815	1088.60908	-1.8515	-0.0010096	1.7502	0.00095438	-0.10132	-5.5251E-05	545.3126437675891	22.236	0.71889	22.31	21.981	22.7	0.073954					40	14	4	0	0	0	0.70156	1	732	732		45.972	3.4978	1	420770			68659	2197	48174	48253	74595	74595					0.06831656320036927
RPRQGVAFKHT	11	Unmodified	_RPRQGVAFKHT_					0	0	0		ENST00000442133.8_1_10:75256199-75264836:+|nuORF	ENST00000442133.8_1_10:75256199-75264836:+|nuORF	ENST00000442133.8_1_10:75256199-75264836:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.9156188964844	3	432.914305	1295.72109	-0.41842	-0.00018114	2.0432	0.00088454	1.6248	0.0007034	432.9154714908963	32.501	1.431	32.513	31.863	33.294	0.011795					122	37	5	0	0	0	0.81748	1	2266	2266		56.632	10.175	1	6600900			68660	14377	48175	48254	74596	74596					0.08505510397026228
RPRQITTQ	8	Unmodified	_RPRQITTQ_					0	0	0			REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.2879638671875	2	500.28834	998.562127	-0.33128	-0.00016573	-1.4077	-0.00070426	-1.739	-0.00087	500.288101290541	23.906	0.77846	23.906	23.651	24.429	0					56	17	5	0	0	0	0.77775	2	1003	981;1003		60.972	4.2509	1	2615000	+		68661	37523	48176	48255	74597;74598	74598					0.06278796768879147
RPRQITTQ	8	Unmodified	_RPRQITTQ_					0	0	0			REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.2878723144531	2	500.28834	998.562127	-0.91018	-0.00045535	-1.2919	-0.00064634	-2.2021	-0.0011017	500.28843612336397	23.917	1.2062	23.87	23.281	24.487	-0.047148					66	27	5	0	0	0	0.89627	1	979	979		51.335	8.861	1	2416300	+		68662	37523	48176	48255	74599	74599					0.06278796768879147
RPRQITTQ	8	Unmodified	_RPRQITTQ_					0	0	0			REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.2880859375	2	500.28834	998.562127	-0.024409	-1.2211E-05	-1.9152	-0.00095813	-1.9396	-0.00097034	500.2880362581526	23.812	1.0567	23.888	23.351	24.408	0.076241					66	23	6	0	0	0	0.71833	1	934	934		65.803	10.299	1	2767700	+		68663	37523	48176	48255	74600	74600					0.06278796768879147
RPRQLRPPP	9	Unmodified	_RPRQLRPPP_					0	0	0			REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.3240966796875	2	558.841074	1115.66759	1	0.00055884	-3.0345	-0.0016958	-2.0345	-0.001137	558.839501765068	99.028	0.96799	98.904	98.504	99.472	-0.12459					37	24	2	0	0	0	0.024541	1	12260	12260		31.955	0	1	64439	+		68664	31738	48177	48256	74601	74601					0.11438757685164092
RPRQLRPPP	9	Unmodified	_RPRQLRPPP_					0	0	0			REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.841074	1115.66759	0.22254	0.00012436	-2.4864	-0.0013895	-2.2639	-0.0012652	558.8402156030165	99.125	0.93009	99.125	98.562	99.492	0	0.079646	-7.2431E-05	NaN	31.955	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66799	+		68665	31738	48177	48256							0.11438757685164092
RPRQLRPPP	9	Unmodified	_RPRQLRPPP_					0	0	0			REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.841074	1115.66759	-0.085273	-4.7654E-05	-1.7929	-0.001002	-1.8782	-0.0010496	558.8404004791269	99.002	0.92389	99.012	98.522	99.446	0.010231	-0.033797	0.00070271	NaN	31.955	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92967	+		68666	31738	48177	48256							0.11438757685164092
RPRQLRPPP	9	Unmodified	_RPRQLRPPP_					0	0	0			REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	REV__ENST00000572090.5_3_16:11944247-11945326:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.841074	1115.66759	0.53097	0.00029673	-2.6863	-0.0015012	-2.1553	-0.0012045	558.8398196222246	98.987	0.96925	98.983	98.554	99.523	-0.0038834	-0.06241	-0.00029582	NaN	31.955	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77317	+		68667	31738	48177	48256							0.11438757685164092
RPRQTDHL	8	Unmodified	_RPRQTDHL_					0	0	0		AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|5|2|sense	AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|5|2|sense	AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|5|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.7793884277344	2	511.778139	1021.54173	-0.74242	-0.00037996	2.0193	0.0010335	1.2769	0.0006535	511.77939508185494	29.619	1.1097	29.374	29.011	30.121	-0.24524					93	25	6	0	0	0	0.97924	1	1848	1848		40.573	1.3198	1	7571100			68668	78	48178	48257	74602	74602					0.03181626109096669
RPRQTDHL	8	Unmodified	_RPRQTDHL_					0	0	0		AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|5|2|sense	AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|5|2|sense	AluSx1_dup105873|chr19:18572335-18572629:-|1.2452278483268997|0.0188810566591458|6.04|522.0|5|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7795715332031	2	511.778139	1021.54173	-0.24176	-0.00012373	1.5617	0.00079924	1.3199	0.00067551	511.7791751010672	29.467	1.3471	29.317	28.912	30.259	-0.14952					92	31	6	0	0	0	0.59392	1	1797	1797		76.847	4.9692	1	8065000			68669	78	48178	48257	74603	74603					0.03181626109096669
RPRQTLAT	8	Unmodified	_RPRQTLAT_					0	0	0			REV__ENST00000499247.2_1_17:48940951-48941035:-|nuORF	REV__ENST00000499247.2_1_17:48940951-48941035:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7878112792969	2	471.777608	941.540663	-0.48532	-0.00022896	-0.086366	-4.0746E-05	-0.57169	-0.00026971	471.7773493446063	24.027	0.51714	23.979	23.571	24.088	-0.047148					17	11	2	0	0	0	0.027866	1	961	961		25.45	16.628	1	254020	+		68670	33896	48179	48258	74604	74604					0.0675541174019827
RPRRCWWRWPR	11	Unmodified	_RPRRCWWRWPR_					0	0	0		ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	ENST00000341500.9_1_19:7267817-7293934:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.25341796875	3	552.296867	1653.86877	-1.2713	-0.00070213	-1.8285	-0.0010099	-3.0998	-0.001712	552.2965073477762	46.013	0.1648	45.861	45.789	45.954	-0.15156					6	4	2	0	0	0	0.024904	1	4495	4495		1.4188	0	1	232580			68671	12495	48180	48259	74605	74605					0.06799123449991384
RPRRDAAERCA	11	Unmodified	_RPRRDAAERCA_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2537841796875	3	434.226555	1299.65783	-0.3816	-0.0001657	3.8489	0.0016713	3.4673	0.0015056	434.2283081904696	29.081	0.53142	29.084	28.672	29.204	0.0031376					19	12	2	0	0	0	0.024734	1	1685	1685		34.087	3.5176	1	88500			68672	4574	48181	48260	74606	74606					0.019992016174910532
RPRRGGVL	8	Unmodified	_RPRRGGVL_					0	0	0		ENST00000263708.6_1_2:120517366-120517459:+|nuORF	ENST00000263708.6_1_2:120517366-120517459:+|nuORF	ENST00000263708.6_1_2:120517366-120517459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.7713623046875	2	455.78831	909.562067	-0.046481	-2.1185E-05	3.3536	0.0015285	3.3071	0.0015073	455.7901384567074	73.51	0.23217	73.233	73.133	73.365	-0.2769					7	5	2	0	0	0	0.027866	1	8631	8631		50.025	14.824	1	65294			68673	11541	48182	48261	74607	74607					0.1036684155956209
RPRRLCAP	8	Unmodified	_RPRRLCAP_					0	0	0			REV__ENST00000548468.2_1_12:50506008-50558837:+|nuORF	REV__ENST00000548468.2_1_12:50506008-50558837:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2873840332031	2	484.78217	967.549788	-0.8433	-0.00040882	-4.0223	-0.0019499	-4.8656	-0.0023587	484.779979044201	23.754	1.2258	23.693	23.069	24.295	-0.060862					51	28	2	0	0	0	0.027866	1	874	874		44.531	19.081	1	469520	+		68674	34877	48183	48262	74608	74608					0.06471481824860348
RPRRMARF	8	Unmodified	_RPRRMARF_					0	0	0		FERD3L|p.E48D|1|0.64|ENSG00000146618|chr7:19145219-19145219|C/G|missense_variant;ENSG00000146618|ENST00000275461|FERD3L	FERD3L|p.E48D|1|0.64|ENSG00000146618|chr7:19145219-19145219|C/G|missense_variant	FERD3L|p.E48D|1|0.64|ENSG00000146618|chr7:19145219-19145219|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.311767578125	2	545.314169	1088.61378	-1.8515	-0.0010096	-2.5668	-0.0013997	-4.4183	-0.0024094	545.3126437675891	22.236	0.71889	22.31	21.981	22.7	0.073954					40	14	4	0	0	0	0.91239	1	722	722		50.025	2.3672	1	420770			68675	5897	48184	48263	74609	74609					0.07302261981817537
RPRRPRRWWRQ	11	Unmodified	_RPRRPRRWWRQ_					0	0	0		ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.19476318359375	4	413.242267	1648.93996	-0.43073	-0.000178	2.1281	0.00087941	1.6974	0.00070142	413.4926981993936	23.106	0.32333	22.923	22.694	23.018	-0.18296					8	6	2	0	0	0	0.024898	1	886	886		1.3219	1.0097	1	42238			68676	13021	48185	48264	74610	74610					0.1414495947906289
RPRRPVFH	8	Unmodified	_RPRRPVFH_					0	0	0			REV__ENST00000492937.1_1_3:156389792-156392120:-|nuORF	REV__ENST00000492937.1_1_3:156389792-156392120:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7684326171875	2	532.814859	1063.61517	-0.10612	-5.6544E-05	-1.2959	-0.00069045	-1.402	-0.00074699	532.8140097284587	25.067	0.66504	25.147	24.916	25.581	0.08009					40	15	3	0	0	0	0.027866	1	1075	1075		13.775	2.9098	1	905920	+		68677	33750	48186	48265	74611	74611					0.08590219342227101
RPRRREREGT	10	Unmodified	_RPRRREREGT_					0	0	0		ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.2455749511719	3	438.248347	1311.72321	-0.29726	-0.00013027	-3.0898	-0.0013541	-3.3871	-0.0014844	438.2467666049744	27.959	2.6891	27.955	27.178	29.868	-0.0042019					182	67	4	0	0	0	1.1081	1	1604	1604		31.634	8.2564	1	1440200			68678	17145	48187	48266	74612	74612					0.07981939134833738
RPRRREREGT	10	Unmodified	_RPRRREREGT_					0	0	0		ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.2471008300781	3	438.248347	1311.72321	-0.31996	-0.00014022	-2.9411	-0.0012889	-3.261	-0.0014291	438.24721304343535	26.589	0.9957	26.67	26.249	27.245	0.081291					92	24	6	0	0	0	1.0074	2	1312	1312;1324		45.022	16.445	1	7103500			68679	17145	48187	48266	74613;74614	74613					0.07981939134833738
RPRRRLQPHLP	11	Unmodified	_RPRRRLQPHLP_					0	0	0		ENST00000420304.6_1_1:226125489-226127509:-|nuORF	ENST00000420304.6_1_1:226125489-226127509:-|nuORF	ENST00000420304.6_1_1:226125489-226127509:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.30670166015625	3	475.960249	1424.85892	-0.061016	-2.9041E-05	1.9672	0.0009363	1.9062	0.00090726	475.9609903972723	63.677	1.0857	63.485	63.148	64.234	-0.19243					68	27	4	0	0	0	0.024759	1	7304	7304		36.318	3.2782	1	1706200			68680	13971	48188	48267	74615	74615					0.16348258716311648
RPRRRLQPHLP	11	Unmodified	_RPRRRLQPHLP_					0	0	0		ENST00000420304.6_1_1:226125489-226127509:-|nuORF	ENST00000420304.6_1_1:226125489-226127509:-|nuORF	ENST00000420304.6_1_1:226125489-226127509:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	475.960249	1424.85892	0.32074	0.00015266	1.5026	0.0007152	1.8234	0.00086786	475.96075383366724	63.729	0.79468	63.471	63.162	63.956	-0.25824	-0.025447	0.0011894	NaN	36.318	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1724700			68681	13971	48188	48267							0.16348258716311648
RPRRRPRSW	9	Unmodified	_RPRRRPRSW_					0	0	0			REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF	REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	633.8704223632812	2	633.873771	1265.73299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.946	1	94.808	94.308	95.308	-0.13779								0	0	0	0.61872	1	11703	11703		37.159	5.6293	1		+		68682	33963	48189	48268	74616	74616					0.11075171930883698
RPRRRVCWAL	10	Unmodified	_RPRRRVCWAL_					0	0	0		ENSG00000149428|ENST00000617285|HYOU1;ENST00000526354.1_1_11:118926460-118927810:-|nuORF;ENST00000533381.5_1_11:118925895-118927580:-|nuORF	ENSG00000149428|ENST00000617285|HYOU1	ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2457580566406	3	438.255897	1311.74586	-0.58758	-0.00025751	4.3414	0.0019026	3.7538	0.0016451	438.2575222631729	28.229	0.77186	28.229	27.924	28.696	0					45	18	4	0	0	0	0.03519	1	1621	1621		42.864	17.738	1	357810			68683	6087	48190	48269	74617	74617					0.10245866998752717
RPRRRVCWAL	10	Unmodified	_RPRRRVCWAL_					0	0	0		ENSG00000149428|ENST00000617285|HYOU1;ENST00000526354.1_1_11:118926460-118927810:-|nuORF;ENST00000533381.5_1_11:118925895-118927580:-|nuORF	ENSG00000149428|ENST00000617285|HYOU1	ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.2458190917969	3	438.255897	1311.74586	-0.15131	-6.6312E-05	4.3382	0.0019012	4.1869	0.0018349	438.2576159629386	27.951	0.57579	28.032	27.795	28.371	0.081291					36	13	4	0	0	0	0.03519	1	1556	1556		42.864	26.944	1	279940			68684	6087	48190	48269	74618	74618					0.10245866998752717
RPRRSLCPTVQ	11	Unmodified	_RPRRSLCPTVQ_					0	0	0			REV__nc|ENSG00000088888|Q7Z434-6|MAVS	REV__nc|ENSG00000088888|Q7Z434-6|MAVS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.2469787597656	3	438.247067	1311.71937	0.053673	2.3522E-05	-0.46128	-0.00020215	-0.4076	-0.00017863	438.24702929565854	26.722	1.0373	26.722	26.324	27.361	0					95	25	5	0	0	0	1.0123	4	1423	1375;1386;1397;1423		34.087	6.976	1	7865700	+		68685	36495	48191	48270	74619;74620;74621;74622	74622					0.07598133316764688
RPRRSLCPTVQ	11	Unmodified	_RPRRSLCPTVQ_					0	0	0			REV__nc|ENSG00000088888|Q7Z434-6|MAVS	REV__nc|ENSG00000088888|Q7Z434-6|MAVS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.2467041015625	3	438.247067	1311.71937	-0.5257	-0.00023039	-0.13472	-5.9039E-05	-0.66041	-0.00028942	438.2468703737847	28.067	2.8505	28.067	27.286	30.137	0					179	71	5	0	0	0	1.044	2	1598	1598;1610		26.75	4.1881	1	2868100	+		68686	36495	48191	48270	74623;74624	74623					0.07598133316764688
RPRRSLCPTVQ	11	Unmodified	_RPRRSLCPTVQ_					0	0	0			REV__nc|ENSG00000088888|Q7Z434-6|MAVS	REV__nc|ENSG00000088888|Q7Z434-6|MAVS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.24725341796875	3	438.247067	1311.71937	-0.31996	-0.00014022	-0.020486	-8.9779E-06	-0.34045	-0.0001492	438.24721304343535	26.589	0.9957	26.67	26.249	27.245	0.081291					92	24	6	0	0	0	1.0592	1	1338	1338		22.562	1.5294	1	7103500	+		68687	36495	48191	48270	74625	74625					0.07598133316764688
RPRRSRGIVTD	11	Unmodified	_RPRRSRGIVTD_					0	0	0			REV__nc|ENSG00000140465|P04798-3|CYP1A1	REV__nc|ENSG00000140465|P04798-3|CYP1A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2461853027344	3	438.256731	1311.74836	-0.2918	-0.00012788	2.6494	0.0011611	2.3576	0.0010332	438.2576290934918	28.17	0.52922	28.166	27.929	28.458	-0.0042					32	12	4	0	0	0	0.024734	1	1629	1629		27.644	0	1	337580	+		68688	19640	48192	48271	74626	74626					0.10495993937411185
RPRRTGVAGC	10	Unmodified	_RPRRTGVAGC_					0	0	0			REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7459106445312	2	536.793266	1071.57198	-0.75493	-0.00040524	-3.9393	-0.0021146	-4.6942	-0.0025198	536.7907047928285	30.232	0.80742	30.082	29.792	30.599	-0.14952					61	18	5	0	0	0	0.03519	1	1872	1872		35.152	16.828	1	1378400	+		68689	33639	48193	48272	74627	74627					0.03905661502631119
RPRRWVTVHV	10	Unmodified	_RPRRWVTVHV_					0	0	0		ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.8841857910156	3	435.926545	1304.75781	0.15429	6.7259E-05	-0.45847	-0.00019986	-0.30418	-0.0001326	435.9259054942576	18.292	0.44587	18.089	17.816	18.262	-0.20371					11	8	2	0	0	0	0.03519	1	277	277		16.007	0	1	33627			68690	7530	48194	48273	74628	74628					0.11761807013590442
RPRSAAPRP	9	Unmodified	_RPRSAAPRP_					0	0	0			REV__ENSG00000130758|ENST00000253055|MAP3K10	REV__ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.29638671875	2	504.296499	1006.57845	-0.057145	-2.8818E-05	-0.84698	-0.00042713	-0.90412	-0.00045595	504.2961960132727	18.802	2.191	18.67	18.352	20.543	-0.13148					113	44	4	0	0	0	0.20967	2	319	319;331		87.754	10.908	1	6611200	+		68691	23150	48195	48274	74629;74630	74629					0.0754192272564751
RPRSASLV	8	Unmodified	_RPRSASLV_					0	0	0		ENSG00000176563|ENST00000588408|CNTD1	ENSG00000176563|ENST00000588408|CNTD1	ENSG00000176563|ENST00000588408|CNTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2660217285156	2	443.266876	884.519199	-0.25223	-0.00011181	0.36137	0.00016018	0.10913	4.8374E-05	443.26690640637804	26.337	0.73701	26.314	25.998	26.735	-0.023088					50	17	4	0	0	0	0.91956	1	1319	1319		49.442	3.4896	1	2118100			68692	8649	48196	48275	74631	74631					0.07232026711471917
RPRSPCTN	8	Unmodified	_RPRSPCTN_					0	0	0			REV__ENSG00000179299|ENST00000381782|NSUN7	REV__ENSG00000179299|ENST00000381782|NSUN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2562561035156	2	465.732343	929.450133	0.86958	0.00040499	0.98962	0.0004609	1.8592	0.00086589	465.73347005825696	59.465	0.30309	59.465	59.295	59.598	0					11	7	2	0	0	0	0.027866	1	6769	6769		44.117	7.0883	1	58951	+		68693	27255	48197	48276	74632	74632					-0.01741380579755969
RPRSRFVF	8	Unmodified	_RPRSRFVF_					0	0	0		ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8421020507812	2	532.809242	1063.60393	-0.86854	-0.00046277	-0.48025	-0.00025588	-1.3488	-0.00071865	532.8084089698189	51.404	0.56746	51.256	51.008	51.576	-0.14857					20	15	2	0	0	0	0.027866	1	5458	5458		20.947	7.9877	1	280820			68694	14321	48198	48277	74633	74633					0.07467397248069574
RPRSRFVF	8	Unmodified	_RPRSRFVF_					0	0	0		ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.809242	1063.60393	-0.90327	-0.00048127	-3.8329	-0.0020422	-4.7362	-0.0025235	532.8077889337145	51.412	0.57594	51.136	50.891	51.467	-0.27643	-0.098178	-0.0034862	NaN	20.947	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154090			68695	14321	48198	48277							0.07467397248069574
RPRSRSQKKH	10	Unmodified	_RPRSRSQKKH_					0	0	0			REV__ENSG00000139767|ENST00000267260|SRRM4	REV__ENSG00000139767|ENST00000267260|SRRM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.3027648925781	3	427.253321	1278.73813	0.30748	0.00013137	-2.4632	-0.0010524	-2.1557	-0.00092102	427.2522446399223	69.853	1.0665	69.602	69.115	70.182	-0.25063					41	25	2	0	0	0	0.03519	1	8171	8171		27.047	10.517	1	191640	+		68696	23964	48199	48278	74634	74634					0.10991431002844365
RPRSSCTGPSC	11	Unmodified	_RPRSSCTGPSC_					0	0	0			REV__ENST00000401827.7_1_8:66753961-66754186:-|nuORF	REV__ENST00000401827.7_1_8:66753961-66754186:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.7616577148438	2	575.758232	1149.50191	2.5003	0.0014396	3.1896	0.0018365	5.69	0.003276	575.7599587348586	16.939	0.66926	16.939	16.78	17.449	0					36	15	4	0	0	0	1.0344	1	101	101		29.17	0.020503	1	571000	+		68697	31864	48200	48279	74635	74635					-0.06686004948141999
RPRSSTVM	8	Oxidation (M)	_RPRSSTVM(Oxidation (M))_		RPRSSTVM(1)		RPRSSTVM(44)	0	0	1		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.24822998046875	2	475.247826	948.481099	4.393	0.0020878	-4.2787	-0.0020334	0.11438	5.4361E-05	475.2456111500671	17.041	0.34361	17.041	16.907	17.25	0					19	7	4	0	0	0	0.95679	1	116	116		44.117	8.4985	1	161290			68698	1393	48201	48280	74636	74636		43			0.004797727345135172
RPRTFFAI	8	Unmodified	_RPRTFFAI_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2969055175781	2	504.292894	1006.57123	2.0822	0.00105	4.0646	0.0020497	6.1468	0.0030998	504.29506486810294	18.553	1.7931	18.553	18.186	19.979	0					92	36	4	0	0	0	0.6536	1	287	287		71.296	2.5089	1	7252400	+		68699	20130	48202	48281	74637	74637					0.068211901252198
RPRTIPAPE	9	Unmodified	_RPRTIPAPE_					0	0	0		ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7982788085938	2	518.79854	1035.58253	-1.3939	-0.00072316	1.0855	0.00056315	-0.30843	-0.00016001	518.7988768627044	30.846	1.4461	30.846	30.343	31.789	0					92	34	6	0	0	0	0.45795	1	2029	2029		62.107	4.2961	1	3886000			68700	10463	48203	48282	74638	74638					0.06615967428706426
RPRTLLSA	8	Unmodified	_RPRTLLSA_					0	0	0		ENST00000559126.5_1_15:85186703-85196938:-|nuORF;ENSG00000177082|ENST00000434634|WDR73;ENST00000559015.5_1_15:85186703-85191289:-|nuORF;ENST00000558608.1_1_15:85186703-85189170:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.28240966796875	2	457.282526	912.550499	-0.29121	-0.00013316	-0.31657	-0.00014476	-0.60778	-0.00027793	457.28237025203055	34.61	1.2279	34.605	34.298	35.526	-0.0045624					65	31	4	0	0	0	1.0574	1	2600	2600		27.882	1.0861	1	8202400			68701	8704	48204	48283	74639	74639					0.09072599745570642
RPRTLVATL	9	Unmodified	_RPRTLVATL_					0	0	0			REV__ENST00000473508.1_1_2:74750418-74753390:-|nuORF	REV__ENST00000473508.1_1_2:74750418-74753390:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.8252563476562	2	513.824558	1025.63456	-1.07	-0.00054978	0.6728	0.0003457	-0.39717	-0.00020408	513.8250496412749	39.615	0.83077	39.509	39.191	40.022	-0.10654					81	22	5	0	0	0	0.94809	1	3441	3441		29.15	3.6994	1	10422000	+		68702	33237	48205	48284	74640	74640					0.12277130842471706
RPRTPGGL	8	Unmodified	_RPRTPGGL_					0	0	0			REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF	REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2538757324219	2	427.253769	852.492984	-0.63751	-0.00027238	0.23833	0.00010183	-0.39919	-0.00017055	427.2539474170651	23.379	2.0397	23.379	22.479	24.518	0					128	46	5	0	0	0	0.91239	2	929	917;929		50.025	0	1	16896000	+		68703	29883	48206	48285	74641;74642	74642					0.060837575400114474
RPRTPLSLS	9	Unmodified	_RPRTPLSLS_					0	0	0		ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7877197265625	2	513.806365	1025.59818	-1.0694	-0.00054948	-0.64966	-0.0003338	-1.7191	-0.00088328	513.8062178264498	24.198	0.80067	24.151	23.913	24.714	-0.047148					34	17	3	0	0	0	0.024261	1	1010	1010		64.207	11.271	1	146270			68704	16902	48207	48286	74643	74643					0.08640253945782206
RPRTPLSLS	9	Unmodified	_RPRTPLSLS_					0	0	0		ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.787841796875	2	513.806365	1025.59818	-0.28249	-0.00014514	-1.237	-0.0006356	-1.5195	-0.00078074	513.8060340981873	24.128	0.68105	24.207	23.912	24.594	0.078344					30	14	3	0	0	0	0.024344	1	955	955		45.972	0	1	197600			68705	16902	48207	48286	74644	74644					0.08640253945782206
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.3003845214844	2	475.300719	948.586885	1.1773	0.00055957	-1.532	-0.00072814	-0.35467	-0.00016858	475.29993416274027	39.578	1.4466	39.578	38.868	40.314	0					101	40	4	0	0	0	0.93274	3	3416	3392;3403;3416		47.916	0	1	9076000			68706	14865	48208	48287	74645;74646;74647	74647					0.11053476642291571
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.3003845214844	2	475.300719	948.586885	-0.51101	-0.00024288	0.15065	7.1604E-05	-0.36036	-0.00017128	475.3007226816317	39.623	1.5892	39.513	38.796	40.385	-0.1097					118	43	5	0	0	0	0.87148	4	3389	3389;3410;3423;3435		53.351	0	1	7759200			68707	14865	48208	48287	74648;74649;74650;74651	74648					0.11053476642291571
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.3006286621094	2	475.300719	948.586885	-0.53596	-0.00025474	0.28601	0.00013594	-0.24995	-0.0001188	475.3007751420258	39.842	1.6963	39.866	39.135	40.831	0.023727					113	47	4	0	0	0	0.93274	5	3409	3384;3398;3409;3420;3433		47.916	1.647	1	8639100			68708	14865	48208	48287	74652;74653;74654;74655;74656	74654					0.11053476642291571
RPRVGGGPLL	10	Unmodified	_RPRVGGGPLL_					0	0	0			REV__ENST00000406606.7_3_9:136628636-136628813:-|nuORF	REV__ENST00000406606.7_3_9:136628636-136628813:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3165283203125	2	511.3169	1020.61925	-1.2788	-0.00065385	0.89716	0.00045873	-0.3816	-0.00019512	511.31725009157276	22.363	1.2903	22.437	21.594	22.884	0.073954					60	26	4	0	0	0	0.9856	1	737	737		47.916	3.3845	1	461210	+		68709	31923	48209	48288	74657	74657					0.10976264045291373
RPRVPHGGRV	10	Unmodified	_RPRVPHGGRV_					0	0	0			REV__ENST00000367607.7_2_1:179924016-179959652:+|nuORF	REV__ENST00000367607.7_2_1:179924016-179959652:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.8343505859375	2	565.836323	1129.65809	-1.1442	-0.00064744	-0.2682	-0.00015176	-1.4124	-0.0007992	565.8360609583052	21.62	0.6226	21.62	21.342	21.965	0					38	12	4	0	0	0	1.089	1	693	693		34.173	1.3601	1	535670	+		68710	31028	48210	48289	74658	74658					0.09844989399630322
RPRVPHGGRV	10	Unmodified	_RPRVPHGGRV_					0	0	0			REV__ENST00000367607.7_2_1:179924016-179959652:+|nuORF	REV__ENST00000367607.7_2_1:179924016-179959652:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.8347778320312	2	565.836323	1129.65809	-0.62303	-0.00035253	-0.86549	-0.00048973	-1.4885	-0.00084226	565.8357018663767	21.674	0.76295	21.584	21.304	22.067	-0.090094					40	15	4	0	0	0	0.96965	1	681	681		49.442	18.938	1	559400	+		68711	31028	48210	48289	74659	74659					0.09844989399630322
RPRVRSAA	8	Unmodified	_RPRVRSAA_					0	0	0			REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2750244140625	2	456.777942	911.541332	-0.26717	-0.00012204	-3.1098	-0.0014205	-3.377	-0.0015425	456.77647138218026	27.568	0.44164	27.555	27.241	27.683	-0.012983					27	11	3	0	0	0	0.027866	1	1496	1496		16.473	9.2798	1	1221500	+		68712	37529	48211	48290	74660	74660					0.08202251179886844
RPRVRSAA	8	Unmodified	_RPRVRSAA_					0	0	0			REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	REV__sp|P03189|ITP_EBVB9InnertegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BOLF1PE=3SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2621154785156	2	456.777942	911.541332	0.24014	0.00010969	-0.31839	-0.00014544	-0.078251	-3.5743E-05	456.7778534197015	18.764	0.53899	18.633	18.352	18.891	-0.13147					15	10	2	0	0	0	0.027866	1	339	339		23.042	0	1	44359	+		68713	37529	48211	48290	74661	74661					0.08202251179886844
RPRWGEAERR	10	Unmodified	_RPRWGEAERR_					0	0	0			REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	438.2469787597656	3	438.23756	1311.69085	0.019157	8.3953E-06	-1.8671	-0.00081824	-1.848	-0.00080984	438.23663703948426	26.846	0.21007	26.846	26.783	26.993	0					5	4	2	0	0	0	0.03519	1	1423	1423		40.058	5.9717	1	50268	+		68714	33640	48212	48291	74662	74662					0.04747151731839949
RPRWGEAERR	10	Unmodified	_RPRWGEAERR_					0	0	0			REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	438.23756	1311.69085	-0.77816	-0.00034102	2.7578	0.0012085	1.9796	0.00086753	438.2387167974419	26.85	0.77353	26.608	26.262	27.035	-0.24217	-0.034004	0.00050275	NaN	40.058	49	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693460	+		68715	33640	48212	48291							0.04747151731839949
RPRWGEAERR	10	Unmodified	_RPRWGEAERR_					0	0	0			REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	438.23756	1311.69085	-0.31498	-0.00013804	2.3857	0.0010455	2.0707	0.00090745	438.23855105340255	26.69	0.6265	26.522	26.224	26.851	-0.16816	-0.12029	1.3552E-05	NaN	40.058	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541080	+		68716	33640	48212	48291							0.04747151731839949
RPRWGEAERR	10	Unmodified	_RPRWGEAERR_					0	0	0			REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	REV__ENST00000488315.5_1_7:149570336-149570612:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	438.23756	1311.69085	-0.20247	-8.8732E-05	2.1261	0.00093174	1.9236	0.00084301	438.2384040570647	26.756	0.79387	26.593	26.344	27.138	-0.16331	-0.04933	-0.00032768	NaN	40.058	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615500	+		68717	33640	48212	48291							0.04747151731839949
RPRWLAPIA	9	Unmodified	_RPRWLAPIA_					0	0	0			REV__chr19:2078679-2080576|139|12.24|0.45|4.78|-|2|TE_info:AluSx,AluSx_dup103714,Alu,SINE,donor,-,2080576,2080674|MOB3A,None|1	REV__chr19:2078679-2080576|139|12.24|0.45|4.78|-|2|TE_info:AluSx,AluSx_dup103714,Alu,SINE,donor,-,2080576,2080674|MOB3A,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.3262939453125	2	540.327268	1078.63998	-1.2357	-0.00066771	0.37525	0.00020276	-0.8605	-0.00046495	540.327358091049	48.808	0.86705	48.707	48.358	49.225	-0.1008					64	22	4	0	0	0	0.36105	1	4862	4862		68.485	17.149	1	3163900	+		68718	19393	48213	48292	74663	74663					0.10380854424920472
RPRWLAPIA	9	Unmodified	_RPRWLAPIA_					0	0	0			REV__chr19:2078679-2080576|139|12.24|0.45|4.78|-|2|TE_info:AluSx,AluSx_dup103714,Alu,SINE,donor,-,2080576,2080674|MOB3A,None|1	REV__chr19:2078679-2080576|139|12.24|0.45|4.78|-|2|TE_info:AluSx,AluSx_dup103714,Alu,SINE,donor,-,2080576,2080674|MOB3A,None|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3270263671875	2	540.327268	1078.63998	-0.69538	-0.00037573	-0.22337	-0.00012069	-0.91875	-0.00049642	540.3270259583758	49.113	0.85931	48.833	48.538	49.397	-0.27977					72	22	5	0	0	0	0.67308	1	4896	4896		47.916	1.9636	1	3357000	+		68719	19393	48213	48292	74664	74664					0.10380854424920472
RPSAAGINL	9	Unmodified	_RPSAAGINL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.7591247558594	2	449.758884	897.503215	-0.53805	-0.00024199	0.0014517	6.5291E-07	-0.5366	-0.00024134	449.75889799941183	44.584	1.398	44.584	44.215	45.613	0					110	40	4	0	0	0	0.247	1	4273	4273		82.75	13.964	1	13254000			68720	4938	48214	48293	74665	74665					0.05036320474550848
RPSAAGINL	9	Unmodified	_RPSAAGINL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	449.758884	897.503215	-0.17865	-8.0348E-05	-0.22183	-9.9772E-05	-0.40048	-0.00018012	449.7587851634818	44.66	1.2673	44.697	44.306	45.573	0.0369	0.0657	-0.00024411	NaN	82.75	103	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13619000			68721	4938	48214	48293							0.05036320474550848
RPSAAVRICA	10	Unmodified	_RPSAAVRICA_					0	0	0			REV__ENST00000557552.1_1_14:105239464-105240028:-|nuORF	REV__ENST00000557552.1_1_14:105239464-105240028:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	522.290771484375	2	522.292568	1042.57058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.638	1	20.707	20.207	21.207	0.068901								0	0	0	0.75273	1	521	521		44.377	0.26039	1		+		68722	35074	48215	48294	74666	74666					0.05100027413868702
RPSAGRPL	8	Unmodified	_RPSAGRPL_					0	0	0		ENST00000467343.1_1_9:131858374-131860312:-|nuORF	ENST00000467343.1_1_9:131858374-131860312:-|nuORF	ENST00000467343.1_1_9:131858374-131860312:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2538757324219	2	427.253769	852.492984	-0.63751	-0.00027238	0.23833	0.00010183	-0.39919	-0.00017055	427.2539474170651	23.379	2.0397	23.379	22.479	24.518	0					128	46	5	0	0	0	0.87148	1	905	905		53.351	3.3269	1	16896000			68723	14835	48216	48295	74667	74667					0.0608375753998871
RPSAGRPL	8	Unmodified	_RPSAGRPL_					0	0	0		ENST00000467343.1_1_9:131858374-131860312:-|nuORF	ENST00000467343.1_1_9:131858374-131860312:-|nuORF	ENST00000467343.1_1_9:131858374-131860312:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2535705566406	2	427.253769	852.492984	-0.58472	-0.00024982	0.18764	8.0168E-05	-0.39709	-0.00016966	427.2539224512093	23.349	2.0442	23.288	22.52	24.564	-0.06086					112	46	4	0	0	0	0.77775	2	931	907;931		60.972	5.4677	1	17423000			68724	14835	48216	48295	74668;74669	74669					0.0608375753998871
RPSEAREPP	9	Unmodified	_RPSEAREPP_					0	0	0		NPPC|p.P36Afs*?|1|0.69|ENSG00000163273|chr2:231925701-231925702|-/G|frameshift_variant	NPPC|p.P36Afs*?|1|0.69|ENSG00000163273|chr2:231925701-231925702|-/G|frameshift_variant	NPPC|p.P36Afs*?|1|0.69|ENSG00000163273|chr2:231925701-231925702|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7698364257812	2	519.76998	1037.52541	-0.48433	-0.00025174	0.13074	6.7957E-05	-0.35358	-0.00018378	519.769958266437	22.197	0.76038	22.121	21.841	22.602	-0.075296					44	15	4	0	0	0	0.48817	1	746	746		60.118	6.7668	1	569110			68725	18887	48217	48296	74670	74670					0.008145001523189421
RPSGAVVTL	9	Unmodified	_RPSGAVVTL_					0	0	0		ENST00000596477.1_1_19:50059010-50060533:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.26904296875	2	450.269084	898.523616	-0.010534	-4.7432E-06	-0.26401	-0.00011888	-0.27455	-0.00012362	450.26886631273015	43.787	0.95152	43.818	43.486	44.437	0.030827					71	26	5	0	0	0	0.2508	1	4068	4068		82.241	2.7895	1	6325000			68726	5569	48218	48297	74671	74671					0.07029491134380805
RPSGIAITPDG	11	Unmodified	_RPSGIAITPDG_					0	0	0		ENSG00000206557|ENST00000383763|TRIM71	ENSG00000206557|ENST00000383763|TRIM71	ENSG00000206557|ENST00000383763|TRIM71	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2955932617188	2	542.293288	1082.57202	3.2511	0.0017631	0.94073	0.00051015	4.1919	0.0022732	542.2936863791565	18.412	1.8912	18.475	18.222	20.113	0.063307					66	38	4	0	0	0	1.0017	1	256	256		36.447	0.82846	1	653300			68727	10473	48219	48298	74672	74672					0.034039399835819495
RPSGKRLGF	9	Unmodified	_RPSGKRLGF_					0	0	0		ENST00000294256.12_2_11:64895574-64895820:-|nuORF	ENST00000294256.12_2_11:64895574-64895820:-|nuORF	ENST00000294256.12_2_11:64895574-64895820:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.93408203125	2	509.30125	1016.58795	0.29412	0.0001498	-0.84488	-0.0004303	-0.55076	-0.0002805	509.30075205001395	18.915	0.44408	18.711	18.46	18.904	-0.20371					12	8	2	0	0	0	0.024487	1	361	361		31.955	9.995	1	48114			68728	11812	48220	48299	74673	74673					0.08031691011183284
RPSGKRLGF	9	Unmodified	_RPSGKRLGF_					0	0	0		ENST00000294256.12_2_11:64895574-64895820:-|nuORF	ENST00000294256.12_2_11:64895574-64895820:-|nuORF	ENST00000294256.12_2_11:64895574-64895820:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.30125	1016.58795	2.3113	0.0011771	-2.2511	-0.0011465	0.06021	3.0665E-05	509.3000218347468	18.875	0.4452	18.632	18.474	18.919	-0.24256	-0.042067	-0.0011969	NaN	31.955	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42737			68729	11812	48220	48299							0.08031691011183284
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.2430419921875	2	455.243067	908.47158	0.44191	0.00020118	-0.72258	-0.00032895	-0.28067	-0.00012777	455.2427083256664	36.56	1.5059	36.56	36.229	37.735	0					118	40	5	0	0	0	0.094442	5	2899	2899;2910;2922;2934;2946		112.41	32.752	1	10046000			68730	1686	48221	48300	74674;74675;74676;74677;74678	74674					0.013683277206155253
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.2430725097656	2	455.243067	908.47158	-0.44147	-0.00020098	0.14923	6.7937E-05	-0.29224	-0.00013304	455.24311875445176	36.41	1.4406	36.368	36.032	37.473	-0.042454					107	38	4	0	0	0	0.062622	5	2859	2859;2870;2882;2895;2908		124.08	44.368	1	9845200			68731	1686	48221	48300	74679;74680;74681;74682;74683	74679					0.013683277206155253
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA2-DMRT1|1|fusion	ENSG00000080503|ENST00000349721|SMARCA2	ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.24285888671875	2	455.243067	908.47158	-0.24671	-0.00011231	0.032165	1.4643E-05	-0.21454	-9.7669E-05	455.24305710369043	36.513	1.5415	36.551	36.065	37.606	0.038044					113	41	4	0	0	0	0.03666	6	2828	2828;2837;2849;2861;2874;2887		136.27	53.963	1	9788500			68732	1686	48221	48300	74684;74685;74686;74687;74688;74689	74684					0.013683277206155253
RPSGPRPSPP	10	Unmodified	_RPSGPRPSPP_					0	0	0			REV__ENSG00000188883|ENST00000340940|KLRG2	REV__ENSG00000188883|ENST00000340940|KLRG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2870483398438	2	524.28834	1046.56213	-0.2719	-0.00014256	-0.84239	-0.00044165	-1.1143	-0.00058421	524.2881088611321	28.184	1.053	28.265	27.646	28.699	0.080811					61	25	5	0	0	0	1.0393	1	1553	1553		40.778	0	1	3275100	+		68733	28074	48222	48301	74690	74690					0.04070796768883156
RPSGRARR	8	Unmodified	_RPSGRARR_					0	0	0			REV__ENST00000376499.7_2_9:84303220-84303679:-|nuORF	REV__ENST00000376499.7_2_9:84303220-84303679:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.75286865234375	2	478.286466	954.558379	0.14215	6.7989E-05	-1.8694	-0.00089409	-1.7272	-0.0008261	478.2873647847013	32.419	0.33877	32.419	32.34	32.679	0					14	8	2	0	0	0	0.027866	1	2279	2279		31.955	0	1	66707	+		68734	31354	48223	48302	74691	74691					0.07928171785692939
RPSGRIRASH	10	Unmodified	_RPSGRIRASH_					0	0	0		LTR7Y_dup61|chr4:182818487-182818919:+|8.954530819965708|0.2488539134292584|5.17|519.0|22|1|anti-sense;LTR7Y_dup194|chr13:109270684-109271116:+|4.307898892918061|0.2058520431326168|4.39|499.0|21|1|anti-sense	LTR7Y_dup61|chr4:182818487-182818919:+|8.954530819965708|0.2488539134292584|5.17|519.0|22|1|anti-sense	LTR7Y_dup61|chr4:182818487-182818919:+|8.954530819965708|0.2488539134292584|5.17|519.0|22|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2659301757812	2	568.823412	1135.63227	0.49408	0.00028104	-0.46425	-0.00026408	0.029831	1.6969E-05	568.8229255447534	22.583	0.32069	22.381	22.24	22.561	-0.20199					11	6	2	0	0	0	0.03519	1	769	769		47.96	8.7067	1	58510			68735	17940	48224	48303	74692	74692					0.06988095157362295
RPSLGAAR	8	Unmodified	_RPSLGAAR_					0	0	0		ENST00000608354.1_1_22:30642226-30642904:+|nuORF	ENST00000608354.1_1_22:30642226-30642904:+|nuORF	ENST00000608354.1_1_22:30642226-30642904:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.9058532714844	2	414.245944	826.477334	-0.011023	-4.5663E-06	0.7378	0.00030563	0.72677	0.00030106	414.246081931293	21.175	2.0736	21.085	19.898	21.972	-0.090092					62	42	3	0	0	0	0.027866	1	620	620		20.947	0	1	820730			68736	17591	48225	48304	74693	74693					0.057154710229383454
RPSLGGRTPL	10	Unmodified	_RPSLGGRTPL_					0	0	0		ENST00000607957.1_1_7:123389284-123389566:+|nuORF	ENST00000607957.1_1_7:123389284-123389566:+|nuORF	ENST00000607957.1_1_7:123389284-123389566:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3119506835938	2	527.311815	1052.60908	-0.081707	-4.3085E-05	-0.4292	-0.00022632	-0.5109	-0.00026941	527.3115405026913	36.883	0.88455	36.921	36.684	37.568	0.038044					46	22	3	0	0	0	0.96822	1	2904	2904		49.536	5.1589	1	3552400			68737	17583	48226	48305	74694	74694					0.08487656320039605
RPSLGRSL	8	Unmodified	_RPSLGRSL_					0	0	0		ENST00000597017.5_1_19:48894040-48894076:-|nuORF;ENST00000581080.1_1_17:38497122-38497602:-|nuORF	ENST00000597017.5_1_19:48894040-48894076:-|nuORF	ENST00000597017.5_1_19:48894040-48894076:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2662353515625	2	443.266876	884.519199	-0.16756	-7.4273E-05	0.27096	0.00012011	0.1034	4.5835E-05	443.26685016309347	26.341	0.78185	26.341	26.043	26.825	0					57	18	4	0	0	0	0.93437	1	1340	1340		47.657	0	1	1877600			68738	17158	48227	48306	74695	74695					0.07232026711460549
RPSLLSCLSM	10	Unmodified	_RPSLLSCLSM_					0	0	0			REV__ENST00000608395.1_1_3:151986322-151986712:-|nuORF	REV__ENST00000608395.1_1_3:151986322-151986712:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7885131835938	2	553.788469	1105.56239	0.44306	0.00024536	-0.22119	-0.00012249	0.22187	0.00012287	553.788145058579	19.005	0.79214	18.845	18.441	19.233	-0.16079					29	15	3	0	0	0	1.089	1	378	378		34.173	1.3601	1	313470	+		68739	35967	48228	48307	74696	74696					0.013827123822238718
RPSLLTRA	8	Unmodified	_RPSLLTRA_					0	0	0		ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2820739746094	2	457.282526	912.550499	-0.29121	-0.00013316	-0.31657	-0.00014476	-0.60778	-0.00027793	457.28237025203055	34.61	1.2279	34.605	34.298	35.526	-0.0045624					65	31	4	0	0	0	1.0516	1	2587	2587		29.15	0.89528	1	8202400			68740	10815	48229	48308	74697	74697					0.09072599745559273
RPSLPPSK	8	Unmodified	_RPSLPPSK_					0	0	0		nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	nc|ENSG00000100722|Q6PJT7-4|ZC3H14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78790283203125	2	441.263802	880.513051	0.87453	0.0003859	0.97174	0.00042879	1.8463	0.00081469	441.2641195473866	40.808	0.608	40.685	40.547	41.155	-0.12317					27	16	2	0	0	0	0.027866	1	3669	3669		45.952	0	1	187650			68741	2239	48230	48309	74698	74698					0.06801508479952645
RPSLRKLGI	9	Unmodified	_RPSLRKLGI_					0	0	0			REV__ENST00000463181.5_1_7:26240190-26240232:-|nuORF	REV__ENST00000463181.5_1_7:26240190-26240232:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3399658203125	2	520.340375	1038.6662	-0.84823	-0.00044137	0.26977	0.00014037	-0.57846	-0.000301	520.340348831719	23.013	1.1625	23.087	22.791	23.954	0.073954					64	26	4	0	0	0	0.77768	1	812	812		40.778	10.275	1	869850	+		68742	30795	48231	48310	74699	74699					0.14841123596397665
RPSLSRSVP	9	Unmodified	_RPSLSRSVP_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MSMS	OPSCC_39_ClassI_Rep-3	3	499.7899475097656	2	499.790715	997.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.256	1	29.335	28.835	29.835	0.078344								0	0	0	0.49967	1	1729	1729		52.937	1.744	1		+		68743	28550	48232	48311	74700	74700					0.06799680911660744
RPSMWAPR	8	Unmodified	_RPSMWAPR_					0	0	0		ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2879638671875	2	500.760904	999.507254	-0.35571	-0.00017812	0.79794	0.00039958	0.44223	0.00022145	500.7611204817278	24.057	0.47537	24.057	23.866	24.341	0					13	10	2	0	0	0	0.027866	1	1003	1003		23.042	3.939	1	30281			68744	12694	48233	48312	74701	74701					0.007480866966261601
RPSPGLAR	8	Unmodified	_RPSPGLAR_					0	0	0		nc|ENSG00000009790|Q9Y228-3|TRAF3IP3;nc|ENSG00000009790|Q9Y228-2|TRAF3IP3;ENSG00000009790|ENST00000367025|TRAF3IP3	nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2529602050781	2	427.253769	852.492984	-0.63751	-0.00027238	0.23833	0.00010183	-0.39919	-0.00017055	427.2539474170651	23.379	2.0397	23.379	22.479	24.518	0					128	46	5	0	0	0	0.94504	1	956	956		45.972	0.020292	1	16896000			68745	863	48234	48313	74702	74702					0.0608375753998871
RPSPIRAP	8	Unmodified	_RPSPIRAP_					0	0	0			REV__ENST00000306801.7_1_17:78939591-78939999:+|nuORF	REV__ENST00000306801.7_1_17:78939591-78939999:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.2701721191406	2	447.269419	892.524284	-0.24811	-0.00011097	0.18627	8.3312E-05	-0.061841	-2.7659E-05	447.2692191192014	22.41	1.2161	22.41	21.771	22.987	0					51	25	4	0	0	0	0.6536	1	787	787		71.296	3.802	1	443460	+		68746	30126	48235	48314	74703	74703					0.07372330574082753
RPSPLAPR	8	Unmodified	_RPSPLAPR_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.2706604003906	2	447.269419	892.524284	-0.24811	-0.00011097	0.18627	8.3312E-05	-0.061841	-2.7659E-05	447.2692191192014	22.41	1.2161	22.41	21.771	22.987	0					51	25	4	0	0	0	0.5947	1	801	801		76.774	5.4784	1	443460			68747	11013	48236	48315	74704	74704					0.07372330574082753
RPSPLAPR	8	Unmodified	_RPSPLAPR_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	447.269419	892.524284	-0.99609	-0.00044552	0.73752	0.00032987	-0.25857	-0.00011565	447.26952309847	22.363	1.2317	22.437	22.078	23.309	0.073954	0.0077717	0.00030012	NaN	76.774	48	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481290			68748	11013	48236	48315							0.07372330574082753
RPSPLLATG	9	Unmodified	_RPSPLLATG_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2748718261719	2	456.269084	910.523616	-0.28278	-0.00012902	1.6957	0.00077368	1.4129	0.00064466	456.27037668042	27.792	1.7927	27.788	27.214	29.006	-0.0042782					118	44	5	0	0	0	0.53979	1	1508	1508		56.721	12.604	1	12699000			68749	9882	48237	48316	74705	74705					0.06477491134387492
RPSPLLATG	9	Unmodified	_RPSPLLATG_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2749328613281	2	456.269084	910.523616	-0.46161	-0.00021062	2.0044	0.00091453	1.5427	0.00070391	456.2704592812881	27.585	1.4857	27.667	27.171	28.657	0.081291					100	37	5	0	0	0	0.70156	2	1436	1436;1446		45.972	10.354	1	13228000			68750	9882	48237	48316	74706;74707	74706					0.06477491134387492
RPSPPRAL	8	Unmodified	_RPSPPRAL_					0	0	0		ENST00000392391.7_3_3:196439305-196443731:+|nuORF	ENST00000392391.7_3_3:196439305-196443731:+|nuORF	ENST00000392391.7_3_3:196439305-196443731:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.2700500488281	2	447.269419	892.524284	-0.11589	-5.1835E-05	0.12988	5.8092E-05	0.013987	6.2561E-06	447.26914671978255	22.516	1.1252	22.441	21.841	22.966	-0.075296					64	23	4	0	0	0	0.87148	1	791	791		53.351	0.41475	1	405370			68751	13415	48238	48317	74708	74708					0.07372330574082753
RPSPPSPSP	9	Unmodified	_RPSPPSPSP_					0	0	0			REV__ENST00000452236.2_1_6:28554764-28555010:-|nuORF	REV__ENST00000452236.2_1_6:28554764-28555010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.3034362792969	2	461.243067	920.47158	-0.027186	-1.2539E-05	0.59336	0.00027368	0.56618	0.00026114	461.2430514532955	45.796	0.44268	45.796	45.613	46.056	0					25	12	3	0	0	0	0.024263	1	4504	4504		51.335	5.3835	1	324110	+		68752	32734	48239	48318	74709	74709					0.00816327720622212
RPSPPSPSP	9	Unmodified	_RPSPPSPSP_					0	0	0			REV__ENST00000452236.2_1_6:28554764-28555010:-|nuORF	REV__ENST00000452236.2_1_6:28554764-28555010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.30279541015625	2	461.243067	920.47158	0.30454	0.00014047	-0.33927	-0.00015649	-0.034725	-1.6017E-05	461.24283899275287	45.849	0.5128	45.893	45.647	46.16	0.04388					24	14	2	0	0	0	0.023417	1	4430	4430		68.787	0	1	500010	+		68753	32734	48239	48318	74710	74710					0.00816327720622212
RPSPVLLLL	9	Unmodified	_RPSPVLLLL_					0	0	0			REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1	REV__nc|ENSG00000050393|Q96AQ8-2|MCUR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2965393066406	2	504.334227	1006.6539	-0.048635	-2.4528E-05	2.3498	0.0011851	2.3012	0.0011605	504.33553870707414	18.801	0.24363	18.669	18.597	18.841	-0.13147					6	4	2	0	0	0	0.024506	1	343	343		30.504	5.0535	1	19200	+		68754	20158	48240	48319	74711	74711					0.15084087133379853
RPSQLLKR	8	Unmodified	_RPSQLLKR_					0	0	0		ENST00000537981.5_2_11:63523602-63525863:+|nuORF;nc|ENSG00000133318|O95197-6|RTN3	ENST00000537981.5_2_11:63523602-63525863:+|nuORF	ENST00000537981.5_2_11:63523602-63525863:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2879638671875	2	499.3169	996.619247	-0.27805	-0.00013883	0.052435	2.6182E-05	-0.22561	-0.00011265	499.3167411585935	24.086	0.30113	24.086	23.908	24.209	0					9	6	2	0	0	0	0.027866	1	1003	1003		47.916	9.1095	1	51114			68755	16381	48241	48320	74712	74712					0.12080264045289368
RPSQLLKR	8	Unmodified	_RPSQLLKR_					0	0	0		ENST00000537981.5_2_11:63523602-63525863:+|nuORF;nc|ENSG00000133318|O95197-6|RTN3	ENST00000537981.5_2_11:63523602-63525863:+|nuORF	ENST00000537981.5_2_11:63523602-63525863:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2881774902344	2	499.3169	996.619247	0.083846	4.1865E-05	-0.40751	-0.00020347	-0.32366	-0.00016161	499.3165160206214	23.992	0.35964	24.068	23.822	24.182	0.076241					10	7	2	0	0	0	0.027866	1	946	946		57.811	6.4758	1	45148			68756	16381	48241	48320	74713	74713					0.12080264045289368
RPSQVTVTT	9	Unmodified	_RPSQVTVTT_					0	0	0			REV__ENSG00000175262|ENST00000377004|C1orf127	REV__ENSG00000175262|ENST00000377004|C1orf127	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7767639160156	2	494.774731	987.534909	-0.60669	-0.00030018	1.239	0.00061302	0.6323	0.00031284	494.77586719633615	21.104	0.97571	21.104	20.562	21.537	0					41	19	4	0	0	0	0.86013	1	635	635		35.152	4.8343	1	2393700	+		68757	26932	48242	48321	74714	74714					0.04064268437866758
RPSRLASI	8	Unmodified	_RPSRLASI_					0	0	0			REV__ENST00000258796.11_1_7:2701400-2702321:+|nuORF	REV__ENST00000258796.11_1_7:2701400-2702321:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.7407531738281	2	450.274701	898.534849	-0.32857	-0.00014795	0.40789	0.00018366	0.07932	3.5716E-05	450.2747406256068	30.342	0.49582	30.351	30.042	30.538	0.0086708					18	11	2	0	0	0	0.027866	1	1949	1949		51.335	10.557	1	69021	+		68758	29582	48243	48322	74715	74715					0.08152313228504227
RPSRLVTG	8	Unmodified	_RPSRLVTG_					0	0	0			REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1;REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	REV__nc|ENSG00000118407|Q7Z7B0-2|FILIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2667236328125	2	443.266876	884.519199	-0.72455	-0.00032117	1.0148	0.00044984	0.29029	0.00012867	443.26723674965314	85.728	1.1392	85.752	85.367	86.506	0.023666					72	26	4	0	0	0	1.0574	1	10692	10692		24.203	1.1603	1	1182500	+		68759	22402;36602	48244	48323	74716	74716					0.07232026711471917
RPSRSGLL	8	Unmodified	_RPSRSGLL_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2249450683594	2	443.266876	884.519199	0.0055878	2.4769E-06	0.16696	7.4007E-05	0.17255	7.6484E-05	443.26683980930903	26.19	0.74745	26.271	25.967	26.714	0.081293					51	17	4	0	0	0	0.027866	1	1320	1320		24.203	0	1	1995700			68760	2807	48245	48324	74717	74717					0.07232026711483286
RPSRVASL	8	Unmodified	_RPSRVASL_					0	0	0			REV__nc|ENSG00000197361|Q6P050|FBXL22	REV__nc|ENSG00000197361|Q6P050|FBXL22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.26678466796875	2	443.266876	884.519199	0.0055878	2.4769E-06	0.16696	7.4007E-05	0.17255	7.6484E-05	443.26683980930903	26.19	0.74745	26.271	25.967	26.714	0.081293					51	17	4	0	0	0	0.89627	1	1273	1273		51.335	0	1	1995700	+		68761	37060	48246	48325	74718	74718					0.07232026711460549
RPSSGLGLSTL	11	Unmodified	_RPSSGLGLSTL_					0	0	0		ENST00000399813.1_1_22:18043396-18070735:+|nuORF	ENST00000399813.1_1_22:18043396-18070735:+|nuORF	ENST00000399813.1_1_22:18043396-18070735:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.308349609375	2	544.308938	1086.60332	-0.12844	-6.9913E-05	0.38557	0.00020987	0.25713	0.00013996	544.3091335060176	104.84	0.82566	104.72	104.29	105.11	-0.12561					63	23	4	0	0	0	1.0392	1	13053	13053		28.081	0.19925	1	843350			68762	13654	48247	48326	74719	74719					0.06348513017701407
RPSSIPAPAEA	11	Unmodified	_RPSSIPAPAEA_					0	0	0		nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2952880859375	2	548.293288	1094.57202	-0.17387	-9.5334E-05	3.5434	0.0019428	3.3696	0.0018475	548.2954263427797	19.621	2.2207	19.621	19.317	21.537	0					119	45	5	0	0	0	0.90725	1	481	481		51.193	10.415	1	7603900			68763	9317	48248	48327	74720	74720					0.028519399836113735
RPSSLLASV	9	Unmodified	_RPSSLLASV_					0	0	0		ENST00000313984.3_1_1:235643413-235647714:-|nuORF	ENST00000313984.3_1_1:235643413-235647714:-|nuORF	ENST00000313984.3_1_1:235643413-235647714:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7642517089844	2	465.274367	928.53418	-0.56933	-0.0002649	-0.64396	-0.00029962	-1.2133	-0.00056451	465.27377594021794	33.796	0.42445	33.796	33.626	34.05	0					23	10	3	0	0	0	0.024257	1	2454	2454		49.536	22.843	1	757000			68764	12111	48249	48328	74721	74721					0.06705473788815652
RPSSLPDLS	9	Unmodified	_RPSSLPDLS_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;nc|ENSG00000117713|O14497-2|ARID1A;ENSG00000117713|ENST00000324856|ARID1A;ARID1A|p.G731Vfs*12|1|0.29|ENSG00000117713|chr1:26761410-26761411|-/GT|frameshift_variant;ARID1A|p.G922Afs*2|1|0.16|ENSG00000117713|chr1:26766249-26766249|G/-|frameshift_variant;ARID1A|p.V1271Efs*21|1|0.06|ENSG00000117713|chr1:26773433-26773434|-/AGGAAATG|frameshift_variant;ARID1A|p.G1298Efs*15|1|0.07|ENSG00000117713|chr1:26773605-26773633|GGAAACATGAGCACTGGGGCCCCACAGCC/-|frameshift_variant;nc|ENSG00000117713|O14497-3|ARID1A	nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000117713|O14497-2|ARID1A	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2960205078125	2	486.261456	970.50836	-0.28802	-0.00014005	1.6583	0.00080636	1.3703	0.0006663	486.2620135412396	24.17	1.2231	24.248	23.868	25.091	0.078346					65	26	4	0	0	0	0.024457	1	1063	1063		29.15	0	1	764720			68765	1130;3657	48250	48329	74722	74722					0.021925795465335796
RPSSPIRIG	9	Unmodified	_RPSSPIRIG_					0	0	0			REV__ENST00000301908.7_2_8:28196983-28200541:+|nuORF	REV__ENST00000301908.7_2_8:28196983-28200541:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.7947082519531	2	491.793258	981.571963	-0.17102	-8.4108E-05	1.3181	0.00064823	1.1471	0.00056412	491.79379680569684	28.767	1.1524	28.848	28.574	29.727	0.080811					63	28	3	0	0	0	0.64897	1	1658	1658		49.536	1.8787	1	1908200	+		68766	30068	48251	48330	74723	74723					0.08043984774280943
RPSSPLSAPSP	11	Unmodified	_RPSSPLSAPSP_					0	0	0		ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2957763671875	2	548.293288	1094.57202	-0.17387	-9.5334E-05	3.5434	0.0019428	3.3696	0.0018475	548.2954263427797	19.621	2.2207	19.621	19.317	21.537	0					119	45	5	0	0	0	0.98904	1	513	513		39.253	0.44669	1	7603900			68767	13737	48252	48331	74724	74724					0.02851939983634111
RPSSPLSAPSP	11	Unmodified	_RPSSPLSAPSP_					0	0	0		ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2955932617188	2	548.293288	1094.57202	1.3792	0.00075621	2.0651	0.0011323	3.4443	0.0018885	548.2945708902448	19.755	1.8583	19.821	19.538	21.396	0.066195					101	37	5	0	0	0	1.0017	1	442	442		36.447	4.9169	1	5896600			68768	13737	48252	48331	74725	74725					0.02851939983634111
RPSSPSDLL	9	Unmodified	_RPSSPSDLL_					0	0	0			REV__ENSG00000144791|ENST00000273317|LIMD1	REV__ENSG00000144791|ENST00000273317|LIMD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2621765136719	2	486.261456	970.50836	-0.28802	-0.00014005	1.6583	0.00080636	1.3703	0.0006663	486.2620135412396	24.17	1.2231	24.248	23.868	25.091	0.078346					65	26	4	0	0	0	0.77768	1	985	985		40.778	0.20554	1	764720	+		68769	24361	48253	48332	74726	74726					0.021925795465335796
RPSSPSDLL	9	Unmodified	_RPSSPSDLL_					0	0	0			REV__ENSG00000144791|ENST00000273317|LIMD1	REV__ENSG00000144791|ENST00000273317|LIMD1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	486.261456	970.50836	-0.61828	-0.00030065	2.1701	0.0010553	1.5519	0.00075461	486.2622568517632	24.273	1.1864	24.273	23.866	25.052	0	0.0083125	7.6562E-05	NaN	40.778	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1071300	+		68770	24361	48253	48332							0.021925795465335796
RPSSRAVL	8	Unmodified	_RPSSRAVL_					0	0	0		nc|ENSG00000183853|Q96J84-2|KIRREL1;nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2663879394531	2	443.266876	884.519199	-0.16756	-7.4273E-05	0.27096	0.00012011	0.1034	4.5835E-05	443.26685016309347	26.341	0.78185	26.341	26.043	26.825	0					57	18	4	0	0	0	0.87148	2	1352	1329;1352		53.351	6.585	1	1877600			68771	18580	48254	48333	74727;74728	74728					0.07232026711460549
RPSSRAVL	8	Unmodified	_RPSSRAVL_					0	0	0		nc|ENSG00000183853|Q96J84-2|KIRREL1;nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.26654052734375	2	443.266876	884.519199	-0.25223	-0.00011181	0.36137	0.00016018	0.10913	4.8374E-05	443.26690640637804	26.337	0.73701	26.314	25.998	26.735	-0.023088					50	17	4	0	0	0	0.87148	2	1342	1330;1342		53.351	5.6941	1	2118100			68772	18580	48254	48333	74729;74730	74730					0.07232026711460549
RPSSRAVL	8	Unmodified	_RPSSRAVL_					0	0	0		nc|ENSG00000183853|Q96J84-2|KIRREL1;nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.266876	884.519199	-0.8651	-0.00038347	1.1999	0.00053189	0.33484	0.00014842	443.26753851768706	26.461	0.34886	26.225	26.067	26.416	-0.23603	-0.045611	0.00080472	NaN	53.351	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97274			68773	18580	48254	48333							0.07232026711460549
RPSSRAVL	8	Unmodified	_RPSSRAVL_					0	0	0		nc|ENSG00000183853|Q96J84-2|KIRREL1;nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	nc|ENSG00000183853|Q96J84-2|KIRREL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.266876	884.519199	-0.60946	-0.00027015	1.33	0.00058953	0.72051	0.00031938	443.2674442985335	26.366	0.49893	26.203	26.038	26.537	-0.16331	-0.067862	0.00091999	NaN	53.351	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113210			68774	18580	48254	48333							0.07232026711460549
RPSSRSLT	8	Unmodified	_RPSSRSLT_					0	0	0		ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2539978027344	2	452.253966	902.493378	1.1165	0.00050495	-1.0169	-0.00045989	0.099637	4.5061E-05	452.25341789298176	20.532	0.59036	20.601	20.366	20.956	0.068901					32	11	4	0	0	0	0.83003	1	511	511		56.721	1.2168	1	310340			68775	7929	48255	48334	74731	74731					0.03823132469176471
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.2145080566406	3	414.214198	1239.62076	0.30197	0.00012508	-0.33766	-0.00013986	-0.035692	-1.4784E-05	414.2141460658926	24.339	1.0986	24.339	24.036	25.135	0					76	24	5	0	0	0	0.97516	2	1040	1040;1061		42.338	3.624	1	6486500			68776	992	48256	48335	74732;74733	74732					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	620.8175659179688	2	620.817658	1239.62076	-0.81333	-0.00050493	0.60597	0.00037619	-0.20736	-0.00012874	620.8179720268789	24.344	0.66164	24.344	24.08	24.741	0					48	14	5	0	0	0	0.40024	2	1046	1046;1056		56.434	6.9922	1	1444400			68777	992	48256	48335	74734;74735	74734					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.2145080566406	3	414.214198	1239.62076	-0.68508	-0.00028377	0.6715	0.00027815	-0.013577	-5.6237E-06	414.2145575457352	24.378	0.89091	24.331	24.044	24.935	-0.047148					77	19	6	0	0	0	0.81748	2	1051	1039;1051		56.632	14.294	1	6607800			68778	992	48256	48335	74736;74737	74737					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	620.8179931640625	2	620.817658	1239.62076	-0.8817	-0.00054737	0.8193	0.00050863	-0.062399	-3.8738E-05	620.8180892958886	24.378	0.8026	24.331	24.088	24.891	-0.047148					49	17	4	0	0	0	0.59114	2	1041	1041;1053		61.691	30.161	1	1540300			68779	992	48256	48335	74738;74739	74738					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2145690917969	3	414.214198	1239.62076	0.23794	9.8557E-05	-0.26948	-0.00011162	-0.031538	-1.3063E-05	414.2141831334698	24.218	1.0455	24.297	24.003	25.049	0.078344					77	22	5	0	0	0	0.73278	2	971	971;982		61.765	12.434	1	6153700			68780	992	48256	48335	74740;74741	74740					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	620.8179931640625	2	620.817658	1239.62076	-0.46841	-0.0002908	0.26939	0.00016724	-0.19902	-0.00012356	620.8177900564056	24.22	0.77476	24.298	24.048	24.823	0.078346					52	16	5	0	0	0	0.51058	2	984	984;995		58.23	19.275	1	1471200			68781	992	48256	48335	74742;74743	74742					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	414.214198	1239.62076	-0.26079	-0.00010802	-2.6659	-0.0011042	-2.9266	-0.0012123	414.21255871950746	24.824	0.22262	24.649	24.554	24.777	-0.17484	0.24518	-0.0034185	NaN	61.765	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18803			68782	992	48256	48335							0.010538085527059593
RPSSVRLV	8	Unmodified	_RPSSVRLV_					0	0	0			REV__ENST00000594348.1_1_19:8429070-8436049:+|nuORF	REV__ENST00000594348.1_1_19:8429070-8436049:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.282470703125	2	457.282526	912.550499	0.076772	3.5106E-05	-0.1043	-4.7694E-05	-0.027527	-1.2588E-05	457.28231100748695	34.732	0.72501	34.514	34.185	34.91	-0.21806					43	17	4	0	0	0	0.98759	1	2581	2581		39.253	8.7492	1	2224900	+		68783	35776	48257	48336	74744	74744					0.09072599745570642
RPSTESQSI	9	Unmodified	_RPSTESQSI_					0	0	0			REV__ENST00000495287.1_1_3:138654865-138655105:-|nuORF	REV__ENST00000495287.1_1_3:138654865-138655105:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7539367675781	2	502.753995	1003.49344	-0.31154	-0.00015663	0.70338	0.00035363	0.39184	0.000197	502.75426561462433	26.265	1.1782	26.265	26.001	27.179	0					62	28	3	0	0	0	0.053401	1	1326	1326		127.46	11.968	1	2351100	+		68784	33800	48258	48337	74745	74745					-0.008169123214543106
RPSTESQSI	9	Unmodified	_RPSTESQSI_					0	0	0			REV__ENST00000495287.1_1_3:138654865-138655105:-|nuORF	REV__ENST00000495287.1_1_3:138654865-138655105:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	502.753995	1003.49344	-0.31154	-0.00015663	0.70338	0.00035363	0.39184	0.000197	502.75426561462433	26.265	1.1782	26.265	26.001	27.179	0	0.075072	8.3125E-05	NaN	127.46	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2351100	+		68785	33800	48258	48337							-0.008169123214543106
RPSTIRLA	8	Unmodified	_RPSTIRLA_					0	0	0			REV__ENST00000265801.6_2_8:20104216-20104552:-|nuORF	REV__ENST00000265801.6_2_8:20104216-20104552:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.28240966796875	2	457.282526	912.550499	-0.35785	-0.00016364	-0.065891	-3.0131E-05	-0.42374	-0.00019377	457.2824904903936	34.734	1.387	34.784	34.441	35.828	0.050251					74	35	5	0	0	0	1.0284	1	2567	2567		32.812	0	1	7974600	+		68786	29749	48259	48338	74746	74746					0.09072599745547905
RPSTPRLVQ	9	Unmodified	_RPSTPRLVQ_					0	0	0			REV__nc|ENSG00000265992|Q1W209|ESRG	REV__nc|ENSG00000265992|Q1W209|ESRG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3118896484375	2	527.311815	1052.60908	0.26285	0.0001386	-0.81339	-0.00042891	-0.55054	-0.00029031	527.3113494479176	36.895	0.83831	36.895	36.648	37.486	0					47	21	3	0	0	0	0.5973	2	2984	2969;2984		52.937	5.2794	1	4058800	+		68787	37191	48260	48339	74747;74748	74748					0.08487656320016868
RPSTPRLVQ	9	Unmodified	_RPSTPRLVQ_					0	0	0			REV__nc|ENSG00000265992|Q1W209|ESRG	REV__nc|ENSG00000265992|Q1W209|ESRG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.311767578125	2	527.311815	1052.60908	-0.33057	-0.00017431	-0.27038	-0.00014258	-0.60096	-0.00031689	527.3115949211424	36.757	0.83615	36.693	36.432	37.268	-0.063385					51	21	3	0	0	0	0.32811	2	2944	2920;2944		71.877	5.4482	1	3753000	+		68788	37191	48260	48339	74749;74750	74750					0.08487656320016868
RPSTPRLVQ	9	Unmodified	_RPSTPRLVQ_					0	0	0			REV__nc|ENSG00000265992|Q1W209|ESRG	REV__nc|ENSG00000265992|Q1W209|ESRG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3115844726562	2	527.311815	1052.60908	-0.081707	-4.3085E-05	-0.4292	-0.00022632	-0.5109	-0.00026941	527.3115405026913	36.883	0.88455	36.921	36.684	37.568	0.038044					46	22	3	0	0	0	0.67687	2	2916	2916;2928		47.657	3.2801	1	3552400	+		68789	37191	48260	48339	74751;74752	74751					0.08487656320016868
RPSTPRLVQ	9	Unmodified	_RPSTPRLVQ_					0	0	0			REV__nc|ENSG00000265992|Q1W209|ESRG	REV__nc|ENSG00000265992|Q1W209|ESRG	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	527.311815	1052.60908	-0.33057	-0.00017431	-0.27038	-0.00014258	-0.60096	-0.00031689	527.3115949211424	36.757	0.83615	36.693	36.432	37.268	-0.063385	-0.14312	0.00020587	NaN	71.877	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3753000	+		68790	37191	48260	48339							0.08487656320016868
RPSTRIQQQL	10	Unmodified	_RPSTRIQQQL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.5703125	3	409.570316	1225.68912	0.47709	0.0001954	-0.65174	-0.00026693	-0.17465	-7.1533E-05	409.5700698054109	32.399	1.1047	32.399	32.07	33.174	0					81	28	5	0	0	0	1.0236	1	2250	2250		42.864	0	1	5839100			68791	2258	48261	48340	74753	74753					0.08530097923221547
RPSTRIQQQL	10	Unmodified	_RPSTRIQQQL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.57037353515625	3	409.570316	1225.68912	0.049554	2.0296E-05	-0.21896	-8.9679E-05	-0.1694	-6.9383E-05	409.5702718980634	32.249	0.95272	32.261	31.902	32.855	0.011799					84	24	5	0	0	0	0.99657	1	2188	2188		46.457	3.5925	1	5516500			68792	2258	48261	48340	74754	74754					0.08530097923221547
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2539367675781	2	452.253966	902.493378	-0.73869	-0.00033408	-0.16118	-7.2892E-05	-0.89987	-0.00040697	452.2540057058061	20.492	1.9325	20.492	20.127	22.06	0					105	39	5	0	0	0	0.53523	5	557	522;533;545;557;581		82.305	18.359	1	9243800			68793	992	48262	48341	74755;74756;74757;74758;74759	74758					0.03823132469176471
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2537536621094	2	452.253966	902.493378	-0.25729	-0.00011636	-0.65897	-0.00029802	-0.91626	-0.00041438	452.253775839778	20.697	1.6327	20.592	20.277	21.909	-0.10477					90	33	5	0	0	0	0.53523	5	565	542;553;565;578;591		82.305	18.999	1	10662000			68794	992	48262	48341	74760;74761;74762;74763;74764	74762					0.03823132469176471
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	452.253966	902.493378	0.48195	0.00021797	-1.5161	-0.00068565	-1.0341	-0.00046768	452.2530627407484	20.95	0.34376	20.754	20.582	20.926	-0.19577	0.14438	-0.00078787	NaN	82.305	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26882			68795	992	48262	48341							0.03823132469176471
RPSTSRSTF	9	Unmodified	_RPSTSRSTF_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7698364257812	2	519.76998	1037.52541	-1.4238	-0.00074003	1.2341	0.00064144	-0.18969	-9.8593E-05	519.7705623493334	22.032	0.82103	22.103	21.83	22.651	0.071735					45	16	4	0	0	0	0.39228	1	696	696		66.429	0.96389	1	570340	+		68796	22407	48263	48342	74765	74765					0.008145001523189421
RPSTSTAVF	9	Unmodified	_RPSTSTAVF_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.25640869140625	2	483.256174	964.497795	-1.0898	-0.00052664	1.3254	0.00064049	0.2356	0.00011385	483.2566630105334	39.268	1.0233	39.292	38.919	39.942	0.023727					70	28	4	0	0	0	0.35646	2	3296	3296;3320		68.787	18.762	1	3485400			68797	1102	48264	48343	74766;74767	74766					0.014125968920893683
RPSVKTSL	8	Unmodified	_RPSVKTSL_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	444.2685852050781	2	444.269084	886.523616	-0.95612	-0.00042478	1.2413	0.00055145	0.28513	0.00012667	444.26949368681534	28.746	0.62421	28.746	28.449	29.073	0					46	14	4	0	0	0	0.47665	1	1701	1701		87.754	7.8151	1	1308500			68798	4780	48265	48344	74768	74768					0.07581491134385487
RPSVKTSL	8	Unmodified	_RPSVKTSL_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.26861572265625	2	444.269084	886.523616	-0.30838	-0.000137	0.46735	0.00020763	0.15897	7.0627E-05	444.2691427156042	28.712	0.50591	28.707	28.458	28.964	-0.0042019					39	11	4	0	0	0	0.42327	2	1689	1679;1689		94.006	19.27	1	1134900			68799	4780	48265	48344	74769;74770	74770					0.07581491134385487
RPSVKTSL	8	Unmodified	_RPSVKTSL_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.2689208984375	2	444.269084	886.523616	0.0076351	3.392E-06	-0.17747	-7.8844E-05	-0.16983	-7.5452E-05	444.2689325832623	28.474	0.6965	28.554	28.248	28.945	0.080811					42	16	4	0	0	0	0.47665	1	1610	1610		87.754	7.8151	1	1294600			68800	4780	48265	48344	74771	74771					0.07581491134385487
RPSVKTSL	8	Unmodified	_RPSVKTSL_					0	0	0		nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.2685241699219	2	444.269084	886.523616	-1.5302	-0.00067983	1.5191	0.00067488	-0.011129	-4.9442E-06	444.2696233076765	28.832	0.72957	28.586	28.281	29.011	-0.24524					28	16	2	0	0	0	0.38451	1	1715	1715		99.375	3.1845	1	1190600			68801	4780	48265	48344	74772	74772					0.07581491134385487
RPSVPEAAS	9	Unmodified	_RPSVPEAAS_					0	0	0		ENST00000413368.5_1_7:1126595-1126715:+|nuORF	ENST00000413368.5_1_7:1126595-1126715:+|nuORF	ENST00000413368.5_1_7:1126595-1126715:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.2825927734375	2	457.240524	912.466495	0.086693	3.964E-05	3.1212	0.0014271	3.2079	0.0014668	457.24148781347	34.538	0.27807	34.314	34.142	34.42	-0.22412					8	6	2	0	0	0	0.024263	1	2568	2568		9.1829	0.48922	1	58789			68802	13841	48266	48345	74773	74773					0.0067602385800000775
RPSVPSPKSAG	11	Unmodified	_RPSVPSPKSAG_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B;ENST00000462423.1_1_1:153904922-153905503:-|nuORF	ENSG00000198837|ENST00000361217|DENND4B;ENST00000462423.1_1_1:153904922-153905503:-|nuORF	ENST00000462423.1_1_1:153904922-153905503:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	541.800048828125	2	541.80128	1081.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.625	1	17.418	16.918	17.918	-0.20669								0	0	0	1.2579	1	197	197		28.081	5.039	1				68803	10220;14708	48267	48346	74774	74774					0.050476462205324424
RPSVRNGQL	9	Unmodified	_RPSVRNGQL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7920532226562	2	513.793789	1025.57303	-0.17257	-8.8665E-05	-0.39108	-0.00020094	-0.56365	-0.0002896	513.7935755033099	25.442	0.79526	25.522	25.294	26.09	0.080088					57	18	4	0	0	0	0.5973	1	1151	1151		52.937	2.9122	1	1742600			68804	3002	48268	48347	74775	74775					0.06126199143204758
RPSVRSVL	8	Unmodified	_RPSVRSVL_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2824401855469	2	457.282526	912.550499	-0.11737	-5.3669E-05	-0.39073	-0.00017868	-0.5081	-0.00023235	457.2823220451727	34.819	1.2079	34.819	34.479	35.687	0					65	31	4	0	0	0	1.043	1	2633	2633		30.504	0	1	8636700			68805	2881	48269	48348	74776	74776					0.09072599745559273
RPSVSSPRL	9	Unmodified	_RPSVSSPRL_					0	0	0			REV__ENST00000432005.6_1_19:37342773-37383818:+|nuORF	REV__ENST00000432005.6_1_19:37342773-37383818:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.790283203125	2	499.790715	997.566878	-0.6143	-0.00030702	0.60382	0.00030178	-0.010478	-5.2366E-06	499.7906710826299	29.483	1.1486	29.487	29.092	30.241	0.0031376					60	28	4	0	0	0	0.5973	2	1793	1793;1817		52.937	1.618	1	1862400	+		68806	32375	48270	48349	74777;74778	74777					0.06799680911672112
RPSWFPAQP	9	Unmodified	_RPSWFPAQP_					0	0	0		ENST00000283921.4_1_7:27211115-27211478:-|nuORF	ENST00000283921.4_1_7:27211115-27211478:-|nuORF	ENST00000283921.4_1_7:27211115-27211478:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2799072265625	2	543.279983	1084.54541	-1.065	-0.00057859	0.17688	9.6095E-05	-0.88812	-0.0004825	543.2801945113039	61.904	1.0963	61.726	61.287	62.383	-0.17782					114	27	6	0	0	0	0.17822	1	6922	6922		93.195	18.152	1	28882000			68807	11741	48271	48350	74779	74779					0.006522958829464187
RPSYHRQM	8	Unmodified	_RPSYHRQM_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENSG00000244405|ENST00000306376|ETV5;ENST00000489830.5_1_3:185782080-185797655:-|nuORF	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7669677734375	2	537.766717	1073.51888	-0.59265	-0.00031871	0.63745	0.0003428	0.044806	2.4095E-05	537.766876480266	19.873	0.43385	19.873	19.644	20.078	0					22	8	3	0	0	0	0.91956	1	470	470		49.442	8.0149	1	171900			68808	18765	48272	48351	74780	74780					-0.014937162800379156
RPSYPLLH	8	Unmodified	_RPSYPLLH_					0	0	0			REV__ENST00000566083.6_2_16:28493835-28503080:-|nuORF	REV__ENST00000566083.6_2_16:28493835-28503080:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2904052734375	2	491.777077	981.5396	-0.37904	-0.0001864	-3.5116	-0.0017269	-3.8906	-0.0019133	491.77510577866195	20.292	1.1033	20.187	19.557	20.661	-0.10477					31	22	2	0	0	0	0.027866	1	551	551		53.351	10.955	1	84037	+		68809	35294	48273	48352	74781	74781					0.04809197371275786
RPTAAELEEVL	11	Unmodified	_RPTAAELEEVL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MSMS	OPSCC_40_ClassI_Rep-3	6	409.8912048339844	3	409.890832	1226.65067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.369	1	28.217	27.717	28.717	-0.15195								0	0	0	1.0988	1	1627	1627		36.528	2.4414	1				68810	5353	48274	48353	74782	74782					0.04640747498046949
RPTALPTAGLV	11	Unmodified	_RPTALPTAGLV_					0	0	0			REV__chr2:20201044-20203087|148|120.95|0.97|6.96|-|2|None,SDC1|1	REV__chr2:20201044-20203087|148|120.95|0.97|6.96|-|2|None,SDC1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.3170166015625	2	548.329673	1094.64479	-0.61422	-0.0003368	1.1722	0.00064274	0.55796	0.00030595	548.3302710609223	42.643	1.0132	42.504	42.345	43.358	-0.13929					42	27	2	0	0	0	0.02419	1	4055	4055		62.107	0	1	763170	+		68811	19413	48275	48354	74783	74783					0.10125693777035849
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.3347778320312	2	548.33529	1094.65603	-1.7288	-0.00094794	1.0269	0.00056308	-0.70187	-0.00038486	548.3357848818079	29.551	0.67551	29.551	29.26	29.936	0					49	16	4	0	0	0	0.12914	1	1820	1820		104.06	15.88	1	1503200			68812	2295	48276	48355	74784	74784					0.11248515871170639
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.3350219726562	2	548.33529	1094.65603	-1.0935	-0.00059962	0.54682	0.00029984	-0.54671	-0.00029978	548.335472717585	29.51	0.83671	29.513	29.24	30.076	0.0031357					57	20	4	0	0	0	0.16638	2	1799	1799;1808		95.815	28.44	1	1376400			68813	2295	48276	48355	74785;74786	74785					0.11248515871170639
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3350219726562	2	548.33529	1094.65603	-1.167	-0.00063989	0.55068	0.00030196	-0.61628	-0.00033793	548.3355173007352	29.314	0.87937	29.392	29.128	30.007	0.078346					56	21	4	0	0	0	0.22902	1	1752	1752		85.161	7.8432	1	1264600			68814	2295	48276	48355	74787	74787					0.11248515871170639
RPTDSGPSNC	10	Unmodified	_RPTDSGPSNC_					0	0	0			REV__ENSG00000197213|ENST00000586855|ZSCAN5B	REV__ENSG00000197213|ENST00000586855|ZSCAN5B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2210693359375	2	517.222005	1032.42946	-1.1907	-0.00061585	-1.0162	-0.0005256	-2.2069	-0.0011415	517.2214001797753	36.291	1.0405	36.291	35.886	36.927	0					90	28	5	0	0	0	1.0236	2	2887	2874;2887		42.864	0.78304	1	6143400	+		68815	28277	48277	48356	74788;74789	74789					-0.08546015750061997
RPTFKFRK	8	Unmodified	_RPTFKFRK_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|22|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|22|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|22|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3267211914062	2	540.327268	1078.63998	-0.69538	-0.00037573	-0.22337	-0.00012069	-0.91875	-0.00049642	540.3270259583758	49.113	0.85931	48.833	48.538	49.397	-0.27977					72	22	5	0	0	0	0.85395	1	4918	4918		54.776	7.119	1	3357000			68816	17876	48278	48357	74790	74790					0.10380854424920472
RPTFRQMQL	9	Oxidation (M)	_RPTFRQM(Oxidation (M))QL_		RPTFRQM(1)QL		RPTFRQM(48)QL	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant;FLNA|p.G295Afs*4|1|0.66|ENSG00000196924|chrX:154366837-154366837|T/-|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	596.8162841796875	2	596.816407	1191.61826	-1.7805	-0.0010626	1.83	0.0010922	0.049568	2.9583E-05	596.8173975052267	34.503	1.1376	34.503	34.168	35.306	0					76	29	4	0	0	0	0.67687	1	2589	2589		47.657	11.211	1	2670000			68817	9935;4979	48279	48358	74791	74791		204			0.03011681614043482
RPTFRQMQL	9	Oxidation (M)	_RPTFRQM(Oxidation (M))QL_		RPTFRQM(1)QL		RPTFRQM(53)QL	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;FLNA|p.Q387Kfs*33|1|0.38|ENSG00000196924|chrX:154366377-154366377|G/-|frameshift_variant;FLNA|p.G295Afs*4|1|0.66|ENSG00000196924|chrX:154366837-154366837|T/-|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000136068|O75369-6|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.81640625	2	596.816407	1191.61826	-1.3285	-0.00079289	1.4626	0.00087291	0.13409	8.0025E-05	596.8171074472955	34.379	1.0552	34.429	33.965	35.02	0.050255					78	26	4	0	0	0	0.5973	1	2504	2504		52.937	7.9145	1	2385800			68818	9935;4979	48279	48358	74792	74792		204			0.03011681614043482
RPTGRLST	8	Unmodified	_RPTGRLST_					0	0	0		nc|ENSG00000165801|Q8TER5-3|ARHGEF40;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.24542236328125	2	444.256508	886.498464	-0.12287	-5.4585E-05	1.5107	0.00067116	1.3879	0.00061658	444.2553798997277	102.87	0.2049	102.74	102.59	102.79	-0.12783					8	4	3	0	0	0	0.027866	1	12798	12798		38.806	0	1	112260			68819	18469	48280	48359	74793	74793					0.050674363318080395
RPTGVSFAFG	10	Unmodified	_RPTGVSFAFG_					0	0	0		nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;ENST00000482456.6_1_10:102259886-102268850:-|nuORF;nc|ENSG00000075826|Q9NQW1-4|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	nc|ENSG00000075826|Q9NQW1-5|SEC31B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7698364257812	2	519.771991	1037.52943	-0.87918	-0.00045697	-3.2871	-0.0017085	-4.1662	-0.0021655	519.7702003162935	22.128	0.70599	22.128	21.819	22.525	0					25	14	2	0	0	0	0.941	1	750	750		51.335	1.8939	1	566420			68820	1571	48281	48360	74794	74794					0.012165896460601289
RPTGVVVRP	9	Unmodified	_RPTGVVVRP_					0	0	0			REV__ENST00000580843.6_2_17:27043073-27045143:-|nuORF	REV__ENST00000580843.6_2_17:27043073-27045143:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.80352783203125	2	490.803626	979.592698	-1.0566	-0.0005186	0.58221	0.00028575	-0.47443	-0.00023285	490.8039011368712	35.425	0.97058	35.403	35.013	35.984	-0.021767					93	25	5	0	0	0	0.94809	1	2726	2726		29.15	3.6994	1	4431600	+		68821	35524	48282	48361	74795	74795					0.10208575153944821
RPTHLLHPRR	10	Unmodified	_RPTHLLHPRR_					0	0	0			REV__ENSG00000102886|ENST00000406256|GDPD3	REV__ENSG00000102886|ENST00000406256|GDPD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8831787109375	2	641.883804	1281.75306	0.76256	0.00048947	-2.9303	-0.0018809	-2.1678	-0.0013915	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.1211	1	11999	11999		21.686	0.73882	1	3421300	+		68822	21335	48283	48362	74796	74796					0.1234492287080684
RPTHLLHPRR	10	Unmodified	_RPTHLLHPRR_					0	0	0			REV__ENSG00000102886|ENST00000406256|GDPD3	REV__ENSG00000102886|ENST00000406256|GDPD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8820190429688	2	641.883804	1281.75306	-0.70618	-0.00045328	-1.5049	-0.00096595	-2.211	-0.0014192	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.1088	1	11751	11751		31.53	3.4483	1	3453200	+		68823	21335	48283	48362	74797	74797					0.1234492287080684
RPTKPPMV	8	Unmodified	_RPTKPPMV_					0	0	0			REV__ENST00000525036.1_1_13:48877982-48934322:+|nuORF	REV__ENST00000525036.1_1_13:48877982-48934322:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2480773925781	2	463.26803	924.521507	-0.46861	-0.00021709	-3.024	-0.0014009	-3.4926	-0.001618	463.26648027802185	33.829	2.4015	33.829	32.941	35.343	0					160	63	3	0	0	0	0.027866	1	2395	2395		16.473	0	1	1145400	+		68824	34406	48284	48363	74798	74798					0.056227391249194625
RPTLLGPAR	9	Unmodified	_RPTLLGPAR_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.80352783203125	2	490.803626	979.592698	-0.63737	-0.00031282	-0.015559	-7.6362E-06	-0.65293	-0.00032046	490.8036342615088	35.494	1.1527	35.538	35.12	36.273	0.04406					106	30	6	0	0	0	0.72875	1	2676	2676		44.117	6.9577	1	4559600	+		68825	27555	48285	48364	74799	74799					0.10208575153944821
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.82232666015625	2	505.821484	1009.62842	-0.35907	-0.00018162	-1.0746	-0.00054355	-1.4337	-0.00072518	505.8207398713484	42.877	0.50579	42.877	42.569	43.075	0					42	13	4	0	0	0	0.12933	2	3980	3980;4001		104.01	21.773	1	2720800			68826	1183	48286	48365	74800;74801	74800					0.12398612610945747
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.82220458984375	2	505.821484	1009.62842	-0.22888	-0.00011577	-1.171	-0.0005923	-1.3998	-0.00070807	505.82075530920633	43.072	0.50443	42.932	42.595	43.1	-0.13929					33	13	4	0	0	0	0.087669	1	3993	3993		114.89	21.699	1	2614900			68827	1183	48286	48365	74802	74802					0.12398612610945747
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.8219299316406	2	505.821484	1009.62842	0.36118	0.0001827	-1.5591	-0.00078863	-1.1979	-0.00060593	505.82051139034525	42.963	0.54478	42.994	42.646	43.191	0.030827					41	14	4	0	0	0	0.10464	2	3936	3936;3950		109.48	27.238	1	3000300			68828	1183	48286	48365	74803;74804	74803					0.12398612610945747
RPTLVTLPC	9	Unmodified	_RPTLVTLPC_					0	0	0			REV__ENST00000368226.8_1_6:128841525-128841657:-|nuORF	REV__ENST00000368226.8_1_6:128841525-128841657:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.28814697265625	2	500.28642	998.558287	-0.024409	-1.2211E-05	1.9225	0.00096178	1.8981	0.00094957	500.2880362581526	23.812	1.0567	23.888	23.351	24.408	0.076241					66	23	6	0	0	0	0.85329	1	960	960		35.618	2.1027	1	2767700	+		68829	31047	48287	48366	74805	74805					0.058949909508328346
RPTPKGVPA	9	Unmodified	_RPTPKGVPA_					0	0	0		SCYL1|p.E605K|1|0.29|ENSG00000142186|chr11:65536747-65536747|G/A|missense_variant	SCYL1|p.E605K|1|0.29|ENSG00000142186|chr11:65536747-65536747|G/A|missense_variant	SCYL1|p.E605K|1|0.29|ENSG00000142186|chr11:65536747-65536747|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.7589416503906	2	461.777077	921.5396	-0.32352	-0.00014939	1.8874	0.00087158	1.5639	0.00072218	461.77824084962776	30.757	0.33129	30.769	30.668	30.999	0.011797					12	7	2	0	0	0	0.02435	1	1972	1972		51.335	5.3835	1	123170			68830	37865	48288	48367	74806	74806					0.0756919737127646
RPTPKNSL	8	Unmodified	_RPTPKNSL_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4;ENST00000418418.1_1_17:19743579-19743825:+|nuORF;ENST00000513465.1_1_4:43901008-43901365:+|nuORF	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.766357421875	2	456.766709	911.518865	0.01051	4.8005E-06	0.0059377	2.7122E-06	0.016447	7.5127E-06	456.7666501378864	22.281	0.70309	22.281	21.916	22.619	0					31	14	4	0	0	0	0.47665	1	763	763		87.754	26.782	1	708390			68831	1306	48289	48368	74807	74807					0.05956606991605895
RPTPKNSL	8	Unmodified	_RPTPKNSL_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4;ENST00000418418.1_1_17:19743579-19743825:+|nuORF;ENST00000513465.1_1_4:43901008-43901365:+|nuORF	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7662658691406	2	456.766709	911.518865	-0.18333	-8.374E-05	0.26282	0.00012005	0.079493	3.631E-05	456.76677420824933	22.346	0.56832	22.271	21.89	22.458	-0.075296					24	11	3	0	0	0	0.47665	2	770	759;770		87.754	26.782	1	695760			68832	1306	48289	48368	74808;74809	74809					0.05956606991605895
RPTPKNSL	8	Unmodified	_RPTPKNSL_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4;ENST00000418418.1_1_17:19743579-19743825:+|nuORF;ENST00000513465.1_1_4:43901008-43901365:+|nuORF	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7663269042969	2	456.766709	911.518865	-0.87518	-0.00039975	0.78069	0.00035659	-0.09449	-4.316E-05	456.7669952824367	22.181	0.57887	22.255	21.931	22.51	0.073954					25	11	3	0	0	0	0.42327	2	708	708;719		94.006	28.203	1	718600			68833	1306	48289	48368	74810;74811	74810					0.05956606991605895
RPTPSSSSNL	10	Unmodified	_RPTPSSSSNL_					0	0	0			REV__ENST00000467242.1_1_2:30455222-30455939:+|nuORF	REV__ENST00000467242.1_1_2:30455222-30455939:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2673950195312	2	523.26727	1044.51999	-0.63339	-0.00033143	-0.17693	-9.258E-05	-0.81032	-0.00042401	523.267135479827	26.696	0.86243	26.673	26.405	27.267	-0.023088					75	21	4	0	0	0	0.54901	1	1402	1402		82.75	15.257	1	4598700	+		68834	33068	48290	48369	74812	74812					-0.0004922343014186481
RPTQDPSECTK	11	Unmodified	_RPTQDPSECTK_					0	0	0		ENSG00000084453|ENST00000683939|SLCO1A2;nc|ENSG00000084453|P46721-2|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.22802734375	3	421.19956	1260.57685	-0.34883	-0.00014693	0.62377	0.00026273	0.27493	0.0001158	421.1997196133646	26.118	0.70849	26.118	25.823	26.531	0					21	16	2	0	0	0	0.02473	1	1263	1263		11.455	0	1	83395			68835	1769	48291	48370	74813	74813					-0.04301543935957852
RPTQRQKRTKK	11	Unmodified	_RPTQRQKRTKK_					0	0	0			REV__ENSG00000123338|ENST00000293373|NCKAP1L	REV__ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2605895996094	3	476.295297	1425.86406	-0.43722	-0.00020825	2.7449	0.0013074	2.3076	0.0010991	476.2960907730971	28.186	0.43991	27.941	27.801	28.241	-0.24524					23	10	4	0	0	0	0.024865	1	1642	1642		12.433	3.221	1	253580	+		68836	22689	48292	48371	74814	74814					0.16816517788220153
RPTRHPAAAR	10	Unmodified	_RPTRHPAAAR_					0	0	0			REV__ENST00000527986.5_1_10:28813535-28821502:-|nuORF	REV__ENST00000527986.5_1_10:28813535-28821502:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.8270263671875	2	566.825955	1131.63736	-0.80456	-0.00045605	2.7171	0.0015401	1.9125	0.0010841	566.8274004327438	53.04	1.5378	53.04	52.472	54.01	0					110	41	4	0	0	0	0.64538	1	5729	5729		71.877	15.444	1	2859100	+		68837	34484	48293	48372	74815	74815					0.07680399019955075
RPTRHPAAAR	10	Unmodified	_RPTRHPAAAR_					0	0	0			REV__ENST00000527986.5_1_10:28813535-28821502:-|nuORF	REV__ENST00000527986.5_1_10:28813535-28821502:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	566.825955	1131.63736	-0.80456	-0.00045605	2.7171	0.0015401	1.9125	0.0010841	566.8274004327438	53.04	1.5378	53.04	52.472	54.01	0	0.04711	2.7123E-05	NaN	71.877	110	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2859100	+		68838	34484	48293	48372							0.07680399019955075
RPTRHPPT	8	Unmodified	_RPTRHPPT_					0	0	0		ENST00000304808.10_1_11:117015009-117034501:+|nuORF	ENST00000304808.10_1_11:117015009-117034501:+|nuORF	ENST00000304808.10_1_11:117015009-117034501:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2544860839844	2	481.26995	960.525347	0.022242	1.0704E-05	-1.6632	-0.00080044	-1.6409	-0.00078973	481.269092759322	31.016	0.65145	30.775	30.497	31.149	-0.24109					47	15	4	0	0	0	0.027866	1	2008	2008		44.117	0	1	4017500			68839	11980	48294	48373	74816	74816					0.043505449429858345
RPTRPDMDV	9	Unmodified	_RPTRPDMDV_					0	0	0		ENST00000380946.3_1_10:3825413-3827293:-|nuORF	ENST00000380946.3_1_10:3825413-3827293:-|nuORF	ENST00000380946.3_1_10:3825413-3827293:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.7954711914062	2	543.771665	1085.52878	-0.72246	-0.00039285	-2.1843	-0.0011878	-2.9067	-0.0015806	543.7701757771018	40.21	0.55235	40.098	39.83	40.382	-0.11222					23	14	3	0	0	0	0.024292	1	3489	3489		68.787	24.67	1	217770			68840	13326	48295	48374	74817	74817					-0.010565730653297578
RPTSAPDVT	9	Unmodified	_RPTSAPDVT_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.26171875	2	472.245806	942.47706	0.39276	0.00018548	-1.3104	-0.00061881	-0.9176	-0.00043333	472.24627761135434	26.148	0.16065	26.229	26.171	26.331	0.081293					5	3	2	0	0	0	0.024427	1	1258	1258		34.173	5.023	1	32541			68841	2136	48296	48375	74818	74818					0.0035200651241211744
RPTSKRDSL	9	Unmodified	_RPTSKRDSL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2987670898438	2	530.298904	1058.58326	2.5602	0.0013577	-3.4263	-0.001817	-0.86606	-0.00045927	530.2971861809157	18.015	1.4728	18.015	17.548	19.021	0					66	29	5	0	0	0	0.20652	2	251	228;251		88.177	23.754	1	4024600			68842	1037	48297	48376	74819;74820	74820					0.05630762077748841
RPTSKRDSL	9	Unmodified	_RPTSKRDSL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2987060546875	2	530.298904	1058.58326	-0.079339	-4.2073E-05	-0.62771	-0.00033288	-0.70705	-0.00037495	530.2986568771888	18.213	1.3273	18.081	17.663	18.99	-0.13148					65	26	5	0	0	0	0.15366	3	242	242;253;265		98.629	24.374	1	3857200			68843	1037	48297	48376	74821;74822;74823	74821					0.05630762077748841
RPTSLKFHWLI	11	Unmodified	_RPTSLKFHWLI_					0	0	0			REV__ENST00000581471.2_1_18:5239176-5239272:+|nuORF	REV__ENST00000581471.2_1_18:5239176-5239272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.60797119140625	3	466.60659	1396.79794	0.67563	0.00031525	2.4993	0.0011662	3.175	0.0014815	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0327	1	12490	12490		29.551	11.718	1	1258700	+		68844	35533	48298	48377	74824	74824					0.11541308893515634
RPTSPKSDKGN	11	Unmodified	_RPTSPKSDKGN_					0	0	0			REV__ENST00000412580.1_1_2:122466160-122466664:-|nuORF	REV__ENST00000412580.1_1_2:122466160-122466664:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	593.80859375	2	593.812376	1185.6102	-2.0367	-0.0012094	-3.9581	-0.0023504	-5.9948	-0.0035598	593.8101463873134	21.58	0.86597	21.58	21.146	22.012	0					65	17	5	0	0	0	0.97516	1	722	722		42.338	3.0852	1	3271200	+		68845	32002	48299	48378	74825	74825					0.024818258982804764
RPTSTPFLC	9	Unmodified	_RPTSTPFLC_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.795654296875	2	511.260402	1020.50625	-0.89606	-0.00045812	4.1222	0.0021075	3.2262	0.0016494	511.2626547688586	21.652	0.96254	21.652	21.097	22.06	0					31	19	3	0	0	0	0.024405	1	727	727		27.882	2.3082	1	240950	+		68846	20427	48300	48379	74826	74826					-0.003181724629484961
RPTSTPFLC	9	Unmodified	_RPTSTPFLC_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.260402	1020.50625	-0.45514	-0.0002327	4.1765	0.0021353	3.7214	0.0019026	511.26241119932433	21.727	0.76626	21.637	21.158	21.924	-0.090094	-0.041365	-3.9723E-05	NaN	27.882	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198700	+		68847	20427	48300	48379							-0.003181724629484961
RPTTEQEP	8	Unmodified	_RPTTEQEP_					0	0	0			REV__ENSG00000088367|ENST00000338074|EPB41L1	REV__ENSG00000088367|ENST00000338074|EPB41L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2635803222656	2	479.235439	956.456324	-1.253	-0.00060046	0.96747	0.00046365	-0.28548	-0.00013681	479.23537777627257	38.711	0.34789	38.739	38.612	38.96	0.027275					14	8	2	0	0	0	0.027866	1	3245	3245		24.203	0	1	94249	+		68848	20813	48301	48380	74827	74827					-0.02364583867233705
RPTTEQEP	8	Unmodified	_RPTTEQEP_					0	0	0			REV__ENSG00000088367|ENST00000338074|EPB41L1	REV__ENSG00000088367|ENST00000338074|EPB41L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.235439	956.456324	-0.27322	-0.00013094	-0.033155	-1.5889E-05	-0.30638	-0.00014683	479.23520511688594	38.563	0.39542	38.563	38.284	38.68	0	-0.032157	-0.00030036	NaN	24.203	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70970	+		68849	20813	48301	48380							-0.02364583867233705
RPTTEQEP	8	Unmodified	_RPTTEQEP_					0	0	0			REV__ENSG00000088367|ENST00000338074|EPB41L1	REV__ENSG00000088367|ENST00000338074|EPB41L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.235439	956.456324	-0.29986	-0.0001437	0.22671	0.00010865	-0.073146	-3.5054E-05	479.23558650305654	38.566	0.27482	38.484	38.294	38.569	-0.082512	-0.11132	-5.1282E-05	NaN	24.203	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70774	+		68850	20813	48301	48380							-0.02364583867233705
RPTTGNTL	8	Unmodified	_RPTTGNTL_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.2358703613281	2	430.235242	858.45593	-0.72705	-0.0003128	1.3579	0.00058421	0.63082	0.0002714	430.23590934710137	25.19	1.0824	25.19	24.83	25.912	0					99	25	7	0	0	0	0.27916	5	1152	1152;1163;1176;1188;1202		120.87	35.509	1	10507000			68851	2852	48302	48381	74828;74829;74830;74831;74832	74828					0.021040412035858935
RPTTGNTL	8	Unmodified	_RPTTGNTL_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.2355041503906	2	430.235242	858.45593	-0.89938	-0.00038694	1.5563	0.00066957	0.65691	0.00028263	430.23597570473396	25.215	0.82231	25.181	24.86	25.682	-0.034395					72	19	5	0	0	0	0.27613	5	1153	1141;1153;1165;1178;1191		122.18	33.533	1	9867200			68852	2852	48302	48381	74833;74834;74835;74836;74837	74834					0.021040412035858935
RPTTGNTL	8	Unmodified	_RPTTGNTL_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.2352600097656	2	430.235242	858.45593	0.55637	0.00023937	-0.37815	-0.00016269	0.17821	7.6673E-05	430.23511099848474	24.992	1.0422	25.07	24.455	25.497	0.078358					61	23	4	0	0	0	0.26388	3	1084	1073;1084;1097		127.46	36.685	1	4998100			68853	2852	48302	48381	74838;74839;74840	74839					0.021040412035858935
RPTTVPAPR	9	Unmodified	_RPTTVPAPR_					0	0	0		ENST00000584445.5_1_17:80438345-80438627:+|nuORF	ENST00000584445.5_1_17:80438345-80438627:+|nuORF	ENST00000584445.5_1_17:80438345-80438627:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2689514160156	2	497.793258	993.571963	-1.1595	-0.00057717	-1.9992	-0.00099518	-3.1586	-0.0015724	497.7918303538874	36.137	0.20531	36.094	35.931	36.136	-0.042458					6	5	2	0	0	0	0.024288	1	2829	2829		71.877	3.0906	1	41216			68854	17205	48303	48382	74841	74841					0.07491984774276261
RPTYPITQPK	10	Unmodified	_RPTYPITQPK_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	REV__nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	401.871337890625	3	400.896029	1199.66626	0.20755	8.3208E-05	-4.0899	-0.0016396	-3.8824	-0.0015564	400.89413145794316	30.882	0.1254	30.893	30.831	30.956	0.011797					4	2	2	0	0	0	0.03519	1	2002	2002		19.263	0	1	146810	+		68855	22439	48304	48383	74842	74842					0.07441078805732104
RPVAAACQI	9	Unmodified	_RPVAAACQI_					0	0	0			REV__nc|ENSG00000077514|Q15054-3|POLD3	REV__nc|ENSG00000077514|Q15054-3|POLD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2378845214844	2	464.755287	927.496021	-0.40076	-0.00018626	-0.23187	-0.00010776	-0.63263	-0.00029402	464.75531620684757	29.897	0.77497	29.975	29.607	30.382	0.078344					25	18	2	0	0	0	0.024506	1	1810	1810		30.504	7.4612	1	208300	+		68856	20593	48305	48384	74843	74843					0.02937264602473988
RPVAAACQI	9	Unmodified	_RPVAAACQI_					0	0	0			REV__nc|ENSG00000077514|Q15054-3|POLD3	REV__nc|ENSG00000077514|Q15054-3|POLD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.755287	927.496021	-0.74949	-0.00034833	0.27573	0.00012815	-0.47376	-0.00022018	464.75525763252784	30.212	0.67057	30.034	29.612	30.283	-0.17818	-0.006614	0.00045538	NaN	6.3127	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185040	+		68857	20593	48305	48384							0.02937264602473988
RPVAPSGTAL	10	Unmodified	_RPVAPSGTAL_					0	0	0		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7795104980469	2	484.779816	967.545079	-0.64244	-0.00031144	-0.4186	-0.00020293	-1.061	-0.00051437	484.7795833142868	38.801	0.73925	38.801	38.515	39.254	0					48	19	4	0	0	0	0.56936	1	3267	3267		80.455	1.0036	1	4830800			68858	18248	48306	48385	74844	74844					0.06000876163091107
RPVAPSGTAL	10	Unmodified	_RPVAPSGTAL_					0	0	0		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7794494628906	2	484.779816	967.545079	-0.55184	-0.00026752	-0.48793	-0.00023654	-1.0398	-0.00050406	484.77954223867596	38.783	1.0132	38.684	38.398	39.411	-0.098755					57	27	3	0	0	0	0.54901	1	3267	3267		82.75	13.964	1	5665000			68859	18248	48306	48385	74845	74845					0.06000876163091107
RPVAPSGTAL	10	Unmodified	_RPVAPSGTAL_					0	0	0		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.779052734375	2	484.779816	967.545079	-1.3933	-0.00067547	0.22353	0.00010837	-1.1698	-0.0005671	484.7798639632356	38.977	0.83774	39.001	38.688	39.526	0.023727					53	22	3	0	0	0	0.61732	1	3271	3271		75.043	0.78827	1	5065100			68860	18248	48306	48385	74846	74846					0.06000876163091107
RPVAQDVAL	9	Unmodified	_RPVAQDVAL_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.77911376953125	2	484.779816	967.545079	-0.55184	-0.00026752	-0.48793	-0.00023654	-1.0398	-0.00050406	484.77954223867596	38.783	1.0132	38.684	38.398	39.411	-0.098755					57	27	3	0	0	0	0.28753	1	3279	3279		77.318	8.5308	1	5665000			68861	7752	48307	48386	74847	74847					0.06000876163091107
RPVAWTSP	8	Unmodified	_RPVAWTSP_					0	0	0		ENST00000382788.7_1_4:3433589-3433751:+|nuORF	ENST00000382788.7_1_4:3433589-3433751:+|nuORF	ENST00000382788.7_1_4:3433589-3433751:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.2692565917969	2	457.248152	912.481751	-0.22292	-0.00010193	-4.2	-0.0019204	-4.4229	-0.0020224	457.24504526261205	27.923	0.19836	27.771	27.61	27.808	-0.15195					6	4	2	0	0	0	0.027866	1	1559	1559		19.36	7.849	1	16277			68862	13363	48308	48387	74848	74848					0.022009354458418784
RPVEFEATT	9	Unmodified	_RPVEFEATT_					0	0	0			REV__ENSG00000066056|ENST00000372476|TIE1	REV__ENSG00000066056|ENST00000372476|TIE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2360229492188	2	525.266739	1048.51892	0.56525	0.00029691	-0.44282	-0.0002326	0.12243	6.4308E-05	525.2658156832028	25.454	1.4996	25.283	23.993	25.492	-0.17151					43	34	2	0	0	0	0.024523	1	1175	1175		37.159	12.956	1	94254	+		68863	20329	48309	48388	74849	74849					-0.00339437799038933
RPVEPDSRA	9	Unmodified	_RPVEPDSRA_					0	0	0			REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF	REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8004760742188	2	513.76998	1025.52541	-0.69201	-0.00035553	0.80544	0.00041381	0.11343	5.8278E-05	513.7704978127088	30.884	0.70299	30.959	30.708	31.411	0.074316					43	16	4	0	0	0	0.024367	1	2024	2024		44.377	12.422	1	1188500	+		68864	35706	48310	48389	74850	74850					0.013665001523349929
RPVEPDSRA	9	Unmodified	_RPVEPDSRA_					0	0	0			REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF	REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	513.76998	1025.52541	-0.97342	-0.00050011	0.87784	0.00045101	-0.095582	-4.9107E-05	513.7703068466649	31.279	0.54621	31.279	31.003	31.549	0	0.13725	0.00050704	NaN	44.377	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1328500	+		68865	35706	48310	48389							0.013665001523349929
RPVFSKMA	8	Unmodified	_RPVFSKMA_					0	0	0		nc|ENSG00000134184|P09488-2|GSTM1;ENSG00000134184|ENST00000309851|GSTM1	nc|ENSG00000134184|P09488-2|GSTM1	nc|ENSG00000134184|P09488-2|GSTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2602233886719	2	468.260205	934.505857	-0.06347	-2.972E-05	-0.0032874	-1.5393E-06	-0.066757	-3.126E-05	468.25999753809316	22.935	1.36	23.009	22.03	23.39	0.073954					77	29	3	0	0	0	0.89627	1	764	764		51.335	6.8044	1	517170			68866	4761	48311	48390	74851	74851					0.03598452607877789
RPVFSKMA	8	Unmodified	_RPVFSKMA_					0	0	0		nc|ENSG00000134184|P09488-2|GSTM1;ENSG00000134184|ENST00000309851|GSTM1	nc|ENSG00000134184|P09488-2|GSTM1	nc|ENSG00000134184|P09488-2|GSTM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	468.260205	934.505857	-0.28871	-0.00013519	0.1971	9.2296E-05	-0.091603	-4.2894E-05	468.2601513265398	23.093	1.3865	23.093	22.012	23.399	0	0.060544	8.7594E-05	NaN	51.335	72	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460820			68867	4761	48311	48390							0.03598452607877789
RPVFSKMA	8	Unmodified	_RPVFSKMA_					0	0	0		nc|ENSG00000134184|P09488-2|GSTM1;ENSG00000134184|ENST00000309851|GSTM1	nc|ENSG00000134184|P09488-2|GSTM1	nc|ENSG00000134184|P09488-2|GSTM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	468.260205	934.505857	-0.14754	-6.9088E-05	0.090063	4.2173E-05	-0.057479	-2.6915E-05	468.2600895999983	23.056	1.2897	22.995	22.097	23.386	-0.06086	-0.037049	-1.2653E-05	NaN	51.335	71	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507970			68868	4761	48311	48390							0.03598452607877789
RPVGALPCV	9	Unmodified	_RPVGALPCV_					0	0	0		ENST00000382952.7_2_4:1205816-1205999:-|nuORF	ENST00000382952.7_2_4:1205816-1205999:-|nuORF	ENST00000382952.7_2_4:1205816-1205999:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.26165771484375	2	456.260205	910.505857	2.3598	0.0010767	1.6315	0.00074439	3.9913	0.0018211	456.260877513281	18.767	0.73769	18.767	18.48	19.218	0					41	14	4	0	0	0	0.75282	1	343	343		42.474	14.22	1	815010			68869	13364	48312	48391	74852	74852					0.04702452607864416
RPVGAVQPSH	10	Unmodified	_RPVGAVQPSH_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2862548828125	2	524.28834	1046.56213	-0.71823	-0.00037656	-0.61258	-0.00032117	-1.3308	-0.00069773	524.2883013690289	28.489	1.1564	28.485	27.929	29.085	-0.0042019					84	27	6	0	0	0	1.0719	1	1637	1637		36.447	0	1	2638900	+		68870	20125	48313	48392	74853	74853					0.04070796768905893
RPVGPGRAL	9	Unmodified	_RPVGPGRAL_					0	0	0		NOL9-DNAJC11|1|fusion;NOL9-DNAJC11|2|fusion;ENST00000464665.1_1_1:6609704-6614547:-|nuORF;ENSG00000162408|ENST00000377705|NOL9	NOL9-DNAJC11|1|fusion	NOL9-DNAJC11|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7825012207031	2	461.782693	921.550834	-0.52435	-0.00024214	0.68593	0.00031675	0.16158	7.4616E-05	461.7828538488393	27.704	1.2039	27.704	27.286	28.49	0					69	30	4	0	0	0	0.55828	2	1538	1527;1538		55.504	5.4797	1	1156900			68871	18881	48314	48393	74854;74855	74855					0.08692019465422618
RPVGPGRAL	9	Unmodified	_RPVGPGRAL_					0	0	0		NOL9-DNAJC11|1|fusion;NOL9-DNAJC11|2|fusion;ENST00000464665.1_1_1:6609704-6614547:-|nuORF;ENSG00000162408|ENST00000377705|NOL9	NOL9-DNAJC11|1|fusion	NOL9-DNAJC11|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.78289794921875	2	461.782693	921.550834	-0.35111	-0.00016214	0.52574	0.00024278	0.17463	8.0639E-05	461.78278579447885	27.646	1.1161	27.633	27.205	28.321	-0.012981					70	28	4	0	0	0	0.43973	1	1522	1522		63.306	18.775	1	1182600			68872	18881	48314	48393	74856	74856					0.08692019465422618
RPVGPGRAL	9	Unmodified	_RPVGPGRAL_					0	0	0		NOL9-DNAJC11|1|fusion;NOL9-DNAJC11|2|fusion;ENST00000464665.1_1_1:6609704-6614547:-|nuORF;ENSG00000162408|ENST00000377705|NOL9	NOL9-DNAJC11|1|fusion	NOL9-DNAJC11|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7823791503906	2	461.782693	921.550834	-0.2705	-0.00012491	0.37844	0.00017476	0.10794	4.9846E-05	461.7827015455155	27.473	0.99638	27.554	27.171	28.168	0.081293					63	25	4	0	0	0	0.4752	1	1454	1454		60.972	3.1607	1	1288800			68873	18881	48314	48393	74857	74857					0.08692019465422618
RPVGPSSVL	9	Unmodified	_RPVGPSSVL_					0	0	0			REV__ENST00000307533.10_1_4:6675805-6675937:+|nuORF	REV__ENST00000307533.10_1_4:6675805-6675937:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2750244140625	2	456.269084	910.523616	-0.28278	-0.00012902	1.6957	0.00077368	1.4129	0.00064466	456.27037668042	27.792	1.7927	27.788	27.214	29.006	-0.0042782					118	44	5	0	0	0	0.43973	1	1496	1496		63.306	4.5243	1	12699000	+		68874	30137	48315	48394	74858	74858					0.06477491134376123
RPVGSIPLWLQ	11	Unmodified	_RPVGSIPLWLQ_					0	0	0		nc|ENSG00000188992|Q6XZB0-7|LIPI;nc|ENSG00000188992|Q6XZB0-6|LIPI;nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-5|LIPI;nc|ENSG00000188992|Q6XZB0-3|LIPI;ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-2|LIPI	nc|ENSG00000188992|Q6XZB0-7|LIPI	nc|ENSG00000188992|Q6XZB0-7|LIPI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3707885742188	2	633.371872	1264.72919	-0.4938	-0.00031276	-4.0259	-0.0025499	-4.5197	-0.0028627	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.98904	1	11996	11996		39.253	0.49923	1	9845500			68875	9773	48316	48395	74859	74859					0.10741644593804267
RPVGTLTAP	9	Unmodified	_RPVGTLTAP_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2739562988281	2	456.269084	910.523616	-0.28278	-0.00012902	1.6957	0.00077368	1.4129	0.00064466	456.27037668042	27.792	1.7927	27.788	27.214	29.006	-0.0042782					118	44	5	0	0	0	0.70186	1	1521	1521		45.952	1.8352	1	12699000	+		68876	19804	48317	48396	74860	74860					0.06477491134364755
RPVHLRPTGG	10	Unmodified	_RPVHLRPTGG_					0	0	0		SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3167724609375	2	545.317432	1088.62031	-0.30292	-0.00016519	-1.1181	-0.00060972	-1.421	-0.00077491	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.1286	1	10860	10860		25.574	1.3713	1	17068000			68877	37863	48318	48397	74861	74861					0.07954478414171717
RPVIPPQAM	9	Unmodified	_RPVIPPQAM_					0	0	0			REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7881774902344	2	504.786587	1007.55862	-0.57729	-0.00029141	3.8952	0.0019663	3.3179	0.0016748	504.78843788166563	20.598	0.76853	20.494	20.079	20.848	-0.10477					40	15	4	0	0	0	0.40179	1	550	550		65.803	4.8312	1	624720	+		68878	21108	48319	48398	74862	74862					0.05514410670673442
RPVIPPQAM	9	Unmodified	_RPVIPPQAM_					0	0	0			REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	REV__EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7883605957031	2	504.786587	1007.55862	1.2077	0.00060963	2.7185	0.0013723	3.9262	0.0019819	504.7878132032006	20.42	0.88666	20.489	20.119	21.005	0.068901					40	17	4	0	0	0	0.59099	1	491	491		53.351	7.3995	1	386570	+		68879	21108	48319	48398	74863	74863					0.05514410670673442
RPVIRGGT	8	Unmodified	_RPVIRGGT_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF;REV__ENSG00000150753|ENST00000280326|CCT5	REV__ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2618713378906	2	428.261594	854.508634	-0.55429	-0.00023738	0.94817	0.00040607	0.39388	0.00016869	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0574	1	11047	11047		24.203	0	1	83817000	+		68880	24734;32223	48320	48399	74864	74864					0.07556044057048439
RPVISQTPLV	10	Unmodified	_RPVISQTPLV_					0	0	0			REV__ENSG00000084092|ENST00000264230|NOA1	REV__ENSG00000084092|ENST00000264230|NOA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.3150024414062	2	555.337498	1108.66044	-0.30512	-0.00016944	4.0546	0.0022517	3.7495	0.0020822	555.3396008196781	67.63	0.38467	67.392	67.245	67.629	-0.23814					11	8	2	0	0	0	0.03519	1	7806	7806		15.642	1.5047	1	106430	+		68881	20728	48321	48400	74865	74865					0.11045980294079527
RPVKDRLG	8	Unmodified	_RPVKDRLG_					0	0	0		ENSG00000164902|ENST00000297540|PHAX	ENSG00000164902|ENST00000297540|PHAX	ENSG00000164902|ENST00000297540|PHAX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.78790283203125	2	470.787976	939.561398	-0.40234	-0.00018942	-0.52319	-0.00024631	-0.92554	-0.00043573	470.78778156790446	23.768	0.82284	23.707	23.428	24.251	-0.06086					59	18	5	0	0	0	0.99042	1	941	941		38.806	0	1	12702000			68882	7339	48322	48401	74866	74866					0.08920002119850778
RPVKGKMP	8	Unmodified	_RPVKGKMP_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.27508544921875	2	456.776022	911.537492	-0.092125	-4.208E-05	1.1592	0.00052948	1.067	0.0004874	456.77654641365086	27.614	0.4402	27.614	27.286	27.726	0					25	11	3	0	0	0	0.027866	1	1513	1513		28.254	20.564	1	1141700			68883	18412	48323	48402	74867	74867					0.07818445361829163
RPVKKNGT	8	Unmodified	_RPVKKNGT_					0	0	0		ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2745056152344	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	0.97924	1	11379	11379		40.573	10.069	1	55183000			68884	14302	48324	48403	74868	74868					0.08152313228526964
RPVKKNGT	8	Unmodified	_RPVKKNGT_					0	0	0		ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.2743225097656	2	450.274701	898.534849	0.10472	4.7152E-05	-1.1606	-0.00052261	-1.0559	-0.00047546	450.27420091803094	92.333	2.0403	92.192	91.748	93.788	-0.14131					175	47	6	0	0	0	1.0574	1	11328	11328		25.45	1.2474	1	53243000			68885	14302	48324	48403	74869	74869					0.08152313228526964
RPVKKSTE	8	Unmodified	_RPVKKSTE_					0	0	0		ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7786865234375	2	472.779816	943.545079	0.2132	0.0001008	-0.78473	-0.000371	-0.57153	-0.00027021	472.7793418093844	23.68	0.70594	23.757	23.476	24.182	0.076241					28	15	2	0	0	0	0.027866	1	938	938		31.955	0	1	824500			68886	5508	48325	48404	74870	74870					0.07104876163100471
RPVKSILNNKN	11	Unmodified	_RPVKSILNNKN_					0	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.883056640625	2	641.883136	1281.75172	-2.5036	-0.001607	1.2649	0.00081193	-1.2386	-0.00079507	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.0292	1	11591	11591		30.318	3.2704	1	1400600	+		68887	36659	48326	48405	74871	74871					0.12211243991418996
RPVLAGTR	8	Unmodified	_RPVLAGTR_					0	0	0			REV__ENST00000599429.5_1_19:17448434-17449065:+|nuORF	REV__ENST00000599429.5_1_19:17448434-17449065:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.26934814453125	2	435.269419	868.524284	-0.094046	-4.0935E-05	-0.48652	-0.00021177	-0.58056	-0.0002527	435.2692346075311	23.255	1.6602	23.331	22.702	24.362	0.076241					91	37	4	0	0	0	0.96769	1	845	845		42.396	1.618	1	11197000	+		68888	30381	48327	48406	74872	74872					0.08476330574103486
RPVLDKIPA	9	Unmodified	_RPVLDKIPA_					0	0	0			REV__nc|ENSG00000143641|Q10471-2|GALNT2	REV__nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2964172363281	2	504.813659	1007.61277	-0.051118	-2.5805E-05	0.78641	0.00039699	0.73529	0.00037118	504.81352925360454	18.801	0.29221	18.669	18.549	18.841	-0.13147					8	5	2	0	0	0	0.024427	1	331	331		42.396	1.618	1	34308	+		68889	36738	48328	48407	74873	74873					0.10926326093897387
RPVLFPLPV	9	Unmodified	_RPVLFPLPV_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.32568359375	2	519.328945	1036.64334	-0.35073	-0.00018215	-3.7931	-0.0019699	-4.1438	-0.002152	519.3267622473793	51.754	0.58258	51.754	51.466	52.049	0					37	16	3	0	0	0	0.85941	1	5518	5518		35.201	2.3883	1	3678900	+		68890	37247	48329	48408	74874	74874					0.12648104478921596
RPVLRVSAGP	10	Unmodified	_RPVLRVSAGP_					0	0	0		ENST00000356534.7_1_3:184099099-184099356:+|nuORF	ENST00000356534.7_1_3:184099099-184099356:+|nuORF	ENST00000356534.7_1_3:184099099-184099356:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.311767578125	2	526.322183	1050.62981	-1.0103	-0.00053174	0.62803	0.00033055	-0.38226	-0.00020119	526.3222747776452	36.551	0.9034	36.551	36.063	36.966	0					59	24	3	0	0	0	0.03519	1	2969	2969		32.812	7.2384	1	464900			68891	12671	48330	48409	74875	74875					0.10652246699692114
RPVLTKVG	8	Unmodified	_RPVLTKVG_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.26934814453125	2	435.281995	868.549437	-0.10363	-4.5108E-05	3.3567	0.0014611	3.2531	0.001416	435.283647373357	23.244	0.36254	23.32	23.156	23.518	0.076241					12	8	2	0	0	0	0.027866	1	845	845		44.117	3.5442	1	86666			68892	7259	48331	48410	74876	74876					0.10990385376669565
RPVLWVGVS	9	Unmodified	_RPVLWVGVS_					0	0	0		ENST00000571644.1_1_16:31374636-31388147:+|nuORF;ENSG00000140678|ENST00000268296|ITGAX	ENST00000571644.1_1_16:31374636-31388147:+|nuORF	ENST00000571644.1_1_16:31374636-31388147:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.26678466796875	2	506.800552	1011.58655	-0.038511	-1.9517E-05	-1.0064	-0.00051006	-1.0449	-0.00052958	506.8003947565042	53.333	0.89647	53.206	52.833	53.73	-0.12706					58	24	4	0	0	0	0.024477	1	5543	5543		27.882	4.8398	1	1319300			68893	17042	48332	48411	74877	74877					0.08122056922422871
RPVNSAAL	8	Unmodified	_RPVNSAAL_					0	0	0		ENST00000474371.1_1_1:32689659-32696621:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.2403564453125	2	414.240327	826.466101	-0.42915	-0.00017777	0.29961	0.00012411	-0.12954	-5.3659E-05	414.2403880218714	30.206	1.0244	30.206	29.692	30.717	0					74	24	5	0	0	0	0.89627	1	1926	1926		51.335	0	1	4517700			68894	1771	48333	48412	74878	74878					0.045926489288035555
RPVPFFWF	8	Unmodified	_RPVPFFWF_					0	0	0		ENST00000548058.5_2_12:81648846-81648915:+|nuORF	ENST00000548058.5_2_12:81648846-81648915:+|nuORF	ENST00000548058.5_2_12:81648846-81648915:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2952270507812	2	548.292362	1094.57017	1.3792	0.00075621	3.7526	0.0020575	5.1318	0.0028137	548.2945708902448	19.755	1.8583	19.821	19.538	21.396	0.066195					101	37	5	0	0	0	0.98906	1	418	418		39.021	3.4032	1	5896600			68895	16543	48334	48413	74879	74879					0.026669757563240637
RPVPLRTTVQT	11	Unmodified	_RPVPLRTTVQT_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.3760986328125	2	634.377686	1266.74082	0.84136	0.00053374	-2.0534	-0.0013026	-1.212	-0.00076886	634.3762285727594	110.55	0.44147	110.54	110.34	110.78	-0.011299					33	15	3	0	0	0	1.0521	1	13957	13957		24.519	0	1	6812000	+		68896	26589	48335	48414	74880	74880					0.11811841617122809
RPVPLRTTVQT	11	Unmodified	_RPVPLRTTVQT_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.3756713867188	2	634.377686	1266.74082	-0.92735	-0.00058829	-0.67786	-0.00043002	-1.6052	-0.0010183	634.3771743485321	110.71	0.50396	110.59	110.51	111.02	-0.12524					33	17	2	0	0	0	1.0592	1	13609	13609		22.58	0	1	4299400	+		68897	26589	48335	48414	74881	74881					0.11811841617122809
RPVQIIWRMN	10	Unmodified	_RPVQIIWRMN_					0	0	0			REV__ENST00000534047.5_1_11:10503676-10517278:+|nuORF	REV__ENST00000534047.5_1_11:10503676-10517278:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.2457580566406	3	438.248408	1311.72339	-0.5257	-0.00023039	-3.1944	-0.0014	-3.7201	-0.0016303	438.2468703737847	28.067	2.8505	28.067	27.286	30.137	0					179	71	5	0	0	0	1.1314	1	1621	1621		27.047	0.29761	1	2868100	+		68898	23397	48336	48415	74882	74882					0.080002228104604
RPVQLAPGSL	10	Unmodified	_RPVQLAPGSL_					0	0	0		nc|ENSG00000165730|Q6ZVD7-3|STOX1;nc|ENSG00000165730|Q6ZVD7-2|STOX1;ENSG00000165730|ENST00000298596|STOX1	nc|ENSG00000165730|Q6ZVD7-3|STOX1	nc|ENSG00000165730|Q6ZVD7-3|STOX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.3084716796875	2	519.308741	1036.60293	-0.20804	-0.00010804	-0.65153	-0.00033835	-0.85957	-0.00044638	519.3083193963904	49.076	0.93576	49.076	48.795	49.731	0					66	25	4	0	0	0	0.50466	1	5081	5081		87.754	0	1	7141900			68899	7459	48337	48416	74883	74883					0.08609138088513646
RPVRAESDGL	10	Unmodified	_RPVRAESDGL_					0	0	0		ENST00000428151.1_1_1:38513104-38568092:+|nuORF;ENST00000432922.5_1_1:38513014-38569262:+|nuORF	ENST00000428151.1_1_1:38513104-38568092:+|nuORF	ENST00000428151.1_1_1:38513104-38568092:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2982788085938	2	550.296362	1098.57817	-0.463	-0.00025479	3.223	0.0017736	2.76	0.0015188	550.2984425793329	54.696	0.77696	54.55	54.245	55.022	-0.14609					61	20	5	0	0	0	0.91678	1	5814	5814		52.937	4.9772	1	8227900			68900	14125	48338	48417	74884	74884					0.03282458215130646
RPVRLQPAR	9	Unmodified	_RPVRLQPAR_					0	0	0			REV__ENST00000559551.5_1_14:24740317-24740742:-|nuORF	REV__ENST00000559551.5_1_14:24740317-24740742:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.841552734375	2	546.841074	1091.66759	-0.54263	-0.00029673	-1.1703	-0.00063995	-1.7129	-0.00093669	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	0.85329	1	12764	12764		35.618	0	1	11370000	+		68901	35119	48339	48418	74885	74885					0.12542757685173456
RPVRRGARRG	10	Unmodified	_RPVRRGARRG_					0	0	0		ENST00000334176.3_1_19:33166647-33167097:+|nuORF	ENST00000334176.3_1_19:33166647-33167097:+|nuORF	ENST00000334176.3_1_19:33166647-33167097:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.8663940429688	2	590.865946	1179.71734	-1.6451	-0.00097203	2.3097	0.0013647	0.66457	0.00039267	590.8675248480401	102.24	1.0921	102.24	101.95	103.04	0					85	25	6	0	0	0	1.089	1	13080	13080		34.173	1.3601	1	5963900			68902	12380	48340	48419	74886	74886					0.13466885413822638
RPVRTLLS	8	Unmodified	_RPVRTLLS_					0	0	0		ENST00000373699.5_1_6:36839520-36839613:-|nuORF	ENST00000373699.5_1_6:36839520-36839613:-|nuORF	ENST00000373699.5_1_6:36839520-36839613:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.26171875	2	471.298176	940.581799	0.34869	0.00016433	-2.4245	-0.0011427	-2.0758	-0.00097832	471.29758283521835	26.242	0.2037	26.323	26.21	26.414	0.081293					6	4	2	0	0	0	0.027866	1	1258	1258		42.396	0	1	14720			68903	13088	48341	48420	74887	74887					0.10913172779669367
RPVRVARTE	9	Unmodified	_RPVRVARTE_					0	0	0			REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	REV__ENST00000376723.7_1_2:128848788-128848986:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.3240356445312	2	542.322714	1082.63087	-0.90353	-0.00049	3.8668	0.002097	2.9632	0.001607	542.3247800461584	45.435	1.0526	45.479	45.214	46.267	0.043877					71	30	4	0	0	0	0.6238	1	4369	4369		51.193	5.2407	1	4793200	+		68904	31368	48342	48421	74888	74888					0.09286461068609242
RPVSLRGG	8	Unmodified	_RPVSLRGG_					0	0	0		ENST00000382745.8_1_16:1524866-1525220:-|nuORF	ENST00000382745.8_1_16:1524866-1525220:-|nuORF	ENST00000382745.8_1_16:1524866-1525220:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	421.25390625	2	421.253769	840.492984	0.52374	0.00022063	-0.20362	-8.5774E-05	0.32012	0.00013485	421.25353990257713	83.615	1.1131	83.477	83.081	84.194	-0.1386					55	25	3	0	0	0	1.0574	1	10083	10083		26.796	0	1	568200			68905	13362	48343	48422	74889	74889					0.06635757539993392
RPVSPVAPR	9	Unmodified	_RPVSPVAPR_					0	0	0		ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	ENST00000446816.1_1_2:96874348-96906424:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2699279785156	2	489.795801	977.577048	-1.1484	-0.00056248	-4.1595	-0.0020373	-5.3079	-0.0025998	489.7929603314754	39.18	0.53337	39.204	39.028	39.562	0.023727					21	14	2	0	0	0	0.023239	1	3268	3268		54.776	19.158	1	238260			68906	14460	48344	48423	74890	74890					0.08736288636896461
RPVSYVLAI	9	Unmodified	_RPVSYVLAI_					0	0	0			REV__ENST00000528042.1_1_11:57480099-57505208:+|nuORF	REV__ENST00000528042.1_1_11:57480099-57505208:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3055725097656	2	509.30821	1016.60187	-0.44141	-0.00022481	-3.7161	-0.0018927	-4.1575	-0.0021175	509.30622347701615	91.862	1.4922	91.853	91.451	92.944	-0.0082932					106	35	5	0	0	0	0.4752	1	11578	11578		60.972	8.0352	1	3607500	+		68907	28746	48345	48424	74891	74891					0.09422923719591836
RPVTPAWSL	9	Unmodified	_RPVTPAWSL_					0	0	0			REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF	REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7882080078125	2	513.790184	1025.56581	-0.70019	-0.00035975	-3.4081	-0.001751	-4.1083	-0.0021108	513.7882737281132	24.102	0.83095	24.102	23.822	24.653	0					42	18	3	0	0	0	0.62163	1	1009	1009		51.335	8.9393	1	2006600	+		68908	32646	48346	48425	74892	74892					0.05405466542742943
RPVTPAWSL	9	Unmodified	_RPVTPAWSL_					0	0	0			REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF	REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.787841796875	2	513.790184	1025.56581	-0.37554	-0.00019295	-3.8597	-0.0019831	-4.2353	-0.002176	513.7880598372328	23.983	1.3869	24.059	23.434	24.821	0.076239					62	30	4	0	0	0	0.75397	1	955	955		42.396	1.618	1	1921200	+		68909	32646	48346	48425	74893	74893					0.05405466542742943
RPVVFTHL	8	Unmodified	_RPVVFTHL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.78515625	2	484.787444	967.560336	-0.086737	-4.2049E-05	-4.0927	-0.0019841	-4.1795	-0.0020261	484.7852019998783	24.645	0.72957	24.723	24.23	24.959	0.078344					24	15	2	0	0	0	0.88442	1	1040	1040		52.299	4.6418	1	653120			68910	10510	48347	48426	74894	74894					0.07525787750955715
RPVVFTHL	8	Unmodified	_RPVVFTHL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.787444	967.560336	-0.63728	-0.00030895	-2.8159	-0.0013651	-3.4532	-0.0016741	484.7855869086569	24.694	0.66632	24.694	24.253	24.919	0	-0.013746	0.00060951	NaN	52.299	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675460			68911	10510	48347	48426							0.07525787750955715
RPVVFTHL	8	Unmodified	_RPVVFTHL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.787444	967.560336	-1.3108	-0.00063544	-2.2929	-0.0011116	-3.6037	-0.001747	484.78579759039513	24.754	0.75826	24.707	24.177	24.935	-0.047148	-0.0012409	0.0011166	NaN	52.299	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622670			68912	10510	48347	48426							0.07525787750955715
RPVVKNERLQ	10	Unmodified	_RPVVKNERLQ_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8689575195312	2	619.870028	1237.7255	-0.22332	-0.00013843	-0.49603	-0.00030747	-0.71934	-0.0004459	619.8694138737308	104.71	0.52811	104.71	104.42	104.95	0					38	15	4	0	0	0	1.0393	1	13453	13453		40.778	12.697	1	233400			68913	4432	48348	48427	74895	74895					0.11614974819940471
RPVVRLLTP	9	Unmodified	_RPVVRLLTP_					0	0	0		ENST00000380384.5_1_9:19379789-19380122:-|nuORF	ENST00000380384.5_1_9:19379789-19380122:-|nuORF	ENST00000380384.5_1_9:19379789-19380122:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7771606445312	2	525.842751	1049.67095	-0.38328	-0.00020154	-1.0331	-0.00054325	-1.4164	-0.00074479	525.8420848528416	49.562	0.22082	49.562	49.399	49.62	0					7	5	2	0	0	0	0.024541	1	5128	5128		26.693	3.1702	1	59996			68914	13309	48349	48428	74896	74896					0.1481000773917458
RPVVVPHGK	9	Unmodified	_RPVVVPHGK_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2358703613281	2	494.806168	987.597784	0.69973	0.00034623	-2.4856	-0.0012299	-1.7859	-0.00088368	494.8045953194764	22.712	0.46326	22.51	22.33	22.793	-0.20198					16	9	3	0	0	0	0.024541	1	810	810		12.207	7.5251	1	53845			68915	5029	48350	48429	74897	74897					0.10348879016567025
RPVVVPNI	8	Unmodified	_RPVVVPNI_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.2398376464844	2	447.281995	892.549437	-0.46488	-0.00020793	-4.0449	-0.0018092	-4.5098	-0.0020171	447.2804189235015	54.368	0.20736	54.232	54.119	54.326	-0.13617					9	5	2	0	0	0	0.027866	1	5776	5776		50.025	0	1	69298			68916	7399	48351	48430	74898	74898					0.098863853766602
RPVYPTIYS	9	Unmodified	_RPVYPTIYS_					0	0	0			REV__ENSG00000284526|ENST00000640006|unknown	REV__ENSG00000284526|ENST00000640006|unknown	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2954711914062	2	548.295299	1094.57605	-0.17387	-9.5334E-05	-0.12498	-6.8529E-05	-0.29886	-0.00016386	548.2954263427797	19.621	2.2207	19.621	19.317	21.537	0					119	45	5	0	0	0	0.80658	1	456	456		38.806	0	1	7603900	+		68917	29255	48352	48431	74899	74899					0.032540294773070855
RPWGGPGPPLH	11	Unmodified	_RPWGGPGPPLH_					0	0	0			REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	585.8115234375	2	585.811982	1169.60941	-1.8856	-0.0011046	0.68175	0.00039938	-1.2039	-0.00070524	585.8123976743462	27.787	1.1883	27.787	27.508	28.696	0					76	29	4	0	0	0	0.93615	2	1549	1549;1573		49.442	10.189	1	3912600	+		68918	37656	48353	48432	74900;74901	74900					0.03139076039883548
RPWGGPGPPLH	11	Unmodified	_RPWGGPGPPLH_					0	0	0			REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	585.8113403320312	2	585.811982	1169.60941	-1.5232	-0.00089233	0.47384	0.00027758	-1.0494	-0.00061475	585.8122575291744	27.754	1.1506	27.741	27.464	28.615	-0.012983					88	28	5	0	0	0	0.93615	2	1533	1533;1557		49.442	5.0644	1	4386900	+		68919	37656	48353	48432	74902;74903	74902					0.03139076039883548
RPWGGPGPPLH	11	Unmodified	_RPWGGPGPPLH_					0	0	0			REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	585.8118286132812	2	585.811982	1169.60941	-0.11875	-6.9567E-05	-0.88013	-0.00051559	-0.99889	-0.00058516	585.8114029564722	27.545	0.8968	27.626	27.392	28.289	0.081293					58	22	4	0	0	0	0.782	1	1466	1466		58.782	5.4305	1	4145700	+		68920	37656	48353	48432	74904	74904					0.03139076039883548
RPWGGPGPPLH	11	Unmodified	_RPWGGPGPPLH_					0	0	0			REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	REV__SVA_F_dup5|chr1:21387077-21388677:+|2.1579483716414813|0.0424100511512356|5.67|512.0|36|1|anti-sense	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	585.811982	1169.60941	-1.5232	-0.00089233	0.47384	0.00027758	-1.0494	-0.00061475	585.8122575291744	27.754	1.1506	27.741	27.464	28.615	-0.012983	0.023349	0.00044189	NaN	58.782	88	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4386900	+		68921	37656	48353	48432							0.03139076039883548
RPWLLHTHP	9	Unmodified	_RPWLLHTHP_					0	0	0			REV__VWA7|p.P189T|1|0.34|ENSG00000204396|chr6:31775378-31775378|G/T|missense_variant	REV__VWA7|p.P189T|1|0.34|ENSG00000204396|chr6:31775378-31775378|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.826416015625	2	578.82235	1155.63015	0.70572	0.00040848	4.1798	0.0024194	4.8856	0.0028279	578.824666973538	18.841	0.49243	18.841	18.577	19.07	0					22	9	4	0	0	0	0.98128	1	339	339		24.203	1.1603	1	165950	+		68922	37782	48354	48433	74905	74905					0.05855666419552108
RPWLRPAAL	9	Unmodified	_RPWLRPAAL_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.326904296875	2	540.327268	1078.63998	-0.52598	-0.0002842	-0.39896	-0.00021557	-0.92494	-0.00049977	540.327058419719	48.926	1.186	48.926	48.619	49.805	0					71	32	4	0	0	0	0.55828	1	5017	5017		55.504	2.5675	1	5569200			68923	6918	48355	48434	74906	74906					0.10380854424920472
RPWLRPAAL	9	Unmodified	_RPWLRPAAL_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.3270874023438	2	540.327268	1078.63998	-0.84057	-0.00045418	-0.057112	-3.0859E-05	-0.89768	-0.00048504	540.3272433747118	49.175	1.2036	49.023	48.719	49.922	-0.15277					69	32	4	0	0	0	0.33245	2	5044	5033;5044		71.296	10.324	1	4344200			68924	6918	48355	48434	74907;74908	74908					0.10380854424920472
RPWLRPAAL	9	Unmodified	_RPWLRPAAL_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.3271484375	2	540.327268	1078.63998	-1.6026	-0.00086592	0.72591	0.00039223	-0.87668	-0.0004737	540.3276774346024	48.837	0.87312	48.904	48.622	49.495	0.066795					61	23	4	0	0	0	0.4752	1	4949	4949		60.972	16.855	1	3520300			68925	6918	48355	48434	74909	74909					0.10380854424920472
RPWLRPAAL	9	Unmodified	_RPWLRPAAL_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.3275756835938	2	540.327268	1078.63998	-1.2357	-0.00066771	0.37525	0.00020276	-0.8605	-0.00046495	540.327358091049	48.808	0.86705	48.707	48.358	49.225	-0.1008					64	22	4	0	0	0	0.43973	1	4873	4873		63.306	10.37	1	3163900			68926	6918	48355	48434	74910	74910					0.10380854424920472
RPWLRPAAL	9	Unmodified	_RPWLRPAAL_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3272705078125	2	540.327268	1078.63998	-0.69538	-0.00037573	-0.22337	-0.00012069	-0.91875	-0.00049642	540.3270259583758	49.113	0.85931	48.833	48.538	49.397	-0.27977					72	22	5	0	0	0	0.43973	1	4905	4905		63.306	12.114	1	3357000			68927	6918	48355	48434	74911	74911					0.10380854424920472
RPWLRPAAL	9	Unmodified	_RPWLRPAAL_					0	0	0		ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	ENSG00000162073|ENST00000318782|PAQR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.3267822265625	2	540.327268	1078.63998	-1.1742	-0.00063447	0.23807	0.00012863	-0.93616	-0.00050583	540.3272765834294	48.927	0.89813	48.745	48.446	49.344	-0.18206					65	23	4	0	0	0	0.59099	2	4890	4878;4890		53.351	5.4358	1	3320900			68928	6918	48355	48434	74912;74913	74913					0.10380854424920472
RPWLSSPTGL	10	Unmodified	_RPWLSSPTGL_					0	0	0		ENST00000258411.7_1_2:219745349-219745679:+|nuORF	ENST00000258411.7_1_2:219745349-219745679:+|nuORF	ENST00000258411.7_1_2:219745349-219745679:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.3062744140625	2	557.306198	1112.59784	-0.23451	-0.00013069	-0.17394	-9.6936E-05	-0.40844	-0.00022763	557.3060586293263	61.686	0.71051	61.686	61.334	62.044	0					55	18	4	0	0	0	0.0062945	2	7154	7143;7154		176.44	88.748	1	3941000			68929	11420	48356	48435	74914;74915	74915					0.04604834225892773
RPWLSSPTGL	10	Unmodified	_RPWLSSPTGL_					0	0	0		ENST00000258411.7_1_2:219745349-219745679:+|nuORF	ENST00000258411.7_1_2:219745349-219745679:+|nuORF	ENST00000258411.7_1_2:219745349-219745679:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.3067016601562	2	557.306198	1112.59784	-0.12492	-6.962E-05	-0.243	-0.00013542	-0.36792	-0.00020504	557.3060276474132	61.891	0.70821	61.664	61.375	62.084	-0.22663					53	18	4	0	0	0	0.01976	3	7140	7140;7152;7166		163.15	68.906	1	4051100			68930	11420	48356	48435	74916;74917;74918	74916					0.04604834225892773
RPWLSSPTGL	10	Unmodified	_RPWLSSPTGL_					0	0	0		ENST00000258411.7_1_2:219745349-219745679:+|nuORF	ENST00000258411.7_1_2:219745349-219745679:+|nuORF	ENST00000258411.7_1_2:219745349-219745679:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3067626953125	2	557.306198	1112.59784	0.0075375	4.2007E-06	-0.46598	-0.00025969	-0.45844	-0.00025549	557.305904934894	61.583	0.70603	61.655	61.355	62.061	0.071125					54	18	4	0	0	0	0.0062945	3	7056	7044;7056;7064		176.44	78.235	1	3221700			68931	11420	48356	48435	74919;74920;74921	74920					0.04604834225892773
RPWRGFLAPQ	10	Unmodified	_RPWRGFLAPQ_					0	0	0		ENST00000359878.7_1_2:201374367-201374727:-|nuORF	ENST00000359878.7_1_2:201374367-201374727:-|nuORF	ENST00000359878.7_1_2:201374367-201374727:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.8864440917969	3	409.896363	1226.66726	0.13289	5.4469E-05	2.4475	0.0010032	2.5804	0.0010577	409.89749503970444	34.516	0.61838	34.567	34.292	34.91	0.050251					31	15	3	0	0	0	0.03519	1	2503	2503		30.569	0	1	152490			68932	12750	48357	48436	74922	74922					0.06299337965333507
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.784912109375	2	536.785964	1071.55738	-0.86965	-0.00046681	0.27943	0.00014999	-0.59022	-0.00031682	536.7860684584971	32.193	1.2265	32.193	31.869	33.096	0					79	31	4	0	0	0	0.082191	3	2198	2198;2208;2221		116.9	40.129	1	5007600			68933	10025	48358	48437	74923;74924;74925	74923					0.02445912626126301
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.783935546875	2	536.785964	1071.55738	-0.85593	-0.00045945	0.40167	0.00021561	-0.45426	-0.00024384	536.786159761599	31.982	1.1173	31.994	31.663	32.781	0.011799					83	28	4	0	0	0	0.23085	3	2151	2151;2162;2176		84.916	22.92	1	4311500			68934	10025	48358	48437	74926;74927;74928	74926					0.02445912626126301
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.7850341796875	2	536.785964	1071.55738	-1.0045	-0.00053922	0.63027	0.00033832	-0.37426	-0.0002009	536.7862543530591	31.766	1.169	31.835	31.527	32.696	0.068962					91	29	4	0	0	0	0.23085	3	2099	2087;2099;2113		84.916	30.139	1	3876500			68935	10025	48358	48437	74929;74930;74931	74930					0.02445912626126301
RPWSRWAP	8	Unmodified	_RPWSRWAP_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7694091796875	2	528.280318	1054.54608	-0.51982	-0.00027461	0.29193	0.00015422	-0.2279	-0.00012039	528.2804404420341	40.363	0.48124	40.363	40.176	40.657	0					20	13	2	0	0	0	0.027866	1	3529	3529		35.201	2.3883	1	374880			68936	14964	48359	48438	74932	74932					0.020991353226463616
RPYEPINSI	9	Unmodified	_RPYEPINSI_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.789794921875	2	544.790381	1087.56621	-0.77114	-0.00042011	-0.092088	-5.0169E-05	-0.86323	-0.00047028	544.7903061747	49.499	0.95293	49.348	49.043	49.996	-0.1512					65	25	4	0	0	0	0.030064	3	5084	5084;5096;5109		141.52	36.774	1	5633500			68937	3417	48360	48439	74933;74934;74935	74933					0.025928414719373905
RPYEPINSI	9	Unmodified	_RPYEPINSI_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7901611328125	2	544.790381	1087.56621	-2.1558	-0.0011745	1.5503	0.00084461	-0.60548	-0.00032986	544.791175034852	49.183	0.89036	49.257	48.987	49.877	0.074196					60	23	5	0	0	0	0.048057	3	4998	4998;5009;5023		129.42	42.546	1	6011800			68938	3417	48360	48439	74936;74937;74938	74936					0.025928414719373905
RPYFGEPVC	9	Unmodified	_RPYFGEPVC_					0	0	0		chr6:33409541-33409646|428|21.52|0.95|4.5|+|2|None,KIFC1|2	chr6:33409541-33409646|428|21.52|0.95|4.5|+|2|None,KIFC1|2	chr6:33409541-33409646|428|21.52|0.95|4.5|+|2|None,KIFC1|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7916259765625	2	534.252577	1066.4906	1.9144	0.0010228	1.3212	0.00070586	3.2356	0.0017286	534.2530062330777	19.566	0.43624	19.632	19.438	19.875	0.066195					13	8	2	0	0	0	0.024354	1	414	414		47.916	10.756	1	45419			68939	411	48361	48440	74939	74939					-0.039984589799814785
RPYGNPSAPH	10	Unmodified	_RPYGNPSAPH_					0	0	0			REV__BMP5|p.Y116H|1|0.06|ENSG00000112175|chr6:55874520-55874520|A/G|missense_variant	REV__BMP5|p.Y116H|1|0.06|ENSG00000112175|chr6:55874520-55874520|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2954711914062	2	548.270147	1094.52574	-0.05483	-3.0062E-05	-1.8808	-0.0010312	-1.9356	-0.0010612	548.2697310952747	19.609	0.36765	19.609	19.414	19.782	0					10	7	2	0	0	0	0.03519	1	456	456		66.962	35.328	1	38517	+		68940	19213	48362	48441	74940	74940					-0.01774080127825073
RPYHTTDD	8	Unmodified	_RPYHTTDD_					0	0	0		ENSG00000131149|ENST00000253458|GSE1;nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1	ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.763916015625	2	502.725238	1003.43592	-0.3904	-0.00019626	4.0635	0.0020428	3.6731	0.0018465	502.7271466683305	31.85	0.5188	31.85	31.591	32.109	0					21	12	2	0	0	0	0.027866	1	2149	2149		25.45	0	1	148580			68941	4501	48363	48442	74941	74941					-0.06565754527059653
RPYIPCLS	8	Unmodified	_RPYIPCLS_					0	0	0			REV__ENST00000557199.1_1_12:56742526-56742661:-|nuORF	REV__ENST00000557199.1_1_12:56742526-56742661:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.23614501953125	2	474.752213	947.489873	-0.37755	-0.00017924	-2.508	-0.0011907	-2.8856	-0.0013699	474.75086843526907	29.229	0.82585	29.229	28.947	29.773	0					35	20	2	0	0	0	0.027866	1	1823	1823		28.254	0	1	170980	+		68942	35062	48364	48443	74942	74942					0.014027463709453514
RPYLGVFR	8	Unmodified	_RPYLGVFR_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2973327636719	2	504.292894	1006.57123	2.0822	0.00105	4.0646	0.0020497	6.1468	0.0030998	504.29506486810294	18.553	1.7931	18.553	18.186	19.979	0					92	36	4	0	0	0	0.78609	1	349	349		60.294	0	1	7252400			68943	6206	48365	48444	74943	74943					0.068211901252198
RPYPAILIL	9	Unmodified	_RPYPAILIL_					0	0	0		ENSG00000277893|ENST00000622030|SRD5A2	ENSG00000277893|ENST00000622030|SRD5A2	ENSG00000277893|ENST00000622030|SRD5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.81494140625	2	528.334227	1054.6539	-0.17575	-9.2857E-05	-2.5063	-0.0013242	-2.6821	-0.001417	528.3322335285318	43.96	0.50528	43.997	43.67	44.176	0.0369					27	13	3	0	0	0	0.023954	1	4070	4070		52.299	0	1	414880			68944	11060	48366	48445	74944	74944					0.12876087133372494
RPYQEGTP	8	Unmodified	_RPYQEGTP_					0	0	0		ENSG00000164530|ENST00000373674|PI16;nc|ENSG00000164530|Q6UXB8-2|PI16	ENSG00000164530|ENST00000373674|PI16	ENSG00000164530|ENST00000373674|PI16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.7637939453125	2	474.232699	946.450845	-0.0044222	-2.0972E-06	0.42483	0.00020147	0.42041	0.00019937	474.2327332111827	34.706	0.5083	34.689	34.4	34.909	-0.017841					19	12	2	0	0	0	0.027866	1	2626	2626		51.335	20.832	1	113870			68945	7289	48367	48446	74945	74945					-0.024522626590396612
RPYSNVSNL	9	Unmodified	_RPYSNVSNL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2716674804688	2	525.272355	1048.53016	-0.6537	-0.00034337	-0.065041	-3.4164E-05	-0.71874	-0.00037753	525.2724053983762	39.341	0.87383	39.341	39.041	39.915	0					36	24	2	0	0	0	0.16638	3	3367	3357;3367;3379		95.815	16.103	1	8386800			68946	2157	48368	48447	74946;74947;74948	74947					0.00783384295095857
RPYSNVSNL	9	Unmodified	_RPYSNVSNL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MSMS	OPSCC_39_ClassI_Rep-2	2	525.2722778320312	2	525.272355	1048.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.22	1	39.121	38.621	39.621	-0.098755								0	0	0	0.16821	1	3338	3338		77.318	7.69	1				68947	2157	48368	48447	74949	74949					0.00783384295095857
RPYSNVSNL	9	Unmodified	_RPYSNVSNL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MSMS	OPSCC_39_ClassI_Rep-2	2	525.27197265625	2	525.272355	1048.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.292	1	39.193	38.693	39.693	-0.098755								0	0	0	0.042231	1	3350	3350		112.41	21.634	1				68948	2157	48368	48447	74950	74950					0.00783384295095857
RPYSNVSNL	9	Unmodified	_RPYSNVSNL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.27197265625	2	525.272355	1048.53016	-0.75464	-0.00039639	-0.029846	-1.5677E-05	-0.78448	-0.00041207	525.2727365115217	39.498	1.4384	39.521	38.688	40.126	0.023727					61	39	2	0	0	0	0.086035	2	3336	3336;3348		115.49	22.299	1	7867400			68949	2157	48368	48447	74951;74952	74951					0.00783384295095857
RPYTCEFCNY	10	Unmodified	_RPYTCEFCNY_					0	0	0		ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	ENSG00000170684|ENST00000303809|ZNF296	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.7204284667969	3	432.510969	1294.51108	-0.1516	-6.5568E-05	-3.035	-0.0013127	-3.1866	-0.0013782	432.5095335787388	31.054	0.6587	30.813	30.453	31.112	-0.24109					23	15	2	0	0	0	0.03519	1	1992	1992		20.03	2.1973	1	73698			68950	8069	48369	48448	74953	74953					-0.12439656382457542
RPYTGGKGF	9	Unmodified	_RPYTGGKGF_					0	0	0			REV__ENSG00000169967|ENST00000682094|MAP3K2	REV__ENSG00000169967|ENST00000682094|MAP3K2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7691955566406	2	491.758884	981.503215	-0.91847	-0.00045166	2.1909	0.0010774	1.2725	0.00062574	491.7589444932635	27.508	0.47556	27.59	27.357	27.833	0.081293					20	12	2	0	0	0	0.024405	1	1506	1506		35.618	5.1146	1	181590	+		68951	26422	48370	48449	74954	74954					0.011723204745862859
RPYTGGKGF	9	Unmodified	_RPYTGGKGF_					0	0	0			REV__ENSG00000169967|ENST00000682094|MAP3K2	REV__ENSG00000169967|ENST00000682094|MAP3K2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.758884	981.503215	-0.46712	-0.00022971	1.6501	0.00081146	1.183	0.00058174	491.75921264838956	27.825	0.4529	27.825	27.471	27.924	0	0.11456	0.00028255	NaN	35.618	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109950	+		68952	26422	48370	48449							0.011723204745862859
RPYTGGKGF	9	Unmodified	_RPYTGGKGF_					0	0	0			REV__ENSG00000169967|ENST00000682094|MAP3K2	REV__ENSG00000169967|ENST00000682094|MAP3K2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	491.758884	981.503215	-0.44822	-0.00022042	0.78531	0.00038619	0.33709	0.00016577	491.75866150140604	27.729	0.37922	27.716	27.5	27.88	-0.012983	0.0058762	-0.00056799	NaN	35.618	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61284	+		68953	26422	48370	48449							0.011723204745862859
RPYTYSNYSHG	11	Unmodified	_RPYTYSNYSHG_					0	0	0			REV__ENSG00000101349|ENST00000353224|PAK5	REV__ENSG00000101349|ENST00000353224|PAK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.779296875	3	448.870431	1343.58946	0.36508	0.00016387	2.4788	0.0011126	2.8438	0.0012765	448.8713343251466	68.064	0.70303	67.776	67.552	68.255	-0.28835					20	17	2	0	0	0	0.024731	1	8157	8157		30.569	18.933	1	98186	+		68954	21223	48371	48450	74955	74955					-0.06858764481376056
RPYVKQVVLL	10	Unmodified	_RPYVKQVVLL_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2351989746094	3	405.592169	1213.75468	0.15794	6.406E-05	-0.3173	-0.00012869	-0.15936	-6.4634E-05	405.59260170983856	29.372	0.17251	29.199	29.07	29.242	-0.17258					6	3	2	0	0	0	0.03519	1	1769	1769		21.686	0.8486	1	10531	+		68955	24336	48372	48451	74956	74956					0.15635119116222995
RPYWCISR	8	Unmodified	_RPYWCISR_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.2981567382812	2	540.774011	1079.53347	-1.5752	-0.00085182	3.1979	0.0017293	1.6227	0.00087751	540.7741448685949	21.892	0.24692	21.964	21.781	22.028	0.071487					6	4	2	0	0	0	0.027866	1	671	671		29.15	0	1	5414.7			68956	1367	48373	48452	74957	74957					-0.0031164413189799234
RQAAFQSLG	9	Unmodified	_RQAAFQSLG_					0	0	0		nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000285124.12_1_18:9562972-9595043:-|nuORF;PPP4R1|p.D674Efs*35|1|0.49|ENSG00000154845|chr18:9559425-9559426|-/T|frameshift_variant	nc|ENSG00000154845|Q8TF05-2|PPP4R1	nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2637634277344	2	489.261791	976.509028	3.3431	0.0016356	0.15589	7.6273E-05	3.4989	0.0017119	489.2617385935617	18.641	1.6967	18.704	18.222	19.918	0.063307					66	34	3	0	0	0	0.89441	1	275	275		32.812	3.6629	1	181340			68957	6439	48374	48453	74958	74958					0.01983418986230845
RQAAQEPSAV	10	Unmodified	_RQAAQEPSAV_					0	0	0		ENSG00000129654|ENST00000322957|FOXJ1	ENSG00000129654|ENST00000322957|FOXJ1	ENSG00000129654|ENST00000322957|FOXJ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.7743530273438	2	528.775262	1055.53597	-0.70265	-0.00037154	0.55328	0.00029256	-0.14936	-7.898E-05	528.7754670382185	32.028	0.81209	32.04	31.782	32.594	0.011799					51	20	4	0	0	0	0.66532	1	2170	2170		69.628	7.5202	1	2721600			68958	4362	48375	48454	74959	74959					0.010424828067471026
RQALEARLV	9	Unmodified	_RQALEARLV_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3176879882812	2	528.31964	1054.62473	-0.69023	-0.00036466	0.31421	0.000166	-0.37602	-0.00019866	528.3197624711897	39.261	0.69227	39.261	39.041	39.733	0					57	19	4	0	0	0	0.19099	1	3371	3371		90.37	7.6193	1	3972500			68959	2923	48376	48455	74960	74960					0.09959942837076596
RQALEARLV	9	Unmodified	_RQALEARLV_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3181762695312	2	528.31964	1054.62473	-1.0821	-0.00057168	0.75844	0.0004007	-0.32364	-0.00017099	528.3200466195584	39.305	0.99893	39.207	38.807	39.806	-0.098755					74	27	4	0	0	0	0.086035	2	3346	3346;3359		115.49	12.653	1	3340000			68960	2923	48376	48455	74961;74962	74961					0.09959942837076596
RQALEARLV	9	Unmodified	_RQALEARLV_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.318115234375	2	528.31964	1054.62473	-0.8012	-0.00042329	0.52828	0.0002791	-0.27292	-0.00014419	528.3198732868914	39.472	0.84296	39.496	39.135	39.978	0.023727					71	23	5	0	0	0	0.2101	1	3350	3350		87.696	7.2418	1	3283100			68961	2923	48376	48455	74963	74963					0.09959942837076596
RQALVLLTV	9	Unmodified	_RQALVLLTV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8283386230469	2	506.829309	1011.64407	-0.16584	-8.4051E-05	0.052439	2.6577E-05	-0.1134	-5.7473E-05	506.82918241668375	67.429	0.93767	67.429	67.126	68.064	0					49	23	4	0	0	0	0.35646	1	8048	8048		68.787	15.435	1	2257700			68962	3499	48377	48456	74964	74964					0.1387089912797137
RQALVLLTV	9	Unmodified	_RQALVLLTV_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.8284912109375	2	506.829309	1011.64407	0.1956	9.9134E-05	-0.24433	-0.00012384	-0.048736	-2.4701E-05	506.8290359919761	67.51	0.93263	67.534	67.23	68.163	0.023911					50	23	4	0	0	0	0.4752	1	7983	7983		60.972	5.4677	1	1939500			68963	3499	48377	48456	74965	74965					0.1387089912797137
RQAPAPTVI	9	Unmodified	_RQAPAPTVI_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7825012207031	2	476.782359	951.550165	0.96166	0.0004585	-0.71498	-0.00034089	0.24668	0.00011761	476.7818126399353	40.793	0.77517	40.793	40.551	41.326	0					58	21	5	0	0	0	0.53979	1	3617	3617		56.721	17.468	1	2797300			68964	6733	48378	48457	74966	74966					0.07245180025688569
RQAPAPTVI	9	Unmodified	_RQAPAPTVI_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7822570800781	2	476.782359	951.550165	0.96969	0.00046233	-0.90545	-0.0004317	0.064243	3.063E-05	476.7817554249612	40.98	1.0273	40.857	40.547	41.574	-0.12317					66	28	4	0	0	0	0.16468	2	3627	3627;3641		96.19	32.884	1	2830400			68965	6733	48378	48457	74967;74968	74967					0.07245180025688569
RQAPAPTVI	9	Unmodified	_RQAPAPTVI_					0	0	0		ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.78253173828125	2	476.782359	951.550165	-0.029261	-1.3951E-05	0.21066	0.00010044	0.1814	8.649E-05	476.7822546795278	40.954	0.86728	40.977	40.696	41.564	0.023006					58	24	4	0	0	0	0.29158	1	3590	3590		76.774	21.27	1	2787300			68966	6733	48378	48457	74969	74969					0.07245180025688569
RQAQSPAGV	9	Unmodified	_RQAQSPAGV_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;PPFIA1-RNF167|1|fusion	nc|ENSG00000131626|Q13136-2|PPFIA1;PPFIA1-RNF167|1|fusion	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2450866699219	2	457.246141	912.477728	-1.0112	-0.00046235	1.1818	0.00054038	0.17065	7.8029E-05	457.24651703091314	24.587	1.067	24.539	23.957	25.024	-0.047146					55	23	3	0	0	0	0.77768	1	1067	1067		40.778	0.20554	1	515110			68967	4537;18984	48379	48458	74970	74970					0.017988459521461664
RQASPNIVI	9	Unmodified	_RQASPNIVI_					0	0	0		ENST00000473608.1_1_3:20017064-20025312:+|nuORF;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C;ENST00000469122.5_1_3:19992498-20019915:+|nuORF	ENST00000473608.1_1_3:20017064-20025312:+|nuORF	ENST00000473608.1_1_3:20017064-20025312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2928771972656	2	499.293091	996.571629	-0.11526	-5.755E-05	0.14018	6.9991E-05	0.024916	1.2441E-05	499.29311566896223	47.471	1.3694	47.471	47.216	48.585	0					69	40	4	0	0	0	0.5973	1	4768	4768		52.937	0.63753	1	5179800			68968	2929	48380	48459	74971	74971					0.07320565054419603
RQASSGTIIL	10	Unmodified	_RQASSGTIIL_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3037109375	2	523.303655	1044.59276	0.13302	6.9608E-05	-1.6088	-0.00084187	-1.4758	-0.00077227	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	1.0508	1	11196	11196		39.253	2.2244	1	10615000			68969	3969	48381	48460	74972	74972					0.07224530363305348
RQATPLKKV	9	Unmodified	_RQATPLKKV_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;CEP135-DCAF13|1|fusion;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.8324584960938	2	520.832383	1039.65021	0.33601	0.00017501	-0.50598	-0.00026353	-0.16997	-8.8524E-05	520.8320546702805	20.835	0.83604	20.904	20.563	21.399	0.068901					42	16	4	0	0	0	0.14024	1	550	550		101.6	22.15	1	459760			68970	7345	48382	48461	74973	74973					0.13197417359515384
RQATPLKKV	9	Unmodified	_RQATPLKKV_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;CEP135-DCAF13|1|fusion;ENST00000495256.1_1_7:105766226-105766550:+|nuORF	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.832383	1039.65021	0.86495	0.00045049	-0.37268	-0.0001941	0.49227	0.00025639	520.8319449311053	20.771	0.24615	20.575	20.435	20.681	-0.19577	-0.23235	-0.00069672	NaN	101.6	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10397			68971	7345	48382	48461							0.13197417359515384
RQAVSVTRV	9	Unmodified	_RQAVSVTRV_					0	0	0			REV__ENST00000341976.4_2_22:24087343-24092930:-|nuORF	REV__ENST00000341976.4_2_22:24087343-24092930:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	2	508.30399	1014.59343	-0.56885	-0.00028915	-0.97208	-0.00049411	-1.5409	-0.00078326	508.30381095689006	26.178	1.9952	26.178	25.694	27.689	0					146	46	6	0	0	0	0.15366	1	1331	1331		98.629	10.452	1	77267000	+		68972	30642	48383	48462	74974	74974					0.08671369803005291
RQAVSVTRV	9	Unmodified	_RQAVSVTRV_					0	0	0			REV__ENST00000341976.4_2_22:24087343-24092930:-|nuORF	REV__ENST00000341976.4_2_22:24087343-24092930:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.3036193847656	2	508.30399	1014.59343	-0.029451	-1.497E-05	-1.7887	-0.00090921	-1.8182	-0.00092418	508.30340766595833	26.03	1.7409	26.111	25.793	27.534	0.081293					138	43	6	0	0	0	0.12602	1	1277	1277		104.75	0.68976	1	77932000	+		68973	30642	48383	48462	74975	74975					0.08671369803005291
RQDLTTLDV	9	Unmodified	_RQDLTTLDV_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3;ENST00000487075.1_1_X:24073085-24080702:+|nuORF	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.78515625	2	530.785296	1059.55604	-0.94865	-0.00050353	0.52909	0.00028083	-0.41956	-0.00022269	530.7855351999049	53.535	0.95507	53.388	53.132	54.088	-0.14723					52	26	2	0	0	0	0.30449	1	5786	5786		75.043	11.737	1	4591500			68974	4449	48384	48463	74976	74976					0.02864233746709033
RQDPGSLSSL	10	Unmodified	_RQDPGSLSSL_					0	0	0			REV__ENST00000317578.6_1_19:46268115-46268280:-|nuORF	REV__ENST00000317578.6_1_19:46268115-46268280:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2752685546875	2	530.275095	1058.53564	-0.44773	-0.00023742	0.34473	0.0001828	-0.10301	-5.4622E-05	530.2752029723864	40.329	1.3021	40.329	40.024	41.326	0					75	36	3	0	0	0	0.50091	1	3568	3568		88.177	12.007	1	10749000	+		68975	30298	48385	48464	74977	74977					0.008710630869245506
RQDPGSLSSL	10	Unmodified	_RQDPGSLSSL_					0	0	0			REV__ENST00000317578.6_1_19:46268115-46268280:-|nuORF	REV__ENST00000317578.6_1_19:46268115-46268280:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.27490234375	2	530.275095	1058.53564	-0.7111	-0.00037708	0.58669	0.00031111	-0.12441	-6.5974E-05	530.2752887925428	40.497	0.94408	40.52	40.275	41.219	0.023006					77	26	4	0	0	0	0.50091	1	3536	3536		88.177	2.3151	1	9755200	+		68976	30298	48385	48464	74978	74978					0.008710630869245506
RQEDLIMKV	9	Unmodified	_RQEDLIMKV_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.3143310546875	2	566.313166	1130.61178	-0.59961	-0.00033957	0.13196	7.4731E-05	-0.46765	-0.00026483	566.3130624855862	45.83	0.72218	45.83	45.514	46.236	0					43	20	3	0	0	0	0.32064	1	4505	4505		72.879	19.528	1	2341000			68977	8843	48386	48465	74979	74979					0.05169743662668225
RQEEAAQP	8	Unmodified	_RQEEAAQP_					0	0	0			REV__ENST00000379370.6_1_1:990889-991123:+|nuORF	REV__ENST00000379370.6_1_1:990889-991123:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.258544921875	2	464.727781	927.441008	-1.0554	-0.0004905	1.1584	0.00053834	0.10295	4.7844E-05	464.7281153382104	21.072	0.58995	21.072	20.753	21.342	0					15	11	2	0	0	0	0.027866	1	644	644		40.778	3.6191	1	30617	+		68978	31431	48387	48466	74980	74980					-0.025614506644274115
RQEEAAQP	8	Unmodified	_RQEEAAQP_					0	0	0			REV__ENST00000379370.6_1_1:990889-991123:+|nuORF	REV__ENST00000379370.6_1_1:990889-991123:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	464.727781	927.441008	-0.34548	-0.00016056	0.17344	8.0602E-05	-0.17204	-7.9953E-05	464.7277477063214	21.166	0.34375	21.076	20.911	21.255	-0.090092	0.0016142	-0.00046476	NaN	40.778	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27450	+		68979	31431	48387	48466							-0.025614506644274115
RQEEVRQSV	9	Unmodified	_RQEEVRQSV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.80029296875	2	565.799269	1129.58398	-0.83288	-0.00047124	0.82531	0.00046696	-0.0075608	-4.2779E-06	565.7996090061412	22.739	0.6474	22.739	22.432	23.079	0					35	13	4	0	0	0	0.43628	1	823	823		63.534	4.7519	1	491100			68980	1333	48388	48467	74981	74981					0.024375567267952647
RQEEVRQSV	9	Unmodified	_RQEEVRQSV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.7999877929688	2	565.799269	1129.58398	-1.56	-0.00088262	1.4245	0.00080599	-0.13544	-7.663E-05	565.7999754555631	22.603	0.6588	22.677	22.365	23.024	0.073954					31	13	4	0	0	0	0.10482	1	763	763		109.44	16.296	1	472330			68981	1333	48388	48467	74982	74982					0.024375567267952647
RQEEVRQSV	9	Unmodified	_RQEEVRQSV_					0	0	0		nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-7|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	nc|ENSG00000066136|Q13952-4|NFYC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	565.799269	1129.58398	-0.54916	-0.00031072	0.34727	0.00019649	-0.20189	-0.00011423	565.7993541767939	22.832	0.8735	22.757	22.223	23.097	-0.075296	0.033026	-0.0005161	NaN	109.44	38	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532990			68982	1333	48388	48467							0.024375567267952647
RQEGVVAGARR	11	Unmodified	_RQEGVVAGARR_					0	0	0			REV__ENST00000258341.4_1_1:182992616-182992679:+|nuORF	REV__ENST00000258341.4_1_1:182992616-182992679:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.230294	1197.66905	0.24092	9.6422E-05	-0.58922	-0.00023582	-0.3483	-0.0001394	400.230197241662	22.087	1.5775	22.011	21.56	23.137	-0.075296					119	33	6	0	0	0	0.86757	1	739	739		53.597	2.8056	1	6459900	+		68983	29574	48389	48468	74983	74983					0.07812346983246243
RQFAAQTV	8	Unmodified	_RQFAAQTV_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.7510986328125	2	460.751059	919.487565	-0.21921	-0.000101	-0.043308	-1.9954E-05	-0.26252	-0.00012096	460.7510318823482	34.387	1.9437	34.387	33.626	35.57	0					95	50	5	0	0	0	0.28835	3	2549	2549;2562;2574		116.9	23.708	1	13500000			68984	5721	48390	48469	74984;74985;74986	74984					0.0246003395752723
RQFAAQTV	8	Unmodified	_RQFAAQTV_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.7510986328125	2	460.751059	919.487565	0.096711	4.456E-05	-0.44527	-0.00020516	-0.34856	-0.0001606	460.7508695777908	34.186	1.2731	34.181	33.829	35.102	-0.0045624					78	32	5	0	0	0	0.42912	1	2535	2535		93.195	27.392	1	13566000			68985	5721	48390	48469	74987	74987					0.0246003395752723
RQFAAQTV	8	Unmodified	_RQFAAQTV_					0	0	0		ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.75103759765625	2	460.751059	919.487565	-0.22876	-0.0001054	-0.071684	-3.3029E-05	-0.30045	-0.00013843	460.7510453822485	34.144	1.5981	34.195	33.493	35.091	0.050251					89	40	5	0	0	0	0.30053	3	2458	2458;2483;2498		111.65	13.019	1	11854000			68986	5721	48390	48469	74988;74989;74990	74988					0.0246003395752723
RQFEITSV	8	Unmodified	_RQFEITSV_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;ENST00000460007.1_1_10:29764360-29770575:-|nuORF;ENST00000422642.6_2_10:30987145-31001569:+|nuORF	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2644958496094	2	490.263999	978.513445	0.058014	2.8442E-05	-0.85237	-0.00041789	-0.79435	-0.00038944	490.26351801643557	50.826	0.95863	50.826	50.609	51.568	0					61	26	4	0	0	0	0.50717	2	5355	5355;5378		84.916	13.62	1	4490000			68987	9981	48391	48470	74991;74992	74991					0.02332883409144415
RQFEITSV	8	Unmodified	_RQFEITSV_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.E2126Rfs*5|1|0.15|ENSG00000197321|chr10:29462304-29462305|-/C|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;ENST00000460007.1_1_10:29764360-29770575:-|nuORF;ENST00000422642.6_2_10:30987145-31001569:+|nuORF	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.26385498046875	2	490.263999	978.513445	-0.77621	-0.00038055	-0.093007	-4.5598E-05	-0.86922	-0.00042615	490.26384559123045	50.737	0.56686	50.818	50.543	51.11	0.080994					51	15	4	0	0	0	0.47665	3	5273	5263;5273;5286		87.754	12.711	1	3650100			68988	9981	48391	48470	74993;74994;74995	74994					0.02332883409144415
RQFRSAGN	8	Unmodified	_RQFRSAGN_					0	0	0			REV__ENST00000033079.7_2_5:137356801-137368637:-|nuORF	REV__ENST00000033079.7_2_5:137356801-137368637:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24407958984375	2	468.243932	934.473312	0.092805	4.3455E-05	1.4561	0.00068179	1.5489	0.00072525	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	1.0574	1	12966	12966		23.042	2.0956	1	4477100	+		68989	29261	48392	48471	74996	74996					0.0034538152923460075
RQFSTPFQL	9	Unmodified	_RQFSTPFQL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;POGZ-SLC6A13|4|fusion;POGZ-SLC6A13|3|fusion;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;POGZ-SLC6A13|2|fusion;POGZ-SLC6A13|1|fusion;POGZ-SLC6A13|5|fusion	nc|ENSG00000143442|Q7Z3K3-7|POGZ	nc|ENSG00000143442|Q7Z3K3-7|POGZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.2982788085938	2	562.298373	1122.58219	-0.8961	-0.00050388	0.65328	0.00036734	-0.24282	-0.00013654	562.2987765332878	65.519	1.4355	65.246	64.786	66.221	-0.27282					112	38	4	0	0	0	0.12933	5	7710	7699;7710;7722;7734;7746		104.01	32.136	1	34245000			68990	18346	48393	48472	74997;74998;74999;75000;75001	74998					0.025805477088624684
RQFSTPFQL	9	Unmodified	_RQFSTPFQL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;POGZ-SLC6A13|4|fusion;POGZ-SLC6A13|3|fusion;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;POGZ-SLC6A13|2|fusion;POGZ-SLC6A13|1|fusion;POGZ-SLC6A13|5|fusion	nc|ENSG00000143442|Q7Z3K3-7|POGZ	nc|ENSG00000143442|Q7Z3K3-7|POGZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.2984619140625	2	562.298373	1122.58219	-0.53715	-0.00030204	0.26172	0.00014716	-0.27543	-0.00015488	562.2985327342412	65.234	1.3503	65.272	64.854	66.205	0.037384					116	36	4	0	0	0	0.12933	5	7607	7607;7619;7631;7643;7655		104.01	41.906	1	34504000			68991	18346	48393	48472	75002;75003;75004;75005;75006	75002					0.025805477088624684
RQFTSSSSI	9	Unmodified	_RQFTSSSSI_					0	0	0		CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF	CON__Q9QWL7	CON__Q9QWL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.75604248046875	2	506.756538	1011.49852	-0.78295	-0.00039677	-0.22047	-0.00011172	-1.0034	-0.00050849	506.7564324202911	35.021	1.7912	35.021	34.371	36.162	0					208	47	7	0	0	0	0.013293	6	2645	2634;2645;2657;2669;2682;2696		176.09	37.261	1	40515000		+	68992	573	48394	48473	75007;75008;75009;75010;75011;75012	75008					-0.006766084588321064
RQFTSSSSI	9	Unmodified	_RQFTSSSSI_					0	0	0		CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF	CON__Q9QWL7	CON__Q9QWL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7559509277344	2	506.756538	1011.49852	-0.79189	-0.0004013	-0.29129	-0.00014761	-1.0832	-0.00054891	506.7563987537857	34.794	2.0528	34.773	33.931	35.984	-0.021763					206	53	6	0	0	0	0.013293	6	2611	2588;2599;2611;2623;2637;2650		176.09	37.261	1	36460000		+	68993	573	48394	48473	75013;75014;75015;75016;75017;75018	75015					-0.006766084588321064
RQFTSSSSI	9	Unmodified	_RQFTSSSSI_					0	0	0		CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;ENST00000491673.1_1_17:39779200-39780782:-|nuORF	CON__Q9QWL7	CON__Q9QWL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.7563171386719	2	506.756538	1011.49852	-0.60322	-0.00030569	-0.38006	-0.0001926	-0.98328	-0.00049829	506.7563355861631	34.807	2.1123	34.857	33.965	36.077	0.050255					239	54	7	0	0	0	0.014918	6	2554	2544;2554;2566;2578;2590;2604		162.25	23.427	1	38590000		+	68994	573	48394	48473	75019;75020;75021;75022;75023;75024	75020					-0.006766084588321064
RQFYEEELI	9	Unmodified	_RQFYEEELI_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	613.8064575195312	2	613.806228	1225.5979	-1.2997	-0.00079774	-0.44199	-0.00027129	-1.7416	-0.001069	613.8059639515317	62.504	0.44044	62.265	62.174	62.615	-0.23926					19	13	3	0	0	0	0.6187	1	7252	7252		44.377	0	1	1734600			68995	2480;18139	48395	48474	75025	75025					-0.005872105647540593
RQGANINEI	9	Unmodified	_RQGANINEI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7697448730469	2	507.76998	1013.52541	-0.95924	-0.00048707	-0.12856	-6.5281E-05	-1.0878	-0.00055235	507.7701333292522	36.355	1.5299	36.355	36.029	37.559	0					122	41	5	0	0	0	0.067814	2	2885	2885;2898		122.18	25.986	1	15180000			68996	7950	48396	48475	75026;75027	75026					0.019185001523283063
RQGANINEI	9	Unmodified	_RQGANINEI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7695007324219	2	507.76998	1013.52541	-1.108	-0.00056261	0.14064	7.1412E-05	-0.96736	-0.0004912	507.7702591306015	36.167	1.2847	36.125	35.864	37.148	-0.042458					102	34	5	0	0	0	0.03849	4	2845	2824;2833;2845;2860		134.81	26.723	1	16361000			68997	7950	48396	48475	75028;75029;75030;75031	75030					0.019185001523283063
RQGANINEI	9	Unmodified	_RQGANINEI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	OPSCC_39_ClassI_Rep-3	3	507.76934814453125	2	507.76998	1013.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.221	1	36.259	35.759	36.759	0.038044								0	0	0	0.017387	1	2800	2800		134.81	21.399	1				68998	7950	48396	48475	75032	75032					0.019185001523283063
RQGANINEI	9	Unmodified	_RQGANINEI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	OPSCC_39_ClassI_Rep-3	3	507.7696228027344	2	507.76998	1013.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.289	1	36.327	35.827	36.827	0.038044								0	0	0	0.014429	1	2812	2812		143.89	30.475	1				68999	7950	48396	48475	75033	75033					0.019185001523283063
RQGANINEI	9	Unmodified	_RQGANINEI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	OPSCC_39_ClassI_Rep-3	3	507.7696838378906	2	507.76998	1013.52541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.362	1	36.4	35.9	36.9	0.038044								0	0	0	0.096542	1	2824	2824		93.195	7.836	1				69000	7950	48396	48475	75034	75034					0.019185001523283063
RQGAQHLL	8	Unmodified	_RQGAQHLL_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7643127441406	2	461.764501	921.514448	-0.29537	-0.00013639	0.4643	0.0002144	0.16893	7.8006E-05	461.7645652630605	21.796	1.24	21.706	21.109	22.349	-0.090092					47	25	3	0	0	0	1.0133	1	705	705		35.201	3.2459	1	655960			69001	5910	48397	48476	75035	75035					0.05055142568721749
RQGASFLGI	9	Unmodified	_RQGASFLGI_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.7667541503906	2	474.766709	947.518865	1.03	0.00048899	-0.91509	-0.00043445	0.11487	5.4534E-05	474.7661931890016	55.01	1.2032	55.01	54.689	55.892	0					79	33	4	0	0	0	0.12602	4	6034	6034;6044;6057;6069		104.75	0	1	7641200			69002	2661;4704	48398	48477	75036;75037;75038;75039	75036					0.04300606991614586
RQGASFLGI	9	Unmodified	_RQGASFLGI_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	474.7668151855469	2	474.766709	947.518865	0.35752	0.00016974	-0.27229	-0.00012928	0.08523	4.0464E-05	474.7664861250772	55.098	1.176	54.947	54.608	55.784	-0.15036					76	32	4	0	0	0	0.17822	4	6046	6021;6032;6046;6058		93.195	0	1	8208300			69003	2661;4704	48398	48477	75040;75041;75042;75043	75042					0.04300606991614586
RQGASFLGI	9	Unmodified	_RQGASFLGI_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.76678466796875	2	474.766709	947.518865	0.065023	3.0871E-05	-0.064461	-3.0604E-05	0.00056156	2.6661E-07	474.766583705201	54.764	1.143	54.862	54.491	55.634	0.098015					77	31	4	0	0	0	0.047345	4	5933	5924;5933;5946;5958		129.68	0	1	8479700			69004	2661;4704	48398	48477	75044;75045;75046;75047	75045					0.04300606991614586
RQGEVVQRL	9	Unmodified	_RQGEVVQRL_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.8145751953125	2	542.814722	1083.61489	-1.1884	-0.00064506	0.77116	0.0004186	-0.4172	-0.00022646	542.8150587699656	30.01	1.1512	30.018	29.717	30.868	0.0086708					56	27	4	0	0	0	0.22902	2	1883	1870;1883		85.161	6.0219	1	1368800			69005	9771	48399	48478	75048;75049	75049					0.07642754831704224
RQGEVVQRL	9	Unmodified	_RQGEVVQRL_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.8145751953125	2	542.814722	1083.61489	-1.6944	-0.00091974	1.1918	0.00064692	-0.50261	-0.00027283	542.8153175248375	29.716	0.73338	29.794	29.566	30.3	0.078344					47	17	4	0	0	0	0.2101	1	1807	1807		87.696	10.922	1	1605300			69006	9771	48399	48478	75050	75050					0.07642754831704224
RQGNPVAPIK	10	Unmodified	_RQGNPVAPIK_					0	0	0		nc|ENSG00000143641|Q10471-2|GALNT2;ENSG00000143641|ENST00000366672|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	nc|ENSG00000143641|Q10471-2|GALNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2979736328125	2	540.31964	1078.62473	-0.92292	-0.00049867	-1.3635	-0.00073673	-2.2864	-0.0012354	540.8198499839528	21.847	0.23876	21.758	21.637	21.876	-0.089127					6	4	2	0	0	0	0.03519	1	703	703		42.396	0	1	8845.3			69007	5676	48400	48479	75051	75051					0.0885594283708997
RQGPNANLV	9	Unmodified	_RQGPNANLV_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7674560546875	2	484.76724	967.519927	-0.68566	-0.00033238	0.20063	9.7257E-05	-0.48503	-0.00023513	484.76733828491444	35.109	1.0982	35.109	34.826	35.924	0					58	28	3	0	0	0	0.11848	2	2681	2681;2695		106.42	29.641	1	17271000			69008	2366	48401	48480	75052;75053	75052					0.034868213605250276
RQGPNANLV	9	Unmodified	_RQGPNANLV_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7673645019531	2	484.76724	967.519927	-0.9066	-0.00043949	0.38289	0.00018561	-0.52371	-0.00025388	484.7674367794304	34.947	1.075	34.925	34.634	35.709	-0.021763					59	27	3	0	0	0	0.25032	3	2636	2636;2648;2661		82.305	23.523	1	16700000			69009	2366	48401	48480	75054;75055;75056	75054					0.034868213605250276
RQGPNANLV	9	Unmodified	_RQGPNANLV_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.R654Nfs*6|1|0.07|ENSG00000101972|chrX:124063985-124063986|-/AATAC|frameshift_variant;STAG2|p.R654Sfs*7|1|0.07|ENSG00000101972|chrX:124063987-124063988|-/T|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7670593261719	2	484.76724	967.519927	-0.87034	-0.00042191	0.39718	0.00019254	-0.47316	-0.00022937	484.76742997080987	34.95	1.1056	35.001	34.723	35.828	0.050255					61	28	3	0	0	0	0.15889	3	2616	2592;2603;2616		97.473	34.166	1	16452000			69010	2366	48401	48480	75057;75058;75059	75059					0.034868213605250276
RQGTLNYIVQS	11	Unmodified	_RQGTLNYIVQS_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.3429565429688	2	639.843676	1277.6728	-0.3483	-0.00022286	-0.31445	-0.0002012	-0.66275	-0.00042406	639.8427864803843	100.12	0.5573	99.947	99.726	100.28	-0.17088					41	18	3	0	0	0	0.87847	1	12442	12442		52.937	4.9772	1	1080000	+		69011	24336	48402	48481	75060	75060					0.04506971966452511
RQGVLGIKV	9	Unmodified	_RQGVLGIKV_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000421346.1_1_20:37166917-37166977:+|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.3131103515625	2	485.313826	968.613099	-1.1967	-0.00058078	0.65369	0.00031725	-0.54303	-0.00026354	485.3139540040231	44.1	1.7136	44.1	43.8	45.514	0					116	49	5	0	0	0	0.20967	2	4178	4178;4190		87.754	16.459	1	43296000			69012	6078	48403	48482	75061;75062	75061					0.12753745813745354
RQGVLGIKV	9	Unmodified	_RQGVLGIKV_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000421346.1_1_20:37166917-37166977:+|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.3136901855469	2	485.313826	968.613099	-1.2198	-0.00059197	0.8735	0.00042392	-0.34625	-0.00016804	485.3140683169259	44.29	1.4688	44.146	43.848	45.316	-0.14471					114	42	5	0	0	0	0.20967	3	4177	4166;4177;4189		87.754	8.0731	1	40669000			69013	6078	48403	48482	75063;75064;75065	75064					0.12753745813745354
RQGVLGIKV	9	Unmodified	_RQGVLGIKV_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000421346.1_1_20:37166917-37166977:+|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.3138122558594	2	485.313826	968.613099	-0.73355	-0.000356	0.35686	0.00017319	-0.37669	-0.00018281	485.3138184753033	44.155	1.6502	44.192	43.923	45.573	0.036903					127	47	5	0	0	0	0.27161	2	4139	4115;4139		79.451	16.145	1	37463000			69014	6078	48403	48482	75066;75067	75067					0.12753745813745354
RQGYTSLSR	9	Unmodified	_RQGYTSLSR_					0	0	0			REV__ENST00000483748.5_1_15:42134789-42134993:+|nuORF	REV__ENST00000483748.5_1_15:42134789-42134993:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2862548828125	2	534.283254	1066.55196	0.14511	7.7529E-05	1.9432	0.0010382	2.0884	0.0011158	534.2843186877622	106.34	0.98719	106.18	105.77	106.76	-0.16132					86	45	3	0	0	0	0.80003	1	13240	13240		39.253	0.44669	1	230390	+		69015	33518	48404	48483	75068	75068					0.021341890436588073
RQHKQLRL	8	Unmodified	_RQHKQLRL_					0	0	0			REV__LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	REV__LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8327026367188	2	539.833249	1077.65194	1.1238	0.00060665	-1.5026	-0.00081113	-0.37879	-0.00020448	539.8323394916868	19.137	0.59357	18.903	18.682	19.275	-0.23345					26	11	3	0	0	0	1.0338	1	355	355		31.955	1.6371	1	303730	+		69016	36305	48405	48484	75069	75069					0.1162247116810704
RQHLQATGV	9	Unmodified	_RQHLQATGV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.2806396484375	2	505.280515	1008.54648	-0.72127	-0.00036444	0.39871	0.00020146	-0.32256	-0.00016298	505.28066867336554	24.674	1.3074	24.674	24.429	25.737	0					59	30	4	0	0	0	0.086035	2	1093	1093;1104		115.49	51.287	1	2062600			69017	1039	48406	48485	75070;75071	75070					0.04254510251860211
RQHLQATGV	9	Unmodified	_RQHLQATGV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.28070068359375	2	505.280515	1008.54648	-1.3277	-0.00067085	1.0849	0.0005482	-0.24274	-0.00012265	505.2809940202597	24.724	1.0357	24.677	24.264	25.3	-0.047148					58	23	4	0	0	0	0.15366	1	1084	1084		98.629	38.511	1	1670000			69018	1039	48406	48485	75072	75072					0.04254510251860211
RQHLQATGV	9	Unmodified	_RQHLQATGV_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.2806091308594	2	505.280515	1008.54648	0.27487	0.00013889	-0.67748	-0.00034232	-0.40262	-0.00020343	505.280110839034	24.63	0.9655	24.708	24.41	25.375	0.078346					57	21	5	0	0	0	0.12914	2	1037	1037;1048		104.06	41.949	1	1739500			69019	1039	48406	48485	75073;75074	75073					0.04254510251860211
RQHPQPYI	8	Unmodified	_RQHPQPYI_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.777099609375	2	519.777608	1037.54066	-1.7284	-0.00089838	1.3589	0.00070633	-0.36947	-0.00019204	519.7780658673449	29.794	0.97864	29.794	29.447	30.426	0					57	23	4	0	0	0	0.56067	1	1851	1851		79.939	8.6435	1	1235300			69020	5990	48407	48486	75075	75075					0.023394117401721815
RQHPQPYI	8	Unmodified	_RQHPQPYI_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7774658203125	2	519.777608	1037.54066	-0.71114	-0.00036963	0.27586	0.00014339	-0.43528	-0.00022625	519.7774631676984	29.769	0.89827	29.777	29.433	30.331	0.0086689					54	21	4	0	0	0	0.56067	1	1840	1840		79.939	3.1651	1	1210700			69021	5990	48407	48486	75076	75076					0.023394117401721815
RQHPQPYI	8	Unmodified	_RQHPQPYI_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.777608	1037.54066	-0.93888	-0.00048801	-1.6113	-0.00083754	-2.5502	-0.0013255	519.7769992072404	29.598	0.68376	29.353	29.011	29.695	-0.24523	-0.1841	-0.0022311	NaN	79.939	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120290			69022	5990	48407	48486							0.023394117401721815
RQHPQPYI	8	Unmodified	_RQHPQPYI_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.777608	1037.54066	-0.40374	-0.00020985	-2.7033	-0.0014051	-3.107	-0.0016149	519.7755067324505	29.518	0.46326	29.345	29.07	29.533	-0.17258	-0.19175	-0.0033662	NaN	79.939	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111320			69023	5990	48407	48486							0.023394117401721815
RQHPQPYI	8	Unmodified	_RQHPQPYI_					0	0	0		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.777608	1037.54066	-0.064172	-3.3355E-05	-2.9429	-0.0015297	-3.0071	-0.001563	519.7760990548587	29.505	0.41313	29.355	29.129	29.542	-0.14952	-0.18181	-0.0036154	NaN	79.939	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80486			69024	5990	48407	48486							0.023394117401721815
RQHVILNSKV	10	Unmodified	_RQHVILNSKV_					0	0	0			REV__ENSG00000198105|ENST00000395867|ZNF248	REV__ENSG00000198105|ENST00000395867|ZNF248	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	596.8087768554688	2	597.359296	1192.70404	-0.47747	-0.00028522	-4.1572	-0.0024834	-4.6347	-0.0027686	597.3569559665276	97.22	1.5511	97.059	96.209	97.76	-0.16106					54	34	2	0	0	0	0.03519	1	12098	12098		30.318	9.3708	1	285040	+		69025	24164	48408	48487	75077	75077					0.11539589791209437
RQIEYEYKL	9	Unmodified	_RQIEYEYKL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.3292236328125	2	621.32987	1240.64519	-0.55184	-0.00034287	0.39293	0.00024414	-0.1589	-9.8731E-05	621.3300072557917	45.563	0.94944	45.563	45.214	46.163	0					75	27	4	0	0	0	0.01896	3	4427	4427;4439;4450		150.36	54.546	1	5222900			69026	3286	48409	48488	75078;75079;75080	75078					0.03449068706231628
RQIEYEYKL	9	Unmodified	_RQIEYEYKL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.3305053710938	2	621.32987	1240.64519	-0.38338	-0.0002382	0.25251	0.00015689	-0.13087	-8.1312E-05	621.3299469868402	45.666	0.9255	45.515	45.211	46.136	-0.15156					75	26	4	0	0	0	0.056725	4	4427	4427;4437;4448;4463		126.24	51.199	1	5279400			69027	3286	48409	48488	75081;75082;75083;75084	75081					0.03449068706231628
RQIEYEYKL	9	Unmodified	_RQIEYEYKL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	621.32958984375	2	621.32987	1240.64519	-0.78976	-0.0004907	0.80636	0.00050102	0.016608	1.0319E-05	621.3302180345989	45.585	0.77791	45.629	45.311	46.088	0.043877					67	22	4	0	0	0	0.048057	2	4375	4375;4387		129.42	33.606	1	5387200			69028	3286	48409	48488	75085;75086	75085					0.03449068706231628
RQIFNGTFV	9	Unmodified	_RQIFNGTFV_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.2928466796875	2	541.293091	1080.57163	0.48471	0.00026237	-0.028963	-1.5678E-05	0.45575	0.00024669	541.2934899568442	59.351	1.3173	59.351	58.787	60.104	0					96	35	5	0	0	0	0.23085	4	6770	6760;6770;6781;6794		84.916	27.104	1	13426000			69029	5981;14677	48410	48489	75087;75088;75089;75090	75088					0.03456565054420935
RQIFNGTFV	9	Unmodified	_RQIFNGTFV_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.2931518554688	2	541.293091	1080.57163	0.32019	0.00017332	-0.68205	-0.00036919	-0.36186	-0.00019587	541.2927448895327	59.535	1.0596	59.335	58.994	60.053	-0.20016					91	28	5	0	0	0	0.31037	3	6766	6766;6778;6791		74.255	26.339	1	13673000			69030	5981;14677	48410	48489	75091;75092;75093	75091					0.03456565054420935
RQIFNGTFV	9	Unmodified	_RQIFNGTFV_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2924194335938	2	541.293091	1080.57163	-0.45215	-0.00024475	-0.15958	-8.6381E-05	-0.61174	-0.00033113	541.2929606091276	59.21	1.0297	59.296	59.026	60.056	0.085682					95	27	5	0	0	0	0.2508	4	6680	6660;6668;6680;6693		82.241	13.454	1	12531000			69031	5981;14677	48410	48489	75094;75095;75096;75097	75096					0.03456565054420935
RQIGQRTI	8	Unmodified	_RQIGQRTI_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.290771484375	2	486.290882	970.567212	-0.85653	-0.00041652	0.74584	0.0003627	-0.11069	-5.3826E-05	486.29119579253785	25.263	0.81753	25.263	24.919	25.737	0					56	19	4	0	0	0	0.44658	3	1178	1167;1178;1189		90.777	5.8611	1	4532300			69032	3232	48411	48490	75098;75099;75100	75099					0.08075100631526766
RQIGQRTI	8	Unmodified	_RQIGQRTI_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2906494140625	2	486.290882	970.567212	-0.99169	-0.00048225	0.98434	0.00047868	-0.0073464	-3.5725E-06	486.29130015665504	25.29	0.81767	25.256	24.948	25.765	-0.034395					55	19	4	0	0	0	0.56592	2	1163	1163;1173		79.451	10.048	1	4519300			69033	3232	48411	48490	75101;75102	75101					0.08075100631526766
RQIGQRTI	8	Unmodified	_RQIGQRTI_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.29058837890625	2	486.290882	970.567212	-0.20209	-9.8273E-05	-0.1548	-7.5277E-05	-0.35689	-0.00017355	486.2908179982032	25.155	0.74506	25.235	24.961	25.706	0.08009					32	17	2	0	0	0	0.68164	1	1104	1104		68.787	13.283	1	4891200			69034	3232	48411	48490	75103	75103					0.08075100631526766
RQIKINEV	8	Unmodified	_RQIKINEV_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3006591796875	2	500.300916	998.587279	-0.45741	-0.00022884	-0.39514	-0.00019769	-0.85255	-0.00042653	500.3005740004996	32.661	0.64093	32.661	32.3	32.941	0					48	16	4	0	0	0	0.6536	1	2269	2269		71.296	7.9894	1	7413600			69035	6189	48412	48491	75104	75104					0.08792851571467963
RQIKINEV	8	Unmodified	_RQIKINEV_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.30047607421875	2	500.300916	998.587279	-0.59248	-0.00029642	-0.36178	-0.000181	-0.95426	-0.00047742	500.30058323314984	32.528	0.55827	32.54	32.26	32.818	0.011799					38	14	3	0	0	0	0.6536	1	2234	2234		71.296	0	1	7515500			69036	6189	48412	48491	75105	75105					0.08792851571467963
RQIKINEV	8	Unmodified	_RQIKINEV_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3006591796875	2	500.300916	998.587279	-0.15362	-7.6857E-05	-1.7973	-0.00089921	-1.951	-0.00097607	500.30038800266993	32.337	0.64147	32.4	32.125	32.766	0.062885					77	16	7	0	0	0	0.6536	1	2173	2173		71.296	2.5089	1	6558300			69037	6189	48412	48491	75106	75106					0.08792851571467963
RQIRLSSP	8	Unmodified	_RQIRLSSP_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2817077636719	2	478.785433	955.556313	0.18675	8.9415E-05	-3.2088	-0.0015363	-3.0221	-0.0014469	478.7840791757375	50.465	0.30263	50.465	50.274	50.577	0					15	8	2	0	0	0	0.027866	1	5289	5289		31.955	0	1	1707500			69038	4910	48413	48492	75107	75107					0.07675698257230579
RQIRWLAKQER	11	Unmodified	_RQIRWLAKQER_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF;REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.6258239746094	3	495.291664	1482.85316	0.34089	0.00016884	-0.6633	-0.00032853	-0.32241	-0.00015969	495.29135186779763	18.633	0.93958	18.43	18.113	19.053	-0.20371					41	18	3	0	0	0	1.0074	1	331	331		35.178	2.4277	1	205770	+		69039	33886;19190	48414	48493	75108	75108					0.13105115413986823
RQIRWLAKQER	11	Unmodified	_RQIRWLAKQER_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF;REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	495.291664	1482.85316	3.377	0.0016726	-4.3164	-0.0021379	-0.93949	-0.00046532	495.623768415519	18.161	0.24543	18.161	17.94	18.186	0	-0.22758	-0.0039119	NaN	35.178	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10386	+		69040	33886;19190	48414	48493							0.13105115413986823
RQIRWLAKQER	11	Unmodified	_RQIRWLAKQER_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF;REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	495.291664	1482.85316	4.0425	0.0020022	-5.6927	-0.0028196	-1.6503	-0.00081738	495.62343159064187	18.491	0.19709	18.554	18.402	18.599	0.063307	0.16526	-0.0059569	NaN	35.178	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6656.3	+		69041	33886;19190	48414	48493							0.13105115413986823
RQIRWLAKQER	11	Unmodified	_RQIRWLAKQER_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF;REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	495.291664	1482.85316	0.46196	0.0002288	-0.82674	-0.00040948	-0.36479	-0.00018068	495.29122714340116	18.527	0.79027	18.371	18.099	18.889	-0.15637	-0.017875	0.0012733	NaN	35.178	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257530	+		69042	33886;19190	48414	48493							0.13105115413986823
RQITAQQI	8	Unmodified	_RQITAQQI_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.27716064453125	2	479.277441	956.540328	-0.13172	-6.3128E-05	-0.013769	-6.5993E-06	-0.14548	-6.9728E-05	479.2772982734646	35.288	0.62932	35.288	35.018	35.647	0					45	16	4	0	0	0	0.50717	1	2707	2707		84.916	7.5979	1	4134500			69043	756	48415	48494	75109	75109					0.06031992020314192
RQITAQQI	8	Unmodified	_RQITAQQI_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MSMS	OPSCC_39_ClassI_Rep-2	2	479.2776794433594	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.082	1	35.06	34.56	35.56	-0.021763								0	0	0	0.3354	1	2657	2657		84.916	21.609	1				69044	756	48415	48494	75110	75110					0.06031992020314192
RQITAQQI	8	Unmodified	_RQITAQQI_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MSMS	OPSCC_39_ClassI_Rep-2	2	479.2770080566406	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.143	1	35.121	34.621	35.621	-0.021763								0	0	0	0.34404	1	2667	2667		74.255	6.7614	1				69045	756	48415	48494	75111	75111					0.06031992020314192
RQITAQQI	8	Unmodified	_RQITAQQI_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2778015136719	2	479.277441	956.540328	-0.42713	-0.00020471	0.25648	0.00012293	-0.17065	-8.1787E-05	479.2775048541474	35.131	0.74738	35.175	34.634	35.381	0.04406					46	19	4	0	0	0	0.50717	3	2622	2611;2622;2633		84.916	20.708	1	4068000			69046	756	48415	48494	75112;75113;75114	75113					0.06031992020314192
RQIVSVNR	8	Unmodified	_RQIVSVNR_					0	0	0			REV__ENST00000433094.1_1_20:46994536-46995317:+|nuORF	REV__ENST00000433094.1_1_20:46994536-46995317:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2908020019531	2	486.290882	970.567212	-0.20209	-9.8273E-05	-0.1548	-7.5277E-05	-0.35689	-0.00017355	486.2908179982032	25.155	0.74506	25.235	24.961	25.706	0.08009					32	17	2	0	0	0	0.73796	1	1115	1115		64.207	0	1	4891200	+		69047	32394	48416	48495	75115	75115					0.08075100631515397
RQKERKPIRGF	11	Unmodified	_RQKERKPIRGF_					0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2839050292969	3	472.28451	1413.8317	0.73946	0.00034924	-2.5258	-0.0011929	-1.7864	-0.00084367	472.28334357115943	100.41	0.48051	100.4	100.14	100.62	-0.0050812					24	11	3	0	0	0	1.0764	1	12757	12757		17.833	4.3252	1	194410	+		69048	22892	48417	48496	75116	75116					0.14133730385242416
RQKHNLKAK	9	Unmodified	_RQKHNLKAK_					0	0	0			REV__ENST00000511141.1_1_4:153717696-153717858:-|nuORF	REV__ENST00000511141.1_1_4:153717696-153717858:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.8458251953125	2	561.846356	1121.67816	0.62451	0.00035088	-1.745	-0.00098044	-1.1205	-0.00062956	561.8452346011154	95.499	1.1193	95.376	95.029	96.148	-0.12251					80	25	4	0	0	0	0.90698	1	11779	11779		31.955	0.42505	1	1450600	+		69049	34115	48418	48497	75117	75117					0.12218740339585565
RQKLADVA	8	Unmodified	_RQKLADVA_					0	0	0		ENSG00000104529|ENST00000618139|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.76678466796875	2	450.766709	899.518865	0.059998	2.7045E-05	-0.50959	-0.00022971	-0.44959	-0.00020266	450.7664617180392	35.299	0.74337	35.084	34.753	35.496	-0.21555					57	18	4	0	0	0	0.56067	1	2675	2675		79.939	0	1	8007400			69050	2579	48419	48498	75118	75118					0.06508606991599208
RQKLGPTGG	9	Unmodified	_RQKLGPTGG_					0	0	0		ENST00000600479.5_1_19:40871764-40872336:+|nuORF;ENST00000392032.6_1_19:40871764-40872391:+|nuORF	ENST00000600479.5_1_19:40871764-40872336:+|nuORF	ENST00000600479.5_1_19:40871764-40872336:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26324462890625	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.87448	1	10127	10127		34.173	3.6689	1	2920900			69051	13405	48420	48499	75119	75119					0.05435722848869773
RQKLSEVR	8	Unmodified	_RQKLSEVR_					0	0	0			REV__ENSG00000254550|ENST00000529803|OMP	REV__ENSG00000254550|ENST00000529803|OMP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3036193847656	2	508.30399	1014.59343	-0.56885	-0.00028915	-0.97208	-0.00049411	-1.5409	-0.00078326	508.30381095689006	26.178	1.9952	26.178	25.694	27.689	0					146	46	6	0	0	0	0.68164	1	1382	1382		68.787	3.3214	1	77267000	+		69052	29055	48421	48500	75120	75120					0.08671369802993922
RQKLYSQLK	9	Unmodified	_RQKLYSQLK_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3472900390625	2	582.348397	1162.68224	4.0239	0.0023433	-4.4824	-0.0026103	-0.45848	-0.00026699	582.3458053873856	18.548	0.6388	18.611	18.402	19.041	0.063307					28	12	3	0	0	0	0.45795	1	259	259		62.107	16.135	1	75730	+		69053	26602	48422	48501	75121	75121					0.107407850426398
RQKLYSQLK	9	Unmodified	_RQKLYSQLK_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.3486938476562	2	582.348397	1162.68224	-0.43752	-0.00025479	0.45994	0.00026785	0.022424	1.3058E-05	582.3485311566254	18.687	0.59348	18.484	18.262	18.856	-0.20371					26	11	4	0	0	0	0.50848	1	325	325		58.782	7.4465	1	322730	+		69054	26602	48422	48501	75122	75122					0.107407850426398
RQKQEEESL	9	Unmodified	_RQKQEEESL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.791259765625	2	573.791109	1145.56767	-1.7849	-0.0010242	1.464	0.00084005	-0.3209	-0.00018413	573.7919479721929	21.122	1.0186	21.122	20.753	21.771	0					57	20	5	0	0	0	0.32811	2	631	606;631		71.877	0	1	1302600			69055	3944	48423	48502	75123;75124	75124					0.0007043077005164378
RQKQEEESL	9	Unmodified	_RQKQEEESL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.791015625	2	573.791109	1145.56767	-0.37932	-0.00021765	0.0055684	3.1951E-06	-0.37375	-0.00021445	573.7911426527779	21.219	0.77684	21.128	20.814	21.591	-0.090094					50	15	5	0	0	0	0.10174	2	614	614;625		110.12	16.992	1	1400900			69056	3944	48423	48502	75125;75126	75125					0.0007043077005164378
RQKRNKIP	8	Unmodified	_RQKRNKIP_					0	0	0		nc|ENSG00000116260|O00391-2|QSOX1;ENSG00000116260|ENST00000367602|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2737426757812	2	520.327799	1038.64105	-1.9497	-0.0010145	2.7319	0.0014215	0.78224	0.00040702	520.3291197138566	38.21	0.33722	38.238	38.092	38.429	0.027275					15	9	2	0	0	0	0.027866	1	3134	3134		33.516	0	1	133130			69057	3540	48424	48503	75127	75127					0.12327068793842955
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.6464538574219	3	483.646776	1447.9185	-0.10584	-5.1187E-05	-0.58038	-0.0002807	-0.68622	-0.00033189	483.64639228958447	46.97	1.5774	46.97	46.733	48.311	0					192	45	5	0	0	0	1.0902	1	4675	4675		6.3209	0	1	8088100	+		69058	21666	48425	48504	75128	75128					0.21245574450313143
RQLAHEAR	8	Unmodified	_RQLAHEAR_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.8118591308594	2	490.772857	979.531161	-0.098544	-4.8363E-05	2.9944	0.0014696	2.8958	0.0014212	490.77414731668	25.666	0.61266	25.496	25.122	25.735	-0.17078					28	14	3	0	0	0	0.027866	1	1212	1212		29.15	0	1	273290	+		69059	25475	48426	48505	75129	75129					0.040576434546551354
RQLAHEAR	8	Unmodified	_RQLAHEAR_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.8120422363281	2	490.772857	979.531161	-0.52563	-0.00025797	3.0595	0.0015015	2.5339	0.0012436	490.7741757031878	25.76	0.58385	25.588	25.241	25.825	-0.17151					30	13	4	0	0	0	0.027866	1	1215	1215		51.335	0	1	280490	+		69060	25475	48426	48505	75130	75130					0.040576434546551354
RQLDAEIKA	9	Unmodified	_RQLDAEIKA_					0	0	0		nc|ENSG00000105875|A4D1P6-3|WDR91;ENST00000466182.5_1_7:134882699-134896254:-|nuORF;nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91	nc|ENSG00000105875|A4D1P6-3|WDR91	nc|ENSG00000105875|A4D1P6-3|WDR91	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2958984375	2	522.29583	1042.57711	0.11682	6.1016E-05	-0.11253	-5.8773E-05	0.0042953	2.2434E-06	522.2953515954422	33.484	1.2628	33.541	32.916	34.179	0.056568					54	32	3	0	0	0	0.67244	1	2390	2390		47.96	6.5329	1	1318900			69061	2732	48427	48506	75131	75131					0.057522438462456194
RQLDFNSSKD	10	Unmodified	_RQLDFNSSKD_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MSMS	OPSCC_39_ClassI_Rep-3	3	605.3011474609375	2	605.296559	1208.57856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.31	1	104.31	103.81	104.81	-0.0032196								0	0	0	0.7553	1	13310	13310		27.047	0.25122	1				69062	3916	48428	48507	75132	75132					-0.017381668556708973
RQLEAIVRI	9	Unmodified	_RQLEAIVRI_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3432006835938	2	549.343115	1096.67168	-0.84962	-0.00046673	0.16639	9.1404E-05	-0.68323	-0.00037533	549.3431951898418	50.102	1.5547	50.102	49.768	51.323	0					146	44	5	0	0	0	0.013065	5	5200	5200;5211;5223;5236;5248		171.53	29.662	1	14249000			69063	2171	48429	48508	75133;75134;75135;75136;75137	75133					0.1272080238820763
RQLEAIVRI	9	Unmodified	_RQLEAIVRI_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3427124023438	2	549.343115	1096.67168	-0.50965	-0.00027997	-0.10517	-5.7776E-05	-0.61482	-0.00033775	549.343048020331	50.297	1.726	50.146	49.781	51.507	-0.1512					149	49	5	0	0	0	0.01388	5	5206	5206;5216;5229;5242;5254		180.87	39.349	1	12840000			69064	2171	48429	48508	75138;75139;75140;75141;75142	75138					0.1272080238820763
RQLEAIVRI	9	Unmodified	_RQLEAIVRI_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3428344726562	2	549.343115	1096.67168	-0.58385	-0.00032073	-0.011763	-6.4618E-06	-0.59561	-0.00032719	549.3431126946429	49.987	1.7346	50.068	49.737	51.472	0.080994					144	49	5	0	0	0	0.013924	5	5147	5113;5123;5135;5147;5161		167.23	25.708	1	13877000			69065	2171	48429	48508	75143;75144;75145;75146;75147	75146					0.1272080238820763
RQLGLPTAL	9	Unmodified	_RQLGLPTAL_					0	0	0		ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	ENSG00000053372|ENST00000330263|MRTO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7980651855469	2	484.798009	967.581465	1.4645	0.00071001	-2.4093	-0.001168	-0.94471	-0.00045799	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.67687	1	6744	6744		47.657	5.1829	1	119110000			69066	1159	48430	48509	75148	75148					0.09637753059791976
RQLGPDGVL	9	Unmodified	_RQLGPDGVL_					0	0	0		ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7719421386719	2	477.771991	953.529429	0.028757	1.3739E-05	-1.234	-0.00058958	-1.2053	-0.00057584	477.77165265647795	44.795	1.3627	44.795	44.151	45.514	0					117	39	5	0	0	0	0.39228	1	4293	4293		66.429	6.311	1	12803000			69067	17385	48431	48510	75149	75149					0.05080589646047429
RQLHPGSG	8	Unmodified	_RQLHPGSG_					0	0	0			REV__ENST00000350796.7_1_7:6203005-6203218:-|nuORF	REV__ENST00000350796.7_1_7:6203005-6203218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.2710266113281	2	426.227751	850.440949	-0.9173	-0.00039098	-3.8791	-0.0016534	-4.7964	-0.0020444	426.2260038287083	39.41	0.17773	39.312	39.163	39.341	-0.098751					5	4	2	0	0	0	0.027866	1	3345	3345		18.324	0	1	57684	+		69068	30730	48432	48511	75150	75150					0.009745941262508495
RQLILPAL	8	Unmodified	_RQLILPAL_					0	0	0		ENST00000530903.1_1_11:126073315-126075741:-|nuORF;nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.3062438964844	2	462.30547	922.596387	0.31075	0.00014366	0.27904	0.000129	0.58979	0.00027266	462.3053922999407	66.188	1.8839	66.188	65.566	67.45	0					87	51	4	0	0	0	0.85409	1	7906	7906		54.765	0	1	5917800			69069	7427	48433	48512	75151	75151					0.13199244927784548
RQLILPAL	8	Unmodified	_RQLILPAL_					0	0	0		ENST00000530903.1_1_11:126073315-126075741:-|nuORF;nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.3072814941406	2	462.30547	922.596387	-0.19751	-9.1312E-05	0.40477	0.00018713	0.20726	9.5816E-05	462.30555111744115	66.53	1.9994	66.248	65.56	67.559	-0.28149					97	55	2	0	0	0	0.95417	1	7921	7921		44.531	0	1	4900700			69070	7427	48433	48512	75152	75152					0.13199244927784548
RQLILPAL	8	Unmodified	_RQLILPAL_					0	0	0		ENST00000530903.1_1_11:126073315-126075741:-|nuORF;nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.3050537109375	2	462.30547	922.596387	0.33111	0.00015307	-0.16818	-7.7751E-05	0.16293	7.5323E-05	462.305248326146	66.247	2.0939	66.277	65.624	67.718	0.030106					101	55	4	0	0	0	0.61897	3	7799	7799;7807;7826		74.517	0	1	6320400			69071	7427	48433	48512	75153;75154;75155	75153					0.13199244927784548
RQLLLPLVLPL	11	Unmodified	_RQLLLPLVLPL_					0	0	0		ENST00000323570.7_1_4:141445319-141445430:+|nuORF	ENST00000323570.7_1_4:141445319-141445430:+|nuORF	ENST00000323570.7_1_4:141445319-141445430:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.77496337890625	3	425.623469	1273.84858	0.18249	7.7672E-05	0.12659	5.3879E-05	0.30908	0.00013155	425.9576356724753	42.11	0.13024	42.136	42.056	42.186	0.026012					6	3	2	0	0	0	0.02486	1	3790	3790		12.957	6.9564	1	76030			69072	12240	48434	48513	75156	75156					0.22260838218494428
RQLLWLELLRR	11	Unmodified	_RQLLWLELLRR_					0	0	0		ENST00000313755.9_1_22:18900690-18907344:-|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH	ENST00000313755.9_1_22:18900690-18907344:-|nuORF	ENST00000313755.9_1_22:18900690-18907344:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7961120605469	3	499.312177	1494.9147	0.8262	0.00041253	-3.7305	-0.0018627	-2.9043	-0.0014502	499.3104171426748	18.312	0.34297	18.156	17.904	18.247	-0.15637					10	6	2	0	0	0	0.024846	1	271	271		16.53	0	1	29488			69073	2121	48435	48514	75157	75157					0.1870404711323772
RQLNEVLSI	9	Unmodified	_RQLNEVLSI_					0	0	0		ENST00000527431.1_1_11:9406310-9430044:+|nuORF	ENST00000527431.1_1_11:9406310-9430044:+|nuORF	ENST00000527431.1_1_11:9406310-9430044:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3119506835938	2	536.31148	1070.60841	0.59805	0.00032074	-0.10153	-5.4451E-05	0.49652	0.00026629	536.3114599438708	59.499	1.1573	59.299	58.708	59.866	-0.20016					83	29	4	0	0	0	0.48817	1	6772	6772		60.118	3.3972	1	13592000			69074	16155	48436	48515	75158	75158					0.07592816880332975
RQLPSSHAL	9	Unmodified	_RQLPSSHAL_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5;ENST00000460863.1_1_2:114500256-114501404:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7828674316406	2	504.78289	1007.55123	-0.57005	-0.00028775	0.14539	7.3388E-05	-0.42467	-0.00021436	504.7827624317601	30.591	1.1738	30.6	30.247	31.42	0.0086708					49	27	4	0	0	0	0.39228	1	1967	1967		66.429	13.078	1	1195800			69075	3406	48437	48516	75159	75159					0.047753943946077015
RQLPSSHAL	9	Unmodified	_RQLPSSHAL_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5;ENST00000460863.1_1_2:114500256-114501404:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7822570800781	2	504.78289	1007.55123	-0.80911	-0.00040843	0.39763	0.00020072	-0.41148	-0.00020771	504.78292018232867	30.282	0.57941	30.356	30.087	30.667	0.074314					29	13	3	0	0	0	0.15366	1	1886	1886		98.629	29.002	1	1332900			69076	3406	48437	48516	75160	75160					0.047753943946077015
RQLPSSHAL	9	Unmodified	_RQLPSSHAL_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5;ENST00000460863.1_1_2:114500256-114501404:-|nuORF;nc|ENSG00000115084|Q8WV83-2|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.78289	1007.55123	-1.2383	-0.00062507	0.82799	0.00041795	-0.41031	-0.00020712	504.78314092280243	30.667	0.6183	30.667	30.343	30.961	0	0.12587	0.00037254	NaN	98.629	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1084700			69077	3406	48437	48516							0.047753943946077015
RQLQDRLGV	9	Unmodified	_RQLQDRLGV_					0	0	0			REV__ENST00000294829.4_1_1:212798075-212798207:+|nuORF	REV__ENST00000294829.4_1_1:212798075-212798207:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.814453125	2	542.814722	1083.61489	-1.7798	-0.00096609	1.4315	0.00077702	-0.34831	-0.00018907	542.8154250042096	30.038	0.73472	30.038	29.732	30.467	0					48	17	4	0	0	0	0.26966	1	1892	1892		79.713	6.8333	1	1570400	+		69078	29968	48438	48517	75161	75161					0.07642754831704224
RQLRRRWFHH	10	Unmodified	_RQLRRRWFHH_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7961120605469	3	497.948343	1490.8232	0.64679	0.00032207	4.3711	0.0021766	5.0179	0.0024986	497.9506409030376	18.545	0.69102	18.389	18.002	18.693	-0.15637					27	13	3	0	0	0	0.03519	1	271	271		11.636	2.4241	1	53491			69079	8891	48439	48518	75162	75162					0.09742221259284634
RQLRSLVV	8	Unmodified	_RQLRSLVV_					0	0	0		ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.81268310546875	2	485.811451	969.608348	0.44711	0.00021721	1.8346	0.00089128	2.2817	0.0011085	485.812378927826	89.075	2.2057	89.054	88.737	90.943	-0.021645					101	52	5	0	0	0	0.71833	1	11230	11230		65.803	12.452	1	7668000			69080	6060	48440	48519	75163	75163					0.12232861670997863
RQLSPPSD	8	Unmodified	_RQLSPPSD_					0	0	0			REV__nc|ENSG00000037280|P35916-1|FLT4	REV__nc|ENSG00000037280|P35916-1|FLT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2742614746094	2	450.232699	898.450845	-0.16403	-7.3851E-05	-2.0512	-0.00092352	-2.2152	-0.00099737	450.2330558253591	92.318	0.36035	92.195	92.062	92.423	-0.12241					17	8	3	0	0	0	0.027866	1	11355	11355		27.882	11.409	1	118680	+		69081	20068	48441	48520	75164	75164					-0.0024426265905503897
RQLVDLVM	8	Unmodified	_RQLVDLVM_					0	0	0		ENST00000599418.1_1_19:39437110-39437239:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	ENST00000599418.1_1_19:39437110-39437239:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.278076171875	2	487.278595	972.542637	-0.73803	-0.00035963	-0.90782	-0.00044236	-1.6458	-0.00080199	487.2779840490791	40.399	0.84658	40.25	39.969	40.816	-0.1497					50	22	3	0	0	0	0.56067	1	3488	3488		79.939	16.633	1	2438600			69082	10995	48442	48521	75165	75165					0.0552670443378247
RQLVFNEI	8	Unmodified	_RQLVFNEI_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MSMS	OPSCC_39_ClassI_Rep-1	1	509.78497314453125	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.639	1	57.639	57.139	58.139	0								0	0	0	0.50654	1	6495	6495		54.776	5.3348	1				69083	4815	48443	48522	75166	75166					0.05265162680132107
RQLVFNEI	8	Unmodified	_RQLVFNEI_					0	0	0		nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	nc|ENSG00000134644|Q14671-4|PUM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.785888671875	2	509.787641	1017.56073	0.083505	4.257E-05	3.1025	0.0015816	3.186	0.0016242	509.78786717027975	57.7	0.59554	57.526	57.229	57.825	-0.1749					44	15	5	0	0	0	0.50717	2	6485	6485;6497		84.916	13.62	1	2690500			69084	4815	48443	48522	75167;75168	75167					0.05265162680132107
RQMEKDETV	9	Oxidation (M)	_RQM(Oxidation (M))EKDETV_		RQM(1)EKDETV		RQM(42)EKDETV	0	0	1		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.2718505859375	2	576.271695	1150.52884	2.1662	0.0012483	-2.4127	-0.0013904	-0.2465	-0.00014205	576.2701101959849	18.046	0.63616	18.046	17.844	18.48	0					20	12	3	0	0	0	0.75397	1	242	242		42.396	6.7778	1	179830			69085	1617	48444	48523	75169	75169		58			-0.04040617856003337
RQMEKDETV	9	Oxidation (M)	_RQM(Oxidation (M))EKDETV_					0	0	1		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	576.271695	1150.52884	0.18157	0.00010464	-0.32042	-0.00018465	-0.13884	-8.0011E-05	576.2713360814791	18.257	0.83448	18.126	17.908	18.743	-0.13147	0.039612	0.0012284	NaN	42.396	23	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124310			69086	1617	48444	48523				58			-0.04040617856003337
RQMEKDETV	9	Unmodified	_RQMEKDETV_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.2742919921875	2	568.274238	1134.53392	-1.1648	-0.00066195	1.0407	0.00059143	-0.1241	-7.052E-05	568.2746581844552	21.888	0.66096	21.888	21.584	22.245	0					29	13	3	0	0	0	0.6238	1	723	723		51.193	6.8155	1	300540			69087	1617	48444	48524	75170	75170					-0.027963139933717684
RQMEKDETV	9	Unmodified	_RQMEKDETV_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.2738037109375	2	568.274238	1134.53392	-0.51789	-0.00029431	0.19023	0.0001081	-0.32766	-0.0001862	568.2743598700338	21.976	0.5722	21.901	21.651	22.223	-0.075296					33	11	4	0	0	0	0.34489	1	723	723		69.628	16.691	1	332000			69088	1617	48444	48524	75171	75171					-0.027963139933717684
RQMSGAQI	8	Oxidation (M)	_RQM(Oxidation (M))SGAQI_		RQM(1)SGAQI		RQM(85)SGAQI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.7264709472656	2	453.726726	905.4389	-0.020798	-9.4367E-06	0.085499	3.8793E-05	0.064701	2.9356E-05	453.726669718416	23.693	2.8536	23.693	22.432	25.285	0					118	65	2	0	0	0	0.50717	1	969	969		84.916	8.1414	1	509040			69089	7950;9954	48445	48525	75172	75172		329			-0.017602026738813947
RQNASWKK	8	Unmodified	_RQNASWKK_					0	0	0			REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.2828063964844	2	509.283057	1016.55156	-0.011859	-6.0395E-06	-0.50582	-0.00025761	-0.51768	-0.00026364	509.28265821430625	20.193	0.9715	20.025	19.473	20.444	-0.16774					33	19	3	0	0	0	0.93274	1	530	530		47.916	0	1	276650	+		69090	29815	48446	48526	75173	75173					0.043948141144596775
RQNASWKK	8	Unmodified	_RQNASWKK_					0	0	0			REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	509.283057	1016.55156	-0.011859	-6.0395E-06	-0.50582	-0.00025761	-0.51768	-0.00026364	509.28265821430625	20.193	0.9715	20.025	19.473	20.444	-0.16774	-0.048122	-6.4868E-05	NaN	47.916	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276650	+		69091	29815	48446	48526							0.043948141144596775
RQNASWKK	8	Unmodified	_RQNASWKK_					0	0	0			REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.283057	1016.55156	0.84102	0.00042832	-0.81638	-0.00041577	0.024637	1.2547E-05	509.2823247851146	20.312	0.8761	20.116	19.559	20.435	-0.19577	0.04338	-0.00038119	NaN	47.916	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246790	+		69092	29815	48446	48526							0.043948141144596775
RQNASWKK	8	Unmodified	_RQNASWKK_					0	0	0			REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	REV__ENST00000272793.9_1_2:170780601-170782220:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.283057	1016.55156	0.053706	2.7352E-05	-0.12564	-6.3985E-05	-0.071932	-3.6634E-05	509.28277805786644	20.301	0.78425	20.078	19.68	20.464	-0.22344	0.0047413	0.00032237	NaN	47.916	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238450	+		69093	29815	48446	48526							0.043948141144596775
RQNWEEADSM	10	Unmodified	_RQNWEEADSM_					0	0	0		ENSG00000131323|ENST00000392745|TRAF3;nc|ENSG00000131323|Q13114-2|TRAF3	ENSG00000131323|ENST00000392745|TRAF3	ENSG00000131323|ENST00000392745|TRAF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5135803222656	3	422.512026	1264.51425	-0.52472	-0.0002217	2.2628	0.00095606	1.7381	0.00073435	422.5135125886904	32.05	1.6521	32.05	31.669	33.321	0					165	42	7	0	0	0	1.0728	1	2195	2195		36.318	8.6737	1	32149000			69094	4510	48447	48527	75174	75174					-0.10742690004121869
RQPDGPLG	8	Unmodified	_RQPDGPLG_					0	0	0		ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR	ENSG00000171105|ENST00000302850|INSR	ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	419.5777893066406	2	420.222134	838.429715	0.43831	0.00018419	0.95335	0.00040062	1.3917	0.00058481	420.22190880014557	21.136	0.59025	21.208	20.762	21.352	0.071487					14	11	2	0	0	0	0.027866	1	595	595		15.642	0	1	14727			69095	8111	48448	48528	75175	75175					0.004037720320980043
RQPDSGISSI	10	Unmodified	_RQPDSGISSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.275390625	2	530.275095	1058.53564	-0.44773	-0.00023742	0.34473	0.0001828	-0.10301	-5.4622E-05	530.2752029723864	40.329	1.3021	40.329	40.024	41.326	0					75	36	3	0	0	0	0.32213	2	3542	3542;3556		106.68	16.082	1	10749000			69096	7168	48449	48529	75176;75177	75176					0.008710630869245506
RQPDSGISSI	10	Unmodified	_RQPDSGISSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.275390625	2	530.275095	1058.53564	0.049176	2.6077E-05	0.045673	2.4219E-05	0.094849	5.0296E-05	530.2750344849765	40.419	1.2224	40.307	39.978	41.2	-0.11223					74	32	3	0	0	0	0.52143	2	3548	3548;3562		85.862	5.4072	1	9148300			69097	7168	48449	48529	75178;75179	75178					0.008710630869245506
RQPDSGISSI	10	Unmodified	_RQPDSGISSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2747802734375	2	530.275095	1058.53564	-0.7111	-0.00037708	0.58669	0.00031111	-0.12441	-6.5974E-05	530.2752887925428	40.497	0.94408	40.52	40.275	41.219	0.023006					77	26	4	0	0	0	0.42599	2	3522	3480;3522		96.034	5.4327	1	9755200			69098	7168	48449	48529	75180;75181	75181					0.008710630869245506
RQPELPEVI	9	Unmodified	_RQPELPEVI_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8062133789062	2	540.806031	1079.59751	0.52722	0.00028512	-0.73389	-0.00039689	-0.20666	-0.00011177	540.8055389815946	59.829	1.2482	59.829	59.408	60.656	0					80	33	5	0	0	0	0.64897	1	6825	6825		49.536	7.1399	1	7931700			69099	38096	48450	48530	75182	75182					0.060894145060501614
RQPELPEVI	9	Unmodified	_RQPELPEVI_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;CTNND1|p.D848Efs*9|1|0.1|ENSG00000198561|chr11:57810216-57810217|-/AAAAAGCTTAGACC|frameshift_variant;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;CTNND1|p.D848Gfs*19|1|0.1|ENSG00000198561|chr11:57810214-57810215|-/G|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	540.806031	1079.59751	-1.1773	-0.00063669	1.1304	0.00061132	-0.046922	-2.5376E-05	540.806492624299	59.697	1.7213	59.783	59.351	61.073	0.085686					118	45	5	0	0	0	0.5973	1	6755	6755		52.937	3.4007	1	5853600			69100	38096	48450	48530	75183	75183					0.060894145060501614
RQPGPGRW	8	Unmodified	_RQPGPGRW_					0	0	0			REV__ENST00000530209.5_1_11:770899-772585:-|nuORF	REV__ENST00000530209.5_1_11:770899-772585:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.2927551269531	2	477.256843	952.499132	-0.012967	-6.1886E-06	-2.297	-0.0010963	-2.31	-0.0011025	477.2553787325531	46.676	0.68243	46.728	46.342	47.024	0.051395					30	18	2	0	0	0	0.027866	1	4602	4602		25.45	12.491	1	256320	+		69101	34531	48451	48531	75184	75184					0.02098275771504632
RQPGPGRW	8	Unmodified	_RQPGPGRW_					0	0	0			REV__ENST00000530209.5_1_11:770899-772585:-|nuORF	REV__ENST00000530209.5_1_11:770899-772585:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.256843	952.499132	-0.35276	-0.00016836	-2.4303	-0.0011599	-2.7831	-0.0013282	477.2548834430783	46.792	0.47858	46.599	46.481	46.959	-0.19387	-0.064601	-8.9181E-05	NaN	33.516	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203970	+		69102	34531	48451	48531							0.02098275771504632
RQPPTVTKI	9	Unmodified	_RQPPTVTKI_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.316650390625	2	520.316566	1038.61858	-0.83275	-0.00043329	-0.62713	-0.0003263	-1.4599	-0.0007596	520.3157638664376	31.89	1.4411	31.89	31.386	32.827	0					64	36	3	0	0	0	0.14181	1	2163	2163		101.25	19.012	1	1812000			69103	6691	48452	48532	75185	75185					0.10081424605550637
RQPPTVTKI	9	Unmodified	_RQPPTVTKI_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3164672851562	2	520.316566	1038.61858	-0.49575	-0.00025794	-0.60567	-0.00031514	-1.1014	-0.00057308	520.3155433504686	31.811	1.0388	31.823	31.299	32.338	0.011797					74	25	6	0	0	0	0.1158	1	2133	2133		107.01	27.295	1	1821400			69104	6691	48452	48532	75186	75186					0.10081424605550637
RQPPTVTKI	9	Unmodified	_RQPPTVTKI_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3168334960938	2	520.316566	1038.61858	-0.59941	-0.00031188	0.10008	5.2073E-05	-0.49933	-0.00025981	520.3164572710722	31.582	1.2819	31.651	31.04	32.321	0.068962					56	31	3	0	0	0	0.30449	2	2072	2072;2084		75.043	16.261	1	1692500			69105	6691	48452	48532	75187;75188	75187					0.10081424605550637
RQPRKKQP	8	Unmodified	_RQPRKKQP_					0	0	0		ENSG00000048342|ENST00000424120|CC2D2A;ENST00000513811.5_1_4:15471657-15545375:+|nuORF;ENST00000514450.2_1_4:15471657-15513157:+|nuORF;nc|ENSG00000048342|Q9P2K1-6|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.80029296875	2	519.319974	1036.6254	-0.026859	-1.3949E-05	1.4657	0.00076115	1.4388	0.00074721	519.3205829354664	52.224	0.84277	52.076	51.915	52.758	-0.14735					39	21	2	0	0	0	0.027866	1	5540	5540		24.203	1.1603	1	1333200			69106	1114	48453	48533	75189	75189					0.10854782276783226
RQPRPFAVRLN	11	Unmodified	_RQPRPFAVRLN_					0	0	0			REV__ENST00000511217.1_1_5:145442260-145458084:+|nuORF	REV__ENST00000511217.1_1_5:145442260-145458084:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.93280029296875	3	451.933588	1352.77894	1.0842	0.00048999	-2.9151	-0.0013174	-1.8309	-0.00082742	451.9321198523276	96.984	2.193	96.984	95.823	98.016	-3.0518E-05					156	50	4	0	0	0	1.0563	1	12398	12398		23.378	0.81632	1	556020	+		69107	34117	48454	48534	75190	75190					0.11665772322453449
RQPYNAIF	8	Unmodified	_RQPYNAIF_					0	0	0		nc|ENSG00000101773|Q99708-2|RBBP8;ENSG00000101773|ENST00000327155|RBBP8	nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-2|RBBP8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7668762207031	2	504.766709	1007.51886	-0.76406	-0.00038567	-0.013426	-6.7768E-06	-0.77748	-0.00039245	504.7667349447106	66.188	1.6607	65.975	64.888	66.549	-0.21328					139	41	6	0	0	0	0.61897	1	7570	7570		74.517	7.0229	1	21357000			69108	2348	48455	48535	75191	75191					0.015406069916025444
RQQAFPDHS	9	Unmodified	_RQQAFPDHS_					0	0	0			REV__nc|ENSG00000137275|Q13546-2|RIPK1	REV__nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2630615234375	2	543.259779	1084.50501	-0.21216	-0.00011526	4.0192	0.0021835	3.807	0.0020682	543.2619570337159	70.725	0.58098	70.511	70.288	70.869	-0.21425					20	15	2	0	0	0	0.96322	1	8232	8232		27.882	5.9224	1	784820	+		69109	23746	48456	48536	75192	75192					-0.033866705074842685
RQQAGLHR	8	Unmodified	_RQQAGLHR_					0	0	0			REV__ENSG00000120896|ENST00000240123|SORBS3	REV__ENSG00000120896|ENST00000240123|SORBS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.27532958984375	2	483.273024	964.531495	-0.48015	-0.00023204	2.7272	0.001318	2.2471	0.001086	483.27438669767264	64.538	0.64067	64.583	64.335	64.975	0.045502					53	16	4	0	0	0	0.74904	1	7515	7515		63.306	4.5243	1	2551300	+		69110	22565	48457	48537	75193	75193					0.047810631745164756
RQQARLKGRIN	11	Unmodified	_RQQARLKGRIN_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.27349853515625	3	447.272493	1338.79565	0.11818	5.2859E-05	0.88774	0.00039706	1.0059	0.00044992	447.27278940417534	106.28	1.1364	106.16	105.64	106.77	-0.1238					111	43	5	0	0	0	1.0739	1	13240	13240		18.531	0	1	2232400	+		69111	28150	48458	48538	75194	75194					0.13980273208426297
RQQQQQQQQQR	11	Unmodified	_RQQQQQQQQQR_					0	0	0			REV__ENSG00000204442|ENST00000375915|NALF1	REV__ENSG00000204442|ENST00000375915|NALF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2914733886719	3	495.253938	1482.73998	0.22292	0.0001104	2.8932	0.0014329	3.1162	0.0015433	495.2554877028273	18.46	0.44607	18.256	18.014	18.46	-0.20371					12	8	2	0	0	0	0.024759	1	318	318		36.318	9.2703	1	20328	+		69112	28606	48459	48539	75195	75195					0.017923952301316604
RQRAASVAR	9	Unmodified	_RQRAASVAR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF;REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3117370605469	2	507.799406	1013.58426	0.94937	0.00048209	-1.0001	-0.00050784	-0.050704	-2.5748E-05	508.3001569282796	63.04	1.2233	63.095	62.76	63.983	0.054104					46	32	2	0	0	0	0.02435	1	7322	7322		42.396	0	1	1873400	+		69113	34973;20921	48460	48540	75196	75196					0.07801021237321493
RQRAASVAR	9	Unmodified	_RQRAASVAR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF;REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.799406	1013.58426	0.018597	9.4435E-06	2.4988	0.0012689	2.5174	0.0012783	507.800287841557	63.244	0.47648	63.023	62.858	63.335	-0.22097	-0.023724	0.0014759	NaN	54.776	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265890	+		69114	34973;20921	48460	48540							0.07801021237321493
RQRAASVAR	9	Unmodified	_RQRAASVAR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF;REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.799406	1013.58426	-0.34224	-0.00017379	1.5183	0.00077099	1.1761	0.0005972	507.79992531262513	63.22	0.36017	63.036	62.873	63.233	-0.18386	-0.010495	0.00048016	NaN	54.776	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184510	+		69115	34973;20921	48460	48540							0.07801021237321493
RQRAASVAR	9	Unmodified	_RQRAASVAR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF;REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.799406	1013.58426	0.12752	6.4752E-05	1.4419	0.00073218	1.5694	0.00079693	507.8001177711423	63.279	0.3535	63.021	62.96	63.313	-0.25824	-0.025944	0.00040254	NaN	54.776	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286200	+		69116	34973;20921	48460	48540							0.07801021237321493
RQRAEAER	8	Unmodified	_RQRAEAER_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	2	508.273221	1014.53189	-0.47578	-0.00024182	2.3566	0.0011978	1.8808	0.00095596	508.2745379000261	26.343	0.2043	26.343	26.243	26.447	0					6	4	2	0	0	0	0.027866	1	1331	1331		74.255	16.025	1	144430			69117	18548	48461	48541	75197	75197					0.025204381037042367
RQRAKKYTL	9	Unmodified	_RQRAKKYTL_					0	0	0		nc|ENSG00000166317|Q9H987-2|SYNPO2L;ENSG00000166317|ENST00000394810|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3530883789062	2	582.354014	1162.69348	0.23222	0.00013523	-1.1864	-0.0006909	-0.95417	-0.00055567	582.3532009393155	102.38	1.4655	102.25	101.9	103.36	-0.12931					112	34	7	0	0	0	0.91321	1	12750	12750		31.53	8.4873	1	8525700			69118	7540	48462	48542	75198	75198					0.11863607136797327
RQRDPNPP	8	Unmodified	_RQRDPNPP_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.25799560546875	2	490.25704	978.499526	-0.12543	-6.1494E-05	1.9518	0.00095689	1.8264	0.00089539	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.97924	1	13393	13393		40.573	4.9543	1	7056700	+		69119	22714	48463	48543	75199	75199					0.009416507007017572
RQRETPSPP	9	Unmodified	_RQRETPSPP_					0	0	0		ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2843627929688	2	534.283254	1066.55196	-0.25133	-0.00013428	1.7764	0.0009491	1.5251	0.00081482	534.2842429890858	107.92	0.62953	107.8	107.52	108.15	-0.12389					68	32	3	0	0	0	0.52323	1	13393	13393		57.811	17.033	1	2774900			69120	16872	48464	48544	75200	75200					0.021341890436588073
RQRETPSPP	9	Unmodified	_RQRETPSPP_					0	0	0		ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.283254	1066.55196	0.62526	0.00033407	0.87207	0.00046593	1.4973	0.0008	534.2837304668656	107.7	0.19203	107.7	107.61	107.8	0	-0.052901	-0.0010863	NaN	57.811	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1341600			69121	16872	48464	48544							0.021341890436588073
RQRETPSPP	9	Unmodified	_RQRETPSPP_					0	0	0		ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	534.283254	1066.55196	0.19585	0.00010464	0.91985	0.00049146	1.1157	0.0005961	534.2835576790933	107.97	0.66961	107.82	107.48	108.15	-0.15439	0.069847	-0.0010353	NaN	57.811	64	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2851500			69122	16872	48464	48544							0.021341890436588073
RQRKGRDTG	9	Unmodified	_RQRKGRDTG_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MSMS	OPSCC_39_ClassI_Rep-2	2	537.2975463867188	2	537.29977	1072.58499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.126	1	19.007	18.507	19.507	-0.11872								0	0	0	0.59141	1	363	363		40.778	7.9657	1				69123	5936	48465	48545	75201	75201					0.051598158863725985
RQRKLVSPPTG	11	Unmodified	_RQRKLVSPPTG_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.869384765625	2	619.870028	1237.7255	0.12405	7.6895E-05	-1.3693	-0.00084877	-1.2452	-0.00077188	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0238	1	11434	11434		31.53	3.4483	1	1596200	+		69124	21180	48466	48546	75202	75202					0.11614974819917734
RQRKWRPSI	9	Unmodified	_RQRKWRPSI_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.2300720214844	3	409.579146	1225.71561	0.28179	0.00011541	-1.0562	-0.00043261	-0.77444	-0.0003172	409.91324483933977	25.096	0.32937	25.096	24.919	25.248	0					12	7	2	0	0	0	0.0245	1	1129	1129		16.717	0.18753	1	42036			69125	3554	48467	48547	75203	75203					0.11177831605232313
RQRKWRPSI	9	Unmodified	_RQRKWRPSI_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	409.579146	1225.71561	-0.48444	-0.00019842	0.50983	0.00020881	0.025381	1.0396E-05	409.5792292746839	25.151	0.43979	25.116	24.992	25.432	-0.034395	0.00010131	0.0015608	NaN	16.717	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44458			69126	3554	48467	48547							0.11177831605232313
RQRKWRPSI	9	Unmodified	_RQRKWRPSI_					0	0	0		ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	ENSG00000116544|ENST00000373347|DLGAP3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	409.579146	1225.71561	1.219	0.00049926	-2.3071	-0.00094492	-1.0881	-0.00044566	409.5782520698048	25.056	0.33339	25.137	24.961	25.294	0.08009	0.020222	-0.0019004	NaN	16.717	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44046			69127	3554	48467	48547							0.11177831605232313
RQRQQQQLRL	10	Unmodified	_RQRQQQQLRL_					0	0	0			REV__ENST00000473467.5_1_2:74685729-74687181:+|nuORF	REV__ENST00000473467.5_1_2:74685729-74687181:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.932861328125	3	451.932248	1352.77491	-0.033263	-1.5033E-05	0.89189	0.00040308	0.85863	0.00038804	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.1314	1	12211	12211		27.047	1.9795	1	1141700	+		69128	28954	48468	48548	75204	75204					0.11263682828735
RQRVQEQV	8	Unmodified	_RQRVQEQV_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1;PKP1|p.E365Gfs*47|1|0.21|ENSG00000081277|chr1:201318654-201318655|-/GG|frameshift_variant	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.791259765625	2	521.791247	1041.56794	-0.11657	-6.0827E-05	-0.54315	-0.00028341	-0.65972	-0.00034424	521.7910647563884	21.201	1.4047	21.272	20.91	22.314	0.071487					84	28	8	0	0	0	0.6248	2	581	571;581		73.975	7.1458	1	2356100			69129	18093	48469	48549	75205;75206	75206					0.0488189528057319
RQSCELFNSF	10	Unmodified	_RQSCELFNSF_					0	0	0			REV__ENSG00000169508|ENST00000376414|GPR183	REV__ENSG00000169508|ENST00000376414|GPR183	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.8583679199219	3	410.857245	1229.54991	-0.55338	-0.00022736	1.8498	0.00076002	1.2965	0.00053266	410.85837937410065	30.245	0.88529	30.066	29.74	30.625	-0.17817					41	20	3	0	0	0	0.98527	1	1920	1920		47.96	2.9373	1	1478300	+		69130	26374	48470	48550	75207	75207					-0.05568607756458732
RQSELGSVL	9	Unmodified	_RQSELGSVL_					0	0	0			REV__ENST00000477081.1_1_17:59485297-59485864:+|nuORF	REV__ENST00000477081.1_1_17:59485297-59485864:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.77496337890625	2	494.774731	987.534909	0.52407	0.00025929	-0.28726	-0.00014213	0.23681	0.00011717	494.77452513173665	49.638	0.48122	49.638	49.287	49.768	0					44	12	5	0	0	0	0.2101	1	5144	5144		87.696	5.4559	1	6330000	+		69131	22579	48471	48551	75208	75208					0.04064268437866758
RQSISKALV	9	Unmodified	_RQSISKALV_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.30889892578125	2	501.308741	1000.60293	-0.33289	-0.00016688	-0.3169	-0.00015887	-0.64979	-0.00032574	501.3085548594992	32.129	0.62462	32.129	31.869	32.494	0					43	15	4	0	0	0	0.31037	2	2197	2197;2209		74.255	16.444	1	3702800			69132	2642	48472	48552	75209;75210	75209					0.10265138088504955
RQSISKALV	9	Unmodified	_RQSISKALV_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.3086242675781	2	501.308741	1000.60293	-0.47453	-0.00023788	-0.13779	-6.9076E-05	-0.61232	-0.00030696	501.3086477298238	32.033	0.63033	32.045	31.782	32.413	0.011799					44	15	4	0	0	0	0.42604	1	2163	2163		64.207	0	1	3571000			69133	2642	48472	48552	75211	75211					0.10265138088504955
RQSISKALV	9	Unmodified	_RQSISKALV_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.30877685546875	2	501.308741	1000.60293	-0.31066	-0.00015574	-0.38065	-0.00019082	-0.69131	-0.00034656	501.30848642154956	31.877	0.5976	31.946	31.686	32.284	0.068962					45	14	4	0	0	0	0.42604	1	2107	2107		64.207	8.7031	1	3003000			69134	2642	48472	48552	75212	75212					0.10265138088504955
RQSLEGLSV	9	Unmodified	_RQSLEGLSV_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.77423095703125	2	494.774731	987.534909	-1.1316	-0.0005599	1.3059	0.00064612	0.17426	8.6219E-05	494.7753427019882	49.521	0.4522	49.595	49.316	49.768	0.074196					40	11	5	0	0	0	0.32064	1	5041	5041		72.879	5.3856	1	5860400			69135	2607	48473	48553	75213	75213					0.040642684378553895
RQSLLFLT	8	Unmodified	_RQSLLFLT_					0	0	0		nc|ENSG00000151694|P78536-2|ADAM17;ENSG00000151694|ENST00000310823|ADAM17;ADAM17-ITGB1BP1|2|fusion;ENST00000478059.1_1_2:9667906-9695734:-|nuORF;ADAM17-ITGB1BP1|1|fusion	nc|ENSG00000151694|P78536-2|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.29302978515625	2	489.292559	976.570566	-0.28462	-0.00013926	1.1853	0.00057994	0.90064	0.00044068	489.2929976411419	66.475	0.59512	66.193	65.904	66.499	-0.28148					43	19	3	0	0	0	0.83003	1	7875	7875		56.721	5.3856	1	6168800			69136	6223	48474	48554	75214	75214					0.0813435068552053
RQSSLELQL	9	Unmodified	_RQSSLELQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.3013916015625	2	537.301113	1072.58767	-0.74758	-0.00040167	1.0875	0.00058429	0.33988	0.00018262	537.3014783639504	56.627	0.95418	56.627	56.351	57.305	0					58	26	4	0	0	0	0.40693	1	6316	6316		65.465	1.2581	1	4015900			69137	9358	48475	48555	75215	75215					0.054282265006804664
RQSSLELQL	9	Unmodified	_RQSSLELQL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3007202148438	2	537.301113	1072.58767	-1.0878	-0.00058449	2.2544	0.0012113	1.1666	0.00062683	537.3024056668389	56.432	1.2851	56.53	55.999	57.284	0.097893					64	35	4	0	0	0	0.22902	1	6204	6204		85.161	0.2453	1	3334600			69138	9358	48475	48555	75216	75216					0.054282265006804664
RQSSSSLIL	9	Unmodified	_RQSSSSLIL_					0	0	0			REV__nc|ENSG00000108231|O95970-3|LGI1	REV__nc|ENSG00000108231|O95970-3|LGI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.78033447265625	2	495.782556	989.550559	-0.82428	-0.00040866	-3.1617	-0.0015675	-3.9859	-0.0019762	495.78081246261854	89.189	0.87708	89.027	88.638	89.515	-0.1626					61	20	4	0	0	0	0.33245	3	10907	10883;10895;10907		71.296	5.4925	1	1360000	+		69139	21717	48476	48556	75217;75218;75219	75219					0.05536554954926487
RQSSSSLIL	9	Unmodified	_RQSSSSLIL_					0	0	0			REV__nc|ENSG00000108231|O95970-3|LGI1	REV__nc|ENSG00000108231|O95970-3|LGI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7804260253906	2	495.782556	989.550559	-0.16296	-8.0795E-05	-3.8624	-0.0019149	-4.0254	-0.0019957	495.78043976460424	89.154	0.75505	89.027	88.701	89.456	-0.12775					47	17	3	0	0	0	0.25032	1	10909	10909		82.305	2.3658	1	1711000	+		69140	21717	48476	48556	75220	75220					0.05536554954926487
RQSSSSLIL	9	Unmodified	_RQSSSSLIL_					0	0	0			REV__nc|ENSG00000108231|O95970-3|LGI1	REV__nc|ENSG00000108231|O95970-3|LGI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.78033447265625	2	495.782556	989.550559	0.07506	3.7214E-05	-4.0693	-0.0020175	-3.9942	-0.0019802	495.7803095269077	89.193	0.88331	89.055	88.649	89.532	-0.13761					59	20	4	0	0	0	0.27161	3	10887	10876;10887;10900		79.451	13.648	1	1590200	+		69141	21717	48476	48556	75221;75222;75223	75222					0.05536554954926487
RQTPALGL	8	Unmodified	_RQTPALGL_					0	0	0		ENST00000380649.7_1_2:26413987-26414122:-|nuORF	ENST00000380649.7_1_2:26413987-26414122:-|nuORF	ENST00000380649.7_1_2:26413987-26414122:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2561340332031	2	428.255977	854.497401	0.01273	5.4517E-06	-0.25974	-0.00011123	-0.24701	-0.00010578	428.2558642379249	44.491	1.0625	44.528	44.241	45.304	0.036903					84	30	5	0	0	0	0.87148	1	4193	4193		53.351	0	1	13284000			69142	13316	48477	48557	75224	75224					0.0643322196290228
RQTPKAGL	8	Unmodified	_RQTPKAGL_					0	0	0		ENST00000326019.10_1_2:27886341-27886545:+|nuORF	ENST00000326019.10_1_2:27886341-27886545:+|nuORF	ENST00000326019.10_1_2:27886341-27886545:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.7628479003906	2	435.761426	869.5083	0.19447	8.4742E-05	-0.39573	-0.00017244	-0.20126	-8.7701E-05	435.76112408297274	36.571	1.603	36.571	36.029	37.632	0					66	43	2	0	0	0	0.96769	1	2936	2936		42.396	1.618	1	3547400			69143	12277	48478	48558	75225	75225					0.0683262433717573
RQTSLVTF	8	Unmodified	_RQTSLVTF_					0	0	0		ENST00000413133.6_1_8:38314980-38316493:-|nuORF	ENST00000413133.6_1_8:38314980-38316493:-|nuORF	ENST00000413133.6_1_8:38314980-38316493:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2671813964844	2	476.266542	950.51853	0.23064	0.00010985	-0.87967	-0.00041896	-0.64903	-0.00030911	476.2661721293344	31.667	1.3792	31.426	31.073	32.452	-0.24109					107	33	5	0	0	0	0.6536	1	2152	2152		71.296	5.4925	1	26303000			69144	13836	48479	48559	75226	75226					0.04129187271769297
RQTTKPGI	8	Unmodified	_RQTTKPGI_					0	0	0		ENST00000525823.1_2_11:111781393-111781609:-|nuORF	ENST00000525823.1_2_11:111781393-111781609:-|nuORF	ENST00000525823.1_2_11:111781393-111781609:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7671203613281	2	450.766709	899.518865	-0.50458	-0.00022745	-0.052206	-2.3533E-05	-0.55678	-0.00025098	450.7666834549954	35.226	0.84675	35.039	34.641	35.488	-0.18675					66	21	5	0	0	0	0.56592	1	2622	2622		79.451	2.6769	1	7562200			69145	16103	48480	48560	75227	75227					0.06508606991610577
RQTVAVGV	8	Unmodified	_RQTVAVGV_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.24847412109375	2	415.248152	828.481751	-0.23383	-9.7097E-05	0.052651	2.1863E-05	-0.18118	-7.5233E-05	415.24819602679423	35.905	1.3177	35.905	35.57	36.887	0					101	35	5	0	0	0	0.38451	2	2778	2778;2813		99.375	17.16	1	20766000			69146	2295	48481	48561	75228;75229	75228					0.060649354458519156
RQTVAVGV	8	Unmodified	_RQTVAVGV_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2483215332031	2	415.248152	828.481751	-0.74758	-0.00031043	0.6482	0.00026917	-0.099381	-4.1268E-05	415.2484510520065	35.786	1.2836	35.744	35.366	36.649	-0.042458					86	34	4	0	0	0	0.27053	3	2761	2741;2749;2761		124.59	21.821	1	19276000			69147	2295	48481	48561	75230;75231;75232	75232					0.060649354458519156
RQTVAVGV	8	Unmodified	_RQTVAVGV_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.24835205078125	2	415.248152	828.481751	-0.36506	-0.00015159	0.1891	7.8525E-05	-0.17596	-7.3068E-05	415.2482658171454	35.798	1.589	35.842	35.497	37.086	0.044056					107	42	5	0	0	0	0.27053	4	2716	2705;2716;2728;2740		124.59	22.994	1	17837000			69148	2295	48481	48561	75233;75234;75235;75236	75234					0.060649354458519156
RQTVAVGVI	9	Unmodified	_RQTVAVGVI_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.79010009765625	2	471.790184	941.565815	0.082764	3.9047E-05	-0.97161	-0.00045839	-0.88884	-0.00041935	471.7897649574988	47.919	1.4407	47.919	47.529	48.969	0					126	42	5	0	0	0	0.23085	3	4838	4838;4850;4875		84.916	10.66	1	49165000			69149	2295	48482	48562	75237;75238;75239	75237					0.0926946654275298
RQTVAVGVI	9	Unmodified	_RQTVAVGVI_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.78936767578125	2	471.790184	941.565815	-0.17756	-8.377E-05	-0.71055	-0.00033523	-0.8881	-0.000419	471.7898810981659	48.025	1.9384	47.872	47.542	49.48	-0.15301					138	55	4	0	0	0	0.23085	3	4844	4821;4844;4868		84.916	6.311	1	48595000			69150	2295	48482	48562	75240;75241;75242	75241					0.0926946654275298
RQTVAVGVI	9	Unmodified	_RQTVAVGVI_					0	0	0		ENST00000436459.2_1_9:135895553-135896258:+|nuORF;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000567658.1_1_16:27144806-27145163:-|nuORF;ENST00000547505.2_1_12:44054544-44054901:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	ENST00000436459.2_1_9:135895553-135896258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.78997802734375	2	471.790184	941.565815	-0.2047	-9.6575E-05	-0.54393	-0.00025662	-0.74863	-0.0003532	471.7899415927755	47.76	1.308	47.819	47.554	48.862	0.059097					114	37	5	0	0	0	0.16468	1	4787	4787		96.19	13.95	1	46020000			69151	2295	48482	48562	75243	75243					0.0926946654275298
RQTYFLPVI	9	Unmodified	_RQTYFLPVI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8260498046875	2	568.826766	1135.63898	0.53533	0.00030451	-0.52601	-0.00029921	0.009327	5.3055E-06	568.8263418510251	74.552	1.1516	74.552	74.042	75.194	0					83	27	4	0	0	0	0.72875	2	9127	9127;9139		44.117	8.4985	1	2759100			69152	7485	48483	48563	75244;75245	75244					0.07658595265365875
RQTYFLPVI	9	Unmodified	_RQTYFLPVI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8263549804688	2	568.826766	1135.63898	0.093131	5.2975E-05	-0.12612	-7.1741E-05	-0.03299	-1.8766E-05	568.8265667246868	74.797	1.2606	74.538	74.028	75.289	-0.25887					86	30	4	0	0	0	0.59099	1	9125	9125		53.351	5.6941	1	2711700			69153	7485	48483	48563	75246	75246					0.07658595265365875
RQTYFLPVI	9	Unmodified	_RQTYFLPVI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.8259887695312	2	568.826766	1135.63898	-1.1643	-0.0006623	1.0521	0.00059846	-0.11222	-6.3831E-05	568.8272441605869	74.638	1.1544	74.648	74.095	75.249	0.0096512					80	27	4	0	0	0	0.53979	1	9054	9054		56.721	23.909	1	2491800			69154	7485	48483	48563	75247	75247					0.07658595265365875
RQVASHVGL	9	Unmodified	_RQVASHVGL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.77960205078125	2	483.777608	965.540663	-1.2082	-0.00058449	1.8465	0.00089331	0.63836	0.00030883	483.7785851210954	29.293	1.1097	29.293	28.947	30.057	0					86	27	4	0	0	0	0.26966	5	1776	1766;1776;1788;1800;1814		79.713	30.138	1	10893000			69155	3025	48484	48564	75248;75249;75250;75251;75252	75249					0.05651411740200274
RQVASHVGL	9	Unmodified	_RQVASHVGL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.77978515625	2	483.777608	965.540663	-0.60425	-0.00029232	1.2859	0.00062211	0.68169	0.00032979	483.7783014314685	29.28	0.98277	29.283	29.014	29.997	0.0031376					69	24	4	0	0	0	0.16468	2	1760	1760;1785		96.19	27.404	1	10605000			69156	3025	48484	48564	75253;75254	75253					0.05651411740200274
RQVASHVGL	9	Unmodified	_RQVASHVGL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.77960205078125	2	483.777608	965.540663	-0.56781	-0.00027469	-0.034411	-1.6647E-05	-0.60222	-0.00029134	483.77768007774193	29.069	0.93736	29.147	28.865	29.802	0.078344					68	23	4	0	0	0	0.16468	4	1687	1687;1696;1708;1720		96.19	35.218	1	10903000			69157	3025	48484	48564	75255;75256;75257;75258	75255					0.05651411740200274
RQVEHIVATT	10	Unmodified	_RQVEHIVATT_					0	0	0			REV__nc|ENSG00000100197|P10635-2|CYP2D6	REV__nc|ENSG00000100197|P10635-2|CYP2D6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	578.3058471679688	2	577.319837	1152.62512	-0.035357	-2.0412E-05	-3.3963	-0.0019608	-3.4317	-0.0019812	577.3177793585469	75.582	0.57317	75.592	75.288	75.861	0.010376					24	15	2	0	0	0	0.03519	1	9228	9228		39.253	20.928	1	323640	+		69158	21062	48485	48565	75259	75259					0.054913177662683665
RQVETKVR	8	Unmodified	_RQVETKVR_					0	0	0		nc|ENSG00000183889|E9PKD4-2|NPIPA5;nc|ENSG00000254852|F8WFD2|NPIPA3;ENSG00000183793|ENST00000360151|NPIPA5;ENSG00000183426|ENST00000328085|NPIPA1;ENSG00000254852|ENST00000529166|NPIPA2;ENSG00000233024|ENST00000427999|NPIPA9;ENSG00000224712|ENST00000531598|NPIPA3;ENSG00000214967|ENST00000530217|NPIPA7;ENSG00000214940|ENST00000525596|NPIPA8;ENSG00000183889|ENST00000381497|NPIPA9	nc|ENSG00000183889|E9PKD4-2|NPIPA5	nc|ENSG00000183889|E9PKD4-2|NPIPA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3034973144531	2	508.30399	1014.59343	-0.56752	-0.00028847	-1.0697	-0.00054374	-1.6372	-0.00083221	508.30375317172104	26.205	2.0458	26.182	25.864	27.91	-0.023088					152	51	6	0	0	0	0.36844	1	1321	1321		101.6	3.0187	1	77525000			69159	9228	48486	48566	75260	75260					0.08671369802993922
RQVKLVNI	8	Unmodified	_RQVKLVNI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L755Ffs*10|1|0.41|ENSG00000178209|chr8:143932523-143932524|-/A|frameshift_variant;PLEC|p.G497Wfs*30|1|0.35|ENSG00000178209|chr8:143934410-143934411|-/G|frameshift_variant;ENST00000521821.1_1_6:56535374-56707943:-|nuORF;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;ENSG00000127603|ENST00000564288|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;MACF1|p.I3234*|1|0.07|ENSG00000127603|chr1:39336271-39336271|A/-|frameshift_variant;MACF1|p.S3424Rfs*15|1|0.1|ENSG00000127603|chr1:39340539-39340563|TCAGTCAGGAGCTGGAGTGTGTGAA/-|frameshift_variant;MACF1|p.V2543Pfs*6|1|0.06|ENSG00000127603|chr1:39334199-39334200|-/CCTCT|frameshift_variant;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000178209|Q15149|PLEC;ENSG00000151914|ENST00000680361|DST;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.31292724609375	2	485.313826	968.613099	0.071989	3.4937E-05	-1.1428	-0.00055463	-1.0708	-0.0005197	485.31328019992156	40.081	1.6608	40.081	39.771	41.432	0					123	46	5	0	0	0	0.71833	1	3477	3477		65.803	4.8312	1	27095000			69160	4256;6240;18548;18250	48487	48567	75261	75261					0.12753745813768091
RQVKVILN	8	Unmodified	_RQVKVILN_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.31134033203125	2	485.313826	968.613099	-0.73355	-0.000356	0.35686	0.00017319	-0.37669	-0.00018281	485.3138184753033	44.155	1.6502	44.192	43.923	45.573	0.036903					127	47	5	0	0	0	0.845	1	4171	4171		55.504	5.4797	1	37463000			69161	10186	48488	48568	75262	75262					0.12753745813756723
RQVLLGDQI	9	Unmodified	_RQVLLGDQI_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.3063354492188	2	521.306198	1040.59784	-0.78146	-0.00040738	1.5309	0.00079807	0.74945	0.00039069	521.3075774927855	53.133	0.98209	53.133	52.673	53.655	0					69	26	4	0	0	0	0.17845	1	5714	5714		93.143	10.903	1	7460800			69162	5564	48489	48569	75263	75263					0.07916834225898128
RQVLLGDQI	9	Unmodified	_RQVLLGDQI_					0	0	0		ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENSG00000142507|ENST00000270586|PSMB6	ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.3062744140625	2	521.306198	1040.59784	-0.35696	-0.00018609	0.74916	0.00039054	0.3922	0.00020446	521.3070563253126	52.973	0.76561	53.069	52.753	53.518	0.095669					69	20	5	0	0	0	0.12914	2	5617	5617;5626		104.06	8.0609	1	8191600			69163	5564	48489	48569	75264;75265	75264					0.07916834225898128
RQVQGSEI	8	Unmodified	_RQVQGSEI_					0	0	0		ENST00000526204.5_1_8:145650010-145650409:-|nuORF;ENST00000526977.5_1_8:145650235-145651211:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28;ENST00000528142.5_1_8:145649272-145651551:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.7454528808594	2	458.745973	915.477394	0.090848	4.1676E-05	-0.77434	-0.00035523	-0.68349	-0.00031355	458.74556865426786	26.469	1.1229	26.469	26.163	27.286	0					88	27	5	0	0	0	0.25873	4	1341	1341;1349;1361;1376		129.68	37.492	1	5454000			69164	6850	48490	48570	75266;75267;75268;75269	75266					0.016274262322895083
RQVQGSEI	8	Unmodified	_RQVQGSEI_					0	0	0		ENST00000526204.5_1_8:145650010-145650409:-|nuORF;ENST00000526977.5_1_8:145650235-145651211:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28;ENST00000528142.5_1_8:145649272-145651551:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7458190917969	2	458.745973	915.477394	-0.32962	-0.00015121	-0.42248	-0.00019381	-0.75209	-0.00034502	458.74575428907775	26.448	1.1408	26.425	26.164	27.304	-0.023088					74	28	4	0	0	0	0.25873	3	1339	1328;1339;1351		129.68	33.492	1	5679200			69165	6850	48490	48570	75270;75271;75272	75271					0.016274262322895083
RQVQGSEI	8	Unmodified	_RQVQGSEI_					0	0	0		ENST00000526204.5_1_8:145650010-145650409:-|nuORF;ENST00000526977.5_1_8:145650235-145651211:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28;ENST00000528142.5_1_8:145649272-145651551:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.7459716796875	2	458.745973	915.477394	0.30797	0.00014128	-0.54897	-0.00025184	-0.241	-0.00011056	458.74569713932664	26.112	1.3435	26.193	25.793	27.136	0.081293					79	32	4	0	0	0	0.18427	3	1243	1243;1253;1266		143.11	46.916	1	4678400			69166	6850	48490	48570	75273;75274;75275	75273					0.016274262322895083
RQVTGVTRV	9	Unmodified	_RQVTGVTRV_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3029479980469	2	508.30399	1014.59343	-0.56885	-0.00028915	-0.97208	-0.00049411	-1.5409	-0.00078326	508.30381095689006	26.178	1.9952	26.178	25.694	27.689	0					146	46	6	0	0	0	0.086035	5	1283	1283;1307;1343;1357;1370		115.49	25.124	1	77267000			69167	9888	48491	48571	75276;75277;75278;75279;75280	75276					0.08671369803005291
RQVTGVTRV	9	Unmodified	_RQVTGVTRV_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3034973144531	2	508.30399	1014.59343	-0.56752	-0.00028847	-1.0697	-0.00054374	-1.6372	-0.00083221	508.30375317172104	26.205	2.0458	26.182	25.864	27.91	-0.023088					152	51	6	0	0	0	0.086035	5	1333	1285;1309;1333;1347;1361		115.49	13.893	1	77525000			69168	9888	48491	48571	75281;75282;75283;75284;75285	75283					0.08671369803005291
RQVTGVTRV	9	Unmodified	_RQVTGVTRV_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.30377197265625	2	508.30399	1014.59343	-0.029451	-1.497E-05	-1.7887	-0.00090921	-1.8182	-0.00092418	508.30340766595833	26.03	1.7409	26.111	25.793	27.534	0.081293					138	43	6	0	0	0	0.086035	6	1289	1228;1240;1252;1264;1289;1304		115.49	25.124	1	77932000			69169	9888	48491	48571	75286;75287;75288;75289;75290;75291	75290					0.08671369803005291
RQVVATQTK	9	Unmodified	_RQVVATQTK_					0	0	0			REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.8087768554688	2	515.803823	1029.59309	4.7982	0.0024749	2.0103	0.0010369	6.8085	0.0035118	515.8047477323729	17.517	0.33339	17.578	17.353	17.686	0.06036					15	10	2	0	0	0	0.98697	1	144	144		23.042	3.6825	1	21029	+		69170	23294	48492	48572	75292	75292					0.07947950083121214
RQVVATQTK	9	Unmodified	_RQVVATQTK_					0	0	0			REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.803823	1029.59309	3.2305	0.0016663	3.8669	0.0019946	7.0975	0.0036609	515.8057404670411	17.364	0.39659	17.364	17.151	17.548	0	-0.10683	0.0012963	NaN	23.042	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22286	+		69171	23294	48492	48572							0.07947950083121214
RQVVATQTK	9	Unmodified	_RQVVATQTK_					0	0	0			REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	REV__ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	515.803823	1029.59309	4.7982	0.0024749	2.0103	0.0010369	6.8085	0.0035118	515.8047477323729	17.517	0.33339	17.578	17.353	17.686	0.06036	0.10683	-0.00061909	NaN	23.042	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21029	+		69172	23294	48492	48572							0.07947950083121214
RQWAPCNSEG	10	Carbamidomethyl (C)	_RQWAPC(Carbamidomethyl (C))NSEG_	RQWAPC(1)NSEG		RQWAPC(74)NSEG		0	1	0		ENSG00000204851|ENST00000599531|PNMA8B;nc|ENSG00000204851|Q9ULN7-1|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	ENSG00000204851|ENST00000599531|PNMA8B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	602.7603149414062	2	602.761829	1203.5091	-0.39361	-0.00023725	-1.9934	-0.0012015	-2.387	-0.0014388	602.7602976699451	57.933	0.62313	57.7	57.386	58.009	-0.23363					40	15	4	0	0	0	0.62431	1	6369	6369		74.255	17.534	1	4205800			69173	10383	48493	48573	75293	75293	147				-0.08450949076086545
RQWDYTEKL	9	Unmodified	_RQWDYTEKL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8109741210938	2	619.811845	1237.60914	-0.41669	-0.00025827	-0.068441	-4.2421E-05	-0.48514	-0.00030069	619.8117468861877	46.006	0.87367	46.006	45.714	46.587	0					73	24	4	0	0	0	0.013442	3	4515	4515;4527;4541		177.3	86.935	1	5027400			69174	9358	48494	48574	75294;75295;75296	75294					-0.0001638847061258275
RQWDYTEKL	9	Unmodified	_RQWDYTEKL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8115234375	2	619.811845	1237.60914	-0.82591	-0.00051191	0.60158	0.00037286	-0.22434	-0.00013905	619.8121247839767	46.153	0.90421	46.002	45.683	46.587	-0.15157					71	25	4	0	0	0	0.014478	3	4529	4517;4529;4540		164.46	51.043	1	4140200			69175	9358	48494	48574	75297;75298;75299	75298					-0.0001638847061258275
RQWDYTEKL	9	Unmodified	_RQWDYTEKL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8114013671875	2	619.811845	1237.60914	-0.80684	-0.00050009	0.70079	0.00043436	-0.10605	-6.573E-05	619.8121756302528	46.058	0.89167	46.11	45.83	46.721	0.051399					77	25	5	0	0	0	0.012922	2	4472	4472;4483		172.25	73.236	1	3962900			69176	9358	48494	48574	75300;75301	75300					-0.0001638847061258275
RQYDIDDAI	9	Unmodified	_RQYDIDDAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.7664794921875	2	554.767103	1107.51965	-0.087585	-4.8589E-05	-1.6399	-0.00090977	-1.7275	-0.00095836	554.7668093445258	53.309	1.2	53.309	53.049	54.249	0					62	33	4	0	0	0	0.6238	2	5765	5752;5765		51.193	3.5354	1	4253300			69177	18548	48495	48575	75302;75303	75303					-0.029806431500219333
RQYFQEIGL	9	Unmodified	_RQYFQEIGL_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	577.3034057617188	2	577.303655	1152.59276	0.2973	0.00017163	-0.58653	-0.00033861	-0.28924	-0.00016698	577.3032080792482	64.007	0.61181	64.007	63.772	64.384	0					44	16	4	0	0	0	0.30449	2	7520	7520;7533		75.043	2.0283	1	1585800			69178	3035	48496	48576	75304;75305	75304					0.02256530363274578
RQYFQEIGL	9	Unmodified	_RQYFQEIGL_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.3030395507812	2	577.303655	1152.59276	-0.35072	-0.00020247	0.29447	0.00017	-0.05625	-3.2473E-05	577.3037479371127	64.244	0.65627	63.985	63.651	64.308	-0.25876					42	17	3	0	0	0	0.51687	1	7525	7525		58.23	7.0372	1	1627500			69179	3035	48496	48576	75306	75306					0.02256530363274578
RQYFQEIGL	9	Unmodified	_RQYFQEIGL_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	577.3030395507812	2	577.303655	1152.59276	0.98935	0.00057115	-1.1993	-0.00069233	-0.20991	-0.00012118	577.3028448223042	64.027	0.61968	64.073	63.867	64.486	0.045502					39	16	3	0	0	0	0.45795	2	7448	7437;7448		62.107	10.915	1	1449600			69180	3035	48496	48576	75307;75308	75308					0.02256530363274578
RQYHENIKI	9	Unmodified	_RQYHENIKI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.8875732421875	3	400.887645	1199.64111	1.8693	0.00074939	-1.5356	-0.00061558	0.33377	0.0001338	400.8869573948657	30.267	1.2926	30.341	29.879	31.171	0.074314					78	30	4	0	0	0	0.10464	2	1885	1872;1885		109.48	10.465	1	1724500			69181	9882	48497	48577	75309;75310	75310					0.049270240031546564
RQYHENIKI	9	Unmodified	_RQYHENIKI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.886474609375	3	400.887645	1199.64111	0.2219	8.8957E-05	-3.1228	-0.0012519	-2.9009	-0.0011629	400.8863614964882	54.888	1.6862	54.742	54.459	56.145	-0.14609					112	45	5	0	0	0	0.57016	2	5844	5844;5866		54.722	4.8922	1	9869200			69182	9882	48497	48577	75311;75312	75311					0.049270240031546564
RQYHENIKI	9	Unmodified	_RQYHENIKI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.8860168457031	3	400.887645	1199.64111	1.048	0.00042012	-4.0137	-0.001609	-2.9657	-0.0011889	400.88600524140026	54.997	1.2636	54.766	54.459	55.723	-0.23087					100	35	5	0	0	0	0.64897	2	5878	5857;5878		49.536	9.4779	1	11488000			69183	9882	48497	48577	75313;75314	75314					0.049270240031546564
RQYHENIKI	9	Unmodified	_RQYHENIKI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.88568115234375	3	400.887645	1199.64111	0.084969	3.4063E-05	-2.8398	-0.0011384	-2.7548	-0.0011044	400.8864471960518	54.981	1.3568	54.775	54.468	55.825	-0.20613					107	37	5	0	0	0	0.51687	1	5865	5865		58.23	11.773	1	9822100			69184	9882	48497	48577	75315	75315					0.049270240031546564
RQYHENIKI	9	Unmodified	_RQYHENIKI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	400.887645	1199.64111	0.22682	9.0928E-05	0.043459	1.7422E-05	0.27028	0.00010835	400.88763169785403	30.722	1.0439	30.722	30.384	31.428	0	0.15644	0.00073554	NaN	109.48	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2287900			69185	9882	48497	48577							0.049270240031546564
RQYKYDLV	8	Unmodified	_RQYKYDLV_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000529638.1_1_8:145139098-145139832:+|nuORF;ENST00000527653.1_1_8:145139258-145139832:+|nuORF;ENST00000454928.5_2_2:110705383-110742349:+|nuORF;ENST00000606848.1_1_2:111144305-111145031:-|nuORF;ENST00000488671.1_1_2:111144305-111181647:-|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7947387695312	2	542.792924	1083.57129	-0.31318	-0.00016999	-3.0487	-0.0016548	-3.3619	-0.0018248	542.7911465048873	40.031	0.53796	40.031	39.843	40.381	0					35	14	3	0	0	0	0.027866	1	3491	3491		71.296	33.484	1	662550			69186	10056	48498	48578	75316	75316					0.03285145334552908
RQYKYDLV	8	Unmodified	_RQYKYDLV_					0	0	0		nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000529638.1_1_8:145139098-145139832:+|nuORF;ENST00000527653.1_1_8:145139258-145139832:+|nuORF;ENST00000454928.5_2_2:110705383-110742349:+|nuORF;ENST00000606848.1_1_2:111144305-111145031:-|nuORF;ENST00000488671.1_1_2:111144305-111181647:-|nuORF	nc|ENSG00000197858|O43292-2|GPAA1	nc|ENSG00000197858|O43292-2|GPAA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.79638671875	2	542.792924	1083.57129	-1.4685	-0.00079709	-2.1687	-0.0011772	-3.6372	-0.0019743	542.7916198241124	40.279	0.60803	40.302	40.088	40.696	0.023003					27	16	2	0	0	0	0.027866	1	3464	3464		40.573	0	1	539820			69187	10056	48498	48578	75317	75317					0.03285145334552908
RQYLAIDEI	9	Unmodified	_RQYLAIDEI_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.8035278320312	2	560.803488	1119.59242	-1.0476	-0.00058752	0.59717	0.00033489	-0.45048	-0.00025263	560.8036836998868	62.003	0.76851	62.003	61.529	62.297	0					55	21	4	0	0	0	0.091713	4	7198	7187;7198;7209;7222		113.41	22.635	1	8250800			69188	2051	48499	48579	75318;75319;75320;75321	75319					0.03741110643409229
RQYLAIDEI	9	Unmodified	_RQYLAIDEI_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.8026733398438	2	560.803488	1119.59242	-0.77572	-0.00043502	0.15244	8.5491E-05	-0.62327	-0.00034953	560.8034902621753	62.222	0.92153	61.996	61.298	62.219	-0.22663					62	24	5	0	0	0	0.057894	4	7190	7190;7199;7213;7226		125.81	40.455	1	9187900			69189	2051	48499	48579	75322;75323;75324;75325	75322					0.03741110643409229
RQYLAIDEI	9	Unmodified	_RQYLAIDEI_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ITPR3|p.A2287Cfs*26|1|0.44|ENSG00000096433|chr6:33689397-33689398|-/G|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.8026733398438	2	560.803488	1119.59242	-0.9777	-0.0005483	0.2685	0.00015058	-0.7092	-0.00039772	560.8034774603398	61.927	0.82433	61.99	61.542	62.367	0.062767					62	22	5	0	0	0	0.067814	3	7107	7096;7107;7120		122.18	45.402	1	8214400			69190	2051	48499	48579	75326;75327;75328	75327					0.03741110643409229
RQYPTPFQL	9	Unmodified	_RQYPTPFQL_					0	0	0		ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3062133789062	2	575.306198	1148.59784	-1.4348	-0.00082547	0.81939	0.0004714	-0.61546	-0.00035408	575.3065751723284	63.153	0.90725	63.153	62.651	63.558	0					71	23	4	0	0	0	0.020687	4	7346	7346;7357;7371;7382		148.99	52.796	1	6156500			69191	1196	48500	48580	75329;75330;75331;75332	75329					0.029488342258900957
RQYPTPFQL	9	Unmodified	_RQYPTPFQL_					0	0	0		ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.305908203125	2	575.306198	1148.59784	-0.041925	-2.412E-05	-0.33242	-0.00019124	-0.37434	-0.00021536	575.3058893767904	63.313	0.87775	63.061	62.603	63.48	-0.25141					77	22	5	0	0	0	0.053401	4	7377	7345;7358;7377;7388		127.46	36.861	1	5296500			69192	1196	48500	48580	75333;75334;75335;75336	75335					0.029488342258900957
RQYPTPFQL	9	Unmodified	_RQYPTPFQL_					0	0	0		ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	ENSG00000056277|ENST00000370978|ZNF280C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3063354492188	2	575.306198	1148.59784	0.62624	0.00036028	-1.1519	-0.00066272	-0.5257	-0.00030244	575.305481634936	63.126	1.0219	63.18	62.64	63.662	0.054104					83	26	4	0	0	0	0.014918	4	7297	7262;7273;7287;7297		162.25	32.255	1	4828600			69193	1196	48500	48580	75337;75338;75339;75340	75340					0.029488342258900957
RQYPWGVVQV	10	Unmodified	_RQYPWGVVQV_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	616.333251953125	2	616.332747	1230.65094	-0.21134	-0.00013025	0.12023	7.4102E-05	-0.091104	-5.615E-05	616.3327678964538	65.585	0.76614	65.585	65.26	66.026	0					39	20	2	0	0	0	0.10389	3	7779	7779;7790;7803		134.81	61.932	1	3412800			69194	9557;7274	48501	48581	75341;75342;75343	75341					0.04484212008560462
RQYPWGVVQV	10	Unmodified	_RQYPWGVVQV_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	616.3333129882812	2	616.332747	1230.65094	0.0085607	5.2762E-06	-0.22475	-0.00013852	-0.21619	-0.00013324	616.3325703303454	65.933	0.81218	65.66	65.33	66.142	-0.27282					40	21	2	0	0	0	0.14896	2	7815	7802;7815		127.46	54.582	1	3044400			69195	9557;7274	48501	48581	75344;75345	75345					0.04484212008560462
RQYPWGVVQV	10	Unmodified	_RQYPWGVVQV_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	616.3331298828125	2	616.332747	1230.65094	-0.80388	-0.00049546	0.77697	0.00047887	-0.026905	-1.6582E-05	616.333171364188	65.664	0.77671	65.702	65.389	66.166	0.037384					39	20	2	0	0	0	0.31896	1	7713	7713		107.01	48.778	1	2756100			69196	9557;7274	48501	48581	75346	75346					0.04484212008560462
RRAASALLL	9	Unmodified	_RRAASALLL_					0	0	0		ENST00000545932.5_1_12:108956374-108956593:+|nuORF;ENSG00000136003|ENST00000311893|ISCU	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.8114318847656	2	485.811451	969.608348	-0.098117	-4.7666E-05	0.14316	6.9551E-05	0.045047	2.1884E-05	485.8113535059715	42.147	0.89096	42.024	41.752	42.643	-0.12299					60	23	4	0	0	0	0.88411	1	3781	3781		33.516	0	1	2102000			69197	4968	48502	48582	75347	75347					0.12232861670997863
RRADHRGSW	9	Unmodified	_RRADHRGSW_					0	0	0		ENST00000216181.9_1_22:36745290-36784030:-|nuORF	ENST00000216181.9_1_22:36745290-36784030:-|nuORF	ENST00000216181.9_1_22:36745290-36784030:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.2726440429688	2	570.792112	1139.56967	0.39532	0.00022565	0.43051	0.00024573	0.82584	0.00047138	570.7926952070289	57.015	0.54455	56.813	56.52	57.064	-0.20208					23	14	2	0	0	0	0.024447	1	6192	6192		32.812	19.358	1	311370			69198	11157	48503	48583	75348	75348					0.005469490891755413
RRAGRVLPAP	10	Unmodified	_RRAGRVLPAP_					0	0	0		ENST00000490165.5_1_X:152721060-152721751:-|nuORF	ENST00000490165.5_1_X:152721060-152721751:-|nuORF	ENST00000490165.5_1_X:152721060-152721751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8402099609375	2	546.841074	1091.66759	0.67566	0.00036948	-2.4362	-0.0013322	-1.7605	-0.00096274	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	1.1267	1	12364	12364		29.15	3.6994	1	9262700			69199	15428	48504	48584	75349	75349					0.12542757685150718
RRAKIAGG	8	Unmodified	_RRAKIAGG_					0	0	0			REV__ENST00000353341.8_1_4:83295061-83295130:-|nuORF	REV__ENST00000353341.8_1_4:83295061-83295130:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.7618713378906	2	414.761761	827.508969	0.11105	4.606E-05	-0.24165	-0.00010023	-0.1306	-5.4167E-05	414.7617867578987	110.25	0.53743	110.26	110.09	110.62	0.0059204					31	14	3	0	0	0	1.0472	1	13885	13885		29.842	8.1392	1	346340	+		69200	30743	48505	48585	75350	75350					0.08831463776891724
RRALGRPGRLQ	11	Unmodified	_RRALGRPGRLQ_					0	0	0			REV__ENST00000537726.5_1_15:80445384-80454681:+|nuORF	REV__ENST00000537726.5_1_15:80445384-80454681:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2649230957031	3	427.26545	1278.77452	-0.029898	-1.2774E-05	-2.351	-0.0010045	-2.3809	-0.0010173	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0327	1	5917	5917		29.551	6.1728	1	50736000	+		69201	34703	48506	48586	75351	75351					0.1462830789957934
RRALGRPGRLQ	11	Unmodified	_RRALGRPGRLQ_					0	0	0			REV__ENST00000537726.5_1_15:80445384-80454681:+|nuORF	REV__ENST00000537726.5_1_15:80445384-80454681:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.26446533203125	3	427.26545	1278.77452	0.50024	0.00021373	-2.9116	-0.001244	-2.4113	-0.0010303	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.0739	1	5843	5843		18.531	0.26896	1	61030000	+		69202	34703	48506	48586	75352	75352					0.1462830789957934
RRAPALTAR	9	Unmodified	_RRAPALTAR_					0	0	0		ENST00000372441.1_1_6:43477335-43478064:-|nuORF	ENST00000372441.1_1_6:43477335-43478064:-|nuORF	ENST00000372441.1_1_6:43477335-43478064:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.8241882324219	2	506.312149	1010.60975	-0.49235	-0.00024928	4.24	0.0021468	3.7476	0.0018975	506.3137800085223	43.274	0.36677	43.135	42.991	43.358	-0.13929					23	9	3	0	0	0	0.024495	1	4007	4007		19.997	3.5236	1	283410			69203	13040	48507	48587	75353	75353					0.10486495759721493
RRAPGPAR	8	Unmodified	_RRAPGPAR_					0	0	0		ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	ENST00000484115.5_1_3:49027419-49028262:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2767028808594	2	440.764835	879.515117	-0.34525	-0.00015218	-3.9254	-0.0017302	-4.2706	-0.0018823	440.76300298581776	48.588	0.64019	48.654	48.339	48.979	0.066795					24	17	2	0	0	0	0.027866	1	4891	4891		12.959	8.9739	1	96133			69204	15295	48508	48588	75354	75354					0.07053982008415005
RRAPHPLLSEA	11	Unmodified	_RRAPHPLLSEA_					0	0	0			REV__ENST00000277865.4_1_10:88836397-88854194:-|nuORF	REV__ENST00000277865.4_1_10:88836397-88854194:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.240234375	3	416.238678	1245.6942	0.13389	5.573E-05	-0.98179	-0.00040866	-0.8479	-0.00035293	416.23811644824536	41.923	2.0261	41.693	41.313	43.339	-0.23029					161	54	6	0	0	0	0.98082	1	3707	3707		41.08	0	1	28528000	+		69205	29858	48509	48589	75355	75355					0.08118401785850438
RRAPPPSA	8	Unmodified	_RRAPPPSA_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-7|AKNA	REV__nc|ENSG00000106948|Q7Z591-7|AKNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.24615478515625	2	426.245944	850.477334	-0.78622	-0.00033512	1.0262	0.00043742	0.23999	0.00010229	426.24624737716465	84.001	1.0607	84.001	83.649	84.709	0					53	24	3	0	0	0	1.0574	1	10505	10505		25.45	1.2474	1	648070	+		69206	21648	48510	48590	75356	75356					0.0461147102294035
RRAPQQHPE	9	Unmodified	_RRAPQQHPE_					0	0	0		ENST00000264036.5_1_11:119180042-119180144:-|nuORF	ENST00000264036.5_1_11:119180042-119180144:-|nuORF	ENST00000264036.5_1_11:119180042-119180144:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.7958984375	2	559.794321	1117.57409	3.4046	0.0019059	-0.45463	-0.0002545	2.95	0.0016514	559.7939020724322	16.65	0.47093	16.65	16.436	16.907	0					35	15	4	0	0	0	0.72875	1	82	82		44.117	11.304	1	216640			69207	11551	48511	48591	75357	75357					0.02000413512087107
RRAPQQHPE	9	Unmodified	_RRAPQQHPE_					0	0	0		ENST00000264036.5_1_11:119180042-119180144:-|nuORF	ENST00000264036.5_1_11:119180042-119180144:-|nuORF	ENST00000264036.5_1_11:119180042-119180144:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.794321	1117.57409	1.4613	0.00081804	1.0107	0.0005658	2.4721	0.0013838	559.7947651210972	16.742	0.25709	16.588	16.449	16.706	-0.15376	0.013363	-0.00058497	NaN	44.117	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24580			69208	11551	48511	48591							0.02000413512087107
RRAPQQHPE	9	Unmodified	_RRAPQQHPE_					0	0	0		ENST00000264036.5_1_11:119180042-119180144:-|nuORF	ENST00000264036.5_1_11:119180042-119180144:-|nuORF	ENST00000264036.5_1_11:119180042-119180144:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.794321	1117.57409	-0.1969	-0.00011022	3.1181	0.0017455	2.9212	0.0016353	559.7960737541714	16.702	0.20243	16.494	16.367	16.569	-0.20777	-0.080098	0.0017744	NaN	44.117	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30556			69209	11551	48511	48591							0.02000413512087107
RRAQQIAQLY	10	Unmodified	_RRAQQIAQLY_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2389221191406	3	416.238678	1245.6942	-0.43035	-0.00017913	-0.27363	-0.00011389	-0.70398	-0.00029302	416.23845002244616	41.89	1.6871	41.658	41.271	42.959	-0.23186					149	44	5	0	0	0	0.88978	1	3748	3748		54.722	3.1946	1	27503000			69210	1764	48512	48592	75358	75358					0.08118401785850438
RRARLQAGPRV	11	Unmodified	_RRARLQAGPRV_					0	0	0			REV__ENST00000592416.1_1_18:48722932-48722989:-|nuORF	REV__ENST00000592416.1_1_18:48722932-48722989:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.2639465332031	3	427.26545	1278.77452	0.33845	0.00014461	-2.8117	-0.0012013	-2.4732	-0.0010567	427.2643585414106	53.977	2.4471	53.78	53.422	55.869	-0.19739					232	69	6	0	0	0	1.0563	1	5751	5751		23.378	0.81632	1	46473000	+		69211	35747	48513	48593	75359	75359					0.14628307899533866
RRARRQASR	9	Unmodified	_RRARRQASR_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.8490600585938	2	578.847753	1155.68095	1.5643	0.00090552	0.58811	0.00034043	2.1525	0.0012459	578.847969062675	19.187	0.69261	18.954	18.632	19.325	-0.23345					29	13	4	0	0	0	0.98697	1	367	367		23.042	3.6825	1	405710	+		69212	36824	48514	48594	75360	75360					0.10934008517119764
RRARRQASR	9	Unmodified	_RRARRQASR_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.847753	1155.68095	-0.11156	-6.4579E-05	0.53652	0.00031056	0.42496	0.00024598	579.3493734865244	19.318	0.19751	19.318	19.168	19.366	0	0.23331	-0.0012665	NaN	23.042	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8329.9	+		69213	36824	48514	48594							0.10934008517119764
RRARRQASR	9	Unmodified	_RRARRQASR_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	578.847753	1155.68095	0.038487	2.2278E-05	2.1486	0.0012437	2.1871	0.001266	578.8489137697786	19.183	0.49434	18.983	18.761	19.255	-0.2001	-0.10211	0.00059978	NaN	23.042	27	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434440	+		69214	36824	48514	48594							0.10934008517119764
RRARRQASR	9	Unmodified	_RRARRQASR_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	578.847753	1155.68095	1.5643	0.00090552	0.58811	0.00034043	2.1525	0.0012459	578.847969062675	19.187	0.69261	18.954	18.632	19.325	-0.23345	-0.1312	-0.0012068	NaN	23.042	29	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405710	+		69215	36824	48514	48594							0.10934008517119764
RRASRRRRLRH	11	Unmodified	_RRASRRRRLRH_					0	0	0		ENST00000355815.8_1_17:17726920-17740219:-|nuORF	ENST00000355815.8_1_17:17726920-17740219:-|nuORF	ENST00000355815.8_1_17:17726920-17740219:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7926025390625	3	507.31743	1518.93046	-1.2951	-0.00065703	-1.4776	-0.0007496	-2.7727	-0.0014066	507.3162054719758	44.165	0.19365	44.165	44.12	44.314	0					6	5	2	0	0	0	0.02486	1	4213	4213		12.957	6.9564	1	332810			69216	12657	48515	48595	75361	75361					0.1917519119353983
RRAVPSRGR	9	Unmodified	_RRAVPSRGR_					0	0	0			REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7811279296875	2	527.820673	1053.62679	-1.0521	-0.00055532	-3.0108	-0.0015892	-4.0629	-0.0021445	527.8184117011858	80.873	2.1613	80.722	80.091	82.252	-0.15169					93	51	3	0	0	0	0.023454	1	10211	10211		82.241	16.437	1	622420	+		69217	33320	48516	48596	75362	75362					0.10212416365561694
RRAVPSRGR	9	Unmodified	_RRAVPSRGR_					0	0	0			REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.820673	1053.62679	-0.11843	-6.2507E-05	-4.4735	-0.0023612	-4.592	-0.0024237	527.8180307049859	80.712	0.84833	80.474	80.164	81.013	-0.23784	-0.1565	-0.00065675	NaN	82.241	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686920	+		69218	33320	48516	48596							0.10212416365561694
RRAVPSRGR	9	Unmodified	_RRAVPSRGR_					0	0	0			REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.820673	1053.62679	0.053468	2.8222E-05	-4.521	-0.0023863	-4.4676	-0.0023581	527.8178753502568	80.738	0.73847	80.532	80.257	80.996	-0.20632	-0.098938	-0.00070688	NaN	82.241	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692770	+		69219	33320	48516	48596							0.10212416365561694
RRAVPSRGR	9	Unmodified	_RRAVPSRGR_					0	0	0			REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	527.820673	1053.62679	-0.052118	-2.7509E-05	-4.254	-0.0022453	-4.3061	-0.0022728	527.8179147579245	80.622	0.98825	80.476	80.076	81.064	-0.146	-0.1547	-0.00042495	NaN	82.241	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559090	+		69220	33320	48516	48596							0.10212416365561694
RRAWQITLPDR	11	Unmodified	_RRAWQITLPDR_					0	0	0			REV__ENST00000565644.5_1_16:87864928-87865366:-|nuORF	REV__ENST00000565644.5_1_16:87864928-87865366:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.2979736328125	3	471.268748	1410.78442	-0.84542	-0.00039842	0.66851	0.00031505	-0.17691	-8.3372E-05	471.2689894001227	33.058	0.47916	32.893	32.638	33.117	-0.16565					27	11	3	0	0	0	0.024779	1	2280	2280		34.087	15.555	1	262570	+		69221	35281	48517	48597	75363	75363					0.09545451114263415
RRCGDELLV	9	Unmodified	_RRCGDELLV_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2850341796875	2	530.782033	1059.54951	0.065211	3.4613E-05	2.8769	0.001527	2.9421	0.0015616	531.285044486051	70.412	0.42789	70.412	70.316	70.744	0					12	9	2	0	0	0	0.53979	1	8519	8519		56.721	3.3696	1	1307400	+		69222	28122	48518	48598	75364	75364					0.022120173143548527
RRCRSPLA	8	Unmodified	_RRCRSPLA_					0	0	0			REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	479.771803	957.529052	1.1147	0.00053482	-2.8688	-0.0013764	-1.7541	-0.00084154	479.77009270904165	51.478	0.71434	51.366	51.051	51.765	-0.11163					23	18	2	0	0	0	0.027866	1	5270	5270		57.811	0	1	190290	+		69223	34936	48519	48599	75365	75365					0.048588914451897836
RRDEAVEP	8	Unmodified	_RRDEAVEP_					0	0	0			REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.9278564453125	2	486.24888	970.483208	-0.55761	-0.00027114	4.0034	0.0019466	3.4458	0.0016755	486.25086516833363	45.237	0.58369	45.138	44.977	45.561	-0.099445					23	16	2	0	0	0	0.027866	1	4265	4265		25.45	15.185	1	479610	+		69224	29747	48520	48600	75366	75366					-0.0032147525605523697
RRDEESVRIA	10	Unmodified	_RRDEESVRIA_					0	0	0		ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	615.8294677734375	2	615.8311	1229.64765	-0.40431	-0.00024899	-2.205	-0.0013579	-2.6093	-0.0016069	615.8296077840357	98.635	1.3876	98.635	98.317	99.704	0					78	31	3	0	0	0	1.0508	1	12634	12634		39.253	1.4413	1	905310			69225	978	48521	48601	75367	75367					0.042009171638937914
RRDEESVRIA	10	Unmodified	_RRDEESVRIA_					0	0	0		ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	615.8297119140625	2	615.8311	1229.64765	0.25455	0.00015676	-2.8212	-0.0017374	-2.5667	-0.0015806	615.8292512725548	98.587	1.4271	98.597	98.19	99.617	0.010231					87	32	3	0	0	0	0.91678	1	12564	12564		52.937	0	1	911620			69226	978	48521	48601	75368	75368					0.042009171638937914
RRDEPTSYGGY	11	Unmodified	_RRDEPTSYGGY_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7779235839844	3	434.202069	1299.58438	0.32801	0.00014242	-0.068493	-2.974E-05	0.25952	0.00011268	434.20211799103214	36.915	0.51303	36.722	36.414	36.927	-0.193					32	12	3	0	0	0	0.02477	1	2912	2912		12.433	0	1	275220	+		69227	20632	48522	48602	75369	75369					-0.05343068343995583
RRDGEHKPFTI	11	Unmodified	_RRDGEHKPFTI_					0	0	0		ENSG00000165966|ENST00000402685|PDZRN4	ENSG00000165966|ENST00000402685|PDZRN4	ENSG00000165966|ENST00000402685|PDZRN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.5654296875	3	452.57747	1354.71058	1.8704	0.00084649	-1.2776	-0.00057822	0.59277	0.00026827	452.57711859789356	19.285	0.19818	19.052	18.878	19.077	-0.23345					6	3	2	0	0	0	0.02473	1	369	369		35.496	0	1	9710.8			69228	7490	48523	48603	75370	75370					0.04741482951931175
RRDLADFTSE	10	Unmodified	_RRDLADFTSE_					0	0	0		ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	403.866798	1208.57856	0.62627	0.00025293	1.3411	0.00054161	1.9673	0.00079454	404.20188613226867	31.989	0.29894	31.753	31.611	31.91	-0.23667					8	6	2	0	0	0	0.03519	1	2177	2177		36.318	19.788	1	70755			69229	10361	48524	48604	75371	75371					-0.017381668556708973
RRDLRAGL	8	Unmodified	_RRDLRAGL_					0	0	0		ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000586439.1_1_19:36604659-36605969:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.79254150390625	2	478.79105	955.567546	0.43669	0.00020908	2.1674	0.0010377	2.6041	0.0012468	478.79185332165343	50.757	0.52334	50.757	50.544	51.067	0					43	14	4	0	0	0	0.74904	1	5354	5354		63.306	1.1989	1	6748400			69230	17243	48525	48605	75372	75372					0.08798520351354
RRDVVHST	8	Unmodified	_RRDVVHST_					0	0	0		ENST00000507394.1_1_4:100479199-100480495:-|nuORF;ENSG00000145331|ENST00000394876|TRMT10A	ENST00000507394.1_1_4:100479199-100480495:-|nuORF	ENST00000507394.1_1_4:100479199-100480495:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.26611328125	2	485.264865	968.515176	0.080531	3.9079E-05	2.4556	0.0011916	2.5362	0.0012307	485.26601739163846	68.128	1.173	67.839	67.388	68.561	-0.28834					89	29	4	0	0	0	0.6248	1	8156	8156		73.975	2.0973	1	14027000			69231	5805	48526	48606	75373	75373					0.02965937217766168
RRDVVHST	8	Unmodified	_RRDVVHST_					0	0	0		ENST00000507394.1_1_4:100479199-100480495:-|nuORF;ENSG00000145331|ENST00000394876|TRMT10A	ENST00000507394.1_1_4:100479199-100480495:-|nuORF	ENST00000507394.1_1_4:100479199-100480495:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2663879394531	2	485.264865	968.515176	0.35623	0.00017287	2.5262	0.0012259	2.8825	0.0013988	485.2660207751723	68.172	1.0412	67.938	67.555	68.596	-0.23376					54	25	3	0	0	0	0.6536	1	7882	7882		71.296	7.0884	1	4444000			69232	5805	48526	48606	75374	75374					0.02965937217766168
RRDVVPVE	8	Unmodified	_RRDVVPVE_					0	0	0			REV__ENSG00000198780|ENST00000687041|FAM169A	REV__ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.26123046875	2	485.277441	968.540328	-0.31918	-0.00015489	0.42404	0.00020577	0.10486	5.0886E-05	485.27755716506897	36.537	0.913	36.537	36.129	37.042	0					46	24	3	0	0	0	0.027866	1	2886	2886		18.324	0.95945	1	3083000	+		69233	28473	48527	48607	75375	75375					0.05479992020332247
RRDVVPVE	8	Unmodified	_RRDVVPVE_					0	0	0			REV__ENSG00000198780|ENST00000687041|FAM169A	REV__ENSG00000198780|ENST00000687041|FAM169A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2815856933594	2	485.277441	968.540328	-0.76688	-0.00037215	1.0205	0.00049523	0.25362	0.00012308	485.2779102937441	36.397	0.81631	36.355	36.032	36.849	-0.042458					55	21	4	0	0	0	0.94517	1	2879	2879		45.952	0	1	2867200	+		69234	28473	48527	48607	75376	75376					0.05479992020332247
RREEIVTE	8	Unmodified	_RREEIVTE_					0	0	0			REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.795166015625	2	516.277638	1030.54072	1.8143	0.0009367	0.024416	1.2605E-05	1.8388	0.00094931	516.2781653508365	23.475	0.85144	23.284	22.942	23.794	-0.19117					48	19	4	0	0	0	0.027866	1	969	969		31.955	0	1	380620	+		69235	23671	48528	48608	75377	75377					0.026673669495039576
RREKLYTE	8	Unmodified	_RREKLYTE_					0	0	0			REV__nc|ENSG00000163607|Q8N3Z3-2|GTPBP8	REV__nc|ENSG00000163607|Q8N3Z3-2|GTPBP8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.8025512695312	2	547.80128	1093.58801	-0.57434	-0.00031463	1.8483	0.0010125	1.274	0.0006979	547.801424815344	30.93	1.1983	30.689	30.287	31.485	-0.24109					80	29	5	0	0	0	0.98759	1	1994	1994		39.253	2.0937	1	1434400	+		69236	36853	48529	48609	75378	75378					0.044956462205163916
RRENATHI	8	Unmodified	_RRENATHI_					0	0	0			REV__nc|ENSG00000126522|P04424-3|ASL	REV__nc|ENSG00000126522|P04424-3|ASL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.771240234375	2	498.770314	995.526075	-0.0088301	-4.4042E-06	1.3648	0.00068072	1.356	0.00067631	498.77089615614955	104.88	1.8232	104.88	104.27	106.1	0.00097656					165	59	5	0	0	0	0.80469	1	13454	13454		58.782	7.5893	1	5457500	+		69237	22900	48530	48610	75379	75379					0.028133395920349358
RREQDESAF	9	Unmodified	_RREQDESAF_					0	0	0			REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2679443359375	2	569.267801	1136.52105	-0.027525	-1.5669E-05	-0.18178	-0.00010348	-0.20931	-0.00011915	569.2676179559305	24.453	1.5092	24.238	23.733	25.243	-0.2151					90	34	4	0	0	0	0.70186	1	1074	1074		45.952	1.4209	1	2498100	+		69238	35800	48531	48611	75380	75380					-0.041750090612367785
RREQDESAF	9	Unmodified	_RREQDESAF_					0	0	0			REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	REV__ENST00000597244.1_1_19:16688878-16689301:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2677001953125	2	569.267801	1136.52105	-0.033071	-1.8826E-05	-0.064416	-3.667E-05	-0.097486	-5.5496E-05	569.2676691973824	24.287	1.2505	24.113	23.743	24.993	-0.17484					80	27	5	0	0	0	0.75397	1	1005	1005		42.396	1.8235	1	2920100	+		69239	35800	48531	48611	75381	75381					-0.041750090612367785
RRERALVI	8	Unmodified	_RRERALVI_					0	0	0		ENST00000392562.5_1_17:73400926-73401187:-|nuORF	ENST00000392562.5_1_17:73400926-73401187:-|nuORF	ENST00000392562.5_1_17:73400926-73401187:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7922668457031	2	506.82235	1011.63015	-1.257	-0.00063705	-3.1068	-0.0015746	-4.3637	-0.0022116	506.82094724095964	44.087	0.17238	44.087	43.948	44.12	0					7	4	2	0	0	0	0.027866	1	4156	4156		101.21	26.695	1	108030			69240	13420	48532	48612	75382	75382					0.1247966641955145
RRESPKLL	8	Unmodified	_RRESPKLL_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.8083190917969	2	499.808908	997.603263	-0.53927	-0.00026953	0.12758	6.3765E-05	-0.41169	-0.00020577	499.80893599705723	38.081	1.0831	37.902	37.63	38.713	-0.17929					83	30	4	0	0	0	0.96719	1	3095	3095		42.474	1.9018	1	11666000	+		69241	27159	48533	48613	75383	75383					0.10436557808372982
RRESPKLL	8	Unmodified	_RRESPKLL_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.80877685546875	2	499.808908	997.603263	-1.0124	-0.00050601	0.52983	0.00026482	-0.48257	-0.00024119	499.809154195003	38.16	1.097	37.942	37.681	38.778	-0.21849					84	30	4	0	0	0	0.845	1	3125	3125		55.504	0	1	12643000	+		69242	27159	48533	48613	75384	75384					0.10436557808372982
RRFHMEAMV	9	2 Oxidation (M)	_RRFHM(Oxidation (M))EAM(Oxidation (M))V_		RRFHM(1)EAM(1)V		RRFHM(74)EAM(74)V	0	0	2		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.7866821289062	2	604.786792	1207.55903	-1.7407	-0.0010527	1.1863	0.00071745	-0.5544	-0.00033529	604.7873702893426	74.234	1.3632	74.244	73.924	75.288	0.0096512					83	32	4	0	0	0	0.31247	1	9021	9021		73.975	9.7675	1	2112100			69243	9642	48534	48614	75385	75385		399;400			-0.03644537671766557
RRFHMEAMV	9	2 Oxidation (M)	_RRFHM(Oxidation (M))EAM(Oxidation (M))V_		RRFHM(1)EAM(1)V		RRFHM(61)EAM(61)V	0	0	2		ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.28662109375	2	604.786792	1207.55903	0.23818	0.00014405	-0.62448	-0.00037768	-0.3863	-0.00023363	604.7862775764208	74.205	1.6232	74.023	73.798	75.421	-0.18279					71	39	3	0	0	0	0.4752	1	8730	8730		60.972	10.947	1	1890100			69244	9642	48534	48614	75386	75386		399;400			-0.03644537671766557
RRFIPLRS	8	Unmodified	_RRFIPLRS_					0	0	0			REV__ENSG00000184305|ENST00000509176|CCSER1	REV__ENSG00000184305|ENST00000509176|CCSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.790283203125	2	522.824892	1043.63523	-0.20835	-0.00010893	2.1722	0.0011357	1.9638	0.0010267	522.8259853319632	70.496	0.33542	70.508	70.347	70.682	0.012421					12	7	2	0	0	0	0.027866	1	8457	8457		53.351	10.955	1	279360	+		69245	27655	48535	48615	75387	75387					0.11515970282175658
RRFQTILLYYI	11	Unmodified	_RRFQTILLYYI_					0	0	0		ENST00000443754.1_1_9:67328347-67334199:-|nuORF;ENST00000416720.1_9:42808985-42809460:+|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	ENST00000443754.1_1_9:67328347-67334199:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.9583740234375	3	495.9574	1484.85037	0.11895	5.8993E-05	3.554	0.0017626	3.6729	0.0018216	495.9586334061718	102.37	1.6075	102.2	101.47	103.08	-0.17178					122	38	5	0	0	0	1.0739	1	12746	12746		18.531	0.69791	1	585730			69246	14406	48536	48616	75388	75388					0.1273384723649542
RRGAREVVF	9	Unmodified	_RRGAREVVF_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3172607421875	2	545.317432	1088.62031	-0.95668	-0.0005217	-0.29702	-0.00016197	-1.2537	-0.00068367	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.83071	1	11017	11017		37.159	1.5408	1	15621000	+		69247	22342	48537	48617	75389	75389					0.07954478414194455
RRGELKKLH	9	Unmodified	_RRGELKKLH_					0	0	0			REV__nc|ENSG00000141985|Q99961-2|SH3GL1;REV__nc|ENSG00000140600|Q99963-4|SH3GL3	REV__nc|ENSG00000140600|Q99963-4|SH3GL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8529663085938	2	568.854181	1135.69381	-0.66068	-0.00037583	-0.97761	-0.00055612	-1.6383	-0.00093195	568.8534924489414	101.15	1.6136	101.15	100.78	102.39	0					120	36	5	0	0	0	0.72875	1	12943	12943		44.117	0	1	8405100	+		69248	24129;36717	48538	48618	75390	75390					0.1313902685665198
RRGGPAPATAS	11	Unmodified	_RRGGPAPATAS_					0	0	0			REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	REV__ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7841796875	2	520.783422	1039.55229	-0.17121	-8.9164E-05	1.6564	0.00086263	1.4852	0.00077347	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	1.018	1	13589	13589		32.812	0	1	7199700	+		69249	33422	48539	48619	75391	75391					0.034096087634907235
RRGGVKRI	8	Unmodified	_RRGGVKRI_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.3091735839844	2	471.30941	940.604266	-0.037984	-1.7902E-05	-0.50424	-0.00023766	-0.54223	-0.00025556	471.3092114228552	17.348	0.7011	17.141	16.963	17.664	-0.20669					34	13	4	0	0	0	0.88442	1	165	165		52.299	2.2746	1	2630800			69250	6665	48540	48620	75392	75392					0.13158816967927578
RRGGVRPVPH	10	Unmodified	_RRGGVRPVPH_					0	0	0			REV__ENST00000457390.1_1:148932843-148933312:+|nuORF	REV__ENST00000457390.1_1:148932843-148933312:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.83544921875	2	565.836323	1129.65809	-0.23858	-0.000135	-1.5631	-0.00088448	-1.8017	-0.0010195	565.8354865554585	21.973	0.90656	21.782	21.324	22.23	-0.19072					54	18	5	0	0	0	0.96965	2	723	723;735		49.442	2.8059	1	1803000	+		69251	32806	48541	48621	75393;75394	75393					0.09844989399653059
RRGIYERP	8	Unmodified	_RRGIYERP_					0	0	0		ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENST00000401578.2_1_6:80777785-80779717:-|nuORF	ENST00000401578.2_1_6:80777785-80779717:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.8126220703125	2	523.796332	1045.57811	0.071294	3.7343E-05	-0.79638	-0.00041714	-0.72509	-0.0003798	523.795890369168	22.966	0.466	22.764	22.407	22.873	-0.20193					11	9	2	0	0	0	0.027866	1	878	878		26.796	0	1	45202			69252	13673	48542	48622	75395	75395					0.05714503005788174
RRGLASVFSN	10	Unmodified	_RRGLASVFSN_					0	0	0		ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8301391601562	2	553.806897	1105.59924	0.016999	9.4142E-06	4.0408	0.0022378	4.0578	0.0022473	553.8081754395571	88.851	0.2552	88.713	88.649	88.904	-0.13761					7	5	2	0	0	0	0.03519	1	10854	10854		34.173	0	1	25212			69253	6934	48543	48623	75396	75396					0.050664683146806055
RRGLRPGPEL	10	Unmodified	_RRGLRPGPEL_					0	0	0		ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	575.843813	1149.67307	-0.26488	-0.00015253	-1.2073	-0.00069524	-1.4722	-0.00084777	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0393	1	11536	11536		40.778	8.8233	1	4946400			69254	11251	48544	48624	75397	75397					0.10422436476983421
RRGLRPGPEL	10	Unmodified	_RRGLRPGPEL_					0	0	0		ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8438110351562	2	575.843813	1149.67307	-0.10957	-6.3095E-05	-1.3506	-0.00077775	-1.4602	-0.00084085	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0393	1	11672	11672		40.778	0	1	4935500			69255	11251	48544	48624	75398	75398					0.10422436476983421
RRGLRPGPEL	10	Unmodified	_RRGLRPGPEL_					0	0	0		ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8438110351562	2	575.843813	1149.67307	-0.59889	-0.00034487	-0.87215	-0.00050222	-1.471	-0.00084709	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	1.0393	1	10918	10918		40.778	2.9666	1	2151700			69256	11251	48544	48624	75399	75399					0.10422436476983421
RRGLRPGPEL	10	Unmodified	_RRGLRPGPEL_					0	0	0		ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	ENST00000234256.3_1_2:65216547-65216976:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.84326171875	2	575.843813	1149.67307	-0.51071	-0.00029409	-0.999	-0.00057527	-1.5097	-0.00086936	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.96965	1	10920	10920		49.442	5.3247	1	2085600			69257	11251	48544	48624	75400	75400					0.10422436476983421
RRGPIASL	8	Unmodified	_RRGPIASL_					0	0	0		ENST00000454935.1_1_10:102133418-102133601:+|nuORF	ENST00000454935.1_1_10:102133418-102133601:+|nuORF	ENST00000454935.1_1_10:102133418-102133601:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.54742431640625	2	435.269419	868.524284	-0.59723	-0.00025996	0.60286	0.00026241	0.0056265	2.4491E-06	435.269538744625	29.713	0.59564	29.468	29.099	29.695	-0.24524					21	13	2	0	0	0	0.027866	1	1841	1841		18.324	0	1	245650			69258	14568	48545	48625	75401	75401					0.08476330574092117
RRGPPGLFGKK	11	Unmodified	_RRGPPGLFGKK_					0	0	0		COL5A3|p.Q1131K|1|0.26|ENSG00000080573|chr19:9974360-9974360|G/T|missense_variant	COL5A3|p.Q1131K|1|0.26|ENSG00000080573|chr19:9974360-9974360|G/T|missense_variant	COL5A3|p.Q1131K|1|0.26|ENSG00000080573|chr19:9974360-9974360|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.9144287109375	3	404.915646	1211.72511	-0.1742	-7.0536E-05	-2.9199	-0.0011823	-3.0941	-0.0012529	404.9143888809628	20.45	0.68742	20.227	19.926	20.613	-0.22344					37	13	4	0	0	0	1.0764	1	527	527		17.833	0.36513	1	290690			69259	474	48546	48626	75402	75402					0.12771599890743346
RRGQPTEVKVL	11	Unmodified	_RRGQPTEVKVL_					0	0	0			REV__ENST00000552176.2_17:6916465-6916567:+|nuORF	REV__ENST00000552176.2_17:6916465-6916567:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8824462890625	2	641.883136	1281.75172	-0.43971	-0.00028224	-0.76043	-0.0004881	-1.2001	-0.00077035	641.8825656983065	93.296	1.2351	93.152	92.248	93.483	-0.1441					66	28	4	0	0	0	1.0429	1	11482	11482		27.047	3.5246	1	575720	+		69260	34946	48547	48627	75403	75403					0.12211243991396259
RRGQQRPV	8	Unmodified	_RRGQQRPV_					0	0	0			REV__nc|nan|Q8N9P6|C9orf163	REV__nc|nan|Q8N9P6|C9orf163	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.79547119140625	2	498.794124	995.573694	-0.53035	-0.00026453	3.0003	0.0014965	2.47	0.001232	498.7956228714122	56.151	0.72137	56.249	55.965	56.686	0.097897					42	19	3	0	0	0	0.91239	1	6176	6176		50.025	0.48849	1	2121100	+		69261	37261	48548	48628	75404	75404					0.07573038582893332
RRGRALPR	8	Unmodified	_RRGRALPR_					0	0	0			REV__ENST00000588286.1_1_19:36036058-36036391:-|nuORF	REV__ENST00000588286.1_1_19:36036058-36036391:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2951965332031	2	491.312484	980.610414	-0.51385	-0.00025246	-3.6938	-0.0018148	-4.2077	-0.0020673	491.3091572025689	56.571	0.27947	56.669	56.473	56.752	0.097893					10	7	2	0	0	0	0.027866	1	6208	6208		33.516	20.556	1	162860	+		69262	35650	48549	48629	75405	75405					0.11933335199444173
RRGRQHQV	8	Unmodified	_RRGRQHQV_					0	0	0			REV__nc|ENSG00000166938|Q8TF46-4|DIS3L	REV__nc|ENSG00000166938|Q8TF46-4|DIS3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7982177734375	2	518.797198	1035.57984	-0.91098	-0.00047262	2.9148	0.0015122	2.0038	0.0010396	518.7986309815509	30.612	1.1942	30.686	30.378	31.572	0.074314					52	28	3	0	0	0	0.68535	1	1926	1926		68.485	5.5063	1	4010300	+		69263	26087	48550	48630	75406	75406					0.06347556814398558
RRGSGPRQL	9	Unmodified	_RRGSGPRQL_					0	0	0			REV__ENST00000520674.5_1_5:141017057-141017459:+|nuORF	REV__ENST00000520674.5_1_5:141017057-141017459:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8004760742188	2	513.799406	1025.58426	-0.66144	-0.00033985	2.8936	0.0014867	2.2321	0.0011469	513.8007349881522	31.274	0.84809	31.343	30.997	31.845	0.06896					45	20	4	0	0	0	0.59099	1	2024	2024		53.351	3.3269	1	1808500	+		69264	34299	48551	48631	75407	75407					0.0724902123731681
RRGSGPRQL	9	Unmodified	_RRGSGPRQL_					0	0	0			REV__ENST00000520674.5_1_5:141017057-141017459:+|nuORF	REV__ENST00000520674.5_1_5:141017057-141017459:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	513.799406	1025.58426	-0.66144	-0.00033985	2.8936	0.0014867	2.2321	0.0011469	513.8007349881522	31.274	0.84809	31.343	30.997	31.845	0.06896	-0.14586	7.9802E-05	NaN	53.351	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1808500	+		69265	34299	48551	48631							0.0724902123731681
RRGSPSAAFTF	11	Unmodified	_RRGSPSAAFTF_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000461601.5_1_2:47168680-47202193:+|nuORF;nc|ENSG00000068724|Q9ULT0-3|TTC7A	ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-3|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	598.8095092773438	2	598.812179	1195.60981	-1.2067	-0.00072261	-2.1486	-0.0012866	-3.3553	-0.0020092	598.8102451102915	104.74	0.43092	104.74	104.57	105	0					20	13	2	0	0	0	1.0557	1	13440	13440		23.523	2.5758	1	49454			69266	1388;18068	48552	48632	75408	75408					0.01982450969057936
RRGSPSAAFTF	11	Unmodified	_RRGSPSAAFTF_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000461601.5_1_2:47168680-47202193:+|nuORF;nc|ENSG00000068724|Q9ULT0-3|TTC7A	ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-3|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	598.812179	1195.60981	-0.59879	-0.00035856	-1.9982	-0.0011966	-2.597	-0.0015551	598.8103532071242	104.76	0.45581	104.76	104.47	104.93	0.00096893	0.011186	0.00072669	NaN	23.523	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59177			69267	1388;18068	48552	48632							0.01982450969057936
RRGSPSAAFTF	11	Unmodified	_RRGSPSAAFTF_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000461601.5_1_2:47168680-47202193:+|nuORF;nc|ENSG00000068724|Q9ULT0-3|TTC7A	ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-3|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	598.812179	1195.60981	-0.66352	-0.00039732	-3.0734	-0.0018404	-3.737	-0.0022377	598.8099790802407	104.75	0.52214	104.75	104.6	105.12	-0.0015945	0.0010346	-0.00056102	NaN	23.523	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63111			69268	1388;18068	48552	48632							0.01982450969057936
RRGSVAETVPT	11	Unmodified	_RRGSVAETVPT_					0	0	0			REV__nc|ENSG00000132768|Q9BQC3-2|DPH2	REV__nc|ENSG00000132768|Q9BQC3-2|DPH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.8239135742188	2	586.822744	1171.63093	-0.37344	-0.00021914	2.3006	0.00135	1.9271	0.0011309	586.8239606911613	109.53	0.42506	109.41	109.24	109.67	-0.12453					51	19	4	0	0	0	1.0344	1	13494	13494		29.17	0.020503	1	3447900	+		69269	23317	48553	48633	75409	75409					0.05198416277949036
RRGTGPPL	8	Unmodified	_RRGTGPPL_					0	0	0			REV__nc|ENSG00000134086|P40337-3|VHL	REV__nc|ENSG00000134086|P40337-3|VHL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2537841796875	2	427.253769	852.492984	-0.58472	-0.00024982	0.18764	8.0168E-05	-0.39709	-0.00016966	427.2539224512093	23.349	2.0442	23.288	22.52	24.564	-0.06086					112	46	4	0	0	0	0.74904	1	871	871		63.306	4.5243	1	17423000	+		69270	23420	48554	48634	75410	75410					0.0608375753998871
RRGTVPIN	8	Unmodified	_RRGTVPIN_					0	0	0			REV__ENSG00000049323|ENST00000404816|LTBP1	REV__ENSG00000049323|ENST00000404816|LTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7716979980469	2	456.772326	911.530098	0.57232	0.00026142	-0.83883	-0.00038315	-0.26651	-0.00012173	456.77180226295417	89.123	1.793	89.139	88.45	90.243	0.015907					92	42	4	0	0	0	1.0338	2	11161	11161;11173		31.955	1.4512	1	3375300	+		69271	20145	48555	48635	75411;75412	75411					0.07079429085740685
RRHAAQLDEL	10	Unmodified	_RRHAAQLDEL_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.553466796875	3	403.554666	1207.64217	-0.43833	-0.00017689	-2.3107	-0.00093248	-2.749	-0.0011094	403.55359958868013	29.424	1.3888	29.275	28.912	30.301	-0.14952					105	32	6	0	0	0	1.0447	1	1774	1774		40.058	0.18502	1	3316200	+		69272	21955	48556	48636	75413	75413					0.04665238372058411
RRHFLQRLYKW	11	Unmodified	_RRHFLQRLYKW_					0	0	0			REV__CCR1|p.R309W|1|0.11|ENSG00000163823|chr3:46203389-46203389|G/A|missense_variant	REV__CCR1|p.R309W|1|0.11|ENSG00000163823|chr3:46203389-46203389|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7850341796875	3	534.975788	1601.90553	-1.1595	-0.00062029	-1.9575	-0.0010472	-3.117	-0.0016675	534.9746120150396	55.658	0.76791	55.501	55.244	56.011	-0.15656					38	20	3	0	0	0	0.024886	1	6001	6001		6.3209	3.1096	1	289560	+		69273	19265	48557	48637	75414	75414					0.12865698547602733
RRHLARRVF	9	Unmodified	_RRHLARRVF_					0	0	0			REV__nc|ENSG00000159640|P12821-2|ACE	REV__nc|ENSG00000159640|P12821-2|ACE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.871826171875	2	605.87324	1209.73193	-0.09991	-6.0533E-05	-1.7398	-0.0010541	-1.8398	-0.0011147	605.8719802701046	98.576	1.0775	98.586	98.19	99.268	0.010231					67	24	4	0	0	0	0.98128	1	12582	12582		24.203	5.0992	1	1246300	+		69274	25266	48558	48638	75415	75415					0.13544957561953197
RRHRRRRRREG	11	Unmodified	_RRHRRRRRREG_					0	0	0		ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.318359375	3	530.988084	1589.94242	-0.69666	-0.00036992	-3.2369	-0.0017188	-3.9336	-0.0020887	530.9853824841456	103.86	1.2368	103.86	103.3	104.53	0					80	29	5	0	0	0	1.1135	1	13331	13331		6.3209	1.6775	1	144330			69275	13961	48559	48639	75416	75416					0.17104807936698307
RRHRRRRRREG	11	Unmodified	_RRHRRRRRREG_					0	0	0		ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.9855346679688	3	530.988084	1589.94242	-0.038261	-2.0316E-05	-3.7251	-0.001978	-3.7634	-0.0019983	530.9849186522008	104.1	1.5237	104.1	103.14	104.67	-0.0032196					78	36	4	0	0	0	1.1135	1	13240	13240		3.4087	1.8857	1	134220			69276	13961	48559	48639	75417	75417					0.17104807936698307
RRHWIENL	8	Unmodified	_RRHWIENL_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3115844726562	2	562.309606	1122.60466	0.14969	8.4173E-05	2.1706	0.0012205	2.3202	0.0013047	562.3107090726314	87.462	1.4859	87.427	87.11	88.596	-0.035362					109	35	5	0	0	0	0.47665	1	11041	11041		87.754	0	1	3232300	+		69277	26426	48560	48640	75418	75418					0.04826191897132048
RRHWIEYTKKT	11	Unmodified	_RRHWIEYTKKT_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7928161621094	3	506.616037	1516.82628	-1.2436	-0.00063002	2.0025	0.0010145	0.75894	0.00038449	506.95252083426016	44.324	0.23291	44.179	43.994	44.227	-0.14471					9	6	2	0	0	0	0.024757	1	4195	4195		25.892	0	1	152550	+		69278	21930	48561	48641	75419	75419					0.08854006802744152
RRIHSGLKP	9	Unmodified	_RRIHSGLKP_					0	0	0		nc|ENSG00000063587|Q9NSD4-2|ZNF275;ENSG00000063587|ENST00000650114|ZNF275	nc|ENSG00000063587|Q9NSD4-2|ZNF275	nc|ENSG00000063587|Q9NSD4-2|ZNF275	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7891235351562	2	532.327799	1062.64105	-0.426	-0.00022677	-3.3175	-0.001766	-3.7435	-0.0019928	532.3264146532966	46.234	0.34422	46.286	46.031	46.375	0.051399					17	9	3	0	0	0	0.024319	1	4463	4463		66.429	15.094	1	397340			69279	1262	48562	48642	75420	75420					0.11223068793856328
RRIHSGLKP	9	Unmodified	_RRIHSGLKP_					0	0	0		nc|ENSG00000063587|Q9NSD4-2|ZNF275;ENSG00000063587|ENST00000650114|ZNF275	nc|ENSG00000063587|Q9NSD4-2|ZNF275	nc|ENSG00000063587|Q9NSD4-2|ZNF275	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.327799	1062.64105	-0.13259	-7.0581E-05	-3.1	-0.0016502	-3.2326	-0.0017208	532.8271181141592	46.46	0.56718	46.363	46.078	46.645	-0.096653	0.038861	0.00012893	NaN	66.429	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279540			69280	1262	48562	48642							0.11223068793856328
RRIILPKAV	9	Unmodified	_RRIILPKAV_					0	0	0		ENST00000287025.3_1_8:97270644-97270794:-|nuORF	ENST00000287025.3_1_8:97270644-97270794:-|nuORF	ENST00000287025.3_1_8:97270644-97270794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7843017578125	2	533.366393	1064.71823	-0.74002	-0.0003947	4.4281	0.0023618	3.6881	0.0019671	533.369648781234	45.643	0.30344	45.643	45.445	45.748	0					13	8	3	0	0	0	0.024541	1	4453	4453		19.36	1.995	1	225360			69281	11762	48563	48643	75421	75421					0.18846287010160268
RRILIDTG	8	Unmodified	_RRILIDTG_					0	0	0		ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2878723144531	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	1.0574	1	12087	12087		17.365	1.7232	1	51888000			69282	5979	48564	48644	75422	75422					0.0874858239999412
RRILIVVP	8	Unmodified	_RRILIVVP_					0	0	0		nc|ENSG00000175356|Q9NQ36-2|SCUBE2;ENSG00000159307|ENST00000360835|SCUBE1;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6461181640625	2	483.334562	964.65457	-0.52318	-0.00025287	0.1314	6.351E-05	-0.39178	-0.00018936	483.33451970415024	48.477	0.58208	48.379	48.039	48.621	-0.097553					25	15	2	0	0	0	0.027866	1	4766	4766		14.664	13.459	1	346270			69283	6737	48565	48645	75423	75423					0.17082926573084478
RRILIVVP	8	Unmodified	_RRILIVVP_					0	0	0		nc|ENSG00000175356|Q9NQ36-2|SCUBE2;ENSG00000159307|ENST00000360835|SCUBE1;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.646484375	2	483.334562	964.65457	-0.97418	-0.00047085	0.57043	0.00027571	-0.40374	-0.00019514	483.3346817542103	48.791	0.46396	48.511	48.183	48.647	-0.27977					22	12	3	0	0	0	0.027866	1	4824	4824		14.664	0	1	306120			69284	6737	48565	48645	75424	75424					0.17082926573084478
RRILTDSAY	9	Unmodified	_RRILTDSAY_					0	0	0			REV__ENSG00000141096|ENST00000268793|DPEP3	REV__ENSG00000141096|ENST00000268793|DPEP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.8027954101562	2	547.80128	1093.58801	-0.47431	-0.00025983	1.3324	0.00072988	0.85807	0.00047005	547.8011848512032	30.849	1.4009	30.696	30.341	31.742	-0.15231					88	34	3	0	0	0	0.6504	1	1980	1980		49.442	4.4193	1	1311900	+		69285	24064	48566	48646	75425	75425					0.04495646220493654
RRIRQRRQALL	11	Unmodified	_RRIRQRRQALL_					0	0	0		ENSG00000229972|ENST00000440739|IQCF3	ENSG00000229972|ENST00000440739|IQCF3	ENSG00000229972|ENST00000440739|IQCF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.3209228515625	3	489.314803	1464.92258	4.3934	0.0021498	3.2234	0.0015773	7.6169	0.003727	489.3163218362868	17.696	0.3965	17.446	17.371	17.768	-0.25049					11	7	2	0	0	0	0.024886	1	222	222		10.104	0	1	23414			69286	10685	48567	48647	75426	75426					0.2087161915339948
RRIRRERNKMA	11	Unmodified	_RRIRRERNKMA_					0	0	0		FOS|p.S177Lfs*14|1|0.28|ENSG00000170345|chr14:75280802-75280803|-/TGAGAAGT|frameshift_variant;nc|ENSG00000170345|P01100-2|FOS;ENSG00000170345|ENST00000303562|FOS	FOS|p.S177Lfs*14|1|0.28|ENSG00000170345|chr14:75280802-75280803|-/TGAGAAGT|frameshift_variant	FOS|p.S177Lfs*14|1|0.28|ENSG00000170345|chr14:75280802-75280803|-/TGAGAAGT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.95880126953125	3	495.960032	1484.85827	0.11895	5.8993E-05	-1.753	-0.00086942	-1.6341	-0.00081043	495.9586334061718	102.37	1.6075	102.2	101.47	103.08	-0.17178					122	38	5	0	0	0	1.09	1	12692	12692		14.086	0.57807	1	585730			69287	8026	48568	48648	75427	75427					0.13523096004951185
RRISRLFIKIF	11	Unmodified	_RRISRLFIKIF_					0	0	0		ENST00000405898.5_3_17:53046162-53063581:+|nuORF;ENST00000461444.5_1_17:53063026-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.6461181640625	3	483.645267	1447.91397	-0.90237	-0.00043643	3.3489	0.0016197	2.4465	0.0011832	483.64680216388103	46.904	1.4541	46.963	46.803	48.258	0.059097					171	41	5	0	0	0	1.1045	1	4606	4606		10.104	0.8921	1	6614800			69288	13724	48569	48649	75428	75428					0.20793252464181933
RRISRLFIKIF	11	Unmodified	_RRISRLFIKIF_					0	0	0		ENST00000405898.5_3_17:53046162-53063581:+|nuORF;ENST00000461444.5_1_17:53063026-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.6469421386719	3	483.645267	1447.91397	0.20024	9.6846E-05	2.4071	0.0011642	2.6074	0.001261	483.64633390828976	46.582	1.5588	46.485	46.259	47.818	-0.096649					170	42	6	0	0	0	1.1045	2	4517	4517;4529		10.104	1.6966	1	30354000			69289	13724	48569	48649	75429;75430	75429					0.20793252464181933
RRISRLFIKIF	11	Unmodified	_RRISRLFIKIF_					0	0	0		ENST00000405898.5_3_17:53046162-53063581:+|nuORF;ENST00000461444.5_1_17:53063026-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.6465148925781	3	483.645267	1447.91397	0.025197	1.2187E-05	2.5568	0.0012366	2.582	0.0012488	483.64642593124324	46.982	1.4851	46.713	46.526	48.011	-0.26939					176	40	5	0	0	0	1.1045	1	4590	4590		10.104	0.8921	1	8321800			69290	13724	48569	48649	75431	75431					0.20793252464181933
RRISRLFIKIF	11	Unmodified	_RRISRLFIKIF_					0	0	0		ENST00000405898.5_3_17:53046162-53063581:+|nuORF;ENST00000461444.5_1_17:53063026-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	ENST00000405898.5_3_17:53046162-53063581:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.6463928222656	3	483.645267	1447.91397	-0.11273	-5.4519E-05	2.6678	0.0012903	2.5551	0.0012358	483.64647688807395	46.72	1.5498	46.526	46.345	47.895	-0.19387					182	42	5	0	0	0	1.0878	3	4558	4558;4583;4633		14.694	0.94066	1	10437000			69291	13724	48569	48649	75432;75433;75434	75432					0.20793252464181933
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.64617919921875	3	483.645267	1447.91397	-0.10584	-5.1187E-05	2.5385	0.0012277	2.4327	0.0011765	483.64639228958447	46.97	1.5774	46.97	46.733	48.311	0					192	45	5	0	0	0	1.1107	1	4666	4666		8.4073	2.0864	1	8088100	+		69292	26108	48570	48650	75435	75435					0.2079325246420467
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.64678955078125	3	483.645267	1447.91397	-0.1687	-8.1593E-05	2.6125	0.0012635	2.4438	0.0011819	483.6464068038257	48.563	2.2348	48.563	48.277	50.512	0					206	63	5	0	0	0	1.1092	1	4973	4973		8.7993	1.7806	1	3404600	+		69293	26108	48570	48650	75436	75436					0.2079325246420467
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.6466064453125	3	483.645267	1447.91397	-0.33805	-0.0001635	2.7388	0.0013246	2.4008	0.0011611	483.64649333922705	48.813	2.6288	48.66	48.125	50.754	-0.15277					239	74	4	0	0	0	1.0621	1	4990	4990		21.78	3.9473	1	2755200	+		69294	26108	48570	48650	75437	75437					0.2079325246420467
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.64666748046875	3	483.645267	1447.91397	0.20024	9.6846E-05	2.4071	0.0011642	2.6074	0.001261	483.64633390828976	46.582	1.5588	46.485	46.259	47.818	-0.096649					170	42	6	0	0	0	1.0941	3	4541	4541;4553;4568		12.957	1.7476	1	30354000	+		69295	26108	48570	48650	75438;75439;75440	75438					0.2079325246420467
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.6461181640625	3	483.645267	1447.91397	-0.52098	-0.00025197	2.8238	0.0013657	2.3028	0.0011138	483.6464972624283	48.178	1.601	48.08	47.78	49.381	-0.097553					135	42	4	0	0	0	1.0921	1	4766	4766		13.508	3.404	1	3644600	+		69296	26108	48570	48650	75441	75441					0.2079325246420467
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.6468811035156	3	483.645267	1447.91397	0.025197	1.2187E-05	2.5568	0.0012366	2.582	0.0012488	483.64642593124324	46.982	1.4851	46.713	46.526	48.011	-0.26939					176	40	5	0	0	0	1.0563	3	4601	4565;4601;4615		23.378	8.6842	1	8321800	+		69297	26108	48570	48650	75442;75443;75444	75443					0.2079325246420467
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.646484375	3	483.645267	1447.91397	-0.88349	-0.00042729	3.1607	0.0015287	2.2772	0.0011014	483.64666777790575	48.579	1.4719	48.303	47.966	49.438	-0.27598					147	39	5	0	0	0	1.0921	1	4824	4824		13.508	3.404	1	3742500	+		69298	26108	48570	48650	75445	75445					0.2079325246420467
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.64678955078125	3	483.645267	1447.91397	-0.11273	-5.4519E-05	2.6678	0.0012903	2.5551	0.0012358	483.64647688807395	46.72	1.5498	46.526	46.345	47.895	-0.19387					182	42	5	0	0	0	1.0811	4	4546	4511;4546;4573;4595		16.53	4.1582	1	10437000	+		69299	26108	48570	48650	75446;75447;75448;75449	75447					0.2079325246420467
RRITLPGYVF	10	Unmodified	_RRITLPGYVF_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3558959960938	2	611.358765	1220.70298	-0.45812	-0.00028007	-3.7749	-0.0023078	-4.2331	-0.0025879	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.0508	2	11623	11599;11623		39.253	2.0937	1	13365000	+		69300	36556	48571	48651	75450;75451	75451					0.10145375422303005
RRKAAPLPGPT	11	Unmodified	_RRKAAPLPGPT_					0	0	0		ENSG00000092978|ENST00000366935|GPATCH2	ENSG00000092978|ENST00000366935|GPATCH2	ENSG00000092978|ENST00000366935|GPATCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.353271484375	2	582.354014	1162.69348	0.45576	0.00026541	-1.5295	-0.00089072	-1.0738	-0.00062531	582.3530460378859	102.36	1.1668	102.35	101.97	103.14	-0.0054474					95	27	7	0	0	0	1.0238	1	13042	13042		31.53	7.0106	1	8508600			69301	2003	48572	48652	75452	75452					0.11863607136797327
RRKAAPLPGPT	11	Unmodified	_RRKAAPLPGPT_					0	0	0		ENSG00000092978|ENST00000366935|GPATCH2	ENSG00000092978|ENST00000366935|GPATCH2	ENSG00000092978|ENST00000366935|GPATCH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.3535766601562	2	582.354014	1162.69348	-0.68918	-0.00040135	-0.35403	-0.00020617	-1.0432	-0.00060752	582.3536897697854	102.35	1.693	102.23	101.92	103.61	-0.12666					100	40	6	0	0	0	1.0238	1	12744	12744		31.53	3.6476	1	7549000			69302	2003	48572	48652	75453	75453					0.11863607136797327
RRKAAPLPGPT	11	Unmodified	_RRKAAPLPGPT_					0	0	0		ENSG00000092978|ENST00000366935|GPATCH2	ENSG00000092978|ENST00000366935|GPATCH2	ENSG00000092978|ENST00000366935|GPATCH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.3533325195312	2	582.354014	1162.69348	-0.28496	-0.00016595	-0.80509	-0.00046885	-1.0901	-0.0006348	582.3534070628981	102.44	0.86188	102.26	101.97	102.84	-0.17178					81	20	6	0	0	0	1.0238	1	12707	12707		31.53	3.4483	1	8672600			69303	2003	48572	48652	75454	75454					0.11863607136797327
RRKACRVSVF	10	Unmodified	_RRKACRVSVF_					0	0	0			REV__ENST00000520114.1_1_8:38003479-38005900:-|nuORF	REV__ENST00000520114.1_1_8:38003479-38005900:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3568725585938	2	611.353491	1220.69243	0.14542	8.89E-05	4.3008	0.0026293	4.4462	0.0027182	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.0393	1	11685	11685		40.778	2.9666	1	13233000	+		69304	24557	48573	48653	75455	75455					0.09091069496230375
RRKAERKKHS	10	Unmodified	_RRKAERKKHS_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	648.392822265625	2	648.391993	1294.76943	-2.3194	-0.0015039	3.9094	0.0025348	1.59	0.001031	648.3947727182727	105.47	0.99561	105.35	105.03	106.03	-0.12444					66	30	4	0	0	0	1.1266	1	13134	13134		29.17	1.0886	1	1302600			69305	1416	48574	48654	75456	75456					0.13384004036925035
RRKALGGP	8	Unmodified	_RRKALGGP_					0	0	0		ENST00000253099.10_2_19:10365284-10368954:+|nuORF	ENST00000253099.10_2_19:10365284-10368954:+|nuORF	ENST00000253099.10_2_19:10365284-10368954:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.248291015625	2	427.769586	853.524619	1.3729	0.00058729	-2.8413	-0.0012154	-1.4684	-0.00062814	427.7682628333885	22.925	0.18685	22.734	22.617	22.804	-0.19117					5	3	2	0	0	0	0.027866	1	838	838		21.702	7.0382	1	27647			69306	11368	48575	48655	75457	75457					0.09199750293942088
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3275756835938	2	577.327465	1152.64038	-0.1193	-6.8875E-05	-0.83502	-0.00048208	-0.95432	-0.00055096	577.3265644260136	37.661	0.71024	37.468	37.152	37.862	-0.193					53	18	4	0	0	0	0.45795	1	3050	3050		62.107	24.948	1	2307500			69307	4128	48576	48656	75458	75458					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3273315429688	2	577.327465	1152.64038	-1.4217	-0.00082079	0.41322	0.00023856	-1.0085	-0.00058223	577.3272687856294	37.624	0.75393	37.404	37.114	37.868	-0.2195					57	19	4	0	0	0	0.45795	2	3023	3023;3036		62.107	19.711	1	2444500			69308	4128	48576	48656	75459;75460	75459					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.3272705078125	2	577.327465	1152.64038	-1.3226	-0.00076359	0.44611	0.00025755	-0.87652	-0.00050604	577.3273610883565	37.644	0.87483	37.43	37.148	38.023	-0.21402					64	23	4	0	0	0	0.77768	1	3019	3019		40.778	4.3314	1	2143100			69309	4128	48576	48656	75461	75461					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.327465	1152.64038	-1.963	-0.0011333	1.2999	0.00075045	-0.66315	-0.00038286	577.328057250028	37.672	0.55105	37.672	37.486	38.037	0	0.13079	0.00087345	NaN	62.107	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270080			69310	4128	48576	48656							0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	577.327465	1152.64038	-1.0001	-0.0005774	0.30658	0.000177	-0.69355	-0.0004004	577.3274618710499	37.568	1.0376	37.504	37.198	38.236	-0.063385	-0.036668	-0.00027344	NaN	62.107	40	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215760			69311	4128	48576	48656							0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.327465	1152.64038	-1.1012	-0.00063577	0.074532	4.303E-05	-1.0267	-0.00059274	577.3274479170335	37.736	0.60458	37.769	37.563	38.167	0.032269	0.22765	-0.00054138	NaN	62.107	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220580			69312	4128	48576	48656							0.07016229354144343
RRKKPRRPPK	10	Unmodified	_RRKKPRRPPK_					0	0	0			REV__ENST00000600714.5_1_19:53158930-53164070:-|nuORF	REV__ENST00000600714.5_1_19:53158930-53164070:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2480773925781	3	440.29334	1317.85819	0.32431	0.00014279	-2.751	-0.0012113	-2.4267	-0.0010685	440.6264678866438	57.827	1.4677	57.827	57.532	58.999	0					80	39	3	0	0	0	0.03519	1	6557	6557		20.03	3.5006	1	981190	+		69313	35847	48577	48657	75462	75462					0.21197464067267902
RRKLFSEKTG	10	Unmodified	_RRKLFSEKTG_					0	0	0			REV__ENST00000391992.3_1_12:9181361-9181625:-|nuORF	REV__ENST00000391992.3_1_12:9181361-9181625:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3553466796875	2	611.356754	1220.69895	-0.45812	-0.00028007	-0.48494	-0.00029647	-0.94306	-0.00057655	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.1088	1	11551	11551		31.53	2.3598	1	13365000	+		69314	31592	48578	48658	75463	75463					0.09743285928584555
RRKLTHLVSA	10	Unmodified	_RRKLTHLVSA_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.8666381835938	2	590.867289	1179.72002	-0.98146	-0.00057991	-0.55879	-0.00033017	-1.5402	-0.00091008	590.8671327626686	102.25	1.0723	102.25	101.94	103.01	0.0073471					79	25	6	0	0	0	1.0992	1	13083	13083		32.812	0	1	5209500	+		69315	24365	48579	48659	75464	75464					0.13735296028130506
RRKLTHLVSA	10	Unmodified	_RRKLTHLVSA_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.8663940429688	2	590.867289	1179.72002	-0.15177	-8.9679E-05	-1.0045	-0.00059355	-1.1563	-0.00068323	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931					85	41	5	0	0	0	1.0271	1	12717	12717		42.396	1.618	1	5173900	+		69316	24365	48579	48659	75465	75465					0.13735296028130506
RRKLTHLVSA	10	Unmodified	_RRKLTHLVSA_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.8666381835938	2	590.867289	1179.72002	-0.71437	-0.0004221	-1.0509	-0.00062095	-1.7653	-0.0010431	590.8669241812987	102.37	1.1116	102.25	101.89	103	-0.12666					79	26	5	0	0	0	1.1307	1	12702	12702		26.693	4.1133	1	4456200	+		69317	24365	48579	48659	75466	75466					0.13735296028130506
RRKMRRREQLT	11	Unmodified	_RRKMRRREQLT_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.63385009765625	3	510.635437	1528.88448	0.41252	0.00021065	-2.8262	-0.0014432	-2.4137	-0.0012325	510.6338732089937	101.96	1.4935	101.83	101	102.49	-0.12931					100	34	4	0	0	0	1.1062	1	12721	12721		9.6461	1.2389	1	164910	+		69318	29566	48580	48660	75467	75467					0.1411936517642971
RRKNMRYFRE	10	Unmodified	_RRKNMRYFRE_					0	0	0		ENST00000563158.1_1_16:46993297-46998617:-|nuORF	ENST00000563158.1_1_16:46993297-46998617:-|nuORF	ENST00000563158.1_1_16:46993297-46998617:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.9281921386719	3	485.92985	1454.76772	-0.14566	-7.0779E-05	-4.0568	-0.0019713	-4.2024	-0.0020421	485.92800544335523	45.353	1.2752	45.101	44.549	45.824	-0.25252					112	34	5	0	0	0	1.1333	1	4288	4288		28.081	3.8497	1	13367000			69319	16860	48581	48661	75468	75468					0.05852626956630047
RRKNMRYFRE	10	Unmodified	_RRKNMRYFRE_					0	0	0		ENST00000563158.1_1_16:46993297-46998617:-|nuORF	ENST00000563158.1_1_16:46993297-46998617:-|nuORF	ENST00000563158.1_1_16:46993297-46998617:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.9289245605469	3	485.92985	1454.76772	-0.1631	-7.9255E-05	-4.0235	-0.0019552	-4.1866	-0.0020344	485.92804870928484	45.313	1.2512	45.102	44.595	45.846	-0.21109					94	34	4	0	0	0	1.1314	1	4283	4283		27.047	2.8155	1	14024000			69320	16860	48581	48661	75469	75469					0.05852626956630047
RRKNPLLRK	9	Unmodified	_RRKNPLLRK_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.8665161132812	2	590.891098	1179.76764	-0.39389	-0.00023275	-2.0796	-0.0012288	-2.4735	-0.0014616	590.8893027538222	102.48	0.17148	102.31	102.2	102.37	-0.17178					5	3	2	0	0	0	0.024487	1	12708	12708		40.573	17.53	1	39135			69321	1242	48582	48662	75470	75470					0.18494995018954796
RRKPFRTG	8	Unmodified	_RRKPFRTG_					0	0	0			REV__ENSG00000237412|ENST00000617714|PRSS56	REV__ENSG00000237412|ENST00000617714|PRSS56	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3061828613281	2	509.306867	1016.59918	-1.5235	-0.00077591	-0.12162	-6.1944E-05	-1.6451	-0.00083785	509.30666606233405	91.952	1.3811	91.803	91.353	92.734	-0.1487					100	32	4	0	0	0	1.043	1	11265	11265		30.504	0.18592	1	3302400	+		69322	28942	48583	48663	75471	75471					0.09154513105318074
RRKPHRKFN	9	Unmodified	_RRKPHRKFN_					0	0	0			REV__ENSG00000162426|ENST00000471889|SLC45A1	REV__ENSG00000162426|ENST00000471889|SLC45A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8698120117188	2	619.870697	1237.72684	-0.66003	-0.00040914	-1.389	-0.00086098	-2.049	-0.0012701	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	0.92825	1	11770	11770		30.504	1.3541	1	5229800	+		69323	25438	48584	48664	75472	75472					0.11748653699351053
RRKPNHKL	8	Unmodified	_RRKPNHKL_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.8271484375	2	524.827966	1047.64138	0.15236	7.9965E-05	-2.0921	-0.001098	-1.9397	-0.001018	524.8267476679999	97.913	2.4605	97.923	97.283	99.743	0.010231					170	56	6	0	0	0	0.96719	3	12490	12442;12478;12490		42.474	8.9589	1	13084000	+		69324	22761	48585	48665	75473;75474;75475	75475					0.1194648851369493
RRKPNHKL	8	Unmodified	_RRKPNHKL_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.8272094726562	2	524.827966	1047.64138	0.79891	0.00041929	-2.7532	-0.001445	-1.9543	-0.0010257	524.8264135376637	97.953	2.024	97.951	97.456	99.48	-0.0020828					149	46	5	0	0	0	1.0239	2	12453	12441;12453		33.516	4.8362	1	12702000	+		69325	22761	48585	48665	75476;75477	75477					0.1194648851369493
RRKPNHKL	8	Unmodified	_RRKPNHKL_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8267211914062	2	524.827966	1047.64138	0.5509	0.00028913	-2.8425	-0.0014918	-2.2916	-0.0012027	524.8263320992579	98.046	2.2952	97.91	97.423	99.718	-0.13625					172	55	6	0	0	0	1.0239	2	12146	12125;12146		33.516	8.0654	1	14595000	+		69326	22761	48585	48665	75478;75479	75479					0.1194648851369493
RRKPNHKL	8	Unmodified	_RRKPNHKL_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.8267822265625	2	524.827966	1047.64138	1.1502	0.00060363	-3.4208	-0.0017953	-2.2706	-0.0011917	524.8260243870249	98.019	1.8552	97.895	97.417	99.272	-0.12414					149	45	5	0	0	0	0.96719	5	12134	12134;12144;12155;12179;12191		42.474	5.0938	1	12738000	+		69327	22761	48585	48665	75480;75481;75482;75483;75484	75480					0.1194648851369493
RRKPNHKL	8	Unmodified	_RRKPNHKL_					0	0	0			REV__ENSG00000124422|ENST00000261497|USP22	REV__ENSG00000124422|ENST00000261497|USP22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.8268432617188	2	524.827966	1047.64138	-0.04084	-2.1434E-05	-2.3257	-0.0012206	-2.3665	-0.001242	524.8266178770541	98.118	1.9254	97.953	97.397	99.322	-0.1652					155	45	5	0	0	0	1.0239	4	12161	12099;12149;12161;12175		33.516	5.0938	1	11527000	+		69328	22761	48585	48665	75485;75486;75487;75488	75487					0.1194648851369493
RRKRGPGQ	8	Unmodified	_RRKRGPGQ_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.75360107421875	2	477.788841	953.56313	0.12214	5.8356E-05	3.7627	0.0017978	3.8849	0.0018561	477.7904870346616	19.748	0.71777	19.63	19.2	19.918	-0.11872					18	14	2	0	0	0	0.027866	1	417	417		19.36	1.995	1	56241	+		69329	24236	48586	48666	75489	75489					0.08449055928474536
RRKRITKL	8	Unmodified	_RRKRITKL_					0	0	0		ENST00000375608.7_2_13:113548693-113669133:+|nuORF	ENST00000375608.7_2_13:113548693-113669133:+|nuORF	ENST00000375608.7_2_13:113548693-113669133:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.8675537109375	2	535.867092	1069.71963	-0.56952	-0.00030519	0.66201	0.00035475	0.092483	4.9559E-05	535.8673123098158	17.502	0.34847	17.295	17.166	17.514	-0.20669					15	6	3	0	0	0	1.0574	1	183	183		18.324	1.8513	1	125980			69330	13163	48587	48667	75490	75490					0.18755921098909312
RRKRQAVDS	9	Unmodified	_RRKRQAVDS_					0	0	0		ENST00000496846.1_1_7:30411132-30411270:+|nuORF	ENST00000496846.1_1_7:30411132-30411270:+|nuORF	ENST00000496846.1_1_7:30411132-30411270:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3240356445312	2	558.323245	1114.63194	0.61136	0.00034134	1.8305	0.001022	2.4418	0.0013633	558.3242932364805	98.782	1.2337	98.646	98.19	99.423	-0.13626					48	29	3	0	0	0	0.80658	1	12231	12231		38.806	5.9937	1	245640			69331	15576	48588	48668	75491	75491					0.0792067543752637
RRKRQVYG	8	Unmodified	_RRKRQVYG_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167114257812	2	531.817599	1061.62064	-0.35028	-0.00018629	-1.1729	-0.00062377	-1.5232	-0.00081005	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	1.0472	1	10833	10833		29.842	0.69198	1	5249700			69332	5869	48589	48669	75492	75492					0.09229898134049108
RRKRRWRRARE	11	Unmodified	_RRKRRWRRARE_					0	0	0		ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.69598388671875	4	407.250358	1624.97232	0.36513	0.0001487	-4.222	-0.0017194	-3.8569	-0.0015707	407.49889572172714	36.722	0.28295	36.521	36.327	36.61	-0.20143					10	6	2	0	0	0	0.024898	1	2900	2900		6.001	4.6791	1	87488			69333	10647	48590	48670	75493	75493					0.18483746882020569
RRKRRWRRARE	11	Unmodified	_RRKRRWRRARE_					0	0	0		ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	ENSG00000224109|ENST00000417339|CENPVL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		4	407.250358	1624.97232	0.9511	0.00038733	-4.1807	-0.0017026	-3.2296	-0.0013152	407.4986387672058	36.523	0.31264	36.561	36.409	36.721	0.038044	0.035165	0.00041623	NaN	6.001	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93663			69334	10647	48590	48670							0.18483746882020569
RRKRSQSK	8	Unmodified	_RRKRSQSK_					0	0	0		ENSG00000153914|ENST00000334121|SREK1;nc|ENSG00000153914|Q8WXA9|SREK1;ENST00000519259.5_1_5:65460585-65460726:+|nuORF	ENSG00000153914|ENST00000334121|SREK1	ENSG00000153914|ENST00000334121|SREK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.801025390625	2	523.320506	1044.62646	-0.15132	-7.9186E-05	4.2107	0.0022036	4.0594	0.0021244	523.3222672245404	19.578	0.36765	19.578	19.414	19.782	0					13	7	2	0	0	0	0.027866	1	449	449		53.351	0	1	72501			69335	6365	48591	48671	75494	75494					0.10592996645709718
RRKRSTLPRRQ	11	Unmodified	_RRKRSTLPRRQ_					0	0	0			REV__SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|60|1|anti-sense	REV__SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|60|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.3028259277344	3	485.302675	1452.8862	4.2004	0.0020385	-4.3039	-0.0020887	-0.10347	-5.0214E-05	485.3006231361926	17.696	1.5837	17.446	17.179	18.763	-0.25049					78	31	4	0	0	0	1.0764	1	195	195		17.833	4.3252	1	299890	+		69336	37646	48592	48672	75495	75495					0.17786742256680554
RRKRTREK	8	Unmodified	_RRKRTREK_					0	0	0			REV__ENSG00000189233|ENST00000413272|NUGGC	REV__ENSG00000189233|ENST00000413272|NUGGC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.813232421875	2	565.35488	1128.69521	3.9261	0.0022196	-1.2062	-0.00068195	2.7199	0.0015377	565.3539216516763	17.877	0.24812	17.627	17.47	17.719	-0.25049					12	4	3	0	0	0	0.027866	1	214	214		37.159	0	1	47251	+		69337	28110	48593	48673	75496	75496					0.13600660945417076
RRKRYRCL	8	Unmodified	_RRKRYRCL_					0	0	0		nc|ENSG00000187624|Q6ZQX7-2|LIAT1;ENSG00000187624|ENST00000360127|C17orf97;nc|ENSG00000187624|Q6ZQX7-3|LIAT1;nc|ENSG00000187624|Q6ZQX7|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	nc|ENSG00000187624|Q6ZQX7-2|LIAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8434448242188	2	575.840551	1149.66655	0.36839	0.00021213	4.3338	0.0024956	4.7022	0.0027077	575.8429202479575	102.65	0.55697	102.52	102.23	102.79	-0.12931					33	12	4	0	0	0	1.0574	1	12739	12739		26.796	0.10319	1	490120			69338	9643	48594	48674	75497	75497					0.09770220044629241
RRKYEETL	8	Unmodified	_RRKYEETL_					0	0	0		CEP55|p.Q273L|1|0.17|ENSG00000138180|chr10:93517073-93517073|A/T|missense_variant	CEP55|p.Q273L|1|0.17|ENSG00000138180|chr10:93517073-93517073|A/T|missense_variant	CEP55|p.Q273L|1|0.17|ENSG00000138180|chr10:93517073-93517073|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.8026123046875	2	547.80128	1093.58801	-0.63951	-0.00035033	1.5488	0.00084842	0.90926	0.00049809	547.8012374687493	30.798	1.0485	30.62	30.203	31.252	-0.17818					69	25	4	0	0	0	0.91956	1	1975	1975		49.442	5.3247	1	1290200			69339	256	48595	48675	75498	75498					0.044956462205163916
RRKYIAKEGT	10	Unmodified	_RRKYIAKEGT_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.356201171875	2	611.356754	1220.69895	-0.32068	-0.00019605	-0.62425	-0.00038164	-0.94493	-0.00057769	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.0992	1	11938	11938		32.812	1.2826	1	11218000	+		69340	21324	48596	48676	75499	75499					0.09743285928561818
RRKYIAKEGT	10	Unmodified	_RRKYIAKEGT_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3560791015625	2	611.356754	1220.69895	-1.8097	-0.0011063	0.85028	0.00051983	-0.95937	-0.00058652	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.0393	1	11600	11600		40.778	5.6261	1	13060000	+		69341	21324	48596	48676	75500	75500					0.09743285928561818
RRKYKELLN	9	Unmodified	_RRKYKELLN_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.23199462890625	3	407.247173	1218.71969	-0.16089	-6.5521E-05	3.5943	0.0014638	3.4334	0.0013982	407.2485746471607	43.566	0.14531	43.421	43.316	43.461	-0.14471					5	3	2	0	0	0	0.024541	1	4061	4061		22.58	0	1	37704	+		69342	21436	48597	48677	75501	75501					0.11907876308282539
RRLALVPGE	9	Unmodified	_RRLALVPGE_					0	0	0		ENST00000460425.1_1_10:49863935-49864277:-|nuORF	ENST00000460425.1_1_10:49863935-49864277:-|nuORF	ENST00000460425.1_1_10:49863935-49864277:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	505.8080749511719	2	505.808908	1009.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.02	1	57.787	57.287	58.287	-0.23363								0	0	0	0.63578	1	6348	6348		34.173	5.0025	1				69343	14653	48598	48678	75502	75502					0.09884557808379668
RRLANLSL	8	Unmodified	_RRLANLSL_					0	0	0			REV__ENST00000325167.9_1_17:78972954-78973176:+|nuORF	REV__ENST00000325167.9_1_17:78972954-78973176:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7972106933594	2	471.795801	941.577048	-0.34275	-0.00016171	3.4053	0.0016066	3.0625	0.0014449	471.7972669938408	85.602	1.3414	85.626	85.035	86.376	0.024162					58	31	3	0	0	0	0.94517	1	10688	10688		45.952	5.3793	1	1244500	+		69344	30386	48599	48679	75503	75503					0.10392288636899139
RRLDFRKWYQF	11	Unmodified	_RRLDFRKWYQF_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.887451171875	4	404.471755	1613.85791	0.82889	0.00033526	-0.87381	-0.00035343	-0.044923	-1.817E-05	404.4713634577011	22.688	0.65215	22.499	22.281	22.933	-0.18894					26	13	3	0	0	0	0.024895	1	824	824		6.6596	3.2509	1	98603	+		69345	21902	48600	48680	75504	75504					0.07553999556739655
RRLDMAQT	8	Unmodified	_RRLDMAQT_					0	0	0			REV__ENST00000489483.5_1_3:48670389-48671049:-|nuORF	REV__ENST00000489483.5_1_3:48670389-48671049:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7814636230469	2	495.761101	989.507648	-0.51055	-0.00025311	1.2605	0.00062491	0.74996	0.0003718	495.761516062325	66.197	0.88113	65.952	65.359	66.24	-0.24517					27	21	2	0	0	0	0.027866	1	7602	7602		29.15	1.2673	1	120260	+		69346	28867	48601	48681	75505	75505					0.012474616258373317
RRLEEDKMRIL	11	Unmodified	_RRLEEDKMRIL_					0	0	0			REV__ENST00000470814.1_1_22:19709577-19710004:+|nuORF	REV__ENST00000470814.1_1_22:19709577-19710004:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7669372558594	3	486.945165	1457.81367	0.45015	0.0002192	-3.0538	-0.001487	-2.6036	-0.0012678	486.94365253884627	40.562	1.0934	40.449	39.715	40.808	-0.11223					88	29	5	0	0	0	0.024821	1	3473	3473		25.126	2.5644	1	862620	+		69347	33162	48602	48682	75506	75506					0.10307227348243941
RRLELAEP	8	Unmodified	_RRLELAEP_					0	0	0			REV__ENST00000420190.6_3_1:859345-859660:+|nuORF	REV__ENST00000420190.6_3_1:859345-859660:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7566833496094	2	492.285266	982.555979	1.9525	0.0009612	0.3809	0.00018751	2.3334	0.0011487	492.2840569288314	23.76	0.47789	23.569	23.36	23.838	-0.19117					26	10	4	0	0	0	0.027866	1	958	958		44.117	6.3053	1	231430	+		69348	32156	48603	48683	75507	75507					0.06400278537375925
RRLFSTKGVAS	11	Unmodified	_RRLFSTKGVAS_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3525390625	2	611.356754	1220.69895	-0.5279	-0.00032273	-0.63461	-0.00038798	-1.1625	-0.00071071	611.3562554984684	92.326	2.2035	92.318	91.16	93.364	-0.0082932					149	52	4	0	0	0	1.0075	1	11735	11735		35.152	0.97948	1	3964400	+		69349	23077	48604	48684	75508	75508					0.09743285928607293
RRLFSTKGVAS	11	Unmodified	_RRLFSTKGVAS_					0	0	0			REV__ENSG00000130038|ENST00000440314|CRACR2A	REV__ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3557739257812	2	611.356754	1220.69895	-1.8097	-0.0011063	0.85028	0.00051983	-0.95937	-0.00058652	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.0392	1	11612	11612		28.081	1.3886	1	13060000	+		69350	23077	48604	48684	75509	75509					0.09743285928607293
RRLKRVGG	8	Unmodified	_RRLKRVGG_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.3092956542969	2	471.30941	940.604266	1.5197	0.00071624	-2.1623	-0.0010191	-0.64262	-0.00030287	471.3084331857164	17.339	0.65063	17.185	17.007	17.658	-0.15403					35	12	4	0	0	0	1.0338	1	166	166		31.955	3.7006	1	2941000			69351	16936	48605	48685	75510	75510					0.13158816967938947
RRLLERLRLRP	11	Unmodified	_RRLLERLRLRP_					0	0	0		ENST00000352681.7_2_16:727083-728243:+|nuORF	ENST00000352681.7_2_16:727083-728243:+|nuORF	ENST00000352681.7_2_16:727083-728243:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.78326416015625	3	493.323187	1476.94773	0.068938	3.4009E-05	-3.3075	-0.0016317	-3.2386	-0.0015977	493.6560406513232	49.62	0.15788	49.34	49.201	49.359	-0.27977					5	3	2	0	0	0	0.024898	1	4968	4968		6.001	0.30226	1	80110			69352	12605	48606	48686	75511	75511					0.22833673955960876
RRLLERLRLRP	11	Unmodified	_RRLLERLRLRP_					0	0	0		ENST00000352681.7_2_16:727083-728243:+|nuORF	ENST00000352681.7_2_16:727083-728243:+|nuORF	ENST00000352681.7_2_16:727083-728243:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7821350097656	3	493.323187	1476.94773	0.13212	6.5177E-05	-2.4	-0.001184	-2.2679	-0.0011188	493.3219771154778	49.43	0.22909	49.248	49.076	49.305	-0.18206					9	5	2	0	0	0	0.024898	1	4945	4945		5.6988	0.28586	1	135870			69353	12605	48606	48686	75512	75512					0.22833673955960876
RRLLGRGGP	9	Unmodified	_RRLLGRGGP_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.57965087890625	2	491.306867	980.599181	3.1194	0.0015326	-3.0169	-0.0014822	0.1025	5.0357E-05	491.30521710047054	18.937	0.44253	19	18.747	19.189	0.063307					17	8	3	0	0	0	0.024541	1	334	334		16.473	3.514	1	53007	+		69354	36501	48607	48687	75513	75513					0.1081051310533212
RRLLLLLLL	9	Unmodified	_RRLLLLLLL_					0	0	0		ENSG00000141096|ENST00000268793|DPEP3;PCDHA4|p.D276Tfs*14|1|0.12|ENSG00000204967|chr5:140808010-140808010|G/-|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6	ENSG00000141096|ENST00000268793|DPEP3	ENSG00000141096|ENST00000268793|DPEP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2701416015625	2	561.907894	1121.80123	-0.78792	-0.00044274	4.0561	0.0022792	3.2682	0.0018364	561.9112928614118	26.389	0.20079	26.153	26.067	26.268	-0.23603					7	5	2	0	0	0	0.024541	1	1372	1372		3.6843	0	1	102870			69355	5470	48608	48688	75514	75514					0.24520603738187674
RRLLRVLRARE	11	Unmodified	_RRLLRVLRARE_					0	0	0		ENSG00000170369|ENST00000304725|CST2	ENSG00000170369|ENST00000304725|CST2	ENSG00000170369|ENST00000304725|CST2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.9790954589844	3	479.979421	1436.91643	1.0805	0.00051864	-1.2835	-0.00061606	-0.20297	-9.7419E-05	479.9787898934328	18.692	0.74184	18.536	18.247	18.989	-0.15637					46	14	4	0	0	0	1.0941	1	350	350		12.957	2.8536	1	196890			69356	8028	48609	48689	75515	75515					0.21545100921866833
RRLLSALKKNS	11	Unmodified	_RRLLSALKKNS_					0	0	0		ENST00000366955.7_1_1:214818728-214818815:+|nuORF	ENST00000366955.7_1_1:214818728-214818815:+|nuORF	ENST00000366955.7_1_1:214818728-214818815:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	643.4033203125	2	643.406778	1284.799	-0.092508	-5.952E-05	0.2003	0.00012888	0.10779	6.9355E-05	643.4071063933097	104.54	0.54574	104.37	104.11	104.66	-0.16791					31	14	3	0	0	0	1.0685	1	13011	13011		19.997	1.7347	1	307510			69357	12830	48610	48690	75516	75516					0.16799523262420735
RRLPEESR	8	Unmodified	_RRLPEESR_					0	0	0			REV__SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|35|3|sense	REV__SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|35|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7911987304688	2	521.791247	1041.56794	-0.11657	-6.0827E-05	-0.54315	-0.00028341	-0.65972	-0.00034424	521.7910647563884	21.201	1.4047	21.272	20.91	22.314	0.071487					84	28	8	0	0	0	0.62178	1	592	592		74.255	5.4682	1	2356100	+		69358	37629	48611	48691	75517	75517					0.04881895280550452
RRLPPTLSA	9	Unmodified	_RRLPPTLSA_					0	0	0		ENST00000530562.5_1_11:74656092-74660222:-|nuORF	ENST00000530562.5_1_11:74656092-74660222:-|nuORF	ENST00000530562.5_1_11:74656092-74660222:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.80853271484375	2	505.808908	1009.60326	-0.092728	-4.6903E-05	-0.19997	-0.00010115	-0.2927	-0.00014805	505.8087263252339	57.84	0.68101	57.65	57.148	57.829	-0.19017					46	17	4	0	0	0	0.93097	1	6335	6335		30.318	6.115	1	2504000			69359	16236	48612	48692	75518	75518					0.09884557808356931
RRLPPTLSA	9	Unmodified	_RRLPPTLSA_					0	0	0		ENST00000530562.5_1_11:74656092-74660222:-|nuORF	ENST00000530562.5_1_11:74656092-74660222:-|nuORF	ENST00000530562.5_1_11:74656092-74660222:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	505.8085632324219	2	505.808908	1009.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.942	1	57.708	57.208	58.208	-0.23363								0	0	0	0.60292	1	6336	6336		39.253	2.0937	1				69360	16236	48612	48692	75519	75519					0.09884557808356931
RRLPPVRPH	9	Unmodified	_RRLPPVRPH_					0	0	0		nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.8054809570312	2	564.349066	1126.68358	-0.95189	-0.0005372	-0.91104	-0.00051415	-1.8629	-0.0010513	564.3483322845312	56.423	1.1503	56.521	56.209	57.359	0.097893					74	31	4	0	0	0	0.024381	1	6197	6197		55.504	28.811	1	1564100			69361	18648	48613	48693	75520	75520					0.12530463922075796
RRLPQRQRLLL	11	Unmodified	_RRLPQRQRLLL_					0	0	0		ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.6463317871094	3	483.647671	1447.92118	0.025197	1.2187E-05	-2.4128	-0.001167	-2.3876	-0.0011548	483.64642593124324	46.982	1.4851	46.713	46.526	48.011	-0.26939					176	40	5	0	0	0	1.0941	1	4627	4627		12.957	2.8536	1	8321800			69362	12345	48614	48694	75521	75521					0.21513985064643748
RRLQKGGAD	9	Unmodified	_RRLQKGGAD_					0	0	0		ENST00000422595.5_1_1:151318986-151319436:-|nuORF;ENST00000421986.5_1_1:151318986-151319659:-|nuORF;ENST00000290524.8_2_1:151318986-151319719:-|nuORF;ENST00000478564.5_1_1:151318986-151319713:-|nuORF;ENST00000450506.5_1_1:151318986-151319332:-|nuORF	ENST00000422595.5_1_1:151318986-151319436:-|nuORF	ENST00000422595.5_1_1:151318986-151319436:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.231689453125	2	500.785964	999.557376	-0.36379	-0.00018218	-3.0108	-0.0015078	-3.3746	-0.0016899	501.2858632009143	45.155	0.19275	44.903	44.826	45.019	-0.25252					6	4	2	0	0	0	0.024457	1	4237	4237		45.952	6.9305	1	327200			69363	11783	48615	48695	75522	75522					0.05757912626131656
RRLQTRKEKAQ	11	Unmodified	_RRLQTRKEKAQ_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.951416015625	3	471.951419	1412.83243	0.17943	8.4684E-05	0.27602	0.00013027	0.45545	0.00021495	471.95164307474545	104.46	0.54167	104.3	104.05	104.59	-0.16791					45	14	4	0	0	0	1.096	1	12999	12999		12.433	0	1	303920			69364	300	48616	48696	75523	75523					0.14252525034316932
RRLRHDPL	8	Unmodified	_RRLRHDPL_					0	0	0			REV__ENST00000609471.1_1_9:139694564-139695182:+|nuORF	REV__ENST00000609471.1_1_9:139694564-139695182:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8174438476562	2	531.817599	1061.62064	-0.26415	-0.00014048	-1.2985	-0.00069054	-1.5626	-0.00083102	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.97924	1	11110	11110		40.573	1.3198	1	3741200	+		69365	35985	48617	48697	75524	75524					0.09229898134026371
RRLRLLDT	8	Unmodified	_RRLRLLDT_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7532958984375	2	521.827632	1041.64071	0.28928	0.00015095	-0.83466	-0.00043555	-0.54538	-0.00028459	521.8269871547873	17.201	0.2065	17.059	16.977	17.183	-0.14278					6	4	2	0	0	0	0.027866	1	134	134		17.365	2.7009	1	11717	+		69366	29042	48618	48698	75525	75525					0.12155649073974928
RRLRRLLP	8	Unmodified	_RRLRRLLP_					0	0	0			REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2560424804688	2	540.367259	1078.71996	-0.9283	-0.00050162	3.065	0.0016562	2.1367	0.0011546	540.3688056040157	48.211	0.39669	48.114	47.929	48.326	-0.097549					15	10	2	0	0	0	0.027866	1	4799	4799		19.36	0	1	178660	+		69367	34111	48619	48699	75526	75526					0.18375340818784025
RRLRRLLP	8	Unmodified	_RRLRRLLP_					0	0	0			REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.367259	1078.71996	-1.0127	-0.00054726	2.7279	0.001474	1.7151	0.00092679	540.3685299304517	48.301	0.51448	48.301	48.105	48.619	0	0.070832	-0.0001002	NaN	19.36	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812690	+		69368	34111	48619	48699							0.18375340818784025
RRLRRLLP	8	Unmodified	_RRLRRLLP_					0	0	0			REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.367259	1078.71996	-1.0852	-0.00058641	2.7866	0.0015058	1.7014	0.0009194	540.3685915341808	48.516	0.45157	48.363	48.159	48.611	-0.15277	0.1331	-3.6679E-05	NaN	19.36	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718640	+		69369	34111	48619	48699							0.18375340818784025
RRLRRLLP	8	Unmodified	_RRLRRLLP_					0	0	0			REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.367259	1078.71996	-1.045	-0.00056466	2.6054	0.0014079	1.5605	0.00084322	540.3684569730256	48.216	0.47589	48.283	48.043	48.519	0.066795	0.053152	-0.00023252	NaN	19.36	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	796000	+		69370	34111	48619	48699							0.18375340818784025
RRLSERAL	8	Unmodified	_RRLSERAL_					0	0	0		DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant;ENST00000495184.5_1_9:286487-368312:+|nuORF	DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7894592285156	2	500.804157	999.593761	-0.029689	-1.4868E-05	-1.854	-0.00092849	-1.8837	-0.00094336	500.80331184737594	92.943	0.16859	92.951	92.887	93.055	0.0077286					6	3	2	0	0	0	0.027866	1	11722	11722		33.516	0	1	78563			69371	664;15546	48620	48700	75527	75527					0.09394789522832525
RRLSFLTSV	9	Unmodified	_RRLSFLTSV_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7640380859375	2	539.822015	1077.62948	-0.52683	-0.00028439	0.82954	0.0004478	0.30271	0.00016341	539.8223334096145	50.116	0.41913	49.935	49.752	50.172	-0.18071					16	10	2	0	0	0	0.024511	1	5086	5086		25.574	6.2141	1	246320			69372	8547	48621	48701	75528	75528					0.0937682697983746
RRLSRRSD	8	Unmodified	_RRLSRRSD_					0	0	0			REV__ENST00000502926.1_2_5:140806427-140807822:+|nuORF	REV__ENST00000502926.1_2_5:140806427-140807822:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3035888671875	2	523.302313	1044.59007	0.49835	0.00026079	0.53394	0.00027941	1.0323	0.0005402	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	1.0009	1	11081	11081		37.159	4.3467	1	11897000	+		69373	33942	48622	48702	75529	75529					0.0695611974899748
RRLTERLAT	9	Unmodified	_RRLTERLAT_					0	0	0		KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant;ENSG00000186994|ENST00000330915|KANK3;nc|ENSG00000186994|Q6NY19-1|KANK3	KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	KANK3|p.Q680Efs*7|1|0.28|ENSG00000186994|chr19:8324994-8324995|TG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.3358764648438	2	558.335821	1114.65709	1.2019	0.00067105	-1.6303	-0.00091026	-0.42843	-0.00023921	558.334950413817	19.533	0.59347	19.3	19.077	19.67	-0.23345					37	11	5	0	0	0	0.82115	1	400	400		37.812	0	1	1427500			69374	9599	48623	48703	75530	75530					0.1043473024008108
RRLWPWGLVL	10	Unmodified	_RRLWPWGLVL_					0	0	0		ENST00000302188.7_1_2:28113810-28113921:-|nuORF	ENST00000302188.7_1_2:28113810-28113921:-|nuORF	ENST00000302188.7_1_2:28113810-28113921:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	648.3937377929688	2	648.3904	1294.76625	1.3712	0.00088907	2.1246	0.0013775	3.4958	0.0022666	648.3917089448291	105.36	0.63876	105.36	105.12	105.76	0					41	15	4	0	0	0	1.1237	1	13547	13547		23.042	4.7804	1	1173700			69375	11948	48624	48704	75531	75531					0.13065360930204406
RRMCVQCRSV	10	Oxidation (M)	_RRM(Oxidation (M))CVQCRSV_		RRM(1)CVQCRSV		RRM(55)CVQCRSV	0	0	1			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.3037109375	2	627.304826	1252.5951	0.013928	8.7372E-06	-0.15952	-0.00010007	-0.14559	-9.1329E-05	627.3046680207864	71.175	0.53344	70.903	70.658	71.191	-0.27185					29	11	3	0	0	0	0.88896	1	8297	8297		54.776	12.38	1	853090	+		69376	27935	48625	48705	75532	75532		829			-0.02109403766576179
RRMFNRKS	8	Unmodified	_RRMFNRKS_					0	0	0			REV__ENST00000479736.1_1_13:98654953-98655121:+|nuORF	REV__ENST00000479736.1_1_13:98654953-98655121:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.8030395507812	2	547.803634	1093.59272	-0.57434	-0.00031463	-2.449	-0.0013416	-3.0234	-0.0016562	547.801424815344	30.93	1.1983	30.689	30.287	31.485	-0.24109					80	29	5	0	0	0	0.89627	1	2005	2005		51.335	17.82	1	1434400	+		69377	33407	48626	48706	75533	75533					0.049662518822970014
RRMGPKVI	8	Oxidation (M)	_RRM(Oxidation (M))GPKVI_		RRM(1)GPKVI		RRM(42)GPKVI	0	0	1			REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	REV__ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.790283203125	2	486.792204	971.569854	-0.75013	-0.00036516	-2.9194	-0.0014211	-3.6695	-0.0017863	486.79058737492784	37.602	1.1274	37.393	36.999	38.126	-0.2092					95	30	5	0	0	0	0.96719	1	3043	3043		42.474	8.9589	1	3324500	+		69378	25463	48627	48707	75534	75534		754			0.08293232764833647
RRMLWAAD	8	Unmodified	_RRMLWAAD_					0	0	0		ENSG00000137965|ENST00000370747|IFI44;IFI44|p.A409P|1|0.21|ENSG00000137965|chr1:78662815-78662815|G/C|missense_variant;ENST00000485662.1_1_1:79126346-79129493:+|nuORF;ENST00000476911.1_1_1:79128352-79129493:+|nuORF	ENSG00000137965|ENST00000370747|IFI44	ENSG00000137965|ENST00000370747|IFI44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.27520751953125	2	509.766186	1017.51782	0.25268	0.00012881	2.8879	0.0014722	3.1406	0.001601	509.765955776738	71.584	1.0292	71.584	70.987	72.017	0					41	26	2	0	0	0	0.027866	1	8602	8602		26.796	2.2769	1	235570			69379	5184	48628	48708	75535	75535					0.009760693510543206
RRMRKKRWKAR	11	Unmodified	_RRMRKKRWKAR_					0	0	0			REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF	REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.287353515625	3	524.659917	1570.95792	2.8031	0.0014707	-3.4972	-0.0018348	-0.69408	-0.00036416	525.3268794192584	18.674	0.299	18.432	18.274	18.573	-0.24256					10	5	3	0	0	0	0.024902	1	293	293		3.4087	1.99	1	14100	+		69380	28887	48629	48709	75536	75536					0.19527958409548773
RRMRRRRRWT	10	Unmodified	_RRMRRRRRWT_					0	0	0		ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.6339416503906	3	510.635882	1528.88582	-0.35391	-0.00018072	-2.3537	-0.0012019	-2.7076	-0.0013826	510.63447806200884	103.19	1.539	103.06	102.45	103.99	-0.12783					79	36	3	0	0	0	1.1031	1	12885	12885		12.207	2.1028	1	331380			69381	11721	48630	48710	75537	75537					0.14253044055840292
RRNIRPNI	8	Unmodified	_RRNIRPNI_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2-YLPM1|1|fusion	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2421875	2	519.817599	1037.62064	-1.0507	-0.0005462	1.8476	0.0009604	0.79682	0.0004142	519.8181042497872	69.072	0.78501	68.811	68.341	69.126	-0.26166					24	18	2	0	0	0	0.027866	1	7998	7998		31.955	5.1588	1	131990			69382	9892	48631	48711	75538	75538					0.10333898134035735
RRNISTTMKLM	11	Unmodified	_RRNISTTMKLM_					0	0	0			REV__nc|ENSG00000167770|Q96FW1-2|OTUB1	REV__nc|ENSG00000167770|Q96FW1-2|OTUB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.9162902832031	3	450.91633	1349.72716	-0.8796	-0.00039662	1.0427	0.00047019	0.16314	7.3563E-05	450.91673342440487	24.349	1.1515	24.301	23.783	24.935	-0.047148					66	25	4	0	0	0	0.97516	1	1043	1043		42.338	1.2291	1	756490	+		69383	36898	48632	48712	75539	75539					0.0662852452203424
RRNLERQRRRR	11	Unmodified	_RRNLERQRRRR_					0	0	0			REV__nc|ENSG00000105619|P0C1Z6-2|TFPT	REV__nc|ENSG00000105619|P0C1Z6-2|TFPT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7843017578125	3	532.656111	1594.9465	-0.72259	-0.00038489	-0.66557	-0.00035452	-1.3882	-0.00073941	532.9910378960438	45.658	0.3048	45.658	45.58	45.885	0					13	8	2	0	0	0	0.024896	1	4453	4453		6.3209	2.7018	1	577720	+		69384	21545	48633	48713	75540	75540					0.1728285263975522
RRNRRAPL	8	Unmodified	_RRNRRAPL_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.3084716796875	2	519.823215	1037.63188	-0.17702	-9.2017E-05	2.674	0.00139	2.497	0.001298	519.8245226042058	49.476	0.66537	49.476	49.212	49.878	0					27	17	2	0	0	0	0.027866	1	5081	5081		35.201	0	1	134410	+		69385	25831	48634	48714	75541	75541					0.11456720228170525
RRNTISSL	8	Unmodified	_RRNTISSL_					0	0	0		ENST00000359660.9_1_5:107195069-107195318:-|nuORF	ENST00000359660.9_1_5:107195069-107195318:-|nuORF	ENST00000359660.9_1_5:107195069-107195318:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7760925292969	2	473.775065	945.535577	0.88556	0.00041956	0.85487	0.00040502	1.7404	0.00082457	473.7755349332668	98.502	0.94627	98.502	98.233	99.179	0					38	21	3	0	0	0	0.81662	1	12587	12587		57.811	3.0466	1	611230			69386	12746	48635	48715	75542	75542					0.06063107877571383
RRPAAALGG	9	Unmodified	_RRPAAALGG_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7593994140625	2	434.759218	867.503883	0.063598	2.765E-05	0.10561	4.5913E-05	0.1692	7.3563E-05	434.75923619358696	86.978	1.558	86.791	86.167	87.725	-0.18696					82	36	4	0	0	0	0.88411	2	10568	10535;10568		33.516	3.674	1	6540900			69387	15752	48636	48716	75543;75544	75544					0.06483159914284897
RRPAAALGG	9	Unmodified	_RRPAAALGG_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7594299316406	2	434.759218	867.503883	0.66526	0.00028923	-0.32382	-0.00014078	0.34144	0.00014844	434.7589968686671	86.998	1.8354	86.856	86.147	87.982	-0.14218					104	43	4	0	0	0	0.96121	2	10608	10558;10608		28.254	0	1	5508400			69388	15752	48636	48716	75545;75546	75546					0.06483159914284897
RRPAAALGG	9	Unmodified	_RRPAAALGG_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7592468261719	2	434.759218	867.503883	0.4777	0.00020768	-0.25664	-0.00011158	0.22106	9.6106E-05	434.75903003403516	86.907	1.794	86.77	86.268	88.062	-0.13734					101	42	4	0	0	0	0.88411	1	10549	10549		33.516	0	1	4266100			69389	15752	48636	48716	75547	75547					0.06483159914284897
RRPAILVSL	9	Unmodified	_RRPAILVSL_					0	0	0			REV__ENST00000464506.1_1_X:13707263-13721992:+|nuORF	REV__ENST00000464506.1_1_X:13707263-13721992:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7743530273438	2	512.834926	1023.6553	1.9717	0.0010112	-1.7401	-0.0008924	0.23156	0.00011875	512.8335258130347	24.258	0.13056	24.077	23.983	24.114	-0.18089					4	2	2	0	0	0	0.024541	1	1011	1011		30.504	7.4612	1	14111	+		69390	32978	48637	48717	75548	75548					0.14441721222135584
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.2322998046875	2	404.232836	806.45112	1.1468	0.00046357	-1.3905	-0.00056207	-0.24367	-9.8499E-05	404.23205253167436	84.32	2.7374	84.32	83.562	86.3	0					145	64	4	0	0	0	1.0472	4	10614	10562;10574;10586;10614		29.842	1.9593	1	14422000	+		69391	29168;36188	48638	48718	75549;75550;75551;75552	75552					0.040152018514731935
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.233154296875	2	404.232836	806.45112	-0.10547	-4.2633E-05	-0.30258	-0.00012231	-0.40804	-0.00016494	404.23247999449234	84.477	3.3436	84.404	82.163	85.507	-0.072769					158	78	4	0	0	0	1.0572	2	10506	10506;10551		28.254	1.4582	1	13931000	+		69392	29168;36188	48638	48718	75553;75554	75553					0.040152018514731935
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.23291015625	2	404.232836	806.45112	1.5545	0.00062839	-1.9852	-0.00080248	-0.43067	-0.00017409	404.2317363749905	84.372	3.2452	84.398	82.917	86.162	0.026558					196	76	5	0	0	0	1.0472	3	10511	10462;10486;10511		29.842	1.5873	1	13913000	+		69393	29168;36188	48638	48718	75555;75556;75557	75557					0.040152018514731935
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2330017089844	2	404.232836	806.45112	1.0198	0.00041225	-1.4334	-0.00057943	-0.41358	-0.00016718	404.2320221194493	84.559	4.1783	84.356	82.19	86.368	-0.20329					189	97	3	0	0	0	1.0574	3	10225	10225;10263;10277		21.702	6.0661	1	18249000	+		69394	29168;36188	48638	48718	75558;75559;75560	75558					0.040152018514731935
RRPCLLVP	8	Unmodified	_RRPCLLVP_					0	0	0		ENST00000375127.5_2_1:20125713-20125803:-|nuORF	ENST00000375127.5_2_1:20125713-20125803:-|nuORF	ENST00000375127.5_2_1:20125713-20125803:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.291259765625	2	477.289297	952.564041	0.47957	0.00022889	3.279	0.0015651	3.7586	0.0017939	477.290701920488	18.638	0.83494	18.507	18.056	18.891	-0.13148					40	16	4	0	0	0	1.0017	1	309	309		37.028	1.8278	1	84328			69395	13150	48639	48719	75561	75561					0.08586134253164346
RRPEVGSGR	9	Unmodified	_RRPEVGSGR_					0	0	0		ENSG00000174989|ENST00000652555|FBXW8	ENSG00000174989|ENST00000652555|FBXW8	ENSG00000174989|ENST00000652555|FBXW8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2823486328125	2	507.283589	1012.55262	0.06711	3.4044E-05	-0.53987	-0.00027387	-0.47276	-0.00023983	507.28339323117126	18.508	1.1808	18.376	18.105	19.286	-0.13147					54	23	5	0	0	0	0.87816	1	315	315		33.922	2.3918	1	2784200			69396	8518	48640	48720	75562	75562					0.04685028483390852
RRPGCPAVLL	10	Unmodified	_RRPGCPAVLL_					0	0	0			REV__ENST00000479193.1_1_13:113534616-113534949:+|nuORF	REV__ENST00000479193.1_1_13:113534616-113534949:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.2713012695312	2	541.318586	1080.62262	2.3803	0.0012885	-2.0942	-0.0011336	0.28611	0.00015488	541.3174162368617	18.392	0.3004	18.15	17.974	18.274	-0.24256					9	5	2	0	0	0	0.03519	1	281	281		37.159	10.466	1	20337	+		69397	33390	48641	48721	75563	75563					0.08553190827615254
RRPGCPAVLL	10	Unmodified	_RRPGCPAVLL_					0	0	0			REV__ENST00000479193.1_1_13:113534616-113534949:+|nuORF	REV__ENST00000479193.1_1_13:113534616-113534949:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.318586	1080.62262	0.50903	0.00027555	-1.1308	-0.00061212	-0.62176	-0.00033657	541.317970538368	18.313	0.29493	18.156	18.002	18.297	-0.15637	0.0032207	0.00021632	NaN	37.159	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29492	+		69398	33390	48641	48721							0.08553190827615254
RRPGMLAPRLL	11	Unmodified	_RRPGMLAPRLL_					0	0	0			REV__ENST00000465079.1_1_1:155948753-155948843:-|nuORF	REV__ENST00000465079.1_1_1:155948753-155948843:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.2648620605469	3	427.26417	1278.77068	-0.45997	-0.00019653	1.0351	0.00044228	0.57518	0.00024576	427.2647893610271	54.057	3.8405	54.057	53.763	57.603	0					418	108	6	0	0	0	1.0684	1	5929	5929		20.03	0	1	57851000	+		69399	32995	48642	48722	75564	75564					0.14244502081487553
RRPHLRGSRL	10	Unmodified	_RRPHLRGSRL_					0	0	0		ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.3772583007812	2	624.381429	1246.7483	-1.911	-0.0011932	1.1609	0.00072483	-0.75014	-0.00046838	624.3822088007437	106.07	0.28349	105.94	105.81	106.09	-0.1328					17	10	2	0	0	0	1.1307	1	13200	13200		26.693	2.1737	1	123180			69400	16161	48643	48723	75565	75565					0.13480038728062027
RRPHSVLRRHQ	11	Unmodified	_RRPHSVLRRHQ_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2835388183594	3	481.283503	1440.82868	-0.010732	-5.1652E-06	0.039146	1.884E-05	0.028414	1.3675E-05	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.0811	1	12940	12940		16.53	1.1924	1	1064100	+		69401	24111	48644	48724	75566	75566					0.1258990005112537
RRPKRREIPLK	11	Unmodified	_RRPKRREIPLK_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.6463928222656	3	483.647671	1447.92118	0.20024	9.6846E-05	-2.5625	-0.0012394	-2.3623	-0.0011425	483.64633390828976	46.582	1.5588	46.485	46.259	47.818	-0.096649					170	42	6	0	0	0	1.0855	1	4579	4579		15.337	2.9046	1	30354000			69402	809	48645	48725	75567	75567					0.2151398506462101
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8568115234375	2	597.856921	1193.69929	-1.6739	-0.0010008	0.44776	0.00026769	-1.2261	-0.00073306	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.0508	2	11886	11886;11904		39.253	6.4404	1	4454900			69403	9672	48646	48726	75568;75569	75568					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8565063476562	2	597.856921	1193.69929	-1.0361	-0.00061944	-0.20101	-0.00012018	-1.2371	-0.00073961	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.0122	2	11863	11644;11863		44.377	3.599	1	4942300			69404	9672	48646	48726	75570;75571	75571					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8563842773438	2	597.856921	1193.69929	-0.69485	-0.00041542	-0.48603	-0.00029058	-1.1809	-0.000706	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	1.0344	2	11784	11784;11798		41.427	5.8083	1	4386000			69405	9672	48646	48726	75572;75573	75572					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8561401367188	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0508	1	11308	11308		39.253	8.9351	1	5655800			69406	9672	48646	48726	75574	75574					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8572998046875	2	597.856921	1193.69929	-0.76793	-0.00045911	-0.079867	-4.7749E-05	-0.8478	-0.00050686	597.8568468929183	94.954	0.64822	94.816	94.506	95.155	-0.13779					39	14	3	0	0	0	1.0122	1	11704	11704		44.377	17.684	1	538710			69407	9672	48646	48726	75575	75575					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8571166992188	2	597.856921	1193.69929	-0.43134	-0.00025788	-0.33131	-0.00019807	-0.76264	-0.00045595	597.8566004314059	95.468	0.86575	95.331	95.112	95.978	-0.13689					46	19	3	0	0	0	1.118	1	11777	11777		30.318	6.795	1	343790			69408	9672	48646	48726	75576	75576					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8562622070312	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.765	1	90.61	90.11	91.11	-0.1552								0	0	0	0.7491	1	11110	11110		42.396	9.5837	1				69409	9672	48646	48726	75577	75577					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8563232421875	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.602	1	91.453	90.953	91.953	-0.1487								0	0	0	0.74072	1	11231	11231		37.812	1.3648	1				69410	9672	48646	48726	75578	75578					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8564453125	2	597.856921	1193.69929	-0.56215	-0.00033608	-0.78641	-0.00047016	-1.3486	-0.00080624	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	1.0002	4	11605	11338;11569;11587;11605		45.972	9.5255	1	5880700			69411	9672	48646	48726	75579;75580;75581;75582	75582					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	598.3588256835938	2	597.856921	1193.69929	-0.90106	-0.00053871	-0.64256	-0.00038416	-1.5436	-0.00092287	598.357733895592	103.83	0.97852	103.71	103.29	104.27	-0.12928					48	27	3	0	0	0	1.118	1	12928	12928		30.318	5.7985	1	387740			69412	9672	48646	48726	75583	75583					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8563842773438	2	597.856921	1193.69929	0.028254	1.6892E-05	-0.51885	-0.0003102	-0.4906	-0.00029331	598.3585788626698	90.988	1.6784	90.848	90.115	91.794	-0.13942					112	39	3	0	0	0	1.0344	1	11085	11085		41.427	0.64845	1	2547700			69413	9672	48646	48726	75584	75584					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8565063476562	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0992	1	11528	11528		32.812	3.6629	1	5598500			69414	9672	48646	48726	75585	75585					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	597.856921	1193.69929	-0.75562	-0.00045175	-0.66591	-0.00039812	-1.4215	-0.00084987	598.3578480965522	94.812	0.6083	94.816	94.575	95.183	0.0041199	-0.032968	-0.00034084	NaN	44.377	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244670			69415	9672	48646	48726							0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	597.856921	1193.69929	-0.47903	-0.00028639	-0.35118	-0.00020995	-0.83021	-0.00049635	597.8566552251002	95.066	0.64854	94.915	94.494	95.142	-0.15186	0.065674	3.5493E-05	NaN	44.377	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274740			69416	9672	48646	48726							0.11018705648416471
RRPLGPKW	8	Unmodified	_RRPLGPKW_					0	0	0			REV__nc|ENSG00000177338|Q8N7U9|LINC00469	REV__nc|ENSG00000177338|Q8N7U9|LINC00469	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.7883605957031	2	505.306336	1008.59812	1.1596	0.00058593	-3.4413	-0.0017389	-2.2818	-0.001153	505.3036398957065	20.449	0.59114	20.518	20.217	20.808	0.068901					19	11	3	0	0	0	0.027866	1	505	505		13.775	9.7901	1	30331	+		69417	36972	48647	48727	75586	75586					0.09416298736414319
RRPLLPASQPL	11	Unmodified	_RRPLLPASQPL_					0	0	0		ENST00000257013.8_1_X:134166773-134167211:+|nuORF	ENST00000257013.8_1_X:134166773-134167211:+|nuORF	ENST00000257013.8_1_X:134166773-134167211:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	625.3676147460938	2	624.382771	1246.75099	0.4578	0.00028584	-3.9048	-0.0024381	-3.447	-0.0021523	624.3802000906014	105.41	0.36747	105.25	105.09	105.45	-0.16484					17	9	2	0	0	0	0.024736	1	13118	13118		29.17	18.905	1	557340			69418	11401	48648	48728	75587	75587					0.13748449342347158
RRPLPTALCV	10	Unmodified	_RRPLPTALCV_					0	0	0		ENST00000497869.5_1_1:1146937-1148774:-|nuORF	ENST00000497869.5_1_1:1146937-1148774:-|nuORF	ENST00000497869.5_1_1:1146937-1148774:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.2764892578125	2	563.331693	1124.64883	-0.66966	-0.00037724	0.69102	0.00038928	0.021365	1.2035E-05	563.3316678093264	81.744	0.23981	81.744	81.63	81.869	0					8	5	2	0	0	0	0.03519	1	10209	10209		40.778	24.305	1	45513			69419	15606	48649	48729	75588	75588					0.09149459999071041
RRPLRMAPLAA	11	Unmodified	_RRPLRMAPLAA_					0	0	0			REV__ENST00000483652.5_1_22:50312390-50319315:+|nuORF	REV__ENST00000483652.5_1_22:50312390-50319315:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.3798217773438	2	626.376966	1250.73938	0.33644	0.00021074	3.9266	0.0024596	4.2631	0.0026703	626.3792889018249	104.56	1.023	104.39	104.02	105.04	-0.16791					95	33	5	0	0	0	1.0465	1	12982	12982		10.866	0	1	2470500	+		69420	33516	48650	48730	75589	75589					0.1240392904737746
RRPLSSRRGTS	11	Unmodified	_RRPLSSRRGTS_					0	0	0			REV__ENST00000368804.5_1_1:152079991-152080243:-|nuORF	REV__ENST00000368804.5_1_1:152079991-152080243:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	424.91021728515625	3	424.912964	1271.71706	-0.60793	-0.00025832	-0.49464	-0.00021018	-1.1026	-0.0004685	424.9127001724938	39.308	1.0729	39.331	38.768	39.84	0.023727					98	29	5	0	0	0	0.9544	1	3265	3265		46.955	9.4468	1	12649000	+		69421	31070	48651	48731	75590	75590					0.09207420903317143
RRPPGEPL	8	Unmodified	_RRPPGEPL_					0	0	0		ENSG00000254726|ENST00000532414|MEX3A	ENSG00000254726|ENST00000532414|MEX3A	ENSG00000254726|ENST00000532414|MEX3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.2652587890625	2	461.266876	920.519199	-1.6026	-0.00073924	-2.3058	-0.0010636	-3.9084	-0.0018028	461.2655843697249	92.32	2.1234	92.177	91.617	93.74	-0.14356					89	49	3	0	0	0	1.0574	1	11351	11351		26.796	1.3459	1	1434600			69422	10883	48652	48732	75591	75591					0.0557602671146924
RRPRCVTAPLP	11	Unmodified	_RRPRCVTAPLP_					0	0	0			REV__ENST00000375743.8_1_1:16270013-16270337:-|nuORF	REV__ENST00000375743.8_1_1:16270013-16270337:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3690185546875	2	633.366598	1264.71864	-0.31781	-0.00020129	4.3816	0.0027752	4.0638	0.0025739	633.3692884562681	93.071	1.2951	93.079	92.225	93.52	0.0077286					82	30	4	0	0	0	0.98218	1	11754	11754		40.778	7.9657	1	1519500	+		69423	31334	48653	48733	75592	75592					0.09687338667731638
RRPRCVTAPLP	11	Unmodified	_RRPRCVTAPLP_					0	0	0			REV__ENST00000375743.8_1_1:16270013-16270337:-|nuORF	REV__ENST00000375743.8_1_1:16270013-16270337:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.37060546875	2	633.366598	1264.71864	-0.49381	-0.00031276	4.3009	0.0027241	3.8071	0.0024113	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.98904	1	12020	12020		39.253	4.1008	1	9845500	+		69424	31334	48653	48733	75593	75593					0.09687338667731638
RRPRRPRRYPW	11	Unmodified	_RRPRRPRRYPW_					0	0	0		ENST00000526510.5_1_11:67168691-67168991:-|nuORF	ENST00000526510.5_1_11:67168691-67168991:-|nuORF	ENST00000526510.5_1_11:67168691-67168991:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7855224609375	3	532.646664	1594.91816	-0.51136	-0.00027237	1.9544	0.001041	1.4431	0.00076865	532.9816932507242	45.553	0.31027	45.597	45.512	45.822	0.043877					11	8	2	0	0	0	0.024828	1	4414	4414		13.508	3.404	1	396910			69425	16124	48654	48734	75594	75594					0.14450154730502618
RRPRRQKPDP	10	Unmodified	_RRPRRQKPDP_					0	0	0		ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.493896484375	3	435.925204	1304.75378	3.6596	0.0015953	-0.87952	-0.0003834	2.7801	0.0012119	435.92458104706526	18.372	0.35006	18.129	17.924	18.274	-0.24256					8	6	2	0	0	0	0.03519	1	282	282		14.694	0	1	13418			69426	1587	48655	48735	75595	75595					0.1135971751989473
RRPSPLAPR	9	Unmodified	_RRPSPLAPR_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.3145141601562	2	525.319974	1048.6254	0.70149	0.00036851	3.2778	0.0017219	3.9793	0.0020904	525.3217941564053	77.86	0.41798	77.618	77.362	77.78	-0.24233					15	9	2	0	0	0	0.024466	1	9289	9289		39.253	5.0803	1	72357			69427	11013	48656	48736	75596	75596					0.10302782276789912
RRPVGIGGT	9	Unmodified	_RRPVGIGGT_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7722473144531	2	456.772326	911.530098	0.66934	0.00030574	-0.96876	-0.0004425	-0.29943	-0.00013677	456.7717653095696	89.004	2.3631	89.004	87.651	90.015	0					120	56	4	0	0	0	0.92825	1	11249	11249		30.504	1.3541	1	3840100			69428	12308	48657	48737	75597	75597					0.07079429085752054
RRPVGIGGT	9	Unmodified	_RRPVGIGGT_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.77215576171875	2	456.772326	911.530098	-0.48279	-0.00022053	0.27966	0.00012774	-0.20313	-9.2785E-05	456.77238741278404	89.196	1.871	89.033	88.554	90.425	-0.1626					101	44	4	0	0	0	0.92825	1	10930	10930		30.504	1.3541	1	5190000			69429	12308	48657	48737	75598	75598					0.07079429085752054
RRPWPMIW	8	Unmodified	_RRPWPMIW_					0	0	0		ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.3090209960938	2	571.308021	1140.60149	-0.49465	-0.0002826	2.4404	0.0013942	1.9458	0.0011116	571.309292551966	40.503	0.8165	40.353	40.078	40.894	-0.1497					51	21	4	0	0	0	0.75307	1	3529	3529		62.978	2.8602	1	3236300			69430	12424	48658	48738	75599	75599					0.03681225518766951
RRPWPMIW	8	Unmodified	_RRPWPMIW_					0	0	0		ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.3092041015625	2	571.308021	1140.60149	-0.081243	-4.6415E-05	1.9136	0.0010933	1.8324	0.0010469	571.308983985849	40.646	0.82487	40.421	40.222	41.047	-0.22501					54	21	4	0	0	0	0.88442	1	3547	3547		52.299	1.1065	1	2841900			69431	12424	48658	48738	75600	75600					0.03681225518766951
RRPWPMIW	8	Unmodified	_RRPWPMIW_					0	0	0		ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	ENST00000337532.9_1_10:28436464-28438936:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	571.308021	1140.60149	-1.31	-0.00074839	3.1721	0.0018122	1.8621	0.0010638	571.3096793882798	40.72	0.92237	40.49	40.196	41.119	-0.23029	0.068354	0.00070552	NaN	62.978	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2638800			69432	12424	48658	48738							0.03681225518766951
RRPWRVARERW	11	Unmodified	_RRPWRVARERW_					0	0	0			REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3008422851562	3	523.299153	1566.87563	4.203	0.0021994	-2.0384	-0.0010667	2.1646	0.0011327	523.2980277353149	17.696	0.84043	17.446	17.276	18.116	-0.25049					31	16	3	0	0	0	1.1135	1	193	193		6.6596	3.0405	1	88826	+		69433	32463	48659	48739	75601	75601					0.1148675960221226
RRQAAEPE	8	Unmodified	_RRQAAEPE_					0	0	0		ENST00000489548.1_1_6:13272670-13278506:+|nuORF	ENST00000489548.1_1_6:13272670-13278506:+|nuORF	ENST00000489548.1_1_6:13272670-13278506:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2953796386719	2	478.749047	955.483542	2.1199	0.0010149	1.2311	0.00058937	3.3509	0.0016043	478.7493100544196	24.092	0.70274	23.911	23.582	24.285	-0.18089					38	15	4	0	0	0	0.027866	1	1017	1017		53.351	0	1	552680			69434	15414	48660	48740	75602	75602					0.004019444638061032
RRQERHKQLLE	11	Unmodified	_RRQERHKQLLE_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.285888671875	3	498.28669	1491.83824	-0.20154	-0.00010042	1.808	0.00090091	1.6065	0.00080049	498.2874973523031	17.348	0.55155	17.141	16.913	17.464	-0.20669					15	10	2	0	0	0	1.0563	1	168	168		23.378	4.8469	1	65780	+		69435	26733	48661	48741	75603	75603					0.1119962354598556
RRQERHKQLLE	11	Unmodified	_RRQERHKQLLE_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	498.28669	1491.83824	3.7204	0.0018538	-1.5195	-0.00075712	2.201	0.0010967	498.62046747374336	17.176	0.27219	17.176	17.028	17.3	0	0.0049162	-0.003513	NaN	23.378	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18970	+		69436	26733	48661	48741							0.1119962354598556
RRQERHKQLLE	11	Unmodified	_RRQERHKQLLE_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	498.28669	1491.83824	0.43243	0.00021547	1.5179	0.00075635	1.9503	0.00097183	498.2874033989894	17.319	0.18151	17.176	17.048	17.229	-0.14278	0.005061	0.0010275	NaN	23.378	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13703	+		69437	26733	48661	48741							0.1119962354598556
RRQERHKQLLE	11	Unmodified	_RRQERHKQLLE_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	498.28669	1491.83824	1.2333	0.00061454	0.56754	0.0002828	1.8008	0.00089733	498.28698359272926	17.346	0.45062	17.192	17.007	17.458	-0.15403	0.020378	-0.00039318	NaN	23.378	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61282	+		69438	26733	48661	48741							0.1119962354598556
RRQILLLQRRP	11	Unmodified	_RRQILLLQRRP_					0	0	0		ENST00000504920.5_1_4:7065798-7065906:-|nuORF	ENST00000504920.5_1_4:7065798-7065906:-|nuORF	ENST00000504920.5_1_4:7065798-7065906:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.758056640625	3	483.647671	1447.92118	-0.52097	-0.00025197	-2.1458	-0.0010378	-2.6668	-0.0012898	483.6464972624283	48.178	1.601	48.08	47.78	49.381	-0.097553					135	42	4	0	0	0	0.024884	1	4968	4968		10.587	7.5608	1	3644600			69439	15722	48662	48742	75604	75604					0.2151398506462101
RRQILLLQRRP	11	Unmodified	_RRQILLLQRRP_					0	0	0		ENST00000504920.5_1_4:7065798-7065906:-|nuORF	ENST00000504920.5_1_4:7065798-7065906:-|nuORF	ENST00000504920.5_1_4:7065798-7065906:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.64678955078125	3	483.647671	1447.92118	0.025197	1.2187E-05	-2.4128	-0.001167	-2.3876	-0.0011548	483.64642593124324	46.982	1.4851	46.713	46.526	48.011	-0.26939					176	40	5	0	0	0	1.1045	1	4554	4554		10.104	2.7042	1	8321800			69440	15722	48662	48742	75605	75605					0.2151398506462101
RRQIRLSSPER	11	Unmodified	_RRQIRLSSPER_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.9444885253906	3	466.607652	1396.80113	0.02491	1.1623E-05	0.81248	0.00037911	0.83739	0.00039073	466.60793572858927	100.17	2.0135	100.17	99.98	101.99	0					84	47	2	0	0	0	1.0408	1	12788	12788		27.644	5.0823	1	846240			69441	4910	48663	48743	75606	75606					0.11859952000190788
RRQIRLSSPER	11	Unmodified	_RRQIRLSSPER_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.6084289550781	3	466.607652	1396.80113	1.035	0.00048292	-0.16129	-7.5257E-05	0.87367	0.00040766	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.0921	1	12823	12823		13.508	0	1	655350			69442	4910	48663	48743	75607	75607					0.11859952000190788
RRQIWSYW	8	Unmodified	_RRQIWSYW_					0	0	0		chr12:6534569-6536494|151|66.14|0.78|6.41|+|0|GAPDH,GAPDH|1	chr12:6534569-6536494|151|66.14|0.78|6.41|+|0|GAPDH,GAPDH|1	chr12:6534569-6536494|151|66.14|0.78|6.41|+|0|GAPDH,GAPDH|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.810791015625	2	597.811982	1193.60941	-0.50815	-0.00030378	-0.34416	-0.00020574	-0.85231	-0.00050952	597.8116249568675	73.852	0.48761	73.575	73.288	73.776	-0.2769					32	12	4	0	0	0	0.97924	1	8694	8694		40.573	0.51445	1	1439900			69443	326	48664	48744	75608	75608					0.020350760398969214
RRQKEPLPAL	10	Unmodified	_RRQKEPLPAL_					0	0	0			REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|130|2|anti-sense	REV__HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|130|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.365478515625	2	604.367121	1206.71969	0.12428	7.5109E-05	-0.8283	-0.0005006	-0.70403	-0.00042549	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.1165	1	12897	12897		19.997	0	1	4482300	+		69444	36104	48665	48745	75609	75609					0.12459876308275852
RRQKKRAEQEL	11	Unmodified	_RRQKKRAEQEL_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.283203125	3	481.283057	1440.82734	0.24413	0.0001175	0.55302	0.00026616	0.79715	0.00038365	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0764	1	12992	12992		17.833	6.3785	1	1053600	+		69445	19804	48666	48746	75610	75610					0.1245622117169205
RRQKKRAEQEL	11	Unmodified	_RRQKKRAEQEL_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.6184387207031	3	481.283057	1440.82734	1.0554	0.00050794	-0.20876	-0.00010047	0.84662	0.00040746	481.2829139480189	99.849	1.4264	99.714	98.502	99.929	-0.13526					95	35	3	0	0	0	1.0674	1	12395	12395		20.315	6.8071	1	417150	+		69446	19804	48666	48746	75611	75611					0.1245622117169205
RRQKKRAEQEL	11	Unmodified	_RRQKKRAEQEL_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.28265380859375	3	481.283057	1440.82734	0.3888	0.00018713	0.55365	0.00026646	0.94245	0.00045359	481.28322550437986	101.41	2.0202	101.23	100.66	102.68	-0.17178					149	48	5	0	0	0	1.0648	1	12617	12617		21.032	3.8655	1	742900	+		69447	19804	48666	48746	75612	75612					0.1245622117169205
RRQKKRHFI	9	Unmodified	_RRQKKRHFI_					0	0	0			REV__ENST00000315596.14_2_13:33347406-33347460:+|nuORF	REV__ENST00000315596.14_2_13:33347406-33347460:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	635.380859375	2	634.894172	1267.77379	0.034626	2.1984E-05	-2.8235	-0.0017926	-2.7889	-0.0017707	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	0.90698	1	13386	13386		31.955	1.4512	1	2042800	+		69448	30268	48667	48747	75613	75613					0.15061513250498137
RRQKREKHK	9	Unmodified	_RRQKREKHK_					0	0	0		nc|ENSG00000132970|Q9UPY6-2|WASF3	nc|ENSG00000132970|Q9UPY6-2|WASF3	nc|ENSG00000132970|Q9UPY6-2|WASF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.59271240234375	3	422.593566	1264.75887	0.31209	0.00013189	-2.0781	-0.00087818	-1.766	-0.00074629	422.59259397297745	49.759	3.148	49.654	48.913	52.061	-0.10558					256	83	5	0	0	0	0.94779	1	5112	5112		29.17	0	1	11811000			69449	18278	48668	48748	75614	75614					0.13708021382490188
RRQLGPLAELL	11	Unmodified	_RRQLGPLAELL_					0	0	0			REV__ENST00000259608.7_1_9:35650062-35650556:-|nuORF	REV__ENST00000259608.7_1_9:35650062-35650556:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5931396484375	3	422.594461	1264.76155	-0.08907	-3.7641E-05	-4.0755	-0.0017223	-4.1646	-0.0017599	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0327	1	5312	5312		29.551	0.38069	1	15587000	+		69450	29591	48669	48749	75615	75615					0.13976431996798055
RRQPERLRSSI	11	Unmodified	_RRQPERLRSSI_					0	0	0			REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	466.6084899902344	3	466.607652	1396.80113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.78	1	99.78	99.28	100.28	0								0	0	0	1.4418	1	12759	12759		18.531	0	1		+		69451	29651	48670	48750	75616	75616					0.11859952000213525
RRQPERLRSSI	11	Unmodified	_RRQPERLRSSI_					0	0	0			REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	466.60858154296875	3	466.607652	1396.80113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.864	1	99.864	99.364	100.36	0								0	0	0	1.3321	1	12771	12771		24.232	1.6702	1		+		69452	29651	48670	48750	75617	75617					0.11859952000213525
RRQPERLRSSI	11	Unmodified	_RRQPERLRSSI_					0	0	0			REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.9402160644531	3	466.607652	1396.80113	0.19292	9.0016E-05	0.84159	0.00039269	1.0345	0.00048271	466.6079363438645	99.826	0.91731	99.837	99.179	100.1	0.010109					66	22	4	0	0	0	1.0281	3	12748	12723;12737;12748		30.569	6.337	1	854030	+		69453	29651	48670	48750	75618;75619;75620	75620					0.11859952000213525
RRQPERLRSSI	11	Unmodified	_RRQPERLRSSI_					0	0	0			REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.6071472167969	3	466.607652	1396.80113	1.035	0.00048292	-0.16129	-7.5257E-05	0.87367	0.00040766	466.6074539266798	100.2	2.5444	100.19	99.299	101.84	-0.0050812					131	62	4	0	0	0	1.0022	1	12743	12743		36.318	15.285	1	655350	+		69454	29651	48670	48750	75621	75621					0.11859952000213525
RRQPERLRSSI	11	Unmodified	_RRQPERLRSSI_					0	0	0			REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.6080627441406	3	466.607652	1396.80113	-0.089898	-4.1947E-05	0.94141	0.00043927	0.85152	0.00039732	466.6080804541521	100.51	2.3323	100.33	99.316	101.65	-0.17088					127	63	3	0	0	0	1.0788	1	12498	12498		17.167	2.4731	1	684720	+		69455	29651	48670	48750	75622	75622					0.11859952000213525
RRQQREKECSR	11	Unmodified	_RRQQREKECSR_					0	0	0		nc|ENSG00000243156|Q7RTP6-5|MICAL3	nc|ENSG00000243156|Q7RTP6-5|MICAL3	nc|ENSG00000243156|Q7RTP6-5|MICAL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2582702636719	3	492.591785	1474.75353	-0.12446	-6.1307E-05	-1.0035	-0.00049432	-1.128	-0.00055562	492.5913123292393	41.714	0.52962	41.737	41.429	41.958	0.023003					25	14	2	0	0	0	0.024759	1	3716	3716		29.551	6.9892	1	190190			69456	18759	48671	48751	75623	75623					0.03513929737732724
RRQQRLPGRL	10	Unmodified	_RRQQRLPGRL_					0	0	0			REV__ENST00000366623.7_1_1:233463519-233463630:+|nuORF	REV__ENST00000366623.7_1_1:233463519-233463630:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2643127441406	3	427.26545	1278.77452	-0.029898	-1.2774E-05	-2.351	-0.0010045	-2.3809	-0.0010173	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0816	1	5941	5941		35.152	7.0705	1	50736000	+		69457	30980	48672	48752	75624	75624					0.1462830789957934
RRQSNILMRRR	11	Unmodified	_RRQSNILMRRR_					0	0	0			REV__ENST00000371485.7_1_10:95262882-95262948:+|nuORF	REV__ENST00000371485.7_1_10:95262882-95262948:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.9588928222656	3	495.960032	1484.85827	-0.078838	-3.9101E-05	-2.578	-0.0012786	-2.6568	-0.0013177	495.9587845255512	102.1	1.6695	102.11	101.47	103.14	0.0073471					102	39	3	0	0	0	1.0811	1	13036	13036		16.53	0.52308	1	776030	+		69458	31164	48673	48753	75625	75625					0.13523096004951185
RRQSSSSAGDS	11	Unmodified	_RRQSSSSAGDS_					0	0	0		ENSG00000183011|ENST00000575771|NAA38	ENSG00000183011|ENST00000575771|NAA38	ENSG00000183011|ENST00000575771|NAA38	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2677001953125	2	569.26579	1136.51703	2.7675	0.0015754	0.77543	0.00044143	3.5429	0.0020169	569.2661420939212	18.62	2.7683	18.377	17.478	20.247	-0.24256					129	55	4	0	0	0	0.95882	1	297	297		45.972	6.7194	1	322430			69459	9187	48674	48754	75626	75626					-0.045770985549324905
RRQTRSLV	8	Unmodified	_RRQTRSLV_					0	0	0			REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.29205322265625	2	508.309606	1014.60466	-0.68503	-0.00034821	-2.6109	-0.0013272	-3.296	-0.0016754	508.810338548809	64.77	0.23684	64.567	64.38	64.617	-0.20253					7	5	2	0	0	0	0.027866	1	7352	7352		65.803	4.8312	1	92639	+		69460	27414	48675	48755	75627	75627					0.09794191897140081
RRQVHDKY	8	Unmodified	_RRQVHDKY_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2582397460938	2	551.299239	1100.58392	-0.076837	-4.236E-05	4.4024	0.002427	4.3256	0.0023847	551.3001387718035	63.906	0.50771	63.714	63.493	64	-0.19243					17	12	2	0	0	0	0.027866	1	7214	7214		71.296	4.8664	1	193680	+		69461	23009	48676	48756	75628	75628					0.03765601517466166
RRRAQLTP	8	Unmodified	_RRRAQLTP_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.3036193847656	2	499.304324	996.594095	3.1271	0.0015614	-3.0738	-0.0015347	0.053346	2.6636E-05	499.3026631654814	19.104	0.69167	19.17	18.945	19.637	0.066195					22	13	3	0	0	0	1.0574	1	332	332		23.042	0	1	69486	+		69462	19302	48677	48757	75629	75629					0.09566209242689183
RRRDDIAR	8	Unmodified	_RRRDDIAR_					0	0	0		nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8	nc|ENSG00000167447|Q8ND04-2|SMG8	nc|ENSG00000167447|Q8ND04-2|SMG8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2825927734375	2	529.302313	1056.59007	-0.60452	-0.00031997	4.3323	0.0022931	3.7278	0.0019731	529.3039644096715	47.886	0.42654	47.952	47.839	48.265	0.066795					18	11	2	0	0	0	0.027866	1	4832	4832		30.504	12.242	1	649030			69463	7688	48678	48758	75630	75630					0.0640411974898143
RRREAELRSYY	11	Unmodified	_RRREAELRSYY_					0	0	0			REV__nc|ENSG00000130396|P55196-3|AFDN	REV__nc|ENSG00000130396|P55196-3|AFDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7467956542969	3	500.267296	1497.78006	0.18371	9.1905E-05	0.82193	0.00041118	1.0056	0.00050309	500.2676182229252	52.949	0.19979	52.822	52.713	52.913	-0.12705					6	4	2	0	0	0	0.024851	1	5525	5525		21.032	5.1116	1	61013	+		69464	23111	48679	48759	75631	75631					0.051079419007010074
RRREAIIP	8	Unmodified	_RRREAIIP_					0	0	0		ENST00000450178.5_1_22:29138171-29140604:+|nuORF	ENST00000450178.5_1_22:29138171-29140604:+|nuORF	ENST00000450178.5_1_22:29138171-29140604:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7925720214844	2	505.814525	1009.6145	-1.296	-0.00065554	-2.771	-0.0014016	-4.067	-0.0020572	505.8123941784666	44.618	0.20334	44.469	44.39	44.593	-0.1488					8	5	2	0	0	0	0.027866	1	4275	4275		45.952	13.997	1	63596			69465	14510	48680	48760	75632	75632					0.11007379902514458
RRRGGGRTT	9	Unmodified	_RRRGGGRTT_					0	0	0			REV__ENST00000421827.2_1_1:26632909-26633014:-|nuORF	REV__ENST00000421827.2_1_1:26632909-26633014:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2828063964844	2	508.794655	1015.57476	-0.0071588	-3.6423E-06	2.8293	0.0014395	2.8221	0.0014359	508.7962293706831	20.254	0.33313	20.086	19.864	20.197	-0.16774					9	6	2	0	0	0	0.024477	1	530	530		27.882	4.8398	1	25164	+		69466	32189	48681	48761	75633	75633					0.06759252951803774
RRRGGGRTT	9	Unmodified	_RRRGGGRTT_					0	0	0			REV__ENST00000421827.2_1_1:26632909-26633014:-|nuORF	REV__ENST00000421827.2_1_1:26632909-26633014:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.794655	1015.57476	0.8063	0.00041024	1.5321	0.00077955	2.3384	0.0011898	508.7954821140182	20.35	0.48767	20.154	19.947	20.435	-0.19577	0.033975	-0.00050199	NaN	27.882	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21564	+		69467	32189	48681	48761							0.06759252951803774
RRRGIALI	8	Unmodified	_RRRGIALI_					0	0	0		ENSG00000138794|ENST00000265164|CASP6	ENSG00000138794|ENST00000265164|CASP6	ENSG00000138794|ENST00000265164|CASP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77764892578125	2	477.81961	953.624667	-0.068495	-3.2728E-05	-1.7207	-0.00082218	-1.7892	-0.00085491	477.8189100066791	27.273	0.14291	27.26	27.134	27.277	-0.012983					5	3	2	0	0	0	0.027866	1	1465	1465		14.664	0	1	44827			69468	5287	48682	48762	75634	75634					0.14599987627741484
RRRGKFVPA	9	Unmodified	_RRRGKFVPA_					0	0	0			REV__ENST00000490689.3_1_3:157821611-157821770:-|nuORF	REV__ENST00000490689.3_1_3:157821611-157821770:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8350830078125	2	543.835791	1085.65703	1.1679	0.00063517	-2.7658	-0.0015041	-1.5978	-0.00086896	543.8342148057066	19.284	0.69296	19.05	18.78	19.473	-0.23345					37	13	4	0	0	0	0.88411	1	382	382		33.516	0.70317	1	617520	+		69469	33708	48683	48763	75635	75635					0.11762775030751982
RRRIQIGF	8	Unmodified	_RRRIQIGF_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3251953125	2	523.322517	1044.63048	0.39218	0.00020524	1.5404	0.00080612	1.9326	0.0010114	523.3233407921191	71.887	1.2929	71.897	71.318	72.611	0.0097733					110	33	5	0	0	0	0.88442	1	8700	8700		52.299	2.2746	1	15419000	+		69470	20873	48684	48764	75636	75636					0.10995086139428167
RRRLLQWLSP	10	Unmodified	_RRRLLQWLSP_					0	0	0			REV__ENST00000590083.5_1_19:1228816-1229167:-|nuORF	REV__ENST00000590083.5_1_19:1228816-1229167:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2591552734375	3	442.270201	1323.78877	-0.21579	-9.5436E-05	0.49704	0.00021983	0.28126	0.00012439	442.2705156050287	27.505	0.2945	27.492	27.427	27.722	-0.012983					10	7	2	0	0	0	0.03519	1	1515	1515		26.063	10.726	1	320820	+		69471	35692	48685	48765	75637	75637					0.1398296032784856
RRRLLSRERE	10	Unmodified	_RRRLLSRERE_					0	0	0			REV__nc|ENSG00000206140|A6NGB0-1|TMEM191C	REV__nc|ENSG00000206140|A6NGB0-1|TMEM191C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.6081848144531	3	457.607764	1369.80146	0.98273	0.00044971	-0.51799	-0.00023704	0.46474	0.00021267	457.6076861640624	98.645	1.9478	98.521	97.849	99.796	-0.12413					135	49	3	0	0	0	1.1138	1	12223	12223		17.833	0	1	291450	+		69472	28702	48686	48766	75638	75638					0.13135371720090916
RRRLWRWWKLQ	11	Unmodified	_RRRLWRWWKLQ_					0	0	0		chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.2561950683594	4	421.750931	1682.97462	-0.42697	-0.00018008	3.8167	0.0016097	3.3897	0.0014296	421.7525487344968	20.82	1.5211	20.597	20.266	21.787	-0.22344					94	30	5	0	0	0	0.024902	1	688	688		3.4087	3.0373	1	681450			69473	322	48687	48767	75639	75639					0.1604478256715538
RRRLWRWWKLQ	11	Unmodified	_RRRLWRWWKLQ_					0	0	0		chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|522|49.76|0.0|22.25|+|1|HNRNPA1,HNRNPA1|2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		4	421.750931	1682.97462	0.71372	0.00030101	2.7187	0.0011466	3.4324	0.0014476	421.7520703364147	20.751	1.1781	20.555	20.236	21.415	-0.19577	0.017642	-0.00075822	NaN	1.4188	74	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	867480			69474	322	48687	48767							0.1604478256715538
RRRNYFAI	8	Unmodified	_RRRNYFAI_					0	0	0		ENST00000473523.1_1_3:85008309-85008745:+|nuORF	ENST00000473523.1_1_3:85008309-85008745:+|nuORF	ENST00000473523.1_1_3:85008309-85008745:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.2791137695312	2	548.312149	1094.60975	-0.70125	-0.0003845	-3.6582	-0.0020058	-4.3594	-0.0023903	548.3099892344669	77.191	1.1625	76.98	76.668	77.83	-0.21087					57	27	3	0	0	0	0.027866	1	9611	9611		44.531	15.382	1	1847500			69475	15011	48688	48768	75640	75640					0.0662249575975693
RRRPGLRA	8	Unmodified	_RRRPGLRA_					0	0	0			REV__ENST00000291442.3_1_19:17356425-17356737:-|nuORF	REV__ENST00000291442.3_1_19:17356425-17356737:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.29534912109375	2	491.312484	980.610414	-0.48254	-0.00023708	-2.7435	-0.0013479	-3.226	-0.001585	491.3110810075656	56.788	0.31583	56.623	56.497	56.813	-0.16431					17	8	3	0	0	0	0.027866	1	6301	6301		33.516	0	1	270270	+		69476	29944	48689	48769	75641	75641					0.11933335199455541
RRRRDLTA	8	Unmodified	_RRRRDLTA_					0	0	0		ENST00000461864.5_1_3:136580731-136580812:-|nuORF	ENST00000461864.5_1_3:136580731-136580812:-|nuORF	ENST00000461864.5_1_3:136580731-136580812:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.3137817382812	2	522.312681	1042.61081	-0.16174	-8.4479E-05	2.7345	0.0014283	2.5728	0.0013438	522.3139699214305	45.923	0.62358	45.827	45.564	46.187	-0.096649					49	16	4	0	0	0	0.6248	2	4386	4386;4410		73.975	15.193	1	4293100			69477	14693	48690	48770	75642;75643	75642					0.09120710128649989
RRRRDLTA	8	Unmodified	_RRRRDLTA_					0	0	0		ENST00000461864.5_1_3:136580731-136580812:-|nuORF	ENST00000461864.5_1_3:136580731-136580812:-|nuORF	ENST00000461864.5_1_3:136580731-136580812:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.3138427734375	2	522.312681	1042.61081	-0.094177	-4.919E-05	2.6678	0.0013934	2.5736	0.0013442	522.313932304631	46.109	0.75551	45.848	45.557	46.313	-0.26118					58	19	4	0	0	0	0.50239	2	4404	4404;4427		85.359	15.745	1	3410200			69478	14693	48690	48770	75644;75645	75644					0.09120710128649989
RRRRDLTA	8	Unmodified	_RRRRDLTA_					0	0	0		ENST00000461864.5_1_3:136580731-136580812:-|nuORF	ENST00000461864.5_1_3:136580731-136580812:-|nuORF	ENST00000461864.5_1_3:136580731-136580812:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.3134155273438	2	522.312681	1042.61081	-0.70101	-0.00036614	3.0995	0.0016189	2.3985	0.0012528	522.3141640631737	46.018	0.77145	45.815	45.458	46.23	-0.20226					54	20	4	0	0	0	0.50239	1	4391	4391		85.359	16.573	1	3656800			69479	14693	48690	48770	75646	75646					0.09120710128649989
RRRRKHRRMLR	11	Unmodified	_RRRRKHRRMLR_					0	0	0			REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7450866699219	4	406.006468	1619.99677	0.036809	1.4944E-05	1.072	0.00043525	1.1088	0.00045019	406.2577504718231	45.634	0.30051	45.482	45.244	45.544	-0.15156					11	8	2	0	0	0	0.024904	1	4393	4393		1.523	1.1825	1	332290	+		69480	25377	48691	48771	75647	75647					0.21156683763911133
RRRRKKKRQR	10	Unmodified	_RRRRKKKRQR_					0	0	0		ENST00000361428.2_3_6:43308074-43308122:-|nuORF	ENST00000361428.2_3_6:43308074-43308122:-|nuORF	ENST00000361428.2_3_6:43308074-43308122:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	489.9712829589844	3	489.994176	1466.9607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.09	111.59	112.59	0.0077286								0	0	0	0.77833	1	14010	14010		0.48304	0	1				69481	12797	48692	48772	75648	75648					0.2458954985870605
RRRRKRRHIT	10	Unmodified	_RRRRKRRHIT_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7914733886719	3	478.974893	1433.90285	-0.32226	-0.00015436	-0.40392	-0.00019347	-0.72618	-0.00034782	478.97456335769726	45.319	1.2099	45.108	44.637	45.846	-0.21109					94	33	4	0	0	0	0.03519	1	4381	4381		10.104	6.4848	1	712310	+		69482	36460	48693	48773	75649	75649					0.2032528793331494
RRRRLQGEEQA	11	Unmodified	_RRRRLQGEEQA_					0	0	0			REV__ENST00000380748.5_1_21:40717198-40720958:-|nuORF	REV__ENST00000380748.5_1_21:40717198-40720958:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.9282531738281	3	466.927274	1397.75999	-0.51716	-0.00024148	1.9894	0.00092891	1.4722	0.00068743	466.9282451536479	24.057	0.78349	24.057	23.78	24.563	0					54	17	4	0	0	0	0.99648	1	1016	1016		37.6	1.2823	1	2190600	+		69483	31495	48694	48774	75650	75650					0.07702190960776534
RRRRMLINSQR	11	Unmodified	_RRRRMLINSQR_					0	0	0		ENST00000371485.7_1_10:95262882-95262948:+|nuORF	ENST00000371485.7_1_10:95262882-95262948:+|nuORF	ENST00000371485.7_1_10:95262882-95262948:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.9590759277344	3	495.960032	1484.85827	-0.078838	-3.9101E-05	-2.578	-0.0012786	-2.6568	-0.0013177	495.9587845255512	102.1	1.6695	102.11	101.47	103.14	0.0073471					102	39	3	0	0	0	1.0855	1	13062	13062		15.337	2.9046	1	776030			69484	12997	48695	48775	75651	75651					0.13523096004973922
RRRRNMVKISY	11	Unmodified	_RRRRNMVKISY_					0	0	0			REV__ENSG00000139971|ENST00000267485|ARMH4	REV__ENSG00000139971|ENST00000267485|ARMH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.81341552734375	3	493.621016	1477.84122	-0.76336	-0.00037681	0.4992	0.00024642	-0.26416	-0.00013039	493.6212314884579	30.429	1.2078	30.185	29.862	31.07	-0.24415					70	28	4	0	0	0	0.024823	1	1904	1904		26.75	7.487	1	936500	+		69485	23976	48696	48776	75652	75652					0.1214117539916515
RRRRNMVKISY	11	Unmodified	_RRRRNMVKISY_					0	0	0			REV__ENSG00000139971|ENST00000267485|ARMH4	REV__ENSG00000139971|ENST00000267485|ARMH4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	493.621016	1477.84122	-0.64183	-0.00031682	0.2781	0.00013728	-0.36373	-0.00017954	493.6211279323981	30.368	1.2822	30.19	29.824	31.106	-0.17818	0.025058	9.4301E-05	NaN	26.75	69	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811570	+		69486	23976	48696	48776							0.1214117539916515
RRRRNRTY	8	Unmodified	_RRRRNRTY_					0	0	0			REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.342041015625	2	589.342304	1176.67005	-1.3447	-0.00079247	2.1967	0.0012946	0.85198	0.00050211	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	0.97924	1	11905	11905		40.573	11.403	1	13724000	+		69487	33450	48697	48777	75653	75653					0.08878606142843637
RRRRNRTY	8	Unmodified	_RRRRNRTY_					0	0	0			REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3429565429688	2	589.342304	1176.67005	-1.6034	-0.00094497	2.536	0.0014946	0.93261	0.00054963	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0574	1	10972	10972		26.796	1.222	1	5827400	+		69488	33450	48697	48777	75654	75654					0.08878606142843637
RRRRNRTY	8	Unmodified	_RRRRNRTY_					0	0	0			REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3428344726562	2	589.342304	1176.67005	-1.3212	-0.00077864	2.3479	0.0013837	1.0267	0.0006051	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0338	1	11214	11214		31.955	2.7848	1	5175100	+		69489	33450	48697	48777	75655	75655					0.08878606142843637
RRRRNRTY	8	Unmodified	_RRRRNRTY_					0	0	0			REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3433837890625	2	589.342304	1176.67005	-0.17644	-0.00010399	1.5096	0.00088965	1.3331	0.00078566	589.343094607947	95.492	2.0638	95.369	94.554	96.618	-0.12251					103	47	4	0	0	0	1.0239	1	11794	11794		33.516	0.70317	1	959980	+		69490	33450	48697	48777	75656	75656					0.08878606142843637
RRRRPFLFFF	10	Unmodified	_RRRRPFLFFF_					0	0	0			REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28314208984375	3	481.282441	1440.82549	0.87515	0.00042119	1.4505	0.00069812	2.3257	0.0011193	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.102	1	12552	12552		11.636	0.18131	1	1033300	+		69491	29361	48698	48778	75657	75657					0.12271256944382003
RRRRRERPWR	10	Unmodified	_RRRRRERPWR_					0	0	0		ENST00000278823.6_1_11:62366051-62368981:-|nuORF	ENST00000278823.6_1_11:62366051-62368981:-|nuORF	ENST00000278823.6_1_11:62366051-62368981:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	3	508.63828	1522.89301	-0.58246	-0.00029626	-0.52058	-0.00026478	-1.103	-0.00056104	508.6370494877608	26.155	0.32179	26.155	26.043	26.365	0					9	7	2	0	0	0	0.03519	1	1295	1295		20.837	1.5745	1	91147			69492	11702	48699	48779	75658	75658					0.15248099927907788
RRRRRRERRLF	11	Unmodified	_RRRRRRERRLF_					0	0	0		ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.8984680175781	4	415.010907	1656.01452	0.32344	0.00013423	-0.87869	-0.00036466	-0.55525	-0.00023043	415.26115699506977	25.074	0.21334	25.154	24.961	25.174	0.08009					6	4	2	0	0	0	0.024902	1	1079	1079		1.4188	1.0782	1	29386			69493	11386	48700	48780	75659	75659					0.21275722290420163
RRRRRRRRHSA	11	Unmodified	_RRRRRRRRHSA_					0	0	0		ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7688598632812	3	521.656445	1561.94751	-0.96672	-0.0005043	2.0658	0.0010777	1.0991	0.00057336	521.6575448049596	55.385	1.796	55.483	55.257	57.053	0.098015					85	49	2	0	0	0	0.024816	1	6053	6053		21.78	8.8229	1	520550			69494	12682	48701	48781	75660	75660					0.18901111799345927
RRRRRRRRRHY	11	Unmodified	_RRRRRRRRRHY_					0	0	0		ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.3526611328125	3	575.354878	1723.0428	0.074838	4.3058E-05	-3.754	-0.0021599	-3.6791	-0.0021168	575.3526068131175	46.561	0.49494	46.464	46.259	46.754	-0.096653					53	13	5	0	0	0	1.1135	1	4506	4506		5.6988	4.28	1	15650000			69495	12426	48702	48782	75661	75661					0.2102046499037442
RRRRRRRRRHY	11	Unmodified	_RRRRRRRRRHY_					0	0	0		ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	575.354878	1723.0428	-0.26694	-0.00015359	-3.7168	-0.0021385	-3.9837	-0.0022921	575.3525261419088	46.797	0.20927	46.528	46.452	46.662	-0.26939	0.031972	6.2552E-05	NaN	5.6988	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151470			69496	12426	48702	48782							0.2102046499037442
RRRRRRTFHIW	11	Unmodified	_RRRRRRTFHIW_					0	0	0		ENST00000317613.10_1_9:116303752-116304061:+|nuORF	ENST00000317613.10_1_9:116303752-116304061:+|nuORF	ENST00000317613.10_1_9:116303752-116304061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.830810546875	3	547.325814	1638.95561	0.13741	7.5208E-05	-1.2866	-0.00070417	-1.1492	-0.00062897	547.3251614125782	18.764	0.99064	18.56	17.767	18.757	-0.20371					56	19	4	0	0	0	0.024876	1	307	307		13.508	4.2961	1	142660			69497	12166	48703	48783	75662	75662					0.16169245996115933
RRRRRWLFWRR	11	Unmodified	_RRRRRWLFWRR_					0	0	0			REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF	REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.8814697265625	4	436.764638	1743.02945	0.54377	0.0002375	2.3647	0.0010328	2.9085	0.0012703	436.7667160035019	39.563	0.1694	39.563	39.425	39.594	0					6	4	2	0	0	0	0.024904	1	3409	3409		1.4188	0	1	48962	+		69498	31067	48704	48784	75663	75663					0.18765214158406707
RRRRTPRKPK	10	Unmodified	_RRRRTPRKPK_					0	0	0			REV__ENSG00000111961|ENST00000367467|SASH1	REV__ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7608947753906	3	450.96036	1349.85925	-0.28788	-0.00012982	-3.3903	-0.0015289	-3.6782	-0.0016587	451.29268747302075	38.866	0.36168	38.767	38.552	38.914	-0.098755					19	9	3	0	0	0	0.03519	1	3253	3253		3.4087	0	1	163600	+		69499	21959	48705	48785	75664	75664					0.19831678436162292
RRRRVPSR	8	Unmodified	_RRRRVPSR_					0	0	0			REV__nc|ENSG00000133226|Q8IYB3-2|SRRM1	REV__nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.8428344726562	2	541.841939	1081.66933	4.2823	0.0023203	-2.1804	-0.0011815	2.1019	0.0011389	541.8408574415744	17.81	0.48199	17.87	17.569	18.051	0.06036					24	11	3	0	0	0	1.0574	1	170	170		17.365	0	1	63187	+		69500	23362	48706	48786	75665	75665					0.1317581149378384
RRRRVRELRRR	11	Unmodified	_RRRRVRELRRR_					0	0	0			REV__ENSG00000090470|ENST00000204549|PDCD7	REV__ENSG00000090470|ENST00000204549|PDCD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3060913085938	3	537.012118	1608.01452	-0.87687	-0.00047089	-1.461	-0.00078457	-2.3379	-0.0012555	537.3445650976129	47.837	0.18927	47.837	47.717	47.906	0					8	5	2	0	0	0	0.024895	1	4837	4837		8.0344	6.6156	1	405960	+		69501	20875	48707	48787	75666	75666					0.23483722290416154
RRRSRGQRDS	10	Unmodified	_RRRSRGQRDS_					0	0	0		ENST00000490467.5_1_3:135684657-135745681:+|nuORF	ENST00000490467.5_1_3:135684657-135745681:+|nuORF	ENST00000490467.5_1_3:135684657-135745681:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	425.2383728027344	3	425.23633	1272.68716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.028	1	21.826	21.326	22.326	-0.20199								0	0	0	0.74733	1	715	715		41.427	8.6761	1				69502	15432	48708	48788	75667	75667					0.06172481957992204
RRRVSGEGI	9	Unmodified	_RRRVSGEGI_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-7|MADD	REV__nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2997436523438	2	515.299239	1028.58392	-0.78094	-0.00040242	1.8648	0.00096092	1.0838	0.0005585	515.3001078838886	62.425	0.55283	62.247	61.883	62.435	-0.17781					26	14	2	0	0	0	0.42604	1	7026	7026		64.207	2.0999	1	7810900	+		69503	21863	48709	48789	75668	75668					0.07077601517494259
RRRWASSCT	9	Unmodified	_RRRWASSCT_					0	0	0			REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF	REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2703247070312	2	561.782899	1121.55124	-0.6155	-0.00034578	3.96	0.0022247	3.3445	0.0018789	561.7861085325626	27.049	0.29708	26.807	26.614	26.911	-0.24217					8	6	2	0	0	0	0.02435	1	1470	1470		51.335	21.018	1	77181	+		69504	35824	48710	48790	75669	75669					-0.004669288770401181
RRSENEESL	9	Unmodified	_RRSENEESL_					0	0	0			REV__ENSG00000109705|ENST00000382438|NKX3-2	REV__ENSG00000109705|ENST00000382438|NKX3-2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.271728515625	2	560.273084	1118.53161	-0.41015	-0.00022979	-2.69	-0.0015072	-3.1002	-0.001737	560.2715595691317	93.276	3.4097	93.284	92.421	95.831	0.0077209					205	80	6	0	0	0	0.14024	1	11821	11821		101.6	5.7855	1	17679000	+		69505	21811	48711	48791	75670	75670					-0.022910264068059405
RRSEVRIYY	9	Unmodified	_RRSEVRIYY_					0	0	0		ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	621.3128051757812	2	621.341104	1240.66765	-0.35428	-0.00022013	-3.5522	-0.0022071	-3.9065	-0.0024272	621.3387960565316	66.54	0.14561	66.295	66.24	66.386	-0.24517					5	3	2	0	0	0	0.023842	1	7641	7641		60.972	7.6205	1	260590			69506	5221	48712	48792	75671	75671					0.05694712894546683
RRSGVLVW	8	Unmodified	_RRSGVLVW_					0	0	0			REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF	REV__ENST00000551706.1_1_12:58144639-58145133:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7906494140625	2	486.790518	971.566484	-0.75013	-0.00036516	0.54289	0.00026427	-0.20724	-0.00010088	486.79058737492784	37.602	1.1274	37.393	36.999	38.126	-0.2092					95	30	5	0	0	0	0.845	1	3029	3029		55.504	11.387	1	3324500	+		69507	34939	48713	48793	75672	75672					0.07956305982463618
RRSLTAEACD	10	Unmodified	_RRSLTAEACD_					0	0	0			REV__ENST00000278460.11_1_11:47183282-47183486:+|nuORF	REV__ENST00000278460.11_1_11:47183282-47183486:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2703857421875	2	561.272029	1120.52951	-0.77983	-0.00043769	-3.9576	-0.0022213	-4.7375	-0.002659	561.2702975131176	26.275	3.302	26.039	25.762	29.064	-0.23603					301	81	8	0	0	0	0.77808	9	1420	1314;1324;1360;1372;1409;1420;1432;1457;1470		62.107	10.66	1	235830000	+		69508	29864	48714	48794	75673;75674;75675;75676;75677;75678;75679;75680;75681	75678					-0.025937784162806565
RRSLTAEACD	10	Unmodified	_RRSLTAEACD_					0	0	0			REV__ENST00000278460.11_1_11:47183282-47183486:+|nuORF	REV__ENST00000278460.11_1_11:47183282-47183486:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2703857421875	2	561.272029	1120.52951	-1.2106	-0.00067947	-3.357	-0.0018842	-4.5676	-0.0025637	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	1.0002	2	1395	1359;1395		45.972	4.5456	1	242840000	+		69509	29864	48714	48794	75682;75683	75683					-0.025937784162806565
RRSPPQRR	8	Unmodified	_RRSPPQRR_					0	0	0		ENST00000573539.5_1_17:3442880-3458098:-|nuORF	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8143310546875	2	526.812848	1051.61114	1.9017	0.0010018	0.11614	6.1184E-05	2.0178	0.001063	526.812894389391	18.358	0.39254	18.358	18.136	18.529	0					18	7	4	0	0	0	1.0574	1	290	290		24.203	0	1	237850			69510	17073	48715	48795	75684	75684					0.08740129848501965
RRSQLELP	8	Unmodified	_RRSQLELP_					0	0	0		ENST00000466409.1_1_9:95873162-95873573:+|nuORF	ENST00000466409.1_1_9:95873162-95873573:+|nuORF	ENST00000466409.1_1_9:95873162-95873573:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.8039855957031	2	499.790715	997.566878	-0.46347	-0.00023164	4.2179	0.0021081	3.7544	0.0018764	499.7926861340141	53.429	0.44459	53.232	53.011	53.456	-0.19739					19	11	2	0	0	0	0.027866	1	5565	5565		45.952	15.448	1	592870			69511	14811	48716	48796	75685	75685					0.06799680911649375
RRSRHIVLCV	10	Unmodified	_RRSRHIVLCV_					0	0	0			REV__ENSG00000183150|ENST00000651487|GPR19	REV__ENSG00000183150|ENST00000651487|GPR19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8695068359375	2	619.866766	1237.71898	-0.13269	-8.2249E-05	4.4432	0.0027542	4.3105	0.002672	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0142	1	11542	11542		44.117	11.304	1	4730400	+		69512	27545	48717	48797	75686	75686					0.10962758387586291
RRSRLAVHLE	10	Unmodified	_RRSRLAVHLE_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2663879394531	3	412.914305	1235.72109	1.1297	0.00046649	-1.0051	-0.00041504	0.1246	5.145E-05	412.9138003925939	17.86	0.29951	17.706	17.507	17.807	-0.15403					7	5	2	0	0	0	1.1103	1	224	224		16.007	1.1419	1	21470	+		69513	23528	48718	48798	75687	75687					0.1126551039703827
RRSRLAVHLE	10	Unmodified	_RRSRLAVHLE_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	412.914305	1235.72109	1.1297	0.00046649	-1.0051	-0.00041504	0.1246	5.145E-05	412.9138003925939	17.86	0.29951	17.706	17.507	17.807	-0.15403	0.0174	-0.00086028	NaN	16.007	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21470	+		69514	23528	48718	48798							0.1126551039703827
RRSRLAVHLE	10	Unmodified	_RRSRLAVHLE_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	412.914305	1235.72109	-0.10846	-4.4785E-05	0.65419	0.00027012	0.54573	0.00022534	412.9145141040237	17.878	0.34831	17.671	17.514	17.863	-0.20669	-0.0174	0.0011952	NaN	16.007	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24660	+		69515	23528	48718	48798							0.1126551039703827
RRSRRGSV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))RRSRRGSV_					1	0	0			REV__ENST00000552283.5_1_12:102505993-102512153:-|nuORF	REV__ENST00000552283.5_1_12:102505993-102512153:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2961730957031	2	508.29703	1014.57951	-0.55202	-0.00028059	-3.6559	-0.0018583	-4.2079	-0.0021389	508.295156863036	59.729	0.97321	59.815	59.351	60.325	0.085682					60	25	3	0	0	0	0.71063	1	6773	6773		66.429	9.7082	1	3458900	+		69516	34948	48719	48799	75688	75688					0.07280137094574002
RRSRSISL	8	Unmodified	_RRSRSISL_					0	0	0		ENST00000425941.6_1_2:38972277-38976074:-|nuORF;ENST00000425778.5_1_2:38972277-38976074:-|nuORF;ENST00000487773.1_1_2:38972277-38975875:-|nuORF;ENST00000431066.5_1_2:38972277-38975875:-|nuORF;ENST00000443213.5_1_2:38972277-38975875:-|nuORF;nc|ENSG00000115875|Q16629-4|SRSF7;ENSG00000115875|ENST00000313117|SRSF7	ENST00000425941.6_1_2:38972277-38976074:-|nuORF	ENST00000425941.6_1_2:38972277-38976074:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2584533691406	2	487.796332	973.578111	-0.70291	-0.00034288	0.96183	0.00046918	0.25891	0.0001263	487.79770102003204	51.674	0.20578	51.527	51.371	51.577	-0.14735					7	5	2	0	0	0	0.027866	1	5450	5450		31.955	0	1	76947			69517	3497	48720	48800	75689	75689					0.09026503005816267
RRSSSRRL	8	Unmodified	_RRSSSRRL_					0	0	0			REV__ENSG00000115165|ENST00000264192|CYTIP	REV__ENSG00000115165|ENST00000264192|CYTIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.3055114746094	2	509.304855	1016.59516	-0.65386	-0.00033301	2.7455	0.0013983	2.0917	0.0010653	509.30611579476954	22.204	0.74357	22.019	21.764	22.507	-0.18539					21	8	3	0	0	0	0.89627	1	766	766		51.335	1.8939	1	444550	+		69518	22172	48721	48801	75690	75690					0.08752423611610993
RRSTCPSLLL	10	Unmodified	_RRSTCPSLLL_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.3258056640625	2	573.326608	1144.63866	-0.18255	-0.00010466	-1.5127	-0.00086729	-1.6953	-0.00097196	573.3255985273842	72.924	0.87424	72.659	72.343	73.217	-0.26479					47	20	4	0	0	0	0.79525	1	8559	8559		60.972	6.1956	1	1230800	+		69519	23654	48722	48802	75691	75691					0.0721285227386943
RRSTDYPTK	9	Unmodified	_RRSTDYPTK_					0	0	0			REV__ENSG00000206181|ENST00000332567|ELOA2	REV__ENSG00000206181|ENST00000332567|ELOA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.2963256835938	2	562.296362	1122.57817	0.25959	0.00014597	-0.52035	-0.00029259	-0.26076	-0.00014662	562.2959376859831	21.47	0.76542	21.292	21.016	21.781	-0.17721					37	15	4	0	0	0	0.80003	1	686	686		39.253	1.4413	1	325050	+		69520	28703	48723	48803	75692	75692					0.02178458215144019
RRSTRQKTT	9	Unmodified	_RRSTRQKTT_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3292846679688	2	567.328528	1132.6425	-0.38591	-0.00021894	2.6444	0.0015003	2.2585	0.0012813	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	0.77768	2	11271	11271;11295		40.778	8.6415	1	4298500			69521	6362	48724	48804	75693;75694	75693					0.08148658091931793
RRSTRQKTT	9	Unmodified	_RRSTRQKTT_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3292846679688	2	567.328528	1132.6425	0.34076	0.00019332	1.8889	0.0010716	2.2297	0.001265	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	0.97455	1	11226	11226		25.574	1.0549	1	4116000			69522	6362	48724	48804	75695	75695					0.08148658091931793
RRTAQEPRRIA	11	Unmodified	_RRTAQEPRRIA_					0	0	0		ENST00000597578.1_1_16:86524111-86542471:-|nuORF;ENST00000599749.5_1_16:86524596-86542567:-|nuORF	ENST00000597578.1_1_16:86524111-86542471:-|nuORF	ENST00000597578.1_1_16:86524111-86542471:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.93292236328125	3	451.932248	1352.77491	-0.033263	-1.5033E-05	0.89189	0.00040308	0.85863	0.00038804	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0739	1	12304	12304		18.531	2.5243	1	1141700			69523	17452	48725	48805	75696	75696					0.11263682828757737
RRTASTPLL	9	Unmodified	_RRTASTPLL_					0	0	0			REV__ENST00000564421.1_1_16:89662218-89663026:+|nuORF	REV__ENST00000564421.1_1_16:89662218-89663026:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.806640625	2	507.806365	1013.59818	0.53261	0.00027047	-0.52531	-0.00026675	0.0073063	3.7102E-06	507.80588260441334	20.707	0.54245	20.512	20.286	20.828	-0.19577					27	10	3	0	0	0	0.29158	1	576	576		76.774	17.992	1	321040	+		69524	35246	48726	48806	75697	75697					0.09192253945775519
RRTCSKLI	8	Unmodified	_RRTCSKLI_					0	0	0			REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	REV__ARHGAP26|p.K612Nfs*34|1|0.17|ENSG00000145819|chr5:143134102-143134102|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7899475097656	2	488.789661	975.564769	0.25747	0.00012585	-0.72417	-0.00035397	-0.4667	-0.00022812	488.78909494230425	100.47	0.45961	100.34	100.1	100.56	-0.13364					18	12	3	0	0	0	0.845	1	12467	12467		55.504	2.1528	1	211200	+		69525	19159	48727	48807	75698	75698					0.07600928902218129
RRTERSLLF	9	Unmodified	_RRTERSLLF_					0	0	0			REV__ENST00000427259.1_1_9:98632604-98637316:-|nuORF	REV__ENST00000427259.1_1_9:98632604-98637316:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.343646	1176.67274	-0.20383	-0.00012013	-0.84329	-0.00049699	-1.0471	-0.00061711	589.3430115300414	103.72	0.59683	103.6	103.36	103.96	-0.12724					38	13	4	0	0	0	0.96322	1	12905	12905		27.882	1.1893	1	525960	+		69526	32290	48728	48808	75699	75699					0.09147016757128767
RRTETVQKL	9	Unmodified	_RRTETVQKL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.8356323242188	2	565.835654	1129.65676	0.39662	0.00022442	-0.85419	-0.00048333	-0.45757	-0.00025891	565.8351814446705	21.761	0.95173	21.584	21.162	22.113	-0.17721					54	19	5	0	0	0	0.57016	1	712	712		54.722	4.6978	1	1719400			69527	10520	48729	48809	75700	75700					0.0971131052021974
RRTETVQKL	9	Unmodified	_RRTETVQKL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.835693359375	2	565.835654	1129.65676	-0.75944	-0.00042972	0.2639	0.00014932	-0.49554	-0.0002804	565.8358382043282	21.889	0.86915	21.687	21.276	22.145	-0.20218					49	17	5	0	0	0	0.72494	1	699	699		44.377	0	1	1710200			69528	10520	48729	48809	75701	75701					0.0971131052021974
RRTETVQKL	9	Unmodified	_RRTETVQKL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	565.835654	1129.65676	-0.62303	-0.00035253	0.3163	0.00017898	-0.30673	-0.00017356	565.8357018663767	21.674	0.76295	21.584	21.304	22.067	-0.090094	-0.066521	0.00036124	NaN	54.722	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559400			69529	10520	48729	48809							0.0971131052021974
RRTHNLQIL	9	Unmodified	_RRTHNLQIL_					0	0	0			REV__ENSG00000180447|ENST00000298743|GAS1	REV__ENSG00000180447|ENST00000298743|GAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8425903320312	2	575.843813	1149.67307	-1.2575	-0.00072414	-0.21498	-0.00012379	-1.4725	-0.00084794	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	0.89441	1	11326	11326		32.812	2.3088	1	6251500	+		69530	27343	48730	48810	75702	75702					0.10422436476983421
RRTIREIR	8	Unmodified	_RRTIREIR_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3446044921875	2	550.343981	1098.67341	0.013267	7.3017E-06	0.032225	1.7735E-05	0.045493	2.5037E-05	550.3438288788167	17.393	0.23371	17.251	17.134	17.368	-0.14278					10	4	3	0	0	0	1.0516	1	150	150		29.15	3.5755	1	77930	+		69531	21551	48731	48811	75703	75703					0.128018561968247
RRTIVATGG	9	Unmodified	_RRTIVATGG_					0	0	0			REV__ENST00000422154.6_1_X:102940158-102941669:-|nuORF	REV__ENST00000422154.6_1_X:102940158-102941669:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7774353027344	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.92825	1	9892	9892		30.504	1.3541	1	1283800	+		69532	32198	48732	48812	75704	75704					0.07307411740191583
RRTLMLMA	8	Unmodified	_RRTLMLMA_					0	0	0		ENSG00000228083|ENST00000380222|IFNA14	ENSG00000228083|ENST00000380222|IFNA14	ENSG00000228083|ENST00000380222|IFNA14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2812194824219	2	496.280615	990.546676	3.0379	0.0015076	-2.6911	-0.0013355	0.34677	0.0001721	496.2791355047135	18.309	0.34403	18.309	18.136	18.48	0					15	6	3	0	0	0	1.0572	1	279	279		28.254	0	1	109200			69533	10674	48733	48813	75705	75705					0.051024706558450816
RRTLQTLEIQL	11	Unmodified	_RRTLQTLEIQL_					0	0	0		ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7	ENSG00000173908|ENST00000306658|KRT28	ENSG00000173908|ENST00000306658|KRT28	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.60845947265625	3	457.608659	1369.80415	0.98273	0.00044971	-2.4741	-0.0011321	-1.4913	-0.00068244	457.6076861640624	98.645	1.9478	98.521	97.849	99.796	-0.12413					135	49	3	0	0	0	1.0563	1	12246	12246		23.378	8.0404	1	291450		+	69534	564	48734	48814	75706	75706					0.13403782334376046
RRTNRAVL	8	Unmodified	_RRTNRAVL_					0	0	0			REV__ENST00000453904.2_1_2:211035059-211035299:-|nuORF	REV__ENST00000453904.2_1_2:211035059-211035299:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3061218261719	2	493.304324	984.594095	0.2699	0.00013314	1.9778	0.00097564	2.2477	0.0011088	493.30526676310683	59.031	0.87862	59.116	58.813	59.692	0.085686					71	23	4	0	0	0	1.0009	1	6672	6672		37.159	6.8414	1	8727300	+		69535	32754	48735	48815	75707	75707					0.10118209242705234
RRTPIALHL	9	Unmodified	_RRTPIALHL_					0	0	0			REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	REV__nc|ENSG00000107937|Q9BZE4-3|GTPBP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8372802734375	2	538.838	1075.66145	2.0153	0.0010859	-2.1092	-0.0011365	-0.09393	-5.0613E-05	538.836644266127	18.407	0.48871	18.407	18.186	18.674	0					18	9	3	0	0	0	0.90698	1	289	289		31.955	1.4512	1	138020	+		69536	21698	48736	48816	75708	75708					0.12664239453647497
RRTQEALGKV	10	Unmodified	_RRTQEALGKV_					0	0	0		nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;ENSG00000204104|ENST00000373327|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.3385009765625	2	579.341104	1156.66765	0.27556	0.00015964	-2.8985	-0.0016792	-2.623	-0.0015196	579.3394524079755	102.86	0.61132	102.73	102.49	103.1	-0.12931					25	14	3	0	0	0	1.1333	1	12774	12774		28.081	1.3886	1	484330			69537	10300	48737	48817	75709	75709					0.09558712894499877
RRTQEALGKV	10	Unmodified	_RRTQEALGKV_					0	0	0		nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;ENSG00000204104|ENST00000373327|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	579.341104	1156.66765	-1.5353	-0.00088945	-1.5236	-0.0008827	-3.0589	-0.0017722	579.339952243932	102.76	0.30992	102.76	102.57	102.88	0	0.0095747	0.0013174	NaN	28.081	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88744			69538	10300	48737	48817							0.09558712894499877
RRTQEALGKV	10	Unmodified	_RRTQEALGKV_					0	0	0		nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;ENSG00000204104|ENST00000373327|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	579.341104	1156.66765	-0.48092	-0.00027862	-3.0065	-0.0017418	-3.4874	-0.0020204	579.3388383150266	102.7	0.30707	102.71	102.54	102.85	0.0054169	-0.037472	-0.00040074	NaN	28.081	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132020			69539	10300	48737	48817							0.09558712894499877
RRTQEALGKV	10	Unmodified	_RRTQEALGKV_					0	0	0		nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;ENSG00000204104|ENST00000373327|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	579.341104	1156.66765	-0.67111	-0.0003888	-2.7195	-0.0015755	-3.3906	-0.0019643	579.3394615041551	102.87	0.32978	102.75	102.54	102.87	-0.12783	-0.0014894	-6.8223E-05	NaN	28.081	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	661540			69540	10300	48737	48817							0.09558712894499877
RRTQEALGKV	10	Unmodified	_RRTQEALGKV_					0	0	0		nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1;ENSG00000204104|ENST00000373327|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	579.341104	1156.66765	-0.14305	-8.2875E-05	-2.7359	-0.001585	-2.8789	-0.0016679	579.3395258627004	102.97	0.36102	102.8	102.59	102.95	-0.17034	0.048366	-8.716E-05	NaN	28.081	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286520			69541	10300	48737	48817							0.09558712894499877
RRTRILPLGE	10	Unmodified	_RRTRILPLGE_					0	0	0			REV__CON__Q28107	REV__CON__Q28107	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.8720092773438	2	605.872571	1209.73059	0.74452	0.00045108	-1.4277	-0.00086503	-0.68322	-0.00041395	605.8715382843117	98.689	1.2064	98.565	98.197	99.403	-0.12413					88	29	5	0	0	0	1.1286	1	12222	12222		25.574	2.5316	1	1081300	+	+	69542	19571	48738	48818	75710	75710					0.13411278682565353
RRTRRHRTIFS	11	Unmodified	_RRTRRHRTIFS_					0	0	0		ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.9586486816406	3	495.958908	1484.85489	0.1597	7.9203E-05	0.18135	8.9944E-05	0.34105	0.00016915	495.95869291912163	102.24	1.8619	102.11	101.46	103.32	-0.12931					117	44	4	0	0	0	1.1045	1	12692	12692		10.104	0.45776	1	658600			69543	1261	48739	48819	75711	75711					0.13186169222581157
RRTVGDPY	8	Unmodified	_RRTVGDPY_					0	0	0			REV__ENST00000534674.5_1_11:58672917-58711035:+|nuORF	REV__ENST00000534674.5_1_11:58672917-58711035:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.2543640136719	2	482.253966	962.493378	0.079311	3.8248E-05	1.0898	0.00052556	1.1691	0.00056381	482.2544303545986	30.798	1.2356	30.646	30.298	31.534	-0.15231					58	30	2	0	0	0	0.95417	1	1977	1977		44.531	0.41427	1	2628500	+		69544	34647	48740	48820	75712	75712					0.010631324691757982
RRTVRRNRHF	10	Unmodified	_RRTVRRNRHF_					0	0	0			REV__ENSG00000162490|ENST00000294485|DRAXIN	REV__ENSG00000162490|ENST00000294485|DRAXIN	MSMS	OPSCC_39_ClassI_Rep-1	1	466.6075744628906	3	466.608098	1396.80247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.704	1	99.704	99.204	100.2	0								0	0	0	0.77073	1	12748	12748		19.263	0.73163	1		+		69545	25447	48741	48821	75713	75713					0.11993630879624106
RRTYPFKP	8	Unmodified	_RRTYPFKP_					0	0	0			REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF	REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2464599609375	2	532.803626	1063.5927	-0.84534	-0.0004504	-1.0396	-0.0005539	-1.8849	-0.0010043	532.8031429381095	48.267	0.6178	48.17	47.966	48.584	-0.097549					39	16	4	0	0	0	0.027866	1	4834	4834		24.203	4.206	1	1059300	+		69546	23053	48742	48822	75714	75714					0.06344575153957521
RRVALHLRLL	10	Unmodified	_RRVALHLRLL_					0	0	0		ENST00000258111.4_1_12:70760360-70760789:+|nuORF	ENST00000258111.4_1_12:70760360-70760789:+|nuORF	ENST00000258111.4_1_12:70760360-70760789:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	623.91552734375	2	623.914573	1245.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.5	1	107.34	106.84	107.84	-0.15772								0	0	0	0.77833	1	13344	13344		10.265	0.5596	1				69547	11413	48743	48823	75715	75715					0.2015185457012194
RRVKAEWP	8	Unmodified	_RRVKAEWP_					0	0	0			REV__AluJb_dup76429|chr11:12977957-12978245:-|1.1020310316415158|0.0916031255540202|3.59|509.0|9|3|sense	REV__AluJb_dup76429|chr11:12977957-12978245:-|1.1020310316415158|0.0916031255540202|3.59|509.0|9|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.255615234375	2	521.30125	1040.58795	-0.2838	-0.00014795	-1.6134	-0.00084106	-1.8972	-0.000989	521.3003263424612	45.324	0.69559	45.113	44.754	45.449	-0.21109					40	19	3	0	0	0	0.027866	1	4296	4296		45.952	27.628	1	3044600	+		69548	19113	48744	48824	75716	75716					0.06927691011196657
RRVLDGHLQL	10	Unmodified	_RRVLDGHLQL_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;REV__PHLPP2|p.A487Cfs*33|1|0.22|ENSG00000040199|chr16:71676459-71676460|-/A|frameshift_variant	REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	MSMS	OPSCC_39_ClassI_Rep-3	3	603.857421875	2	603.856921	1205.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.096	1	99.092	98.592	99.592	-0.0038834								0	0	0	0.77479	1	12589	12589		56.434	3.3448	1		+		69549	20087;37370	48745	48825	75717	75717					0.10466705648468633
RRVLRTHRSV	10	Unmodified	_RRVLRTHRSV_					0	0	0		ENST00000565131.5_1_15:76196304-76197948:+|nuORF;nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	ENST00000565131.5_1_15:76196304-76197948:+|nuORF	ENST00000565131.5_1_15:76196304-76197948:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.2644958496094	3	427.26545	1278.77452	0.1987	8.4896E-05	-2.6399	-0.0011279	-2.4412	-0.001043	427.26444300600974	54.063	2.6284	53.818	53.421	56.049	-0.2453					263	76	6	0	0	0	1.1228	1	5730	5730		22.58	1.5474	1	50149000			69550	7657	48746	48826	75718	75718					0.14628307899556603
RRVLRTHRSV	10	Unmodified	_RRVLRTHRSV_					0	0	0		ENST00000565131.5_1_15:76196304-76197948:+|nuORF;nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	ENST00000565131.5_1_15:76196304-76197948:+|nuORF	ENST00000565131.5_1_15:76196304-76197948:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.26446533203125	3	427.26545	1278.77452	0.33845	0.00014461	-2.8117	-0.0012013	-2.4732	-0.0010567	427.2643585414106	53.977	2.4471	53.78	53.422	55.869	-0.19739					232	69	6	0	0	0	1.1165	2	5728	5704;5728		20.837	1.0006	1	46473000			69551	7657	48746	48826	75719;75720	75720					0.14628307899556603
RRVMGKEI	8	Unmodified	_RRVMGKEI_					0	0	0		nc|ENSG00000275743|A0A5B0|TRBV14	nc|ENSG00000275743|A0A5B0|TRBV14	nc|ENSG00000275743|A0A5B0|TRBV14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.77081298828125	2	494.789661	987.564769	-0.93795	-0.00046409	-0.071093	-3.5176E-05	-1.009	-0.00049926	494.78935589846037	22.474	0.3805	22.548	22.365	22.745	0.073954					11	7	2	0	0	0	0.027866	1	752	752		30.504	11.144	1	38918			69552	18796	48747	48827	75721	75721					0.07048928902213447
RRVMGKEI	8	Unmodified	_RRVMGKEI_					0	0	0		nc|ENSG00000275743|A0A5B0|TRBV14	nc|ENSG00000275743|A0A5B0|TRBV14	nc|ENSG00000275743|A0A5B0|TRBV14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.789661	987.564769	-0.057656	-2.8527E-05	-0.061108	-3.0235E-05	-0.11876	-5.8763E-05	494.7893965731006	22.578	0.28048	22.578	22.385	22.665	0	0.015202	4.9058E-06	NaN	30.504	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32142			69553	18796	48747	48827							0.07048928902213447
RRVNPPTL	8	Unmodified	_RRVNPPTL_					0	0	0		nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-2|INF2	nc|ENSG00000203485|Q27J81-2|INF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7924499511719	2	476.787976	951.561398	0.34794	0.00016589	0.37129	0.00017703	0.71923	0.00034292	476.78812684314437	50.531	0.46837	50.382	50.289	50.758	-0.14916					20	13	2	0	0	0	0.027866	1	5259	5259		26.796	4.8362	1	930370			69554	10270	48748	48828	75722	75722					0.08368002119857465
RRVRRQLAGLV	11	Unmodified	_RRVRRQLAGLV_					0	0	0			REV__ENST00000522483.2_1_19:36526344-36545129:-|nuORF	REV__ENST00000522483.2_1_19:36526344-36545129:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.61834716796875	3	441.952983	1322.83712	1.3142	0.00058081	1.2195	0.00053896	2.5337	0.0011198	441.9531388168807	16.935	0.3015	16.781	16.656	16.957	-0.15376					6	5	2	0	0	0	0.024821	1	136	136		25.126	7.2928	1	10243	+		69555	25380	48749	48829	75723	75723					0.18861453967747366
RRVRRQLAGLV	11	Unmodified	_RRVRRQLAGLV_					0	0	0			REV__ENST00000522483.2_1_19:36526344-36545129:-|nuORF	REV__ENST00000522483.2_1_19:36526344-36545129:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	441.952983	1322.83712	-0.26745	-0.0001182	1.8335	0.00081032	1.5661	0.00069212	441.9536752514286	16.881	0.19227	16.673	16.569	16.762	-0.20777	-0.053934	0.0001947	NaN	19.263	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10152	+		69556	25380	48749	48829							0.18861453967747366
RRVSPSPP	8	Unmodified	_RRVSPSPP_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;ZNF318|p.N1756Rfs*4|1|0.22|ENSG00000171467|chr6:43338714-43338733|GGCTTTCCTTATCCTGGTTA/-|frameshift_variant;nc|ENSG00000171467|Q5VUA4-2|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2586364746094	2	448.259051	894.503549	0.60857	0.0002728	-0.43339	-0.00019427	0.17518	7.8527E-05	448.25878391946196	86.571	0.98483	86.429	86.103	87.088	-0.14217					42	22	3	0	0	0	1.0574	1	10522	10522		24.203	0	1	555460			69557	8154	48750	48830	75724	75724					0.05207740194430244
RRVVGQGKGRR	11	Unmodified	_RRVVGQGKGRR_					0	0	0		ENST00000370520.3_1_20:61273322-61274596:-|nuORF	ENST00000370520.3_1_20:61273322-61274596:-|nuORF	ENST00000370520.3_1_20:61273322-61274596:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.5976257324219	3	423.597199	1267.76977	-0.0915	-3.8759E-05	1.2168	0.00051545	1.1253	0.00047669	423.59765141648836	104.3	0.77709	104.3	103.98	104.76	0.0031357					56	20	4	0	0	0	1.0718	1	13356	13356		22.562	6.5548	1	959290			69558	12963	48751	48831	75725	75725					0.14659423756802425
RRVVGQGKGRR	11	Unmodified	_RRVVGQGKGRR_					0	0	0		ENST00000370520.3_1_20:61273322-61274596:-|nuORF	ENST00000370520.3_1_20:61273322-61274596:-|nuORF	ENST00000370520.3_1_20:61273322-61274596:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.59735107421875	3	423.597199	1267.76977	0.70864	0.00030018	0.38958	0.00016502	1.0982	0.0004652	423.5972966435126	104.55	0.69975	104.38	104.05	104.75	-0.16791					46	19	4	0	0	0	1.0748	1	12998	12998		21.78	5.8598	1	367880			69559	12963	48751	48831	75726	75726					0.14659423756802425
RRWKSELF	8	Unmodified	_RRWKSELF_					0	0	0		ENST00000573267.1_3_16:74729599-74734630:-|nuORF;ENST00000575686.1_1_16:74729594-74734685:-|nuORF	ENST00000573267.1_3_16:74729599-74734630:-|nuORF	ENST00000573267.1_3_16:74729599-74734630:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3238525390625	2	561.314358	1120.61416	0.38113	0.00021394	-2.2647	-0.0012712	-1.8836	-0.0010573	561.3129402305344	68.422	0.76281	68.179	67.667	68.43	-0.24277					38	18	3	0	0	0	0.027866	1	7864	7864		57.811	6.4758	1	321270			69560	17069	48752	48832	75727	75727					0.058679601826497674
RRWPGSAAALW	11	Unmodified	_RRWPGSAAALW_					0	0	0		ENST00000561518.5_2_16:2314707-2317957:-|nuORF	ENST00000561518.5_2_16:2314707-2317957:-|nuORF	ENST00000561518.5_2_16:2314707-2317957:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.89776611328125	3	424.231634	1269.67307	5.3597	0.0022737	-3.6632	-0.001554	1.6964	0.00071969	424.5645227446612	17.2	0.24135	16.949	16.835	17.076	-0.25049					7	4	2	0	0	0	0.024845	1	132	132		14.694	9.1358	1	24187			69561	16827	48753	48833	75728	75728					0.04902436476982075
RRWPGSAAALW	11	Unmodified	_RRWPGSAAALW_					0	0	0		ENST00000561518.5_2_16:2314707-2317957:-|nuORF	ENST00000561518.5_2_16:2314707-2317957:-|nuORF	ENST00000561518.5_2_16:2314707-2317957:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	424.231634	1269.67307	1.6224	0.00068826	0.81617	0.00034625	2.4386	0.0010345	424.23190515655426	17.186	0.25249	17.032	16.907	17.159	-0.15403	0.041109	0.0043794	NaN	14.694	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23743			69562	16827	48753	48833							0.04902436476982075
RRWQHRYWREV	11	Unmodified	_RRWQHRYWREV_					0	0	0		ENST00000561903.6_1_16:1826945-1828699:+|nuORF;ENST00000570069.5_1_16:1826945-1827407:+|nuORF	ENST00000561903.6_1_16:1826945-1828699:+|nuORF	ENST00000561903.6_1_16:1826945-1828699:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.3355712890625	3	557.96243	1670.86546	0.61589	0.00034364	-2.0186	-0.0011263	-1.4027	-0.00078264	558.2968467798444	19.179	0.64421	18.979	18.761	19.405	-0.20034					25	12	3	0	0	0	0.024882	1	424	424		12.433	6.4318	1	38951			69563	16837	48754	48834	75729	75729					0.0568615187701198
RRWRRRRRRRR	11	Unmodified	_RRWRRRRRRRR_					0	0	0			REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF	REV__ENST00000556735.1_1_14:51134724-51134856:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2662353515625	4	442.282523	1765.10099	-0.039564	-1.7499E-05	-3.0232	-0.0013371	-3.0628	-0.0013546	442.28171278291694	26.51	0.41661	26.51	26.283	26.7	0					13	9	2	0	0	0	0.024904	1	1340	1340		1.3219	0	1	64674	+		69564	34099	48755	48835	75730	75730					0.24904146635617508
RRWTQRRRRNS	11	Unmodified	_RRWTQRRRRNS_					0	0	0		ENST00000233468.4_1_2:24290678-24291201:-|nuORF	ENST00000233468.4_1_2:24290678-24291201:-|nuORF	ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2485961914062	3	524.633195	1570.87776	-0.86191	-0.00045219	1.3889	0.00072866	0.52698	0.00027647	524.6339349831828	26.807	0.33424	26.569	26.414	26.748	-0.23819					15	7	3	0	0	0	0.024894	1	1440	1440		8.4073	4.9985	1	113190			69565	11243	48756	48836	75731	75731					0.11515188340058558
RRYAQKIQA	9	Unmodified	_RRYAQKIQA_					0	0	0			REV__ENST00000535730.1_1_11:73662114-73670750:+|nuORF	REV__ENST00000535730.1_1_11:73662114-73670750:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8309326171875	2	567.330539	1132.64652	-0.39327	-0.00022312	-1.1254	-0.00063845	-1.5186	-0.00086157	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	0.75397	1	11039	11039		42.396	5.9494	1	19210000	+		69566	27962	48757	48837	75732	75732					0.0855074758567298
RRYAQKIQA	9	Unmodified	_RRYAQKIQA_					0	0	0			REV__ENST00000535730.1_1_11:73662114-73670750:+|nuORF	REV__ENST00000535730.1_1_11:73662114-73670750:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.83056640625	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.85329	1	11030	11030		35.618	5.3006	1	18337000	+		69567	27962	48757	48837	75733	75733					0.0855074758567298
RRYVQLVE	8	Unmodified	_RRYVQLVE_					0	0	0			REV__nc|ENSG00000167604|Q8NI38|NFKBID	REV__nc|ENSG00000167604|Q8NI38|NFKBID	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2672729492188	2	531.806365	1061.59818	-0.17292	-9.1962E-05	-1.4173	-0.00075374	-1.5902	-0.0008457	531.8053952897494	20.229	0.6272	20.062	19.767	20.395	-0.16774					20	12	2	0	0	0	0.027866	1	559	559		23.042	0	1	33497	+		69568	26161	48758	48838	75734	75734					0.06984253945756791
RSAAAEPREA	10	Unmodified	_RSAAAEPREA_					0	0	0		ENST00000324856.11_1_1:27022718-27022967:+|nuORF	ENST00000324856.11_1_1:27022718-27022967:+|nuORF	ENST00000324856.11_1_1:27022718-27022967:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.7876586914062	2	529.272887	1056.53122	-0.69004	-0.00036522	-2.8704	-0.0015192	-3.5604	-0.0018844	529.2709420696009	51.893	0.62815	51.985	51.857	52.486	0.091938					19	15	2	0	0	0	0.03519	1	5528	5528		30.569	1.3988	1	121490			69569	12262	48759	48839	75735	75735					0.0052159866399961174
RSAAPKLVV	9	Unmodified	_RSAAPKLVV_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7821044921875	2	470.800552	939.58655	0.12203	5.7454E-05	-1.195	-0.00056259	-1.0729	-0.00050513	470.7997868818204	29.205	0.35897	29.283	29.091	29.45	0.078346					13	8	2	0	0	0	0.024427	1	1722	1722		34.173	3.6689	1	83616	+		69570	20688	48760	48840	75736	75736					0.11434056922405489
RSAATSPQTL	10	Unmodified	_RSAATSPQTL_					0	0	0			REV__ENST00000453270.2_1_15:96877781-96877817:+|nuORF	REV__ENST00000453270.2_1_15:96877781-96877817:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.293701171875	2	516.277638	1030.54072	-0.59181	-0.00030554	3.134	0.001618	2.5422	0.0013125	516.2789827475483	40.038	0.48949	39.925	39.754	40.243	-0.11222					31	12	3	0	0	0	0.03519	1	3491	3491		53.089	3.6474	1	1476100	+		69571	32747	48761	48841	75737	75737					0.026673669495039576
RSAATSPQTL	10	Unmodified	_RSAATSPQTL_					0	0	0			REV__ENST00000453270.2_1_15:96877781-96877817:+|nuORF	REV__ENST00000453270.2_1_15:96877781-96877817:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2924194335938	2	516.277638	1030.54072	-1.2592	-0.00065011	4.0811	0.002107	2.8219	0.0014569	516.2795951641525	40.199	1.0977	40.222	40.013	41.111	0.023006					49	30	3	0	0	0	0.03519	1	3479	3479		45.022	4.244	1	1442700	+		69572	32747	48761	48841	75738	75738					0.026673669495039576
RSAATVAAW	9	Unmodified	_RSAATVAAW_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2534484863281	2	466.751059	931.487565	-0.094207	-4.3971E-05	-1.2796	-0.00059727	-1.3738	-0.00064125	466.75034921465004	40.553	0.46918	40.328	40.114	40.583	-0.225					26	12	3	0	0	0	0.024323	1	3475	3475		27.882	0	1	501040			69573	2270	48762	48842	75739	75739					0.019080339574998106
RSACRQAAMS	10	Carbamidomethyl (C)	_RSAC(Carbamidomethyl (C))RQAAMS_	RSAC(1)RQAAMS		RSAC(64)RQAAMS		0	1	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2671508789062	2	569.266224	1136.5179	0.31757	0.00018078	2.0104	0.0011445	2.328	0.0013253	569.2673127638058	23.413	2.6043	23.212	21.231	23.835	-0.20193					194	56	4	0	0	0	0.75651	2	817	817;863		63.534	10.597	1	2615500	+		69574	26507	48763	48843	75740;75741	75740	350				-0.04490298711266405
RSACRQAAMS	10	Carbamidomethyl (C)	_RSAC(Carbamidomethyl (C))RQAAMS_	RSAC(1)RQAAMS		RSAC(67)RQAAMS		0	1	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2676391601562	2	569.266224	1136.5179	-0.21662	-0.00012331	2.6029	0.0014818	2.3863	0.0013585	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	0.69662	1	917	917		67.494	7.5629	1	3402100	+		69575	26507	48763	48843	75742	75742	350				-0.04490298711266405
RSACRQAAMS	10	Carbamidomethyl (C)	_RSAC(Carbamidomethyl (C))RQAAMS_	RSAC(1)RQAAMS		RSAC(64)RQAAMS		0	1	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2677001953125	2	569.266224	1136.5179	-0.033071	-1.8826E-05	2.7061	0.0015405	2.6731	0.0015217	569.2676691973824	24.287	1.2505	24.113	23.743	24.993	-0.17484					80	27	5	0	0	0	0.75651	1	1017	1017		63.534	7.1001	1	2920100	+		69576	26507	48763	48843	75743	75743	350				-0.04490298711266405
RSACRQAAMS	10	Carbamidomethyl (C)	_RSAC(Carbamidomethyl (C))RQAAMS_	RSAC(1)RQAAMS		RSAC(55)RQAAMS		0	1	0			REV__nc|ENSG00000170802|P32314-2|FOXN2	REV__nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2677612304688	2	569.266224	1136.5179	1.542	0.0008778	0.82887	0.00047185	2.3709	0.0013497	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.88978	1	912	912		54.722	10.345	1	2894000	+		69577	26507	48763	48843	75744	75744	350				-0.04490298711266405
RSACWDWQS	9	Unmodified	_RSACWDWQS_					0	0	0			REV__ENST00000409020.5_1_2:201768463-201768559:+|nuORF	REV__ENST00000409020.5_1_2:201768463-201768559:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.7820434570312	2	569.740365	1137.46618	-1.3295	-0.00075746	2.8725	0.0016366	1.543	0.00087912	570.2438500807549	25.003	0.67742	25.003	24.608	25.285	0					25	15	3	0	0	0	0.023093	1	1111	1111		72.879	33.626	1	104540	+		69578	31943	48764	48844	75745	75745					-0.09705719133512503
RSADFGRTW	9	Unmodified	_RSADFGRTW_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.2703857421875	2	548.270147	1094.52574	-1.3366	-0.0007328	-0.41245	-0.00022613	-1.749	-0.00095893	548.269896841911	38.905	0.98382	38.74	38.32	39.304	-0.16458					70	26	5	0	0	0	0.22379	2	3253	3253;3265		85.862	18.368	1	3144300			69579	8233	48765	48845	75746;75747	75746					-0.01774080127825073
RSADFGRTW	9	Unmodified	_RSADFGRTW_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.2700805664062	2	548.270147	1094.52574	-0.7305	-0.00040051	-0.3318	-0.00018192	-1.0623	-0.00058243	548.2698610571854	38.942	0.96628	38.719	38.416	39.382	-0.22311					59	25	3	0	0	0	0.25614	2	3247	3247;3257		81.525	18.219	1	2589700			69580	8233	48765	48845	75748;75749	75748					-0.01774080127825073
RSADFGRTW	9	Unmodified	_RSADFGRTW_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.2703857421875	2	548.270147	1094.52574	-0.3378	-0.00018521	-0.94752	-0.00051949	-1.2853	-0.0007047	548.2695503479279	38.972	0.79887	38.746	38.443	39.242	-0.2257					54	21	3	0	0	0	0.33603	1	3251	3251		70.816	21.28	1	2405700			69581	8233	48765	48845	75750	75750					-0.01774080127825073
RSAEEGRYIW	10	Unmodified	_RSAEEGRYIW_					0	0	0			REV__ENST00000497891.1_1_7:143098260-143104736:-|nuORF;REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.2560729980469	3	422.879038	1265.61528	0.039702	1.6789E-05	-3.2235	-0.0013631	-3.1838	-0.0013464	423.2120291850267	21.731	0.72307	21.54	21.177	21.9	-0.19072					27	14	3	0	0	0	0.03519	1	724	724		9.6461	0	1	50194	+		69582	24519;33861	48766	48846	75751	75751					-0.006898702391026745
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2745056152344	2	502.274564	1002.53457	-0.34479	-0.00017318	-0.40971	-0.00020579	-0.75449	-0.00037896	502.2743666614946	48.637	1.8074	48.637	48.277	50.084	0					145	50	5	0	0	0	0.094442	2	4975	4943;4975		112.41	16.596	1	33137000			69583	10702	48767	48847	75752;75753	75753					0.03340848718016787
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2744140625	2	502.274564	1002.53457	-0.48341	-0.0002428	-0.23972	-0.00012041	-0.72313	-0.00036321	502.2744610648782	48.78	1.9579	48.628	48.295	50.253	-0.15277					142	54	5	0	0	0	0.03666	7	4994	4949;4958;4969;4994;5006;5019;5031		136.27	34.667	1	24249000			69584	10702	48767	48847	75754;75755;75756;75757;75758;75759;75760	75757					0.03340848718016787
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2743225097656	2	502.274564	1002.53457	-0.39647	-0.00019914	-0.3691	-0.00018539	-0.76558	-0.00038453	502.2744118269498	48.48	1.9747	48.547	48.191	50.165	0.066795					146	54	5	0	0	0	0.10464	4	4860	4860;4882;4907;4933		109.48	21.814	1	23991000			69585	10702	48767	48847	75761;75762;75763;75764	75761					0.03340848718016787
RSAFPKIEDTE	11	Unmodified	_RSAFPKIEDTE_					0	0	0		ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.2357482910156	3	431.55422	1291.64083	0.047218	2.0377E-05	0.78818	0.00034014	0.8354	0.00036052	431.5544273002892	35.778	0.31566	35.565	35.434	35.75	-0.21246					16	8	4	0	0	0	0.024749	1	2753	2753		7.0192	2.8244	1	230180			69586	3308	48768	48848	75765	75765					0.006675594926491613
RSAGLQPAGT	10	Unmodified	_RSAGLQPAGT_					0	0	0			REV__ENST00000579003.1_1_17:56409563-56409842:-|nuORF	REV__ENST00000579003.1_1_17:56409563-56409842:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7939758300781	2	479.259248	956.503943	-1.1254	-0.00053934	-3.0066	-0.0014409	-4.1319	-0.0019803	479.2578170278367	65.118	0.37943	64.855	64.686	65.065	-0.2626					16	9	2	0	0	0	0.03519	1	7665	7665		24.519	0	1	173960	+		69587	35499	48769	48849	75766	75766					0.023951151236246915
RSAGWRDDL	9	Unmodified	_RSAGWRDDL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7823486328125	2	538.267604	1074.52066	-0.53185	-0.00028628	-2.3995	-0.0012916	-2.9314	-0.0015779	538.2662665614927	50.41	0.79431	50.258	49.996	50.79	-0.1512					36	23	2	0	0	0	0.024427	1	5249	5249		26.693	7.5894	1	339580			69588	2678	48770	48850	75767	75767					-0.013623839904312263
RSAIGPGRSRA	11	Unmodified	_RSAIGPGRSRA_					0	0	0		ENST00000529258.1_1_11:27494326-27503790:+|nuORF;ENST00000525833.5_1_11:27494326-27494779:+|nuORF	ENST00000529258.1_1_11:27494326-27503790:+|nuORF	ENST00000529258.1_1_11:27494326-27503790:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8448486328125	2	564.323245	1126.63194	-0.63336	-0.00035742	1.6314	0.00092063	0.99803	0.00056321	564.3238749143144	66.028	0.38365	66.058	65.737	66.121	0.030098					20	9	3	0	0	0	0.024768	1	7735	7735		30.569	0	1	212750			69589	16104	48771	48851	75768	75768					0.07368675437533057
RSAIIETL	8	Unmodified	_RSAIIETL_					0	0	0			REV__ENST00000513428.5_1_4:122602814-122617744:-|nuORF	REV__ENST00000513428.5_1_4:122602814-122617744:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2375793457031	2	451.768917	901.523281	0.033579	1.517E-05	-0.33767	-0.00015255	-0.30409	-0.00013738	451.76875442995373	27.512	1.0502	27.27	26.954	28.004	-0.24217					63	24	4	0	0	0	0.027866	1	1484	1484		14.137	3.2716	1	4520100	+		69590	25695	48772	48852	75769	75769					0.06858071414524147
RSAKDSLAW	9	Unmodified	_RSAKDSLAW_					0	0	0		ENSG00000023697|ENST00000428559|DERA	ENSG00000023697|ENST00000428559|DERA	ENSG00000023697|ENST00000428559|DERA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.3165283203125	2	517.274898	1032.53524	-0.13819	-7.1483E-05	2.1863	0.0011309	2.0481	0.0010594	517.2758258493363	29.467	0.63004	29.318	28.912	29.542	-0.14952					22	14	2	0	0	0	0.024374	1	1769	1769		40.778	0	1	155470			69591	975	48773	48853	75770	75770					0.02027688157704688
RSAKEEPSP	9	Unmodified	_RSAKEEPSP_					0	0	0			REV__ENST00000473750.5_1_2:220147533-220149706:+|nuORF	REV__ENST00000473750.5_1_2:220147533-220149706:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.3088684082031	2	500.756538	999.498523	-0.46682	-0.00023376	0.7307	0.0003659	0.26389	0.00013214	500.7566740985168	32.097	0.47659	32.109	31.823	32.299	0.011795					17	11	2	0	0	0	0.024209	1	2175	2175		66.429	9.7082	1	144290	+		69592	23599	48774	48854	75771	75771					-0.001246084588501617
RSALATRR	8	Unmodified	_RSALATRR_					0	0	0			REV__GDF6|p.F338L|1|0.34|ENSG00000156466|chr8:96144917-96144917|G/T|missense_variant	REV__GDF6|p.F338L|1|0.34|ENSG00000156466|chr8:96144917-96144917|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.75384521484375	2	465.783225	929.551896	-0.51104	-0.00023803	-2.5945	-0.0012085	-3.1055	-0.0014465	465.7818843245496	23.552	0.2537	23.491	23.347	23.6	-0.060862					7	5	2	0	0	0	0.027866	1	943	943		17.365	0	1	40664	+		69593	36068	48775	48855	75772	75772					0.08430233834315004
RSALEAVQW	9	Unmodified	_RSALEAVQW_					0	0	0			REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2821044921875	2	530.282723	1058.55089	-0.34754	-0.00018429	-0.032973	-1.7485E-05	-0.38051	-0.00020178	530.2827740379463	56.088	0.94342	55.872	55.447	56.39	-0.21607					59	24	4	0	0	0	0.32811	1	6057	6057		71.877	6.4121	1	3151100	+		69594	30866	48776	48856	75773	75773					0.023959746747550525
RSALEAVQW	9	Unmodified	_RSALEAVQW_					0	0	0			REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	REV__ENST00000358758.11_1_16:29825955-29826759:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	530.282723	1058.55089	-0.85756	-0.00045475	0.73173	0.00038802	-0.12584	-6.6729E-05	530.2830288664173	55.995	1.0846	55.839	55.211	56.295	-0.15655	-0.034812	0.00035362	NaN	71.877	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3206700	+		69595	30866	48776	48856							0.023959746747550525
RSALEKLIL	9	Unmodified	_RSALEKLIL_					0	0	0		chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8346557617188	2	521.834591	1041.65463	-0.6794	-0.00035454	0.21234	0.00011081	-0.46706	-0.00024373	521.8346325329472	69.245	1.0165	69.245	68.898	69.915	0					82	25	4	0	0	0	0.45795	1	8335	8335		62.107	1.8135	1	5249100			69596	274	48777	48857	75774	75774					0.13546881782417586
RSALEKLIL	9	Unmodified	_RSALEKLIL_					0	0	0		chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8343505859375	2	521.834591	1041.65463	0.36136	0.00018857	-0.80413	-0.00041962	-0.44277	-0.00023105	521.8340958344138	69.57	1.0639	69.277	68.896	69.96	-0.29292					79	26	4	0	0	0	0.30449	1	8348	8348		75.043	14.925	1	4184400			69597	274	48777	48857	75775	75775					0.13546881782417586
RSALEKLIL	9	Unmodified	_RSALEKLIL_					0	0	0		chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	chr1:153070858-153071569|442|1713.13|0.0|27.35|-|0|SPRR2B,SPRR2B|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.834228515625	2	521.834591	1041.65463	-0.57935	-0.00030232	-0.0052191	-2.7235E-06	-0.58457	-0.00030505	521.834532631446	69.308	1.0601	69.323	68.974	70.034	0.015129					68	26	3	0	0	0	0.5973	1	8259	8259		52.937	0	1	4382800			69598	274	48777	48857	75776	75776					0.13546881782417586
RSALFAGNEW	10	Unmodified	_RSALFAGNEW_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.7848510742188	2	575.78563	1149.55671	-0.26039	-0.00014993	0.8044	0.00046316	0.54401	0.00031323	575.7859248895614	60.789	0.7961	60.583	60.254	61.05	-0.20599					60	19	4	0	0	0	0.060517	3	6782	6769;6782;6793		145.46	63.22	1	2692000			69599	5147	48778	48858	75777;75778;75779	75778					-0.012089268135923703
RSALFAGNEW	10	Unmodified	_RSALFAGNEW_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.78515625	2	575.78563	1149.55671	-1.2052	-0.00069393	1.7911	0.0010313	0.58591	0.00033736	575.7865460424102	60.558	0.71741	60.382	60.156	60.874	-0.1761					52	17	4	0	0	0	0.0272	3	6749	6738;6749;6761		157.34	63.338	1	3190100			69600	5147	48778	48858	75780;75781;75782	75781					-0.012089268135923703
RSALFAGNEW	10	Unmodified	_RSALFAGNEW_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.7849731445312	2	575.78563	1149.55671	-0.96568	-0.00055603	1.4925	0.00085935	0.52679	0.00030332	575.7863587555179	60.78	0.8004	60.526	60.294	61.095	-0.25373					56	19	4	0	0	0	0.060517	3	6769	6756;6769;6788		145.46	57.764	1	2793800			69601	5147	48778	48858	75783;75784;75785	75784					-0.012089268135923703
RSALPTKTV	9	Unmodified	_RSALPTKTV_					0	0	0		nc|ENSG00000273611|Q15649-2|ZNHIT3;ENSG00000273611|ENST00000617429|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7946472167969	2	486.795466	971.57638	-0.97505	-0.00047465	0.23272	0.00011329	-0.74233	-0.00036136	486.7953450035978	28.385	0.69677	28.385	27.999	28.696	0					45	16	4	0	0	0	0.22902	3	1639	1635;1639;1650		85.161	9.6475	1	2380600			69602	11021	48779	48859	75786;75787;75788	75787					0.08945449197176458
RSALPTKTV	9	Unmodified	_RSALPTKTV_					0	0	0		nc|ENSG00000273611|Q15649-2|ZNHIT3;ENSG00000273611|ENST00000617429|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.795166015625	2	486.795466	971.57638	-0.55881	-0.00027203	-0.39325	-0.00019143	-0.95206	-0.00046346	486.7950619066371	28.356	0.66957	28.352	28.078	28.747	-0.0042019					42	15	4	0	0	0	0.18994	2	1634	1618;1634		90.601	20.973	1	2424100			69603	11021	48779	48859	75789;75790	75790					0.08945449197176458
RSALPTKTV	9	Unmodified	_RSALPTKTV_					0	0	0		nc|ENSG00000273611|Q15649-2|ZNHIT3;ENSG00000273611|ENST00000617429|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.79498291015625	2	486.795466	971.57638	-0.74307	-0.00036172	-0.069454	-3.381E-05	-0.81253	-0.00039553	486.79511999873097	28.146	1.0681	28.226	27.95	29.018	0.080811					50	25	4	0	0	0	0.29609	2	1561	1561;1573		76.17	19.624	1	2605200			69604	11021	48779	48859	75791;75792	75791					0.08945449197176458
RSALQSINEW	10	Unmodified	_RSALQSINEW_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	602.760009765625	2	602.309469	1202.60439	-0.79935	-0.00048145	1.0138	0.00061059	0.21441	0.00012914	602.3100848032576	57.846	0.39581	57.668	57.358	57.754	-0.17775					29	9	4	0	0	0	0.03519	1	6341	6341		41.08	23.715	1	538790			69605	6074	48780	48860	75793	75793					0.011187273866198666
RSALQSINEW	10	Unmodified	_RSALQSINEW_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	602.759521484375	2	602.309469	1202.60439	-0.38972	-0.00023473	0.22918	0.00013804	-0.16053	-9.669E-05	602.3096075420933	57.758	0.45679	57.568	57.332	57.789	-0.19017					27	11	3	0	0	0	0.03519	1	6330	6330		65.157	34.84	1	795670			69606	6074	48780	48860	75794	75794					0.011187273866198666
RSALQSINEW	10	Unmodified	_RSALQSINEW_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	602.7584228515625	2	602.309469	1202.60439	-0.49962	-0.00030092	0.5845	0.00035205	0.08488	5.1124E-05	602.3096103013011	57.901	0.31652	57.668	57.424	57.74	-0.23363					17	7	3	0	0	0	0.03519	1	6329	6329		50.791	15.613	1	630180			69607	6074	48780	48860	75795	75795					0.011187273866198666
RSALVARPD	9	Unmodified	_RSALVARPD_					0	0	0			REV__ENSG00000122863|ENST00000373115|CHST3	REV__ENSG00000122863|ENST00000373115|CHST3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2528076171875	2	492.78289	983.551228	-0.063366	-3.1226E-05	-3.8895	-0.0019167	-3.9529	-0.0019479	492.781100409298	55.797	0.48443	55.641	55.367	55.852	-0.15601					28	12	3	0	0	0	0.024418	1	6148	6148		45.972	11.8	1	305590	+		69608	22667	48781	48861	75796	75796					0.05879394394605697
RSAPGKPRRRS	11	Unmodified	_RSAPGKPRRRS_					0	0	0		nc|ENSG00000121274|Q8NDF8-5|TENT4B	nc|ENSG00000121274|Q8NDF8-5|TENT4B	nc|ENSG00000121274|Q8NDF8-5|TENT4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	634.3758544921875	2	634.376343	1266.73813	-0.92735	-0.00058829	1.4387	0.00091265	0.51131	0.00032436	634.3771743485321	110.71	0.50396	110.59	110.51	111.02	-0.12524					33	17	2	0	0	0	1.0521	1	13618	13618		24.519	0.31644	1	4299400			69609	18222	48782	48862	75797	75797					0.11543431002814941
RSAPLLLL	8	Unmodified	_RSAPLLLL_					0	0	0		ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.26641845703125	2	441.792195	881.569838	-0.38093	-0.00016829	0.59216	0.00026161	0.21124	9.3322E-05	441.7923817454113	60.837	0.56185	60.837	60.582	61.144	0					22	14	2	0	0	0	0.027866	1	6999	6999		29.15	0	1	376080			69610	16643	48783	48863	75798	75798					0.12431556036472102
RSAPLLLLS	9	Unmodified	_RSAPLLLLS_					0	0	0		ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77691650390625	2	485.30821	968.601866	-1.2211	-0.00059261	2.4854	0.0012062	1.2643	0.00061358	485.30931686243406	30.696	0.82486	30.696	30.137	30.961	0					27	19	2	0	0	0	0.024397	1	1922	1922		31.53	15.057	1	159160			69611	16643	48784	48864	75799	75799					0.11630923719621933
RSAPPGPFAW	10	Unmodified	_RSAPPGPFAW_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2802124023438	2	543.279983	1084.54541	-0.47634	-0.00025879	-0.3637	-0.00019759	-0.84004	-0.00045638	543.279932079317	62.007	0.98759	61.793	61.375	62.362	-0.21375					113	24	6	0	0	0	0.45418	8	6941	6919;6929;6941;6953;6965;6977;6989;7002		93.143	40.207	1	31083000			69612	614	48785	48865	75800;75801;75802;75803;75804;75805;75806;75807	75802					0.006522958829464187
RSAPPGPFAW	10	Unmodified	_RSAPPGPFAW_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2803344726562	2	543.279983	1084.54541	-1.065	-0.00057859	0.17688	9.6095E-05	-0.88812	-0.0004825	543.2801945113039	61.904	1.0963	61.726	61.287	62.383	-0.17782					114	27	6	0	0	0	0.45418	7	6910	6910;6934;6946;6958;6970;6983;6997		93.143	49.026	1	28882000			69613	614	48785	48865	75808;75809;75810;75811;75812;75813;75814	75808					0.006522958829464187
RSAPPGPFAW	10	Unmodified	_RSAPPGPFAW_					0	0	0		CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant;ENSG00000138061|ENST00000610745|CYP1B1	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.2799682617188	2	543.279983	1084.54541	-0.7909	-0.00042968	0.011012	5.9829E-06	-0.77989	-0.0004237	543.2801321945111	62.093	1.0653	61.835	61.383	62.449	-0.25725					116	26	6	0	0	0	0.54901	9	6953	6919;6929;6941;6953;6965;6977;6990;7003;7017		82.75	38.124	1	28848000			69614	614	48785	48865	75815;75816;75817;75818;75819;75820;75821;75822;75823	75818					0.006522958829464187
RSAQARVTV	9	Unmodified	_RSAQARVTV_					0	0	0		nc|ENSG00000143768|O00292-2|LEFTY2;ENSG00000143768|ENST00000366820|LEFTY2	nc|ENSG00000143768|O00292-2|LEFTY2	nc|ENSG00000143768|O00292-2|LEFTY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7674560546875	2	494.28834	986.562127	-0.16318	-8.0657E-05	3.7415	0.0018494	3.5784	0.0017687	494.29007208239096	41.04	0.45924	41.063	40.83	41.29	0.023006					29	12	3	0	0	0	0.024344	1	3576	3576		37.812	5.8567	1	404310			69615	5685	48786	48866	75824	75824					0.06830796768895198
RSAQKFASFY	10	Unmodified	_RSAQKFASFY_					0	0	0			REV__XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	REV__XDH|p.I1238Lfs*54|1|0.23|ENSG00000158125|chr2:31339552-31339552|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.8664245605469	3	402.208495	1203.60366	0.42607	0.00017137	-0.73928	-0.00029734	-0.31321	-0.00012598	402.2078490572979	43.372	0.69593	43.26	42.997	43.693	-0.11253					36	18	3	0	0	0	0.03519	1	3942	3942		20.03	10.384	1	1205200	+		69616	25177	48787	48867	75825	75825					0.009999327375680878
RSAQLKIK	8	Unmodified	_RSAQLKIK_					0	0	0			REV__ENSG00000166510|ENST00000591504|CCDC68	REV__ENSG00000166510|ENST00000591504|CCDC68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7918701171875	2	472.306001	942.597449	0.35065	0.00016561	-0.82961	-0.00039183	-0.47896	-0.00022621	472.30574191489166	18.504	0.54486	18.3	18.113	18.658	-0.20371					17	10	2	0	0	0	0.027866	1	303	303		42.396	0	1	231250	+		69617	26030	48788	48868	75826	75826					0.1238545929669499
RSAQQPRR	8	Unmodified	_RSAQQPRR_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1;ENST00000523266.5_1_8:21924216-21924321:+|nuORF	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.77520751953125	2	499.783756	997.552959	0.29912	0.0001495	1.8651	0.00093216	2.1642	0.0010817	499.78462815779676	50.202	0.52133	50.283	49.989	50.51	0.080994					34	15	4	0	0	0	0.027866	1	5213	5213		40.573	1.7665	1	1975400			69618	10614	48789	48869	75827	75827					0.054084482032294545
RSARLYDDK	9	Unmodified	_RSARLYDDK_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2977905273438	2	562.296362	1122.57817	0.39736	0.00022343	2.7783	0.0015623	3.1757	0.0017857	562.2980780658523	58.515	0.65965	58.273	58.001	58.661	-0.24165					27	15	3	0	0	0	0.51687	1	6423	6423		58.23	6.8945	1	2368600	+		69619	25812	48790	48870	75828	75828					0.02178458215144019
RSARQMIGL	9	Unmodified	_RSARQMIGL_					0	0	0			REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2859497070312	2	516.292568	1030.57058	-0.25074	-0.00012946	1.0395	0.0005367	0.78878	0.00040724	516.2930997773041	50.92	0.51287	50.77	50.495	51.008	-0.14916					29	14	3	0	0	0	0.024205	1	5333	5333		44.117	0	1	496520	+		69620	32864	48791	48871	75829	75829					0.05652027413862015
RSARQMIGL	9	Unmodified	_RSARQMIGL_					0	0	0			REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2865600585938	2	516.292568	1030.57058	-0.87911	-0.00045388	0.25789	0.00013315	-0.62122	-0.00032073	516.2925644664887	50.578	0.54319	50.659	50.377	50.92	0.08099					36	15	3	0	0	0	0.024294	1	5252	5252		37.159	0	1	681540	+		69621	32864	48791	48871	75830	75830					0.05652027413862015
RSARQMIGL	9	Unmodified	_RSARQMIGL_					0	0	0			REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	REV__ENST00000460852.1_1_1:202302426-202304891:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.292568	1030.57058	0.27231	0.00014059	-5.754	-0.0029707	-5.4817	-0.0028302	516.289485977055	50.84	0.40784	50.729	50.451	50.859	-0.11163	-0.015385	-0.0045378	NaN	35.618	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339850	+		69622	32864	48791	48871							0.05652027413862015
RSARVFRW	8	Unmodified	_RSARVFRW_					0	0	0			REV__ENST00000417399.5_1_7:55589394-55589544:-|nuORF	REV__ENST00000417399.5_1_7:55589394-55589544:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7793579101562	2	539.306867	1076.59918	-1.1967	-0.00064537	-0.53558	-0.00028884	-1.7322	-0.00093421	539.3065776651476	44.444	0.32728	44.339	44.099	44.426	-0.10468					11	8	2	0	0	0	0.027866	1	4142	4142		40.573	7.057	1	166520	+		69623	32093	48792	48872	75831	75831					0.06394513105306032
RSARWTCCL	9	Unmodified	_RSARWTCCL_					0	0	0		ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.7960815429688	2	548.262953	1094.51135	-0.4668	-0.00025593	2.3159	0.0012697	1.8491	0.0010138	548.2640141442864	53.943	0.46739	53.745	53.523	53.99	-0.19739					19	14	2	0	0	0	0.024495	1	5695	5695		19.997	0	1	288490			69624	3109	48793	48873	75832	75832					-0.03212191871966752
RSASEEQALSQ	11	Unmodified	_RSASEEQALSQ_					0	0	0		nc|ENSG00000137343|Q5SQI0|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;ENST00000479562.1_1_6:30613824-30614417:+|nuORF	nc|ENSG00000137343|Q5SQI0|ATAT1	nc|ENSG00000137343|Q5SQI0|ATAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.55706787109375	3	402.530074	1204.56839	-0.9565	-0.00038502	-3.9993	-0.0016098	-4.9558	-0.0019949	402.5283916407918	61.224	1.8826	60.97	59.904	61.786	-0.25374					66	46	3	0	0	0	0.024746	1	6917	6917		23.514	0	1	741630			69625	18312	48794	48874	75833	75833					-0.025707745808858817
RSASLGEGID	10	Unmodified	_RSASLGEGID_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-10|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-10|SLC4A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.78179931640625	2	502.753995	1003.49344	0.017626	8.8613E-06	-0.83741	-0.00042101	-0.81979	-0.00041215	502.75338691726	28.519	0.98297	28.599	28.035	29.018	0.080811					58	23	4	0	0	0	0.03519	1	1577	1577		51.193	0	1	1208100	+		69626	36444	48795	48875	75834	75834					-0.00816912321477048
RSASLRSWLP	10	Unmodified	_RSASLRSWLP_					0	0	0		ENST00000517677.5_1_5:150512707-150518279:-|nuORF	ENST00000517677.5_1_5:150512707-150518279:-|nuORF	ENST00000517677.5_1_5:150512707-150518279:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.2319946289062	2	586.830372	1171.64619	-0.57706	-0.00033864	3.0704	0.0018018	2.4933	0.0014632	586.8322536600225	48.176	1.4346	47.989	47.561	48.995	-0.18684					63	38	2	0	0	0	0.03519	1	4897	4897		38.754	14.234	1	198580			69627	15915	48796	48876	75835	75835					0.06723327865779538
RSASSEEASES	11	Unmodified	_RSASSEEASES_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;BCORL1|p.P1681Qfs*20|1|0.89|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant;ENSG00000085185|ENST00000540052|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	569.7822265625	2	570.244189	1138.47382	-1.1775	-0.00067147	0.18875	0.00010763	-0.98877	-0.00056384	570.2440633071182	24.96	0.59362	24.925	24.681	25.275	-0.034395					20	13	2	0	0	0	0.024355	1	1107	1107		54.722	5.1863	1	97094			69628	183	48797	48877	75836	75836					-0.08987333122877317
RSASSEEASES	11	Unmodified	_RSASSEEASES_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;BCORL1|p.P1681Qfs*20|1|0.89|ENSG00000085185|chrX:130056036-130056036|C/-|frameshift_variant;ENSG00000085185|ENST00000540052|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	570.244189	1138.47382	-0.43242	-0.00024658	-0.94302	-0.00053775	-1.3754	-0.00078433	570.243387404798	24.752	0.6251	24.831	24.547	25.173	0.078346	-0.047453	-0.0006848	NaN	54.722	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56985			69629	183	48797	48877							-0.08987333122877317
RSASSPSTVH	10	Unmodified	_RSASSPSTVH_					0	0	0			REV__nc|ENSG00000145113|Q99102-17|MUC4	REV__nc|ENSG00000145113|Q99102-17|MUC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3125	2	514.759612	1027.50467	3.1353	0.0016139	-2.3592	-0.0012144	0.77612	0.00039951	514.7584176407819	17.879	0.39039	17.879	17.697	18.087	0					12	7	2	0	0	0	0.03519	1	204	204		45.972	0	1	41469	+		69630	36751	48798	48878	75837	75837					-0.007980902273402535
RSATSLLC	8	Unmodified	_RSATSLLC_					0	0	0		ENST00000259883.3_1_6:28249363-28249588:+|nuORF	ENST00000259883.3_1_6:28249363-28249588:+|nuORF	ENST00000259883.3_1_6:28249363-28249588:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.74951171875	2	425.726195	849.437837	0.006404	2.7264E-06	2.5076	0.0010675	2.514	0.0010703	425.7268525226547	25.956	0.26595	25.785	25.659	25.925	-0.17078					12	7	3	0	0	0	0.027866	1	1261	1261		6.3127	0	1	79316			69631	11439	48799	48879	75838	75838					0.007095829571994727
RSAVGFLFW	9	Unmodified	_RSAVGFLFW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN;ENST00000591949.1_1_19:36237385-36237745:+|nuORF	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.7931518554688	2	541.792727	1081.5709	0.40271	0.00021819	-0.6601	-0.00035764	-0.25739	-0.00013945	541.7922250654052	84.2	0.97728	84.041	83.801	84.778	-0.15869					38	22	2	0	0	0	0.45795	1	10189	10189		62.107	1.1355	1	586230			69632	10408	48800	48880	75839	75839					0.03337770405369156
RSAVGFLFW	9	Unmodified	_RSAVGFLFW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN;ENST00000591949.1_1_19:36237385-36237745:+|nuORF	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.7926025390625	2	541.792727	1081.5709	-0.36216	-0.00019622	0.33798	0.00018311	-0.024182	-1.3102E-05	541.7927100014402	84.267	0.90377	84.13	83.801	84.705	-0.13789					47	20	3	0	0	0	0.45795	1	10179	10179		62.107	3.3255	1	605850			69633	10408	48800	48880	75840	75840					0.03337770405369156
RSAVGFLFW	9	Unmodified	_RSAVGFLFW_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN;ENST00000591949.1_1_19:36237385-36237745:+|nuORF	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.792727	1081.5709	0.1767	9.5735E-05	-0.016139	-8.744E-06	0.16056	8.6991E-05	541.7925072962614	84.372	0.89583	84.169	83.82	84.716	-0.20329	0.055606	9.7118E-05	NaN	62.107	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607660			69634	10408	48800	48880							0.03337770405369156
RSAVGSAQLL	10	Unmodified	_RSAVGSAQLL_					0	0	0		nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2950134277344	2	501.290548	1000.56654	0.18746	9.3974E-05	3.5033	0.0017562	3.6907	0.0018501	501.2921172049721	50.437	1.7659	50.331	49.449	51.215	-0.10558					124	46	4	0	0	0	0.66532	1	5129	5129		69.628	3.1983	1	12672000			69635	10084	48801	48881	75841	75841					0.06628261191792717
RSAVRKLA	8	Unmodified	_RSAVRKLA_					0	0	0			REV__TTC3|p.K1173R|1|0.13|ENSG00000182670|chr21:37165732-37165732|A/G|missense_variant	REV__TTC3|p.K1173R|1|0.13|ENSG00000182670|chr21:37165732-37165732|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7812805175781	2	450.790518	899.566484	-0.1121	-5.0532E-05	4.3418	0.0019573	4.2297	0.0019067	450.79244866185	98.302	0.1205	98.136	98.037	98.158	-0.1652					4	2	2	0	0	0	0.027866	1	12150	12150		25.574	19.261	1	39053	+		69636	37741	48802	48882	75842	75842					0.11268305982468974
RSCAEGPPL	9	Unmodified	_RSCAEGPPL_					0	0	0			REV__ENST00000489562.5_1_9:97811083-97823030:+|nuORF	REV__ENST00000489562.5_1_9:97811083-97823030:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.286865234375	2	465.229102	928.443651	-1.3199	-0.00061405	-4.4645	-0.002077	-5.7844	-0.0026911	465.2263118405592	75.344	0.3016	75.344	75.076	75.378	0					10	7	2	0	0	0	0.024436	1	9238	9238		30.504	12.179	1	252820	+		69637	33671	48803	48883	75843	75843					-0.023433185311205307
RSCCSCFRW	9	Unmodified	_RSCCSCFRW_					0	0	0			REV__ENST00000470188.5_1_7:105517620-105517671:+|nuORF	REV__ENST00000470188.5_1_7:105517620-105517671:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2816162109375	2	574.233338	1146.45212	0.97378	0.00055918	3.3583	0.0019284	4.332	0.0024876	574.2346886444735	59.638	0.43979	59.44	59.173	59.613	-0.19742					15	10	2	0	0	0	0.024539	1	6571	6571		14.865	0	1	188160	+		69638	33148	48804	48884	75844	75844					-0.11524411157802206
RSCFRAPL	8	Unmodified	_RSCFRAPL_					0	0	0			REV__ENSG00000134463|ENST00000379215|ECHDC3	REV__ENSG00000134463|ENST00000379215|ECHDC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.764404296875	2	475.255454	948.496355	0.62064	0.00029496	-2.3032	-0.0010946	-1.6826	-0.00079967	475.2528383717924	92.124	0.64573	92.133	91.658	92.304	0.009407					21	15	2	0	0	0	0.027866	1	11594	11594		21.96	9.753	1	34299	+		69639	23456	48805	48885	75845	75845					0.02004684322344019
RSCGFWPGY	9	Unmodified	_RSCGFWPGY_					0	0	0		nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENSG00000110756|ENST00000349215|HPS5	nc|ENSG00000110756|Q9UPZ3-2|HPS5	nc|ENSG00000110756|Q9UPZ3-2|HPS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3057861328125	2	536.737094	1071.45964	-0.67073	-0.00036001	-3.0068	-0.0016139	-3.6775	-0.0019739	537.2369390808261	47.917	0.33634	47.82	47.63	47.966	-0.097553					12	8	2	0	0	0	0.024487	1	4708	4708		24.203	0	1	60755			69640	3061	48806	48886	75846	75846					-0.07323612294226223
RSCGLATL	8	Unmodified	_RSCGLATL_					0	0	0			REV__nc|ENSG00000159212|Q96NY7|CLIC6	REV__nc|ENSG00000159212|Q96NY7|CLIC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.563232421875	2	410.720913	819.427273	0.56075	0.00023031	-3.452	-0.0014178	-2.8912	-0.0011875	410.71943343610627	32.699	0.6137	32.507	32.249	32.863	-0.19261					30	14	3	0	0	0	0.027866	1	2265	2265		31.955	2.8053	1	528860	+		69641	36823	48807	48887	75847	75847					0.010336003027759944
RSCGTTREL	9	Unmodified	_RSCGTTREL_					0	0	0		ENSG00000188316|ENST00000341276|ENO4;nc|ENSG00000188316|A6NNW6-2|ENO4	ENSG00000188316|ENST00000341276|ENO4	ENSG00000188316|ENST00000341276|ENO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7892150878906	2	511.756015	1021.49748	-0.90309	-0.00046216	3.362	0.0017205	2.4589	0.0012584	511.75765942071024	43.506	0.60174	43.28	42.989	43.591	-0.22597					24	16	2	0	0	0	0.024511	1	3941	3941		13.454	0	1	482400			69642	9708	48808	48888	75848	75848					-0.012411460994144363
RSCIRRPR	8	Unmodified	_RSCIRRPR_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2913818359375	2	522.303801	1042.59305	0.6739	0.00035198	2.1645	0.0011305	2.8384	0.0014825	522.3049269893306	19.277	0.49364	19.277	18.823	19.317	0					16	9	2	0	0	0	0.027866	1	367	367		17.365	1.7232	1	44701	+		69643	36628	48809	48889	75849	75849					0.07345671602138282
RSCPADTAR	9	Unmodified	_RSCPADTAR_					0	0	0			REV__ENST00000590511.1_1_19:5717496-5719991:-|nuORF	REV__ENST00000590511.1_1_19:5717496-5719991:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2716979980469	2	488.735083	975.455613	-1.4999	-0.00073307	-2.3554	-0.0011512	-3.8554	-0.0018842	488.7338861669093	38.731	0.50971	38.566	38.285	38.795	-0.16459					21	13	2	0	0	0	0.024523	1	3258	3258		29.15	3.6994	1	188770	+		69644	35702	48810	48890	75850	75850					-0.0330970178795269
RSCRGLPGQV	10	Unmodified	_RSCRGLPGQV_					0	0	0		ENST00000229328.9_1_12:120105820-120106006:+|nuORF	ENST00000229328.9_1_12:120105820-120106006:+|nuORF	ENST00000229328.9_1_12:120105820-120106006:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3292236328125	2	536.78765	1071.56075	-0.70761	-0.00037984	-4.0733	-0.0021865	-4.7809	-0.0025663	536.7853277785468	43.755	0.65324	43.785	43.376	44.029	0.030823					39	17	4	0	0	0	0.03519	1	4076	4076		26.063	10.422	1	762530			69645	11226	48811	48891	75851	75851					0.027828394084963293
RSCSSRSVEG	10	Unmodified	_RSCSSRSVEG_					0	0	0			REV__ENST00000560170.1_1_15:96828545-96870526:-|nuORF;REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF	REV__ENST00000560170.1_1_15:96828545-96870526:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2755737304688	2	534.248554	1066.48256	-0.36091	-0.00019282	-2.1726	-0.0011607	-2.5335	-0.0013535	534.7497979409173	49.893	0.32831	49.742	49.596	49.924	-0.1512					14	8	2	0	0	0	0.03519	1	5147	5147		31.53	0	1	55976	+		69646	33918;35171	48812	48892	75852	75852					-0.0480263796739564
RSDATADDL	9	Unmodified	_RSDATADDL_					0	0	0		ENST00000438989.1_1_2:20440064-20440208:-|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000438989.1_1_2:20440064-20440208:-|nuORF	ENST00000438989.1_1_2:20440064-20440208:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2850036621094	2	482.222528	962.430503	0.057115	2.7542E-05	-1.5905	-0.00076696	-1.5333	-0.00073942	482.2219266987934	54.471	0.28273	54.321	54.191	54.474	-0.15036					9	7	2	0	0	0	0.024447	1	5943	5943		32.812	0	1	103660			69647	9467	48813	48893	75853	75853					-0.052214781095358376
RSDDSGHLY	9	Unmodified	_RSDDSGHLY_					0	0	0		ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.236083984375	2	525.23597	1048.45739	-0.808	-0.00042439	0.62333	0.00032739	-0.18467	-9.6996E-05	525.2361678939527	25.643	0.70432	25.416	25.148	25.852	-0.22683					45	16	4	0	0	0	0.33603	2	1231	1231;1256		70.816	28.342	1	1743500			69648	16693	48814	48894	75854;75855	75854					-0.06490369498328619
RSDDSGHLY	9	Unmodified	_RSDDSGHLY_					0	0	0		ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2359619140625	2	525.23597	1048.45739	-0.2404	-0.00012627	-0.11496	-6.038E-05	-0.35536	-0.00018665	525.2357859359679	25.436	0.73762	25.265	24.997	25.735	-0.17078					50	17	5	0	0	0	0.094442	3	1205	1195;1205;1219		112.41	55.69	1	1684900			69649	16693	48814	48894	75856;75857;75858	75857					-0.06490369498328619
RSDDSGHLY	9	Unmodified	_RSDDSGHLY_					0	0	0		ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	ENST00000555806.5_1_12:97313883-97318704:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2355346679688	2	525.23597	1048.45739	0.33655	0.00017677	-0.47219	-0.00024801	-0.13564	-7.1241E-05	525.2355828704134	25.378	0.7155	25.207	24.907	25.623	-0.17151					47	16	4	0	0	0	0.28047	2	1163	1163;1175		78.264	34.147	1	1324700			69650	16693	48814	48894	75859;75860	75859					-0.06490369498328619
RSDDTAVYY	9	Unmodified	_RSDDTAVYY_					0	0	0		nc|ENSG00000211945|A0A0C4DH31|IGHV1-18;nc|ENSG00000211934|P23083|IGHV1-2	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.24609375	2	545.246003	1088.47745	-1.7325	-0.00094464	1.3818	0.00075343	-0.35069	-0.00019121	545.2466568337019	40.521	0.91787	40.291	39.93	40.848	-0.2302					63	24	5	0	0	0	0.62163	1	3491	3491		51.335	10.763	1	4822400			69651	18705	48815	48895	75861	75861					-0.06324618558392103
RSDENQLD	8	Unmodified	_RSDENQLD_					0	0	0			REV__nc|ENSG00000187398|Q86TE4-2|LUZP2	REV__nc|ENSG00000187398|Q86TE4-2|LUZP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.2303466796875	2	488.720153	975.425752	-0.51723	-0.00025278	2.0756	0.0010144	1.5584	0.00076161	488.7207441108975	31.663	0.36098	31.663	31.428	31.789	0					12	8	2	0	0	0	0.027866	1	2106	2106		44.117	19.914	1	43323	+		69652	31918	48816	48896	75862	75862					-0.06294362252276642
RSDFFTSFY	9	Unmodified	_RSDFFTSFY_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2652587890625	2	585.266739	1168.51892	-0.52533	-0.00030746	0.5348	0.000313	0.0094707	5.5429E-06	585.2668970935914	73.124	0.78729	72.847	72.539	73.327	-0.2769					43	18	4	0	0	0	0.40693	2	8577	8577;8590		65.465	9.327	1	1108300			69653	10604;1922	48817	48897	75863;75864	75863					-0.05859437799040279
RSDFFTSFY	9	Unmodified	_RSDFFTSFY_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.266357421875	2	585.266739	1168.51892	-1.0689	-0.00062559	0.88798	0.00051971	-0.18092	-0.00010589	585.2671505889097	73.174	1.0162	72.909	72.469	73.485	-0.26479					58	24	4	0	0	0	0.16638	2	8606	8593;8606		95.815	32.509	1	1167100			69654	10604;1922	48817	48897	75865;75866	75866					-0.05859437799040279
RSDFFTSFY	9	Unmodified	_RSDFFTSFY_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.2679443359375	2	585.266739	1168.51892	-0.97925	-0.00057312	0.96131	0.00056262	-0.017946	-1.0503E-05	585.2671389301402	72.935	0.8979	72.736	72.371	73.269	-0.1981					52	21	4	0	0	0	0.247	1	8555	8555		82.75	27.986	1	1097800			69655	10604;1922	48817	48897	75867	75867					-0.05859437799040279
RSDFSFPCI	9	Unmodified	_RSDFSFPCI_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3297119140625	2	536.250034	1070.48552	-0.55498	-0.00029761	3.183	0.0017069	2.6281	0.0014093	536.2519584623029	43.725	1.0556	43.756	43.046	44.102	0.030827					42	28	2	0	0	0	0.024323	1	4084	4084		35.618	2.8059	1	281890	+		69656	20811	48818	48898	75868	75868					-0.04690762842596996
RSDLWSDE	8	Unmodified	_RSDLWSDE_					0	0	0		ENST00000609314.5_1_X:148619180-148620284:-|nuORF	ENST00000609314.5_1_X:148619180-148620284:-|nuORF	ENST00000609314.5_1_X:148619180-148620284:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7427062988281	2	504.225071	1006.43559	-1.22	-0.00061513	-2.1129	-0.0010654	-3.3329	-0.0016805	504.2241289959051	24.971	0.61555	24.936	24.546	25.161	-0.034397					23	13	3	0	0	0	0.027866	1	1071	1071		37.159	15.457	1	70007			69657	17603	48819	48899	75869	75869					-0.06737174246893574
RSDLWSDE	8	Unmodified	_RSDLWSDE_					0	0	0		ENST00000609314.5_1_X:148619180-148620284:-|nuORF	ENST00000609314.5_1_X:148619180-148620284:-|nuORF	ENST00000609314.5_1_X:148619180-148620284:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.225071	1006.43559	-0.72229	-0.0003642	-2.594	-0.0013079	-3.3163	-0.0016721	504.2237362999422	24.986	0.55827	24.986	24.653	25.211	0	0.08708	0.00027987	NaN	37.159	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53594			69658	17603	48819	48899							-0.06737174246893574
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2540283203125	2	525.254163	1048.49377	-1.1209	-0.00058875	1.197	0.00062875	0.076162	4.0004E-05	525.2546947779105	38.413	0.77029	38.233	37.908	38.678	-0.17929					63	21	4	0	0	0	0.35364	2	3186	3175;3186		85.862	36.42	1	4273000			69659	9237	48820	48900	75870;75871	75871					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2543334960938	2	525.254163	1048.49377	-0.78824	-0.00041403	1.0723	0.00056322	0.28403	0.00014919	525.2546482237427	38.451	1.2597	38.229	37.928	39.188	-0.22149					73	34	4	0	0	0	0.50263	3	3177	3169;3177;3190		76.17	26.728	1	4217400			69660	9237	48820	48900	75872;75873;75874	75873					-0.028534926015936435
RSDPGGGGLAY	11	Unmodified	_RSDPGGGGLAY_					0	0	0		ENST00000558133.1_1_15:82335503-82336997:-|nuORF;ENSG00000183496|ENST00000329713|MEX3B	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	ENST00000558133.1_1_15:82335503-82336997:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2537231445312	2	525.254163	1048.49377	-0.30286	-0.00015908	0.37349	0.00019618	0.070631	3.7099E-05	525.2542862946934	38.45	0.92046	38.231	37.926	38.846	-0.21849					67	25	4	0	0	0	0.61592	2	3179	3167;3179		68.846	13.342	1	4201200			69661	9237	48820	48900	75875;75876	75876					-0.028534926015936435
RSDPGHYSF	9	Unmodified	_RSDPGHYSF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2412109375	2	533.241055	1064.46756	-0.68959	-0.00036772	0.14483	7.7227E-05	-0.54476	-0.00029049	533.2410467455605	34.061	1.0195	33.854	33.587	34.607	-0.20696					74	25	4	0	0	0	0.32811	1	2483	2483		71.877	0	1	6151600			69662	10320	48821	48901	75877	75877					-0.06209761773106948
RSDPGHYSF	9	Unmodified	_RSDPGHYSF_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2410888671875	2	533.241055	1064.46756	-1.3364	-0.00071263	0.81209	0.00043304	-0.52433	-0.00027959	533.2414660107185	34.103	0.98783	33.928	33.583	34.571	-0.17557					79	24	5	0	0	0	0.31037	2	2476	2476;2489		74.255	3.3696	1	5840100			69663	10320	48821	48901	75878;75879	75878					-0.06209761773106948
RSDPVPTIL	9	Unmodified	_RSDPVPTIL_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.2873229980469	2	499.287474	996.560395	-0.12558	-6.2702E-05	-0.44748	-0.00022342	-0.57306	-0.00028612	499.2872665484356	55.766	1.0869	55.61	55.16	56.247	-0.15601					73	29	3	0	0	0	0.19099	1	6157	6157		90.37	5.4543	1	22451000	+		69664	27888	48822	48902	75880	75880					0.06197742960296182
RSDPVPTIL	9	Unmodified	_RSDPVPTIL_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.2875061035156	2	499.287474	996.560395	-0.8327	-0.00041576	0.28943	0.00014451	-0.54327	-0.00027125	499.287634578933	55.488	1.0259	55.586	55.183	56.209	0.098015					70	27	3	0	0	0	0.17822	1	6077	6077		93.195	8.2799	1	22365000	+		69665	27888	48822	48902	75881	75881					0.06197742960296182
RSDQSDSQNI	10	Unmodified	_RSDQSDSQNI_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.8187866210938	2	575.260173	1148.50579	0.28274	0.00016265	-3.0322	-0.0017443	-2.7495	-0.0015817	575.258410083828	68.407	0.52158	68.176	67.958	68.48	-0.23048					21	12	2	0	0	0	0.03519	1	7915	7915		42.864	7.246	1	187160	+		69666	24914	48823	48903	75882	75882					-0.06251920649060594
RSDRREDYY	9	Unmodified	_RSDRREDYY_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.5302429199219	3	420.530297	1258.56906	0.32398	0.00013624	-1.0679	-0.0004491	-0.74395	-0.00031285	420.5301383780888	23.053	0.81933	22.851	22.499	23.318	-0.20193					62	17	5	0	0	0	0.94779	1	895	895		29.17	5.7921	1	1006800			69667	9638	48824	48904	75883	75883					-0.04987935141184607
RSDSVPSLP	9	Unmodified	_RSDSVPSLP_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.26397705078125	2	479.253631	956.49271	-0.18862	-9.0397E-05	-0.31747	-0.00015215	-0.50609	-0.00024255	479.2535111426204	38.597	0.65106	38.597	38.284	38.935	0					25	16	2	0	0	0	0.024427	1	3274	3274		34.173	0	1	650080			69668	4940	48825	48905	75884	75884					0.012722930294785328
RSDSVYMV	8	Unmodified	_RSDSVYMV_					0	0	0			REV__ENST00000348993.9_1_15:85174877-85175039:+|nuORF	REV__ENST00000348993.9_1_15:85174877-85175039:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3019714355469	2	478.728935	955.443317	0.24382	0.00011673	-0.48114	-0.00023034	-0.23732	-0.00011361	478.72860109650964	33.69	0.36133	33.459	33.193	33.554	-0.23107					12	8	2	0	0	0	0.027866	1	2402	2402		23.042	0	1	94084	+		69669	30720	48826	48906	75885	75885					-0.03618738250975184
RSDSWSLANL	10	Unmodified	_RSDSWSLANL_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000575955.1_1_17:4120189-4167236:-|nuORF;ENST00000570934.5_1_17:4098183-4145738:-|nuORF;UBE2G1-ANKFY1|2|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.81884765625	2	574.78837	1147.56219	0.19461	0.00011186	-1.5457	-0.00088842	-1.351	-0.00077656	574.787282448519	68.224	0.59949	67.99	67.716	68.316	-0.23376					23	14	3	0	0	0	0.03519	1	7926	7926		24.519	0	1	243840			69670	9468	48827	48907	75886	75886					-0.005692480217476259
RSDVKLVIP	9	Unmodified	_RSDVKLVIP_					0	0	0			REV__ENSG00000106258|ENST00000222982|CYP3A5	REV__ENSG00000106258|ENST00000222982|CYP3A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7535400390625	2	513.818941	1025.62333	-0.17982	-9.2393E-05	-0.35106	-0.00018038	-0.53088	-0.00027278	513.8185906884706	50.835	0.966	50.686	50.225	51.191	-0.14916					59	27	3	0	0	0	0.024447	1	5362	5362		25.574	3.6142	1	1491600	+		69671	21603	48828	48908	75887	75887					0.11154308748336916
RSEAEDEDD	9	Unmodified	_RSEAEDEDD_					0	0	0		ENSG00000183258|ENST00000330503|DDX41;ENST00000503078.5_1_5:176943632-176943958:-|nuORF;ENST00000515562.1_1_5:176943012-176943857:-|nuORF;ENST00000505081.5_1_5:176943012-176943946:-|nuORF;ENST00000506965.5_1_5:176942058-176943946:-|nuORF	ENSG00000183258|ENST00000330503|DDX41	ENSG00000183258|ENST00000330503|DDX41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2481079101562	2	533.20199	1064.38943	-0.58085	-0.00030971	-1.6882	-0.00090015	-2.269	-0.0012099	533.2013862100864	48.973	0.36198	48.791	48.521	48.883	-0.18206					15	9	2	0	0	0	0.024523	1	4851	4851		21.96	7.095	1	187210			69672	9210	48829	48909	75888	75888					-0.14019283939660454
RSEAKHILMQ	10	Unmodified	_RSEAKHILMQ_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.1554260253906	3	404.888768	1211.64448	0.38295	0.00015505	4.3297	0.0017531	4.7127	0.0019081	404.8902020971382	32.589	0.90815	32.353	32.042	32.95	-0.23666					58	21	4	0	0	0	0.03519	1	2300	2300		21.032	0	1	416080			69673	3177	48830	48910	75889	75889					0.047119507855313714
RSEAKLVIP	9	Unmodified	_RSEAKLVIP_					0	0	0			REV__ENSG00000160870|ENST00000336374|CYP3A7	REV__ENSG00000160870|ENST00000336374|CYP3A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7646179199219	2	506.811116	1011.60768	-0.46368	-0.000235	-0.097315	-4.932E-05	-0.561	-0.00028432	507.31276374088105	39.036	0.38645	39.036	38.868	39.254	0					17	10	2	0	0	0	0.024323	1	3347	3347		35.618	0	1	93608	+		69674	25355	48831	48911	75890	75890					0.10234022231270501
RSEARGLTE	9	Unmodified	_RSEARGLTE_					0	0	0			REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	REV__ENST00000396920.7_3_10:13344112-13344301:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.77447509765625	2	509.767437	1017.52032	-1.0918	-0.00055654	2.7572	0.0014055	1.6655	0.00084899	509.7688170143692	44.521	0.3436	44.521	44.348	44.691	0					28	9	4	0	0	0	0.024418	1	4229	4229		30.318	1.1477	1	503490	+		69675	31751	48832	48912	75891	75891					0.012261962897127887
RSEARPAGR	9	Unmodified	_RSEARPAGR_					0	0	0		ENST00000603357.2_1_4:90032764-90032998:+|nuORF	ENST00000603357.2_1_4:90032764-90032998:+|nuORF	ENST00000603357.2_1_4:90032764-90032998:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.30401611328125	2	500.275764	998.536974	0.50442	0.00025235	2.3838	0.0011925	2.8882	0.0014449	500.27712925988766	58.503	0.84081	58.503	57.946	58.787	0					31	22	2	0	0	0	0.024438	1	6669	6669		29.17	0	1	433680			69676	17543	48833	48913	75892	75892					0.037647419663244364
RSEASDELI	9	Unmodified	_RSEASDELI_					0	0	0			REV__ENSG00000146005|ENST00000274710|PSD2	REV__ENSG00000146005|ENST00000274710|PSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.77459716796875	2	510.253828	1018.4931	-1.1589	-0.00059132	-1.7905	-0.0009136	-2.9494	-0.0015049	510.2529855299939	44.817	0.75132	44.668	44.222	44.974	-0.1488					36	21	2	0	0	0	0.024418	1	4234	4234		45.972	24.012	1	139390	+		69677	24450	48834	48914	75893	75893					-0.015403320413270194
RSECDHLGE	9	Unmodified	_RSECDHLGE_					0	0	0			REV__ENSG00000138829|ENST00000262464|FBN2	REV__ENSG00000138829|ENST00000262464|FBN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.314453125	2	523.222005	1044.42946	-0.26534	-0.00013883	-1.929	-0.0010093	-2.1944	-0.0011481	523.2210051241427	45.677	0.52332	45.58	45.326	45.849	-0.096649					18	14	2	0	0	0	0.024427	1	4397	4397		26.693	1.1189	1	414810	+		69678	23909	48835	48915	75894	75894					-0.0909801575005531
RSECPFLLL	9	Unmodified	_RSECPFLLL_					0	0	0		ENST00000397821.7_1_X:19554016-19554142:-|nuORF	ENST00000397821.7_1_X:19554016-19554142:-|nuORF	ENST00000397821.7_1_X:19554016-19554142:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.7985229492188	2	539.291702	1076.56885	0.24715	0.00013329	-1.8457	-0.00099536	-1.5985	-0.00086207	539.7912498701075	97.188	0.40048	97.188	97.103	97.503	-3.8147E-05					11	8	2	0	0	0	0.024457	1	12318	12318		45.952	6.6991	1	21041			69679	13605	48836	48916	75895	75895					0.033629736052489534
RSEDSTCL	8	Unmodified	_RSEDSTCL_					0	0	0		nc|ENSG00000168591|Q71RG4-2|TMUB2;ENSG00000168591|ENST00000538716|TMUB2;nc|ENSG00000168591|Q71RG4-3|TMUB2	nc|ENSG00000168591|Q71RG4-2|TMUB2	nc|ENSG00000168591|Q71RG4-2|TMUB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.74273681640625	2	455.700374	909.386196	-0.14133	-6.4405E-05	-1.2963	-0.00059074	-1.4377	-0.00065515	455.6995590189707	43.278	0.51239	43.139	42.809	43.321	-0.13929					19	13	2	0	0	0	0.027866	1	4042	4042		24.203	12.692	1	57655			69680	7842	48838	48917	75896	75896					-0.07212205527355309
RSEELSGPVGH	11	Unmodified	_RSEELSGPVGH_					0	0	0		ENST00000460788.5_1_2:241655965-241656310:-|nuORF	ENST00000460788.5_1_2:241655965-241656310:-|nuORF	ENST00000460788.5_1_2:241655965-241656310:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.8196411132812	2	584.291276	1166.568	-1.5994	-0.00093453	2.6723	0.0015614	1.0728	0.00062685	584.2937238371013	34.464	0.61711	34.464	34.129	34.746	0					17	12	2	0	0	0	0.024785	1	2615	2615		64.207	30.035	1	118060			69681	14663	48839	48918	75897	75897					-0.008621495100896936
RSEERTAQLFV	11	Unmodified	_RSEERTAQLFV_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.25445556640625	3	445.905364	1334.69426	-0.65266	-0.00029103	0.5125	0.00022853	-0.14017	-6.2501E-05	445.9060044797759	34.285	1.4094	34.11	33.742	35.151	-0.17557					72	35	4	0	0	0	0.024738	1	2557	2557		19.627	11.948	1	646240	+		69682	24745	48840	48919	75898	75898					0.040303569951674945
RSEERTAQLFV	11	Unmodified	_RSEERTAQLFV_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	445.905364	1334.69426	-0.013401	-5.9758E-06	0.068547	3.0566E-05	0.055146	2.459E-05	445.90574322354126	34.514	0.77897	34.29	33.883	34.662	-0.22412	0.11869	-0.00034124	NaN	19.627	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732530	+		69683	24745	48840	48919							0.040303569951674945
RSEERTAQLFV	11	Unmodified	_RSEERTAQLFV_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	445.905364	1334.69426	-0.24805	-0.00011061	0.17345	7.7345E-05	-0.074598	-3.3263E-05	445.90588782836693	34.322	0.69629	34.115	33.75	34.446	-0.20696	-0.056557	-0.0002009	NaN	19.627	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688050	+		69684	24745	48840	48919							0.040303569951674945
RSEISVQPV	9	Unmodified	_RSEISVQPV_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.80145263671875	2	507.782556	1013.55056	-1.0117	-0.00051374	1.4374	0.00072988	0.42566	0.00021614	507.78323907343594	55.193	0.84011	55.291	55.016	55.856	0.098015					52	22	3	0	0	0	0.024209	1	6004	6004		66.429	16.893	1	1494600			69685	9491	48841	48920	75899	75899					0.04432554954905754
RSELLCKSW	9	Unmodified	_RSELLCKSW_					0	0	0		ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	ENSG00000174576|ENST00000311034|NPAS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.270263671875	2	561.292233	1120.56991	-0.77482	-0.0004349	1.668	0.00093622	0.89315	0.00050132	561.2940002498575	26.259	0.4249	26.023	25.843	26.268	-0.23603					20	9	3	0	0	0	0.024374	1	1324	1324		32.812	6.1195	1	1973900			69686	8482	48842	48921	75900	75900					0.014451879741500306
RSENSFTNGVR	11	Unmodified	_RSENSFTNGVR_					0	0	0			REV__ENSG00000260325|ENST00000565659|HSPB9	REV__ENSG00000260325|ENST00000565659|HSPB9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.2561950683594	3	422.877697	1265.61126	-0.77588	-0.0003281	0.7412	0.00031344	-0.034683	-1.4667E-05	422.8778571138255	21.643	0.5829	21.43	21.118	21.701	-0.2128					22	11	3	0	0	0	0.024736	1	688	688		20.315	4.9819	1	65464	+		69687	29107	48843	48922	75901	75901					-0.010919597328211239
RSEPELPVE	9	Unmodified	_RSEPELPVE_					0	0	0		nc|ENSG00000124224|Q9P1A2|PPP4R1L;ENST00000244070.7_1_20:56821016-56884481:-|nuORF;nc|ENSG00000124224|Q9P1A2-3|PPP4R1L;ENST00000493688.5_1_20:56821016-56847830:-|nuORF	nc|ENSG00000124224|Q9P1A2|PPP4R1L	nc|ENSG00000124224|Q9P1A2|PPP4R1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7694091796875	2	528.272021	1054.52949	-0.74162	-0.00039178	-1.5641	-0.00082625	-2.3057	-0.001218	528.2712496575573	53.483	1.1453	53.483	52.864	54.01	0					71	31	3	0	0	0	0.023417	1	5776	5776		68.787	24.67	1	4061100			69688	11300	48844	48923	75902	75902					0.0044054485538254085
RSEPGLLIP	9	Unmodified	_RSEPGLLIP_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2;nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.290283203125	2	491.290017	980.565481	-0.60574	-0.00029759	0.43206	0.00021227	-0.17368	-8.5327E-05	491.2901471375091	73.762	1.0908	73.771	73.558	74.648	0.0096512					48	25	3	0	0	0	0.96855	1	8973	8973		26.796	0	1	5584100			69689	3577	48845	48924	75903	75903					0.07442046822916382
RSEPLRKM	8	Unmodified	_RSEPLRKM_					0	0	0			REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.80279541015625	2	508.787118	1015.55968	-0.78362	-0.00039869	-3.4627	-0.0017618	-4.2463	-0.0021605	508.784927674287	37.046	0.23596	36.826	36.726	36.962	-0.2195					6	5	2	0	0	0	0.027866	1	2961	2961		23.042	2.0956	1	40288	+		69690	37164	48846	48925	75904	75904					0.052526250395885654
RSERCMVCL	9	Carbamidomethyl (C),Oxidation (M)	_RSERC(Carbamidomethyl (C))M(Oxidation (M))VCL_	RSERC(0.994)MVC(0.006)L	RSERCM(1)VCL	RSERC(22)MVC(-22)L	RSERCM(51)VCL	0	1	1			REV__ENSG00000234127|ENST00000454678|TRIM26	REV__ENSG00000234127|ENST00000454678|TRIM26	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.2628784179688	2	585.264835	1168.51512	-0.97172	-0.00056871	-3.1594	-0.0018491	-4.1312	-0.0024178	585.2629390186464	26.291	1.4985	26.055	25.843	27.341	-0.23603					113	38	4	0	0	0	0.62163	1	1338	1338		51.335	8.4712	2	5115100	+		69691	28913	48847	48926	75905	75905	379	853			-0.06239890160395589
RSERLNQD	8	Unmodified	_RSERLNQD_					0	0	0			REV__nc|ENSG00000205277|Q9UKN1|MUC12	REV__nc|ENSG00000205277|Q9UKN1|MUC12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.29248046875	2	509.257237	1016.49992	-0.33825	-0.00017226	-2.554	-0.0013006	-2.8923	-0.0014729	509.2558784353153	52.154	1.0665	52.154	51.568	52.634	0					47	28	3	0	0	0	0.027866	1	5569	5569		47.657	5.2612	1	914030	+		69692	28668	48848	48927	75906	75906					-0.007669743700944309
RSERVRRA	8	Unmodified	_RSERVRRA_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.L485Gfs*21|1|0.5|ENSG00000147130|chrX:71249477-71249478|AA/-|frameshift_variant;ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant;ENST00000489332.1_1_X:70467340-70473105:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7901000976562	2	515.304855	1028.59516	-0.35826	-0.00018462	2.6766	0.0013793	2.3184	0.0011947	515.3063714834368	43.405	0.50211	43.293	43.034	43.536	-0.11253					27	13	3	0	0	0	0.027866	1	3956	3956		18.324	0.95945	1	287440			69693	5936	48849	48928	75907	75907					0.08200423611606311
RSERVRRA	8	Unmodified	_RSERVRRA_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ZMYM3|p.L485Gfs*21|1|0.5|ENSG00000147130|chrX:71249477-71249478|AA/-|frameshift_variant;ZMYM3|p.C546Lfs*10|1|0.4|ENSG00000147130|chrX:71248787-71248788|-/G|frameshift_variant;ENST00000489332.1_1_X:70467340-70473105:-|nuORF	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7897338867188	2	515.304855	1028.59516	-0.85322	-0.00043967	2.5887	0.001334	1.7355	0.00089432	515.3063853781548	43.607	0.27903	43.388	43.211	43.49	-0.21939					10	7	2	0	0	0	0.027866	1	3971	3971		25.45	1.2474	1	153480			69694	5936	48849	48928	75908	75908					0.08200423611606311
RSERVSMI	8	Unmodified	_RSERVSMI_					0	0	0			REV__nc|ENSG00000204632|P17693-6|HLA-G	REV__nc|ENSG00000204632|P17693-6|HLA-G	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.26507568359375	2	489.263476	976.512399	0.10189	4.9851E-05	3.0088	0.0014721	3.1107	0.0015219	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.77775	1	6051	6051		60.972	5.4677	1	81379000	+		69695	37081	48850	48929	75909	75909					0.023203457686008733
RSERWSRWDWK	11	Unmodified	_RSERWSRWDWK_					0	0	0			REV__ENST00000340124.8_1_16:46964176-46964458:+|nuORF	REV__ENST00000340124.8_1_16:46964176-46964458:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.288818359375	3	531.267407	1590.78039	-0.73317	-0.00038951	1.3018	0.00069159	0.56861	0.00030208	531.2668858674419	45.739	0.33866	45.739	45.58	45.919	0					18	9	3	0	0	0	0.024872	1	4472	4472		7.6794	0	1	182770	+		69696	30611	48851	48930	75910	75910					0.008633616205315775
RSESRRSE	8	Unmodified	_RSESRRSE_					0	0	0		ENST00000542432.5_1_12:21654105-21654499:-|nuORF;ENST00000539672.1_3_12:21654187-21654499:-|nuORF	REV__ENST00000542432.5_1_12:21654105-21654499:-|nuORF	REV__ENST00000542432.5_1_12:21654105-21654499:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7870788574219	2	503.754861	1005.49517	-1.294	-0.00065184	1.601	0.0008065	0.30702	0.00015466	503.75542663793266	37.641	0.63043	37.428	37.268	37.899	-0.21353					29	16	3	0	0	0	0.027866	1	3015	3015		23.042	2.0956	1	238490			69697	16407	48852	48931	75911	75911					-0.007358585128486084
RSESTDSLGG	10	Unmodified	_RSESTDSLGG_					0	0	0		MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant;ENSG00000160294|ENST00000291688|MCM3AP	MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.7136535644531	2	504.73326	1007.45197	-0.8295	-0.00041868	2.7167	0.0013712	1.8872	0.00095252	504.73549325639925	29.743	0.63141	29.571	29.156	29.787	-0.17258					20	14	2	0	0	0	0.03519	1	1788	1788		18.262	0	1	59576			69698	17957	48853	48932	75912	75912					-0.05146093080782066
RSESTLKMS	9	Unmodified	_RSESTLKMS_					0	0	0			REV__USP29|p.S588R|1|0.18|ENSG00000131864|chr19:57130439-57130439|T/A|missense_variant	REV__USP29|p.S588R|1|0.18|ENSG00000131864|chr19:57130439-57130439|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7929077148438	2	519.766049	1037.51754	0.10981	5.7075E-05	3.9868	0.0020722	4.0966	0.0021293	519.7664009662276	64.06	0.31923	63.802	63.637	63.956	-0.25824					11	7	2	0	0	0	0.024511	1	7272	7272		32.812	6.0163	1	74790	+		69699	37766	48854	48933	75913	75913					0.0002860484057691792
RSEVQQFRNI	10	Unmodified	_RSEVQQFRNI_					0	0	0			REV__ENSG00000133243|ENST00000255608|BTBD2	REV__ENSG00000133243|ENST00000255608|BTBD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.77508544921875	3	426.230071	1275.66838	-0.18337	-7.8157E-05	4.0607	0.0017308	3.8773	0.0016526	426.2315581637863	42.316	0.65426	42.084	41.803	42.457	-0.23186					42	17	4	0	0	0	0.03519	1	3795	3795		15.333	0	1	253500	+		69700	23363	48855	48934	75914	75914					0.04157507543595784
RSEYRKRGF	9	Unmodified	_RSEYRKRGF_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.20733642578125	3	400.219506	1197.63669	0.54911	0.00021976	-0.011508	-4.6056E-06	0.5376	0.00021516	400.21951685645183	24.543	1.383	24.328	23.733	25.116	-0.2151					42	31	3	0	0	0	0.0245	1	1002	1002		22.58	0	1	76241			69701	3293	48856	48935	75915	75915					0.04577559580275192
RSFAACPLL	9	Unmodified	_RSFAACPLL_					0	0	0			REV__ENST00000466942.2_1_10:77161354-77161606:+|nuORF	REV__ENST00000466942.2_1_10:77161354-77161606:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.26556396484375	2	489.265487	976.516422	0.10189	4.9851E-05	-1.1023	-0.0005393	-1.0004	-0.00048945	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.53979	1	6113	6113		56.721	5.3856	1	81379000	+		69702	33053	48857	48936	75916	75916					0.02722435262307954
RSFALLPTW	9	Unmodified	_RSFALLPTW_					0	0	0		ENST00000308406.9_1_17:19285328-19285739:+|nuORF	ENST00000308406.9_1_17:19285328-19285739:+|nuORF	ENST00000308406.9_1_17:19285328-19285739:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.8040161132812	2	545.805834	1089.59712	-0.95595	-0.00052176	-3.4667	-0.0018921	-4.4226	-0.0024139	545.8037826783913	45.015	0.82416	45.059	44.722	45.546	0.04388					69	23	4	0	0	0	0.48817	1	4290	4290		60.118	0.18749	1	4477700			69703	12029	48858	48937	75917	75917					0.055900395768503586
RSFALLPTW	9	Unmodified	_RSFALLPTW_					0	0	0		ENST00000308406.9_1_17:19285328-19285739:+|nuORF	ENST00000308406.9_1_17:19285328-19285739:+|nuORF	ENST00000308406.9_1_17:19285328-19285739:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7825927734375	2	545.805834	1089.59712	-0.29088	-0.00015877	-0.14456	-7.8901E-05	-0.43544	-0.00023767	546.3068504825568	75.984	0.34125	75.726	75.557	75.898	-0.25866					14	8	2	0	0	0	0.024541	1	8984	8984		10.866	0	1	74009			69704	12029	48858	48937	75918	75918					0.055900395768503586
RSFCSAMVE	9	Unmodified	_RSFCSAMVE_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;ENSG00000164418|ENST00000369134|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2879028320312	2	515.228245	1028.44194	-0.20811	-0.00010723	-1.4812	-0.00076314	-1.6893	-0.00087037	515.2273901901633	34.116	0.69647	33.909	33.587	34.284	-0.20696					41	17	3	0	0	0	0.024427	1	2530	2530		42.396	3.59	1	970480			69705	7277	48859	48938	75919	75919					-0.07114695611380739
RSFENKLKSD	10	Unmodified	_RSFENKLKSD_					0	0	0		ENST00000329276.9_1_20:2637431-2637524:+|nuORF	ENST00000329276.9_1_20:2637431-2637524:+|nuORF	ENST00000329276.9_1_20:2637431-2637524:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.1828308105469	3	408.55081	1222.6306	-0.31704	-0.00012953	1.5591	0.00063697	1.2421	0.00050744	408.5519035466486	25.618	0.82911	25.392	25.061	25.89	-0.22683					47	19	3	0	0	0	0.03519	1	1193	1193		20.03	5.3368	1	195940			69706	12317	48860	48939	75920	75920					0.028189965580850185
RSFERRLKL	9	Unmodified	_RSFERRLKL_					0	0	0			REV__ENSG00000135999|ENST00000258484|EPC2	REV__ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	403.2069396972656	3	402.247285	1203.72002	-0.43783	-0.00017612	0.60238	0.00024231	0.16455	6.6191E-05	402.2475577240534	35.26	0.54049	35.239	35.049	35.589	-0.021767					16	13	2	0	0	0	0.024523	1	2669	2669		22.58	11.993	1	81306	+		69707	23609	48861	48940	75921	75921					0.1263129602814388
RSFEVIIL	8	Unmodified	_RSFEVIIL_					0	0	0		ENST00000515072.1_1_4:10454400-10456238:-|nuORF	ENST00000515072.1_1_4:10454400-10456238:-|nuORF	ENST00000515072.1_1_4:10454400-10456238:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2301025390625	2	488.794935	975.575317	-0.20011	-9.7811E-05	2.3354	0.0011415	2.1353	0.0010437	488.7963928269723	31.681	0.5147	31.529	31.269	31.783	-0.15231					19	12	2	0	0	0	0.027866	1	2082	2082		20.482	0	1	137590			69708	15893	48862	48941	75922	75922					0.08655234828290759
RSFFASLL	8	Unmodified	_RSFFASLL_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.7631530761719	2	470.766178	939.517802	-0.4818	-0.00022681	-3.8159	-0.0017964	-4.2977	-0.0020232	470.7642810208321	35.805	0.6688	35.6	35.387	36.056	-0.20518					39	18	3	0	0	0	0.5947	1	2765	2765		76.774	10.345	1	2877500	+		69709	20291	48863	48942	75923	75923					0.04562392622710831
RSFFASLLF	9	Unmodified	_RSFFASLLF_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2672119140625	2	544.300384	1086.58622	-0.99118	-0.0005395	-0.44177	-0.00024046	-1.4329	-0.00077995	544.3002074611159	35.985	0.13383	35.779	35.718	35.852	-0.20518					6	3	2	0	0	0	0.024319	1	2771	2771		56.721	10.749	1	172060	+		69710	20291	48864	48943	75924	75924					0.04638637202560858
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.20904541015625	3	412.208718	1233.60433	-0.15569	-6.4178E-05	0.60828	0.00025074	0.45259	0.00018656	412.20887647841175	41.149	0.85062	40.921	40.544	41.395	-0.2278					49	21	3	0	0	0	0.73558	1	3600	3600		43.651	2.5707	1	1399200			69711	18661	48865	48944	75925	75925					-0.0031322782269853633
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	412.208718	1233.60433	-0.36067	-0.00014867	0.82956	0.00034195	0.46889	0.00019328	412.208984564301	40.878	0.91826	40.742	40.454	41.372	-0.13554	-0.13995	-1.739E-05	NaN	43.651	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525700			69712	18661	48865	48944							-0.0031322782269853633
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379|BAG6;nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF	nc|ENSG00000204463|P46379|BAG6	nc|ENSG00000204463|P46379|BAG6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	412.208718	1233.60433	-0.67373	-0.00027772	1.036	0.00042703	0.36223	0.00014932	412.2090584825498	41.214	0.95518	40.984	40.659	41.614	-0.23029	0.10162	0.00023786	NaN	43.651	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1496300			69713	18661	48865	48944							-0.0031322782269853633
RSFGLNNL	8	Unmodified	_RSFGLNNL_					0	0	0			REV__nc|ENSG00000146826|Q8WVR3-2|TRAPPC14	REV__nc|ENSG00000146826|Q8WVR3-2|TRAPPC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	460.22216796875	2	460.751059	919.487565	-0.54408	-0.00025069	0.64005	0.00029491	0.095972	4.4219E-05	460.7513637960855	43.152	0.7234	42.926	42.374	43.097	-0.22597					30	18	2	0	0	0	0.027866	1	3874	3874		42.474	25.109	1	392860	+		69714	24511	48866	48945	75926	75926					0.024600339575158614
RSFHEVREF	9	Unmodified	_RSFHEVREF_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.87200927734375	3	402.871995	1205.59415	0.38187	0.00015384	-0.36174	-0.00014574	0.020125	8.108E-06	402.87184080090964	33.096	1.0467	32.865	32.586	33.633	-0.23107					84	25	5	0	0	0	0.17273	4	2339	2316;2327;2339;2352		94.409	34.478	1	5911300			69715	5673	48867	48946	75927;75928;75929;75930	75929					-0.0004183554794963129
RSFHEVREF	9	Unmodified	_RSFHEVREF_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.8720703125	3	402.871995	1205.59415	0.78784	0.0003174	-0.70759	-0.00028507	0.080243	3.2328E-05	402.87169861893244	33.235	1.0658	33.035	32.609	33.675	-0.20019					77	26	5	0	0	0	0.43384	3	2357	2332;2343;2357		63.694	20.043	1	7487400			69716	5673	48867	48946	75931;75932;75933	75933					-0.0004183554794963129
RSFHEVREF	9	Unmodified	_RSFHEVREF_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.87200927734375	3	402.871995	1205.59415	-0.87903	-0.00035414	0.77212	0.00031106	-0.10692	-4.3074E-05	402.87229762098224	33.005	1.1952	32.839	32.556	33.752	-0.16565					93	29	5	0	0	0	0.38482	3	2301	2291;2301;2314		66.92	15.392	1	6353600			69717	5673	48867	48946	75934;75935;75936	75935					-0.0004183554794963129
RSFHNAPPL	9	Unmodified	_RSFHNAPPL_					0	0	0		ENSG00000206107|ENST00000382835|KRTAP27-1	ENSG00000206107|ENST00000382835|KRTAP27-1	ENSG00000206107|ENST00000382835|KRTAP27-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7836303710938	2	519.777608	1037.54066	-0.72104	-0.00037478	2.2954	0.0011931	1.5743	0.00081831	520.2801232590739	34.153	0.43875	34.153	33.932	34.371	0					18	10	2	0	0	0	0.024495	1	2535	2535		26.693	0	1	147120			69718	10462	48868	48947	75937	75937					0.023394117401721815
RSFLDAYHKI	10	Unmodified	_RSFLDAYHKI_					0	0	0		ENST00000260184.11_1_4:169383028-169383106:-|nuORF	ENST00000260184.11_1_4:169383028-169383106:-|nuORF	ENST00000260184.11_1_4:169383028-169383106:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315368652344	3	417.227779	1248.66151	0.18476	7.7089E-05	-0.093936	-3.9193E-05	0.090828	3.7896E-05	417.2278276043718	21.315	0.47976	21.137	20.918	21.397	-0.17721					23	9	4	0	0	0	0.03519	1	646	646		23.378	0	1	79252			69719	11443	48869	48948	75938	75938					0.04712194662965885
RSFLKSVL	8	Unmodified	_RSFLKSVL_					0	0	0		ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2012939453125	2	475.295102	948.575651	-0.11344	-5.3918E-05	0.25619	0.00012177	0.14275	6.7849E-05	475.29511226422454	40.381	0.33096	40.156	39.928	40.259	-0.225					14	8	2	0	0	0	0.027866	1	3481	3481		21.96	0	1	198580			69720	7563	48870	48949	75939	75939					0.09930654548145412
RSFLLEVLL	9	Unmodified	_RSFLLEVLL_					0	0	0			REV__nc|ENSG00000135424|Q13683-9|ITGA7	REV__nc|ENSG00000135424|Q13683-9|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7952270507812	2	545.336967	1088.65938	-0.3143	-0.0001714	0.093885	5.1199E-05	-0.22041	-0.0001202	545.3367439691834	55.062	0.30785	55.062	54.908	55.216	0					13	8	2	0	0	0	0.023007	1	6077	6077		76.774	5.4784	1	82084	+		69721	23542	48871	48950	75940	75940					0.11859765925191823
RSFLYAMKSQV	11	Unmodified	_RSFLYAMKSQV_					0	0	0			REV__ENST00000443317.1_1_20:32801869-32802238:-|nuORF	REV__ENST00000443317.1_1_20:32801869-32802238:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.26629638671875	3	443.904307	1328.69109	-0.27087	-0.00012024	3.1978	0.0014195	2.9269	0.0012993	443.90571536186366	26.11	0.58452	26.087	25.82	26.405	-0.023087					32	13	3	0	0	0	0.02473	1	1330	1330		26.75	0	1	204320	+		69722	32577	48872	48951	75941	75941					0.03989390616811761
RSFNGLLTMY	10	Unmodified	_RSFNGLLTMY_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.2880859375	2	601.305341	1200.59613	-0.27278	-0.00016403	0.80154	0.00048197	0.52876	0.00031794	601.3053424456272	69.399	0.78344	69.149	68.866	69.649	-0.25063					35	18	3	0	0	0	0.75813	1	8057	8057		51.193	3.5354	1	1074200			69723	9931	48873	48952	75942	75942					0.003854571456258782
RSFPGFQAF	9	Unmodified	_RSFPGFQAF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7661743164062	2	528.766709	1055.51886	-0.36441	-0.00019269	1.2696	0.00067134	0.90522	0.00047865	528.7667974836498	65.885	1.212	65.643	65.126	66.338	-0.24144					105	29	5	0	0	0	0.40693	1	7523	7523		65.465	8.0127	1	1834900			69724	8200	48874	48953	75943	75943					-0.006673930083934465
RSFPGFQAF	9	Unmodified	_RSFPGFQAF_					0	0	0		nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.766845703125	2	528.766709	1055.51886	-0.43701	-0.00023108	1.4541	0.0007689	1.0171	0.00053782	528.7668999127424	65.859	1.2006	65.608	65.108	66.309	-0.25112					99	29	5	0	0	0	0.64897	2	7517	7517;7531		49.536	10.73	1	1970800			69725	8200	48874	48953	75944;75945	75944					-0.006673930083934465
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7667236328125	2	535.766906	1069.51926	-0.66131	-0.00035431	0.15371	8.2353E-05	-0.5076	-0.00027195	535.7668581103388	30.427	1.7055	30.183	29.737	31.443	-0.24415					130	41	5	0	0	0	0.32064	2	1931	1931;1944		72.879	10.772	1	3884100			69726	1762;17640;17642;17639;17641	48875	48954	75946;75947	75946					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7667236328125	2	535.766906	1069.51926	-1.1028	-0.00059084	0.53523	0.00028676	-0.56757	-0.00030408	535.76707367268	30.339	1.9122	30.161	29.194	31.106	-0.17818					120	45	4	0	0	0	0.22902	3	1901	1901;1948;1961		85.161	8.3142	1	3379500			69727	1762;17640;17642;17639;17641	48875	48954	75948;75949;75950	75948					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7667236328125	2	535.766906	1069.51926	-0.65831	-0.0003527	0.13339	7.1463E-05	-0.52492	-0.00028123	535.7668438126454	30.316	1.3717	30.167	29.792	31.164	-0.14952					111	32	5	0	0	0	0.30449	4	1943	1884;1932;1943;1955		75.043	11.737	1	3364100			69728	1762;17640;17642;17639;17641	48875	48954	75951;75952;75953;75954	75953					-0.012720180791802704
RSFPGSKEY	9	Unmodified	_RSFPGSKEY_					0	0	0		FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.I1343Yfs*2|1|0.19|ENSG00000083857|chr4:186636181-186636182|-/A|frameshift_variant;FAT1|p.Q1494Afs*4|1|0.2|ENSG00000083857|chr4:186628608-186628609|-/A|frameshift_variant;FAT1|p.K1445Qfs*7|1|0.24|ENSG00000083857|chr4:186628755-186628756|-/A|frameshift_variant;FAT1-MTNR1A|1|fusion;FAT1|p.N1330Kfs*38|1|0.67|ENSG00000083857|chr4:186636218-186636218|A/-|frameshift_variant;FAT1|p.E1344*|1|0.35|ENSG00000083857|chr4:186636178-186636179|-/A|frameshift_variant;FAT1|p.K1225Qfs*13|1|0.2|ENSG00000083857|chr4:186636884-186636885|-/G|frameshift_variant;FAT1|p.T944Nfs*12|1|0.41|ENSG00000083857|chr4:186706999-186707000|-/C|frameshift_variant;FAT1|p.D866Tfs*8|1|0.4|ENSG00000083857|chr4:186707232-186707232|C/-|frameshift_variant;FAT1|p.R548Tfs*16|1|0.35|ENSG00000083857|chr4:186708187-186708188|-/TA|frameshift_variant;FAT1|p.Y468Sfs*4|1|0.22|ENSG00000083857|chr4:186708422-186708426|TTGTA/-|frameshift_variant;FAT1|p.V482Sfs*2|1|0.48|ENSG00000083857|chr4:186708384-186708384|C/-|frameshift_variant;FAT1|p.S396Ffs*8|1|0.25|ENSG00000083857|chr4:186708641-186708642|-/A|frameshift_variant;FAT1|p.K751Sfs*14|1|0.76|ENSG00000083857|chr4:186707572-186707578|CAGTTTT/-|frameshift_variant;FAT1|p.L777Ffs*5|1|0.3|ENSG00000083857|chr4:186707497-186707498|-/A|frameshift_variant;FAT1|p.S377Kfs*2|1|0.43|ENSG00000083857|chr4:186708698-186708699|-/T|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant;FAT1|p.T1364Yfs*8|1|0.24|ENSG00000083857|chr4:186636118-186636119|-/A|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	535.766906	1069.51926	-1.699	-0.00091025	-6.0833	-0.0032592	-7.7823	-0.0041695	535.7640180390845	29.896	0.24921	29.974	29.842	30.091	0.078344	-0.1471	-0.0067653	NaN	75.043	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19688			69729	1762;17640;17642;17639;17641	48875	48954							-0.012720180791802704
RSFPTPKQK	9	Unmodified	_RSFPTPKQK_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-5|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-5|CC2D2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2990112304688	2	544.81419	1087.61383	-0.76485	-0.0004167	0.28048	0.00015281	-0.48437	-0.00026389	544.8144212600001	53.928	0.60439	53.73	53.456	54.06	-0.19739					26	18	2	0	0	0	0.024374	1	5653	5653		32.812	0	1	259110	+		69730	36452	48876	48955	75955	75955					0.07352540462807156
RSFRCQGAES	10	Unmodified	_RSFRCQGAES_					0	0	0			REV__nc|ENSG00000167705|Q96NA2-2|RILP	REV__nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7838134765625	2	570.764372	1139.51419	-0.041538	-2.3709E-05	-0.4668	-0.00026644	-0.50834	-0.00029014	570.7641643197205	24.973	0.35056	24.798	24.643	24.993	-0.17484					13	7	2	0	0	0	0.03519	1	1128	1128		39.253	0	1	60261	+		69731	26184	48877	48956	75956	75956					-0.049986452134589854
RSFRNSSSF	9	Unmodified	_RSFRNSSSF_					0	0	0		nc|ENSG00000171466|Q6V9R5-2|ZNF562;ENSG00000171466|ENST00000453372|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.2672119140625	2	544.267604	1086.52066	-0.93019	-0.00050627	0.45214	0.00024608	-0.47805	-0.00026018	544.2678957380646	35.941	2.7271	35.736	35.186	37.913	-0.20518					199	72	5	0	0	0	0.2508	4	2748	2748;2783;2820;2832		82.241	13.24	1	54405000			69732	8153	48878	48957	75957;75958;75959;75960	75957					-0.019143839904245397
RSFRNSSSF	9	Unmodified	_RSFRNSSSF_					0	0	0		nc|ENSG00000171466|Q6V9R5-2|ZNF562;ENSG00000171466|ENST00000453372|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.267333984375	2	544.267604	1086.52066	-0.25026	-0.00013621	-0.30822	-0.00016776	-0.55849	-0.00030397	544.2674991425346	35.901	2.7528	35.684	35.15	37.903	-0.21661					212	72	5	0	0	0	0.17822	5	2829	2736;2770;2782;2806;2829		93.195	10.925	1	66783000			69733	8153	48878	48957	75961;75962;75963;75964;75965	75965					-0.019143839904245397
RSFRNSSSF	9	Unmodified	_RSFRNSSSF_					0	0	0		nc|ENSG00000171466|Q6V9R5-2|ZNF562;ENSG00000171466|ENST00000453372|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.266845703125	2	544.267604	1086.52066	-0.31654	-0.00017228	-0.28629	-0.00015582	-0.60282	-0.0003281	544.2675216665498	35.757	3.1662	35.558	34.937	38.103	-0.19829					255	84	6	0	0	0	0.17822	3	2703	2703;2800;2838		93.195	5.3856	1	110170000			69734	8153	48878	48957	75966;75967;75968	75966					-0.019143839904245397
RSFRNSSSF	9	Unmodified	_RSFRNSSSF_					0	0	0		nc|ENSG00000171466|Q6V9R5-2|ZNF562;ENSG00000171466|ENST00000453372|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	nc|ENSG00000171466|Q6V9R5-2|ZNF562	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	544.267604	1086.52066	-1.686	-0.00091764	2.9883	0.0016264	1.3023	0.00070881	544.269398267265	35.403	0.58707	35.381	35.122	35.709	-0.021767	-0.20889	0.0031719	NaN	93.195	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68361			69735	8153	48878	48957							-0.019143839904245397
RSFSLRRL	8	Unmodified	_RSFSLRRL_					0	0	0		ENST00000375344.7_1_9:97136898-97137102:+|nuORF	ENST00000375344.7_1_9:97136898-97137102:+|nuORF	ENST00000375344.7_1_9:97136898-97137102:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7928466796875	2	517.814525	1033.6145	-0.71368	-0.00036955	2.932	0.0015182	2.2183	0.0011487	517.8158882574916	64.503	0.53002	64.24	64.083	64.613	-0.2626					30	13	3	0	0	0	0.027866	1	7555	7555		42.396	5.237	1	3038400			69736	13157	48879	48958	75969	75969					0.09903379902516463
RSFSSDRSY	9	Unmodified	_RSFSSDRSY_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.7559204101562	2	552.757069	1103.49959	-0.30495	-0.00016856	0.33912	0.00018745	0.034172	1.8889E-05	552.7571685623055	26.664	0.69805	26.496	26.153	26.851	-0.16816					43	16	4	0	0	0	0.34489	1	1404	1404		69.628	23.655	1	695100			69737	6183;18381	48880	48959	75970	75970					-0.04802394089938389
RSFSSDRSY	9	Unmodified	_RSFSSDRSY_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.75390625	2	552.757069	1103.49959	-0.82243	-0.0004546	0.64827	0.00035834	-0.17416	-9.6266E-05	552.7572675516302	26.636	0.80169	26.473	26.165	26.967	-0.16331					45	19	4	0	0	0	0.30449	1	1381	1381		75.043	18.322	1	869810			69738	6183;18381	48880	48959	75971	75971					-0.04802394089938389
RSFTAEITI	9	Unmodified	_RSFTAEITI_					0	0	0		ENST00000436565.2_1_13:77559420-77559855:+|nuORF	ENST00000436565.2_1_13:77559420-77559855:+|nuORF	ENST00000436565.2_1_13:77559420-77559855:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2559204101562	2	519.284931	1036.55531	0.44429	0.00023071	-0.2647	-0.00013746	0.17959	9.3257E-05	519.2846597287999	50.697	0.48018	50.516	50.317	50.797	-0.18071					31	12	3	0	0	0	0.024405	1	5136	5136		14.865	0	1	1302000			69739	14279	48881	48960	75972	75972					0.03849439097666618
RSFVLLSGW	9	Unmodified	_RSFVLLSGW_					0	0	0			REV__nc|ENSG00000133106|Q96J88-3|EPSTI1	REV__nc|ENSG00000133106|Q96J88-3|EPSTI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.293212890625	2	532.798009	1063.58147	-0.88691	-0.00047254	1.7943	0.000956	0.9074	0.00048346	532.7982595080308	65.178	1.4549	65.178	64.69	66.145	0					64	39	3	0	0	0	0.024427	1	7695	7695		26.693	9.9755	1	1149500	+		69740	36667	48882	48961	75973	75973					0.05221753059822731
RSFWDMTC	8	Unmodified	_RSFWDMTC_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2579956054688	2	523.215137	1044.41572	-1.1126	-0.00058214	-3.4733	-0.0018173	-4.586	-0.0023994	523.2138746606431	24.069	0.35039	24.022	23.826	24.177	-0.047148					11	7	2	0	0	0	0.027866	1	1021	1021		7.1934	0	1	39174	+		69741	22782	48883	48962	75974	75974					-0.10470964782848569
RSGALRSAR	9	Unmodified	_RSGALRSAR_					0	0	0		ENST00000323374.8_2_17:74380737-74381645:+|nuORF	ENST00000323374.8_2_17:74380737-74381645:+|nuORF	ENST00000323374.8_2_17:74380737-74381645:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7568664550781	2	487.286131	972.55771	-0.90139	-0.00043923	3.6135	0.0017608	2.7121	0.0013216	487.2878283822812	37.28	0.46465	37.061	36.807	37.271	-0.2195					26	11	3	0	0	0	0.024261	1	2995	2995		45.972	0	1	1229800			69742	12238	48884	48963	75975	75975					0.0703333234598631
RSGAVLTTF	9	Unmodified	_RSGAVLTTF_					0	0	0			REV__nc|ENSG00000111319|P37088-3|SCNN1A	REV__nc|ENSG00000111319|P37088-3|SCNN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2666320800781	2	476.266542	950.51853	-0.41395	-0.00019715	-0.25686	-0.00012233	-0.6708	-0.00031948	476.2664642284955	31.629	1.4048	31.476	31.124	32.529	-0.15231					112	34	5	0	0	0	0.17822	1	2081	2081		93.195	2.8256	1	24194000	+		69743	21908	48885	48964	75976	75976					0.041291872717465594
RSGDDLCPH	9	Unmodified	_RSGDDLCPH_					0	0	0			REV__CON__A2VCT4	REV__CON__A2VCT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7868957519531	2	500.219266	998.423978	-1.1597	-0.00058012	1.4165	0.00070856	0.25677	0.00012844	500.21925142840223	60.951	0.54862	60.698	60.463	61.012	-0.25373					23	13	3	0	0	0	0.024511	1	6753	6753		32.812	14.488	1	111100	+	+	69744	19521	48886	48965	75977	75977					-0.07529694541892695
RSGDSDQTD	9	Unmodified	_RSGDSDQTD_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.75579833984375	2	490.699417	979.384281	-0.11697	-5.7396E-05	-2.2616	-0.0011097	-2.3785	-0.0011671	490.6981411527287	43.552	0.21472	43.583	43.522	43.737	0.030827					6	5	2	0	0	0	0.024506	1	4048	4048		10.866	0	1	174660			69745	3475	48887	48966	75978	75978					-0.10623543011604397
RSGEISGDI	9	Unmodified	_RSGEISGDI_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.607421875	2	467.235439	932.456324	0.087826	4.1035E-05	2.779	0.0012984	2.8668	0.0013395	467.23660985991825	100.42	0.48041	100.43	100.13	100.61	0.010109					20	11	2	0	0	0	0.02435	1	12822	12822		34.173	30.763	1	147410	+		69746	28499	48888	48967	75979	75979					-0.012605838672243408
RSGFPRDKL	9	Unmodified	_RSGFPRDKL_					0	0	0		ENST00000595670.5_1_19:4175837-4182530:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF;nc|ENSG00000077463|Q8N6T7-2|SIRT6;ENSG00000077463|ENST00000337491|SIRT6	ENST00000595670.5_1_19:4175837-4182530:-|nuORF	ENST00000595670.5_1_19:4175837-4182530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7540283203125	2	538.30399	1074.59343	-0.8845	-0.00047613	-0.041419	-2.2296E-05	-0.92592	-0.00049843	538.3041210254978	25.561	0.32807	25.334	25.148	25.476	-0.22683					11	7	2	0	0	0	0.024457	1	1235	1235		45.952	0	1	101560			69747	1613	48889	48968	75980	75980					0.05911369802970512
RSGGLLQLW	9	Unmodified	_RSGGLLQLW_					0	0	0		PHLDA3|p.K27N|1|0.2|ENSG00000174307|chr1:201468706-201468706|C/G|missense_variant;ENSG00000174307|ENST00000367311|PHLDA3	PHLDA3|p.K27N|1|0.2|ENSG00000174307|chr1:201468706-201468706|C/G|missense_variant	PHLDA3|p.K27N|1|0.2|ENSG00000174307|chr1:201468706-201468706|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2957153320312	2	515.295633	1028.57671	-0.26719	-0.00013768	-0.4123	-0.00021246	-0.67949	-0.00035014	515.2956267735008	73.368	0.83951	73.178	72.844	73.683	-0.19026					74	20	5	0	0	0	0.16638	1	8651	8651		95.815	2.6719	1	13528000			69748	8459	48890	48969	75981	75981					0.06356868917032443
RSGGRRRADP	10	Unmodified	_RSGGRRRADP_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000539357.1_1_12:133257669-133263919:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.756591796875	2	564.310669	1126.60679	-0.021508	-1.2137E-05	-1.8367	-0.0010365	-1.8582	-0.0010486	564.309415587685	64.337	0.44048	64.337	64.097	64.538	0					15	11	2	0	0	0	0.03519	1	7563	7563		30.318	0	1	329290			69749	8705	48891	48970	75982	75982					0.04854620634955609
RSGHFEQAI	9	Unmodified	_RSGHFEQAI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7646484375	2	522.764697	1043.51484	-1.7551	-0.0009175	1.0904	0.00057002	-0.6647	-0.00034748	522.7652668598829	30.337	0.90276	30.337	30.017	30.92	0					45	21	4	0	0	0	0.46427	1	1934	1934		61.691	3.88	1	1696400			69750	3431	48892	48971	75983	75983					-0.005174825021185825
RSGHFEQAI	9	Unmodified	_RSGHFEQAI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7645263671875	2	522.764697	1043.51484	-0.729	-0.0003811	0.13108	6.8525E-05	-0.59792	-0.00031257	522.7647854021774	30.278	0.82549	30.287	30.002	30.828	0.0086708					45	19	4	0	0	0	0.49102	2	1928	1917;1928		59.931	10.395	1	1720700			69751	3431	48892	48971	75984;75985	75985					-0.005174825021185825
RSGHYTAY	8	Unmodified	_RSGHYTAY_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-4|USP16;ENST00000485067.1_1_21:30426080-30426505:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.73150634765625	2	477.725041	953.435529	0.46802	0.00022359	-0.70884	-0.00033863	-0.24082	-0.00011504	477.72452854059134	24.015	0.35482	23.8	23.599	23.954	-0.2151					13	7	2	0	0	0	0.027866	1	1010	1010		30.504	11.144	1	50665			69752	6518	48893	48972	75986	75986					-0.04305129456247414
RSGIQLHLLL	10	Unmodified	_RSGIQLHLLL_					0	0	0			REV__ENST00000299084.8_1_15:38545205-38545376:+|nuORF	REV__ENST00000299084.8_1_15:38545205-38545376:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	574.8189086914062	2	575.358765	1148.70298	0.2262	0.00013015	3.81	0.0021921	4.0362	0.0023223	575.3606820027694	68.449	0.85639	68.156	67.896	68.753	-0.29267					38	21	2	0	0	0	0.03519	1	8185	8185		47.657	5.2612	1	153140	+		69753	30029	48894	48973	75987	75987					0.13457375422331097
RSGIQLHLLL	10	Unmodified	_RSGIQLHLLL_					0	0	0			REV__ENST00000299084.8_1_15:38545205-38545376:+|nuORF	REV__ENST00000299084.8_1_15:38545205-38545376:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.8187866210938	2	575.358765	1148.70298	0.16228	9.3368E-05	4.3678	0.002513	4.5301	0.0026064	575.3610829456728	68.196	0.76093	67.966	67.637	68.398	-0.23048					39	18	3	0	0	0	0.03519	1	7915	7915		34.173	7.4796	1	144690	+		69754	30029	48894	48973	75988	75988					0.13457375422331097
RSGKIPPKL	9	Unmodified	_RSGKIPPKL_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.3215637207031	2	498.321651	994.62875	-0.42156	-0.00021007	0.20662	0.00010296	-0.21495	-0.00010711	498.3215976170792	48.702	1.5512	48.769	47.87	49.421	0.066795					117	42	4	0	0	0	0.23085	1	4904	4904		84.916	16.129	1	2777600			69755	3953	48895	48974	75989	75989					0.1312203233078435
RSGKIPRSA	9	Unmodified	_RSGKIPRSA_					0	0	0		ENSG00000111058|ENST00000548058|ACSS3;nc|ENSG00000111058|Q9H6R3-2|ACSS3	ENSG00000111058|ENST00000548058|ACSS3	ENSG00000111058|ENST00000548058|ACSS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.29022216796875	2	486.290882	970.567212	-1.2589	-0.00061219	-0.024018	-1.1679E-05	-1.2829	-0.00062387	486.2909805729049	27.4	2.2661	27.481	27.064	29.33	0.081293					128	57	5	0	0	0	0.77768	1	1438	1438		40.778	0	1	43649000			69756	3085	48896	48975	75990	75990					0.08075100631504029
RSGKKVFR	8	Unmodified	_RSGKKVFR_					0	0	0		ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2926025390625	2	489.303793	976.593033	-0.31453	-0.0001539	3.1045	0.0015191	2.79	0.0013652	489.30517024500165	61.139	0.6709	60.926	60.567	61.238	-0.21339					26	17	2	0	0	0	0.027866	1	6974	6974		40.573	6.4001	1	144470			69757	3539	48897	48976	75991	75991					0.10379994873801479
RSGKRGRPS	9	Unmodified	_RSGKRGRPS_					0	0	0		nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.3088684082031	2	500.791581	999.568609	-0.49435	-0.00024756	3.0194	0.0015121	2.5251	0.0012645	500.79287704971836	32.151	0.59378	32.163	31.782	32.376	0.011799					23	14	2	0	0	0	0.024261	1	2175	2175		64.207	11.271	1	933730			69758	9080	48898	48977	75992	75992					0.06880734720277815
RSGKVRHS	8	Unmodified	_RSGKVRHS_					0	0	0			REV__LRFN1|p.R568H|1|0.14|ENSG00000128011|chr19:39308246-39308246|C/T|missense_variant	REV__LRFN1|p.R568H|1|0.14|ENSG00000128011|chr19:39308246-39308246|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7794494628906	2	463.767575	925.520596	0.1318	6.1124E-05	2.726	0.0012642	2.8578	0.0013253	463.76888088826024	67.915	0.59384	67.627	67.268	67.861	-0.28834					21	14	2	0	0	0	0.027866	1	8103	8103		14.865	0	1	149020	+		69759	36320	48899	48978	75993	75993					0.054856608002296525
RSGLDLAPL	9	Unmodified	_RSGLDLAPL_					0	0	0		ENST00000392627.5_1_17:72443273-72443525:+|nuORF	ENST00000392627.5_1_17:72443273-72443525:+|nuORF	ENST00000392627.5_1_17:72443273-72443525:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2563781738281	2	471.274367	940.53418	-0.70181	-0.00033074	-3.928	-0.0018512	-4.6298	-0.0021819	471.2743542116638	44.746	0.50884	44.597	44.322	44.83	-0.1488					27	14	3	0	0	0	0.024457	1	4277	4277		37.159	9.2769	1	259030			69760	13423	48900	48979	75994	75994					0.061534737887996016
RSGLFDMH	8	Unmodified	_RSGLFDMH_					0	0	0			REV__ENST00000559143.1_1_15:89453268-89453466:-|nuORF	REV__ENST00000559143.1_1_15:89453268-89453466:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.3033447265625	2	481.729269	961.443985	-0.2004	-9.654E-05	-0.57456	-0.00027678	-0.77496	-0.00037332	481.7288166533513	73.571	0.57083	73.299	72.967	73.538	-0.27126					32	14	3	0	0	0	0.027866	1	8950	8950		25.45	3.7478	1	780870	+		69761	35113	48901	48980	75995	75995					-0.0382789881126655
RSGLGGAPLGL	11	Unmodified	_RSGLGGAPLGL_					0	0	0		nc|ENSG00000186318|P56817-4|BACE1;nc|ENSG00000186318|P56817-3|BACE1;nc|ENSG00000186318|P56817-2|BACE1;ENSG00000186318|ENST00000313005|BACE1	nc|ENSG00000186318|P56817-4|BACE1	nc|ENSG00000186318|P56817-4|BACE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2889099121094	2	499.293091	996.571629	-0.21001	-0.00010486	1.7718	0.00088463	1.5618	0.00077977	499.2942108769967	49.381	0.7648	49.228	48.829	49.594	-0.15276					46	20	4	0	0	0	0.024753	1	5072	5072		46.457	3.5925	1	887820			69762	9539	48902	48981	75996	75996					0.07320565054419603
RSGLNMALF	9	Unmodified	_RSGLNMALF_					0	0	0			REV__ENST00000547487.5_1_12:56235002-56236716:-|nuORF	REV__ENST00000547487.5_1_12:56235002-56236716:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7665100097656	2	504.768394	1007.52224	-0.050177	-2.5328E-05	-3.9959	-0.002017	-4.0461	-0.0020423	504.7663967581138	63.685	1.8451	63.457	62.769	64.614	-0.22773					160	46	5	0	0	0	0.2101	2	7207	7171;7207		87.696	2.5356	1	35949000	+		69763	34866	48903	48982	75997;75998	75998					0.01877533773961204
RSGLNMALF	9	Unmodified	_RSGLNMALF_					0	0	0			REV__ENST00000547487.5_1_12:56235002-56236716:-|nuORF	REV__ENST00000547487.5_1_12:56235002-56236716:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.76678466796875	2	504.768394	1007.52224	-0.17127	-8.645E-05	-3.9123	-0.0019748	-4.0836	-0.0020613	504.7664533006264	66.203	1.5138	65.962	64.964	66.478	-0.24145					123	37	5	0	0	0	0.17822	1	7561	7561		93.195	10.955	1	22119000	+		69764	34866	48903	48982	75999	75999					0.01877533773961204
RSGLNMALF	9	Unmodified	_RSGLNMALF_					0	0	0			REV__ENST00000547487.5_1_12:56235002-56236716:-|nuORF	REV__ENST00000547487.5_1_12:56235002-56236716:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7666015625	2	504.768394	1007.52224	-0.64786	-0.00032702	-3.3762	-0.0017042	-4.0241	-0.0020312	504.7667143872429	66.219	1.2611	65.974	65.235	66.496	-0.24517					114	32	5	0	0	0	0.15366	2	7599	7599;7612		98.629	6.4121	1	19769000	+		69765	34866	48903	48982	76000;76001	76000					0.01877533773961204
RSGMCMRMSSQ	11	Unmodified	_RSGMCMRMSSQ_					0	0	0			REV__ENST00000468970.1_1_1:150804279-150808966:-|nuORF	REV__ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	637.2685546875	2	637.267052	1272.51955	-0.51072	-0.00032547	2.5769	0.0016421	2.0661	0.0013167	637.2689014444845	34.64	1.1994	34.433	34.12	35.319	-0.20696					82	29	5	0	0	0	0.7968	1	2559	2559		41.08	17.557	1	7192200	+		69766	24247	48904	48983	76002	76002					-0.10580749009159263
RSGMCMRMSSQ	11	Unmodified	_RSGMCMRMSSQ_					0	0	0			REV__ENST00000468970.1_1_1:150804279-150808966:-|nuORF	REV__ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	637.2687377929688	2	637.267052	1272.51955	-0.81878	-0.00052178	3.0052	0.0019151	2.1864	0.0013933	637.2690837353263	34.68	1.0236	34.494	34.158	35.182	-0.18524					70	25	4	0	0	0	0.58627	1	2559	2559		45.908	0	1	6509800	+		69767	24247	48904	48983	76003	76003					-0.10580749009159263
RSGMKNAR	8	Unmodified	_RSGMKNAR_					0	0	0		ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2709045410156	2	460.24816	918.481768	-0.54471	-0.0002507	0.88241	0.00040613	0.3377	0.00015543	460.2485115724072	43.536	0.4747	43.394	43.097	43.571	-0.1426					18	12	2	0	0	0	0.027866	1	4078	4078		3.41	0	1	96316			69768	6117	48905	48984	76004	76004					0.019266121742020914
RSGPEVMRVLT	11	Unmodified	_RSGPEVMRVLT_					0	0	0			REV__ENST00000567385.5_1_16:48265837-48278487:-|nuORF	REV__ENST00000567385.5_1_16:48265837-48278487:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.2348937988281	3	415.564173	1243.67069	0.21468	8.9215E-05	-2.8312	-0.0011766	-2.6166	-0.0010873	415.5628762678252	24.065	0.90039	24.065	23.441	24.341	0					16	11	2	0	0	0	0.024768	1	961	961		34.087	2.0524	1	142110	+		69769	35319	48906	48985	76005	76005					0.05860219957025947
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENSG00000176014|ENST00000317702|TUBB6	ENSG00000176014|ENST00000317702|TUBB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7670593261719	2	504.766709	1007.51886	-0.050178	-2.5328E-05	-0.65696	-0.00033161	-0.70714	-0.00035694	504.7663967581138	63.685	1.8451	63.457	62.769	64.614	-0.22773					160	46	5	0	0	0	0.16638	8	7195	7149;7183;7195;7219;7231;7243;7256;7270		95.815	0	1	35949000		+	69770	8603	48907	48986	76006;76007;76008;76009;76010;76011;76012;76013	76008					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENSG00000176014|ENST00000317702|TUBB6	ENSG00000176014|ENST00000317702|TUBB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.76678466796875	2	504.766709	1007.51886	-0.17127	-8.645E-05	-0.57336	-0.00028942	-0.74463	-0.00037587	504.7664533006264	66.203	1.5138	65.962	64.964	66.478	-0.24145					123	37	5	0	0	0	0.1158	4	7573	7537;7573;7585;7622		107.01	0	1	22119000		+	69771	8603	48907	48986	76014;76015;76016;76017	76015					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENSG00000176014|ENST00000317702|TUBB6	ENSG00000176014|ENST00000317702|TUBB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7672424316406	2	504.766709	1007.51886	-0.19713	-9.9504E-05	-0.50865	-0.00025675	-0.70578	-0.00035625	504.76647041137096	63.593	2.0499	63.4	62.738	64.788	-0.19243					167	51	5	0	0	0	0.14024	5	7222	7152;7186;7198;7222;7246		101.6	0	1	34087000		+	69772	8603	48907	48986	76018;76019;76020;76021;76022	76021					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENSG00000176014|ENST00000317702|TUBB6	ENSG00000176014|ENST00000317702|TUBB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7667236328125	2	504.766709	1007.51886	-0.76406	-0.00038567	-0.013426	-6.7768E-06	-0.77748	-0.00039245	504.7667349447106	66.188	1.6607	65.975	64.888	66.549	-0.21328					139	41	6	0	0	0	0.077175	7	7582	7535;7546;7582;7594;7606;7618;7634		118.74	0	1	21357000		+	69773	8603	48907	48986	76023;76024;76025;76026;76027;76028;76029	76025					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENSG00000176014|ENST00000317702|TUBB6	ENSG00000176014|ENST00000317702|TUBB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7660217285156	2	504.766709	1007.51886	0.069937	3.5302E-05	-0.82143	-0.00041463	-0.75149	-0.00037933	504.7663389447614	63.739	1.9018	63.481	62.835	64.736	-0.25824					157	48	5	0	0	0	0.086035	9	7233	7162;7173;7185;7197;7209;7221;7233;7245;7258		115.49	0	1	31738000		+	69774	8603	48907	48986	76030;76031;76032;76033;76034;76035;76036;76037;76038	76036					0.015406069916252818
RSGPFGQLF	9	Unmodified	_RSGPFGQLF_					0	0	0		ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENST00000587204.1_1_18:12308291-12311096:+|nuORF	ENSG00000176014|ENST00000317702|TUBB6	ENSG00000176014|ENST00000317702|TUBB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.767333984375	2	504.766709	1007.51886	-0.64786	-0.00032702	-0.03725	-1.8803E-05	-0.68511	-0.00034582	504.7667143872429	66.219	1.2611	65.974	65.235	66.496	-0.24517					114	32	5	0	0	0	0.15366	5	7551	7528;7551;7563;7575;7587		98.629	0	1	19769000		+	69775	8603	48907	48986	76039;76040;76041;76042;76043	76040					0.015406069916252818
RSGPLPGEV	9	Unmodified	_RSGPLPGEV_					0	0	0		ENSG00000187994|ENST00000591812|RINL;ENST00000596919.5_1_19:39362421-39364622:-|nuORF	ENSG00000187994|ENST00000591812|RINL	ENSG00000187994|ENST00000591812|RINL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.77801513671875	2	456.250892	910.48723	0.56147	0.00025617	0.21374	9.752E-05	0.77521	0.00035369	456.2506863085405	42.928	0.86911	42.959	42.398	43.267	0.030823					53	23	4	0	0	0	0.024374	1	3931	3931		40.778	0	1	2636600			69776	9680	48908	48987	76044	76044					0.02840614237675254
RSGPSPVL	8	Unmodified	_RSGPSPVL_					0	0	0		ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.8998107910156	2	406.734877	811.455202	0.59212	0.00024083	0.064007	2.6034E-05	0.65612	0.00026687	406.7341662615127	23.792	0.17715	23.59	23.48	23.657	-0.20193					5	3	2	0	0	0	0.027866	1	988	988		42.474	17.024	1	17036			69777	15085	48909	48988	76045	76045					0.04193246554507368
RSGRGLPRL	9	Unmodified	_RSGRGLPRL_					0	0	0			REV__ENST00000466642.5_2_2:64068188-64068329:+|nuORF	REV__ENST00000466642.5_2_2:64068188-64068329:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8237609863281	2	506.312149	1010.60975	0.42448	0.00021492	2.6705	0.0013521	3.095	0.001567	506.3132343613373	43.124	0.3664	43.155	43.046	43.413	0.030823					21	9	3	0	0	0	0.024389	1	3950	3950		60.118	42.753	1	282480	+		69778	33044	48910	48989	76046	76046					0.1048649575974423
RSGRHAGI	8	Unmodified	_RSGRHAGI_					0	0	0		ENST00000243776.10_1_2:220408117-220408489:-|nuORF	ENST00000243776.10_1_2:220408117-220408489:-|nuORF	ENST00000243776.10_1_2:220408117-220408489:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.1900939941406	2	427.241193	852.467832	1.5559	0.00066475	-3.5168	-0.0015025	-1.9609	-0.00083778	427.2414399440516	25.035	0.13088	24.863	24.777	24.907	-0.17151					4	2	2	0	0	0	0.027866	1	1117	1117		8.8223	2.0868	1	9972.9			69779	11296	48911	48990	76047	76047					0.03569702737411262
RSGRQPARRVV	11	Unmodified	_RSGRQPARRVV_					0	0	0			REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	REV__ENST00000565797.2_1_19:1875564-1875945:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.3846435546875	2	641.384168	1280.75378	-0.27889	-0.00017887	1.1579	0.00074263	0.87897	0.00056376	641.384701093394	101.52	0.72579	101.35	101.05	101.78	-0.17178					47	15	4	0	0	0	1.0624	1	12604	12604		21.686	0.73882	1	985230	+		69780	35287	48912	48991	76048	76048					0.12463717519858619
RSGRRPLFS	9	Unmodified	_RSGRRPLFS_					0	0	0			REV__ENST00000586407.1_1_17:33308010-33308172:+|nuORF	REV__ENST00000586407.1_1_17:33308010-33308172:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7540283203125	2	538.309606	1074.60466	0.31968	0.00017209	-2.1958	-0.001182	-1.8762	-0.00101	538.3080504970492	25.059	0.68057	24.887	24.643	25.324	-0.17151					30	15	3	0	0	0	0.024457	1	1173	1173		37.159	2.9866	1	374960	+		69781	35598	48913	48992	76049	76049					0.07034191897128039
RSGRRPLFS	9	Unmodified	_RSGRRPLFS_					0	0	0			REV__ENST00000586407.1_1_17:33308010-33308172:+|nuORF	REV__ENST00000586407.1_1_17:33308010-33308172:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.309606	1074.60466	-0.81044	-0.00043627	0.483	0.00026001	-0.32744	-0.00017626	538.30963350892	25.211	0.48153	24.984	24.708	25.19	-0.22683	0.10299	0.00033803	NaN	51.335	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309430	+		69782	35598	48913	48992							0.07034191897128039
RSGRRPLFS	9	Unmodified	_RSGRRPLFS_					0	0	0			REV__ENST00000586407.1_1_17:33308010-33308172:+|nuORF	REV__ENST00000586407.1_1_17:33308010-33308172:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.309606	1074.60466	-0.50841	-0.00027368	0.092902	5.001E-05	-0.41551	-0.00022367	538.3094965278872	24.947	0.43917	24.772	24.554	24.993	-0.17484	-0.10923	-8.1966E-05	NaN	51.335	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276220	+		69783	35598	48913	48992							0.07034191897128039
RSGSGLLL	8	Unmodified	_RSGSGLLL_					0	0	0		ENST00000476146.5_1_20:34043137-34046179:+|nuORF	REV__ENSG00000125430|ENST00000360954|HS3ST3B1	REV__ENSG00000125430|ENST00000360954|HS3ST3B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.9035339355469	2	401.742702	801.470852	0.26338	0.00010581	0.10101	4.058E-05	0.36439	0.00014639	401.74260537230066	30.899	0.46671	30.658	30.367	30.834	-0.24109					13	10	2	0	0	0	0.027866	1	1999	1999		23.042	0	1	150040			69784	22815	48914	48993	76050	76050					0.06217533071571779
RSGSIRALP	9	Unmodified	_RSGSIRALP_					0	0	0			REV__ENST00000519927.5_1_8:72443445-72460383:-|nuORF	REV__ENST00000519927.5_1_8:72443445-72460383:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7440185546875	2	478.785433	955.556313	-0.6937	-0.00033213	0.64162	0.0003072	-0.052075	-2.4933E-05	478.7856263664203	29.812	0.56998	29.812	29.487	30.057	0					24	13	2	0	0	0	0.024374	1	1875	1875		40.778	5.1599	1	420760	+		69785	34275	48915	48994	76051	76051					0.07675698257230579
RSGSLKGPD	9	Unmodified	_RSGSLKGPD_					0	0	0		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1;BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2841796875	2	458.745973	915.477394	-0.25811	-0.00011841	-4.1838	-0.0019193	-4.4419	-0.0020377	458.74408472911017	57.016	1.1772	56.851	56.023	57.2	-0.16431					55	32	2	0	0	0	0.0242	1	6280	6280		28.081	0	1	373820			69786	6227	48916	48995	76052	76052					0.016274262322895083
RSGSLKGPD	9	Unmodified	_RSGSLKGPD_					0	0	0		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1;BICD1|p.A718Qfs*3|1|0.28|ENSG00000151746|chr12:32334562-32334562|A/-|frameshift_variant	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2845153808594	2	458.745973	915.477394	0.015303	7.0202E-06	-3.9868	-0.0018289	-3.9715	-0.0018219	458.74404124996	56.47	1.1114	56.568	56.173	57.284	0.097893					61	30	3	0	0	0	0.024257	1	6188	6188		41.427	0	1	372560			69787	6227	48916	48995	76053	76053					0.016274262322895083
RSGSLPPLVI	10	Unmodified	_RSGSLPPLVI_					0	0	0		nc|ENSG00000135637|Q17RM4-3|CCDC142;nc|ENSG00000135637|Q17RM4-2|CCDC142;ENSG00000135637|ENST00000393965|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8189086914062	2	519.818941	1037.62333	0.39079	0.00020314	-0.95648	-0.0004972	-0.56569	-0.00029406	519.8185167136494	71.654	3.022	71.366	70.459	73.481	-0.28858					180	76	4	0	0	0	0.60198	1	8635	8635		76.774	7.9873	1	29892000			69788	4918	48917	48996	76054	76054					0.10602308748320866
RSGSPPTSSI	10	Unmodified	_RSGSPPTSSI_					0	0	0			REV__nc|ENSG00000204091|Q3Y452|TDRG1	REV__nc|ENSG00000204091|Q3Y452|TDRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7820739746094	2	494.756538	987.498523	-0.12066	-5.9697E-05	-1.5495	-0.0007666	-1.6701	-0.0008263	494.7563799997502	66.107	0.38495	66.137	65.812	66.197	0.030106					11	9	2	0	0	0	0.03519	1	7752	7752		23.523	0	1	121470	+		69789	37073	48918	48997	76055	76055					0.004273915411431517
RSGTPILKV	9	Unmodified	_RSGTPILKV_					0	0	0		ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2715759277344	2	485.805834	969.597115	-0.076009	-3.6926E-05	0.62006	0.00030123	0.54405	0.0002643	485.80555747523533	32.742	0.36472	32.577	32.355	32.72	-0.16565					10	8	2	0	0	0	0.024477	1	2277	2277		14.865	7.6715	1	134300			69790	4146	48919	48998	76056	76056					0.11110039576851705
RSGTRLLPV	9	Unmodified	_RSGTRLLPV_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8314514160156	2	499.808908	997.603263	-1.2826	-0.00064105	1.0024	0.00050102	-0.28016	-0.00014003	499.80947394233664	44.518	0.46289	44.373	44.099	44.561	-0.1447					35	13	3	0	0	0	0.024541	1	4247	4247		6.7355	0	1	525060	+		69791	27006	48920	48999	76057	76057					0.1043655780838435
RSGVKVVTF	9	Unmodified	_RSGVKVVTF_					0	0	0		C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	496.793212890625	2	496.798009	991.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.75	1	38.586	38.086	39.086	-0.16458								0	0	0	0.55222	1	3227	3227		45.972	1.4412	1				69792	196	48921	49000	76058	76058					0.08533753059805349
RSGVKVVTF	9	Unmodified	_RSGVKVVTF_					0	0	0		C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.79571533203125	2	496.798009	991.581465	-0.65047	-0.00032315	0.3726	0.00018511	-0.27787	-0.00013805	496.79774304360575	38.88	1.0205	38.657	38.052	39.073	-0.22311					57	27	4	0	0	0	0.51687	2	3259	3243;3259		58.23	3.2771	1	3917900			69793	196	48921	49000	76059;76060	76060					0.08533753059805349
RSGVKVVTF	9	Unmodified	_RSGVKVVTF_					0	0	0		C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant;ENSG00000159189|ENST00000374640|C1QC	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	C1QC|p.D234*|1|0.04|ENSG00000159189|chr1:22647743-22647744|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.79449462890625	2	496.798009	991.581465	-0.26157	-0.00012995	-0.24391	-0.00012117	-0.50549	-0.00025112	496.7974460635188	38.843	1.054	38.617	38.042	39.096	-0.2257					65	28	4	0	0	0	0.48817	2	3226	3226;3238		60.118	12.203	1	4181800			69794	196	48921	49000	76061;76062	76061					0.08533753059805349
RSGVPAQV	8	Unmodified	_RSGVPAQV_					0	0	0		ENST00000553407.5_1_12:121840574-121855729:+|nuORF;ENSG00000170633|ENST00000361234|RNF34;nc|ENSG00000170633|Q969K3-2|RNF34	ENST00000553407.5_1_12:121840574-121855729:+|nuORF	ENST00000553407.5_1_12:121840574-121855729:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	407.26861572265625	2	407.232502	812.450451	0.99246	0.00040416	-0.38629	-0.00015731	0.60617	0.00024685	407.2322117546412	27.935	1.1435	28.017	27.684	28.827	0.081293					61	27	3	0	0	0	0.027866	1	1614	1614		73.975	0	1	1047500			69795	8063	48922	49001	76063	76063					0.03672362411748509
RSHAGYQTI	9	Unmodified	_RSHAGYQTI_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113976589-113976733:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7647094726562	2	516.764697	1031.51484	-0.96933	-0.00050092	1.4993	0.00077481	0.53001	0.00027389	516.7656920039726	25.101	1.1644	25.101	24.919	26.083	0					54	27	3	0	0	0	0.11727	3	1158	1145;1158;1172		106.68	21.779	1	5358000			69796	9487	48923	49002	76064;76065;76066	76065					0.0003451749792020564
RSHAGYQTI	9	Unmodified	_RSHAGYQTI_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113976589-113976733:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.7651977539062	2	516.764697	1031.51484	-1.0748	-0.0005554	1.7242	0.000891	0.64943	0.0003356	516.7657932590912	25.135	1.2882	25.1	24.904	26.192	-0.034395					53	30	3	0	0	0	0.030064	2	1148	1148;1162		141.52	48.325	1	5685700			69797	9487	48923	49002	76067;76068	76067					0.0003451749792020564
RSHAGYQTI	9	Unmodified	_RSHAGYQTI_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113976589-113976733:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.7648315429688	2	516.764697	1031.51484	-0.28252	-0.000146	0.61395	0.00031727	0.33143	0.00017127	516.7651613158827	24.992	1.0926	25.07	24.914	26.007	0.078363					57	25	4	0	0	0	0.14181	2	1098	1098;1112		101.25	13.498	1	5070700			69798	9487	48923	49002	76069;76070	76069					0.0003451749792020564
RSHDHYQRQRV	11	Unmodified	_RSHDHYQRQRV_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.80535888671875	3	494.58714	1480.73959	-0.78218	-0.00038685	-2.0792	-0.0010283	-2.8613	-0.0014152	494.5857218666552	39.439	0.29882	39.274	39.081	39.379	-0.16458					11	7	2	0	0	0	0.024851	1	3350	3350		14.086	0	1	87036			69799	6054	48924	49003	76071	76071					0.01845020300925171
RSHDRYEF	8	Unmodified	_RSHDRYEF_					0	0	0		nc|ENSG00000161405|Q9UKT9-16|IKZF3;nc|ENSG00000161405|Q9UKT9-12|IKZF3;nc|ENSG00000161405|Q9UKT9-11|IKZF3;nc|ENSG00000161405|Q9UKT9-10|IKZF3;nc|ENSG00000161405|Q9UKT9-13|IKZF3;nc|ENSG00000161405|Q9UKT9-5|IKZF3;nc|ENSG00000161405|Q9UKT9-9|IKZF3;nc|ENSG00000161405|Q9UKT9-6|IKZF3;nc|ENSG00000161405|Q9UKT9-8|IKZF3;nc|ENSG00000161405|Q9UKT9-2|IKZF3;nc|ENSG00000161405|Q9UKT9-15|IKZF3;nc|ENSG00000161405|Q9UKT9-4|IKZF3;nc|ENSG00000161405|Q9UKT9-3|IKZF3;nc|ENSG00000161405|Q9UKT9-7|IKZF3;ENSG00000161405|ENST00000346872|IKZF3	nc|ENSG00000161405|Q9UKT9-16|IKZF3	nc|ENSG00000161405|Q9UKT9-16|IKZF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2769775390625	2	555.259779	1108.50501	-0.35441	-0.00019679	1.2644	0.00070208	0.91	0.00050529	555.2602827241027	41.681	0.19698	41.453	41.315	41.512	-0.2278					8	4	2	0	0	0	0.027866	1	3681	3681		31.955	0	1	221610			69800	6874	48925	49004	76072	76072					-0.04490670507470895
RSHENSFYA	9	Unmodified	_RSHENSFYA_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.7691650390625	2	555.751787	1109.48902	-0.83393	-0.00046346	0.38044	0.00021143	-0.4535	-0.00025203	555.751815074801	38.195	0.22938	37.974	37.761	37.99	-0.22148					8	6	2	0	0	0	0.024261	1	3105	3105		74.255	12.148	1	1490000	+		69801	20232	48926	49005	76073	76073					-0.061343767443759134
RSHFTQDL	8	Unmodified	_RSHFTQDL_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729;ENSG00000185177|ENST00000319636|ZNF479	ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7666931152344	2	502.251423	1002.48829	0.67911	0.00034109	3.2161	0.0016153	3.8952	0.0019564	502.25280767275063	58.913	0.76199	58.913	58.495	59.257	0					33	20	3	0	0	0	0.027866	1	6643	6643		27.882	3.6795	1	890780			69802	9854	48927	49006	76074	76074					-0.012851713934196596
RSHGRRLVA	9	Unmodified	_RSHGRRLVA_					0	0	0			REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7960205078125	2	526.315223	1050.61589	-0.24864	-0.00013086	2.3627	0.0012435	2.1141	0.0011127	526.3163780326583	52.242	0.51934	52.095	51.846	52.366	-0.14735					31	13	3	0	0	0	0.024506	1	5572	5572		30.504	0	1	487420	+		69803	29636	48928	49007	76075	76075					0.09261013991272193
RSHHDTYHMCL	11	Unmodified	_RSHHDTYHMCL_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	REV__nc|ENSG00000148143|Q96JM2-2|ZNF462	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2373046875	3	467.204651	1398.59212	-0.30932	-0.00014452	1.5532	0.00072567	1.2439	0.00058116	467.20529488611305	28.412	0.3817	28.407	28.242	28.624	-0.0042019					13	8	2	0	0	0	0.024869	1	1628	1628		16.53	10.209	1	108570	+		69804	24594	48929	49008	76076	76076					-0.0912295561972769
RSHKKKGDKD	10	Unmodified	_RSHKKKGDKD_					0	0	0			REV__ENSG00000148826|ENST00000368592|NKX6-2	REV__ENSG00000148826|ENST00000368592|NKX6-2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	599.81005859375	2	599.836185	1197.65782	-1.4403	-0.00086396	-2.4619	-0.0014767	-3.9022	-0.0023407	600.3358136119289	76.47	0.16571	76.47	76.391	76.556	0					5	3	2	0	0	0	0.03519	1	9428	9428		31.53	3.6476	1	26304	+		69805	24638	48930	49009	76077	76077					0.06689524889134191
RSHPRIVP	8	Unmodified	_RSHPRIVP_					0	0	0			REV__nc|ENSG00000198911|Q12772-2|SREBF2	REV__nc|ENSG00000198911|Q12772-2|SREBF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.284912109375	2	481.288143	960.561733	0.067692	3.2579E-05	-3.1097	-0.0014966	-3.042	-0.0014641	481.2867681176252	54.614	0.83072	54.463	53.951	54.782	-0.15036					34	23	2	0	0	0	0.027866	1	5966	5966		21.96	0	1	1032700	+		69806	28515	48931	49010	76078	76078					0.07987421839698072
RSHQFVLRRL	10	Unmodified	_RSHQFVLRRL_					0	0	0			REV__nc|ENSG00000177669|Q96T53-2|MBOAT4	REV__nc|ENSG00000177669|Q96T53-2|MBOAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.7372131347656	3	437.930067	1310.76837	1.3064	0.0005721	-1.9164	-0.00083924	-0.60999	-0.00026713	438.26358695998715	59.462	0.56334	59.462	59.182	59.745	0					20	14	2	0	0	0	0.03519	1	6821	6821		22.562	12.458	1	233720	+		69807	27135	48932	49011	76079	76079					0.12541789668034653
RSHQFVLRRL	10	Unmodified	_RSHQFVLRRL_					0	0	0			REV__nc|ENSG00000177669|Q96T53-2|MBOAT4	REV__nc|ENSG00000177669|Q96T53-2|MBOAT4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	437.930067	1310.76837	0.59705	0.00026147	-1.7096	-0.0007487	-1.1126	-0.00048724	437.92921380651063	59.553	0.35471	59.377	59.199	59.554	-0.1761	-0.042819	0.00022566	NaN	17.167	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60711	+		69808	27135	48932	49011							0.12541789668034653
RSHQRCRRRRP	11	Unmodified	_RSHQRCRRRRP_					0	0	0			REV__ENST00000558100.1_1_15:52311447-52334953:+|nuORF	REV__ENST00000558100.1_1_15:52311447-52334953:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7666931152344	3	503.283509	1506.8287	0.32221	0.00016216	1.7124	0.00086184	2.0346	0.001024	503.28396215940006	59.03	0.11446	58.788	58.7	58.814	-0.24166					4	2	2	0	0	0	0.024879	1	6489	6489		8.7993	3.3864	1	200250	+		69809	29639	48933	49012	76080	76080					0.09555576779462172
RSHQRVMHA	9	Unmodified	_RSHQRVMHA_					0	0	0			REV__ENSG00000070476|ENST00000389709|ZXDC	REV__ENSG00000070476|ENST00000389709|ZXDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2703247070312	2	561.290891	1120.56723	-1.2543	-0.00070401	-1.2886	-0.00072329	-2.5429	-0.0014273	561.2908823106766	26.133	0.36753	25.969	25.798	26.165	-0.16331					35	11	5	0	0	0	0.024294	1	1323	1323		29.15	0	1	1139400	+		69810	20426	48934	49013	76081	76081					0.011767773598649
RSHRNNEMAL	10	Unmodified	_RSHRNNEMAL_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.18304443359375	3	409.871889	1226.59384	0.14797	6.065E-05	0.2397	9.8248E-05	0.38768	0.0001589	409.87197973428965	24.444	0.94792	24.27	23.829	24.777	-0.17484					40	21	3	0	0	0	0.03519	1	1119	1119		51.528	5.5555	1	268710			69811	8984	48935	49014	76082	76082					-0.01039578539462127
RSHRRLLAVL	10	Unmodified	_RSHRRLLAVL_					0	0	0		ENST00000374694.2_1_10:35928201-35929404:-|nuORF	ENST00000374694.2_1_10:35928201-35929404:-|nuORF	ENST00000374694.2_1_10:35928201-35929404:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.7371826171875	3	407.594796	1219.76256	-0.51658	-0.00021056	2.806	0.0011437	2.2894	0.00093314	407.9307854813093	37.535	0.2748	37.315	37.231	37.506	-0.2195					8	6	2	0	0	0	0.03519	1	3041	3041		14.694	0	1	27017			69812	13129	48936	49015	76083	76083					0.16146691156382076
RSHSAQPPEE	10	Unmodified	_RSHSAQPPEE_					0	0	0			REV__ZIC4|p.P55H|1|0.19|ENSG00000174963|chr3:147396376-147396376|G/T|missense_variant	REV__ZIC4|p.P55H|1|0.19|ENSG00000174963|chr3:147396376-147396376|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2675170898438	2	569.267801	1136.52105	1.542	0.0008778	-1.9417	-0.0011053	-0.39968	-0.00022752	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.96822	1	887	887		49.536	1.8787	1	2894000	+		69813	37801	48937	49016	76084	76084					-0.04175009061214041
RSHSAQPPEE	10	Unmodified	_RSHSAQPPEE_					0	0	0			REV__ZIC4|p.P55H|1|0.19|ENSG00000174963|chr3:147396376-147396376|G/T|missense_variant	REV__ZIC4|p.P55H|1|0.19|ENSG00000174963|chr3:147396376-147396376|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2677001953125	2	569.267801	1136.52105	2.0313	0.0011564	-2.194	-0.001249	-0.1627	-9.2621E-05	569.2664275407891	24.24	1.2696	24.059	23.671	24.94	-0.18089					84	28	5	0	0	0	0.96822	1	996	996		49.536	3.0793	1	1943300	+		69814	37801	48937	49016	76085	76085					-0.04175009061214041
RSHSPGREQST	11	Unmodified	_RSHSPGREQST_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.8839111328125	3	414.537563	1240.59086	-0.58271	-0.00024155	-2.1769	-0.00090242	-2.7596	-0.001144	414.5364728572513	28.066	0.70839	27.821	27.332	28.041	-0.24524					25	16	2	0	0	0	0.02476	1	1608	1608		25.892	0	1	132720	+		69815	24332	48938	49017	76086	76086					-0.019811303926189794
RSHTLSGLAD	10	Unmodified	_RSHTLSGLAD_					0	0	0			REV__nc|ENSG00000130402|O43707-3|ACTN4	REV__nc|ENSG00000130402|O43707-3|ACTN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2472534179688	2	528.775262	1055.53597	-1.0549	-0.00055779	4.2708	0.0022583	3.2159	0.0017005	528.7777701732205	44.374	0.39613	44.269	44.03	44.426	-0.10468					15	10	2	0	0	0	0.03519	1	4130	4130		32.812	10.853	1	199300	+		69816	23112	48939	49018	76087	76087					0.0104248280676984
RSHTLSGLAD	10	Unmodified	_RSHTLSGLAD_					0	0	0			REV__nc|ENSG00000130402|O43707-3|ACTN4	REV__nc|ENSG00000130402|O43707-3|ACTN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.775262	1055.53597	-1.0048	-0.00053132	4.1273	0.0021824	3.1225	0.0016511	528.777348528456	44.521	0.44534	44.302	44.142	44.587	-0.21939	0.017743	-0.00027813	NaN	25.574	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241620	+		69817	23112	48939	49018							0.0104248280676984
RSHVYFIQCLT	11	Unmodified	_RSHVYFIQCLT_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.7582092285156	3	456.236057	1365.68634	-0.38261	-0.00017456	1.1973	0.00054624	0.81465	0.00037167	456.23801850054815	33.466	0.19429	33.266	33.171	33.365	-0.20019					5	4	2	0	0	0	0.024789	1	2393	2393		15.921	10.778	1	22569			69818	10978	48940	49019	76088	76088					0.018125064740615926
RSHYRRYP	8	Unmodified	_RSHYRRYP_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.78076171875	2	567.799406	1133.58426	0.32152	0.00018256	-0.67438	-0.00038291	-0.35285	-0.00020035	567.7988627780234	57.24	0.75902	57.038	56.71	57.469	-0.20209					46	20	3	0	0	0	0.027866	1	6223	6223		33.516	0.70317	1	834630	+		69819	22635	48941	49020	76089	76089					0.02281021237308778
RSHYRRYP	8	Unmodified	_RSHYRRYP_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.780517578125	2	567.799406	1133.58426	-0.29709	-0.00016869	-0.054553	-3.0975E-05	-0.35164	-0.00019966	567.799158724084	57.299	0.85619	57.074	56.776	57.632	-0.2248					58	22	4	0	0	0	0.027866	1	6222	6222		42.474	4.6629	1	847760	+		69820	22635	48941	49020	76090	76090					0.02281021237308778
RSIALSILI	9	Unmodified	_RSIALSILI_					0	0	0			REV__ENSG00000121381|ENST00000240691|TAS2R9	REV__ENSG00000121381|ENST00000240691|TAS2R9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3064880371094	2	493.32386	984.633166	-0.4012	-0.00019792	0.044717	2.206E-05	-0.35649	-0.00017586	493.32395936873104	56.277	0.28905	56.121	55.995	56.284	-0.15601					10	7	2	0	0	0	0.016885	1	6224	6224		118.74	0	1	58631	+		69821	22593	48942	49021	76091	76091					0.1402349675371397
RSICVVGAG	9	Unmodified	_RSICVVGAG_					0	0	0			REV__ENST00000545748.5_1_12:52431545-52431905:+|nuORF	REV__ENST00000545748.5_1_12:52431545-52431905:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	431.8526306152344	2	431.234187	860.453822	-0.1107	-4.7739E-05	-3.1372	-0.0013529	-3.2479	-0.0014006	431.2327742521283	45.705	0.40495	45.705	45.548	45.953	0					16	11	2	0	0	0	0.024412	1	4498	4498		24.203	6.8378	1	227960	+		69822	34830	48943	49022	76092	76092					0.018012891941111775
RSIETGAEYS	10	Unmodified	_RSIETGAEYS_					0	0	0			REV__ENSG00000129151|ENST00000263182|BBOX1	REV__ENSG00000129151|ENST00000263182|BBOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3237915039062	2	556.76456	1111.51457	-0.064617	-3.5977E-05	3.2298	0.0017982	3.1652	0.0017623	556.7663445557496	76.336	0.72523	76.336	75.994	76.719	0					36	17	3	0	0	0	0.03519	1	9356	9356		39.253	0	1	282920	+		69823	23032	48944	49023	76093	76093					-0.03672947012591976
RSIEVPLN	8	Unmodified	_RSIEVPLN_					0	0	0		ENSG00000131724|ENST00000371666|IL13RA1;nc|ENSG00000131724|P78552-2|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	ENSG00000131724|ENST00000371666|IL13RA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2790832519531	2	464.266542	926.51853	0.10996	5.1051E-05	-0.48706	-0.00022613	-0.3771	-0.00017508	464.26527851447935	51.413	0.24128	51.413	51.359	51.6	0					9	6	2	0	0	0	0.027866	1	5455	5455		18.324	0	1	597660			69824	4543	48945	49024	76094	76094					0.05233187271744555
RSIGLLNPL	9	Unmodified	_RSIGLLNPL_					0	0	0			REV__ENST00000318348.8_1_12:110290068-110290152:-|nuORF	REV__ENST00000318348.8_1_12:110290068-110290152:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2899169921875	2	491.805834	981.597115	-0.60065	-0.00029541	-0.34011	-0.00016727	-0.94076	-0.00046267	491.8054804433628	44.747	0.93258	44.747	44.215	45.147	0					66	26	4	0	0	0	0.023274	1	4287	4287		77.318	25.982	1	1424300	+		69825	30305	48946	49025	76095	76095					0.10558039576847023
RSIGLLNPL	9	Unmodified	_RSIGLLNPL_					0	0	0			REV__ENST00000318348.8_1_12:110290068-110290152:-|nuORF	REV__ENST00000318348.8_1_12:110290068-110290152:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.805834	981.597115	-0.29277	-0.00014399	4.5277	0.0022268	4.235	0.0020828	491.807709834624	45.179	0.23504	44.927	44.709	44.944	-0.25252	0.13238	0.0046056	NaN	77.318	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43228	+		69826	30305	48946	49025							0.10558039576847023
RSIKEMPF	8	Unmodified	_RSIKEMPF_					0	0	0		ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.77886962890625	2	504.27077	1006.52699	-0.55239	-0.00027855	-3.3834	-0.0017061	-3.9357	-0.0019847	504.2673210516015	23.996	0.51582	23.996	23.607	24.123	0					15	11	2	0	0	0	0.027866	1	1011	1011		50.025	9.4519	1	36055			69827	6438	48947	49026	76096	76096					0.023984179167314323
RSIKMGALR	9	Unmodified	_RSIKMGALR_					0	0	0			REV__ENST00000470882.5_1_1:161141608-161143639:-|nuORF	REV__ENST00000470882.5_1_1:161141608-161143639:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8259887695312	2	516.310761	1030.60697	0.31045	0.00016029	1.4867	0.00076762	1.7972	0.0009279	516.8131166565215	57.295	0.79816	57.093	56.633	57.431	-0.20209					33	21	3	0	0	0	0.02435	1	6186	6186		60.972	22.166	1	158840	+		69828	25222	48948	49027	76097	76097					0.09288904310574253
RSIKNWLR	8	Unmodified	_RSIKNWLR_					0	0	0			REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3055419921875	2	536.82235	1071.63015	-1.1283	-0.00060572	-2.068	-0.0011102	-3.1964	-0.0017159	536.820771261541	48.608	0.60343	48.675	48.339	48.943	0.066795					32	16	3	0	0	0	0.027866	1	4853	4853		42.396	6.7778	1	412280	+		69829	36732	48949	49028	76098	76098					0.09719666419528039
RSIKVLHV	8	Unmodified	_RSIKVLHV_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.266357421875	2	476.308544	950.602535	-0.16962	-8.0793E-05	-4.0117	-0.0019108	-4.1814	-0.0019916	476.306420198603	31.604	0.23453	31.419	31.245	31.48	-0.18503					10	5	2	0	0	0	0.027866	1	2121	2121		26.693	9.3279	1	64906	+		69830	20082	48950	49029	76099	76099					0.12525763159317194
RSILAPLAW	9	Unmodified	_RSILAPLAW_					0	0	0		nc|ENSG00000137404|Q8IXM6-2|NRM;ENSG00000137404|ENST00000376421|NRM;ENST00000462857.5_1_6:30657820-30658751:-|nuORF	nc|ENSG00000137404|Q8IXM6-2|NRM	nc|ENSG00000137404|Q8IXM6-2|NRM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.7802124023438	2	513.808377	1025.6022	-0.33336	-0.00017128	-1.272	-0.00065359	-1.6054	-0.00082487	513.8079399634202	75.623	0.75221	75.35	75.06	75.812	-0.27266					27	18	2	0	0	0	0.024209	1	8956	8956		56.721	22.549	1	950390			69831	5117	48951	49030	76100	76100					0.0904234343945518
RSILAPLAW	9	Unmodified	_RSILAPLAW_					0	0	0		nc|ENSG00000137404|Q8IXM6-2|NRM;ENSG00000137404|ENST00000376421|NRM;ENST00000462857.5_1_6:30657820-30658751:-|nuORF	nc|ENSG00000137404|Q8IXM6-2|NRM	nc|ENSG00000137404|Q8IXM6-2|NRM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.779296875	2	513.808377	1025.6022	-0.30608	-0.00015726	-1.1726	-0.00060248	-1.4787	-0.00075975	513.8079429974396	75.596	0.75647	75.338	74.991	75.747	-0.25866					27	18	2	0	0	0	0.024397	1	8965	8965		47.657	13.485	1	1000500			69832	5117	48951	49030	76101	76101					0.0904234343945518
RSILERTA	8	Unmodified	_RSILERTA_					0	0	0			REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.30084228515625	2	473.277441	944.540328	-0.46635	-0.00022071	2.4556	0.0011622	1.9892	0.00094146	473.2799822225966	38.231	0.23243	38.051	37.971	38.203	-0.17929					10	6	2	0	0	0	0.027866	1	3134	3134		14.865	0	1	92984	+		69833	27803	48952	49031	76102	76102					0.06583992020330243
RSILFILD	8	Unmodified	_RSILFILD_					0	0	0			REV__ENST00000554577.5_1_14:24791640-24799178:-|nuORF	REV__ENST00000554577.5_1_14:24791640-24799178:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2301940917969	2	488.794935	975.575317	-0.60185	-0.00029418	-3.561	-0.0017406	-4.1629	-0.0020348	488.79311817488116	31.306	0.36253	31.375	31.124	31.486	0.068962					11	8	2	0	0	0	0.027866	1	1997	1997		40.778	20.781	1	68599	+		69834	34992	48953	49032	76103	76103					0.08655234828290759
RSILGLPPS	9	Unmodified	_RSILGLPPS_					0	0	0			REV__nc|ENSG00000173327|Q16584-2|MAP3K11	REV__nc|ENSG00000173327|Q16584-2|MAP3K11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2843933105469	2	470.284734	938.554916	-0.2298	-0.00010807	-0.065916	-3.0999E-05	-0.29572	-0.00013907	470.28434399632755	50.866	1.0294	50.953	50.615	51.644	0.087006					65	28	3	0	0	0	0.23085	1	5300	5300		84.916	2.675	1	2421200	+		69835	26766	48954	49033	76104	76104					0.08318064168486217
RSILLGPEG	9	Unmodified	_RSILLGPEG_					0	0	0			REV__ENSG00000113396|ENST00000262462|SLC27A6	REV__ENSG00000113396|ENST00000262462|SLC27A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2843933105469	2	471.274367	940.53418	-0.44151	-0.00020807	0.95647	0.00045076	0.51496	0.00024269	471.2744889508428	51.083	0.48434	51.17	50.926	51.411	0.087006					17	12	2	0	0	0	0.024292	1	5300	5300		32.812	0	1	574480	+		69836	22066	48955	49034	76105	76105					0.0615347378881097
RSILNKFIP	9	Unmodified	_RSILNKFIP_					0	0	0		AK3-RCL1|1|fusion;ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1	AK3-RCL1|1|fusion	AK3-RCL1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2830810546875	2	544.334759	1086.65496	-0.7518	-0.00040923	-0.3691	-0.00020091	-1.1209	-0.00061015	544.3346237771701	51.521	0.6147	51.245	50.778	51.393	-0.27643					19	15	2	0	0	0	0.024323	1	5277	5277		35.618	11.416	1	89056			69837	54	48956	49035	76106	76106					0.11510301502289622
RSILNKFIP	9	Unmodified	_RSILNKFIP_					0	0	0		AK3-RCL1|1|fusion;ENSG00000120158|ENST00000381750|RCL1;nc|ENSG00000120158|Q9Y2P8-2|RCL1	AK3-RCL1|1|fusion	AK3-RCL1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.281982421875	2	544.334759	1086.65496	0.43283	0.00023561	-0.90307	-0.00049157	-0.47024	-0.00025597	544.3342786040354	51.352	0.46785	51.171	50.834	51.302	-0.18071					16	11	2	0	0	0	0.024477	1	5283	5283		35.618	5.3006	1	124690			69838	54	48956	49035	76107	76107					0.11510301502289622
RSILPSNLL	9	Unmodified	_RSILPSNLL_					0	0	0		ENST00000485963.5_1_22:21152870-21213097:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENST00000485963.5_1_22:21152870-21213097:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.810546875	2	506.811116	1011.60768	-0.5416	-0.00027449	0.54288	0.00027514	0.0012783	6.4785E-07	506.8112170970329	64.363	0.82664	64.107	63.716	64.542	-0.25563					45	20	4	0	0	0	0.28753	1	7303	7303		77.318	5.4401	1	2160000			69839	10789;15335	48957	49036	76108	76108					0.10234022231293238
RSILSTGDP	9	Unmodified	_RSILSTGDP_					0	0	0			REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	REV__nc|ENSG00000155363|Q9HCE1-2|MOV10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3006286621094	2	473.253631	944.49271	-0.041924	-1.9841E-05	-1.2396	-0.00058664	-1.2815	-0.00060648	473.25307524451256	37.889	0.50385	37.71	37.404	37.908	-0.17929					22	13	2	0	0	0	0.02435	1	3110	3110		42.396	6.7778	1	646180	+		69840	33109	48958	49037	76109	76109					0.01824293029483215
RSILVYFV	8	Unmodified	_RSILVYFV_					0	0	0			REV__ENST00000472897.5_1_X:48432926-48433559:+|nuORF	REV__ENST00000472897.5_1_X:48432926-48433559:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.27337646484375	2	498.797478	995.580402	-0.091529	-4.5655E-05	0.29066	0.00014498	0.19913	9.9328E-05	498.7975670432109	45.541	0.74417	45.585	45.279	46.024	0.043877					36	21	2	0	0	0	0.027866	1	4400	4400		29.15	0	1	2400800	+		69841	33219	48959	49038	76110	76110					0.08243538690896912
RSIMERIMDL	10	Unmodified	_RSIMERIMDL_					0	0	0		nc|ENSG00000120925|Q96K19-4|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170;ENSG00000120925|ENST00000527424|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	nc|ENSG00000120925|Q96K19-4|RNF170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5929870605469	3	421.889781	1262.64751	-0.55242	-0.00023306	-1.4074	-0.00059376	-1.9598	-0.00082682	421.88903108924006	50.011	0.6081	50.011	49.768	50.376	0					45	17	3	0	0	0	0.03519	1	5198	5198		11.097	0	1	1377300			69842	3847	48960	49039	76111	76111					0.02669457848037382
RSINFNEQV	9	Unmodified	_RSINFNEQV_					0	0	0			REV__AMBP|p.I29M|1|0.11|ENSG00000106927|chr9:114078123-114078123|G/C|missense_variant	REV__AMBP|p.I29M|1|0.11|ENSG00000106927|chr9:114078123-114078123|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8182983398438	2	553.783087	1105.55162	-1.3634	-0.000755	-2.8431	-0.0015744	-4.2064	-0.0023294	553.7813174709074	62.795	0.59739	62.556	62.35	62.947	-0.23926					35	15	3	0	0	0	0.024405	1	7296	7296		27.882	0	1	2248900	+		69843	19132	48961	49040	76112	76112					0.0030676932381084043
RSIQDKPPIIL	11	Unmodified	_RSIQDKPPIIL_					0	0	0			REV__ENSG00000120705|ENST00000360541|ETF1	REV__ENSG00000120705|ENST00000360541|ETF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.2652587890625	3	427.2626	1278.76597	0.1987	8.4896E-05	4.029	0.0017214	4.2277	0.0018063	427.26444300600974	54.063	2.6284	53.818	53.421	56.049	-0.2453					263	76	6	0	0	0	1.0471	1	5717	5717		25.892	4.8595	1	50149000	+		69844	22552	48962	49041	76113	76113					0.13773896419706944
RSIQLDGLVW	10	Unmodified	_RSIQLDGLVW_					0	0	0		ENSG00000104529|ENST00000618139|EEF1D;nc|ENSG00000104529|P29692-3|EEF1D;nc|ENSG00000104529|P29692-4|EEF1D;nc|ENSG00000104529|P29692|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.8323974609375	2	593.83258	1185.65061	-0.58427	-0.00034696	0.21985	0.00013056	-0.36441	-0.0002164	593.8325749825296	75.392	0.93343	75.119	74.766	75.699	-0.27266					55	22	4	0	0	0	0.65479	2	8907	8897;8907		70.816	17.727	1	2309100			69845	2579	48963	49042	76114;76115	76115					0.06520792288688426
RSIQLDGLVW	10	Unmodified	_RSIQLDGLVW_					0	0	0		ENSG00000104529|ENST00000618139|EEF1D;nc|ENSG00000104529|P29692-3|EEF1D;nc|ENSG00000104529|P29692-4|EEF1D;nc|ENSG00000104529|P29692|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8318481445312	2	593.83258	1185.65061	-0.97557	-0.00057932	0.52105	0.00030942	-0.45451	-0.00026991	593.8327974369772	75.354	0.96827	75.096	74.779	75.747	-0.25866					57	23	4	0	0	0	0.60734	2	8911	8911;8922		76.17	19.537	1	2242100			69846	2579	48963	49042	76116;76117	76116					0.06520792288688426
RSIQLDGLVW	10	Unmodified	_RSIQLDGLVW_					0	0	0		ENSG00000104529|ENST00000618139|EEF1D;nc|ENSG00000104529|P29692-3|EEF1D;nc|ENSG00000104529|P29692-4|EEF1D;nc|ENSG00000104529|P29692|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	ENSG00000104529|ENST00000618139|EEF1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8323974609375	2	593.83258	1185.65061	-0.19754	-0.00011731	-0.29245	-0.00017366	-0.48999	-0.00029097	593.832336727872	75.226	0.85768	75.05	74.689	75.547	-0.17548					56	20	4	0	0	0	0.55987	3	8867	8867;8877;8891		81.525	10.709	1	2180400			69847	2579	48963	49042	76118;76119;76120	76118					0.06520792288688426
RSIQLPTSSV	10	Unmodified	_RSIQLPTSSV_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.30859375	2	544.308938	1086.60332	-0.12844	-6.9913E-05	0.38557	0.00020987	0.25713	0.00013996	544.3091335060176	104.84	0.82566	104.72	104.29	105.11	-0.12561					63	23	4	0	0	0	1.0816	1	13036	13036		35.152	4.6484	1	843350	+		69848	27815	48964	49043	76121	76121					0.0634851301767867
RSIRLEDL	8	Unmodified	_RSIRLEDL_					0	0	0			REV__ENSG00000100211|ENST00000216029|CBY1	REV__ENSG00000100211|ENST00000216029|CBY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.772216796875	2	501.290548	1000.56654	-0.76769	-0.00038484	4.1388	0.0020748	3.3711	0.0016899	501.2925805753589	55.838	0.74889	55.682	55.386	56.135	-0.15656					58	19	5	0	0	0	0.027866	1	5975	5975		20.947	0	1	1500100	+		69849	21066	48965	49044	76122	76122					0.06628261191792717
RSITFQNP	8	Unmodified	_RSITFQNP_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.269287109375	2	481.756341	961.498129	-0.045563	-2.195E-05	-1.1337	-0.00054618	-1.1793	-0.00056813	481.75608469971155	30.344	1.1362	30.1	29.655	30.791	-0.24415					53	26	3	0	0	0	0.027866	1	2017	2017		74.255	0	1	697730	+		69850	22421	48966	49045	76123	76123					0.015840166119460264
RSITGRMR	8	Unmodified	_RSITGRMR_					0	0	0			REV__ENST00000402237.1_1_6:114405343-114405799:-|nuORF	REV__ENST00000402237.1_1_6:114405343-114405799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7772521972656	2	488.777085	975.539617	0.24269	0.00011862	-0.91844	-0.00044891	-0.67575	-0.00033029	488.77644976552216	52.771	0.62749	52.512	52.135	52.763	-0.25838					31	15	3	0	0	0	0.027866	1	5459	5459		27.882	9.5578	1	754890	+		69851	26218	48967	49046	76124	76124					0.050868740996406814
RSIVEVEC	8	Unmodified	_RSIVEVEC_					0	0	0			REV__nc|ENSG00000165501|Q96L50-2|LRR1	REV__nc|ENSG00000165501|Q96L50-2|LRR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.7387390136719	2	467.73676	933.458967	1.5616	0.00073041	2.6851	0.0012559	4.2466	0.0019863	467.73790477327725	23.529	0.89369	23.338	23.079	23.973	-0.19117					46	20	3	0	0	0	0.80469	1	913	913		58.782	9.3404	1	1882100	+		69852	25895	48968	49047	76125	76125					-0.010424517339288286
RSIVSQHF	8	Unmodified	_RSIVSQHF_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.77850341796875	2	487.264333	972.514114	-0.083537	-4.0705E-05	-0.84955	-0.00041395	-0.93308	-0.00045466	487.26348488553043	52.894	0.75324	52.767	52.273	53.027	-0.12705					23	18	2	0	0	0	0.027866	1	5444	5444		56.721	13.095	1	96397	+		69853	19713;23476	48969	49048	76126	76126					0.02675722848857731
RSIVSQHF	8	Unmodified	_RSIVSQHF_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.264333	972.514114	0.48242	0.00023507	-1.4461	-0.00070464	-0.96369	-0.00046957	487.26345486923327	53.189	0.47212	52.931	52.603	53.075	-0.25838	0.071316	-0.00052541	NaN	56.721	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105780	+		69854	19713;23476	48969	49048							0.02675722848857731
RSIVSQHF	8	Unmodified	_RSIVSQHF_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.264333	972.514114	0.26054	0.00012695	0.10293	5.0152E-05	0.36346	0.0001771	487.2637482224058	53.071	0.66045	52.881	52.51	53.171	-0.18982	0.021445	0.00098418	NaN	56.721	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219560	+		69855	19713;23476	48969	49048							0.02675722848857731
RSIVVNKLGL	10	Unmodified	_RSIVVNKLGL_					0	0	0			REV__ENSG00000120832|ENST00000240050|MTERF2	REV__ENSG00000120832|ENST00000240050|MTERF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2982788085938	2	549.853316	1097.69208	0.34028	0.00018711	2.6782	0.0014726	3.0185	0.0016597	549.8547069105502	54.407	0.841	54.201	53.881	54.722	-0.20613					53	22	4	0	0	0	0.03519	1	5813	5813		39.253	1.4413	1	1793600	+		69856	22564	48970	49049	76127	76127					0.14713973048037587
RSIYFDNL	8	Unmodified	_RSIYFDNL_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8189086914062	2	514.263999	1026.51345	-0.93612	-0.00048141	-0.11752	-6.0436E-05	-1.0536	-0.00054185	514.2639988307986	68.759	0.44496	68.498	68.181	68.626	-0.26165					16	10	2	0	0	0	0.027866	1	7938	7938		27.882	1.1893	1	149720			69857	5322	48971	49050	76128	76128					0.0012488340912568674
RSKAARSCLD	10	Unmodified	_RSKAARSCLD_					0	0	0		ENST00000400768.2_1_2:242674794-242674905:-|nuORF	ENST00000400768.2_1_2:242674794-242674905:-|nuORF	ENST00000400768.2_1_2:242674794-242674905:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7886962890625	2	553.790389	1105.56623	0.44306	0.00024536	-3.688	-0.0020424	-3.245	-0.001797	553.788145058579	19.005	0.79214	18.845	18.441	19.233	-0.16079					29	15	3	0	0	0	1.0074	1	364	364		45.022	1.3714	1	313470			69858	13661	48972	49051	76129	76129					0.017665182002929214
RSKAMSQRT	9	Unmodified	_RSKAMSQRT_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3051147460938	2	532.785107	1063.55566	-0.34067	-0.0001815	-3.0811	-0.0016416	-3.4218	-0.0018231	532.782651941204	63.448	0.43194	63.196	62.976	63.408	-0.25141					21	11	2	0	0	0	0.024319	1	7382	7382		47.657	5.2612	1	142660	+		69859	20200	48973	49052	76130	76130					0.02642535545874125
RSKDPPGR	8	Unmodified	_RSKDPPGR_					0	0	0		nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	nc|ENSG00000100346|Q9P0X4-4|CACNA1I	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.7527770996094	2	456.754133	911.493713	0.055479	2.534E-05	0.23913	0.00010922	0.29461	0.00013456	456.75415311356403	22.693	1.1494	22.693	22.291	23.441	0					55	25	4	0	0	0	0.95514	1	830	830		44.377	3.599	1	808900			69860	2186	48974	49053	76131	76131					0.034425521890511845
RSKEDGRLY	9	Unmodified	_RSKEDGRLY_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.2962036132812	2	562.296362	1122.57817	-0.065036	-3.657E-05	-0.19639	-0.00011043	-0.26143	-0.000147	562.296115581081	21.648	0.67597	21.457	21.177	21.853	-0.19072					31	13	3	0	0	0	0.54416	1	691	691		56.434	5.0983	1	275570			69861	4253	48975	49054	76132	76132					0.021784582151667564
RSKEDGRLY	9	Unmodified	_RSKEDGRLY_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2960205078125	2	562.296362	1122.57817	-1.3653	-0.00076771	1.2564	0.00070647	-0.1089	-6.1234E-05	562.2969206731343	21.593	0.72857	21.381	21.069	21.798	-0.2128					33	14	4	0	0	0	0.48817	1	667	667		60.118	0	1	312750			69862	4253	48975	49054	76133	76133					0.021784582151667564
RSKEDGRLY	9	Unmodified	_RSKEDGRLY_					0	0	0		nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-4|PKMYT1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	562.296362	1122.57817	0.25959	0.00014597	-0.52035	-0.00029259	-0.26076	-0.00014662	562.2959376859831	21.47	0.76542	21.292	21.016	21.781	-0.17721	-0.084405	-0.00074358	NaN	60.118	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325050			69863	4253	48975	49054							0.021784582151667564
RSKEEKEQKL	10	Unmodified	_RSKEEKEQKL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	637.2687377929688	2	637.856783	1273.69901	-0.8975	-0.00057248	-4.0783	-0.0026013	-4.9758	-0.0031738	637.854175413698	34.614	0.52424	34.438	34.168	34.692	-0.17557					16	12	2	0	0	0	0.03519	1	2559	2559		69.628	13.194	1	94121			69864	10660	48976	49055	76134	76134					0.07311241137927027
RSKERAGK	8	Unmodified	_RSKERAGK_					0	0	0		ENST00000359901.8_1_2:98128184-98128274:-|nuORF	ENST00000359901.8_1_2:98128184-98128274:-|nuORF	ENST00000359901.8_1_2:98128184-98128274:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.2557373046875	2	466.275232	930.535912	-0.10707	-4.9923E-05	2.8672	0.0013369	2.7602	0.001287	466.27641825006435	47.531	1.0314	47.434	47.046	48.077	-0.096649					60	27	3	0	0	0	0.027866	1	4633	4633		10.265	0	1	4863200			69865	12752	48977	49056	76135	76135					0.06786527597421355
RSKESEVFY	9	Unmodified	_RSKESEVFY_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.78564453125	2	572.785296	1143.55604	0.039813	2.2804E-05	-0.22093	-0.00012654	-0.18112	-0.00010374	572.7850078359043	34.14	0.82007	33.916	33.6	34.42	-0.22412					61	20	4	0	0	0	0.28753	2	2497	2484;2497		77.318	22.855	1	2127200			69866	2235	48978	49057	76136;76137	76137					-0.009997662532896356
RSKESEVFY	9	Unmodified	_RSKESEVFY_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.7858276367188	2	572.785296	1143.55604	-0.29891	-0.00017121	0.11465	6.5672E-05	-0.18426	-0.00010554	572.7852094901364	34.002	0.89589	33.795	33.511	34.406	-0.20696					60	22	4	0	0	0	0.37611	2	2455	2455;2464		67.494	17.958	1	2542000			69867	2235	48978	49057	76138;76139	76138					-0.009997662532896356
RSKESEVFY	9	Unmodified	_RSKESEVFY_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.7858276367188	2	572.785296	1143.55604	-1.1853	-0.00067892	0.92613	0.00053047	-0.25916	-0.00014844	572.7856901759533	34.037	0.82845	33.862	33.545	34.374	-0.17557					58	20	4	0	0	0	0.32064	1	2460	2460		72.879	17.375	1	2087000			69868	2235	48978	49057	76140	76140					-0.009997662532896356
RSKESLVSF	9	Unmodified	_RSKESLVSF_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.7902221679688	2	526.790381	1051.56621	-0.51836	-0.00027307	0.15271	8.0449E-05	-0.36564	-0.00019262	526.7903711560233	41.101	0.77305	40.965	40.635	41.409	-0.13553					59	19	4	0	0	0	0.062622	3	3611	3601;3611;3624		124.08	41.84	1	4597800			69869	1603	48979	49058	76141;76142;76143	76142					0.042488414719628054
RSKESLVSF	9	Unmodified	_RSKESLVSF_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.7905883789062	2	526.790381	1051.56621	-0.42437	-0.00022355	0.052074	2.7432E-05	-0.3723	-0.00019612	526.7903105536759	41.295	0.74488	41.067	40.729	41.474	-0.2278					64	18	5	0	0	0	0.077175	2	3622	3622;3647		118.74	41.969	1	4600400			69870	1603	48979	49058	76144;76145	76144					0.042488414719628054
RSKESLVSF	9	Unmodified	_RSKESLVSF_					0	0	0		ENSG00000077232|ENST00000264065|DNAJC10;nc|ENSG00000077232|Q8IXB1-3|DNAJC10;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF	ENSG00000077232|ENST00000264065|DNAJC10	ENSG00000077232|ENST00000264065|DNAJC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.7901611328125	2	526.790381	1051.56621	-0.61125	-0.000322	0.22027	0.00011603	-0.39098	-0.00020596	526.7904059889261	41.329	0.77077	41.099	40.809	41.58	-0.2303					62	19	4	0	0	0	0.043667	4	3617	3617;3629;3642;3654		131.03	43.277	1	4494600			69871	1603	48979	49058	76146;76147;76148;76149	76146					0.042488414719628054
RSKESVPEF	9	Unmodified	_RSKESVPEF_					0	0	0		ENST00000465604.1_1_1:26229981-26231212:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1	ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENST00000465604.1_1_1:26229981-26231212:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	539.7796630859375	2	539.780013	1077.54547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.459	1	35.273	34.773	35.773	-0.18675								0	0	0	0.24781	1	2677	2677		71.877	5.4482	1				69872	3649	48980	49059	76150	76150					0.009802510922781948
RSKETEVFY	9	Unmodified	_RSKETEVFY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.7925415039062	2	579.793121	1157.57169	-0.67395	-0.00039075	0.60586	0.00035127	-0.068098	-3.9483E-05	579.793373549915	35.77	0.5128	35.565	35.306	35.819	-0.20518					35	13	4	0	0	0	0.12914	2	2742	2732;2742		104.06	45.275	1	2964200			69873	3512	48981	49060	76151;76152	76152					-0.0007947973624595761
RSKETEVFY	9	Unmodified	_RSKETEVFY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.7929077148438	2	579.793121	1157.57169	-0.8872	-0.00051439	0.80545	0.00046699	-0.081755	-4.7401E-05	579.7934292861822	35.739	0.49079	35.527	35.193	35.684	-0.21246					33	12	4	0	0	0	0.2101	2	2728	2728;2741		87.696	18.91	1	2917900			69874	3512	48981	49060	76153;76154	76153					-0.0007947973624595761
RSKETEVFY	9	Unmodified	_RSKETEVFY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.7930908203125	2	579.793121	1157.57169	-0.70709	-0.00040997	0.61281	0.0003553	-0.094289	-5.4668E-05	579.7933953402097	35.619	0.53956	35.432	35.18	35.72	-0.18675					40	14	4	0	0	0	0.12914	2	2713	2700;2713		104.06	41.949	1	3003100			69875	3512	48981	49060	76155;76156	76156					-0.0007947973624595761
RSKETEVFY	9	Unmodified	_RSKETEVFY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	579.793121	1157.57169	-1.4781	-0.00085699	-4.4235	-0.0025647	-5.9016	-0.0034217	579.7907162525325	35.193	0.6481	35.171	34.941	35.589	-0.021763	-0.22795	-0.0053963	NaN	104.06	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74612			69876	3512	48981	49060							-0.0007947973624595761
RSKETEVFY	9	Unmodified	_RSKETEVFY_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	579.793121	1157.57169	-0.50872	-0.00029495	-4.8694	-0.0028232	-5.3781	-0.0031182	579.7902665243508	35.257	0.91817	35.301	34.904	35.822	0.04406	-0.09828	-0.0059134	NaN	104.06	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67619			69877	3512	48981	49060							-0.0007947973624595761
RSKETLQLI	9	Unmodified	_RSKETLQLI_					0	0	0			REV__ENST00000372447.7_1_9:132589634-132589790:-|nuORF	REV__ENST00000372447.7_1_9:132589634-132589790:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8101806640625	2	544.327131	1086.63971	-0.86711	-0.00047199	1.4146	0.00077003	0.54753	0.00029803	544.3271125848637	45.015	1.1601	44.762	43.859	45.019	-0.25252					61	30	3	0	0	0	0.024457	1	4091	4091		37.159	3.6435	1	548430	+		69878	31205	48982	49061	76157	76157					0.09985389914436382
RSKFAFFFCI	10	Unmodified	_RSKFAFFFCI_					0	0	0			REV__ENSG00000036828|ENST00000639785|CASR	REV__ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5180358886719	3	422.554838	1264.64269	0.1867	7.889E-05	3.5444	0.0014977	3.7311	0.0015766	422.8898435418919	30.81	0.50767	30.657	30.298	30.806	-0.15231					28	11	4	0	0	0	0.03519	1	1992	1992		29.17	1.5261	1	61153	+		69879	20067	48983	49062	76158	76158					0.020949417676092708
RSKFAKTL	8	Unmodified	_RSKFAKTL_					0	0	0			REV__ENST00000462744.5_1_1:59762566-59797652:+|nuORF	REV__ENST00000462744.5_1_1:59762566-59797652:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.79266357421875	2	475.792727	949.5709	-0.41854	-0.00019914	0.69843	0.00033231	0.27989	0.00013317	475.7928349688582	56.13	1.0523	56.227	55.634	56.686	0.097893					67	28	3	0	0	0	0.87148	1	6164	6164		53.351	3.3269	1	2458900	+		69880	32915	48984	49063	76159	76159					0.09409770405375184
RSKGKNQSNL	10	Unmodified	_RSKGKNQSNL_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.8319091796875	2	566.315086	1130.61562	-0.053551	-3.0327E-05	4.2622	0.0024138	4.2087	0.0023834	566.3172344714976	53.679	0.56123	53.433	53.125	53.687	-0.2453					36	15	4	0	0	0	0.03519	1	5674	5674		12.207	0	1	970610	+		69881	25925	48985	49064	76160	76160					0.055535494807600116
RSKGLSYAL	9	Unmodified	_RSKGLSYAL_					0	0	0			REV__ENST00000238616.9_1_14:75549190-75549412:-|nuORF	REV__ENST00000238616.9_1_14:75549190-75549412:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.7641906738281	2	497.787641	993.56073	-0.6206	-0.00030893	-1.5205	-0.00075689	-2.1411	-0.0010658	497.78694320909904	42.63	0.53249	42.404	42.181	42.714	-0.22597					21	13	2	0	0	0	0.024381	1	3851	3851		37.159	0	1	116570	+		69882	29440	48986	49065	76161	76161					0.06369162680130103
RSKIAETF	8	Unmodified	_RSKIAETF_					0	0	0		NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	NUB1|p.K330Nfs*2|1|0.24|ENSG00000013374|chr7:151367049-151367049|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.26654052734375	2	476.266542	950.51853	-0.41395	-0.00019715	-0.25686	-0.00012233	-0.6708	-0.00031948	476.2664642284955	31.629	1.4048	31.476	31.124	32.529	-0.15231					112	34	5	0	0	0	0.36844	1	2091	2091		101.6	7.5943	1	24194000			69883	914	48987	49066	76162	76162					0.04129187271769297
RSKKAVWHKLL	11	Unmodified	_RSKKAVWHKLL_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198838|ENST00000634891|RYR3;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.8880920410156	3	455.954101	1364.84047	-0.97153	-0.00044297	-3.0567	-0.0013937	-4.0282	-0.0018367	455.95289077425844	37.801	0.25761	37.581	37.468	37.726	-0.2195					11	6	3	0	0	0	0.02478	1	3045	3045		32.034	0	1	102260			69884	10221;10159	48988	49067	76163	76163					0.17264704021749822
RSKKSRALF	9	Unmodified	_RSKKSRALF_					0	0	0		ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.7954711914062	2	546.835457	1091.65636	-0.63259	-0.00034592	2.5211	0.0013786	1.8885	0.0010327	546.8368725433306	61.989	0.4061	61.762	61.573	61.979	-0.22663					24	10	3	0	0	0	0.024541	1	7178	7178		21.96	1.013	1	301630			69885	9024	48989	49068	76164	76164					0.11419935591038666
RSKKTLEL	8	Unmodified	_RSKKTLEL_					0	0	0		ENST00000296666.12_1_5:126862366-126866010:+|nuORF	ENST00000296666.12_1_5:126862366-126866010:+|nuORF	ENST00000296666.12_1_5:126862366-126866010:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2816467285156	2	487.803291	973.59203	-0.30151	-0.00014708	4.1929	0.0020453	3.8914	0.0018982	487.80528198105816	57.207	0.92507	57.207	56.571	57.496	0					43	25	2	0	0	0	0.027866	1	6459	6459		38.806	3.1879	1	465080			69886	11847	48990	49069	76165	76165					0.10417735714224818
RSKKVIVE	8	Unmodified	_RSKKVIVE_					0	0	0			REV__ENSG00000124140|ENST00000243964|SLC12A5	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7927551269531	2	479.805834	957.597115	-0.79305	-0.00038051	-0.098572	-4.7295E-05	-0.89162	-0.0004278	479.8055248202309	30.438	0.50015	30.26	29.997	30.497	-0.17818					24	11	3	0	0	0	0.027866	1	1963	1963		35.618	0	1	345430	+		69887	22735	48991	49070	76166	76166					0.11662039576845018
RSKLEDDPL	9	Unmodified	_RSKLEDDPL_					0	0	0		ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-2|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198838|ENST00000634891|RYR3	ENSG00000198838|ENST00000634891|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3076782226562	2	536.785296	1071.55604	-0.35635	-0.00019128	-1.1003	-0.00059064	-1.4567	-0.00078192	537.2847739418526	67.866	1.089	67.885	67.225	68.314	0.018913					58	27	4	0	0	0	0.023061	1	8097	8097		90.37	26.163	1	557370			69888	10221	48992	49071	76167	76167					0.023122337467157195
RSKLEQVV	8	Unmodified	_RSKLEQVV_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA1|p.R1880Q|1|0.2|ENSG00000114554|chr3:127033965-127033965|G/A|missense_variant;ENST00000503234.5_1_3:126746482-126752857:+|nuORF	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7878112792969	2	479.787641	957.56073	-1.1138	-0.00053437	0.082432	3.955E-05	-1.0313	-0.00049482	479.78740465299296	22.219	0.48206	22.293	22.125	22.607	0.073954					33	9	5	0	0	0	0.96769	1	712	712		42.396	0	1	1215700			69889	3370	48993	49072	76168	76168					0.08025162680155518
RSKLKAMTL	9	Unmodified	_RSKLKAMTL_					0	0	0		ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8211669921875	2	524.320794	1046.62703	-0.84149	-0.00044121	3.9651	0.002079	3.1236	0.0016378	524.3227947639532	48.262	1.4726	48.165	47.485	48.958	-0.097553					81	39	3	0	0	0	0.024367	1	4762	4762		52.937	38.072	1	9015500			69890	10467	48994	49073	76169	76169					0.1055865525054287
RSKLKIKN	8	Unmodified	_RSKLKIKN_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.8266296386719	2	493.827101	985.639649	0.082668	4.0824E-05	2.7775	0.0013716	2.8602	0.0014124	493.8283528672914	105.86	0.60603	105.86	105.59	106.2	-0.0013123					28	21	2	0	0	0	1.0338	1	13552	13552		31.955	0	1	80982	+		69891	23370	48995	49074	76170	76170					0.14625434705067164
RSKLTENL	8	Unmodified	_RSKLTENL_					0	0	0		nc|ENSG00000059758|Q00537-2|CDK17;ENSG00000059758|ENST00000261211|CDK17;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000476153.6_1_1:205492708-205496295:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17;ENST00000505932.5_1_1:205492708-205498898:+|nuORF	nc|ENSG00000059758|Q00537-2|CDK17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.7773132324219	2	480.777274	959.539994	0.24131	0.00011602	-0.61038	-0.00029346	-0.36907	-0.00017744	480.77695466379254	27.761	1.4132	27.519	26.911	28.325	-0.24217					89	33	5	0	0	0	0.5947	1	1578	1578		76.774	5.3962	1	4879700			69892	1225;15735	48996	49075	76171	76171					0.058605723004689025
RSKNKSSECS	10	Unmodified	_RSKNKSSECS_					0	0	0			REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1	REV__nc|ENSG00000157985|Q9UPQ3-2|AGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2678833007812	2	563.269487	1124.52442	-0.24281	-0.00013676	-2.7236	-0.0015341	-2.9665	-0.0016709	563.2677150653773	23.556	1.4804	23.376	23.112	24.593	-0.17989					93	34	5	0	0	0	0.88978	1	940	940		54.722	5.1863	1	7326800	+		69893	25163	48997	49076	76172	76172					-0.03286082278873437
RSKPNRKI	8	Unmodified	_RSKPNRKI_					0	0	0			REV__ENSG00000100565|ENST00000689127|LRRC74A	REV__ENSG00000100565|ENST00000689127|LRRC74A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7457275390625	2	499.814525	997.614496	-0.93377	-0.00046671	3.2493	0.001624	2.3155	0.0011573	499.81591847929894	41.383	0.47022	41.153	40.964	41.434	-0.23029					23	11	3	0	0	0	0.027866	1	3660	3660		17.365	0	1	225420	+		69894	21131	48998	49077	76173	76173					0.1155937990251914
RSKQKQRPT	9	Unmodified	_RSKQKQRPT_					0	0	0			REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	REV__ZNF268|p.G669Efs*21|1|0.57|ENSG00000090612|chr12:133203690-133203721|TGGATGCAGTCAATGTGCAAAAACCTTTAGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.8054809570312	2	564.833446	1127.65234	-0.67397	-0.00038068	3.2253	0.0018217	2.5513	0.001441	564.8348378361421	56.392	0.11009	56.392	56.314	56.424	0					4	2	2	0	0	0	0.024477	1	6278	6278		35.618	16.515	1	34796	+		69895	20880	48999	49078	76174	76174					0.09361846097317539
RSKRKIQG	8	Unmodified	_RSKRKIQG_					0	0	0		ENSG00000151914|ENST00000680361|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;ENST00000517937.1_1_6:56599965-56716690:-|nuORF;nc|ENSG00000151914|Q03001-11|DST;ENST00000524302.1_1_6:56716117-56716639:-|nuORF	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29058837890625	2	486.8067	971.598846	-0.47619	-0.00023181	2.8219	0.0013737	2.3457	0.0011419	486.80792197149486	27.097	0.59948	27.084	26.828	27.427	-0.012983					37	15	4	0	0	0	0.027866	1	1491	1491		30.504	1.3541	1	856420			69896	6240	49000	49079	76175	76175					0.11191093385468776
RSKRKQKTIP	10	Unmodified	_RSKRKQKTIP_					0	0	0		ENST00000416382.6_1_10:11373873-11374074:+|nuORF	ENST00000416382.6_1_10:11373873-11374074:+|nuORF	ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3929443359375	2	621.39367	1240.77279	-1.2361	-0.00076809	0.13662	8.4894E-05	-1.0995	-0.0006832	621.3936308468791	103.45	0.61192	103.32	103.09	103.7	-0.12783					38	14	4	0	0	0	1.1307	1	12870	12870		26.693	1.1189	1	482820			69897	13898	49001	49080	76176	76176					0.1620325409094221
RSKRLKEKA	9	Unmodified	_RSKRLKEKA_					0	0	0			REV__ENSG00000198162|ENST00000356554|MAN1A2	REV__ENSG00000198162|ENST00000356554|MAN1A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3116455078125	2	558.354014	1114.69348	-0.5749	-0.000321	-1.0227	-0.00057103	-1.5976	-0.00089202	558.3535193318189	22.637	0.28335	22.562	22.411	22.694	-0.075294					8	5	2	0	0	0	0.0245	1	802	802		36.447	0	1	24440	+		69898	28392	49002	49081	76177	76177					0.14071607136793318
RSKSIKSLALL	11	Unmodified	_RSKSIKSLALL_					0	0	0		nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-4|DNA2	nc|ENSG00000138346|P51530-4|DNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2349853515625	3	405.930962	1214.77106	-0.64108	-0.00026024	1.5292	0.00062073	0.88807	0.00036049	405.93163926967543	28.615	0.83818	28.463	28.203	29.041	-0.15195					34	19	3	0	0	0	0.024723	1	1739	1739		28.577	11.41	1	154430			69899	5228	49003	49082	76178	76178					0.17226200282311765
RSKSIKSLALL	11	Unmodified	_RSKSIKSLALL_					0	0	0		nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-4|DNA2	nc|ENSG00000138346|P51530-4|DNA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	405.930962	1214.77106	-0.82756	-0.00033593	1.9602	0.00079573	1.1327	0.0004598	405.9317231726698	28.548	0.71664	28.302	28.121	28.838	-0.24524	-0.06655	0.00034646	NaN	28.577	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190040			69900	5228	49003	49082							0.17226200282311765
RSKSIKSLALL	11	Unmodified	_RSKSIKSLALL_					0	0	0		nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-4|DNA2	nc|ENSG00000138346|P51530-4|DNA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	405.930962	1214.77106	0.1017	4.1281E-05	1.1438	0.00046428	1.2454	0.00050557	405.9312707463851	28.51	0.76412	28.341	28.089	28.854	-0.16897	-0.027625	-0.00064787	NaN	28.577	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140740			69901	5228	49003	49082							0.17226200282311765
RSKSSLKTLFI	11	Unmodified	_RSKSSLKTLFI_					0	0	0		nc|ENSG00000247315|Q9NUD5-2|ZCCHC3;ENSG00000247315|ENST00000500893|ZCCHC3	nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2646484375	3	427.2626	1278.76597	-0.029898	-1.2774E-05	4.3178	0.0018448	4.2879	0.0018321	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0592	1	5929	5929		22.562	0.78116	1	50736000			69902	10829	49004	49083	76179	76179					0.13773896419706944
RSKTKVPVQ	9	Unmodified	_RSKTKVPVQ_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3095703125	2	521.822015	1041.62948	-0.8965	-0.00046781	0.0084867	4.4286E-06	-0.88801	-0.00046339	521.8220445880987	32.079	0.70723	32.079	31.749	32.457	0					26	17	3	0	0	0	0.024017	1	2245	2245		65.465	6.6834	1	217570			69903	10526	49005	49084	76180	76180					0.11032826979840138
RSKTKVPVQ	9	Unmodified	_RSKTKVPVQ_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.822015	1041.62948	-0.51447	-0.00026846	-0.51009	-0.00026617	-1.0246	-0.00053463	521.821835288928	31.756	0.52279	31.825	31.486	32.009	0.068962	-0.12687	-0.00025008	NaN	65.465	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306030			69904	10526	49005	49084							0.11032826979840138
RSKTTNTW	8	Unmodified	_RSKTTNTW_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	497.25921630859375	2	497.259248	992.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.7	1	20.532	20.032	21.032	-0.16774								0	0	0	0.34979	1	580	580		102.77	15.077	1				69905	6655	49006	49085	76181	76181					0.007391151236220139
RSKTTNTW	8	Unmodified	_RSKTTNTW_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	497.25909423828125	2	497.259248	992.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.797	1	20.629	20.129	21.129	-0.16774								0	0	0	0.34979	1	592	592		102.77	15.077	1				69906	6655	49006	49085	76182	76182					0.007391151236220139
RSKTTNTW	8	Unmodified	_RSKTTNTW_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	497.2591857910156	2	497.259248	992.503943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.9	1	20.728	20.228	21.228	-0.1718								0	0	0	0.32495	1	605	605		79.451	5.4763	1				69907	6655	49006	49085	76183	76183					0.007391151236220139
RSLAALDALN	10	Unmodified	_RSLAALDALN_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3065795898438	2	522.29583	1042.57711	-0.2544	-0.00013287	4.1714	0.0021787	3.917	0.0020458	522.2978621918032	52.916	0.49323	52.769	52.53	53.023	-0.14723					22	12	2	0	0	0	0.03519	1	5703	5703		54.776	10.66	1	2378400			69908	5396	49007	49086	76184	76184					0.057522438462456194
RSLAANRSP	9	Unmodified	_RSLAANRSP_					0	0	0			REV__NCKAP1-PARD3|1|fusion	REV__NCKAP1-PARD3|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3087158203125	2	486.27269	970.530826	-1.2196	-0.00059307	-0.12696	-6.1737E-05	-1.3466	-0.00065481	486.2724933353545	20.731	0.6258	20.731	20.323	20.949	0					29	12	3	0	0	0	0.024261	1	523	523		64.207	7.4862	1	263790	+		69909	24623	49008	49087	76185	76185					0.044382237348031595
RSLADQSQLA	10	Unmodified	_RSLADQSQLA_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7900390625	2	544.78837	1087.56219	0.2611	0.00014224	3.0044	0.0016368	3.2655	0.001779	544.7898935213664	59.088	1.5345	59.088	58.531	60.066	0					108	41	5	0	0	0	0.69662	1	6754	6754		67.494	5.3863	1	9057000	+		69910	34973	49009	49088	76186	76186					0.021907519782416784
RSLAEIVLP	9	Unmodified	_RSLAEIVLP_					0	0	0		HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|76|3|anti-sense	HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|76|3|anti-sense	HERV16-int_dup1770|chr22:34671745-34673105:+|1.0259314078024293|0.0137771749387249|6.22|429.0|76|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.787841796875	2	499.305667	996.596781	0.14751	7.3654E-05	0.15847	7.9125E-05	0.30598	0.00015278	499.30568636468263	71.135	0.49706	71.146	70.937	71.434	0.010735					26	12	3	0	0	0	0.024294	1	8556	8556		55.504	4.1688	1	475750			69911	17710	49010	49089	76187	76187					0.09834619856997051
RSLAHWQT	8	Unmodified	_RSLAHWQT_					0	0	0			REV__ENST00000512407.5_1_4:108984787-108993278:-|nuORF	REV__ENST00000512407.5_1_4:108984787-108993278:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7717590332031	2	499.761958	997.509363	-0.52102	-0.00026039	3.9001	0.0019491	3.3791	0.0016888	500.26521718671415	28.807	0.30233	28.638	28.467	28.769	-0.16897					10	6	2	0	0	0	0.027866	1	1698	1698		5.9211	0	1	52237	+		69912	34136	49011	49090	76188	76188					0.010508387061008762
RSLAKVHLA	9	Unmodified	_RSLAKVHLA_					0	0	0			REV__ENST00000552433.1_1_12:51449776-51450294:+|nuORF	REV__ENST00000552433.1_1_12:51449776-51450294:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.76116943359375	2	497.811451	993.608348	0.036919	1.8379E-05	-0.7758	-0.0003862	-0.73888	-0.00036782	497.81116545338375	52.771	0.27693	52.513	52.326	52.603	-0.25838					10	6	2	0	0	0	0.024506	1	5479	5479		23.042	3.6825	1	117300	+		69913	20159	49012	49091	76189	76189					0.11128861670988499
RSLAKVIMV	9	Unmodified	_RSLAKVIMV_					0	0	0		nc|ENSG00000108852|Q14168|MPP2	nc|ENSG00000108852|Q14168|MPP2	nc|ENSG00000108852|Q14168|MPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7749938964844	2	508.817887	1015.62122	-0.29802	-0.00015164	-0.61005	-0.0003104	-0.90807	-0.00046204	508.8173955293912	45.894	0.3072	45.894	45.748	46.056	0					11	8	2	0	0	0	0.024506	1	4481	4481		30.504	0	1	103150			69914	18165	49013	49092	76190	76190					0.11403556738866882
RSLAYIHSF	9	Unmodified	_RSLAYIHSF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.292236328125	2	547.293091	1092.57163	-0.33689	-0.00018438	-0.36362	-0.00019901	-0.70051	-0.00038338	547.2927270720672	47.278	0.62479	47.181	46.897	47.521	-0.096649					52	16	4	0	0	0	0.2508	1	4622	4622		82.241	10.363	1	1649400			69915	1739	49014	49093	76191	76191					0.029045650544276214
RSLAYIHSF	9	Unmodified	_RSLAYIHSF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.293091	1092.57163	-0.69227	-0.00037888	-4.7715	-0.0026114	-5.4637	-0.0029903	547.2907291972754	47.307	0.65463	47.307	46.967	47.622	0	0.011538	-0.0036757	NaN	82.241	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899400			69916	1739	49014	49093							0.029045650544276214
RSLAYIHSF	9	Unmodified	_RSLAYIHSF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.293091	1092.57163	-0.3322	-0.00018181	-4.8429	-0.0026505	-5.1751	-0.0028323	547.2904998525543	47.506	0.78897	47.353	46.817	47.606	-0.15301	0.057814	-0.0037539	NaN	82.241	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	767140			69917	1739	49014	49093							0.029045650544276214
RSLAYIHSF	9	Unmodified	_RSLAYIHSF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	547.293091	1092.57163	-1.4839	-0.00081211	-4.1185	-0.002254	-5.6024	-0.0030661	547.2910189527423	47.3	0.55915	47.359	46.995	47.554	0.059093	0.063766	-0.002961	NaN	82.241	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758930			69918	1739	49014	49093							0.029045650544276214
RSLAYIHSF	9	Unmodified	_RSLAYIHSF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	547.293091	1092.57163	-0.37063	-0.00020285	-0.45343	-0.00024816	-0.82406	-0.000451	547.292635046687	47.403	0.6679	47.21	46.886	47.554	-0.19387	-0.085873	0.0010508	NaN	82.241	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1464600			69919	1739	49014	49093							0.029045650544276214
RSLCTITEV	9	Unmodified	_RSLCTITEV_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.3099060058594	2	511.270967	1020.52738	-0.2838	-0.0001451	0.9362	0.00047865	0.65241	0.00033356	511.2713889728294	77.186	0.79319	76.975	76.668	77.461	-0.21087					28	18	2	0	0	0	0.02435	1	9495	9495		42.396	0	1	419670	+		69920	19300	49015	49094	76192	76192					0.017937928459105024
RSLDADSFHYH	11	Unmodified	_RSLDADSFHYH_					0	0	0		ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.263671875	3	449.874064	1346.60036	0.25576	0.00011506	1.046	0.00047055	1.3017	0.00058561	449.87498944554085	61.399	0.10713	61.173	61.118	61.225	-0.22663					4	2	2	0	0	0	0.024816	1	7076	7076		27.644	2.5179	1	36145			69921	2632	49016	49095	76193	76193					-0.059073621070865556
RSLDGLLKYR	10	Unmodified	_RSLDGLLKYR_					0	0	0			REV__ENSG00000113249|ENST00000523175|HAVCR1	REV__ENSG00000113249|ENST00000523175|HAVCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.753173828125	3	407.575178	1219.70371	1.1322	0.00046146	-1.1915	-0.00048562	-0.059273	-2.4158E-05	407.5745851922751	44.834	1.1286	44.871	44.241	45.37	0.0369					83	32	4	0	0	0	0.03519	1	4321	4321		10.104	0	1	1122300	+		69922	22051	49017	49096	76194	76194					0.10264170071354783
RSLDSVVPT	9	Unmodified	_RSLDSVVPT_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43;nc|ENSG00000108375|Q68DV7-3|RNF43;nc|ENSG00000108375|Q68DV7-2|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.75872802734375	2	487.269281	972.52401	-0.26134	-0.00012734	-2.0763	-0.0010117	-2.3376	-0.001139	487.26953399007243	75.458	0.37032	75.199	74.949	75.319	-0.25866					12	8	2	0	0	0	0.024021	1	8942	8942		58.782	8.7574	1	65824			69923	2892	49018	49097	76195	76195					0.03664866063570571
RSLEEIGI	8	Unmodified	_RSLEEIGI_					0	0	0		ENSG00000114631|ENST00000342480|PODXL2;nc|ENSG00000114631|Q9NZ53-2|PODXL2	ENSG00000114631|ENST00000342480|PODXL2	ENSG00000114631|ENST00000342480|PODXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2394104003906	2	458.758549	915.502546	-0.18475	-8.4757E-05	-1.008	-0.00046244	-1.1928	-0.0005472	458.75789028387175	33.633	0.87598	33.633	33.174	34.05	0					23	23	2	0	0	0	0.027866	1	2431	2431		25.45	0	1	222500			69924	3371	49019	49098	76196	76196					0.04141481034866956
RSLEFAFEF	9	Unmodified	_RSLEFAFEF_					0	0	0			REV__nc|ENSG00000138002|Q9UG01-2|IFT172	REV__nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.2860717773438	2	573.284931	1144.55531	-0.26162	-0.00014998	3.1952	0.0018317	2.9335	0.0016818	573.286727820033	64.276	0.92892	64.014	63.684	64.613	-0.2626					51	24	3	0	0	0	0.56934	1	7539	7539		54.776	6.8168	1	1174800	+		69925	23806	49020	49099	76197	76197					-0.011185609023414145
RSLEFAFEF	9	Unmodified	_RSLEFAFEF_					0	0	0			REV__nc|ENSG00000138002|Q9UG01-2|IFT172	REV__nc|ENSG00000138002|Q9UG01-2|IFT172	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	573.284931	1144.55531	0.29754	0.00017058	3.0094	0.0017253	3.307	0.0018958	573.2864256857	64.135	0.83268	64.135	63.666	64.499	0	0.032613	0.00025629	NaN	54.776	51	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1169700	+		69926	23806	49020	49099							-0.011185609023414145
RSLEKAAF	8	Unmodified	_RSLEKAAF_					0	0	0			REV__ENSG00000255112|ENST00000526991|CHMP1B	REV__ENSG00000255112|ENST00000526991|CHMP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2612609863281	2	461.261259	920.507966	-0.39292	-0.00018124	-2.7399	-0.0012638	-3.1328	-0.0014451	461.2588651321322	28.268	0.21292	28.264	28.117	28.33	-0.0042019					6	4	2	0	0	0	0.027866	1	1601	1601		26.693	0	1	33334	+		69927	29061	49021	49100	76198	76198					0.04453204617323081
RSLELSSL	8	Unmodified	_RSLELSSL_					0	0	0		nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	nc|ENSG00000100330|Q13615-3|MTMR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.266845703125	2	452.758549	903.502546	-0.35356	-0.00016008	0.92766	0.00042001	0.5741	0.00025993	452.7589127273825	25.469	0.62683	25.243	25.018	25.645	-0.22683					27	14	3	0	0	0	0.027866	1	1230	1230		27.882	0	1	161180			69928	2181	49022	49101	76199	76199					0.04693481034871638
RSLESLHSF	9	Unmodified	_RSLESLHSF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2800903320312	2	538.28018	1074.54581	-0.38047	-0.0002048	0.28549	0.00015368	-0.094975	-5.1123E-05	538.2801689296648	42.36	0.95587	42.237	41.888	42.844	-0.12299					63	24	4	0	0	0	0.17845	2	3804	3804;3830		93.143	5.4468	1	2352200			69929	18548	49023	49102	76200;76201	76200					0.011516708121462216
RSLESLHSF	9	Unmodified	_RSLESLHSF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.280029296875	2	538.28018	1074.54581	-0.72071	-0.00038795	0.58176	0.00031315	-0.13895	-7.4795E-05	538.2803672470545	42.513	0.9166	42.281	42.042	42.959	-0.23186					57	23	4	0	0	0	0.053401	1	3829	3829		127.46	10.558	1	2590400			69930	18548	49023	49102	76202	76202					0.011516708121462216
RSLESLHSF	9	Unmodified	_RSLESLHSF_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2791137695312	2	538.28018	1074.54581	-1.1383	-0.00061271	0.78788	0.0004241	-0.35041	-0.00018862	538.2804456611786	42.58	0.88148	42.354	42.07	42.951	-0.22608					55	22	4	0	0	0	0.1158	2	3834	3823;3834		107.01	16.638	1	2879600			69931	18548	49023	49102	76203;76204	76204					0.011516708121462216
RSLETENW	8	Unmodified	_RSLETENW_					0	0	0		ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000505048.1_1_5:108924266-108924368:+|nuORF;ENST00000508931.1_1_4:40022141-40022315:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7484741210938	2	517.748713	1033.48287	-0.11556	-5.9831E-05	0.391	0.00020244	0.27544	0.00014261	517.7487902945214	35.704	0.52359	35.491	35.193	35.717	-0.21246					24	13	2	0	0	0	0.6248	1	2730	2730		73.975	2.0973	1	2235100			69932	14339	49024	49103	76205	76205					-0.03252894975912568
RSLETENW	8	Unmodified	_RSLETENW_					0	0	0		ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000505048.1_1_5:108924266-108924368:+|nuORF;ENST00000508931.1_1_4:40022141-40022315:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	517.748713	1033.48287	-0.78172	-0.00040474	0.85527	0.00044281	0.073544	3.8077E-05	517.7491375890137	35.78	0.43929	35.575	35.346	35.786	-0.20518	0.074342	0.00034324	NaN	73.975	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2070800			69933	14339	49024	49103							-0.03252894975912568
RSLETENW	8	Unmodified	_RSLETENW_					0	0	0		ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000505048.1_1_5:108924266-108924368:+|nuORF;ENST00000508931.1_1_4:40022141-40022315:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	ENST00000439811.1_1_6:112683280-112683757:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	517.748713	1033.48287	-0.23961	-0.00012406	0.4931	0.0002553	0.2535	0.00013125	517.7489766143084	35.622	0.48058	35.435	35.14	35.621	-0.18675	-0.06518	-3.1782E-05	NaN	73.975	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1756100			69934	14339	49024	49103							-0.03252894975912568
RSLEVSYLA	9	Unmodified	_RSLEVSYLA_					0	0	0		nc|ENSG00000211898|P01880|IGHD	nc|ENSG00000211898|P01880|IGHD	nc|ENSG00000211898|P01880|IGHD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2564086914062	2	519.284931	1036.55531	0.47927	0.00024888	-0.25685	-0.00013338	0.22242	0.0001155	519.2846180432582	50.886	0.48289	50.61	50.37	50.853	-0.27643					30	12	3	0	0	0	0.024495	1	5159	5159		26.693	12.918	1	1329900			69935	18704	49025	49104	76206	76206					0.03849439097666618
RSLFDVLKEKS	11	Unmodified	_RSLFDVLKEKS_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3;REV__ENST00000491769.1_1_2:238233419-238250825:-|nuORF	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.7880554199219	3	441.253993	1320.74015	-0.48774	-0.00021522	1.2573	0.00055479	0.76956	0.00033957	441.2545634272387	43.308	0.63783	43.071	42.679	43.317	-0.23737					38	16	4	0	0	0	0.024735	1	3963	3963		27.644	11.723	1	242210	+		69936	25558;33731	49026	49105	76207	76207					0.09261002177413502
RSLFLTLMVLL	11	Unmodified	_RSLFLTLMVLL_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.2115173339844	3	435.936948	1304.78901	-0.0088685	-3.8661E-06	3.2223	0.0014047	3.2134	0.0014009	435.93832816475793	42.864	0.5094	42.864	42.715	43.224	0					21	13	2	0	0	0	0.024821	1	3968	3968		6.001	0	1	113120			69937	5400	49027	49106	76208	76208					0.14881199212823049
RSLGCSGPY	9	Unmodified	_RSLGCSGPY_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7644348144531	2	470.221277	938.428001	0.024404	1.1475E-05	2.3865	0.0011222	2.411	0.0011337	470.22152653119423	31.209	1.5593	31.221	30.584	32.144	0.011797					53	37	3	0	0	0	0.024436	1	2141	2141		16.473	4.2663	1	100050	+		69938	26342	49028	49107	76209	76209					-0.04367605048173573
RSLGMQTM	8	Oxidation (M)	_RSLGMQTM(Oxidation (M))_		RSLGMQTM(1)		RSLGM(-67)QTM(67)	0	0	1			REV__ITPR2|p.V932G|1|0.13|ENSG00000123104|chr12:26632005-26632005|A/C|missense_variant	REV__ITPR2|p.V932G|1|0.13|ENSG00000123104|chr12:26632005-26632005|A/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.22149658203125	2	470.222962	938.431372	0.090916	4.2751E-05	-2.967	-0.0013952	-2.8761	-0.0013524	470.2214480358267	68.405	1.6414	68.144	67.774	69.415	-0.26166					103	39	4	0	0	0	0.56067	1	7923	7923		79.939	8.5613	2	5075400	+		69939	36163	49029	49108	76210	76210		959			-0.04030678265792176
RSLGMQTM	8	Oxidation (M)	_RSLGMQTM(Oxidation (M))_		RSLGMQTM(1)		RSLGM(-69)QTM(69)	0	0	1			REV__ITPR2|p.V932G|1|0.13|ENSG00000123104|chr12:26632005-26632005|A/C|missense_variant	REV__ITPR2|p.V932G|1|0.13|ENSG00000123104|chr12:26632005-26632005|A/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2214050292969	2	470.222962	938.431372	0.15164	7.1305E-05	-2.9614	-0.0013925	-2.8098	-0.0013212	470.2214640361385	68.388	1.3007	68.158	67.794	69.095	-0.23047					85	31	4	0	0	0	0.44658	1	7914	7914		90.777	10.837	2	4529000	+		69940	36163	49029	49108	76211	76211		959			-0.04030678265792176
RSLGRRRQ	8	Unmodified	_RSLGRRRQ_					0	0	0			REV__ENST00000461434.1_1_1:151227258-151234901:+|nuORF	REV__ENST00000461434.1_1_1:151227258-151234901:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2879028320312	2	514.812848	1027.61114	-0.46448	-0.00023912	3.2522	0.0016743	2.7878	0.0014352	514.8142844336253	34.685	0.71219	34.498	34.199	34.911	-0.18675					34	17	3	0	0	0	0.027866	1	2517	2517		44.117	6.3053	1	724250	+		69941	32876	49030	49109	76212	76212					0.0984412984851133
RSLGVALIVA	10	Unmodified	_RSLGVALIVA_					0	0	0			REV__ENSG00000170075|ENST00000367282|GPR37L1	REV__ENSG00000170075|ENST00000367282|GPR37L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.8310852050781	2	499.821484	997.628415	-0.70561	-0.00035268	0.13332	6.6637E-05	-0.57228	-0.00028604	499.8213328949399	44.852	0.62733	44.599	44.354	44.981	-0.25252					38	15	4	0	0	0	0.03519	1	4173	4173		19.997	4.355	1	844540	+		69942	26432	49031	49110	76213	76213					0.1295061261095043
RSLGVHLSF	9	Unmodified	_RSLGVHLSF_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000528072.1_1_11:47198065-47198404:-|nuORF;ENST00000493606.1_1_22:43243518-43253221:-|nuORF	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2873229980469	2	508.287808	1014.56106	-0.19113	-9.7147E-05	0.049452	2.5136E-05	-0.14167	-7.2011E-05	508.28766562557246	52.615	1.1719	52.488	52.157	53.329	-0.12705					47	29	2	0	0	0	0.37611	1	5474	5474		67.494	4.1874	1	2367300			69943	10794	49032	49111	76214	76214					0.05436582399988765
RSLGVHLSF	9	Unmodified	_RSLGVHLSF_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000528072.1_1_11:47198065-47198404:-|nuORF;ENST00000493606.1_1_22:43243518-43253221:-|nuORF	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2884216308594	2	508.287808	1014.56106	0.36012	0.00018304	-0.61737	-0.0003138	-0.25725	-0.00013075	508.2873679415835	52.919	1.1511	52.66	52.326	53.477	-0.25839					47	29	2	0	0	0	0.37611	1	5505	5505		67.494	4.1874	1	2406100			69944	10794	49032	49111	76215	76215					0.05436582399988765
RSLHDRKW	8	Unmodified	_RSLHDRKW_					0	0	0			REV__ENSG00000134489|ENST00000256906|HRH4	REV__ENSG00000134489|ENST00000256906|HRH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2962646484375	2	549.301781	1096.58901	-0.92099	-0.0005059	-1.2618	-0.00069311	-2.1828	-0.001199	549.3007373514572	21.06	0.58737	20.97	20.766	21.354	-0.090092					16	11	2	0	0	0	0.027866	1	638	638		21.96	0	1	21832	+		69945	23457	49033	49112	76216	76216					0.04457905380081684
RSLHLAEPL	9	Unmodified	_RSLHLAEPL_					0	0	0			REV__KMT2D|p.G4255Lfs*75|1|0.17|ENSG00000167548|chr12:49031932-49031942|CCCAGGAGGCC/-|frameshift_variant;REV__nc|ENSG00000167548|O14686-3|KMT2D;REV__KMT2D|p.K1466Qfs*25|1|0.1|ENSG00000167548|chr12:49046631-49046632|-/G|frameshift_variant;REV__KMT2D|p.S654Pfs*276|1|0.42|ENSG00000167548|chr12:49051723-49051723|A/-|frameshift_variant	REV__nc|ENSG00000167548|O14686-3|KMT2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7879028320312	2	518.300916	1034.58728	-0.4108	-0.00021292	2.2878	0.0011857	1.877	0.00097283	518.3009616685143	53.472	0.20989	53.472	53.372	53.582	0					7	5	2	0	0	0	0.024397	1	5794	5794		31.53	0	1	70384	+		69946	36895;36190;36191;36192	49034	49113	76217	76217					0.07136851571453917
RSLIHRKV	8	Unmodified	_RSLIHRKV_					0	0	0			REV__ENSG00000163083|ENST00000295228|INHBB	REV__ENSG00000163083|ENST00000295228|INHBB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.81597900390625	2	504.824892	1007.63523	-0.06508	-3.2854E-05	2.5858	0.0013054	2.5208	0.0012725	504.8260454219346	67.976	0.36137	67.737	67.589	67.951	-0.23814					14	8	2	0	0	0	0.027866	1	7854	7854		25.45	1.2474	1	97596	+		69947	25530	49035	49114	76218	76218					0.13171970282178336
RSLILSSRHGI	11	Unmodified	_RSLILSSRHGI_					0	0	0		nc|ENSG00000141956|P57071-5|PRDM15;PRDM15|p.T1394Yfs*4|1|0.33|ENSG00000141956|chr21:41801584-41801585|-/A|frameshift_variant;ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	nc|ENSG00000141956|P57071-5|PRDM15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8690185546875	2	619.870028	1237.7255	-1.6623	-0.0010304	0.49102	0.00030437	-1.1713	-0.00072605	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	1.0429	1	11410	11410		27.047	4.4677	1	1925500			69948	5528	49036	49115	76219	76219					0.11614974819917734
RSLKIGRFS	9	Unmodified	_RSLKIGRFS_					0	0	0			REV__nc|ENSG00000186812|Q8NF99-2|ZNF397	REV__nc|ENSG00000186812|Q8NF99-2|ZNF397	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7764282226562	2	532.322183	1062.62981	-0.83554	-0.00044477	3.2336	0.0017213	2.3981	0.0012765	532.3236609035982	82.285	0.89529	82.285	82.113	83.008	0					26	20	2	0	0	0	0.024418	1	10358	10358		37.812	0	1	144440	+		69949	37030	49037	49116	76220	76220					0.101002466996988
RSLKKEMLS	9	Unmodified	_RSLKKEMLS_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3209228515625	2	546.315709	1090.61686	-0.96866	-0.00052919	4.3437	0.002373	3.375	0.0018438	546.3183460299174	66.865	0.5843	66.889	66.685	67.27	0.023903					21	13	2	0	0	0	0.024477	1	7855	7855		27.882	11.409	1	266900	+		69950	20075	49038	49117	76221	76221					0.0751804752528642
RSLKLAYTL	9	Unmodified	_RSLKLAYTL_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7905883789062	2	532.826766	1063.63898	-0.33743	-0.00017979	0.88651	0.00047236	0.54908	0.00029256	532.827282721113	64.441	0.59241	64.441	64.097	64.69	0					21	15	2	0	0	0	0.02435	1	7586	7586		26.693	0	1	179310			69951	6804;1331	49039	49118	76222	76222					0.1097059526537123
RSLKLLNL	8	Unmodified	_RSLKLLNL_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19;LRRC19|p.G154C|1|0.29|ENSG00000184434|chr9:26997863-26997863|C/A|missense_variant	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26666259765625	2	478.816202	955.617851	-1.3246	-0.00063424	0.82623	0.00039561	-0.49836	-0.00023862	478.81652943101204	49.136	0.99909	49.21	48.913	49.912	0.074196					62	26	4	0	0	0	0.027866	1	4976	4976		45.972	0	1	3840300			69952	9338	49040	49119	76223	76223					0.13826629956508896
RSLKLLNL	8	Unmodified	_RSLKLLNL_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19;LRRC19|p.G154C|1|0.29|ENSG00000184434|chr9:26997863-26997863|C/A|missense_variant	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	478.816202	955.617851	0.97449	0.0004666	-1.5682	-0.00075086	-0.59366	-0.00028425	478.8153771282043	49.232	0.90802	49.232	48.934	49.842	0	-0.014619	-0.00096362	NaN	37.812	60	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4253500			69953	9338	49040	49119							0.13826629956508896
RSLKLLRW	8	Unmodified	_RSLKLLRW_					0	0	0			REV__nc|ENSG00000204267|Q03519-2|TAP2	REV__nc|ENSG00000204267|Q03519-2|TAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.305419921875	2	536.342918	1070.67128	-0.32413	-0.00017384	1.7017	0.00091269	1.3776	0.00073884	536.344286428013	48.027	0.34334	47.841	47.635	47.978	-0.18684					11	8	2	0	0	0	0.027866	1	4714	4714		31.955	4.0726	1	87567	+		69954	28581	49041	49120	76224	76224					0.1387742745905598
RSLKQLAR	8	Unmodified	_RSLKQLAR_					0	0	0			REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	REV__ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3087158203125	2	486.309075	970.603597	-1.1168	-0.00054312	0.51429	0.00025011	-0.60253	-0.00029302	486.3092469418298	20.397	1.0689	20.397	19.979	21.048	0					49	21	4	0	0	0	0.83003	1	534	534		56.721	7.2795	1	1004000	+		69955	25068	49042	49121	76225	76225					0.11711977528227635
RSLKWEAF	8	Unmodified	_RSLKWEAF_					0	0	0			REV__ENST00000565644.5_1_16:87865977-87866070:-|nuORF	REV__ENST00000565644.5_1_16:87865977-87866070:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.3515625	2	518.782359	1035.55016	0.42632	0.00022117	-1.0784	-0.00055946	-0.6521	-0.0003383	518.7813724974316	81.352	0.61889	81.158	80.8	81.419	-0.19333					21	14	2	0	0	0	0.027866	1	9766	9766		23.042	0	1	156000	+		69956	35282	49043	49122	76226	76226					0.033811800256899005
RSLLELLH	8	Unmodified	_RSLLELLH_					0	0	0		ENSG00000168904|ENST00000301981|LRRC28;ENST00000558890.5_1_15:99872165-99903471:+|nuORF;nc|ENSG00000168904|Q86X40-3|LRRC28	ENSG00000168904|ENST00000301981|LRRC28	ENSG00000168904|ENST00000301981|LRRC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.795654296875	2	490.798009	979.581465	-0.54523	-0.0002676	4.0074	0.0019668	3.4622	0.0016992	490.79979703809454	48.028	0.88748	47.875	47.441	48.329	-0.15301					46	26	2	0	0	0	0.027866	1	4865	4865		23.042	9.2672	1	1011300			69957	7878	49044	49123	76227	76227					0.09085753059810031
RSLLEQLVQ	9	Unmodified	_RSLLEQLVQ_					0	0	0			REV__nc|ENSG00000116147|Q92752-2|TNR	REV__nc|ENSG00000116147|Q92752-2|TNR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3150634765625	2	543.319306	1084.62406	-0.97313	-0.00052872	0.64971	0.000353	-0.32342	-0.00017572	543.3196178121341	42.439	0.37273	42.209	41.997	42.37	-0.2303					17	9	2	0	0	0	0.024397	1	3791	3791		39.253	5.0803	1	330390	+		69958	22261	49045	49124	76228	76228					0.08513103397376653
RSLLFDKMP	9	Unmodified	_RSLLFDKMP_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8182983398438	2	553.804977	1105.5954	-1.3205	-0.00073132	-2.4804	-0.0013737	-3.8009	-0.002105	553.8031204808884	62.744	0.64172	62.505	62.419	63.06	-0.23926					20	15	2	0	0	0	0.024457	1	7296	7296		21.96	1.9631	1	947440			69959	6961	49046	49125	76229	76229					0.046826624965888186
RSLLGLGGL	9	Unmodified	_RSLLGLGGL_					0	0	0		ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.7458190917969	2	443.279452	884.544351	-0.2199	-9.7479E-05	0.10774	4.7757E-05	-0.11217	-4.9722E-05	443.27926877304145	24.449	0.59828	24.274	24.089	24.688	-0.17484					17	13	2	0	0	0	0.024487	1	1037	1037		17.365	0	1	132800			69960	6251	49047	49126	76230	76230					0.09746081514060734
RSLLGLGGL	9	Unmodified	_RSLLGLGGL_					0	0	0		ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.279452	884.544351	-0.44127	-0.00019561	-0.4349	-0.00019278	-0.87617	-0.00038839	443.27891432346377	24.731	0.60656	24.516	24.336	24.943	-0.2151	0.12046	0.00072401	NaN	45.952	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54537			69961	6251	49047	49126							0.09746081514060734
RSLLGLGGL	9	Unmodified	_RSLLGLGGL_					0	0	0		ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.279452	884.544351	2.3656	0.0010486	-2.2917	-0.0010159	0.073945	3.2778E-05	443.27825464848553	24.577	0.52526	24.396	24.198	24.723	-0.18089	0.00065066	-0.00092216	NaN	45.952	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95774			69962	6251	49047	49126							0.09746081514060734
RSLLIQLKV	9	Unmodified	_RSLLIQLKV_					0	0	0		HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|33|2|anti-sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|33|2|anti-sense	HERVH-int_dup115|chr1:68390306-68390968:+|6.484320975917488|0.0623013761462208|6.7|490.0|33|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2605590820312	2	535.358234	1068.70191	-1.2699	-0.00067983	1.3199	0.0007066	0.049997	2.6766E-05	535.3587698369885	55.674	0.26017	55.458	55.268	55.528	-0.21551					9	6	2	0	0	0	0.024541	1	5975	5975		15.642	0	1	97559			69963	17717	49048	49127	76231	76231					0.1703116105340996
RSLLKKNL	8	Unmodified	_RSLLKKNL_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.3088073730469	2	486.321651	970.62875	0.72348	0.00035185	1.2923	0.00062848	2.0158	0.00098033	486.32271325927945	20.455	0.19686	20.524	20.366	20.563	0.068901					5	3	2	0	0	0	0.027866	1	488	488		57.811	0	1	9788.7	+		69964	25140	49049	49128	76232	76232					0.14226032330805083
RSLLLLAA	8	Unmodified	_RSLLLLAA_					0	0	0			REV__ENSG00000163286|ENST00000295453|ALPG	REV__ENSG00000163286|ENST00000295453|ALPG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.26171875	2	428.78437	855.554188	0.47692	0.0002045	-3.8826	-0.0016648	-3.4057	-0.0014603	428.7827800150168	89.971	0.36921	89.984	89.674	90.043	0.013443					11	8	2	0	0	0	0.027866	1	11272	11272		6.7355	0	1	275480	+		69965	25549	49050	49129	76233	76233					0.12063269519410369
RSLLLSEF	8	Unmodified	_RSLLLSEF_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.77667236328125	2	482.776742	963.538931	0.52381	0.00025288	-0.19218	-9.2781E-05	0.33163	0.0001601	482.776321729423	97.206	1.4382	97.215	96.751	98.189	0.0089111					62	32	3	0	0	0	0.89627	1	12382	12382		51.335	3.6781	1	987190	+		69966	20293	49051	49130	76234	76234					0.05570357931560466
RSLLMQSR	8	Oxidation (M)	_RSLLM(Oxidation (M))QSR_		RSLLM(1)QSR		RSLLM(61)QSR	0	0	1			REV__ENSG00000184117|ENST00000216121|NIPSNAP1	REV__ENSG00000184117|ENST00000216121|NIPSNAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.77886962890625	2	503.776751	1005.53895	-0.54807	-0.00027611	4.11	0.0020705	3.562	0.0017944	503.7786342981133	24.082	2.4579	24.082	23.321	25.779	0					127	57	3	0	0	0	0.77775	1	1011	1011		60.972	8.6728	1	878790	+		69967	27637	49052	49131	76235	76235		819			0.0364003465992937
RSLLPADCQI	10	Unmodified	_RSLLPADCQI_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.2976684570312	2	558.297516	1114.58048	-0.86668	-0.00048387	1.213	0.0006772	0.3463	0.00019334	558.2981756758212	58.101	0.46533	57.926	57.684	58.149	-0.1749					24	12	3	0	0	0	0.47249	1	6542	6542		91.265	0.89541	1	1243300			69968	10047	49053	49132	76236	76236					0.02777170628564818
RSLLPADCQI	10	Unmodified	_RSLLPADCQI_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.297516	1114.58048	0.075323	4.2053E-05	0.076421	4.2666E-05	0.15174	8.4718E-05	558.2974491385279	57.855	0.48791	57.855	57.603	58.091	0	-0.010513	-0.0010134	NaN	91.265	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1587800			69969	10047	49053	49132							0.02777170628564818
RSLLPADCQI	10	Unmodified	_RSLLPADCQI_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.297516	1114.58048	-0.51391	-0.00028692	0.85776	0.00047889	0.34385	0.00019197	558.2978616514644	57.719	0.5838	57.815	57.608	58.192	0.09531	-0.050454	-0.00014095	NaN	91.265	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1350100			69970	10047	49053	49132							0.02777170628564818
RSLLPAGT	8	Unmodified	_RSLLPAGT_					0	0	0		ENST00000338797.10_1_19:18889924-18889990:+|nuORF	ENST00000338797.10_1_19:18889924-18889990:+|nuORF	ENST00000338797.10_1_19:18889924-18889990:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.69598388671875	2	407.742702	813.470852	0.37696	0.0001537	-0.75344	-0.00030721	-0.37648	-0.00015351	407.74228789904197	36.895	0.51759	36.702	36.294	36.812	-0.193					15	12	2	0	0	0	0.027866	1	2900	2900		16.473	8.7829	1	37185			69971	12449	49054	49133	76237	76237					0.05665533071578466
RSLLPAGT	8	Unmodified	_RSLLPAGT_					0	0	0		ENST00000338797.10_1_19:18889924-18889990:+|nuORF	ENST00000338797.10_1_19:18889924-18889990:+|nuORF	ENST00000338797.10_1_19:18889924-18889990:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	407.742702	813.470852	0.92463	0.00037701	-1.2004	-0.00048945	-0.27577	-0.00011244	407.7423803188345	36.634	0.6616	36.672	36.301	36.963	0.038044	0.086281	-0.00020298	NaN	16.473	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126060			69972	12449	49054	49133							0.05665533071578466
RSLLPAGT	8	Unmodified	_RSLLPAGT_					0	0	0		ENST00000338797.10_1_19:18889924-18889990:+|nuORF	ENST00000338797.10_1_19:18889924-18889990:+|nuORF	ENST00000338797.10_1_19:18889924-18889990:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	407.742702	813.470852	1.5201	0.0006198	-1.5919	-0.00064907	-0.071794	-2.9273E-05	407.741903090276	36.665	0.60312	36.458	36.084	36.687	-0.20683	-0.12751	-0.00052221	NaN	16.473	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60220			69973	12449	49054	49133							0.05665533071578466
RSLMAAESSF	10	Unmodified	_RSLMAAESSF_					0	0	0			REV__ENST00000308330.2_1_12:65640181-65640286:+|nuORF	REV__ENST00000308330.2_1_12:65640181-65640286:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2982788085938	2	549.766049	1097.51754	0.54885	0.00030174	-3.9608	-0.0021775	-3.412	-0.0018758	549.7637805419657	54.484	0.88783	54.278	54.016	54.904	-0.20613					62	23	4	0	0	0	0.03519	1	5813	5813		30.318	4.7437	1	2046900	+		69974	30151	49055	49134	76238	76238					-0.02731395159457861
RSLPALPASV	10	Unmodified	_RSLPALPASV_					0	0	0		ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.31927490234375	2	505.803291	1009.59203	-0.44742	-0.00022631	-0.015583	-7.882E-06	-0.46301	-0.00023419	505.8035234326093	53.214	0.39899	53.214	52.938	53.337	0					16	10	2	0	0	0	0.03519	1	5713	5713		28.081	3.5623	1	80967			69975	17490	49056	49135	76239	76239					0.08761735714222141
RSLPEIWTL	9	Unmodified	_RSLPEIWTL_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.816162109375	2	557.816399	1113.61824	-0.18305	-0.00010211	-0.30555	-0.00017044	-0.4886	-0.00027255	557.8162459789396	75.432	0.73364	75.159	74.849	75.582	-0.27266					44	17	3	0	0	0	0.16638	1	8914	8914		95.815	27.028	1	1262500			69976	1416	49057	49136	76240	76240					0.06598004885699993
RSLPEIWTL	9	Unmodified	_RSLPEIWTL_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.8162231445312	2	557.816399	1113.61824	-0.31036	-0.00017312	-0.18924	-0.00010556	-0.4996	-0.00027868	557.8162399401768	75.421	0.73624	75.162	74.821	75.557	-0.25866					47	17	5	0	0	0	0.30449	2	8919	8919;8930		75.043	5.4157	1	1278800			69977	1416	49057	49136	76241;76242	76241					0.06598004885699993
RSLPEIWTL	9	Unmodified	_RSLPEIWTL_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.8165283203125	2	557.816399	1113.61824	0.060808	3.3919E-05	-0.67704	-0.00037766	-0.61623	-0.00034374	557.815990952136	75.227	0.69338	75.052	74.774	75.468	-0.17548					46	16	4	0	0	0	0.16638	2	8886	8886;8897		95.815	20.772	1	1252900			69978	1416	49057	49136	76243;76244	76243					0.06598004885699993
RSLPEKPDI	9	Unmodified	_RSLPEKPDI_					0	0	0		ENSG00000145757|ENST00000274432|SPATA9;nc|ENSG00000145757|Q9BWV2-2|SPATA9	ENSG00000145757|ENST00000274432|SPATA9	ENSG00000145757|ENST00000274432|SPATA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.76953125	2	527.798206	1053.58186	-0.72189	-0.00038101	-1.2456	-0.00065744	-1.9675	-0.0010385	528.2990369943257	53.528	0.10653	53.528	53.439	53.545	0					4	2	2	0	0	0	0.024288	1	5787	5787		52.937	0	1	46416			69979	5837	49058	49137	76245	76245					0.057211279889770594
RSLPENIQF	9	Unmodified	_RSLPENIQF_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.7966918945312	2	552.29583	1102.57711	-0.24875	-0.00013739	2.0935	0.0011562	1.8448	0.0010189	552.2968751512461	58.058	0.92318	57.88	57.596	58.519	-0.17775					41	22	2	0	0	0	0.20652	2	6367	6367;6375		88.177	17.361	1	1921700			69980	1253	49059	49138	76246;76247	76246					0.029922438462108403
RSLPENIQF	9	Unmodified	_RSLPENIQF_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.2958374023438	2	552.29583	1102.57711	-0.059293	-3.2747E-05	0.93703	0.00051752	0.87773	0.00048477	552.2964996231489	57.96	0.77915	57.77	57.52	58.299	-0.19018					33	19	3	0	0	0	0.18994	2	6355	6355;6364		90.601	20.973	1	2402000			69981	1253	49059	49138	76248;76249	76248					0.029922438462108403
RSLPENIQF	9	Unmodified	_RSLPENIQF_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.2949829101562	2	552.29583	1102.57711	0.11692	6.4573E-05	1.8317	0.0010116	1.9486	0.0010762	552.2968635728283	58.097	0.72938	57.864	57.74	58.469	-0.23363					32	17	2	0	0	0	0.15388	2	6368	6358;6368		98.582	33.117	1	1447400			69982	1253	49059	49138	76250;76251	76251					0.029922438462108403
RSLPLATTVQ	10	Unmodified	_RSLPLATTVQ_					0	0	0			REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF	REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7947387695312	2	543.319306	1084.62406	-0.26929	-0.00014631	-1.009	-0.00054821	-1.2783	-0.00069452	543.3191587915733	39.529	0.77368	39.529	39.288	40.062	0					39	21	2	0	0	0	0.03519	1	3491	3491		42.864	8.6917	1	1256700	+		69983	34596	49060	49139	76252	76252					0.08513103397353916
RSLPMLFR	8	Unmodified	_RSLPMLFR_					0	0	0		ENST00000555253.1_1_14:75413434-75413704:-|nuORF;nc|ENSG00000119630|P49763|PGF;nc|ENSG00000119630|P49763-4|PGF	ENST00000555253.1_1_14:75413434-75413704:-|nuORF	ENST00000555253.1_1_14:75413434-75413704:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.3107604980469	2	510.294579	1018.57461	0.41815	0.00021338	-1.9393	-0.00098961	-1.5211	-0.00077622	510.2938396979698	77.192	0.2061	76.927	76.85	77.056	-0.2654					9	5	2	0	0	0	0.027866	1	9163	9163		31.955	0	1	234900			69984	16679	49061	49140	76253	76253					0.06606116907585147
RSLPSSPEL	9	Unmodified	_RSLPSSPEL_					0	0	0		ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30084228515625	2	493.269281	984.52401	-0.057955	-2.8587E-05	-1.5899	-0.00078424	-1.6478	-0.00081283	493.2683771844228	56.58	0.40063	56.58	56.277	56.678	0					20	10	3	0	0	0	0.020937	1	6304	6304		87.696	20.203	1	189310			69985	2825	49062	49141	76254	76254					0.031128660635772576
RSLQCPSSHR	10	Unmodified	_RSLQCPSSHR_					0	0	0		ENST00000303407.11_3_9:136896057-136896471:-|nuORF	ENST00000303407.11_3_9:136896057-136896471:-|nuORF	ENST00000303407.11_3_9:136896057-136896471:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2669067382812	2	585.793463	1169.57237	-0.50645	-0.00029668	-0.58529	-0.00034286	-1.0917	-0.00063953	585.7930975827891	57.193	0.31731	56.991	56.747	57.064	-0.20208					22	8	4	0	0	0	0.03519	1	6214	6214		36.447	0	1	483070			69986	11970	49063	49142	76255	76255					-0.005629635681998479
RSLQFQAPL	9	Unmodified	_RSLQFQAPL_					0	0	0			REV__ENST00000550703.6_1_12:111057727-111064210:+|nuORF	REV__ENST00000550703.6_1_12:111057727-111064210:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2905883789062	2	530.300916	1058.58728	-0.20255	-0.00010741	-1.2279	-0.00065113	-1.4304	-0.00075855	530.2992680516888	55.194	0.52127	55.194	54.869	55.39	0					22	14	2	0	0	0	0.02435	1	6106	6106		42.396	0	1	214120	+		69987	34914	49064	49143	76256	76256					0.0603285157146729
RSLQGPNP	8	Unmodified	_RSLQGPNP_					0	0	0			REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1	REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.7765808105469	2	434.735409	867.456264	0.29765	0.0001294	-2.0101	-0.00087388	-1.7125	-0.00074448	434.7349731193548	30.704	0.21284	30.555	30.429	30.642	-0.14952					6	4	2	0	0	0	0.027866	1	1950	1950		18.324	0	1	11793	+		69988	20016	49065	49144	76257	76257					0.017234609234265008
RSLQPPGI	8	Unmodified	_RSLQPPGI_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.77978515625	2	434.255977	866.497401	0.44276	0.00019227	0.22197	9.6392E-05	0.66473	0.00028866	434.2557727964431	40.129	0.96029	40.129	39.696	40.657	0					43	26	2	0	0	0	0.027866	1	3526	3526		21.96	6.3181	1	227870			69989	1396	49066	49145	76258	76258					0.05881221962908967
RSLQPPGI	8	Unmodified	_RSLQPPGI_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7797546386719	2	434.255977	866.497401	-0.33465	-0.00014533	0.73659	0.00031987	0.40193	0.00017454	434.2560437636956	40.343	0.85112	40.366	40.013	40.864	0.023006					34	23	2	0	0	0	0.027866	1	3504	3504		24.203	6.8378	1	279630			69990	1396	49066	49145	76259	76259					0.05881221962908967
RSLRGLPA	8	Unmodified	_RSLRGLPA_					0	0	0			REV__ENST00000556818.1_1_14:64970443-64970746:+|nuORF	REV__ENST00000556818.1_1_14:64970443-64970746:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.26934814453125	2	435.269419	868.524284	-0.37531	-0.00016336	-0.20705	-9.0124E-05	-0.58236	-0.00025348	435.26935969048617	23.308	1.8104	23.247	22.709	24.519	-0.060862					93	41	4	0	0	0	1.0574	1	927	927		23.042	0	1	10850000	+		69991	35046	49067	49146	76260	76260					0.08476330574080748
RSLRGPAALS	10	Unmodified	_RSLRGPAALS_					0	0	0			REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.3038330078125	2	514.30399	1026.59343	-0.62586	-0.00032188	0.11221	5.7712E-05	-0.51365	-0.00026417	514.3039583290223	29.756	0.68835	29.763	29.392	30.08	0.0069504					47	16	4	0	0	0	1.0236	1	1833	1833		42.864	1.4377	1	2047000	+		69992	26267	49068	49147	76261	76261					0.0811936980298924
RSLRHNVRR	9	Unmodified	_RSLRHNVRR_					0	0	0		BEND2|p.D764N|1|0.43|ENSG00000177324|chrX:18165119-18165119|C/T|missense_variant	BEND2|p.D764N|1|0.43|ENSG00000177324|chrX:18165119-18165119|C/T|missense_variant	BEND2|p.D764N|1|0.43|ENSG00000177324|chrX:18165119-18165119|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.3639526367188	2	597.357954	1192.70135	-0.33408	-0.00019956	1.5846	0.00094656	1.2505	0.000747	597.3587791150173	98.823	1.5113	98.654	98.154	99.666	-0.16862					108	35	4	0	0	0	0.80003	1	12340	12340		39.253	1.4413	1	2695800			69993	184	49069	49148	76262	76262					0.11271179176901569
RSLRLALP	8	Unmodified	_RSLRLALP_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.77197265625	2	463.300719	924.586885	-0.45458	-0.00021061	4.4194	0.0020475	3.9649	0.0018369	463.3017695838154	23.3	0.15582	23.24	23.111	23.267	-0.06086					5	3	2	0	0	0	0.027866	1	878	878		27.882	0	1	42299	+		69994	27166	49070	49149	76263	76263					0.12157476642266829
RSLRLILDSSL	11	Unmodified	_RSLRLILDSSL_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.9139404296875	3	424.925988	1271.75613	-0.72902	-0.00030978	0.81334	0.00034561	0.084313	3.5827E-05	425.2617076857894	39.098	0.46214	38.999	38.737	39.199	-0.098755					20	12	2	0	0	0	0.024747	1	3332	3332		21.032	0	1	190570			69995	10881	49071	49150	76264	76264					0.13112708414337249
RSLRSATW	8	Unmodified	_RSLRSATW_					0	0	0			REV__ENST00000407418.7_1_22:39261028-39261370:-|nuORF	REV__ENST00000407418.7_1_22:39261028-39261370:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7772521972656	2	488.769783	975.525013	-1.1875	-0.0005804	-3.4026	-0.0016631	-4.5901	-0.0022435	488.76851115190084	52.442	1.1107	52.173	51.361	52.471	-0.26903					46	29	3	0	0	0	0.027866	1	5459	5459		37.159	7.3176	1	592000	+		69996	31934	49072	49151	76265	76265					0.03627125223135863
RSLRVPKR	8	Unmodified	_RSLRVPKR_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.75604248046875	2	506.330342	1010.64613	-0.69203	-0.0003504	2.7277	0.0013811	2.0356	0.0010307	506.331553043248	34.809	0.4287	34.809	34.552	34.981	0					23	10	3	0	0	0	0.027866	1	2645	2645		24.203	5.8783	1	156320			69997	247	49073	49152	76266	76266					0.14123372656456468
RSLRYAALN	9	Unmodified	_RSLRYAALN_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;ENST00000535472.5_1_12:121764442-121775147:-|nuORF;ENST00000545218.5_1_12:121756099-121775126:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3067626953125	2	532.30399	1062.59343	-0.0668	-3.5558E-05	2.0176	0.001074	1.9508	0.0010384	532.3049046780476	58.678	0.48116	58.491	58.24	58.721	-0.18705					33	12	3	0	0	0	0.024292	1	6665	6665		32.812	2.4947	1	1496200			69998	1891	49074	49153	76267	76267					0.06463369802986563
RSLSFSTK	8	Unmodified	_RSLSFSTK_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7972412109375	2	463.258717	924.50288	-0.52685	-0.00024407	1.0764	0.00049864	0.54954	0.00025458	463.2587971182628	32.43	0.53007	32.43	32.149	32.679	0					18	13	2	0	0	0	0.027866	1	2229	2229		24.203	0	1	145140	+		69999	20633	49075	49154	76268	76268					0.037609007547075635
RSLSFSTK	8	Unmodified	_RSLSFSTK_					0	0	0			REV__ENSG00000079313|ENST00000170168|REXO1	REV__ENSG00000079313|ENST00000170168|REXO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.797119140625	2	463.258717	924.50288	-0.40364	-0.00018699	0.80756	0.00037411	0.40391	0.00018712	463.2587852003378	32.268	0.38419	32.28	32.104	32.488	0.011799					13	9	2	0	0	0	0.027866	1	2235	2235		27.882	0	1	127180	+		70000	20633	49075	49154	76269	76269					0.037609007547075635
RSLSGCPRAK	10	Unmodified	_RSLSGCPRAK_					0	0	0		ENSG00000186487|ENST00000647738|MYT1L;nc|ENSG00000186487|Q9UL68-4|MYT1L;ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000186487|ENST00000647738|MYT1L;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000186487|ENST00000647738|MYT1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2442626953125	2	537.795475	1073.5764	0.33243	0.00017878	2.4949	0.0013417	2.8273	0.0015205	537.7962780798568	55.49	0.80639	55.49	54.944	55.75	0					66	22	4	0	0	0	0.03519	1	6164	6164		80.455	9.6384	1	1686900			70001	9555;18618	49076	49155	76270	76270					0.04255125925533321
RSLSRPSSL	9	Unmodified	_RSLSRPSSL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7879638671875	2	501.788173	1001.56179	-0.41074	-0.0002061	-0.28113	-0.00014107	-0.69187	-0.00034717	501.7880623279018	32.269	0.87777	32.269	31.949	32.827	0					45	22	3	0	0	0	0.74711	1	2232	2232		42.864	0.38981	1	3247500			70002	8077	49077	49156	76271	76271					0.06107377049045226
RSLSSHRRG	9	Unmodified	_RSLSSHRRG_					0	0	0			REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|81|3|anti-sense	REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|81|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2744140625	2	528.294488	1054.57442	-0.78706	-0.0004158	4.0045	0.0021155	3.2174	0.0016997	528.2968323737699	46.736	0.54895	46.583	46.309	46.858	-0.153					31	14	3	0	0	0	0.024374	1	4640	4640		25.574	0	1	429470	+		70003	37658	49078	49157	76272	76272					0.04931833231944438
RSLSTTNVF	9	Unmodified	_RSLSTTNVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000535147.5_1_11:61081078-61081129:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7742309570312	2	512.774731	1023.53491	-0.33513	-0.00017185	0.072393	3.7121E-05	-0.26274	-0.00013473	512.7747435810525	47.713	1.0478	47.615	47.314	48.362	-0.097553					76	28	4	0	0	0	0.087669	3	4696	4674;4685;4696		114.89	40.92	1	12679000			70004	7763	49079	49158	76273;76274;76275	76275					0.02408268437852712
RSLSTTNVF	9	Unmodified	_RSLSTTNVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000535147.5_1_11:61081078-61081129:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7747802734375	2	512.774731	1023.53491	-0.6074	-0.00031146	0.15536	7.9667E-05	-0.45204	-0.00023179	512.7747891142708	48.027	1.0843	47.751	47.421	48.505	-0.27598					89	29	6	0	0	0	0.37611	1	4720	4720		67.494	6.5217	1	11535000			70005	7763	49079	49158	76276	76276					0.02408268437852712
RSLSTTNVF	9	Unmodified	_RSLSTTNVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000535147.5_1_11:61081078-61081129:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7743530273438	2	512.774731	1023.53491	0.2004	0.00010276	-0.66703	-0.00034204	-0.46663	-0.00023928	512.7743851249649	47.836	1.2371	47.649	47.279	48.516	-0.18684					96	33	6	0	0	0	0.28047	3	4707	4696;4707;4719		78.264	20.453	1	11250000			70006	7763	49079	49158	76277;76278;76279	76278					0.02408268437852712
RSLSTTNVF	9	Unmodified	_RSLSTTNVF_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000535147.5_1_11:61081078-61081129:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.774731	1023.53491	-0.13478	-6.911E-05	5.7635	0.0029554	5.6287	0.0028863	512.7790917027895	47.692	0.097755	47.539	47.476	47.574	-0.15301	-0.099952	0.0058776	NaN	114.89	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48573			70007	7763	49079	49158							0.02408268437852712
RSLSWREDQDF	11	Unmodified	_RSLSWREDQDF_					0	0	0			REV__ENSG00000271447|ENST00000605424|MMP28	REV__ENSG00000271447|ENST00000605424|MMP28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2843017578125	3	480.228507	1437.66369	-0.4164	-0.00019997	3.8283	0.0018385	3.4119	0.0016385	480.23110188932594	75.668	0.14637	75.668	75.586	75.732	0					5	3	2	0	0	0	0.02484	1	9304	9304		8.4073	0	1	82118	+		70008	29165	49080	49159	76280	76280					-0.03763421389862742
RSLTQQDQY	9	Unmodified	_RSLTQQDQY_					0	0	0			REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|0|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7776489257812	2	569.778002	1137.54145	-0.5007	-0.00028529	0.22981	0.00013094	-0.27089	-0.00015435	569.7781677148547	25.474	0.91462	25.247	24.975	25.89	-0.22683					70	21	6	0	0	0	0.19099	1	1243	1243		90.37	10.657	1	7547400	+		70009	19434	49081	49160	76281	76281					-0.021818384014068215
RSLTYMSL	8	Unmodified	_RSLTYMSL_					0	0	0			REV__ENSG00000075461|ENST00000262138|CACNG4	REV__ENSG00000075461|ENST00000262138|CACNG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.27960205078125	2	485.754953	969.495352	0.0072693	3.5311E-06	-0.11897	-5.7792E-05	-0.1117	-5.4261E-05	485.75431089331073	51.126	0.72409	51.126	50.707	51.431	0					28	19	2	0	0	0	0.027866	1	5372	5372		44.117	0	1	120630	+		70010	20550	49082	49161	76282	76282					0.009384251627921003
RSLVCVVPDV	10	Unmodified	_RSLVCVVPDV_					0	0	0		nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2462768554688	2	543.802434	1085.59032	-0.82582	-0.00044908	-0.96944	-0.00052719	-1.7953	-0.00097627	543.8016639059912	61.123	1.12	61.194	60.871	61.991	0.071129					47	29	2	0	0	0	0.03519	1	7038	7038		17.468	0	1	744740			70011	4032	49083	49162	76283	76283					0.05094358633959928
RSLVGQRSH	9	Unmodified	_RSLVGQRSH_					0	0	0			REV__ENST00000554170.1_1_14:104177876-104180529:-|nuORF	REV__ENST00000554170.1_1_14:104177876-104180529:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.8336181640625	2	520.291414	1038.56827	0.44975	0.000234	0.15851	8.247E-05	0.60826	0.00031647	520.2911625327463	20.715	0.59012	20.784	20.415	21.005	0.068901					18	11	3	0	0	0	0.024484	1	539	539		12.207	0	1	77246	+		70012	34985	49084	49163	76284	76284					0.05053315000418479
RSLVIISTL	9	Unmodified	_RSLVIISTL_					0	0	0		EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7785339355469	2	501.321317	1000.62808	0.20013	0.00010033	-0.4236	-0.00021236	-0.22346	-0.00011203	501.3209698976432	63.305	1.3681	63.305	63.054	64.422	0					93	37	4	0	0	0	0.024438	1	7505	7505		44.377	3.599	1	7214800			70013	689	49085	49164	76285	76285					0.1277919289109377
RSLVPVRF	8	Unmodified	_RSLVPVRF_					0	0	0			REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.77850341796875	2	487.300719	972.586885	-0.77553	-0.00037792	0.63994	0.00031184	-0.13559	-6.6072E-05	487.30086429517627	52.266	0.91418	52.147	51.646	52.56	-0.11875					54	23	3	0	0	0	0.027866	1	5444	5444		51.335	0	1	1702300	+		70014	33170	49086	49165	76286	76286					0.09949476642270838
RSLVTSPIR	9	Unmodified	_RSLVTSPIR_					0	0	0			REV__ENSG00000171517|ENST00000370611|LPAR3	REV__ENSG00000171517|ENST00000370611|LPAR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8031616210938	2	514.81419	1027.61383	-0.48044	-0.00024734	4.4089	0.0022698	3.9284	0.0020224	514.8154772431071	69.03	0.41333	69.03	68.825	69.238	0					23	10	3	0	0	0	0.024541	1	8274	8274		16.717	0	1	369400	+		70015	26578	49087	49166	76287	76287					0.1011254046279646
RSLVVRAE	8	Unmodified	_RSLVVRAE_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2615966796875	2	465.279983	928.545414	-0.22796	-0.00010606	0.15202	7.073E-05	-0.075939	-3.5333E-05	465.27994404821817	22.415	0.56464	22.34	22.13	22.694	-0.075296					18	11	2	0	0	0	0.027866	1	809	809		19.997	0	1	158110	+		70016	28122	49088	49167	76288	76288					0.07828295882939074
RSLWAAYSGD	10	Unmodified	_RSLWAAYSGD_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2677612304688	2	563.269813	1124.52507	-0.24281	-0.00013676	-3.3023	-0.0018601	-3.5452	-0.0019969	563.2677150653773	23.556	1.4804	23.376	23.112	24.593	-0.17989					93	34	5	0	0	0	0.69662	1	952	952		67.494	0.53175	1	7326800	+		70017	28858	49089	49168	76289	76289					-0.03220919567525016
RSLWMKAP	8	Unmodified	_RSLWMKAP_					0	0	0		ENST00000490035.6_1_3:116163950-116163998:-|nuORF	ENST00000490035.6_1_3:116163950-116163998:-|nuORF	ENST00000490035.6_1_3:116163950-116163998:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7794494628906	2	494.77348	987.532406	0.15518	7.6779E-05	3.4624	0.0017131	3.6176	0.0017899	494.77460112959545	57.639	0.25888	57.449	57.222	57.48	-0.19018					10	6	2	0	0	0	0.027866	1	6306	6306		76.774	0	1	168610			70018	15426	49090	49169	76290	76290					0.0381414149920829
RSLWPLPLV	9	Unmodified	_RSLWPLPLV_					0	0	0			REV__ENSG00000204511|ENST00000376191|MCCD1	REV__ENSG00000204511|ENST00000376191|MCCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8319091796875	2	540.831852	1079.64915	-1.5879	-0.00085881	0.61462	0.00033241	-0.97332	-0.0005264	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	0.80003	1	9220	9220		39.253	2.0937	1	90806000	+		70019	28610	49091	49170	76291	76291					0.11251202990615639
RSLWVEVD	8	Unmodified	_RSLWVEVD_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30413818359375	2	502.263999	1002.51345	-0.45931	-0.00023069	1.6558	0.00083164	1.1965	0.00060094	502.2653269857536	25.335	0.43745	25.108	24.752	25.19	-0.22683					13	9	2	0	0	0	0.027866	1	1165	1165		21.96	0	1	68251			70020	1083	49092	49171	76292	76292					0.012288834091464196
RSLYADQVLRY	11	Unmodified	_RSLYADQVLRY_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.7550964355469	3	461.917493	1382.73065	-0.45342	-0.00020944	3.5071	0.00162	3.0537	0.0014105	461.91903386059164	73.301	0.47424	73.037	72.894	73.368	-0.26479					19	11	2	0	0	0	0.024735	1	8667	8667		16.53	3.0219	1	118880	+		70021	22130	49093	49172	76293	76293					0.05459233891883741
RSLYADQVLRY	11	Unmodified	_RSLYADQVLRY_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	461.917493	1382.73065	-0.19879	-9.1826E-05	2.7755	0.001282	2.5767	0.0011902	461.9188723011817	73.428	0.40427	73.151	72.884	73.288	-0.2769	0.057444	-0.00074614	NaN	16.53	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68458	+		70022	22130	49093	49172							0.05459233891883741
RSLYLHPSF	9	Unmodified	_RSLYLHPSF_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.2984619140625	2	560.300916	1118.58728	-0.62717	-0.0003514	-3.7359	-0.0020932	-4.3631	-0.0024446	560.2988368147162	38.408	1.1033	38.19	37.926	39.029	-0.21849					74	30	4	0	0	0	0.53979	1	3160	3160		56.721	1.9447	1	10207000			70023	9637	49094	49173	76294	76294					0.032728515714552486
RSLYTLSK	8	Unmodified	_RSLYTLSK_					0	0	0			REV__ENSG00000169902|ENST00000304842|TPST1	REV__ENSG00000169902|ENST00000304842|TPST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2617492675781	2	484.282192	966.549831	0.23385	0.00011325	3.8132	0.0018467	4.0471	0.0019599	484.28215860958227	56.766	0.3066	56.563	56.365	56.672	-0.20208					10	7	2	0	0	0	0.027866	1	6159	6159		15.642	4.7763	1	105190	+		70024	26413	49095	49174	76295	76295					0.06521760305872704
RSLYTLSK	8	Unmodified	_RSLYTLSK_					0	0	0			REV__ENSG00000169902|ENST00000304842|TPST1	REV__ENSG00000169902|ENST00000304842|TPST1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.282192	966.549831	-0.30987	-0.00015006	0.31842	0.0001542	0.0085515	4.1414E-06	484.2822110165756	56.635	0.59439	56.635	56.277	56.872	0	0.053936	-0.0002997	NaN	15.642	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570730	+		70025	26413	49095	49174							0.06521760305872704
RSLYTLSK	8	Unmodified	_RSLYTLSK_					0	0	0			REV__ENSG00000169902|ENST00000304842|TPST1	REV__ENSG00000169902|ENST00000304842|TPST1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.282192	966.549831	-0.64068	-0.00031027	0.64741	0.00031353	0.0067265	3.2575E-06	484.28236010103757	56.755	0.50064	56.591	56.313	56.813	-0.16432	0.0098058	1.895E-05	NaN	15.642	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507840	+		70026	26413	49095	49174							0.06521760305872704
RSLYTLSK	8	Unmodified	_RSLYTLSK_					0	0	0			REV__ENSG00000169902|ENST00000304842|TPST1	REV__ENSG00000169902|ENST00000304842|TPST1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.282192	966.549831	-0.73152	-0.00035426	0.71166	0.00034464	-0.019864	-9.6196E-06	484.28245874745846	56.437	0.6403	56.535	56.209	56.849	0.097897	-0.046232	8.1177E-05	NaN	15.642	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440850	+		70027	26413	49095	49174							0.06521760305872704
RSMDVLPP	8	Unmodified	_RSMDVLPP_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.7395935058594	2	457.741845	913.469137	-0.71322	-0.00032647	-2.2765	-0.001042	-2.9897	-0.0013685	457.74050703826833	28.226	0.90013	27.981	27.677	28.578	-0.24524					47	21	3	0	0	0	0.97794	1	1628	1628		40.778	3.7497	1	701790			70028	1236	49096	49175	76296	76296					0.008941559913068886
RSMDVLPP	8	Unmodified	_RSMDVLPP_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7976989746094	2	457.741845	913.469137	-0.78264	-0.00035825	-2.0852	-0.00095449	-2.8678	-0.0013127	457.74061481680116	28.062	1.0287	27.893	27.569	28.598	-0.16897					49	24	3	0	0	0	0.027866	1	1648	1648		50.025	0	1	660750			70029	1236	49096	49175	76297	76297					0.008941559913068886
RSMDVLPP	8	Unmodified	_RSMDVLPP_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.7396545410156	2	457.741845	913.469137	-0.33874	-0.00015505	-2.969	-0.0013591	-3.3078	-0.0015141	457.7402139714107	28.171	0.87704	28.019	27.649	28.527	-0.15195					50	21	3	0	0	0	0.80469	1	1601	1601		58.782	3.2778	1	810130			70030	1236	49096	49175	76298	76298					0.008941559913068886
RSMEDFVTW	9	Oxidation (M)	_RSM(Oxidation (M))EDFVTW_		RSM(1)EDFVTW		RSM(130)EDFVTW	0	0	1		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.7631225585938	2	593.763506	1185.51246	-0.010459	-6.2101E-06	-0.21649	-0.00012854	-0.22695	-0.00013475	593.7632361584482	60.126	1.0912	59.929	59.613	60.704	-0.19742					76	27	4	0	0	0	0.043667	4	6692	6657;6667;6679;6692		131.03	48.791	1	6390600			70031	8779	49097	49176	76299;76300;76301;76302	76302		368			-0.07287699022072047
RSMEDFVTW	9	Oxidation (M)	_RSM(Oxidation (M))EDFVTW_		RSM(1)EDFVTW		RSM(110)EDFVTW	0	0	1		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.7633666992188	2	593.763506	1185.51246	-0.53615	-0.00031835	0.22265	0.0001322	-0.3135	-0.00018614	593.7635254930565	59.971	1.3524	59.795	59.401	60.753	-0.1761					88	34	4	0	0	0	0.1158	3	6636	6636;6647;6661		107.01	24.702	1	6320000			70032	8779	49097	49176	76303;76304;76305	76303		368			-0.07287699022072047
RSMEDFVTW	9	Oxidation (M)	_RSM(Oxidation (M))EDFVTW_		RSM(1)EDFVTW		RSM(100)EDFVTW	0	0	1		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.7638549804688	2	593.763506	1185.51246	-0.74829	-0.00044431	0.50223	0.0002982	-0.24606	-0.0001461	593.7636418689206	60.14	1.2072	59.891	59.495	60.703	-0.24842					90	30	4	0	0	0	0.14024	4	6650	6650;6661;6673;6686		101.6	39.493	1	5761200			70033	8779	49097	49176	76306;76307;76308;76309	76306		368			-0.07287699022072047
RSMGKLGK	8	Unmodified	_RSMGKLGK_					0	0	0			REV__ENST00000555803.5_1_14:67854137-67857439:-|nuORF	REV__ENST00000555803.5_1_14:67854137-67857439:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.8538513183594	2	438.75783	875.501106	-1.4473	-0.000635	1.2713	0.00055781	-0.17594	-7.7193E-05	438.75820293435595	38.747	0.33124	38.582	38.396	38.727	-0.16458					15	8	2	0	0	0	0.027866	1	3222	3222		10.866	4.13	1	189400	+		70034	35016	49098	49177	76310	76310					0.058375684651196025
RSMILHLL	8	Unmodified	_RSMILHLL_					0	0	0		ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.287109375	2	491.796955	981.579357	0.18589	9.1421E-05	-2.6398	-0.0012982	-2.4539	-0.0012068	491.795447594537	68.375	1.2324	68.083	67.896	69.129	-0.29266					47	31	2	0	0	0	0.027866	1	8133	8133		31.955	5.1588	1	220170			70035	5945	49099	49178	76311	76311					0.08783001050358052
RSMNVIFY	8	Unmodified	_RSMNVIFY_					0	0	0		ENST00000265563.12_1_3:48784702-48784864:-|nuORF	ENST00000265563.12_1_3:48784702-48784864:-|nuORF	ENST00000265563.12_1_3:48784702-48784864:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7894287109375	2	515.262945	1028.51134	-0.8295	-0.00042741	2.4013	0.0012373	1.5718	0.00080988	515.2641114587249	61.853	0.77511	61.853	61.374	62.149	0					61	20	4	0	0	0	0.027866	1	7149	7149		13.775	0	1	4094900			70036	11596	49100	49179	76312	76312					-0.0017786860032629193
RSMRGAAL	8	Unmodified	_RSMRGAAL_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.7249450683594	2	431.239804	860.465055	0.49353	0.00021283	1.9522	0.00084186	2.4457	0.0010547	431.2407786242173	36.376	0.23819	36.159	36.088	36.326	-0.21661					6	5	2	0	0	0	0.027866	1	2844	2844		58.782	0	1	34414	+		70037	22314	49101	49180	76313	76313					0.029241112882459674
RSNDKKPVQ	9	Unmodified	_RSNDKKPVQ_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7843017578125	2	536.298904	1070.58326	-0.91458	-0.00049049	0.01412	7.5728E-06	-0.90046	-0.00048291	536.2988389946476	30.949	1.0215	31.024	30.75	31.771	0.074314					34	24	2	0	0	0	0.024447	1	2087	2087		25.574	4.6271	1	903650	+		70038	24914	49102	49181	76314	76314					0.050787620777555276
RSNDKKPVQ	9	Unmodified	_RSNDKKPVQ_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.298904	1070.58326	-1.1633	-0.0006239	0.43324	0.00023234	-0.73011	-0.00039156	536.2990455100457	31.323	0.66606	31.323	31.003	31.669	0	0.13328	0.00022112	NaN	25.574	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950270	+		70039	24914	49102	49181							0.050787620777555276
RSNDKKPVQ	9	Unmodified	_RSNDKKPVQ_					0	0	0			REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	REV__TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.298904	1070.58326	-0.7508	-0.00040265	0.17781	9.5361E-05	-0.57299	-0.00030729	536.2989275893623	31.21	0.94847	31.222	30.914	31.863	0.011797	0.032618	-5.2847E-05	NaN	25.574	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899880	+		70040	24914	49102	49181							0.050787620777555276
RSNFIVEL	8	Unmodified	_RSNFIVEL_					0	0	0			REV__nc|ENSG00000101665|O15105-2|SMAD7	REV__nc|ENSG00000101665|O15105-2|SMAD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.77789306640625	2	489.274367	976.53418	-0.15927	-7.7928E-05	0.041432	2.0272E-05	-0.11784	-5.7656E-05	489.2738789876814	51.368	0.42035	51.092	50.853	51.274	-0.27643					21	10	3	0	0	0	0.027866	1	5280	5280		63.306	5.495	1	856490	+		70041	21251	49103	49182	76315	76315					0.044974737888196614
RSNGAIQKI	9	Unmodified	_RSNGAIQKI_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7904052734375	2	493.790715	985.566878	-0.21758	-0.00010744	-0.45434	-0.00022435	-0.67192	-0.00033179	493.79048918912946	24.248	1.1359	24.248	23.694	24.83	0					88	25	5	0	0	0	0.28753	1	1044	1044		77.318	3.0625	1	1251300			70042	5282	49104	49183	76316	76316					0.07351680911654057
RSNKLNNAR	9	Unmodified	_RSNKLNNAR_					0	0	0		nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8222045898438	2	536.802146	1071.58974	-0.83284	-0.00044707	-1.6437	-0.00088235	-2.4766	-0.0013294	536.8027022765294	45.659	0.74532	45.703	45.311	46.056	0.04388					43	21	3	0	0	0	0.024438	1	4436	4436		29.17	1.0886	1	946760			70043	5604	49105	49184	76317	76317					0.05680700029142827
RSNLPAKAI	9	Unmodified	_RSNLPAKAI_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7767028808594	2	485.295633	968.576714	-0.9493	-0.00046069	-0.5827	-0.00028278	-1.532	-0.00074347	485.2957070554471	29.354	0.86691	29.432	29.016	29.883	0.078346					51	21	4	0	0	0	0.024409	1	1745	1745		41.427	10.923	1	3400900			70044	9175	49106	49185	76318	76318					0.09116868917021748
RSNLPLSPCS	10	Unmodified	_RSNLPLSPCS_					0	0	0			REV__ENST00000455503.1_1_1:151319457-151320161:+|nuORF	REV__ENST00000455503.1_1_1:151319457-151320161:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7554321289062	2	537.274041	1072.53353	-1.133	-0.00060875	-1.3893	-0.00074646	-2.5224	-0.0013552	537.2708899159703	38.366	0.16963	38.187	38.136	38.305	-0.17929					5	4	2	0	0	0	0.03519	1	3172	3172		62.107	21.535	1	65339	+		70045	32780	49107	49186	76319	76319					0.00016311077433783794
RSNLPLSPCS	10	Unmodified	_RSNLPLSPCS_					0	0	0			REV__ENST00000455503.1_1_1:151319457-151320161:+|nuORF	REV__ENST00000455503.1_1_1:151319457-151320161:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.274041	1072.53353	-1.0127	-0.00054412	-0.52271	-0.00028084	-1.5354	-0.00082496	537.2738254381209	38.642	0.60645	38.543	38.166	38.772	-0.098755	0.17819	0.0006703	NaN	62.107	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120260	+		70046	32780	49107	49186							0.00016311077433783794
RSNPKGSSW	9	Unmodified	_RSNPKGSSW_					0	0	0		nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7563171386719	2	509.756872	1017.49919	0.27711	0.00014126	-0.48437	-0.00024691	-0.20725	-0.00010565	509.756543730566	21.314	0.48006	21.137	20.87	21.35	-0.17721					28	9	4	0	0	0	0.29609	2	650	650;662		76.17	30.218	1	240440			70047	10422	49108	49187	76320;76321	76320					-0.00885769019134841
RSNPKGSSW	9	Unmodified	_RSNPKGSSW_					0	0	0		nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.756591796875	2	509.756872	1017.49919	-0.067856	-3.459E-05	-0.19887	-0.00010137	-0.26672	-0.00013596	509.7566525373209	21.448	0.58427	21.258	20.98	21.564	-0.19072					30	11	4	0	0	0	0.26413	1	666	666		80.455	19.483	1	239250			70048	10422	49108	49187	76322	76322					-0.00885769019134841
RSNPSPRL	8	Unmodified	_RSNPSPRL_					0	0	0			REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.76220703125	2	463.761958	925.509363	0.36304	0.00016837	0.28507	0.00013221	0.64812	0.00030057	463.76199291873723	29.041	0.86772	29.12	28.739	29.607	0.078346					35	21	2	0	0	0	1.0009	1	1700	1700		37.159	1.9584	1	1764300	+		70049	27248	49109	49188	76323	76323					0.043628387060948626
RSNPSPRL	8	Unmodified	_RSNPSPRL_					0	0	0			REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.761958	925.509363	-1.3224	-0.00061329	3.0571	0.0014178	1.7347	0.00080448	463.763186618153	29.283	0.70178	29.283	28.99	29.692	0	0.064667	0.0013468	NaN	37.159	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1592300	+		70050	27248	49109	49188							0.043628387060948626
RSNPSPRL	8	Unmodified	_RSNPSPRL_					0	0	0			REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.761958	925.509363	-0.499	-0.00023142	2.213	0.0010263	1.714	0.00079488	463.76285041319113	29.248	0.6601	29.251	28.971	29.631	0.0031357	0.033523	0.00056389	NaN	37.159	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475600	+		70051	27248	49109	49188							0.043628387060948626
RSNPSPRL	8	Unmodified	_RSNPSPRL_					0	0	0			REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	REV__ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	463.761958	925.509363	0.36304	0.00016837	0.28507	0.00013221	0.64812	0.00030057	463.76199291873723	29.041	0.86772	29.12	28.739	29.607	0.078346	-0.09819	-0.0012243	NaN	37.159	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1764300	+		70052	27248	49109	49188							0.043628387060948626
RSNRKKIDDP	10	Unmodified	_RSNRKKIDDP_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	614.8185424804688	2	614.841468	1227.66838	0.44909	0.00027612	-3.1475	-0.0019352	-2.6984	-0.0016591	614.8394498078654	77.669	0.38437	77.427	77.19	77.575	-0.24232					12	8	2	0	0	0	0.03519	1	9222	9222		18.262	8.5564	1	163120			70053	5868	49110	49189	76324	76324					0.06365507543569038
RSNRKKIDDP	10	Unmodified	_RSNRKKIDDP_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	614.841468	1227.66838	-0.83224	-0.00051169	-1.7751	-0.0010914	-2.6073	-0.0016031	614.840198436815	77.596	0.42838	77.334	77.184	77.612	-0.26202	-0.046466	0.0010396	NaN	12.812	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158160			70054	5868	49110	49189							0.06365507543569038
RSNRPQVRPL	10	Unmodified	_RSNRPQVRPL_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1;ENST00000562886.1_1_16:84088056-84093058:-|nuORF	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.8875732421875	3	408.242422	1221.70544	0.086969	3.5504E-05	3.0728	0.0012544	3.1597	0.0012899	408.24342400334376	27.647	1.141	27.405	26.744	27.885	-0.24217					78	26	5	0	0	0	0.03519	1	1531	1531		19.263	0	1	441750			70055	5453	49111	49190	76325	76325					0.10345223879994592
RSNRVIKV	8	Unmodified	_RSNRVIKV_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.3087158203125	2	486.309075	970.603597	-1.1168	-0.00054312	0.51429	0.00025011	-0.60253	-0.00029302	486.3092469418298	20.397	1.0689	20.397	19.979	21.048	0					49	21	4	0	0	0	0.71833	1	523	523		65.803	15.779	1	1004000	+		70056	32238	49112	49191	76326	76326					0.11711977528227635
RSNRVIKV	8	Unmodified	_RSNRVIKV_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.30841064453125	2	486.309075	970.603597	-0.53212	-0.00025877	0.038617	1.878E-05	-0.4935	-0.00023999	486.3090057572208	20.571	0.91579	20.467	20.227	21.143	-0.10477					43	18	4	0	0	0	0.77775	1	563	563		60.972	5.4677	1	991990	+		70057	32238	49112	49191	76327	76327					0.11711977528227635
RSNRVIKV	8	Unmodified	_RSNRVIKV_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.3088073730469	2	486.309075	970.603597	0.68115	0.00033125	-0.79474	-0.00038649	-0.11359	-5.5241E-05	486.30863086353884	20.437	1.0332	20.506	20.267	21.3	0.068901					48	20	4	0	0	0	0.68535	1	488	488		68.485	4.2774	1	1020200	+		70058	32238	49112	49191	76328	76328					0.11711977528227635
RSNRVIKV	8	Unmodified	_RSNRVIKV_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3088073730469	2	486.309075	970.603597	0.04447	2.1626E-05	-0.40336	-0.00019616	-0.35889	-0.00017453	486.30881767345977	20.637	0.68108	20.469	20.246	20.927	-0.16774					39	13	4	0	0	0	0.74904	1	574	574		63.306	13.865	1	2101200	+		70059	32238	49112	49191	76329	76329					0.11711977528227635
RSNRVIKV	8	Unmodified	_RSNRVIKV_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3089294433594	2	486.309075	970.603597	-0.34119	-0.00016592	-0.081058	-3.9419E-05	-0.42225	-0.00020534	486.3090092491961	20.812	0.69344	20.588	20.365	21.058	-0.22344					37	13	4	0	0	0	0.74904	1	561	561		63.306	2.3343	1	1831400	+		70060	32238	49112	49191	76330	76330					0.11711977528227635
RSNSSAANLMA	11	Unmodified	_RSNSSAANLMA_					0	0	0		ENSG00000163394|ENST00000295589|CCKAR	ENSG00000163394|ENST00000295589|CCKAR	ENSG00000163394|ENST00000295589|CCKAR	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2703247070312	2	561.272029	1120.52951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.842	1	26.674	26.174	27.174	-0.16816								0	0	0	1.072	1	1426	1426		38.754	1.5945	1				70061	7072	49113	49192	76331	76331					-0.02593778416257919
RSNSVRAVQL	10	Unmodified	_RSNSVRAVQL_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.805419921875	2	565.325454	1128.63635	-1.2318	-0.00069637	-1.6169	-0.00091407	-2.8487	-0.0016104	565.3270950434808	56.204	0.15044	56.302	56.209	56.359	0.097893					5	3	2	0	0	0	0.03519	1	6184	6184		45.972	9.5255	1	47049	+		70062	19695	49114	49193	76332	76332					0.0771813986041252
RSNSVSSLDLE	11	Unmodified	_RSNSVSSLDLE_					0	0	0		nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	603.2687377929688	2	603.801674	1205.58879	-0.11714	-7.0732E-05	-2.2828	-0.0013784	-2.4	-0.0014491	603.798856070548	71.866	0.68239	71.604	71.322	72.004	-0.26199					24	16	2	0	0	0	0.024804	1	8372	8372		56.434	12.057	1	76059			70063	7383	49115	49194	76333	76333					-0.005776039210786621
RSNWSIIK	8	Unmodified	_RSNWSIIK_					0	0	0			REV__TARBP1|p.P1436S|1|0.42|ENSG00000059588|chr1:234393775-234393775|G/A|missense_variant	REV__TARBP1|p.P1436S|1|0.42|ENSG00000059588|chr1:234393775-234393775|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2478942871094	2	502.287808	1002.56106	0.23927	0.00012018	-1.3144	-0.00066022	-1.0752	-0.00054004	502.28731314724996	61.366	0.75481	61.437	61.095	61.85	0.071125					28	19	2	0	0	0	0.027866	1	6972	6972		64.207	11.271	1	495290	+		70064	37676	49116	49195	76334	76334					0.05988582399993447
RSPARDHAL	9	Unmodified	_RSPARDHAL_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.2537231445312	2	511.778139	1021.54173	0.012267	6.2782E-06	1.1875	0.00060774	1.1998	0.00061402	511.77941756875947	54.552	0.45736	54.65	54.458	54.916	0.098015					15	12	2	0	0	0	0.023837	1	5900	5900		54.776	1.4249	1	206240	+		70065	21695	49117	49196	76335	76335					0.03181626109073932
RSPARGLLSP	10	Unmodified	_RSPARGLLSP_					0	0	0			REV__ENST00000224756.12_1_10:86230212-86274020:+|nuORF	REV__ENST00000224756.12_1_10:86230212-86274020:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.3115234375	2	527.311815	1052.60908	-0.73064	-0.00038528	0.13036	6.8738E-05	-0.60029	-0.00031654	527.3117930767723	20.602	0.81742	20.497	20.178	20.995	-0.10477					38	16	4	0	0	0	0.78438	1	545	545		61.691	2.9093	1	670000	+		70066	29366	49118	49197	76336	76336					0.08487656320039605
RSPAYASK	8	Unmodified	_RSPAYASK_					0	0	0			REV__ENSG00000184545|ENST00000397374|DUSP8	REV__ENSG00000184545|ENST00000397374|DUSP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.24261474609375	2	440.237784	878.461016	-1.1679	-0.00051417	1.1324	0.00049854	-0.035498	-1.5627E-05	440.23823531694774	44.689	0.80288	44.589	44.317	45.12	-0.099449					44	20	4	0	0	0	0.027866	1	4186	4186		20.947	4.4738	1	660490	+		70067	27680	49119	49198	76337	76337					0.016923450661806783
RSPEGPLVLG	10	Unmodified	_RSPEGPLVLG_					0	0	0			REV__ENST00000223210.4_1_7:149561708-149562062:+|nuORF	REV__ENST00000223210.4_1_7:149561708-149562062:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.8105163574219	2	512.792924	1023.57129	0.86665	0.00044441	-1.6368	-0.00083932	-0.7701	-0.0003949	512.792057773396	22.959	0.78874	22.768	22.108	22.897	-0.19117					23	16	2	0	0	0	0.03519	1	751	751		18.262	7.9968	1	82148	+		70068	29364	49120	49199	76338	76338					0.060451453345763184
RSPEMSSIL	9	Unmodified	_RSPEMSSIL_					0	0	0		ENST00000436857.5_1_7:72440510-72440639:-|nuORF	ENST00000436857.5_1_7:72440510-72440639:-|nuORF	ENST00000436857.5_1_7:72440510-72440639:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2738952636719	2	510.263142	1018.51173	-0.24733	-0.0001262	-2.9573	-0.001509	-3.2047	-0.0016352	510.26168724927606	76.586	0.12961	76.417	76.309	76.439	-0.16854					4	2	2	0	0	0	0.024511	1	9086	9086		40.778	11.629	1	45701			70069	14284	49121	49200	76339	76339					0.003215063288962483
RSPGEPQET	9	Unmodified	_RSPGEPQET_					0	0	0		ENSG00000175262|ENST00000377004|C1orf127;nc|nan|Q8N9H9-2|C1orf127;nc|nan|Q8N9H9|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.2878723144531	2	500.738345	999.462138	-0.97341	-0.00048742	-0.93778	-0.00046958	-1.9112	-0.00095701	500.7378272231182	24.111	1.2972	24.064	23.281	24.578	-0.047146					45	29	3	0	0	0	0.024344	1	979	979		17.468	0	1	201080			70070	8544	49122	49201	76340	76340					-0.03761485355551031
RSPGERPP	8	Unmodified	_RSPGERPP_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2081298828125	2	448.240858	894.467164	-0.46873	-0.0002101	0.070494	3.1598E-05	-0.39823	-0.0001785	448.2407748795742	22.001	0.4332	21.799	21.566	21.999	-0.20199					15	8	2	0	0	0	0.027866	1	689	689		31.955	7.7521	1	114600	+		70071	37079	49123	49202	76341	76341					0.01570863297718006
RSPGLVALP	9	Unmodified	_RSPGLVALP_					0	0	0			REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1	REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.2792663574219	2	455.279452	908.544351	-0.05197	-2.3661E-05	-0.094396	-4.2976E-05	-0.14637	-6.6637E-05	455.27926936765687	24.624	0.76625	24.409	24.177	24.943	-0.2151					37	17	3	0	0	0	0.67687	1	1105	1105		47.657	1.7054	1	1080300	+		70072	27173	49124	49203	76342	76342					0.08642081514040001
RSPLELVCL	9	Unmodified	_RSPLELVCL_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|285|2|anti-sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|285|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2608032226562	2	515.291702	1028.56885	-0.64471	-0.00033221	1.4244	0.00073398	0.7797	0.00040177	515.2929332485365	30.053	0.16144	30.062	30.002	30.164	0.0086708					5	3	2	0	0	0	0.024381	1	1891	1891		37.159	0	1	98978	+		70073	36228	49125	49204	76343	76343					0.05570973605267682
RSPLKQVQ	8	Unmodified	_RSPLKQVQ_					0	0	0			REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF	REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.8155212402344	2	478.287808	954.561064	0.15881	7.5959E-05	-1.156	-0.00055289	-0.99717	-0.00047694	478.2872601454346	49.399	0.29718	49.247	49.146	49.443	-0.15277					14	7	2	0	0	0	0.027866	1	5085	5085		79.451	13.648	1	198890	+		70074	29606	49126	49205	76344	76344					0.08196582399989438
RSPLLAHPE	9	Unmodified	_RSPLLAHPE_					0	0	0		ENST00000460696.1_1_1:5923922-5924763:-|nuORF;ENST00000378161.5_1_1:5924088-5924661:-|nuORF	ENST00000460696.1_1_1:5923922-5924763:-|nuORF	ENST00000460696.1_1_1:5923922-5924763:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.8857727050781	2	510.285266	1018.55598	0.61444	0.00031354	-3.4526	-0.0017618	-2.8382	-0.0014483	510.28417275558223	99.713	0.38488	99.578	99.334	99.719	-0.13526					11	8	2	0	0	0	0.022832	1	12372	12372		93.195	16.421	1	65239			70075	13229	49127	49206	76345	76345					0.04744278537373248
RSPLLIAALN	10	Unmodified	_RSPLLIAALN_					0	0	0			REV__ENST00000529980.5_1_11:47159254-47177376:+|nuORF	REV__ENST00000529980.5_1_11:47159254-47177376:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2789916992188	2	534.332216	1066.64988	-0.55453	-0.0002963	0.68373	0.00036534	0.1292	6.9034E-05	534.3327091931592	56.997	0.29111	56.83	56.676	56.967	-0.1672					10	7	2	0	0	0	0.03519	1	6217	6217		24.519	3.5723	1	177610	+		70076	34523	49128	49207	76346	76346					0.11921997639660731
RSPLSLGALL	10	Unmodified	_RSPLSLGALL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.818359375	2	513.818941	1025.62333	0.14436	7.4175E-05	-1.1009	-0.00056565	-0.95651	-0.00049147	513.8184161292633	72.223	1.7207	72.223	71.795	73.516	0					110	42	4	0	0	0	0.57594	1	8798	8798		79.713	2.395	1	21011000	+		70077	25812	49129	49208	76347	76347					0.11154308748336916
RSPPKLRR	8	Unmodified	_RSPPKLRR_					0	0	0			REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	REV__ENST00000512660.1_1_5:176936187-176936779:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7550354003906	2	505.322517	1008.63048	0.80888	0.00040875	-1.0541	-0.00053264	-0.24519	-0.0001239	505.3217549016698	18.478	0.54403	18.321	18.099	18.643	-0.15637					23	10	4	0	0	0	0.027866	1	344	344		5.9211	0	1	119940	+		70078	33926	49130	49209	76348	76348					0.12651086139408108
RSPPLFPL	8	Unmodified	_RSPPLFPL_					0	0	0			REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	REV__ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.77587890625	2	463.776545	925.538538	-0.027944	-1.296E-05	0.3846	0.00017837	0.35665	0.00016541	463.77649224438414	73.805	2.076	73.533	73.05	75.126	-0.27126					84	51	2	0	0	0	0.845	1	9000	9000		55.504	0	1	4373800	+		70079	33079	49131	49210	76349	76349					0.07278983002368022
RSPPNLAAF	9	Unmodified	_RSPPNLAAF_					0	0	0		ENST00000444874.5_1_7:99948953-99949927:+|nuORF	ENST00000444874.5_1_7:99948953-99949927:+|nuORF	ENST00000444874.5_1_7:99948953-99949927:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2872619628906	2	486.766709	971.518865	-1.5087	-0.00073436	1.4983	0.00072933	-0.01035	-5.0383E-06	486.76724141581195	28.903	0.64284	28.658	28.281	28.924	-0.24524					28	14	3	0	0	0	0.024436	1	1738	1738		23.042	0	1	176330			70080	14428	49132	49211	76350	76350					0.03196606991605222
RSPPYAPL	8	Unmodified	_RSPPYAPL_					0	0	0			REV__ENST00000574501.1_1_17:1963882-1964287:-|nuORF	REV__ENST00000574501.1_1_17:1963882-1964287:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2637023925781	2	450.750527	899.486502	-0.26073	-0.00011752	1.6163	0.00072857	1.3556	0.00061104	450.75117648144084	60.816	0.48749	60.816	60.509	60.996	0					18	12	2	0	0	0	0.027866	1	7023	7023		17.365	0	1	135480	+		70081	35447	49133	49212	76351	76351					0.03273819588616789
RSPQRTAG	8	Unmodified	_RSPQRTAG_					0	0	0		ENST00000460843.5_2_9:140638456-140646858:+|nuORF	ENST00000460843.5_2_9:140638456-140646858:+|nuORF	ENST00000460843.5_2_9:140638456-140646858:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.24835205078125	2	436.738483	871.462413	0.32879	0.00014359	-3.554	-0.0015522	-3.2252	-0.0014086	436.737532265098	70.845	0.20737	70.856	70.769	70.976	0.010735					6	4	2	0	0	0	0.027866	1	8492	8492		18.324	0	1	38075			70082	14666	49134	49213	76352	76352					0.02153979154957142
RSPQVGNLL	9	Unmodified	_RSPQVGNLL_					0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.28759765625	2	492.285266	982.555979	0.18433	9.0741E-05	4.0015	0.0019699	4.1858	0.0020606	492.28689660164446	75.781	1.4156	75.793	75.401	76.816	0.011635					81	36	3	0	0	0	0.31247	1	9271	9271		73.975	8.1716	1	3257000	+	+	70083	19579	49135	49214	76353	76353					0.06400278537375925
RSPRKIDQ	8	Unmodified	_RSPRKIDQ_					0	0	0		nc|ENSG00000197782|O75290-2|ZNF780A	nc|ENSG00000197782|O75290-2|ZNF780A	nc|ENSG00000197782|O75290-2|ZNF780A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.82684326171875	2	500.28834	998.562127	-1.0395	-0.00052004	-0.91693	-0.00045873	-1.9564	-0.00097876	500.2888732902687	21.89	0.6754	21.688	21.227	21.903	-0.20199					28	13	3	0	0	0	0.027866	1	717	717		56.721	5.3856	1	196920			70084	18642	49136	49215	76354	76354					0.06278796768901884
RSPRKVFSKL	10	Unmodified	_RSPRKVFSKL_					0	0	0		nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	nc|ENSG00000119787|Q8NHH9-4|ATL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.2108459472656	3	406.587418	1216.74043	0.053558	2.1776E-05	-0.1285	-5.2247E-05	-0.074943	-3.0471E-05	406.58729055875864	27.379	1.1299	27.137	27.035	28.165	-0.24217					39	26	2	0	0	0	0.03519	1	1507	1507		19.263	0	1	64471			70085	18212	49137	49216	76355	76355					0.14072466687935048
RSPRLAGL	8	Unmodified	_RSPRLAGL_					0	0	0		ENST00000461944.1_1_2:233749896-233752811:-|nuORF	ENST00000461944.1_1_2:233749896-233752811:-|nuORF	ENST00000461944.1_1_2:233749896-233752811:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.5474853515625	2	435.269419	868.524284	0.27333	0.00011897	-0.28773	-0.00012524	-0.014399	-6.2674E-06	435.2691228971985	29.627	0.70978	29.477	29.213	29.923	-0.14952					35	16	3	0	0	0	0.027866	1	1783	1783		20.482	6.7065	1	498380			70086	14694	49138	49217	76356	76356					0.08476330574092117
RSPRQRPRKV	10	Unmodified	_RSPRQRPRKV_					0	0	0		ENSG00000167094|ENST00000373289|TTC16;ENST00000489226.5_1_9:130492547-130493681:+|nuORF;ENST00000488285.1_1_9:130486913-130493681:+|nuORF	ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2648620605469	3	427.26545	1278.77452	-0.029898	-1.2774E-05	-2.351	-0.0010045	-2.3809	-0.0010173	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.126	1	6003	6003		24.232	1.6702	1	50736000			70087	7646	49139	49218	76357	76357					0.14628307899533866
RSPRQRPRKV	10	Unmodified	_RSPRQRPRKV_					0	0	0		ENSG00000167094|ENST00000373289|TTC16;ENST00000489226.5_1_9:130492547-130493681:+|nuORF;ENST00000488285.1_1_9:130486913-130493681:+|nuORF	ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.2647399902344	3	427.26545	1278.77452	0.50024	0.00021373	-2.9116	-0.001244	-2.4113	-0.0010303	427.26440770664556	53.86	5.084	53.958	53.631	58.715	0.097992					426	141	6	0	0	0	1.1151	1	5916	5916		18.531	0.69791	1	61030000			70088	7646	49139	49218	76358	76358					0.14628307899533866
RSPSDPRVL	9	Unmodified	_RSPSDPRVL_					0	0	0			REV__ENST00000389385.8_1_12:113325615-113325678:+|nuORF	REV__ENST00000389385.8_1_12:113325615-113325678:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8316040039062	2	513.788173	1025.56179	-0.37296	-0.00019162	-3.5232	-0.0018102	-3.8961	-0.0020018	513.7863234229114	67.238	0.44289	67.262	67.028	67.471	0.023911					17	10	2	0	0	0	0.024313	1	7967	7967		51.193	0	1	327500	+		70089	31570	49140	49219	76359	76359					0.05003377049047231
RSPSLSRLL	9	Unmodified	_RSPSLSRLL_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2881469726562	2	514.81419	1027.61383	-0.129	-6.6413E-05	0.26986	0.00013893	0.14086	7.2517E-05	514.8140359851302	34.756	0.64602	34.54	34.267	34.913	-0.21555					33	15	3	0	0	0	0.024436	1	2555	2555		30.504	0	1	783150			70090	9891	49141	49220	76360	76360					0.10112540462819197
RSPSLWPT	8	Unmodified	_RSPSLWPT_					0	0	0		ENST00000569796.1_1_16:2278495-2279691:+|nuORF;ENST00000565413.1_3_16:2273792-2282300:+|nuORF	ENST00000569796.1_1_16:2278495-2279691:+|nuORF	ENST00000569796.1_1_16:2278495-2279691:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7744140625	2	472.253434	942.492316	-0.3358	-0.00015858	1.2017	0.00056749	0.86587	0.00040891	472.2535327827272	36.917	0.51469	36.698	36.447	36.962	-0.2195					18	12	2	0	0	0	0.027866	1	2950	2950		40.778	0	1	67064			70091	16917	49142	49221	76361	76361					0.018769181002767255
RSPSPSSSSL	10	Unmodified	_RSPSPSSSSL_					0	0	0			REV__ENST00000537496.5_1_12:109994835-109999125:-|nuORF	REV__ENST00000537496.5_1_12:109994835-109999125:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7544250488281	2	502.753995	1003.49344	-0.31154	-0.00015663	0.70338	0.00035363	0.39184	0.000197	502.75426561462433	26.265	1.1782	26.265	26.001	27.179	0					62	28	3	0	0	0	0.50517	1	1315	1315		87.696	0	1	2351100	+		70092	34701	49143	49222	76362	76362					-0.008169123214543106
RSPSQGGSFSQ	11	Unmodified	_RSPSQGGSFSQ_					0	0	0		ENSG00000186812|ENST00000330501|ZNF397	ENSG00000186812|ENST00000330501|ZNF397	ENSG00000186812|ENST00000330501|ZNF397	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.26806640625	2	569.267801	1136.52105	-0.21662	-0.00012331	-0.1676	-9.5407E-05	-0.38421	-0.00021872	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	0.849	1	990	990		54.722	0	1	3402100			70093	9577	49144	49223	76363	76363					-0.04175009061214041
RSPTPGRLP	9	Unmodified	_RSPTPGRLP_					0	0	0		ENST00000520067.5_1_5:172384285-172385778:-|nuORF	ENST00000520067.5_1_5:172384285-172385778:-|nuORF	ENST00000520067.5_1_5:172384285-172385778:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7813415527344	2	490.785433	979.556313	-0.10925	-5.3618E-05	-1.2002	-0.00058903	-1.3094	-0.00064265	490.78501822457804	32.683	0.3063	32.746	32.577	32.883	0.062885					9	7	2	0	0	0	0.024477	1	2232	2232		27.882	10.517	1	74020			70094	15970	49145	49224	76364	76364					0.06571698257232583
RSPTPPGSLST	11	Unmodified	_RSPTPPGSLST_					0	0	0		ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.3265380859375	2	550.290745	1098.56694	-0.063355	-3.4864E-05	0.85443	0.00047018	0.79107	0.00043532	550.2911821133308	68.887	0.44855	68.657	68.48	68.929	-0.23048					16	10	2	0	0	0	0.02479	1	7998	7998		45.022	7.9937	1	312920			70095	17461	49146	49225	76365	76365					0.02159636120995856
RSPTPPGSLST	11	Unmodified	_RSPTPPGSLST_					0	0	0		ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.290745	1098.56694	-1.0023	-0.00055153	1.7196	0.0009463	0.71738	0.00039477	550.2913740620093	68.964	0.32832	68.703	68.547	68.875	-0.26166	0.022819	0.00029265	NaN	45.022	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209540			70096	17461	49146	49225							0.02159636120995856
RSPVEARRM	9	Unmodified	_RSPVEARRM_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.2999877929688	2	551.300924	1100.5873	-0.46688	-0.00025739	-1.8088	-0.00099722	-2.2757	-0.0012546	551.2998848003388	26.271	1.9365	26.352	25.094	27.031	0.081293					130	46	5	0	0	0	0.56934	1	1283	1283		54.776	8.8041	1	3998600			70097	5175	49147	49226	76366	76366					0.041025282998361945
RSPVSETES	9	Unmodified	_RSPVSETES_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	496.23876953125	2	496.238178	990.461803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.202	1	31.017	30.517	31.517	-0.18503								0	0	0	0.66481	1	2050	2050		27.882	2.3082	1		+		70098	29168;36188	49148	49227	76367	76367					-0.033809050754143755
RSPWHLIY	8	Unmodified	_RSPWHLIY_					0	0	0			REV__ENST00000554554.5_1_14:24031106-24031322:-|nuORF	REV__ENST00000554554.5_1_14:24031106-24031322:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7667846679688	2	536.290351	1070.56615	-1.6785	-0.00090016	-2.5965	-0.0013925	-4.275	-0.0022926	536.2887386982605	37.757	0.77433	37.538	37.183	37.957	-0.21848					41	20	3	0	0	0	0.027866	1	2995	2995		30.504	0	1	1138400	+		70099	34991	49149	49228	76368	76368					0.033688862626149785
RSPYVGFLH	9	Unmodified	_RSPYVGFLH_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2;REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.2869262695312	2	538.287808	1074.56106	-0.886	-0.00047692	-0.21025	-0.00011318	-1.0963	-0.0005901	538.287371535805	21.568	1.7634	21.478	20.961	22.724	-0.090092					89	36	4	0	0	0	0.97455	1	671	671		25.574	0.12388	1	374490	+		70100	22264;36588	49150	49229	76369	76369					0.02676582399999461
RSQARPLD	8	Unmodified	_RSQARPLD_					0	0	0		ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.76007080078125	2	471.759415	941.504277	-0.049463	-2.3335E-05	2.1909	0.0010336	2.1414	0.0010102	471.7603045510955	75.543	0.66724	75.368	75.029	75.696	-0.17548					41	16	3	0	0	0	0.71063	1	8927	8927		66.429	5.4573	1	1591400			70101	12403	49151	49230	76370	76370					0.03118534843474663
RSQARPLD	8	Unmodified	_RSQARPLD_					0	0	0		ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.759415	941.504277	-0.62284	-0.00029383	3.5582	0.0016786	2.9353	0.0013848	471.7609593650029	75.338	0.54601	75.338	75.076	75.622	0	-0.032151	0.001063	NaN	66.429	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377260			70102	12403	49151	49230							0.03118534843474663
RSQARPLD	8	Unmodified	_RSQARPLD_					0	0	0		ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.759415	941.504277	0.0032468	1.5317E-06	3.1423	0.0014824	3.1456	0.001484	471.76079961613317	75.596	0.72141	75.351	75.077	75.799	-0.24455	-0.019198	0.0006707	NaN	66.429	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435350			70103	12403	49151	49230							0.03118534843474663
RSQARPLD	8	Unmodified	_RSQARPLD_					0	0	0		ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.759415	941.504277	0.7115	0.00033566	2.43	0.0011464	3.1415	0.001482	471.7604310841192	75.419	0.72945	75.43	75.132	75.861	0.010376	0.05888	-1.4098E-06	NaN	66.429	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647200			70104	12403	49151	49230							0.03118534843474663
RSQARPLD	8	Unmodified	_RSQARPLD_					0	0	0		ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	ENST00000336156.9_1_22:45592780-45592966:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.759415	941.504277	-0.089312	-4.2134E-05	2.1686	0.0010231	2.0793	0.00098092	471.76030549423194	75.661	0.5963	75.389	75.103	75.699	-0.27267	0.018067	-0.00024804	NaN	66.429	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	754860			70105	12403	49151	49230							0.03118534843474663
RSQAVQMTGE	10	Unmodified	_RSQAVQMTGE_					0	0	0			REV__FCHSD2-NUMA1|1|fusion	REV__FCHSD2-NUMA1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.3292846679688	2	553.76658	1105.51861	-0.38136	-0.00021118	-2.4766	-0.0013715	-2.858	-0.0015827	553.7650745594086	32.528	0.6441	32.37	32.163	32.807	-0.15772					40	15	4	0	0	0	0.03519	1	2213	2213		36.447	16.45	1	853310	+		70106	36034	49152	49231	76371	76371					-0.02993180790531369
RSQCQIVVP	9	Unmodified	_RSQCQIVVP_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2710571289062	2	515.279126	1028.5437	-0.32398	-0.00016694	1.5271	0.00078687	1.2031	0.00061993	515.2818675858582	49.198	0.47621	48.918	48.647	49.123	-0.27977					19	12	2	0	0	0	0.024397	1	4937	4937		31.53	0	1	172330	+		70107	25846	49153	49232	76372	76372					0.03056918802690234
RSQDARLSWL	10	Unmodified	_RSQDARLSWL_					0	0	0		GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC	GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	GHDC|p.F442Lfs*4|1|0.09|ENSG00000167925|chr17:42190233-42190233|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.8791809082031	3	411.222916	1230.64692	-0.31387	-0.00012907	2.9707	0.0012216	2.6568	0.0010925	411.2239965530676	31.83	0.79228	31.672	31.412	32.204	-0.15772					25	18	2	0	0	0	0.03519	1	2109	2109		31.634	3.0575	1	159340			70108	7751	49154	49233	76373	76373					0.0408212251486475
RSQDRVLSN	9	Unmodified	_RSQDRVLSN_					0	0	0		ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3132934570312	2	537.786161	1073.55777	-1.5086	-0.00081133	-2.5682	-0.0013811	-4.0768	-0.0021925	537.784809653794	62.795	0.61848	62.556	62.37	62.988	-0.23926					21	15	2	0	0	0	0.02438	1	7280	7280		25.126	0	1	1036000			70109	8568	49155	49234	76374	76374					0.023932875553555277
RSQEERAAP	9	Unmodified	_RSQEERAAP_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3265991210938	2	522.265062	1042.51557	-0.028663	-1.497E-05	3.4253	0.0017889	3.3966	0.0017739	522.2664092759268	55.273	0.51868	55.273	54.908	55.427	0					30	14	3	0	0	0	0.024523	1	6112	6112		15.642	0.77694	1	331670	+		70110	21011	49156	49235	76375	76375					-0.003986878530440663
RSQEGKPLSLQ	11	Unmodified	_RSQEGKPLSLQ_					0	0	0		ENST00000424436.1_1_22:39488108-39488848:+|nuORF	ENST00000424436.1_1_22:39488108-39488848:+|nuORF	ENST00000424436.1_1_22:39488108-39488848:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.8986511230469	3	414.89821	1241.6728	0.31977	0.00013267	-0.1938	-8.0408E-05	0.12597	5.2266E-05	414.89822568759973	25.073	1.2709	25.154	24.779	26.049	0.08009					99	29	6	0	0	0	0.83252	1	1128	1128		55.721	2.1242	1	11103000			70111	14045	49157	49236	76376	76376					0.06162971966477926
RSQESFSLHSF	11	Unmodified	_RSQESFSLHSF_					0	0	0		ENST00000562948.1_1_15:76643488-76646616:-|nuORF	ENST00000562948.1_1_15:76643488-76646616:-|nuORF	ENST00000562948.1_1_15:76643488-76646616:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2589416503906	3	442.214198	1323.62076	-0.84444	-0.00037342	-2.2114	-0.00097791	-3.0558	-0.0013513	442.2128003672388	27.137	0.46738	27.218	26.996	27.463	0.081293					14	12	2	0	0	0	0.024739	1	1433	1433		17.167	0	1	304740			70112	16858	49158	49237	76377	76377					-0.02810191447269972
RSQHSGPLAP	10	Unmodified	_RSQHSGPLAP_					0	0	0			REV__ENST00000366835.7_1_1:226043614-226044619:-|nuORF	REV__ENST00000366835.7_1_1:226043614-226044619:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.27685546875	2	525.277972	1048.54139	-0.35761	-0.00018785	1.8383	0.0009656	1.4807	0.00077775	525.2789285218827	94.453	1.0489	94.453	93.992	95.041	-0.00022888					29	24	2	0	0	0	0.03519	1	12004	12004		51.335	22.186	1	115430	+		70113	30989	49159	49238	76378	76378					0.01906206389230647
RSQLNKLER	9	Unmodified	_RSQLNKLER_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.8176879882812	2	572.333279	1142.652	-0.25927	-0.00014839	-0.12669	-7.2511E-05	-0.38597	-0.0002209	572.3331757758796	19.844	0.47179	19.725	19.495	19.967	-0.11872					19	9	3	0	0	0	0.024428	1	431	431		32.751	0	1	93938	+		70114	21955	49160	49239	76379	76379					0.08638426377478936
RSQLQPSAW	9	Unmodified	_RSQLQPSAW_					0	0	0		ENST00000344686.6_1_17:43341935-43342603:-|nuORF	ENST00000344686.6_1_17:43341935-43342603:-|nuORF	ENST00000344686.6_1_17:43341935-43342603:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3056640625	2	536.780348	1071.54614	-0.98542	-0.00052895	0.88158	0.00047321	-0.10384	-5.5742E-05	536.780926333805	48.147	0.51906	47.871	47.561	48.08	-0.27598					26	13	2	0	0	0	0.024418	1	4737	4737		45.972	22.45	1	884300			70115	12555	49161	49240	76380	76380					0.01323090531991511
RSQLQVQLQI	10	Unmodified	_RSQLQVQLQI_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;ENST00000547903.1_1_14:105848293-105857603:+|nuORF	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.9068298339844	3	404.906816	1211.69862	0.77879	0.00031534	-1.0445	-0.00042292	-0.26571	-0.00010759	404.90639899175994	22.71	0.97486	22.71	22.385	23.36	0					63	21	4	0	0	0	0.86089	1	835	835		56.632	3.0354	1	1523400			70116	8894	49162	49241	76381	76381					0.10123866208755317
RSQLSHLSN	9	Unmodified	_RSQLSHLSN_					0	0	0			REV__nc|ENSG00000140262|Q99081|TCF12	REV__nc|ENSG00000140262|Q99081|TCF12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2914428710938	2	521.275429	1040.53631	-0.41387	-0.00021574	-2.8517	-0.0014865	-3.2655	-0.0017022	521.2739886694508	66.068	0.32596	65.855	65.67	65.996	-0.21327					11	7	2	0	0	0	0.024397	1	7566	7566		24.519	4.5224	1	49598	+		70117	36715	49163	49242	76382	76382					0.0176590252663118
RSQNLKKSLY	10	Unmodified	_RSQNLKKSLY_					0	0	0			REV__ENSG00000256394|ENST00000537611|ASIC5	REV__ENSG00000256394|ENST00000537611|ASIC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.8951110839844	3	412.906816	1235.69862	0.051926	2.1441E-05	0.79721	0.00032917	0.84914	0.00035061	412.90641391673336	30.473	0.20383	30.323	30.14	30.344	-0.14952					6	4	2	0	0	0	0.03519	1	1925	1925		23.378	0	1	30890	+		70118	29079	49164	49243	76383	76383					0.0901986620876869
RSQPEQGQV	9	Unmodified	_RSQPEQGQV_					0	0	0			REV__ENST00000446119.2_1_17:60759570-60767382:+|nuORF;REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.2982788085938	2	514.759612	1027.50467	-0.31212	-0.00016067	4.0909	0.0021058	3.7788	0.0019452	514.7614542929801	52.808	0.5215	52.9	52.602	53.123	0.091942					20	13	2	0	0	0	0.024397	1	5557	5557		39.253	10.103	1	135070	+		70119	19916;32624	49165	49244	76384	76384					-0.007980902273402535
RSQPISND	8	Unmodified	_RSQPISND_					0	0	0			REV__ENST00000495126.1_1_1:157767544-157767583:-|nuORF	REV__ENST00000495126.1_1_1:157767544-157767583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2690124511719	2	458.727781	915.441008	-0.18822	-8.6343E-05	-4.2237	-0.0019375	-4.4119	-0.0020239	458.72591603747514	48.594	1.229	48.661	48.154	49.383	0.066795					45	33	2	0	0	0	0.027866	1	4818	4818		24.203	0	1	265460	+		70120	33793	49166	49245	76385	76385					-0.020094506644227295
RSQPRPLA	8	Unmodified	_RSQPRPLA_					0	0	0			REV__ENST00000354336.7_1_22:21271769-21272156:+|nuORF	REV__ENST00000354336.7_1_22:21271769-21272156:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	462.7721862792969	2	462.772326	923.530098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.672	1	26.672	26.172	27.172	0								0	0	0	0.68521	1	1383	1383		42.396	0	1		+		70121	30753	49167	49246	76386	76386					0.06527429085747372
RSQQRGLRR	9	Unmodified	_RSQQRGLRR_					0	0	0		nc|ENSG00000104221|Q9HAW0-2|BRF2;ENSG00000104221|ENST00000220659|BRF2	nc|ENSG00000104221|Q9HAW0-2|BRF2	nc|ENSG00000104221|Q9HAW0-2|BRF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.2326049804688	2	578.842136	1155.66972	-0.81675	-0.00047277	3.4427	0.0019928	2.626	0.00152	578.8439769467767	38.793	0.43882	38.694	38.475	38.914	-0.098755					28	11	3	0	0	0	0.024527	1	3275	3275		18.262	4.125	1	465670			70122	2554	49168	49247	76387	76387					0.09811186423007712
RSQRARGVP	9	Unmodified	_RSQRARGVP_					0	0	0		ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7894897460938	2	513.799406	1025.58426	0.43475	0.00022337	2.2588	0.0011606	2.6935	0.0013839	513.8003373924201	55.289	0.66593	55.289	55.049	55.715	0					28	18	2	0	0	0	0.024323	1	6099	6099		35.618	1.4457	1	630450			70123	9872	49169	49248	76388	76388					0.07249021237339548
RSQRERER	8	Unmodified	_RSQRERER_					0	0	0			REV__ENST00000565992.1_1_16:1116342-1123095:-|nuORF	REV__ENST00000565992.1_1_16:1116342-1123095:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.7592163085938	2	558.802677	1115.5908	-0.29642	-0.00016564	-1.3168	-0.00073581	-1.6132	-0.00090144	558.8023542236085	27.036	0.27055	27.036	26.908	27.179	0					10	6	2	0	0	0	0.027866	1	1424	1424		27.882	10.517	1	55871	+		70124	35291	49170	49249	76389	76389					0.03762914398043904
RSQRFLNDP	9	Unmodified	_RSQRFLNDP_					0	0	0		ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21;ENST00000498414.5_1_6:30314081-30314584:+|nuORF	ENST00000473266.1_1_6:30313175-30314584:+|nuORF	ENST00000473266.1_1_6:30313175-30314584:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.7667846679688	2	566.796529	1131.5785	0.49277	0.0002793	3.0017	0.0017014	3.4945	0.0019807	566.7984815268998	40.883	0.28537	40.76	40.584	40.87	-0.12317					17	7	3	0	0	0	0.024374	1	3625	3625		32.812	0	1	97772			70125	10781	49171	49250	76390	76390					0.017978779350187324
RSQRQWQNKRH	11	Unmodified	_RSQRQWQNKRH_					0	0	0			REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF	REV__ENST00000426911.2_1_X:136058956-136065632:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2919006347656	3	508.606534	1522.79777	0.11827	6.0153E-05	-3.3809	-0.0017195	-3.2626	-0.0016594	508.6045455019105	50.381	0.2554	50.276	50.202	50.457	-0.10558					9	6	2	0	0	0	0.024776	1	5141	5141		24.276	8.3553	1	123190	+		70126	32278	49172	49251	76391	76391					0.05728701946190995
RSQRRAKA	8	Unmodified	_RSQRRAKA_					0	0	0		ENST00000567071.5_2_15:42700454-42701567:+|nuORF;ENST00000549793.5_2_15:42695178-42701567:+|nuORF	ENST00000567071.5_2_15:42700454-42701567:+|nuORF	ENST00000567071.5_2_15:42700454-42701567:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.77716064453125	2	486.794124	971.573694	-0.40264	-0.000196	-3.3293	-0.0016207	-3.732	-0.0018167	486.79225195833595	56.626	0.45231	56.626	56.388	56.841	0					22	12	2	0	0	0	0.027866	1	6313	6313		47.657	14.142	1	461870			70127	16954	49173	49252	76392	76392					0.08677038582891328
RSQSAINTW	9	Unmodified	_RSQSAINTW_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.7682495117188	2	531.76998	1061.52541	-0.77101	-0.00041	1.853	0.00098537	1.082	0.00057538	531.7701696541302	40.377	0.72433	40.228	39.859	40.583	-0.1497					53	19	5	0	0	0	0.18694	3	3491	3481;3491;3503		91.265	33.035	1	3574300			70128	9358	49174	49253	76393;76394;76395	76394					-0.0028949984766768466
RSQSAINTW	9	Unmodified	_RSQSAINTW_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.7686767578125	2	531.76998	1061.52541	-0.63314	-0.00033668	1.2811	0.00068126	0.64798	0.00034458	531.770011656402	40.517	0.87955	40.292	39.852	40.731	-0.225					59	23	5	0	0	0	0.079716	2	3491	3491;3515		117.81	42.768	1	3718400			70129	9358	49174	49253	76396;76397	76396					-0.0028949984766768466
RSQSAINTW	9	Unmodified	_RSQSAINTW_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.7694702148438	2	531.76998	1061.52541	-1.4277	-0.00075923	2.1649	0.0011512	0.73716	0.000392	531.7705013811631	40.545	0.65579	40.315	39.968	40.624	-0.23021					47	17	4	0	0	0	0.14181	2	3485	3485;3495		101.25	33.88	1	3126400			70130	9358	49174	49253	76398;76399	76398					-0.0028949984766768466
RSQSRASRG	9	Unmodified	_RSQSRASRG_					0	0	0			REV__ENST00000257724.7_1_7:114562383-114562620:+|nuORF	REV__ENST00000257724.7_1_7:114562383-114562620:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7510681152344	2	502.770845	1003.52714	-0.3355	-0.00016868	2.2185	0.0011154	1.883	0.00094673	502.7717436447471	33.838	0.79358	33.834	33.277	34.071	-0.0045624					46	20	4	0	0	0	0.024418	1	2468	2468		23.523	12.657	1	2293000	+		70131	29565	49175	49254	76400	76400					0.02551553960961428
RSQTGLLSD	9	Unmodified	_RSQTGLLSD_					0	0	0			REV__ENSG00000089639|ENST00000203556|GMIP	REV__ENSG00000089639|ENST00000203556|GMIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7689208984375	2	488.756538	975.498523	0.41121	0.00020098	4.2598	0.002082	4.671	0.002283	488.75835081379853	68.241	0.95154	67.986	67.236	68.188	-0.25516					32	22	2	0	0	0	0.024427	1	7810	7810		14.137	0	1	111680	+		70132	20857	49176	49255	76401	76401					0.009793915411478338
RSQVFAAEV	9	Unmodified	_RSQVFAAEV_					0	0	0		ENST00000547702.5_1_12:41086304-41086343:+|nuORF	ENST00000547702.5_1_12:41086304-41086343:+|nuORF	ENST00000547702.5_1_12:41086304-41086343:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.79852294921875	2	503.769448	1005.52434	0.415	0.00020906	-2.4393	-0.0012289	-2.0243	-0.0010198	503.7675802718603	43.08	1.2341	43.111	42.795	44.029	0.030827					66	33	4	0	0	0	0.024457	1	3907	3907		15.642	0	1	2755000			70133	16539	49177	49256	76402	76402					0.021802857834245515
RSRAEAESW	9	Unmodified	_RSRAEAESW_					0	0	0		nc|ENSG00000290966|A6NCN2|KRT87P;ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__Q61726;ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000135443|ENST00000257901|KRT85;CON__P78386	nc|ENSG00000290966|A6NCN2|KRT87P;ENSG00000185479|ENST00000252252|KRT6B;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000135443|ENST00000257901|KRT85	ENSG00000185479|ENST00000252252|KRT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.265625	2	546.265062	1090.51557	-0.91988	-0.0005025	1.0069	0.00055002	0.086999	4.7524E-05	546.265642390416	26.228	1.6264	25.992	25.803	27.429	-0.23603					107	41	4	0	0	0	0.6238	1	1369	1369		51.193	8.3284	1	26288000		+	70134	509;503;18834;531	49178	49257	76403	76403					-0.026066878530400572
RSRAEAESW	9	Unmodified	_RSRAEAESW_					0	0	0		nc|ENSG00000290966|A6NCN2|KRT87P;ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__Q61726;ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;ENSG00000135443|ENST00000257901|KRT85;CON__P78386	nc|ENSG00000290966|A6NCN2|KRT87P;ENSG00000185479|ENST00000252252|KRT6B;KRT6A|p.D440Gfs*33|1|0.07|ENSG00000205420|chr12:52488435-52488436|-/T|frameshift_variant;ENSG00000135443|ENST00000257901|KRT85	ENSG00000185479|ENST00000252252|KRT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2652587890625	2	546.265062	1090.51557	-1.4789	-0.00080788	1.5066	0.00082303	0.027725	1.5145E-05	546.2659117927758	26.068	1.7547	25.905	25.716	27.471	-0.16331					121	45	4	0	0	0	0.6238	1	1345	1345		51.193	5.2204	1	25122000		+	70135	509;503;18834;531	49178	49257	76404	76404					-0.026066878530400572
RSRAPARLK	9	Unmodified	_RSRAPARLK_					0	0	0			REV__ENST00000417410.6_1_8:42396848-42397127:+|nuORF	REV__ENST00000417410.6_1_8:42396848-42397127:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2392578125	2	527.833249	1053.65194	-0.1624	-8.572E-05	1.5794	0.00083366	1.417	0.00074793	527.8346847026237	67.956	0.66631	67.668	67.47	68.136	-0.28834					23	16	3	0	0	0	0.02435	1	8089	8089		34.173	0	1	98656	+		70136	32094	49179	49258	76405	76405					0.12726471168116404
RSRAPTHRA	9	Unmodified	_RSRAPTHRA_					0	0	0			REV__ENST00000485530.5_1_3:185643245-185655732:-|nuORF	REV__ENST00000485530.5_1_3:185643245-185655732:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.802978515625	2	526.29703	1050.57951	-0.36594	-0.00019259	-3.0008	-0.0015793	-3.3667	-0.0017719	526.7972807863703	101.49	0.6022	101.49	100.96	101.56	0.0090332					16	13	2	0	0	0	0.024495	1	12962	12962		34.173	8.7224	1	301060	+		70137	23662	49180	49259	76406	76406					0.05624137094537218
RSRARVTK	8	Unmodified	_RSRARVTK_					0	0	0			REV__nc|ENSG00000159140|P18583-6|SON	REV__nc|ENSG00000159140|P18583-6|SON	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2662658691406	2	487.304324	972.594095	0.027784	1.3539E-05	2.3969	0.001168	2.4247	0.0011816	487.3053633762337	19.665	0.82285	19.504	19.282	20.105	-0.1608					36	16	5	0	0	0	0.027866	1	460	460		29.15	6.5699	1	645280	+		70138	25235	49181	49260	76407	76407					0.10670209242698547
RSRASLVPP	9	Unmodified	_RSRASLVPP_					0	0	0			REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.787353515625	2	491.793258	981.571963	-0.85734	-0.00042164	-0.030025	-1.4766E-05	-0.88737	-0.0004364	491.7931170691304	43.744	1.0067	43.6	42.951	43.958	-0.14471					69	27	4	0	0	0	0.62163	1	4101	4101		51.335	1.3109	1	4278200	+		70139	30943	49182	49261	76408	76408					0.08043984774280943
RSRASLVPP	9	Unmodified	_RSRASLVPP_					0	0	0			REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.793258	981.571963	-0.70307	-0.00034577	0.11517	5.6638E-05	-0.58791	-0.00028913	491.7930014492515	43.563	0.9782	43.563	42.932	43.91	0	-0.046495	0.00045063	NaN	51.335	82	26	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4586100	+		70140	30943	49182	49261							0.08043984774280943
RSRASLVPP	9	Unmodified	_RSRASLVPP_					0	0	0			REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	491.793258	981.571963	-0.85734	-0.00042164	-0.030025	-1.4766E-05	-0.88737	-0.0004364	491.7931170691304	43.744	1.0067	43.6	42.951	43.958	-0.14471	-0.0097923	0.00030782	NaN	51.335	69	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4278200	+		70141	30943	49182	49261							0.08043984774280943
RSRASLVPP	9	Unmodified	_RSRASLVPP_					0	0	0			REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	REV__ENST00000361470.3_1_X:75648184-75648415:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.793258	981.571963	-0.10286	-5.0584E-05	-0.908	-0.00044655	-1.0109	-0.00049713	491.79271337326406	43.635	0.91026	43.666	43.082	43.992	0.030827	0.056287	-0.00055575	NaN	51.335	63	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5360900	+		70142	30943	49182	49261							0.08043984774280943
RSRCCFARA	9	Unmodified	_RSRCCFARA_					0	0	0			REV__ENSG00000189051|ENST00000399398|RNF222	REV__ENSG00000189051|ENST00000399398|RNF222	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.2606811523438	2	535.260745	1068.50694	-0.54094	-0.00028954	0.57892	0.00030988	0.037984	2.0331E-05	535.2611466120588	24.285	1.5811	24.11	23.786	25.367	-0.17484					100	36	5	0	0	0	0.80003	1	1053	1053		39.253	1.4413	1	23335000	+		70143	28091	49183	49262	76409	76409					-0.024576562948595893
RSRDISREEW	10	Unmodified	_RSRDISREEW_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.22509765625	3	445.225097	1332.65346	-0.442	-0.00019679	-0.29549	-0.00013156	-0.73749	-0.00032835	445.225058826167	30.466	1.5088	30.222	29.82	31.329	-0.24415					97	36	4	0	0	0	0.96069	2	1936	1936;1949		50.034	3.0785	1	8482400			70144	6021	49184	49263	76410;76411	76410					0.00044015675575792557
RSRDISREEW	10	Unmodified	_RSRDISREEW_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.2252502441406	3	445.225097	1332.65346	-0.77745	-0.00034614	-0.024751	-1.102E-05	-0.8022	-0.00035716	445.2251576325834	30.318	1.7449	30.139	29.782	31.527	-0.17817					106	42	4	0	0	0	0.64214	1	1923	1923		72.243	27.221	1	7976100			70145	6021	49184	49263	76412	76412					0.00044015675575792557
RSRDISREEW	10	Unmodified	_RSRDISREEW_					0	0	0		nc|ENSG00000148337|Q9ULV3-4|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENST00000485862.5_1_9:130928478-130929503:-|nuORF;ENST00000461765.5_1_9:130928478-130929943:-|nuORF	nc|ENSG00000148337|Q9ULV3-4|CIZ1	nc|ENSG00000148337|Q9ULV3-4|CIZ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.2244873046875	3	445.225097	1332.65346	0.055112	2.4537E-05	-0.86071	-0.00038321	-0.8056	-0.00035867	445.22478558190636	30.31	1.7448	30.161	29.792	31.537	-0.14952					106	42	4	0	0	0	1.0275	2	1882	1882;1918		42.338	4.7382	1	7977700			70146	6021	49184	49263	76413;76414	76413					0.00044015675575792557
RSRDYCCQRSW	11	Unmodified	_RSRDYCCQRSW_					0	0	0		ENST00000596731.5_1_19:12780890-12781061:-|nuORF	ENST00000596731.5_1_19:12780890-12781061:-|nuORF	ENST00000596731.5_1_19:12780890-12781061:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2915344238281	3	487.215438	1458.62449	0.53084	0.00025863	4.4736	0.0021796	5.0045	0.0024382	487.21757571655917	59.806	0.59743	59.63	59.401	59.998	-0.1761					35	15	4	0	0	0	0.024865	1	6649	6649		2.688	0	1	520070			70147	17437	49185	49264	76415	76415					-0.08648168216745944
RSRDYLEWRA	10	Unmodified	_RSRDYLEWRA_					0	0	0			REV__ENSG00000181523|ENST00000326317|SGSH	REV__ENSG00000181523|ENST00000326317|SGSH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2718200683594	3	451.233704	1350.67928	0.26671	0.00012035	1.9865	0.00089635	2.2532	0.0010167	451.2344074017828	56.761	0.57606	56.559	56.171	56.747	-0.20209					26	14	3	0	0	0	0.03519	1	6175	6175		24.232	10.724	1	276220	+		70148	27408	49186	49265	76416	76416					0.017969099178571923
RSREGPKVYL	10	Unmodified	_RSREGPKVYL_					0	0	0			REV__ENST00000602875.5_1_5:139930287-139937028:-|nuORF	REV__ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.55084228515625	3	402.231412	1203.67241	0.883	0.00035517	-0.99175	-0.00039891	-0.10875	-4.3741E-05	402.2311853764777	23.417	0.7794	23.215	22.967	23.747	-0.20193					37	17	3	0	0	0	0.03519	1	923	923		29.551	6.0281	1	1612700	+		70149	35890	49187	49266	76417	76417					0.07871597037296851
RSREKNHLA	9	Unmodified	_RSREKNHLA_					0	0	0		ENST00000593362.1_1_19:49912247-49918391:+|nuORF	ENST00000593362.1_1_19:49912247-49918391:+|nuORF	ENST00000593362.1_1_19:49912247-49918391:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7693481445312	2	555.809971	1109.60539	-0.57876	-0.00032168	3.3163	0.0018432	2.7375	0.0015215	555.8108366516034	38.066	0.29285	37.887	37.775	38.068	-0.17929					11	8	2	0	0	0	0.024292	1	3136	3136		49.442	12.282	1	245840			70150	17389	49188	49267	76418	76418					0.05496986546199878
RSREPPSP	8	Unmodified	_RSREPPSP_					0	0	0		ENST00000582986.5_1_17:62801160-62833227:-|nuORF	ENST00000582986.5_1_17:62801160-62833227:-|nuORF	ENST00000582986.5_1_17:62801160-62833227:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7721862792969	2	463.246141	924.477728	-0.18451	-8.5472E-05	1.7462	0.0008089	1.5616	0.00072343	463.24597649804025	26.667	0.54485	26.667	26.406	26.951	0					22	12	2	0	0	0	0.027866	1	1383	1383		35.152	0	1	109590			70151	17188	49189	49268	76419	76419					0.012468459521414843
RSREQIVD	8	Unmodified	_RSREQIVD_					0	0	0			REV__ENSG00000140382|ENST00000336216|HMG20A	REV__ENSG00000140382|ENST00000336216|HMG20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7747497558594	2	501.76998	1001.52541	0.43566	0.0002186	1.6998	0.00085289	2.1354	0.0010715	501.7707156910157	51.093	0.57283	50.912	50.61	51.182	-0.18071					26	14	3	0	0	0	0.027866	1	5183	5183		49.442	5.3247	1	372260	+		70152	24009	49190	49269	76420	76420					0.02470500152344357
RSREQIVD	8	Unmodified	_RSREQIVD_					0	0	0			REV__ENSG00000140382|ENST00000336216|HMG20A	REV__ENSG00000140382|ENST00000336216|HMG20A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.76998	1001.52541	0.30311	0.00015209	5.5929	0.0028063	5.896	0.0029584	501.7729996891546	51.236	0.7097	51.236	50.992	51.702	0	0.22346	0.0022138	NaN	40.778	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662040	+		70153	24009	49190	49269							0.02470500152344357
RSREQIVD	8	Unmodified	_RSREQIVD_					0	0	0			REV__ENSG00000140382|ENST00000336216|HMG20A	REV__ENSG00000140382|ENST00000336216|HMG20A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.76998	1001.52541	0.70036	0.00035142	1.23	0.00061717	1.9304	0.0009686	501.7704825610809	51.027	0.37738	50.915	50.712	51.09	-0.11163	-0.097574	-0.0021645	NaN	40.778	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329150	+		70154	24009	49190	49269							0.02470500152344357
RSREQIVD	8	Unmodified	_RSREQIVD_					0	0	0			REV__ENSG00000140382|ENST00000336216|HMG20A	REV__ENSG00000140382|ENST00000336216|HMG20A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.76998	1001.52541	-0.095051	-4.7694E-05	2.1187	0.0010631	2.0237	0.0010154	501.77075811139264	51.264	0.49682	50.988	50.816	51.313	-0.27643	-0.024955	-0.0012726	NaN	40.778	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300560	+		70155	24009	49190	49269							0.02470500152344357
RSRERKHRSR	10	Unmodified	_RSRERKHRSR_					0	0	0		PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant;ENSG00000134186|ENST00000370025|PRPF38B	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	PRPF38B|p.S439Rfs*3|1|0.2|ENSG00000134186|chr1:108699696-108699697|TC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7661437988281	3	456.599491	1366.77664	-0.16859	-7.6978E-05	1.9192	0.00087631	1.7506	0.00079933	456.60042721734936	22.51	0.42452	22.435	22.177	22.602	-0.075296					14	8	2	0	0	0	0.03519	1	759	759		30.569	6.337	1	63346			70156	4762	49191	49270	76421	76421					0.10792736637358757
RSREVVVS	8	Unmodified	_RSREVVVS_					0	0	0			REV__ENST00000542294.1_1_12:7079117-7079159:-|nuORF	REV__ENST00000542294.1_1_12:7079117-7079159:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2721252441406	2	466.269616	930.524678	0.88572	0.00041298	3.3052	0.0015411	4.191	0.0019541	466.2709860791975	36.195	0.74179	35.997	35.674	36.416	-0.19829					48	19	4	0	0	0	0.95679	1	2821	2821		44.117	3.5442	1	2614800	+		70157	34789	49192	49271	76422	76422					0.05663705503297933
RSRFKEVISQE	11	Unmodified	_RSRFKEVISQE_					0	0	0			REV__ENSG00000165819|ENST00000298717|METTL3	REV__ENSG00000165819|ENST00000298717|METTL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2743835449219	3	460.252764	1377.73646	0.01058	4.8693E-06	0.23618	0.0001087	0.24676	0.00011357	460.25293547026763	34.538	0.83437	34.314	34.07	34.904	-0.22412					37	20	3	0	0	0	0.024789	1	2540	2540		26.75	10.743	1	740870	+		70158	25935	49193	49272	76423	76423					0.06270332403551038
RSRGAGLEH	9	Unmodified	_RSRGAGLEH_					0	0	0			REV__ENSG00000025708|ENST00000252029|TYMP	REV__ENSG00000025708|ENST00000252029|TYMP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.7958068847656	2	491.762489	981.510425	-1.0343	-0.00050864	2.678	0.0013169	1.6437	0.00080829	491.76403347115263	48.597	0.35265	48.321	48.08	48.433	-0.27598					12	9	2	0	0	0	0.024405	1	4825	4825		27.882	6.9353	1	117160	+		70159	20021	49194	49273	76424	76424					0.018930530750026264
RSRGAPPI	8	Unmodified	_RSRGAPPI_					0	0	0			REV__ENST00000311922.3_1_8:126442772-126443111:+|nuORF	REV__ENST00000311922.3_1_8:126442772-126443111:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.26654052734375	2	427.253769	852.492984	0.31461	0.00013442	-1.5442	-0.00065974	-1.2295	-0.00052532	427.2530449961317	42.529	0.32417	42.555	42.393	42.717	0.026012					10	8	2	0	0	0	0.027866	1	3880	3880		18.324	0	1	167280	+		70160	30214	49195	49274	76425	76425					0.0608375753998871
RSRGQKSV	8	Unmodified	_RSRGQKSV_					0	0	0			REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2677001953125	2	459.267407	916.520262	-0.69947	-0.00032124	0.28328	0.0001301	-0.41618	-0.00019114	459.26838578804836	48.36	1.4181	48.263	48.076	49.494	-0.097553					85	37	3	0	0	0	0.027866	1	4777	4777		40.778	0	1	1823700	+		70161	35696	49196	49275	76426	76426					0.058662410803776766
RSRGRRWSVAR	11	Unmodified	_RSRGRRWSVAR_					0	0	0		ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	ENST00000371753.5_1_9:138902765-138903128:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7721862792969	3	462.936103	1385.78648	-0.30765	-0.00014242	2.4458	0.0011323	2.1382	0.00098984	462.93693952138756	26.256	1.2944	26.256	25.779	27.073	0					97	30	5	0	0	0	0.024779	1	1383	1383		2.534	0	1	1693000			70162	13014	49197	49276	76427	76427					0.10901924642712402
RSRGRSYC	8	Unmodified	_RSRGRSYC_					0	0	0		nc|ENSG00000117616|Q9BUV0-3|RSRP1;nc|ENSG00000117616|Q9BUV0-2|RSRP1;ENSG00000117616|ENST00000243189|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7963562011719	2	492.743242	983.471931	-0.23063	-0.00011364	3.202	0.0015778	2.9714	0.0014641	492.7446131549538	47.908	2.0752	47.908	47.361	49.437	0					75	60	2	0	0	0	0.027866	1	4833	4833		51.335	0	1	387310			70163	3646	49198	49277	76428	76428					-0.020465758311843274
RSRGRSYC	8	Unmodified	_RSRGRSYC_					0	0	0		nc|ENSG00000117616|Q9BUV0-3|RSRP1;nc|ENSG00000117616|Q9BUV0-2|RSRP1;ENSG00000117616|ENST00000243189|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.795654296875	2	492.743242	983.471931	-0.47676	-0.00023492	2.9119	0.0014348	2.4352	0.0011999	492.74465463149556	47.99	1.9197	47.837	47.015	48.935	-0.15301					74	55	2	0	0	0	0.027866	1	4865	4865		51.335	5.3835	1	265980			70164	3646	49198	49277	76429	76429					-0.020465758311843274
RSRIRLGG	8	Unmodified	_RSRIRLGG_					0	0	0		ENST00000608477.1_1_7:128170420-128171047:-|nuORF	ENST00000608477.1_1_7:128170420-128171047:-|nuORF	ENST00000608477.1_1_7:128170420-128171047:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7976989746094	2	457.785767	913.556982	-0.90721	-0.00041531	-1.8066	-0.00082704	-2.7138	-0.0012423	457.78750105552706	28.445	0.89841	28.2	27.55	28.448	-0.24524					40	21	3	0	0	0	0.027866	1	1648	1648		51.335	14.176	1	471860			70165	17593	49199	49278	76430	76430					0.09674537696935204
RSRKHIILP	9	Unmodified	_RSRKHIILP_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3110961914062	2	560.359099	1118.70365	-1.0832	-0.00060698	-2.2612	-0.0012671	-3.3444	-0.0018741	560.357927460886	51.507	0.33873	51.594	51.445	51.783	0.087006					13	9	2	0	0	0	0.024506	1	5428	5428		23.042	2.0956	1	311860	+	+	70166	19583	49200	49279	76431	76431					0.14904214862053777
RSRKISNV	8	Unmodified	_RSRKISNV_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7713928222656	2	480.290882	958.567212	0.35586	0.00017092	2.1735	0.0010439	2.5294	0.0012148	480.29165071044395	88.765	0.58965	88.628	88.357	88.946	-0.13744					30	13	3	0	0	0	0.027866	1	10795	10795		40.778	0	1	455650	+		70167	25742	49201	49280	76432	76432					0.08627100631531448
RSRKRGLQ	8	Unmodified	_RSRKRGLQ_					0	0	0			REV__ENSG00000198049|ENST00000367126|AVPR1B	REV__ENSG00000198049|ENST00000367126|AVPR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7460021972656	2	500.809774	999.604994	-0.37543	-0.00018802	2.4686	0.0012363	2.0931	0.0010483	500.81089199225	41.613	0.35288	41.385	41.197	41.55	-0.2278					15	8	2	0	0	0	0.027866	1	3660	3660		10.866	0	1	198880	+		70168	28378	49202	49281	76433	76433					0.10517611617001421
RSRKRRQLPR	10	Unmodified	_RSRKRRQLPR_					0	0	0		ENST00000230449.8_1_6:486202-486451:-|nuORF	ENST00000230449.8_1_6:486202-486451:-|nuORF	ENST00000230449.8_1_6:486202-486451:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.80328369140625	3	451.620115	1351.83852	1.3779	0.00062227	-1.528	-0.00069007	-0.15013	-6.7803E-05	451.61933316799883	17.736	0.74277	17.582	17.408	18.15	-0.15403					21	14	2	0	0	0	0.03519	1	246	246		7.3997	0	1	91459			70169	11233	49203	49282	76434	76434					0.17667088056509783
RSRKWPAP	8	Unmodified	_RSRKWPAP_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.80401611328125	2	499.288143	996.561733	0.21902	0.00010935	-1.6009	-0.00079929	-1.3819	-0.00068994	499.287037161559	53.69	0.91676	53.69	53.16	54.076	0					55	25	3	0	0	0	0.027866	1	5745	5745		31.955	11.008	1	1003900	+		70170	26207	49204	49283	76435	76435					0.06331421839695395
RSRLATLN	8	Unmodified	_RSRLATLN_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.5432434082031	2	465.777608	929.540663	0.50618	0.00023577	-0.54695	-0.00025476	-0.040763	-1.8986E-05	465.77715691380376	23.64	0.75414	23.716	23.518	24.273	0.076239					26	16	3	0	0	0	0.027866	1	936	936		19.104	12.368	1	229380			70171	10887	49205	49284	76436	76436					0.07307411740180214
RSRLGAAP	8	Unmodified	_RSRLGAAP_					0	0	0			REV__ENST00000544915.5_2_12:27485797-27521195:+|nuORF	REV__ENST00000544915.5_2_12:27485797-27521195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	2	414.245944	826.477334	-0.13404	-5.5524E-05	0.78352	0.00032457	0.64949	0.00026905	414.24615514921896	21.071	1.1677	21.071	20.323	21.491	0					39	23	3	0	0	0	0.027866	1	617	617		12.959	0	1	686720	+		70172	34814	49206	49285	76437	76437					0.057154710229383454
RSRLRAGN	8	Unmodified	_RSRLRAGN_					0	0	0			REV__ENST00000333896.5_1_2:54785617-54785935:+|nuORF	REV__ENST00000333896.5_1_2:54785617-54785935:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.23687744140625	2	465.273024	928.531495	-1.1868	-0.0005522	4.3612	0.0020291	3.1744	0.0014769	465.2748220569767	28.756	0.62421	28.756	28.449	29.073	0					44	14	5	0	0	0	0.027866	1	1716	1716		23.042	0	1	244890	+		70173	30509	49207	49286	76438	76438					0.06437063174507784
RSRLVAHAY	9	Unmodified	_RSRLVAHAY_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.772705078125	2	536.804157	1071.59376	-0.45779	-0.00024574	-0.86444	-0.00046404	-1.3222	-0.00070978	536.8037489748525	58.739	0.64307	58.551	58.136	58.779	-0.18795					23	15	2	0	0	0	0.024381	1	6408	6408		37.159	12.64	1	344860			70174	2368	49208	49287	76439	76439					0.06082789522838539
RSRNRVPN	8	Unmodified	_RSRNRVPN_					0	0	0		PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant	PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant	PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.8214416503906	2	499.783756	997.552959	0.37067	0.00018525	2.106	0.0010525	2.4767	0.0012378	499.7848162957706	67.774	0.89173	67.793	67.384	68.276	0.018913					26	17	2	0	0	0	0.027866	1	7989	7989		37.159	0	1	1073300			70175	18966	49209	49288	76440	76440					0.054084482032294545
RSRPKKACSDE	11	Carbamidomethyl (C)	_RSRPKKAC(Carbamidomethyl (C))SDE_	RSRPKKAC(1)SDE		RSRPKKAC(52)SDE		0	1	0			REV__ENSG00000119042|ENST00000417098|SATB2	REV__ENSG00000119042|ENST00000417098|SATB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.2247619628906	3	445.22622	1332.65683	-0.442	-0.00019679	-2.8192	-0.0012552	-3.2612	-0.001452	445.225058826167	30.466	1.5088	30.222	29.82	31.329	-0.24415					97	36	4	0	0	0	0.89117	1	1926	1926		52.167	15.85	1	8482400	+		70176	22438	49210	49289	76441	76441	293				0.003809424579003462
RSRPPLSF	8	Unmodified	_RSRPPLSF_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2750549316406	2	480.274701	958.534849	-0.19981	-9.5962E-05	0.23399	0.00011238	0.034187	1.6419E-05	480.2745914117055	39.286	1.12	39.122	38.761	39.881	-0.16458					67	29	4	0	0	0	0.87148	2	3313	3313;3325		53.351	14.545	1	2946600			70177	9271	49211	49290	76442;76443	76442					0.05392313228514922
RSRPPLSF	8	Unmodified	_RSRPPLSF_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2738342285156	2	480.274701	958.534849	-0.59941	-0.00028788	0.59528	0.0002859	-0.0041372	-1.987E-06	480.27479898739085	39.414	0.80715	39.191	38.891	39.698	-0.22311					61	20	4	0	0	0	0.87148	2	3318	3318;3330		53.351	14.545	1	2784000			70178	9271	49211	49290	76444;76445	76444					0.05392313228514922
RSRPPLSF	8	Unmodified	_RSRPPLSF_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.27490234375	2	480.274701	958.534849	0.1859	8.9281E-05	-0.18179	-8.7311E-05	0.0041018	1.97E-06	480.2743848907766	39.398	1.1728	39.172	38.839	40.012	-0.2257					80	30	4	0	0	0	0.74904	1	3307	3307		63.306	15.649	1	2697900			70179	9271	49211	49290	76446	76446					0.05392313228514922
RSRPPLSF	8	Unmodified	_RSRPPLSF_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.274701	958.534849	0.33004	0.00015851	-1.8255	-0.00087674	-1.4955	-0.00071823	480.27369924473317	39.193	0.69714	39.193	38.797	39.495	0	-0.017544	-0.0013105	NaN	63.306	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1762100			70180	9271	49211	49290							0.05392313228514922
RSRPPLSF	8	Unmodified	_RSRPPLSF_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.274701	958.534849	-0.57968	-0.00027841	-0.99755	-0.0004791	-1.5772	-0.0007575	480.27417173246755	39.244	0.56563	39.145	38.88	39.446	-0.098755	-0.06505	-0.00051522	NaN	63.306	48	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1500700			70181	9271	49211	49290							0.05392313228514922
RSRPPLSF	8	Unmodified	_RSRPPLSF_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	480.274701	958.534849	-0.8786	-0.00042197	-0.55321	-0.00026569	-1.4318	-0.00068766	480.2743197597375	39.414	0.74476	39.438	39.063	39.808	0.023727	0.22753	-8.841E-05	NaN	63.306	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599600			70182	9271	49211	49290							0.05392313228514922
RSRPSESSW	9	Unmodified	_RSRPSESSW_					0	0	0			REV__ENST00000484563.1_1_1:109964540-109969047:-|nuORF	REV__ENST00000484563.1_1_1:109964540-109969047:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2654418945312	2	546.265062	1090.51557	-0.38931	-0.00021267	0.48703	0.00026605	0.097718	5.338E-05	546.265362993697	26.053	1.6161	25.885	25.7	27.317	-0.16816					110	41	4	0	0	0	0.77768	1	1339	1339		40.778	0	1	25118000	+		70183	33543	49212	49291	76447	76447					-0.026066878530400572
RSRPSESSW	9	Unmodified	_RSRPSESSW_					0	0	0			REV__ENST00000484563.1_1_1:109964540-109969047:-|nuORF	REV__ENST00000484563.1_1_1:109964540-109969047:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2655639648438	2	546.265062	1090.51557	-1.4789	-0.00080788	1.5066	0.00082303	0.027725	1.5145E-05	546.2659117927758	26.068	1.7547	25.905	25.716	27.471	-0.16331					121	45	4	0	0	0	0.31037	3	1283	1270;1283;1295		74.255	15.473	1	25122000	+		70184	33543	49212	49291	76448;76449;76450	76449					-0.026066878530400572
RSRQGPGEAF	10	Unmodified	_RSRQGPGEAF_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8101806640625	2	552.780879	1103.5472	-0.31372	-0.00017342	-2.9375	-0.0016238	-3.2512	-0.0017972	552.7790896377016	52.207	0.92022	52.059	51.609	52.53	-0.14735					51	24	3	0	0	0	0.03519	1	5487	5487		14.137	0	1	665820	+		70185	23084	49213	49292	76451	76451					-0.00042695099091361044
RSRQGVLEPT	10	Unmodified	_RSRQGVLEPT_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP;nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP;nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.2872314453125	2	571.817461	1141.62037	-0.46277	-0.00026462	2.3654	0.0013526	1.9027	0.001088	571.818872892793	65.824	1.0196	65.573	64.986	66.006	-0.25112					61	24	4	0	0	0	0.03519	1	7447	7447		21.686	0	1	682460			70186	18639;18638	49214	49293	76452	76452					0.055224336235369265
RSRQPLAP	8	Unmodified	_RSRQPLAP_					0	0	0		ENST00000494201.1_1_2:69598548-69614317:-|nuORF	ENST00000494201.1_1_2:69598548-69614317:-|nuORF	ENST00000494201.1_1_2:69598548-69614317:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	462.7722473144531	2	462.772326	923.530098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.689	1	26.665	26.165	27.165	-0.023088								0	0	0	0.47049	1	1373	1373		57.811	3.035	1				70187	15524	49215	49294	76453	76453					0.06527429085747372
RSRQPLAP	8	Unmodified	_RSRQPLAP_					0	0	0		ENST00000494201.1_1_2:69598548-69614317:-|nuORF	ENST00000494201.1_1_2:69598548-69614317:-|nuORF	ENST00000494201.1_1_2:69598548-69614317:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	462.7724304199219	2	462.772326	923.530098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.513	1	26.594	26.094	27.094	0.081293								0	0	0	0.47049	1	1309	1309		57.811	4.8746	1				70188	15524	49215	49294	76454	76454					0.06527429085747372
RSRQSPMM	8	Unmodified	_RSRQSPMM_					0	0	0			REV__ENSG00000179564|ENST00000316436|LSMEM2	REV__ENSG00000179564|ENST00000316436|LSMEM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.7415771484375	2	496.741854	991.469154	-0.88638	-0.0004403	-0.39709	-0.00019725	-1.2835	-0.00063755	496.74154445995293	26.281	1.0328	26.045	25.843	26.876	-0.23603					68	27	3	0	0	0	0.99672	1	1388	1388		37.812	0	1	5048200	+		70189	27276	49216	49295	76455	76455					-0.026921672803382535
RSRQSPMM	8	Unmodified	_RSRQSPMM_					0	0	0			REV__ENSG00000179564|ENST00000316436|LSMEM2	REV__ENSG00000179564|ENST00000316436|LSMEM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7422790527344	2	496.741854	991.469154	-1.1579	-0.0005752	-0.16114	-8.0047E-05	-1.3191	-0.00065524	496.7416700945716	26.127	0.94948	25.963	25.716	26.666	-0.16331					84	26	4	0	0	0	0.96769	1	1369	1369		42.396	3.1433	1	7449900	+		70190	27276	49216	49295	76456	76456					-0.026921672803382535
RSRRARRPLL	10	Unmodified	_RSRRARRPLL_					0	0	0		ENST00000546342.5_1_8:30585144-30585228:-|nuORF	ENST00000546342.5_1_8:30585144-30585228:-|nuORF	ENST00000546342.5_1_8:30585144-30585228:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.2649841308594	3	427.609328	1279.80615	0.10288	4.3995E-05	0.14707	6.2887E-05	0.24995	0.00010688	427.60955291950063	53.981	0.17695	53.784	53.65	53.827	-0.19739					6	5	2	0	0	0	0.03519	1	5692	5692		14.086	1.6532	1	175870			70191	16508	49217	49296	76457	76457					0.1774430065352135
RSRREAAE	8	Unmodified	_RSRREAAE_					0	0	0		nc|ENSG00000274523|Q96I51-2|RCC1L;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2863464355469	2	487.759946	973.50534	-0.38595	-0.00018825	1.41	0.00068774	1.024	0.00049949	487.76037556847587	42.089	0.69239	41.857	41.62	42.312	-0.23186					37	18	3	0	0	0	0.027866	1	3737	3737		52.937	16.49	1	332050			70192	11030	49218	49297	76458	76458					0.017527492123690536
RSRRQAQV	8	Unmodified	_RSRRQAQV_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2315673828125	2	500.791581	999.568609	-0.84368	-0.00042251	3.4649	0.0017352	2.6213	0.0013127	500.7932318368171	38.313	0.77126	38.313	38.199	38.97	0					30	20	2	0	0	0	0.027866	1	3229	3229		35.618	18.253	1	578820	+		70193	27537	49219	49298	76459	76459					0.06880734720277815
RSRRQAQV	8	Unmodified	_RSRRQAQV_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.23162841796875	2	500.791581	999.568609	-0.77873	-0.00038998	3.4197	0.0017125	2.6409	0.0013226	500.7932471933858	38.281	0.87251	38.199	37.95	38.823	-0.082516					38	23	2	0	0	0	0.027866	1	3191	3191		35.618	13.933	1	518510	+		70194	27537	49219	49298	76460	76460					0.06880734720277815
RSRRRLWKCIL	11	Unmodified	_RSRRRLWKCIL_					0	0	0		ENST00000535831.5_1_12:123319323-123319551:+|nuORF	ENST00000535831.5_1_12:123319323-123319551:+|nuORF	ENST00000535831.5_1_12:123319323-123319551:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2685241699219	3	496.301506	1485.88269	-0.43916	-0.00021795	3.6005	0.0017869	3.1613	0.001569	496.30321375316277	35.539	0.23052	35.539	35.417	35.647	0					11	5	3	0	0	0	0.02486	1	2748	2748		8.7993	0	1	68774			70195	16355	49220	49299	76461	76461					0.15918356158476854
RSRSQSCSLSY	11	Unmodified	_RSRSQSCSLSY_					0	0	0			REV__nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	REV__nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	637.2686767578125	2	637.301318	1272.58808	-1.0388	-0.00066202	-1.9725	-0.0012571	-3.0113	-0.0019191	637.3001160214576	34.435	0.47925	34.259	34.011	34.491	-0.17557					16	11	2	0	0	0	0.024751	1	2538	2538		41.08	12.503	1	130290	+		70196	27867	49221	49300	76462	76462					-0.03730721841770901
RSRSVPLF	8	Unmodified	_RSRSVPLF_					0	0	0		ENST00000484546.1_1_9:123151516-123165527:-|nuORF	ENST00000484546.1_1_9:123151516-123165527:-|nuORF	ENST00000484546.1_1_9:123151516-123165527:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2641296386719	2	481.282526	960.550499	-0.74688	-0.00035946	1.4525	0.00069906	0.7056	0.00033959	481.2839994295547	37.726	0.46788	37.758	37.525	37.992	0.032269					20	12	3	0	0	0	0.027866	1	3076	3076		19.36	0	1	112180			70197	15302	49222	49301	76463	76463					0.06864599745574651
RSRTAIPL	8	Unmodified	_RSRTAIPL_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.8632507324219	2	457.282526	912.550499	-0.84303	-0.0003855	0.62404	0.00028536	-0.21899	-0.00010014	457.2827643779803	38.234	0.38953	38.012	37.797	38.187	-0.22149					17	11	2	0	0	0	0.027866	1	3150	3150		31.53	4.8369	1	124860	+		70198	25860	49223	49302	76464	76464					0.09072599745559273
RSRTAIPL	8	Unmodified	_RSRTAIPL_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.282526	912.550499	-0.68667	-0.000314	-0.11215	-5.1284E-05	-0.79882	-0.00036529	457.28214162667246	38.281	0.19997	38.199	38.017	38.217	-0.082516	0.041198	-0.00036362	NaN	29.17	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40939	+		70199	25860	49223	49302							0.09072599745559273
RSRTAIPL	8	Unmodified	_RSRTAIPL_					0	0	0			REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	REV__nc|ENSG00000165219|Q14C86-3|GAPVD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.282526	912.550499	-1.3618	-0.00062271	0.060204	2.753E-05	-1.3016	-0.00059518	457.2825408240117	38.386	0.35376	38.413	38.298	38.651	0.027275	0.25518	-0.00020599	NaN	29.17	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49016	+		70200	25860	49223	49302							0.09072599745559273
RSRTEAESW	9	Unmodified	_RSRTEAESW_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	561.2703247070312	2	561.270344	1120.52613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.088	1	25.92	25.42	26.42	-0.16816								0	0	0	0.55222	1	1305	1305		45.972	4.5456	1			+	70201	520;569	49224	49303	76465	76465					-0.029307051986279475
RSRTKISL	8	Unmodified	_RSRTKISL_					0	0	0		nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	nc|ENSG00000119042|Q9UPW6-2|SATB2	nc|ENSG00000119042|Q9UPW6-2|SATB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.21221923828125	2	480.801083	959.587613	-0.74779	-0.00035954	3.8746	0.0018629	3.1268	0.0015034	480.802878120085	44.055	0.4054	43.835	43.634	44.04	-0.21939					24	10	3	0	0	0	0.027866	1	4050	4050		40.778	10.275	1	585620			70202	3720	49225	49304	76466	76466					0.10620271291338668
RSRTKTID	8	Unmodified	_RSRTKTID_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2301940917969	2	488.780348	975.546142	-0.61131	-0.00029879	4.2401	0.0020725	3.6288	0.0017737	488.78215594230534	31.383	0.68665	31.452	31.04	31.726	0.06896					29	16	2	0	0	0	0.027866	1	1997	1997		32.812	10.853	1	107690			70203	4599	49226	49305	76467	76467					0.0573909053200623
RSRTRGRRERR	11	Unmodified	_RSRTRGRRERR_					0	0	0		ENST00000536792.5_1_13:26828364-26828673:+|nuORF	ENST00000536792.5_1_13:26828364-26828673:+|nuORF	ENST00000536792.5_1_13:26828364-26828673:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.95855712890625	3	495.961312	1484.86211	0.11895	5.8993E-05	-4.3337	-0.0021494	-4.2148	-0.0020904	495.9586334061718	102.37	1.6075	102.2	101.47	103.08	-0.17178					122	38	5	0	0	0	1.1028	1	12683	12683		10.562	0.45799	1	585730			70204	16366	49227	49306	76468	76468					0.13906901823020235
RSRVGQAGR	9	Unmodified	_RSRVGQAGR_					0	0	0		ENST00000409921.5_1_2:85629015-85637491:-|nuORF	ENST00000409921.5_1_2:85629015-85637491:-|nuORF	ENST00000409921.5_1_2:85629015-85637491:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2587585449219	2	493.783756	985.552959	0.40536	0.00020016	1.9948	0.00098501	2.4002	0.0011852	493.7846959150122	41.377	0.81684	41.377	40.835	41.652	0					51	22	4	0	0	0	0.023655	1	3749	3749		42.864	0	1	3431300			70205	13797	49228	49307	76469	76469					0.05960448203245505
RSRVVLLL	8	Unmodified	_RSRVVLLL_					0	0	0			REV__ENST00000545387.6_1_19:49298344-49298500:-|nuORF	REV__ENST00000545387.6_1_19:49298344-49298500:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30010986328125	2	478.324194	954.633835	-1.1433	-0.00054685	2.1411	0.0010241	0.99781	0.00047728	478.3248652615527	38.023	0.1736	38.05	37.918	38.092	0.027279					5	4	2	0	0	0	0.027866	1	3083	3083		76.774	13.468	1	39795	+		70206	34824	49229	49308	76470	76470					0.15470336193425283
RSRWDAAY	8	Unmodified	_RSRWDAAY_					0	0	0		nc|ENSG00000176912|Q8TAI1|TYMSOS;ENST00000323813.3_1_18:657878-658316:-|nuORF	nc|ENSG00000176912|Q8TAI1|TYMSOS	nc|ENSG00000176912|Q8TAI1|TYMSOS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.3023681640625	2	512.75159	1023.48863	1.0929	0.00056037	-2.5543	-0.0013097	-1.4615	-0.00074937	512.7501703126736	51.462	0.64977	51.278	51.019	51.669	-0.18404					37	16	3	0	0	0	0.027866	1	5299	5299		30.504	0	1	1413300			70207	12247	49230	49309	76471	76471					-0.022177516735837344
RSRWGPAR	8	Unmodified	_RSRWGPAR_					0	0	0			REV__ENST00000524644.5_1_16:30406837-30407128:+|nuORF	REV__ENST00000524644.5_1_16:30406837-30407128:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.81353759765625	2	493.275567	984.53658	-0.062935	-3.1044E-05	3.6791	0.0018148	3.6162	0.0017838	493.2774513025887	30.108	0.8015	29.959	29.542	30.344	-0.14952					27	18	2	0	0	0	0.027866	1	1871	1871		30.504	0	1	183470	+		70208	34389	49231	49310	76472	76472					0.04369367037133998
RSRYKRITRVK	11	Unmodified	_RSRYKRITRVK_					0	0	0			REV__ENST00000545893.5_1_17:38345052-38350037:+|nuORF	REV__ENST00000545893.5_1_17:38345052-38350037:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2865295410156	3	488.307426	1461.90045	-0.052359	-2.5567E-05	-2.5195	-0.0012303	-2.5719	-0.0012559	488.6405293649331	63.36	1.2931	63.176	62.83	64.124	-0.18386					57	32	2	0	0	0	0.024869	1	7168	7168		2.534	0	1	152720	+		70209	21727	49232	49311	76473	76473					0.1879739468495245
RSSAAKRA	8	Unmodified	_RSSAAKRA_					0	0	0		ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.2582092285156	2	423.74885	845.483148	-0.026736	-1.1329E-05	3.1908	0.0013521	3.164	0.0013408	423.75016511489326	27.503	0.56067	27.261	27.035	27.596	-0.24217					28	12	3	0	0	0	0.027866	1	1502	1502		35.618	0	1	129920			70210	8352	49233	49312	76474	76474					0.05422569534607646
RSSAGAHKT	9	Unmodified	_RSSAGAHKT_					0	0	0		nc|ENSG00000171988|Q15652-3|JMJD1C;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;JMJD1C|p.I1480Yfs*16|1|0.14|ENSG00000171988|chr10:63207231-63207232|-/A|frameshift_variant	nc|ENSG00000171988|Q15652-3|JMJD1C	nc|ENSG00000171988|Q15652-3|JMJD1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2789001464844	2	457.743765	913.472977	0.23643	0.00010823	3.6662	0.0016782	3.9026	0.0017864	457.7451311203688	47.129	0.88822	47.129	46.733	47.622	0					41	24	2	0	0	0	0.024319	1	4690	4690		47.657	19.403	1	307450			70211	8227	49234	49313	76475	76475					0.012779618093759382
RSSAKKNH	8	Unmodified	_RSSAKKNH_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.25909423828125	2	464.259582	926.504612	-0.34524	-0.00016028	0.35658	0.00016555	0.011336	5.2629E-06	464.2596647245647	21.374	0.6335	21.284	20.911	21.545	-0.090092					32	12	4	0	0	0	0.95679	1	652	652		44.117	1.7207	1	359790	+		70212	22189	49235	49314	76476	76476					0.038419545633246344
RSSASSVSFF	10	Unmodified	_RSSASSVSFF_					0	0	0			REV__ENST00000442418.5_1_1:95197885-95207872:-|nuORF	REV__ENST00000442418.5_1_1:95197885-95207872:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.31640625	2	537.764363	1073.51417	-0.90466	-0.00048649	0.48496	0.0002608	-0.4197	-0.0002257	537.7644305452219	40.453	0.54331	40.303	40.04	40.583	-0.1497					31	14	4	0	0	0	0.03519	1	3479	3479		49.442	12.282	1	552050	+		70213	32561	49236	49315	76477	76477					-0.01964321941795788
RSSCAREAYP	10	Unmodified	_RSSCAREAYP_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000546525.5_1_6:170034618-170062491:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.778564453125	2	570.266747	1138.51894	0.49988	0.00028507	-2.9529	-0.001684	-2.453	-0.0013989	570.2649298790916	32.658	0.4481	32.466	32.249	32.697	-0.19261					17	10	2	0	0	0	0.03519	1	2262	2262		35.152	13.192	1	126660			70214	9340	49237	49316	76478	76478					-0.044777610707114945
RSSCFNRI	8	Unmodified	_RSSCFNRI_					0	0	0			REV__ENST00000338920.8_1_1:171501564-171501624:+|nuORF	REV__ENST00000338920.8_1_1:171501564-171501624:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2857360839844	2	491.747993	981.481433	1.1689	0.00057483	1.5061	0.00074064	2.6751	0.0013155	491.7486273660312	58.95	0.29056	58.763	58.575	58.866	-0.18705					11	7	2	0	0	0	0.027866	1	6647	6647		44.117	6.9577	1	213470	+		70215	30597	49238	49317	76479	76479					-0.01004807545643871
RSSEKPKTL	9	Unmodified	_RSSEKPKTL_					0	0	0			REV__ENSG00000163449|ENST00000437356|TMEM169	REV__ENSG00000163449|ENST00000437356|TMEM169	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2584228515625	2	523.303655	1044.59276	0.19388	0.00010146	-0.65557	-0.00034306	-0.46169	-0.0002416	523.3032284130459	24.55	0.72933	24.628	24.319	25.049	0.078344					28	15	3	0	0	0	0.024405	1	1027	1027		27.882	0	1	123040	+		70216	25567	49239	49318	76480	76480					0.07224530363305348
RSSEKPKTL	9	Unmodified	_RSSEKPKTL_					0	0	0			REV__ENSG00000163449|ENST00000437356|TMEM169	REV__ENSG00000163449|ENST00000437356|TMEM169	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.303655	1044.59276	-0.5961	-0.00031194	0.18154	9.5E-05	-0.41456	-0.00021694	523.3037608641864	24.921	0.43703	24.694	24.538	24.975	-0.22683	0.068299	0.00046915	NaN	20.947	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35652	+		70217	25567	49239	49318							0.07224530363305348
RSSEKPKTL	9	Unmodified	_RSSEKPKTL_					0	0	0			REV__ENSG00000163449|ENST00000437356|TMEM169	REV__ENSG00000163449|ENST00000437356|TMEM169	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.303655	1044.59276	-0.054548	-2.8545E-05	-1.0144	-0.00053083	-1.0689	-0.00055938	523.3031443761877	24.663	0.30263	24.488	24.34	24.643	-0.17484	-0.13747	-0.00078252	NaN	20.947	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50073	+		70218	25567	49239	49318							0.07224530363305348
RSSEKPKTL	9	Unmodified	_RSSEKPKTL_					0	0	0			REV__ENSG00000163449|ENST00000437356|TMEM169	REV__ENSG00000163449|ENST00000437356|TMEM169	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.303655	1044.59276	1.8513	0.00096879	-2.5557	-0.0013374	-0.70435	-0.00036859	523.3022739347919	24.807	0.3941	24.629	24.464	24.858	-0.17774	0.0036433	-0.0023956	NaN	20.947	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54065	+		70219	25567	49239	49318							0.07224530363305348
RSSEPGKLK	9	Unmodified	_RSSEPGKLK_					0	0	0		nc|ENSG00000101871|O15344-2|MID1;ENSG00000101871|ENST00000317552|MID1	nc|ENSG00000101871|O15344-2|MID1	nc|ENSG00000101871|O15344-2|MID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7460021972656	2	501.290548	1000.56654	-0.39143	-0.00019622	2.3684	0.0011873	1.977	0.00099104	501.7955063581603	41.702	0.23657	41.474	41.275	41.512	-0.2278					9	5	2	0	0	0	0.024511	1	3660	3660		19.104	0.84144	1	95252			70220	2355	49240	49319	76481	76481					0.06628261191804086
RSSEQVKLS	9	Unmodified	_RSSEQVKLS_					0	0	0			REV__nc|ENSG00000171606|Q96GC6-4|ZNF274	REV__nc|ENSG00000171606|Q96GC6-4|ZNF274	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2642211914062	2	517.285463	1032.55637	-0.6695	-0.00034632	-1.9255	-0.00099604	-2.595	-0.0013424	517.2844418815164	30.203	0.20684	30.212	30.082	30.289	0.0086708					8	4	3	0	0	0	0.024418	1	1913	1913		30.318	11.214	1	32036	+		70221	26583	49241	49320	76482	76482					0.041396534665636864
RSSFPLGDFP	10	Unmodified	_RSSFPLGDFP_					0	0	0			REV__ENSG00000144045|ENST00000404568|DQX1;REV__ENST00000473508.1_1_2:74750418-74753390:-|nuORF	REV__ENSG00000144045|ENST00000404568|DQX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.8060302734375	2	561.782556	1121.55056	-0.47463	-0.00026664	3.3183	0.0018642	2.8437	0.0015975	561.7842563895861	57.061	0.68696	57.061	56.809	57.496	0					37	18	3	0	0	0	0.03519	1	6464	6464		52.937	10.541	1	691770	+		70222	24310;33237	49242	49321	76483	76483					-0.005354450451022785
RSSGAFWKYYY	11	Unmodified	_RSSGAFWKYYY_					0	0	0		ENSG00000160862|ENST00000292401|AZGP1	ENSG00000160862|ENST00000292401|AZGP1	ENSG00000160862|ENST00000292401|AZGP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.260986328125	3	476.562938	1426.66699	-1.1271	-0.00053711	2.217	0.0010565	1.09	0.00051943	476.56390774986664	28.801	0.47417	28.556	28.322	28.796	-0.24524					18	10	2	0	0	0	0.024759	1	1703	1703		29.551	12.384	1	198730			70223	6846	49243	49322	76484	76484					-0.029281265451572835
RSSGEQAGRGW	11	Unmodified	_RSSGEQAGRGW_					0	0	0		nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3	nc|ENSG00000089356|Q14802-4|FXYD3	nc|ENSG00000089356|Q14802-4|FXYD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.7870483398438	2	595.786693	1189.55883	-0.59367	-0.0003537	0.52472	0.00031262	-0.06895	-4.108E-05	595.7869707042358	24.453	0.85461	24.238	23.954	24.809	-0.2151					52	19	4	0	0	0	0.0004693	3	1075	1064;1075;1088		154.01	57.978	1	2219400			70224	18106	49244	49323	76485;76486;76487	76486					-0.0283649807574875
RSSGEQAGRGW	11	Unmodified	_RSSGEQAGRGW_					0	0	0		nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3	nc|ENSG00000089356|Q14802-4|FXYD3	nc|ENSG00000089356|Q14802-4|FXYD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.7866821289062	2	595.786693	1189.55883	-0.77673	-0.00046276	0.75697	0.00045099	-0.019761	-1.1774E-05	595.7871536072739	24.317	0.85888	24.142	23.829	24.688	-0.17484					49	19	4	0	0	0	0.0004693	2	1045	1045;1057		154.01	49.998	1	2208300			70225	18106	49244	49323	76488;76489	76488					-0.0283649807574875
RSSGEQAGRGW	11	Unmodified	_RSSGEQAGRGW_					0	0	0		nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3	nc|ENSG00000089356|Q14802-4|FXYD3	nc|ENSG00000089356|Q14802-4|FXYD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.7864379882812	2	595.786693	1189.55883	1.6553	0.00098618	-1.8817	-0.0011211	-0.22646	-0.00013492	595.7855819820004	24.274	0.87436	24.093	23.848	24.723	-0.18089					54	19	4	0	0	0	3.172E-05	3	1009	1009;1019;1031		171.33	87.683	1	2099200			70226	18106	49244	49323	76490;76491;76492	76490					-0.0283649807574875
RSSGPFFA	8	Unmodified	_RSSGPFFA_					0	0	0			REV__ENST00000557876.1_1_15:41221689-41222731:+|nuORF	REV__ENST00000557876.1_1_15:41221689-41222731:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7296447753906	2	434.719227	867.423902	-1.3924	-0.00060529	3.3253	0.0014456	1.9329	0.00084027	434.72073215714886	38.329	0.16702	38.356	38.23	38.397	0.027279					6	4	2	0	0	0	0.027866	1	3131	3131		24.203	2.5004	1	55211	+		70227	35083	49245	49324	76493	76493					-0.015113264795786563
RSSGRPVTF	9	Unmodified	_RSSGRPVTF_					0	0	0			REV__ENST00000440005.6_2_22:18978337-18979364:+|nuORF	REV__ENST00000440005.6_2_22:18978337-18979364:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7870788574219	2	503.775065	1005.53558	-1.328	-0.00066899	-2.6953	-0.0013578	-4.0232	-0.0020268	503.7736541194721	37.675	0.38382	37.456	37.223	37.607	-0.21848					13	9	2	0	0	0	0.024209	1	3015	3015		47.657	14.845	1	201980	+		70228	32520	49246	49325	76494	76494					0.033031078775593414
RSSGTVLTI	9	Unmodified	_RSSGTVLTI_					0	0	0			REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.25665283203125	2	467.271824	932.529095	0.062816	2.9352E-05	2.7926	0.0013049	2.8554	0.0013343	467.2730092095395	76.689	0.40948	76.689	76.35	76.759	0					12	9	2	0	0	0	0.023655	1	9464	9464		79.713	11.228	1	126170	+		70229	36791	49247	49326	76495	76495					0.06013169926200135
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;ENST00000594207.1_1_19:41774132-41786840:+|nuORF	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2724609375	2	497.271824	992.529095	-0.010939	-5.4396E-06	-0.32697	-0.00016259	-0.33791	-0.00016803	497.27157043238543	52.615	1.392	52.615	52.012	53.404	0					91	36	4	0	0	0	0.28753	2	5629	5629;5653		77.318	18.536	1	6447100			70230	2658	49248	49327	76496;76497	76496					0.03253169926199462
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;ENST00000594207.1_1_19:41774132-41786840:+|nuORF	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2710876464844	2	497.271824	992.529095	0.18281	9.0905E-05	-0.49967	-0.00024847	-0.31686	-0.00015756	497.2714833809503	52.773	1.5077	52.626	51.985	53.493	-0.14723					96	39	4	0	0	0	0.28753	3	5661	5614;5636;5661		77.318	15.21	1	6714200			70231	2658	49248	49327	76498;76499;76500	76500					0.03253169926199462
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;ENST00000594207.1_1_19:41774132-41786840:+|nuORF	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2713623046875	2	497.271824	992.529095	0.17001	8.4541E-05	-0.63886	-0.00031769	-0.46885	-0.00023315	497.2714674398857	52.496	1.2917	52.588	52.04	53.332	0.091938					85	33	4	0	0	0	0.15366	3	5555	5543;5555;5569		98.629	24.374	1	8868700			70232	2658	49248	49327	76501;76502;76503	76502					0.03253169926199462
RSSHLTVTM	9	Unmodified	_RSSHLTVTM_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2691650390625	2	516.268758	1030.52296	-0.13397	-6.9165E-05	2.9326	0.001514	2.7986	0.0014448	516.27052545192	51.059	1.5259	51.059	50.21	51.736	0					100	43	5	0	0	0	0.40179	1	5375	5375		65.803	0	1	6683900	+		70233	24386	49249	49328	76504	76504					0.008923284230149875
RSSHWSAPT	9	Unmodified	_RSSHWSAPT_					0	0	0			REV__ENST00000493642.5_1_7:142991831-143002161:+|nuORF	REV__ENST00000493642.5_1_7:142991831-143002161:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2990112304688	2	514.749047	1027.48354	-0.43564	-0.00022424	3.8176	0.0019651	3.3819	0.0017408	514.7507877967885	62.566	0.35463	62.308	62.057	62.411	-0.25824					16	8	3	0	0	0	0.024323	1	7023	7023		35.618	0	1	721230	+		70234	33768	49250	49329	76505	76505					-0.02910055536199252
RSSICSCKI	9	Unmodified	_RSSICSCKI_					0	0	0			REV__ENST00000419916.6_1_1:2519884-2520918:+|nuORF	REV__ENST00000419916.6_1_1:2519884-2520918:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.77166748046875	2	498.751887	995.489221	0.10983	5.478E-05	3.0871	0.0015397	3.1969	0.0015945	498.7531725835251	52.067	0.36687	52.067	51.906	52.273	0					15	9	2	0	0	0	0.024397	1	5535	5535		39.253	24.388	1	152580	+		70235	32152	49251	49330	76506	76506					-0.008704163403876919
RSSIPISLL	9	Unmodified	_RSSIPISLL_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3065185546875	2	493.305667	984.596781	-0.39115	-0.00019295	-0.14229	-7.0194E-05	-0.53344	-0.00026315	493.3056111688616	56.24	0.7262	56.084	55.742	56.468	-0.15601					63	19	5	0	0	0	0.091713	2	6212	6212;6224		113.41	8.665	1	10712000	+		70236	26872	49252	49331	76507;76508	76507					0.1038661985702447
RSSIRYSKL	9	Unmodified	_RSSIRYSKL_					0	0	0			REV__ENST00000447139.1_1_3:194365415-194365493:+|nuORF	REV__ENST00000447139.1_1_3:194365415-194365493:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.7804565429688	2	555.324922	1108.63529	0.843	0.00046814	2.4473	0.0013591	3.2903	0.0018272	555.3261983656026	59.179	3.8485	58.992	58.03	61.878	-0.18705					178	103	3	0	0	0	0.024418	1	6656	6656		37.812	6.2817	1	2088800	+		70237	32641	49253	49332	76509	76509					0.08531925491524817
RSSKAAVIPI	10	Unmodified	_RSSKAAVIPI_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8158569335938	2	521.324391	1040.63423	-0.020108	-1.0483E-05	-0.074169	-3.8666E-05	-0.094277	-4.9149E-05	521.324369927367	64.421	0.59831	64.466	64.117	64.715	0.045502					25	15	3	0	0	0	0.03519	1	7526	7526		30.318	0	1	826720	+		70238	27537	49254	49333	76510	76510					0.11553711122610366
RSSKWSGQT	9	Unmodified	_RSSKWSGQT_					0	0	0			REV__ENST00000239906.9_1_5:137682722-137682833:+|nuORF	REV__ENST00000239906.9_1_5:137682722-137682833:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7680053710938	2	518.762155	1035.50976	-0.9229	-0.00047876	-1.4026	-0.00072762	-2.3255	-0.0012064	519.2626856057732	39.33	0.35882	39.231	39.018	39.377	-0.098755					16	9	2	0	0	0	0.024367	1	3341	3341		29.17	0	1	139850	+		70239	29446	49255	49334	76511	76511					-0.006577863647180493
RSSLFVGSE	9	Unmodified	_RSSLFVGSE_					0	0	0		nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-6|CACNA2D4;ENSG00000151062|ENST00000382722|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-5|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4	nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4	nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.27197265625	2	491.253631	980.49271	-0.3841	-0.00018869	1.5832	0.00077773	1.1991	0.00058904	491.25364863858823	33.668	0.19064	33.673	33.608	33.799	0.0046654					6	4	2	0	0	0	0.024405	1	2438	2438		27.882	1.1893	1	36167			70240	6173	49256	49335	76512	76512					0.0016829302948053737
RSSLQAVMLG	10	Unmodified	_RSSLQAVMLG_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2988891601562	2	531.292233	1060.56991	-1.2551	-0.00066682	-1.6474	-0.00087525	-2.9025	-0.0015421	531.291283504241	38.633	0.50904	38.454	38.136	38.645	-0.17929					19	13	2	0	0	0	0.03519	1	3215	3215		18.262	0	1	403960			70241	4475	49257	49336	76513	76513					0.042051879741620724
RSSLRVLRHGL	11	Unmodified	_RSSLRVLRHGL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	647.398193359375	2	647.396744	1292.77894	0.65018	0.00042092	0.51771	0.00033517	1.1679	0.00075609	647.3969965372378	52.722	0.58326	52.722	52.391	52.974	0					46	14	4	0	0	0	1.0238	1	5657	5657		31.53	2.3598	1	1563200			70242	9787	49258	49337	76514	76514					0.1442577232246549
RSSLYKLSH	9	Unmodified	_RSSLYKLSH_					0	0	0			REV__ENSG00000163673|ENST00000636136|DCLK3	REV__ENSG00000163673|ENST00000636136|DCLK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.8037109375	2	545.803823	1089.59309	-1.132	-0.00061784	0.33458	0.00018261	-0.7974	-0.00043522	545.8039131710468	44.957	0.92638	44.957	44.587	45.514	0					74	26	4	0	0	0	0.40693	1	4353	4353		65.465	8.7443	1	4705800	+		70243	25615	49259	49338	76515	76515					0.051879500831546466
RSSNFFLSL	9	Unmodified	_RSSNFFLSL_					0	0	0		ENST00000438423.6_1_15:57580499-57580643:+|nuORF	ENST00000438423.6_1_15:57580499-57580643:+|nuORF	ENST00000438423.6_1_15:57580499-57580643:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3115234375	2	535.785099	1069.55564	0.34405	0.00018434	-4.2642	-0.0022847	-3.9201	-0.0021003	535.784400549896	59.016	0.65725	59.016	58.75	59.408	0					19	17	2	0	0	0	0.023239	1	6775	6775		74.255	12.148	1	86130			70244	14312	49260	49339	76516	76516					0.023648588175319674
RSSNIKKID	9	Unmodified	_RSSNIKKID_					0	0	0			REV__nc|nan|Q8NDD1-6|C1orf131	REV__nc|nan|Q8NDD1-6|C1orf131	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.8110961914062	2	530.809105	1059.60366	0.0027698	1.4702E-06	1.0548	0.00055988	1.0575	0.00056135	530.8091803511924	61.74	0.75372	61.513	61.261	62.015	-0.22663					36	19	3	0	0	0	0.46427	1	7118	7118		61.691	1.573	1	1876600	+		70245	24269	49261	49340	76517	76517					0.0762393273755606
RSSNSLFQ	8	Unmodified	_RSSNSLFQ_					0	0	0			REV__ENSG00000198547|ENST00000608990|C20orf203	REV__ENSG00000198547|ENST00000608990|C20orf203	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.75054931640625	2	469.738148	937.461744	-0.12384	-5.8173E-05	-0.1812	-8.5115E-05	-0.30504	-0.00014329	469.738186607952	30.659	0.75064	30.668	30.373	31.124	0.0086708					42	17	4	0	0	0	0.027866	1	1929	1929		17.365	0.89182	1	406030	+		70246	28431	49262	49341	76518	76518					-0.009488602847568472
RSSNYLSCRTT	11	Unmodified	_RSSNYLSCRTT_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.53021240234375	3	429.875188	1286.60373	2.1937	0.000943	-3.1864	-0.0013698	-0.99275	-0.00042676	430.2083066561263	23.663	0.37617	23.472	23.284	23.66	-0.19117					12	8	2	0	0	0	0.024758	1	928	928		34.501	7.7512	1	30580			70247	18157;37870	49263	49342	76519	76519					-0.028104353247499603
RSSPLPGKK	9	Unmodified	_RSSPLPGKK_					0	0	0		ENSG00000043462|ENST00000046794|LCP2;SGCD-LCP2|2|fusion;SGCD-LCP2|1|fusion	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7770690917969	2	485.295633	968.576714	-1.3518	-0.00065605	0.79041	0.00038358	-0.56143	-0.00027246	485.2958954888795	30.16	0.70221	30.234	29.759	30.461	0.074314					28	16	2	0	0	0	0.024427	1	1804	1804		42.396	3.59	1	260350			70248	1087	49264	49343	76520	76520					0.09116868917055854
RSSPPVQFSL	10	Unmodified	_RSSPPVQFSL_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3357543945312	2	559.303655	1116.59276	0.20134	0.00011261	-0.65692	-0.00036742	-0.45557	-0.0002548	559.3031811471972	19.42	0.83231	19.259	19.084	19.916	-0.16079					30	16	4	0	0	0	0.03519	1	425	425		35.152	14.205	1	271400			70249	9939	49265	49344	76521	76521					0.03912530363299993
RSSQAILRV	9	Unmodified	_RSSQAILRV_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.3115234375	2	515.311815	1028.60908	0.44954	0.00023165	-1.3948	-0.00071877	-0.94528	-0.00048712	515.3111810356185	20.157	1.0323	19.934	19.68	20.712	-0.22344					57	20	5	0	0	0	0.80003	1	508	508		39.253	3.6345	1	7077600			70250	7979	49266	49345	76522	76522					0.09591656320048969
RSSQERLF	8	Unmodified	_RSSQERLF_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.8443908691406	2	511.772522	1021.53049	-0.38694	-0.00019803	3.429	0.0017548	3.042	0.0015568	511.7737455857221	76.346	0.6458	76.346	76.032	76.678	0					42	15	4	0	0	0	0.027866	1	9442	9442		31.955	2.8053	1	847980	+		70251	24004	49267	49346	76523	76523					0.02058804014961879
RSSQLKFEV	9	Unmodified	_RSSQLKFEV_					0	0	0			REV__nc|ENSG00000163687|Q13609-2|DNASE1L3	REV__nc|ENSG00000163687|Q13609-2|DNASE1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7818603515625	2	547.303655	1092.59276	-0.98744	-0.00054043	4.2306	0.0023154	3.2432	0.001775	547.8077703841512	75.843	0.36014	75.598	75.512	75.872	-0.24455					13	9	2	0	0	0	0.024511	1	9276	9276		25.574	0	1	139970	+		70252	25617	49268	49347	76524	76524					0.0501653036328662
RSSQRRKF	8	Unmodified	_RSSQRRKF_					0	0	0		ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.8082275390625	2	532.807231	1063.59991	0.19433	0.00010354	2.315	0.0012334	2.5093	0.001337	532.8083163927	20.754	0.54245	20.558	20.286	20.828	-0.19577					24	10	3	0	0	0	0.89627	1	582	582		51.335	0.14276	1	299490			70253	12521	49269	49348	76525	76525					0.07065307754373862
RSSRELKM	8	Unmodified	_RSSRELKM_					0	0	0		ENST00000581677.1_1_18:268334-268625:+|nuORF	ENST00000581677.1_1_18:268334-268625:+|nuORF	ENST00000581677.1_1_18:268334-268625:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.76409912109375	2	503.776751	1005.53895	-0.54248	-0.00027329	1.5579	0.00078485	1.0155	0.00051156	504.2790544783364	35.205	0.42691	34.993	34.847	35.274	-0.21246					13	10	2	0	0	0	0.027866	1	2644	2644		53.351	0	1	130680			70254	17169	49270	49349	76526	76526					0.0364003465992937
RSSRELKM	8	Unmodified	_RSSRELKM_					0	0	0		ENST00000581677.1_1_18:268334-268625:+|nuORF	ENST00000581677.1_1_18:268334-268625:+|nuORF	ENST00000581677.1_1_18:268334-268625:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.776751	1005.53895	-0.57201	-0.00028816	5.1435	0.0025912	4.5715	0.002303	504.2792251276547	34.806	0.10983	34.856	34.8	34.91	0.050255	-0.068066	0.00026746	NaN	53.351	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19853			70255	17169	49270	49349							0.0364003465992937
RSSRKAVL	8	Unmodified	_RSSRKAVL_					0	0	0		ENSG00000204311|ENST00000644580|PJVK	ENSG00000204311|ENST00000644580|PJVK	ENSG00000204311|ENST00000644580|PJVK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2694091796875	2	458.787976	915.561398	0.34911	0.00016017	-4.0887	-0.0018759	-3.7396	-0.0017157	458.785896561172	36.616	0.33132	36.616	36.474	36.805	0					11	8	2	0	0	0	0.027866	1	2937	2937		17.365	10.172	1	86497			70256	10329	49271	49350	76527	76527					0.10024002119860143
RSSRRWRRWRW	11	Unmodified	_RSSRRWRRWRW_					0	0	0			REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.2223205566406	4	422.737083	1686.91923	-1.5112	-0.00063884	2.232	0.00094357	0.72085	0.00030473	422.98879530717545	29.603	0.12344	29.603	29.528	29.652	0					4	2	2	0	0	0	0.024888	1	1825	1825		0	0	1	25940	+		70257	29521	49272	49351	76528	76528					0.10324369099384967
RSSRSFRRITL	11	Unmodified	_RSSRSFRRITL_					0	0	0			REV__ENST00000265348.7_1_6:43017711-43017756:-|nuORF	REV__ENST00000265348.7_1_6:43017711-43017756:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.2715759277344	3	460.272381	1377.79531	-0.96108	-0.00044236	-1.1473	-0.00052808	-2.1084	-0.00097043	460.2719498528319	61.077	0.56935	60.901	60.635	61.205	-0.1761					19	13	3	0	0	0	0.99147	1	6829	6829		38.714	4.6276	1	2141900	+		70258	29738	49273	49352	76529	76529					0.1215285348857833
RSSSAADRIK	10	Unmodified	_RSSSAADRIK_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;KIAA1549L|p.T338Lfs*33|1|0.14|ENSG00000110427|chr11:33543465-33543471|CACCCAG/-|frameshift_variant	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.803466796875	2	545.801811	1089.58907	-0.95596	-0.00052176	3.9036	0.0021306	2.9477	0.0016088	545.8037826783913	45.015	0.82416	45.059	44.722	45.546	0.04388					69	23	4	0	0	0	0.78438	1	4268	4268		61.691	6.915	1	4477700			70259	3042	49274	49353	76530	76530					0.0478586058941346
RSSSCHRTW	9	Unmodified	_RSSSCHRTW_					0	0	0			REV__SPTBN2|p.I102Yfs*47|1|0.18|ENSG00000173898|chr11:66715835-66715835|T/-|frameshift_variant	REV__SPTBN2|p.I102Yfs*47|1|0.18|ENSG00000173898|chr11:66715835-66715835|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.7831420898438	2	560.259256	1118.50396	-0.39038	-0.00021871	-3.7541	-0.0021032	-4.1444	-0.002322	560.2572462777634	30.967	0.53194	30.814	30.553	31.085	-0.15231					26	12	3	0	0	0	0.023239	1	2001	2001		84.916	8.1414	1	412570	+		70260	37577	49275	49354	76531	76531					-0.050552081480418565
RSSSGLLEW	9	Unmodified	_RSSSGLLEW_					0	0	0		nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL;ENST00000595804.5_1_19:39327364-39328165:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF	nc|ENSG00000104824|P14866-2|HNRNPL	nc|ENSG00000104824|P14866-2|HNRNPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7667846679688	2	517.766906	1033.51926	0.6463	0.00033463	-0.11915	-6.1691E-05	0.52716	0.00027294	517.7665882014771	59.783	0.80111	59.607	59.158	59.96	-0.1761					49	20	4	0	0	0	0.70156	1	6630	6630		45.972	1.5951	1	2872200			70261	2604	49276	49355	76532	76532					0.0038398192079966975
RSSSLIQHW	9	Unmodified	_RSSSLIQHW_					0	0	0		nc|ENSG00000131849|P52740-2|ZNF132;ENSG00000131849|ENST00000254166|ZNF132	nc|ENSG00000131849|P52740-2|ZNF132	nc|ENSG00000131849|P52740-2|ZNF132	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.8318481445312	2	557.293622	1112.57269	-0.30327	-0.00016901	2.2238	0.0012393	1.9205	0.0010703	557.2939872798992	39.726	0.84595	39.496	39.237	40.083	-0.2302					43	21	3	0	0	0	0.024466	1	3355	3355		18.262	0	1	775810			70262	4556	49277	49356	76533	76533					0.020907794233380628
RSSSPGAGGGH	11	Unmodified	_RSSSPGAGGGH_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2829284667969	2	485.228479	968.442405	-0.7024	-0.00034082	1.1787	0.00057193	0.47629	0.00023111	485.229425067579	21.464	0.23562	21.535	21.401	21.637	0.071489					6	4	2	0	0	0	0.024738	1	616	616		26.693	0	1	22058			70263	4041	49278	49357	76534	76534					-0.04307816575646939
RSSSVKNI	8	Unmodified	_RSSSVKNI_					0	0	0		ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	ENSG00000102098|ENST00000251900|SCML2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.7455749511719	2	445.756341	889.498129	-0.19698	-8.7805E-05	3.7637	0.0016777	3.5667	0.0015899	445.7586247224924	24.634	0.43655	24.459	24.296	24.733	-0.17484					15	9	2	0	0	0	0.027866	1	1089	1089		21.96	0	1	77102			70264	2379	49279	49358	76535	76535					0.048960166119513815
RSSTPLPTI	9	Unmodified	_RSSTPLPTI_					0	0	0		nc|ENSG00000120802|P42166|TMPO;ENST00000547214.1_1_12:98921744-98925696:+|nuORF;nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.27978515625	2	486.279649	970.544745	-0.21967	-0.00010682	-0.28	-0.00013616	-0.49966	-0.00024298	486.2794922319776	50.825	1.5825	50.825	50.084	51.667	0					127	45	5	0	0	0	0.16638	6	5321	5321;5330;5348;5360;5372;5386		95.815	21.299	1	31949000			70265	18218;18219	49280	49359	76536;76537;76538;76539;76540;76541	76536					0.05829456443234449
RSSTPLPTI	9	Unmodified	_RSSTPLPTI_					0	0	0		nc|ENSG00000120802|P42166|TMPO;ENST00000547214.1_1_12:98921744-98925696:+|nuORF;nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.27978515625	2	486.279649	970.544745	-0.28902	-0.00014054	-0.28911	-0.00014059	-0.57813	-0.00028113	486.27951697616965	51.004	1.5073	50.854	50.1	51.608	-0.14916					138	43	6	0	0	0	0.053401	3	5341	5341;5354;5366		127.46	50.615	1	26374000			70266	18218;18219	49280	49359	76542;76543;76544	76542					0.05829456443234449
RSSTPLPTI	9	Unmodified	_RSSTPLPTI_					0	0	0		nc|ENSG00000120802|P42166|TMPO;ENST00000547214.1_1_12:98921744-98925696:+|nuORF;nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2801208496094	2	486.279649	970.544745	-0.91922	-0.000447	0.20239	9.8418E-05	-0.71683	-0.00034858	486.2797419290966	50.659	1.1613	50.74	50.41	51.571	0.08099					92	32	4	0	0	0	0.12914	6	5254	5243;5254;5266;5278;5290;5305		104.06	29.802	1	24648000			70267	18218;18219	49280	49359	76545;76546;76547;76548;76549;76550	76546					0.05829456443234449
RSSTPLPTI	9	Unmodified	_RSSTPLPTI_					0	0	0		nc|ENSG00000120802|P42166|TMPO;ENST00000547214.1_1_12:98921744-98925696:+|nuORF;nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO;nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42166|TMPO	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.279649	970.544745	0.3348	0.00016281	1.5106	0.00073457	1.8454	0.00089737	486.2802270324697	50.76	0.33422	50.648	50.525	50.859	-0.11163	-0.11872	0.0016085	NaN	127.46	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262260			70268	18218;18219	49280	49359							0.05829456443234449
RSSTSGKTY	9	Unmodified	_RSSTSGKTY_					0	0	0			REV__nc|ENSG00000148925|Q9BSF8-2|BTBD10	REV__nc|ENSG00000148925|Q9BSF8-2|BTBD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2815246582031	2	493.748713	985.482873	-0.11041	-5.4517E-05	-0.34145	-0.00016859	-0.45187	-0.00022311	493.7485867657537	25.027	0.43774	24.852	24.598	25.035	-0.17484					14	9	2	0	0	0	0.024427	1	1129	1129		26.693	0	1	77927	+		70269	36773	49281	49360	76551	76551					-0.010448949759052084
RSSVHEFLDYI	11	Unmodified	_RSSVHEFLDYI_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.88812255859375	3	455.898098	1364.67246	-0.5525	-0.00025188	4.2026	0.001916	3.6501	0.0016641	455.9006061353059	37.603	0.45438	37.54	37.342	37.796	-0.063385					13	12	2	0	0	0	0.024768	1	3080	3080		36.528	0	1	276880	+		70270	24415	49282	49361	76552	76552					0.004715522466312905
RSSYRSAPQS	10	Unmodified	_RSSYRSAPQS_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.7820434570312	2	569.783619	1137.55268	-1.277	-0.00072761	-0.016371	-9.3277E-06	-1.2934	-0.00073694	569.7835439428638	24.822	0.64792	24.822	24.563	25.211	0					42	14	4	0	0	0	0.811	1	1111	1111		59.931	10.395	1	1352400	+		70271	19879	49283	49362	76553	76553					-0.01059016307294769
RSSYRSAPQS	10	Unmodified	_RSSYRSAPQS_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.7822265625	2	569.783619	1137.55268	-1.2632	-0.00071973	0.0011074	6.3099E-07	-1.2621	-0.0007191	569.7835210529511	24.872	0.73825	24.837	24.5	25.238	-0.034395					44	16	4	0	0	0	0.57792	1	1107	1107		79.489	9.8615	1	1408800	+		70272	19879	49283	49362	76554	76554					-0.01059016307294769
RSSYRSAPQS	10	Unmodified	_RSSYRSAPQS_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7838134765625	2	569.783619	1137.55268	-0.43441	-0.00024752	-0.17026	-9.7014E-05	-0.60468	-0.00034454	569.7832199404802	25.223	0.48182	24.997	24.623	25.105	-0.22683					25	10	4	0	0	0	0.49336	1	1177	1177		89.029	16.15	1	653340	+		70273	19879	49283	49362	76555	76555					-0.01059016307294769
RSSYRSAPQS	10	Unmodified	_RSSYRSAPQS_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7840576171875	2	569.783619	1137.55268	-0.051575	-2.9387E-05	-0.63163	-0.00035989	-0.68321	-0.00038928	569.7830876263695	24.926	0.56752	24.751	24.34	24.907	-0.17484					35	12	4	0	0	0	0.58878	1	1140	1140		78.264	20.018	1	785620	+		70274	19879	49283	49362	76556	76556					-0.01059016307294769
RSTAEGEADTI	11	Unmodified	_RSTAEGEADTI_					0	0	0			REV__ENST00000560694.1_1_17:78328263-78334101:+|nuORF	REV__ENST00000560694.1_1_17:78328263-78334101:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.8007202148438	2	575.272749	1148.53095	-0.60995	-0.00035089	-1.9356	-0.0011135	-2.5455	-0.0014644	575.2716517451198	43.943	0.33877	43.839	43.622	43.96	-0.10468					12	8	2	0	0	0	0.024756	1	4076	4076		36.447	8.5645	1	116120	+		70275	35152	49284	49363	76557	76557					-0.037378658465058834
RSTAGTYLSK	10	Unmodified	_RSTAGTYLSK_					0	0	0		ENST00000299413.6_1_11:35828022-35828094:+|nuORF	ENST00000299413.6_1_11:35828022-35828094:+|nuORF	ENST00000299413.6_1_11:35828022-35828094:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.2951049804688	2	542.293288	1082.57202	3.2511	0.0017631	0.94073	0.00051015	4.1919	0.0022732	542.2936863791565	18.412	1.8912	18.475	18.222	20.113	0.063307					66	38	4	0	0	0	1.1228	1	281	281		22.58	1.6327	1	653300			70276	11882	49285	49364	76558	76558					0.03403939983604687
RSTALHQL	8	Unmodified	_RSTALHQL_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.797119140625	2	463.264333	924.514114	-0.51596	-0.00023903	-0.11142	-5.1617E-05	-0.62738	-0.00029064	463.26403621899266	32.692	0.40526	32.704	32.45	32.855	0.011795					14	10	2	0	0	0	0.027866	1	2235	2235		31.955	8.9124	1	86521	+		70277	22237	49286	49365	76559	76559					0.04883722848865091
RSTALHQL	8	Unmodified	_RSTALHQL_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.264333	924.514114	-0.69767	-0.00032321	0.90791	0.0004206	0.21024	9.7397E-05	463.2644774459942	32.82	0.37362	32.82	32.606	32.979	0	-0.0020448	0.0018189	NaN	24.203	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117820	+		70278	22237	49286	49365							0.04883722848865091
RSTALHQL	8	Unmodified	_RSTALHQL_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	463.264333	924.514114	0.56074	0.00025977	-0.68965	-0.00031949	-0.12891	-5.9721E-05	463.26396337165136	32.601	0.41616	32.664	32.428	32.845	0.062885	-0.1584	0.00033872	NaN	24.203	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114910	+		70279	22237	49286	49365							0.04883722848865091
RSTALHQL	8	Unmodified	_RSTALHQL_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.264333	924.514114	-0.17644	-8.1739E-05	-1.7042	-0.00078952	-1.8807	-0.00087126	463.26197053079636	33.063	0.28632	32.832	32.67	32.956	-0.23107	0.0095038	-0.00060133	NaN	24.203	9	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40389	+		70280	22237	49286	49365							0.04883722848865091
RSTALHQL	8	Unmodified	_RSTALHQL_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.264333	924.514114	-0.10004	-4.6347E-05	-4.7814	-0.0022151	-4.8815	-0.0022614	463.26253002629204	33.291	0.35762	33.091	32.813	33.171	-0.20019	0.26898	-0.0034524	NaN	24.203	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41349	+		70281	22237	49286	49365							0.04883722848865091
RSTDITPI	8	Unmodified	_RSTDITPI_					0	0	0			REV__ENST00000453839.5_1_2:61014200-61024278:+|nuORF	REV__ENST00000453839.5_1_2:61014200-61024278:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2718200683594	2	451.750724	901.486896	0.25916	0.00011707	-1.9937	-0.00090066	-1.7346	-0.00078359	451.75055546396635	56.64	0.57606	56.438	56.171	56.747	-0.20208					33	14	4	0	0	0	0.027866	1	6175	6175		40.573	0	1	365850	+		70282	22203	49287	49366	76560	76560					0.03221194517800541
RSTDRVLQ	8	Unmodified	_RSTDRVLQ_					0	0	0		ENSG00000165516|ENST00000298307|KLHDC2;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	ENSG00000165516|ENST00000298307|KLHDC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7903747558594	2	487.772522	973.530492	-0.40732	-0.00019868	0.14728	7.1838E-05	-0.26004	-0.00012684	487.7729487001196	31.871	0.20128	31.883	31.742	31.943	0.011797					6	4	2	0	0	0	0.027866	1	2152	2152		20.947	0	1	63833			70283	7424	49288	49367	76561	76561					0.042668040149465014
RSTDVALLV	9	Unmodified	_RSTDVALLV_					0	0	0		ENSG00000204913|ENST00000377924|LRRC3C	ENSG00000204913|ENST00000377924|LRRC3C	ENSG00000204913|ENST00000377924|LRRC3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2864990234375	2	487.287474	972.560395	0.38041	0.00018537	-1.2737	-0.00062066	-0.89328	-0.00043529	487.286738043634	49.352	0.61775	49.352	49.039	49.656	0					37	16	3	0	0	0	0.70186	1	5099	5099		45.952	3.5558	1	1826000			70284	10389	49289	49368	76562	76562					0.07301742960282809
RSTDVSQRHLD	11	Unmodified	_RSTDVSQRHLD_					0	0	0		nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-2|JADE1	nc|ENSG00000077684|Q6IE81-2|JADE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.2636413574219	3	438.556735	1312.64838	-0.29961	-0.0001314	3.462	0.0015183	3.1623	0.0013869	438.55801218975705	41.251	0.46831	41.023	40.807	41.275	-0.2278					16	11	2	0	0	0	0.024735	1	3594	3594		16.53	2.4438	1	102830			70285	1620	49290	49369	76563	76563					0.004557118129696391
RSTDVSQRHLD	11	Unmodified	_RSTDVSQRHLD_					0	0	0		nc|ENSG00000077684|Q6IE81-2|JADE1;ENSG00000077684|ENST00000226319|JADE1	nc|ENSG00000077684|Q6IE81-2|JADE1	nc|ENSG00000077684|Q6IE81-2|JADE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	438.556735	1312.64838	-0.16969	-7.4418E-05	1.7447	0.00076517	1.5751	0.00069075	438.5572810713961	41.427	0.31052	41.197	41.003	41.313	-0.2303	0.086916	-0.0017818	NaN	16.53	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68807			70286	1620	49290	49369							0.004557118129696391
RSTELDSNW	9	Unmodified	_RSTELDSNW_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.2566528320312	2	554.256902	1106.49925	-0.91433	-0.00050677	0.5924	0.00032834	-0.32193	-0.00017843	554.2570709536487	44.99	0.77628	44.891	44.513	45.289	-0.099449					45	20	4	0	0	0	0.09527	1	4231	4231		112.11	37.852	1	1819100			70287	10794	49291	49370	76564	76564					-0.049738138098064155
RSTELDSNW	9	Unmodified	_RSTELDSNW_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.2569580078125	2	554.256902	1106.49925	-0.27877	-0.00015451	-0.10909	-6.0464E-05	-0.38787	-0.00021498	554.2567571569907	45.218	0.64402	44.966	44.748	45.392	-0.25252					45	17	4	0	0	0	0.11727	2	4261	4248;4261		106.68	37.055	1	2098400			70288	10794	49291	49370	76565;76566	76566					-0.049738138098064155
RSTELDSNW	9	Unmodified	_RSTELDSNW_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.2564697265625	2	554.256902	1106.49925	-0.51297	-0.00028432	0.19859	0.00011007	-0.31438	-0.00017425	554.2569066172903	45.217	0.60114	45.006	44.715	45.316	-0.21109					41	16	3	0	0	0	0.18694	1	4255	4255		91.265	8.9602	1	2051500			70289	10794	49291	49370	76567	76567					-0.049738138098064155
RSTGFFSQV	9	Unmodified	_RSTGFFSQV_					0	0	0			REV__ENST00000500538.6_1_4:68586658-68594368:+|nuORF	REV__ENST00000500538.6_1_4:68586658-68594368:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2981567382812	2	514.761623	1027.50869	-0.27017	-0.00013907	1.9798	0.0010191	1.7096	0.00088004	514.7614575808353	52.943	0.52339	52.796	52.645	53.168	-0.14723					18	13	2	0	0	0	0.024405	1	5654	5654		27.882	5.9224	1	116690	+		70290	33907	49292	49371	76568	76568					-0.003960007336218041
RSTGLTLTL	9	Unmodified	_RSTGLTLTL_					0	0	0			REV__ENST00000420353.6_1_12:53910483-53910921:-|nuORF	REV__ENST00000420353.6_1_12:53910483-53910921:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2870178222656	2	481.287474	960.560395	0.2044	9.8375E-05	-1.3491	-0.00064929	-1.1447	-0.00055092	481.2866224222848	18.753	0.48959	18.621	18.401	18.891	-0.13147					17	9	3	0	0	0	0.97455	1	316	316		25.574	4.6271	1	103490	+		70291	32163	49293	49372	76569	76569					0.07853742960276122
RSTHLSESESL	11	Unmodified	_RSTHLSESESL_					0	0	0		ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-3|FAM221B	ENSG00000204930|ENST00000423537|FAM221B	ENSG00000204930|ENST00000423537|FAM221B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2389221191406	3	415.873841	1244.59969	-0.45862	-0.00019073	-0.59864	-0.00024896	-1.0573	-0.00043969	416.20806507936624	41.978	0.17855	41.746	41.658	41.837	-0.23186					7	4	2	0	0	0	0.024746	1	3748	3748		35.496	8.8027	1	193280			70292	10391	49294	49373	76570	76570					-0.01282201546791839
RSTIKQKLLR	10	Unmodified	_RSTIKQKLLR_					0	0	0		ENST00000369303.8_1_6:94129094-94129226:-|nuORF	ENST00000369303.8_1_6:94129094-94129226:-|nuORF	ENST00000369303.8_1_6:94129094-94129226:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.4031372070312	2	621.903871	1241.79319	0.31982	0.0001989	-4.2934	-0.0026701	-3.9735	-0.0024712	622.4027589150551	105.92	0.44003	105.92	105.73	106.17	-0.0013123					35	15	4	0	0	0	1.1068	1	13541	13541		14.137	0.68308	1	756240			70293	12920	49295	49374	76571	76571					0.1819642475074943
RSTKLPLSV	9	Unmodified	_RSTKLPLSV_					0	0	0			REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2904357910156	2	500.811116	999.60768	0.30518	0.00015284	-0.66732	-0.0003342	-0.36213	-0.00018136	500.81064673099377	19.517	0.4443	19.356	19.134	19.578	-0.16079					13	8	2	0	0	0	0.024523	1	457	457		29.15	1.2673	1	105710	+		70294	28262	49296	49375	76572	76572					0.10786022231275183
RSTKLPLSV	9	Unmodified	_RSTKLPLSV_					0	0	0			REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.811116	999.60768	0.77437	0.00038781	-0.69114	-0.00034613	0.083225	4.168E-05	500.81058364305306	19.581	0.39785	19.381	19.206	19.603	-0.2001	0.034973	5.3922E-05	NaN	29.15	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86850	+		70295	28262	49296	49375							0.10786022231275183
RSTKLPLSV	9	Unmodified	_RSTKLPLSV_					0	0	0			REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	REV__nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.811116	999.60768	1.0497	0.00052572	-1.0007	-0.00050118	0.048991	2.4535E-05	500.8103465575001	19.533	0.29733	19.3	19.176	19.473	-0.23345	-0.045533	-0.00025618	NaN	29.15	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32507	+		70296	28262	49296	49375							0.10786022231275183
RSTKVLPKG	9	Unmodified	_RSTKVLPKG_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.7481689453125	2	493.311284	984.608014	0.4254	0.00020985	-0.8247	-0.00040683	-0.3993	-0.00019698	493.31088367663347	50.141	1.0762	49.961	49.458	50.534	-0.18071					45	28	3	0	0	0	0.024541	1	5165	5165		10.265	6.8552	1	1235000	+		70297	27159	49297	49376	76573	76573					0.11509441951136523
RSTKVLPKG	9	Unmodified	_RSTKVLPKG_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.311284	984.608014	-0.19562	-9.6501E-05	-0.23076	-0.00011384	-0.42638	-0.00021034	493.3110077846795	50.009	0.41664	49.903	49.671	50.088	-0.10558	-0.044692	0.00037161	NaN	25.574	28	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1357300	+		70298	27159	49297	49376							0.11509441951136523
RSTKVLPKG	9	Unmodified	_RSTKVLPKG_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.311284	984.608014	0.11444	5.6455E-05	-0.73304	-0.00036162	-0.6186	-0.00030516	493.3107426116865	50.26	0.6001	49.98	49.621	50.221	-0.27977	0.031919	-0.00012396	NaN	25.574	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1369200	+		70299	27159	49297	49376							0.11509441951136523
RSTLAMDTT	9	Unmodified	_RSTLAMDTT_					0	0	0		ENSG00000268738|ENST00000598963|HSFX2;ENSG00000171116|ENST00000370416|HSFX1	ENSG00000268738|ENST00000598963|HSFX2	ENSG00000268738|ENST00000598963|HSFX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.80389404296875	2	498.244949	994.475345	0.0086301	4.2999E-06	-0.17483	-8.7107E-05	-0.1662	-8.2807E-05	498.24478025525366	53.451	0.3689	53.192	53.039	53.408	-0.25838					15	9	2	0	0	0	0.024427	1	5585	5585		26.693	3.6504	1	191630			70300	8114	49298	49377	76574	76574					-0.022113705678521
RSTLGLVVL	9	Unmodified	_RSTLGLVVL_					0	0	0		ENST00000574549.5_1_16:3074279-3075745:+|nuORF;ENST00000574957.1_1_16:3074279-3075849:+|nuORF;ENST00000576143.5_1_16:3074279-3076060:+|nuORF;ENST00000571046.1_1_16:3074279-3076290:+|nuORF;ENST00000574498.5_1_16:3074279-3076221:+|nuORF	ENST00000574549.5_1_16:3074279-3075745:+|nuORF	ENST00000574549.5_1_16:3074279-3075745:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7737731933594	2	479.30821	956.601866	-0.17819	-8.5407E-05	0.35802	0.0001716	0.17983	8.6194E-05	479.30824302755184	46.707	0.92231	46.438	45.807	46.73	-0.26939					41	24	3	0	0	0	0.024412	1	4519	4519		24.203	0	1	868680			70301	17033	49299	49378	76575	76575					0.12182923719615246
RSTLNRVE	8	Unmodified	_RSTLNRVE_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7645568847656	2	487.772522	973.530492	-0.31443	-0.00015337	-4.2194	-0.0020581	-4.5339	-0.0022115	487.7705403589986	43.294	0.71204	43.182	42.576	43.288	-0.11253					23	18	2	0	0	0	0.027866	1	3943	3943		23.042	0	1	113300	+		70302	29012	49300	49379	76576	76576					0.042668040149465014
RSTLVLPAV	9	Unmodified	_RSTLVLPAV_					0	0	0			REV__nc|ENSG00000132824|Q13530-2|SERINC3	REV__nc|ENSG00000132824|Q13530-2|SERINC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7939758300781	2	478.300384	954.586216	-0.90661	-0.00043363	0.89181	0.00042655	-0.014797	-7.0776E-06	478.3006376107506	65.193	0.52207	64.931	64.65	65.172	-0.2626					20	13	2	0	0	0	0.024323	1	7665	7665		53.351	10.877	1	841360	+		70303	23322	49301	49380	76577	76577					0.10710637202555517
RSTPALNPGL	10	Unmodified	_RSTPALNPGL_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7164916992188	2	513.290548	1024.56654	-0.95826	-0.00049187	4.4272	0.0022724	3.4689	0.0017806	513.2928193735013	55.713	0.83743	55.498	55.201	56.038	-0.21551					50	22	3	0	0	0	0.03519	1	6013	6013		37.812	7.97	1	555150	+		70304	27738	49302	49381	76578	76578					0.05524261191817459
RSTPALNPGL	10	Unmodified	_RSTPALNPGL_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.290548	1024.56654	-1.0049	-0.00051582	4.865	0.0024971	3.8601	0.0019813	513.2928392396786	55.628	0.57597	55.471	55.244	55.82	-0.15656	-0.0091981	0.00034817	NaN	37.812	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726760	+		70305	27738	49302	49381							0.05524261191817459
RSTPALNPGL	10	Unmodified	_RSTPALNPGL_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.290548	1024.56654	-0.12519	-6.426E-05	3.9214	0.0020128	3.7962	0.0019486	513.2924395812391	55.689	0.79299	55.472	55.205	55.998	-0.21607	-0.0080143	-0.0006205	NaN	37.812	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662370	+		70306	27738	49302	49381							0.05524261191817459
RSTPAPPPLD	10	Unmodified	_RSTPAPPPLD_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.797607421875	2	525.782556	1049.55056	-0.56693	-0.00029808	1.7332	0.00091129	1.1663	0.00061321	525.7838940215291	40.661	1.2446	40.661	39.627	40.871	0					48	34	3	0	0	0	0.03519	1	3448	3448		52.937	29.414	1	464300	+		70307	21528	49303	49382	76579	76579					0.027765549549030766
RSTPRLPGPG	10	Unmodified	_RSTPRLPGPG_					0	0	0		ENST00000521244.1_1_1:178511933-178514557:+|nuORF;ENST00000367638.1_1_1:178514055-178514557:+|nuORF	ENST00000521244.1_1_1:178511933-178514557:+|nuORF	ENST00000521244.1_1_1:178511933-178514557:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2916870117188	2	519.296165	1036.57778	-0.064075	-3.3274E-05	3.1688	0.0016455	3.1047	0.0016123	519.2976159279837	72.803	0.45747	72.813	72.57	73.027	0.0096512					16	10	2	0	0	0	0.03519	1	8813	8813		21.686	5.2126	1	105850			70308	12872	49304	49383	76580	76580					0.06095083285936198
RSTQQTTEW	9	Unmodified	_RSTQQTTEW_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.7699584960938	2	568.770177	1135.5258	0.12685	7.2151E-05	0.08548	4.8618E-05	0.21233	0.00012077	568.7700131819081	32.01	0.72289	31.773	31.45	32.173	-0.23667					48	16	4	0	0	0	0.079716	1	2186	2186		117.81	38.36	1	963390			70309	9358	49305	49384	76581	76581					-0.03654124918512025
RSTQQTTEW	9	Unmodified	_RSTQQTTEW_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.7696533203125	2	568.770177	1135.5258	0.22286	0.00012676	-0.0070108	-3.9876E-06	0.21585	0.00012277	568.7698998453185	31.986	0.8209	31.793	31.472	32.293	-0.19261					42	18	3	0	0	0	0.247	2	2166	2166;2178		82.75	18.543	1	916850			70310	9358	49305	49384	76582;76583	76582					-0.03654124918512025
RSTRLLSH	8	Unmodified	_RSTRLLSH_					0	0	0		ENST00000443602.2_1:149674009-149674339:+|nuORF	ENST00000443602.2_1:149674009-149674339:+|nuORF	ENST00000443602.2_1:149674009-149674339:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2557373046875	2	485.283057	968.551562	-0.48068	-0.00023327	4.305	0.0020892	3.8243	0.0018559	485.28491360727793	52.952	0.71895	52.952	52.513	53.232	0					30	18	2	0	0	0	0.027866	1	5733	5733		18.324	0	1	221540			70311	14401	49306	49385	76584	76584					0.06602814114467037
RSTSEKSK	8	Unmodified	_RSTSEKSK_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.27490234375	2	461.751256	921.487959	0.25353	0.00011707	1.1036	0.00050959	1.3571	0.00062666	461.753159777627	21.204	0.39294	21.013	20.833	21.226	-0.19072					14	7	3	0	0	0	0.027866	1	618	618		49.442	20.292	1	20997			70312	18548	49307	49386	76585	76585					0.02407408886722351
RSTSNALLL	9	Unmodified	_RSTSNALLL_					0	0	0			REV__ENST00000430853.5_1_22:28315467-28385927:+|nuORF	REV__ENST00000430853.5_1_22:28315467-28385927:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2850646972656	2	487.785099	973.555644	-0.39019	-0.00019033	-0.67061	-0.00032711	-1.0608	-0.00051744	487.78705777905816	52.745	0.76851	52.745	52.391	53.16	0					53	19	4	0	0	0	0.48817	1	5644	5644		60.118	6.7668	1	2012900	+		70313	32361	49308	49387	76586	76586					0.06780858817523949
RSTSNALLL	9	Unmodified	_RSTSNALLL_					0	0	0			REV__ENST00000430853.5_1_22:28315467-28385927:+|nuORF	REV__ENST00000430853.5_1_22:28315467-28385927:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	487.785099	973.555644	-0.39019	-0.00019033	-0.67061	-0.00032711	-1.0608	-0.00051744	487.78705777905816	52.745	0.76851	52.745	52.391	53.16	0	0	0	NaN	60.118	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2012900	+		70314	32361	49308	49387							0.06780858817523949
RSTSVPAPYI	10	Unmodified	_RSTSVPAPYI_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.7974853515625	2	545.798206	1089.58186	-0.17658	-9.6375E-05	-2.71	-0.0014791	-2.8866	-0.0015755	545.7966639561984	17.301	0.22772	17.159	17.048	17.276	-0.14278					7	4	2	0	0	0	1.1329	1	145	145		27.882	1.1893	1	42542			70315	774	49309	49388	76587	76587					0.04065127988974382
RSTTGTAN	8	Unmodified	_RSTTGTAN_					0	0	0			REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.23236083984375	2	404.201399	806.388245	-0.96428	-0.00038976	2.3303	0.00094192	1.3661	0.00055216	404.2022638629022	81.977	0.55744	81.837	81.572	82.13	-0.14014					16	12	2	0	0	0	0.027866	1	9818	9818		19.997	3.5236	1	70436	+		70316	19074	49310	49389	76588	76588					-0.022694087272384422
RSTTGTAN	8	Unmodified	_RSTTGTAN_					0	0	0			REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	REV__ADGRB3|p.G1063Vfs*3|1|0.38|ENSG00000135298|chr6:69333005-69333005|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.201399	806.388245	1.5834	0.00064002	0.67877	0.00027436	2.2622	0.00091438	404.2013472439233	81.812	0.32022	81.838	81.619	81.94	0.025711	0.0052096	-0.00099363	NaN	19.997	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50221	+		70317	19074	49310	49389							-0.022694087272384422
RSTTLLAL	8	Unmodified	_RSTTLLAL_					0	0	0		ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	ENSG00000182450|ENST00000422670|KCNK4	ENSG00000182450|ENST00000422670|KCNK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.7714538574219	2	437.77146	873.528367	1.1612	0.00050836	-1.0485	-0.00045899	0.11277	4.9369E-05	437.770880670098	22.74	0.55439	22.538	22.285	22.84	-0.20199					27	11	3	0	0	0	1.043	1	817	817		30.504	1.3541	1	394400			70318	9137	49311	49390	76589	76589					0.08654375277126292
RSTVRQKV	8	Unmodified	_RSTVRQKV_					0	0	0		nc|ENSG00000089225|Q99593-2|TBX5;nc|ENSG00000089225|Q99593-3|TBX5;ENSG00000089225|ENST00000405440|TBX5	nc|ENSG00000089225|Q99593-2|TBX5	nc|ENSG00000089225|Q99593-2|TBX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2304382324219	2	487.298707	972.582862	-0.30772	-0.00014995	3.2661	0.0015916	2.9584	0.0014416	487.3002012996616	31.304	0.57599	31.119	30.824	31.4	-0.18503					24	14	2	0	0	0	0.027866	1	2082	2082		27.882	0	1	260210			70319	1903	49312	49391	76590	76590					0.09547387148563757
RSTVSALGTVL	11	Unmodified	_RSTVSALGTVL_					0	0	0			REV__nc|ENSG00000171109|Q8IWA4-3|MFN1	REV__nc|ENSG00000171109|Q8IWA4-3|MFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7830810546875	2	552.324588	1102.63462	-0.41368	-0.00022849	-3.2411	-0.0017902	-3.6548	-0.0020186	552.3229350721747	41.937	0.7104	41.705	41.193	41.904	-0.23186					27	18	2	0	0	0	0.024768	1	3659	3659		24.519	0	1	283080	+		70320	26544	49313	49392	76591	76591					0.08741086051804814
RSTYPGTAAL	10	Unmodified	_RSTYPGTAAL_					0	0	0		ENST00000345016.9_1_19:2101821-2102175:-|nuORF	ENST00000345016.9_1_19:2101821-2102175:-|nuORF	ENST00000345016.9_1_19:2101821-2102175:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2357177734375	2	518.774731	1035.53491	-0.096808	-5.0222E-05	2.5005	0.0012972	2.4037	0.001247	519.2771347440895	26.669	0.33691	26.501	26.301	26.638	-0.16816					11	7	2	0	0	0	0.03519	1	1403	1403		21.686	6.8209	1	38879			70321	12557	49314	49393	76592	76592					0.018562684378593985
RSVAAKLER	9	Unmodified	_RSVAAKLER_					0	0	0		ENST00000406877.7_1_7:21985619-21985700:-|nuORF	ENST00000406877.7_1_7:21985619-21985700:-|nuORF	ENST00000406877.7_1_7:21985619-21985700:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.27099609375	2	515.311815	1028.60908	-0.27803	-0.00014327	3.5382	0.0018233	3.2602	0.00168	515.3134157322584	48.892	0.43926	48.71	48.521	48.96	-0.18206					20	11	2	0	0	0	0.024456	1	4913	4913		28.081	7.1346	1	347630			70322	13740	49315	49394	76593	76593					0.09591656320048969
RSVAKARVK	9	Unmodified	_RSVAKARVK_					0	0	0		ENST00000510104.5_1_5:140071123-140075505:+|nuORF	ENST00000510104.5_1_5:140071123-140075505:+|nuORF	ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8134765625	2	507.830175	1013.6458	-0.14665	-7.4472E-05	4.1986	0.0021322	4.052	0.0020577	507.832987681867	92.926	0.1713	92.804	92.712	92.883	-0.12225					5	3	2	0	0	0	0.024541	1	11440	11440		14.137	5.3148	1	15942			70323	15816	49316	49395	76594	76594					0.13951952936611178
RSVALRTE	8	Unmodified	_RSVALRTE_					0	0	0			REV__ENSG00000163539|ENST00000682230|CLASP2;REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__ENSG00000163539|ENST00000682230|CLASP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.2629699707031	2	466.269616	930.524678	0.80901	0.00037722	-4.3232	-0.0020158	-3.5142	-0.0016386	466.26759405894694	51.273	0.38775	51.092	50.834	51.222	-0.18071					14	9	2	0	0	0	0.027866	1	5221	5221		29.17	0	1	105040	+		70324	25589;20518	49317	49396	76595	76595					0.05663705503297933
RSVALVHR	8	Unmodified	_RSVALVHR_					0	0	0		ENST00000557989.1_1_15:30115015-30115315:+|nuORF	ENST00000557989.1_1_15:30115015-30115315:+|nuORF	ENST00000557989.1_1_15:30115015-30115315:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.26605224609375	2	469.288143	936.561733	-1.3992	-0.00065665	4.4374	0.0020824	3.0381	0.0014257	469.2900348830864	33.587	0.67333	33.421	33.195	33.869	-0.16565					23	16	2	0	0	0	0.027866	1	2371	2371		18.324	0	1	278760			70325	16743	49318	49397	76596	76596					0.09091421839707436
RSVAQFSN	8	Unmodified	_RSVAQFSN_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7903137207031	2	454.732866	907.451179	-0.26678	-0.00012131	1.3233	0.00060173	1.0565	0.00048042	454.7331779240434	25.514	0.78981	25.514	25.211	26.001	0					52	18	5	0	0	0	0.027866	1	1231	1231		19.997	5.8596	1	173810	+		70326	23546	49319	49398	76597	76597					-0.006248429391916943
RSVASFFSY	9	Unmodified	_RSVASFFSY_					0	0	0		ENST00000593460.1_1_19:18119399-18119966:+|nuORF	ENST00000593460.1_1_19:18119399-18119966:+|nuORF	ENST00000593460.1_1_19:18119399-18119966:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.784912109375	2	532.263999	1062.51345	-0.56225	-0.00029927	-2.2517	-0.0011985	-2.8139	-0.0014977	532.763143365943	46.145	0.10746	46.145	46.056	46.163	0					4	2	2	0	0	0	0.02435	1	4537	4537		51.335	0	1	69498			70327	17392	49320	49399	76598	76598					-0.01531116590831516
RSVASIDSVD	10	Unmodified	_RSVASIDSVD_					0	0	0			REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	524.7673950195312	2	524.767103	1047.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.083	1	23.902	23.402	24.402	-0.18089								0	0	0	0.39651	1	990	990		71.877	13.096	1		+		70328	27018	49321	49400	76599	76599					-0.0022064314998715417
RSVCLAAL	8	Unmodified	_RSVCLAAL_					0	0	0			REV__ENST00000219334.9_1_16:68405746-68406052:-|nuORF	REV__ENST00000219334.9_1_16:68405746-68406052:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.5582275390625	2	416.739105	831.463658	0.36849	0.00015356	-3.5122	-0.0014637	-3.1437	-0.0013101	416.7373774477334	24.616	0.5495	24.694	24.455	25.005	0.078344					20	11	2	0	0	0	0.027866	1	1021	1021		19.36	11.67	1	104420	+		70329	29338	49322	49401	76600	76600					0.04118477199494919
RSVDVTNTTF	10	Unmodified	_RSVDVTNTTF_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.2877197265625	2	570.288202	1138.56185	0.1389	7.9213E-05	-0.38474	-0.00021941	-0.24584	-0.0001402	570.2878307442634	46.45	0.45625	46.353	46.152	46.608	-0.096649					31	12	3	0	0	0	0.44975	1	4483	4483		93.598	19.343	1	2133400			70330	2705	49323	49402	76601	76601					-0.0018866774162233924
RSVDVTNTTF	10	Unmodified	_RSVDVTNTTF_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2884521484375	2	570.288202	1138.56185	0.060293	3.4384E-05	-0.76812	-0.00043805	-0.70783	-0.00040367	570.287653821289	46.742	0.60912	46.472	46.192	46.801	-0.26939					45	16	4	0	0	0	0.34816	2	4501	4501;4511		104.01	21.773	1	2975400			70331	2705	49323	49402	76602;76603	76602					-0.0018866774162233924
RSVDVTNTTF	10	Unmodified	_RSVDVTNTTF_					0	0	0		ENST00000597026.5_1_19:19017767-19023834:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.2877197265625	2	570.288202	1138.56185	-0.51086	-0.00029134	-0.56887	-0.00032442	-1.0797	-0.00061575	570.2876731778472	46.565	0.91145	46.371	46.165	47.077	-0.19387					59	25	5	0	0	0	0.27169	2	4481	4481;4494		112.11	18.964	1	3425300			70332	2705	49323	49402	76604;76605	76604					-0.0018866774162233924
RSVEADRSMA	10	Unmodified	_RSVEADRSMA_					0	0	0			REV__ENST00000378797.6_2_13:46916770-46916875:-|nuORF	REV__ENST00000378797.6_2_13:46916770-46916875:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2694702148438	2	561.272029	1120.52951	-1.2106	-0.00067947	-3.357	-0.0018842	-4.5676	-0.0025637	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	0.99657	1	1275	1275		46.457	5.6786	1	242840000	+		70333	31417	49324	49403	76606	76606					-0.02593778416257919
RSVEPPPSW	9	Unmodified	_RSVEPPPSW_					0	0	0			REV__ENSG00000131069|ENST00000360596|ACSS2	REV__ENSG00000131069|ENST00000360596|ACSS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3115234375	2	527.769448	1053.52434	-1.2922	-0.00068199	-1.9754	-0.0010426	-3.2676	-0.0017246	527.768106156723	20.18	0.77951	20.18	19.689	20.468	0					23	15	2	0	0	0	0.024263	1	525	525		60.972	4.2509	1	28607	+		70334	23187	49325	49404	76607	76607					-0.00027714216571439465
RSVFFPIII	9	Unmodified	_RSVFFPIII_					0	0	0			REV__ENSG00000123643|ENST00000243389|SLC36A1	REV__ENSG00000123643|ENST00000243389|SLC36A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2653198242188	2	546.334227	1090.6539	-1.4384	-0.00078583	-2.5631	-0.0014003	-4.0015	-0.0021861	546.3326986073128	26.194	0.14959	26.031	25.951	26.101	-0.16331					7	4	2	0	0	0	0.024354	1	1295	1295		38.806	12.113	1	67669	+		70335	22715	49326	49405	76608	76608					0.11220087133369816
RSVGLPIGL	9	Unmodified	_RSVGLPIGL_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2;MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.2876892089844	2	456.287277	910.560001	-1.1	-0.00050193	0.92548	0.00042228	-0.17456	-7.9648E-05	456.28768783621194	29.079	0.65125	28.834	28.534	29.185	-0.24524					41	14	4	0	0	0	0.59099	1	1760	1760		53.351	1.0523	1	584400			70336	1040	49327	49406	76609	76609					0.10114368031076992
RSVGLPIGL	9	Unmodified	_RSVGLPIGL_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2;MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.287277	910.560001	-0.46517	-0.00021225	-0.025097	-1.1451E-05	-0.49027	-0.0002237	456.28735743814275	29.013	0.73353	28.84	28.55	29.284	-0.17258	-0.024733	-0.00044155	NaN	53.351	48	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501700			70337	1040	49327	49406							0.10114368031076992
RSVGLPIGL	9	Unmodified	_RSVGLPIGL_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2;MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.287277	910.560001	-0.29627	-0.00013518	0.45358	0.00020696	0.15731	7.178E-05	456.2872193276367	29.071	0.63936	28.921	28.615	29.254	-0.14952	0.056017	-4.7164E-06	NaN	53.351	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555530			70338	1040	49327	49406							0.10114368031076992
RSVGLSTRTP	10	Unmodified	_RSVGLSTRTP_					0	0	0		ENST00000474221.5_1_11:291561-291933:+|nuORF	ENST00000474221.5_1_11:291561-291933:+|nuORF	ENST00000474221.5_1_11:291561-291933:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2467651367188	2	537.306729	1072.59891	-0.096954	-5.2094E-05	3.0921	0.0016614	2.9952	0.0016093	537.308372993998	56.607	0.8881	56.405	55.859	56.747	-0.20209					43	22	4	0	0	0	0.03519	1	6054	6054		60.118	10.677	1	508770			70339	15025	49328	49407	76610	76610					0.06551048594815256
RSVHLLRIP	9	Unmodified	_RSVHLLRIP_					0	0	0		ENST00000487159.5_2_3:42055459-42128703:+|nuORF	ENST00000487159.5_2_3:42055459-42128703:+|nuORF	ENST00000487159.5_2_3:42055459-42128703:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7765502929688	2	545.845825	1089.6771	-0.68299	-0.0003728	2.9225	0.0015952	2.2395	0.0012224	545.8472787290007	52.105	0.60055	52.105	51.871	52.472	0					34	15	3	0	0	0	0.024539	1	5614	5614		27.882	3.6795	1	445010			70340	15359	49329	49408	76611	76611					0.13584525970691175
RSVHNHLTS	9	Unmodified	_RSVHNHLTS_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7960205078125	2	525.775597	1049.53664	-0.10662	-5.6056E-05	0.90702	0.00047689	0.80041	0.00042083	525.7757807992457	52.298	0.30824	52.151	52.057	52.366	-0.14735					13	7	2	0	0	0	0.024506	1	5572	5572		23.042	3.939	1	322010			70341	6618	49330	49409	76612	76612					0.01385322246483156
RSVIEDVIN	9	Unmodified	_RSVIEDVIN_					0	0	0		ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	ENSG00000165417|ENST00000553612|GTF2A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8341674804688	2	522.787838	1043.56112	0.20639	0.0001079	4.1723	0.0021812	4.3787	0.0022891	522.7896650743611	69.378	0.48672	69.085	68.825	69.312	-0.29292					20	12	3	0	0	0	0.024017	1	8337	8337		65.465	26.213	1	308990			70342	7412	49331	49410	76613	76613					0.04108537609340601
RSVIIGNV	8	Unmodified	_RSVIIGNV_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2693786621094	2	429.263802	856.513051	0.057453	2.4662E-05	-0.46305	-0.00019877	-0.4056	-0.00017411	429.26347398668975	41.068	0.92257	41.068	40.8	41.722	0					71	25	4	0	0	0	0.027866	1	3622	3622		25.45	3.7478	1	5264900	+		70343	28494	49332	49411	76614	76614					0.0790550847995064
RSVIIGNV	8	Unmodified	_RSVIIGNV_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.26971435546875	2	429.263802	856.513051	0.32392	0.00013905	-0.78581	-0.00033732	-0.46189	-0.00019827	429.26328978590385	41.215	1.2006	41.092	40.762	41.962	-0.12317					79	33	5	0	0	0	0.027866	1	3635	3635		25.45	13.243	1	5128900	+		70344	28494	49332	49411	76615	76615					0.0790550847995064
RSVIPPLP	8	Unmodified	_RSVIPPLP_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2587890625	2	439.776545	877.538538	0.053154	2.3376E-05	0.1748	7.6871E-05	0.22795	0.00010025	439.7764395484637	58.556	0.58552	58.369	58.173	58.758	-0.18705					35	15	3	0	0	0	0.027866	1	6626	6626		26.796	5.0938	1	1057600			70345	9888	49333	49412	76616	76616					0.09486983002375382
RSVKKYSI	8	Unmodified	_RSVKKYSI_					0	0	0		ENSG00000143498|ENST00000352967|TAF1A;nc|ENSG00000143498|Q15573-2|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	ENSG00000143498|ENST00000352967|TAF1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7963562011719	2	490.798009	979.581465	-0.3283	-0.00016113	3.937	0.0019323	3.6087	0.0017711	490.799737254206	47.838	1.0168	47.838	47.361	48.378	0					50	30	2	0	0	0	0.027866	1	4833	4833		27.882	0	1	1029100			70346	5655	49334	49413	76617	76617					0.09085753059810031
RSVKQLNL	8	Unmodified	_RSVKQLNL_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.8155212402344	2	479.295633	956.576714	0.10979	5.2623E-05	3.3831	0.0016215	3.4929	0.0016741	479.29710099406265	49.471	0.80908	49.32	48.972	49.781	-0.1512					64	21	4	0	0	0	0.027866	1	5085	5085		82.305	10.927	1	2344100	+		70347	27576	49335	49414	76618	76618					0.09668868917037798
RSVKRNTDV	9	Unmodified	_RSVKRNTDV_					0	0	0			REV__ENST00000399543.1_1_5:43042205-43042844:+|nuORF	REV__ENST00000399543.1_1_5:43042205-43042844:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.27685546875	2	537.804354	1073.59415	-1.5501	-0.00083367	3.8425	0.0020665	2.2924	0.0012329	537.8060271648458	44.759	0.99088	44.61	44.19	45.181	-0.1488					70	28	4	0	0	0	0.023837	1	4216	4216		45.972	19.279	1	2552900	+		70348	31834	49336	49415	76619	76619					0.06030164452022291
RSVKRNTDV	9	Unmodified	_RSVKRNTDV_					0	0	0			REV__ENST00000399543.1_1_5:43042205-43042844:+|nuORF	REV__ENST00000399543.1_1_5:43042205-43042844:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.275634765625	2	537.804354	1073.59415	-0.92828	-0.00049924	3.0839	0.0016585	2.1556	0.0011593	537.8057337090407	44.613	0.99986	44.65	44.273	45.272	0.036903					65	28	4	0	0	0	0.024344	1	4158	4158		45.972	8.8131	1	2313900	+		70349	31834	49336	49415	76620	76620					0.06030164452022291
RSVLLLPAGL	10	Unmodified	_RSVLLLPAGL_					0	0	0			REV__LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|8|1|sense	REV__LTR2752_dup21|chr2:81481148-81482372:-|1.3700832386545732|0.0780133736102343|4.13|461.0|8|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8363647460938	2	519.837134	1037.65972	-0.18488	-9.6106E-05	0.087954	4.5722E-05	-0.096923	-5.0384E-05	519.8374366616823	69.895	0.53731	69.895	69.629	70.166	0					18	15	2	0	0	0	0.87795	1	8454	8454		55.504	7.8469	1	5175700	+		70350	36339	49337	49416	76621	76621					0.1423918564505584
RSVLPLLTRLI	11	Unmodified	_RSVLPLLTRLI_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.2648010253906	3	427.618607	1279.83399	-0.48745	-0.00020844	2.5572	0.0010935	2.0698	0.00088507	427.61982978383105	54.142	0.12553	54.006	53.928	54.053	-0.13617					5	3	2	0	0	0	0.024816	1	5723	5723		16.53	7.3181	1	77952	+		70351	22113	49338	49417	76622	76622					0.2052676607036119
RSVLRDQAL	9	Unmodified	_RSVLRDQAL_					0	0	0		ENSG00000280267|ENST00000624207|PRAMEF26;ENSG00000229571|ENST00000619661|PRAMEF25	ENSG00000280267|ENST00000624207|PRAMEF26	ENSG00000280267|ENST00000624207|PRAMEF26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.3007202148438	2	529.309272	1056.60399	-0.88351	-0.00046765	0.2167	0.0001147	-0.66681	-0.00035295	529.3092062545727	30.119	0.57547	30.127	29.839	30.414	0.0086689					20	13	2	0	0	0	0.024495	1	1904	1904		34.173	0	1	137220			70352	10683	49339	49418	76623	76623					0.07795352457424087
RSVLTFSY	8	Unmodified	_RSVLTFSY_					0	0	0			REV__ENSG00000118322|ENST00000327245|ATP10B	REV__ENSG00000118322|ENST00000327245|ATP10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79150390625	2	486.761092	971.507631	-0.74894	-0.00036456	-4.109	-0.0020001	-4.8579	-0.0023647	486.7589522854419	31.491	0.55821	31.56	31.208	31.766	0.068962					22	13	2	0	0	0	0.027866	1	2078	2078		30.504	0	1	266530	+		70353	22399	49340	49419	76624	76624					0.020737848974818007
RSVLVLCW	8	Unmodified	_RSVLVLCW_					0	0	0			REV__ENST00000564774.5_1_16:84215181-84218621:-|nuORF	REV__ENST00000564774.5_1_16:84215181-84218621:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.77777099609375	2	488.275855	974.537157	-1.1288	-0.00055116	-2.3897	-0.0011668	-3.5185	-0.001718	488.2744989922453	24.913	1.2198	24.879	24.546	25.765	-0.034395					55	28	3	0	0	0	0.027866	1	1076	1076		31.955	0	1	259190	+		70354	35259	49341	49420	76625	76625					0.04887025641949094
RSVLYFTGE	9	Unmodified	_RSVLYFTGE_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;ENST00000547969.5_1_12:76443520-76446936:-|nuORF	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2931518554688	2	536.277106	1070.53966	-0.9332	-0.00050046	1.8686	0.0010021	0.93542	0.00050165	536.2766397752782	44.481	0.23705	44.518	44.375	44.612	0.0369					8	6	2	0	0	0	0.024405	1	4180	4180		35.618	0	1	164770			70355	9608	49342	49421	76626	76626					0.007211525806269492
RSVMPEGKLVE	11	Unmodified	_RSVMPEGKLVE_					0	0	0		nc|ENSG00000157703|Q8N434-2|SVOPL;ENSG00000157703|ENST00000674285|SVOPL	nc|ENSG00000157703|Q8N434-2|SVOPL	nc|ENSG00000157703|Q8N434-2|SVOPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.7095642089844	3	415.560429	1243.65946	-0.75395	-0.00031331	-0.60576	-0.00025173	-1.3597	-0.00056504	415.56018016124534	26.116	0.78877	25.953	25.834	26.622	-0.16331					32	22	2	0	0	0	0.024806	1	1271	1271		26.753	0	1	321710			70356	6617	49343	49422	76627	76627					0.0473739786286842
RSVNVLVH	8	Unmodified	_RSVNVLVH_					0	0	0		ENST00000404241.6_1_22:39918607-39918652:+|nuORF	ENST00000404241.6_1_22:39918607-39918652:+|nuORF	ENST00000404241.6_1_22:39918607-39918652:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7966613769531	2	462.274701	922.534849	0.53103	0.00024548	-0.54583	-0.00025232	-0.014803	-6.8432E-06	462.27429616828016	32.596	0.7234	32.659	32.352	33.076	0.062885					36	18	3	0	0	0	0.027866	1	2186	2186		25.45	1.2474	1	663100			70357	13702	49344	49423	76628	76628					0.070483132285176
RSVPPPIST	9	Unmodified	_RSVPPPIST_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.29229736328125	2	477.274367	952.53418	0.74648	0.00035628	-2.7422	-0.0013088	-1.9957	-0.00095249	477.27389404282	47.198	0.67269	47.045	46.698	47.371	-0.15301					37	17	3	0	0	0	0.024523	1	4645	4645		5.9211	0	1	267660			70358	8273	49345	49424	76629	76629					0.056014737887949195
RSVQKKEL	8	Unmodified	_RSVQKKEL_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1;ENST00000440294.6_1_3:38080716-38136583:+|nuORF;nc|ENSG00000008226|Q9Y238-2|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.77178955078125	2	494.300916	986.587279	-0.29603	-0.00014633	0.36296	0.00017941	0.066929	3.3083E-05	494.30124043420466	22.653	0.33081	22.578	22.363	22.694	-0.075296					10	6	2	0	0	0	0.027866	1	784	784		21.96	0	1	29874			70359	838	49346	49425	76630	76630					0.09344851571484014
RSVQTKAVN	9	Unmodified	_RSVQTKAVN_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.78839111328125	2	501.788173	1001.56179	-0.33296	-0.00016707	-0.26786	-0.00013441	-0.60081	-0.00030148	501.78802430151103	32.058	0.66306	32.12	31.839	32.502	0.062885					48	16	4	0	0	0	0.74711	1	2135	2135		42.864	2.0861	1	3243200			70360	3726	49347	49426	76631	76631					0.06107377049045226
RSVRQCQPT	9	Unmodified	_RSVRQCQPT_					0	0	0			REV__ENST00000391814.5_1_19:51220030-51220207:-|nuORF	REV__ENST00000391814.5_1_19:51220030-51220207:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7537841796875	2	537.777282	1073.54001	-0.92987	-0.00050006	-2.9319	-0.0015767	-3.8618	-0.0020768	537.7754519213097	25.905	0.44891	25.669	25.467	25.916	-0.23603					19	10	3	0	0	0	0.024374	1	1259	1259		40.778	0	1	186120	+		70361	31582	49348	49427	76632	76632					0.006182490288438203
RSVRQCQPT	9	Unmodified	_RSVRQCQPT_					0	0	0			REV__ENST00000391814.5_1_19:51220030-51220207:-|nuORF	REV__ENST00000391814.5_1_19:51220030-51220207:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7540283203125	2	537.777282	1073.54001	-1.3757	-0.00073984	-2.4268	-0.0013051	-3.8025	-0.0020449	537.775808039917	25.746	0.42507	25.575	25.364	25.79	-0.17151					20	9	3	0	0	0	0.024477	1	1198	1198		27.882	0	1	159270	+		70362	31582	49348	49427	76633	76633					0.006182490288438203
RSVSHADR	8	Unmodified	_RSVSHADR_					0	0	0		ENST00000341179.11_1_9:131015397-131017057:+|nuORF	ENST00000341179.11_1_9:131015397-131017057:+|nuORF	ENST00000341179.11_1_9:131015397-131017057:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	2	464.24139	926.468226	-0.32618	-0.00015143	1.6673	0.00077405	1.3412	0.00062262	464.24208233837703	51.361	0.40079	51.448	51.077	51.478	0.087006					12	10	2	0	0	0	0.027866	1	5374	5374		29.15	4.9468	1	92695			70363	12486	49349	49428	76634	76634					0.0020507766661239657
RSVSLLKGF	9	Unmodified	_RSVSLLKGF_					0	0	0		ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	ENSG00000183186|ENST00000332235|C2CD4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7790832519531	2	503.805834	1005.59712	-0.96087	-0.00048409	-3.2719	-0.0016484	-4.2327	-0.0021325	503.8057663297635	23.955	0.34544	23.908	23.699	24.044	-0.047148					10	7	2	0	0	0	0.024436	1	1001	1001		23.042	0	1	31406			70364	9206	49350	49429	76635	76635					0.09454039576860396
RSVSRPPLL	9	Unmodified	_RSVSRPPLL_					0	0	0			REV__ENST00000526508.5_1_11:46695513-46695603:+|nuORF	REV__ENST00000526508.5_1_11:46695513-46695603:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7686767578125	2	512.816733	1023.61891	-0.099561	-5.1056E-05	-2.01	-0.0010308	-2.1096	-0.0010818	512.8155055247315	39.116	0.60513	38.89	38.6	39.205	-0.2257					28	16	2	0	0	0	0.024487	1	3294	3294		24.203	1.1603	1	758000	+		70365	34447	49351	49430	76636	76636					0.10804844325434715
RSVSRQPLI	9	Unmodified	_RSVSRQPLI_					0	0	0			REV__ENST00000606522.1_1_6:10744189-10744252:-|nuORF	REV__ENST00000606522.1_1_6:10744189-10744252:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2918090820312	2	528.31964	1054.62473	0.047925	2.5319E-05	2.2794	0.0012042	2.3273	0.0012296	528.8236615721352	54.697	1.241	54.795	54.393	55.634	0.098015					97	34	5	0	0	0	0.024319	1	5902	5902		39.253	0	1	5435600	+		70366	35934	49352	49431	76637	76637					0.09959942837099334
RSVSVVKRG	9	Unmodified	_RSVSVVKRG_					0	0	0			REV__ENSG00000204590|ENST00000376621|GNL1	REV__ENSG00000204590|ENST00000376621|GNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.25042724609375	2	494.306532	986.598512	-1.0711	-0.00052943	2.0439	0.0010103	0.97282	0.00048087	494.3081233585473	68.595	0.77534	68.334	68.142	68.917	-0.26166					42	18	3	0	0	0	0.024447	1	7948	7948		25.574	4.6271	1	575540	+		70367	28622	49353	49432	76638	76638					0.10467673665630173
RSVTRPAFLY	10	Unmodified	_RSVTRPAFLY_					0	0	0		nc|nan|Q8N6N3-3|C1orf52;ENST00000294661.8_1_1:85724720-85725334:-|nuORF;nc|nan|Q8N6N3-2|C1orf52;ENSG00000162642|ENST00000471115|C1orf52	nc|nan|Q8N6N3-3|C1orf52	nc|nan|Q8N6N3-3|C1orf52	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.2012634277344	3	403.89614	1208.66659	0.76717	0.00030986	-4.2533	-0.0017179	-3.4861	-0.001408	403.8941444658998	21.03	1.1557	20.852	20.484	21.64	-0.17721					35	23	3	0	0	0	0.03519	1	581	581		20.03	0.7678	1	56852			70368	6971	49354	49433	76639	76639					0.07060498525629555
RSVVLGFRN	9	Unmodified	_RSVVLGFRN_					0	0	0			REV__ENSG00000174498|ENST00000327987|IGDCC3	REV__ENSG00000174498|ENST00000327987|IGDCC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.78466796875	2	524.306532	1046.59851	-0.5759	-0.00030195	0.9154	0.00047995	0.3395	0.000178	524.3076037915679	65.39	0.53419	65.149	64.923	65.457	-0.24145					21	12	3	0	0	0	0.024397	1	7447	7447		39.253	17.293	1	248050	+		70369	26869	49355	49434	76640	76640					0.07707673665618131
RSVVLKLI	8	Unmodified	_RSVVLKLI_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY;REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	2	464.32112	926.627687	-0.33211	-0.00015421	1.3497	0.0006267	1.0176	0.00047249	464.3228892000531	51.436	0.27084	51.523	51.339	51.61	0.087006					12	7	3	0	0	0	0.027866	1	5374	5374		29.15	2.3535	1	148360	+		70370	20514;20551	49356	49435	76641	76641					0.16143817961904006
RSVVLKVKVKY	11	Unmodified	_RSVVLKVKVKY_					0	0	0			REV__ENSG00000137486|ENST00000420843|ARRB1;REV__nc|ENSG00000137486|P49407-2|ARRB1	REV__ENSG00000137486|ENST00000420843|ARRB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.2480163574219	3	440.29049	1317.84964	-0.18942	-8.34E-05	4.2453	0.0018692	4.0558	0.0017858	440.62665510443355	58.127	1.3004	57.952	57.788	59.089	-0.1749					84	35	3	0	0	0	0.024816	1	6575	6575		16.53	0	1	724290	+		70371	23758;36701	49357	49436	76642	76642					0.20343052587418242
RSVVPAWVT	9	Unmodified	_RSVVPAWVT_					0	0	0		ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	ENSG00000136932|ENST00000375119|TRMO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7646179199219	2	507.790184	1013.56581	-0.42356	-0.00021508	-1.4778	-0.00075041	-1.9014	-0.00096549	507.7892150897086	39.126	0.42112	39.126	38.902	39.323	0					22	11	3	0	0	0	0.024319	1	3347	3347		39.253	10.103	1	195640			70372	5069	49358	49437	76643	76643					0.05957466542747625
RSVVPFLR	8	Unmodified	_RSVVPFLR_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7778625488281	2	487.300719	972.586885	0.10653	5.1913E-05	-0.40397	-0.00019686	-0.29744	-0.00014494	487.30038005440827	52.389	0.97676	52.205	51.741	52.718	-0.18405					55	24	3	0	0	0	0.027866	1	5437	5437		31.53	0	1	1604000	+		70373	19995	49359	49438	76644	76644					0.09949476642270838
RSWCLFRCNDD	11	Unmodified	_RSWCLFRCNDD_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2615661621094	3	472.204539	1413.59179	-0.039537	-1.867E-05	1.1941	0.00056387	1.1546	0.0005452	472.2050028239709	26.366	0.40572	26.343	26.164	26.569	-0.023088					14	9	2	0	0	0	0.024767	1	1322	1322		14.779	0	1	74583	+		70374	21986	49360	49439	76645	76645					-0.09846375339566293
RSWEQNWECL	10	Unmodified	_RSWEQNWECL_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000544007.5_1_14:31028384-31077115:+|nuORF;G2E3|p.S438Ifs*16|1|0.33|ENSG00000092140|chr14:30605805-30605806|-/ATCAATTCTAACCAGC|frameshift_variant	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7608947753906	3	450.868033	1349.58227	-0.29685	-0.00013384	-1.6371	-0.00073813	-1.934	-0.00087197	450.86597030594487	38.916	0.39199	38.817	38.591	38.983	-0.098755					18	10	3	0	0	0	0.03519	1	3253	3253		6.6596	5.7292	1	198940			70375	1981	49361	49440	76646	76646					-0.0785382035346629
RSWLTETF	8	Unmodified	_RSWLTETF_					0	0	0		ENST00000419218.5_1_3:49524758-49526166:+|nuORF	ENST00000419218.5_1_3:49524758-49526166:+|nuORF	ENST00000419218.5_1_3:49524758-49526166:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7429809570312	2	520.263999	1038.51345	-0.56866	-0.00029585	-2.4686	-0.0012843	-3.0373	-0.0015802	520.2627753455315	38.219	0.18823	37.997	37.866	38.054	-0.22149					7	5	2	0	0	0	0.027866	1	3113	3113		33.516	0.70317	1	118920			70376	13950	49362	49441	76647	76647					-0.0042711659086762666
RSWPSDII	8	Unmodified	_RSWPSDII_					0	0	0		ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	ENSG00000164318|ENST00000322350|EGFLAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.3089294433594	2	487.258717	972.50288	-0.50133	-0.00024428	3.7856	0.0018446	3.2842	0.0016003	487.2603763829145	20.875	0.29778	20.654	20.517	20.814	-0.22063					8	5	2	0	0	0	0.027866	1	561	561		85.359	16.875	1	12326			70377	7260	49363	49442	76648	76648					0.015529007547229412
RSWPYCCS	8	Unmodified	_RSWPYCCS_					0	0	0			REV__ENST00000316097.12_1_19:1924290-1924809:+|nuORF	REV__ENST00000316097.12_1_19:1924290-1924809:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2904357910156	2	501.20203	1000.38951	0.15582	7.8098E-05	2.1881	0.0010967	2.344	0.0011748	501.2030054488599	19.85	0.29456	19.689	19.529	19.823	-0.1608					7	5	2	0	0	0	0.027866	1	457	457		40.573	17.53	1	13095	+		70378	30277	49364	49443	76649	76649					-0.11067233954349831
RSWQNPLTNQE	11	Unmodified	_RSWQNPLTNQE_					0	0	0		ENST00000492897.3_1_17:46669706-46679621:+|nuORF;ENST00000474324.1_1_17:46673424-46679621:+|nuORF;ENST00000429755.8_1_17:46669689-46679621:+|nuORF;ENST00000481995.5_1_17:46673424-46679621:+|nuORF	ENST00000492897.3_1_17:46669706-46679621:+|nuORF	ENST00000492897.3_1_17:46669706-46679621:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.7508544921875	3	458.224985	1371.65313	-0.33455	-0.0001533	-0.24595	-0.0001127	-0.5805	-0.000266	458.22535206023883	30.088	0.42255	29.844	29.612	30.035	-0.24415					12	9	2	0	0	0	0.024742	1	1889	1889		45.908	9.5905	1	44017			70379	14156	49365	49444	76650	76650					-0.017834040442949117
RSWRERVD	8	Unmodified	_RSWRERVD_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.34765625	2	552.288871	1102.56319	-0.33865	-0.00018703	-0.54084	-0.0002987	-0.87948	-0.00048573	552.2884305945581	31.333	0.90288	31.092	30.875	31.778	-0.24109					33	22	3	0	0	0	0.027866	1	2150	2150		16.473	10.16	1	453390			70380	6560	49366	49445	76651	76651					0.01601011137813657
RSWRERVD	8	Unmodified	_RSWRERVD_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.288871	1102.56319	-0.3937	-0.00021744	-1.0736	-0.00059292	-1.4673	-0.00081035	552.2881046311413	31.24	0.53465	31.055	30.865	31.4	-0.18503	-0.040394	-0.00047057	NaN	49.442	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504340			70381	6560	49366	49445							0.01601011137813657
RSWRERVD	8	Unmodified	_RSWRERVD_					0	0	0		nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.288871	1102.56319	-0.41542	-0.00022943	-0.60846	-0.00033604	-1.0239	-0.00056548	552.2884446575376	31.292	0.68814	31.14	30.846	31.534	-0.15231	0.043907	4.3176E-05	NaN	49.442	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409230			70382	6560	49366	49445							0.01601011137813657
RSWSQEPA	8	Unmodified	_RSWSQEPA_					0	0	0		ENST00000215917.11_2_22:26884066-26884162:+|nuORF	ENST00000215917.11_2_22:26884066-26884162:+|nuORF	ENST00000215917.11_2_22:26884066-26884162:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75390625	2	480.730323	959.446094	-0.4381	-0.00021061	4.0738	0.0019584	3.6357	0.0017478	480.7322355934838	48.13	0.8946	48.197	47.87	48.764	0.066795					32	24	2	0	0	0	0.027866	1	4794	4794		45.952	0	1	133990			70383	11149	49367	49446	76652	76652					-0.035251468018145715
RSWTGLHVSSH	11	Unmodified	_RSWTGLHVSSH_					0	0	0			REV__ENST00000514033.1_1_4:38691527-38691614:+|nuORF	REV__ENST00000514033.1_1_4:38691527-38691614:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.250732421875	3	422.882782	1265.62652	0.30013	0.00012692	3.1782	0.001344	3.4784	0.0014709	422.884046348014	53.378	0.70858	53.119	52.803	53.512	-0.25838					51	18	5	0	0	0	0.024746	1	5611	5611		21.032	0	1	588050	+		70384	34163	49368	49447	76653	76653					0.004329518550321154
RSYLSFSKL	9	Unmodified	_RSYLSFSKL_					0	0	0			REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31	REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.773681640625	2	550.808574	1099.60259	-1.3713	-0.00075532	-0.02549	-1.404E-05	-1.3968	-0.00076936	550.8083228566995	55.247	0.29887	55.345	55.148	55.447	0.098015					13	7	2	0	0	0	0.020356	1	6006	6006		93.143	24.356	1	155130	+		70385	21374	49369	49448	76654	76654					0.05677718368656315
RSYQGVVQF	9	Unmodified	_RSYQGVVQF_					0	0	0		VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant;ENSG00000162738|ENST00000368061|VANGL2	VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.2824096679688	2	542.282723	1082.55089	-0.85072	-0.00046133	0.5736	0.00031106	-0.27711	-0.00015027	542.2829616630574	52.112	1.0755	51.994	51.646	52.721	-0.11875					70	27	4	0	0	0	0.15388	2	5405	5393;5405		98.582	19.131	1	5246800			70386	6984	49370	49449	76655;76656	76656					0.012919746747684258
RSYQGVVQF	9	Unmodified	_RSYQGVVQF_					0	0	0		VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant;ENSG00000162738|ENST00000368061|VANGL2	VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.2823486328125	2	542.282723	1082.55089	-1.546	-0.00083836	1.311	0.00071093	-0.235	-0.00012744	542.2833367006621	52.394	1.1517	52.125	51.76	52.912	-0.26903					71	29	4	0	0	0	0.17845	4	5435	5412;5423;5435;5447		93.143	17.465	1	4847000			70387	6984	49370	49449	76657;76658;76659;76660	76659					0.012919746747684258
RSYQGVVQF	9	Unmodified	_RSYQGVVQF_					0	0	0		VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant;ENSG00000162738|ENST00000368061|VANGL2	VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.2810668945312	2	542.282723	1082.55089	-0.79107	-0.00042899	0.49169	0.00026664	-0.29938	-0.00016235	542.2829168601154	52.206	1.2024	52.022	51.634	52.836	-0.18405					66	28	4	0	0	0	0.33603	1	5394	5394		70.816	12.034	1	5207400			70388	6984	49370	49449	76661	76661					0.012919746747684258
RSYQHIMKW	9	Unmodified	_RSYQHIMKW_					0	0	0		nc|ENSG00000139998|P59190-2|RAB15;ENSG00000139998|ENST00000533601|RAB15	nc|ENSG00000139998|P59190-2|RAB15	nc|ENSG00000139998|P59190-2|RAB15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.23907470703125	3	416.881725	1247.62335	0.089671	3.7382E-05	1.5236	0.00063518	1.6133	0.00067256	416.88260106513565	42.169	0.30589	41.939	41.725	42.031	-0.2303					12	8	2	0	0	0	0.024389	1	3730	3730		16.007	0	1	77579			70389	18330	49371	49450	76662	76662					0.009439854766696953
RSYQMMVA	8	Unmodified	_RSYQMMVA_					0	0	0			REV__nc|ENSG00000007944|Q8WY64-2|MYLIP	REV__nc|ENSG00000007944|Q8WY64-2|MYLIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.79901123046875	2	493.23333	984.452107	0.36248	0.00017879	-3.4876	-0.0017202	-3.1251	-0.0015414	493.2314865248832	52.842	0.51398	52.584	52.249	52.763	-0.25838					19	12	2	0	0	0	0.027866	1	5509	5509		19.997	0	1	290020	+		70390	19871	49372	49451	76663	76663					-0.040740878861470264
RSYRRYKRQHR	11	Unmodified	_RSYRRYKRQHR_					0	0	0			REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.54412841796875	4	402.229091	1604.88726	-0.31676	-0.00012741	0.23079	9.283E-05	-0.08597	-3.458E-05	402.22932571266654	25.517	0.67345	25.345	24.95	25.623	-0.17151					24	15	2	0	0	0	0.02489	1	1134	1134		0.28643	0	1	114970	+		70391	22363	49373	49452	76664	76664					0.10900956625573599
RSYRRYKRQHR	11	Unmodified	_RSYRRYKRQHR_					0	0	0			REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		4	402.229091	1604.88726	0.81976	0.00032973	-1.4857	-0.00059757	-0.6659	-0.00026784	402.2286674842499	25.5	0.58778	25.329	24.912	25.499	-0.17078	-0.0079397	-0.0013	NaN	0.28643	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87492	+		70392	22363	49373	49452							0.10900956625573599
RSYSESEKQW	10	Unmodified	_RSYSESEKQW_					0	0	0		nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.8701477050781	3	433.87032	1298.58913	0.073904	3.2065E-05	-0.00074318	-3.2245E-07	0.07316	3.1742E-05	433.8702249658628	31.317	1.0208	31.164	30.846	31.867	-0.15231					43	25	2	0	0	0	0.35849	1	2047	2047		102.95	39.261	1	1407500			70393	10744	49374	49453	76665	76665					-0.048221842012253546
RSYYEDKNI	9	Unmodified	_RSYYEDKNI_					0	0	0			REV__CST5|p.L102Wfs*12|1|0.14|ENSG00000170367|chr20:23877545-23877545|A/-|frameshift_variant	REV__CST5|p.L102Wfs*12|1|0.14|ENSG00000170367|chr20:23877545-23877545|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	594.2642822265625	2	594.288202	1186.56185	-0.76539	-0.00045487	-1.1148	-0.00066252	-1.8802	-0.0011174	594.287672674727	46.969	0.24534	46.775	46.678	46.923	-0.19387					8	6	2	0	0	0	0.024539	1	4552	4552		9.7057	0	1	149710	+		70394	19622	49375	49454	76666	76666					-0.023966677416183302
RSYYRNSV	8	Unmodified	_RSYYRNSV_					0	0	0		ENSG00000179331|ENST00000320578|RAB39A	ENSG00000179331|ENST00000320578|RAB39A	ENSG00000179331|ENST00000320578|RAB39A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7680053710938	2	522.764697	1043.51484	-0.29316	-0.00015325	-3.2911	-0.0017205	-3.5842	-0.0018737	522.7627550248162	55.862	0.52893	55.862	55.645	56.174	0					32	14	3	0	0	0	0.027866	1	6170	6170		33.516	18.651	1	1927600			70395	8892	49376	49455	76667	76667					-0.005174825021185825
RSYYRNSV	8	Unmodified	_RSYYRNSV_					0	0	0		ENSG00000179331|ENST00000320578|RAB39A	ENSG00000179331|ENST00000320578|RAB39A	ENSG00000179331|ENST00000320578|RAB39A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.768310546875	2	522.764697	1043.51484	-0.31013	-0.00016212	-2.9226	-0.0015278	-3.2327	-0.0016899	522.7628535083667	55.898	0.69261	55.742	55.591	56.284	-0.15602					51	18	4	0	0	0	0.027866	1	6153	6153		33.516	6.8227	1	1971700			70396	8892	49376	49455	76668	76668					-0.005174825021185825
RTAAHRPAGA	10	Unmodified	_RTAAHRPAGA_					0	0	0		ENST00000577161.5_1_17:78811748-78857220:+|nuORF	ENST00000577161.5_1_17:78811748-78857220:+|nuORF	ENST00000577161.5_1_17:78811748-78857220:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7453308105469	2	504.278306	1006.54206	-0.32308	-0.00016292	2.5858	0.0013039	2.2627	0.001141	504.2791473761764	34.591	0.40501	34.384	34.12	34.525	-0.20696					10	9	2	0	0	0	0.03519	1	2572	2572		30.318	0	1	65641			70397	17113	49377	49456	76669	76669					0.03905045828935272
RTAAHRPAGA	10	Unmodified	_RTAAHRPAGA_					0	0	0		ENST00000577161.5_1_17:78811748-78857220:+|nuORF	ENST00000577161.5_1_17:78811748-78857220:+|nuORF	ENST00000577161.5_1_17:78811748-78857220:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.278306	1006.54206	0.017665	8.908E-06	4.1023	0.0020687	4.12	0.0020776	504.27921079106676	34.427	0.34597	34.203	34.033	34.379	-0.22412	-0.079004	0.0013206	NaN	23.523	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69739			70398	17113	49377	49456							0.03905045828935272
RTAAHRPAGA	10	Unmodified	_RTAAHRPAGA_					0	0	0		ENST00000577161.5_1_17:78811748-78857220:+|nuORF	ENST00000577161.5_1_17:78811748-78857220:+|nuORF	ENST00000577161.5_1_17:78811748-78857220:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.278306	1006.54206	-0.94321	-0.00047564	2.5934	0.0013078	1.6502	0.00083215	504.2796556326774	34.435	0.40237	34.259	34.05	34.452	-0.17557	-0.022724	-0.00020128	NaN	23.523	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81501			70399	17113	49377	49456							0.03905045828935272
RTADPKNAW	9	Unmodified	_RTADPKNAW_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7725219726562	2	529.772522	1057.53049	-1.5472	-0.00081967	1.1487	0.00060857	-0.39848	-0.0002111	529.7731512293155	28.771	1.0458	28.525	27.921	28.967	-0.24524					69	24	4	0	0	0	0.26966	2	1717	1704;1717		79.713	10.721	1	1019100			70400	10075	49378	49457	76670;76671	76671					0.0040280401492509554
RTADPKNAW	9	Unmodified	_RTADPKNAW_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7723388671875	2	529.772522	1057.53049	-0.94048	-0.00049824	0.60482	0.00032042	-0.33566	-0.00017782	529.7728441129415	28.621	1.0544	28.452	27.886	28.941	-0.16897					72	24	4	0	0	0	0.34489	1	1699	1699		69.628	7.5202	1	890200			70401	10075	49378	49457	76672	76672					0.0040280401492509554
RTADPKNAW	9	Unmodified	_RTADPKNAW_					0	0	0		nc|ENSG00000197971|P02686-2|MBP;ENSG00000197971|ENST00000355994|MBP	nc|ENSG00000197971|P02686-2|MBP	nc|ENSG00000197971|P02686-2|MBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7722778320312	2	529.772522	1057.53049	-0.50684	-0.00026851	0.11164	5.9142E-05	-0.39521	-0.00020937	529.7725087807565	28.591	1.0364	28.439	27.961	28.997	-0.15195					62	24	4	0	0	0	0.077175	2	1674	1663;1674		118.74	20.114	1	1246200			70402	10075	49378	49457	76673;76674	76674					0.0040280401492509554
RTAKKLGEY	9	Unmodified	_RTAKKLGEY_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2882690429688	2	533.306198	1064.59784	0.60507	0.00032269	-0.93551	-0.00049891	-0.33044	-0.00017622	533.3056985251372	25.191	0.55363	25.02	24.688	25.241	-0.17151					17	11	2	0	0	0	0.024466	1	1161	1161		18.262	0	1	116130	+		70403	23011	49379	49458	76675	76675					0.06812834225911502
RTAKKLGEY	9	Unmodified	_RTAKKLGEY_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.306198	1064.59784	-0.75395	-0.00040208	-0.29671	-0.00015824	-1.0507	-0.00056032	533.3056187921803	25.404	0.59693	25.177	24.797	25.394	-0.22683	0.12785	0.0031135	NaN	12.812	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137340	+		70404	23011	49379	49458							0.06812834225911502
RTAKSKIED	9	Unmodified	_RTAKSKIED_					0	0	0		ENSG00000157601|ENST00000398598|MX1;MX1|p.R510T|1|0.19|ENSG00000157601|chr21:41452640-41452640|G/C|missense_variant	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3025512695312	2	524.293288	1046.57202	0.17471	9.1601E-05	2.9142	0.0015279	3.089	0.0016195	524.2948094196975	86.82	0.25713	86.683	86.53	86.787	-0.13734					8	5	2	0	0	0	0.024418	1	10548	10548		45.972	5.1941	1	193530			70405	6611	49380	49459	76676	76676					0.05059939983630102
RTALEEHW	8	Unmodified	_RTALEEHW_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.2589111328125	2	521.259248	1040.50394	0.45272	0.00023598	-1.2352	-0.00064388	-0.78252	-0.0004079	521.2585387983826	85.172	1.38	85.172	84.834	86.214	0					87	32	5	0	0	0	0.47665	3	10695	10670;10682;10695		87.754	25.439	1	8088000			70406	18639	49381	49460	76677;76678;76679	76679					-0.014688848763853457
RTALEEHW	8	Unmodified	_RTALEEHW_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.258544921875	2	521.259248	1040.50394	-0.58315	-0.00030397	-0.24311	-0.00012672	-0.82626	-0.0004307	521.2590861449648	85.142	1.541	85.084	84.523	86.064	-0.05761					103	36	6	0	0	0	0.53523	4	10635	10625;10635;10647;10660		82.305	18.999	1	7904900			70407	18639	49381	49460	76680;76681;76682;76683	76681					-0.014688848763853457
RTALEEHW	8	Unmodified	_RTALEEHW_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.2589111328125	2	521.259248	1040.50394	-0.74659	-0.00038917	-0.058827	-3.0664E-05	-0.80542	-0.00041983	521.2591701286534	85.113	1.4999	85.139	84.704	86.204	0.025536					85	35	3	0	0	0	0.53523	4	10589	10577;10589;10601;10614		82.305	16.519	1	8516100			70408	18639	49381	49460	76684;76685;76686;76687	76685					-0.014688848763853457
RTALEEHW	8	Unmodified	_RTALEEHW_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.259248	1040.50394	0.1637	8.5332E-05	-0.54942	-0.00028639	-0.38572	-0.00020106	521.258789202954	85.117	0.8732	84.917	84.38	85.253	-0.20025	-0.11037	7.6416E-06	NaN	87.754	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300840			70409	18639	49381	49460							-0.014688848763853457
RTALEEHW	8	Unmodified	_RTALEEHW_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.259248	1040.50394	1.0443	0.00054436	-1.3745	-0.00071649	-0.33021	-0.00017212	521.2583116564018	85.075	0.99457	84.925	84.665	85.66	-0.15	-0.10222	-0.00085255	NaN	87.754	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259760			70410	18639	49381	49460							-0.014688848763853457
RTALEEHW	8	Unmodified	_RTALEEHW_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.259248	1040.50394	0.63507	0.00033104	-1.2143	-0.00063294	-0.57919	-0.00030191	521.2585322459918	85.065	1.0417	84.927	84.577	85.618	-0.13753	-0.10021	-0.00068547	NaN	87.754	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281340			70411	18639	49381	49460							-0.014688848763853457
RTALLQVT	8	Unmodified	_RTALLQVT_					0	0	0		nc|ENSG00000154654|O15394-2|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2873840332031	2	451.276909	900.539266	-0.054702	-2.4686E-05	-3.643	-0.001644	-3.6977	-0.0016687	451.27492921848614	52.992	0.99374	52.992	52.273	53.267	0					37	25	2	0	0	0	0.027866	1	5643	5643		23.042	3.6825	1	640610			70412	18395	49382	49461	76688	76688					0.08501777651417797
RTALLQVT	8	Unmodified	_RTALLQVT_					0	0	0		nc|ENSG00000154654|O15394-2|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.276909	900.539266	-0.18945	-8.5495E-05	-1.3612	-0.00061428	-1.5507	-0.00069977	451.2764712016624	53.142	0.48313	52.995	52.72	53.203	-0.14723	0.016698	-0.00014444	NaN	16.473	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423190			70413	18395	49382	49461							0.08501777651417797
RTALLQVT	8	Unmodified	_RTALLQVT_					0	0	0		nc|ENSG00000154654|O15394-2|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	nc|ENSG00000154654|O15394-2|NCAM2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	451.276909	900.539266	0.10834	4.8891E-05	-0.56442	-0.00025471	-0.45608	-0.00020582	451.27648316582884	52.853	0.44217	52.947	52.752	53.194	0.09433	-0.031069	0.0005747	NaN	16.473	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	599310			70414	18395	49382	49461							0.08501777651417797
RTALPRIF	8	Unmodified	_RTALPRIF_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7772521972656	2	487.300719	972.586885	-0.81892	-0.00039906	0.548	0.00026704	-0.27092	-0.00013202	487.3008761895141	52.523	0.86765	52.254	51.725	52.593	-0.26903					55	22	3	0	0	0	0.027866	1	5459	5459		53.351	29.149	1	1749600			70415	7818	49383	49462	76689	76689					0.09949476642270838
RTALTLNL	8	Unmodified	_RTALTLNL_					0	0	0		ENST00000438447.1_1_5:31983346-31983580:+|nuORF	ENST00000438447.1_1_5:31983346-31983580:+|nuORF	ENST00000438447.1_1_5:31983346-31983580:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.76861572265625	2	451.276909	900.539266	-0.20286	-9.1545E-05	0.1552	7.0036E-05	-0.047661	-2.1508E-05	451.2768865084108	27.619	0.21458	27.462	27.391	27.605	-0.15664					6	4	2	0	0	0	0.027866	1	1509	1509		44.117	8.4985	1	89389			70416	14313	49384	49463	76690	76690					0.08501777651417797
RTAMAENI	8	Unmodified	_RTAMAENI_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	453.2579040527344	2	453.229102	904.443651	-0.48075	-0.00021789	0.095141	4.3121E-05	-0.3856	-0.00017477	453.22903348050136	45.139	0.24578	45.039	44.942	45.188	-0.099449					9	6	2	0	0	0	0.027866	1	4250	4250		25.45	0	1	88718	+		70417	22317	49385	49464	76691	76691					-0.012393185311225352
RTAMAENI	8	Unmodified	_RTAMAENI_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.229102	904.443651	-0.055788	-2.5285E-05	5.3721	0.0024348	5.3163	0.0024095	453.2326999905987	44.777	0.72994	44.814	44.542	45.272	0.0369	-0.25221	0.0036299	NaN	47.916	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326230	+		70418	22317	49385	49464							-0.012393185311225352
RTAMAENI	8	Unmodified	_RTAMAENI_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	453.229102	904.443651	-0.08944	-4.0537E-05	-2.8405	-0.0012874	-2.9299	-0.0013279	453.2282466316743	45.406	0.30631	45.153	45.019	45.325	-0.25252	0.087045	-0.0038144	NaN	47.916	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117500	+		70419	22317	49385	49464							-0.012393185311225352
RTAMAENI	8	Unmodified	_RTAMAENI_					0	0	0			REV__ENSG00000116991|ENST00000674635|SIPA1L2	REV__ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	453.229102	904.443651	-0.43166	-0.00019564	-0.20612	-9.3417E-05	-0.63777	-0.00028906	453.22886188665626	45.469	0.43229	45.258	44.95	45.382	-0.21109	0.19177	-0.0014265	NaN	47.916	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188540	+		70420	22317	49385	49464							-0.012393185311225352
RTAMGLRSW	9	Unmodified	_RTAMGLRSW_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2842407226562	2	539.284743	1076.55493	-0.43342	-0.00023374	0.1585	8.5478E-05	-0.27491	-0.00014826	539.2846955044738	41.746	0.61416	41.623	41.346	41.961	-0.12299					39	16	3	0	0	0	0.48817	1	3722	3722		60.118	1.3363	1	2409600			70421	9401	49386	49465	76692	76692					0.01971740896829033
RTAMGLRSW	9	Unmodified	_RTAMGLRSW_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2838745117188	2	539.284743	1076.55493	-0.72681	-0.00039196	0.51857	0.00027966	-0.20824	-0.0001123	539.2848457688481	41.946	0.72635	41.714	41.391	42.117	-0.23186					55	19	4	0	0	0	0.6238	1	3725	3725		51.193	10.415	1	2544000			70422	9401	49386	49465	76693	76693					0.01971740896829033
RTAMGLRSW	9	Unmodified	_RTAMGLRSW_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.28369140625	2	539.284743	1076.55493	-0.97217	-0.00052427	0.66002	0.00035594	-0.31214	-0.00016833	539.2848907772909	41.995	0.74397	41.765	41.472	42.216	-0.23029					57	20	4	0	0	0	0.18994	2	3738	3726;3738		90.601	31.819	1	2381300			70423	9401	49386	49465	76694;76695	76695					0.01971740896829033
RTAPREAAGP	10	Unmodified	_RTAPREAAGP_					0	0	0			REV__ENST00000519948.3_1_12:74931642-74931807:+|nuORF	REV__ENST00000519948.3_1_12:74931642-74931807:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8002319335938	2	513.277972	1024.54139	-0.31298	-0.00016065	-4.0641	-0.002086	-4.3771	-0.0022467	513.2762150601363	31.454	0.58235	31.465	31.041	31.624	0.011797					21	13	3	0	0	0	0.03519	1	2092	2092		44.377	13.874	1	214290	+		70424	34279	49387	49466	76696	76696					0.030102063892172737
RTAQEVETY	9	Unmodified	_RTAQEVETY_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.7671508789062	2	548.767103	1095.51965	-0.093646	-5.139E-05	-0.27063	-0.00014851	-0.36428	-0.0001999	548.766966307444	31.998	1.1304	31.761	31.45	32.581	-0.23667					76	26	5	0	0	0	0.015752	5	2164	2155;2164;2176;2189;2203		158.07	70.649	1	7784100			70425	2921	49388	49467	76697;76698;76699;76700;76701	76698					-0.02428643149983145
RTAQEVETY	9	Unmodified	_RTAQEVETY_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.7669067382812	2	548.767103	1095.51965	0.02452	1.3456E-05	-0.40691	-0.0002233	-0.38239	-0.00020984	548.7668797687417	31.943	1.2249	31.757	31.439	32.664	-0.18525					83	28	5	0	0	0	0.013946	5	2157	2147;2157;2169;2182;2195		181.41	99.102	1	7193500			70426	2921	49388	49467	76702;76703;76704;76705;76706	76703					-0.02428643149983145
RTAQEVETY	9	Unmodified	_RTAQEVETY_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.7671508789062	2	548.767103	1095.51965	-0.61049	-0.00033502	0.13497	7.4068E-05	-0.47552	-0.00026095	548.7671993191342	31.915	1.0325	31.758	31.451	32.484	-0.15772					77	24	5	0	0	0	0.013337	4	2139	2129;2139;2151;2163		176.44	73.671	1	7366700			70427	2921	49388	49467	76707;76708;76709;76710	76708					-0.02428643149983145
RTAQLLEDL	9	Unmodified	_RTAQLLEDL_					0	0	0			REV__ENSG00000163661|ENST00000295927|PTX3	REV__ENSG00000163661|ENST00000295927|PTX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.8187255859375	2	529.795663	1057.57677	-0.33974	-0.00018	3.8451	0.0020371	3.5053	0.0018571	529.7977667405373	70.35	0.3281	70.079	69.827	70.155	-0.27185					10	7	2	0	0	0	0.024495	1	8174	8174		26.693	0	1	106580	+		70428	25614	49389	49468	76711	76711					0.05028824126384279
RTARATQKVF	10	Unmodified	_RTARATQKVF_					0	0	0		ENST00000406386.7_1_22:38170154-38170496:+|nuORF	ENST00000406386.7_1_22:38170154-38170496:+|nuORF	ENST00000406386.7_1_22:38170154-38170496:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3427124023438	2	589.343646	1176.67274	-2.3876	-0.0014071	1.117	0.00065827	-1.2707	-0.00074887	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.1088	1	11487	11487		31.53	5.4664	1	4758600			70429	13731	49390	49469	76712	76712					0.09147016757128767
RTARATQKVF	10	Unmodified	_RTARATQKVF_					0	0	0		ENST00000406386.7_1_22:38170154-38170496:+|nuORF	ENST00000406386.7_1_22:38170154-38170496:+|nuORF	ENST00000406386.7_1_22:38170154-38170496:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3427734375	2	589.343646	1176.67274	-1.6034	-0.00094497	0.25779	0.00015193	-1.3456	-0.00079304	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.1307	1	11151	11151		26.693	1.2427	1	5827400			70430	13731	49390	49469	76713	76713					0.09147016757128767
RTARTKKP	8	Unmodified	_RTARTKKP_					0	0	0			REV__ENST00000450819.1_1_1:237144684-237145005:+|nuORF	REV__ENST00000450819.1_1_1:237144684-237145005:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.73541259765625	2	479.30125	956.587947	0.21213	0.00010167	2.7541	0.00132	2.9662	0.0014217	479.3025203924152	59.355	0.84608	59.44	59.134	59.98	0.085686					48	22	3	0	0	0	0.027866	1	6717	6717		37.159	0	1	1932600	+		70431	32711	49391	49470	76714	76714					0.10791691011183957
RTASPLGPL	9	Unmodified	_RTASPLGPL_					0	0	0			REV__nc|ENSG00000159140|P18583-6|SON	REV__nc|ENSG00000159140|P18583-6|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.26983642578125	2	456.269084	910.523616	-0.15782	-7.2007E-05	0.1565	7.1407E-05	-0.0013157	-6.0033E-07	456.2690338635349	27.847	1.1593	27.603	27.333	28.492	-0.24438					58	27	4	0	0	0	0.31247	1	1559	1559		73.975	0	1	2720200	+		70432	25235	49392	49471	76715	76715					0.06477491134376123
RTASPLGPL	9	Unmodified	_RTASPLGPL_					0	0	0			REV__nc|ENSG00000159140|P18583-6|SON	REV__nc|ENSG00000159140|P18583-6|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2704162597656	2	456.269084	910.523616	-0.82896	-0.00037823	0.90766	0.00041414	0.078702	3.5909E-05	456.26934404313107	27.676	0.93804	27.508	27.317	28.255	-0.16816					58	22	5	0	0	0	0.43973	1	1530	1530		63.306	0	1	2920900	+		70433	25235	49392	49471	76716	76716					0.06477491134376123
RTATFQQRF	9	Unmodified	_RTATFQQRF_					0	0	0		ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3;POLDIP3|p.T45I|1|0.07|ENSG00000100227|chr22:42603086-42603086|G/A|missense_variant	ENSG00000100227|ENST00000252115|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.80712890625	2	577.806897	1153.59924	-0.17302	-9.9971E-05	-0.40633	-0.00023478	-0.57935	-0.00033475	577.8067272719235	35.258	0.74518	35.043	34.712	35.457	-0.21556					60	18	4	0	0	0	0.26966	1	2652	2652		79.713	22.992	1	3906400			70434	2155	49393	49472	76717	76717					0.0285846831463914
RTATFQQRF	9	Unmodified	_RTATFQQRF_					0	0	0		ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3;POLDIP3|p.T45I|1|0.07|ENSG00000100227|chr22:42603086-42603086|G/A|missense_variant	ENSG00000100227|ENST00000252115|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.8065795898438	2	577.806897	1153.59924	-0.90574	-0.00052334	0.47276	0.00027316	-0.43298	-0.00025018	577.8071633867411	35.169	0.94731	34.957	34.601	35.548	-0.21246					70	23	5	0	0	0	0.086035	2	2645	2633;2645		115.49	44.678	1	3562100			70435	2155	49393	49472	76718;76719	76719					0.0285846831463914
RTATFQQRF	9	Unmodified	_RTATFQQRF_					0	0	0		ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3;POLDIP3|p.T45I|1|0.07|ENSG00000100227|chr22:42603086-42603086|G/A|missense_variant	ENSG00000100227|ENST00000252115|POLDIP3	ENSG00000100227|ENST00000252115|POLDIP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.8068237304688	2	577.806897	1153.59924	-0.82346	-0.0004758	0.25426	0.00014691	-0.5692	-0.00032889	577.8070562305587	35.118	0.81078	34.931	34.641	35.452	-0.18675					61	20	5	0	0	0	0.22902	1	2616	2616		85.161	30.385	1	4332700			70436	2155	49393	49472	76720	76720					0.0285846831463914
RTATILKETT	10	Unmodified	_RTATILKETT_					0	0	0		ENSG00000162641|ENST00000370001|AKNAD1;ENST00000477908.1_1_1:109358795-109359618:-|nuORF;ENST00000466413.1_1_1:109358795-109359852:-|nuORF	ENSG00000162641|ENST00000370001|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.330078125	2	567.32987	1132.64519	-0.43786	-0.00024841	0.29472	0.0001672	-0.14315	-8.1212E-05	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.1162	1	11094	11094		19.104	1.7386	1	4134200			70437	6970	49394	49473	76721	76721					0.08417068706239661
RTCCTACEP	9	Unmodified	_RTCCTACEP_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2434997558594	2	492.190805	982.367057	0.37571	0.00018492	-2.6172	-0.0012882	-2.2415	-0.0011033	492.1894710294474	37.504	0.36325	37.504	37.269	37.632	0					11	9	2	0	0	0	0.024466	1	3080	3080		47.657	14.142	1	63269			70438	9037	49395	49474	76722	76722					-0.1248320141428394
RTDAILLGHY	10	Unmodified	_RTDAILLGHY_					0	0	0		ENST00000474457.1_1_6:52958219-52962625:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9	ENST00000474457.1_1_6:52958219-52962625:+|nuORF	ENST00000474457.1_1_6:52958219-52962625:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	580.8060302734375	2	579.81693	1157.61931	0.027273	1.5813E-05	0.085486	4.9566E-05	0.11276	6.5379E-05	579.8168706075077	49.649	0.63481	49.544	49.259	49.894	-0.10558					28	16	2	0	0	0	0.03519	1	4998	4998		33.922	16.557	1	971930			70439	3176	49396	49475	76723	76723					0.046802192546238075
RTDDGAGPSP	10	Unmodified	_RTDDGAGPSP_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.8056945800781	2	486.722695	971.430838	-0.24076	-0.00011718	1.9661	0.00095693	1.7253	0.00083974	486.72356626193	35.042	0.30106	34.855	34.76	35.061	-0.18675					9	7	2	0	0	0	0.03519	1	2599	2599		71.877	27.761	1	92863	+		70440	21747	49397	49476	76724	76724					-0.056020583896497556
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.2904052734375	2	549.290548	1096.56654	-0.23301	-0.00012799	-0.53598	-0.00029441	-0.76899	-0.0004224	549.2901116934629	45.812	0.76061	45.551	45.284	46.044	-0.26118					50	20	3	0	0	0	0.247	1	4369	4369		82.75	10.873	1	2357700			70441	3360	49398	49477	76725	76725					0.022122611917893664
RTDGKVFQF	9	Unmodified	_RTDGKVFQF_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.291259765625	2	549.290548	1096.56654	-0.92377	-0.00050742	0.12854	7.0606E-05	-0.79523	-0.00043681	549.2905229355786	45.736	0.63708	45.534	45.293	45.93	-0.20226					41	17	3	0	0	0	0.28753	1	4357	4357		77.318	11.514	1	2631000			70442	3360	49398	49477	76726	76726					0.022122611917893664
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.7880249023438	2	562.78837	1123.56219	-0.77641	-0.00043696	0.77213	0.00043455	-0.0042846	-2.4113E-06	562.7884744705941	30.175	0.88519	29.997	29.655	30.54	-0.17817					54	20	5	0	0	0	0.17845	1	1903	1903		93.143	33.025	1	844650			70443	9952	49399	49478	76727	76727					0.005347519782390009
RTDIARTEY	9	Unmodified	_RTDIARTEY_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	562.78837	1123.56219	-0.27786	-0.00015637	-0.09194	-5.1743E-05	-0.3698	-0.00020812	562.7881007947044	30.201	0.67969	30.051	29.75	30.429	-0.14952	0.021188	-0.00030067	NaN	93.143	46	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	798220			70444	9952	49399	49478							0.005347519782390009
RTDKRYTVH	9	Unmodified	_RTDKRYTVH_					0	0	0			REV__ENSG00000113249|ENST00000523175|HAVCR1	REV__ENSG00000113249|ENST00000523175|HAVCR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	588.3173828125	2	588.317628	1174.6207	-1.528	-0.00089893	0.34711	0.00020421	-1.1809	-0.00069472	588.3181271848159	28.779	0.96182	28.777	28.459	29.421	-0.0027485					88	23	5	0	0	0	0.77768	1	1693	1693		40.778	1.5253	1	2910900	+		70445	22051	49400	49479	76728	76728					0.04037853343356801
RTDLHAFENL	10	Unmodified	_RTDLHAFENL_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.9066162109375	3	405.875405	1214.60439	1.1635	0.00047224	-3.3948	-0.0013779	-2.2313	-0.00090562	405.87367596437787	23.139	0.55744	23.215	22.793	23.351	0.076241					15	12	2	0	0	0	0.03519	1	781	781		17.167	8.7595	1	44664			70446	5898	49401	49480	76729	76729					0.005667273866038158
RTDLHAFENL	10	Unmodified	_RTDLHAFENL_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	405.875405	1214.60439	0.70016	0.00028418	-3.076	-0.0012485	-2.3759	-0.00096431	405.8739668824757	23.34	0.31638	23.34	23.165	23.482	0	0.056174	1.4713E-05	NaN	17.167	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58954			70447	5898	49401	49480							0.005667273866038158
RTDLHAFENL	10	Unmodified	_RTDLHAFENL_					0	0	0		ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	405.875405	1214.60439	0.0012611	5.1187E-07	-2.9882	-0.0012128	-2.9869	-0.0012123	405.87413041270145	23.357	0.40107	23.296	23.069	23.47	-0.060862	0.01271	0.00012172	NaN	17.167	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50457			70448	5898	49401	49480							0.005667273866038158
RTDLTPILL	9	Unmodified	_RTDLTPILL_					0	0	0		LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|21|3|sense	MSMS	OPSCC_39_ClassI_Rep-1	1	521.3186645507812	2	521.318774	1040.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.909	1	64.909	64.409	65.409	0								0	0	0	0.052088	1	7663	7663		108.09	8.7125	1				70449	17941	49402	49481	76730	76730					0.10430889028475576
RTDVAVLRY	9	Unmodified	_RTDVAVLRY_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.8115234375	2	546.811648	1091.60874	-0.3945	-0.00021572	0.19938	0.00010902	-0.19512	-0.00010669	546.8115561172739	43.312	0.75969	43.2	42.854	43.614	-0.11253					59	20	4	0	0	0	0.15388	2	3967	3967;3980		98.582	32.153	1	3557600			70450	7496	49403	49482	76731;76732	76731					0.06660236600191638
RTDVAVLRY	9	Unmodified	_RTDVAVLRY_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8115234375	2	546.811648	1091.60874	-0.72909	-0.00039867	0.41003	0.00022421	-0.31905	-0.00017446	546.8116564100801	43.501	0.61158	43.263	42.989	43.6	-0.23736					52	16	4	0	0	0	0.28047	2	3983	3983;3997		78.264	15.834	1	3574000			70451	7496	49403	49482	76733;76734	76733					0.06660236600191638
RTDVAVLRY	9	Unmodified	_RTDVAVLRY_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.811279296875	2	546.811648	1091.60874	-1.2272	-0.00067107	0.811	0.00044347	-0.41624	-0.00022761	546.8118552325328	43.515	0.56581	43.29	43.025	43.591	-0.22597					55	15	5	0	0	0	0.20652	2	3984	3984;3997		88.177	36.841	1	3708100			70452	7496	49403	49482	76735;76736	76735					0.06660236600191638
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-2|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	625.2968139648438	2	625.296027	1248.5775	-0.091136	-5.6987E-05	0.69492	0.00043453	0.60378	0.00037754	625.2964740985344	58.131	0.64553	57.953	57.714	58.36	-0.17775					27	15	2	0	0	0	0.29525	2	6374	6374;6386		109.44	35.184	1	2928300			70453	5820	49404	49483	76737;76738	76737					-0.03684381224547906
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-2|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	625.296875	2	625.296027	1248.5775	-0.92659	-0.00057939	1.6653	0.0010413	0.73876	0.00046194	625.2969999724102	57.989	0.53654	57.799	57.52	58.056	-0.19018					31	13	3	0	0	0	0.22838	3	6361	6361;6370;6382		117.53	26.925	1	2434300			70454	5820	49404	49483	76739;76740;76741	76739					-0.03684381224547906
RTDYGQVFTY	10	Unmodified	_RTDYGQVFTY_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-2|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	625.2938232421875	2	625.296027	1248.5775	0.11	6.8785E-05	0.73241	0.00045797	0.84242	0.00052676	625.296345422595	58.166	0.56929	57.933	57.78	58.349	-0.23363					27	13	3	0	0	0	0.39693	2	6367	6367;6385		99.013	8.4121	1	1768900			70455	5820	49404	49483	76742;76743	76742					-0.03684381224547906
RTEFNLNQY	9	Unmodified	_RTEFNLNQY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.7882080078125	2	592.78837	1183.56219	-1.2395	-0.00073478	1.8458	0.0010942	0.60631	0.00035941	592.7890138914812	52.282	0.73023	52.163	51.869	52.599	-0.11875					54	18	4	0	0	0	0.071379	1	5432	5432		120.87	35.708	1	1813200			70456	3147	49405	49484	76744	76744					-0.022252480217730408
RTEFNLNQY	9	Unmodified	_RTEFNLNQY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.7879028320312	2	592.78837	1183.56219	-1.29	-0.00076468	1.6703	0.00099015	0.38034	0.00022546	592.7888639678752	52.57	0.655	52.303	52.019	52.674	-0.26754					51	16	5	0	0	0	0.03201	2	5460	5460;5473		139.97	40.596	1	1883800			70457	3147	49405	49484	76745;76746	76745					-0.022252480217730408
RTEFNLNQY	9	Unmodified	_RTEFNLNQY_					0	0	0		ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	ENSG00000111799|ENST00000322507|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.7880249023438	2	592.78837	1183.56219	-0.67073	-0.0003976	1.0488	0.00062174	0.37811	0.00022414	592.7884638308195	52.365	0.85831	52.181	51.778	52.637	-0.18404					57	21	4	0	0	0	0.062622	1	5424	5424		124.08	39.165	1	1807800			70458	3147	49405	49484	76747	76747					-0.022252480217730408
RTERGQVQ	8	Unmodified	_RTERGQVQ_					0	0	0			REV__ENST00000411980.1_1_2:98822802-98822946:+|nuORF	REV__ENST00000411980.1_1_2:98822802-98822946:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7925109863281	2	487.262322	972.510091	-1.1893	-0.00057949	-0.72831	-0.00035488	-1.9176	-0.00093437	487.2610444025675	35.947	0.4532	35.905	35.648	36.101	-0.042458					18	12	2	0	0	0	0.027866	1	2785	2785		26.693	0	1	342960	+		70459	31989	49406	49485	76748	76748					0.022736333551392818
RTETVQKL	8	Unmodified	_RTETVQKL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2709045410156	2	487.785099	973.555644	0.10109	4.9311E-05	-0.64956	-0.00031685	-0.54847	-0.00026753	487.78471981832246	22.946	0.60679	22.744	22.546	23.153	-0.20193					22	12	3	0	0	0	0.027866	1	866	866		35.618	0	1	121410			70460	10520	49407	49486	76749	76749					0.06780858817523949
RTFDAGEFTGW	11	Unmodified	_RTFDAGEFTGW_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant;RIPK4|p.I213Rfs*24|1|0.18|ENSG00000183421|chr21:41749189-41749190|-/TAATC|frameshift_variant;RIPK4|p.V237Gfs*37|1|0.1|ENSG00000183421|chr21:41746737-41746738|-/A|frameshift_variant;RIPK4|p.E97Gfs*65|1|0.22|ENSG00000183421|chr21:41756709-41756710|-/C|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	643.7937622070312	2	643.793652	1285.57275	-2.8415	-0.0018294	2.5122	0.0016173	-0.32937	-0.00021205	643.7951428655603	68.863	1.6188	68.602	68.26	69.879	-0.26166					90	38	4	0	0	0	6.5076E-07	4	7964	7952;7964;7976;7989		173.39	103.76	1	5873200			70461	9226	49408	49487	76750;76751;76752;76753	76751					-0.05861265367343549
RTFDAGEFTGW	11	Unmodified	_RTFDAGEFTGW_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant;RIPK4|p.I213Rfs*24|1|0.18|ENSG00000183421|chr21:41749189-41749190|-/TAATC|frameshift_variant;RIPK4|p.V237Gfs*37|1|0.1|ENSG00000183421|chr21:41746737-41746738|-/A|frameshift_variant;RIPK4|p.E97Gfs*65|1|0.22|ENSG00000183421|chr21:41756709-41756710|-/C|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	643.7935180664062	2	643.793652	1285.57275	0.43161	0.00027787	-0.91118	-0.00058661	-0.47956	-0.00030874	643.7929643064215	68.795	1.3911	68.552	68.266	69.657	-0.24277					91	33	4	0	0	0	1.8824E-07	4	7973	7962;7973;7985;7999		187.5	94.361	1	6504200			70462	9226	49408	49487	76754;76755;76756;76757	76755					-0.05861265367343549
RTFDAGEFTGW	11	Unmodified	_RTFDAGEFTGW_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant;RIPK4|p.I213Rfs*24|1|0.18|ENSG00000183421|chr21:41749189-41749190|-/TAATC|frameshift_variant;RIPK4|p.V237Gfs*37|1|0.1|ENSG00000183421|chr21:41746737-41746738|-/A|frameshift_variant;RIPK4|p.E97Gfs*65|1|0.22|ENSG00000183421|chr21:41756709-41756710|-/C|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	643.7940063476562	2	643.793652	1285.57275	-0.38512	-0.00024794	-0.029447	-1.8958E-05	-0.41457	-0.0002669	643.7935204237003	68.817	1.3972	68.587	68.275	69.672	-0.23048					85	33	4	0	0	0	2.2407E-07	4	7961	7949;7961;7973;7985		186.41	93.268	1	5923600			70463	9226	49408	49487	76758;76759;76760;76761	76759					-0.05861265367343549
RTFENINLS	9	Unmodified	_RTFENINLS_					0	0	0			REV__ZNF776|p.P431Sfs*138|1|0.05|ENSG00000152443|chr19:57754420-57754421|-/TCTTTCTCCAGTGTGAA|frameshift_variant	REV__ZNF776|p.P431Sfs*138|1|0.05|ENSG00000152443|chr19:57754420-57754421|-/TCTTTCTCCAGTGTGAA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7747802734375	2	547.285463	1092.55637	-0.50524	-0.00027651	-4.1798	-0.0022876	-4.6851	-0.0025641	547.2831650122916	33.627	0.84354	33.427	33.094	33.938	-0.20019					46	21	4	0	0	0	0.024511	1	2382	2382		32.812	13.452	1	1206700	+		70464	37821	49409	49488	76762	76762					0.013796534665516447
RTFENINLS	9	Unmodified	_RTFENINLS_					0	0	0			REV__ZNF776|p.P431Sfs*138|1|0.05|ENSG00000152443|chr19:57754420-57754421|-/TCTTTCTCCAGTGTGAA|frameshift_variant	REV__ZNF776|p.P431Sfs*138|1|0.05|ENSG00000152443|chr19:57754420-57754421|-/TCTTTCTCCAGTGTGAA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.285463	1092.55637	-0.7829	-0.00042847	-10.301	-0.0056378	-11.084	-0.0060663	547.7830225676242	33.838	1.2913	33.833	33.277	34.568	-0.0045624	0.29233	-0.006431	NaN	8.6937	68	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1032000	+		70465	37821	49409	49488							0.013796534665516447
RTFFNFSDPGP	11	Unmodified	_RTFFNFSDPGP_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	642.8017578125	2	642.80402	1283.59349	-0.24043	-0.00015455	-2.6771	-0.0017209	-2.9176	-0.0018754	642.8022300845415	36.787	0.83057	36.571	36.286	37.117	-0.21661					59	20	4	0	0	0	0.94988	1	2899	2899		47.96	6.5329	1	2089100	+		70466	24322	49410	49489	76763	76763					-0.036966749876683025
RTFGARDECSK	11	Unmodified	_RTFGARDECSK_					0	0	0		ENST00000470236.1_1_3:136565388-136580479:-|nuORF	ENST00000470236.1_1_3:136565388-136580479:-|nuORF	ENST00000470236.1_1_3:136565388-136580479:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	635.3032836914062	2	635.303861	1268.59317	0.16507	0.00010487	-1.2111	-0.0007694	-1.046	-0.00066453	635.3030150008391	32.678	0.74448	32.69	32.45	33.194	0.011799					51	19	4	0	0	0	0.53345	1	2284	2284		74.165	5.3189	1	2714100			70467	14928	49411	49490	76764	76764					-0.030384179791781207
RTFGGNKLY	9	Unmodified	_RTFGGNKLY_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2860107421875	2	528.285266	1054.55598	-0.78274	-0.00041351	0.61637	0.00032562	-0.16637	-8.7891E-05	528.2854444798484	35.757	0.56548	35.552	35.186	35.752	-0.20518					43	14	4	0	0	0	0.26966	1	2737	2737		79.713	15.505	1	2211600			70468	3592	49412	49491	76765	76765					0.0308827853737057
RTFGGNKLY	9	Unmodified	_RTFGGNKLY_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.28662109375	2	528.285266	1054.55598	-0.5396	-0.00028506	0.2919	0.00015421	-0.2477	-0.00013085	528.2852709098423	35.707	0.59618	35.494	35.154	35.75	-0.21246					49	15	5	0	0	0	0.28753	1	2729	2729		77.318	11.514	1	2227000			70469	3592	49412	49491	76766	76766					0.0308827853737057
RTFGGNKLY	9	Unmodified	_RTFGGNKLY_					0	0	0		nc|ENSG00000116906|O15228-2|GNPAT;ENSG00000116906|ENST00000366647|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.288818359375	2	528.285266	1054.55598	-0.28993	-0.00015316	0.048395	2.5566E-05	-0.24153	-0.0001276	528.2851714485105	35.584	0.59753	35.398	35.023	35.621	-0.18675					52	15	5	0	0	0	0.29158	2	2695	2695;2706		76.774	7.9873	1	2116100			70470	3592	49412	49491	76767;76768	76767					0.0308827853737057
RTFPDPTSW	9	Unmodified	_RTFPDPTSW_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.766357421875	2	553.766906	1105.51926	-0.1663	-9.2089E-05	-0.65278	-0.00036149	-0.81908	-0.00045358	553.7668461886972	61.586	1.2477	61.372	60.92	62.168	-0.21375					109	30	5	0	0	0	0.030064	4	6883	6872;6883;6894;6905		141.52	51.151	1	3239900			70471	163	49413	49492	76769;76770;76771;76772	76770					-0.029280180792056854
RTFPDPTSW	9	Unmodified	_RTFPDPTSW_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7662963867188	2	553.766906	1105.51926	-0.8754	-0.00048477	0.47438	0.0002627	-0.40102	-0.00022207	553.7671845295998	61.433	1.3656	61.257	60.753	62.119	-0.1761					95	33	4	0	0	0	0.030064	5	6871	6858;6871;6881;6893;6899		141.52	59.28	1	3054400			70472	163	49413	49492	76773;76774;76775;76776;76777	76774					-0.029280180792056854
RTFPDPTSW	9	Unmodified	_RTFPDPTSW_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7666625976562	2	553.766906	1105.51926	-0.4115	-0.00022788	-0.056335	-3.1196E-05	-0.46784	-0.00025907	553.7668835344149	61.662	1.2484	61.405	60.888	62.136	-0.25725					98	30	5	0	0	0	0.03666	5	6900	6867;6878;6888;6900;6914		136.27	54.028	1	3214500			70473	163	49413	49492	76778;76779;76780;76781;76782	76781					-0.029280180792056854
RTGGIKWEP	9	Unmodified	_RTGGIKWEP_					0	0	0		ENST00000373018.7_1_6:41745774-41747608:-|nuORF	ENST00000373018.7_1_6:41745774-41747608:-|nuORF	ENST00000373018.7_1_6:41745774-41747608:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3131713867188	2	522.285266	1042.55598	-1.5913	-0.0008311	3.0279	0.0015814	1.4366	0.00075034	522.2870632602486	91.441	0.59264	91.441	91.092	91.685	0					20	13	2	0	0	0	0.023473	1	11560	11560		75.043	8.614	1	93283			70474	13063	49414	49493	76783	76783					0.036402785373638835
RTGGQCHLPI	10	Unmodified	_RTGGQCHLPI_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3029174804688	2	541.2822	1080.54985	-0.48169	-0.00026073	2.6393	0.0014286	2.1576	0.0011679	541.2830059843241	56.68	0.27422	56.513	56.363	56.637	-0.1672					10	6	2	0	0	0	0.03519	1	6168	6168		37.159	1.5408	1	307730			70475	4940	49415	49494	76784	76784					0.012794370342135153
RTGIALIRL	9	Unmodified	_RTGIALIRL_					0	0	0			REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2722473144531	2	506.834926	1011.6553	-0.75728	-0.00038382	0.27815	0.00014097	-0.47913	-0.00024284	506.83490011280713	24.675	0.62298	24.675	24.429	25.052	0					32	13	3	0	0	0	0.024495	1	1068	1068		26.693	0	1	502910	+		70476	20498	49416	49495	76785	76785					0.14993721222128897
RTGKARACWTV	11	Unmodified	_RTGKARACWTV_					0	0	0			REV__ENST00000261475.9_1_14:35591468-35591516:-|nuORF	REV__ENST00000261475.9_1_14:35591468-35591516:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.89501953125	3	416.892513	1247.65571	-0.52088	-0.00021715	1.6991	0.00070832	1.1782	0.00049117	417.2263431597182	30.492	1.3368	30.248	29.655	30.992	-0.24415					56	31	2	0	0	0	0.95317	1	1940	1940		47.228	2.5882	1	1938100	+		70477	29625	49417	49496	76786	76786					0.041787728796407464
RTGKARACWTV	11	Unmodified	_RTGKARACWTV_					0	0	0			REV__ENST00000261475.9_1_14:35591468-35591516:-|nuORF	REV__ENST00000261475.9_1_14:35591468-35591516:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.8947448730469	3	416.892513	1247.65571	0.13146	5.4803E-05	-0.15941	-6.6457E-05	-0.027955	-1.1654E-05	417.22640988903834	30.376	1.3833	30.226	29.626	31.009	-0.14952					61	32	3	0	0	0	0.98625	1	1889	1889		39.873	0	1	2127100	+		70478	29625	49417	49496	76787	76787					0.041787728796407464
RTGPWVGRRRS	11	Unmodified	_RTGPWVGRRRS_					0	0	0			REV__ENST00000565698.5_2_16:28109302-28109830:-|nuORF	REV__ENST00000565698.5_2_16:28109302-28109830:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2432556152344	3	443.253321	1326.73813	-0.40081	-0.00017766	2.2117	0.00098034	1.8109	0.00080267	443.25439649671694	38.52	1.0813	38.437	37.918	38.999	-0.082516					53	29	3	0	0	0	0.024768	1	3187	3187		36.528	1.3497	1	168530	+		70479	35284	49418	49497	76788	76788					0.08783431002825637
RTGRPARPSLV	11	Unmodified	_RTGRPARPSLV_					0	0	0			REV__ENST00000540691.5_2_19:18679489-18679762:+|nuORF	REV__ENST00000540691.5_2_19:18679489-18679762:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.3617553710938	2	605.36237	1208.71019	0.38082	0.00023054	-2.137	-0.0012937	-1.7562	-0.0010631	605.3607985561961	107.01	0.28292	106.85	106.74	107.02	-0.15772					19	10	2	0	0	0	1.0392	1	13288	13288		28.081	0.19925	1	89506	+		70480	34754	49419	49498	76789	76789					0.11418108022735396
RTGYEQLLS	9	Unmodified	_RTGYEQLLS_					0	0	0			REV__nc|ENSG00000139546|Q15633-2|TARBP2	REV__nc|ENSG00000139546|Q15633-2|TARBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.3060302734375	2	533.780013	1065.54547	-0.41346	-0.00022069	0.022851	1.2197E-05	-0.3906	-0.0002085	534.2831151193913	41.385	0.15754	41.249	41.176	41.334	-0.13553					5	3	2	0	0	0	0.024495	1	3649	3649		26.693	0	1	29617	+		70481	23946	49420	49499	76790	76790					0.015322510922715082
RTGYEQLLS	9	Unmodified	_RTGYEQLLS_					0	0	0			REV__nc|ENSG00000139546|Q15633-2|TARBP2	REV__nc|ENSG00000139546|Q15633-2|TARBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.780013	1065.54547	-0.33779	-0.00018031	0.64177	0.00034256	0.30398	0.00016226	533.7807019227597	41.645	0.14592	41.645	41.542	41.688	0	0.19787	0.00053807	NaN	19.997	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54664	+		70482	23946	49420	49499							0.015322510922715082
RTGYIALTI	9	Unmodified	_RTGYIALTI_					0	0	0			REV__ENSG00000197629|ENST00000361050|MPEG1	REV__ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2972412109375	2	504.297842	1006.58113	-1.3773	-0.00069455	0.47891	0.00024151	-0.89835	-0.00045304	504.2979566664299	21.608	1.2011	21.395	21.118	22.319	-0.2128					59	24	5	0	0	0	0.59099	1	675	675		53.351	3.3269	1	2079500	+		70483	28332	49421	49500	76791	76791					0.0781033333993264
RTHAGFYR	8	Unmodified	_RTHAGFYR_					0	0	0		nc|ENSG00000069188|Q58EX2-2|SDK2;SDK2|p.R2017Gfs*28|1|0.24|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.29766845703125	2	504.262125	1006.5097	-0.28012	-0.00014125	-2.2438	-0.0011315	-2.524	-0.0012727	504.26071161371084	36.739	0.24141	36.523	36.408	36.65	-0.21661					4	2	2	0	0	0	0.027866	1	2908	2908		19.36	1.0356	1	76958			70484	18071	49422	49501	76792	76792					0.006702584259528521
RTHATVPIR	9	Unmodified	_RTHATVPIR_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2560424804688	2	525.811982	1049.60941	-0.20947	-0.00011014	2.6986	0.001419	2.4892	0.0013088	525.8127047241197	45.839	0.56049	45.742	45.326	45.887	-0.096653					23	15	2	0	0	0	0.024477	1	4384	4384		35.618	15.136	1	119950			70485	2342	49423	49502	76793	76793					0.08659076039862157
RTHPRNLN	8	Unmodified	_RTHPRNLN_					0	0	0		nc|ENSG00000184162|Q86WQ0-2|NR2C2AP	nc|ENSG00000184162|Q86WQ0-2|NR2C2AP	nc|ENSG00000184162|Q86WQ0-2|NR2C2AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.29766845703125	2	504.278306	1006.54206	-0.37238	-0.00018778	4.0386	0.0020366	3.6662	0.0018488	504.2801540029523	36.807	0.19957	36.59	36.45	36.65	-0.21661					10	4	3	0	0	0	0.027866	1	2908	2908		7.6903	0	1	68991			70486	18583	49424	49503	76794	76794					0.03905045828935272
RTHSLLLLL	9	Unmodified	_RTHSLLLLL_					0	0	0		ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.343017578125	2	533.342584	1064.67061	-0.74768	-0.00039877	0.83914	0.00044755	0.091461	4.878E-05	533.3428549880824	65.919	0.7263	65.668	65.395	66.121	-0.25112					45	17	4	0	0	0	0.2508	1	7543	7543		82.241	27.464	1	1581900			70487	10930	49425	49504	76795	76795					0.14086588019335977
RTHTGVKPF	9	Unmodified	_RTHTGVKPF_					0	0	0		EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7911376953125	2	521.793258	1041.57196	-1.3824	-0.00072135	-3.4601	-0.0018054	-4.8425	-0.0025268	521.7916407613886	21.212	1.6353	21.212	20.656	22.291	0					110	33	9	0	0	0	0.31037	3	630	630;641;653		74.255	9.6365	1	3431900			70488	686	49426	49505	76796;76797;76798	76796					0.05283984774268902
RTHTGVKPF	9	Unmodified	_RTHTGVKPF_					0	0	0		EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7913818359375	2	521.793258	1041.57196	-0.58276	-0.00030408	-4.1743	-0.0021781	-4.7571	-0.0024822	521.791223895646	21.314	1.2508	21.224	20.911	22.162	-0.090092					75	25	6	0	0	0	0.29158	4	622	622;632;643;655		76.774	23.423	1	3850600			70489	686	49426	49505	76799;76800;76801;76802	76799					0.05283984774268902
RTHTGVKPF	9	Unmodified	_RTHTGVKPF_					0	0	0		EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	EGR1|p.E393V|1|0.12|ENSG00000120738|chr5:138467627-138467627|A/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.793258	1041.57196	0.11664	6.0863E-05	-10.566	-0.0055134	-10.45	-0.0054525	521.7877386956494	21.583	0.38232	21.406	21.209	21.591	-0.17721	0.12741	-0.005851	NaN	76.774	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52271			70490	686	49426	49505							0.05283984774268902
RTHTLILAL	9	Unmodified	_RTHTLILAL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.3268432617188	2	519.326934	1036.63931	-0.61523	-0.0003195	0.44748	0.00023239	-0.16774	-8.7114E-05	519.3270543866403	68.553	0.94891	68.553	68.217	69.166	0					42	24	2	0	0	0	0.096521	2	8220	8220;8231		111.65	18.453	1	4944900	+		70491	24490	49427	49506	76803;76804	76803					0.12246014985225884
RTHTLILAL	9	Unmodified	_RTHTLILAL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.3265380859375	2	519.326934	1036.63931	0.068286	3.5463E-05	-0.11016	-5.7211E-05	-0.041877	-2.1748E-05	519.3267295811261	68.869	1.1359	68.576	68.251	69.387	-0.29267					46	29	2	0	0	0	0.096521	2	8228	8228;8265		111.65	10.048	1	5214800	+		70492	24490	49427	49506	76805;76806	76805					0.12246014985225884
RTHTLILAL	9	Unmodified	_RTHTLILAL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.3268432617188	2	519.326934	1036.63931	-0.16639	-8.641E-05	0.082068	4.262E-05	-0.084319	-4.3789E-05	519.3268692064853	68.572	1.0775	68.591	68.314	69.392	0.018913					46	28	2	0	0	0	0.15029	1	8144	8144		99.375	6.1795	1	4698200	+		70493	24490	49427	49506	76807	76807					0.12246014985225884
RTHTLILAL	9	Unmodified	_RTHTLILAL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	519.326934	1036.63931	-0.61523	-0.0003195	0.44748	0.00023239	-0.16774	-8.7114E-05	519.3270543866403	68.553	0.94891	68.553	68.217	69.166	0	-0.020211	0.00028294	NaN	111.65	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4944900	+		70494	24490	49427	49506							0.12246014985225884
RTIHSCFEVSI	11	Unmodified	_RTIHSCFEVSI_					0	0	0			REV__ENST00000588867.1_1_18:21114346-21115663:-|nuORF	REV__ENST00000588867.1_1_18:21114346-21115663:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.885986328125	3	431.220295	1290.63906	-0.27067	-0.00011672	-0.72583	-0.00031299	-0.9965	-0.00042971	431.21998739767645	22.169	1.408	22.094	21.467	22.875	-0.075296					72	29	4	0	0	0	0.024765	1	740	740		47.228	6.1476	1	1096200	+		70495	24092	49428	49507	76808	76808					0.005362272030652093
RTIHYPDPL	9	Unmodified	_RTIHYPDPL_					0	0	0		ENST00000482189.1_1_12:100402990-100403251:-|nuORF	ENST00000482189.1_1_12:100402990-100403251:-|nuORF	ENST00000482189.1_1_12:100402990-100403251:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2971801757812	2	556.298373	1110.58219	1.157	0.00064364	-3.1018	-0.0017255	-1.9448	-0.0010819	556.2965587112253	107.12	0.65836	107.12	106.81	107.47	0					31	17	2	0	0	0	0.89441	1	13741	13741		32.812	0	1	128400			70496	15250	49429	49508	76809	76809					0.031325477088330445
RTIHYPDPL	9	Unmodified	_RTIHYPDPL_					0	0	0		ENST00000482189.1_1_12:100402990-100403251:-|nuORF	ENST00000482189.1_1_12:100402990-100403251:-|nuORF	ENST00000482189.1_1_12:100402990-100403251:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.298373	1110.58219	-0.11443	-6.3658E-05	-2.304	-0.0012817	-2.4185	-0.0013454	556.2971109724672	107.44	0.39507	107.31	106.95	107.35	-0.12381	0.075985	-0.00012784	NaN	32.812	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142840			70497	15250	49429	49508							0.031325477088330445
RTIHYPDPL	9	Unmodified	_RTIHYPDPL_					0	0	0		ENST00000482189.1_1_12:100402990-100403251:-|nuORF	ENST00000482189.1_1_12:100402990-100403251:-|nuORF	ENST00000482189.1_1_12:100402990-100403251:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	556.298373	1110.58219	-1.2668	-0.00070474	-0.92632	-0.00051531	-2.1931	-0.00122	556.7992664098421	107.44	0.18756	107.31	107.14	107.33	-0.1346	0.070441	0.001405	NaN	32.812	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79624			70498	15250	49429	49508							0.031325477088330445
RTILVDNNTW	10	Unmodified	_RTILVDNNTW_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	616.3253784179688	2	616.325119	1230.63569	-0.50564	-0.00031164	0.0043616	2.6882E-06	-0.50128	-0.00030895	616.3251300790524	57.651	0.64114	57.461	57.148	57.789	-0.19017					56	16	4	0	0	0	0.03873	5	6298	6287;6298;6309;6321;6336		150.81	78.933	1	12455000			70499	4843	49430	49509	76810;76811;76812;76813;76814	76811					0.029593004206844853
RTINPKFW	8	Unmodified	_RTINPKFW_					0	0	0			REV__ENSG00000131746|ENST00000254051|TNS4	REV__ENSG00000131746|ENST00000254051|TNS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3192138671875	2	531.298176	1060.5818	-0.16313	-8.6672E-05	-3.0678	-0.0016299	-3.2309	-0.0017166	531.7984201969249	93.77	0.65188	93.623	93.261	93.913	-0.14705					23	14	3	0	0	0	0.027866	1	11512	11512		21.96	0	1	47981	+		70500	23230	49431	49510	76815	76815					0.05393172779668021
RTINVYPNF	9	Unmodified	_RTINVYPNF_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.2981567382812	2	562.298373	1122.58219	0.39736	0.00022343	-0.79873	-0.00044912	-0.40137	-0.00022569	562.2980780658523	58.515	0.65965	58.273	58.001	58.661	-0.24165					27	15	3	0	0	0	0.23085	1	6410	6410		84.916	13.62	1	2368600			70501	1306	49432	49511	76816	76816					0.02580547708839731
RTINVYPNF	9	Unmodified	_RTINVYPNF_					0	0	0		nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	nc|ENSG00000065518|O95168-2|NDUFB4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	562.298373	1122.58219	0.019639	1.1043E-05	-0.46271	-0.00026018	-0.44307	-0.00024914	562.2984934792033	58.367	0.64132	58.177	57.978	58.619	-0.19017	-0.058073	5.2468E-05	NaN	84.916	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2257200			70502	1306	49432	49511							0.02580547708839731
RTIQAAFRG	9	Unmodified	_RTIQAAFRG_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.72796630859375	2	510.290882	1018.56721	-0.94294	-0.00048118	-1.2255	-0.00062534	-2.1684	-0.0011065	510.2916058503454	55.021	0.5741	55.119	54.949	55.523	0.098015					33	15	3	0	0	0	0.024263	1	5952	5952		51.335	0	1	393310			70503	1335	49433	49512	76817	76817					0.05867100631519406
RTISEMQSL	9	Unmodified	_RTISEMQSL_					0	0	0		ENST00000591629.1_1_18:36787905-36787971:-|nuORF	ENST00000591629.1_1_18:36787905-36787971:-|nuORF	ENST00000591629.1_1_18:36787905-36787971:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.3397216796875	2	532.773874	1063.53319	0.5955	0.00031727	0.04888	2.6042E-05	0.64438	0.00034331	532.7736532889134	97.809	0.65045	97.672	97.24	97.89	-0.1367					27	14	3	0	0	0	0.024405	1	12127	12127		27.882	6.9353	1	282920			70504	17360	49434	49513	76818	76818					0.003968913576045452
RTISVGQVR	9	Unmodified	_RTISVGQVR_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	2	508.30399	1014.59343	-0.56885	-0.00028915	-0.97208	-0.00049411	-1.5409	-0.00078326	508.30381095689006	26.178	1.9952	26.178	25.694	27.689	0					146	46	6	0	0	0	0.17822	1	1295	1295		93.195	12.741	1	77267000	+		70505	23417	49435	49514	76819	76819					0.08671369803005291
RTISVGQVR	9	Unmodified	_RTISVGQVR_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3034362792969	2	508.30399	1014.59343	-0.56752	-0.00028847	-1.0697	-0.00054374	-1.6372	-0.00083221	508.30375317172104	26.205	2.0458	26.182	25.864	27.91	-0.023088					152	51	6	0	0	0	0.33245	1	1297	1297		71.296	5.8303	1	77525000	+		70506	23417	49435	49514	76820	76820					0.08671369803005291
RTISVGQVR	9	Unmodified	_RTISVGQVR_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.3028259277344	2	508.30399	1014.59343	-0.029451	-1.497E-05	-1.7887	-0.00090921	-1.8182	-0.00092418	508.30340766595833	26.03	1.7409	26.111	25.793	27.534	0.081293					138	43	6	0	0	0	0.15366	1	1216	1216		98.629	21.312	1	77932000	+		70507	23417	49435	49514	76821	76821					0.08671369803005291
RTIVLTTHF	9	Unmodified	_RTIVLTTHF_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.31640625	2	544.316566	1086.61858	-0.74185	-0.0004038	0.78427	0.00042689	0.042421	2.3091E-05	544.316695374466	49.151	0.8748	49.05	48.765	49.64	-0.1008					84	22	5	0	0	0	0.19099	3	4915	4915;4926;4939		90.37	37.018	1	3035000			70508	7759	49436	49515	76822;76823;76824	76822					0.07873424605531909
RTIVLTTHF	9	Unmodified	_RTIVLTTHF_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.3164672851562	2	544.316566	1086.61858	-0.24245	-0.00013197	-0.056293	-3.0641E-05	-0.29874	-0.00016261	544.3163675931798	49.422	0.90511	49.142	48.861	49.766	-0.27977					69	23	5	0	0	0	0.2101	2	4960	4948;4960		87.696	26.724	1	3280600			70509	7759	49436	49515	76825;76826	76826					0.07873424605531909
RTIVLTTHF	9	Unmodified	_RTIVLTTHF_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3164672851562	2	544.316566	1086.61858	-0.55928	-0.00030443	0.36178	0.00019692	-0.19751	-0.00010751	544.3165183313649	49.279	0.87066	49.097	48.809	49.68	-0.18206					79	22	5	0	0	0	0.32811	2	4926	4926;4937		71.877	23.962	1	3024500			70510	7759	49436	49515	76827;76828	76827					0.07873424605531909
RTKAANKS	8	Unmodified	_RTKAANKS_					0	0	0			REV__ENSG00000159263|ENST00000290399|SIM2	REV__ENSG00000159263|ENST00000290399|SIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.52923583984375	2	438.256508	874.498464	0.38238	0.00016758	4.2195	0.0018492	4.6019	0.0020168	438.2581476527358	32.494	0.68573	32.302	31.771	32.457	-0.19261					20	15	2	0	0	0	0.027866	1	2176	2176		24.203	3.7209	1	121150	+		70511	25245	49437	49516	76829	76829					0.05619436331789984
RTKASVHTL	9	Unmodified	_RTKASVHTL_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.79833984375	2	506.79854	1011.58253	0.0086168	4.367E-06	-0.55909	-0.00028335	-0.55047	-0.00027898	506.79824343924076	20.241	0.87269	20.073	19.718	20.591	-0.16774					43	17	4	0	0	0	0.56934	2	521	521;532		54.776	13.35	1	1583300			70512	8173	49438	49517	76830;76831	76830					0.0771996742871579
RTKASVHTL	9	Unmodified	_RTKASVHTL_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.79833984375	2	506.79854	1011.58253	0.8375	0.00042444	-1.3741	-0.0006964	-0.53661	-0.00027195	506.7978465459132	20.309	0.87624	20.113	19.755	20.632	-0.19577					38	17	3	0	0	0	0.35646	3	516	516;525;537		68.787	12.066	1	1521500			70513	8173	49438	49517	76832;76833;76834	76832					0.0771996742871579
RTKASVHTL	9	Unmodified	_RTKASVHTL_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7981262207031	2	506.79854	1011.58253	-0.088919	-4.5064E-05	-0.35505	-0.00017994	-0.44397	-0.000225	506.79838208765176	20.366	1.2294	20.142	19.533	20.762	-0.22344					50	24	4	0	0	0	0.19099	1	519	519		90.37	32.559	1	1390200			70514	8173	49438	49517	76835	76835					0.0771996742871579
RTKDVCVIK	9	Unmodified	_RTKDVCVIK_					0	0	0			REV__ENST00000417201.3_1_9:125003423-125003585:-|nuORF	REV__ENST00000417201.3_1_9:125003423-125003585:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.2906494140625	2	531.310426	1060.6063	-0.75415	-0.00040069	2.7267	0.0014487	1.9726	0.001048	531.3117059336419	54.935	0.1001	55.033	54.982	55.083	0.098015					4	2	2	0	0	0	0.024477	1	5969	5969		35.618	19.145	1	58145	+		70515	32091	49439	49518	76836	76836					0.07842064870851573
RTKIIKAA	8	Unmodified	_RTKIIKAA_					0	0	0			REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.8030090332031	2	450.803094	899.591636	0.57218	0.00025794	-0.49335	-0.0002224	0.078834	3.5539E-05	450.8027092425419	19.42	0.44479	19.26	19.084	19.529	-0.16079					21	8	4	0	0	0	1.0572	1	433	433		28.254	1.4582	1	188720	+		70516	24446	49440	49519	76837	76837					0.13782360785023684
RTKLAARDP	9	Unmodified	_RTKLAARDP_					0	0	0		ENST00000357802.6_1_22:42973094-42978007:-|nuORF	ENST00000357802.6_1_22:42973094-42978007:-|nuORF	ENST00000357802.6_1_22:42973094-42978007:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2637329101562	2	514.30399	1026.59343	-1.5419	-0.000793	0.96623	0.00049693	-0.57567	-0.00029607	514.3044246796318	29.817	0.64924	29.817	29.447	30.096	0					47	15	4	0	0	0	0.024477	1	1831	1831		35.618	8.9254	1	1976600			70517	12705	49441	49520	76838	76838					0.08119369802966503
RTKNWRVP	8	Unmodified	_RTKNWRVP_					0	0	0			REV__nc|ENSG00000136883|Q96FN5|KIF12	REV__nc|ENSG00000136883|Q96FN5|KIF12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.80859375	2	528.8067	1055.59885	-0.011791	-6.2351E-06	4.2532	0.0022491	4.2414	0.0022429	529.3112328428599	73.021	0.52412	73.03	72.693	73.217	0.0096512					15	12	2	0	0	0	0.027866	1	8841	8841		20.482	12.251	1	160630	+		70518	23700	49442	49521	76839	76839					0.0732709338544737
RTKPSTTL	8	Unmodified	_RTKPSTTL_					0	0	0			REV__ENSG00000171735|ENST00000303635|CAMTA1	REV__ENSG00000171735|ENST00000303635|CAMTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2677307128906	2	452.266542	902.51853	-0.52137	-0.0002358	0.61189	0.00027674	0.090519	4.0939E-05	452.26664987437636	21.171	0.59098	21.171	20.9	21.491	0					29	11	3	0	0	0	0.68164	1	639	639		68.787	2.3575	1	352790	+		70519	26596	49443	49522	76840	76840					0.06337187271753919
RTKRPLAPPTG	11	Unmodified	_RTKRPLAPPTG_					0	0	0			REV__nc|ENSG00000073803|O43283-5|MAP3K13	REV__nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.35888671875	2	597.359296	1192.70404	0.52306	0.00031246	-1.2859	-0.00076816	-0.76286	-0.0004557	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	1.0392	1	12237	12237		28.081	3.5623	1	2779900	+		70520	20511	49444	49523	76841	76841					0.11539589791209437
RTKRQAAH	8	Unmodified	_RTKRQAAH_					0	0	0		ENST00000489541.1_1_12:7169158-7169245:+|nuORF;ENST00000406697.5_1_12:7163490-7169817:+|nuORF;ENST00000328916.7_1_12:7169095-7169817:+|nuORF;ENST00000423384.5_1_12:7168629-7169817:+|nuORF	ENST00000489541.1_1_12:7169158-7169245:+|nuORF	ENST00000489541.1_1_12:7169158-7169245:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2715759277344	2	484.280849	966.547145	-0.54364	-0.00026327	1.8531	0.00089743	1.3095	0.00063416	484.2811841386987	32.359	0.56673	32.422	32.2	32.766	0.062885					36	14	4	0	0	0	0.027866	1	2221	2221		45.952	3.5558	1	391240			70521	12312	49445	49524	76842	76842					0.06253349691553467
RTKRQAAH	8	Unmodified	_RTKRQAAH_					0	0	0		ENST00000489541.1_1_12:7169158-7169245:+|nuORF;ENST00000406697.5_1_12:7163490-7169817:+|nuORF;ENST00000328916.7_1_12:7169095-7169817:+|nuORF;ENST00000423384.5_1_12:7168629-7169817:+|nuORF	ENST00000489541.1_1_12:7169158-7169245:+|nuORF	ENST00000489541.1_1_12:7169158-7169245:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.272216796875	2	484.280849	966.547145	0.063464	3.0735E-05	2.9905	0.0014483	3.054	0.001479	484.28223205519157	32.542	0.53845	32.305	32.042	32.581	-0.23667					23	12	3	0	0	0	0.027866	1	2287	2287		33.516	24.045	1	189500			70522	12312	49445	49524	76843	76843					0.06253349691553467
RTKRQAAH	8	Unmodified	_RTKRQAAH_					0	0	0		ENST00000489541.1_1_12:7169158-7169245:+|nuORF;ENST00000406697.5_1_12:7163490-7169817:+|nuORF;ENST00000328916.7_1_12:7169095-7169817:+|nuORF;ENST00000423384.5_1_12:7168629-7169817:+|nuORF	ENST00000489541.1_1_12:7169158-7169245:+|nuORF	ENST00000489541.1_1_12:7169158-7169245:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.27197265625	2	484.280849	966.547145	-0.023807	-1.1529E-05	2.8828	0.0013961	2.859	0.0013846	484.28223045096496	32.556	0.52418	32.398	32.121	32.646	-0.15772					25	12	3	0	0	0	0.027866	1	2267	2267		35.201	10.998	1	238950			70523	12312	49445	49524	76844	76844					0.06253349691553467
RTKTEISEM	9	Unmodified	_RTKTEISEM_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552	CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.7785034179688	2	547.779156	1093.54376	-0.72621	-0.0003978	0.05878	3.2199E-05	-0.66743	-0.0003656	547.7789990554987	27.111	0.9263	26.954	26.464	27.391	-0.15664					47	21	3	0	0	0	0.45795	1	1451	1451		62.107	1.1355	1	946560		+	70524	494	49446	49525	76845	76845					0.0007287401201665489
RTKVKKQK	8	Unmodified	_RTKVKKQK_					0	0	0			REV__ENST00000477427.1_1_1:155340246-155340297:-|nuORF	REV__ENST00000477427.1_1_1:155340246-155340297:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3028259277344	2	508.340375	1014.6662	0.095592	4.8593E-05	-2.1735	-0.0011049	-2.078	-0.0010563	508.3394633525921	25.989	0.16715	26.069	25.922	26.09	0.08009					8	3	3	0	0	0	0.027866	1	1216	1216		47.916	0	1	232510	+		70525	33331	49447	49526	76846	76846					0.15945123596418398
RTKVWGYTG	9	Unmodified	_RTKVWGYTG_					0	0	0		ENST00000590258.2_2_18:34359160-34359487:-|nuORF	ENST00000590258.2_2_18:34359160-34359487:-|nuORF	ENST00000590258.2_2_18:34359160-34359487:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2844848632812	2	534.285266	1066.55598	0.071867	3.8398E-05	-1.322	-0.00070631	-1.2501	-0.00066791	534.2847734562439	105.72	0.98301	105.72	105.41	106.39	0					83	35	3	0	0	0	0.83071	1	13570	13570		37.159	4.3467	1	282140			70526	17326	49448	49527	76847	76847					0.025362785373545194
RTKVWGYTG	9	Unmodified	_RTKVWGYTG_					0	0	0		ENST00000590258.2_2_18:34359160-34359487:-|nuORF	ENST00000590258.2_2_18:34359160-34359487:-|nuORF	ENST00000590258.2_2_18:34359160-34359487:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2828979492188	2	534.285266	1066.55598	-1.6636	-0.00088886	-0.6767	-0.00036155	-2.3403	-0.0012504	534.284729059812	107.96	0.61497	107.82	107.51	108.12	-0.13649					68	31	3	0	0	0	0.93097	1	13363	13363		30.318	1.1682	1	2941900			70527	17326	49448	49527	76848	76848					0.025362785373545194
RTKYNCPARWS	11	Unmodified	_RTKYNCPARWS_					0	0	0		nc|ENSG00000169344|P07911-5|UMOD	nc|ENSG00000169344|P07911-5|UMOD	nc|ENSG00000169344|P07911-5|UMOD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7643737792969	3	461.231306	1380.67209	-0.51578	-0.00023789	-4.2602	-0.001965	-4.776	-0.0022028	461.22947396064893	21.76	0.99032	21.76	21.441	22.432	0					38	20	3	0	0	0	0.024726	1	692	692		38.714	3.5359	1	124620			70528	18499	49449	49528	76849	76849					-0.0030214595424240542
RTLAEIAKV	9	Unmodified	_RTLAEIAKV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.8085021972656	2	500.811116	999.60768	0.34439	0.00017248	-0.54929	-0.00027509	-0.20489	-0.00010261	500.8107146826074	42.269	1.1212	42.269	41.954	43.075	0					97	31	5	0	0	0	0.2101	2	3892	3879;3892		87.696	25.589	1	6627600			70529	5939	49450	49529	76850;76851	76851					0.10786022231275183
RTLAEIAKV	9	Unmodified	_RTLAEIAKV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8087463378906	2	500.811116	999.60768	-0.15301	-7.6627E-05	0.17282	8.6549E-05	0.019813	9.9224E-06	500.81107751280337	42.448	1.2791	42.315	42.049	43.328	-0.13219					95	35	4	0	0	0	0.20652	1	3897	3897		88.177	5.9364	1	6064900			70530	5939	49450	49529	76852	76852					0.10786022231275183
RTLAEIAKV	9	Unmodified	_RTLAEIAKV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.8096618652344	2	500.811116	999.60768	0.027771	1.3908E-05	-0.062812	-3.1457E-05	-0.035041	-1.7549E-05	500.81096795633755	42.383	1.1452	42.409	42.152	43.298	0.026012					94	31	4	0	0	0	0.33603	2	3851	3840;3851		70.816	8.7088	1	6412100			70531	5939	49450	49529	76853;76854	76854					0.10786022231275183
RTLAHLAVRN	10	Unmodified	_RTLAHLAVRN_					0	0	0			REV__ENSG00000090971|ENST00000205194|NAT14	REV__ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.84326171875	2	575.843813	1149.67307	-2.0743	-0.0011945	0.6137	0.00035339	-1.4606	-0.00084106	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.0122	1	11577	11577		44.377	0	1	5238400	+		70532	20891	49451	49530	76855	76855					0.10422436476960684
RTLAHLAVRN	10	Unmodified	_RTLAHLAVRN_					0	0	0			REV__ENSG00000090971|ENST00000205194|NAT14	REV__ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8433837890625	2	575.843813	1149.67307	-0.26488	-0.00015253	-1.2073	-0.00069524	-1.4722	-0.00084777	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0719	1	11549	11549		36.447	2.5251	1	4946400	+		70533	20891	49451	49530	76856	76856					0.10422436476960684
RTLAHLAVRN	10	Unmodified	_RTLAHLAVRN_					0	0	0			REV__ENSG00000090971|ENST00000205194|NAT14	REV__ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8425903320312	2	575.843813	1149.67307	-0.10957	-6.3095E-05	-1.3506	-0.00077775	-1.4602	-0.00084085	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0719	2	11477	11477;11491		36.447	6.129	1	4935500	+		70534	20891	49451	49530	76857;76858	76857					0.10422436476960684
RTLAHLAVRN	10	Unmodified	_RTLAHLAVRN_					0	0	0			REV__ENSG00000090971|ENST00000205194|NAT14	REV__ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8431396484375	2	575.843813	1149.67307	-1.2575	-0.00072414	-0.21498	-0.00012379	-1.4725	-0.00084794	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0719	1	11204	11204		36.447	2.5251	1	6251500	+		70535	20891	49451	49530	76859	76859					0.10422436476960684
RTLAHLAVRN	10	Unmodified	_RTLAHLAVRN_					0	0	0			REV__ENSG00000090971|ENST00000205194|NAT14	REV__ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.843017578125	2	575.843813	1149.67307	0.019504	1.1231E-05	-1.5007	-0.00086416	-1.4812	-0.00085293	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0719	1	11202	11202		36.447	0	1	5880000	+		70536	20891	49451	49530	76860	76860					0.10422436476960684
RTLALPLVLP	10	Unmodified	_RTLALPLVLP_					0	0	0		ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8402709960938	2	546.860609	1091.70667	-0.54403	-0.00029751	0.11537	6.3092E-05	-0.42866	-0.00023442	546.861559489263	99.576	0.42768	99.586	99.357	99.785	0.010231					14	9	2	0	0	0	0.03519	1	12694	12694		37.159	21.517	1	82143			70537	12878	49452	49531	76861	76861					0.16448045196170824
RTLALPLVLP	10	Unmodified	_RTLALPLVLP_					0	0	0		ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	ENST00000368020.5_1_1:161009295-161009403:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.8402709960938	2	546.860609	1091.70667	-0.42118	-0.00023033	-0.43615	-0.00023851	-0.85733	-0.00046884	546.8598554735486	99.76	0.20776	99.755	99.608	99.816	-0.0050888					6	4	2	0	0	0	0.03519	1	12663	12663		29.15	8.2026	1	50308			70538	12878	49452	49531	76862	76862					0.16448045196170824
RTLANAAQL	9	Unmodified	_RTLANAAQL_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2772521972656	2	479.277441	956.540328	-0.16754	-8.0297E-05	0.17169	8.2287E-05	0.0041534	1.9906E-06	479.27744210358486	21.383	0.67306	21.293	21.01	21.683	-0.090092					30	13	3	0	0	0	0.29158	1	646	646		76.774	2.5191	1	560020	+		70539	25558	49453	49532	76863	76863					0.06031992020314192
RTLDLVKLQ	9	Unmodified	_RTLDLVKLQ_					0	0	0			REV__CON__Q2KIF2	REV__CON__Q2KIF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3370361328125	2	543.337498	1084.66044	-0.98427	-0.00053479	0.18444	0.00010021	-0.79983	-0.00043458	543.3375877430747	48.614	1.6346	48.614	48.243	49.878	0					101	45	5	0	0	0	0.041068	1	4949	4949		132.76	6.9438	1	9406200	+	+	70540	19574	49454	49533	76864	76864					0.12149980294088891
RTLDSLMQF	9	Unmodified	_RTLDSLMQF_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000491272.1_1_17:40467765-40469062:-|nuORF;ENST00000462269.1_1_17:40467765-40469390:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.7845458984375	2	555.784241	1109.55393	-0.80297	-0.00044628	1.0644	0.00059159	0.26146	0.00014531	555.7844797860661	69.26	1.4183	68.998	68.747	70.165	-0.26165					88	33	4	0	0	0	0.15388	2	8034	8021;8034		98.582	35.604	1	1682800			70541	7843	49455	49534	76865;76866	76866					0.0035348173726106324
RTLDSLMQF	9	Unmodified	_RTLDSLMQF_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000491272.1_1_17:40467765-40469062:-|nuORF;ENST00000462269.1_1_17:40467765-40469390:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7838745117188	2	555.784241	1109.55393	0.20287	0.00011275	-0.37844	-0.00021033	-0.17557	-9.7582E-05	555.7838345383368	69.194	0.99207	68.951	68.707	69.699	-0.24277					58	23	3	0	0	0	0.24031	2	8021	8021;8032		83.647	26.926	1	1852800			70542	7843	49455	49534	76867;76868	76867					0.0035348173726106324
RTLDSLMQF	9	Unmodified	_RTLDSLMQF_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000491272.1_1_17:40467765-40469062:-|nuORF;ENST00000462269.1_1_17:40467765-40469390:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7843627929688	2	555.784241	1109.55393	-0.34188	-0.00019001	0.093729	5.2093E-05	-0.24815	-0.00013792	555.7841160956509	69.203	0.9502	68.981	68.606	69.556	-0.22245					57	22	3	0	0	0	0.10464	3	8005	8005;8017;8030		109.48	38.183	1	1675100			70543	7843	49455	49534	76869;76870;76871	76869					0.0035348173726106324
RTLFLWKIEVH	11	Unmodified	_RTLFLWKIEVH_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2832336425781	3	481.281995	1440.82415	-0.010732	-5.1652E-06	3.1733	0.0015273	3.1626	0.0015221	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.0811	1	12926	12926		16.53	0.6092	1	1064100			70544	5192	49456	49535	76872	76872					0.12137578064948684
RTLGAKKL	8	Unmodified	_RTLGAKKL_					0	0	0		ENST00000475378.5_1_1:45097966-45116444:+|nuORF;nc|ENSG00000187147|Q5VTB9-3|RNF220;ENSG00000187147|ENST00000361799|RNF220	ENST00000475378.5_1_1:45097966-45116444:+|nuORF	ENST00000475378.5_1_1:45097966-45116444:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.2797546386719	2	443.795269	885.575986	0.77547	0.00034415	-0.8231	-0.00036529	-0.047627	-2.1137E-05	443.793801137296	54.947	0.18138	54.741	54.685	54.866	-0.20613					6	4	2	0	0	0	0.027866	1	5859	5859		45.952	0	1	64141			70545	9611	49457	49536	76873	76873					0.12862074267991375
RTLGEIPTY	9	Unmodified	_RTLGEIPTY_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2853393554688	2	525.284931	1048.55531	-0.037682	-1.9794E-05	0.16246	8.5339E-05	0.12478	6.5545E-05	525.2849520289766	53.008	0.93723	52.881	52.391	53.329	-0.12705					46	23	3	0	0	0	0.19099	2	5533	5522;5533		90.37	21.583	1	1699500			70546	8561	49458	49537	76874;76875	76875					0.03297439097673305
RTLGEIPTY	9	Unmodified	_RTLGEIPTY_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2872314453125	2	525.284931	1048.55531	0.078307	4.1134E-05	-0.34328	-0.00018032	-0.26497	-0.00013918	525.2846036957188	53.079	0.87865	52.889	52.551	53.429	-0.18981					54	22	4	0	0	0	0.29158	1	5527	5527		76.774	10.971	1	2390000			70547	8561	49458	49537	76876	76876					0.03297439097673305
RTLGEIPTY	9	Unmodified	_RTLGEIPTY_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.284931	1048.55531	0.096627	5.0757E-05	4.187	0.0021993	4.2836	0.0022501	525.7873563122993	52.839	0.69342	52.931	52.675	53.368	0.092922	0.027687	0.0045116	NaN	90.37	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454720			70548	8561	49458	49537							0.03297439097673305
RTLGRSVP	8	Unmodified	_RTLGRSVP_					0	0	0			REV__ENST00000412935.1_1_7:108209003-108210073:-|nuORF	REV__ENST00000412935.1_1_7:108209003-108210073:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.26654052734375	2	443.266876	884.519199	0.094753	4.2001E-05	0.13538	6.0008E-05	0.23013	0.00010201	443.2668579656422	85.931	1.078	85.736	85.386	86.464	-0.19507					68	24	4	0	0	0	1.0516	1	10396	10396		29.15	1.2673	1	1006800	+		70549	32012	49459	49538	76877	76877					0.07232026711460549
RTLIAAILY	9	Unmodified	_RTLIAAILY_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.3232421875	2	517.32386	1032.63317	-0.23856	-0.00012341	-0.84445	-0.00043686	-1.083	-0.00056027	517.3230369031786	73.263	0.87087	72.998	72.385	73.256	-0.26479					38	20	3	0	0	0	0.87448	1	8613	8613		34.173	3.8548	1	1125200			70550	2370	49460	49539	76878	76878					0.11815496753729349
RTLIEGAKGF	10	Unmodified	_RTLIEGAKGF_					0	0	0			REV__nc|ENSG00000005471|P21439-3|ABCB4	REV__nc|ENSG00000005471|P21439-3|ABCB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.810791015625	2	546.314023	1090.61349	-0.16059	-8.7731E-05	-3.1524	-0.0017222	-3.313	-0.0018099	546.312199904745	70.172	0.86198	69.922	69.358	70.22	-0.25063					46	20	4	0	0	0	0.03519	1	8163	8163		37.812	12.237	1	2026600	+		70551	19807	49461	49540	76879	76879					0.07181120742939129
RTLKFSRSLN	10	Unmodified	_RTLKFSRSLN_					0	0	0		ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3560791015625	2	611.356754	1220.69895	-1.352	-0.00082658	0.3803	0.0002325	-0.97175	-0.00059408	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.0909	1	12016	12016		33.922	3.6039	1	11699000			70552	7410	49462	49541	76880	76880					0.09743285928607293
RTLKFSRSLN	10	Unmodified	_RTLKFSRSLN_					0	0	0		ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3561401367188	2	611.356754	1220.69895	0.14541	8.89E-05	-1.0358	-0.00063326	-0.89041	-0.00054436	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.1314	2	11745	11745;11769		27.047	3.5246	1	13233000			70553	7410	49462	49541	76881;76882	76881					0.09743285928607293
RTLKRNGISPP	11	Unmodified	_RTLKRNGISPP_					0	0	0		ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.869384765625	2	619.870028	1237.7255	-0.20812	-0.00012901	-0.94274	-0.00058438	-1.1509	-0.00071338	619.869248531336	92.303	2.2444	92.294	91.12	93.364	-0.0082855					173	53	4	0	0	0	1.0344	1	11741	11741		29.17	0	1	1362300			70554	14109	49463	49542	76883	76883					0.11614974819940471
RTLKRNGISPP	11	Unmodified	_RTLKRNGISPP_					0	0	0		ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8690795898438	2	619.870028	1237.7255	-0.98359	-0.0006097	-0.34317	-0.00021272	-1.3268	-0.00082242	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	1.0392	1	11485	11485		28.081	1.3886	1	1625000			70555	14109	49463	49542	76884	76884					0.11614974819940471
RTLKSRLW	8	Unmodified	_RTLKSRLW_					0	0	0		ENST00000507650.1_1_12:54431700-54441637:+|nuORF	ENST00000507650.1_1_12:54431700-54441637:+|nuORF	ENST00000507650.1_1_12:54431700-54441637:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3192138671875	2	530.324725	1058.6349	-0.028322	-1.502E-05	3.0113	0.0015969	2.9829	0.0015819	530.326352090319	93.506	0.95374	93.362	92.659	93.612	-0.1441					28	21	2	0	0	0	0.027866	1	11512	11512		17.365	0	1	182850			70556	15767	49464	49543	76885	76885					0.10792550562314318
RTLLAKNN	8	Unmodified	_RTLLAKNN_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2802429199219	2	465.279983	928.545414	1.4489	0.00067412	-1.362	-0.00063371	0.086852	4.041E-05	465.2792483869207	87.826	1.4105	87.845	87.515	88.925	0.018555					84	33	4	0	0	0	1.0574	1	11018	11018		27.882	1.0861	1	1753000			70557	7076	49465	49544	76886	76886					0.07828295882939074
RTLLHWTARR	10	Unmodified	_RTLLHWTARR_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2557067871094	3	437.258184	1308.75272	0.70758	0.0003094	-2.6209	-0.001146	-1.9133	-0.0008366	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.1051	1	12138	12138		32.034	5.2844	1	1350500			70558	6486	49466	49545	76887	76887					0.11069503150952187
RTLLLPFSA	9	Unmodified	_RTLLLPFSA_					0	0	0		ENST00000421779.2_1_2:220033802-220034706:-|nuORF	ENST00000421779.2_1_2:220033802-220034706:-|nuORF	ENST00000421779.2_1_2:220033802-220034706:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.30615234375	2	509.30821	1016.60187	-0.42572	-0.00021683	-3.8904	-0.0019814	-4.3162	-0.0021983	509.30608017634603	91.974	1.4257	91.851	91.414	92.84	-0.12241					104	33	5	0	0	0	0.87448	1	11335	11335		34.173	2.2177	1	3160300			70559	13999	49467	49546	76888	76888					0.09422923719603205
RTLLRPSD	8	Unmodified	_RTLLRPSD_					0	0	0		nc|ENSG00000163576|Q8N7U6-3|EFHB;ENSG00000163576|ENST00000295824|EFHB	nc|ENSG00000163576|Q8N7U6-3|EFHB	nc|ENSG00000163576|Q8N7U6-3|EFHB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2773132324219	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	1.0106	1	10293	10293		35.618	4.0885	1	7407200			70560	7109	49468	49547	76889	76889					0.06031992020314192
RTLLYAHGPP	10	Unmodified	_RTLLYAHGPP_					0	0	0		ENSG00000174989|ENST00000652555|FBXW8;nc|ENSG00000174989|Q8N3Y1-2|FBXW8	ENSG00000174989|ENST00000652555|FBXW8	ENSG00000174989|ENST00000652555|FBXW8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.3145141601562	2	562.81419	1123.61383	-0.64893	-0.00036523	3.5518	0.001999	2.9029	0.0016338	562.8161566027911	21.703	1.0061	21.613	21.109	22.115	-0.090094					45	20	4	0	0	0	0.03519	1	680	680		37.812	13.292	1	622850			70561	8518	49469	49548	76890	76890					0.05696540462804478
RTLMLKGLR	9	Unmodified	_RTLMLKGLR_					0	0	0		nc|ENSG00000116783|Q59H18-3|TNNI3K;ENSG00000116783|ENST00000326637|TNNI3K;nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K	nc|ENSG00000116783|Q59H18-3|TNNI3K	nc|ENSG00000116783|Q59H18-3|TNNI3K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3212890625	2	544.342061	1086.66957	1.4758	0.00080333	-4.3466	-0.002366	-2.8708	-0.0015627	544.339465897182	24.399	0.30236	24.219	24.072	24.374	-0.18089					10	6	2	0	0	0	0.024541	1	1029	1029		26.693	3.6504	1	54558			70562	3576	49470	49549	76891	76891					0.12970050378771703
RTLNGGGFRIS	11	Unmodified	_RTLNGGGFRIS_					0	0	0			REV__ENST00000475645.1_1_6:106634207-106634378:-|nuORF	REV__ENST00000475645.1_1_6:106634207-106634378:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.3430786132812	2	589.325454	1176.63635	-1.3755	-0.00081059	0.30775	0.00018136	-1.0677	-0.00062923	589.3259852078945	93.06	0.46416	93.056	92.862	93.326	-0.0041962					17	10	3	0	0	0	0.02475	1	11769	11769		42.864	14.783	1	109040	+		70563	33297	49471	49550	76892	76892					0.05510139860439267
RTLNKSLSI	9	Unmodified	_RTLNKSLSI_					0	0	0			REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.3138427734375	2	516.314023	1030.61349	-0.26252	-0.00013554	-0.2214	-0.00011431	-0.48392	-0.00024986	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	0.72494	1	12506	12506		44.377	3.599	1	33267000	+		70564	29461	49472	49551	76893	76893					0.0994112074295117
RTLNKSLSI	9	Unmodified	_RTLNKSLSI_					0	0	0			REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.3139038085938	2	516.314023	1030.61349	0.22709	0.00011725	-0.71687	-0.00037013	-0.48978	-0.00025288	516.313585376337	97.954	2.7122	97.952	97.189	99.901	-0.0020828					210	62	6	0	0	0	0.64897	1	12459	12459		49.536	14.384	1	31857000	+		70565	29461	49472	49551	76894	76894					0.0994112074295117
RTLNKSLSI	9	Unmodified	_RTLNKSLSI_					0	0	0			REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	REV__ENST00000244040.3_1_20:56937129-56937339:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.313720703125	2	516.314023	1030.61349	-0.060536	-3.1256E-05	-1.0547	-0.00054456	-1.1152	-0.00057582	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	0.91321	2	12114	12114;12134		31.53	3.596	1	29455000	+		70566	29461	49472	49551	76895;76896	76895					0.0994112074295117
RTLNPAAR	8	Unmodified	_RTLNPAAR_					0	0	0		ENST00000373674.3_1_6:36922354-36922558:+|nuORF	ENST00000373674.3_1_6:36922354-36922558:+|nuORF	ENST00000373674.3_1_6:36922354-36922558:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2848205566406	2	449.764501	897.514448	-0.38057	-0.00017117	-1.7272	-0.00077681	-2.1077	-0.00094798	449.76427798065856	34.996	0.55545	34.784	34.56	35.115	-0.21246					17	13	2	0	0	0	0.027866	1	2590	2590		60.972	0	1	44941			70567	13084	49473	49552	76897	76897					0.06159142568697007
RTLPVLLLY	9	Unmodified	_RTLPVLLLY_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.346923828125	2	544.347335	1086.68012	-0.19367	-0.00010542	0.058283	3.1726E-05	-0.13538	-7.3695E-05	544.3472627637021	78.747	1.3535	78.492	78.127	79.48	-0.25471					71	31	4	0	0	0	0.80003	2	9376	9376;9411		39.253	5.8567	1	3048000			70568	186;187	49474	49553	76898;76899	76898					0.1402435630486707
RTLPVLLLY	9	Unmodified	_RTLPVLLLY_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.34716796875	2	544.347335	1086.68012	0.035767	1.947E-05	-0.17223	-9.375E-05	-0.13646	-7.428E-05	544.3471106564123	78.67	1.2238	78.439	78.091	79.315	-0.23141					76	28	5	0	0	0	0.72494	1	9393	9393		44.377	5.571	1	2889500			70569	186;187	49474	49553	76900	76900					0.1402435630486707
RTLPVLLLY	9	Unmodified	_RTLPVLLLY_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3466796875	2	544.347335	1086.68012	-0.50632	-0.00027562	0.23061	0.00012553	-0.27571	-0.00015008	544.3473901389589	78.575	1.272	78.419	78.043	79.315	-0.15591					69	29	4	0	0	0	0.80003	2	9366	9366;9393		39.253	0.44669	1	2709600			70570	186;187	49474	49553	76901;76902	76901					0.1402435630486707
RTLQKKIE	8	Unmodified	_RTLQKKIE_					0	0	0		C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	C5|p.N1265Ifs*3|1|0.05|ENSG00000106804|chr9:120976769-120976770|AT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.28778076171875	2	508.316566	1014.61858	-0.71133	-0.00036158	0.18687	9.4989E-05	-0.52446	-0.00026659	508.3166028435403	61.825	0.21154	61.888	61.771	61.983	0.062767					7	5	2	0	0	0	0.027866	1	7084	7084		27.882	3.6795	1	100470			70571	198	49475	49554	76903	76903					0.1118542460557137
RTLQLFDPR	9	Unmodified	_RTLQLFDPR_					0	0	0			REV__ENST00000535831.5_1_12:123319323-123319551:+|nuORF	REV__ENST00000535831.5_1_12:123319323-123319551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.3212280273438	2	573.324922	1144.63529	0.17561	0.00010068	-1.7445	-0.0010002	-1.5689	-0.00089949	573.32394098064	107.15	0.61134	107.15	106.86	107.47	0					28	15	2	0	0	0	0.87448	1	13757	13757		34.173	2.6427	1	179510	+		70572	34679	49476	49555	76904	76904					0.06875925491522139
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8150024414062	2	575.814387	1149.61422	-0.1695	-9.7601E-05	-0.49644	-0.00028586	-0.66594	-0.00038346	575.8140848033166	47.484	0.80964	47.387	47.008	47.818	-0.096653					72	21	5	0	0	0	0.53979	3	4628	4628;4649;4661		56.721	10.749	1	6822000			70573	6905	49477	49556	76905;76906;76907	76905					0.04539915391978866
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8141479492188	2	575.814387	1149.61422	-0.54648	-0.00031467	-0.062619	-3.6057E-05	-0.6091	-0.00035073	575.8143293593397	47.823	0.77308	47.547	47.231	48.004	-0.27598					66	20	4	0	0	0	0.45795	2	4717	4704;4717		62.107	14.192	1	8177800			70574	6905	49477	49556	76908;76909	76909					0.04539915391978866
RTLRDIETF	9	Unmodified	_RTLRDIETF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7481648-7481801:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8135375976562	2	575.814387	1149.61422	-0.14217	-8.1864E-05	-0.54049	-0.00031122	-0.68266	-0.00039308	575.8140611733836	47.606	0.89416	47.419	47.084	47.978	-0.18684					74	23	5	0	0	0	0.70156	1	4642	4642		45.972	1.5951	1	8164400			70575	6905	49477	49556	76910	76910					0.04539915391978866
RTLRQRSRRPK	11	Unmodified	_RTLRQRSRRPK_					0	0	0		ENSG00000196421|ENST00000636176|C20orf204	ENSG00000196421|ENST00000636176|C20orf204	ENSG00000196421|ENST00000636176|C20orf204	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.3028259277344	3	485.302675	1452.8862	3.3473	0.0016244	-4.0085	-0.0019454	-0.66127	-0.00032091	485.3005870874961	17.424	0.83739	17.424	17.201	18.038	0					37	16	3	0	0	0	1.1092	1	159	159		8.7993	2.1397	1	113080			70576	9871	49478	49557	76911	76911					0.17786742256657817
RTLVFVDLL	9	Unmodified	_RTLVFVDLL_					0	0	0			REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3270263671875	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.91321	1	12669	12669		31.53	2.3803	1	22988000	+		70577	21073	49479	49558	76912	76912					0.10939479408125408
RTLVTIVK	8	Unmodified	_RTLVTIVK_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7640380859375	2	465.310752	928.606951	-0.81911	-0.00038114	0.5613	0.00026118	-0.2578	-0.00011996	465.3108096263167	21.887	0.48158	21.685	21.468	21.95	-0.20255					17	9	3	0	0	0	0.027866	1	685	685		15.642	0	1	100660	+		70578	25871	49480	49559	76913	76913					0.13979227582240128
RTLWIKTV	8	Unmodified	_RTLWIKTV_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.78143310546875	2	508.816202	1015.61785	-1.0444	-0.00053143	-1.1427	-0.00058143	-2.1871	-0.0011129	508.8156132618712	43.942	0.39006	43.798	43.604	43.994	-0.14471					27	10	3	0	0	0	0.027866	1	4138	4138		35.618	12.576	1	460360			70579	6437	49481	49560	76914	76914					0.11066629956519591
RTMEIESTF	9	Unmodified	_RTMEIESTF_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.26611328125	2	557.265881	1112.51721	-0.27699	-0.00015436	0.24245	0.00013511	-0.034549	-1.9253E-05	557.2659189771771	52.683	0.7924	52.556	52.273	53.066	-0.12705					42	19	3	0	0	0	0.10174	1	5491	5491		110.12	8.5192	1	1324100			70580	18202	49482	49561	76915	76915					-0.03454814879319201
RTMEIESTF	9	Unmodified	_RTMEIESTF_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2659301757812	2	557.265881	1112.51721	0.55853	0.00031125	-0.62109	-0.00034611	-0.062568	-3.4867E-05	557.2653993666145	52.92	0.78289	52.662	52.403	53.186	-0.25838					41	19	3	0	0	0	0.086035	2	5507	5507;5520		115.49	8.4865	1	1404800			70581	18202	49482	49561	76916;76917	76916					-0.03454814879319201
RTMEIESTF	9	Unmodified	_RTMEIESTF_					0	0	0		nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3	nc|ENSG00000117419|O43414-2|ERI3	nc|ENSG00000117419|O43414-2|ERI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.2651977539062	2	557.265881	1112.51721	-0.21466	-0.00011962	0.064885	3.6158E-05	-0.14978	-8.3465E-05	557.2658121071955	52.794	0.90626	52.604	52.227	53.133	-0.18982					45	22	3	0	0	0	0.067814	1	5491	5491		122.18	17.429	1	1492600			70582	18202	49482	49561	76918	76918					-0.03454814879319201
RTMELLTQNW	10	Unmodified	_RTMELLTQNW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197125191-197128490|476|17.13|0.76|4.5|-|1|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	646.328857421875	2	646.326805	1290.63906	-2.4289	-0.0015699	2.2149	0.0014315	-0.21407	-0.00013836	646.3279957716177	66.633	0.4299	66.385	66.101	66.531	-0.24839					26	12	3	0	0	0	0.022744	1	7660	7660		160.82	91.194	1	2545400			70583	1335	49483	49562	76919	76919					0.005362272030652093
RTMELLTQNW	10	Unmodified	_RTMELLTQNW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197125191-197128490|476|17.13|0.76|4.5|-|1|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	646.326805	1290.63906	-0.3012	-0.00019468	0.039959	2.5827E-05	-0.26124	-0.00016885	646.3267520271038	66.608	0.47277	66.385	66.066	66.539	-0.22374	0.0037579	-0.00095144	NaN	160.82	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2072000			70584	1335	49483	49562							0.005362272030652093
RTMELLTQNW	10	Unmodified	_RTMELLTQNW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197125191-197128490|476|17.13|0.76|4.5|-|1|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	646.326805	1290.63906	-0.98311	-0.00063541	0.75683	0.00048916	-0.22628	-0.00014625	646.3271937246483	66.619	0.4567	66.374	66.088	66.545	-0.24517	-0.0073676	-2.4771E-05	NaN	160.82	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1816800			70585	1335	49483	49562							0.005362272030652093
RTMPVEQVF	9	Unmodified	_RTMPVEQVF_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.7862548828125	2	553.786784	1105.55902	-0.94213	-0.00052174	0.4704	0.0002605	-0.47173	-0.00026124	553.7870057197587	55.805	1.443	55.648	55.244	56.687	-0.15656					89	37	4	0	0	0	0.29609	5	6006	5994;6006;6018;6042;6055		76.17	24.977	1	13212000			70586	5598	49484	49563	76920;76921;76922;76923;76924	76921					0.010457855998765808
RTMPVEQVF	9	Unmodified	_RTMPVEQVF_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7864990234375	2	553.786784	1105.55902	-0.018893	-1.0463E-05	-0.45259	-0.00025064	-0.47148	-0.0002611	553.7864617835799	55.903	1.1313	55.687	55.336	56.468	-0.21607					79	29	4	0	0	0	0.29609	4	6029	6006;6017;6029;6055		76.17	21.393	1	13590000			70587	5598	49484	49563	76925;76926;76927;76928	76927					0.010457855998765808
RTMPVEQVF	9	Unmodified	_RTMPVEQVF_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.786376953125	2	553.786784	1105.55902	-1.3128	-0.00072703	0.61095	0.00033833	-0.70188	-0.00038869	553.7870263919933	55.908	1.2554	55.693	55.336	56.591	-0.21551					82	32	4	0	0	0	0.35556	5	5994	5994;6005;6017;6030;6043		68.846	21.189	1	12201000			70588	5598	49484	49563	76929;76930;76931;76932;76933	76929					0.010457855998765808
RTMPVEQVF	9	Oxidation (M)	_RTM(Oxidation (M))PVEQVF_		RTM(1)PVEQVF		RTM(53)PVEQVF	0	0	1		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.7845458984375	2	561.784241	1121.55393	0.12857	7.2226E-05	-3.3429	-0.001878	-3.2143	-0.0018058	561.782379167508	47.226	2.227	46.957	46.036	48.263	-0.26939					168	60	5	0	0	0	0.59498	1	4488	4488		53.089	12.516	1	25599000			70589	5598	49484	49564	76934	76934		239			-0.001985182627549875
RTMPVEQVF	9	Oxidation (M)	_RTM(Oxidation (M))PVEQVF_		RTM(1)PVEQVF		RTM(76)PVEQVF	0	0	1		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.7839965820312	2	561.784241	1121.55393	-0.49648	-0.00027891	-2.7778	-0.0015605	-3.2743	-0.0018395	561.7826928146108	47.026	2.3886	46.832	45.938	48.327	-0.19387					184	65	5	0	0	0	0.29609	1	4482	4482		76.17	16.051	1	24966000			70590	5598	49484	49564	76935	76935		239			-0.001985182627549875
RTMRAAQP	8	Unmodified	_RTMRAAQP_					0	0	0			REV__ENSG00000145337|ENST00000273968|PYURF	REV__ENSG00000145337|ENST00000273968|PYURF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2615051269531	2	465.750536	929.486519	-0.18763	-8.7391E-05	-0.21003	-9.7821E-05	-0.39766	-0.00018521	465.75048655670884	22.711	0.46267	22.636	22.458	22.921	-0.075296					12	9	2	0	0	0	0.027866	1	795	795		29.15	7.4472	1	45680	+		70591	24399	49485	49565	76936	76936					0.01895496316956269
RTNAIKQTF	9	Unmodified	_RTNAIKQTF_					0	0	0		ENST00000479942.5_1_2:234198871-234202993:+|nuORF;nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1	ENST00000479942.5_1_2:234198871-234202993:+|nuORF	ENST00000479942.5_1_2:234198871-234202993:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.8037109375	2	539.803823	1077.59309	-0.73976	-0.00039932	-0.24039	-0.00012976	-0.98015	-0.00052909	539.803949775619	28.929	0.82233	28.76	28.337	29.16	-0.16897					48	16	5	0	0	0	0.35646	1	1729	1729		68.787	0	1	749600			70592	1803	49486	49566	76937	76937					0.057399500831252226
RTPAQVPSV	9	Unmodified	_RTPAQVPSV_					0	0	0		nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000285975|A6NNJ1|FAM90A9;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000285975|A6NKC0|FAM90A7	nc|ENSG00000233295|A6NIJ5|FAM90A20	nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.77398681640625	2	477.771991	953.529429	0.79396	0.00037933	3.5334	0.0016882	4.3274	0.0020675	477.7736015027622	69.46	1.0599	69.167	68.86	69.92	-0.29292					64	26	4	0	0	0	0.16468	1	8322	8322		96.19	5.8206	1	7163800			70593	18749	49487	49567	76938	76938					0.05080589646047429
RTPEPKKIK	9	Unmodified	_RTPEPKKIK_					0	0	0		nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.8443603515625	2	548.84549	1095.67643	-0.19716	-0.00010821	-0.54258	-0.00029779	-0.73973	-0.000406	548.8450873540853	45.605	1.8545	45.352	44.354	46.208	-0.25252					138	49	4	0	0	0	0.03849	1	4331	4331		134.81	3.7794	1	5389900			70594	4693	49488	49568	76939	76939					0.1324168653097786
RTPEVPGLQTE	11	Unmodified	_RTPEVPGLQTE_					0	0	0		SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|26|3|sense	SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|26|3|sense	SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|26|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.55010986328125	3	409.550698	1225.63027	0.59017	0.0002417	-2.6392	-0.0010809	-2.049	-0.00083918	409.5495738657949	53.353	0.6869	53.095	52.683	53.37	-0.25838					68	17	5	0	0	0	1.0013	1	5591	5591		36.528	0	1	4505800			70595	37997	49489	49569	76940	76940					0.02647576838239729
RTPGGRAVR	9	Unmodified	_RTPGGRAVR_					0	0	0		PARD3|p.R11Pfs*52|1|0.33|ENSG00000148498|chr10:34814964-34814965|-/G|frameshift_variant	PARD3|p.R11Pfs*52|1|0.33|ENSG00000148498|chr10:34814964-34814965|-/G|frameshift_variant	PARD3|p.R11Pfs*52|1|0.33|ENSG00000148498|chr10:34814964-34814965|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.28668212890625	2	485.288674	968.562795	3.2593	0.0015817	-4.0646	-0.0019725	-0.80529	-0.0003908	485.28684316422704	17.869	2.0137	17.869	17.449	19.463	0					85	40	5	0	0	0	0.94779	1	261	261		29.17	8.2231	1	6870700			70596	18941	49490	49570	76941	76941					0.07725636208601827
RTPGSYRLATL	11	Unmodified	_RTPGSYRLATL_					0	0	0			REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF	REV__ENST00000513468.5_1_5:54516196-54522465:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	617.8491821289062	2	617.848761	1233.68297	0.30236	0.00018681	1.921	0.0011869	2.2234	0.0013737	617.8499331833038	98.61	0.70882	98.473	98.147	98.855	-0.13625					34	15	3	0	0	0	1.0075	1	12215	12215		35.152	1.2304	1	165560	+		70597	34157	49491	49571	76942	76942					0.07547579691708961
RTPLATSSN	9	Unmodified	_RTPLATSSN_					0	0	0			REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.27166748046875	2	473.751256	945.487959	0.99054	0.00046927	3.7036	0.0017546	4.6942	0.0022239	473.75271751550366	41.071	0.57116	40.947	40.653	41.224	-0.12317					27	15	3	0	0	0	0.024319	1	3683	3683		39.253	0	1	223670	+		70598	35819	49492	49572	76943	76943					0.013034088867129867
RTPLATSSN	9	Unmodified	_RTPLATSSN_					0	0	0			REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.751256	945.487959	-0.11496	-5.4462E-05	7.0489	0.0033394	6.934	0.003285	473.7546192151342	41.038	0.69834	40.903	40.635	41.334	-0.13554	-0.060087	0.0019893	NaN	39.253	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149170	+		70599	35819	49492	49572							0.013034088867129867
RTPLATSSN	9	Unmodified	_RTPLATSSN_					0	0	0			REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	REV__ENST00000598463.5_1_19:51301846-51301969:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.751256	945.487959	-0.1648	-7.8072E-05	5.3728	0.0025454	5.208	0.0024673	473.75344007152864	41.221	0.35343	40.993	40.767	41.121	-0.2278	0.030371	0.00040111	NaN	39.253	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131320	+		70600	35819	49492	49572							0.013034088867129867
RTPLVRSGE	9	Unmodified	_RTPLVRSGE_					0	0	0			REV__ENST00000291672.5_1_21:47588356-47602573:-|nuORF	REV__ENST00000291672.5_1_21:47588356-47602573:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7353210449219	2	507.788173	1013.56179	-1.1217	-0.00056958	-3.6617	-0.0018594	-4.7834	-0.002429	508.2888944801915	40.368	0.34534	40.138	39.851	40.197	-0.23021					9	8	2	0	0	0	0.024263	1	3426	3426		60.972	11.53	1	74473	+		70601	29945	49493	49573	76944	76944					0.05555377049051913
RTPSLPKIM	9	Unmodified	_RTPSLPKIM_					0	0	0		chr8:124553686-124555742|186|13.44|0.61|4.46|-|0|None,MTSS1|1	chr8:124553686-124555742|186|13.44|0.61|4.46|-|0|None,MTSS1|1	chr8:124553686-124555742|186|13.44|0.61|4.46|-|0|None,MTSS1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7911987304688	2	521.807519	1041.60049	-0.08552	-4.4625E-05	-0.53282	-0.00027803	-0.61834	-0.00032265	522.3083428201625	21.148	0.53993	21.22	20.959	21.499	0.071487					12	10	2	0	0	0	0.024021	1	592	592		68.787	12.066	1	21449			70602	430	49494	49574	76945	76945					0.0813496635919364
RTPSPVELD	9	Unmodified	_RTPSPVELD_					0	0	0			REV__ENSG00000197768|ENST00000412566|STPG3	REV__ENSG00000197768|ENST00000412566|STPG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.33135986328125	2	507.266739	1012.51892	-1.0339	-0.00052444	-1.4167	-0.00071867	-2.4506	-0.0012431	507.26614568517283	37.651	0.20153	37.579	37.479	37.681	-0.072243					11	5	3	0	0	0	0.024495	1	3061	3061		42.396	11.892	1	129230	+		70603	28346	49495	49575	76946	76946					0.013165622009523759
RTQCMMERMMR	11	Unmodified	_RTQCMMERMMR_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.57952880859375	3	491.5519	1471.63387	2.1372	0.0010505	4.4206	0.002173	6.5578	0.0032235	491.5539574201434	19.137	0.54398	18.903	18.682	19.226	-0.23345					14	10	2	0	0	0	0.024746	1	393	393		15.921	0	1	21242			70604	4929	49496	49576	76947	76947					-0.08308182518749163
RTQGEGDPV	9	Unmodified	_RTQGEGDPV_					0	0	0			REV__ENST00000538524.1_1_12:6755846-6756568:-|nuORF	REV__ENST00000538524.1_1_12:6755846-6756568:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7353515625	2	479.733063	957.451573	0.039716	1.9053E-05	3.988	0.0019132	4.0277	0.0019322	479.7349833778638	59.944	2.2815	59.744	59.356	61.638	-0.20016					157	60	4	0	0	0	0.42604	1	6900	6900		64.207	8.7031	1	52328000	+		70605	34716	49497	49577	76948	76948					-0.028854680099925645
RTQGLLQF	8	Unmodified	_RTQGLLQF_					0	0	0			REV__ENSG00000175206|ENST00000376480|NPPA	REV__ENSG00000175206|ENST00000376480|NPPA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7365417480469	2	481.774534	961.534515	5.5365	0.0026673	-1.7345	-0.00083566	3.8019	0.0018317	481.7739405183385	17.013	0.15791	16.763	16.723	16.881	-0.25049					5	3	2	0	0	0	0.027866	1	111	111		24.203	0	1	7213.3	+		70606	26928	49498	49578	76949	76949					0.05220893508658264
RTQKPNET	8	Unmodified	_RTQKPNET_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.77923583984375	2	487.256705	972.498858	2.2832	0.0011125	3.7091	0.0018073	5.9922	0.0029198	487.25871078295506	24.373	0.74269	24.192	23.804	24.547	-0.18089					23	16	2	0	0	0	0.027866	1	1061	1061		25.45	2.4077	1	33502			70607	2077;18120	49499	49579	76950	76950					0.011508112609931231
RTQLVNGF	8	Unmodified	_RTQLVNGF_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.28125	2	467.758884	933.503215	-0.04434	-2.074E-05	-0.12661	-5.9225E-05	-0.17095	-7.9965E-05	467.75881643600195	45.254	0.67691	45.001	44.748	45.425	-0.25252					30	18	2	0	0	0	0.027866	1	4307	4307		30.504	5.0535	1	293660	+		70608	21294	49500	49580	76951	76951					0.03380320474570908
RTQRKVWGPL	10	Unmodified	_RTQRKVWGPL_					0	0	0			REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|67|2|anti-sense	REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|67|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2145080566406	3	414.247285	1239.72002	0.10445	4.327E-05	-3.8821	-0.0016082	-3.7777	-0.0015649	414.24553722123505	23.985	0.85898	24.061	23.778	24.637	0.076241					31	18	3	0	0	0	0.03519	1	1007	1007		32.751	8.5187	1	86930	+		70609	36300	49501	49581	76952	76952					0.10975296028141202
RTQVEKRL	8	Unmodified	_RTQVEKRL_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.E608Rfs*7|1|0.18|ENSG00000117298|chr1:21227186-21227187|-/ATGGCCCACGACGACACCT|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.311279296875	2	515.311815	1028.60908	-0.10516	-5.4188E-05	-0.83854	-0.00043211	-0.94369	-0.0004863	515.3114395138941	20.054	1.0676	19.887	19.62	20.688	-0.16774					64	21	5	0	0	0	0.83003	1	485	485		56.721	7.2795	1	8123500			70610	680	49502	49582	76953	76953					0.09591656320048969
RTQVKEIR	8	Unmodified	_RTQVKEIR_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3116455078125	2	515.311815	1028.60908	-0.10516	-5.4188E-05	-0.83854	-0.00043211	-0.94369	-0.0004863	515.3114395138941	20.054	1.0676	19.887	19.62	20.688	-0.16774					64	21	5	0	0	0	0.38451	2	508	496;508		99.375	8.2596	1	8123500	+		70611	28638	49503	49583	76954;76955	76955					0.09591656320026232
RTQVKEIR	8	Unmodified	_RTQVKEIR_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.3115844726562	2	515.311815	1028.60908	0.44954	0.00023165	-1.3948	-0.00071877	-0.94528	-0.00048712	515.3111810356185	20.157	1.0323	19.934	19.68	20.712	-0.22344					57	20	5	0	0	0	0.28835	3	496	471;483;496		116.9	21.9	1	7077600	+		70612	28638	49503	49583	76956;76957;76958	76958					0.09591656320026232
RTRALPAL	8	Unmodified	_RTRALPAL_					0	0	0		ENST00000564176.5_1_16:31487914-31488894:+|nuORF	ENST00000564176.5_1_16:31487914-31488894:+|nuORF	ENST00000564176.5_1_16:31487914-31488894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.27423095703125	2	449.285069	896.555585	-0.18287	-8.2159E-05	-0.23414	-0.00010519	-0.417	-0.00018735	449.2849040888141	56.734	0.29997	56.832	56.581	56.881	0.097893					10	8	2	0	0	0	0.027866	1	6265	6265		133.47	0	1	114320			70613	16882	49504	49584	76959	76959					0.10316903608168104
RTRARTRV	8	Unmodified	_RTRARTRV_					0	0	0		KLF1|p.K274Rfs*23|1|0.14|ENSG00000105610|chr19:12885411-12885411|G/-|frameshift_variant	KLF1|p.K274Rfs*23|1|0.14|ENSG00000105610|chr19:12885411-12885411|G/-|frameshift_variant	KLF1|p.K274Rfs*23|1|0.14|ENSG00000105610|chr19:12885411-12885411|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3033752441406	2	508.315223	1014.61589	-0.61148	-0.00031082	0.71032	0.00036107	0.098842	5.0243E-05	508.31607338951204	26.104	0.24626	26.104	25.957	26.203	0					11	5	3	0	0	0	0.027866	1	1295	1295		66.429	0	1	506420			70614	17803	49505	49585	76960	76960					0.10917013991274871
RTRFKKII	8	Unmodified	_RTRFKKII_					0	0	0		DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant;nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.P2650Hfs*2|1|0.37|ENSG00000007174|chr17:11784422-11784422|C/-|frameshift_variant;DNAH9|p.T2328A|1|0.57|ENSG00000007174|chr17:11757679-11757679|A/G|missense_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.289794921875	2	531.350743	1060.68693	-0.64317	-0.00034175	4.153	0.0022067	3.5098	0.0018649	531.353353007796	55.355	0.12576	55.124	55.065	55.19	-0.23087					5	3	2	0	0	0	0.027866	1	5937	5937		26.796	14.589	1	96713			70615	653	49506	49586	76961	76961					0.15901713976086285
RTRGAGAIPL	10	Unmodified	_RTRGAGAIPL_					0	0	0			REV__ENST00000484394.5_1_X:152720163-152720565:-|nuORF	REV__ENST00000484394.5_1_X:152720163-152720565:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.3077697753906	2	506.306532	1010.59851	0.27139	0.00013741	2.4383	0.0012345	2.7097	0.0013719	506.3076533848368	87.645	1.0125	87.509	87.136	88.148	-0.13613					55	24	3	0	0	0	0.60198	1	10669	10669		76.774	4.8967	1	710350	+		70616	33538	49507	49587	76962	76962					0.09363673665598071
RTRGRAII	8	Unmodified	_RTRGRAII_					0	0	0		ENSG00000158156|ENST00000373884|XKR8	ENSG00000158156|ENST00000373884|XKR8	ENSG00000158156|ENST00000373884|XKR8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2944641113281	2	471.801417	941.588282	0.20578	9.7086E-05	2.9503	0.001392	3.1561	0.001489	471.80251318602325	32.286	0.43333	32.05	31.824	32.258	-0.23667					14	9	2	0	0	0	0.027866	1	2214	2214		40.573	1.7665	1	103440			70617	6648	49508	49588	76963	76963					0.1151511073102256
RTRGRAII	8	Unmodified	_RTRGRAII_					0	0	0		ENSG00000158156|ENST00000373884|XKR8	ENSG00000158156|ENST00000373884|XKR8	ENSG00000158156|ENST00000373884|XKR8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.801417	941.588282	-0.53152	-0.00025077	2.9146	0.0013751	2.3831	0.0011243	471.8026322781416	32.279	0.41891	32.121	31.904	32.323	-0.15772	0.035702	-1.1522E-05	NaN	40.573	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108070			70618	6648	49508	49588							0.1151511073102256
RTRHKKKVVR	10	Unmodified	_RTRHKKKVVR_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2713623046875	3	436.621345	1306.8422	-0.75066	-0.00032775	0.84882	0.00037061	0.098158	4.2858E-05	436.6216799597841	21.156	0.54252	20.943	20.723	21.266	-0.2128					25	10	3	0	0	0	0.03519	1	583	583		18.531	15.122	1	77027	+		70619	28517	49509	49589	76964	76964					0.2010575783033346
RTRKLKKKKNE	11	Unmodified	_RTRKLKKKKNE_					0	0	0		ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2608642578125	3	476.975565	1427.90486	-0.29328	-0.00013989	-0.98352	-0.00046911	-1.2768	-0.000609	477.30977100256695	28.147	0.12026	27.902	27.801	27.921	-0.24524					4	2	2	0	0	0	0.024873	1	1618	1618		14.086	2.1536	1	48347			70620	7030	49510	49590	76965	76965					0.2080285910785733
RTRLADLP	8	Unmodified	_RTRLADLP_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.791259765625	2	471.279983	940.545414	1.0383	0.00048933	-0.90404	-0.00042606	0.13425	6.3271E-05	471.2793701068956	19.597	0.64304	19.363	19.126	19.769	-0.23345					22	12	3	0	0	0	0.027866	1	397	397		26.693	0	1	104500	+		70621	27428	49511	49591	76966	76966					0.07276295882923023
RTRLEKLAFL	10	Unmodified	_RTRLEKLAFL_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.9033203125	3	416.25919	1245.75574	-0.093601	-3.8962E-05	0.10146	4.2234E-05	0.0078598	3.2717E-06	416.5935423470355	31.726	0.41456	31.541	31.321	31.736	-0.18503					14	9	2	0	0	0	0.03519	1	2149	2149		21.78	3.9473	1	61962			70622	10586	49512	49592	76967	76967					0.14269333485117386
RTRLRTSQ	8	Unmodified	_RTRLRTSQ_					0	0	0			REV__ENST00000532066.1_1_11:35745832-35827932:+|nuORF	REV__ENST00000532066.1_1_11:35745832-35827932:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.9339904785156	2	509.299239	1016.58392	0.60177	0.00030648	3.351	0.0017067	3.9528	0.0020131	509.30083942197024	18.835	0.49391	18.679	18.495	18.989	-0.15637					15	9	2	0	0	0	0.027866	1	361	361		21.96	3.6355	1	52528	+		70623	34573	49513	49593	76968	76968					0.07629601517464835
RTRNWVLQQKI	11	Unmodified	_RTRNWVLQQKI_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000487692.1_1_7:91726485-91729288:+|nuORF;ENST00000487258.5_1_7:91722364-91739470:+|nuORF	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28326416015625	3	481.284398	1440.83137	0.87515	0.00042119	-2.6172	-0.0012596	-1.7421	-0.00083843	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.0855	1	12518	12518		15.333	0.63944	1	1033300			70624	4266	49514	49594	76969	76969					0.12858310665387762
RTRPGPSL	8	Unmodified	_RTRPGPSL_					0	0	0			REV__LILRA4|p.L15P|1|0.38|ENSG00000239961|chr19:54338892-54338892|A/G|missense_variant	REV__LILRA4|p.L15P|1|0.38|ENSG00000239961|chr19:54338892-54338892|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.23541259765625	2	442.259051	882.503549	0.020005	8.8476E-06	2.3897	0.0010569	2.4097	0.0010657	442.26024001690706	33.754	0.23648	33.811	33.654	33.89	0.056572					6	5	2	0	0	0	0.027866	1	2416	2416		68.485	0	1	29407	+		70625	36312	49515	49595	76970	76970					0.05759740194423557
RTRQAASCACA	11	Unmodified	_RTRQAASCACA_					0	0	0		ENST00000546155.5_1_19:41116125-41119449:+|nuORF;ENST00000204005.13_1_19:41114149-41118026:+|nuORF	ENST00000546155.5_1_19:41116125-41119449:+|nuORF	ENST00000546155.5_1_19:41116125-41119449:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.267822265625	2	569.266224	1136.5179	-0.21662	-0.00012331	2.6029	0.0014818	2.3863	0.0013585	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	0.87596	1	965	965		53.089	0.15226	1	3402100			70626	11133	49516	49596	76971	76971					-0.04490298711266405
RTRRDAAL	8	Unmodified	_RTRRDAAL_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-4|MCM9	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.78167724609375	2	479.780682	957.546811	-1.1096	-0.00053236	2.8598	0.0013721	1.7502	0.00083973	479.7819375789904	44.015	0.59497	43.771	43.52	44.115	-0.2444					26	15	2	0	0	0	0.53523	1	4068	4068		82.305	0.064519	1	2341400			70627	3153	49517	49597	76972	76972					0.06633929971690122
RTRSAVSYPN	10	Unmodified	_RTRSAVSYPN_					0	0	0			REV__ENSG00000103534|ENST00000542583|TMC5	REV__ENSG00000103534|ENST00000542583|TMC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8021240234375	2	575.801811	1149.58907	0.13978	8.0484E-05	-0.67792	-0.00039035	-0.53814	-0.00030986	575.8013636895595	108.38	0.36011	108.38	108.16	108.52	0					41	17	3	0	0	0	1.0616	1	13877	13877		37.812	3.639	1	6708400	+		70628	21393	49518	49598	76973	76973					0.020258605894241555
RTRSTVPL	8	Unmodified	_RTRSTVPL_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.28021240234375	2	465.279983	928.545414	-0.049393	-2.2982E-05	0.34699	0.00016145	0.2976	0.00013847	465.27991717882145	87.975	1.3184	87.838	87.459	88.777	-0.13744					91	31	5	0	0	0	1.0198	1	10726	10726		34.173	3.6689	1	1523900	+		70629	19175	49519	49599	76974	76974					0.07828295882939074
RTRTALSSDAP	11	Unmodified	_RTRTALSSDAP_					0	0	0		ENST00000586599.1_3_19:38877641-38878420:-|nuORF	ENST00000586599.1_3_19:38877641-38878420:-|nuORF	ENST00000586599.1_3_19:38877641-38878420:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	588.8059692382812	2	587.812376	1173.6102	-0.56947	-0.00033474	3.6402	0.0021397	3.0707	0.001805	587.8144787950931	62.127	0.46738	61.913	61.662	62.13	-0.21375					21	11	2	0	0	0	0.024759	1	6992	6992		32.751	9.2278	1	523040			70630	17246	49520	49600	76975	76975					0.030338258982737898
RTRVGPAR	8	Unmodified	_RTRVGPAR_					0	0	0			REV__ENST00000395323.7_1_2:30454404-30457281:+|nuORF	REV__ENST00000395323.7_1_2:30454404-30457281:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2749328613281	2	456.777942	911.541332	-0.59692	-0.00027266	-2.6728	-0.0012209	-3.2697	-0.0014935	456.77668138804745	27.432	0.36343	27.514	27.208	27.571	0.081291					21	9	3	0	0	0	0.027866	1	1446	1446		10.866	0	1	1219700	+		70631	31695	49521	49601	76976	76976					0.08202251179886844
RTRWASVL	8	Unmodified	_RTRWASVL_					0	0	0		ENSG00000167397|ENST00000394975|VKORC1;ENST00000394971.7_1_16:31102457-31105584:-|nuORF	ENSG00000167397|ENST00000394975|VKORC1	ENSG00000167397|ENST00000394975|VKORC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7877502441406	2	494.787976	987.561398	-1.0018	-0.00049569	-1.0579	-0.00052345	-2.0598	-0.0010191	494.7874056551333	25.858	1.2065	25.694	25.373	26.579	-0.16342					62	32	4	0	0	0	0.71833	1	1223	1223		65.803	0	1	5031700			70632	7686	49522	49602	76977	76977					0.0671200211983205
RTRWAVRA	8	Unmodified	_RTRWAVRA_					0	0	0		ENST00000477755.1_1_1:10490858-10491098:+|nuORF	ENST00000477755.1_1_1:10490858-10491098:+|nuORF	ENST00000477755.1_1_1:10490858-10491098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2795104980469	2	508.299042	1014.58353	-0.47827	-0.0002431	3.4739	0.0017658	2.9957	0.0015227	508.3003920191912	47.943	0.5545	47.79	47.336	47.891	-0.15301					24	16	2	0	0	0	0.027866	1	4839	4839		31.955	12.595	1	412130			70633	15115	49523	49603	76978	76978					0.07682226588258345
RTRYTTEGRK	10	Unmodified	_RTRYTTEGRK_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENST00000531301.1_1_11:106697120-106698287:-|nuORF	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5472106933594	3	423.233704	1266.67928	0.1535	6.4966E-05	3.4379	0.001455	3.5914	0.00152	423.2351452535479	29.602	0.83573	29.453	28.956	29.792	-0.14952					43	19	3	0	0	0	0.03519	1	1750	1750		32.034	11.197	1	392770			70634	3866	49524	49604	76979	76979					0.05660909917810386
RTSKPIVK	8	Unmodified	_RTSKPIVK_					0	0	0			REV__ENSG00000187475|ENST00000338379|H1-6	REV__ENSG00000187475|ENST00000338379|H1-6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7640380859375	2	464.800552	927.58655	-0.48635	-0.00022606	0.73209	0.00034028	0.24574	0.00011422	464.8006174211913	22.128	1.0089	21.926	21.276	22.285	-0.20199					24	20	2	0	0	0	0.027866	1	685	685		17.365	5.1581	1	24993	+		70635	27932	49525	49605	76980	76980					0.11986056922410171
RTSLTDIWSY	10	Unmodified	_RTSLTDIWSY_					0	0	0			REV__ENSG00000103534|ENST00000542583|TMC5	REV__ENSG00000103534|ENST00000542583|TMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.313232421875	2	621.311677	1240.6088	0.018917	1.1754E-05	2.9325	0.001822	2.9514	0.0018338	621.3134783770568	66.633	3.4513	66.385	66.061	69.512	-0.24839					161	90	2	0	0	0	0.77808	1	7697	7697		62.107	0	1	29011000	+		70636	21393	49526	49606	76981	76981					-0.0018780819048060948
RTSLTDIWSY	10	Unmodified	_RTSLTDIWSY_					0	0	0			REV__ENSG00000103534|ENST00000542583|TMC5	REV__ENSG00000103534|ENST00000542583|TMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.31396484375	2	621.311677	1240.6088	-1.4993	-0.00093152	4.4058	0.0027374	2.9065	0.0018058	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.52982	1	7680	7680		84.916	21.382	1	29556000	+		70637	21393	49526	49606	76982	76982					-0.0018780819048060948
RTSRKRIL	8	Unmodified	_RTSRKRIL_					0	0	0			REV__nc|ENSG00000085563|P08183-2|ABCB1	REV__nc|ENSG00000085563|P08183-2|ABCB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3135375976562	2	515.335624	1028.6567	0.29932	0.00015425	-2.4512	-0.0012632	-2.1519	-0.001109	515.3339447885819	87.991	0.19128	87.854	87.721	87.912	-0.13613					5	4	2	0	0	0	0.027866	1	10732	10732		31.955	13.63	1	61489	+		70638	20754	49527	49607	76983	76983					0.14351355310895997
RTTDIVIRI	9	Unmodified	_RTTDIVIRI_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8350830078125	2	543.835123	1085.65569	-0.44908	-0.00024422	0.016174	8.7959E-06	-0.4329	-0.00023543	543.8350394234272	51.718	0.99146	51.718	51.359	52.351	0					75	27	4	0	0	0	0.038547	2	5495	5495;5505		134.77	49.605	1	5740300			70639	8599	49528	49608	76984;76985	76984					0.11629096151295926
RTTDIVIRI	9	Unmodified	_RTTDIVIRI_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8353881835938	2	543.835123	1085.65569	-1.169	-0.00063572	0.80639	0.00043854	-0.36257	-0.00019718	543.8354631924997	51.84	0.91973	51.693	51.406	52.326	-0.14735					75	25	4	0	0	0	0.065	1	5500	5500		123.21	51.331	1	5086400			70640	8599	49528	49608	76986	76986					0.11629096151295926
RTTDIVIRI	9	Unmodified	_RTTDIVIRI_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8350830078125	2	543.835123	1085.65569	-1.7171	-0.00093381	1.3131	0.00071411	-0.40397	-0.00021969	543.835701472817	51.581	0.81916	51.668	51.375	52.195	0.087006					69	22	4	0	0	0	0.013719	2	5407	5407;5419		168.26	61.251	1	4554300			70641	8599	49528	49608	76987;76988	76987					0.11629096151295926
RTTDLLTDW	9	Unmodified	_RTTDLLTDW_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.7850341796875	2	560.785296	1119.55604	0.74519	0.00041789	-0.72799	-0.00040825	0.017192	9.641E-06	560.7847756145318	67.817	1.0308	67.562	67.236	68.267	-0.25516					63	24	4	0	0	0	0.10174	3	7798	7798;7809;7821		110.12	35.077	1	3102200			70642	9952;677	49529	49609	76989;76990;76991	76989					0.0010423374669699115
RTTDLLTDW	9	Unmodified	_RTTDLLTDW_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7852172851562	2	560.785296	1119.55604	0.10306	5.7797E-05	-0.14971	-8.3953E-05	-0.046642	-2.6156E-05	560.7851124140096	67.831	0.89711	67.598	67.261	68.158	-0.23375					51	21	3	0	0	0	0.15366	1	7815	7815		98.629	18.917	1	2668900			70643	9952;677	49529	49609	76992	76992					0.0010423374669699115
RTTDLLTDW	9	Unmodified	_RTTDLLTDW_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.7853393554688	2	560.785296	1119.55604	-0.19604	-0.00010994	0.23715	0.00013299	0.041106	2.3052E-05	560.7852716826169	67.826	0.73624	67.588	67.334	68.07	-0.23814					50	17	4	0	0	0	0.2101	2	7812	7800;7812		87.696	17.199	1	2733900			70644	9952;677	49529	49609	76993;76994	76994					0.0010423374669699115
RTTEGFKKQF	10	Unmodified	_RTTEGFKKQF_					0	0	0			REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.5596618652344	3	414.559417	1240.65642	-0.37487	-0.00015541	0.20226	8.385E-05	-0.17261	-7.1557E-05	414.5594908845124	26.455	1.4893	26.286	25.87	27.359	-0.16816					94	37	4	0	0	0	0.811	1	1384	1384		59.931	0	1	5548900	+		70645	33022	49530	49610	76995	76995					0.04571890800366418
RTTEGFKKQF	10	Unmodified	_RTTEGFKKQF_					0	0	0			REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.5596618652344	3	414.559417	1240.65642	-0.54448	-0.00022572	0.23927	9.9192E-05	-0.30521	-0.00012653	414.55950089979723	26.527	1.1902	26.363	26.069	27.259	-0.16331					82	29	4	0	0	0	0.99657	1	1354	1354		46.457	0	1	6235000	+		70646	33022	49530	49610	76996	76996					0.04571890800366418
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.3107299804688	2	554.31148	1106.60841	-1.0444	-0.00057895	1.0614	0.00058834	0.016935	9.3874E-06	554.312049858242	44.148	0.47585	44.148	43.872	44.348	0					39	13	4	0	0	0	0.18994	2	4187	4187;4198		90.601	27.295	1	4180600			70647	5632;7555	49531	49611	76997;76998	76997					0.05936816880330298
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3115844726562	2	554.31148	1106.60841	-1.447	-0.00080207	1.6584	0.00091929	0.21145	0.00011721	554.3123190657358	44.318	0.50111	44.173	43.958	44.459	-0.14471					45	14	4	0	0	0	0.26413	2	4197	4197;4211		80.455	14.025	1	4158800			70648	5632;7555	49531	49611	76999;77000	76999					0.05936816880330298
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.3114624023438	2	554.31148	1106.60841	-0.38931	-0.0002158	0.58719	0.00032549	0.19788	0.00010969	554.3117321348636	44.186	0.61971	44.223	43.923	44.542	0.036903					46	17	4	0	0	0	0.14181	2	4135	4135;4148		101.25	29.375	1	4409400			70649	5632;7555	49531	49611	77001;77002	77001					0.05936816880330298
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	554.31148	1106.60841	-0.95214	-0.00052778	0.19345	0.00010723	-0.75869	-0.00042055	554.3113456530816	44.217	0.38661	44.113	43.925	44.312	-0.10468	-0.052056	-0.00085042	NaN	101.25	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340890			70650	5632;7555	49531	49611							0.05936816880330298
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	554.31148	1106.60841	-0.92097	-0.00051051	0.044263	2.4535E-05	-0.87671	-0.00048597	554.3116082949346	44.413	0.64647	44.169	43.829	44.476	-0.2444	0.0041987	-0.0010158	NaN	101.25	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436440			70651	5632;7555	49531	49611							0.05936816880330298
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	554.31148	1106.60841	-1.1663	-0.00064651	0.83476	0.00046272	-0.33157	-0.00018379	554.3115254890903	44.382	0.54016	44.163	44.006	44.546	-0.21939	-0.0017714	-0.00013945	NaN	101.25	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321440			70652	5632;7555	49531	49611							0.05936816880330298
RTTFLHIS	8	Unmodified	_RTTFLHIS_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;ENSG00000169692|ENST00000371696|AGPAT2;nc|ENSG00000169692|O15120-2|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7681884765625	2	487.774534	973.534515	0.13366	6.5197E-05	0.23385	0.00011407	0.36751	0.00017926	487.7741611378045	37.164	0.63038	37.1	36.749	37.379	-0.063389					27	16	2	0	0	0	0.027866	1	2973	2973		45.952	1.8352	1	137640			70653	7966	49532	49612	77003	77003					0.046688935086763195
RTTKAVKLL	9	Unmodified	_RTTKAVKLL_					0	0	0			REV__ENST00000424779.1_1_X:46316207-46316545:-|nuORF	REV__ENST00000424779.1_1_X:46316207-46316545:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3128051757812	2	515.342584	1028.67061	0.081425	4.1962E-05	-0.37611	-0.00019382	-0.29468	-0.00015186	515.3424782212113	88.149	0.12569	88.149	88.044	88.17	0					4	2	2	0	0	0	0.024457	1	11108	11108		45.952	3.5558	1	27229	+		70654	32239	49533	49613	77004	77004					0.15742588019315917
RTTKVAIFV	9	Unmodified	_RTTKVAIFV_					0	0	0			REV__ENSG00000169733|ENST00000310496|RFNG;REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF;REV__nc|ENSG00000100060|O00587-2|MFNG	REV__ENSG00000169733|ENST00000310496|RFNG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.8193359375	2	517.821484	1033.62842	-0.030829	-1.5964E-05	-4.0444	-0.0020943	-4.0752	-0.0021102	517.8192656635947	91.828	1.1456	91.837	91.4	92.546	0.0094147					75	27	4	0	0	0	0.70156	1	11545	11545		45.972	3.5761	1	1415000	+		70655	26396;35540;21041	49534	49614	77005	77005					0.1129461261095912
RTTLSIAI	8	Unmodified	_RTTLSIAI_					0	0	0		nc|ENSG00000189212|Q6NXN4|DPY19L2P1	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	nc|ENSG00000189212|Q6NXN4|DPY19L2P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.771240234375	2	437.77146	873.528367	-0.5483	-0.00024003	0.78824	0.00034507	0.23994	0.00010504	437.77166673528626	22.718	0.59623	22.532	22.281	22.877	-0.18539					33	12	4	0	0	0	0.95417	1	835	835		44.531	3.7529	1	397340			70656	18613	49535	49615	77006	77006					0.08654375277126292
RTTLVDNNTW	10	Unmodified	_RTTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	610.3072509765625	2	610.306926	1218.5993	-0.97005	-0.00059203	1.5163	0.0009254	0.54623	0.00033337	610.307474853891	50.232	0.67494	50.127	49.783	50.457	-0.10558					63	17	6	0	0	0	0.10722	1	5096	5096		133.99	62.116	1	2381700			70657	7098	49536	49616	77007	77007					-0.0012557647601170174
RTTLVDNNTW	10	Unmodified	_RTTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	610.3071899414062	2	610.306926	1218.5993	-0.1471	-8.9773E-05	0.40849	0.0002493	0.26139	0.00015953	610.307046130073	50.494	0.78423	50.215	49.914	50.699	-0.27977					54	20	4	0	0	0	0.085272	1	5123	5123		139.38	59.669	1	2483200			70658	7098	49536	49616	77008	77008					-0.0012557647601170174
RTTLVDNNTW	10	Unmodified	_RTTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	610.3069458007812	2	610.306926	1218.5993	0.019272	1.1762E-05	0.12987	7.9261E-05	0.14914	9.1023E-05	610.3069350388715	50.341	0.82148	50.16	49.826	50.647	-0.18071					55	21	5	0	0	0	0.060517	1	5101	5101		145.46	59.599	1	2529700			70659	7098	49536	49616	77009	77009					-0.0012557647601170174
RTTNIFFES	9	Unmodified	_RTTNIFFES_					0	0	0			REV__nc|ENSG00000136068|O75369-7|FLNB	REV__nc|ENSG00000136068|O75369-7|FLNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.3259887695312	2	557.780013	1113.54547	-0.072775	-4.0592E-05	-0.24412	-0.00013616	-0.31689	-0.00017675	557.7796519031122	53.685	0.24068	53.78	53.664	53.905	0.095669					8	6	2	0	0	0	0.024457	1	5749	5749		21.96	0	1	143040	+		70660	23622	49537	49617	77010	77010					-0.006757489077017453
RTTPAVLFW	9	Unmodified	_RTTPAVLFW_					0	0	0		ENSG00000164466|ENST00000321442|SFXN1;ENST00000507823.5_1_5:174919260-174949462:+|nuORF;ENST00000513725.1_1_5:174919106-174937211:+|nuORF	ENSG00000164466|ENST00000321442|SFXN1	ENSG00000164466|ENST00000321442|SFXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.8060913085938	2	545.805834	1089.59712	-0.40918	-0.00022334	0.32389	0.00017678	-0.085291	-4.6552E-05	545.8059104926652	72.971	1.6573	72.694	71.947	73.605	-0.2769					87	39	3	0	0	0	0.62163	1	8541	8541		51.335	1.8939	1	2256600			70661	7283	49538	49618	77011	77011					0.055900395768503586
RTTPAVLFW	9	Unmodified	_RTTPAVLFW_					0	0	0		ENSG00000164466|ENST00000321442|SFXN1;ENST00000507823.5_1_5:174919260-174949462:+|nuORF;ENST00000513725.1_1_5:174919106-174937211:+|nuORF	ENSG00000164466|ENST00000321442|SFXN1	ENSG00000164466|ENST00000321442|SFXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.806396484375	2	545.805834	1089.59712	-0.23169	-0.00012646	-0.16168	-8.8248E-05	-0.39338	-0.00021471	545.8057522238269	72.928	1.7259	72.663	71.881	73.607	-0.26479					117	41	5	0	0	0	0.4752	1	8567	8567		60.972	2.742	1	2467500			70662	7283	49538	49618	77012	77012					0.055900395768503586
RTTPAVLFW	9	Unmodified	_RTTPAVLFW_					0	0	0		ENSG00000164466|ENST00000321442|SFXN1;ENST00000507823.5_1_5:174919260-174949462:+|nuORF;ENST00000513725.1_1_5:174919106-174937211:+|nuORF	ENSG00000164466|ENST00000321442|SFXN1	ENSG00000164466|ENST00000321442|SFXN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.8060913085938	2	545.805834	1089.59712	-0.90555	-0.00049425	0.49347	0.00026934	-0.41208	-0.00022492	545.8060610052194	72.723	1.3641	72.525	71.788	73.152	-0.1981					94	32	4	0	0	0	0.4752	1	8530	8530		60.972	7.6205	1	2589900			70663	7283	49538	49618	77013	77013					0.055900395768503586
RTTVTVNLV	9	Unmodified	_RTTVTVNLV_					0	0	0			REV__ENSG00000126231|ENST00000375547|PROZ	REV__ENSG00000126231|ENST00000375547|PROZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.8005676269531	2	501.800749	1001.58694	-0.056011	-2.8107E-05	-0.97445	-0.00048898	-1.0305	-0.00051708	501.8002919452868	46.405	1.4184	46.456	46.063	47.482	0.051395					139	39	5	0	0	0	0.35646	1	4589	4589		68.787	2.3575	1	44212000	+		70664	22883	49539	49619	77014	77014					0.08621431851611305
RTVDARLKL	9	Unmodified	_RTVDARLKL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3353881835938	2	536.33529	1070.65603	3.0195	0.0016195	-3.0027	-0.0016105	0.01678	8.9996E-06	536.3335844259909	18.125	0.59756	17.882	17.627	18.224	-0.24256					28	11	4	0	0	0	0.99229	1	237	237		21.96	1.9631	1	297840			70665	3408	49540	49620	77015	77015					0.12352515871157266
RTVDNIELL	9	Unmodified	_RTVDNIELL_					0	0	0			REV__nc|ENSG00000067221|Q9UBI4-6|STOML1	REV__nc|ENSG00000067221|Q9UBI4-6|STOML1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2898559570312	2	536.803488	1071.59242	0.24691	0.00013254	1.9866	0.0010664	2.2335	0.001199	536.804702041617	82.173	0.4483	82.063	81.803	82.252	-0.11006					18	10	2	0	0	0	0.024466	1	10236	10236		39.253	1.4413	1	107850	+		70666	20355	49541	49621	77016	77016					0.05949110643427957
RTVHVGAR	8	Unmodified	_RTVHVGAR_					0	0	0			REV__ENST00000413272.6_1_8:27927872-27941294:-|nuORF	REV__ENST00000413272.6_1_8:27927872-27941294:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2352294921875	2	448.264668	894.514782	-0.74341	-0.00033325	-2.7939	-0.0012524	-3.5373	-0.0015857	448.263415425736	37.842	0.81545	37.874	37.487	38.303	0.032269					30	22	3	0	0	0	0.027866	1	3032	3032		37.159	0	1	141990	+		70667	32019	49542	49622	77017	77017					0.06330562288565034
RTVIIEQSW	9	Unmodified	_RTVIIEQSW_					0	0	0		HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.3111572265625	2	566.31148	1130.60841	-0.297	-0.0001682	0.1721	9.7461E-05	-0.12491	-7.0737E-05	566.3115021718753	56.398	0.79237	56.241	55.933	56.725	-0.15656					50	19	3	0	0	0	0.09527	2	6097	6097;6110		112.11	46.95	1	2452800			70668	5732	49543	49623	77018;77019	77018					0.04832816880320934
RTVIIEQSW	9	Unmodified	_RTVIIEQSW_					0	0	0		HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.3114013671875	2	566.31148	1130.60841	0.30396	0.00017214	-0.24994	-0.00014154	0.054021	3.0593E-05	566.3113445297524	56.453	0.95396	56.237	55.958	56.912	-0.21607					50	19	3	0	0	0	0.050291	2	6107	6107;6121		128.6	44.955	1	2343900			70669	5732	49543	49623	77020;77021	77020					0.04832816880320934
RTVIIEQSW	9	Unmodified	_RTVIIEQSW_					0	0	0		HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000476746.5_1_2:198360008-198364584:-|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF;nc|ENSG00000144381|P10809-2|HSPD1;ENST00000461097.1_1_2:198361816-198363572:-|nuORF	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.3113403320312	2	566.31148	1130.60841	-0.085969	-4.8685E-05	0.01665	9.429E-06	-0.069319	-3.9256E-05	566.3114714481721	56.495	0.82419	56.27	55.99	56.814	-0.22479					48	20	3	0	0	0	0.09527	2	6096	6096;6109		112.11	39.228	1	2660300			70670	5732	49543	49623	77022;77023	77022					0.04832816880320934
RTVIVYIE	8	Unmodified	_RTVIVYIE_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.75830078125	2	496.792392	991.570232	0.16118	8.0072E-05	-0.62874	-0.00031235	-0.46756	-0.00023228	496.7919974998197	68.739	0.65749	68.446	68.132	68.789	-0.29267					30	16	3	0	0	0	0.027866	1	8168	8168		30.504	0	1	291110	+		70671	32200	49544	49624	77024	77024					0.0741093096565919
RTVIVYIE	8	Unmodified	_RTVIVYIE_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.792392	991.570232	0.23144	0.00011498	-0.66011	-0.00032794	-0.42867	-0.00021296	496.79183908486567	68.354	0.4987	68.354	68.102	68.6	0	-0.063123	1.435E-05	NaN	30.504	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403330	+		70672	32200	49544	49624							0.0741093096565919
RTVIVYIE	8	Unmodified	_RTVIVYIE_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.792392	991.570232	0.43722	0.00021721	-0.77584	-0.00038543	-0.33861	-0.00016822	496.79189932761335	68.432	0.67062	68.451	68.198	68.869	0.018921	0.033859	-0.00010064	NaN	30.504	35	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447390	+		70673	32200	49544	49624							0.0741093096565919
RTVLFGDG	8	Unmodified	_RTVLFGDG_					0	0	0		ENST00000481118.1_1_10:915951-931670:-|nuORF	ENST00000481118.1_1_10:915951-931670:-|nuORF	ENST00000481118.1_1_10:915951-931670:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.74517822265625	2	432.732335	863.450116	-0.54242	-0.00023472	-3.6775	-0.0015914	-4.2199	-0.0018261	432.7307794983282	28.103	0.24287	27.934	27.847	28.089	-0.16897					7	5	2	0	0	0	0.027866	1	1606	1606		26.796	6.3143	1	52447			70674	15221	49545	49625	77025	77025					0.012929426918958598
RTVNLKSATW	10	Unmodified	_RTVNLKSATW_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.3299560546875	2	588.330205	1174.64586	-0.53528	-0.00031492	0.4365	0.0002568	-0.098781	-5.8116E-05	588.3303296715442	41.644	0.77084	41.512	41.219	41.99	-0.13154					54	20	4	0	0	0	0.62511	1	3704	3704		74.165	5.3782	1	1887900			70675	3512	49546	49626	77026	77026					0.06551908145934249
RTVNLKSATW	10	Unmodified	_RTVNLKSATW_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.330322265625	2	588.330205	1174.64586	-1.1648	-0.0006853	0.92006	0.0005413	-0.24476	-0.000144	588.3306587487921	41.872	0.72635	41.64	41.391	42.117	-0.23186					53	19	4	0	0	0	0.10407	2	3715	3715;3726		134.77	49.605	1	2257900			70676	3512	49546	49626	77027;77028	77027					0.06551908145934249
RTVNLKSATW	10	Unmodified	_RTVNLKSATW_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.3300170898438	2	588.330205	1174.64586	-0.69312	-0.00040778	0.49218	0.00028957	-0.20094	-0.00011822	588.330368525652	41.935	0.56292	41.704	41.434	41.997	-0.2303					48	15	4	0	0	0	0.1333	1	3724	3724		129.42	54.378	1	2322400			70677	3512	49546	49626	77029	77029					0.06551908145934249
RTVPFLLLL	9	Unmodified	_RTVPFLLLL_					0	0	0		ENST00000511500.1_1_5:119016267-119016600:+|nuORF	ENST00000511500.1_1_5:119016267-119016600:+|nuORF	ENST00000511500.1_1_5:119016267-119016600:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3292846679688	2	536.349877	1070.6852	1.5343	0.00082292	0.57403	0.00030788	2.1083	0.0011308	536.350137194295	19.08	0.29588	18.847	18.682	18.978	-0.23345					10	5	3	0	0	0	0.023635	1	351	351		76.774	0	1	33487			70678	15838	49547	49627	77030	77030					0.152686601674759
RTVRIWRQY	9	Unmodified	_RTVRIWRQY_					0	0	0		ENST00000272402.2_1_2:96932116-96934407:+|nuORF;ENSG00000144021|ENST00000488633|CIAO1	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.57879638671875	3	426.579034	1276.71527	-0.19234	-8.2048E-05	0.22175	9.4594E-05	0.029411	1.2546E-05	426.5790830656187	36.148	1.5952	35.943	35.544	37.14	-0.20518					119	42	4	0	0	0	0.6504	3	2790	2790;2814;2826		65.465	29.148	1	5660500			70679	5710	49548	49628	77031;77032;77033	77031					0.08798411885368296
RTVRIWRQY	9	Unmodified	_RTVRIWRQY_					0	0	0		ENST00000272402.2_1_2:96932116-96934407:+|nuORF;ENSG00000144021|ENST00000488633|CIAO1	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.57904052734375	3	426.579034	1276.71527	0.33053	0.000141	-0.33928	-0.00014473	-0.0087508	-3.7329E-06	426.5788493975335	36.177	1.6478	35.96	35.507	37.155	-0.21661					128	43	4	0	0	0	0.87448	1	2839	2839		41.427	15.535	1	5257800			70680	5710	49548	49628	77034	77034					0.08798411885368296
RTVRIWRQY	9	Unmodified	_RTVRIWRQY_					0	0	0		ENST00000272402.2_1_2:96932116-96934407:+|nuORF;ENSG00000144021|ENST00000488633|CIAO1	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	ENST00000272402.2_1_2:96932116-96934407:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.5793151855469	3	426.579034	1276.71527	1.0112	0.00043135	-1.0403	-0.00044379	-0.02915	-1.2435E-05	426.57854737301795	36.013	1.7982	35.815	35.366	37.164	-0.19829					129	47	4	0	0	0	0.6504	3	2755	2755;2782;2794		56.434	28.05	1	4843000			70681	5710	49548	49628	77035;77036;77037	77035					0.08798411885368296
RTVRTGKVFN	10	Unmodified	_RTVRTGKVFN_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3436889648438	2	589.343646	1176.67274	-0.17644	-0.00010399	-0.76869	-0.00045303	-0.94514	-0.00055701	589.343094607947	95.492	2.0638	95.369	94.554	96.618	-0.12251					103	47	4	0	0	0	1.1286	1	11754	11754		25.574	1.0549	1	959980			70682	8507	49549	49629	77038	77038					0.09147016757151505
RTVRVKATK	9	Unmodified	_RTVRVKATK_					0	0	0			REV__ENSG00000239789|ENST00000285298|MRPS17	REV__ENSG00000239789|ENST00000285298|MRPS17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.8080444335938	2	529.843282	1057.67201	-0.29499	-0.0001563	1.7196	0.0009111	1.4246	0.0007548	529.8443419126469	73.226	0.18701	73.235	73.068	73.255	0.0096512					5	4	2	0	0	0	0.024541	1	8852	8852		34.173	15.848	1	278000	+		70683	28955	49550	49630	77039	77039					0.14548222108078335
RTVSDAPPPP	10	Unmodified	_RTVSDAPPPP_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2567749023438	2	518.774731	1035.53491	-0.84596	-0.00043886	3.8687	0.002007	3.0228	0.0015681	519.2783411584347	24.015	0.60205	24.015	23.651	24.253	0					17	13	2	0	0	0	0.03519	1	1038	1038		47.96	13.787	1	91727	+		70684	25619	49551	49631	77040	77040					0.018562684378366612
RTVSRRYL	8	Unmodified	_RTVSRRYL_					0	0	0		ENST00000459781.5_1_6:36973566-36979631:+|nuORF;ENST00000464083.5_1_6:36973566-36981682:+|nuORF;ENSG00000146192|ENST00000274963|FGD2;nc|ENSG00000146192|Q7Z6J4-5|FGD2;ENST00000487975.5_1_6:36973566-36978850:+|nuORF	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	ENST00000459781.5_1_6:36973566-36979631:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.2791748046875	2	525.811982	1049.60941	-0.29567	-0.00015547	2.5141	0.0013219	2.2184	0.0011665	525.8131800130046	86.653	1.0662	86.653	86.128	87.194	0					63	24	3	0	0	0	0.027866	1	10964	10964		31.955	2.8053	1	226560			70685	5861	49552	49632	77041	77041					0.08659076039884894
RTVYFSEQW	9	Unmodified	_RTVYFSEQW_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.29345703125	2	608.293288	1214.57202	-1.2107	-0.00073647	1.0818	0.00065805	-0.12891	-7.8417E-05	608.293984628997	60.724	0.63675	60.518	60.213	60.849	-0.20599					51	15	4	0	0	0	0.013442	5	6755	6744;6755;6767;6781;6795		195.57	86.704	1	7115200			70686	5213	49553	49633	77042;77043;77044;77045;77046	77043					-0.026680600163899726
RTVYFSEQW	9	Unmodified	_RTVYFSEQW_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.2933959960938	2	608.293288	1214.57202	-1.0946	-0.00066581	0.72167	0.00043898	-0.37289	-0.00022682	608.2937628576447	60.451	0.83089	60.275	59.922	60.753	-0.1761					67	20	4	0	0	0	0.013442	5	6725	6715;6725;6736;6748;6763		182.39	86.704	1	6788000			70687	5213	49553	49633	77047;77048;77049;77050;77051	77048					-0.026680600163899726
RTVYFSEQW	9	Unmodified	_RTVYFSEQW_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.293212890625	2	608.293288	1214.57202	-0.95834	-0.00058295	0.61039	0.00037129	-0.34795	-0.00021166	608.2937492505387	60.732	0.64161	60.478	60.171	60.813	-0.25373					64	15	5	0	0	0	0.015512	4	6737	6737;6749;6763;6776		195.57	77.762	1	6793600			70688	5213	49553	49633	77052;77053;77054;77055	77052					-0.026680600163899726
RTWLPLTL	8	Unmodified	_RTWLPLTL_					0	0	0		ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.30133056640625	2	500.302927	998.591301	-1.1408	-0.00057074	-3.6963	-0.0018493	-4.8371	-0.00242	500.30089947209575	29.97	0.81556	29.97	29.652	30.467	0					43	19	3	0	0	0	0.6536	1	1899	1899		71.296	11.177	1	880320			70689	13574	49554	49634	77056	77056					0.09194941065175044
RTWLPLTL	8	Unmodified	_RTWLPLTL_					0	0	0		ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3013610839844	2	500.302927	998.591301	-0.63532	-0.00031785	-4.1964	-0.0020995	-4.8317	-0.0024173	500.3007084937186	29.933	1.0678	29.942	29.597	30.665	0.0086708					49	25	3	0	0	0	0.71063	1	1877	1877		66.429	8.1994	1	935750			70690	13574	49554	49634	77057	77057					0.09194941065175044
RTWMKQLL	8	Unmodified	_RTWMKQLL_					0	0	0			REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	REV__ENST00000450663.1_1_1:173111181-173111367:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2970581054688	2	538.307687	1074.60082	0.57912	0.00031174	4.0668	0.0021892	4.6459	0.0025009	538.3095034748421	59.429	1.2221	59.429	59.108	60.33	0					69	32	4	0	0	0	0.027866	1	6813	6813		88.643	9.1918	1	3091500	+		70691	32706	49555	49635	77058	77058					0.0665038607905899
RTWPHRSP	8	Unmodified	_RTWPHRSP_					0	0	0		ENSG00000006282|ENST00000006658|SPATA20	ENSG00000006282|ENST00000006658|SPATA20	ENSG00000006282|ENST00000006658|SPATA20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2567138671875	2	518.7754	1035.53625	-0.98123	-0.00050904	2.0579	0.0010676	1.0767	0.00055855	518.7764087086014	24.968	0.79939	24.968	24.253	25.052	0					24	17	2	0	0	0	0.027866	1	1052	1052		29.15	0	1	32875			70692	788	49556	49636	77059	77059					0.0198994731726998
RTWRRATS	8	Unmodified	_RTWRRATS_					0	0	0			REV__ENST00000415461.2_1_11:70256025-70261778:+|nuORF	REV__ENST00000415461.2_1_11:70256025-70261778:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2567138671875	2	517.286131	1032.55771	-1.2115	-0.00062669	4.0869	0.0021141	2.8754	0.0014874	517.2881166647879	24.393	0.31247	24.346	24.22	24.533	-0.047148					9	6	2	0	0	0	0.027866	1	1035	1035		18.324	0	1	30065	+		70693	32053	49557	49637	77060	77060					0.04273332345997005
RTWSLGNQF	9	Unmodified	_RTWSLGNQF_					0	0	0		ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2769775390625	2	554.780348	1107.54614	-0.40867	-0.00022672	-1.4464	-0.00080243	-1.8551	-0.0010292	554.7793980425738	41.145	0.62144	41.009	40.712	41.334	-0.13553					30	15	3	0	0	0	0.024436	1	3658	3658		30.504	0	1	699420			70694	17419	49558	49638	77061	77061					-0.003329094680111666
RTWSLGNQF	9	Unmodified	_RTWSLGNQF_					0	0	0		ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.2769165039062	2	554.780348	1107.54614	-0.72127	-0.00040015	-1.1754	-0.0006521	-1.8967	-0.0010523	554.7795416074777	41.407	0.6586	41.177	40.886	41.544	-0.23029					24	16	2	0	0	0	0.024457	1	3681	3681		37.159	16.212	1	810740			70695	17419	49558	49638	77062	77062					-0.003329094680111666
RTWSLGNQF	9	Unmodified	_RTWSLGNQF_					0	0	0		ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	ENST00000595545.5_1_19:40329790-40331059:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	554.780348	1107.54614	-0.14359	-7.9659E-05	-8.8303	-0.0048989	-8.9738	-0.0049785	554.7752654333361	41.035	0.14074	41.058	40.97	41.111	0.023006	-0.028698	-0.0079587	NaN	30.504	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121080			70696	17419	49558	49638							-0.003329094680111666
RTWTRVRK	8	Unmodified	_RTWTRVRK_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3062744140625	2	551.833249	1101.65194	0.10271	5.6681E-05	2.0686	0.0011415	2.1713	0.0011982	551.8343496925744	58.585	0.36008	58.404	58.268	58.628	-0.18134					14	8	2	0	0	0	0.027866	1	6448	6448		23.042	3.939	1	291840	+		70697	23860	49559	49639	77063	77063					0.10518471168120413
RTYFFVDNQYW	11	Unmodified	_RTYFFVDNQYW_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7747802734375	3	513.573614	1537.69901	-0.23379	-0.00012007	-0.23707	-0.00012175	-0.47086	-0.00024182	513.573165291049	47.742	0.43311	47.466	47.305	47.738	-0.27598					28	11	3	0	0	0	0.02486	1	4720	4720		17.833	10.814	1	270080			70698	10957	49560	49640	77064	77064					-0.048327588620395545
RTYFFVDNQYW	11	Unmodified	_RTYFFVDNQYW_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	513.573614	1537.69901	-0.22129	-0.00011365	-0.69656	-0.00035774	-0.91785	-0.00047138	513.5731778738023	47.362	0.48112	47.266	46.971	47.452	-0.096649	-0.062434	-0.000194	NaN	17.833	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312240			70699	10957	49560	49640							-0.048327588620395545
RTYFFVDNQYW	11	Unmodified	_RTYFFVDNQYW_					0	0	0		ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	ENSG00000262406|ENST00000571244|MMP12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	513.573614	1537.69901	0.0028716	1.4748E-06	-0.79862	-0.00041015	-0.79575	-0.00040867	513.5729890084826	47.447	0.47703	47.253	47.077	47.554	-0.19387	-0.075352	-0.00035123	NaN	17.833	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327570			70700	10957	49560	49640							-0.048327588620395545
RTYFWNEYCPA	11	Unmodified	_RTYFWNEYCPA_					0	0	0			REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.8798828125	3	483.88005	1448.61832	-0.22081	-0.00010684	-1.0076	-0.00048754	-1.2284	-0.00059438	483.87958323402785	43.587	1.0861	43.474	43.145	44.231	-0.11253					92	29	5	0	0	0	1.0013	2	4027	3991;4027		36.528	2.4414	1	6464900	+		70701	32817	49561	49641	77065;77066	77066					-0.08804363176591323
RTYFWNEYCPA	11	Unmodified	_RTYFWNEYCPA_					0	0	0			REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.8795471191406	3	483.88005	1448.61832	-0.87574	-0.00042375	-0.78435	-0.00037953	-1.6601	-0.00080329	483.87978664102775	43.739	1.2333	43.501	43.211	44.445	-0.23736					100	33	5	0	0	0	1.0013	2	4043	4030;4043		36.528	1.5624	1	7401700	+		70702	32817	49561	49641	77067;77068	77068					-0.08804363176591323
RTYFWNEYCPA	11	Unmodified	_RTYFWNEYCPA_					0	0	0			REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.8799133300781	3	483.88005	1448.61832	-0.68905	-0.00033342	-1.0925	-0.00052863	-1.7815	-0.00086205	483.8795800551414	43.764	1.0371	43.545	43.282	44.319	-0.21938					84	28	5	0	0	0	0.67481	2	4031	4031;4045		65.278	13.75	1	7264100	+		70703	32817	49561	49641	77069;77070	77069					-0.08804363176591323
RTYFWNEYCPA	11	Unmodified	_RTYFWNEYCPA_					0	0	0			REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	483.88005	1448.61832	-0.22081	-0.00010684	-1.0076	-0.00048754	-1.2284	-0.00059438	483.87958323402785	43.587	1.0861	43.474	43.145	44.231	-0.11253	-0.032639	-3.7634E-05	NaN	65.278	92	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6464900	+		70704	32817	49561	49641							-0.08804363176591323
RTYFWNEYCPA	11	Unmodified	_RTYFWNEYCPA_					0	0	0			REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	REV__ENST00000457967.1_1_1:113711666-113711915:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	483.88005	1448.61832	-0.68905	-0.00033342	-1.0925	-0.00052863	-1.7815	-0.00086205	483.8795800551414	43.764	1.0371	43.545	43.282	44.319	-0.21938	0.038097	-0.00016091	NaN	65.278	84	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7264100	+		70705	32817	49561	49641							-0.08804363176591323
RTYITFQTW	9	Unmodified	_RTYITFQTW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.3110961914062	2	608.31148	1214.60841	-0.20166	-0.00012267	0.69534	0.00042298	0.49367	0.00030031	608.3117946326915	67.674	0.62694	67.419	67.113	67.74	-0.25516					38	14	4	0	0	0	0.27445	1	7794	7794		72.243	34.735	1	877830			70706	1335	49562	49642	77071	77071					0.009688168803450026
RTYITFQTW	9	Unmodified	_RTYITFQTW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.311767578125	2	608.31148	1214.60841	-0.32202	-0.00019589	0.39001	0.00023725	0.067988	4.1358E-05	608.3117116507501	67.685	0.62188	67.451	67.175	67.797	-0.23376					42	14	4	0	0	0	0.032749	1	7806	7806		134.77	65.138	1	866800			70707	1335	49562	49642	77072	77072					0.009688168803450026
RTYITFQTW	9	Unmodified	_RTYITFQTW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.3108520507812	2	608.31148	1214.60841	-0.40346	-0.00024543	0.36413	0.00022151	-0.039326	-2.3923E-05	608.3115760296853	67.705	0.62783	67.467	67.159	67.787	-0.23814					37	14	4	0	0	0	0.15833	1	7794	7794		91.265	34.544	1	792770			70708	1335	49562	49642	77073	77073					0.009688168803450026
RTYPVQEYF	9	Unmodified	_RTYPVQEYF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.796875	2	601.795663	1201.57677	-0.39684	-0.00023882	1.7404	0.0010474	1.3436	0.00080855	601.7962371874512	58.433	0.87669	58.243	57.946	58.822	-0.19017					51	21	3	0	0	0	0.33603	1	6410	6410		70.816	21.28	1	1432400			70709	4938	49563	49643	77074	77074					-0.01595175873626431
RTYPVQEYF	9	Unmodified	_RTYPVQEYF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	601.795663	1201.57677	-0.40864	-0.00024592	1.1591	0.00069756	0.75049	0.00045164	601.796101245594	58.534	1.0549	58.347	57.964	59.019	-0.18795	0.057609	0.00016972	NaN	70.816	66	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1841200			70710	4938	49563	49643							-0.01595175873626431
RTYPVQEYF	9	Unmodified	_RTYPVQEYF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	601.795663	1201.57677	0.45766	0.00027542	0.37904	0.0002281	0.8367	0.00050352	601.7955637653275	58.519	1.0155	58.277	58.001	59.017	-0.24165	-0.01168	-0.00076919	NaN	70.816	68	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1757400			70711	4938	49563	49643							-0.01595175873626431
RTYRDNRRR	9	Unmodified	_RTYRDNRRR_					0	0	0		ENST00000378103.7_3_9:35748839-35749166:-|nuORF	ENST00000378103.7_3_9:35748839-35749166:-|nuORF	ENST00000378103.7_3_9:35748839-35749166:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.8885498046875	3	431.572942	1291.697	0.050575	2.1827E-05	0.1845	7.9627E-05	0.23508	0.00010145	431.57366449404776	22.118	0.43363	21.916	21.712	22.146	-0.20199					14	8	3	0	0	0	0.024541	1	709	709		31.634	0	1	23012			70712	13227	49564	49644	77075	77075					0.06281669963345848
RTYYNNSM	8	Unmodified	_RTYYNNSM_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENST00000525306.1_1_11:103152943-103158366:+|nuORF	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.7706909179688	2	524.729466	1047.44438	-0.63428	-0.00033282	4.462	0.0023413	3.8277	0.0020085	524.7316279092156	30.757	0.37169	30.769	30.584	30.956	0.011797					20	8	3	0	0	0	0.027866	1	1975	1975		25.45	12.491	1	223500			70713	9617	49565	49645	77076	77076					-0.07744523882070098
RVAAAQALGG	10	Unmodified	_RVAAAQALGG_					0	0	0			REV__ENST00000396912.1_1_7:5085626-5085824:+|nuORF	REV__ENST00000396912.1_1_7:5085626-5085824:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2635803222656	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	1.1267	1	9898	9898		29.15	0	1	4140300	+		70714	31750	49566	49646	77077	77077					0.054357228488470355
RVAAESPVL	9	Unmodified	_RVAAESPVL_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1;REV__STAB1|p.R1122Efs*108|1|0.27|ENSG00000010327|chr3:52513892-52513892|C/-|frameshift_variant	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.3104553222656	2	471.274367	940.53418	0.1484	6.9938E-05	-1.8996	-0.00089524	-1.7512	-0.0008253	471.27321048851246	19.954	0.24705	19.954	19.88	20.127	0					9	4	3	0	0	0	0.024412	1	469	469		50.025	3.2581	1	95675	+		70715	19906;37584	49567	49647	77078	77078					0.061534737887996016
RVAARRPPAP	10	Unmodified	_RVAARRPPAP_					0	0	0		ENST00000409871.5_1_2:113033208-113033313:+|nuORF	ENST00000409871.5_1_2:113033208-113033313:+|nuORF	ENST00000409871.5_1_2:113033208-113033313:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3168334960938	2	545.833249	1089.65194	-0.33572	-0.00018325	-3.0202	-0.0016485	-3.3559	-0.0018318	545.8317402294393	88.851	0.29565	88.713	88.524	88.819	-0.13761					8	6	2	0	0	0	0.03519	1	10836	10836		26.693	7.3329	1	43970			70716	13795	49568	49648	77079	77079					0.11070471168113727
RVAASLHN	8	Unmodified	_RVAASLHN_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.2414245605469	2	434.243401	866.472249	1.176	0.00051067	-1.4641	-0.00063578	-0.28812	-0.00012512	434.2426219361563	97.463	0.58077	97.339	97.063	97.643	-0.12368					16	12	2	0	0	0	1.0198	1	12069	12069		34.173	2.2177	1	173840			70717	5857	49569	49649	77080	77080					0.0336716716032015
RVAAVRAAA	9	Unmodified	_RVAAVRAAA_					0	0	0		nc|ENSG00000163964|Q8TBF5-2|PIGX;ENSG00000163964|ENST00000392391|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.77459716796875	2	442.774868	883.535184	-0.48008	-0.00021257	0.45936	0.00020339	-0.020716	-9.1725E-06	442.7749600535641	21.747	1.1735	21.747	21.584	22.757	0					62	24	4	0	0	0	0.27161	2	707	698;707		79.451	22.73	1	833890			70718	7183	49570	49650	77081;77082	77082					0.08875732948354198
RVAAVRAAA	9	Unmodified	_RVAAVRAAA_					0	0	0		nc|ENSG00000163964|Q8TBF5-2|PIGX;ENSG00000163964|ENST00000392391|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.77471923828125	2	442.774868	883.535184	-0.15963	-7.0679E-05	0.034539	1.5293E-05	-0.12509	-5.5386E-05	442.7747422656408	21.842	0.99396	21.751	21.545	22.539	-0.090094					46	20	4	0	0	0	0.59099	2	704	695;704		53.351	12.779	1	895540			70719	7183	49570	49650	77083;77084	77084					0.08875732948354198
RVAAVRAAA	9	Unmodified	_RVAAVRAAA_					0	0	0		nc|ENSG00000163964|Q8TBF5-2|PIGX;ENSG00000163964|ENST00000392391|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.7746276855469	2	442.774868	883.535184	-0.60691	-0.00026872	0.11843	5.2436E-05	-0.48848	-0.00021629	442.77474950671615	21.685	1.205	21.756	21.303	22.508	0.071487					59	24	3	0	0	0	0.27161	2	659	646;659		79.451	26.1	1	907210			70720	7183	49570	49650	77085;77086	77086					0.08875732948354198
RVAERLVNLNV	11	Unmodified	_RVAERLVNLNV_					0	0	0			REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8822021484375	2	641.883136	1281.75172	0.55581	0.00035677	-1.6557	-0.0010628	-1.0999	-0.00070601	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	1.0592	1	12149	12149		22.58	1.6327	1	3344500	+		70721	23962	49571	49651	77087	77087					0.12211243991418996
RVAERLVNLNV	11	Unmodified	_RVAERLVNLNV_					0	0	0			REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.882568359375	2	641.883136	1281.75172	0.89146	0.00057221	-2.0214	-0.0012975	-1.1299	-0.00072529	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.99129	2	12126	12126;12175		38.754	8.4359	1	2810000	+		70722	23962	49571	49651	77088;77089	77088					0.12211243991418996
RVAERLVNLNV	11	Unmodified	_RVAERLVNLNV_					0	0	0			REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8820190429688	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.013	3	12035	11757;11840;12035		33.922	3.6039	1	3558500	+		70723	23962	49571	49651	77090;77091;77092	77092					0.12211243991418996
RVAERLVNLNV	11	Unmodified	_RVAERLVNLNV_					0	0	0			REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.882568359375	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	0.96309	2	11883	11883;12049		45.022	7.0705	1	3453200	+		70724	23962	49571	49651	77093;77094	77093					0.12211243991418996
RVAEVQQVL	9	Unmodified	_RVAEVQQVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.30615234375	2	521.306198	1040.59784	-0.60362	-0.00031467	-1.0167	-0.00053002	-1.6203	-0.00084469	521.3059271953067	47.129	1.791	47.129	46.587	48.378	0					117	51	5	0	0	0	0.03666	6	4681	4672;4681;4693;4705;4717;4729		136.27	48.514	1	133990000			70725	9931	49572	49652	77095;77096;77097;77098;77099;77100	77096					0.07916834225898128
RVAEVQQVL	9	Unmodified	_RVAEVQQVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3062133789062	2	521.306198	1040.59784	0.28645	0.00014933	-1.932	-0.0010072	-1.6456	-0.00085785	521.3054800950314	47.297	1.7757	47.144	46.622	48.398	-0.15301					120	50	5	0	0	0	0.03201	6	4676	4676;4687;4699;4711;4723;4735		139.97	52.274	1	122020000			70726	9931	49572	49652	77101;77102;77103;77104;77105;77106	77101					0.07916834225898128
RVAEVQQVL	9	Unmodified	_RVAEVQQVL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.3053588867188	2	521.306198	1040.59784	-0.79443	-0.00041414	-0.90136	-0.00046989	-1.6958	-0.00088403	521.3059970896016	47.103	1.6013	47.162	46.693	48.294	0.059097					114	45	5	0	0	0	0.030064	6	4654	4608;4618;4630;4642;4654;4666		141.52	34.513	1	134960000			70727	9931	49572	49652	77107;77108;77109;77110;77111;77112	77111					0.07916834225898128
RVAFSRRPTTT	11	Unmodified	_RVAFSRRPTTT_					0	0	0		ENST00000457269.8_1_19:18547893-18548910:-|nuORF	ENST00000457269.8_1_19:18547893-18548910:-|nuORF	ENST00000457269.8_1_19:18547893-18548910:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	646.3659057617188	2	646.36511	1290.71567	0.10778	6.9666E-05	0.70606	0.00045637	0.81384	0.00052603	646.3656023172358	46.555	0.70706	46.294	45.93	46.637	-0.26118					53	18	4	0	0	0	1.0183	1	4506	4506		32.751	7.1765	1	8429100			70728	14607	49573	49653	77113	77113					0.08193786814558734
RVAGGVITTAT	11	Unmodified	_RVAGGVITTAT_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0017	1	10729	10729		36.447	2.2742	1	14210000			70729	7161	49574	49654	77114	77114					0.07224530363282611
RVAGIHKKV	9	Unmodified	_RVAGIHKKV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENST00000440687.1_1_20:44728270-44728609:+|nuORF	ENSG00000167526|ENST00000311528|RPL13;ENST00000440687.1_1_20:44728270-44728609:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.3270263671875	2	504.327268	1006.63998	0.23021	0.0001161	-0.72506	-0.00036567	-0.49486	-0.00024957	504.32693863208095	17.918	1.0817	17.775	17.552	18.634	-0.14278					58	21	5	0	0	0	0.4752	1	223	223		60.972	0.67798	1	3132500			70730	7696;14349	49575	49655	77115	77115					0.13692854424937195
RVAITLVGFMV	11	Oxidation (M)	_RVAITLVGFM(Oxidation (M))V_		RVAITLVGFM(1)V		RVAITLVGFM(49)V	0	0	1			REV__ENSG00000187616|ENST00000339996|MYMK	REV__ENSG00000187616|ENST00000339996|MYMK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3560791015625	2	611.354834	1220.69511	-1.8097	-0.0011063	3.9907	0.0024397	2.181	0.0013334	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	0.93615	1	11659	11659		49.442	14.29	1	13060000	+		70731	27949	49576	49656	77116	77116		830			0.09359480110538243
RVAKIMVPYG	10	Unmodified	_RVAKIMVPYG_					0	0	0			REV__ENSG00000078070|ENST00000265594|MCCC1	REV__ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.32958984375	2	567.328619	1132.64269	0.34076	0.00019332	1.7277	0.00098018	2.0685	0.0011735	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.1267	1	11261	11261		29.15	2.4566	1	4116000	+		70732	20602	49577	49657	77117	77117					0.08166941767581193
RVAKIMVPYG	10	Unmodified	_RVAKIMVPYG_					0	0	0			REV__ENSG00000078070|ENST00000265594|MCCC1	REV__ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3309326171875	2	567.328619	1132.64269	-0.94755	-0.00053757	3.0092	0.0017072	2.0617	0.0011697	567.33021605975	93.846	1.1071	93.706	93.353	94.46	-0.13995					91	25	5	0	0	0	1.0142	1	11554	11554		44.117	9.9443	1	1125700	+		70733	20602	49577	49657	77118	77118					0.08166941767581193
RVAKRAAMYL	10	Unmodified	_RVAKRAAMYL_					0	0	0			REV__nc|ENSG00000110619|P49589-2|CARS1	REV__nc|ENSG00000110619|P49589-2|CARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3434448242188	2	589.844968	1177.67538	-1.3165	-0.00077654	0.82182	0.00048475	-0.4947	-0.0002918	589.8454999146887	89.966	1.0811	89.803	89.012	90.093	-0.1626					54	25	3	0	0	0	0.03519	1	10961	10961		26.693	2.4902	1	1015600	+		70734	21864	49578	49658	77119	77119					0.0936514889042428
RVALHLRLLLA	11	Unmodified	_RVALHLRLLLA_					0	0	0		ENST00000258111.4_1_12:70760360-70760789:+|nuORF	ENST00000258111.4_1_12:70760360-70760789:+|nuORF	ENST00000258111.4_1_12:70760360-70760789:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7748718261719	3	425.61883	1273.83466	0.19892	8.4666E-05	3.3698	0.0014342	3.5687	0.0015189	425.62118721728956	42.014	0.16013	42.04	41.928	42.088	0.026012					6	4	2	0	0	0	0.024856	1	3758	3758		18.531	11.871	1	82981			70735	11413	49579	49659	77120	77120					0.20869605510097244
RVANSNAEH	9	Unmodified	_RVANSNAEH_					0	0	0			REV__NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	REV__NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.8035888671875	2	499.244129	996.473705	-0.41622	-0.00020779	0.46547	0.00023239	0.049255	2.459E-05	499.2443738681076	52.59	0.5154	52.463	52.157	52.672	-0.12705					19	12	2	0	0	0	0.02435	1	5500	5500		42.396	5.237	1	164800	+		70736	21817	49580	49660	77121	77121					-0.024672435415823202
RVANVPIKGSH	11	Unmodified	_RVANVPIKGSH_					0	0	0			REV__ENSG00000105085|ENST00000263390|MED26	REV__ENSG00000105085|ENST00000263390|MED26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3430786132812	2	589.343646	1176.67274	-0.57069	-0.00033633	-0.8775	-0.00051715	-1.4482	-0.00085348	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0292	1	11353	11353		30.318	3.6248	1	17343000	+		70737	21492	49581	49661	77122	77122					0.09147016757151505
RVAPPRALL	9	Unmodified	_RVAPPRALL_					0	0	0		nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.82122802734375	2	496.821818	991.629084	0.5965	0.00029636	-1.0619	-0.00052758	-0.46541	-0.00023123	496.82117310908046	42.281	0.71317	42.281	41.856	42.569	0					58	20	5	0	0	0	0.59099	1	3881	3881		53.351	14.545	1	2862400			70738	4915	49582	49662	77123	77123					0.13293452050652377
RVAPPRALL	9	Unmodified	_RVAPPRALL_					0	0	0		nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.8214111328125	2	496.821818	991.629084	-0.099619	-4.9493E-05	-0.13502	-6.708E-05	-0.23464	-0.00011657	496.821619907452	42.468	0.68154	42.336	41.921	42.602	-0.1322					53	19	4	0	0	0	0.43973	1	3893	3893		63.306	15.391	1	3016100			70739	4915	49582	49662	77124	77124					0.13293452050652377
RVAPPRALL	9	Unmodified	_RVAPPRALL_					0	0	0		nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	496.821818	991.629084	0.025616	1.2726E-05	-0.22812	-0.00011333	-0.2025	-0.00010061	496.8215724046988	42.39	0.58557	42.416	42.056	42.641	0.026012	0.071538	0.00022605	NaN	63.306	49	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2675100			70740	4915	49582	49662							0.13293452050652377
RVAPRLPL	8	Unmodified	_RVAPRLPL_					0	0	0			REV__ENST00000547760.1_3_14:31897374-31926552:-|nuORF	REV__ENST00000547760.1_3_14:31897374-31926552:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.3034362792969	2	461.303262	920.59197	0.0097486	4.4971E-06	-0.24632	-0.00011363	-0.23657	-0.00010913	461.30297129218974	45.897	0.62305	45.897	45.613	46.236	0					43	17	3	0	0	0	0.88442	1	4504	4504		52.299	0	1	1842400	+		70741	34869	49583	49663	77125	77125					0.12849780504882347
RVAQGVHRAL	10	Unmodified	_RVAQGVHRAL_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.829833984375	2	553.830706	1105.64686	-0.078213	-4.3317E-05	-1.2618	-0.0006988	-1.34	-0.00074212	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0271	1	11216	11216		42.396	1.618	1	4896800	+		70742	20443	49584	49664	77126	77126					0.09826167305527633
RVAQLEQV	8	Unmodified	_RVAQLEQV_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7718811035156	2	471.771991	941.529429	-0.12471	-5.8834E-05	-0.49778	-0.00023484	-0.62249	-0.00029367	471.77165558042	38.7	0.85935	38.7	38.395	39.254	0					39	22	2	0	0	0	0.62178	2	3262	3262;3281		74.255	5.4682	1	2994200			70743	2118	49585	49665	77127;77128	77127					0.05632589646052111
RVAQLEQV	8	Unmodified	_RVAQLEQV_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.77191162109375	2	471.771991	941.529429	-0.05246	-2.4749E-05	-0.4633	-0.00021857	-0.51576	-0.00024332	471.7716584735702	38.67	0.88539	38.572	38.278	39.163	-0.098755					43	23	2	0	0	0	0.38989	2	3242	3242;3257		98.629	13.714	1	2823100			70744	2118	49585	49665	77129;77130	77129					0.05632589646052111
RVAQLEQV	8	Unmodified	_RVAQLEQV_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7718200683594	2	471.771991	941.529429	-0.68598	-0.00032363	-0.032871	-1.5508E-05	-0.71885	-0.00033913	471.77185746834203	38.888	0.91705	38.916	38.612	39.529	0.027275					37	24	2	0	0	0	0.53593	2	3242	3229;3242		82.241	13.468	1	2768200			70745	2118	49585	49665	77131;77132	77132					0.05632589646052111
RVAQLEQV	8	Unmodified	_RVAQLEQV_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.771991	941.529429	-0.52904	-0.00024959	0.43134	0.00020349	-0.097702	-4.6093E-05	471.77207680483906	38.807	0.42288	38.585	38.334	38.757	-0.22148	-0.085666	0.00051818	NaN	98.629	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130060			70746	2118	49585	49665							0.05632589646052111
RVAQLEQV	8	Unmodified	_RVAQLEQV_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.771991	941.529429	-0.32661	-0.00015408	0.22098	0.00010425	-0.10563	-4.9833E-05	471.7719455195606	38.807	0.5237	38.582	38.282	38.806	-0.2257	-0.089106	0.00031969	NaN	98.629	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189300			70747	2118	49585	49665							0.05632589646052111
RVAQLEQVYI	10	Unmodified	_RVAQLEQVYI_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	609.8458862304688	2	609.845687	1217.67682	0.10182	6.2095E-05	-0.20752	-0.00012656	-0.1057	-6.4464E-05	609.8454871480545	59.832	1.2084	59.832	59.598	60.807	0					83	32	5	0	0	0	0.54106	2	6856	6856;6868		83.647	19.154	1	5426600			70748	2118	49586	49666	77133;77134	77133					0.0766906146020574
RVAQLEQVYI	10	Unmodified	_RVAQLEQVYI_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	609.845458984375	2	609.845687	1217.67682	-0.49182	-0.00029993	0.39669	0.00024192	-0.095123	-5.801E-05	609.8458377013973	60.048	1.0792	59.848	59.577	60.657	-0.20016					77	28	4	0	0	0	0.3202	2	6860	6860;6871		106.88	38.034	1	4685200			70749	2118	49586	49666	77135;77136	77135					0.0766906146020574
RVAQLEQVYI	10	Unmodified	_RVAQLEQVYI_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	609.8457641601562	2	609.845687	1217.67682	-1.5735	-0.00095961	1.5302	0.00093319	-0.043319	-2.6418E-05	609.8465285216106	59.746	1.0404	59.832	59.54	60.58	0.085682					79	27	4	0	0	0	0.70466	2	6761	6761;6774		66.962	21.94	1	3793600			70750	2118	49586	49666	77137;77138	77137					0.0766906146020574
RVAQLLERW	9	Unmodified	_RVAQLLERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.8418579101562	2	585.840739	1169.66693	-0.042198	-2.4721E-05	-0.016303	-9.551E-06	-0.058501	-3.4272E-05	585.8405935806946	53.076	0.77047	52.949	52.632	53.402	-0.12705					59	19	4	0	0	0	0.17845	2	5538	5528;5538		93.143	34.913	1	3319200			70751	18548	49587	49667	77139;77140	77140					0.08887918245477522
RVAQLLERW	9	Unmodified	_RVAQLLERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.8412475585938	2	585.840739	1169.66693	-0.51056	-0.00029911	0.15418	9.0327E-05	-0.35638	-0.00020878	585.8407349209743	53.312	0.72184	53.054	52.723	53.444	-0.25839					57	18	4	0	0	0	0.28753	1	5573	5573		77.318	13.11	1	3793600			70752	18548	49587	49667	77141	77141					0.08887918245477522
RVAQLLERW	9	Unmodified	_RVAQLLERW_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.8406982421875	2	585.840739	1169.66693	-0.55538	-0.00032537	0.17493	0.00010248	-0.38045	-0.00022289	585.8407671786753	53.079	0.87865	52.89	52.551	53.429	-0.18982					64	22	4	0	0	0	0.14181	2	5533	5533;5544		101.25	36.095	1	3918000			70753	18548	49587	49667	77142;77143	77142					0.08887918245477522
RVAQYVKRN	9	Unmodified	_RVAQYVKRN_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3299560546875	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.94809	1	11393	11393		29.15	7.1897	1	14972000	+		70754	23986	49588	49668	77144	77144					0.0855074758567298
RVAQYVKRN	9	Unmodified	_RVAQYVKRN_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3302612304688	2	567.330539	1132.64652	-0.25865	-0.00014674	-0.29157	-0.00016542	-0.55022	-0.00031216	567.3302396632416	88.151	1.3013	87.981	87.036	88.338	-0.17053					97	31	4	0	0	0	0.98128	1	10750	10750		24.203	3.2558	1	1743200	+		70755	23986	49588	49668	77145	77145					0.0855074758567298
RVARAVPQ	8	Unmodified	_RVARAVPQ_					0	0	0			REV__nc|ENSG00000126562|Q96J92-2|WNK4	REV__nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.77484130859375	2	448.774868	895.535184	-0.22576	-0.00010132	0.47402	0.00021273	0.24826	0.00011141	448.77492642052704	23.301	1.1762	23.301	23.033	24.209	0					42	27	2	0	0	0	0.81662	1	908	908		57.811	4.4598	1	963110	+		70756	22903	49589	49669	77146	77146					0.08323732948372253
RVARVSSSL	9	Unmodified	_RVARVSSSL_					0	0	0			REV__YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	REV__YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7905578613281	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.87448	1	10371	10371		34.173	0.67956	1	2003200	+		70757	20726	49590	49670	77147	77147					0.07903680911670108
RVARVSSSL	9	Unmodified	_RVARVSSSL_					0	0	0			REV__YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	REV__YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7906799316406	2	487.790715	973.566878	0.37956	0.00018514	-0.58277	-0.00028427	-0.20321	-9.9126E-05	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.75397	2	10003	10003;10027		42.396	8.2236	1	2659000	+		70758	20726	49590	49670	77148;77149	77148					0.07903680911670108
RVASLLPL	8	Unmodified	_RVASLLPL_					0	0	0			REV__ENST00000392507.7_1_17:45899089-45899140:-|nuORF	REV__ENST00000392507.7_1_17:45899089-45899140:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7592468261719	2	434.78437	867.554188	0.62544	0.00027193	0.8995	0.00039109	1.5249	0.00066302	434.7848097469379	86.836	0.16605	86.836	86.733	86.899	0					5	3	2	0	0	0	0.027866	1	10904	10904		26.796	0	1	27552	+		70759	31607	49591	49671	77150	77150					0.11511269519428424
RVASSVFRAAM	11	Unmodified	_RVASSVFRAAM_					0	0	0			REV__ENST00000328070.10_1_19:57134131-57134404:+|nuORF	REV__ENST00000328070.10_1_19:57134131-57134404:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8565063476562	2	597.824232	1193.63391	-2.0499	-0.0012255	1.639	0.00097986	-0.41085	-0.00024562	597.8254324137662	92.8	0.12624	92.656	92.57	92.696	-0.14356					4	2	2	0	0	0	0.024753	1	11402	11402		38.754	0	1	19927	+		70760	30425	49592	49672	77151	77151					0.04483968131103211
RVATELVR	8	Unmodified	_RVATELVR_					0	0	0			REV__ENST00000251413.7_1_17:40761703-40762213:+|nuORF	REV__ENST00000251413.7_1_17:40761703-40762213:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.74835205078125	2	472.287808	942.561064	0.16349	7.7215E-05	3.0871	0.001458	3.2506	0.0015352	472.28903233689925	44.314	2.1072	44.351	43.743	45.85	0.0369					145	60	3	0	0	0	0.027866	1	4331	4331		38.806	5.2906	1	1217100	+		70761	29505	49593	49673	77152	77152					0.08748582400005489
RVAYALKLE	9	Unmodified	_RVAYALKLE_					0	0	0			REV__ENST00000566574.5_1_16:70398922-70399087:+|nuORF	REV__ENST00000566574.5_1_16:70398922-70399087:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8175048828125	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.51687	1	11148	11148		58.23	3.4536	1	3741200	+		70762	25125	49594	49674	77153	77153					0.09498308748334239
RVAYALKLE	9	Unmodified	_RVAYALKLE_					0	0	0			REV__ENST00000566574.5_1_16:70398922-70399087:+|nuORF	REV__ENST00000566574.5_1_16:70398922-70399087:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8165893554688	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.94809	1	10594	10594		29.15	1.2673	1	4853400	+		70763	25125	49594	49674	77154	77154					0.09498308748334239
RVAYQKDRRW	10	Unmodified	_RVAYQKDRRW_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.9220275878906	3	459.92146	1376.74255	-0.22331	-0.00010271	-0.26953	-0.00012396	-0.49284	-0.00022667	459.92134079568535	24.658	0.8666	24.483	24.21	25.077	-0.17484					55	19	4	0	0	0	1.0728	1	1110	1110		36.318	7.7409	1	1471500			70764	3327	49595	49675	77155	77155					0.0692489542570911
RVAYQKDRRW	10	Unmodified	_RVAYQKDRRW_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.92156982421875	3	459.92146	1376.74255	2.0825	0.00095781	-2.6814	-0.0012332	-0.59887	-0.00027543	459.92021315337473	24.664	0.95208	24.483	24.198	25.15	-0.18089					59	21	4	0	0	0	1.0275	1	1081	1081		42.338	8.2516	1	1116400			70765	3327	49595	49675	77156	77156					0.0692489542570911
RVCSDWNTRT	10	Unmodified	_RVCSDWNTRT_					0	0	0		ENST00000342992.10_3_2:179584396-179584768:-|nuORF	ENST00000342992.10_3_2:179584396-179584768:-|nuORF	ENST00000342992.10_3_2:179584396-179584768:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.1948547363281	3	413.196261	1236.56695	-0.38705	-0.00015993	-2.3851	-0.00098551	-2.7721	-0.0011454	413.1952091488082	23.248	0.95339	23.068	22.697	23.651	-0.17989					52	21	4	0	0	0	0.88431	1	898	898		55.084	11.433	1	1196800			70766	12522	49596	49676	77157	77157					-0.041866871506726966
RVDAITLKHVK	11	Unmodified	_RVDAITLKHVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.2650451660156	3	427.266345	1278.7772	-0.58513	-0.00025001	-3.9587	-0.0016914	-4.5439	-0.0019414	427.2647783278071	53.901	2.7621	53.765	53.393	56.155	-0.13616					276	78	6	0	0	0	1.0371	1	5758	5758		28.577	4.3449	1	50487000	+		70767	25017	49597	49677	77158	77158					0.14896718513818996
RVDENNPEY	9	Unmodified	_RVDENNPEY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.2540893554688	2	568.25436	1134.49417	-0.42648	-0.00024235	0.12971	7.3706E-05	-0.29678	-0.00016864	568.254418718822	30.866	0.65863	30.688	30.41	31.069	-0.17818					28	15	2	0	0	0	0.16638	2	2009	1996;2009		95.815	13.065	1	1241200			70768	1843	49598	49678	77159;77160	77160					-0.06770117672431297
RVDENNPEY	9	Unmodified	_RVDENNPEY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.2544555664062	2	568.25436	1134.49417	-0.12752	-7.2464E-05	-0.1806	-0.00010262	-0.30812	-0.00017509	568.2542847251697	30.828	0.57989	30.676	30.426	31.006	-0.15231					25	13	2	0	0	0	0.26413	2	1985	1974;1985		80.455	22.225	1	1238700			70769	1843	49598	49678	77161;77162	77162					-0.06770117672431297
RVDENNPEY	9	Unmodified	_RVDENNPEY_					0	0	0		nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;ENST00000540541.1_1_4:2877642-2877930:+|nuORF	nc|ENSG00000087274|P35611-2|ADD1	nc|ENSG00000087274|P35611-2|ADD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	568.25436	1134.49417	-0.35708	-0.00020291	0.032476	1.8455E-05	-0.32461	-0.00018446	568.2543314853896	30.972	0.68773	30.731	30.497	31.185	-0.24109	0.032492	5.8558E-06	NaN	95.815	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1338200			70770	1843	49598	49678							-0.06770117672431297
RVDEVARL	8	Unmodified	_RVDEVARL_					0	0	0			REV__nc|ENSG00000071054|O95819-4|MAP4K4	REV__nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2781066894531	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.87148	2	10402	10402;10414		53.351	2.016	1	4947400	+		70771	19489	49599	49679	77163;77164	77163					0.06031992020314192
RVDFLRARG	9	Unmodified	_RVDFLRARG_					0	0	0			REV__chr1:161038634-161038880|496|28.82|0.0|21.46|-|2|None,TSTD1|1	REV__chr1:161038634-161038880|496|28.82|0.0|21.46|-|2|None,TSTD1|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3162231445312	2	545.317432	1088.62031	-0.35893	-0.00019573	-1.424	-0.00077654	-1.7829	-0.00097227	545.3165463924156	92.202	1.4758	92.061	91.66	93.136	-0.14131					107	34	4	0	0	0	0.87448	1	11308	11308		34.173	0.25091	1	1496200	+		70772	19315	49600	49680	77165	77165					0.07954478414171717
RVDGLMLKFV	10	Unmodified	_RVDGLMLKFV_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.34423828125	2	589.341726	1176.6689	-2.3877	-0.0014071	4.3747	0.0025782	1.987	0.001171	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0992	1	11418	11418		32.812	2.4947	1	4758600			70773	3130	49601	49681	77166	77166					0.08763210939059718
RVDGLMLKFV	10	Unmodified	_RVDGLMLKFV_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3436279296875	2	589.341726	1176.6689	-1.6034	-0.00094497	3.5155	0.0020718	1.9121	0.0011269	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0271	1	11021	11021		42.396	8.2236	1	5827400			70774	3130	49601	49681	77167	77167					0.08763210939059718
RVDGLMLKFV	10	Unmodified	_RVDGLMLKFV_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.341726	1176.6689	-1.9349	-0.0011403	3.84	0.002263	1.9051	0.0011227	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0616	1	11295	11295		37.812	7.4938	1	15816000			70775	3130	49601	49681	77168	77168					0.08763210939059718
RVDGLMLKFV	10	Unmodified	_RVDGLMLKFV_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3440551757812	2	589.341726	1176.6689	-1.3212	-0.00077864	3.3274	0.001961	2.0062	0.0011823	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0781	1	11164	11164		35.618	5.3006	1	5175100			70776	3130	49601	49681	77169	77169					0.08763210939059718
RVDHHYVR	8	Unmodified	_RVDHHYVR_					0	0	0			REV__nc|ENSG00000164287|Q86Y33-3|CDC20B	REV__nc|ENSG00000164287|Q86Y33-3|CDC20B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.3084716796875	2	541.286131	1080.55771	-0.48737	-0.00026381	0.90254	0.00048853	0.41517	0.00022472	541.2866410509788	42.696	0.468	42.696	42.534	43.002	0					20	12	2	0	0	0	0.027866	1	3970	3970		47.916	10.104	1	217610	+		70777	25728	49602	49682	77170	77170					0.02065332345978277
RVDPAKGLFYF	11	Unmodified	_RVDPAKGLFYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.2393493652344	3	438.239796	1311.69756	0.27829	0.00012196	-0.24961	-0.00010939	0.028689	1.2573E-05	438.2395404886811	67.37	0.87202	67.115	66.828	67.7	-0.25516					49	20	4	0	0	0	0.91387	1	7758	7758		50.791	10.918	1	1619700			70778	5711	49603	49683	77171	77171					0.05417651839843529
RVDPAKGLFYF	11	Unmodified	_RVDPAKGLFYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	438.239796	1311.69756	-0.29926	-0.00013115	0.22682	9.9402E-05	-0.072442	-3.1747E-05	438.2397348620251	67.343	1.112	67.119	66.816	67.928	-0.22374	0.022052	0.00034739	NaN	50.791	73	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1467400			70779	5711	49603	49683							0.05417651839843529
RVDPAKGLFYF	11	Unmodified	_RVDPAKGLFYF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	438.239796	1311.69756	0.027163	1.1904E-05	0.080227	3.5159E-05	0.10739	4.7062E-05	438.2396105026289	67.296	0.99019	67.058	66.796	67.787	-0.23814	-0.03956	0.00015466	NaN	50.791	56	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1300200			70780	5711	49603	49683							0.05417651839843529
RVDPNGSRY	9	Unmodified	_RVDPNGSRY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2671508789062	2	532.267604	1062.52066	0.080225	4.2701E-05	-0.82632	-0.00043982	-0.74609	-0.00039712	532.2672523365244	23.208	1.1045	23.006	22.687	23.792	-0.20193					67	24	4	0	0	0	0.16539	3	893	884;893;918		96.034	24.156	1	2382500			70781	7763;16501	49604	49684	77172;77173;77174	77173					-0.008103839904151755
RVDPNGSRY	9	Unmodified	_RVDPNGSRY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.267333984375	2	532.267604	1062.52066	-0.81119	-0.00043177	0.16149	8.5956E-05	-0.6497	-0.00034582	532.2677992848207	23.314	1.0763	23.134	22.836	23.913	-0.17989					62	24	4	0	0	0	0.094442	2	897	889;897		112.41	27.25	1	3207700			70782	7763;16501	49604	49684	77175;77176	77176					-0.008103839904151755
RVDPNGSRY	9	Unmodified	_RVDPNGSRY_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2674560546875	2	532.267604	1062.52066	1.386	0.00073772	-2.1461	-0.0011423	-0.76015	-0.00040461	532.2665208031348	23.248	1.125	23.057	22.758	23.883	-0.19117					64	25	4	0	0	0	0.18994	2	863	863;873		90.601	25.135	1	2914900			70783	7763;16501	49604	49684	77177;77178	77177					-0.008103839904151755
RVDPRIGG	8	Unmodified	_RVDPRIGG_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.25152587890625	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.043	1	9903	9903		30.504	2.6214	1	1708300			70784	4823	49605	49685	77179	77179					0.04839453677391248
RVDPRIGG	8	Unmodified	_RVDPRIGG_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2518310546875	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	0.99042	1	9925	9925		38.806	1.647	1	1610700			70785	4823	49605	49685	77180	77180					0.04839453677391248
RVDPRIGG	8	Unmodified	_RVDPRIGG_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2516784667969	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.0106	2	9872	9722;9872		35.618	3.6825	1	1590300			70786	4823	49605	49685	77181;77182	77182					0.04839453677391248
RVDPRIGG	8	Unmodified	_RVDPRIGG_					0	0	0		ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2518005371094	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0239	1	9334	9334		33.516	10.473	1	2257900			70787	4823	49605	49685	77183	77183					0.04839453677391248
RVDRERLQTRL	11	Unmodified	_RVDRERLQTRL_					0	0	0			REV__ENSG00000095066|ENST00000397668|HOOK2	REV__ENSG00000095066|ENST00000397668|HOOK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2830505371094	3	481.283057	1440.82734	-0.010732	-5.1652E-06	0.96542	0.00046464	0.95469	0.00045948	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.0855	1	12866	12866		15.337	1.2515	1	1064100	+		70788	20957	49606	49686	77184	77184					0.1245622117169205
RVDRILGG	8	Unmodified	_RVDRILGG_					0	0	0			REV__nc|ENSG00000164889|P04920-2|SLC4A2	REV__nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.26678466796875	2	443.266876	884.519199	0.094753	4.2001E-05	0.13538	6.0008E-05	0.23013	0.00010201	443.2668579656422	85.931	1.078	85.736	85.386	86.464	-0.19507					68	24	4	0	0	0	1.0239	1	10432	10432		33.516	0	1	1006800	+		70789	25813	49607	49687	77185	77185					0.07232026711483286
RVDRIPGG	8	Unmodified	_RVDRIPGG_					0	0	0			REV__ENSG00000172318|ENST00000392690|B3GALT1	REV__ENSG00000172318|ENST00000392690|B3GALT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.25128173828125	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	0.99042	4	9846	9714;9772;9814;9846		38.806	3.0119	1	1708300	+		70790	26658	49608	49688	77186;77187;77188;77189	77189					0.04839453677391248
RVDRIPGG	8	Unmodified	_RVDRIPGG_					0	0	0			REV__ENSG00000172318|ENST00000392690|B3GALT1	REV__ENSG00000172318|ENST00000392690|B3GALT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.25164794921875	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	1.043	1	9875	9875		30.504	1.3541	1	1610700	+		70791	26658	49608	49688	77190	77190					0.04839453677391248
RVDRIPGG	8	Unmodified	_RVDRIPGG_					0	0	0			REV__ENSG00000172318|ENST00000392690|B3GALT1	REV__ENSG00000172318|ENST00000392690|B3GALT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.25152587890625	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	0.96719	3	9768	9676;9768;9781		42.474	1.647	1	1590300	+		70792	26658	49608	49688	77191;77192;77193	77192					0.04839453677391248
RVDRIPGG	8	Unmodified	_RVDRIPGG_					0	0	0			REV__ENSG00000172318|ENST00000392690|B3GALT1	REV__ENSG00000172318|ENST00000392690|B3GALT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2513427734375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0239	3	9596	9537;9596;9610		33.516	1.3541	1	2257900	+		70793	26658	49608	49688	77194;77195;77196	77195					0.04839453677391248
RVDRIPGG	8	Unmodified	_RVDRIPGG_					0	0	0			REV__ENSG00000172318|ENST00000392690|B3GALT1	REV__ENSG00000172318|ENST00000392690|B3GALT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.25177001953125	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0572	2	9325	9325;9664		28.254	0	1	2292300	+		70794	26658	49608	49688	77197;77198	77197					0.04839453677391248
RVDRIPGG	8	Unmodified	_RVDRIPGG_					0	0	0			REV__ENSG00000172318|ENST00000392690|B3GALT1	REV__ENSG00000172318|ENST00000392690|B3GALT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2511901855469	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0239	3	9361	9361;9570;9634		33.516	3.0119	1	1872200	+		70795	26658	49608	49688	77199;77200;77201	77199					0.04839453677391248
RVDRKCFLSD	10	Unmodified	_RVDRKCFLSD_					0	0	0		MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|15|2|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|15|2|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|15|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	619.8682861328125	2	619.819147	1237.62374	-0.38539	-0.00023887	3.0173	0.0018702	2.6319	0.0016313	619.8211149786495	94.381	0.60595	94.381	93.967	94.573	0					21	14	2	0	0	0	0.03519	1	11958	11958		42.864	11.334	1	83262			70796	17972	49609	49689	77202	77202					0.014433604058694982
RVDRNAGR	8	Unmodified	_RVDRNAGR_					0	0	0			REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	REV__nc|ENSG00000251322|Q9BYB0-3|SHANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7483215332031	2	472.262656	942.51076	-0.091368	-4.315E-05	2.2226	0.0010496	2.1312	0.0010065	472.26366219385136	45.424	0.37107	45.275	45.044	45.415	-0.1488					16	10	2	0	0	0	0.027866	1	4381	4381		20.947	1.587	1	117990	+		70797	37168	49610	49690	77203	77203					0.03720472794850593
RVDVVKPGN	9	Unmodified	_RVDVVKPGN_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2853088378906	2	492.285266	982.555979	-0.42242	-0.00020795	0.47536	0.00023401	0.052947	2.6065E-05	492.2854628512751	93.253	1.2091	93.249	92.819	94.028	-0.0042038					66	28	4	0	0	0	0.91321	1	11791	11791		31.53	2.3803	1	2255100			70798	6595	49611	49691	77204	77204					0.06400278537375925
RVEAVLHSL	9	Unmodified	_RVEAVLHSL_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.786376953125	2	512.300916	1022.58728	-0.26608	-0.00013631	3.8613	0.0019782	3.5952	0.0018418	512.302760742005	66.412	0.50116	66.163	65.94	66.441	-0.2484					39	12	4	0	0	0	0.024418	1	7649	7649		45.972	0	1	1421300	+		70799	27166	49612	49692	77205	77205					0.07688851571481337
RVEEAIHPV	9	Unmodified	_RVEEAIHPV_					0	0	0		ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	ENST00000367590.8_1_1:180601192-180601402:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2901611328125	2	525.290548	1048.56654	-0.67733	-0.0003558	-0.047616	-2.5012E-05	-0.72495	-0.00038081	525.2904347041517	33.585	0.88156	33.592	33.355	34.237	0.0066261					41	22	3	0	0	0	0.31037	1	2429	2429		74.255	15.473	1	2183100			70800	12865	49613	49693	77206	77206					0.044202611917853574
RVEELEMTE	9	Unmodified	_RVEELEMTE_					0	0	0		ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1;ENST00000562090.5_1_16:74487067-74506519:-|nuORF	ENSG00000090863|ENST00000422840|GLG1	ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2314453125	2	568.268621	1134.52269	0.09345	5.3104E-05	0.59351	0.00033727	0.68696	0.00039038	568.268757317622	76.299	1.0961	76.048	75.603	76.699	-0.25163					62	26	4	0	0	0	0.024457	1	9080	9080		21.96	0	1	1013000			70801	1942	49614	49694	77207	77207					-0.03919136087483821
RVEGGVRP	8	Unmodified	_RVEGGVRP_					0	0	0		nc|ENSG00000164048|Q86UQ0-2|ZNF589;ENSG00000164048|ENST00000354698|ZNF589;ENST00000457782.5_1_3:48298389-48310273:+|nuORF;nc|ENSG00000164048|Q86UQ0-3|ZNF589	nc|ENSG00000164048|Q86UQ0-2|ZNF589	nc|ENSG00000164048|Q86UQ0-2|ZNF589	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2512512207031	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	0.99042	1	9702	9702		38.806	4.6336	1	1610700			70802	7195	49615	49695	77208	77208					0.04839453677379879
RVEGPVKKLPE	11	Unmodified	_RVEGPVKKLPE_					0	0	0		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.9208679199219	3	417.918834	1250.73467	-0.018505	-7.7338E-06	4.3476	0.0018169	4.3291	0.0018092	417.9205654200903	45.869	1.9879	45.914	45.28	47.268	0.044941					171	56	4	0	0	0	0.99648	1	4423	4423		37.6	5.5658	1	3223500			70803	2899	49616	49696	77209	77209					0.1193332338559685
RVEHLLKTGQF	11	Unmodified	_RVEHLLKTGQF_					0	0	0			REV__nc|ENSG00000130226|P42658-2|DPP6	REV__nc|ENSG00000130226|P42658-2|DPP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.7348327636719	3	443.254216	1326.74082	1.8864	0.00083617	-1.1699	-0.00051855	0.71656	0.00031762	443.2538201507097	23.336	0.26659	23.145	22.942	23.209	-0.19117					6	5	2	0	0	0	0.024746	1	886	886		21.032	11.386	1	20160	+		70804	23093	49617	49697	77210	77210					0.09051841617133505
RVEILRNF	8	Unmodified	_RVEILRNF_					0	0	0		ENSG00000171855|ENST00000380232|IFNB1	ENSG00000171855|ENST00000380232|IFNB1	ENSG00000171855|ENST00000380232|IFNB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2696533203125	2	523.808908	1045.60326	-0.62884	-0.00032939	-1.583	-0.00082918	-2.2118	-0.0011586	523.8085202016576	35.554	0.32	35.338	35.176	35.496	-0.21555					10	7	2	0	0	0	0.027866	1	2694	2694		19.36	7.1531	1	58741			70805	8205	49618	49698	77211	77211					0.08228557808365622
RVEILRNF	8	Unmodified	_RVEILRNF_					0	0	0		ENSG00000171855|ENST00000380232|IFNB1	ENSG00000171855|ENST00000380232|IFNB1	ENSG00000171855|ENST00000380232|IFNB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.808908	1045.60326	-0.46121	-0.00024159	0.18334	9.6033E-05	-0.27787	-0.00014555	523.808558177196	35.681	0.54846	35.725	35.42	35.968	0.04406	0.12324	-0.00020954	NaN	19.36	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175880			70806	8205	49618	49698							0.08228557808365622
RVEKTIPYSD	10	Unmodified	_RVEKTIPYSD_					0	0	0		ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000435590.1_1_21:46097057-46097849:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.8721008300781	3	403.215427	1206.62445	0.36964	0.00014904	-2.1659	-0.00087333	-1.7963	-0.00072428	403.21436400936744	33.078	0.44232	32.847	32.711	33.153	-0.23107					14	10	2	0	0	0	0.03519	1	2327	2327		27.047	0	1	69062			70807	14263	49619	49699	77212	77212					0.029404783265590595
RVELGFKPY	9	Unmodified	_RVELGFKPY_					0	0	0			REV__ENST00000315302.6_1_4:183063492-183063612:-|nuORF	REV__ENST00000315302.6_1_4:183063492-183063612:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.8063354492188	2	554.811116	1107.60768	-0.92312	-0.00051216	-3.9182	-0.0021739	-4.8413	-0.002686	554.8088772094743	46.049	0.90938	45.847	45.563	46.472	-0.20226					58	24	5	0	0	0	0.67687	1	4435	4435		47.657	3.2801	1	9753800	+		70808	30263	49620	49700	77213	77213					0.05818022231278519
RVENEWDAFS	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))RVENEWDAFS_					1	0	0			REV__ENST00000502453.1_1_5:32599047-32599089:+|nuORF	REV__ENST00000502453.1_1_5:32599047-32599089:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	647.7861938476562	2	647.788566	1293.56258	-0.93768	-0.00060742	-3.5551	-0.002303	-4.4928	-0.0029104	647.7862602949456	49.406	0.77726	49.48	49.204	49.982	0.074196					57	20	4	0	0	0	1.0344	1	5036	5036		41.427	13.345	1	3048300	+		70809	33928	49621	49701	77214	77214					-0.07245873092551847
RVEQPHLPKV	10	Unmodified	_RVEQPHLPKV_					0	0	0			REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF	REV__ENST00000349830.7_1_8:1806140-1808128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.5718688964844	3	401.571657	1201.69314	-1.2093	-0.00048561	1.6447	0.00066046	0.43541	0.00017485	401.5722300164285	33.322	1.3812	33.156	32.679	34.06	-0.16565					87	34	4	0	0	0	1.0447	1	2365	2365		40.058	1.3441	1	1890600	+		70810	30728	49622	49702	77215	77215					0.10036187416926623
RVERARGPPL	10	Unmodified	_RVERARGPPL_					0	0	0		ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8434448242188	2	575.843813	1149.67307	-0.26488	-0.00015253	-1.2073	-0.00069524	-1.4722	-0.00084777	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0992	1	11405	11405		32.812	2.3088	1	4946400			70811	3789	49623	49703	77216	77216					0.10422436476983421
RVERARGPPL	10	Unmodified	_RVERARGPPL_					0	0	0		ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8428955078125	2	575.843813	1149.67307	0.019504	1.1231E-05	-1.5007	-0.00086416	-1.4812	-0.00085293	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0992	2	11262	11071;11262		32.812	0	1	5880000			70812	3789	49623	49703	77217;77218	77218					0.10422436476983421
RVERPVSA	8	Unmodified	_RVERPVSA_					0	0	0			REV__ENST00000407249.7_2_1:1571826-1572125:-|nuORF	REV__ENST00000407249.7_2_1:1571826-1572125:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.26409912109375	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0239	1	9932	9932		33.516	1.5607	1	3503800	+		70813	31933	49624	49704	77219	77219					0.05435722848858404
RVEWLPRS	8	Unmodified	_RVEWLPRS_					0	0	0			REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|7|1|sense	REV__SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|7|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7911376953125	2	521.793258	1041.57196	-0.11657	-6.0827E-05	-4.3979	-0.0022948	-4.5145	-0.0023556	521.7910647563884	21.201	1.4047	21.272	20.91	22.314	0.071487					84	28	8	0	0	0	0.89627	1	604	604		51.335	0	1	2356100	+		70814	37633	49625	49705	77220	77220					0.05283984774268902
RVFEDESGKHW	11	Unmodified	_RVFEDESGKHW_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF;DTD1-RALGAPA2|1|fusion	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.8898010253906	3	463.889714	1388.64731	-0.31935	-0.00014814	-0.013328	-6.1826E-06	-0.33268	-0.00015433	463.88969711130846	35.527	0.65377	35.312	34.987	35.641	-0.21555					58	16	4	0	0	0	0.19135	3	2711	2690;2699;2711		100.09	70.535	1	3619900			70815	675	49626	49706	77221;77222;77223	77223					-0.031465025559555215
RVFEDESGKHW	11	Unmodified	_RVFEDESGKHW_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF;DTD1-RALGAPA2|1|fusion	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.8896484375	3	463.889714	1388.64731	-0.43769	-0.00020304	0.11153	5.174E-05	-0.32615	-0.0001513	463.8897337416337	35.393	0.80449	35.18	34.847	35.651	-0.21246					75	20	5	0	0	0	0.26088	4	2693	2671;2681;2693;2705		92.943	39.346	1	3942900			70816	675	49626	49706	77224;77225;77226;77227	77226					-0.031465025559555215
RVFEDESGKHW	11	Unmodified	_RVFEDESGKHW_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF;DTD1-RALGAPA2|1|fusion	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.8895263671875	3	463.889714	1388.64731	-0.54414	-0.00025242	0.056137	2.6041E-05	-0.488	-0.00022638	463.88972029916613	35.322	0.71875	35.136	34.835	35.554	-0.18675					62	18	4	0	0	0	0.3263	4	2670	2645;2656;2670;2683		87.641	52.145	1	3701400			70817	675	49626	49706	77228;77229;77230;77231	77230					-0.031465025559555215
RVFGARGQ	8	Unmodified	_RVFGARGQ_					0	0	0			REV__ENST00000222402.7_1_7:43992537-43992828:+|nuORF	REV__ENST00000222402.7_1_7:43992537-43992828:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	446.7490539550781	2	445.751393	889.488233	-0.19285	-8.5962E-05	-0.15763	-7.0263E-05	-0.35048	-0.00015623	445.7501659201744	33.356	0.19643	33.125	33.036	33.232	-0.23107					7	4	2	0	0	0	0.027866	1	2372	2372		24.203	0	1	28510	+		70818	29355	49627	49707	77232	77232					0.03906873397238542
RVFIYRQPAPM	11	Unmodified	_RVFIYRQPAPM_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.92144775390625	3	459.92018	1376.73871	-0.28218	-0.00012978	2.3264	0.0010699	2.0442	0.00094016	459.9212529193318	24.827	1.0695	24.612	24.377	25.446	-0.2151					56	24	4	0	0	0	0.96926	1	1135	1135		43.651	2.5418	1	1750900			70819	3822	49628	49708	77233	77233					0.06541089607685535
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.3111572265625	2	608.31148	1214.60841	-0.72106	-0.00043863	1.3789	0.00083878	0.65781	0.00040015	608.3119225568256	49.759	0.90329	49.654	49.335	50.238	-0.10558					59	23	4	0	0	0	0.1082	4	5034	5011;5022;5034;5048		134.77	57.448	1	4611400			70820	3509	49629	49709	77234;77235;77236;77237	77236					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	405.876953125	3	405.876746	1214.60841	0.62806	0.00025492	0.18006	7.3084E-05	0.80813	0.000328	405.8766351164306	49.775	0.86691	49.67	49.335	50.202	-0.10558					59	22	4	0	0	0	0.39693	3	5023	5012;5023;5035		99.013	50.411	1	4108100			70821	3509	49629	49709	77238;77239;77240	77239					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.311279296875	2	608.31148	1214.60841	-0.28046	-0.00017061	0.79708	0.00048487	0.51662	0.00031427	608.3115738800079	50.069	1.005	49.789	49.472	50.477	-0.27977					61	26	4	0	0	0	0.074974	4	5057	5046;5057;5069;5083		155.58	78.267	1	4540200			70822	3509	49629	49709	77241;77242;77243;77244	77242					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	405.8770751953125	3	405.876746	1214.60841	0.70463	0.00028599	0.14822	6.0158E-05	0.85285	0.00034615	405.8766307967482	50.104	0.9681	49.824	49.472	50.44	-0.27977					65	25	4	0	0	0	0.39693	2	5065	5053;5065		99.013	51.053	1	3876800			70823	3509	49629	49709	77245;77246	77246					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.31103515625	2	608.31148	1214.60841	0.15223	9.2606E-05	0.6161	0.00037478	0.76833	0.00046739	608.3113278918303	49.892	0.86212	49.712	49.383	50.245	-0.18071					70	22	5	0	0	0	0.025757	3	5023	5023;5033;5045		160.82	93.328	1	4377000			70824	3509	49629	49709	77247;77248;77249	77247					0.009688168803222652
RVFPDKGYSF	10	Unmodified	_RVFPDKGYSF_					0	0	0		ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	405.8768005371094	3	405.876746	1214.60841	0.28252	0.00011467	0.61358	0.00024904	0.8961	0.00036371	405.8768329655077	49.896	0.78844	49.715	49.383	50.172	-0.18071					62	20	4	0	0	0	0.53069	2	5046	5034;5046		84.817	40.203	1	3321300			70825	3509	49629	49709	77250;77251	77251					0.009688168803222652
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF;GTF3C1|p.K2105R|1|0.19|ENSG00000077235|chr16:27461366-27461366|T/C|missense_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.30322265625	2	592.30399	1182.59343	-0.79171	-0.00046893	0.81269	0.00048136	0.020985	1.2429E-05	592.304280745493	49.349	1.0198	49.248	48.841	49.861	-0.1008					75	26	4	0	0	0	0.079716	1	4951	4951		117.81	52.346	1	1740700			70826	1604	49630	49710	77252	77252					0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF;GTF3C1|p.K2105R|1|0.19|ENSG00000077235|chr16:27461366-27461366|T/C|missense_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.3037719726562	2	592.30399	1182.59343	-0.37434	-0.00022172	0.33167	0.00019645	-0.042675	-2.5277E-05	592.3040046173396	49.472	0.90231	49.291	48.961	49.864	-0.18071					67	23	4	0	0	0	0.087669	1	4956	4956		114.89	49.429	1	1939800			70827	1604	49630	49710	77253	77253					0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF;GTF3C1|p.K2105R|1|0.19|ENSG00000077235|chr16:27461366-27461366|T/C|missense_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	592.30399	1182.59343	-0.90055	-0.0005334	-4.0872	-0.0024208	-4.9877	-0.0029542	592.3016293395575	49.478	0.40688	49.478	49.249	49.656	0	0.078353	-0.0043198	NaN	117.81	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203160			70828	1604	49630	49710							0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF;GTF3C1|p.K2105R|1|0.19|ENSG00000077235|chr16:27461366-27461366|T/C|missense_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	592.30399	1182.59343	-0.87938	-0.00052086	-4.1179	-0.002439	-4.9972	-0.0029599	592.3015542682623	49.667	0.52582	49.516	49.292	49.817	-0.1512	0.11623	-0.0043562	NaN	117.81	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212650			70829	1604	49630	49710							0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF;GTF3C1|p.K2105R|1|0.19|ENSG00000077235|chr16:27461366-27461366|T/C|missense_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	592.30399	1182.59343	-1.2282	-0.00072748	-3.4799	-0.0020611	-4.7081	-0.0027886	592.3020127907305	49.372	0.41101	49.446	49.204	49.615	0.074196	0.046843	-0.0036004	NaN	117.81	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224380			70830	1604	49630	49710							0.00943369803007954
RVFPHEVNW	9	Unmodified	_RVFPHEVNW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF;GTF3C1|p.K2105R|1|0.19|ENSG00000077235|chr16:27461366-27461366|T/C|missense_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.30399	1182.59343	-0.73542	-0.00043559	0.76715	0.00045438	0.031724	1.8791E-05	592.3042565626853	49.698	0.90393	49.418	49.049	49.953	-0.27977	0.018533	0.0014307	NaN	117.81	72	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2046200			70831	1604	49630	49710							0.00943369803007954
RVFPLLSSL	9	Unmodified	_RVFPLLSSL_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.818603515625	2	516.316035	1030.61752	0.18735	9.6733E-05	0.85255	0.00044018	1.0399	0.00053692	516.8186612768842	21.481	0.71918	21.303	21.016	21.735	-0.17721					36	14	5	0	0	0	0.62163	1	684	684		51.335	0	1	565270	+		70832	19918	49631	49711	77254	77254					0.1034321023666962
RVFSPTVTK	9	Unmodified	_RVFSPTVTK_					0	0	0			REV__MYO5C|p.R1682T|1|0.16|ENSG00000128833|chr15:52195408-52195408|C/G|missense_variant	REV__MYO5C|p.R1682T|1|0.16|ENSG00000128833|chr15:52195408-52195408|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7808227539062	2	517.803291	1033.59203	-0.78851	-0.0004083	-1.8583	-0.00096226	-2.6469	-0.0013706	517.8020403046371	44.285	0.36665	44.322	44.176	44.542	0.0369					16	10	2	0	0	0	0.024447	1	4184	4184		32.812	0	1	274490	+		70833	36412	49632	49712	77255	77255					0.07657735714224145
RVFSQGSHAW	10	Unmodified	_RVFSQGSHAW_					0	0	0		nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.7916870117188	2	587.791247	1173.56794	-0.28272	-0.00016618	0.31657	0.00018608	0.03385	1.9896E-05	587.7913681611784	37.367	1.0108	37.174	36.851	37.862	-0.193					81	26	4	0	0	0	0.50091	3	2989	2989;2998;3010		88.177	26.928	1	4091200			70834	2555	49633	49713	77256;77257;77258	77256					-0.011901047194214698
RVFSQGSHAW	10	Unmodified	_RVFSQGSHAW_					0	0	0		nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.7911376953125	2	587.791247	1173.56794	-1.7464	-0.0010265	1.7113	0.0010059	-0.03507	-2.0614E-05	587.7921555007524	37.309	0.99617	37.089	36.767	37.763	-0.2195					75	25	5	0	0	0	0.42599	3	2974	2974;2985;2997		96.034	30.568	1	4204300			70835	2555	49633	49713	77259;77260;77261	77259					-0.011901047194214698
RVFSQGSHAW	10	Unmodified	_RVFSQGSHAW_					0	0	0		nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	nc|ENSG00000104228|Q9UPQ4-2|TRIM35	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.7916870117188	2	587.791247	1173.56794	-0.76128	-0.00044747	0.60968	0.00035836	-0.1516	-8.9108E-05	587.7915413266932	37.288	1.0718	37.079	36.765	37.837	-0.2092					79	27	4	0	0	0	0.58878	4	2974	2963;2974;2987;3001		78.264	24.912	1	3597200			70836	2555	49633	49713	77262;77263;77264;77265	77263					-0.011901047194214698
RVFVLVCAFP	10	Unmodified	_RVFVLVCAFP_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8242797851562	2	575.825712	1149.63687	-1.1962	-0.00068883	-2.7781	-0.0015997	-3.9743	-0.0022885	575.8240145752235	44.388	0.67838	44.243	43.883	44.561	-0.14471					68	19	4	0	0	0	1.0541	1	4186	4186		38.806	4.6336	1	5484300			70837	6723	49634	49714	77266	77266					0.06803843255920583
RVFVLVCAFP	10	Unmodified	_RVFVLVCAFP_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.82421875	2	575.825712	1149.63687	-0.77304	-0.00044514	-3.1665	-0.0018233	-3.9395	-0.0022685	575.8237889684899	44.236	0.75821	44.273	43.923	44.681	0.0369					69	21	4	0	0	0	0.68163	1	4123	4123		68.485	17.149	1	5533500			70838	6723	49634	49714	77267	77267					0.06803843255920583
RVGAGLHN	8	Unmodified	_RVGAGLHN_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.23065185546875	2	412.230294	822.446034	0.38571	0.000159	0.30645	0.00012633	0.69216	0.00028533	412.23037967870096	27.434	2.0819	27.434	26.531	28.613	0					138	52	4	0	0	0	1.0574	1	1545	1545		25.45	0	1	8114200			70839	1188	49635	49715	77268	77268					0.02770897988852994
RVGAGLHN	8	Unmodified	_RVGAGLHN_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.230224609375	2	412.230294	822.446034	0.074438	3.0686E-05	0.64002	0.00026383	0.71445	0.00029452	412.23051145257693	27.319	2.4518	27.306	26.415	28.867	-0.012983					153	61	4	0	0	0	1.0239	1	1534	1534		33.516	1.5607	1	6937900			70840	1188	49635	49715	77269	77269					0.02770897988852994
RVGALQRL	8	Unmodified	_RVGALQRL_					0	0	0		ENSG00000099957|ENST00000413302|P2RX6	ENSG00000099957|ENST00000413302|P2RX6	ENSG00000099957|ENST00000413302|P2RX6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7897033691406	2	456.790518	911.566484	4.5209	0.0020651	-4.354	-0.0019889	0.16695	7.626E-05	456.7883742378191	18.232	0.41364	18.295	18.186	18.599	0.063307					14	8	2	0	0	0	1.0239	1	225	225		33.516	5.2613	1	33028			70841	2104	49636	49716	77270	77270					0.10716305982452923
RVGGTGRDTPL	11	Unmodified	_RVGGTGRDTPL_					0	0	0		nc|ENSG00000182177|Q6ZVZ8-2|ASB18;ENSG00000182177|ENST00000409749|ASB18	nc|ENSG00000182177|Q6ZVZ8-2|ASB18	nc|ENSG00000182177|Q6ZVZ8-2|ASB18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.811279296875	2	564.809636	1127.60472	0.60499	0.0003417	1.6225	0.0009164	2.2275	0.0012581	564.8104336485193	107.05	0.6187	107.05	106.81	107.43	0					38	16	3	0	0	0	1.0344	1	13786	13786		29.17	6.5904	1	140810			70842	9109	49637	49717	77271	77271					0.04602147106470511
RVGIHSLSRGL	11	Unmodified	_RVGIHSLSRGL_					0	0	0			REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF	REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8556518554688	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0075	1	11335	11335		35.152	5.982	1	5598500	+		70843	33653	49638	49718	77272	77272					0.11018705648461946
RVGIPKETP	9	Unmodified	_RVGIPKETP_					0	0	0		ENSG00000167315|ENST00000285093|ACAA2;ENST00000419045.1_1_X:48635274-48635379:-|nuORF	ENSG00000167315|ENST00000285093|ACAA2	ENSG00000167315|ENST00000285093|ACAA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7963562011719	2	498.795466	995.57638	-0.0078223	-3.9017E-06	1.3557	0.00067621	1.3479	0.00067231	498.79599799080165	18.107	0.74334	17.9	17.664	18.408	-0.20669					37	14	4	0	0	0	0.80003	1	275	275		39.253	2.0937	1	222430			70844	7671	49639	49719	77273	77273					0.07841449197189831
RVGKKANQV	9	Unmodified	_RVGKKANQV_					0	0	0		L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|53|1|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|53|1|anti-sense	L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|53|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.30572509765625	2	500.306532	998.598512	0.34762	0.00017392	-1.3287	-0.00066478	-0.98112	-0.00049086	500.305823062621	32.879	0.85462	32.942	32.69	33.544	0.062885					38	22	3	0	0	0	0.55828	1	2268	2268		55.504	9.5523	1	2979700			70845	17906	49640	49720	77274	77274					0.09915673665602753
RVGSCWLLQT	10	Unmodified	_RVGSCWLLQT_					0	0	0		ENST00000462744.5_1_1:59787255-59797515:+|nuORF;ENST00000495718.5_1_1:59787216-59811973:+|nuORF	ENST00000462744.5_1_1:59787255-59797515:+|nuORF	ENST00000462744.5_1_1:59787255-59797515:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.8089599609375	2	581.805508	1161.59646	4.953	0.0028817	1.4118	0.0008214	6.3648	0.0037031	581.8061962073949	17.867	0.89192	17.928	17.754	18.646	0.06036					33	19	3	0	0	0	1.1266	1	192	192		29.17	1.2878	1	182640			70846	14717	49641	49721	77275	77275					0.022128768654965825
RVGTFLVTGL	10	Unmodified	_RVGTFLVTGL_					0	0	0			REV__nc|ENSG00000172590|Q86TS9-4|MRPL52	REV__nc|ENSG00000172590|Q86TS9-4|MRPL52	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8170166015625	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.0508	1	10811	10811		39.253	2.8061	1	4853400	+		70847	36942	49642	49722	77276	77276					0.09498308748334239
RVGVAVVN	8	Unmodified	_RVGVAVVN_					0	0	0		ENSG00000114648|ENST00000232766|KLHL18;nc|ENSG00000114648|O94889-2|KLHL18;ENST00000461084.5_1_3:47324437-47378284:+|nuORF	ENSG00000114648|ENST00000232766|KLHL18	ENSG00000114648|ENST00000232766|KLHL18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.2637023925781	2	407.250695	812.486836	0.67312	0.00027413	-4.1649	-0.0016962	-3.4918	-0.001422	407.25040528108013	21.331	0.91006	21.154	20.918	21.828	-0.17721					23	18	2	0	0	0	0.027866	1	659	659		7.6903	0	1	27234			70848	3373	49643	49723	77277	77277					0.07309239308460747
RVGVWGGKI	9	Unmodified	_RVGVWGGKI_					0	0	0		ENST00000298130.4_1_14:34903913-34904003:-|nuORF	ENST00000298130.4_1_14:34903913-34904003:-|nuORF	ENST00000298130.4_1_14:34903913-34904003:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2901916503906	2	486.292894	970.571235	-1.2589	-0.00061219	-4.1602	-0.0020231	-5.419	-0.0026352	486.2909805729049	27.4	2.2661	27.481	27.064	29.33	0.081293					128	57	5	0	0	0	0.55828	1	1450	1450		55.504	4.1688	1	43649000			70849	11871	49644	49724	77278	77278					0.08477190125222478
RVGWGFGL	8	Unmodified	_RVGWGFGL_					0	0	0			REV__ENST00000498141.1_1_15:74630890-74631634:-|nuORF	REV__ENST00000498141.1_1_15:74630890-74631634:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.89642333984375	2	446.245412	890.476272	0.049225	2.1966E-05	-4.1473	-0.0018507	-4.098	-0.0018287	446.24356169259806	24.021	0.49713	24.098	23.912	24.409	0.077583					13	10	2	0	0	0	0.027866	1	965	965		46.766	9.738	1	26940	+		70850	24019	49645	49725	77279	77279					0.02665256654051973
RVHAPLRSH	9	Unmodified	_RVHAPLRSH_					0	0	0			REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.8115844726562	2	536.809774	1071.60499	-0.82253	-0.00044154	0.99196	0.0005325	0.16944	9.0955E-05	536.810161698612	28.967	0.74224	29.048	28.826	29.569	0.080811					47	18	4	0	0	0	0.77768	1	1682	1682		40.778	1.972	1	2267800	+		70851	30684	49646	49726	77280	77280					0.07205611616996066
RVHDYDMRV	9	Oxidation (M)	_RVHDYDM(Oxidation (M))RV_		RVHDYDM(1)RV		RVHDYDM(46)RV	0	0	1		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	402.8611755371094	3	402.86099	1205.56114	0.79963	0.00032214	-0.19258	-7.7582E-05	0.60705	0.00024456	402.86073472845	23.588	1.2285	23.588	23.245	24.474	0					75	28	4	0	0	0	0.7025	1	963	963		45.908	11.986	1	1162400			70852	1763	49647	49727	77281	77281		64			-0.033417856623373154
RVHDYDMRV	9	Oxidation (M)	_RVHDYDM(Oxidation (M))RV_		RVHDYDM(1)RV		RVHDYDM(54)RV	0	0	1		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.8612976074219	3	402.86099	1205.56114	-0.11527	-4.6439E-05	0.72991	0.00029405	0.61464	0.00024761	402.86111175296537	23.592	1.4984	23.532	23.111	24.61	-0.060862					87	34	4	0	0	0	0.58727	3	932	932;946;959		53.597	14.843	1	1072100			70853	1763	49647	49727	77282;77283;77284	77282		64			-0.033417856623373154
RVHFRLVAM	9	Unmodified	_RVHFRLVAM_					0	0	0			REV__ENST00000577537.5_1_17:20790991-20791060:+|nuORF	REV__ENST00000577537.5_1_17:20790991-20791060:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.826904296875	2	564.826578	1127.6386	-0.39505	-0.00022313	2.2939	0.0012956	1.8988	0.0010725	564.8277793573004	31.108	0.63587	30.867	30.585	31.221	-0.24109					42	15	4	0	0	0	0.85941	1	2036	2036		35.201	1.6851	1	1387000	+		70854	35479	49648	49728	77285	77285					0.07988897064524281
RVHKGEKP	8	Unmodified	_RVHKGEKP_					0	0	0		ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	MSMS	OPSCC_39_ClassI_Rep-3	3	475.78094482421875	2	475.780151	949.545748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.06	1	102.06	101.56	102.56	-0.0054474								0	0	0	0.85517	1	12995	12995		30.504	2.6214	1				70855	6774	49649	49729	77286	77286					0.06895715602809105
RVHKISNVNK	10	Unmodified	_RVHKISNVNK_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8562622070312	2	597.856921	1193.69929	-1.5746	-0.00094138	0.53445	0.00031952	-1.0401	-0.00062186	597.8571365403682	103.65	1.17	103.65	103.25	104.42	0					61	27	4	0	0	0	1.089	1	13301	13301		34.173	10.65	1	414000			70856	18075	49650	49730	77287	77287					0.11018705648461946
RVHMNLET	8	Unmodified	_RVHMNLET_					0	0	0			REV__ENST00000506007.1_1_5:94849265-94852339:-|nuORF	REV__ENST00000506007.1_1_5:94849265-94852339:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3059997558594	2	500.255651	998.496749	-0.46845	-0.00023435	2.7679	0.0013847	2.2995	0.0011503	500.2542868972265	32.637	1.5516	32.637	31.869	33.421	0					85	40	5	0	0	0	0.027866	1	2352	2352		63.306	8.53	1	632050	+		70857	34020	49651	49731	77288	77288					-0.00255940748456851
RVHNVQLL	8	Unmodified	_RVHNVQLL_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.7959289550781	2	489.795801	977.577048	-0.37763	-0.00018496	0.21452	0.00010507	-0.16311	-7.9889E-05	489.7957898782809	22.181	0.85308	22.106	21.841	22.694	-0.075296					48	17	4	0	0	0	1.0239	1	767	767		33.516	6.7195	1	1050400	+		70858	25042	49652	49732	77289	77289					0.08736288636896461
RVHPPLPT	8	Unmodified	_RVHPPLPT_					0	0	0			REV__OPA3-EML2|1|fusion	REV__OPA3-EML2|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.7457580566406	2	458.771794	915.529036	-0.085184	-3.908E-05	-3.9235	-0.0018	-4.0087	-0.0018391	458.7698192002223	26.116	0.5742	26.116	25.957	26.531	0					15	13	2	0	0	0	0.027866	1	1361	1361		42.474	11.971	1	159690	+		70859	37303	49653	49733	77290	77290					0.06789214716832248
RVHPVSTMI	9	Oxidation (M)	_RVHPVSTM(Oxidation (M))I_		RVHPVSTM(1)I		RVHPVSTM(100)I	0	0	1		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.286376953125	2	528.286951	1054.55935	-1.5406	-0.00081386	0.96427	0.00050941	-0.57629	-0.00030445	528.2873968863047	31.068	0.75235	31.068	30.717	31.469	0					33	17	2	0	0	0	0.12602	3	2035	2035;2047;2059		104.75	49.242	1	2338300			70860	4786	49654	49734	77291;77292;77293	77291		193			0.03425205319717861
RVHPVSTMI	9	Oxidation (M)	_RVHPVSTM(Oxidation (M))I_		RVHPVSTM(1)I		RVHPVSTM(100)I	0	0	1		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2868041992188	2	528.286951	1054.55935	-1.1099	-0.00058634	0.63019	0.00033292	-0.4797	-0.00025342	528.2871316652432	31.855	1.9274	31.855	31.428	33.356	0					89	49	4	0	0	0	0.14024	1	2247	2247		101.6	35.798	1	1226500			70861	4786	49654	49734	77294	77294		193			0.03425205319717861
RVHPVSTMI	9	Oxidation (M)	_RVHPVSTM(Oxidation (M))I_		RVHPVSTM(1)I		RVHPVSTM(130)I	0	0	1		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.28662109375	2	528.286951	1054.55935	-0.31847	-0.00016824	-0.227	-0.00011992	-0.54547	-0.00028816	528.2867824393439	30.865	0.70817	30.939	30.586	31.294	0.074314					31	16	2	0	0	0	0.057894	3	1956	1956;1968;1982		125.81	60.011	1	2488100			70862	4786	49654	49734	77295;77296;77297	77295		193			0.03425205319717861
RVHPVSTMI	9	Unmodified	_RVHPVSTMI_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2897338867188	2	520.289494	1038.56443	0.56308	0.00029296	-0.9859	-0.00051296	-0.42283	-0.00021999	520.2888594188249	37.252	0.5932	37.252	36.966	37.559	0					37	15	3	0	0	0	0.23085	2	3020	3020;3032		84.916	30.139	1	2067900			70863	4786	49654	49735	77298;77299	77298					0.046695091823494295
RVHPVSTMI	9	Unmodified	_RVHPVSTMI_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2897338867188	2	520.289494	1038.56443	0.12312	6.4059E-05	-0.45499	-0.00023672	-0.33186	-0.00017267	520.2891096100624	37.125	0.66628	37.062	36.749	37.415	-0.063385					44	17	3	0	0	0	0.31037	2	2986	2986;2998		74.255	16.802	1	2143800			70864	4786	49654	49735	77300;77301	77300					0.046695091823494295
RVHPVSTMI	9	Unmodified	_RVHPVSTMI_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2896728515625	2	520.289494	1038.56443	-0.24096	-0.00012537	-0.36228	-0.00018849	-0.60324	-0.00031386	520.2892013603065	37.362	0.67745	37.394	37.074	37.751	0.032269					43	17	3	0	0	0	0.23085	1	2978	2978		84.916	29.411	1	1794200			70865	4786	49654	49735	77302	77302					0.046695091823494295
RVHRGPRP	8	Unmodified	_RVHRGPRP_					0	0	0		ENST00000378052.5_1_7:148991082-148992133:+|nuORF;ENST00000480864.1_1_7:148991400-148992133:+|nuORF;ENST00000476295.5_1_7:148991497-148992133:+|nuORF;ENST00000481519.5_1_7:148990933-148994165:+|nuORF	ENST00000378052.5_1_7:148991082-148992133:+|nuORF	ENST00000378052.5_1_7:148991082-148992133:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7906799316406	2	487.791384	973.568215	0.37956	0.00018514	-1.9536	-0.00095297	-1.5741	-0.00076783	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.0239	1	10124	10124		33.516	0.022601	1	2659000			70866	13224	49655	49736	77303	77303					0.0803735979108069
RVHSGDRPYQ	10	Unmodified	_RVHSGDRPYQ_					0	0	0		ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.8031005859375	2	607.804885	1213.59522	-0.66241	-0.00040262	-4.4544	-0.0027074	-5.1168	-0.00311	607.8022287010161	62.9	1.0368	62.716	62.573	63.61	-0.18386					47	27	2	0	0	0	1.0508	1	7106	7106		39.253	0.49923	1	645340			70867	5980	49656	49737	77304	77304					-0.003036211790458765
RVHTPFESF	9	Unmodified	_RVHTPFESF_					0	0	0		ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.2985229492188	2	560.282723	1118.55089	-1.6843	-0.00094367	-4.1891	-0.0023471	-5.8733	-0.0032907	560.2821967824673	38.486	0.18282	38.513	38.429	38.612	0.027275					6	4	2	0	0	0	0.024263	1	3169	3169		51.335	0	1	64235			70868	1981	49657	49738	77305	77305					-0.003640253252342518
RVHTPVSIQLV	11	Unmodified	_RVHTPVSIQLV_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ADGRG4|p.P1831Kfs*16|1|0.04|ENSG00000156920|chrX:136349195-136349196|-/TAAAGCTAGTCAG|frameshift_variant	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2212829589844	3	416.918945	1247.73501	-0.26986	-0.00011251	-0.23848	-9.9428E-05	-0.50834	-0.00021194	417.2532566935506	24.553	0.41605	24.338	24.134	24.55	-0.2151					12	9	2	0	0	0	0.024743	1	1080	1080		36.318	12.94	1	31818			70869	37	49658	49739	77306	77306					0.12104743105464877
RVIDLRAEL	9	Unmodified	_RVIDLRAEL_					0	0	0		nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB;ENSG00000130254|ENST00000252542|SAFB2;nc|ENSG00000130254|Q14151-2|SAFB2;ENST00000586934.5_1_19:5623180-5651054:+|nuORF	nc|ENSG00000160633|Q15424-2|SAFB;ENST00000586934.5_1_19:5623180-5651054:+|nuORF	nc|ENSG00000160633|Q15424-2|SAFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.82666015625	2	542.827298	1083.64004	-0.57551	-0.0003124	0.19007	0.00010318	-0.38544	-0.00020923	542.8273636640008	53.502	1.2648	53.502	53.196	54.461	0					91	35	4	0	0	0	0.72494	1	5793	5793		44.377	0.26039	1	3500200			70870	4403;17257	49659	49740	77307	77307					0.10156809634258934
RVIDLSEC	8	Unmodified	_RVIDLSEC_					0	0	0		ENST00000496390.5_1_X:153928333-153979808:-|nuORF;nc|ENSG00000160219|Q8WWW8-3|GAB3;nc|ENSG00000160219|Q8WWW8|GAB3;ENSG00000160219|ENST00000424127|GAB3	ENST00000496390.5_1_X:153928333-153979808:-|nuORF	ENST00000496390.5_1_X:153928333-153979808:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7386779785156	2	467.73676	933.458967	-0.14765	-6.9063E-05	3.9244	0.0018356	3.7767	0.0017665	467.73845371690464	26.103	2.2243	25.935	25.544	27.768	-0.16816					126	56	4	0	0	0	0.77775	1	1319	1319		60.972	7.6205	1	4720200			70871	6794	49660	49741	77308	77308					-0.010424517339288286
RVIDVGSEW	9	Unmodified	_RVIDVGSEW_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.7738037109375	2	530.774731	1059.53491	-0.60445	-0.00032083	1.7664	0.00093754	1.1619	0.00061672	530.7758721473413	57.055	0.88904	56.888	56.676	57.565	-0.1672					59	23	4	0	0	0	0.062622	2	6228	6215;6228		124.08	49.825	1	22374000			70872	5178	49661	49742	77309;77310	77310					0.0075226843787277176
RVIDVGSEW	9	Unmodified	_RVIDVGSEW_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.7744140625	2	530.774731	1059.53491	-0.19492	-0.00010346	2.0159	0.00107	1.821	0.00096654	530.776061142773	57.075	0.7243	56.873	56.783	57.508	-0.20209					34	19	2	0	0	0	0.062622	2	6232	6220;6232		124.08	39.165	1	27927000			70873	5178	49661	49742	77311;77312	77312					0.0075226843787277176
RVIDVGSEW	9	Unmodified	_RVIDVGSEW_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B;ENST00000494819.5_1_1:89324456-89357188:-|nuORF	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.7747192382812	2	530.774731	1059.53491	-0.21036	-0.00011165	1.3912	0.00073841	1.1808	0.00062676	530.7756577793249	57.167	0.78091	56.943	56.851	57.632	-0.2248					34	20	2	0	0	0	0.094442	2	6219	6219;6232		112.41	38.156	1	24125000			70874	5178	49661	49742	77313;77314	77313					0.0075226843787277176
RVIDYAVKI	9	Unmodified	_RVIDYAVKI_					0	0	0		ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8239135742188	2	538.826766	1075.63898	-0.47024	-0.00025338	-0.34306	-0.00018485	-0.8133	-0.00043823	538.8264313665431	50.97	1.2592	50.97	50.341	51.6	0					92	35	4	0	0	0	0.053401	2	5374	5374;5387		127.46	56.166	1	5143700			70875	2665	49662	49743	77315;77316	77315					0.1041859526535518
RVIDYAVKI	9	Unmodified	_RVIDYAVKI_					0	0	0		ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.823974609375	2	538.826766	1075.63898	-0.80996	-0.00043643	-0.25016	-0.00013479	-1.0601	-0.00057122	538.8264797162481	51.139	1.2531	50.99	50.322	51.575	-0.14916					99	35	4	0	0	0	0.094442	1	5380	5380		112.41	38.156	1	6170800			70876	2665	49662	49743	77317	77317					0.1041859526535518
RVIDYILDL	9	Unmodified	_RVIDYILDL_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MSMS	OPSCC_39_ClassI_Rep-2	2	560.3240966796875	2	560.324057	1118.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.313	1	83.222	82.722	83.722	-0.090454								0	0	0	0.13281	1	10380	10380		85.161	5.4482	1				70877	3621	49663	49744	77318	77318					0.07898871682914432
RVIDYILDL	9	Unmodified	_RVIDYILDL_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3234252929688	2	560.324057	1118.63356	-0.83025	-0.00046521	0.96006	0.00053795	0.12981	7.2735E-05	560.3243839051638	83.229	1.538	83.256	82.96	84.498	0.026558					88	35	4	0	0	0	0.34489	1	10321	10321		69.628	3.8245	1	900510			70878	3621	49663	49744	77319	77319					0.07898871682914432
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2929382324219	2	508.292756	1014.57096	-0.54221	-0.0002756	-0.05573	-2.8327E-05	-0.59794	-0.00030393	508.2927684758475	50.529	0.96797	50.529	50.21	51.178	0					94	27	5	0	0	0	0.016758	7	5323	5275;5287;5299;5311;5323;5336;5351		153.04	36.132	1	45051000			70879	2196	49664	49745	77320;77321;77322;77323;77324;77325;77326	77324					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.29248046875	2	508.292756	1014.57096	-0.18694	-9.5019E-05	-0.37358	-0.00018989	-0.56052	-0.00028491	508.2926224436215	50.758	0.86573	50.609	50.289	51.155	-0.14916					93	24	5	0	0	0	0.016758	6	5317	5282;5305;5317;5329;5342;5355		153.04	48.289	1	59201000			70880	2196	49664	49745	77327;77328;77329;77330;77331;77332	77329					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2929382324219	2	508.292756	1014.57096	-0.18492	-9.3995E-05	-0.28081	-0.00014273	-0.46573	-0.00023673	508.2926832659402	50.447	0.92987	50.528	50.18	51.11	0.08099					93	26	5	0	0	0	0.015901	7	5212	5189;5200;5212;5224;5236;5248;5262		157.33	40.425	1	48444000			70881	2196	49664	49745	77333;77334;77335;77336;77337;77338;77339	77335					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.29217529296875	2	508.292756	1014.57096	0.18823	9.5678E-05	-0.084558	-4.298E-05	0.10368	5.2698E-05	508.29252354828037	50.549	1.0472	50.438	50.082	51.129	-0.11163					89	27	6	0	0	0	0.027092	3	5153	5141;5153;5165		143.89	30.475	1	7647100			70882	2196	49664	49745	77340;77341;77342	77341					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.29278564453125	2	508.292756	1014.57096	0.11738	5.9661E-05	0.10095	5.1311E-05	0.21832	0.00011097	508.29257982227136	50.836	1.0119	50.56	50.262	51.274	-0.27643					65	26	4	0	0	0	0.027092	5	5195	5161;5172;5182;5195;5208		143.89	42.286	1	7988800			70883	2196	49664	49745	77343;77344;77345;77346;77347	77346					0.06425725614724342
RVIGTLEEV	9	Unmodified	_RVIGTLEEV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.292236328125	2	508.292756	1014.57096	0.18375	9.3396E-05	-0.32405	-0.00016471	-0.14031	-7.1318E-05	508.29251372346397	50.695	0.85702	50.514	50.245	51.102	-0.18071					39	22	2	0	0	0	0.086035	4	5159	5148;5159;5170;5188		115.49	18.498	1	8937100			70884	2196	49664	49745	77348;77349;77350;77351	77349					0.06425725614724342
RVIIPFSGW	9	Unmodified	_RVIIPFSGW_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.8079223632812	2	537.808377	1073.6022	-0.16248	-8.7383E-05	-0.43451	-0.00023368	-0.59699	-0.00032107	537.8079149315921	77.596	2.3185	77.334	77.028	79.346	-0.26202					125	54	4	0	0	0	0.091713	3	9223	9211;9223;9235		113.41	40.039	1	13097000			70885	18093	49665	49746	77352;77353;77354	77353					0.06834343439481927
RVIIPFSGW	9	Unmodified	_RVIIPFSGW_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.80810546875	2	537.808377	1073.6022	0.55009	0.00029584	-0.90291	-0.00048559	-0.35282	-0.00018975	537.807705077701	77.537	2.2389	77.295	76.982	79.221	-0.24232					127	53	4	0	0	0	0.26966	2	9237	9226;9237		79.713	22.992	1	12111000			70886	18093	49665	49746	77355;77356	77356					0.06834343439481927
RVIIPFSGW	9	Unmodified	_RVIIPFSGW_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.80859375	2	537.808377	1073.6022	-1.0166	-0.00054673	1.0403	0.00055949	0.023717	1.2755E-05	537.8087962569283	77.423	2.028	77.261	76.986	79.014	-0.16196					120	47	4	0	0	0	0.17822	2	9192	9192;9204		93.195	37.018	1	9094900			70887	18093	49665	49746	77357;77358	77357					0.06834343439481927
RVIKAMNNS	9	Oxidation (M)	_RVIKAM(Oxidation (M))NNS_		RVIKAM(1)NNS		RVIKAM(51)NNS	0	0	1		nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000256977|P0CW19-2|LIMS3	nc|ENSG00000256977|P0CW19-2|LIMS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7819213867188	2	524.782033	1047.54951	-1.4161	-0.00074312	1.43	0.00075044	0.01395	7.3208E-06	524.7826053486111	28.059	0.55356	28.059	27.765	28.318	0					46	13	4	0	0	0	0.62163	1	1605	1605		51.335	7.2187	1	1310400			70888	7971	49666	49747	77359	77359		334			0.027640173143254287
RVIKFPVNKI	10	Unmodified	_RVIKFPVNKI_					0	0	0			REV__ENSG00000113013|ENST00000297185|HSPA9	REV__ENSG00000113013|ENST00000297185|HSPA9	MSMS	OPSCC_40_ClassI_Rep-2	5	405.2637939453125	3	405.264164	1212.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.14	1	114	113.5	114.5	-0.14448								0	0	0	0.77833	1	13716	13716		7.3997	0	1		+		70889	22037	49667	49748	77360	77360					0.17278825353128013
RVIKLILLH	9	Unmodified	_RVIKLILLH_					0	0	0		ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant;nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19	ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	ADAMTS19|p.G813Rfs*15|1|0.5|ENSG00000145808|chr5:129665527-129665528|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.8291625976562	2	552.884419	1103.75428	-0.69198	-0.00038259	4.0762	0.0022537	3.3842	0.0018711	552.8868158331416	49.105	0.1777	48.952	48.792	48.97	-0.15277					7	4	2	0	0	0	0.024541	1	5023	5023		24.203	5.8783	1	109500			70890	27	49668	49749	77361	77361					0.20655744187024538
RVIKRNGE	8	Unmodified	_RVIKRNGE_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2905578613281	2	486.290882	970.567212	-1.2589	-0.00061219	-0.024018	-1.1679E-05	-1.2829	-0.00062387	486.2909805729049	27.4	2.2661	27.481	27.064	29.33	0.081293					128	57	5	0	0	0	0.94504	1	1418	1418		45.972	3.5761	1	43649000	+		70891	34459	49669	49750	77362	77362					0.08075100631515397
RVIKSLQV	8	Unmodified	_RVIKSLQV_					0	0	0		ENPP3|p.A341S|1|0.68|ENSG00000154269|chr6:131683063-131683063|G/T|missense_variant	ENPP3|p.A341S|1|0.68|ENSG00000154269|chr6:131683063-131683063|G/T|missense_variant	ENPP3|p.A341S|1|0.68|ENSG00000154269|chr6:131683063-131683063|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.8084716796875	2	471.808377	941.6022	0.65627	0.00030963	-0.63977	-0.00030185	0.016498	7.7838E-06	471.80798184376744	40.57	1.0797	40.57	40.281	41.36	0					76	30	4	0	0	0	0.27973	1	3604	3604		120.62	7.2094	1	8176800			70892	709	49670	49751	77363	77363					0.12906343439465218
RVIKSLQV	8	Unmodified	_RVIKSLQV_					0	0	0		ENPP3|p.A341S|1|0.68|ENSG00000154269|chr6:131683063-131683063|G/T|missense_variant	ENPP3|p.A341S|1|0.68|ENSG00000154269|chr6:131683063-131683063|G/T|missense_variant	ENPP3|p.A341S|1|0.68|ENSG00000154269|chr6:131683063-131683063|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.80859375	2	471.808377	941.6022	1.222	0.00057656	-1.1925	-0.00056262	0.029547	1.3941E-05	471.80772834128663	40.691	1.3073	40.568	40.267	41.574	-0.12318					85	36	4	0	0	0	0.47665	2	3611	3596;3611		87.754	8.3033	1	7885700			70893	709	49670	49751	77364;77365	77365					0.12906343439465218
RVIKSSYIYNL	11	Unmodified	_RVIKSSYIYNL_					0	0	0			REV__ENSG00000177485|ENST00000557385|ZBTB33	REV__ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2301025390625	3	452.594238	1354.76089	-0.24433	-0.00011058	-2.2467	-0.0010168	-2.491	-0.0011274	452.92780478553436	26.717	0.24918	26.694	26.486	26.735	-0.023088					6	5	2	0	0	0	0.024747	1	1377	1377		47.228	12.049	1	24671	+		70894	27119	49671	49752	77366	77366					0.09769592557108808
RVILSASITL	10	Unmodified	_RVILSASITL_					0	0	0		ENSG00000249242|ENST00000449862|TMEM150C	ENSG00000249242|ENST00000449862|TMEM150C	ENSG00000249242|ENST00000449862|TMEM150C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8115844726562	2	536.839874	1071.66519	-1.0015	-0.00053765	0.27797	0.00014922	-0.72353	-0.00038842	536.8398247610352	29.143	0.55029	29.222	29.016	29.566	0.078344					30	13	3	0	0	0	0.03519	1	1682	1682		26.693	5.746	1	397960			70895	10838	49672	49753	77367	77367					0.13222864436852433
RVINEEYKIW	10	Unmodified	_RVINEEYKIW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7792663574219	3	450.578588	1348.71394	-0.32209	-0.00014513	-0.11891	-5.3579E-05	-0.441	-0.00019871	450.5784673923426	54.302	0.91254	54.166	53.897	54.81	-0.13617					74	25	4	0	0	0	0.03519	1	5766	5766		79.489	49.35	1	2656600			70896	6950	49673	49754	77368	77368					0.05352733005929622
RVINEEYKIW	10	Unmodified	_RVINEEYKIW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.77923583984375	3	450.578588	1348.71394	-0.012057	-5.4326E-06	-0.28675	-0.0001292	-0.29881	-0.00013464	450.5783947575726	54.438	0.99211	54.193	53.92	54.912	-0.2453					74	28	4	0	0	0	0.03519	1	5784	5784		47.228	7.1695	1	2469100			70897	6950	49673	49754	77369	77369					0.05352733005929622
RVINEEYKIW	10	Unmodified	_RVINEEYKIW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7790222167969	3	450.578588	1348.71394	0.44172	0.00019903	-0.75961	-0.00034227	-0.3179	-0.00014324	450.5781339346654	54.367	1.0601	54.165	53.885	54.945	-0.20214					66	28	4	0	0	0	0.03519	1	5779	5779		48.602	21.852	1	1637600			70898	6950	49673	49754	77370	77370					0.05352733005929622
RVIPKGII	8	Unmodified	_RVIPKGII_					0	0	0		nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000392846.7_1_19:15989583-16003262:-|nuORF	nc|ENSG00000186529|Q08477-2|CYP4F3	nc|ENSG00000186529|Q08477-2|CYP4F3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.25390625	2	448.308013	894.601472	-1.1932	-0.0005349	0.70645	0.00031671	-0.4867	-0.00021819	448.3081376179265	49.111	0.54819	49.186	48.842	49.391	0.074196					21	14	2	0	0	0	0.027866	1	4986	4986		12.959	0	1	188320			70899	9559	49674	49755	77371	77371					0.14995548790420798
RVIPLPSKELM	11	Unmodified	_RVIPLPSKELM_					0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8829956054688	2	641.881216	1281.74788	0.89146	0.00057221	0.96967	0.00062241	1.8611	0.0011946	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	1.0392	1	12270	12270		28.081	0	1	2810000	+		70900	19902	49675	49756	77372	77372					0.11827438173349947
RVIPLPSKELM	11	Unmodified	_RVIPLPSKELM_					0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8823852539062	2	641.881216	1281.74788	0.76256	0.00048947	1.1025	0.00070767	1.8651	0.0011971	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0557	1	11975	11975		23.523	0	1	3421300	+		70901	19902	49675	49756	77373	77373					0.11827438173349947
RVIQPPTTY	9	Unmodified	_RVIQPPTTY_					0	0	0		ENST00000433425.3_2_X:134230016-134230136:-|nuORF	ENST00000433425.3_2_X:134230016-134230136:-|nuORF	ENST00000433425.3_2_X:134230016-134230136:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.8006591796875	2	537.800749	1073.58694	4.6271	0.0024885	-3.8322	-0.002061	0.79489	0.00042749	537.7985595209067	17.015	0.35475	17.073	16.929	17.284	0.057352					19	12	2	0	0	0	0.6504	1	95	95		49.442	21.559	1	43341			70902	14223	49676	49757	77374	77374					0.0530943185160595
RVIQPPTTY	9	Unmodified	_RVIQPPTTY_					0	0	0		ENST00000433425.3_2_X:134230016-134230136:-|nuORF	ENST00000433425.3_2_X:134230016-134230136:-|nuORF	ENST00000433425.3_2_X:134230016-134230136:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	537.800749	1073.58694	3.0172	0.0016227	-2.2579	-0.0012143	0.75934	0.00040837	537.7994018987226	16.928	0.35872	16.928	16.842	17.201	0	-0.040794	0.00059897	NaN	49.442	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46086			70903	14223	49676	49757							0.0530943185160595
RVISGHLGW	9	Unmodified	_RVISGHLGW_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7881469726562	2	512.787976	1023.5614	-0.85074	-0.00043625	0.21782	0.00011169	-0.63292	-0.00032455	512.7879931066898	45.024	0.82993	44.924	44.594	45.424	-0.099445					61	22	4	0	0	0	0.80003	1	4249	4249		39.253	3.6345	1	3251300			70904	8173	49677	49758	77375	77375					0.05056002119840741
RVISGHLGW	9	Unmodified	_RVISGHLGW_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7882690429688	2	512.787976	1023.5614	-0.32261	-0.00016543	-0.30355	-0.00015566	-0.62616	-0.00032109	512.7877553476926	45.213	0.85989	44.96	44.67	45.53	-0.25252					60	23	4	0	0	0	0.48817	2	4266	4255;4266		60.118	5.3419	1	3688600			70905	8173	49677	49758	77376;77377	77377					0.05056002119840741
RVISGHLGW	9	Unmodified	_RVISGHLGW_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7874145507812	2	512.787976	1023.5614	-0.42265	-0.00021673	-0.063507	-3.2566E-05	-0.48616	-0.0002493	512.7877733316221	45.181	0.70532	44.97	44.677	45.382	-0.21109					54	19	4	0	0	0	0.56934	2	4261	4246;4261		54.776	12.302	1	3564800			70906	8173	49677	49758	77378;77379	77379					0.05056002119840741
RVISYLDQL	9	Unmodified	_RVISYLDQL_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8138427734375	2	553.813856	1105.61316	0.029142	1.6139E-05	0.0674	3.7327E-05	0.096542	5.3466E-05	553.8138096486558	58.48	0.80201	58.292	58.023	58.825	-0.18787					33	19	3	0	0	0	0.6504	1	6451	6451		49.442	1.7842	1	4929500	+		70907	36998	49678	49759	77380	77380					0.06457701023077789
RVITVPAMLG	10	Oxidation (M)	_RVITVPAM(Oxidation (M))LG_		RVITVPAM(1)LG		RVITVPAM(61)LG	0	0	1		ENSG00000047936|ENST00000368507|ROS1	ENSG00000047936|ENST00000368507|ROS1	ENSG00000047936|ENST00000368507|ROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.8126831054688	2	536.812802	1071.61105	-1.6497	-0.00088557	-2.4653	-0.0013234	-4.115	-0.002209	536.811315926085	29.183	0.74205	29.183	28.99	29.732	0					46	18	4	0	0	0	0.79525	1	1773	1773		60.972	9.7792	1	2348400			70908	1112	49679	49760	77381	77381		34			0.07810949013628488
RVIVRVDS	8	Unmodified	_RVIVRVDS_					0	0	0			REV__DTD1-RALGAPA2|1|fusion	REV__DTD1-RALGAPA2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2881164550781	2	472.287808	942.561064	-0.48925	-0.00023107	0.00055468	2.6197E-07	-0.4887	-0.00023081	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.0574	1	11722	11722		26.796	0	1	45907000	+		70909	19715	49680	49761	77382	77382					0.0874858239999412
RVIWGRAR	8	Unmodified	_RVIWGRAR_					0	0	0		ENST00000520704.1_1_8:43028977-43029178:+|nuORF	ENST00000520704.1_1_8:43028977-43029178:+|nuORF	ENST00000520704.1_1_8:43028977-43029178:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.26885986328125	2	507.30941	1012.60427	-0.45781	-0.00023225	1.1757	0.00059642	0.71784	0.00036417	507.3099340378683	45.233	0.34945	44.98	44.67	45.019	-0.25252					12	8	2	0	0	0	0.027866	1	4230	4230		18.324	0	1	98802			70910	15990	49681	49762	77383	77383					0.09846816967933592
RVIWGRAR	8	Unmodified	_RVIWGRAR_					0	0	0		ENST00000520704.1_1_8:43028977-43029178:+|nuORF	ENST00000520704.1_1_8:43028977-43029178:+|nuORF	ENST00000520704.1_1_8:43028977-43029178:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.26904296875	2	507.30941	1012.60427	-0.58665	-0.00029761	0.6707	0.00034025	0.084054	4.2641E-05	507.3093829577495	45.135	0.34113	44.924	44.715	45.056	-0.21109					13	8	2	0	0	0	0.027866	1	4224	4224		38.806	9.6566	1	93742			70911	15990	49681	49762	77384	77384					0.09846816967933592
RVKAPAKP	8	Unmodified	_RVKAPAKP_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5;PLEKHG5|p.E613Kfs*6|1|0.31|ENSG00000171680|chr1:6470517-6470517|C/-|frameshift_variant	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.2866516113281	2	433.782162	865.549771	0.18316	7.9451E-05	-2.8291	-0.0012272	-2.6459	-0.0011478	433.78117167510896	52.874	1.8001	52.969	51.971	53.771	0.095669					69	47	2	0	0	0	0.027866	1	5512	5512		8.2313	0	1	163570			70912	8181	49682	49763	77385	77385					0.11161805096503485
RVKCFLLF	8	Unmodified	_RVKCFLLF_					0	0	0			REV__nc|ENSG00000120925|Q96K19-2|RNF170	REV__nc|ENSG00000120925|Q96K19-2|RNF170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.837158203125	2	513.301873	1024.58919	-0.049914	-2.5621E-05	2.085	0.0010702	2.0351	0.0010446	513.3028870263158	68.478	0.56175	68.497	68.237	68.799	0.018913					19	14	2	0	0	0	0.027866	1	8117	8117		42.474	0	1	131920	+		70913	34494	49683	49764	77386	77386					0.07788189055713701
RVKDESFEI	9	Unmodified	_RVKDESFEI_					0	0	0			REV__ENSG00000137221|ENST00000372449|TJAP1	REV__ENSG00000137221|ENST00000372449|TJAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.3137817382812	2	561.793121	1121.57169	0.48898	0.0002747	-0.068606	-3.8542E-05	0.42037	0.00023616	561.7931685536661	70.478	0.34037	70.478	70.316	70.656	0					12	7	2	0	0	0	0.024292	1	8531	8531		58.782	9.3404	1	207160	+		70914	23738	49684	49765	77387	77387					0.0157652026375672
RVKDESFEI	9	Unmodified	_RVKDESFEI_					0	0	0			REV__ENSG00000137221|ENST00000372449|TJAP1	REV__ENSG00000137221|ENST00000372449|TJAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.793121	1121.57169	-0.015232	-8.5572E-06	4.7712	0.0026804	4.756	0.0026719	561.7958696382157	71.127	0.38286	70.869	70.739	71.122	-0.25713	0.2309	0.0051778	NaN	49.442	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83183	+		70915	23738	49684	49765							0.0157652026375672
RVKDLESLF	9	Unmodified	_RVKDLESLF_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.81396484375	2	553.813856	1105.61316	-0.19194	-0.0001063	-0.49863	-0.00027615	-0.69058	-0.00038245	553.8137362648407	58.618	0.84799	58.431	58.05	58.898	-0.18795					38	20	3	0	0	0	0.15366	2	6445	6433;6445		98.629	7.8527	1	4971900			70916	8653	49685	49766	77388;77389	77389					0.06457701023077789
RVKDLESLF	9	Unmodified	_RVKDLESLF_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.814208984375	2	553.813856	1105.61316	0.029142	1.6139E-05	0.0674	3.7327E-05	0.096542	5.3466E-05	553.8138096486558	58.48	0.80201	58.292	58.023	58.825	-0.18787					33	19	3	0	0	0	0.19099	1	6424	6424		90.37	2.6155	1	4929500			70917	8653	49685	49766	77390	77390					0.06457701023077789
RVKDLESLF	9	Unmodified	_RVKDLESLF_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.813720703125	2	553.813856	1105.61316	0.52752	0.00029215	-1.9018	-0.0010532	-1.3742	-0.00076107	553.8133546303059	58.624	0.93033	58.382	58.086	59.017	-0.24165					71	22	5	0	0	0	0.28753	1	6433	6433		77.318	2.801	1	6364900			70918	8653	49685	49766	77391	77391					0.06457701023077789
RVKGKKKK	8	Unmodified	_RVKGKKKK_					0	0	0			REV__ENST00000563394.1_1_17:42300629-42300752:+|nuORF	REV__ENST00000563394.1_1_17:42300629-42300752:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29022216796875	2	486.345461	970.676368	-1.314	-0.00063905	1.4546	0.00070746	0.14065	6.8406E-05	486.34519112068364	27.355	0.21438	27.436	27.319	27.534	0.081293					9	5	3	0	0	0	0.027866	1	1438	1438		12.959	0	1	77962	+		70919	35224	49686	49767	77392	77392					0.1898573132165211
RVKGLVESN	9	Unmodified	_RVKGLVESN_					0	0	0			REV__ENST00000552391.1_1_12:49424296-49425140:-|nuORF	REV__ENST00000552391.1_1_12:49424296-49425140:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2903137207031	2	501.290548	1000.56654	0.66235	0.00033203	-0.83167	-0.00041691	-0.16932	-8.4879E-05	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	0.89441	1	10100	10100		32.812	1.2826	1	3151900	+		70920	34950	49687	49768	77393	77393					0.06628261191804086
RVKGLVESN	9	Unmodified	_RVKGLVESN_					0	0	0			REV__ENST00000552391.1_1_12:49424296-49425140:-|nuORF	REV__ENST00000552391.1_1_12:49424296-49425140:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2903747558594	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.87448	1	10327	10327		34.173	2.6427	1	10557000	+		70921	34950	49687	49768	77394	77394					0.06628261191804086
RVKGLVESN	9	Unmodified	_RVKGLVESN_					0	0	0			REV__ENST00000552391.1_1_12:49424296-49425140:-|nuORF	REV__ENST00000552391.1_1_12:49424296-49425140:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2903137207031	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.80003	2	10306	10306;10353		39.253	2.8061	1	10571000	+		70922	34950	49687	49768	77395;77396	77395					0.06628261191804086
RVKKAQLPD	9	Unmodified	_RVKKAQLPD_					0	0	0			REV__nc|ENSG00000140262|Q99081|TCF12	REV__nc|ENSG00000140262|Q99081|TCF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.8223266601562	2	527.822015	1053.62948	-0.86951	-0.00045895	0.31847	0.0001681	-0.55104	-0.00029085	527.8221432543394	32.709	0.70959	32.721	32.45	33.16	0.011795					54	18	4	0	0	0	0.75397	1	2272	2272		42.396	0.96952	1	2471800	+		70923	36715	49688	49769	77397	77397					0.10480826979846825
RVKKGFDFQW	10	Unmodified	_RVKKGFDFQW_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.5715637207031	3	437.571657	1309.69314	-0.97517	-0.00042671	0.83827	0.0003668	-0.1369	-5.9904E-05	437.57194938781754	48.775	1.4619	48.675	48.288	49.75	-0.1008					87	38	4	0	0	0	0.811	2	4868	4868;4879		59.931	14.023	1	2530400			70924	756	49689	49770	77398;77399	77398					0.05068187416941328
RVKKGFDFQW	10	Unmodified	_RVKKGFDFQW_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.5714111328125	3	437.571657	1309.69314	-0.32526	-0.00014233	0.10061	4.4025E-05	-0.22465	-9.83E-05	437.5716427893055	49.169	1.0824	48.889	48.575	49.657	-0.27977					80	28	4	0	0	0	0.83648	1	4921	4921		58.246	13.607	1	2266400			70925	756	49689	49770	77400	77400					0.05068187416941328
RVKKSGVSV	9	Unmodified	_RVKKSGVSV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.30340576171875	2	480.303458	958.592364	3.1006	0.0014893	-3.0535	-0.0014666	0.047144	2.2643E-05	480.3018188887274	18.309	0.4896	18.309	18.136	18.626	0					18	9	3	0	0	0	0.75397	1	276	276		42.396	5.3677	1	205670			70926	1536	49690	49771	77401	77401					0.11141155434097527
RVKKSGVSV	9	Unmodified	_RVKKSGVSV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.3031311035156	2	480.303458	958.592364	0.34671	0.00016653	-0.24764	-0.00011894	0.099068	4.7583E-05	480.3031236248588	18.492	0.53994	18.36	18.154	18.694	-0.13148					21	10	3	0	0	0	0.69446	1	285	285		46.457	7.2039	1	183310			70927	1536	49690	49771	77402	77402					0.11141155434097527
RVKKSGVSV	9	Unmodified	_RVKKSGVSV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.30322265625	2	480.303458	958.592364	3.8992	0.0018728	-3.9672	-0.0019055	-0.067997	-3.2659E-05	480.3014075401704	18.475	0.58937	18.539	18.353	18.942	0.063307					20	11	2	0	0	0	0.80003	1	257	257		39.253	5.7372	1	171730			70928	1536	49690	49771	77403	77403					0.11141155434097527
RVKLMMSSL	9	Unmodified	_RVKLMMSSL_					0	0	0			REV__ENST00000557386.5_1_14:69584939-69588960:-|nuORF	REV__ENST00000557386.5_1_14:69584939-69588960:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7561645507812	2	532.80138	1063.58821	-0.84839	-0.00045202	3.6705	0.0019557	2.8221	0.0015036	532.8029553798109	60.569	0.5308	60.316	60.092	60.623	-0.25373					13	12	2	0	0	0	0.024381	1	6735	6735		37.159	6.8414	1	56767	+		70929	35068	49691	49772	77404	77404					0.05895606624540051
RVKNKGTNI	9	Unmodified	_RVKNKGTNI_					0	0	0			REV__ENSG00000153317|ENST00000518721|ASAP1	REV__ENSG00000153317|ENST00000518721|ASAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.3125	2	515.311815	1028.60908	3.2301	0.0016645	-3.0839	-0.0015891	0.14627	7.5375E-05	515.3098120592111	17.721	0.63785	17.721	17.498	18.136	0					32	12	6	0	0	0	0.50848	1	204	204		58.782	7.4465	1	778580	+		70930	24900	49692	49773	77405	77405					0.09591656320048969
RVKPGDVAV	9	Unmodified	_RVKPGDVAV_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MSMS	OPSCC_39_ClassI_Rep-1	1	470.7821044921875	2	470.782359	939.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.446	1	29.446	28.946	29.946	0								0	0	0	0.13392	1	1807	1807		84.916	31.564	1				70931	6043	49693	49774	77406	77406					0.07797180025715988
RVKPGDVAV	9	Unmodified	_RVKPGDVAV_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.78228759765625	2	470.782359	939.550165	-0.19724	-9.2855E-05	0.17844	8.4008E-05	-0.018792	-8.8472E-06	470.7823222053741	29.369	0.82692	29.372	29.129	29.956	0.0031357					52	20	5	0	0	0	0.31037	2	1787	1787;1797		74.255	15.094	1	2378100			70932	6043	49693	49774	77407;77408	77407					0.07797180025715988
RVKPGDVAV	9	Unmodified	_RVKPGDVAV_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.7821044921875	2	470.782359	939.550165	0.11414	5.3736E-05	-0.80038	-0.0003768	-0.68624	-0.00032307	470.7819013966509	29.185	0.90775	29.263	29.016	29.924	0.078344					46	22	4	0	0	0	0.31037	1	1722	1722		74.255	5.4682	1	2407600			70933	6043	49693	49774	77409	77409					0.07797180025715988
RVKPLHYISW	10	Unmodified	_RVKPLHYISW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.5838623046875	3	433.583785	1297.72953	0.087904	3.8114E-05	-0.25863	-0.00011214	-0.17073	-7.4024E-05	433.58365511863684	46.981	1.7186	46.885	46.539	48.258	-0.096649					127	46	4	0	0	0	0.75651	3	4576	4565;4576;4588		63.534	12.743	1	9916400			70934	1640	49694	49775	77410;77411;77412	77411					0.09257064313646879
RVKPLHYISW	10	Unmodified	_RVKPLHYISW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.5839538574219	3	433.583785	1297.72953	0.28461	0.0001234	-0.57595	-0.00024972	-0.29135	-0.00012632	433.5835345124005	47.362	1.8916	47.093	46.73	48.621	-0.26939					139	51	4	0	0	0	0.72729	5	4600	4600;4612;4623;4636;4651		65.465	31.544	1	9802200			70935	1640	49694	49775	77413;77414;77415;77416;77417	77413					0.09257064313646879
RVKPLHYISW	10	Unmodified	_RVKPLHYISW_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.5843505859375	3	433.583785	1297.72953	0.19911	8.633E-05	-0.45485	-0.00019722	-0.25575	-0.00011089	433.5835426396167	47.117	2.0782	46.923	46.577	48.655	-0.19387					145	56	4	0	0	0	0.65479	5	4600	4566;4576;4588;4600;4615		70.816	30.287	1	9082200			70936	1640	49694	49775	77418;77419;77420;77421;77422	77421					0.09257064313646879
RVKRDSLD	8	Unmodified	_RVKRDSLD_					0	0	0			REV__ZC3H18|p.P213L|1|0.18|ENSG00000158545|chr16:88586634-88586634|C/T|missense_variant	REV__ZC3H18|p.P213L|1|0.18|ENSG00000158545|chr16:88586634-88586634|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7821960449219	2	494.780348	987.546142	-0.24596	-0.0001217	3.8942	0.0019268	3.6482	0.0018051	494.7821572230799	46.557	1.0464	46.46	46.115	47.161	-0.096649					58	28	3	0	0	0	0.81662	1	4484	4484		57.811	7.7867	1	4711200	+		70937	37792	49695	49776	77423	77423					0.051870905319901794
RVKRGVSE	8	Unmodified	_RVKRGVSE_					0	0	0			REV__ENSG00000124160|ENST00000290231|NCOA5	REV__ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.77703857421875	2	465.777608	929.540663	-0.12372	-5.7627E-05	0.4875	0.00022707	0.36378	0.00016944	465.7777970995094	94.162	1.1675	94.161	93.83	94.997	-0.00022888					62	27	3	0	0	0	1.043	1	11935	11935		30.504	0	1	1062700	+		70938	22739	49696	49777	77424	77424					0.07307411740191583
RVKRKLKLK	9	Unmodified	_RVKRKLKLK_					0	0	0		ENST00000502782.5_1_5:34845647-34845701:+|nuORF	ENST00000502782.5_1_5:34845647-34845701:+|nuORF	ENST00000502782.5_1_5:34845647-34845701:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.803466796875	2	584.921867	1167.82918	-0.7624	-0.00044594	-3.3482	-0.0019584	-4.1106	-0.0024044	584.9203844681294	53.55	0.11159	53.353	53.275	53.387	-0.19739					4	2	2	0	0	0	0.024541	1	5601	5601		19.36	12.167	1	62990			70939	15675	49697	49778	77425	77425					0.2519792671826053
RVKRTLSD	8	Unmodified	_RVKRTLSD_					0	0	0			REV__GCSAML|p.E107Ffs*4|1|0.07|ENSG00000169224|chr1:247574292-247574293|-/TTCATAAATT|frameshift_variant	REV__GCSAML|p.E107Ffs*4|1|0.07|ENSG00000169224|chr1:247574292-247574293|-/TTCATAAATT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7908935546875	2	487.790715	973.566878	0.29152	0.0001422	-0.5178	-0.00025258	-0.22629	-0.00011038	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	1.0574	1	10306	10306		24.203	2.5004	1	2091900	+		70940	26337	49698	49779	77426	77426					0.07903680911670108
RVKRTLSD	8	Unmodified	_RVKRTLSD_					0	0	0			REV__GCSAML|p.E107Ffs*4|1|0.07|ENSG00000169224|chr1:247574292-247574293|-/TTCATAAATT|frameshift_variant	REV__GCSAML|p.E107Ffs*4|1|0.07|ENSG00000169224|chr1:247574292-247574293|-/TTCATAAATT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79052734375	2	487.790715	973.566878	-0.9621	-0.0004693	0.73582	0.00035893	-0.22627	-0.00011037	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.96769	1	10296	10296		42.396	3.59	1	1891000	+		70941	26337	49698	49779	77427	77427					0.07903680911670108
RVKSFNPVKT	10	Unmodified	_RVKSFNPVKT_					0	0	0		ENST00000369605.8_2_6:86388325-86388400:-|nuORF	ENST00000369605.8_2_6:86388325-86388400:-|nuORF	ENST00000369605.8_2_6:86388325-86388400:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.318359375	2	588.348397	1174.68224	-1.2271	-0.00072194	1.1317	0.00066586	-0.095313	-5.6077E-05	588.3490917338058	53.884	0.48885	53.884	53.655	54.144	0					37	13	4	0	0	0	0.03519	1	5890	5890		46.457	0	1	1286600			70942	12931	49699	49780	77428	77428					0.10188785042646487
RVKSGLHS	8	Unmodified	_RVKSGLHS_					0	0	0		ENST00000471867.2_2_13:47349749-47349869:-|nuORF	ENST00000471867.2_2_13:47349749-47349869:-|nuORF	ENST00000471867.2_2_13:47349749-47349869:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7877502441406	2	442.259051	882.503549	-0.63321	-0.00028004	-0.65443	-0.00028943	-1.2876	-0.00056947	442.2584456181698	40.014	0.82343	40.037	39.873	40.696	0.023006					43	22	4	0	0	0	0.027866	1	3532	3532		37.159	18.835	1	1078300			70943	14975	49700	49781	77429	77429					0.05759740194423557
RVKSVNLDQW	10	Unmodified	_RVKSVNLDQW_					0	0	0		RLF-SMAP2|1|fusion;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2;nc|ENSG00000112305|Q8IYB5-3|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;ENSG00000112305|ENST00000370455|SMAP1	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.56329345703125	3	415.56305	1243.66732	-0.23885	-9.9257E-05	0.63793	0.0002651	0.39908	0.00016584	415.5631512450493	45.854	0.57028	45.593	45.284	45.854	-0.26118					45	15	4	0	0	0	0.811	1	4367	4367		59.931	15.554	1	2587000			70944	37837	49701	49782	77430	77430					0.05523293174655919
RVKSVNLDQW	10	Unmodified	_RVKSVNLDQW_					0	0	0		RLF-SMAP2|1|fusion;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2;nc|ENSG00000112305|Q8IYB5-3|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;ENSG00000112305|ENST00000370455|SMAP1	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	623.2918090820312	2	622.840936	1243.66732	-0.75009	-0.00046718	0.52171	0.00032494	-0.22838	-0.00014224	622.841275778087	45.8	0.53037	45.598	45.325	45.855	-0.20226					37	14	3	0	0	0	0.03519	1	4369	4369		80.455	19.483	1	1966600			70945	37837	49701	49782	77431	77431					0.05523293174655919
RVKSVNLDQW	10	Unmodified	_RVKSVNLDQW_					0	0	0		RLF-SMAP2|1|fusion;nc|ENSG00000084070|Q8WU79-2|SMAP2;ENSG00000084070|ENST00000372718|SMAP2;nc|ENSG00000112305|Q8IYB5-3|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;ENSG00000112305|ENST00000370455|SMAP1	RLF-SMAP2|1|fusion	RLF-SMAP2|1|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	415.56305	1243.66732	-0.24587	-0.00010217	0.99156	0.00041206	0.7457	0.00030988	415.5632827979919	45.643	0.58916	45.547	45.224	45.813	-0.096649	-0.031168	0.00018722	NaN	59.931	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2906600			70946	37837	49701	49782							0.05523293174655919
RVKTNVPVKLF	11	Unmodified	_RVKTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.77984619140625	3	434.27484	1299.80269	0.012774	5.5475E-06	-0.074921	-3.2536E-05	-0.062147	-2.6989E-05	434.2745488096538	46.654	0.41139	46.393	46.123	46.534	-0.26118					23	10	3	0	0	0	0.02473	1	4477	4477		26.75	4.1881	1	193220			70947	4169	49702	49783	77432	77432					0.16478193036255107
RVKTNVPVKLF	11	Unmodified	_RVKTNVPVKLF_					0	0	0		nc|ENSG00000125970|Q9UKM9-2|RALY;ENSG00000125970|ENST00000246194|RALY;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	nc|ENSG00000125970|Q9UKM9-2|RALY	nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	434.27484	1299.80269	0.17611	7.6482E-05	-0.45213	-0.00019635	-0.27601	-0.00011987	434.2746652699123	46.399	0.39938	46.303	46.039	46.438	-0.096653	-0.038864	-0.0003652	NaN	26.75	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226920			70948	4169	49702	49783							0.16478193036255107
RVKTVTFEY	9	Unmodified	_RVKTVTFEY_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-2|ALDH1L1;ENST00000467370.5_1_3:125822636-125822705:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.81396484375	2	571.813856	1141.61316	0.022258	1.2728E-05	-0.47843	-0.00027357	-0.45617	-0.00026085	571.8135556738716	42.598	0.97697	42.475	42.195	43.172	-0.12299					73	25	5	0	0	0	0.12602	3	3852	3840;3852;3865		104.75	54.722	1	5647000			70949	5782	49703	49784	77433;77434;77435	77434					0.048017010230978485
RVKTVTFEY	9	Unmodified	_RVKTVTFEY_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-2|ALDH1L1;ENST00000467370.5_1_3:125822636-125822705:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.81396484375	2	571.813856	1141.61316	-0.27635	-0.00015802	-0.16725	-9.5638E-05	-0.44361	-0.00025366	571.8137176659134	42.749	0.94567	42.516	42.234	43.179	-0.23239					73	24	5	0	0	0	0.15366	4	3851	3851;3864;3875;3889		98.629	47.437	1	5948000			70950	5782	49703	49784	77436;77437;77438;77439	77436					0.048017010230978485
RVKTVTFEY	9	Unmodified	_RVKTVTFEY_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-2|ALDH1L1;ENST00000467370.5_1_3:125822636-125822705:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.8142700195312	2	571.813856	1141.61316	-0.49333	-0.00028209	-0.062326	-3.5639E-05	-0.55566	-0.00031773	571.8137971468681	42.788	1.0156	42.562	42.26	43.275	-0.22597					64	26	4	0	0	0	0.2101	4	3863	3853;3863;3873;3886		87.696	30.975	1	5931700			70951	5782	49703	49784	77440;77441;77442;77443	77441					0.048017010230978485
RVKTVTFEY	9	Unmodified	_RVKTVTFEY_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-2|ALDH1L1;ENST00000467370.5_1_3:125822636-125822705:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.813856	1141.61316	-0.08362	-4.7815E-05	-2.823	-0.0016142	-2.9066	-0.0016621	572.8161108108724	42.506	0.31483	42.373	42.251	42.565	-0.1322	-0.10838	-0.0029486	NaN	104.75	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97795			70952	5782	49703	49784							0.048017010230978485
RVLAAVSH	8	Unmodified	_RVLAAVSH_					0	0	0		ENST00000457861.1_1_7:935511-935808:+|nuORF	ENST00000457861.1_1_7:935511-935808:+|nuORF	ENST00000457861.1_1_7:935511-935808:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7748107910156	2	426.756144	851.497735	0.21961	9.3718E-05	-0.10877	-4.6418E-05	0.11084	4.73E-05	426.7558818972725	42.942	0.45866	42.83	42.576	43.034	-0.11253					24	11	3	0	0	0	0.027866	1	3928	3928		33.516	0	1	246180			70953	14617	49704	49785	77444	77444					0.06604641682758938
RVLALLYGTT	10	Unmodified	_RVLALLYGTT_					0	0	0		ENST00000348370.8_1_15:59387117-59387267:+|nuORF	ENST00000348370.8_1_15:59387117-59387267:+|nuORF	ENST00000348370.8_1_15:59387117-59387267:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8307495117188	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0781	1	11018	11018		35.618	6.4482	1	6583300			70954	12580	49705	49786	77445	77445					0.10094577919812764
RVLALLYGTT	10	Unmodified	_RVLALLYGTT_					0	0	0		ENST00000348370.8_1_15:59387117-59387267:+|nuORF	ENST00000348370.8_1_15:59387117-59387267:+|nuORF	ENST00000348370.8_1_15:59387117-59387267:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8300170898438	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	1.0781	1	10602	10602		35.618	1.4457	1	1748900			70955	12580	49705	49786	77446	77446					0.10094577919812764
RVLALLYGTT	10	Unmodified	_RVLALLYGTT_					0	0	0		ENST00000348370.8_1_15:59387117-59387267:+|nuORF	ENST00000348370.8_1_15:59387117-59387267:+|nuORF	ENST00000348370.8_1_15:59387117-59387267:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8301391601562	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.1329	1	10891	10891		27.882	1.1893	1	5986700			70956	12580	49705	49786	77447	77447					0.10094577919812764
RVLCGEWIET	10	Unmodified	_RVLCGEWIET_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.8721008300781	3	402.537624	1204.59104	0.51166	0.00020596	-3.4135	-0.001374	-2.9018	-0.0011681	402.5362114269767	32.674	1.0761	32.437	31.954	33.03	-0.23666					44	25	3	0	0	0	0.03519	1	2327	2327		24.232	0	1	3852400			70957	7940;6337;18631;5026	49706	49787	77448	77448					-0.003068467169896394
RVLDAENID	9	Unmodified	_RVLDAENID_					0	0	0			REV__nc|ENSG00000159140|P18583-6|SON	REV__nc|ENSG00000159140|P18583-6|SON	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7803344726562	2	522.769645	1043.52474	0.28237	0.00014762	-2.4644	-0.0012883	-2.1821	-0.0011407	522.7683164793032	85.687	0.67035	85.687	85.414	86.085	0					23	15	2	0	0	0	0.023061	1	10767	10767		60.118	2.307	1	615200	+		70958	25235	49707	49788	77449	77449					0.004716607126283634
RVLDAENID	9	Unmodified	_RVLDAENID_					0	0	0			REV__nc|ENSG00000159140|P18583-6|SON	REV__nc|ENSG00000159140|P18583-6|SON	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7802124023438	2	522.769645	1043.52474	-0.86919	-0.00045439	-1.6136	-0.00084355	-2.4828	-0.0012979	522.7686903886431	85.612	1.075	85.636	84.869	85.944	0.023666					34	25	2	0	0	0	0.024025	1	10681	10681		62.107	3.3255	1	681380	+		70959	25235	49707	49788	77450	77450					0.004716607126283634
RVLDLAEQV	9	Unmodified	_RVLDLAEQV_					0	0	0		ENST00000465906.5_1_10:6157393-6157516:+|nuORF;ENST00000476706.5_1_10:6154982-6157516:+|nuORF;ENSG00000134453|ENST00000379888|RBM17	ENST00000465906.5_1_10:6157393-6157516:+|nuORF	ENST00000465906.5_1_10:6157393-6157516:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7976684570312	2	521.798206	1041.58186	-0.77688	-0.00040537	0.30295	0.00015808	-0.47392	-0.00024729	521.7982810670158	56.703	0.88322	56.539	56.239	57.122	-0.16431					40	24	3	0	0	0	0.20652	1	6304	6304		88.177	19.331	1	3750700			70960	4798	49708	49789	77451	77451					0.0627312798899311
RVLDLAEQV	9	Unmodified	_RVLDLAEQV_					0	0	0		ENST00000465906.5_1_10:6157393-6157516:+|nuORF;ENST00000476706.5_1_10:6154982-6157516:+|nuORF;ENSG00000134453|ENST00000379888|RBM17	ENST00000465906.5_1_10:6157393-6157516:+|nuORF	ENST00000465906.5_1_10:6157393-6157516:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.79736328125	2	521.798206	1041.58186	-0.60238	-0.00031432	0.28777	0.00015016	-0.31461	-0.00016416	521.7982725339358	56.436	0.8447	56.534	56.209	57.053	0.097893					42	23	3	0	0	0	0.28047	1	6205	6205		78.264	6.3863	1	3434600			70961	4798	49708	49789	77452	77452					0.0627312798899311
RVLELLKQY	9	Unmodified	_RVLELLKQY_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.3529052734375	2	581.353148	1160.69174	-0.18168	-0.00010562	0.42343	0.00024616	0.24175	0.00014054	581.3532460059627	53.323	0.69404	53.196	52.913	53.607	-0.12705					52	18	4	0	0	0	0.48817	1	5587	5587		60.118	12.461	1	2541800			70962	1175;38049	49709	49790	77453	77453					0.11782553328202994
RVLELLKQY	9	Unmodified	_RVLELLKQY_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.3536376953125	2	581.353148	1160.69174	-0.76593	-0.00044527	1.0403	0.00060479	0.27438	0.00015951	581.35365854449	53.539	0.67345	53.281	53	53.674	-0.25838					52	18	4	0	0	0	0.30449	1	5610	5610		75.043	23.851	1	2824700			70963	1175;38049	49709	49790	77454	77454					0.11782553328202994
RVLELLKQY	9	Unmodified	_RVLELLKQY_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;ENST00000557005.1_1_14:64469755-64489638:+|nuORF;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.3536376953125	2	581.353148	1160.69174	-0.63203	-0.00036743	0.73563	0.00042766	0.1036	6.0228E-05	581.3534941941584	53.385	0.78247	53.195	52.904	53.686	-0.19091					57	21	4	0	0	0	0.32064	1	5592	5592		72.879	21.687	1	2330000			70964	1175;38049	49709	49790	77455	77455					0.11782553328202994
RVLELQQQL	9	Unmodified	_RVLELQQQL_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;nc|ENSG00000170037|Q8N137-4|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8324584960938	2	563.83258	1125.65061	-0.61485	-0.00034667	0.26661	0.00015033	-0.34823	-0.00019634	563.832640454522	54.178	1.1427	54.178	53.726	54.869	0					81	32	5	0	0	0	0.013337	2	5909	5909;5920		176.44	23.811	1	3414000			70965	8006;17040	49710	49791	77456;77457	77456					0.09280792288723205
RVLELQQQL	9	Unmodified	_RVLELQQQL_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;nc|ENSG00000170037|Q8N137-4|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.832763671875	2	563.83258	1125.65061	-0.21245	-0.00011979	-0.20385	-0.00011494	-0.4163	-0.00023473	563.8323719228875	54.324	1.077	54.176	53.602	54.679	-0.14723					82	30	5	0	0	0	0.016169	2	5913	5897;5913		219.56	71.521	1	3254600			70966	8006;17040	49710	49791	77458;77459	77459					0.09280792288723205
RVLELQQQL	9	Unmodified	_RVLELQQQL_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;nc|ENSG00000170037|Q8N137-4|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.8324584960938	2	563.83258	1125.65061	-0.19418	-0.00010948	-0.17535	-9.887E-05	-0.36953	-0.00020835	563.8323843553394	53.979	0.92484	54.077	53.667	54.591	0.098015					65	26	4	0	0	0	0.013924	2	5815	5802;5815		209.19	56.562	1	3287400			70967	8006;17040	49710	49791	77460;77461	77461					0.09280792288723205
RVLERQSSK	9	Unmodified	_RVLERQSSK_					0	0	0			REV__ENST00000420329.6_1_15:91186107-91186239:+|nuORF	REV__ENST00000420329.6_1_15:91186107-91186239:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.3077392578125	2	551.820004	1101.62546	-0.96694	-0.00053358	3.5137	0.0019389	2.5467	0.0014053	551.8220456007156	44.592	0.83276	44.592	44.281	45.114	0					73	23	4	0	0	0	0.024456	1	4235	4235		42.864	19.822	1	3937900	+		70968	32162	49711	49792	77462	77462					0.07870737486155122
RVLERQSSK	9	Unmodified	_RVLERQSSK_					0	0	0			REV__ENST00000420329.6_1_15:91186107-91186239:+|nuORF	REV__ENST00000420329.6_1_15:91186107-91186239:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.3070678710938	2	551.820004	1101.62546	-0.51485	-0.0002841	3.027	0.0016704	2.5122	0.0013863	551.8217904686117	44.64	0.83151	44.677	44.375	45.207	0.0369					76	23	4	0	0	0	0.024484	1	4190	4190		23.523	12.012	1	3978100	+		70969	32162	49711	49792	77463	77463					0.07870737486155122
RVLERQSSK	9	Unmodified	_RVLERQSSK_					0	0	0			REV__ENST00000420329.6_1_15:91186107-91186239:+|nuORF	REV__ENST00000420329.6_1_15:91186107-91186239:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.820004	1101.62546	-1.4548	-0.00080281	4.1456	0.0022876	2.6908	0.0014848	551.8224087060155	44.745	0.79104	44.596	44.288	45.079	-0.1488	-0.025293	0.00059374	NaN	35.152	74	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3745700	+		70970	32162	49711	49792							0.07870737486155122
RVLFKTVH	8	Unmodified	_RVLFKTVH_					0	0	0			REV__ENST00000487863.5_1_19:53057832-53058279:+|nuORF	REV__ENST00000487863.5_1_19:53057832-53058279:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3057556152344	2	500.308544	998.602535	-0.72522	-0.00036284	-4.1484	-0.0020755	-4.8736	-0.0024383	500.3064276370605	32.939	0.83373	32.946	32.738	33.572	0.0066261					42	22	3	0	0	0	1.0106	1	2331	2331		35.618	1.4457	1	3294800	+		70971	33625	49712	49793	77464	77464					0.10317763159309834
RVLFPLGLG	9	Unmodified	_RVLFPLGLG_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000556588.5_1_14:74427827-74429699:+|nuORF	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2905578613281	2	486.30547	970.596387	-1.2846	-0.00062471	2.3497	0.0011427	1.0651	0.00051794	486.30634567582797	27.331	0.51439	27.412	27.245	27.759	0.081293					28	13	3	0	0	0	0.024293	1	1418	1418		25.45	10.786	1	242760			70972	3762	49713	49794	77465	77465					0.10991244927788557
RVLGKSPGKT	10	Unmodified	_RVLGKSPGKT_					0	0	0		ENST00000586664.1_1_19:32873361-32873986:+|nuORF;ENSG00000168813|ENST00000355898|ZNF507	ENST00000586664.1_1_19:32873361-32873986:+|nuORF	ENST00000586664.1_1_19:32873361-32873986:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.266357421875	2	521.822015	1041.62948	-0.031788	-1.6588E-05	0.37569	0.00019604	0.3439	0.00017946	521.8220990104709	50.675	0.33431	50.564	50.341	50.675	-0.11163					12	8	2	0	0	0	0.03519	1	5148	5148		25.574	3.6142	1	157610			70973	7868	49714	49795	77466	77466					0.11032826979840138
RVLGVSDVITW	11	Unmodified	_RVLGVSDVITW_					0	0	0		nc|ENSG00000163840|Q8TDB6-2|DTX3L;ENSG00000163840|ENST00000296161|DTX3L	nc|ENSG00000163840|Q8TDB6-2|DTX3L	nc|ENSG00000163840|Q8TDB6-2|DTX3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.8533935546875	2	622.853512	1243.69247	-0.047403	-2.9525E-05	0.14623	9.1081E-05	0.098829	6.1556E-05	622.8534773195084	75.754	1.1885	75.481	75.103	76.291	-0.27266					61	29	4	0	0	0	0.023413	2	8963	8951;8963		129.42	46.671	1	3156900			70974	7157	49715	49796	77467;77468	77468					0.0803734797721063
RVLGVSDVITW	11	Unmodified	_RVLGVSDVITW_					0	0	0		nc|ENSG00000163840|Q8TDB6-2|DTX3L;ENSG00000163840|ENST00000296161|DTX3L	nc|ENSG00000163840|Q8TDB6-2|DTX3L	nc|ENSG00000163840|Q8TDB6-2|DTX3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.853515625	2	622.853512	1243.69247	-1.2185	-0.00075896	1.466	0.00091313	0.24751	0.00015416	622.8542908347185	75.755	1.1045	75.496	75.075	76.179	-0.25866					55	27	4	0	0	0	0.014124	2	8967	8967;8977		134.77	71.232	1	3434300			70975	7157	49715	49796	77469;77470	77469					0.0803734797721063
RVLGVSDVITW	11	Unmodified	_RVLGVSDVITW_					0	0	0		nc|ENSG00000163840|Q8TDB6-2|DTX3L;ENSG00000163840|ENST00000296161|DTX3L	nc|ENSG00000163840|Q8TDB6-2|DTX3L	nc|ENSG00000163840|Q8TDB6-2|DTX3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.853759765625	2	622.853512	1243.69247	0.18415	0.0001147	-0.19831	-0.00012352	-0.01416	-8.8193E-06	622.8533277440008	75.624	1.1446	75.449	75.029	76.174	-0.17548					52	28	3	0	0	0	0.011513	2	8934	8934;8946		138.06	61.288	1	3397200			70976	7157	49715	49796	77471;77472	77471					0.0803734797721063
RVLHHLWWRFW	11	Unmodified	_RVLHHLWWRFW_					0	0	0			REV__nc|ENSG00000183283|Q15038-5|DAZAP2	REV__nc|ENSG00000183283|Q15038-5|DAZAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2825317382812	3	545.965112	1634.87351	0.24738	0.00013506	-4.2574	-0.0023244	-4.0101	-0.0021893	546.2965406853184	50.875	0.18443	50.764	50.675	50.859	-0.11163					7	4	2	0	0	0	0.024896	1	5194	5194		3.4087	0.38274	1	211290	+		70977	37003	49716	49797	77473	77473					0.08146330864428819
RVLHVGGT	8	Unmodified	_RVLHVGGT_					0	0	0		ENSG00000138050|ENST00000505747|THUMPD2;ENST00000460072.5_1_2:39963877-39988481:-|nuORF	ENSG00000138050|ENST00000505747|THUMPD2	ENSG00000138050|ENST00000505747|THUMPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.521728515625	2	419.748319	837.482085	-0.4901	-0.00020572	0.42072	0.00017659	-0.069381	-2.9122E-05	419.7483486713832	25.136	0.51934	24.909	24.752	25.271	-0.22683					18	11	2	0	0	0	0.027866	1	1152	1152		4.3163	0	1	80482			70978	5196	49717	49798	77474	77474					0.0568435516571526
RVLHVGGT	8	Unmodified	_RVLHVGGT_					0	0	0		ENSG00000138050|ENST00000505747|THUMPD2;ENST00000460072.5_1_2:39963877-39988481:-|nuORF	ENSG00000138050|ENST00000505747|THUMPD2	ENSG00000138050|ENST00000505747|THUMPD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	419.748319	837.482085	-0.40995	-0.00017208	1.1718	0.00049188	0.76188	0.0003198	419.74869133742686	24.808	0.62034	24.808	24.474	25.094	0	-0.033585	0.00026429	NaN	4.3163	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89085			70979	5196	49717	49798							0.0568435516571526
RVLHVGGT	8	Unmodified	_RVLHVGGT_					0	0	0		ENSG00000138050|ENST00000505747|THUMPD2;ENST00000460072.5_1_2:39963877-39988481:-|nuORF	ENSG00000138050|ENST00000505747|THUMPD2	ENSG00000138050|ENST00000505747|THUMPD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	419.748319	837.482085	-1.041	-0.00043695	1.7644	0.00074061	0.72344	0.00030366	419.74891941952006	24.907	0.52975	24.872	24.591	25.121	-0.034395	0.030614	0.00076176	NaN	4.3163	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74460			70980	5196	49717	49798							0.0568435516571526
RVLHVGGT	8	Unmodified	_RVLHVGGT_					0	0	0		ENSG00000138050|ENST00000505747|THUMPD2;ENST00000460072.5_1_2:39963877-39988481:-|nuORF	ENSG00000138050|ENST00000505747|THUMPD2	ENSG00000138050|ENST00000505747|THUMPD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	419.748319	837.482085	0.41542	0.00017437	0.85277	0.00035795	1.2682	0.00053232	419.74825255950344	24.813	0.53882	24.892	24.594	25.132	0.078344	0.050177	-3.5634E-06	NaN	4.3163	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75911			70981	5196	49717	49798							0.0568435516571526
RVLKEVQSL	9	Unmodified	_RVLKEVQSL_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.3292236328125	2	536.329673	1070.64479	-0.54276	-0.0002911	-0.00071067	-3.8115E-07	-0.54347	-0.00029148	536.3295589966995	40.455	1.1955	40.23	40.004	41.2	-0.225					54	31	3	0	0	0	0.31247	1	3492	3492		73.975	2.0973	1	2931000	+		70982	33266	49718	49799	77475	77475					0.11229693777045213
RVLKEVQSL	9	Unmodified	_RVLKEVQSL_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3295288085938	2	536.329673	1070.64479	-1.793	-0.00096164	1.2963	0.00069525	-0.4967	-0.00026639	536.3302950318375	40.52	1.4266	40.29	40.008	41.434	-0.23021					73	37	4	0	0	0	0.25032	1	3484	3484		82.305	5.5309	1	2666400	+		70983	33266	49718	49799	77476	77476					0.11229693777045213
RVLKEVQSL	9	Unmodified	_RVLKEVQSL_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	536.329673	1070.64479	-0.54276	-0.0002911	-0.00071067	-3.8115E-07	-0.54347	-0.00029148	536.3295589966995	40.455	1.1955	40.23	40.004	41.2	-0.225	0.0030261	-0.00080856	NaN	82.305	54	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2931000	+		70984	33266	49718	49799							0.11229693777045213
RVLKEVQSL	9	Unmodified	_RVLKEVQSL_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	536.329673	1070.64479	-1.793	-0.00096164	1.2963	0.00069525	-0.4967	-0.00026639	536.3302950318375	40.52	1.4266	40.29	40.008	41.434	-0.23021	0.062357	0.0005827	NaN	82.305	73	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2666400	+		70985	33266	49718	49799							0.11229693777045213
RVLKSKTYLD	10	Unmodified	_RVLKSKTYLD_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;nc|ENSG00000077514|Q15054-3|POLD3;nc|ENSG00000077514|Q15054-2|POLD3;ENST00000530163.1_1_11:74340223-74351808:+|nuORF	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.26348876953125	3	408.243317	1221.70812	0.54485	0.00022243	0.049361	2.0151E-05	0.59421	0.00024258	408.24334178929877	21.465	0.39066	21.274	21.029	21.42	-0.19072					10	7	2	0	0	0	0.03519	1	670	670		15.333	0	1	23973			70986	1615	49719	49800	77477	77477					0.10613634494256985
RVLKSRLAP	9	Unmodified	_RVLKSRLAP_					0	0	0			REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	REV__nc|ENSG00000126453|Q9HB09-3|BCL2L12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.3400268554688	2	520.340375	1038.6662	-0.5796	-0.00030159	0.04462	2.3218E-05	-0.53498	-0.00027837	520.3402579855747	23.094	0.84715	23.033	22.753	23.6	-0.060862					52	19	4	0	0	0	0.97455	1	887	887		25.574	3.6142	1	891850	+		70987	22894	49720	49801	77478	77478					0.14841123596397665
RVLKTKKR	8	Unmodified	_RVLKTKKR_					0	0	0		ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10;nc|ENSG00000242265|Q86TG7-5|PEG10	ENSG00000242265|ENST00000612748|PEG10	ENSG00000242265|ENST00000612748|PEG10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.822021484375	2	514.856193	1027.69783	-0.48319	-0.00024877	2.6914	0.0013857	2.2082	0.0011369	514.8574055849494	56.788	0.55444	56.623	56.387	56.941	-0.16431					26	15	2	0	0	0	0.027866	1	6323	6323		23.042	3.6825	1	263790			70988	10796	49721	49802	77479	77479					0.18509116350355725
RVLKTLSTL	9	Unmodified	_RVLKTLSTL_					0	0	0		ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2703857421875	2	515.834591	1029.65463	-1.4086	-0.00072663	1.4617	0.00075402	0.053103	2.7392E-05	515.835383139034	50.982	0.65553	51.069	50.855	51.511	0.087006					32	17	3	0	0	0	0.02435	1	5302	5302		42.396	0	1	510040			70989	2501	49722	49803	77480	77480					0.14098881782433637
RVLKVLSV	8	Unmodified	_RVLKVLSV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.31341552734375	2	457.313295	912.612037	-0.59237	-0.0002709	-0.099151	-4.5343E-05	-0.69152	-0.00031624	457.3131968046075	44.332	2.3209	44.332	44.022	46.343	0					141	67	5	0	0	0	0.93274	1	4208	4208		47.916	0	1	17509000			70990	7775;8411	49723	49804	77481	77481					0.1522353144484896
RVLNGPCIL	9	Unmodified	_RVLNGPCIL_					0	0	0			REV__nc|ENSG00000170703|Q8N841-4|TTLL6	REV__nc|ENSG00000170703|Q8N841-4|TTLL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.78863525390625	2	492.786587	983.558621	0.71678	0.00035322	3.0243	0.0014903	3.7411	0.0018435	492.78797359409566	20.666	0.58994	20.734	20.514	21.103	0.068901					33	11	4	0	0	0	0.55828	1	526	526		55.504	7.5886	1	628100	+		70991	36924	49724	49805	77482	77482					0.06618410670671437
RVLPPSALQSV	11	Unmodified	_RVLPPSALQSV_					0	0	0		nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.2859497070312	2	583.84823	1165.68191	-1.1462	-0.00066923	1.159	0.00067665	0.012722	7.4277E-06	583.8488705642128	55.607	1.8425	55.391	54.749	56.591	-0.21551					115	49	3	0	0	0	0.024765	1	5964	5964		49.536	12.377	1	403190			70992	8858	49725	49806	77483	77483					0.10569365322771773
RVLPPSALQSV	11	Unmodified	_RVLPPSALQSV_					0	0	0		nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	583.84823	1165.68191	-0.74309	-0.00043385	0.56817	0.00033172	-0.17492	-0.00010213	583.8484519226873	55.544	2.4214	55.544	54.689	57.111	0	0.1797	-0.00010926	NaN	45.022	152	68	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106800			70993	8858	49725	49806							0.10569365322771773
RVLPPSALQSV	11	Unmodified	_RVLPPSALQSV_					0	0	0		nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	583.84823	1165.68191	-1.1183	-0.00065291	0.95327	0.00055657	-0.16502	-9.6346E-05	583.8486658964378	55.48	2.2431	55.324	54.74	56.983	-0.15601	-0.04108	0.00034042	NaN	45.022	136	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934500			70994	8858	49725	49806							0.10569365322771773
RVLPPSALQSV	11	Unmodified	_RVLPPSALQSV_					0	0	0		nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	nc|ENSG00000178999|Q96GD4-4|AURKB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	583.84823	1165.68191	-0.40989	-0.00023932	0.33959	0.00019827	-0.070308	-4.1049E-05	583.8483081748246	55.262	2.5854	55.36	54.66	57.246	0.098015	-0.0045927	-0.00037617	NaN	45.022	150	71	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825770			70995	8858	49725	49806							0.10569365322771773
RVLPVVLS	8	Unmodified	_RVLPVVLS_					0	0	0		ENST00000359520.11_1_14:102843003-102843273:+|nuORF	ENST00000359520.11_1_14:102843003-102843273:+|nuORF	ENST00000359520.11_1_14:102843003-102843273:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2665710449219	2	441.792195	881.569838	-0.18002	-7.9532E-05	0.40373	0.00017837	0.22371	9.8833E-05	441.7922078231954	61.076	0.49127	60.863	60.604	61.096	-0.21339					25	12	3	0	0	0	0.027866	1	6988	6988		31.955	18.996	1	411250			70996	12741	49726	49807	77484	77484					0.12431556036472102
RVLQHKRR	8	Unmodified	_RVLQHKRR_					0	0	0		ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000498815.1_1_9:19376293-19376674:-|nuORF	ENST00000498815.1_1_9:19376293-19376674:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.8117065429688	2	546.84669	1091.67883	-0.42349	-0.00023159	1.0836	0.00059254	0.66006	0.00036095	546.8473660390803	46.561	0.17683	46.561	46.447	46.623	0					7	4	2	0	0	0	0.027866	1	4598	4598		35.201	6.9464	1	128420			70997	5093	49727	49808	77485	77485					0.13665579779308246
RVLQWESLV	9	Unmodified	_RVLQWESLV_					0	0	0			REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	565.314453125	2	565.321848	1128.62914	-0.38904	-0.00021993	-0.3494	-0.00019752	-0.73843	-0.00041745	565.3214004099927	36.722	0.39575	36.659	36.508	36.904	-0.063385					24	9	4	0	0	0	0.024457	1	2906	2906		21.96	0	1	669160	+		70998	34103	49728	49809	77486	77486					0.06997407259973443
RVLRDALD	8	Unmodified	_RVLRDALD_					0	0	0			REV__nc|ENSG00000033170|Q9BYC5-3|FUT8	REV__nc|ENSG00000033170|Q9BYC5-3|FUT8	MSMS	OPSCC_40_ClassI_Rep-2	5	479.27728271484375	2	479.277441	956.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.24	1	86.097	85.597	86.597	-0.14217								0	0	0	0.85517	1	10474	10474		30.504	1.3336	1		+		70999	20053	49729	49810	77487	77487					0.06031992020314192
RVLRMRSRQSQ	11	Unmodified	_RVLRMRSRQSQ_					0	0	0			REV__ENST00000357203.7_1_3:50604919-50605126:-|nuORF	REV__ENST00000357203.7_1_3:50604919-50605126:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.28765869140625	3	472.937004	1415.78918	0.67262	0.00031811	-1.3538	-0.00064024	-0.68114	-0.00032213	473.2695787895676	94.224	0.15578	94.224	94.088	94.244	0					5	3	2	0	0	0	0.024828	1	11978	11978		13.508	0	1	49521	+		71000	30823	49730	49811	77488	77488					0.09792011985382487
RVLRYLVE	8	Unmodified	_RVLRYLVE_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.781982421875	2	524.319109	1046.62366	-0.65585	-0.00034387	0.59624	0.00031262	-0.05961	-3.1255E-05	524.3192869765787	27.807	0.60788	27.803	27.509	28.117	-0.0042019					23	15	2	0	0	0	0.027866	1	1595	1595		35.201	6.9464	1	89231			71001	1868	49731	49812	77489	77489					0.10221728468172842
RVLSSGRSL	9	Unmodified	_RVLSSGRSL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7906188964844	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.97455	1	10334	10334		25.574	1.07	1	2003200			71002	5175	49732	49813	77490	77490					0.07903680911670108
RVLTENFTL	9	Unmodified	_RVLTENFTL_					0	0	0		ENSG00000226490|ENST00000643770|C8orf90	ENSG00000226490|ENST00000643770|C8orf90	ENSG00000226490|ENST00000643770|C8orf90	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.3268432617188	2	546.806031	1091.59751	0.10877	5.9477E-05	3.9897	0.0021816	4.0985	0.0022411	546.808036266013	79.945	0.66817	79.726	79.41	80.079	-0.21923					45	15	4	0	0	0	0.024367	1	9574	9574		52.937	0	1	1037900			71003	10664	49733	49814	77491	77491					0.05537414506034111
RVLTGRLL	8	Unmodified	_RVLTGRLL_					0	0	0			REV__ENSG00000197296|ENST00000396825|FITM2	REV__ENSG00000197296|ENST00000396825|FITM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2642517089844	2	464.308544	926.602535	0.18588	8.6307E-05	-2.4498	-0.0011375	-2.2639	-0.0010511	464.3074939983877	58.323	0.1144	58.323	58.266	58.38	0					4	2	2	0	0	0	0.027866	1	6601	6601		26.796	6.3143	1	67539	+		71004	28287	49734	49815	77492	77492					0.13629763159326558
RVLTLAFFIAS	11	Unmodified	_RVLTLAFFIAS_					0	0	0		XKR3|p.V251L|1|0.08|ENSG00000172967|chr22:16784248-16784248|C/A|missense_variant	XKR3|p.V251L|1|0.08|ENSG00000172967|chr22:16784248-16784248|C/A|missense_variant	XKR3|p.V251L|1|0.08|ENSG00000172967|chr22:16784248-16784248|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.3715209960938	2	619.368798	1236.72304	-0.1507	-9.3342E-05	3.5298	0.0021862	3.3791	0.0020929	619.370979083808	100.11	0.78519	100.11	99.704	100.49	0					55	19	4	0	0	0	1.0592	1	12837	12837		22.58	0	1	1092500			71005	38161	49735	49816	77493	77493					0.11415126362271621
RVLTRNGSP	9	Unmodified	_RVLTRNGSP_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	REV__nc|ENSG00000131620|Q5XXA6-3|ANO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.28778076171875	2	500.28834	998.562127	-0.91018	-0.00045535	-1.2919	-0.00064634	-2.2021	-0.0011017	500.28843612336397	23.917	1.2062	23.87	23.281	24.487	-0.047148					66	27	5	0	0	0	0.6238	1	968	968		51.193	10.62	1	2416300	+		71006	23222	49736	49817	77494	77494					0.06278796768901884
RVMAPRALL	9	Oxidation (M)	_RVM(Oxidation (M))APRALL_		RVM(1)APRALL		RVM(41)APRALL	0	0	1		ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.81298828125	2	521.813136	1041.61172	-0.37996	-0.00019827	-0.35072	-0.00018301	-0.73068	-0.00038128	521.8129367151431	41.316	0.74377	41.316	40.944	41.688	0					65	18	4	0	0	0	0.78069	1	3722	3722		40.573	8.6178	1	14596000			71007	10352	49737	49818	77495	77495		438			0.0925778845332843
RVMAPRALL	9	Oxidation (M)	_RVM(Oxidation (M))APRALL_		RVM(1)APRALL		RVM(46)APRALL	0	0	1		ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8130493164062	2	521.813136	1041.61172	-0.33508	-0.00017485	-0.083456	-4.3548E-05	-0.41853	-0.0002184	521.8130217566711	41.917	1.8968	41.917	41.579	43.475	0					149	53	4	0	0	0	0.70186	1	3819	3819		45.952	6.9305	1	7471500			71008	10352	49737	49818	77496	77496		438			0.0925778845332843
RVMAPRALL	9	Oxidation (M)	_RVM(Oxidation (M))APRALL_		RVM(1)APRALL		RVM(41)APRALL	0	0	1		ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.81298828125	2	521.813136	1041.61172	-0.21676	-0.00011311	-0.24522	-0.00012796	-0.46198	-0.00024107	521.8130103174198	42.098	1.6966	42.124	41.821	43.517	0.026016					122	47	3	0	0	0	0.78069	1	3764	3764		40.573	7.7602	1	8235700			71009	10352	49737	49818	77497	77497		438			0.0925778845332843
RVMAPRALL	9	Unmodified	_RVMAPRALL_					0	0	0		ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8152465820312	2	513.815679	1025.6168	-0.88782	-0.00045617	0.21142	0.00010863	-0.6764	-0.00034754	513.8158316785673	44.808	1.3324	44.808	44.485	45.818	0					110	38	5	0	0	0	0.59099	3	4303	4282;4303;4342		53.351	16.192	1	21263000			71010	10352	49737	49819	77498;77499;77500	77499					0.10502092315959999
RVMAPRALL	9	Unmodified	_RVMAPRALL_					0	0	0		ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	ENST00000484378.1_1_6:31239370-31239848:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.815673828125	2	513.815679	1025.6168	-0.9202	-0.00047282	0.25265	0.00012982	-0.66755	-0.000343	513.8158727691498	44.962	1.1631	44.814	44.523	45.686	-0.1488					95	33	4	0	0	0	0.43973	3	4333	4298;4309;4333		63.306	9.9548	1	23522000			71011	10352	49737	49819	77501;77502;77503	77503					0.10502092315959999
RVMELFFTV	9	Unmodified	_RVMELFFTV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant;XPO4|p.E325Lfs*5|1|0.12|ENSG00000132953|chr13:20822157-20822158|-/AA|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.307861328125	2	571.307352	1140.60015	0.27262	0.00015575	-0.29368	-0.00016778	-0.021059	-1.2031E-05	571.3070988229277	81.107	0.89742	80.869	80.531	81.428	-0.23784					36	21	3	0	0	0	0.45795	1	9743	9743		62.107	8.756	1	833140			71012	4666	49738	49820	77504	77504					0.03547546639333632
RVMELFFTV	9	Unmodified	_RVMELFFTV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant;XPO4|p.E325Lfs*5|1|0.12|ENSG00000132953|chr13:20822157-20822158|-/AA|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	571.307352	1140.60015	-1.2158	-0.00069458	2.0873	0.0011925	0.87156	0.00049793	571.3082814577474	81.141	0.39761	81.141	80.861	81.258	0	0.11629	0.0024333	NaN	62.107	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149040			71013	4666	49738	49820							0.03547546639333632
RVMELFFTV	9	Unmodified	_RVMELFFTV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant;XPO4|p.E325Lfs*5|1|0.12|ENSG00000132953|chr13:20822157-20822158|-/AA|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.307352	1140.60015	-0.86532	-0.00049436	1.7248	0.00098537	0.85943	0.000491	571.3085577949631	81.356	0.40123	81.225	80.897	81.298	-0.13075	0.20015	0.002019	NaN	62.107	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151950			71014	4666	49738	49820							0.03547546639333632
RVMELFFTV	9	Unmodified	_RVMELFFTV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant;XPO4|p.E325Lfs*5|1|0.12|ENSG00000132953|chr13:20822157-20822158|-/AA|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	571.307352	1140.60015	-1.4257	-0.00081449	2.4902	0.0014227	1.0645	0.00060817	571.3089075821327	81.162	0.43651	81.186	80.852	81.288	0.023911	0.16115	0.0028936	NaN	62.107	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170120			71015	4666	49738	49820							0.03547546639333632
RVMELFFTV	9	Unmodified	_RVMELFFTV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant;XPO4|p.E325Lfs*5|1|0.12|ENSG00000132953|chr13:20822157-20822158|-/AA|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	571.307352	1140.60015	0.38925	0.00022238	-0.50361	-0.00028772	-0.11436	-6.5336E-05	571.306958108018	81.068	0.90051	80.862	80.548	81.448	-0.20633	-0.16338	-0.00052712	NaN	62.107	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	661490			71016	4666	49738	49820							0.03547546639333632
RVMELFFTV	9	Unmodified	_RVMELFFTV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant;XPO4|p.E325Lfs*5|1|0.12|ENSG00000132953|chr13:20822157-20822158|-/AA|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	571.307352	1140.60015	-0.21968	-0.0001255	0.10921	6.2394E-05	-0.11047	-6.3111E-05	571.3073399652358	81.01	0.94454	80.867	80.371	81.316	-0.14248	-0.15815	0.0001731	NaN	62.107	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503560			71017	4666	49738	49820							0.03547546639333632
RVMGSQVERS	10	Unmodified	_RVMGSQVERS_					0	0	0			REV__ENST00000355653.7_1_17:41166726-41167353:-|nuORF	REV__ENST00000355653.7_1_17:41166726-41167353:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.79296875	2	574.795672	1147.57679	-0.24018	-0.00013805	-4.4537	-0.00256	-4.6939	-0.002698	574.7931073435153	31.67	1.0356	31.682	31.34	32.376	0.011797					82	25	5	0	0	0	0.83673	1	2103	2103		58.23	6.8945	1	9817200	+		71018	30779	49739	49821	77505	77505					0.00890500854734455
RVMLKYLF	8	Unmodified	_RVMLKYLF_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8056640625	2	535.31498	1068.61541	-0.94653	-0.00050669	-1.4988	-0.00080234	-2.4453	-0.001309	535.815870632259	80.841	0.51683	80.841	80.5	81.017	0					16	12	2	0	0	0	0.027866	1	10008	10008		14.664	0	1	248660			71019	6231	49740	49822	77506	77506					0.08384458227192226
RVMLYPSRI	9	Oxidation (M)	_RVM(Oxidation (M))LYPSRI_		RVM(1)LYPSRI		RVM(60)LYPSRI	0	0	1		ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8231201171875	2	575.823701	1149.63285	-1.1962	-0.00068883	0.71493	0.00041167	-0.48132	-0.00027715	575.8240145752235	44.388	0.67838	44.243	43.883	44.561	-0.14471					68	19	4	0	0	0	0.48817	1	4209	4209		60.118	12.203	1	5484300			71020	9175	49741	49823	77507	77507		385			0.06401753762202134
RVMLYPSRI	9	Oxidation (M)	_RVM(Oxidation (M))LYPSRI_		RVM(1)LYPSRI		RVM(51)LYPSRI	0	0	1		ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8239135742188	2	575.823701	1149.63285	-0.77305	-0.00044514	0.32655	0.00018803	-0.4465	-0.0002571	575.8237889684899	44.236	0.75821	44.273	43.923	44.681	0.0369					69	21	4	0	0	0	0.6238	1	4146	4146		51.193	8.7966	1	5533500			71021	9175	49741	49823	77508	77508		385			0.06401753762202134
RVMPEEIGLFA	11	Unmodified	_RVMPEEIGLFA_					0	0	0			REV__ENST00000424862.2_1_1:8967496-8967595:-|nuORF	REV__ENST00000424862.2_1_1:8967496-8967595:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.5633850097656	3	421.225158	1260.65364	3.4869	0.0014688	-0.06838	-2.8803E-05	3.4186	0.00144	421.22518532601345	17.397	0.19865	17.397	17.25	17.449	0					8	3	3	0	0	0	1.0764	1	165	165		17.833	0.6664	1	22700	+		71022	32241	49742	49824	77509	77509					0.0337429935120781
RVMSGKLTV	9	Unmodified	_RVMSGKLTV_					0	0	0		ENSG00000138160|ENST00000260731|KIF11;chr10:92637309-92637391|490|10.29|0.46|4.47|+|ENST00000677720|KIF11,KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.79132080078125	2	495.791869	989.569186	-0.49661	-0.00024622	0.14888	7.3811E-05	-0.34774	-0.00017241	495.7918321886072	34.661	1.0673	34.657	34.336	35.404	-0.0045624					54	27	3	0	0	0	0.31037	1	2589	2589		74.255	5.4682	1	2250600			71023	5213	49743	49825	77510	77510					0.07398393325127017
RVMWRWFVL	9	Unmodified	_RVMWRWFVL_					0	0	0			REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	431.551025390625	3	431.574344	1291.7012	-0.50186	-0.00021659	-2.3122	-0.00099789	-2.8141	-0.0012145	431.90777531763763	36.457	0.14015	36.457	36.334	36.474	0					5	3	2	0	0	0	0.024209	1	2882	2882		66.429	2.7352	1	38232	+		71024	34844	49744	49826	77511	77511					0.06702043132713698
RVNALASVP	9	Unmodified	_RVNALASVP_					0	0	0		ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7775573730469	2	463.774534	925.534515	-0.11325	-5.2525E-05	1.2681	0.00058813	1.1549	0.00053561	463.7742357687104	49.388	1.058	49.236	48.864	49.922	-0.15277					84	28	5	0	0	0	0.85329	1	5097	5097		35.618	1.4457	1	8462700			71025	17559	49745	49827	77512	77512					0.06876893508649573
RVNEAREEL	9	Unmodified	_RVNEAREEL_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000134287|ENST00000256682|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.2933959960938	2	558.293819	1114.57309	-0.1204	-6.7216E-05	-0.59976	-0.00033484	-0.72016	-0.00040206	558.2933914959123	26.272	1.0097	26.354	26.091	27.1	0.081291					76	24	5	0	0	0	0.28753	1	1268	1268		77.318	0.47095	1	2806100			71026	18285	49746	49828	77513	77513					0.02038154352521815
RVNGWATL	8	Unmodified	_RVNGWATL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.22528076171875	2	458.753601	915.49265	-0.89347	-0.00040988	0.42767	0.00019619	-0.46581	-0.00021369	458.75512964012194	26.266	0.74155	26.102	25.716	26.458	-0.16331					41	21	3	0	0	0	0.027866	1	1300	1300		42.474	24.15	1	450240			71027	777	49747	49829	77514	77514					0.03152337820131379
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8824462890625	2	641.883136	1281.75172	0.89146	0.00057221	-2.0214	-0.0012975	-1.1299	-0.00072529	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	0.9728	2	12102	12078;12102		42.864	10.052	1	2810000			71028	5362	49748	49830	77515;77516	77516					0.12211243991418996
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8821411132812	2	641.883136	1281.75172	-2.5036	-0.001607	1.2649	0.00081193	-1.2386	-0.00079507	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.0292	1	11645	11645		30.318	0	1	1400600			71029	5362	49748	49830	77517	77517					0.12211243991418996
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.882568359375	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0017	1	11948	11948		36.447	6.129	1	3558500			71030	5362	49748	49830	77518	77518					0.12211243991418996
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8828735351562	2	641.883136	1281.75172	0.076302	4.8977E-05	-1.1272	-0.00072353	-1.0509	-0.00067456	641.8823173015554	93.204	1.2316	93.082	92.222	93.453	-0.12215					53	28	2	0	0	0	1.0075	1	11491	11491		35.152	10.633	1	577160			71031	5362	49748	49830	77519	77519					0.12211243991418996
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.882568359375	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0017	2	11918	11786;11918		36.447	3.6962	1	3453200			71032	5362	49748	49830	77520;77521	77521					0.12211243991418996
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	641.883136	1281.75172	-3.1216	-0.0020037	2.1505	0.0013804	-0.97109	-0.00062333	641.8843635101357	93.215	1.2308	93.075	92.21	93.441	-0.13995	-0.027633	0.0024882	NaN	35.152	77	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566990			71033	5362	49748	49830							0.12211243991418996
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	641.883136	1281.75172	-0.43971	-0.00028224	-0.76043	-0.0004881	-1.2001	-0.00077035	641.8825656983065	93.296	1.2351	93.152	92.248	93.483	-0.1441	0.048569	-0.0012487	NaN	35.152	66	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575720			71034	5362	49748	49830							0.12211243991418996
RVNPVEYSI	9	Unmodified	_RVNPVEYSI_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7922973632812	2	538.790381	1075.56621	-0.3682	-0.00019838	-0.18664	-0.00010056	-0.55484	-0.00029894	538.790197041677	50.992	0.82803	50.992	50.74	51.568	0					61	22	4	0	0	0	0.2101	2	5391	5391;5405		87.696	20.203	1	4290300			71035	5035	49749	49831	77522;77523	77522					0.03144841471953441
RVNPVEYSI	9	Unmodified	_RVNPVEYSI_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.79345703125	2	538.790381	1075.56621	-1.4477	-0.00078002	0.43179	0.00023264	-1.0159	-0.00054738	538.7904746932979	50.88	1.0945	50.967	50.416	51.511	0.087006					71	30	4	0	0	0	0.2101	2	5297	5297;5318		87.696	18.069	1	4274800			71036	5035	49749	49831	77524;77525	77524					0.03144841471953441
RVNPVEYSI	9	Unmodified	_RVNPVEYSI_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	538.790381	1075.56621	0.37606	0.00020262	-4.2115	-0.0022691	-3.8355	-0.0020665	538.7895566599602	51.006	0.53112	50.894	50.638	51.169	-0.11163	-0.084087	-0.0045774	NaN	87.696	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225930			71037	5035	49749	49831							0.03144841471953441
RVNRYFRVD	9	Unmodified	_RVNRYFRVD_					0	0	0			REV__ENST00000495790.1_1_10:32573515-32573971:-|nuORF	REV__ENST00000495790.1_1_10:32573515-32573971:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	408.2437744140625	3	408.891389	1223.65234	-0.61587	-0.00025182	-3.3521	-0.0013707	-3.968	-0.0016225	408.8901084290598	44.527	0.57588	44.423	44.168	44.744	-0.10468					18	14	2	0	0	0	0.024367	1	4124	4124		36.447	0	1	145720	+		71038	33809	49750	49832	77526	77526					0.049458460973028195
RVNSKRPHL	9	Unmodified	_RVNSKRPHL_					0	0	0			REV__ENST00000495373.5_1_3:56787557-56789160:-|nuORF	REV__ENST00000495373.5_1_3:56787557-56789160:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8306884765625	2	553.830706	1105.64686	-0.33256	-0.00018418	-1.0785	-0.00059729	-1.411	-0.00078147	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.87448	1	10917	10917		34.173	1.3601	1	6921700	+		71039	33802	49751	49833	77527	77527					0.09826167305527633
RVNVEEFY	8	Unmodified	_RVNVEEFY_					0	0	0		nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	nc|ENSG00000143156|Q9Y5B8-2|NME7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.28955078125	2	528.261456	1054.50836	-0.53354	-0.00028185	3.3285	0.0017583	2.795	0.0014765	528.2632003398692	35.817	0.41792	35.604	35.233	35.651	-0.21246					17	10	2	0	0	0	0.027866	1	2719	2719		47.916	5.4411	1	187450			71040	5613	49752	49834	77528	77528					-0.016714204534537203
RVPAFTELF	9	Unmodified	_RVPAFTELF_					0	0	0		ENST00000494484.1_1_7:44839011-44839095:+|nuORF;ENST00000435399.1_1_1:45880815-45881013:+|nuORF	ENST00000494484.1_1_7:44839011-44839095:+|nuORF	ENST00000494484.1_1_7:44839011-44839095:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2980346679688	2	540.297842	1078.58113	-0.91829	-0.00049615	1.243	0.00067157	0.32467	0.00017542	540.2984314910951	21.847	1.2273	21.758	21.453	22.68	-0.089186					73	25	5	0	0	0	0.87448	1	693	693		34.173	1.3601	1	1632900			71041	14260	49753	49835	77529	77529					0.04498333339938654
RVPATHGN	8	Unmodified	_RVPATHGN_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2460021972656	2	426.227751	850.440949	0.28849	0.00012296	-1.9056	-0.00081221	-1.6171	-0.00068925	426.2270427678283	86.898	0.38199	86.711	86.472	86.854	-0.18696					12	8	2	0	0	0	0.027866	1	10537	10537		35.618	16.258	1	83874	+		71042	24725	49754	49836	77530	77530					0.009745941262281121
RVPGARVWPL	10	Unmodified	_RVPGARVWPL_					0	0	0			REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8430786132812	2	575.845825	1149.6771	-1.2575	-0.00072414	-3.7079	-0.0021352	-4.9654	-0.0028593	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.1166	1	11167	11167		30.504	5.0535	1	6251500	+		71043	30917	49755	49837	77531	77531					0.1082452597070187
RVPGARVWPL	10	Unmodified	_RVPGARVWPL_					0	0	0			REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.843017578125	2	575.845825	1149.6771	-0.77612	-0.00044693	-4.1422	-0.0023853	-4.9183	-0.0028322	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0541	2	11193	11193;11218		38.806	9.6566	1	6382400	+		71044	30917	49755	49837	77532;77533	77532					0.1082452597070187
RVPGLRTG	8	Unmodified	_RVPGLRTG_					0	0	0		ENST00000423007.5_1_9:134378295-134378664:+|nuORF	ENST00000423007.5_1_9:134378295-134378664:+|nuORF	ENST00000423007.5_1_9:134378295-134378664:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.261962890625	2	428.261594	854.508634	-0.84173	-0.00036048	1.3058	0.00055924	0.46411	0.00019876	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0574	1	11459	11459		27.882	2.4321	1	86056000			71045	14018	49756	49838	77534	77534					0.0755604405703707
RVPGTHKDN	9	Unmodified	_RVPGTHKDN_					0	0	0			REV__nc|ENSG00000138674|O94979-2|SEC31A	REV__nc|ENSG00000138674|O94979-2|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2714233398438	2	512.270147	1022.52574	-0.70803	-0.0003627	3.204	0.0016413	2.496	0.0012786	512.2712607905927	104.7	1.035	104.57	104.16	105.19	-0.12927					66	32	3	0	0	0	0.93097	1	13024	13024		30.318	1.1682	1	187370	+		71046	23882	49757	49839	77535	77535					0.015379198721802823
RVPHNLPLP	9	Unmodified	_RVPHNLPLP_					0	0	0		ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.812744140625	2	521.811451	1041.60835	-0.37996	-0.00019827	2.8792	0.0015024	2.4992	0.0013041	521.8129367151431	41.316	0.74377	41.316	40.944	41.688	0					65	18	4	0	0	0	0.80658	1	3709	3709		38.806	0	1	14596000			71047	17221	49758	49840	77536	77536					0.08920861671003877
RVPHNLPLP	9	Unmodified	_RVPHNLPLP_					0	0	0		ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8126220703125	2	521.811451	1041.60835	-0.36354	-0.0001897	3.1628	0.0016504	2.7993	0.0014607	521.8130669238732	42.143	1.7596	42.011	41.678	43.437	-0.1322					142	49	4	0	0	0	0.80658	1	3845	3845		38.806	1.647	1	7330800			71048	17221	49758	49840	77537	77537					0.08920861671003877
RVPHNLPLP	9	Unmodified	_RVPHNLPLP_					0	0	0		ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	ENST00000585091.1_1_17:79977515-79980737:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8125610351562	2	521.811451	1041.60835	-0.21676	-0.00011311	2.9847	0.0015574	2.7679	0.0014443	521.8130103174198	42.098	1.6966	42.124	41.821	43.517	0.026016					122	47	3	0	0	0	0.80658	1	3812	3812		38.806	0	1	8235700			71049	17221	49758	49840	77538	77538					0.08920861671003877
RVPKFIDII	9	Unmodified	_RVPKFIDII_					0	0	0			REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF	REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8090209960938	2	550.844959	1099.67537	-0.92041	-0.000507	-0.31989	-0.00017621	-1.2403	-0.00068321	550.8449533263987	55.868	0.32089	55.711	55.535	55.856	-0.15656					12	8	2	0	0	0	0.024541	1	6041	6041		17.365	10.172	1	277800	+		71050	24427	49759	49841	77539	77539					0.1295147216208079
RVPKSASVSA	10	Unmodified	_RVPKSASVSA_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2906799316406	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.0393	2	10280	10256;10280		40.778	9.2484	1	10557000			71051	2069	49760	49842	77540;77541	77541					0.06628261191804086
RVPKSASVSA	10	Unmodified	_RVPKSASVSA_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2903137207031	2	501.290548	1000.56654	0.41475	0.00020791	-0.66528	-0.0003335	-0.25053	-0.00012559	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	1.1088	2	10120	10108;10120		31.53	7.0106	1	2920800			71052	2069	49760	49842	77542;77543	77543					0.06628261191804086
RVPKSASVSA	10	Unmodified	_RVPKSASVSA_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29083251953125	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	1.0992	1	10396	10396		32.812	3.6424	1	10571000			71053	2069	49760	49842	77544	77544					0.06628261191804086
RVPKSASVSA	10	Unmodified	_RVPKSASVSA_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29046630859375	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0781	2	10320	10320;10470		35.618	1.4457	1	10074000			71054	2069	49760	49842	77545;77546	77545					0.06628261191804086
RVPKSKLEVGR	11	Unmodified	_RVPKSKLEVGR_					0	0	0		ENSG00000106245|ENST00000222969|BUD31	ENSG00000106245|ENST00000222969|BUD31	ENSG00000106245|ENST00000222969|BUD31	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	634.8915405273438	2	634.893503	1267.77245	0.034626	2.1984E-05	-1.7703	-0.0011239	-1.7357	-0.001102	634.8926565060848	104.41	1.0191	104.41	104.03	105.04	-0.0032196					85	28	5	0	0	0	1.0344	1	13358	13358		29.17	3.7199	1	2042800			71055	2769	49761	49843	77547	77547					0.1492783437106482
RVPLGRGG	8	Unmodified	_RVPLGRGG_					0	0	0			REV__nc|ENSG00000125968|P41134-2|ID1	REV__nc|ENSG00000125968|P41134-2|ID1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2486572265625	2	406.248486	810.48242	0.91382	0.00037124	-0.70868	-0.0002879	0.20513	8.3334E-05	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0239	1	10803	10803		33.516	0	1	86727000	+		71056	22866	49762	49844	77548	77548					0.06959774885569914
RVPLGRSA	8	Unmodified	_RVPLGRSA_					0	0	0		ENST00000587013.5_1_19:38882915-38886805:+|nuORF	ENST00000587013.5_1_19:38882915-38886805:+|nuORF	ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.26171875	2	428.261594	854.508634	0.60688	0.0002599	-0.36221	-0.00015512	0.24467	0.00010478	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.043	1	11052	11052		30.504	5.0535	1	63872000			71057	17261	49763	49845	77549	77549					0.0755604405703707
RVPLKGPET	9	Unmodified	_RVPLKGPET_					0	0	0			REV__ENST00000274311.2_1_5:52083888-52083987:+|nuORF	REV__ENST00000274311.2_1_5:52083888-52083987:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7955017089844	2	498.795466	995.57638	3.2358	0.001614	-1.6952	-0.00084557	1.5406	0.00076844	498.79445005317547	18.158	0.74733	17.915	17.677	18.424	-0.24256					30	14	3	0	0	0	0.85329	1	263	263		35.618	5.1146	1	198740	+		71058	29828	49764	49846	77550	77550					0.07841449197189831
RVPLLGPAR	9	Unmodified	_RVPLLGPAR_					0	0	0		ENST00000393913.7_1_2:75749606-75787936:-|nuORF;ENST00000410113.5_1_2:75753312-75787936:-|nuORF;ENST00000485891.1_1_2:75745306-75787936:-|nuORF	ENST00000393913.7_1_2:75749606-75787936:-|nuORF	ENST00000393913.7_1_2:75749606-75787936:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.2574462890625	2	489.813993	977.613434	-0.28238	-0.00013831	-3.4244	-0.0016773	-3.7068	-0.0018156	489.8123537820586	105.59	0.10899	105.46	105.4	105.51	-0.12444					4	2	2	0	0	0	0.024477	1	13153	13153		20.947	0	1	29861			71059	13476	49765	49847	77551	77551					0.12373165533608699
RVPLLRTSF	9	Unmodified	_RVPLLRTSF_					0	0	0			REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2752075195312	2	544.832383	1087.65021	-0.050701	-2.7624E-05	3.203	0.0017451	3.1523	0.0017175	544.8339773464871	78.006	1.1121	77.795	77.585	78.697	-0.21087					37	26	2	0	0	0	0.024405	1	9597	9597		44.117	3.5442	1	131600	+		71060	24750	49766	49848	77552	77552					0.10989417359519393
RVPLPRVRDS	10	Unmodified	_RVPLPRVRDS_					0	0	0		ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8561401367188	2	597.856921	1193.69929	-1.6739	-0.0010008	0.44776	0.00026769	-1.2261	-0.00073306	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.0616	1	11762	11762		37.812	10.764	1	4454900			71061	16899	49767	49849	77553	77553					0.11018705648461946
RVPLPRVRDS	10	Unmodified	_RVPLPRVRDS_					0	0	0		ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8558959960938	2	597.856921	1193.69929	-1.0361	-0.00061944	-0.20101	-0.00012018	-1.2371	-0.00073961	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.0393	1	11727	11727		40.778	5.6261	1	4942300			71062	16899	49767	49849	77554	77554					0.11018705648461946
RVPLPRVRDS	10	Unmodified	_RVPLPRVRDS_					0	0	0		ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8564453125	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0002	2	11414	11343;11414		45.972	14.442	1	5655800			71063	16899	49767	49849	77555;77556	77556					0.11018705648461946
RVPLPRVRDS	10	Unmodified	_RVPLPRVRDS_					0	0	0		ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8565063476562	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0002	1	11454	11454		45.972	5.9141	1	5598500			71064	16899	49767	49849	77557	77557					0.11018705648461946
RVPMPGRRD	9	Unmodified	_RVPMPGRRD_					0	0	0		ENST00000369776.8_1_X:153640293-153648389:+|nuORF	ENST00000369776.8_1_X:153640293-153648389:+|nuORF	ENST00000369776.8_1_X:153640293-153648389:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.322265625	2	542.295642	1082.57673	-1.148	-0.00062256	0.11027	5.9801E-05	-1.0377	-0.00056276	542.295574288226	60.553	0.95008	60.34	59.962	60.912	-0.21339					36	24	2	0	0	0	0.024436	1	6910	6910		30.504	0	1	468100			71065	12940	49768	49850	77558	77558					0.03874545645408034
RVPNVGGQ	8	Unmodified	_RVPNVGGQ_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.559814453125	2	413.730126	825.4457	-0.33183	-0.00013729	0.79842	0.00033033	0.46658	0.00019304	413.7302933692884	26.639	0.53444	26.471	26.188	26.723	-0.16816					21	12	2	0	0	0	0.027866	1	1373	1373		7.1934	0.8807	1	183870	+		71066	23428	49769	49851	77559	77559					0.025994782690077045
RVPPLRRRQ	9	Unmodified	_RVPPLRRRQ_					0	0	0			REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.373072	1176.73159	-0.63973	-0.00037704	4.1221	0.0024294	3.4823	0.0020524	589.3752361944755	93.598	0.17501	93.454	93.308	93.483	-0.1441					6	3	2	0	0	0	0.024523	1	11508	11508		15.642	5.9362	1	52390	+		71067	37066	49770	49852	77560	77560					0.15029537842110585
RVPPPPQSV	9	Unmodified	_RVPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-5|SHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.78240966796875	2	488.782359	975.550165	-0.21127	-0.00010327	0.31207	0.00015254	0.1008	4.927E-05	488.782273780244	36.447	1.6353	36.447	35.924	37.559	0					159	44	6	0	0	0	0.013924	7	2905	2875;2892;2905;2919;2931;2943;2954		167.23	48.486	1	4966000			71068	6830	49771	49853	77561;77562;77563;77564;77565;77566;77567	77563					0.06141180025713311
RVPPPPQSV	9	Unmodified	_RVPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-5|SHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7825622558594	2	488.782359	975.550165	-0.71225	-0.00034814	0.76574	0.00037428	0.053488	2.6144E-05	488.78249130760076	36.307	1.6742	36.265	35.726	37.4	-0.042458					150	45	6	0	0	0	0.030064	7	2909	2836;2852;2865;2885;2896;2909;2919		141.52	40.453	1	4943400			71069	6830	49771	49853	77568;77569;77570;77571;77572;77573;77574	77573					0.06141180025713311
RVPPPPQSV	9	Unmodified	_RVPPPPQSV_					0	0	0		nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1	nc|ENSG00000160691|P29353-5|SHC1	nc|ENSG00000160691|P29353-5|SHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.78228759765625	2	488.782359	975.550165	-0.74066	-0.00036202	0.86027	0.00042048	0.11961	5.8462E-05	488.78256224119633	36.408	1.6766	36.446	35.892	37.568	0.038044					158	45	6	0	0	0	0.016542	7	2852	2815;2827;2840;2852;2869;2880;2892		154.12	47.111	1	4722700			71070	6830	49771	49853	77575;77576;77577;77578;77579;77580;77581	77578					0.06141180025713311
RVPPRSTG	8	Unmodified	_RVPPRSTG_					0	0	0			REV__ENST00000296657.6_1_5:10653441-10653774:+|nuORF	REV__ENST00000296657.6_1_5:10653441-10653774:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2513427734375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	0.97924	2	9391	9391;9548		40.573	6.4001	1	2257900	+		71071	30000	49772	49854	77582;77583	77582					0.04839453677379879
RVPPRSTG	8	Unmodified	_RVPPRSTG_					0	0	0			REV__ENST00000296657.6_1_5:10653441-10653774:+|nuORF	REV__ENST00000296657.6_1_5:10653441-10653774:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.251708984375	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0338	1	9550	9550		31.955	6.5047	1	2292300	+		71072	30000	49772	49854	77584	77584					0.04839453677379879
RVPPRSTG	8	Unmodified	_RVPPRSTG_					0	0	0			REV__ENST00000296657.6_1_5:10653441-10653774:+|nuORF	REV__ENST00000296657.6_1_5:10653441-10653774:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25140380859375	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0338	1	9384	9384		31.955	0.42505	1	1872200	+		71073	30000	49772	49854	77585	77585					0.04839453677379879
RVPQARAV	8	Unmodified	_RVPQARAV_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.77496337890625	2	448.774868	895.535184	-0.31305	-0.00014049	0.65615	0.00029447	0.3431	0.00015398	448.7750051372612	23.272	0.96231	23.211	22.981	23.943	-0.060862					45	22	3	0	0	0	0.52467	2	898	885;898		83.287	11.084	1	932010			71074	8829	49773	49855	77586;77587	77587					0.08323732948372253
RVPQARAV	8	Unmodified	_RVPQARAV_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7748718261719	2	448.774868	895.535184	-0.44844	-0.00020125	0.74446	0.0003341	0.29602	0.00013285	448.77505496027175	23.179	0.97516	23.255	23.026	24.001	0.076241					45	22	3	0	0	0	0.68535	1	853	853		68.485	10.673	1	870350			71075	8829	49773	49855	77588	77588					0.08323732948372253
RVPRAHSPGI	10	Unmodified	_RVPRAHSPGI_					0	0	0		ENST00000265634.3_1_7:98257984-98258137:+|nuORF	ENST00000265634.3_1_7:98257984-98258137:+|nuORF	ENST00000265634.3_1_7:98257984-98258137:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3165283203125	2	545.317432	1088.62031	-0.40471	-0.0002207	-1.1125	-0.00060665	-1.5172	-0.00082734	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	1.089	1	10896	10896		34.173	1.3601	1	3438300			71076	11599	49774	49856	77589	77589					0.07954478414194455
RVPRAHSPGI	10	Unmodified	_RVPRAHSPGI_					0	0	0		ENST00000265634.3_1_7:98257984-98258137:+|nuORF	ENST00000265634.3_1_7:98257984-98258137:+|nuORF	ENST00000265634.3_1_7:98257984-98258137:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3167724609375	2	545.317432	1088.62031	-0.23183	-0.00012642	-1.2024	-0.00065567	-1.4342	-0.00078209	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0393	1	11121	11121		40.778	1.972	1	11601000			71077	11599	49774	49856	77590	77590					0.07954478414194455
RVPRGTLSA	9	Unmodified	_RVPRGTLSA_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|23|3|sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|23|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7861633300781	2	478.785433	955.556313	-0.56814	-0.00027202	1.3661	0.00065407	0.79797	0.00038206	478.78604379053655	91.206	1.2204	91.206	90.804	92.024	0					59	28	4	0	0	0	0.72875	1	11546	11546		44.117	6.3053	1	2453400	+		71078	37597	49775	49857	77591	77591					0.07675698257241947
RVPRGTLSA	9	Unmodified	_RVPRGTLSA_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|23|3|sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|23|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7859191894531	2	478.785433	955.556313	-0.055329	-2.6491E-05	0.63552	0.00030428	0.58019	0.00027779	478.7857091029597	91.227	1.7279	91.215	90.702	92.43	-0.012375					76	41	4	0	0	0	0.83071	1	11518	11518		37.159	2.9866	1	2240500	+		71079	37597	49775	49857	77592	77592					0.07675698257241947
RVPRGTLSA	9	Unmodified	_RVPRGTLSA_					0	0	0			REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|23|3|sense	REV__SVA_B_dup218|chr5:42978716-42979809:+|4.591250840534983|0.0345489623625517|7.05|501.0|23|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.7854309082031	2	478.785433	955.556313	-0.92729	-0.00044397	0.92785	0.00044424	0.00055528	2.6586E-07	478.78580113422663	91.323	1.428	91.174	90.813	92.241	-0.1487					71	33	4	0	0	0	0.80003	1	11206	11206		39.253	5.0803	1	2668700	+		71080	37597	49775	49857	77593	77593					0.07675698257241947
RVPRLSSA	8	Unmodified	_RVPRLSSA_					0	0	0			REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	REV__ENST00000379705.7_1_13:38357476-38444175:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2668762207031	2	443.266876	884.519199	0.0095454	4.2312E-06	0.22489	9.9684E-05	0.23443	0.00010392	443.2668808099724	85.766	1.0554	85.708	85.355	86.411	-0.05761					65	24	4	0	0	0	1.0574	1	10734	10734		24.203	2.5004	1	1292400	+		71081	31444	49776	49858	77594	77594					0.07232026711471917
RVPRLTGT	8	Unmodified	_RVPRLTGT_					0	0	0			REV__ENSG00000110042|ENST00000227451|DTX4	REV__ENSG00000110042|ENST00000227451|DTX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.27410888671875	2	450.274701	898.534849	-1.3767	-0.00061991	0.3574	0.00016093	-1.0193	-0.00045898	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0338	2	11317	11317;11353		31.955	0	1	56225000	+		71082	21831	49777	49859	77595;77596	77595					0.08152313228526964
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3164672851562	2	545.317432	1088.62031	-0.23737	-0.00012944	-1.2555	-0.00068463	-1.4928	-0.00081407	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	0.83071	2	10941	10918;10941		37.159	4.6304	1	3529900	+		71083	31372	49778	49860	77597;77598	77598					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3164672851562	2	545.317432	1088.62031	-0.6354	-0.0003465	-0.75836	-0.00041355	-1.3938	-0.00076004	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.70186	5	11342	11150;11222;11282;11306;11342		45.952	10.334	1	11705000	+		71084	31372	49778	49860	77599;77600;77601;77602;77603	77603					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3164672851562	2	545.317432	1088.62031	-0.23183	-0.00012642	-1.2024	-0.00065567	-1.4342	-0.00078209	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.70186	5	11253	11133;11181;11253;11362;11374		45.952	10.334	1	11601000	+		71085	31372	49778	49860	77604;77605;77606;77607;77608	77606					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3167724609375	2	545.317432	1088.62031	-0.30487	-0.00016625	-1.2147	-0.00066239	-1.5196	-0.00082864	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	0.75397	1	10945	10945		42.396	6.7778	1	3635800	+		71086	31372	49778	49860	77609	77609					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3168334960938	2	545.317432	1088.62031	-0.46982	-0.0002562	-1.0056	-0.00054839	-1.4754	-0.00080459	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.70186	3	11086	11074;11086;11291		45.952	20.378	1	12792000	+		71087	31372	49778	49860	77610;77611;77612	77611					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3164672851562	2	545.317432	1088.62031	-0.35128	-0.00019156	-1.0798	-0.00058884	-1.4311	-0.0007804	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	0.72875	5	10621	10491;10621;10671;10707;10719		44.117	14.947	1	4936700	+		71088	31372	49778	49860	77613;77614;77615;77616;77617	77614					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3165893554688	2	545.317432	1088.62031	-0.95668	-0.0005217	-0.29702	-0.00016197	-1.2537	-0.00068367	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.70186	8	10849	10768;10778;10813;10849;10861;10897;11041;11067		45.952	8.1404	1	15621000	+		71089	31372	49778	49860	77618;77619;77620;77621;77622;77623;77624;77625	77621					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165893554688	2	545.317432	1088.62031	-0.47781	-0.00026056	-0.87443	-0.00047684	-1.3522	-0.0007374	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.70186	9	11094	10782;10863;10911;10971;10983;11031;11081;11094;11251		45.952	15.448	1	17400000	+		71090	31372	49778	49860	77626;77627;77628;77629;77630;77631;77632;77633;77634	77633					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	545.317432	1088.62031	-0.4393	-0.00023956	-1.1099	-0.00060523	-1.5492	-0.00084479	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	0.83071	4	10614	10614;10627;10651;10713		37.159	11.585	1	5204600	+		71091	31372	49778	49860	77635;77636;77637;77638	77635					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165283203125	2	545.317432	1088.62031	-0.30292	-0.00016519	-1.1181	-0.00060972	-1.421	-0.00077491	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	0.70186	4	11216	10812;11017;11091;11216		45.952	11.779	1	17068000	+		71092	31372	49778	49860	77639;77640;77641;77642	77642					0.07954478414194455
RVPRSPAS	8	Unmodified	_RVPRSPAS_					0	0	0		ENST00000331434.6_1_8:146277861-146278117:+|nuORF;ENST00000524395.5_1_8:146277868-146278117:+|nuORF	ENST00000331434.6_1_8:146277861-146278117:+|nuORF	ENST00000331434.6_1_8:146277861-146278117:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2510681152344	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.043	1	9649	9649		30.504	2.2494	1	1590300			71093	12343	49779	49861	77643	77643					0.04839453677379879
RVPRSPAS	8	Unmodified	_RVPRSPAS_					0	0	0		ENST00000331434.6_1_8:146277861-146278117:+|nuORF;ENST00000524395.5_1_8:146277868-146278117:+|nuORF	ENST00000331434.6_1_8:146277861-146278117:+|nuORF	ENST00000331434.6_1_8:146277861-146278117:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2514953613281	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0106	1	9403	9403		35.618	1.4457	1	2257900			71094	12343	49779	49861	77644	77644					0.04839453677379879
RVPRVETG	8	Unmodified	_RVPRVETG_					0	0	0		ENST00000586342.1_1_19:892595-892778:-|nuORF	ENST00000586342.1_1_19:892595-892778:-|nuORF	ENST00000586342.1_1_19:892595-892778:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2641906738281	2	457.264333	912.514114	0.383	0.00017513	-0.35618	-0.00016287	0.026819	1.2263E-05	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	1.043	1	9782	9782		30.504	1.3541	1	4505400			71095	17240	49780	49862	77645	77645					0.05435722848858404
RVPTAPAVF	9	Unmodified	_RVPTAPAVF_					0	0	0		ENST00000343916.7_1_20:61461923-61467875:+|nuORF;ENST00000469802.5_1_20:61464351-61467803:+|nuORF;ENST00000462700.5_1_20:61464351-61470045:+|nuORF	ENST00000343916.7_1_20:61461923-61467875:+|nuORF	ENST00000343916.7_1_20:61461923-61467875:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2775573730469	2	479.279452	956.544351	0.51465	0.00024666	-4.4703	-0.0021425	-3.9557	-0.0018959	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.88411	1	10329	10329		33.516	3.0119	1	4752300			71096	12539	49781	49863	77646	77646					0.0643408151404401
RVPTMGAL	8	Unmodified	_RVPTMGAL_					0	0	0			REV__ENSG00000185477|ENST00000609438|GPRIN3	REV__ENSG00000185477|ENST00000609438|GPRIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.59320068359375	2	422.739105	843.463658	0.85904	0.00036315	-3.3444	-0.0014138	-2.4854	-0.0010507	422.7377149395956	50.927	0.74111	50.747	50.282	51.023	-0.18071					38	19	3	0	0	0	0.027866	1	5124	5124		28.254	8.8943	1	724940	+		71097	27766	49782	49864	77647	77647					0.03566477199490237
RVPVARGG	8	Unmodified	_RVPVARGG_					0	0	0		ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.2488708496094	2	406.248486	810.48242	1.829	0.00074302	-4.0608	-0.0016497	-2.2318	-0.00090665	406.2463468083273	90.091	1.5255	90.104	89.55	91.076	0.013443					77	36	3	0	0	0	1.0574	1	11306	11306		25.45	1.2474	1	732510			71098	12972	49783	49865	77648	77648					0.06959774885569914
RVPVARGG	8	Unmodified	_RVPVARGG_					0	0	0		ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2488708496094	2	406.248486	810.48242	0.063182	2.5668E-05	-0.17247	-7.0065E-05	-0.10928	-4.4397E-05	406.2481263953066	90.192	1.1204	90.067	89.632	90.753	-0.12512					54	26	3	0	0	0	1.0239	1	11046	11046		33.516	6.7195	1	813700			71099	12972	49783	49865	77649	77649					0.06959774885569914
RVPVCDPTAG	10	Unmodified	_RVPVCDPTAG_					0	0	0			REV__SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant	REV__SVEP1|p.I3096Nfs*23|1|0.11|ENSG00000165124|chr9:110406313-110406314|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.26885986328125	2	507.755484	1013.49641	-0.28578	-0.00014511	-3.4023	-0.0017275	-3.6881	-0.0018726	507.7536252682119	45.361	0.5721	45.108	44.786	45.359	-0.25252					27	15	2	0	0	0	0.03519	1	4230	4230		39.253	2.9352	1	1153100	+		71100	25842	49784	49866	77650	77650					-0.009793604683068224
RVPVNVTST	9	Unmodified	_RVPVNVTST_					0	0	0		ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2904357910156	2	486.777274	971.539994	-1.2331	-0.00060023	-2.5106	-0.0012221	-3.7437	-0.0018223	486.7763101687835	27.434	0.63141	27.515	27.319	27.951	0.081293					29	16	3	0	0	0	0.02435	1	1474	1474		42.396	0	1	698320			71101	5483	49785	49867	77651	77651					0.053085723004642205
RVPWLWQL	8	Unmodified	_RVPWLWQL_					0	0	0			REV__ENST00000437774.5_1_16:90044037-90045221:+|nuORF	REV__ENST00000437774.5_1_16:90044037-90045221:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3184204101562	2	549.316369	1096.61818	0.027734	1.5235E-05	2.4995	0.001373	2.5273	0.0013883	549.3177491805235	99.653	0.69202	99.653	99.179	99.871	0					46	15	4	0	0	0	1.0574	1	12743	12743		25.45	2.4077	1	438170	+		71102	32487	49786	49868	77652	77652					0.07374049676354844
RVQEAIAEV	9	Unmodified	_RVQEAIAEV_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7823181152344	2	507.782556	1013.55056	0.06414	3.2569E-05	-0.30742	-0.0001561	-0.24328	-0.00012353	507.7823300627731	42.309	1.1301	42.309	42.02	43.15	0					78	31	4	0	0	0	0.37611	2	3890	3869;3890		67.494	2.7257	1	6810800			71103	3776	49787	49869	77653;77654	77654					0.044325549548943854
RVQEAIAEV	9	Unmodified	_RVQEAIAEV_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7823486328125	2	507.782556	1013.55056	-0.18102	-9.1919E-05	0.14382	7.303E-05	-0.0372	-1.8889E-05	507.7825483532491	42.467	1.3916	42.335	42.082	43.474	-0.13219					87	38	5	0	0	0	0.30449	1	3892	3892		75.043	0.78827	1	6701100			71104	3776	49787	49869	77655	77655					0.044325549548943854
RVQGVSITR	9	Unmodified	_RVQGVSITR_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.30352783203125	2	508.30399	1014.59343	-0.56885	-0.00028915	-0.97208	-0.00049411	-1.5409	-0.00078326	508.30381095689006	26.178	1.9952	26.178	25.694	27.689	0					146	46	6	0	0	0	0.23085	1	1319	1319		84.916	8.1414	1	77267000			71105	4751	49788	49870	77656	77656					0.08671369802993922
RVQGYDGYF	9	Unmodified	_RVQGYDGYF_					0	0	0		ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1	ENSG00000009694|ENST00000371130|TENM1	ENSG00000009694|ENST00000371130|TENM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8291015625	2	552.759081	1103.50361	-0.86891	-0.0004803	0.45395	0.00025093	-0.41495	-0.00022937	552.75966441133	48.729	0.14093	48.796	48.729	48.87	0.066795					5	3	2	0	0	0	0.024436	1	4919	4919		30.504	0	1	51759			71106	858	49789	49871	77657	77657					-0.04400304596242677
RVQKDRVLE	9	Unmodified	_RVQKDRVLE_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;EVPL|p.L1960Qfs*2|1|0.32|ENSG00000167880|chr17:76007313-76007326|GATCATCCCGGAGA/-|frameshift_variant	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.8355712890625	2	571.835654	1141.65676	1.0619	0.00060722	-1.3907	-0.00079526	-0.32883	-0.00018804	571.8347907192697	22.925	0.82631	22.734	22.341	23.167	-0.19117					29	17	2	0	0	0	0.75397	1	829	829		42.396	5.237	1	363840			71107	7746	49790	49872	77658	77658					0.09159310520249164
RVQLHIVSSR	10	Unmodified	_RVQLHIVSSR_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.857421875	2	597.856921	1193.69929	-0.76793	-0.00045911	-0.079867	-4.7749E-05	-0.8478	-0.00050686	597.8568468929183	94.954	0.64822	94.816	94.506	95.155	-0.13779					39	14	3	0	0	0	1.1286	1	11693	11693		25.574	1.0549	1	538710	+		71108	19655	49791	49873	77659	77659					0.11018705648439209
RVQLHIVSSR	10	Unmodified	_RVQLHIVSSR_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8565673828125	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.381	1	91.232	90.732	91.732	-0.1487								0	0	0	0.74882	1	11200	11200		30.318	2.4355	1		+		71109	19655	49791	49873	77660	77660					0.11018705648439209
RVQLPNNFL	9	Unmodified	_RVQLPNNFL_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.79833984375	2	550.81419	1099.61383	0.24275	0.00013371	2.1996	0.0012116	2.4424	0.0013453	550.8153327740047	55.718	0.3564	55.718	55.536	55.892	0					16	9	2	0	0	0	0.024457	1	6177	6177		37.159	10.363	1	171110			71110	8446	49792	49874	77661	77661					0.06800540462791105
RVQLTRLN	8	Unmodified	_RVQLTRLN_					0	0	0			REV__ENST00000357582.2_1_1:27693215-27693353:-|nuORF	REV__ENST00000357582.2_1_1:27693215-27693353:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3059997558594	2	500.306532	998.598512	-0.54611	-0.00027322	-0.28961	-0.00014489	-0.83572	-0.00041812	500.3063434571611	33.051	0.65587	33.051	32.865	33.521	0					34	17	2	0	0	0	0.71063	1	2352	2352		66.429	5.4573	1	3629600	+		71111	30833	49793	49875	77662	77662					0.09915673665591385
RVQLTRLN	8	Unmodified	_RVQLTRLN_					0	0	0			REV__ENST00000357582.2_1_1:27693215-27693353:-|nuORF	REV__ENST00000357582.2_1_1:27693215-27693353:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3046875	2	500.306532	998.598512	0.34762	0.00017392	-1.3287	-0.00066478	-0.98112	-0.00049086	500.305823062621	32.879	0.85462	32.942	32.69	33.544	0.062885					38	22	3	0	0	0	0.91956	1	2257	2257		49.442	0	1	2979700	+		71112	30833	49793	49875	77663	77663					0.09915673665591385
RVQPDGKVLY	10	Unmodified	_RVQPDGKVLY_					0	0	0		nc|ENSG00000146276|P24046-3|GABRR1;nc|ENSG00000146276|P24046-2|GABRR1;ENSG00000146276|ENST00000454853|GABRR1	nc|ENSG00000146276|P24046-3|GABRR1	nc|ENSG00000146276|P24046-3|GABRR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.7745971679688	2	587.83258	1173.65061	0.078018	4.5862E-05	3.5585	0.0020918	3.6365	0.0021377	587.8343543252215	79.96	0.71166	79.714	79.362	80.074	-0.2465					28	16	3	0	0	0	0.03519	1	9575	9575		56.721	18.91	1	167230			71113	5871	49794	49876	77664	77664					0.07072792288727214
RVQPDGKVLY	10	Unmodified	_RVQPDGKVLY_					0	0	0		nc|ENSG00000146276|P24046-3|GABRR1;nc|ENSG00000146276|P24046-2|GABRR1;ENSG00000146276|ENST00000454853|GABRR1	nc|ENSG00000146276|P24046-3|GABRR1	nc|ENSG00000146276|P24046-3|GABRR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.7747192382812	2	587.83258	1173.65061	-0.53488	-0.00031442	4.1828	0.0024588	3.6479	0.0021444	587.8346447712054	79.886	0.62909	79.667	79.327	79.957	-0.21922					25	14	2	0	0	0	0.03519	1	9589	9589		45.972	19.279	1	191260			71114	5871	49794	49876	77665	77665					0.07072792288727214
RVQQAVAR	8	Unmodified	_RVQQAVAR_					0	0	0		ENST00000523994.1_1_8:37620177-37624049:+|nuORF;ENST00000520073.5_1_8:37620150-37623956:+|nuORF;ENSG00000147471|ENST00000328195|PLPBP	ENST00000523994.1_1_8:37620177-37624049:+|nuORF	ENST00000523994.1_1_8:37620177-37624049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.759033203125	2	464.277775	926.540997	-0.051688	-2.3998E-05	1.2905	0.00059913	1.2388	0.00057514	464.2785310773524	53.711	0.77211	53.711	53.337	54.109	0					52	21	4	0	0	0	0.027866	1	5781	5781		17.365	0	1	2191400			71115	5970	49795	49877	77666	77666					0.07478831460036872
RVQTDAFVS	9	Unmodified	_RVQTDAFVS_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000478311.1_1_2:27587269-27587801:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.7692565917969	2	511.766906	1021.51926	0.36826	0.00018846	3.3329	0.0017057	3.7011	0.0018941	511.76855330880454	86.24	1.2731	86.24	85.543	86.816	0					60	29	4	0	0	0	0.16468	1	10833	10833		96.19	8.4361	1	2090100			71116	3418	49796	49878	77667	77667					0.009359819208157205
RVQVQKAFAGT	11	Unmodified	_RVQVQKAFAGT_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.22198486328125	3	402.231412	1203.67241	1.7657	0.00071021	0.91988	0.00037	2.6856	0.0010802	402.2317053514576	24.453	0.61278	24.272	23.848	24.461	-0.18089					28	13	3	0	0	0	0.02473	1	1044	1044		21.032	6.3386	1	76875			71117	10628	49797	49879	77668	77668					0.07871597037274114
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.2987670898438	2	560.298904	1118.58326	-1.1732	-0.00065732	0.56088	0.00031426	-0.61228	-0.00034306	560.2991717218564	38.283	0.89902	38.283	38.003	38.902	0					66	24	4	0	0	0	0.5973	1	3196	3196		52.937	0	1	5637100			71118	18628;1455;18074	49798	49880	77669	77669					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.2987670898438	2	560.298904	1118.58326	-1.1127	-0.00062345	0.3193	0.0001789	-0.79342	-0.00044455	560.299037602097	38.211	1.3662	38.128	37.777	39.143	-0.082512					96	37	4	0	0	0	0.32811	1	3171	3171		71.877	6.4121	1	5561600			71119	18628;1455;18074	49798	49880	77670	77670					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.298828125	2	560.298904	1118.58326	-1.7176	-0.00096238	1.0426	0.00058416	-0.67502	-0.00037821	560.299386236912	38.417	1.083	38.444	38.162	39.245	0.027275					86	29	5	0	0	0	0.14181	1	3180	3180		101.25	24.478	1	5377500			71120	18628;1455;18074	49798	49880	77671	77671					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.2981567382812	2	560.298904	1118.58326	-0.93561	-0.00052422	0.28569	0.00016007	-0.64992	-0.00036415	560.2990566763119	38.366	1.0075	38.187	37.876	38.883	-0.17929					85	28	5	0	0	0	0.23085	3	3185	3150;3173;3185		84.916	7.5979	1	10531000			71121	18628;1455;18074	49798	49880	77672;77673;77674	77674					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.2982788085938	2	560.298904	1118.58326	-0.76556	-0.00042894	0.070627	3.9572E-05	-0.69493	-0.00038937	560.2989624211722	38.387	0.9925	38.165	37.866	38.858	-0.22149					74	27	5	0	0	0	0.56934	2	3151	3151;3173		54.776	3.4409	1	10578000			71122	18628;1455;18074	49798	49880	77675;77676	77675					0.028707620777595366
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-14|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-2|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.2988891601562	2	560.298904	1118.58326	-0.62717	-0.0003514	-0.14608	-8.1848E-05	-0.77325	-0.00043325	560.2988368147162	38.408	1.1033	38.19	37.926	39.029	-0.21849					74	30	4	0	0	0	0.45795	2	3172	3148;3172		62.107	16.135	1	10207000			71123	18628;1455;18074	49798	49880	77677;77678	77678					0.028707620777595366
RVRDLTIQKA	10	Unmodified	_RVRDLTIQKA_					0	0	0		ENST00000474184.1_1_2:136736721-136740991:-|nuORF;ENSG00000115866|ENST00000264161|DARS1	ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENST00000474184.1_1_2:136736721-136740991:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.5806884765625	3	400.578811	1198.7146	0.70335	0.00028175	3.5435	0.0014195	4.2469	0.0017012	400.5801374909674	110.7	0.47864	110.58	110.51	110.99	-0.12525					42	17	3	0	0	0	1.1161	1	13603	13603		30.569	1.3988	1	1160800			71124	3496	49799	49881	77679	77679					0.12319572445653648
RVRDRVKLTA	10	Unmodified	_RVRDRVKLTA_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant;REV__ENSG00000177189|ENST00000379565|RPS6KA3	REV__ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.3755493164062	2	607.37802	1212.74149	-0.023589	-1.4328E-05	-1.0002	-0.00060753	-1.0238	-0.00062186	607.3773004159782	97.764	0.65714	97.627	97.331	97.988	-0.1367					27	15	2	0	0	0	1.118	1	12076	12076		30.318	2.4355	1	250600	+		71125	22369;27089	49800	49882	77680	77680					0.14362681056832116
RVREIAET	8	Unmodified	_RVREIAET_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2966613769531	2	487.274898	972.535243	-0.074497	-3.63E-05	-2.0873	-0.0010171	-2.1618	-0.0010534	487.2742066567265	67.298	1.4232	67.298	66.755	68.179	0					58	35	2	0	0	0	0.027866	1	8054	8054		42.396	16.822	1	273650	+		71126	19864	49801	49883	77681	77681					0.04787688157693992
RVREIAET	8	Unmodified	_RVREIAET_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.274898	972.535243	-0.21649	-0.00010549	-0.11453	-5.5808E-05	-0.33102	-0.0001613	487.27576336291827	67.371	0.45622	67.141	66.893	67.35	-0.22949	-0.07832	0.0013638	NaN	42.396	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93737	+		71127	19864	49801	49883							0.04787688157693992
RVRIAPKVLLA	11	Unmodified	_RVRIAPKVLLA_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	618.4214477539062	2	618.419157	1234.82376	0.01464	9.0535E-06	3.0088	0.0018607	3.0235	0.0018698	618.420819603695	102.93	0.39944	102.8	102.58	102.98	-0.12724					23	9	3	0	0	0	1.0872	1	12785	12785		14.865	4.5996	1	708130			71128	3093	49802	49884	77682	77682					0.2157420313581042
RVRIAPKVLLA	11	Unmodified	_RVRIAPKVLLA_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	618.419157	1234.82376	0.059389	3.6727E-05	2.7052	0.001673	2.7646	0.0017097	618.4207803850586	102.91	0.1604	102.91	102.85	103.01	0.0054245	0.093722	-0.00055415	NaN	14.865	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96770			71129	3093	49802	49884							0.2157420313581042
RVRIAPKVLLA	11	Unmodified	_RVRIAPKVLLA_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	618.419157	1234.82376	0.24923	0.00015413	2.8591	0.0017681	3.1083	0.0019223	618.420812640681	102.99	0.31987	102.82	102.59	102.91	-0.17034	0.0018741	-0.0003638	NaN	14.865	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718280			71130	3093	49802	49884							0.2157420313581042
RVRKPLITWEK	11	Unmodified	_RVRKPLITWEK_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.3223571777344	3	475.961144	1424.8616	0.29349	0.00013969	-0.38678	-0.00018409	-0.093288	-4.4402E-05	475.9609698230964	67.036	1.8609	67.06	66.643	68.504	0.023903					78	46	2	0	0	0	0.024816	1	7856	7856		16.53	6.8837	1	179980			71131	8786	49803	49885	77683	77683					0.16616669330596778
RVRKPLITWEK	11	Unmodified	_RVRKPLITWEK_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	475.961144	1424.8616	0.8102	0.00038562	-0.87627	-0.00041707	-0.06607	-3.1447E-05	475.96074182613614	67.065	1.6293	67.065	66.588	68.217	0	0.0048642	-0.00057499	NaN	11.932	73	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264760			71132	8786	49803	49885							0.16616669330596778
RVRKTSLD	8	Unmodified	_RVRKTSLD_					0	0	0		nc|ENSG00000165887|Q9GZV1-2|ANKRD2;ENSG00000165887|ENST00000370655|ANKRD2;nc|ENSG00000165887|Q9GZV1|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7906799316406	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	1.0516	1	10406	10406		29.15	0	1	2003200			71133	7479	49804	49886	77684	77684					0.07903680911670108
RVRLGNKE	8	Unmodified	_RVRLGNKE_					0	0	0		ENST00000604123.5_1_19:41860151-41884317:+|nuORF	ENST00000604123.5_1_19:41860151-41884317:+|nuORF	ENST00000604123.5_1_19:41860151-41884317:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.29052734375	2	486.290882	970.567212	-0.49887	-0.00024259	-0.86248	-0.00041942	-1.3614	-0.00066201	486.29060350488385	27.569	2.2712	27.556	27.101	29.372	-0.012983					129	57	5	0	0	0	0.845	2	1513	1502;1513		55.504	3.3386	1	37106000			71134	17552	49805	49887	77685;77686	77686					0.08075100631526766
RVRLPDSA	8	Unmodified	_RVRLPDSA_					0	0	0			REV__ENSG00000164683|ENST00000354724|HEY1	REV__ENSG00000164683|ENST00000354724|HEY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2640380859375	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0574	1	9654	9654		26.796	1.3459	1	3503800	+		71135	25791	49806	49888	77687	77687					0.05435722848858404
RVRNSNNLK	9	Unmodified	_RVRNSNNLK_					0	0	0		ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.79833984375	2	550.817796	1099.62104	-0.24288	-0.00013378	0.58371	0.00032152	0.34083	0.00018773	550.8179336524612	18.425	0.58957	18.293	18.056	18.645	-0.13148					16	11	2	0	0	0	0.024495	1	267	267		34.173	3.6689	1	27323			71136	4561	49807	49889	77688	77688					0.07521273063207445
RVRRDPPN	8	Unmodified	_RVRRDPPN_					0	0	0		ENST00000571954.5_1_17:80918331-81006625:-|nuORF;ENSG00000175711|ENST00000320865|B3GNTL1	ENST00000571954.5_1_17:80918331-81006625:-|nuORF	ENST00000571954.5_1_17:80918331-81006625:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3238830566406	2	505.286131	1008.55771	0.1229	6.2101E-05	-0.20239	-0.00010226	-0.079484	-4.0162E-05	505.28640572737544	79.153	0.20235	78.934	78.873	79.076	-0.21923					8	4	2	0	0	0	0.027866	1	9459	9459		34.173	7.4796	1	163390			71137	8584	49808	49890	77689	77689					0.05377332345983632
RVRRIAAR	8	Unmodified	_RVRRIAAR_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8034362792969	2	499.328134	996.641714	-0.43674	-0.00021808	2.1733	0.0010852	1.7366	0.00086711	499.32911294527855	53.806	0.67451	53.659	53.346	54.02	-0.14723					38	18	3	0	0	0	0.027866	1	5764	5764		23.042	0	1	850550	+		71138	27627	49809	49891	77690	77690					0.1432590823354758
RVRSARVLASP	11	Unmodified	_RVRSARVLASP_					0	0	0		ENST00000253686.6_1_3:15106694-15106808:-|nuORF	ENST00000253686.6_1_3:15106694-15106808:-|nuORF	ENST00000253686.6_1_3:15106694-15106808:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.3695068359375	2	606.370195	1210.72584	-0.18686	-0.0001133	-1.037	-0.00062883	-1.2239	-0.00074214	606.3694060704071	92.814	2.8002	92.67	91.745	94.545	-0.14411					184	65	4	0	0	0	1.0292	1	11476	11476		30.318	0	1	585740			71139	11371	49810	49892	77691	77691					0.12890394539795125
RVRSLHIMAR	10	Unmodified	_RVRSLHIMAR_					0	0	0			REV__nc|ENSG00000096070|Q9ULD4-3|BRPF3	REV__nc|ENSG00000096070|Q9ULD4-3|BRPF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8706665039062	2	619.866766	1237.71898	0.47563	0.00029482	4.2159	0.0026133	4.6915	0.0029081	619.8691158640986	96.559	0.51159	96.423	96.101	96.613	-0.13671					29	11	3	0	0	0	1.118	1	11933	11933		30.318	0	1	188740	+		71140	20981	49811	49893	77692	77692					0.10962758387586291
RVRVSGQGL	9	Unmodified	_RVRVSGQGL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.29052734375	2	486.290882	970.567212	-0.67396	-0.00032774	-0.60744	-0.00029539	-1.2814	-0.00062313	486.29071516082763	27.583	2.1938	27.583	27.215	29.408	0					129	55	5	0	0	0	0.31037	3	1554	1495;1529;1554		74.255	21.318	1	37180000			71141	9935	49812	49894	77693;77694;77695	77695					0.08075100631526766
RVRVSGQGL	9	Unmodified	_RVRVSGQGL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.29052734375	2	486.290882	970.567212	-0.49887	-0.00024259	-0.86248	-0.00041942	-1.3614	-0.00066201	486.29060350488385	27.569	2.2712	27.556	27.101	29.372	-0.012983					129	57	5	0	0	0	0.45795	5	1479	1479;1491;1525;1537;1549		62.107	14.45	1	37106000			71142	9935	49812	49894	77696;77697;77698;77699;77700	77696					0.08075100631526766
RVRVSGQGL	9	Unmodified	_RVRVSGQGL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.29058837890625	2	486.290882	970.567212	-1.2589	-0.00061219	-0.024018	-1.1679E-05	-1.2829	-0.00062387	486.2909805729049	27.4	2.2661	27.481	27.064	29.33	0.081293					128	57	5	0	0	0	0.50848	4	1426	1426;1462;1502;1514		58.782	12.83	1	43649000			71143	9935	49812	49894	77701;77702;77703;77704	77701					0.08075100631526766
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7897338867188	2	532.790381	1063.56621	0.75748	0.00040358	-1.7739	-0.00094512	-1.0164	-0.00054154	532.7894674936734	64.006	1.2417	64.006	63.631	64.873	0					130	33	6	0	0	0	0.030064	8	7523	7490;7500;7511;7523;7535;7548;7560;7574		141.52	50.744	1	62700000			71144	3020	49813	49895	77705;77706;77707;77708;77709;77710;77711;77712	77708					0.036968414719467546
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7899169921875	2	532.790381	1063.56621	-0.60491	-0.00032229	-0.52495	-0.00027969	-1.1299	-0.00060198	532.7901270748364	64.292	1.2632	64.03	63.648	64.911	-0.2626					130	33	5	0	0	0	0.030064	7	7506	7496;7506;7517;7529;7542;7554;7566		141.52	42.891	1	66188000			71145	3020	49813	49895	77713;77714;77715;77716;77717;77718;77719	77714					0.036968414719467546
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7898559570312	2	532.790381	1063.56621	0.99	0.00052746	-2.1766	-0.0011597	-1.1866	-0.00063221	532.7892468952358	63.983	1.2106	64.029	63.688	64.899	0.045498					127	32	6	0	0	0	0.016542	7	7457	7411;7421;7433;7445;7457;7470;7482		154.12	49.372	1	67508000			71146	3020	49813	49895	77720;77721;77722;77723;77724;77725;77726	77724					0.036968414719467546
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	nc|ENSG00000110075|Q5H9R7-6|PPP6R3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7899169921875	2	532.790381	1063.56621	-0.47611	-0.00025367	0.12364	6.5872E-05	-0.35247	-0.0001878	532.7901032936312	64.277	1.1155	64.049	63.74	64.856	-0.22774					70	27	5	0	0	0	0.37611	1	7310	7310		67.494	8.7117	1	3120300			71147	3020	49813	49895	77727	77727					0.036968414719467546
RVSDSRLEA	9	Unmodified	_RVSDSRLEA_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.7755737304688	2	516.775262	1031.53597	-0.28058	-0.000145	-2.6405	-0.0013646	-2.9211	-0.0015096	516.7735957094866	24.89	0.36557	24.968	24.639	25.005	0.078344					19	7	3	0	0	0	0.37611	1	1072	1072		67.494	5.8024	1	2982900			71148	1883	49814	49896	77728	77728					0.021464828067564667
RVSELHLEV	9	Unmodified	_RVSELHLEV_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3043823242188	2	541.303655	1080.59276	-0.14343	-7.764E-05	-0.79556	-0.00043064	-0.93899	-0.00050828	541.3031407680302	47.263	1.1151	47.11	46.776	47.891	-0.15301					98	31	5	0	0	0	0.57016	1	4691	4691		54.722	3.3869	1	10586000			71149	2163	49815	49897	77729	77729					0.055685303633026706
RVSELHLEV	9	Unmodified	_RVSELHLEV_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.3038940429688	2	541.303655	1080.59276	-1.3288	-0.0007193	0.31628	0.0001712	-1.0125	-0.0005481	541.3037392453896	47.103	0.95069	47.163	46.88	47.831	0.059097					86	27	6	0	0	0	0.32064	1	4626	4626		72.879	19.943	1	12421000			71150	2163	49815	49897	77730	77730					0.055685303633026706
RVSELHLEV	9	Unmodified	_RVSELHLEV_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.303655	1080.59276	-0.049613	-2.6856E-05	-3.9599	-0.0021435	-4.0095	-0.0021704	541.8029411501478	47.388	0.25832	47.119	46.943	47.201	-0.26939	-0.010913	-0.0039715	NaN	72.879	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73680			71151	2163	49815	49897							0.055685303633026706
RVSFPRAPL	9	Unmodified	_RVSFPRAPL_					0	0	0			REV__ENST00000597836.5_1_19:17337437-17337903:+|nuORF	REV__ENST00000597836.5_1_19:17337437-17337903:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8126220703125	2	521.811451	1041.60835	-0.13268	-6.9233E-05	2.6217	0.0013681	2.4891	0.0012988	521.8128118762803	41.489	1.2789	41.512	41.111	42.39	0.023006					85	36	4	0	0	0	0.70156	1	3728	3728		45.972	0.020292	1	16691000	+		71152	35811	49816	49898	77731	77731					0.08920861671003877
RVSGQPQSV	9	Unmodified	_RVSGQPQSV_					0	0	0		ENST00000524192.6_1_20:61904210-61909556:+|nuORF;nc|ENSG00000101199|Q8N6T3-4|ARFGAP1;ENST00000519531.5_1_20:61904210-61914317:+|nuORF;nc|ENSG00000101199|Q8N6T3-5|ARFGAP1;nc|ENSG00000101199|Q8N6T3-3|ARFGAP1;ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2593994140625	2	479.259248	956.503943	-0.12952	-6.2072E-05	0.17242	8.2635E-05	0.042904	2.0562E-05	479.25924003166483	25.073	0.92959	25.073	24.474	25.403	0					50	21	4	0	0	0	0.20652	2	1153	1149;1153		88.177	11.403	1	1556100			71153	2294	49817	49899	77732;77733	77733					0.023951151236246915
RVSGQPQSV	9	Unmodified	_RVSGQPQSV_					0	0	0		ENST00000524192.6_1_20:61904210-61909556:+|nuORF;nc|ENSG00000101199|Q8N6T3-4|ARFGAP1;ENST00000519531.5_1_20:61904210-61914317:+|nuORF;nc|ENSG00000101199|Q8N6T3-5|ARFGAP1;nc|ENSG00000101199|Q8N6T3-3|ARFGAP1;ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.25970458984375	2	479.259248	956.503943	-0.76855	-0.00036833	0.84057	0.00040285	0.072025	3.4518E-05	479.2595485187797	25.135	0.74378	25.1	24.771	25.515	-0.034395					39	17	3	0	0	0	0.2101	2	1157	1144;1157		87.696	3.2516	1	1587700			71154	2294	49817	49899	77734;77735	77735					0.023951151236246915
RVSGQPQSV	9	Unmodified	_RVSGQPQSV_					0	0	0		ENST00000524192.6_1_20:61904210-61909556:+|nuORF;nc|ENSG00000101199|Q8N6T3-4|ARFGAP1;ENST00000519531.5_1_20:61904210-61914317:+|nuORF;nc|ENSG00000101199|Q8N6T3-5|ARFGAP1;nc|ENSG00000101199|Q8N6T3-3|ARFGAP1;ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.259248	956.503943	0.2585	0.00012389	-0.26025	-0.00012473	-0.0017426	-8.3516E-07	479.25904032590023	24.904	0.52187	24.983	24.731	25.253	0.078346	-0.069457	-0.00044624	NaN	88.177	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504740			71155	2294	49817	49899							0.023951151236246915
RVSLAKKV	8	Unmodified	_RVSLAKKV_					0	0	0		PYGB|p.E655K|1|0.21|ENSG00000100994|chr20:25290616-25290616|G/A|missense_variant	PYGB|p.E655K|1|0.21|ENSG00000100994|chr20:25290616-25290616|G/A|missense_variant	PYGB|p.E655K|1|0.21|ENSG00000100994|chr20:25290616-25290616|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.24761962890625	2	450.803094	899.591636	-0.019066	-8.5948E-06	-3.3225	-0.0014978	-3.3415	-0.0015064	450.8015170074193	39.661	0.23204	39.431	39.275	39.507	-0.23021					9	5	2	0	0	0	0.027866	1	3361	3361		49.442	10.42	1	106490			71156	19014	49818	49900	77736	77736					0.1378236078504642
RVSQGSKGPAE	11	Unmodified	_RVSQGSKGPAE_					0	0	0		GANAB|p.D192G|1|0.07|ENSG00000089597|chr11:62633500-62633500|T/C|missense_variant	GANAB|p.D192G|1|0.07|ENSG00000089597|chr11:62633500-62633500|T/C|missense_variant	GANAB|p.D192G|1|0.07|ENSG00000089597|chr11:62633500-62633500|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.2935180664062	2	558.293819	1114.57309	-0.71636	-0.00039994	0.0044428	2.4804E-06	-0.71192	-0.00039746	558.2937791582706	26.448	0.92717	26.425	26.164	27.091	-0.023088					64	22	5	0	0	0	0.58492	1	1340	1340		70.816	2.0294	1	3310300			71157	17670	49819	49901	77737	77737					0.020381543525445522
RVSRGGSVL	9	Unmodified	_RVSRGGSVL_					0	0	0			REV__nc|ENSG00000166508|P33993-2|MCM7	REV__nc|ENSG00000166508|P33993-2|MCM7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.77734375	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.77768	1	9692	9692		40.778	3.6191	1	1283800	+		71158	26029	49820	49902	77738	77738					0.07307411740191583
RVSRSVLGG	9	Unmodified	_RVSRSVLGG_					0	0	0		ENST00000354179.8_2_5:176723055-176723301:+|nuORF	ENST00000354179.8_2_5:176723055-176723301:+|nuORF	ENST00000354179.8_2_5:176723055-176723301:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7776794433594	2	465.777608	929.540663	-0.52618	-0.00024508	0.34984	0.00016295	-0.17634	-8.2136E-05	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.87448	1	9712	9712		34.173	1.3601	1	1029300			71159	12619	49821	49903	77739	77739					0.07307411740191583
RVSSRPPPPVC	11	Unmodified	_RVSSRPPPPVC_					0	0	0			REV__ENST00000287218.8_1_6:37787351-37897773:+|nuORF	REV__ENST00000287218.8_1_6:37787351-37897773:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.8565063476562	2	597.824232	1193.63391	-0.4687	-0.0002802	-0.71221	-0.00042578	-1.1809	-0.00070598	597.8246841630893	93.334	0.21921	93.212	93.015	93.234	-0.12215					5	4	2	0	0	0	0.024765	1	11493	11493		41.427	7.2541	1	21833	+		71160	29923	49822	49904	77740	77740					0.04483968131103211
RVSVRVCL	8	Unmodified	_RVSVRVCL_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2634582519531	2	466.278929	930.543305	-1.0746	-0.00050104	-0.44003	-0.00020518	-1.5146	-0.00070622	466.2783944240218	37.986	0.51904	37.768	37.5	38.019	-0.21849					30	14	3	0	0	0	0.027866	1	3052	3052		51.335	0	1	244420			71161	4716	49823	49905	77741	77741					0.07525543873487095
RVTDAVTLVSI	11	Unmodified	_RVTDAVTLVSI_					0	0	0			REV__ENSG00000158966|ENST00000651257|CACHD1	REV__ENSG00000158966|ENST00000651257|CACHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.3428344726562	2	587.34552	1172.67649	-0.81423	-0.00047823	-4.3071	-0.0025297	-5.1213	-0.003008	587.342874849692	88.768	1.0897	88.637	88.277	89.367	-0.13135					61	25	4	0	0	0	0.95664	1	10855	10855		46.457	1.4346	1	715880	+		71162	25227	49824	49906	77742	77742					0.09705641740333704
RVTDEILHL	9	Unmodified	_RVTDEILHL_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;PAPOLG|p.D348*|1|0.28|ENSG00000115421|chr2:60782699-60782700|AG/-|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.310791015625	2	548.31148	1094.60841	-0.63834	-0.00035001	0.11711	6.4214E-05	-0.52123	-0.0002858	548.3116487266597	56.189	1.2511	56.189	55.822	57.073	0					119	35	6	0	0	0	0.043667	6	6247	6225;6235;6247;6259;6272;6285		131.03	31.656	1	28616000			71163	10604;1922;3445	49825	49907	77743;77744;77745;77746;77747;77748	77745					0.06488816880346349
RVTDEILHL	9	Unmodified	_RVTDEILHL_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;PAPOLG|p.D348*|1|0.28|ENSG00000115421|chr2:60782699-60782700|AG/-|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.311279296875	2	548.31148	1094.60841	-0.96736	-0.00053042	0.47188	0.00025874	-0.49548	-0.00027168	548.3118526535122	56.279	1.3157	56.123	55.814	57.13	-0.15601					119	36	5	0	0	0	0.15366	5	6235	6214;6223;6235;6247;6260		98.629	13.51	1	26631000			71164	10604;1922;3445	49825	49907	77749;77750;77751;77752;77753	77751					0.06488816880346349
RVTDEILHL	9	Unmodified	_RVTDEILHL_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;PAPOLG|p.D348*|1|0.28|ENSG00000115421|chr2:60782699-60782700|AG/-|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000090060|ENST00000216277|PAPOLA;ENSG00000115421|ENST00000238714|PAPOLG;ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.3112182617188	2	548.31148	1094.60841	-1.2947	-0.00070992	0.68342	0.00037473	-0.61132	-0.00033519	548.3119799425222	55.988	1.3853	56.085	55.744	57.13	0.097893					116	38	5	0	0	0	0.082191	3	6155	6119;6155;6167		116.9	18.91	1	29822000			71165	10604;1922;3445	49825	49907	77754;77755;77756	77755					0.06488816880346349
RVTEGVRP	8	Unmodified	_RVTEGVRP_					0	0	0		ENST00000572621.5_2_17:1587904-1588036:-|nuORF	ENST00000572621.5_2_17:1587904-1588036:-|nuORF	ENST00000572621.5_2_17:1587904-1588036:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.26385498046875	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0239	1	10215	10215		33.516	1.5607	1	3048400			71166	17061	49826	49908	77757	77757					0.05435722848858404
RVTEILDYW	9	Unmodified	_RVTEILDYW_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8114013671875	2	597.811313	1193.60807	-0.37188	-0.00022231	-0.025935	-1.5504E-05	-0.39781	-0.00023782	597.8111892446683	73.589	0.59863	73.399	73.085	73.683	-0.19026					42	14	4	0	0	0	0.37611	1	8653	8653		67.494	7.3754	1	1209200			71167	2461	49827	49909	77758	77758					0.0190139716048634
RVTERPEP	8	Unmodified	_RVTERPEP_					0	0	0		ENST00000338560.11_1_17:16318960-16319095:+|nuORF	ENST00000338560.11_1_17:16318960-16319095:+|nuORF	ENST00000338560.11_1_17:16318960-16319095:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.7708740234375	2	492.267073	982.519593	1.3774	0.00067803	-0.9994	-0.00049197	0.37796	0.00018606	492.26625660966	37.134	1.1452	37.134	36.724	37.869	0					75	30	4	0	0	0	0.6248	1	2983	2983		73.975	2.679	1	12836000			71168	12443	49828	49910	77759	77759					0.027634016406636874
RVTFLVVAI	9	Unmodified	_RVTFLVVAI_					0	0	0		nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.3260803222656	2	509.326402	1016.63825	-0.51257	-0.00026106	0.059133	3.0118E-05	-0.45344	-0.00023095	509.3263913018525	77.85	0.73907	77.865	77.536	78.275	0.015907					56	17	4	0	0	0	0.4752	1	9556	9556		60.972	4.2509	1	6039200			71169	18819	49829	49911	77760	77760					0.13059800616315442
RVTFLVVAI	9	Unmodified	_RVTFLVVAI_					0	0	0		nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.32659912109375	2	509.326402	1016.63825	-0.048329	-2.4615E-05	-0.21789	-0.00011098	-0.26622	-0.00013559	509.32621852016973	77.811	0.80763	77.549	77.226	78.034	-0.26202					57	18	4	0	0	0	0.75397	1	9249	9249		42.396	0	1	5836100			71170	18819	49829	49911	77761	77761					0.13059800616315442
RVTFLVVAI	9	Unmodified	_RVTFLVVAI_					0	0	0		nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.32598876953125	2	509.326402	1016.63825	-0.31861	-0.00016228	-0.060671	-3.0901E-05	-0.37928	-0.00019318	509.3262910924943	77.685	0.72538	77.523	77.225	77.951	-0.16196					54	16	4	0	0	0	0.4752	1	9222	9222		60.972	9.6365	1	4794900			71171	18819	49829	49911	77762	77762					0.13059800616315442
RVTGGIFSV	9	Unmodified	_RVTGGIFSV_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.268798828125	2	468.269084	934.523616	-0.36863	-0.00017262	0.28242	0.00013225	-0.086214	-4.0371E-05	468.26911229195633	56.644	1.0306	56.48	56.129	57.16	-0.16431					75	28	5	0	0	0	0.086035	3	6281	6281;6290;6303		115.49	36.043	1	4689900			71172	6181	49830	49912	77763;77764;77765	77763					0.05373491134378128
RVTGGIFSV	9	Unmodified	_RVTGGIFSV_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.2689208984375	2	468.269084	934.523616	0.17498	8.1936E-05	-0.21707	-0.00010165	-0.042091	-1.971E-05	468.2688869428645	56.318	1.0968	56.416	56.033	57.13	0.097893					82	30	4	0	0	0	0.16638	2	6186	6186;6196		95.815	35.521	1	4492700			71173	6181	49830	49912	77766;77767	77766					0.05373491134378128
RVTGLLVAL	9	Unmodified	_RVTGLLVAL_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.31036376953125	2	471.310752	940.606951	2.2024	0.001038	-2.1943	-0.0010342	0.0081384	3.8357E-06	471.3096122772709	20.074	1.0714	20.143	19.54	20.612	0.068876					57	21	4	0	0	0	0.6504	1	476	476		49.442	13.823	1	924460			71174	7335	49831	49913	77768	77768					0.13427227582246815
RVTIMPKDI	9	Unmodified	_RVTIMPKDI_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.8101196289062	2	536.812802	1071.61105	-1.6497	-0.00088557	-2.4653	-0.0013234	-4.115	-0.002209	536.811315926085	29.183	0.74205	29.183	28.99	29.732	0					46	18	4	0	0	0	0.76818	1	1761	1761		41.427	0.21825	1	2348400			71175	7790;13704	49832	49914	77769	77769					0.07810949013628488
RVTNQVTLYK	10	Unmodified	_RVTNQVTLYK_					0	0	0			REV__nc|ENSG00000123130|Q9Y305-3|ACOT9	REV__nc|ENSG00000123130|Q9Y305-3|ACOT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.2637023925781	3	407.903183	1220.68772	0.68677	0.00028014	-2.3736	-0.00096819	-1.6868	-0.00068805	407.9023596563748	21.744	1.1485	21.567	20.822	21.971	-0.17721					25	23	2	0	0	0	0.03519	1	659	659		17.833	6.3785	1	37268	+		71176	22679	49833	49915	77770	77770					0.08620463834472503
RVTPTRTEI	9	Unmodified	_RVTPTRTEI_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.8135986328125	2	536.809105	1071.60366	-1.0197	-0.0005474	3.2631	0.0017516	2.2433	0.0012043	536.8107252710977	29.159	0.91227	29.163	28.839	29.751	0.0031376					54	22	4	0	0	0	0.70156	1	1756	1756		45.972	1.5951	1	2255200			71177	6078;13756	49834	49916	77771	77771					0.07071932737562747
RVTQLQFKV	9	Unmodified	_RVTQLQFKV_					0	0	0		ENSG00000150977|ENST00000280571|RILPL2	ENSG00000150977|ENST00000280571|RILPL2	ENSG00000150977|ENST00000280571|RILPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.321533203125	2	559.837665	1117.66078	-0.15382	-8.6114E-05	3.8823	0.0021734	3.7284	0.0020873	560.3406938875825	67.967	0.15756	67.679	67.552	67.71	-0.28835					6	3	2	0	0	0	0.024438	1	8087	8087		44.377	7.2181	1	82718			71178	6163	49835	49917	77772	77772					0.10665400013931503
RVTSSALLGLD	11	Unmodified	_RVTSSALLGLD_					0	0	0			REV__MLT1B_dup3873|chr3:196322226-196322526:-|2.403722863292409|0.2716452758455918|3.15|516.0|4|2|sense	REV__MLT1B_dup3873|chr3:196322226-196322526:-|2.403722863292409|0.2716452758455918|3.15|516.0|4|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.3224487304688	2	566.322045	1130.62954	0.070965	4.0189E-05	0.26956	0.00015266	0.34052	0.00019285	566.322303110478	105.93	0.62749	105.81	105.51	106.13	-0.12381					61	22	4	0	0	0	1.0238	1	13199	13199		31.53	2.3598	1	622550	+		71179	36383	49836	49918	77773	77773					0.06944782189179932
RVTTIARN	8	Unmodified	_RVTTIARN_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23A|p.R493H|1|0.16|ENSG00000100934|chr14:39061792-39061792|C/T|missense_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7775573730469	2	465.777608	929.540663	-0.64033	-0.00029825	0.5734	0.00026708	-0.066929	-3.1174E-05	465.7778115254298	80.676	2.2634	80.676	79.077	81.341	0					120	54	3	0	0	0	0.845	1	10018	10018		55.504	7.5886	1	1014200			71180	2261;2309	49837	49919	77774	77774					0.07307411740180214
RVTTIARNW	9	Unmodified	_RVTTIARNW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23A|p.R493H|1|0.16|ENSG00000100934|chr14:39061792-39061792|C/T|missense_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.8169555664062	2	558.817264	1115.61998	-0.40761	-0.00022778	-0.13161	-7.3546E-05	-0.53922	-0.00030133	558.8171741997983	37.884	0.61893	37.704	37.483	38.102	-0.17929					39	17	3	0	0	0	0.30449	1	3086	3086		75.043	34.265	1	1634500			71181	2261;2309	49838	49920	77775	77775					0.06679058694317064
RVTTIARNW	9	Unmodified	_RVTTIARNW_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;SEC23A|p.R493H|1|0.16|ENSG00000100934|chr14:39061792-39061792|C/T|missense_variant;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	558.817264	1115.61998	-0.91537	-0.00051153	0.24776	0.00013845	-0.66761	-0.00037307	558.8174404126007	37.926	0.63305	37.705	37.388	38.021	-0.22149	-0.010588	-4.6084E-05	NaN	75.043	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1677800			71182	2261;2309	49838	49920							0.06679058694317064
RVTVFDLK	8	Unmodified	_RVTVFDLK_					0	0	0		ENSG00000241945|ENST00000291576|PWP2;PWP2-TRAPPC10|1|fusion	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7681579589844	2	489.292559	976.570566	0.17964	8.7896E-05	-0.9905	-0.00048465	-0.81086	-0.00039675	489.2920175541394	37.133	1.074	37.07	36.828	37.902	-0.063385					64	29	3	0	0	0	0.027866	1	3039	3039		24.203	0	1	3946200			71183	10788	49839	49921	77776	77776					0.08134350685509162
RVTVPDELPNE	11	Unmodified	_RVTVPDELPNE_					0	0	0			REV__ENST00000586001.1_1_17:40629662-40630664:+|nuORF	REV__ENST00000586001.1_1_17:40629662-40630664:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.5546875	3	423.55422	1267.64083	2.2478	0.00095206	-1.3577	-0.00057506	0.8901	0.00037701	423.55369227421005	24.007	1.1839	23.826	23.539	24.723	-0.18089					57	26	4	0	0	0	0.6922	2	970	970;981		64.224	6.3384	1	4794700	+		71184	35588	49840	49922	77777;77778	77777					0.017715594926585254
RVVAAPQR	8	Unmodified	_RVVAAPQR_					0	0	0		ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	ENSG00000168924|ENST00000302787|LETM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7749328613281	2	448.774868	895.535184	-0.44844	-0.00020125	0.74446	0.0003341	0.29602	0.00013285	448.77505496027175	23.179	0.97516	23.255	23.026	24.001	0.076241					45	22	3	0	0	0	0.81662	1	840	840		57.811	7.7867	1	870350			71185	7883	49841	49923	77779	77779					0.08323732948372253
RVVDFDETW	9	Unmodified	_RVVDFDETW_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.777099609375	2	583.77747	1165.54039	-0.18612	-0.00010865	0.12778	7.4593E-05	-0.058342	-3.4059E-05	583.7773960187782	63.222	0.71324	63.001	62.734	63.447	-0.22097					48	17	4	0	0	0	0.020687	2	7131	7118;7131		148.99	85.453	1	2320800			71186	2878	49842	49924	77780;77781	77781					-0.03576052770335991
RVVDFDETW	9	Unmodified	_RVVDFDETW_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.7767333984375	2	583.77747	1165.54039	-1.0266	-0.00059931	0.70833	0.00041351	-0.31827	-0.0001858	583.7777342351305	63.17	0.72209	62.987	62.704	63.426	-0.18386					49	17	4	0	0	0	0.013293	3	7130	7118;7130;7142		176.09	113.98	1	2230800			71187	2878	49842	49924	77782;77783;77784	77783					-0.03576052770335991
RVVDFDETW	9	Unmodified	_RVVDFDETW_					0	0	0		nc|ENSG00000108094|Q13617-2|CUL2;ENSG00000108094|ENST00000374749|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	nc|ENSG00000108094|Q13617-2|CUL2	nc|ENSG00000108094|Q13617-2|CUL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.7775268554688	2	583.77747	1165.54039	-0.29873	-0.00017439	0.24312	0.00014193	-0.055606	-3.2461E-05	583.7775107757233	63.319	0.70279	63.06	62.792	63.495	-0.25824					53	17	4	0	0	0	0.016758	2	7133	7121;7133		153.04	92.918	1	2682000			71188	2878	49842	49924	77785;77786	77786					-0.03576052770335991
RVVDQPLKL	9	Unmodified	_RVVDQPLKL_					0	0	0		ENSG00000134371|ENST00000367435|CDC73;ENST00000477868.1_1_1:193202201-193218860:+|nuORF	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.3318481445312	2	534.332216	1066.64988	-1.5436	-0.0008248	0.71852	0.00038393	-0.8251	-0.00044088	534.3325171999976	44.201	0.98843	44.201	43.91	44.898	0					68	28	4	0	0	0	0.1764	2	4216	4205;4216		93.598	10.847	1	7590700			71189	4791	49843	49925	77787;77788	77788					0.11921997639660731
RVVDQPLKL	9	Unmodified	_RVVDQPLKL_					0	0	0		ENSG00000134371|ENST00000367435|CDC73;ENST00000477868.1_1_1:193202201-193218860:+|nuORF	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.3313598632812	2	534.332216	1066.64988	-1.5957	-0.00085266	0.7566	0.00040428	-0.83914	-0.00044838	534.3325393157432	44.417	1.0204	44.272	43.958	44.978	-0.14471					76	29	4	0	0	0	0.22379	1	4220	4220		85.862	12.983	1	6870200			71190	4791	49843	49925	77789	77789					0.11921997639660731
RVVDQPLKL	9	Unmodified	_RVVDQPLKL_					0	0	0		ENSG00000134371|ENST00000367435|CDC73;ENST00000477868.1_1_1:193202201-193218860:+|nuORF	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.3313598632812	2	534.332216	1066.64988	-0.82039	-0.00043836	0.16124	8.6156E-05	-0.65915	-0.0003522	534.3322145008419	44.262	0.96376	44.299	43.959	44.923	0.0369					67	27	4	0	0	0	0.22379	2	4165	4153;4165		85.862	7.598	1	6800200			71191	4791	49843	49925	77790;77791	77791					0.11921997639660731
RVVELQQTL	9	Unmodified	_RVVELQQTL_					0	0	0		nc|ENSG00000056558|Q13077-2|TRAF1;ENSG00000056558|ENST00000373887|TRAF1	nc|ENSG00000056558|Q13077-2|TRAF1	nc|ENSG00000056558|Q13077-2|TRAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.3184204101562	2	543.319306	1084.62406	-1.0141	-0.00055096	0.91446	0.00049684	-0.099611	-5.412E-05	543.3196368088104	50.042	0.94804	50.042	49.694	50.642	0					85	27	5	0	0	0	0.065	1	5205	5205		123.21	24.626	1	5491800			71192	1198	49844	49926	77792	77792					0.08513103397376653
RVVELQQTL	9	Unmodified	_RVVELQQTL_					0	0	0		nc|ENSG00000056558|Q13077-2|TRAF1;ENSG00000056558|ENST00000373887|TRAF1	nc|ENSG00000056558|Q13077-2|TRAF1	nc|ENSG00000056558|Q13077-2|TRAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.318603515625	2	543.319306	1084.62406	-0.627	-0.00034066	0.48533	0.00026369	-0.14167	-7.6971E-05	543.3194523448972	50.276	1.1164	50.124	49.708	50.824	-0.1512					78	32	4	0	0	0	0.09527	1	5212	5212		112.11	15.917	1	5692100			71193	1198	49844	49926	77793	77793					0.08513103397376653
RVVELQQTL	9	Unmodified	_RVVELQQTL_					0	0	0		nc|ENSG00000056558|Q13077-2|TRAF1;ENSG00000056558|ENST00000373887|TRAF1	nc|ENSG00000056558|Q13077-2|TRAF1	nc|ENSG00000056558|Q13077-2|TRAF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.319306	1084.62406	-0.87244	-0.00047402	0.63477	0.00034488	-0.23767	-0.00012913	543.319604472385	49.973	0.80523	50.054	49.737	50.543	0.08099	-0.019469	-1.5721E-06	NaN	123.21	76	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6437400			71194	1198	49844	49926							0.08513103397376653
RVVGPGAKPA	10	Unmodified	_RVVGPGAKPA_					0	0	0			REV__ENSG00000101367|ENST00000375571|MAPRE1	REV__ENSG00000101367|ENST00000375571|MAPRE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2773132324219	2	476.290351	950.566149	2.315	0.0011026	-2.3485	-0.0011186	-0.033542	-1.5976E-05	476.289082723405	18.94	0.69294	18.706	18.483	19.176	-0.23345					25	13	3	0	0	0	0.03519	1	378	378		27.882	4.8398	1	404600	+		71195	21228	49845	49927	77794	77794					0.08888886262604956
RVVIADHNL	9	Unmodified	_RVVIADHNL_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7985229492188	2	518.79854	1035.58253	-0.91098	-0.00047262	0.32672	0.0001695	-0.58427	-0.00030312	518.7986309815509	30.612	1.1942	30.686	30.378	31.572	0.074314					52	28	3	0	0	0	0.29158	1	1939	1939		76.774	10.345	1	4010300	+		71196	20389	49846	49928	77795	77795					0.06615967428706426
RVVKGKVDS	9	Unmodified	_RVVKGKVDS_					0	0	0		ENST00000372564.7_1_9:131770089-131770917:-|nuORF	ENST00000372564.7_1_9:131770089-131770917:-|nuORF	ENST00000372564.7_1_9:131770089-131770917:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3009948730469	2	494.300916	986.587279	0.096981	4.7938E-05	-0.41903	-0.00020712	-0.32204	-0.00015919	494.30066874663805	96.234	2.9932	96.097	95.508	98.501	-0.13671					244	69	7	0	0	0	0.83071	1	12017	12017		37.159	12.956	1	34796000			71197	13045	49847	49929	77796	77796					0.09344851571484014
RVVKGKVDS	9	Unmodified	_RVVKGKVDS_					0	0	0		ENST00000372564.7_1_9:131770089-131770917:-|nuORF	ENST00000372564.7_1_9:131770089-131770917:-|nuORF	ENST00000372564.7_1_9:131770089-131770917:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.3006591796875	2	494.300916	986.587279	0.83498	0.00041273	-1.1174	-0.00055231	-0.28239	-0.00013958	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	0.92825	1	11973	11973		30.504	1.3541	1	37582000			71198	13045	49847	49929	77797	77797					0.09344851571484014
RVVLSFLD	8	Unmodified	_RVVLSFLD_					0	0	0			REV__ENST00000554163.5_1_14:54948056-54950476:-|nuORF	REV__ENST00000554163.5_1_14:54948056-54950476:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7859802246094	2	474.779285	947.544017	0.67374	0.00031988	3.6691	0.001742	4.3428	0.0020619	474.78085128942394	93.002	0.34027	93.002	92.794	93.135	0					10	7	2	0	0	0	0.027866	1	11790	11790		44.117	11.304	1	70069	+		71199	34984	49848	49930	77798	77798					0.06814661794192034
RVVPVLLL	8	Unmodified	_RVVPVLLL_					0	0	0			REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF	REV__ENST00000421092.1_1_20:58517212-58517281:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.2825927734375	2	454.818213	907.621873	0.29614	0.00013469	-0.070098	-3.1882E-05	0.22604	0.00010281	454.818041704805	84.236	0.79739	84.236	83.954	84.751	0					43	18	3	0	0	0	0.027866	1	10509	10509		20.482	6.7065	1	579480	+		71200	32175	49849	49931	77799	77799					0.16436719450234705
RVVQQYILN	9	Unmodified	_RVVQQYILN_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.8272705078125	2	566.827298	1131.64004	-0.89125	-0.00050518	0.45325	0.00025692	-0.43799	-0.00024827	566.8274553648066	52.89	2.2809	52.986	51.723	54.004	0.095669					149	61	4	0	0	0	0.59099	1	5618	5618		53.351	8.3292	1	3234400	+		71201	23757	49850	49932	77800	77800					0.0794880963428568
RVVVSARSR	9	Unmodified	_RVVVSARSR_					0	0	0		ENST00000568503.1_1_16:67208072-67208471:+|nuORF	ENST00000568503.1_1_16:67208072-67208471:+|nuORF	ENST00000568503.1_1_16:67208072-67208471:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3178100585938	2	515.317432	1028.62031	4.2489	0.0021895	-2.9209	-0.0015052	1.3279	0.0006843	515.315862165047	17.96	0.61351	18.021	17.786	18.399	0.06036					33	13	5	0	0	0	0.80003	1	198	198		39.253	2.0937	1	176020			71202	16983	49851	49933	77801	77801					0.10714478414183759
RVWAQIVK	8	Unmodified	_RVWAQIVK_					0	0	0			REV__ENST00000568910.1_1_16:71319838-71323083:-|nuORF	REV__ENST00000568910.1_1_16:71319838-71323083:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.30523681640625	2	500.308544	998.602535	-0.54611	-0.00027322	-4.3099	-0.0021563	-4.856	-0.0024295	500.3063434571611	33.051	0.65587	33.051	32.865	33.521	0					34	17	2	0	0	0	0.93274	2	2343	2343;2366		47.916	7.343	1	3629600	+		71203	35357	49852	49934	77802;77803	77802					0.10317763159321203
RVWAQIVK	8	Unmodified	_RVWAQIVK_					0	0	0			REV__ENST00000568910.1_1_16:71319838-71323083:-|nuORF	REV__ENST00000568910.1_1_16:71319838-71323083:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.30487060546875	2	500.308544	998.602535	-0.72522	-0.00036284	-4.1484	-0.0020755	-4.8736	-0.0024383	500.3064276370605	32.939	0.83373	32.946	32.738	33.572	0.0066261					42	22	3	0	0	0	0.93274	1	2309	2309		47.916	3.7988	1	3294800	+		71204	35357	49852	49934	77804	77804					0.10317763159321203
RVWHKRHF	8	Unmodified	_RVWHKRHF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.3035278320312	2	583.328134	1164.64171	-1.4164	-0.00082621	-3.684	-0.002149	-5.1004	-0.0029752	583.3276118921771	64.839	0.39796	64.636	64.42	64.818	-0.20254					18	9	3	0	0	0	0.027866	1	7414	7414		26.796	8.534	1	164340	+		71205	31474	49853	49935	77805	77805					0.06597908233561611
RVWRLLKRVG	10	Unmodified	_RVWRLLKRVG_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	641.8826293945312	2	641.914573	1281.81459	1.4206	0.00091189	2.1368	0.0013717	3.5574	0.0022836	642.4174795338262	95.677	0.1284	95.681	95.601	95.729	0.0033722					4	2	2	0	0	0	0.03519	1	12160	12160		14.137	0	1	28780	+		71206	23499	49854	49936	77806	77806					0.18495854570119263
RVYKYCSKLSE	11	Unmodified	_RVYKYCSKLSE_					0	0	0		EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant;ENSG00000100393|ENST00000263253|EP300	EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	EP300|p.Q2087Lfs*45|1|0.08|ENSG00000100393|chr22:41177969-41177975|GCAGCGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.22528076171875	3	459.239467	1374.69657	-0.728	-0.00033433	1.5043	0.00069084	0.77632	0.00035652	459.239347718456	26.498	0.92895	26.335	25.951	26.88	-0.16331					58	24	3	0	0	0	0.024734	1	1300	1300		21.78	0	1	612200			71207	2194	49855	49937	77807	77807					0.02421069408637777
RVYRRKRSKFL	11	Unmodified	_RVYRRKRSKFL_					0	0	0		ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	ENSG00000119403|ENST00000373896|PHF19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2973937988281	3	503.647671	1507.92118	0.20532	0.00010341	3.9314	0.0019801	4.1368	0.0020835	503.6495119575513	21.077	0.88113	20.881	20.533	21.415	-0.19577					23	17	2	0	0	0	0.02486	1	681	681		12.957	0	1	21872			71208	3735	49856	49938	77808	77808					0.18753985064631706
RVYYKQCR	8	Unmodified	_RVYYKQCR_					0	0	0		nc|ENSG00000183317|Q5JZY3-2|EPHA10;nc|ENSG00000183317|Q5JZY3-3|EPHA10;ENSG00000183317|ENST00000373048|EPHA10	nc|ENSG00000183317|Q5JZY3-2|EPHA10	nc|ENSG00000183317|Q5JZY3-2|EPHA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.2933349609375	2	558.292568	1114.57058	-0.1204	-6.7216E-05	1.6414	0.00091637	1.521	0.00084915	558.2933914959123	26.272	1.0097	26.354	26.091	27.1	0.081291					76	24	5	0	0	0	0.78609	1	1292	1292		60.294	2.064	1	2806100			71209	9216	49857	49939	77809	77809					0.017880274138633467
RWAAPPIEITE	11	Unmodified	_RWAAPPIEITE_					0	0	0		ENST00000340800.6_1_X:108928660-108976514:-|nuORF;ENST00000469796.6_1_X:108926864-108976514:-|nuORF	ENST00000340800.6_1_X:108928660-108976514:-|nuORF	ENST00000340800.6_1_X:108928660-108976514:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8422241210938	2	641.843145	1281.67174	0.1428	9.1657E-05	-3.8035	-0.0024413	-3.6607	-0.0023496	641.840547542786	110.24	0.39304	110.09	109.91	110.3	-0.14889					37	16	3	0	0	0	1.0292	1	13507	13507		30.318	0	1	400060			71210	12477	49858	49940	77810	77810					0.04216757597555443
RWAELLPLLQ	10	Unmodified	_RWAELLPLLQ_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000533592.2_1_11:501898-502162:-|nuORF;ENST00000528713.5_1_11:500482-502162:-|nuORF;ENST00000531223.1_1_11:499763-502162:-|nuORF;ENST00000525522.5_1_11:499827-504867:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8688354492188	2	619.866423	1237.71829	0.45812	0.00028397	4.1671	0.002583	4.6252	0.002867	619.8688770335856	104.94	0.57281	104.78	104.47	105.04	-0.16485					46	20	3	0	0	0	1.1217	1	13045	13045		21.96	1.013	1	167060			71211	968	49859	49941	77811	77811					0.1089424221952413
RWAMVRLLVLN	11	Unmodified	_RWAMVRLLVLN_					0	0	0			REV__ENSG00000158428|ENST00000289388|CATIP	REV__ENSG00000158428|ENST00000289388|CATIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.6083984375	3	457.607825	1369.80165	0.77892	0.00035644	-0.36968	-0.00016917	0.40924	0.00018727	457.6077655587918	98.898	1.8258	98.761	97.927	99.752	-0.13625					121	44	3	0	0	0	1.0834	1	12203	12203		15.921	0	1	383140	+		71212	25194	49860	49942	77812	77812					0.13153655395740316
RWARKAVVLL	10	Unmodified	_RWARKAVVLL_					0	0	0		ENSG00000117899|ENST00000261758|MESD;nc|ENSG00000117899|Q14696-2|MESD	ENSG00000117899|ENST00000261758|MESD	ENSG00000117899|ENST00000261758|MESD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.3856811523438	2	606.3904	1210.76625	-0.2035	-0.0001234	-4.2942	-0.002604	-4.4977	-0.0027274	606.3875171274191	107.31	0.4583	107.31	106.98	107.44	-0.003479					32	14	3	0	0	0	1.1237	1	13745	13745		23.042	3.0457	1	193720			71213	3663	49861	49943	77813	77813					0.16929360930225812
RWCHSMGAS	9	Unmodified	_RWCHSMGAS_					0	0	0			REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.8272094726562	2	517.718378	1033.4222	-0.39019	-0.00020201	-0.94363	-0.00048853	-1.3338	-0.00069054	517.7178853285063	34.952	0.35104	34.766	34.56	34.911	-0.18675					11	8	2	0	0	0	0.024477	1	2604	2604		35.618	13.658	1	79156	+		71214	36579	49862	49944	77814	77814					-0.09317026831490693
RWEPTGSH	8	Unmodified	_RWEPTGSH_					0	0	0		ENST00000395914.5_1_20:54961549-54967234:-|nuORF	ENST00000395914.5_1_20:54961549-54967234:-|nuORF	ENST00000395914.5_1_20:54961549-54967234:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.283447265625	2	485.230491	968.446428	-0.47107	-0.00022858	-3.0701	-0.0014897	-3.5411	-0.0017183	485.22876237988226	21.632	0.32681	21.542	21.403	21.73	-0.090094					9	6	2	0	0	0	0.027866	1	657	657		31.955	11.473	1	10429			71215	13536	49863	49945	77815	77815					-0.03905727081951227
RWERLLLRPE	10	Unmodified	_RWERLLLRPE_					0	0	0		PAPPA2|p.R269W|1|0.49|ENSG00000116183|chr1:176557127-176557127|C/T|missense_variant	PAPPA2|p.R269W|1|0.49|ENSG00000116183|chr1:176557127-176557127|C/T|missense_variant	PAPPA2|p.R269W|1|0.49|ENSG00000116183|chr1:176557127-176557127|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7550354003906	3	456.601727	1366.78335	-0.79487	-0.00036294	-2.1618	-0.00098708	-2.9567	-0.00135	456.60063645623404	22.315	0.52869	22.389	22.125	22.653	0.073954					18	10	2	0	0	0	0.03519	1	755	755		36.318	0	1	43829			71216	18939	49864	49946	77816	77816					0.11463236745362337
RWERWRWPWCA	11	Unmodified	_RWERWRWPWCA_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.847412109375	3	544.598211	1630.7728	-1.3388	-0.00072912	0.23341	0.00012711	-1.1054	-0.00060201	544.5981269026358	20.983	0.89132	20.77	20.227	21.118	-0.2128					32	17	3	0	0	0	0.024851	1	598	598		19.263	15.644	1	178510	+		71217	35664	49865	49947	77817	77817					-0.017350691807223484
RWERWRWPWCA	11	Unmodified	_RWERWRWPWCA_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	544.598211	1630.7728	-1.4834	-0.00080788	0.6195	0.00033738	-0.86393	-0.0004705	544.5981744000342	20.353	1.0193	20.353	19.782	20.801	0	-0.22512	0.0019786	NaN	19.263	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88875	+		71218	35664	49865	49947							-0.017350691807223484
RWERWRWPWCA	11	Unmodified	_RWERWRWPWCA_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	544.598211	1630.7728	-1.1129	-0.00060609	0.19956	0.00010868	-0.91335	-0.00049741	545.2676596299348	20.645	0.81738	20.541	20.129	20.946	-0.10477	-0.038002	0.0012924	NaN	19.263	30	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59938	+		71219	35664	49865	49947							-0.017350691807223484
RWERWRWPWCA	11	Unmodified	_RWERWRWPWCA_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	544.598211	1630.7728	0.30241	0.00016469	-1.09	-0.00059359	-0.78755	-0.0004289	544.5972909195107	20.529	0.83767	20.598	20.119	20.956	0.068901	0.019604	-0.00081436	NaN	19.263	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55735	+		71220	35664	49865	49947							-0.017350691807223484
RWFKRWKWKGM	11	Unmodified	_RWFKRWKWKGM_					0	0	0			REV__ENST00000315183.11_2_16:24801717-24801792:+|nuORF	REV__ENST00000315183.11_2_16:24801717-24801792:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.59228515625	4	402.973771	1607.86598	0.035754	1.4408E-05	-1.0851	-0.00043728	-1.0494	-0.00042287	402.9731184212348	37.932	0.57974	37.71	37.348	37.928	-0.22149					31	15	4	0	0	0	0.024888	1	3112	3112		6.001	2.5923	1	181050	+		71221	30256	49866	49948	77818	77818					0.08635855272495974
RWFKRWKWKGM	11	Unmodified	_RWFKRWKWKGM_					0	0	0			REV__ENST00000315183.11_2_16:24801717-24801792:+|nuORF	REV__ENST00000315183.11_2_16:24801717-24801792:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5926208496094	4	402.973771	1607.86598	-1.2135	-0.00048902	0.26289	0.00010594	-0.95064	-0.00038308	402.9738137880344	37.95	0.54188	37.731	37.384	37.926	-0.21848					26	14	3	0	0	0	0.024895	1	3085	3085		6.6596	5.4277	1	233430	+		71222	30256	49866	49948	77819	77819					0.08635855272495974
RWFLASSRVR	10	Unmodified	_RWFLASSRVR_					0	0	0			REV__ENST00000221859.8_1_19:36605839-36605938:-|nuORF	REV__ENST00000221859.8_1_19:36605839-36605938:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	639.3626708984375	2	639.364913	1276.71527	1.7487	0.0011181	-4.4108	-0.0028201	-2.6621	-0.0017021	639.3619295594426	109.95	0.62169	109.95	109.73	110.35	0					69	21	5	0	0	0	1.1265	1	13994	13994		24.519	4.5224	1	2552900	+		71223	29349	49867	49949	77820	77820					0.08798411885345558
RWFRWAIRWFY	11	Unmodified	_RWFRWAIRWFY_					0	0	0			REV__ENST00000419746.5_1_2:179403628-179404009:+|nuORF	REV__ENST00000419746.5_1_2:179403628-179404009:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5133972167969	4	422.475569	1685.87317	-0.38969	-0.00016464	3.6159	0.0015276	3.2262	0.001363	422.4771957055782	31.999	0.40181	32.01	31.742	32.144	0.011797					11	9	2	0	0	0	0.024902	1	2137	2137		1.4188	1.0782	1	61916	+		71224	32148	49868	49950	77821	77821					0.057669111445648014
RWFTLWRWWTR	11	Unmodified	_RWFTLWRWWTR_					0	0	0			REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2	REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.7585754394531	4	424.227023	1692.87898	-0.16316	-6.9219E-05	4.3992	0.0018663	4.2361	0.0017971	424.22887726871653	31.287	0.65557	31.102	30.824	31.48	-0.18503					20	16	2	0	0	0	0.024904	1	2113	2113		0.37141	0	1	117250	+		71225	36864	49869	49951	77822	77822					0.060260096562387844
RWFVLSYWALR	11	Unmodified	_RWFVLSYWALR_					0	0	0		ENST00000526451.5_1_11:65765641-65765800:-|nuORF	ENST00000526451.5_1_11:65765641-65765800:-|nuORF	ENST00000526451.5_1_11:65765641-65765800:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.794189453125	3	499.610223	1495.80884	-0.22653	-0.00011318	1.433	0.00071596	1.2065	0.00060278	499.9451900574365	17.505	0.29841	17.298	17.166	17.464	-0.20669					14	5	3	0	0	0	0.024888	1	181	181		6.001	0	1	47952			71226	16122	49870	49952	77823	77823					0.08076711267813153
RWGNEMSQYSI	11	Unmodified	_RWGNEMSQYSI_					0	0	0			REV__ENST00000555220.5_1_14:64916080-64916173:-|nuORF	REV__ENST00000555220.5_1_14:64916080-64916173:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2455749511719	3	457.543438	1369.60848	-1.0524	-0.00048154	-4.1636	-0.001905	-5.2161	-0.0023866	457.54145861505407	24.827	0.71532	24.78	24.264	24.98	-0.047148					26	15	2	0	0	0	0.024745	1	1078	1078		35.496	8.7459	1	55353	+		71227	35003	49871	49953	77824	77824					-0.06153551181955663
RWILLRAE	8	Unmodified	_RWILLRAE_					0	0	0		ENST00000462546.5_1_7:23719819-23732088:+|nuORF	ENST00000462546.5_1_7:23719819-23732088:+|nuORF	ENST00000462546.5_1_7:23719819-23732088:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	528.8181762695312	2	528.819276	1055.624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.43	1	70.173	69.673	70.673	-0.25713								0	0	0	0.7608	1	8207	8207		37.159	0.71236	1				71228	14710	49872	49954	77825	77825					0.09841148188024818
RWKQSCHSCIE	11	Unmodified	_RWKQSCHSCIE_					0	0	0			REV__ENST00000230640.9_1_5:54603803-54618219:+|nuORF	REV__ENST00000230640.9_1_5:54603803-54618219:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.7638854980469	3	459.544784	1375.61252	0.28504	0.00013099	-0.065143	-2.9936E-05	0.2199	0.00010105	459.54502832639554	23.525	0.41679	23.323	23.195	23.612	-0.20193					10	9	2	0	0	0	0.024734	1	941	941		41.08	11.835	1	32630	+		71229	29407	49873	49955	77826	77826					-0.060257849598883695
RWLEVINI	8	Unmodified	_RWLEVINI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3245239257812	2	521.805834	1041.59712	-0.23006	-0.00012005	-1.4066	-0.00073396	-1.6366	-0.00085401	521.8051232947746	49.601	0.91393	49.45	48.794	49.708	-0.1512					33	24	2	0	0	0	0.027866	1	5131	5131		82.305	0	1	1107200			71230	6479	49874	49956	77827	77827					0.07798039576823612
RWLGWLGS	8	Unmodified	_RWLGWLGS_					0	0	0		ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENST00000525366.5_1_11:61112846-61113972:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.25775146484375	2	487.763969	973.513385	-1.2515	-0.00061044	0.14308	6.9791E-05	-1.1084	-0.00054064	487.7639445018899	22.657	0.79971	22.73	22.268	23.068	0.073954					28	16	3	0	0	0	0.027866	1	800	800		25.45	0	1	48810			71231	16092	49875	49957	77828	77828					0.025569281998059523
RWLIPVIPAFW	11	Unmodified	_RWLIPVIPAFW_					0	0	0		ENST00000571914.1_1_17:79604371-79604644:+|nuORF	ENST00000571914.1_1_17:79604371-79604644:+|nuORF	ENST00000571914.1_1_17:79604371-79604644:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.6079406738281	3	466.607931	1396.80196	0.19292	9.0016E-05	0.2452	0.00011441	0.43811	0.00020443	466.6079363438645	99.826	0.91731	99.837	99.179	100.1	0.010109					66	22	4	0	0	0	1.0712	1	12760	12760		19.263	2.7328	1	854030			71232	17050	49876	49958	77829	77829					0.11943398387211346
RWLLLELKREF	11	Unmodified	_RWLLLELKREF_					0	0	0		ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.29443359375	3	501.632916	1501.87692	-0.16014	-8.0329E-05	3.1043	0.0015572	2.9442	0.0014769	501.6343454058915	102.12	1.3548	102.13	101.43	102.78	0.0073471					57	31	2	0	0	0	0.024884	1	13049	13049		10.587	5.7007	1	343120			71233	1380	49877	49959	77830	77830					0.14605536127760388
RWLVSRLQQTK	11	Unmodified	_RWLVSRLQQTK_					0	0	0			REV__ANKDD1A|p.E407K|1|0.21|ENSG00000166839|chr15:64947461-64947461|G/A|missense_variant	REV__ANKDD1A|p.E407K|1|0.21|ENSG00000166839|chr15:64947461-64947461|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2842102050781	3	472.280765	1413.82047	0.75158	0.00035496	3.6596	0.0017283	4.4112	0.0020833	472.2822733067688	97.987	1.763	97.997	97.283	99.046	0.010239					67	40	2	0	0	0	1.0895	1	12607	12607		14.243	0.15724	1	360770	+		71234	19136	49878	49960	77831	77831					0.13010908291107626
RWLYDSDA	8	Unmodified	_RWLYDSDA_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.2789306640625	2	513.237981	1024.46141	-0.091532	-4.6978E-05	-3.984	-0.0020447	-4.0755	-0.0020917	513.2357124820796	58.506	0.61359	58.318	58.05	58.663	-0.18795					35	14	3	0	0	0	0.027866	1	6402	6402		26.796	0	1	978620	+		71235	36860	49879	49961	77832	77832					-0.049842800046235425
RWMSLFRWWYL	11	Unmodified	_RWMSLFRWWYL_					0	0	0			REV__RNF175|p.G110R|1|0.53|ENSG00000145428|chr4:153728280-153728280|C/T|missense_variant	REV__RNF175|p.G110R|1|0.53|ENSG00000145428|chr4:153728280-153728280|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.802734375	3	548.614979	1642.82311	-0.36071	-0.00019789	-3.7146	-0.0020379	-4.0753	-0.0022358	548.6127537263786	30.881	0.41859	30.728	30.468	30.887	-0.15231					23	9	4	0	0	0	0.024902	1	1968	1968		3.026	1.704	1	118270	+		71236	37444	49880	49962	77833	77833					0.02741040424439234
RWNSMTLD	8	Unmodified	_RWNSMTLD_					0	0	0		ENSG00000175764|ENST00000321582|TTLL11	ENSG00000175764|ENST00000321582|TTLL11	ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26171875	2	511.739834	1021.46511	0.25671	0.00013137	1.4957	0.00076542	1.7524	0.0008968	511.7404269856329	83.844	0.81303	83.706	83.424	84.237	-0.1386					42	18	4	0	0	0	0.027866	1	10137	10137		37.159	0	1	377010			71237	8588	49881	49963	77834	77834					-0.04475933502408225
RWPNQLIL	8	Unmodified	_RWPNQLIL_					0	0	0		ENST00000592891.1_1_19:55831331-55832446:-|nuORF;ENSG00000180061|ENST00000326652|TMEM150B	ENST00000592891.1_1_19:55831331-55832446:-|nuORF	ENST00000592891.1_1_19:55831331-55832446:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8252563476562	2	520.306001	1038.59745	-1.0462	-0.00054435	-1.3048	-0.00067891	-2.351	-0.0012233	520.3061985342225	81.158	0.55898	81.182	80.852	81.411	0.023911					19	13	2	0	0	0	0.027866	1	10060	10060		44.531	12.576	1	194660			71238	8957	49882	49964	77835	77835					0.07969459296691639
RWPRALEV	8	Unmodified	_RWPRALEV_					0	0	0		ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7923583984375	2	513.795801	1025.57705	-0.97654	-0.00050174	-3.4581	-0.0017768	-4.4347	-0.0022785	513.7939858924851	25.56	0.75742	25.56	25.285	26.043	0					63	17	5	0	0	0	0.74904	1	1219	1219		63.306	6.5852	1	1496600			71239	10977	49883	49965	77836	77836					0.0652828863690047
RWRHWRRRLES	11	Unmodified	_RWRHWRRRLES_					0	0	0			REV__ENSG00000215644|ENST00000400723|GCGR	REV__ENSG00000215644|ENST00000400723|GCGR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.5246887207031	4	410.230362	1636.89234	0.12515	5.134E-05	-4.144	-0.0017	-4.0189	-0.0016487	410.47953976057255	55.26	0.17339	55.029	54.891	55.065	-0.23087					5	4	2	0	0	0	0.024902	1	5895	5895		1.4188	1.0473	1	53497	+		71240	28810	49884	49966	77837	77837					0.09937260488209176
RWRKLYRAN	9	Unmodified	_RWRKLYRAN_					0	0	0		nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000486681.5_3_1:2036198-2076794:+|nuORF	nc|ENSG00000067606|Q05513-3|PRKCZ	nc|ENSG00000067606|Q05513-3|PRKCZ	MSMS	OPSCC_39_ClassI_Rep-2	2	421.5807189941406	3	421.579146	1261.71561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.422	1	17.279	16.779	17.779	-0.14278								0	0	0	0.72504	1	156	156		14.865	0.77886	1				71241	1366	49885	49967	77838	77838					0.09521831605229636
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3184814453125	3	530.9844	1589.93137	-0.36117	-0.00019178	4.0465	0.0021486	3.6854	0.0019569	530.9851788291793	103.95	1.1244	103.95	103.35	104.48	0.0031357					81	28	5	0	0	0	1.1135	2	13287	13287;13292		6.3209	3.1096	1	138660	+		71242	28695	49886	49968	77839;77840	77839					0.1600026951819018
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3189086914062	3	530.9844	1589.93137	-0.038262	-2.0316E-05	3.2119	0.0017055	3.1737	0.0016852	530.9849186522008	104.1	1.5237	104.1	103.14	104.67	-0.0032196					78	36	4	0	0	0	1.1135	1	13245	13245		5.6988	2.4875	1	134220	+		71243	28695	49886	49968	77841	77841					0.1600026951819018
RWRSAVGC	8	Unmodified	_RWRSAVGC_					0	0	0			REV__nc|ENSG00000204231|P28702-3|RXRB	REV__nc|ENSG00000204231|P28702-3|RXRB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.73858642578125	2	467.737428	933.460304	-1.2142	-0.00056792	3.4673	0.0016218	2.2531	0.0010539	467.7389164460177	26.143	2.4161	25.98	25.457	27.873	-0.16331					129	61	4	0	0	0	0.96719	1	1339	1339		42.474	3.6683	1	5217800	+		71244	28576	49887	49969	77842	77842					-0.009087728545068785
RWSRAEAVC	9	Unmodified	_RWSRAEAVC_					0	0	0		ENST00000541477.5_1_12:7032669-7032828:+|nuORF	ENST00000541477.5_1_12:7032669-7032828:+|nuORF	ENST00000541477.5_1_12:7032669-7032828:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2837524414062	2	539.26655	1076.51855	-0.42656	-0.00023003	-3.5075	-0.0018915	-3.934	-0.0021215	539.2644788290504	41.756	0.46786	41.633	41.456	41.924	-0.12299					21	12	2	0	0	0	0.024427	1	3709	3709		51.335	14.176	1	160040			71245	16438	49888	49970	77843	77843					-0.016651359999059423
RWTCCRVVD	9	Unmodified	_RWTCCRVVD_					0	0	0			REV__ENST00000395876.6_1_22:50523614-50523686:-|nuORF	REV__ENST00000395876.6_1_22:50523614-50523686:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7838134765625	2	569.268235	1136.52192	-0.033071	-1.8826E-05	-0.82715	-0.00047087	-0.86022	-0.00048969	569.2676691973824	24.287	1.2505	24.113	23.743	24.993	-0.17484					80	27	5	0	0	0	0.024405	1	1128	1128		53.351	15.54	1	2920100	+		71246	31718	49889	49971	77844	77844					-0.04088209217525218
RWTYFTKV	8	Unmodified	_RWTYFTKV_					0	0	0			REV__nc|ENSG00000165195|P37287-3|PIGA	REV__nc|ENSG00000165195|P37287-3|PIGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.2815551757812	2	550.798009	1099.58147	-0.87927	-0.0004843	-4.069	-0.0022412	-4.9483	-0.0027255	550.7963316023971	61.718	0.63284	61.54	61.37	62.003	-0.17781					18	15	2	0	0	0	0.027866	1	6967	6967		27.882	0	1	1077800	+		71247	25855	49890	49972	77845	77845					0.03565753059820054
RWVDCKNF	8	Unmodified	_RWVDCKNF_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|124|1|anti-sense;chr2:222572022-222586338|114|12.89|0.25|5.66|-|0|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|11	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|124|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|124|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2882690429688	2	534.258194	1066.50183	-0.057352	-3.0641E-05	-1.7801	-0.00095102	-1.8374	-0.00098167	534.2571071094127	25.392	0.24839	25.22	25.034	25.282	-0.17151					8	5	2	0	0	0	0.027866	1	1161	1161		37.159	11.709	1	85148			71248	377	49891	49973	77846	77846					-0.02875636885869426
RWVDGCLW	8	Unmodified	_RWVDGCLW_					0	0	0			REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__ENSG00000100346|ENST00000402142|CACNA1I	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.7488403320312	2	517.747462	1033.48037	-0.23961	-0.00012406	2.9097	0.0015065	2.6701	0.0013825	517.7489766143084	35.622	0.48058	35.435	35.14	35.621	-0.18675					30	12	4	0	0	0	0.97924	1	2701	2701		40.573	7.057	1	1756100	+		71249	21095;36517	49892	49974	77847	77847					-0.03503021914571036
RWVGALASV	9	Unmodified	_RWVGALASV_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7774658203125	2	479.777077	957.5396	0.59286	0.00028444	1.6986	0.00081494	2.2914	0.0010994	479.7779077586707	86.005	1.7104	85.809	85.301	87.012	-0.19508					88	39	3	0	0	0	0.50848	2	10415	10415;10451		58.782	10.866	1	554990			71250	2792	49893	49975	77848;77849	77848					0.05913197371273782
RWVGALASV	9	Unmodified	_RWVGALASV_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7767639160156	2	479.777077	957.5396	0.57933	0.00027795	0.8928	0.00042834	1.4721	0.00070629	479.77781162025775	85.935	1.6683	85.785	85.327	86.996	-0.14967					90	38	5	0	0	0	0.29158	2	10451	10428;10451		76.774	5.3962	1	631070			71251	2792	49893	49975	77850;77851	77851					0.05913197371273782
RWVQFKRFV	9	Unmodified	_RWVQFKRFV_					0	0	0			REV__nc|ENSG00000099958|Q96Q80-5|DERL3	REV__nc|ENSG00000099958|Q96Q80-5|DERL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3687744140625	2	633.366924	1264.7193	-0.29408	-0.00018626	3.7323	0.0023639	3.4382	0.0021777	633.3692359640979	98.702	1.5361	98.534	98.071	99.607	-0.16862					74	35	3	0	0	0	0.90698	1	12216	12216		31.955	2.7848	1	281430	+		71252	21026	49894	49976	77852	77852					0.09752501379057321
RWWFWRKRESM	11	Unmodified	_RWWFWRKRESM_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.32568359375	3	556.617383	1666.83032	-0.282	-0.00015697	-2.1995	-0.0012243	-2.4815	-0.0013812	556.9504555690487	54.084	0.27235	53.937	53.748	54.02	-0.14723					11	7	2	0	0	0	0.024888	1	5836	5836		6.001	4.5823	1	162180			71253	2337	49895	49977	77853	77853					0.023577730248462103
RWWQLRHRLWF	11	Unmodified	_RWWQLRHRLWF_					0	0	0			REV__ENSG00000256525|ENST00000539111|POLG2	REV__ENSG00000256525|ENST00000539111|POLG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2698974609375	3	561.975899	1682.90587	-0.24761	-0.00013915	-0.29177	-0.00016397	-0.53937	-0.00030312	562.310237218207	26.292	0.16964	26.123	26.019	26.188	-0.16816					7	4	2	0	0	0	0.024879	1	1341	1341		12.957	9.7462	1	93777	+		71254	29081	49896	49978	77854	77854					0.09173118267426617
RYCKKLIRFV	10	Unmodified	_RYCKKLIRFV_					0	0	0			REV__ENSG00000163825|ENST00000296142|RTP3	REV__ENSG00000163825|ENST00000296142|RTP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.6011657714844	3	442.60067	1324.78018	0.19098	8.4528E-05	0.068232	3.02E-05	0.25921	0.00011473	442.6009574074855	102.43	0.67945	102.3	102.03	102.71	-0.1293					50	15	4	0	0	0	1.1228	1	12708	12708		22.58	0.79923	1	675520	+		71255	25642	49897	49979	77855	77855					0.13078270366986544
RYDLIEEYHGR	11	Unmodified	_RYDLIEEYHGR_					0	0	0		TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	TRPM2|p.H1068Y|1|0.3|ENSG00000142185|chr21:44417982-44417982|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2701110839844	3	484.240635	1449.70008	-0.47874	-0.00023182	-3.089	-0.0014958	-3.5677	-0.0017276	484.5733207331682	27.161	0.36636	27.148	26.911	27.277	-0.012983					18	9	2	0	0	0	0.02483	1	1463	1463		10.998	0	1	143830			71256	38108	49898	49980	77856	77856					-0.006785444931665552
RYDLTVHF	8	Unmodified	_RYDLTVHF_					0	0	0		ENST00000575412.1_1_16:24953198-24955137:-|nuORF	ENST00000575412.1_1_16:24953198-24955137:-|nuORF	ENST00000575412.1_1_16:24953198-24955137:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2484741210938	2	525.771991	1049.52943	-0.65176	-0.00034268	-1.8492	-0.00097228	-2.501	-0.001315	525.7709848122826	26.669	0.32155	26.506	26.344	26.666	-0.16331					12	7	2	0	0	0	0.027866	1	1397	1397		25.45	0.93098	1	85347			71257	17098	49899	49981	77857	77857					0.006645896460213407
RYFRQKLT	8	Unmodified	_RYFRQKLT_					0	0	0		nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3	nc|ENSG00000168014|Q4AC94-1|C2CD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.7991333007812	2	556.322183	1110.62981	0.3681	0.00020478	-1.2523	-0.00069667	-0.88418	-0.00049189	556.3211774617353	40.934	0.32705	40.811	40.689	41.016	-0.12317					9	8	2	0	0	0	0.027866	1	3639	3639		18.324	0	1	44422			71258	7770	49900	49982	77858	77858					0.0789224669970281
RYGEKGKAIR	10	Unmodified	_RYGEKGKAIR_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3417358398438	2	589.343646	1176.67274	-1.1197	-0.00065991	0.14868	8.7621E-05	-0.97107	-0.00057229	589.3435077588188	103.81	0.67852	103.68	103.38	104.06	-0.12927					45	16	4	0	0	0	1.1329	1	12908	12908		27.882	0	1	466270			71259	9640	49901	49983	77859	77859					0.09147016757128767
RYGLLVESH	9	Unmodified	_RYGLLVESH_					0	0	0			REV__ENST00000261038.5_1_3:122598211-122598370:+|nuORF	REV__ENST00000261038.5_1_3:122598211-122598370:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3319702148438	2	537.290548	1072.56654	-0.84724	-0.00045521	-4.0242	-0.0021622	-4.8714	-0.0026174	537.2883146526698	22.888	0.77525	22.888	22.665	23.441	0					31	17	2	0	0	0	0.024539	1	903	903		27.882	0	1	69323	+		71260	29608	49902	49984	77860	77860					0.033162611917987306
RYHFSKDCELC	11	Unmodified	_RYHFSKDCELC_					0	0	0			REV__ENSG00000140548|ENST00000268154|ZNF710	REV__ENSG00000140548|ENST00000268154|ZNF710	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.7817077636719	3	467.54104	1399.60129	-0.66874	-0.00031266	-1.7665	-0.00082593	-2.4353	-0.0011386	467.5401263990027	29.54	0.16932	29.295	29.229	29.399	-0.24524					5	3	2	0	0	0	0.02477	1	1814	1814		28.577	6.0151	1	23585	+		71261	24028	49903	49985	77861	77861					-0.08252607054032524
RYIFTMTN	8	Unmodified	_RYIFTMTN_					0	0	0			REV__nc|ENSG00000211821|A0JD36|TRDV2	REV__nc|ENSG00000211821|A0JD36|TRDV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2628173828125	2	523.260402	1044.50625	-0.24345	-0.00012739	1.9098	0.00099931	1.6663	0.00087192	523.2613759850262	106.8	0.5076	106.67	106.45	106.95	-0.12381					40	16	3	0	0	0	0.94517	1	13282	13282		45.952	8.7928	1	292760	+		71262	37117	49904	49986	77862	77862					-0.014221724629123855
RYIMSWLR	8	Unmodified	_RYIMSWLR_					0	0	0			REV__ENST00000562237.5_1_16:69166520-69170710:+|nuORF	REV__ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.8067626953125	2	562.805311	1123.59607	-0.29143	-0.00016402	2.4922	0.0014027	2.2008	0.0012386	562.8065618321316	34.75	1.0777	34.544	34.201	35.279	-0.20695					64	26	6	0	0	0	0.97924	1	2585	2585		40.573	1.3198	1	1797200	+		71263	30245	49905	49987	77863	77863					0.03921501936270033
RYKPGTLAL	9	Unmodified	_RYKPGTLAL_					0	0	0		ENSG00000269466|ENST00000598383|H3Y1;ENSG00000268799|ENST00000600799|H3Y2	ENSG00000269466|ENST00000598383|H3Y1	ENSG00000269466|ENST00000598383|H3Y1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.80364990234375	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	0.85329	1	10574	10574		35.618	2.8059	1	2572600			71264	10990	49906	49988	77864	77864					0.08902039576844345
RYKSDLSV	8	Unmodified	_RYKSDLSV_					0	0	0			REV__nc|ENSG00000235109|Q96LW9-2|ZSCAN31	REV__nc|ENSG00000235109|Q96LW9-2|ZSCAN31	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.26617431640625	2	484.263999	966.513445	-0.31045	-0.00015034	0.68389	0.00033118	0.37343	0.00018084	484.26401019616964	57.017	0.71821	57.017	56.778	57.496	0					70	19	5	0	0	0	0.64735	1	6419	6419		71.877	13.096	1	3922600	+		71265	28923	49907	49989	77865	77865					0.02884883409149097
RYLSDDVDDI	10	Unmodified	_RYLSDDVDDI_					0	0	0		nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;nc|ENSG00000107771|Q9H7U1-2|CCSER2	nc|ENSG00000107771|Q9H7U1|CCSER2	nc|ENSG00000107771|Q9H7U1|CCSER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.55999755859375	3	404.191059	1209.55135	0.39672	0.00016035	3.7984	0.0015353	4.1952	0.0016956	404.1924729086674	33.597	0.32179	33.366	33.232	33.554	-0.23107					12	7	2	0	0	0	0.03519	1	2405	2405		43.651	4.8972	1	138730			71266	2854	49908	49990	77866	77866					-0.045046951867107055
RYLSLVFHF	9	Unmodified	_RYLSLVFHF_					0	0	0		ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.323974609375	2	591.326934	1180.63931	-0.38705	-0.00022887	-3.5373	-0.0020917	-3.9244	-0.0023206	591.3247107370402	47.214	1.5891	47.273	46.957	48.546	0.059097					94	45	4	0	0	0	0.31247	1	4658	4658		73.975	2.0973	1	4011200			71267	13223	49909	49991	77867	77867					0.056220149852151735
RYLSLVFHF	9	Unmodified	_RYLSLVFHF_					0	0	0		ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	591.326934	1180.63931	-1.4662	-0.000867	-2.3847	-0.0014101	-3.8509	-0.0022771	591.3254184693396	47.222	0.88713	47.222	46.892	47.779	0	0.093397	0.00097057	NaN	73.975	74	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3603500			71268	13223	49909	49991							0.056220149852151735
RYLSLVFHF	9	Unmodified	_RYLSLVFHF_					0	0	0		ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	591.326934	1180.63931	-0.57234	-0.00033844	-3.2375	-0.0019144	-3.8098	-0.0022529	591.324892933812	47.393	1.7473	47.24	46.899	48.646	-0.15301	0.11071	-3.8014E-05	NaN	73.975	101	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3373200			71269	13223	49909	49991							0.056220149852151735
RYLSLVFHF	9	Unmodified	_RYLSLVFHF_					0	0	0		ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	591.326934	1180.63931	-0.6103	-0.00036089	-2.7655	-0.0016353	-3.3758	-0.0019962	591.3250024305545	46.988	0.32936	46.892	46.754	47.083	-0.096649	-0.23732	0.00052021	NaN	73.975	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134310			71270	13223	49909	49991							0.056220149852151735
RYLSLVFHF	9	Unmodified	_RYLSLVFHF_					0	0	0		ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	591.326934	1180.63931	-0.59205	-0.0003501	-3.2533	-0.0019238	-3.8453	-0.0022739	591.3247997428713	47.425	0.51939	47.156	46.908	47.427	-0.26939	0.026657	-5.6687E-05	NaN	73.975	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134550			71271	13223	49909	49991							0.056220149852151735
RYLSLVFHF	9	Unmodified	_RYLSLVFHF_					0	0	0		ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	ENST00000378026.4_3_12:106632296-106632356:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	591.326934	1180.63931	-0.78893	-0.00046652	-3.6008	-0.0021292	-4.3897	-0.0025958	591.3250466816952	47.185	0.45259	46.991	46.779	47.232	-0.19387	-0.13785	-0.00046763	NaN	73.975	17	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124520			71272	13223	49909	49991							0.056220149852151735
RYLSRGASGT	10	Unmodified	_RYLSRGASGT_					0	0	0		ENSG00000104312|ENST00000220751|RIPK2;RIPK2|p.S214Ifs*26|1|0.21|ENSG00000104312|chr8:89769919-89769920|-/AT|frameshift_variant	ENSG00000104312|ENST00000220751|RIPK2	ENSG00000104312|ENST00000220751|RIPK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2846069335938	2	534.283254	1066.55196	-0.37302	-0.0001993	2.4947	0.0013329	2.1217	0.0011336	534.2845398871997	105.79	0.63905	105.79	105.54	106.18	0.00015259					52	22	3	0	0	0	1.1088	1	13518	13518		31.53	1.0262	1	294350			71273	2557	49910	49992	77868	77868					0.021341890436588073
RYNQAEHP	8	Unmodified	_RYNQAEHP_					0	0	0			REV__nc|ENSG00000152128|Q8TC26-2|TMEM163	REV__nc|ENSG00000152128|Q8TC26-2|TMEM163	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.27728271484375	2	507.741222	1013.46789	-0.59377	-0.00030148	0.8808	0.00044722	0.28702	0.00014573	507.74151345711874	55.452	0.26572	55.236	55.07	55.336	-0.21551					10	7	2	0	0	0	0.027866	1	5922	5922		44.117	12.162	1	107330	+		71274	24818	49911	49993	77869	77869					-0.03830342053254299
RYNQWLKRRLP	11	Unmodified	_RYNQWLKRRLP_					0	0	0			REV__ENSG00000141569|ENST00000269383|TRIM65	REV__ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.6343078613281	3	510.631909	1528.8739	0.040542	2.0702E-05	4.4035	0.0022486	4.444	0.0022693	510.63400900848177	101.96	1.5186	101.83	100.98	102.5	-0.12666					101	36	4	0	0	0	1.1135	1	12692	12692		6.3209	0.6221	1	138840	+		71275	24107	49912	49994	77870	77870					0.1306170579364334
RYRPGTVAL	9	Unmodified	_RYRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.801025390625	2	516.801083	1031.58761	-0.77404	-0.00040003	0.54798	0.0002832	-0.22606	-0.00011683	516.8012048911206	36.829	1.1424	36.867	36.579	37.721	0.038044					71	29	4	0	0	0	0.59099	1	2894	2894		53.351	10.877	1	2738200			71276	7790	49913	49995	77871	77871					0.07308271291344681
RYRPGTVAL	9	Unmodified	_RYRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	516.801083	1031.58761	0.43698	0.00022583	-0.71509	-0.00036956	-0.27811	-0.00014373	516.8005415032402	36.863	1.0149	36.863	36.508	37.523	0	0.078177	-0.00061118	NaN	53.351	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2832300			71277	7790	49913	49995							0.07308271291344681
RYRPGTVAL	9	Unmodified	_RYRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	516.801083	1031.58761	-0.31247	-0.00016149	-0.1556	-8.0414E-05	-0.46807	-0.0002419	516.8008438825279	36.688	1.0478	36.624	36.294	37.342	-0.063385	-0.16041	-3.2889E-05	NaN	53.351	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2853300			71278	7790	49913	49995							0.07308271291344681
RYRQTGPH	8	Unmodified	_RYRQTGPH_					0	0	0		TENM1|p.L2021H|1|0.76|ENSG00000009694|chrX:124384848-124384848|A/T|missense_variant	TENM1|p.L2021H|1|0.76|ENSG00000009694|chrX:124384848-124384848|A/T|missense_variant	TENM1|p.L2021H|1|0.76|ENSG00000009694|chrX:124384848-124384848|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7666931152344	2	507.765032	1013.51551	4.4006	0.0022345	-0.9959	-0.00050569	3.4047	0.0017288	507.7643447112786	17.505	0.59251	17.254	17.076	17.669	-0.25049					26	11	4	0	0	0	1.0574	1	166	166		24.203	0	1	248650			71279	38061	49914	49996	77872	77872					0.009293569376040978
RYRVAPYEK	9	Unmodified	_RYRVAPYEK_					0	0	0			REV__ENSG00000136854|ENST00000373299|STXBP1	REV__ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	591.3242797851562	2	591.324922	1180.63529	-0.57234	-0.00033844	0.16395	9.6949E-05	-0.40839	-0.00024149	591.324892933812	47.393	1.7473	47.24	46.899	48.646	-0.15301					101	50	4	0	0	0	0.53979	1	4738	4738		56.721	10.749	1	3373200	+		71280	23689	49915	49997	77873	77873					0.05219925491496724
RYSKHSTNE	9	Unmodified	_RYSKHSTNE_					0	0	0			REV__ENSG00000133687|ENST00000539277|TMTC1	REV__ENSG00000133687|ENST00000539277|TMTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2701416015625	2	561.270344	1120.52613	-1.2106	-0.00067947	-0.35419	-0.0001988	-1.5648	-0.00087826	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	0.75397	1	1432	1432		42.396	1.618	1	242840000	+		71281	23386	49916	49998	77874	77874					-0.029307051986279475
RYSPIPRHMLA	11	Unmodified	_RYSPIPRHMLA_					0	0	0		ENSG00000082458|ENST00000374360|DLG3	ENSG00000082458|ENST00000374360|DLG3	ENSG00000082458|ENST00000374360|DLG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.2078552246094	3	447.580046	1339.71831	0.32382	0.00014493	3.3268	0.001489	3.6506	0.001634	447.5815894207373	21.071	0.58023	20.894	20.581	21.162	-0.17721					15	11	2	0	0	0	0.024723	1	628	628		19.627	3.0971	1	25518			71282	1733	49917	49999	77875	77875					0.06203918947858256
RYTLGDPKGAA	11	Unmodified	_RYTLGDPKGAA_					0	0	0		nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	nc|ENSG00000134333|P00338-2|LDHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.8101196289062	2	574.806562	1147.59857	4.0221	0.0023119	-1.2455	-0.00071593	2.7766	0.001596	574.8056713636646	18.052	0.8699	18.112	17.825	18.695	0.06036					30	18	2	0	0	0	1.0777	1	223	223		17.468	2.6031	1	69054			71283	18286	49918	50000	77876	77876					0.03067628874964612
RYVTIAYGI	9	Unmodified	_RYVTIAYGI_					0	0	0			REV__ENSG00000152778|ENST00000371795|IFIT5	REV__ENSG00000152778|ENST00000371795|IFIT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2737426757812	2	528.297842	1054.58113	-1.3939	-0.00073638	-2.1086	-0.001114	-3.5025	-0.0018504	528.7990016890939	92.007	0.56036	92.007	91.772	92.333	0					26	13	3	0	0	0	0.023817	1	11648	11648		71.296	35.677	1	272410	+		71284	24863	49919	50001	77877	77877					0.056023333399252806
SAAAAPASLPP	11	Unmodified	_SAAAAPASLPP_					0	0	0		nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214	nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-5|NUP214	MSMS	OPSCC_39_ClassI_Rep-3	3	476.7574157714844	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.4	1	100.39	99.892	100.89	-0.0050888								0	0	0	1.0281	1	12768	12768		42.396	1.8235	1				71285	18248	49920	50002	77878	77878					0.024854810348415413
SAAAARFR	8	Unmodified	_SAAAARFR_					0	0	0			REV__ENST00000373433.8_1_20:36662020-36662074:+|nuORF	REV__ENST00000373433.8_1_20:36662020-36662074:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.2384033203125	2	425.238119	848.461684	-0.39343	-0.0001673	0.65652	0.00027918	0.26309	0.00011188	425.2382580264656	29.705	0.89217	29.46	29.185	30.078	-0.24523					48	20	4	0	0	0	1.0516	1	1844	1844		29.15	3.6994	1	984530	+		71286	31254	49921	50003	77879	77879					0.031391845059033585
SAAANNNICGV	11	Unmodified	_SAAANNNICGV_					0	0	0		nc|ENSG00000125851|P16519-2|PCSK2;nc|ENSG00000125851|P16519-3|PCSK2;ENSG00000125851|ENST00000262545|PCSK2	nc|ENSG00000125851|P16519-2|PCSK2	nc|ENSG00000125851|P16519-2|PCSK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7997436523438	2	517.240198	1032.46584	0.45994	0.0002379	-1.4402	-0.00074495	-0.9803	-0.00050705	517.2402404954752	104.49	0.1776	104.32	104.2	104.38	-0.16791					8	4	3	0	0	0	0.024727	1	12990	12990		39.253	15.05	1	19684			71287	4152	49922	50004	77880	77880					-0.04909138853372497
SAAAVPNGGLG	11	Unmodified	_SAAAVPNGGLG_					0	0	0			REV__ENSG00000115507|ENST00000282549|OTX1	REV__ENSG00000115507|ENST00000282549|OTX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2590026855469	2	457.240524	912.466495	-0.33015	-0.00015096	2.0159	0.00092176	1.6858	0.0007708	457.2412683378447	28.203	0.49594	28.199	28.003	28.499	-0.0042019					20	11	2	0	0	0	0.024762	1	1610	1610		45.972	13.16	1	119140	+		71288	22208	49923	50005	77881	77881					0.006760238580113764
SAAAVPNGGLG	11	Unmodified	_SAAAVPNGGLG_					0	0	0			REV__ENSG00000115507|ENST00000282549|OTX1	REV__ENSG00000115507|ENST00000282549|OTX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.25909423828125	2	457.240524	912.466495	-0.21073	-9.6356E-05	3.1741	0.0014513	2.9634	0.001355	457.2420567540152	27.932	0.88144	28.014	27.571	28.453	0.081293					34	21	2	0	0	0	0.024768	1	1524	1524		39.253	15.05	1	176770	+		71289	22208	49923	50005	77882	77882					0.006760238580113764
SAAAVSARV	9	Unmodified	_SAAAVSARV_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.2384948730469	2	416.237784	830.461016	-0.068542	-2.853E-05	2.074	0.00086327	2.0054	0.00083474	416.2384853766801	21.846	1.7794	21.757	21.5	23.279	-0.089378					72	38	4	0	0	0	0.75397	1	700	700		42.396	6.7778	1	525730	+		71290	32238	49924	50006	77883	77883					0.03900345066188038
SAADHTLVMD	10	Unmodified	_SAADHTLVMD_					0	0	0		ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2409057617188	2	530.242406	1058.47026	-0.090946	-4.8223E-05	-2.6678	-0.0014146	-2.7587	-0.0014628	530.2409838189699	107.43	1.1014	107.43	106.37	107.47	0.0018311					68	32	3	0	0	0	1.0002	1	13703	13703		45.972	6.7194	1	407140			71291	14011	49925	50007	77884	77884					-0.05663674430456922
SAAEGVGEPGA	11	Unmodified	_SAAEGVGEPGA_					0	0	0		ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7743835449219	2	472.719621	943.42469	-0.024817	-1.1732E-05	-2.4163	-0.0011422	-2.4411	-0.001154	472.71816660920194	36.32	2.1559	36.358	35.337	37.493	0.038044					100	57	3	0	0	0	0.024768	1	2930	2930		12.812	0	1	392740			71292	7010	49926	50008	77885	77885					-0.04928576621182401
SAAGRAQAIL	10	Unmodified	_SAAGRAQAIL_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2779541015625	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	1.1088	1	10211	10211		31.53	1.0262	1	4947400	+		71293	23137	49927	50009	77886	77886					0.06031992020314192
SAAIETATARI	11	Unmodified	_SAAIETATARI_					0	0	0		ENSG00000127946|ENST00000336926|HIP1;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1	ENSG00000127946|ENST00000336926|HIP1	ENSG00000127946|ENST00000336926|HIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3262939453125	2	552.306395	1102.59824	-0.043475	-2.4012E-05	2.1085	0.0011645	2.065	0.0011405	552.3085429384683	54.537	0.41195	54.292	54.103	54.515	-0.2453					16	11	2	0	0	0	0.024727	1	5766	5766		24.519	3.5723	1	111930			71294	4267	49928	50010	77887	77887					0.05104209155092576
SAALEGRGW	9	Unmodified	_SAALEGRGW_					0	0	0			REV__ENST00000361981.7_1_X:153127328-153128099:-|nuORF	REV__ENST00000361981.7_1_X:153127328-153128099:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.27154541015625	2	473.740691	945.466829	-0.29784	-0.0001411	0.72983	0.00034575	0.43199	0.00020465	473.74077602455066	34.957	0.59819	34.745	34.479	35.077	-0.21246					33	14	3	0	0	0	0.023635	1	2608	2608		39.253	0	1	1052300	+		71295	30961	49929	50011	77888	77888					-0.00808556422134643
SAALSCLLDGP	11	Unmodified	_SAALSCLLDGP_					0	0	0			REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3140869140625	2	523.762975	1045.5114	-0.31317	-0.00016403	-3.759	-0.0019688	-4.0722	-0.0021329	523.7610012202382	73.124	0.56175	72.934	72.675	73.237	-0.19026					21	13	2	0	0	0	0.024778	1	8614	8614		44.377	0	1	222000	+		71296	28976	49930	50012	77889	77889					-0.009539133909584052
SAAPARPR	8	Unmodified	_SAAPARPR_					0	0	0			REV__ENSG00000158457|ENST00000486685|TSPAN33	REV__ENSG00000158457|ENST00000486685|TSPAN33	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2374267578125	2	413.238119	824.461684	0.064625	2.6705E-05	0.20368	8.4168E-05	0.2683	0.00011087	413.2381014992016	76.646	1.9747	76.395	74.998	76.972	-0.25163					131	48	3	0	0	0	1.0338	1	9108	9108		31.955	0	1	908900	+		71297	25196	49931	50013	77890	77890					0.04243184505901354
SAAPEVPKPT	10	Unmodified	_SAAPEVPKPT_					0	0	0			REV__nc|ENSG00000137337|Q14676-3|MDC1	REV__nc|ENSG00000137337|Q14676-3|MDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.77130126953125	2	498.771657	995.528761	-0.00883	-4.4042E-06	-1.3272	-0.00066195	-1.336	-0.00066636	498.77089615614955	104.88	1.8232	104.88	104.27	106.1	0.00097656					165	59	5	0	0	0	1.1329	1	13445	13445		27.882	1.1893	1	5457500	+		71298	23748	49932	50014	77891	77891					0.030817502063200664
SAARKALI	8	Unmodified	_SAARKALI_					0	0	0		ENST00000535970.5_1_12:123459581-123462874:+|nuORF;ENST00000542037.1_1_12:123461107-123462595:+|nuORF;ENST00000545396.5_1_12:123459798-123462874:+|nuORF;ENST00000538755.5_1_12:123459581-123462595:+|nuORF;ENST00000540866.2_1_12:123459879-123461705:+|nuORF;ENST00000545612.5_1_12:123459581-123463082:+|nuORF;ENST00000420319.6_1_12:123459798-123461705:+|nuORF;ENST00000538628.5_1_12:123459581-123461705:+|nuORF;nc|ENSG00000111325|Q6N063-2|OGFOD2;ENSG00000111325|ENST00000228922|OGFOD2	ENST00000535970.5_1_12:123459581-123462874:+|nuORF	ENST00000535970.5_1_12:123459581-123462874:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2120666503906	2	415.266345	828.518136	-0.70979	-0.00029475	0.72459	0.0003009	0.014795	6.1441E-06	415.26649009928894	27.46	0.32634	27.542	27.357	27.684	0.081291					11	8	2	0	0	0	0.027866	1	1471	1471		24.203	6.8378	1	75966			71299	3105	49933	50015	77892	77892					0.09701812342564153
SAARLTMMWEE	11	Unmodified	_SAARLTMMWEE_					0	0	0		nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	nc|ENSG00000132109|P19474-2|TRIM21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.7697448730469	3	442.205657	1323.59514	-0.66844	-0.00029559	0.96711	0.00042766	0.29867	0.00013207	442.2060804358394	20.265	0.39044	20.265	20.078	20.468	0					13	7	2	0	0	0	0.024801	1	528	528		23.378	0	1	18172			71300	4572	49934	50016	77893	77893					-0.05371125285569178
SAARLYYYW	9	Unmodified	_SAARLYYYW_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.7921752929688	2	596.792924	1191.57129	-0.65044	-0.00038818	0.4877	0.00029105	-0.16274	-9.7124E-05	596.7930331636047	66.196	0.74996	65.955	65.625	66.375	-0.24145					54	18	4	0	0	0	0.31037	2	7589	7576;7589		74.255	33.477	1	1966900			71301	8918	49935	50017	77894;77895	77895					-0.016828546654551246
SAARLYYYW	9	Unmodified	_SAARLYYYW_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.7922973632812	2	596.792924	1191.57129	-1.2454	-0.00074324	0.97526	0.00058203	-0.27012	-0.00016121	596.7933651601807	66.145	0.82609	65.932	65.588	66.414	-0.21327					49	20	3	0	0	0	0.2508	3	7592	7580;7592;7603		82.241	34.281	1	1738100			71302	8918	49935	50017	77896;77897;77898	77897					-0.016828546654551246
SAARLYYYW	9	Unmodified	_SAARLYYYW_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.7921752929688	2	596.792924	1191.57129	-0.72871	-0.00043489	0.66411	0.00039634	-0.064599	-3.8552E-05	596.7930970664576	66.194	0.77209	65.949	65.65	66.422	-0.24556					57	19	4	0	0	0	0.32811	2	7582	7572;7582		71.877	21.97	1	1917900			71303	8918	49935	50017	77899;77900	77900					-0.016828546654551246
SAARPGPVPA	10	Unmodified	_SAARPGPVPA_					0	0	0			REV__ENST00000490623.3_3_20:62370265-62370358:+|nuORF	REV__ENST00000490623.3_3_20:62370265-62370358:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7587890625	2	461.758884	921.503215	-0.94944	-0.00043841	0.37117	0.00017139	-0.57828	-0.00026702	461.7590663876545	30.859	1.7979	30.859	30.426	32.224	0					107	43	4	0	0	0	0.67706	1	2015	2015		68.787	2.3575	1	18293000	+		71304	33705	49936	50018	77901	77901					0.039323204745642215
SAASERRAV	9	Unmodified	_SAASERRAV_					0	0	0			REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	REV__TNKS1BP1|p.G1592Vfs*34|1|0.28|ENSG00000149115|chr11:57302133-57302133|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.2702331542969	2	473.756872	945.499192	-0.42782	-0.00020268	0.89872	0.00042577	0.4709	0.00022309	473.75736364459925	25.282	0.31476	25.247	25.037	25.351	-0.034395					12	7	3	0	0	0	0.024381	1	1137	1137		15.642	2.8301	1	81489	+		71305	24655	49937	50019	77902	77902					0.024262309808477767
SAAWGGLITL	10	Unmodified	_SAAWGGLITL_					0	0	0		ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;nc|ENSG00000165970|Q9Y345-2|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.77850341796875	2	494.776742	987.538931	-0.60669	-0.00030018	-2.8262	-0.0013984	-3.4329	-0.0016985	494.77586719633615	21.104	0.97571	21.104	20.562	21.537	0					41	19	4	0	0	0	0.96965	1	647	647		49.442	10.189	1	2393700			71306	7491	49938	50020	77903	77903					0.0446635793156247
SAAYDTSD	8	Unmodified	_SAAYDTSD_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.7614440917969	2	415.164148	828.313742	0.89577	0.00037189	-3.1815	-0.0013208	-2.2857	-0.00094894	415.1642159535092	87.804	0.11418	87.822	87.756	87.87	0.018555					4	2	2	0	0	0	0.027866	1	10984	10984		12.207	0	1	35892			71307	1633	49939	50021	77904	77904					-0.10728216329266616
SADGTLKLW	9	Unmodified	_SADGTLKLW_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.7655944824219	2	495.766374	989.518196	-0.45804	-0.00022708	-0.12796	-6.3436E-05	-0.58599	-0.00029051	495.76617910066665	62.358	0.54932	62.144	61.813	62.362	-0.21375					39	13	4	0	0	0	0.013293	3	7028	7005;7015;7028		180.87	0	1	4197100			71308	103	49940	50022	77905;77906;77907	77907					0.023017675519099612
SADGTLKLW	9	Unmodified	_SADGTLKLW_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7662658691406	2	495.766374	989.518196	-0.81396	-0.00040353	0.46207	0.00022908	-0.35189	-0.00017446	495.7665149990847	62.309	0.78182	62.131	61.654	62.435	-0.17781					57	20	4	0	0	0	0.016758	2	7001	7001;7014		153.04	0	1	4148300			71309	103	49940	50022	77908;77909	77908					0.023017675519099612
SADGTLKLW	9	Unmodified	_SADGTLKLW_					0	0	0		APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	APAF1|p.V937Efs*7|1|0.1|ENSG00000120868|chr12:98708672-98708673|-/AAAGGTT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7660827636719	2	495.766374	989.518196	-0.47262	-0.00023431	-0.083877	-4.1583E-05	-0.5565	-0.00027589	495.7661850394005	62.435	0.55072	62.177	61.897	62.448	-0.25824					43	13	4	0	0	0	0.013065	3	6998	6998;7008;7022		171.53	0	1	3794300			71310	103	49940	50022	77910;77911;77912	77910					0.023017675519099612
SADKTVALW	9	Unmodified	_SADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7665710449219	2	495.766374	989.518196	0.1322	6.5541E-05	-0.51772	-0.00025667	-0.38552	-0.00019113	495.7659991884084	56.123	0.75116	55.907	55.562	56.313	-0.21607					48	19	3	0	0	0	0.2101	1	6072	6072		87.696	2.7809	1	1759700			71311	6950	49941	50023	77913	77913					0.023017675519099612
SADKTVALW	9	Unmodified	_SADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7657470703125	2	495.766374	989.518196	-0.97561	-0.00048368	0.56535	0.00028028	-0.41027	-0.0002034	495.7665499102661	56.156	0.71506	55.941	55.602	56.317	-0.21551					42	18	3	0	0	0	0.247	1	6058	6058		82.75	16.321	1	1669200			71312	6950	49941	50023	77914	77914					0.023017675519099612
SADKTVALW	9	Unmodified	_SADKTVALW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000502424.1_1_5:14797477-14798464:-|nuORF	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	495.766374	989.518196	-0.87922	-0.00043589	0.46996	0.00023299	-0.40926	-0.0002029	495.76646641610154	56.043	0.91018	55.887	55.424	56.334	-0.15656	-0.024549	0.00025619	NaN	87.696	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1519500			71313	6950	49941	50023							0.023017675519099612
SADKTVKLW	9	Unmodified	_SADKTVKLW_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2950439453125	2	524.295299	1046.57605	-1.0934	-0.00057326	-1.0519	-0.00055152	-2.1453	-0.0011248	524.2953859267642	44.483	1.0044	44.378	43.78	44.784	-0.10468					62	26	4	0	0	0	0.1764	1	4160	4160		93.598	30.291	1	1357700			71314	5083	49942	50024	77915	77915					0.05462029477325814
SADKTVKLW	9	Unmodified	_SADKTVKLW_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MSMS	OPSCC_40_ClassI_Rep-3	6	524.2955322265625	2	524.295299	1046.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.691	1	44.48	43.98	44.98	-0.21109								0	0	0	0.07376	1	4176	4176		98.582	27.766	1				71315	5083	49942	50024	77916	77916					0.05462029477325814
SADRLLEGWLA	11	Unmodified	_SADRLLEGWLA_					0	0	0			REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	615.8291625976562	2	615.827495	1229.64044	-0.26249	-0.00016165	3.461	0.0021314	3.1985	0.0019697	615.8294527197208	98.711	1.4697	98.707	98.307	99.777	-0.0038834					85	33	3	0	0	0	0.93459	1	12556	12556		49.536	8.7579	1	889840	+		71316	34574	49943	50025	77917	77917					0.03480184563477451
SAEDVRKLCPD	11	Unmodified	_SAEDVRKLCPD_					0	0	0		CON__P12763	CON__P12763	CON__P12763	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.2135314941406	3	411.536172	1231.58669	-0.49564	-0.00020397	-0.62697	-0.00025802	-1.1226	-0.00046199	411.53530776456097	44.838	0.6637	44.585	44.318	44.981	-0.25252					29	16	3	0	0	0	0.024742	1	4170	4170		20.315	5.6213	1	188210		+	71317	519	49944	50026	77918	77918					-0.01984355930540005
SAEDVRKLCPD	11	Unmodified	_SAEDVRKLCPD_					0	0	0		CON__P12763	CON__P12763	CON__P12763	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	411.536172	1231.58669	-0.77166	-0.00031757	-1.4805	-0.0006093	-2.2522	-0.00092686	411.5354579428272	44.689	0.58772	44.589	44.354	44.942	-0.099445	0.013144	-0.00015925	NaN	20.315	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206660		+	71318	519	49944	50026							-0.01984355930540005
SAELHAAPGLL	11	Unmodified	_SAELHAAPGLL_					0	0	0		ENSG00000136327|ENST00000258829|NKX2-8	ENSG00000136327|ENST00000258829|NKX2-8	ENSG00000136327|ENST00000258829|NKX2-8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7996826171875	2	539.798206	1077.58186	0.34487	0.00018616	0.13375	7.2199E-05	0.47862	0.00025836	539.7983238203138	70.77	1.2604	70.477	70.2	71.46	-0.29292					89	32	5	0	0	0	0.98218	1	8495	8495		40.778	1.972	1	21345000			71319	5010	49945	50027	77919	77919					0.046171279889904326
SAEMMECLKQT	11	Unmodified	_SAEMMECLKQT_					0	0	0		THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant;ENSG00000144229|ENST00000409968|THSD7B	THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant	THSD7B|p.Q1420Tfs*26|1|0.21|ENSG00000144229|chr2:137656939-137656940|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.25830078125	3	424.187386	1269.54033	-0.41536	-0.00017619	0.78701	0.00033384	0.37165	0.00015765	424.1875358335424	41.923	0.31264	41.791	41.641	41.953	-0.13219					10	8	2	0	0	0	0.02477	1	3791	3791		22.562	4.0305	1	43275			71320	5722	49946	50028	77920	77920					-0.08365880148517135
SAEPLPLL	8	Unmodified	_SAEPLPLL_					0	0	0			REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7381896972656	2	420.247286	838.48002	-0.29148	-0.00012249	-2.4469	-0.0010283	-2.7384	-0.0011508	420.2462185916156	23.462	0.78565	23.462	23.165	23.951	0					36	18	3	0	0	0	0.027866	1	906	906		20.482	6.7065	1	619350	+		71321	27220	49947	50029	77921	77921					0.054318816372301626
SAEPLPLL	8	Unmodified	_SAEPLPLL_					0	0	0			REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.7381896972656	2	420.247286	838.48002	-0.5118	-0.00021508	-2.308	-0.00096993	-2.8198	-0.001185	420.2463374929487	23.426	0.87427	23.366	23.069	23.943	-0.060862					43	20	4	0	0	0	0.027866	1	896	896		44.531	22.829	1	572760	+		71322	27220	49947	50029	77922	77922					0.054318816372301626
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.27142333984375	2	503.271824	1004.5291	-0.29543	-0.00014868	0.17219	8.6657E-05	-0.12324	-6.2024E-05	503.27187861774485	57.165	1.1063	57.165	56.497	57.603	0					70	30	3	0	0	0	0.51662	2	6401	6401;6415		58.246	17.674	1	9951800			71323	3505	49948	50030	77923;77924	77923					0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.2715759277344	2	503.271824	1004.5291	0.15375	7.738E-05	-0.23833	-0.00011994	-0.084572	-4.2563E-05	503.27164364531114	57.308	1.1969	57.143	56.458	57.655	-0.16531					78	32	3	0	0	0	0.51662	1	6422	6422		58.246	8.2217	1	8447400			71324	3505	49948	50030	77925	77925					0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.271484375	2	503.271824	1004.5291	-0.16158	-8.1319E-05	0.096169	4.8399E-05	-0.065412	-3.292E-05	503.2718359275579	56.94	1.1088	57.035	56.394	57.503	0.09531					73	30	3	0	0	0	0.31105	2	6328	6311;6328		74.165	14.025	1	9150900			71325	3505	49948	50030	77926;77927	77927					0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.271824	1004.5291	-0.532	-0.00026774	0.51962	0.00026151	-0.012379	-6.2299E-06	503.2716883744902	57.276	1.0488	57.109	56.676	57.725	-0.1672	-0.012289	0.00032742	NaN	74.165	91	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2536600			71326	3505	49948	50030							0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.271824	1004.5291	0.11416	5.7455E-05	-0.10292	-5.1798E-05	0.011241	5.6573E-06	503.27136858277044	57.305	1.0285	57.103	56.71	57.738	-0.20209	-0.018895	-0.0002992	NaN	74.165	91	27	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2563700			71327	3505	49948	50030							0.027011699261947797
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.271824	1004.5291	-0.66953	-0.00033696	0.63786	0.00032101	-0.031679	-1.5943E-05	503.2717644125366	57.408	1.011	57.174	56.729	57.74	-0.23363	0.052759	0.00044642	NaN	74.165	89	26	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2682000			71328	3505	49948	50030							0.027011699261947797
SAGASVPDI	9	Unmodified	_SAGASVPDI_					0	0	0			REV__ENSG00000078269|ENST00000355585|SYNJ2	REV__ENSG00000078269|ENST00000355585|SYNJ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.2530517578125	2	408.708525	815.402498	0.85998	0.00035148	0.048954	2.0008E-05	0.90894	0.00037149	408.7083988725111	41.164	0.46284	41.041	40.797	41.26	-0.12317					19	12	2	0	0	0	0.024354	1	3640	3640		16.473	0	1	101490	+		71329	20608	49949	50031	77928	77928					-0.01258756298955177
SAGPKEAPPW	10	Unmodified	_SAGPKEAPPW_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7673950195312	2	520.263999	1038.51345	-0.83575	-0.00043481	-3.3246	-0.0017297	-4.1603	-0.0021645	520.2621018374414	22.714	1.1494	22.714	22.291	23.441	0					100	25	6	0	0	0	1.0781	1	800	800		35.618	5.3006	1	5519400			71330	1605	49950	50032	77929	77929					-0.0042711659086762666
SAGPSRPGSP	10	Unmodified	_SAGPSRPGSP_					0	0	0		ENST00000563920.1_1_16:88943386-88945887:-|nuORF;ENST00000563856.1_1_16:88943386-88947362:-|nuORF;nc|ENSG00000129993|O75081-2|CBFA2T3;nc|ENSG00000129993|O75081-4|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3	ENST00000563920.1_1_16:88943386-88945887:-|nuORF	ENST00000563920.1_1_16:88943386-88945887:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.730323	911.446094	-0.30477	-0.0001392	4.0271	0.0018393	3.7223	0.0017001	456.7307012967606	23.186	0.24835	23.125	22.981	23.229	-0.06086					11	5	3	0	0	0	0.03519	1	865	865		65.465	0	1	61828			71331	4378	49951	50033	77930	77930					-0.013171468017958432
SAGRLRPP	8	Unmodified	_SAGRLRPP_					0	0	0			REV__ENST00000341084.6_1_8:101322099-101322513:-|nuORF	REV__ENST00000341084.6_1_8:101322099-101322513:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7222900390625	2	427.253769	852.492984	-0.82509	-0.00035252	0.51456	0.00021985	-0.31053	-0.00013267	427.2538982538626	32.718	0.52277	32.718	32.418	32.941	0					29	13	3	0	0	0	0.027866	1	2318	2318		12.207	3.3845	1	385990	+		71332	30628	49952	50034	77931	77931					0.0608375753998871
SAGRLRPP	8	Unmodified	_SAGRLRPP_					0	0	0			REV__ENST00000341084.6_1_8:101322099-101322513:-|nuORF	REV__ENST00000341084.6_1_8:101322099-101322513:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	427.253769	852.492984	0.53514	0.00022864	-0.91828	-0.00039234	-0.38314	-0.0001637	427.25299300877975	32.788	0.86733	32.595	32.118	32.985	-0.19261	-0.017827	-0.00080835	NaN	12.207	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124290	+		71333	30628	49952	50034							0.0608375753998871
SAGRLRPP	8	Unmodified	_SAGRLRPP_					0	0	0			REV__ENST00000341084.6_1_8:101322099-101322513:-|nuORF	REV__ENST00000341084.6_1_8:101322099-101322513:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.253769	852.492984	0.060987	2.6057E-05	-0.24899	-0.00010638	-0.188	-8.0323E-05	427.253461445223	32.71	0.52337	32.551	32.283	32.806	-0.15929	-0.062188	-0.00023643	NaN	12.207	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127620	+		71334	30628	49952	50034							0.0608375753998871
SAGRPPQTSL	10	Unmodified	_SAGRPPQTSL_					0	0	0			REV__ENST00000587089.6_1_19:55653231-55653306:-|nuORF	REV__ENST00000587089.6_1_19:55653231-55653306:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2739562988281	2	507.272355	1012.53016	-0.34359	-0.00017429	3.9369	0.0019971	3.5933	0.0018228	507.27420160272965	67.361	0.96463	67.073	66.707	67.671	-0.28834					68	23	4	0	0	0	0.99657	1	8005	8005		46.457	2.34	1	2942400	+		71335	35620	49953	50035	77932	77932					0.024393842950985345
SAHKTAQPNGD	11	Unmodified	_SAHKTAQPNGD_					0	0	0		ENSG00000242574|ENST00000418107|HLA-DMB;ENST00000498020.1_1_6:32904922-32905177:-|nuORF	ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.267578125	2	563.267801	1124.52105	0.1725	9.7165E-05	-0.78957	-0.00044474	-0.61706	-0.00034757	563.2674026963554	23.54	1.6335	23.338	23.014	24.648	-0.20193					85	37	5	0	0	0	0.79085	1	953	953		58.246	3.4699	1	6659700			71336	10799	49954	50036	77933	77933					-0.03623009061220728
SAHVQSLVSFW	11	Unmodified	_SAHVQSLVSFW_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.8822021484375	3	420.8839	1259.62987	-0.61859	-0.00026035	-2.6582	-0.0011188	-3.2768	-0.0013791	420.88273777482607	35.878	0.85552	35.673	35.387	36.242	-0.20518					56	23	3	0	0	0	1.0074	1	2755	2755		35.178	0	1	2276500	+		71337	24415	49955	50037	77934	77934					0.010442019090532995
SAIEGIKYI	9	Unmodified	_SAIEGIKYI_					0	0	0		ENSG00000138435|ENST00000348749|CHRNA1;nc|ENSG00000138435|P02708-1|CHRNA1;chr2:174757675-174757946|234|16.56|0.97|4.1|-|ENST00000261007|CHRNA1,CHRNA1	ENSG00000138435|ENST00000348749|CHRNA1	ENSG00000138435|ENST00000348749|CHRNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.285400390625	2	497.2844	992.554247	-0.80717	-0.00040139	0.8209	0.00040822	0.01373	6.8278E-06	497.2846807909162	35.795	0.65409	35.59	35.265	35.919	-0.20518					40	17	3	0	0	0	0.67687	1	2749	2749		47.657	1.6851	1	3454800			71338	372	49956	50038	77935	77935					0.05767224728754172
SAIERKSL	8	Unmodified	_SAIERKSL_					0	0	0		nc|ENSG00000135363|P25791-4|LMO2;nc|ENSG00000135363|P25791|LMO2;ENSG00000135363|ENST00000257818|LMO2	nc|ENSG00000135363|P25791-4|LMO2	nc|ENSG00000135363|P25791-4|LMO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2665710449219	2	452.266542	902.51853	-0.19022	-8.6028E-05	0.092713	4.1931E-05	-0.097502	-4.4097E-05	452.26649079022894	25.326	0.71686	25.155	24.825	25.542	-0.17078					30	16	2	0	0	0	0.50717	1	1181	1181		84.916	8.1414	1	1777500			71339	4884	49957	50039	77936	77936					0.06337187271753919
SAIHLSRSC	9	Unmodified	_SAIHLSRSC_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|141|1|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|141|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.24603271484375	2	487.247826	972.481099	-0.18925	-9.2212E-05	-3.3295	-0.0016223	-3.5188	-0.0017145	487.2460609978459	23.721	0.63199	23.541	23.281	23.913	-0.17989					33	14	3	0	0	0	0.51687	1	973	973		58.23	13.853	1	728260	+		71340	36251	49958	50040	77937	77937					-0.0062422726549584695
SAIHLSRSC	9	Unmodified	_SAIHLSRSC_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|141|1|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|141|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.247826	972.481099	0.052529	2.5594E-05	-3.4363	-0.0016743	-3.3838	-0.0016487	487.2459108664769	23.798	0.68787	23.596	23.279	23.967	-0.20193	0.044567	0.00040797	NaN	58.23	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676870	+		71341	36251	49958	50040							-0.0062422726549584695
SAIHLSRSC	9	Unmodified	_SAIHLSRSC_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|141|1|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|141|1|anti-sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	487.247826	972.481099	-0.18925	-9.2212E-05	-3.3295	-0.0016223	-3.5188	-0.0017145	487.2460609978459	23.721	0.63199	23.541	23.281	23.913	-0.17989	-0.010311	0.00051202	NaN	58.23	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728260	+		71342	36251	49958	50040							-0.0062422726549584695
SAITSESGI	9	Unmodified	_SAITSESGI_					0	0	0			REV__ENSG00000261272|ENST00000561890|MUC22	REV__ENSG00000261272|ENST00000561890|MUC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7206726074219	2	432.71909	863.423627	-0.18437	-7.9782E-05	3.6754	0.0015904	3.491	0.0015106	432.7204933344157	30.863	0.96854	30.622	30.326	31.295	-0.24109					52	23	3	0	0	0	0.83071	1	2004	2004		37.159	6.6555	1	1264200	+		71343	29112	49959	50041	77938	77938					-0.013547909900808008
SAKDLSIRSL	10	Unmodified	_SAKDLSIRSL_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;ENST00000555222.5_1_12:57492966-57496222:-|nuORF	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3170166015625	2	545.316763	1088.61897	-0.30487	-0.00016625	0.011579	6.3145E-06	-0.29329	-0.00015994	545.3166612201959	87.131	2.711	87.152	85.573	88.284	0.021263					207	64	4	0	0	0	1.0816	1	11000	11000		35.152	0.97948	1	3635800			71344	7622	49960	50042	77939	77939					0.07820799534761136
SAKKILLEI	9	Unmodified	_SAKKILLEI_					0	0	0		ENST00000453932.1_1_7:76099481-76100288:-|nuORF	ENST00000453932.1_1_7:76099481-76100288:-|nuORF	ENST00000453932.1_1_7:76099481-76100288:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.83087158203125	2	507.831517	1013.64848	0.058603	2.976E-05	3.6214	0.0018391	3.68	0.0018688	507.83321296556915	105.31	0.35592	105.31	105.02	105.38	-0.0016022					18	10	2	0	0	0	0.77768	1	13437	13437		40.778	6.6056	1	206210			71345	14559	49961	50043	77940	77940					0.14220363550907678
SAKKKLLR	8	Unmodified	_SAKKKLLR_					0	0	0		ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;ENSG00000164808|ENST00000297423|SPIDR;ENST00000521214.5_1_8:48191985-48612988:+|nuORF;ENST00000523814.5_1_8:48203675-48320543:+|nuORF	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2876892089844	2	472.324194	942.633835	-0.47706	-0.00022533	3.8935	0.001839	3.4164	0.0016137	472.32583803050414	94.33	0.33025	94.192	94.132	94.463	-0.13779					13	7	2	0	0	0	0.027866	1	11611	11611		16.473	4.9621	1	134560			71346	7323	49962	50044	77941	77941					0.16022336193418596
SAKLPVPR	8	Unmodified	_SAKLPVPR_					0	0	0		ENST00000540593.5_2_14:74353471-74358777:+|nuORF	ENST00000540593.5_2_14:74353471-74358777:+|nuORF	ENST00000540593.5_2_14:74353471-74358777:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.2518310546875	2	434.27417	866.533787	0.35397	0.00015372	3.3339	0.0014478	3.6879	0.0016016	434.2743983472379	79.302	0.3712	79.082	78.914	79.285	-0.21922					13	8	2	0	0	0	0.027866	1	9479	9479		20.947	1.587	1	59931			71347	16426	49963	50045	77942	77942					0.09518098859598467
SAKNGTPQDRH	11	Unmodified	_SAKNGTPQDRH_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.2012634277344	3	404.202292	1209.58505	1.4223	0.0005749	-4.0752	-0.0016472	-2.6529	-0.0010723	404.2006249559638	20.802	0.83678	20.607	20.236	21.073	-0.19577					49	16	4	0	0	0	0.96481	1	575	575		44.639	5.3866	1	1160800			71348	4228	49964	50046	77943	77943					-0.011362289042835982
SAKQFALVVI	10	Unmodified	_SAKQFALVVI_					0	0	0			REV__ENSG00000010610|ENST00000011653|CD4	REV__ENSG00000010610|ENST00000011653|CD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.32666015625	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	1.0816	1	12868	12868		35.152	2.3396	1	22988000	+		71349	19908	49965	50047	77944	77944					0.10939479408125408
SAKVRKQL	8	Unmodified	_SAKVRKQL_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS;ENST00000459924.1_1_6:74149899-74155344:-|nuORF	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.29864501953125	2	465.298176	928.581799	1.0286	0.00047862	-0.62445	-0.00029055	0.4042	0.00018807	465.29771167653286	18.134	0.44222	17.978	17.805	18.247	-0.15637					19	8	3	0	0	0	0.93437	1	270	270		47.657	8.4045	1	255330			71350	7278	49966	50048	77945	77945					0.1146517277966268
SAKVRKQL	8	Unmodified	_SAKVRKQL_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS;ENST00000459924.1_1_6:74149899-74155344:-|nuORF	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.2984924316406	2	465.298176	928.581799	0.081851	3.8085E-05	0.051214	2.383E-05	0.13306	6.1915E-05	465.2980810429249	18.193	0.49543	17.99	17.767	18.262	-0.20371					20	9	3	0	0	0	0.83003	1	262	262		56.721	8.8055	1	259160			71351	7278	49966	50048	77946	77946					0.1146517277966268
SAKVVPTKFV	10	Unmodified	_SAKVVPTKFV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3280029296875	2	538.329142	1074.64373	-0.12202	-6.5684E-05	-3.9102	-0.002105	-4.0322	-0.0021706	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	0.86389	2	12770	12734;12770		56.434	5.0983	1	22543000			71352	1054	49967	50049	77947;77948	77948					0.10939479408125408
SAKVVPTKFV	10	Unmodified	_SAKVVPTKFV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3274536132812	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	1.0122	2	12729	12729;12750		44.377	0.44669	1	22988000			71353	1054	49967	50049	77949;77950	77949					0.10939479408125408
SAKVVPTKFV	10	Unmodified	_SAKVVPTKFV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3262939453125	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	1.0344	2	12725	12645;12725		41.427	1.1092	1	22353000			71354	1054	49967	50049	77951;77952	77952					0.10939479408125408
SAKVVPTKFV	10	Unmodified	_SAKVVPTKFV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3271484375	2	538.329142	1074.64373	-0.74783	-0.00040258	-3.1387	-0.0016897	-3.8866	-0.0020923	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.0447	2	12388	12378;12388		40.058	4.4399	1	21993000			71355	1054	49967	50049	77953;77954	77954					0.10939479408125408
SALARTAR	8	Unmodified	_SALARTAR_					0	0	0			REV__ENST00000325643.5_1_9:90499938-90500478:+|nuORF	REV__ENST00000325643.5_1_9:90499938-90500478:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	422.2561950683594	2	423.251226	844.487899	-0.75819	-0.00032091	-4.258	-0.0018022	-5.0162	-0.0021231	423.24979948394963	21.688	0.3873	21.476	21.216	21.604	-0.2128					9	7	2	0	0	0	0.027866	1	688	688		18.324	0	1	23365	+		71356	30393	49968	50050	77955	77955					0.05943453677366506
SALKASVFITL	11	Unmodified	_SALKASVFITL_					0	0	0			REV__ENSG00000149100|ENST00000531120|EIF3M	REV__ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.3455200195312	2	575.347532	1148.68051	0.72586	0.00041762	-4.1243	-0.0023729	-3.3984	-0.0019553	575.345019698839	97.117	1.277	96.993	96.572	97.849	-0.12368					101	28	5	0	0	0	1.0183	1	12051	12051		32.751	1.2207	1	3498400	+		71357	24654	49969	50051	77956	77956					0.11211731234061517
SALLTHLIRQK	11	Unmodified	_SALLTHLIRQK_					0	0	0			REV__ENSG00000102900|ENST00000308159|NUP93	REV__ENSG00000102900|ENST00000308159|NUP93	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.2642822265625	3	427.266345	1278.7772	-0.029898	-1.2774E-05	-4.446	-0.0018996	-4.4759	-0.0019124	427.2646178767068	54.145	5.9552	53.998	53.675	59.63	-0.14723					470	165	6	0	0	0	1.0592	1	5979	5979		22.562	4.0305	1	50736000	+		71358	21337	49970	50052	77957	77957					0.14896718513841734
SALLTHLIRQK	11	Unmodified	_SALLTHLIRQK_					0	0	0			REV__ENSG00000102900|ENST00000308159|NUP93	REV__ENSG00000102900|ENST00000308159|NUP93	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.2647705078125	3	427.266345	1278.7772	-0.58513	-0.00025001	-3.9587	-0.0016914	-4.5439	-0.0019414	427.2647783278071	53.901	2.7621	53.765	53.393	56.155	-0.13616					276	78	6	0	0	0	1.0532	2	5736	5686;5736		24.232	3.3947	1	50487000	+		71359	21337	49970	50052	77958;77959	77959					0.14896718513841734
SALSRLKG	8	Unmodified	_SALSRLKG_					0	0	0		ENST00000230538.11_1_6:112462098-112462671:-|nuORF	REV__nc|ENSG00000165480|Q8IX90-3|SKA3	REV__nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.23870849609375	2	416.255977	830.497401	1.0667	0.00044401	-0.99589	-0.00041455	0.070774	2.946E-05	416.2554207307088	19.578	0.36874	19.578	19.366	19.735	0					13	7	2	0	0	0	0.027866	1	440	440		35.618	11.114	1	69153			71360	25890	49971	50053	77960	77960					0.07537221962900276
SALSSHRTGP	10	Unmodified	_SALSSHRTGP_					0	0	0		nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	nc|ENSG00000144560|Q14135-2|VGLL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7643127441406	2	506.762155	1011.50976	-0.17782	-9.0114E-05	4.0893	0.0020723	3.9115	0.0019822	506.76410062388567	49.405	0.90648	49.304	48.955	49.861	-0.1008					60	23	4	0	0	0	0.96822	1	4957	4957		49.536	0.094497	1	2114800			71361	5748	49972	50054	77961	77961					0.004462136353026835
SALVKFIEALS	11	Unmodified	_SALVKFIEALS_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3426513671875	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0183	1	11917	11917		32.751	1.1163	1	13724000	+		71362	28272	49973	50055	77962	77962					0.09415427371436635
SALVTINYI	9	Unmodified	_SALVTINYI_					0	0	0			REV__nc|ENSG00000134755|Q02487-2|DSC2	REV__nc|ENSG00000134755|Q02487-2|DSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.28582763671875	2	497.2844	992.554247	-0.16826	-8.3675E-05	0.026491	1.3174E-05	-0.14177	-7.0501E-05	497.28431439566583	35.781	0.86925	35.568	35.115	35.985	-0.21246					62	23	4	0	0	0	0.53979	1	2766	2766		56.721	9.0637	1	3366600	+		71363	23475	49974	50056	77963	77963					0.05767224728754172
SANPPRLP	8	Unmodified	_SANPPRLP_					0	0	0		ENSG00000241852|ENST00000289989|C8orf58;nc|nan|Q8NAV2-2|C8orf58;ENST00000495957.1_1_8:22459568-22459924:+|nuORF	ENSG00000241852|ENST00000289989|C8orf58	ENSG00000241852|ENST00000289989|C8orf58	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2386474609375	2	426.240327	850.466101	0.013817	5.8894E-06	-4.4399	-0.0018925	-4.4261	-0.0018866	426.23842914859904	58.007	0.29911	57.829	57.675	57.974	-0.17775					14	7	3	0	0	0	1.0574	1	6358	6358		20.482	4.8456	1	1904600			71364	10786	49975	50057	77964	77964					0.0348864892880556
SAPARLGSGL	10	Unmodified	_SAPARLGSGL_					0	0	0			REV__ENST00000541300.5_1_7:102715365-102715548:+|nuORF	REV__ENST00000541300.5_1_7:102715365-102715548:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7643737792969	2	464.764166	927.513779	1.0694	0.00049703	-1.9403	-0.00090176	-0.87083	-0.00040473	464.76331159374956	33.385	0.82092	33.441	33.07	33.89	0.056568					61	21	4	0	0	0	1.0122	1	2339	2339		44.377	0.26039	1	15221000	+		71365	34769	49976	50058	77965	77965					0.04712303129008433
SAPGARGRGS	10	Unmodified	_SAPGARGRGS_					0	0	0		ENST00000409565.5_1_2:228190001-228195343:+|nuORF;ENST00000452930.5_1_2:228190001-228190154:+|nuORF;ENST00000470090.5_1_2:228190001-228205097:+|nuORF	ENST00000409565.5_1_2:228190001-228195343:+|nuORF	ENST00000409565.5_1_2:228190001-228195343:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2455749511719	2	458.24139	914.468226	-0.92962	-0.00042599	-2.7073	-0.0012406	-3.6369	-0.0016666	458.24007000454134	25.088	1.0524	25.054	24.546	25.598	-0.034397					46	24	3	0	0	0	0.03519	1	1078	1078		47.657	36.146	1	381610			71366	13781	49977	50059	77966	77966					0.007570776666284473
SAPPGAPPPT	10	Unmodified	_SAPPGAPPPT_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	446.23187255859375	2	446.232168	890.449782	0.27475	0.0001226	-0.89263	-0.00039832	-0.61787	-0.00027572	446.2318420635589	101.24	1.993	101.24	100.76	102.76	-0.0054474					118	45	5	0	0	0	1.0393	1	12916	12916		40.778	5.1599	1	6672200			71367	3555	49978	50060	77967	77967					0.0001752297204120623
SAPPSQPVPGE	11	Unmodified	_SAPPSQPVPGE_					0	0	0			REV__ENSG00000059915|ENST00000020673|PSD	REV__ENSG00000059915|ENST00000020673|PSD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2637939453125	2	533.264196	1064.51384	-0.60349	-0.00032182	-0.27367	-0.00014594	-0.87717	-0.00046776	533.263944344723	30.876	0.74673	30.635	30.326	31.073	-0.24109					32	17	3	0	0	0	0.96309	1	2006	2006		45.022	0	1	896070	+		71368	20247	49979	50061	77968	77968					-0.015837416616705013
SAPRRQLAVLP	11	Unmodified	_SAPRRQLAVLP_					0	0	0			REV__ENST00000593099.5_1_17:33329935-33330064:+|nuORF	REV__ENST00000593099.5_1_17:33329935-33330064:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.3618774414062	2	604.367121	1206.71969	-0.25622	-0.00015485	-0.39433	-0.00023832	-0.65055	-0.00039317	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	1.0371	1	12944	12944		25.574	0	1	4809400	+		71369	35760	49980	50062	77969	77969					0.12459876308275852
SAPSLLTVETC	11	Unmodified	_SAPSLLTVETC_					0	0	0		ENST00000469676.1_1_2:74362651-74373491:-|nuORF	ENST00000469676.1_1_2:74362651-74373491:-|nuORF	ENST00000469676.1_1_2:74362651-74373491:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.7818603515625	2	560.781364	1119.54818	3.1299	0.0017552	1.131	0.00063425	4.2609	0.0023894	560.7820469490256	18.241	0.39958	17.999	17.875	18.274	-0.24256					13	7	2	0	0	0	1.0923	1	265	265		13.454	0.49486	1	31489			71370	14911	49981	50063	77970	77970					-0.006816615650677704
SAPSLLTVETC	11	Unmodified	_SAPSLLTVETC_					0	0	0		ENST00000469676.1_1_2:74362651-74373491:-|nuORF	ENST00000469676.1_1_2:74362651-74373491:-|nuORF	ENST00000469676.1_1_2:74362651-74373491:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.781364	1119.54818	0.82497	0.00046263	4.5312	0.002541	5.3562	0.0030036	560.783537978765	18.218	0.29338	18.062	17.904	18.197	-0.15637	0.021432	0.0021655	NaN	13.454	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29576			71371	14911	49981	50063							-0.006816615650677704
SAPSLLTVETC	11	Unmodified	_SAPSLLTVETC_					0	0	0		ENST00000469676.1_1_2:74362651-74373491:-|nuORF	ENST00000469676.1_1_2:74362651-74373491:-|nuORF	ENST00000469676.1_1_2:74362651-74373491:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	560.781364	1119.54818	0.075293	4.2223E-05	4.8038	0.0026939	4.8791	0.0027361	560.7835082286	18.265	0.34722	18.061	17.915	18.262	-0.20371	0.02033	0.0024712	NaN	13.454	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34877			71372	14911	49981	50063							-0.006816615650677704
SAPSRPVR	8	Unmodified	_SAPSRPVR_					0	0	0			REV__ENST00000331434.6_1_8:146277861-146278117:+|nuORF	REV__ENST00000331434.6_1_8:146277861-146278117:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2518005371094	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0106	1	9439	9439		35.618	2.1027	1	2257900	+		71373	30475	49982	50064	77971	77971					0.04839453677379879
SAQLAKGR	8	Unmodified	_SAQLAKGR_					0	0	0			REV__ENSG00000206262|ENST00000383165|FOXL2NB	REV__ENSG00000206262|ENST00000383165|FOXL2NB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.1986389160156	2	415.745776	829.477	-0.25727	-0.00010696	0.61451	0.00025548	0.35725	0.00014852	415.74593884095674	20.712	0.49649	20.489	20.315	20.812	-0.22344					14	9	2	0	0	0	0.027866	1	576	576		12.207	0	1	30457	+		71374	28705	49983	50065	77972	77972					0.05544051303093056
SAQRPKASL	9	Unmodified	_SAQRPKASL_					0	0	0		HNRNPL|p.A247P|1|0.23|ENSG00000104824|chr19:38844076-38844076|C/G|missense_variant	HNRNPL|p.A247P|1|0.23|ENSG00000104824|chr19:38844076-38844076|C/G|missense_variant	HNRNPL|p.A247P|1|0.23|ENSG00000104824|chr19:38844076-38844076|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2773132324219	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.87816	1	10450	10450		33.922	1.1092	1	4947400			71375	17742	49984	50066	77973	77973					0.06031992020314192
SARGVQSVL	9	Unmodified	_SARGVQSVL_					0	0	0			REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.7638854980469	2	458.764166	915.513779	0.28955	0.00013283	-0.89355	-0.00040993	-0.604	-0.00027709	458.7638082986722	23.619	1.4149	23.417	23.061	24.476	-0.20193					93	32	5	0	0	0	0.16468	4	941	931;941;952;976		96.19	10.941	1	8728400	+		71376	25701	49985	50067	77974;77975;77976;77977	77975					0.052643031289903774
SARGVQSVL	9	Unmodified	_SARGVQSVL_					0	0	0			REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.7640075683594	2	458.764166	915.513779	-0.34431	-0.00015796	-0.13701	-6.2854E-05	-0.48131	-0.00022081	458.7641575586641	23.516	1.097	23.337	23.067	24.164	-0.17989					60	25	3	0	0	0	0.16468	1	918	918		96.19	5.4138	1	9688700	+		71377	25701	49985	50067	77978	77978					0.052643031289903774
SARSRRRRWPR	11	Unmodified	_SARSRRRRWPR_					0	0	0			REV__ENST00000586271.1_1_17:76121323-76121878:-|nuORF	REV__ENST00000586271.1_1_17:76121323-76121878:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2914123535156	3	495.290769	1482.85048	0.46196	0.0002288	0.9805	0.00048563	1.4425	0.00071444	495.29122714340116	18.527	0.79027	18.371	18.099	18.889	-0.15637					43	15	4	0	0	0	1.0501	1	316	316		25.068	0.83596	1	257530	+		71378	35594	49986	50068	77979	77979					0.12836704799678955
SARVGSLSW	9	Unmodified	_SARVGSLSW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20;ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MSMS	OPSCC_40_ClassI_Rep-1	4	481.75616455078125	2	481.756341	961.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.525	1	52.4	51.9	52.9	-0.1242								0	0	0	0.05455	1	5461	5461		107.01	10.817	1				71379	3625	49987	50069	77980	77980					0.015840166119460264
SARVGSLSW	9	Unmodified	_SARVGSLSW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20;ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MSMS	OPSCC_40_ClassI_Rep-1	4	481.7562255859375	2	481.756341	961.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.646	1	52.519	52.019	53.019	-0.12705								0	0	0	0.084717	1	5479	5479		95.815	18.498	1				71380	3625	49987	50069	77981	77981					0.015840166119460264
SARVGSLSW	9	Unmodified	_SARVGSLSW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20;ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.75714111328125	2	481.756341	961.498129	0.1395	6.7205E-05	0.067162	3.2356E-05	0.20666	9.9561E-05	481.7561258344564	52.638	0.79466	52.449	52.147	52.942	-0.18982					42	19	3	0	0	0	0.071379	2	5460	5460;5470		120.87	35.953	1	1132900			71381	3625	49987	50069	77982;77983	77982					0.015840166119460264
SARVGSLSW	9	Unmodified	_SARVGSLSW_					0	0	0		ENSG00000117399|ENST00000310955|CDC20;ENST00000488829.1_1_9:89626569-89628063:+|nuORF	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	481.756341	961.498129	0.17044	8.2111E-05	0.041765	2.012E-05	0.2122	0.00010223	481.756103268464	52.764	0.67327	52.505	52.249	52.922	-0.25838	0.028285	-9.1919E-06	NaN	120.87	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1128100			71382	3625	49987	50069							0.015840166119460264
SARYKHPARNL	11	Unmodified	_SARYKHPARNL_					0	0	0		chr1:116666956-116667361|323|10.09|0.52|4.26|-|1|IGSF3,None|1	chr1:116666956-116667361|323|10.09|0.52|4.26|-|1|IGSF3,None|1	chr1:116666956-116667361|323|10.09|0.52|4.26|-|1|IGSF3,None|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.24554443359375	3	438.245944	1311.716	-0.29726	-0.00013027	2.3946	0.0010494	2.0974	0.00091917	438.2467666049744	27.959	2.6891	27.955	27.178	29.868	-0.0042019					182	67	4	0	0	0	0.97559	1	1547	1547		42.243	8.1561	1	1440200			71383	269	49988	50070	77984	77984					0.07261206534417397
SASCLIWKTTT	11	Unmodified	_SASCLIWKTTT_					0	0	0		ENST00000492560.6_1_7:139529050-139575514:+|nuORF;ENST00000448866.5_2_7:139529035-139611059:+|nuORF;ENST00000476637.5_1_7:139529080-139653256:+|nuORF	ENST00000492560.6_1_7:139529050-139575514:+|nuORF	ENST00000492560.6_1_7:139529050-139575514:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.2132873535156	3	404.209396	1209.60636	1.0975	0.00044363	2.5538	0.0010323	3.6514	0.0014759	404.5444567543809	56.835	0.37913	56.633	56.404	56.783	-0.20209					14	9	2	0	0	0	0.024745	1	6150	6150		31.722	4.972	1	208150			71384	15484	49989	50071	77985	77985					0.009940200802020627
SASEKWEI	8	Unmodified	_SASEKWEI_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.23419189453125	2	475.234907	948.455261	0.38595	0.00018342	-1.1124	-0.00052865	-0.72644	-0.00034523	475.2343641896196	105.18	0.59084	105.18	104.95	105.54	-0.0015945					37	19	3	0	0	0	0.99042	1	13419	13419		38.806	0	1	297650			71385	3822	49990	50072	77986	77986					-0.021027982361488284
SASFFFPP	8	Unmodified	_SASFFFPP_					0	0	0			REV__ENST00000234310.7_1_2:68479486-68479594:-|nuORF	REV__ENST00000234310.7_1_2:68479486-68479594:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.26214599609375	2	450.218529	898.422505	0.062534	2.8154E-05	-3.9	-0.0017558	-3.8375	-0.0017277	450.21661014134025	41.782	0.72694	41.805	41.358	42.085	0.023003					30	20	3	0	0	0	0.027866	1	3661	3661		31.955	0	1	150730	+		71386	29424	49991	50073	77987	77987					-0.03076960568330378
SASHIRLI	8	Unmodified	_SASHIRLI_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2081604003906	2	448.769252	895.52395	-0.23654	-0.00010615	0.41517	0.00018632	0.17863	8.0163E-05	448.769238887266	32.163	0.46616	32.175	31.984	32.45	0.011799					21	11	2	0	0	0	0.027866	1	2177	2177		10.866	0	1	199460	+		71387	26672	49992	50074	77988	77988					0.07200910854237463
SASKNKVSL	9	Unmodified	_SASKNKVSL_					0	0	0			REV__ZNF536|p.P406A|1|0.25|ENSG00000198597|chr19:30444778-30444778|C/G|missense_variant	REV__ZNF536|p.P406A|1|0.25|ENSG00000198597|chr19:30444778-30444778|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7529296875	2	467.271824	932.529095	-0.71066	-0.00033207	-1.2536	-0.00058576	-1.9642	-0.00091784	467.2717876818508	43.297	0.43476	43.297	43.113	43.548	0					21	11	2	0	0	0	0.024288	1	4085	4085		44.377	0	1	616110	+		71388	37808	49993	50075	77989	77989					0.06013169926200135
SASKPGLPN	9	Unmodified	_SASKPGLPN_					0	0	0			REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	REV__nc|ENSG00000089351|Q96CP6-2|GRAMD1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.24835205078125	2	435.737617	869.460681	-0.11024	-4.8037E-05	0.17765	7.7411E-05	0.067412	2.9374E-05	435.73765273891036	33.711	0.56373	33.48	33.232	33.796	-0.23107					40	13	4	0	0	0	0.024495	1	2467	2467		9.1829	0	1	723970	+		71389	20853	49994	50076	77990	77990					0.02072925346340071
SASKRQGRILS	11	Unmodified	_SASKRQGRILS_					0	0	0			REV__nc|nan|Q8NDD1-6|C1orf131	REV__nc|nan|Q8NDD1-6|C1orf131	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.5718688964844	3	401.570316	1201.68912	0.49211	0.00019762	3.3976	0.0013644	3.8897	0.001562	401.5715603293036	33.39	1.0448	33.159	32.67	33.714	-0.23107					80	25	5	0	0	0	0.97559	1	2376	2376		42.243	5.9249	1	1803600	+		71390	24269	49995	50077	77991	77991					0.09634097923253648
SASLHHVL	8	Unmodified	_SASLHHVL_					0	0	0		ENST00000519921.5_1_8:41467789-41467849:+|nuORF	ENST00000519921.5_1_8:41467789-41467849:+|nuORF	ENST00000519921.5_1_8:41467789-41467849:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.9156188964844	2	432.240327	862.466101	-0.51443	-0.00022236	0.65463	0.00028296	0.1402	6.0602E-05	432.24052563979683	32.812	0.56438	32.819	32.553	33.117	0.0066261					21	14	2	0	0	0	0.027866	1	2266	2266		25.45	0	1	133330			71391	15966	49996	50078	77992	77992					0.02936648928800878
SASLHHVL	8	Unmodified	_SASLHHVL_					0	0	0		ENST00000519921.5_1_8:41467789-41467849:+|nuORF	ENST00000519921.5_1_8:41467789-41467849:+|nuORF	ENST00000519921.5_1_8:41467789-41467849:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	432.240327	862.466101	0.10859	4.6936E-05	0.62952	0.0002721	0.7381	0.00031904	432.2410303016737	32.775	0.20457	32.541	32.42	32.625	-0.23389	-0.17283	0.00056908	NaN	25.45	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24404			71392	15966	49996	50078							0.02936648928800878
SASLLTLLTP	10	Unmodified	_SASLLTLLTP_					0	0	0			REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF	REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2943420410156	2	508.305332	1014.59611	1.6582	0.00084289	-1.5697	-0.00079787	0.088556	4.5013E-05	508.3045190764575	63.799	0.8261	63.845	63.546	64.372	0.045502					44	22	3	0	0	0	0.03519	1	7369	7369		36.447	0	1	1311900	+		71393	30738	49997	50079	77993	77993					0.08939780417290422
SASNVPSFDL	10	Unmodified	_SASNVPSFDL_					0	0	0			REV__nc|ENSG00000149554|O14757-2|CHEK1	REV__nc|ENSG00000149554|O14757-2|CHEK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8087768554688	2	518.750921	1035.48729	-0.6839	-0.00035477	-0.18378	-9.5336E-05	-0.86768	-0.00045011	518.750480498238	38.003	0.50807	37.781	37.577	38.085	-0.22148					22	14	2	0	0	0	0.03519	1	3084	3084		70.816	21.375	1	296230	+		71394	24687	49998	50080	77994	77994					-0.029034305530103666
SASPDATIRIW	11	Unmodified	_SASPDATIRIW_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.8193359375	2	608.81967	1215.62479	-1.3008	-0.00079194	1.0054	0.00061211	-0.29539	-0.00017984	608.8202908371906	64.471	0.94696	64.236	63.943	64.89	-0.2345					65	23	4	0	0	0	0.064447	2	7324	7324;7337		117.53	45.472	1	2428000			71395	3025	49999	50081	77995;77996	77995					0.025598980464110355
SASPDATIRIW	11	Unmodified	_SASPDATIRIW_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.8200073242188	2	608.81967	1215.62479	-0.41943	-0.00025536	0.080852	4.9224E-05	-0.33858	-0.00020613	608.8197093328666	64.461	0.94775	64.258	63.911	64.859	-0.20254					68	23	4	0	0	0	0.0098899	2	7326	7326;7338		140.11	67.233	1	2424600			71396	3025	49999	50081	77997;77998	77997					0.025598980464110355
SASPDATIRIW	11	Unmodified	_SASPDATIRIW_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.819580078125	2	608.81967	1215.62479	-0.77728	-0.00047322	0.45906	0.00027948	-0.31822	-0.00019374	608.8199430645976	64.505	0.90121	64.249	63.999	64.901	-0.25563					63	22	4	0	0	0	0.064447	2	7325	7325;7339		117.53	53.992	1	2675300			71397	3025	49999	50081	77999;78000	77999					0.025598980464110355
SASPLNDL	8	Unmodified	_SASPLNDL_					0	0	0			REV__ENSG00000113593|ENST00000261308|PPWD1	REV__ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	408.2532043457031	2	408.708525	815.402498	1.0182	0.00041614	0.043075	1.7605E-05	1.0613	0.00043375	408.7082988921562	41.035	0.42356	41.058	40.934	41.358	0.023006					16	11	2	0	0	0	0.027866	1	3596	3596		1.2052	0	1	115800	+		71398	22075	50000	50082	78001	78001					-0.01258756298955177
SASRATRRR	9	Unmodified	_SASRATRRR_					0	0	0			REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF	REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8093872070312	2	530.807762	1059.60097	1.03	0.00054673	2.1756	0.0011548	3.2056	0.0017016	530.8089811467206	17.637	1.0901	17.483	17.159	18.249	-0.15403					54	21	5	0	0	0	0.91321	1	221	221		31.53	3.6476	1	2530100	+		71399	35988	50001	50083	78002	78002					0.07355522123248193
SASRPVRP	8	Unmodified	_SASRPVRP_					0	0	0			REV__ENSG00000165970|ENST00000525748|SLC6A5	REV__ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2516784667969	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	0.99042	1	9745	9745		38.806	3.1879	1	1590300	+		71400	25951	50002	50084	78003	78003					0.04839453677379879
SASRVVKPR	9	Unmodified	_SASRVVKPR_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2902526855469	2	500.306532	998.598512	-0.51351	-0.00025691	2.3809	0.0011912	1.8674	0.00093429	500.30771076522154	86.244	1.2786	86.267	85.987	87.265	0.023666					39	29	3	0	0	0	0.024405	1	10812	10812		27.882	0	1	202900			71401	2842	50003	50085	78004	78004					0.09915673665614122
SASVSLRGKN	10	Unmodified	_SASVSLRGKN_					0	0	0		ENST00000454175.1_1_7:99102911-99103010:+|nuORF	ENST00000454175.1_1_7:99102911-99103010:+|nuORF	ENST00000454175.1_1_7:99102911-99103010:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8037109375	2	509.78563	1017.55671	-0.17981	-9.1666E-05	-1.7682	-0.00090142	-1.948	-0.00099308	509.7821429037768	86.05	0.68309	86.005	85.697	86.38	-0.045105					24	15	2	0	0	0	0.03519	1	10815	10815		56.721	10.749	1	98587			71402	14563	50004	50086	78005	78005					0.048630731864250265
SASWALSAW	9	Unmodified	_SASWALSAW_					0	0	0		ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2197570800781	2	489.737617	977.460681	-0.58078	-0.00028443	-3.7686	-0.0018456	-4.3493	-0.00213	489.7355561885774	29.621	0.67346	29.448	29.156	29.829	-0.17258					24	15	2	0	0	0	0.022924	1	1781	1781		63.306	24.053	1	319610			71403	10880	50005	50087	78006	78006					-0.028950746536793304
SASWDSTVKV	10	Unmodified	_SASWDSTVKV_					0	0	0		ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF;ENST00000517612.5_1_8:59498999-59503485:-|nuORF	ENSG00000035681|ENST00000038176|NSMAF	ENSG00000035681|ENST00000038176|NSMAF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2837524414062	2	540.272021	1078.52949	-0.44393	-0.00023985	0.75579	0.00040833	0.31185	0.00016848	540.2723786532989	41.847	0.47203	41.724	41.565	42.037	-0.12299					19	12	2	0	0	0	0.03519	1	3709	3709		36.447	16.45	1	262850			71404	1033	50006	50088	78007	78007					-0.006634551446268233
SASYFPMA	8	Unmodified	_SASYFPMA_					0	0	0			REV__nc|ENSG00000164209|Q96AG3-2|SLC25A46	REV__nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.2192077636719	2	437.194196	872.37384	-0.50968	-0.00022283	-3.3745	-0.0014753	-3.8842	-0.0016981	437.1926557425103	44.651	0.20528	44.651	44.587	44.793	0					8	5	2	0	0	0	0.027866	1	4279	4279		8.2313	0	1	60995	+		71405	25716	50007	50089	78008	78008					-0.0674519719974569
SATAVPSAASM	11	Unmodified	_SATAVPSAASM_					0	0	0		nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5;ENSG00000152359|ENST00000428202|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	nc|ENSG00000152359|Q8NA72-2|POC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.7411804199219	2	496.739499	991.464446	-0.23587	-0.00011717	3.6894	0.0018327	3.4535	0.0017155	496.7412398137278	26.113	1.029	25.945	25.737	26.766	-0.16816					84	27	4	0	0	0	0.98904	1	1362	1362		39.253	0	1	6896200			71406	6268	50008	50090	78009	78009					-0.03162772942118863
SATDAAIRVW	10	Unmodified	_SATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2883911132812	2	545.288005	1088.56146	-0.29168	-0.00015905	-0.37277	-0.00020327	-0.66445	-0.00036232	545.2880614181186	58.485	0.76923	58.297	58.05	58.819	-0.18795					59	18	5	0	0	0	0.1587	3	6427	6414;6427;6439		126.24	62.709	1	3884200			71407	9269	50009	50091	78010;78011;78012	78011					0.020719573291671622
SATDAAIRVW	10	Unmodified	_SATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2886352539062	2	545.288005	1088.56146	-0.12576	-6.8574E-05	0.44712	0.00024381	0.32136	0.00017524	545.2882008641868	58.437	0.76143	58.246	58.02	58.782	-0.19017					38	18	4	0	0	0	0.1587	3	6426	6415;6426;6437		126.24	57.396	1	3472800			71408	9269	50009	50091	78013;78014;78015	78014					0.020719573291671622
SATDAAIRVW	10	Unmodified	_SATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2887573242188	2	545.288005	1088.56146	0.13202	7.1988E-05	-0.28397	-0.00015485	-0.15195	-8.2858E-05	545.2878500079141	58.565	0.76796	58.324	58.086	58.854	-0.24165					43	18	4	0	0	0	0.01976	3	6427	6415;6427;6439		163.15	88.986	1	4129900			71409	9269	50009	50091	78016;78017;78018	78017					0.020719573291671622
SATIPPILGL	10	Unmodified	_SATIPPILGL_					0	0	0			REV__ENST00000311601.5_1_5:171764958-171765231:-|nuORF	REV__ENST00000311601.5_1_5:171764958-171765231:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.3022155761719	2	491.302593	980.590633	0.24764	0.00012166	-0.17553	-8.6236E-05	0.07211	3.5428E-05	491.3024242683746	95.458	1.0687	95.462	95.009	96.078	0.0041199					59	24	3	0	0	0	1.0004	1	12074	12074		45.952	6.6991	1	1241700	+		71410	30210	50010	50092	78019	78019					0.09956101625471092
SATSSSQRDW	10	Unmodified	_SATSSSQRDW_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7514038085938	2	562.751984	1123.48942	-1.1811	-0.00066467	1.1072	0.00062308	-0.073903	-4.1589E-05	562.7525354271609	29.191	0.69212	28.945	28.665	29.357	-0.24524					34	15	3	0	0	0	0.22838	1	1770	1770		117.53	62.803	1	735760			71411	362	50011	50093	78020	78020					-0.06739001815185475
SATSSSQRDW	10	Unmodified	_SATSSSQRDW_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.7515258789062	2	562.751984	1123.48942	-0.4141	-0.00023303	0.48673	0.00027391	0.072636	4.0876E-05	562.7521066825198	29.04	0.77475	28.868	28.55	29.325	-0.17258					40	17	3	0	0	0	0.44183	1	1747	1747		94.409	41.472	1	750400			71412	362	50011	50093	78021	78021					-0.06739001815185475
SATSSSQRDW	10	Unmodified	_SATSSSQRDW_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	562.751984	1123.48942	-0.58451	-0.00032893	0.89977	0.00050635	0.31527	0.00017742	562.7522093476032	28.828	0.55615	28.678	28.444	29	-0.14952	-0.15205	-0.00010346	NaN	117.53	39	12	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897660			71413	362	50011	50093							-0.06739001815185475
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.2877502441406	2	511.287474	1020.5604	0.25051	0.00012809	-0.055543	-2.8398E-05	0.19497	9.9687E-05	511.287346412143	71.524	1.5835	71.524	70.909	72.493	0					84	40	3	0	0	0	0.015752	4	8684	8657;8668;8684;8696		158.07	56.474	1	6909700			71414	7291	50012	50094	78022;78023;78024;78025	78024					0.050937429602981865
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.2885437011719	2	511.287474	1020.5604	0.36978	0.00018906	-0.077564	-3.9657E-05	0.29222	0.00014941	511.28739504615424	71.883	1.5341	71.594	70.883	72.418	-0.28858					84	39	3	0	0	0	0.025498	5	8678	8665;8678;8690;8702;8715		145.16	54.786	1	7761200			71415	7291	50012	50094	78026;78027;78028;78029;78030	78027					0.050937429602981865
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2880554199219	2	511.287474	1020.5604	0.0011363	5.8096E-07	0.22424	0.00011465	0.22538	0.00011523	511.28751665168875	71.625	1.4352	71.635	70.937	72.372	0.010735					84	37	3	0	0	0	0.041068	5	8602	8590;8602;8613;8625;8638		132.76	42.388	1	7857800			71416	7291	50012	50094	78031;78032;78033;78034;78035	78032					0.050937429602981865
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2874450683594	2	511.287474	1020.5604	0.19047	9.7387E-05	-0.14926	-7.6317E-05	0.041209	2.107E-05	511.2872969814073	71.828	1.5719	71.552	71.056	72.628	-0.27509					81	37	5	0	0	0	0.034407	5	8409	8373;8384;8397;8409;8424		138.06	53.045	1	8011400			71417	7291	50012	50094	78036;78037;78038;78039;78040	78039					0.050937429602981865
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2875671386719	2	511.287474	1020.5604	0.091879	4.6976E-05	-0.077591	-3.9671E-05	0.014288	7.3051E-06	511.28737147495923	71.735	1.5246	71.473	71.159	72.684	-0.26199					87	36	5	0	0	0	0.041068	4	8394	8383;8394;8412;8424		132.76	42.388	1	7257200			71418	7291	50012	50094	78041;78042;78043;78044	78042					0.050937429602981865
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2873840332031	2	511.287474	1020.5604	0.25671	0.00013125	-0.39852	-0.00020376	-0.14181	-7.2507E-05	511.2872400909541	71.684	1.565	71.478	71.094	72.659	-0.20614					81	37	5	0	0	0	0.025498	5	8368	8357;8368;8380;8392;8407		145.16	59.796	1	8190600			71419	7291	50012	50094	78045;78046;78047;78048;78049	78046					0.050937429602981865
SAVLLTLVCV	10	Unmodified	_SAVLLTLVCV_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.30596923828125	2	509.304278	1016.594	0.26627	0.00013561	3.1542	0.0016064	3.4204	0.001742	509.30576152941245	91.807	1.4459	91.816	91.442	92.888	0.0094147					101	34	5	0	0	0	1.0271	2	11554	11554;11566		42.396	9.5837	1	3719700	+		71420	25554	50013	50095	78050;78051	78050					0.08637028407827074
SAVLMGLLEL	10	Unmodified	_SAVLMGLLEL_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3031005859375	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.941	3	10579	10496;10579;10591		51.335	1.8939	1	14072000			71421	1957	50014	50096	78052;78053;78054	78053					0.06840724545213561
SAVRLRPT	8	Unmodified	_SAVRLRPT_					0	0	0		chr17:75736406-75736565|421|22.88|0.94|4.6|+|1|None,ITGB4|1	chr17:75736406-75736565|421|22.88|0.94|4.6|+|1|None,ITGB4|1	chr17:75736406-75736565|421|22.88|0.94|4.6|+|1|None,ITGB4|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2743835449219	2	450.274701	898.534849	-1.3767	-0.00061991	0.3574	0.00016093	-1.0193	-0.00045898	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0338	1	11488	11488		31.955	0	1	56225000			71422	357	50015	50097	78055	78055					0.08152313228526964
SAWSKPQSVPL	11	Unmodified	_SAWSKPQSVPL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	600.324951171875	2	600.324588	1198.63462	-0.38663	-0.0002321	-0.96279	-0.00057799	-1.3494	-0.00081009	600.3238839559077	109.82	0.90476	109.7	109.55	110.45	-0.12523					80	37	4	0	0	0	0.98542	1	13519	13519		40.058	2.2467	1	2481200	+		71423	21363	50016	50098	78056	78056					0.04325086051812832
SAWSKPQSVPL	11	Unmodified	_SAWSKPQSVPL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	600.324588	1198.63462	-0.42835	-0.00025715	-1.0049	-0.00060329	-1.4333	-0.00086044	600.3238835780169	109.69	0.30039	109.68	109.53	109.83	-0.009491	-0.073526	-0.00035249	NaN	40.058	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1788900	+		71424	21363	50016	50098							0.04325086051812832
SAWSKPQSVPL	11	Unmodified	_SAWSKPQSVPL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	600.324588	1198.63462	-1.0245	-0.00061502	-0.49228	-0.00029553	-1.5168	-0.00091055	600.3241308708584	109.72	0.46326	109.73	109.54	110	0.0059204	-0.02841	0.00026303	NaN	40.058	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2279100	+		71425	21363	50016	50098							0.04325086051812832
SAWSKPQSVPL	11	Unmodified	_SAWSKPQSVPL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	600.324588	1198.63462	-0.38663	-0.0002321	-0.96279	-0.00057799	-1.3494	-0.00081009	600.3238839559077	109.82	0.90476	109.7	109.55	110.45	-0.12523	-0.059691	-0.00030189	NaN	40.058	80	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2481200	+		71426	21363	50016	50098							0.04325086051812832
SAWSKPQSVPL	11	Unmodified	_SAWSKPQSVPL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	600.324588	1198.63462	-1.731	-0.0010392	-0.067264	-4.038E-05	-1.7983	-0.0010795	600.3244337930636	109.85	0.56841	109.71	109.54	110.11	-0.13983	-0.050443	0.00077333	NaN	40.058	64	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2477200	+		71427	21363	50016	50098							0.04325086051812832
SAWSKPQSVPL	11	Unmodified	_SAWSKPQSVPL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	600.324588	1198.63462	0.45213	0.00027142	-1.4377	-0.00086306	-0.98553	-0.00059164	600.3239076051839	110.19	0.10304	110.05	109.99	110.09	-0.14888	0.28727	-0.00087203	NaN	40.058	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38241	+		71428	21363	50016	50098							0.04325086051812832
SCALNAVEV	9	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))ALNAVEV_	SC(1)ALNAVEV		SC(88)ALNAVEV		0	1	0			REV__nc|ENSG00000066032|P26232-3|CTNNA2;REV__ENSG00000183230|ENST00000433211|CTNNA3	REV__nc|ENSG00000066032|P26232-3|CTNNA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2816467285156	2	481.734217	961.453881	-0.26035	-0.00012542	0.70473	0.00033949	0.44438	0.00021407	481.73437683272647	46.27	0.54836	46.321	46.031	46.579	0.051399					34	15	3	0	0	0	0.023274	1	4501	4501		87.696	23.489	1	821730	+		71429	20327;27553	50017	50099	78057	78057	260				-0.028387555965423417
SCATKRTK	8	Unmodified	_SCATKRTK_					0	0	0			REV__ENST00000335979.6_1_3:97483765-97486940:+|nuORF	REV__ENST00000335979.6_1_3:97483765-97486940:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	447.743408203125	2	447.744919	893.475285	0.48233	0.00021596	-3.8793	-0.0017369	-3.397	-0.001521	447.7429288520692	22.174	0.74376	21.985	21.676	22.42	-0.18894					36	15	4	0	0	0	1.0009	1	758	758		37.159	1.9584	1	516300	+		71430	30538	50018	50100	78058	78058					0.024286742228241565
SCCCSCYS	8	Unmodified	_SCCCSCYS_					0	0	0			REV__ENST00000463900.5_1_2:74756401-74756618:-|nuORF	REV__ENST00000463900.5_1_2:74756401-74756618:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2621154785156	2	428.110635	854.206716	-0.52084	-0.00022298	2.8979	0.0012406	2.3771	0.0010177	428.1129255767012	90.181	0.28078	90.026	89.781	90.062	-0.1552					14	6	3	0	0	0	0.027866	1	11023	11023		8.8223	7.4947	1	31689	+		71431	32950	50019	50101	78059	78059					-0.2262187240281719
SCFLARLFL	9	Unmodified	_SCFLARLFL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|248|2|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|248|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2951049804688	2	535.296788	1068.57902	-0.35562	-0.00019036	0.4422	0.00023671	0.086588	4.635E-05	535.2968901723351	79.648	1.2514	79.498	79.195	80.446	-0.15051					89	29	5	0	0	0	0.6504	1	9561	9561		49.442	2.6751	1	4361500	+		71432	19333	50020	50102	78060	78060					0.047475813304799885
SCFLPRLFL	9	Unmodified	_SCFLPRLFL_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|203|1|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|203|1|anti-sense	MSMS	OPSCC_40_ClassI_Rep-3	6	548.3080444335938	2	548.304613	1094.59467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.56	1	101.39	100.89	101.89	-0.17178								0	0	0	0.21285	1	12595	12595		74.255	7.8258	1		+		71433	36267	50021	50103	78061	78061					0.05115867847507616
SCGNRGVQQPR	11	Unmodified	_SCGNRGVQQPR_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-5|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-6|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.23052978515625	3	401.200006	1200.57819	0.92485	0.00037105	4.2501	0.0017051	5.175	0.0020762	401.2016926559777	22.364	0.46748	22.364	22.152	22.619	0					25	9	4	0	0	0	0.024756	1	756	756		20.315	6.229	1	97915			71434	8786	50022	50104	78062	78062					-0.014078650565124917
SCGRPGIAVA	10	Unmodified	_SCGRPGIAVA_					0	0	0			REV__nc|ENSG00000064201|Q96QS1-2|TSPAN32	REV__nc|ENSG00000064201|Q96QS1-2|TSPAN32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.76104736328125	2	465.744919	929.475285	0.41884	0.00019507	1.0496	0.00048887	1.4685	0.00068394	465.7459838231833	86.565	0.38938	86.589	86.332	86.722	0.023666					13	8	2	0	0	0	0.03519	1	10768	10768		56.721	12.604	1	25484	+		71435	20279	50023	50105	78063	78063					0.007726742228214789
SCHLQKKQLRL	11	Unmodified	_SCHLQKKQLRL_					0	0	0		ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9328308105469	3	451.930968	1352.77107	-0.033264	-1.5033E-05	3.7241	0.001683	3.6908	0.001668	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0563	2	12280	12255;12280		23.378	2.5408	1	1141700			71436	9770	50024	50106	78064;78065	78065					0.1087987701066595
SCILLYLTH	9	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))ILLYLTH_	SC(1)ILLYLTH		SC(82)ILLYLTH		0	1	0			REV__ENST00000397728.7_1_21:47609640-47609970:-|nuORF	REV__ENST00000397728.7_1_21:47609640-47609970:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.25341796875	2	560.296985	1118.57942	0.31301	0.00017538	0.25205	0.00014123	0.56506	0.0003166	560.2968558664732	68.906	1.2103	68.663	67.747	68.958	-0.24278					46	29	2	0	0	0	0.022484	1	7871	7871		82.305	24.852	1	227190	+		71437	31782	50025	50107	78066	78066	419				0.024869562596450123
SCINKLRW	8	Unmodified	_SCINKLRW_					0	0	0			REV__ENST00000484556.1_1_6:30866836-30867070:+|nuORF	REV__ENST00000484556.1_1_6:30866836-30867070:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.63482666015625	2	510.276386	1018.53822	-0.16775	-8.5597E-05	-2.8818	-0.0014705	-3.0495	-0.0015561	510.2749549461503	102.12	0.25858	102.13	101.98	102.24	0.0073471					7	5	2	0	0	0	0.027866	1	13026	13026		33.516	13.519	1	26131	+		71438	33542	50026	50108	78067	78067					0.029692400108501715
SCKKKKKK	8	Unmodified	_SCKKKKKK_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|58|3|sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|58|3|sense	L1PB1_dup5905|chr7:93807211-93809400:+|13.166498912489203|0.2056128638309657|6.0|510.0|58|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2699279785156	2	489.318054	976.621556	-1.1821	-0.00057843	1.8314	0.00089615	0.64931	0.00031772	489.31891231313926	39.164	0.35562	39.188	38.993	39.349	0.023727					14	9	2	0	0	0	0.027866	1	3268	3268		4.3163	0	1	171920			71439	17891	50027	50109	78068	78068					0.13230976458726218
SCLALLASALL	11	Unmodified	_SCLALLASALL_					0	0	0			REV__ENSG00000204439|ENST00000375911|C6orf47	REV__ENSG00000204439|ENST00000375911|C6orf47	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.8133544921875	2	537.81501	1073.61547	0.048046	2.584E-05	-3.8686	-0.0020806	-3.8205	-0.0020547	537.8127813179169	71.647	0.69003	71.359	70.998	71.688	-0.28858					58	17	5	0	0	0	0.48498	1	8644	8644		77.318	11.852	1	3575700	+		71440	28605	50028	50110	78069	78069					0.08160413436553426
SCLMPLTI	8	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))LMPLTI_	SC(1)LMPLTI		SC(74)LMPLTI		0	1	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.25567626953125	2	467.740457	933.46636	-0.20097	-9.4002E-05	2.2058	0.0010317	2.0048	0.00093772	467.7409220815382	76.504	0.44032	76.276	76.003	76.444	-0.22844					13	10	2	0	0	0	0.027866	1	9358	9358		73.975	20.623	1	87323	+		71441	28147	50029	50111	78070	78070	367				-0.0030343545786308823
SCLMTFLK	8	Unmodified	_SCLMTFLK_					0	0	0		ENST00000310169.2_1_4:40337858-40337948:+|nuORF	ENST00000310169.2_1_4:40337858-40337948:+|nuORF	ENST00000310169.2_1_4:40337858-40337948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7878112792969	2	471.742999	941.471446	-0.38938	-0.00018369	-3.4179	-0.0016124	-3.8073	-0.0017961	471.74124716108	23.802	0.47286	23.741	23.557	24.03	-0.060862					30	10	4	0	0	0	0.027866	1	961	961		24.203	0	1	202350			71442	12058	50030	50112	78071	78071					-0.0016313159526362142
SCLPGLLFIL	10	Unmodified	_SCLPGLLFIL_					0	0	0			REV__ENST00000532904.5_1_11:62444872-62445073:-|nuORF	REV__ENST00000532904.5_1_11:62444872-62445073:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3108520507812	2	538.314646	1074.61474	-0.40841	-0.00021986	-2.2997	-0.0012379	-2.7081	-0.0014578	538.3131669701199	106.49	0.3913	106.49	106.33	106.72	-0.0013123					21	12	3	0	0	0	0.84306	1	13643	13643		57.811	5.5121	1	269770	+		71443	34590	50031	50113	78072	78072					0.08041618787501648
SCLTSILSHP	10	Unmodified	_SCLTSILSHP_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2730712890625	2	529.270967	1056.52738	0.15265	8.0793E-05	-2.9852	-0.00158	-2.8326	-0.0014992	529.2688346938374	92.237	0.20287	92.095	92.008	92.211	-0.14131					8	4	2	0	0	0	0.03519	1	11302	11302		51.335	15.717	1	62904			71444	37917	50032	50114	78073	78073					0.0013779284593056218
SCLVDHRGNI	10	Unmodified	_SCLVDHRGNI_					0	0	0		ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	ENSG00000090863|ENST00000422840|GLG1	ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.72802734375	2	557.277115	1112.53968	-0.2027	-0.00011296	2.207	0.0012299	2.0043	0.0011169	557.278159712243	57.021	0.78635	57.021	56.745	57.532	0					49	21	3	0	0	0	0.03519	1	6475	6475		51.193	8.3284	1	1782800			71445	1942	50033	50115	78074	78074					-0.012091706910496214
SCNGLETPKL	10	Unmodified	_SCNGLETPKL_					0	0	0			REV__ENST00000599999.5_1_19:4007758-4028181:+|nuORF	REV__ENST00000599999.5_1_19:4007758-4028181:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2703857421875	2	531.268424	1060.5223	1.1525	0.00061231	-0.21241	-0.00011285	0.94014	0.00049947	531.2681518898328	74.402	0.75102	74.402	74.084	74.835	0					61	17	5	0	0	0	0.86389	1	9110	9110		56.434	1.6575	1	1260200	+		71446	35835	50034	50116	78075	78075					-0.005545110167076928
SCPLQETH	8	Carbamidomethyl (C)	_SC(Carbamidomethyl (C))PLQETH_	SC(1)PLQETH		SC(48)PLQETH		0	1	0			REV__ENST00000555737.5_1_15:91500194-91503934:+|nuORF	REV__ENST00000555737.5_1_15:91500194-91503934:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.21502685546875	2	486.216192	970.41783	0.28892	0.00014048	-4.0685	-0.0019782	-3.7796	-0.0018377	486.2144773560208	97.787	3.7885	97.785	95.99	99.778	-0.0020752					163	87	3	0	0	0	0.93437	1	12374	12374		47.657	8.8512	1	279470	+		71447	35014	50035	50117	78076	78076	456				-0.06856212773413972
SCQSCSQWAL	10	Unmodified	_SCQSCSQWAL_					0	0	0			REV__ENST00000570164.5_1_16:31500917-31501493:-|nuORF	REV__ENST00000570164.5_1_16:31500917-31501493:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.7283935546875	2	556.728609	1111.44266	-0.25069	-0.00013957	0.4485	0.00024969	0.19781	0.00011013	556.7288757113257	57.388	1.8412	57.484	56.945	58.786	0.095306					80	49	2	0	0	0	0.77808	1	6370	6370		62.107	7.3311	1	26401000	+		71448	35388	50036	50118	78077	78077					-0.10859900962327629
SCRCPPWW	8	Unmodified	_SCRCPPWW_					0	0	0			REV__ENST00000251287.2_1_19:610331-613335:+|nuORF	REV__ENST00000251287.2_1_19:610331-613335:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2774658203125	2	517.72039	1033.42623	0.93025	0.00048161	-3.2242	-0.0016693	-2.294	-0.0011876	517.718559043145	51.145	0.46112	50.964	50.76	51.222	-0.18071					18	11	2	0	0	0	0.027866	1	5251	5251		31.955	0	1	135940	+		71449	29502	50037	50119	78078	78078					-0.08914937337772244
SCRWIRGL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SCRWIRGL_					1	0	0			REV__ENST00000533418.5_1_19:50315926-50316463:-|nuORF	REV__ENST00000533418.5_1_19:50315926-50316463:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	516.7735595703125	2	516.774011	1031.53347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.997	1	24.997	24.497	25.497	0								0	0	0	0.35279	1	1139	1139		94.006	24.379	1		+		71450	34603	50038	50120	78079	78079					0.01896355868120736
SCSGRCALV	9	Unmodified	_SCSGRCALV_					0	0	0		ENSG00000101198|ENST00000370316|NKAIN4	ENSG00000101198|ENST00000370316|NKAIN4	ENSG00000101198|ENST00000370316|NKAIN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2082214355469	2	448.209855	894.405157	-0.64959	-0.00029115	-2.9225	-0.0013099	-3.5721	-0.0016011	448.20838313916954	21.692	2.373	21.48	20.773	23.146	-0.2128					108	49	3	0	0	0	0.72875	1	666	666		44.117	0	1	449140			71451	2293	50039	50121	78080	78080					-0.04626947437304807
SCSQFLLEL	9	Unmodified	_SCSQFLLEL_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2621459960938	2	520.260068	1038.50558	-0.83575	-0.00043481	4.2318	0.0022016	3.396	0.0017668	520.2621018374414	22.714	1.1494	22.714	22.291	23.441	0					100	25	6	0	0	0	0.89441	1	855	855		32.812	0.85756	1	5519400			71452	9990	50040	50122	78081	78081					-0.012130119026551256
SCSSKKVR	8	Unmodified	_SCSSKKVR_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.7431640625	2	447.744919	893.475285	-0.58766	-0.00026312	-3.0446	-0.0013632	-3.6322	-0.0016263	447.743377321764	22.336	0.83223	22.151	21.906	22.738	-0.18539					32	17	3	0	0	0	0.99042	1	780	780		38.806	0	1	571120	+		71453	21708	50041	50123	78082	78082					0.02428674222835525
SCVEVKNLSL	10	Unmodified	_SCVEVKNLSL_					0	0	0			REV__ENST00000556095.5_1_14:96831069-96831366:+|nuORF	REV__ENST00000556095.5_1_14:96831069-96831366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.2903442382812	2	546.291899	1090.56925	-0.09091	-4.9663E-05	-3.1102	-0.0016991	-3.2011	-0.0017487	546.2902501523324	97.162	2.6644	97.171	96.07	98.735	0.0089111					111	61	4	0	0	0	0.69662	1	12401	12401		67.494	0	1	1572300	+		71454	35025	50042	50124	78083	78083					0.027583485344621295
SCVVGFSSL	9	Unmodified	_SCVVGFSSL_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7533874511719	2	449.720578	897.426604	0.013372	6.0135E-06	0.41309	0.00018577	0.42646	0.00019179	449.72070190895096	65.959	0.71085	65.989	65.448	66.159	0.030098					45	18	3	0	0	0	0.024436	1	7712	7712		23.042	0	1	521650		+	71455	536	50043	50125	78084	78084					-0.02621239136931308
SCWPCTSSLL	10	Unmodified	_SCWPCTSSLL_					0	0	0		ENST00000567572.5_2_16:66642239-66642332:+|nuORF	ENST00000567572.5_2_16:66642239-66642332:+|nuORF	ENST00000567572.5_2_16:66642239-66642332:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7778930664062	2	548.743728	1095.4729	-0.40093	-0.00022001	0.48502	0.00026615	0.084086	4.6141E-05	548.7437661639971	73.081	0.59389	72.804	72.539	73.133	-0.2769					32	13	3	0	0	0	0.03519	1	8544	8544		35.618	14.671	1	574540			71456	16962	50044	50126	78085	78085					-0.0710154229714135
SDAKAASGVGL	11	Unmodified	_SDAKAASGVGL_					0	0	0		ENST00000444348.1_1_1:36043143-36043293:-|nuORF	ENST00000444348.1_1_1:36043143-36043293:-|nuORF	ENST00000444348.1_1_1:36043143-36043293:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.259033203125	2	488.258914	974.503274	0.12582	6.1431E-05	-0.59759	-0.00029178	-0.47177	-0.00023035	488.25860898705105	41.413	1.5903	41.413	40.944	42.534	0					111	45	5	0	0	0	0.48498	1	3721	3721		77.318	3.0625	1	18541000			71457	14419	50045	50127	78086	78086					0.01500275683918062
SDCITKTTGLD	11	Unmodified	_SDCITKTTGLD_					0	0	0		ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-2|RTN3;nc|ENSG00000133318|O95197-7|RTN3	ENSG00000133318|ENST00000377819|RTN3	ENSG00000133318|ENST00000377819|RTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	576.3080444335938	2	577.273903	1152.53325	0.28849	0.00016654	1.7251	0.00099586	2.0136	0.0011624	577.2746399659508	74.019	0.93514	74.019	73.741	74.676	0					40	21	4	0	0	0	0.024747	1	9113	9113		18.262	0	1	394780			71458	4703	50046	50128	78087	78087					-0.03691153433078398
SDCSGGGG	8	Unmodified	_SDCSGGGG_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	639.3626098632812	1	639.20388	638.196604	1.7333	0.0011079	-0.17459	-0.0001116	1.5587	0.00099633	639.2036362743117	109.78	0.22991	109.78	109.68	109.91	0					16	10	2	0	0	0	0.027866	1	13970	13970		4.6817	0	1	206060			71459	9960	50047	50129	78088	78088					-0.13696652749865734
SDCSGGGG	8	Unmodified	_SDCSGGGG_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	639.3638305664062	1	639.20388	638.196604	1.04	0.0006648	0.52534	0.0003358	1.5654	0.0010006	639.2041318761006	110.16	0.65961	110.15	109.79	110.45	-0.009491					35	27	2	0	0	0	0.027866	1	13911	13911		4.6817	0	1	336390			71460	9960	50047	50129	78089	78089					-0.13696652749865734
SDEAERLTRLN	11	Unmodified	_SDEAERLTRLN_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8;ENST00000584876.1_1_18:29506506-29522769:-|nuORF	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	3	435.224874	1302.65279	-0.20536	-8.9378E-05	-3.5533	-0.0015465	-3.7587	-0.0016359	435.5579575356569	48.966	0.21812	48.813	48.682	48.9	-0.15277					6	5	2	0	0	0	0.024751	1	4991	4991		34.087	17.557	1	42521			71461	6343	50048	50130	78090	78090					0.013571762358424166
SDEEDPGC	8	Unmodified	_SDEEDPGC_					0	0	0			REV__ENSG00000136999|ENST00000259526|CCN3	REV__ENSG00000136999|ENST00000259526|CCN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.234619140625	2	426.139815	850.265077	-0.52214	-0.0002225	1.7192	0.00073263	1.1971	0.00051013	426.1392544594975	28.054	0.22825	28.05	27.929	28.157	-0.0042019					11	5	3	0	0	0	0.027866	1	1597	1597		12.959	4.7279	1	112840	+		71462	23717	50049	50131	78091	78091					-0.16604452960677918
SDEHDRIWIN	10	Unmodified	_SDEHDRIWIN_					0	0	0			REV__MEIS3|p.M202I|1|0.26|ENSG00000105419|chr19:47409539-47409539|C/A|missense_variant	REV__MEIS3|p.M202I|1|0.26|ENSG00000105419|chr19:47409539-47409539|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7847900390625	3	428.870431	1283.58946	-0.19309	-8.2811E-05	-0.83725	-0.00035907	-1.0303	-0.00044188	429.20403298048006	26.934	0.83095	26.777	26.314	27.145	-0.15664					24	19	2	0	0	0	0.03519	1	1367	1367		14.694	0	1	47246	+		71463	36359	50050	50132	78092	78092					-0.04098764481386752
SDEKIIKEA	9	Unmodified	_SDEKIIKEA_					0	0	0			REV__ENSG00000103449|ENST00000251020|SALL1	REV__ENSG00000103449|ENST00000251020|SALL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7904663085938	2	516.782222	1031.54989	-0.2569	-0.00013276	3.9186	0.0020251	3.6617	0.0018923	516.7841270902311	94.105	1.5772	94.105	93.645	95.222	0					106	37	4	0	0	0	0.09527	1	11951	11951		112.11	5.692	1	6750500	+		71464	21386	50051	50133	78093	78093					0.035377155151991246
SDEKIIKEA	9	Unmodified	_SDEKIIKEA_					0	0	0			REV__ENSG00000103449|ENST00000251020|SALL1	REV__ENSG00000103449|ENST00000251020|SALL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.7891845703125	2	516.782222	1031.54989	-0.38774	-0.00020038	4.0664	0.0021014	3.6787	0.0019011	516.7842608322572	94.056	1.8442	94.056	93.499	95.343	-0.00022888					113	43	5	0	0	0	0.12933	1	11910	11910		104.01	1.2402	1	6488700	+		71465	21386	50051	50133	78094	78094					0.035377155151991246
SDELQVAPL	9	Unmodified	_SDELQVAPL_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2557678222656	2	486.25584	970.497126	-0.60469	-0.00029403	0.7322	0.00035604	0.12752	6.2007E-05	486.2560050457244	52.983	1.2876	53.079	52.449	53.736	0.095669					94	34	5	0	0	0	0.23085	1	5659	5659		84.916	2.6105	1	5802900	+		71466	22725	50052	50134	78095	78095					0.010697574523646836
SDETFYHAAEL	11	Unmodified	_SDETFYHAAEL_					0	0	0			REV__ENSG00000197226|ENST00000355235|TBC1D9B	REV__ENSG00000197226|ENST00000355235|TBC1D9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.19012451171875	3	428.191059	1281.55135	-0.1661	-7.1122E-05	-2.1148	-0.00090552	-2.2808	-0.00097664	428.19007168402067	25.267	0.89406	25.04	24.665	25.559	-0.22683					57	20	4	0	0	0	0.97516	1	1182	1182		42.338	9.5875	1	1919500	+		71467	28279	50053	50135	78096	78096					-0.07816695186738798
SDFHESCIHLL	11	Unmodified	_SDFHESCIHLL_					0	0	0			REV__ENSG00000175166|ENST00000310118|PSMD2	REV__ENSG00000175166|ENST00000310118|PSMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7801208496094	3	434.204534	1299.59177	-0.41337	-0.00017949	-3.0975	-0.001345	-3.5109	-0.0015244	434.53761384916703	39.394	0.18459	39.23	39.081	39.265	-0.16459					6	4	2	0	0	0	0.024735	1	3314	3314		25.126	12.169	1	46566	+		71468	26922	50054	50136	78097	78097					-0.04604052067907105
SDFILNLVP	9	Unmodified	_SDFILNLVP_					0	0	0			REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B	REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.744873046875	2	509.2844	1016.55425	-0.66514	-0.00033874	-3.909	-0.0019908	-4.5741	-0.0023295	509.2823111467348	38.969	0.57048	38.87	38.629	39.199	-0.098755					33	15	3	0	0	0	0.024294	1	3278	3278		45.952	1.8352	1	676400	+		71469	23851	50055	50137	78098	78098					0.046632247287675455
SDFLGVISDT	10	Unmodified	_SDFLGVISDT_					0	0	0		nc|ENSG00000160058|Q9NW68-5|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-5|BSDC1	nc|ENSG00000160058|Q9NW68-5|BSDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.7752685546875	2	527.258579	1052.50261	0.24642	0.00012993	0.19205	0.00010126	0.43847	0.00023119	527.2586713726795	59.264	0.56511	59.083	58.791	59.356	-0.18134					17	13	2	0	0	0	0.03519	1	6530	6530		20.947	0	1	188630			71470	18421	50056	50138	78099	78099					-0.02154563755811978
SDFVWTPLT	9	Unmodified	_SDFVWTPLT_					0	0	0			REV__ENST00000460683.1_2_3:122439928-122440150:+|nuORF	REV__ENST00000460683.1_2_3:122439928-122440150:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2947998046875	2	533.266207	1064.51786	0.295	0.00015731	-0.29106	-0.00015521	0.0039421	2.1022E-06	533.2658814146267	95.855	0.66641	95.857	95.567	96.233	0.0020676					34	15	3	0	0	0	0.024205	1	12122	12122		53.351	0	1	253820	+		71471	32856	50057	50139	78100	78100					-0.01181652167952052
SDFWQQSK	8	Unmodified	_SDFWQQSK_					0	0	0		ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7688598632812	2	513.237981	1024.46141	-1.1237	-0.00057673	1.0806	0.00055461	-0.04311	-2.2126E-05	513.2384443914239	55.851	0.65176	55.949	55.707	56.359	0.097893					38	17	3	0	0	0	0.027866	1	6084	6084		29.15	0	1	969810			71472	6384	50058	50140	78101	78101					-0.049842800046235425
SDGDEEEVL	9	Unmodified	_SDGDEEEVL_					0	0	0		nc|ENSG00000089876|Q7L7V1-2|DHX32;ENSG00000089876|ENST00000284690|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.76153564453125	2	496.706377	991.3982	0.099523	4.9434E-05	1.9041	0.00094577	2.0036	0.00099521	496.70717872057014	41.719	0.42682	41.743	41.498	41.925	0.023006					16	11	2	0	0	0	0.024457	1	3750	3750		37.159	10.466	1	132660			71473	1917	50059	50141	78102	78102					-0.09784310303166421
SDGEKSKSK	9	Unmodified	_SDGEKSKSK_					0	0	0			REV__ENST00000605123.1_1_5:154872251-154872623:+|nuORF	REV__ENST00000605123.1_1_5:154872251-154872623:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7900390625	2	483.248546	964.482539	-0.21142	-0.00010217	-1.5755	-0.00076135	-1.7869	-0.00086353	483.24760808433103	47.763	0.72821	47.61	47.196	47.924	-0.15301					30	21	2	0	0	0	0.024367	1	4798	4798		36.447	8.5645	1	114640	+		71474	35915	50060	50142	78103	78103					-0.001123146957525023
SDGHREQIYK	10	Unmodified	_SDGHREQIYK_					0	0	0			REV__nc|ENSG00000101190|Q9UL49-2|TCFL5	REV__nc|ENSG00000101190|Q9UL49-2|TCFL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.9000549316406	3	411.538793	1231.59455	-0.33966	-0.00013978	4.2705	0.0017575	3.9308	0.0016177	411.54022749503775	28.737	0.75087	28.585	28.203	28.954	-0.15195					19	11	2	0	0	0	0.03519	1	1678	1678		9.2118	0	1	68468	+		71475	21196	50061	50143	78104	78104					-0.01198460618752506
SDGNTKPNSVN	11	Unmodified	_SDGNTKPNSVN_					0	0	0			REV__ENST00000556933.1_1_14:65067322-65068336:-|nuORF	REV__ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.7814331054688	2	566.765091	1131.51563	-0.71431	-0.00040484	0.33709	0.00019105	-0.37722	-0.00021379	567.2667004141423	78.468	0.12547	78.468	78.363	78.489	0					4	2	2	0	0	0	0.024731	1	9700	9700		28.081	0.19925	1	29135	+		71476	35054	50062	50144	78105	78105					-0.04486732643704272
SDGQLFKGKI	10	Unmodified	_SDGQLFKGKI_					0	0	0			REV__ENSG00000173145|ENST00000371361|NOC3L	REV__ENSG00000173145|ENST00000371361|NOC3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2609252929688	2	546.806031	1091.59751	-0.52303	-0.000286	0.70763	0.00038694	0.1846	0.00010094	546.8062313503824	52.659	0.35856	52.532	52.313	52.672	-0.12705					13	8	2	0	0	0	0.03519	1	5456	5456		37.508	0	1	117050	+		71477	26743	50063	50145	78106	78106					0.05537414506056848
SDGQRREW	8	Unmodified	_SDGQRREW_					0	0	0		PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2691040039062	2	517.244129	1032.47371	-0.99375	-0.00051401	0.73807	0.00038176	-0.25568	-0.00013225	517.2444746447221	28.326	0.64433	28.08	27.718	28.363	-0.24524					29	15	2	0	0	0	0.027866	1	1609	1609		99.375	38.403	1	329760			71478	18958	50064	50146	78107	78107					-0.04123243541584998
SDGQRREW	8	Unmodified	_SDGQRREW_					0	0	0		PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2681274414062	2	517.244129	1032.47371	-0.62964	-0.00032568	0.34818	0.00018009	-0.28146	-0.00014558	517.2442112461418	28.034	0.56402	27.865	27.649	28.213	-0.16897					24	13	2	0	0	0	0.027866	1	1587	1587		90.777	32.965	1	363610			71479	18958	50064	50146	78108	78108					-0.04123243541584998
SDGQRREW	8	Unmodified	_SDGQRREW_					0	0	0		PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	PFAS|p.P413S|1|0.26|ENSG00000178921|chr17:8258100-8258100|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2677001953125	2	517.244129	1032.47371	-0.27101	-0.00014018	0.10891	5.6333E-05	-0.1621	-8.3843E-05	517.2440748227089	27.988	0.59304	27.836	27.61	28.203	-0.15195					30	14	3	0	0	0	0.027866	1	1577	1577		120.62	59.649	1	554300			71480	18958	50064	50146	78109	78109					-0.04123243541584998
SDGSFLLSML	10	Oxidation (M)	_SDGSFLLSM(Oxidation (M))L_		SDGSFLLSM(1)L		SDGSFLLSM(130)L	0	0	1		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.302001953125	2	543.262807	1084.51106	1.0123	0.00054994	3.0863	0.0016767	4.0986	0.0022266	543.2644039184062	74.076	0.34337	74.076	73.913	74.256	0					10	7	2	0	0	0	0.03519	1	9074	9074		129.68	50.232	1	278490			71481	5487	50065	50147	78110	78110		231			-0.027813331108291095
SDGSLVPELL	10	Unmodified	_SDGSLVPELL_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2771606445312	2	515.276772	1028.53899	-0.46513	-0.00023967	-3.3774	-0.0017403	-3.8425	-0.00198	515.2758953406969	68.545	1.2447	68.545	68.179	69.423	0					87	32	4	0	0	0	0.50466	1	8244	8244		87.754	13.499	1	8842800			71482	18758	50066	50148	78111	78111					0.02586313140909624
SDGSQKSLR	9	Unmodified	_SDGSQKSLR_					0	0	0		nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.3057861328125	2	489.254163	976.493772	0.33604	0.00016441	-3.98	-0.0019473	-3.644	-0.0017828	489.25204980111664	79.968	1.7806	79.749	79.076	80.856	-0.21923					57	42	2	0	0	0	0.024397	1	9647	9647		39.253	0	1	188420			71483	1118	50067	50149	78112	78112					0.0045850739838897425
SDGSSCFSGG	10	Unmodified	_SDGSSCFSGG_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.25360107421875	2	452.161082	902.307611	-0.25973	-0.00011744	1.0805	0.00048854	0.82073	0.0003711	452.16113611903637	20.697	0.2366	20.592	20.424	20.661	-0.10477					6	4	2	0	0	0	0.03519	1	553	553		10.265	0	1	8272.6	+		71484	34932	50068	50150	78113	78113					-0.1474505783241966
SDGVIKLTPIS	11	Unmodified	_SDGVIKLTPIS_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.220947265625	2	565.326796	1128.63904	0.24976	0.0001412	-0.81195	-0.00045902	-0.56219	-0.00031782	565.3261715011843	37.008	0.42404	36.815	36.578	37.002	-0.193					14	10	2	0	0	0	0.024732	1	2959	2959		25.574	3.6142	1	111360			71485	3207	50069	50151	78114	78114					0.07986550474697651
SDIIFFTVAS	10	Unmodified	_SDIIFFTVAS_					0	0	0		ENST00000431580.1_1_20:25715260-25715392:+|nuORF	ENST00000431580.1_1_20:25715260-25715392:+|nuORF	ENST00000431580.1_1_20:25715260-25715392:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.7484130859375	2	550.28714	1098.55973	0.15435	8.4938E-05	-0.26258	-0.00014449	-0.10822	-5.9555E-05	550.2865849121123	58.79	0.48291	58.608	58.308	58.791	-0.18134					17	11	2	0	0	0	0.03519	1	6438	6438		27.882	1.0861	1	171110			71486	14189	50070	50152	78115	78115					0.01438903520556778
SDIIFFTVAS	10	Unmodified	_SDIIFFTVAS_					0	0	0		ENST00000431580.1_1_20:25715260-25715392:+|nuORF	ENST00000431580.1_1_20:25715260-25715392:+|nuORF	ENST00000431580.1_1_20:25715260-25715392:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.28714	1098.55973	-0.46335	-0.00025497	0.40765	0.00022433	-0.055696	-3.0649E-05	550.2868945900244	58.909	0.50786	58.721	58.471	58.979	-0.18795	0.033749	0.00073268	NaN	20.947	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143480			71487	14189	50070	50152							0.01438903520556778
SDIIFFTVAS	10	Unmodified	_SDIIFFTVAS_					0	0	0		ENST00000431580.1_1_20:25715260-25715392:+|nuORF	ENST00000431580.1_1_20:25715260-25715392:+|nuORF	ENST00000431580.1_1_20:25715260-25715392:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.28714	1098.55973	0.51124	0.00028133	-0.48153	-0.00026498	0.02971	1.6349E-05	550.2866793046046	58.974	0.43247	58.733	58.422	58.854	-0.24165	0.045326	-0.00024593	NaN	20.947	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221610			71488	14189	50070	50152							0.01438903520556778
SDIIKDSDPN	10	Unmodified	_SDIIKDSDPN_					0	0	0			REV__ENST00000474858.1_1_7:65970145-65970616:-|nuORF	REV__ENST00000474858.1_1_7:65970145-65970616:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2678833007812	2	552.264393	1102.51423	-1.2896	-0.00071222	-2.5576	-0.0014124	-3.8472	-0.0021247	552.7652932263927	90.597	0.25215	90.597	90.384	90.636	0					7	5	2	0	0	0	0.03519	1	11448	11448		19.997	0	1	50983	+		71489	33278	50071	50153	78116	78116					-0.032923667324666894
SDIILVSDKS	10	Unmodified	_SDIILVSDKS_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2822875976562	2	538.795329	1075.5761	-0.94388	-0.00050856	2.4872	0.0013401	1.5434	0.00083155	538.7962903734366	52.302	0.58303	52.118	51.852	52.435	-0.18404					20	14	2	0	0	0	0.03519	1	5411	5411		19.104	0	1	246020			71490	3368	50072	50154	78117	78117					0.0413398468667765
SDIIVPHKY	9	Unmodified	_SDIIVPHKY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2384033203125	2	536.295299	1070.57605	-0.51649	-0.00027699	-1.1004	-0.00059011	-1.6168	-0.0008671	536.2942151363923	60.819	0.30879	60.613	60.463	60.772	-0.20599					10	7	2	0	0	0	0.022756	1	6762	6762		79.451	16.145	1	116940			71491	6479;18400	50073	50155	78118	78118					0.04358029477339187
SDILHSLFSTY	11	Unmodified	_SDILHSLFSTY_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2369689941406	3	428.215316	1281.62412	-0.57224	-0.00024504	4.0364	0.0017284	3.4641	0.0014834	428.21680592709305	29.816	1.8291	29.825	29.209	31.038	0.0086689					107	44	4	0	0	0	0.024771	1	1882	1882		56.632	16.574	1	812450			71492	5081	50074	50156	78119	78119					-0.005429413932688476
SDILLVNEL	9	Unmodified	_SDILLVNEL_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR;REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2818298339844	2	508.28714	1014.55973	0.52947	0.00026912	-0.10013	-5.0895E-05	0.42934	0.00021823	508.28695405365755	84.366	0.80762	84.162	83.951	84.759	-0.20329					39	18	3	0	0	0	0.17845	1	10199	10199		93.143	4.9663	1	762900	+		71493	25804;34372	50075	50157	78120	78120					0.05302903520566815
SDILTCYEA	9	Carbamidomethyl (C)	_SDILTC(Carbamidomethyl (C))YEA_	SDILTC(1)YEA		SDILTC(94)YEA		0	1	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2383422851562	2	536.23679	1070.45903	-1.0488	-0.00056243	3.1753	0.0017027	2.1264	0.0011403	536.2386558258349	60.689	1.9053	60.475	60.157	62.062	-0.21339					130	50	5	0	0	0	0.17455	1	6946	6946		94.006	8.6469	1	26122000	+		71494	21662	50076	50158	78121	78121	275				-0.07338496524585025
SDIRRMQEVK	10	Unmodified	_SDIRRMQEVK_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8467102050781	3	421.227561	1260.66085	-0.12268	-5.1677E-05	-2.6341	-0.0011095	-2.7568	-0.0011612	421.2263782168464	33.291	0.35711	33.06	32.916	33.273	-0.23107					12	8	2	0	0	0	0.03519	1	2362	2362		21.78	8.2725	1	37428			71495	8451	50077	50159	78122	78122					0.04095031951624151
SDIRRMQEVK	10	Unmodified	_SDIRRMQEVK_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	421.227561	1260.66085	-0.63689	-0.00026827	3.2469	0.0013677	2.61	0.0010994	421.2294106276123	32.977	0.34197	32.983	32.738	33.08	0.0066261	-0.021821	0.0035001	NaN	21.78	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56782			71496	8451	50077	50159							0.04095031951624151
SDIRRMQEVK	10	Unmodified	_SDIRRMQEVK_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	421.227561	1260.66085	0.46571	0.00019617	2.7536	0.0011599	3.2193	0.0013561	421.22943074882306	32.909	0.38415	32.972	32.728	33.112	0.062885	-0.032849	0.0028767	NaN	21.78	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62166			71497	8451	50077	50159							0.04095031951624151
SDKATVEKDA	10	Unmodified	_SDKATVEKDA_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2554321289062	2	532.266936	1062.51932	-0.32258	-0.0001717	-2.3939	-0.0012742	-2.7165	-0.0014459	532.2661248776404	38.84	0.38245	38.615	38.32	38.702	-0.2257					16	9	3	0	0	0	0.03519	1	3227	3227		62.107	12.571	1	103630	+		71498	27773	50078	50160	78123	78123					-0.009440628698484943
SDKIIYSH	8	Unmodified	_SDKIIYSH_					0	0	0		ENSG00000156052|ENST00000286548|GNAQ;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000088256|ENST00000078429|GNA11	ENSG00000156052|ENST00000286548|GNAQ	ENSG00000156052|ENST00000286548|GNAQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7788391113281	2	481.750724	961.486896	-0.51566	-0.00024842	0.49938	0.00024058	-0.016282	-7.8437E-06	481.7496268847837	56.518	0.11143	56.354	56.275	56.387	-0.16431					4	2	2	0	0	0	0.027866	1	6272	6272		19.36	0	1	42862			71499	6510	50079	50161	78124	78124					0.0046119451779986775
SDKIVMLVP	9	Unmodified	_SDKIVMLVP_					0	0	0			REV__nc|ENSG00000164830|Q8N573-2|OXR1	REV__nc|ENSG00000164830|Q8N573-2|OXR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2889709472656	2	501.288628	1000.5627	0.0063351	3.1757E-06	3.9276	0.0019688	3.9339	0.001972	501.29041154116453	88.404	1.9279	88.273	87.955	89.883	-0.13135					92	45	3	0	0	0	0.80658	1	10770	10770		38.806	3.1879	1	1364200	+		71500	36870	50080	50162	78125	78125					0.062444553737236674
SDKKEKQL	8	Unmodified	_SDKKEKQL_					0	0	0			REV__ENST00000463944.1_1_6:26426426-26428241:+|nuORF	REV__ENST00000463944.1_1_6:26426426-26428241:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2586364746094	2	488.277106	974.53966	-0.33977	-0.0001659	-3.0439	-0.0014862	-3.3836	-0.0016522	488.27484241058653	41.591	0.34923	41.614	41.394	41.743	0.023006					12	9	2	0	0	0	0.027866	1	3683	3683		45.952	0	1	222980	+		71501	32954	50081	50163	78126	78126					0.051371525806075624
SDKKMGGDDV	10	Unmodified	_SDKKMGGDDV_					0	0	0		ENSG00000260230|ENST00000561981|FRRS1L	ENSG00000260230|ENST00000561981|FRRS1L	ENSG00000260230|ENST00000561981|FRRS1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.279296875	2	526.239864	1050.46517	-0.031744	-1.6705E-05	3.8767	0.0020401	3.845	0.0020234	526.2418458137485	87.073	1.0343	87.037	86.734	87.769	-0.035355					39	24	3	0	0	0	0.03519	1	10941	10941		30.318	19.452	1	124130			71502	10940	50082	50164	78127	78127					-0.05803978293079126
SDKKNYLN	8	Unmodified	_SDKKNYLN_					0	0	0			REV__PTBP2|p.I370N|1|0.22|ENSG00000117569|chr1:96806896-96806896|T/A|missense_variant	REV__PTBP2|p.I370N|1|0.22|ENSG00000117569|chr1:96806896-96806896|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.2353820800781	2	491.253631	980.49271	-0.98508	-0.00048392	-0.54397	-0.00026723	-1.5291	-0.00075115	491.2535945629312	40.761	0.33365	40.625	40.418	40.752	-0.13554					18	8	3	0	0	0	0.027866	1	3523	3523		26.693	0	1	184510	+		71503	37416	50083	50165	78128	78128					0.001682930294578
SDKLGMQDCY	10	Carbamidomethyl (C),Oxidation (M)	_SDKLGM(Oxidation (M))QDC(Carbamidomethyl (C))Y_	SDKLGMQDC(1)Y	SDKLGM(1)QDCY	SDKLGMQDC(120)Y	SDKLGM(120)QDCY	0	1	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	616.7500610351562	2	616.749738	1231.48492	-1.3429	-0.00082826	0.82498	0.00050881	-0.51797	-0.00031946	616.7503282064091	48.443	1.2269	48.345	48.002	49.229	-0.097549					92	32	5	0	0	0	0.24462	4	4811	4790;4801;4811;4825		115.49	19.311	1	7833300	+		71504	30824	50084	50166	78129;78130;78131;78132	78131	401	869			-0.12155970344610978
SDKLGMQDCY	10	Carbamidomethyl (C),Oxidation (M)	_SDKLGM(Oxidation (M))QDC(Carbamidomethyl (C))Y_	SDKLGMQDC(1)Y	SDKLGM(1)QDCY	SDKLGMQDC(140)Y	SDKLGM(140)QDCY	0	1	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	616.7493896484375	2	616.749738	1231.48492	-1.4848	-0.00091577	0.69624	0.00042941	-0.78859	-0.00048636	616.750282998941	48.762	1.2891	48.482	48.183	49.472	-0.27977					106	34	5	0	0	0	0.082875	3	4857	4845;4857;4870		139.97	26.739	1	8401100	+		71505	30824	50084	50166	78133;78134;78135	78134	401	869			-0.12155970344610978
SDKLGMQDCY	10	Carbamidomethyl (C),Oxidation (M)	_SDKLGM(Oxidation (M))QDC(Carbamidomethyl (C))Y_	SDKLGMQDC(1)Y	SDKLGM(1)QDCY	SDKLGMQDC(120)Y	SDKLGM(120)QDCY	0	1	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	616.7492065429688	2	616.749738	1231.48492	-0.2508	-0.00015468	-0.42924	-0.00026473	-0.68004	-0.00041942	616.7495781206245	48.596	1.3655	48.414	48.091	49.456	-0.18206					103	36	4	0	0	0	0.21865	2	4847	4822;4847		118.74	25.6	1	7747800	+		71506	30824	50084	50166	78136;78137	78137	401	869			-0.12155970344610978
SDKLGMQDCY	10	Carbamidomethyl (C),Oxidation (M)	_SDKLGM(Oxidation (M))QDC(Carbamidomethyl (C))Y_					0	1	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	616.749738	1231.48492	-1.3429	-0.00082826	0.82498	0.00050881	-0.51797	-0.00031946	616.7503282064091	48.443	1.2269	48.345	48.002	49.229	-0.097549	-0.068765	0.00052814	NaN	139.97	92	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7833300	+		71507	30824	50084	50166			401	869			-0.12155970344610978
SDKLGMQDCY	10	Carbamidomethyl (C),Oxidation (M)	_SDKLGM(Oxidation (M))QDC(Carbamidomethyl (C))Y_					0	1	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	616.749738	1231.48492	-1.4848	-0.00091577	0.69624	0.00042941	-0.78859	-0.00048636	616.750282998941	48.762	1.2891	48.482	48.183	49.472	-0.27977	0.068426	0.00036934	NaN	139.97	106	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8401100	+		71508	30824	50084	50166			401	869			-0.12155970344610978
SDKLGMQDCY	10	Carbamidomethyl (C),Oxidation (M)	_SDKLGM(Oxidation (M))QDC(Carbamidomethyl (C))Y_					0	1	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	616.749738	1231.48492	-0.2508	-0.00015468	-0.42924	-0.00026473	-0.68004	-0.00041942	616.7495781206245	48.596	1.3655	48.414	48.091	49.456	-0.18206	0.00033977	-0.0010189	NaN	139.97	103	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7747800	+		71509	30824	50084	50166			401	869			-0.12155970344610978
SDKLGMQDCY	10	Oxidation (M)	_SDKLGM(Oxidation (M))QDCY_		SDKLGM(1)QDCY		SDKLGM(140)QDCY	0	0	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.2391357421875	2	588.239006	1174.46346	-1.2771	-0.00075123	-0.1785	-0.000105	-1.4556	-0.00085623	588.2391920713409	53.674	1.6755	53.538	53.171	54.847	-0.13617					140	48	5	0	0	0	0.087538	4	5639	5639;5651;5663;5676		138.83	28.706	1	36855000	+		71510	30824	50084	50167	78138;78139;78140;78141	78138		869			-0.11679355373325961
SDKLGMQDCY	10	Oxidation (M)	_SDKLGM(Oxidation (M))QDCY_		SDKLGM(1)QDCY		SDKLGM(110)QDCY	0	0	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.2389526367188	2	588.239006	1174.46346	-0.91752	-0.00053972	-0.51351	-0.00030207	-1.431	-0.00084179	588.2390151442572	53.853	1.8386	53.607	53.275	55.114	-0.2453					150	54	6	0	0	0	0.26127	5	5661	5637;5661;5673;5686;5701		113.41	13.904	1	39180000	+		71511	30824	50084	50167	78142;78143;78144;78145;78146	78143		869			-0.11679355373325961
SDKLGMQDCY	10	Oxidation (M)	_SDKLGM(Oxidation (M))QDCY_		SDKLGM(1)QDCY		SDKLGM(120)QDCY	0	0	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.2384033203125	2	588.239006	1174.46346	-0.8968	-0.00052753	-0.54267	-0.00031922	-1.4395	-0.00084675	588.2389775691996	53.769	1.8175	53.571	53.238	55.055	-0.19739					142	51	6	0	0	0	0.21865	2	5655	5643;5655		118.74	14.782	1	38905000	+		71512	30824	50084	50167	78147;78148	78148		869			-0.11679355373325961
SDKLGMQDCY	10	Oxidation (M)	_SDKLGM(Oxidation (M))QDCY_					0	0	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	588.239006	1174.46346	-1.2771	-0.00075123	-0.1785	-0.000105	-1.4556	-0.00085623	588.2391920713409	53.674	1.6755	53.538	53.171	54.847	-0.13617	-0.034441	0.00027843	NaN	138.83	140	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36855000	+		71513	30824	50084	50167				869			-0.11679355373325961
SDKLGMQDCY	10	Oxidation (M)	_SDKLGM(Oxidation (M))QDCY_					0	0	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	588.239006	1174.46346	-0.91752	-0.00053972	-0.51351	-0.00030207	-1.431	-0.00084179	588.2390151442572	53.853	1.8386	53.607	53.275	55.114	-0.2453	0.035265	-0.0001157	NaN	138.83	150	54	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39180000	+		71514	30824	50084	50167				869			-0.11679355373325961
SDKLGMQDCY	10	Oxidation (M)	_SDKLGM(Oxidation (M))QDCY_					0	0	1			REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	REV__ENST00000357248.8_2_9:2192873-2192969:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	588.239006	1174.46346	-0.8968	-0.00052753	-0.54267	-0.00031922	-1.4395	-0.00084675	588.2389775691996	53.769	1.8175	53.571	53.238	55.055	-0.19739	-0.00082325	-0.00015001	NaN	138.83	142	51	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38905000	+		71515	30824	50084	50167				869			-0.11679355373325961
SDKNLNDQT	9	Unmodified	_SDKNLNDQT_					0	0	0			REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7810668945312	2	517.741085	1033.46762	-0.27543	-0.0001426	1.6139	0.00083557	1.3385	0.00069297	517.7416806797393	42.209	0.88743	42.077	41.641	42.528	-0.1322					42	25	2	0	0	0	0.024447	1	3809	3809		25.574	4.6271	1	356510	+		71516	29051	50085	50168	78149	78149					-0.047778065637658074
SDKNTIIDI	9	Unmodified	_SDKNTIIDI_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7780456542969	2	509.774396	1017.53424	-0.47714	-0.00024323	4.3952	0.0022405	3.918	0.0019973	509.7765658472115	82.629	1.0705	82.629	82.195	83.266	0					37	24	2	0	0	0	0.6238	1	10332	10332		51.193	7.0759	1	1494100			71517	1054	50086	50169	78150	78150					0.026174289981554466
SDKQLTDILL	10	Unmodified	_SDKQLTDILL_					0	0	0		ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.3259887695312	2	573.324254	1144.63395	-0.5235	-0.00030014	2.8128	0.0016127	2.2893	0.0013125	573.3256531057511	72.733	1.347	72.535	72.248	73.595	-0.19811					59	32	4	0	0	0	0.96822	1	8521	8521		49.536	1.5765	1	1057800			71518	10572	50087	50170	78151	78151					0.06742246612111558
SDKSAFTRVA	10	Unmodified	_SDKSAFTRVA_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5;ENST00000581133.5_1_17:26906381-26907081:-|nuORF	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2850952148438	2	541.285463	1080.55637	-0.32818	-0.00017764	-0.21731	-0.00011763	-0.54549	-0.00029527	541.2852850005885	22.605	0.9293	22.403	22.048	22.977	-0.20199					50	19	4	0	0	0	0.75651	1	804	804		63.534	8.8115	1	930260			71519	1583	50088	50171	78152	78152					0.019316534665676954
SDKYSEEN	8	Unmodified	_SDKYSEEN_					0	0	0			REV__ENST00000445359.1_1_9:38643302-38643692:+|nuORF	REV__ENST00000445359.1_1_9:38643302-38643692:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.7886962890625	2	486.201261	970.38797	-0.9178	-0.00044623	1.7573	0.0008544	0.8395	0.00040817	486.2020372043667	46.96	0.55295	47.019	46.766	47.319	0.059097					24	14	2	0	0	0	0.027866	1	4619	4619		53.351	0	1	167250	+		71520	26080	50089	50172	78153	78153					-0.09840873237749292
SDLAPPRKALF	11	Unmodified	_SDLAPPRKALF_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.5682373046875	3	405.567912	1213.68191	0.39078	0.00015849	0.049998	2.0278E-05	0.44077	0.00017876	405.5678804193656	42.295	1.0287	42.163	41.825	42.853	-0.1322					83	29	4	0	0	0	0.99689	1	3863	3863		37.508	3.5865	1	5051500			71521	7537	50090	50173	78154	78154					0.08361365322775782
SDLDSYGHLTL	11	Unmodified	_SDLDSYGHLTL_					0	0	0			REV__ENSG00000180834|ENST00000318631|MAP6D1	REV__ENSG00000180834|ENST00000318631|MAP6D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.7528991699219	3	407.531304	1219.57208	0.50474	0.0002057	-3.0413	-0.0012394	-2.5366	-0.0010337	407.53000230648104	44.952	0.78704	44.952	44.691	45.478	0					49	22	3	0	0	0	0.024727	1	4384	4384		36.318	23.885	1	1358400	+		71522	27367	50091	50174	78155	78155					-0.0289210480705151
SDLEEYFA	8	Unmodified	_SDLEEYFA_					0	0	0			REV__ZSCAN20|p.P560A|1|0.08|ENSG00000121903|chr1:33493420-33493420|C/G|missense_variant	REV__ZSCAN20|p.P560A|1|0.08|ENSG00000121903|chr1:33493420-33493420|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2559814453125	2	487.211098	972.407643	-0.43905	-0.00021391	-2.8414	-0.0013843	-3.2804	-0.0015983	487.20957161822787	53.071	0.51643	53.071	52.75	53.267	0					19	13	2	0	0	0	0.027866	1	5710	5710		52.299	25.606	1	136310	+		71523	37827	50092	50175	78156	78156					-0.07966497226993852
SDLFSFQDS	9	Unmodified	_SDLFSFQDS_					0	0	0		ENST00000598647.1_1_19:50215929-50216859:+|nuORF	ENST00000598647.1_1_19:50215929-50216859:+|nuORF	ENST00000598647.1_1_19:50215929-50216859:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2633056640625	2	523.227279	1044.44001	-1.1097	-0.00058063	-4.0192	-0.0021029	-5.1289	-0.0026836	523.2260564512459	54.072	0.18354	53.936	53.837	54.021	-0.13616					8	5	2	0	0	0	0.024436	1	5706	5706		47.916	18.766	1	207440			71524	17476	50093	50176	78157	78157					-0.08043709823982681
SDLGLDLAFW	10	Unmodified	_SDLGLDLAFW_					0	0	0			REV__nc|ENSG00000166321|Q86X67-4|NUDT13	REV__nc|ENSG00000166321|Q86X67-4|NUDT13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.8310546875	2	568.784764	1135.55498	-0.84318	-0.00047959	0.98888	0.00056246	0.1457	8.2873E-05	568.7855546422874	90.117	0.52552	89.962	89.738	90.264	-0.1552					16	12	2	0	0	0	0.03519	1	11020	11020		35.618	0	1	103720	+		71525	25999	50094	50177	78158	78158					-0.0073798062219339045
SDLIDQCCDLG	11	Unmodified	_SDLIDQCCDLG_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;ENST00000483628.1_1:206566231-206579954:+|nuORF;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	591.2438354492188	2	591.244289	1180.47402	-2.0383	-0.0012051	0.73983	0.00043742	-1.2984	-0.00076769	591.2446688258151	35.36	1.144	35.36	35.018	36.162	0					86	30	5	0	0	0	1.0238	2	2724	2703;2724		31.53	3.6248	1	7658900			71526	10972	50095	50178	78159;78160	78160					-0.10899372718927225
SDLIKRLN	8	Unmodified	_SDLIKRLN_					0	0	0			REV__nc|ENSG00000165209|Q96SI9-2|STRBP	REV__nc|ENSG00000165209|Q96SI9-2|STRBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2459716796875	2	479.787641	957.56073	0.73516	0.00035272	-0.3606	-0.00017301	0.37456	0.00017971	479.7872789264174	51.861	0.85433	51.677	51.218	52.073	-0.18404					56	22	3	0	0	0	0.027866	1	5274	5274		24.203	0	1	1244100	+		71527	25859	50096	50179	78161	78161					0.08025162680144149
SDLLRKQP	8	Unmodified	_SDLLRKQP_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.9744873046875	2	478.779816	955.545079	-0.72304	-0.00034618	-0.40379	-0.00019332	-1.1268	-0.0005395	478.7794209772614	44.044	0.4258	43.899	43.639	44.065	-0.14471					26	11	3	0	0	0	0.027866	1	4175	4175		29.15	4.9468	1	465900	+		71528	22434	50097	50180	78162	78162					0.0655287616308442
SDLLRKQP	8	Unmodified	_SDLLRKQP_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.779816	955.545079	-0.10684	-5.1154E-05	-2.4634	-0.0011794	-2.5702	-0.0012306	478.7791432578001	43.899	0.36626	43.935	43.705	44.071	0.036091	0.017784	-0.0013571	NaN	27.882	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563470	+		71529	22434	50097	50180							0.0655287616308442
SDLNLPPNP	9	Unmodified	_SDLNLPPNP_					0	0	0		ENST00000537699.1_1_12:10603035-10603776:-|nuORF;nc|ENSG00000134545|P26715-2|KLRC1;ENSG00000134545|ENST00000359151|KLRC1	ENST00000537699.1_1_12:10603035-10603776:-|nuORF	ENST00000537699.1_1_12:10603035-10603776:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.74853515625	2	483.748182	965.481811	-0.15459	-7.4781E-05	0.9903	0.00047905	0.83571	0.00040427	483.7485057417841	68.501	0.98721	68.501	68.179	69.166	0					61	25	3	0	0	0	0.35646	1	8246	8246		68.787	2.3575	1	3879100			71530	4808	50098	50181	78163	78163					-0.0023110934480428114
SDLNLPPNP	9	Unmodified	_SDLNLPPNP_					0	0	0		ENST00000537699.1_1_12:10603035-10603776:-|nuORF;nc|ENSG00000134545|P26715-2|KLRC1;ENSG00000134545|ENST00000359151|KLRC1	ENST00000537699.1_1_12:10603035-10603776:-|nuORF	ENST00000537699.1_1_12:10603035-10603776:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.748182	965.481811	0.29685	0.0001436	0.056476	2.732E-05	0.35333	0.00017092	483.7481681793283	68.692	0.60525	68.449	68.227	68.832	-0.24277	-0.062554	-0.00053821	NaN	68.787	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332120			71531	4808	50098	50181							-0.0023110934480428114
SDLNLPPNP	9	Unmodified	_SDLNLPPNP_					0	0	0		ENST00000537699.1_1_12:10603035-10603776:-|nuORF;nc|ENSG00000134545|P26715-2|KLRC1;ENSG00000134545|ENST00000359151|KLRC1	ENST00000537699.1_1_12:10603035-10603776:-|nuORF	ENST00000537699.1_1_12:10603035-10603776:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.748182	965.481811	0.51178	0.00024757	-1.5425	-0.00074617	-1.0307	-0.0004986	483.74815703710067	68.685	0.52361	68.454	68.195	68.719	-0.23048	-0.057578	-0.0020852	NaN	68.787	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311380			71532	4808	50098	50181							-0.0023110934480428114
SDLPFRPSHDN	11	Unmodified	_SDLPFRPSHDN_					0	0	0			REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	REV__DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.8708190917969	3	428.870431	1283.58946	1.6771	0.00071925	-1.8057	-0.00077442	-0.12866	-5.5179E-05	428.8697320031418	36.713	1.7492	36.504	36.121	37.87	-0.2092					125	44	4	0	0	0	0.9544	1	2871	2871		46.955	12.868	1	9378100	+		71533	19655	50099	50182	78164	78164					-0.040987644813640145
SDLSWPPKV	9	Unmodified	_SDLSWPPKV_					0	0	0		AluSz_dup93694|chr19:16102069-16102357:+|7.557964954863795|0.1659909287906949|5.51|522.0|13|1|anti-sense	AluSz_dup93694|chr19:16102069-16102357:+|7.557964954863795|0.1659909287906949|5.51|522.0|13|1|anti-sense	AluSz_dup93694|chr19:16102069-16102357:+|7.557964954863795|0.1659909287906949|5.51|522.0|13|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.321533203125	2	514.7742	1027.53385	-0.11315	-5.8245E-05	0.67592	0.00034794	0.56277	0.0002897	514.7743397183574	71.688	1.6401	71.699	71.013	72.653	0.010735					65	42	2	0	0	0	0.024025	1	8615	8615		62.107	0	1	1790000			71534	80	50100	50183	78165	78165					0.021180540689329064
SDLTRVRNT	9	Unmodified	_SDLTRVRNT_					0	0	0		nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4	nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2890014648438	2	531.288537	1060.56252	-1.1866	-0.00063044	-2.7113	-0.0014405	-3.8979	-0.0020709	531.2862865915182	45.924	0.52512	45.773	45.611	46.136	-0.15156					23	14	2	0	0	0	0.024466	1	4468	4468		18.262	0	1	447990			71535	6305	50101	50184	78166	78166					0.03466171698096332
SDLVILLPV	9	Unmodified	_SDLVILLPV_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.76983642578125	2	484.804968	967.595384	-0.95212	-0.00046159	-2.158	-0.0010462	-3.1101	-0.0015078	484.8037129617181	35.775	0.54444	35.775	35.38	35.924	0					27	13	3	0	0	0	0.024325	1	2733	2733		40.573	3.4135	1	463620	+		71536	28078	50102	50185	78167	78167					0.11028985768257371
SDLVILLPV	9	Unmodified	_SDLVILLPV_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.804968	967.595384	-1.1625	-0.00056357	-1.9673	-0.00095377	-3.1298	-0.0015173	484.8038590352794	35.596	0.54973	35.574	35.233	35.783	-0.021767	-0.08015	0.00040022	NaN	40.573	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465250	+		71537	28078	50102	50185							0.11028985768257371
SDLVILLPV	9	Unmodified	_SDLVILLPV_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	484.804968	967.595384	-0.79428	-0.00038507	-2.3786	-0.0011531	-3.1729	-0.0015382	484.80370095785656	35.715	0.55185	35.759	35.381	35.933	0.04406	0.10486	1.4615E-06	NaN	40.573	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409250	+		71538	28078	50102	50185							0.11028985768257371
SDLVILLPV	9	Unmodified	_SDLVILLPV_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.804968	967.595384	-0.55969	-0.00027134	-1.6153	-0.00078313	-2.175	-0.0010545	484.8038845658138	35.791	0.35748	35.586	35.428	35.786	-0.20518	-0.06818	0.00074149	NaN	40.573	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124650	+		71539	28078	50102	50185							0.11028985768257371
SDLVILLPV	9	Unmodified	_SDLVILLPV_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.804968	967.595384	-0.18152	-8.8001E-05	-2.9093	-0.0014105	-3.0908	-0.0014985	484.80353607847354	35.789	0.52162	35.577	35.395	35.917	-0.21246	-0.077671	-0.00051316	NaN	40.573	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136850	+		71540	28078	50102	50185							0.11028985768257371
SDLVKQGRV	9	Unmodified	_SDLVKQGRV_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2905578613281	2	501.290548	1000.56654	-0.51649	-0.00025891	-0.28986	-0.0001453	-0.80636	-0.00040422	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.80003	1	10799	10799		39.253	0	1	8326900	+		71541	21886	50103	50186	78168	78168					0.06628261191815454
SDLVKQGRV	9	Unmodified	_SDLVKQGRV_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	501.290548	1000.56654	0.66235	0.00033203	-0.83167	-0.00041691	-0.16932	-8.4879E-05	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	0.87448	1	10143	10143		34.173	1.3601	1	3151900	+		71542	21886	50103	50186	78169	78169					0.06628261191815454
SDLVKQGRV	9	Unmodified	_SDLVKQGRV_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904968261719	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.70156	1	10465	10465		45.972	1.8554	1	10557000	+		71543	21886	50103	50186	78170	78170					0.06628261191815454
SDLVKQGRV	9	Unmodified	_SDLVKQGRV_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2904968261719	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.85329	1	10408	10408		35.618	4.0885	1	10571000	+		71544	21886	50103	50186	78171	78171					0.06628261191815454
SDLVKQGRV	9	Unmodified	_SDLVKQGRV_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.28997802734375	2	501.290548	1000.56654	0.0063351	3.1757E-06	0.097601	4.8927E-05	0.10394	5.2102E-05	501.29041154116453	88.404	1.9279	88.273	87.955	89.883	-0.13135					92	45	3	0	0	0	0.75397	1	10781	10781		42.396	5.237	1	1364200	+		71545	21886	50103	50186	78172	78172					0.06628261191815454
SDLVKQGRV	9	Unmodified	_SDLVKQGRV_					0	0	0			REV__ENSG00000110955|ENST00000262030|ATP5F1B	REV__ENSG00000110955|ENST00000262030|ATP5F1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2906188964844	2	501.290548	1000.56654	-0.25386	-0.00012726	-0.032713	-1.6399E-05	-0.28657	-0.00014365	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.94779	1	10081	10081		29.17	1.0886	1	2648000	+		71546	21886	50103	50186	78173	78173					0.06628261191815454
SDLVLSLVW	9	Unmodified	_SDLVLSLVW_					0	0	0		ENST00000399173.5_1_1:27952575-27952749:-|nuORF	ENST00000399173.5_1_1:27952575-27952749:-|nuORF	ENST00000399173.5_1_1:27952575-27952749:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.25	2	516.292225	1030.5699	-1.1052	-0.00057062	-2.7053	-0.0013967	-3.8106	-0.0019674	516.29069517254	30.589	0.58193	30.663	30.378	30.96	0.074316					18	13	3	0	0	0	0.024535	1	1892	1892		25.45	8.0852	1	95641			71547	13637	50104	50187	78174	78174					0.055835112458453295
SDMKQLAF	8	Unmodified	_SDMKQLAF_					0	0	0			REV__ENSG00000135249|ENST00000257700|RINT1	REV__ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.2898864746094	2	470.233853	938.453153	-0.65652	-0.00030872	1.9591	0.00092126	1.3026	0.00061254	470.2348155397504	27.836	0.86229	27.668	27.186	28.048	-0.16816					39	20	3	0	0	0	0.027866	1	1569	1569		33.516	0	1	867630	+		71548	23523	50105	50188	78175	78175					-0.018535502456074937
SDMLLYTSK	9	Unmodified	_SDMLLYTSK_					0	0	0		ENSG00000006607|ENST00000264042|FARP2	ENSG00000006607|ENST00000264042|FARP2	ENSG00000006607|ENST00000264042|FARP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8139038085938	2	529.26535	1056.51615	-1.1154	-0.00059035	1.3097	0.00069317	0.19427	0.00010282	529.2663006747913	29.444	0.34865	29.199	28.967	29.316	-0.24524					10	7	2	0	0	0	0.024477	1	1793	1793		35.618	12.576	1	27500			71549	797	50106	50189	78176	78176					-0.009850292482269651
SDNFRPPGE	9	Unmodified	_SDNFRPPGE_					0	0	0		RBM12B|p.P862S|1|0.42|ENSG00000183808|chr8:93733827-93733827|G/A|missense_variant	RBM12B|p.P862S|1|0.42|ENSG00000183808|chr8:93733827-93733827|G/A|missense_variant	RBM12B|p.P862S|1|0.42|ENSG00000183808|chr8:93733827-93733827|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.283935546875	2	509.733063	1017.45157	-0.50686	-0.00025836	-3.1876	-0.0016248	-3.6944	-0.0018832	509.73127884857143	69.528	1.2106	69.261	68.87	70.08	-0.26725					53	28	2	0	0	0	0.02435	1	8129	8129		60.972	23.813	1	92023			71550	19035	50107	50190	78177	78177					-0.056454680099932375
SDNLPAPLPGQ	11	Unmodified	_SDNLPAPLPGQ_					0	0	0			REV__nc|ENSG00000115183|Q9C0D5-2|TANC1;REV__ENST00000470074.1_1_2:160076105-160087520:+|nuORF	REV__nc|ENSG00000115183|Q9C0D5-2|TANC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7869873046875	2	554.785296	1107.55604	0.42598	0.00023633	3.3698	0.0018695	3.7958	0.0021059	554.786920184406	82.37	1.5139	82.15	81.785	83.299	-0.22015					115	34	6	0	0	0	0.43676	1	9947	9947		80.455	16.921	1	4118000	+		71551	22174;33146	50108	50191	78178	78178					0.006562337466903045
SDNLQVRGS	9	Unmodified	_SDNLQVRGS_					0	0	0		nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	nc|ENSG00000183873|Q14524-5|SCN5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.23736572265625	2	488.246338	974.478122	-0.41023	-0.00020029	-1.7555	-0.00085711	-2.1657	-0.0010574	488.24506323218174	35.333	0.34191	35.118	34.913	35.255	-0.21555					13	8	2	0	0	0	0.024205	1	2689	2689		63.306	0	1	59332			71552	9288	50109	50192	78179	78179					-0.010137791186480172
SDNLRPVVI	9	Unmodified	_SDNLRPVVI_					0	0	0		nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B	nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.79266357421875	2	506.792924	1011.57129	-1.2623	-0.00063974	-0.35435	-0.00017958	-1.6167	-0.00081933	506.7928567473784	44.161	1.3823	44.161	43.765	45.147	0					125	39	6	0	0	0	0.18915	1	4271	4271		90.777	14.003	1	120750000			71553	2374	50110	50193	78180	78180					0.06597145334569632
SDNNGQSIVY	10	Unmodified	_SDNNGQSIVY_					0	0	0			REV__FBN2|p.D2841N|1|0.25|ENSG00000138829|chr5:128259673-128259673|C/T|missense_variant	REV__FBN2|p.D2841N|1|0.25|ENSG00000138829|chr5:128259673-128259673|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2775268554688	2	548.74891	1095.48327	-0.68805	-0.00037757	2.7885	0.0015302	2.1004	0.0011526	548.7494027416363	34.705	0.60298	34.518	34.157	34.76	-0.18675					19	14	2	0	0	0	0.03519	1	2592	2592		37.812	4.9991	1	72123	+		71554	36025	50111	50194	78181	78181					-0.06065520046695383
SDNPAPLTIL	10	Unmodified	_SDNPAPLTIL_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3	REV__nc|ENSG00000168014|Q4AC94-3|C2CD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7845458984375	2	520.784764	1039.55498	0.26776	0.00013944	-1.2734	-0.00066318	-1.0057	-0.00052373	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	0.96965	2	13663	13663;13674		49.442	8.6634	1	6875800	+		71555	36902	50112	50195	78182;78183	78182					0.03678019377821329
SDNPAPLTIL	10	Unmodified	_SDNPAPLTIL_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3	REV__nc|ENSG00000168014|Q4AC94-3|C2CD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7837524414062	2	520.784764	1039.55498	-0.065214	-3.3962E-05	-0.92283	-0.00048059	-0.98804	-0.00051456	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	1.1088	1	13716	13716		31.53	2.3803	1	7303900	+		71556	36902	50112	50195	78184	78184					0.03678019377821329
SDNQPLGNN	9	Unmodified	_SDNQPLGNN_					0	0	0		nc|ENSG00000173960|P68543-2|UBXN2A;ENSG00000173960|ENST00000309033|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	nc|ENSG00000173960|P68543-2|UBXN2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2796936035156	2	479.71487	957.415188	0.25274	0.00012124	-2.7846	-0.0013358	-2.5318	-0.0012145	479.713386517464	59.224	0.47499	59.309	59.026	59.501	0.085682					20	12	2	0	0	0	0.024288	1	6636	6636		44.377	0	1	121760			71557	8431	50113	50196	78185	78185					-0.06522344906704802
SDNRSNQWHG	10	Unmodified	_SDNRSNQWHG_					0	0	0		ENSG00000235272|ENST00000444122|RAMACL;ENSG00000169612|ENST00000304191|RAMAC	ENSG00000235272|ENST00000444122|RAMACL	ENSG00000235272|ENST00000444122|RAMACL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	599.8428344726562	2	600.760675	1199.5068	-1.285	-0.00077195	-2.1878	-0.0013144	-3.4728	-0.0020863	600.7589355104625	64.6	0.37708	64.337	64.155	64.532	-0.2626					15	9	2	0	0	0	0.03519	1	7599	7599		20.947	0	1	128310			71558	7958	50114	50197	78186	78186					-0.08497661489536767
SDPARERTEL	10	Unmodified	_SDPARERTEL_					0	0	0		ENST00000375784.7_1_6:31704210-31704321:-|nuORF	ENST00000375784.7_1_6:31704210-31704321:-|nuORF	ENST00000375784.7_1_6:31704210-31704321:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	586.8054809570312	2	587.296559	1172.57856	-1.4528	-0.00085324	-1.0467	-0.00061472	-2.4995	-0.001468	587.7972907369046	76.113	1.0722	75.884	75.74	76.813	-0.22843					48	26	2	0	0	0	0.03519	1	9336	9336		36.447	0	1	396820			71559	13169	50115	50198	78187	78187					-0.000821668556682198
SDPFARVFF	9	Unmodified	_SDPFARVFF_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2547607421875	2	543.274367	1084.53418	-0.60373	-0.00032799	2.819	0.0015315	2.2153	0.0012035	543.276873200251	41.821	0.74425	41.589	41.193	41.937	-0.23186					23	19	2	0	0	0	0.024523	1	3685	3685		29.15	11.785	1	147280			71560	3413	50116	50199	78188	78188					-0.004705262112111086
SDPIKRILN	9	Unmodified	_SDPIKRILN_					0	0	0			REV__nc|ENSG00000165383|Q8N456-2|LRRC18	REV__nc|ENSG00000165383|Q8N456-2|LRRC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.31494140625	2	528.314023	1054.61349	0.21443	0.00011328	0.32365	0.00017099	0.53808	0.00028428	528.3143449651923	97.311	1.1074	97.32	96.663	97.77	0.0089111					50	24	3	0	0	0	0.83071	1	12414	12414		37.159	2.9866	1	240920	+		71561	25881	50117	50200	78189	78189					0.08837120742964544
SDPLGRVAGLL	11	Unmodified	_SDPLGRVAGLL_					0	0	0			REV__ENSG00000179399|ENST00000377067|GPC5	REV__ENSG00000179399|ENST00000377067|GPC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3211669921875	2	549.319306	1096.62406	-0.73032	-0.00040118	4.1603	0.0022854	3.43	0.0018842	549.3214684232682	73.737	0.55592	73.466	73.09	73.646	-0.27126					47	14	5	0	0	0	0.67171	1	8968	8968		65.465	7.2355	1	3801400	+		71562	27263	50118	50201	78190	78190					0.0796110339738334
SDPPGQLRSV	10	Unmodified	_SDPPGQLRSV_					0	0	0			REV__nc|ENSG00000198685|O15544|LINC01565	REV__nc|ENSG00000198685|O15544|LINC01565	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7377319335938	2	528.277638	1054.54072	-0.27919	-0.00014749	3.4522	0.0018237	3.173	0.0016762	528.2790058310524	60.377	0.56055	60.18	59.911	60.472	-0.19742					18	13	2	0	0	0	0.03519	1	6752	6752		38.754	9.6041	1	138240	+		71563	37068	50119	50202	78191	78191					0.015633669495173308
SDPQKAWDL	9	Unmodified	_SDPQKAWDL_					0	0	0			REV__ENST00000489120.5_1_2:27346693-27351996:+|nuORF	REV__ENST00000489120.5_1_2:27346693-27351996:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.3007202148438	2	530.258914	1058.50327	-1.211	-0.00064214	1.5433	0.00081832	0.33227	0.00017619	530.2597133205483	29.922	0.37534	30	29.883	30.258	0.078346					16	8	2	0	0	0	0.024477	1	1842	1842		27.882	2.3082	1	61110	+		71564	24303	50120	50203	78192	78192					-0.023637243161147126
SDPRLWQESFW	11	Unmodified	_SDPRLWQESFW_					0	0	0		ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1	ENSG00000276581|ENST00000437823|SPATA31A5	ENSG00000276581|ENST00000437823|SPATA31A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.3059387207031	3	484.229848	1449.66771	-1.0199	-0.00049385	2.9043	0.0014064	1.8845	0.00091252	484.23131526690776	30.89	0.49674	30.89	30.634	31.131	0					27	11	3	0	0	0	0.024801	1	2007	2007		23.378	9.87	1	350990			71565	10382	50121	50204	78193	78193					-0.03913331896137606
SDPVKPDTI	9	Unmodified	_SDPVKPDTI_					0	0	0		ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.25640869140625	2	486.25584	970.497126	-0.40332	-0.00019611	0.45468	0.00022109	0.051365	2.4977E-05	486.2559129640471	53.162	1.4291	53.162	52.513	53.942	0					95	38	4	0	0	0	0.53979	1	5746	5746		56.721	0	1	5329000			71566	2145	50122	50205	78194	78194					0.01069757452387421
SDQIRRLN	8	Unmodified	_SDQIRRLN_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3186950683594	2	501.277972	1000.54139	-0.46271	-0.00023195	3.5438	0.0017764	3.081	0.0015445	501.2794933317935	42.49	0.59071	42.258	41.904	42.494	-0.23186					35	15	3	0	0	0	0.027866	1	3835	3835		12.207	2.5012	1	583720			71567	4652	50123	50206	78195	78195					0.04114206389226638
SDQKEEAEES	10	Unmodified	_SDQKEEAEES_					0	0	0			REV__ENSG00000010270|ENST00000009041|STARD3NL	REV__ENSG00000010270|ENST00000009041|STARD3NL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.2407836914062	2	576.238572	1150.46259	-0.12884	-7.4242E-05	3.6968	0.0021302	3.568	0.002056	576.2407423923137	68.81	1.9237	68.579	68.195	70.119	-0.23048					124	46	5	0	0	0	0.96822	1	7984	7984		49.536	5.1589	1	21653000	+		71568	19900	50124	50207	78196	78196					-0.10662155217050895
SDQTAIDQTA	10	Unmodified	_SDQTAIDQTA_					0	0	0		ENSG00000144031|ENST00000360589|ANKRD53;nc|ENSG00000144031|Q8N9V6-2|ANKRD53;ENST00000483334.1_1_2:71206188-71209754:+|nuORF	ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3157348632812	2	525.240918	1048.46728	0.21307	0.00011192	3.3152	0.0017413	3.5282	0.0018532	525.2426698066618	69.18	0.69731	68.937	68.587	69.284	-0.24277					22	16	2	0	0	0	0.03519	1	8017	8017		39.253	16.21	1	184990			71569	5713	50125	50208	78197	78197					-0.0550122628360441
SDREHPLY	8	Unmodified	_SDREHPLY_					0	0	0		ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.80242919921875	2	508.743431	1015.47231	-0.96967	-0.00049331	0.8785	0.00044693	-0.091171	-4.6382E-05	508.7436804446475	37.527	0.58117	37.318	36.999	37.58	-0.2092					29	14	3	0	0	0	0.027866	1	2958	2958		18.324	0	1	388280			71570	6326	50126	50209	78198	78198					-0.034808776303407285
SDRGHLVL	8	Unmodified	_SDRGHLVL_					0	0	0			REV__nc|ENSG00000251692|Q96A99-2|PTX4	REV__nc|ENSG00000251692|Q96A99-2|PTX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.20819091796875	2	448.751059	895.487565	-0.18016	-8.0846E-05	0.22606	0.00010144	0.045901	2.0598E-05	448.75096839604885	32.042	0.71616	32.054	31.583	32.299	0.011799					29	17	2	0	0	0	0.027866	1	2189	2189		15.642	0	1	69671	+		71571	29035	50127	50210	78199	78199					0.03564033957513857
SDRLFFLDL	9	Unmodified	_SDRLFFLDL_					0	0	0		ENSG00000130304|ENST00000252595|SLC27A1;nc|ENSG00000130304|Q6PCB7-2|SLC27A1;ENST00000594962.5_1_19:17611587-17615418:+|nuORF	ENSG00000130304|ENST00000252595|SLC27A1	ENSG00000130304|ENST00000252595|SLC27A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.2793579101562	2	563.300581	1124.58661	-0.41187	-0.00023201	2.8713	0.0016174	2.4594	0.0013854	563.3019293098811	37.97	0.27821	37.791	37.63	37.908	-0.17929					13	7	2	0	0	0	0.024523	1	3082	3082		15.642	0	1	194450			71572	4409	50128	50211	78200	78200					0.029300121317419325
SDRLLKSLVRL	11	Unmodified	_SDRLLKSLVRL_					0	0	0			REV__nc|ENSG00000090534|P40225-3|THPO	REV__nc|ENSG00000090534|P40225-3|THPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.9144287109375	3	433.94175	1298.80342	0.013194	5.7254E-06	3.2226	0.0013984	3.2358	0.0014042	434.27724795423603	41.657	0.109	41.53	41.452	41.561	-0.12714					4	2	2	0	0	0	0.024755	1	3686	3686		37.6	0.091722	1	26334	+		71573	20878	50129	50212	78201	78201					0.16596987685306885
SDRLQRLLQPK	11	Unmodified	_SDRLQRLLQPK_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2680969238281	3	451.936887	1352.78883	-0.40304	-0.00018215	1.739	0.00078593	1.336	0.00060378	451.93702824973445	21.502	0.72121	21.502	21.146	21.868	0					22	14	2	0	0	0	0.024759	1	626	626		8.7993	0.76496	1	67671			71574	7453	50130	50213	78202	78202					0.12654915537177658
SDRPARDI	8	Unmodified	_SDRPARDI_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.26849365234375	2	465.243598	928.472643	-0.10019	-4.6612E-05	3.5233	0.0016392	3.4231	0.0015926	465.2462234332879	66.42	0.30846	66.138	65.904	66.213	-0.28149					9	7	2	0	0	0	0.027866	1	7865	7865		40.573	0	1	101730			71575	6747	50131	50214	78203	78203					0.0055454208951459805
SDRREAKFSI	10	Unmodified	_SDRREAKFSI_					0	0	0			REV__nc|ENSG00000029534|P16157-2|ANK1	REV__nc|ENSG00000029534|P16157-2|ANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5511474609375	3	403.550921	1207.63093	1.5106	0.00060958	-2.6367	-0.001064	-1.1262	-0.00045447	403.54954971258456	23.457	0.49708	23.266	22.988	23.485	-0.19117					17	11	2	0	0	0	0.03519	1	885	885		14.086	0	1	142200	+		71576	20038	50132	50215	78204	78204					0.035424162779463586
SDRRHRPLP	9	Unmodified	_SDRRHRPLP_					0	0	0			REV__ENST00000480426.5_1_13:114523839-114535869:-|nuORF	REV__ENST00000480426.5_1_13:114523839-114535869:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3192749023438	2	567.317963	1132.62137	0.078115	4.4316E-05	1.6717	0.00094841	1.7499	0.00099272	567.3188657330838	57.304	0.73155	57.139	56.813	57.545	-0.16431					61	19	4	0	0	0	0.53979	1	6401	6401		56.721	8.7615	1	3739600	+		71577	33423	50133	50216	78205	78205					0.06036692783095532
SDRSIYRIKT	10	Unmodified	_SDRSIYRIKT_					0	0	0			REV__nc|ENSG00000284873|A8MZH6|OOSP1	REV__nc|ENSG00000284873|A8MZH6|OOSP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2276916503906	3	413.566571	1237.67788	1.8113	0.0007491	-0.8076	-0.000334	1.0037	0.0004151	413.56615741077314	36.626	0.80178	36.428	36.132	36.934	-0.19829					41	19	3	0	0	0	0.03519	1	2926	2926		16.53	6.426	1	394260	+		71578	37213	50134	50217	78206	78206					0.06855275829070706
SDSEPKPEQA	10	Unmodified	_SDSEPKPEQA_					0	0	0		ENST00000523812.1_1_8:144357822-144358971:+|nuORF	ENST00000523812.1_1_8:144357822-144358971:+|nuORF	ENST00000523812.1_1_8:144357822-144358971:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.2554321289062	2	544.248743	1086.48293	-1.8167	-0.00098873	2.068	0.0011255	0.25128	0.00013676	544.2498140439943	29.971	0.647	29.971	29.611	30.258	0					29	15	2	0	0	0	0.03519	1	1920	1920		23.523	7.0495	1	313450			71579	16051	50135	50218	78207	78207					-0.05684939766547359
SDSFPGGKLV	10	Unmodified	_SDSFPGGKLV_					0	0	0			REV__ENSG00000133742|ENST00000523022|CA1	REV__ENSG00000133742|ENST00000523022|CA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.26763916015625	2	503.763832	1005.51311	0.025598	1.2895E-05	-3.1841	-0.001604	-3.1585	-0.0015911	504.26424869669665	70.889	0.69718	70.899	70.465	71.162	0.010735					19	16	2	0	0	0	0.03519	1	8489	8489		54.776	13.998	1	133340	+		71580	23392	50136	50219	78208	78208					0.010574636892897615
SDSPQTRTA	9	Unmodified	_SDSPQTRTA_					0	0	0		nc|ENSG00000033030|Q6NZY4-2|ZCCHC8;ENSG00000033030|ENST00000633063|ZCCHC8	nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.7322998046875	2	481.73052	961.446488	0.1118	5.3858E-05	3.9843	0.0019194	4.0961	0.0019732	481.73241627706994	57.282	2.588	57.282	56.745	59.333	0					166	70	5	0	0	0	0.11092	1	6470	6470		108.09	5.3142	1	18734000			71581	1018	50137	50220	78209	78209					-0.03577771872608082
SDSYYKSYL	9	Unmodified	_SDSYYKSYL_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2802734375	2	563.258579	1124.50261	-1.2668	-0.00071352	-0.48046	-0.00027062	-1.7472	-0.00098414	563.258322468501	37.798	0.29918	37.58	37.344	37.644	-0.21848					14	7	2	0	0	0	0.024487	1	3058	3058		31.955	0	1	92149	+		71582	20075	50138	50221	78210	78210					-0.05466563755817333
SDTEPEVSL	9	Unmodified	_SDTEPEVSL_					0	0	0			REV__ENSG00000139971|ENST00000267485|ARMH4	REV__ENSG00000139971|ENST00000267485|ARMH4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.72796630859375	2	488.727112	975.439671	0.28229	0.00013796	0.49438	0.00024162	0.77667	0.00037958	488.72725637234737	80.118	0.66717	79.972	79.701	80.368	-0.146					30	15	3	0	0	0	0.70186	1	9598	9598		45.952	7.1458	1	425810	+		71583	23976	50139	50222	78211	78211					-0.049031295438453526
SDTRDLVLD	9	Unmodified	_SDTRDLVLD_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1	ENSG00000008710|ENST00000262304|PKD1	ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2714233398438	2	517.261653	1032.50875	0.093002	4.8106E-05	-2.947	-0.0015244	-2.854	-0.0014763	517.2600503555502	49.3	0.7231	49.118	48.845	49.569	-0.18206					41	18	3	0	0	0	0.024344	1	4932	4932		54.776	19.158	1	660420			71584	850	50140	50223	78212	78212					-0.006200455242833414
SDTYYCMLF	9	Unmodified	_SDTYYCMLF_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.7282104492188	2	571.730286	1141.44602	0.4047	0.00023138	-4.3728	-0.0025001	-3.9681	-0.0022687	571.7277714030618	51.661	1.0013	51.543	51.202	52.203	-0.11876					77	26	4	0	0	0	0.78069	1	5335	5335		40.573	1.3198	1	4679300			71585	981	50141	50224	78213	78213					-0.1190465090833186
SDVAHVESL	9	Unmodified	_SDVAHVESL_					0	0	0		nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.97479248046875	2	478.737814	955.461075	-0.27586	-0.00013207	0.84149	0.00040285	0.56563	0.00027079	478.7382138835771	44.356	0.67933	44.393	44.035	44.715	0.0369					31	19	2	0	0	0	0.024263	1	4112	4112		19.997	0	1	501380			71586	9451	50142	50225	78214	78214					-0.018436997244748454
SDVELTKNI	9	Unmodified	_SDVELTKNI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;BRCA2|p.Y839Ifs*42|1|0.11|ENSG00000139618|chr13:32336864-32336865|-/A|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3260192871094	2	509.774396	1017.53424	0.50863	0.00025928	-0.0098135	-5.0027E-06	0.49881	0.00025428	509.7749103154111	77.94	0.78079	77.729	77.376	78.157	-0.21087					33	18	3	0	0	0	0.024288	1	9615	9615		29.17	4.6509	1	342150			71587	5346	50143	50226	78215	78215					0.026174289981327092
SDVFHGEPEPE	11	Unmodified	_SDVFHGEPEPE_					0	0	0		ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000487682.5_1_1:156909888-156915005:-|nuORF	ENSG00000132694|ENST00000368194|ARHGEF11	ENSG00000132694|ENST00000368194|ARHGEF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2406005859375	3	414.847292	1241.52005	-0.12277	-5.0931E-05	-2.1186	-0.00087888	-2.2413	-0.00092981	414.8462887216772	34.158	0.38968	33.934	33.68	34.07	-0.22412					14	9	2	0	0	0	0.024734	1	2479	2479		21.78	12.569	1	175330			71588	4642	50144	50227	78216	78216					-0.09105268220810103
SDVMRESL	8	Unmodified	_SDVMRESL_					0	0	0		ENSG00000108950|ENST00000592554|FAM20A;ENST00000226094.9_1_17:66533620-66538255:-|nuORF	ENSG00000108950|ENST00000592554|FAM20A	ENSG00000108950|ENST00000592554|FAM20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.7402648925781	2	468.726392	935.438231	-0.60668	-0.00028437	-2.8206	-0.0013221	-3.4273	-0.0016064	468.72497842452054	38.497	0.45395	38.275	38.085	38.539	-0.22149					18	11	2	0	0	0	0.027866	1	3157	3157		18.324	0	1	235390			71589	2950	50145	50228	78217	78217					-0.03207042113592706
SDVSGEANV	9	Unmodified	_SDVSGEANV_					0	0	0			REV__ENSG00000106992|ENST00000644144|AK1	REV__ENSG00000106992|ENST00000644144|AK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.1990051269531	2	439.198522	876.38249	-0.31219	-0.00013711	1.4803	0.00065015	1.1681	0.00051304	439.19916264244574	61.723	0.83958	61.509	61.252	62.091	-0.21375					38	20	4	0	0	0	0.53979	1	6915	6915		56.721	5.3856	1	1091000	+		71590	21650	50146	50229	78218	78218					-0.0606455202955658
SDVSRRHD	8	Unmodified	_SDVSRRHD_					0	0	0			REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D	REV__nc|ENSG00000137872|Q8NFY4-3|SEMA6D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.271728515625	2	486.236304	970.458055	-0.0161	-7.8285E-06	2.4973	0.0012143	2.4812	0.0012065	486.23773435697393	33.129	0.36625	32.929	32.69	33.056	-0.20019					16	8	3	0	0	0	0.027866	1	2340	2340		79.451	16.145	1	99494	+		71591	23794	50147	50230	78219	78219					-0.02835530058621316
SDVTALFLVW	10	Unmodified	_SDVTALFLVW_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.773193359375	2	575.810782	1149.60701	-0.027858	-1.6041E-05	-3.8524	-0.0022182	-3.8802	-0.0022343	575.8084460841033	56.496	0.50152	56.279	56.118	56.619	-0.21607					17	12	2	0	0	0	0.03519	1	6151	6151		20.947	8.7403	1	192790	+		71592	24979	50148	50231	78220	78220					0.038191827915625254
SDVVFILGQ	9	Unmodified	_SDVVFILGQ_					0	0	0			REV__ENST00000463733.5_1_7:127230086-127231350:+|nuORF	REV__ENST00000463733.5_1_7:127230086-127231350:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7613525390625	2	489.26875	976.522947	-1.0582	-0.00051773	1.2041	0.00058913	0.14593	7.1397E-05	489.2693447065486	85.609	1.9365	85.632	84.911	86.847	0.023849					67	45	3	0	0	0	0.023417	1	10826	10826		68.787	0	1	982680	+		71593	19774	50149	50232	78221	78221					0.033746516946848715
SDWLWKII	8	Unmodified	_SDWLWKII_					0	0	0		ENST00000367350.4_1_1:200583518-200584527:-|nuORF	ENST00000367350.4_1_1:200583518-200584527:-|nuORF	ENST00000367350.4_1_1:200583518-200584527:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2931518554688	2	530.794935	1059.57532	0.26883	0.00014269	1.1496	0.00061021	1.4184	0.0007529	530.7944329215632	101.78	0.21799	101.65	101.54	101.76	-0.13156					11	4	3	0	0	0	0.027866	1	12643	12643		25.45	0	1	95595			71594	12855	50150	50233	78222	78222					0.04791234828257984
SDYEEVLIL	9	Unmodified	_SDYEEVLIL_					0	0	0			REV__nc|ENSG00000152270|Q13370-2|PDE3B	REV__nc|ENSG00000152270|Q13370-2|PDE3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8052368164062	2	540.776605	1079.53866	-0.42736	-0.00023111	-3.3216	-0.0017963	-3.749	-0.0020274	540.774639757663	59.804	0.43749	59.604	59.393	59.83	-0.20016					25	11	3	0	0	0	0.024294	1	6834	6834		37.159	0	1	509330	+		71595	24831	50151	50234	78223	78223					0.0020689342106834374
SDYFKLVDLV	10	Unmodified	_SDYFKLVDLV_					0	0	0			REV__ENSG00000180370|ENST00000327134|PAK2	REV__ENSG00000180370|ENST00000327134|PAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2431945800781	3	400.216657	1197.62814	1.7222	0.00068925	-4.3406	-0.0017372	-2.6184	-0.0010479	400.21488254151905	19.622	0.61246	19.622	19.268	19.88	0					20	12	2	0	0	0	0.03519	1	452	452		11.097	0	1	33578	+		71596	27337	50152	50235	78224	78224					0.037231481004027955
SDYFKLVDLV	10	Unmodified	_SDYFKLVDLV_					0	0	0			REV__ENSG00000180370|ENST00000327134|PAK2	REV__ENSG00000180370|ENST00000327134|PAK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	400.216657	1197.62814	0.81322	0.00032546	-9.6309	-0.0038544	-8.8177	-0.003529	400.21287529406413	19.936	0.24523	19.772	19.574	19.82	-0.16446	0.074872	-0.0048269	NaN	11.097	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7238.9	+		71597	27337	50152	50235							0.037231481004027955
SEACDDGGY	9	Unmodified	_SEACDDGGY_					0	0	0			REV__ENSG00000138080|ENST00000380320|EMILIN1	REV__ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.6563415527344	2	458.65309	915.291627	0.56467	0.00025899	1.2009	0.00055079	1.7656	0.00080978	458.6533081630286	59.67	0.54144	59.494	59.199	59.741	-0.1761					27	13	3	0	0	0	0.024517	1	6593	6593		12.959	0.75233	1	350920	+		71598	23815	50153	50236	78225	78225					-0.169407640693521
SEAETKAF	8	Unmodified	_SEAETKAF_					0	0	0		sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	sp|P30119|BTRF1_EBVB9UncharacterizedproteinBTRF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BTRF1PE=3SV=2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7146911621094	2	441.713808	881.413062	-0.088996	-3.9311E-05	2.4219	0.0010698	2.3329	0.0010305	441.71451035524495	31.353	2.4158	31.365	29.884	32.299	0.011797					188	58	5	0	0	0	1.0239	1	2061	2061		33.516	1.5607	1	2374600			71599	37954	50154	50237	78226	78226					-0.032387736445230075
SEAFAVSRHHS	11	Unmodified	_SEAFAVSRHHS_					0	0	0			REV__ENST00000532301.5_1_11:117100562-117101901:-|nuORF	REV__ENST00000532301.5_1_11:117100562-117101901:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	614.322021484375	2	614.296893	1226.57923	0.31201	0.00019166	1.5228	0.00093543	1.8348	0.0011271	614.2975527525756	68.394	0.44026	68.163	67.875	68.316	-0.23048					13	10	2	0	0	0	0.024749	1	7901	7901		19.104	0	1	179810	+		71600	34580	50155	50238	78227	78227					-0.02499327415944208
SEAISPCFVY	10	Unmodified	_SEAISPCFVY_					0	0	0		ENST00000328024.10_1_19:8468676-8469162:+|nuORF	ENST00000328024.10_1_19:8468676-8469162:+|nuORF	ENST00000328024.10_1_19:8468676-8469162:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2600708007812	2	558.257525	1114.5005	0.2176	0.00012148	2.8064	0.0015667	3.024	0.0016882	558.2591032240977	79.482	1.4597	79.263	78.994	80.454	-0.21923					96	34	5	0	0	0	1.0271	1	9559	9559		42.396	3.1433	1	8248200			71601	12297	50156	50239	78228	78228					-0.05217315765275998
SEAITARDS	9	Unmodified	_SEAITARDS_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;MYO9B-ABHD8|1|fusion	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.2353210449219	2	475.232896	948.451239	1.1983	0.00056949	2.2466	0.0010676	3.4449	0.0016371	475.23395340444677	105.09	0.65389	105.09	104.71	105.36	0					49	20	3	0	0	0	0.87448	1	13495	13495		34.173	0.65696	1	364730			71602	2071	50157	50240	78229	78229					-0.02504887729855909
SEAPVDLDASE	11	Unmodified	_SEAPVDLDASE_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.8031005859375	2	566.753858	1131.49316	0.81235	0.0004604	-2.0613	-0.0011682	-1.2489	-0.00070782	566.7524924001025	77.867	0.54681	77.624	77.362	77.909	-0.24232					32	12	3	0	0	0	0.024736	1	9318	9318		22.58	3.4761	1	739100			71603	1631	50158	50241	78230	78230					-0.0673237683199659
SEAQPSSPAR	10	Unmodified	_SEAQPSSPAR_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.708984375	2	515.25162	1028.48869	-0.17489	-9.0111E-05	-4.1956	-0.0021618	-4.3705	-0.0022519	515.2493996331409	29.467	0.75525	29.318	28.912	29.668	-0.14952					22	17	2	0	0	0	0.03519	1	1817	1817		38.754	5.9412	1	153210			71604	1472	50159	50242	78231	78231					-0.024417964642452716
SEAQPSSPAR	10	Unmodified	_SEAQPSSPAR_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.25162	1028.48869	-0.79664	-0.00041047	-3.4387	-0.0017718	-4.2353	-0.0021822	515.2499039061059	29.666	0.46833	29.421	29.185	29.654	-0.24524	0.054685	0.00022293	NaN	43.651	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175780			71605	1472	50159	50242							-0.024417964642452716
SEAQPSSPAR	10	Unmodified	_SEAQPSSPAR_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;SPEG|p.P2584Qfs*35|1|0.25|ENSG00000072195|chr2:219488198-219488198|C/-|frameshift_variant	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.25162	1028.48869	-0.60036	-0.00030933	-3.4845	-0.0017954	-4.0849	-0.0021048	515.2497077595632	29.532	0.46204	29.36	29.156	29.618	-0.17258	-0.0064373	0.00017564	NaN	43.651	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154800			71606	1472	50159	50242							-0.024417964642452716
SEARLGWPS	9	Unmodified	_SEARLGWPS_					0	0	0			REV__ENST00000562988.5_1_16:2047829-2047928:-|nuORF	REV__ENST00000562988.5_1_16:2047829-2047928:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2926940917969	2	501.753798	1001.49304	-0.98862	-0.00049605	-0.38299	-0.00019217	-1.3716	-0.00068822	501.75343496355197	38.977	0.58924	39	38.688	39.277	0.023727					27	15	2	0	0	0	0.024418	1	3283	3283		37.812	4.9991	1	814920	+		71607	35212	50160	50243	78232	78232					-0.0076428725066080005
SEARYKDLY	9	Unmodified	_SEARYKDLY_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant;ENST00000489048.1_1_2:152547165-152552100:-|nuORF	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.7861938476562	2	572.785296	1143.55604	-1.1853	-0.00067892	0.92613	0.00053047	-0.25916	-0.00014844	572.7856901759533	34.037	0.82845	33.862	33.545	34.374	-0.17557					58	20	4	0	0	0	0.59099	1	2449	2449		53.351	0.41475	1	2087000			71608	9199	50161	50244	78233	78233					-0.009997662532896356
SEAVCPLAQ	9	Unmodified	_SEAVCPLAQ_					0	0	0			REV__nc|ENSG00000071539|Q15645-2|TRIP13	REV__nc|ENSG00000071539|Q15645-2|TRIP13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2242431640625	2	459.223485	916.432418	-0.63791	-0.00029294	4.3869	0.0020146	3.749	0.0017216	459.2256023031956	26.277	2.3769	26.041	25.593	27.97	-0.23603					166	59	4	0	0	0	0.50848	1	1411	1411		58.782	2.0609	1	35750000	+		71609	20451	50162	50245	78234	78234					-0.02914140625273376
SEAVCPLAQ	9	Unmodified	_SEAVCPLAQ_					0	0	0			REV__nc|ENSG00000071539|Q15645-2|TRIP13	REV__nc|ENSG00000071539|Q15645-2|TRIP13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2248229980469	2	459.223485	916.432418	-0.30652	-0.00014076	3.9201	0.0018002	3.6135	0.0016594	459.225414960314	26.111	2.5464	25.943	25.502	28.048	-0.16816					199	64	5	0	0	0	0.6504	1	1390	1390		49.442	3.4896	1	47552000	+		71610	20451	50162	50245	78235	78235					-0.02914140625273376
SEAVCPLAQ	9	Unmodified	_SEAVCPLAQ_					0	0	0			REV__nc|ENSG00000071539|Q15645-2|TRIP13	REV__nc|ENSG00000071539|Q15645-2|TRIP13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.22509765625	2	459.223485	916.432418	-0.90546	-0.00041581	4.4126	0.0020264	3.5072	0.0016106	459.2256379392626	26.131	2.5714	25.967	25.457	28.029	-0.16331					204	65	5	0	0	0	0.59099	1	1348	1348		53.351	2.016	1	50655000	+		71611	20451	50162	50245	78236	78236					-0.02914140625273376
SEAWRFPNSS	10	Unmodified	_SEAWRFPNSS_					0	0	0		nc|ENSG00000125618|Q06710-2|PAX8;ENSG00000125618|ENST00000429538|PAX8;ENST00000465084.1_1_2:113976112-113984685:-|nuORF;ENST00000480684.1_1_2:113976112-113977768:-|nuORF	nc|ENSG00000125618|Q06710-2|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	589.819091796875	2	590.772719	1179.53089	-0.77343	-0.00045692	3.1204	0.0018435	2.347	0.0013865	590.7743353480845	69.999	0.66194	69.748	69.441	70.103	-0.25063					37	15	3	0	0	0	0.03519	1	8103	8103		14.137	0	1	489620			71612	4120	50163	50246	78237	78237					-0.05169821055847024
SECDWHKSPQG	11	Unmodified	_SECDWHKSPQG_					0	0	0		nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5	nc|ENSG00000103534|Q6UXY8-2|TMC5	nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	637.2686767578125	2	637.266944	1272.51934	-0.81878	-0.00052178	3.175	0.0020233	2.3562	0.0015016	637.2690837353263	34.68	1.0236	34.494	34.158	35.182	-0.18524					70	25	4	0	0	0	0.98625	1	2538	2538		23.523	4.4192	1	6509800			71613	2514	50164	50247	78238	78238					-0.10602386141499665
SECLALPQ	8	Carbamidomethyl (C)	_SEC(Carbamidomethyl (C))LALPQ_	SEC(1)LALPQ		SEC(77)LALPQ		0	1	0		ENST00000409185.5_1_2:131806798-131807053:-|nuORF	ENST00000409185.5_1_2:131806798-131807053:-|nuORF	ENST00000409185.5_1_2:131806798-131807053:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2255859375	2	459.223485	916.432418	-0.30652	-0.00014076	3.9201	0.0018002	3.6135	0.0016594	459.225414960314	26.111	2.5464	25.943	25.502	28.048	-0.16816					199	64	5	0	0	0	0.59392	1	1287	1287		76.847	13.54	1	47552000			71614	13765	50165	50248	78239	78239	187				-0.029141406252506385
SEDGEEEEAAP	11	Unmodified	_SEDGEEEEAAP_					0	0	0		ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.723388671875	2	581.722755	1161.43096	-0.24616	-0.0001432	0.34666	0.00020166	0.10051	5.8466E-05	581.7229804533407	37.681	0.85903	37.488	37.229	38.088	-0.193					58	23	4	0	0	0	0.69247	1	3047	3047		64.207	0.901	1	4659900			71615	765	50166	50249	78240	78240					-0.1433014797096348
SEDGEEEEAAP	11	Unmodified	_SEDGEEEEAAP_					0	0	0		ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.7230224609375	2	581.722755	1161.43096	-1.735	-0.0010093	2.2785	0.0013254	0.54345	0.00031614	581.7239095315806	37.685	0.73851	37.466	37.192	37.93	-0.2195					58	19	4	0	0	0	0.56861	1	3040	3040		71.877	6.0743	1	3985500			71616	765	50166	50249	78241	78241					-0.1433014797096348
SEDLKMSSE	9	Unmodified	_SEDLKMSSE_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7877197265625	2	513.226422	1024.43829	-1.0922	-0.00056053	3.1725	0.0016282	2.0803	0.0010677	513.2277400851559	24.409	0.92186	24.362	23.656	24.578	-0.047146					26	20	2	0	0	0	0.024466	1	1010	1010		24.519	0	1	30131			71617	1189	50167	50250	78242	78242					-0.07295086904252912
SEDLPPPR	8	Unmodified	_SEDLPPPR_					0	0	0			REV__ENST00000492037.5_1_17:37785754-37792115:+|nuORF	REV__ENST00000492037.5_1_17:37785754-37792115:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.73492431640625	2	455.735074	909.455596	0.37315	0.00017006	-0.24621	-0.00011221	0.12694	5.7849E-05	455.73487218478476	32.464	1.0022	32.271	31.942	32.944	-0.19261					40	23	2	0	0	0	0.91239	1	2230	2230		50.025	4.0726	1	1098200	+		71618	33734	50168	50251	78243	78243					-0.0027537851627812415
SEEAHAYAAG	10	Unmodified	_SEEAHAYAAG_					0	0	0			REV__ENST00000383779.8_1_3:15614715-15637929:-|nuORF	REV__ENST00000383779.8_1_3:15614715-15637929:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7376403808594	2	503.217246	1004.41994	0.087673	4.4119E-05	1.9164	0.00096439	2.0041	0.0010085	503.21805987523794	36.249	0.21803	36.032	35.947	36.165	-0.21661					8	5	2	0	0	0	0.03519	1	2823	2823		16.473	0	1	134260	+		71619	31557	50169	50252	78244	78244					-0.08209460763953302
SEEARVSSF	9	Unmodified	_SEEARVSSF_					0	0	0		ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.24029541015625	2	506.240721	1010.46689	-0.9428	-0.00047728	0.49783	0.00025202	-0.44498	-0.00022527	506.24080210225753	30.159	1.2209	30.233	29.406	30.626	0.074316					67	29	4	0	0	0	0.16468	1	1856	1856		96.19	11.03	1	1014600			71620	11899	50170	50253	78245	78245					-0.037926012127968534
SEEDEDFK	8	Unmodified	_SEEDEDFK_					0	0	0		ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENSG00000102226|ENST00000377107|USP11	ENSG00000102226|ENST00000377107|USP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7378845214844	2	499.701094	997.387635	-1.517	-0.00075806	0.029554	1.4768E-05	-1.4875	-0.00074329	499.69971220367813	33.741	0.43588	33.565	33.226	33.662	-0.17557					13	10	2	0	0	0	0.027866	1	2403	2403		29.15	12.676	1	72488			71621	2394	50171	50254	78246	78246					-0.11116292957603946
SEEERARY	8	Unmodified	_SEEERARY_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2979736328125	2	520.243795	1038.47304	-0.3927	-0.0002043	0.94493	0.0004916	0.55224	0.0002873	520.2440360285163	60.511	0.52784	60.257	59.977	60.504	-0.25373					19	12	2	0	0	0	0.027866	1	6726	6726		16.473	0	1	134190			71622	9118	50172	50255	78247	78247					-0.044660829812755765
SEEFTNSLKTK	11	Unmodified	_SEEFTNSLKTK_					0	0	0		SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant;nc|ENSG00000104611|Q9H788-2|SH2D4A;ENSG00000104611|ENST00000265807|SH2D4A	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	SH2D4A|p.I396Mfs*2|1|0.36|ENSG00000104611|chr8:19393439-19393440|-/TGTAAACATTTCCTCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.225341796875	3	428.554108	1282.6405	-0.49379	-0.00021162	-1.6413	-0.00070337	-2.1351	-0.00091499	428.55373561539767	26.142	0.79247	26.119	25.735	26.527	-0.023088					29	18	2	0	0	0	0.024723	1	1253	1253		19.627	0	1	94988			71623	2582	50173	50256	78248	78248					0.01048139772774448
SEEKLCELL	9	Unmodified	_SEEKLCELL_					0	0	0			REV__nc|ENSG00000160299|O95613-2|PCNT	REV__nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2903442382812	2	532.270632	1062.52671	-0.69098	-0.00036779	0.042632	2.2692E-05	-0.64835	-0.0003451	532.2707069800784	54.336	1.046	54.2	53.837	54.883	-0.13617					42	29	2	0	0	0	0.024447	1	5762	5762		25.574	9.9322	1	249560	+		71624	25309	50174	50257	78249	78249					-0.0020504659376001655
SEEKLGFHY	9	Unmodified	_SEEKLGFHY_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.8182373046875	2	555.266739	1108.51892	1.4611	0.00081129	-1.1636	-0.00064609	0.29751	0.0001652	555.7674301447367	16.809	0.18937	16.655	16.567	16.756	-0.15376					5	3	2	0	0	0	0.024541	1	99	99		7.1934	0	1	14929			71625	18456	50175	50258	78250	78250					-0.030994377990282374
SEELAYLKKN	10	Unmodified	_SEELAYLKKN_					0	0	0		ENSG00000171446|ENST00000301656|KRT27;CON__Q7Z3Y8	ENSG00000171446|ENST00000301656|KRT27	ENSG00000171446|ENST00000301656|KRT27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.8564453125	2	597.821878	1193.6292	-0.19055	-0.00011391	3.8223	0.0022851	3.6318	0.0021712	597.8239928048432	94.439	0.62552	94.316	94.016	94.641	-0.12215					32	14	3	0	0	0	0.03519	1	11605	11605		40.778	12.896	1	298610		+	71626	565	50176	50259	78251	78251					0.040133624693453385
SEELIFSEL	9	Unmodified	_SEELIFSEL_					0	0	0		ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7960815429688	2	533.76878	1065.52301	-1.5232	-0.00081302	3.3261	0.0017754	1.8029	0.00096235	533.7710429578974	91.459	0.55989	91.459	91.256	91.816	0					16	12	2	0	0	0	0.023007	1	11584	11584		87.754	34.403	1	52120			71627	9009	50177	50260	78252	78252					-0.007133930959753343
SEELIKDL	8	Unmodified	_SEELIKDL_					0	0	0		ENST00000577537.5_1_17:20791073-20795564:+|nuORF	ENST00000577537.5_1_17:20791073-20795564:+|nuORF	ENST00000577537.5_1_17:20791073-20795564:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.27178955078125	2	473.758215	945.501877	-0.041535	-1.9678E-05	0.060512	2.8668E-05	0.018977	8.9907E-06	473.7581291189538	47.7	0.96176	47.427	47.084	48.045	-0.27326					52	25	3	0	0	0	0.027866	1	4763	4763		33.516	1.5607	1	1075800			71628	17116	50178	50261	78253	78253					0.026946415951329072
SEELKRLL	8	Unmodified	_SEELKRLL_					0	0	0			REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	MSMS	OPSCC_39_ClassI_Rep-1	1	494.2958984375	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.34	1	106.34	105.84	106.84	0								0	0	0	0.63389	1	13653	13653		45.952	9.5052	1		+		71629	25376	50179	50262	78254	78254					0.08222029477337855
SEELPIKLT	9	Unmodified	_SEELPIKLT_					0	0	0			REV__ENSG00000079101|ENST00000692774|CLUL1	REV__ENSG00000079101|ENST00000692774|CLUL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7090454101562	2	515.294965	1028.57538	-0.52544	-0.00027076	-2.2308	-0.0011495	-2.7562	-0.0014203	515.7942622179564	30.234	0.17247	29.99	29.862	30.035	-0.24415					5	3	2	0	0	0	0.024495	1	1900	1900		42.396	23.036	1	20060	+		71630	20625	50180	50263	78255	78255					0.062231900375991245
SEEPWVLLP	9	Unmodified	_SEEPWVLLP_					0	0	0			REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.8060302734375	2	535.281857	1068.54916	-0.85712	-0.0004588	-1.2681	-0.00067882	-2.1253	-0.0011376	535.2809708812284	80.113	0.46223	80.113	79.953	80.415	0					16	10	2	0	0	0	0.024354	1	9982	9982		47.916	25.956	1	226480	+		71631	31540	50181	50264	78256	78256					0.017629208661446683
SEEQFHLW	8	Unmodified	_SEEQFHLW_					0	0	0			REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|17|1|anti-sense	REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.0720251414922848|0.3327659589692898|1.69|522.0|17|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2469482421875	2	538.245806	1074.47706	-1.9393	-0.0010438	0.42323	0.0002278	-1.516	-0.000816	538.2448062933165	55.948	1.03	55.733	55.168	56.198	-0.21551					75	27	5	0	0	0	0.77775	1	6042	6042		60.972	1.0412	1	10404000	+		71632	36390	50182	50265	78257	78257					-0.057199934875598046
SEERLCPVAHR	11	Unmodified	_SEERLCPVAHR_					0	0	0		SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|33|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2554931640625	3	432.887428	1295.64045	-0.125	-5.4113E-05	-2.1957	-0.00095048	-2.3207	-0.0010046	432.8855192383184	103.85	1.4787	103.72	102.79	104.27	-0.12927					58	39	2	0	0	0	0.024739	1	12856	12856		42.338	20.558	1	47217			71633	38042	50183	50266	78258	78258					0.004458612918142535
SEERLEPK	8	Unmodified	_SEERLEPK_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3085021972656	2	494.258914	986.503274	0.21512	0.00010633	2.7272	0.0013479	2.9423	0.0014543	494.2619902609877	68.586	0.14938	68.605	68.499	68.648	0.018913					5	3	2	0	0	0	0.027866	1	8150	8150		17.365	0	1	30615			71634	6508	50184	50267	78259	78259					0.009482756839133799
SEFACALLY	9	Unmodified	_SEFACALLY_					0	0	0		ENST00000463515.1_1_10:103339212-103340251:-|nuORF;nc|ENSG00000166169|Q9UGP5-2|POLL;ENSG00000166169|ENST00000370162|POLL	ENST00000463515.1_1_10:103339212-103340251:-|nuORF	ENST00000463515.1_1_10:103339212-103340251:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2778015136719	2	508.741511	1015.46847	-0.4217	-0.00021454	3.466	0.0017633	3.0443	0.0015487	508.7430160597456	46.236	0.19162	45.975	45.891	46.083	-0.26118					5	4	2	0	0	0	0.024325	1	4423	4423		50.025	2.1089	1	36207			71635	7515	50185	50268	78260	78260					-0.03864683448409778
SEFLLWLL	8	Unmodified	_SEFLLWLL_					0	0	0		ENST00000514654.5_1_3:130694284-130698131:+|nuORF	ENST00000514654.5_1_3:130694284-130698131:+|nuORF	ENST00000514654.5_1_3:130694284-130698131:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.28680419921875	2	510.791861	1019.56917	-0.41522	-0.00021209	-3.1959	-0.0016324	-3.6111	-0.0018445	510.79003072226953	58.448	0.76355	58.261	58.03	58.793	-0.18705					35	20	3	0	0	0	0.027866	1	6631	6631		39.021	10.767	1	837250			71636	15885	50186	50269	78261	78261					0.06016716596764127
SEFYEPEAL	9	Unmodified	_SEFYEPEAL_					0	0	0		nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1;nc|ENSG00000176783|Q96T51-3|RUFY1	nc|ENSG00000176783|Q96T51-2|RUFY1;nc|ENSG00000176783|Q96T51-3|RUFY1	nc|ENSG00000176783|Q96T51-3|RUFY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2797241210938	2	542.745305	1083.47606	-1.0725	-0.00058211	1.0222	0.00055477	-0.050365	-2.7335E-05	542.74575725547	61.544	0.65867	61.287	61.008	61.667	-0.25725					44	15	4	0	0	0	0.024487	1	6919	6919		24.203	7.7296	1	903930			71637	8669;18543	50187	50270	78262	78262					-0.062342526471411475
SEGGKGKIEV	10	Unmodified	_SEGGKGKIEV_					0	0	0		ENSG00000151131|ENST00000552951|NOPCHAP1	ENSG00000151131|ENST00000552951|NOPCHAP1	ENSG00000151131|ENST00000552951|NOPCHAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2742004394531	2	502.274564	1002.53457	-0.39647	-0.00019914	-0.3691	-0.00018539	-0.76558	-0.00038453	502.2744118269498	48.48	1.9747	48.547	48.191	50.165	0.066795					146	54	5	0	0	0	0.50517	1	4920	4920		87.696	4.946	1	23991000			71638	6180	50188	50271	78263	78263					0.03340848718016787
SEGKPCSPI	9	Unmodified	_SEGKPCSPI_					0	0	0			REV__ENST00000487667.5_1_6:33378511-33378571:+|nuORF	REV__ENST00000487667.5_1_6:33378511-33378571:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.224365234375	2	459.223485	916.432418	-0.90546	-0.00041581	4.4126	0.0020264	3.5072	0.0016106	459.2256379392626	26.131	2.5714	25.967	25.457	28.029	-0.16331					204	65	5	0	0	0	0.80003	1	1373	1373		39.253	4.0521	1	50655000	+		71639	33619	50189	50272	78264	78264					-0.029141406252620072
SEGLFGLHVDF	11	Unmodified	_SEGLFGLHVDF_					0	0	0		ENST00000429878.1_1_2:12006061-12006307:+|nuORF	ENST00000429878.1_1_2:12006061-12006307:+|nuORF	ENST00000429878.1_1_2:12006061-12006307:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.53546142578125	3	407.536389	1219.58734	0.44154	0.00017995	-2.6177	-0.0010668	-2.1761	-0.00088684	407.53513547327213	21.684	1.1974	21.494	21.078	22.276	-0.19072					55	24	4	0	0	0	1.0327	1	709	709		29.551	0	1	465260			71640	14159	50190	50273	78265	78265					-0.013671932191755332
SEGSAVMPGPQ	11	Unmodified	_SEGSAVMPGPQ_					0	0	0			REV__LILRA2|p.P236S|1|0.34|ENSG00000239998|chr19:54575306-54575306|C/T|missense_variant	REV__LILRA2|p.P236S|1|0.34|ENSG00000239998|chr19:54575306-54575306|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.7429809570312	2	530.242406	1058.47026	0.56783	0.00030109	-3.1914	-0.0016922	-2.6236	-0.0013911	530.2406059221765	110.55	1.0768	110.4	109.91	110.98	-0.1469					89	41	3	0	0	0	1.0557	1	13544	13544		23.523	6.1577	1	70861	+		71641	36311	50191	50274	78266	78266					-0.05663674430456922
SEIAFSFCPL	10	Unmodified	_SEIAFSFCPL_					0	0	0			REV__ENST00000479237.5_1_9:131773211-131773688:-|nuORF	REV__ENST00000479237.5_1_9:131773211-131773688:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.7315063476562	2	557.267893	1112.52123	0.37742	0.00021032	3.4251	0.0019087	3.8025	0.002119	557.2696618341018	32.39	0.63666	32.197	31.899	32.536	-0.19261					31	14	3	0	0	0	0.03519	1	2244	2244		27.882	0	1	245210	+		71642	33393	50192	50275	78267	78267					-0.030527253855780145
SEIFKWKSMI	10	Unmodified	_SEIFKWKSMI_					0	0	0		ENST00000558615.5_1_15:49867204-49907386:-|nuORF;nc|ENSG00000166262|Q96M60-2|FAM227B;ENSG00000166262|ENST00000299338|FAM227B	ENST00000558615.5_1_15:49867204-49907386:-|nuORF	ENST00000558615.5_1_15:49867204-49907386:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.56231689453125	3	423.56177	1267.66348	0.0077705	3.2913E-06	0.85339	0.00036146	0.86116	0.00036475	423.56215274094274	17.498	1.8384	17.291	17.014	18.853	-0.20669					73	36	4	0	0	0	1.1081	1	190	190		31.634	1.4951	1	846100			71643	7531	50193	50276	78268	78268					0.04035487356577505
SEILRQIL	8	Unmodified	_SEILRQIL_					0	0	0		ENST00000357727.6_1_7:28452319-28452490:+|nuORF	ENST00000357727.6_1_7:28452319-28452490:+|nuORF	ENST00000357727.6_1_7:28452319-28452490:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.28143310546875	2	486.297842	970.581131	-0.63427	-0.00030844	0.47293	0.00022999	-0.16133	-7.8456E-05	486.29779037840444	56.88	0.75341	56.975	56.749	57.503	0.095306					51	20	3	0	0	0	0.027866	1	6371	6371		31.955	0	1	1169900			71644	12703	50194	50277	78269	78269					0.09466333339958055
SEIPPLPFPS	10	Unmodified	_SEIPPLPFPS_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant;ENST00000560519.1_1_15:64026898-64041594:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2797241210938	2	542.289682	1082.56481	-1.0944	-0.00059347	-2.8692	-0.001556	-3.9636	-0.0021494	542.289165962493	61.506	0.61489	61.248	61.091	61.706	-0.25725					22	14	2	0	0	0	0.03519	1	6919	6919		26.693	4.1133	1	324400			71645	2521	50195	50278	78270	78270					0.026832073831883463
SEKEEILF	8	Unmodified	_SEKEEILF_					0	0	0			REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	REV__nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2591857910156	2	497.758215	993.501877	-0.0068205	-3.3949E-06	3.8981	0.0019403	3.8913	0.0019369	497.76009507537316	20.783	1.2088	20.615	19.816	21.025	-0.16774					48	24	3	0	0	0	0.027866	1	605	605		30.504	0	1	1146200	+		71646	20259	50196	50279	78271	78271					0.00486641595148285
SEKEIIFN	8	Unmodified	_SEKEIIFN_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2576904296875	2	490.258382	978.502212	-0.27758	-0.00013609	2.0379	0.0009991	1.7603	0.00086302	490.2598634062466	102.19	1.7715	102.19	101.86	103.63	0					66	41	2	0	0	0	1.0516	1	13095	13095		29.15	1.2673	1	458520			71647	8590	50197	50280	78272	78272					0.012100613150096251
SEKEVAGGPQ	10	Unmodified	_SEKEVAGGPQ_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.24945068359375	2	501.248546	1000.48254	-0.045881	-2.2998E-05	0.09135	4.5789E-05	0.045468	2.2791E-05	501.2485766471276	104.85	0.58165	104.85	104.54	105.13	0.00096893					47	18	3	0	0	0	0.91678	1	13432	13432		52.937	1.6012	1	312450	+		71648	23370	50198	50281	78273	78273					-0.01768314695743811
SEKGDFIAL	9	Unmodified	_SEKGDFIAL_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2581787109375	2	490.258382	978.502212	-0.11017	-5.4014E-05	3.1041	0.0015218	2.9939	0.0014678	490.26074189152354	102.25	3.064	102.25	100.58	103.64	0.0073471					108	72	4	0	0	0	0.85329	1	13078	13078		35.618	2.1027	1	519180			71649	6538	50199	50282	78274	78274					0.012100613149868877
SEKGSFSLL	9	Unmodified	_SEKGSFSLL_					0	0	0			REV__ENST00000560451.5_1_15:91463647-91463971:+|nuORF	REV__ENST00000560451.5_1_15:91463647-91463971:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.2557678222656	2	484.258382	966.502212	0.20561	9.9567E-05	-0.45945	-0.00022249	-0.25385	-0.00012293	484.25801099603234	46.112	0.76427	46.015	45.741	46.506	-0.096653					51	20	5	0	0	0	0.4752	1	4412	4412		60.972	7.6205	1	4982800	+		71650	35147	50200	50283	78275	78275					0.017620613150143072
SEKNGVPARPG	11	Unmodified	_SEKNGVPARPG_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.29638671875	2	556.296362	1110.57817	0.18915	0.00010522	1.7574	0.00097761	1.9465	0.0010828	556.297280756981	107.21	0.50556	107.21	106.96	107.47	0.0018311					25	13	2	0	0	0	1.018	1	13670	13670		32.812	0.85756	1	150730			71651	7703	50201	50284	78276	78276					0.027304582151373324
SEKPLLLQL	9	Unmodified	_SEKPLLLQL_					0	0	0			REV__ENST00000307712.10_1_14:39561823-39565128:-|nuORF	REV__ENST00000307712.10_1_14:39561823-39565128:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.82080078125	2	520.82115	1039.62775	-0.24749	-0.0001289	0.73849	0.00038462	0.49101	0.00025573	520.8213273418027	100.32	0.48414	100.33	100.1	100.58	0.010109					28	11	4	0	0	0	0.34489	1	12802	12802		69.628	0	1	290650	+		71652	30143	50202	50285	78277	78277					0.10951773171245804
SEKRRRCSKK	10	Unmodified	_SEKRRRCSKK_					0	0	0			REV__MEOX1|p.S149C|1|0.03|ENSG00000005102|chr17:43661089-43661089|G/C|missense_variant	REV__MEOX1|p.S149C|1|0.03|ENSG00000005102|chr17:43661089-43661089|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	639.3627319335938	2	639.364587	1276.71462	-1.4828	-0.00094804	-0.72566	-0.00046396	-2.2085	-0.001412	639.3639199334042	110.13	0.48322	110	109.83	110.31	-0.12525					62	19	4	0	0	0	1.1197	1	13539	13539		20.947	0.95016	1	504380	+		71653	36360	50203	50286	78278	78278					0.08733249173997137
SEKTLQVPQ	9	Unmodified	_SEKTLQVPQ_					0	0	0			REV__nc|ENSG00000136697|Q8WWZ1-2|IL1F10	REV__nc|ENSG00000136697|Q8WWZ1-2|IL1F10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.27099609375	2	515.282389	1028.55022	-0.18046	-9.2988E-05	1.3591	0.00070033	1.1787	0.00060734	515.281599789376	49.084	0.4093	48.902	48.667	49.076	-0.18206					17	10	2	0	0	0	0.024418	1	4913	4913		30.318	8.3578	1	174270	+		71654	23672	50204	50287	78279	78279					0.03709135235044414
SEKVSVIKV	9	Unmodified	_SEKVSVIKV_					0	0	0		FRMPD1|p.V459I|1|0.21|ENSG00000070601|chr9:37735708-37735708|G/A|missense_variant	FRMPD1|p.V459I|1|0.21|ENSG00000070601|chr9:37735708-37735708|G/A|missense_variant	FRMPD1|p.V459I|1|0.21|ENSG00000070601|chr9:37735708-37735708|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7816162109375	2	494.8055	987.596446	0.89237	0.00044155	-1.2748	-0.00063077	-0.38242	-0.00018922	494.8057800037106	65.914	0.22809	65.914	65.837	66.065	0					9	5	2	0	0	0	0.024466	1	7843	7843		31.53	2.3803	1	67839			71655	17660	50205	50288	78280	78280					0.10215200137145075
SEKYFQSI	8	Unmodified	_SEKYFQSI_					0	0	0			REV__nc|ENSG00000156110|P55263-2|ADK;REV__VCL-ADK|13|fusion	REV__VCL-ADK|13|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.24993896484375	2	501.250557	1000.48656	-0.045881	-2.2998E-05	-3.9214	-0.0019656	-3.9672	-0.0019886	501.2485766471276	104.85	0.58165	104.85	104.54	105.13	0.00096893					47	18	3	0	0	0	1.0198	1	13439	13439		34.173	0.65696	1	312450	+		71656	25051;37775	50206	50289	78281	78281					-0.013662252020480992
SELAHLEEDV	10	Unmodified	_SELAHLEEDV_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2;MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.2964477539062	2	571.272218	1140.52988	-0.81327	-0.0004646	2.5717	0.0014691	1.7584	0.0010045	571.2713775007713	61.145	0.69963	60.969	60.714	61.413	-0.1761					63	16	6	0	0	0	0.03519	1	6859	6859		40.778	0	1	1232400			71657	1040	50207	50290	78282	78282					-0.034760802154323756
SELDPYWRS	9	Unmodified	_SELDPYWRS_					0	0	0			REV__ENSG00000128000|ENST00000434248|ZNF780B	REV__ENSG00000128000|ENST00000434248|ZNF780B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.2982177734375	2	576.769645	1151.52474	-0.44351	-0.0002558	-1.5662	-0.00090331	-2.0097	-0.0011591	577.2716277857767	92.696	0.37634	92.574	92.464	92.84	-0.12241					11	8	2	0	0	0	0.024495	1	11434	11434		26.693	0	1	33590	+		71658	22960	50208	50291	78283	78283					-0.04496339287379669
SELEMEVALL	10	Unmodified	_SELEMEVALL_					0	0	0		ENSG00000112539|ENST00000230301|C6orf118	ENSG00000112539|ENST00000230301|C6orf118	ENSG00000112539|ENST00000230301|C6orf118	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.3299560546875	2	567.291565	1132.56858	-0.5352	-0.00030361	1.7793	0.0010094	1.2441	0.00070578	567.2935246107819	89.333	1.1873	89.349	88.406	89.594	0.015907					34	27	2	0	0	0	0.03519	1	11212	11212		47.657	14.845	1	152500			71659	3220	50209	50292	78284	78284					0.007595090947461358
SELESVRLQR	10	Unmodified	_SELESVRLQR_					0	0	0			REV__ENSG00000233436|ENST00000422652|BTBD18	REV__ENSG00000233436|ENST00000422652|BTBD18	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.8366088867188	2	608.835851	1215.65715	-0.10849	-6.605E-05	1.9756	0.0012028	1.8671	0.0011368	608.837007262788	109.69	0.40428	109.68	109.51	109.92	-0.0094986					54	19	4	0	0	0	1.1286	1	13890	13890		25.574	6.4705	1	4069800	+		71660	28907	50210	50293	78285	78285					0.05794685449427561
SELETAMETLI	11	Unmodified	_SELETAMETLI_					0	0	0		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2455139160156	3	412.87245	1235.59552	-0.37368	-0.00015428	2.0894	0.00086264	1.7157	0.00070835	412.87315302902203	31.174	0.35188	30.989	30.784	31.136	-0.18503					12	8	2	0	0	0	0.024727	1	2053	2053		29.551	0	1	50376			71661	6828	50211	50294	78286	78286					-0.01285427084735602
SELETAMETLI	11	Unmodified	_SELETAMETLI_					0	0	0		ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	ENSG00000160678|ENST00000292169|S100A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	412.87245	1235.59552	-0.12152	-5.0173E-05	1.4691	0.00060655	1.3476	0.00055638	412.87288930048317	31.241	0.49571	31.089	30.846	31.342	-0.15231	0.04994	-0.0004004	NaN	43.651	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64139			71662	6828	50211	50294							-0.01285427084735602
SELIPTRDA	9	Unmodified	_SELIPTRDA_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7826232910156	2	501.266739	1000.51892	-1.2648	-0.00063399	-2.9723	-0.0014899	-4.2371	-0.0021239	501.264954891685	44.619	0.20334	44.471	44.39	44.593	-0.1488					6	5	2	0	0	0	0.024495	1	4252	4252		34.173	12.213	1	80647	+		71663	22472	50212	50295	78287	78287					0.01868562200957058
SELKKGRPS	9	Unmodified	_SELKKGRPS_					0	0	0			REV__ENSG00000226174|ENST00000451127|TEX22	REV__ENSG00000226174|ENST00000451127|TEX22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.7720642089844	2	501.290548	1000.56654	-0.045387	-2.2752E-05	3.5316	0.0017703	3.4862	0.0017476	501.29224757205736	55.947	0.99143	55.731	55.205	56.197	-0.21607					58	26	3	0	0	0	0.024495	1	5986	5986		19.997	0	1	1609800	+		71664	28870	50213	50296	78288	78288					0.06628261191804086
SELKKIKK	8	Unmodified	_SELKKIKK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2711181640625	2	487.32386	972.633166	1.5265	0.00074392	-2.0513	-0.00099964	-0.52473	-0.00025571	487.32271622169753	23.081	0.32352	22.89	22.711	23.034	-0.19117					10	6	2	0	0	0	0.027866	1	857	857		12.959	0	1	21130	+		71665	22447	50214	50297	78289	78289					0.14575496753695916
SELKWNET	8	Unmodified	_SELKWNET_					0	0	0			REV__ENST00000439811.1_1_6:112683280-112683757:-|nuORF	REV__ENST00000439811.1_1_6:112683280-112683757:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7736511230469	2	503.745639	1005.47673	0.33733	0.00016993	-0.10836	-5.4588E-05	0.22897	0.00011534	503.74543020660826	58.986	0.63522	58.745	58.502	59.137	-0.24166					32	15	3	0	0	0	0.027866	1	6530	6530		26.693	4.733	1	397420	+		71666	32514	50215	50298	78290	78290					-0.025794132074452136
SELLAFLQD	9	Unmodified	_SELLAFLQD_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3004760742188	2	518.27149	1034.52843	-0.54737	-0.00028369	1.3194	0.00068382	0.77205	0.00040013	518.2719375744138	93.539	0.42228	93.535	93.284	93.706	-0.0042038					17	9	2	0	0	0	0.024021	1	11815	11815		58.782	0	1	80632	+		71667	21973	50216	50299	78291	78291					0.012543304864720994
SELLEIQLLT	10	Unmodified	_SELLEIQLLT_					0	0	0		NIPBL-WDR70|1|fusion;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.2894287109375	2	579.834454	1157.65436	0.58729	0.00034053	-1.1026	-0.00063935	-0.51535	-0.00029882	579.8339455438603	79.485	0.46067	79.239	79.028	79.488	-0.2465					20	10	3	0	0	0	0.03519	1	9483	9483		31.634	9.9485	1	78632			71668	18873	50217	50300	78292	78292					0.08183417271902726
SELLFVVAH	9	Unmodified	_SELLFVVAH_					0	0	0			REV__ENSG00000145439|ENST00000306193|CBR4	REV__ENSG00000145439|ENST00000306193|CBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2415771484375	2	507.784567	1013.55458	-0.46972	-0.00023852	-3.7576	-0.0019081	-4.2273	-0.0021466	507.7826940456462	36.195	0.46313	35.99	35.819	36.282	-0.20518					20	12	2	0	0	0	0.024487	1	2858	2858		31.955	0	1	238420	+		71669	24410	50218	50301	78293	78293					0.04834644448612835
SELLKERSL	9	Unmodified	_SELLKERSL_					0	0	0		ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.8130493164062	2	537.811313	1073.60807	0.10705	5.7574E-05	3.1312	0.001684	3.2382	0.0017416	537.8129786120982	71.292	0.73851	71.292	70.828	71.566	0					56	18	4	0	0	0	0.16638	1	8638	8638		95.815	5.2143	1	3203600			71670	11901	50219	50302	78294	78294					0.07421397160487686
SELLKERSL	9	Unmodified	_SELLKERSL_					0	0	0		ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.8128051757812	2	537.811313	1073.60807	0.048046	2.584E-05	3.0052	0.0016162	3.0532	0.0016421	537.8127813179169	71.647	0.69003	71.359	70.998	71.688	-0.28858					58	17	5	0	0	0	0.26413	1	8653	8653		80.455	2.1908	1	3575700			71671	11901	50219	50302	78295	78295					0.07421397160487686
SELLKERSL	9	Unmodified	_SELLKERSL_					0	0	0		ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.812744140625	2	537.811313	1073.60807	-0.52493	-0.00028232	2.9236	0.0015724	2.3987	0.00129	537.8124378611373	71.398	0.97847	71.408	70.937	71.916	0.010735					68	25	5	0	0	0	0.247	1	8572	8572		82.75	15.257	1	3965800			71672	11901	50219	50302	78296	78296					0.07421397160487686
SELLKERSL	9	Unmodified	_SELLKERSL_					0	0	0		ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.811313	1073.60807	0.39541	0.00021266	-3.6572	-0.0019669	-3.2618	-0.0017542	537.8101420424018	71.254	0.1524	70.965	70.883	71.036	-0.28858	-0.1889	-0.0070979	NaN	95.815	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182790			71673	11901	50219	50302							0.07421397160487686
SELLKERSL	9	Unmodified	_SELLKERSL_					0	0	0		ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.811313	1073.60807	-0.091601	-4.9264E-05	4.1584	0.0022364	4.0668	0.0021872	537.8132911258571	71.568	0.65076	71.293	71.056	71.706	-0.2751	-0.060257	0.0011342	NaN	82.75	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267740			71674	11901	50219	50302							0.07421397160487686
SELLKERSL	9	Unmodified	_SELLKERSL_					0	0	0		ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	ENST00000300289.9_1_15:44059005-44060742:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.811313	1073.60807	-0.2421	-0.0001302	3.1566	0.0016977	2.9145	0.0015675	537.8130151964791	71.468	0.6508	71.206	70.908	71.559	-0.26199	0.05137	0.00023121	NaN	95.815	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212760			71675	11901	50219	50302							0.07421397160487686
SELPMPLLI	9	Unmodified	_SELPMPLLI_					0	0	0		DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000481084.5_1_11:118972203-118972365:-|nuORF;ENST00000472016.1_1_11:118971676-118972365:-|nuORF	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	DPAGT1|p.A183Cfs*9|1|0.24|ENSG00000172269|chr11:119100358-119100359|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.31951904296875	2	506.791004	1011.56745	-0.13588	-6.8862E-05	3.6586	0.0018542	3.5227	0.0017853	506.79293032892195	52.921	0.50847	53.017	52.792	53.3	0.095669					32	13	3	0	0	0	0.024325	1	5634	5634		50.025	0	1	978570			71676	666	50220	50303	78297	78297					0.06213339516500582
SELQRLAR	8	Unmodified	_SELQRLAR_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7858581542969	2	486.78289	971.551228	0.5255	0.00025581	2.0288	0.00098758	2.5543	0.0012434	486.7838211550781	100.82	2.4065	100.7	100.27	102.68	-0.12576					154	60	5	0	0	0	0.96769	1	12724	12724		42.396	0	1	16049000	+		71677	27252	50221	50304	78298	78298					0.06431394394610379
SELRPQSRKL	10	Unmodified	_SELRPQSRKL_					0	0	0			REV__ENST00000455320.5_2_2:190446526-190446742:-|nuORF	REV__ENST00000455320.5_2_2:190446526-190446742:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.2385559082031	3	405.238566	1212.69387	0.80209	0.00032504	-0.54818	-0.00022214	0.25391	0.00010289	405.23838878540363	27	1.0374	27.081	26.758	27.795	0.081293					99	27	5	0	0	0	0.91448	1	1364	1364		53.089	1.5612	1	14939000	+		71678	32778	50222	50305	78299	78299					0.09602982065985088
SELTHYLH	8	Unmodified	_SELTHYLH_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7694396972656	2	500.248349	998.482145	-0.71227	-0.00035631	3.0183	0.0015099	2.306	0.0011536	500.75200215009966	39.211	0.51305	39.046	38.829	39.342	-0.16458					21	13	3	0	0	0	0.027866	1	3299	3299		40.573	11.403	1	475340	+		71679	20518	50223	50306	78300	78300					-0.017156896249616693
SELWPVQFR	9	Unmodified	_SELWPVQFR_					0	0	0			REV__ENST00000464332.5_1_8:144657010-144658430:-|nuORF	REV__ENST00000464332.5_1_8:144657010-144658430:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.7235717773438	2	581.306198	1160.59784	-1.6295	-0.00094725	-3.0184	-0.0017546	-4.6479	-0.0027018	581.3007954790125	38.009	0.28422	37.788	37.613	37.898	-0.22149					15	7	3	0	0	0	0.024477	1	3067	3067		44.117	3.5442	1	107090	+		71680	32969	50224	50307	78301	78301					0.023968342258967823
SENDKKAGR	9	Unmodified	_SENDKKAGR_					0	0	0		ENST00000479637.1_1_7:154664335-154668756:+|nuORF	ENST00000479637.1_1_7:154664335-154668756:+|nuORF	ENST00000479637.1_1_7:154664335-154668756:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.76177978515625	2	502.759612	1003.50467	1.5196	0.000764	2.2181	0.0011152	3.7377	0.0018792	502.76066080908396	63.412	1.0349	63.466	63.126	64.161	0.054104					89	28	4	0	0	0	0.31037	1	7344	7344		74.255	2.3776	1	7960200			71681	15175	50225	50308	78302	78302					0.003059097726691107
SENDYQALT	9	Unmodified	_SENDYQALT_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.732666015625	2	520.730186	1039.44582	-0.07244	-3.7722E-05	-1.2502	-0.00065104	-1.3227	-0.00068876	520.7289558371833	57.246	0.60744	57.081	56.71	57.318	-0.16431					26	16	2	0	0	0	0.0245	1	6394	6394		22.58	0	1	194280	+		71682	21276	50226	50309	78303	78303					-0.07232611312338122
SENKQPANPH	10	Unmodified	_SENKQPANPH_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2702026367188	2	561.270344	1120.52613	-0.77983	-0.00043769	-0.9548	-0.0005359	-1.7346	-0.0009736	561.2702975131176	26.275	3.302	26.039	25.762	29.064	-0.23603					301	81	8	0	0	0	1.0508	1	1384	1384		39.253	0	1	235830000			71683	7347	50227	50310	78304	78304					-0.029307051986279475
SEPAIKMIY	9	Unmodified	_SEPAIKMIY_					0	0	0			REV__ENSG00000168484|ENST00000679463|SFTPC	REV__ENSG00000168484|ENST00000679463|SFTPC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2322998046875	2	526.27826	1050.54197	0.41892	0.00022047	-0.8987	-0.00047297	-0.47979	-0.0002525	526.2760509576606	50.137	0.48929	49.956	49.864	50.353	-0.18071					15	12	3	0	0	0	0.02435	1	5118	5118		51.335	3.4199	1	196930	+		71684	26263	50228	50311	78305	78305					0.018718649940637988
SEPAIKMIY	9	Unmodified	_SEPAIKMIY_					0	0	0			REV__ENSG00000168484|ENST00000679463|SFTPC	REV__ENSG00000168484|ENST00000679463|SFTPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.27826	1050.54197	-0.023237	-1.2229E-05	-1.9114	-0.0010059	-1.9346	-0.0010181	526.2757643493153	50.022	0.26789	49.916	49.82	50.088	-0.10558	-0.019931	-0.00048812	NaN	51.335	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540240	+		71685	26263	50228	50311							0.018718649940637988
SEPAKVAKP	9	Unmodified	_SEPAKVAKP_					0	0	0			REV__ENSG00000179008|ENST00000321731|C14orf39	REV__ENSG00000179008|ENST00000321731|C14orf39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2301940917969	2	463.768917	925.523281	0.12774	5.9241E-05	1.3238	0.00061394	1.4515	0.00067318	463.7693103135597	37.401	0.6243	37.337	36.828	37.452	-0.063389					21	16	2	0	0	0	0.024427	1	3035	3035		34.173	14.813	1	153230	+		71686	27226	50229	50312	78306	78306					0.05754071414514783
SEPELPLQK	9	Unmodified	_SEPELPLQK_					0	0	0			REV__ENST00000527764.1_1_1:36622018-36637187:+|nuORF	REV__ENST00000527764.1_1_1:36622018-36637187:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7843017578125	2	520.784764	1039.55498	-0.95638	-0.00049807	-0.21074	-0.00010975	-1.1671	-0.00060781	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	0.90698	1	13253	13253		31.955	1.4512	1	3485700	+		71687	22311	50230	50313	78307	78307					0.036780193777985914
SEPEYMEEV	9	Unmodified	_SEPEYMEEV_					0	0	0		ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.8184814453125	2	556.726255	1111.43796	-0.67203	-0.00037414	-1.8323	-0.0010201	-2.5043	-0.0013942	556.7249292686498	60.486	0.56424	60.232	59.94	60.504	-0.25373					24	13	2	0	0	0	0.024405	1	6747	6747		20.947	5.3051	1	321390			71688	3565	50231	50314	78308	78308					-0.11330506624108239
SEPEYMEEV	9	Unmodified	_SEPEYMEEV_					0	0	0		ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	556.726255	1111.43796	-0.54047	-0.00030089	-1.6492	-0.00091817	-2.1897	-0.0012191	556.7250707708689	60.327	0.59752	60.151	59.885	60.483	-0.1761	0.062291	0.0010142	NaN	20.947	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197170			71689	3565	50231	50314							-0.11330506624108239
SEPFKRLN	8	Unmodified	_SEPFKRLN_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2973937988281	2	495.771991	989.529429	0.65529	0.00032487	-1.583	-0.00078481	-0.92771	-0.00045993	495.7720557061083	54.091	0.38522	54.189	54.041	54.426	0.098015					13	10	2	0	0	0	0.027866	1	5854	5854		55.504	0	1	209600	+		71690	36496	50232	50315	78309	78309					0.034245896460333825
SEPHPHLGV	9	Unmodified	_SEPHPHLGV_					0	0	0		FAT1|p.D3693G|1|0.24|ENSG00000083857|chr4:186603448-186603448|T/C|missense_variant	FAT1|p.D3693G|1|0.24|ENSG00000083857|chr4:186603448-186603448|T/C|missense_variant	FAT1|p.D3693G|1|0.24|ENSG00000083857|chr4:186603448-186603448|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.74749755859375	2	486.748516	971.482479	0.78937	0.00038422	-3.4032	-0.0016565	-2.6138	-0.0012723	486.74701300065806	106.52	0.28253	106.36	106.16	106.44	-0.16132					19	13	2	0	0	0	0.78069	1	13231	13231		40.573	1.7665	1	177420			71691	17638	50233	50316	78310	78310					-0.004402699050842784
SEPNLAYQV	9	Unmodified	_SEPNLAYQV_					0	0	0			REV__ENSG00000084774|ENST00000264705|CAD	REV__ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.28753662109375	2	510.753464	1019.49238	0.12951	6.6146E-05	3.6933	0.0018864	3.8229	0.0019525	510.7545020628606	58.416	0.40842	58.416	58.159	58.568	0					16	10	2	0	0	0	0.024477	1	6632	6632		44.117	17.424	1	487490	+		71692	20743	50234	50317	78311	78311					-0.01659126690390167
SEPRCYGLF	9	Unmodified	_SEPRCYGLF_					0	0	0			REV__ENST00000216190.12_1_22:36914832-36914898:-|nuORF	REV__ENST00000216190.12_1_22:36914832-36914898:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.2846069335938	2	536.250034	1070.48552	-2.2964	-0.0012314	4.4743	0.0023993	2.1779	0.0011679	536.2524645141469	38.262	0.63427	38.289	38.057	38.691	0.027275					27	17	2	0	0	0	0.024436	1	3118	3118		16.473	0	1	399770	+		71693	29311	50235	50318	78312	78312					-0.04690762842596996
SEPVGLGPQL	10	Unmodified	_SEPVGLGPQL_					0	0	0		ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7709655761719	2	498.771657	995.528761	0.43234	0.00021564	-1.7911	-0.00089334	-1.3587	-0.0006777	498.77066535088994	104.85	1.772	104.85	104.16	105.93	0					146	51	5	0	0	0	0.941	1	13560	13560		51.335	1.3109	1	5167900			71694	14588	50236	50319	78313	78313					0.030817502063428037
SEPVGLGPQL	10	Unmodified	_SEPVGLGPQL_					0	0	0		ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	ENST00000455833.6_2_1:19232893-19233121:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.77105712890625	2	498.771657	995.528761	-0.00883	-4.4042E-06	-1.3272	-0.00066195	-1.336	-0.00066636	498.77089615614955	104.88	1.8232	104.88	104.27	106.1	0.00097656					165	59	5	0	0	0	1.0142	1	13409	13409		44.117	3.5442	1	5457500			71695	14588	50236	50319	78314	78314					0.030817502063428037
SEPYKNKPQP	10	Unmodified	_SEPYKNKPQP_					0	0	0		ENST00000370069.5_1_20:62219030-62219531:-|nuORF	ENST00000370069.5_1_20:62219030-62219531:-|nuORF	ENST00000370069.5_1_20:62219030-62219531:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.76318359375	2	594.306395	1186.59824	0.11773	6.997E-05	-3.9749	-0.0023623	-3.8572	-0.0022923	594.8075670651016	60.126	0.14416	59.929	59.802	59.947	-0.19742					5	3	2	0	0	0	0.03519	1	6679	6679		31.53	14.812	1	58189			71696	12946	50237	50320	78315	78315					0.012402091550939076
SEQGQRQGKGP	11	Unmodified	_SEQGQRQGKGP_					0	0	0			REV__ENST00000395148.6_1_2:202001787-202001970:+|nuORF	REV__ENST00000395148.6_1_2:202001787-202001970:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	586.294921875	2	586.29435	1170.57415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.48	1	107.36	106.86	107.86	-0.1238								0	0	0	1.0998	1	13365	13365		36.447	0	1		+		71697	31689	50238	50321	78316	78316					-0.004316312785704213
SEQNQRLLDQ	10	Unmodified	_SEQNQRLLDQ_					0	0	0		ENSG00000135127|ENST00000548673|BICDL1;nc|ENSG00000135127|Q6ZP65|BICDL1	ENSG00000135127|ENST00000548673|BICDL1	ENSG00000135127|ENST00000548673|BICDL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.56280517578125	3	410.873953	1229.60003	-0.55128	-0.00022651	-2.4484	-0.001006	-2.9997	-0.0012325	410.8731652656687	33.252	0.75925	33.086	32.436	33.195	-0.16565					29	18	2	0	0	0	0.03519	1	2299	2299		19.263	3.9296	1	84048			71698	4864	50239	50322	78317	78317					-0.005587818269304989
SEQPLWIE	8	Unmodified	_SEQPLWIE_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2489929199219	2	501.250557	1000.48656	0.28832	0.00014452	-4.253	-0.0021318	-3.9647	-0.0019873	501.2483733429364	104.84	0.69293	104.84	104.5	105.19	0					54	22	3	0	0	0	0.99042	1	13479	13479		38.806	2.3594	1	339730			71699	9037	50240	50323	78318	78318					-0.013662252020367305
SERLGESLL	9	Unmodified	_SERLGESLL_					0	0	0			REV__nc|ENSG00000101082|Q9H6Q3-3|SLA2	REV__nc|ENSG00000101082|Q9H6Q3-3|SLA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29052734375	2	502.274564	1002.53457	0.65431	0.00032864	4.1291	0.0020739	4.7834	0.0024026	502.2766203294587	85.594	1.0649	85.444	85.03	86.095	-0.14967					38	24	2	0	0	0	0.024412	1	10467	10467		24.203	8.5609	1	613640	+		71700	21181	50241	50324	78319	78319					0.03340848718016787
SERLQQLW	8	Unmodified	_SERLQQLW_					0	0	0			REV__nc|ENSG00000114026|O15527-8|OGG1	REV__nc|ENSG00000114026|O15527-8|OGG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2800903320312	2	530.282723	1058.55089	-0.85756	-0.00045475	0.73173	0.00038802	-0.12584	-6.6729E-05	530.2830288664173	55.995	1.0846	55.839	55.211	56.295	-0.15655					60	28	3	0	0	0	0.91956	1	6036	6036		49.442	0	1	3206700	+		71701	22101	50242	50325	78320	78320					0.023959746747550525
SERLRTLPA	9	Unmodified	_SERLRTLPA_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.2957763671875	2	521.803823	1041.59309	0.4485	0.00023403	1.9868	0.0010367	2.4353	0.0012708	521.8033380728158	103.9	0.29015	103.73	103.52	103.81	-0.16791					9	6	2	0	0	0	0.024541	1	12904	12904		6.3127	0	1	26534			71702	4358	50243	50326	78321	78321					0.07395950083150638
SERRPLLS	8	Unmodified	_SERRPLLS_					0	0	0		ENST00000372324.5_1_1:44444922-44446927:+|nuORF;ENST00000497866.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2781066894531	2	479.277441	956.540328	0.70366	0.00033725	0.44942	0.0002154	1.1531	0.00055264	479.27737502520233	96.231	2.3544	96.108	95.378	97.732	-0.12305					131	53	5	0	0	0	1.0198	1	11939	11939		34.173	0.65696	1	1695100			71703	13033	50244	50327	78322	78322					0.06031992020336929
SERYFCKND	9	Unmodified	_SERYFCKND_					0	0	0			REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	REV__B4GALNT4|p.Q820Lfs*150|1|0.32|ENSG00000182272|chr11:379670-379686|CCAGGACGTGATGGTTC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.806396484375	2	581.253305	1160.49206	-0.7419	-0.00043123	-2.2836	-0.0013274	-3.0255	-0.0017586	581.2519036555341	49.793	0.48882	49.514	49.24	49.729	-0.27977					19	12	2	0	0	0	0.024539	1	5035	5035		14.865	8.9438	1	203900	+		71704	19195	50245	50328	78323	78323					-0.0817686968189264
SESCDCHH	8	Unmodified	_SESCDCHH_					0	0	0			REV__ENST00000379540.7_1_9:33370017-33370257:+|nuORF	REV__ENST00000379540.7_1_9:33370017-33370257:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.147452	916.28035	-0.92585	-0.0004251	1.1255	0.00051678	0.19968	9.1682E-05	459.1476333121886	26.189	0.27631	26.026	25.922	26.199	-0.16331					11	8	2	0	0	0	0.027866	1	1288	1288		35.201	15.841	1	69952	+		71705	31435	50246	50329	78324	78324					-0.18113864644476507
SESDLNQPTY	10	Unmodified	_SESDLNQPTY_					0	0	0			REV__ENSG00000125686|ENST00000300651|MED1	REV__ENSG00000125686|ENST00000300651|MED1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7783203125	2	577.254025	1152.4935	-0.57406	-0.00033138	1.546	0.00089244	0.97195	0.00056106	577.254635780316	46.494	0.63989	46.233	45.93	46.569	-0.26118					39	16	3	0	0	0	0.03519	1	4512	4512		42.864	10.052	1	1079700	+		71706	22834	50247	50330	78325	78325					-0.0766495711211519
SESKSLIPD	9	Unmodified	_SESKSLIPD_					0	0	0			REV__ASPM|p.K556E|1|0.45|ENSG00000066279|chr1:197142586-197142586|T/C|missense_variant	REV__ASPM|p.K556E|1|0.45|ENSG00000066279|chr1:197142586-197142586|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7637023925781	2	488.253297	974.492041	-0.30555	-0.00014919	1.5094	0.00073695	1.2038	0.00058777	488.2539068347485	42.532	0.91084	42.409	42.076	42.987	-0.12299					33	23	2	0	0	0	0.024466	1	3929	3929		24.519	0	1	324680	+		71707	19178	50248	50331	78326	78326					0.0037745358977190335
SESKSLIPD	9	Unmodified	_SESKSLIPD_					0	0	0			REV__ASPM|p.K556E|1|0.45|ENSG00000066279|chr1:197142586-197142586|T/C|missense_variant	REV__ASPM|p.K556E|1|0.45|ENSG00000066279|chr1:197142586-197142586|T/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.253297	974.492041	-0.28941	-0.00014131	1.5047	0.00073466	1.2153	0.00059336	488.25385627788125	42.648	0.65031	42.416	42.155	42.806	-0.23186	-0.017641	5.4984E-05	NaN	31.53	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361120	+		71708	19178	50248	50331							0.0037745358977190335
SESKSLIPD	9	Unmodified	_SESKSLIPD_					0	0	0			REV__ASPM|p.K556E|1|0.45|ENSG00000066279|chr1:197142586-197142586|T/C|missense_variant	REV__ASPM|p.K556E|1|0.45|ENSG00000066279|chr1:197142586-197142586|T/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	488.253297	974.492041	-0.18924	-9.2398E-05	1.2963	0.00063291	1.107	0.00054051	488.2537258155808	42.702	0.69161	42.476	42.181	42.873	-0.22597	0.04241	-0.00014852	NaN	31.53	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405320	+		71709	19178	50248	50331							0.0037745358977190335
SESMNCSHA	9	Unmodified	_SESMNCSHA_					0	0	0		ENST00000592182.5_1_2:179393182-179402334:+|nuORF;ENST00000431259.6_1_2:179396142-179402334:+|nuORF	ENST00000592182.5_1_2:179393182-179402334:+|nuORF	ENST00000592182.5_1_2:179393182-179402334:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2378845214844	2	483.176209	964.337865	-0.9516	-0.00045979	-0.88741	-0.00042878	-1.839	-0.00088857	483.1758352812943	40.888	0.14384	40.658	40.589	40.733	-0.2303					5	3	2	0	0	0	0.024541	1	3555	3555		20.947	7.1716	1	47356			71710	14183	50249	50332	78327	78327					-0.14573022438901262
SESSKSVFLL	10	Unmodified	_SESSKSVFLL_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.2594604492188	2	548.797872	1095.58119	-0.46656	-0.00025605	1.2141	0.00066631	0.74756	0.00041026	548.7984896902011	39.873	0.53114	39.724	39.473	40.004	-0.1497					19	13	2	0	0	0	0.03519	1	3442	3442		27.882	8.5223	1	157780	+		71711	26356	50250	50333	78328	78328					0.037222885493065405
SESTWTEAMR	10	Unmodified	_SESTWTEAMR_					0	0	0			REV__ENST00000603037.2_2_X:73423695-73423740:-|nuORF	REV__ENST00000603037.2_2_X:73423695-73423740:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	598.81103515625	2	599.26387	1196.51319	-1.2658	-0.00075854	-2.5614	-0.001535	-3.8272	-0.0022935	599.2621711946359	44.658	0.83979	44.558	44.244	45.084	-0.099445					44	21	3	0	0	0	0.03519	1	4202	4202		44.377	6.5657	1	547530	+		71712	35892	50251	50334	78329	78329					-0.07720904373059057
SETEGSVFMET	11	Unmodified	_SETEGSVFMET_					0	0	0		ENSG00000155115|ENST00000329970|GTF3C6	ENSG00000155115|ENST00000329970|GTF3C6	ENSG00000155115|ENST00000329970|GTF3C6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2484130859375	3	406.172788	1215.49653	-0.072234	-2.9339E-05	4.3657	0.0017732	4.2935	0.0017439	406.17419890336146	87.91	0.64566	87.773	87.502	88.148	-0.13744					21	15	2	0	0	0	0.024735	1	10746	10746		5.4129	0	1	89202			71713	6456	50252	50335	78330	78330					-0.1025945004962523
SETHPPEVAL	10	Unmodified	_SETHPPEVAL_					0	0	0		ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.2901000976562	2	540.272021	1078.52949	-1.3376	-0.00072265	-0.077593	-4.1921E-05	-1.4152	-0.00076457	540.2732304948611	66.466	0.33939	66.221	66.011	66.351	-0.24517					12	8	2	0	0	0	0.03519	1	7636	7636		27.882	6.9353	1	219700			71714	3873	50253	50336	78331	78331					-0.006634551446268233
SETNTDQSVSF	11	Unmodified	_SETNTDQSVSF_					0	0	0			REV__ENSG00000177483|ENST00000316997|RBM44	REV__ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	606.827880859375	2	607.762214	1213.50988	-0.51261	-0.00031154	3.745	0.0022761	3.2324	0.0019645	607.7643030606478	17.682	0.34885	17.476	17.265	17.614	-0.20669					10	6	2	0	0	0	0.024727	1	214	214		41.427	7.2541	1	48213	+		71715	27118	50254	50337	78332	78332					-0.08833875946061198
SETNTDQSVSF	11	Unmodified	_SETNTDQSVSF_					0	0	0			REV__ENSG00000177483|ENST00000316997|RBM44	REV__ENSG00000177483|ENST00000316997|RBM44	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	607.762214	1213.50988	3.9782	0.0024178	-0.51824	-0.00031497	3.4599	0.0021028	607.7621206780691	17.702	0.39642	17.451	17.322	17.719	-0.25049	-0.018493	-0.0031031	NaN	46.457	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44945	+		71716	27118	50254	50337							-0.08833875946061198
SETPHALTV	9	Unmodified	_SETPHALTV_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.30560302734375	2	477.748182	953.481811	0.0027735	1.325E-06	2.8029	0.0013391	2.8057	0.0013404	477.75010187902006	91.355	0.33533	91.342	91.197	91.533	-0.012383					12	7	2	0	0	0	0.024405	1	11551	11551		27.882	0	1	52859			71717	5096	50255	50338	78333	78333					0.003208906551662949
SETPKTLLGG	10	Unmodified	_SETPKTLLGG_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.29052734375	2	501.776939	1001.53933	0.59291	0.00029751	-2.6552	-0.0013323	-2.0623	-0.0010348	502.2767210498297	86.231	0.39315	86.089	85.798	86.191	-0.14217					11	8	2	0	0	0	0.03519	1	10467	10467		31.53	0	1	176660	+		71718	27091	50256	50339	78334	78334					0.03861732860787015
SETSSLSLV	9	Unmodified	_SETSSLSLV_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	461.2850341796875	2	461.740022	921.465492	0.29042	0.0001341	2.061	0.00095165	2.3514	0.0010858	461.7408782151235	23.232	0.55993	23.03	22.593	23.153	-0.20193					16	11	2	0	0	0	0.024436	1	917	917		23.042	0	1	27403			71719	1690	50257	50340	78335	78335					0.0016176469845277097
SETVRPYLL	9	Unmodified	_SETVRPYLL_					0	0	0		ENST00000547216.1_1_12:57871100-57871594:-|nuORF;ENST00000551000.1_1_12:57871100-57871616:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.8265991210938	2	539.300581	1076.58661	-1.0373	-0.0005594	-0.43263	-0.00023332	-1.4699	-0.00079272	539.3008258218462	55.232	0.56083	55.086	54.873	55.434	-0.14609					32	15	3	0	0	0	0.024261	1	5884	5884		54.776	7.119	1	390440			71720	16524	50258	50341	78336	78336					0.05138012131760661
SETVRPYLL	9	Unmodified	_SETVRPYLL_					0	0	0		ENST00000547216.1_1_12:57871100-57871594:-|nuORF;ENST00000551000.1_1_12:57871100-57871616:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	ENST00000547216.1_1_12:57871100-57871594:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.8267211914062	2	539.300581	1076.58661	-0.47628	-0.00025686	-0.8813	-0.00047529	-1.3576	-0.00073215	539.3001348246129	55.332	0.53853	55.101	54.855	55.394	-0.23087					27	15	2	0	0	0	0.024261	1	5901	5901		54.776	21.964	1	303110			71721	16524	50258	50341	78337	78337					0.05138012131760661
SEVERRAAN	9	Unmodified	_SEVERRAAN_					0	0	0			REV__nc|ENSG00000127191|Q12933-4|TRAF2	REV__nc|ENSG00000127191|Q12933-4|TRAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2677001953125	2	516.265062	1030.51557	-0.36468	-0.00018827	3.627	0.0018725	3.2623	0.0016842	516.2669071432356	31.336	1.8481	31.348	30.334	32.182	0.011799					139	44	5	0	0	0	0.53979	1	2090	2090		56.721	3.7844	1	6582100	+		71722	22921	50259	50342	78338	78338					0.001533121469492471
SEVIVTVKV	9	Unmodified	_SEVIVTVKV_					0	0	0		ENST00000480937.5_1_1:25678121-25683295:+|nuORF;ENST00000491936.5_1_1:25664838-25679420:+|nuORF	ENST00000480937.5_1_1:25678121-25683295:+|nuORF	ENST00000480937.5_1_1:25678121-25683295:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2819519042969	2	487.30005	972.585547	-0.0091055	-4.4371E-06	-1.4165	-0.00069026	-1.4256	-0.00069469	487.29934490811036	80.983	0.68594	80.745	80.369	81.055	-0.23784					20	16	2	0	0	0	0.024261	1	9674	9674		64.207	20.09	1	150320			71723	15218	50260	50343	78339	78339					0.09815797762860257
SEVLINSKL	9	Unmodified	_SEVLINSKL_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant;ENST00000558959.5_1_15:50271874-50336868:-|nuORF	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.29229736328125	2	501.795132	1001.57571	0.23322	0.00011703	4.1568	0.0020859	4.39	0.0022029	501.7970364410905	40.129	2.01	40.129	39.006	41.016	0					122	56	3	0	0	0	0.023837	1	3335	3335		54.776	7.119	1	1165600			71724	2538	50261	50344	78340	78340					0.07498609757476515
SEVLINSKL	9	Unmodified	_SEVLINSKL_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant;ENST00000558959.5_1_15:50271874-50336868:-|nuORF	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.795132	1001.57571	-0.58189	-0.00029199	5.0624	0.0025403	4.4805	0.0022483	501.7974649138966	40.371	1.9059	40.394	39.348	41.254	0.023006	0.17289	0.00042507	NaN	54.776	110	53	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1275200			71725	2538	50261	50344							0.07498609757476515
SEVLMGGLAQ	10	Unmodified	_SEVLMGGLAQ_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2926940917969	2	502.757692	1003.50083	-0.8165	-0.0004105	0.48095	0.0002418	-0.33555	-0.0001687	502.75763318337385	39.488	1.4094	39.511	38.568	39.978	0.023727					94	38	3	0	0	0	0.03519	1	3283	3283		58.782	7.5893	1	1158400	+		71726	26319	50262	50345	78341	78341					-0.0007789604541130757
SEVLTHIK	8	Unmodified	_SEVLTHIK_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7691955566406	2	463.768917	925.523281	2.0339	0.00094328	-1.9747	-0.00091582	0.05922	2.7465E-05	463.76786687097905	63.38	1.4551	63.434	62.888	64.343	0.054104					80	39	4	0	0	0	0.44658	1	7352	7352		90.777	0	1	4354700	+		71727	23290	50263	50346	78342	78342					0.05754071414514783
SEVLVVVRA	9	Unmodified	_SEVLVVVRA_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77178955078125	2	486.297842	970.581131	0.10065	4.8945E-05	-0.6754	-0.00032845	-0.57476	-0.0002795	486.2974033074545	67.885	1.4091	67.885	67.568	68.977	0					98	36	5	0	0	0	0.023817	1	8078	8078		71.296	10.324	1	2574400	+		71728	21740	50264	50347	78343	78343					0.09466333339946686
SEVNFFKV	8	Unmodified	_SEVNFFKV_					0	0	0		ENST00000606372.5_1_1:2263981-2323005:-|nuORF;nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.76983642578125	2	485.255643	968.496732	-0.84778	-0.00041139	-3.0844	-0.0014967	-3.9322	-0.0019081	485.25600541620105	35.362	0.18609	35.362	35.306	35.492	0					6	4	2	0	0	0	0.027866	1	2733	2733		17.365	0	1	32030			71729	17563	50265	50348	78344	78344					0.011223825231923001
SEVRYQSGR	9	Unmodified	_SEVRYQSGR_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.2788696289062	2	541.272887	1080.53122	2.9705	0.0016079	-0.78895	-0.00042704	2.1816	0.0011808	541.2727339189116	16.885	0.39975	16.885	16.752	17.151	0					17	10	2	0	0	0	0.99726	1	104	104		20.947	1.587	1	62117	+		71730	19892	50266	50349	78345	78345					-0.005824013360097524
SEVSLPVGSR	10	Unmodified	_SEVSLPVGSR_					0	0	0		ENST00000469827.1_1_3:58417358-58419536:-|nuORF	ENST00000469827.1_1_3:58417358-58419536:-|nuORF	ENST00000469827.1_1_3:58417358-58419536:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.7813110351562	2	515.780013	1029.54547	0.28892	0.00014902	4.0558	0.0020919	4.3447	0.0022409	515.7819552185657	71.362	1.1071	71.362	70.909	72.017	0					76	23	4	0	0	0	0.61732	1	8669	8669		75.043	5.4157	1	4423800			71731	14918	50267	50350	78346	78346					0.03188251092274186
SEWLRGYDV	9	Unmodified	_SEWLRGYDV_					0	0	0			REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.769287109375	2	562.772188	1123.52982	-0.10087	-5.6766E-05	-4.2309	-0.002381	-4.3318	-0.0024378	562.769552585789	63.122	0.57569	62.864	62.663	63.239	-0.25824					31	13	3	0	0	0	0.4752	1	7116	7116		60.972	7.6205	1	1249600	+		71732	36345	50268	50351	78347	78347					-0.027000354247547875
SEWLRGYDV	9	Unmodified	_SEWLRGYDV_					0	0	0			REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	562.772188	1123.52982	-1.1051	-0.00062192	-2.7517	-0.0015486	-3.8569	-0.0021705	562.7707364331986	62.709	0.86871	62.709	62.222	63.09	0	-0.057877	0.0015664	NaN	60.972	37	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1453600	+		71733	36345	50268	50351							-0.027000354247547875
SEWLRGYDV	9	Unmodified	_SEWLRGYDV_					0	0	0			REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	562.772188	1123.52982	-1.0529	-0.00059255	-3.7868	-0.0021311	-4.8398	-0.0027237	562.7697859184084	62.936	0.71695	62.697	62.451	63.168	-0.23926	-0.070015	0.00040138	NaN	60.972	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1292600	+		71734	36345	50268	50351							-0.027000354247547875
SEWLRGYDV	9	Unmodified	_SEWLRGYDV_					0	0	0			REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	REV__LZTR1|p.E431V|1|0.2|ENSG00000099949|chr22:20993693-20993693|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	562.772188	1123.52982	-0.40858	-0.00022994	-4.3371	-0.0024408	-4.7456	-0.0026707	562.7695213705538	62.648	0.61984	62.71	62.442	63.062	0.062763	-0.056582	-0.00021791	NaN	60.972	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1293000	+		71735	36345	50268	50351							-0.027000354247547875
SEWVPPLLEEL	11	Unmodified	_SEWVPPLLEEL_					0	0	0			REV__nc|ENSG00000173805|P54257-3|HAP1	REV__nc|ENSG00000173805|P54257-3|HAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.5661315917969	3	437.899216	1310.67582	-0.94893	-0.00041554	1.9914	0.00087203	1.0425	0.0004565	437.9000020267275	55.829	0.75178	55.673	55.424	56.176	-0.15656					37	19	2	0	0	0	0.024751	1	6014	6014		34.087	9.8106	1	1013300	+		71736	26808	50269	50352	78348	78348					0.03290802300625728
SEYFEYFAPD	10	Unmodified	_SEYFEYFAPD_					0	0	0		ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	634.3247680664062	2	634.261319	1266.50808	0.36447	0.00023117	2.2641	0.001436	2.6286	0.0016672	634.2624367074483	58.869	0.35291	58.627	58.461	58.814	-0.24165					12	8	2	0	0	0	0.03519	1	6465	6465		19.997	3.2794	1	74232			71737	8185	50270	50353	78349	78349					-0.11450884964006036
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7664794921875	2	520.766571	1039.51859	-0.78335	-0.00040794	0.059699	3.1089E-05	-0.72365	-0.00037685	520.7665767227601	47.481	3.8194	47.481	46.659	50.479	0					218	109	5	0	0	0	0.50517	3	4796	4759;4783;4796		87.696	10.85	1	74814000	+		71738	20386	50271	50354	78350;78351;78352	78352					0.0004114248110909102
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7660522460938	2	520.766571	1039.51859	-0.22166	-0.00011544	-0.48415	-0.00025213	-0.70582	-0.00036756	520.7662782590676	47.647	4.0898	47.494	46.698	50.788	-0.153					259	116	4	0	0	0	0.52765	2	4765	4765;4816		85.161	8.3142	1	67190000	+		71739	20386	50271	50354	78353;78354	78353					0.0004114248110909102
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.766357421875	2	520.766571	1039.51859	-1.0985	-0.00057208	0.33111	0.00017243	-0.76744	-0.00039965	520.766710576239	47.412	3.6363	47.471	46.918	50.554	0.059097					219	103	5	0	0	0	0.57594	3	4702	4690;4702;4714		79.713	12.219	1	75914000	+		71740	20386	50271	50354	78355;78356;78357	78356					0.0004114248110909102
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7667236328125	2	520.766571	1039.51859	-0.46416	-0.00024172	-0.34831	-0.00018139	-0.81247	-0.00042311	520.7664167659216	47.498	3.4956	47.402	46.86	50.355	-0.096649					231	93	6	0	0	0	0.50517	5	4625	4625;4648;4660;4697;4711		87.696	21.893	1	69514000	+		71741	20386	50271	50354	78358;78359;78360;78361;78362	78358					0.0004114248110909102
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7661743164062	2	520.766571	1039.51859	-0.025376	-1.3215E-05	-0.85303	-0.00044423	-0.8784	-0.00045744	520.7661631309459	47.821	3.1046	47.545	47.194	50.299	-0.27598					242	83	6	0	0	0	0.59716	3	4725	4701;4725;4738		77.318	11.989	1	68621000	+		71742	20386	50271	50354	78363;78364;78365	78364					0.0004114248110909102
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7664184570312	2	520.766571	1039.51859	0.23425	0.00012199	-1.11	-0.00057806	-0.87576	-0.00045607	520.7660206360341	47.627	3.2351	47.44	46.93	50.165	-0.18684					241	86	6	0	0	0	0.59716	4	4695	4695;4721;4732;4747		77.318	21.813	1	70558000	+		71743	20386	50271	50354	78366;78367;78368;78369	78366					0.0004114248110909102
SEYPVILSI	9	Unmodified	_SEYPVILSI_					0	0	0		ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7865905761719	2	510.784233	1019.55391	0.051056	2.6079E-05	-4.1939	-0.0021422	-4.1428	-0.0021161	510.7832249645329	86.992	1.6165	86.992	86.386	88.003	0					78	38	5	0	0	0	0.15029	2	10949	10949;10960		99.375	17.07	1	890020			71744	4018	50272	50355	78370;78371	78370					0.04491805008922256
SEYPVILSI	9	Unmodified	_SEYPVILSI_					0	0	0		ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7856750488281	2	510.784233	1019.55391	0.14923	7.6222E-05	-1.0137	-0.00051779	-0.86448	-0.00044156	510.7832387561055	87.105	1.0762	87.069	86.692	87.769	-0.035355					44	25	3	0	0	0	0.29158	1	10921	10921		76.774	5.4784	1	1076100			71745	4018	50272	50355	78372	78372					0.04491805008922256
SEYPVILSI	9	Unmodified	_SEYPVILSI_					0	0	0		ENSG00000124181|ENST00000685551|PLCG1;nc|ENSG00000124181|P19174|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	ENSG00000124181|ENST00000685551|PLCG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7859191894531	2	510.784233	1019.55391	0.33721	0.00017224	-1.0802	-0.00055174	-0.74298	-0.0003795	510.7831976285189	87.112	1.3562	87.134	86.634	87.991	0.021263					50	32	3	0	0	0	0.20967	2	10867	10867;10879		87.754	16.459	1	1142000			71746	4018	50272	50355	78373;78374	78373					0.04491805008922256
SEYSSGTVLE	10	Unmodified	_SEYSSGTVLE_					0	0	0			REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.24755859375	2	536.245669	1070.47678	0.34311	0.00018399	1.7432	0.00093477	2.0863	0.0011188	536.2463994514429	70.461	2.043	70.168	69.714	71.757	-0.29292					98	55	3	0	0	0	0.96965	1	8485	8485		49.442	1.7842	1	4878300	+		71747	20952	50273	50356	78375	78375					-0.05563457998096055
SEYTVNLTL	9	Unmodified	_SEYTVNLTL_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2691040039062	2	520.268947	1038.52334	-0.9196	-0.00047844	0.54997	0.00028613	-0.36963	-0.00019231	520.2690974479854	75.055	0.80529	75.055	74.676	75.481	0					52	20	3	0	0	0	0.16468	1	9216	9216		96.19	8.4361	1	3019800	+		71748	25436	50274	50357	78376	78376					0.005620266238565819
SEYTVNLTL	9	Unmodified	_SEYTVNLTL_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.26904296875	2	520.268947	1038.52334	-0.37885	-0.0001971	-0.017808	-9.2647E-06	-0.39666	-0.00020637	520.2687956382292	75.337	0.79587	75.092	74.716	75.512	-0.24455					52	20	3	0	0	0	0.12602	3	9193	9193;9215;9228		104.75	7.2739	1	3137200	+		71749	25436	50274	50357	78377;78378;78379	78377					0.005620266238565819
SEYTVNLTL	9	Unmodified	_SEYTVNLTL_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.2691040039062	2	520.268947	1038.52334	-0.038208	-1.9878E-05	0.12442	6.4729E-05	0.086207	4.4851E-05	520.2688033385149	75.355	0.90073	75.096	74.695	75.596	-0.25866					58	21	4	0	0	0	0.12602	3	8916	8907;8916;8928		104.75	13.27	1	2954500	+		71750	25436	50274	50357	78380;78381;78382	78381					0.005620266238565819
SEYTVNLTL	9	Unmodified	_SEYTVNLTL_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.2691650390625	2	520.268947	1038.52334	0.37022	0.00019261	-0.41411	-0.00021545	-0.043897	-2.2838E-05	520.2685111733722	75.214	0.70029	75.038	74.689	75.389	-0.17548					52	16	4	0	0	0	0.067814	3	8883	8871;8883;8895		122.18	15.761	1	3275900	+		71751	25436	50274	50357	78383;78384;78385	78384					0.005620266238565819
SEYVEKFYR	9	Unmodified	_SEYVEKFYR_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.535400390625	3	407.536389	1219.58734	0.44154	0.00017995	-2.6177	-0.0010668	-2.1761	-0.00088684	407.53513547327213	21.684	1.1974	21.494	21.078	22.276	-0.19072					55	24	4	0	0	0	0.86013	1	696	696		35.152	3.5178	1	465260			71752	3299	50275	50358	78386	78386					-0.013671932191982705
SEYYNSLKWIL	11	Unmodified	_SEYYNSLKWIL_					0	0	0		nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.7746887207031	3	472.578365	1414.71327	0.42651	0.00020156	-2.1202	-0.001002	-1.6937	-0.00080042	472.57741427648324	37.268	0.46078	37.075	36.889	37.35	-0.193					17	11	2	0	0	0	0.024809	1	2953	2953		12.433	0	1	95135			71753	1132	50276	50359	78387	78387					0.022498935662270014
SFAEIKFH	8	Unmodified	_SFAEIKFH_					0	0	0		nc|ENSG00000183621|Q7Z4V0-3|ZNF438;nc|ENSG00000183621|Q7Z4V0-2|ZNF438;ENSG00000183621|ENST00000436087|ZNF438	nc|ENSG00000183621|Q7Z4V0-3|ZNF438	nc|ENSG00000183621|Q7Z4V0-3|ZNF438	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.7563781738281	2	489.75581	977.497067	1.6722	0.00081899	-0.6965	-0.00034112	0.97574	0.00047788	489.7553395939245	19.741	1.5136	19.807	19.587	21.101	0.066195					71	30	4	0	0	0	0.95679	1	432	432		44.117	1.7207	1	617300			71754	9250	50277	50360	78388	78388					0.007418022430556448
SFAFSPVPGR	10	Unmodified	_SFAFSPVPGR_					0	0	0			REV__nc|ENSG00000187642|Q5SV97-3|PERM1	REV__nc|ENSG00000187642|Q5SV97-3|PERM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.7811889648438	2	532.779816	1063.54508	-0.21875	-0.00011655	3.3017	0.0017591	3.0829	0.0016425	532.781508051497	57.182	1.2183	56.98	56.52	57.738	-0.20209					84	32	3	0	0	0	1.0508	1	6271	6271		39.253	2.0937	1	7281400	+		71755	27954	50278	50361	78389	78389					0.01584876163087756
SFALELVE	8	Unmodified	_SFALELVE_					0	0	0			REV__ENSG00000155849|ENST00000310758|ELMO1	REV__ENSG00000155849|ENST00000310758|ELMO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.7146301269531	2	454.242201	906.469849	-0.17599	-7.994E-05	-2.096	-0.00095209	-2.272	-0.001032	454.24116550822737	23.014	0.3602	22.953	22.709	23.069	-0.060862					10	7	2	0	0	0	0.027866	1	833	833		18.324	0	1	23191	+		71756	25032	50279	50362	78390	78390					0.012872739120098231
SFAQRDRR	8	Unmodified	_SFAQRDRR_					0	0	0			REV__ENST00000473217.5_1_17:27902646-27905994:-|nuORF	REV__ENST00000473217.5_1_17:27902646-27905994:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2557983398438	2	518.275764	1034.53697	-0.0052574	-2.7248E-06	-0.3249	-0.00016839	-0.33016	-0.00017111	518.7769179991986	49.966	0.8983	49.86	49.486	50.385	-0.10558					79	23	5	0	0	0	0.027866	1	5105	5105		44.117	16.035	1	1358400	+		71757	21720	50280	50363	78391	78391					0.021087419663217588
SFASLQET	8	Unmodified	_SFASLQET_					0	0	0		nc|ENSG00000186409|Q5VVM6-2|CCDC30;nc|ENSG00000186409|Q5VVM6|CCDC30;ENSG00000186409|ENST00000657597|CCDC30	nc|ENSG00000186409|Q5VVM6-2|CCDC30	nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7147216796875	2	441.713808	881.413062	-0.143	-6.3167E-05	2.3066	0.0010189	2.1636	0.00095568	441.7145119181069	31.128	2.6513	31.197	29.518	32.169	0.06896					212	64	6	0	0	0	0.99042	1	1998	1998		38.806	5.2906	1	2819600			71758	9546	50281	50364	78392	78392					-0.03238773644511639
SFCCCGDD	8	Unmodified	_SFCCCGDD_					0	0	0			REV__ENST00000174618.4_1_17:2288065-2288200:-|nuORF	REV__ENST00000174618.4_1_17:2288065-2288200:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.1820983886719	2	425.114232	848.21391	0.20407	8.6755E-05	-1.8531	-0.00078776	-1.649	-0.00070101	425.11239356759194	34.789	0.24239	34.573	34.429	34.671	-0.21556					6	5	2	0	0	0	0.027866	1	2596	2596		0	0	1	34974	+		71759	29283	50282	50365	78393	78393					-0.21626816530738324
SFCLIINTL	9	Unmodified	_SFCLIINTL_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.76953125	2	512.280803	1022.54705	-1.0989	-0.00056292	2.6136	0.0013389	1.5148	0.00077599	512.2821213969062	85.905	1.0632	85.928	85.616	86.68	0.023666					41	24	2	0	0	0	0.024263	1	10744	10744		60.972	2.19	1	132680	+		71760	25486	50283	50366	78394	78394					0.03668168856700049
SFCSFRKF	8	Unmodified	_SFCSFRKF_					0	0	0			REV__ENST00000489744.1_1_3:196626921-196632085:+|nuORF	REV__ENST00000489744.1_1_3:196626921-196632085:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.25140380859375	2	511.249837	1020.48512	-0.054484	-2.7855E-05	2.1079	0.0010777	2.0534	0.0010498	511.25084577755933	46.972	0.6671	46.876	46.572	47.239	-0.096653					44	17	4	0	0	0	0.93274	1	4578	4578		47.916	0	1	3633100	+		71761	33683	50284	50367	78395	78395					-0.024301377717847572
SFDFFVLQK	9	Unmodified	_SFDFFVLQK_					0	0	0			REV__nc|ENSG00000091106|Q9NPP4-2|NLRC4	REV__nc|ENSG00000091106|Q9NPP4-2|NLRC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.266357421875	2	565.797675	1129.5808	-0.69346	-0.00039236	-2.8677	-0.0016225	-3.5611	-0.0020149	565.7960300858011	69.394	0.75238	69.127	68.741	69.493	-0.26725					39	17	3	0	0	0	0.024506	1	8097	8097		38.806	0	1	523090	+		71762	20897	50285	50368	78396	78396					0.02118913620074636
SFDILKPLL	9	Unmodified	_SFDILKPLL_					0	0	0			REV__nc|ENSG00000254087|P07948-2|LYN	REV__nc|ENSG00000254087|P07948-2|LYN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3028564453125	2	523.318243	1044.62193	0.28916	0.00015132	-1.4332	-0.00075	-1.144	-0.00059867	523.3173942071103	87.991	0.51661	87.964	87.7	88.217	-0.027664					14	12	2	0	0	0	0.024263	1	11039	11039		34.173	0	1	50494	+		71763	29050	50286	50369	78397	78397					0.10140674659578508
SFDLFSVLA	9	Unmodified	_SFDLFSVLA_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.75079345703125	2	499.7633	997.512048	-0.42919	-0.00021449	-3.321	-0.0016597	-3.7502	-0.0018742	499.76149681038237	35.657	0.88769	35.471	35.14	36.028	-0.18675					38	24	2	0	0	0	0.024412	1	2745	2745		40.573	16.37	1	791430	+		71764	24668	50287	50370	78398	78398					0.01319249320374638
SFDLFSVLA	9	Unmodified	_SFDLFSVLA_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.7633	997.512048	-1.1245	-0.000562	-3.368	-0.0016832	-4.4925	-0.0022452	499.7615118873188	35.633	0.43631	35.61	35.346	35.782	-0.022858	0.035888	0.00011945	NaN	40.573	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	714440	+		71765	24668	50287	50370							0.01319249320374638
SFDLFSVLA	9	Unmodified	_SFDLFSVLA_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.7633	997.512048	-0.36269	-0.00018126	-4.293	-0.0021455	-4.6556	-0.0023267	499.76103250754545	35.635	0.44115	35.679	35.42	35.861	0.04406	0.10474	-0.0008051	NaN	40.573	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	703280	+		71766	24668	50287	50370							0.01319249320374638
SFDPIIQLN	9	Unmodified	_SFDPIIQLN_					0	0	0			REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	REV__nc|ENSG00000185722|Q9P2R3-4|ANKFY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7897338867188	2	523.779482	1045.54441	-0.62219	-0.00032589	-3.9482	-0.002068	-4.5704	-0.0023939	523.7797914119551	84.029	0.64977	84.055	83.684	84.334	0.026558					22	14	2	0	0	0	0.024457	1	10451	10451		37.159	16.677	1	95684	+		71767	37018	50288	50371	78399	78399					0.023460367234065416
SFDRFIDLY	9	Unmodified	_SFDRFIDLY_					0	0	0			REV__ENSG00000072818|ENST00000158762|ACAP1	REV__ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.289794921875	2	588.290214	1174.56587	-0.048063	-2.8275E-05	0.081395	4.7884E-05	0.033332	1.9609E-05	588.2902216385961	85.339	1.3508	85.144	84.808	86.159	-0.19507					83	31	4	0	0	0	0.37611	1	10355	10355		67.494	4.1874	1	1864400	+		71768	20483	50289	50372	78400	78400					-0.0144257824788383
SFDRFIDLY	9	Unmodified	_SFDRFIDLY_					0	0	0			REV__ENSG00000072818|ENST00000158762|ACAP1	REV__ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.2899780273438	2	588.290214	1174.56587	-0.0081875	-4.8166E-06	-0.18541	-0.00010908	-0.1936	-0.00011389	588.2900582231244	85.201	1.6526	85.051	84.747	86.4	-0.14967					92	38	5	0	0	0	0.56934	1	10350	10350		54.776	0	1	1808700	+		71769	20483	50289	50372	78401	78401					-0.0144257824788383
SFDRSIPE	8	Unmodified	_SFDRSIPE_					0	0	0		ENSG00000069482|ENST00000265643|GAL	ENSG00000069482|ENST00000265643|GAL	ENSG00000069482|ENST00000265643|GAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.25433349609375	2	475.732532	949.45051	-0.20701	-9.8483E-05	0.69467	0.00033048	0.48766	0.00023199	475.73277966435296	27.484	0.67732	27.328	26.887	27.564	-0.15664					25	15	2	0	0	0	0.027866	1	1444	1444		20.947	4.242	1	175010			71770	1403	50290	50373	78402	78402					-0.02623682378907688
SFEEAQDVL	9	Unmodified	_SFEEAQDVL_					0	0	0			REV__ENSG00000197838|ENST00000330436|CYP2A13;REV__ENSG00000255974|ENST00000301141|CYP2A6	REV__ENSG00000197838|ENST00000330436|CYP2A13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.2406616210938	2	519.242929	1036.47131	-0.23287	-0.00012091	-3.5449	-0.0018406	-3.7777	-0.0019616	519.2409420634314	25.953	1.1755	26.033	25.706	26.881	0.080088					71	27	4	0	0	0	0.4752	1	1238	1238		60.972	3.1607	1	1497800	+		71771	28351;29074	50291	50374	78403	78403					-0.045471367898926474
SFEETVDVL	9	Unmodified	_SFEETVDVL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.2406616210938	2	519.75313	1037.49171	-0.428	-0.00022245	3.9854	0.0020714	3.5574	0.001849	519.7551199763475	26.283	0.70513	26.364	25.924	26.629	0.081293					20	16	2	0	0	0	0.024205	1	1238	1238		44.117	0	1	64945			71772	9030	50292	50375	78404	78404					-0.025539661300854277
SFEIAVDSF	9	Unmodified	_SFEIAVDSF_					0	0	0			REV__ENSG00000198633|ENST00000433050|ZNF534	REV__ENSG00000198633|ENST00000433050|ZNF534	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2877502441406	2	507.742565	1013.47058	0.56828	0.00028854	-3.7667	-0.0019125	-3.1984	-0.001624	507.7406814528046	51.309	2.7203	51.197	49.927	52.647	-0.11163					165	71	4	0	0	0	0.024292	1	5486	5486		68.787	5.8084	1	1593000	+		71773	28442	50293	50376	78405	78405					-0.03561931438935062
SFELKKLAT	9	Unmodified	_SFELKKLAT_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2537231445312	2	518.8055	1035.59645	0.5067	0.00026288	-1.1353	-0.00058898	-0.62857	-0.0003261	518.804684955265	68.794	0.56583	68.551	68.266	68.832	-0.24277					33	13	3	0	0	0	0.024541	1	7930	7930		29.17	9.8101	1	1046500	+		71774	28288	50294	50377	78406	78406					0.08007200137149084
SFEMVQPDF	9	Unmodified	_SFEMVQPDF_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.R1136S|1|0.18|ENSG00000196159|chr4:125319819-125319819|G/C|missense_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3030395507812	2	550.241875	1098.4692	-0.44363	-0.0002441	3.3105	0.0018216	2.8669	0.0015775	550.2434989821962	78.173	1.2404	78.173	77.752	78.993	0					78	29	3	0	0	0	0.024323	1	9740	9740		27.882	0	1	1392800			71775	9828	50295	50378	78407	78407					-0.07609888799356668
SFESHIQKN	9	Unmodified	_SFESHIQKN_					0	0	0			REV__ENSG00000177483|ENST00000316997|RBM44	REV__ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.3246459960938	2	545.269813	1088.52507	-0.40774	-0.00022233	1.3663	0.000745	0.95855	0.00052267	545.2725464564702	68.194	0.19617	68.213	68.08	68.276	0.018913					6	4	2	0	0	0	0.024427	1	8069	8069		26.693	0	1	96348	+		71776	27118	50296	50379	78408	78408					-0.015649195675223382
SFEVSGRSW	9	Unmodified	_SFEVSGRSW_					0	0	0		ENST00000566161.5_1_16:71841998-71842820:-|nuORF	ENST00000566161.5_1_16:71841998-71842820:-|nuORF	ENST00000566161.5_1_16:71841998-71842820:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.75146484375	2	527.751256	1053.48796	-0.78686	-0.00041526	-0.90105	-0.00047553	-1.6879	-0.00089079	527.7508774325148	43.847	1.013	43.743	43.19	44.203	-0.10468					88	27	6	0	0	0	0.39228	1	4082	4082		66.429	0.96389	1	10379000			71777	16937	50297	50380	78409	78409					-0.0366459111326094
SFEYWELD	8	Unmodified	_SFEYWELD_					0	0	0			REV__ENST00000405340.6_1_22:24200109-24200271:+|nuORF	REV__ENST00000405340.6_1_22:24200109-24200271:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2473754882812	2	544.732197	1087.44984	-0.6273	-0.00034171	-2.2759	-0.0012398	-2.9032	-0.0015815	544.730771083286	52.23	0.57553	52.046	51.778	52.354	-0.18404					30	14	3	0	0	0	0.027866	1	5441	5441		7.1934	0	1	725400	+		71778	31908	50298	50381	78410	78410					-0.09038521818615664
SFFCCFRD	8	Unmodified	_SFFCCFRD_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7874145507812	2	512.704405	1023.39426	-0.40502	-0.00020766	2.5974	0.0013317	2.1924	0.0011241	512.7055266266357	45.221	0.38569	45.01	44.831	45.217	-0.21109					15	10	2	0	0	0	0.027866	1	4261	4261		26.693	1.1189	1	142960			71779	5760	50299	50382	78411	78411					-0.11650349811577598
SFFFCFVW	8	Unmodified	_SFFFCFVW_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2567138671875	2	541.743857	1081.47316	-0.94672	-0.00051288	-3.488	-0.0018896	-4.4347	-0.0024025	541.7412613794602	48.561	0.14312	48.379	48.303	48.446	-0.18206					5	3	2	0	0	0	0.027866	1	4823	4823		37.028	0	1	61065			71780	3406	50300	50383	78412	78412					-0.06431754514983368
SFFHFCLV	8	Unmodified	_SFFHFCLV_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.6046447753906	2	500.241481	998.468409	0.1492	7.4636E-05	2.6753	0.0013383	2.8245	0.0014129	500.24253082387736	56.435	0.58641	56.219	55.881	56.468	-0.21607					32	14	3	0	0	0	0.027866	1	6078	6078		20.482	0	1	335120			71781	7834	50301	50384	78413	78413					-0.030886386577435587
SFFLRMKCV	9	Unmodified	_SFFLRMKCV_					0	0	0		ENSG00000112246|ENST00000369208|SIM1;nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2	ENSG00000112246|ENST00000369208|SIM1;nc|ENSG00000159263|Q14190-2|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.26708984375	2	565.796097	1129.57764	-0.28694	-0.00016235	-0.73243	-0.0004144	-1.0194	-0.00057675	565.7952312619132	69.346	0.90857	69.123	68.606	69.514	-0.22245					38	21	3	0	0	0	0.024511	1	8074	8074		32.812	9.2897	1	540130			71782	3188;6735	50302	50385	78414	78414					0.01803623970067747
SFFPGHLTI	9	Unmodified	_SFFPGHLTI_					0	0	0			REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.76470947265625	2	509.77146	1017.52837	-0.73132	-0.0003728	0.84325	0.00042986	0.11193	5.7058E-05	509.77165611725997	25.96	0.34688	25.96	25.737	26.083	0					12	7	2	0	0	0	0.024294	1	1271	1271		45.952	11.779	1	156330	+		71783	21976	50303	50386	78415	78415					0.0203037527712695
SFFPLHWRPRQ	11	Unmodified	_SFFPLHWRPRQ_					0	0	0			REV__ENSG00000135637|ENST00000393965|CCDC142	REV__ENSG00000135637|ENST00000393965|CCDC142	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.579345703125	3	490.929955	1469.76804	-0.12119	-5.9493E-05	2.2118	0.0010859	2.0906	0.0010264	491.26588689887	19.321	0.24792	19.16	19.034	19.282	-0.16079					6	4	2	0	0	0	0.024801	1	407	407		29.551	7.7703	1	8117.4	+		71784	23565	50304	50387	78416	78416					0.05194369948139865
SFFQPGMVVS	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))SFFQPGM(Oxidation (M))VVS_		SFFQPGM(1)VVS		SFFQPGM(72)VVS	1	0	1			REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.2725830078125	2	578.7708	1155.52705	-0.63515	-0.0003676	1.6062	0.00092963	0.97107	0.00056202	579.2726087768527	69.63	1.0037	69.363	68.995	69.999	-0.26725					73	23	5	0	0	0	0.64538	1	8076	8076		71.877	17.101	1	1111100	+		71785	34846	50305	50388	78417	78417		946			-0.044496268739294464
SFFQPGMVVS	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))SFFQPGM(Oxidation (M))VVS_					1	0	1			REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	578.7708	1155.52705	-0.63515	-0.0003676	1.6062	0.00092963	0.97107	0.00056202	579.2726087768527	69.63	1.0037	69.363	68.995	69.999	-0.26725	0.034196	5.0717E-05	NaN	71.877	73	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1111100	+		71786	34846	50305	50388				946			-0.044496268739294464
SFFQPGMVVS	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))SFFQPGM(Oxidation (M))VVS_					1	0	1			REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.7708	1155.52705	-0.44594	-0.0002581	1.5043	0.00087066	1.0584	0.00061256	579.2725504524863	69.538	0.867	69.288	68.991	69.858	-0.25063	-0.040931	-6.723E-05	NaN	71.877	66	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1379100	+		71787	34846	50305	50388				946			-0.044496268739294464
SFFQPGMVVS	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))SFFQPGM(Oxidation (M))VVS_					1	0	1			REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	578.7708	1155.52705	-0.5503	-0.0003185	1.5858	0.00091784	1.0355	0.00059934	579.2726750911951	69.558	0.86804	69.335	69.02	69.888	-0.22245	0.0067345	2.7135E-05	NaN	71.877	68	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1545200	+		71788	34846	50305	50388				946			-0.044496268739294464
SFFSKEEENL	10	Unmodified	_SFFSKEEENL_					0	0	0			REV__ENST00000506360.5_1_4:8220037-8234255:+|nuORF;REV__ENSG00000125089|ENST00000245105|SH3TC1	REV__ENSG00000125089|ENST00000245105|SH3TC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.8864440917969	3	410.527671	1228.56118	0.31323	0.00012859	-2.2427	-0.00092067	-1.9294	-0.00079208	410.52660964248054	33.96	0.71362	34.013	33.767	34.481	0.052677					40	17	3	0	0	0	0.03519	1	2503	2503		27.047	9.2142	1	432590	+		71789	22798;34025	50306	50389	78418	78418					-0.043955071813115865
SFFTFILIL	9	Unmodified	_SFFTFILIL_					0	0	0		ENST00000338222.6_1_X:56592195-56592459:+|nuORF	ENST00000338222.6_1_X:56592195-56592459:+|nuORF	ENST00000338222.6_1_X:56592195-56592459:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2999267578125	2	550.823161	1099.63177	-0.54291	-0.00029905	3.1538	0.0017372	2.6109	0.0014381	551.3269158751847	66.776	0.16882	66.776	66.672	66.841	0					5	3	2	0	0	0	0.024535	1	7946	7946		18.324	0	1	91370			71790	12436	50307	50390	78419	78419					0.0859386266497495
SFFYKRLNQRE	11	Unmodified	_SFFYKRLNQRE_					0	0	0		nc|ENSG00000112701|Q9GZR1-2|SENP6;SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant;ENSG00000112701|ENST00000447266|SENP6;ENST00000474906.2_1_6:76388527-76407234:+|nuORF	nc|ENSG00000112701|Q9GZR1-2|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.779296875	3	496.596642	1486.7681	-0.8448	-0.00041953	2.2135	0.0010992	1.3687	0.00067969	496.59766780109106	51.33	0.50512	51.417	51.039	51.544	0.087009					20	13	2	0	0	0	0.024846	1	5335	5335		16.53	10.209	1	160270			71791	18180	50308	50391	78420	78420					0.04418325157507752
SFGFFIILI	9	Unmodified	_SFGFFIILI_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7791137695312	2	528.810054	1055.60555	-0.3238	-0.00017123	-3.7018	-0.0019575	-4.0256	-0.0021288	528.8077931300193	63.947	0.54825	63.72	63.44	63.988	-0.22773					20	13	2	0	0	0	0.024436	1	7220	7220		23.042	0	1	1078300			71792	6396	50309	50392	78421	78421					0.07997593493496424
SFGISVLRAL	10	Unmodified	_SFGISVLRAL_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;CACNA1E|p.F1413Lfs*20|1|0.31|ENSG00000198216|chr1:181757034-181757037|TTCT/-|frameshift_variant;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8182373046875	2	531.818941	1061.62333	0.061557	3.2737E-05	-3.5146	-0.0018691	-3.453	-0.0018364	531.8169861653995	99.962	0.63961	99.956	99.608	100.25	-0.0050888					34	17	3	0	0	0	1.0508	1	12714	12714		39.253	5.0803	1	1034500			71793	202;6028	50310	50393	78422	78422					0.09498308748334239
SFGKVMLARV	10	Unmodified	_SFGKVMLARV_					0	0	0		nc|ENSG00000027075|P24723-2|PRKCH;ENSG00000027075|ENST00000332981|PRKCH	nc|ENSG00000027075|P24723-2|PRKCH	nc|ENSG00000027075|P24723-2|PRKCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.78759765625	2	554.320794	1106.62703	0.18835	0.00010441	2.2843	0.0012663	2.4727	0.0013707	554.3220050571865	81.286	1.9115	81.057	80.296	82.208	-0.2289					94	45	3	0	0	0	0.03519	1	9907	9907		29.17	16.963	1	250240			71794	997	50311	50394	78423	78423					0.07798655250508091
SFGMEVAANI	10	Unmodified	_SFGMEVAANI_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7578735351562	2	519.749867	1037.48518	0.67783	0.0003523	-0.60235	-0.00031307	0.075473	3.9227E-05	519.749239596007	59.21	0.76044	59.029	58.75	59.511	-0.18134					25	18	2	0	0	0	0.03519	1	6611	6611		19.997	5.8596	1	88443	+		71795	20011	50312	50395	78424	78424					-0.03206182562462345
SFGMEVAANI	10	Unmodified	_SFGMEVAANI_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.749867	1037.48518	0.38093	0.00019799	-0.83799	-0.00043554	-0.45706	-0.00023756	519.7493644630737	58.872	1.2476	58.872	58.531	59.779	0	-0.10534	-5.5021E-07	NaN	14.137	57	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349370	+		71796	20011	50312	50395							-0.03206182562462345
SFGMEVAANI	10	Unmodified	_SFGMEVAANI_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.749867	1037.48518	1.3005	0.00067593	-1.2819	-0.00066629	0.018549	9.6408E-06	519.7490766496193	59.202	1.4261	59.015	58.348	59.774	-0.18705	0.037904	-0.00046205	NaN	14.137	73	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363770	+		71797	20011	50312	50395							-0.03206182562462345
SFGMEVAANI	10	Unmodified	_SFGMEVAANI_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.749867	1037.48518	0.049035	2.5486E-05	-0.31667	-0.00016459	-0.26763	-0.0001391	519.7495763084863	58.801	1.1746	58.889	58.483	59.658	0.088146	-0.088334	0.00054136	NaN	14.137	54	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336600	+		71798	20011	50312	50395							-0.03206182562462345
SFGMEVAANI	10	Unmodified	_SFGMEVAANI_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.749867	1037.48518	0.50158	0.00026069	-0.71329	-0.00037073	-0.21172	-0.00011004	519.7494866151171	59.33	0.72393	59.081	58.847	59.571	-0.24841	0.10416	0.00012907	NaN	14.137	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85017	+		71799	20011	50312	50395							-0.03206182562462345
SFGPGVTR	8	Unmodified	_SFGPGVTR_					0	0	0		ENST00000562464.1_1_16:88876554-88878111:-|nuORF	ENST00000562464.1_1_16:88876554-88878111:-|nuORF	ENST00000562464.1_1_16:88876554-88878111:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	410.7188415527344	2	410.719227	819.423902	0.77647	0.00031891	-1.8726	-0.00076913	-1.0962	-0.00045022	410.7183890976786	95.452	1.8753	95.455	94.826	96.701	0.0033798					108	43	4	0	0	0	1.0574	1	12155	12155		23.042	2.5607	1	3611200			71800	16841	50313	50396	78425	78425					0.006966735204287033
SFGRTLDSD	9	Unmodified	_SFGRTLDSD_					0	0	0		ENSG00000204130|ENST00000602465|RUFY2;nc|ENSG00000204130|Q8WXA3-3|RUFY2;nc|ENSG00000204130|Q8WXA3-1|RUFY2;ENST00000472394.2_1_10:70143908-70166946:-|nuORF;nc|ENSG00000204130|Q8WXA3-4|RUFY2	ENSG00000204130|ENST00000602465|RUFY2	ENSG00000204130|ENST00000602465|RUFY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.24981689453125	2	499.232896	996.451239	-0.035727	-1.7836E-05	-0.44488	-0.0002221	-0.48061	-0.00023994	499.2326890844079	28.423	0.57844	28.504	28.248	28.826	0.080811					19	13	2	0	0	0	0.024288	1	1643	1643		71.877	8.5712	1	99218			71801	10302	50314	50397	78426	78426					-0.047128877298519
SFGTLPEKT	9	Unmodified	_SFGTLPEKT_					0	0	0		MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant;MDGA2|p.G845Dfs*4|1|0.65|ENSG00000139915|chr14:46873444-46873444|C/-|frameshift_variant;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2;nc|ENSG00000139915|Q7Z553-2|MDGA2	MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.7455139160156	2	490.258382	978.502212	-0.49919	-0.00024473	0.39565	0.00019397	-0.10354	-5.0763E-05	490.25865334365426	42.759	0.53793	42.647	42.353	42.891	-0.11253					19	13	2	0	0	0	0.024438	1	3858	3858		36.447	14.487	1	302000			71802	5376	50315	50398	78427	78427					0.012100613149868877
SFGTLPEKT	9	Unmodified	_SFGTLPEKT_					0	0	0		MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant;MDGA2|p.G845Dfs*4|1|0.65|ENSG00000139915|chr14:46873444-46873444|C/-|frameshift_variant;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2;nc|ENSG00000139915|Q7Z553-2|MDGA2	MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7452697753906	2	490.258382	978.502212	-0.19182	-9.4041E-05	0.88824	0.00043547	0.69642	0.00034143	490.25865855747594	42.923	0.53713	42.685	42.452	42.989	-0.23736					23	13	2	0	0	0	0.024344	1	3868	3868		45.972	10.354	1	224600			71803	5376	50315	50398	78428	78428					0.012100613149868877
SFGWTVTHF	9	Unmodified	_SFGWTVTHF_					0	0	0		ENST00000317257.12_1_13:50025792-50025831:+|nuORF	ENST00000317257.12_1_13:50025792-50025831:+|nuORF	ENST00000317257.12_1_13:50025792-50025831:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.2874145507812	2	541.258717	1080.50288	-0.80202	-0.0004341	1.0573	0.00057229	0.25531	0.00013819	541.2594033350136	68.842	0.10921	68.842	68.789	68.898	0					4	2	2	0	0	0	0.024466	1	8280	8280		25.45	0	1	85962			71804	12160	50316	50399	78429	78429					-0.03415099245307829
SFHDGDESTL	10	Unmodified	_SFHDGDESTL_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.2335815429688	2	554.233093	1106.45163	-0.61697	-0.00034194	1.4779	0.00081908	0.8609	0.00047714	554.2337362243477	85.424	0.91447	85.367	85.063	85.977	-0.05761					52	21	4	0	0	0	0.88896	1	10698	10698		54.776	5.3348	1	1142900	+		71805	25914	50317	50400	78430	78430					-0.09733512800653443
SFHITSKV	8	Unmodified	_SFHITSKV_					0	0	0		nc|ENSG00000196208|Q4ZG55-4|GREB1;ENSG00000196208|ENST00000381486|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	nc|ENSG00000196208|Q4ZG55-4|GREB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2249450683594	2	459.75581	917.497067	-0.30357	-0.00013957	-3.7087	-0.0017051	-4.0123	-0.0018447	459.75413946548406	27.017	0.64106	27.004	26.786	27.427	-0.012983					25	16	2	0	0	0	0.027866	1	1481	1481		37.159	20.686	1	248600			71806	9835	50318	50401	78431	78431					0.03501802243044949
SFHLRPSPYSN	11	Unmodified	_SFHLRPSPYSN_					0	0	0		nc|ENSG00000140577|Q6UUV7-3|CRTC3;ENSG00000140577|ENST00000268184|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7798767089844	3	435.550921	1303.63093	-0.33991	-0.00014805	-0.10708	-4.6637E-05	-0.44699	-0.00019469	435.5513342454499	39.959	0.48683	39.81	39.591	40.078	-0.1497					19	12	3	0	0	0	0.024746	1	3466	3466		21.032	8.5994	1	88029			71807	5430	50319	50402	78432	78432					-0.00873583722022886
SFHNFQWEGR	10	Unmodified	_SFHNFQWEGR_					0	0	0			REV__nc|ENSG00000205946|Q6QN14|USP17L6P	REV__nc|ENSG00000205946|Q6QN14|USP17L6P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2796936035156	3	436.535383	1306.58432	-0.56268	-0.00024563	1.8288	0.00079834	1.2661	0.00055271	436.53657713798185	21.732	0.38679	21.52	21.266	21.652	-0.2128					11	7	2	0	0	0	0.03519	1	658	658		30.569	0	1	13191	+		71808	28882	50320	50403	78433	78433					-0.05671023553350096
SFIEKRHAD	9	Unmodified	_SFIEKRHAD_					0	0	0			REV__ARHGEF10L|p.C1236F|1|0.27|ENSG00000074964|chr1:17697247-17697247|G/T|missense_variant	REV__ARHGEF10L|p.C1236F|1|0.27|ENSG00000074964|chr1:17697247-17697247|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3154296875	2	551.78563	1101.55671	-0.53683	-0.00029621	-2.8198	-0.0015559	-3.3567	-0.0018522	551.784020276833	72.788	0.75391	72.59	72.206	72.96	-0.19811					32	17	2	0	0	0	0.024495	1	8503	8503		26.693	0	1	368720	+		71809	19167	50321	50404	78434	78434					0.00999073186426358
SFIFLAHPL	9	Unmodified	_SFIFLAHPL_					0	0	0		ENST00000472765.6_1_1:156307533-156307990:-|nuORF	ENST00000472765.6_1_1:156307533-156307990:-|nuORF	ENST00000472765.6_1_1:156307533-156307990:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.764892578125	2	522.797478	1043.5804	-1.3179	-0.00068897	1.4465	0.00075622	0.12863	6.7248E-05	522.7976988002524	35.989	0.41301	35.947	35.688	36.101	-0.042458					18	11	3	0	0	0	0.024262	1	2769	2769		47.916	0	1	327470			71810	14993	50322	50405	78435	78435					0.060355386908895525
SFIGVMLSFMR	11	Unmodified	_SFIGVMLSFMR_					0	0	0			REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	REV__nc|ENSG00000286105|A0A494BZU4|TMEM217B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.18646240234375	3	429.891122	1286.65154	0.056167	2.4146E-05	-3.1851	-0.0013693	-3.129	-0.0013451	430.22397290401386	24.876	0.74095	24.649	24.407	25.148	-0.22683					31	16	3	0	0	0	0.024759	1	1147	1147		23.378	2.5408	1	146790	+		71811	30801	50323	50406	78436	78436					0.0196754734172373
SFIHICSLGY	10	Unmodified	_SFIHICSLGY_					0	0	0		ENST00000561563.6_1_15:32825504-32825639:-|nuORF	ENST00000561563.6_1_15:32825504-32825639:-|nuORF	ENST00000561563.6_1_15:32825504-32825639:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	570.3004760742188	2	570.281334	1138.54812	-0.65981	-0.00037628	-1.1992	-0.00068389	-1.859	-0.0010602	570.2806747018813	44.634	0.49189	44.39	44.186	44.678	-0.2444					28	12	3	0	0	0	0.03519	1	4199	4199		27.882	4.8398	1	488070			71812	16828	50324	50407	78437	78437					-0.015616167744155973
SFIKFFLY	8	Unmodified	_SFIKFFLY_					0	0	0			REV__nc|ENSG00000101294|Q8TCT9-5|HM13	REV__nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2977905273438	2	532.794404	1063.57425	-0.22218	-0.00011837	-3.5086	-0.0018694	-3.7308	-0.0019878	532.7924966721708	34.75	0.201	34.535	34.429	34.63	-0.21555					7	4	2	0	0	0	0.027866	1	2570	2570		24.203	2.2429	1	50416	+		71813	21213	50325	50408	78438	78438					0.045010204593836534
SFIKFFLY	8	Unmodified	_SFIKFFLY_					0	0	0			REV__nc|ENSG00000101294|Q8TCT9-5|HM13	REV__nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.794404	1063.57425	-0.93254	-0.00049685	-6.5136	-0.0034704	-7.4461	-0.0039672	532.7907000011563	34.497	0.41478	34.497	34.292	34.706	0	0.081862	-0.0001975	NaN	17.365	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249590	+		71814	21213	50325	50408							0.045010204593836534
SFIKFFLY	8	Unmodified	_SFIKFFLY_					0	0	0			REV__nc|ENSG00000101294|Q8TCT9-5|HM13	REV__nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	532.794404	1063.57425	-0.40589	-0.00021626	-6.8186	-0.0036329	-7.2245	-0.0038492	532.7905803836943	34.272	0.50095	34.267	34.029	34.53	-0.0045624	-0.14729	-0.00052254	NaN	17.365	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197990	+		71815	21213	50325	50408							0.045010204593836534
SFIKFFLY	8	Unmodified	_SFIKFFLY_					0	0	0			REV__nc|ENSG00000101294|Q8TCT9-5|HM13	REV__nc|ENSG00000101294|Q8TCT9-5|HM13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.794404	1063.57425	-1.1807	-0.00062906	-5.9375	-0.0031635	-7.1182	-0.0037925	532.7908300182711	34.31	0.5508	34.36	34.089	34.64	0.050255	-0.054679	0.00041634	NaN	17.365	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147990	+		71816	21213	50325	50408							0.045010204593836534
SFILFHKHL	9	Unmodified	_SFILFHKHL_					0	0	0		ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.3322143554688	2	571.329476	1140.6444	0.49958	0.00028542	2.4918	0.0014236	2.9914	0.0017091	571.3308378391717	101.22	0.64999	101.1	100.81	101.46	-0.12576					34	14	4	0	0	0	0.77768	2	12578	12567;12578		40.778	10.46	1	283790			71817	15394	50326	50409	78439;78440	78440					0.07970318847833369
SFINPYKH	8	Unmodified	_SFINPYKH_					0	0	0			REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7869567871094	2	503.261259	1004.50797	-1.0168	-0.0005117	-2.9729	-0.0014961	-3.9897	-0.0020079	503.25965145681374	37.272	0.80894	37.052	36.807	37.615	-0.2195					37	20	3	0	0	0	0.027866	1	3039	3039		35.201	6.0512	1	1277600	+		71818	27900	50327	50410	78441	78441					0.005892046173244125
SFIQIIGHVC	10	Unmodified	_SFIQIIGHVC_					0	0	0			REV__ENST00000297156.3_1_5:134077164-134086450:+|nuORF	REV__ENST00000297156.3_1_5:134077164-134086450:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.7827758789062	2	558.797152	1115.57975	-0.73069	-0.00040831	2.9319	0.0016383	2.2012	0.00123	558.7988443130214	30.442	0.88516	30.264	29.782	30.667	-0.17818					25	20	2	0	0	0	0.03519	1	1993	1993		35.618	6.4687	1	127260	+		71819	30011	50328	50411	78442	78442					0.026583759795585138
SFIRLTLEL	9	Unmodified	_SFIRLTLEL_					0	0	0		MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MEI1|p.G1218Wfs*14|1|0.39|ENSG00000167077|chr22:41795526-41795527|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8134155273438	2	546.326599	1090.63865	0.0056389	3.0807E-06	-0.35823	-0.00019571	-0.35259	-0.00019263	546.3255501945832	69.811	0.24691	69.518	69.386	69.633	-0.29291					6	5	2	0	0	0	0.024447	1	8379	8379		25.574	0	1	38371			71820	7644	50329	50412	78443	78443					0.09695175545516577
SFIVSIRPV	9	Unmodified	_SFIVSIRPV_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF;REV__ATXN10-TUBGCP6|1|fusion	REV__ATXN10-TUBGCP6|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.3057861328125	2	509.30821	1016.60187	0.65142	0.00033177	-3.9739	-0.002024	-3.3225	-0.0016922	509.306008117109	97.837	0.37898	97.835	97.635	98.014	-0.0020752					13	8	2	0	0	0	0.85329	1	12421	12421		35.618	4.0885	1	80580	+		71821	33886;19190	50330	50413	78444	78444					0.09422923719614573
SFKCEVDKLTL	11	Unmodified	_SFKCEVDKLTL_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B;REV__ENST00000442354.1_1_9:44052481-44067763:-|nuORF	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8422241210938	2	641.839213	1281.66387	1.9106	0.0012263	0.24685	0.00015844	2.1575	0.0013848	641.8395243486109	109.95	0.55971	109.95	109.79	110.35	0					37	18	4	0	0	0	1.0233	1	13972	13972		31.634	1.3165	1	397160	+		71822	28893;32559	50331	50414	78445	78445					0.03430862285767944
SFKRRYTF	8	Unmodified	_SFKRRYTF_					0	0	0			REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A	REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8008422851562	2	552.801083	1103.58761	0.70932	0.00039212	-1.4238	-0.0007871	-0.71451	-0.00039498	552.8002230231247	19.43	0.74376	19.23	18.958	19.701	-0.2001					37	14	4	0	0	0	0.99042	1	431	431		38.806	0.99462	1	964640	+		71823	21258	50332	50415	78446	78446					0.03996271291316589
SFKSHLFL	8	Unmodified	_SFKSHLFL_					0	0	0			REV__ENST00000366855.10_1_6:167366013-167369926:-|nuORF	REV__ENST00000366855.10_1_6:167366013-167369926:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.7451477050781	2	489.774003	977.533452	-0.37678	-0.00018454	-2.674	-0.0013097	-3.0508	-0.0014942	489.7720492081551	43.04	0.75029	42.814	42.559	43.31	-0.22597					41	19	4	0	0	0	0.027866	1	3869	3869		30.504	13.139	1	947580	+		71824	30991	50333	50416	78447	78447					0.04378679139745145
SFKYNSLL	8	Unmodified	_SFKYNSLL_					0	0	0		ENST00000523812.1_1_8:144357822-144358971:+|nuORF;ENSG00000250571|ENST00000340042|GLI4	ENST00000523812.1_1_8:144357822-144358971:+|nuORF	ENST00000523812.1_1_8:144357822-144358971:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.28887939453125	2	486.263468	970.512382	1.4355	0.00069801	-0.30485	-0.00014824	1.1306	0.00054978	486.2629466082652	59.04	0.64664	58.853	58.611	59.258	-0.18705					43	17	3	0	0	0	0.027866	1	6658	6658		42.396	0	1	1779700			71825	16051	50334	50417	78448	78448					0.025946690402406603
SFLAIEDET	9	Unmodified	_SFLAIEDET_					0	0	0			REV__nc|ENSG00000069667|P35398-4|RORA	REV__nc|ENSG00000069667|P35398-4|RORA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7692565917969	2	512.745305	1023.47606	0.28959	0.00014848	-0.31007	-0.00015899	-0.020486	-1.0504E-05	512.7452462646806	86.461	0.60559	86.461	86.085	86.69	0					18	13	2	0	0	0	0.024294	1	10833	10833		55.504	0	1	83755	+		71826	20404	50335	50418	78449	78449					-0.03474252647151843
SFLEITKDL	9	Unmodified	_SFLEITKDL_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.77392578125	2	533.294965	1064.57538	0.23859	0.00012724	-0.49597	-0.0002645	-0.25738	-0.00013726	533.2945069274052	96.345	1.8631	96.352	95.905	97.768	0.0065079					73	42	3	0	0	0	0.024511	1	12437	12437		19.104	0	1	1159600	+		71827	26149	50336	50419	78450	78450					0.04567190037596447
SFLEPAGIWG	10	Unmodified	_SFLEPAGIWG_					0	0	0		ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.7744140625	2	538.7742	1075.53385	-0.45343	-0.0002443	0.58718	0.00031636	0.13376	7.2064E-05	538.7744382730586	75.065	0.90402	74.802	74.489	75.393	-0.26326					63	21	4	0	0	0	0.47726	2	8879	8879;8894		90.777	4.3219	1	3498100			71828	16423	50337	50420	78451;78452	78451					-0.0008994593106308457
SFLEPHLTI	9	Unmodified	_SFLEPHLTI_					0	0	0			REV__ENST00000513001.5_1_4:185678281-185679089:-|nuORF	REV__ENST00000513001.5_1_4:185678281-185679089:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.2474975585938	2	528.78985	1055.56515	0.35949	0.0001901	2.7513	0.0014549	3.1108	0.001645	528.7905343422343	59.462	0.48914	59.265	59.009	59.499	-0.19742					23	11	3	0	0	0	0.024506	1	6536	6536		30.504	10.022	1	163000	+		71829	24791	50338	50421	78453	78453					0.03958627103043
SFLFPVSTK	9	Unmodified	_SFLFPVSTK_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7693481445312	2	513.286943	1024.55933	-1.2484	-0.0006408	2.5206	0.0012938	1.2722	0.000653	513.2885088878797	38.888	0.41672	38.724	38.554	38.971	-0.16458					14	11	2	0	0	0	0.024457	1	3229	3229		10.265	0	1	184980	+		71830	26015	50339	50422	78454	78454					0.04803528591378381
SFLFSLLK	8	Unmodified	_SFLFSLLK_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MSMS	OPSCC_39_ClassI_Rep-2	2	477.7897033691406	2	477.786579	953.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.23	1	112.22	111.72	112.72	-0.012985								0	0	0	1.2781	1	14042	14042		8.2313	0	1		+		71831	19848	50340	50423	78455	78455					0.07996733942343326
SFLKKEGLT	9	Unmodified	_SFLKKEGLT_					0	0	0		nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10;nc|ENSG00000172728|Q6P4F1-7|FUT10;ENST00000518076.1_1_8:33247301-33311025:-|nuORF;ENST00000416169.5_1_8:33310680-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF	nc|ENSG00000172728|Q6P4F1-6|FUT10;nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-6|FUT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.8083190917969	2	511.797675	1021.5808	-0.08227	-4.2106E-05	-2.8659	-0.0014668	-2.9482	-0.0015089	511.7958802248543	22.275	0.47694	22.073	21.808	22.285	-0.20199					13	9	2	0	0	0	0.024263	1	727	727		51.335	0	1	43330			71832	8298;15991	50341	50424	78456	78456					0.07086913620082669
SFLKKEGLT	9	Unmodified	_SFLKKEGLT_					0	0	0		nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10;nc|ENSG00000172728|Q6P4F1-7|FUT10;ENST00000518076.1_1_8:33247301-33311025:-|nuORF;ENST00000416169.5_1_8:33310680-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF	nc|ENSG00000172728|Q6P4F1-6|FUT10;nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-6|FUT10	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	511.797675	1021.5808	-0.77785	-0.0003981	-2.2414	-0.0011471	-3.0192	-0.0015452	511.79638010032426	21.892	0.66198	21.892	21.676	22.338	0	-0.075749	-6.5742E-05	NaN	51.335	41	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	681070			71833	8298;15991	50341	50424							0.07086913620082669
SFLKLAELF	9	Unmodified	_SFLKLAELF_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;ENST00000530101.5_1_11:65619099-65623644:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.280517578125	2	534.310418	1066.60628	0.17691	9.4523E-05	3.1635	0.0016903	3.3404	0.0017848	534.3115458508724	83.946	0.59973	83.777	83.409	84.009	-0.16915					24	13	3	0	0	0	0.024541	1	10177	10177		17.365	0	1	125790			71834	8311	50342	50425	78457	78457					0.07564388142509415
SFLKLAELF	9	Unmodified	_SFLKLAELF_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;ENST00000530101.5_1_11:65619099-65623644:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.310418	1066.60628	0.36284	0.00019387	2.713	0.0014496	3.0759	0.0016435	534.3118898893956	84.064	0.72771	83.853	83.6	84.327	-0.21159	0.048553	-0.00023645	NaN	11.511	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183950			71835	8311	50342	50425							0.07564388142509415
SFLKLAELF	9	Unmodified	_SFLKLAELF_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;ENST00000530101.5_1_11:65619099-65623644:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.310418	1066.60628	-0.061254	-3.2728E-05	3.2186	0.0017197	3.1573	0.001687	534.3120176558853	83.921	0.56044	83.783	83.547	84.108	-0.13789	-0.021096	0.00030377	NaN	11.511	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135190			71836	8311	50342	50425							0.07564388142509415
SFLLLLAF	8	Unmodified	_SFLLLLAF_					0	0	0		ENSG00000175206|ENST00000376480|NPPA	ENSG00000175206|ENST00000376480|NPPA	ENSG00000175206|ENST00000376480|NPPA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.2510070800781	2	462.283672	922.552791	-0.86234	-0.00039865	-4.1057	-0.001898	-4.9681	-0.0022967	462.2814723174257	30.023	0.5885	29.845	29.655	30.243	-0.17818					16	13	2	0	0	0	0.027866	1	1906	1906		46.766	3.1404	1	115180			71837	8538	50343	50426	78458	78458					0.0884163543065597
SFLLLLAF	8	Unmodified	_SFLLLLAF_					0	0	0		ENSG00000175206|ENST00000376480|NPPA	ENSG00000175206|ENST00000376480|NPPA	ENSG00000175206|ENST00000376480|NPPA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.283672	922.552791	-0.11277	-5.2132E-05	-3.9402	-0.0018215	-4.053	-0.0018736	462.281601779155	30.05	0.34716	29.901	29.709	30.056	-0.14952	0.027919	4.1308E-05	NaN	46.766	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114950			71838	8538	50343	50426							0.0884163543065597
SFLPAPSL	8	Unmodified	_SFLPAPSL_					0	0	0			REV__ENSG00000054277|ENST00000366554|OPN3	REV__ENSG00000054277|ENST00000366554|OPN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2457580566406	2	416.234179	830.453805	-0.61407	-0.0002556	0.38803	0.00016151	-0.22604	-9.4084E-05	416.2352557619184	28.517	0.59358	28.348	28.048	28.641	-0.16897					17	13	2	0	0	0	0.027866	1	1697	1697		60.294	26.778	1	49549	+		71839	20187	50344	50427	78459	78459					0.031796124657603286
SFLPAPSL	8	Unmodified	_SFLPAPSL_					0	0	0			REV__ENSG00000054277|ENST00000366554|OPN3	REV__ENSG00000054277|ENST00000366554|OPN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	416.234179	830.453805	-1.5944	-0.00066363	6.4997	0.0027054	4.9053	0.0020418	416.23652447554895	28.845	0.30196	28.599	28.363	28.665	-0.24524	0.11424	-7.7162E-05	NaN	60.294	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35397	+		71840	20187	50344	50427							0.031796124657603286
SFLQEMPNV	9	Unmodified	_SFLQEMPNV_					0	0	0		ENSG00000189367|ENST00000483725|KIAA0408;nc|ENSG00000189367|Q6ZU52-2|KIAA0408;ENST00000368281.1_1_6:127765256-127771512:-|nuORF	ENSG00000189367|ENST00000483725|KIAA0408	ENSG00000189367|ENST00000483725|KIAA0408	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.31103515625	2	532.757692	1063.50083	-0.73746	-0.00039289	-3.8599	-0.0020564	-4.5973	-0.0024493	532.7554836131758	35.307	0.42695	35.12	34.873	35.3	-0.18675					18	10	2	0	0	0	0.024397	1	2657	2657		47.657	8.8512	1	185900			71841	9806	50345	50428	78460	78460					-0.028378960454119806
SFLRQIEEL	9	Unmodified	_SFLRQIEEL_					0	0	0		ENST00000471909.1_1_21:45217249-45223652:+|nuORF	ENST00000471909.1_1_21:45217249-45223652:+|nuORF	ENST00000471909.1_1_21:45217249-45223652:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.309326171875	2	567.811313	1133.60807	-0.73961	-0.00041996	-0.32741	-0.00018591	-1.067	-0.00060587	567.8110026780193	69.187	1.6595	69.187	68.369	70.029	0					137	42	5	0	0	0	0.086035	1	8412	8412		115.49	0	1	14091000			71842	14976	50346	50429	78461	78461					0.04661397160475644
SFMKQFID	8	Unmodified	_SFMKQFID_					0	0	0		ENSG00000102452|ENST00000251127|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2868957519531	2	508.249503	1014.48445	0.17458	8.8729E-05	-1.8683	-0.00094957	-1.6937	-0.00086084	508.24915985681355	53.252	0.79395	52.993	52.683	53.477	-0.25839					40	20	3	0	0	0	0.027866	1	5519	5519		53.351	0	1	1537900			71843	2409	50347	50430	78462	78462					-0.0222097721150476
SFPDLYAN	8	Unmodified	_SFPDLYAN_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.77947998046875	2	463.71635	925.418148	0.91704	0.00042525	1.9466	0.00090267	2.8636	0.0013279	463.7174022132048	67.92	0.33915	67.939	67.819	68.158	0.018921					13	8	2	0	0	0	0.027866	1	8052	8052		18.324	0	1	99929			71844	18142	50348	50431	78463	78463					-0.04754469781903481
SFPEPGRLY	9	Unmodified	_SFPEPGRLY_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3109741210938	2	533.271824	1064.5291	-0.84737	-0.00045188	-1.2893	-0.00068757	-2.1367	-0.0011394	533.271108654134	35.137	0.83228	34.924	34.401	35.233	-0.21246					30	20	2	0	0	0	0.024539	1	2682	2682		27.882	0	1	332950			71845	8009	50349	50432	78464	78464					-0.0005883007379452465
SFPEVWLLNN	10	Unmodified	_SFPEVWLLNN_					0	0	0		ENST00000592580.5_1_6:170151753-170155539:+|nuORF	ENST00000592580.5_1_6:170151753-170155539:+|nuORF	ENST00000592580.5_1_6:170151753-170155539:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.8753356933594	3	406.876634	1217.60807	0.386	0.00015705	4.1101	0.0016723	4.4961	0.0018294	406.8778364532396	20.056	1.7952	19.888	19.423	21.219	-0.16774					91	36	6	0	0	0	1.0909	1	479	479		33.922	5.3449	1	2785500			71846	17375	50350	50433	78465	78465					0.007973971604997132
SFPHTYIR	8	Unmodified	_SFPHTYIR_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2875671386719	2	510.766709	1019.51886	0.016695	8.5272E-06	2.4152	0.0012336	2.4319	0.0012421	510.7660859599443	71.685	0.39832	71.423	71.2	71.598	-0.26199					14	9	2	0	0	0	0.027866	1	8394	8394		38.806	12.01	1	165130			71847	8945	50351	50434	78466	78466					0.009886069915978624
SFPSWSPPAP	10	Unmodified	_SFPSWSPPAP_					0	0	0			REV__ENST00000357166.10_1_X:128975958-128977712:-|nuORF	REV__ENST00000357166.10_1_X:128975958-128977712:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.764892578125	2	536.758549	1071.50255	-0.51204	-0.00027484	0.90564	0.00048611	0.3936	0.00021127	537.2611852647221	90.525	0.25356	90.508	90.276	90.529	-0.016716					8	5	2	0	0	0	0.03519	1	11395	11395		16.473	0	1	45971	+		71848	30821	50352	50435	78467	78467					-0.030345189651370674
SFPVMLGMA	9	Unmodified	_SFPVMLGMA_					0	0	0			REV__ENSG00000183605|ENST00000355697|SFXN4	REV__ENSG00000183605|ENST00000355697|SFXN4	MSMS	OPSCC_40_ClassI_Rep-3	6	476.7390441894531	2	476.735174	951.455795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.714	1	16.46	15.96	16.96	-0.25378								0	0	0	0.70415	1	77	77		19.36	3.7182	1		+		71849	27588	50353	50436	78468	78468					-0.021874181122825576
SFQILLMVL	9	Unmodified	_SFQILLMVL_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.26611328125	2	532.314646	1062.61474	-0.24019	-0.00012785	3.5679	0.0018992	3.3277	0.0017714	532.3163415170477	34.017	0.27967	33.792	33.68	33.96	-0.22412					9	6	2	0	0	0	0.024506	1	2456	2456		30.504	20.238	1	69978	+		71850	21377	50354	50437	78469	78469					0.08593618787494961
SFRNTKITL	9	Unmodified	_SFRNTKITL_					0	0	0		nc|ENSG00000135930|O60573-2|EIF4E2;ENST00000459714.1_1_2:233438796-233445650:+|nuORF	nc|ENSG00000135930|O60573-2|EIF4E2	nc|ENSG00000135930|O60573-2|EIF4E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.2921142578125	2	540.314023	1078.61349	-0.25611	-0.00013838	0.30984	0.00016741	0.053733	2.9032E-05	540.8147663664973	72.223	0.24209	71.948	71.829	72.071	-0.27509					6	5	2	0	0	0	0.024484	1	8463	8463		37.812	13.609	1	29680			71851	18301	50355	50438	78470	78470					0.07733120742932442
SFRQRSFRK	9	Unmodified	_SFRQRSFRK_					0	0	0			REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	606.8187255859375	2	606.341438	1210.66832	-0.44181	-0.00026789	-2.9332	-0.0017785	-3.375	-0.0020464	606.3396458922783	101.53	0.31017	101.54	101.43	101.74	0.0090332					10	6	2	0	0	0	0.024511	1	12966	12966		40.778	18.818	1	33449	+		71852	32213	50356	50439	78471	78471					0.07141552334201151
SFRQRSFRK	9	Unmodified	_SFRQRSFRK_					0	0	0			REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	606.341438	1210.66832	0.017173	1.0413E-05	0.8684	0.00052655	0.88557	0.00053696	606.3416876591273	101.36	0.21168	101.23	101.07	101.28	-0.12576	-0.11647	0.0017345	NaN	25.574	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29751	+		71853	32213	50356	50439							0.07141552334201151
SFRSGGSRSF	10	Unmodified	_SFRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.266357421875	2	544.267604	1086.52066	-0.93019	-0.00050627	0.45214	0.00024608	-0.47805	-0.00026018	544.2678957380646	35.941	2.7271	35.736	35.186	37.913	-0.20518					199	72	5	0	0	0	0.67616	3	2760	2760;2795;2807		68.846	8.403	1	54405000		+	71854	520;569;17808	50357	50440	78472;78473;78474	78472					-0.019143839904245397
SFRSGGSRSF	10	Unmodified	_SFRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2675170898438	2	544.267604	1086.52066	-0.25026	-0.00013621	-0.30822	-0.00016776	-0.55849	-0.00030397	544.2674991425346	35.901	2.7528	35.684	35.15	37.903	-0.21661					212	72	5	0	0	0	0.54901	4	2817	2747;2794;2817;2841		82.75	8.6939	1	66783000		+	71855	520;569;17808	50357	50440	78475;78476;78477;78478	78477					-0.019143839904245397
SFRSGGSRSF	10	Unmodified	_SFRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.267333984375	2	544.267604	1086.52066	-0.31654	-0.00017228	-0.28629	-0.00015582	-0.60282	-0.0003281	544.2675216665498	35.757	3.1662	35.558	34.937	38.103	-0.19829					255	84	6	0	0	0	0.50091	5	2824	2751;2763;2788;2812;2824		88.177	9.9132	1	110170000		+	71856	520;569;17808	50357	50440	78479;78480;78481;78482;78483	78483					-0.019143839904245397
SFRTHTSG	8	Unmodified	_SFRTHTSG_					0	0	0		ENST00000562206.1_1_16:67427281-67427320:-|nuORF;ENST00000393957.6_1_16:67424926-67427410:-|nuORF	ENST00000562206.1_1_16:67427281-67427320:-|nuORF	ENST00000562206.1_1_16:67427281-67427320:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.25140380859375	2	446.717216	891.419879	-0.6234	-0.00027848	1.5407	0.00068824	0.91727	0.00040976	446.7177620107883	25.204	0.44382	25.204	24.919	25.363	0					15	10	2	0	0	0	0.027866	1	1183	1183		12.207	0	1	179270			71857	13478	50358	50441	78484	78484					-0.030174159732723638
SFRVLQHQDG	10	Unmodified	_SFRVLQHQDG_					0	0	0			REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.801811	1185.58907	-0.22649	-0.00013449	-0.19073	-0.00011326	-0.41722	-0.00024775	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.91678	1	2776	2776		52.937	0	1	111520000	+		71858	26053	50359	50442	78485	78485					0.0036986058939874056
SFRVYIMAF	9	Unmodified	_SFRVYIMAF_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.2935180664062	2	567.294245	1132.57394	0.54848	0.00031115	-0.90047	-0.00051083	-0.35198	-0.00019968	567.2937013694984	20.272	0.88687	20.341	20.069	20.956	0.068901					42	17	4	0	0	0	0.33245	1	480	480		71.296	12.514	1	287210			71859	7403	50360	50443	78486	78486					0.012952774678524293
SFRVYIMAF	9	Unmodified	_SFRVYIMAF_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	567.294245	1132.57394	-1.1531	-0.00065413	0.76866	0.00043606	-0.3844	-0.00021807	567.294589795973	20.154	0.72867	20.154	19.88	20.609	0	-0.11151	0.00076701	NaN	71.296	39	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330520			71860	7403	50360	50443							0.012952774678524293
SFSAMHVL	8	Unmodified	_SFSAMHVL_					0	0	0			REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.89654541015625	2	446.223288	890.432024	-0.37725	-0.00016834	-4.2576	-0.0018998	-4.6348	-0.0020682	446.22130320005374	23.834	0.98609	23.834	23.399	24.385	0					59	22	4	0	0	0	0.027866	1	1039	1039		37.028	0	1	608090	+		71861	27865	50361	50444	78487	78487					-0.017575155544591325
SFSFTSSSEA	10	Unmodified	_SFSFTSSSEA_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3031005859375	2	525.224736	1048.43492	-0.37292	-0.00019587	0.59403	0.000312	0.22111	0.00011613	525.2246801737941	42.759	0.42023	42.525	42.383	42.803	-0.23413					13	10	2	0	0	0	0.03519	1	3883	3883		37.159	3.6435	1	101480	+		71862	28289	50362	50445	78488	78488					-0.08736013686620936
SFSGVRKLVLN	11	Unmodified	_SFSGVRKLVLN_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	610.3602905273438	2	610.361505	1218.70846	-1.1272	-0.00068798	-0.2356	-0.0001438	-1.3628	-0.00083178	610.3612644945106	46.068	0.62709	45.916	45.683	46.31	-0.15156					50	17	4	0	0	0	1.0233	1	4516	4516		31.634	1.3165	1	3967400			71863	6381	50363	50446	78489	78489					0.10785054214125012
SFSGVRKLVLN	11	Unmodified	_SFSGVRKLVLN_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	610.361505	1218.70846	-0.87674	-0.00053513	-0.62307	-0.0003803	-1.4998	-0.00091543	610.361025813009	46.095	0.62882	46.095	45.818	46.447	0	0.089481	-0.00032068	NaN	31.634	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1194400			71864	6381	50363	50446							0.10785054214125012
SFSLSLLVS	9	Unmodified	_SFSLSLLVS_					0	0	0		ENST00000493504.1_1_19:59094431-59094902:+|nuORF	ENST00000493504.1_1_19:59094431-59094902:+|nuORF	ENST00000493504.1_1_19:59094431-59094902:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.3054504394531	2	476.771126	951.527698	0.057926	2.7617E-05	-2.945	-0.0014041	-2.8871	-0.0013765	476.7697111291741	91.652	0.55681	91.639	91.363	91.92	-0.012383					19	12	2	0	0	0	0.024323	1	11562	11562		35.618	12.576	1	85251			71865	15505	50364	50447	78490	78490					0.04999535837430358
SFSLVVDSKSL	11	Unmodified	_SFSLVVDSKSL_					0	0	0			REV__ENSG00000163618|ENST00000383710|CADPS;REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	591.3246459960938	2	591.324254	1180.63395	-1.4662	-0.000867	2.1476	0.0012699	0.68143	0.00040295	591.3254184693396	47.222	0.88713	47.222	46.892	47.779	0					74	25	4	0	0	0	0.82076	1	4725	4725		56.434	1.6575	1	3603500	+		71866	25601;36854	50365	50448	78491	78491					0.0508624661210888
SFSNSYGR	8	Unmodified	_SFSNSYGR_					0	0	0		ENSG00000175718|ENST00000424776|RBMXL3	ENSG00000175718|ENST00000424776|RBMXL3	ENSG00000175718|ENST00000424776|RBMXL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2252502441406	2	459.209224	916.403895	-0.29508	-0.0001355	-4.0853	-0.001876	-4.3803	-0.0020115	459.20696349158317	26.069	0.17802	25.901	25.809	25.988	-0.16816					7	5	2	0	0	0	0.027866	1	1311	1311		23.042	0	1	147900			71867	8585	50366	50449	78492	78492					-0.05765122210186746
SFSPFQSRPE	10	Unmodified	_SFSPFQSRPE_					0	0	0		ENST00000468845.1_1_1:153945363-153946538:+|nuORF;nc|ENSG00000143578|Q8TEY5-2|CREB3L4;ENSG00000143578|ENST00000368607|CREB3L4	ENST00000468845.1_1_1:153945363-153946538:+|nuORF	ENST00000468845.1_1_1:153945363-153946538:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	592.275634765625	2	591.28292	1180.55129	0.30048	0.00017767	3.0737	0.0018174	3.3741	0.0019951	591.2845941803183	68.092	0.77605	67.837	67.412	68.188	-0.25516					45	18	4	0	0	0	0.03519	1	7896	7896		9.7057	2.9701	1	1282700			71868	5668	50367	50450	78493	78493					-0.03176650396017067
SFSSLCFYYL	10	Unmodified	_SFSSLCFYYL_					0	0	0			REV__ENST00000571542.5_3_17:18627112-18630898:+|nuORF	REV__ENST00000571542.5_3_17:18627112-18630898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.8915710449219	3	410.523092	1228.54745	-0.3088	-0.00012677	0.36649	0.00015045	0.057694	2.3685E-05	410.5232579279165	28.503	0.5556	28.334	28.171	28.727	-0.16897					18	12	2	0	0	0	0.03519	1	1663	1663		20.03	0	1	45339	+		71869	35404	50368	50451	78494	78494					-0.05768456214127582
SFSTLIGL	8	Unmodified	_SFSTLIGL_					0	0	0		ENSG00000078403|ENST00000307729|MLLT10;nc|ENSG00000078403|P55197-1|MLLT10	ENSG00000078403|ENST00000307729|MLLT10	ENSG00000078403|ENST00000307729|MLLT10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	418.8848876953125	2	419.239461	836.46437	-0.35443	-0.00014859	3.1222	0.001309	2.7678	0.0011604	419.2402735718065	36.845	0.35767	36.629	36.491	36.849	-0.21661					11	8	2	0	0	0	0.027866	1	2941	2941		29.842	0	1	61029			71870	1636	50369	50452	78495	78495					0.03959595120193171
SFSTVCFILSL	11	Unmodified	_SFSTVCFILSL_					0	0	0		ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6	ENSG00000163029|ENST00000448223|SMC6	ENSG00000163029|ENST00000448223|SMC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.8173828125	2	608.81775	1215.62095	-0.73996	-0.0004505	-0.5369	-0.00032687	-1.2769	-0.00077738	608.8173104468444	99.781	1.2722	99.776	99.343	100.62	-0.0050888					86	32	5	0	0	0	0.95124	1	12694	12694		47.657	0	1	4634500			71871	7028	50370	50453	78496	78496					0.021760922283647233
SFTDLNKTTC	10	Unmodified	_SFTDLNKTTC_					0	0	0			REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	REV__ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.77734375	2	565.263339	1128.51212	-0.1311	-7.4106E-05	-0.44645	-0.00025236	-0.57755	-0.00032647	565.2631176163273	46.312	1.2147	46.051	45.701	46.916	-0.26118					43	32	2	0	0	0	0.03519	1	4518	4518		25.574	0	1	251010	+		71872	32158	50371	50454	78497	78497					-0.04699118741928032
SFTFRKLS	8	Unmodified	_SFTFRKLS_					0	0	0			REV__ENST00000370982.3_1_1:68171034-68171088:-|nuORF	REV__ENST00000370982.3_1_1:68171034-68171088:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2784423828125	2	493.276909	984.539266	-0.50596	-0.00024958	3.7492	0.0018494	3.2433	0.0015998	493.27865839372055	20.663	1.3767	20.44	20.216	21.593	-0.22344					51	27	2	0	0	0	0.97924	1	531	531		40.573	1.7665	1	584800	+		71873	31147	50372	50455	78498	78498					0.04637777651419128
SFTGERQKAKP	11	Unmodified	_SFTGERQKAKP_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.894775390625	3	416.894688	1247.66223	-0.52087	-0.00021715	-3.5182	-0.0014667	-4.0391	-0.0016839	417.2263431597182	30.492	1.3368	30.248	29.655	30.992	-0.24415					56	31	2	0	0	0	1.0013	1	1907	1907		36.528	0.21026	1	1938100	+		71874	20653	50373	50456	78499	78499					0.04830989312040401
SFTKPLFLS	9	Unmodified	_SFTKPLFLS_					0	0	0			REV__ENSG00000182329|ENST00000498697|KIAA2012	REV__ENSG00000182329|ENST00000498697|KIAA2012	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2767944335938	2	520.294768	1038.57498	5.0172	0.0026104	-4.1952	-0.0021828	0.82199	0.00042768	520.2923009720865	17.184	0.11035	17.244	17.177	17.287	0.06036					4	2	2	0	0	0	0.024344	1	107	107		45.972	20.398	1	6156.7	+		71875	27470	50374	50457	78500	78500					0.05723815108422059
SFTKVTKDKDI	11	Unmodified	_SFTKVTKDKDI_					0	0	0		nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1	nc|ENSG00000163564|Q6K0P9-4|PYHIN1	nc|ENSG00000163564|Q6K0P9-4|PYHIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.22540283203125	3	427.906482	1280.69762	0.51731	0.00022136	-2.8062	-0.0012008	-2.2889	-0.00097944	428.23866615507137	25.491	0.20683	25.571	25.499	25.706	0.080088					5	4	2	0	0	0	0.024765	1	1165	1165		39.873	9.3043	1	14017			71876	18448	50375	50458	78501	78501					0.0684960704918467
SFTLLKNL	8	Unmodified	_SFTLLKNL_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7556457519531	2	468.28166	934.548768	0.10123	4.7402E-05	-3.1777	-0.001488	-3.0764	-0.0014406	468.280036751479	93.853	1.9652	93.859	93.349	95.314	0.0059814					69	46	3	0	0	0	0.027866	1	11941	11941		25.45	0	1	1309700	+		71877	24526	50376	50459	78502	78502					0.07887545936932838
SFTLLLAA	8	Unmodified	_SFTLLLAA_					0	0	0		PCDH8|p.C760F|1|0.05|ENSG00000136099|chr13:52846158-52846158|C/A|missense_variant	PCDH8|p.C760F|1|0.05|ENSG00000136099|chr13:52846158-52846158|C/A|missense_variant	PCDH8|p.C760F|1|0.05|ENSG00000136099|chr13:52846158-52846158|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	418.88677978515625	2	418.249829	834.485105	-0.11742	-4.9112E-05	-2.1793	-0.00091149	-2.2967	-0.0009606	418.24916763689896	22.814	0.6006	22.739	22.411	23.011	-0.075296					13	12	2	0	0	0	0.027866	1	814	814		29.842	9.3597	1	23527			71878	18945	50377	50460	78503	78503					0.061241854998343115
SFVEIGFLSG	10	Unmodified	_SFVEIGFLSG_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2733154296875	2	528.274032	1054.53351	-1.3541	-0.00071536	0.096189	5.0814E-05	-1.2579	-0.00066454	528.2741255285842	92.005	2.5491	92.005	91.299	93.848	0					227	60	6	0	0	0	0.62431	2	11722	11722;11770		74.255	0	1	45968000	+		71879	20141	50378	50461	78504;78505	78504					0.008426343491009902
SFVEIGFLSG	10	Unmodified	_SFVEIGFLSG_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2734985351562	2	528.274032	1054.53351	-0.65496	-0.000346	-0.44814	-0.00023674	-1.1031	-0.00058274	528.2738695912601	92.008	2.8556	91.999	91.326	94.181	-0.0082932					232	68	6	0	0	0	0.71272	1	11755	11755		66.429	3.123	1	52333000	+		71880	20141	50378	50461	78506	78506					0.008426343491009902
SFVEIGFLSG	10	Unmodified	_SFVEIGFLSG_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2737426757812	2	528.274032	1054.53351	0.37056	0.00019576	-1.6261	-0.00085902	-1.2555	-0.00066326	528.2732281795522	92.046	2.9306	92.056	91.359	94.289	0.0094147					197	70	4	0	0	0	0.74632	1	11693	11693		64.207	0	1	55644000	+		71881	20141	50378	50461	78507	78507					0.008426343491009902
SFVEIGFLSG	10	Unmodified	_SFVEIGFLSG_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2737426757812	2	528.274032	1054.53351	-1.7092	-0.00090294	1.5281	0.00080726	-0.18111	-9.5678E-05	528.2746774467289	91.967	1.0034	91.818	91.439	92.442	-0.1487					59	23	3	0	0	0	0.71272	1	11266	11266		66.429	3.123	1	1513500	+		71882	20141	50378	50461	78508	78508					0.008426343491009902
SFVKHRQI	8	Unmodified	_SFVKHRQI_					0	0	0		ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENST00000497693.1_1_9:37428391-37428742:+|nuORF	ENST00000493368.5_1_9:37422710-37428742:+|nuORF	ENST00000493368.5_1_9:37422710-37428742:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7948913574219	2	507.795801	1013.57705	0.28344	0.00014393	-2.3928	-0.001215	-2.1093	-0.0010711	507.79470644317075	78.999	0.84277	78.745	78.427	79.27	-0.25471					50	19	4	0	0	0	0.93437	1	9424	9424		47.657	1.6851	1	1045900			71883	15499	50379	50462	78509	78509					0.07080288636893783
SFVKSNKIF	9	Unmodified	_SFVKSNKIF_					0	0	0		ENST00000357388.7_1_3:160151664-160151871:+|nuORF	ENST00000357388.7_1_3:160151664-160151871:+|nuORF	ENST00000357388.7_1_3:160151664-160151871:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3165283203125	2	535.305667	1068.59678	-0.98581	-0.00052771	0.025511	1.3656E-05	-0.9603	-0.00051405	535.3054542267982	44.045	0.54198	43.94	43.661	44.203	-0.10468					31	14	3	0	0	0	0.024374	1	4086	4086		40.778	0	1	571630			71884	12692	50380	50463	78510	78510					0.06522619856968959
SFVKTQKTI	9	Unmodified	_SFVKTQKTI_					0	0	0		ENST00000447898.1_22:16151473-16151611:-|nuORF	ENST00000447898.1_22:16151473-16151611:-|nuORF	ENST00000447898.1_22:16151473-16151611:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2927856445312	2	526.310949	1050.60735	-0.41806	-0.00022003	-0.86215	-0.00045376	-1.2802	-0.00067379	526.3104767635548	62.429	0.31065	62.208	61.965	62.276	-0.22097					18	7	3	0	0	0	0.024541	1	6996	6996		17.365	0	1	538960			71885	14475	50381	50464	78511	78511					0.08406602511445271
SFVKTQKTI	9	Unmodified	_SFVKTQKTI_					0	0	0		ENST00000447898.1_22:16151473-16151611:-|nuORF	ENST00000447898.1_22:16151473-16151611:-|nuORF	ENST00000447898.1_22:16151473-16151611:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.310949	1050.60735	-0.95367	-0.00050193	0.2154	0.00011337	-0.73827	-0.00038856	526.310922624872	62.374	0.38077	62.196	61.963	62.343	-0.17781	-0.019629	0.00075137	NaN	40.778	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522240			71886	14475	50381	50464							0.08406602511445271
SFVLPFFGL	9	Unmodified	_SFVLPFFGL_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.8059692382812	2	513.786579	1025.5586	0.8729	0.00044849	3.2512	0.0016704	4.1241	0.0021189	513.7882462703213	70.997	0.34308	70.704	70.455	70.798	-0.29291					12	7	2	0	0	0	0.024325	1	8560	8560		40.573	5.3719	1	236860			71887	10182	50382	50465	78512	78512					0.04684733942326602
SFVPALIIL	9	Unmodified	_SFVPALIIL_					0	0	0		ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	ENSG00000084453|ENST00000683939|SLCO1A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7609558105469	2	486.810054	971.605554	-0.17897	-8.7124E-05	-4.0428	-0.0019681	-4.2218	-0.0020552	486.80786698417586	25.606	0.4467	25.435	25.288	25.735	-0.17078					14	10	2	0	0	0	0.024517	1	1216	1216		7.6903	0	1	131810			71888	1769	50383	50466	78513	78513					0.11861593493483724
SFVPLCSGALG	11	Unmodified	_SFVPLCSGALG_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.765625	2	525.76806	1049.52157	-0.32634	-0.00017158	-4.0928	-0.0021518	-4.4191	-0.0023234	525.7658959057911	30.739	1.2718	30.813	30.42	31.691	0.074314					86	30	4	0	0	0	0.93615	1	1963	1963		49.442	6.9671	1	3654900	+		71889	20672	50384	50467	78514	78514					-0.001213056657661582
SFVRALGFD	9	Unmodified	_SFVRALGFD_					0	0	0			REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.26715087890625	2	506.266542	1010.51853	-0.33507	-0.00016964	-4.2541	-0.0021537	-4.5892	-0.0023233	506.2639188096115	45.214	0.71574	44.961	44.709	45.425	-0.25252					50	19	4	0	0	0	0.67687	1	4247	4247		47.657	1.7054	1	2651300	+		71890	25070	50385	50468	78515	78515					0.01369187271757255
SFVRALGFD	9	Unmodified	_SFVRALGFD_					0	0	0			REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.266542	1010.51853	-0.7756	-0.00039266	0.28995	0.00014679	-0.48566	-0.00024587	506.2665809933079	44.901	0.62112	44.901	44.657	45.278	0	-0.068333	0.00021111	NaN	47.657	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	941350	+		71891	25070	50385	50468							0.01369187271757255
SFVRALGFD	9	Unmodified	_SFVRALGFD_					0	0	0			REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.266542	1010.51853	-0.86219	-0.0004365	0.75899	0.00038425	-0.1032	-5.2246E-05	506.266720618778	45.105	0.51651	44.956	44.73	45.247	-0.1488	-0.01321	0.00068604	NaN	47.657	45	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1143100	+		71892	25070	50385	50468							0.01369187271757255
SFVRALGFD	9	Unmodified	_SFVRALGFD_					0	0	0			REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	REV__ENST00000459720.5_1_9:90585689-90589466:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.266542	1010.51853	-0.18576	-9.4044E-05	-0.22838	-0.00011562	-0.41414	-0.00020967	506.26628709856686	44.973	0.58707	45.017	44.756	45.344	0.043877	0.04811	-0.00031371	NaN	47.657	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	873390	+		71893	25070	50385	50468							0.01369187271757255
SFVRVIGAPF	10	Unmodified	_SFVRVIGAPF_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.2755737304688	2	546.813659	1091.61277	-1.0353	-0.00056609	2.1619	0.0011822	1.1267	0.00061608	546.8143240508363	79.589	0.46066	79.607	79.475	79.936	0.018677					18	10	2	0	0	0	0.03519	1	9800	9800		24.203	0	1	91080	+		71894	23115	50386	50469	78516	78516					0.0706232609388735
SFVVFLVF	8	Unmodified	_SFVVFLVF_					0	0	0			REV__nc|nan|A6NFR6-3|C5orf60	REV__nc|nan|A6NFR6-3|C5orf60	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2777404785156	2	479.275847	956.537141	0.83865	0.00040194	3.2963	0.0015798	4.1349	0.0019818	479.2772019259283	96.265	2.3127	96.128	95.156	97.468	-0.1367					130	52	5	0	0	0	1.0572	1	11915	11915		28.254	0	1	1775700	+		71895	37257	50387	50470	78517	78517					0.05713348913616301
SFVVFLVF	8	Unmodified	_SFVVFLVF_					0	0	0			REV__nc|nan|A6NFR6-3|C5orf60	REV__nc|nan|A6NFR6-3|C5orf60	MSMS	OPSCC_40_ClassI_Rep-3	6	479.2778625488281	2	479.275847	956.537141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.763	1	85.626	85.126	86.126	-0.13753								0	0	0	0.6544	1	10389	10389		44.531	0.15388	1		+		71896	37257	50387	50470	78518	78518					0.05713348913616301
SFWASEQAL	9	Unmodified	_SFWASEQAL_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7431640625	2	519.748182	1037.48181	-0.59033	-0.00030682	-3.9511	-0.0020536	-4.5415	-0.0023604	519.7460040302165	37.952	0.38623	37.773	37.522	37.908	-0.17929					14	10	2	0	0	0	0.024436	1	3103	3103		23.042	0	1	186110	+		71897	26330	50388	50471	78519	78519					-0.03543109344809636
SFWWWQDNWLW	11	Unmodified	_SFWWWQDNWLW_					0	0	0		ENST00000431490.1_1_3:45201441-45201549:-|nuORF	ENST00000431490.1_1_3:45201441-45201549:-|nuORF	ENST00000431490.1_1_3:45201441-45201549:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.26953125	3	551.913971	1652.72008	0.24654	0.00013607	4.2005	0.0023183	4.4471	0.0024544	552.2502016089603	22.451	0.69194	22.262	22.055	22.746	-0.18894					23	14	2	0	0	0	0.02489	1	847	847		9.2118	7.6888	1	104700			71898	14186	50389	50472	78520	78520					-0.08016748762520365
SFYKVLSD	8	Unmodified	_SFYKVLSD_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.27813720703125	2	479.74765	957.480748	-0.023488	-1.1268E-05	2.8155	0.0013507	2.792	0.0013395	479.7499873784626	84.063	0.52258	84.063	83.692	84.215	0					17	11	2	0	0	0	0.027866	1	10484	10484		35.618	0	1	103130	+		71899	28285	50390	50473	78521	78521					0.0003067628628059538
SFYLGPSV	8	Unmodified	_SFYLGPSV_					0	0	0			REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7801513671875	2	435.223811	868.433069	-0.44053	-0.00019173	-3.659	-0.0015925	-4.0995	-0.0017842	435.2221606032802	37.674	0.52144	37.674	37.414	37.936	0					17	14	2	0	0	0	0.027866	1	3134	3134		29.15	10.825	1	110140	+		71900	35338	50391	50474	78522	78522					-0.006409779139062266
SFYLGPSV	8	Unmodified	_SFYLGPSV_					0	0	0			REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.223811	868.433069	-0.46553	-0.00020261	-3.5211	-0.0015324	-3.9866	-0.0017351	435.2221773025606	37.496	0.38736	37.432	37.268	37.655	-0.063385	-0.17326	1.9214E-05	NaN	29.15	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146100	+		71901	35338	50391	50474							-0.006409779139062266
SFYLGPSV	8	Unmodified	_SFYLGPSV_					0	0	0			REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	REV__ENST00000568303.1_1_15:75182833-75183082:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.223811	868.433069	-0.049923	-2.1728E-05	-3.3171	-0.0014437	-3.3671	-0.0014654	435.22220668660174	37.678	0.37164	37.71	37.45	37.822	0.032269	0.10452	0.00019672	NaN	29.15	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107980	+		71902	35338	50391	50474							-0.006409779139062266
SGAACRLY	8	Unmodified	_SGAACRLY_					0	0	0			REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.70404052734375	2	420.705263	839.395972	-0.90486	-0.00038068	-2.9232	-0.0012298	-3.828	-0.0016105	420.70393022824857	33.664	1.1484	33.498	33.195	34.344	-0.16565					70	28	4	0	0	0	0.91239	1	2387	2387		50.025	0	1	5168400	+		71903	21117	50392	50475	78523	78523					-0.030149727313187213
SGAEDKQAGR	10	Unmodified	_SGAEDKQAGR_					0	0	0		ENST00000527895.1_1_19:42636742-42637128:+|nuORF	ENST00000527895.1_1_19:42636742-42637128:+|nuORF	ENST00000527895.1_1_19:42636742-42637128:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7493896484375	2	509.749244	1017.48394	-1.1776	-0.00060026	1.7183	0.00087591	0.54076	0.00027565	509.7500686546672	29.783	0.73362	29.862	29.607	30.341	0.078344					43	17	4	0	0	0	0.77808	1	1819	1819		62.107	1.1355	1	1701500			71904	16164	50393	50476	78524	78524					-0.02410680606999449
SGALTLDAYKP	11	Unmodified	_SGALTLDAYKP_					0	0	0			REV__ENST00000573487.5_1_16:21191085-21191160:+|nuORF	REV__ENST00000573487.5_1_16:21191085-21191160:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.3200073242188	2	568.303321	1134.59209	0.14867	8.4492E-05	-4.168	-0.0023687	-4.0193	-0.0022842	568.8024449573052	20.327	0.29286	20.103	19.973	20.266	-0.22344					10	5	3	0	0	0	0.02475	1	525	525		51.193	1.6567	1	11012	+		71905	35436	50394	50477	78525	78525					0.030176909235478888
SGDVLLVIDA	10	Unmodified	_SGDVLLVIDA_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.28155517578125	2	501.279315	1000.54408	0.091538	4.5886E-05	0.35162	0.00017626	0.44316	0.00022215	501.2794346348873	76.59	0.91888	76.338	75.944	76.863	-0.25162					51	21	3	0	0	0	0.34101	1	9101	9101		104.75	0	1	2881700	+		71906	21946	50395	50478	78526	78526					0.04382617003523137
SGECRNNLSDC	11	Unmodified	_SGECRNNLSDC_					0	0	0			REV__CON__Q28194	REV__CON__Q28194	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.2330322265625	2	599.234787	1196.45502	0.14515	8.6981E-05	-2.3782	-0.0014251	-2.233	-0.0013381	599.2331369334942	95.676	0.85735	95.553	95.291	96.148	-0.12251					39	19	3	0	0	0	0.64701	1	11820	11820		66.962	17.52	1	301440	+	+	71907	19572	50396	50479	78527	78527					-0.13534909289955976
SGEDEAPPEVS	11	Unmodified	_SGEDEAPPEVS_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.7384643554688	2	558.738208	1115.46186	-0.78762	-0.00044007	1.3641	0.00076218	0.5765	0.00032211	558.7388371422732	61.314	0.73743	61.056	60.809	61.547	-0.25725					42	17	4	0	0	0	0.84811	1	6859	6859		54.776	8.8041	1	1905300	+		71908	28197	50397	50480	78528	78528					-0.09124949866099996
SGERPYKCKL	10	Unmodified	_SGERPYKCKL_					0	0	0		ENSG00000198429|ENST00000429654|ZNF69	ENSG00000198429|ENST00000429654|ZNF69	ENSG00000198429|ENST00000429654|ZNF69	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.8101196289062	2	590.81079	1179.60703	-0.16894	-9.9814E-05	-2.9725	-0.0017562	-3.1415	-0.001856	590.808999546907	59.322	1.7232	59.073	58.576	60.3	-0.24842					96	43	4	0	0	0	0.59716	1	6564	6564		77.318	0	1	9601600			71909	10134	50398	50481	78529	78529					0.024408595199020056
SGFLRNLL	8	Unmodified	_SGFLRNLL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86707325-86709823:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.2685241699219	2	460.271627	918.528701	0.70962	0.00032662	-0.7031	-0.00032362	0.0065234	3.0025E-06	460.27106033417306	67.617	0.50758	67.362	67.153	67.661	-0.25516					28	11	3	0	0	0	0.83003	1	7788	7788		56.721	1.9447	1	550570			71910	3464	50399	50482	78530	78530					0.0661779499697559
SGFLTLHNAF	10	Unmodified	_SGFLTLHNAF_					0	0	0		ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.804443359375	2	553.785099	1105.55564	0.36451	0.00020186	-0.5177	-0.00028669	-0.15319	-8.4832E-05	553.7863957127399	68.45	0.32018	68.207	68.11	68.43	-0.24277					9	7	2	0	0	0	0.03519	1	7903	7903		40.778	14.085	1	67573			71911	5557	50400	50483	78531	78531					0.007088588175065524
SGFLTLHNAF	10	Unmodified	_SGFLTLHNAF_					0	0	0		ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.785099	1105.55564	0.20644	0.00011432	-5.5164	-0.0030549	-5.3099	-0.0029406	553.7820129222354	67.815	0.73377	67.834	67.384	68.118	0.018913	-0.10702	9.5807E-05	NaN	45.972	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415840			71912	5557	50400	50483							0.007088588175065524
SGGFLPEDTH	10	Unmodified	_SGGFLPEDTH_					0	0	0		ENST00000550375.1_1_14:105714044-105714245:-|nuORF	ENST00000550375.1_1_14:105714044-105714245:-|nuORF	ENST00000550375.1_1_14:105714044-105714245:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2412719726562	2	530.240721	1058.46689	-1.6646	-0.00088263	2.0182	0.0010701	0.35357	0.00018748	530.2417220414414	110.58	0.98775	110.44	109.89	110.88	-0.13983					75	39	2	0	0	0	1.1329	1	13533	13533		27.882	2.4321	1	68316			71913	16578	50401	50484	78532	78532					-0.06000601212804213
SGGGGGGK	8	Unmodified	_SGGGGGGK_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	REV__nc|ENSG00000090372|Q9NRL3-3|STRN4;ENSG00000248713|ENST00000511828|C4orf54	REV__nc|ENSG00000090372|Q9NRL3-3|STRN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8424072265625	1	576.273615	575.266338	-0.15821	-9.117E-05	3.1445	0.0018121	2.9863	0.0017209	576.2740149325987	88.782	0.16899	88.644	88.566	88.735	-0.13744					8	3	3	0	0	0	0.027866	1	10822	10822		12.207	3.9756	1	26522			71914	20871;10835	50402	50485	78533	78533					-0.03828406018953956
SGGGLRPGVI	10	Unmodified	_SGGGLRPGVI_					0	0	0		ENST00000237654.8_1_4:77996857-77997100:-|nuORF	ENST00000237654.8_1_4:77996857-77997100:-|nuORF	ENST00000237654.8_1_4:77996857-77997100:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.76666259765625	2	456.766709	911.518865	-0.5836	-0.00026657	0.33214	0.00015171	-0.25146	-0.00011486	456.76676291390135	39.327	1.3195	39.351	38.807	40.126	0.023727					93	36	4	0	0	0	0.80817	1	3314	3314		60.118	2.307	1	2972600			71915	11263	50403	50486	78534	78534					0.05956606991605895
SGGIFPPPP	9	Unmodified	_SGGIFPPPP_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7799987792969	2	434.731803	867.449054	-0.089899	-3.9082E-05	-4.0945	-0.00178	-4.1844	-0.0018191	434.7297770065898	37.76	0.41183	37.581	37.363	37.775	-0.17929					25	10	3	0	0	0	0.024487	1	3084	3084		40.573	24.099	1	284850			71916	1722	50404	50487	78535	78535					0.010027283229874229
SGGIFPPPP	9	Unmodified	_SGGIFPPPP_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.731803	867.449054	-0.62342	-0.00027102	-3.8959	-0.0016937	-4.5194	-0.0019647	434.7299739616327	37.685	0.4517	37.685	37.45	37.902	0	0.041359	3.0198E-05	NaN	31.955	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1225900			71917	1722	50404	50487							0.010027283229874229
SGGIFPPPP	9	Unmodified	_SGGIFPPPP_					0	0	0		nc|ENSG00000082074|O15117|FYB1;ENSG00000082074|ENST00000512982|FYB1;nc|ENSG00000082074|O15117-3|FYB1	nc|ENSG00000082074|O15117|FYB1	nc|ENSG00000082074|O15117|FYB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	434.731803	867.449054	-0.27868	-0.00012115	-4.1435	-0.0018013	-4.4221	-0.0019224	434.72983527469813	37.728	0.50529	37.76	37.487	37.992	0.032269	0.11634	-0.00018501	NaN	31.955	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1127100			71918	1722	50404	50487							0.010027283229874229
SGGLIPASPY	10	Unmodified	_SGGLIPASPY_					0	0	0			REV__nc|ENSG00000196482|P62508-4|ESRRG	REV__nc|ENSG00000196482|P62508-4|ESRRG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2509765625	2	481.2531	960.491647	-0.096509	-4.6445E-05	-2.6107	-0.0012564	-2.7073	-0.0013029	481.2517063374226	19.7	0.61895	19.581	19.397	20.016	-0.11872					18	12	2	0	0	0	1.0271	1	437	437		42.396	5.3677	1	136150	+		71919	28187	50405	50488	78536	78536					0.009820786605587273
SGGPDKPNW	9	Unmodified	_SGGPDKPNW_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7823486328125	2	479.224874	956.435195	-0.40707	-0.00019508	-0.36865	-0.00017666	-0.77571	-0.00037174	479.2245969557711	44.133	0.53455	44.028	43.741	44.275	-0.10468					24	14	2	0	0	0	0.024487	1	4051	4051		31.955	5.1588	1	546170	+		71920	27559	50406	50489	78537	78537					-0.04476549176104072
SGGPDKPNW	9	Unmodified	_SGGPDKPNW_					0	0	0			REV__ENSG00000183273|ENST00000327554|CCDC60	REV__ENSG00000183273|ENST00000327554|CCDC60	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.224874	956.435195	-0.83695	-0.00040109	0.44946	0.00021539	-0.38749	-0.00018569	479.22489659907376	44.273	0.5313	44.054	43.788	44.319	-0.21938	0.022394	0.00035288	NaN	55.504	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586310	+		71921	27559	50406	50489							-0.04476549176104072
SGGSALLSL	9	Unmodified	_SGGSALLSL_					0	0	0		ENST00000488946.1_1_19:49993436-49993604:+|nuORF	ENST00000488946.1_1_19:49993436-49993604:+|nuORF	ENST00000488946.1_1_19:49993436-49993604:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.5364685058594	2	402.726718	803.438883	0.57839	0.00023293	-0.020144	-8.1127E-06	0.55825	0.00022482	402.727413289825	32.449	0.5026	32.212	31.954	32.457	-0.23666					17	11	2	0	0	0	0.024457	1	2263	2263		29.15	0	1	103090			71922	15397	50407	50490	78538	78538					0.02930120597761743
SGGVGGLLAH	10	Unmodified	_SGGVGGLLAH_					0	0	0			REV__DNAH10|p.V2920G|1|0.25|ENSG00000197653|chr12:123893350-123893350|T/G|missense_variant	REV__DNAH10|p.V2920G|1|0.25|ENSG00000197653|chr12:123893350-123893350|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.25640869140625	2	434.237784	866.461016	0.0013677	5.9392E-07	0.68761	0.00029859	0.68898	0.00029918	434.23793251627995	44.252	0.3672	44.289	44.142	44.509	0.0369					14	10	2	0	0	0	0.03519	1	4140	4140		37.159	0	1	179850	+		71923	19684	50408	50491	78539	78539					0.02244345066196729
SGIVTRGEEL	10	Unmodified	_SGIVTRGEEL_					0	0	0			REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	REV__nc|ENSG00000019144|Q86UU1-2|PHLDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.78564453125	2	530.785296	1059.55604	-0.96463	-0.00051201	0.41735	0.00022152	-0.54728	-0.00029049	530.7855112515458	52.969	0.52323	52.969	52.673	53.196	0					25	13	2	0	0	0	0.52765	1	5715	5715		85.161	0	1	5512200	+		71924	19984	50409	50492	78540	78540					0.028642337467317702
SGKPGECCDLY	11	Unmodified	_SGKPGECCDLY_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MSMS	OPSCC_40_ClassI_Rep-2	5	586.240966796875	2	586.241549	1170.46855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.499	1	61.321	60.821	61.821	-0.17781								0	0	0	0.90099	1	6887	6887		52.937	0	1				71925	6160	50410	50493	78541	78541					-0.10987051510710444
SGKWALVSPF	10	Unmodified	_SGKWALVSPF_					0	0	0		ENSG00000136014|ENST00000258499|USP44;nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	ENSG00000136014|ENST00000258499|USP44	ENSG00000136014|ENST00000258499|USP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2755737304688	2	546.297842	1090.58113	-0.60135	-0.00032852	-4.1547	-0.0022697	-4.756	-0.0025982	546.2959777209509	73.445	0.35374	73.18	72.977	73.331	-0.26479					13	8	2	0	0	0	0.03519	1	8634	8634		62.107	28.592	1	118920			71926	4970	50411	50494	78542	78542					0.039463333399453404
SGLKRGSW	8	Unmodified	_SGLKRGSW_					0	0	0			REV__ENSG00000132423|ENST00000254759|COQ3	REV__ENSG00000132423|ENST00000254759|COQ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.74554443359375	2	445.745776	889.477	2.1314	0.00095007	-2.8663	-0.0012776	-0.73484	-0.00032755	445.7445362620839	24.705	1.4587	24.524	24.198	25.656	-0.18089					75	33	4	0	0	0	0.50239	3	1083	1071;1083;1095		85.359	11.385	1	11669000	+		71927	23275	50412	50495	78543;78544;78545	78544					0.02784051303092383
SGLLSTGRSI	10	Unmodified	_SGLLSTGRSI_					0	0	0			REV__ENST00000418309.1_1_7:156398070-156398407:-|nuORF	REV__ENST00000418309.1_1_7:156398070-156398407:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.805908203125	2	495.782556	989.550559	-0.038172	-1.8925E-05	-3.6001	-0.0017849	-3.6383	-0.0018038	495.78055073112705	90.516	1.4869	90.499	89.583	91.07	-0.016708					77	35	3	0	0	0	0.03519	1	11333	11333		35.152	10.633	1	684780	+		71928	32116	50413	50496	78546	78546					0.055365549549037496
SGLLTYTG	8	Unmodified	_SGLLTYTG_					0	0	0		ENSG00000159348|ENST00000367249|CYB5R1	ENSG00000159348|ENST00000367249|CYB5R1	ENSG00000159348|ENST00000367249|CYB5R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.248779296875	2	406.213443	810.412334	0.96528	0.00039211	-4.206	-0.0017085	-3.2408	-0.0013164	406.2118870331548	87.787	0.42867	87.751	87.532	87.961	-0.035362					25	10	3	0	0	0	0.027866	1	11049	11049		33.516	1.5607	1	316440			71929	6740	50414	50497	78547	78547					-0.0004556829356943126
SGLPVESGLPS	11	Unmodified	_SGLPVESGLPS_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.77294921875	2	521.774396	1041.53424	-0.095038	-4.9589E-05	0.46298	0.00024157	0.36795	0.00019198	521.7742983045657	71.946	0.65049	71.946	71.642	72.292	0					33	16	3	0	0	0	0.024768	1	8793	8793		39.253	11.371	1	430450			71930	6621	50415	50498	78548	78548					0.015134289981688198
SGLRAKRL	8	Unmodified	_SGLRAKRL_					0	0	0			REV__ENST00000572067.1_1_16:67916382-67916877:+|nuORF	REV__ENST00000572067.1_1_16:67916382-67916877:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7901306152344	2	450.790518	899.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.099	1	19.899	19.399	20.399	-0.2001								0	0	0	0.42824	1	497	497		63.306	2.3343	1		+		71931	35418	50416	50499	78549	78549					0.11268305982457605
SGNCPFHVR	9	Unmodified	_SGNCPFHVR_					0	0	0			REV__ENSG00000185156|ENST00000329805|MFSD6L	REV__ENSG00000185156|ENST00000329805|MFSD6L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3034362792969	2	508.740168	1015.46578	-0.79454	-0.00040421	4.4791	0.0022787	3.6845	0.0018745	508.74230555932786	25.575	1.8529	25.541	25.037	26.889	-0.034395					87	44	3	0	0	0	0.024319	1	1297	1297		47.657	0	1	659160	+		71932	27739	50417	50500	78550	78550					-0.04133094062706277
SGNLRKVIQI	10	Unmodified	_SGNLRKVIQI_					0	0	0		AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	AGTPBP1|p.Q869Ifs*30|1|0.09|ENSG00000135049|chr9:85589645-85589646|-/TATTTTATAATGGAAATGATAAT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.3504638671875	2	564.348397	1126.68224	-0.42136	-0.0002378	4.2722	0.002411	3.8508	0.0021732	564.3507712672946	81.148	0.8254	81.005	80.616	81.441	-0.14249					51	19	4	0	0	0	1.0002	1	9736	9736		45.972	1.8554	1	649270			71933	46	50418	50501	78551	78551					0.12396785042665215
SGNRIVMGK	9	Unmodified	_SGNRIVMGK_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.77850341796875	2	481.266019	960.517485	-0.47775	-0.00022993	-4.2785	-0.0020591	-4.7563	-0.002289	481.2641596497597	56.508	0.57711	56.606	56.209	56.786	0.097897					22	15	2	0	0	0	0.024466	1	6199	6199		18.262	0	1	191710			71934	4339	50419	50502	78552	78552					0.035646496311983356
SGPIASLPVL	10	Unmodified	_SGPIASLPVL_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2876281738281	2	477.286943	952.559333	0.2724	0.00013001	-0.14923	-7.1226E-05	0.12317	5.8787E-05	477.28670487578586	54.408	0.96783	54.408	53.976	54.944	0					69	27	3	0	0	0	0.60198	1	5933	5933		76.774	12.567	1	4424800	+		71935	27649	50420	50503	78553	78553					0.08115528591372367
SGPIGPGG	8	Unmodified	_SGPIGPGG_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	641.3843994140625	1	641.325316	640.31804	-1.1797	-0.00075655	-1.9642	-0.0012597	-3.1438	-0.0020162	641.324327193362	101.17	0.41174	101.03	100.86	101.27	-0.13156					13	8	2	0	0	0	0.027866	1	12570	12570		13.775	0	1	35776			71936	10315	50421	50504	78554	78554					-0.016506623250393204
SGPIMLDEVQ	10	Unmodified	_SGPIMLDEVQ_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;LGALS3BP-KRT14|1|fusion	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.839599609375	2	544.768257	1087.52196	-0.62205	-0.00033888	-2.3362	-0.0012727	-2.9583	-0.0016116	544.7669924643056	73.301	0.48049	73.03	72.76	73.241	-0.27126					24	11	3	0	0	0	0.03519	1	8883	8883		90.37	0	1	144590			71937	2924	50422	50505	78555	78555					-0.01829930736539609
SGPIMLDEVQ	10	Unmodified	_SGPIMLDEVQ_					0	0	0		ENSG00000108679|ENST00000262776|LGALS3BP;LGALS3BP-KRT14|1|fusion	ENSG00000108679|ENST00000262776|LGALS3BP	ENSG00000108679|ENST00000262776|LGALS3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8392944335938	2	544.768257	1087.52196	-0.70065	-0.00038169	-2.1446	-0.0011683	-2.8453	-0.00155	544.7669659828766	73.022	0.44042	73.032	72.777	73.217	0.0096512					18	10	2	0	0	0	0.03519	1	8805	8805		110.12	38.242	1	142010			71938	2924	50422	50505	78556	78556					-0.01829930736539609
SGPKSKPL	8	Unmodified	_SGPKSKPL_					0	0	0			REV__ENSG00000042429|ENST00000251871|MED17	REV__ENSG00000042429|ENST00000251871|MED17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.8876953125	2	407.245078	812.475603	-1.1176	-0.00045513	1.6068	0.00065435	0.48918	0.00019922	407.2454310593153	33.456	0.55474	33.29	33.077	33.632	-0.16565					20	13	3	0	0	0	0.027866	1	2412	2412		19.104	7.5925	1	92961	+		71939	20099	50423	50506	78557	78557					0.06186417214314588
SGPLPRVEN	9	Unmodified	_SGPLPRVEN_					0	0	0			REV__ENST00000590034.2_1_19:2243417-2244653:+|nuORF	REV__ENST00000590034.2_1_19:2243417-2244653:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.2174987792969	2	484.761623	967.508694	-0.17407	-8.4384E-05	-3.6682	-0.0017782	-3.8423	-0.0018626	484.75970567131	55.282	0.72507	55.051	54.785	55.51	-0.23087					42	20	3	0	0	0	0.023274	1	5977	5977		58.23	0.41864	1	1909900	+		71940	35689	50424	50507	78558	78558					0.02363999266378869
SGPLPRVEN	9	Unmodified	_SGPLPRVEN_					0	0	0			REV__ENST00000590034.2_1_19:2243417-2244653:+|nuORF	REV__ENST00000590034.2_1_19:2243417-2244653:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.761623	967.508694	-0.60262	-0.00029212	-2.9976	-0.0014531	-3.6002	-0.0017452	484.7599851532928	55.187	0.74616	55.041	54.8	55.546	-0.14609	-0.013936	0.00052337	NaN	58.23	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1449000	+		71941	35689	50424	50507							0.02363999266378869
SGPLPRVEN	9	Unmodified	_SGPLPRVEN_					0	0	0			REV__ENST00000590034.2_1_19:2243417-2244653:+|nuORF	REV__ENST00000590034.2_1_19:2243417-2244653:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.761623	967.508694	0.087352	4.2345E-05	-3.8665	-0.0018743	-3.7791	-0.001832	484.7595861519016	55.278	0.81522	55.072	54.831	55.646	-0.20613	0.01725	-0.00031904	NaN	58.23	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1558400	+		71942	35689	50424	50507							0.02363999266378869
SGPLRPASSLL	11	Unmodified	_SGPLRPASSLL_					0	0	0			REV__ENST00000546689.1_1_12:104851076-104851193:+|nuORF	REV__ENST00000546689.1_1_12:104851076-104851193:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3186645507812	2	549.319306	1096.62406	0.75373	0.00041404	-3.311	-0.0018188	-2.5573	-0.0014048	549.3174448773781	99.74	0.56215	99.616	99.234	99.796	-0.12458					46	14	4	0	0	0	1.0017	1	12369	12369		36.447	4.9169	1	437000	+		71943	34849	50425	50508	78559	78559					0.0796110339738334
SGPPLPQLPQL	11	Unmodified	_SGPPLPQLPQL_					0	0	0			REV__ENST00000480167.5_1_19:9730200-9731851:-|nuORF	REV__ENST00000480167.5_1_19:9730200-9731851:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.8305053710938	2	573.829506	1145.64446	-0.40906	-0.00023473	1.3149	0.00075453	0.90584	0.0005198	573.8302072691919	73.677	1.2303	73.677	73.362	74.593	0					49	29	2	0	0	0	0.28368	1	9012	9012		90.601	7.8504	1	2930200	+		71944	32180	50426	50509	78560	78560					0.07746274057171831
SGPPLPQLPQL	11	Unmodified	_SGPPLPQLPQL_					0	0	0			REV__ENST00000480167.5_1_19:9730200-9731851:-|nuORF	REV__ENST00000480167.5_1_19:9730200-9731851:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	573.8285522460938	2	573.829506	1145.64446	0.036871	2.1158E-05	0.79384	0.00045553	0.83071	0.00047669	573.8299262502593	74.009	1.2227	73.738	73.384	74.606	-0.27126					52	29	2	0	0	0	0.28368	1	9012	9012		90.601	7.8504	1	2786600	+		71945	32180	50426	50509	78561	78561					0.07746274057171831
SGPPLPQLPQL	11	Unmodified	_SGPPLPQLPQL_					0	0	0			REV__ENST00000480167.5_1_19:9730200-9731851:-|nuORF	REV__ENST00000480167.5_1_19:9730200-9731851:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.831298828125	2	573.829506	1145.64446	-0.90257	-0.00051792	1.7521	0.0010054	0.84951	0.00048747	573.830417599519	73.677	1.2797	73.687	73.327	74.607	0.0096512					60	30	3	0	0	0	0.28368	2	8931	8921;8931		90.601	17.722	1	2681900	+		71946	32180	50426	50509	78562;78563	78563					0.07746274057171831
SGPQQEGSQ	9	Unmodified	_SGPQQEGSQ_					0	0	0		ENST00000547388.1_1_12:53895138-53896850:+|nuORF	ENST00000547388.1_1_12:53895138-53896850:+|nuORF	ENST00000547388.1_1_12:53895138-53896850:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.22503662109375	2	459.201596	916.388638	-0.30013	-0.00013782	-4.393	-0.0020173	-4.6931	-0.0021551	459.200190865338	26.18	0.49111	26.012	25.809	26.301	-0.16816					25	14	2	0	0	0	0.023635	1	1348	1348		39.253	17.293	1	228720			71947	16531	50427	50510	78564	78564					-0.07290033798039985
SGPRPPLK	8	Unmodified	_SGPRPPLK_					0	0	0			REV__GDF5|p.G103S|1|0.41|ENSG00000125965|chr20:35437622-35437622|C/T|missense_variant	REV__GDF5|p.G103S|1|0.41|ENSG00000125965|chr20:35437622-35437622|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.7749938964844	2	426.25852	850.502486	0.28126	0.00011989	-1.2654	-0.00053939	-0.98416	-0.00041951	426.25843498735907	41.718	0.87456	41.741	41.147	42.021	0.023006					55	24	3	0	0	0	0.027866	1	3766	3766		17.365	0	1	649420	+		71948	36067	50428	50511	78565	78565					0.07125525825517798
SGPTTDLIYNE	11	Unmodified	_SGPTTDLIYNE_					0	0	0			REV__ENSG00000182271|ENST00000328886|TMIGD1	REV__ENSG00000182271|ENST00000328886|TMIGD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2184143066406	3	403.859309	1208.5561	1.053	0.00042526	2.4286	0.00098082	3.4816	0.0014061	403.86136111186755	57.414	0.33043	57.212	57.064	57.395	-0.20208					12	8	2	0	0	0	0.024741	1	6262	6262		4.6433	0	1	50249	+		71949	27465	50429	50512	78566	78566					-0.039838110439632146
SGRGGSFRR	9	Unmodified	_SGRGGSFRR_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2584228515625	2	490.262656	978.51076	0.36039	0.00017669	-2.1904	-0.0010739	-1.83	-0.00089719	490.26312431363135	97.662	3.6759	97.671	96.149	99.825	0.0089111					122	84	3	0	0	0	0.82115	1	12439	12439		37.812	9.9293	1	205420			71950	6529	50430	50513	78567	78567					0.020644727948479158
SGRGGSFRR	9	Unmodified	_SGRGGSFRR_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.262656	978.51076	0.52978	0.00025973	-4.0302	-0.0019759	-3.5004	-0.0017161	490.2620633643889	97.785	1.447	97.782	97.322	98.769	-0.0020752	0.055866	-0.0010878	NaN	37.812	56	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157570			71951	6529	50430	50513							0.020644727948479158
SGRGNPIKVSR	11	Unmodified	_SGRGNPIKVSR_					0	0	0		F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant;F13A1|p.R547Vfs*30|1|0.23|ENSG00000124491|chr6:6174688-6174688|G/-|frameshift_variant;ENSG00000124491|ENST00000264870|F13A1	F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant	F13A1|p.Q401Rfs*64|1|0.41|ENSG00000124491|chr6:6197238-6197238|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.8412475585938	2	585.838728	1169.6629	-0.51056	-0.00029911	3.5875	0.0021017	3.0769	0.0018026	585.8407349209743	53.312	0.72184	53.054	52.723	53.444	-0.25839					57	18	4	0	0	0	0.79085	1	5560	5560		58.246	3.5239	1	3793600			71952	4052	50431	50514	78568	78568					0.08485828751759072
SGRLAQKLCSA	11	Unmodified	_SGRLAQKLCSA_					0	0	0			REV__ENST00000371711.4_1_20:48251667-48252051:-|nuORF	REV__ENST00000371711.4_1_20:48251667-48252051:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.32958984375	2	567.308415	1132.60228	0.21601	0.00012254	1.6246	0.00092164	1.8406	0.0010442	567.3091120508129	91.434	0.69015	91.295	91.147	91.837	-0.13942					25	15	3	0	0	0	0.024765	1	11220	11220		41.427	11.109	1	109600	+		71953	31174	50432	50515	78569	78569					0.04127975377150506
SGRLWSKAI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGRLWSKAI_					1	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2919311523438	2	530.300916	1058.58728	-0.44863	-0.00023791	-0.55522	-0.00029443	-1.0038	-0.00053234	530.3006468174243	54.548	0.79578	54.303	54.01	54.806	-0.2453					58	22	3	0	0	0	0.28047	1	5820	5820		78.264	12.798	1	5875400			71954	9175	50433	50516	78570	78570					0.06032851571490028
SGRLWSKAI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGRLWSKAI_					1	0	0		ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF;ENST00000329092.12_1_3:197677808-197679492:+|nuORF	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.296142578125	2	530.300916	1058.58728	0.60327	0.00031991	-2.3984	-0.0012719	-1.7951	-0.00095195	530.3001084844536	54.477	0.73829	54.271	53.947	54.685	-0.20613					67	19	6	0	0	0	0.15388	1	5796	5796		98.582	24.417	1	4923800			71955	9175	50433	50516	78571	78571					0.06032851571490028
SGRYYLKN	8	Unmodified	_SGRYYLKN_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7638244628906	2	500.764166	999.513779	0.41319	0.00020691	-2.0515	-0.0010273	-1.6384	-0.00082043	500.7631175787896	99.66	0.72955	99.655	99.21	99.939	-0.0050888					37	16	3	0	0	0	0.74904	1	12649	12649		63.306	5.495	1	604480			71956	2994	50434	50517	78572	78572					0.01400303128991709
SGSHKKAI	8	Unmodified	_SGSHKKAI_					0	0	0			REV__ENSG00000264006|ENST00000648824|AKR1C8	REV__ENSG00000264006|ENST00000648824|AKR1C8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.240478515625	2	414.240327	826.466101	-0.16364	-6.7786E-05	-0.00092704	-3.8402E-07	-0.16457	-6.817E-05	414.2402786010584	30.171	0.90763	30.18	29.757	30.665	0.0086708					71	21	4	0	0	0	0.97924	1	1923	1923		40.573	3.4135	1	4418800	+		71957	29131	50435	50518	78573	78573					0.045926489288035555
SGSLLKVF	8	Unmodified	_SGSLLKVF_					0	0	0		nc|ENSG00000179846|Q17RQ9|NKPD1;ENSG00000179846|ENST00000686631|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	nc|ENSG00000179846|Q17RQ9|NKPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.775390625	2	425.755278	849.496004	0.11862	5.0501E-05	-0.45577	-0.00019405	-0.33715	-0.00014354	425.7553286719956	42.238	0.39007	42.007	41.865	42.255	-0.23029					21	10	3	0	0	0	0.027866	1	3777	3777		47.916	0	1	143160			71958	8929	50436	50519	78574	78574					0.06523587874141867
SGSLVATLQSL	11	Unmodified	_SGSLVATLQSL_					0	0	0		nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-4|IFI27	nc|ENSG00000165949|P40305-4|IFI27	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.304443359375	2	538.303321	1074.59209	-0.68413	-0.00036827	3.3821	0.0018206	2.698	0.0014523	538.3049864237151	85.804	2.112	85.746	85.355	87.467	-0.05761					114	49	4	0	0	0	0.036205	3	10756	10756;10770;10789		125.71	19.298	1	6686500			71959	7489	50437	50520	78575;78576;78577	78575					0.05777690923582668
SGSLVATLQSL	11	Unmodified	_SGSLVATLQSL_					0	0	0		nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-4|IFI27	nc|ENSG00000165949|P40305-4|IFI27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3046875	2	538.303321	1074.59209	-1.4916	-0.00080292	4.1814	0.0022509	2.6898	0.0014479	538.305403072209	85.767	2.467	85.791	85.408	87.875	0.023666					131	58	4	0	0	0	0.0098899	2	10710	10710;10723		140.11	33.697	1	6568400			71960	7489	50437	50520	78578;78579	78578					0.05777690923582668
SGSPSLTAR	9	Unmodified	_SGSPSLTAR_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10;ENST00000377604.7_1_X:47004707-47006821:+|nuORF	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2237243652344	2	438.232699	874.450845	-0.35167	-0.00015411	0.49668	0.00021766	0.14501	6.3548E-05	438.2327012283276	26.037	0.72009	26.013	25.443	26.164	-0.023088					18	16	2	0	0	0	0.024477	1	1256	1256		27.882	3.6795	1	53874			71961	18573	50438	50521	78580	78580					0.008597373409315878
SGSQLFDHVA	10	Unmodified	_SGSQLFDHVA_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.7590942382812	2	530.756538	1059.49852	0.26412	0.00014018	3.6117	0.001917	3.8759	0.0020571	530.7582937272027	96.697	1.061	96.703	96.397	97.458	0.0065079					59	23	4	0	0	0	0.74632	1	12306	12306		64.207	2.516	1	538290			71962	6538	50439	50522	78581	78581					-0.028846084588622034
SGSYIYSKGGN	11	Unmodified	_SGSYIYSKGGN_					0	0	0			REV__ENST00000506246.5_1_4:10086058-10094494:-|nuORF	REV__ENST00000506246.5_1_4:10086058-10094494:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.7684936523438	2	566.767103	1131.51965	-1.1354	-0.00064353	4.3701	0.0024768	3.2346	0.0018333	566.7695463254024	83.954	0.85425	83.875	83.608	84.462	-0.078674					33	19	2	0	0	0	0.55321	1	10475	10475		72.879	1.0018	1	1019800	+		71963	20445	50440	50523	78582	78582					-0.04084643149985823
SGTGKGISGYL	11	Unmodified	_SGTGKGISGYL_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2767944335938	2	520.274564	1038.53457	4.9938	0.0025981	-0.58899	-0.00030644	4.4048	0.0022917	520.2741630842042	17.196	1.6143	17.256	17.081	18.695	0.06036					83	42	4	0	0	0	0.9728	1	116	116		42.864	5.7052	1	1037400			71964	2471	50441	50524	78583	78583					0.016848487179913718
SGTKELLV	8	Unmodified	_SGTKELLV_					0	0	0			REV__nc|ENSG00000103343|Q15697-2|ZNF174	REV__nc|ENSG00000103343|Q15697-2|ZNF174	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.25830078125	2	423.750193	845.485833	0.14405	6.1039E-05	0.37118	0.00015729	0.51523	0.00021833	423.7502219503547	27.523	0.53997	27.366	27.145	27.685	-0.15664					24	12	3	0	0	0	0.027866	1	1486	1486		71.296	35.677	1	273720	+		71965	21378	50442	50525	78584	78584					0.05690980148915514
SGTKGRGAKL	10	Unmodified	_SGTKGRGAKL_					0	0	0			REV__ENST00000263856.8_1_2:86769427-86790508:-|nuORF	REV__ENST00000263856.8_1_2:86769427-86790508:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.791015625	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	1.1266	1	10490	10490		29.17	0.91578	1	2003200	+		71966	29699	50443	50526	78585	78585					0.0790368091164737
SGTKKKISLN	10	Unmodified	_SGTKKKISLN_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-4|BANK1	REV__nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3272705078125	2	538.327131	1074.63971	-0.74783	-0.00040258	0.59758	0.00032169	-0.15025	-8.0886E-05	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.0719	1	12480	12480		36.447	0.82846	1	21993000	+		71967	24882	50444	50527	78586	78586					0.10537389914429696
SGTPLCIIIN	10	Unmodified	_SGTPLCIIIN_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.281005859375	2	515.78371	1029.55287	-0.91358	-0.00047121	2.6046	0.0013434	1.691	0.00087219	515.7845037748405	83.446	0.64048	83.446	83.095	83.735	0					33	14	4	0	0	0	0.03519	1	10438	10438		93.195	9.9083	1	1018300	+		71968	22185	50445	50528	78587	78587					0.039272673683626635
SGTRHPDV	8	Unmodified	_SGTRHPDV_					0	0	0		ENST00000473757.5_1_7:99933761-99935821:+|nuORF	ENST00000473757.5_1_7:99933761-99935821:+|nuORF	ENST00000473757.5_1_7:99933761-99935821:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.77996826171875	2	434.717216	867.419879	-0.63532	-0.00027619	0.75292	0.00032731	0.1176	5.1123E-05	434.7176050160831	38.408	0.33191	38.186	38.085	38.417	-0.22148					14	8	2	0	0	0	0.027866	1	3201	3201		37.159	20.686	1	68074			71969	15016	50446	50529	78588	78588					-0.01913415973285737
SGTTPRFFQY	10	Unmodified	_SGTTPRFFQY_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.8658752441406	3	401.864617	1202.57202	0.50165	0.0002016	3.0121	0.0012105	3.5138	0.0014121	401.86574836123003	43.251	0.72412	43.139	42.775	43.499	-0.11253					75	19	5	0	0	0	1.0275	1	3966	3966		42.338	10.304	1	5507000			71970	1823	50447	50530	78589	78589					-0.021160600163966592
SGTTPRFFQY	10	Unmodified	_SGTTPRFFQY_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.8661193847656	3	401.864617	1202.57202	-0.1026	-4.1229E-05	2.7802	0.0011173	2.6776	0.001076	401.8656134399337	44.01	1.8439	43.906	43.507	45.351	-0.10468					130	49	4	0	0	0	1.1314	1	4080	4080		27.047	0.29761	1	3265700			71971	1823	50447	50530	78590	78590					-0.021160600163966592
SGTTPRFFQY	10	Unmodified	_SGTTPRFFQY_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.86578369140625	3	401.864617	1202.57202	0.48426	0.00019461	2.9424	0.0011825	3.4267	0.0013771	401.86569934878145	43.469	0.80042	43.232	42.8	43.6	-0.23736					79	21	5	0	0	0	1.0545	2	3982	3982;3996		38.754	10.171	1	5163100			71972	1823	50447	50530	78591;78592	78591					-0.021160600163966592
SGTTPRFFQY	10	Unmodified	_SGTTPRFFQY_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.8655700683594	3	401.864617	1202.57202	-1.1643	-0.00046788	4.3398	0.001744	3.1755	0.0012761	401.86622458396147	43.484	0.79074	43.258	42.951	43.742	-0.22597					71	21	5	0	0	0	1.0177	2	3970	3970;3983		43.651	9.5643	1	5209300			71973	1823	50447	50530	78593;78594	78593					-0.021160600163966592
SGTTPRFFQY	10	Unmodified	_SGTTPRFFQY_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.8650817871094	3	401.864617	1202.57202	-1.2846	-0.00051624	4.1418	0.0016644	2.8572	0.0011482	401.86613451506935	44.188	1.8436	43.969	43.597	45.441	-0.21939					136	50	4	0	0	0	1.1228	1	4086	4086		22.58	1.5474	1	2540300			71974	1823	50447	50530	78595	78595					-0.021160600163966592
SGVKLHMHFDQ	11	Unmodified	_SGVKLHMHFDQ_					0	0	0			REV__nc|ENSG00000134146|Q7L8W6-2|DPH6	REV__nc|ENSG00000134146|Q7L8W6-2|DPH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.7766418457031	3	433.548523	1297.62374	-0.4575	-0.00019835	-0.54613	-0.00023677	-1.0036	-0.00043512	433.5481597366029	29.896	1.413	29.652	28.666	30.079	-0.24415					49	32	3	0	0	0	0.02476	1	1812	1812		38.714	0	1	71010	+		71975	36676	50448	50531	78596	78596					-0.013166395941425435
SGVPLRGAT	9	Unmodified	_SGVPLRGAT_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.P4603Lfs*82|1|0.17|ENSG00000215182|chr11:1191950-1191950|C/-|frameshift_variant	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.22967529296875	2	429.245609	856.476666	0.068519	2.9412E-05	0.46124	0.00019798	0.52976	0.0002274	429.2457031769098	27.901	0.44028	27.749	27.482	27.922	-0.15195					20	10	3	0	0	0	0.024427	1	1542	1542		19.997	0	1	224780			71976	10583	50449	50532	78597	78597					0.04268631583215665
SGVSCLHIGP	10	Unmodified	_SGVSCLHIGP_					0	0	0			REV__nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	REV__nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.7876281738281	2	485.244752	968.474951	-0.044295	-2.1494E-05	-0.51071	-0.00024782	-0.555	-0.00026931	485.24486101375567	42.943	0.53357	42.831	42.538	43.071	-0.11253					23	13	3	0	0	0	0.03519	1	3890	3890		35.618	0	1	178380	+		71977	21576	50450	50533	78598	78598					-0.01054745497026488
SGVSFLHPLF	10	Unmodified	_SGVSFLHPLF_					0	0	0			REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF	REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8367919921875	2	552.297842	1102.58113	-0.63607	-0.0003513	0.47282	0.00026114	-0.16325	-9.0163E-05	552.298538225723	83.181	1.8506	83.181	82.449	84.3	0					53	42	3	0	0	0	0.03519	1	10458	10458		44.117	24.757	1	151710	+		71978	31051	50451	50534	78599	78599					0.033943333399292897
SGVSFLHPLF	10	Unmodified	_SGVSFLHPLF_					0	0	0			REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF	REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.297842	1102.58113	0.45703	0.00025241	-0.28275	-0.00015616	0.17428	9.6255E-05	552.2978980708949	83.174	0.51252	83.084	82.872	83.385	-0.090454	-0.048674	-0.00049153	NaN	53.351	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138000	+		71979	31051	50451	50534							0.033943333399292897
SGVTKGGVT	9	Unmodified	_SGVTKGGVT_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5538635253906	2	403.224342	804.434132	-0.37823	-0.00015251	-0.39038	-0.00015741	-0.7686	-0.00030992	403.22464495099666	29.934	0.76324	29.784	29.377	30.14	-0.14952					30	17	3	0	0	0	0.024495	1	1801	1801		19.997	0	1	53552	+		71980	36798;24957	50452	50535	78600	78600					0.024092364550028833
SGVVSFPISAK	11	Unmodified	_SGVVSFPISAK_					0	0	0			REV__ENST00000481500.1_1_2:242277175-242285749:+|nuORF	REV__ENST00000481500.1_1_2:242277175-242285749:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.2766723632812	2	546.308406	1090.60226	-1.165	-0.00063642	3.513	0.0019192	2.348	0.0012827	546.3103722271679	30.291	0.6575	30.3	29.839	30.496	0.0086708					24	15	2	0	0	0	0.024723	1	1937	1937		17.468	0	1	130800	+		71981	26252	50453	50536	78601	78601					0.06058298648804339
SHAFATILV	9	Unmodified	_SHAFATILV_					0	0	0			REV__nc|ENSG00000184716|A6NH21|SERINC4	REV__nc|ENSG00000184716|A6NH21|SERINC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7711486816406	2	479.77146	957.528367	-0.30218	-0.00014498	0.098582	4.7297E-05	-0.2036	-9.7682E-05	479.77146013576436	74.783	1.3393	74.794	74.095	75.435	0.010376					91	32	5	0	0	0	0.75397	1	9061	9061		42.396	1.618	1	7925300	+		71982	37013	50454	50537	78602	78602					0.04790375277138992
SHAGFLGPAAL	11	Unmodified	_SHAGFLGPAAL_					0	0	0		ENST00000565652.1_1_15:75660495-75660924:-|nuORF	ENST00000565652.1_1_15:75660495-75660924:-|nuORF	ENST00000565652.1_1_15:75660495-75660924:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2615356445312	2	520.779816	1039.54508	-0.46731	-0.00024337	-3.9409	-0.0020523	-4.4082	-0.0022957	520.777908478472	22.701	0.60595	22.625	22.223	22.829	-0.075296					18	12	2	0	0	0	0.024759	1	817	817		26.693	1.1189	1	54339			71983	16925	50455	50538	78603	78603					0.02688876163074383
SHAGVWPLT	9	Unmodified	_SHAGVWPLT_					0	0	0		ENST00000301327.4_1_8:145734459-145734825:+|nuORF	ENST00000301327.4_1_8:145734459-145734825:+|nuORF	ENST00000301327.4_1_8:145734459-145734825:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.277587890625	2	484.253434	966.492316	-0.038409	-1.86E-05	1.5147	0.0007335	1.4763	0.0007149	484.2540343713065	97.876	1.195	97.876	97.325	98.52	0					43	27	3	0	0	0	0.024523	1	12449	12449		5.9211	0	1	47805			71984	11925	50456	50539	78604	78604					0.007729181002559926
SHAISEHV	8	Unmodified	_SHAISEHV_					0	0	0		nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1	nc|ENSG00000021826|P31327-2|CPS1	nc|ENSG00000021826|P31327-2|CPS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.2198486328125	2	440.219591	878.42463	-0.26969	-0.00011872	0.63303	0.00027867	0.36334	0.00015995	440.2197337612727	26.284	1.322	26.261	25.909	27.231	-0.023088					96	32	4	0	0	0	0.88442	1	1329	1329		52.299	0.96372	1	2884000			71985	962	50457	50540	78605	78605					-0.019445318305315595
SHALLHMRLRL	11	Unmodified	_SHALLHMRLRL_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.2615966796875	3	449.599441	1345.77649	0.36668	0.00016486	4.1653	0.0018727	4.532	0.0020376	449.6014393557921	41.031	0.35418	41.031	40.835	41.189	0					10	9	2	0	0	0	0.024792	1	3685	3685		24.232	0	1	106020	+		71986	34774	50458	50541	78606	78606					0.11743600593126757
SHALLHMRLRL	11	Unmodified	_SHALLHMRLRL_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	449.599441	1345.77649	0.55466	0.00024937	3.2178	0.0014467	3.7724	0.0016961	449.6009060479778	41.205	0.17767	41.082	40.943	41.12	-0.12317	0.025501	-0.00075051	NaN	24.232	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90568	+		71987	34774	50458	50541							0.11743600593126757
SHAPAHEHAE	10	Unmodified	_SHAPAHEHAE_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3195190429688	2	543.241587	1084.46862	0.62333	0.00033862	-0.53937	-0.00029301	0.083956	4.5608E-05	543.2411602011101	59.754	0.66037	59.754	59.52	60.181	0					38	17	3	0	0	0	0.03519	1	6824	6824		21.96	12.254	1	673820	+		71988	24972	50459	50542	78607	78607					-0.07023547404196506
SHAPSHCTRAP	11	Unmodified	_SHAPSHCTRAP_					0	0	0			REV__nc|ENSG00000169231|P49746-2|THBS3	REV__nc|ENSG00000169231|P49746-2|THBS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	581.8219604492188	2	582.272364	1162.53017	-0.93594	-0.00054497	4.4752	0.0026058	3.5393	0.0020608	582.7744468815798	64.445	0.62996	64.445	64.133	64.763	0					25	16	2	0	0	0	0.024747	1	7621	7621		24.519	0	1	127950	+		71989	26339	50460	50543	78608	78608					-0.044589389765633314
SHATHPKRSI	10	Unmodified	_SHATHPKRSI_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.329833984375	2	567.312346	1132.61014	-0.52601	-0.00029841	-1.5402	-0.00087375	-2.0662	-0.0011722	567.3120706245516	90.835	0.41772	90.847	90.449	90.867	0.011276					13	9	2	0	0	0	0.03519	1	11416	11416		21.686	0	1	117230	+		71990	24345	50461	50544	78609	78609					0.049138706889380046
SHATHPKRSI	10	Unmodified	_SHATHPKRSI_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.312346	1132.61014	0.25333	0.00014372	-4.4432	-0.0025207	-4.1898	-0.0023769	567.3111358077248	90.585	0.25549	90.447	90.237	90.493	-0.13824					10	5	3	0	0	0	0.03519	1	11065	11065		17.468	0	1	73010	+		71991	24345	50461	50544	78610	78610					0.049138706889380046
SHCGLQPVII	10	Unmodified	_SHCGLQPVII_					0	0	0			REV__ENSG00000115998|ENST00000264434|C2orf42	REV__ENSG00000115998|ENST00000264434|C2orf42	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7888793945312	2	533.789327	1065.5641	-0.63534	-0.00033914	-2.9136	-0.0015552	-3.5489	-0.0018944	533.7876528963106	78.006	0.65116	78.006	77.712	78.363	0					38	15	4	0	0	0	0.64538	1	9660	9660		71.877	9.7701	1	1848700	+		71992	22248	50462	50545	78611	78611					0.03394089462494776
SHCLFLLLL	9	Unmodified	_SHCLFLLLL_					0	0	0			REV__ENST00000254508.6_1_3:13358231-13358375:-|nuORF	REV__ENST00000254508.6_1_3:13358231-13358375:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2420654296875	2	529.806988	1057.59942	-0.14741	-7.81E-05	-4.4228	-0.0023432	-4.5702	-0.0024213	529.8045090968119	43.765	0.50745	43.796	43.522	44.029	0.030823					35	13	4	0	0	0	0.024466	1	4096	4096		25.45	3.7478	1	1252300	+		71993	29528	50463	50546	78612	78612					0.07292751990303259
SHCPRKELA	9	Unmodified	_SHCPRKELA_					0	0	0		ENST00000337248.8_1_1:24706183-24710435:-|nuORF;ENST00000497384.1_1_1:24710390-24710465:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.8107299804688	2	520.768926	1039.5233	-0.55357	-0.00028828	1.9029	0.00099098	1.3494	0.0007027	520.7693552168032	92.94	0.5534	92.935	92.479	93.032	-0.0041962					18	11	2	0	0	0	0.024457	1	11706	11706		29.15	0	1	107900			71994	12417	50464	50547	78613	78613					0.005117481428669635
SHCPRKELA	9	Unmodified	_SHCPRKELA_					0	0	0		ENST00000337248.8_1_1:24706183-24710435:-|nuORF;ENST00000497384.1_1_1:24710390-24710465:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.768926	1039.5233	-0.29292	-0.00015254	0.29732	0.00015483	0.0043989	2.2908E-06	520.7687714981238	92.873	0.42543	92.881	92.672	93.097	0.0077286	0.017077	-0.0004376	NaN	42.396	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114450			71995	12417	50464	50547							0.005117481428669635
SHCPRKELA	9	Unmodified	_SHCPRKELA_					0	0	0		ENST00000337248.8_1_1:24706183-24710435:-|nuORF;ENST00000497384.1_1_1:24710390-24710465:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	ENST00000337248.8_1_1:24706183-24710435:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.768926	1039.5233	0.23138	0.00012049	0.028129	1.4649E-05	0.25951	0.00013514	520.7677600994817	92.898	0.29465	92.775	92.545	92.84	-0.12242	-0.088675	-0.00071797	NaN	42.396	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28497			71996	12417	50464	50547							0.005117481428669635
SHDERMSIL	9	Unmodified	_SHDERMSIL_					0	0	0			REV__ENSG00000121957|ENST00000264126|GPSM2	REV__ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.788818359375	2	544.263673	1086.51279	-1.2191	-0.00066352	1.5022	0.00081758	0.28307	0.00015406	544.2649572995088	84.674	0.54001	84.601	84.507	85.047	-0.072769					16	12	2	0	0	0	0.024323	1	10633	10633		27.882	0	1	57894	+		71997	22621	50465	50548	78614	78614					-0.027002793022120386
SHDRWTFVG	9	Unmodified	_SHDRWTFVG_					0	0	0		ENST00000489421.1_1_1:41507155-41512268:-|nuORF	ENST00000489421.1_1_1:41507155-41512268:-|nuORF	ENST00000489421.1_1_1:41507155-41512268:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8111572265625	2	552.764697	1103.51484	-1.1717	-0.00064765	0.68111	0.00037649	-0.49054	-0.00027116	552.7651540244796	51.507	0.48091	51.594	51.445	51.926	0.087006					23	13	2	0	0	0	0.024436	1	5394	5394		38.806	8.3025	1	149460			71998	15409	50466	50549	78615	78615					-0.03277482502107887
SHDSNFTV	8	Unmodified	_SHDSNFTV_					0	0	0			REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.7264709472656	2	453.701232	905.38791	-0.0032042	-1.4537E-06	-3.2292	-0.0014651	-3.2324	-0.0014665	453.6997557537256	23.5	0.66334	23.5	23.245	23.908	0					33	15	4	0	0	0	0.027866	1	969	969		23.042	0	1	406250	+		71999	19632	50467	50550	78616	78616					-0.06856828447087082
SHEDYIRW	8	Unmodified	_SHEDYIRW_					0	0	0		ENST00000453612.1_1_7:43810757-43831091:+|nuORF	ENST00000453612.1_1_7:43810757-43831091:+|nuORF	ENST00000453612.1_1_7:43810757-43831091:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3271484375	2	553.256705	1104.49886	-0.079062	-4.3741E-05	2.9437	0.0016286	2.8646	0.0015849	553.2582077453673	54.267	0.49632	54.022	53.804	54.301	-0.2453					23	15	2	0	0	0	0.027866	1	5778	5778		26.796	5.1104	1	959110			72000	14551	50468	50551	78617	78617					-0.049211887390356424
SHEHIQNCRKW	11	Unmodified	_SHEHIQNCRKW_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29766845703125	3	479.898327	1436.67315	2.3855	0.0011448	-0.17533	-8.4139E-05	2.2101	0.0010606	480.2326284829369	19.022	0.39492	18.788	18.632	19.027	-0.23345					11	7	2	0	0	0	0.024723	1	375	375		35.178	11.8	1	21406			72001	895	50469	50552	78618	78618					-0.027719315853346416
SHEHLLQRVDN	11	Unmodified	_SHEHLLQRVDN_					0	0	0		ENSG00000019169|ENST00000327097|MARCO;nc|ENSG00000019169|Q9UEW3-2|MARCO	ENSG00000019169|ENST00000327097|MARCO	ENSG00000019169|ENST00000327097|MARCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7432556152344	3	449.89698	1346.66911	-0.18128	-8.1556E-05	-1.7729	-0.00079763	-1.9542	-0.00087919	449.8950680237714	27.365	0.14691	27.365	27.251	27.398	0					5	3	2	0	0	0	0.024816	1	1490	1490		4.8861	0	1	44338			72002	946	50470	50553	78619	78619					0.00964302192642208
SHEIQSDVL	9	Unmodified	_SHEIQSDVL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.30322265625	2	514.256371	1026.49819	0.76754	0.00039471	-0.76982	-0.00039588	-0.0022796	-1.1723E-06	514.2558799712793	36.976	0.74955	36.767	36.364	37.114	-0.2092					34	18	3	0	0	0	0.024405	1	2965	2965		35.618	12.576	1	417010			72003	2451	50471	50554	78620	78620					-0.014000281787048152
SHEIQSDVL	9	Unmodified	_SHEIQSDVL_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.256371	1026.49819	-0.58084	-0.0002987	0.24031	0.00012358	-0.34053	-0.00017512	514.2563874691431	37.006	0.58705	36.787	36.488	37.076	-0.2195	-0.013336	0.00067276	NaN	44.117	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480390			72004	2451	50471	50554							-0.014000281787048152
SHEKLHIVN	9	Unmodified	_SHEKLHIVN_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.8343505859375	2	538.795998	1075.57744	0.36948	0.00019907	1.6761	0.00090307	2.0456	0.0011021	538.7968443067207	20.754	0.34555	20.558	20.286	20.632	-0.19577					10	6	2	0	0	0	0.024541	1	564	564		23.042	4.7181	1	14428			72005	8804	50472	50555	78621	78621					0.04267663566088231
SHEKLHIVN	9	Unmodified	_SHEKLHIVN_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.795998	1075.57744	-0.82914	-0.00044674	3.625	0.0019531	2.7959	0.0015064	538.797994159022	20.45	0.49142	20.226	19.973	20.464	-0.22344	-0.1659	0.0010219	NaN	23.042	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18408			72006	8804	50472	50555							0.04267663566088231
SHESDFALS	9	Unmodified	_SHESDFALS_					0	0	0			REV__ENSG00000165671|ENST00000439151|NSD1;REV__NSD1|p.K754Nfs*14|1|0.37|ENSG00000165671|chr5:177210658-177210658|A/-|frameshift_variant	REV__ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7182312011719	2	496.719621	991.42469	-0.47489	-0.00023589	-3.396	-0.0016869	-3.8709	-0.0019227	496.71803404020903	28.102	1.3901	28.097	27.616	29.006	-0.0042019					91	33	5	0	0	0	0.62163	1	1579	1579		51.335	5.3835	1	4828600	+		72007	25914;37297	50473	50556	78622	78622					-0.07136576621178392
SHFGAKSVPV	10	Unmodified	_SHFGAKSVPV_					0	0	0			REV__nc|ENSG00000170469|Q86W54-2|SPATA24	REV__nc|ENSG00000170469|Q86W54-2|SPATA24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.7899780273438	2	514.779816	1027.54508	-0.70157	-0.00036115	-0.17373	-8.9435E-05	-0.8753	-0.00045059	514.7792400538024	43.631	0.39193	43.394	43.247	43.639	-0.23736					14	10	2	0	0	0	0.03519	1	3984	3984		25.574	12.615	1	175790	+		72008	36921	50474	50557	78623	78623					0.03240876163090434
SHFGAKSVPV	10	Unmodified	_SHFGAKSVPV_					0	0	0			REV__nc|ENSG00000170469|Q86W54-2|SPATA24	REV__nc|ENSG00000170469|Q86W54-2|SPATA24	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.779816	1027.54508	-0.36409	-0.00018743	-0.95313	-0.00049065	-1.3172	-0.00067808	514.7788922424801	43.395	0.35414	43.283	43.182	43.536	-0.11253	-0.095849	-0.0005471	NaN	25.574	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238300	+		72009	36921	50474	50557							0.03240876163090434
SHFGAKSVPV	10	Unmodified	_SHFGAKSVPV_					0	0	0			REV__nc|ENSG00000170469|Q86W54-2|SPATA24	REV__nc|ENSG00000170469|Q86W54-2|SPATA24	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.779816	1027.54508	-0.87517	-0.00045052	0.016723	8.6086E-06	-0.85845	-0.00044191	514.779324355518	43.678	0.27975	43.459	43.282	43.562	-0.21938	0.080341	0.00045142	NaN	25.574	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172090	+		72010	36921	50474	50557							0.03240876163090434
SHFIIITED	9	Unmodified	_SHFIIITED_					0	0	0			REV__nc|ENSG00000064655|O00167-2|EYA2;REV__nc|ENSG00000158161|Q99504-4|EYA3	REV__nc|ENSG00000064655|O00167-2|EYA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.78662109375	2	537.776939	1073.53933	-1.5146	-0.00081451	1.8287	0.00098343	0.31411	0.00016892	537.7777174900008	80.127	1.4395	79.976	79.715	81.155	-0.15169					47	34	2	0	0	0	0.024457	1	9894	9894		37.159	0	1	449110	+		72011	20290;25179	50475	50558	78624	78624					0.005497328607589225
SHFKIVSPF	9	Unmodified	_SHFKIVSPF_					0	0	0		nc|ENSG00000118997|Q8WXX0-4|DNAH7	nc|ENSG00000118997|Q8WXX0-4|DNAH7	nc|ENSG00000118997|Q8WXX0-4|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2659912109375	2	531.292559	1060.57057	-1.0637	-0.00056516	0.43375	0.00023045	-0.62999	-0.00033471	531.2927329880392	33.647	1.823	33.482	32.839	34.662	-0.16565					59	45	2	0	0	0	0.024523	1	2423	2423		21.96	14.27	1	293000			72012	18209	50476	50559	78625	78625					0.042703506855104933
SHFLHYVL	8	Unmodified	_SHFLHYVL_					0	0	0		ENST00000260264.8_1_11:120189625-120190027:+|nuORF	ENST00000260264.8_1_11:120189625-120190027:+|nuORF	ENST00000260264.8_1_11:120189625-120190027:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29248046875	2	508.271627	1014.5287	-0.16551	-8.4122E-05	3.686	0.0018735	3.5205	0.0017894	508.2726192389408	50.74	0.1291	50.591	50.528	50.657	-0.14916					6	3	2	0	0	0	0.027866	1	5317	5317		35.201	3.2459	1	260490			72013	11444	50477	50560	78626	78626					0.022017949970063455
SHFQQQLL	8	Unmodified	_SHFQQQLL_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;ASXL1|p.E566Sfs*137|1|0.2|ENSG00000171456|chr20:32433893-32433893|G/-|frameshift_variant;ASXL1|p.C594Afs*109|1|0.12|ENSG00000171456|chr20:32434491-32434491|A/-|frameshift_variant;ASXL1|p.N1158Tfs*13|1|0.24|ENSG00000171456|chr20:32436180-32436180|A/-|frameshift_variant;nc|ENSG00000171456|Q8IXJ9-2|ASXL1;ASXL1|p.R545Vfs*158|1|0.32|ENSG00000171456|chr20:32433831-32433831|C/-|frameshift_variant;ASXL1|p.K539Sfs*164|1|0.35|ENSG00000171456|chr20:32433813-32433813|A/-|frameshift_variant	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.82476806640625	2	500.764166	999.513779	-0.21527	-0.0001078	-0.23255	-0.00011645	-0.44782	-0.00022425	500.7637745003819	22.372	0.2863	22.17	21.999	22.285	-0.20199					7	5	2	0	0	0	0.027866	1	743	743		44.117	3.5442	1	15242			72014	8152	50478	50561	78627	78627					0.014003031290144463
SHGGRKVPL	9	Unmodified	_SHGGRKVPL_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.3221740722656	2	475.780151	949.545748	-0.63526	-0.00030224	3.4874	0.0016592	2.8521	0.001357	475.7816744721355	66.107	0.75507	65.894	65.588	66.343	-0.21327					38	18	3	0	0	0	0.024466	1	7638	7638		31.53	0	1	424570			72015	1973	50479	50562	78628	78628					0.06895715602797736
SHGLIPFSST	10	Unmodified	_SHGLIPFSST_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3238525390625	2	523.269281	1044.52401	0.14208	7.4348E-05	1.0354	0.00054177	1.1774	0.00061612	523.2693156291533	50.198	0.52581	49.918	49.657	50.183	-0.27977					19	13	2	0	0	0	0.03519	1	5092	5092		35.618	12.576	1	864290	+		72016	28790	50480	50563	78629	78629					0.0035286606357658457
SHGLLPKCIMQ	11	Unmodified	_SHGLLPKCIMQ_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;ENST00000482556.5_1_20:47242425-47249020:-|nuORF;nc|ENSG00000124126|Q8TCU6-2|PREX1	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.53973388671875	3	409.550988	1225.63113	1.3793	0.00056488	-3.892	-0.001594	-2.5127	-0.0010291	409.5493611626714	19.962	0.52971	19.762	19.554	20.084	-0.2001					12	10	2	0	0	0	0.024723	1	479	479		28.577	0	1	11724			72017	4011	50481	50564	78630	78630					0.02734376681928552
SHGLLPKCIMQ	11	Unmodified	_SHGLLPKCIMQ_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;ENST00000482556.5_1_20:47242425-47249020:-|nuORF;nc|ENSG00000124126|Q8TCU6-2|PREX1	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	409.550988	1225.63113	0.32959	0.00013498	-3.2717	-0.0013399	-2.9421	-0.0012049	409.5496071231437	19.881	0.34409	19.72	19.43	19.774	-0.1608	-0.035977	0.00024639	NaN	28.577	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13106			72018	4011	50481	50564							0.02734376681928552
SHHDSNLKCLG	11	Unmodified	_SHHDSNLKCLG_					0	0	0		ENST00000294728.6_1_1:101185378-101185438:+|nuORF	ENST00000294728.6_1_1:101185378-101185438:+|nuORF	ENST00000294728.6_1_1:101185378-101185438:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	3	404.192628	1209.55605	0.60381	0.00024406	-3.7191	-0.0015032	-3.1153	-0.0012592	404.19060220678523	25.755	0.66234	25.584	25.205	25.867	-0.17078					43	16	4	0	0	0	0.024735	1	1291	1291		21.78	0	1	214140			72019	11820	50482	50565	78631	78631					-0.040340895249300956
SHHIQWRLDMV	11	Unmodified	_SHHIQWRLDMV_					0	0	0			REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	REV__MTCL1|p.L1267Pfs*5|1|0.05|ENSG00000168502|chr18:8813214-8813215|-/CC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.24078369140625	3	474.575072	1420.70339	0.26258	0.00012461	1.5632	0.00074187	1.8258	0.00086648	474.57576918464474	37.136	0.42009	37.168	36.957	37.377	0.032269					19	10	2	0	0	0	0.02484	1	2972	2972		22.562	3.2989	1	297490	+		72020	26267	50483	50566	78632	78632					0.009864270798288999
SHHPTLKNV	9	Unmodified	_SHHPTLKNV_					0	0	0		chr8:25460554-25462054|482|16.31|0.99|4.04|+|0|CDCA2,CDCA2|1	chr8:25460554-25462054|482|16.31|0.99|4.04|+|0|CDCA2,CDCA2|1	chr8:25460554-25462054|482|16.31|0.99|4.04|+|0|CDCA2,CDCA2|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2740478515625	2	516.78289	1031.55123	-0.74944	-0.0003873	2.8208	0.0014577	2.0713	0.0010704	516.7845762671799	26.022	0.3842	26.022	25.779	26.163	0					14	8	2	0	0	0	0.024397	1	1257	1257		39.253	0	1	53712			72021	435	50484	50567	78633	78633					0.03671394394609706
SHHRKALQI	9	Unmodified	_SHHRKALQI_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.32080078125	2	545.317432	1088.62031	-0.4112	-0.00022424	2.5641	0.0013983	2.1529	0.001174	545.3187111203188	72.666	0.80505	72.676	72.45	73.255	0.0097656					44	19	3	0	0	0	0.043667	1	8777	8777		131.03	8.8554	1	1790800	+		72022	20192	50485	50568	78634	78634					0.07954478414194455
SHHWWPSTGL	10	Unmodified	_SHHWWPSTGL_					0	0	0			REV__ENST00000405592.5_1_2:42981509-42981665:+|nuORF	REV__ENST00000405592.5_1_2:42981509-42981665:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.19281005859375	3	403.192957	1206.55704	0.17629	7.108E-05	-0.61342	-0.00024732	-0.43712	-0.00017624	403.19241735805883	30.491	1.3195	30.247	29.862	31.182	-0.24415					66	31	3	0	0	0	1.0004	1	1952	1952		41.427	0	1	1713000	+		72023	31913	50486	50569	78635	78635					-0.03797507093713648
SHICRDPCLEA	11	Unmodified	_SHICRDPCLEA_					0	0	0			REV__nc|ENSG00000173039|Q04206-2|RELA	REV__nc|ENSG00000173039|Q04206-2|RELA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2137145996094	3	415.190119	1242.54853	-0.3866	-0.00016051	2.6904	0.001117	2.3038	0.00095651	415.1914469343443	29.037	0.37137	29.037	28.778	29.149	0					18	8	3	0	0	0	0.02477	1	1753	1753		8.4073	4.5638	1	68583	+		72024	26732	50487	50570	78636	78636					-0.0630456511689772
SHIDQREKI	9	Unmodified	_SHIDQREKI_					0	0	0		ENST00000510852.1_1_4:120188537-120193190:+|nuORF;ENSG00000145390|ENST00000692078|USP53	ENST00000510852.1_1_4:120188537-120193190:+|nuORF	ENST00000510852.1_1_4:120188537-120193190:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.3189086914062	2	563.304187	1124.59382	-0.047376	-2.6687E-05	2.9264	0.0016485	2.879	0.0016218	563.3064882920079	95.37	0.90389	95.374	94.782	95.686	0.0033798					30	20	2	0	0	0	0.020937	1	12150	12150		110.12	27.815	1	169400			72025	5813	50488	50571	78637	78637					0.03650744732203748
SHIDQREKI	9	Unmodified	_SHIDQREKI_					0	0	0		ENST00000510852.1_1_4:120188537-120193190:+|nuORF;ENSG00000145390|ENST00000692078|USP53	ENST00000510852.1_1_4:120188537-120193190:+|nuORF	ENST00000510852.1_1_4:120188537-120193190:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.3193969726562	2	563.304187	1124.59382	-0.079093	-4.4553E-05	3.5689	0.0020104	3.4898	0.0019658	563.3066506812694	95.458	0.99256	95.462	94.835	95.827	0.0041199					34	22	2	0	0	0	0.020937	1	12119	12119		110.12	45.913	1	177360			72026	5813	50488	50571	78638	78638					0.03650744732203748
SHIGAILAF	9	Unmodified	_SHIGAILAF_					0	0	0		ENSG00000181963|ENST00000325719|OR52K2	ENSG00000181963|ENST00000325719|OR52K2	ENSG00000181963|ENST00000325719|OR52K2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.76422119140625	2	464.766178	927.517802	-0.16525	-7.68E-05	-3.8934	-0.0018095	-4.0586	-0.0018863	464.76406313068026	21.831	0.81397	21.64	21.275	22.089	-0.19072					31	16	4	0	0	0	0.88411	1	720	720		33.516	3.0119	1	392630			72027	9086	50489	50572	78639	78639					0.051143926227155134
SHIGLQDP	8	Unmodified	_SHIGLQDP_					0	0	0			REV__ENSG00000123165|ENST00000371124|ACTRT1	REV__ENSG00000123165|ENST00000371124|ACTRT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.7449951171875	2	433.721967	865.429381	-0.63712	-0.00027633	0.94326	0.00040911	0.30614	0.00013278	433.7222376626424	27.92	0.80962	27.752	27.528	28.338	-0.16816					38	19	3	0	0	0	0.027866	1	1583	1583		12.207	0	1	597470	+		72028	22682	50490	50573	78640	78640					-0.00871647687768018
SHIPSVVVL	9	Unmodified	_SHIPSVVVL_					0	0	0		nc|ENSG00000092421|Q9H2E6-2|SEMA6A;ENSG00000092421|ENST00000343348|SEMA6A	nc|ENSG00000092421|Q9H2E6-2|SEMA6A	nc|ENSG00000092421|Q9H2E6-2|SEMA6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.7870788574219	2	475.78711	949.559667	0.58463	0.00027816	-0.66578	-0.00031677	-0.081147	-3.8609E-05	475.78675770961814	85.794	1.9967	85.599	84.467	86.464	-0.19508					98	46	4	0	0	0	0.70186	2	10406	10382;10406		45.952	5.3793	1	5254000			72029	1990	50491	50574	78641;78642	78642					0.08286948311229025
SHIRPGPPIT	10	Unmodified	_SHIRPGPPIT_					0	0	0		ENSG00000185448|ENST00000346193|FAM47A;FAM47A|p.R255C|1|0.29|ENSG00000185448|chrX:34131516-34131516|G/A|missense_variant	ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.2868041992188	2	537.806365	1073.59818	-0.52154	-0.00028049	3.5426	0.0019052	3.021	0.0016247	538.3098045530456	91.823	0.30634	91.682	91.485	91.792	-0.14131					10	6	2	0	0	0	0.03519	1	11230	11230		24.519	8.8774	1	41153			72030	9438	50492	50575	78643	78643					0.0643225394574074
SHIVSTENSRH	11	Unmodified	_SHIVSTENSRH_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.2560119628906	3	422.877697	1265.61126	0.48213	0.00020388	-0.61907	-0.00026179	-0.13694	-5.7907E-05	422.8774917793082	21.523	0.62419	21.346	21.016	21.64	-0.17721					24	12	3	0	0	0	0.024774	1	707	707		21.032	7.5243	1	42819	+		72031	28410	50493	50576	78644	78644					-0.010919597328211239
SHKDPLQLL	9	Unmodified	_SHKDPLQLL_					0	0	0			REV__ENST00000493216.1_1_22:20939554-20940988:+|nuORF	REV__ENST00000493216.1_1_22:20939554-20940988:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.802490234375	2	525.800749	1049.58694	-0.50504	-0.00026555	1.0061	0.00052899	0.50102	0.00026343	525.8011203843344	57.71	0.54851	57.805	57.608	58.156	0.09531					26	14	3	0	0	0	0.89441	1	6432	6432		32.812	2.4947	1	1366900	+		72032	21021	50494	50577	78645	78645					0.06413431851638052
SHKEKKVQ	8	Unmodified	_SHKEKKVQ_					0	0	0			REV__ENSG00000089902|ENST00000262241|RCOR1	REV__ENSG00000089902|ENST00000262241|RCOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.3036193847656	2	492.285266	982.555979	-0.44875	-0.00022091	-1.6404	-0.00080755	-2.0892	-0.0010285	492.28513120116685	31.511	0.19972	31.58	31.486	31.686	0.06896					6	4	2	0	0	0	0.027866	1	2070	2070		16.473	0	1	31108	+		72033	20865	50495	50578	78646	78646					0.06400278537375925
SHKIRAGG	8	Unmodified	_SHKIRAGG_					0	0	0		ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000171873|ENST00000379453|ADRA1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	413.2376708984375	2	413.238119	824.461684	-0.035551	-1.4691E-05	0.35429	0.00014641	0.31874	0.00013172	413.2381660612718	76.315	4.9174	76.047	73.925	78.842	-0.26806					200	118	3	0	0	0	0.99042	1	9112	9112		38.806	3.1879	1	1178700			72034	8214	50496	50579	78647	78647					0.04243184505901354
SHKKGAKL	8	Unmodified	_SHKKGAKL_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7592468261719	2	434.771794	867.529036	0.64865	0.00028202	4.2082	0.0018296	4.8569	0.0021116	434.77267209927294	86.854	0.42101	86.854	86.605	87.026	0					12	9	2	0	0	0	0.027866	1	10904	10904		18.324	4.5491	1	34842			72035	10317	50497	50580	78648	78648					0.08997214716850976
SHKKREAKRR	10	Unmodified	_SHKKREAKRR_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	648.3934326171875	2	648.391993	1294.76943	-0.12697	-8.2326E-05	2.204	0.001429	2.077	0.0013467	648.3939088012331	105.59	1.1539	105.42	105.27	106.42	-0.16216					77	47	4	0	0	0	1.118	1	13148	13148		30.318	6.795	1	1122300	+		72036	20416	50498	50581	78649	78649					0.13384004036925035
SHKLDAMSR	9	Unmodified	_SHKLDAMSR_					0	0	0			REV__nc|ENSG00000170537|Q7Z402-2|TMC7	REV__nc|ENSG00000170537|Q7Z402-2|TMC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.30322265625	2	522.766383	1043.51821	-0.68293	-0.00035701	-3.6114	-0.0018879	-4.2943	-0.0022449	522.7639640840525	29.889	0.29391	29.645	29.568	29.862	-0.24415					11	6	2	0	0	0	0.024541	1	1886	1886		11.511	0	1	85702	+		72037	26484	50499	50582	78650	78650					-0.0018055571974855411
SHKLLRKIF	9	Unmodified	_SHKLLRKIF_					0	0	0		nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;nc|ENSG00000132600|Q9NVM4-4|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	nc|ENSG00000132600|Q9NVM4-3|PRMT7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.3104248046875	2	571.36385	1140.71315	0.26734	0.00015275	1.8323	0.0010469	2.0996	0.0011996	571.362863050317	74.836	0.19961	74.56	74.479	74.678	-0.27573					7	4	2	0	0	0	0.024447	1	8827	8827		32.812	3.2617	1	43195			72038	4625	50500	50583	78651	78651					0.14841983147539395
SHKLSCLITNT	11	Unmodified	_SHKLSCLITNT_					0	0	0			REV__ENST00000371627.4_1_10:93623048-93623204:+|nuORF	REV__ENST00000371627.4_1_10:93623048-93623204:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2185974121094	3	406.216662	1215.62816	0.48053	0.0001952	2.8962	0.0011765	3.3768	0.0013717	406.21772505359985	46.107	0.66222	46.01	45.741	46.403	-0.096649					54	17	5	0	0	0	1.0022	1	4430	4430		32.616	0	1	2443400	+		72039	31171	50501	50584	78652	78652					0.02896824828781064
SHKLYFSL	8	Unmodified	_SHKLYFSL_					0	0	0		ENST00000398505.7_1_21:43413954-43414101:-|nuORF	ENST00000398505.7_1_21:43413954-43414101:-|nuORF	ENST00000398505.7_1_21:43413954-43414101:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2558288574219	2	497.77146	993.528367	0.13545	6.7422E-05	-4.4511	-0.0022157	-4.3157	-0.0021482	497.76985866874315	43.599	0.3611	43.63	43.486	43.847	0.030823					16	9	2	0	0	0	0.027866	1	4042	4042		39.253	0	1	235820			72040	13625	50502	50585	78653	78653					0.03134375277147683
SHKPSGLVV	9	Unmodified	_SHKPSGLVV_					0	0	0		ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENST00000519737.1_1_8:29885475-29885718:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2691955566406	2	462.269084	922.523616	-0.59127	-0.00027332	0.56316	0.00026033	-0.028103	-1.2991E-05	462.26922220859456	45.777	1.4558	45.625	45.244	46.7	-0.15157					91	41	4	0	0	0	0.31037	2	4443	4443;4480		74.255	6.7614	1	11311000			72041	15961	50503	50586	78654;78655	78654					0.0592549113438281
SHKPSGLVV	9	Unmodified	_SHKPSGLVV_					0	0	0		ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENST00000519737.1_1_8:29885475-29885718:+|nuORF	ENST00000519737.1_1_8:29885475-29885718:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.26947021484375	2	462.269084	922.523616	0.35503	0.00016412	-0.31448	-0.00014538	0.040544	1.8742E-05	462.26882101083237	45.6	1.2925	45.644	45.279	46.572	0.04388					98	37	4	0	0	0	0.18915	3	4391	4370;4391;4403		90.777	8.5361	1	10810000			72042	15961	50503	50586	78656;78657;78658	78657					0.0592549113438281
SHKRYLRRLK	10	Unmodified	_SHKRYLRRLK_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.9482421875	3	452.94935	1355.82622	0.24421	0.00011061	-2.1674	-0.00098171	-1.9232	-0.0008711	452.94824343813883	106.29	0.5282	106.16	105.9	106.43	-0.1238					65	22	4	0	0	0	1.1244	1	13242	13242		23.378	0.79825	1	927680	+		72043	36611	50504	50587	78659	78659					0.16254051593455188
SHKTENTY	8	Unmodified	_SHKTENTY_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.2625732421875	2	490.227613	978.440674	0.027489	1.3476E-05	3.1148	0.001527	3.1423	0.0015405	490.231185525393	102.92	0.37003	102.79	102.63	103	-0.12783					15	8	3	0	0	0	0.027866	1	12789	12789		26.693	6.6961	1	194780			72044	3841	50505	50588	78660	78660					-0.049408703842800605
SHKTENTY	8	Unmodified	_SHKTENTY_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	490.227613	978.440674	-0.38925	-0.00019082	9.9144	0.0048603	9.5252	0.0046695	490.2320742149429	102.82	0.30636	102.82	102.65	102.96	0	0.015136	0.0026476	NaN	34.173	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90763			72045	3841	50505	50588							-0.049408703842800605
SHKWKKKPSI	10	Unmodified	_SHKWKKKPSI_					0	0	0		ENST00000294889.5_1_1:220871865-220872123:+|nuORF	ENST00000294889.5_1_1:220871865-220872123:+|nuORF	ENST00000294889.5_1_1:220871865-220872123:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8689575195312	2	619.87204	1237.72953	-0.48862	-0.00030288	-3.8536	-0.0023888	-4.3423	-0.0026916	619.8694795106298	92.383	2.3242	92.392	91.112	93.437	0.009407					190	55	4	0	0	0	1.0992	1	11708	11708		32.812	2.4947	1	1566400			72046	11821	50506	50589	78661	78661					0.12017064313681658
SHLANEMMMY	10	Unmodified	_SHLANEMMMY_					0	0	0		ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-6|PDE2A;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A;nc|ENSG00000186642|O00408-5|PDE2A	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	ENST00000539367.5_1_11:72287653-72353469:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	613.2908935546875	2	613.753769	1225.49299	-1.0509	-0.00064497	-3.5536	-0.0021811	-4.6045	-0.002826	613.7505765283254	60.991	0.31163	60.737	60.66	60.971	-0.25373					9	7	2	0	0	0	0.03519	1	6803	6803		62.107	10.915	1	79299			72047	16402	50507	50590	78662	78662					-0.11074114628831921
SHLDTLLERE	10	Unmodified	_SHLDTLLERE_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	3	404.878815	1211.61462	-0.99626	-0.00040336	-1.7184	-0.00069572	-2.7146	-0.0010991	405.2123081706416	26.433	0.67	26.269	26.038	26.708	-0.16331					28	17	2	0	0	0	0.03519	1	1401	1401		23.378	0	1	113560			72048	2631	50508	50591	78663	78663					0.017272903212187884
SHLEELNSHF	10	Unmodified	_SHLEELNSHF_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	3	404.859643	1211.5571	-0.67288	-0.00027242	3.6871	0.0014928	3.0142	0.0012203	404.8609953683032	26.955	0.51768	26.798	26.586	27.104	-0.15664					18	11	2	0	0	0	0.03519	1	1401	1401		45.022	35.839	1	83191	+		72049	23178	50509	50592	78664	78664					-0.04021551884375185
SHLFSISTLW	10	Unmodified	_SHLFSISTLW_					0	0	0		ENST00000361112.6_1_17:33849919-33864693:-|nuORF	ENST00000361112.6_1_17:33849919-33864693:-|nuORF	ENST00000361112.6_1_17:33849919-33864693:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.7958984375	2	595.813856	1189.61316	-0.70523	-0.00042018	0.13782	8.2115E-05	-0.56741	-0.00033807	595.813801952586	60.936	0.26841	60.73	60.581	60.849	-0.20599					9	6	2	0	0	0	0.03519	1	6817	6817		37.159	15.199	1	90511			72050	12785	50510	50593	78665	78665					0.025937010230791202
SHLLGWMQN	9	Unmodified	_SHLLGWMQN_					0	0	0			REV__ENST00000274811.8_1_5:175964259-175964340:-|nuORF	REV__ENST00000274811.8_1_5:175964259-175964340:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.311279296875	2	543.263476	1084.5124	-0.20293	-0.00011025	-4.4495	-0.0024172	-4.6524	-0.0025275	543.2618148818868	70.821	0.57149	70.55	70.399	70.97	-0.27185					25	14	2	0	0	0	0.024506	1	8282	8282		30.504	0	1	685230	+		72051	29840	50511	50594	78666	78666					-0.026476542313957907
SHLLLVGDP	9	Unmodified	_SHLLLVGDP_					0	0	0		ENSG00000111877|ENST00000619706|MCM9;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9	ENSG00000111877|ENST00000619706|MCM9	ENSG00000111877|ENST00000619706|MCM9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7583312988281	2	475.768917	949.523281	-0.66769	-0.00031767	1.123	0.00053427	0.45527	0.0002166	475.7690987036187	37.055	0.86168	36.835	36.567	37.429	-0.2195					38	21	3	0	0	0	0.024487	1	2975	2975		17.365	0	1	617140			72052	3153	50512	50595	78667	78667					0.04650071414528156
SHLLSIKQK	9	Unmodified	_SHLLSIKQK_					0	0	0			REV__ENSG00000119523|ENST00000476832|ALG2	REV__ENSG00000119523|ENST00000476832|ALG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2490844726562	2	527.324391	1052.63423	-0.27434	-0.00014467	-0.47812	-0.00025213	-0.75246	-0.00039679	527.3242311437355	32.258	0.74344	32.101	31.861	32.605	-0.15772					26	17	2	0	0	0	0.024506	1	2236	2236		16.473	4.2663	1	831730	+		72053	22462	50513	50596	78668	78668					0.11001711122617053
SHLPLPYY	8	Unmodified	_SHLPLPYY_					0	0	0		nc|ENSG00000106038|P49640-2|EVX1;ENSG00000106038|ENST00000496902|EVX1	nc|ENSG00000106038|P49640-2|EVX1	nc|ENSG00000106038|P49640-2|EVX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.2760925292969	2	495.258185	988.501818	-0.18128	-8.9778E-05	-2.8247	-0.001399	-3.006	-0.0014887	495.2587444944375	31.973	0.12826	31.737	31.654	31.782	-0.23666					4	2	2	0	0	0	0.027866	1	2162	2162		28.254	0	1	17853			72054	2753	50514	50597	78669	78669					0.007106863857984536
SHLPVIHEL	9	Unmodified	_SHLPVIHEL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2794799804688	2	522.795466	1043.57638	-0.11854	-6.197E-05	-2.3665	-0.0012372	-2.4851	-0.0012992	522.7938969827374	59.821	0.36794	59.621	59.427	59.795	-0.20016					19	9	3	0	0	0	0.024381	1	6821	6821		37.159	14.117	1	189040			72055	7422	50515	50598	78670	78670					0.05633449197171103
SHLRISSK	8	Unmodified	_SHLRISSK_					0	0	0		ENSG00000163006|ENST00000295124|CCDC138;nc|ENSG00000163006|Q96M89-2|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	ENSG00000163006|ENST00000295124|CCDC138	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.27178955078125	2	464.272158	926.529764	-0.39656	-0.00018411	-0.20097	-9.3307E-05	-0.59754	-0.00027742	464.2720296950699	20.605	1.4905	20.501	20.178	21.668	-0.10477					56	30	4	0	0	0	1.0574	1	557	557		25.574	1.0549	1	765040			72056	7024	50516	50599	78671	78671					0.06356009365890714
SHLRKAGT	8	Unmodified	_SHLRKAGT_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ACTN2|p.N49D|1|0.28|ENSG00000077522|chr1:236717876-236717876|A/G|missense_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2	nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000077522|P35609-2|ACTN2	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2511901855469	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.0574	1	9853	9853		27.882	1.0861	1	1590300			72057	18075;4418;10836;1616	50517	50600	78672	78672					0.048394536773685104
SHLRKPCR	8	Unmodified	_SHLRKPCR_					0	0	0			REV__ENSG00000152784|ENST00000415738|PRDM8	REV__ENSG00000152784|ENST00000415738|PRDM8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.77740478515625	2	498.779628	995.544702	-0.84369	-0.00042081	-4.3646	-0.002177	-5.2083	-0.0025978	498.7773886298771	26.853	0.71019	26.697	26.351	27.061	-0.15664					38	16	3	0	0	0	1.0239	1	1417	1417		33.516	0	1	642530	+		72058	24864	50518	50601	78673	78673					0.04675177962235466
SHLRSQMW	8	Unmodified	_SHLRSQMW_					0	0	0			REV__CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	REV__CSMD3|p.Q1369Hfs*15|1|0.4|ENSG00000164796|chr8:112556868-112556890|TGGTGCTACCAGCAAAGTGGCCT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.2796020507812	2	522.755818	1043.49708	0.47858	0.00025018	-2.1507	-0.0011243	-1.6721	-0.00087412	522.7548989244499	59.887	0.5579	59.711	59.44	59.998	-0.1761					19	14	2	0	0	0	0.027866	1	6667	6667		31.955	14.59	1	158820	+		72059	19619	50519	50602	78674	78674					-0.022925210286075526
SHLSPEPPKTP	11	Unmodified	_SHLSPEPPKTP_					0	0	0		ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.7958984375	2	595.31422	1188.61389	-0.56609	-0.000337	-1.7085	-0.0010171	-2.2745	-0.0013541	595.8140516525386	61.454	1.2394	61.241	60.612	61.852	-0.21375					39	30	3	0	0	0	0.024756	1	6817	6817		22.58	12.874	1	327520			72060	9438	50520	50603	78675	78675					0.02712495672130899
SHLVQHMLV	9	Unmodified	_SHLVQHMLV_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2892456054688	2	532.289494	1062.56443	-0.56391	-0.00030016	-1.962	-0.0010444	-2.5259	-0.0013445	532.7902731031119	55.063	0.53494	54.832	54.53	55.065	-0.23087					34	14	4	0	0	0	0.024535	1	5913	5913		18.324	0	1	702600			72061	10948	50521	50604	78676	78676					0.03565509182340065
SHLVTIFFL	9	Unmodified	_SHLVTIFFL_					0	0	0		ENST00000398204.8_1_7:87825837-87825987:+|nuORF	ENST00000398204.8_1_7:87825837-87825987:+|nuORF	ENST00000398204.8_1_7:87825837-87825987:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2640991210938	2	538.810585	1075.60662	-0.18997	-0.00010236	-2.8495	-0.0015354	-3.0395	-0.0016377	538.8090619658102	69.522	0.61627	69.271	68.991	69.608	-0.25063					30	14	3	0	0	0	0.024405	1	8070	8070		35.618	7.736	1	329370			72062	13620	50522	50605	78677	78677					0.07183807862384128
SHMEAAHFGDL	11	Unmodified	_SHMEAAHFGDL_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	3	405.513479	1213.51861	0.49807	0.00020197	2.7415	0.0011117	3.2396	0.0013137	405.5145611443005	25.921	0.91553	25.75	25.039	25.955	-0.17078					43	23	2	0	0	0	0.024735	1	1291	1291		5.4129	0	1	182320			72063	2917	50523	50606	78678	78678					-0.07961180790539402
SHMFSFIL	8	Unmodified	_SHMFSFIL_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|72|1|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|72|1|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|72|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.803466796875	2	491.246763	980.478974	-0.8268	-0.00040616	-3.4846	-0.0017118	-4.3114	-0.0021179	491.2449638320315	35.943	0.59862	35.943	35.531	36.129	0					21	15	2	0	0	0	0.027866	1	2760	2760		42.474	0	1	224400			72064	17819	50524	50607	78679	78679					-0.01204656003301352
SHMTRKKI	8	Unmodified	_SHMTRKKI_					0	0	0		ENST00000254250.7_1_8:42693388-42694372:-|nuORF	ENST00000254250.7_1_8:42693388-42694372:-|nuORF	ENST00000254250.7_1_8:42693388-42694372:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2895812988281	2	500.789661	999.564769	-0.28066	-0.00014055	-2.8179	-0.0014112	-3.0985	-0.0015517	501.2900535241059	87.727	1.1522	87.589	87.163	88.315	-0.13734					72	27	4	0	0	0	0.5947	1	10653	10653		76.774	2.5191	1	2622700			72065	11374	50525	50608	78680	78680					0.06496928902197396
SHNPQIRQN	9	Unmodified	_SHNPQIRQN_					0	0	0		ENSG00000169126|ENST00000305242|ODAD2;nc|ENSG00000169126|Q5T2S8-2|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.27783203125	2	547.278503	1092.54245	-1.4898	-0.00081531	-2.3714	-0.0012978	-3.8612	-0.0021131	547.2771932535435	30.72	3.7101	30.72	29.611	33.321	0					193	92	4	0	0	0	0.59099	1	2048	2048		53.351	0.41475	1	3598800			72066	7905	50526	50609	78681	78681					-0.00011579241868275858
SHPEDTMKAFC	11	Unmodified	_SHPEDTMKAFC_					0	0	0		nc|ENSG00000159708|Q1X8D7-2|LRRC36;ENSG00000159708|ENST00000329956|LRRC36	nc|ENSG00000159708|Q1X8D7-2|LRRC36	nc|ENSG00000159708|Q1X8D7-2|LRRC36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.5132751464844	3	422.514491	1264.52164	-0.52472	-0.0002217	-3.5702	-0.0015085	-4.0949	-0.0017302	422.5135125886904	32.05	1.6521	32.05	31.669	33.321	0					165	42	7	0	0	0	1.0471	1	2171	2171		25.892	0.76573	1	32149000			72067	6763	50527	50610	78682	78682					-0.10003673728056128
SHPGLHRYF	9	Unmodified	_SHPGLHRYF_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.322021484375	2	557.283057	1112.55156	-0.47966	-0.00026731	0.27892	0.00015544	-0.20074	-0.00011187	557.2834965613253	29.241	0.8012	29.091	28.7	29.501	-0.14952					29	18	3	0	0	0	0.024457	1	1716	1716		45.952	3.5558	1	208920	+		72068	27536	50528	50611	78683	78683					-0.00021185885543673066
SHPHAPSA	8	Unmodified	_SHPHAPSA_					0	0	0		ENST00000354989.9_1_20:25206534-25206930:+|nuORF	ENST00000354989.9_1_20:25206534-25206930:+|nuORF	ENST00000354989.9_1_20:25206534-25206930:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	402.20574951171875	2	402.193377	802.372201	0.84625	0.00034036	3.4582	0.0013909	4.3045	0.0017312	402.1945529330595	95.416	0.4678	95.42	95.218	95.686	0.0033798					14	10	2	0	0	0	0.027866	1	12123	12123		19.36	0	1	61489			72069	12638	50529	50612	78684	78684					-0.03689070173481923
SHPIAFYN	8	Unmodified	_SHPIAFYN_					0	0	0			REV__ENST00000473523.1_1_3:85008309-85008745:+|nuORF	REV__ENST00000473523.1_1_3:85008309-85008745:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2708435058594	2	474.732335	947.450116	-0.19403	-9.2113E-05	-3.8374	-0.0018217	-4.0314	-0.0019138	474.73018082319885	30.812	0.65891	30.66	30.426	31.085	-0.15231					21	15	2	0	0	0	0.027866	1	2029	2029		25.45	10.585	1	174480	+		72070	33238	50530	50613	78685	78685					-0.025710573081028087
SHPIAFYN	8	Unmodified	_SHPIAFYN_					0	0	0			REV__ENST00000473523.1_1_3:85008309-85008745:+|nuORF	REV__ENST00000473523.1_1_3:85008309-85008745:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.732335	947.450116	-0.13146	-6.2409E-05	-4.105	-0.0019488	-4.2364	-0.0020112	474.7302865993746	30.972	0.45734	30.731	30.497	30.954	-0.24109	0.050772	-0.00016973	NaN	25.45	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202620	+		72071	33238	50530	50613							-0.025710573081028087
SHPIAFYN	8	Unmodified	_SHPIAFYN_					0	0	0			REV__ENST00000473523.1_1_3:85008309-85008745:+|nuORF	REV__ENST00000473523.1_1_3:85008309-85008745:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	474.732335	947.450116	-0.49001	-0.00023263	-3.7707	-0.0017901	-4.2607	-0.0020227	474.73037260368966	30.827	0.46439	30.649	30.366	30.831	-0.17817	-0.030666	0.00014769	NaN	25.45	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178390	+		72072	33238	50530	50613							-0.025710573081028087
SHPKARAPL	9	Unmodified	_SHPKARAPL_					0	0	0			REV__ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	REV__ZNF750|p.R403Pfs*57|1|0.09|ENSG00000141579|chr17:82831247-82831248|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.788818359375	2	488.787976	975.561398	0.039317	1.9217E-05	1.9411	0.00094879	1.9804	0.000968	488.78909602814883	106.25	0.41726	106.24	106.09	106.51	-0.0013123					16	12	2	0	0	0	0.70186	1	13607	13607		45.952	5.1738	1	271100	+		72073	37820	50531	50614	78686	78686					0.07264002119836732
SHPKTGSV	8	Unmodified	_SHPKTGSV_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.22509765625	2	406.716685	811.418816	0.12473	5.0728E-05	2.5576	0.0010402	2.6824	0.001091	406.71729446153654	27.235	0.61919	27.222	26.953	27.572	-0.012983					21	16	2	0	0	0	0.027866	1	1414	1414		14.865	13.957	1	64324	+		72074	21146	50532	50615	78687	78687					0.0055636965781786785
SHPLEPGRAL	10	Unmodified	_SHPLEPGRAL_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4;PLCB4|p.K933Rfs*7|1|0.16|ENSG00000101333|chr20:9444195-9444195|A/-|frameshift_variant	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2821655273438	2	538.795998	1075.57744	-0.94111	-0.00050706	0.85343	0.00045982	-0.087679	-4.7241E-05	538.7963229080495	52.147	0.52811	52.028	51.833	52.361	-0.11875					22	13	2	0	0	0	0.03519	1	5402	5402		51.193	3.5354	1	307150			72075	15486	50533	50616	78688	78688					0.04267663566088231
SHPVNPLQQK	10	Unmodified	_SHPVNPLQQK_					0	0	0			REV__ENSG00000181754|ENST00000369864|AMIGO1	REV__ENSG00000181754|ENST00000369864|AMIGO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.3160400390625	2	574.314554	1146.61456	-0.79754	-0.00045804	3.9814	0.0022866	3.1838	0.0018285	574.3166765447795	56.6	0.84776	56.698	56.359	57.207	0.097893					54	23	4	0	0	0	1.0393	1	6248	6248		40.778	1.5253	1	4047500	+		72076	27421	50534	50617	78689	78689					0.04711335111824155
SHPVPLVVI	9	Unmodified	_SHPVPLVVI_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7307434082031	2	480.797478	959.580402	-0.061343	-2.9494E-05	-0.78927	-0.00037948	-0.85062	-0.00040897	480.79691867238705	32.213	0.77657	32.213	31.829	32.606	0					41	19	3	0	0	0	0.024262	1	2155	2155		57.811	13.694	1	528480	+		72077	32200	50535	50618	78690	78690					0.09899538690910958
SHPVRHQP	8	Unmodified	_SHPVRHQP_					0	0	0		nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	nc|ENSG00000229921|Q9Y6Z4|KIF25-AS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3056640625	2	479.2543	956.494047	0.14471	6.9352E-05	-2.2326	-0.00107	-2.0879	-0.0010006	479.2532870225421	23.367	0.3584	23.367	23.123	23.482	0					11	8	2	0	0	0	0.027866	1	921	921		23.042	0	1	31440			72078	18743	50536	50619	78691	78691					0.01405971908900483
SHPVSAVAP	9	Unmodified	_SHPVSAVAP_					0	0	0			REV__ENST00000592549.1_1_18:57492004-57492280:+|nuORF	REV__ENST00000592549.1_1_18:57492004-57492280:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.7449951171875	2	432.732335	863.450116	-0.61053	-0.0002642	-3.8493	-0.0016657	-4.4598	-0.0019299	432.7289739969752	27.932	0.23779	27.764	27.61	27.847	-0.16816					7	5	2	0	0	0	0.024466	1	1583	1583		12.207	0	1	23254	+		72079	35748	50537	50620	78692	78692					0.012929426918958598
SHPYPTVI	8	Unmodified	_SHPYPTVI_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2378845214844	2	457.242535	912.470518	-0.15639	-7.1508E-05	-2.4218	-0.0011073	-2.5782	-0.0011788	457.2406061566764	35.477	0.77015	35.521	35.267	36.037	0.04406					22	19	2	0	0	0	0.027866	1	2690	2690		26.796	19.603	1	72856			72080	8174	50538	50621	78693	78693					0.010781133516957198
SHQDWLKT	8	Unmodified	_SHQDWLKT_					0	0	0			REV__chr19:35511813-35512590|224|20.57|0.84|4.62|-|2|DMKN,DMKN|1	REV__chr19:35511813-35512590|224|20.57|0.84|4.62|-|2|DMKN,DMKN|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2823181152344	2	507.753798	1013.49304	0.038262	1.9428E-05	1.0054	0.00051048	1.0436	0.00052991	507.7542032211769	24.22	0.22184	24.004	23.822	24.044	-0.2151					7	4	2	0	0	0	0.027866	1	1022	1022		38.806	3.1879	1	82077	+		72081	19394	50539	50622	78694	78694					-0.013162872506768508
SHQFRLKR	8	Unmodified	_SHQFRLKR_					0	0	0		ENSG00000111752|ENST00000544916|PHC1	ENSG00000111752|ENST00000544916|PHC1	ENSG00000111752|ENST00000544916|PHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.311279296875	2	536.312149	1070.60975	0.37148	0.00019923	-1.3185	-0.00070715	-0.94706	-0.00050792	536.3114770188381	96.992	0.75333	96.992	96.66	97.414	-3.0518E-05					39	16	3	0	0	0	1.0574	1	12295	12295		25.45	2.8705	1	557790			72082	3146	50540	50623	78695	78695					0.07726495759743557
SHQKGKPVPR	10	Unmodified	_SHQKGKPVPR_					0	0	0		ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.32958984375	2	567.330539	1132.64652	-0.38591	-0.00021894	-0.9009	-0.00051111	-1.2868	-0.00073005	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0816	1	11345	11345		35.152	2.3396	1	4298500			72083	9734	50541	50624	78696	78696					0.0855074758567298
SHQKGKPVPR	10	Unmodified	_SHQKGKPVPR_					0	0	0		ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.329833984375	2	567.330539	1132.64652	0.053871	3.0563E-05	-0.83373	-0.000473	-0.77986	-0.00044244	567.3299406004519	88.124	1.3605	87.986	87.038	88.398	-0.13744					93	32	4	0	0	0	1.0719	1	10718	10718		36.447	11.928	1	1828400			72084	9734	50541	50624	78697	78697					0.0855074758567298
SHQTEETLT	9	Unmodified	_SHQTEETLT_					0	0	0		ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant;ALMS1|p.K1607Rfs*9|1|0.08|ENSG00000116127|chr2:73451341-73451341|A/-|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.2792358398438	2	523.24346	1044.47237	0.088214	4.6157E-05	-0.82548	-0.00043193	-0.73727	-0.00038577	523.2429853388238	60.256	0.34278	60.058	59.838	60.181	-0.19742					13	8	2	0	0	0	0.024523	1	6674	6674		21.96	6.3237	1	74790			72085	64	50542	50625	78698	78698					-0.048089224209888926
SHRLRLYE	8	Unmodified	_SHRLRLYE_					0	0	0		ENSG00000163254|ENST00000282141|CRYGC	ENSG00000163254|ENST00000282141|CRYGC	ENSG00000163254|ENST00000282141|CRYGC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.29541015625	2	537.296165	1072.57778	-1.4748	-0.00079243	0.17328	9.3102E-05	-1.3016	-0.00069933	537.2962837343906	37.838	1.4301	37.871	37.226	38.656	0.032269					116	39	5	0	0	0	0.94517	1	3098	3098		45.952	0	1	12223000			72086	7054	50543	50626	78699	78699					0.044390832859335205
SHRRQVEL	8	Unmodified	_SHRRQVEL_					0	0	0			REV__ENSG00000159674|ENST00000290902|SPON2	REV__ENSG00000159674|ENST00000290902|SPON2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7879638671875	2	512.785964	1023.55738	0.12625	6.4738E-05	2.1633	0.0011093	2.2896	0.0011741	512.7869369561231	71.396	1.045	71.121	70.743	71.788	-0.27509					52	24	3	0	0	0	0.77775	1	8315	8315		60.972	0.67798	1	4723800	+		72087	25269	50544	50627	78700	78700					0.046539126261336605
SHRSWIVN	8	Unmodified	_SHRSWIVN_					0	0	0		ENST00000565919.1_1_16:28962342-28963698:+|nuORF;ENST00000565752.5_1_16:28962332-28963698:+|nuORF	ENST00000565919.1_1_16:28962342-28963698:+|nuORF	ENST00000565919.1_1_16:28962342-28963698:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3065185546875	2	499.761958	997.509363	0.26898	0.00013442	-0.25629	-0.00012808	0.012687	6.3404E-06	499.7617521984382	94.138	0.34178	94.016	93.798	94.14	-0.12215					9	7	2	0	0	0	0.027866	1	11599	11599		42.396	9.5837	1	55585			72088	16928	50545	50628	78701	78701					0.010508387061008762
SHRTAEQF	8	Unmodified	_SHRTAEQF_					0	0	0			REV__ENST00000361131.4_1_6:150570435-150570705:+|nuORF	REV__ENST00000361131.4_1_6:150570435-150570705:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2499694824219	2	488.235773	974.456993	-0.59245	-0.00028926	1.6978	0.00082891	1.1053	0.00053965	488.23675890183466	25.919	0.30647	25.896	25.777	26.083	-0.023088					8	6	2	0	0	0	0.027866	1	1286	1286		44.117	0	1	33544	+		72089	30933	50546	50629	78702	78702					-0.03125744427518384
SHSAIGRQ	8	Unmodified	_SHSAIGRQ_					0	0	0			REV__ENST00000320248.3_1_8:1948885-1949284:+|nuORF	REV__ENST00000320248.3_1_8:1948885-1949284:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2253112792969	2	428.225208	854.435863	-0.81602	-0.00034944	0.95737	0.00040997	0.14135	6.053E-05	428.22558139776544	25.679	0.92011	25.679	25.363	26.283	0					54	21	4	0	0	0	1.0009	1	1254	1254		37.159	1.5408	1	1479100	+		72090	30331	50547	50630	78703	78703					0.0028229026362396326
SHSAIWSF	8	Unmodified	_SHSAIWSF_					0	0	0			REV__ENST00000295878.7_1_3:113683814-113683868:-|nuORF	REV__ENST00000295878.7_1_3:113683814-113683868:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.3056640625	2	467.72451	933.434466	0.53726	0.00025129	0.55153	0.00025796	1.0888	0.00050925	467.72422171556013	53.135	0.39195	52.877	52.683	53.075	-0.25839					13	9	2	0	0	0	0.027866	1	5561	5561		18.324	0	1	62483	+		72091	29985	50548	50631	78704	78704					-0.03491343825135118
SHSCKGEL	8	Unmodified	_SHSCKGEL_					0	0	0			REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.69866943359375	2	430.700177	859.385802	-0.65421	-0.00028177	-3.1	-0.0013352	-3.7542	-0.0016169	430.6987465561356	33.116	0.98684	33.116	32.79	33.777	0					64	26	4	0	0	0	0.59392	2	2360	2347;2360		76.847	3.0466	1	2981600	+		72092	32417	50549	50632	78705;78706	78706					-0.049515804565544386
SHSCKGEL	8	Unmodified	_SHSCKGEL_					0	0	0			REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.6985778808594	2	430.700177	859.385802	-0.58783	-0.00025318	-3.2183	-0.0013861	-3.8061	-0.0016393	430.69869432987184	32.912	0.76584	32.919	32.589	33.355	0.0066261					61	20	4	0	0	0	0.78609	1	2318	2318		60.294	7.9948	1	2943400	+		72093	32417	50549	50632	78707	78707					-0.049515804565544386
SHSCKGEL	8	Unmodified	_SHSCKGEL_					0	0	0			REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.6986389160156	2	430.700177	859.385802	0.37146	0.00015999	-4.1915	-0.0018053	-3.82	-0.0016453	430.6982899602663	32.636	0.86105	32.699	32.39	33.251	0.062885					62	22	4	0	0	0	0.91239	1	2252	2252		50.025	2.1089	1	2369200	+		72094	32417	50549	50632	78708	78708					-0.049515804565544386
SHSCKGEL	8	Unmodified	_SHSCKGEL_					0	0	0			REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	430.700177	859.385802	-0.65421	-0.00028177	-3.1	-0.0013352	-3.7542	-0.0016169	430.6987465561356	33.116	0.98684	33.116	32.79	33.777	0	0.20505	0.0003941	NaN	76.847	64	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2981600	+		72095	32417	50549	50632							-0.049515804565544386
SHSCKGEL	8	Unmodified	_SHSCKGEL_					0	0	0			REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	430.700177	859.385802	-0.58783	-0.00025318	-3.2183	-0.0013861	-3.8061	-0.0016393	430.69869432987184	32.912	0.76584	32.919	32.589	33.355	0.0066261	0.0075777	0.00029223	NaN	76.847	61	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2943400	+		72096	32417	50549	50632							-0.049515804565544386
SHSFDIKPF	9	Unmodified	_SHSFDIKPF_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7923583984375	2	539.271824	1076.5291	-0.57128	-0.00030807	3.9421	0.0021258	3.3708	0.0018178	539.2776578763774	78.007	1.1521	78.007	77.295	78.447	0					54	27	4	0	0	0	0.024405	1	9692	9692		44.117	5.3107	1	131130			72097	4579	50550	50633	78709	78709					-0.006108300738105754
SHSFDIKPF	9	Unmodified	_SHSFDIKPF_					0	0	0		nc|ENSG00000132170|P37231-3|PPARG;ENST00000477039.5_1_3:12393091-12447643:+|nuORF;ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	nc|ENSG00000132170|P37231-3|PPARG	nc|ENSG00000132170|P37231-3|PPARG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.271824	1076.5291	0.37218	0.00020071	2.7547	0.0014855	3.1269	0.0016862	539.7742167555331	77.905	0.46194	77.662	77.447	77.909	-0.24233	-0.13822	-0.00094964	NaN	26.693	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95622			72098	4579	50550	50633							-0.006108300738105754
SHSGEYAEET	10	Unmodified	_SHSGEYAEET_					0	0	0			REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.3261108398438	2	555.222725	1108.4309	-0.10204	-5.6658E-05	0.83491	0.00046356	0.73287	0.0004069	555.2230488330613	54.862	0.43204	54.631	54.459	54.891	-0.23087					15	11	2	0	0	0	0.03519	1	5851	5851		27.882	0	1	116040	+		72099	35437	50551	50634	78710	78710					-0.1189810318032869
SHSGSPEKKAE	11	Unmodified	_SHSGSPEKKAE_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.73974609375	2	578.783284	1155.55202	-0.86656	-0.00050155	1.4628	0.00084663	0.59622	0.00034508	578.7841869886227	35.101	0.33976	34.914	34.721	35.061	-0.18675					14	8	2	0	0	0	0.024745	1	2638	2638		20.837	10.572	1	140450			72100	5277	50552	50635	78711	78711					-0.01953855746978661
SHSIMVGKPL	10	Unmodified	_SHSIMVGKPL_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2841796875	2	534.797152	1067.57975	-1.4656	-0.00078381	-1.3289	-0.0007107	-2.7945	-0.0014945	535.2978451323626	38.005	0.16856	37.923	37.848	38.017	-0.082516					6	4	2	0	0	0	0.03519	1	3135	3135		35.618	8.9254	1	305640	+		72101	22722	50553	50636	78712	78712					0.04866375979554505
SHSKAKLID	9	Unmodified	_SHSKAKLID_					0	0	0			REV__ENST00000583912.1_1_17:73383794-73389709:-|nuORF	REV__ENST00000583912.1_1_17:73383794-73389709:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.79571533203125	2	499.785099	997.555644	-0.28503	-0.00014246	-0.16344	-8.1686E-05	-0.44848	-0.00022414	499.78481923143994	58.51	0.69221	58.323	58.101	58.793	-0.18705					25	18	2	0	0	0	0.023655	1	6625	6625		60.118	6.7668	1	649970	+		72102	35558	50554	50637	78713	78713					0.05676858817525954
SHSKKLTK	8	Unmodified	_SHSKKLTK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.73138427734375	2	464.782359	927.550165	0.24892	0.00011569	-0.66244	-0.00030789	-0.41352	-0.0001922	464.7818592345005	40.361	0.32692	40.249	40.055	40.382	-0.11223					16	8	2	0	0	0	0.027866	1	3509	3509		16.473	10.16	1	220310			72103	5429	50555	50638	78714	78714					0.08349180025697933
SHSPSRPTLP	10	Unmodified	_SHSPSRPTLP_					0	0	0			REV__ENSG00000180035|ENST00000613509|ZNF48	REV__ENSG00000180035|ENST00000613509|ZNF48	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.76416015625	2	539.78563	1077.55671	-0.50311	-0.00027157	4.3126	0.0023279	3.8095	0.0020563	539.7872619249399	49.868	0.41504	49.717	49.33	49.745	-0.1512					13	10	2	0	0	0	0.03519	1	5141	5141		49.536	15.364	1	180990	+		72104	27309	50556	50639	78715	78715					0.02103073186435722
SHSSHSLSAR	10	Unmodified	_SHSSHSLSAR_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2841796875	2	534.762686	1067.51082	-1.5652	-0.00083699	-0.43507	-0.00023266	-2.0002	-0.0010697	535.2627542963943	37.807	0.381	37.725	37.537	37.918	-0.082512					17	10	2	0	0	0	0.03519	1	3135	3135		27.882	0	1	73880	+		72105	25052	50557	50640	78716	78716					-0.020235719958009213
SHSSPFIVT	9	Unmodified	_SHSSPFIVT_					0	0	0			REV__ENSG00000121381|ENST00000240691|TAS2R9	REV__ENSG00000121381|ENST00000240691|TAS2R9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2848205566406	2	487.750724	973.486896	-0.21859	-0.00010662	4.2165	0.0020566	3.9979	0.00195	487.7524011197799	54.988	0.55817	54.838	54.608	55.166	-0.15036					22	15	2	0	0	0	0.024294	1	6067	6067		37.159	22.294	1	503040	+		72106	22593	50558	50641	78717	78717					-0.0009080548217070827
SHTIGLIV	8	Unmodified	_SHTIGLIV_					0	0	0			REV__nc|ENSG00000143494|Q86V25-4|VASH2	REV__nc|ENSG00000143494|Q86V25-4|VASH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.24053955078125	2	420.252903	838.491253	-0.15091	-6.3422E-05	-0.52826	-0.000222	-0.67918	-0.00028543	420.25271430780214	23.764	0.46218	23.584	23.318	23.78	-0.17989					17	10	2	0	0	0	0.027866	1	955	955		35.201	0	1	106180	+		72107	36734	50559	50642	78718	78718					0.0655470373138769
SHTIGLIV	8	Unmodified	_SHTIGLIV_					0	0	0			REV__nc|ENSG00000143494|Q86V25-4|VASH2	REV__nc|ENSG00000143494|Q86V25-4|VASH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.24029541015625	2	420.252903	838.491253	2.1538	0.00090515	2.3607	0.00099208	4.5145	0.0018972	420.2540249283578	23.791	0.30856	23.6	23.485	23.794	-0.19117					8	6	2	0	0	0	0.027866	1	951	951		26.796	0	1	24953	+		72108	36734	50559	50642	78719	78719					0.0655470373138769
SHTILWVMF	9	Unmodified	_SHTILWVMF_					0	0	0			REV__ENSG00000165996|ENST00000361271|HACD1	REV__ENSG00000165996|ENST00000361271|HACD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3130493164062	2	567.294245	1132.57394	0.20149	0.0001143	-3.7092	-0.0021042	-3.5077	-0.0019899	567.292714574555	67.89	0.28535	67.657	67.471	67.756	-0.23376					9	6	2	0	0	0	0.024497	1	7810	7810		28.254	9.9299	1	58616	+		72109	25954	50560	50643	78720	78720					0.012952774678524293
SHTKVKTANID	11	Unmodified	_SHTKVKTANID_					0	0	0			REV__ENSG00000109089|ENST00000337231|CDR2L	REV__ENSG00000109089|ENST00000337231|CDR2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	608.3111572265625	2	607.330402	1212.64625	-0.64211	-0.00038997	-1.5014	-0.00091186	-2.1435	-0.0013018	607.3294147071582	50.071	0.56497	49.966	49.708	50.273	-0.10558					34	14	3	0	0	0	0.02473	1	5034	5034		23.523	2.5758	1	905880	+		72110	21780	50561	50644	78721	78721					0.04843283075138061
SHTSVNGKVVY	11	Unmodified	_SHTSVNGKVVY_					0	0	0			REV__ENST00000512959.1_1_4:55595508-55599400:+|nuORF	REV__ENST00000512959.1_1_4:55595508-55599400:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.7960205078125	2	595.811845	1189.60914	-1.5833	-0.00094335	4.3753	0.0026068	2.792	0.0016635	595.8142292983838	60.741	0.39225	60.565	60.322	60.714	-0.1761					15	9	2	0	0	0	0.024795	1	6798	6798		42.864	0	1	101540	+		72111	34146	50562	50645	78722	78722					0.021916115293834082
SHTYIPVP	8	Unmodified	_SHTYIPVP_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2692565917969	2	457.242535	912.470518	-0.44663	-0.00020422	2.1443	0.00098047	1.6977	0.00077625	457.24248836488715	47.269	0.8432	47.328	46.803	47.647	0.059097					51	23	3	0	0	0	0.027866	1	4684	4684		37.028	6.5248	1	285140			72112	848	50563	50646	78723	78723					0.010781133517070884
SHVGLLRA	8	Unmodified	_SHVGLLRA_					0	0	0			REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.77508544921875	2	426.756144	851.497735	-0.034932	-1.4907E-05	0.2103	8.9747E-05	0.17537	7.484E-05	426.75607671990525	43.147	0.4954	42.91	42.679	43.174	-0.23737					22	12	2	0	0	0	0.027866	1	3953	3953		25.45	0	1	432740	+		72113	33891	50564	50647	78724	78724					0.06604641682758938
SHVGLLRA	8	Unmodified	_SHVGLLRA_					0	0	0			REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	REV__ENST00000498783.5_1_9:130687427-130690958:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.77508544921875	2	426.756144	851.497735	-0.35974	-0.00015352	0.40627	0.00017338	0.046536	1.986E-05	426.75621111268373	43.197	0.56144	42.971	42.714	43.275	-0.22597					23	14	2	0	0	0	0.027866	1	3952	3952		12.207	0	1	658120	+		72114	33891	50564	50647	78725	78725					0.06604641682758938
SHVLPLDEI	9	Unmodified	_SHVLPLDEI_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2529907226562	2	511.779482	1021.54441	-0.21873	-0.00011194	1.8987	0.00097172	1.68	0.00085978	511.7793081359103	54.92	0.62429	54.769	54.507	55.132	-0.15036					23	14	2	0	0	0	0.02435	1	5981	5981		42.396	7.1954	1	127770			72115	3697	50565	50648	78726	78726					0.034500367233818
SHVPGWKP	8	Unmodified	_SHVPGWKP_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.7816162109375	2	454.24287	906.471186	0.036892	1.6758E-05	1.8168	0.00082529	1.8537	0.00084205	454.2441496761498	41.606	0.37607	41.47	41.215	41.591	-0.13553					14	9	2	0	0	0	0.027866	1	3662	3662		17.365	5.8539	1	49413	+		72116	27967	50566	50649	78727	78727					0.014209527914204045
SHVQQVSVWY	10	Unmodified	_SHVQQVSVWY_					0	0	0			REV__ENST00000569028.2_1_16:34712221-34712584:-|nuORF	REV__ENST00000569028.2_1_16:34712221-34712584:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.9001159667969	3	411.540134	1231.59857	-0.34738	-0.00014296	0.41096	0.00016913	0.063585	2.6168E-05	411.5398926868503	28.658	0.43218	28.489	28.337	28.769	-0.16897					17	9	2	0	0	0	0.03519	1	1709	1709		30.569	12.736	1	79390	+		72117	35362	50567	50650	78728	78728					-0.007963711250340566
SHVRIHHVFQE	11	Unmodified	_SHVRIHHVFQE_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.28448486328125	3	463.577582	1387.71092	-0.16286	-7.5498E-05	-1.0038	-0.00046534	-1.1667	-0.00054084	463.57699701496415	24.642	0.82186	24.467	24.129	24.95	-0.17484					25	18	2	0	0	0	0.024809	1	1090	1090		22.562	0.78116	1	71078	+		72118	20729	50568	50651	78729	78729					0.032569026717965244
SHWEILLT	8	Unmodified	_SHWEILLT_					0	0	0		ENST00000552353.2_1_12:93397587-93397737:+|nuORF	ENST00000552353.2_1_12:93397587-93397737:+|nuORF	ENST00000552353.2_1_12:93397587-93397737:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2877502441406	2	499.768917	997.523281	1.1417	0.00057058	1.2455	0.00062245	2.3872	0.001193	500.27126558574435	59.335	0.45275	59.335	59.145	59.598	0					17	11	2	0	0	0	0.027866	1	6809	6809		24.203	2.2429	1	50850			72119	16623	50569	50652	78730	78730					0.024420714145321654
SHWSPELSL	9	Unmodified	_SHWSPELSL_					0	0	0		ENST00000594977.5_1_19:8610332-8615096:-|nuORF	ENST00000594977.5_1_19:8610332-8615096:-|nuORF	ENST00000594977.5_1_19:8610332-8615096:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2844848632812	2	528.261456	1054.50836	-0.08441	-4.459E-05	3.319	0.0017533	3.2346	0.0017087	528.2640784888856	86.605	0.76485	86.628	86.288	87.053	0.022942					28	17	3	0	0	0	0.024381	1	10865	10865		45.952	8.7928	1	76608			72120	17416	50570	50653	78731	78731					-0.016714204534537203
SHWSPELSL	9	Unmodified	_SHWSPELSL_					0	0	0		ENST00000594977.5_1_19:8610332-8615096:-|nuORF	ENST00000594977.5_1_19:8610332-8615096:-|nuORF	ENST00000594977.5_1_19:8610332-8615096:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.261456	1054.50836	-0.25327	-0.00013379	6.2219	0.0032868	5.9686	0.003153	528.2638689610202	86.697	0.51247	86.697	86.386	86.899	0	-0.097439	-0.00090533	NaN	37.159	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66469			72121	17416	50570	50653							-0.016714204534537203
SHYGSNMMPQ	10	Unmodified	_SHYGSNMMPQ_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.794921875	2	576.234058	1150.45356	0.043856	2.5272E-05	3.8775	0.0022343	3.9213	0.0022596	576.2361496307765	63.815	0.61382	63.563	63.336	63.95	-0.25141					35	16	3	0	0	0	0.03519	1	7454	7454		14.137	0	1	241190	+		72122	25086	50571	50654	78732	78732					-0.11564498588063543
SHYKMLYALC	10	Unmodified	_SHYKMLYALC_					0	0	0			REV__ENSG00000189037|ENST00000339042|DUSP21	REV__ENSG00000189037|ENST00000339042|DUSP21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.542724609375	3	410.199955	1227.57804	0.14743	6.0477E-05	-2.9427	-0.0012071	-2.7953	-0.0011466	410.19861911411334	22.383	0.65968	22.181	21.808	22.468	-0.20199					16	13	2	0	0	0	0.03519	1	713	713		27.047	12.961	1	18558	+		72123	28086	50572	50655	78733	78733					-0.026650011007177454
SHYPQPSPPQY	11	Unmodified	_SHYPQPSPPQY_					0	0	0		nc|ENSG00000111087|P08151-2|GLI1;ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-3|GLI1	nc|ENSG00000111087|P08151-2|GLI1	nc|ENSG00000111087|P08151-2|GLI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7801818847656	3	434.20341	1299.5884	0.30991	0.00013456	1.5659	0.0006799	1.8758	0.00081446	434.5373831572137	48.539	0.17517	48.357	48.198	48.373	-0.18206					5	4	2	0	0	0	0.024735	1	4794	4794		16.53	0	1	47609			72124	3087	50573	50656	78734	78734					-0.049409788502771335
SIAALEYGF	9	Unmodified	_SIAALEYGF_					0	0	0			REV__SLC2A10|p.V28A|1|0.1|ENSG00000197496|chr20:46725119-46725119|T/C|missense_variant	REV__SLC2A10|p.V28A|1|0.1|ENSG00000197496|chr20:46725119-46725119|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7457580566406	2	485.74765	969.480748	-0.83781	-0.00040696	-3.5885	-0.0017431	-4.4263	-0.0021501	485.7459014219184	62.233	0.80754	62.055	61.576	62.383	-0.17781					64	20	4	0	0	0	0.29104	1	6985	6985		76.847	2.8719	1	5867300	+		72125	37501	50574	50657	78735	78735					-0.005213237137013493
SIAAVLPKV	9	Unmodified	_SIAAVLPKV_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.7533264160156	2	449.292028	896.569503	0.30355	0.00013638	0.27453	0.00012334	0.57807	0.00025972	449.2919474161312	61.351	0.61082	61.422	61.095	61.706	0.071125					34	15	3	0	0	0	0.0242	1	7014	7014		60.118	34.544	1	228290			72126	7834	50575	50658	78736	78736					0.11708136316622131
SIAEKLGIN	9	Unmodified	_SIAEKLGIN_					0	0	0		ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	ENSG00000156466|ENST00000287020|GDF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7774353027344	2	472.7742	943.533846	0.29213	0.00013811	4.3873	0.0020742	4.6794	0.0022123	472.7760702488584	79.302	2.2495	79.321	78.441	80.691	0.018677					107	53	3	0	0	0	0.70156	1	9716	9716		45.972	0	1	1137800			72127	6530	50576	50659	78737	78737					0.05982054068954312
SIAFIRDI	8	Unmodified	_SIAFIRDI_					0	0	0			REV__ENSG00000111817|ENST00000644252|DSE	REV__ENSG00000111817|ENST00000644252|DSE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.2637023925781	2	467.77146	933.528367	-1.1869	-0.0005552	0.11373	5.3199E-05	-1.0732	-0.000502	467.7713699444504	44.066	0.50744	43.846	43.634	44.142	-0.21939					18	13	2	0	0	0	0.027866	1	4039	4039		23.042	0	1	221770	+		72128	21948	50577	50660	78738	78738					0.058943752771256186
SIAGKSYIIQ	10	Unmodified	_SIAGKSYIIQ_					0	0	0			REV__ENSG00000141506|ENST00000447110|PIK3R5	REV__ENSG00000141506|ENST00000447110|PIK3R5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.28564453125	2	540.308406	1078.60226	-0.39457	-0.00021319	-2.3811	-0.0012865	-2.7756	-0.0014997	540.3069198230572	22.694	0.55852	22.492	22.048	22.607	-0.20199					19	11	2	0	0	0	0.03519	1	780	780		60.118	0	1	82004	+		72129	24098	50578	50661	78739	78739					0.0661029864882039
SIALDRQSLN	10	Unmodified	_SIALDRQSLN_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8043823242188	2	558.80402	1115.59349	-0.43841	-0.00024498	-0.21056	-0.00011766	-0.64897	-0.00036264	558.8038714821063	49.007	1.0114	48.825	48.408	49.419	-0.18206					76	26	5	0	0	0	1.0002	1	4894	4894		45.972	0	1	7281600	+		72130	25098	50579	50662	78740	78740					0.04031325012351772
SIALLVER	8	Unmodified	_SIALLVER_					0	0	0		ENST00000465952.5_1_13:31192116-31195964:+|nuORF	ENST00000465952.5_1_13:31192116-31195964:+|nuORF	ENST00000465952.5_1_13:31192116-31195964:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26885986328125	2	450.779285	899.544017	-0.83207	-0.00037508	0.14045	6.331E-05	-0.69162	-0.00031177	450.77922865093353	37.938	0.46157	37.966	37.596	38.058	0.02784					36	12	4	0	0	0	0.027866	1	3089	3089		40.573	7.7602	1	3329000			72131	14800	50580	50663	78741	78741					0.09022661794188025
SIAPAHTQV	9	Unmodified	_SIAPAHTQV_					0	0	0			REV__ENST00000602583.5_1_16:85741146-85741365:-|nuORF	REV__ENST00000602583.5_1_16:85741146-85741365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.2794494628906	2	462.250892	922.48723	0.057971	2.6797E-05	1.8748	0.00086663	1.9328	0.00089342	462.2507322568239	42.651	0.91418	42.512	42.042	42.956	-0.13929					72	25	4	0	0	0	0.023635	1	3964	3964		66.429	10.925	1	1111100	+		72132	35881	50581	50664	78742	78742					0.02288614237670572
SIAPFHICY	9	Unmodified	_SIAPFHICY_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.818603515625	2	525.757495	1049.50044	-0.043736	-2.2994E-05	2.8652	0.0015064	2.8215	0.0014834	525.7587894126681	71.092	0.39149	71.092	70.909	71.301	0					14	9	2	0	0	0	0.024466	1	8586	8586		18.324	0	1	133860			72133	5099	50582	50665	78743	78743					-0.022332709746024193
SIARTINEV	9	Unmodified	_SIARTINEV_					0	0	0		ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	ENSG00000248746|ENST00000513398|ACTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.7840576171875	2	501.782556	1001.55056	0.29963	0.00015035	2.7719	0.0013909	3.0715	0.0015412	501.783708279231	72.283	0.71041	72.018	71.759	72.469	-0.26456					36	16	3	0	0	0	0.28753	1	8504	8504		77.318	13.11	1	3879400			72134	10836	50583	50666	78744	78744					0.04984554954921805
SIASDVLVY	9	Unmodified	_SIASDVLVY_					0	0	0			REV__ENSG00000100373|ENST00000216211|UPK3A	REV__ENSG00000100373|ENST00000216211|UPK3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2742004394531	2	483.760758	965.506963	-1.0829	-0.00052387	-1.6669	-0.00080636	-2.7498	-0.0013302	483.759938510058	30.681	0.45289	30.681	30.467	30.92	0					21	10	3	0	0	0	0.024386	1	1961	1961		25.45	7.1258	1	129660	+		72135	21105	50584	50667	78745	78745					0.02282945457761798
SIAVGLSILN	10	Unmodified	_SIAVGLSILN_					0	0	0			REV__ENSG00000186777|ENST00000419098|ZNF732	REV__ENSG00000186777|ENST00000419098|ZNF732	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3065185546875	2	493.797675	985.580796	-0.19079	-9.4212E-05	0.26557	0.00013114	0.074775	3.6924E-05	493.7974836790505	56.087	0.4403	55.931	55.554	55.995	-0.15602					24	11	3	0	0	0	0.03519	1	6212	6212		99.375	0	1	1126800	+		72136	27881	50585	50668	78746	78746					0.08742913620096715
SIAVKLFKFSR	11	Unmodified	_SIAVKLFKFSR_					0	0	0		ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant;ENSG00000170214|ENST00000306675|ADRA1B	ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant	ADRA1B|p.D327Tfs*88|1|0.37|ENSG00000170214|chr5:159971902-159971902|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	648.3933715820312	2	648.395348	1294.77614	-2.3194	-0.0015039	-1.2634	-0.00081921	-3.5828	-0.0023231	648.3947727182727	105.47	0.99561	105.35	105.03	106.03	-0.12444					66	30	4	0	0	0	1.0075	1	13123	13123		35.152	4.6484	1	1302600			72137	40	50586	50669	78747	78747					0.14054504144928615
SIAVVVILW	9	Unmodified	_SIAVVVILW_					0	0	0			REV__ENSG00000169860|ENST00000305097|P2RY1	REV__ENSG00000169860|ENST00000305097|P2RY1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.3133544921875	2	500.315503	998.616454	-0.2748	-0.00013749	-4.2203	-0.0021115	-4.4951	-0.002249	500.3134558560037	76.002	1.4656	75.826	75.507	76.973	-0.17545					129	35	6	0	0	0	0.36105	1	9044	9044		68.485	4.9508	1	45674000	+		72138	26406	50587	50670	78748	78748					0.11708995867752492
SICIYIWY	8	Unmodified	_SICIYIWY_					0	0	0			REV__ENST00000361727.7_1_7:148113442-148113583:+|nuORF	REV__ENST00000361727.7_1_7:148113442-148113583:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7747192382812	2	530.762246	1059.50994	0.022732	1.2066E-05	-1.706	-0.0009055	-1.6833	-0.00089344	530.7618048853525	57.066	0.3376	56.842	56.661	56.998	-0.2248					12	8	2	0	0	0	0.027866	1	6219	6219		54.765	12.369	1	107900	+		72139	30948	50588	50671	78749	78749					-0.017435026890780136
SICLPLLSV	9	Unmodified	_SICLPLLSV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7766418457031	2	472.777896	943.54124	0.37631	0.00017791	-3.4857	-0.0016479	-3.1093	-0.00147	472.7760629626344	79.193	2.2086	79.193	78.122	80.331	0					110	52	3	0	0	0	0.25032	2	9837	9837;9850		82.305	11.009	1	1289400			72140	2021	50589	50672	78750;78751	78750					0.06721070345020053
SICLPLLSV	9	Unmodified	_SICLPLLSV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.77667236328125	2	472.777896	943.54124	-0.34485	-0.00016304	-2.8279	-0.001337	-3.1727	-0.0015	472.7763802643566	79.401	2.2977	79.229	78.195	80.493	-0.17226					108	54	3	0	0	0	0.11848	5	9802	9793;9802;9828;9841;9853		106.42	12.409	1	1264700			72141	2021	50589	50672	78752;78753;78754;78755;78756	78753					0.06721070345020053
SICLPLLSV	9	Unmodified	_SICLPLLSV_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7765808105469	2	472.777896	943.54124	0.29213	0.00013811	-3.432	-0.0016226	-3.1399	-0.0014845	472.7760702488584	79.302	2.2495	79.321	78.441	80.691	0.018677					107	53	3	0	0	0	0.33245	3	9788	9738;9762;9788		71.296	9.6365	1	1137800			72142	2021	50589	50672	78757;78758;78759	78759					0.06721070345020053
SICQAVGII	9	Unmodified	_SICQAVGII_					0	0	0		nc|ENSG00000152990|Q8IWK6-3|ADGRA3;ENSG00000152990|ENST00000334304|ADGRA3	nc|ENSG00000152990|Q8IWK6-3|ADGRA3	nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2893981933594	2	452.252046	902.489538	-0.66236	-0.00029955	-2.5393	-0.0011484	-3.2016	-0.0014479	452.2506964267573	55.049	1.154	55.147	54.845	55.999	0.098015					52	31	2	0	0	0	0.024386	1	6097	6097		25.45	4.9683	1	395680			72143	6311	50590	50673	78760	78760					0.0343932665111879
SICQAVGII	9	Unmodified	_SICQAVGII_					0	0	0		nc|ENSG00000152990|Q8IWK6-3|ADGRA3;ENSG00000152990|ENST00000334304|ADGRA3	nc|ENSG00000152990|Q8IWK6-3|ADGRA3	nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.252046	902.489538	0.078137	3.5338E-05	-3.209	-0.0014513	-3.1309	-0.001416	452.25045107743904	55.315	0.88983	55.165	54.857	55.747	-0.15036	0.0025388	5.0746E-05	NaN	33.516	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414390			72144	6311	50590	50673							0.0343932665111879
SICTKDLK	8	Unmodified	_SICTKDLK_					0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.23883056640625	2	454.249503	906.484453	1.3186	0.00059898	-1.1996	-0.00054493	0.119	5.4057E-05	454.2488510798173	17.738	0.39901	17.584	17.458	17.857	-0.15403					13	7	3	0	0	0	0.027866	1	217	217		33.516	0	1	84337	+		72145	26016	50592	50674	78761	78761					0.027470227884805354
SIDAQDRVLLL	11	Unmodified	_SIDAQDRVLLL_					0	0	0		ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;nc|ENSG00000138835|P49796-5|RGS3	ENSG00000138835|ENST00000695401|RGS3	ENSG00000138835|ENST00000695401|RGS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	3	414.906594	1241.69795	-0.12171	-5.0498E-05	-2.1726	-0.00090141	-2.2943	-0.00095191	414.905759165599	21.171	1.9169	21.171	20.562	22.479	0					106	39	5	0	0	0	1.0123	1	617	617		34.087	2.0524	1	3796700			72146	5293	50593	50675	78762	78762					0.08677026769055374
SIDCKLTEDVL	11	Carbamidomethyl (C)	_SIDC(Carbamidomethyl (C))KLTEDVL_	SIDC(1)KLTEDVL		SIDC(47)KLTEDVL		0	1	0			REV__ENSG00000161040|ENST00000440067|FBXL13	REV__ENSG00000161040|ENST00000440067|FBXL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	431.5509948730469	3	431.551599	1291.63297	-0.69774	-0.00030111	-0.83653	-0.000361	-1.5343	-0.00066212	431.5512840732986	36.327	1.51	36.284	35.963	37.473	-0.042454					131	40	6	0	0	0	0.95317	1	2889	2889		47.228	7.3545	1	16854000	+		72147	25372	50594	50676	78763	78763	334				-0.0011833581913833768
SIDFNVKV	8	Unmodified	_SIDFNVKV_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27;KIF27|p.I538*|1|0.17|ENSG00000165115|chr9:83891492-83891492|T/-|frameshift_variant	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.2557373046875	2	461.255643	920.496732	0.086547	3.992E-05	-4.1016	-0.0018919	-4.0151	-0.001852	461.2553612220737	46.121	0.90889	46.024	45.564	46.473	-0.096649					78	24	5	0	0	0	0.65272	1	4427	4427		71.378	5.5747	1	2430200			72148	7365	50595	50677	78764	78764					0.0333038252319966
SIDKSVKV	8	Unmodified	_SIDKSVKV_					0	0	0			REV__ENST00000463491.1_1_20:35457204-35467793:-|nuORF	REV__ENST00000463491.1_1_20:35457204-35467793:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.2632751464844	2	438.263468	874.512382	-0.59613	-0.00026126	1.1413	0.00050021	0.54521	0.00023894	438.2637601024111	40.82	1.1707	40.684	40.381	41.552	-0.13554					61	30	3	0	0	0	1.0574	1	3553	3553		21.96	0	1	1804200	+		72149	24692	50596	50678	78765	78765					0.07010669040244011
SIDSLQLGY	9	Unmodified	_SIDSLQLGY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.2559814453125	2	498.25584	994.497126	0.11199	5.5802E-05	-0.036399	-1.8136E-05	0.075595	3.7666E-05	498.25579368921393	71.767	0.96747	71.492	71.188	72.155	-0.27509					43	23	3	0	0	0	0.013094	3	8375	8375;8386;8398		171.38	77.378	1	1798800			72150	3022	50597	50679	78766;78767;78768	78766					-0.0003424254761057455
SIDSLQLGY	9	Unmodified	_SIDSLQLGY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.25579833984375	2	498.25584	994.497126	0.231	0.0001151	-0.1491	-7.429E-05	0.081896	4.0805E-05	498.2557044380005	71.719	1.3967	71.457	71.159	72.556	-0.26199					79	33	3	0	0	0	0.015901	3	8390	8390;8401;8414		157.33	57.954	1	1969100			72151	3022	50597	50679	78769;78770;78771	78769					-0.0003424254761057455
SIDSLQLGY	9	Unmodified	_SIDSLQLGY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.25555419921875	2	498.25584	994.497126	0.033628	1.6755E-05	-0.057932	-2.8865E-05	-0.024304	-1.211E-05	498.2557275845266	71.619	1.3074	71.413	71.139	72.446	-0.20614					68	31	4	0	0	0	0.014013	3	8363	8351;8363;8376		166.78	76.006	1	1758400			72152	3022	50597	50679	78772;78773;78774	78773					-0.0003424254761057455
SIEADRIKKHL	11	Unmodified	_SIEADRIKKHL_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2571105957031	3	437.257738	1308.75138	0.28926	0.00012648	-1.1416	-0.00049919	-0.85237	-0.00037271	437.25724047360774	97.456	3.4342	97.295	96.333	99.767	-0.16106					230	81	4	0	0	0	1.0327	1	12066	12066		29.551	1.9068	1	1104700	+		72153	25755	50598	50680	78775	78775					0.10935824271564343
SIEDNSCPGP	10	Unmodified	_SIEDNSCPGP_					0	0	0		nc|ENSG00000170579|O14490-6|DLGAP1;nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-5|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-4|DLGAP1;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	nc|ENSG00000170579|O14490-6|DLGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7834777832031	2	509.710939	1017.40732	-0.029483	-1.5028E-05	2.6456	0.0013485	2.6162	0.0013335	509.7131395300995	49.828	0.11241	49.677	49.596	49.708	-0.1512					4	2	2	0	0	0	0.03519	1	5143	5143		29.15	8.6677	1	31617			72154	18507	50599	50681	78776	78776					-0.10068240218492974
SIEEQQRQLI	10	Unmodified	_SIEEQQRQLI_					0	0	0			REV__ENSG00000152705|ENST00000282611|CATSPER3	REV__ENSG00000152705|ENST00000282611|CATSPER3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.336181640625	2	622.335684	1242.65681	0.63113	0.00039278	0.72094	0.00044866	1.3521	0.00084144	622.3359921762496	110.24	0.80499	110.09	109.8	110.61	-0.14888					100	31	4	0	0	0	1.1179	1	13531	13531		19.997	0.89325	1	1535400	+		72155	24860	50600	50682	78777	78777					0.04519265729572908
SIEIDAKPL	9	Unmodified	_SIEIDAKPL_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7975769042969	2	493.281857	984.549162	-0.013675	-6.7456E-06	2.3692	0.0011687	2.3555	0.0011619	493.28218383283024	61.231	1.0493	61.302	60.871	61.92	0.071125					41	27	2	0	0	0	0.024436	1	6960	6960		23.042	1.0826	1	130930	+		72156	22797	50601	50683	78778	78778					0.05626920866131968
SIEINHKQV	9	Unmodified	_SIEINHKQV_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;ENST00000494190.1_1_2:100013292-100015462:+|nuORF	ENSG00000158417|ENST00000289371|EIF5B;ENST00000494190.1_1_2:100013292-100015462:+|nuORF	ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2706909179688	2	534.29583	1066.57711	-1.0448	-0.00055825	2.5267	0.00135	1.4819	0.00079177	534.2977106879852	46.389	0.33121	46.186	46.005	46.336	-0.20226					13	8	2	0	0	0	0.024457	1	4431	4431		29.15	1.2673	1	122320			72157	6667;15522	50602	50684	78779	78779					0.04648243846236255
SIEKIVEID	9	Unmodified	_SIEKIVEID_					0	0	0		ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF	ENSG00000143106|ENST00000271308|PSMA5	ENSG00000143106|ENST00000271308|PSMA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2791137695312	2	523.292422	1044.57029	-0.94991	-0.00049708	-0.011215	-5.8688E-06	-0.96112	-0.00050295	523.2925530233409	39.048	0.45837	39.048	38.761	39.219	0					15	12	2	0	0	0	0.024427	1	3298	3298		34.173	5.023	1	115230			72158	5609	50603	50685	78780	78780					0.04978886175013031
SIELDLNLL	9	Unmodified	_SIELDLNLL_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2;nc|ENSG00000169402|B2RC85-2|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.281005859375	2	515.294965	1028.57538	-0.94841	-0.00048871	0.74799	0.00038543	-0.20042	-0.00010328	515.2952464983642	83.456	0.72861	83.456	83.138	83.866	0					26	16	2	0	0	0	0.017891	1	10438	10438		108.09	5.3142	1	382280			72159	6446	50604	50686	78781	78781					0.062231900375991245
SIELDLNLL	9	Unmodified	_SIELDLNLL_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2;nc|ENSG00000169402|B2RC85-2|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.294965	1028.57538	-0.21317	-0.00010985	0.058566	3.0179E-05	-0.1546	-7.9667E-05	515.2949218008114	83.527	0.77171	83.437	83.172	83.943	-0.090454	-0.014912	-0.00060469	NaN	108.09	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400180			72160	6446	50604	50686							0.062231900375991245
SIELDLNLL	9	Unmodified	_SIELDLNLL_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2;nc|ENSG00000169402|B2RC85-2|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.294965	1028.57538	-1.2485	-0.00064333	1.2586	0.00064856	0.010137	5.2237E-06	515.2954187733076	83.436	0.85789	83.462	83.13	83.988	0.026558	0.010484	0.00063207	NaN	108.09	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443210			72161	6446	50604	50686							0.062231900375991245
SIEMDIGVGGV	11	Unmodified	_SIEMDIGVGGV_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.7666015625	2	538.768257	1075.52196	-1.4104	-0.0007599	-1.6974	-0.00091449	-3.1078	-0.0016744	538.7672703117345	83.277	0.89713	83.304	82.874	83.771	0.02655					47	20	3	0	0	0	0.22927	1	10320	10320		96.19	16.478	1	1790900	+		72162	20903	50605	50687	78782	78782					-0.012779307365462955
SIENEDPLN	9	Unmodified	_SIENEDPLN_					0	0	0			REV__ENSG00000186103|ENST00000334384|ARGFX	REV__ENSG00000186103|ENST00000334384|ARGFX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7907104492188	2	515.738011	1029.46147	-0.48416	-0.0002497	0.69679	0.00035936	0.21263	0.00010966	515.7384525570833	41.312	0.8844	41.335	40.97	41.854	0.023006					43	24	2	0	0	0	0.024397	1	3662	3662		39.253	0	1	244150	+		72163	27824	50606	50688	78783	78783					-0.052083247952623424
SIEPVGLQPI	10	Unmodified	_SIEPVGLQPI_					0	0	0		nc|ENSG00000127328|Q96QF0-8|RAB3IP;chr12:69779181-69784720|485|11.74|0.71|4.06|+|ENST00000551641|RAB3IP,RAB3IP;nc|ENSG00000127328|Q96QF0-3|RAB3IP;nc|ENSG00000127328|Q96QF0-4|RAB3IP;ENSG00000127328|ENST00000247833|RAB3IP;nc|ENSG00000127328|Q96QF0|RAB3IP	nc|ENSG00000127328|Q96QF0-8|RAB3IP	nc|ENSG00000127328|Q96QF0-8|RAB3IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.238037109375	2	526.802957	1051.59136	-0.98449	-0.00051863	0.80394	0.00042352	-0.18055	-9.5113E-05	526.8028652561659	56.18	0.32048	56.18	56.104	56.424	0					14	8	2	0	0	0	0.03519	1	6279	6279		68.787	8.6686	1	343210			72164	328	50607	50689	78784	78784					0.06762896274517516
SIESLRLF	8	Unmodified	_SIESLRLF_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2469482421875	2	482.776742	963.538931	-0.92304	-0.00044562	0.68254	0.00032951	-0.2405	-0.00011611	482.7771658386977	40.342	0.43638	40.365	40.126	40.562	0.023006					22	11	3	0	0	0	0.027866	1	3457	3457		31.955	0	1	231580			72165	2520	50608	50690	78785	78785					0.05570357931549097
SIEWQRGI	8	Unmodified	_SIEWQRGI_					0	0	0			REV__nc|ENSG00000108255|P05813-2|CRYBA1	REV__nc|ENSG00000108255|P05813-2|CRYBA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.7825012207031	2	494.764166	987.513779	-0.053784	-2.6611E-05	2.0594	0.0010189	2.0057	0.00099233	494.76484961835655	65.842	0.15478	65.872	65.774	65.929	0.030106					5	3	2	0	0	0	0.027866	1	7729	7729		35.618	0	1	35588	+		72166	21719	50609	50691	78786	78786					0.019523031290077597
SIFEFVHAL	9	Unmodified	_SIFEFVHAL_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.783935546875	2	531.784567	1061.55458	-0.084142	-4.4745E-05	-0.0035812	-1.9044E-06	-0.087723	-4.665E-05	531.7842918817906	83.126	0.59409	82.957	82.734	83.328	-0.16916					35	13	3	0	0	0	0.040175	2	10031	10031;10045		133.47	32.257	1	332530			72167	10173	50610	50692	78787;78788	78787					0.026266444486054752
SIFEGLLSGV	10	Unmodified	_SIFEGLLSGV_					0	0	0		ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.28173828125	2	511.281857	1020.54916	0.12263	6.2698E-05	0.72246	0.00036938	0.84509	0.00043208	511.2817965188904	95.793	1.3241	95.656	95.199	96.523	-0.13689					52	30	3	0	0	0	0.066926	2	11831	11817;11831		143.89	65.623	1	900220			72168	9801	50611	50693	78789;78790	78790					0.03970920866152028
SIFEGLLSGV	10	Unmodified	_SIFEGLLSGV_					0	0	0		ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.28204345703125	2	511.281857	1020.54916	0.54624	0.00027928	0.4283	0.00021898	0.97454	0.00049826	511.28153082070344	95.786	1.1493	95.664	95.247	96.396	-0.12251					56	26	4	0	0	0	0.05	2	11837	11837;11850		148.04	8.0031	1	1356500			72169	9801	50611	50693	78791;78792	78791					0.03970920866152028
SIFEGLLSGV	10	Unmodified	_SIFEGLLSGV_					0	0	0		ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2815246582031	2	511.281857	1020.54916	-0.3502	-0.00017905	1.96	0.0010021	1.6098	0.00082305	511.2819404755423	95.92	1.2417	95.763	95.269	96.511	-0.15646					70	28	4	0	0	0	0.26127	1	11823	11823		113.41	25.235	1	1018700			72170	9801	50611	50693	78793	78793					0.03970920866152028
SIFETSLNL	9	Unmodified	_SIFETSLNL_					0	0	0			REV__nc|ENSG00000206075|P36952-2|SERPINB5	REV__nc|ENSG00000206075|P36952-2|SERPINB5	MSMS	OPSCC_39_ClassI_Rep-2	2	512.2708129882812	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.08	1	107.07	106.57	107.57	-0.003479								0	0	0	0.5792	1	13706	13706		42.396	3.59	1		+		72171	37090	50612	50694	78794	78794					0.01806330486465413
SIFGQGFNF	9	Unmodified	_SIFGQGFNF_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.3002624511719	2	508.745442	1015.47633	-0.50521	-0.00025702	1.6356	0.00083209	1.1304	0.00057507	509.24883055460316	46.962	0.68005	46.768	46.512	47.192	-0.19387					24	18	2	0	0	0	0.024457	1	4613	4613		29.15	4.6304	1	226430	+		72172	25554	50613	50695	78795	78795					-0.03078788136622279
SIFIIMVW	8	Unmodified	_SIFIIMVW_					0	0	0		ENST00000491811.5_1_1:68608485-68620847:-|nuORF;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2814636230469	2	504.782982	1007.55141	-1.0373	-0.00052361	1.1955	0.00060346	0.15818	7.9847E-05	504.7835596182728	93.717	1.0386	93.577	93.092	94.13	-0.13995					45	23	3	0	0	0	0.027866	1	11543	11543		35.201	2.3883	1	425040			72173	3571	50614	50696	78796	78796					0.04793678070245733
SIFITNPVV	9	Unmodified	_SIFITNPVV_					0	0	0		ENST00000339901.8_1_9:91933491-91940532:+|nuORF	ENST00000339901.8_1_9:91933491-91940532:+|nuORF	ENST00000339901.8_1_9:91933491-91940532:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2872009277344	2	495.286943	988.559333	-0.1637	-8.1076E-05	0.43647	0.00021618	0.27278	0.0001351	495.2870535756769	67.459	1.0293	67.225	66.889	67.918	-0.23375					71	24	4	0	0	0	0.56934	1	7762	7762		54.776	5.3348	1	5194300			72174	12465	50615	50697	78797	78797					0.0645952859136969
SIFKPFIF	8	Unmodified	_SIFKPFIF_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.79150390625	2	499.789121	997.56369	-0.46747	-0.00023364	3.1924	0.0015955	2.7249	0.0013619	499.7906557352374	29.635	0.96934	29.485	29.129	30.099	-0.14952					45	22	4	0	0	0	0.96719	1	1809	1809		42.474	1.6963	1	4404700			72175	4993	50616	50698	78798	78798					0.06481037804940115
SIFKYLRYFTR	11	Unmodified	_SIFKYLRYFTR_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000465531.1_2_15:78276842-78294025:-|nuORF;ENST00000491479.1_1_15:78290504-78294097:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7716064453125	3	498.613633	1492.81907	-0.33606	-0.00016756	2.2016	0.0010977	1.8655	0.00093016	498.9505951760072	31.406	0.2263	31.165	30.995	31.221	-0.24109					10	5	2	0	0	0	0.024873	1	2062	2062		1.3219	0	1	49292			72176	7658	50617	50699	78799	78799					0.09237274202337176
SIFLASPLW	9	Unmodified	_SIFLASPLW_					0	0	0			REV__ENST00000333751.4_1_17:7255819-7255972:+|nuORF	REV__ENST00000333751.4_1_17:7255819-7255972:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3165893554688	2	517.289485	1032.56442	-0.55029	-0.00028466	-4.308	-0.0022285	-4.8583	-0.0025131	517.2869567458089	29.718	0.50579	29.546	29.07	29.575	-0.17258					17	11	2	0	0	0	0.024436	1	1793	1793		30.504	3.8107	1	62287	+		72177	30507	50618	50700	78800	78800					0.04943832454000585
SIFLASPLW	9	Unmodified	_SIFLASPLW_					0	0	0			REV__ENST00000333751.4_1_17:7255819-7255972:+|nuORF	REV__ENST00000333751.4_1_17:7255819-7255972:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.289485	1032.56442	-0.081337	-4.2075E-05	-4.0719	-0.0021063	-4.1532	-0.0021484	517.28673208818	29.661	0.37114	29.511	29.213	29.584	-0.14952	-0.017056	0.00010837	NaN	30.504	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55872	+		72178	30507	50618	50700							0.04943832454000585
SIFLITALSV	10	Unmodified	_SIFLITALSV_					0	0	0		ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	ENSG00000173080|ENST00000368318|RXFP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8092041015625	2	532.323525	1062.6325	0.23237	0.0001237	0.1808	9.6242E-05	0.41317	0.00021994	532.3234013459279	70.635	0.38953	70.635	70.397	70.787	0					15	8	2	0	0	0	0.03519	1	8559	8559		45.972	3.5761	1	1043000			72179	8338	50619	50701	78801	78801					0.10368657313961194
SIFLRISRW	9	Unmodified	_SIFLRISRW_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3423461914062	2	589.345658	1176.67676	-0.27155	-0.00016004	-4.1961	-0.002473	-4.4677	-0.002633	589.343051619512	103.85	0.53911	103.68	103.44	103.98	-0.16791					37	12	4	0	0	0	0.96906	1	12928	12928		26.693	1.2427	1	433340	+		72180	23052	50620	50702	78802	78802					0.0954910625082448
SIFLVADKV	9	Unmodified	_SIFLVADKV_					0	0	0		ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENST00000559111.1_1_15:99798356-99798647:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7689514160156	2	496.294768	990.574983	-0.8325	-0.00041317	2.625	0.0013028	1.7925	0.00088962	496.29624479111965	81.179	0.88333	81.049	80.619	81.502	-0.13075					33	21	3	0	0	0	0.024447	1	10109	10109		49.442	13.823	1	264390			72181	16770	50621	50703	78803	78803					0.0793181510841805
SIFPNDWVVD	10	Unmodified	_SIFPNDWVVD_					0	0	0			REV__nc|ENSG00000186038|A5X5Y0-2|HTR3E	REV__nc|ENSG00000186038|A5X5Y0-2|HTR3E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.8242797851562	2	596.287671	1190.56079	-0.29215	-0.00017421	0.064034	3.8182E-05	-0.22812	-0.00013602	596.287561994923	76.725	0.4274	76.457	76.296	76.723	-0.26806					14	9	2	0	0	0	0.03519	1	9130	9130		36.447	4.9169	1	133350	+		72182	37021	50622	50704	78804	78804					-0.026868821105381357
SIFRCMVFTLN	11	Unmodified	_SIFRCMVFTLN_					0	0	0		ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.266845703125	3	444.226393	1329.65735	-0.3543	-0.00015739	-4.2221	-0.0018756	-4.5764	-0.0020329	444.2244146797341	29.688	0.24165	29.691	29.591	29.833	0.0031357					7	5	2	0	0	0	0.024746	1	1819	1819		15.921	0	1	44728			72183	12707	50623	50705	78805	78805					0.005706458534177727
SIFTEHKKI	9	Unmodified	_SIFTEHKKI_					0	0	0		ENSG00000214652|ENST00000456806|ZNF727	ENSG00000214652|ENST00000456806|ZNF727	ENSG00000214652|ENST00000456806|ZNF727	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8165283203125	2	551.816399	1101.61824	-0.80995	-0.00044694	2.0264	0.0011182	1.2165	0.00067128	551.81745148556	93.291	0.71577	93.287	92.99	93.706	-0.0042038					43	16	4	0	0	0	0.56934	1	11808	11808		54.776	7.119	1	1115600			72184	10560	50624	50706	78806	78806					0.07150004885693306
SIFTRVTY	8	Unmodified	_SIFTRVTY_					0	0	0		nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2873840332031	2	493.768917	985.523281	-0.34484	-0.00017027	-3.5272	-0.0017416	-3.8721	-0.0019119	493.76730551277893	21.995	0.61898	21.92	21.651	22.27	-0.075296					15	12	2	0	0	0	0.027866	1	751	751		24.203	0	1	33008			72185	18797	50625	50707	78807	78807					0.0299407141451411
SIFVHLCF	8	Unmodified	_SIFVHLCF_					0	0	0			REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF	REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.292724609375	2	483.249306	964.484059	-0.75267	-0.00036373	4.4395	0.0021454	3.6868	0.0017817	483.2514296635247	58.124	0.43047	57.949	57.788	58.219	-0.1749					19	11	2	0	0	0	0.027866	1	6515	6515		28.254	0	1	884210	+		72186	33438	50626	50708	78808	78808					0.0003964785930747894
SIFYTNKTY	9	Unmodified	_SIFYTNKTY_					0	0	0			REV__ENST00000480128.1_1_12:46233959-46234175:+|nuORF	REV__ENST00000480128.1_1_12:46233959-46234175:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.26806640625	2	568.784764	1135.55498	0.11884	6.7593E-05	-2.1742	-0.0012366	-2.0553	-0.001169	569.2830785323788	46.249	0.66222	46.153	45.741	46.403	-0.096649					22	17	2	0	0	0	0.024017	1	4421	4421		85.161	33.825	1	176910	+		72187	33415	50627	50709	78809	78809					-0.0073798062219339045
SIGAETTSSVT	11	Unmodified	_SIGAETTSSVT_					0	0	0			REV__ENST00000483977.5_1_21:35497749-35514781:+|nuORF	REV__ENST00000483977.5_1_21:35497749-35514781:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7659301757812	2	526.758943	1051.50333	-1.5781	-0.00083128	2.909	0.0015323	1.3309	0.00070105	526.7596048130217	31.032	0.46249	31.032	30.838	31.3	0					15	10	2	0	0	0	0.024803	1	2040	2040		44.377	11.565	1	31411	+		72188	33526	50628	50710	78810	78810					-0.020357691067374617
SIGCTRCRY	9	2 Carbamidomethyl (C)	_SIGC(Carbamidomethyl (C))TRC(Carbamidomethyl (C))RY_	SIGC(1)TRC(1)RY		SIGC(82)TRC(82)RY		0	2	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.7693481445312	2	586.7686	1171.52265	-0.53998	-0.00031685	2.5081	0.0014717	1.9681	0.0011548	586.769981690546	79.567	0.91061	79.348	78.791	79.701	-0.21923					35	21	2	0	0	0	0.25032	1	9537	9537		82.305	8.05	1	2530000	+		72189	24328	50629	50711	78811	78811	318;319				-0.056254145684988544
SIGDPCRIIG	10	Unmodified	_SIGDPCRIIG_					0	0	0			REV__nc|ENSG00000148925|Q9BSF8-2|BTBD10	REV__nc|ENSG00000148925|Q9BSF8-2|BTBD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7091674804688	2	515.771134	1029.52771	-0.091857	-4.7377E-05	-3.8208	-0.0019707	-3.9127	-0.002018	515.7689391535055	30.184	0.63367	30.035	29.626	30.259	-0.14952					23	14	2	0	0	0	0.03519	1	1851	1851		20.947	5.3051	1	289870	+		72190	36773	50630	50712	78812	78812					0.014132125657624783
SIGERPVL	8	Unmodified	_SIGERPVL_					0	0	0		ENST00000479810.6_1_21:42692883-42718146:+|nuORF;ENSG00000183844|ENST00000357985|FAM3B;nc|ENSG00000183844|P58499-2|FAM3B	ENST00000479810.6_1_21:42692883-42718146:+|nuORF	ENST00000479810.6_1_21:42692883-42718146:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.7406005859375	2	435.75581	869.497067	-0.15274	-6.6557E-05	0.56257	0.00024514	0.40983	0.00017859	435.75611668586293	45.182	0.37551	45.182	44.934	45.31	0					16	10	2	0	0	0	0.027866	1	4355	4355		16.473	0	1	135740			72191	9285	50631	50713	78813	78813					0.05709802243052309
SIGHEQPGSPD	11	Unmodified	_SIGHEQPGSPD_					0	0	0		CEP350|p.Q1963H|1|0.18|ENSG00000135837|chr1:180078584-180078584|G/T|missense_variant	CEP350|p.Q1963H|1|0.18|ENSG00000135837|chr1:180078584-180078584|G/T|missense_variant	CEP350|p.Q1963H|1|0.18|ENSG00000135837|chr1:180078584-180078584|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2841796875	2	562.25436	1122.49417	-0.83577	-0.00046992	-1.3381	-0.00075235	-2.1739	-0.0012223	562.2535532245151	62.307	0.38264	62.13	61.883	62.265	-0.17782					17	9	3	0	0	0	0.024747	1	7018	7018		18.262	0	1	114330			72192	255	50632	50714	78814	78814					-0.062181176724152465
SIGIKKLL	8	Unmodified	_SIGIKKLL_					0	0	0			REV__nc|ENSG00000085982|Q9NVE5|USP40	REV__nc|ENSG00000085982|Q9NVE5|USP40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.522705078125	2	436.302396	870.590239	0.67498	0.0002945	-0.63051	-0.00027509	0.044475	1.9404E-05	436.3020075755964	47.876	0.48287	47.689	47.457	47.94	-0.18684					23	12	3	0	0	0	0.027866	1	4717	4717		26.796	7.4361	1	236180	+		72193	20762	50633	50715	78815	78815					0.14976726696284004
SIGKQILAP	9	Unmodified	_SIGKQILAP_					0	0	0		ENSG00000095485|ENST00000354105|CWF19L1;ENST00000482452.5_1_10:102003500-102020776:-|nuORF;nc|ENSG00000095485|Q69YN2-3|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7718200683594	2	463.78711	925.559667	0.0069955	3.2444E-06	0.077299	3.585E-05	0.084295	3.9095E-05	463.78696042609914	34.237	0.66301	34.232	33.988	34.651	-0.0045624					29	16	2	0	0	0	0.024436	1	2566	2566		23.042	0	1	261130			72194	2028	50634	50716	78816	78816					0.0939094831123839
SIGKQILAP	9	Unmodified	_SIGKQILAP_					0	0	0		ENSG00000095485|ENST00000354105|CWF19L1;ENST00000482452.5_1_10:102003500-102020776:-|nuORF;nc|ENSG00000095485|Q69YN2-3|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.77117919921875	2	463.78711	925.559667	-0.23698	-0.00010991	0.29526	0.00013694	0.058274	2.7027E-05	463.787057506324	34.311	0.63336	34.361	34.089	34.723	0.050255					27	15	2	0	0	0	0.024205	1	2534	2534		44.117	0	1	279500			72195	2028	50634	50716	78817	78817					0.0939094831123839
SIGLFEFPF	9	Unmodified	_SIGLFEFPF_					0	0	0			REV__ENST00000397278.7_1_22:36649096-36649195:+|nuORF	REV__ENST00000397278.7_1_22:36649096-36649195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7626953125	2	528.773668	1055.53278	-0.21405	-0.00011319	1.759	0.00093012	1.545	0.00081693	529.2763959483867	99.371	0.26507	99.382	99.268	99.533	0.010231					10	5	3	0	0	0	0.024506	1	12667	12667		38.806	5.2906	1	28679	+		72196	31767	50635	50717	78818	78818					0.007238397000492114
SIGLLRNL	8	Unmodified	_SIGLLRNL_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.27984619140625	2	443.279452	884.544351	0.054101	2.3982E-05	-0.12816	-5.681E-05	-0.074057	-3.2828E-05	443.27938040979535	55.029	1.8563	54.879	54.507	56.364	-0.15036					149	51	4	0	0	0	0.24001	1	6037	6037		133.81	4.13	1	12942000	+		72197	20028	50636	50718	78819	78819					0.09746081514037996
SIGLLRNL	8	Unmodified	_SIGLLRNL_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.27899169921875	2	443.279452	884.544351	-0.17339	-7.686E-05	0.026549	1.1769E-05	-0.14684	-6.5092E-05	443.27940623862924	54.999	2.3317	54.768	54.387	56.718	-0.23087					147	63	4	0	0	0	0.27973	1	5889	5889		120.62	3.7174	1	11278000	+		72198	20028	50636	50718	78820	78820					0.09746081514037996
SIGLLRNL	8	Unmodified	_SIGLLRNL_					0	0	0			REV__ENSG00000027001|ENST00000382172|MIPEP	REV__ENSG00000027001|ENST00000382172|MIPEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.2795715332031	2	443.279452	884.544351	0.55456	0.00024582	-0.64779	-0.00028715	-0.093233	-4.1328E-05	443.2791051929255	54.982	2.6583	54.776	54.395	57.053	-0.20613					184	71	5	0	0	0	0.27973	1	5836	5836		120.62	3.7174	1	11537000	+		72199	20028	50636	50718	78821	78821					0.09746081514037996
SIGLPAYQS	9	Unmodified	_SIGLPAYQS_					0	0	0			REV__ENST00000216416.8_1_14:54897113-54898903:-|nuORF	REV__ENST00000216416.8_1_14:54897113-54898903:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2447509765625	2	468.245275	934.475997	-0.18849	-8.8262E-05	-1.0016	-0.00046899	-1.1901	-0.00055725	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	0.97455	1	12913	12913		25.574	1.07	1	4433200	+		72200	29314	50637	50719	78822	78822					0.006137921435197313
SIGLVCISDD	10	Unmodified	_SIGLVCISDD_					0	0	0			REV__nc|ENSG00000067057|Q01813-2|PFKP	REV__nc|ENSG00000067057|Q01813-2|PFKP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7726745605469	2	511.247157	1020.47976	0.58304	0.00029808	-0.50247	-0.00025689	0.080572	4.1192E-05	511.7475619435686	84.49	0.72466	84.331	83.932	84.657	-0.15869					40	16	3	0	0	0	0.03519	1	10207	10207		34.173	17.699	1	72256	+		72201	20351	50638	50720	78823	78823					-0.029659061449365254
SIGMLGRGAAL	11	Unmodified	_SIGMLGRGAAL_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7646484375	2	523.294776	1044.575	-1.1068	-0.00057917	0.75343	0.00039427	-0.35335	-0.00018491	523.2950266279728	29.837	0.69255	29.915	29.607	30.3	0.078346					30	16	2	0	0	0	0.024803	1	1835	1835		44.377	0	1	628100	+		72202	36757	50639	50721	78824	78824					0.05449491836770903
SIGQPPPTSYY	11	Unmodified	_SIGQPPPTSYY_					0	0	0			REV__ZBTB22|p.R553Efs*160|1|0.4|ENSG00000236104|chr6:33315260-33315260|G/-|frameshift_variant	REV__ZBTB22|p.R553Efs*160|1|0.4|ENSG00000236104|chr6:33315260-33315260|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.8632507324219	3	403.864394	1208.57135	0.049494	1.9989E-05	-3.0572	-0.0012347	-3.0077	-0.0012147	403.86303347474654	27.759	0.94269	27.591	27.23	28.172	-0.16816					55	22	3	0	0	0	1.013	1	1548	1548		36.528	8.884	1	3934500	+		72203	37788	50640	50722	78825	78825					-0.024588994560645006
SIGRMGLLI	9	Unmodified	_SIGRMGLLI_					0	0	0			REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2816467285156	2	480.288963	958.563372	-0.14353	-6.8937E-05	-2.7053	-0.0012993	-2.8488	-0.0013683	480.28751864361897	46.433	0.70512	46.485	46.167	46.873	0.051395					47	19	3	0	0	0	0.024021	1	4501	4501		79.451	28.116	1	2057100	+		72204	31763	50641	50723	78826	78826					0.08243294813462398
SIGSARSTVF	10	Unmodified	_SIGSARSTVF_					0	0	0			REV__ENST00000481849.5_1_6:31321970-31322072:-|nuORF	REV__ENST00000481849.5_1_6:31321970-31322072:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7753295898438	2	512.774731	1023.53491	0.2004	0.00010276	-0.66703	-0.00034204	-0.46663	-0.00023928	512.7743851249649	47.836	1.2371	47.649	47.279	48.516	-0.18684					96	33	6	0	0	0	0.85955	1	4686	4686		56.721	7.2795	1	11250000	+		72205	31551	50642	50724	78827	78827					0.024082684378640806
SIGSCIVLPL	10	Unmodified	_SIGSCIVLPL_					0	0	0			REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	REV__ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2896423339844	2	501.288628	1000.5627	1.1341	0.00056849	2.4409	0.0012236	3.5749	0.0017921	501.2895170379871	98.251	1.1783	98.127	97.812	98.99	-0.12413					77	28	4	0	0	0	1.0665	1	12204	12204		37.159	0	1	1580300	+		72206	19961	50643	50725	78828	78828					0.06244455373735036
SIGSSYSGSLV	11	Unmodified	_SIGSSYSGSLV_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7711181640625	2	528.764029	1055.5135	-0.64291	-0.00033995	-0.78312	-0.00041409	-1.426	-0.00075404	528.7639322717152	47.787	0.74651	47.846	47.585	48.331	0.059097					30	21	2	0	0	0	0.024732	1	4776	4776		19.104	4.2386	1	604510	+		72207	22985	50644	50726	78829	78829					-0.012031613815224773
SIGVIKPAI	9	Unmodified	_SIGVIKPAI_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.27447509765625	2	449.292028	896.569503	0.21965	9.8689E-05	-0.10062	-4.5206E-05	0.11904	5.3483E-05	449.291839187849	57.341	1.0663	57.139	56.557	57.624	-0.20209					62	28	3	0	0	0	0.020546	1	6193	6193		108.09	0	1	1508500			72208	5301	50645	50727	78830	78830					0.11708136316599393
SIGVIKPAI	9	Unmodified	_SIGVIKPAI_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.292028	896.569503	0.046179	2.0748E-05	0.17102	7.6836E-05	0.21719	9.7584E-05	449.29194742321926	57.383	0.30934	57.383	57.187	57.496	0	0.11972	-0.00010403	NaN	108.09	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202620			72209	5301	50645	50727							0.11708136316599393
SIGVIKPAI	9	Unmodified	_SIGVIKPAI_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	449.292028	896.569503	0.58992	0.00026505	-0.39862	-0.0001791	0.1913	8.5951E-05	449.2915994036471	57.572	0.34231	57.397	57.229	57.571	-0.1749	0.13383	-0.00061589	NaN	108.09	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198190			72210	5301	50645	50727							0.11708136316599393
SIGVIKPAI	9	Unmodified	_SIGVIKPAI_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	449.292028	896.569503	-0.32391	-0.00014553	0.5262	0.00023642	0.20229	9.0888E-05	449.29208468620465	57.279	0.29869	57.374	57.204	57.503	0.095306	0.11107	0.00021514	NaN	108.09	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273460			72211	5301	50645	50727							0.11708136316599393
SIGWGGRDDP	10	Unmodified	_SIGWGGRDDP_					0	0	0			REV__ENSG00000113575|ENST00000481195|PPP2CA	REV__ENSG00000113575|ENST00000481195|PPP2CA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7725219726562	2	530.246338	1058.47812	-1.4161	-0.00075089	1.1476	0.00060851	-0.26853	-0.00014239	530.2469190184486	29.081	0.52142	28.835	28.578	29.099	-0.24524					20	11	2	0	0	0	0.03519	1	1717	1717		39.253	13.679	1	222290	+		72212	21456	50646	50728	78831	78831					-0.04877779118669423
SIGYIADRF	9	Unmodified	_SIGYIADRF_					0	0	0		nc|ENSG00000112499|O15244-3|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2537231445312	2	521.271824	1040.5291	-1.367	-0.00071256	-3.037	-0.0015831	-4.404	-0.0022957	521.2701712407404	28.505	0.82306	28.26	27.842	28.665	-0.24524					27	19	2	0	0	0	0.024457	1	1726	1726		29.15	0	1	300930			72213	3216	50647	50729	78832	78832					0.010451699261693648
SIGYIADRF	9	Unmodified	_SIGYIADRF_					0	0	0		nc|ENSG00000112499|O15244-3|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.271824	1040.5291	-0.38601	-0.00020121	-3.9256	-0.0020463	-4.3117	-0.0022475	521.2697866479141	28.365	0.45738	28.196	27.966	28.424	-0.16897	-0.027787	-0.00028134	NaN	51.335	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298810			72214	3216	50647	50729							0.010451699261693648
SIGYIADRF	9	Unmodified	_SIGYIADRF_					0	0	0		nc|ENSG00000112499|O15244-3|SLC22A2;nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	nc|ENSG00000112499|O15244-3|SLC22A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.271824	1040.5291	-0.36145	-0.00018841	-3.9469	-0.0020574	-4.3084	-0.0022458	521.2696752583075	28.366	0.52653	28.214	28	28.527	-0.15195	-0.0090568	-0.00030351	NaN	51.335	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323680			72215	3216	50647	50729							0.010451699261693648
SIGYSGPSQF	10	Unmodified	_SIGYSGPSQF_					0	0	0			REV__ENST00000434410.5_2_3:50617853-50617988:+|nuORF	REV__ENST00000434410.5_2_3:50617853-50617988:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2537231445312	2	521.745639	1041.47673	-1.5138	-0.00078983	-2.7954	-0.0014585	-4.3093	-0.0022483	521.7440807019361	28.599	0.71904	28.354	28.162	28.881	-0.24524					36	16	4	0	0	0	0.03519	1	1726	1726		31.53	7.3271	1	307720	+		72216	32421	50648	50730	78833	78833					-0.04235413207425154
SIHAQLVR	8	Unmodified	_SIHAQLVR_					0	0	0			REV__ENSG00000135443|ENST00000257901|KRT85	REV__ENSG00000135443|ENST00000257901|KRT85	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2743225097656	2	462.274701	922.534849	-1.0297	-0.00047602	0.56759	0.00026238	-0.46213	-0.00021363	462.2749027572938	21.651	1.1072	21.438	21.167	22.275	-0.2128					55	22	4	0	0	0	0.71833	2	681	670;681		65.803	2.4969	1	1444500	+	+	72217	19563	50649	50731	78834;78835	78835					0.07048313228528968
SIHFIDMIS	9	Unmodified	_SIHFIDMIS_					0	0	0		ENST00000463753.5_1_3:99396828-99397035:+|nuORF	ENST00000463753.5_1_3:99396828-99397035:+|nuORF	ENST00000463753.5_1_3:99396828-99397035:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7657470703125	2	531.76806	1061.52157	-0.85247	-0.00045331	-3.4843	-0.0018528	-4.3367	-0.0023061	531.7661621990089	40.484	1.4012	40.507	40.162	41.564	0.023006					98	39	4	0	0	0	0.22754	1	3490	3490		85.359	10.316	1	12443000			72218	14741	50650	50732	78836	78836					-0.006733056657594716
SIHFPIRGN	9	Unmodified	_SIHFPIRGN_					0	0	0		ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7838134765625	2	520.785433	1039.55631	-0.49325	-0.00025688	-2.274	-0.0011843	-2.7672	-0.0014411	520.7844580896829	104	1.478	104	103.67	105.15	0					66	41	3	0	0	0	0.83071	2	13348	13348;13360		37.159	2.3535	1	240100			72219	10839	50651	50733	78837;78838	78837					0.0381169825723191
SIHGKNLV	8	Unmodified	_SIHGKNLV_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2563171386719	2	434.255977	866.497401	-0.14013	-6.0851E-05	-0.028533	-1.2391E-05	-0.16866	-7.3241E-05	434.25688454950097	103.48	0.58494	103.35	103.21	103.79	-0.12783					21	13	2	0	0	0	0.027866	1	12932	12932		18.324	0	1	191390			72220	9740	50652	50734	78839	78839					0.05881221962897598
SIHHFVKGCV	10	Unmodified	_SIHHFVKGCV_					0	0	0			REV__ENSG00000167766|ENST00000597597|ZNF83	REV__ENSG00000167766|ENST00000597597|ZNF83	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.2767333984375	2	563.794943	1125.57533	-0.76938	-0.00043377	-4.0541	-0.0022857	-4.8235	-0.0027195	563.7926006416394	81.328	0.65388	81.328	81.057	81.711	0					32	15	3	0	0	0	0.03519	1	10162	10162		42.396	20.436	1	428480	+		72221	26192	50653	50735	78840	78840					0.017569115566402616
SIHLFIDPGG	10	Unmodified	_SIHLFIDPGG_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.76611328125	2	528.279649	1054.54475	-0.29043	-0.00015343	0.67479	0.00035648	0.38436	0.00020305	528.2792775261087	56.606	0.4588	56.704	56.359	56.818	0.097893					18	12	2	0	0	0	0.03519	1	6260	6260		29.15	1.2673	1	176240	+		72222	24880	50654	50736	78841	78841					0.0196545644323578
SIHLFIDPGG	10	Unmodified	_SIHLFIDPGG_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.279649	1054.54475	-0.96805	-0.0005114	0.50877	0.00026877	-0.45928	-0.00024263	528.2784667846165	56.879	0.6488	56.879	56.424	57.073	0	0.08783	-0.000105	NaN	44.117	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169200	+		72223	24880	50654	50736							0.0196545644323578
SIHNHHLY	8	Unmodified	_SIHNHHLY_					0	0	0			REV__LRRTM3|p.D93H|1|0.25|ENSG00000198739|chr10:66927193-66927193|G/C|missense_variant	REV__LRRTM3|p.D93H|1|0.25|ENSG00000198739|chr10:66927193-66927193|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.75311279296875	2	510.754133	1019.49371	-0.35905	-0.00018339	-1.0791	-0.00055118	-1.4382	-0.00073457	510.7533838353162	45.912	0.62827	45.651	45.416	46.044	-0.26118					49	16	4	0	0	0	0.75307	1	4378	4378		62.978	0	1	4145200	+		72224	36333	50655	50737	78842	78842					-0.015254478109568481
SIHPASLPSD	10	Unmodified	_SIHPASLPSD_					0	0	0			REV__ENST00000373191.8_1_1:36396741-36411362:+|nuORF	REV__ENST00000373191.8_1_1:36396741-36411362:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.3059387207031	2	512.258914	1022.50327	0.4301	0.00022032	-1.336	-0.00068439	-0.90593	-0.00046407	512.7598433396387	65.935	0.42225	65.935	65.643	66.065	0					18	10	2	0	0	0	0.03519	1	7848	7848		68.787	4.5796	1	130050	+		72225	31241	50656	50738	78843	78843					-0.0070772431608929764
SIHPIKTFL	9	Unmodified	_SIHPIKTFL_					0	0	0			REV__ENST00000521425.5_2_8:71486761-71486887:-|nuORF	REV__ENST00000521425.5_2_8:71486761-71486887:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2384033203125	2	528.316035	1054.61752	-0.064759	-3.4213E-05	-2.7464	-0.001451	-2.8111	-0.0014852	528.3144787379135	67.947	0.52911	67.713	67.513	68.042	-0.23375					14	12	2	0	0	0	0.023635	1	7816	7816		47.657	0	1	73108	+		72226	34316	50657	50739	78844	78844					0.09239210236660256
SIHYFPRPLI	10	Unmodified	_SIHYFPRPLI_					0	0	0			REV__sp|P0CK58|BALF1_EBVB9ApoptosisregulatorBALF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF1PE=1SV=1	REV__sp|P0CK58|BALF1_EBVB9ApoptosisregulatorBALF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BALF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.9057312011719	3	414.904636	1241.69208	-0.045225	-1.8764E-05	2.454	0.0010182	2.4088	0.00099942	414.9057411520974	21.247	1.3484	21.157	20.766	22.115	-0.090094					99	27	6	0	0	0	1.0816	1	610	610		35.152	1.0655	1	3818100	+		72227	37560	50658	50740	78845	78845					0.08089973048049615
SIIDKLVNI	9	Unmodified	_SIIDKLVNI_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.81304931640625	2	507.813325	1013.6121	-0.034693	-1.7618E-05	0.14577	7.4023E-05	0.11108	5.6406E-05	507.81314592838766	76.696	1.0627	76.696	76.189	77.252	0					36	25	3	0	0	0	0.2101	2	9456	9456;9469		87.696	9.5779	1	1055100			72228	1124	50659	50741	78846;78847	78846					0.10583486654184071
SIIDKLVNI	9	Unmodified	_SIIDKLVNI_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.813720703125	2	507.813325	1013.6121	-0.51604	-0.00026205	0.45956	0.00023337	-0.056487	-2.8685E-05	507.8134463146088	76.892	0.69336	76.664	76.16	76.853	-0.22843					30	16	3	0	0	0	0.26413	1	9456	9456		80.455	3.137	1	1037600			72229	1124	50659	50741	78848	78848					0.10583486654184071
SIIDKLVNI	9	Unmodified	_SIIDKLVNI_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.8134460449219	2	507.813325	1013.6121	0.18622	9.4567E-05	-0.031777	-1.6137E-05	0.15445	7.8431E-05	507.8131164092651	76.744	0.7337	76.757	76.287	77.021	0.013504					30	17	3	0	0	0	0.54416	1	9393	9393		56.434	10.462	1	1074600			72230	1124	50659	50741	78849	78849					0.10583486654184071
SIIDKLVNI	9	Unmodified	_SIIDKLVNI_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.813325	1013.6121	0.34343	0.0001744	-0.41696	-0.00021174	-0.073532	-3.7341E-05	507.8130281116662	76.938	0.38298	76.67	76.424	76.807	-0.26806	-0.0095493	-0.00054907	NaN	87.696	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106850			72231	1124	50659	50741							0.10583486654184071
SIIDKLVNI	9	Unmodified	_SIIDKLVNI_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.813325	1013.6121	-0.412	-0.00020922	0.38139	0.00019368	-0.030606	-1.5542E-05	507.8133267899176	76.781	0.50668	76.612	76.352	76.859	-0.16854	-0.067848	0.00026176	NaN	87.696	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105280			72232	1124	50659	50741							0.10583486654184071
SIIDMAFCSI	10	Oxidation (M)	_SIIDM(Oxidation (M))AFCSI_		SIIDM(1)AFCSI		SIIDM(93)AFCSI	0	0	1		ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.259521484375	2	558.25921	1114.50387	0.31106	0.00017365	-0.12019	-6.7094E-05	0.19087	0.00010656	558.2590666489383	85.164	1.607	84.969	84.595	86.202	-0.19508					116	37	5	0	0	0	0.45367	1	10322	10322		93.195	13.483	1	7435900			72233	9169	50660	50742	78850	78850		384			-0.0488038898290597
SIIDMAFCSI	10	Oxidation (M)	_SIIDM(Oxidation (M))AFCSI_		SIIDM(1)AFCSI		SIIDM(80)AFCSI	0	0	1		ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	ENSG00000182854|ENST00000332238|OR4F15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2594604492188	2	558.25921	1114.50387	0.76787	0.00042867	-0.75166	-0.00041962	0.016209	9.0486E-06	558.2587410751472	85.142	1.9027	84.992	84.497	86.4	-0.14967					131	44	5	0	0	0	0.57594	2	10307	10307;10356		79.713	11.759	1	7922500			72234	9169	50660	50742	78851;78852	78851		384			-0.0488038898290597
SIIDTELKV	9	Unmodified	_SIIDTELKV_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13;ENST00000512024.5_1_5:893053-908577:+|nuORF;nc|ENSG00000071539|Q15645-2|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.2950134277344	2	509.294965	1016.57538	0.5096	0.00025954	-0.89166	-0.00045412	-0.38205	-0.00019458	509.2943450607247	63.543	1.0075	63.543	63.23	64.238	0					69	27	4	0	0	0	0.03201	2	7424	7424;7441		139.97	52.216	1	6236300			72235	1454	50661	50743	78853;78854	78853					0.06775190037603807
SIIDTELKV	9	Unmodified	_SIIDTELKV_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13;ENST00000512024.5_1_5:893053-908577:+|nuORF;nc|ENSG00000071539|Q15645-2|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.2952880859375	2	509.294965	1016.57538	0.0011598	5.9069E-07	-0.4057	-0.00020662	-0.40454	-0.00020603	509.29463557339443	63.818	0.97577	63.566	63.228	64.204	-0.25141					77	26	4	0	0	0	0.053401	3	7431	7431;7439;7451		127.46	48.011	1	7875000			72236	1454	50661	50743	78855;78856;78857	78855					0.06775190037603807
SIIDTELKV	9	Unmodified	_SIIDTELKV_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13;ENST00000512024.5_1_5:893053-908577:+|nuORF;nc|ENSG00000071539|Q15645-2|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.2950439453125	2	509.294965	1016.57538	1.4237	0.00072508	-1.744	-0.00088822	-0.32032	-0.00016314	509.2939627518689	63.522	1.152	63.576	63.267	64.419	0.054104					80	31	4	0	0	0	0.053401	2	7351	7341;7351		127.46	45.221	1	8241200			72237	1454	50661	50743	78858;78859	78859					0.06775190037603807
SIIEKGEEHC	10	Carbamidomethyl (C)	_SIIEKGEEHC(Carbamidomethyl (C))_	SIIEKGEEHC(1)		SIIEKGEEHC(120)		0	1	0		ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	601.2774658203125	2	601.27952	1200.54449	-1.0755	-0.0006467	-2.3205	-0.0013953	-3.3961	-0.002042	601.2781471946339	84.567	1.1593	84.567	84.171	85.331	0					89	27	5	0	0	0	0.21865	1	10587	10587		118.74	6.3322	1	4178400			72238	15608	50662	50744	78860	78860	207				-0.04776331338939599
SIIEKGEEHC	10	Carbamidomethyl (C)	_SIIEKGEEHC(Carbamidomethyl (C))_	SIIEKGEEHC(1)		SIIEKGEEHC(120)		0	1	0		ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	601.2772827148438	2	601.27952	1200.54449	-1.2152	-0.00073065	-1.9443	-0.0011691	-3.1594	-0.0018997	601.2782284134558	84.521	1.1635	84.448	84.134	85.298	-0.072769					84	27	5	0	0	0	0.21865	2	10542	10542;10565		118.74	6.3322	1	3925100			72239	15608	50662	50744	78861;78862	78861	207				-0.04776331338939599
SIIEKGEEHC	10	Carbamidomethyl (C)	_SIIEKGEEHC(Carbamidomethyl (C))_	SIIEKGEEHC(1)		SIIEKGEEHC(120)		0	1	0		ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	601.2778930664062	2	601.27952	1200.54449	-1.6033	-0.00096404	-1.3819	-0.00083091	-2.9852	-0.0017949	601.2784880173257	84.436	1.2487	84.463	84.162	85.411	0.026558					76	29	4	0	0	0	0.21865	1	10490	10490		118.74	6.3322	1	3472300			72240	15608	50662	50744	78863	78863	207				-0.04776331338939599
SIIEKGEEHC	10	Carbamidomethyl (C)	_SIIEKGEEHC(Carbamidomethyl (C))_	SIIEKGEEHC(1)		SIIEKGEEHC(120)		0	1	0		ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	ENST00000497997.1_1_3:119393998-119394220:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.27734375	2	601.27952	1200.54449	0.17137	0.00010304	-3.0568	-0.001838	-2.8855	-0.001735	601.2775033006799	84.504	0.72092	84.301	84.038	84.759	-0.20329					44	16	3	0	0	0	0.21865	1	10216	10216		118.74	6.3322	1	2071600			72241	15608	50662	50744	78864	78864	207				-0.04776331338939599
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3136291503906	2	500.313492	998.612431	-0.090474	-4.5266E-05	-0.4003	-0.00020028	-0.49077	-0.00024554	500.31332521540634	76.17	3.2658	76.17	75.769	79.035	0					276	79	5	0	0	0	0.041068	17	9388	9364;9376;9388;9400;9413;9424;9449;9460;9472;9484;9495;9508;9531;9544;9570;9581;9594		132.76	47.597	1	55910000			72242	8287	50663	50745	78865;78866;78867;78868;78869;78870;78871;78872;78873;78874;78875;78876;78877;78878;78879;78880;78881	78867					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3133850097656	2	500.313492	998.612431	-0.39709	-0.00019867	-0.051583	-2.5808E-05	-0.44867	-0.00022448	500.3135104911785	76.329	3.772	76.101	75.528	79.3	-0.22843					266	92	6	0	0	0	0.030064	18	9551	9345;9357;9369;9381;9393;9441;9453;9465;9477;9501;9514;9528;9539;9551;9562;9574;9588;9601		141.52	39.92	1	57941000			72243	8287	50663	50745	78882;78883;78884;78885;78886;78887;78888;78889;78890;78891;78892;78893;78894;78895;78896;78897;78898;78899	78895					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3133544921875	2	500.313492	998.612431	0.31324	0.00015672	-0.82928	-0.0004149	-0.51604	-0.00025818	500.3131305903417	76.175	3.4375	76.187	75.788	79.226	0.011642					264	83	5	0	0	0	0.048057	17	9305	9282;9294;9305;9317;9329;9341;9353;9377;9389;9401;9413;9425;9437;9448;9462;9474;9486		129.42	44.26	1	55383000			72244	8287	50663	50745	78900;78901;78902;78903;78904;78905;78906;78907;78908;78909;78910;78911;78912;78913;78914;78915;78916	78902					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.3134460449219	2	500.313492	998.612431	-0.23354	-0.00011684	-0.31312	-0.00015666	-0.54666	-0.0002735	500.3134040007228	76.297	1.3954	76.029	75.626	77.022	-0.26806					126	34	6	0	0	0	0.030064	7	9043	9020;9043;9055;9067;9079;9123;9137		141.52	48.325	1	46142000			72245	8287	50663	50745	78917;78918;78919;78920;78921;78922;78923	78918					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.3132019042969	2	500.313492	998.612431	-0.086198	-4.3126E-05	-0.4775	-0.0002389	-0.56369	-0.00028202	500.3133262987503	76.254	1.3695	76.002	75.603	76.972	-0.25162					118	33	6	0	0	0	0.030064	6	9053	9030;9041;9053;9065;9077;9089		141.52	48.325	1	46244000			72246	8287	50663	50745	78924;78925;78926;78927;78928;78929	78926					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.3136901855469	2	500.313492	998.612431	-0.27481	-0.00013749	-0.20011	-0.00010012	-0.47492	-0.00023761	500.3134558560037	76.002	1.4656	75.826	75.507	76.973	-0.17545					129	35	6	0	0	0	0.016542	7	8996	8986;8996;9008;9020;9032;9092;9108		154.12	57.928	1	45674000			72247	8287	50663	50745	78930;78931;78932;78933;78934;78935;78936	78931					0.11306906374034043
SIIGSVLYDG	10	Unmodified	_SIIGSVLYDG_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2706909179688	2	512.27149	1022.52843	-0.24649	-0.00012627	-0.34477	-0.00017662	-0.59126	-0.00030289	512.2709906728722	104.04	1.3639	104.04	103.63	105	0					74	36	3	0	0	0	1.0393	1	13366	13366		40.778	0	1	306250			72248	7855	50664	50746	78937	78937					0.01806330486465413
SIIKGAKNTF	10	Unmodified	_SIIKGAKNTF_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8162841796875	2	539.816399	1077.61824	-0.74583	-0.00040261	-0.25248	-0.00013629	-0.99831	-0.0005389	539.8162189750537	43.594	0.80724	43.482	43.145	43.953	-0.11253					51	21	4	0	0	0	0.67616	1	4010	4010		68.846	1.3525	1	2147800	+		72249	27373	50665	50747	78938	78938					0.0825400488570267
SIIKKLAAL	9	Unmodified	_SIIKKLAAL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	478.828778	955.643003	1.3773	0.00065948	-1.646	-0.00078816	-0.26875	-0.00012868	478.8279161358055	51.354	0.27591	51.242	51.051	51.327	-0.11163					8	6	2	0	0	0	0.024354	1	5270	5270		47.916	7.1374	1	63539			72250	3841	50666	50748	78939	78939					0.16340684759086344
SIILVRSLP	9	Unmodified	_SIILVRSLP_					0	0	0		ENST00000538576.5_1_1:113460093-113460168:-|nuORF	ENST00000538576.5_1_1:113460093-113460168:-|nuORF	ENST00000538576.5_1_1:113460093-113460168:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3128967285156	2	499.32386	996.633166	-0.32988	-0.00016472	0.51494	0.00025712	0.18506	9.2404E-05	499.32405481101443	75.973	1.1005	75.973	75.659	76.759	0					54	27	2	0	0	0	0.023837	1	9353	9353		84.916	10.66	1	6794000			72251	16391	50667	50749	78940	78940					0.1347149675369792
SIIPIVKRES	10	Unmodified	_SIIPIVKRES_					0	0	0			REV__nc|ENSG00000137942|Q5T0N5-3|FNBP1L	REV__nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.28662109375	2	571.350606	1140.68666	-0.058394	-3.3364E-05	-1.9635	-0.0011219	-2.0219	-0.0011552	571.3503188564836	52.658	0.20164	52.469	52.389	52.591	-0.18982					6	4	2	0	0	0	0.03519	1	5475	5475		32.812	8.5806	1	60068	+		72252	23797	50668	50750	78941	78941					0.12194249465574103
SIIQRLLEV	9	Unmodified	_SIIQRLLEV_					0	0	0		nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.8322143554688	2	535.832049	1069.64954	-0.35094	-0.00018805	0.59483	0.00031873	0.24388	0.00013068	535.832225598291	78.508	0.68867	78.253	77.955	78.644	-0.25471					43	15	4	0	0	0	0.14181	1	9358	9358		101.25	10.883	1	1018100			72253	9536	50669	50751	78942	78942					0.11750577919792704
SIIQRLLEV	9	Unmodified	_SIIQRLLEV_					0	0	0		nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.832275390625	2	535.832049	1069.64954	-0.062289	-3.3376E-05	0.36125	0.00019357	0.29896	0.00016019	535.8320797485077	78.411	0.77369	78.179	77.92	78.694	-0.23141					44	17	3	0	0	0	0.14181	1	9367	9367		101.25	16.092	1	857100			72254	9536	50669	50751	78943	78943					0.11750577919792704
SIISAHMLL	9	Oxidation (M)	_SIISAHM(Oxidation (M))LL_		SIISAHM(1)LL		SIISAHM(74)LL	0	0	1			REV__NDST4|p.P618A|1|0.07|ENSG00000138653|chr4:114848303-114848303|G/C|missense_variant	REV__NDST4|p.P618A|1|0.07|ENSG00000138653|chr4:114848303-114848303|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7764587402344	2	500.778428	999.542302	-0.17998	-9.0132E-05	-3.0603	-0.0015325	-3.2403	-0.0016226	500.77677917196604	79.616	0.90974	79.635	79.192	80.101	0.018669					33	21	2	0	0	0	0.31247	1	9823	9823		73.975	11.867	1	1266000	+		72255	37271	50670	50752	78944	78944		982			0.04251284713939185
SIISFHVLN	9	Unmodified	_SIISFHVLN_					0	0	0			REV__AGL|p.P37Qfs*71|1|0.15|ENSG00000162688|chr1:99861528-99861528|C/-|frameshift_variant	REV__AGL|p.P37Qfs*71|1|0.15|ENSG00000162688|chr1:99861528-99861528|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7711791992188	2	515.290017	1028.56548	-0.1102	-5.6783E-05	3.0946	0.0015946	2.9844	0.0015378	515.2914486591854	43.253	0.83435	43.284	42.83	43.664	0.030827					29	22	2	0	0	0	0.024294	1	4007	4007		37.159	6.6555	1	470110	+		72256	19085	50671	50753	78945	78945					0.05234046822920391
SIISNEVLL	9	Unmodified	_SIISNEVLL_					0	0	0		ENST00000553204.5_1_12:49497576-49504308:-|nuORF;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.80596923828125	2	494.289682	986.564812	-0.058593	-2.8962E-05	-0.10089	-4.9867E-05	-0.15948	-7.8829E-05	494.289431045208	81.854	0.94905	81.854	81.63	82.579	0					52	22	3	0	0	0	0.024209	1	10205	10205		56.721	1.9447	1	723180			72257	5352	50672	50754	78946	78946					0.07099207383191697
SIISNEVLL	9	Unmodified	_SIISNEVLL_					0	0	0		ENST00000553204.5_1_12:49497576-49504308:-|nuORF;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.289682	986.564812	0.11158	5.5151E-05	-0.51053	-0.00025235	-0.39895	-0.0001972	494.2893423112251	81.949	1.0325	81.721	81.437	82.47	-0.2289	-0.095484	-0.0002447	NaN	56.721	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385510			72258	5352	50672	50754							0.07099207383191697
SIISNEVLL	9	Unmodified	_SIISNEVLL_					0	0	0		ENST00000553204.5_1_12:49497576-49504308:-|nuORF;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.289682	986.564812	0.21015	0.00010387	-0.58302	-0.00028818	-0.37287	-0.00018431	494.2892614236844	81.949	0.72683	81.756	81.505	82.231	-0.19334	-0.059905	-0.00031636	NaN	56.721	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341090			72259	5352	50672	50754							0.07099207383191697
SIISNEVLL	9	Unmodified	_SIISNEVLL_					0	0	0		ENST00000553204.5_1_12:49497576-49504308:-|nuORF;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	ENST00000553204.5_1_12:49497576-49504308:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.289682	986.564812	-0.74104	-0.00036629	0.29828	0.00014744	-0.44276	-0.00021885	494.2897085295213	81.905	0.73051	81.763	81.483	82.214	-0.14245	-0.053398	0.00055487	NaN	56.721	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253040			72260	5352	50672	50754							0.07099207383191697
SIISNLITV	9	Unmodified	_SIISNLITV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.29254150390625	2	480.292225	958.569897	0.82123	0.00039443	-1.0139	-0.00048695	-0.19263	-9.2517E-05	480.2916026421466	88.78	0.71592	88.78	88.47	89.186	0					41	16	4	0	0	0	0.014918	4	11205	11184;11194;11205;11220		209.84	33.753	1	1246100			72261	4666	50673	50755	78947;78948;78949;78950	78949					0.0889551124580521
SIISNLITV	9	Unmodified	_SIISNLITV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2926025390625	2	480.292225	958.569897	0.8596	0.00041286	-0.93115	-0.00044723	-0.071556	-3.4368E-05	480.2916012342844	88.737	0.71818	88.71	88.433	89.151	-0.027657					40	16	3	0	0	0	0.01388	3	11160	11148;11160;11172		180.87	31.883	1	1181600			72262	4666	50673	50755	78951;78952;78953	78952					0.0889551124580521
SIISNLITV	9	Unmodified	_SIISNLITV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2927551269531	2	480.292225	958.569897	0.36531	0.00017545	-0.39856	-0.00019142	-0.033252	-1.597E-05	480.29185265146816	88.87	0.68068	88.886	88.494	89.174	0.015907					42	15	4	0	0	0	0.014918	3	11125	11114;11125;11137		162.25	14.21	1	1158900			72263	4666	50673	50755	78954;78955;78956	78955					0.0889551124580521
SIISNLITV	9	Unmodified	_SIISNLITV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.2933654785156	2	480.292225	958.569897	-0.01812	-8.7027E-06	-0.026301	-1.2632E-05	-0.044421	-2.1335E-05	480.2920491750957	88.735	0.58673	88.564	88.297	88.883	-0.17054					30	13	3	0	0	0	0.03666	1	10827	10827		136.27	1.4574	1	540900			72264	4666	50673	50755	78957	78957					0.0889551124580521
SIISNLITV	9	Unmodified	_SIISNLITV_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.29254150390625	2	480.292225	958.569897	-0.11941	-5.7352E-05	0.035251	1.6931E-05	-0.08416	-4.0421E-05	480.2920406792796	88.725	0.59165	88.593	88.318	88.91	-0.13135					33	13	4	0	0	0	0.062622	1	10837	10837		124.08	1.9041	1	525360			72265	4666	50673	50755	78958	78958					0.0889551124580521
SIITEYVDS	9	Unmodified	_SIITEYVDS_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7744750976562	2	513.75313	1025.49171	-0.18444	-9.4755E-05	3.2058	0.001647	3.0213	0.0015522	513.7535209390616	47.743	0.43367	47.467	47.268	47.701	-0.27598					22	11	3	0	0	0	0.024541	1	4708	4708		11.511	0	1	169490	+		72266	28806	50674	50756	78959	78959					-0.020019661300921143
SIIVPAPAVL	10	Unmodified	_SIIVPAPAVL_					0	0	0			REV__ENST00000490546.1_1_1:31439047-31452930:-|nuORF	REV__ENST00000490546.1_1_1:31439047-31452930:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2484436035156	2	490.312961	978.611368	0.14517	7.1177E-05	-0.19681	-9.65E-05	-0.051646	-2.5323E-05	490.3127662830416	68.204	0.66138	67.912	67.782	68.443	-0.29206					25	16	3	0	0	0	0.03519	1	8205	8205		31.955	19.748	1	357790	+		72267	23468	50675	50757	78960	78960					0.1212069200513497
SIKDKSQQV	9	Unmodified	_SIKDKSQQV_					0	0	0		ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;ENST00000496513.1_9:42713885-42714077:+|nuORF;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000468061.1_9:69204965-69229730:-|nuORF;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000460896.1_9:42685444-42714533:+|nuORF;nc|ENSG00000215126|Q5RIA9-2|ZNG1E	ENSG00000172785|ENST00000356521|ZNG1A	ENSG00000172785|ENST00000356521|ZNG1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2709350585938	2	516.787838	1031.56112	-0.44302	-0.00022895	-0.53486	-0.00027641	-0.97788	-0.00050536	516.7876712318279	28.388	0.61489	28.236	28.04	28.655	-0.15195					20	14	2	0	0	0	0.024263	1	1625	1625		34.173	0	1	224690			72268	8309	50676	50758	78961	78961					0.04660537609311177
SIKDKSQQV	9	Unmodified	_SIKDKSQQV_					0	0	0		ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;ENST00000496513.1_9:42713885-42714077:+|nuORF;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000468061.1_9:69204965-69229730:-|nuORF;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000460896.1_9:42685444-42714533:+|nuORF;nc|ENSG00000215126|Q5RIA9-2|ZNG1E	ENSG00000172785|ENST00000356521|ZNG1A	ENSG00000172785|ENST00000356521|ZNG1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.787838	1031.56112	-0.98868	-0.00051094	-4.4261	-0.0022873	-5.4147	-0.0027983	517.2874789797596	27.97	0.85496	27.97	27.508	28.362	0	-0.088623	-0.0023033	NaN	34.173	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113390			72269	8309	50676	50758							0.04660537609311177
SIKDKSQQV	9	Unmodified	_SIKDKSQQV_					0	0	0		ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;ENST00000496513.1_9:42713885-42714077:+|nuORF;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000468061.1_9:69204965-69229730:-|nuORF;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000460896.1_9:42685444-42714533:+|nuORF;nc|ENSG00000215126|Q5RIA9-2|ZNG1E	ENSG00000172785|ENST00000356521|ZNG1A	ENSG00000172785|ENST00000356521|ZNG1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.787838	1031.56112	-0.54795	-0.00028317	-5.0744	-0.0026224	-5.6224	-0.0029056	517.2871129535649	27.982	0.86473	27.978	27.509	28.374	-0.0042019	-0.080845	-0.0029734	NaN	34.173	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77677			72270	8309	50676	50758							0.04660537609311177
SIKDKSQQV	9	Unmodified	_SIKDKSQQV_					0	0	0		ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000486387.2_9:42689759-42714533:+|nuORF;ENST00000496513.1_9:42713885-42714077:+|nuORF;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000468061.1_9:69204965-69229730:-|nuORF;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000460896.1_9:42685444-42714533:+|nuORF;nc|ENSG00000215126|Q5RIA9-2|ZNG1E	ENSG00000172785|ENST00000356521|ZNG1A	ENSG00000172785|ENST00000356521|ZNG1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.787838	1031.56112	-1.0656	-0.0005507	-4.1701	-0.002155	-5.2357	-0.0027057	516.7851441025767	27.746	0.5966	27.827	27.571	28.168	0.081291	-0.23158	-0.0020387	NaN	34.173	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82997			72271	8309	50676	50758							0.04660537609311177
SIKDLTDGHF	10	Unmodified	_SIKDLTDGHF_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.3125610351562	2	566.785296	1131.55604	-0.029959	-1.698E-05	3.9057	0.0022137	3.8757	0.0021967	566.7871939190627	35.062	0.24207	34.847	34.671	34.913	-0.21555					6	5	2	0	0	0	0.03519	1	2605	2605		41.427	5.8083	1	69032			72272	10461	50677	50759	78962	78962					-0.0044776625329632225
SIKDLTDGHF	10	Unmodified	_SIKDLTDGHF_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	566.785296	1131.55604	-0.33846	-0.00019183	5.2376	0.0029686	4.8991	0.0027768	566.7878842890894	35.093	0.23746	34.88	34.725	34.963	-0.21246	0.013181	0.00053141	NaN	41.427	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77947			72273	10461	50677	50759							-0.0044776625329632225
SIKDLTDGHF	10	Unmodified	_SIKDLTDGHF_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	566.785296	1131.55604	-0.51084	-0.00028954	5.048	0.0028611	4.5371	0.0025716	567.2904468998619	35.061	0.3882	34.874	34.56	34.948	-0.18675	0.0072014	0.00031647	NaN	41.427	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53293			72274	10461	50677	50759							-0.0044776625329632225
SIKGKRAR	8	Unmodified	_SIKGKRAR_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.279296875	2	458.295968	914.577383	-0.88168	-0.00040407	3.0395	0.001393	2.1578	0.00098892	458.29740511589625	44.055	0.33846	43.835	43.562	43.9	-0.21938					12	8	2	0	0	0	0.027866	1	4072	4072		25.45	3.7478	1	391910			72275	16222	50678	50760	78963	78963					0.11667708356742423
SIKIHQNNN	9	Unmodified	_SIKIHQNNN_					0	0	0			REV__nc|ENSG00000111880|O60942-4|RNGTT	REV__nc|ENSG00000111880|O60942-4|RNGTT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.283203125	2	534.283254	1066.55196	-0.34549	-0.00018459	3.4049	0.0018192	3.0594	0.0016346	534.2854367620389	105.78	1.0462	105.77	105.28	106.33	-0.0013199					80	36	3	0	0	0	0.75397	1	13536	13536		42.396	3.59	1	240410	+		72276	36567	50679	50761	78964	78964					0.021341890436588073
SIKKESDLPA	10	Unmodified	_SIKKESDLPA_					0	0	0		nc|ENSG00000107938|Q3B7T1-3|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1	nc|ENSG00000107938|Q3B7T1-3|EDRF1	nc|ENSG00000107938|Q3B7T1-3|EDRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.8212890625	2	544.303321	1086.59209	-0.64086	-0.00034882	3.3027	0.0017977	2.6619	0.0014489	544.3048451905526	98.931	0.43385	98.762	98.595	99.029	-0.16863					15	9	2	0	0	0	0.03519	1	12269	12269		32.812	1.2826	1	56559			72277	2869	50680	50762	78965	78965					0.05225690923566617
SIKKLHKALLL	11	Unmodified	_SIKKLHKALLL_					0	0	0			REV__chr7:22473234-22492565|128|15.83|0.09|7.44|-|0|TE_info:LTR16D1,LTR16D1_dup108,ERVL,LTR,acceptor,-,22473050,22473234|None,STEAP1B|1	REV__chr7:22473234-22492565|128|15.83|0.09|7.44|-|0|TE_info:LTR16D1,LTR16D1_dup108,ERVL,LTR,acceptor,-,22473050,22473234|None,STEAP1B|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	632.4312133789062	2	632.42919	1262.84383	1.3725	0.00086802	0.11583	7.3255E-05	1.4883	0.00094127	632.4288029042639	107.71	0.34282	107.71	107.57	107.91	0					33	17	3	0	0	0	1.0872	1	13826	13826		14.865	3.9993	1	2468000	+		72278	19464	50681	50763	78966	78966					0.22291954075762987
SIKKMKEEF	9	Oxidation (M)	_SIKKM(Oxidation (M))KEEF_		SIKKM(1)KEEF		SIKKM(110)KEEF	0	0	1			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.3057250976562	2	578.307549	1154.60055	-0.9511	-0.00055003	-2.1935	-0.0012685	-3.1446	-0.0018185	578.3060799429791	42.082	0.87733	41.85	41.508	42.385	-0.23186					72	23	4	0	0	0	0.091713	1	3739	3739		113.41	20.216	1	4578700	+		72279	27780	50682	50764	78967	78967		824			0.029429215685240706
SIKNNSIDL	9	Unmodified	_SIKNNSIDL_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2744445800781	2	502.274564	1002.53457	-0.34479	-0.00017318	-0.40971	-0.00020579	-0.75449	-0.00037896	502.2743666614946	48.637	1.8074	48.637	48.277	50.084	0					145	50	5	0	0	0	0.091713	2	4963	4951;4963		113.41	9.3548	1	33137000	+		72280	19884	50683	50765	78968;78969	78969					0.033408487179940494
SIKSKHDI	8	Unmodified	_SIKSKHDI_					0	0	0			REV__nc|ENSG00000164418|Q13002-6|GRIK2	REV__nc|ENSG00000164418|Q13002-6|GRIK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2803039550781	2	464.266542	926.51853	0.79167	0.00036755	-0.51107	-0.00023727	0.2806	0.00013027	464.2668652316419	50.261	0.39639	50.342	50.18	50.576	0.08099					20	11	2	0	0	0	0.027866	1	5186	5186		71.296	0	1	139030	+		72281	36866	50684	50766	78970	78970					0.052331872717559236
SIKSLIITK	9	Unmodified	_SIKSLIITK_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|21|3|sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|21|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7825012207031	2	501.831517	1001.64848	-1.3169	-0.00066087	-1.9646	-0.00098589	-3.2815	-0.0016468	502.3340817983258	44.434	0.23127	44.289	44.162	44.394	-0.14471					9	6	2	0	0	0	0.024541	1	4202	4202		19.104	0	1	105670	+		72282	36246	50685	50767	78971	78971					0.14772363550889622
SIKVGSTAVQV	11	Unmodified	_SIKVGSTAVQV_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.8197631835938	2	544.819138	1087.62372	0.92509	0.000504	2.9615	0.0016135	3.8866	0.0021175	544.8205090762251	98.64	1.3744	98.515	98.197	99.571	-0.12413					70	34	3	0	0	0	0.67171	1	12200	12200		65.465	2.1591	1	834230			72283	9914	50686	50768	78972	78972					0.08341683677508627
SILATGSIIKI	11	Unmodified	_SILATGSIIKI_					0	0	0			REV__ENST00000547013.1_1_12:50153049-50155509:+|nuORF	REV__ENST00000547013.1_1_12:50153049-50155509:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.8086547851562	2	558.355357	1114.69616	-0.093624	-5.2275E-05	0.928	0.00051816	0.83438	0.00046588	558.3557621163887	52.118	0.63538	52.118	51.836	52.472	0					36	16	3	0	0	0	0.02478	1	5571	5571		56.434	21.282	1	312850	+		72284	34856	50687	50769	78973	78973					0.1434001775107845
SILDIVTKV	9	Unmodified	_SILDIVTKV_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.3082580566406	2	494.307875	986.601197	0.12607	6.2319E-05	0.091782	4.5368E-05	0.21786	0.00010769	494.30776625601226	79.19	0.71003	78.938	78.647	79.357	-0.25141					41	16	3	0	0	0	0.247	2	9467	9453;9467		82.75	16.55	1	988280			72285	7015	50688	50770	78974;78975	78975					0.10736084279915303
SILDIVTKV	9	Unmodified	_SILDIVTKV_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.3084716796875	2	494.307875	986.601197	0.28005	0.00013843	0.48242	0.00023846	0.76247	0.00037689	494.30771651336676	79.148	0.79168	78.928	78.617	79.409	-0.22076					60	18	6	0	0	0	0.30449	2	9474	9462;9474		75.043	22.107	1	1059200			72286	7015	50688	50770	78976;78977	78977					0.10736084279915303
SILDIVTKV	9	Unmodified	_SILDIVTKV_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.3084411621094	2	494.307875	986.601197	0.1482	7.3255E-05	-0.044909	-2.2199E-05	0.10329	5.1056E-05	494.3077101032807	79.112	0.71268	78.961	78.65	79.363	-0.15051					45	16	4	0	0	0	0.67687	2	9448	9435;9448		47.657	6.8792	1	1005800			72287	7015	50688	50770	78978;78979	78979					0.10736084279915303
SILDQVWNI	9	Unmodified	_SILDQVWNI_					0	0	0		LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant;ENSG00000145220|ENST00000343470|LYAR	LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.3331909179688	2	544.292756	1086.57096	0.55367	0.00030136	1.7897	0.0009741	2.3433	0.0012755	544.2919678075077	97.075	1.0812	96.938	96.657	97.738	-0.1367					53	23	3	0	0	0	0.024344	1	11995	11995		54.776	5.2403	1	212790			72288	5798	50689	50771	78980	78980					0.031137256147076187
SILDQVWNI	9	Unmodified	_SILDQVWNI_					0	0	0		LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant;ENSG00000145220|ENST00000343470|LYAR	LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	LYAR|p.E190Kfs*31|1|0.11|ENSG00000145220|chr4:4274634-4274635|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3331298828125	2	544.292756	1086.57096	0.79491	0.00043266	-0.93435	-0.00050856	-0.13944	-7.5897E-05	544.291672572587	97.143	1.0714	97.019	96.572	97.643	-0.12368					52	23	3	0	0	0	0.022882	1	12009	12009		75.043	8.0814	1	195600			72289	5798	50689	50771	78981	78981					0.031137256147076187
SILDRAGLPM	10	Unmodified	_SILDRAGLPM_					0	0	0			REV__nc|ENSG00000105146|Q9UQB9-2|AURKC	REV__nc|ENSG00000105146|Q9UQB9-2|AURKC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7589111328125	2	536.794609	1071.57467	-0.67231	-0.00036089	1.835	0.00098503	1.1627	0.00062414	536.7956030613294	39.833	0.74262	39.608	39.223	39.965	-0.225					36	17	3	0	0	0	0.03519	1	3363	3363		20.947	2.6848	1	777440	+		72290	21498	50690	50772	78982	78982					0.041740721168935124
SILEAVPQV	9	Unmodified	_SILEAVPQV_					0	0	0		ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.27716064453125	2	478.276575	954.538597	0.51644	0.000247	-0.40502	-0.00019371	0.11142	5.3288E-05	478.27627972810893	74.935	2.0097	74.935	74.298	76.308	0					90	51	4	0	0	0	0.086035	3	9179	9179;9190;9205		115.49	23.938	1	4339100			72291	5098	50691	50773	78983;78984;78985	78983					0.0595093821170849
SILEAVPQV	9	Unmodified	_SILEAVPQV_					0	0	0		ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.277099609375	2	478.276575	954.538597	0.15639	7.4797E-05	-0.22714	-0.00010863	-0.07075	-3.3838E-05	478.2763951473494	75.247	1.9624	75.003	74.341	76.303	-0.24455					84	50	3	0	0	0	0.10174	4	9191	9179;9191;9203;9217		110.12	30.012	1	4122200			72292	5098	50691	50773	78986;78987;78988;78989	78987					0.0595093821170849
SILEAVPQV	9	Unmodified	_SILEAVPQV_					0	0	0		ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2770080566406	2	478.276575	954.538597	0.0011575	5.5363E-07	-0.15567	-7.4453E-05	-0.15451	-7.3899E-05	478.2764025575012	75.02	1.0722	75.031	74.397	75.47	0.010376					62	26	3	0	0	0	0.077175	4	9120	9108;9120;9134;9146		118.74	27.295	1	4147200			72293	5098	50691	50773	78990;78991;78992;78993	78991					0.0595093821170849
SILEAVPQV	9	Unmodified	_SILEAVPQV_					0	0	0		ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.276575	954.538597	0.41853	0.00020017	-1.1018	-0.00052698	-0.6833	-0.00032681	478.27593706775485	75.247	0.54038	74.973	74.764	75.304	-0.27428	0.0031274	-0.00077803	NaN	118.74	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106600			72294	5098	50691	50773							0.0595093821170849
SILEAVPQV	9	Unmodified	_SILEAVPQV_					0	0	0		ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.276575	954.538597	-0.2528	-0.00012091	-0.15566	-7.445E-05	-0.40846	-0.00019536	478.2763121499674	75.216	0.46298	74.956	74.694	75.157	-0.26002	-0.014035	0.00012702	NaN	118.74	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134520			72295	5098	50691	50773							0.0595093821170849
SILEAVPQV	9	Unmodified	_SILEAVPQV_					0	0	0		ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	ENSG00000137198|ENST00000259727|GMPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.276575	954.538597	0.44355	0.00021214	-0.93544	-0.0004474	-0.49189	-0.00023526	478.2758519484615	75.097	0.50877	74.922	74.604	75.113	-0.17548	-0.048005	-0.00061888	NaN	118.74	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112480			72296	5098	50691	50773							0.0595093821170849
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7591857910156	2	485.758215	969.501877	0.23249	0.00011294	0.08342	4.0522E-05	0.31591	0.00015346	485.7581322783421	72.037	1.5767	72.037	71.642	73.219	0					119	39	4	0	0	0	0.039744	4	8775	8739;8750;8762;8775		133.81	24.713	1	5463500			72297	1267	50692	50774	78994;78995;78996;78997	78997					0.015906415951349118
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7581481933594	2	485.758215	969.501877	0.56002	0.00027203	-0.33764	-0.00016401	0.22238	0.00010802	485.75795403620043	72.388	1.7178	72.107	71.62	73.338	-0.28124					103	43	3	0	0	0	0.028071	4	8769	8747;8758;8769;8780		143.11	31.459	1	4791200			72298	1267	50692	50774	78998;78999;79000;79001	79000					0.015906415951349118
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7583312988281	2	485.758215	969.501877	0.15591	7.5734E-05	-0.02501	-1.2149E-05	0.1309	6.3586E-05	485.7581061737279	72.086	1.6009	72.096	71.69	73.291	0.0097733					98	40	3	0	0	0	0.016871	5	8697	8663;8674;8685;8697;8709		152.47	31.85	1	6016700			72299	1267	50692	50774	79002;79003;79004;79005;79006	79005					0.015906415951349118
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.75848388671875	2	485.758215	969.501877	-0.023976	-1.1647E-05	0.11178	5.4296E-05	0.0878	4.2649E-05	485.75811496833256	72.399	1.2238	72.122	71.828	73.051	-0.2769					78	28	4	0	0	0	0.072054	2	8482	8482;8493		120.62	29.844	1	1278300			72300	1267	50692	50774	79007;79008	79007					0.015906415951349118
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7577819824219	2	485.758215	969.501877	0.247	0.00011998	-0.16609	-8.0681E-05	0.080907	3.9301E-05	485.758006842451	72.415	1.3412	72.151	71.676	73.017	-0.26479					87	31	4	0	0	0	0.20967	1	8491	8491		87.754	18.967	1	1662300			72301	1267	50692	50774	79009	79009					0.015906415951349118
SILEDPPSI	9	Unmodified	_SILEDPPSI_					0	0	0		ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13	ENSG00000064102|ENST00000261191|INTS13	ENSG00000064102|ENST00000261191|INTS13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.75872802734375	2	485.758215	969.501877	-0.16313	-7.9242E-05	0.13978	6.7898E-05	-0.023353	-1.1344E-05	485.75811211348827	72.279	1.253	72.081	71.666	72.919	-0.1981					81	29	4	0	0	0	0.082191	2	8449	8449;8458		116.9	22.897	1	1645000			72302	1267	50692	50774	79010;79011	79010					0.015906415951349118
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7977905273438	2	533.798206	1065.58186	0.10695	5.7089E-05	-1.0068	-0.00053742	-0.89984	-0.00048033	533.7976146410703	55.268	1.2311	55.268	54.908	56.139	0					103	34	5	0	0	0	0.015901	4	6081	6070;6081;6093;6103		157.33	35.153	1	23671000			72303	2593	50693	50775	79012;79013;79014;79015	79013					0.05169127988983746
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7982177734375	2	533.798206	1065.58186	-0.52885	-0.0002823	-0.37368	-0.00019947	-0.90253	-0.00048177	533.7979292868065	55.335	1.3212	55.185	54.857	56.179	-0.15036					105	36	5	0	0	0	0.013094	4	6070	6059;6070;6081;6092		171.38	36.574	1	30258000			72304	2593	50693	50775	79016;79017;79018;79019	79017					0.05169127988983746
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7976684570312	2	533.798206	1065.58186	-1.1702	-0.00062466	0.063785	3.4048E-05	-1.1064	-0.00059061	533.7981157228131	55.062	1.2255	55.16	54.807	56.033	0.098015					95	33	5	0	0	0	0.03849	3	5966	5966;5976;5988		134.81	41.969	1	27118000			72305	2593	50693	50775	79020;79021;79022	79020					0.05169127988983746
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7972412109375	2	533.798206	1065.58186	-0.96938	-0.00051746	0.77206	0.00041212	-0.19733	-0.00010533	533.7985122943194	55.287	0.9933	55.141	54.873	55.867	-0.14609					63	27	4	0	0	0	0.2101	1	5929	5929		87.696	27.578	1	4826700			72306	2593	50693	50775	79023	79023					0.05169127988983746
SILESVWIT	9	Unmodified	_SILESVWIT_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3035278320312	2	524.289682	1046.56481	-0.76024	-0.00039859	2.3785	0.001247	1.6182	0.00084842	524.2909540338197	85.645	0.53521	85.669	85.325	85.86	0.023666					16	12	2	0	0	0	0.024436	1	10644	10644		16.473	0.83134	1	68338			72307	3560	50694	50776	79024	79024					0.04339207383191024
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7689208984375	2	466.768583	931.522613	1.1674	0.00054493	-1.1064	-0.00051644	0.061033	2.8488E-05	466.7679623327582	73.976	1.4571	73.976	73.698	75.155	0					80	34	4	0	0	0	0.014907	5	9042	9031;9042;9053;9066;9080		162.31	55.89	1	5020600			72308	2986	50695	50777	79025;79026;79027;79028;79029	79026					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.76885986328125	2	466.768583	931.522613	0.39769	0.00018563	-0.35828	-0.00016723	0.039412	1.8396E-05	466.76826994091044	74.267	1.2027	74.008	73.78	74.983	-0.25887					63	28	4	0	0	0	0.013492	4	9051	9040;9051;9063;9079		177.71	58.15	1	4903600			72309	2986	50695	50777	79030;79031;79032;79033	79031					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7690124511719	2	466.768583	931.522613	0.25171	0.00011749	-0.28804	-0.00013445	-0.036332	-1.6959E-05	466.76832025788184	73.99	1.4959	74	73.753	75.249	0.0096512					79	35	3	0	0	0	0.013492	4	8969	8960;8969;8981;8995		177.71	58.15	1	5718000			72310	2986	50695	50777	79034;79035;79036;79037	79035					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.7698669433594	2	466.768583	931.522613	0.15519	7.2439E-05	-0.24131	-0.00011263	-0.086114	-4.0196E-05	466.76836057411066	74.267	0.9711	73.992	73.833	74.804	-0.27573					54	24	4	0	0	0	0.022311	4	8739	8739;8751;8762;8777		147.69	53.687	1	3910000			72311	2986	50695	50777	79038;79039;79040;79041	79038					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.7696228027344	2	466.768583	931.522613	0.28425	0.00013268	-0.21504	-0.00010037	0.069213	3.2306E-05	466.7683257002467	74.267	0.8394	74.003	73.811	74.65	-0.26325					44	20	3	0	0	0	0.014907	5	8759	8744;8749;8759;8771;8786		162.31	55.89	1	3358400			72312	2986	50695	50777	79042;79043;79044;79045;79046	79044					0.054112319748242044
SILETVTAV	9	Unmodified	_SILETVTAV_					0	0	0		nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	nc|ENSG00000109654|Q9C040|TRIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.7685852050781	2	466.768583	931.522613	0.18492	8.6316E-05	-0.19324	-9.0196E-05	-0.0083126	-3.8801E-06	466.768385492653	74.08	1.1181	73.897	73.691	74.809	-0.18279					55	28	3	0	0	0	0.022311	4	8733	8714;8721;8733;8747		147.69	41.484	1	3141700			72313	2986	50695	50777	79047;79048;79049;79050	79049					0.054112319748242044
SILEYRDFL	9	Unmodified	_SILEYRDFL_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.30615234375	2	578.305864	1154.59717	-0.50141	-0.00028997	1.1743	0.0006791	0.67289	0.00038913	578.3065496941524	71.286	0.57516	71.286	71.105	71.68	0					43	14	4	0	0	0	0.247	1	8640	8640		82.75	2.2959	1	2671900			72314	3397	50696	50778	79051	79051					0.02605994786199517
SILEYRDFL	9	Unmodified	_SILEYRDFL_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.3062133789062	2	578.305864	1154.59717	0.22418	0.00012964	1.1654	0.00067396	1.3896	0.00080361	578.3062905813888	71.637	1.0572	71.348	71.036	72.093	-0.28858					65	27	5	0	0	0	0.32064	1	8655	8655		72.879	0	1	2306000			72315	3397	50696	50778	79052	79052					0.02605994786199517
SILEYSTEFL	10	Unmodified	_SILEYSTEFL_					0	0	0			REV__ENSG00000214654|ENST00000689072|B3GALT9	REV__ENSG00000214654|ENST00000689072|B3GALT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	601.2774658203125	2	601.302987	1200.59142	-0.88825	-0.00053411	-3.4844	-0.0020952	-4.3727	-0.0026293	601.3008775252716	84.783	0.3718	84.783	84.504	84.876	0					12	8	2	0	0	0	0.03519	1	10613	10613		87.754	18.967	1	42418	+		72316	28782	50697	50779	79053	79053					-0.0008514851613199426
SILFDRLN	8	Unmodified	_SILFDRLN_					0	0	0			REV__nc|ENSG00000186086|Q5VWK0-2|NBPF6	REV__nc|ENSG00000186086|Q5VWK0-2|NBPF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.28399658203125	2	489.274367	976.53418	-0.19555	-9.5679E-05	0.57701	0.00028232	0.38146	0.00018664	489.27453048014246	55.22	0.51632	55.07	54.82	55.336	-0.15036					27	14	3	0	0	0	0.027866	1	6093	6093		29.15	10.825	1	744110	+		72317	37023	50698	50780	79054	79054					0.04497473788808293
SILGSLVVTV	10	Unmodified	_SILGSLVVTV_					0	0	0		ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000120328|ENST00000239450|PCDHB12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.30767822265625	2	494.307875	986.601197	-0.62463	-0.00030876	1.1483	0.00056763	0.52371	0.00025887	494.3082634711341	79.261	0.87502	79.089	78.777	79.652	-0.17226					52	20	4	0	0	0	1.1179	1	9797	9797		19.997	0	1	789060			72318	3808	50699	50781	79055	79055					0.10736084279903935
SILHLGLV	8	Unmodified	_SILHLGLV_					0	0	0		UBR5|p.D2463H|1|0.12|ENSG00000104517|chr8:102266982-102266982|C/G|missense_variant	UBR5|p.D2463H|1|0.12|ENSG00000104517|chr8:102266982-102266982|C/G|missense_variant	UBR5|p.D2463H|1|0.12|ENSG00000104517|chr8:102266982-102266982|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.23480224609375	2	426.271096	850.527639	-1.0321	-0.00043995	-3.9965	-0.0017036	-5.0286	-0.0021435	426.2695755407165	28.052	0.54819	28.052	27.726	28.274	0					22	13	3	0	0	0	0.027866	1	1613	1613		28.254	0	1	248510			72319	38125	50700	50782	79056	79056					0.09639580628095246
SILHRTLSS	9	Unmodified	_SILHRTLSS_					0	0	0			REV__nc|ENSG00000197841|Q2M3W8-2|ZNF181	REV__nc|ENSG00000197841|Q2M3W8-2|ZNF181	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.806396484375	2	507.290548	1012.56654	-1.1943	-0.00060585	3.5884	0.0018204	2.3941	0.0012145	507.29159519554474	21.127	0.88763	20.914	20.475	21.363	-0.2128					39	17	4	0	0	0	0.024405	1	562	562		27.882	0	1	223580	+		72320	28352	50701	50783	79057	79057					0.06076261191822141
SILITLNSV	9	Unmodified	_SILITLNSV_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.29327392578125	2	480.292225	958.569897	0.35586	0.00017092	-0.62199	-0.00029874	-0.26613	-0.00012782	480.29165071044395	88.765	0.58965	88.628	88.357	88.946	-0.13744					30	13	3	0	0	0	0.091713	1	10827	10827		113.41	12.159	1	455650	+		72321	23577	50702	50784	79058	79058					0.08895511245816579
SILITPFLV	9	Unmodified	_SILITPFLV_					0	0	0			REV__ENSG00000255804|ENST00000540461|OR6J1	REV__ENSG00000255804|ENST00000540461|OR6J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.8005065917969	2	501.815336	1001.61612	0.14625	7.339E-05	-2.3169	-0.0011626	-2.1706	-0.0010893	501.81425877882344	46.568	0.14446	46.568	46.515	46.659	0					6	3	2	0	0	0	0.024354	1	4622	4622		47.916	22.465	1	216120	+		72322	29073	50703	50785	79059	79059					0.11537576147895834
SILITPFLV	9	Unmodified	_SILITPFLV_					0	0	0			REV__ENSG00000255804|ENST00000540461|OR6J1	REV__ENSG00000255804|ENST00000540461|OR6J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.8005065917969	2	501.815336	1001.61612	0.10961	5.5005E-05	3.7011	0.0018573	3.8107	0.0019123	501.81760385751676	46.429	0.49938	46.429	46.273	46.772	0					22	13	3	0	0	0	0.024354	1	4622	4622		47.916	9.1095	1	274120	+		72323	29073	50703	50785	79060	79060					0.11537576147895834
SILKDVLSK	9	Unmodified	_SILKDVLSK_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.79718017578125	2	501.813325	1001.6121	0.57825	0.00029017	1.1208	0.00056242	1.699	0.0008526	501.8136796937351	19.201	0.59593	19.001	18.859	19.455	-0.2001					16	11	2	0	0	0	0.024541	1	436	436		15.642	8.4485	1	47701			72324	5268	50704	50786	79061	79061					0.11135486654188753
SILKESLNL	9	Unmodified	_SILKESLNL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2740478515625	2	508.802957	1015.59136	-0.32288	-0.00016428	0.82522	0.00041987	0.50234	0.00025559	508.80329415432044	44.836	0.62575	44.873	44.647	45.272	0.036903					41	17	3	0	0	0	0.024447	1	4238	4238		19.104	6.8967	1	608060			72325	5623	50705	50787	79062	79062					0.08418896274520193
SILKESLNL	9	Unmodified	_SILKESLNL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.802957	1015.59136	-0.8571	-0.00043609	1.2697	0.00064601	0.41256	0.00020991	508.8035603307392	44.847	0.69048	44.847	44.587	45.278	0	-0.091949	0.00068765	NaN	37.812	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662550			72326	5623	50705	50787							0.08418896274520193
SILKESLNL	9	Unmodified	_SILKESLNL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.802957	1015.59136	-0.92501	-0.00047065	1.3967	0.00071063	0.47167	0.00023999	508.8036196821478	44.959	0.58786	44.81	44.593	45.181	-0.1488	-0.12887	0.00081689	NaN	37.812	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742010			72327	5623	50705	50787							0.08418896274520193
SILKESLNL	9	Unmodified	_SILKESLNL_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.802957	1015.59136	-0.69385	-0.00035303	0.26747	0.00013609	-0.42638	-0.00021694	508.8029786999791	45.13	0.50002	45.03	44.789	45.289	-0.099445	0.091189	-0.00033219	NaN	37.812	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1183200			72328	5623	50705	50787							0.08418896274520193
SILKRYTL	8	Unmodified	_SILKRYTL_					0	0	0		ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.307373046875	2	497.30821	992.601866	0.67941	0.00033788	0.53105	0.0002641	1.2105	0.00060197	497.3077209831261	83.172	1.8042	83.082	82.399	84.203	-0.090454					82	41	3	0	0	0	0.77775	1	10339	10339		60.972	6.1956	1	396490			72329	13287	50706	50788	79063	79063					0.10526923719623937
SILKRYTL	8	Unmodified	_SILKRYTL_					0	0	0		ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.30718994140625	2	497.30821	992.601866	-0.47354	-0.00023549	1.4485	0.00072035	0.97495	0.00048485	497.3082608904199	82.874	1.673	82.901	82.359	84.032	0.026558					76	38	3	0	0	0	0.77775	1	10292	10292		60.972	2.19	1	441880			72330	13287	50706	50788	79064	79064					0.10526923719623937
SILKRYTL	8	Unmodified	_SILKRYTL_					0	0	0		ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	ENST00000379887.8_2_15:72877639-72878143:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.30821	992.601866	-0.19211	-9.5535E-05	1.056	0.00052514	0.86386	0.0004296	497.3081577401783	83.101	1.8088	83.101	82.406	84.215	0	0.073333	1.1144E-05	NaN	60.972	70	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411360			72331	13287	50706	50788							0.10526923719623937
SILKVKGLN	9	Unmodified	_SILKVKGLN_					0	0	0			REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF	REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7457580566406	2	486.316035	970.617516	-0.82595	-0.00040167	0.80818	0.00039303	-0.017768	-8.6408E-06	486.3162962653325	62.041	0.42712	61.863	61.576	62.003	-0.17781					20	10	3	0	0	0	0.024292	1	6985	6985		58.782	3.2778	1	436770	+		72332	30024	50707	50789	79065	79065					0.13103210236670293
SILKVKGLN	9	Unmodified	_SILKVKGLN_					0	0	0			REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF	REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.316035	970.617516	0.10931	5.3159E-05	0.020551	9.9944E-06	0.12986	6.3153E-05	486.31599312443	62.14	0.35112	61.883	61.667	62.018	-0.25725	-0.033125	-0.00043959	NaN	58.782	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260170	+		72333	30024	50707	50789							0.13103210236670293
SILLLGVAH	9	Unmodified	_SILLLGVAH_					0	0	0		ENSG00000132386|ENST00000254722|SERPINF1;ENST00000573763.1_1_17:1675146-1678370:+|nuORF	ENSG00000132386|ENST00000254722|SERPINF1	ENSG00000132386|ENST00000254722|SERPINF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	462.7608947753906	2	461.789653	921.564752	-1.0002	-0.0004619	0.704	0.0003251	-0.29623	-0.0001368	461.7898920166477	48.682	1.0888	48.403	48.113	49.201	-0.27899					69	29	3	0	0	0	0.024258	1	4912	4912		44.531	17.735	1	4757100			72334	4601	50708	50790	79066	79066					0.10083252173853907
SILLSSEIEP	10	Unmodified	_SILLSSEIEP_					0	0	0			REV__ENSG00000108018|ENST00000263054|SORCS1	REV__ENSG00000108018|ENST00000263054|SORCS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7843627929688	2	544.297704	1086.58086	-0.29879	-0.00016263	3.6224	0.0019717	3.3236	0.001809	544.3000152797667	51.449	0.42109	51.449	51.212	51.633	0					15	11	2	0	0	0	0.03519	1	5417	5417		20.947	0	1	196900	+		72335	21707	50709	50791	79067	79067					0.04102868829431827
SILMGMKG	8	Unmodified	_SILMGMKG_					0	0	0			REV__ENST00000003912.7_2_1:24796532-24796766:+|nuORF	REV__ENST00000003912.7_2_1:24796532-24796766:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.8509521484375	2	418.722067	835.429581	-0.43755	-0.00018321	3.5814	0.0014996	3.1439	0.0013164	418.72325529259336	30.816	0.825	30.575	30.248	31.073	-0.24109					28	19	2	0	0	0	0.027866	1	1982	1982		19.36	7.1531	1	134470	+		72336	29257	50710	50792	79068	79068					0.0052831271624427245
SILMGMKG	8	Unmodified	_SILMGMKG_					0	0	0			REV__ENST00000003912.7_2_1:24796532-24796766:+|nuORF	REV__ENST00000003912.7_2_1:24796532-24796766:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	418.722067	835.429581	-0.53621	-0.00022452	3.4417	0.0014411	2.9055	0.0012166	418.72321815296164	30.734	0.74717	30.556	30.283	31.03	-0.17817	-0.040474	0.00030059	NaN	3.6843	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173610	+		72337	29257	50710	50792							0.0052831271624427245
SILMHLLIY	9	Oxidation (M)	_SILM(Oxidation (M))HLLIY_		SILM(1)HLLIY		SILM(48)HLLIY	0	0	1			REV__ENSG00000173302|ENST00000309926|GPR148	REV__ENSG00000173302|ENST00000309926|GPR148	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8154296875	2	559.817553	1117.62055	-0.92952	-0.00052036	-2.6568	-0.0014873	-3.5863	-0.0020077	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.67308	1	10084	10084		47.916	7.343	1	11139000	+		72338	26764	50711	50793	79069	79069		789			0.06644717299172953
SILMSTVVLD	10	Unmodified	_SILMSTVVLD_					0	0	0		ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.3045654296875	2	539.29665	1076.57875	-0.59983	-0.00032349	-4.1926	-0.002261	-4.7924	-0.0025845	539.2943453033195	86.161	0.94523	86.116	85.737	86.683	-0.045105					43	21	3	0	0	0	0.03519	1	10744	10744		58.782	0	1	399210			72339	10634	50712	50794	79070	79070					0.04352116819995899
SILNALSTV	9	Unmodified	_SILNALSTV_					0	0	0			REV__nc|ENSG00000173848|Q7Z628-2|NET1	REV__nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2680358886719	2	459.26875	916.522947	0.086246	3.961E-05	0.72188	0.00033154	0.80812	0.00037115	459.2690827463652	48.255	1.7426	48.068	47.596	49.339	-0.18684					105	46	3	0	0	0	0.67244	1	4775	4775		47.96	1.9873	1	5330000	+		72340	26815	50713	50795	79071	79071					0.06134651694662807
SILNKKIKN	9	Unmodified	_SILNKKIKN_					0	0	0			REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7792358398438	2	529.340041	1056.66553	-0.082408	-4.3622E-05	3.7311	0.001975	3.6487	0.0019314	529.3417719541843	87.301	1.8451	87.266	85.999	87.844	-0.035355					103	43	3	0	0	0	0.024294	1	10773	10773		45.952	11.779	1	235150	+		72341	35488	50714	50796	79072	79072					0.13946284156691036
SILNKKIKN	9	Unmodified	_SILNKKIKN_					0	0	0			REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.7792358398438	2	529.340041	1056.66553	-0.77216	-0.00040874	4.3103	0.0022816	3.5382	0.0018729	529.342107436928	84.812	1.7435	84.739	84.305	86.048	-0.072769					104	41	3	0	0	0	0.024294	1	10773	10773		45.952	11.779	1	306150	+		72342	35488	50714	50796	79073	79073					0.13946284156691036
SILNNYLIW	9	Unmodified	_SILNNYLIW_					0	0	0		nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2;ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2	nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2490844726562	2	568.310949	1134.60735	0.084064	4.7775E-05	-1.371	-0.00077915	-1.2869	-0.00073137	568.3100728996078	59.749	0.54266	59.501	59.294	59.836	-0.24842					24	13	2	0	0	0	0.024397	1	6621	6621		47.657	7.5992	1	763900			72343	18812	50715	50797	79074	79074					0.04542602511401128
SILPLMGDQH	10	Unmodified	_SILPLMGDQH_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7838745117188	2	555.784241	1109.55393	0.15566	8.6513E-05	0.35922	0.00019965	0.51488	0.00028616	555.7843167357875	74.605	1.0214	74.342	73.923	74.944	-0.26325					55	23	4	0	0	0	0.61732	2	8821	8798;8821		75.043	9.8443	1	1883600	+		72344	23894	50716	50798	79075;79076	79076					0.0035348173726106324
SILQFVHMV	9	Unmodified	_SILQFVHMV_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.775634765625	2	537.294245	1072.57394	0.32491	0.00017457	3.3558	0.001803	3.6807	0.0019776	537.7962592667495	79.665	0.66989	79.418	79.195	79.865	-0.2465					24	15	3	0	0	0	0.024205	1	9527	9527		63.306	9.9548	1	133410			72345	6206	50717	50799	79077	79077					0.04055277467887208
SILQFVHMV	9	Unmodified	_SILQFVHMV_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7767944335938	2	537.294245	1072.57394	-0.12242	-6.5777E-05	2.2163	0.0011908	2.0939	0.001125	537.795886493154	79.452	0.75504	79.233	79.118	79.873	-0.21923					22	17	2	0	0	0	0.024293	1	9522	9522		52.299	0	1	163500			72346	6206	50717	50799	79078	79078					0.04055277467887208
SILQSLVDED	10	Unmodified	_SILQSLVDED_					0	0	0		ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.8004760742188	2	559.782418	1117.55028	0.035584	1.9919E-05	0.90542	0.00050684	0.941	0.00052676	559.782629627362	86.391	0.86969	86.204	85.904	86.773	-0.18695					45	19	3	0	0	0	0.03519	1	10553	10553		37.812	7.4938	1	414860			72347	14020	50718	50800	79079	79079					-0.0037890955561579176
SILQSLVDED	10	Unmodified	_SILQSLVDED_					0	0	0		ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.801025390625	2	559.782418	1117.55028	0.62614	0.0003505	0.15126	8.467E-05	0.7774	0.00043517	559.7822748990482	86.37	1.0378	86.228	85.841	86.879	-0.14217					46	23	3	0	0	0	0.03519	1	10561	10561		54.776	7.119	1	473450			72348	14020	50718	50800	79080	79080					-0.0037890955561579176
SILQSLVDED	10	Unmodified	_SILQSLVDED_					0	0	0		ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	559.782418	1117.55028	0.47011	0.00026316	0.035833	2.0059E-05	0.50595	0.00028322	559.782435751488	86.365	0.94083	86.365	86.085	87.026	0	0.084261	-0.00061796	NaN	37.812	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304370			72349	14020	50718	50800							-0.0037890955561579176
SILQSLVDED	10	Unmodified	_SILQSLVDED_					0	0	0		ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	559.782418	1117.55028	-0.27859	-0.00015595	0.68347	0.0003826	0.40488	0.00022664	559.7827976514454	86.36	0.77477	86.315	86.033	86.807	-0.045105	0.034322	0.00010711	NaN	37.812	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308290			72350	14020	50718	50800							-0.0037890955561579176
SILQSLVDED	10	Unmodified	_SILQSLVDED_					0	0	0		ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	ENST00000423100.5_1_9:131901900-131904824:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	559.782418	1117.55028	-0.58787	-0.00032908	1.0954	0.00061318	0.50752	0.0002841	559.7828681382701	86.33	0.73114	86.354	86.116	86.847	0.023666	0.073649	0.00056829	NaN	37.812	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241420			72351	14020	50718	50800							-0.0037890955561579176
SILQSLVPA	9	Unmodified	_SILQSLVPA_					0	0	0		ENST00000596658.1_1_19:50433558-50434160:+|nuORF;ENST00000423777.6_1_19:50432412-50434160:+|nuORF;ENST00000597227.5_1_19:50432514-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.27972412109375	2	464.279118	926.543683	-0.19628	-9.1128E-05	0.3071	0.00014258	0.11082	5.1453E-05	464.27917818405325	81.014	1.324	81.038	80.656	81.98	0.023903					66	32	3	0	0	0	0.4752	1	10008	10008		60.972	0	1	3248100			72352	14031	50719	50801	79081	79081					0.07747242074333371
SILSAMTLLL	10	Unmodified	_SILSAMTLLL_					0	0	0			REV__nc|ENSG00000182333|P07098-2|LIPF	REV__nc|ENSG00000182333|P07098-2|LIPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3158569335938	2	531.317386	1060.62022	0.16192	8.6032E-05	-3.6787	-0.0019545	-3.5167	-0.0018685	531.3153337598757	97.177	1.6453	97.186	96.751	98.396	0.0089111					67	37	2	0	0	0	0.55296	1	12400	12400		82.305	5.5309	1	1548300	+		72353	27471	50720	50802	79082	79082					0.09233297579316968
SILSFMRHKTK	11	Unmodified	_SILSFMRHKTK_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|127|2|sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|127|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.7412414550781	3	449.923702	1346.74928	-1.3202	-0.00059397	-4.3973	-0.0019785	-5.7175	-0.0025724	449.92159672548644	40.63	0.40359	40.399	40.046	40.45	-0.23029					17	10	2	0	0	0	0.02477	1	3462	3462		12.433	0	1	204400	+		72354	36264	50721	50803	79083	79083					0.08977072262086949
SILSHTRTL	9	Unmodified	_SILSHTRTL_					0	0	0		ENST00000438380.1_1_9:127533958-127535075:+|nuORF	ENST00000438380.1_1_9:127533958-127535075:+|nuORF	ENST00000438380.1_1_9:127533958-127535075:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8046264648438	2	514.298373	1026.58219	-0.0077094	-3.9649E-06	2.4906	0.0012809	2.4829	0.0012769	514.2980225213925	58.466	1.0587	58.557	58.188	59.246	0.091217					39	28	2	0	0	0	0.024261	1	6496	6496		45.972	0	1	1907700			72355	14309	50722	50804	79084	79084					0.0699654770885445
SILSILTLI	9	Unmodified	_SILSILTLI_					0	0	0		nc|ENSG00000131779|O96011-2|PEX11B;ENSG00000131779|ENST00000369306|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.8365783691406	2	486.820618	971.626684	-0.26611	-0.00012955	2.0076	0.00097735	1.7415	0.0008478	486.8214927812435	33.965	0.35225	33.758	33.472	33.824	-0.20696					10	8	2	0	0	0	0.024436	1	2454	2454		30.504	0	1	52377			72356	4550	50723	50805	79085	79085					0.13973558802342723
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.27728271484375	2	506.277106	1010.53966	-0.44449	-0.00022503	0.53243	0.00026956	0.087944	4.4524E-05	506.27711711354203	57.195	0.75737	57.195	56.809	57.567	0					69	20	4	0	0	0	0.079716	2	6411	6411;6422		117.81	32.896	1	5198600			72357	7358	50724	50806	79086;79087	79086					0.034811525806162535
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.27691650390625	2	506.277106	1010.53966	0.15079	7.6343E-05	-0.17271	-8.744E-05	-0.021918	-1.1097E-05	506.2767570670643	57.299	0.80579	57.134	56.813	57.619	-0.16431					65	21	4	0	0	0	0.15388	1	6406	6406		98.582	2.7668	1	4502600			72358	7358	50724	50806	79088	79088					0.034811525806162535
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.27752685546875	2	506.277106	1010.53966	-0.16332	-8.2686E-05	-0.050853	-2.5746E-05	-0.21417	-0.00010843	506.2769992879447	56.866	0.8506	56.961	56.578	57.429	0.095306					43	23	2	0	0	0	0.079716	1	6306	6306		117.81	35.571	1	5336700			72359	7358	50724	50806	79089	79089					0.034811525806162535
SILSQIQL	8	Unmodified	_SILSQIQL_					0	0	0			REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7608947753906	2	451.271293	900.528032	-0.77616	-0.00035026	2.3189	0.0010465	1.5427	0.0006962	451.2722858651663	38.228	0.56202	38.228	38.199	38.761	0					19	14	2	0	0	0	0.027866	1	3259	3259		30.504	0	1	2528100	+		72360	33536	50725	50807	79090	79090					0.07378955557294375
SILSSLTSV	9	Unmodified	_SILSSLTSV_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	453.76141357421875	2	453.760758	905.506963	-0.551	-0.00025002	0.80817	0.00036672	0.25717	0.00011669	453.7609279700233	81.269	0.80095	81.293	80.775	81.576	0.023911					39	19	3	0	0	0	0.16468	1	10051	10051		96.19	5.4138	1	535040			72361	7039	50726	50808	79091	79091					0.0504294545777384
SILTPVSPPAP	11	Unmodified	_SILTPVSPPAP_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7639770507812	2	539.810782	1077.60701	-0.15499	-8.3665E-05	0.94887	0.00051221	0.79388	0.00042855	539.810995946712	49.849	1.0229	49.743	49.142	50.165	-0.10558					54	26	3	0	0	0	0.024752	1	5082	5082		25.574	0	1	647390	+		72362	19204	50727	50809	79092	79092					0.0713118279156788
SILTRKKPA	9	Unmodified	_SILTRKKPA_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.29022216796875	2	507.326934	1012.63931	-0.75945	-0.00038529	-0.081793	-4.1496E-05	-0.84124	-0.00042679	507.3267141416922	43.528	0.54506	43.387	43.098	43.643	-0.14137					25	14	3	0	0	0	0.024436	1	4103	4103		38.806	5.9937	1	226580			72363	9402	50728	50810	79093	79093					0.1335001498522388
SILTRLRTV	9	Unmodified	_SILTRLRTV_					0	0	0			REV__ENST00000513166.1_1_5:176514597-176516637:+|nuORF	REV__ENST00000513166.1_1_5:176514597-176516637:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.8200073242188	2	529.837665	1057.66078	-0.026635	-1.4112E-05	0.58422	0.00030954	0.55759	0.00029543	529.8376621192759	19.764	0.24547	19.603	19.48	19.725	-0.16079					7	4	2	0	0	0	0.024495	1	456	456		34.173	1.3601	1	30376	+		72364	34148	50729	50811	79094	79094					0.13425400013920807
SILVRFPK	8	Unmodified	_SILVRFPK_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2829284667969	2	480.30547	958.596387	0.81274	0.00039036	2.5569	0.0012281	3.3697	0.0016185	480.30657453637383	51.542	1.4335	51.424	50.927	52.361	-0.11875					58	37	2	0	0	0	0.027866	1	5318	5318		57.811	24.296	1	362720	+		72365	24143	50730	50812	79095	79095					0.11543244927804608
SILVRFPK	8	Unmodified	_SILVRFPK_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.283203125	2	480.30547	958.596387	0.95735	0.00045982	2.1204	0.0010184	3.0778	0.0014783	480.3063579625494	51.657	1.7322	51.473	50.904	52.637	-0.18404					62	44	2	0	0	0	0.027866	1	5340	5340		37.159	5.2042	1	308110	+		72366	24143	50730	50812	79096	79096					0.11543244927804608
SILVVAWIL	9	Unmodified	_SILVVAWIL_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.78448486328125	2	507.323328	1012.6321	0.051778	2.6268E-05	-3.0599	-0.0015523	-3.0081	-0.0015261	507.3216352947431	72.487	0.56934	72.487	72.17	72.74	0					27	13	3	0	0	0	0.024325	1	8852	8852		17.365	0	1	200950	+		72367	36956	50731	50813	79097	79097					0.1262928238479617
SILVVAWIL	9	Unmodified	_SILVVAWIL_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7845458984375	2	507.323328	1012.6321	0.58492	0.00029674	-4.0362	-0.0020477	-3.4513	-0.0017509	507.32121242210025	72.472	0.44522	72.482	72.29	72.736	0.0097733					25	10	4	0	0	0	0.024487	1	8774	8774		40.573	13.777	1	305940	+		72368	36956	50731	50813	79098	79098					0.1262928238479617
SILWQAEQP	9	Unmodified	_SILWQAEQP_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2367553710938	2	536.277106	1070.53966	-1.0438	-0.00055975	-0.054311	-2.9126E-05	-1.0981	-0.00058888	536.2766395707672	69.159	0.33757	68.897	68.747	69.084	-0.26166					13	7	2	0	0	0	0.024367	1	8019	8019		44.377	1.5129	1	85090			72369	4025	50732	50814	79099	79099					0.007211525806042118
SILWVVTI	8	Unmodified	_SILWVVTI_					0	0	0			REV__ENSG00000135914|ENST00000258400|HTR2B	REV__ENSG00000135914|ENST00000258400|HTR2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.21990966796875	2	465.786579	929.558604	-0.47694	-0.00022215	-3.9597	-0.0018444	-4.4367	-0.0020665	465.7845203990048	34.081	0.31519	34.081	33.894	34.209	0					11	7	2	0	0	0	0.027866	1	2502	2502		52.299	7.7681	1	99468	+		72370	23595	50733	50815	79100	79100					0.09100733942329953
SIMEILCKF	9	Unmodified	_SIMEILCKF_					0	0	0		ENST00000393593.7_1_4:185309154-185309298:-|nuORF	ENST00000393593.7_1_4:185309154-185309298:-|nuORF	ENST00000393593.7_1_4:185309154-185309298:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.282470703125	2	542.282489	1082.55042	-0.79107	-0.00042899	0.92413	0.00050114	0.13306	7.2155E-05	542.2829168601154	52.206	1.2024	52.022	51.634	52.836	-0.18405					66	28	4	0	0	0	0.50848	1	5418	5418		58.782	0	1	5207400			72371	13454	50734	50816	79101	79101					0.012450956390239298
SIMKEKENL	9	Unmodified	_SIMKEKENL_					0	0	0			REV__nc|ENSG00000137807|Q02241-2|KIF23	REV__nc|ENSG00000137807|Q02241-2|KIF23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2900390625	2	546.291899	1090.56925	0.15243	8.3273E-05	-3.2844	-0.0017942	-3.132	-0.001711	546.2901128952682	97.301	1.5594	97.301	96.793	98.353	-3.8147E-05					86	35	4	0	0	0	0.16468	1	12371	12371		96.19	0.37527	1	1708600	+		72372	19377	50735	50817	79102	79102					0.027583485344621295
SIMLPCIKSV	10	Unmodified	_SIMLPCIKSV_					0	0	0			REV__nc|ENSG00000112130|O76064-2|RNF8	REV__nc|ENSG00000112130|O76064-2|RNF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8341674804688	2	545.803588	1089.59262	-0.47383	-0.00025862	1.0607	0.00057894	0.58689	0.00032033	545.8041049153328	49.282	0.53246	49.1	48.773	49.305	-0.18206					32	13	3	0	0	0	0.03519	1	4889	4889		60.118	8.9256	1	828060	+		72373	21969	50736	50818	79103	79103					0.051410710474101506
SIMSEPIRV	9	Unmodified	_SIMSEPIRV_					0	0	0		ENST00000485155.1_1_2:63816129-63821744:+|nuORF;ENST00000485781.5_1_2:63816129-63824744:+|nuORF	ENST00000485155.1_1_2:63816129-63821744:+|nuORF	ENST00000485155.1_1_2:63816129-63821744:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8186645507812	2	516.281334	1030.54812	-0.8307	-0.00042888	-4.0045	-0.0020675	-4.8352	-0.0024963	516.280036736403	21.79	0.58127	21.577	21.216	21.798	-0.2128					16	11	3	0	0	0	0.024381	1	673	673		45.952	18.07	1	26990			72374	15322	50737	50819	79104	79104					0.03406383225592435
SINAETVID	9	Unmodified	_SINAETVID_					0	0	0			REV__ENSG00000075073|ENST00000373306|TACR2	REV__ENSG00000075073|ENST00000373306|TACR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.73291015625	2	481.245472	960.476391	0.38519	0.00018537	-0.13091	-6.3E-05	0.25428	0.00012237	481.24587225881425	57.317	0.69457	57.149	56.81	57.504	-0.16762					41	18	3	0	0	0	0.024205	1	6457	6457		44.117	0	1	303060	+		72375	20538	50738	50820	79105	79105					-0.0054283292729451205
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.772216796875	2	493.772522	985.530492	-0.37901	-0.00018715	-0.66485	-0.00032828	-1.0439	-0.00051543	493.77219965838935	33.192	0.8348	33.192	32.865	33.7	0					54	22	3	0	0	0	0.10174	5	2349	2349;2358;2369;2381;2396		110.12	24.959	1	9092300			72376	6362	50739	50821	79106;79107;79108;79109;79110	79106					0.03714804014953188
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7720947265625	2	493.772522	985.530492	-0.67456	-0.00033308	-0.43582	-0.0002152	-1.1104	-0.00054828	493.77229065263055	33.028	0.75871	33.035	32.776	33.534	0.0066261					48	20	3	0	0	0	0.03849	4	2323	2315;2323;2335;2350		134.81	41.615	1	8899800			72377	6362	50739	50821	79111;79112;79113;79114	79112					0.03714804014953188
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7719421386719	2	493.772522	985.530492	0.25808	0.00012743	-1.4168	-0.00069959	-1.1588	-0.00057216	493.7718203994205	32.88	0.85462	32.943	32.69	33.544	0.062885					45	22	3	0	0	0	0.077175	3	2278	2255;2278;2291		118.74	25.548	1	8593700			72378	6362	50739	50821	79115;79116;79117	79116					0.03714804014953188
SINARLFLL	9	Unmodified	_SINARLFLL_					0	0	0			REV__ENSG00000154143|ENST00000284288|PANX3	REV__ENSG00000154143|ENST00000284288|PANX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3069458007812	2	523.821484	1045.62842	0.48878	0.00025603	-1.4588	-0.00076416	-0.97005	-0.00050813	523.82061946753	71.476	0.39238	71.187	70.998	71.39	-0.28857					15	9	2	0	0	0	0.024374	1	8649	8649		40.778	10.937	1	291040	+		72379	24940	50740	50822	79118	79118					0.1074261261094307
SINDFKVL	8	Unmodified	_SINDFKVL_					0	0	0		ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.26300048828125	2	468.263468	934.512382	-0.65233	-0.00030546	0.030277	1.4178E-05	-0.62205	-0.00029129	468.26334265396395	43.685	0.81184	43.448	43.099	43.911	-0.23737					49	21	3	0	0	0	0.77775	1	4033	4033		60.972	0.67798	1	5523700			72380	8232	50741	50823	79119	79119					0.04250669040231969
SINGLLAVAIL	11	Unmodified	_SINGLLAVAIL_					0	0	0			REV__ENSG00000213699|ENST00000344420|SLC35F6	REV__ENSG00000213699|ENST00000344420|SLC35F6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3195190429688	2	542.342249	1082.66995	0.61471	0.00033338	-1.3805	-0.00074871	-0.7658	-0.00041532	542.3412746108683	59.797	0.46755	59.797	59.598	60.066	0					20	12	2	0	0	0	0.024736	1	6824	6824		36.447	28.212	1	207490	+		72381	28748	50742	50824	79120	79120					0.1319174857960661
SINKAQEYKR	10	Unmodified	_SINKAQEYKR_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.89471435546875	3	412.894688	1235.66223	-0.37808	-0.00015611	0.066121	2.7301E-05	-0.31196	-0.00012881	412.8946700593217	30.513	1.0468	30.269	29.905	30.951	-0.24415					74	24	5	0	0	0	0.96069	1	1951	1951		50.034	2.8058	1	2205600	+		72382	23588	50743	50825	79121	79121					0.05382989312010977
SINKAQEYKR	10	Unmodified	_SINKAQEYKR_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.8947448730469	3	412.894688	1235.66223	-0.68787	-0.00028402	0.41577	0.00017167	-0.2721	-0.00011235	412.8948360454392	30.402	0.88356	30.224	29.866	30.75	-0.17818					68	20	5	0	0	0	0.99077	2	1938	1938;1949		47.228	9.6278	1	2454100	+		72383	23588	50743	50825	79122;79123	79122					0.05382989312010977
SINKAQEYKR	10	Unmodified	_SINKAQEYKR_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	412.894688	1235.66223	-0.68787	-0.00028402	0.41577	0.00017167	-0.2721	-0.00011235	412.8948360454392	30.402	0.88356	30.224	29.866	30.75	-0.17818	-0.033522	0.00061035	NaN	50.034	68	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2454100	+		72384	23588	50743	50825							0.05382989312010977
SINKKLSQ	8	Unmodified	_SINKKLSQ_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2;REV__CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.22515869140625	2	459.274367	916.53418	-0.61896	-0.00028427	0.50906	0.0002338	-0.10989	-5.0471E-05	459.27415680151455	26.205	0.3782	25.969	25.72	26.098	-0.23603					28	10	4	0	0	0	0.027866	1	1331	1331		60.972	0	1	3070600	+		72385	22403;19252	50744	50826	79124	79124					0.07257473788797597
SINLPLTVSGG	11	Unmodified	_SINLPLTVSGG_					0	0	0			REV__nc|ENSG00000122224|Q9HBG7-3|LY9;REV__ENST00000471816.1_1_1:160766002-160783471:+|nuORF	REV__nc|ENSG00000122224|Q9HBG7-3|LY9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.7876586914062	2	529.298039	1056.58152	-0.77065	-0.0004079	-0.83744	-0.00044326	-1.6081	-0.00085116	529.297329750578	51.968	1.5576	52.06	51.344	52.902	0.091942					86	37	4	0	0	0	0.96309	1	5528	5528		45.022	7.2107	1	8195200	+		72386	22633;33184	50745	50827	79125	79125					0.0554970826913177
SINLVSHSM	9	Unmodified	_SINLVSHSM_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF;ENST00000487188.1_1_1:12371595-12395946:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2497253417969	2	494.250034	986.485516	-0.38157	-0.00018859	0.10165	5.024E-05	-0.27992	-0.00013835	494.2499303894373	44.832	0.79963	44.832	44.348	45.147	0					42	22	3	0	0	0	0.39228	1	4313	4313		66.429	0	1	2476500			72387	1119	50746	50828	79126	79126					-0.008267628425869589
SINYFIEF	8	Unmodified	_SINYFIEF_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7870483398438	2	516.755475	1031.4964	0.6879	0.00035547	-4.4134	-0.0022806	-3.7255	-0.0019252	517.2549989168011	59.578	0.51891	59.381	59.132	59.651	-0.19742					21	12	2	0	0	0	0.027866	1	6596	6596		24.203	0	1	269630	+		72388	20134	50747	50829	79127	79127					-0.018090371966536622
SIPAGFHDL	9	Unmodified	_SIPAGFHDL_					0	0	0		nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1;nc|ENSG00000124782|Q92766-6|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	nc|ENSG00000124782|Q92766-5|RREB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30047607421875	2	478.745442	955.476331	0.054537	2.6109E-05	0.23541	0.0001127	0.28995	0.00013881	478.7455247882999	65.504	0.5377	65.541	65.321	65.859	0.037384					22	14	2	0	0	0	0.024	1	7694	7694		45.952	5.3793	1	265260			72389	4074	50748	50830	79128	79128					-0.003187881366329748
SIPASFPEHPA	11	Unmodified	_SIPASFPEHPA_					0	0	0		ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-2|RTN3	ENSG00000133318|ENST00000377819|RTN3	ENSG00000133318|ENST00000377819|RTN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.2691650390625	2	576.787838	1151.56112	-0.48961	-0.0002824	1.8263	0.0010534	1.3367	0.00077101	576.7885565894892	63.504	0.49983	63.312	63.029	63.529	-0.19243					17	12	2	0	0	0	0.024752	1	7193	7193		32.812	9.7699	1	150980			72390	4703	50749	50831	79129	79129					-0.008594623906674315
SIPENKESN	9	Unmodified	_SIPENKESN_					0	0	0			REV__ENST00000495088.1_1_3:72821852-72822317:+|nuORF	REV__ENST00000495088.1_1_3:72821852-72822317:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	509.246003	1016.47745	-0.57992	-0.00029532	-4.1346	-0.0021055	-4.7146	-0.0024009	509.7448384725262	22.673	0.5113	22.673	22.291	22.803	0					14	10	2	0	0	0	0.023655	1	803	803		79.713	5.4575	1	21770	+		72391	33791	50750	50832	79130	79130					-0.030126185583753795
SIPHRFCKN	9	Unmodified	_SIPHRFCKN_					0	0	0			REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2999877929688	2	551.284743	1100.55493	-1.2823	-0.00070693	1.3082	0.00072121	0.025908	1.4283E-05	551.2854107816422	26.934	0.78888	27.015	26.456	27.245	0.081293					46	19	3	0	0	0	0.024381	1	1296	1296		45.952	3.5558	1	1509500	+		72392	19227	50751	50833	79131	79131					0.008677408968196687
SIPKAAVRFG	10	Unmodified	_SIPKAAVRFG_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2689819335938	2	523.311284	1044.60801	-0.34346	-0.00017974	0.44655	0.00023369	0.10309	5.395E-05	523.3121547671685	42.119	0.16777	41.887	41.803	41.971	-0.23186					6	4	2	0	0	0	0.03519	1	3766	3766		14.137	3.2716	1	60271			72393	2127	50752	50834	79132	79132					0.08749441951113113
SIPKAAVRFG	10	Unmodified	_SIPKAAVRFG_					0	0	0		ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	ENSG00000100075|ENST00000215882|SLC25A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.311284	1044.60801	-0.031964	-1.6727E-05	-1.7244	-0.00090242	-1.7564	-0.00091914	523.3099269530936	41.546	0.48859	41.569	41.254	41.743	0.023006	-0.15858	-0.0020898	NaN	18.262	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130340			72394	2127	50752	50834							0.08749441951113113
SIPKFPVN	8	Unmodified	_SIPKFPVN_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7790222167969	2	451.260728	900.506903	0.85164	0.00038431	-0.66635	-0.0003007	0.18528	8.3611E-05	451.2601927192417	54.711	0.63361	54.504	54.197	54.831	-0.20613					33	16	3	0	0	0	0.027866	1	5779	5779		71.296	37.123	1	282370			72395	7237	50753	50835	79133	79133					0.05266990248424008
SIPLRLKVQ	9	Unmodified	_SIPLRLKVQ_					0	0	0			REV__PIK3R3-ZSWIM5|1|fusion	REV__PIK3R3-ZSWIM5|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.271240234375	2	527.342584	1052.67061	0.10605	5.5923E-05	-0.85766	-0.00045228	-0.75162	-0.00039636	527.3419133689392	47.547	0.51194	47.36	47.123	47.635	-0.18684					24	13	2	0	0	0	0.024541	1	4619	4619		10.866	0	1	379570	+		72396	25437	50754	50836	79134	79134					0.1463858801932929
SIPLRRQVS	9	Unmodified	_SIPLRRQVS_					0	0	0		nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-11|FGFR1;nc|ENSG00000077782|P11362-13|FGFR1	nc|ENSG00000077782|P11362-2|FGFR1	nc|ENSG00000077782|P11362-2|FGFR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2488403320312	2	528.31964	1054.62473	-0.29238	-0.00015447	-0.51322	-0.00027114	-0.8056	-0.00042562	528.3194865743687	32.614	0.53064	32.377	32.216	32.746	-0.23667					21	12	2	0	0	0	0.018983	1	2290	2290		129.68	12.779	1	103050			72397	18086	50755	50837	79135	79135					0.09959942837076596
SIPLVNKLT	9	Unmodified	_SIPLVNKLT_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT;ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.3110656738281	2	492.808042	983.601532	-0.76948	-0.00037921	-1.2325	-0.00060741	-2.002	-0.00098662	492.80702360416393	62.146	0.42191	61.969	61.843	62.265	-0.17782					20	10	3	0	0	0	0.024405	1	6973	6973		20.947	0	1	269290			72398	9647	50756	50838	79136	79136					0.10907503999737855
SIPLVNKLT	9	Unmodified	_SIPLVNKLT_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT;ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.808042	983.601532	-0.61601	-0.00030358	-1.5113	-0.00074478	-2.1273	-0.0010484	492.80683005588673	62.237	0.39088	62.024	61.892	62.283	-0.21375	-0.068677	0.0038303	NaN	9.7057	20	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305100			72399	9647	50756	50838							0.10907503999737855
SIPLVNKLT	9	Unmodified	_SIPLVNKLT_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT;ENST00000461652.2_1_13:31835091-31857210:+|nuORF	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.808042	983.601532	-0.25424	-0.00012529	-6.1891	-0.00305	-6.4433	-0.0031753	492.8041129855434	62.543	0.47095	62.285	61.897	62.368	-0.25824	0.19241	-0.00078016	NaN	9.7057	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463180			72400	9647	50756	50838							0.10907503999737855
SIPNRDENY	9	Unmodified	_SIPNRDENY_					0	0	0			REV__ENSG00000124157|ENST00000372769|SEMG2	REV__ENSG00000124157|ENST00000372769|SEMG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8126220703125	2	554.256902	1106.49925	0.62137	0.0003444	2.0227	0.0011211	2.6441	0.0014655	554.2576269105233	51.049	0.53664	50.938	50.712	51.249	-0.11163					17	13	2	0	0	0	0.024506	1	5234	5234		30.504	2.6214	1	251140	+		72401	22738	50757	50839	79137	79137					-0.049738138098064155
SIPRPPALCSV	11	Unmodified	_SIPRPPALCSV_					0	0	0		ENST00000591299.1_2_22:17082945-17094937:+|nuORF	ENST00000591299.1_2_22:17082945-17094937:+|nuORF	ENST00000591299.1_2_22:17082945-17094937:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.3147583007812	2	570.315709	1138.61686	-0.047186	-2.6911E-05	-3.1708	-0.0018083	-3.218	-0.0018353	570.3139451082517	73.022	0.6297	72.757	72.469	73.099	-0.26479					29	14	3	0	0	0	0.99147	1	8583	8583		38.714	0.90257	1	676740			72402	17350	50758	50840	79138	79138					0.053100475252676915
SIPSGLTKVI	10	Unmodified	_SIPSGLTKVI_					0	0	0		CON__P17697	CON__P17697	CON__P17697	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7872009277344	2	507.813325	1013.6121	0.22764	0.0001156	-0.037008	-1.8793E-05	0.19063	9.6807E-05	507.8130784205371	71.914	0.6909	71.914	71.642	72.333	0					39	17	3	0	0	0	0.03519	1	8723	8723		64.207	10.856	1	1492100		+	72403	523	50759	50841	79139	79139					0.10583486654184071
SIPVMVVTLDP	11	Unmodified	_SIPVMVVTLDP_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.7693481445312	2	585.825575	1169.6366	-0.537	-0.00031459	-4.2237	-0.0024744	-4.7607	-0.0027889	585.8234752635148	79.713	0.29137	79.494	79.285	79.577	-0.21922					10	6	2	0	0	0	0.024768	1	9537	9537		31.53	0	1	53325			72404	9097	50760	50842	79140	79140					0.058563787453977056
SIPVTKTPLPK	11	Unmodified	_SIPVTKTPLPK_					0	0	0		nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4;ENSG00000127249|ENST00000342695|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	nc|ENSG00000127249|Q4VNC1-3|ATP13A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.8670654296875	2	590.868631	1179.72271	-0.71437	-0.0004221	-3.3233	-0.0019636	-4.0377	-0.0023857	590.8669241812987	102.37	1.1116	102.25	101.89	103	-0.12666					79	26	5	0	0	0	1.0344	1	12757	12757		29.17	1.0886	1	4456200			72405	4232	50761	50843	79141	79141					0.14003706642415636
SIQEVTVSY	9	Unmodified	_SIQEVTVSY_					0	0	0		ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	ENSG00000062370|ENST00000354340|ZNF112	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.8157958984375	2	513.261122	1024.50769	-0.53169	-0.0002729	-0.034505	-1.771E-05	-0.5662	-0.00029061	513.261061557243	45.078	0.46078	44.867	44.595	45.056	-0.21109					29	11	3	0	0	0	0.024319	1	4228	4228		56.721	0	1	897950			72406	1250	50762	50844	79142	79142					-0.0035825989318709617
SIQKQEVC	8	Unmodified	_SIQKQEVC_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7389831542969	2	467.73676	933.458967	-0.14765	-6.9063E-05	3.9244	0.0018356	3.7767	0.0017665	467.73845371690464	26.103	2.2243	25.935	25.544	27.768	-0.16816					126	56	4	0	0	0	0.87148	1	1351	1351		53.351	2.016	1	4720200			72407	4228	50763	50845	79143	79143					-0.010424517339288286
SIQNSSLDL	9	Unmodified	_SIQNSSLDL_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.75250244140625	2	488.750921	975.48729	-1.081	-0.00052834	2.9916	0.0014621	1.9106	0.00093379	488.7522108711188	29.046	2.3518	29.046	26.908	29.26	0					101	59	4	0	0	0	0.42604	1	1754	1754		64.207	0.901	1	2840500	+		72408	23390	50764	50846	79144	79144					-0.0014343055299832486
SIQPTIKR	8	Unmodified	_SIQPTIKR_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.30340576171875	2	471.790184	941.565815	1.2542	0.00059174	-0.97931	-0.00046203	0.27493	0.00012971	471.7895342364575	17.934	0.44689	17.78	17.557	18.004	-0.15403					14	8	3	0	0	0	0.027866	1	239	239		26.693	0	1	119870			72409	10844	50765	50847	79145	79145					0.0926946654275298
SIQRMKAL	8	Unmodified	_SIQRMKAL_					0	0	0		ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;nc|ENSG00000040275|Q96EA4-2|SPDL1	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	473.77886962890625	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.666	1	24.619	24.119	25.119	-0.047148								0	0	0	0.42824	1	1082	1082		63.306	0	1				72410	15756	50766	50848	79146	79146					0.06802124153637124
SIQRPRLLQP	10	Unmodified	_SIQRPRLLQP_					0	0	0		ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.2474670410156	3	403.247173	1206.71969	0.86007	0.00034682	-1.2352	-0.00049809	-0.37512	-0.00015127	403.24679190087267	103.38	1.8075	103.25	102.9	104.71	-0.12724					103	45	4	0	0	0	1.1244	1	12844	12844		23.378	0.81632	1	2106700			72411	14208	50767	50849	79147	79147					0.12459876308275852
SIQRPRLLQP	10	Unmodified	_SIQRPRLLQP_					0	0	0		ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	403.2326354980469	3	403.247173	1206.71969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.452	1	15.244	14.744	15.744	-0.20777								0	0	0	0.77833	1	21	21		7.0187	0.69781	1				72412	14208	50767	50849	79148	79148					0.12459876308275852
SIQRVNKGQ	9	Unmodified	_SIQRVNKGQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.277587890625	2	515.293622	1028.57269	-0.7936	-0.00040894	2.6487	0.0013648	1.8551	0.0009559	515.2946068657507	45.953	0.59388	45.751	45.563	46.157	-0.20226					22	15	2	0	0	0	0.0245	1	4423	4423		16.717	3.2633	1	369600	+		72413	21403	50768	50850	79149	79149					0.05954779423313994
SIQRVNKGQ	9	Unmodified	_SIQRVNKGQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.293622	1028.57269	-0.22157	-0.00011417	2.862	0.0014748	2.6404	0.0013606	515.2948599381957	46.073	0.7936	45.811	45.63	46.423	-0.26118	0.030417	8.0975E-05	NaN	22.58	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267100	+		72414	21403	50768	50850							0.05954779423313994
SIQSCSVVL	9	Unmodified	_SIQSCSVVL_					0	0	0			REV__ENSG00000101337|ENST00000398022|TM9SF4	REV__ENSG00000101337|ENST00000398022|TM9SF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.26934814453125	2	468.24696	934.479368	-0.42756	-0.0002002	1.5857	0.00074248	1.1581	0.00054228	468.24836154743997	43.159	0.18568	43.159	43.075	43.261	0					6	4	2	0	0	0	0.024427	1	4022	4022		26.693	4.733	1	45961	+		72415	21219	50769	50851	79150	79150					0.00950718925878391
SIRAKCTEY	9	Unmodified	_SIRAKCTEY_					0	0	0		ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENSG00000119541|ENST00000238497|VPS4B	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2384033203125	2	535.768591	1069.52263	-0.53325	-0.0002857	-1.1805	-0.00063247	-1.7137	-0.00091817	535.7679732145516	60.521	0.6075	60.315	60.05	60.658	-0.20599					25	14	2	0	0	0	0.024292	1	6762	6762		58.782	2.0609	1	167830			72416	17356	50770	50852	79151	79151					-0.009350912968557168
SIRDKEAR	8	Unmodified	_SIRDKEAR_					0	0	0			REV__ENSG00000110723|ENST00000265843|EXPH5	REV__ENSG00000110723|ENST00000265843|EXPH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2694396972656	2	487.772522	973.530492	-0.013737	-6.7007E-06	-4.2352	-0.0020658	-4.2489	-0.0020725	487.7704391579835	53.681	0.81374	53.681	53.196	54.01	0					47	22	3	0	0	0	0.027866	1	5812	5812		38.806	0	1	2171000	+		72417	21871	50771	50853	79152	79152					0.04266804014935133
SIRKKKSAS	9	Unmodified	_SIRKKKSAS_					0	0	0			REV__ENST00000469840.1_1_2:201399891-201407862:+|nuORF;REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.8136901855469	2	502.81419	1003.61383	0.45345	0.000228	-1.615	-0.00081203	-1.1615	-0.00058403	502.8134358247894	96.092	3.0449	96.098	95.307	98.352	0.0065079					205	70	6	0	0	0	0.87448	1	12208	12208		34.173	8.7224	1	17656000	+		72418	25587;33137	50772	50854	79153	79153					0.11216540462794455
SIRKNHATN	9	Unmodified	_SIRKNHATN_					0	0	0			REV__nc|ENSG00000117751|Q12972-2|PPP1R8	REV__nc|ENSG00000117751|Q12972-2|PPP1R8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7839965820312	2	520.783422	1039.55229	0.26776	0.00013944	1.3048	0.00067949	1.5725	0.00081894	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	0.93097	1	13714	13714		30.318	2.4355	1	6875800	+		72419	22373	50773	50855	79154	79154					0.03409608763513461
SIRKNHATN	9	Unmodified	_SIRKNHATN_					0	0	0			REV__nc|ENSG00000117751|Q12972-2|PPP1R8	REV__nc|ENSG00000117751|Q12972-2|PPP1R8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7842407226562	2	520.783422	1039.55229	-0.95638	-0.00049807	2.3674	0.0012329	1.4111	0.00073486	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	0.97455	1	13295	13295		25.574	0.12388	1	3485700	+		72420	22373	50773	50855	79155	79155					0.03409608763513461
SIRKSRQLRRT	11	Unmodified	_SIRKSRQLRRT_					0	0	0			REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;REV__nc|ENSG00000176406|Q9UQ26-3|RIMS2	REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.6239929199219	3	467.623414	1399.84841	0.72772	0.0003403	0.19557	9.1452E-05	0.92329	0.00043175	467.62340330736504	107.11	0.60897	107.12	106.86	107.47	0.0018311					48	16	4	0	0	0	1.0789	1	13679	13679		17.135	1.214	1	749420	+		72421	27018;36963	50774	50856	79156	79156					0.16448231271192526
SIRLPRWRTLR	11	Unmodified	_SIRLPRWRTLR_					0	0	0		ENSG00000188996|ENST00000380907|HUS1B	ENSG00000188996|ENST00000380907|HUS1B	ENSG00000188996|ENST00000380907|HUS1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.3026123046875	3	485.300271	1452.87898	1.2145	0.00058938	3.452	0.0016753	4.6665	0.0022647	485.30191744492015	17.588	1.2885	17.434	17.159	18.448	-0.15403					66	25	5	0	0	0	1.0764	1	200	200		17.833	7.7292	1	454660			72422	9776	50775	50857	79157	79157					0.17066009656241476
SIRNKLILIAR	11	Unmodified	_SIRNKLILIAR_					0	0	0		ENST00000566590.5_1_16:8807641-8875284:+|nuORF;ENSG00000183044|ENST00000268251|ABAT	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENST00000566590.5_1_16:8807641-8875284:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.25738525390625	3	432.95399	1295.84014	0.072516	3.1396E-05	2.1126	0.00091467	2.1851	0.00094606	433.28901736892135	102.72	0.46747	102.73	102.54	103.01	0.0054245					16	11	2	0	0	0	0.024789	1	13102	13102		11.455	0	1	428770			72423	9190	50776	50858	79158	79158					0.2040528430188715
SIRNNSLDI	9	Unmodified	_SIRNNSLDI_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2;REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.3079223632812	2	516.277638	1030.54072	-0.4623	-0.00023868	3.972	0.0020506	3.5097	0.001812	516.2794865944952	46.7	0.68667	46.506	46.273	46.959	-0.19387					36	19	2	0	0	0	0.023007	1	4471	4471		56.721	18.91	1	1281100	+		72424	24384;34083	50777	50859	79159	79159					0.026673669495039576
SIRNNSLDI	9	Unmodified	_SIRNNSLDI_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2;REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.277638	1030.54072	-0.14502	-7.4868E-05	3.6383	0.0018784	3.4933	0.0018035	516.2793211542868	46.65	0.80247	46.65	46.378	47.181	0	0.086588	-0.00030649	NaN	56.721	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1804700	+		72425	24384;34083	50777	50859							0.026673669495039576
SIRNNSLDI	9	Unmodified	_SIRNNSLDI_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2;REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.277638	1030.54072	-0.47913	-0.00024737	4.1572	0.0021463	3.6781	0.0018989	516.2796268558373	46.719	0.88855	46.566	46.342	47.231	-0.15301	0.0031841	0.00022932	NaN	56.721	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1745900	+		72426	24384;34083	50777	50859							0.026673669495039576
SIRQSAHACF	10	Unmodified	_SIRQSAHACF_					0	0	0			REV__ENSG00000076382|ENST00000321765|SPAG5	REV__ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.2716064453125	2	560.271832	1118.52911	-1.4366	-0.0008049	0.73364	0.00041104	-0.703	-0.00039387	560.2720828839263	93.169	2.1026	93.029	92.532	94.635	-0.13995					94	48	4	0	0	0	0.45367	1	11463	11463		93.195	2.8256	1	1688800	+		72427	20568	50778	50860	79160	79160					-0.02541153345487146
SIRRISLD	8	Unmodified	_SIRRISLD_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.28839111328125	2	480.285266	958.555979	1.125	0.00054034	4.0226	0.001932	5.1476	0.0024723	480.287458687791	65.777	0.72943	65.777	65.494	66.224	0					61	18	4	0	0	0	0.80469	1	7795	7795		58.782	2.0609	1	6733900			72428	4809	50779	50861	79161	79161					0.0750427853738529
SIRRKLQPSA	10	Unmodified	_SIRRKLQPSA_					0	0	0		nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-5|KIFC3	nc|ENSG00000140859|Q9BVG8-5|KIFC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.3063354492188	2	578.351471	1154.68839	-1.6306	-0.00094307	4.0654	0.0023512	2.4348	0.0014082	578.3530629158885	75.944	0.15137	75.944	75.881	76.032	0					5	3	2	0	0	0	0.03519	1	9347	9347		17.468	3.3309	1	119160			72429	5449	50780	50862	79162	79162					0.11723303274175123
SIRRLCVTQ	9	Unmodified	_SIRRLCVTQ_					0	0	0			REV__ENST00000445586.1_1_X:48365300-48367200:-|nuORF	REV__ENST00000445586.1_1_X:48365300-48367200:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.31982421875	2	538.305675	1074.5968	0.71899	0.00038703	4.2058	0.002264	4.9248	0.0026511	538.3082008578607	19.999	0.33921	19.799	19.603	19.943	-0.2001					9	6	2	0	0	0	0.024541	1	491	491		21.686	2.5822	1	10305	+		72430	32616	50781	50863	79163	79163					0.0624829658534054
SIRSFKTIL	9	Unmodified	_SIRSFKTIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.8092041015625	2	532.826766	1063.63898	-1.0529	-0.000561	-3.5897	-0.0019127	-4.6425	-0.0024737	533.3284782196623	46.02	0.18562	45.818	45.744	45.93	-0.20226					7	4	2	0	0	0	0.024017	1	4414	4414		47.96	0	1	286910			72431	7168	50782	50864	79164	79164					0.10970595265393968
SIRSGIPCLV	10	Unmodified	_SIRSGIPCLV_					0	0	0		ENST00000519094.5_1_8:42196130-42196735:+|nuORF	ENST00000519094.5_1_8:42196130-42196735:+|nuORF	ENST00000519094.5_1_8:42196130-42196735:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7583618164062	2	522.797152	1043.57975	-0.65301	-0.00034139	-0.31983	-0.00016721	-0.97284	-0.0005086	522.7967447078128	41.023	0.95235	40.888	40.381	41.334	-0.13553					40	24	2	0	0	0	0.03519	1	3612	3612		51.335	15.717	1	322960			72432	15943	50783	50865	79165	79165					0.05970375979518394
SIRSVLLTL	9	Unmodified	_SIRSVLLTL_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.32098388671875	2	501.321317	1000.62808	0.20013	0.00010033	-0.4236	-0.00021236	-0.22346	-0.00011203	501.3209698976432	63.305	1.3681	63.305	63.054	64.422	0					93	37	4	0	0	0	0.32811	1	7389	7389		71.877	3.0906	1	7214800	+		72433	20113	50784	50866	79166	79166					0.1277919289109377
SIRSVLLTL	9	Unmodified	_SIRSVLLTL_					0	0	0			REV__nc|ENSG00000044459|Q9NXG0|CNTLN	REV__nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.32122802734375	2	501.321317	1000.62808	1.4789	0.00074142	-1.8366	-0.00092075	-0.3577	-0.00017932	501.32030039212464	63.302	1.4414	63.356	63.054	64.495	0.054104					103	38	4	0	0	0	0.26966	1	7309	7309		79.713	0.26157	1	7635000	+		72434	20113	50784	50866	79167	79167					0.1277919289109377
SIRVVQTID	9	Unmodified	_SIRVVQTID_					0	0	0			REV__OR4M1|p.A188S|1|0.07|ENSG00000176299|chr14:19780884-19780884|G/T|missense_variant	REV__OR4M1|p.A188S|1|0.07|ENSG00000176299|chr14:19780884-19780884|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2757568359375	2	515.798206	1029.58186	0.57184	0.00029495	3.2245	0.0016632	3.7964	0.0019582	515.7998638556747	88.937	0.46274	88.915	88.694	89.157	-0.021645					16	10	2	0	0	0	0.024418	1	11173	11173		37.812	0	1	169520	+		72435	37315	50785	50867	79168	79168					0.06825127989009161
SIRYLDMTD	9	Unmodified	_SIRYLDMTD_					0	0	0		nc|ENSG00000183580|Q9UJT9-2|FBXL7;FBXL7|p.G445Afs*15|1|0.42|ENSG00000183580|chr5:15937042-15937042|G/-|frameshift_variant;ENSG00000183580|ENST00000504595|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3080444335938	2	557.265881	1112.51721	0.4408	0.00024564	2.6549	0.0014795	3.0957	0.0017251	557.2671504533298	63.466	0.33025	63.466	63.265	63.595	0					13	8	2	0	0	0	0.024457	1	7437	7437		10.265	0.5596	1	153890			72436	9247	50786	50868	79169	79169					-0.03454814879319201
SIRYLDMTD	9	Unmodified	_SIRYLDMTD_					0	0	0		nc|ENSG00000183580|Q9UJT9-2|FBXL7;FBXL7|p.G445Afs*15|1|0.42|ENSG00000183580|chr5:15937042-15937042|G/-|frameshift_variant;ENSG00000183580|ENST00000504595|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.265881	1112.51721	-0.20942	-0.0001167	1.8173	0.0010127	1.6079	0.00089601	557.267548783092	63.699	0.6181	63.447	62.935	63.553	-0.25141	-0.01666	-0.00028286	NaN	15.642	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235560			72437	9247	50786	50868							-0.03454814879319201
SIRYLDMTD	9	Unmodified	_SIRYLDMTD_					0	0	0		nc|ENSG00000183580|Q9UJT9-2|FBXL7;FBXL7|p.G445Afs*15|1|0.42|ENSG00000183580|chr5:15937042-15937042|G/-|frameshift_variant;ENSG00000183580|ENST00000504595|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	nc|ENSG00000183580|Q9UJT9-2|FBXL7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.265881	1112.51721	1.6518	0.00092049	1.4003	0.00078033	3.0521	0.0017008	557.2661540477019	63.424	0.68111	63.479	63.016	63.697	0.054104	0.014507	-0.00074761	NaN	15.642	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183950			72438	9247	50786	50868							-0.03454814879319201
SISCADIFAQ	10	Unmodified	_SISCADIFAQ_					0	0	0			REV__ENSG00000004399|ENST00000324093|PLXND1;REV__ENST00000504524.5_1_3:129275157-129277480:-|nuORF	REV__ENST00000504524.5_1_3:129275157-129277480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2734985351562	2	527.747324	1053.4801	-0.68441	-0.0003612	0.76568	0.00040409	0.081272	4.2891E-05	527.7465961589182	93.002	0.25626	92.998	92.776	93.032	-0.0042038					6	5	2	0	0	0	0.03519	1	11755	11755		30.318	1.1477	1	25209	+		72439	19777;33985	50787	50869	79170	79170					-0.04450486425071176
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	OPSCC_39_ClassI_Rep-1	1	466.2566833496094	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.67	1	73.67	73.17	74.17	0								0	0	0	0.0046436	1	9002	9002		176.41	42.598	1				72440	6383	50788	50870	79171	79171					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	OPSCC_39_ClassI_Rep-1	1	466.2586975097656	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.735	1	73.735	73.235	74.235	0								0	0	0	4.7388E-06	1	9011	9011		214.25	85.385	1				72441	6383	50788	50870	79172	79172					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	OPSCC_39_ClassI_Rep-1	1	466.2579345703125	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.822	1	73.822	73.322	74.322	0								0	0	0	0.010183	1	9023	9023		166.78	64.009	1				72442	6383	50788	50870	79173	79173					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.25787353515625	2	466.258382	930.502212	0.1887	8.7984E-05	0.18768	8.7505E-05	0.37638	0.00017549	466.2583084954577	74.065	1.0236	73.797	73.502	74.526	-0.26794					31	24	2	0	0	0	0.013995	2	9014	9014;9022		181.81	66.347	1	2887100			72443	6383	50788	50870	79174;79175	79174					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	OPSCC_39_ClassI_Rep-3	3	466.2576599121094	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.645	1	73.655	73.155	74.155	0.0096512								0	0	0	0.014262	1	8922	8922		157.21	41.75	1				72444	6383	50788	50870	79176	79176					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	OPSCC_39_ClassI_Rep-3	3	466.2585754394531	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.718	1	73.728	73.228	74.228	0.0096512								0	0	0	0.012993	1	8932	8932		161.9	46.439	1				72445	6383	50788	50870	79177	79177					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	OPSCC_39_ClassI_Rep-3	3	466.25811767578125	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.785	1	73.794	73.294	74.294	0.0096512								0	0	0	0.01426	1	8941	8941		157.33	49.242	1				72446	6383	50788	50870	79178	79178					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MSMS	OPSCC_39_ClassI_Rep-3	3	466.2581787109375	2	466.258382	930.502212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.865	1	73.875	73.375	74.375	0.0096512								0	0	0	0.096542	1	8952	8952		93.195	34.414	1				72447	6383	50788	50870	79179	79179					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2576599121094	2	466.258382	930.502212	0.094709	4.4159E-05	0.48376	0.00022556	0.57847	0.00026972	466.25834634694183	74.118	1.0745	73.841	73.522	74.596	-0.2769					39	29	2	0	0	0	0.016146	3	8723	8711;8723;8732		197.6	59.358	1	1789800			72448	6383	50788	50870	79180;79181;79182	79181					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.2586364746094	2	466.258382	930.502212	0.1073	5.0028E-05	0.25152	0.00011727	0.35882	0.0001673	466.25838007436397	74.044	1.1234	73.779	73.485	74.608	-0.26479					37	28	2	0	0	0	0.012965	1	8730	8730		172.03	47.437	1	1723200			72449	6383	50788	50870	79183	79183					0.034180613149942474
SISDVIAQV	9	Unmodified	_SISDVIAQV_					0	0	0		ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2591247558594	2	466.258382	930.502212	0.030703	1.4315E-05	0.16885	7.873E-05	0.19956	9.3045E-05	466.2582885805355	73.926	1.0301	73.736	73.396	74.426	-0.19027					35	26	2	0	0	0	0.012965	3	8688	8688;8698;8707		187.63	58.772	1	1665200			72450	6383	50788	50870	79184;79185;79186	79184					0.034180613149942474
SISERLQN	8	Unmodified	_SISERLQN_					0	0	0		ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.75360107421875	2	473.751256	945.487959	1.3974	0.00066204	1.9769	0.00093655	3.3743	0.0015986	473.7529676999885	65.846	0.78668	65.846	65.358	66.145	0					58	20	4	0	0	0	0.80469	1	7826	7826		58.782	7.4465	1	897740			72451	3004	50789	50871	79187	79187					0.013034088867129867
SISFLRLW	8	Unmodified	_SISFLRLW_					0	0	0		ENST00000358290.8_1_4:88258257-88258386:-|nuORF	ENST00000358290.8_1_4:88258257-88258386:-|nuORF	ENST00000358290.8_1_4:88258257-88258386:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7533264160156	2	511.295102	1020.57565	-0.37608	-0.00019229	1.015	0.00051895	0.63889	0.00032666	511.2931819297678	45.408	0.6179	45.309	45.048	45.666	-0.099449					31	17	3	0	0	0	0.027866	1	4367	4367		42.474	0	1	867320			72452	12712	50790	50872	79188	79188					0.0661865454811732
SISGSCMWVTQ	11	Unmodified	_SISGSCMWVTQ_					0	0	0		ENST00000530342.2_1_11:67007518-67007740:+|nuORF	ENST00000530342.2_1_11:67007518-67007740:+|nuORF	ENST00000530342.2_1_11:67007518-67007740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.247314453125	3	400.17922	1197.51583	-0.074381	-2.9766E-05	4.4042	0.0017625	4.3298	0.0017327	400.18084054211334	32.958	0.37883	32.964	32.776	33.154	0.0066261					10	9	2	0	0	0	0.024735	1	2297	2297		9.3626	0	1	98673			72453	16232	50791	50873	79189	79189					-0.0750277223971807
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.29754638671875	2	495.297507	988.580462	-0.25367	-0.00012564	-0.56761	-0.00028114	-0.82128	-0.00040678	495.2972281531602	54.538	1.0702	54.538	54.214	55.284	0					125	30	6	0	0	0	0.10795	2	5938	5938;5983		133.81	6.351	1	63653000	+		72454	22004	50792	50874	79190;79191	79190					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2978820800781	2	495.297507	988.580462	-0.047163	-2.336E-05	-0.52597	-0.00026051	-0.57314	-0.00028387	495.29723956209665	54.627	1.0767	54.476	54.156	55.232	-0.15036					123	30	6	0	0	0	0.10795	1	6022	6022		133.81	9.2184	1	63112000	+		72455	22004	50792	50874	79192	79192					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2979736328125	2	495.297507	988.580462	0.71523	0.00035425	-1.4039	-0.00069537	-0.68871	-0.00034112	495.29682218928275	54.345	1.0714	54.444	54.077	55.148	0.098011					121	30	6	0	0	0	0.070102	3	5918	5854;5903;5918		143.11	9.2942	1	81215000	+		72456	22004	50792	50874	79193;79194;79195	79195					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2977600097656	2	495.297507	988.580462	-0.011885	-5.8864E-06	-0.69506	-0.00034426	-0.70694	-0.00035015	495.2971333216574	54.684	1.009	54.453	54.15	55.159	-0.23087					97	28	5	0	0	0	0.30843	1	5797	5797		108.09	3.3409	1	22934000	+		72457	22004	50792	50874	79196	79196					0.08571493900251426
SISHQMVAL	9	Unmodified	_SISHQMVAL_					0	0	0		nc|ENSG00000186047|Q6UYE1-2|DLEU7;ENSG00000186047|ENST00000504404|DLEU7	nc|ENSG00000186047|Q6UYE1-2|DLEU7	nc|ENSG00000186047|Q6UYE1-2|DLEU7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7852783203125	2	493.260402	984.506251	-0.072953	-3.5985E-05	-0.25691	-0.00012673	-0.32987	-0.00016271	493.2602448267468	41.663	0.80704	41.686	41.182	41.99	0.023006					50	22	3	0	0	0	0.024	1	3686	3686		55.504	18.345	1	2573700			72458	9506	50793	50875	79197	79197					0.013378275370541814
SISKARAAR	9	Unmodified	_SISKARAAR_					0	0	0			REV__ENST00000549924.5_1_12:53835576-53837250:+|nuORF	REV__ENST00000549924.5_1_12:53835576-53837250:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.245361328125	2	480.290882	958.567212	-0.96657	-0.00046423	3.1175	0.0014973	2.1509	0.0010331	480.2921595939741	61.32	0.70209	61.143	60.753	61.455	-0.1761					24	16	2	0	0	0	0.024506	1	6809	6809		23.042	9.2672	1	153110	+		72459	32329	50794	50876	79198	79198					0.0862710063150871
SISKGKICSL	10	Unmodified	_SISKGKICSL_					0	0	0		ENSG00000074935|ENST00000368662|TUBE1;ENST00000603621.1_1_6:112405349-112408468:-|nuORF;ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENSG00000074935|ENST00000368662|TUBE1	ENSG00000074935|ENST00000368662|TUBE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2970581054688	2	518.296985	1034.57942	-0.1979	-0.00010257	0.55593	0.00028814	0.35803	0.00018556	518.2973986074476	102.7	2.9604	102.7	101.67	104.63	-0.0046082					228	70	5	0	0	0	0.83673	1	13194	13194		58.23	2.7257	1	70878000			72460	1539	50795	50877	79199	79199					0.06350956259666418
SISKGKICSL	10	Unmodified	_SISKGKICSL_					0	0	0		ENSG00000074935|ENST00000368662|TUBE1;ENST00000603621.1_1_6:112405349-112408468:-|nuORF;ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENSG00000074935|ENST00000368662|TUBE1	ENSG00000074935|ENST00000368662|TUBE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2969360351562	2	518.296985	1034.57942	0.18652	9.6674E-05	0.027463	1.4234E-05	0.21399	0.00011091	518.2968764050886	102.52	1.719	102.39	101.41	103.13	-0.12666					79	41	4	0	0	0	0.66532	1	12733	12733		69.628	0.8408	1	4753000			72461	1539	50795	50877	79200	79200					0.06350956259666418
SISKIKEKEY	10	Unmodified	_SISKIKEKEY_					0	0	0			REV__nc|ENSG00000157426|Q4L235-4|AASDH	REV__nc|ENSG00000157426|Q4L235-4|AASDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.7724609375	2	612.845353	1223.67615	-0.72262	-0.00044285	0.73288	0.00044914	0.010262	6.2889E-06	612.8452673468365	50.913	0.48951	50.802	50.6	51.09	-0.11163					16	12	2	0	0	0	0.03519	1	5249	5249		26.693	0	1	107730	+		72462	36813	50796	50878	79201	79201					0.07326222020469686
SISLGDSEGPI	11	Unmodified	_SISLGDSEGPI_					0	0	0		nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62	nc|ENSG00000075702|O43379|WDR62	nc|ENSG00000075702|O43379|WDR62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.322998046875	2	537.769311	1073.52407	0.0083257	4.4773E-06	-1.8801	-0.0010111	-1.8718	-0.0010066	537.7680435490937	82.115	0.64825	82.004	81.646	82.294	-0.11006					35	15	3	0	0	0	0.024762	1	10165	10165		37.812	14.769	1	385280			72463	1568	50797	50879	79202	79202					-0.009751787270943169
SISLSPTKP	9	Unmodified	_SISLSPTKP_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2804870605469	2	465.26875	928.522947	0.65703	0.0003057	0.59239	0.00027562	1.2494	0.00058131	465.2687327648687	41.354	0.62988	41.377	40.764	41.394	0.023006					22	17	2	0	0	0	0.024427	1	3558	3558		26.693	0	1	245120			72464	2496	50798	50880	79203	79203					0.05582651694658125
SISPFGPNK	9	Unmodified	_SISPFGPNK_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.751953125	2	473.753267	945.491981	0.28059	0.00013293	-1.333	-0.00063151	-1.0524	-0.00049858	473.75247778885495	57.055	0.40666	56.89	56.535	56.941	-0.16431					33	11	4	0	0	0	0.024436	1	6371	6371		30.504	6.3009	1	4451800			72465	1234	50799	50881	79204	79204					0.01705498380431436
SISPFGPNK	9	Unmodified	_SISPFGPNK_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.753267	945.491981	0.4495	0.00021295	-1.5549	-0.00073662	-1.1054	-0.00052367	473.75234749625196	56.901	0.36447	56.901	56.571	56.936	0	0.0014026	-0.00064185	NaN	30.504	32	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4498100			72466	1234	50799	50881							0.01705498380431436
SISPFGPNK	9	Unmodified	_SISPFGPNK_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.753267	945.491981	-0.1059	-5.0169E-05	-0.41857	-0.0001983	-0.52447	-0.00024847	473.7531258226441	57.044	0.3354	56.876	56.597	56.932	-0.1672	-0.02347	0.00043478	NaN	30.504	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356320			72467	1234	50799	50881							0.01705498380431436
SISPFGPNK	9	Unmodified	_SISPFGPNK_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.753267	945.491981	0.34399	0.00016297	-0.84401	-0.00039985	-0.50002	-0.00023689	473.75274548111406	57.091	0.21634	56.889	56.71	56.926	-0.20208	-0.010787	3.1676E-05	NaN	30.504	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345270			72468	1234	50799	50881							0.01705498380431436
SISPFGPNK	9	Unmodified	_SISPFGPNK_					0	0	0		nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	nc|ENSG00000060566|Q68CJ9-4|CREB3L3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.753267	945.491981	-0.12341	-5.8465E-05	-0.68743	-0.00032567	-0.81084	-0.00038414	473.75267692067507	57.167	0.22338	56.943	56.738	56.961	-0.2248	0.042576	0.00018003	NaN	30.504	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388710			72469	1234	50799	50881							0.01705498380431436
SISPLKKNF	9	Unmodified	_SISPLKKNF_					0	0	0		ENSG00000113742|ENST00000265085|CPEB4;ENST00000518141.1_1_5:173317696-173318377:+|nuORF;ENST00000522344.1_1_5:173317696-173337630:+|nuORF;nc|ENSG00000113742|Q17RY0-2|CPEB4	ENSG00000113742|ENST00000265085|CPEB4	ENSG00000113742|ENST00000265085|CPEB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.3040771484375	2	517.305667	1032.59678	0.11292	5.8417E-05	-0.92904	-0.0004806	-0.81612	-0.00042218	517.3052361118528	60.027	1.6013	59.85	59.478	61.08	-0.1761					136	40	6	0	0	0	0.89441	1	6726	6726		32.812	3.6424	1	59576000			72470	3324	50800	50882	79205	79205					0.08178619856994374
SISPLNPQPR	10	Unmodified	_SISPLNPQPR_					0	0	0		nc|ENSG00000106948|Q7Z591-7|AKNA;nc|ENSG00000106948|Q7Z591-2|AKNA;ENSG00000106948|ENST00000374088|AKNA;nc|ENSG00000106948|Q7Z591-6|AKNA;nc|ENSG00000106948|Q7Z591-3|AKNA	nc|ENSG00000106948|Q7Z591-7|AKNA	nc|ENSG00000106948|Q7Z591-7|AKNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.8090209960938	2	554.809105	1107.60366	-0.2987	-0.00016572	-0.87248	-0.00048406	-1.1712	-0.00064978	554.8086076818097	46.207	0.75617	45.946	45.593	46.35	-0.26118					49	15	4	0	0	0	1.0002	1	4439	4439		45.972	0	1	9121300			72471	2820	50801	50883	79206	79206					0.0541593273756007
SISPSFCSSVE	11	Unmodified	_SISPSFCSSVE_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.2738037109375	2	571.755346	1141.49614	0.36371	0.00020795	-4.3691	-0.0024981	-4.0054	-0.0022901	571.752105829668	56.708	0.35233	56.483	56.269	56.621	-0.2248					9	8	2	0	0	0	0.024732	1	6159	6159		13.454	0	1	353630	+		72472	28655	50802	50884	79207	79207					-0.06894824978826364
SISQYKESV	9	Unmodified	_SISQYKESV_					0	0	0		ENSG00000061794|ENST00000081029|MRPS35	ENSG00000061794|ENST00000081029|MRPS35	ENSG00000061794|ENST00000081029|MRPS35	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7669067382812	2	520.766571	1039.51859	-0.46416	-0.00024172	-0.34831	-0.00018139	-0.81247	-0.00042311	520.7664167659216	47.498	3.4956	47.402	46.86	50.355	-0.096649					231	93	6	0	0	0	0.62163	1	4722	4722		51.335	0.14276	1	69514000			72473	1246	50803	50885	79208	79208					0.0004114248110909102
SISSFSGQNL	10	Unmodified	_SISSFSGQNL_					0	0	0		ENST00000342992.10_3_2:179410309-179410396:-|nuORF	ENST00000342992.10_3_2:179410309-179410396:-|nuORF	ENST00000342992.10_3_2:179410309-179410396:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7846069335938	2	520.256371	1038.49819	-0.63087	-0.00032822	-0.80069	-0.00041657	-1.4316	-0.00074478	520.2557222185782	78.191	0.82655	78.207	77.78	78.606	0.015907					42	19	3	0	0	0	0.03519	1	9571	9571		24.519	0	1	288000			72474	12515	50804	50886	79209	79209					-0.019520281786981286
SISSLSFFF	9	Unmodified	_SISSLSFFF_					0	0	0		ENST00000491118.1_1_10:70138969-70141006:-|nuORF	ENST00000491118.1_1_10:70138969-70141006:-|nuORF	ENST00000491118.1_1_10:70138969-70141006:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2733154296875	2	517.7633	1033.51205	0.015955	8.2608E-06	-1.8346	-0.00094989	-1.8186	-0.00094163	517.7617482178034	71.396	0.55597	71.121	70.877	71.433	-0.27509					22	12	2	0	0	0	0.024535	1	8306	8306		12.207	0	1	591640			72475	15452	50805	50887	79210	79210					-0.0033675067961667082
SISTDPLQ	8	Unmodified	_SISTDPLQ_					0	0	0			REV__ENSG00000130147|ENST00000392011|SH3BP4	REV__ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.9065856933594	2	430.721633	859.428712	-0.55371	-0.0002385	2.1684	0.00093396	1.6146	0.00069546	430.72253449580944	38.164	0.53496	37.943	37.686	38.221	-0.22149					25	15	2	0	0	0	0.027866	1	3149	3149		30.504	1.3541	1	301400	+		72476	23083	50806	50888	79211	79211					-0.0066248712747665195
SISTPLPPN	9	Unmodified	_SISTPLPPN_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.25396728515625	2	463.2531	924.491647	1.0668	0.00049421	-0.082923	-3.8414E-05	0.98389	0.00045579	463.2529253193515	110.13	0.40806	110.13	109.99	110.4	0					25	10	3	0	0	0	0.89441	1	14003	14003		32.812	6.1195	1	252850			72477	10162	50807	50889	79212	79212					0.02638078660561405
SISTPLPPN	9	Unmodified	_SISTPLPPN_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	463.2531	924.491647	0.19344	8.9614E-05	-0.053109	-2.4603E-05	0.14034	6.5011E-05	463.25302345387075	110.16	0.38667	110.15	109.99	110.38	-0.009491	-0.090352	-0.00032054	NaN	32.812	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243490			72478	10162	50807	50889							0.02638078660561405
SISTPLPPN	9	Unmodified	_SISTPLPPN_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	463.2531	924.491647	0.61429	0.00028457	0.35969	0.00016663	0.97398	0.0004512	463.2531413104199	110.26	0.43159	110.27	110.09	110.52	0.0059204	0.029182	6.1924E-05	NaN	32.812	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128360			72479	10162	50807	50889							0.02638078660561405
SISTPLPPN	9	Unmodified	_SISTPLPPN_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.2531	924.491647	0.02083	9.6494E-06	0.64195	0.00029739	0.66278	0.00030704	463.25325884294983	110.54	0.3959	110.41	110.17	110.57	-0.12524	0.17088	0.00032344	NaN	32.812	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55540			72480	10162	50807	50889							0.02638078660561405
SISTWNFSTV	10	Unmodified	_SISTWNFSTV_					0	0	0			REV__ENST00000484212.5_1_7:115750864-115752046:-|nuORF	REV__ENST00000484212.5_1_7:115750864-115752046:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.2799072265625	2	571.279846	1140.54514	-1.801	-0.0010289	-1.5633	-0.00089309	-3.3643	-0.001922	571.2787759030887	62.181	0.40704	62.181	61.906	62.313	0					28	12	3	0	0	0	0.71272	1	7233	7233		66.429	4.3219	1	1800800	+		72481	33534	50808	50890	79213	79213					-0.019511686276018736
SISVHLDWI	9	Unmodified	_SISVHLDWI_					0	0	0			REV__ENST00000524783.1_1_11:46568623-46568797:-|nuORF	REV__ENST00000524783.1_1_11:46568623-46568797:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2871704101562	2	535.287474	1068.5604	-0.66492	-0.00035593	1.3292	0.00071152	0.6643	0.00035559	535.2883700911556	80.863	0.98653	80.717	80.409	81.396	-0.146					59	23	4	0	0	0	0.31247	1	9688	9688		73.975	16.163	1	1244900	+		72482	34397	50809	50891	79214	79214					0.028857429602794582
SISVWKGF	8	Unmodified	_SISVWKGF_					0	0	0		ENST00000506708.1_1_5:180236520-180236568:-|nuORF	ENST00000506708.1_1_5:180236520-180236568:-|nuORF	ENST00000506708.1_1_5:180236520-180236568:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.2649841308594	2	462.252903	922.491253	0.14074	6.5057E-05	-0.11175	-5.1655E-05	0.028993	1.3402E-05	462.2528262355754	92.358	0.70004	92.217	91.879	92.579	-0.14131					29	16	2	0	0	0	0.027866	1	11350	11350		19.36	0	1	246710			72483	15747	50810	50892	79215	79215					0.026907037313776527
SISWAVFY	8	Unmodified	_SISWAVFY_					0	0	0			REV__ENSG00000040531|ENST00000046640|CTNS	REV__ENSG00000040531|ENST00000046640|CTNS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.75921630859375	2	486.744911	971.475269	-0.68188	-0.0003319	-1.4062	-0.00068446	-2.0881	-0.0010164	486.74349802471903	37.601	0.26518	37.633	37.45	37.715	0.032269					9	6	2	0	0	0	0.027866	1	3012	3012		26.796	2.5934	1	45808	+		72484	20091	50811	50893	79216	79216					-0.01161002505534725
SITDITALLA	10	Unmodified	_SITDITALLA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.3258972167969	2	509.294965	1016.57538	-0.21532	-0.00010966	-4.2472	-0.0021631	-4.4626	-0.0022728	509.29301747300815	77.983	0.42403	77.824	77.53	77.954	-0.15888					14	9	2	0	0	0	0.03519	1	9267	9267		68.787	2.3575	1	68261			72485	6931	50812	50894	79217	79217					0.06775190037592438
SITDMRAPV	9	Unmodified	_SITDMRAPV_					0	0	0		nc|ENSG00000103269|O75783|RHBDL1;ENST00000450775.2_1_16:725790-727700:+|nuORF;ENSG00000103269|ENST00000352681|RHBDL1	nc|ENSG00000103269|O75783|RHBDL1	nc|ENSG00000103269|O75783|RHBDL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2896423339844	2	495.257859	988.501166	-0.80785	-0.00040009	-2.2581	-0.0011183	-3.0659	-0.0015184	495.25648853968727	61.88	0.59102	61.702	61.412	62.003	-0.17782					30	14	3	0	0	0	0.024457	1	6907	6907		45.952	18.07	1	570300			72486	18140	50813	50895	79218	79218					0.006455236744500326
SITDVTMENN	10	Unmodified	_SITDVTMENN_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.3089599609375	2	562.250428	1122.4863	-0.058266	-3.276E-05	-2.1814	-0.0012265	-2.2396	-0.0012592	562.2488786729525	68.893	0.83962	68.601	68.326	69.166	-0.29267					43	21	3	0	0	0	0.03519	1	8310	8310		79.713	13.283	1	660980			72487	9990	50814	50896	79219	79219					-0.07004012984225483
SITFREKW	8	Unmodified	_SITFREKW_					0	0	0		ENST00000354193.4_1_11:22842744-22842939:-|nuORF	ENST00000354193.4_1_11:22842744-22842939:-|nuORF	ENST00000354193.4_1_11:22842744-22842939:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.255126953125	2	533.787641	1065.56073	-0.41623	-0.00022218	3.8471	0.0020536	3.4309	0.0018314	533.7891511917202	38.926	0.20298	38.7	38.636	38.839	-0.2257					6	5	2	0	0	0	0.027866	1	3241	3241		79.451	24.675	1	120060			72488	12620	50815	50897	79220	79220					0.030571626801247476
SITGFCGSLLK	11	Unmodified	_SITGFCGSLLK_					0	0	0		ENST00000451174.1_3_14:45716533-45719246:-|nuORF	ENST00000451174.1_3_14:45716533-45719246:-|nuORF	ENST00000451174.1_3_14:45716533-45719246:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.300537109375	2	563.302267	1124.58998	-1.0642	-0.00059945	-2.2099	-0.0012448	-3.274	-0.0018443	563.3009294669326	82.904	1.3277	82.931	82.617	83.945	0.026558					71	30	3	0	0	0	0.58492	1	10297	10297		70.816	3.3225	1	1211100			72489	14517	50816	50898	79221	79221					0.03266938914111961
SITLLLTIEM	10	Unmodified	_SITLLLTIEM_					0	0	0			REV__ENST00000358344.7_1_5:177637731-177637803:+|nuORF	REV__ENST00000358344.7_1_5:177637731-177637803:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3297729492188	2	567.32795	1132.64135	-0.48805	-0.00027688	3.4141	0.0019369	2.9261	0.00166	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.0271	1	11756	11756		42.396	2.338	1	14972000	+		72490	30854	50817	50899	79222	79222					0.08033262888170611
SITMLICYY	9	Carbamidomethyl (C),Oxidation (M)	_SITM(Oxidation (M))LIC(Carbamidomethyl (C))YY_	SITMLIC(1)YY	SITM(1)LICYY	SITMLIC(58)YY	SITM(58)LICYY	0	1	1			REV__ENST00000232564.7_1_3:179123064-179123154:-|nuORF	REV__ENST00000232564.7_1_3:179123064-179123154:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.2741088867188	2	590.27486	1178.53517	-1.1159	-0.00065866	0.91894	0.00054243	-0.19692	-0.00011624	590.2751113757992	89.52	0.72354	89.392	89.079	89.803	-0.12774					38	16	3	0	0	0	0.52323	1	10950	10950		57.811	8.2752	1	491680	+		72491	29411	50818	50900	79223	79223	389	857			-0.04695815948798554
SITMNKMKLL	10	Unmodified	_SITMNKMKLL_					0	0	0		ENST00000465407.5_1_10:46135230-46135753:-|nuORF;ENSG00000172671|ENST00000344646|ZFAND4	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.7772216796875	2	589.83542	1177.65629	-1.7987	-0.0010609	-4.1621	-0.0024549	-5.9608	-0.0035159	589.8327916953382	80.944	0.71404	80.944	80.585	81.299	0					55	17	4	0	0	0	0.03519	1	10056	10056		14.137	0	1	1177300			72492	14781	50819	50901	79224	79224					0.07456431484524728
SITMNKMKLL	10	Unmodified	_SITMNKMKLL_					0	0	0		ENST00000465407.5_1_10:46135230-46135753:-|nuORF;ENSG00000172671|ENST00000344646|ZFAND4	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.83542	1177.65629	-0.37846	-0.00022323	-5.5189	-0.0032553	-5.8974	-0.0034785	589.8320760076957	80.902	0.85162	80.664	80.369	81.221	-0.23784	-0.16753	-0.00035945	NaN	45.972	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503640			72493	14781	50819	50901							0.07456431484524728
SITMNKMKLL	10	Unmodified	_SITMNKMKLL_					0	0	0		ENST00000465407.5_1_10:46135230-46135753:-|nuORF;ENSG00000172671|ENST00000344646|ZFAND4	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	589.83542	1177.65629	-0.48649	-0.00028695	-5.5741	-0.0032878	-6.0606	-0.0035747	589.8321083728111	80.9	0.81467	80.693	80.426	81.241	-0.20633	-0.13838	-0.00042451	NaN	45.972	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600710			72494	14781	50819	50901							0.07456431484524728
SITMNKMKLL	10	Unmodified	_SITMNKMKLL_					0	0	0		ENST00000465407.5_1_10:46135230-46135753:-|nuORF;ENSG00000172671|ENST00000344646|ZFAND4	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	589.83542	1177.65629	-0.76353	-0.00045036	-5.1623	-0.0030449	-5.9259	-0.0034953	589.8322709237443	80.881	0.69643	80.735	80.368	81.064	-0.146	-0.097091	6.1213E-05	NaN	45.972	44	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483920			72495	14781	50819	50901							0.07456431484524728
SITPPSHVVD	10	Unmodified	_SITPPSHVVD_					0	0	0		ENSG00000241127|ENST00000223273|YAE1	ENSG00000241127|ENST00000223273|YAE1	ENSG00000241127|ENST00000223273|YAE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.818603515625	2	526.274564	1050.53457	0.014819	7.7986E-06	0.9904	0.00052122	1.0052	0.00052902	526.7753549636255	70.937	0.73161	70.937	70.569	71.301	0					45	17	4	0	0	0	0.03519	1	8586	8586		19.997	3.5236	1	352280			72496	10779	50820	50902	79225	79225					0.011328487180207958
SITQPTLHS	9	Unmodified	_SITQPTLHS_					0	0	0		ENSG00000150681|ENST00000367460|RGS18	ENSG00000150681|ENST00000367460|RGS18	ENSG00000150681|ENST00000367460|RGS18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.290283203125	2	492.261456	982.50836	0.01654	8.1422E-06	-0.19242	-9.4723E-05	-0.17588	-8.658E-05	492.2614112038738	50.319	0.26665	50.4	50.276	50.543	0.080994					13	7	3	0	0	0	0.024506	1	5173	5173		16.473	4.2663	1	103240			72497	6149	50821	50903	79226	79226					0.01640579546540266
SITSFYYEP	9	Unmodified	_SITSFYYEP_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.2167358398438	2	553.755672	1105.49679	0.015347	8.4984E-06	-3.7583	-0.0020812	-3.7429	-0.0020727	553.7535982644401	70.076	0.45116	69.853	69.597	70.048	-0.22245					18	10	2	0	0	0	0.024541	1	8149	8149		10.866	2.1719	1	139450	+		72498	28972	50822	50904	79227	79227					-0.05173662267475265
SITTDKGLLTP	11	Unmodified	_SITTDKGLLTP_					0	0	0			REV__ENSG00000141200|ENST00000268919|KIF2B	REV__ENSG00000141200|ENST00000268919|KIF2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.7665405273438	2	573.324254	1144.63395	-0.75214	-0.00043122	0.99822	0.0005723	0.24608	0.00014108	573.3241165524581	48.122	0.41311	47.846	47.63	48.043	-0.27598					21	10	4	0	0	0	0.02478	1	4752	4752		47.96	11.513	1	212570	+		72499	24068	50823	50905	79228	79228					0.06742246612111558
SITVVLSHS	9	Unmodified	_SITVVLSHS_					0	0	0			REV__ENST00000560958.1_1_15:83395247-83395832:-|nuORF	REV__ENST00000560958.1_1_15:83395247-83395832:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7667236328125	2	471.766374	941.518196	1.1082	0.00052282	-1.1105	-0.00052388	-0.0022437	-1.0585E-06	471.7656926209525	71.51	1.2354	71.222	70.677	71.912	-0.28858					61	31	3	0	0	0	0.11848	1	8625	8625		106.42	7.0402	1	2722400	+		72500	35161	50824	50906	79229	79229					0.04509767551905952
SITYIGFLG	9	Unmodified	_SITYIGFLG_					0	0	0			REV__ENST00000563711.5_1_16:21973998-21987565:+|nuORF	REV__ENST00000563711.5_1_16:21973998-21987565:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	485.7655029296875	2	485.765843	969.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.96	1	101.96	101.46	102.46	0								0	0	0	0.63881	1	13059	13059		33.516	3.0119	1		+		72501	24040	50825	50907	79230	79230					0.031155531830108885
SIVAWLTPY	9	Unmodified	_SIVAWLTPY_					0	0	0			REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF	REV__ENST00000337198.9_1_8:103870367-103876119:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2879028320312	2	525.286943	1048.55933	0.34077	0.000179	-4.2238	-0.0022187	-3.8831	-0.0020397	525.2845914334172	53.171	0.9477	52.913	52.564	53.512	-0.25839					54	24	5	0	0	0	0.43973	1	5545	5545		63.306	4.5243	1	2027900	+		72502	30558	50826	50908	79231	79231					0.03699528591369017
SIVCDEYF	8	Unmodified	_SIVCDEYF_					0	0	0		ENSG00000188467|ENST00000341459|SLC24A5	ENSG00000188467|ENST00000341459|SLC24A5	ENSG00000188467|ENST00000341459|SLC24A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.7331237792969	2	488.210043	974.405534	-0.47301	-0.00023093	-2.0088	-0.00098071	-2.4818	-0.0012116	488.2087882816936	22.636	0.68782	22.45	22.189	22.877	-0.18539					30	14	3	0	0	0	0.027866	1	862	862		44.531	0	1	144450			72503	9721	50827	50909	79232	79232					-0.08269249236457199
SIVDRKVTP	9	Unmodified	_SIVDRKVTP_					0	0	0		DSG1|p.E118K|1|0.09|ENSG00000134760|chr18:31328324-31328324|G/A|missense_variant	DSG1|p.E118K|1|0.09|ENSG00000134760|chr18:31328324-31328324|G/A|missense_variant	DSG1|p.E118K|1|0.09|ENSG00000134760|chr18:31328324-31328324|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7723083496094	2	507.800749	1013.58694	-0.10666	-5.4164E-05	1.9539	0.00099217	1.8472	0.00093801	507.8021565554611	51.693	0.68982	51.693	51.323	52.012	0					30	19	2	0	0	0	0.024418	1	5525	5525		30.318	3.6248	1	1970100			72504	673	50828	50910	79233	79233					0.08069431851606623
SIVFTKLTPF	10	Unmodified	_SIVFTKLTPF_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;ENST00000586077.1_1_19:34890325-34890541:+|nuORF;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	ENSG00000105220|ENST00000356487|GPI	ENSG00000105220|ENST00000356487|GPI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2288208007812	2	576.8368	1151.65905	-0.15504	-8.9431E-05	-1.8643	-0.0010754	-2.0193	-0.0011648	576.836024010267	73.619	0.47133	73.342	73.133	73.605	-0.2769					24	11	3	0	0	0	0.03519	1	8652	8652		26.693	13.239	1	208210		+	72505	2646	50829	50911	79234	79234					0.08928346205289017
SIVFTKLTPF	10	Unmodified	_SIVFTKLTPF_					0	0	0		ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;CON__Q3ZBD7;ENST00000586077.1_1_19:34890325-34890541:+|nuORF;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	ENSG00000105220|ENST00000356487|GPI	ENSG00000105220|ENST00000356487|GPI	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	576.8368	1151.65905	-0.60108	-0.00034672	-0.72122	-0.00041603	-1.3223	-0.00076275	576.8363296083628	73.388	0.46904	73.198	72.967	73.436	-0.19026	-0.072158	0.00038378	NaN	19.997	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296130		+	72506	2646	50829	50911							0.08928346205289017
SIVGLPLGFL	10	Unmodified	_SIVGLPLGFL_					0	0	0			REV__ENSG00000166479|ENST00000299608|TMX3	REV__ENSG00000166479|ENST00000299608|TMX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2695007324219	2	508.312961	1014.61137	-0.87238	-0.00044344	-3.7132	-0.0018875	-4.5855	-0.0023309	508.31097196565895	44.591	0.38851	44.487	44.239	44.628	-0.10468					21	9	3	0	0	0	0.03519	1	4189	4189		38.806	0	1	635410	+		72507	26024	50830	50912	79235	79235					0.10464692005132292
SIVHGFPVF	9	Unmodified	_SIVHGFPVF_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.306884765625	2	501.774003	1001.53345	-0.44801	-0.0002248	0.035875	1.8001E-05	-0.41213	-0.0002068	501.7738418194892	23.224	0.7729	23.044	22.79	23.563	-0.17989					25	17	2	0	0	0	0.024535	1	894	894		25.45	0	1	391300	+		72508	25254	50831	50913	79236	79236					0.0327467913974715
SIVHGFPVF	9	Unmodified	_SIVHGFPVF_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.774003	1001.53345	-0.34827	-0.00017475	-0.25116	-0.00012603	-0.59943	-0.00030078	501.77369428905354	23.008	0.81176	23.008	22.711	23.523	0	0.0028803	0.00014055	NaN	25.45	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343380	+		72509	25254	50831	50913							0.0327467913974715
SIVHGFPVF	9	Unmodified	_SIVHGFPVF_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.774003	1001.53345	-0.46965	-0.00023566	-0.20368	-0.0001022	-0.67333	-0.00033786	501.7737843126057	23.033	0.63812	22.973	22.709	23.347	-0.060862	-0.032597	0.0001882	NaN	25.45	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418360	+		72510	25254	50831	50913							0.0327467913974715
SIVHGFPVF	9	Unmodified	_SIVHGFPVF_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.774003	1001.53345	-0.60306	-0.0003026	-0.14821	-7.4365E-05	-0.75126	-0.00037696	501.7737538146305	22.911	0.82035	22.985	22.653	23.474	0.073954	-0.019737	0.00024388	NaN	25.45	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363280	+		72511	25254	50831	50913							0.0327467913974715
SIVHPRYKR	9	Unmodified	_SIVHPRYKR_					0	0	0		ENST00000566216.5_1_16:70351424-70351475:+|nuORF	ENST00000566216.5_1_16:70351424-70351475:+|nuORF	ENST00000566216.5_1_16:70351424-70351475:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.2612915039062	2	578.340907	1154.66726	-0.79712	-0.00046101	3.6137	0.0020899	2.8166	0.0016289	578.3434376455286	75.534	0.32082	75.275	75.117	75.438	-0.25865					10	7	2	0	0	0	0.024457	1	8940	8940		29.15	11.785	1	57736			72512	16939	50832	50914	79237	79237					0.09611337965293387
SIVKHRSAE	9	Unmodified	_SIVKHRSAE_					0	0	0			REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7877197265625	2	513.788173	1025.56179	-1.0023	-0.00051499	0.67057	0.00034453	-0.33177	-0.00017046	513.7883890608659	24.114	0.88525	24.066	23.783	24.669	-0.047148					40	19	3	0	0	0	0.62163	1	1010	1010		51.335	1.8939	1	1774600	+		72513	20089	50833	50915	79238	79238					0.05003377049047231
SIVKNMPTK	9	Unmodified	_SIVKNMPTK_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	nc|ENSG00000111837|P20794-3|MAK	nc|ENSG00000111837|P20794-3|MAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3019104003906	2	509.291702	1016.56885	-1.0391	-0.00052922	-2.1851	-0.0011129	-3.2242	-0.0016421	509.29083967691264	55.55	0.77389	55.648	55.083	55.856	0.098015					26	20	2	0	0	0	0.024367	1	6095	6095		52.937	15.778	1	643560			72514	3149	50834	50916	79239	79239					0.061229736052496264
SIVKQLND	8	Unmodified	_SIVKQLND_					0	0	0			REV__ENST00000560002.5_1_15:56999309-56999485:-|nuORF	REV__ENST00000560002.5_1_15:56999309-56999485:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7682800292969	2	458.758549	915.502546	0.35808	0.00016427	2.2353	0.0010255	2.5934	0.0011897	458.75854596922653	36.988	0.66979	36.924	36.709	37.379	-0.063389					35	17	3	0	0	0	0.027866	1	2939	2939		11.511	0	1	430250	+		72515	35131	50835	50917	79240	79240					0.041414810348555875
SIVPHRKS	8	Unmodified	_SIVPHRKS_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.2748107910156	2	462.274701	922.534849	0.32382	0.0001497	-0.51439	-0.00023779	-0.19057	-8.8094E-05	462.27438369622	21.097	0.54057	20.902	20.632	21.172	-0.19577					35	10	4	0	0	0	0.77775	1	629	629		60.972	6.2073	1	929770			72516	5170	50836	50918	79241	79241					0.070483132285176
SIVPHRKS	8	Unmodified	_SIVPHRKS_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2747497558594	2	462.274701	922.534849	-1.1229	-0.00051907	0.87479	0.00040439	-0.24807	-0.00011468	462.2750577946008	21.156	0.49393	20.944	20.673	21.167	-0.2128					26	9	3	0	0	0	0.97924	1	621	621		40.573	0	1	1003700			72517	5170	50836	50918	79242	79242					0.070483132285176
SIVPRGLRKPE	11	Unmodified	_SIVPRGLRKPE_					0	0	0		ENST00000372833.5_1_10:75542131-75542847:+|nuORF	ENST00000372833.5_1_10:75542131-75542847:+|nuORF	ENST00000372833.5_1_10:75542131-75542847:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.3795166015625	2	626.380229	1250.7459	0.33644	0.00021074	-1.282	-0.00080303	-0.94557	-0.00059229	626.3792889018249	104.56	1.023	104.39	104.02	105.04	-0.16791					95	33	5	0	0	0	1.0013	1	13015	13015		27.047	0	1	2470500			72518	13059	50837	50919	79243	79243					0.13056145479754377
SIVRKRVSP	9	Unmodified	_SIVRKRVSP_					0	0	0		ENSG00000181961|ENST00000314721|OR4A16	ENSG00000181961|ENST00000314721|OR4A16	ENSG00000181961|ENST00000314721|OR4A16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3057861328125	2	521.330008	1040.64546	-0.60663	-0.00031625	-0.28432	-0.00014822	-0.89095	-0.00046448	521.3304406484084	47.164	0.60559	47.164	46.892	47.497	0					26	16	2	0	0	0	0.024292	1	4717	4717		40.778	12.896	1	703130			72519	9085	50838	50920	79244	79244					0.12676533216745156
SIVSFPILL	9	Unmodified	_SIVSFPILL_					0	0	0			REV__nc|ENSG00000227152|P0C7T2|OR2T7	REV__nc|ENSG00000227152|P0C7T2|OR2T7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2761535644531	2	494.807511	987.600469	-0.44173	-0.00021857	-3.6773	-0.0018195	-4.119	-0.0020381	494.8054767577172	31.841	0.41486	31.683	31.489	31.904	-0.15772					13	9	2	0	0	0	0.024487	1	2142	2142		31.955	0	1	67277	+		72520	27959	50839	50921	79245	79245					0.10617289630863525
SIVSKLLA	8	Unmodified	_SIVSKLLA_					0	0	0		PRPSAP2|p.M133I|1|0.25|ENSG00000141127|chr17:18877857-18877857|G/C|missense_variant;nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2	PRPSAP2|p.M133I|1|0.25|ENSG00000141127|chr17:18877857-18877857|G/C|missense_variant	PRPSAP2|p.M133I|1|0.25|ENSG00000141127|chr17:18877857-18877857|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.7095947265625	2	415.770929	829.527304	-0.85659	-0.00035615	0.80828	0.00033606	-0.048312	-2.0087E-05	415.7711027881465	26.693	0.43173	26.457	26.232	26.663	-0.23603					21	10	3	0	0	0	0.027866	1	1386	1386		25.45	13.243	1	193330			72521	5473	50840	50922	79246	79246					0.10572160908236583
SIVSKLLA	8	Unmodified	_SIVSKLLA_					0	0	0		PRPSAP2|p.M133I|1|0.25|ENSG00000141127|chr17:18877857-18877857|G/C|missense_variant;nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2	PRPSAP2|p.M133I|1|0.25|ENSG00000141127|chr17:18877857-18877857|G/C|missense_variant	PRPSAP2|p.M133I|1|0.25|ENSG00000141127|chr17:18877857-18877857|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	415.770929	829.527304	-0.48042	-0.00019974	0.51196	0.00021286	0.031542	1.3114E-05	415.7710059622488	26.64	0.5243	26.477	26.271	26.795	-0.16331	0.099575	-1.006E-06	NaN	25.45	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202510			72522	5473	50840	50922							0.10572160908236583
SIVTSTKVET	10	Unmodified	_SIVTSTKVET_					0	0	0			REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.8088989257812	2	532.795329	1063.5761	-0.056574	-3.0142E-05	2.2344	0.0011905	2.1778	0.0011603	532.796343484958	41.236	0.74297	41.112	40.618	41.361	-0.12317					25	20	2	0	0	0	0.03519	1	3645	3645		19.997	0	1	208620	+		72523	23901	50841	50923	79247	79247					0.04685984686670963
SIVTSTKVET	10	Unmodified	_SIVTSTKVET_					0	0	0			REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.795329	1063.5761	-0.39474	-0.00021032	2.2658	0.0012072	1.8711	0.00099691	532.79635609924	41.102	0.56393	41.102	40.728	41.292	0	-0.049583	-0.00010568	NaN	31.53	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190500	+		72524	23901	50841	50923							0.04685984686670963
SIVTSTKVET	10	Unmodified	_SIVTSTKVET_					0	0	0			REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	REV__INTS12|p.S284Cfs*3|1|0.24|ENSG00000138785|chr4:105683271-105683271|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.795329	1063.5761	-0.3913	-0.00020848	2.5289	0.0013474	2.1376	0.0011389	532.7965402842054	41.217	0.59812	41.24	40.83	41.429	0.023006	0.088417	0.00017465	NaN	31.53	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172010	+		72525	23901	50841	50923							0.04685984686670963
SIVVPLKPK	9	Unmodified	_SIVVPLKPK_					0	0	0			REV__nc|ENSG00000171960|O43447-2|PPIH	REV__nc|ENSG00000171960|O43447-2|PPIH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.7693176269531	2	490.828778	979.643003	-0.33778	-0.00016579	0.38692	0.00018991	0.049143	2.4121E-05	490.82880419959014	42.222	0.57827	41.99	41.695	42.273	-0.23186					37	15	3	0	0	0	0.024541	1	3813	3813		18.324	0.95945	1	1112000	+		72526	26620	50842	50924	79248	79248					0.15236684759088348
SIVWCPSIL	9	Unmodified	_SIVWCPSIL_					0	0	0			REV__nc|ENSG00000122861|P00749-2|PLAU	REV__nc|ENSG00000122861|P00749-2|PLAU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7830505371094	2	509.275521	1016.53649	-0.47944	-0.00024417	-2.7798	-0.0014157	-3.2592	-0.0016598	509.2740707508207	56.991	0.99918	56.991	56.46	57.459	0					42	27	2	0	0	0	0.024	1	6323	6323		55.504	0	1	274850	+		72527	22666	50843	50925	79249	79249					0.02888186202255838
SIWQVNQT	8	Unmodified	_SIWQVNQT_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;ENST00000559868.1_1_15:51745745-51748358:-|nuORF	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.27984619140625	2	488.248349	974.482145	-0.45407	-0.0002217	1.7772	0.00086771	1.3231	0.00064601	488.24825037526654	23.501	0.87077	23.501	23.123	23.994	0					32	20	2	0	0	0	0.027866	1	920	920		12.959	0	1	61032			72528	2544	50844	50926	79250	79250					-0.0061168962496367385
SIYCLPSVY	9	Unmodified	_SIYCLPSVY_					0	0	0			REV__ENSG00000188694|ENST00000340345|KRTAP24-1	REV__ENSG00000188694|ENST00000340345|KRTAP24-1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7583618164062	2	522.757161	1043.49977	-0.52619	-0.00027507	3.9987	0.0020903	3.4725	0.0018153	522.7591533565277	41.165	1.0272	41.029	40.712	41.74	-0.13554					66	26	4	0	0	0	0.55828	1	3612	3612		55.504	2.1528	1	5741100	+		72529	28055	50845	50927	79251	79251					-0.02024110414322422
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.2880249023438	2	513.286943	1024.55933	-0.45774	-0.00023495	0.36834	0.00018907	-0.089394	-4.5885E-05	513.2868843458496	95.752	1.4005	95.752	95.392	96.792	0					71	32	4	0	0	0	0.001118	3	12180	12180;12190;12202		190.71	95.252	1	1697100			72530	9337	50846	50928	79252;79253;79254	79252					0.04803528591401118
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2871704101562	2	513.286943	1024.55933	0.32099	0.00016476	-0.42724	-0.00021929	-0.10625	-5.4536E-05	513.2864467865845	95.655	1.5748	95.658	95.347	96.922	0.0033798					71	36	4	0	0	0	0.0035911	3	12154	12133;12143;12154		183.89	86.422	1	1727300			72531	9337	50846	50928	79255;79256;79257	79257					0.04803528591401118
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.2874145507812	2	513.286943	1024.55933	0.26356	0.00013528	-0.566	-0.00029052	-0.30244	-0.00015524	513.2864827705633	95.762	0.9607	95.764	95.395	96.356	0.0020676					71	22	5	0	0	0	0.00014436	4	12127	12103;12115;12127;12139		200.96	103.48	1	2118000			72532	9337	50846	50928	79258;79259;79260;79261	79260					0.04803528591401118
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3236083984375	2	513.286943	1024.55933	0.70677	0.00036277	-2.3733	-0.0012182	-1.6666	-0.00085542	513.2874272014105	96.471	0.87846	96.474	96.314	97.193	0.0020752					37	19	3	0	0	0	0.03519	1	12311	12311		40.778	19.831	1	58896			72533	9337	50846	50928	79262	79262					0.04803528591401118
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.2875366210938	2	513.286943	1024.55933	-0.018172	-9.3275E-06	0.0076093	3.9057E-06	-0.010563	-5.4217E-06	513.2868620454698	95.622	0.90959	95.486	95.068	95.978	-0.13689					34	20	2	0	0	0	0.026374	2	11799	11787;11799		157.99	60.517	1	753310			72534	9337	50846	50928	79263;79264	79264					0.04803528591401118
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2877807617188	2	513.286943	1024.55933	0.58964	0.00030265	-0.70563	-0.00036219	-0.11599	-5.9534E-05	513.2864852911476	95.625	0.73819	95.503	95.203	95.941	-0.12251					31	16	2	0	0	0	0.0072366	2	11803	11803;11814		173.85	85.206	1	1068700			72535	9337	50846	50928	79265;79266	79265					0.04803528591401118
SIYGGFLLGV	10	Unmodified	_SIYGGFLLGV_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2874755859375	2	513.286943	1024.55933	-0.31693	-0.00016267	0.0084652	4.3451E-06	-0.30846	-0.00015833	513.2867939864134	95.681	1.0732	95.529	95.186	96.259	-0.15186					38	24	2	0	0	0	0.013771	2	11800	11788;11800		167.82	82.465	1	1024500			72536	9337	50846	50928	79267;79268	79268					0.04803528591401118
SIYGLHHSP	9	Unmodified	_SIYGLHHSP_					0	0	0		CYP4A22|p.N421S|1|0.4|ENSG00000162365|chr1:47145905-47145905|A/G|missense_variant	CYP4A22|p.N421S|1|0.4|ENSG00000162365|chr1:47145905-47145905|A/G|missense_variant	CYP4A22|p.N421S|1|0.4|ENSG00000162365|chr1:47145905-47145905|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7601318359375	2	505.756341	1009.49813	0.41898	0.0002119	1.6619	0.0008405	2.0808	0.0010524	505.75675923819455	60.011	1.1419	60.011	59.295	60.437	0					63	30	3	0	0	0	0.024381	1	6875	6875		21.96	1.013	1	263780			72537	615	50847	50929	79269	79269					-0.006239833880499646
SIYGSLYSHC	10	Unmodified	_SIYGSLYSHC_					0	0	0			REV__nc|ENSG00000185551|P24468-3|NR2F2	REV__nc|ENSG00000185551|P24468-3|NR2F2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.3140869140625	2	565.252774	1128.491	-1.1042	-0.00062415	0.59919	0.00033869	-0.50501	-0.00028546	565.2517561352373	36.549	0.3106	36.587	36.338	36.648	0.038044					10	8	2	0	0	0	0.03519	1	2826	2826		20.947	0	1	61330	+		72538	27771	50848	50930	79270	79270					-0.06811084050764293
SIYHFAGLF	9	Unmodified	_SIYHFAGLF_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.286865234375	2	527.77146	1053.52837	-0.91303	-0.00048187	0.42498	0.00022429	-0.48805	-0.00025758	528.2727753375156	30.125	0.12515	30.2	30.129	30.254	0.074316					4	2	2	0	0	0	0.024541	1	1860	1860		8.2313	0	1	24134			72539	3514	50849	50931	79271	79271					0.0037437527712427254
SIYHGIVD	8	Unmodified	_SIYHGIVD_					0	0	0			REV__ENSG00000090432|ENST00000264198|MUL1	REV__ENSG00000090432|ENST00000264198|MUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2890625	2	452.232168	902.449782	1.0619	0.00048021	2.7424	0.0012402	3.8043	0.0017204	452.23323184212205	55.537	0.88834	55.537	55.182	56.07	0					45	24	3	0	0	0	0.027866	1	6203	6203		42.474	27.81	1	289920	+		72540	20874	50850	50932	79272	79272					-0.005344770279521072
SIYHGIVD	8	Unmodified	_SIYHGIVD_					0	0	0			REV__ENSG00000090432|ENST00000264198|MUL1	REV__ENSG00000090432|ENST00000264198|MUL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2899169921875	2	452.232168	902.449782	0.1084	4.9022E-05	4.0113	0.001814	4.1197	0.0018631	452.2336082946771	55.662	0.83234	55.506	55.126	55.958	-0.15601					51	22	3	0	0	0	0.027866	1	6184	6184		42.474	8.9589	1	357950	+		72541	20874	50850	50932	79273	79273					-0.005344770279521072
SIYLKGDVF	9	Unmodified	_SIYLKGDVF_					0	0	0		ENSG00000114423|ENST00000394030|CBLB;nc|ENSG00000114423|Q13191-2|CBLB	ENSG00000114423|ENST00000394030|CBLB	ENSG00000114423|ENST00000394030|CBLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.261474609375	2	521.2844	1040.55425	-0.34438	-0.00017952	4.2202	0.0021999	3.8759	0.0020204	521.2865541764379	41.981	0.74345	41.858	41.527	42.271	-0.12299					28	19	2	0	0	0	0.024477	1	3805	3805		27.882	0	1	132290			72542	3362	50851	50933	79274	79274					0.035592247287468126
SIYPAPQV	8	Unmodified	_SIYPAPQV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000243910|ENST00000490341|TUBA4B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.7372131347656	2	437.737086	873.459619	1.393	0.00060979	-1.0213	-0.00044706	0.37174	0.00016272	437.73646450196446	59.62	1.0344	59.62	59.07	60.104	0					65	27	4	0	0	0	0.56592	1	6821	6821		79.451	5.4763	1	1561300			72543	3976;7700	50852	50934	79275	79275					0.01782710977431634
SIYPAPQV	8	Unmodified	_SIYPAPQV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000243910|ENST00000490341|TUBA4B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.73687744140625	2	437.737086	873.459619	0.31895	0.00013962	0.077273	3.3825E-05	0.39623	0.00017344	437.7369735731068	59.811	0.99583	59.611	59.136	60.132	-0.20016					69	26	4	0	0	0	0.2917	1	6824	6824		115.46	30.099	1	1552900			72544	3976;7700	50852	50934	79276	79276					0.01782710977431634
SIYTLPALL	9	Unmodified	_SIYTLPALL_					0	0	0			REV__ENSG00000159618|ENST00000349457|ADGRG5	REV__ENSG00000159618|ENST00000349457|ADGRG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7811279296875	2	495.797143	989.579734	-0.72952	-0.00036169	-0.78616	-0.00038978	-1.5157	-0.00075147	495.7958198417946	28.882	0.93356	28.882	28.362	29.296	0					32	22	4	0	0	0	0.024412	1	1646	1646		24.203	1.1603	1	154230	+		72545	25265	50853	50935	79277	79277					0.0845269925117691
SKACNKDRRL	10	Unmodified	_SKACNKDRRL_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.8244018554688	2	595.824763	1189.63497	-0.5711	-0.00034028	-0.30558	-0.00018207	-0.87668	-0.00052235	595.8244848973445	76.667	0.63566	76.499	76.223	76.859	-0.16854					33	14	3	0	0	0	0.98527	1	9101	9101		47.96	4.3087	1	661960	+		72546	26194	50854	50936	79278	79278					0.04774182500000279
SKADYTSHL	9	Unmodified	_SKADYTSHL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.77203369140625	2	511.251089	1020.48762	-0.3985	-0.00020373	3.6699	0.0018762	3.2714	0.0016725	511.25268472665493	31.749	0.67619	31.761	31.545	32.221	0.011799					39	16	4	0	0	0	0.024495	1	2104	2104		42.396	3.59	1	928050			72547	1896	50855	50937	79279	79279					-0.021800108331490264
SKAFIRFSH	9	Unmodified	_SKAFIRFSH_					0	0	0		ZNF492|p.S375I|1|0.13|ENSG00000229676|chr19:22664793-22664793|G/T|missense_variant	ZNF492|p.S375I|1|0.13|ENSG00000229676|chr19:22664793-22664793|G/T|missense_variant	ZNF492|p.S375I|1|0.13|ENSG00000229676|chr19:22664793-22664793|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7817993164062	2	546.801083	1091.58761	-1.7349	-0.00094867	1.7638	0.00096443	0.028821	1.576E-05	546.8020282037048	75.325	0.1461	75.325	75.232	75.378	0					6	3	2	0	0	0	0.024506	1	9246	9246		16.473	0	1	138770			72548	38194	50856	50938	79280	79280					0.045482712913326395
SKAGDETLTSS	11	Unmodified	_SKAGDETLTSS_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2418212890625	2	548.26185	1094.50915	-0.098393	-5.3945E-05	1.4776	0.0008101	1.3792	0.00075616	548.2627449174455	49.591	0.53502	49.311	49.049	49.584	-0.27977					21	13	2	0	0	0	0.024797	1	5005	5005		31.634	20.769	1	154080	+		72549	22372	50857	50939	79281	79281					-0.03432670595066156
SKAGGVGLNL	10	Unmodified	_SKAGGVGLNL_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.26641845703125	2	458.266542	914.51853	-0.42969	-0.00019691	0.43263	0.00019826	0.0029407	1.3476E-06	458.2665680426582	28.534	1.129	28.382	28.04	29.169	-0.15195					61	26	3	0	0	0	1.0002	1	1681	1681		45.972	1.5951	1	2205600			72550	9978	50858	50940	79282	79282					0.05785187271760606
SKAHRHRH	8	Unmodified	_SKAHRHRH_					0	0	0		ENSG00000102021|ENST00000371920|LUZP4	ENSG00000102021|ENST00000371920|LUZP4	ENSG00000102021|ENST00000371920|LUZP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7342529296875	2	514.78409	1027.55363	-0.1973	-0.00010157	2.2013	0.0011332	2.004	0.0010316	514.7849046611154	41.954	0.88984	41.831	41.491	42.38	-0.12299					34	23	2	0	0	0	0.027866	1	3755	3755		35.618	12.576	1	417980			72551	2371	50859	50941	79283	79283					0.04095287642917356
SKAKFINRKF	10	Unmodified	_SKAKFINRKF_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8690795898438	2	619.87204	1237.72953	-0.20812	-0.00012901	-4.1876	-0.0025958	-4.3957	-0.0027248	619.869248531336	92.303	2.2444	92.294	91.12	93.364	-0.0082855					173	53	4	0	0	0	1.1314	1	11694	11694		27.047	5.0874	1	1362300			72552	18730	50860	50942	79284	79284					0.12017064313636183
SKAKFINRKF	10	Unmodified	_SKAKFINRKF_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8698120117188	2	619.87204	1237.72953	-0.47108	-0.00029201	-3.6909	-0.0022879	-4.162	-0.0025799	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.0508	1	11765	11765		39.253	1.4413	1	4765600			72553	18730	50860	50942	79285	79285					0.12017064313636183
SKAKRKKSV	9	Unmodified	_SKAKRKKSV_					0	0	0		nc|ENSG00000060709|O15034|RIMBP2	nc|ENSG00000060709|O15034|RIMBP2	nc|ENSG00000060709|O15034|RIMBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2794189453125	2	516.337833	1030.66111	-0.093777	-4.8421E-05	2.0694	0.0010685	1.9757	0.0010201	516.3388477953634	55.344	0.12576	55.113	55.065	55.19	-0.23087					5	3	2	0	0	0	0.024344	1	5932	5932		54.776	6.8607	1	74566			72554	18054	50861	50943	79286	79286					0.14700819733798198
SKAKSLGTALN	11	Unmodified	_SKAKSLGTALN_					0	0	0			REV__LRBA-SH3D19|2|fusion;REV__nc|ENSG00000109686|Q5HYK7-3|SH3D19	REV__LRBA-SH3D19|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	545.316763	1088.61897	0.29621	0.00016153	-0.54145	-0.00029526	-0.24524	-0.00013373	545.3163527122967	87.275	2.5995	87.139	85.631	88.231	-0.13613					199	61	4	0	0	0	1.0281	1	10654	10654		30.569	0.25114	1	4888900	+		72555	36318;21809	50862	50944	79287	79287					0.07820799534783873
SKAKVIYM	8	Unmodified	_SKAKVIYM_					0	0	0		nc|ENSG00000088002|O00204-2|SULT2B1;ENSG00000088002|ENST00000201586|SULT2B1	nc|ENSG00000088002|O00204-2|SULT2B1	nc|ENSG00000088002|O00204-2|SULT2B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2724304199219	2	470.270238	938.525924	0.016273	7.6529E-06	4.478	0.0021059	4.4943	0.0021135	470.2722398350845	91.233	1.3697	91.221	90.785	92.155	-0.012383					81	32	4	0	0	0	1.0574	1	11544	11544		26.796	2.2921	1	4459900			72556	1859	50863	50945	79288	79288					0.05420203547816982
SKALPRRDKHN	11	Unmodified	_SKALPRRDKHN_					0	0	0			REV__ENST00000301180.9_1_12:51138628-51138706:+|nuORF	REV__ENST00000301180.9_1_12:51138628-51138706:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.2528076171875	3	441.253098	1320.73747	1.2654	0.00055834	-0.90714	-0.00040028	0.35823	0.00015807	441.2525954706037	110.33	0.52612	110.33	110.08	110.61	0					37	13	3	0	0	0	1.0215	2	14026	14018;14026		32.034	1.0523	1	327170	+		72557	30055	50864	50946	79289;79290	79290					0.08992591563128371
SKALPRRDKHN	11	Unmodified	_SKALPRRDKHN_					0	0	0			REV__ENST00000301180.9_1_12:51138628-51138706:+|nuORF	REV__ENST00000301180.9_1_12:51138628-51138706:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	441.253098	1320.73747	0.3312	0.00014614	-1.0871	-0.0004797	-0.75594	-0.00033356	441.2519849881727	110.32	0.4552	110.31	110.08	110.53	-0.009491	-0.057098	-0.00074259	NaN	32.034	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170540	+		72558	30055	50864	50946							0.08992591563128371
SKALVLEI	8	Unmodified	_SKALVLEI_					0	0	0		ENST00000297447.10_1_8:107738354-107738402:+|nuORF	ENST00000297447.10_1_8:107738354-107738402:+|nuORF	ENST00000297447.10_1_8:107738354-107738402:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.7750549316406	2	436.776211	871.537869	-0.98134	-0.00042863	-2.2927	-0.0010014	-3.2741	-0.00143	436.7751362763108	90.163	2.4309	90.008	89.479	91.91	-0.1552					175	57	5	0	0	0	1.0574	1	10989	10989		26.693	1.2427	1	32770000			72559	11864	50865	50947	79291	79291					0.0969614356264401
SKALVSNLI	9	Unmodified	_SKALVSNLI_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.7746887207031	2	472.792392	943.570232	0.36096	0.00017066	0.50989	0.00024107	0.87085	0.00041173	472.7923038839494	37.286	0.83635	37.093	36.851	37.687	-0.193					48	21	4	0	0	0	0.024261	1	2953	2953		45.972	6.7194	1	923640			72560	1175	50866	50948	79292	79292					0.0961893096566655
SKAQKSPQK	9	Unmodified	_SKAQKSPQK_					0	0	0		ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;chr20:36091875-36112426|431|14.13|0.59|4.58|+|ENST00000432589|EPB41L1,EPB41L1	ENSG00000088367|ENST00000338074|EPB41L1	ENSG00000088367|ENST00000338074|EPB41L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2900390625	2	501.290548	1000.56654	0.31679	0.0001588	-0.37292	-0.00018694	-0.056134	-2.814E-05	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.97973	1	10371	10371		24.519	0.99649	1	1878500			72561	1869	50867	50949	79293	79293					0.06628261191804086
SKARDSWGF	9	Unmodified	_SKARDSWGF_					0	0	0			REV__ENSG00000119812|ENST00000238823|FAM98A	REV__ENSG00000119812|ENST00000238823|FAM98A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2486572265625	2	527.259248	1052.50394	-0.2332	-0.00012295	-4.0334	-0.0021266	-4.2666	-0.0022496	527.2572722509833	33.077	0.28449	32.877	32.771	33.056	-0.20019					10	6	2	0	0	0	0.024541	1	2323	2323		16.473	0	1	112180	+		72562	22491	50868	50950	79294	79294					-0.02020884876378659
SKAREHDG	8	Unmodified	_SKAREHDG_					0	0	0			REV__ENSG00000095932|ENST00000215531|SMIM24	REV__ENSG00000095932|ENST00000215531|SMIM24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2200622558594	2	450.220123	898.425693	-0.23387	-0.00010529	0.37849	0.00017041	0.14462	6.5112E-05	450.2201553436999	26.105	1.4051	25.936	25.737	27.142	-0.16816					87	36	3	0	0	0	0.93437	3	1367	1332;1357;1367		47.657	5.0803	1	4348800	+		72563	20978	50869	50951	79295;79296;79297	79297					-0.02758317461621118
SKARRGILR	9	Unmodified	_SKARRGILR_					0	0	0		ENSG00000185610|ENST00000332700|DBX2	ENSG00000185610|ENST00000332700|DBX2	ENSG00000185610|ENST00000332700|DBX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8013305664062	2	528.841074	1055.66759	-0.51258	-0.00027107	3.1464	0.001664	2.6338	0.0013929	529.3446559974054	40.909	0.28759	40.909	40.728	41.016	0					12	7	2	0	0	0	0.024319	1	3621	3621		56.721	3.3696	1	64283			72564	9456	50870	50952	79298	79298					0.14198757685176133
SKASLRELAL	10	Unmodified	_SKASLRELAL_					0	0	0		ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF	ENSG00000023191|ENST00000354420|RNH1	ENSG00000023191|ENST00000354420|RNH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3118286132812	2	544.327131	1086.63971	-1.1605	-0.0006317	4.1518	0.0022599	2.9913	0.0016282	544.3294142577075	44.672	0.93116	44.572	43.858	44.789	-0.099445					43	24	2	0	0	0	0.03519	1	4196	4196		39.253	7.723	1	424290			72565	968	50871	50953	79299	79299					0.09985389914413645
SKAVLTTAS	9	Unmodified	_SKAVLTTAS_					0	0	0		ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.25238037109375	2	439.2531	876.491647	0.31156	0.00013685	-1.6579	-0.00072826	-1.3464	-0.00059141	439.25231035470904	90.063	1.0299	90.046	89.541	90.571	-0.016708					62	24	4	0	0	0	0.99229	1	11351	11351		21.96	1.013	1	1995100			72566	13653	50872	50954	79300	79300					0.048460786605687645
SKAVLTTAS	9	Unmodified	_SKAVLTTAS_					0	0	0		ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	ENST00000399767.5_1_22:18226574-18257190:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.252197265625	2	439.2531	876.491647	0.69602	0.00030573	-1.9582	-0.00086013	-1.2621	-0.0005544	439.25217434324423	90.16	0.91758	90.022	89.575	90.493	-0.13824					54	21	4	0	0	0	1.0019	1	11024	11024		19.997	1.6724	1	1418600			72567	13653	50872	50954	79301	79301					0.048460786605687645
SKCIKLLI	8	Unmodified	_SKCIKLLI_					0	0	0		ENST00000301923.13_2_22:40720946-40721057:+|nuORF	ENST00000301923.13_2_22:40720946-40721057:+|nuORF	ENST00000301923.13_2_22:40720946-40721057:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2688293457031	2	459.296256	916.57796	0.28247	0.00012974	2.067	0.00094934	2.3494	0.0010791	459.2971151685767	75.008	0.15808	75.018	74.934	75.092	0.010376					5	3	2	0	0	0	0.027866	1	9125	9125		17.365	0	1	59223			72568	11941	50873	50955	79302	79302					0.11633366961575575
SKCKLKKRL	9	Unmodified	_SKCKLKKRL_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3262939453125	2	552.357711	1102.70087	-0.24777	-0.00013686	0.72131	0.00039842	0.47354	0.00026156	552.3581649886648	54.028	0.27575	53.831	53.68	53.955	-0.19739					11	8	2	0	0	0	0.024541	1	5685	5685		17.365	1.7232	1	192750	+		72569	23664	50874	50956	79303	79303					0.15362623412852372
SKCLFIQGK	9	Unmodified	_SKCLFIQGK_					0	0	0		ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	ENSG00000198960|ENST00000361910|ARMCX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7503662109375	2	512.28642	1022.55829	-0.87364	-0.00044755	-0.34471	-0.00017659	-1.2184	-0.00062415	512.2861020082739	69.107	0.37259	68.845	68.586	68.959	-0.26166					13	8	2	0	0	0	0.024418	1	8012	8012		12.207	0	1	97286			72570	10265	50875	50957	79304	79304					0.047909909508234705
SKCLYCKEN	9	Unmodified	_SKCLYCKEN_					0	0	0			REV__nc|ENSG00000087206|Q96RL1-3|UIMC1	REV__nc|ENSG00000087206|Q96RL1-3|UIMC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.271240234375	2	544.249177	1086.4838	-0.47877	-0.00026057	4.1754	0.0022724	3.6966	0.0020119	544.2510817579097	55.164	0.28527	54.958	54.794	55.08	-0.20613					10	7	2	0	0	0	0.024457	1	5904	5904		29.15	1.2673	1	100450	+		72571	20792	50876	50958	79305	79305					-0.05598139922858536
SKCNIQVHS	9	Unmodified	_SKCNIQVHS_					0	0	0		nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10;ENST00000574478.1_1_17:18651366-18682393:+|nuORF	nc|ENSG00000171931|Q5XX13-3|FBXW10	nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7818603515625	2	508.253108	1014.49166	-0.26584	-0.00013511	-3.5128	-0.0017854	-3.7786	-0.0019205	508.25121398597736	41.902	0.5914	41.672	41.274	41.865	-0.23029					27	15	2	0	0	0	0.024484	1	3748	3748		17.468	0	1	434170			72572	8218	50877	50959	79306	79306					-0.01500244611065682
SKDENSDDY	9	Unmodified	_SKDENSDDY_					0	0	0		nc|ENSG00000211898|P01880|IGHD	nc|ENSG00000211898|P01880|IGHD	nc|ENSG00000211898|P01880|IGHD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.7070922851562	2	536.706908	1071.39926	-0.10521	-5.6466E-05	0.42246	0.00022674	0.31725	0.00017027	536.7069331940141	56.957	1.1033	56.754	56.365	57.469	-0.20209					74	29	5	0	0	0	0.48817	2	6201	6180;6201		60.118	1.4249	1	6400800			72573	18704	50878	50960	79307;79308	79308					-0.13358095934268022
SKDGVDLITRK	11	Unmodified	_SKDGVDLITRK_					0	0	0		ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.56304931640625	3	411.238343	1230.6932	0.5748	0.00023638	1.5709	0.000646	2.1457	0.00088238	411.57338060189676	32.589	0.28677	32.396	32.249	32.536	-0.19261					9	6	2	0	0	0	0.024723	1	2241	2241		31.068	2.4914	1	154740			72574	4881	50879	50961	79309	79309					0.08708142626232984
SKDKDKEH	8	Unmodified	_SKDKDKEH_					0	0	0			REV__ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant	REV__ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2822265625	2	493.748713	985.482873	-0.90617	-0.00044742	0.81701	0.0004034	-0.089161	-4.4023E-05	493.74903151948655	25.367	0.51063	25.14	24.842	25.352	-0.22683					17	11	2	0	0	0	0.027866	1	1176	1176		44.117	13.799	1	265570	+		72575	19166	50880	50962	79310	79310					-0.010448949759052084
SKDRSKDK	8	Unmodified	_SKDRSKDK_					0	0	0		ENST00000563857.1_1_16:2314061-2314644:-|nuORF;ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1	ENST00000563857.1_1_16:2314061-2314644:-|nuORF	ENST00000563857.1_1_16:2314061-2314644:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2882080078125	2	482.26453	962.514508	1.3085	0.00063102	2.4711	0.0011917	3.7796	0.0018228	482.26551395320206	63.399	1.1068	63.453	63.126	64.233	0.054104					68	30	4	0	0	0	0.027866	1	7299	7299		26.693	2.1737	1	1291600			72576	10457	50881	50963	79311	79311					0.03175097778046165
SKDSHRRET	9	Unmodified	_SKDSHRRET_					0	0	0		ENST00000599056.5_1_19:53571663-53571744:-|nuORF	ENST00000599056.5_1_19:53571663-53571744:-|nuORF	ENST00000599056.5_1_19:53571663-53571744:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2693481445312	2	558.281243	1114.54793	-1.0805	-0.00060325	4.2143	0.0023528	3.1338	0.0017495	558.2833225833484	33.354	0.56151	33.188	32.879	33.44	-0.16565					21	13	2	0	0	0	0.024541	1	2309	2309		10.866	0	1	220920			72577	17483	50882	50964	79312	79312					-0.004759004500328956
SKEATKAKK	9	Unmodified	_SKEATKAKK_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.7766418457031	2	495.800749	989.586944	-0.3242	-0.00016074	-3.6598	-0.0018145	-3.984	-0.0019752	495.7990190789702	27.781	0.12395	27.624	27.521	27.645	-0.15664					4	2	2	0	0	0	0.024397	1	1523	1523		39.253	20.928	1	29305	+		72578	27855	50883	50965	79313	79313					0.09173431851604619
SKEESHMVVK	10	Unmodified	_SKEESHMVVK_					0	0	0		nc|ENSG00000179676|Q7Z4B0-2|LINC00305;nc|ENSG00000179676|Q7Z4B0|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.27001953125	2	587.300255	1172.58596	-1.3128	-0.00077099	2.1392	0.0012563	0.8264	0.00048535	587.8030333359886	60.703	0.67825	60.449	60.253	60.931	-0.25374					22	16	2	0	0	0	0.03519	1	6771	6771		24.519	6.2571	1	196070			72579	18556	50884	50966	79314	79314					0.006568494203975206
SKEESHMVVK	10	Unmodified	_SKEESHMVVK_					0	0	0		nc|ENSG00000179676|Q7Z4B0-2|LINC00305;nc|ENSG00000179676|Q7Z4B0|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	587.300255	1172.58596	-0.33864	-0.00019888	6.4639	0.0037962	6.1253	0.0035974	587.3041034229809	60.029	0.45404	60.108	59.826	60.28	0.078888	-0.10459	0.0008448	NaN	31.53	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148790			72580	18556	50884	50966							0.006568494203975206
SKEESHMVVK	10	Unmodified	_SKEESHMVVK_					0	0	0		nc|ENSG00000179676|Q7Z4B0-2|LINC00305;nc|ENSG00000179676|Q7Z4B0|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	587.300255	1172.58596	-0.039815	-2.3383E-05	6.2218	0.0036541	6.182	0.0036307	587.8050910812303	60.242	0.18871	60.045	59.911	60.1	-0.19742	-0.16749	0.00056041	NaN	31.53	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146200			72581	18556	50884	50966							0.006568494203975206
SKEESHMVVK	10	Unmodified	_SKEESHMVVK_					0	0	0		nc|ENSG00000179676|Q7Z4B0-2|LINC00305;nc|ENSG00000179676|Q7Z4B0|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	nc|ENSG00000179676|Q7Z4B0-2|LINC00305	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	587.300255	1172.58596	-1.6448	-0.000966	2.3706	0.0013922	0.72577	0.00042625	587.302005348443	60.424	0.55857	60.248	60.116	60.674	-0.1761	0.035313	-0.0039632	NaN	31.53	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140550			72582	18556	50884	50966							0.006568494203975206
SKEGYYTY	8	Unmodified	_SKEGYYTY_					0	0	0		ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.80291748046875	2	505.726915	1009.43928	-0.56526	-0.00028587	-3.2816	-0.0016596	-3.8468	-0.0019454	505.7244915462885	43.337	0.18737	43.1	43.024	43.211	-0.23736					5	4	2	0	0	0	0.027866	1	3961	3961		16.473	0	1	26237			72583	4167	50885	50967	79315	79315					-0.0650650447305452
SKEKKVVKP	9	Unmodified	_SKEKKVVKP_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.830078125	2	521.834591	1041.65463	0.17049	8.8965E-05	-0.80768	-0.00042147	-0.63719	-0.00033251	521.834113698812	21.637	0.3377	21.446	21.275	21.613	-0.19072					10	6	2	0	0	0	0.024541	1	673	673		15.642	1.5047	1	12825			72584	4940	50886	50968	79316	79316					0.13546881782417586
SKEKKVVKP	9	Unmodified	_SKEKKVVKP_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.I1573Lfs*3|1|0.14|ENSG00000135837|chr1:180048629-180048630|-/TTAGTTTA|frameshift_variant;CEP350|p.D1574Rfs*8|1|0.09|ENSG00000135837|chr1:180048631-180048632|-/TAGATCCCATTTGTCAATTTTG|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.834591	1041.65463	-1.0047	-0.00052427	0.93416	0.00048748	-0.070504	-3.6791E-05	521.834862986987	21.684	0.24084	21.471	21.266	21.506	-0.2128	0.012292	0.0013987	NaN	26.693	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19830			72585	4940	50886	50968							0.13546881782417586
SKELSHVDL	9	Unmodified	_SKELSHVDL_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2943115234375	2	514.274564	1026.53457	-0.32381	-0.00016653	3.6262	0.0018649	3.3024	0.0016983	514.2762253461497	53.862	0.30132	53.665	53.588	53.889	-0.19739					12	9	2	0	0	0	0.024427	1	5674	5674		19.997	2.6318	1	133740			72586	9241	50887	50969	79317	79317					0.022368487179846852
SKEMRYQY	8	Unmodified	_SKEMRYQY_					0	0	0			REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3262939453125	2	552.760766	1103.50698	-0.4357	-0.00024084	-2.1885	-0.0012097	-2.6242	-0.0014506	552.7593322746377	53.789	0.77763	53.592	53.049	53.827	-0.19739					31	22	2	0	0	0	0.027866	1	5685	5685		18.324	0	1	1736700	+		72587	25495	50888	50970	79318	79318					-0.040633778138726484
SKENKKVSL	9	Unmodified	_SKENKKVSL_					0	0	0		ENST00000528436.1_1_15:79229817-79237323:-|nuORF	ENST00000528436.1_1_15:79229817-79237323:-|nuORF	ENST00000528436.1_1_15:79229817-79237323:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.28955078125	2	516.806031	1031.59751	-0.090806	-4.6929E-05	0.32101	0.0001659	0.23021	0.00011897	516.8060304177997	34.233	0.93778	34.228	33.869	34.807	-0.0045624					40	23	3	0	0	0	0.024447	1	2491	2491		32.812	3.6629	1	1325800			72588	16181	50889	50971	79319	79319					0.08297414506046152
SKENRGVLV	9	Unmodified	_SKENRGVLV_					0	0	0			REV__ENST00000375712.3_1_20:30919609-30919765:+|nuORF	REV__ENST00000375712.3_1_20:30919609-30919765:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2578430175781	2	501.290548	1000.56654	1.6062	0.00080519	-2.0245	-0.0010149	-0.4183	-0.00020969	501.28951609253915	23.965	1.1233	23.784	23.294	24.418	-0.18089					61	25	4	0	0	0	0.024436	1	1003	1003		30.504	18.297	1	532510	+		72589	31331	50890	50972	79320	79320					0.06628261191804086
SKERERTK	8	Unmodified	_SKERERTK_					0	0	0		MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	MCM3AP|p.R1145Tfs*10|1|0.31|ENSG00000160294|chr21:46261313-46261314|-/TTCG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7808227539062	2	517.291079	1032.56761	-0.60513	-0.00031303	3.4862	0.0018034	2.8811	0.0014904	517.2927165297069	42.178	0.40564	42.204	42.088	42.493	0.026012					17	11	2	0	0	0	0.027866	1	3785	3785		14.865	0	1	140770			72590	17957	50891	50973	79321	79321					0.05262475560698476
SKERPFSCW	9	Unmodified	_SKERPFSCW_					0	0	0		ZNF786|p.G568W|1|0.17|ENSG00000197362|chr7:149071070-149071070|C/A|missense_variant	ZNF786|p.G568W|1|0.17|ENSG00000197362|chr7:149071070-149071070|C/A|missense_variant	ZNF786|p.G568W|1|0.17|ENSG00000197362|chr7:149071070-149071070|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.29345703125	2	570.268758	1138.52296	0.029659	1.6913E-05	-0.39937	-0.00022775	-0.36971	-0.00021083	570.7697368506797	45.465	0.38148	45.212	44.944	45.325	-0.25252					15	10	2	0	0	0	0.024477	1	4265	4265		20.947	3.582	1	204640			72591	38209	50892	50974	79322	79322					-0.04075671576970308
SKETIAVS	8	Unmodified	_SKETIAVS_					0	0	0			REV__ENST00000450180.5_1_7:37723423-37724800:+|nuORF	REV__ENST00000450180.5_1_7:37723423-37724800:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	417.73284912109375	2	417.732	833.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.595	1	39.37	38.87	39.87	-0.2257								0	0	0	0.5562	1	3349	3349		51.335	10.763	1		+		72592	32694	50893	50975	79323	79323					0.0260610325219659
SKEYFEYI	8	Unmodified	_SKEYFEYI_					0	0	0		ENST00000463254.1_1_2:166615181-166618484:-|nuORF;ENSG00000115339|ENST00000392701|GALNT3	ENST00000463254.1_1_2:166615181-166618484:-|nuORF	ENST00000463254.1_1_2:166615181-166618484:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.3084716796875	2	539.758215	1077.50188	-0.23144	-0.00012492	-2.5549	-0.001379	-2.7863	-0.0015039	539.7565286395005	72.489	0.48698	72.489	72.211	72.698	0					14	11	2	0	0	0	0.027866	1	8811	8811		35.618	2.8059	1	148240			72593	3436	50894	50976	79324	79324					-0.03377358404873121
SKFAVALCL	9	Unmodified	_SKFAVALCL_					0	0	0			REV__ENSG00000136937|ENST00000375147|NCBP1	REV__ENSG00000136937|ENST00000375147|NCBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.25384521484375	2	476.270238	950.525924	0.69876	0.0003328	4.1865	0.0019939	4.8853	0.0023267	476.2719433405287	22.076	0.42636	21.887	21.628	22.055	-0.18894					11	8	2	0	0	0	0.024397	1	766	766		39.253	0	1	29293	+		72594	23710	50895	50977	79325	79325					0.048682035478236685
SKFCEETF	8	Unmodified	_SKFCEETF_					0	0	0		ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.30059814453125	2	495.715493	989.416433	-0.66152	-0.00032792	0.69495	0.0003445	0.033438	1.6576E-05	495.71581299156884	64.715	0.4718	64.48	64.256	64.728	-0.2345					14	11	2	0	0	0	0.027866	1	7361	7361		10.866	0	1	91406			72595	6432	50896	50978	79326	79326					-0.0786984686217238
SKFCMMAKL	9	Unmodified	_SKFCMMAKL_					0	0	0		ENST00000392865.5_1_10:121259447-121259606:-|nuORF	ENST00000392865.5_1_10:121259447-121259606:-|nuORF	ENST00000392865.5_1_10:121259447-121259606:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.7989501953125	2	529.763409	1057.51226	-1.3857	-0.00073409	1.3426	0.00071124	-0.043118	-2.2842E-05	529.7637681063769	83.628	0.68848	83.628	83.309	83.997	0					41	15	4	0	0	0	0.024261	1	10454	10454		64.207	5.4253	1	652870			72596	13430	50897	50979	79327	79327					-0.014191135472856331
SKFKFTSDNT	10	Unmodified	_SKFKFTSDNT_					0	0	0			REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF	REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	586.8054809570312	2	587.790578	1173.5666	-1.4323	-0.00084187	-4.3173	-0.0025377	-5.7496	-0.0033795	587.7881151069464	75.833	0.53663	75.589	75.374	75.911	-0.24455					32	14	3	0	0	0	0.03519	1	9336	9336		46.457	19.764	1	735820	+		72597	32942	50898	50980	79328	79328					-0.013237835988547886
SKFKFTSDNT	10	Unmodified	_SKFKFTSDNT_					0	0	0			REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF	REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	587.790578	1173.5666	-2.2142	-0.0013015	-2.9632	-0.0017417	-5.1774	-0.0030432	587.7889917882214	75.589	0.54034	75.589	75.378	75.918	0	-0.013631	0.0016631	NaN	25.126	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806700	+		72598	32942	50898	50980							-0.013237835988547886
SKFKFTSDNT	10	Unmodified	_SKFKFTSDNT_					0	0	0			REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF	REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	587.790578	1173.5666	1.1482	0.00067492	-6.5649	-0.0038588	-5.4167	-0.0031839	587.7867752180365	75.619	0.4621	75.629	75.399	75.861	0.010368	0.027006	-0.0025709	NaN	25.126	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910980	+		72599	32942	50898	50980							-0.013237835988547886
SKFKSRERHEV	11	Unmodified	_SKFKSRERHEV_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.2629699707031	3	468.256508	1401.7477	0.27887	0.00013058	2.0436	0.00095695	2.3225	0.0010875	468.25827416407407	50.512	0.62686	50.406	50.238	50.865	-0.10588					19	16	2	0	0	0	0.024809	1	5188	5188		12.433	4.0256	1	590400	+		72600	20894	50899	50981	79329	79329					0.06289154497676464
SKFKVLKAL	9	Unmodified	_SKFKVLKAL_					0	0	0		ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	ENSG00000284024|ENST00000640019|MSANTD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7810668945312	2	517.342052	1032.66955	-0.27394	-0.00014172	-0.039682	-2.0529E-05	-0.31363	-0.00016225	517.3420589851602	42.243	0.42847	42.111	41.857	42.285	-0.13219					20	12	2	0	0	0	0.024541	1	3809	3809		19.997	0	1	109060			72601	11092	50900	50982	79330	79330					0.1545237365041885
SKFPKDGFS	9	Unmodified	_SKFPKDGFS_					0	0	0		ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.7580871582031	2	506.758549	1011.50255	-0.88892	-0.00045047	0.53084	0.00026901	-0.35808	-0.00018146	506.75868152195847	27.681	1.6698	27.513	27.142	28.812	-0.16816					130	39	4	0	0	0	0.23085	1	1601	1601		84.916	0	1	2535500			72602	11047	50901	50983	79331	79331					-0.002745189651477631
SKFTLGLVMFV	11	Unmodified	_SKFTLGLVMFV_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|302|3|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|302|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3497924804688	2	621.35176	1240.68897	0.49653	0.00030852	-3.5716	-0.0022192	-3.0751	-0.0019107	621.3493597922452	102.98	0.43923	102.85	102.63	103.07	-0.12724					26	10	3	0	0	0	1.0371	1	12798	12798		13.454	5.7638	1	1207500	+		72603	19325	50902	50984	79332	79332					0.07824961878986869
SKGCQKCECPK	11	Unmodified	_SKGCQKCECPK_					0	0	0			REV__ENSG00000171295|ENST00000304060|ZNF440	REV__ENSG00000171295|ENST00000304060|ZNF440	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.7716674804688	2	605.772493	1209.53043	-0.87206	-0.00052827	1.418	0.00085896	0.5459	0.00033069	605.7730300585715	58.112	0.68253	57.935	57.636	58.318	-0.17775					27	16	2	0	0	0	0.67171	1	6378	6378		65.465	3.358	1	2691300	+		72604	26557	50903	50985	79333	79333					-0.0659502336325204
SKGCQKCECPK	11	Unmodified	_SKGCQKCECPK_					0	0	0			REV__ENSG00000171295|ENST00000304060|ZNF440	REV__ENSG00000171295|ENST00000304060|ZNF440	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	605.7716674804688	2	605.772493	1209.53043	-0.87206	-0.00052827	1.418	0.00085896	0.5459	0.00033069	605.7730300585715	58.112	0.68253	57.935	57.636	58.318	-0.17775					27	16	2	0	0	0	0.024643	1	6378	6378		65.465	19.493	1	2691300	+		72605	26557	50903	50985	79334	79334					-0.0659502336325204
SKGDEDIQNW	10	Unmodified	_SKGDEDIQNW_					0	0	0			REV__ENSG00000166676|ENST00000299866|TVP23A	REV__ENSG00000166676|ENST00000299866|TVP23A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.3607177734375	2	596.267467	1190.52038	-0.75668	-0.00045118	1.4025	0.00083625	0.6458	0.00038507	596.2684993044218	58.839	0.83917	58.651	58.18	59.019	-0.18795					55	20	3	0	0	0	0.03519	1	6489	6489		45.972	18.09	1	1683700	+		72606	26041	50904	50986	79335	79335					-0.06725848500923348
SKGGGGAG	8	Unmodified	_SKGGGGAG_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10;DOCK10|p.S1451Lfs*9|1|0.31|ENSG00000135905|chr2:224801958-224801958|A/-|frameshift_variant;nc|ENSG00000135905|Q96BY6-2|DOCK10;ENST00000492369.5_1_2:225727286-225907091:-|nuORF	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.3111572265625	1	590.289265	589.281989	-0.91966	-0.00054286	3.0848	0.0018209	2.1652	0.0012781	590.2911408117981	76.84	0.12573	76.672	76.61	76.735	-0.16854					4	2	2	0	0	0	0.027866	1	9129	9129		7.6903	0	1	24064			72607	4946	50905	50987	79336	79336					-0.029081195018989092
SKGGYFSVNL	10	Unmodified	_SKGGYFSVNL_					0	0	0		nc|nan|Q6P1S2-2|C3orf33;ENSG00000174928|ENST00000340171|C3orf33	nc|nan|Q6P1S2-2|C3orf33	nc|nan|Q6P1S2-2|C3orf33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.8158569335938	2	536.277106	1070.53966	-0.053976	-2.8946E-05	0.66894	0.00035874	0.61497	0.00032979	536.2776950824256	71.658	0.52223	71.383	71.144	71.666	-0.2751					22	12	3	0	0	0	0.03519	1	8385	8385		36.447	15.5	1	187420			72608	8509	50906	50988	79337	79337					0.007211525806042118
SKGKHLDGTE	10	Unmodified	_SKGKHLDGTE_					0	0	0			REV__BMS1|p.V791L|1|0.3|ENSG00000165733|chr10:42816640-42816640|G/T|missense_variant	REV__BMS1|p.V791L|1|0.3|ENSG00000165733|chr10:42816640-42816640|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.29296875	2	536.275095	1070.53564	-1.6418	-0.00088046	-1.3519	-0.00072501	-2.9937	-0.0016055	536.2744973342235	44.651	0.50813	44.502	44.288	44.796	-0.1488					17	14	2	0	0	0	0.03519	1	4267	4267		18.262	8.5564	1	137840	+		72609	19214	50907	50989	79338	79338					0.0031906308690849983
SKGRRRLSP	9	Unmodified	_SKGRRRLSP_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2587280273438	2	528.822881	1055.63121	-0.24029	-0.00012707	2.4685	0.0013054	2.2283	0.0011784	528.8241145904809	61.527	0.65819	61.313	61.042	61.7	-0.21375					33	15	3	0	0	0	0.024477	1	6921	6921		44.117	8.4985	1	604780			72610	3553	50908	50990	79339	79339					0.10561880788463895
SKGSVVKRN	9	Unmodified	_SKGSVVKRN_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7908020019531	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.96906	1	10347	10347		26.693	26.693	1	2003200			72611	3320	50909	50991	79340	79340					0.07903680911658739
SKGTELVK	8	Unmodified	_SKGTELVK_					0	0	0			REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF	REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.8860168457031	2	431.255643	860.496732	0.36238	0.00015628	1.7487	0.00075414	2.1111	0.00091042	431.25615978178683	21.119	1.3094	21.191	20.86	22.17	0.071487					42	26	3	0	0	0	0.027866	1	682	682		29.15	0	1	87693	+		72612	32243	50910	50992	79341	79341					0.06090382523200333
SKHAAQLKRLS	11	Unmodified	_SKHAAQLKRLS_					0	0	0		sp|P03177|KITH_EBVB9ThymidinekinaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TKPE=3SV=2	sp|P03177|KITH_EBVB9ThymidinekinaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TKPE=3SV=2	sp|P03177|KITH_EBVB9ThymidinekinaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TKPE=3SV=2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8701171875	2	619.870028	1237.7255	-0.14808	-9.1793E-05	-0.38133	-0.00023638	-0.52942	-0.00032817	619.8695806131489	97.172	1.0765	97.011	96.684	97.76	-0.16106					51	23	3	0	0	0	1.0557	1	12022	12022		23.523	1.5628	1	207720			72613	37916	50911	50993	79342	79342					0.11614974819940471
SKHKTVAVAS	10	Unmodified	_SKHKTVAVAS_					0	0	0		nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.29833984375	2	514.298373	1026.58219	-0.36934	-0.00018995	0.18582	9.5565E-05	-0.18353	-9.4387E-05	514.2984210471764	95.192	0.68699	95.192	94.875	95.562	0					46	15	4	0	0	0	1.1265	1	12132	12132		24.519	0	1	1249400			72614	18133	50912	50994	79343	79343					0.0699654770885445
SKHKTVAVAS	10	Unmodified	_SKHKTVAVAS_					0	0	0		nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.298583984375	2	514.298373	1026.58219	-0.2643	-0.00013593	0.11219	5.7701E-05	-0.15211	-7.823E-05	514.2983788996071	95.184	0.77753	95.188	94.791	95.569	0.0041199					50	17	4	0	0	0	1.1266	1	12041	12041		29.17	0.020503	1	1155800			72615	18133	50912	50994	79344	79344					0.0699654770885445
SKHKYQSRESF	11	Unmodified	_SKHKYQSRESF_					0	0	0		nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;ENSG00000122728|ENST00000242310|TAF1L;ENST00000468167.5_1_X:70643008-70674023:+|nuORF	nc|ENSG00000147133|P21675-25|TAF1	nc|ENSG00000147133|P21675-25|TAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2879943847656	3	466.237114	1395.68951	-0.051405	-2.3967E-05	-1.0995	-0.00051264	-1.1509	-0.00053661	466.236344736041	75.931	0.30121	75.756	75.584	75.885	-0.17548					10	7	2	0	0	0	0.024792	1	9006	9006		9.2118	3.7989	1	211250			72616	5937	50913	50995	79345	79345					0.007494728524079619
SKHLKKWKTI	10	Unmodified	_SKHLKKWKTI_					0	0	0		ENST00000261425.7_2_4:39064576-39077703:+|nuORF	ENST00000261425.7_2_4:39064576-39077703:+|nuORF	ENST00000261425.7_2_4:39064576-39077703:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.5976257324219	3	423.599435	1267.77648	-0.0915	-3.8759E-05	-4.0618	-0.0017206	-4.1533	-0.0017593	423.59765141648836	104.3	0.77709	104.3	103.98	104.76	0.0031357					56	20	4	0	0	0	1.1308	1	13347	13347		26.75	4.9693	1	959290			72617	11472	50914	50996	79346	79346					0.15329923864783268
SKHRPKERI	9	Unmodified	_SKHRPKERI_					0	0	0			REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	575.843813	1149.67307	-0.05705	-3.2852E-05	-1.4529	-0.00083662	-1.5099	-0.00086947	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.87448	1	10899	10899		34.173	1.3601	1	1877500	+		72618	24631	50915	50997	79347	79347					0.10422436476983421
SKHWATHI	8	Unmodified	_SKHWATHI_					0	0	0		ENST00000482601.1_1_2:144885858-144903287:-|nuORF	ENST00000482601.1_1_2:144885858-144903287:-|nuORF	ENST00000482601.1_1_2:144885858-144903287:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2580871582031	2	490.259051	978.503549	0.0031706	1.5544E-06	-1.6739	-0.00082063	-1.6707	-0.00081908	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	0.96719	1	13444	13444		42.474	5.3154	1	6674100			72619	15264	50916	50998	79348	79348					0.013437401944315752
SKHWLETM	8	Unmodified	_SKHWLETM_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.27001953125	2	516.252577	1030.4906	-0.43855	-0.0002264	-0.84699	-0.00043726	-1.2855	-0.00066366	516.2519981566085	51.25	0.22179	51.101	50.933	51.155	-0.14916					9	5	2	0	0	0	0.027866	1	5396	5396		76.847	11.043	1	75135	+		72620	20585	50917	50999	79349	79349					-0.02342458979978801
SKHYRSPPRP	10	Unmodified	_SKHYRSPPRP_					0	0	0		nc|ENSG00000148386|Q8WX39|LCN9	nc|ENSG00000148386|Q8WX39|LCN9	nc|ENSG00000148386|Q8WX39|LCN9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.7984008789062	2	612.833446	1223.65234	-1.39	-0.00085182	-2.8719	-0.00176	-4.2618	-0.0026118	612.8315512194476	58.678	0.36635	58.49	58.18	58.546	-0.18795					13	8	3	0	0	0	0.03519	1	6449	6449		9.1829	8.4927	1	419180			72621	18370	50918	51000	79350	79350					0.049458460973028195
SKICMARSN	9	Unmodified	_SKICMARSN_					0	0	0		ENST00000423924.1_1_9:99449583-99483317:+|nuORF	ENST00000423924.1_1_9:99449583-99483317:+|nuORF	ENST00000423924.1_1_9:99449583-99483317:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3110656738281	2	505.249511	1008.48447	-0.70492	-0.00035616	3.4599	0.0017481	2.755	0.001392	505.25114634456736	34.962	1.2173	34.962	34.552	35.769	0					47	31	2	0	0	0	0.024409	1	2714	2714		41.427	7.2541	1	3670000			72622	14032	50919	51001	79351	79351					-0.019433004831626022
SKIEIRFG	8	Unmodified	_SKIEIRFG_					0	0	0			REV__NKTR|p.L1262F|1|0.36|ENSG00000114857|chr3:42639490-42639490|G/C|missense_variant	REV__NKTR|p.L1262F|1|0.36|ENSG00000114857|chr3:42639490-42639490|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.2790832519531	2	475.276909	948.539266	0.95705	0.00045486	2.393	0.0011374	3.3501	0.0015922	475.2779341742927	16.366	0.17191	16.218	16.085	16.257	-0.14753					9	6	2	0	0	0	1.0574	1	58	58		20.482	3.1169	1	26436	+		72623	37283	50920	51002	79352	79352					0.06293777651433174
SKIFLIAKQ	9	Unmodified	_SKIFLIAKQ_					0	0	0		ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3031005859375	2	524.331685	1046.64882	1.6372	0.00085846	-0.79107	-0.00041478	0.84617	0.00044367	524.33110324404	63.616	0.35579	63.67	63.447	63.803	0.054104					11	9	2	0	0	0	0.024541	1	7376	7376		19.104	0	1	87581			72624	5876	50921	51003	79353	79353					0.1273578327075029
SKIKKELIEK	10	Unmodified	_SKIKKELIEK_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2109680175781	3	405.927218	1214.75982	-0.40739	-0.00016537	-2.4761	-0.0010051	-2.8835	-0.0011705	406.2611596044179	27.336	0.46061	27.179	26.93	27.391	-0.15664					15	10	2	0	0	0	0.03519	1	1470	1470		17.167	0	1	51950			72625	761	50922	51004	79354	79354					0.16103378188176976
SKILKKHMSK	10	Unmodified	_SKILKKHMSK_					0	0	0		ENSG00000132604|ENST00000254942|TERF2;nc|ENSG00000132604|Q15554-4|TERF2	ENSG00000132604|ENST00000254942|TERF2	ENSG00000132604|ENST00000254942|TERF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.9159240722656	3	400.581276	1198.722	0.70334	0.00028175	-2.6089	-0.0010451	-1.9055	-0.00076332	400.5801374909674	110.7	0.47864	110.58	110.51	110.99	-0.12525					42	17	3	0	0	0	1.1244	1	13634	13634		23.378	0.79825	1	1160800			72626	4626	50923	51005	79355	79355					0.1305858872169665
SKILLTPSST	10	Unmodified	_SKILLTPSST_					0	0	0			REV__nc|ENSG00000212643|Q15695|ZRSR2P1	REV__nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2692260742188	2	523.808239	1045.60193	-1.2699	-0.00066521	1.6724	0.00087601	0.40246	0.00021081	523.8089245031709	35.608	0.65819	35.586	35.159	35.817	-0.021763					30	16	3	0	0	0	0.03519	1	2685	2685		24.519	0.31644	1	268210	+		72627	26343	50924	51006	79356	79356					0.08094878928932303
SKILTVRVI	9	Unmodified	_SKILTVRVI_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2942504882812	2	514.844959	1027.67537	-1.0449	-0.00053796	0.58345	0.00030039	-0.46145	-0.00023757	514.8450891499665	53.696	0.29256	53.56	53.428	53.721	-0.13617					15	8	2	0	0	0	0.024539	1	5657	5657		14.865	0	1	321980			72628	10951	50925	51007	79357	79357					0.16263472162086146
SKIRGLPPEVR	11	Unmodified	_SKIRGLPPEVR_					0	0	0		ENSG00000205085|ENST00000682356|GARIN1A;nc|ENSG00000205085|Q6NXP2|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	626.379150390625	2	626.380229	1250.7459	0.42062	0.00026347	-1.3282	-0.00083195	-0.90756	-0.00056848	626.3792952337366	104.3	0.95153	104.3	103.98	104.93	0.0031357					73	26	4	0	0	0	1.053	1	13373	13373		20.837	0	1	2383900			72629	10403	50926	51008	79358	79358					0.1305614547973164
SKIRYQLPL	9	Unmodified	_SKIRYQLPL_					0	0	0		ENST00000487247.5_1_7:75612754-75613000:+|nuORF	ENST00000487247.5_1_7:75612754-75613000:+|nuORF	ENST00000487247.5_1_7:75612754-75613000:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2984008789062	2	559.340041	1116.66553	0.23391	0.00013083	-2.9529	-0.0016517	-2.7189	-0.0015208	559.3383164615254	19.419	0.8905	19.258	18.589	19.48	-0.16079					20	17	2	0	0	0	0.024381	1	385	385		37.159	29.469	1	181160			72630	15361	50927	51009	79359	79359					0.11186284156701731
SKITICREQ	9	Carbamidomethyl (C)	_SKITIC(Carbamidomethyl (C))REQ_	SKITIC(1)REQ		SKITIC(110)REQ		0	1	0			REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.7999267578125	2	567.800423	1133.58629	0.21347	0.00012121	0.77298	0.0004389	0.98645	0.00056011	567.8007352376492	71.4	0.83344	71.125	70.833	71.666	-0.27509					46	19	3	0	0	0	0.10464	1	8331	8331		109.48	10.103	1	1462600	+		72631	19731	50928	51010	79360	79360	249				0.024842691402454875
SKITICREQ	9	Carbamidomethyl (C)	_SKITIC(Carbamidomethyl (C))REQ_					0	1	0			REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	567.800423	1133.58629	0.21347	0.00012121	0.77298	0.0004389	0.98645	0.00056011	567.8007352376492	71.4	0.83344	71.125	70.833	71.666	-0.27509	0.050023	5.604E-05	NaN	109.48	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1462600	+		72632	19731	50928	51010			249				0.024842691402454875
SKITICREQ	9	Carbamidomethyl (C)	_SKITIC(Carbamidomethyl (C))REQ_					0	1	0			REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	REV__EEF2|p.I297Hfs*6|1|0.29|ENSG00000167658|chr19:3981955-3981956|-/G|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	567.800423	1133.58629	0.13715	7.7873E-05	0.87673	0.00049781	1.0139	0.00057568	567.8007984834163	71.358	0.69243	71.096	70.867	71.559	-0.26199	0.021047	0.00017386	NaN	109.48	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1712700	+		72633	19731	50928	51010			249				0.024842691402454875
SKITLSPFA	9	Unmodified	_SKITLSPFA_					0	0	0		ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2625732421875	2	482.279118	962.543683	-0.62055	-0.00029928	-2.7197	-0.0013116	-3.3402	-0.0016109	482.2786633849774	35.613	0.28727	35.657	35.535	35.822	0.044056					9	6	2	0	0	0	0.024367	1	2704	2704		44.377	0	1	27403			72634	9774	50929	51011	79361	79361					0.06091242074319325
SKITVIILM	9	Unmodified	_SKITVIILM_					0	0	0			REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.32293701171875	2	509.322471	1016.63039	-0.39813	-0.00020278	0.65628	0.00033426	0.25815	0.00013148	509.32286050156773	78.341	0.65765	78.341	78.042	78.7	0					44	15	4	0	0	0	0.37611	1	9694	9694		67.494	1.6905	1	3718500	+		72635	26644	50930	51012	79362	79362					0.12273905304550681
SKITVIILM	9	Unmodified	_SKITVIILM_					0	0	0			REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	REV__OR4C11|p.K233Rfs*10|1|0.92|ENSG00000172188|chr11:55603676-55603676|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.3229675292969	2	509.322471	1016.63039	0.23757	0.000121	-0.96108	-0.0004895	-0.7235	-0.0003685	509.32184753805416	78.344	0.5123	78.112	77.877	78.389	-0.23141					19	11	2	0	0	0	0.53979	1	9361	9361		56.721	1.2168	1	1047800	+		72636	26644	50930	51012	79363	79363					0.12273905304550681
SKIVIAVIK	9	Unmodified	_SKIVIAVIK_					0	0	0		nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141;CCDC141|p.K598Nfs*12|1|0.05|ENSG00000163492|chr2:178878069-178878070|-/ACCTTTCAGTAGGGTATTGAAATTGCATTTTG|frameshift_variant;CCDC141|p.Q791Sfs*21|1|0.2|ENSG00000163492|chr2:178869140-178869140|G/-|frameshift_variant	nc|ENSG00000163492|Q6ZP82-1|CCDC141	nc|ENSG00000163492|Q6ZP82-1|CCDC141	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.29071044921875	2	485.836603	969.658653	-0.33934	-0.00016487	0.20807	0.00010109	-0.13127	-6.3777E-05	485.83661434416143	33.74	1.1642	33.54	33.209	34.373	-0.20019					79	29	4	0	0	0	0.024541	1	2548	2548		21.96	1.9631	1	5154200			72637	7088	50931	51013	79364	79364					0.1726097127614139
SKIVKNVAE	9	Unmodified	_SKIVKNVAE_					0	0	0			REV__ENSG00000161057|ENST00000292644|PSMC2	REV__ENSG00000161057|ENST00000292644|PSMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7405090332031	2	494.295299	986.576045	0.16279	8.0464E-05	-0.087593	-4.3297E-05	0.075192	3.7167E-05	494.29514094911957	53.427	0.88977	53.168	52.843	53.733	-0.25838					50	24	3	0	0	0	0.024257	1	5614	5614		58.23	3.4536	1	2485800	+		72638	25374	50932	51014	79365	79365					0.08222029477326487
SKIVQNVPS	9	Unmodified	_SKIVQNVPS_					0	0	0		ENST00000590367.5_1_17:42931463-42950195:-|nuORF	ENST00000590367.5_1_17:42931463-42950195:-|nuORF	ENST00000590367.5_1_17:42931463-42950195:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2687072753906	2	486.279649	970.544745	-0.04133	-2.0098E-05	-0.42166	-0.00020505	-0.46299	-0.00022514	486.2792818095006	53.732	0.53535	53.732	53.474	54.01	0					24	14	2	0	0	0	0.024427	1	5823	5823		42.396	7.2441	1	1029300			72639	17331	50933	51015	79366	79366					0.05829456443234449
SKIVVKKEA	9	Unmodified	_SKIVVKKEA_					0	0	0			REV__ENSG00000176692|ENST00000649859|FOXC2	REV__ENSG00000176692|ENST00000649859|FOXC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2747497558594	2	501.321317	1000.62808	-0.43713	-0.00021914	-0.97639	-0.00048949	-1.4135	-0.00070863	501.32052628342916	34.976	0.52231	34.764	34.44	34.963	-0.21246					28	12	3	0	0	0	0.024541	1	2586	2586		9.7057	0	1	217250	+		72640	27039	50934	51016	79367	79367					0.12779192891082403
SKIYIKYL	8	Unmodified	_SKIYIKYL_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2944946289062	2	514.312961	1026.61137	-1.1463	-0.00058957	1.7076	0.00087825	0.5613	0.00028868	514.3131656564157	53.813	0.31765	53.677	53.462	53.779	-0.13617					12	9	2	0	0	0	0.027866	1	5669	5669		40.573	1.7665	1	162350			72641	11712	50935	51017	79368	79368					0.0991269200512761
SKIYIKYL	8	Unmodified	_SKIYIKYL_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.312961	1026.61137	0.019425	9.9903E-06	-3.6375	-0.0018708	-3.6181	-0.0018608	514.3106833492219	54.23	0.41487	54.083	53.855	54.27	-0.14723	0.13024	-0.0012044	NaN	32.812	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901710			72642	11712	50935	51017							0.0991269200512761
SKIYIKYL	8	Unmodified	_SKIYIKYL_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.312961	1026.61137	-0.21203	-0.00010905	-3.1695	-0.0016301	-3.3815	-0.0017392	514.3108209504164	53.927	0.37976	54.025	53.808	54.188	0.098015	0.07161	-0.00072298	NaN	32.812	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1465300			72643	11712	50935	51017							0.0991269200512761
SKIYIKYL	8	Unmodified	_SKIYIKYL_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.312961	1026.61137	-0.059181	-3.0437E-05	-4.4279	-0.0022773	-4.487	-0.0023077	514.3106962119795	54.254	0.24615	54.008	53.92	54.166	-0.2453	0.055356	-0.0020174	NaN	32.812	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185980			72644	11712	50935	51017							0.0991269200512761
SKIYIKYL	8	Unmodified	_SKIYIKYL_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.312961	1026.61137	0.13593	6.9909E-05	-2.9809	-0.0015331	-2.845	-0.0014632	514.3110664143464	54.17	0.34139	53.972	53.827	54.168	-0.19739	0.019159	-0.00052902	NaN	32.812	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236020			72645	11712	50935	51017							0.0991269200512761
SKIYPVDLI	9	Unmodified	_SKIYPVDLI_					0	0	0			REV__nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	REV__nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2691040039062	2	524.307875	1046.6012	-1.3102	-0.00068695	-2.3136	-0.001213	-3.6238	-0.0019	524.306308225374	35.194	0.97884	35.194	34.629	35.608	0					45	25	3	0	0	0	0.024506	1	2699	2699		23.042	10.083	1	289250	+		72646	20292	50936	51018	79369	79369					0.07976084279880524
SKKAKKMI	8	Unmodified	_SKKAKKMI_					0	0	0		ENST00000514918.5_1_5:74063185-74065204:+|nuORF;ENST00000513356.1_1_5:74063185-74067331:+|nuORF;ENSG00000164346|ENST00000610426|NSA2	ENST00000514918.5_1_5:74063185-74065204:+|nuORF	ENST00000514918.5_1_5:74063185-74065204:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.3000793457031	2	467.29933	932.584108	0.99819	0.00046645	1.83	0.00085517	2.8282	0.0013216	467.3000383657387	92.166	1.0564	92.175	91.832	92.888	0.0094147					68	25	4	0	0	0	1.0574	1	11611	11611		23.042	4.7181	1	1808300			72647	7267	50937	51019	79370	79370					0.11511885193101534
SKKCGKLKAP	10	Unmodified	_SKKCGKLKAP_					0	0	0		ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	ENSG00000176887|ENST00000322002|SOX11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3007202148438	2	530.320794	1058.62703	-1.4775	-0.00078354	-2.5017	-0.0013267	-3.9792	-0.0021103	530.3192157001677	38.79	0.1387	38.625	38.554	38.693	-0.16458					5	3	2	0	0	0	0.03519	1	3226	3226		34.173	3.6689	1	124040			72648	8675	50938	51020	79371	79371					0.10006655250526819
SKKDVISQT	9	Unmodified	_SKKDVISQT_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.28594970703125	2	503.282389	1004.55022	-0.39035	-0.00019645	-0.61434	-0.00030919	-1.0047	-0.00050564	503.281936631475	63.163	0.52873	62.979	62.704	63.233	-0.18386					21	12	3	0	0	0	0.024337	1	7134	7134		33.922	1.1092	1	409370			72649	6256	50939	51021	79372	79372					0.04813135235053778
SKKGMFTDDL	10	Unmodified	_SKKGMFTDDL_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.3321533203125	2	571.281531	1140.54851	0.66963	0.00038255	-1.2186	-0.00069618	-0.549	-0.00031363	571.2806811762588	64.049	0.69227	64.095	63.794	64.486	0.045502					37	18	3	0	0	0	0.03519	1	7436	7436		61.691	0	1	614480			72650	9904	50940	51022	79373	79373					-0.01614241845209108
SKKHAEKNW	9	Unmodified	_SKKHAEKNW_					0	0	0		ENSG00000113578|ENST00000337706|FGF1;ENST00000494579.1_1_5:141974857-142077603:-|nuORF	ENSG00000113578|ENST00000337706|FGF1	ENSG00000113578|ENST00000337706|FGF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.3184814453125	2	564.301447	1126.58834	-0.80149	-0.00045228	-3.3312	-0.0018798	-4.1327	-0.0023321	564.3006095670128	61.527	0.64571	61.349	61.12	61.766	-0.17781					27	15	2	0	0	0	0.024367	1	6930	6930		44.377	6.5657	1	232470			72651	3305	50941	51023	79374	79374					0.030110659403590034
SKKKGEALF	9	Unmodified	_SKKKGEALF_					0	0	0		ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2968444824219	2	504.297842	1006.58113	-0.1409	-7.1056E-05	-0.60049	-0.00030283	-0.74139	-0.00037388	504.29746517008283	21.629	1.2364	21.438	21.128	22.364	-0.19072					59	25	5	0	0	0	0.85329	1	707	707		35.618	4.0885	1	1707700			72652	4863	50942	51024	79375	79375					0.07810333339944009
SKKKGGSYA	9	Unmodified	_SKKKGGSYA_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.27496337890625	2	463.258717	924.50288	-0.95684	-0.00044326	2.4597	0.0011395	1.5028	0.00069621	463.2596990638791	21.041	0.3967	20.828	20.574	20.971	-0.2128					12	7	2	0	0	0	0.024511	1	609	609		32.812	17.171	1	38382			72653	9189	50943	51025	79376	79376					0.037609007547075635
SKKKKKKM	8	Unmodified	_SKKKKKKM_					0	0	0			REV__CDKL5|p.R781S|1|0.33|ENSG00000008086|chrX:18619933-18619933|G/T|missense_variant	REV__CDKL5|p.R781S|1|0.33|ENSG00000008086|chrX:18619933-18619933|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7973327636719	2	503.333704	1004.65286	0.28797	0.00014495	4.3719	0.0022005	4.6599	0.0023455	503.3356279817553	19.517	0.2467	19.356	19.282	19.529	-0.16079					6	4	2	0	0	0	0.027866	1	430	430		37.159	33.475	1	13133	+		72654	19285	50944	51026	79377	79377					0.15071549492813574
SKKKKREL	8	Unmodified	_SKKKKREL_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2917175292969	2	508.832383	1015.65021	0.12014	6.1133E-05	3.4913	0.0017765	3.6115	0.0018376	508.83395438134204	53.309	0.45512	53.051	52.843	53.298	-0.25839					13	11	2	0	0	0	0.027866	1	5575	5575		34.173	6.2903	1	93876	+		72655	23463	50945	51027	79378	79378					0.1430141735951338
SKKLEKIVT	9	Unmodified	_SKKLEKIVT_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.789794921875	2	523.334424	1044.6543	-0.79037	-0.00041363	-0.26957	-0.00014107	-1.0599	-0.0005547	523.8338139721245	83.387	1.2021	83.413	83.173	84.375	0.026558					55	27	4	0	0	0	0.024484	1	10439	10439		17.468	0.99486	1	261510	+		72656	28638	50946	51028	79379	79379					0.13375462062572296
SKKLLALRE	9	Unmodified	_SKKLLALRE_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2818603515625	2	529.340041	1056.66553	0.31582	0.00016718	3.4419	0.001822	3.7577	0.0019891	529.3416669985315	83.817	0.98202	83.678	83.424	84.406	-0.1386					42	22	3	0	0	0	0.024367	1	10101	10101		44.377	0	1	325480	+		72657	28289	50947	51029	79380	79380					0.13946284156691036
SKKLNELR	8	Unmodified	_SKKLNELR_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MSMS	OPSCC_39_ClassI_Rep-1	1	494.3033752441406	2	494.300916	986.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.59	1	110.59	110.09	111.09	0								0	0	0	1.1824	1	14051	14051		11.511	2.0405	1		+		72658	27172	50948	51030	79381	79381					0.09344851571472645
SKKLRSKQLLD	11	Unmodified	_SKKLRSKQLLD_					0	0	0			REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.7523498535156	3	439.273388	1314.79833	-0.67004	-0.00029433	-3.9255	-0.0017244	-4.5955	-0.0020187	439.2716023080534	40.088	0.59827	39.938	39.591	40.189	-0.1497					26	15	2	0	0	0	0.024726	1	3418	3418		38.714	16.934	1	267460	+		72659	19440	50949	51031	79382	79382					0.15352683822720792
SKKLRSKQLLD	11	Unmodified	_SKKLRSKQLLD_					0	0	0			REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	439.273388	1314.79833	0.43182	0.00018969	-4.2467	-0.0018654	-3.8149	-0.0016758	439.27171846199604	39.925	0.55018	39.925	39.696	40.247	0	-0.07753	-0.00020422	NaN	25.892	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213690	+		72660	19440	50949	51031							0.15352683822720792
SKKLRSKQLLD	11	Unmodified	_SKKLRSKQLLD_					0	0	0			REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	REV__chr5:134206131-134225209|351|14.56|0.0|20.47|-|1|PPP2CA,PPP2CA|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	439.273388	1314.79833	0.016268	7.1459E-06	-4.2049	-0.0018471	-4.1886	-0.00184	439.2714829905046	40.147	0.48241	40.035	39.83	40.312	-0.11223	0.032161	-0.00014918	NaN	25.892	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225910	+		72661	19440	50949	51031							0.15352683822720792
SKKNFLEKL	9	Unmodified	_SKKNFLEKL_					0	0	0		ENSG00000276293|ENST00000619039|PIP4K2B;nc|ENSG00000276293|P78356-2|PIP4K2B	ENSG00000276293|ENST00000619039|PIP4K2B	ENSG00000276293|ENST00000619039|PIP4K2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8300170898438	2	553.832049	1105.64954	0.31464	0.00017426	-4.0369	-0.0022358	-3.7222	-0.0020615	553.8296747582538	87.083	2.4623	87.083	85.708	88.17	0					172	58	4	0	0	0	0.84115	1	10943	10943		36.447	3.6343	1	1317800			72662	11049	50950	51032	79383	79383					0.10094577919812764
SKKNLAVISV	10	Unmodified	_SKKNLAVISV_					0	0	0			REV__ENSG00000101440|ENST00000374954|ASIP	REV__ENSG00000101440|ENST00000374954|ASIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.2511596679688	2	529.832049	1057.64954	1.0587	0.00056093	-1.604	-0.00084983	-0.54526	-0.0002889	529.8310661177969	51.589	0.38184	51.405	51.179	51.561	-0.18404					12	9	2	0	0	0	0.03519	1	5279	5279		37.812	0.65241	1	84265	+		72663	21235	50951	51033	79384	79384					0.12302577919786017
SKKNSFLESL	10	Unmodified	_SKKNSFLESL_					0	0	0			REV__ENST00000570269.2_3_3:114047125-114047275:-|nuORF	REV__ENST00000570269.2_3_3:114047125-114047275:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8433227539062	2	576.816596	1151.61864	-0.94807	-0.00054686	4.2858	0.0024721	3.3377	0.0019252	576.8189984142999	90.192	0.44215	90.067	89.848	90.29	-0.12512					19	10	2	0	0	0	0.03519	1	11023	11023		35.152	25.969	1	163320	+		72664	35390	50952	51034	79385	79385					0.04889379814903805
SKKPRYRHRLL	11	Unmodified	_SKKPRYRHRLL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;nc|ENSG00000085224|P46100-6|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.6368713378906	3	485.300271	1452.87898	0.32494	0.00015769	3.685	0.0017883	4.01	0.001946	485.30185416645173	17.628	0.81804	17.485	17.276	18.094	-0.14278					26	16	2	0	0	0	1.0921	1	179	179		13.508	3.404	1	31258			72665	164	50953	51035	79386	79386					0.17066009656241476
SKKQTPQFF	9	Unmodified	_SKKQTPQFF_					0	0	0			REV__ENSG00000196407|ENST00000368817|THEM5	REV__ENSG00000196407|ENST00000368817|THEM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.3261108398438	2	555.800749	1109.58694	-0.077292	-4.2959E-05	-0.64788	-0.00036009	-0.72517	-0.00040305	555.8006082041368	54.813	0.28702	54.582	54.387	54.674	-0.23087					12	7	2	0	0	0	0.024511	1	5851	5851		25.574	0	1	216320	+		72666	28178	50954	51036	79387	79387					0.03653431851603273
SKKQTPQFF	9	Unmodified	_SKKQTPQFF_					0	0	0			REV__ENSG00000196407|ENST00000368817|THEM5	REV__ENSG00000196407|ENST00000368817|THEM5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.800749	1109.58694	-0.46302	-0.00025735	0.037585	2.089E-05	-0.42544	-0.00023646	555.8007628794679	54.634	0.32948	54.634	54.428	54.757	0	0.064424	9.641E-05	NaN	49.442	21	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431880	+		72667	28178	50954	51036							0.03653431851603273
SKKQTPQFF	9	Unmodified	_SKKQTPQFF_					0	0	0			REV__ENSG00000196407|ENST00000368817|THEM5	REV__ENSG00000196407|ENST00000368817|THEM5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.800749	1109.58694	-0.34395	-0.00019117	0.22801	0.00012673	-0.11595	-6.4443E-05	555.800848533142	54.752	0.33598	54.602	54.409	54.745	-0.15036	0.032394	0.00030808	NaN	49.442	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367830	+		72668	28178	50954	51036							0.03653431851603273
SKKQTPQFF	9	Unmodified	_SKKQTPQFF_					0	0	0			REV__ENSG00000196407|ENST00000368817|THEM5	REV__ENSG00000196407|ENST00000368817|THEM5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.800749	1109.58694	0.7875	0.00043769	-0.79355	-0.00044105	-0.0060473	-3.3611E-06	555.8002380748985	54.392	0.36603	54.49	54.294	54.66	0.098011	-0.079427	-0.00082748	NaN	49.442	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486760	+		72669	28178	50954	51036							0.03653431851603273
SKKRIFSTI	9	Unmodified	_SKKRIFSTI_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2911987304688	2	540.332216	1078.64988	-0.14953	-8.0794E-05	3.025	0.0016345	2.8754	0.0015537	540.3340303192911	56.229	0.38815	56.013	55.808	56.197	-0.21607					17	9	3	0	0	0	0.024447	1	6103	6103		32.812	12.816	1	172600			72670	3387	50955	51037	79388	79388					0.11369997639667417
SKKRIFSTI	9	Unmodified	_SKKRIFSTI_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.332216	1078.64988	-0.8637	-0.00046668	4.7252	0.0025532	3.8615	0.0020865	540.3346443733035	56.214	0.42744	56.057	55.748	56.176	-0.15656	0.019619	0.00039383	NaN	25.574	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128150			72671	3387	50955	51037							0.11369997639667417
SKKRIFSTI	9	Unmodified	_SKKRIFSTI_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.332216	1078.64988	-1.4683	-0.00079335	4.7717	0.0025783	3.3034	0.0017849	540.3348473117562	56.258	0.35151	56.043	55.887	56.239	-0.21551	0.005213	0.00044405	NaN	25.574	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163380			72672	3387	50955	51037							0.11369997639667417
SKKRIGWRFIR	11	Unmodified	_SKKRIGWRFIR_					0	0	0		ENSG00000176697|ENST00000356660|BDNF;nc|ENSG00000176697|P23560-2|BDNF;nc|ENSG00000176697|P23560-3|BDNF;nc|ENSG00000176697|P23560-5|BDNF;nc|ENSG00000176697|P23560-4|BDNF	ENSG00000176697|ENST00000356660|BDNF	ENSG00000176697|ENST00000356660|BDNF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.2380676269531	3	482.965	1445.87317	-0.23006	-0.00011111	3.4385	0.0016607	3.2085	0.0015496	483.30048838018183	40.544	0.3968	40.319	40.15	40.547	-0.225					14	10	2	0	0	0	0.024888	1	3531	3531		6.001	0	1	1888600			72673	8662	50956	51038	79389	79389					0.16806911144567493
SKKRLFRKFPK	11	Unmodified	_SKKRLFRKFPK_					0	0	0			REV__ENSG00000112562|ENST00000356284|SMOC2	REV__ENSG00000112562|ENST00000356284|SMOC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7740173339844	3	478.973384	1433.89832	-0.1123	-5.3788E-05	2.5633	0.0012277	2.451	0.001174	478.97449302180837	46.953	1.2121	46.759	46.238	47.45	-0.19387					76	33	4	0	0	0	0.024836	1	4501	4501		14.779	6.3715	1	458410	+		72674	22012	50957	51039	79390	79390					0.19872965947115517
SKKRLFRKFPK	11	Unmodified	_SKKRLFRKFPK_					0	0	0			REV__ENSG00000112562|ENST00000356284|SMOC2	REV__ENSG00000112562|ENST00000356284|SMOC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	478.973384	1433.89832	0.063276	3.0308E-05	2.3291	0.0011156	2.3924	0.0011459	478.9744462260044	47.235	0.87213	46.966	46.695	47.567	-0.26939	0.061906	-0.00013707	NaN	2.1239	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417240	+		72675	22012	50957	51039							0.19872965947115517
SKKSEFSLPK	10	Unmodified	_SKKSEFSLPK_					0	0	0			REV__ENSG00000101542|ENST00000262717|CDH20	REV__ENSG00000101542|ENST00000262717|CDH20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.2869873046875	2	575.826963	1149.63937	-1.3028	-0.00075017	-4.3671	-0.0025147	-5.6699	-0.0032649	575.8242180406463	47.413	0.43603	47.472	47.179	47.615	0.059097					19	12	2	0	0	0	0.03519	1	4676	4676		30.318	3.6248	1	171940	+		72676	21240	50958	51040	79391	79391					0.07053970194556314
SKKSEKSGAIT	11	Unmodified	_SKKSEKSGAIT_					0	0	0		nc|ENSG00000009780|Q8TAV0-5|FAM76A;nc|ENSG00000009780|Q8TAV0-2|FAM76A;ENSG00000009780|ENST00000373954|FAM76A;nc|ENSG00000009780|Q8TAV0-4|FAM76A;nc|ENSG00000009780|Q8TAV0-3|FAM76A	nc|ENSG00000009780|Q8TAV0-5|FAM76A	nc|ENSG00000009780|Q8TAV0-5|FAM76A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.320068359375	2	568.319502	1134.62445	1.0841	0.00061614	-0.54955	-0.00031232	0.5346	0.00030382	568.31933654529	20.261	0.92476	20.065	19.805	20.73	-0.19577					55	18	5	0	0	0	0.96926	1	519	519		43.651	1.2547	1	1731900			72677	862	50959	51041	79392	79392					0.06252478326564415
SKKSMVILT	9	Unmodified	_SKKSMVILT_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7510681152344	2	503.801903	1005.58925	-0.43315	-0.00021822	-0.84229	-0.00042435	-1.2754	-0.00064257	503.80141643501804	33.783	0.46987	33.583	33.325	33.795	-0.20019					17	11	2	0	0	0	0.024436	1	2451	2451		6.3127	0	1	327130			72678	10966	50960	51042	79393	79393					0.08668144265061528
SKKTLKGLQEA	11	Unmodified	_SKKTLKGLQEA_					0	0	0		ENSG00000178105|ENST00000322536|DDX10;ENST00000534774.1_1_11:108535817-108546498:+|nuORF;DDX10|p.V677*|1|0.3|ENSG00000178105|chr11:108838502-108838502|A/-|frameshift_variant	ENSG00000178105|ENST00000322536|DDX10	ENSG00000178105|ENST00000322536|DDX10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	601.859375	2	601.858795	1201.70304	0.087596	5.272E-05	-1.8759	-0.001129	-1.7883	-0.0010763	601.8572668891	102.45	0.5052	102.28	102.09	102.59	-0.17178					16	11	2	0	0	0	1.0465	1	12710	12710		26.063	0.48933	1	98294			72679	8793	50961	51043	79394	79394					0.11025330631673569
SKKVLPTTK	9	Unmodified	_SKKVLPTTK_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7950134277344	2	501.321317	1000.62808	-0.55028	-0.00027587	-2.18	-0.0010929	-2.7303	-0.0013688	501.8208184367038	52.38	0.15742	52.262	52.203	52.361	-0.11875					5	3	2	0	0	0	0.024541	1	5446	5446		19.997	0	1	44192			72680	732	50962	51044	79395	79395					0.12779192891059665
SKLCAVWIY	9	Unmodified	_SKLCAVWIY_					0	0	0		nc|ENSG00000102468|P28223-2|HTR2A;ENSG00000102468|ENST00000542664|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7722778320312	2	541.788795	1081.56304	-0.43398	-0.00023512	1.0555	0.00057187	0.62155	0.00033675	541.7893032549676	42.472	0.36986	42.349	42.234	42.604	-0.12299					12	9	2	0	0	0	0.024457	1	3823	3823		29.15	9.1528	1	100790			72681	18136	50963	51045	79396	79396					0.02551875093581657
SKLCILQTL	9	Unmodified	_SKLCILQTL_					0	0	0		ENST00000589461.5_1_19:37569330-37580012:+|nuORF	ENST00000589461.5_1_19:37569330-37580012:+|nuORF	ENST00000589461.5_1_19:37569330-37580012:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.8034362792969	2	509.801903	1017.58925	0.28849	0.00014708	3.1095	0.0015852	3.398	0.0017323	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.82115	1	10447	10447		37.812	0.65241	1	3441300			72682	17311	50964	51046	79397	79397					0.08116144265068215
SKLCTCTEP	9	Carbamidomethyl (C)	_SKLCTC(Carbamidomethyl (C))TEP_	SKLC(0.137)TC(0.863)TEP		SKLC(-8)TC(8)TEP		0	1	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7322387695312	2	519.73336	1037.45217	-0.069167	-3.5948E-05	-0.23855	-0.00012398	-0.30772	-0.00015993	519.7331431207076	57.168	0.97569	57.004	56.606	57.582	-0.16431					76	26	5	0	0	0	0.2101	1	6382	6382		87.696	13.441	2	5525100			72683	18157;37870	50965	51047	79398	79398	239				-0.06506132676827292
SKLDYRDIT	9	Unmodified	_SKLDYRDIT_					0	0	0		nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;ZNF638|p.P1532Yfs*16|1|0.15|ENSG00000075292|chr2:71426463-71426466|CCAT/-|frameshift_variant;nc|ENSG00000075292|Q14966-5|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	nc|ENSG00000075292|Q14966-3|ZNF638	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	556.73193359375	2	555.793121	1109.57169	-0.19317	-0.00010736	4.2876	0.002383	4.0945	0.0022757	555.795679589083	32.563	0.66035	32.326	32.086	32.746	-0.23666					22	15	2	0	0	0	0.024511	1	2225	2225		19.104	0	1	250630			72684	1552	50966	51048	79399	79399					0.02128520263727296
SKLERTCEL	9	Unmodified	_SKLERTCEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7787475585938	2	539.781699	1077.54884	-1.0037	-0.00054177	-2.4328	-0.0013132	-3.4365	-0.001855	539.7801370738586	62.216	1.1045	61.989	61.082	62.187	-0.22663					32	14	3	0	0	0	0.20652	1	7202	7202		88.177	8.6879	1	3251000			72685	5359	50967	51049	79400	79400					0.013171778746482232
SKLERTCEL	9	Unmodified	_SKLERTCEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.781699	1077.54884	-1.3562	-0.00073207	-2.2267	-0.001202	-3.583	-0.001934	539.7804663764198	61.969	0.57875	61.969	61.605	62.183	0	0.0060998	8.2154E-05	NaN	88.177	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3348500			72686	5359	50967	51049							0.013171778746482232
SKLERTCEL	9	Unmodified	_SKLERTCEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	539.781699	1077.54884	-1.4098	-0.00076101	-2.2511	-0.0012151	-3.6609	-0.0019761	539.780424508803	61.867	0.54029	61.93	61.582	62.122	0.062767	-0.032458	5.5856E-05	NaN	88.177	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3610200			72687	5359	50967	51049							0.013171778746482232
SKLFCKKI	8	Carbamidomethyl (C)	_SKLFC(Carbamidomethyl (C))KKI_	SKLFC(1)KKI		SKLFC(93)KKI		0	1	0		nc|ENSG00000162929|Q6NSI8-4|SANBR;nc|ENSG00000162929|Q6NSI8-3|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;ENSG00000162929|ENST00000402291|SANBR	nc|ENSG00000162929|Q6NSI8-4|SANBR	nc|ENSG00000162929|Q6NSI8-4|SANBR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.80322265625	2	512.304613	1022.59467	0.61682	0.000316	-0.30976	-0.00015869	0.30706	0.00015731	512.3043676374494	18.775	0.88887	18.618	18.05	18.939	-0.15637					24	17	2	0	0	0	0.027866	1	342	342		93.195	16.421	1	185380			72688	7013	50968	51050	79401	79401	86				0.0842786784752434
SKLHLTRY	8	Unmodified	_SKLHLTRY_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|70|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|70|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.78387451171875	2	509.295633	1016.57671	-0.13435	-6.8424E-05	4.0305	0.0020527	3.8962	0.0019843	509.7988225044023	49.678	0.40482	49.678	49.473	49.878	0					21	10	3	0	0	0	0.027866	1	5143	5143		31.955	0	1	202050	+		72689	36259	50969	51051	79402	79402					0.06908868917014388
SKLLKLLD	8	Unmodified	_SKLLKLLD_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7745666503906	2	465.305136	928.595718	0.043413	2.02E-05	-0.35042	-0.00016305	-0.30701	-0.00014285	465.30480619617305	51.25	0.72866	50.974	50.702	51.431	-0.27643					51	18	4	0	0	0	0.027866	1	5261	5261		30.318	0	1	1702100	+		72690	26054	50970	51052	79403	79403					0.12856405488071232
SKLLKLLD	8	Unmodified	_SKLLKLLD_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.7744445800781	2	465.305136	928.595718	0.69731	0.00032446	-0.90582	-0.00042148	-0.20851	-9.7022E-05	465.3045584214219	51.106	0.87996	50.926	50.647	51.527	-0.18071					43	22	3	0	0	0	0.027866	1	5238	5238		37.812	0	1	1537200	+		72691	26054	50970	51052	79404	79404					0.12856405488071232
SKLLMPSSH	9	Unmodified	_SKLLMPSSH_					0	0	0		ENST00000260372.7_1_15:42858988-42859072:+|nuORF	ENST00000260372.7_1_15:42858988-42859072:+|nuORF	ENST00000260372.7_1_15:42858988-42859072:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.2719421386719	2	500.268227	998.521901	-0.37619	-0.00018819	2.4715	0.0012364	2.0953	0.0010482	500.7700404947614	39.334	1.6824	39.108	38.736	40.419	-0.2257					126	44	6	0	0	0	0.80003	1	3354	3354		39.253	0	1	27495000			72692	11449	50971	51053	79405	79405					0.02258114054109228
SKLLQCSPK	9	Unmodified	_SKLLQCSPK_					0	0	0		nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14	nc|ENSG00000058091|O94921-3|CDK14	nc|ENSG00000058091|O94921-3|CDK14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2896728515625	2	502.283877	1002.5532	-0.92237	-0.00046329	-2.8869	-0.0014501	-3.8093	-0.0019134	502.28259396500755	55.337	0.48592	55.435	55.148	55.634	0.098015					25	12	3	0	0	0	0.024511	1	6060	6060		19.104	7.5925	1	299240			72693	1211	50972	51054	79406	79406					0.0520268708819458
SKLNPFPTPDN	11	Unmodified	_SKLNPFPTPDN_					0	0	0		ENST00000544249.2_1_8:146068162-146068234:+|nuORF	ENST00000544249.2_1_8:146068162-146068234:+|nuORF	ENST00000544249.2_1_8:146068162-146068234:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	614.8185424804688	2	615.311677	1228.6088	0.38314	0.00023575	0.89608	0.00055137	1.2792	0.00078712	615.3117768142589	77.445	0.49133	77.203	77.041	77.532	-0.24232					15	11	2	0	0	0	0.024749	1	9222	9222		29.551	0	1	145460			72694	16476	50973	51055	79407	79407					0.003641918095354413
SKLNPFPTPDN	11	Unmodified	_SKLNPFPTPDN_					0	0	0		ENST00000544249.2_1_8:146068162-146068234:+|nuORF	ENST00000544249.2_1_8:146068162-146068234:+|nuORF	ENST00000544249.2_1_8:146068162-146068234:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	615.311677	1228.6088	-0.63056	-0.00038799	1.7924	0.0011029	1.1618	0.00071489	615.3123162183662	77.483	0.38197	77.221	77.06	77.442	-0.26202	0.0092475	0.00062796	NaN	17.833	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172630			72695	16476	50973	51055							0.003641918095354413
SKLPARRDI	9	Unmodified	_SKLPARRDI_					0	0	0			REV__ENST00000314233.2_15:23890641-23890966:-|nuORF	REV__ENST00000314233.2_15:23890641-23890966:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2484130859375	2	528.31964	1054.62473	-0.25642	-0.00013547	-0.57309	-0.00030277	-0.82951	-0.00043824	528.3193063170637	32.641	0.56277	32.483	32.284	32.847	-0.15772					21	13	2	0	0	0	0.024447	1	2259	2259		32.812	0	1	118650	+		72696	30240	50974	51056	79408	79408					0.09959942837076596
SKLPASEPARS	11	Unmodified	_SKLPASEPARS_					0	0	0			REV__ENST00000530945.1_1_11:65623104-65623215:-|nuORF	REV__ENST00000530945.1_1_11:65623104-65623215:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.3052368164062	2	571.811845	1141.60914	0.049441	2.8271E-05	0.17889	0.00010229	0.22833	0.00013056	571.8116146886036	70.721	0.97872	70.464	70.348	71.327	-0.25713					38	24	2	0	0	0	0.024355	1	8275	8275		72.879	28.502	1	1373200	+		72697	34547	50975	51057	79409	79409					0.04399611529356662
SKLQFILA	8	Unmodified	_SKLQFILA_					0	0	0		nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-2|DCTN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	460.2838134765625	2	460.284203	918.553853	-1.1723	-0.0005396	0.85279	0.00039253	-0.31952	-0.00014707	460.284367401358	65.538	1.8501	65.325	64.528	66.378	-0.21328					119	45	4	0	0	0	0.91956	1	7487	7487		49.442	0	1	2954800			72698	5089	50976	51058	79410	79410					0.09131849799564407
SKLQVKLEP	9	Unmodified	_SKLQVKLEP_					0	0	0		ENST00000493398.5_1_2:241513975-241514670:+|nuORF;ENST00000481757.5_1_2:241513732-241514263:+|nuORF;ENSG00000142327|ENST00000270357|RNPEPL1	ENST00000493398.5_1_2:241513975-241514670:+|nuORF	ENST00000493398.5_1_2:241513975-241514670:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.319091796875	2	521.318774	1040.623	-0.37117	-0.0001935	-0.2693	-0.00014039	-0.64048	-0.00033389	521.3185610189183	85.74	1.2724	85.683	85.355	86.628	-0.057617					75	29	4	0	0	0	0.247	1	10733	10733		82.75	0	1	1536100			72699	5553	50977	51059	79411	79411					0.10430889028452839
SKLRKLEAS	9	Unmodified	_SKLRKLEAS_					0	0	0		CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant;ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.3141479492188	2	516.314023	1030.61349	-0.26252	-0.00013554	-0.2214	-0.00011431	-0.48392	-0.00024986	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	0.91321	1	12494	12494		31.53	1.0262	1	33267000			72700	206	50978	51060	79412	79412					0.09941120742928433
SKLRKLEAS	9	Unmodified	_SKLRKLEAS_					0	0	0		CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant;ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.3138427734375	2	516.314023	1030.61349	0.22709	0.00011725	-0.71687	-0.00037013	-0.48978	-0.00025288	516.313585376337	97.954	2.7122	97.952	97.189	99.901	-0.0020828					210	62	6	0	0	0	0.84115	1	12423	12423		36.447	0.82846	1	31857000			72701	206	50978	51060	79413	79413					0.09941120742928433
SKLRKLEAS	9	Unmodified	_SKLRKLEAS_					0	0	0		CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant;ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	CACTIN|p.Y411Qfs*44|1|0.19|ENSG00000105298|chr19:3614520-3614521|TA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.313720703125	2	516.314023	1030.61349	-0.060536	-3.1256E-05	-1.0547	-0.00054456	-1.1152	-0.00057582	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	0.87448	1	12102	12102		34.173	2.2177	1	29455000			72702	206	50978	51060	79414	79414					0.09941120742928433
SKLRKPLPEG	10	Unmodified	_SKLRKPLPEG_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.732421875	2	562.842948	1123.67134	-1.3187	-0.00074221	3.2053	0.0018041	1.8866	0.0010619	562.8441476080166	51.725	0.33899	51.456	51.281	51.62	-0.26903					14	8	2	0	0	0	0.03519	1	5322	5322		22.58	1.6327	1	167640	+		72703	26618	50979	51061	79415	79415					0.11445382668352977
SKLRLRRRNN	10	Unmodified	_SKLRLRRRNN_					0	0	0			REV__ENSG00000163689|ENST00000482387|CFAP20DC	REV__ENSG00000163689|ENST00000482387|CFAP20DC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.27197265625	3	438.272604	1311.79598	0.61765	0.0002707	0.86024	0.00037702	1.4779	0.00064772	438.27302580113854	105.33	0.63876	105.33	105.12	105.76	0					38	15	3	0	0	0	1.1244	1	13521	13521		23.378	0.81632	1	662350	+		72704	25618	50980	51062	79416	79416					0.1525569292828095
SKLRRKLNEVQ	11	Unmodified	_SKLRRKLNEVQ_					0	0	0		ENST00000326105.6_1_1:175013764-175014370:-|nuORF;nc|ENSG00000165689|Q96C92-4|ENTR1;nc|ENSG00000165689|Q96C92-3|ENTR1;CAMSAP1-SDCCAG3|1|fusion;nc|ENSG00000165689|Q96C92-2|ENTR1;ENSG00000165689|ENST00000357365|ENTR1;NOTCH1-SDCCAG3|1|fusion	ENST00000326105.6_1_1:175013764-175014370:-|nuORF	ENST00000326105.6_1_1:175013764-175014370:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7427978515625	3	457.612404	1369.81538	0.019298	8.8308E-06	0.15758	7.2109E-05	0.17687	8.094E-05	457.94689390642975	45.676	0.31296	45.579	45.393	45.706	-0.096649					17	8	3	0	0	0	0.024797	1	4370	4370		10.998	4.9972	1	185340			72705	209	50981	51063	79417	79417					0.14526604428510836
SKLSEKALL	9	Unmodified	_SKLSEKALL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.25042724609375	2	494.8055	987.596446	0.44603	0.0002207	-3.3584	-0.0016617	-2.9123	-0.001441	494.80072071022613	68.393	0.60238	68.15	67.828	68.43	-0.24278					31	14	4	0	0	0	0.024447	1	7948	7948		25.574	0	1	340190	+		72706	29089	50982	51064	79418	79418					0.10215200137145075
SKLSSKSA	8	Unmodified	_SKLSSKSA_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN3A|p.K585Efs*6|1|0.12|ENSG00000153253|chr2:165140917-165140918|-/C|frameshift_variant;SCN9A|p.R476K|1|0.46|ENSG00000169432|chr2:166286511-166286511|C/T|missense_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.2330017089844	2	404.232168	806.449782	1.1468	0.00046357	0.26379	0.00010663	1.4106	0.0005702	404.23205253167436	84.32	2.7374	84.32	83.562	86.3	0					145	64	4	0	0	0	1.0574	1	10550	10550		27.882	0	1	14422000			72707	7940;6337;18631	50983	51065	79419	79419					0.038815229720512434
SKLSSKSA	8	Unmodified	_SKLSSKSA_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN3A|p.K585Efs*6|1|0.12|ENSG00000153253|chr2:165140917-165140918|-/C|frameshift_variant;SCN9A|p.R476K|1|0.46|ENSG00000169432|chr2:166286511-166286511|C/T|missense_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.2330017089844	2	404.232168	806.449782	1.5545	0.00062839	-0.33094	-0.00013378	1.2236	0.00049461	404.2317363749905	84.372	3.2452	84.398	82.917	86.162	0.026558					196	76	5	0	0	0	1.0574	1	10474	10474		25.574	0	1	13913000			72708	7940;6337;18631	50983	51065	79420	79420					0.038815229720512434
SKLSSKSA	8	Unmodified	_SKLSSKSA_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN3A|p.K585Efs*6|1|0.12|ENSG00000153253|chr2:165140917-165140918|-/C|frameshift_variant;SCN9A|p.R476K|1|0.46|ENSG00000169432|chr2:166286511-166286511|C/T|missense_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.232666015625	2	404.232168	806.449782	1.0198	0.00041225	0.22084	8.9269E-05	1.2407	0.00050152	404.2320221194493	84.559	4.1783	84.356	82.19	86.368	-0.20329					189	97	3	0	0	0	1.0284	3	10201	10201;10213;10295		32.812	4.9302	1	18249000			72709	7940;6337;18631	50983	51065	79421;79422;79423	79421					0.038815229720512434
SKLSSKSA	8	Unmodified	_SKLSSKSA_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN3A|p.K585Efs*6|1|0.12|ENSG00000153253|chr2:165140917-165140918|-/C|frameshift_variant;SCN9A|p.R476K|1|0.46|ENSG00000169432|chr2:166286511-166286511|C/T|missense_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.2326354980469	2	404.232168	806.449782	1.0121	0.00040911	-0.92001	-0.0003719	0.092071	3.7218E-05	404.23139167618297	81.763	1.0642	81.57	81.254	82.318	-0.19334					55	24	3	0	0	0	1.0574	1	9845	9845		23.523	0	1	962360			72710	7940;6337;18631	50983	51065	79424	79424					0.038815229720512434
SKLSSKSA	8	Unmodified	_SKLSSKSA_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN3A|p.K585Efs*6|1|0.12|ENSG00000153253|chr2:165140917-165140918|-/C|frameshift_variant;SCN9A|p.R476K|1|0.46|ENSG00000169432|chr2:166286511-166286511|C/T|missense_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.23199462890625	2	404.232168	806.449782	-0.17582	-7.1072E-05	-2.4983	-0.0010099	-2.6741	-0.001081	404.230579052596	87.234	1.7473	87.096	86.443	88.19	-0.13734					94	41	3	0	0	0	1.0574	1	10600	10600		27.882	0	1	798590			72711	7940;6337;18631	50983	51065	79425	79425					0.038815229720512434
SKLTKNKCL	9	Unmodified	_SKLTKNKCL_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2745361328125	2	517.804977	1033.5954	-1.0511	-0.00054425	3.9447	0.0020426	2.8936	0.0014983	517.8069358727194	44.924	0.8592	44.776	44.322	45.181	-0.1488					50	24	3	0	0	0	0.0242	1	4354	4354		69.628	0	1	1335500	+		72712	27290	50984	51066	79426	79426					0.07994662496571436
SKLTSSRLDA	10	Unmodified	_SKLTSSRLDA_					0	0	0		ENSG00000232399|ENST00000429667|USP17L13;ENSG00000226430|ENST00000530447|USP17L7	ENSG00000232399|ENST00000429667|USP17L13	ENSG00000232399|ENST00000429667|USP17L13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.79638671875	2	539.29857	1076.58259	-0.50889	-0.00027444	-2.5425	-0.0013712	-3.0514	-0.0016456	539.2969858809365	65.778	1.0211	65.536	65.126	66.148	-0.24145					65	24	4	0	0	0	0.98527	1	7496	7496		47.96	0.043923	1	2687200			72713	10662	50985	51067	79427	79427					0.047359226380422115
SKLTVHQI	8	Unmodified	_SKLTVHQI_					0	0	0			REV__ENST00000358410.7_1_10:70209954-70218888:-|nuORF	REV__ENST00000358410.7_1_10:70209954-70218888:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.26123046875	2	463.276909	924.539266	0.27493	0.00012737	-0.5678	-0.00026305	-0.29287	-0.00013568	463.27661215702	59.522	0.95211	59.273	58.847	59.8	-0.24842					50	23	3	0	0	0	0.027866	1	6638	6638		38.806	9.6566	1	980880	+		72714	30858	50986	51068	79428	79428					0.07397777651419801
SKLYIKFWVV	10	Unmodified	_SKLYIKFWVV_					0	0	0			REV__ENST00000480884.5_1_3:56649942-56650128:+|nuORF	REV__ENST00000480884.5_1_3:56649942-56650128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.882568359375	2	641.881542	1281.74853	-0.70618	-0.00045328	2.0202	0.0012967	1.314	0.00084342	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.1088	1	12025	12025		31.53	2.3598	1	3453200	+		72715	33435	50987	51069	79429	79429					0.1189260088467563
SKLYKMKIR	9	Unmodified	_SKLYKMKIR_					0	0	0			REV__ENSG00000138622|ENST00000261917|HCN4	REV__ENSG00000138622|ENST00000261917|HCN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.859375	2	583.857544	1165.70053	0.21983	0.00012835	2.1645	0.0012637	2.3843	0.0013921	583.8586504901666	97.148	1.1572	97.024	96.617	97.774	-0.12368					90	25	5	0	0	0	0.96906	1	11995	11995		26.693	4.733	1	1344500	+		72716	23869	50988	51070	79430	79430					0.12431203692995041
SKLYSLLFRR	10	Unmodified	_SKLYSLLFRR_					0	0	0		nc|ENSG00000184076|Q9UDW1-2|UQCR10;ENSG00000184076|ENST00000330029|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.88232421875	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.118	1	11914	11914		30.318	6.795	1	3558500			72717	9304	50989	51071	79431	79431					0.12613333485114708
SKMEESKALD	10	Unmodified	_SKMEESKALD_					0	0	0		nc|ENSG00000130783|Q6P9F0-3|CCDC62;nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	nc|ENSG00000130783|Q6P9F0-3|CCDC62	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2776489257812	2	569.276446	1136.53834	0.59111	0.0003365	0.028863	1.6431E-05	0.61997	0.00035293	569.2763162511985	79.856	1.0427	79.609	79.195	80.238	-0.2465					69	24	4	0	0	0	0.98527	1	9561	9561		47.96	0.30219	1	1575800			72718	4459	50990	51072	79432	79432					-0.024468495704468296
SKMHDLRQS	9	Unmodified	_SKMHDLRQS_					0	0	0			REV__nc|ENSG00000135903|P23760|PAX3	REV__nc|ENSG00000135903|P23760|PAX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.3071899414062	2	551.277115	1100.53968	-0.24384	-0.00013442	-1.7369	-0.00095751	-1.9807	-0.0010919	551.275741920199	64.424	0.70611	64.424	64.203	64.909	0					25	18	2	0	0	0	0.024527	1	7592	7592		12.812	0	1	143110	+		72719	23591	50991	51073	79433	79433					-0.006571706910335706
SKMLTAIKP	9	Unmodified	_SKMLTAIKP_					0	0	0			REV__nc|ENSG00000084734|Q14397|GCKR	REV__nc|ENSG00000084734|Q14397|GCKR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.30810546875	2	494.79662	987.578688	0.032819	1.6239E-05	-2.2264	-0.0011016	-2.1936	-0.0010854	494.7953364969804	68.896	0.74577	68.911	68.388	69.133	0.015121					29	19	2	0	0	0	0.024457	1	8161	8161		10.265	0	1	164150	+		72720	20741	50992	51074	79434	79434					0.0844016161061063
SKMSSRAL	8	Unmodified	_SKMSSRAL_					0	0	0			REV__CMIP|p.L731R|1|0.56|ENSG00000153815|chr16:81705599-81705599|T/G|missense_variant	REV__CMIP|p.L731R|1|0.56|ENSG00000153815|chr16:81705599-81705599|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.24212646484375	2	440.23947	878.464386	-0.31933	-0.00014058	-3.1723	-0.0013966	-3.4916	-0.0015372	440.23801544449753	44.824	0.66017	44.613	44.362	45.022	-0.21109					37	16	3	0	0	0	0.027866	1	4198	4198		26.796	14.589	1	615830	+		72721	19503	50993	51075	79435	79435					0.02029271848539338
SKMTQMLEL	9	Unmodified	_SKMTQMLEL_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|21|3|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|21|3|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|21|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.3090209960938	2	540.775028	1079.5355	-0.083555	-4.5185E-05	-0.73094	-0.00039527	-0.8145	-0.00044046	540.7747394103518	72.257	0.31863	72.257	72.054	72.373	0					10	7	2	0	0	0	0.024541	1	8800	8800		19.997	0.89325	1	104760			72722	17823	50994	51076	79436	79436					-0.0010839622896128276
SKNFLLWP	8	Unmodified	_SKNFLLWP_					0	0	0		ENST00000457665.5_1_22:38746838-38794807:-|nuORF	ENST00000457665.5_1_22:38746838-38794807:-|nuORF	ENST00000457665.5_1_22:38746838-38794807:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.75140380859375	2	502.781828	1003.5491	-1.5353	-0.00077194	1.5495	0.00077905	0.014136	7.1072E-06	502.7825473973374	33.741	0.38984	33.565	33.352	33.742	-0.17557					12	9	2	0	0	0	0.027866	1	2421	2421		33.516	4.366	1	155610			72723	14614	50995	51077	79437	79437					0.047469656568068785
SKNGRSLPV	9	Unmodified	_SKNGRSLPV_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|40|3|anti-sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|40|3|anti-sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|40|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27740478515625	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.82115	1	10281	10281		37.812	1.3648	1	7407200			72724	17827	50996	51078	79438	79438					0.060319920203255606
SKNKLSPSL	9	Unmodified	_SKNKLSPSL_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.75677490234375	2	487.287474	972.560395	0.092343	4.4998E-05	-0.012498	-6.09E-06	0.079846	3.8908E-05	487.2874050640816	37.216	0.49732	37.023	36.812	37.309	-0.193					27	12	3	0	0	0	0.024539	1	3007	3007		20.947	0	1	1255000	+		72725	21663	50997	51079	79439	79439					0.07301742960294177
SKNLLGSRDL	10	Unmodified	_SKNLLGSRDL_					0	0	0		ENST00000571644.1_1_16:31374636-31388147:+|nuORF;ENSG00000140678|ENST00000268296|ITGAX	ENST00000571644.1_1_16:31374636-31388147:+|nuORF	ENST00000571644.1_1_16:31374636-31388147:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.3147583007812	2	551.814387	1101.61422	0.2245	0.00012388	4.3792	0.0024165	4.6037	0.0025404	551.8167421581782	33.251	1.0939	33.308	32.877	33.971	0.056568					68	28	4	0	0	0	0.03519	1	2359	2359		51.193	0	1	2062000			72726	17042	50998	51080	79440	79440					0.06747915391997594
SKNLLRMK	8	Unmodified	_SKNLLRMK_					0	0	0		ENST00000563504.5_1_16:82203717-82203780:-|nuORF;ENST00000567729.1_1_16:82198527-82203780:-|nuORF;ENST00000563100.5_1_16:82198328-82203780:-|nuORF;ENST00000566748.1_1_16:82197734-82203804:-|nuORF;ENSG00000135698|ENST00000258169|MPHOSPH6	ENST00000563504.5_1_16:82203717-82203780:-|nuORF	ENST00000563504.5_1_16:82203717-82203780:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.3233947753906	2	495.299862	988.58517	0.89409	0.00044284	3.4846	0.0017259	4.3787	0.0021688	495.3020848884152	64.193	0.4027	64.239	64.046	64.448	0.045502					22	10	3	0	0	0	0.027866	1	7487	7487		27.882	14.428	1	215370			72727	4924	50999	51081	79441	79441					0.09042099562009298
SKNLSESP	8	Unmodified	_SKNLSESP_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2356872558594	2	431.219257	860.423961	-0.77267	-0.00033319	3.9943	0.0017224	3.2217	0.0013892	431.2210387115634	25.441	0.39734	25.407	25.201	25.598	-0.034395					15	9	2	0	0	0	0.027866	1	1178	1178		21.96	12.254	1	28663			72728	8178	51000	51082	79442	79442					-0.011833712702355115
SKNMTKKAV	9	Unmodified	_SKNMTKKAV_					0	0	0			REV__ENST00000496467.5_1_9:102861593-102977700:+|nuORF	REV__ENST00000496467.5_1_9:102861593-102977700:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7510681152344	2	503.789327	1005.5641	-0.41689	-0.00021003	-2.2864	-0.0011518	-2.7032	-0.0013619	503.7888692282084	33.834	0.24	33.634	33.555	33.795	-0.20019					6	5	2	0	0	0	0.024405	1	2451	2451		14.865	0	1	29529	+		72729	33046	51001	51083	79443	79443					0.0615408946248408
SKNPKIALK	9	Unmodified	_SKNPKIALK_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7686767578125	2	499.821484	997.628415	-0.36582	-0.00018285	-0.077531	-3.8752E-05	-0.44335	-0.0002216	499.8214554761365	39.278	0.47793	39.052	38.839	39.317	-0.2257					19	12	2	0	0	0	0.024319	1	3285	3285		39.253	12.457	1	239000			72730	5532	51002	51084	79444	79444					0.1295061261093906
SKNWIQVKW	9	Unmodified	_SKNWIQVKW_					0	0	0			REV__ENST00000589218.5_1_19:37813113-37814458:+|nuORF	REV__ENST00000589218.5_1_19:37813113-37814458:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.8302612304688	2	594.82984	1187.64513	-0.809	-0.00048122	0.78306	0.00046579	-0.025942	-1.5431E-05	594.8301446083168	73.076	0.84917	72.881	72.543	73.392	-0.19424					54	20	4	0	0	0	0.33245	1	8563	8563		71.296	2.6699	1	1965600	+		72731	35671	51003	51085	79445	79445					0.058811134968891565
SKNWIQVKW	9	Unmodified	_SKNWIQVKW_					0	0	0			REV__ENST00000589218.5_1_19:37813113-37814458:+|nuORF	REV__ENST00000589218.5_1_19:37813113-37814458:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	594.82984	1187.64513	-0.74958	-0.00044587	0.7542	0.00044862	0.004622	2.7493E-06	594.8302044744365	73.308	0.68675	73.031	72.756	73.443	-0.2769	0.040118	-0.00012489	NaN	71.296	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1569300	+		72732	35671	51003	51085							0.058811134968891565
SKNWIQVKW	9	Unmodified	_SKNWIQVKW_					0	0	0			REV__ENST00000589218.5_1_19:37813113-37814458:+|nuORF	REV__ENST00000589218.5_1_19:37813113-37814458:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	594.82984	1187.64513	-0.809	-0.00048122	0.78306	0.00046579	-0.025942	-1.5431E-05	594.8301446083168	73.076	0.84917	72.881	72.543	73.392	-0.19424	-0.10964	-9.0555E-05	NaN	71.296	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1965600	+		72733	35671	51003	51085							0.058811134968891565
SKPAQVNLIN	10	Unmodified	_SKPAQVNLIN_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7722778320312	2	542.31148	1082.60841	-0.40972	-0.00022219	-2.7139	-0.0014718	-3.1237	-0.001694	542.8107193638277	42.588	0.36986	42.465	42.234	42.604	-0.12299					23	9	4	0	0	0	0.03519	1	3823	3823		19.997	4.355	1	192710			72734	11057	51004	51086	79446	79446					0.07040816880339662
SKPDTTKYV	9	Unmodified	_SKPDTTKYV_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7435913085938	2	519.776939	1037.53933	-0.92665	-0.00048165	-2.809	-0.0014601	-3.7357	-0.0019417	519.7780388034731	38.202	0.80054	38.023	37.739	38.539	-0.17929					70	22	5	0	0	0	0.024374	1	3090	3090		49.442	11.63	1	2335200	+		72735	22280	51005	51087	79447	79447					0.022057328607388627
SKPIKFEL	8	Unmodified	_SKPIKFEL_					0	0	0		nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2	nc|ENSG00000118523|P29279-2|CCN2	nc|ENSG00000118523|P29279-2|CCN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7687072753906	2	481.289485	960.564418	-0.82432	-0.00039673	2.4808	0.001194	1.6564	0.00079723	481.2914569839648	44.533	0.14151	44.316	44.215	44.357	-0.21654					5	3	2	0	0	0	0.027866	1	4144	4144		29.15	0	1	41748			72736	3691	51006	51088	79448	79448					0.08255832453994572
SKPIKFLVS	9	Unmodified	_SKPIKFLVS_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.784423828125	2	509.81841	1017.62227	-0.13534	-6.8999E-05	-0.85385	-0.00043531	-0.98919	-0.00050431	509.8177290750941	47.33	0.45125	47.233	46.934	47.385	-0.096649					25	11	3	0	0	0	0.024477	1	4606	4606		9.7057	0	1	316150			72737	8234	51007	51089	79449	79449					0.11416094379410424
SKPIKFLVS	9	Unmodified	_SKPIKFLVS_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.81841	1017.62227	-0.96292	-0.00049092	0.35351	0.00018023	-0.60941	-0.00031069	509.81823147305084	47.329	0.34597	47.388	47.144	47.489	0.059097	0.096802	0.00099426	NaN	5.5578	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78879			72738	8234	51007	51089							0.11416094379410424
SKPIRRKFRPE	11	Unmodified	_SKPIRRKFRPE_					0	0	0		ENSG00000169891|ENST00000357277|REPS2;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENST00000469714.1_1_X:17092694-17165601:+|nuORF	ENSG00000169891|ENST00000357277|REPS2	ENSG00000169891|ENST00000357277|REPS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.9515075683594	3	471.95276	1412.83645	0.17943	8.4684E-05	-2.5652	-0.0012106	-2.3858	-0.001126	471.95164307474545	104.46	0.54167	104.3	104.05	104.59	-0.16791					45	14	4	0	0	0	1.0996	1	12978	12978		11.455	0.35785	1	303920			72739	7984	51008	51090	79450	79450					0.14654614528012644
SKPLDPYTP	9	Unmodified	_SKPLDPYTP_					0	0	0			REV__ENST00000308302.3_1_1:204167444-204167576:-|nuORF	REV__ENST00000308302.3_1_1:204167444-204167576:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2843017578125	2	509.266207	1016.51786	-0.72488	-0.00036916	-2.5479	-0.0012976	-3.2728	-0.0016667	509.76600325522384	46.494	0.35958	46.294	46.083	46.443	-0.20021					24	9	4	0	0	0	0.024374	1	4498	4498		40.778	10.46	1	722670	+		72740	30150	51009	51091	79451	79451					0.010263478320553077
SKPLNIQVQ	9	Unmodified	_SKPLNIQVQ_					0	0	0		nc|ENSG00000160856|Q96P31-5|FCRL3;ENST00000494724.5_1_1:157667081-157670285:-|nuORF;ENST00000478179.1_1_1:157666980-157667704:-|nuORF;nc|ENSG00000160856|Q96P31-4|FCRL3;ENST00000480682.5_1_1:157667440-157670285:-|nuORF;nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-2|FCRL3;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3	nc|ENSG00000160856|Q96P31-5|FCRL3;nc|ENSG00000160856|Q96P31-3|FCRL3	nc|ENSG00000160856|Q96P31-3|FCRL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7930297851562	2	513.800749	1025.58694	0.27524	0.00014142	3.5431	0.0018205	3.8184	0.0019619	513.8023933361391	71.723	0.63614	71.517	71.225	71.861	-0.20613					27	15	2	0	0	0	0.024209	1	8404	8404		47.657	6.8792	1	243380			72741	18429;15536	51010	51092	79452	79452					0.07517431851601941
SKPLTTNTN	9	Unmodified	_SKPLTTNTN_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2998352050781	2	488.258914	974.503274	0.12171	5.9427E-05	-1.4837	-0.00072441	-1.362	-0.00066498	488.2582721781583	68.506	0.88628	68.213	67.974	68.86	-0.29267					53	22	3	0	0	0	0.024438	1	8267	8267		29.17	6.5904	1	818200	+		72742	24088	51011	51093	79453	79453					0.015002756839066933
SKPLTTNTN	9	Unmodified	_SKPLTTNTN_					0	0	0			REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	REV__nc|ENSG00000141446|Q5FWF5-2|ESCO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	488.258914	974.503274	0.00019028	9.2905E-08	-5.4274	-0.00265	-5.4272	-0.0026499	488.2561288515941	68.233	0.45966	68.252	67.967	68.427	0.018921	0.049526	-0.00075224	NaN	41.427	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	808540	+		72743	24088	51011	51093							0.015002756839066933
SKPPRPVP	8	Unmodified	_SKPPRPVP_					0	0	0		ENST00000444348.1_1_1:36035435-36040229:-|nuORF	ENST00000444348.1_1_1:36035435-36040229:-|nuORF	ENST00000444348.1_1_1:36035435-36040229:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2668151855469	2	439.266345	876.518136	0.40112	0.0001762	-0.15652	-6.8755E-05	0.2446	0.00010744	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	1.0106	1	3986	3986		35.618	3.6634	1	3207400			72744	14418	51012	51094	79454	79454					0.07493812342568162
SKPRPFAGGGY	11	Unmodified	_SKPRPFAGGGY_					0	0	0		ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;nc|ENSG00000088833|Q9UNZ2-6|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	ENSG00000088833|ENST00000216879|NSFL1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.828369140625	2	568.795998	1135.57744	0.13943	7.9308E-05	-3.5357	-0.0020111	-3.3963	-0.0019318	568.7928144589922	50.019	0.74712	49.74	49.584	50.332	-0.27977					30	19	2	0	0	0	0.024738	1	5119	5119		14.137	4.4315	1	387720			72745	1879	51013	51095	79455	79455					0.015076635661216642
SKPRSQTEP	9	Unmodified	_SKPRSQTEP_					0	0	0			REV__ENST00000265563.12_1_3:48885148-48885193:-|nuORF	REV__ENST00000265563.12_1_3:48885148-48885193:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.3228759765625	2	515.269813	1028.52507	0.7055	0.00036352	-1.5053	-0.00077565	-0.79982	-0.00041212	515.2697646324286	73.877	0.97755	73.877	73.362	74.34	0					47	23	3	0	0	0	0.024447	1	9025	9025		25.574	0	1	2307300	+		72746	29740	51014	51096	79456	79456					0.011950804324897035
SKPRTNRFVK	10	Unmodified	_SKPRTNRFVK_					0	0	0		TBC1D20|p.T360S|1|0.28|ENSG00000125875|chr20:438720-438720|T/A|missense_variant	TBC1D20|p.T360S|1|0.28|ENSG00000125875|chr20:438720-438720|T/A|missense_variant	TBC1D20|p.T360S|1|0.28|ENSG00000125875|chr20:438720-438720|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.56317138671875	3	411.578923	1231.71494	0.041311	1.7003E-05	3.6271	0.0014929	3.6685	0.0015099	411.5803379313149	32.515	0.49655	32.278	32.042	32.539	-0.23666					21	11	3	0	0	0	0.03519	1	2278	2278		17.833	2.4957	1	226420			72747	38058	51015	51097	79457	79457					0.10834992165518997
SKPTKPSVPPL	11	Unmodified	_SKPTKPSVPPL_					0	0	0		nc|ENSG00000257923|P39880-4|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1	nc|ENSG00000257923|P39880-4|CUX1	nc|ENSG00000257923|P39880-4|CUX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8438110351562	2	575.845156	1149.67576	-0.10957	-6.3095E-05	-3.6823	-0.0021204	-3.7919	-0.0021835	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.0344	1	11660	11660		29.17	0.020503	1	4935500			72748	10924	51016	51098	79458	79458					0.10690847091291289
SKPTPGTK	8	Unmodified	_SKPTPGTK_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1829528808594	2	408.23471	814.454868	1.0857	0.00044323	-1.6894	-0.00068967	-0.60366	-0.00024644	408.2342714143872	25.119	0.38806	24.947	24.688	25.076	-0.17151					18	8	3	0	0	0	0.027866	1	1125	1125		40.778	11.629	1	64889			72749	18650	51017	51099	79459	79459					0.040218268346734476
SKPWTLSH	8	Unmodified	_SKPWTLSH_					0	0	0			REV__ENST00000510164.5_1_5:175775015-175775063:-|nuORF	REV__ENST00000510164.5_1_5:175775015-175775063:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.29248046875	2	478.253434	954.492316	0.71854	0.00034364	2.5894	0.0012384	3.3079	0.001582	478.25447565256025	46.948	0.45289	46.948	46.623	47.076	0					16	11	2	0	0	0	0.027866	1	4664	4664		21.96	0	1	196940	+		72750	34100	51018	51100	79460	79460					0.01324918100283412
SKQFHHQL	8	Unmodified	_SKQFHHQL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7698364257812	2	512.769783	1023.52501	-0.70517	-0.00036159	0.43385	0.00022247	-0.27132	-0.00013913	512.7699420023974	26.056	0.42738	25.82	25.55	25.977	-0.23603					25	10	3	0	0	0	0.35998	1	1304	1304		102.77	8.7669	1	725010			72751	9307	51019	51101	79461	79461					0.014191252231285034
SKQFHHQL	8	Unmodified	_SKQFHHQL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.76953125	2	512.769783	1023.52501	-1.081	-0.0005543	0.6245	0.00032022	-0.45649	-0.00023408	512.7700386622049	25.9	0.4653	25.737	25.457	25.922	-0.16331					27	11	4	0	0	0	0.38451	1	1242	1242		99.375	14.459	1	1113300			72752	9307	51019	51101	79462	79462					0.014191252231285034
SKQFHHQL	8	Unmodified	_SKQFHHQL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.769783	1023.52501	-0.29496	-0.00015125	0.15222	7.8056E-05	-0.14274	-7.3192E-05	512.7697986376922	25.813	0.42386	25.642	25.413	25.837	-0.17078	-0.091	-0.00033323	NaN	102.77	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931150			72753	9307	51019	51101							0.014191252231285034
SKQFLQGT	8	Unmodified	_SKQFLQGT_					0	0	0			REV__ENSG00000118308|ENST00000556887|IRAG2	REV__ENSG00000118308|ENST00000556887|IRAG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.7448425292969	2	454.745442	907.476331	0.21748	9.8897E-05	-1.5936	-0.00072467	-1.3761	-0.00062577	454.7446096091311	101.75	1.4478	101.58	101.05	102.5	-0.17178					89	33	4	0	0	0	1.0574	1	12657	12657		27.882	2.3082	1	2298900	+		72754	22398	51020	51102	79463	79463					0.018892118633857535
SKQHGSVIV	9	Unmodified	_SKQHGSVIV_					0	0	0			REV__ENST00000467496.5_1_X:129474252-129484631:+|nuORF	REV__ENST00000467496.5_1_X:129474252-129484631:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.2925109863281	2	477.771991	953.529429	0.77435	0.00036996	0.13705	6.5481E-05	0.91141	0.00043545	477.7715994569409	46.344	0.60736	46.344	46.126	46.733	0					23	16	2	0	0	0	0.024506	1	4629	4629		16.473	0.83134	1	239830	+		72755	21285	51021	51103	79464	79464					0.0508058964603606
SKQIIRFWQ	9	Unmodified	_SKQIIRFWQ_					0	0	0		ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000466609.1_1_3:98378565-98379411:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.213623046875	3	402.564502	1204.67168	0.44888	0.0001807	0.18336	7.3815E-05	0.63224	0.00025452	402.5645072307397	56.607	1.4396	56.44	55.596	57.036	-0.1672					63	37	3	0	0	0	0.024323	1	6146	6146		28.081	0	1	1415900			72756	14816	51022	51104	79465	79465					0.07752802388222335
SKQIIRFWQ	9	Unmodified	_SKQIIRFWQ_					0	0	0		ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000466609.1_1_3:98378565-98379411:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.21282958984375	3	402.564502	1204.67168	1.2368	0.0004979	-0.68818	-0.00027704	0.54863	0.00022086	402.5641497032725	56.625	0.91383	56.423	56.012	56.926	-0.20208					57	23	4	0	0	0	0.024427	1	6162	6162		27.047	0	1	1534800			72757	14816	51022	51104	79466	79466					0.07752802388222335
SKQIQKLPE	9	Unmodified	_SKQIQKLPE_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|51|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|51|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|51|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2955322265625	2	535.813856	1069.61316	-0.51942	-0.00027831	1.3614	0.00072944	0.84194	0.00045112	536.3152392730004	75.107	1.1234	74.863	74.424	75.547	-0.24455					68	28	3	0	0	0	0.023842	1	9130	9130		67.494	14.557	1	374220			72758	17867	51023	51105	79467	79467					0.08113701023080466
SKQKFLLVS	9	Unmodified	_SKQKFLLVS_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2371826171875	2	525.321317	1048.62808	-0.73153	-0.00038429	-0.25553	-0.00013423	-0.98706	-0.00051852	525.3208408830774	44.831	0.39146	44.62	44.362	44.754	-0.21109					13	9	2	0	0	0	0.024466	1	4163	4163		39.253	0	1	105550	+		72759	26187	51024	51106	79468	79468					0.10571192891075043
SKQKNKAGGI	10	Unmodified	_SKQKNKAGGI_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2803955078125	2	515.803823	1029.59309	-0.57965	-0.00029898	4.3511	0.0022443	3.7715	0.0019453	515.8058846880897	54.84	0.56262	54.694	54.459	55.022	-0.14609					35	14	3	0	0	0	0.03519	1	5893	5893		37.812	0	1	777060			72760	17871	51025	51107	79469	79469					0.07947950083121214
SKQKNKAGGI	10	Unmodified	_SKQKNKAGGI_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|123|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2793579101562	2	515.803823	1029.59309	0.52232	0.00026942	2.9436	0.0015183	3.4659	0.0017877	515.8052607058053	54.97	0.64256	54.764	54.502	55.145	-0.20613					29	17	2	0	0	0	0.03519	1	5914	5914		32.812	0	1	974430			72761	17871	51025	51107	79470	79470					0.07947950083121214
SKQLNSINF	9	Unmodified	_SKQLNSINF_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-2|WNK1	REV__nc|ENSG00000060237|Q9H4A3-2|WNK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7960815429688	2	525.782556	1049.55056	-0.73529	-0.0003866	-0.10408	-5.4724E-05	-0.83937	-0.00044132	525.782628240328	51.918	0.77588	51.918	51.535	52.311	0					34	21	2	0	0	0	0.024495	1	5578	5578		19.997	0	1	734640	+		72762	20250	51026	51108	79471	79471					0.027765549549030766
SKQPKLEKN	9	Unmodified	_SKQPKLEKN_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3115844726562	2	536.31148	1070.60841	-0.77225	-0.00041417	0.86754	0.00046527	0.095293	5.1107E-05	536.3119727707362	97.164	1.1655	97.003	96.595	97.76	-0.16105					58	25	4	0	0	0	0.87448	1	12014	12014		34.173	1.3601	1	651160	+		72763	23231	51027	51109	79472	79472					0.07592816880332975
SKQRKTMS	8	Unmodified	_SKQRKTMS_					0	0	0			REV__ENST00000274498.8_1_5:142259002-142264911:+|nuORF	REV__ENST00000274498.8_1_5:142259002-142264911:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2846984863281	2	483.263476	964.512399	0.020591	9.9508E-06	2.3812	0.0011507	2.4018	0.0011607	483.26409314169524	54.901	0.69233	54.901	54.591	55.284	0					30	19	3	0	0	0	0.027866	1	6015	6015		18.324	1.8513	1	156320	+		72764	29833	51028	51110	79473	79473					0.028723457685941867
SKQTPKIW	8	Unmodified	_SKQTPKIW_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7814025878906	2	494.284734	986.554916	0.05232	2.5861E-05	2.3442	0.0011587	2.3965	0.0011845	494.28491060975756	58.545	1.0496	58.358	58.173	59.222	-0.18705					43	28	2	0	0	0	0.027866	1	6587	6587		79.451	18.479	1	10034000	+		72765	26900	51029	51111	79474	79474					0.0611006416845612
SKQTVLKSH	9	Unmodified	_SKQTVLKSH_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.G204Vfs*2|1|0.17|ENSG00000120071|chr17:46171533-46171533|C/-|frameshift_variant;KANSL1|p.L329Efs*22|1|0.16|ENSG00000120071|chr17:46171158-46171159|AA/-|frameshift_variant	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.30810546875	2	514.298373	1026.58219	-0.072882	-3.7483E-05	-3.2221	-0.0016571	-3.295	-0.0016946	514.2967020808394	54.434	1.109	54.284	53.636	54.745	-0.15036					44	31	2	0	0	0	0.024405	1	5944	5944		27.882	0	1	634220			72766	3792	51030	51112	79475	79475					0.06996547708831713
SKQVVKQGL	9	Unmodified	_SKQVVKQGL_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7805480957031	2	493.803291	985.59203	-0.53871	-0.00026602	2.5737	0.0012709	2.035	0.0010049	493.80428798120744	57.841	0.39086	57.932	57.797	58.188	0.091221					14	10	2	0	0	0	0.016006	1	6489	6489		98.629	29.002	1	326020			72767	4110	51031	51113	79476	79476					0.09865735714231505
SKRAGVVNK	9	Unmodified	_SKRAGVVNK_					0	0	0			REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2905578613281	2	479.793258	957.571963	0.432	0.00020727	-2.9347	-0.0014081	-2.5027	-0.0012008	479.79176936795045	47.093	0.6369	47.093	46.892	47.529	0					27	17	2	0	0	0	0.023061	1	4697	4697		79.713	13.283	1	1636700	+		72768	32527	51032	51114	79477	79477					0.09147984774278939
SKRAGVVNK	9	Unmodified	_SKRAGVVNK_					0	0	0			REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.793258	957.571963	0.39504	0.00018954	3.6136	0.0017338	4.0087	0.0019233	479.79473209059665	46.843	0.36147	46.746	46.572	46.934	-0.096653	-0.11342	0.0022048	NaN	79.713	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125460	+		72769	32527	51032	51114							0.09147984774278939
SKRAGVVNK	9	Unmodified	_SKRAGVVNK_					0	0	0			REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.793258	957.571963	0.024537	1.1773E-05	4.0555	0.0019458	4.0801	0.0019576	479.79513436756264	47.148	0.35486	46.879	46.695	47.05	-0.26939	0.018716	0.0026288	NaN	79.713	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164020	+		72770	32527	51032	51114							0.09147984774278939
SKRAGVVNK	9	Unmodified	_SKRAGVVNK_					0	0	0			REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	REV__ENST00000440317.1_1_2:127315208-127315727:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.793258	957.571963	-0.14387	-6.9028E-05	3.6411	0.001747	3.4972	0.0016779	479.79481984810025	46.916	0.38795	46.722	46.609	46.997	-0.19387	-0.13818	0.0022311	NaN	79.713	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213670	+		72771	32527	51032	51114							0.09147984774278939
SKRAVSATPP	10	Unmodified	_SKRAVSATPP_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2274169921875	2	507.290548	1012.56654	-0.94341	-0.00047858	1.3108	0.00066498	0.36743	0.00018639	507.29109710400877	30.14	0.59661	29.962	29.527	30.124	-0.17818					22	13	2	0	0	0	0.03519	1	1913	1913		52.937	23.767	1	125570			72772	186	51033	51115	79478	79478					0.060762611917994036
SKRAYYKW	8	Unmodified	_SKRAYYKW_					0	0	0			REV__ENST00000471950.1_1_X:70828916-70832410:+|nuORF	REV__ENST00000471950.1_1_X:70828916-70832410:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.7489624023438	2	551.295633	1100.57671	0.47459	0.00026164	-1.4748	-0.00081307	-1.0003	-0.00055144	551.2946527269291	58.52	0.33778	58.279	58.044	58.381	-0.24165					12	7	2	0	0	0	0.027866	1	6420	6420		30.504	2.6214	1	598880	+		72773	24536	51034	51116	79479	79479					0.03044868917027088
SKREPAVVPA	10	Unmodified	_SKREPAVVPA_					0	0	0			REV__ENST00000547760.1_3_14:31897374-31926552:-|nuORF	REV__ENST00000547760.1_3_14:31897374-31926552:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.3049926757812	2	527.306198	1052.59784	0.57506	0.00030323	-3.3221	-0.0017518	-2.7471	-0.0014485	527.3045102353642	98.07	1.4368	97.933	97.377	98.814	-0.13625					64	33	3	0	0	0	1.0271	1	12089	12089		42.396	3.1433	1	643280	+		72774	34869	51035	51117	79480	79480					0.07364834225904815
SKRFTLRSH	9	Unmodified	_SKRFTLRSH_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.802734375	2	566.322714	1130.63087	-0.25222	-0.00014284	2.4427	0.0013833	2.1905	0.0012405	566.3241720320624	78.233	0.59394	77.978	77.66	78.254	-0.25471					22	13	2	0	0	0	0.024506	1	9319	9319		23.042	0	1	196950			72775	8799	51036	51118	79481	79481					0.07078461068613251
SKRFVNVKAS	10	Unmodified	_SKRFVNVKAS_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2962646484375	2	568.332747	1134.65094	0.3389	0.00019261	2.1726	0.0012348	2.5115	0.0014274	568.333479489889	21.392	0.19098	21.215	21.065	21.256	-0.17721					5	3	2	0	0	0	0.03519	1	664	664		8.6937	0	1	10458	+		72776	24273	51037	51119	79482	79482					0.08900212008552444
SKRGIVRR	8	Unmodified	_SKRGIVRR_					0	0	0		nc|ENSG00000173567|Q8IZF5-2|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;ENST00000459892.5_1_2:26531956-26538428:-|nuORF;nc|ENSG00000173567|Q8IZF5-3|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.77691650390625	2	486.314692	970.614831	-1.5706	-0.00076382	-2.828	-0.0013753	-4.3986	-0.0021391	486.31367586774985	37.901	0.30214	37.901	37.667	37.969	0					12	8	2	0	0	0	0.027866	1	3129	3129		20.947	0	1	84037			72777	8384	51038	51120	79483	79483					0.12834799622362425
SKRGKGMA	8	Unmodified	_SKRGKGMA_					0	0	0			REV__ENST00000514123.5_1_16:69458605-69458701:+|nuORF	REV__ENST00000514123.5_1_16:69458605-69458701:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.7327575683594	2	417.734354	833.454156	-0.71423	-0.00029836	-3.1864	-0.0013311	-3.9006	-0.0016294	417.7329459232781	39.272	0.90195	39.108	38.829	39.731	-0.16458					58	23	4	0	0	0	0.93274	1	3329	3329		47.916	12.297	1	5841200	+		72778	34164	51039	51121	79484	79484					0.03076708913965831
SKRGLQITD	9	Unmodified	_SKRGLQITD_					0	0	0		MAGEE2|p.F162L|1|0.5|ENSG00000186675|chrX:75784566-75784566|G/T|missense_variant	MAGEE2|p.F162L|1|0.5|ENSG00000186675|chrX:75784566-75784566|G/T|missense_variant	MAGEE2|p.F162L|1|0.5|ENSG00000186675|chrX:75784566-75784566|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.3021240234375	2	509.288005	1016.56146	0.50755	0.00025849	2.6115	0.00133	3.119	0.0015885	509.29005513932975	54.432	0.69781	54.226	53.913	54.611	-0.20613					39	18	3	0	0	0	0.024511	1	5827	5827		8.6937	0	1	233580			72779	17943	51040	51122	79485	79485					0.053839573291725173
SKRHWYQW	8	Unmodified	_SKRHWYQW_					0	0	0		ENST00000415807.6_1_3:172046791-172048336:+|nuORF	ENST00000415807.6_1_3:172046791-172048336:+|nuORF	ENST00000415807.6_1_3:172046791-172048336:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.7957153320312	2	595.796332	1189.57811	-1.1266	-0.00067121	0.18651	0.00011112	-0.94006	-0.00056008	595.7963833398851	61.125	0.84253	60.872	60.544	61.387	-0.25373					63	20	4	0	0	0	0.91239	1	6837	6837		50.025	4.0726	1	3782800			72780	13887	51041	51123	79486	79486					-0.009094969942225362
SKRIAVAL	8	Unmodified	_SKRIAVAL_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.2298889160156	2	429.281995	856.549437	-0.43983	-0.00018881	-0.029144	-1.2511E-05	-0.46897	-0.00020132	429.28181454513833	27.626	0.37622	27.458	27.273	27.649	-0.16816					11	8	2	0	0	0	0.027866	1	1549	1549		12.959	0	1	110960			72781	2205	51042	51124	79487	79487					0.11542385376640141
SKRLAIPL	8	Unmodified	_SKRLAIPL_					0	0	0			REV__ENST00000505020.1_1_5:26881247-26890759:-|nuORF	REV__ENST00000505020.1_1_5:26881247-26890759:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	449.2613525390625	2	449.297645	896.580737	-0.24566	-0.00011037	0.1305	5.8635E-05	-0.11516	-5.1739E-05	449.29759840308566	41.246	0.66248	41.019	40.653	41.315	-0.2278					26	16	2	0	0	0	0.027866	1	3651	3651		73.975	0	1	251750	+		72782	33997	51043	51125	79488	79488					0.12830958410745552
SKRLFTTNP	9	Unmodified	_SKRLFTTNP_					0	0	0			REV__ENSG00000112039|ENST00000229769|FANCE	REV__ENSG00000112039|ENST00000229769|FANCE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.74658203125	2	532.298373	1062.58219	-0.50343	-0.00026798	-0.50491	-0.00026876	-1.0083	-0.00053674	532.2982446778972	32.394	0.62474	32.236	31.819	32.444	-0.15772					22	14	2	0	0	0	0.024477	1	2230	2230		20.947	6.8098	1	120510	+		72783	21962	51044	51126	79489	79489					0.053405477088290354
SKRLPSHLS	9	Unmodified	_SKRLPSHLS_					0	0	0			REV__ENST00000585839.5_1_19:14578398-14580330:+|nuORF	REV__ENST00000585839.5_1_19:14578398-14580330:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.779296875	2	512.79854	1023.58253	-0.58724	-0.00030114	0.80116	0.00041084	0.21392	0.0001097	512.7985101425656	31.18	1.1402	31.248	30.786	31.927	0.068962					41	27	2	0	0	0	0.024397	1	2047	2047		31.53	2.3803	1	423390	+		72784	35586	51045	51127	79490	79490					0.07167967428711108
SKRLVKEVQ	9	Unmodified	_SKRLVKEVQ_					0	0	0			REV__nc|ENSG00000196365|P36776-2|LONP1	REV__nc|ENSG00000196365|P36776-2|LONP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7300415039062	2	543.835123	1085.65569	0.051635	2.8081E-05	-2.4202	-0.0013162	-2.3685	-0.0012881	544.3348874633582	51.776	0.4039	51.592	51.374	51.778	-0.18404					29	10	4	0	0	0	0.024418	1	5321	5321		30.318	2.2362	1	267640	+		72785	28171	51047	51128	79491	79491					0.11629096151318663
SKRPKPSTT	9	Unmodified	_SKRPKPSTT_					0	0	0			REV__ENSG00000143344|ENST00000360851|RGL1	REV__ENSG00000143344|ENST00000360851|RGL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2908020019531	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.86013	1	10455	10455		35.152	2.3396	1	10571000	+		72786	24229	51048	51129	79492	79492					0.06628261191792717
SKRPSGVSNR	10	Unmodified	_SKRPSGVSNR_					0	0	0		nc|ENSG00000211660|P01705|IGLV2-23	nc|ENSG00000211660|P01705|IGLV2-23	nc|ENSG00000211660|P01705|IGLV2-23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7300415039062	2	544.301978	1086.5894	-0.55019	-0.00029947	3.6382	0.0019803	3.088	0.0016808	544.305678560162	52.202	0.74405	52.018	51.449	52.193	-0.18404					25	19	2	0	0	0	0.03519	1	5321	5321		41.427	0	1	224020			72787	18685	51049	51130	79493	79493					0.049572803092814866
SKRREPGLAV	10	Unmodified	_SKRREPGLAV_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	556.2633056640625	2	556.830372	1111.64619	-0.056688	-3.1566E-05	3.9616	0.0022059	3.9049	0.0021743	556.8326919104485	32.246	0.17564	32.01	31.91	32.086	-0.23667					5	3	2	0	0	0	0.03519	1	2197	2197		22.58	9.7679	1	27219	+		72788	26473	51050	51131	79494	79494					0.0948332786579158
SKRREPGLAV	10	Unmodified	_SKRREPGLAV_					0	0	0			REV__ENSG00000170456|ENST00000389082|DENND5B	REV__ENSG00000170456|ENST00000389082|DENND5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	556.830372	1111.64619	0.31841	0.0001773	2.0672	0.0011511	2.3856	0.0013284	557.3333465661538	32.309	0.13293	32.116	32.029	32.162	-0.19261	0.039474	-0.00176	NaN	22.58	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17628	+		72789	26473	51050	51131							0.0948332786579158
SKRRGGSS	8	Unmodified	_SKRRGGSS_					0	0	0			REV__nc|ENSG00000065883|Q14004-2|CDK13	REV__nc|ENSG00000065883|Q14004-2|CDK13	MSMS	OPSCC_40_ClassI_Rep-3	6	417.7328796386719	2	417.730658	833.446762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.42	1	39.194	38.694	39.694	-0.2257								0	0	0	0.66038	1	3321	3321		44.117	5.3107	1		+		72790	20324	51051	51132	79495	79495					0.023376926379114593
SKRRWAPI	8	Unmodified	_SKRRWAPI_					0	0	0		nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.3007507324219	2	507.303793	1012.59303	-0.21371	-0.00010841	-1.5664	-0.00079462	-1.7801	-0.00090304	507.3026686766094	55.682	0.36599	55.466	55.336	55.702	-0.21607					12	9	2	0	0	0	0.027866	1	5995	5995		11.511	0	1	182800			72791	4826	51052	51133	79496	79496					0.08723994873787433
SKRSCKGA	8	Unmodified	_SKRSCKGA_					0	0	0		BBX|p.E612K|1|0.19|ENSG00000114439|chr3:107773555-107773555|G/A|missense_variant	BBX|p.E612K|1|0.19|ENSG00000114439|chr3:107773555-107773555|G/A|missense_variant	BBX|p.E612K|1|0.19|ENSG00000114439|chr3:107773555-107773555|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.7328796386719	2	418.723987	835.433421	-0.46891	-0.00019634	1.562	0.00065406	1.0931	0.00045772	418.7243790001985	39.442	0.42054	39.219	38.961	39.382	-0.22311					13	10	2	0	0	0	0.027866	1	3342	3342		40.573	20.091	1	91088			72792	178	51053	51134	79497	79497					0.009121185342905846
SKRSFSKGCES	11	Unmodified	_SKRSFSKGCES_					0	0	0			REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.7398376464844	3	405.8644	1214.57137	0.28907	0.00011732	-4.3023	-0.0017462	-4.0133	-0.0016288	406.19608867287735	31.538	0.38041	31.297	31.185	31.565	-0.24109					10	9	2	0	0	0	0.024734	1	2132	2132		43.419	1.9919	1	44867	+		72793	28612	51054	51135	79498	79498					-0.027332227277383936
SKRSLPLLW	9	Unmodified	_SKRSLPLLW_					0	0	0		ENST00000515038.1_1_5:139060994-139061036:+|nuORF;ENST00000511048.1_1_5:139060964-139062454:+|nuORF	ENST00000515038.1_1_5:139060994-139061036:+|nuORF	ENST00000515038.1_1_5:139060994-139061036:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.3343505859375	2	550.334759	1098.65496	0.47155	0.00025951	-0.70307	-0.00038692	-0.23152	-0.00012741	550.3342115978216	74.476	0.67651	74.293	74.005	74.682	-0.18278					32	15	3	0	0	0	0.80003	1	8772	8772		39.253	2.0937	1	987990			72794	15830	51055	51136	79499	79499					0.10958301502273571
SKRVSHGQIKQ	11	Unmodified	_SKRVSHGQIKQ_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.24578857421875	3	423.245832	1266.71567	-1.3181	-0.00055786	1.0837	0.00045866	-0.23438	-9.9198E-05	423.2462779160847	30.697	0.8731	30.697	30.384	31.257	0					62	20	5	0	0	0	1.017	1	1993	1993		33.039	1.9713	1	2046200			72795	9914	51056	51137	79500	79500					0.09297786814568099
SKRVSHGQIKQ	11	Unmodified	_SKRVSHGQIKQ_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	423.245832	1266.71567	-0.52209	-0.00022097	0.37504	0.00015873	-0.14705	-6.224E-05	423.24595649376425	30.637	1.0896	30.646	30.289	31.378	0.0086689	0.05628	-0.00036602	NaN	33.039	70	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1875600			72796	9914	51056	51137							0.09297786814568099
SKRVSHGQIKQ	11	Unmodified	_SKRVSHGQIKQ_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	423.245832	1266.71567	-0.49589	-0.00020988	0.39098	0.00016548	-0.10491	-4.4404E-05	423.24599003148285	30.352	1.0426	30.426	30.17	31.213	0.074314	-0.16342	-0.00034578	NaN	33.039	75	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1641200			72797	9914	51056	51137							0.09297786814568099
SKRWLKCS	8	Unmodified	_SKRWLKCS_					0	0	0		ENST00000455584.2_1_17:15539522-15546081:-|nuORF	ENST00000455584.2_1_17:15539522-15546081:-|nuORF	ENST00000455584.2_1_17:15539522-15546081:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2624206542969	2	504.276386	1006.53822	-0.035671	-1.7988E-05	2.3655	0.0011929	2.3298	0.0011749	504.27735337062603	71.399	0.90383	71.137	70.734	71.638	-0.26199					42	21	4	0	0	0	0.027866	1	8287	8287		90.37	46.253	1	817810			72798	14585	51057	51138	79501	79501					0.03521240010866222
SKSAAPMKSAR	11	Unmodified	_SKSAAPMKSAR_					0	0	0			REV__nc|ENSG00000159374|Q8TC57-4|M1AP	REV__nc|ENSG00000159374|Q8TC57-4|M1AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.2539672851562	2	567.308415	1132.60228	-0.17452	-9.9006E-05	-0.52263	-0.0002965	-0.69715	-0.0003955	567.3082316733439	30.836	0.97556	30.683	30.257	31.232	-0.15231					45	23	4	0	0	0	0.024753	1	1974	1974		19.263	0	1	116200	+		72799	25250	51058	51139	79502	79502					0.04127975377150506
SKSDRSRW	8	Unmodified	_SKSDRSRW_					0	0	0		ENST00000215912.9_3_22:31678754-31679060:-|nuORF	ENST00000215912.9_3_22:31678754-31679060:-|nuORF	ENST00000215912.9_3_22:31678754-31679060:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2824401855469	2	511.262322	1020.51009	0.77655	0.00039702	1.754	0.00089674	2.5305	0.0012938	511.2626848972021	97.806	0.22429	97.669	97.514	97.738	-0.13671					6	4	2	0	0	0	0.027866	1	12100	12100		34.173	3.6689	1	13228			72800	11148	51059	51140	79503	79503					0.0006563335514329083
SKSENARLV	9	Unmodified	_SKSENARLV_					0	0	0		KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;CON__A2A5Y0	KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	KRT33A|p.V279Afs*24|1|0.06|ENSG00000006059|chr17:41346884-41346885|-/CCGTG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.3092956542969	2	502.28018	1002.54581	-0.30116	-0.00015127	0.48128	0.00024174	0.18012	9.047E-05	502.2801931320177	31.798	0.56414	31.867	31.567	32.131	0.068962					33	13	4	0	0	0	0.024292	1	2118	2118		58.782	9.3404	1	843780		+	72801	495	51060	51141	79504	79504					0.04463670812151577
SKSESKRL	8	Unmodified	_SKSESKRL_					0	0	0			REV__ENSG00000104369|ENST00000342232|JPH1;REV__JPH3|p.L354Cfs*117|1|0.25|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant	REV__JPH3|p.L354Cfs*117|1|0.25|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7701721191406	2	467.769448	933.524344	3.4025	0.0015916	-2.0967	-0.00098078	1.3058	0.00061081	467.76843633358493	17.869	0.93027	17.869	17.647	18.577	0					33	18	2	0	0	0	1.043	1	243	243		30.504	0	1	1027900	+		72802	24934;21440	51061	51142	79505	79505					0.054922857834299066
SKSEVLKTVS	10	Unmodified	_SKSEVLKTVS_					0	0	0			REV__nc|ENSG00000184619|Q6ZNG9|KRBA2	REV__nc|ENSG00000184619|Q6ZNG9|KRBA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2459106445312	2	539.311146	1076.60774	-0.73176	-0.00039464	1.5392	0.00083013	0.80749	0.00043549	539.3118289073524	35.493	0.31904	35.281	35.115	35.434	-0.21246					12	7	2	0	0	0	0.03519	1	2717	2717		24.519	0	1	144270	+		72803	37012	51062	51143	79506	79506					0.07249977440596922
SKSGAKTR	8	Unmodified	_SKSGAKTR_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.7328796386719	2	417.743234	833.471915	0.22807	9.5275E-05	-1.8226	-0.00076138	-1.5945	-0.00066611	417.7425166200682	39.429	0.18313	39.203	39.096	39.279	-0.2257					5	4	2	0	0	0	0.027866	1	3321	3321		40.778	23.413	1	83296	+		72804	24975	51063	51144	79507	79507					0.0485174744046617
SKSISSLLL	9	Unmodified	_SKSISSLLL_					0	0	0		ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.2652893066406	2	474.292225	946.569897	-1.7953	-0.00085148	-0.34405	-0.00016318	-2.1393	-0.0010147	474.2928282960515	52.197	0.89242	51.928	51.62	52.513	-0.26903					63	23	5	0	0	0	0.024487	1	5406	5406		17.365	0	1	1280800			72805	14195	51064	51145	79508	79508					0.09447511245809892
SKSISSLLL	9	Unmodified	_SKSISSLLL_					0	0	0		ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	474.292225	946.569897	0.76478	0.00036273	-0.82329	-0.00039048	-0.058514	-2.7753E-05	474.29173542749254	51.985	1.044	51.985	51.667	52.711	0	0.091577	-0.00032406	NaN	21.96	59	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2203900			72806	14195	51064	51145							0.09447511245809892
SKSISSLLL	9	Unmodified	_SKSISSLLL_					0	0	0		ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	474.292225	946.569897	0.35364	0.00016773	-2.3706	-0.0011244	-2.017	-0.00095664	474.2919384346358	52.093	1.0404	51.946	51.642	52.682	-0.14735	0.052866	-0.0017918	NaN	21.96	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1976800			72807	14195	51064	51145							0.09447511245809892
SKSISSLLL	9	Unmodified	_SKSISSLLL_					0	0	0		ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	474.292225	946.569897	-0.51508	-0.0002443	0.64756	0.00030713	0.13249	6.2838E-05	474.29272630384077	51.831	1.2486	51.919	51.612	52.86	0.08852	0.026507	0.0010712	NaN	21.96	75	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1685500			72808	14195	51064	51145							0.09447511245809892
SKSISSLLL	9	Unmodified	_SKSISSLLL_					0	0	0		ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	ENST00000432045.6_1_7:130597827-130598010:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.292225	946.569897	0.071973	3.4136E-05	-0.2451	-0.00011625	-0.17313	-8.2112E-05	474.2919925170397	51.9	0.8567	51.781	51.504	52.361	-0.11875	-0.11162	0.00022441	NaN	21.96	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1233300			72809	14195	51064	51145							0.09447511245809892
SKSKCYVNVY	10	Unmodified	_SKSKCYVNVY_					0	0	0		ENST00000308377.8_1_17:33679331-33679385:-|nuORF	ENST00000308377.8_1_17:33679331-33679385:-|nuORF	ENST00000308377.8_1_17:33679331-33679385:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.7953491210938	2	595.797349	1189.58014	-0.66078	-0.00039369	-1.6297	-0.00097097	-2.2905	-0.0013647	595.7962758614691	61.063	1.0491	60.857	60.543	61.592	-0.20599					65	25	4	0	0	0	1.0616	1	6804	6804		37.812	3.8899	1	4030500			72810	12028	51065	51146	79509	79509					-0.007062490912858266
SKSKCYVNVY	10	Unmodified	_SKSKCYVNVY_					0	0	0		ENST00000308377.8_1_17:33679331-33679385:-|nuORF	ENST00000308377.8_1_17:33679331-33679385:-|nuORF	ENST00000308377.8_1_17:33679331-33679385:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	595.7954711914062	2	595.797349	1189.58014	-1.1266	-0.00067121	-1.52	-0.00090558	-2.6465	-0.0015768	595.7963833398851	61.125	0.84253	60.872	60.544	61.387	-0.25373					63	20	4	0	0	0	1.0271	1	6822	6822		42.396	0	1	3782800			72811	12028	51065	51146	79510	79510					-0.007062490912858266
SKSKKRKKSR	10	Unmodified	_SKSKKRKKSR_					0	0	0			REV__nc|ENSG00000131051|Q14498-2|RBM39	REV__nc|ENSG00000131051|Q14498-2|RBM39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.5635070800781	3	411.601839	1231.78369	-0.12636	-5.201E-05	-0.17039	-7.0133E-05	-0.29675	-0.00012214	411.6017116156371	32.564	0.20045	32.407	32.323	32.524	-0.15772					6	4	2	0	0	0	0.03519	1	2229	2229		17.167	0.44936	1	34835	+		72812	36654	51066	51147	79511	79511					0.17706656465202286
SKSLIILLV	9	Unmodified	_SKSLIILLV_					0	0	0			REV__ENST00000425583.6_1_4:48853950-48862750:+|nuORF	REV__ENST00000425583.6_1_4:48853950-48862750:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3053283691406	2	493.336436	984.658318	0.48081	0.0002372	2.3207	0.0011449	2.8015	0.0013821	493.33771073004965	69.479	0.33643	69.186	69.09	69.427	-0.29291					16	8	3	0	0	0	0.024541	1	8321	8321		19.36	0	1	584050	+		72813	32257	51067	51148	79512	79512					0.1653755155628005
SKSLLSQLL	9	Unmodified	_SKSLLSQLL_					0	0	0		ENST00000257209.8_1_18:34359727-34359823:+|nuORF	ENST00000257209.8_1_18:34359727-34359823:+|nuORF	ENST00000257209.8_1_18:34359727-34359823:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7657775878906	2	494.8055	987.596446	-1.3603	-0.00067306	0.2921	0.00014453	-1.0682	-0.00052853	494.8054645189105	40.712	0.9226	40.482	40.235	41.157	-0.23029					44	24	3	0	0	0	0.024438	1	3571	3571		36.447	9.6506	1	967360			72814	11403	51068	51149	79513	79513					0.10215200137145075
SKSLSIKREG	10	Unmodified	_SKSLSIKREG_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.804443359375	2	552.822212	1103.62987	-1.126	-0.0006225	2.7443	0.0015171	1.6182	0.00089459	552.8234200417239	25.53	0.28793	25.496	25.351	25.639	-0.034395					11	6	2	0	0	0	0.03519	1	1196	1196		42.864	16.171	1	49008	+		72815	28316	51069	51150	79514	79514					0.08220201909011848
SKSMKELK	8	Unmodified	_SKSMKELK_					0	0	0		ENSG00000159496|ENST00000290691|RGL4;nc|ENSG00000159496|Q8IZJ4-2|RGL4	ENSG00000159496|ENST00000290691|RGL4	ENSG00000159496|ENST00000290691|RGL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.7275085449219	2	475.770603	949.526652	-0.25582	-0.00012171	-4.3483	-0.0020688	-4.6041	-0.0021905	475.76893463649657	26.674	0.41315	26.506	26.224	26.638	-0.16816					15	9	3	0	0	0	0.027866	1	1385	1385		20.947	4.4738	1	54934			72816	6751	51070	51151	79515	79515					0.04986998196875447
SKSNLNPDA	9	Unmodified	_SKSNLNPDA_					0	0	0		ENSG00000124374|ENST00000244221|PAIP2B	ENSG00000124374|ENST00000244221|PAIP2B	ENSG00000124374|ENST00000244221|PAIP2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.810791015625	2	473.235439	944.456324	0.57979	0.00027438	-1.8709	-0.00088538	-1.2911	-0.00061101	473.2346656412534	21.536	0.47776	21.359	21.065	21.543	-0.17721					13	9	2	0	0	0	0.024539	1	698	698		14.865	2.6582	1	29776			72817	4044	51071	51152	79516	79516					-0.018125838672517602
SKSPPLHDPQ	10	Unmodified	_SKSPPLHDPQ_					0	0	0			REV__ENST00000609557.1_1_22:31318480-31320940:+|nuORF	REV__ENST00000609557.1_1_22:31318480-31320940:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2249145507812	2	553.285463	1104.55637	-0.45739	-0.00025306	2.4397	0.0013498	1.9823	0.0010968	553.286589679431	31.111	0.24025	30.869	30.794	31.034	-0.24109					9	5	2	0	0	0	0.03519	1	2030	2030		23.523	6.1577	1	71493	+		72818	32387	51072	51153	79517	79517					0.008276534665810686
SKSPPLHDPQ	10	Unmodified	_SKSPPLHDPQ_					0	0	0			REV__ENST00000609557.1_1_22:31318480-31320940:+|nuORF	REV__ENST00000609557.1_1_22:31318480-31320940:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.285463	1104.55637	-0.37515	-0.00020757	1.6906	0.00093541	1.3155	0.00072784	553.286356583419	31.21	0.23951	31.058	30.846	31.085	-0.15231	0.094165	-0.00027645	NaN	12.207	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64573	+		72819	32387	51072	51153							0.008276534665810686
SKSRQIFGVIL	11	Unmodified	_SKSRQIFGVIL_					0	0	0		ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B;ENST00000432242.5_1_2:98736050-98809363:+|nuORF;nc|ENSG00000168658|Q502W6-2|VWA3B;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF	ENSG00000168658|ENST00000477737|VWA3B	ENSG00000168658|ENST00000477737|VWA3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.3753051757812	2	624.377155	1246.73976	-0.20761	-0.00012963	4.3634	0.0027244	4.1558	0.0025948	624.3798605066477	100.67	0.51039	100.66	100.38	100.89	-0.0054398					22	12	2	0	0	0	1.0344	1	12822	12822		29.17	3.596	1	490580			72820	7850	51073	51154	79518	79518					0.12625627248235105
SKSSKAVVH	9	Unmodified	_SKSSKAVVH_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.78814697265625	2	471.771991	941.529429	0.53759	0.00025362	-0.3459	-0.00016319	0.19168	9.043E-05	471.77172523416067	24.037	0.54423	24.115	24.003	24.547	0.078344					17	11	2	0	0	0	0.024523	1	950	950		21.96	13.729	1	190560			72821	3751	51074	51155	79519	79519					0.05632589646040742
SKSSKAVVH	9	Unmodified	_SKSSKAVVH_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.771991	941.529429	0.042725	2.0156E-05	0.37201	0.0001755	0.41474	0.00019566	471.772070658986	24.102	0.30485	24.102	24.036	24.341	0	-0.0070939	0.00038365	NaN	21.96	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227830			72822	3751	51074	51155							0.05632589646040742
SKSSKAVVH	9	Unmodified	_SKSSKAVVH_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.771991	941.529429	-0.58615	-0.00027653	0.56561	0.00026684	-0.020539	-9.6898E-06	471.77213170557536	24.157	0.3079	24.11	24	24.308	-0.047148	0.00094827	0.00056632	NaN	21.96	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146340			72823	3751	51074	51155							0.05632589646040742
SKSSKKKRKKR	11	Unmodified	_SKSSKKKRKKR_					0	0	0			REV__ENSG00000006062|ENST00000344686|MAP3K14	REV__ENSG00000006062|ENST00000344686|MAP3K14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.2496643066406	3	454.30016	1359.87865	-0.15199	-6.9051E-05	3.0045	0.0013649	2.8525	0.0012959	454.301397738543	17.891	0.49752	17.685	17.464	17.962	-0.20669					21	9	4	0	0	0	0.02486	1	221	221		12.957	2.3707	1	26130	+		72824	19821	51075	51156	79520	79520					0.2131058993638817
SKSSLKSA	8	Unmodified	_SKSSLKSA_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	404.2328796386719	2	404.232168	806.449782	1.5545	0.00062839	-0.33094	-0.00013378	1.2236	0.00049461	404.2317363749905	84.372	3.2452	84.398	82.917	86.162	0.026558					196	76	5	0	0	0	1.0574	1	10524	10524		23.042	0	1	13913000	+		72825	24322	51076	51157	79521	79521					0.03881522972039875
SKSSLKSA	8	Unmodified	_SKSSLKSA_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.2323913574219	2	404.232168	806.449782	1.0121	0.00040911	-0.92001	-0.0003719	0.092071	3.7218E-05	404.23139167618297	81.763	1.0642	81.57	81.254	82.318	-0.19334					55	24	3	0	0	0	1.0574	1	9857	9857		20.947	0	1	962360	+		72826	24322	51076	51157	79522	79522					0.03881522972039875
SKSSLKSA	8	Unmodified	_SKSSLKSA_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.23236083984375	2	404.232168	806.449782	-0.8493	-0.00034331	1.273	0.00051457	0.42366	0.00017126	404.23229146512006	81.705	0.8959	81.563	81.275	82.17	-0.14248					46	20	3	0	0	0	1.0284	1	9818	9818		32.812	2.4947	1	740400	+		72827	24322	51076	51157	79523	79523					0.03881522972039875
SKSSLKSA	8	Unmodified	_SKSSLKSA_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	404.232168	806.449782	0.24729	9.9963E-05	-0.27134	-0.00010969	-0.024053	-9.7229E-06	404.23162228285264	81.623	0.88869	81.492	81.217	82.105	-0.13075	-0.032324	0.00036503	NaN	32.812	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	949550	+		72828	24322	51076	51157							0.03881522972039875
SKSSLKSA	8	Unmodified	_SKSSLKSA_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.232168	806.449782	1.4648	0.0005921	-4.0805	-0.0016495	-2.6158	-0.0010574	404.22961782051146	81.5	2.2181	81.524	80.696	82.914	0.023911	-0.00058738	-0.0027145	NaN	32.812	85	53	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797870	+		72829	24322	51076	51157							0.03881522972039875
SKSVIVKSV	9	Unmodified	_SKSVIVKSV_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.810791015625	2	473.800217	945.585882	0.63908	0.0003028	-1.1056	-0.00052381	-0.46647	-0.00022102	473.7995715625347	21.76	0.28992	21.582	21.35	21.64	-0.17721					9	5	2	0	0	0	0.024541	1	698	698		13.454	4.6317	1	16381			72830	3946	51077	51158	79524	79524					0.1109121748271491
SKSVLTNE	8	Unmodified	_SKSVLTNE_					0	0	0			REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.23602294921875	2	439.234907	876.455261	-0.27481	-0.00012071	1.99	0.0008741	1.7152	0.00075339	439.2355521862388	25.576	0.71518	25.405	25.122	25.837	-0.17078					35	17	3	0	0	0	0.95679	1	1231	1231		44.117	0	1	699680	+		72831	26949	51078	51159	79525	79525					0.012092017638565267
SKTALRLHER	10	Unmodified	_SKTALRLHER_					0	0	0		ENST00000461789.1_1_20:23345881-23349399:+|nuORF;ENSG00000125812|ENST00000338121|GZF1	ENST00000461789.1_1_20:23345881-23349399:+|nuORF	ENST00000461789.1_1_20:23345881-23349399:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8556518554688	2	605.854378	1209.6942	0.33333	0.00020195	2.0886	0.0012654	2.4219	0.0014673	605.855435743201	82.134	1.6348	82.024	81.646	83.28	-0.11006					91	38	5	0	0	0	0.88978	1	10206	10206		54.722	5.1863	1	2457500			72832	4141	51079	51160	79526	79526					0.09774401785830378
SKTALRLHER	10	Unmodified	_SKTALRLHER_					0	0	0		ENST00000461789.1_1_20:23345881-23349399:+|nuORF;ENSG00000125812|ENST00000338121|GZF1	ENST00000461789.1_1_20:23345881-23349399:+|nuORF	ENST00000461789.1_1_20:23345881-23349399:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	605.85595703125	2	605.854378	1209.6942	-0.21421	-0.00012978	2.3501	0.0014238	2.1359	0.0012941	605.8556684179202	82.138	1.2043	81.955	81.559	82.763	-0.18237					89	27	5	0	0	0	0.78438	1	9893	9893		61.691	10.499	1	2719900			72833	4141	51079	51160	79527	79527					0.09774401785830378
SKTALRLHER	10	Unmodified	_SKTALRLHER_					0	0	0		ENST00000461789.1_1_20:23345881-23349399:+|nuORF;ENSG00000125812|ENST00000338121|GZF1	ENST00000461789.1_1_20:23345881-23349399:+|nuORF	ENST00000461789.1_1_20:23345881-23349399:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8555297851562	2	605.854378	1209.6942	-0.99481	-0.00060271	3.1261	0.001894	2.1313	0.0012913	605.8561374564249	82.054	1.4639	81.914	81.572	83.036	-0.14014					87	33	4	0	0	0	0.65479	1	9864	9864		70.816	3.3225	1	2530200			72834	4141	51079	51160	79528	79528					0.09774401785830378
SKTAVLKV	8	Unmodified	_SKTAVLKV_					0	0	0		ENST00000463003.1_1_13:115086670-115089303:+|nuORF	ENST00000463003.1_1_13:115086670-115089303:+|nuORF	ENST00000463003.1_1_13:115086670-115089303:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2752380371094	2	423.276378	844.538203	0.89158	0.00037738	-4.0135	-0.0016988	-3.122	-0.0013214	423.274572191514	110.14	0.65965	110.14	109.81	110.47	0					38	20	3	0	0	0	1.0574	1	14013	14013		18.324	3.6603	1	449880			72835	14724	51080	51161	79529	79529					0.10971563282521402
SKTETLGV	8	Unmodified	_SKTETLGV_					0	0	0			REV__ENSG00000109689|ENST00000467087|STIM2	REV__ENSG00000109689|ENST00000467087|STIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.7328796386719	2	417.732	833.449448	-0.50263	-0.00020997	2.072	0.00086555	1.5694	0.00065558	417.73281061692586	39.391	1.1446	39.168	38.823	39.967	-0.22311					72	29	4	0	0	0	0.93274	1	3342	3342		47.916	3.7988	1	6558900	+		72836	21810	51081	51162	79530	79530					0.026061032522079586
SKTFPTRKV	9	Unmodified	_SKTFPTRKV_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7899780273438	2	532.316566	1062.61858	1.724	0.00091772	-1.9222	-0.0010232	-0.1982	-0.00010551	532.3152817827943	24.028	0.48905	23.847	23.582	24.072	-0.18089					21	10	3	0	0	0	0.024506	1	1002	1002		6.3127	0	1	104900			72837	1691	51082	51163	79531	79531					0.0897742460556401
SKTIGQRDSL	10	Unmodified	_SKTIGQRDSL_					0	0	0			REV__nc|ENSG00000064655|O00167-2|EYA2	REV__nc|ENSG00000064655|O00167-2|EYA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8037109375	2	552.80402	1103.59349	-1.1078	-0.00061237	0.69076	0.00038185	-0.417	-0.00023052	552.8044316655643	25.568	0.99389	25.534	25.238	26.232	-0.034395					72	23	5	0	0	0	0.98527	1	1245	1245		47.96	1.5027	1	7381700	+		72838	20290	51083	51164	79532	79532					0.04583325012322348
SKTKMKPQ	8	Unmodified	_SKTKMKPQ_					0	0	0			REV__ENSG00000149658|ENST00000370339|YTHDF1	REV__ENSG00000149658|ENST00000370339|YTHDF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7189636230469	2	474.27077	946.526987	-0.40174	-0.00019054	1.4239	0.00067531	1.0221	0.00048477	474.2713262829259	27.971	0.3969	27.819	27.526	27.922	-0.15195					14	9	2	0	0	0	0.027866	1	1555	1555		9.7057	0	1	82074	+		72839	24696	51084	51165	79533	79533					0.051584179167321054
SKTKMRRGE	9	Unmodified	_SKTKMRRGE_					0	0	0		ENST00000367306.5_1_1:201453202-201453502:-|nuORF	ENST00000367306.5_1_1:201453202-201453502:-|nuORF	ENST00000367306.5_1_1:201453202-201453502:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.781494140625	2	546.800757	1091.58696	-0.1919	-0.00010493	-1.3664	-0.00074717	-1.5583	-0.0008521	546.800570670393	75.403	0.23553	75.228	75.154	75.389	-0.17548					6	5	2	0	0	0	0.024539	1	8924	8924		27.882	15.675	1	67563			72840	12852	51085	51166	79534	79534					0.04483108579961481
SKTKNQKPA	9	Unmodified	_SKTKNQKPA_					0	0	0			REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	REV__ENST00000396827.3_1_6:28348556-28350043:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3052062988281	2	501.290548	1000.56654	-0.060498	-3.0327E-05	-1.4558	-0.00072978	-1.5163	-0.00076011	501.2918390090931	60.102	0.79495	59.926	59.281	60.076	-0.1761					30	20	4	0	0	0	0.024436	1	6674	6674		30.504	0	1	404040	+		72841	31749	51086	51167	79535	79535					0.06628261191792717
SKTKPKPTV	9	Unmodified	_SKTKPKPTV_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7804870605469	2	493.305667	984.596781	0.35371	0.00017449	-2.319	-0.001144	-1.9653	-0.00096948	493.30530819572317	58.053	0.32098	58.053	57.872	58.193	0					11	8	2	0	0	0	0.023837	1	6584	6584		64.207	16.55	1	204190	+		72842	37281	51087	51168	79536	79536					0.10386619856990364
SKTKPKPTV	9	Unmodified	_SKTKPKPTV_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7805480957031	2	493.305667	984.596781	0.26885	0.00013263	-2.9845	-0.0014723	-2.7157	-0.0013396	493.3043070342646	58.575	0.98385	58.666	57.835	58.819	0.091217					43	26	3	0	0	0	0.021513	1	6489	6489		71.877	10.906	1	617820	+		72843	37281	51087	51168	79537	79537					0.10386619856990364
SKTLGLVPLE	10	Unmodified	_SKTLGLVPLE_					0	0	0			REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3421630859375	2	528.818607	1055.62266	-1.2561	-0.00066425	-0.79436	-0.00042007	-2.0505	-0.0010843	528.8171307202435	83.936	0.52289	83.936	83.605	84.128	0					16	11	2	0	0	0	0.03519	1	10517	10517		42.864	17.29	1	106430	+		72844	21757	51088	51169	79538	79538					0.09707469308614236
SKTLGLVPLE	10	Unmodified	_SKTLGLVPLE_					0	0	0			REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	REV__ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.818607	1055.62266	0.38117	0.00020157	-3.9676	-0.0020981	-3.5864	-0.0018966	528.814829464543	84.068	0.13161	83.93	83.845	83.977	-0.13789	-0.0030719	-0.00013263	NaN	21.686	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15813	+		72845	21757	51088	51169							0.09707469308614236
SKTLVLSNL	9	Unmodified	_SKTLVLSNL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7978515625	2	487.797675	973.580796	-0.47015	-0.00022934	-0.66802	-0.00032586	-1.1382	-0.0005552	487.7972225991239	75.737	1.5239	75.492	75.191	76.715	-0.24455					98	39	4	0	0	0	0.30449	1	9251	9251		75.043	3.1658	1	9873000			72846	3405	51089	51170	79539	79539					0.0929491362007866
SKTNRQKL	8	Unmodified	_SKTNRQKL_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79083251953125	2	487.790715	973.566878	-0.9621	-0.0004693	0.73582	0.00035893	-0.22627	-0.00011037	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.99042	1	10319	10319		38.806	1.7777	1	1891000			72847	18329	51090	51171	79540	79540					0.0790368091164737
SKTRPLGPE	9	Unmodified	_SKTRPLGPE_					0	0	0			REV__ENST00000470814.1_1_22:19709577-19710004:+|nuORF	REV__ENST00000470814.1_1_22:19709577-19710004:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.3110656738281	2	492.777274	983.539994	-0.35805	-0.00017644	3.8569	0.0019006	3.4988	0.0017241	492.7790070355824	61.814	0.44242	61.814	61.566	62.009	0					16	11	2	0	0	0	0.024381	1	7165	7165		15.642	0	1	162200	+		72848	33162	51091	51172	79541	79541					0.04756572300470907
SKTSSQMPE	9	Unmodified	_SKTSSQMPE_					0	0	0		ENST00000537982.5_1_12:64174164-64174891:+|nuORF	ENST00000537982.5_1_12:64174164-64174891:+|nuORF	ENST00000537982.5_1_12:64174164-64174891:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.7455139160156	2	497.729132	993.44371	-0.083913	-4.1766E-05	-0.97646	-0.00048601	-1.0604	-0.00052778	497.72890882279427	74.896	0.55924	74.907	74.69	75.25	0.010376					17	13	2	0	0	0	0.024381	1	9113	9113		37.159	1.5408	1	217090			72849	16382	51092	51173	79542	79542					-0.05327363321782741
SKTVSPLEV	9	Unmodified	_SKTVSPLEV_					0	0	0		ENST00000418609.5_1_4:186541272-186544193:-|nuORF	ENST00000418609.5_1_4:186541272-186544193:-|nuORF	ENST00000418609.5_1_4:186541272-186544193:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.78167724609375	2	480.274032	958.533512	-1.0637	-0.00051085	0.4072	0.00019557	-0.65646	-0.00031528	480.27400220095194	44.256	0.4658	44.012	43.79	44.256	-0.2444					33	12	4	0	0	0	0.024495	1	4068	4068		14.137	0	1	951730			72850	13940	51093	51174	79543	79543					0.05258634349092972
SKTVWYSVP	9	Unmodified	_SKTVWYSVP_					0	0	0		ENSG00000103089|ENST00000219368|FA2H	ENSG00000103089|ENST00000219368|FA2H	ENSG00000103089|ENST00000219368|FA2H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.2590942382812	2	533.782025	1065.5495	-1.0296	-0.00054958	1.9094	0.0010192	0.87976	0.0004696	533.7828664978251	66.241	0.73515	66.028	65.753	66.488	-0.21327					56	18	4	0	0	0	0.024292	1	7631	7631		58.782	32.089	1	673010			72851	2467	51094	51175	79544	79544					0.01934340586012695
SKVDNLVVN	9	Unmodified	_SKVDNLVVN_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2893981933594	2	494.277106	986.53966	-0.22138	-0.00010942	1.2946	0.00063991	1.0733	0.00053049	494.27789770894594	61.739	0.33612	61.739	61.605	61.941	0					12	8	2	0	0	0	0.024427	1	7141	7141		19.997	0	1	291990			72852	6249	51095	51176	79545	79545					0.04585152580625618
SKVDNLVVN	9	Unmodified	_SKVDNLVVN_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.277106	986.53966	-0.2969	-0.00014675	-4.0998	-0.0020265	-4.3967	-0.0021732	494.27469224305406	62.245	0.46974	62.018	61.65	62.119	-0.22663	0.15994	-0.0028907	NaN	19.997	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390750			72853	6249	51095	51176							0.04585152580625618
SKVHGVRY	8	Unmodified	_SKVHGVRY_					0	0	0		nc|ENSG00000135100|P20823-7|HNF1A;nc|ENSG00000135100|P20823-6|HNF1A;nc|ENSG00000135100|P20823-3|HNF1A;nc|ENSG00000135100|P20823-2|HNF1A;nc|ENSG00000135100|P20823|HNF1A;ENSG00000135100|ENST00000257555|HNF1A	nc|ENSG00000135100|P20823-7|HNF1A	nc|ENSG00000135100|P20823-7|HNF1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.25701904296875	2	473.266876	944.519199	0.40056	0.00018957	-1.5814	-0.0007484	-1.1808	-0.00055883	473.2661929733837	75.132	0.56174	74.888	74.591	75.153	-0.24455					23	13	2	0	0	0	0.027866	1	9133	9133		18.324	0	1	158810			72854	18291	51096	51177	79546	79546					0.044720267114598755
SKVLISEEV	9	Unmodified	_SKVLISEEV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	OPSCC_39_ClassI_Rep-3	3	502.2869873046875	2	502.28714	1002.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.762	1	62.817	62.317	63.317	0.055504								0	0	0	0.31227	1	7233	7233		67.494	1.0644	1				72855	6479	51097	51178	79547	79547					0.05854903520582866
SKVLNFYVA	9	Unmodified	_SKVLNFYVA_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7435913085938	2	520.792392	1039.57023	-0.59256	-0.0003086	-3.6047	-0.0018773	-4.1972	-0.0021859	521.2928615003991	37.939	0.38226	37.759	37.557	37.939	-0.17929					16	10	2	0	0	0	0.024405	1	3090	3090		35.618	0	1	246240			72856	5969	51098	51179	79548	79548					0.05202930965674568
SKVLNFYVA	9	Unmodified	_SKVLNFYVA_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.792392	1039.57023	-1.2745	-0.00066374	2.9159	0.0015186	1.6414	0.00085485	521.2929991432703	37.953	0.44773	37.98	37.782	38.23	0.027275	0.1103	0.003354	NaN	56.721	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421370			72857	5969	51098	51179							0.05202930965674568
SKVLPAIK	8	Unmodified	_SKVLPAIK_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.55804443359375	2	428.286746	854.558939	0.2378	0.00010185	0.08447	3.6177E-05	0.32227	0.00013802	428.2866366708483	32.754	0.61223	32.518	32.258	32.87	-0.23666					33	14	3	0	0	0	0.027866	1	2257	2257		35.618	6.4687	1	679320	+		72858	23486	51099	51180	79549	79549					0.12584153662169228
SKVLPAIK	8	Unmodified	_SKVLPAIK_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	428.286746	854.558939	0.62603	0.00026812	-0.38163	-0.00016345	0.2444	0.00010467	428.2864258882954	32.727	0.61538	32.534	32.205	32.821	-0.19261	-0.013652	-0.00034054	NaN	35.618	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554050	+		72859	23486	51099	51180							0.12584153662169228
SKVLPAIK	8	Unmodified	_SKVLPAIK_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	428.286746	854.558939	0.043256	1.8526E-05	0.40764	0.00017459	0.4509	0.00019311	428.28673841924723	32.757	0.64252	32.592	32.315	32.958	-0.16565	0.043883	0.00033553	NaN	35.618	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517340	+		72860	23486	51099	51180							0.12584153662169228
SKVLRAQV	8	Unmodified	_SKVLRAQV_					0	0	0			REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.7847900390625	2	450.784902	899.55525	-0.32184	-0.00014508	-0.96011	-0.0004328	-1.282	-0.00057788	450.7846003923993	28.685	2.4446	28.681	28.33	30.775	-0.0042019					131	59	5	0	0	0	0.5947	1	1711	1711		76.774	4.8967	1	27927000	+		72861	34844	51100	51181	79550	79550					0.10145483888322815
SKVLRAQV	8	Unmodified	_SKVLRAQV_					0	0	0			REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	REV__ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.7843933105469	2	450.784902	899.55525	0.027053	1.2195E-05	-1.1807	-0.00053224	-1.1536	-0.00052005	450.78445917154596	28.47	2.1759	28.551	28.167	30.343	0.080812					127	53	5	0	0	0	0.5947	1	1624	1624		76.774	2.7994	1	29153000	+		72862	34844	51100	51181	79551	79551					0.10145483888322815
SKVLVEVVD	9	Unmodified	_SKVLVEVVD_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3056945800781	2	494.289682	986.564812	-0.63805	-0.00031538	-2.0505	-0.0010136	-2.6886	-0.0013289	494.2887723046638	59.842	1.0371	59.921	59.128	60.165	0.078884					49	27	3	0	0	0	0.024257	1	6659	6659		41.427	0	1	1105000			72863	8197	51101	51182	79552	79552					0.07099207383191697
SKVLVSSGG	9	Unmodified	_SKVLVSSGG_					0	0	0			REV__nc|ENSG00000184716|A6NH21|SERINC4	REV__nc|ENSG00000184716|A6NH21|SERINC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.2391357421875	2	417.239993	832.465432	0.94253	0.00039326	-2.981	-0.0012438	-2.0385	-0.00085055	417.23864032569355	87.794	1.1495	87.813	87.303	88.453	0.018555					48	27	2	0	0	0	0.91321	1	10988	10988		31.53	4.8369	1	2790100	+		72864	37013	51102	51183	79553	79553					0.04249809489112977
SKVMRSWSDL	10	Unmodified	_SKVMRSWSDL_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.9118347167969	3	403.541257	1207.60194	0.24503	9.888E-05	2.8495	0.0011499	3.0945	0.0012488	403.5422925202819	20.119	0.93103	19.895	19.285	20.216	-0.22344					31	13	3	0	0	0	0.03519	1	516	516		24.232	0	1	319380	+		72865	23007	51103	51184	79554	79554					0.006445556572998612
SKVQPQAIL	9	Unmodified	_SKVQPQAIL_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.2452087402344	2	492.297842	982.581131	-0.025626	-1.2616E-05	0.36211	0.00017826	0.33648	0.00016565	492.2978782773373	85.114	0.57664	84.913	84.632	85.209	-0.20087					15	13	2	0	0	0	0.024477	1	10261	10261		14.865	0	1	94651	+		72866	27028	51104	51185	79555	79555					0.08914333339930636
SKVQPQAIL	9	Unmodified	_SKVQPQAIL_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.297842	982.581131	-0.42267	-0.00020808	0.90713	0.00044658	0.48446	0.0002385	492.2975849433862	85.141	0.16418	85.083	85.022	85.186	-0.05761	0.14256	0.0011548	NaN	31.53	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29964	+		72867	27028	51104	51185							0.08914333339930636
SKVQSLELQV	10	Unmodified	_SKVQSLELQV_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.8262329101562	2	565.824421	1129.63429	0.524	0.00029649	3.0697	0.0017369	3.5937	0.0020334	565.8259664119463	100.95	0.74007	100.82	100.63	101.37	-0.12576					37	18	3	0	0	0	1.0275	1	12560	12560		42.338	2.2799	1	338530	+		72868	19848	51105	51186	79556	79556					0.07465666331927423
SKVRKKECQK	10	Unmodified	_SKVRKKECQK_					0	0	0		nc|ENSG00000189007|Q7Z6V5-2|ADAT2;ENSG00000189007|ENST00000237283|ADAT2	nc|ENSG00000189007|Q7Z6V5-2|ADAT2	nc|ENSG00000189007|Q7Z6V5-2|ADAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.56317138671875	3	411.908052	1232.70233	-0.12531	-5.1615E-05	-1.6406	-0.00067579	-1.7659	-0.0007274	411.9068903823278	33.06	0.97231	32.829	32.383	33.356	-0.23107					38	23	3	0	0	0	0.03519	1	2278	2278		29.551	6.9892	1	139330			72869	9779	51106	51187	79557	79557					0.09528212710938533
SKVSLIPEV	9	Unmodified	_SKVSLIPEV_					0	0	0		ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.29248046875	2	486.292225	970.569897	0.64364	0.00031299	-0.43265	-0.00021039	0.21099	0.0001026	486.2916858716044	55.557	0.61007	55.557	55.353	55.963	0					42	16	4	0	0	0	0.48817	1	6155	6155		60.118	5.3419	1	2616800			72870	14949	51107	51188	79558	79558					0.08343511245811897
SKVSNKWFTK	10	Unmodified	_SKVSNKWFTK_					0	0	0			REV__ENST00000478691.5_1_1:23645184-23648146:-|nuORF	REV__ENST00000478691.5_1_1:23645184-23648146:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	612.798583984375	2	612.840405	1223.66626	0.41666	0.00025535	3.0523	0.0018706	3.469	0.0021259	612.8416320106727	58.684	0.28322	58.442	58.3	58.583	-0.24165					8	6	2	0	0	0	0.03519	1	6431	6431		33.922	0	1	515390	+		72871	33375	51108	51189	79559	79559					0.06337078805745477
SKVTLLLSS	9	Unmodified	_SKVTLLLSS_					0	0	0		ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.2648620605469	2	474.292225	946.569897	0.12423	5.8923E-05	-0.35418	-0.00016799	-0.22995	-0.00010906	474.29191841321745	51.983	0.79293	51.799	51.561	52.354	-0.18404					44	20	4	0	0	0	0.024427	1	5383	5383		19.997	9.1312	1	1262000			72872	10820	51109	51190	79560	79560					0.09447511245809892
SKVVSLAEL	9	Unmodified	_SKVVSLAEL_					0	0	0		ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1;NLRP1|p.K583Rfs*14|1|0.34|ENSG00000091592|chr17:5558948-5558948|T/-|frameshift_variant	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	ENST00000571307.1_1_17:5433304-5487319:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2845764160156	2	473.2844	944.554247	0.87359	0.00041345	-1.4401	-0.00068158	-0.56653	-0.00026813	473.2836219251202	83.331	0.51732	83.119	82.876	83.393	-0.21159					24	11	3	0	0	0	0.85329	1	10049	10049		35.618	1.4457	1	530690			72873	1965	51110	51191	79561	79561					0.07975224728750163
SKVWPPAHPL	10	Unmodified	_SKVWPPAHPL_					0	0	0			REV__ENSG00000189127|ENST00000338682|ANKRD34B	REV__ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.7781372070312	2	566.319109	1130.62366	-0.74582	-0.00042237	-3.8155	-0.0021608	-4.5613	-0.0025832	566.3170306420991	46.291	0.40896	46.089	45.855	46.264	-0.20226					22	10	4	0	0	0	0.03519	1	4443	4443		11.511	0	1	327910	+		72874	28099	51111	51192	79562	79562					0.06357728468151436
SKWERVSH	8	Unmodified	_SKWERVSH_					0	0	0		ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	ENSG00000168070|ENST00000301896|MAJIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7088623046875	2	514.76724	1027.51993	-0.50641	-0.00026068	-0.55622	-0.00028632	-1.0626	-0.00054701	514.7667934062933	30.521	0.63349	30.276	29.905	30.538	-0.24415					23	14	2	0	0	0	0.027866	1	1912	1912		23.042	0	1	300690			72875	7782	51112	51193	79563	79563					0.0072682136051298585
SKWFNSQW	8	Unmodified	_SKWFNSQW_					0	0	0			REV__ENST00000243253.7_1_3:127771282-127774410:+|nuORF	REV__ENST00000243253.7_1_3:127771282-127774410:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.3084106445312	2	541.756341	1081.49813	-0.78773	-0.00042676	0.58839	0.00031877	-0.19934	-0.00010799	541.756109503265	80.311	0.53988	80.165	79.828	80.368	-0.146					21	12	2	0	0	0	0.027866	1	9592	9592		24.203	0	1	155120	+		72876	29458	51113	51194	79564	79564					-0.0393598338805532
SKWILDIT	8	Unmodified	_SKWILDIT_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2933349609375	2	488.279118	974.543683	-0.12032	-5.8752E-05	-0.021846	-1.0667E-05	-0.14217	-6.9419E-05	488.2789503563356	89.402	1.0366	89.402	88.978	90.015	0					51	24	3	0	0	0	0.027866	1	11367	11367		15.642	0	1	1101100			72877	1059	51114	51195	79565	79565					0.055392420743373805
SKWILDIT	8	Unmodified	_SKWILDIT_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.29339599609375	2	488.279118	974.543683	0.37475	0.00018298	-0.63894	-0.00031198	-0.26418	-0.000129	488.27862096442703	89.368	2.1758	89.347	87.896	90.072	-0.021645					80	51	3	0	0	0	0.027866	1	11327	11327		34.173	13.226	1	1174600			72878	1059	51114	51195	79566	79566					0.055392420743373805
SKWLEYDVPP	10	Unmodified	_SKWLEYDVPP_					0	0	0			REV__ENST00000446942.5_1_22:24981856-24984799:-|nuORF	REV__ENST00000446942.5_1_22:24981856-24984799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	616.3253784179688	2	617.311146	1232.60774	-0.58361	-0.00036027	-4.1013	-0.0025318	-4.6849	-0.0028921	617.308611194499	57.668	0.37712	57.478	57.222	57.599	-0.19017					13	9	2	0	0	0	0.03519	1	6298	6298		14.137	0	1	152840	+		72879	32638	51115	51196	79567	79567					0.0007397744061563571
SKWYTWTFFVF	11	Unmodified	_SKWYTWTFFVF_					0	0	0			REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15	REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7408447265625	3	504.583451	1510.72852	-0.65065	-0.00032831	-0.99195	-0.00050052	-1.6426	-0.00082883	504.583049516348	24.63	0.26782	24.63	24.474	24.741	0					9	5	2	0	0	0	0.024801	1	1087	1087		23.378	20.989	1	36950	+		72880	21305	51116	51197	79568	79568					-0.006411948459572159
SKYPLRNLQ	9	Unmodified	_SKYPLRNLQ_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.8076782226562	2	559.819473	1117.62439	-0.21923	-0.00012273	-0.29324	-0.00016416	-0.51247	-0.00028689	559.819234771037	57.11	0.83463	56.945	56.71	57.545	-0.16431					63	22	4	0	0	0	0.024374	1	6431	6431		49.442	0	1	2888700			72881	3442	51117	51198	79569	79569					0.07028523117219265
SKYTAKIVN	9	Unmodified	_SKYTAKIVN_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.77203369140625	2	512.295299	1022.57605	-0.27909	-0.00014298	-0.19286	-9.8803E-05	-0.47195	-0.00024178	512.2950421922086	31.382	0.77298	31.14	30.834	31.607	-0.24109					45	19	3	0	0	0	0.024381	1	2138	2138		29.15	0	1	1083100			72882	9743	51118	51199	79570	79570					0.06566029477335178
SLAADYGFPD	10	Unmodified	_SLAADYGFPD_					0	0	0		ENSG00000156453|ENST00000287008|PCDH1;nc|ENSG00000156453|Q08174|PCDH1	ENSG00000156453|ENST00000287008|PCDH1	ENSG00000156453|ENST00000287008|PCDH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2926635742188	2	528.237647	1054.46074	-1.2029	-0.00063541	-2.0408	-0.001078	-3.2437	-0.0017134	528.2382892464897	54.721	0.26505	54.721	54.492	54.757	0					9	7	2	0	0	0	0.03519	1	6008	6008		35.618	8.9254	1	44125			72883	6528	51119	51200	79571	79571					-0.06431119444323485
SLAALQRHDP	10	Unmodified	_SLAALQRHDP_					0	0	0		ENSG00000151065|ENST00000280665|DCP1B;ENST00000541700.5_1_12:2062443-2113597:-|nuORF;ENST00000537725.1_1_12:2070525-2113588:-|nuORF;DCP1B|p.K183Rfs*2|1|0.32|ENSG00000151065|chr12:1955535-1955535|T/-|frameshift_variant	ENSG00000151065|ENST00000280665|DCP1B	ENSG00000151065|ENST00000280665|DCP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.766845703125	2	554.298904	1106.58326	-1.0877	-0.00060293	-2.5101	-0.0013914	-3.5979	-0.0019943	554.7982078600265	53.845	0.86636	53.709	53.496	54.363	-0.13617					56	26	3	0	0	0	0.03519	1	5777	5777		22.58	4.3176	1	532240			72884	6174	51120	51201	79572	79572					0.0342276207775285
SLAALVVHV	9	Unmodified	_SLAALVVHV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7818603515625	2	454.781828	907.549102	0.08009	3.6423E-05	0.13118	5.9656E-05	0.21127	9.608E-05	454.781737519739	66.905	1.0103	66.905	66.672	67.682	0					54	24	4	0	0	0	0.026982	1	7970	7970		143.97	64.035	1	2163600			72885	1818;17643	51121	51202	79573	79573					0.0916296565679886
SLAALVVHV	9	Unmodified	_SLAALVVHV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7817077636719	2	454.781828	907.549102	0.57644	0.00026215	-0.34735	-0.00015797	0.22908	0.00010418	454.781529334389	67.27	1.7223	67.021	66.715	68.437	-0.24839					95	41	3	0	0	0	0.026982	4	7731	7721;7731;7744;7756		143.97	80.996	1	3091800			72886	1818;17643	51121	51202	79574;79575;79576;79577	79575					0.0916296565679886
SLAALVVHV	9	Unmodified	_SLAALVVHV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7818298339844	2	454.781828	907.549102	-0.33734	-0.00015342	0.63932	0.00029075	0.30198	0.00013733	454.7819713321235	67.155	1.3485	66.931	66.742	68.091	-0.22374					73	32	3	0	0	0	0.033883	4	7727	7727;7739;7751;7771		138.48	78.186	1	3285400			72887	1818;17643	51121	51202	79578;79579;79580;79581	79578					0.0916296565679886
SLAALVVHV	9	Unmodified	_SLAALVVHV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.78192138671875	2	454.781828	907.549102	-0.35933	-0.00016342	0.74326	0.00033802	0.38393	0.0001746	454.78199261970826	67.196	1.7003	66.957	66.69	68.39	-0.23814					87	41	3	0	0	0	0.026982	4	7735	7710;7724;7735;7748		143.97	80.996	1	3332100			72888	1818;17643	51121	51202	79582;79583;79584;79585	79584					0.0916296565679886
SLAALVVHV	9	Unmodified	_SLAALVVHV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.781828	907.549102	-0.09627	-4.3782E-05	0.32906	0.00014965	0.23279	0.00010587	454.7818065633837	67.267	1.1165	66.979	66.707	67.823	-0.28834	0.0050434	6.8443E-05	NaN	143.97	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1162600			72889	1818;17643	51121	51202							0.0916296565679886
SLAALVVHV	9	Unmodified	_SLAALVVHV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	454.781828	907.549102	0.10312	4.6897E-05	0.067119	3.0525E-05	0.17024	7.7422E-05	454.78175418530253	67.026	1.0545	67.05	66.769	67.824	0.023911	0.076187	-0.00016981	NaN	143.97	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1347200			72890	1818;17643	51121	51202							0.0916296565679886
SLAANTFTI	9	Unmodified	_SLAANTFTI_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.2546081542969	2	469.2531	936.491647	0.70242	0.00032961	-0.32638	-0.00015316	0.37604	0.00017646	469.25276959875396	71.517	0.8716	71.517	71.145	72.017	0					52	22	5	0	0	0	0.03849	1	8670	8670		134.81	52.57	1	1422400			72891	5836	51122	51203	79586	79586					0.0208607866057946
SLAANTFTI	9	Unmodified	_SLAANTFTI_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.25469970703125	2	469.2531	936.491647	0.72486	0.00034014	-0.55971	-0.00026265	0.16515	7.7497E-05	469.25273587037185	71.845	0.98016	71.556	71.234	72.214	-0.28858					49	25	3	0	0	0	0.020687	1	8681	8681		148.99	52.796	1	1213500			72892	5836	51122	51203	79587	79587					0.0208607866057946
SLAANTFTI	9	Unmodified	_SLAANTFTI_					0	0	0		nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000145741|P20290-2|BTF3	nc|ENSG00000145741|P20290-2|BTF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.2540588378906	2	469.2531	936.491647	0.8227	0.00038606	-0.55959	-0.00026259	0.26312	0.00012347	469.25268648508023	71.573	0.81632	71.584	71.279	72.095	0.010735					43	21	3	0	0	0	0.03201	2	8598	8598;8609		139.97	52.216	1	1295100			72893	5836	51122	51203	79588;79589	79588					0.0208607866057946
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000485835.1_1_17:38151035-38151804:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7803039550781	2	479.782025	957.549496	2.0054	0.00096215	-1.7619	-0.00084532	0.24349	0.00011682	479.7810252968986	63.832	0.97932	63.832	63.558	64.538	0					49	26	3	0	0	0	0.03201	3	7502	7491;7502;7515		139.97	33.254	1	4150900			72894	2889	51123	51204	79590;79591;79592	79591					0.06902340586009359
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000485835.1_1_17:38151035-38151804:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7805480957031	2	479.782025	957.549496	0.2568	0.00012321	-0.21577	-0.00010352	0.041024	1.9682E-05	479.7817350966738	64.076	1.2522	63.824	63.372	64.624	-0.25141					57	33	3	0	0	0	0.03201	2	7511	7500;7511		139.97	43.78	1	3975800			72895	2889	51123	51204	79593;79594	79594					0.06902340586009359
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000485835.1_1_17:38151035-38151804:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7788391113281	2	479.782025	957.549496	1.7241	0.0008272	-1.8313	-0.00087863	-0.1072	-5.1432E-05	479.78094276700836	63.824	1.0481	63.869	63.438	64.486	0.045502					50	28	3	0	0	0	0.03201	1	7417	7417		139.97	41.341	1	3514400			72896	2889	51123	51204	79595	79595					0.06902340586009359
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.2640380859375	2	552.264393	1102.51423	-0.20773	-0.00011472	-0.027167	-1.5003E-05	-0.23489	-0.00012972	552.2643086034907	61.573	0.86178	61.573	61.255	62.117	0					71	22	5	0	0	0	3.127E-06	4	7137	7112;7125;7137;7151		291.73	138.7	1	6025700			72897	5814	51124	51205	79596;79597;79598;79599	79598					-0.032923667324666894
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.2642822265625	2	552.264393	1102.51423	-0.063543	-3.5093E-05	-0.31913	-0.00017624	-0.38267	-0.00021133	552.2641375773442	61.806	0.85845	61.58	61.261	62.119	-0.22663					69	22	4	0	0	0	4.6765E-06	4	7126	7115;7126;7138;7153		247.58	114.09	1	5548500			72898	5814	51124	51205	79600;79601;79602;79603	79601					-0.032923667324666894
SLADLQNDEV	10	Unmodified	_SLADLQNDEV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.2643432617188	2	552.264393	1102.51423	-0.20955	-0.00011573	-0.20875	-0.00011528	-0.4183	-0.00023101	552.2642415239595	61.495	0.78621	61.567	61.239	62.026	0.071125					62	20	4	0	0	0	2.4321E-06	4	7042	7020;7030;7042;7055		295.04	137.71	1	6194300			72899	5814	51124	51205	79604;79605;79606;79607	79606					-0.032923667324666894
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2799072265625	2	528.279649	1054.54475	-0.9567	-0.0005054	0.28654	0.00015138	-0.67015	-0.00035403	528.2797315631908	68.841	1.2277	68.841	68.482	69.71	0					76	31	4	0	0	0	0.03201	3	8273	8262;8273;8286		139.97	49.601	1	4496800			72900	9885	51125	51206	79608;79609;79610	79609					0.0196545644323578
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2797241210938	2	528.279649	1054.54475	0.035527	1.8768E-05	-0.54941	-0.00029024	-0.51388	-0.00027147	528.2792473589598	69.149	1.1168	68.856	68.556	69.673	-0.29276					70	28	4	0	0	0	0.053401	3	8288	8276;8288;8299		127.46	61.032	1	3888800			72901	9885	51125	51206	79611;79612;79613	79612					0.0196545644323578
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.279541015625	2	528.279649	1054.54475	-0.085623	-4.5233E-05	-0.30406	-0.00016063	-0.38968	-0.00020586	528.2793457735149	68.94	1.1848	68.955	68.569	69.754	0.015129					67	30	3	0	0	0	0.03201	3	8198	8187;8198;8209		139.97	38.759	1	3941000			72902	9885	51125	51206	79614;79615;79616	79615					0.0196545644323578
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2802124023438	2	528.279649	1054.54475	-0.97716	-0.00051621	0.95909	0.00050667	-0.018067	-9.5444E-06	528.2800354822513	69.187	1.2422	68.925	68.341	69.584	-0.26165					77	29	4	0	0	0	0.077175	4	8013	8002;8013;8025;8040		118.74	30.989	1	2280900			72903	9885	51125	51206	79617;79618;79619;79620	79618					0.0196545644323578
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2803344726562	2	528.279649	1054.54475	-0.023091	-1.2199E-05	-0.26252	-0.00013868	-0.28561	-0.00015088	528.2794144403764	69.137	1.1009	68.895	68.348	69.449	-0.24277					72	26	4	0	0	0	0.03201	3	8004	8004;8015;8028		139.97	61.032	1	2726500			72904	9885	51125	51206	79621;79622;79623	79621					0.0196545644323578
SLADLYFRA	9	Unmodified	_SLADLYFRA_					0	0	0		nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	nc|ENSG00000196510|Q9UJX3-2|ANAPC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2801513671875	2	528.279649	1054.54475	-0.094807	-5.0085E-05	-0.22527	-0.00011901	-0.32008	-0.00016909	528.2793983872244	69.096	1.2705	68.865	68.195	69.466	-0.23048					78	30	4	0	0	0	0.077175	3	7994	7994;8003;8016		118.74	41.969	1	2844800			72905	9885	51125	51206	79624;79625;79626	79624					0.0196545644323578
SLADSLYNL	9	Unmodified	_SLADSLYNL_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2;CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2558898925781	2	498.25584	994.497126	-0.15635	-7.7901E-05	-0.029448	-1.4673E-05	-0.1858	-9.2574E-05	498.255727584256	80.2	0.79941	80.2	79.786	80.585	0					38	18	3	0	0	0	0.16468	2	9966	9954;9966		96.19	16.739	1	645120			72906	18205	51126	51207	79627;79628	79628					-0.0003424254761057455
SLADSLYNL	9	Unmodified	_SLADSLYNL_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2;CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.25584	994.497126	-1.0361	-0.00051623	1.2749	0.00063525	0.23887	0.00011902	498.256200316116	80.392	0.75571	80.24	79.884	80.639	-0.15168	0.080852	0.0011263	NaN	96.19	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539040			72907	18205	51126	51207							-0.0003424254761057455
SLADSLYNL	9	Unmodified	_SLADSLYNL_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2;CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.25584	994.497126	0.1223	6.0938E-05	-0.065711	-3.2741E-05	0.056592	2.8197E-05	498.25569057279375	80.392	0.6627	80.155	79.747	80.409	-0.23784	-0.004964	-0.00020972	NaN	96.19	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232940			72908	18205	51126	51207							-0.0003424254761057455
SLADSLYNL	9	Unmodified	_SLADSLYNL_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2;CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.25584	994.497126	0.25467	0.00012689	-0.18099	-9.0179E-05	0.073678	3.671E-05	498.25566433795495	80.332	0.71268	80.126	79.672	80.385	-0.20632	-0.033379	-0.0003246	NaN	96.19	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205130			72909	18205	51126	51207							-0.0003424254761057455
SLADSLYNL	9	Unmodified	_SLADSLYNL_					0	0	0		nc|ENSG00000118200|Q08AD1|CAMSAP2;CAMSAP2|p.M1437*|1|0.23|ENSG00000118200|chr1:200857892-200857892|A/-|frameshift_variant;nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1|CAMSAP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.25584	994.497126	-0.22174	-0.00011048	-0.0084135	-4.1921E-06	-0.23015	-0.00011467	498.255625602559	80.222	0.70786	80.076	79.743	80.451	-0.146	-0.083264	-0.00015262	NaN	96.19	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212840			72910	18205	51126	51207							-0.0003424254761057455
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7373046875	2	462.737283	923.460012	-0.096107	-4.4472E-05	0.087302	4.0398E-05	-0.008805	-4.0744E-06	462.7372357969174	72.691	1.2317	72.691	72.131	73.362	0					56	30	3	0	0	0	0.13494	3	8861	8849;8861;8879		102.77	11.326	1	1390600			72911	7574	51127	51208	79629;79630;79631	79630					-0.004779140934033421
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7373046875	2	462.737283	923.460012	0.38689	0.00017903	-0.38203	-0.00017678	0.0048549	2.2465E-06	462.73703389047	73.051	0.96907	72.77	72.262	73.231	-0.28124					36	23	2	0	0	0	0.06122	3	8877	8866;8877;8890		124.59	18.179	1	1734800			72912	7574	51127	51208	79632;79633;79634	79633					-0.004779140934033421
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MSMS	OPSCC_39_ClassI_Rep-3	3	462.7373962402344	2	462.737283	923.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.72	1	72.729	72.229	73.229	0.0096512								0	0	0	0.026904	1	8781	8781		120.62	26.615	1				72913	7574	51127	51208	79635	79635					-0.004779140934033421
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MSMS	OPSCC_39_ClassI_Rep-3	3	462.7373962402344	2	462.737283	923.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.815	1	72.825	72.325	73.325	0.0096512								0	0	0	0.25637	1	8795	8795		71.296	7.9894	1				72914	7574	51127	51208	79636	79636					-0.004779140934033421
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MSMS	OPSCC_39_ClassI_Rep-3	3	462.7375793457031	2	462.737283	923.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.906	1	72.916	72.416	73.416	0.0096512								0	0	0	0.56622	1	8808	8808		44.117	6.9577	1				72915	7574	51127	51208	79637	79637					-0.004779140934033421
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MSMS	OPSCC_40_ClassI_Rep-3	6	462.73724365234375	2	462.737283	923.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.966	1	72.768	72.268	73.268	-0.19811								0	0	0	0.45465	1	8557	8557		57.811	0	1				72916	7574	51127	51208	79638	79638					-0.004779140934033421
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MSMS	OPSCC_40_ClassI_Rep-3	6	462.7373352050781	2	462.737283	923.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.049	1	72.85	72.35	73.35	-0.19811								0	0	0	0.44038	1	8569	8569		58.782	7.4465	1				72917	7574	51127	51208	79639	79639					-0.004779140934033421
SLADYITAA	9	Unmodified	_SLADYITAA_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;MCM7|p.V586M|1|0.14|ENSG00000166508|chr7:100094265-100094265|C/T|missense_variant	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.737283	923.460012	-0.21046	-9.7389E-05	0.02222	1.0282E-05	-0.18824	-8.7107E-05	462.73725669102885	73.123	0.5483	72.846	72.626	73.174	-0.2769	0.076629	0.00013713	NaN	124.59	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307880			72918	7574	51127	51208							-0.004779140934033421
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.26611328125	2	497.266207	992.517862	0.52257	0.00025985	-0.67364	-0.00033498	-0.15107	-7.5122E-05	497.26585881439746	87.257	1.3962	87.257	86.816	88.212	0					102	33	5	0	0	0	0.0085723	5	10966	10956;10966;10978;10989;11010		251.33	74.924	1	8124500			72919	9638	51128	51209	79640;79641;79642;79643;79644	79641					0.02130347832053303
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2663269042969	2	497.266207	992.517862	0.24444	0.00012155	-0.42948	-0.00021356	-0.18504	-9.2014E-05	497.2659933212713	87.207	1.5646	87.172	86.817	88.382	-0.035362					109	37	5	0	0	0	0.0084586	5	10923	10914;10923;10943;10954;10969		254.98	73.22	1	8629300			72920	9638	51128	51209	79645;79646;79647;79648;79649	79646					0.02130347832053303
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2660217285156	2	497.266207	992.517862	0.83339	0.00041442	-1.0709	-0.00053253	-0.23752	-0.00011811	497.2656767853042	87.22	1.8233	87.241	86.719	88.543	0.021263					124	43	4	0	0	0	0.0085723	5	10883	10873;10883;10900;10913;10927		251.33	59.709	1	7394900			72921	9638	51128	51209	79650;79651;79652;79653;79654	79651					0.02130347832053303
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.26605224609375	2	497.266207	992.517862	-0.22804	-0.00011339	1.0909	0.00054247	0.86288	0.00042908	497.26624842109146	87.243	0.87595	87.065	86.741	87.616	-0.17875					54	20	3	0	0	0	0.016169	2	10595	10595;10613		219.56	57.666	1	1619400			72922	9638	51128	51209	79655;79656	79655					0.02130347832053303
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2662048339844	2	497.266207	992.517862	0.53901	0.00026803	0.39301	0.00019543	0.93201	0.00046346	497.26585939720593	87.125	1.4327	86.988	86.327	87.76	-0.13613					72	33	3	0	0	0	0.017348	2	10615	10597;10615		204.62	56.582	1	2011500			72923	9638	51128	51209	79657;79658	79658					0.02130347832053303
SLAEFVQSL	9	Unmodified	_SLAEFVQSL_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2656555175781	2	497.266207	992.517862	-0.17176	-8.5411E-05	0.81382	0.00040468	0.64206	0.00031927	497.2661225330176	87.221	0.96307	87.084	86.704	87.667	-0.13734					60	22	4	0	0	0	0.014738	3	10611	10582;10594;10611		219.56	57.666	1	1581800			72924	9638	51128	51209	79659;79660;79661	79661					0.02130347832053303
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2716064453125	2	473.271824	944.529095	0.21321	0.00010091	-1.0899	-0.00051583	-0.8767	-0.00041492	473.2713077006589	48.143	0.87573	48.143	47.779	48.654	0					92	25	5	0	0	0	0.013924	4	4880	4880;4892;4903;4916		167.23	51.735	1	23068000			72925	3106	51129	51210	79662;79663;79664;79665	79662					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2711181640625	2	473.271824	944.529095	-0.11947	-5.6544E-05	-0.79979	-0.00037852	-0.91926	-0.00043506	473.27144397177625	48.298	0.88612	48.145	47.795	48.681	-0.15301					90	25	7	0	0	0	0.016542	4	4880	4880;4891;4903;4915		154.12	49.372	1	23081000			72926	3106	51129	51210	79666;79667;79668;79669	79666					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.27130126953125	2	473.271824	944.529095	-0.10904	-5.1607E-05	-1.0035	-0.00047493	-1.1125	-0.00052653	473.2712275690663	48.005	1.0578	48.072	47.777	48.835	0.066795					85	29	5	0	0	0	0.013924	4	4810	4799;4810;4823;4836		167.23	51.735	1	24242000			72927	3106	51129	51210	79670;79671;79672;79673	79671					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2716064453125	2	473.271824	944.529095	-0.287	-0.00013583	-0.61628	-0.00029167	-0.90328	-0.0004275	473.2715532589924	48.081	1.2907	47.984	47.667	48.958	-0.097553					95	34	4	0	0	0	0.015713	5	4744	4734;4744;4756;4768;4783		195.06	55.093	1	16567000			72928	3106	51129	51210	79674;79675;79676;79677;79678	79675					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.27178955078125	2	473.271824	944.529095	-0.90815	-0.0004298	0.012245	5.7954E-06	-0.89591	-0.00042401	473.2718412900857	48.377	1.0199	48.101	47.775	48.795	-0.27598					84	27	5	0	0	0	0.013924	5	4763	4763;4773;4785;4798;4813		167.23	55.489	1	15138000			72929	3106	51129	51210	79679;79680;79681;79682;79683	79679					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.271484375	2	473.271824	944.529095	-0.040122	-1.8989E-05	-0.79958	-0.00037842	-0.8397	-0.00039741	473.27146545304214	48.222	1.3985	48.035	47.673	49.071	-0.18684					91	37	4	0	0	0	0.013924	5	4761	4739;4750;4761;4774;4788		167.23	49.372	1	16128000			72930	3106	51129	51210	79684;79685;79686;79687;79688	79686					0.05461169926184084
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.287353515625	2	511.287474	1020.5604	0.26994	0.00013802	-0.52794	-0.00026993	-0.258	-0.00013191	511.2869592431138	58.611	1.4254	58.611	58.056	59.482	0					135	38	6	0	0	0	0.094442	5	6655	6632;6644;6655;6668;6682		112.41	30.233	1	16745000			72931	4956	51130	51211	79689;79690;79691;79692;79693	79691					0.05093742960275449
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.287109375	2	511.287474	1020.5604	0.76453	0.00039089	-1.0481	-0.0005359	-0.28361	-0.000145	511.28673695207925	58.835	1.2376	58.648	58.275	59.513	-0.18705					124	33	6	0	0	0	0.043667	4	6652	6631;6640;6652;6664		131.03	34.841	1	15562000			72932	4956	51130	51211	79694;79695;79696;79697	79696					0.05093742960275449
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2871398925781	2	511.287474	1020.5604	0.10245	5.238E-05	-0.31199	-0.00015952	-0.20955	-0.00010714	511.28704283694316	58.447	1.4547	58.538	58.015	59.469	0.091217					137	39	6	0	0	0	0.077175	5	6548	6527;6537;6548;6560;6576		118.74	28.44	1	16585000			72933	4956	51130	51211	79698;79699;79700;79701;79702	79700					0.05093742960275449
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7895202636719	2	486.78985	971.565146	-0.77397	-0.00037676	0.90984	0.0004429	0.13587	6.614E-05	486.79024300914745	54.842	0.7453	54.94	54.626	55.371	0.098015					49	20	3	0	0	0	0.062622	1	5936	5936		124.08	17.073	1	8102700			72934	6019	51131	51212	79703	79703					0.07822627103041668
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.78985	971.565146	0.24392	0.00011874	0.36816	0.00017922	0.61208	0.00029796	486.7900423818163	55.132	0.66882	55.132	54.831	55.5	0	0.084612	-0.00032411	NaN	124.08	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9510800			72935	6019	51131	51212							0.07822627103041668
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	ENSG00000148331|ENST00000277458|ASB6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.78985	971.565146	-0.21763	-0.00010594	0.80538	0.00039205	0.58775	0.00028611	486.7902260323938	55.221	0.69863	55.071	54.711	55.409	-0.15036	0.02327	0.00010156	NaN	124.08	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9132700			72936	6019	51131	51212							0.07822627103041668
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-1	1	469.7690734863281	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.701	1	64.701	64.201	65.201	0								0	0	0	0.014319	1	7629	7629		152.63	38.048	1				72937	1687	51132	51213	79704	79704					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-1	1	469.7691955566406	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.757	1	64.757	64.257	65.257	0								0	0	0	0.014252	1	7638	7638		157.99	43.403	1				72938	1687	51132	51213	79705	79705					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-1	1	469.7688903808594	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.831	1	64.831	64.331	65.331	0								0	0	0	0.014252	1	7650	7650		157.99	19.51	1				72939	1687	51132	51213	79706	79706					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-2	2	469.768798828125	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.942	1	64.68	64.18	65.18	-0.2626								0	0	0	0.01444	1	7632	7632		143.02	19.031	1				72940	1687	51132	51213	79707	79707					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-2	2	469.7684326171875	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.009	1	64.747	64.247	65.247	-0.2626								0	0	0	0.0019647	1	7643	7643		183.89	59.906	1				72941	1687	51132	51213	79708	79708					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-2	2	469.768798828125	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.085	1	64.823	64.323	65.323	-0.2626								0	0	0	0.014252	1	7655	7655		157.99	43.403	1				72942	1687	51132	51213	79709	79709					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-2	2	469.7689514160156	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.18	1	64.917	64.417	65.417	-0.2626								0	0	0	0.021377	1	7670	7670		128.86	34.855	1				72943	1687	51132	51213	79710	79710					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-3	3	469.7685241699219	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.664	1	64.71	64.21	65.21	0.045502								0	0	0	0.0095838	1	7542	7542		167.82	53.239	1				72944	1687	51132	51213	79711	79711					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-3	3	469.7689514160156	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.731	1	64.775	64.275	65.275	0.043915								0	0	0	0.014252	1	7553	7553		157.99	43.403	1				72945	1687	51132	51213	79712	79712					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-3	3	469.76934814453125	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.806	1	64.843	64.343	65.343	0.037384								0	0	0	0.014252	1	7565	7565		157.99	19.51	1				72946	1687	51132	51213	79713	79713					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_39_ClassI_Rep-3	3	469.7691650390625	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.897	1	64.935	64.435	65.435	0.037384								0	0	0	0.01444	1	7580	7580		143.02	4.5398	1				72947	1687	51132	51213	79714	79714					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	469.7687683105469	2	469.768917	937.523281	-0.34184	-0.00016059	-0.16513	-7.7575E-05	-0.50698	-0.00023816	469.76881343898805	64.982	1.4221	64.747	64.374	65.796	-0.2345					52	34	2	0	0	0	0.015769	3	7400	7400;7413;7424		157.99	43.403	1	5258400			72948	1687	51132	51213	79715;79716;79717	79715					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_40_ClassI_Rep-2	5	469.7685241699219	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.933	1	64.73	64.23	65.23	-0.20254								0	0	0	0.01444	1	7403	7403		143.02	41.808	1				72949	1687	51132	51213	79718	79718					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_40_ClassI_Rep-2	5	469.7689514160156	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.014	1	64.811	64.311	65.311	-0.20254								0	0	0	0.0011865	1	7415	7415		190.71	61.894	1				72950	1687	51132	51213	79719	79719					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_40_ClassI_Rep-2	5	469.768798828125	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.095	1	64.893	64.393	65.393	-0.20254								0	0	0	0.01444	1	7427	7427		143.02	41.808	1				72951	1687	51132	51213	79720	79720					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MSMS	OPSCC_40_ClassI_Rep-2	5	469.7692565917969	2	469.768917	937.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.191	1	64.989	64.489	65.489	-0.20254								0	0	0	0.027618	1	7441	7441		119.56	48.179	1				72952	1687	51132	51213	79721	79721					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.768798828125	2	469.768917	937.523281	-0.8091	-0.00038009	-0.031602	-1.4846E-05	-0.8407	-0.00039494	469.7689373433645	65.014	1.4544	64.758	64.426	65.88	-0.25563					54	35	2	0	0	0	0.013018	2	7409	7396;7409		173.85	59.263	1	4323300			72953	1687	51132	51213	79722;79723	79723					0.0520207141452147
SLAELVPGV	9	Unmodified	_SLAELVPGV_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.7579345703125	2	442.758018	883.501483	-0.10801	-4.782E-05	0.38776	0.00017169	0.27976	0.00012387	442.7580977504714	79.613	0.82677	79.632	79.192	80.018	0.018677					33	19	2	0	0	0	0.17455	1	9805	9805		94.006	3.2298	1	474840			72954	9632	51133	51214	79724	79724					0.05507266665949828
SLAELVPGV	9	Unmodified	_SLAELVPGV_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.758018	883.501483	-0.18872	-8.3557E-05	0.24849	0.00011002	0.059767	2.6462E-05	442.7581081669159	79.551	0.71124	79.551	79.283	79.994	0	0.030049	-6.6396E-05	NaN	94.006	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452720			72955	9632	51133	51214							0.05507266665949828
SLAELVPGV	9	Unmodified	_SLAELVPGV_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.758018	883.501483	-0.91345	-0.00040444	0.89884	0.00039797	-0.01461	-6.4685E-06	442.75839840874437	79.762	0.75406	79.589	79.233	79.987	-0.17226	0.068038	0.0005095	NaN	94.006	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410090			72956	9632	51133	51214							0.05507266665949828
SLAELVPGV	9	Unmodified	_SLAELVPGV_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	442.758018	883.501483	0.41555	0.00018399	-0.92941	-0.0004115	-0.51386	-0.00022751	442.757955541361	79.672	0.54298	79.426	79.195	79.738	-0.2465	-0.095442	-0.0011094	NaN	94.006	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79647			72957	9632	51133	51214							0.05507266665949828
SLAELVPGV	9	Unmodified	_SLAELVPGV_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.758018	883.501483	0.16186	7.1664E-05	0.029301	1.2973E-05	0.19116	8.4637E-05	442.75791964913475	79.666	0.6277	79.447	79.202	79.83	-0.21923	-0.074597	-0.00026049	NaN	94.006	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79240			72958	9632	51133	51214							0.05507266665949828
SLAELVPGV	9	Unmodified	_SLAELVPGV_					0	0	0		ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000565298.5_1_16:1576517-1634259:-|nuORF	ENSG00000187535|ENST00000426508|IFT140	ENSG00000187535|ENST00000426508|IFT140	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.758018	883.501483	0.45027	0.00019936	-0.71499	-0.00031657	-0.26472	-0.00011721	442.75769276343556	79.633	0.54356	79.482	79.195	79.738	-0.15051	-0.038873	-0.00091957	NaN	94.006	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82299			72959	9632	51133	51214							0.05507266665949828
SLAERVDRL	9	Unmodified	_SLAERVDRL_					0	0	0		WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.8013305664062	2	529.80128	1057.58801	-0.48766	-0.00025836	0.30812	0.00016324	-0.17955	-9.5124E-05	529.8014420218568	40.742	1.0802	40.742	40.212	41.292	0					70	30	4	0	0	0	0.30449	1	3633	3633		75.043	3.1658	1	8146100			72960	6653	51134	51215	79725	79725					0.06151646220519069
SLAERVDRL	9	Unmodified	_SLAERVDRL_					0	0	0		WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.8008422851562	2	529.80128	1057.58801	-0.32685	-0.00017316	-0.073786	-3.9092E-05	-0.40063	-0.00021226	529.8012558868443	40.928	1.0367	40.951	40.527	41.564	0.023006					66	29	3	0	0	0	0.16638	2	3582	3582;3606		95.815	21.56	1	8055600			72961	6653	51134	51215	79726;79727	79726					0.06151646220519069
SLAERVDRL	9	Unmodified	_SLAERVDRL_					0	0	0		WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.80128	1057.58801	-0.61379	-0.00032519	-0.72243	-0.00038275	-1.3362	-0.00070793	529.8014030132612	40.851	0.95422	40.716	40.418	41.372	-0.13553	-0.07885	-0.00074708	NaN	95.815	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384130			72962	6653	51134	51215							0.06151646220519069
SLAERVDRL	9	Unmodified	_SLAERVDRL_					0	0	0		WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant;nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	WASF2|p.E122Kfs*51|1|0.17|ENSG00000158195|chr1:27418324-27418324|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.80128	1057.58801	-0.96387	-0.00051066	0.057379	3.0399E-05	-0.90649	-0.00048026	529.8015551799857	41.08	0.6377	40.85	40.52	41.157	-0.23029	0.05505	7.9209E-05	NaN	95.815	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356810			72963	6653	51134	51215							0.06151646220519069
SLAEVGPLI	9	Unmodified	_SLAEVGPLI_					0	0	0			REV__ENSG00000170950|ENST00000304801|PGK2	REV__ENSG00000170950|ENST00000304801|PGK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.23297119140625	2	449.765843	897.517133	0.16715	7.5179E-05	-4.0358	-0.0018152	-3.8686	-0.00174	449.76388425889417	26.03	0.40754	26.111	25.924	26.331	0.081293					16	9	2	0	0	0	0.024354	1	1213	1213		38.806	0	1	110920	+		72964	26522	51135	51216	79728	79728					0.06427553183004875
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.78759765625	2	500.787307	999.560061	0.36191	0.00018124	1.0974	0.00054958	1.4593	0.00073082	500.7873508112379	87.694	1.4458	87.694	87.109	88.555	0					86	34	4	0	0	0	0.03666	2	11045	11045;11057		136.27	19.365	1	3049400			72965	1079	51136	51217	79729;79730	79729					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7873840332031	2	500.787307	999.560061	0.31839	0.00015945	1.1762	0.00058901	1.4946	0.00074846	500.7873335854367	87.665	1.5281	87.629	87.068	88.596	-0.035362					84	36	4	0	0	0	0.015841	2	10997	10997;11008		195.81	29.031	1	3114400			72966	1079	51136	51217	79731;79732	79731					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7871398925781	2	500.787307	999.560061	0.91517	0.0004583	0.6523	0.00032667	1.5675	0.00078497	500.7870622006358	87.728	1.9609	87.747	87.092	89.052	0.018555					99	46	4	0	0	0	0.020687	2	10956	10956;10968		148.99	30.244	1	3025000			72967	1079	51136	51217	79733;79734	79733					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.28961181640625	2	500.787307	999.560061	-0.15409	-7.7169E-05	1.4586	0.00073047	1.3046	0.0006533	500.78729431251725	87.739	1.0094	87.56	87.238	88.247	-0.17875					51	24	3	0	0	0	0.027092	4	10665	10655;10665;10677;10690		143.89	21.711	1	2531900			72968	1079	51136	51217	79735;79736;79737;79738	79736					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2898864746094	2	500.787307	999.560061	0.30224	0.00015136	1.1575	0.00057965	1.4597	0.000731	501.2897484881283	87.686	0.92816	87.55	87.22	88.148	-0.13613					52	22	3	0	0	0	0.1158	4	10651	10651;10679;10692;10698		107.01	10.903	1	2153400			72969	1079	51136	51217	79739;79740;79741;79742	79739					0.06026323240439524
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.28997802734375	2	500.787307	999.560061	-0.28066	-0.00014055	1.8829	0.00094295	1.6023	0.0008024	501.2900535241059	87.727	1.1522	87.589	87.163	88.315	-0.13734					72	27	4	0	0	0	0.094442	3	10666	10640;10666;10678		112.41	13.782	1	2622700			72970	1079	51136	51217	79743;79744;79745	79744					0.06026323240439524
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7611999511719	2	487.761289	973.508025	0.87643	0.00042749	-1.0967	-0.00053495	-0.22032	-0.00010746	487.7607111216329	59.239	1.0205	59.239	58.86	59.88	0					66	27	3	0	0	0	0.016542	2	6772	6759;6772		154.12	24.393	1	7920300			72971	4174	51137	51218	79746;79747	79747					0.020211598266882902
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7613525390625	2	487.761289	973.508025	1.0772	0.00052542	-1.2774	-0.00062307	-0.20021	-9.7656E-05	487.7606279336297	59.499	0.97821	59.299	58.923	59.901	-0.20016					65	26	3	0	0	0	0.030064	2	6755	6755;6781		141.52	11.838	1	7366000			72972	4174	51137	51218	79748;79749	79748					0.020211598266882902
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.76129150390625	2	487.761289	973.508025	-0.089982	-4.389E-05	-0.19013	-9.2738E-05	-0.28011	-0.00013663	487.76116622147674	59.1	1.0938	59.186	58.849	59.943	0.085682					66	29	3	0	0	0	0.020687	3	6658	6658;6671;6684		148.99	19.304	1	7612000			72973	4174	51137	51218	79750;79751;79752	79750					0.020211598266882902
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.761289	973.508025	0.68895	0.00033604	-0.623	-0.00030388	0.065943	3.2164E-05	487.7608718627169	59.562	0.67407	59.365	59.091	59.765	-0.19742	0.052617	0.00027758	NaN	154.12	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	640520			72974	4174	51137	51218							0.020211598266882902
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.761289	973.508025	0.6471	0.00031563	-0.65229	-0.00031816	-0.0051835	-2.5283E-06	487.76087327247996	59.56	0.6905	59.384	59.158	59.849	-0.1761	0.071454	0.00024902	NaN	154.12	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	741160			72975	4174	51137	51218							0.020211598266882902
SLAEVNTQL	9	Unmodified	_SLAEVNTQL_					0	0	0		ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF	ENSG00000126001|ENST00000397527|CEP250	ENSG00000126001|ENST00000397527|CEP250	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.761289	973.508025	0.39617	0.00019324	-0.39069	-0.00019056	0.0054837	2.6747E-06	487.76095490503883	59.649	0.66959	59.401	59.13	59.8	-0.24841	0.088897	0.00050421	NaN	154.12	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620100			72976	4174	51137	51218							0.020211598266882902
SLAFLGLIP	9	Unmodified	_SLAFLGLIP_					0	0	0		ENST00000568784.6_1_16:46722452-46722602:-|nuORF	ENST00000568784.6_1_16:46722452-46722602:-|nuORF	ENST00000568784.6_1_16:46722452-46722602:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.8133544921875	2	465.786579	929.558604	-0.61897	-0.00028831	-3.5166	-0.001638	-4.1356	-0.0019263	465.78484176623795	38.272	0.73182	38.092	37.844	38.576	-0.17929					43	20	3	0	0	0	0.024354	1	3138	3138		47.916	0	1	1257100			72977	16993	51138	51219	79753	79753					0.09100733942329953
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.80712890625	2	557.808771	1113.60299	0.89618	0.0004999	-0.43188	-0.00024091	0.46429	0.00025899	557.8083086726887	73.779	1.008	73.779	73.585	74.593	0					40	23	3	0	0	0	0.00042955	2	9032	9019;9032		155.58	46.106	1	1485700			72978	872	51139	51220	79754;79755	79755					0.05073093297869491
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.80908203125	2	557.808771	1113.60299	-0.27809	-0.00015512	0.31517	0.0001758	0.03708	2.0683E-05	557.8087546068974	73.806	0.79811	73.815	73.64	74.439	0.0096512					33	18	2	0	0	0	0.016619	1	8949	8949		131.62	30.364	1	1411600			72979	872	51139	51220	79756	79756					0.05073093297869491
SLAGDVALQQL	11	Unmodified	_SLAGDVALQQL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.808771	1113.60299	-0.15626	-8.7164E-05	0.33286	0.00018567	0.1766	9.851E-05	557.8087263642861	74.161	0.86898	73.902	73.623	74.492	-0.25887	0.07005	0.00035018	NaN	155.58	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254200			72980	872	51139	51220							0.05073093297869491
SLAGNTYQL	9	Unmodified	_SLAGNTYQL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.74761962890625	2	483.748182	965.481811	0.81225	0.00039292	0.41793	0.00020217	1.2302	0.0005951	483.74789717651197	58.852	0.94584	58.665	58.348	59.294	-0.18705					63	25	4	0	0	0	0.56934	1	6655	6655		54.776	5.2403	1	2334100			72981	2184	51140	51221	79757	79757					-0.002311093448156498
SLAGNTYQL	9	Unmodified	_SLAGNTYQL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.747802734375	2	483.748182	965.481811	-0.13174	-6.3731E-05	0.31976	0.00015468	0.18801	9.0952E-05	483.7481715744171	58.868	0.95822	58.68	58.39	59.348	-0.18795					60	23	4	0	0	0	0.013065	3	6477	6477;6486;6500		190.26	37.791	1	4007600			72982	2184	51140	51221	79758;79759;79760	79758					-0.002311093448156498
SLAGNTYQL	9	Unmodified	_SLAGNTYQL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.7480773925781	2	483.748182	965.481811	0.19034	9.2077E-05	-0.084026	-4.0647E-05	0.10632	5.143E-05	483.74797116862845	58.826	1.0082	58.645	58.308	59.316	-0.18134					50	24	3	0	0	0	0.013065	3	6493	6480;6493;6506		171.53	42.671	1	3783500			72983	2184	51140	51221	79761;79762;79763	79762					-0.002311093448156498
SLAGNTYQL	9	Unmodified	_SLAGNTYQL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.7482604980469	2	483.748182	965.481811	0.83333	0.00040312	-0.70701	-0.00034201	0.12633	6.111E-05	483.74769043513027	58.947	1.0025	58.705	58.422	59.424	-0.24166					56	24	3	0	0	0	0.016542	3	6477	6477;6487;6501		154.12	33.497	1	3639200			72984	2184	51140	51221	79764;79765;79766	79764					-0.002311093448156498
SLAGNTYQL	9	Unmodified	_SLAGNTYQL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.748182	965.481811	0.5372	0.00025987	0.29911	0.00014469	0.83631	0.00040456	483.7480936832222	58.626	0.80351	58.626	58.342	59.145	0	-0.02236	0.00026732	NaN	171.53	60	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2918900			72985	2184	51140	51221							-0.002311093448156498
SLAGNTYQL	9	Unmodified	_SLAGNTYQL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.748182	965.481811	0.11913	5.763E-05	0.43985	0.00021278	0.55898	0.00027041	483.7482515040134	58.476	0.80846	58.567	58.26	59.068	0.091217	-0.080845	0.00040349	NaN	171.53	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2416600			72986	2184	51140	51221							-0.002311093448156498
SLAIHRLN	8	Unmodified	_SLAIHRLN_					0	0	0		ENST00000508722.5_1_5:34839321-34867279:+|nuORF;nc|ENSG00000205838|Q6PF05-2|TTC23L;ENSG00000205838|ENST00000505624|TTC23L;nc|ENSG00000205838|Q6PF05-3|TTC23L	ENST00000508722.5_1_5:34839321-34867279:+|nuORF	ENST00000508722.5_1_5:34839321-34867279:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7609558105469	2	462.274701	922.534849	-0.16587	-7.6679E-05	3.5005	0.0016182	3.3346	0.0015415	462.2764945741044	49.279	0.72735	49.126	48.829	49.557	-0.15277					37	19	3	0	0	0	0.027866	1	5043	5043		20.947	0	1	320260			72987	15787	51141	51222	79767	79767					0.070483132285176
SLAIVPLLTE	10	Unmodified	_SLAIVPLLTE_					0	0	0		ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.793701171875	2	528.320983	1054.62741	0.1097	5.7958E-05	-2.7878	-0.0014728	-2.6781	-0.0014149	528.3194996171968	37.012	0.57699	36.819	36.537	37.114	-0.193					25	14	2	0	0	0	0.03519	1	2960	2960		44.377	11.565	1	587180			72988	5864	51142	51223	79768	79768					0.10228353451384464
SLAIVPLLTE	10	Unmodified	_SLAIVPLLTE_					0	0	0		ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	ENSG00000146221|ENST00000371505|TCTE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.320983	1054.62741	-0.8719	-0.00046064	-1.7942	-0.00094791	-2.6661	-0.0014086	528.3199629847485	37.026	0.46974	36.806	36.567	37.037	-0.2195	0.0067031	0.00081003	NaN	29.17	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583620			72989	5864	51142	51223							0.10228353451384464
SLAKETLEP	9	Unmodified	_SLAKETLEP_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;ELP3-MYO5C|1|fusion	ENSG00000128833|ENST00000261839|MYO5C;ELP3-MYO5C|1|fusion	ELP3-MYO5C|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7699890136719	2	494.27149	986.528426	-0.10734	-5.3056E-05	-4.3864	-0.0021681	-4.4938	-0.0022211	494.27153823154924	70.446	0.70564	70.458	70.272	70.978	0.012421					46	16	4	0	0	0	0.6504	1	8441	8441		49.442	0	1	1084700			72990	703;4315	51143	51224	79769	79769					0.03462330486479459
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.27362060546875	2	498.274032	994.533512	0.011674	5.8168E-06	0.080553	4.0138E-05	0.092227	4.5954E-05	498.2738240796607	45.603	1.0299	45.603	45.278	46.308	0					68	29	4	0	0	0	0.26413	2	4449	4449;4463		80.455	23.734	1	4439800			72991	9377	51144	51225	79770;79771	79770					0.036026343490902946
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.2752685546875	2	498.274032	994.533512	-0.65312	-0.00032544	0.89509	0.000446	0.24197	0.00012057	498.274182462991	45.701	0.96764	45.549	45.276	46.244	-0.15157					65	27	4	0	0	0	0.33603	1	4462	4462		70.816	23.159	1	4142800			72992	9377	51144	51225	79772	79772					0.036026343490902946
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2739562988281	2	498.274032	994.533512	-0.085114	-4.241E-05	0.48201	0.00024017	0.39689	0.00019776	498.2740531082621	45.586	1.1908	45.63	45.11	46.301	0.04388					73	34	4	0	0	0	0.14181	2	4388	4388;4400		101.25	21.802	1	4306600			72993	9377	51144	51225	79773;79774	79773					0.036026343490902946
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.274032	994.533512	-0.15754	-7.8499E-05	-0.21967	-0.00010946	-0.37721	-0.00018795	498.27379462980144	45.668	0.71237	45.571	45.326	46.039	-0.096649	-0.0082327	-0.00044437	NaN	101.25	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736080			72994	9377	51144	51225							0.036026343490902946
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.274032	994.533512	-0.19493	-9.7129E-05	-0.36086	-0.00017981	-0.55579	-0.00027693	498.273932520227	45.855	0.77271	45.593	45.35	46.123	-0.26118	0.014249	-0.00058508	NaN	101.25	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571250			72995	9377	51144	51225							0.036026343490902946
SLAKIYTEA	9	Unmodified	_SLAKIYTEA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.274032	994.533512	-1.0013	-0.00049892	0.47716	0.00023775	-0.52414	-0.00026117	498.2740803776826	45.73	0.72315	45.528	45.358	46.081	-0.20226	-0.051031	0.00025005	NaN	101.25	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	623010			72996	9377	51144	51225							0.036026343490902946
SLAKWLTL	8	Unmodified	_SLAKWLTL_					0	0	0		ENST00000534947.5_1_12:6833539-6833665:+|nuORF	ENST00000534947.5_1_12:6833539-6833665:+|nuORF	ENST00000534947.5_1_12:6833539-6833665:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2922668457031	2	466.284203	930.553853	-0.88778	-0.00041396	1.9256	0.00089789	1.0379	0.00048393	466.28514693058344	60.777	0.48749	60.777	60.509	60.996	0					15	12	2	0	0	0	0.027866	1	7034	7034		13.775	0	1	78563			72997	16339	51145	51226	79775	79775					0.08579849799559724
SLALAWQEP	9	Unmodified	_SLALAWQEP_					0	0	0		ENST00000278823.6_1_11:62369120-62369234:-|nuORF	ENST00000278823.6_1_11:62369120-62369234:-|nuORF	ENST00000278823.6_1_11:62369120-62369234:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.32025146484375	2	507.766374	1013.5182	-0.32163	-0.00016331	3.213	0.0016315	2.8914	0.0014682	507.7679249225422	73.762	0.30003	73.49	73.277	73.577	-0.27126					11	7	2	0	0	0	0.024447	1	8963	8963		19.104	0	1	344380			72998	11703	51146	51227	79776	79776					0.01197767551900597
SLALSKKQP	9	Unmodified	_SLALSKKQP_					0	0	0			REV__ENST00000366334.3_1_11:73819029-73820255:-|nuORF	REV__ENST00000366334.3_1_11:73819029-73820255:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3089599609375	2	486.297842	970.581131	-0.61683	-0.00029996	1.2053	0.00058612	0.58845	0.00028616	486.298291968652	65.234	0.81616	65.272	64.707	65.523	0.037384					35	22	2	0	0	0	0.024436	1	7675	7675		30.504	0	1	1674600	+		72999	30970	51147	51228	79777	79777					0.09466333339946686
SLALVPHVL	9	Unmodified	_SLALVPHVL_					0	0	0			REV__nc|ENSG00000171671|Q9BTD1|SHANK2-AS3	REV__nc|ENSG00000171671|Q9BTD1|SHANK2-AS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.7976989746094	2	474.797478	947.580402	0.033066	1.57E-05	0.043173	2.0499E-05	0.076239	3.6198E-05	474.79735697074597	70.363	0.42982	70.106	69.852	70.282	-0.25713					24	10	3	0	0	0	0.33184	1	8203	8203		71.378	13.567	1	968480	+		73000	36933	51148	51229	79778	79778					0.10451538690892903
SLALWAPAF	9	Unmodified	_SLALWAPAF_					0	0	0		ENST00000569969.5_2_16:28993234-28993426:+|nuORF;nc|ENSG00000169682|Q9H2V7-4|SPNS1;ENSG00000169682|ENST00000311008|SPNS1	ENST00000569969.5_2_16:28993234-28993426:+|nuORF	ENST00000569969.5_2_16:28993234-28993426:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2500305175781	2	488.268553	974.522553	-0.38834	-0.00018961	-2.8832	-0.0014078	-3.2716	-0.0015974	488.2669101817623	33.549	0.40166	33.318	33.114	33.516	-0.23107					12	9	2	0	0	0	0.024293	1	2404	2404		33.516	0	1	70333			73001	7964	51149	51230	79779	79779					0.03427276765467013
SLAMLPLKV	9	Unmodified	_SLAMLPLKV_					0	0	0			REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7947998046875	2	486.301539	970.588524	0.55206	0.00026847	3.5263	0.0017149	4.0784	0.0019833	486.30302782856256	19.083	0.29585	18.88	18.658	18.954	-0.20371					8	5	2	0	0	0	0.024477	1	365	365		27.882	11.409	1	47898	+		73002	19427	51150	51231	79780	79780					0.10205349616023796
SLAMLPLKV	9	Unmodified	_SLAMLPLKV_					0	0	0			REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.301539	970.588524	1.8546	0.0009019	1.9503	0.00094844	3.8049	0.0018503	486.3024782938696	18.699	0.39244	18.699	18.48	18.873	0	-0.13355	-2.7612E-05	NaN	27.882	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35269	+		73003	19427	51150	51231							0.10205349616023796
SLAMLPLKV	9	Unmodified	_SLAMLPLKV_					0	0	0			REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.301539	970.588524	3.0045	0.0014611	1.1141	0.00054177	4.1186	0.0020029	486.3019066726365	18.854	0.49117	18.917	18.599	19.091	0.063307	0.084742	-0.00084095	NaN	27.882	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34479	+		73004	19427	51150	51231							0.10205349616023796
SLAMLPLKV	9	Unmodified	_SLAMLPLKV_					0	0	0			REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.301539	970.588524	0.47031	0.00022871	4.2707	0.0020769	4.741	0.0023056	486.30305772998685	19.023	0.24638	18.863	18.688	18.935	-0.16079	0.029871	0.0022292	NaN	27.882	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48851	+		73005	19427	51150	51231							0.10205349616023796
SLAMLPLKV	9	Unmodified	_SLAMLPLKV_					0	0	0			REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	REV__chr22:37641478-37642542|194|13.55|0.59|4.53|+|0|SH3BP1,None|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.301539	970.588524	2.4221	0.0011779	1.6997	0.00082656	4.1218	0.0020044	486.30228403074466	19.038	0.34547	18.805	18.632	18.978	-0.23345	-0.027909	-0.00027139	NaN	27.882	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41118	+		73006	19427	51150	51231							0.10205349616023796
SLANETHQL	9	Unmodified	_SLANETHQL_					0	0	0		ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2	ENST00000507686.1_1_4:2747118-2749660:-|nuORF	ENST00000507686.1_1_4:2747118-2749660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7565612792969	2	506.756538	1011.49852	-1.294	-0.00065574	0.61505	0.00031168	-0.67894	-0.00034406	506.7569038145136	38.27	0.67678	38.27	38.003	38.68	0					37	18	3	0	0	0	0.10174	1	3201	3201		110.12	30.407	1	4159300			73007	7875	51151	51232	79781	79781					-0.006766084588548438
SLANETHQL	9	Unmodified	_SLANETHQL_					0	0	0		ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2	ENST00000507686.1_1_4:2747118-2749660:-|nuORF	ENST00000507686.1_1_4:2747118-2749660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7565612792969	2	506.756538	1011.49852	-0.99324	-0.00050333	0.27127	0.00013747	-0.72196	-0.00036586	506.7567439932454	38.152	0.86778	38.069	37.777	38.645	-0.082516					58	23	5	0	0	0	0.025498	1	3172	3172		145.16	54.786	1	4100900			73008	7875	51151	51232	79782	79782					-0.006766084588548438
SLANETHQL	9	Unmodified	_SLANETHQL_					0	0	0		ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2	ENST00000507686.1_1_4:2747118-2749660:-|nuORF	ENST00000507686.1_1_4:2747118-2749660:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.7566833496094	2	506.756538	1011.49852	-1.6597	-0.00084108	1.034	0.00052397	-0.62575	-0.0003171	506.7571274002043	38.37	0.90503	38.397	38.092	38.997	0.027279					70	24	5	0	0	0	0.14181	1	3164	3164		101.25	21.54	1	3838100			73009	7875	51151	51232	79783	79783					-0.006766084588548438
SLAPGFKGF	9	Unmodified	_SLAPGFKGF_					0	0	0			REV__nc|ENSG00000070756|P11940-2|PABPC1	REV__nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	461.2652587890625	2	462.252903	922.491253	-1.5895	-0.00073474	1.2893	0.00059598	-0.30018	-0.00013876	462.2536727184642	92.251	1.5906	92.107	90.938	92.528	-0.14356					59	37	3	0	0	0	0.024506	1	11351	11351		23.042	9.2672	1	263210	+		73010	20434	51152	51233	79784	79784					0.026907037313776527
SLAPGFKGF	9	Unmodified	_SLAPGFKGF_					0	0	0			REV__nc|ENSG00000070756|P11940-2|PABPC1	REV__nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.252903	922.491253	0.82415	0.00038097	-1.0855	-0.00050178	-0.26136	-0.00012082	462.25253513837765	92.194	0.58657	92.204	91.917	92.504	0.0094147	0.0060573	-0.00092493	NaN	23.042	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313820	+		73011	20434	51152	51233							0.026907037313776527
SLAPLGRRE	9	Unmodified	_SLAPLGRRE_					0	0	0			REV__ENST00000309575.4_1_3:142838740-142838905:+|nuORF	REV__ENST00000309575.4_1_3:142838740-142838905:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7901916503906	2	499.790715	997.566878	-1.1573	-0.00057842	1.3785	0.00068897	0.2212	0.00011055	499.79096174757564	29.52	1.3112	29.52	29.073	30.384	0					53	32	4	0	0	0	0.56934	1	1815	1815		54.776	19.158	1	1610000	+		73012	30164	51153	51234	79785	79785					0.06799680911660744
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.77435302734375	2	496.7742	991.533846	0.34628	0.00017202	-0.73356	-0.00036441	-0.38727	-0.00019239	496.77377768655884	77.696	1.3171	77.696	77.382	78.7	0					90	31	5	0	0	0	0.014454	4	9591	9591;9603;9616;9627		200.16	65.346	1	8596700			73013	7950	51154	51235	79786;79787;79788;79789	79786					0.037740540689469526
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.7742004394531	2	496.7742	991.533846	0.55586	0.00027614	-1.055	-0.00052411	-0.49917	-0.00024797	496.7736570267454	77.858	1.2389	77.647	77.333	78.572	-0.21087					85	29	5	0	0	0	0.014454	4	9586	9586;9598;9609;9622		215.39	67.347	1	9122300			73014	7950	51154	51235	79790;79791;79792;79793	79790					0.037740540689469526
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.7738952636719	2	496.7742	991.533846	-0.18786	-9.3326E-05	-0.30285	-0.00015045	-0.49071	-0.00024377	496.77400037897587	77.727	1.2005	77.743	77.406	78.606	0.015907					82	28	5	0	0	0	0.010583	4	9527	9515;9527;9539;9550		231.3	69.4	1	7912200			73015	7950	51154	51235	79794;79795;79796;79797	79795					0.037740540689469526
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.7741394042969	2	496.7742	991.533846	-0.27319	-0.00013571	0.11238	5.5827E-05	-0.16081	-7.9885E-05	496.7741290338955	77.937	1.367	77.675	77.313	78.68	-0.26202					74	31	4	0	0	0	0.013065	2	9284	9284;9296		185.55	50.739	1	4338000			73016	7950	51154	51235	79798;79799	79798					0.037740540689469526
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7742919921875	2	496.7742	991.533846	-0.32362	-0.00016077	0.030937	1.5369E-05	-0.29268	-0.0001454	496.77405443124223	77.756	1.1963	77.594	77.268	78.464	-0.16196					74	27	5	0	0	0	0.013293	1	9236	9236		176.09	28.044	1	3970000			73017	7950	51154	51235	79800	79800					0.037740540689469526
SLAQYLINA	9	Unmodified	_SLAQYLINA_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.7742	991.533846	0.74244	0.00036882	-0.896	-0.00044511	-0.15356	-7.6286E-05	496.77362581020765	77.878	1.1021	77.635	77.32	78.422	-0.24232	-0.029425	-0.00030285	NaN	231.3	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4708600			73018	7950	51154	51235							0.037740540689469526
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.789794921875	2	510.78985	1019.56515	0.61555	0.00031442	-1.6298	-0.00083246	-1.0142	-0.00051804	510.7892726701576	85.687	2.5688	85.687	84.709	87.278	0					179	60	5	0	0	0	0.010583	10	10736	10724;10736;10748;10760;10772;10784;10796;10809;10821;10866		231.3	110.68	1	93154000			73019	9954	51155	51236	79801;79802;79803;79804;79805;79806;79807;79808;79809;79810	79802					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7857971191406	2	510.78985	1019.56515	0.061177	3.1249E-05	1.4185	0.00072454	1.4796	0.00075579	510.7903375180981	87.434	2.0763	87.434	87.194	89.27	0					69	49	3	0	0	0	0.024288	1	10973	10973		62.107	0	1	190850			73020	9954	51155	51236	79811	79811					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7894592285156	2	510.78985	1019.56515	-0.31572	-0.00016127	-0.75796	-0.00038716	-1.0737	-0.00054842	510.7896570556892	85.64	2.3554	85.583	84.563	86.919	-0.05761					168	55	5	0	0	0	0.008678	10	10707	10684;10695;10707;10719;10731;10743;10755;10767;10779;10791		247.94	127.32	1	86534000			73021	9954	51155	51236	79812;79813;79814;79815;79816;79817;79818;79819;79820;79821	79814					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7855529785156	2	510.78985	1019.56515	0.38862	0.0001985	1.4319	0.0007314	1.8205	0.0009299	510.79022099145425	87.863	2.0751	87.828	87.111	89.186	-0.034737					79	49	2	0	0	0	0.024428	1	10932	10932		56.434	24.904	1	132190			73022	9954	51155	51236	79822	79822					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.7896728515625	2	510.78985	1019.56515	-1.0112	-0.00051651	-0.08007	-4.0899E-05	-1.0913	-0.00055741	510.7900336028134	85.613	2.3944	85.636	84.535	86.93	0.023666					180	56	5	0	0	0	0.010583	10	10648	10637;10648;10660;10672;10684;10696;10708;10721;10732;10782		231.3	110.68	1	92456000			73023	9954	51155	51236	79823;79824;79825;79826;79827;79828;79829;79830;79831;79832	79824					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.78515625	2	510.78985	1019.56515	0.65962	0.00033693	1.3803	0.00070503	2.0399	0.001042	510.79030054363614	87.563	1.0612	87.584	87.137	88.198	0.021027					37	25	2	0	0	0	0.024337	1	10879	10879		58.23	15.834	1	144630			73024	9954	51155	51236	79833	79833					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.78985595703125	2	510.78985	1019.56515	0.28714	0.00014667	-1.0732	-0.0005482	-0.78609	-0.00040153	510.7893799821099	85.685	2.5049	85.49	84.927	87.432	-0.19508					155	58	5	0	0	0	0.008678	6	10369	10357;10369;10381;10393;10405;10417		247.94	110.68	1	36670000			73025	9954	51155	51236	79834;79835;79836;79837;79838;79839	79835					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7894592285156	2	510.78985	1019.56515	0.5717	0.00029202	-1.4214	-0.00072606	-0.84974	-0.00043404	510.78918788895163	85.619	2.8795	85.469	84.623	87.503	-0.14967					181	67	6	0	0	0	0.010583	6	10383	10359;10371;10383;10395;10407;10420		231.3	110.68	1	33702000			73026	9954	51155	51236	79840;79841;79842;79843;79844;79845	79842					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-4|PCBP2	nc|ENSG00000197111|Q15366-4|PCBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7894592285156	2	510.78985	1019.56515	0.3001	0.00015329	-1.1633	-0.0005942	-0.8632	-0.00044092	510.78932676345505	85.648	2.4268	85.51	84.988	87.415	-0.13752					161	56	5	0	0	0	0.008678	6	10386	10351;10362;10374;10386;10398;10410		247.94	127.32	1	33099000			73027	9954	51155	51236	79846;79847;79848;79849;79850;79851	79849					0.056146271030456774
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2875366210938	2	517.287474	1032.5604	0.072132	3.7313E-05	-1.1132	-0.00057583	-1.041	-0.00053851	517.286927677461	49.465	1.0098	49.465	49.106	50.116	0					74	27	5	0	0	0	0.014034	3	5116	5105;5116;5127		166.68	59.671	1	4917300			73028	3629	51156	51237	79852;79853;79854	79853					0.04541742960282136
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.287353515625	2	517.287474	1032.5604	-0.1131	-5.8508E-05	-0.35866	-0.00018553	-0.47176	-0.00024404	517.2870599023634	49.691	0.91576	49.539	49.182	50.098	-0.1512					51	24	4	0	0	0	0.014034	3	5133	5111;5121;5133		166.68	59.671	1	4936100			73029	3629	51156	51237	79855;79856;79857	79857					0.04541742960282136
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.287109375	2	517.287474	1032.5604	-1.8846	-0.00097487	1.1632	0.00060169	-0.72142	-0.00037318	517.2880625480343	49.361	0.99691	49.435	48.95	49.947	0.074192					59	26	4	0	0	0	0.013065	4	5039	5018;5028;5039;5054		171.53	59.121	1	4487400			73030	3629	51156	51237	79858;79859;79860;79861	79860					0.04541742960282136
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.28759765625	2	517.287474	1032.5604	-0.20009	-0.0001035	-0.060324	-3.1205E-05	-0.26041	-0.00013471	517.2873736121963	49.513	1.0239	49.413	48.992	50.015	-0.1008					43	26	3	0	0	0	0.015752	1	4980	4980		158.07	45.664	1	2194300			73031	3629	51156	51237	79862	79862					0.04541742960282136
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.287353515625	2	517.287474	1032.5604	0.1294	6.6938E-05	-0.85085	-0.00044013	-0.72145	-0.0003732	517.2872259315587	49.768	1.0199	49.488	49.011	50.031	-0.27977					53	26	3	0	0	0	0.053401	1	5011	5011		127.46	42.301	1	2291900			73032	3629	51156	51237	79863	79863					0.04541742960282136
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;PIK3R1|p.L573Qfs*27|1|0.13|ENSG00000145675|chr5:68295297-68295301|TGAGA/-|frameshift_variant;ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1	nc|ENSG00000117461|Q92569-3|PIK3R3	nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2871704101562	2	517.287474	1032.5604	0.32698	0.00016914	-0.80134	-0.00041452	-0.47436	-0.00024538	517.2870828272966	49.651	0.86092	49.47	49.04	49.901	-0.18071					53	22	4	0	0	0	0.013065	1	4992	4992		171.53	47.452	1	2337100			73033	3629	51156	51237	79864	79864					0.04541742960282136
SLARAREEATP	11	Unmodified	_SLARAREEATP_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2304382324219	3	400.882559	1199.62585	0.60312	0.00024178	-0.73932	-0.00029638	-0.1362	-5.4602E-05	400.88211978592443	21.602	1.1621	21.602	20.85	22.012	0					41	23	4	0	0	0	0.024726	1	731	731		32.034	8.5114	1	223380	+		73034	23007	51157	51238	79865	79865					0.034021124153241544
SLARHLSDA	9	Unmodified	_SLARHLSDA_					0	0	0		TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENST00000546145.1_1_6:155561684-155565944:+|nuORF;nc|ENSG00000146426|Q8IVF5-3|TIAM2	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	TIAM2|p.S1322Ffs*24|1|0.39|ENSG00000146426|chr6:155250922-155250923|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2716064453125	2	485.259248	968.503943	0.34514	0.00016748	-0.51772	-0.00025123	-0.17258	-8.3746E-05	485.258835569489	32.596	1.3942	32.403	31.899	33.293	-0.19261					66	33	3	0	0	0	0.022832	1	2313	2313		82.241	30.905	1	625730			73035	5884	51158	51239	79866	79866					0.018431151236086407
SLARLESLV	9	Unmodified	_SLARLESLV_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2937927246094	2	494.295299	986.576045	-0.091281	-4.512E-05	0.012284	6.0718E-06	-0.078997	-3.9048E-05	494.2951757967981	53.328	0.80251	53.138	52.793	53.596	-0.18981					56	21	4	0	0	0	0.53979	1	5581	5581		56.721	3.7844	1	2389600	+		73036	29044	51159	51240	79867	79867					0.08222029477326487
SLARRIFST	9	Unmodified	_SLARRIFST_					0	0	0		ENST00000325327.3_1_19:2430913-2431604:-|nuORF	ENST00000325327.3_1_19:2430913-2431604:-|nuORF	ENST00000325327.3_1_19:2430913-2431604:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.254150390625	2	525.806365	1049.59818	-0.47149	-0.00024791	-4.0193	-0.0021134	-4.4908	-0.0023613	525.8038563638703	45.556	0.5338	45.354	44.959	45.492	-0.20226					21	15	2	0	0	0	0.024511	1	4279	4279		25.574	9.1009	1	154800			73037	12271	51160	51241	79868	79868					0.07536253945772842
SLARRIFST	9	Unmodified	_SLARRIFST_					0	0	0		ENST00000325327.3_1_19:2430913-2431604:-|nuORF	ENST00000325327.3_1_19:2430913-2431604:-|nuORF	ENST00000325327.3_1_19:2430913-2431604:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.806365	1049.59818	-0.14675	-7.716E-05	-3.2302	-0.0016985	-3.377	-0.0017756	525.8043315357294	45.581	0.36852	45.328	45.091	45.459	-0.25252	-0.012781	0.00024492	NaN	19.104	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82869			73038	12271	51160	51241							0.07536253945772842
SLASAFKKGR	10	Unmodified	_SLASAFKKGR_					0	0	0			REV__nc|ENSG00000170525|Q16875-3|PFKFB3	REV__nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2728881835938	2	532.81419	1063.61383	-0.59514	-0.0003171	-0.53757	-0.00028643	-1.1327	-0.00060353	532.8139523613066	56.003	0.54642	55.847	55.591	56.138	-0.15602					34	14	3	0	0	0	0.03519	1	6160	6160		24.519	2.5593	1	422920	+		73039	26483	51161	51242	79869	79869					0.0845654046281652
SLASLLSLD	9	Unmodified	_SLASLLSLD_					0	0	0			REV__ENST00000426654.6_1_16:69599384-69602431:+|nuORF	REV__ENST00000426654.6_1_16:69599384-69602431:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2414855957031	2	459.760758	917.506963	-0.46716	-0.00021478	-0.0057021	-2.6216E-06	-0.47286	-0.0002174	459.7608620199391	85.855	0.97694	85.879	85.616	86.593	0.023666					50	22	4	0	0	0	0.024457	1	10694	10694		21.96	6.3181	1	527440	+		73040	32277	51162	51243	79870	79870					0.04490945457757789
SLASLPLRV	9	Unmodified	_SLASLPLRV_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.30084228515625	2	478.300384	954.586216	0.056827	2.718E-05	0.18078	8.6466E-05	0.2376	0.00011365	478.30033460004853	65.48	1.3155	65.517	64.928	66.244	0.037384					79	35	3	0	0	0	0.31037	1	7707	7707		74.255	12.148	1	4486500			73041	2607	51163	51244	79871	79871					0.10710637202578255
SLASRVPLL	9	Unmodified	_SLASRVPLL_					0	0	0		ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.30059814453125	2	478.300384	954.586216	0.16459	7.8724E-05	0.031339	1.499E-05	0.19593	9.3714E-05	478.30026947860597	65.818	1.1665	65.546	65.055	66.221	-0.27282					82	31	4	0	0	0	0.27161	1	7779	7779		79.451	2.6044	1	4858100			73042	9765	51164	51245	79872	79872					0.10710637202578255
SLASTSPSLL	10	Unmodified	_SLASTSPSLL_					0	0	0		nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-3|JPT2	nc|ENSG00000206053|Q9H910-3|JPT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.270263671875	2	488.27149	974.528426	0.056726	2.7697E-05	-0.55812	-0.00027251	-0.50139	-0.00024482	488.27117924021184	22.959	0.65362	22.757	22.499	23.153	-0.20193					24	13	2	0	0	0	0.85955	1	876	876		56.721	0.28726	1	549680			73043	18675	51165	51246	79873	79873					0.0401433048649551
SLASVLRPL	9	Unmodified	_SLASVLRPL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.2998962402344	2	478.300384	954.586216	0.68218	0.00032629	-0.42685	-0.00020416	0.25533	0.00012212	478.30004474971287	65.426	1.0209	65.426	65.124	66.145	0					71	27	4	0	0	0	0.20967	2	7766	7766;7778		87.754	8.3033	1	3881900			73044	1175;38049	51166	51247	79874;79875	79874					0.10710637202555517
SLASVLRPL	9	Unmodified	_SLASVLRPL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.300384	954.586216	0.17708	8.4699E-05	0.16848	8.0586E-05	0.34557	0.00016528	478.3002982066131	65.782	0.62187	65.541	65.167	65.789	-0.24145	0.03585	0.0002023	NaN	87.754	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61497			73045	1175;38049	51166	51247							0.10710637202555517
SLASVLRPL	9	Unmodified	_SLASVLRPL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.300384	954.586216	-1.1058	-0.00052889	0.19766	9.4543E-05	-0.90811	-0.00043435	478.3003375548169	65.707	0.70052	65.494	65.052	65.753	-0.21328	-0.011006	0.00023021	NaN	87.754	18	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100420			73046	1175;38049	51166	51247							0.10710637202555517
SLATEDGFTPL	11	Unmodified	_SLATEDGFTPL_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	576.3079833984375	2	575.784961	1149.55537	-0.023345	-1.3442E-05	-1.9569	-0.0011268	-1.9803	-0.0011402	575.783654009199	75.096	0.36197	74.849	74.672	75.034	-0.24696					11	8	2	0	0	0	0.024762	1	9154	9154		37.812	7.3079	1	57478			73047	6183;18381	51167	51248	79876	79876					-0.013426056929802144
SLATHLAI	8	Unmodified	_SLATHLAI_					0	0	0		ENST00000492890.5_1_9:35561867-35563864:-|nuORF	ENST00000492890.5_1_9:35561867-35563864:-|nuORF	ENST00000492890.5_1_9:35561867-35563864:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2455139160156	2	413.245078	824.475603	-0.39598	-0.00016364	1.0429	0.00043096	0.6469	0.00026733	413.2452994704721	31.226	0.69846	31.041	30.702	31.4	-0.18503					39	17	3	0	0	0	0.94001	1	2053	2053		46.766	0.81448	1	866580			73048	15493	51168	51249	79877	79877					0.056344172143212745
SLATTDLLVS	10	Unmodified	_SLATTDLLVS_					0	0	0		ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.28143310546875	2	510.284597	1018.55464	-0.23334	-0.00011907	-3.8167	-0.0019476	-4.05	-0.0020667	510.28266200220463	97.848	0.91312	97.683	96.991	97.904	-0.1652					37	20	2	0	0	0	0.88896	1	12087	12087		54.776	1.4249	1	283010			73049	8903	51169	51250	79878	79878					0.046105996579512976
SLAVLALLCV	10	Unmodified	_SLAVLALLCV_					0	0	0		ENSG00000259803|ENST00000682282|SLC22A31;nc|ENSG00000259803|A6NKX4|SLC22A31	ENSG00000259803|ENST00000682282|SLC22A31	ENSG00000259803|ENST00000682282|SLC22A31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2900390625	2	501.306821	1000.59909	0.059975	3.0066E-05	-4.3863	-0.0021989	-4.3263	-0.0021688	501.30438070146306	83.482	0.68124	83.392	82.958	83.639	-0.090446					30	15	3	0	0	0	0.03519	1	10371	10371		15.642	0.77694	1	241880			73050	10936	51170	51251	79879	79879					0.09881332270458643
SLAVPKETDC	10	Carbamidomethyl (C)	_SLAVPKETDC(Carbamidomethyl (C))_	SLAVPKETDC(1)		SLAVPKETDC(88)		0	1	0		ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	ENSG00000218823|ENST00000404991|PAPOLB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.2716674804688	2	560.271164	1118.52777	0.085492	4.7899E-05	0.34171	0.00019145	0.42721	0.00023935	560.2712192929854	93.204	2.5144	93.082	92.341	94.856	-0.12215					110	58	4	0	0	0	0.50517	1	11460	11460		87.696	18.91	1	1927600			73051	10604	51171	51252	79880	79880	150				-0.0267483222487499
SLAVVVIYLI	10	Unmodified	_SLAVVVIYLI_					0	0	0		ENSG00000019169|ENST00000327097|MARCO	ENSG00000019169|ENST00000327097|MARCO	ENSG00000019169|ENST00000327097|MARCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3165893554688	2	545.349543	1088.68453	-0.40392	-0.00022028	4.2869	0.0023379	3.883	0.0021176	545.3510768122218	89.274	0.45659	89.147	88.914	89.37	-0.12774					15	10	2	0	0	0	0.03519	1	10899	10899		19.997	0	1	117980			73052	946	51172	51253	79881	79881					0.14373820727746534
SLAVVVIYLI	10	Unmodified	_SLAVVVIYLI_					0	0	0		ENSG00000019169|ENST00000327097|MARCO	ENSG00000019169|ENST00000327097|MARCO	ENSG00000019169|ENST00000327097|MARCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3165283203125	2	545.349543	1088.68453	-0.45336	-0.00024724	0.10566	5.7622E-05	-0.3477	-0.00018962	545.3491353403241	87.046	0.46233	86.909	86.618	87.08	-0.13734					17	10	2	0	0	0	0.03519	1	10579	10579		32.812	11.865	1	102670			73053	946	51172	51253	79882	79882					0.14373820727746534
SLAVVVIYLI	10	Unmodified	_SLAVVVIYLI_					0	0	0		ENSG00000019169|ENST00000327097|MARCO	ENSG00000019169|ENST00000327097|MARCO	ENSG00000019169|ENST00000327097|MARCO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3162841796875	2	545.349543	1088.68453	-0.34856	-0.00019009	-2.6783	-0.0014606	-3.0268	-0.0016507	545.3490988113246	89.027	0.45443	88.889	88.777	89.231	-0.13761					12	10	2	0	0	0	0.03519	1	10884	10884		20.947	3.582	1	61254			73054	946	51172	51253	79883	79883					0.14373820727746534
SLAWKNWR	8	Unmodified	_SLAWKNWR_					0	0	0			REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8013305664062	2	530.787976	1059.5614	-0.20154	-0.00010698	-2.5145	-0.0013346	-2.716	-0.0014416	530.7866362102758	41.361	0.63073	41.238	40.87	41.5	-0.12317					40	17	4	0	0	0	0.027866	1	3634	3634		42.474	3.6683	1	657200	+		73055	34538	51173	51254	79884	79884					0.03400002119838064
SLAWKNWR	8	Unmodified	_SLAWKNWR_					0	0	0			REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.787976	1059.5614	-0.44776	-0.00023767	-2.3898	-0.0012685	-2.8376	-0.0015061	530.7866998008566	41.188	0.6709	41.188	40.908	41.579	0	-0.074849	0.00011501	NaN	38.806	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498600	+		73056	34538	51173	51254							0.03400002119838064
SLAWKNWR	8	Unmodified	_SLAWKNWR_					0	0	0			REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.787976	1059.5614	-0.12803	-6.7959E-05	-2.5816	-0.0013703	-2.7096	-0.0014382	530.7865820773768	41.34	0.52176	41.363	41.111	41.633	0.023006	0.099713	-8.8599E-05	NaN	38.806	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528500	+		73057	34538	51173	51254							0.03400002119838064
SLAWLRLY	8	Unmodified	_SLAWLRLY_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2;REV__ENSG00000110719|ENST00000265686|TCIRG1;REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.75311279296875	2	511.295102	1020.57565	-0.2208	-0.0001129	-1.8225	-0.00093183	-2.0433	-0.0010447	511.2929739741812	45.642	0.77186	45.389	45.091	45.863	-0.25252					39	21	3	0	0	0	0.027866	1	4378	4378		68.485	2.6815	1	1061500	+		73058	27757;20056;21870	51174	51255	79885	79885					0.06618654548128688
SLCCCCQSA	9	Unmodified	_SLCCCCQSA_					0	0	0			REV__ENSG00000174132|ENST00000312637|FAM174A	REV__ENSG00000174132|ENST00000312637|FAM174A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.152834	916.291115	-0.87973	-0.00040393	4.4276	0.0020329	3.5478	0.001629	459.154987857724	26.248	0.12707	26.085	26.038	26.165	-0.16331					5	3	2	0	0	0	0.024427	1	1324	1324		26.693	4.733	1	59871	+		73059	26835	51175	51256	79886	79886					-0.17037921586063476
SLCCPAIFLT	10	Unmodified	_SLCCPAIFLT_					0	0	0			REV__ENST00000496711.5_1_9:130118742-130126953:+|nuORF	REV__ENST00000496711.5_1_9:130118742-130126953:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7925415039062	2	534.266838	1066.51912	-0.80258	-0.00042879	-0.022078	-1.1796E-05	-0.82466	-0.00044059	534.2663384286072	45.223	0.75362	45.012	44.595	45.349	-0.21109					26	20	2	0	0	0	0.03519	1	4201	4201		34.173	0	1	331610	+		73060	33835	51176	51257	79887	79887					-0.01147477395079477
SLCEAANLP	9	Unmodified	_SLCEAANLP_					0	0	0			REV__NIPBL|p.Q418E|1|0.27|ENSG00000164190|chr5:36976159-36976159|C/G|missense_variant	REV__NIPBL|p.Q418E|1|0.27|ENSG00000164190|chr5:36976159-36976159|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2662658691406	2	459.223485	916.432418	2.1089	0.00096846	2.223	0.0010208	4.3319	0.0019893	459.22431602081485	24.276	0.8751	24.095	23.715	24.59	-0.18089					51	19	3	0	0	0	0.024021	1	1051	1051		49.442	0	1	646570	+		73061	37282	51177	51258	79888	79888					-0.029141406252620072
SLCGDIPCDQ	10	2 Carbamidomethyl (C)	_SLC(Carbamidomethyl (C))GDIPC(Carbamidomethyl (C))DQ_	SLC(1)GDIPC(1)DQ		SLC(67)GDIPC(67)DQ		0	2	0			REV__CON__Q28194	REV__CON__Q28194	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.737548828125	2	582.736631	1163.45871	-0.94751	-0.00055215	4.2331	0.0024668	3.2855	0.0019146	582.7389270539771	66.647	0.74976	66.402	65.891	66.64	-0.24517					52	22	4	0	0	0	0.69662	1	7657	7657		67.494	12.771	1	6967600	+	+	73062	19572	51178	51259	79889	79889	245;246				-0.11648239516102876
SLCILLVAVA	10	Unmodified	_SLCILLVAVA_					0	0	0		ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.28155517578125	2	501.306821	1000.59909	0.055663	2.7904E-05	0.15239	7.6392E-05	0.20805	0.0001043	501.30667269626645	76.541	0.46739	76.29	76.103	76.571	-0.25162					23	10	3	0	0	0	0.03519	1	9101	9101		65.803	0	1	660220			73063	10626	51179	51260	79890	79890					0.09881332270435905
SLCKEQHDL	9	Unmodified	_SLCKEQHDL_					0	0	0			REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2;REV__nc|ENSG00000258628|A8MT19|RHPN2P1	REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.76708984375	2	536.758223	1071.50189	-1.4817	-0.0007953	1.7664	0.00094811	0.2847	0.00015282	536.758937532925	37.786	0.73197	37.786	37.305	38.037	0					31	20	2	0	0	0	0.024344	1	3050	3050		37.812	8.662	1	332680	+		73064	23245;37180	51180	51261	79891	79891					-0.030996816765082258
SLCLQPEQ	8	Unmodified	_SLCLQPEQ_					0	0	0			REV__nc|ENSG00000163482|Q9NRP7-2|STK36	REV__nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2251281738281	2	459.223485	916.432418	-0.30652	-0.00014076	3.9201	0.0018002	3.6135	0.0016594	459.225414960314	26.111	2.5464	25.943	25.502	28.048	-0.16816					199	64	5	0	0	0	0.77775	2	1335	1335;1348		60.972	4.2509	1	47552000	+		73065	25572	51181	51262	79892;79893	79892					-0.029141406252620072
SLCRALLTR	9	Unmodified	_SLCRALLTR_					0	0	0		ENSG00000171004|ENST00000370833|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8186645507812	2	516.802768	1031.59098	-0.72729	-0.00037587	-2.5991	-0.0013432	-3.3263	-0.0017191	516.8012243387029	21.825	0.38749	21.613	21.41	21.798	-0.2128					12	7	2	0	0	0	0.024209	1	673	673		56.721	6.6965	1	86190			73066	8102	51182	51263	79894	79894					0.07645198073646498
SLCRALLTR	9	Unmodified	_SLCRALLTR_					0	0	0		ENSG00000171004|ENST00000370833|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	ENSG00000171004|ENST00000370833|HS6ST2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	516.802768	1031.59098	-0.97312	-0.00050291	-1.0628	-0.00054924	-2.0359	-0.0010522	517.3042656613412	21.588	0.42624	21.588	21.441	21.868	0	-0.030339	0.0019893	NaN	56.721	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12911			73067	8102	51182	51263							0.07645198073646498
SLCSFPTFGL	10	Unmodified	_SLCSFPTFGL_					0	0	0			REV__ENST00000443537.2_1_2:136396190-136406815:+|nuORF	REV__ENST00000443537.2_1_2:136396190-136406815:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3486938476562	2	536.26261	1070.51067	-0.23723	-0.00012722	0.85582	0.00045895	0.6186	0.00033173	536.2630894035525	88.955	0.63374	88.971	88.623	89.257	0.015907					23	14	2	0	0	0	0.03519	1	11132	11132		90.777	24.347	1	437740	+		73068	32581	51183	51264	79895	79895					-0.021767080400195482
SLCSIRRASSV	11	Carbamidomethyl (C)	_SLC(Carbamidomethyl (C))SIRRASSV_	SLC(1)SIRRASSV		SLC(47)SIRRASSV		0	1	0		KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant;nc|ENSG00000184611|Q9NS40-2|KCNH7;ENSG00000184611|ENST00000332142|KCNH7	KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.554443359375	3	412.555678	1234.6452	-0.91033	-0.00037556	-1.9845	-0.00081872	-2.8948	-0.0011943	412.5548441813176	37.721	0.85592	37.501	37.231	38.087	-0.2195					62	23	4	0	0	0	0.95317	1	3055	3055		47.228	7.3545	1	2391600			73069	9355	51184	51265	79896	79896	120				0.03726745434551049
SLCSIRRASSV	11	Carbamidomethyl (C)	_SLC(Carbamidomethyl (C))SIRRASSV_					0	1	0		KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant;nc|ENSG00000184611|Q9NS40-2|KCNH7;ENSG00000184611|ENST00000332142|KCNH7	KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	KCNH7|p.S657Rfs*47|1|0.07|ENSG00000184611|chr2:162423519-162423520|-/AAAGTGC|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	412.555678	1234.6452	-0.93947	-0.00038758	-1.954	-0.00080612	-2.8934	-0.0011937	412.5548468362831	37.759	0.79551	37.541	37.223	38.019	-0.21848	0.0031516	0.00034739	NaN	47.228	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1980600			73070	9355	51184	51265			120				0.03726745434551049
SLCVLWSLIL	10	Unmodified	_SLCVLWSLIL_					0	0	0		ENST00000341285.7_2_4:15627015-15627129:-|nuORF	ENST00000341285.7_2_4:15627015-15627129:-|nuORF	ENST00000341285.7_2_4:15627015-15627129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	574.3161010742188	2	573.833203	1145.65185	-0.090209	-5.1765E-05	-3.9973	-0.0022938	-4.0875	-0.0023455	573.830578299735	57.063	1.3804	56.899	56.201	57.582	-0.16431					54	37	2	0	0	0	0.03519	1	6346	6346		49.442	0	1	181730			73071	12491	51185	51266	79897	79897					0.08485290333260309
SLCWRIKAL	9	Unmodified	_SLCWRIKAL_					0	0	0		ENST00000508736.1_1_12:49994556-49994850:+|nuORF	ENST00000508736.1_1_12:49994556-49994850:+|nuORF	ENST00000508736.1_1_12:49994556-49994850:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2828369140625	2	545.315512	1088.61647	0.14186	7.736E-05	-1.9833	-0.0010815	-1.8415	-0.0010042	545.3144041296646	51.143	0.33976	50.866	50.627	50.967	-0.27643					12	8	2	0	0	0	0.024457	1	5194	5194		29.15	3.5755	1	587310			73072	15788	51186	51267	79898	79898					0.07570672596102668
SLDDLLTNV	9	Unmodified	_SLDDLLTNV_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2610168457031	2	495.261122	988.507691	0.53373	0.00026433	-0.22051	-0.00010921	0.31321	0.00015512	495.2609892052689	84.527	0.82567	84.527	84.215	85.04	0					53	19	4	0	0	0	0.03201	1	10590	10590		139.97	29.851	1	1202700			73073	5692	51187	51268	79899	79899					0.012977401068042127
SLDDLLTNV	9	Unmodified	_SLDDLLTNV_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.26080322265625	2	495.261122	988.507691	-0.66369	-0.0003287	0.98661	0.00048863	0.32292	0.00015993	495.26155229814987	84.558	0.86956	84.485	84.178	85.047	-0.072769					51	20	4	0	0	0	0.077175	1	10555	10555		118.74	33.582	1	1085200			73074	5692	51187	51268	79900	79900					0.012977401068042127
SLDDLLTNV	9	Unmodified	_SLDDLLTNV_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2611999511719	2	495.261122	988.507691	-0.35584	-0.00017624	0.62135	0.00030773	0.26551	0.00013149	495.2613520714052	84.485	0.8728	84.511	84.206	85.079	0.026558					44	20	3	0	0	0	0.071379	2	10508	10496;10508		120.87	21.996	1	1050700			73075	5692	51187	51268	79901;79902	79902					0.012977401068042127
SLDDLLTNV	9	Unmodified	_SLDDLLTNV_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2607116699219	2	495.261122	988.507691	0.22132	0.00010961	-0.20778	-0.0001029	0.013547	6.7094E-06	495.2609822740637	84.685	1.2554	84.482	84.081	85.336	-0.20329					82	29	5	0	0	0	0.013293	4	10217	10217;10227;10239;10252		195.06	71.34	1	3769500			73076	5692	51187	51268	79903;79904;79905;79906	79903					0.012977401068042127
SLDDLLTNV	9	Unmodified	_SLDDLLTNV_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2613830566406	2	495.261122	988.507691	0.77544	0.00038405	-0.77953	-0.00038607	-0.0040911	-2.0262E-06	495.2606168913804	84.58	1.1715	84.422	84.063	85.234	-0.15869					79	27	5	0	0	0	0.013924	4	10235	10225;10235;10247;10260		190.52	64.704	1	3451700			73077	5692	51187	51268	79907;79908;79909;79910	79908					0.012977401068042127
SLDDLLTNV	9	Unmodified	_SLDDLLTNV_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2612609863281	2	495.261122	988.507691	0.45391	0.0002248	-0.629	-0.00031152	-0.17509	-8.6716E-05	495.26075186559814	84.606	1.2601	84.468	84.108	85.368	-0.13788					71	29	4	0	0	0	0.013293	4	10231	10210;10219;10231;10245		190.52	71.775	1	3471800			73078	5692	51187	51268	79911;79912;79913;79914	79913					0.012977401068042127
SLDEIEQVI	9	Unmodified	_SLDEIEQVI_					0	0	0		ENSG00000149428|ENST00000617285|HYOU1;nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF	ENSG00000149428|ENST00000617285|HYOU1	ENSG00000149428|ENST00000617285|HYOU1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7505493164062	2	523.274229	1044.53391	-0.52359	-0.00027398	2.4	0.0012559	1.8764	0.0009819	523.2754426606125	39.567	0.87414	39.402	39.044	39.918	-0.16458					49	22	3	0	0	0	0.024374	1	3359	3359		40.778	0	1	899500			73079	6087	51188	51269	79915	79915					0.01342009278300793
SLDERPVAV	9	Unmodified	_SLDERPVAV_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;nc|ENSG00000204217|Q13873-2|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2700500488281	2	493.269281	984.52401	-1.2463	-0.00061475	0.4033	0.00019894	-0.84298	-0.00041581	493.26942103145126	44.547	0.80362	44.442	44.168	44.972	-0.10468					47	20	4	0	0	0	0.6238	1	4172	4172		51.193	13.381	1	1148700			73080	10313	51189	51270	79916	79916					0.031128660635772576
SLDERPVAV	9	Unmodified	_SLDERPVAV_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;nc|ENSG00000204217|Q13873-2|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2698059082031	2	493.269281	984.52401	-0.86781	-0.00042806	0.15938	7.8618E-05	-0.70843	-0.00034945	493.2693082031036	44.668	0.68655	44.457	44.184	44.871	-0.21109					48	17	4	0	0	0	0.32811	1	4177	4177		71.877	8.5712	1	1175400			73081	10313	51189	51270	79917	79917					0.031128660635772576
SLDERPVAV	9	Unmodified	_SLDERPVAV_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;nc|ENSG00000204217|Q13873-2|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.269281	984.52401	-0.77989	-0.0003847	0.332	0.00016377	-0.44789	-0.00022093	493.2694779273249	44.34	0.78719	44.34	43.8	44.587	0	-0.025627	-4.0925E-05	NaN	71.877	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1306300			73082	10313	51189	51270							0.031128660635772576
SLDERPVAV	9	Unmodified	_SLDERPVAV_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;nc|ENSG00000204217|Q13873-2|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.269281	984.52401	-1.1578	-0.00057112	1.0257	0.00050593	-0.13217	-6.5194E-05	493.2696606951276	44.274	0.98893	44.129	43.745	44.734	-0.14471	-0.23624	0.0006434	NaN	71.877	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864810			73083	10313	51189	51270							0.031128660635772576
SLDERPVAV	9	Unmodified	_SLDERPVAV_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;nc|ENSG00000204217|Q13873-2|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.269281	984.52401	-0.6762	-0.00033355	-0.033892	-1.6718E-05	-0.7101	-0.00035027	493.26909738746457	44.704	0.91295	44.458	44.185	45.098	-0.24509	0.093157	-0.00040189	NaN	71.877	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1077100			73084	10313	51189	51270							0.031128660635772576
SLDETTRAEY	10	Unmodified	_SLDETTRAEY_					0	0	0			REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.77685546875	2	592.775125	1183.5357	-0.30022	-0.00017796	3.7395	0.0022167	3.4393	0.0020387	592.7772458043714	81.363	1.3421	81.134	80.736	82.078	-0.2289					65	31	4	0	0	0	0.50517	1	9767	9767		87.696	5.3914	1	650320	+		73085	32118	51190	51271	79918	79918					-0.0487298170376107
SLDETTRAEY	10	Unmodified	_SLDETTRAEY_					0	0	0			REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	REV__ENST00000418510.1_1_22:26043331-26044389:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.7763061523438	2	592.775125	1183.5357	-0.49063	-0.00029083	3.8349	0.0022732	3.3443	0.0019824	592.7773574193878	81.364	1.0837	81.171	80.76	81.844	-0.19334					68	25	4	0	0	0	0.52982	1	9781	9781		84.916	10.66	1	594960	+		73086	32118	51190	51271	79919	79919					-0.0487298170376107
SLDFKEQVAE	10	Unmodified	_SLDFKEQVAE_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.2486572265625	2	583.290411	1164.56627	0.0096324	5.6185E-06	-2.5881	-0.0015096	-2.5784	-0.001504	583.7904843512015	81.049	1.7646	80.811	79.497	81.262	-0.23783					65	42	2	0	0	0	0.03519	1	9634	9634		52.937	0	1	78515			73087	1037	51191	51272	79920	79920					-0.009432033187067645
SLDKAYLKV	9	Unmodified	_SLDKAYLKV_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2420654296875	2	518.8055	1035.59645	0.28893	0.0001499	-0.66985	-0.00034752	-0.38092	-0.00019762	518.8047943256543	68.759	0.81682	68.528	68.195	69.012	-0.23047					35	19	3	0	0	0	0.024511	1	7986	7986		40.778	15.328	1	1044800	+		73088	20012	51192	51273	79921	79921					0.08007200137149084
SLDKESDSP	9	Unmodified	_SLDKESDSP_					0	0	0			REV__ENSG00000158615|ENST00000367188|PPP1R15B	REV__ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.7821350097656	2	489.224736	976.43492	0.15145	7.4095E-05	2.816	0.0013777	2.9674	0.0014517	489.2260705104749	40.4	0.36234	40.288	40.055	40.418	-0.11222					12	9	2	0	0	0	0.024418	1	3530	3530		37.812	0	1	161720	+		73089	25207	51193	51274	79922	79922					-0.05424013686604212
SLDKLLAPT	9	Unmodified	_SLDKLLAPT_					0	0	0			REV__ENST00000496823.1_1_3:187455030-187463237:-|nuORF	REV__ENST00000496823.1_1_3:187455030-187463237:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7821960449219	2	479.2844	956.554247	0.13388	6.4165E-05	0.32112	0.00015391	0.455	0.00021807	479.2844443296264	57.382	0.39422	57.18	56.926	57.32	-0.20208					15	10	2	0	0	0	0.024025	1	6286	6286		44.377	10.205	1	218100	+		73090	33837	51194	51275	79923	79923					0.07423224728779587
SLDKLLAPT	9	Unmodified	_SLDKLLAPT_					0	0	0			REV__ENST00000496823.1_1_3:187455030-187463237:-|nuORF	REV__ENST00000496823.1_1_3:187455030-187463237:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.2844	956.554247	-0.2644	-0.00012672	1.839	0.00088138	1.5746	0.00075466	479.2851061568811	57.089	0.52477	57.184	56.978	57.503	0.095306	-0.020333	0.0010859	NaN	44.377	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295570	+		73091	33837	51194	51275							0.07423224728779587
SLDKLLAPT	9	Unmodified	_SLDKLLAPT_					0	0	0			REV__ENST00000496823.1_1_3:187455030-187463237:-|nuORF	REV__ENST00000496823.1_1_3:187455030-187463237:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	479.2844	956.554247	-0.25388	-0.00012168	0.3781	0.00018122	0.12422	5.9538E-05	479.2844115164289	57.481	0.43361	57.247	56.952	57.386	-0.23363	0.042413	-0.00031443	NaN	44.377	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232700	+		73092	33837	51194	51275							0.07423224728779587
SLDLEDDTR	9	Unmodified	_SLDLEDDTR_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2255249023438	2	532.248743	1062.48293	-1.1507	-0.00061247	2.2749	0.0012108	1.1242	0.00059836	532.249975201723	27.506	0.2155	27.338	27.23	27.445	-0.16816					7	4	2	0	0	0	0.024466	1	1521	1521		31.53	0	1	50663			73093	5972	51195	51276	79924	79924					-0.045809397665834695
SLDLHTVLL	9	Unmodified	_SLDLHTVLL_					0	0	0			REV__ENSG00000100949|ENST00000216840|RABGGTA	REV__ENSG00000100949|ENST00000216840|RABGGTA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7716369628906	2	505.797675	1009.5808	-1.0948	-0.00055374	-1.5415	-0.0007797	-2.6363	-0.0013334	505.7967518809019	21.072	0.73614	21.072	20.801	21.537	0					30	14	3	0	0	0	0.024457	1	597	597		21.96	8.5058	1	251410	+		73094	21167	51196	51277	79925	79925					0.07638913620087351
SLDLLAVSL	9	Unmodified	_SLDLLAVSL_					0	0	0			REV__PRB1|p.A12D|1|0.12|ENSG00000251655|chr12:11355519-11355519|G/T|missense_variant	REV__PRB1|p.A12D|1|0.12|ENSG00000251655|chr12:11355519-11355519|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.77740478515625	2	465.778951	929.543348	-0.64033	-0.00029825	-2.3092	-0.0010756	-2.9496	-0.0013738	465.7778115254298	80.676	2.2634	80.676	79.077	81.341	0					120	54	3	0	0	0	0.75397	1	10127	10127		42.396	3.59	1	1014200	+		73095	37399	51197	51278	79926	79926					0.07575822354476713
SLDLLAVSL	9	Unmodified	_SLDLLAVSL_					0	0	0			REV__PRB1|p.A12D|1|0.12|ENSG00000251655|chr12:11355519-11355519|G/T|missense_variant	REV__PRB1|p.A12D|1|0.12|ENSG00000251655|chr12:11355519-11355519|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.77740478515625	2	465.778951	929.543348	-0.55999	-0.00026083	-4.3203	-0.0020123	-4.8803	-0.0022731	465.7766822638725	81.647	2.1767	81.647	81.258	83.435	0					127	51	3	0	0	0	0.02435	1	10127	10127		42.396	3.59	1	1363800	+		73096	37399	51197	51278	79927	79927					0.07575822354476713
SLDLLRKEL	9	Unmodified	_SLDLLRKEL_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.8359985351562	2	543.829506	1085.64446	-0.093557	-5.0879E-05	3.5905	0.0019526	3.4969	0.0019017	543.8313107157397	71.608	0.81389	71.333	71.056	71.87	-0.27509					55	19	4	0	0	0	0.30449	1	8387	8387		75.043	0.78827	1	3148200			73097	5239	51198	51279	79928	79928					0.10506274057183873
SLDLLTKLY	9	Unmodified	_SLDLLTKLY_					0	0	0		ENST00000599710.1_1_19:51503678-51504381:-|nuORF;nc|ENSG00000129455|O60259-2|KLK8	ENST00000599710.1_1_19:51503678-51504381:-|nuORF	ENST00000599710.1_1_19:51503678-51504381:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.297119140625	2	533.313158	1064.61176	-0.7443	-0.00039694	0.22531	0.00012016	-0.51899	-0.00027678	533.3131783677776	61.454	0.41513	61.196	61.008	61.423	-0.25725					20	9	3	0	0	0	0.024021	1	6855	6855		32.812	0	1	236220			73098	17495	51199	51280	79929	79929					0.08204066934331422
SLDLRKAF	8	Unmodified	_SLDLRKAF_					0	0	0			REV__ENSG00000148655|ENST00000611255|LRMDA	REV__ENSG00000148655|ENST00000611255|LRMDA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.2777099609375	2	475.276909	948.539266	4.405	0.0020936	-0.89127	-0.0004236	3.5138	0.00167	475.2763938913493	16.323	0.24923	16.323	16.211	16.461	0					15	9	2	0	0	0	1.0574	1	56	56		17.365	0	1	71271	+		73099	24629	51200	51281	79930	79930					0.06293777651421806
SLDNLKASV	9	Unmodified	_SLDNLKASV_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7627258300781	2	473.763832	945.513111	0.50601	0.00023973	-0.1576	-7.4667E-05	0.3484	0.00016506	473.763590582605	47.389	0.90328	47.389	47.003	47.906	0					62	26	3	0	0	0	0.072913	2	4749	4738;4749		120.31	29.705	1	3186400			73100	4972	51201	51282	79931;79932	79932					0.038174636892904346
SLDNLKASV	9	Unmodified	_SLDNLKASV_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.7624206542969	2	473.763832	945.513111	0.61377	0.00029078	-0.26989	-0.00012787	0.34388	0.00016292	473.76352266342786	47.576	0.80207	47.423	47.089	47.891	-0.15301					53	23	3	0	0	0	0.042502	2	4762	4745;4762		131.62	27.559	1	3265300			73101	4972	51201	51282	79933;79934	79934					0.038174636892904346
SLDNLKASV	9	Unmodified	_SLDNLKASV_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.7628173828125	2	473.763832	945.513111	-0.47244	-0.00022382	0.81575	0.00038647	0.34331	0.00016265	473.76404993364224	47.313	0.80552	47.372	46.995	47.8	0.059097					50	23	3	0	0	0	0.10482	2	4675	4675;4688		109.44	18.838	1	3679000			73102	4972	51201	51282	79935;79936	79935					0.038174636892904346
SLDQCHARAH	10	Unmodified	_SLDQCHARAH_					0	0	0			REV__nc|ENSG00000182196|Q66PJ3-4|ARL6IP4	REV__nc|ENSG00000182196|Q66PJ3-4|ARL6IP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2677001953125	2	569.264539	1136.51452	2.7675	0.0015754	2.9734	0.0016926	5.7409	0.0032681	569.2661420939212	18.62	2.7683	18.377	17.478	20.247	-0.24256					129	55	4	0	0	0	1.1266	1	334	334		29.17	2.4771	1	322430	+		73103	36991	51202	51283	79937	79937					-0.04827225493613696
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7508544921875	2	494.750921	987.48729	0.0043124	2.1336E-06	-0.51333	-0.00025397	-0.50902	-0.00025184	494.7506803403842	45.458	0.80534	45.458	45.147	45.953	0					80	23	5	0	0	0	0.012922	4	4406	4395;4406;4417;4436		199.7	60.879	1	29563000			73104	9307	51203	51284	79938;79939;79940;79941	79939					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7508850097656	2	494.750921	987.48729	-0.491	-0.00024292	0.061416	3.0386E-05	-0.42959	-0.00021254	494.7509513077415	45.548	0.77563	45.396	45.112	45.888	-0.15156					81	22	5	0	0	0	0.014475	4	4435	4395;4406;4418;4435		214.23	56.902	1	30792000			73105	9307	51203	51284	79942;79943;79944;79945	79945					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7508544921875	2	494.750921	987.48729	-0.16968	-8.395E-05	-0.24764	-0.00012252	-0.41732	-0.00020647	494.7508096396849	45.417	0.91702	45.461	45.074	45.991	0.043877					87	26	5	0	0	0	0.012922	4	4330	4330;4342;4354;4367		195.06	54.687	1	31030000			73106	9307	51203	51284	79946;79947;79948;79949	79946					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7508544921875	2	494.750921	987.48729	-0.37393	-0.000185	-0.083026	-4.1077E-05	-0.45695	-0.00022608	494.7508765162729	45.644	1.0381	45.547	45.257	46.295	-0.096649					83	28	4	0	0	0	0.015512	4	4348	4333;4348;4360;4373		159.28	45.864	1	16875000			73107	9307	51203	51284	79950;79951;79952;79953	79951					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.75091552734375	2	494.750921	987.48729	-0.11602	-5.7401E-05	-0.42387	-0.00020971	-0.53989	-0.00026711	494.75070739152943	45.8	1.1379	45.539	45.249	46.387	-0.26118					79	30	4	0	0	0	0.012922	4	4365	4350;4365;4377;4390		199.7	60.879	1	15399000			73108	9307	51203	51284	79954;79955;79956;79957	79955					-0.0069543055299163825
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7509765625	2	494.750921	987.48729	-0.76832	-0.00038013	0.22005	0.00010887	-0.54827	-0.00027126	494.7509910230923	45.713	1.0744	45.511	45.226	46.3	-0.20226					80	29	4	0	0	0	0.013924	2	4338	4338;4366		167.23	36.197	1	15574000			73109	9307	51203	51284	79958;79959	79958					-0.0069543055299163825
SLDRIFSK	8	Unmodified	_SLDRIFSK_					0	0	0			REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2925720214844	2	483.274367	964.53418	-0.34857	-0.00016846	0.52109	0.00025183	0.17252	8.3373E-05	483.27449064422603	58.15	0.50372	58.242	57.944	58.448	0.091217					24	13	2	0	0	0	0.027866	1	6450	6450		23.042	8.3784	1	969900	+		73110	21671	51204	51285	79960	79960					0.050494737888243435
SLDRIFSK	8	Unmodified	_SLDRIFSK_					0	0	0			REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.274367	964.53418	0.39537	0.00019107	-0.24018	-0.00011607	0.15519	7.4999E-05	483.27410206951106	58.323	0.40402	58.323	58.091	58.495	0	0.024978	-0.00045243	NaN	10.866	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1191700	+		73111	21671	51204	51285							0.050494737888243435
SLDRIFSK	8	Unmodified	_SLDRIFSK_					0	0	0			REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	REV__nc|ENSG00000107554|Q6XZF7-2|DNMBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.274367	964.53418	-0.34323	-0.00016587	0.53884	0.00026041	0.19561	9.4534E-05	483.27446731201604	58.516	0.4715	58.329	58.066	58.538	-0.18705	0.031317	0.00030053	NaN	10.866	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	986230	+		73112	21671	51204	51285							0.050494737888243435
SLDRSIAEV	9	Unmodified	_SLDRSIAEV_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.266357421875	2	495.266739	988.518924	-0.42409	-0.00021004	0.17869	8.8499E-05	-0.2454	-0.00012154	495.2668087799557	48.54	1.1927	48.607	48.265	49.458	0.066795					103	32	5	0	0	0	0.039744	1	4873	4873		133.81	0	1	10986000	+		73113	28263;19723	51205	51286	79961	79961					0.0242056220096174
SLDSTLHAV	9	Unmodified	_SLDSTLHAV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2757263183594	2	471.748182	941.481811	-0.73564	-0.00034704	1.6533	0.00077996	0.91769	0.00043292	471.74855266006	49.483	0.705	49.557	49.242	49.947	0.074196					65	18	5	0	0	0	0.024477	1	5030	5030		44.117	5.3107	1	2049100			73114	4728	51206	51287	79962	79962					0.00872890655205083
SLDSTLHAV	9	Unmodified	_SLDSTLHAV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.7485046386719	2	471.748182	941.481811	0.31635	0.00014924	-0.18863	-8.8987E-05	0.12771	6.0249E-05	471.74799177756216	49.611	0.98133	49.506	49.221	50.202	-0.10558					60	25	3	0	0	0	0.022311	3	4990	4990;5003;5018		147.69	63.568	1	5968300			73115	4728	51206	51287	79963;79964;79965	79963					0.00872890655205083
SLDSTLHAV	9	Unmodified	_SLDSTLHAV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.7481994628906	2	471.748182	941.481811	0.15567	7.3435E-05	-0.088918	-4.1947E-05	0.066748	3.1488E-05	471.74803134938884	49.882	0.90088	49.602	49.32	50.221	-0.27977					56	23	3	0	0	0	0.016838	4	5025	5016;5025;5039;5059		152.63	58.627	1	5831600			73116	4728	51206	51287	79966;79967;79968;79969	79967					0.00872890655205083
SLDSTLHAV	9	Unmodified	_SLDSTLHAV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.7476501464844	2	471.748182	941.481811	0.13386	6.3149E-05	-0.014561	-6.8693E-06	0.1193	5.628E-05	471.74807104765875	49.709	0.97767	49.528	49.268	50.245	-0.18071					58	25	3	0	0	0	0.014907	3	5001	5001;5015;5029		162.31	71.529	1	4967900			73117	4728	51206	51287	79970;79971;79972	79970					0.00872890655205083
SLDTKVGKIW	10	Unmodified	_SLDTKVGKIW_					0	0	0			REV__nc|ENSG00000170954|Q09FC8-4|ZNF415	REV__nc|ENSG00000170954|Q09FC8-4|ZNF415	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.8530883789062	2	573.829506	1145.64446	-0.13726	-7.8761E-05	0.81319	0.00046663	0.67593	0.00038787	573.8314265087076	64.108	0.2483	63.881	63.74	63.988	-0.22773					6	5	2	0	0	0	0.03519	1	7280	7280		44.377	10.205	1	78356	+		73118	36927	51207	51288	79973	79973					0.07746274057171831
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7916870117188	2	538.790381	1075.56621	-0.63828	-0.0003439	0.6183	0.00033314	-0.019976	-1.0763E-05	538.790503063793	59.026	0.9233	58.838	58.546	59.469	-0.18795					43	22	3	0	0	0	0.24462	3	6507	6507;6515;6529		115.49	51.287	1	3724800			73119	8677	51208	51289	79974;79975;79976	79974					0.03144841471953441
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.7908935546875	2	538.790381	1075.56621	-0.043759	-2.3577E-05	-0.3135	-0.00016891	-0.35726	-0.00019249	538.7901357128164	58.952	0.81009	58.771	58.466	59.276	-0.18134					32	19	2	0	0	0	0.14896	3	6494	6494;6502;6514		127.46	53.207	1	4595900			73120	8677	51208	51289	79977;79978;79979	79977					0.03144841471953441
SLDVGGPLRY	10	Unmodified	_SLDVGGPLRY_					0	0	0		ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7905883789062	2	538.790381	1075.56621	-0.23431	-0.00012624	0.075174	4.0503E-05	-0.15913	-8.574E-05	538.7902407521719	59.059	0.9619	58.817	58.502	59.463	-0.24165					43	23	3	0	0	0	0.14896	3	6505	6495;6505;6515		127.46	53.207	1	4328900			73121	8677	51208	51289	79980;79981;79982	79981					0.03144841471953441
SLDVIGWQ	8	Unmodified	_SLDVIGWQ_					0	0	0			REV__ENSG00000261221|ENST00000568956|ZNF865	REV__ENSG00000261221|ENST00000568956|ZNF865	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.9220275878906	2	459.239993	916.465432	-0.25164	-0.00011556	0.71151	0.00032675	0.45987	0.00021119	459.240156969508	25.484	1.0578	25.313	24.602	25.659	-0.17078					50	24	3	0	0	0	0.027866	1	1110	1110		24.203	11.244	1	277040	+		73122	29111	51209	51290	79983	79983					0.0038580948911430824
SLDVIGWQ	8	Unmodified	_SLDVIGWQ_					0	0	0			REV__ENSG00000261221|ENST00000568956|ZNF865	REV__ENSG00000261221|ENST00000568956|ZNF865	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	459.239993	916.465432	-0.55073	-0.00025292	0.65093	0.00029893	0.1002	4.6016E-05	459.240234085303	25.765	1.115	25.538	24.842	25.957	-0.22683	0.11222	-3.0467E-05	NaN	24.203	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354050	+		73123	29111	51209	51290							0.0038580948911430824
SLDVYELFL	9	Unmodified	_SLDVYELFL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7889404296875	2	549.789515	1097.56448	-0.47478	-0.00026103	2.095	0.0011518	1.6202	0.00089078	549.7895685366638	103.98	0.73563	103.98	103.7	104.44	0.0031433					46	18	4	0	0	0	0.62163	1	13301	13301		51.335	14.176	1	128850			73124	4004	51210	51291	79984	79984					0.01959787663327006
SLDVYELFL	9	Unmodified	_SLDVYELFL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.7905883789062	2	549.789515	1097.56448	-0.29861	-0.00016417	1.594	0.00087636	1.2954	0.00071219	549.7895062287301	104	0.65245	103.99	103.73	104.38	-0.0032196					32	15	3	0	0	0	0.27161	2	13261	13261;13273		79.451	13.554	1	128980			73125	4004	51210	51291	79985;79986	79985					0.01959787663327006
SLDVYRKLI	9	Unmodified	_SLDVYRKLI_					0	0	0		ENST00000553986.1_1_14:60616802-60619887:-|nuORF;ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	ENST00000553986.1_1_14:60616802-60619887:-|nuORF	ENST00000553986.1_1_14:60616802-60619887:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8296508789062	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	0.94809	1	10480	10480		29.15	1.2673	1	1623500			73126	2229	51211	51292	79987	79987					0.10094577919812764
SLDYAGYNN	9	Unmodified	_SLDYAGYNN_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1;ENSG00000130558|ENST00000371793|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.8030700683594	2	508.719621	1015.42469	0.3539	0.00018004	-1.1329	-0.00057631	-0.77896	-0.00039627	508.7191841398474	37.37	0.4395	37.37	37.12	37.559	0					22	11	3	0	0	0	0.024506	1	3008	3008		16.473	0.83134	1	169880			73127	18267	51212	51293	79988	79988					-0.08240576621187756
SLEAIWKLF	9	Unmodified	_SLEAIWKLF_					0	0	0		ENST00000262288.7_1_17:55083728-55083794:+|nuORF	ENST00000262288.7_1_17:55083728-55083794:+|nuORF	ENST00000262288.7_1_17:55083728-55083794:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8135375976562	2	553.815867	1105.61718	0.029142	1.6139E-05	-3.5644	-0.001974	-3.5353	-0.0019579	553.8138096486558	58.48	0.80201	58.292	58.023	58.825	-0.18787					33	19	3	0	0	0	0.20967	1	6413	6413		87.754	10.437	1	4929500			73128	11493	51213	51294	79989	79989					0.06859790516773501
SLEALQTI	8	Unmodified	_SLEALQTI_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.5292663574219	2	437.74765	873.480748	-0.25742	-0.00011269	2.2047	0.00096511	1.9473	0.00085242	437.7484691714138	31.58	0.70814	31.338	31.112	31.82	-0.24109					32	17	3	0	0	0	0.027866	1	2180	2180		32.812	0	1	286010			73129	2992	51214	51295	79990	79990					0.03894676286279264
SLEALQTI	8	Unmodified	_SLEALQTI_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	437.74765	873.480748	-0.24098	-0.00010549	2.264	0.00099105	2.023	0.00088556	437.7485211166525	31.449	0.54257	31.264	31.062	31.604	-0.18503	-0.05774	5.229E-05	NaN	32.812	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244540			73130	2992	51214	51295							0.03894676286279264
SLEAVRRKI	9	Unmodified	_SLEAVRRKI_					0	0	0		ENST00000558868.5_1_15:63340774-63353139:+|nuORF;nc|ENSG00000140416|P09493-5|TPM1	ENST00000558868.5_1_15:63340774-63353139:+|nuORF	ENST00000558868.5_1_15:63340774-63353139:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7694702148438	2	536.33529	1070.65603	-0.32756	-0.00017568	2.343	0.0012566	2.0154	0.0010809	536.336486648809	86.891	1.4478	86.85	85.994	87.442	-0.040695					78	33	3	0	0	0	0.023417	1	10924	10924		58.782	0	1	205500			73131	16762	51215	51296	79991	79991					0.12352515871180003
SLECKHVF	8	Unmodified	_SLECKHVF_					0	0	0		ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2853088378906	2	481.741845	961.469137	-0.19075	-9.1894E-05	-3.5675	-0.0017186	-3.7583	-0.0018105	481.7393683082944	55.024	0.35959	54.793	54.638	54.997	-0.23087					15	9	2	0	0	0	0.027866	1	5862	5862		40.573	17.53	1	99956			73132	8477	51216	51297	79992	79992					-0.01313844008700471
SLEDLKLK	8	Unmodified	_SLEDLKLK_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.28375244140625	2	473.2844	944.554247	0.044639	2.1127E-05	-0.94059	-0.00044517	-0.89595	-0.00042404	473.28384563148103	75.56	0.67691	75.287	75.06	75.737	-0.27266					24	16	2	0	0	0	0.4075	1	8933	8933		96.19	0	1	952990			73133	2053	51217	51298	79993	79993					0.07975224728761532
SLEEIMAAQP	10	Unmodified	_SLEEIMAAQP_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8134155273438	2	544.768257	1087.52196	-0.72929	-0.00039729	4.1272	0.0022484	3.3979	0.0018511	544.7705727383541	93.594	1.5539	93.594	92.294	93.848	0					55	36	2	0	0	0	0.03519	1	11871	11871		34.173	1.3601	1	123330			73134	3009	51218	51299	79994	79994					-0.01829930736539609
SLEELTRLA	9	Unmodified	_SLEELTRLA_					0	0	0		ENST00000563748.5_1_15:34652212-34654781:-|nuORF;ENSG00000176454|ENST00000314891|LPCAT4	ENST00000563748.5_1_15:34652212-34654781:-|nuORF	ENST00000563748.5_1_15:34652212-34654781:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2900390625	2	516.290214	1030.56587	-0.9972	-0.00051485	0.58057	0.00029974	-0.41663	-0.0002151	516.2901891729207	28.31	0.69265	28.065	27.842	28.534	-0.24524					29	16	3	0	0	0	0.59099	1	1646	1646		53.351	2.1588	1	763560			73135	8642	51219	51300	79995	79995					0.051814217520814054
SLEELWKT	8	Unmodified	_SLEELWKT_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.81378173828125	2	503.266207	1004.51786	0.533	0.00026824	-3.1807	-0.0016007	-2.6477	-0.0013325	503.76502931885	96.284	0.25401	96.29	96.186	96.44	0.0065079					7	5	2	0	0	0	0.027866	1	12244	12244		21.96	0	1	40726			73136	18142	51220	51301	79996	79996					0.01578347832048621
SLEENTKPP	9	Unmodified	_SLEENTKPP_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3283996582031	2	507.758746	1013.50294	-0.13385	-6.7962E-05	1.04	0.00052809	0.9062	0.00046013	507.7591519056094	33.709	0.51553	33.765	33.538	34.054	0.056572					19	12	2	0	0	0	0.024381	1	2371	2371		29.15	0	1	136770			73137	9482;18594	51221	51302	79997	79997					-0.003271440359526423
SLEFMNAIK	9	Unmodified	_SLEFMNAIK_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.774658203125	2	526.775885	1051.53722	-1.1266	-0.00059346	-0.83389	-0.00043927	-1.9605	-0.0010327	526.7752777963735	80.317	2.2658	80.317	78.993	81.258	0					116	54	3	0	0	0	0.26966	1	9978	9978		79.713	10.085	1	1152100	+		73138	22285	51222	51303	79998	79998					0.013509808512708332
SLEFSRTDL	9	Unmodified	_SLEFSRTDL_					0	0	0			REV__ENST00000576239.5_1_17:673624-673741:-|nuORF	REV__ENST00000576239.5_1_17:673624-673741:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2711791992188	2	534.272021	1066.52949	-0.3179	-0.00016985	0.34447	0.00018404	0.026569	1.4195E-05	534.2720119327935	59.394	1.004	59.48	59.206	60.21	0.085682					69	26	4	0	0	0	0.17822	1	6700	6700		93.195	8.0346	1	4563300	+		73139	35468	51223	51304	79999	79999					-0.0011145514461077255
SLEGGNMALA	10	Unmodified	_SLEGGNMALA_					0	0	0		nc|ENSG00000100095|Q9BYH1-4|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L;nc|ENSG00000100095|Q9BYH1-3|SEZ6L;nc|ENSG00000100095|Q9BYH1-5|SEZ6L;nc|ENSG00000100095|Q9BYH1-2|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.7326965332031	2	481.734217	961.453881	-0.46005	-0.00022162	-3.1997	-0.0015414	-3.6597	-0.001763	481.732670598193	57.163	2.8284	57.258	56.03	58.859	0.09531					182	77	5	0	0	0	0.34101	2	6346	6346;6372		104.75	8.6557	1	21019000			73140	2131	51224	51305	80000;80001	80000					-0.028387555965423417
SLEIDLHTF	9	Unmodified	_SLEIDLHTF_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7817993164062	2	537.776939	1073.53933	-0.47337	-0.00025457	3.292	0.0017704	2.8187	0.0015158	537.7784750821928	61.034	0.63951	60.828	60.62	61.259	-0.20599					24	15	2	0	0	0	0.024436	1	6830	6830		38.806	3.1879	1	489000	+		73141	27468	51225	51306	80002	80002					0.005497328607361851
SLEISAPKV	9	Unmodified	_SLEISAPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2952575683594	2	472.276575	942.538597	0.26608	0.00012566	4.3244	0.0020423	4.5905	0.002168	472.27889739179574	55.097	0.8091	54.947	54.676	55.485	-0.15036					30	22	2	0	0	0	0.024405	1	6077	6077		27.882	6.9353	1	984250			73142	4084	51226	51307	80003	80003					0.06502938211713172
SLEISAPKV	9	Unmodified	_SLEISAPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.276575	942.538597	0.40343	0.00019053	0.73472	0.00034699	1.1382	0.00053752	472.2766637785328	54.764	0.29021	54.862	54.626	54.916	0.098015	-0.091621	-0.001347	NaN	34.173	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	799310			73143	4084	51226	51307							0.06502938211713172
SLEKHKLF	8	Unmodified	_SLEKHKLF_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2919616699219	2	501.292559	1000.57057	-0.14252	-7.1443E-05	-0.49453	-0.00024791	-0.63705	-0.00031935	501.2922924646224	45.541	1.3563	45.442	44.828	46.184	-0.099445					111	37	4	0	0	0	0.43637	1	4362	4362		92.191	0	1	25794000			73144	1572	51227	51308	80004	80004					0.07030350685511166
SLEKHKLF	8	Unmodified	_SLEKHKLF_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29278564453125	2	501.292559	1000.57057	-0.18343	-9.1952E-05	-0.45726	-0.00022922	-0.64069	-0.00032117	501.29230887612056	45.679	1.1477	45.427	44.905	46.053	-0.25252					104	31	4	0	0	0	0.52467	1	4387	4387		83.287	6.4406	1	22111000			73145	1572	51227	51308	80005	80005					0.07030350685511166
SLEKHKLF	8	Unmodified	_SLEKHKLF_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2919921875	2	501.292559	1000.57057	-0.97205	-0.00048728	0.34167	0.00017127	-0.63038	-0.000316	501.2927162977392	45.644	1.4925	45.442	44.879	46.372	-0.20226					117	41	4	0	0	0	0.56067	1	4348	4348		79.939	0	1	23005000			73146	1572	51227	51308	80006	80006					0.07030350685511166
SLELDPPSL	9	Unmodified	_SLELDPPSL_					0	0	0		nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7587585449219	2	485.758215	969.501877	0.23249	0.00011294	0.08342	4.0522E-05	0.31591	0.00015346	485.7581322783421	72.037	1.5767	72.037	71.642	73.219	0					119	39	4	0	0	0	0.50848	1	8729	8729		58.782	0	1	5463500			73147	18739	51228	51309	80007	80007					0.015906415951349118
SLELDPPSL	9	Unmodified	_SLELDPPSL_					0	0	0		nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.7584533691406	2	485.758215	969.501877	-0.023976	-1.1647E-05	0.11178	5.4296E-05	0.0878	4.2649E-05	485.75811496833256	72.399	1.2238	72.122	71.828	73.051	-0.2769					78	28	4	0	0	0	0.12602	1	8471	8471		104.75	8.5561	1	1278300			73148	18739	51228	51309	80008	80008					0.015906415951349118
SLELDPPSL	9	Unmodified	_SLELDPPSL_					0	0	0		nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7585144042969	2	485.758215	969.501877	0.247	0.00011998	-0.16609	-8.0681E-05	0.080907	3.9301E-05	485.758006842451	72.415	1.3412	72.151	71.676	73.017	-0.26479					87	31	4	0	0	0	0.20967	2	8502	8480;8502		87.754	0	1	1662300			73149	18739	51228	51309	80009;80010	80010					0.015906415951349118
SLELDPPSL	9	Unmodified	_SLELDPPSL_					0	0	0		nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	nc|ENSG00000227011|F2Z3M2|LINC02876	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7583923339844	2	485.758215	969.501877	-0.16313	-7.9242E-05	0.13978	6.7898E-05	-0.023353	-1.1344E-05	485.75811211348827	72.279	1.253	72.081	71.666	72.919	-0.1981					81	29	4	0	0	0	0.4752	1	8469	8469		60.972	0	1	1645000			73150	18739	51228	51309	80011	80011					0.015906415951349118
SLELLDQIRNL	11	Unmodified	_SLELLDQIRNL_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.8751220703125	3	438.585632	1312.73507	0.16209	7.109E-05	2.069	0.00090745	2.2311	0.00097854	438.58647466807787	42.673	1.2601	42.534	41.914	43.174	-0.13929					99	35	5	0	0	0	0.02473	1	3911	3911		33.039	11.259	1	2798800	+		73151	27684	51229	51310	80012	80012					0.09120698314814035
SLELSHAEI	9	Unmodified	_SLELSHAEI_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.8089599609375	2	499.761289	997.508025	-0.18107	-9.049E-05	1.1543	0.00057685	0.97319	0.00048636	499.7612726989807	37.731	0.90717	37.552	37.128	38.035	-0.17929					50	24	3	0	0	0	0.024	1	3106	3106		37.159	0	1	642220	+		73152	20046	51230	51311	80013	80013					0.009171598266561887
SLEMYGVDLH	10	Unmodified	_SLEMYGVDLH_					0	0	0		ENST00000511405.1_1_5:111575355-111600594:-|nuORF;ENSG00000129595|ENST00000261486|EPB41L4A	ENST00000511405.1_1_5:111575355-111600594:-|nuORF	ENST00000511405.1_1_5:111575355-111600594:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.3582763671875	2	582.273706	1162.53286	3.9282	0.0022873	-0.47729	-0.00027791	3.4509	0.0020094	582.273137494613	17.685	0.59472	17.434	16.974	17.569	-0.25049					16	11	3	0	0	0	0.03519	1	140	140		10.866	0	1	14491			73153	4359	51231	51312	80014	80014					-0.04190528362278201
SLENVSGYY	9	Unmodified	_SLENVSGYY_					0	0	0		nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7091674804688	2	516.237647	1030.46074	-0.12431	-6.4173E-05	2.987	0.001542	2.8627	0.0014778	516.2390137155606	29.678	2.7236	29.529	28.285	31.009	-0.14952					138	64	3	0	0	0	0.024374	1	1828	1828		58.782	7.4465	1	374430			73154	18254	51232	51313	80015	80015					-0.053271194443368586
SLEPARALL	9	Unmodified	_SLEPARALL_					0	0	0		ENSG00000100422|ENST00000216264|CERK;ENST00000460254.1_1_22:47131346-47133979:-|nuORF	ENSG00000100422|ENST00000216264|CERK	ENSG00000100422|ENST00000216264|CERK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.28961181640625	2	485.290017	968.565481	0.015206	7.3795E-06	0.10368	5.0314E-05	0.11888	5.7693E-05	485.2899375033756	34.58	0.83198	34.356	34.033	34.865	-0.22412					52	20	4	0	0	0	0.25032	2	2561	2551;2561		82.305	2.854	1	2291300			73155	2200	51233	51314	80016;80017	80017					0.07994046822898326
SLEPLLLGS	9	Unmodified	_SLEPLLLGS_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.77117919921875	2	464.771126	927.527698	-0.059602	-2.7701E-05	1.4211	0.00066049	1.3615	0.00063278	464.7715479926418	34.568	1.2974	34.619	34.367	35.664	0.050255					73	33	4	0	0	0	0.62163	1	2534	2534		51.335	7.2187	1	1486300	+		73156	34248	51234	51315	80018	80018					0.06103535837428353
SLEPLLLGS	9	Unmodified	_SLEPLLLGS_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.771126	927.527698	-0.61	-0.00028351	1.7723	0.00082372	1.1623	0.00054021	464.7717465815049	34.623	0.79193	34.623	34.408	35.2	0	0.18568	0.00035375	NaN	51.335	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1515900	+		73157	34248	51234	51315							0.06103535837428353
SLEPLLLGS	9	Unmodified	_SLEPLLLGS_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	464.771126	927.527698	-0.23214	-0.00010789	1.3371	0.00062146	1.105	0.00051356	464.7715734392333	34.447	1.2651	34.442	34.261	35.526	-0.0045624	0.0051214	-5.0772E-05	NaN	51.335	63	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1592400	+		73158	34248	51234	51315							0.06103535837428353
SLEPLLLGS	9	Unmodified	_SLEPLLLGS_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	464.771126	927.527698	-0.059602	-2.7701E-05	1.4211	0.00066049	1.3615	0.00063278	464.7715479926418	34.568	1.2974	34.619	34.367	35.664	0.050255	0.18137	2.7289E-05	NaN	51.335	73	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1486300	+		73159	34248	51234	51315							0.06103535837428353
SLEPLLLGS	9	Unmodified	_SLEPLLLGS_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.771126	927.527698	0.050744	2.3584E-05	0.68464	0.0003182	0.73538	0.00034178	464.7715968124991	34.525	0.43823	34.301	34.142	34.58	-0.22412	-0.13641	-0.00065728	NaN	51.335	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182530	+		73160	34248	51234	51315							0.06103535837428353
SLEPLLLGS	9	Unmodified	_SLEPLLLGS_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.771126	927.527698	-0.20833	-9.6825E-05	3.9903	0.0018546	3.782	0.0017578	464.7718591499711	34.492	0.6491	34.285	34.082	34.731	-0.20695	-0.15272	0.0024155	NaN	51.335	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188880	+		73161	34248	51234	51315							0.06103535837428353
SLEPLLLGS	9	Unmodified	_SLEPLLLGS_					0	0	0			REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	REV__ENST00000518940.5_1_8:103855961-103870248:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.771126	927.527698	-0.69365	-0.00032239	1.4128	0.00065665	0.7192	0.00033426	464.77190270106587	34.53	0.60286	34.354	34.089	34.692	-0.17557	-0.08303	1.9616E-05	NaN	51.335	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211980	+		73162	34248	51234	51315							0.06103535837428353
SLEPQESQ	8	Unmodified	_SLEPQESQ_					0	0	0			REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.22503662109375	2	459.214172	916.413791	-0.3015	-0.00013845	-2.4781	-0.001138	-2.7796	-0.0012765	459.21253403966836	26.171	0.45104	26.003	25.737	26.188	-0.16816					15	13	2	0	0	0	0.027866	1	1348	1348		49.442	13.823	1	535980	+		73163	23883	51235	51316	80019	80019					-0.04775978995473906
SLEPQIQPV	9	Unmodified	_SLEPQIQPV_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENST00000485019.1_1_1:235323532-235324526:-|nuORF;ENST00000486751.5_1_1:235323638-235324580:-|nuORF;ENST00000475960.1_1_1:235324132-235324270:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.77752685546875	2	505.779482	1009.54441	-1.2075	-0.00061072	0.25318	0.00012805	-0.95431	-0.00048267	505.77938789066025	62.261	0.87053	62.261	61.941	62.811	0					36	25	2	0	0	0	0.2508	2	7241	7227;7241		82.241	16.437	1	2532200			73164	9744	51236	51317	80020;80021	80021					0.04002036723375113
SLEPQIQPV	9	Unmodified	_SLEPQIQPV_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENST00000485019.1_1_1:235323532-235324526:-|nuORF;ENST00000486751.5_1_1:235323638-235324580:-|nuORF;ENST00000475960.1_1_1:235324132-235324270:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.77978515625	2	505.779482	1009.54441	-1.1644	-0.00058894	-1.0764	-0.00054442	-2.2408	-0.0011334	505.77887366726713	62.526	0.81168	62.286	61.966	62.778	-0.23926					30	23	2	0	0	0	0.15366	2	7240	7240;7247		98.629	29.002	1	2889400			73165	9744	51236	51317	80022;80023	80022					0.04002036723375113
SLEPQIQPV	9	Unmodified	_SLEPQIQPV_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENST00000485019.1_1_1:235323532-235324526:-|nuORF;ENST00000486751.5_1_1:235323638-235324580:-|nuORF;ENST00000475960.1_1_1:235324132-235324270:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.77734375	2	505.779482	1009.54441	-1.0976	-0.00055514	-1.1329	-0.00057302	-2.2305	-0.0011282	505.7787828487958	62.177	0.7513	62.24	62.017	62.769	0.062763					36	19	2	0	0	0	0.15366	2	7149	7149;7167		98.629	18.917	1	2418200			73166	9744	51236	51317	80024;80025	80024					0.04002036723375113
SLEPQIQPV	9	Unmodified	_SLEPQIQPV_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENST00000485019.1_1_1:235323532-235324526:-|nuORF;ENST00000486751.5_1_1:235323638-235324580:-|nuORF;ENST00000475960.1_1_1:235324132-235324270:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.779482	1009.54441	-0.18094	-9.1516E-05	-2.7791	-0.0014056	-2.96	-0.0014971	505.7787581762929	62.47	0.58593	62.249	61.73	62.316	-0.22097	-0.016704	-0.0022306	NaN	98.629	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508880			73167	9744	51236	51317							0.04002036723375113
SLEPQIQPV	9	Unmodified	_SLEPQIQPV_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;nc|ENSG00000188739|P42696-2|RBM34;ENST00000476261.5_1_1:235316002-235324541:-|nuORF;ENST00000485019.1_1_1:235323532-235324526:-|nuORF;ENST00000486751.5_1_1:235323638-235324580:-|nuORF;ENST00000475960.1_1_1:235324132-235324270:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.779482	1009.54441	-0.90172	-0.00045607	0.14713	7.4416E-05	-0.75459	-0.00038166	505.7795054578684	62.476	0.38042	62.292	61.997	62.377	-0.18386	0.026781	0.00072946	NaN	98.629	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606840			73168	9744	51236	51317							0.04002036723375113
SLEPRRPE	8	Unmodified	_SLEPRRPE_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2666320800781	2	492.267073	982.519593	1.3774	0.00067803	-0.9994	-0.00049197	0.37796	0.00018606	492.26625660966	37.134	1.1452	37.134	36.724	37.869	0					75	30	4	0	0	0	0.56592	1	3011	3011		79.451	8.1553	1	12836000			73169	6841	51237	51318	80026	80026					0.027634016406636874
SLEPTHTLN	9	Unmodified	_SLEPTHTLN_					0	0	0		ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.8241882324219	2	506.258914	1010.50327	-0.18714	-9.4739E-05	0.80835	0.00040923	0.62121	0.00031449	506.2589155424762	42.978	0.43276	42.839	42.667	43.1	-0.13929					16	11	2	0	0	0	0.024405	1	4007	4007		35.618	14.671	1	134040			73170	12365	51238	51319	80027	80027					-0.0015572431609598425
SLEPWGWTD	9	Unmodified	_SLEPWGWTD_					0	0	0		ENST00000547698.5_1_12:49491303-49494191:-|nuORF	ENST00000547698.5_1_12:49491303-49494191:-|nuORF	ENST00000547698.5_1_12:49491303-49494191:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.817138671875	2	545.745639	1089.47673	-0.011931	-6.5111E-06	3.0792	0.0016804	3.0672	0.0016739	545.7473493322323	67.904	0.85817	67.67	67.261	68.119	-0.23375					38	20	2	0	0	0	0.024457	1	7788	7788		37.159	0	1	360560			73171	16538	51239	51320	80028	80028					-0.06443413207421145
SLEPWGWTD	9	Unmodified	_SLEPWGWTD_					0	0	0		ENST00000547698.5_1_12:49491303-49494191:-|nuORF	ENST00000547698.5_1_12:49491303-49494191:-|nuORF	ENST00000547698.5_1_12:49491303-49494191:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.816650390625	2	545.745639	1089.47673	-0.41854	-0.00022842	3.5461	0.0019353	3.1275	0.0017068	545.7475306602626	67.906	0.90764	67.668	67.201	68.109	-0.23814					37	21	2	0	0	0	0.024381	1	7770	7770		37.159	0	1	372730			73172	16538	51239	51320	80029	80029					-0.06443413207421145
SLEQHQRLF	9	Unmodified	_SLEQHQRLF_					0	0	0		ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.3070678710938	2	579.306729	1156.59891	-0.57677	-0.00033413	2.5288	0.0014649	1.952	0.0011308	579.307921966319	74.853	0.58273	74.589	74.361	74.944	-0.26326					21	13	2	0	0	0	0.62163	1	8846	8846		51.335	1.7994	1	378630			73173	8360	51240	51321	80030	80030					0.026870485947938505
SLERKPEL	8	Unmodified	_SLERKPEL_					0	0	0			REV__ENSG00000275591|ENST00000618742|XKR5	REV__ENSG00000275591|ENST00000618742|XKR5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2794189453125	2	486.279649	970.544745	-0.28902	-0.00014054	-0.28911	-0.00014059	-0.57813	-0.00028113	486.27951697616965	51.004	1.5073	50.854	50.1	51.608	-0.14916					138	43	6	0	0	0	0.77775	1	5392	5392		60.972	6.1956	1	26374000	+		73174	29191	51241	51322	80031	80031					0.05829456443234449
SLERQKPDIA	10	Unmodified	_SLERQKPDIA_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.2443237304688	2	578.81967	1155.62479	-0.88806	-0.00051402	3.6966	0.0021396	2.8085	0.0016256	579.324409483153	65.419	0.20275	65.168	65.027	65.229	-0.25112					5	4	2	0	0	0	0.03519	1	7465	7465		32.812	8.2932	1	61179	+		73175	28058	51242	51323	80032	80032					0.05319898046423077
SLETHTAL	8	Unmodified	_SLETHTAL_					0	0	0		ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	ENSG00000114650|ENST00000265565|SCAP	ENSG00000114650|ENST00000265565|SCAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.5471496582031	2	436.229625	870.444697	-0.68283	-0.00029787	1.1772	0.00051351	0.49433	0.00021564	436.2298081737445	29.759	0.50349	29.586	29.284	29.787	-0.17258					15	11	2	0	0	0	0.027866	1	1818	1818		13.775	0.81615	1	83119			73176	3374	51243	51324	80033	80033					0.0042921910941231545
SLEVEAGLP	9	Unmodified	_SLEVEAGLP_					0	0	0		ENST00000506165.1_1_5:139943324-139943944:-|nuORF;nc|ENSG00000113108|O95704-5|APBB3;nc|ENSG00000113108|O95704-6|APBB3;nc|ENSG00000113108|O95704-2|APBB3;ENSG00000113108|ENST00000357560|APBB3;nc|ENSG00000113108|O95704-3|APBB3;nc|ENSG00000113108|O95704-4|APBB3	ENST00000506165.1_1_5:139943324-139943944:-|nuORF	ENST00000506165.1_1_5:139943324-139943944:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2584533691406	2	457.745108	913.475663	0.11557	5.2903E-05	1.249	0.00057171	1.3645	0.00062461	457.7455183498536	61.724	0.85823	61.795	61.203	62.061	0.071125					37	22	2	0	0	0	0.024412	1	7018	7018		31.955	0	1	313610			73177	3262	51244	51325	80034	80034					0.015463724236610688
SLEVKLLQ	8	Unmodified	_SLEVKLLQ_					0	0	0		ENST00000530242.1_1_8:145748705-145749668:+|nuORF	ENST00000530242.1_1_8:145748705-145749668:+|nuORF	ENST00000530242.1_1_8:145748705-145749668:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.28680419921875	2	465.286943	928.559333	-0.23241	-0.00010814	-1.0854	-0.00050504	-1.3178	-0.00061317	465.2868513981878	75.517	2.1571	75.259	74.779	76.936	-0.25865					181	52	6	0	0	0	0.67154	1	9099	9099		69.628	0.8408	1	126510000			73178	16228	51245	51326	80035	80035					0.09219528591370363
SLEYLTLID	9	Unmodified	_SLEYLTLID_					0	0	0			REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF	REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7745361328125	2	533.786973	1065.55939	-0.53748	-0.0002869	4.4714	0.0023868	3.9339	0.0020999	533.7900657688448	47.795	0.22456	47.698	47.63	47.855	-0.097553					7	5	2	0	0	0	0.024457	1	4727	4727		29.15	4.6304	1	131400	+		73179	20566	51246	51327	80036	80036					0.02923483800714166
SLFAVLEEN	9	Unmodified	_SLFAVLEEN_					0	0	0			REV__ENSG00000015532|ENST00000017003|XYLT2	REV__ENSG00000015532|ENST00000017003|XYLT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.26312255859375	2	511.263665	1020.51278	0.15465	7.9066E-05	-0.39149	-0.00020015	-0.23684	-0.00012109	511.26331619801516	74.893	0.87198	74.617	74.352	75.224	-0.27573					41	20	3	0	0	0	0.39228	1	8825	8825		66.429	3.123	1	1318200	+		73180	19970	51247	51328	80037	80037					0.0033404396941705272
SLFDLNFQA	9	Unmodified	_SLFDLNFQA_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.7636108398438	2	527.763832	1053.51311	-1.8001	-0.00095004	2.1343	0.0011264	0.33419	0.00017638	527.7646287668755	92.812	1.1122	92.668	92.325	93.437	-0.14356					60	25	4	0	0	0	0.013065	3	11399	11399;11411;11423		171.53	49.356	1	1062700			73181	9018	51248	51329	80038;80039;80040	80038					-0.011505363107289668
SLFDLNFQA	9	Unmodified	_SLFDLNFQA_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.7637329101562	2	527.763832	1053.51311	-0.26855	-0.00014173	0.41015	0.00021646	0.1416	7.4732E-05	527.7637538154617	92.822	1.0282	92.699	92.382	93.41	-0.12241					58	23	4	0	0	0	0.013065	3	11423	11413;11423;11435		185.55	37.507	1	1046400			73182	9018	51248	51329	80041;80042;80043	80042					-0.011505363107289668
SLFDLNFQA	9	Unmodified	_SLFDLNFQA_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.7637329101562	2	527.763832	1053.51311	0.083719	4.4184E-05	0.62207	0.00032831	0.70579	0.00037249	527.7635366888229	92.928	1.1983	92.784	92.328	93.526	-0.14411					65	27	4	0	0	0	0.013065	3	11409	11409;11420;11433		171.53	36.721	1	1179400			73183	9018	51248	51329	80044;80045;80046	80044					-0.011505363107289668
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_		SLFEEM(1)LQV		SLFEEM(180)LQV	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	556.2702026367188	2	556.270632	1110.52671	0.0042592	2.3693E-06	-0.40099	-0.00022306	-0.39673	-0.00022069	556.2703171301632	78.062	0.82126	78.062	77.752	78.573	0					37	19	2	0	0	0	0.013293	2	9653	9653;9665		176.09	62.675	1	2134300			73184	2252	51249	51330	80047;80048	80047		88			-0.024130465938014822
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_		SLFEEM(1)LQV		SLFEEM(190)LQV	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	556.270751953125	2	556.270632	1110.52671	0.58409	0.00032491	-1.0636	-0.00059162	-0.47947	-0.00026671	556.2699409659541	78.176	0.99252	77.984	77.723	78.716	-0.1921					43	23	2	0	0	0	0.015064	2	9647	9635;9647		221.33	91.644	1	1981000			73185	2252	51249	51330	80049;80050	80050		88			-0.024130465938014822
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_		SLFEEM(1)LQV		SLFEEM(240)LQV	0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.2706298828125	2	556.270632	1110.52671	-0.23712	-0.0001319	-0.11668	-6.4908E-05	-0.35381	-0.00019681	556.2705156259933	78.063	1.3275	78.079	77.78	79.107	0.015907					46	31	2	0	0	0	0.0089939	2	9577	9577;9588		237.81	115.64	1	2142400			73186	2252	51249	51330	80051;80052	80051		88			-0.024130465938014822
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_					0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.270632	1110.52671	-0.34381	-0.00019125	0.0091556	5.093E-06	-0.33466	-0.00018616	556.2706087345442	78.275	0.68459	78.02	77.743	78.427	-0.25471	-0.054858	0.0005475	NaN	237.81	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517910			73187	2252	51249	51330				88			-0.024130465938014822
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_					0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	556.270632	1110.52671	0.44483	0.00024744	-0.62598	-0.00034821	-0.18115	-0.00010077	556.2701749839853	78.216	0.8111	77.984	77.709	78.52	-0.23141	-0.090396	-0.00015911	NaN	237.81	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453410			73188	2252	51249	51330				88			-0.024130465938014822
SLFEEMLQV	9	Oxidation (M)	_SLFEEM(Oxidation (M))LQV_					0	0	1		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	556.270632	1110.52671	-0.10674	-5.9377E-05	-5.8886	-0.0032756	-5.9953	-0.003335	556.7688228602229	78.474	0.25978	78.318	78.254	78.514	-0.15591	0.24373	-0.0060139	NaN	237.81	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43932			73189	2252	51249	51330				88			-0.024130465938014822
SLFEEMLQV	9	Unmodified	_SLFEEMLQV_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	548.2734375	2	548.273175	1094.5318	-0.3407	-0.0001868	0.66691	0.00036565	0.32621	0.00017885	548.273364346602	95.21	0.98901	95.213	94.87	95.859	0.0033798					57	22	4	0	0	0	0.03666	2	12102	12089;12102		136.27	55.813	1	1620500			73190	2252	51249	51331	80053;80054	80054					-0.011687427311699139
SLFEEMLQV	9	Unmodified	_SLFEEMLQV_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	548.2734375	2	548.273175	1094.5318	-0.30617	-0.00016787	0.56929	0.00031213	0.26312	0.00014426	548.2733453047864	95.319	1.0328	95.323	94.922	95.955	0.0041199					64	23	4	0	0	0	0.013887	1	12072	12072		180.93	72.838	1	1680000			73191	2252	51249	51331	80055	80055					-0.011687427311699139
SLFEEMLQV	9	Unmodified	_SLFEEMLQV_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.273681640625	2	548.273175	1094.5318	0.45422	0.00024904	-0.47229	-0.00025895	-0.018076	-9.9104E-06	548.2726515574178	95.213	0.65303	95.091	94.812	95.465	-0.12251					34	14	3	0	0	0	0.053401	1	11759	11759		127.46	23.448	1	710570			73192	2252	51249	51331	80056	80056					-0.011687427311699139
SLFEGTWYL	9	Unmodified	_SLFEGTWYL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.2736206054688	2	558.274032	1114.53351	-0.29925	-0.00016707	0.51463	0.00028731	0.21538	0.00012024	558.2742385097243	96.407	0.93871	96.407	96.075	97.014	0					56	21	4	0	0	0	0.034181	2	12300	12300;12312		138.24	69.455	1	695340			73193	3253	51250	51332	80057;80058	80057					-0.019173656509110515
SLFEGTWYL	9	Unmodified	_SLFEGTWYL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.27392578125	2	558.274032	1114.53351	1.1637	0.00064968	-0.99408	-0.00055497	0.16965	9.471E-05	558.2733814763305	96.408	1.1171	96.41	96.076	97.193	0.0020676					68	25	4	0	0	0	0.096521	2	12218	12218;12235		111.65	37.674	1	603780			73194	3253	51250	51332	80059;80060	80059					-0.019173656509110515
SLFEGTWYL	9	Unmodified	_SLFEGTWYL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2737426757812	2	558.274032	1114.53351	0.31363	0.00017509	-0.12217	-6.8202E-05	0.19147	0.00010689	558.2738803188736	96.218	1.1122	96.081	95.767	96.88	-0.1367					72	25	4	0	0	0	0.013805	4	11867	11867;11879;11890;11920		167.82	80.07	1	1475900			73195	3253	51250	51332	80061;80062;80063;80064	80061					-0.019173656509110515
SLFEGTWYL	9	Unmodified	_SLFEGTWYL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2738037109375	2	558.274032	1114.53351	0.76724	0.00042833	-0.60217	-0.00033618	0.16507	9.2154E-05	558.2736113548574	96.234	1.246	96.111	95.728	96.974	-0.12305					84	28	4	0	0	0	0.013805	6	11903	11879;11891;11903;11917;11929;11941		183.89	85.584	1	2524500			73196	3253	51250	51332	80065;80066;80067;80068;80069;80070	80067					-0.019173656509110515
SLFEGTWYL	9	Unmodified	_SLFEGTWYL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2739868164062	2	558.274032	1114.53351	-0.44125	-0.00024634	0.32568	0.00018182	-0.11557	-6.4521E-05	558.2741161037764	96.295	1.2059	96.138	95.794	97	-0.15646					84	27	4	0	0	0	0.013805	6	11886	11864;11874;11886;11898;11911;11926		167.82	88.373	1	2543600			73197	3253	51250	51332	80071;80072;80073;80074;80075;80076	80073					-0.019173656509110515
SLFEGTWYL	9	Unmodified	_SLFEGTWYL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.274032	1114.53351	0.37232	0.00020786	-0.27065	-0.0001511	0.10167	5.6757E-05	558.2737784420264	96.31	0.84526	96.317	95.947	96.793	0.0065002	0.072892	-0.00013943	NaN	167.82	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581120			73198	3253	51250	51332							-0.019173656509110515
SLFEKELEY	9	Unmodified	_SLFEKELEY_					0	0	0			REV__ENSG00000143674|ENST00000366624|MAP3K21	REV__ENSG00000143674|ENST00000366624|MAP3K21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.2894287109375	2	579.289879	1156.56521	0.40647	0.00023546	-0.6531	-0.00037834	-0.24664	-0.00014287	579.2894549393473	79.189	1.9953	78.937	78.56	80.555	-0.25159					113	47	4	0	0	0	0.31037	1	9483	9483		74.255	2.3776	1	5594900	+		73199	24274	51251	51333	80077	80077					-0.0068141768761051935
SLFEKELEY	9	Unmodified	_SLFEKELEY_					0	0	0			REV__ENSG00000143674|ENST00000366624|MAP3K21	REV__ENSG00000143674|ENST00000366624|MAP3K21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.2883911132812	2	579.289879	1156.56521	-0.37525	-0.00021738	0.20745	0.00012018	-0.1678	-9.7203E-05	579.2899219562338	79.156	1.7122	78.937	78.532	80.244	-0.21923					114	40	5	0	0	0	0.31037	1	9504	9504		74.255	0	1	5806000	+		73200	24274	51251	51333	80078	80078					-0.0068141768761051935
SLFERLVKV	9	Unmodified	_SLFERLVKV_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7296142578125	2	545.834591	1089.65463	-0.5939	-0.00032417	0.048522	2.6485E-05	-0.54538	-0.00029769	545.8345628590064	61.839	0.5952	61.581	61.342	61.937	-0.25725					22	14	2	0	0	0	0.024495	1	6909	6909		34.173	8.5985	1	361290			73201	4022	51252	51334	80079	80079					0.11338881782398857
SLFERLVVL	9	Unmodified	_SLFERLVVL_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1	ENSG00000005007|ENST00000262803|UPF1	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3294677734375	2	538.329142	1074.64373	-1.4012	-0.00075432	1.3124	0.00070652	-0.088788	-4.7797E-05	538.3296849235649	81.713	0.80918	81.57	81.275	82.084	-0.14248					45	18	4	0	0	0	0.30449	1	9819	9819		75.043	6.5586	1	773600			73202	756	51253	51335	80080	80080					0.10939479408125408
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.26617431640625	2	454.26601	906.517468	0.067274	3.056E-05	-0.20912	-9.4996E-05	-0.14185	-6.4436E-05	454.2658649840877	63.157	1.6486	63.157	62.811	64.46	0					110	44	5	0	0	0	0.053401	3	7363	7353;7363;7399		127.46	15.813	1	20337000			73203	8017	51254	51336	80081;80082;80083	80082					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.2662658691406	2	454.26601	906.517468	0.18013	8.1825E-05	-0.23805	-0.00010814	-0.057929	-2.6315E-05	454.2658514238575	63.354	1.7777	63.102	62.766	64.544	-0.25141					113	47	5	0	0	0	0.027092	4	7353	7353;7361;7373;7385		143.89	31.271	1	17489000			73204	8017	51254	51336	80084;80085;80086;80087	80084					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.26593017578125	2	454.26601	906.517468	1.3692	0.00062197	-1.4939	-0.00067862	-0.12471	-5.665E-05	454.2652811108138	63.102	1.735	63.156	62.76	64.495	0.054104					110	46	5	0	0	0	0.053401	1	7302	7302		127.46	19.374	1	15933000			73205	8017	51254	51336	80088	80088					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.2659912109375	2	454.26601	906.517468	0.16827	7.6438E-05	-0.33377	-0.00015162	-0.16551	-7.5184E-05	454.26580709330284	63.343	1.8518	63.122	62.691	64.543	-0.22098					123	46	5	0	0	0	0.053401	4	7165	7141;7153;7165;7178		127.46	24.688	1	18494000			73206	8017	51254	51336	80089;80090;80091;80092	80091					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.2660827636719	2	454.26601	906.517468	-0.18952	-8.6093E-05	0.017387	7.8984E-06	-0.17213	-7.8195E-05	454.2659720125718	63.321	1.7727	63.137	62.746	64.519	-0.18386					126	44	5	0	0	0	0.086035	3	7150	7150;7162;7176		115.49	22.299	1	19236000			73207	8017	51254	51336	80093;80094;80095	80093					0.06046972902856851
SLFGKDIK	8	Unmodified	_SLFGKDIK_					0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.2662658691406	2	454.26601	906.517468	0.18013	8.1825E-05	-0.23805	-0.00010814	-0.057929	-2.6315E-05	454.2658514238575	63.354	1.7777	63.102	62.766	64.544	-0.25141					113	47	5	0	0	0	0.32941	1	7398	7398		107.01	2.261	1	17489000			73208	8551	51255	51337	80096	80096					0.06046972902845482
SLFHPFTSP	9	Unmodified	_SLFHPFTSP_					0	0	0			REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF	REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2772216796875	2	516.761092	1031.50763	-1.0678	-0.0005518	-2.9074	-0.0015024	-3.9752	-0.0020542	516.7594066200243	28.183	0.77104	28.183	27.884	28.655	0					37	18	3	0	0	0	0.024541	1	1671	1671		11.511	0	1	524880	+		73209	35853	51256	51338	80097	80097					-0.006862151025416097
SLFIGEKAVLL	11	Unmodified	_SLFIGEKAVLL_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	595.361083984375	2	595.363182	1188.71181	-0.89204	-0.00053109	0.97966	0.00058325	0.087621	5.2166E-05	595.3637901314213	77.128	0.95585	76.917	76.749	77.705	-0.21087					44	22	3	0	0	0	0.53345	1	9487	9487		74.165	22.637	1	466840			73210	9744	51257	51339	80098	80098					0.12500304268132822
SLFILSGRD	9	Unmodified	_SLFILSGRD_					0	0	0		ENST00000532739.1_1_16:16459039-16460653:+|nuORF	ENST00000532739.1_1_16:16459039-16460653:+|nuORF	ENST00000532739.1_1_16:16459039-16460653:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.28106689453125	2	504.279649	1006.54475	0.13162	6.6372E-05	2.8733	0.0014489	3.0049	0.0015153	504.2808011091861	93.739	2.7312	93.616	92.341	95.072	-0.12215					104	63	3	0	0	0	0.32811	1	11545	11545		71.877	2.2498	1	901480			73211	16298	51258	51340	80099	80099					0.04173456443231771
SLFKDGKL	8	Unmodified	_SLFKDGKL_					0	0	0		ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	ENSG00000144591|ENST00000313597|GMPPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.2659606933594	2	454.26601	906.517468	0.34886	0.00015848	-0.53664	-0.00024378	-0.18777	-8.53E-05	454.26572077395105	63.424	1.7052	63.166	62.835	64.54	-0.25824					114	43	4	0	0	0	0.27973	1	7175	7175		120.62	1.8779	1	17842000			73212	5751	51259	51341	80100	80100					0.06046972902856851
SLFKEASNVTM	11	Unmodified	_SLFKEASNVTM_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.5392761230469	3	409.541034	1225.60127	0.7157	0.00029311	-3.1553	-0.0012922	-2.4396	-0.00099913	409.5397082062947	19.978	0.58437	19.754	19.533	20.117	-0.22344					20	11	2	0	0	0	1.017	1	469	469		33.039	5.3955	1	240940	+		73213	36740	51260	51342	80101	80101					-0.0025028378242950566
SLFKEASNVTM	11	Unmodified	_SLFKEASNVTM_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	409.541034	1225.60127	0.32332	0.00013241	-2.7936	-0.0011441	-2.4702	-0.0010117	409.53978244106366	19.863	0.72413	19.702	19.43	20.154	-0.16079	-0.032342	0.00067893	NaN	33.039	31	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268500	+		73214	36740	51260	51342							-0.0025028378242950566
SLFKEASNVTM	11	Unmodified	_SLFKEASNVTM_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-6|CDC42BPA	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	409.541034	1225.60127	0.7157	0.00029311	-3.1553	-0.0012922	-2.4396	-0.00099913	409.5397082062947	19.978	0.58437	19.754	19.533	20.117	-0.22344	0.019596	0.00023446	NaN	33.039	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240940	+		73215	36740	51260	51342							-0.0025028378242950566
SLFKPFLA	8	Unmodified	_SLFKPFLA_					0	0	0		ENST00000507925.1_1_4:25395483-25396777:+|nuORF	ENST00000507925.1_1_4:25395483-25396777:+|nuORF	ENST00000507925.1_1_4:25395483-25396777:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.773681640625	2	461.773471	921.53239	-0.0097261	-4.4912E-06	0.17299	7.9882E-05	0.16326	7.5391E-05	461.7734012798388	101.96	0.89851	101.97	101.65	102.55	0.0073471					40	20	3	0	0	0	0.99042	1	13013	13013		38.806	0	1	969980			73216	15773	51261	51343	80102	80102					0.06848464770837381
SLFKRLYSL	9	Unmodified	_SLFKRLYSL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2686767578125	2	563.834591	1125.65463	0.64093	0.00036138	-1.0535	-0.000594	-0.41258	-0.00023263	563.8338281879527	59.632	0.72263	59.456	59.199	59.922	-0.1761					46	18	4	0	0	0	0.024473	1	6620	6620		49.536	15.364	1	1481700			73217	10867	51262	51344	80103	80103					0.0968288178239618
SLFKVFGDI	9	Unmodified	_SLFKVFGDI_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2880859375	2	513.286943	1024.55933	-0.16287	-8.3599E-05	-3.8852	-0.0019942	-4.0481	-0.0020778	513.2848771274909	55.517	1.1104	55.361	55.027	56.138	-0.15601					47	30	2	0	0	0	0.18915	1	6137	6137		90.777	3.0224	1	5630900	+		73218	19953	51263	51345	80104	80104					0.04803528591378381
SLFLDSPVSSV	11	Unmodified	_SLFLDSPVSSV_					0	0	0		ENST00000593726.5_1_19:41305451-41305802:+|nuORF	ENST00000593726.5_1_19:41305451-41305802:+|nuORF	ENST00000593726.5_1_19:41305451-41305802:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	574.8361206054688	2	575.803154	1149.59175	-0.68052	-0.00039184	2.1576	0.0012423	1.477	0.00085049	576.3058280306441	51.734	0.44057	51.587	51.336	51.777	-0.14735					16	12	2	0	0	0	0.024741	1	5469	5469		23.523	0	1	196630			73219	17395	51264	51346	80105	80105					0.02294271203709286
SLFLDSPVSSV	11	Unmodified	_SLFLDSPVSSV_					0	0	0		ENST00000593726.5_1_19:41305451-41305802:+|nuORF	ENST00000593726.5_1_19:41305451-41305802:+|nuORF	ENST00000593726.5_1_19:41305451-41305802:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	575.803154	1149.59175	0.43193	0.00024871	0.41455	0.0002387	0.84649	0.00048741	576.3062270859255	51.791	0.14516	51.607	51.524	51.669	-0.18404	0.013523	-0.00076716	NaN	42.864	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61765			73220	17395	51264	51346							0.02294271203709286
SLFLNPLYI	9	Unmodified	_SLFLNPLYI_					0	0	0			REV__ENST00000379671.7_1_5:111065749-111065935:-|nuORF	REV__ENST00000379671.7_1_5:111065749-111065935:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.3094482421875	2	540.310418	1078.60628	-0.11131	-6.0142E-05	0.1045	5.6462E-05	-0.006811	-3.6801E-06	540.3102901938151	105.34	0.82503	105.34	105.06	105.89	0					35	22	2	0	0	0	0.43973	1	13520	13520		63.306	2.3343	1	1127800	+		73221	31441	51265	51347	80106	80106					0.07012388142516102
SLFLPKVDA	9	Unmodified	_SLFLPKVDA_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2866516113281	2	495.286943	988.559333	-0.44535	-0.00022057	0.77243	0.00038258	0.32709	0.000162	495.28721037586297	67.415	1.0301	67.177	66.838	67.868	-0.23814					66	24	4	0	0	0	0.62163	1	7775	7775		51.335	1.8939	1	5072900	+		73222	27624;37007	51266	51348	80107	80107					0.06459528591358321
SLFLPMPK	8	Unmodified	_SLFLPMPK_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7315368652344	2	466.767332	931.52011	-0.89358	-0.0004171	-2.876	-0.0013424	-3.7696	-0.0017595	466.76564746083244	60.183	0.45549	60.262	59.974	60.429	0.078888					17	11	2	0	0	0	0.027866	1	6834	6834		30.504	0	1	177770			73223	4950	51267	51349	80108	80108					0.051611050361543676
SLFLSRLDL	9	Unmodified	_SLFLSRLDL_					0	0	0			REV__ENST00000577164.1_1_17:1617268-1619543:-|nuORF	REV__ENST00000577164.1_1_17:1617268-1619543:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.3116455078125	2	532.310949	1062.60735	-0.47742	-0.00025413	1.2375	0.00065873	0.76008	0.0004046	532.3113159430982	70.934	0.88735	70.677	70.439	71.327	-0.25713					41	21	3	0	0	0	0.2101	1	8270	8270		87.696	0	1	782850	+		73224	35474	51268	51350	80109	80109					0.07854602511406483
SLFLVIIPT	9	Unmodified	_SLFLVIIPT_					0	0	0			REV__ENSG00000197658|ENST00000612278|SLC22A24	REV__ENSG00000197658|ENST00000612278|SLC22A24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7830505371094	2	501.815336	1001.61612	-0.30228	-0.00015169	-3.596	-0.0018045	-3.8983	-0.0019562	501.81364658983847	44.261	0.16415	44.298	44.176	44.34	0.0369					6	4	2	0	0	0	0.024436	1	4133	4133		23.042	8.1776	1	93351	+		73225	28336	51269	51351	80110	80110					0.11537576147884465
SLFNSFYM	8	Unmodified	_SLFNSFYM_					0	0	0		sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	sp|P03227|DNBI_EBVB9MajorDNA-bindingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=DBPPE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7696533203125	2	504.728403	1007.44225	0.4095	0.00020668	-1.3122	-0.00066228	-0.90265	-0.0004556	504.7277009056165	43.033	0.46993	43.064	42.759	43.229	0.030827					20	12	2	0	0	0	0.027866	1	3960	3960		47.916	0	1	231180			73226	37935	51270	51352	80111	80111					-0.06116952619879612
SLFPAELAL	9	Unmodified	_SLFPAELAL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7734069824219	2	480.773668	959.532783	0.41664	0.00020031	-0.066441	-3.1943E-05	0.35019	0.00016836	480.7735031096673	93.45	1.6349	93.45	92.412	94.047	0					63	38	2	0	0	0	0.039744	2	11866	11866;11878		133.81	9.2184	1	1647100			73227	7474	51271	51353	80112;80113	80112					0.05139839700018456
SLFPAELAL	9	Unmodified	_SLFPAELAL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.77313232421875	2	480.773668	959.532783	-0.28553	-0.00013727	0.71768	0.00034504	0.43215	0.00020777	480.7738005812179	93.406	1.2145	93.402	92.733	93.947	-0.0042038					60	28	3	0	0	0	0.072054	2	11825	11825;11838		120.62	8.9727	1	1500400			73228	7474	51271	51353	80114;80115	80114					0.05139839700018456
SLFPAELAL	9	Unmodified	_SLFPAELAL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.773668	959.532783	-0.95318	-0.00045826	1.7643	0.00084821	0.81108	0.00038995	480.77391634618215	93.28	1.2744	93.14	92.21	93.484	-0.13995	-0.16489	0.0013851	NaN	133.81	38	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81948			73229	7474	51271	51353							0.05139839700018456
SLFPAELAL	9	Unmodified	_SLFPAELAL_					0	0	0		ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	ENSG00000165832|ENST00000298746|TRUB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.773668	959.532783	0.22713	0.0001092	0.43049	0.00020697	0.65762	0.00031617	480.77340612105803	93.37	0.6973	93.226	92.785	93.483	-0.1441	-0.078753	0.00010257	NaN	133.81	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104390			73230	7474	51271	51353							0.05139839700018456
SLFPFFPPI	9	Unmodified	_SLFPFFPPI_					0	0	0		ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.323974609375	2	532.794404	1063.57425	-0.67118	-0.0003576	-4.0177	-0.0021406	-4.6889	-0.0024982	533.2941869557051	72.763	0.41956	72.763	72.533	72.952	0					15	9	2	0	0	0	0.024487	1	8850	8850		31.955	15.482	1	104040			73231	12790	51272	51354	80116	80116					0.04501020459360916
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2867126464844	2	495.286943	988.559333	0.098235	4.8654E-05	-0.32089	-0.00015894	-0.22266	-0.00011028	495.2867927615451	67.123	2.1847	67.123	66.714	68.898	0					130	55	5	0	0	0	0.062622	4	8002	7990;8002;8026;8038		124.08	28.265	1	21018000			73232	8768	51273	51355	80117;80118;80119;80120	80118					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2872009277344	2	495.286943	988.559333	-0.13546	-6.7092E-05	-0.29395	-0.00014559	-0.42941	-0.00021268	495.28680979725357	67.491	1.8866	67.203	66.791	68.678	-0.28834					134	47	6	0	0	0	0.18994	5	8021	8001;8009;8021;8033;8057		90.601	14.097	1	20618000			73233	8768	51273	51355	80121;80122;80123;80124;80125	80123					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.286865234375	2	495.286943	988.559333	0.071989	3.5655E-05	-0.37385	-0.00018516	-0.30186	-0.00014951	495.28677554173083	67.25	1.6492	67.274	66.855	68.504	0.023903					121	41	6	0	0	0	0.15388	3	7949	7915;7925;7949		98.582	16.341	1	22084000			73234	8768	51273	51355	80126;80127;80128	80128					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2870178222656	2	495.286943	988.559333	0.28041	0.00013888	-0.074394	-3.6847E-05	0.20601	0.00010204	495.28680280311136	67.466	0.95113	67.211	66.87	67.821	-0.25516					62	22	4	0	0	0	0.6238	1	7784	7784		51.193	7.0759	1	5314400			73235	8768	51273	51355	80129	80129					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2871398925781	2	495.286943	988.559333	-0.1637	-8.1076E-05	0.43647	0.00021618	0.27278	0.0001351	495.2870535756769	67.459	1.0293	67.225	66.889	67.918	-0.23375					71	24	4	0	0	0	0.54416	3	7786	7774;7786;7798		56.434	6.9922	1	5194300			73236	8768	51273	51355	80130;80131;80132	80131					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2870178222656	2	495.286943	988.559333	-0.44535	-0.00022057	0.77243	0.00038258	0.32709	0.000162	495.28721037586297	67.415	1.0301	67.177	66.838	67.868	-0.23814					66	24	4	0	0	0	0.32064	2	7763	7751;7763		72.879	19.943	1	5072900			73237	8768	51273	51355	80133;80134	80134					0.0645952859136969
SLFPGQVVI	9	Unmodified	_SLFPGQVVI_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.28118896484375	2	480.28166	958.548768	1.3792	0.00066239	-1.4991	-0.00071997	-0.11988	-5.7578E-05	480.2807881310432	85.411	2.5325	85.411	84.958	87.491	0					126	59	4	0	0	0	0.057894	6	10730	10686;10697;10707;10718;10730;10744		125.81	14.166	1	6251900			73238	922	51274	51356	80135;80136;80137;80138;80139;80140	80139					0.0678354593695758
SLFPGQVVI	9	Unmodified	_SLFPGQVVI_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.28173828125	2	480.28166	958.548768	-0.15971	-7.6706E-05	0.2124	0.00010201	0.052693	2.5308E-05	480.2815939490878	85.364	2.063	85.307	84.898	86.961	-0.057617					109	48	4	0	0	0	0.033448	6	10671	10651;10661;10671;10683;10696;10711		138.83	17.727	1	5312800			73239	922	51274	51356	80141;80142;80143;80144;80145;80146	80143					0.0678354593695758
SLFPGQVVI	9	Unmodified	_SLFPGQVVI_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.28155517578125	2	480.28166	958.548768	-0.69366	-0.00033315	0.59894	0.00028766	-0.094721	-4.5493E-05	480.281787379621	85.343	2.5264	85.368	84.953	87.48	0.025528					130	59	5	0	0	0	0.013995	6	10618	10598;10608;10618;10630;10642;10656		181.81	14.037	1	6217300			73240	922	51274	51356	80147;80148;80149;80150;80151;80152	80149					0.0678354593695758
SLFPLQAWW	9	Unmodified	_SLFPLQAWW_					0	0	0		ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.74072265625	2	574.300384	1146.58622	-0.56563	-0.00032484	-1.9267	-0.0011065	-2.4923	-0.0014313	574.2989460170469	66.501	0.49146	66.256	65.931	66.422	-0.24517					26	12	3	0	0	0	0.024457	1	7571	7571		37.159	18.056	1	230830			73241	14076	51275	51357	80153	80153					0.018786372025488163
SLFPLQAWW	9	Unmodified	_SLFPLQAWW_					0	0	0		ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	574.300384	1146.58622	-0.7433	-0.00042688	-1.1269	-0.00064717	-1.8702	-0.001074	574.2993997258717	66.458	0.37688	66.235	66.026	66.403	-0.22373	0.00041717	0.0005327	NaN	35.618	30	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299740			73242	14076	51275	51357							0.018786372025488163
SLFPLRRT	8	Unmodified	_SLFPLRRT_					0	0	0		ENST00000504091.1_1_5:148424098-148424239:-|nuORF	ENST00000504091.1_1_5:148424098-148424239:-|nuORF	ENST00000504091.1_1_5:148424098-148424239:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.287109375	2	495.298176	988.581799	0.04245	2.1026E-05	3.5703	0.0017684	3.6128	0.0017894	495.2998206154331	67.291	0.27945	67.315	67.071	67.35	0.023911					10	6	2	0	0	0	0.027866	1	7937	7937		68.787	5.4806	1	140730			73243	15706	51276	51358	80154	80154					0.0870517277963927
SLFPLVTAL	9	Unmodified	_SLFPLVTAL_					0	0	0			REV__ENST00000301194.8_1_19:54947579-54947675:+|nuORF	REV__ENST00000301194.8_1_19:54947579-54947675:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.77325439453125	2	480.791861	959.569169	-0.31684	-0.00015233	-0.029046	-1.3965E-05	-0.34588	-0.0001663	480.7915955995631	93.21	0.59152	93.218	92.929	93.52	0.0077209					23	13	2	0	0	0	0.024405	1	11789	11789		44.117	0	1	112620	+		73244	30056	51277	51359	80155	80155					0.08776716596742062
SLFPNSPKW	9	Unmodified	_SLFPNSPKW_					0	0	0		ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2818603515625	2	538.282192	1074.54983	-0.76713	-0.00041293	0.80288	0.00043218	0.035755	1.9246E-05	538.2825143417363	65.178	1.0999	64.943	64.49	65.59	-0.2345					71	26	4	0	0	0	0.071379	4	7425	7414;7425;7437;7449		120.87	48.991	1	3202900			73245	5145	51278	51360	80156;80157;80158;80159	80157					0.015537603058419336
SLFPNSPKW	9	Unmodified	_SLFPNSPKW_					0	0	0		ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2826538085938	2	538.282192	1074.54983	-1.4776	-0.00079537	1.3869	0.00074656	-0.090666	-4.8804E-05	538.2828414549774	65.149	1.0158	64.946	64.5	65.516	-0.20254					65	24	4	0	0	0	0.094442	4	7439	7416;7428;7439;7452		112.41	38.156	1	3509600			73246	5145	51278	51360	80160;80161;80162;80163	80162					0.015537603058419336
SLFPNSPKW	9	Unmodified	_SLFPNSPKW_					0	0	0		ENSG00000137673|ENST00000260227|MMP7;ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.281982421875	2	538.282192	1074.54983	-1.2755	-0.00068656	1.1781	0.00063413	-0.097395	-5.2426E-05	538.2827475655193	65.156	1.0945	64.9	64.504	65.598	-0.25563					71	26	4	0	0	0	0.12914	5	7426	7404;7414;7426;7440;7446		104.06	38.254	1	3365800			73247	5145	51278	51360	80164;80165;80166;80167;80168	80166					0.015537603058419336
SLFPQKLLN	9	Unmodified	_SLFPQKLLN_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENST00000476890.1_1_3:185813076-185826774:-|nuORF	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7872924804688	2	530.313492	1058.61243	-0.92331	-0.00048964	-3.4921	-0.0018519	-4.4155	-0.0023416	530.3114690261685	91.129	0.70783	91.006	90.834	91.542	-0.12341					24	16	2	0	0	0	0.024477	1	11181	11181		27.882	1.1893	1	113710			73248	18765	51279	51361	80169	80169					0.08546906374067476
SLFPQKLLN	9	Unmodified	_SLFPQKLLN_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENST00000476890.1_1_3:185813076-185826774:-|nuORF	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.313492	1058.61243	-1.7988	-0.00095393	-1.4723	-0.00078077	-3.2711	-0.0017347	530.3119971978474	90.523	0.87822	90.523	90.173	91.051	0	-0.25295	0.0019893	NaN	42.396	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98418			73249	18765	51279	51361							0.08546906374067476
SLFPQKLLN	9	Unmodified	_SLFPQKLLN_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENST00000476890.1_1_3:185813076-185826774:-|nuORF	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.313492	1058.61243	-0.4718	-0.0002502	-2.7864	-0.0014777	-3.2582	-0.0017279	530.3116339295447	90.82	0.75424	90.803	90.276	91.03	-0.016563	0.027348	0.0005955	NaN	42.396	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130980			73250	18765	51279	51361							0.08546906374067476
SLFPQKLLN	9	Unmodified	_SLFPQKLLN_					0	0	0		nc|ENSG00000244405|P41161-2|ETV5;ENST00000476890.1_1_3:185813076-185826774:-|nuORF	nc|ENSG00000244405|P41161-2|ETV5	nc|ENSG00000244405|P41161-2|ETV5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.313492	1058.61243	0.13863	7.352E-05	-2.7504	-0.0014586	-2.6118	-0.0013851	530.3118657033441	90.503	0.58643	90.516	90.366	90.952	0.013443	-0.25997	0.00063368	NaN	42.396	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128740			73251	18765	51279	51361							0.08546906374067476
SLFRKKQKG	9	Unmodified	_SLFRKKQKG_					0	0	0		nc|ENSG00000249948|Q9H227|GBA3	nc|ENSG00000249948|Q9H227|GBA3	nc|ENSG00000249948|Q9H227|GBA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3231811523438	2	546.337833	1090.66111	-0.76479	-0.00041784	1.7748	0.00096964	1.01	0.0005518	546.3386502185994	75.246	0.54974	75.001	74.716	75.266	-0.24455					26	13	2	0	0	0	0.023817	1	9208	9208		51.335	0	1	251170			73252	18768	51280	51362	80170	80170					0.11940819733786157
SLFRKKQKG	9	Unmodified	_SLFRKKQKG_					0	0	0		nc|ENSG00000249948|Q9H227|GBA3	nc|ENSG00000249948|Q9H227|GBA3	nc|ENSG00000249948|Q9H227|GBA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3238525390625	2	546.337833	1090.66111	-0.84352	-0.00046085	1.9582	0.0010699	1.1147	0.000609	546.3387415121908	75.02	0.55264	75.031	74.773	75.326	0.010376					24	13	2	0	0	0	0.023817	1	9131	9131		51.335	0	1	327110			73253	18768	51280	51362	80171	80171					0.11940819733786157
SLFRRVVL	8	Unmodified	_SLFRRVVL_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7873229980469	2	495.316369	988.618185	-0.091107	-4.5127E-05	-0.81458	-0.00040348	-0.90569	-0.0004486	495.31576484992706	55.458	0.71838	55.302	55.059	55.778	-0.15602					27	19	2	0	0	0	0.027866	1	6098	6098		42.474	6.8562	1	313560	+		73254	19472	51281	51363	80172	80172					0.12342049676362876
SLFRRVVL	8	Unmodified	_SLFRRVVL_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.316369	988.618185	1.0948	0.00054228	-1.6084	-0.00079668	-0.51361	-0.0002544	495.31540152912874	55.323	0.88275	55.323	55.116	55.999	0	0.031602	-0.00088152	NaN	33.516	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269510	+		73255	19472	51281	51363							0.12342049676362876
SLFRRVVL	8	Unmodified	_SLFRRVVL_					0	0	0			REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	REV__chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|67	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.316369	988.618185	-0.923	-0.00045718	0.31057	0.00015383	-0.61244	-0.00030335	495.3164161878798	55.151	0.76929	55.249	55.05	55.819	0.098015	-0.042228	0.0010195	NaN	33.516	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274410	+		73256	19472	51281	51363							0.12342049676362876
SLFSNIESV	9	Unmodified	_SLFSNIESV_					0	0	0		ENSG00000236699|ENST00000420470|ARHGEF38;nc|ENSG00000236699|Q9NXL2-1|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2558288574219	2	498.25584	994.497126	-0.043071	-2.146E-05	0.36112	0.00017993	0.31805	0.00015847	498.2558040785162	79.506	0.70933	79.506	79.119	79.828	0					41	16	4	0	0	0	0.03849	1	9869	9869		134.81	10.731	1	1083400			73257	10741	51282	51364	80173	80173					-0.0003424254761057455
SLFSPMNSL	9	Unmodified	_SLFSPMNSL_					0	0	0			REV__ENST00000258412.7_1_2:219140006-219140096:-|nuORF	REV__ENST00000258412.7_1_2:219140006-219140096:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.24981689453125	2	498.24696	994.479368	0.084277	4.1991E-05	4.1643	0.0020748	4.2486	0.0021168	498.2489412150176	28.648	1.2885	28.729	28.124	29.412	0.080811					72	31	3	0	0	0	0.15029	1	1643	1643		99.375	3.1845	1	1596100	+		73258	29577	51283	51365	80174	80174					-0.01809281074122282
SLFSRYLM	8	Unmodified	_SLFSRYLM_					0	0	0			REV__ENST00000319801.9_1_2:20458107-20460135:-|nuORF	REV__ENST00000319801.9_1_2:20458107-20460135:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.80828857421875	2	508.76532	1015.51609	-0.64444	-0.00032787	-2.2602	-0.0011499	-2.9046	-0.0014778	509.2657417239136	28.742	0.77195	28.574	28.213	28.985	-0.16897					28	17	2	0	0	0	0.027866	1	1746	1746		26.796	11.16	1	40837	+		73259	30328	51284	51366	80175	80175					0.008950155424372497
SLFSRYLM	8	Unmodified	_SLFSRYLM_					0	0	0			REV__ENST00000319801.9_1_2:20458107-20460135:-|nuORF	REV__ENST00000319801.9_1_2:20458107-20460135:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.76532	1015.51609	-0.63047	-0.00032076	-1.8906	-0.00096186	-2.521	-0.0012826	509.26773103976126	28.924	0.54534	28.927	28.547	29.092	0.0031357	0.17688	0.00022959	NaN	19.36	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42125	+		73260	30328	51284	51366							0.008950155424372497
SLFSSPRTG	9	Unmodified	_SLFSSPRTG_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24;KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	nc|ENSG00000186638|Q5T7B8-4|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.30743408203125	2	476.248349	950.482145	-0.26227	-0.00012491	-0.059754	-2.8458E-05	-0.32203	-0.00015337	476.24813821890643	43.051	0.38908	42.814	42.6	42.989	-0.23736					14	9	2	0	0	0	0.02435	1	3888	3888		34.173	2.2177	1	107560			73261	9567	51285	51367	80176	80176					0.004923103750456903
SLFTEGHTDI	10	Unmodified	_SLFTEGHTDI_					0	0	0			REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF	REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.27197265625	2	560.269478	1118.5244	-0.13336	-7.4719E-05	3.4887	0.0019546	3.3554	0.0018799	560.2714295468528	93.283	3.4529	93.283	92.622	96.075	0					214	81	5	0	0	0	0.48123	2	11834	11834;11858		90.37	8.1293	1	17229000	+		73262	20422	51286	51368	80177;80178	80177					-0.03011759007222281
SLFTEGHTDI	10	Unmodified	_SLFTEGHTDI_					0	0	0			REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF	REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.2714233398438	2	560.269478	1118.5244	-0.67598	-0.00037873	3.8842	0.0021762	3.2082	0.0017975	560.2716558155962	93.228	2.7313	93.223	92.862	95.593	-0.0042038					190	64	6	0	0	0	0.48123	2	11842	11829;11842		90.37	2.7895	1	17833000	+		73263	20422	51286	51368	80179;80180	80180					-0.03011759007222281
SLFTEGHTDI	10	Unmodified	_SLFTEGHTDI_					0	0	0			REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF	REV__ENST00000554011.5_1_14:57675329-57698504:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.272216796875	2	560.269478	1118.5244	-0.41015	-0.00022979	3.7449	0.0020982	3.3348	0.0018684	560.2715595691317	93.276	3.4097	93.284	92.421	95.831	0.0077209					205	80	6	0	0	0	0.55353	3	11749	11749;11794;11807		82.241	7.1972	1	17679000	+		73264	20422	51286	51368	80181;80182;80183	80181					-0.03011759007222281
SLFTRSILA	9	Unmodified	_SLFTRSILA_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7601318359375	2	504.297842	1006.58113	0.37302	0.00018811	-0.78589	-0.00039632	-0.41287	-0.00020821	504.29734304545485	60.047	0.61868	60.047	59.711	60.33	0					27	16	2	0	0	0	0.024405	1	6875	6875		44.117	16.235	1	1801800	+		73265	26751	51287	51369	80184	80184					0.07810333339944009
SLFTYFFAI	9	Unmodified	_SLFTYFFAI_					0	0	0			REV__OR5M10|p.V276F|1|0.21|ENSG00000254834|chr11:56576896-56576896|C/A|missense_variant	REV__OR5M10|p.V276F|1|0.21|ENSG00000254834|chr11:56576896-56576896|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.3155517578125	2	554.789318	1107.56408	-0.3622	-0.00020095	-1.5851	-0.00087942	-1.9473	-0.0010804	554.7873978033518	67.577	0.47124	67.339	67.118	67.589	-0.23814					16	10	2	0	0	0	0.024325	1	7784	7784		31.955	0	1	153850	+		73266	37323	51288	51370	80185	80185					0.014604127341499407
SLFVLAARL	9	Unmodified	_SLFVLAARL_					0	0	0		ENSG00000153902|ENST00000310123|LGI4;ENST00000392225.7_1_19:35616099-35617731:-|nuORF	ENSG00000153902|ENST00000310123|LGI4	ENSG00000153902|ENST00000310123|LGI4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.287109375	2	495.310752	988.606951	0.087898	4.3537E-05	-0.52278	-0.00025894	-0.43488	-0.0002154	495.310182625483	67.386	0.2775	67.409	67.152	67.43	0.023911					10	6	2	0	0	0	0.023817	1	7937	7937		71.296	11.002	1	80008			73267	6364	51289	51371	80186	80186					0.11219227582216718
SLFWYALL	8	Unmodified	_SLFWYALL_					0	0	0			REV__ENSG00000184992|ENST00000341446|BRI3BP	REV__ENSG00000184992|ENST00000341446|BRI3BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8110656738281	2	506.778754	1011.54295	-0.87384	-0.00044284	-1.0575	-0.00053592	-1.9313	-0.00097876	506.78074159180824	54.564	0.30178	54.564	54.321	54.623	0					16	8	3	0	0	0	0.027866	1	5951	5951		54.765	0	1	273030	+		73268	27719	51290	51372	80187	80187					0.03764447425260187
SLFYLGLLW	9	Unmodified	_SLFYLGLLW_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2774658203125	2	556.312961	1110.61137	-0.422	-0.00023476	-3.0144	-0.0016769	-3.4364	-0.0019117	556.3111350417453	77.538	0.72424	77.376	77.14	77.864	-0.16196					34	16	4	0	0	0	0.024436	1	9223	9223		38.806	5.3132	1	1016700	+		73269	21779	51291	51373	80188	80188					0.06048692005128942
SLFYYVPPY	9	Unmodified	_SLFYYVPPY_					0	0	0			REV__ENSG00000279116|ENST00000624618|OR8D2	REV__ENSG00000279116|ENST00000624618|OR8D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.78466796875	2	574.786776	1147.559	-0.24961	-0.00014347	-3.6553	-0.002101	-3.9049	-0.0022445	574.7846923137164	52.602	1.2122	52.475	51.93	53.143	-0.12705					105	30	5	0	0	0	0.72268	1	5448	5448		44.531	2.1349	1	3201900	+		73270	29228	51292	51374	80189	80189					-0.008878911284909918
SLFYYVPPY	9	Unmodified	_SLFYYVPPY_					0	0	0			REV__ENSG00000279116|ENST00000624618|OR8D2	REV__ENSG00000279116|ENST00000624618|OR8D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7850952148438	2	574.786776	1147.559	-0.23714	-0.00013631	-3.8865	-0.0022339	-4.1236	-0.0023702	574.784734892199	52.774	1.026	52.584	51.993	53.019	-0.18982					91	25	5	0	0	0	0.72268	1	5457	5457		44.531	3.1045	1	2631100	+		73271	29228	51292	51374	80190	80190					-0.008878911284909918
SLGDKARPCL	10	Unmodified	_SLGDKARPCL_					0	0	0		AluJo_dup70939|chr19:16095747-16095917:-|2.609708225140752|0.002178492838753|10.23|514.0|9|3|sense	AluJo_dup70939|chr19:16095747-16095917:-|2.609708225140752|0.002178492838753|10.23|514.0|9|3|sense	AluJo_dup70939|chr19:16095747-16095917:-|2.609708225140752|0.002178492838753|10.23|514.0|9|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.31591796875	2	530.284408	1058.55426	-0.47285	-0.00025075	-2.7651	-0.0014663	-3.2379	-0.001717	530.2829313938605	36.657	0.4842	36.44	36.205	36.689	-0.21661					20	11	3	0	0	0	0.03519	1	2863	2863		32.812	0	1	321300			73272	68	51293	51375	80191	80191					0.027329014571023436
SLGDLSRHSN	10	Unmodified	_SLGDLSRHSN_					0	0	0			REV__BIRC6-SPAST|1|fusion;REV__BIRC6-SPAST|3|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.3240356445312	2	543.270344	1084.52613	-0.91604	-0.00049766	-2.5694	-0.0013959	-3.4855	-0.0018936	543.2686341378991	45.327	0.43459	45.371	45.145	45.58	0.04388					23	12	3	0	0	0	0.03519	1	4369	4369		23.523	0	1	584200	+		73273	19208;19209	51294	51376	80192	80192					-0.0127470519862527
SLGDPGFGLQY	11	Unmodified	_SLGDPGFGLQY_					0	0	0		ENST00000320330.7_1_16:29827739-29827916:+|nuORF	ENST00000320330.7_1_16:29827739-29827916:+|nuORF	ENST00000320330.7_1_16:29827739-29827916:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2821655273438	2	577.279846	1152.54514	0.3994	0.00023057	2.051	0.001184	2.4504	0.0014145	577.2808177638217	51.035	0.76787	50.854	50.572	51.34	-0.18071					50	19	4	0	0	0	0.96599	1	5227	5227		44.377	0	1	2197500			73274	12192	51295	51377	80193	80193					-0.025031686275497123
SLGEAWAQVKK	11	Unmodified	_SLGEAWAQVKK_					0	0	0		nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7	nc|ENSG00000007237|O60861-2|GAS7	nc|ENSG00000007237|O60861-2|GAS7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.8370971679688	2	608.837862	1215.66117	0.31552	0.0001921	-1.9629	-0.0011951	-1.6474	-0.001003	608.8365388372442	109.86	0.70741	109.71	109.47	110.18	-0.14888					85	33	5	0	0	0	1.0483	1	13488	13488		25.574	1.0549	1	6043200			73275	811	51296	51378	80194	80194					0.06196774943123273
SLGEGKKEAI	10	Unmodified	_SLGEGKKEAI_					0	0	0		ENST00000462753.5_1_7:129844994-129845132:-|nuORF	ENST00000462753.5_1_7:129844994-129845132:-|nuORF	ENST00000462753.5_1_7:129844994-129845132:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2681274414062	2	516.290214	1030.56587	-0.64535	-0.00033319	0.095447	4.9279E-05	-0.5499	-0.00028391	516.2899881051537	28.125	0.69949	27.956	27.768	28.467	-0.16897					28	16	3	0	0	0	0.03519	1	1587	1587		51.193	10.415	1	706110			73276	14719	51297	51379	80195	80195					0.051814217520814054
SLGEKLRAI	9	Unmodified	_SLGEKLRAI_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2544250488281	2	493.803291	985.59203	0.32477	0.00016037	-2.6956	-0.0013311	-2.3708	-0.0011707	493.8025979604743	57.075	0.42802	56.873	56.672	57.1	-0.20209					16	11	2	0	0	0	0.024405	1	6237	6237		35.618	6.4687	1	217820	+		73277	26836	51298	51380	80196	80196					0.09865735714231505
SLGEKTLDI	9	Unmodified	_SLGEKTLDI_					0	0	0			REV__ENSG00000166669|ENST00000562102|ATF7IP2	REV__ENSG00000166669|ENST00000562102|ATF7IP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2709045410156	2	488.27149	974.528426	0.056726	2.7697E-05	-0.55812	-0.00027251	-0.50139	-0.00024482	488.27117924021184	22.959	0.65362	22.757	22.499	23.153	-0.20193					24	13	2	0	0	0	0.31037	1	866	866		74.255	0	1	549680	+		73278	26040	51299	51381	80197	80197					0.0401433048649551
SLGELHEFI	9	Unmodified	_SLGELHEFI_					0	0	0			REV__ENSG00000163867|ENST00000357182|ZMYM6	REV__ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7583618164062	2	522.771657	1043.52876	-0.12213	-6.3847E-05	-0.73019	-0.00038172	-0.85233	-0.00044557	522.7711655888215	41.291	0.46831	41.064	40.807	41.275	-0.2278					30	11	4	0	0	0	0.024205	1	3629	3629		53.351	16.192	1	303150	+		73279	25647	51300	51382	80198	80198					0.008737502063468128
SLGELQSDQ	9	Unmodified	_SLGELQSDQ_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7332763671875	2	488.732729	975.450904	0.027255	1.332E-05	1.3171	0.0006437	1.3443	0.00065702	488.733184987883	22.815	0.91849	22.626	22.374	23.292	-0.18894					36	19	3	0	0	0	0.45795	1	859	859		62.107	1.9892	1	452160	+		73280	36984	51301	51383	80199	80199					-0.03780307449699194
SLGGGFRR	8	Unmodified	_SLGGGFRR_					0	0	0		ENST00000242108.8_1_7:36192980-36193091:+|nuORF	ENST00000242108.8_1_7:36192980-36193091:+|nuORF	ENST00000242108.8_1_7:36192980-36193091:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.23834228515625	2	425.238119	848.461684	-0.46337	-0.00019704	0.62351	0.00026514	0.16014	6.8098E-05	425.2382500308975	29.6	0.8891	29.428	29.113	30.002	-0.17258					50	20	4	0	0	0	1.0516	1	1829	1829		29.15	1.0681	1	1274700			73281	11286	51302	51384	80200	80200					0.031391845059033585
SLGGIEGRAR	10	Unmodified	_SLGGIEGRAR_					0	0	0			REV__nc|ENSG00000244486|Q96GP6|SCARF2	REV__nc|ENSG00000244486|Q96GP6|SCARF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3038635253906	2	508.285797	1014.55704	-0.5323	-0.00027056	0.63985	0.00032523	0.10756	5.4669E-05	508.7869804165204	26.738	0.16582	26.715	26.569	26.735	-0.023088					5	3	2	0	0	0	0.03519	1	1361	1361		34.173	3.6689	1	23330	+		73282	29000	51303	51385	80201	80201					0.050344929062816846
SLGGTASIGHM	11	Unmodified	_SLGGTASIGHM_					0	0	0		nc|ENSG00000134760|Q02413-2|DSG1;ENSG00000134760|ENST00000257192|DSG1	nc|ENSG00000134760|Q02413-2|DSG1	nc|ENSG00000134760|Q02413-2|DSG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7091674804688	2	515.752941	1029.49133	-0.09552	-4.9265E-05	3.2778	0.0016905	3.1823	0.0016413	515.7541562117748	30.038	0.55576	29.889	29.584	30.14	-0.14952					19	12	2	0	0	0	0.024811	1	1851	1851		37.812	16.865	1	97369			73283	4825	51304	51386	80202	80202					-0.02223664330927022
SLGHLVYVLV	10	Unmodified	_SLGHLVYVLV_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3269653320312	2	550.329142	1098.64373	-0.65208	-0.00035886	-3.6624	-0.0020155	-4.3145	-0.0023744	550.3270581023166	52.08	1.2686	51.933	51.642	52.91	-0.14735					90	33	5	0	0	0	0.75995	1	5528	5528		63.306	5.495	1	11448000			73284	7503	51305	51387	80203	80203					0.09835479408116043
SLGHLVYVLV	10	Unmodified	_SLGHLVYVLV_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3261108398438	2	550.329142	1098.64373	-1.2688	-0.00069827	-3.1675	-0.0017432	-4.4363	-0.0024414	550.3274046393027	51.874	1.4352	51.966	51.615	53.05	0.091942					82	37	3	0	0	0	1.0142	1	5441	5441		44.117	2.6902	1	9187200			73285	7503	51305	51387	80204	80204					0.09835479408116043
SLGIDGGPSDI	11	Unmodified	_SLGIDGGPSDI_					0	0	0			REV__ENSG00000125347|ENST00000245414|IRF1	REV__ENSG00000125347|ENST00000245414|IRF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8025512695312	2	515.756204	1029.49785	-0.10946	-5.6456E-05	0.65086	0.00033568	0.5414	0.00027923	515.7563746172788	58.751	1.3174	58.842	58.486	59.803	0.091217					64	35	2	0	0	0	0.024785	1	6704	6704		17.468	0	1	496860	+		73286	22808	51306	51388	80205	80205					-0.01571447898572842
SLGIITPVAM	10	Unmodified	_SLGIITPVAM_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2906188964844	2	501.288628	1000.5627	0.40529	0.00020317	3.3061	0.0016573	3.7114	0.0018605	501.2901072345097	88.222	1.3061	88.222	87.922	89.228	0					72	30	5	0	0	0	0.96965	1	11124	11124		49.442	1.7842	1	995670	+		73287	25056	51307	51389	80206	80206					0.062444553737236674
SLGIPVNHLI	10	Unmodified	_SLGIPVNHLI_					0	0	0		ENSG00000161055|ENST00000292641|SCGB3A1;ENST00000512120.1_1_5:180017233-180018052:-|nuORF	ENSG00000161055|ENST00000292641|SCGB3A1	ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8165893554688	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	1.0271	1	10967	10967		42.396	1.618	1	3741200			73288	6862	51308	51390	80207	80207					0.09498308748334239
SLGIPVNHLI	10	Unmodified	_SLGIPVNHLI_					0	0	0		ENSG00000161055|ENST00000292641|SCGB3A1;ENST00000512120.1_1_5:180017233-180018052:-|nuORF	ENSG00000161055|ENST00000292641|SCGB3A1	ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167114257812	2	531.818941	1061.62333	0.17298	9.1995E-05	-4.1238	-0.0021931	-3.9509	-0.0021011	531.8166531068138	85.355	2.6332	85.16	83.7	86.333	-0.19508					190	61	4	0	0	0	0.941	1	10335	10335		51.335	1.8939	1	1282000			73289	6862	51308	51390	80208	80208					0.09498308748334239
SLGIPVNHLI	10	Unmodified	_SLGIPVNHLI_					0	0	0		ENSG00000161055|ENST00000292641|SCGB3A1;ENST00000512120.1_1_5:180017233-180018052:-|nuORF	ENSG00000161055|ENST00000292641|SCGB3A1	ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8168334960938	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.1088	1	10714	10714		31.53	0	1	4853400			73290	6862	51308	51390	80209	80209					0.09498308748334239
SLGIPVNHLI	10	Unmodified	_SLGIPVNHLI_					0	0	0		ENSG00000161055|ENST00000292641|SCGB3A1;ENST00000512120.1_1_5:180017233-180018052:-|nuORF	ENSG00000161055|ENST00000292641|SCGB3A1	ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165893554688	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	1.0508	1	10324	10324		39.253	2.0937	1	1297700			73291	6862	51308	51390	80210	80210					0.09498308748334239
SLGIPVNHLI	10	Unmodified	_SLGIPVNHLI_					0	0	0		ENSG00000161055|ENST00000292641|SCGB3A1;ENST00000512120.1_1_5:180017233-180018052:-|nuORF	ENSG00000161055|ENST00000292641|SCGB3A1	ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8170776367188	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.0271	2	10820	10747;10820		42.396	3.1433	1	4521600			73292	6862	51308	51390	80211;80212	80212					0.09498308748334239
SLGITVLLSL	10	Unmodified	_SLGITVLLSL_					0	0	0		ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7;ENSG00000166664|ENST00000299847|CHRFAM7A	ENSG00000175344|ENST00000306901|CHRNA7;ENSG00000166664|ENST00000299847|CHRFAM7A	ENSG00000175344|ENST00000306901|CHRNA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.27667236328125	2	508.323525	1014.6325	0.091324	4.6422E-05	0.30046	0.00015273	0.39178	0.00019915	508.32322753877435	78.635	0.77102	78.404	78.049	78.82	-0.23141					47	17	4	0	0	0	0.03519	1	9366	9366		54.776	0	1	338240			73293	8553;7592	51309	51391	80213	80213					0.12576657314014028
SLGKRQVLK	9	Unmodified	_SLGKRQVLK_					0	0	0			REV__ENSG00000171102|ENST00000372034|OBP2B	REV__ENSG00000171102|ENST00000372034|OBP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8028564453125	2	514.832383	1027.65021	-0.36336	-0.00018707	2.7959	0.0014394	2.4326	0.0012524	514.833737340273	59.506	0.22663	59.592	59.501	59.728	0.085682					9	5	2	0	0	0	0.024447	1	6741	6741		32.812	13.452	1	80124	+		73294	26541	51310	51392	80214	80214					0.13749417359508698
SLGLALALCL	10	Unmodified	_SLGLALALCL_					0	0	0		ENST00000505309.1_1_5:42808281-42808491:-|nuORF;ENST00000510965.1_1_5:42808281-42811941:-|nuORF;ENST00000514218.5_3_5:42808281-42887487:-|nuORF;ENSG00000250722|ENST00000514985|SELENOP	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.29736328125	2	487.291171	972.567789	-0.23907	-0.0001165	4.0187	0.0019583	3.7797	0.0018418	487.2923680762428	67.482	0.66637	67.506	67.23	67.897	0.023911					21	16	2	0	0	0	0.03519	1	7959	7959		20.947	5.3051	1	181790			73295	10851	51311	51393	80215	80215					0.0804075923633718
SLGLCLGLLL	10	Unmodified	_SLGLCLGLLL_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2904052734375	2	501.306821	1000.59909	0.43386	0.0002175	3.735	0.0018724	4.1688	0.0020899	501.308277539125	85.262	0.66328	85.067	84.888	85.552	-0.19508					19	15	2	0	0	0	0.03519	1	10316	10316		37.159	15.199	1	101210	+		73296	36627	51312	51394	80216	80216					0.09881332270458643
SLGLEIEAI	9	Unmodified	_SLGLEIEAI_					0	0	0		ENST00000593362.1_1_19:49912247-49918391:+|nuORF;ENSG00000161609|ENST00000447857|KASH5	ENST00000593362.1_1_19:49912247-49918391:+|nuORF	ENST00000593362.1_1_19:49912247-49918391:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7694091796875	2	472.768583	943.522613	0.094777	4.4808E-05	1.0036	0.00047447	1.0984	0.00051927	472.76868443977963	75.943	1.0603	75.943	75.659	76.719	0					41	26	3	0	0	0	0.40179	1	9349	9349		65.803	12.452	1	1051600			73297	17389	51313	51395	80217	80217					0.04859231974819522
SLGLGRLAR	9	Unmodified	_SLGLGRLAR_					0	0	0			REV__ENSG00000047230|ENST00000359276|CTPS2	REV__ENSG00000047230|ENST00000359276|CTPS2	MSMS	OPSCC_40_ClassI_Rep-2	5	471.79473876953125	2	471.795801	941.577048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.403	1	19.203	18.703	19.703	-0.2001								0	0	0	0.63578	1	412	412		34.173	6.2903	1		+		73298	20120	51314	51396	80218	80218					0.10392288636899139
SLGLGSGLSPV	11	Unmodified	_SLGLGSGLSPV_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2544250488281	2	493.779482	985.544411	0.17781	8.7797E-05	0.097815	4.8299E-05	0.27562	0.0001361	493.77940620560787	57.615	0.77658	57.425	56.973	57.75	-0.19018					32	20	2	0	0	0	0.024752	1	6237	6237		32.812	0	1	3203200	+		73299	22714	51315	51397	80219	80219					0.05106036723395846
SLGLKRLMCI	10	Unmodified	_SLGLKRLMCI_					0	0	0		ENST00000249016.4_1_22:41075352-41075709:+|nuORF	ENST00000249016.4_1_22:41075352-41075709:+|nuORF	ENST00000249016.4_1_22:41075352-41075709:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.328857421875	2	567.330304	1132.64606	-1.643	-0.00093215	0.42701	0.00024226	-1.216	-0.00068989	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.1088	1	11674	11674		31.53	0.96095	1	14057000			73300	11338	51316	51398	80220	80220					0.08503868549951221
SLGLKRLMCI	10	Unmodified	_SLGLKRLMCI_					0	0	0		ENST00000249016.4_1_22:41075352-41075709:+|nuORF	ENST00000249016.4_1_22:41075352-41075709:+|nuORF	ENST00000249016.4_1_22:41075352-41075709:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3296508789062	2	567.330304	1132.64606	-0.48805	-0.00027688	-0.73534	-0.00041718	-1.2234	-0.00069406	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	1.1088	1	11654	11654		31.53	0	1	14972000			73301	11338	51316	51398	80221	80221					0.08503868549951221
SLGLLEQYT	9	Unmodified	_SLGLLEQYT_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.27099609375	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	0.87448	1	13641	13641		34.173	0	1	6386000	+		73302	22685	51317	51399	80222	80222					0.01806330486465413
SLGLLEQYT	9	Unmodified	_SLGLLEQYT_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2710571289062	2	512.27149	1022.52843	0.13357	6.8426E-05	-0.47048	-0.00024101	-0.33691	-0.00017259	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	0.85329	1	13020	13020		35.618	1.4457	1	236480	+		73303	22685	51317	51399	80223	80223					0.01806330486465413
SLGLLPQQPQ	10	Unmodified	_SLGLLPQQPQ_					0	0	0			REV__ENST00000462849.1_1_1:1177930-1178707:-|nuORF	REV__ENST00000462849.1_1_1:1177930-1178707:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3262939453125	2	540.806031	1079.59751	-1.0169	-0.00054993	0.78278	0.00042333	-0.23409	-0.0001266	540.8067487893488	49.015	0.53181	48.914	48.655	49.186	-0.1008					20	13	2	0	0	0	0.03519	1	4862	4862		47.657	0	1	243110	+		73304	32916	51318	51400	80224	80224					0.060894145060501614
SLGLNTEPLP	10	Unmodified	_SLGLNTEPLP_					0	0	0			REV__ENSG00000102878|ENST00000521374|HSF4	REV__ENSG00000102878|ENST00000521374|HSF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.7842407226562	2	520.784764	1039.55498	-0.17121	-8.9164E-05	-0.92176	-0.00048004	-1.093	-0.0005692	520.7841569442194	106.53	2.057	106.53	105.41	107.47	0.0018311					159	68	4	0	0	0	1.0508	2	13615	13615;13622		39.253	0	1	7199700	+		73305	21334	51319	51401	80225;80226	80225					0.036780193777985914
SLGLNTEPLP	10	Unmodified	_SLGLNTEPLP_					0	0	0			REV__ENSG00000102878|ENST00000521374|HSF4	REV__ENSG00000102878|ENST00000521374|HSF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7838134765625	2	520.784764	1039.55498	0.7045	0.00036689	-1.8684	-0.00097301	-1.1639	-0.00060612	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	1.1329	1	13285	13285		27.882	1.1893	1	3641400	+		73306	21334	51319	51401	80227	80227					0.036780193777985914
SLGLPGHGAP	10	Unmodified	_SLGLPGHGAP_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.7662048339844	2	453.245609	904.476666	0.46982	0.00021294	-0.64535	-0.0002925	-0.17553	-7.9558E-05	453.24518990938293	46.509	0.94578	46.509	46.021	46.967	0					42	25	2	0	0	0	0.03519	1	4607	4607		20.947	2.6848	1	469290			73307	6054	51320	51402	80228	80228					0.02060631583231043
SLGLPGHGAP	10	Unmodified	_SLGLPGHGAP_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	453.245609	904.476666	-0.59385	-0.00026916	0.55109	0.00024978	-0.04276	-1.9381E-05	453.24574669899727	46.556	1.0279	46.403	46.024	47.052	-0.15301	-0.054014	0.00058895	NaN	20.947	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441430			73308	6054	51320	51402							0.02060631583231043
SLGLPGHGAP	10	Unmodified	_SLGLPGHGAP_					0	0	0		nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.245609	904.476666	0.047483	2.1521E-05	-0.32404	-0.00014687	-0.27656	-0.00012535	453.2453791674872	46.407	0.89116	46.459	46.096	46.987	0.051395	0.0020363	-0.00020435	NaN	20.947	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453210			73309	6054	51320	51402							0.02060631583231043
SLGLPIAAS	9	Unmodified	_SLGLPIAAS_					0	0	0		ENSG00000063169|ENST00000594866|BICRA;ENST00000602258.1_1_19:48204415-48205669:+|nuORF;nc|ENSG00000063169|Q9NZM4-2|BICRA	ENSG00000063169|ENST00000594866|BICRA	ENSG00000063169|ENST00000594866|BICRA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.7618103027344	2	414.744911	827.475269	0.23422	9.7143E-05	-2.2124	-0.00091758	-1.9782	-0.00082044	414.7436855859197	87.837	0.20438	87.701	87.516	87.721	-0.13613					7	4	2	0	0	0	0.024381	1	10689	10689		21.96	0	1	105730			73310	1258	51321	51403	80229	80229					0.054629974944646165
SLGLRSRQL	9	Unmodified	_SLGLRSRQL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8025512695312	2	515.311815	1028.60908	-0.16467	-8.4859E-05	-3.689	-0.001901	-3.8537	-0.0019859	515.3097156931934	59.104	0.68816	59.19	58.813	59.501	0.085686					59	18	5	0	0	0	0.024292	1	6704	6704		40.778	12.896	1	2680900	+		73311	20232	51322	51404	80230	80230					0.09591656320048969
SLGLRSRQL	9	Unmodified	_SLGLRSRQL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.311815	1028.60908	0.34427	0.00017741	-4.1337	-0.0021301	-3.7894	-0.0019527	515.3095488789702	59.526	0.60392	59.277	58.93	59.533	-0.24842	0.016996	3.5328E-05	NaN	49.442	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	844510	+		73312	20232	51322	51404							0.09591656320048969
SLGLSRLPVL	10	Unmodified	_SLGLSRLPVL_					0	0	0			REV__ENST00000428360.2_1_2:71297680-71299860:+|nuORF	REV__ENST00000428360.2_1_2:71297680-71299860:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2388916015625	2	527.834591	1053.65463	0.025717	1.3574E-05	-0.73953	-0.00039035	-0.71381	-0.00037677	527.834280569065	67.17	0.65522	67.194	66.898	67.554	0.023911					38	15	3	0	0	0	0.03519	1	7952	7952		49.536	3.5841	1	906950	+		73313	22759	51323	51405	80231	80231					0.12994881782401535
SLGLVPHQVL	10	Unmodified	_SLGLVPHQVL_					0	0	0		nc|ENSG00000197548|O95352-2|ATG7	nc|ENSG00000197548|O95352-2|ATG7	nc|ENSG00000197548|O95352-2|ATG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.817138671875	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.0508	1	10786	10786		39.253	1.4413	1	4853400			73314	18637	51324	51406	80232	80232					0.09498308748334239
SLGLYAAVVQL	11	Unmodified	_SLGLYAAVVQL_					0	0	0		ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3297119140625	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.9728	1	11140	11140		42.864	2.0861	1	4134200			73315	7078	51325	51407	80233	80233					0.0881915819995811
SLGPPAKPALP	11	Unmodified	_SLGPPAKPALP_					0	0	0		nc|ENSG00000290915|Q107X0|KLKP1	nc|ENSG00000290915|Q107X0|KLKP1	nc|ENSG00000290915|Q107X0|KLKP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.3088989257812	2	524.313492	1046.61243	-1.1636	-0.00061009	0.83226	0.00043636	-0.33133	-0.00017372	524.3139743647313	73.243	1.977	73.243	72.74	74.717	0					163	48	5	0	0	0	0.9728	1	9001	9001		42.864	4.0581	1	37349000			73316	18833	51326	51408	80234	80234					0.09098906374038052
SLGRRRGRPR	10	Unmodified	_SLGRRRGRPR_					0	0	0		ENST00000434618.6_1_6:33267742-33268024:-|nuORF	ENST00000434618.6_1_6:33267742-33268024:-|nuORF	ENST00000434618.6_1_6:33267742-33268024:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.8719482421875	2	605.871228	1209.7279	0.020307	1.2303E-05	1.4201	0.0008604	1.4404	0.0008727	605.8718618378006	98.699	1.1903	98.563	98.233	99.423	-0.13626					83	28	5	0	0	0	1.089	1	12212	12212		34.173	1.3601	1	1147100			73317	14248	51327	51409	80235	80235					0.13142868068257485
SLGRYRLL	8	Unmodified	_SLGRYRLL_					0	0	0		ENSG00000240694|ENST00000522362|PNMA2	ENSG00000240694|ENST00000522362|PNMA2	ENSG00000240694|ENST00000522362|PNMA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7496337890625	2	489.298176	976.581799	-0.2854	-0.00013964	1.9291	0.00094392	1.6437	0.00080427	489.2990079064888	28.783	0.63387	28.864	28.533	29.167	0.080811					34	15	4	0	0	0	0.027866	1	1630	1630		17.365	5.8539	1	449490			73318	10771	51328	51410	80236	80236					0.09257172779666689
SLGSGGQKN	9	Unmodified	_SLGSGGQKN_					0	0	0		ENST00000560590.5_1_15:77864683-77865123:+|nuORF;ENST00000561123.2_1_15:77864683-77901013:+|nuORF	ENST00000560590.5_1_15:77864683-77865123:+|nuORF	ENST00000560590.5_1_15:77864683-77865123:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.2184753417969	2	424.217049	846.419545	0.15091	6.4021E-05	3.3998	0.0014423	3.5507	0.0015063	424.2184034867315	98.49	2.0564	98.5	97.728	99.785	0.010239					126	47	5	0	0	0	0.72875	1	12526	12526		44.117	5.3107	1	7266600			73319	16806	51329	51411	80237	80237					-0.009808356931443996
SLGSLLDGLL	10	Unmodified	_SLGSLLDGLL_					0	0	0			REV__ENST00000489483.5_1_3:48670389-48671049:-|nuORF	REV__ENST00000489483.5_1_3:48670389-48671049:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.2903747558594	2	494.289682	986.564812	-0.39887	-0.00019716	0.85592	0.00042307	0.45705	0.00022592	494.2899703136262	61.665	1.1195	61.452	61.125	62.244	-0.21375					59	27	4	0	0	0	0.62431	1	6906	6906		74.255	6.7614	1	1303900	+		73320	28867	51330	51412	80238	80238					0.07099207383191697
SLGSQIPKLP	10	Unmodified	_SLGSQIPKLP_					0	0	0		ENST00000233813.4_1_2:217539384-217539456:-|nuORF	ENST00000233813.4_1_2:217539384-217539456:-|nuORF	ENST00000233813.4_1_2:217539384-217539456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3053588867188	2	520.310949	1038.60735	-0.32526	-0.00016923	-0.17709	-9.214E-05	-0.50234	-0.00026137	520.8121684134012	47.723	0.52602	47.57	47.301	47.827	-0.153					23	15	2	0	0	0	0.03519	1	4747	4747		69.628	5.4204	1	146070			73321	11245	51331	51413	80239	80239					0.08958602511415847
SLGSYDEL	8	Unmodified	_SLGSYDEL_					0	0	0			REV__nc|ENSG00000126561|P42229-2|STAT5A;REV__ENSG00000173757|ENST00000293328|STAT5B	REV__nc|ENSG00000126561|P42229-2|STAT5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.23541259765625	2	442.205815	882.397078	-0.13019	-5.7572E-05	2.3102	0.0010216	2.18	0.00096401	442.206694151179	33.854	0.16054	33.91	33.81	33.971	0.056572					5	3	2	0	0	0	0.027866	1	2416	2416		71.378	0	1	150280	+		73322	22902;26804	51332	51414	80240	80240					-0.04882479881428026
SLGTTVIL	8	Unmodified	_SLGTTVIL_					0	0	0			REV__ENST00000331483.8_1_17:79801161-79801359:-|nuORF	REV__ENST00000331483.8_1_17:79801161-79801359:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5360412597656	2	402.247286	802.48002	-0.78816	-0.00031704	-3.3099	-0.0013314	-4.098	-0.0016484	402.2465666929872	35.164	0.26513	34.978	34.835	35.1	-0.18675					11	6	2	0	0	0	0.027866	1	2635	2635		20.482	6.7065	1	37618	+		73323	30477	51333	51415	80241	80241					0.0708788163723284
SLGVIMYILLC	11	Unmodified	_SLGVIMYILLC_					0	0	0		ENSG00000162889|ENST00000367103|MAPKAPK2;nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000114738|ENST00000621469|MAPKAPK3	ENSG00000162889|ENST00000367103|MAPKAPK2	ENSG00000162889|ENST00000367103|MAPKAPK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.509765625	3	408.895873	1223.66579	0.13801	5.6433E-05	3.9205	0.0016031	4.0585	0.0016595	408.89749632430295	28.371	0.65901	28.371	28.037	28.696	0					17	15	2	0	0	0	0.024802	1	1645	1645		66.962	40.899	1	53591			73324	7007	51334	51416	80242	80242					0.06290199770046456
SLGVLANSPL	10	Unmodified	_SLGVLANSPL_					0	0	0		ENST00000433228.1_1_X:17546680-17546830:+|nuORF	ENST00000433228.1_1_X:17546680-17546830:+|nuORF	ENST00000433228.1_1_X:17546680-17546830:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.78204345703125	2	485.782025	969.549496	-0.13842	-6.7243E-05	0.30583	0.00014857	0.16741	8.1325E-05	485.78198379801347	24.322	0.68281	24.147	23.743	24.425	-0.17484					38	15	4	0	0	0	0.62431	1	1050	1050		74.255	2.3776	1	898350			73325	14220	51335	51417	80243	80243					0.06350340586004677
SLGVMEYYL	9	Unmodified	_SLGVMEYYL_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;NSUN4|p.N270Tfs*72|1|0.37|ENSG00000117481|chr1:46360758-46360758|A/-|frameshift_variant	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7822265625	2	537.762443	1073.51033	-1.1313	-0.00060836	2.0995	0.001129	0.96817	0.00052064	537.7639225245175	32.96	0.30228	32.96	32.715	33.018	0					10	7	2	0	0	0	0.024487	1	2327	2327		40.573	6.4001	1	144360			73326	3633	51336	51418	80244	80244					-0.02348127759887575
SLGVWQLSV	9	Unmodified	_SLGVWQLSV_					0	0	0			REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|5|1|sense	REV__MER41-int_dup1|chr1:21391000-21391824:+|1.2058173416346922|0.0113655117545758|6.73|451.0|5|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7742919921875	2	494.776742	987.538931	0.52406	0.00025929	-4.3525	-0.0021535	-3.8284	-0.0018942	494.77452513173665	49.638	0.48122	49.638	49.287	49.768	0					44	12	5	0	0	0	0.42604	1	5123	5123		64.207	1.2288	1	6330000	+		73327	36368	51337	51419	80245	80245					0.04466357931573839
SLGWAPQAM	9	Unmodified	_SLGWAPQAM_					0	0	0			REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7306823730469	2	480.73402	959.453487	-0.13761	-6.6153E-05	-3.8859	-0.0018681	-4.0235	-0.0019342	480.7321315524798	31.624	6.3562	31.624	29.773	36.129	0					309	163	4	0	0	0	0.72875	1	2167	2167		44.117	1.6423	1	7088900	+		73328	36510	51338	51420	80246	80246					-0.02786130525748831
SLGWAPQAM	9	Unmodified	_SLGWAPQAM_					0	0	0			REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7314147949219	2	480.73402	959.453487	-0.17875	-8.5931E-05	-4.0102	-0.0019278	-4.1889	-0.0020138	480.7320929835196	31.552	4.2201	31.564	28.598	32.818	0.011797					200	104	3	0	0	0	0.72875	1	2102	2102		44.117	1.7207	1	6976400	+		73329	36510	51338	51420	80247	80247					-0.02786130525748831
SLHAKKRKS	9	Unmodified	_SLHAKKRKS_					0	0	0		ENST00000482486.1_1_20:43566688-43567841:+|nuORF	ENST00000482486.1_1_20:43566688-43567841:+|nuORF	ENST00000482486.1_1_20:43566688-43567841:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.2716674804688	2	527.827632	1053.64071	-0.16542	-8.7312E-05	-1.7084	-0.00090176	-1.8739	-0.00098908	528.3272873081152	46.991	1.2229	46.721	46.379	47.601	-0.26939					51	33	2	0	0	0	0.024541	1	4620	4620		16.473	0	1	458200			73330	15258	51339	51421	80248	80248					0.11603649074004352
SLHCPTSSL	9	Unmodified	_SLHCPTSSL_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	REV__nc|ENSG00000149930|Q9UL54-3|TAOK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7518615722656	2	472.728935	943.443317	-0.04015	-1.898E-05	0.067059	3.1701E-05	0.026908	1.272E-05	472.72875549232447	33.35	2.4885	33.356	32.445	34.933	0.0066223					134	65	3	0	0	0	0.02435	1	2459	2459		42.396	15.6	1	419690	+		73331	36776	51340	51422	80249	80249					-0.03066738250970502
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(82)IV	0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.7678527832031	2	507.76806	1013.52157	0.61006	0.00030977	-1.1292	-0.00057338	-0.51915	-0.00026361	507.7674470469566	59.088	0.99476	59.088	58.75	59.745	0					93	26	5	0	0	0	0.25032	3	6739	6721;6739;6751		82.305	21.333	1	24336000			73332	4914	51341	51423	80250;80251;80252	80251		200			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(66)IV	0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.76812744140625	2	507.76806	1013.52157	1.4038	0.00071281	-1.8853	-0.00095728	-0.48147	-0.00024447	507.76708504622036	59.318	1.0499	59.118	58.78	59.83	-0.20013					101	28	5	0	0	0	0.40179	1	6724	6724		65.803	9.0821	1	25911000			73333	4914	51341	51423	80253	80253		200			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(74)IV	0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.76788330078125	2	507.76806	1013.52157	0.28736	0.00014591	-0.98826	-0.00050181	-0.7009	-0.0003559	507.76761062247033	58.981	1.2766	59.067	58.63	59.906	0.085682					136	34	8	0	0	0	0.31247	2	6638	6638;6663		73.975	15.391	1	22914000			73334	4914	51341	51423	80254;80255	80254		200			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_		SLHDAIM(1)IV		SLHDAIM(74)IV	0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7679138183594	2	507.76806	1013.52157	-1.1368	-0.00057723	0.92237	0.00046835	-0.21442	-0.00010888	507.76832191894147	60.587	2.2409	60.666	59.863	62.104	0.078888					177	59	4	0	0	0	0.31247	1	6875	6875		73.975	10.996	1	6349000			73335	4914	51341	51423	80256	80256		200			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_					0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.76806	1013.52157	0.42155	0.00021405	0.85327	0.00043327	1.2748	0.00064732	507.76773823897446	59.363	0.98627	59.175	58.898	59.884	-0.18795	0.050499	0.0021774	NaN	82.305	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573060			73336	4914	51341	51423				200			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_					0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.76806	1013.52157	0.34169	0.0001735	0.35421	0.00017986	0.69591	0.00035336	507.76773801561706	59.309	0.63906	59.127	58.872	59.511	-0.18134	0.0023629	0.0016706	NaN	82.305	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	652420			73337	4914	51341	51423				200			0.015346943342706254
SLHDAIMIV	9	Oxidation (M)	_SLHDAIM(Oxidation (M))IV_					0	0	1		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.76806	1013.52157	0.23575	0.00011971	0.26187	0.00013297	0.49762	0.00025268	507.7675727529651	59.423	0.6451	59.175	58.888	59.533	-0.24842	0.04977	0.0015768	NaN	82.305	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617950			73338	4914	51341	51423				200			0.015346943342706254
SLHDAIMIV	9	Unmodified	_SLHDAIMIV_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7696533203125	2	499.770603	997.526652	-0.14176	-7.0848E-05	0.52167	0.00026071	0.37991	0.00018987	499.77074925881664	65.32	1.2406	65.32	64.983	66.224	0					92	33	4	0	0	0	0.33245	1	7725	7725		71.296	2.811	1	14555000			73339	4914	51341	51424	80257	80257					0.027789981968794564
SLHDAIMIV	9	Unmodified	_SLHDAIMIV_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7703857421875	2	499.770603	997.526652	-0.40998	-0.00020489	0.87208	0.00043584	0.4621	0.00023094	499.77090805100687	65.6	1.2041	65.327	65.017	66.221	-0.27283					93	32	4	0	0	0	0.55828	1	7735	7735		55.504	2.1528	1	10582000			73340	4914	51341	51424	80258	80258					0.027789981968794564
SLHDHLSNL	9	Unmodified	_SLHDHLSNL_					0	0	0		ENSG00000126467|ENST00000246801|TSKS;nc|ENSG00000126467|Q9UJT2-2|TSKS	ENSG00000126467|ENST00000246801|TSKS	ENSG00000126467|ENST00000246801|TSKS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7930297851562	2	518.26453	1034.51451	-1.2205	-0.00063254	3.5235	0.0018261	2.303	0.0011936	518.264954688665	51.792	0.29949	51.523	51.321	51.62	-0.26903					11	7	2	0	0	0	0.02435	1	5313	5313		34.173	15.069	1	338460			73341	4202	51342	51425	80259	80259					-0.0013690222197055846
SLHEAILEL	9	Unmodified	_SLHEAILEL_					0	0	0			REV__ENSG00000171823|ENST00000339235|FBXL14	REV__ENSG00000171823|ENST00000339235|FBXL14	MSMS	OPSCC_39_ClassI_Rep-1	1	512.7860717773438	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.345	1	71.345	70.845	71.845	0								0	0	0	0.45465	1	8645	8645		57.811	1.0902	1		+		73342	26607	51343	51426	80260	80260					0.04922323240418791
SLHERPKF	8	Unmodified	_SLHERPKF_					0	0	0			REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF	REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.2800598144531	2	507.279983	1012.54541	-0.078383	-3.9762E-05	-0.71418	-0.00036229	-0.79257	-0.00040205	507.279734531571	50.079	1.2699	49.928	49.52	50.79	-0.1512					104	36	5	0	0	0	0.94517	1	5211	5211		45.952	1.4209	1	19859000	+		73343	31828	51344	51427	80261	80261					0.03964295882940405
SLHERPKF	8	Unmodified	_SLHERPKF_					0	0	0			REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF	REV__ENST00000399410.7_1_16:16236589-16236823:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.27978515625	2	507.279983	1012.54541	-0.53355	-0.00027066	-0.1819	-9.2273E-05	-0.71545	-0.00036293	507.2799725785459	49.748	1.2785	49.823	49.391	50.669	0.074192					98	36	5	0	0	0	0.845	1	5074	5074		55.504	5.4797	1	21543000	+		73344	31828	51344	51427	80262	80262					0.03964295882940405
SLHFAHLKD	9	Unmodified	_SLHFAHLKD_					0	0	0		ENST00000559905.5_3_15:49912372-49912896:-|nuORF;ENST00000561064.5_2_15:49907413-49912956:-|nuORF	ENST00000559905.5_3_15:49912372-49912896:-|nuORF	ENST00000559905.5_3_15:49912372-49912896:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.284912109375	2	534.285266	1066.55598	-1.4428	-0.00077089	0.16617	8.8784E-05	-1.2767	-0.0006821	534.2855340995308	106.24	0.88681	106.11	105.53	106.42	-0.1328					64	38	3	0	0	0	0.77768	1	13225	13225		40.778	0.20554	1	194720			73345	16790	51345	51428	80263	80263					0.025362785373772567
SLHFIPERTCF	11	Unmodified	_SLHFIPERTCF_					0	0	0		ENST00000469379.5_2_16:11023067-11027744:-|nuORF;ENST00000331808.4_1_16:11023067-11035505:-|nuORF;ENST00000570992.1_1_16:11022841-11035505:-|nuORF	ENST00000469379.5_2_16:11023067-11027744:-|nuORF	ENST00000469379.5_2_16:11023067-11027744:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2684326171875	3	450.56054	1348.65979	0.33602	0.0001514	0.9097	0.00040987	1.2457	0.00056127	450.5600757724801	49.021	0.13858	49.021	48.934	49.072	0					5	3	2	0	0	0	0.024779	1	5038	5038		21.78	0.74819	1	39049			73346	12349	51346	51429	80264	80264					-0.0005918241729432339
SLHFLLIIY	9	Unmodified	_SLHFLLIIY_					0	0	0		nc|ENSG00000290724|O14609|XKRY	nc|ENSG00000290724|O14609|XKRY	nc|ENSG00000290724|O14609|XKRY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8143310546875	2	559.83406	1117.65357	-0.53774	-0.00030105	0.21609	0.00012098	-0.32165	-0.00018007	559.8342018476939	81.188	1.0293	81.046	80.454	81.483	-0.14248					50	24	3	0	0	0	0.023775	1	9739	9739		57.811	0	1	410110			73347	18828	51347	51430	80265	80265					0.09944667413515162
SLHGCLAAM	9	Unmodified	_SLHGCLAAM_					0	0	0		nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	nc|ENSG00000149443|Q9BR46|SCP2D1-AS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.26458740234375	2	451.714773	901.414993	-0.86371	-0.00039015	4.3627	0.0019707	3.499	0.0015805	451.71665110662195	33.335	0.52172	33.169	32.918	33.44	-0.16565					26	12	3	0	0	0	0.024	1	2327	2327		65.803	42.761	1	250860			73348	18373	51348	51431	80266	80266					-0.039657594319123746
SLHGKRKEI	9	Unmodified	_SLHGKRKEI_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.3206176757812	2	534.31964	1066.62473	0.22008	0.00011759	2.025	0.001082	2.2451	0.0011996	534.3205735247114	96.297	1.0643	96.304	95.905	96.969	0.0065002					58	24	4	0	0	0	0.45795	1	12259	12259		62.107	7.3311	1	1162000			73349	5020	51349	51432	80267	80267					0.09407942837083283
SLHGKRKEI	9	Unmodified	_SLHGKRKEI_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.3206787109375	2	534.31964	1066.62473	0.60604	0.00032382	1.6804	0.00089787	2.2864	0.0012217	534.3203878431744	96.401	0.76376	96.403	96.076	96.84	0.0020752					48	17	4	0	0	0	0.30449	1	12216	12216		75.043	3.7476	1	1112500			73350	5020	51349	51432	80268	80268					0.09407942837083283
SLHGKRKEI	9	Unmodified	_SLHGKRKEI_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.31964	1066.62473	0.18944	0.00010122	2.086	0.0011146	2.2754	0.0012158	534.3206313936913	96.209	0.98024	96.072	95.81	96.791	-0.13671	-0.18021	-0.00014352	NaN	75.043	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479010			73351	5020	51349	51432							0.09407942837083283
SLHGKRKEI	9	Unmodified	_SLHGKRKEI_					0	0	0		ENSG00000136485|ENST00000614556|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	ENSG00000136485|ENST00000614556|DCAF7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.31964	1066.62473	-0.64529	-0.00034479	2.9649	0.0015842	2.3196	0.0012394	534.3210865073896	96.367	0.8069	96.21	95.837	96.644	-0.15646	-0.04265	0.00079569	NaN	75.043	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591190			73352	5020	51349	51432							0.09407942837083283
SLHGSFHS	8	Unmodified	_SLHGSFHS_					0	0	0		ENSG00000138756|ENST00000502613|BMP2K;nc|ENSG00000204113|Q5H9B9|BMP2KL	ENSG00000138756|ENST00000502613|BMP2K	ENSG00000138756|ENST00000502613|BMP2K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.88214111328125	2	436.206484	870.398415	-0.31652	-0.00013807	0.63149	0.00027546	0.31496	0.00013739	436.2060209582961	39.732	0.20103	39.509	39.382	39.583	-0.22311					7	4	2	0	0	0	0.027866	1	3369	3369		18.324	0	1	49098			73353	5277	51350	51433	80269	80269					-0.04196801001990025
SLHHLIET	8	Unmodified	_SLHHLIET_					0	0	0			REV__ENSG00000152240|ENST00000282058|HAUS1	REV__ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.2607727050781	2	475.258717	948.50288	-0.16735	-7.9536E-05	4.3584	0.0020714	4.191	0.0019918	475.2605828641556	40.791	1.2894	40.566	40.187	41.476	-0.22501					89	33	5	0	0	0	0.91239	1	3528	3528		50.025	5.6474	1	5955000	+		73354	24826	51351	51434	80270	80270					0.026569007547209367
SLHHPTLI	8	Unmodified	_SLHHPTLI_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2637634277344	2	459.263802	916.513051	-0.040593	-1.8643E-05	-0.45027	-0.00020679	-0.49086	-0.00022544	459.26360749820844	41.97	0.96232	41.847	41.527	42.49	-0.12299					49	25	2	0	0	0	0.52467	1	3778	3778		83.287	8.7706	1	11769000			73355	8707	51352	51435	80271	80271					0.051455084799385986
SLHIDLASF	9	Unmodified	_SLHIDLASF_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8;REV__nc|ENSG00000069431|O60706|ABCC9	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2801208496094	2	501.766374	1001.5182	-0.086177	-4.3241E-05	-4.2339	-0.0021244	-4.3201	-0.0021677	501.7642444084804	34.225	0.62196	34.22	33.988	34.61	-0.0045624					25	15	2	0	0	0	0.024457	1	2561	2561		29.15	1.2673	1	547260	+		73356	19822;20402	51353	51436	80272	80272					0.01749767551905279
SLHIVPSQP	9	Unmodified	_SLHIVPSQP_					0	0	0		nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7332763671875	2	489.274367	976.53418	-0.046114	-2.2562E-05	-1.9327	-0.00094563	-1.9788	-0.00096819	489.27418198249217	22.985	1.0617	22.783	22.134	23.195	-0.20193					33	22	3	0	0	0	0.024021	1	859	859		58.782	5.4305	1	54972			73357	18701	51354	51437	80273	80273					0.04497473788808293
SLHLKHLN	8	Unmodified	_SLHLKHLN_					0	0	0		ENSG00000174482|ENST00000698399|LINGO2	ENSG00000174482|ENST00000698399|LINGO2	ENSG00000174482|ENST00000698399|LINGO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7311706542969	2	481.282526	960.550499	-0.45894	-0.00022088	-0.94904	-0.00045676	-1.408	-0.00067763	481.2821567012698	31.675	0.44067	31.744	31.527	31.967	0.06896					18	10	3	0	0	0	0.027866	1	2076	2076		23.042	8.3784	1	82855			73358	8472	51355	51438	80274	80274					0.06864599745551914
SLHLNVVPPVC	11	Unmodified	_SLHLNVVPPVC_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.342529296875	2	589.323534	1176.63251	-1.3476	-0.00079417	-1.1549	-0.00068062	-2.5025	-0.0014748	589.3230275826468	92.498	0.41102	92.489	92.275	92.686	-0.0082932					15	9	3	0	0	0	0.024756	1	11687	11687		16.717	0	1	86412			73359	7604	51356	51439	80275	80275					0.0512633404234748
SLHLNVVPPVC	11	Unmodified	_SLHLNVVPPVC_					0	0	0		nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF	nc|ENSG00000166783|Q9Y4F3-4|MARF1	nc|ENSG00000166783|Q9Y4F3-4|MARF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3424682617188	2	589.323534	1176.63251	-2.0466	-0.0012061	-1.4936	-0.00088024	-3.5403	-0.0020864	589.3227099263702	92.791	0.75882	92.648	92.285	93.044	-0.14356					22	17	2	0	0	0	0.024768	1	11437	11437		47.657	9.8458	1	110120			73360	7604	51356	51439	80276	80276					0.0512633404234748
SLHLQPSSIVS	11	Unmodified	_SLHLQPSSIVS_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.3238525390625	2	584.322045	1166.62954	-1.1142	-0.00065106	3.7174	0.0021722	2.6032	0.0015211	584.3240953922957	44.545	0.68924	44.44	44.134	44.823	-0.10468					52	17	4	0	0	0	0.20599	1	4183	4183		98.582	2.7668	1	2313200	+		73361	23009	51357	51440	80277	80277					0.05288782189199992
SLHQLLLVD	9	Unmodified	_SLHQLLLVD_					0	0	0		ENST00000466438.1_1_22:35653544-35654384:+|nuORF	ENST00000466438.1_1_22:35653544-35654384:+|nuORF	ENST00000466438.1_1_22:35653544-35654384:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7793579101562	2	519.303124	1036.5917	-0.376	-0.00019526	-0.57476	-0.00029847	-0.95076	-0.00049373	519.3027374803448	85.646	0.58031	85.589	85.397	85.977	-0.057617					25	13	3	0	0	0	0.024466	1	10739	10739		39.253	25.799	1	254840			73362	14812	51358	51441	80278	80278					0.07486315994401593
SLHQVSFLF	9	Unmodified	_SLHQVSFLF_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.791748046875	2	539.290017	1076.56548	-0.50115	-0.00027026	-0.1392	-7.5068E-05	-0.64035	-0.00034533	539.2898686045704	16.894	0.24229	16.687	16.569	16.812	-0.20777					9	4	3	0	0	0	0.94809	1	109	109		29.15	0	1	81022			73363	3881	51359	51442	80279	80279					0.030260468229016624
SLHSFCPL	8	Unmodified	_SLHSFCPL_					0	0	0			REV__ENST00000399683.7_1_20:3734265-3734637:-|nuORF	REV__ENST00000399683.7_1_20:3734265-3734637:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.24847412109375	2	452.223288	902.432024	-0.54322	-0.00024566	1.8404	0.00083227	1.2972	0.00058661	452.2241339985356	33.201	0.20821	33.208	33.08	33.288	0.0066261					11	5	3	0	0	0	0.027866	1	2339	2339		68.485	0	1	795090	+		73364	31836	51360	51443	80280	80280					-0.02309515554452446
SLHVDSIAL	9	Unmodified	_SLHVDSIAL_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.28515625	2	477.766374	953.518196	-0.7875	-0.00037624	1.2407	0.00059278	0.45324	0.00021654	477.7668200009924	55.513	1.3578	55.611	55.294	56.652	0.098011					63	36	4	0	0	0	0.024457	1	6068	6068		29.15	10.825	1	568630	+		73365	21307	51361	51444	80281	80281					0.03957767551878533
SLHVRVPKGFV	11	Unmodified	_SLHVRVPKGFV_					0	0	0			REV__nc|ENSG00000280987|P43243-2|MATR3	REV__nc|ENSG00000280987|P43243-2|MATR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.869873046875	2	619.87204	1237.72953	0.0094928	5.8843E-06	-4.2055	-0.0026069	-4.196	-0.002601	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	1.0292	1	12070	12070		30.318	2.2362	1	4373200	+		73366	19968	51362	51445	80282	80282					0.1201706431365892
SLHVTGQL	8	Unmodified	_SLHVTGQL_					0	0	0			REV__HERVH-int_dup4905|chr13:109269433-109270085:+|2.113040298311012|0.0594876981775034|5.15|470.0|6|1|sense	REV__HERVH-int_dup4905|chr13:109269433-109270085:+|2.113040298311012|0.0594876981775034|5.15|470.0|6|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.7398681640625	2	427.74016	853.465767	-0.30555	-0.00013069	0.68605	0.00029345	0.38051	0.00016276	427.7403623048281	22.489	1.1089	22.304	21.952	23.061	-0.18539					57	23	4	0	0	0	0.74904	1	773	773		63.306	0	1	1836000	+		73367	36116	51363	51446	80283	80283					0.03317229208948902
SLIAAATHDL	10	Unmodified	_SLIAAATHDL_					0	0	0		ENSG00000205268|ENST00000401827|PDE7A;nc|ENSG00000205268|Q13946-3|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.27716064453125	2	506.277106	1010.53966	-0.46624	-0.00023605	0.25551	0.00012936	-0.21074	-0.00010669	506.27711746553126	57.178	0.89035	57.01	56.363	57.253	-0.1672					34	21	2	0	0	0	0.57594	1	6242	6242		79.713	2.395	1	2355400			73368	10411	51364	51447	80284	80284					0.034811525806162535
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2794494628906	2	501.279315	1000.54408	-1.1445	-0.00057372	1.4214	0.00071251	0.27687	0.00013879	501.2798741746726	90.575	0.7959	90.575	90.255	91.051	0					40	18	3	0	0	0	0.51687	1	11465	11465		58.23	1.7961	1	1472200			73369	6946	51365	51448	80285	80285					0.043826170035117684
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2799377441406	2	501.279315	1000.54408	-0.16774	-8.4083E-05	0.44793	0.00022454	0.28019	0.00014045	501.27935038318776	90.564	0.87534	90.547	90.195	91.07	-0.016716					50	20	4	0	0	0	0.014034	1	11413	11413		166.68	40.865	1	1424000			73370	6946	51365	51448	80286	80286					0.043826170035117684
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2803649902344	2	501.279315	1000.54408	0.33413	0.00016749	-0.090842	-4.5537E-05	0.24328	0.00012195	501.2790909559931	90.558	0.71145	90.57	90.323	91.034	0.012726					39	16	3	0	0	0	0.077175	2	11377	11377;11390		118.74	25.548	1	1404300			73371	6946	51365	51448	80287;80288	80287					0.043826170035117684
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.279315	1000.54408	-0.98015	-0.00049133	0.90917	0.00045575	-0.070984	-3.5583E-05	501.2796715535618	90.524	0.54325	90.369	90.101	90.644	-0.1552	-0.10403	0.00042082	NaN	166.68	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479670			73372	6946	51365	51448							0.043826170035117684
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.279315	1000.54408	-0.73734	-0.00036961	0.75528	0.0003786	0.017939	8.9926E-06	501.279547874432	90.457	0.62459	90.332	90.088	90.712	-0.12513	-0.14114	0.00026654	NaN	166.68	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421220			73373	6946	51365	51448							0.043826170035117684
SLIADLEQL	9	Unmodified	_SLIADLEQL_					0	0	0		ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	ENSG00000162458|ENST00000375766|FBLIM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.279315	1000.54408	-0.028803	-1.4438E-05	-0.16602	-8.3223E-05	-0.19482	-9.7661E-05	501.27907208339565	90.582	0.66885	90.444	90.116	90.785	-0.13824	-0.028752	-0.00065712	NaN	166.68	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495740			73374	6946	51365	51448							0.043826170035117684
SLIAGSSGIL	10	Unmodified	_SLIAGSSGIL_					0	0	0			REV__ENSG00000112992|ENST00000344920|NNT	REV__ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.266845703125	2	459.26875	916.522947	-1.0678	-0.00049041	1.5138	0.00069526	0.44603	0.00020485	459.26938495698965	48.439	0.8037	48.163	47.738	48.542	-0.27598					55	21	4	0	0	0	0.96965	1	4819	4819		49.442	7.0454	1	4858700	+		73375	22035	51366	51449	80289	80289					0.06134651694674176
SLIARDLLL	9	Unmodified	_SLIARDLLL_					0	0	0			REV__tr|Q2MG95|Q2MG95_EBVB9BVLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVLF1PE=3SV=1	REV__tr|Q2MG95|Q2MG95_EBVB9BVLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVLF1PE=3SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.32025146484375	2	507.321317	1012.62808	-0.36998	-0.0001877	0.61138	0.00031017	0.2414	0.00012247	507.32146122922825	73.687	0.80511	73.416	72.883	73.688	-0.27126					44	20	4	0	0	0	0.67687	1	8963	8963		47.657	0	1	2352300	+		73376	37725	51367	51450	80290	80290					0.12227192891100458
SLIARDLLL	9	Unmodified	_SLIARDLLL_					0	0	0			REV__tr|Q2MG95|Q2MG95_EBVB9BVLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVLF1PE=3SV=1	REV__tr|Q2MG95|Q2MG95_EBVB9BVLF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVLF1PE=3SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3200378417969	2	507.321317	1012.62808	-0.30946	-0.000157	0.49545	0.00025135	0.18599	9.4359E-05	507.32144614635394	73.377	0.86268	73.386	72.735	73.598	0.0096512					46	21	4	0	0	0	0.39228	1	8885	8885		66.429	0	1	2306900	+		73377	37725	51367	51450	80291	80291					0.12227192891100458
SLIARWVS	8	Unmodified	_SLIARWVS_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.27215576171875	2	466.271627	930.528701	-0.32309	-0.00015065	0.41998	0.00019582	0.096891	4.5178E-05	466.27167990311403	36.288	0.86104	36.083	35.786	36.647	-0.20518					45	22	3	0	0	0	0.99042	1	2839	2839		38.806	4.6336	1	2779500	+		73378	36945	51368	51451	80292	80292					0.06065794996993645
SLIDFLRVV	9	Unmodified	_SLIDFLRVV_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.321533203125	2	531.321317	1060.62808	-0.61312	-0.00032576	-0.50439	-0.00026799	-1.1175	-0.00059376	531.3209441442137	94.77	0.82122	94.632	94.333	95.155	-0.13779					27	18	2	0	0	0	0.37611	1	11675	11675		67.494	17.469	1	222550			73379	7938	51369	51452	80293	80293					0.1001919289108173
SLIDFLRVV	9	Unmodified	_SLIDFLRVV_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3231201171875	2	531.321317	1060.62808	-0.023071	-1.2258E-05	-0.75174	-0.00039942	-0.77481	-0.00041168	531.3210265132936	94.769	0.68933	94.647	94.34	95.029	-0.12215					29	15	2	0	0	0	0.2101	2	11694	11694;11707		87.696	38.16	1	192940			73380	7938	51369	51452	80294;80295	80294					0.1001919289108173
SLIDFLRVV	9	Unmodified	_SLIDFLRVV_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.32080078125	2	531.321317	1060.62808	-0.33407	-0.0001775	-0.092821	-4.9318E-05	-0.42689	-0.00022682	531.3208613762946	94.89	1.1302	94.738	94.406	95.537	-0.15186					49	25	3	0	0	0	0.34489	2	11692	11680;11692		69.628	28.849	1	239510			73381	7938	51369	51452	80296;80297	80297					0.1001919289108173
SLIDFLRVV	9	Unmodified	_SLIDFLRVV_					0	0	0		ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	ENSG00000169410|ENST00000618819|PTPN9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.321317	1060.62808	-0.32493	-0.00017264	-2.4288	-0.0012905	-2.7538	-0.0014631	531.3202704408284	94.826	0.61076	94.829	94.564	95.175	0.0033722	0.11772	-0.0019309	NaN	87.696	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48441			73382	7938	51369	51452							0.1001919289108173
SLIDIVTEI	9	Unmodified	_SLIDIVTEI_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7887878417969	2	501.789515	1001.56448	0.39321	0.00019731	-0.34081	-0.00017101	0.052406	2.6297E-05	501.7891681506543	99.743	0.59586	99.738	99.343	99.939	-0.0050812					30	13	3	0	0	0	0.18915	2	12678	12678;12691		90.777	24.448	1	550550			73383	1389	51370	51453	80298;80299	80298					0.06375787663341725
SLIDIVTEI	9	Unmodified	_SLIDIVTEI_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	501.789515	1001.56448	-0.029005	-1.4554E-05	0.35198	0.00017662	0.32298	0.00016207	501.78945139541014	99.581	0.6451	99.591	99.223	99.869	0.010239	0.005709	0.00066778	NaN	90.777	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537450			73384	1389	51370	51453							0.06375787663341725
SLIDIVTEI	9	Unmodified	_SLIDIVTEI_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.789515	1001.56448	0.67507	0.00033874	-0.69529	-0.00034889	-0.020223	-1.0148E-05	501.78894825155635	99.669	0.50487	99.533	99.214	99.719	-0.13526	-0.052128	-0.00038323	NaN	90.777	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127800			73385	1389	51370	51453							0.06375787663341725
SLIDIVTEI	9	Unmodified	_SLIDIVTEI_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.789515	1001.56448	0.77574	0.00038926	-0.80765	-0.00040527	-0.031907	-1.6011E-05	501.78898980170624	99.599	0.52171	99.474	99.234	99.755	-0.12459	-0.11133	-0.00049599	NaN	90.777	26	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204040			73386	1389	51370	51453							0.06375787663341725
SLIDIVTEI	9	Unmodified	_SLIDIVTEI_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.789515	1001.56448	-0.28279	-0.0001419	0.142	7.1253E-05	-0.1408	-7.065E-05	501.78939558703286	99.731	0.58498	99.56	99.241	99.826	-0.17088	-0.025406	0.00045705	NaN	90.777	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184880			73387	1389	51370	51453							0.06375787663341725
SLIDKTTAA	9	Unmodified	_SLIDKTTAA_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC;ENST00000474635.1_2_6:34730443-34740721:+|nuORF	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.258544921875	2	460.258382	918.502212	-0.7806	-0.00035928	0.80329	0.00036972	0.02269	1.0443E-05	460.2588711712046	37.721	1.0896	37.721	37.305	38.395	0					74	31	4	0	0	0	0.30449	1	3103	3103		75.043	6.2565	1	6674300			73388	4058	51371	51454	80300	80300					0.03970061314987561
SLIDKTTAA	9	Unmodified	_SLIDKTTAA_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC;ENST00000474635.1_2_6:34730443-34740721:+|nuORF	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.25848388671875	2	460.258382	918.502212	-0.78412	-0.0003609	0.97069	0.00044677	0.18657	8.5869E-05	460.2588953860786	37.636	0.90883	37.572	37.127	38.036	-0.063385					57	25	4	0	0	0	0.10464	2	3070	3070;3082		109.48	43.049	1	6142900			73389	4058	51371	51454	80301;80302	80301					0.03970061314987561
SLIDKTTAA	9	Unmodified	_SLIDKTTAA_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC;ENST00000474635.1_2_6:34730443-34740721:+|nuORF	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.257568359375	2	460.258382	918.502212	-0.17552	-8.0786E-05	-0.056649	-2.6073E-05	-0.23217	-0.00010686	460.25825335239784	37.79	0.56668	37.611	37.404	37.971	-0.17929					33	15	3	0	0	0	0.247	1	3073	3073		82.75	22.457	1	1970100			73390	4058	51371	51454	80303	80303					0.03970061314987561
SLIDKTTAA	9	Unmodified	_SLIDKTTAA_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC;ENST00000474635.1_2_6:34730443-34740721:+|nuORF	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2582702636719	2	460.258382	918.502212	-0.94103	-0.00043312	0.8627	0.00039707	-0.078324	-3.6049E-05	460.25865904132075	37.869	0.47683	37.65	37.384	37.861	-0.21848					33	12	3	0	0	0	0.14181	1	3060	3060		101.25	29.875	1	1626600			73391	4058	51371	51454	80304	80304					0.03970061314987561
SLIDQFFGV	9	Unmodified	_SLIDQFFGV_					0	0	0		nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	nc|ENSG00000101557|P54578-2|USP14	nc|ENSG00000101557|P54578-2|USP14	MSMS	OPSCC_40_ClassI_Rep-1	4	513.2686767578125	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.75	1	102.62	102.12	103.12	-0.12931								0	0	0	0.010183	1	12760	12760		166.78	84.478	1				73392	2336	51372	51455	80305	80305					0.011666516946661432
SLIDQFFGV	9	Unmodified	_SLIDQFFGV_					0	0	0		nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	nc|ENSG00000101557|P54578-2|USP14	nc|ENSG00000101557|P54578-2|USP14	MSMS	OPSCC_40_ClassI_Rep-1	4	513.2686767578125	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.83	1	102.7	102.2	103.2	-0.12931								0	0	0	0.0023036	1	12772	12772		180.93	96.01	1				73393	2336	51372	51455	80306	80306					0.011666516946661432
SLIDQFFGV	9	Unmodified	_SLIDQFFGV_					0	0	0		nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	nc|ENSG00000101557|P54578-2|USP14	nc|ENSG00000101557|P54578-2|USP14	MSMS	OPSCC_40_ClassI_Rep-2	5	513.2689208984375	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.75	1	102.63	102.13	103.13	-0.1271								0	0	0	0.01426	1	12780	12780		157.33	77.878	1				73394	2336	51372	51455	80307	80307					0.011666516946661432
SLIDQFFGV	9	Unmodified	_SLIDQFFGV_					0	0	0		nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	nc|ENSG00000101557|P54578-2|USP14	nc|ENSG00000101557|P54578-2|USP14	MSMS	OPSCC_40_ClassI_Rep-2	5	513.268798828125	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.86	1	102.73	102.23	103.23	-0.12783								0	0	0	0.019922	1	12795	12795		131.03	40.255	1				73395	2336	51372	51455	80308	80308					0.011666516946661432
SLIDQFFGV	9	Unmodified	_SLIDQFFGV_					0	0	0		nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14	nc|ENSG00000101557|P54578-2|USP14	nc|ENSG00000101557|P54578-2|USP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2691650390625	2	513.26875	1024.52295	0.24222	0.00012432	1.7876	0.00091752	2.0298	0.0010418	513.2686480009005	102.85	1.2749	102.68	102.24	103.52	-0.17034					46	30	3	0	0	0	0.015901	4	12774	12757;12762;12774;12787		157.33	63.323	1	797890			73396	2336	51372	51455	80309;80310;80311;80312	80311					0.011666516946661432
SLIEAVKDELE	11	Unmodified	_SLIEAVKDELE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	622.3491821289062	2	623.332276	1244.65	-0.14053	-8.7597E-05	3.7216	0.0023198	3.581	0.0022322	623.3342413410862	94.449	1.5834	94.302	93.738	95.322	-0.14771					46	36	2	0	0	0	0.024774	1	11703	11703		23.523	3.5259	1	76504	+		73397	27726	51373	51456	80313	80313					0.03745908058317582
SLIEAVKDELE	11	Unmodified	_SLIEAVKDELE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	623.332276	1244.65	-0.25211	-0.00015715	3.3308	0.0020762	3.0787	0.0019191	623.3344476404169	94.476	0.84912	94.476	94.244	95.093	0	0.14547	-0.00047499	NaN	23.523	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85083	+		73398	27726	51373	51456							0.03745908058317582
SLIEAVKDELE	11	Unmodified	_SLIEAVKDELE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	623.332276	1244.65	-0.80123	-0.00049943	3.8647	0.002409	3.0634	0.0019095	623.3346844958699	94.472	1.0147	94.478	94.17	95.185	0.0059814	0.14657	0.00019053	NaN	23.523	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65954	+		73399	27726	51373	51456							0.03745908058317582
SLIEAVKDELE	11	Unmodified	_SLIEAVKDELE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	623.332276	1244.65	-0.44474	-0.00027722	4.0648	0.0025337	3.62	0.0022565	623.3344740281466	94.362	1.2778	94.224	93.659	94.937	-0.13779	-0.10688	0.00043999	NaN	23.523	41	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59702	+		73400	27726	51373	51456							0.03745908058317582
SLIEAVKDELE	11	Unmodified	_SLIEAVKDELE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	623.332276	1244.65	-0.66214	-0.00041273	2.472	0.0015409	1.8099	0.0011281	623.3327874807239	94.297	1.276	94.175	93.322	94.598	-0.12215	-0.15579	-0.0015457	NaN	23.523	44	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77075	+		73401	27726	51373	51456							0.03745908058317582
SLIENQILL	9	Unmodified	_SLIENQILL_					0	0	0		nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-5|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8109741210938	2	521.810782	1041.60701	-1.1692	-0.00061009	1.0805	0.00056382	-0.088679	-4.6273E-05	521.8112202419093	83.371	1.1182	83.371	82.835	83.954	0					61	25	4	0	0	0	0.014918	2	10421	10409;10421		162.25	31.221	1	1817700			73402	6225	51374	51457	80314;80315	80315					0.08787182791570558
SLIENQILL	9	Unmodified	_SLIENQILL_					0	0	0		nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-5|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.8109130859375	2	521.810782	1041.60701	-0.010488	-5.4728E-06	-0.043123	-2.2502E-05	-0.053611	-2.7975E-05	521.8106311486903	83.45	0.94212	83.36	82.958	83.9	-0.090446					57	21	4	0	0	0	0.013293	2	10386	10386;10398		176.09	30.244	1	1841200			73403	6225	51374	51457	80316;80317	80316					0.08787182791570558
SLIENQILL	9	Unmodified	_SLIENQILL_					0	0	0		nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-5|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	nc|ENSG00000151718|Q6AWC2-3|WWC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8107299804688	2	521.810782	1041.60701	-0.90344	-0.00047143	0.77314	0.00040343	-0.1303	-6.7992E-05	521.811076256161	83.322	1.3697	83.348	82.531	83.901	0.026558					69	31	4	0	0	0	0.014918	3	10334	10322;10334;10345		162.25	18.366	1	1750100			73404	6225	51374	51457	80318;80319;80320	80319					0.08787182791570558
SLIEQTTAL	9	Unmodified	_SLIEQTTAL_					0	0	0		nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.27069091796875	2	488.27149	974.528426	-0.42141	-0.00020576	0.84396	0.00041208	0.42254	0.00020632	488.27175209872576	65.275	1.2324	65.275	64.873	66.105	0					90	33	4	0	0	0	0.013924	3	7743	7717;7728;7743		167.23	76.452	1	5971900			73405	18172	51375	51458	80321;80322;80323	80323					0.040143304864727725
SLIEQTTAL	9	Unmodified	_SLIEQTTAL_					0	0	0		nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2718811035156	2	488.27149	974.528426	-0.49679	-0.00024257	0.93528	0.00045667	0.43849	0.0002141	488.271830840499	65.597	1.3207	65.324	64.9	66.221	-0.27283					88	35	4	0	0	0	0.01388	3	7755	7730;7741;7755		195.06	79.604	1	4936300			73406	18172	51375	51458	80324;80325;80326	80326					0.040143304864727725
SLIEQTTAL	9	Unmodified	_SLIEQTTAL_					0	0	0		nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2713317871094	2	488.27149	974.528426	-0.49162	-0.00024005	0.82781	0.0004042	0.33619	0.00016415	488.2717644941004	65.299	1.3137	65.336	64.891	66.205	0.037384					83	35	4	0	0	0	0.015064	3	7647	7635;7647;7658		195.06	72.887	1	6898400			73407	18172	51375	51458	80327;80328;80329	80328					0.040143304864727725
SLIEYEFRV	9	Unmodified	_SLIEYEFRV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.3057861328125	2	578.305864	1154.59717	-0.50141	-0.00028997	1.1743	0.0006791	0.67289	0.00038913	578.3065496941524	71.286	0.57516	71.286	71.105	71.68	0					43	14	4	0	0	0	0.18994	1	8650	8650		90.601	17.722	1	2671900			73408	371	51376	51459	80330	80330					0.026059947861767796
SLIEYEFRV	9	Unmodified	_SLIEYEFRV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.3055419921875	2	578.305864	1154.59717	0.22418	0.00012964	1.1654	0.00067396	1.3896	0.00080361	578.3062905813888	71.637	1.0572	71.348	71.036	72.093	-0.28858					65	27	5	0	0	0	0.33603	1	8667	8667		70.816	16.094	1	2306000			73409	371	51376	51459	80331	80331					0.026059947861767796
SLIEYEFRV	9	Unmodified	_SLIEYEFRV_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.306396484375	2	578.305864	1154.59717	-0.089276	-5.1629E-05	0.52022	0.00030085	0.43095	0.00024922	578.3061441200052	71.42	0.60338	71.431	71.2	71.803	0.010735					45	15	4	0	0	0	0.247	2	8573	8573;8585		82.75	9.8712	1	2359800			73410	371	51376	51459	80332;80333	80332					0.026059947861767796
SLIFSLHQS	9	Unmodified	_SLIFSLHQS_					0	0	0			REV__ENST00000533866.1_1_19:52146610-52148823:-|nuORF	REV__ENST00000533866.1_1_19:52146610-52148823:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3076171875	2	516.279649	1030.54475	0.44036	0.00022735	4.0452	0.0020885	4.4856	0.0023158	516.2810554373741	88.011	0.98783	87.984	87.7	88.688	-0.027657					52	23	3	0	0	0	0.02435	1	11035	11035		51.335	17.82	1	2149200	+		73411	29053	51377	51460	80334	80334					0.030694564432451443
SLIGESNFL	9	Unmodified	_SLIGESNFL_					0	0	0		ENST00000401878.7_2_7:155573289-155573589:+|nuORF	ENST00000401878.7_2_7:155573289-155573589:+|nuORF	ENST00000401878.7_2_7:155573289-155573589:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.25860595703125	2	490.258382	978.502212	-0.27758	-0.00013609	2.0379	0.0009991	1.7603	0.00086302	490.2598634062466	102.19	1.7715	102.19	101.86	103.63	0					66	41	2	0	0	0	0.82115	1	13102	13102		37.812	3.639	1	458520			73412	13677	51378	51461	80335	80335					0.012100613150096251
SLIGNLVTK	9	Unmodified	_SLIGNLVTK_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2952575683594	2	472.792392	943.570232	0.34402	0.00016265	-0.49079	-0.00023204	-0.14677	-6.9393E-05	472.7920166451061	55.465	0.49778	55.309	55.093	55.591	-0.15601					39	13	4	0	0	0	0.024495	1	6077	6077		9.1829	0	1	1902700	+		73413	22280	51379	51462	80336	80336					0.09618930965655181
SLIHQHIM	8	Oxidation (M)	_SLIHQHIM(Oxidation (M))_		SLIHQHIM(1)		SLIHQHIM(83)	0	0	1			REV__ENST00000455773.7_1_10:12240750-12259375:+|nuORF	REV__ENST00000455773.7_1_10:12240750-12259375:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7588806152344	2	497.760569	993.506586	-1.6707	-0.00083161	-1.8198	-0.00090584	-3.4905	-0.0017374	497.7595527982125	60.283	1.4285	60.362	59.974	61.402	0.078884					114	37	4	0	0	0	0.52467	1	6843	6843		83.287	14.802	1	6635200	+		73414	32783	51380	51463	80337	80337		899			0.009572472569288948
SLIILVSQT	9	Unmodified	_SLIILVSQT_					0	0	0		ENST00000358065.4_1_3:4355077-4355116:+|nuORF	ENST00000358065.4_1_3:4355077-4355116:+|nuORF	ENST00000358065.4_1_3:4355077-4355116:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.28173828125	2	487.30005	972.585547	-0.27786	-0.0001354	2.0183	0.0009835	1.7404	0.0008481	487.30039125463986	64.592	1.2253	64.336	63.959	65.184	-0.25563					51	30	4	0	0	0	0.024506	1	7451	7451		16.473	0	1	330230			73415	12709	51381	51464	80338	80338					0.09815797762848888
SLIISFICLL	10	Unmodified	_SLIISFICLL_					0	0	0			REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	REV__ENST00000495933.1_1_2:46842057-46842303:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2793579101562	2	561.335578	1120.6566	0.34445	0.00019335	3.0886	0.0017337	3.433	0.0019271	561.3371555160219	85	0.49414	84.797	84.544	85.038	-0.20329					21	11	3	0	0	0	0.03519	1	10303	10303		51.335	7.2187	1	217490	+		73416	24787	51382	51465	80339	80339					0.10110174476017164
SLIITRATK	9	Unmodified	_SLIITRATK_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7947082519531	2	501.818941	1001.62333	-0.45503	-0.00022834	4.182	0.0020986	3.727	0.0018703	501.82086991182905	50.412	0.83294	50.412	49.842	50.675	0					41	24	3	0	0	0	0.024457	1	5207	5207		21.96	0	1	369390	+		73417	24336	51383	51466	80340	80340					0.12258308748312174
SLIKLSKLD	9	Unmodified	_SLIKLSKLD_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2740478515625	2	508.82115	1015.62775	-0.33283	-0.00016935	-0.53979	-0.00027465	-0.87261	-0.000444	508.82053782339494	44.809	0.31601	44.846	44.715	45.031	0.036903					14	8	2	0	0	0	0.024477	1	4238	4238		14.865	3.3539	1	119470	+		73418	26571	51384	51467	80341	80341					0.12055773171221063
SLILEKSQ	8	Unmodified	_SLILEKSQ_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14;nc|ENSG00000106443|O94880-2|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.22515869140625	2	459.26875	916.522947	-0.64226	-0.00029497	-0.41597	-0.00019104	-1.0582	-0.00048601	459.26833151910404	26.308	0.92807	26.072	25.948	26.876	-0.23603					62	24	4	0	0	0	0.027866	1	1331	1331		60.972	0	1	4835500			73419	2789	51385	51468	80342	80342					0.06134651694662807
SLILITLSR	9	Unmodified	_SLILITLSR_					0	0	0			REV__ENST00000555408.5_1_12:56361645-56362592:+|nuORF	REV__ENST00000555408.5_1_12:56361645-56362592:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2798156738281	2	508.329142	1014.64373	-0.68101	-0.00034618	-4.0895	-0.0020788	-4.7705	-0.002425	508.32698697612705	48.157	0.46904	48.157	47.875	48.344	0					18	13	2	0	0	0	0.024405	1	4874	4874		20.947	7.9877	1	302850	+		73420	35008	51386	51469	80343	80343					0.13699479408148818
SLILLVQIS	9	Unmodified	_SLILLVQIS_					0	0	0		ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	ENST00000535340.5_1_11:18591643-18610207:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.782470703125	2	493.318243	984.621933	-0.26652	-0.00013148	-2.2536	-0.0011117	-2.5201	-0.0012432	493.3170828874761	19.92	0.57251	19.815	19.605	20.178	-0.10477					23	11	3	0	0	0	0.024263	1	503	503		71.296	12.514	1	197030			73421	16348	51387	51470	80344	80344					0.12900674659567812
SLILPDKTDF	10	Unmodified	_SLILPDKTDF_					0	0	0			REV__ENSG00000124571|ENST00000265351|XPO5	REV__ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8140258789062	2	574.813522	1147.61249	-0.22778	-0.00013093	1.2697	0.00072983	1.0419	0.0005989	574.8142192993541	47.684	0.50793	47.587	47.384	47.892	-0.097553					17	13	2	0	0	0	0.03519	1	4676	4676		24.519	0	1	244660	+		73422	22773	51388	51471	80345	80345					0.044588615833845324
SLIMTQQQRIH	11	Unmodified	_SLIMTQQQRIH_					0	0	0		ENSG00000197472|ENST00000339986|ZNF695	ENSG00000197472|ENST00000339986|ZNF695	ENSG00000197472|ENST00000339986|ZNF695	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.7699279785156	3	452.246844	1353.7187	-0.62177	-0.00028119	1.7696	0.00080032	1.1479	0.00051912	452.24786453214426	21.938	0.24256	21.736	21.566	21.808	-0.20199					7	4	2	0	0	0	0.02477	1	691	691		22.562	5.3948	1	13721			73423	10005	51389	51472	80346	80346					0.05599293877071432
SLINETTLI	9	Unmodified	_SLINETTLI_					0	0	0			REV__ENSG00000198146|ENST00000356321|ZNF770	REV__ENSG00000198146|ENST00000356321|ZNF770	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7580871582031	2	502.28714	1002.55973	0.16579	8.3275E-05	-0.93495	-0.00046961	-0.76916	-0.00038634	502.2873723451338	37.172	0.4761	37.108	36.866	37.342	-0.063385					19	12	2	0	0	0	0.024263	1	2969	2969		60.972	16.855	1	155690	+		73424	28390	51390	51473	80347	80347					0.05854903520571497
SLINLSLIN	9	Unmodified	_SLINLSLIN_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3067626953125	2	493.797675	985.580796	0.37881	0.00018705	-0.16805	-8.2985E-05	0.21075	0.00010407	493.7972942716476	55.973	0.38987	55.973	55.645	56.035	0					21	10	3	0	0	0	0.015636	1	6224	6224		113.41	11.811	1	1130300	+		73425	23099	51391	51474	80348	80348					0.08742913620096715
SLINLSLIN	9	Unmodified	_SLINLSLIN_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.797675	985.580796	-1.0009	-0.00049424	0.59716	0.00029488	-0.40374	-0.00019937	493.79766572801043	55.965	0.60812	55.809	55.607	56.215	-0.15655	-0.09029	0.00049407	NaN	113.41	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355360	+		73426	23099	51391	51474							0.08742913620096715
SLINLSLIN	9	Unmodified	_SLINLSLIN_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.797675	985.580796	0.15692	7.7487E-05	-0.72942	-0.00036018	-0.5725	-0.0002827	493.796920783962	56.093	0.4893	55.877	55.668	56.157	-0.21607	-0.02261	-0.00081605	NaN	113.41	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350620	+		73427	23099	51391	51474							0.08742913620096715
SLINLSLIN	9	Unmodified	_SLINLSLIN_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.797675	985.580796	-0.86171	-0.00042551	-0.080941	-3.9969E-05	-0.94265	-0.00046548	493.7973669466405	56.108	0.60188	55.892	55.637	56.239	-0.21551	-0.0071124	-0.00017562	NaN	113.41	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361270	+		73428	23099	51391	51474							0.08742913620096715
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.8133544921875	2	507.813325	1013.6121	-0.34608	-0.00017575	-0.18395	-9.3411E-05	-0.53003	-0.00026916	507.813235045743	93.073	1.7354	93.073	92.708	94.444	0					102	41	5	0	0	0	4.5665E-06	7	11805	11794;11805;11816;11829;11841;11853;11868		243.29	81.036	1	11846000			73429	5072	51392	51475	80349;80350;80351;80352;80353;80354;80355	80350					0.1058348665419544
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.81341552734375	2	507.813325	1013.6121	-0.50636	-0.00025713	-0.068713	-3.4893E-05	-0.57507	-0.00029203	507.8133046843586	93.022	2.3029	93.017	92.647	94.95	-0.0042038					111	54	5	0	0	0	4.5665E-06	7	11787	11754;11764;11775;11787;11799;11812;11827		258.83	77.956	1	10337000			73430	5072	51392	51475	80356;80357;80358;80359;80360;80361;80362	80359					0.1058348665419544
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.8133239746094	2	507.813325	1013.6121	-0.21024	-0.00010676	-0.32858	-0.00016686	-0.53882	-0.00027362	507.8131583210062	93.027	2.2972	93.035	92.672	94.969	0.0077286					114	54	5	0	0	0	7.5011E-06	7	11724	11714;11724;11734;11746;11760;11773;11786		228.31	70.979	1	12245000			73431	5072	51392	51475	80363;80364;80365;80366;80367;80368;80369	80364					0.1058348665419544
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.813232421875	2	507.813325	1013.6121	-1.5046	-0.00076406	1.155	0.00058652	-0.34962	-0.00017754	507.81385662665474	92.947	1.0367	92.804	92.488	93.525	-0.14356					68	23	4	0	0	0	0.00015509	5	11419	11409;11419;11431;11443;11459		199.89	48.168	1	3429200			73432	5072	51392	51475	80370;80371;80372;80373;80374	80371					0.1058348665419544
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8133850097656	2	507.813325	1013.6121	-0.12508	-6.3517E-05	-0.24631	-0.00012508	-0.37138	-0.00018859	507.81314584261366	92.958	1.0372	92.836	92.546	93.583	-0.12215					72	23	5	0	0	0	0.002678	4	11431	11431;11440;11452;11464		186.41	64.235	1	3350300			73433	5072	51392	51475	80375;80376;80377;80378	80375					0.1058348665419544
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.8133544921875	2	507.813325	1013.6121	-0.11415	-5.7968E-05	-0.38623	-0.00019613	-0.50038	-0.0002541	507.8131187019119	93.034	1.0791	92.89	92.576	93.655	-0.1441					76	24	4	0	0	0	0.00015509	4	11425	11416;11425;11437;11449		199.89	58.371	1	3570300			73434	5072	51392	51475	80379;80380;80381;80382	80380					0.1058348665419544
SLINVGSL	8	Unmodified	_SLINVGSL_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF;ENST00000520536.1_1_8:22475798-22477192:+|nuORF	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5369567871094	2	401.737086	801.459619	-0.67859	-0.00027261	1.0244	0.00041155	0.34583	0.00013893	401.73743717086865	32.781	0.52342	32.616	32.355	32.879	-0.16565					32	12	4	0	0	0	0.027866	1	2238	2238		35.618	7.736	1	580090			73435	6711	51393	51476	80383	80383					0.050947109774256205
SLIPDIIPLY	10	Unmodified	_SLIPDIIPLY_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.28662109375	2	572.336633	1142.65871	-0.1152	-6.5931E-05	-0.41231	-0.00023598	-0.5275	-0.00030191	572.3362242037659	52.653	0.48534	52.463	52.227	52.712	-0.18981					21	11	2	0	0	0	0.03519	1	5475	5475		71.296	10.324	1	532700	+		73436	20332	51394	51477	80384	80384					0.09308926485482516
SLIPLKPLT	9	Unmodified	_SLIPLKPLT_					0	0	0		ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.82855224609375	2	491.320786	980.627018	0.2237	0.00010991	1.1071	0.00054395	1.3308	0.00065386	491.3212902599436	66.373	0.44833	66.373	66.224	66.672	0					22	15	2	0	0	0	0.024427	1	7905	7905		42.396	13.247	1	1651500			73437	2017	51395	51478	80385	80385					0.1359297852217196
SLIPQAGSV	9	Unmodified	_SLIPQAGSV_					0	0	0			REV__nc|ENSG00000105355|O60664-4|PLIN3	REV__nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.2481994628906	2	436.247818	870.481082	-0.19557	-8.5319E-05	0.31037	0.0001354	0.1148	5.008E-05	436.24787409794766	34.122	1.2608	33.915	33.511	34.771	-0.20696					84	31	4	0	0	0	0.067814	1	2499	2499		122.18	1.555	1	8826400	+		73438	21515	51396	51479	80386	80386					0.040660960061472906
SLIPTSPQV	9	Unmodified	_SLIPTSPQV_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2688293457031	2	471.26875	940.522947	0.073094	3.4447E-05	0.16323	7.6927E-05	0.23633	0.00011137	471.268761887639	66.945	1.3116	66.945	66.519	67.831	0					88	32	5	0	0	0	0.086035	3	7978	7966;7978;7992		115.49	21.56	1	7614600			73439	8875	51397	51480	80387;80388;80389	80388					0.05030651694664812
SLIPTSPQV	9	Unmodified	_SLIPTSPQV_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2686462402344	2	471.26875	940.522947	0.072451	3.4144E-05	0.071321	3.3611E-05	0.14377	6.7755E-05	471.2686955467828	67.232	1.2774	66.943	66.623	67.901	-0.28834					84	31	4	0	0	0	0.013065	3	7991	7970;7979;7991		171.53	54.628	1	7855900			73440	8875	51397	51480	80390;80391;80392	80392					0.05030651694664812
SLIPTSPQV	9	Unmodified	_SLIPTSPQV_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2686767578125	2	471.26875	940.522947	0.3322	0.00015656	-0.22342	-0.00010529	0.10879	5.1268E-05	471.2685481476497	66.94	1.181	66.964	66.643	67.824	0.023911					89	28	5	0	0	0	0.03201	3	7901	7889;7901;7913		139.97	19.349	1	7533000			73441	8875	51397	51480	80393;80394;80395	80394					0.05030651694664812
SLIQCRKEF	9	Unmodified	_SLIQCRKEF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.30126953125	2	562.300059	1122.58556	1.6444	0.00092464	2.8788	0.0016187	4.5232	0.0025434	562.3016599559156	23.653	0.80581	23.462	23.167	23.973	-0.19117					46	18	4	0	0	0	0.56934	1	943	943		54.776	6.8168	1	1323400			73442	7177	51398	51481	80396	80396					0.02917474491187022
SLIQFAQPN	9	Unmodified	_SLIQFAQPN_					0	0	0			REV__ENSG00000129151|ENST00000263182|BBOX1	REV__ENSG00000129151|ENST00000263182|BBOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2740478515625	2	509.271824	1016.5291	-0.3279	-0.00016699	-0.5381	-0.00027404	-0.866	-0.00044103	509.2713513477291	45.015	0.68733	45.059	44.756	45.444	0.043877					32	19	2	0	0	0	0.024477	1	4238	4238		9.7057	3.7845	1	1392000	+		73443	23032	51399	51482	80397	80397					0.021491699261900976
SLIQFAQPN	9	Unmodified	_SLIQFAQPN_					0	0	0			REV__ENSG00000129151|ENST00000263182|BBOX1	REV__ENSG00000129151|ENST00000263182|BBOX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.271824	1016.5291	-0.76858	-0.00039142	-0.018055	-9.1947E-06	-0.78664	-0.00040061	509.2715713811509	44.974	0.65298	44.974	44.657	45.31	0	-0.032927	0.00012993	NaN	26.693	48	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1354600	+		73444	23032	51399	51482							0.021491699261900976
SLIQFAQPN	9	Unmodified	_SLIQFAQPN_					0	0	0			REV__ENSG00000129151|ENST00000263182|BBOX1	REV__ENSG00000129151|ENST00000263182|BBOX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.271824	1016.5291	-0.8197	-0.00041745	0.08138	4.1445E-05	-0.73832	-0.00037601	509.2716170347948	45.136	0.85748	44.988	44.557	45.415	-0.1488	-0.019449	0.00023121	NaN	26.693	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1455800	+		73445	23032	51399	51482							0.021491699261900976
SLIRQFTL	8	Unmodified	_SLIRQFTL_					0	0	0			REV__nc|ENSG00000100890|O15091-3|PRORP	REV__nc|ENSG00000100890|O15091-3|PRORP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.29229736328125	2	489.292559	976.570566	-0.4915	-0.00024049	1.3142	0.00064305	0.82275	0.00040256	489.29298572711707	66.192	0.71687	66.222	65.89	66.607	0.030106					47	21	3	0	0	0	0.44658	1	7785	7785		90.777	0	1	5435400	+		73446	21160	51400	51483	80398	80398					0.0813435068552053
SLIRQLTK	8	Unmodified	_SLIRQLTK_					0	0	0			REV__ENST00000313401.3_1_17:30816702-30816975:+|nuORF	REV__ENST00000313401.3_1_17:30816702-30816975:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7914733886719	2	479.805834	957.597115	0.093004	4.4624E-05	-0.95461	-0.00045803	-0.86161	-0.00041341	479.80518485957555	30.514	0.50002	30.365	30.056	30.556	-0.14952					27	11	3	0	0	0	0.027866	1	1938	1938		24.203	6.8378	1	327480	+		73447	30230	51401	51484	80399	80399					0.1166203957683365
SLIRTSPKV	9	Unmodified	_SLIRTSPKV_					0	0	0			REV__ENST00000473131.5_1_20:5924535-5931132:-|nuORF	REV__ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8082275390625	2	500.811116	999.60768	-0.15301	-7.6627E-05	0.17282	8.6549E-05	0.019813	9.9224E-06	500.81107751280337	42.448	1.2791	42.315	42.049	43.328	-0.13219					95	35	4	0	0	0	0.33245	1	3886	3886		71.296	3.802	1	6064900	+		73448	20846	51402	51485	80400	80400					0.10786022231286552
SLISKRNK	8	Unmodified	_SLISKRNK_					0	0	0			REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	REV__nc|ENSG00000116793|Q9UMS5-2|PHTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.751953125	2	473.295633	944.576714	0.86719	0.00041044	1.2789	0.00060529	2.1461	0.0010157	473.2960350901182	57.528	0.74266	57.353	56.866	57.608	-0.1749					29	19	2	0	0	0	0.027866	1	6371	6371		20.482	0	1	379300	+		73449	22306	51403	51486	80401	80401					0.1022086891704248
SLISLTKLN	9	Unmodified	_SLISLTKLN_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.80596923828125	2	494.8055	987.596446	-0.048396	-2.3947E-05	-0.54293	-0.00026864	-0.59132	-0.00029259	494.8050962965184	81.876	1.3308	81.876	81.548	82.878	0					66	31	3	0	0	0	0.45795	1	10205	10205		62.107	7.3311	1	1623200	+		73450	27181	51404	51487	80402	80402					0.10215200137133706
SLISLTKLN	9	Unmodified	_SLISLTKLN_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.8055	987.596446	0.11906	5.8911E-05	-0.52833	-0.00026142	-0.40927	-0.00020251	494.80513172298487	81.89	0.94142	81.661	81.353	82.295	-0.2289	-0.12679	-0.00011862	NaN	62.107	48	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	727130	+		73451	27181	51404	51487							0.10215200137133706
SLISLTKLN	9	Unmodified	_SLISLTKLN_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.8055	987.596446	0.21247	0.00010513	-0.6966	-0.00034468	-0.48414	-0.00023955	494.8050656140801	81.933	0.81227	81.74	81.419	82.231	-0.19334	-0.048053	-0.00028514	NaN	62.107	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504290	+		73452	27181	51404	51487							0.10215200137133706
SLISLTKLN	9	Unmodified	_SLISLTKLN_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.8055	987.596446	-0.73203	-0.00036221	0.24411	0.00012078	-0.48792	-0.00024143	494.805534151852	81.875	0.64268	81.733	81.441	82.084	-0.14249	-0.055301	0.0006458	NaN	62.107	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271060	+		73453	27181	51404	51487							0.10215200137133706
SLISTEDHPI	10	Unmodified	_SLISTEDHPI_					0	0	0		ENSG00000066185|ENST00000372565|ZMYND12	ENSG00000066185|ENST00000372565|ZMYND12	ENSG00000066185|ENST00000372565|ZMYND12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.7509155273438	2	556.285128	1110.5557	-0.67338	-0.00037459	1.0785	0.00059998	0.40516	0.00022538	556.2854159825089	65.013	0.51843	64.757	64.504	65.022	-0.25563					30	12	4	0	0	0	0.03519	1	7398	7398		40.778	12.896	1	560300			73454	1334	51405	51488	80403	80403					0.004848140268450152
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79229736328125	2	487.792058	973.569563	-0.24082	-0.00011747	0.11959	5.8333E-05	-0.12124	-5.9139E-05	487.792085501976	78.306	1.7835	78.306	77.918	79.701	0					134	42	6	0	0	0	0.049585	3	9705	9693;9705;9717		128.86	9.3043	1	11242000			73455	5083	51406	51489	80404;80405;80406	80405					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7919616699219	2	487.792058	973.569563	-0.29363	-0.00014323	-0.70224	-0.00034255	-0.99587	-0.00048578	487.79185285251293	96.899	0.84338	96.899	96.571	97.415	0					37	18	3	0	0	0	0.27161	1	12354	12354		79.451	18.479	1	366250			73456	5083	51406	51489	80407	80407					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79205322265625	2	487.792058	973.569563	0.43895	0.00021412	-0.57212	-0.00027908	-0.13317	-6.4961E-05	487.7917661397378	78.47	1.6991	78.278	77.933	79.632	-0.1921					129	40	5	0	0	0	0.028181	1	9694	9694		143.02	23.463	1	10902000			73457	5083	51406	51489	80408	80408					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79248046875	2	487.792058	973.569563	-0.64793	-0.00031605	0.48175	0.00023499	-0.16618	-8.106E-05	487.79227441876844	78.361	1.7343	78.377	77.989	79.724	0.015907					129	41	5	0	0	0	0.049585	1	9640	9640		128.86	22.446	1	12051000			73458	5083	51406	51489	80409	80409					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.79180908203125	2	487.792058	973.569563	0.34339	0.0001675	-2.4492	-0.0011947	-2.1058	-0.0010272	487.79092235400344	96.371	1.7522	96.235	95.853	97.605	-0.1367					89	39	4	0	0	0	0.27161	1	11954	11954		79.451	16.145	1	805910			73459	5083	51406	51489	80410	80410					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7917175292969	2	487.792058	973.569563	0.89451	0.00043633	-2.4097	-0.0011754	-1.5152	-0.00073908	487.7908895121262	96.705	1.7766	96.582	95.509	97.285	-0.12305					55	40	2	0	0	0	0.18915	3	11951	11951;11963;11976		90.777	16.802	1	797160			73460	5083	51406	51489	80411;80412;80413	80411					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7918395996094	2	487.792058	973.569563	0.015184	7.4064E-06	-1.4384	-0.00070166	-1.4233	-0.00069425	487.79133905580403	96.734	1.8267	96.573	95.483	97.31	-0.16106					82	41	4	0	0	0	0.4752	3	11943	11923;11943;11954		60.972	13.056	1	1065200			73461	5083	51406	51489	80414;80415;80416	80415					0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	487.792058	973.569563	0.52648	0.00025681	-3.4856	-0.0017002	-2.9591	-0.0014434	487.7904205700715	96.187	0.75185	96.193	95.732	96.484	0.0065079	-0.043725	-0.00034206	NaN	79.451	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	911740			73462	5083	51406	51489							0.08172091525955238
SLISTILEV	9	Unmodified	_SLISTILEV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	487.792058	973.569563	0.53995	0.00026338	-1.8677	-0.00091106	-1.3278	-0.00064768	487.7914728589058	96.767	0.88394	96.776	96.487	97.37	0.0089111	0.02703	-0.00050195	NaN	90.777	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373370			73463	5083	51406	51489							0.08172091525955238
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7826538085938	2	533.782025	1065.5495	-1.2379	-0.00066079	0.80436	0.00042935	-0.43358	-0.00023144	533.7823826308247	75.751	1.1094	75.751	75.447	76.556	0					50	28	2	0	0	0	0.016838	3	9312	9312;9325;9338		152.63	78.117	1	3803000			73464	12412	51407	51490	80417;80418;80419	80417					0.019343405859899576
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.78271484375	2	533.782025	1065.5495	-0.8135	-0.00043423	0.36319	0.00019387	-0.4503	-0.00024036	533.7821446349689	75.916	1.225	75.671	75.409	76.634	-0.24455					54	31	2	0	0	0	0.028181	3	9324	9301;9311;9324		143.02	80.912	1	4131900			73465	12412	51407	51490	80420;80421;80422	80422					0.019343405859899576
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.782958984375	2	533.782025	1065.5495	-0.094736	-5.0569E-05	-0.26994	-0.00014409	-0.36467	-0.00019466	533.7818167513107	75.722	1.1817	75.734	75.471	76.653	0.011635					53	30	2	0	0	0	0.016838	3	9241	9231;9241;9253		152.63	70.393	1	4398700			73466	12412	51407	51490	80423;80424;80425	80424					0.019343405859899576
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.782025	1065.5495	-0.66677	-0.00035591	0.38827	0.00020725	-0.2785	-0.00014866	533.7820555183857	75.889	0.98145	75.616	75.267	76.248	-0.27267	-0.027774	0.00019822	NaN	152.63	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1101400			73467	12412	51407	51490							0.019343405859899576
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.782025	1065.5495	-0.59479	-0.00031749	0.53245	0.00028421	-0.062339	-3.3275E-05	533.7822025361863	75.874	0.94901	75.616	75.358	76.307	-0.25866	-0.028499	0.00035214	NaN	152.63	45	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1435300			73468	12412	51407	51490							0.019343405859899576
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.782025	1065.5495	-0.2036	-0.00010868	-0.075056	-4.0064E-05	-0.27866	-0.00014874	533.7818560013527	75.652	0.97953	75.477	75.194	76.174	-0.17548	-0.16755	-0.00029641	NaN	152.63	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1288800			73469	12412	51407	51490							0.019343405859899576
SLITALLPFV	10	Unmodified	_SLITALLPFV_					0	0	0			REV__ENSG00000182083|ENST00000319423|OR6B2	REV__ENSG00000182083|ENST00000319423|OR6B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.3045043945312	2	537.333893	1072.65323	-0.052242	-2.8071E-05	-3.2664	-0.0017551	-3.3186	-0.0017832	537.3321804695133	68.89	0.11983	68.647	68.587	68.707	-0.24277					4	2	2	0	0	0	0.03519	1	7984	7984		26.693	11.051	1	88734	+		73470	27447	51408	51491	80426	80426					0.11981247693665864
SLITLIEKV	9	Unmodified	_SLITLIEKV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7789306640625	2	508.323525	1014.6325	-0.296	-0.00015046	-0.14704	-7.4746E-05	-0.44304	-0.00022521	508.32337437314607	78.804	1.5454	78.612	78.298	79.843	-0.1921					67	36	2	0	0	0	0.024261	1	9747	9747		74.255	17.534	1	884760			73471	2912	51409	51492	80427	80427					0.1257665731400266
SLITLIEKV	9	Unmodified	_SLITLIEKV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.77838134765625	2	508.323525	1014.6325	-0.2092	-0.00010634	-0.29484	-0.00014987	-0.50404	-0.00025622	508.32330494115723	78.696	1.4943	78.714	78.4	79.894	0.018677					64	35	2	0	0	0	0.023655	1	9673	9673		90.37	23.941	1	918700			73472	2912	51409	51492	80428	80428					0.1257665731400266
SLITPLQAV	9	Unmodified	_SLITPLQAV_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7780456542969	2	471.286943	940.559333	0.31559	0.00014873	0.14063	6.6277E-05	0.45622	0.00021501	471.2865598558905	78.955	0.70944	78.763	78.257	78.966	-0.1921					27	16	3	0	0	0	0.024344	1	9745	9745		64.207	3.2353	1	242400			73473	10867	51410	51493	80429	80429					0.0866752859137705
SLITQHESP	9	Unmodified	_SLITQHESP_					0	0	0			REV__nc|ENSG00000136536|Q9H992-2|MARCHF7	REV__nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81121826171875	2	506.258914	1010.50327	-0.67925	-0.00034388	4.1694	0.0021108	3.4901	0.0017669	506.760345198518	54.705	0.13424	54.705	54.623	54.757	0					5	3	2	0	0	0	0.024288	1	5995	5995		52.937	8.5595	1	77653	+		73474	23663	51411	51494	80430	80430					-0.0015572431609598425
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.325439453125	2	522.326599	1042.63865	-0.57374	-0.00029968	0.17822	9.3091E-05	-0.39551	-0.00020659	522.3265290402682	81.779	1.8799	81.805	81.25	83.129	0.025711					121	44	3	0	0	0	0.18994	1	10124	10124		90.601	13.283	1	956460			73475	10514	51412	51495	80431	80431					0.11903175545512568
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.3264770507812	2	522.326599	1042.63865	-0.14613	-7.6327E-05	-0.52674	-0.00027513	-0.67287	-0.00035146	522.3262304878017	80.824	1.437	80.586	80.246	81.683	-0.23784					84	34	4	0	0	0	0.11727	3	9701	9689;9701;9713		106.68	18.716	1	3791300			73476	10514	51412	51495	80432;80433;80434	80433					0.11903175545512568
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.3258666992188	2	522.326599	1042.63865	0.46829	0.0002446	-1.4287	-0.00074626	-0.96043	-0.00050166	522.3257465564712	80.814	1.6155	80.607	80.215	81.831	-0.20632					89	38	4	0	0	0	0.11727	3	9700	9700;9712;9727		106.68	20.973	1	3888600			73477	10514	51412	51495	80435;80436;80437	80435					0.11903175545512568
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.3257446289062	2	522.326599	1042.63865	-0.0098436	-5.1416E-06	-0.83624	-0.00043679	-0.84609	-0.00044193	522.326045431129	80.738	1.4956	80.592	80.241	81.737	-0.146					90	35	4	0	0	0	0.22379	3	9674	9674;9686;9699		85.862	18.368	1	3672700			73478	10514	51412	51495	80438;80439;80440	80438					0.11903175545512568
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.326599	1042.63865	-1.0338	-0.00053998	0.14516	7.5821E-05	-0.88864	-0.00046416	522.3265247952958	81.043	1.4117	80.913	80.449	81.86	-0.13075	0.16296	0.00061412	NaN	106.68	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2036500			73479	10514	51412	51495							0.11903175545512568
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.326599	1042.63865	-1.0159	-0.00053061	0.025472	1.3305E-05	-0.99039	-0.00051731	522.3264207928376	80.83	1.329	80.854	80.488	81.817	0.023911	0.10444	0.00048909	NaN	106.68	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1634500			73480	10514	51412	51495							0.11903175545512568
SLIVFLLMI	9	Unmodified	_SLIVFLLMI_					0	0	0			REV__nc|ENSG00000155886|Q9UI40-2|SLC24A2	REV__nc|ENSG00000155886|Q9UI40-2|SLC24A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.8271484375	2	524.827389	1047.64023	0.15236	7.9965E-05	-0.99221	-0.00052074	-0.83984	-0.00044077	524.8267476679999	97.913	2.4605	97.923	97.283	99.743	0.010231					170	56	6	0	0	0	0.97516	1	12516	12516		25.45	0	1	13084000	+		73481	25035	51413	51496	80441	80441					0.11831093309933749
SLIVGLLTY	9	Unmodified	_SLIVGLLTY_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant;ENST00000471238.5_1_7:75583310-75608939:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.81207275390625	2	489.797143	977.579734	-0.78818	-0.00038605	-0.66755	-0.00032696	-1.4557	-0.00071301	489.7970875569568	25.918	0.45134	25.755	25.414	25.865	-0.16331					15	10	2	0	0	0	0.024436	1	1207	1207		38.806	13.356	1	103840			73482	4269	51414	51497	80442	80442					0.09004699251170223
SLIVGLLTY	9	Unmodified	_SLIVGLLTY_					0	0	0		ENSG00000127948|ENST00000461988|POR;POR|p.R301Afs*18|1|0.24|ENSG00000127948|chr7:75983588-75983589|-/G|frameshift_variant;ENST00000471238.5_1_7:75583310-75608939:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.797143	977.579734	-0.12233	-5.9915E-05	-1.3917	-0.00068166	-1.514	-0.00074157	489.79633530415856	25.771	0.30759	25.6	25.499	25.807	-0.17078	-0.077454	-0.00016076	NaN	30.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116680			73483	4269	51414	51497							0.09004699251170223
SLKAITGEKL	10	Unmodified	_SLKAITGEKL_					0	0	0			REV__ENSG00000127529|ENST00000248072|OR7C2	REV__ENSG00000127529|ENST00000248072|OR7C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.3263549804688	2	530.324057	1058.63356	-0.08525	-4.521E-05	2.9191	0.0015481	2.8339	0.0015029	530.325505774577	106.84	0.3198	106.84	106.64	106.96	0.0018311					19	10	3	0	0	0	1.0997	1	13627	13627		32.751	1.2207	1	225500	+		73484	22937	51415	51498	80443	80443					0.10658871682880999
SLKDKLSK	8	Unmodified	_SLKDKLSK_					0	0	0		ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2242431640625	2	459.784567	917.554582	-0.6797	-0.00031251	-0.70198	-0.00032276	-1.3817	-0.00063527	459.7847165252495	26.685	0.3589	26.449	26.305	26.663	-0.23603					10	8	2	0	0	0	0.027866	1	1411	1411		21.96	1.013	1	66995			73485	10741	51416	51499	80444	80444					0.09250644448616185
SLKDRFGF	8	Unmodified	_SLKDRFGF_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A;ENST00000481328.7_1_11:76890894-76905079:+|nuORF	nc|ENSG00000137474|Q13402-8|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.26190185546875	2	485.261259	968.507966	0.60688	0.00029449	-0.67496	-0.00032753	-0.068083	-3.3038E-05	485.2608250425635	56.787	0.93991	56.562	56.269	57.209	-0.2248					53	24	3	0	0	0	0.87148	1	6153	6153		53.351	2.016	1	4795700			73486	18314	51417	51500	80445	80445					0.0224520461732709
SLKEKTKPL	9	Unmodified	_SLKEKTKPL_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7586059570312	2	522.326599	1042.63865	-0.092298	-4.821E-05	-1.5688	-0.00081942	-1.6611	-0.00086763	522.325857695576	41.378	0.50723	41.15	40.966	41.474	-0.2278					14	12	2	0	0	0	0.024418	1	3652	3652		30.318	10.958	1	69844			73487	1322	51418	51501	80446	80446					0.11903175545512568
SLKEKTSL	8	Unmodified	_SLKEKTSL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;ENST00000487754.2_1_6:56350034-56354383:-|nuORF	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.26861572265625	2	453.26875	904.522947	-0.40478	-0.00018348	0.10514	4.7656E-05	-0.29964	-0.00013582	453.26874970372995	25.723	0.94118	25.496	25.105	26.046	-0.22683					57	23	5	0	0	0	0.30694	1	1252	1252		110.12	8.5192	1	5795500			73488	6240	51419	51502	80447	80447					0.06686651694678858
SLKEKTSL	8	Unmodified	_SLKEKTSL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;ENST00000487754.2_1_6:56350034-56354383:-|nuORF	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	453.2688293457031	2	453.26875	904.522947	-0.20789	-9.4229E-05	-0.023279	-1.0552E-05	-0.23117	-0.00010478	453.2686672616233	25.48	0.95597	25.31	24.912	25.867	-0.17078					56	23	4	0	0	0	0.64735	1	1199	1199		71.877	4.3838	1	4749600			73489	6240	51419	51502	80448	80448					0.06686651694678858
SLKEKTSL	8	Unmodified	_SLKEKTSL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;ENST00000487754.2_1_6:56350034-56354383:-|nuORF	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.26849365234375	2	453.26875	904.522947	-0.16381	-7.4252E-05	-0.25917	-0.00011748	-0.42299	-0.00019173	453.26858276920603	25.553	0.99335	25.382	24.95	25.943	-0.17151					65	24	5	0	0	0	0.42912	1	1191	1191		93.195	5.499	1	5149600			73490	6240	51419	51502	80449	80449					0.06686651694678858
SLKEKVTLI	9	Unmodified	_SLKEKVTLI_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2719116210938	2	515.828975	1029.6434	-0.84636	-0.00043658	0.55454	0.00028605	-0.29183	-0.00015053	515.829073722978	49.015	0.72196	48.914	48.618	49.34	-0.1008					25	18	2	0	0	0	0.024319	1	4890	4890		47.657	5.2612	1	1118300	+		73491	20429	51420	51503	80450	80450					0.1297605968827611
SLKELKEF	8	Unmodified	_SLKELKEF_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-4|PATL1	REV__nc|ENSG00000166889|Q86TB9-4|PATL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2856750488281	2	497.2844	992.554247	-0.15683	-7.799E-05	0.45185	0.0002247	0.29502	0.00014671	497.28446860026753	35.728	0.90232	35.53	34.974	35.876	-0.19829					53	24	3	0	0	0	0.96769	1	2718	2718		42.396	0	1	2188100	+		73492	26075	51421	51504	80451	80451					0.05767224728765541
SLKELLSQ	8	Unmodified	_SLKELLSQ_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.22503662109375	2	459.26875	916.522947	-0.29555	-0.00013574	-0.90727	-0.00041668	-1.2028	-0.00055242	459.26795724178425	26.039	1.1504	25.869	25.699	26.85	-0.16941					68	30	4	0	0	0	0.027866	1	1348	1348		62.107	0	1	4494700	+		73493	23210	51422	51505	80452	80452					0.06134651694674176
SLKELLSQ	8	Unmodified	_SLKELLSQ_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	459.26875	916.522947	-0.23088	-0.00010604	-7.3977	-0.0033975	-7.6286	-0.0035036	459.26553313423113	26.054	0.30117	26.054	25.823	26.124	0	0.057351	-0.0056852	NaN	62.107	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30856	+		73494	23210	51422	51505							0.06134651694674176
SLKERNPL	8	Unmodified	_SLKERNPL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7798156738281	2	478.779816	955.545079	-0.76602	-0.00036676	0.4408	0.00021105	-0.32522	-0.00015571	478.77983425307247	30.442	0.80103	30.264	29.782	30.583	-0.17818					37	18	3	0	0	0	0.46709	1	1951	1951		88.643	0.88857	1	1073500			73495	351	51423	51506	80453	80453					0.0655287616308442
SLKERNPL	8	Unmodified	_SLKERNPL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.779816	955.545079	-0.031438	-1.5052E-05	-0.2476	-0.00011854	-0.27903	-0.0001336	478.7795269272086	30.537	0.76115	30.293	29.905	30.666	-0.24415	0.0010982	-0.00018079	NaN	88.643	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1140100			73496	351	51423	51506							0.0655287616308442
SLKERNPL	8	Unmodified	_SLKERNPL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;chr16:68695923-68698093|514|28.84|0.81|5.16|+|ENST00000429102|CDH3,CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.779816	955.545079	0.039502	1.8913E-05	-0.31003	-0.00014843	-0.27052	-0.00012952	478.779481235922	30.468	0.89175	30.318	29.835	30.727	-0.14952	0.026496	-0.00024058	NaN	88.643	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1030300			73497	351	51423	51506							0.0655287616308442
SLKETIEEL	9	Unmodified	_SLKETIEEL_					0	0	0		ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.2897338867188	2	531.289879	1060.56521	-0.80187	-0.00042602	1.5486	0.00082273	0.74669	0.00039671	531.2904492368275	51.36	0.50616	51.211	50.933	51.439	-0.14916					45	13	4	0	0	0	0.70156	1	5415	5415		45.972	3.4978	1	5790000			73498	7793	51424	51507	80454	80454					0.037345823123814625
SLKHSSKDI	9	Unmodified	_SLKHSSKDI_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7846374511719	2	507.782556	1013.55056	0.2616	0.00013284	3.546	0.0018006	3.8076	0.0019335	507.78429261693026	72.74	1.1878	72.749	72.331	73.519	0.0096512					69	29	4	0	0	0	0.32811	1	8763	8763		71.877	7.6702	1	4612600			73499	1051	51425	51508	80455	80455					0.04432554954905754
SLKILTSVD	9	Unmodified	_SLKILTSVD_					0	0	0			REV__ENST00000338548.4_1_X:107331957-107334750:-|nuORF	REV__ENST00000338548.4_1_X:107331957-107334750:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7901306152344	2	488.289682	974.564812	0.30743	0.00015011	3.427	0.0016734	3.7345	0.0018235	488.2913467455443	81.151	0.95844	80.957	80.76	81.718	-0.19334					39	22	2	0	0	0	0.02435	1	9774	9774		51.335	1.8939	1	321690	+		73500	30587	51426	51509	80456	80456					0.07651207383173642
SLKILTSVD	9	Unmodified	_SLKILTSVD_					0	0	0			REV__ENST00000338548.4_1_X:107331957-107334750:-|nuORF	REV__ENST00000338548.4_1_X:107331957-107334750:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	488.289682	974.564812	-0.13335	-6.5111E-05	3.702	0.0018076	3.5686	0.0017425	488.2913511444568	81.108	0.88026	80.965	80.776	81.656	-0.14249	0.0039136	0.00017155	NaN	51.335	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265390	+		73501	30587	51426	51509							0.07651207383173642
SLKIPEISI	9	Unmodified	_SLKIPEISI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000474358.5_1_X:153580213-153581146:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3076477050781	2	500.307875	998.601197	-0.09922	-4.9641E-05	0.11674	5.8407E-05	0.017521	8.7661E-06	500.30770676439846	72.951	1.421	72.951	72.017	73.438	0					85	35	4	0	0	0	0.053401	2	8878	8878;8891		127.46	14.05	1	1247500			73502	9935	51427	51510	80457;80458	80457					0.10184084279887884
SLKIPEISI	9	Unmodified	_SLKIPEISI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000474358.5_1_X:153580213-153581146:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3077697753906	2	500.307875	998.601197	0.083383	4.1717E-05	-0.15498	-7.7539E-05	-0.071599	-3.5822E-05	500.3076110616932	73.307	1.3886	73.036	72.149	73.538	-0.27126					96	34	4	0	0	0	0.10464	1	8889	8889		109.48	7.8776	1	1308300			73503	9935	51427	51510	80459	80459					0.10184084279887884
SLKIPEISI	9	Unmodified	_SLKIPEISI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant;FLNA|p.F2311Sfs*39|1|0.12|ENSG00000196924|chrX:154351672-154351673|-/ACTTGACTGAG|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000474358.5_1_X:153580213-153581146:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.30780029296875	2	500.307875	998.601197	0.26148	0.00013082	-0.34532	-0.00017277	-0.083839	-4.1946E-05	500.30753077987055	72.936	1.1119	72.945	72.29	73.402	0.0096512					85	27	4	0	0	0	0.079716	1	8807	8807		117.81	5.4001	1	1294100			73504	9935	51427	51510	80460	80460					0.10184084279887884
SLKKLKAEY	9	Unmodified	_SLKKLKAEY_					0	0	0			REV__ENSG00000127989|ENST00000351870|MTERF1	REV__ENSG00000127989|ENST00000351870|MTERF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.3269653320312	2	540.326599	1078.63865	-1.2358	-0.00066771	1.6128	0.00087146	0.37708	0.00020375	540.327358091049	48.808	0.86705	48.707	48.358	49.225	-0.1008					64	22	4	0	0	0	0.6504	1	4885	4885		49.442	0	1	3163900	+		73505	22957	51428	51511	80461	80461					0.1024717554550989
SLKKLLALL	9	Unmodified	_SLKKLLALL_					0	0	0			REV__ENSG00000182974|ENST00000332663|OR4M2B	REV__ENSG00000182974|ENST00000332663|OR4M2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2873229980469	2	499.852253	997.689953	-0.15047	-7.5211E-05	-0.2891	-0.00014451	-0.43957	-0.00021972	499.85181309075	55.605	0.79631	55.449	55.126	55.922	-0.15602					34	21	3	0	0	0	0.024397	1	6157	6157		39.253	5.0803	1	218500	+		73506	27522	51429	51512	80462	80462					0.19101544310228746
SLKKPKDL	8	Unmodified	_SLKKPKDL_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.8102722167969	2	464.794935	927.575317	-0.17697	-8.2254E-05	0.59261	0.00027544	0.41565	0.00019319	464.7949978028672	39.308	0.70905	39.332	39.099	39.808	0.023727					36	19	3	0	0	0	0.027866	1	3278	3278		34.173	14.176	1	537110	+		73507	22498	51430	51513	80463	80463					0.10863234828264012
SLKKPKDL	8	Unmodified	_SLKKPKDL_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.794935	927.575317	-0.34103	-0.00015851	0.54785	0.00025464	0.20682	9.6127E-05	464.7949782904143	39.136	0.48932	39.136	38.902	39.391	0	0.021683	0.00016783	NaN	34.173	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650780	+		73508	22498	51430	51513							0.10863234828264012
SLKKPKDL	8	Unmodified	_SLKKPKDL_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	464.794935	927.575317	-0.615	-0.00028585	0.75532	0.00035107	0.14032	6.5221E-05	464.7950497300793	39.173	0.46068	39.075	38.843	39.304	-0.098755	-0.0402	0.00036069	NaN	34.173	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522930	+		73509	22498	51430	51513							0.10863234828264012
SLKKPKDL	8	Unmodified	_SLKKPKDL_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.794935	927.575317	-0.73911	-0.00034354	0.3693	0.00017165	-0.36982	-0.00017189	464.79498512093284	39.165	0.39523	39.001	38.795	39.19	-0.16459	-0.11397	1.8505E-06	NaN	34.173	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175990	+		73510	22498	51430	51513							0.10863234828264012
SLKKPKDL	8	Unmodified	_SLKKPKDL_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.794935	927.575317	-0.51866	-0.00024107	-0.16895	-7.8529E-05	-0.68762	-0.0003196	464.7946980297959	39.302	0.36797	39.079	38.857	39.225	-0.22311	-0.035566	-0.0004985	NaN	34.173	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184520	+		73511	22498	51430	51513							0.10863234828264012
SLKKPKDL	8	Unmodified	_SLKKPKDL_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.794935	927.575317	-0.13659	-6.3485E-05	-0.19796	-9.201E-05	-0.33455	-0.0001555	464.79474886356815	39.291	0.3676	39.066	38.874	39.242	-0.2257	-0.049073	-0.00052547	NaN	34.173	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144570	+		73512	22498	51430	51513							0.10863234828264012
SLKKSETNKKQ	11	Unmodified	_SLKKSETNKKQ_					0	0	0			REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	REV__nc|ENSG00000094975|Q9UBS9-2|SUCO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.2659912109375	3	430.917381	1289.73031	-0.38479	-0.00016581	-3.128	-0.0013479	-3.5128	-0.0015137	431.2509904880887	20.015	0.96156	20.015	19.6	20.562	0					30	19	2	0	0	0	0.02477	1	546	546		28.577	6.7963	1	35451	+		73513	36508	51431	51514	80464	80464					0.09703814172030434
SLKKTIIEL	9	Unmodified	_SLKKTIIEL_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3041381835938	2	522.8368	1043.65905	-0.57313	-0.00029965	-1.3467	-0.00070409	-1.9198	-0.0010037	522.8360522000224	84.427	1.4715	84.454	83.814	85.286	0.026558					57	34	2	0	0	0	0.024511	1	10555	10555		19.104	8.238	1	262340			73514	10659	51432	51515	80465	80465					0.13896346205319787
SLKKVHTAL	9	Unmodified	_SLKKVHTAL_					0	0	0			REV__ENSG00000164674|ENST00000611299|SYTL3	REV__ENSG00000164674|ENST00000611299|SYTL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.76611328125	2	498.813659	995.612765	-0.40095	-0.0002	-0.8126	-0.00040534	-1.2136	-0.00060534	498.8130734494452	41.842	0.48354	41.611	41.313	41.797	-0.2303					24	12	4	0	0	0	0.024477	1	3694	3694		35.618	10.044	1	243190	+		73515	25789	51433	51516	80466	80466					0.114783260938907
SLKLDRQL	8	Unmodified	_SLKLDRQL_					0	0	0			REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.7947998046875	2	486.795466	971.57638	0.45211	0.00022008	-0.66412	-0.00032329	-0.21202	-0.00010321	486.79500285340094	18.819	0.69191	18.615	18.361	19.053	-0.20371					37	13	4	0	0	0	0.95679	1	365	365		44.117	1.7207	1	471590	+		73516	23718	51434	51517	80467	80467					0.08945449197187827
SLKLEDVAL	9	Unmodified	_SLKLEDVAL_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.28955078125	2	494.289682	986.564812	-0.21641	-0.00010697	0.34239	0.00016924	0.12598	6.227E-05	494.289757917141	61.712	1.0761	61.455	61.175	62.251	-0.25725					80	26	4	0	0	0	0.84115	1	6896	6896		36.447	0.82846	1	1837700			73517	7447	51435	51518	80468	80468					0.07099207383191697
SLKLKRVHWA	10	Unmodified	_SLKLKRVHWA_					0	0	0			REV__ENST00000605573.1_1_3:187871072-187871573:-|nuORF	REV__ENST00000605573.1_1_3:187871072-187871573:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2691650390625	3	413.25578	1236.74551	-0.63807	-0.00026369	0.93569	0.00038668	0.29762	0.00012299	413.2563260598988	28.427	1.1994	28.258	27.528	28.727	-0.16897					52	28	4	0	0	0	0.03519	1	1653	1653		45.022	11.983	1	208430	+		73518	35919	51436	51519	80469	80469					0.136607705505412
SLKLKRVHWA	10	Unmodified	_SLKLKRVHWA_					0	0	0			REV__ENST00000605573.1_1_3:187871072-187871573:-|nuORF	REV__ENST00000605573.1_1_3:187871072-187871573:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2691650390625	3	413.25578	1236.74551	-0.32668	-0.000135	1.1924	0.00049276	0.86571	0.00035776	413.25652463685395	28.468	0.6937	28.316	27.961	28.655	-0.15195					33	16	3	0	0	0	0.03519	1	1655	1655		51.528	3.5682	1	178580	+		73519	35919	51436	51519	80470	80470					0.136607705505412
SLKLLHLH	8	Unmodified	_SLKLLHLH_					0	0	0		ENST00000296754.7_2_5:96098754-96098832:-|nuORF	ENST00000296754.7_2_5:96098754-96098832:-|nuORF	ENST00000296754.7_2_5:96098754-96098832:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.28125	2	480.803094	959.591636	-0.016503	-7.9346E-06	-4.409	-0.0021199	-4.4255	-0.0021278	480.800922998224	96.313	1.1156	96.156	95.751	96.867	-0.15646					44	25	2	0	0	0	0.027866	1	11863	11863		77.944	0	1	84693			73520	11851	51437	51520	80471	80471					0.1102236078503438
SLKNRLQNT	9	Unmodified	_SLKNRLQNT_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7814331054688	2	537.306729	1072.59891	-1.4427	-0.00077519	-3.2919	-0.0017688	-4.7347	-0.002544	537.3048057365077	60.851	0.59697	60.597	60.294	60.891	-0.25373					27	14	3	0	0	0	0.024344	1	6812	6812		37.812	4.9991	1	419160	+		73521	26467	51438	51521	80472	80472					0.06551048594792519
SLKNRLQNT	9	Unmodified	_SLKNRLQNT_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.306729	1072.59891	-1.3223	-0.0007105	-3.0717	-0.0016505	-4.3941	-0.002361	537.3048496265368	60.589	0.92381	60.589	60.256	61.18	0	0.011403	3.4317E-05	NaN	30.318	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3025800	+		73522	26467	51438	51521							0.06551048594792519
SLKNRLQNT	9	Unmodified	_SLKNRLQNT_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.306729	1072.59891	-1.1082	-0.00059545	-3.521	-0.0018918	-4.6292	-0.0024873	537.3047674686221	60.838	0.85765	60.625	60.273	61.131	-0.21339	0.046732	-0.00044845	NaN	30.318	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3358300	+		73523	26467	51438	51521							0.06551048594792519
SLKNRLQNT	9	Unmodified	_SLKNRLQNT_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.306729	1072.59891	-2.3511	-0.0012633	-2.2267	-0.0011964	-4.5778	-0.0024597	537.3054184271159	60.45	0.93254	60.529	60.242	61.175	0.078888	-0.049344	0.00094243	NaN	30.318	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2782100	+		73524	26467	51438	51521							0.06551048594792519
SLKNRLQNT	9	Unmodified	_SLKNRLQNT_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.306729	1072.59891	-0.55594	-0.00029871	-4.8139	-0.0025866	-5.3699	-0.0028853	537.3038837976519	60.819	0.51834	60.613	60.254	60.772	-0.20599	0.034895	-0.0018379	NaN	30.318	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260380	+		73525	26467	51438	51521							0.06551048594792519
SLKPPPVSSHS	11	Unmodified	_SLKPPPVSSHS_					0	0	0			REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	REV__ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3301391601562	2	568.308938	1134.60332	0.08397	4.7721E-05	3.6079	0.0020504	3.6919	0.0020981	568.3107880980748	92.778	0.88916	92.634	92.288	93.177	-0.14388					56	20	4	0	0	0	0.024774	1	11404	11404		31.634	14.917	1	725780	+		73526	34888	51439	51522	80473	80473					0.04140513017705416
SLKRLSVY	8	Unmodified	_SLKRLSVY_					0	0	0		ENSG00000179152|ENST00000342649|TCAIM;nc|ENSG00000179152|Q8N3R3-2|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2742004394531	2	483.292559	964.570566	-1.0896	-0.00052662	1.2261	0.00059256	0.13645	6.5946E-05	483.29251767996294	30.401	0.37187	30.401	30.137	30.508	0					11	8	3	0	0	0	0.027866	1	1961	1961		25.45	13.243	1	48678			73527	8878	51440	51523	80474	80474					0.08686350685513844
SLKRNINL	8	Unmodified	_SLKRNINL_					0	0	0			REV__ENSG00000173409|ENST00000310256|ARV1	REV__ENSG00000173409|ENST00000310256|ARV1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.297607421875	2	479.295633	956.576714	0.10979	5.2623E-05	3.3831	0.0016215	3.4929	0.0016741	479.29710099406265	49.471	0.80908	49.32	48.972	49.781	-0.1512					64	21	4	0	0	0	0.44658	1	5116	5116		90.777	11.326	1	2344100	+		73528	26772	51441	51524	80475	80475					0.09668868917015061
SLKSGLIRA	9	Unmodified	_SLKSGLIRA_					0	0	0			REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7741394042969	2	472.798009	943.581465	-0.46084	-0.00021789	-0.09386	-4.4377E-05	-0.5547	-0.00026226	472.79775183978705	37.061	0.47125	36.842	36.528	36.999	-0.2195					26	11	3	0	0	0	0.024397	1	2963	2963		47.657	25.697	1	331980	+		73529	19990	51442	51525	80476	80476					0.10741753059789971
SLKSSLVPL	9	Unmodified	_SLKSSLVPL_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2950439453125	2	472.294768	942.574983	-0.3593	-0.00016969	0.99745	0.00047109	0.63815	0.0003014	472.29505103056874	40.561	1.3397	40.412	39.783	41.123	-0.1497					75	35	4	0	0	0	0.14024	1	3516	3516		101.6	5.4103	1	5294900	+		73530	20095	51443	51526	80477	80477					0.10139815108414041
SLKSSLVPL	9	Unmodified	_SLKSSLVPL_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.29473876953125	2	472.294768	942.574983	-0.075998	-3.5893E-05	0.69201	0.00032683	0.61601	0.00029094	472.29489678216316	40.73	1.2341	40.505	40.004	41.239	-0.225					74	32	4	0	0	0	0.14024	1	3565	3565		101.6	8.4052	1	4983700	+		73531	20095	51443	51526	80478	80478					0.10139815108414041
SLKSSLVPL	9	Unmodified	_SLKSSLVPL_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2955627441406	2	472.294768	942.574983	-1.495	-0.00070606	2.1246	0.0010034	0.62961	0.00029736	472.2956231690084	40.742	1.2276	40.512	40.046	41.274	-0.23029					76	32	4	0	0	0	0.091713	1	3528	3528		113.41	8.665	1	4729100	+		73532	20095	51443	51526	80479	80479					0.10139815108414041
SLKTKTSLN	9	Unmodified	_SLKTKTSLN_					0	0	0		ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7811279296875	2	496.292756	990.57096	-0.61851	-0.00030696	-0.4434	-0.00022006	-1.0619	-0.00052702	496.2922325624265	28.574	0.58498	28.574	28.362	28.947	0					31	13	3	0	0	0	0.024495	1	1646	1646		19.997	4.355	1	100650			73533	15106	51444	51527	80480	80480					0.075297256146996
SLKTKTSLN	9	Unmodified	_SLKTKTSLN_					0	0	0		ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	ENST00000477171.1_1_3:152017595-152017766:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.292756	990.57096	-0.063485	-3.1507E-05	-1.0042	-0.00049838	-1.0677	-0.00052989	496.2919872719141	28.327	0.57458	28.408	28.167	28.742	0.080812	-0.083387	-0.0003094	NaN	19.997	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105690			73534	15106	51444	51527							0.075297256146996
SLKTLRKSFN	10	Unmodified	_SLKTLRKSFN_					0	0	0		SOCS6|p.N66Kfs*49|1|0.15|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant;ENSG00000170677|ENST00000397942|SOCS6	SOCS6|p.N66Kfs*49|1|0.15|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	SOCS6|p.N66Kfs*49|1|0.15|ENSG00000170677|chr18:70324859-70324860|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.857177734375	2	597.35368	1192.69281	-0.68039	-0.00040643	2.0382	0.0012175	1.3578	0.00081107	597.3540221839667	103.66	1.264	103.66	103.14	104.4	0.0031357					78	31	5	0	0	0	1.118	1	13247	13247		30.318	0	1	534480			73535	8067	51445	51528	80481	80481					0.10416767697097384
SLKTSMSGY	9	Unmodified	_SLKTSMSGY_					0	0	0		THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant;ENSG00000126351|ENST00000450525|THRA;nc|ENSG00000126351|P10827-4|THRA;nc|ENSG00000126351|P10827-3|THRA;nc|ENSG00000126351|P10827|THRA	THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant	THRA|p.R176Qfs*17|1|0.09|ENSG00000126351|chr17:40084762-40084769|CATCGCAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2352600097656	2	487.236593	972.458632	0.33764	0.00016451	-4.2986	-0.0020945	-3.961	-0.0019299	487.23437712111917	48.223	0.94812	48.036	47.749	48.698	-0.18684					66	25	4	0	0	0	0.42604	1	4744	4744		64.207	6.396	1	6231800			73536	4195	51446	51529	80482	80482					-0.028698714537881642
SLKVRVIL	8	Unmodified	_SLKVRVIL_					0	0	0			REV__CHD5|p.E951K|1|0.12|ENSG00000116254|chr1:6135249-6135249|C/T|missense_variant	REV__CHD5|p.E951K|1|0.12|ENSG00000116254|chr1:6135249-6135249|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.7569274902344	2	464.32112	926.627687	0.58793	0.00027299	-0.55274	-0.00025665	0.035194	1.6341E-05	464.3205183590611	20.852	0.29499	20.656	20.484	20.779	-0.19577					7	5	2	0	0	0	0.027866	1	581	581		19.36	0	1	15529	+		73537	19306	51447	51530	80483	80483					0.16143817961904006
SLKYKDSLT	9	Unmodified	_SLKYKDSLT_					0	0	0			REV__ENSG00000175928|ENST00000319331|LRRN1	REV__ENSG00000175928|ENST00000319331|LRRN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3053588867188	2	527.792589	1053.57063	-0.71093	-0.00037522	0.32051	0.00016916	-0.39042	-0.00020606	528.2935869611814	97.693	0.89825	97.693	97.46	98.358	0					28	20	2	0	0	0	0.024447	1	12502	12502		25.574	0	1	99056	+		73538	26983	51448	51531	80484	80484					0.045983058948422695
SLKYSLLAN	9	Unmodified	_SLKYSLLAN_					0	0	0			REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7601318359375	2	504.78985	1007.56515	0.31089	0.00015694	0.011354	5.7313E-06	0.32225	0.00016267	504.7897873587043	60.065	0.55298	60.065	59.813	60.366	0					33	14	4	0	0	0	0.024288	1	6875	6875		29.17	4.6509	1	516350	+		73539	37085	51449	51532	80485	80485					0.06166627103038991
SLLAAALLYG	10	Unmodified	_SLLAAALLYG_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.76885986328125	2	496.294768	990.574983	-0.12685	-6.2957E-05	0.94965	0.00047131	0.8228	0.00040835	496.29528560170746	81.03	0.55963	81.03	80.822	81.382	0					30	13	3	0	0	0	0.03519	1	10130	10130		31.955	1.6371	1	305080			73540	9960	51450	51533	80486	80486					0.0793181510841805
SLLAGLAAALL	11	Unmodified	_SLLAGLAAALL_					0	0	0			REV__ENSG00000204278|ENST00000421688|TMEM235	REV__ENSG00000204278|ENST00000421688|TMEM235	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.27764892578125	2	506.823692	1011.63283	0.12512	6.3414E-05	-0.43744	-0.0002217	-0.31232	-0.00015829	506.8233119894222	57.268	0.62579	57.104	56.845	57.471	-0.16431					22	16	2	0	0	0	0.024017	1	6416	6416		54.776	0	1	217240	+		73541	28584	51451	51534	80487	80487					0.1274807703384795
SLLAKSEV	8	Unmodified	_SLLAKSEV_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|70|3|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|70|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.2585144042969	2	423.750193	845.485833	-0.60003	-0.00025426	3.1247	0.0013241	2.5247	0.0010698	423.7513400307417	27.136	1.3806	27.136	26.163	27.544	0					58	34	3	0	0	0	0.027866	1	1449	1449		23.042	0	1	1114100	+		73542	36259	51452	51535	80488	80488					0.056909801489041456
SLLAKSGLI	9	Unmodified	_SLLAKSGLI_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense;REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|152|3|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|150|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2642517089844	2	451.289485	900.564418	0.15824	7.1412E-05	-0.030341	-1.3692E-05	0.1279	5.772E-05	451.28929281172043	32.907	0.76104	32.715	32.417	33.178	-0.19261					36	18	3	0	0	0	0.024	1	2337	2337		37.159	0	1	952020	+		73543	36233;36240	51453	51536	80489	80489					0.11015832453995245
SLLAQVPK	8	Unmodified	_SLLAQVPK_					0	0	0			REV__ENST00000528369.5_1_11:17809634-17961065:-|nuORF	REV__ENST00000528369.5_1_11:17809634-17961065:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2253112792969	2	428.268553	854.522553	-0.89776	-0.00038448	1.846	0.00079059	0.94824	0.0004061	428.2690816331101	25.303	0.60571	25.303	25.173	25.779	0					18	14	2	0	0	0	0.027866	1	1254	1254		35.618	2.8059	1	52105	+		73544	23033	51454	51537	80490	80490					0.0894727676546836
SLLAQVPK	8	Unmodified	_SLLAQVPK_					0	0	0			REV__ENST00000528369.5_1_11:17809634-17961065:-|nuORF	REV__ENST00000528369.5_1_11:17809634-17961065:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	428.268553	854.522553	0.52846	0.00022632	0.73485	0.00031471	1.2633	0.00054103	428.268884871437	25.298	0.40608	25.378	25.134	25.54	0.08009	0.037401	-0.00047472	NaN	35.618	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65462	+		73545	23033	51454	51537							0.0894727676546836
SLLARGRE	8	Unmodified	_SLLARGRE_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.26434326171875	2	451.264333	900.514114	-0.053259	-2.4034E-05	-0.24006	-0.00010833	-0.29332	-0.00013237	451.26416793174377	33.116	0.67712	32.916	32.609	33.286	-0.20019					49	16	4	0	0	0	0.97924	1	2325	2325		40.573	1.7665	1	5445200	+		73546	27888	51455	51538	80491	80491					0.059877228488517176
SLLASCCLLW	10	Unmodified	_SLLASCCLLW_					0	0	0			REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF	REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7785034179688	2	554.780113	1107.54567	-0.11722	-6.5034E-05	-3.3889	-0.0018801	-3.5061	-0.0019451	554.7781755210269	58.456	0.929	58.273	58.054	58.983	-0.18335					38	22	3	0	0	0	1.0271	1	6429	6429		42.396	0	1	1738000	+		73547	26979	51456	51539	80492	80492					-0.0037978850373292516
SLLASLHTL	9	Unmodified	_SLLASLHTL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7845458984375	2	477.784567	953.554582	0.42557	0.00020333	-1.4244	-0.00068056	-0.99883	-0.00047723	477.7837924631931	67.088	0.92073	67.088	66.798	67.719	0					63	22	4	0	0	0	0.16468	2	8000	8000;8011		96.19	27.404	1	1814100			73548	5494	51457	51540	80493;80494	80493					0.07594644448602139
SLLASLHTL	9	Unmodified	_SLLASLHTL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7843322753906	2	477.784567	953.554582	0.15594	7.4506E-05	-1.1863	-0.0005668	-1.0304	-0.00049229	477.78380704576483	67.457	0.88028	67.169	66.791	67.671	-0.28834					47	21	3	0	0	0	0.20967	1	8029	8029		87.754	26.782	1	2108800			73549	5494	51457	51540	80495	80495					0.07594644448602139
SLLASLHTL	9	Unmodified	_SLLASLHTL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7846374511719	2	477.784567	953.554582	0.12383	5.9162E-05	-0.9475	-0.0004527	-0.82367	-0.00039354	477.7840000853205	67.228	0.9118	67.252	66.985	67.897	0.023911					53	22	4	0	0	0	0.20967	1	7941	7941		87.754	18.127	1	2008200			73550	5494	51457	51540	80496	80496					0.07594644448602139
SLLASLHTL	9	Unmodified	_SLLASLHTL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.784567	953.554582	0.82185	0.00039267	-0.23146	-0.00011059	0.59039	0.00028208	477.7841192666518	67.388	0.58639	67.132	66.952	67.538	-0.25516	-0.021613	-4.4092E-05	NaN	96.19	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462530			73551	5494	51457	51540							0.07594644448602139
SLLASLHTL	9	Unmodified	_SLLASLHTL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.784567	953.554582	-0.30427	-0.00014537	0.4916	0.00023488	0.18733	8.9503E-05	477.78463893435975	67.35	0.66548	67.126	66.898	67.564	-0.2244	-0.028309	0.00064684	NaN	96.19	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382700			73552	5494	51457	51540							0.07594644448602139
SLLASLHTL	9	Unmodified	_SLLASLHTL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.784567	953.554582	-0.32301	-0.00015433	0.40591	0.00019394	0.082904	3.961E-05	477.78471350047244	67.396	0.45949	67.158	66.919	67.378	-0.23814	0.0035973	0.00056496	NaN	96.19	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258400			73553	5494	51457	51540							0.07594644448602139
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.28668212890625	2	465.286943	928.559333	-1.2711	-0.00059142	0.69987	0.00032564	-0.57122	-0.00026578	465.2873997239226	75.288	1.964	75.288	74.835	76.799	0					162	50	5	0	0	0	0.27536	1	9250	9250		111.65	4.6408	1	98323000			73554	5907	51458	51541	80497	80497					0.09219528591370363
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.28692626953125	2	465.286943	928.559333	-0.12485	-5.809E-05	-1.0831	-0.00050394	-1.2079	-0.00056203	465.2868143855361	75.593	2.1848	75.32	74.807	76.992	-0.27266					169	53	6	0	0	0	0.42446	2	8953	8953;9034		96.19	1.3758	1	104440000			73555	5907	51458	51541	80498;80499	80498					0.09219528591370363
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.287841796875	2	465.286943	928.559333	-0.23241	-0.00010814	-1.0854	-0.00050504	-1.3178	-0.00061317	465.2868513981878	75.517	2.1571	75.259	74.779	76.936	-0.25865					181	52	6	0	0	0	0.62431	1	9063	9063		74.255	1.3758	1	126510000			73556	5907	51458	51541	80500	80500					0.09219528591370363
SLLAWSHPS	9	Unmodified	_SLLAWSHPS_					0	0	0			REV__ENST00000520970.5_1_8:22058712-22069238:+|nuORF	REV__ENST00000520970.5_1_8:22058712-22069238:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77178955078125	2	499.258717	996.50288	-0.69231	-0.00034564	-0.20541	-0.00010255	-0.89772	-0.00044819	499.25864172099796	31.44	0.22426	31.287	31.232	31.456	-0.15231					7	5	2	0	0	0	0.024506	1	2086	2086		10.866	0	1	86030	+		73557	34307	51459	51542	80501	80501					0.0044890075471357704
SLLCLRLSP	9	Unmodified	_SLLCLRLSP_					0	0	0		ENST00000489337.5_1_22:31493067-31493205:+|nuORF	ENST00000489337.5_1_22:31493067-31493205:+|nuORF	ENST00000489337.5_1_22:31493067-31493205:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3127136230469	2	501.294245	1000.57394	0.79963	0.00040085	-0.32746	-0.00016416	0.47217	0.0002367	501.29429325347746	78.242	0.45239	78.05	77.764	78.216	-0.1921					19	10	2	0	0	0	0.024447	1	9613	9613		25.574	0	1	196750			73558	15404	51460	51543	80502	80502					0.07367277467858457
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.74542236328125	2	485.745639	969.476725	-1.1283	-0.00054808	0.42632	0.00020708	-0.702	-0.000341	485.74566660952166	62.04	0.53055	62.04	61.72	62.25	0					37	14	4	0	0	0	0.091713	2	7211	7211;7223		113.41	28.052	1	3824900			73559	6931	51461	51544	80503;80504	80503					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.7458801269531	2	485.745639	969.476725	-0.68604	-0.00033324	-0.12784	-6.21E-05	-0.81388	-0.00039534	485.74543546922854	62.26	0.45331	62.033	61.766	62.219	-0.22663					35	12	4	0	0	0	0.082191	2	7208	7208;7218		116.9	22.897	1	5401000			73560	6931	51461	51544	80505;80506	80505					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7450256347656	2	485.745639	969.476725	-1.2979	-0.00063044	0.17439	8.471E-05	-1.1235	-0.00054573	485.7454795824899	61.99	0.7301	62.053	61.542	62.272	0.062767					43	19	4	0	0	0	0.057894	1	7115	7115		125.81	35.037	1	3871400			73561	6931	51461	51544	80507	80507					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.7457580566406	2	485.745639	969.476725	-0.22376	-0.00010869	-0.21471	-0.00010429	-0.43847	-0.00021298	485.7454780414543	62.324	0.69836	62.11	61.584	62.283	-0.21375					54	17	4	0	0	0	0.23085	2	7003	7003;7014		84.916	10.941	1	5445200			73562	6931	51461	51544	80508;80509	80508					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7461853027344	2	485.745639	969.476725	-0.83781	-0.00040696	0.55227	0.00026826	-0.28554	-0.0001387	485.7459014219184	62.233	0.80754	62.055	61.576	62.383	-0.17781					64	20	4	0	0	0	0.42604	1	7007	7007		64.207	0.901	1	5867300			73563	6931	51461	51544	80510	80510					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.7455749511719	2	485.745639	969.476725	-0.11452	-5.5629E-05	-0.33954	-0.00016493	-0.45407	-0.00022056	485.74544824671005	62.408	0.59152	62.15	61.82	62.411	-0.25824					35	14	3	0	0	0	0.17822	2	7014	7002;7014		93.195	5.499	1	5404000			73564	6931	51461	51544	80511;80512	80512					-0.009234132074311674
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.3021240234375	2	564.30279	1126.59103	-0.054027	-3.0488E-05	-0.11851	-6.6876E-05	-0.17254	-9.7363E-05	564.3025492484428	86.957	1.3753	86.957	86.43	87.805	0					100	32	5	0	0	0	0.013887	8	10889	10889;10900;10912;10924;10935;10948;10959;10974		180.93	51.505	1	3771700			73565	4888	51462	51545	80513;80514;80515;80516;80517;80518;80519;80520	80513					0.032794765546668714
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.3026123046875	2	564.30279	1126.59103	-0.11927	-6.7305E-05	-0.10069	-5.6822E-05	-0.21997	-0.00012413	564.3025796124664	86.929	1.3898	86.893	86.303	87.693	-0.035355					107	32	5	0	0	0	0.016758	8	10863	10843;10852;10863;10875;10887;10899;10913;10926		153.04	49.37	1	4022700			73566	4888	51462	51545	80521;80522;80523;80524;80525;80526;80527;80528	80523					0.032794765546668714
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.3025512695312	2	564.30279	1126.59103	-0.34016	-0.00019195	0.17072	9.6336E-05	-0.16944	-9.5614E-05	564.3027125054041	86.903	1.5431	86.924	86.33	87.873	0.021263					108	36	5	0	0	0	0.014034	7	10841	10805;10817;10829;10841;10852;10866;10878		166.68	45.81	1	3881100			73567	4888	51462	51545	80529;80530;80531;80532;80533;80534;80535	80532					0.032794765546668714
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.302978515625	2	564.30279	1126.59103	0.019843	1.1197E-05	-0.14741	-8.3183E-05	-0.12757	-7.1986E-05	564.3024843903885	86.701	1.4905	86.514	86.035	87.526	-0.18695					78	34	4	0	0	0	0.03201	4	10520	10509;10520;10533;10547		139.97	49.37	1	2204400			73568	4888	51462	51545	80536;80537;80538;80539	80537					0.032794765546668714
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.3026123046875	2	564.30279	1126.59103	0.64886	0.00036615	-0.96752	-0.00054598	-0.31866	-0.00017982	564.3021175084845	86.567	1.1928	86.425	86.147	87.34	-0.14217					62	27	3	0	0	0	0.015752	4	10517	10507;10517;10529;10543		158.07	47.007	1	2325000			73569	4888	51462	51545	80540;80541;80542;80543	80541					0.032794765546668714
SLLDEFYKL	9	Unmodified	_SLLDEFYKL_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.3026733398438	2	564.30279	1126.59103	0.021702	1.2247E-05	-0.2389	-0.00013481	-0.2172	-0.00012256	564.3024449610682	86.627	1.3657	86.49	86.136	87.502	-0.13734					77	31	4	0	0	0	0.014034	3	10518	10496;10506;10518		166.68	54.268	1	2330300			73570	4888	51462	51545	80544;80545;80546	80546					0.032794765546668714
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.28204345703125	2	501.279315	1000.54408	-0.12932	-6.4823E-05	0.16488	8.2653E-05	0.035568	1.7829E-05	501.2792315225443	97.095	0.71165	97.095	96.748	97.46	0					34	15	3	0	0	0	0.16638	1	12383	12383		95.815	16.103	1	431600			73571	7046	51463	51546	80547	80547					0.04382617003534506
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.28277587890625	2	501.279315	1000.54408	0.48503	0.00024314	-0.49643	-0.00024885	-0.011403	-5.7163E-06	501.27888048581764	97.024	0.75339	97.033	96.707	97.46	0.0089111					36	16	3	0	0	0	0.03201	2	12347	12335;12347		139.97	60.519	1	459600			73572	7046	51463	51546	80548;80549	80549					0.04382617003534506
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2820739746094	2	501.279315	1000.54408	1.0266	0.00051463	-1.0599	-0.00053131	-0.033288	-1.6687E-05	501.2786927320065	97.114	0.75417	97.114	96.749	97.503	-3.0518E-05					33	16	3	0	0	0	0.17845	1	12314	12314		93.143	28.936	1	428340			73573	7046	51463	51546	80550	80550					0.04382617003534506
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.28057861328125	2	501.279315	1000.54408	0.89579	0.00044904	-0.99699	-0.00049977	-0.1012	-5.0731E-05	501.2787156236464	97.083	0.99261	96.947	96.657	97.65	-0.1367					34	21	2	0	0	0	0.086035	1	12005	12005		115.49	19.679	1	643040			73574	7046	51463	51546	80551	80551					0.04382617003534506
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2804870605469	2	501.279315	1000.54408	0.89783	0.00045006	-0.82337	-0.00041274	0.074464	3.7327E-05	501.27872168040716	97.042	0.80164	96.919	96.661	97.463	-0.12368					40	17	3	0	0	0	0.077175	1	12024	12024		118.74	33.828	1	444910			73575	7046	51463	51546	80552	80552					0.04382617003534506
SLLDEVLNV	9	Unmodified	_SLLDEVLNV_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2808532714844	2	501.279315	1000.54408	-0.50086	-0.00025107	0.60305	0.0003023	0.10219	5.1225E-05	501.27943852153356	97.124	0.62632	96.963	96.684	97.31	-0.16106					35	13	4	0	0	0	0.1158	1	12004	12004		107.01	22.092	1	446540			73576	7046	51463	51546	80553	80553					0.04382617003534506
SLLDGHFVL	9	Unmodified	_SLLDGHFVL_					0	0	0		ENST00000535644.1_1_11:67163166-67165027:+|nuORF;ENST00000538013.5_1_11:67160139-67164890:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.776611328125	2	500.776742	999.538931	-1.1872	-0.00059451	1.5073	0.00075483	0.32013	0.00016031	500.77728297618677	79.803	0.92133	79.631	79.275	80.197	-0.17226					48	21	3	0	0	0	0.33245	1	9870	9870		71.296	10.324	1	1160000			73577	8293	51464	51547	80554	80554					0.03914357931569157
SLLDGVVEKL	10	Unmodified	_SLLDGVVEKL_					0	0	0		ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA	ENST00000503693.1_1_4:1283701-1322488:+|nuORF	ENST00000503693.1_1_4:1283701-1322488:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.815673828125	2	536.816064	1071.61758	-0.31577	-0.00016951	4.2923	0.0023042	3.9765	0.0021346	536.8161007737532	76.695	0.53224	76.695	76.35	76.882	0					31	12	4	0	0	0	0.069016	1	9468	9468		143.37	22.505	1	1340100			73578	1926	51465	51548	80555	80555					0.08463165446005405
SLLDGVVEKL	10	Unmodified	_SLLDGVVEKL_					0	0	0		ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA	ENST00000503693.1_1_4:1283701-1322488:+|nuORF	ENST00000503693.1_1_4:1283701-1322488:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.8152465820312	2	536.816064	1071.61758	-0.88282	-0.00047391	1.587	0.00085192	0.70416	0.000378	536.816318517741	76.879	0.65712	76.65	76.279	76.936	-0.22843					21	15	2	0	0	0	0.18296	2	9463	9450;9463		123.21	21.492	1	1494900			73579	1926	51465	51548	80556;80557	80557					0.08463165446005405
SLLDGVVEKL	10	Unmodified	_SLLDGVVEKL_					0	0	0		ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA;nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA	ENST00000503693.1_1_4:1283701-1322488:+|nuORF	ENST00000503693.1_1_4:1283701-1322488:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.81494140625	2	536.816064	1071.61758	-0.40526	-0.00021755	1.9689	0.0010569	1.5637	0.0008394	536.8159901616174	76.687	0.53159	76.699	76.406	76.938	0.012764					18	12	2	0	0	0	0.18296	2	9399	9381;9399		123.21	13.73	1	1290200			73580	1926	51465	51548	80558;80559	80559					0.08463165446005405
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.3128051757812	2	515.313158	1028.61176	0.099005	5.1019E-05	-0.85087	-0.00043846	-0.75187	-0.00038745	515.3125730641897	88.191	1.8941	88.191	87.922	89.816	0					140	44	5	0	0	0	0.01388	9	11108	11097;11108;11120;11132;11144;11156;11168;11181;11195		180.87	69.221	1	9543000			73581	2480;18139	51466	51549	80560;80561;80562;80563;80564;80565;80566;80567;80568	80561					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3131103515625	2	515.313158	1028.61176	0.51798	0.00026692	-1.2515	-0.00064492	-0.73353	-0.000378	515.3123459390599	88.14	1.8836	88.112	87.814	89.698	-0.027657					127	44	5	0	0	0	0.01388	9	11115	11055;11067;11079;11091;11103;11115;11127;11140;11154		209.84	75.029	1	8234100			73582	2480;18139	51466	51549	80569;80570;80571;80572;80573;80574;80575;80576;80577	80574					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3126220703125	2	515.313158	1028.61176	0.11877	6.1202E-05	-0.70409	-0.00036283	-0.58532	-0.00030162	515.3126528055348	88.283	1.813	88.302	87.948	89.761	0.018555					127	42	5	0	0	0	0.01388	9	11056	11022;11032;11044;11056;11068;11080;11092;11104;11118		195.06	78.16	1	8793000			73583	2480;18139	51466	51549	80578;80579;80580;80581;80582;80583;80584;80585;80586	80581					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3135375976562	2	515.313158	1028.61176	-0.41158	-0.00021209	0.29428	0.00015165	-0.11729	-6.0443E-05	515.3132826849793	88.121	2.5023	87.951	87.583	90.085	-0.17054					142	60	5	0	0	0	0.01388	9	10712	10703;10712;10724;10735;10747;10760;10772;10787;10805		195.06	78.16	1	17686000			73584	2480;18139	51466	51549	80587;80588;80589;80590;80591;80592;80593;80594;80595	80588					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3123779296875	2	515.313158	1028.61176	0.25141	0.00012956	-0.44293	-0.00022825	-0.19152	-9.8691E-05	515.3129025105004	88.142	1.8035	88.011	87.606	89.41	-0.13135					130	43	5	0	0	0	0.01388	10	10768	10711;10721;10732;10744;10756;10768;10780;10794;10805;10818		195.06	84.944	1	15913000			73585	2480;18139	51466	51549	80596;80597;80598;80599;80600;80601;80602;80603;80604;80605	80601					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2;nc|ENSG00000103197|P49815-6|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.3134155273438	2	515.313158	1028.61176	0.10454	5.3873E-05	-0.41035	-0.00021146	-0.30581	-0.00015759	515.3129005168101	88.178	2.3709	88.041	87.627	89.998	-0.13744					141	56	5	0	0	0	0.01388	9	10705	10696;10705;10717;10728;10740;10753;10764;10778;10791		209.84	65.381	1	14031000			73586	2480;18139	51466	51549	80606;80607;80608;80609;80610;80611;80612;80613;80614	80607					0.098600669343341
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.286865234375	2	465.286943	928.559333	-1.2711	-0.00059142	0.69987	0.00032564	-0.57122	-0.00026578	465.2873997239226	75.288	1.964	75.288	74.835	76.799	0					162	50	5	0	0	0	0.086035	8	9214	9204;9214;9226;9238;9262;9274;9301;9332		115.49	8.4865	1	98323000			73587	8742	51467	51550	80615;80616;80617;80618;80619;80620;80621;80622	80616					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.286943	928.559333	-0.28781	-0.00013391	-0.28801	-0.00013401	-0.57582	-0.00026792	465.28695700621563	75.528	1.9587	75.284	74.878	76.837	-0.24454					166	50	5	0	0	0	0.03201	7	9209	9209;9219;9231;9243;9256;9268;9295		139.97	21.227	1	108540000			73588	8742	51467	51550	80623;80624;80625;80626;80627;80628;80629	80623					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.28717041015625	2	465.286943	928.559333	0.91711	0.00042672	-1.445	-0.00067235	-0.52792	-0.00024563	465.2864021780938	75.372	1.8424	75.382	74.973	76.815	0.010376					162	47	6	0	0	0	0.086035	9	9138	9138;9149;9173;9187;9199;9225;9237;9254;9331		115.49	16.119	1	105790000			73589	8742	51467	51550	80630;80631;80632;80633;80634;80635;80636;80637;80638	80630					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.287109375	2	465.286943	928.559333	-0.12485	-5.809E-05	-1.0831	-0.00050394	-1.2079	-0.00056203	465.2868143855361	75.593	2.1848	75.32	74.807	76.992	-0.27266					169	53	6	0	0	0	0.053401	7	8978	8893;8905;8917;8965;8978;8992;9059		127.46	8.7186	1	104440000			73590	8742	51467	51550	80639;80640;80641;80642;80643;80644;80645	80643					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.28656005859375	2	465.286943	928.559333	-0.23241	-0.00010814	-1.0854	-0.00050504	-1.3178	-0.00061317	465.2868513981878	75.517	2.1571	75.259	74.779	76.936	-0.25865					181	52	6	0	0	0	0.053401	8	8945	8909;8933;8945;8957;8969;8982;8995;9109		127.46	15.813	1	126510000			73591	8742	51467	51550	80646;80647;80648;80649;80650;80651;80652;80653	80648					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	nc|ENSG00000177469|Q6NZI2-2|CAVIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.2872009277344	2	465.286943	928.559333	0.077311	3.5972E-05	-1.4983	-0.00069716	-1.421	-0.00066119	465.2866194747693	75.428	2.5337	75.253	74.359	76.892	-0.17548					193	61	5	0	0	0	0.03201	10	8894	8872;8882;8894;8918;8930;8942;8955;8968;9006;9016		139.97	10.861	1	119020000			73592	8742	51467	51550	80654;80655;80656;80657;80658;80659;80660;80661;80662;80663	80656					0.09219528591370363
SLLDLEQKL	9	Unmodified	_SLLDLEQKL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MSMS	OPSCC_39_ClassI_Rep-1	1	529.8079223632812	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.577	1	71.577	71.077	72.077	0								0	0	0	0.042231	1	8682	8682		112.41	24.714	1				73593	1028	51468	51551	80664	80664					0.07542878928961727
SLLDLEQKL	9	Unmodified	_SLLDLEQKL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MSMS	OPSCC_39_ClassI_Rep-1	1	529.8082885742188	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.653	1	71.653	71.153	72.153	0								0	0	0	0.00483	1	8694	8694		176.09	32.2	1				73594	1028	51468	51551	80665	80665					0.07542878928961727
SLLDLEQKL	9	Unmodified	_SLLDLEQKL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MSMS	OPSCC_39_ClassI_Rep-2	2	529.8077392578125	2	529.808239	1057.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.914	1	71.625	71.125	72.125	-0.28858								0	0	0	0.014365	1	8693	8693		148.99	26.811	1				73595	1028	51468	51551	80666	80666					0.07542878928961727
SLLDLVPY	8	Unmodified	_SLLDLVPY_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2585754394531	2	460.260394	918.506234	-0.78059	-0.00035928	-3.5668	-0.0016417	-4.3474	-0.0020009	460.2588711712046	37.721	1.0896	37.721	37.305	38.395	0					74	31	4	0	0	0	0.52467	1	3122	3122		83.287	11.909	1	6674300	+		73596	24725	51469	51552	80667	80667					0.04372150808717379
SLLDLVPY	8	Unmodified	_SLLDLVPY_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2583923339844	2	460.260394	918.506234	-0.78412	-0.0003609	-3.3994	-0.0015646	-4.1835	-0.0019255	460.2588953860786	37.636	0.90883	37.572	37.127	38.036	-0.063385					57	25	4	0	0	0	0.65272	1	3100	3100		71.378	9.6866	1	6142900	+		73597	24725	51469	51552	80668	80668					0.04372150808717379
SLLDLVPY	8	Unmodified	_SLLDLVPY_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2585144042969	2	460.260394	918.506234	-0.24897	-0.00011459	-4.0725	-0.0018744	-4.3215	-0.001989	460.25856264085667	37.736	1.1098	37.769	37.226	38.336	0.032269					73	30	5	0	0	0	0.65272	1	3067	3067		71.378	14.944	1	6187500	+		73598	24725	51469	51552	80669	80669					0.04372150808717379
SLLDLVPY	8	Unmodified	_SLLDLVPY_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2581787109375	2	460.260394	918.506234	-0.94102	-0.00043312	-3.5074	-0.0016143	-4.4484	-0.0020474	460.25865904132075	37.869	0.47683	37.65	37.384	37.861	-0.21848					33	12	3	0	0	0	0.78609	1	3072	3072		60.294	0	1	1626600	+		73599	24725	51469	51552	80670	80670					0.04372150808717379
SLLDNLLTI	9	Unmodified	_SLLDNLLTI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.297119140625	2	501.297507	1000.58046	-0.023163	-1.1611E-05	-0.00069687	-3.4934E-07	-0.023859	-1.1961E-05	501.2974103211521	103.99	0.50505	103.99	103.74	104.24	0					20	11	2	0	0	0	0.013065	3	13340	13329;13340;13353		171.53	59.884	1	537540			73600	8622	51470	51553	80671;80672;80673	80672					0.08019493900224006
SLLDNLLTI	9	Unmodified	_SLLDNLLTI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.297119140625	2	501.297507	1000.58046	-0.082285	-4.1249E-05	0.79818	0.00040013	0.7159	0.00035888	501.2975567307312	103.94	0.84462	103.95	103.7	104.55	0.0031357					34	21	2	0	0	0	0.014454	3	13306	13297;13306;13316		185.55	56.863	1	481730			73601	8622	51470	51553	80674;80675;80676	80675					0.08019493900224006
SLLDNLLTI	9	Unmodified	_SLLDNLLTI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2970275878906	2	501.297507	1000.58046	0.22626	0.00011342	-0.26795	-0.00013432	-0.041689	-2.0899E-05	501.29727219355806	104.02	0.48393	104.01	103.77	104.25	-0.0032196					21	11	2	0	0	0	0.043667	3	13265	13265;13278;13289		131.03	24.767	1	523730			73602	8622	51470	51553	80677;80678;80679	80677					0.08019493900224006
SLLDNLLTI	9	Unmodified	_SLLDNLLTI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29840087890625	2	501.297507	1000.58046	0.29069	0.00014572	-0.0055205	-2.7674E-06	0.28517	0.00014296	501.29735806780565	103.93	0.38493	103.81	103.65	104.03	-0.12561					16	8	2	0	0	0	0.26966	1	12942	12942		79.713	22.992	1	169430			73603	8622	51470	51553	80680	80680					0.08019493900224006
SLLDNLLTI	9	Unmodified	_SLLDNLLTI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.297507	1000.58046	0.041268	2.0688E-05	-0.070675	-3.5429E-05	-0.029407	-1.4742E-05	501.2974043222607	104.07	0.40517	103.9	103.68	104.08	-0.16791	-0.012491	-9.4053E-05	NaN	171.53	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154430			73604	8622	51470	51553							0.08019493900224006
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_		SLLDNM(1)IGV		SLLDNM(120)IGV	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.25244140625	2	489.252243	976.489932	-0.33679	-0.00016477	0.46681	0.00022839	0.13002	6.3613E-05	489.252377099509	79.765	3.9563	79.765	78.323	82.279	0					151	95	2	0	0	0	0.086035	2	9905	9886;9905		115.49	45.866	1	594800			73605	4305	51471	51554	80681;80682	80682		169			0.0007470158031992469
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_		SLLDNM(1)IGV		SLLDNM(200)IGV	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2518005371094	2	489.252243	976.489932	-0.29787	-0.00014574	0.43465	0.00021265	0.13678	6.6919E-05	489.2523068884049	73.718	0.59542	73.446	73.05	73.646	-0.27126					39	15	4	0	0	0	0.015841	3	8962	8962;8972;8987		195.81	102.62	1	3189600			73606	4305	51471	51554	80683;80684;80685	80683		169			0.0007470158031992469
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_		SLLDNM(1)IGV		SLLDNM(140)IGV	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2521057128906	2	489.252243	976.489932	-1.0232	-0.00050059	1.1261	0.00055095	0.10294	5.0363E-05	489.2526860190788	79.846	2.7935	79.674	78.986	81.78	-0.17226					112	67	2	0	0	0	0.03201	3	9891	9881;9891;9907		139.97	49.518	1	562000			73607	4305	51471	51554	80686;80687;80688	80687		169			0.0007470158031992469
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_		SLLDNM(1)IGV		SLLDNM(200)IGV	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.25152587890625	2	489.252243	976.489932	-0.58358	-0.00028552	0.77049	0.00037696	0.18691	9.1445E-05	489.2524932401776	73.398	0.65405	73.407	72.986	73.64	0.0096512					39	16	3	0	0	0	0.015841	3	8884	8874;8884;8898		211.39	109.79	1	3096300			73608	4305	51471	51554	80689;80690;80691	80690		169			0.0007470158031992469
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_		SLLDNM(1)IGV		SLLDNM(170)IGV	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2519836425781	2	489.252243	976.489932	-0.7537	-0.00036875	0.9871	0.00048294	0.2334	0.00011419	489.25256615385956	79.696	3.3217	79.717	78.821	82.143	0.021446					137	80	3	0	0	0	0.014034	1	9830	9830		166.68	72.672	1	488800			73609	4305	51471	51554	80692	80692		169			0.0007470158031992469
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_					0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.252243	976.489932	-0.45058	-0.00022045	1.4423	0.00070567	0.99177	0.00048523	489.2523724452475	73.74	0.47102	73.463	73.214	73.685	-0.2769	0.02861	0.00075199	NaN	195.81	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	914990			73610	4305	51471	51554				169			0.0007470158031992469
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_					0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.252243	976.489932	-0.16472	-8.0591E-05	2.1765	0.0010649	2.0118	0.00098426	489.25226666158756	73.704	0.50936	73.439	73.178	73.687	-0.26479	0.0047172	0.0014704	NaN	195.81	39	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558780			73611	4305	51471	51554				169			0.0007470158031992469
SLLDNMIGV	9	Oxidation (M)	_SLLDNM(Oxidation (M))IGV_					0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.252243	976.489932	0.10743	5.2561E-05	1.6646	0.00081442	1.7721	0.00086698	489.25208226357586	73.606	0.63611	73.416	73.007	73.643	-0.19026	-0.01826	0.00096949	NaN	195.81	48	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576660			73612	4305	51471	51554				169			0.0007470158031992469
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2550354003906	2	481.254785	960.495018	-0.12789	-6.1548E-05	0.55658	0.00026786	0.42869	0.00020631	481.2548679082419	89.754	1.6179	89.754	89.144	90.762	0					103	38	4	0	0	0	0.012289	4	11343	11320;11331;11343;11364		227.71	103.72	1	3128500			73613	4305	51471	51555	80693;80694;80695;80696	80695					0.013190054429401243
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2552185058594	2	481.254785	960.495018	0.35908	0.00017281	0.062806	3.0226E-05	0.42189	0.00020303	481.2546576449103	89.782	1.4933	89.761	89.241	90.734	-0.021645					105	35	4	0	0	0	0.015901	4	11297	11286;11297;11308;11321		157.33	61.139	1	2978400			73614	4305	51471	51555	80697;80698;80699;80700	80698					0.013190054429401243
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.25518798828125	2	481.254785	960.495018	0.048073	2.3135E-05	0.29683	0.00014285	0.3449	0.00016599	481.2548110779651	89.786	1.2764	89.799	89.467	90.744	0.013443					73	30	3	0	0	0	0.013333	4	11273	11250;11260;11273;11285		176.41	73.637	1	3079300			73615	4305	51471	51555	80701;80702;80703;80704	80703					0.013190054429401243
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2555847167969	2	481.254785	960.495018	-0.39184	-0.00018857	1.0068	0.00048452	0.61496	0.00029595	481.25499802120373	89.835	1.338	89.672	89.215	90.553	-0.1626					76	31	4	0	0	0	0.014988	2	10965	10965;10976		161.9	78.781	1	955140			73616	4305	51471	51555	80705;80706	80705					0.013190054429401243
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.25506591796875	2	481.254785	960.495018	-0.53625	-0.00025807	0.73223	0.00035239	0.19598	9.4317E-05	481.25508660779707	89.835	0.75425	89.707	89.37	90.124	-0.12775					32	17	2	0	0	0	0.014988	2	10980	10980;10991		161.9	71.122	1	924520			73617	4305	51471	51555	80707;80708	80707					0.013190054429401243
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.25579833984375	2	481.254785	960.495018	0.45453	0.00021875	0.4445	0.00021392	0.89903	0.00043266	481.2545851405559	89.876	1.3464	89.738	89.358	90.704	-0.13824					95	31	5	0	0	0	0.013333	3	10959	10959;10971;10984		176.41	80.22	1	907300			73618	4305	51471	51555	80709;80710;80711	80709					0.013190054429401243
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.76947021484375	2	484.768583	967.522613	-0.46994	-0.00022781	0.27988	0.00013568	-0.19006	-9.2136E-05	484.7686143949023	80.141	0.96262	80.141	79.744	80.707	0					52	22	4	0	0	0	0.015925	3	9958	9946;9958;9970		157.21	23.396	1	3637000			73619	1896	51472	51556	80712;80713;80714	80713					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.769287109375	2	484.768583	967.522613	-1.1042	-0.0005353	0.87579	0.00042456	-0.22844	-0.00011074	484.7689190964646	80.308	0.9203	80.156	79.8	80.721	-0.15169					58	21	4	0	0	0	0.028071	3	9953	9941;9953;9965		143.11	22.486	1	2772800			73620	1896	51472	51556	80715;80716;80717	80716					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.76959228515625	2	484.768583	967.522613	-0.9433	-0.00045728	0.78084	0.00037853	-0.16246	-7.8757E-05	484.7688730397489	80.189	0.95557	80.21	79.855	80.811	0.021439					58	22	4	0	0	0	0.014013	4	9881	9870;9881;9893;9906		166.78	23.676	1	3986700			73621	1896	51472	51556	80718;80719;80720;80721	80719					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.76873779296875	2	484.768583	967.522613	0.35653	0.00017284	-0.39928	-0.00019356	-0.042749	-2.0723E-05	484.76831097020835	80.276	0.82599	80.038	79.705	80.531	-0.23784					50	19	4	0	0	0	0.12602	2	9609	9609;9621		104.75	10.345	1	1321400			73622	1896	51472	51556	80722;80723	80722					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.7688903808594	2	484.768583	967.522613	0.25115	0.00012175	-0.3237	-0.00015692	-0.072547	-3.5168E-05	484.7682969005074	80.264	0.75146	80.057	79.757	80.508	-0.20633					46	17	3	0	0	0	0.20967	3	9641	9629;9641;9653		87.754	8.3033	1	1845800			73623	1896	51472	51556	80724;80725;80726	80725					0.03755231974810158
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.7690124511719	2	484.768583	967.522613	0.26129	0.00012666	-0.32871	-0.00015935	-0.067418	-3.2682E-05	484.7682768642319	80.198	1.1542	80.052	79.701	80.855	-0.146					55	27	3	0	0	0	0.11092	4	9590	9590;9600;9614;9626		108.09	20.333	1	2167600			73624	1896	51472	51556	80727;80728;80729;80730	80727					0.03755231974810158
SLLDQLLK	8	Unmodified	_SLLDQLLK_					0	0	0			REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2870178222656	2	465.286943	928.559333	-0.12485	-5.809E-05	-1.0831	-0.00050394	-1.2079	-0.00056203	465.2868143855361	75.593	2.1848	75.32	74.807	76.992	-0.27266					169	53	6	0	0	0	0.30694	1	8929	8929		110.12	0	1	104440000	+		73625	26885	51473	51557	80731	80731					0.09219528591381732
SLLDSVVGL	9	Unmodified	_SLLDSVVGL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.78106689453125	2	451.7633	901.512048	-0.2641	-0.00011931	0.60132	0.00027166	0.33722	0.00015234	451.76347374156074	78.003	0.9056	78.019	77.658	78.564	0.015907					51	21	3	0	0	0	0.015527	1	9590	9590		114.59	20.579	1	956780			73626	7346	51474	51558	80732	80732					0.057352493203779886
SLLDYTTK	8	Unmodified	_SLLDYTTK_					0	0	0		ENSG00000215029|ENST00000642911|TCP11X2;ENSG00000268235|ENST00000622971|TCP11X1;nc|ENSG00000268235|B4DZS4-2|TCP11X1	ENSG00000215029|ENST00000642911|TCP11X2	ENSG00000215029|ENST00000642911|TCP11X2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7688293457031	2	470.752933	939.491313	-0.31664	-0.00014906	-2.8711	-0.0013516	-3.1877	-0.0015006	470.7516241387627	25.252	0.35428	25.252	25.009	25.363	0					13	8	2	0	0	0	0.027866	1	1154	1154		29.15	0	1	46422			73627	10579	51475	51559	80733	80733					0.019146589407114334
SLLEGRTEV	9	Unmodified	_SLLEGRTEV_					0	0	0			REV__ENSG00000164062|ENST00000296456|APEH	REV__ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.27459716796875	2	502.274564	1002.53457	-0.34479	-0.00017318	-0.40971	-0.00020579	-0.75449	-0.00037896	502.2743666614946	48.637	1.8074	48.637	48.277	50.084	0					145	50	5	0	0	0	0.27161	1	5001	5001		79.451	2.6044	1	33137000	+		73628	25682	51476	51560	80734	80734					0.03340848718016787
SLLEITFRS	9	Unmodified	_SLLEITFRS_					0	0	0		ENST00000454693.1_1_1:162336721-162337254:+|nuORF;nc|ENSG00000198929|O75052-2|NOS1AP;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	ENST00000454693.1_1_1:162336721-162337254:+|nuORF	ENST00000454693.1_1_1:162336721-162337254:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.281005859375	2	533.300581	1064.58661	-0.75265	-0.00040139	0.12958	6.9105E-05	-0.62307	-0.00033228	533.3006988851184	54.312	0.41266	54.176	54.021	54.434	-0.13617					19	11	2	0	0	0	0.024495	1	5744	5744		26.693	1.2427	1	189780			73629	10254	51477	51561	80735	80735					0.05690012131753974
SLLEKMIVS	9	Unmodified	_SLLEKMIVS_					0	0	0		ENST00000261609.11_1_15:28538126-28544646:-|nuORF	ENST00000261609.11_1_15:28538126-28544646:-|nuORF	ENST00000261609.11_1_15:28538126-28544646:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.27374267578125	2	510.293911	1018.57327	-0.85466	-0.00043613	2.6912	0.0013733	1.8365	0.00093717	510.29492319668657	90.52	0.20853	90.395	90.208	90.416	-0.12512					6	4	2	0	0	0	0.024484	1	11082	11082		30.318	10.321	1	55191			73630	11478	51478	51562	80736	80736					0.06472438028163197
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant;nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.29229736328125	2	480.292225	958.569897	-0.45661	-0.00021931	0.54306	0.00026083	0.086448	4.152E-05	480.2924108636501	65.139	0.87646	65.139	64.69	65.566	0					75	24	5	0	0	0	0.015032	4	7691	7670;7681;7691;7703		190.26	59.23	1	19938000			73631	683	51479	51563	80737;80738;80739;80740	80739					0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant;nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2920837402344	2	480.292225	958.569897	-0.68956	-0.00033119	0.85128	0.00040886	0.16171	7.7669E-05	480.2925776146441	65.381	1.0103	65.108	64.748	65.758	-0.27282					84	27	5	0	0	0	0.013065	3	7691	7680;7691;7703		171.53	32.706	1	15450000			73632	683	51479	51563	80741;80742;80743	80742					0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant;nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2920227050781	2	480.292225	958.569897	-0.36883	-0.00017714	0.60604	0.00029108	0.23721	0.00011393	480.2924384469498	65.062	1.1116	65.1	64.595	65.706	0.037376					78	30	4	0	0	0	0.014738	4	7602	7589;7602;7615;7639		163.15	24.325	1	14867000			73633	683	51479	51563	80744;80745;80746;80747	80745					0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant;nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.292225	958.569897	0.059295	2.8479E-05	0.29741	0.00014284	0.3567	0.00017132	480.2921869179622	65.39	0.65926	65.149	64.883	65.542	-0.24145	0.016223	-0.0004102	NaN	171.53	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	707260			73634	683	51479	51563							0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant;nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.292225	958.569897	-1.4844	-0.00071297	1.7711	0.00085063	0.28662	0.00013766	480.2929482345329	65.358	0.61519	65.155	64.859	65.474	-0.20254	0.023022	0.0010054	NaN	171.53	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825910			73635	683	51479	51563							0.08895511245816579
SLLEKSLGL	9	Unmodified	_SLLEKSLGL_					0	0	0		EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant;nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	EEF1E1|p.E6Q|1|0.09|ENSG00000124802|chr6:8102506-8102506|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.292225	958.569897	-0.26689	-0.00012819	0.51035	0.00024512	0.24346	0.00011693	480.29228944454064	65.395	0.5736	65.144	64.905	65.479	-0.25111	0.011338	-0.00020565	NaN	171.53	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	832490			73636	683	51479	51563							0.08895511245816579
SLLENIAKA	9	Unmodified	_SLLENIAKA_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.78167724609375	2	479.782025	957.549496	-0.21223	-0.00010183	0.40128	0.00019253	0.18905	9.0703E-05	479.7820374473373	57.592	0.61776	57.414	57.096	57.714	-0.17775					46	15	4	0	0	0	0.013065	4	6281	6281;6293;6305;6318		171.53	18.496	1	5776600			73637	9358	51480	51564	80748;80749;80750;80751	80748					0.0690234058599799
SLLENIAKA	9	Unmodified	_SLLENIAKA_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7825012207031	2	479.782025	957.549496	0.012291	5.8972E-06	-0.037785	-1.8129E-05	-0.025494	-1.2232E-05	479.78185606659406	57.591	0.677	57.4	57.112	57.789	-0.19018					54	17	4	0	0	0	0.071379	3	6299	6299;6311;6325		120.87	15.826	1	5899400			73638	9358	51480	51564	80752;80753;80754	80752					0.0690234058599799
SLLENIAKA	9	Unmodified	_SLLENIAKA_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7820739746094	2	479.782025	957.549496	-0.35617	-0.00017088	0.28187	0.00013523	-0.074304	-3.565E-05	479.7820419147621	57.715	0.53991	57.482	57.2	57.74	-0.23363					42	13	4	0	0	0	0.048057	2	6311	6300;6311		129.42	8.2122	1	6497900			73639	9358	51480	51564	80755;80756	80756					0.0690234058599799
SLLENIAKA	9	Unmodified	_SLLENIAKA_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.782025	957.549496	-0.42348	-0.00020318	0.89819	0.00043094	0.47471	0.00022776	479.7822866065809	57.349	0.59648	57.445	57.051	57.647	0.095306	-0.01033	0.00073764	NaN	171.53	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6466600			73640	9358	51480	51564							0.0690234058599799
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.80810546875	2	529.808239	1057.60193	-1.0657	-0.0005646	0.19088	0.00010113	-0.87479	-0.00046347	529.8083998354356	73.309	1.6822	73.309	72.952	74.635	0					122	41	5	0	0	0	0.0089529	6	8972	8914;8925;8936;8960;8972;8995		239.13	4.6552	1	95296000			73641	1983	51481	51565	80757;80758;80759;80760;80761;80762	80761					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8077392578125	2	529.808239	1057.60193	-0.58392	-0.00030937	-0.28727	-0.0001522	-0.87119	-0.00046157	529.8081495214216	73.635	1.5973	73.364	73.009	74.606	-0.27126					131	39	5	0	0	0	0.0089529	4	8930	8930;8965;8983;9029		239.13	4.4294	1	82934000			73642	1983	51481	51565	80763;80764;80765;80766	80763					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.8089599609375	2	529.808239	1057.60193	-0.36331	-0.00019249	-0.57789	-0.00030617	-0.9412	-0.00049866	529.8080070690384	73.297	1.7458	73.307	72.944	74.69	0.0096512					111	42	5	0	0	0	0.0089529	3	8900	8864;8900;8924		239.13	4.6552	1	98416000			73643	1983	51481	51565	80767;80768;80769	80768					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.8082275390625	2	529.808239	1057.60193	-0.3452	-0.00018289	-0.36565	-0.00019373	-0.71086	-0.00037662	529.8080422672316	73.509	0.84004	73.232	72.884	73.724	-0.2769					91	20	6	0	0	0	0.0089529	4	8654	8618;8630;8654;8681		239.13	0	1	22152000			73644	1983	51481	51565	80770;80771;80772;80773	80772					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.8079223632812	2	529.808239	1057.60193	-0.78142	-0.000414	0.015528	8.2267E-06	-0.76589	-0.00040578	529.8082317432481	73.502	1.0014	73.237	72.724	73.725	-0.26479					91	24	6	0	0	0	0.014115	4	8651	8631;8651;8689;8702		223.88	0	1	23172000			73645	1983	51481	51565	80774;80775;80776;80777	80775					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		ENST00000553444.1_1_14:21679384-21680083:-|nuORF;nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	ENST00000553444.1_1_14:21679384-21680083:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8084716796875	2	529.808239	1057.60193	-0.34993	-0.00018539	-0.36997	-0.00019602	-0.7199	-0.00038141	529.8080245678844	73.293	1.0508	73.103	72.633	73.683	-0.19026					95	25	5	0	0	0	0.0088231	5	8626	8579;8590;8601;8613;8626		271.48	4.1625	1	20551000			73646	1983	51481	51565	80778;80779;80780;80781;80782	80782					0.07542878928961727
SLLEPFVYL	9	Unmodified	_SLLEPFVYL_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.802734375	2	540.802426	1079.5903	-0.72246	-0.00039071	-2.2724	-0.0012289	-2.9948	-0.0016196	540.8026227011625	101.88	1.2406	101.88	101.28	102.53	0					87	27	4	0	0	0	0.074956	3	13056	13056;13068;13081		119.56	42.71	1	2719300			73647	7800	51482	51566	80783;80784;80785	80783					0.053686819056110835
SLLEPFVYL	9	Unmodified	_SLLEPFVYL_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8026123046875	2	540.802426	1079.5903	-0.66375	-0.00035896	-2.2695	-0.0012274	-2.9333	-0.0015863	540.8026008812884	101.81	1.2524	101.82	101.29	102.55	0.0073471					77	28	4	0	0	0	0.11848	2	13019	13019;13029		106.42	43.109	1	2582800			73648	7800	51482	51566	80786;80787	80786					0.053686819056110835
SLLEPFVYL	9	Unmodified	_SLLEPFVYL_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MSMS	OPSCC_39_ClassI_Rep-3	3	540.8024291992188	2	540.802426	1079.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.01	1	102.01	101.51	102.51	-0.0054474								0	0	0	0.027618	1	12988	12988		119.56	42.239	1				73649	7800	51482	51566	80788	80788					0.053686819056110835
SLLEPFVYL	9	Unmodified	_SLLEPFVYL_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MSMS	OPSCC_39_ClassI_Rep-3	3	540.802734375	2	540.802426	1079.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.11	1	102.1	101.6	102.6	-0.0054474								0	0	0	0.55237	1	13001	13001		45.952	14.422	1				73650	7800	51482	51566	80789	80789					0.053686819056110835
SLLEPFVYL	9	Unmodified	_SLLEPFVYL_					0	0	0		nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	nc|ENSG00000168256|Q9NYR9-3|NKIRAS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.802426	1079.5903	-0.64951	-0.00035126	0.71971	0.00038922	0.070197	3.7963E-05	541.3041510934161	102.36	0.11763	102.19	102.09	102.2	-0.17178	0.22566	0.0024549	NaN	119.56	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23312			73651	7800	51482	51566							0.053686819056110835
SLLEQGLVEA	10	Unmodified	_SLLEQGLVEA_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2;nc|ENSG00000109685|O96028-7|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7886962890625	2	529.790047	1057.56554	0.23925	0.00012675	-0.0095857	-5.0784E-06	0.22967	0.00012168	529.7898578308502	72.146	1.1298	71.864	71.62	72.75	-0.28124					64	28	3	0	0	0	0.44975	1	8740	8740		93.598	20.718	1	2150200			73652	2990	51483	51567	80790	80790					0.03906002032249489
SLLEQGLVEA	10	Unmodified	_SLLEQGLVEA_					0	0	0		ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-5|NSD2;nc|ENSG00000109685|O96028-3|NSD2;nc|ENSG00000109685|O96028-7|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF	ENSG00000109685|ENST00000508803|NSD2	ENSG00000109685|ENST00000508803|NSD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	529.790047	1057.56554	0.33411	0.00017701	-0.23665	-0.00012537	0.09746	5.1633E-05	529.7898634833272	71.889	1.5258	71.899	71.085	72.611	0.0097656	0.040031	-0.00012698	NaN	93.598	91	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1992300			73653	2990	51483	51567							0.03906002032249489
SLLESVQKL	9	Unmodified	_SLLESVQKL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.80267333984375	2	508.802957	1015.59136	-0.94762	-0.00048215	0.048514	2.4684E-05	-0.8991	-0.00045747	508.8028527170059	62.687	1.0383	62.687	62.446	63.485	0					66	26	3	0	0	0	0.013293	3	7308	7292;7308;7321		176.09	41.276	1	3434600			73654	163	51484	51568	80791;80792;80793	80792					0.08418896274520193
SLLESVQKL	9	Unmodified	_SLLESVQKL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.8027648925781	2	508.802957	1015.59136	-0.77652	-0.0003951	-0.036407	-1.8524E-05	-0.81293	-0.00041362	508.80279941343156	62.891	1.1114	62.652	62.419	63.53	-0.23926					74	28	4	0	0	0	0.014918	2	7316	7298;7316		190.52	42.475	1	3690300			73655	163	51484	51568	80794;80795	80795					0.08418896274520193
SLLESVQKL	9	Unmodified	_SLLESVQKL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.80255126953125	2	508.802957	1015.59136	0.13865	7.0545E-05	-0.95592	-0.00048638	-0.81727	-0.00041583	508.8023426889184	62.638	1.1578	62.701	62.442	63.6	0.062767					72	29	3	0	0	0	0.014918	3	7218	7208;7218;7231		162.25	35.575	1	3717100			73656	163	51484	51568	80796;80797;80798	80797					0.08418896274520193
SLLESVQKL	9	Unmodified	_SLLESVQKL_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.802957	1015.59136	-0.11529	-5.866E-05	-0.51674	-0.00026292	-0.63204	-0.00032158	508.80263911987714	62.943	1.0691	62.684	62.606	63.675	-0.25824	0.0032726	-0.00019698	NaN	176.09	39	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649010			73657	163	51484	51568							0.08418896274520193
SLLFAFHII	9	Unmodified	_SLLFAFHII_					0	0	0			REV__ENSG00000158156|ENST00000373884|XKR8	REV__ENSG00000158156|ENST00000373884|XKR8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7756958007812	2	530.813128	1059.6117	-0.19764	-0.00010491	1.2701	0.0006742	1.0725	0.00056929	530.8155082397337	56.947	0.29264	56.744	56.633	56.926	-0.20208					12	7	2	0	0	0	0.024386	1	6220	6220		25.45	0	1	112470	+		73658	25178	51485	51569	80799	80799					0.0842811172499296
SLLFGQNI	8	Unmodified	_SLLFGQNI_					0	0	0		nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-1|TNPO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	445.7386169433594	2	446.25036	890.486168	-0.24276	-0.00010833	0.2995	0.00013365	0.056738	2.5319E-05	446.25043402129563	65.366	0.88175	65.366	64.8	65.681	0					28	24	2	0	0	0	0.027866	1	7718	7718		45.952	0	1	157180			73659	18063	51486	51570	80800	80800					0.03654399868753444
SLLFMYKV	8	Unmodified	_SLLFMYKV_					0	0	0		ENST00000522658.5_1_8:101717867-101718943:-|nuORF	ENST00000522658.5_1_8:101717867-101718943:-|nuORF	ENST00000522658.5_1_8:101717867-101718943:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.74578857421875	2	500.780439	999.546325	-0.25575	-0.00012807	-3.5768	-0.0017912	-3.8326	-0.0019193	500.77919234931704	41.205	0.18998	41.069	40.947	41.137	-0.13553					6	4	2	0	0	0	0.027866	1	3626	3626		18.324	0	1	72423			73660	16032	51487	51571	80801	80801					0.04653374207634897
SLLGASPTIY	10	Unmodified	_SLLGASPTIY_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.75311279296875	2	511.281857	1020.54916	-0.30947	-0.00015823	-0.21249	-0.00010864	-0.52197	-0.00026687	511.2810701102245	45.863	0.21494	45.602	45.451	45.666	-0.26118					7	5	2	0	0	0	0.03519	1	4378	4378		73.975	0	1	94280			73661	1231	51488	51572	80802	80802					0.03970920866140659
SLLGASVVPF	10	Unmodified	_SLLGASVVPF_					0	0	0		nc|ENSG00000104635|Q15043-2|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	nc|ENSG00000104635|Q15043-2|SLC39A14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.3232116699219	2	495.286943	988.559333	-0.25608	-0.00012683	-3.6237	-0.0017947	-3.8797	-0.0019216	495.2854482562233	64.311	0.51363	64.048	63.827	64.341	-0.2626					22	13	3	0	0	0	0.03519	1	7530	7530		21.96	6.3181	1	317830			73662	2585	51489	51573	80803	80803					0.06459528591381059
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.30810546875	2	565.308603	1128.60265	-1.1971	-0.00067672	0.70793	0.0004002	-0.48915	-0.00027652	565.3089299712168	83.757	1.0703	83.757	83.393	84.463	0					79	24	5	0	0	0	4.9899E-13	4	10473	10464;10473;10485;10498		218.58	69.59	1	2774700			73663	9787	51490	51574	80804;80805;80806;80807	80805					0.043496735779854134
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.3086547851562	2	565.308603	1128.60265	-1.0421	-0.00058909	0.74244	0.00041971	-0.29963	-0.00016938	565.3089889101693	83.795	0.86028	83.704	83.427	84.287	-0.090454					67	19	5	0	0	0	4.9745E-14	3	10450	10440;10450;10462		232.83	61.302	1	3119800			73664	9787	51490	51574	80808;80809;80810	80809					0.043496735779854134
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.3087768554688	2	565.308603	1128.60265	-1.3647	-0.00077149	1.1085	0.00062662	-0.25626	-0.00014487	565.3091360141013	83.697	1.1179	83.724	83.257	84.375	0.026558					75	25	5	0	0	0	1.0518E-09	3	10391	10382;10391;10403		204.42	59.269	1	2816300			73665	9787	51490	51574	80811;80812;80813	80812					0.043496735779854134
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.3095703125	2	565.308603	1128.60265	0.62744	0.00035469	-0.6549	-0.00037022	-0.027466	-1.5527E-05	565.3081093204862	83.821	0.68378	83.651	83.369	84.052	-0.16916					33	15	3	0	0	0	0.38769	1	10141	10141		83.647	20.113	1	477980			73666	9787	51490	51574	80814	80814					0.043496735779854134
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.3090209960938	2	565.308603	1128.60265	0.21459	0.00012131	-0.38718	-0.00021888	-0.17259	-9.7569E-05	565.308250458912	83.817	0.68334	83.678	83.424	84.107	-0.13861					36	15	4	0	0	0	0.10031	1	10108	10108		109.44	10.857	1	447200			73667	9787	51490	51574	80815	80815					0.043496735779854134
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.308603	1128.60265	0.60763	0.0003435	-0.93845	-0.00053051	-0.33082	-0.00018701	565.308080991122	83.872	0.76482	83.661	83.308	84.073	-0.21159	-0.035396	-0.001814	NaN	232.83	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469740			73668	9787	51490	51574							0.043496735779854134
SLLGFLFVTGL	11	Unmodified	_SLLGFLFVTGL_					0	0	0			REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.841552734375	2	583.844625	1165.6747	-0.76292	-0.00044543	-4.1121	-0.0024008	-4.875	-0.0028462	583.8419796773813	18.108	0.44604	17.901	17.664	18.11	-0.20669					19	8	3	0	0	0	1.0238	1	259	259		31.53	0	1	83880	+		73669	20779	51491	51575	80816	80816					0.09848632722355433
SLLGFLFVTGL	11	Unmodified	_SLLGFLFVTGL_					0	0	0			REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	583.844625	1165.6747	0.76873	0.00044882	-5.234	-0.0030558	-4.4653	-0.002607	583.8411462295163	18.099	0.39284	17.943	17.755	18.148	-0.15637	0.028435	-0.00024397	NaN	31.53	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88422	+		73670	20779	51491	51575							0.09848632722355433
SLLGFLFVTGL	11	Unmodified	_SLLGFLFVTGL_					0	0	0			REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	583.844625	1165.6747	-0.76292	-0.00044543	-4.1121	-0.0024008	-4.875	-0.0028462	583.8419796773813	18.108	0.44604	17.901	17.664	18.11	-0.20669	-0.013523	0.0010661	NaN	31.53	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83880	+		73671	20779	51491	51575							0.09848632722355433
SLLGFLFVTGL	11	Unmodified	_SLLGFLFVTGL_					0	0	0			REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	REV__nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	583.844625	1165.6747	3.0434	0.0017769	-7.5101	-0.0043848	-4.4667	-0.0026079	583.8400631978187	18.142	0.39709	17.899	17.677	18.074	-0.24256	-0.014912	-0.0029018	NaN	31.53	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55983	+		73672	20779	51491	51575							0.09848632722355433
SLLGFLSGGL	10	Unmodified	_SLLGFLSGGL_					0	0	0			REV__nc|ENSG00000092931|O43934-2|MFSD11	REV__nc|ENSG00000092931|O43934-2|MFSD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.27899169921875	2	482.279118	962.543683	-0.083779	-4.0405E-05	0.25924	0.00012503	0.17546	8.4621E-05	482.2791046379828	82.345	1.3142	82.345	81.909	83.223	0					67	30	4	0	0	0	0.96965	1	10301	10301		49.442	8.6634	1	1677500	+		73673	20942	51492	51576	80817	80817					0.06091242074330694
SLLGGDVVSV	10	Unmodified	_SLLGGDVVSV_					0	0	0		nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.26617431640625	2	473.266207	944.517862	-0.22439	-0.0001062	0.10323	4.8855E-05	-0.12116	-5.7341E-05	473.26621209269484	75.987	1.5336	75.715	75.227	76.761	-0.27266					91	37	4	0	0	0	9.7759E-05	4	8981	8981;8990;9003;9017		205.58	90.088	1	6100000			73674	18409	51493	51577	80818;80819;80820;80821	80818					0.04338347832049294
SLLGGDVVSV	10	Unmodified	_SLLGGDVVSV_					0	0	0		nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.26641845703125	2	473.266207	944.517862	-0.062237	-2.9454E-05	-0.021223	-1.0044E-05	-0.08346	-3.9499E-05	473.2661343408954	75.936	1.2728	75.677	74.949	76.221	-0.25866					84	31	4	0	0	0	1.1117E-05	4	9000	8989;9000;9013;9033		221.33	88.569	1	6348400			73675	18409	51493	51577	80822;80823;80824;80825	80823					0.04338347832049294
SLLGGDVVSV	10	Unmodified	_SLLGGDVVSV_					0	0	0		nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	nc|ENSG00000157514|Q99576|TSC22D3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.26641845703125	2	473.266207	944.517862	-0.033216	-1.572E-05	-0.12008	-5.6828E-05	-0.15329	-7.2548E-05	473.26607219258347	75.802	1.6154	75.627	75.029	76.645	-0.17548					95	39	4	0	0	0	0.0011876	5	8967	8958;8967;8980;8992;9005		190.52	75.024	1	6163400			73676	18409	51493	51577	80826;80827;80828;80829;80830	80827					0.04338347832049294
SLLGHHVGPVL	11	Unmodified	_SLLGHHVGPVL_					0	0	0		ENST00000366971.8_1_1:213032234-213037122:+|nuORF	ENST00000366971.8_1_1:213032234-213037122:+|nuORF	ENST00000366971.8_1_1:213032234-213037122:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.82763671875	2	564.82984	1127.64513	-0.39505	-0.00022313	-3.4823	-0.0019669	-3.8774	-0.0021901	564.8277793573004	31.108	0.63587	30.867	30.585	31.221	-0.24109					42	15	4	0	0	0	1.0119	1	2053	2053		34.173	2.6427	1	1387000			73677	12831	51494	51578	80831	80831					0.08641113496878461
SLLGHLMIV	9	Oxidation (M)	_SLLGHLM(Oxidation (M))IV_		SLLGHLM(1)IV		SLLGHLM(89)IV	0	0	1		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7876892089844	2	499.788795	997.563038	0.81192	0.00040579	-0.37864	-0.00018924	0.43327	0.00021655	499.78843021460807	71.083	1.1254	71.083	70.744	71.869	0					77	28	4	0	0	0	0.20304	2	8616	8603;8616		88.643	25.337	1	3276500			73678	7951	51495	51579	80832;80833	80833		331			0.06415875093591694
SLLGHLMIV	9	Oxidation (M)	_SLLGHLM(Oxidation (M))IV_		SLLGHLM(1)IV		SLLGHLM(89)IV	0	0	1		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.787841796875	2	499.788795	997.563038	0.15613	7.8034E-05	0.085236	4.26E-05	0.24137	0.00012063	499.78874525959634	71.173	0.94558	71.184	70.896	71.842	0.010735					66	24	4	0	0	0	0.20304	2	8556	8541;8556		88.643	19.856	1	3284400			73679	7951	51495	51579	80834;80835	80835		331			0.06415875093591694
SLLGPILSCV	10	Unmodified	_SLLGPILSCV_					0	0	0		nc|ENSG00000138617|Q8N5Y8-2|PARP16;ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2904357910156	2	501.288628	1000.5627	0.66254	0.00033212	3.021	0.0015144	3.6835	0.0018465	501.2899933789471	88.245	1.3927	88.263	87.909	89.302	0.018555					71	32	4	0	0	0	1.1329	1	11065	11065		27.882	3.3631	1	968330			73680	5255	51496	51580	80836	80836					0.06244455373735036
SLLGPILSCV	10	Unmodified	_SLLGPILSCV_					0	0	0		nc|ENSG00000138617|Q8N5Y8-2|PARP16;ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.0271	1	10423	10423		42.396	3.1433	1	10557000			73681	5255	51496	51580	80837	80837					0.06244455373735036
SLLGPILSCV	10	Unmodified	_SLLGPILSCV_					0	0	0		nc|ENSG00000138617|Q8N5Y8-2|PARP16;ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	nc|ENSG00000138617|Q8N5Y8-2|PARP16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.290283203125	2	501.288628	1000.5627	-0.20958	-0.00010506	4.0915	0.002051	3.882	0.001946	501.2904390152303	88.357	2.0156	88.219	87.862	89.877	-0.13744					89	47	3	0	0	0	0.71272	1	10731	10731		66.429	15.094	1	1494100			73682	5255	51496	51580	80838	80838					0.06244455373735036
SLLGRPGLSSL	11	Unmodified	_SLLGRPGLSSL_					0	0	0			REV__ENST00000304858.6_1_5:132387738-132387870:+|nuORF	REV__ENST00000304858.6_1_5:132387738-132387870:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3264770507812	2	550.327131	1098.63971	-0.021848	-1.2023E-05	0.9288	0.00051114	0.90695	0.00049912	550.3277998075141	98.945	1.0124	98.945	98.479	99.492	0					46	22	3	0	0	0	1.0292	1	12636	12636		30.318	2.2362	1	260500	+		73683	30107	51497	51581	80839	80839					0.09433389914443069
SLLGTGITSP	10	Unmodified	_SLLGTGITSP_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.768798828125	2	473.266207	944.517862	0.65972	0.00031222	-0.95172	-0.00045042	-0.29201	-0.0001382	473.2652660874316	76.333	0.63786	76.345	76.015	76.653	0.011635					31	15	3	0	0	0	0.03519	1	9285	9285		39.253	3.6345	1	754700			73684	6486	51498	51582	80840	80840					0.04338347832049294
SLLGTGITSP	10	Unmodified	_SLLGTGITSP_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.266207	944.517862	0.061956	2.9322E-05	-0.87567	-0.00041443	-0.81371	-0.0003851	473.26551373532544	76.456	0.44032	76.228	76.003	76.444	-0.22843	-0.14763	0.00012767	NaN	39.253	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244650			73685	6486	51498	51582							0.04338347832049294
SLLGTGITSP	10	Unmodified	_SLLGTGITSP_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.266207	944.517862	0.38122	0.00018042	-1.223	-0.00057882	-0.84181	-0.0003984	473.26591392024153	76.806	0.80004	76.554	76.103	76.903	-0.25162	0.17854	-0.00020111	NaN	39.253	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240880			73686	6486	51498	51582							0.04338347832049294
SLLGVILPE	9	Unmodified	_SLLGVILPE_					0	0	0			REV__ENST00000478979.5_1_16:774909-776367:-|nuORF	REV__ENST00000478979.5_1_16:774909-776367:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.26171875	2	470.789318	939.564084	0.47201	0.00022222	1.738	0.00081823	2.21	0.0010404	470.79249910295226	26.17	0.15895	26.251	26.131	26.29	0.081293					5	3	2	0	0	0	0.024209	1	1258	1258		39.253	0	1	35967	+		73687	33385	51499	51583	80841	80841					0.09188412734135909
SLLHLFHS	8	Unmodified	_SLLHLFHS_					0	0	0		ENST00000556961.1_1_14:92336088-92336244:-|nuORF	ENST00000556961.1_1_14:92336088-92336244:-|nuORF	ENST00000556961.1_1_14:92336088-92336244:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.3155822753906	2	477.263802	952.513051	0.23279	0.0001111	0.80093	0.00038226	1.0337	0.00049336	477.263833259756	65.847	0.6459	65.574	65.229	65.874	-0.27282					27	17	2	0	0	0	0.027866	1	7830	7830		26.796	6.3143	1	250950			73688	16722	51500	51584	80842	80842					0.034895084799586584
SLLHRILLY	9	Unmodified	_SLLHRILLY_					0	0	0		ENST00000356300.8_1_14:24047750-24047927:-|nuORF	ENST00000356300.8_1_14:24047750-24047927:-|nuORF	ENST00000356300.8_1_14:24047750-24047927:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.259521484375	2	564.350409	1126.68626	-0.28724	-0.00016211	-3.7178	-0.0020982	-4.0051	-0.0022603	564.3481425146836	27.442	0.51262	27.2	26.954	27.466	-0.24217					20	11	2	0	0	0	0.024523	1	1492	1492		21.96	0	1	187360			73689	12665	51501	51585	80843	80843					0.12798874536383664
SLLIDGPQV	9	Unmodified	_SLLIDGPQV_					0	0	0		ENST00000465215.1_1_3:101659750-101679293:+|nuORF	ENST00000465215.1_1_3:101659750-101679293:+|nuORF	ENST00000465215.1_1_3:101659750-101679293:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2684020996094	2	471.26875	940.522947	0.073094	3.4447E-05	0.16323	7.6927E-05	0.23633	0.00011137	471.268761887639	66.945	1.3116	66.945	66.519	67.831	0					88	32	5	0	0	0	0.72494	1	8006	8006		44.377	0	1	7614600			73690	14775	51502	51586	80844	80844					0.0503065169467618
SLLIIFLCFIL	11	Unmodified	_SLLIIFLCFIL_					0	0	0		ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.2071228027344	3	432.266294	1293.77705	-0.57703	-0.00024943	3.735	0.0016145	3.1579	0.0013651	432.2678271178161	44.125	0.82585	43.906	43.282	44.108	-0.21938					46	22	3	0	0	0	0.024772	1	4009	4009		6.3209	0	1	218560			73691	3162	51503	51587	80845	80845					0.14191582469629793
SLLIKKVRS	9	Unmodified	_SLLIKKVRS_					0	0	0			REV__ENST00000513321.1_1_4:178231246-178274506:+|nuORF	REV__ENST00000513321.1_1_4:178231246-178274506:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2512817382812	2	522.350409	1042.68626	-0.36467	-0.00019049	0.2586	0.00013508	-0.10608	-5.5409E-05	522.3504766899498	34.967	0.35414	34.78	34.519	34.873	-0.18675					12	8	2	0	0	0	0.024541	1	2613	2613		21.96	7.095	1	88328	+		73692	34152	51504	51588	80846	80846					0.16662874536359595
SLLILSETK	9	Unmodified	_SLLILSETK_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67270088-67280211:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7825622558594	2	502.305332	1002.59611	-1.295	-0.00065047	-4.3272	-0.0021736	-5.6221	-0.002824	502.303065362044	44.389	0.23127	44.244	44.162	44.394	-0.14471					9	6	2	0	0	0	0.024506	1	4225	4225		23.042	0	1	212630			73693	6397	51505	51589	80847	80847					0.09491780417283735
SLLIVAYS	8	Unmodified	_SLLIVAYS_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.2565002441406	2	433.255111	864.49567	0.5502	0.00023838	-0.69107	-0.00029941	-0.14087	-6.1032E-05	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	0.96719	1	13237	13237		42.474	1.9018	1	237570000	+		73694	27437	51506	51590	80848	80848					0.058001681542691585
SLLIVISYG	9	Unmodified	_SLLIVISYG_					0	0	0		nc|ENSG00000184321|Q9H342|OR51J1	nc|ENSG00000184321|Q9H342|OR51J1	nc|ENSG00000184321|Q9H342|OR51J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.77960205078125	2	482.789318	963.564084	-1.0423	-0.00050321	-0.5583	-0.00026954	-1.6006	-0.00077275	482.7889750313125	29.323	1.0808	29.323	28.406	29.487	0					50	26	3	0	0	0	0.024487	1	1776	1776		17.365	0	1	273270			73695	18585	51507	51591	80849	80849					0.08084412734137914
SLLKKSPYP	9	Unmodified	_SLLKKSPYP_					0	0	0			REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF	REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	516.808042	1031.60153	0.27289	0.00014103	-0.61743	-0.00031909	-0.34454	-0.00017806	516.8073837251376	81.866	0.42457	81.672	81.461	81.886	-0.19334					20	9	3	0	0	0	0.023635	1	9871	9871		76.774	7.1465	1	89136	+		73696	23974	51508	51592	80850	80850					0.08699503999741864
SLLKLLKQN	9	Unmodified	_SLLKLLKQN_					0	0	0			REV__ENST00000469796.6_1_X:108887091-108887178:-|nuORF	REV__ENST00000469796.6_1_X:108887091-108887178:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8084106445312	2	528.842416	1055.67028	1.7083	0.00090343	-2.4833	-0.0013133	-0.77498	-0.00040984	528.8409327619516	63.87	0.50049	63.915	63.688	64.189	0.045502					31	13	3	0	0	0	0.02435	1	7394	7394		51.335	3.3759	1	790600	+		73697	33136	51509	51593	80851	80851					0.14467168299461264
SLLKQQQED	9	Unmodified	_SLLKQQQED_					0	0	0		ENSG00000044459|ENST00000380647|CNTLN;nc|ENSG00000044459|Q9NXG0|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	ENSG00000044459|ENST00000380647|CNTLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8021850585938	2	544.782753	1087.55095	-0.29333	-0.0001598	0.17564	9.5684E-05	-0.1177	-6.4119E-05	544.7837086819357	57.538	0.80579	57.363	56.803	57.608	-0.1749					32	21	2	0	0	0	0.024477	1	6370	6370		35.618	7.736	1	717880			73698	1092	51510	51594	80852	80852					0.010679298841068885
SLLLARKKG	9	Unmodified	_SLLLARKKG_					0	0	0			REV__ENSG00000131944|ENST00000588258|FAAP24	REV__ENSG00000131944|ENST00000588258|FAAP24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.3294372558594	2	493.329476	984.6444	2.0787	0.0010255	-2.5907	-0.0012781	-0.51199	-0.00025258	493.3281727732496	24.316	1.0079	24.136	23.671	24.678	-0.18089					63	22	4	0	0	0	0.90698	1	1049	1049		31.955	0	1	4478600	+		73699	23246	51511	51595	80853	80853					0.1514631884784876
SLLLEGEQL	9	Unmodified	_SLLLEGEQL_					0	0	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2799072265625	2	501.279315	1000.54408	-0.16774	-8.4083E-05	0.44793	0.00022454	0.28019	0.00014045	501.27935038318776	90.564	0.87534	90.547	90.195	91.07	-0.016716					50	20	4	0	0	0	0.45795	1	11424	11424		62.107	0	1	1424000	+		73700	22567	51512	51596	80854	80854					0.04382617003534506
SLLLERPSP	9	Unmodified	_SLLLERPSP_					0	0	0		nc|ENSG00000230246|P0DKV0-2|SPATA31C1;nc|ENSG00000230246|P0DKV0|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2897033691406	2	506.295299	1010.57605	-0.041007	-2.0762E-05	-1.7621	-0.00089214	-1.8031	-0.0009129	506.29421918309123	43.789	0.50745	43.82	43.522	44.029	0.030823					22	13	2	0	0	0	0.024292	1	4051	4051		32.812	0	1	279200			73701	18745	51513	51597	80855	80855					0.07118029477328491
SLLLHPDL	8	Unmodified	_SLLLHPDL_					0	0	0			REV__ENST00000395496.5_1_6:32136507-32136903:-|nuORF	REV__ENST00000395496.5_1_6:32136507-32136903:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7455749511719	2	454.26601	906.517468	-0.082968	-3.7689E-05	-1.5913	-0.00072289	-1.6743	-0.00076058	454.2651608747226	53.694	0.8398	53.79	53.518	54.358	0.095669					29	23	2	0	0	0	0.027866	1	5780	5780		47.916	0	1	323070	+		73702	31702	51514	51598	80856	80856					0.06046972902856851
SLLLHYNSD	9	Unmodified	_SLLLHYNSD_					0	0	0			REV__ENSG00000182890|ENST00000328078|GLUD2	REV__ENSG00000182890|ENST00000328078|GLUD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2794799804688	2	531.266739	1060.51892	-0.42811	-0.00022744	-3.5552	-0.0018888	-3.9833	-0.0021162	531.2638993789327	55.973	0.29026	55.757	55.668	55.958	-0.21607					10	7	2	0	0	0	0.024436	1	6046	6046		16.473	0	1	120220	+		73703	27516	51515	51599	80857	80857					-0.008914377990549838
SLLLIQLPL	9	Unmodified	_SLLLIQLPL_					0	0	0			REV__ENST00000595638.1_1_19:51485457-51485655:-|nuORF	REV__ENST00000595638.1_1_19:51485457-51485655:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.76068115234375	2	505.336436	1008.65832	-0.00019587	-9.8982E-08	-2.9276	-0.0014794	-2.9278	-0.0014795	505.33473114284806	107.36	0.48228	107.23	106.84	107.32	-0.12381					23	16	2	0	0	0	0.024506	1	13332	13332		23.042	0	1	132880	+		73704	26312	51516	51600	80858	80858					0.15433551556270686
SLLLLTARA	9	Unmodified	_SLLLLTARA_					0	0	0		ENST00000452761.1_1_2:110745136-110745940:-|nuORF;ENST00000452245.1_1_2:111141333-111141522:+|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.29547119140625	2	479.30821	956.601866	0.15389	7.376E-05	-0.41994	-0.00020128	-0.26605	-0.00012752	479.30786643879196	24.74	0.58713	24.525	24.177	24.764	-0.2151					30	13	3	0	0	0	0.023817	1	1067	1067		42.396	15.703	1	414720			73705	14539	51517	51601	80859	80859					0.12182923719603878
SLLLPHVQTL	10	Unmodified	_SLLLPHVQTL_					0	0	0			REV__ENST00000278071.6_1_10:106073096-106073477:-|nuORF	REV__ENST00000278071.6_1_10:106073096-106073477:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.785400390625	2	560.839874	1119.66519	0.83103	0.00046607	-1.6688	-0.00093591	-0.83774	-0.00046984	560.8389924717493	67.936	0.49039	67.68	67.497	67.987	-0.25516					17	11	2	0	0	0	0.03519	1	7821	7821		37.812	0	1	304240	+		73706	29862	51518	51602	80860	80860					0.11014864436856442
SLLLRIGEV	9	Unmodified	_SLLLRIGEV_					0	0	0		ENST00000520794.1_1_5:179290450-179293075:-|nuORF;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	ENST00000520794.1_1_5:179290450-179293075:-|nuORF;ENSG00000197226|ENST00000355235|TBC1D9B	ENSG00000197226|ENST00000355235|TBC1D9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3130798339844	2	500.313492	998.612431	0.31324	0.00015672	-0.82928	-0.0004149	-0.51604	-0.00025818	500.3131305903417	76.175	3.4375	76.187	75.788	79.226	0.011642					264	83	5	0	0	0	0.42604	1	9518	9518		64.207	0.67341	1	55383000			73707	9972;15992	51519	51603	80861	80861					0.11306906374045411
SLLLRPSVL	9	Unmodified	_SLLLRPSVL_					0	0	0			REV__ENSG00000007306|ENST00000401731|CEACAM7	REV__ENSG00000007306|ENST00000401731|CEACAM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.3238525390625	2	499.32386	996.633166	1.7703	0.00088394	-2.3345	-0.0011657	-0.56427	-0.00028175	499.3226952178435	63.697	1.7933	63.751	63.41	65.203	0.054104					115	48	4	0	0	0	0.39228	1	7385	7385		66.429	2.222	1	32941000	+		73708	19858	51520	51604	80862	80862					0.1347149675369792
SLLLRVRVS	9	Unmodified	_SLLLRVRVS_					0	0	0			REV__nc|ENSG00000180287|Q8N7P1-3|PLD5	REV__nc|ENSG00000180287|Q8N7P1-3|PLD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7566528320312	2	521.840208	1041.66586	0.0011803	6.1595E-07	-0.10659	-5.5622E-05	-0.10541	-5.5006E-05	521.8399288101949	25.648	0.52966	25.478	25.205	25.735	-0.17078					30	12	4	0	0	0	0.024541	1	1267	1267		16.473	0	1	737550	+		73709	27328	51521	51605	80863	80863					0.14669703876552376
SLLLSRPVL	9	Unmodified	_SLLLSRPVL_					0	0	0		nc|ENSG00000064703|Q9UHI6-2|DDX20;ENSG00000064703|ENST00000369702|DDX20	nc|ENSG00000064703|Q9UHI6-2|DDX20	nc|ENSG00000064703|Q9UHI6-2|DDX20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.3236999511719	2	499.32386	996.633166	1.3587	0.00067843	-1.7525	-0.00087507	-0.39382	-0.00019664	499.3229836235811	63.717	1.9239	63.717	63.336	65.26	0					135	52	4	0	0	0	0.33245	1	7488	7488		71.296	2.5089	1	34948000			73710	1281	51522	51606	80864	80864					0.1347149675369792
SLLLSRPVL	9	Unmodified	_SLLLSRPVL_					0	0	0		nc|ENSG00000064703|Q9UHI6-2|DDX20;ENSG00000064703|ENST00000369702|DDX20	nc|ENSG00000064703|Q9UHI6-2|DDX20	nc|ENSG00000064703|Q9UHI6-2|DDX20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.32366943359375	2	499.32386	996.633166	0.030222	1.509E-05	-0.60524	-0.00030221	-0.57502	-0.00028712	499.3235630930788	63.963	1.8449	63.712	63.372	65.217	-0.25141					120	49	4	0	0	0	0.096521	1	7469	7469		111.65	8.8749	1	34182000			73711	1281	51522	51606	80865	80865					0.1347149675369792
SLLLWATL	8	Unmodified	_SLLLWATL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2250671386719	2	458.778754	915.542954	-0.22119	-0.00010148	-4.252	-0.0019507	-4.4732	-0.0020522	458.77672893026033	23.941	0.60092	23.761	23.563	24.164	-0.17989					25	13	3	0	0	0	0.027866	1	979	979		33.516	5.6333	1	261430			73712	2485	51523	51607	80866	80866					0.08180447425286275
SLLLWATL	8	Unmodified	_SLLLWATL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.778754	915.542954	0.11653	5.3459E-05	-4.5501	-0.0020875	-4.4336	-0.002034	458.7765478915111	24.147	0.57331	23.932	23.644	24.218	-0.2151	0.095497	0.0003133	NaN	33.516	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233660			73713	2485	51523	51607							0.08180447425286275
SLLLWATL	8	Unmodified	_SLLLWATL_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	458.778754	915.542954	2.0221	0.00092769	-6.3594	-0.0029176	-4.3374	-0.0019899	458.77569376950686	23.996	0.61506	23.815	23.582	24.198	-0.18089	-0.020584	-0.0013469	NaN	33.516	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235540			73714	2485	51523	51607							0.08180447425286275
SLLMSAVPAL	10	Unmodified	_SLLMSAVPAL_					0	0	0			REV__ENST00000425888.1_1_3:196294085-196295387:-|nuORF	REV__ENST00000425888.1_1_3:196294085-196295387:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8027038574219	2	501.288628	1000.5627	-0.2676	-0.00013414	-0.79611	-0.00039908	-1.0637	-0.00053322	501.28769626503976	57.297	0.45188	57.392	57.014	57.465	0.09531					18	11	2	0	0	0	0.03519	1	6342	6342		51.335	22.186	1	156190	+		73715	32262	51524	51608	80867	80867					0.06244455373735036
SLLNEIESI	9	Unmodified	_SLLNEIESI_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.27728271484375	2	509.276772	1016.53899	0.60104	0.00030609	-0.018084	-9.2096E-06	0.58295	0.00029688	509.2767575152253	88.816	0.51096	88.788	88.433	88.944	-0.027664					25	11	3	0	0	0	0.062622	1	11161	11161		124.08	24.705	1	430820			73716	7933	51525	51609	80868	80868					0.031383131409029374
SLLPAIVEL	9	Unmodified	_SLLPAIVEL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7972717285156	2	477.797143	953.579734	0.40374	0.0001929	-0.32063	-0.0001532	0.083106	3.9708E-05	477.7969033037499	96.363	2.7985	96.363	95.476	98.275	0					152	64	4	0	0	0	0.13494	4	12291	12267;12279;12291;12314		102.77	21.951	1	7655300			73717	2693	51526	51610	80869;80870;80871;80872	80871					0.10108699251179587
SLLPAIVEL	9	Unmodified	_SLLPAIVEL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7974853515625	2	477.797143	953.579734	0.94443	0.00045125	-0.85542	-0.00040872	0.08901	4.2529E-05	477.79663613466545	96.284	2.5404	96.29	95.477	98.017	0.0065002					149	58	5	0	0	0	0.20967	4	12237	12237;12249;12261;12274		87.754	23.947	1	7638300			73718	2693	51526	51610	80873;80874;80875;80876	80873					0.10108699251179587
SLLPAIVEL	9	Unmodified	_SLLPAIVEL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.79736328125	2	477.797143	953.579734	1.1591	0.00055384	-1.1256	-0.0005378	0.033575	1.6042E-05	477.7965293272773	96.337	2.6643	96.339	95.395	98.06	0.0020676					149	61	4	0	0	0	0.15029	3	12208	12197;12208;12220		99.375	34.403	1	9914000			73719	2693	51526	51610	80877;80878;80879	80878					0.10108699251179587
SLLPAIVEL	9	Unmodified	_SLLPAIVEL_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	477.797143	953.579734	0.72341	0.00034564	0.043974	2.1011E-05	0.76739	0.00036665	477.7967825661794	96.163	2.6793	96.026	94.335	97.014	-0.1367	-0.17478	0.00065892	NaN	102.77	78	61	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571020			73720	2693	51526	51610							0.10108699251179587
SLLPALLLW	9	Unmodified	_SLLPALLLW_					0	0	0			REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.8424682617188	2	513.323328	1024.6321	0.16379	8.4079E-05	3.8173	0.0019595	3.9811	0.0020436	513.3266296699267	23.592	0.28816	23.39	23.279	23.567	-0.20193					9	6	2	0	0	0	0.024487	1	947	947		31.955	7.7521	1	27569	+		73721	20790	51527	51611	80880	80880					0.12077282384802857
SLLPALLLW	9	Unmodified	_SLLPALLLW_					0	0	0			REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.323328	1024.6321	-0.64958	-0.00033344	7.0743	0.0036314	6.4247	0.003298	513.3269235002618	23.419	0.57079	23.419	23.123	23.694	0	0.036267	0.00035518	NaN	24.203	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43701	+		73722	20790	51527	51611							0.12077282384802857
SLLPALLLW	9	Unmodified	_SLLPALLLW_					0	0	0			REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.323328	1024.6321	-0.62416	-0.0003204	6.7918	0.0034864	6.1676	0.003166	513.3265636078163	23.414	0.44508	23.353	23.069	23.514	-0.060862	-0.03	6.5125E-05	NaN	24.203	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40027	+		73723	20790	51527	51611							0.12077282384802857
SLLPALLLW	9	Unmodified	_SLLPALLLW_					0	0	0			REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	REV__ENST00000585521.2_1_17:76374779-76411070:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.323328	1024.6321	-0.76705	-0.00039374	7.3515	0.0037737	6.5844	0.00338	513.3270088710547	23.294	0.40896	23.37	23.195	23.604	0.076241	-0.012863	0.00063974	NaN	24.203	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51019	+		73724	20790	51527	51611							0.12077282384802857
SLLPDTAFPF	10	Unmodified	_SLLPDTAFPF_					0	0	0		ENST00000470100.1_1_2:96076425-96076527:+|nuORF	ENST00000470100.1_1_2:96076425-96076527:+|nuORF	ENST00000470100.1_1_2:96076425-96076527:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.2167358398438	2	554.289682	1106.56481	-0.12105	-6.7095E-05	-3.6326	-0.0020135	-3.7536	-0.0020806	554.2878377425268	69.845	0.58095	69.623	69.348	69.929	-0.22245					27	13	3	0	0	0	0.03519	1	8149	8149		19.997	2.6318	1	186600			73725	14925	51528	51612	80881	80881					0.015792073831562448
SLLPFLKAV	9	Unmodified	_SLLPFLKAV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.31536865234375	2	494.315503	986.616454	-0.19627	-9.702E-05	0.16171	7.9935E-05	-0.034563	-1.7085E-05	494.3154704891669	80.835	2.206	80.835	80.373	82.579	0					116	53	4	0	0	0	0.14024	4	10068	10029;10041;10054;10068		101.6	37.393	1	3335800			73726	3459	51529	51613	80882;80883;80884;80885	80885					0.12260995867745805
SLLPFLKAV	9	Unmodified	_SLLPFLKAV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.315185546875	2	494.315503	986.616454	-0.76775	-0.00037951	0.74297	0.00036726	-0.024777	-1.2248E-05	494.3157306137402	80.927	1.9098	80.776	80.428	82.338	-0.15169					124	46	4	0	0	0	0.19099	5	10024	10014;10024;10038;10050;10063		90.37	29.398	1	3473800			73727	3459	51529	51613	80886;80887;80888;80889;80890	80887					0.12260995867745805
SLLPFLKAV	9	Unmodified	_SLLPFLKAV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3147888183594	2	494.315503	986.616454	-0.8692	-0.00042966	0.82804	0.00040931	-0.041164	-2.0348E-05	494.31579505757173	80.772	1.7843	80.796	80.403	82.187	0.023911					126	43	4	0	0	0	0.14024	5	9959	9948;9959;9972;9985;9998		101.6	41.307	1	3163500			73728	3459	51529	51613	80891;80892;80893;80894;80895	80892					0.12260995867745805
SLLPFLKAV	9	Unmodified	_SLLPFLKAV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	494.315503	986.616454	-0.25248	-0.0001248	0.089969	4.4473E-05	-0.16251	-8.0331E-05	494.31551950624646	80.712	0.72427	80.474	80.164	80.889	-0.23784	-0.16152	-0.00029292	NaN	101.6	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647120			73729	3459	51529	51613							0.12260995867745805
SLLPFLKAV	9	Unmodified	_SLLPFLKAV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.315503	986.616454	0.34627	0.00017117	-0.69219	-0.00034216	-0.34592	-0.000171	494.3151070582477	80.665	0.69599	80.459	80.173	80.869	-0.20633	-0.17726	-0.0010662	NaN	101.6	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439690			73730	3459	51529	51613							0.12260995867745805
SLLPFLKAV	9	Unmodified	_SLLPFLKAV_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.315503	986.616454	-0.069667	-3.4437E-05	-0.21325	-0.00010541	-0.28292	-0.00013985	494.3152955281977	80.622	0.65551	80.476	80.199	80.855	-0.146	-0.16026	-0.00059269	NaN	101.6	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433900			73731	3459	51529	51613							0.12260995867745805
SLLPKENI	8	Unmodified	_SLLPKENI_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2586975097656	2	457.271293	912.528032	0.33029	0.00015103	-1.4565	-0.00066599	-1.1262	-0.00051496	457.27134764187525	61.113	0.18091	61.184	61.095	61.276	0.071125					6	4	2	0	0	0	0.027866	1	6982	6982		29.15	0	1	83142			73732	10179	51530	51614	80896	80896					0.06826955557278325
SLLPLDFLY	9	Unmodified	_SLLPLDFLY_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3014526367188	2	540.802426	1079.5903	-0.72246	-0.00039071	-2.2724	-0.0012289	-2.9948	-0.0016196	540.8026227011625	101.88	1.2406	101.88	101.28	102.53	0					87	27	4	0	0	0	0.18915	1	13044	13044		90.777	21.149	1	2719300			73733	1432	51531	51615	80897	80897					0.053686819056110835
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|2|fusion;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.8262329101562	2	547.826432	1093.63831	-0.55629	-0.00030475	0.55962	0.00030658	0.0033344	1.8267E-06	547.8266124121211	94.896	2.7252	94.896	94.244	96.969	0					183	63	5	0	0	0	0.00049395	14	12046	12034;12046;12057;12069;12081;12093;12105;12117;12129;12142;12154;12167;12178;12198		153.04	83.408	1	3541800			73734	2309	51532	51616	80898;80899;80900;80901;80902;80903;80904;80905;80906;80907;80908;80909;80910;80911	80899					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|2|fusion;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.82666015625	2	547.826432	1093.63831	-0.4664	-0.00025551	0.47243	0.00025881	0.0060213	3.2986E-06	547.8265717576062	94.849	2.807	94.852	94.115	96.922	0.0033798					173	65	5	0	0	0	4.1234E-13	12	12027	11993;12005;12015;12027;12039;12051;12063;12075;12108;12120;12132;12145		221.33	133.63	1	3630200			73735	2309	51532	51616	80912;80913;80914;80915;80916;80917;80918;80919;80920;80921;80922;80923	80915					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|2|fusion;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8267211914062	2	547.826432	1093.63831	-0.57643	-0.00031579	0.58559	0.0003208	0.0091588	5.0174E-06	547.8266268717281	94.838	2.7342	94.842	94.284	97.018	0.0041199					170	63	5	0	0	0	4.0383E-07	14	11974	11953;11964;11974;11986;11998;12010;12022;12034;12047;12060;12086;12096;12109;12120		180.93	90.325	1	3341700			73736	2309	51532	51616	80924;80925;80926;80927;80928;80929;80930;80931;80932;80933;80934;80935;80936;80937	80926					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|2|fusion;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.8265991210938	2	547.826432	1093.63831	-0.54373	-0.00029787	0.80054	0.00043856	0.25681	0.00014069	547.826651353702	94.858	2.3384	94.72	94.051	96.389	-0.13779					139	54	4	0	0	0	3.0347E-05	10	11674	11651;11662;11674;11686;11697;11711;11721;11735;11771;11783		171.38	89.144	1	1371400			73737	2309	51532	51616	80938;80939;80940;80941;80942;80943;80944;80945;80946;80947	80940					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|2|fusion;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.8265380859375	2	547.826432	1093.63831	0.38635	0.00021165	-0.1216	-6.6615E-05	0.26475	0.00014504	547.8261366467889	94.888	2.1298	94.766	94.058	96.188	-0.12229					136	49	4	0	0	0	0.017859	11	11687	11664;11675;11687;11699;11710;11723;11735;11748;11772;11784;11797		131.03	81.495	1	1402500			73738	2309	51532	51616	80948;80949;80950;80951;80952;80953;80954;80955;80956;80957;80958	80950					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B-ZCCHC7|2|fusion;SEC23B-ZCCHC7|1|fusion	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.8262939453125	2	547.826432	1093.63831	-0.50716	-0.00027784	0.73057	0.00040023	0.22341	0.00012239	547.8265806399944	94.926	2.3019	94.774	94.082	96.384	-0.15186					141	53	4	0	0	0	0.060247	12	11662	11650;11662;11673;11685;11696;11708;11720;11733;11745;11756;11769;11780		118.74	60.772	1	1327800			73739	2309	51532	51616	80959;80960;80961;80962;80963;80964;80965;80966;80967;80968;80969;80970	80960					0.0952375582564855
SLLPPGQSAAD	11	Unmodified	_SLLPPGQSAAD_					0	0	0		ENST00000361906.7_1_22:38615520-38615748:-|nuORF	ENST00000361906.7_1_22:38615520-38615748:-|nuORF	ENST00000361906.7_1_22:38615520-38615748:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.302490234375	2	528.272021	1054.52949	0.72964	0.00038545	1.9977	0.0010553	2.7273	0.0014408	528.2739392701259	98.186	0.4533	98.184	97.855	98.309	-0.0020752					17	10	3	0	0	0	0.024795	1	12463	12463		42.864	16.068	1	31671			73740	12808	51533	51617	80971	80971					0.0044054485538254085
SLLPPTALVGL	11	Unmodified	_SLLPPTALVGL_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;ENST00000555682.1_1_14:39560581-39561747:-|nuORF	ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8035888671875	2	540.8368	1079.65905	-0.72993	-0.00039477	0.71447	0.00038641	-0.015455	-8.3588E-06	540.8370992356497	95.734	2.2768	95.734	95.093	97.37	0					118	52	3	0	0	0	0.024785	1	12288	12288		45.972	15.469	1	362570			73741	2261	51534	51618	80972	80972					0.1224034620531711
SLLPRDKS	8	Unmodified	_SLLPRDKS_					0	0	0		nc|ENSG00000124191|Q96NM4-3|TOX2;nc|ENSG00000124191|Q96NM4|TOX2;ENSG00000124191|ENST00000341197|TOX2;nc|ENSG00000124191|Q96NM4-2|TOX2	nc|ENSG00000124191|Q96NM4-3|TOX2	nc|ENSG00000124191|Q96NM4-3|TOX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2785949707031	2	458.266542	914.51853	-0.99609	-0.00045648	-2.387	-0.0010939	-3.3831	-0.0015503	458.26535499100066	44.307	0.57191	44.062	43.79	44.362	-0.2444					20	15	2	0	0	0	0.027866	1	4126	4126		16.473	0	1	216500			73742	4019	51535	51619	80973	80973					0.05785187271760606
SLLPTSPRL	9	Unmodified	_SLLPTSPRL_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2984924316406	2	492.297842	982.581131	-0.40023	-0.00019703	0.38168	0.0001879	-0.018548	-9.1313E-06	492.2979431040793	60.385	1.228	60.385	60.027	61.255	0					104	32	6	0	0	0	0.32811	1	6944	6944		71.877	4.3838	1	7219900			73743	18181	51536	51620	80974	80974					0.08914333339930636
SLLPTSPRL	9	Unmodified	_SLLPTSPRL_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2987365722656	2	492.297842	982.581131	-1.8945	-0.00093263	1.7632	0.00086801	-0.13127	-6.4625E-05	492.29863111906184	60.344	1.2734	60.423	60.049	61.322	0.078884					99	33	4	0	0	0	0.14024	3	6845	6845;6855;6866		101.6	5.4575	1	6758600			73744	18181	51536	51620	80975;80976;80977	80975					0.08914333339930636
SLLPTSPRL	9	Unmodified	_SLLPTSPRL_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.29803466796875	2	492.297842	982.581131	-0.73284	-0.00036078	0.5929	0.00029188	-0.13994	-6.8894E-05	492.29795188876545	60.592	1.2302	60.386	59.903	61.133	-0.20599					58	30	3	0	0	0	0.34489	1	6746	6746		69.628	3.1983	1	1263200			73745	18181	51536	51620	80978	80978					0.08914333339930636
SLLPTSPRL	9	Unmodified	_SLLPTSPRL_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.2986145019531	2	492.297842	982.581131	-0.53196	-0.00026188	1.1454	0.00056388	0.61345	0.000302	492.29770599551057	60.7	1.4677	60.446	59.794	61.262	-0.25373					72	36	4	0	0	0	0.6238	1	6746	6746		51.193	1.1682	1	1395400			73746	18181	51536	51620	80979	80979					0.08914333339930636
SLLPVPSMIN	10	Unmodified	_SLLPVPSMIN_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.791259765625	2	535.79936	1069.58417	-1.0683	-0.0005724	-3.2804	-0.0017577	-4.3488	-0.0023301	535.7974282861126	92.155	1.3684	92.155	91.641	93.009	0					96	32	4	0	0	0	1.0393	1	11675	11675		40.778	0.20554	1	2271900	+		73747	24763	51537	51621	80980	80980					0.05215840402456706
SLLPYLPML	9	Oxidation (M)	_SLLPYLPM(Oxidation (M))L_		SLLPYLPM(1)L		SLLPYLPM(100)L	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.798095703125	2	531.798829	1061.5831	-0.31385	-0.00016691	0.27894	0.00014834	-0.034913	-1.8566E-05	531.7988521002239	99.015	1.2258	99.015	98.562	99.787	0					80	27	4	0	0	0	0.14199	1	12624	12624		101.21	8.0161	1	2668100			73748	9860	51538	51622	80981	80981		406			0.05477626033530214
SLLPYLPML	9	Oxidation (M)	_SLLPYLPM(Oxidation (M))L_		SLLPYLPM(1)L		SLLPYLPM(80)L	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.798583984375	2	531.798829	1061.5831	-0.72033	-0.00038307	1.1283	0.00060004	0.40798	0.00021697	531.7989480358904	101.65	1.9571	101.65	100.7	102.65	0					70	44	3	0	0	0	0.26797	2	13010	13010;13035		79.939	18.146	1	370770			73749	9860	51538	51622	80982;80983	80982		406			0.05477626033530214
SLLPYLPML	9	Oxidation (M)	_SLLPYLPM(Oxidation (M))L_		SLLPYLPM(1)L		SLLPYLPM(140)L	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7984619140625	2	531.798829	1061.5831	-0.1908	-0.00010147	0.13003	6.9152E-05	-0.060768	-3.2316E-05	531.7987709344908	98.974	1.2634	98.984	98.48	99.743	0.010231					82	28	4	0	0	0	0.026982	1	12583	12583		143.97	38.706	1	3036200			73750	9860	51538	51622	80984	80984		406			0.05477626033530214
SLLPYLPML	9	Oxidation (M)	_SLLPYLPM(Oxidation (M))L_		SLLPYLPM(1)L		SLLPYLPM(110)L	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7984619140625	2	531.798829	1061.5831	0.2082	0.00011072	-0.38428	-0.00020436	-0.17608	-9.3639E-05	531.7985031464159	99.062	1.2624	99.058	98.596	99.858	-0.0038834					82	28	4	0	0	0	0.088511	1	12567	12567		114.59	17.113	1	3158900			73751	9860	51538	51622	80985	80985		406			0.05477626033530214
SLLPYLPML	9	Oxidation (M)	_SLLPYLPM(Oxidation (M))L_		SLLPYLPM(1)L		SLLPYLPM(89)L	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7988891601562	2	531.798829	1061.5831	-0.0019844	-1.0553E-06	0.50944	0.00027092	0.50746	0.00026987	531.7985437614299	101.61	1.993	101.61	100.76	102.76	-0.0054398					65	45	3	0	0	0	0.20304	2	12937	12937;12960		88.643	14.668	1	367810			73752	9860	51538	51622	80986;80987	80986		406			0.05477626033530214
SLLPYLPML	9	Oxidation (M)	_SLLPYLPM(Oxidation (M))L_		SLLPYLPM(1)L		SLLPYLPM(68)L	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.7976684570312	2	531.798829	1061.5831	0.51534	0.00027406	-0.36078	-0.00019186	0.15456	8.2195E-05	531.7984998746879	98.893	1.2238	98.757	98.411	99.635	-0.13625					47	26	3	0	0	0	0.36105	1	12250	12250		68.485	9.7027	1	218520			73753	9860	51538	51622	80988	80988		406			0.05477626033530214
SLLQALNEV	9	Unmodified	_SLLQALNEV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.77960205078125	2	493.779482	985.544411	-0.16024	-7.9125E-05	-0.094223	-4.6525E-05	-0.25447	-0.00012565	493.7793247920102	81.484	0.69215	81.484	81.138	81.83	0					51	16	4	0	0	0	0.079716	2	10145	10145;10156		117.81	7.6912	1	1704900			73754	9952	51539	51623	80989;80990	80989					0.051060367233731085
SLLQALNEV	9	Unmodified	_SLLQALNEV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7792663574219	2	493.779482	985.544411	-0.52543	-0.00025945	0.31263	0.00015437	-0.2128	-0.00010508	493.77951160479387	81.623	1.0013	81.492	80.82	81.821	-0.13075					47	24	3	0	0	0	0.038547	2	10139	10128;10139		134.77	16.074	1	1830700			73755	9952	51539	51623	80991;80992	80992					0.051060367233731085
SLLQALNEV	9	Unmodified	_SLLQALNEV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7794189453125	2	493.779482	985.544411	-0.66685	-0.00032928	0.45093	0.00022266	-0.21592	-0.00010662	493.7795942280627	81.42	0.69066	81.444	81.167	81.857	0.023911					45	16	4	0	0	0	0.048057	3	10069	10058;10069;10082		129.42	32.698	1	1738600			73756	9952	51539	51623	80993;80994;80995	80994					0.051060367233731085
SLLQALNEV	9	Unmodified	_SLLQALNEV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.779482	985.544411	-0.056468	-2.7883E-05	-0.022843	-1.128E-05	-0.079311	-3.9162E-05	493.77939362502764	81.576	0.71015	81.347	80.898	81.608	-0.2289	-0.046173	-4.8326E-05	NaN	134.77	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580370			73757	9952	51539	51623							0.051060367233731085
SLLQALNEV	9	Unmodified	_SLLQALNEV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.779482	985.544411	0.28401	0.00014024	-0.4696	-0.00023188	-0.18559	-9.1639E-05	493.7791855306523	81.471	0.62563	81.278	81.009	81.634	-0.19334	-0.11541	-0.00048953	NaN	134.77	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628940			73758	9952	51539	51623							0.051060367233731085
SLLQALNEV	9	Unmodified	_SLLQALNEV_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.779482	985.544411	-0.45109	-0.00022274	0.49724	0.00024553	0.046143	2.2785E-05	493.77949569949	81.455	0.75612	81.313	80.9	81.656	-0.14248	-0.0803	0.00046528	NaN	134.77	45	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649480			73759	9952	51539	51623							0.051060367233731085
SLLQEKPGEG	10	Unmodified	_SLLQEKPGEG_					0	0	0			REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	REV__ENST00000547703.5_1_12:56552185-56553570:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7953491210938	2	529.279846	1056.54514	-0.5809	-0.00030746	1.9183	0.0010153	1.3374	0.00070787	529.2814651024084	61.793	1.9394	61.856	61.124	63.063	0.063488					96	50	4	0	0	0	0.03519	1	7266	7266		47.657	8.4045	1	3839800	+		73760	34846	51540	51624	80996	80996					0.019128313724195323
SLLQGSPHL	9	Unmodified	_SLLQGSPHL_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2667541503906	2	476.266542	950.51853	0.902	0.00042959	-1.0032	-0.00047779	-0.10119	-4.8195E-05	476.2659430728547	54.67	0.56108	54.464	54.197	54.758	-0.20613					44	14	4	0	0	0	0.043667	1	5815	5815		131.03	54.257	1	1934800			73761	8312	51541	51625	80997	80997					0.04129187271757928
SLLQGSPHL	9	Unmodified	_SLLQGSPHL_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.266542	950.51853	0.27091	0.00012903	0.24957	0.00011886	0.52049	0.00024789	476.26645524394286	54.573	0.5475	54.573	54.321	54.869	0	0.074384	0.00036766	NaN	131.03	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2084000			73762	8312	51541	51625							0.04129187271757928
SLLQGSPHL	9	Unmodified	_SLLQGSPHL_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.266542	950.51853	0.36051	0.0001717	0.4012	0.00019108	0.76171	0.00036278	476.2665094725386	54.674	0.59087	54.523	54.266	54.857	-0.15036	0.024464	0.00051209	NaN	131.03	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2083800			73763	8312	51541	51625							0.04129187271757928
SLLQGSPHL	9	Unmodified	_SLLQGSPHL_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.266542	950.51853	0.91943	0.00043789	-0.34908	-0.00016626	0.57034	0.00027164	476.26618578494157	54.339	0.61864	54.437	54.15	54.769	0.098015	-0.061675	-0.00020258	NaN	131.03	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2514100			73764	8312	51541	51625							0.04129187271757928
SLLQGSPHL	9	Unmodified	_SLLQGSPHL_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	476.266542	950.51853	-0.043479	-2.0708E-05	-0.20906	-9.9568E-05	-0.25254	-0.00012028	476.26633739824905	54.727	0.64552	54.496	54.246	54.891	-0.23087	-0.0025406	-6.9203E-05	NaN	131.03	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2099100			73765	8312	51541	51625							0.04129187271757928
SLLQKLLL	8	Unmodified	_SLLQKLLL_					0	0	0		nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.31494140625	2	464.315503	926.616454	-0.20678	-9.6013E-05	0.13566	6.2987E-05	-0.071129	-3.3026E-05	464.3154223350025	47.686	0.83657	47.589	47.349	48.186	-0.097553					56	22	3	0	0	0	0.42327	1	4704	4704		94.006	0	1	3038000			73766	6490	51542	51626	80998	80998					0.15020995867757847
SLLQKLLL	8	Unmodified	_SLLQKLLL_					0	0	0		nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.314697265625	2	464.315503	926.616454	-0.45647	-0.00021195	0.22829	0.000106	-0.22818	-0.00010595	464.3154610020975	47.99	0.87106	47.714	47.421	48.292	-0.27598					61	23	4	0	0	0	0.2822	1	4710	4710		119.56	0	1	3053800			73767	6490	51542	51626	80999	80999					0.15020995867757847
SLLQKLLL	8	Unmodified	_SLLQKLLL_					0	0	0		nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	464.315503	926.616454	0.14422	6.6962E-05	-0.30114	-0.00013982	-0.15692	-7.2862E-05	464.31518869484523	47.779	0.83863	47.592	47.355	48.193	-0.18684	-0.039663	-0.00031963	NaN	119.56	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2969300			73768	6490	51542	51626							0.15020995867757847
SLLQQAAGLL	10	Unmodified	_SLLQQAAGLL_					0	0	0			REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.8184509277344	2	507.303124	1012.5917	0.2522	0.00012794	-1.7744	-0.00090014	-1.5222	-0.0007722	507.30243178799645	68.47	0.35976	68.227	68.11	68.47	-0.24278					11	8	2	0	0	0	0.03519	1	7937	7937		58.782	0	1	83715	+		73769	21476	51543	51627	81000	81000					0.08590315994376851
SLLQRLNP	8	Unmodified	_SLLQRLNP_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2927551269531	2	470.782359	939.550165	0.22011	0.00010362	-0.58294	-0.00027444	-0.36283	-0.00017081	470.7819375102248	49.851	0.79683	49.851	49.544	50.341	0					35	22	3	0	0	0	0.027866	1	5216	5216		51.335	0	1	1147400	+		73770	23353	51544	51628	81001	81001					0.0779718002570462
SLLQRTAR	8	Unmodified	_SLLQRTAR_					0	0	0			REV__ENSG00000021762|ENST00000263650|OSBPL5	REV__ENSG00000021762|ENST00000263650|OSBPL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.75604248046875	2	472.785433	943.556313	0.62427	0.00029515	2.3158	0.0010949	2.94	0.00139	472.78604142826487	42.769	0.39834	42.769	42.497	42.895	0					13	10	2	0	0	0	0.027866	1	3943	3943		23.042	0	1	119170	+		73771	19997	51545	51629	81002	81002					0.08227698257235261
SLLQSVTGNP	10	Unmodified	_SLLQSVTGNP_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.327880859375	2	508.274564	1014.53457	-0.69108	-0.00035126	1.6576	0.00084253	0.96655	0.00049127	508.2744927456103	33.388	0.49427	33.395	33.154	33.649	0.0066261					25	13	3	0	0	0	0.03519	1	2421	2421		52.937	15.778	1	160280			73772	7039	51546	51630	81003	81003					0.027888487180121047
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.8208618164062	2	532.82115	1063.62775	-0.46776	-0.00024923	0.03029	1.6139E-05	-0.43747	-0.00023309	532.821172643997	69.672	1.0414	69.672	69.016	70.058	0					96	26	6	0	0	0	0.01896	5	8404	8382;8392;8404;8416;8434		150.36	59.992	1	10223000			73773	2196	51547	51631	81004;81005;81006;81007;81008	81006					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.8209838867188	2	532.82115	1063.62775	0.29622	0.00015783	-0.82916	-0.00044179	-0.53293	-0.00028396	532.8207260943067	69.991	0.9043	69.698	69.166	70.07	-0.29292					82	22	6	0	0	0	0.013337	6	8411	8391;8399;8411;8423;8435;8449		176.44	54.269	1	10569000			73774	2196	51547	51631	81009;81010;81011;81012;81013;81014	81011					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.8212280273438	2	532.82115	1063.62775	-0.65696	-0.00035004	0.28423	0.00015144	-0.37273	-0.0001986	532.8212908868596	69.798	0.71043	69.81	69.424	70.134	0.012421					55	17	4	0	0	0	0.013719	5	8339	8316;8327;8339;8351;8363		168.26	61.251	1	11799000			73775	2196	51547	51631	81015;81016;81017;81018;81019	81017					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.8212890625	2	532.82115	1063.62775	-0.5703	-0.00030387	-1.6329	-0.00087002	-2.2032	-0.0011739	532.8197258810294	69.954	0.71198	69.687	69.368	70.08	-0.26725					53	16	4	0	0	0	0.087669	4	8120	8111;8120;8132;8145		114.89	45.267	1	3556400			73776	2196	51547	51631	81020;81021;81022;81023	81021					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.8207397460938	2	532.82115	1063.62775	-0.40924	-0.00021805	-1.4852	-0.00079136	-1.8945	-0.0010094	532.8197459741918	69.839	0.82713	69.588	69.276	70.103	-0.25063					59	19	5	0	0	0	0.034407	4	8122	8111;8122;8134;8147		138.06	36.462	1	4156600			73777	2196	51547	51631	81024;81025;81026;81027	81025					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.8214721679688	2	532.82115	1063.62775	-0.22198	-0.00011828	-1.6252	-0.00086592	-1.8471	-0.00098419	532.8198107150265	69.836	0.78201	69.613	69.266	70.048	-0.22245					59	18	4	0	0	0	0.087669	4	8105	8095;8105;8117;8130		114.89	29.734	1	4317900			73778	2196	51547	51631	81028;81029;81030;81031	81029					0.09847773171213703
SLLQTNIAL	9	Unmodified	_SLLQTNIAL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.78985595703125	2	486.78985	971.565146	0.36772	0.000179	-0.39138	-0.00019052	-0.023663	-1.1519E-05	486.7895527368742	78.894	0.93061	78.739	78.427	79.357	-0.15591					45	21	3	0	0	0	0.071379	1	9412	9412		120.87	12.781	1	776420			73779	1163	51548	51632	81032	81032					0.07822627103018931
SLLQTNIAL	9	Unmodified	_SLLQTNIAL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.78985	971.565146	-0.34359	-0.00016726	-0.061946	-3.0155E-05	-0.40554	-0.00019741	486.78955882484775	78.888	1.0018	78.888	78.7	79.701	0	0.073445	0.00015372	NaN	120.87	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326920			73780	1163	51548	51632							0.07822627103018931
SLLQTNIAL	9	Unmodified	_SLLQTNIAL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.78985	971.565146	-0.36187	-0.00017616	-0.022856	-1.1126E-05	-0.38473	-0.00018728	486.7896573462422	79.054	0.49773	78.882	78.611	79.109	-0.17226	0.067626	0.00019178	NaN	120.87	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270120			73781	1163	51548	51632							0.07822627103018931
SLLQTNIAL	9	Unmodified	_SLLQTNIAL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	486.78985	971.565146	-0.48847	-0.00023778	-0.25798	-0.00012558	-0.74645	-0.00036336	486.78953124538845	78.877	0.53905	78.896	78.735	79.274	0.018669	0.081375	-3.7131E-05	NaN	120.87	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208740			73782	1163	51548	51632							0.07822627103018931
SLLQTNIAL	9	Unmodified	_SLLQTNIAL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.78985	971.565146	0.22821	0.00011109	-0.18561	-9.0352E-05	0.042604	2.0739E-05	486.78966087210097	79.005	1.0113	78.75	78.427	79.438	-0.25471	-0.064305	3.3324E-05	NaN	120.87	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	808190			73783	1163	51548	51632							0.07822627103018931
SLLQTNIAL	9	Unmodified	_SLLQTNIAL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.78985	971.565146	0.26142	0.00012726	-0.14767	-7.1883E-05	0.11375	5.5375E-05	486.7896412322181	78.964	0.79688	78.732	78.476	79.273	-0.23141	-0.082103	7.0262E-05	NaN	120.87	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659270			73784	1163	51548	51632							0.07822627103018931
SLLRAQSVE	9	Unmodified	_SLLRAQSVE_					0	0	0			REV__ENSG00000136274|ENST00000490531|NACAD	REV__ENSG00000136274|ENST00000490531|NACAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2864990234375	2	501.782556	1001.55056	-0.3627	-0.00018199	0.93885	0.0004711	0.57615	0.0002891	501.78311422641656	45.207	1.2281	45.207	44.758	45.986	0					95	35	4	0	0	0	0.72494	1	4348	4348		44.377	0	1	7121700	+		73785	23645	51549	51633	81033	81033					0.04984554954910436
SLLRCLLLL	9	Unmodified	_SLLRCLLLL_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|2|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|29	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|2|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.300048828125	2	522.335913	1042.65727	-0.59864	-0.00031269	-1.2032	-0.00062849	-1.8019	-0.00094118	522.3349444382169	76.872	0.12312	76.644	76.567	76.691	-0.22843					4	2	2	0	0	0	0.024541	1	9448	9448		17.365	1.7232	1	69488	+		73786	19463	51550	51634	81034	81034					0.13765013915735835
SLLRGRITL	9	Unmodified	_SLLRGRITL_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7090454101562	2	514.832383	1027.65021	-0.57375	-0.00029538	4.3348	0.0022317	3.761	0.0019363	514.8344395480395	29.914	0.63492	29.67	29.4	30.035	-0.24415					36	14	3	0	0	0	0.024541	1	1900	1900		16.473	0	1	613020	+		73787	28441	51551	51635	81035	81035					0.13749417359508698
SLLRIGCGVSP	11	Unmodified	_SLLRIGCGVSP_					0	0	0			REV__ENST00000368339.9_2_1:155657968-155658130:-|nuORF	REV__ENST00000368339.9_2_1:155657968-155658130:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.325439453125	2	551.307884	1100.60121	0.23372	0.00012885	0.7321	0.00040361	0.96582	0.00053247	551.8102319449282	98.867	0.5677	98.863	98.554	99.121	-0.0038834					15	12	2	0	0	0	0.024745	1	12559	12559		20.837	0	1	81402	+		73788	31050	51552	51636	81036	81036					0.05493761008256115
SLLRLFTQ	8	Unmodified	_SLLRLFTQ_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.8118591308594	2	489.292559	976.570566	-0.11499	-5.6265E-05	1.5487	0.00075777	1.4337	0.0007015	489.2952245928861	25.622	0.25263	25.452	25.247	25.499	-0.17078					9	5	3	0	0	0	0.027866	1	1212	1212		27.882	0	1	38712	+		73789	26604	51553	51637	81037	81037					0.0813435068552053
SLLRRQPR	8	Unmodified	_SLLRRQPR_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2987670898438	2	513.319974	1024.6254	-0.31979	-0.00016415	4.0927	0.0021008	3.7729	0.0019367	513.3215008635688	95.641	0.21959	95.49	95.361	95.581	-0.15186					6	4	2	0	0	0	0.027866	1	11776	11776		20.947	0	1	20580	+		73790	20084	51554	51638	81038	81038					0.11406782276776539
SLLRTLLLD	9	Unmodified	_SLLRTLLLD_					0	0	0		nc|ENSG00000077327|O75602-4|SPAG6;nc|ENSG00000077327|O75602-2|SPAG6;nc|ENSG00000077327|O75602-5|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3255615234375	2	522.326599	1042.63865	-0.57374	-0.00029968	0.17822	9.3091E-05	-0.39551	-0.00020659	522.3265290402682	81.779	1.8799	81.805	81.25	83.129	0.025711					121	44	3	0	0	0	0.51687	1	10136	10136		58.23	0.41864	1	956460			73791	1608	51555	51639	81039	81039					0.11903175545535305
SLLRTRVGQG	10	Unmodified	_SLLRTRVGQG_					0	0	0			REV__ENSG00000144229|ENST00000409968|THSD7B	REV__ENSG00000144229|ENST00000409968|THSD7B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2442016601562	2	543.822547	1085.63054	0.13238	7.1993E-05	1.988	0.0010811	2.1204	0.0011531	543.8233800226773	67.296	0.66822	67.048	66.876	67.545	-0.24839					35	15	3	0	0	0	0.03519	1	7775	7775		41.427	8.6142	1	733200	+		73792	24318	51556	51640	81040	81040					0.09115041348741215
SLLSEHSHS	9	Unmodified	_SLLSEHSHS_					0	0	0			REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77178955078125	2	498.740888	995.467223	-0.63954	-0.00031896	-2.2096	-0.001102	-2.8492	-0.001421	498.74079677276217	31.36	0.33219	31.208	31.124	31.456	-0.15231					11	8	2	0	0	0	0.024457	1	2086	2086		21.96	9.753	1	183280	+		73793	28286	51557	51641	81041	81041					-0.03069181492946882
SLLSELQHA	9	Unmodified	_SLLSELQHA_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89726389-89728307:-|nuORF;ENST00000471171.1_1_1:89726389-89727847:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.26885986328125	2	499.269281	996.52401	-0.18622	-9.2974E-05	-0.37942	-0.00018943	-0.56564	-0.00028241	499.26897709925015	63.343	0.7859	63.16	62.788	63.574	-0.18386					44	18	3	0	0	0	0.014918	1	7172	7172		162.25	82.54	1	2269800			73794	6412	51558	51642	81042	81042					0.02560866063561207
SLLSELQHA	9	Unmodified	_SLLSELQHA_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89726389-89728307:-|nuORF;ENST00000471171.1_1_1:89726389-89727847:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.269281	996.52401	-0.077165	-3.8526E-05	-0.49681	-0.00024804	-0.57398	-0.00028657	499.2692224476402	63.31	0.74485	63.059	62.809	63.553	-0.25141	-0.12121	-2.986E-05	NaN	162.25	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1452200			73795	6412	51558	51642							0.02560866063561207
SLLSELQHA	9	Unmodified	_SLLSELQHA_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89726389-89728307:-|nuORF;ENST00000471171.1_1_1:89726389-89727847:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.269281	996.52401	-0.070318	-3.5107E-05	-0.21535	-0.00010752	-0.28567	-0.00014263	499.2690868367074	63.419	0.69057	63.192	62.933	63.624	-0.22773	0.011932	0.00025119	NaN	162.25	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2456400			73796	6412	51558	51642							0.02560866063561207
SLLSELQHA	9	Unmodified	_SLLSELQHA_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;ENST00000481145.1_1_1:89726389-89728307:-|nuORF;ENST00000471171.1_1_1:89726389-89727847:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.269281	996.52401	0.10549	5.2666E-05	-0.36025	-0.00017986	-0.25477	-0.0001272	499.2689420932823	63.525	0.87455	63.267	63	63.875	-0.25824	0.087499	0.0001065	NaN	162.25	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2224400			73797	6412	51558	51642							0.02560866063561207
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.28466796875	2	513.284931	1024.55531	-1.0777	-0.00055317	-0.078622	-4.0355E-05	-1.1563	-0.00059352	513.2849091808774	61.957	2.2093	61.957	61.492	63.701	0					100	61	3	0	0	0	0.014988	5	7172	7172;7195;7207;7219;7230		191.63	74.722	1	60442000			73798	3561	51559	51643	81043;81044;81045;81046;81047	81043					0.04401439097682669
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2850952148438	2	513.284931	1024.55531	-0.47651	-0.00024458	-0.82477	-0.00042334	-1.3013	-0.00066793	513.2845382044381	62.154	1.8336	61.927	61.455	63.289	-0.22663					84	50	3	0	0	0	0.014988	5	7163	7163;7174;7186;7210;7223		195.81	66.131	1	53444000			73799	3561	51559	51643	81048;81049;81050;81051;81052	81048					0.04401439097682669
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.282958984375	2	513.284931	1024.55531	-1.0696	-0.00054901	-0.25016	-0.0001284	-1.3198	-0.00067741	513.2848164183733	61.867	0.80682	61.93	61.466	62.272	0.062767					57	21	3	0	0	0	0.013333	5	7130	7074;7083;7106;7118;7130		176.41	55.79	1	58239000			73800	3561	51559	51643	81053;81054;81055;81056;81057	81057					0.04401439097682669
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.2855224609375	2	513.284931	1024.55531	-0.2341	-0.00012016	0.83171	0.0004269	0.59761	0.00030675	513.28527752229	62.127	0.98989	61.913	61.293	62.283	-0.21375					57	24	3	0	0	0	0.014988	3	6979	6967;6979;6993		161.9	53.811	1	4653100			73801	3561	51559	51643	81058;81059;81060	81059					0.04401439097682669
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2861328125	2	513.284931	1024.55531	-0.89467	-0.00045922	1.4525	0.00074555	0.55784	0.00028633	513.2855382792907	61.989	1.0988	61.811	61.245	62.343	-0.17781					69	27	3	0	0	0	0.016871	3	6950	6950;6960;6972		152.47	53.096	1	3532200			73802	3561	51559	51643	81061;81062;81063	81061					0.04401439097682669
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		ENST00000376664.10_1_1:11735929-11741152:-|nuORF;ENSG00000116670|ENST00000376692|MAD2L2	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	ENST00000376664.10_1_1:11735929-11741152:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.286376953125	2	513.284931	1024.55531	-0.19068	-9.7875E-05	0.89305	0.00045839	0.70237	0.00036051	513.2852546860179	62.174	1.0277	61.917	61.301	62.328	-0.25725					67	25	3	0	0	0	0.021872	3	6962	6962;6971;6984		148.04	65.738	1	3466200			73803	3561	51559	51643	81064;81065;81066	81064					0.04401439097682669
SLLSIVYG	8	Unmodified	_SLLSIVYG_					0	0	0		XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant;ENSG00000047597|ENST00000378616|XK	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	XK|p.C396Afs*13|1|0.51|ENSG00000047597|chrX:37728309-37728309|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.23480224609375	2	426.247286	850.48002	-1.0669	-0.00045474	1.8457	0.00078671	0.77882	0.00033197	426.248144907477	28.133	0.158	28.133	28.074	28.232	0					7	3	3	0	0	0	0.027866	1	1613	1613		20.482	0	1	120030			73804	1105	51560	51644	81067	81067					0.04879881637248218
SLLSLANQP	9	Unmodified	_SLLSLANQP_					0	0	0		ENSG00000107960|ENST00000224950|STN1;ENST00000466828.5_1_10:105642444-105658073:-|nuORF	ENSG00000107960|ENST00000224950|STN1	ENSG00000107960|ENST00000224950|STN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.30010986328125	2	471.766374	941.518196	0.26549	0.00012525	-2.0715	-0.00097724	-1.806	-0.00085199	471.7653241666335	20.538	0.54152	20.37	20.098	20.639	-0.16774					15	10	2	0	0	0	0.024477	1	535	535		27.882	0	1	86783			73805	2871	51561	51645	81068	81068					0.04509767551905952
SLLSNCKK	8	Carbamidomethyl (C)	_SLLSNC(Carbamidomethyl (C))KK_	SLLSNC(1)KK		SLLSNC(69)KK		0	1	0		ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	ENSG00000146476|ENST00000367294|ARMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2603759765625	2	475.260402	948.506251	-1.2561	-0.00059696	1.8079	0.00085924	0.55188	0.00026229	475.2610928050346	40.839	1.2375	40.609	40.196	41.434	-0.23029					86	32	4	0	0	0	0.68164	1	3527	3527		68.787	10.005	1	6508700			73806	5889	51562	51646	81069	81069	76				0.029938275370682277
SLLSPKAKP	9	Unmodified	_SLLSPKAKP_					0	0	0			REV__ENSG00000166819|ENST00000300055|PLIN1	REV__ENSG00000166819|ENST00000300055|PLIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7663879394531	2	470.794935	939.575317	-0.057352	-2.7001E-05	0.59669	0.00028092	0.53934	0.00025392	470.7947415366757	76.793	0.41145	76.564	76.279	76.691	-0.22843					11	9	2	0	0	0	0.024374	1	9397	9397		58.782	29.632	1	63828	+		73807	26059	51563	51647	81070	81070					0.10311234828282068
SLLSPKAKP	9	Unmodified	_SLLSPKAKP_					0	0	0			REV__ENSG00000166819|ENST00000300055|PLIN1	REV__ENSG00000166819|ENST00000300055|PLIN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	470.794935	939.575317	0.45735	0.00021532	-0.2253	-0.00010607	0.23205	0.00010925	470.7946086090557	76.614	0.28755	76.614	76.431	76.719	0	0.024741	-0.00020637	NaN	96.19	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66068	+		73808	26059	51563	51647							0.10311234828282068
SLLSPLVLEV	10	Unmodified	_SLLSPLVLEV_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2589111328125	2	535.328808	1068.64306	-1.1081	-0.00059321	2.2269	0.0011921	1.1188	0.00059893	535.3298535724418	53.733	0.74234	53.597	53.095	53.837	-0.13617					51	21	3	0	0	0	0.03519	1	5604	5604		27.882	4.8398	1	1259900		+	73809	494	51564	51648	81071	81071					0.11148639968428142
SLLSQQPFL	9	Unmodified	_SLLSQQPFL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2566528320312	2	516.78985	1031.56515	0.20835	0.00010767	-0.10805	-5.5842E-05	0.1003	5.1832E-05	516.789521295697	82.022	1.063	81.912	81.359	82.422	-0.11006					53	25	3	0	0	0	0.024025	1	10186	10186		71.877	0	1	889020			73810	9358;5780	51565	51649	81072	81072					0.05062627103052364
SLLSQQPFL	9	Unmodified	_SLLSQQPFL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.25634765625	2	516.78985	1031.56515	0.25994	0.00013433	0.85174	0.00044017	1.1117	0.0005745	516.7894524200095	81.91	1.1479	81.681	81.147	82.295	-0.2289					62	26	4	0	0	0	0.023454	1	9845	9845		52.937	0	1	309850			73811	9358;5780	51565	51649	81073	81073					0.05062627103052364
SLLSQQPFL	9	Unmodified	_SLLSQQPFL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	516.78985	1031.56515	0.2764	0.00014284	-0.10017	-5.1768E-05	0.17623	9.1075E-05	516.789410696304	81.893	1.2338	81.7	81.171	82.405	-0.19334					64	28	4	0	0	0	0.023454	1	9871	9871		82.241	13.454	1	352650			73812	9358;5780	51565	51649	81074	81074					0.05062627103052364
SLLSQQPFL	9	Unmodified	_SLLSQQPFL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.257080078125	2	516.78985	1031.56515	-0.61497	-0.00031781	0.29968	0.00015487	-0.31528	-0.00016293	516.7898158218259	81.887	0.88934	81.745	81.151	82.04	-0.14248					33	20	2	0	0	0	0.023454	1	9843	9843		93.195	0	1	278940			73813	9358;5780	51565	51649	81075	81075					0.05062627103052364
SLLSQQPFL	9	Unmodified	_SLLSQQPFL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000184634|Q93074-3|MED12;nc|ENSG00000144893|Q86YW9-4|MED12L	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.78985	1031.56515	-0.95161	-0.00049178	1.0627	0.00054919	0.11108	5.7403E-05	516.7901127347642	81.78	1.3648	81.805	81.209	82.574	0.025711	0.016778	0.000677	NaN	52.937	81	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836230			73814	9358;5780	51565	51649							0.05062627103052364
SLLSRTVAD	9	Unmodified	_SLLSRTVAD_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7532958984375	2	481.269281	960.52401	-0.48314	-0.00023252	-1.6579	-0.0007979	-2.141	-0.0010304	481.26919745830753	48.411	0.56804	48.258	47.795	48.363	-0.15301					21	16	2	0	0	0	0.024374	1	4870	4870		40.778	1.5253	1	173530			73815	7142	51566	51650	81076	81076					0.04216866063575253
SLLSTPRPL	9	Unmodified	_SLLSTPRPL_					0	0	0		ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.298828125	2	492.297842	982.581131	-0.40023	-0.00019703	0.38168	0.0001879	-0.018548	-9.1313E-06	492.2979431040793	60.385	1.228	60.385	60.027	61.255	0					104	32	6	0	0	0	0.2101	1	6934	6934		87.696	7.9839	1	7219900			73816	16697	51567	51651	81077	81077					0.08914333339930636
SLLSTPRPL	9	Unmodified	_SLLSTPRPL_					0	0	0		ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.29803466796875	2	492.297842	982.581131	-0.73284	-0.00036078	0.5929	0.00029188	-0.13994	-6.8894E-05	492.29795188876545	60.592	1.2302	60.386	59.903	61.133	-0.20599					58	30	3	0	0	0	0.091713	1	6757	6757		113.41	31.107	1	1263200			73817	16697	51567	51651	81078	81078					0.08914333339930636
SLLSVAKSV	9	Unmodified	_SLLSVAKSV_					0	0	0			REV__ENST00000409185.5_1_2:131809219-131809444:-|nuORF	REV__ENST00000409185.5_1_2:131809219-131809444:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2456970214844	2	452.279118	902.543683	0.70323	0.00031805	-0.8647	-0.00039109	-0.16148	-7.3033E-05	452.27864270491557	51.006	0.99348	50.826	50.534	51.527	-0.18071					41	25	2	0	0	0	0.024261	1	5308	5308		37.812	6.2817	1	2048400	+		73818	31951	51568	51652	81079	81079					0.08851242074331367
SLLSVAKSV	9	Unmodified	_SLLSVAKSV_					0	0	0			REV__ENST00000409185.5_1_2:131809219-131809444:-|nuORF	REV__ENST00000409185.5_1_2:131809219-131809444:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	452.279118	902.543683	0.18708	8.4613E-05	-0.31877	-0.00014417	-0.13169	-5.9559E-05	452.2788548040088	51.145	0.64539	50.869	50.589	51.235	-0.27643	0.036155	0.00028675	NaN	37.812	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2319400	+		73819	31951	51568	51652							0.08851242074331367
SLLSVHLL	8	Unmodified	_SLLSVHLL_					0	0	0		ENST00000394906.6_1_17:27207287-27207452:-|nuORF	ENST00000394906.6_1_17:27207287-27207452:-|nuORF	ENST00000394906.6_1_17:27207287-27207452:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2766418457031	2	441.276378	880.538203	-0.23165	-0.00010222	0.52008	0.0002295	0.28843	0.00012728	441.2764654496709	48.785	1.4574	48.632	48.023	49.481	-0.15277					86	40	4	0	0	0	0.88442	1	4973	4973		52.299	0	1	2926600			73820	13500	51569	51653	81080	81080					0.09315563282518724
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.29541015625	2	533.294965	1064.57538	0.23859	0.00012724	-0.49597	-0.0002645	-0.25738	-0.00013726	533.2945069274052	96.345	1.8631	96.352	95.905	97.768	0.0065079					73	42	3	0	0	0	0.01388	3	12235	12235;12252;12270		209.84	0	1	1159600	+		73821	23233	51570	51654	81081;81082;81083	81081					0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.2943115234375	2	533.294965	1064.57538	0.69661	0.0003715	-0.89462	-0.00047709	-0.198	-0.00010559	533.2942504582048	96.454	1.8243	96.457	96.035	97.86	0.0020676					74	41	4	0	0	0	0.013924	2	12247	12230;12247		209.84	0	1	991220	+		73822	23233	51570	51654	81084;81085	81085					0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	533.294965	1064.57538	0.69661	0.0003715	-0.89462	-0.00047709	-0.198	-0.00010559	533.2942504582048	96.454	1.8243	96.457	96.035	97.86	0.0020676	0.2666	-0.00047277	NaN	209.84	74	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	991220	+		73823	23233	51570	51654							0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.294965	1064.57538	0.13442	7.1687E-05	-0.20539	-0.00010953	-0.070967	-3.7847E-05	533.2946446102138	96.177	0.70841	96.04	95.682	96.391	-0.13671	-0.14979	0.00026235	NaN	209.84	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371340	+		73824	23233	51570	51654							0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.294965	1064.57538	0.33049	0.00017625	-0.52871	-0.00028196	-0.19822	-0.00010571	533.2945364069917	96.183	1.0231	96.06	95.728	96.751	-0.12305	-0.12966	-8.2503E-05	NaN	209.84	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607540	+		73825	23233	51570	51654							0.04567190037596447
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.294965	1064.57538	-0.5624	-0.00029993	0.13755	7.3357E-05	-0.42485	-0.00022657	533.2948667892484	96.197	0.89308	96.041	95.751	96.644	-0.15646	-0.14902	0.00062813	NaN	209.84	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408000	+		73826	23233	51570	51654							0.04567190037596447
SLLTFIAVVA	10	Unmodified	_SLLTFIAVVA_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2958984375	2	517.318243	1032.62193	0.50624	0.00026189	2.4512	0.001268	2.9574	0.0015299	517.31923629843	78.348	0.55547	78.117	77.834	78.389	-0.23141					25	12	3	0	0	0	0.03519	1	9379	9379		31.955	0	1	202330			73827	14730	51571	51655	81086	81086					0.10692674659549084
SLLTFIAVVA	10	Unmodified	_SLLTFIAVVA_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.318243	1032.62193	-0.50259	-0.00026	3.2123	0.0016618	2.7098	0.0014018	517.3196374867624	78.368	1.4869	78.368	77.918	79.405	0	0.12205	0.00027427	NaN	17.365	60	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457740			73828	14730	51571	51655							0.10692674659549084
SLLTFIAVVA	10	Unmodified	_SLLTFIAVVA_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.318243	1032.62193	0.3073	0.00015897	2.5124	0.0012997	2.8197	0.0014587	517.3192292367321	78.497	1.2807	78.305	77.975	79.255	-0.1921	0.058648	-0.00044993	NaN	17.365	63	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403340			73829	14730	51571	51655							0.10692674659549084
SLLTFIAVVA	10	Unmodified	_SLLTFIAVVA_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.318243	1032.62193	-0.72913	-0.00037719	3.6089	0.0018669	2.8798	0.0014898	517.3199416205656	78.389	0.99313	78.405	78.155	79.148	0.015915	0.15912	0.00068453	NaN	17.365	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516640			73830	14730	51571	51655							0.10692674659549084
SLLTNIKSD	9	Unmodified	_SLLTNIKSD_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.79449462890625	2	495.776939	989.539325	0.0579	2.8705E-05	-0.012929	-6.4098E-06	0.044971	2.2296E-05	495.777358523326	59.756	0.47971	59.507	59.13	59.61	-0.24842					18	11	2	0	0	0	0.024209	1	6569	6569		66.429	11.653	1	187000	+		73831	28219	51572	51656	81087	81087					0.0441373286076896
SLLTNIKSD	9	Unmodified	_SLLTNIKSD_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.776939	989.539325	1.5128	0.00075002	-7.5894	-0.0037627	-6.0766	-0.0030126	495.77131173892946	59.577	0.51274	59.577	59.333	59.846	0	0.050372	-0.0030653	NaN	66.429	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523220	+		73832	28219	51572	51656							0.0441373286076896
SLLTNIKSD	9	Unmodified	_SLLTNIKSD_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.776939	989.539325	0.2231	0.00011061	-6.792	-0.0033673	-6.5689	-0.0032567	495.77207724685377	59.734	0.58474	59.534	59.281	59.866	-0.20016	0.006606	-0.0022746	NaN	66.429	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548300	+		73833	28219	51572	51656							0.0441373286076896
SLLTNIKSD	9	Unmodified	_SLLTNIKSD_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.776939	989.539325	0.19686	9.7596E-05	-6.6691	-0.0033064	-6.4722	-0.0032088	495.77184793583496	59.452	0.66564	59.537	59.241	59.906	0.085686	0.010152	-0.0021527	NaN	66.429	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462310	+		73834	28219	51572	51656							0.0441373286076896
SLLTNSIYL	9	Unmodified	_SLLTNSIYL_					0	0	0		ENST00000524636.1_1_11:30516841-30557583:-|nuORF;ENST00000525519.1_1_11:30473620-30557628:-|nuORF;nc|ENSG00000066382|Q15777-2|MPPED2;ENSG00000066382|ENST00000358117|MPPED2	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.288818359375	2	512.289682	1022.56481	-0.85218	-0.00043656	0.62422	0.00031978	-0.22795	-0.00011678	512.2899283280782	83.954	0.98146	83.954	83.605	84.587	0					56	22	4	0	0	0	0.22902	1	10499	10499		85.161	10.906	1	662060			73835	1338	51573	51657	81088	81088					0.05443207383189019
SLLTNSIYL	9	Unmodified	_SLLTNSIYL_					0	0	0		ENST00000524636.1_1_11:30516841-30557583:-|nuORF;ENST00000525519.1_1_11:30473620-30557628:-|nuORF;nc|ENSG00000066382|Q15777-2|MPPED2;ENSG00000066382|ENST00000358117|MPPED2	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.289682	1022.56481	0.56415	0.00028901	-1.0552	-0.00054055	-0.49102	-0.00025154	512.7901440830807	83.873	0.42958	83.662	83.6	84.029	-0.21159	-0.11878	-0.0014305	NaN	85.161	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47229			73836	1338	51573	51657							0.05443207383189019
SLLTNSIYL	9	Unmodified	_SLLTNSIYL_					0	0	0		ENST00000524636.1_1_11:30516841-30557583:-|nuORF;ENST00000525519.1_1_11:30473620-30557628:-|nuORF;nc|ENSG00000066382|Q15777-2|MPPED2;ENSG00000066382|ENST00000358117|MPPED2	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	ENST00000524636.1_1_11:30516841-30557583:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.289682	1022.56481	0.26074	0.00013357	-0.70504	-0.00036119	-0.4443	-0.00022761	512.7905070834166	83.865	0.47012	83.726	83.506	83.976	-0.1386	-0.054379	-0.0010718	NaN	85.161	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50860			73837	1338	51573	51657							0.05443207383189019
SLLTRNLF	8	Unmodified	_SLLTRNLF_					0	0	0		ENST00000565912.1_1_16:57413477-57416157:+|nuORF	ENST00000565912.1_1_16:57413477-57416157:+|nuORF	ENST00000565912.1_1_16:57413477-57416157:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.264404296875	2	482.284734	962.554916	-0.81791	-0.00039447	-1.0111	-0.00048763	-1.829	-0.0008821	482.2840821694833	37.719	0.16843	37.719	37.667	37.836	0					5	4	2	0	0	0	0.027866	1	3096	3096		37.159	5.2042	1	67360			73838	16933	51574	51658	81089	81089					0.07214064168465484
SLLTSRQL	8	Unmodified	_SLLTSRQL_					0	0	0		nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-2|INF2	nc|ENSG00000203485|Q27J81-2|INF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2583923339844	2	459.274367	916.53418	-1.0222	-0.00046948	-1.2898	-0.00059239	-2.3121	-0.0010619	459.27418657819044	37.935	0.38078	37.853	37.636	38.017	-0.082512					19	10	3	0	0	0	0.027866	1	3100	3100		30.318	0	1	179210			73839	10270	51575	51659	81090	81090					0.07257473788797597
SLLVGPSTQV	10	Unmodified	_SLLVGPSTQV_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3128967285156	2	500.787307	999.560061	-0.34228	-0.00017141	1.6504	0.00082652	1.3082	0.00065511	500.78809720426733	76.107	0.69889	76.107	75.732	76.431	0					39	17	4	0	0	0	0.03519	1	9353	9353		65.465	0	1	1369700	+		73840	25513	51576	51660	81091	81091					0.06026323240428155
SLLVHGFKP	9	Unmodified	_SLLVHGFKP_					0	0	0		ENSG00000174016|ENST00000308293|TENT5D	ENSG00000174016|ENST00000308293|TENT5D	ENSG00000174016|ENST00000308293|TENT5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7716369628906	2	499.295102	996.575651	-0.42152	-0.00021046	-0.068307	-3.4105E-05	-0.48983	-0.00024457	499.2947743621426	24.942	0.43573	24.715	24.451	24.887	-0.22683					14	9	2	0	0	0	0.024541	1	1104	1104		24.203	7.7296	1	69723			73841	8436	51577	51661	81092	81092					0.07722654548138053
SLLWAIVTV	9	Unmodified	_SLLWAIVTV_					0	0	0		nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000100346|Q9P0X4-4|CACNA1I;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3150939941406	2	501.305136	1000.59572	-0.70403	-0.00035293	-3.2574	-0.001633	-3.9614	-0.0019859	501.30325282450207	60.421	0.28453	60.245	60.037	60.322	-0.1761					10	6	2	0	0	0	0.021088	1	6718	6718		102.77	17.414	1	89628			73842	9891;789;2186	51578	51662	81093	81093					0.09544405488088614
SLLWAYCIL	9	Unmodified	_SLLWAYCIL_					0	0	0		SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant;ENSG00000014824|ENST00000264451|SLC30A9;ENST00000509683.5_1_4:42065060-42077708:+|nuORF	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8035888671875	2	541.291171	1080.56779	-0.824	-0.00044603	3.1204	0.0016891	2.2964	0.001243	541.2924787245507	96.449	1.0275	96.449	96.075	97.102	0					40	23	3	0	0	0	0.024354	1	12288	12288		47.916	13.743	1	175210			73843	925	51579	51663	81094	81094					0.030727592363291478
SLLWAYCIL	9	Unmodified	_SLLWAYCIL_					0	0	0		SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant;ENSG00000014824|ENST00000264451|SLC30A9;ENST00000509683.5_1_4:42065060-42077708:+|nuORF	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.291171	1080.56779	-0.016923	-9.1602E-06	2.1789	0.0011794	2.162	0.0011703	541.2922106139018	96.156	0.41206	96.02	95.81	96.223	-0.1367	-0.25171	-0.00027448	NaN	38.806	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67110			73844	925	51579	51663							0.030727592363291478
SLLWAYCIL	9	Unmodified	_SLLWAYCIL_					0	0	0		SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant;ENSG00000014824|ENST00000264451|SLC30A9;ENST00000509683.5_1_4:42065060-42077708:+|nuORF	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.291171	1080.56779	0.48457	0.00026229	2.4212	0.0013106	2.9057	0.0015729	541.2921818129116	96.213	0.4995	96.09	95.728	96.227	-0.12305	-0.18175	-1.2223E-05	NaN	38.806	17	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119270			73845	925	51579	51663							0.030727592363291478
SLLWPISPL	9	Unmodified	_SLLWPISPL_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.3034057617188	2	513.305136	1024.59572	-0.084332	-4.3288E-05	-4.2722	-0.0021929	-4.3565	-0.0022362	513.3028194610532	63.351	0.97613	63.1	62.683	63.659	-0.25141					45	25	2	0	0	0	0.35646	1	7383	7383		68.787	0	1	3022200			73846	16453	51580	51664	81095	81095					0.08440405488090619
SLLWPISPL	9	Unmodified	_SLLWPISPL_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	513.305136	1024.59572	-0.63729	-0.00032712	-3.7764	-0.0019384	-4.4137	-0.0022656	513.3030355482732	63.128	0.79259	63.128	62.729	63.522	0	0.0013871	0.00067363	NaN	68.787	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3903100			73847	16453	51580	51664							0.08440405488090619
SLLWPISPL	9	Unmodified	_SLLWPISPL_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	513.305136	1024.59572	0.82465	0.0004233	-5.2115	-0.0026751	-4.3868	-0.0022518	513.3023142752752	63.089	1.542	63.144	62.801	64.343	0.054104	0.017046	-0.00079962	NaN	68.787	72	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3150600			73848	16453	51580	51664							0.08440405488090619
SLLWPISPL	9	Unmodified	_SLLWPISPL_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.305136	1024.59572	-0.070164	-3.6016E-05	-4.4338	-0.0022759	-4.504	-0.0023119	513.3025714315332	63.347	0.77979	63.125	62.775	63.555	-0.22163	-0.00134	-1.2608E-06	NaN	68.787	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446120			73849	16453	51580	51664							0.08440405488090619
SLLWPISPL	9	Unmodified	_SLLWPISPL_					0	0	0		ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	ENST00000542452.1_1_11:73727738-73744892:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.305136	1024.59572	-0.23164	-0.0001189	-4.1508	-0.0021306	-4.3824	-0.0022495	513.302692132372	63.32	0.71324	63.136	62.788	63.501	-0.18386	0.0096652	0.00028932	NaN	68.787	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567420			73850	16453	51580	51664							0.08440405488090619
SLLWSLPH	8	Unmodified	_SLLWSLPH_					0	0	0		ENST00000531958.5_1_11:67183673-67183790:+|nuORF	ENST00000531958.5_1_11:67183673-67183790:+|nuORF	ENST00000531958.5_1_11:67183673-67183790:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2672424316406	2	476.766178	951.517802	-0.0087414	-4.1676E-06	4.3559	0.0020767	4.3472	0.0020726	476.7683748351493	54.596	0.58799	54.45	54.173	54.761	-0.14609					35	15	3	0	0	0	0.027866	1	5816	5816		60.294	0	1	727480			73851	16276	51581	51665	81096	81096					0.04010392622706149
SLLWVKSAW	9	Unmodified	_SLLWVKSAW_					0	0	0		chr8:129752820-129754552|279|12.69|0.25|5.67|-|2|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|56	chr8:129752820-129754552|279|12.69|0.25|5.67|-|2|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|56	chr8:129752820-129754552|279|12.69|0.25|5.67|-|2|TE_info:L1MA2,L1MA2_dup3371,L1,LINE,donor,+,129754552,129757710|GSDMC,None|56	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2584228515625	2	545.30821	1088.60187	-0.3901	-0.00021273	-0.5081	-0.00027707	-0.8982	-0.0004898	545.307808398277	61.235	0.61061	61.029	60.772	61.382	-0.20599					27	14	3	0	0	0	0.024477	1	6806	6806		27.882	4.3595	1	280780			73852	433	51582	51666	81097	81097					0.06110923719620587
SLLYAPETF	9	Unmodified	_SLLYAPETF_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7432861328125	2	520.768583	1039.52261	-0.71331	-0.00037147	-1.0291	-0.00053595	-1.7425	-0.00090742	521.2704267611841	38.082	0.20055	37.903	37.739	37.939	-0.17929					8	5	2	0	0	0	0.024354	1	3115	3115		47.916	16.386	1	149470			73853	8838	51583	51667	81098	81098					0.00443231974804803
SLLYLGRPN	9	Unmodified	_SLLYLGRPN_					0	0	0			REV__ENST00000378330.6_1_16:89334232-89334364:-|nuORF	REV__ENST00000378330.6_1_16:89334232-89334364:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.780517578125	2	516.795466	1031.57638	-0.80114	-0.00041403	-4.0345	-0.002085	-4.8357	-0.0024991	516.7932639506571	44.588	0.40713	44.625	44.41	44.817	0.0369					19	11	2	0	0	0	0.024381	1	4202	4202		29.15	0	1	164330	+		73854	31400	51584	51668	81099	81099					0.06185449197187154
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2793884277344	2	488.279118	974.543683	0.22154	0.00010817	-0.33469	-0.00016342	-0.11315	-5.5247E-05	488.2788760184981	77.273	1.3678	77.273	76.955	78.323	0					83	32	4	0	0	0	0.013995	4	9548	9526;9537;9548;9560		181.81	85.615	1	7108900			73855	5545	51585	51669	81100;81101;81102;81103	81102					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2791442871094	2	488.279118	974.543683	0.058113	2.8375E-05	-0.18175	-8.8743E-05	-0.12363	-6.0368E-05	488.2789229075374	77.453	1.366	77.242	76.954	78.32	-0.21088					82	32	4	0	0	0	0.016871	5	9526	9516;9526;9538;9550;9563		152.47	58.464	1	7108800			73856	5545	51585	51669	81104;81105;81106;81107;81108	81105					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.27923583984375	2	488.279118	974.543683	-0.42628	-0.00020814	0.23844	0.00011643	-0.18784	-9.1717E-05	488.27915372929203	77.308	1.1721	77.321	77.021	78.193	0.013504					82	27	5	0	0	0	0.016871	4	9460	9449;9460;9472;9485		152.47	67.555	1	7405100			73857	5545	51585	51669	81109;81110;81111;81112	81110					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2794189453125	2	488.279118	974.543683	-0.024747	-1.2083E-05	-0.093694	-4.5749E-05	-0.11844	-5.7832E-05	488.278966016933	77.47	0.98814	77.208	77.003	77.991	-0.26202					49	23	3	0	0	0	0.016871	3	9200	9200;9212;9226		152.47	78.216	1	2448400			73858	5545	51585	51669	81113;81114;81115	81113					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.27960205078125	2	488.279118	974.543683	0.94226	0.00046009	-1.1008	-0.00053752	-0.15858	-7.743E-05	488.2784701777429	77.441	0.7296	77.199	77.009	77.739	-0.24232					39	17	4	0	0	0	0.016871	4	9216	9207;9216;9227;9239		152.47	70.166	1	1886100			73859	5545	51585	51669	81116;81117;81118;81119	81117					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.2790222167969	2	488.279118	974.543683	-0.084268	-4.1146E-05	-0.45766	-0.00022347	-0.54193	-0.00026461	488.2788377490768	77.347	1.0048	77.185	76.946	77.951	-0.16196					45	23	3	0	0	0	0.016871	5	9199	9178;9183;9187;9199;9212		152.47	70.166	1	1886500			73860	5545	51585	51669	81120;81121;81122;81123;81124	81123					0.05539242074326012
SLMAWLFI	8	Unmodified	_SLMAWLFI_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.27691650390625	2	490.767332	979.52011	0.38203	0.00018749	2.0458	0.001004	2.4278	0.0011915	490.7684764753913	76.686	0.34276	76.435	76.314	76.657	-0.25162					12	7	2	0	0	0	0.027866	1	9110	9110		26.796	0	1	83566	+		73861	24979	51586	51670	81125	81125					0.02953105036147008
SLMDLTLLL	9	Oxidation (M)	_SLM(Oxidation (M))DLTLLL_		SLM(1)DLTLLL		SLM(53)DLTLLL	0	0	1		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;BAIAP2-TBCD|1|fusion;ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MSMS	OPSCC_39_ClassI_Rep-3	3	517.7941284179688	2	517.793743	1033.57293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.7	1	100.69	100.19	101.19	-0.0054474								0	0	0	0.49654	1	12807	12807		53.351	7.3995	1				73862	5503	51587	51671	81126	81126		234			0.057490183083018565
SLMEILYTL	9	Oxidation (M)	_SLM(Oxidation (M))EILYTL_		SLM(1)EILYTL		SLM(79)EILYTL	0	0	1		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.7900390625	2	549.791201	1097.56785	-0.36138	-0.00019869	0.38361	0.0002109	0.022222	1.2218E-05	549.7911622800864	92.593	0.82116	92.601	92.15	92.971	0.0077209					42	19	3	0	0	0	0.27161	1	11684	11684		79.451	13.986	1	522380			73863	7823	51588	51672	81127	81127		319			0.022967144456970345
SLMEILYTL	9	Oxidation (M)	_SLM(Oxidation (M))EILYTL_					0	0	1		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	549.791201	1097.56785	-0.72561	-0.00039894	0.72154	0.0003967	-0.0040706	-2.238E-06	549.7914605603969	92.52	0.78941	92.52	92.178	92.967	0	0.048329	0.00013812	NaN	79.451	47	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450360			73864	7823	51588	51672				319			0.022967144456970345
SLMEILYTL	9	Oxidation (M)	_SLM(Oxidation (M))EILYTL_					0	0	1		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	549.791201	1097.56785	-0.85775	-0.00047158	0.85896	0.00047225	0.0012051	6.6258E-07	549.7915641920553	92.525	0.83393	92.517	92.236	93.07	-0.0082932	0.04522	0.00028922	NaN	79.451	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467860			73865	7823	51588	51672				319			0.022967144456970345
SLMEILYTL	9	Oxidation (M)	_SLM(Oxidation (M))EILYTL_					0	0	1		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.791201	1097.56785	-1.8227	-0.0010021	1.0046	0.00055234	-0.81804	-0.00044975	549.7917636477277	92.466	0.56903	92.322	92.127	92.696	-0.14356	-0.14963	0.0004494	NaN	79.451	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102040			73866	7823	51588	51672				319			0.022967144456970345
SLMEILYTL	9	Oxidation (M)	_SLM(Oxidation (M))EILYTL_					0	0	1		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.791201	1097.56785	-0.18731	-0.00010298	-0.35954	-0.00019767	-0.54685	-0.00030066	549.7909912726957	92.516	0.48567	92.394	92.142	92.628	-0.12242	-0.077764	-0.0010506	NaN	79.451	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90109			73867	7823	51588	51672				319			0.022967144456970345
SLMEILYTL	9	Oxidation (M)	_SLM(Oxidation (M))EILYTL_					0	0	1		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.791201	1097.56785	-0.041167	-2.2633E-05	0.18355	0.00010091	0.14238	7.828E-05	549.7912294702868	92.617	0.62372	92.476	92.25	92.874	-0.14131	0.0042214	-0.00045345	NaN	79.451	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95488			73868	7823	51588	51672				319			0.022967144456970345
SLMGRLQSR	9	Unmodified	_SLMGRLQSR_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2952270507812	2	524.290025	1046.5655	-0.080928	-4.243E-05	1.6478	0.00086393	1.5669	0.0008215	524.793177765078	35.857	0.33476	35.643	35.547	35.882	-0.21379					12	9	2	0	0	0	0.024367	1	2783	2783		44.377	30.24	1	959760			73869	9402	51589	51673	81128	81128					0.04407723551230447
SLMIRQTI	8	Unmodified	_SLMIRQTI_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000489842.1_1_9:135931263-135933364:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.27880859375	2	481.278595	960.542637	-0.20433	-9.8339E-05	0.25885	0.00012458	0.054523	2.6241E-05	481.2786094444146	55.113	0.75533	54.967	54.533	55.288	-0.14609					36	20	2	0	0	0	0.44658	1	5899	5899		90.777	0	1	1893300			73870	6018	51590	51674	81129	81129					0.060787044337757834
SLMIRQTI	8	Unmodified	_SLMIRQTI_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000489842.1_1_9:135931263-135933364:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.278595	960.542637	-0.24023	-0.00011562	0.18133	8.7271E-05	-0.058896	-2.8346E-05	481.27856985277157	55.245	0.72071	55.014	54.601	55.322	-0.23087	0.029256	0.00012514	NaN	90.777	39	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2389100			73871	6018	51590	51674							0.060787044337757834
SLMIRQTI	8	Unmodified	_SLMIRQTI_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000489842.1_1_9:135931263-135933364:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.278595	960.542637	0.31303	0.00015066	-0.43573	-0.00020971	-0.1227	-5.9051E-05	481.27826898761094	55.179	0.77318	54.973	54.538	55.311	-0.20613	-0.011337	-0.00046882	NaN	90.777	41	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2101000			73872	6018	51590	51674							0.060787044337757834
SLMITCVTI	9	Carbamidomethyl (C),Oxidation (M)	_SLM(Oxidation (M))ITC(Carbamidomethyl (C))VTI_	SLMITC(1)VTI	SLM(1)ITCVTI	SLMITC(120)VTI	SLM(120)ITCVTI	0	1	1		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MSMS	OPSCC_39_ClassI_Rep-3	3	527.268310546875	2	527.269578	1052.5246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.933	1	53.028	52.528	53.528	0.095669								0	0	0	0.035282	1	5624	5624		115.46	7.3715	1				73873	4291	51591	51675	81130	81130	55	167			0.0004420139678131818
SLMKSAKLV	9	Unmodified	_SLMKSAKLV_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.79461669921875	2	488.79662	975.578688	-0.27957	-0.00013665	-3.5311	-0.001726	-3.8106	-0.0018626	488.7944517274822	62.704	0.64693	62.767	62.524	63.171	0.062763					34	15	3	0	0	0	0.34489	1	7230	7230		69.628	3.8245	1	4012300	+		73874	20605	51592	51676	81131	81131					0.0899216161063805
SLMKSAKLV	9	Unmodified	_SLMKSAKLV_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	488.79662	975.578688	-0.82116	-0.00040138	-3.2068	-0.0015675	-4.028	-0.0019689	488.79466132475267	62.917	0.89745	62.678	62.451	63.349	-0.23926	-0.039947	8.9404E-05	NaN	69.628	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4593400	+		73875	20605	51592	51676							0.0899216161063805
SLMKSAKLV	9	Unmodified	_SLMKSAKLV_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	488.79662	975.578688	-0.27957	-0.00013665	-3.5311	-0.001726	-3.8106	-0.0018626	488.7944517274822	62.704	0.64693	62.767	62.524	63.171	0.062763	0.048822	-0.0002276	NaN	69.628	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4012300	+		73876	20605	51592	51676							0.0899216161063805
SLMLLEEES	9	Unmodified	_SLMLLEEES_					0	0	0			REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF	REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2355346679688	2	525.754815	1049.49508	1.7061	0.00089701	-0.74546	-0.00039193	0.96068	0.00050508	525.754213397513	24.743	0.9027	24.562	24.329	25.232	-0.18089					33	20	2	0	0	0	0.024541	1	1163	1163		17.365	0.89182	1	134520	+		73877	32797	51593	51677	81132	81132					-0.027690393477541875
SLMLLEEES	9	Unmodified	_SLMLLEEES_					0	0	0			REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF	REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.754815	1049.49508	-0.62016	-0.00032605	1.7331	0.00091118	1.1129	0.00058513	525.7554727856201	24.897	0.77999	24.67	24.451	25.231	-0.22683	0.10989	0.0009756	NaN	16.473	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188400	+		73878	32797	51593	51677							-0.027690393477541875
SLMLLEEES	9	Unmodified	_SLMLLEEES_					0	0	0			REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF	REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.754815	1049.49508	-0.24146	-0.00012695	1.2356	0.00064964	0.99419	0.0005227	525.7553082019017	24.622	0.78337	24.447	24.252	25.035	-0.17484	-0.11248	0.00045253	NaN	16.473	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135700	+		73879	32797	51593	51677							-0.027690393477541875
SLNDGEPANL	10	Unmodified	_SLNDGEPANL_					0	0	0			REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8042602539062	2	515.246003	1028.47745	-0.37062	-0.00019096	3.9289	0.0020244	3.5583	0.0018334	515.2481806866357	58.759	0.92066	58.571	58.18	59.1	-0.18795					52	22	4	0	0	0	0.03519	1	6417	6417		40.058	8.5284	1	409620	+		73880	28322	51594	51678	81133	81133					-0.035646185583800616
SLNDGEPANL	10	Unmodified	_SLNDGEPANL_					0	0	0			REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.246003	1028.47745	0.19423	0.00010008	4.1	0.0021125	4.2943	0.0022126	515.2478814815703	58.68	0.48291	58.498	58.308	58.791	-0.18134	-0.032216	0.00027022	NaN	32.751	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392060	+		73881	28322	51594	51678							-0.035646185583800616
SLNDGEPANL	10	Unmodified	_SLNDGEPANL_					0	0	0			REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.246003	1028.47745	0.64949	0.00033465	3.6614	0.0018865	4.3109	0.0022212	515.2478435826373	58.764	0.43247	58.522	58.422	58.854	-0.24165	-0.0082738	-0.00018175	NaN	32.751	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426980	+		73882	28322	51594	51678							-0.035646185583800616
SLNEEIAFL	9	Unmodified	_SLNEEIAFL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2719116210938	2	518.27149	1034.52843	0.60808	0.00031515	-0.9158	-0.00047463	-0.30772	-0.00015948	518.2710439876298	85.152	1.1197	85.152	84.751	85.871	0					93	26	6	0	0	0	0.014988	5	10672	10661;10672;10683;10696;10709		161.9	28.086	1	6838300			73883	8525	51595	51679	81134;81135;81136;81137;81138	81135					0.012543304864948368
SLNEEIAFL	9	Unmodified	_SLNEEIAFL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.271484375	2	518.27149	1034.52843	-0.5327	-0.00027608	0.29017	0.00015039	-0.24253	-0.0001257	518.2716419042533	85.141	1.0794	85.083	84.605	85.684	-0.05761					62	25	3	0	0	0	0.013293	5	10631	10621;10631;10642;10653;10672		176.09	28.044	1	6442100			73884	8525	51595	51679	81139;81140;81141;81142;81143	81140					0.012543304864948368
SLNEEIAFL	9	Unmodified	_SLNEEIAFL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.271484375	2	518.27149	1034.52843	-0.95325	-0.00049404	0.60491	0.00031351	-0.34834	-0.00018054	518.2718388517111	85.073	1.6733	85.099	84.704	86.377	0.025528					79	39	4	0	0	0	0.013094	5	10594	10573;10584;10594;10607;10628		171.38	28.278	1	7224000			73885	8525	51595	51679	81144;81145;81146;81147;81148	81146					0.012543304864948368
SLNEEIAFL	9	Unmodified	_SLNEEIAFL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.27149	1034.52843	0.94261	0.00048853	-0.25915	-0.00013431	0.68346	0.00035422	518.2712730053576	85.159	0.53793	85.01	84.747	85.285	-0.14967	-0.058039	-0.00032493	NaN	171.38	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225890			73886	8525	51595	51679							0.012543304864948368
SLNEEIAFL	9	Unmodified	_SLNEEIAFL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.27149	1034.52843	0.6056	0.00031387	0.20895	0.00010829	0.81455	0.00042216	518.2714183562172	85.132	0.57829	84.995	84.705	85.284	-0.13752	-0.073017	0.00016028	NaN	171.38	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179200			73887	8525	51595	51679							0.012543304864948368
SLNFVELAS	9	Unmodified	_SLNFVELAS_					0	0	0			REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	REV__nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2593078613281	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	0.85329	1	13420	13420		35.618	2.8059	1	6618800	+		73888	22111	51596	51680	81149	81149					0.012100613149982564
SLNGLEVHL	9	Unmodified	_SLNGLEVHL_					0	0	0		nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;ENST00000493455.6_1_22:26840650-26860128:-|nuORF;ENST00000485842.5_1_22:26849853-26868905:-|nuORF	nc|ENSG00000100099|Q9NQG7-3|HPS4	nc|ENSG00000100099|Q9NQG7-3|HPS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2715148925781	2	491.271824	980.529095	-0.15752	-7.7387E-05	-0.1266	-6.2193E-05	-0.28412	-0.00013958	491.27164724634605	63.108	1.2077	63.108	62.854	64.062	0					68	32	3	0	0	0	0.082191	4	7358	7358;7368;7381;7395		116.9	48.117	1	7956500			73889	2133	51597	51681	81150;81151;81152;81153	81150					0.03805169926170038
SLNGLEVHL	9	Unmodified	_SLNGLEVHL_					0	0	0		nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;ENST00000493455.6_1_22:26840650-26860128:-|nuORF;ENST00000485842.5_1_22:26849853-26868905:-|nuORF	nc|ENSG00000100099|Q9NQG7-3|HPS4	nc|ENSG00000100099|Q9NQG7-3|HPS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.27130126953125	2	491.271824	980.529095	-0.015129	-7.4326E-06	-0.09538	-4.6857E-05	-0.11051	-5.429E-05	491.2716173421233	63.354	1.3579	63.102	62.809	64.166	-0.25141					94	36	4	0	0	0	0.03849	4	7374	7364;7374;7387;7401		134.81	44.034	1	6633700			73890	2133	51597	51681	81154;81155;81156;81157	81155					0.03805169926170038
SLNGLEVHL	9	Unmodified	_SLNGLEVHL_					0	0	0		nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;ENST00000493455.6_1_22:26840650-26860128:-|nuORF;ENST00000485842.5_1_22:26849853-26868905:-|nuORF	nc|ENSG00000100099|Q9NQG7-3|HPS4	nc|ENSG00000100099|Q9NQG7-3|HPS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2718505859375	2	491.271824	980.529095	1.0004	0.00049146	-1.2005	-0.00058978	-0.20011	-9.8311E-05	491.27111405420766	63.092	1.2097	63.146	62.845	64.054	0.054104					81	32	3	0	0	0	0.067814	4	7284	7274;7284;7298;7311		122.18	42.725	1	6469000			73891	2133	51597	51681	81158;81159;81160;81161	81159					0.03805169926170038
SLNGSLLGAW	10	Unmodified	_SLNGSLLGAW_					0	0	0		ENST00000413916.5_1_7:44807309-44807855:+|nuORF	ENST00000413916.5_1_7:44807309-44807855:+|nuORF	ENST00000413916.5_1_7:44807309-44807855:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.27154541015625	2	509.271824	1016.5291	-0.036332	-1.8503E-05	-0.049484	-2.5201E-05	-0.085815	-4.3703E-05	509.2715484341983	79.957	1.2543	79.807	79.068	80.322	-0.15002					53	29	3	0	0	0	0.34774	1	9568	9568		104.06	8.2416	1	470390			73892	13852	51598	51682	81162	81162					0.021491699262014663
SLNGTIFTV	9	Unmodified	_SLNGTIFTV_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.2611083984375	2	476.260925	950.507297	0.23732	0.00011302	-0.12419	-5.9145E-05	0.11313	5.3879E-05	476.2607204091255	77.14	0.67706	77.154	76.939	77.616	0.013496					31	15	3	0	0	0	0.10174	1	9451	9451		110.12	16.924	1	855920			73893	2047	51599	51683	81163	81163					0.03006365177623138
SLNGTIFTV	9	Unmodified	_SLNGTIFTV_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.260925	950.507297	1.2366	0.00058896	-1.2939	-0.00061623	-0.057279	-2.728E-05	476.2600857382709	77.105	0.67288	77.105	76.919	77.591	0	-0.01487	-0.00072582	NaN	110.12	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	830980			73894	2047	51599	51683							0.03006365177623138
SLNGTIFTV	9	Unmodified	_SLNGTIFTV_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.260925	950.507297	0.3669	0.00017474	-0.39669	-0.00018893	-0.029787	-1.4186E-05	476.26057203623054	77.312	0.67316	77.101	76.83	77.503	-0.21087	-0.019037	0.00012879	NaN	110.12	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	756060			73895	2047	51599	51683							0.03006365177623138
SLNIQREKEE	10	Unmodified	_SLNIQREKEE_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.1986389160156	3	415.88597	1244.63608	1.0161	0.00042257	0.074289	3.0896E-05	1.0904	0.00045347	415.88594541671534	20.121	1.1715	19.921	19.702	20.873	-0.19997					48	23	4	0	0	0	0.03519	1	587	587		47.228	0	1	483720			73896	2844	51600	51684	81164	81164					0.023546753499203987
SLNKEWKKKY	10	Unmodified	_SLNKEWKKKY_					0	0	0		nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;ENST00000478320.1_1_7:150825672-150834824:+|nuORF;nc|ENSG00000133612|Q96P47-5|AGAP3;AGAP3|p.S475Lfs*180|1|0.12|ENSG00000133612|chr7:151138179-151138179|C/-|frameshift_variant;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;ENSG00000135439|ENST00000547588|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000135439|ENST00000547588|AGAP2	ENSG00000135439|ENST00000547588|AGAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.893310546875	3	441.918834	1322.73467	-0.14789	-6.5354E-05	3.4893	0.001542	3.3415	0.0014767	442.25434157133145	35.122	0.62042	34.935	34.56	35.18	-0.18675					18	15	2	0	0	0	0.03519	1	2597	2597		36.318	1.1394	1	152430			73897	4894;6634	51601	51685	81165	81165					0.08621323385591495
SLNKYVEL	8	Unmodified	_SLNKYVEL_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8|PLCH1	REV__nc|ENSG00000114805|Q4KWH8|PLCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.26904296875	2	483.26875	964.522947	-0.41707	-0.00020156	0.67896	0.00032812	0.26189	0.00012656	483.26912384690826	83.13	1.507	83.13	82.793	84.3	0					95	34	5	0	0	0	0.47665	1	10412	10412		87.754	2.8388	1	10967000	+		73898	36582	51602	51686	81166	81166					0.039266516946554475
SLNLDHKT	8	Unmodified	_SLNLDHKT_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2201232910156	2	464.248349	926.482145	-0.6806	-0.00031597	-4.4468	-0.0020644	-5.1274	-0.0023804	464.24830790599464	35.055	1.4054	35.055	34.011	35.417	0					47	36	2	0	0	0	0.027866	1	2514	2514		23.042	12.177	1	246290	+		73899	25221	51603	51687	81167	81167					0.01596310375032317
SLNLKLVH	8	Unmodified	_SLNLKLVH_					0	0	0			REV__ENST00000524003.1_1_8:92080924-92081077:-|nuORF	REV__ENST00000524003.1_1_8:92080924-92081077:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7609558105469	2	462.287277	922.560001	-0.30818	-0.00014247	3.9615	0.0018313	3.6533	0.0016889	462.28764829038516	48.978	0.74775	48.825	48.364	49.111	-0.15277					22	20	2	0	0	0	0.027866	1	5043	5043		50.025	5.4935	1	86440	+		73900	34369	51604	51688	81168	81168					0.09562368031095048
SLNLSVLVH	9	Unmodified	_SLNLSVLVH_					0	0	0		chr11:70160982-70161161|258|15.26|0.05|8.32|+|1|TE_info:MIR,MIR_dup115192,MIR,SINE,donor,+,70160846,70160982|None,ANO1|2	chr11:70160982-70161161|258|15.26|0.05|8.32|+|1|TE_info:MIR,MIR_dup115192,MIR,SINE,donor,+,70160846,70160982|None,ANO1|2	chr11:70160982-70161161|258|15.26|0.05|8.32|+|1|TE_info:MIR,MIR_dup115192,MIR,SINE,donor,+,70160846,70160982|None,ANO1|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.302734375	2	491.290017	980.565481	0.74564	0.00036633	-3.3097	-0.001626	-2.5641	-0.0012597	491.2883203530373	87.492	0.21113	87.514	87.349	87.56	0.021263					6	4	2	0	0	0	0.024506	1	10918	10918		16.473	0	1	39899			73901	313	51605	51689	81169	81169					0.07442046822905013
SLNLTIRGE	9	Unmodified	_SLNLTIRGE_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1;ENST00000506275.1_1_5:52229685-52248278:+|nuORF;ENST00000504669.5_1_5:52201585-52248278:+|nuORF	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2853088378906	2	501.782556	1001.55056	-0.43052	-0.00021603	4.1229	0.0020688	3.6924	0.0018528	501.7841104950044	63.06	0.73803	62.876	62.573	63.311	-0.18386					43	19	3	0	0	0	0.5973	1	7116	7116		52.937	3.4007	1	2503700			73902	10530	51606	51690	81170	81170					0.04984554954921805
SLNLTRRS	8	Unmodified	_SLNLTRRS_					0	0	0		ENST00000595180.5_1_19:36036641-36037580:+|nuORF	ENST00000595180.5_1_19:36036641-36037580:+|nuORF	ENST00000595180.5_1_19:36036641-36037580:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7740173339844	2	473.775065	945.535577	-0.18499	-8.7646E-05	2.2272	0.0010552	2.0422	0.00096757	473.77631945781604	98.654	0.83246	98.488	98.2	99.033	-0.16532					24	18	2	0	0	0	0.97794	1	12219	12219		40.778	7.2626	1	221020			73903	17418	51607	51691	81171	81171					0.06063107877571383
SLNNWRKN	8	Unmodified	_SLNNWRKN_					0	0	0			REV__ENST00000402907.1_1_6:143663801-143663897:+|nuORF	REV__ENST00000402907.1_1_6:143663801-143663897:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.29248046875	2	516.27269	1030.53083	-0.056839	-2.9344E-05	-3.5116	-0.0018129	-3.5684	-0.0018423	516.7727883447972	63.562	0.9996	63.31	62.766	63.765	-0.25141					44	26	2	0	0	0	0.027866	1	7333	7333		58.782	5.8453	1	441070	+		73904	31879	51608	51692	81172	81172					0.016782237348024864
SLNPMRKK	8	Unmodified	_SLNPMRKK_					0	0	0		ENST00000493756.1_1_1:40997452-41013129:+|nuORF;ENSG00000117010|ENST00000372699|ZNF684	ENST00000493756.1_1_1:40997452-41013129:+|nuORF	ENST00000493756.1_1_1:40997452-41013129:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7843933105469	2	487.284211	972.55387	0.44448	0.00021659	1.1162	0.00054391	1.5607	0.0007605	487.2845683278866	102.07	0.72652	101.9	101.6	102.33	-0.17178					25	17	2	0	0	0	0.027866	1	12654	12654		11.511	0	1	46876			73905	3604	51609	51693	81173	81173					0.0664952652791726
SLNQYREP	8	Unmodified	_SLNQYREP_					0	0	0			REV__nc|ENSG00000112062|Q16539-4|MAPK14	REV__nc|ENSG00000112062|Q16539-4|MAPK14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2724304199219	2	503.751256	1005.48796	-0.12989	-6.5435E-05	-2.7548	-0.0013877	-2.8847	-0.0014532	503.7502923670383	50.455	0.32327	50.306	50.067	50.39	-0.14916					11	9	2	0	0	0	0.027866	1	5255	5255		24.203	0	1	85664	+		73906	36569	51610	51694	81174	81174					-0.01456591113299055
SLNRSSFSF	9	Unmodified	_SLNRSSFSF_					0	0	0			REV__ENST00000367097.7_1_6:158734381-158734558:+|nuORF	REV__ENST00000367097.7_1_6:158734381-158734558:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7329711914062	2	522.759081	1043.50361	-0.54551	-0.00028517	-0.12909	-6.7484E-05	-0.6746	-0.00035265	522.758950876257	38.724	0.5007	38.503	38.256	38.757	-0.22149					24	12	3	0	0	0	0.024397	1	3211	3211		47.657	10.629	1	298460	+		73907	31001	51611	51695	81175	81175					-0.01640304596230635
SLNSHIRVDS	10	Unmodified	_SLNSHIRVDS_					0	0	0		ZNF563|p.R181Sfs*11|1|0.23|ENSG00000188868|chr19:12319474-12319484|AGGTTTCTACG/-|frameshift_variant;nc|ENSG00000188868|Q8TA94-2|ZNF563;ENSG00000188868|ENST00000293725|ZNF563	ZNF563|p.R181Sfs*11|1|0.23|ENSG00000188868|chr19:12319474-12319484|AGGTTTCTACG/-|frameshift_variant	ZNF563|p.R181Sfs*11|1|0.23|ENSG00000188868|chr19:12319474-12319484|AGGTTTCTACG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.7930297851562	2	564.293819	1126.57309	0.24297	0.00013711	2.2643	0.0012777	2.5072	0.0014148	564.2959349383112	74.591	0.78014	74.328	73.83	74.61	-0.26326					29	18	2	0	0	0	0.03519	1	8803	8803		49.536	5.1589	1	687960			73908	9761	51612	51696	81176	81176					0.014861543525057641
SLNTKRYL	8	Unmodified	_SLNTKRYL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7850036621094	2	497.787641	993.56073	-0.24522	-0.00012207	-4.3929	-0.0021867	-4.6382	-0.0023088	497.78527598670604	90.872	0.62296	90.859	90.533	91.156	-0.012383					37	14	4	0	0	0	0.89627	1	11478	11478		51.335	3.4199	1	897500			73909	9713	51613	51697	81177	81177					0.06369162680130103
SLNVSRRV	8	Unmodified	_SLNVSRRV_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7779846191406	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.0516	1	9677	9677		29.15	4.6455	1	1283800	+		73910	36675	51614	51698	81178	81178					0.07307411740180214
SLPAHLPIL	9	Unmodified	_SLPAHLPIL_					0	0	0			REV__ENST00000527958.5_1_11:117039007-117039196:+|nuORF	REV__ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.21710205078125	2	480.797478	959.580402	-1.1216	-0.00053928	1.3248	0.00063694	0.20312	9.766E-05	480.79797602007613	37.351	0.50638	37.132	36.923	37.429	-0.2195					29	12	3	0	0	0	0.024325	1	2964	2964		24.203	6.8378	1	697340	+		73911	34482	51615	51699	81179	81179					0.09899538690910958
SLPALLRGR	9	Unmodified	_SLPALLRGR_					0	0	0		ENST00000371610.6_1_20:49348147-49348324:+|nuORF	ENST00000371610.6_1_20:49348147-49348324:+|nuORF	ENST00000371610.6_1_20:49348147-49348324:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.30426025390625	2	491.811451	981.608348	0.090021	4.4273E-05	-3.6805	-0.0018101	-3.5905	-0.0017659	491.8095991639156	59.284	0.55235	59.37	59.026	59.579	0.085682					35	14	3	0	0	0	0.024292	1	6678	6678		40.778	1.5253	1	1447200			73912	13005	51616	51700	81180	81180					0.11680861670993181
SLPALTNII	9	Unmodified	_SLPALTNII_					0	0	0		ENSG00000171759|ENST00000553106|PAH;ENST00000549111.5_1_12:103248818-103310977:-|nuORF	ENSG00000171759|ENST00000553106|PAH	ENSG00000171759|ENST00000553106|PAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7972412109375	2	471.286943	940.559333	1.4393	0.00067831	-1.3195	-0.00062184	0.11981	5.6464E-05	471.2857654842651	85.395	0.87259	85.395	84.876	85.748	0					31	20	3	0	0	0	0.024209	1	10758	10758		47.657	14.845	1	196130			73913	8189	51617	51701	81181	81181					0.0866752859137705
SLPARRAP	8	Unmodified	_SLPARRAP_					0	0	0		ENST00000370551.8_1_1:87380533-87380698:+|nuORF	ENST00000370551.8_1_1:87380533-87380698:+|nuORF	ENST00000370551.8_1_1:87380533-87380698:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.54119873046875	2	434.261594	866.508634	0.93028	0.00040398	-1.7013	-0.00073882	-0.77105	-0.00033484	434.26087865843647	20.567	0.29713	20.371	20.138	20.435	-0.19577					8	5	2	0	0	0	0.027866	1	551	551		1.2052	0	1	9603			73914	12965	51618	51702	81182	81182					0.07004044057032388
SLPAVWAQY	9	Unmodified	_SLPAVWAQY_					0	0	0		ENST00000475060.1_1_1:41448987-41449065:+|nuORF	ENST00000475060.1_1_1:41448987-41449065:+|nuORF	ENST00000475060.1_1_1:41448987-41449065:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	517.768917	1033.52328	-0.62995	-0.00032617	-3.8902	-0.0020142	-4.5201	-0.0023404	517.7667889479144	44.72	0.91255	44.471	44.111	45.023	-0.24833					33	23	2	0	0	0	0.024436	1	4176	4176		23.042	0	1	868340			73915	15047	51619	51703	81183	81183					0.007860714145181191
SLPCKHGAT	9	Unmodified	_SLPCKHGAT_					0	0	0			REV__ENST00000415912.6_1_1:21545281-21545563:-|nuORF	REV__ENST00000415912.6_1_1:21545281-21545563:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.750732421875	2	457.231645	912.448736	-0.35892	-0.00016411	-0.47612	-0.00021769	-0.83504	-0.0003818	457.23238445808596	30.448	0.24902	30.457	30.289	30.538	0.0086689					7	5	2	0	0	0	0.024436	1	1947	1947		10.866	0	1	25695	+		73916	32066	51620	51704	81184	81184					-0.010990146685230684
SLPDRVLR	8	Unmodified	_SLPDRVLR_					0	0	0			REV__ENSG00000146410|ENST00000420702|MTFR2	REV__ENSG00000146410|ENST00000420702|MTFR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	478.287808	954.561064	1.0327	0.00049395	-1.2997	-0.00062164	-0.26698	-0.00012769	478.2870108539039	51.542	0.44825	51.424	51.162	51.61	-0.11875					18	11	2	0	0	0	0.027866	1	5270	5270		56.721	21.103	1	578290	+		73917	24488	51621	51705	81185	81185					0.08196582399989438
SLPDRVLR	8	Unmodified	_SLPDRVLR_					0	0	0			REV__ENSG00000146410|ENST00000420702|MTFR2	REV__ENSG00000146410|ENST00000420702|MTFR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.2459716796875	2	478.287808	954.561064	1.0751	0.00051418	-0.69708	-0.0003334	0.37798	0.00018078	478.2869236891647	51.592	0.48723	51.408	51.218	51.705	-0.18404					24	12	3	0	0	0	0.027866	1	5274	5274		47.657	8.4045	1	641750	+		73918	24488	51621	51705	81186	81186					0.08196582399989438
SLPESGTADQ	10	Unmodified	_SLPESGTADQ_					0	0	0			REV__ENSG00000159708|ENST00000329956|LRRC36	REV__ENSG00000159708|ENST00000329956|LRRC36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7947082519531	2	502.730186	1003.44582	0.1117	5.6154E-05	1.3913	0.00069944	1.503	0.00075559	502.73051913633066	49.665	0.65337	49.665	49.399	50.052	0					31	17	4	0	0	0	0.03519	1	5207	5207		40.778	9.2484	1	202660	+		73919	25270	51622	51706	81187	81187					-0.055766113123354444
SLPESGTADQ	10	Unmodified	_SLPESGTADQ_					0	0	0			REV__ENSG00000159708|ENST00000329956|LRRC36	REV__ENSG00000159708|ENST00000329956|LRRC36	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	502.730186	1003.44582	-0.053827	-2.706E-05	1.2995	0.0006533	1.2457	0.00062624	502.73069079486106	49.83	0.47758	49.679	49.482	49.96	-0.1512	0.0068753	-4.7349E-05	NaN	40.778	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183310	+		73920	25270	51622	51706							-0.055766113123354444
SLPEVLPIL	9	Unmodified	_SLPEVLPIL_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.8061828613281	2	490.804968	979.595384	-0.21035	-0.00010324	1.2757	0.00062614	1.0654	0.0005229	490.80581023863124	96.38	1.7799	96.38	95.991	97.771	0					101	40	5	0	0	0	0.20304	3	12303	12284;12303;12320		88.643	8.7036	1	5427400			73921	371	51623	51707	81188;81189;81190	81189					0.1047698576824132
SLPEVLPIL	9	Unmodified	_SLPEVLPIL_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.80645751953125	2	490.804968	979.595384	0.60343	0.00029617	0.15894	7.8009E-05	0.76237	0.00037418	490.80522986585635	96.276	1.5143	96.283	95.988	97.502	0.0065079					93	34	5	0	0	0	0.14199	2	12250	12250;12264		101.21	15.852	1	4546800			73922	371	51623	51707	81191;81192	81191					0.1047698576824132
SLPEVLPIL	9	Unmodified	_SLPEVLPIL_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.8065490722656	2	490.804968	979.595384	0.83764	0.00041112	-0.0083106	-4.0789E-06	0.82933	0.00040704	490.8051528571539	96.333	1.6486	96.335	96.035	97.684	0.0020752					98	37	5	0	0	0	0.088511	1	12209	12209		114.59	25.943	1	5332500			73923	371	51623	51707	81193	81193					0.1047698576824132
SLPEVLPIL	9	Unmodified	_SLPEVLPIL_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.804968	979.595384	-0.095344	-4.6795E-05	0.38378	0.00018836	0.28844	0.00014157	490.80499009463875	96.151	0.5801	96.015	95.81	96.391	-0.1367	-0.18133	0.00020273	NaN	114.59	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103750			73924	371	51623	51707							0.1047698576824132
SLPEVLPIL	9	Unmodified	_SLPEVLPIL_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.804968	979.595384	0.8851	0.00043441	-0.18036	-8.8521E-05	0.70474	0.00034589	490.80484263745177	96.159	0.62619	96.036	95.813	96.44	-0.12305	-0.15997	-0.00035103	NaN	114.59	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134780			73925	371	51623	51707							0.1047698576824132
SLPEVLPIL	9	Unmodified	_SLPEVLPIL_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.804968	979.595384	-0.04868	-2.3893E-05	0.045271	2.2219E-05	-0.003409	-1.6732E-06	490.80498796751135	96.283	0.54346	96.127	95.923	96.466	-0.15646	-0.069142	-0.00012955	NaN	114.59	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133350			73926	371	51623	51707							0.1047698576824132
SLPFLPLGFQ	10	Unmodified	_SLPFLPLGFQ_					0	0	0		ENST00000464307.5_1_11:64373954-64374221:-|nuORF	ENST00000464307.5_1_11:64373954-64374221:-|nuORF	ENST00000464307.5_1_11:64373954-64374221:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.3348388671875	2	559.815867	1117.61718	-0.16741	-9.3719E-05	3.9546	0.0022138	3.7872	0.0021201	559.8177473450855	48.921	0.17413	48.921	48.795	48.969	0					7	4	2	0	0	0	0.03519	1	5007	5007		44.117	6.9577	1	64753			73927	14757	51624	51708	81194	81194					0.06307790516802925
SLPFPSAPL	9	Unmodified	_SLPFPSAPL_					0	0	0			REV__ENST00000335997.11_1_X:129199166-129199613:-|nuORF	REV__ENST00000335997.11_1_X:129199166-129199613:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7709655761719	2	464.760561	927.506569	0.95218	0.00044254	0.54287	0.0002523	1.495	0.00069484	464.76012159810085	76.099	0.46379	76.11	75.901	76.365	0.011635					17	11	2	0	0	0	0.024412	1	9267	9267		40.573	0	1	79102	+		73928	30539	51625	51709	81195	81195					0.03991570528569355
SLPFTASHLL	10	Unmodified	_SLPFTASHLL_					0	0	0			REV__ENST00000441966.1_1_6:29297957-29298365:-|nuORF	REV__ENST00000441966.1_1_6:29297957-29298365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8291625976562	2	543.303124	1084.5917	-0.96035	-0.00052176	-1.8866	-0.001025	-2.8469	-0.0015467	543.3008007122803	54.849	0.34435	54.849	54.524	54.869	0					18	9	2	0	0	0	0.03519	1	6016	6016		49.442	0	1	258500	+		73929	32553	51626	51710	81196	81196					0.05278315994382865
SLPFVAPEGL	10	Unmodified	_SLPFVAPEGL_					0	0	0			REV__ENST00000481474.5_1_6:28891330-28891657:-|nuORF	REV__ENST00000481474.5_1_6:28891330-28891657:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2847900390625	2	515.2844	1028.55425	-0.78762	-0.00040585	0.48952	0.00025224	-0.2981	-0.00015361	515.2845123020854	82.345	1.3976	82.371	81.859	83.257	0.025711					61	32	3	0	0	0	0.64538	1	10200	10200		71.877	3.3928	1	1626900	+		73930	33455	51627	51711	81197	81197					0.04111224728740126
SLPGKPTSAPE	11	Unmodified	_SLPGKPTSAPE_					0	0	0		ENST00000467912.5_1_3:153838872-153839088:-|nuORF	ENST00000467912.5_1_3:153838872-153839088:-|nuORF	ENST00000467912.5_1_3:153838872-153839088:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3114013671875	2	542.287671	1082.56079	-0.38369	-0.00020807	1.1988	0.0006501	0.81512	0.00044203	542.2877490123287	40.985	0.63514	40.985	40.623	41.258	0					48	17	4	0	0	0	0.024736	1	3593	3593		29.17	0	1	418440			73931	14856	51628	51712	81198	81198					0.02281117889469897
SLPHSRRA	8	Unmodified	_SLPHSRRA_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7796630859375	2	462.262125	922.509697	0.23877	0.00011037	3.3958	0.0015697	3.6345	0.0016801	462.26343371446814	68.418	0.77872	68.125	67.548	68.326	-0.29267					42	19	5	0	0	0	0.027866	1	8136	8136		21.96	0	1	264270			73932	2034	51629	51713	81199	81199					0.04534258425940152
SLPIREDTQ	9	Unmodified	_SLPIREDTQ_					0	0	0		nc|ENSG00000239389|Q9Y5I0-2|PCDHA13;ENSG00000239389|ENST00000289272|PCDHA13	nc|ENSG00000239389|Q9Y5I0-2|PCDHA13	nc|ENSG00000239389|Q9Y5I0-2|PCDHA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7899169921875	2	529.77747	1057.54039	0.40135	0.00021263	1.5822	0.0008382	1.9835	0.0010508	529.7781866845322	104.57	0.61816	104.41	104.2	104.82	-0.16759					42	17	3	0	0	0	0.024344	1	13017	13017		30.318	0	1	311400			73933	10758	51630	51714	81200	81200					0.01391947229649304
SLPKGEREV	9	Unmodified	_SLPKGEREV_					0	0	0		ENST00000551192.5_1_12:49719304-49723306:+|nuORF;ENST00000546735.5_1_12:49717501-49723306:+|nuORF;TROAP|p.M360Cfs*43|1|0.15|ENSG00000135451|chr12:49329215-49329215|C/-|frameshift_variant;ENSG00000135451|ENST00000257909|TROAP	ENST00000551192.5_1_12:49719304-49723306:+|nuORF	ENST00000551192.5_1_12:49719304-49723306:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7823486328125	2	507.782556	1013.55056	-0.18102	-9.1919E-05	0.14382	7.303E-05	-0.0372	-1.8889E-05	507.7825483532491	42.467	1.3916	42.335	42.082	43.474	-0.13219					87	38	5	0	0	0	0.50848	1	3881	3881		58.782	0	1	6701100			73934	4896	51631	51715	81201	81201					0.044325549548943854
SLPKGEREV	9	Unmodified	_SLPKGEREV_					0	0	0		ENST00000551192.5_1_12:49719304-49723306:+|nuORF;ENST00000546735.5_1_12:49717501-49723306:+|nuORF;TROAP|p.M360Cfs*43|1|0.15|ENSG00000135451|chr12:49329215-49329215|C/-|frameshift_variant;ENSG00000135451|ENST00000257909|TROAP	ENST00000551192.5_1_12:49719304-49723306:+|nuORF	ENST00000551192.5_1_12:49719304-49723306:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.78216552734375	2	507.782556	1013.55056	-0.10768	-5.468E-05	0.084225	4.2768E-05	-0.023459	-1.1912E-05	507.7825272849497	42.414	1.3311	42.44	42.186	43.517	0.026012					84	36	4	0	0	0	0.50848	1	3847	3847		58.782	0	1	6576800			73935	4896	51631	51715	81202	81202					0.044325549548943854
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2791442871094	2	464.279118	926.543683	0.030381	1.4105E-05	-0.89452	-0.00041531	-0.86414	-0.0004012	464.2792001448861	50.512	0.93597	50.362	49.856	50.792	-0.14916					90	27	6	0	0	0	0.2508	1	5272	5272		82.241	23.459	1	4401700			73936	6074	51632	51716	81203	81203					0.07747242074322003
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.27947998046875	2	464.279118	926.543683	0.81775	0.00037966	-1.3939	-0.00064715	-0.57614	-0.00026749	464.2788391564568	50.168	0.75558	50.249	49.989	50.744	0.08099					84	22	6	0	0	0	0.37611	1	5174	5174		67.494	7.1997	1	4655000			73937	6074	51632	51716	81204	81204					0.07747242074322003
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.279118	926.543683	0.18535	8.6052E-05	0.22539	0.00010464	0.41073	0.00019069	464.2791546210288	50.373	0.59677	50.268	49.972	50.569	-0.10558	-0.047832	-0.00013587	NaN	82.241	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1013100			73938	6074	51632	51716							0.07747242074322003
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.279118	926.543683	0.18844	8.749E-05	-0.0043946	-2.0403E-06	0.18405	8.5449E-05	464.27910867981774	50.629	0.44558	50.35	50.031	50.477	-0.27977	0.034065	-0.00034923	NaN	82.241	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1027400			73939	6074	51632	51716							0.07747242074322003
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.279118	926.543683	0.20014	9.2923E-05	-0.064467	-2.9931E-05	0.13568	6.2992E-05	464.27905095216136	50.487	0.44234	50.306	50.055	50.498	-0.18071	-0.009635	-0.00040501	NaN	82.241	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1276200			73940	6074	51632	51716							0.07747242074322003
SLPKIMII	8	Unmodified	_SLPKIMII_					0	0	0		chr8:124553686-124555742|186|13.44|0.61|4.46|-|0|None,MTSS1|1	chr8:124553686-124555742|186|13.44|0.61|4.46|-|0|None,MTSS1|1	chr8:124553686-124555742|186|13.44|0.61|4.46|-|0|None,MTSS1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7507629394531	2	457.790807	913.56706	-0.81568	-0.00037341	-0.77676	-0.00035559	-1.5924	-0.00072901	457.78953828657865	30.405	0.16666	30.405	30.3	30.467	0					5	3	2	0	0	0	0.027866	1	1956	1956		38.806	0	1	26447			73941	430	51633	51717	81205	81205					0.10681964587286075
SLPKKTEKGLF	11	Unmodified	_SLPKKTEKGLF_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	625.3677368164062	2	624.371538	1246.72852	-0.18259	-0.00011401	-1.5872	-0.00099103	-1.7698	-0.001105	624.3703475493697	99.998	0.6033	99.993	99.734	100.34	-0.0050888					29	16	2	0	0	0	0.024756	1	12701	12701		52.937	6.9645	1	1025900			73942	8100	51634	51718	81206	81206					0.1150280515405484
SLPKSAGQGGL	11	Unmodified	_SLPKSAGQGGL_					0	0	0			REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7823791503906	2	507.782556	1013.55056	-0.18102	-9.1919E-05	0.14382	7.303E-05	-0.0372	-1.8889E-05	507.7825483532491	42.467	1.3916	42.335	42.082	43.474	-0.13219					87	38	5	0	0	0	0.58492	1	3904	3904		70.816	2.3315	1	6701100	+		73943	35963	51635	51719	81207	81207					0.04432554954905754
SLPKYMDKL	9	Unmodified	_SLPKYMDKL_					0	0	0			REV__ENST00000581296.2_2_17:43585477-43590583:-|nuORF	REV__ENST00000581296.2_2_17:43585477-43590583:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3106689453125	2	547.79936	1093.58417	0.099931	5.4742E-05	-1.7202	-0.00094232	-1.6203	-0.00088757	547.7988160679511	68.292	0.48669	68.037	67.78	68.267	-0.25516					15	9	2	0	0	0	0.024457	1	7851	7851		21.96	0	1	191990	+		73944	35530	51636	51720	81208	81208					0.04111840402447342
SLPLAKGKQN	10	Unmodified	_SLPLAKGKQN_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.3128662109375	2	528.314023	1054.61349	0.21443	0.00011328	0.32365	0.00017099	0.53808	0.00028428	528.3143449651923	97.311	1.1074	97.32	96.663	97.77	0.0089111					50	24	3	0	0	0	1.0508	1	12397	12397		39.253	5.0803	1	240920	+		73945	21142	51637	51721	81209	81209					0.08837120742964544
SLPLAPNV	8	Unmodified	_SLPLAPNV_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	405.7398376464844	2	405.739628	809.464704	0.53092	0.00021541	-0.047167	-1.9138E-05	0.48375	0.00019628	405.73950596669766	31.581	0.98145	31.396	31.099	32.081	-0.18503					59	23	4	0	0	0	0.78609	1	2106	2106		60.294	0	1	1772200	+		73946	28396	51638	51722	81210	81210					0.05235014840036456
SLPLEKIY	8	Unmodified	_SLPLEKIY_					0	0	0			REV__ENST00000366997.8_1_1:211922105-211922204:-|nuORF	REV__ENST00000366997.8_1_1:211922105-211922204:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7843322753906	2	481.781493	961.548434	-0.54444	-0.0002623	0.43588	0.00021	-0.10857	-5.2305E-05	481.781555565653	84.527	0.45705	84.553	84.206	84.663	0.026558					20	10	3	0	0	0	0.027866	1	10518	10518		28.254	0	1	217360	+		73947	30997	51639	51723	81211	81211					0.06612126217089553
SLPLKMNPN	9	Unmodified	_SLPLKMNPN_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.307861328125	2	507.276052	1012.53755	0.29176	0.000148	0.8807	0.00044676	1.1725	0.00059476	507.27587233358537	87.591	1.145	87.555	87.194	88.339	-0.035355					54	27	3	0	0	0	0.024021	1	10987	10987		49.442	7.0454	1	180070			73948	4876	51640	51724	81212	81212					0.03178400571152906
SLPLKMNPN	9	Unmodified	_SLPLKMNPN_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.276052	1012.53755	0.075295	3.8195E-05	1.7591	0.00089237	1.8344	0.00093057	507.27616669570955	87.688	1.3175	87.688	87.152	88.47	0	0.04847	0.00080064	NaN	49.442	78	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156730			73949	4876	51640	51724							0.03178400571152906
SLPLKMNPN	9	Unmodified	_SLPLKMNPN_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.276052	1012.53755	0.779	0.00039517	0.92685	0.00047017	1.7059	0.00086534	507.27585354731525	87.652	1.4483	87.671	87.092	88.54	0.018555	0.031487	-4.3767E-05	NaN	49.442	84	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140970			73950	4876	51640	51724							0.03178400571152906
SLPLLLLLLG	10	Unmodified	_SLPLLLLLLG_					0	0	0		nc|ENSG00000170476|Q8WU39-5|MZB1;nc|ENSG00000170476|Q8WU39-4|MZB1;ENST00000503120.5_1_5:138725194-138725560:-|nuORF;nc|ENSG00000170476|Q8WU39-2|MZB1;ENSG00000170476|ENST00000302125|MZB1	nc|ENSG00000170476|Q8WU39-5|MZB1	nc|ENSG00000170476|Q8WU39-5|MZB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.2457885742188	2	526.359911	1050.70527	-0.34452	-0.00018134	2.9567	0.0015563	2.6121	0.0013749	526.361331117426	38.442	0.84872	38.223	37.861	38.71	-0.21849					37	23	2	0	0	0	0.03519	1	3102	3102		6.7355	0.42289	1	179070			73951	8046	51641	51725	81213	81213					0.18194411107424457
SLPLPLHASD	10	Unmodified	_SLPLPLHASD_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.254150390625	2	525.284931	1048.55531	-0.44542	-0.00023397	0.16899	8.8768E-05	-0.27643	-0.0001452	525.2847388154756	45.05	0.66277	44.839	44.554	45.217	-0.21109					25	17	2	0	0	0	0.03519	1	4279	4279		10.265	0	1	825750	+		73952	24158	51642	51726	81214	81214					0.03297439097673305
SLPLRKEL	8	Unmodified	_SLPLRKEL_					0	0	0		ENSG00000179152|ENST00000342649|TCAIM;ENST00000431657.5_1_3:44409097-44442080:+|nuORF;nc|ENSG00000179152|Q8N3R3-4|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.3008117675781	2	478.300384	954.586216	0.68218	0.00032629	-0.42685	-0.00020416	0.25533	0.00012212	478.30004474971287	65.426	1.0209	65.426	65.124	66.145	0					71	27	4	0	0	0	0.56067	1	7754	7754		79.939	0	1	3881900			73953	8878	51643	51727	81215	81215					0.10710637202555517
SLPLRKEL	8	Unmodified	_SLPLRKEL_					0	0	0		ENSG00000179152|ENST00000342649|TCAIM;ENST00000431657.5_1_3:44409097-44442080:+|nuORF;nc|ENSG00000179152|Q8N3R3-4|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.2999267578125	2	478.300384	954.586216	0.16459	7.8724E-05	0.031339	1.499E-05	0.19593	9.3714E-05	478.30026947860597	65.818	1.1665	65.546	65.055	66.221	-0.27282					82	31	4	0	0	0	0.56067	1	7767	7767		79.939	0	1	4858100			73954	8878	51643	51727	81216	81216					0.10710637202555517
SLPLRKEL	8	Unmodified	_SLPLRKEL_					0	0	0		ENSG00000179152|ENST00000342649|TCAIM;ENST00000431657.5_1_3:44409097-44442080:+|nuORF;nc|ENSG00000179152|Q8N3R3-4|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.3005676269531	2	478.300384	954.586216	0.056827	2.718E-05	0.18078	8.6466E-05	0.2376	0.00011365	478.30033460004853	65.48	1.3155	65.517	64.928	66.244	0.037384					79	35	3	0	0	0	0.2917	2	7671	7671;7682		115.46	0	1	4486500			73955	8878	51643	51727	81217;81218	81217					0.10710637202555517
SLPLSTKSPSP	11	Unmodified	_SLPLSTKSPSP_					0	0	0			REV__ENSG00000176915|ENST00000357997|ANKLE2	REV__ENSG00000176915|ENST00000357997|ANKLE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2589111328125	2	557.311146	1112.60774	0.21406	0.0001193	-2.8969	-0.0016145	-2.6828	-0.0014952	557.309233786979	79.588	0.49986	79.369	79.118	79.618	-0.21923					15	11	2	0	0	0	0.024771	1	9498	9498		41.08	21.977	1	79911	+		73956	27060	51644	51728	81219	81219					0.05593977440616982
SLPPCPMVDVD	11	Unmodified	_SLPPCPMVDVD_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7703247070312	2	586.769942	1171.52533	0.30602	0.00017956	-0.006735	-3.9519E-06	0.29929	0.00017561	586.7696825708855	79.589	0.91988	79.343	78.987	79.907	-0.2465					55	21	4	0	0	0	0.69247	1	9518	9518		64.207	3.2353	1	2308400			73957	10846	51645	51729	81220	81220					-0.05357003954213724
SLPPHLVLL	9	Unmodified	_SLPPHLVLL_					0	0	0			REV__ENST00000299954.13_1_17:65688699-65688948:+|nuORF	REV__ENST00000299954.13_1_17:65688699-65688948:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.28692626953125	2	494.813128	987.611703	0.59451	0.00029417	-0.59573	-0.00029478	-0.0012232	-6.0524E-07	494.8125483272741	67.887	0.53348	67.632	67.412	67.945	-0.25516					25	12	3	0	0	0	0.024466	1	7797	7797		25.45	10.585	1	262110	+		73958	30039	51646	51730	81221	81221					0.11740111724986946
SLPPPPPTL	9	Unmodified	_SLPPPPPTL_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.28076171875	2	459.768386	917.522219	-0.032692	-1.5031E-05	0.50695	0.00023308	0.47426	0.00021805	459.76856116695393	71.388	0.88011	71.126	70.523	71.403	-0.26199					42	20	4	0	0	0	0.024205	1	8300	8300		20.947	0	1	479640			73959	7493	51647	51731	81222	81222					0.060158570455996596
SLPPSAQTL	9	Unmodified	_SLPPSAQTL_					0	0	0			REV__ENST00000586889.1_1_19:10199993-10200119:+|nuORF	REV__ENST00000586889.1_1_19:10199993-10200119:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	457.2518615722656	2	457.2531	912.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.608	1	16.4	15.9	16.9	-0.20777								0	0	0	0.69215	1	77	77		21.96	0	1		+		73960	35611	51648	51732	81223	81223					0.031900786605774556
SLPREKKLV	9	Unmodified	_SLPREKKLV_					0	0	0			REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.802734375	2	535.340041	1068.66553	0.17751	9.5028E-05	-0.50835	-0.00027214	-0.33084	-0.00017711	535.3398115382809	65.917	0.46321	65.917	65.681	66.145	0					28	11	3	0	0	0	0.024323	1	7866	7866		44.117	3.3386	1	449280	+		73961	21476	51649	51733	81224	81224					0.13394284156697722
SLPRKIEVP	9	Unmodified	_SLPRKIEVP_					0	0	0		nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	nc|ENSG00000051009|Q8N612-3|FHIP1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.7666015625	2	519.818941	1037.62333	-0.39503	-0.00020534	-0.96732	-0.00050283	-1.3623	-0.00070817	519.8193844194831	47.456	0.47427	47.359	47.083	47.558	-0.096649					23	12	3	0	0	0	0.023837	1	4648	4648		64.207	7.4862	1	349050			73962	1143	51650	51734	81225	81225					0.10602308748320866
SLPRLKPDL	9	Unmodified	_SLPRLKPDL_					0	0	0			REV__ENST00000565060.1_1_16:27280195-27280997:+|nuORF	REV__ENST00000565060.1_1_16:27280195-27280997:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2410278320312	2	519.818941	1037.62333	-0.55664	-0.00028935	-0.081281	-4.2252E-05	-0.63793	-0.00033161	519.819114335051	76.609	0.68967	76.381	76.041	76.731	-0.22843					22	16	2	0	0	0	0.0245	1	9365	9365		36.447	0	1	124190	+		73963	35266	51651	51735	81226	81226					0.10602308748298128
SLPRRPLPAP	10	Unmodified	_SLPRRPLPAP_					0	0	0		ENST00000503294.5_1_1:1192669-1203207:-|nuORF	ENST00000503294.5_1_1:1192669-1203207:-|nuORF	ENST00000503294.5_1_1:1192669-1203207:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7800903320312	2	552.337833	1102.66111	-0.43771	-0.00024176	-0.74703	-0.00041261	-1.1847	-0.00065437	552.3376974649091	45.419	0.36656	45.419	45.246	45.613	0					16	10	2	0	0	0	0.03519	1	4407	4407		34.173	7.4796	1	195750			73964	15689	51652	51736	81227	81227					0.11388819733792843
SLPSGQQIAR	10	Unmodified	_SLPSGQQIAR_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3165893554688	2	528.793455	1055.57236	-1.0473	-0.00055378	-3.0165	-0.0015951	-4.0637	-0.0021489	528.7918762085965	81.636	0.65025	81.636	81.299	81.95	0					27	15	2	0	0	0	0.03519	1	10212	10212		35.152	6.0025	1	651680			73965	8901	51653	51737	81228	81228					0.046793597034593404
SLPSISLPLSL	11	Unmodified	_SLPSISLPLSL_					0	0	0			REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.8403930664062	2	563.839539	1125.66453	-0.90877	-0.0005124	2.2717	0.0012809	1.363	0.0007685	563.8406389975278	58.257	1.264	58.082	57.825	59.089	-0.1749					75	34	4	0	0	0	0.44817	2	6560	6548;6560		79.713	2.395	1	2114600	+		73966	30010	51654	51738	81229;81230	81230					0.10672024997165863
SLPSISLPLSL	11	Unmodified	_SLPSISLPLSL_					0	0	0			REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	563.839539	1125.66453	-0.90877	-0.0005124	2.2717	0.0012809	1.363	0.0007685	563.8406389975278	58.257	1.264	58.082	57.825	59.089	-0.1749	0.06405	0.00013193	NaN	79.713	75	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2114600	+		73967	30010	51654	51738							0.10672024997165863
SLPSISLPLSL	11	Unmodified	_SLPSISLPLSL_					0	0	0			REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	REV__ENST00000297109.10_1_5:153839035-153839215:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.839539	1125.66453	-0.85861	-0.00048412	2.252	0.0012697	1.3934	0.00078563	563.8406427794857	57.895	1.0619	57.986	57.683	58.745	0.091217	-0.032027	0.00010962	NaN	79.713	78	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2378500	+		73968	30010	51654	51738							0.10672024997165863
SLPSPSSAPPP	11	Unmodified	_SLPSPSSAPPP_					0	0	0			REV__nc|ENSG00000106290|P49848-4|TAF6	REV__nc|ENSG00000106290|P49848-4|TAF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	518.769114	1035.52368	-0.77639	-0.00040277	-0.20978	-0.00010883	-0.98616	-0.00051159	518.7688351866911	44.213	1.0059	43.968	43.711	44.717	-0.2444					69	26	4	0	0	0	0.024738	1	4176	4176		14.137	0	1	1794300	+		73969	21606	51655	51739	81231	81231					0.007334463437018712
SLPTFLFLL	9	Unmodified	_SLPTFLFLL_					0	0	0		ENSG00000175003|ENST00000366963|SLC22A1;nc|ENSG00000175003|O15245-4|SLC22A1;nc|ENSG00000175003|O15245-3|SLC22A1;nc|ENSG00000175003|O15245-2|SLC22A1	ENSG00000175003|ENST00000366963|SLC22A1	ENSG00000175003|ENST00000366963|SLC22A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.29345703125	2	525.815336	1049.61612	-0.83607	-0.00043962	-3.6333	-0.0019105	-4.4694	-0.0023501	525.8134160828863	52.376	0.27327	52.258	52.126	52.4	-0.11875					10	6	2	0	0	0	0.024487	1	5422	5422		24.203	6.8378	1	71925			73970	8521	51656	51740	81232	81232					0.09329576147911212
SLPVFPLPL	9	Unmodified	_SLPVFPLPL_					0	0	0		ENST00000544944.6_1_19:45542853-45543099:+|nuORF	ENST00000544944.6_1_19:45542853-45543099:+|nuORF	ENST00000544944.6_1_19:45542853-45543099:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.8055419921875	2	491.802229	981.589904	1.2856	0.00063228	3.1607	0.0015544	4.4463	0.0021867	491.80490064509485	59.822	1.1024	59.822	59.37	60.473	0					71	29	5	0	0	0	0.18276	2	6860	6849;6860		92.191	1.8208	1	11972000			73971	16487	51657	51741	81233;81234	81234					0.09837306976430682
SLPVMATFGCC	11	Unmodified	_SLPVMATFGCC_					0	0	0		ENST00000367240.6_1_1:203007836-203007989:+|nuORF	ENST00000367240.6_1_1:203007836-203007989:+|nuORF	ENST00000367240.6_1_1:203007836-203007989:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.749267578125	2	564.747956	1127.48136	-0.34996	-0.00019764	1.6324	0.00092189	1.2824	0.00072425	564.7491088586585	55.655	1.0202	55.499	55.227	56.247	-0.15602					71	27	5	0	0	0	0.40931	1	6161	6161		82.241	5.4664	1	4627900			73972	12849	51658	51742	81235	81235					-0.07728311652158482
SLPVSLTAN	9	Unmodified	_SLPVSLTAN_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;TTLL4|p.E531Vfs*13|1|0.09|ENSG00000135912|chr2:218740161-218740162|-/TCACAGTT|frameshift_variant	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2693786621094	2	451.2531	900.491647	-0.44776	-0.00020205	1.8589	0.00083885	1.4112	0.0006368	451.2537549283219	38.66	0.28487	38.66	38.395	38.68	0					10	6	2	0	0	0	0.024209	1	3238	3238		47.657	17.154	1	679060			73973	4947	51659	51743	81236	81236					0.037420786605480316
SLPVSSIPIY	10	Unmodified	_SLPVSSIPIY_					0	0	0		nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.702392578125	2	538.305332	1074.59611	-0.76644	-0.00041258	0.63415	0.00034137	-0.13229	-7.121E-05	538.3056700819051	88.762	0.62522	88.592	88.379	89.004	-0.17054					23	14	2	0	0	0	0.03519	1	10877	10877		37.159	16.212	1	151640			73974	5237	51660	51744	81237	81237					0.06179780417301117
SLQAIARII	9	Unmodified	_SLQAIARII_					0	0	0		ENST00000565396.5_1_16:2048235-2048610:-|nuORF;ENST00000567008.1_1_16:2048235-2049192:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2048235-2048610:-|nuORF	ENST00000565396.5_1_16:2048235-2048610:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2872619628906	2	492.813659	983.612765	0.44896	0.00022126	3.6387	0.0017932	4.0876	0.0020144	492.8152162113775	22.502	0.27587	22.3	22.146	22.421	-0.20199					11	5	3	0	0	0	0.02435	1	765	765		51.335	0	1	42949			73975	7754	51661	51745	81238	81238					0.12030326093884014
SLQARLWAL	9	Unmodified	_SLQARLWAL_					0	0	0		ENST00000469740.1_1_X:6069391-6144719:-|nuORF	ENST00000469740.1_1_X:6069391-6144719:-|nuORF	ENST00000469740.1_1_X:6069391-6144719:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7935791015625	2	529.311284	1056.60801	-0.96248	-0.00050945	2.4966	0.0013215	1.5341	0.00081204	529.311960955054	36.972	0.70424	36.753	36.607	37.311	-0.2195					33	17	3	0	0	0	0.024427	1	2977	2977		34.173	14.813	1	449090			73976	14915	51662	51746	81239	81239					0.081974419511198
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.2904052734375	2	544.290745	1086.56694	-0.62826	-0.00034195	-0.018031	-9.814E-06	-0.64629	-0.00035177	544.290789550475	53.993	1.3239	53.993	53.655	54.979	0					60	37	2	0	0	0	0.013946	5	5871	5858;5871;5883;5895;5908		195.05	69.759	1	18717000			73977	1295	51663	51747	81240;81241;81242;81243;81244	81241					0.027116361209891693
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.29052734375	2	544.290745	1086.56694	-0.64948	-0.00035351	-0.023765	-1.2935E-05	-0.67324	-0.00036644	544.2909230679296	54.104	1.5117	53.957	53.456	54.968	-0.14724					106	42	4	0	0	0	0.013946	5	5847	5847;5859;5871;5883;5896		195.05	69.232	1	18997000			73978	1295	51663	51747	81245;81246;81247;81248;81249	81245					0.027116361209891693
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.290771484375	2	544.290745	1086.56694	-0.89754	-0.00048852	-0.29488	-0.0001605	-1.1924	-0.00064902	544.2908114547677	53.719	1.3243	53.814	53.407	54.731	0.095669					111	37	5	0	0	0	0.013719	5	5743	5743;5753;5765;5777;5790		195.05	69.759	1	22409000			73979	1295	51663	51747	81250;81251;81252;81253;81254	81250					0.027116361209891693
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.290745	1086.56694	-0.5338	-0.00029054	1.8791	0.0010228	1.3453	0.00073224	544.2917889373437	54.083	0.37922	53.886	53.827	54.206	-0.19739	-0.02657	0.0020718	NaN	195.05	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1492600			73980	1295	51663	51747							0.027116361209891693
SLQEECDYVQ	10	Unmodified	_SLQEECDYVQ_					0	0	0		nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	nc|ENSG00000114812|P32241-2|VIPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.7398376464844	3	405.172899	1212.49687	0.50365	0.00020406	3.6821	0.0014919	4.1858	0.001696	405.1743231310915	31.411	0.42073	31.226	31.099	31.52	-0.18503					17	10	2	0	0	0	0.03519	1	2117	2117		17.167	0	1	164200			73981	18188	51664	51748	81255	81255					-0.10088030329802677
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2791748046875	2	525.279315	1048.54408	-0.46615	-0.00024486	0.16534	8.6847E-05	-0.30082	-0.00015801	525.2793870231147	87.213	2.2895	87.213	86.605	88.894	0					148	54	5	0	0	0	0.015064	4	10964	10952;10964;10976;10988		190.52	42.572	1	22267000			73982	992	51665	51749	81256;81257;81258;81259	81257					0.02174617003538515
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2793579101562	2	525.279315	1048.54408	0.020502	1.0769E-05	-0.38701	-0.00020329	-0.36651	-0.00019252	525.2791213360451	87.166	2.8951	87.13	85.914	88.809	-0.035355					170	68	5	0	0	0	0.014918	3	10917	10917;10929;10941		205.58	57.539	1	21338000			73983	992	51665	51749	81260;81261;81262	81260					0.02174617003538515
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2791137695312	2	525.279315	1048.54408	0.75796	0.00039814	-1.1222	-0.00058949	-0.36428	-0.00019135	525.278752401954	87.165	2.3796	87.186	86.591	88.97	0.021255					163	56	5	0	0	0	0.014918	4	10882	10870;10882;10894;10906		190.52	63.056	1	20015000			73984	992	51665	51749	81263;81264;81265;81266	81264					0.02174617003538515
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.279315	1048.54408	-0.28044	-0.00014731	0.046906	2.4639E-05	-0.23354	-0.00012267	525.2792918319802	87.228	2.1602	87.049	86.087	88.247	-0.17875	-0.062198	0.00054445	NaN	190.52	113	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8091500			73985	992	51665	51749							0.02174617003538515
SLQEKVQYL	9	Unmodified	_SLQEKVQYL_					0	0	0		nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5;ENST00000492513.5_1_1:93073119-93091404:-|nuORF	nc|ENSG00000067208|O60447|EVI5	nc|ENSG00000067208|O60447|EVI5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.3053588867188	2	554.305864	1106.59717	-0.70234	-0.00038931	0.043664	2.4203E-05	-0.65867	-0.00036511	554.3057907641179	75.8	1.4395	75.556	75.153	76.593	-0.24455					96	37	5	0	0	0	0.59099	1	9305	9305		53.351	0	1	9835000			73986	1356	51666	51750	81267	81267					0.04813994786195508
SLQETIQSL	9	Unmodified	_SLQETIQSL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7734069824219	2	509.774396	1017.53424	-0.58185	-0.00029661	0.42328	0.00021578	-0.15856	-8.0831E-05	509.7744558613907	69.384	0.90127	69.399	69.094	69.995	0.015121					74	21	4	0	0	0	0.035755	2	8293	8281;8293		136.99	18.246	1	2378700			73987	3766	51667	51751	81268;81269	81269					0.026174289981554466
SLQFVTLGGL	10	Unmodified	_SLQFVTLGGL_					0	0	0			REV__ENST00000480296.5_1_3:50386924-50387365:-|nuORF	REV__ENST00000480296.5_1_3:50386924-50387365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.768798828125	2	517.797675	1033.5808	1.3074	0.00067695	-1.7483	-0.00090527	-0.44095	-0.00022832	517.796630478852	59.312	1.7252	59.114	58.747	60.472	-0.19803					71	46	2	0	0	0	0.03519	1	6950	6950		30.318	5.7985	1	2371000	+		73988	33419	51668	51752	81270	81270					0.06534913620112093
SLQKALTF	8	Unmodified	_SLQKALTF_					0	0	0			REV__ENSG00000119638|ENST00000238616|NEK9;REV__ENST00000556170.5_1_14:75553702-75572727:-|nuORF	REV__ENSG00000119638|ENST00000238616|NEK9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.23736572265625	2	454.26601	906.517468	0.37654	0.00017105	-0.094722	-4.3029E-05	0.28181	0.00012802	454.2657189125539	59.136	0.6871	58.954	58.669	59.356	-0.18134					30	16	3	0	0	0	0.027866	1	6532	6532		35.618	3.6634	1	579920	+		73989	22468;35028	51669	51753	81271	81271					0.06046972902845482
SLQKSRPLT	9	Unmodified	_SLQKSRPLT_					0	0	0			REV__nc|ENSG00000128253|O75678-2|RFPL2	REV__nc|ENSG00000128253|O75678-2|RFPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3171997070312	2	515.306198	1028.59784	-0.53729	-0.00027687	0.84648	0.00043619	0.30918	0.00015932	515.3064943388201	32.342	0.57122	32.353	32.023	32.594	0.011799					26	14	3	0	0	0	0.024487	1	2237	2237		17.365	0	1	449640	+		73990	36645	51670	51754	81272	81272					0.08468834225891442
SLQLDKTN	8	Unmodified	_SLQLDKTN_					0	0	0			REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2242431640625	2	459.748182	917.481811	-0.67366	-0.00030972	0.5577	0.0002564	-0.11596	-5.3314E-05	459.74865076595734	26.71	0.55314	26.474	26.197	26.75	-0.23603					22	13	2	0	0	0	0.027866	1	1411	1411		35.618	0	1	241370	+		73991	20262	51671	51755	81273	81273					0.019768906551917098
SLQLIDAAAS	10	Unmodified	_SLQLIDAAAS_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.78216552734375	2	494.769114	987.523675	0.017664	8.7395E-06	0.32209	0.00015936	0.33975	0.0001681	494.7692527063607	65.93	0.41086	65.657	65.464	65.874	-0.27282					24	10	3	0	0	0	0.03519	1	7824	7824		14.137	0	1	459430	+		73992	20777	51672	51756	81274	81274					0.029414463436978622
SLQLRRLP	8	Unmodified	_SLQLRRLP_					0	0	0		ENST00000539131.1_1_12:15095331-15095634:-|nuORF	ENST00000539131.1_1_12:15095331-15095634:-|nuORF	ENST00000539131.1_1_12:15095331-15095634:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.787353515625	2	491.811451	981.608348	-0.87769	-0.00043166	-0.31497	-0.00015491	-1.1927	-0.00058656	491.81105587757264	43.778	0.746	43.633	43.353	44.099	-0.14471					48	20	3	0	0	0	0.027866	1	4101	4101		40.573	0	1	2913400			73993	16396	51673	51757	81275	81275					0.11680861670970444
SLQLRRLP	8	Unmodified	_SLQLRRLP_					0	0	0		ENST00000539131.1_1_12:15095331-15095634:-|nuORF	ENST00000539131.1_1_12:15095331-15095634:-|nuORF	ENST00000539131.1_1_12:15095331-15095634:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	491.811451	981.608348	-0.73055	-0.00035929	-0.3738	-0.00018384	-1.1043	-0.00054313	491.8110330649067	43.614	0.7928	43.614	43.296	44.089	0	-0.029165	0.00015758	NaN	40.573	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2591800			73994	16396	51673	51757							0.11680861670970444
SLQLRRLP	8	Unmodified	_SLQLRRLP_					0	0	0		ENST00000539131.1_1_12:15095331-15095634:-|nuORF	ENST00000539131.1_1_12:15095331-15095634:-|nuORF	ENST00000539131.1_1_12:15095331-15095634:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.811451	981.608348	-0.1387	-6.8216E-05	-0.96418	-0.0004742	-1.1029	-0.00054241	491.81073105212545	43.651	0.75685	43.682	43.413	44.17	0.030827	0.039058	-0.00042313	NaN	40.573	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3046800			73995	16396	51673	51757							0.11680861670970444
SLQNQLINI	9	Unmodified	_SLQNQLINI_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3245239257812	2	521.798206	1041.58186	-0.16819	-8.7761E-05	-1.756	-0.00091628	-1.9242	-0.001004	521.7972128626154	49.701	0.45091	49.55	49.33	49.781	-0.1512					28	11	3	0	0	0	0.022832	1	5131	5131		93.195	0	1	1051100			73996	5695	51674	51758	81276	81276					0.0627312798899311
SLQNTTLQP	9	Unmodified	_SLQNTTLQP_					0	0	0		TMEM74|p.S74T|1|0.31|ENSG00000164841|chr8:108784878-108784878|C/G|missense_variant	TMEM74|p.S74T|1|0.31|ENSG00000164841|chr8:108784878-108784878|C/G|missense_variant	TMEM74|p.S74T|1|0.31|ENSG00000164841|chr8:108784878-108784878|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7830505371094	2	501.266739	1000.51892	-0.20286	-0.00010169	-0.70434	-0.00035306	-0.9072	-0.00045475	501.26630643739117	44.055	0.60603	44.092	43.635	44.241	0.0369					23	16	2	0	0	0	0.024344	1	4133	4133		23.523	0	1	614090			73997	38090	51675	51759	81277	81277					0.01868562200957058
SLQPRLIHR	9	Unmodified	_SLQPRLIHR_					0	0	0		CON__A2I7N3	CON__A2I7N3	CON__A2I7N3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.311279296875	2	560.340907	1118.66726	-0.92553	-0.00051861	-0.27286	-0.00015289	-1.1984	-0.00067151	560.3411360375006	51.709	0.33949	51.561	51.371	51.711	-0.14735					14	9	2	0	0	0	0.024405	1	5497	5497		27.882	1.1893	1	481480		+	73998	479	51676	51760	81278	81278					0.11267337965296065
SLQPRLIHR	9	Unmodified	_SLQPRLIHR_					0	0	0		CON__A2I7N3	CON__A2I7N3	CON__A2I7N3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.340907	1118.66726	0.89809	0.00050324	2.0125	0.0011277	2.9106	0.0016309	560.3419452693297	51.29	0.19821	51.178	51.051	51.249	-0.11163	-0.17239	-0.0032611	NaN	20.947	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84622		+	73999	479	51676	51760							0.11267337965296065
SLQPRLIHR	9	Unmodified	_SLQPRLIHR_					0	0	0		CON__A2I7N3	CON__A2I7N3	CON__A2I7N3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.340907	1118.66726	0.91324	0.00051173	1.042	0.00058388	1.9552	0.0010956	560.3415835679593	51.375	0.19947	51.194	51.062	51.261	-0.18071	-0.15659	-0.0043488	NaN	20.947	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53194		+	74000	479	51676	51760							0.11267337965296065
SLQRFYIPSWP	11	Unmodified	_SLQRFYIPSWP_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.22015380859375	3	465.24695	1392.71902	-0.030532	-1.4205E-05	-0.91856	-0.00042735	-0.94909	-0.00044156	465.5806708210945	33.932	0.24294	33.927	33.869	34.112	-0.0045624					7	5	2	0	0	0	0.02477	1	2474	2474		35.178	16.647	1	52555			74001	3524;15049	51677	51761	81279	81279					0.038370368685491485
SLQRKEEY	8	Unmodified	_SLQRKEEY_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2322387695312	2	526.772188	1051.52982	-0.053564	-2.8216E-05	-0.39879	-0.00021007	-0.45235	-0.00023829	526.7718677106195	50.24	0.45251	50.134	49.894	50.347	-0.10558					21	11	2	0	0	0	0.027866	1	5102	5102		34.173	0	1	868050	+		74002	24122	51678	51762	81280	81280					0.006119645752505676
SLQRRNKV	8	Unmodified	_SLQRRNKV_					0	0	0		ENST00000472267.5_1_6:30587673-30593571:+|nuORF	ENST00000472267.5_1_6:30587673-30593571:+|nuORF	ENST00000472267.5_1_6:30587673-30593571:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27685546875	2	500.804157	999.593761	-0.62963	-0.00031532	2.7979	0.0014012	2.1683	0.0010859	500.8053073368544	60.885	0.67379	60.672	60.457	61.131	-0.21339					41	17	3	0	0	0	0.027866	1	7048	7048		37.159	17.799	1	793470			74003	14986	51679	51763	81281	81281					0.09394789522843894
SLQSGKLVLV	10	Unmodified	_SLQSGKLVLV_					0	0	0			REV__ENSG00000204424|ENST00000375832|LY6G6F	REV__ENSG00000204424|ENST00000375832|LY6G6F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7481079101562	2	522.326599	1042.63865	-0.33092	-0.00017285	0.19311	0.00010087	-0.13781	-7.198E-05	522.326481361056	37.056	0.59385	36.836	36.405	36.999	-0.2195					23	14	2	0	0	0	0.03519	1	2928	2928		49.536	6.6718	1	132490	+		74004	28603	51680	51764	81282	81282					0.1190317554548983
SLQSHIPVL	9	Unmodified	_SLQSHIPVL_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.28924560546875	2	497.290017	992.565481	-0.40679	-0.00020229	-0.45918	-0.00022834	-0.86596	-0.00043064	497.2896351910866	50.644	0.91385	50.725	50.344	51.258	0.08099					81	25	4	0	0	0	0.43973	1	5268	5268		63.306	0	1	4645900			74005	6240	51681	51765	81283	81283					0.06890046822900331
SLQSLIISV	9	Unmodified	_SLQSLIISV_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.L165Ifs*6|1|0.07|ENSG00000162607|chr1:62443254-62443255|-/ATAATAGCACTAAT|frameshift_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2928466796875	2	480.292225	958.569897	0.79244	0.0003806	-0.50092	-0.00024059	0.29152	0.00014002	480.29181884995944	86.766	0.8472	86.766	86.474	87.321	0					46	19	4	0	0	0	0.84115	1	10914	10914		36.447	1.2947	1	663710			74006	6961	51682	51766	81284	81284					0.08895511245827947
SLQSLIISV	9	Unmodified	_SLQSLIISV_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.L165Ifs*6|1|0.07|ENSG00000162607|chr1:62443254-62443255|-/ATAATAGCACTAAT|frameshift_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.29290771484375	2	480.292225	958.569897	0.28694	0.00013781	0.07923	3.8054E-05	0.36617	0.00017587	480.2920296719974	86.76	0.76254	86.715	86.38	87.142	-0.045105					41	17	3	0	0	0	0.30449	1	10866	10866		75.043	5.4157	1	760510			74007	6961	51682	51766	81285	81285					0.08895511245827947
SLQSLIISV	9	Unmodified	_SLQSLIISV_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.L165Ifs*6|1|0.07|ENSG00000162607|chr1:62443254-62443255|-/ATAATAGCACTAAT|frameshift_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2928771972656	2	480.292225	958.569897	0.49843	0.00023939	-0.59056	-0.00028364	-0.092133	-4.4251E-05	480.2917360107491	86.719	0.72736	86.577	86.234	86.962	-0.14218					37	16	3	0	0	0	0.31037	1	10535	10535		74.255	5.4682	1	438870			74008	6961	51682	51766	81286	81286					0.08895511245827947
SLQSLIISV	9	Unmodified	_SLQSLIISV_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.L165Ifs*6|1|0.07|ENSG00000162607|chr1:62443254-62443255|-/ATAATAGCACTAAT|frameshift_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	480.292225	958.569897	-0.0088503	-4.2508E-06	0.23448	0.00011262	0.22563	0.00010837	480.29218125534146	86.732	0.72034	86.753	86.417	87.137	0.021255	0.09122	0.00052909	NaN	75.043	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779620			74009	6961	51682	51766							0.08895511245827947
SLQSLIISV	9	Unmodified	_SLQSLIISV_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.L165Ifs*6|1|0.07|ENSG00000162607|chr1:62443254-62443255|-/ATAATAGCACTAAT|frameshift_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.292225	958.569897	0.46129	0.00022155	-0.50589	-0.00024297	-0.044595	-2.1419E-05	480.2918330674008	86.795	0.84949	86.608	86.254	87.104	-0.18696	-0.054135	-0.00018209	NaN	75.043	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430230			74010	6961	51682	51766							0.08895511245827947
SLQSLIISV	9	Unmodified	_SLQSLIISV_					0	0	0		ENSG00000162607|ENST00000339950|USP1;USP1|p.L165Ifs*6|1|0.07|ENSG00000162607|chr1:62443254-62443255|-/ATAATAGCACTAAT|frameshift_variant	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.292225	958.569897	0.35553	0.00017076	-0.61462	-0.0002952	-0.25909	-0.00012444	480.2918139591546	86.69	0.64303	86.552	86.268	86.911	-0.13734	-0.10957	-0.00028654	NaN	75.043	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495660			74011	6961	51682	51766							0.08895511245827947
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.268798828125	2	459.26875	916.522947	-0.12506	-5.7436E-05	0.010125	4.65E-06	-0.11493	-5.2786E-05	459.2687250831306	75.028	2.1696	75.028	74.509	76.678	0					131	55	6	0	0	0	0.013293	5	9208	9176;9185;9196;9208;9222		221.33	82.501	1	13443000			74012	2444	51683	51767	81287;81288;81289;81290;81291	81290					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2681884765625	2	459.26875	916.522947	-0.08593	-3.9465E-05	-0.13485	-6.1934E-05	-0.22078	-0.0001014	459.268695816955	75.288	1.9635	75.043	74.3	76.263	-0.24455					104	50	5	0	0	0	0.013293	6	9184	9175;9184;9195;9207;9221;9234		176.09	51.493	1	14031000			74013	2444	51683	51767	81292;81293;81294;81295;81296;81297	81293					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.268310546875	2	459.26875	916.522947	0.35764	0.00016425	-0.51956	-0.00023862	-0.16192	-7.4364E-05	459.2684802727913	75.098	1.8093	75.109	74.355	76.165	0.010376					117	46	6	0	0	0	0.014918	6	9105	9105;9115;9125;9137;9151;9165		190.52	59.479	1	13906000			74014	2444	51683	51767	81298;81299;81300;81301;81302;81303	81298					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.268310546875	2	459.26875	916.522947	0.061343	2.8173E-05	0.16041	7.3671E-05	0.22175	0.00010184	459.2687336051772	75.312	1.0963	75.039	74.641	75.737	-0.27266					68	26	4	0	0	0	0.014918	4	8888	8879;8888;8900;8913		162.25	58.7	1	3635900			74015	2444	51683	51767	81304;81305;81306;81307	81305					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.26824951171875	2	459.26875	916.522947	-0.30302	-0.00013917	0.4714	0.0002165	0.16837	7.7328E-05	459.26888522153695	75.228	1.203	74.97	74.695	75.898	-0.25866					62	29	4	0	0	0	0.014918	4	8904	8893;8904;8917;8931		162.25	60.652	1	3952500			74016	2444	51683	51767	81308;81309;81310;81311	81309					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.I110Lfs*5|1|0.32|ENSG00000102910|chr16:48252224-48252224|G/-|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2680358886719	2	459.26875	916.522947	0.37578	0.00017258	-0.24463	-0.00011235	0.13114	6.023E-05	459.2685649614232	75.18	1.5664	75.004	74.48	76.047	-0.17548					77	38	4	0	0	0	0.020687	3	8870	8859;8870;8884		148.99	46.213	1	3264000			74017	2444	51683	51767	81312;81313;81314	81313					0.06134651694674176
SLQWAQTEHLW	11	Unmodified	_SLQWAQTEHLW_					0	0	0		ENST00000429033.1_1_21:32433078-32433324:-|nuORF	ENST00000429033.1_1_21:32433078-32433324:-|nuORF	ENST00000429033.1_1_21:32433078-32433324:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.273681640625	3	466.89821	1397.6728	1.6076	0.00075057	3.7059	0.0017303	5.3134	0.0024808	466.89993535562456	20.699	0.54115	20.768	20.366	20.907	0.068901					22	10	3	0	0	0	0.02484	1	523	523		17.167	0	1	29991			74018	14136	51684	51768	81315	81315					-0.010130280335260977
SLQYKKNQI	9	Unmodified	_SLQYKKNQI_					0	0	0		ENSG00000212916|ENST00000418460|MAP10;MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	ENSG00000212916|ENST00000418460|MAP10	ENSG00000212916|ENST00000418460|MAP10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.2792358398438	2	561.319306	1120.62406	-0.68342	-0.00038362	2.8582	0.0016043	2.1747	0.0012207	561.8225758523431	84.453	1.3115	84.48	83.684	84.996	0.02655					41	30	2	0	0	0	0.02435	1	10530	10530		51.335	3.4199	1	260280			74019	10484	51685	51769	81316	81316					0.06857103397373976
SLQYPNVFWIN	11	Unmodified	_SLQYPNVFWIN_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7825012207031	3	460.903072	1379.68739	-0.39081	-0.00018013	2.7243	0.0012556	2.3335	0.0010755	461.23862097039654	27.527	0.29147	27.527	27.435	27.726	0					10	7	2	0	0	0	0.024779	1	1538	1538		21.78	0	1	87308			74020	4293	51686	51770	81317	81317					0.012730441146231897
SLRAGRPLP	9	Unmodified	_SLRAGRPLP_					0	0	0		ENST00000524906.5_2_8:144650334-144651020:-|nuORF;ENSG00000126107|ENST00000372172|HECTD3	ENST00000524906.5_2_8:144650334-144651020:-|nuORF	ENST00000524906.5_2_8:144650334-144651020:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2948913574219	2	483.795801	965.577048	-0.60341	-0.00029193	4.2114	0.0020375	3.608	0.0017455	483.79738033872434	84.879	0.45851	84.806	84.548	85.007	-0.072769					14	10	2	0	0	0	0.024323	1	10627	10627		44.117	0	1	71525			74021	4180	51687	51771	81318	81318					0.09288288636867037
SLRAIRVLP	9	Unmodified	_SLRAIRVLP_					0	0	0			REV__FGFR3-TACC3|6|fusion	REV__FGFR3-TACC3|6|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8148803710938	2	512.834926	1023.6553	-1.4546	-0.00074598	-2.1437	-0.0010993	-3.5983	-0.0018453	512.8338836630694	60.032	0.22856	60.111	59.936	60.165	0.078888					7	5	2	0	0	0	0.024436	1	6794	6794		30.504	9.5567	1	49426	+		74022	36040	51688	51772	81319	81319					0.14441721222135584
SLRAQSPPV	9	Unmodified	_SLRAQSPPV_					0	0	0		nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3;nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3	nc|ENSG00000140859|Q9BVG8-5|KIFC3	nc|ENSG00000140859|Q9BVG8-5|KIFC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.75921630859375	2	477.771991	953.529429	-0.11513	-5.5007E-05	0.060793	2.9045E-05	-0.054339	-2.5962E-05	477.7719424321158	38.6	0.41959	38.381	38.15	38.569	-0.21849					15	10	3	0	0	0	0.023473	1	3163	3163		85.161	10.906	1	169990			74023	5449	51689	51773	81320	81320					0.0508058964603606
SLRASRVEV	9	Unmodified	_SLRASRVEV_					0	0	0		ENST00000440481.5_1_7:23053545-23053602:-|nuORF;ENST00000432176.6_1_7:23030748-23053665:-|nuORF	ENST00000440481.5_1_7:23053545-23053602:-|nuORF	ENST00000440481.5_1_7:23053545-23053602:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.27911376953125	2	508.795998	1015.57744	-0.72453	-0.00036864	3.8039	0.0019354	3.0793	0.0015668	508.7975855085867	48.219	0.36814	48.066	47.858	48.227	-0.15301					14	10	2	0	0	0	0.02435	1	4850	4850		42.396	10.441	1	191470			74024	14198	51690	51774	81321	81321					0.07027663566088904
SLRCWKLQ	8	Unmodified	_SLRCWKLQ_					0	0	0		ENST00000262644.8_1_8:57876235-57876355:-|nuORF	ENST00000262644.8_1_8:57876235-57876355:-|nuORF	ENST00000262644.8_1_8:57876235-57876355:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2919921875	2	517.284211	1032.55387	0.70885	0.00036668	-2.495	-0.0012906	-1.7862	-0.00092397	517.2825031660072	63.139	0.71809	63.193	62.801	63.519	0.054104					52	18	4	0	0	0	0.027866	1	7242	7242		25.45	4.5032	1	470190			74025	11510	51691	51775	81322	81322					0.03889526527905218
SLRDLLAEV	9	Unmodified	_SLRDLLAEV_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2929382324219	2	508.292756	1014.57096	-0.40836	-0.00020757	0.26047	0.00013239	-0.1479	-7.5176E-05	508.29259265272225	64.653	1.358	64.418	64.021	65.379	-0.2345					89	33	5	0	0	0	0.10174	2	7343	7343;7352		110.12	13.812	1	4590900			74026	1343	51692	51776	81323;81324	81323					0.06425725614701605
SLRDLLAEV	9	Unmodified	_SLRDLLAEV_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2921447753906	2	508.292756	1014.57096	-0.6134	-0.00031179	-0.067349	-3.4233E-05	-0.68075	-0.00034602	508.292723052814	64.683	1.6496	64.48	63.99	65.64	-0.20254					72	40	2	0	0	0	0.2508	1	7361	7361		82.241	10.363	1	4629600			74027	1343	51692	51776	81325	81325					0.06425725614701605
SLRDLLAEV	9	Unmodified	_SLRDLLAEV_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2919006347656	2	508.292756	1014.57096	-0.66552	-0.00033828	-0.024474	-1.244E-05	-0.68999	-0.00035072	508.2927383105903	64.701	1.3521	64.446	64.038	65.39	-0.25563					56	33	2	0	0	0	0.28753	1	7354	7354		77.318	0	1	5339200			74028	1343	51692	51776	81326	81326					0.06425725614701605
SLRDLLAEV	9	Unmodified	_SLRDLLAEV_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.292756	1014.57096	0.24087	0.00012243	-2.3302	-0.0011844	-2.0893	-0.001062	508.29165901502864	64.308	1.0286	64.308	63.954	64.983	0	-0.067771	-0.0022381	NaN	110.12	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1542900			74029	1343	51692	51776							0.06425725614701605
SLRDLLAEV	9	Unmodified	_SLRDLLAEV_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.292756	1014.57096	-0.78076	-0.00039685	-0.7747	-0.00039378	-1.5555	-0.00079063	508.2930577141241	64.507	0.71149	64.244	63.901	64.613	-0.2626	-0.1315	-0.00065678	NaN	110.12	56	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1292400			74030	1343	51692	51776							0.06425725614701605
SLRDLLAEV	9	Unmodified	_SLRDLLAEV_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.292756	1014.57096	0.40788	0.00020732	-1.903	-0.00096726	-1.4951	-0.00075994	508.2923245030344	64.312	1.1115	64.358	63.903	65.015	0.045502	-0.017917	-0.0018037	NaN	110.12	57	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1500800			74031	1343	51692	51776							0.06425725614701605
SLRDVSSID	9	Unmodified	_SLRDVSSID_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2980041503906	2	496.256371	990.498189	-0.072466	-3.5962E-05	-2.5555	-0.0012682	-2.6279	-0.0013041	496.2548525738826	54.726	0.62072	54.726	54.428	55.049	0					41	17	3	0	0	0	0.023817	1	5983	5983		60.972	2.19	1	584690	+		74032	24332	51693	51777	81327	81327					0.0025597182128649365
SLRGDFPVP	9	Unmodified	_SLRGDFPVP_					0	0	0		ENST00000466482.5_1_3:98451275-98491689:+|nuORF	ENST00000466482.5_1_3:98451275-98491689:+|nuORF	ENST00000466482.5_1_3:98451275-98491689:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.77020263671875	2	494.266542	986.51853	0.90481	0.00044722	3.6253	0.0017919	4.5302	0.0022391	494.2709357884696	70.318	0.57788	70.318	70.209	70.787	0					36	13	4	0	0	0	0.62163	1	8513	8513		51.335	3.4199	1	840630			74033	14813	51694	51778	81328	81328					0.024731872717552505
SLRGTRECSVT	11	Unmodified	_SLRGTRECSVT_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.5423278808594	3	403.539916	1207.59792	1.9402	0.00078294	4.3729	0.0017646	6.3131	0.0025476	403.54166797707876	20.056	1.2228	19.856	19.355	20.578	-0.2001					79	24	7	0	0	0	1.0465	1	499	499		23.514	0.13644	1	547780			74034	2791	51695	51779	81329	81329					0.002424661635814118
SLRGVHVPP	9	Unmodified	_SLRGVHVPP_					0	0	0		ENSG00000240445|ENST00000395675|FOXO3B;nc|ENSG00000290687|P0CG31|ZNF286B	ENSG00000240445|ENST00000395675|FOXO3B	ENSG00000240445|ENST00000395675|FOXO3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29766845703125	2	481.282526	960.550499	0.91296	0.00043939	-0.82173	-0.00039548	0.091226	4.3906E-05	481.2820283885023	19.067	0.44555	18.906	18.688	19.134	-0.16079					16	8	3	0	0	0	0.024405	1	389	389		35.618	3.6634	1	132220			74035	10770	51696	51780	81330	81330					0.06864599745551914
SLRGYEIEP	9	Unmodified	_SLRGYEIEP_					0	0	0			REV__CON__Q28065	REV__CON__Q28065	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7846069335938	2	532.274564	1062.53457	-0.9908	-0.00052738	0.77216	0.000411	-0.21865	-0.00011638	532.27487294335	45.153	0.50735	45.153	45.006	45.514	0					22	14	2	0	0	0	0.024418	1	4429	4429		54.776	3.4409	1	540460	+	+	74036	19569	51697	51781	81331	81331					0.0058084871798200766
SLRGYEIEP	9	Unmodified	_SLRGYEIEP_					0	0	0			REV__CON__Q28065	REV__CON__Q28065	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	532.274564	1062.53457	-0.51822	-0.00027584	-1.4546	-0.00077425	-1.9728	-0.0010501	532.2734013188696	45.459	0.37265	45.206	45.019	45.392	-0.25252	0.016852	-0.0014536	NaN	64.207	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209620	+	+	74037	19569	51697	51781							0.0058084871798200766
SLRKAHGT	8	Unmodified	_SLRKAHGT_					0	0	0		ENSG00000181790|ENST00000517894|ADGRB1;ENST00000518812.1_1_8:143624907-143625775:+|nuORF	ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2518615722656	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.0198	1	9948	9948		34.173	3.6689	1	1708300			74038	9071	51698	51782	81332	81332					0.048394536773685104
SLRKEIEY	8	Unmodified	_SLRKEIEY_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2899169921875	2	519.284931	1036.55531	1.1555	0.00060002	-1.2402	-0.00064403	-0.084744	-4.4006E-05	519.2840981438214	51.293	0.54267	51.113	50.797	51.34	-0.18071					44	12	5	0	0	0	0.94517	1	5268	5268		45.952	0	1	2047200	+		74039	26723	51699	51783	81333	81333					0.03849439097643881
SLRKEIEY	8	Unmodified	_SLRKEIEY_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2619018554688	2	519.284931	1036.55531	1.1555	0.00060002	-1.2402	-0.00064403	-0.084744	-4.4006E-05	519.2840981438214	51.293	0.54267	51.113	50.797	51.34	-0.18071					44	12	5	0	0	0	0.027866	1	5273	5273		45.952	10.334	1	2047200	+		74040	26723	51699	51783	81334	81334					0.03849439097643881
SLRKLPMYL	9	Unmodified	_SLRKLPMYL_					0	0	0			REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF	REV__ENST00000606388.5_1_6:146204418-146204589:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2789916992188	2	560.830995	1119.64744	0.41121	0.00023062	-3.6679	-0.0020571	-3.2567	-0.0018264	561.331311434221	84.621	0.46332	84.418	84.124	84.587	-0.20329					14	10	2	0	0	0	0.024447	1	10247	10247		25.574	0	1	111380	+		74041	35933	51700	51784	81335	81335					0.09239825910344734
SLRKMLLSVF	10	Unmodified	_SLRKMLLSVF_					0	0	0			REV__ENST00000442739.1_1_22:21363397-21363730:-|nuORF	REV__ENST00000442739.1_1_22:21363397-21363730:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.3623657226562	2	597.357376	1192.7002	-0.034733	-2.0748E-05	1.9713	0.0011775	1.9365	0.0011568	597.3583204343577	98.637	1.8036	98.633	98.096	99.899	-0.0038834					117	41	4	0	0	0	1.0781	1	12543	12543		35.618	10.044	1	2975900	+		74042	32568	51701	51785	81336	81336					0.11155783973140387
SLRKNQSV	8	Unmodified	_SLRKNQSV_					0	0	0		ENST00000544702.5_1_12:7248989-7252531:-|nuORF;ENSG00000139178|ENST00000266542|C1RL	ENST00000544702.5_1_12:7248989-7252531:-|nuORF	ENST00000544702.5_1_12:7248989-7252531:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.27471923828125	2	466.269616	930.524678	0.88572	0.00041298	3.3052	0.0015411	4.191	0.0019541	466.2709860791975	36.195	0.74179	35.997	35.674	36.416	-0.19829					48	19	4	0	0	0	0.96769	1	2797	2797		42.396	0	1	2614800			74043	5308	51702	51786	81337	81337					0.056637055032865646
SLRKQADL	8	Unmodified	_SLRKQADL_					0	0	0		ENST00000392401.3_1_6:132712937-132713093:-|nuORF	ENST00000392401.3_1_6:132712937-132713093:-|nuORF	ENST00000392401.3_1_6:132712937-132713093:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2925109863281	2	465.771991	929.529429	0.56339	0.00026241	-2.7609	-0.0012859	-2.1975	-0.0010235	465.77172254805583	19.05	0.49526	18.889	18.738	19.233	-0.1608					11	9	2	0	0	0	0.027866	1	412	412		66.429	14.13	1	6831.4			74044	13416	51703	51787	81338	81338					0.06184589646022687
SLRKRQADL	9	Unmodified	_SLRKRQADL_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2575073242188	2	543.822547	1085.63054	-0.50223	-0.00027312	-3.5514	-0.0019313	-4.0536	-0.0022045	543.820477755081	47.548	0.69578	47.451	47.122	47.818	-0.096653					38	18	3	0	0	0	0.024405	1	4632	4632		27.882	0	1	1526600	+		74045	22434	51704	51788	81339	81339					0.09115041348741215
SLRKRSEL	8	Unmodified	_SLRKRSEL_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;ENST00000498179.1_1_X:129054707-129055571:+|nuORF;ENSG00000253797|ENST00000521776|UTP14C	nc|ENSG00000156697|Q9BVJ6-2|UTP14A;ENSG00000253797|ENST00000521776|UTP14C	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7747802734375	2	494.79854	987.582528	0.04092	2.0247E-05	-4.2514	-0.0021036	-4.2105	-0.0020834	494.79678600434477	50.13	0.48922	49.978	49.671	50.16	-0.1512					16	13	2	0	0	0	0.027866	1	5156	5156		51.335	0	1	359860			74046	6545;10869	51705	51789	81340	81340					0.08823967428713786
SLRLAQVQV	9	Unmodified	_SLRLAQVQV_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.3083190917969	2	507.308741	1012.60293	-0.062909	-3.1914E-05	-0.72749	-0.00036906	-0.79039	-0.00040097	507.30830885920216	42.559	0.95621	42.436	41.961	42.917	-0.12299					47	24	3	0	0	0	0.31037	1	3848	3848		74.255	2.3776	1	2093800			74047	6023	51706	51790	81341	81341					0.0971313808852301
SLRLAQVQV	9	Unmodified	_SLRLAQVQV_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.308741	1012.60293	-0.47557	-0.00024126	-0.32233	-0.00016352	-0.7979	-0.00040478	507.30850437206715	42.741	0.80583	42.509	42.079	42.885	-0.23186	0.026794	5.1249E-05	NaN	74.255	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2089800			74048	6023	51706	51790							0.0971313808852301
SLRLAQVQV	9	Unmodified	_SLRLAQVQV_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.308741	1012.60293	-0.62199	-0.00031554	-0.10333	-5.2418E-05	-0.72531	-0.00036796	507.30858483151763	42.728	0.76924	42.502	42.143	42.912	-0.22597	0.01985	0.00027345	NaN	74.255	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1947700			74049	6023	51706	51790							0.0971313808852301
SLRLEVTEF	9	Unmodified	_SLRLEVTEF_					0	0	0		nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.2979125976562	2	547.298039	1092.58152	-1.028	-0.00056265	0.66298	0.00036285	-0.36506	-0.0001998	547.2983358057799	55.416	1.0362	55.27	54.986	56.022	-0.14609					73	28	4	0	0	0	0.091713	2	5951	5951;5964		113.41	27.55	1	7177600			74050	7354	51707	51791	81342;81343	81342					0.0389370826915183
SLRLEVTEF	9	Unmodified	_SLRLEVTEF_					0	0	0		nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2984619140625	2	547.298039	1092.58152	-0.27667	-0.00015142	-0.21341	-0.0001168	-0.49008	-0.00026822	547.297873358046	55.506	1.4654	55.276	54.638	56.103	-0.23087					89	40	4	0	0	0	0.26966	1	5980	5980		79.713	2.9384	1	8285800			74051	7354	51707	51791	81344	81344					0.0389370826915183
SLRLEVTEF	9	Unmodified	_SLRLEVTEF_					0	0	0		nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.2979736328125	2	547.298039	1092.58152	-0.8593	-0.00047029	0.48207	0.00026384	-0.37722	-0.00020645	547.2982576321953	55.467	0.99401	55.251	54.967	55.961	-0.21551					65	27	3	0	0	0	0.12602	3	5945	5934;5945;5957		104.75	3.4939	1	8005400			74052	7354	51707	51791	81345;81346;81347	81346					0.0389370826915183
SLRLMKAF	8	Unmodified	_SLRLMKAF_					0	0	0			REV__ENSG00000158473|ENST00000674085|CD1D	REV__ENSG00000158473|ENST00000674085|CD1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2691955566406	2	483.28368	964.552807	-0.4467	-0.00021588	2.1089	0.0010192	1.6622	0.00080329	483.2843849733336	46.343	0.15178	46.14	46.005	46.157	-0.20226					6	3	2	0	0	0	0.027866	1	4438	4438		25.45	8.0852	1	145730	+		74053	25198	51708	51792	81348	81348					0.06911312159002136
SLRLPYVES	9	Unmodified	_SLRLPYVES_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2931518554688	2	532.292756	1062.57096	0.1591	8.4687E-05	3.9785	0.0021177	4.1376	0.0022024	532.2947852509603	104.13	0.43569	103.96	103.68	104.11	-0.16791					16	10	2	0	0	0	0.77768	1	12953	12953		40.778	2.9666	1	376910			74054	9763	51709	51793	81349	81349					0.042177256146942455
SLRLVHTTG	9	Unmodified	_SLRLVHTTG_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2851257324219	2	492.285266	982.555979	0.12845	6.3233E-05	0.047672	2.3468E-05	0.17612	8.6702E-05	492.2852440981204	93.282	0.93618	93.282	92.751	93.687	0					63	21	4	0	0	0	0.93097	1	11842	11842		30.318	1.1682	1	2432500	+		74055	21046	51710	51794	81350	81350					0.06400278537364557
SLRLVHTTG	9	Unmodified	_SLRLVHTTG_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2852783203125	2	492.285266	982.555979	-0.42242	-0.00020795	0.47536	0.00023401	0.052947	2.6065E-05	492.2854628512751	93.253	1.2091	93.249	92.819	94.028	-0.0042038					66	28	4	0	0	0	0.87448	1	11801	11801		34.173	1.3601	1	2255100	+		74056	21046	51710	51794	81351	81351					0.06400278537364557
SLRLVHTTG	9	Unmodified	_SLRLVHTTG_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.28515625	2	492.285266	982.555979	-0.36272	-0.00017856	0.53464	0.00026319	0.17192	8.4634E-05	492.28549420674483	93.237	1.1339	93.245	92.758	93.892	0.0077286					61	26	4	0	0	0	0.82115	1	11764	11764		37.812	11.015	1	2546900	+		74057	21046	51710	51794	81352	81352					0.06400278537364557
SLRLVHTTG	9	Unmodified	_SLRLVHTTG_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	492.285266	982.555979	0.2043	0.00010057	-0.22472	-0.00011063	-0.020422	-1.0054E-05	492.2850901502164	93.374	1.3877	93.252	92.628	94.016	-0.12215	0.0071431	-0.00054205	NaN	37.812	83	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2999800	+		74058	21046	51710	51794							0.06400278537364557
SLRNRWDEEG	10	Unmodified	_SLRNRWDEEG_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.8822021484375	3	421.202181	1260.58471	-0.60475	-0.00025472	0.81598	0.00034369	0.21123	8.8971E-05	421.20243821032244	35.962	0.62016	35.756	35.506	36.127	-0.20518					29	17	2	0	0	0	0.03519	1	2755	2755		47.228	8.4741	1	486240	+		74059	28289	51711	51795	81353	81353					-0.03515648624147616
SLRNYYEQW	9	Unmodified	_SLRNYYEQW_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	629.7955932617188	2	629.796195	1257.57784	-0.56201	-0.00035395	1.5151	0.00095421	0.95311	0.00060026	629.7968305135721	58.118	1.3163	57.94	57.754	59.07	-0.17776					68	32	3	0	0	0	0.042502	3	6372	6363;6372;6383		131.62	34.977	1	3629300			74060	3933	51712	51796	81354;81355;81356	81355					-0.040649615047414045
SLRNYYEQW	9	Unmodified	_SLRNYYEQW_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	629.7944946289062	2	629.796195	1257.57784	-0.65843	-0.00041468	1.1652	0.00073381	0.50672	0.00031913	629.7968186304828	57.953	1.016	57.762	57.48	58.496	-0.19018					50	25	4	0	0	0	0.027736	4	6363	6343;6352;6363;6378		143.37	29.962	1	6256000			74061	3933	51712	51796	81357;81358;81359;81360	81359					-0.040649615047414045
SLRNYYEQW	9	Unmodified	_SLRNYYEQW_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	629.79541015625	2	629.796195	1257.57784	0.00020515	1.292E-07	0.69158	0.00043555	0.69178	0.00043568	629.7963604839593	58.135	1.2797	57.901	57.624	58.903	-0.23363					64	31	3	0	0	0	0.025498	3	6371	6355;6360;6371		145.16	43.555	1	4146500			74062	3933	51712	51796	81361;81362;81363	81363					-0.040649615047414045
SLRPAEVGL	9	Unmodified	_SLRPAEVGL_					0	0	0			REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2746276855469	2	471.274367	940.53418	0.23728	0.00011183	-0.35717	-0.00016832	-0.11989	-5.6499E-05	471.2741146106928	42.31	0.99088	42.178	41.789	42.78	-0.13219					71	28	4	0	0	0	0.50848	1	3873	3873		58.782	2.0609	1	7100100	+		74063	34431	51713	51797	81364	81364					0.061534737887996016
SLRPLLNKD	9	Unmodified	_SLRPLLNKD_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;ENST00000578955.1_1_18:19057140-19088617:+|nuORF	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7587890625	2	528.314023	1054.61349	-1.2421	-0.00065624	4.3536	0.0023001	3.1115	0.0016438	528.8177566026794	80.672	0.5473	80.521	80.133	80.68	-0.15168					21	12	3	0	0	0	0.024447	1	10015	10015		25.574	14.063	1	106390			74064	5492	51714	51798	81365	81365					0.08837120742941806
SLRPPVLEL	9	Unmodified	_SLRPPVLEL_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.788330078125	2	512.313492	1022.61243	-0.90188	-0.00046205	-4.2677	-0.0021864	-5.1696	-0.0026485	512.3131119753066	45.006	0.149	44.907	44.828	44.977	-0.099445					5	3	2	0	0	0	0.024374	1	4238	4238		40.778	11.629	1	49353	+		74065	28189	51715	51799	81366	81366					0.10202906374036047
SLRPREQL	8	Unmodified	_SLRPREQL_					0	0	0			REV__ENST00000406644.7_1_22:41792013-41792211:+|nuORF	REV__ENST00000406644.7_1_22:41792013-41792211:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.790771484375	2	499.790715	997.566878	-0.72475	-0.00036222	0.23337	0.00011664	-0.49138	-0.00024559	499.79077422265095	29.637	1.0568	29.464	29.113	30.17	-0.17258					46	24	4	0	0	0	0.93274	1	1841	1841		47.916	0	1	4109400	+		74066	31925	51716	51800	81367	81367					0.06799680911649375
SLRPSQVTV	9	Unmodified	_SLRPSQVTV_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;ENST00000465910.5_1_10:50154093-50174894:+|nuORF	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7846374511719	2	493.785099	985.555644	0.32332	0.00015965	-0.35769	-0.00017662	-0.034363	-1.6968E-05	493.78478453528606	56.893	0.55722	56.691	56.404	56.962	-0.20208					42	14	4	0	0	0	0.23085	1	6179	6179		84.916	0	1	4254600			74067	18258	51717	51801	81368	81368					0.06228858817519267
SLRQDLNL	8	Unmodified	_SLRQDLNL_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.769287109375	2	479.769448	957.524344	0.59912	0.00028744	-0.44102	-0.00021159	0.1581	7.5851E-05	479.76887863983865	51.709	1.3949	51.709	50.956	52.351	0					91	38	3	0	0	0	0.38451	2	5489	5489;5513		99.375	9.0051	1	4926300	+		74068	20580	51718	51802	81369;81370	81369					0.04388285783409174
SLRQDLNL	8	Unmodified	_SLRQDLNL_					0	0	0			REV__ENSG00000077063|ENST00000160373|CTTNBP2	REV__ENSG00000077063|ENST00000160373|CTTNBP2	MSMS	OPSCC_39_ClassI_Rep-2	2	479.76898193359375	2	479.769448	957.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.799	1	51.651	51.151	52.151	-0.14735								0	0	0	0.32495	1	5489	5489		79.451	5.196	1		+		74069	20580	51718	51802	81371	81371					0.04388285783409174
SLRQELAAVI	10	Unmodified	_SLRQELAAVI_					0	0	0		nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1	nc|ENSG00000112041|O00294-2|TULP1	nc|ENSG00000112041|O00294-2|TULP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3265991210938	2	550.327131	1098.63971	-0.30481	-0.00016774	-0.41951	-0.00023087	-0.72431	-0.00039861	550.326899312271	51.979	1.001	51.979	51.633	52.634	0					85	26	4	0	0	0	0.75651	2	5536	5536;5558		63.534	5.3039	1	11227000			74070	3166	51719	51803	81372;81373	81372					0.09433389914420331
SLRQELAAVI	10	Unmodified	_SLRQELAAVI_					0	0	0		nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1	nc|ENSG00000112041|O00294-2|TULP1	nc|ENSG00000112041|O00294-2|TULP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.3267211914062	2	550.327131	1098.63971	-0.65209	-0.00035886	-0.0075451	-4.1523E-06	-0.65963	-0.00036301	550.3270581023166	52.08	1.2686	51.933	51.642	52.91	-0.14735					90	33	5	0	0	0	0.75651	2	5552	5539;5552		63.534	13.998	1	11448000			74071	3166	51719	51803	81374;81375	81375					0.09433389914420331
SLRQELAAVI	10	Unmodified	_SLRQELAAVI_					0	0	0		nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1	nc|ENSG00000112041|O00294-2|TULP1	nc|ENSG00000112041|O00294-2|TULP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3274536132812	2	550.327131	1098.63971	-1.2688	-0.00069827	0.48735	0.0002682	-0.78148	-0.00043007	550.3274046393027	51.874	1.4352	51.966	51.615	53.05	0.091942					82	37	3	0	0	0	0.6365	1	5478	5478		72.879	14.097	1	9187200			74072	3166	51719	51803	81376	81376					0.09433389914420331
SLRQHHLQH	9	Unmodified	_SLRQHHLQH_					0	0	0			REV__ENST00000441619.5_1_22:37628955-37640333:-|nuORF	REV__ENST00000441619.5_1_22:37628955-37640333:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.3091430664062	2	578.310138	1154.60572	-1.753	-0.0010138	2.0389	0.0011791	0.28593	0.00016536	578.3112348551637	109.57	0.4404	109.43	109.25	109.69	-0.13821					35	21	2	0	0	0	0.92825	1	13472	13472		30.504	1.3541	1	1541100	+		74073	29487	51720	51804	81377	81377					0.03460406266026439
SLRQSLVL	8	Unmodified	_SLRQSLVL_					0	0	0			REV__ENST00000376592.5_2_1:11849750-11849978:-|nuORF	REV__ENST00000376592.5_2_1:11849750-11849978:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.284912109375	2	458.284734	914.554916	0.99375	0.00045542	-0.88116	-0.00040382	0.11259	5.1597E-05	458.28421345022673	58.911	0.91491	58.911	58.606	59.52	0					68	24	4	0	0	0	0.47665	2	6698	6698;6712		87.754	5.5138	1	5782000	+		74074	31362	51721	51805	81378;81379	81378					0.09422064168461475
SLRQSLVL	8	Unmodified	_SLRQSLVL_					0	0	0			REV__ENST00000376592.5_2_1:11849750-11849978:-|nuORF	REV__ENST00000376592.5_2_1:11849750-11849978:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.28546142578125	2	458.284734	914.554916	0.77934	0.00035716	-0.59285	-0.00027169	0.1865	8.5468E-05	458.2843559382004	58.779	1.1363	58.87	58.333	59.469	0.091217					76	30	4	0	0	0	0.53523	1	6610	6610		82.305	0	1	5457700	+		74075	31362	51721	51805	81380	81380					0.09422064168461475
SLRQWLLL	8	Unmodified	_SLRQWLLL_					0	0	0		nc|ENSG00000188393|Q6UVW9-2|CLEC2A	nc|ENSG00000188393|Q6UVW9-2|CLEC2A	nc|ENSG00000188393|Q6UVW9-2|CLEC2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7739868164062	2	514.816202	1027.61785	0.23106	0.00011895	-0.71111	-0.00036609	-0.48005	-0.00024714	514.8156272987193	69.263	1.1164	69.021	68.666	69.782	-0.24277					33	26	2	0	0	0	0.027866	1	7992	7992		38.806	0	1	412690			74076	18607	51722	51806	81381	81381					0.10514629956514909
SLRRGLNR	8	Unmodified	_SLRRGLNR_					0	0	0			REV__ENSG00000004399|ENST00000324093|PLXND1	REV__ENSG00000004399|ENST00000324093|PLXND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2784729003906	2	486.296499	970.578445	-0.93545	-0.00045491	-2.1657	-0.0010532	-3.1012	-0.0015081	486.2960200285337	50.67	0.24248	50.751	50.642	50.885	0.08099					8	6	2	0	0	0	0.027866	1	5278	5278		7.1934	0	1	100140	+		74077	19777	51723	51807	81382	81382					0.09197922725650187
SLRRLVLD	8	Unmodified	_SLRRLVLD_					0	0	0		nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.30328369140625	2	486.303458	970.592364	-0.23737	-0.00011543	-0.36501	-0.00017751	-0.60238	-0.00029294	486.3032593590347	47.428	1.5784	47.332	46.897	48.475	-0.096653					99	42	5	0	0	0	1.0338	1	4656	4656		31.955	0	1	15954000			74078	4203	51724	51808	81383	81383					0.10589155434081476
SLRRLVLD	8	Unmodified	_SLRRLVLD_					0	0	0		nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3034973144531	2	486.303458	970.592364	0.29385	0.0001429	-0.99079	-0.00048183	-0.69695	-0.00033893	486.3029765935442	47.556	1.5497	47.369	46.966	48.516	-0.18684					93	41	5	0	0	0	0.91239	1	4666	4666		50.025	0	1	15120000			74079	4203	51724	51808	81384	81384					0.10589155434081476
SLRSACNCRC	10	2 Carbamidomethyl (C)	_SLRSACNC(Carbamidomethyl (C))RC(Carbamidomethyl (C))_	SLRSAC(0.095)NC(0.952)RC(0.952)		SLRSAC(-13)NC(13)RC(13)		0	2	0		SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|11|2|sense	SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|11|2|sense	SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|11|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.5097961425781	3	409.511086	1225.51143	0.081553	3.3397E-05	-3.9159	-0.0016036	-3.8344	-0.0015702	409.50969059329896	28.429	0.7451	28.429	28.074	28.82	0					66	17	7	0	0	0	1.0275	1	1669	1669		42.338	6.0204	3	4666400			74080	37996	51725	51809	81385	81385	493;494				-0.09230559934258054
SLRSFPLLL	9	Unmodified	_SLRSFPLLL_					0	0	0			REV__ENST00000379887.8_2_15:72877639-72878143:+|nuORF	REV__ENST00000379887.8_2_15:72877639-72878143:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3235473632812	2	523.32386	1044.63317	0.39218	0.00020524	-1.0253	-0.00053655	-0.63309	-0.00033131	523.3233407921191	71.887	1.2929	71.897	71.318	72.611	0.0097733					110	33	5	0	0	0	0.20967	1	8673	8673		87.754	2.3948	1	15419000	+		74081	31452	51726	51810	81386	81386					0.11263496753713298
SLRSNLYRRD	10	Unmodified	_SLRSNLYRRD_					0	0	0		nc|ENSG00000236320|P0C7P3-2|SLFN14;ENSG00000236320|ENST00000674182|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.3443603515625	2	640.346917	1278.67928	1.0202	0.0006533	-3.5104	-0.0022479	-2.4902	-0.0015946	640.3451500409111	105.2	0.5163	105.2	105.02	105.54	0.00096893					27	16	3	0	0	0	0.96822	1	13476	13476		49.536	1.8787	1	364930			74082	10738	51727	51811	81387	81387					0.0510890991783981
SLRSSEVKV	9	Unmodified	_SLRSSEVKV_					0	0	0		ENST00000522456.1_2_7:27150271-27153348:-|nuORF	ENST00000522456.1_2_7:27150271-27153348:-|nuORF	ENST00000522456.1_2_7:27150271-27153348:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.277099609375	2	502.790381	1003.56621	-0.5442	-0.00027362	4.1684	0.0020958	3.6242	0.0018222	502.79238017746906	64.723	0.84306	64.769	64.486	65.329	0.045502					36	22	2	0	0	0	0.022657	1	7533	7533		67.494	31.047	1	2676500			74083	16028	51728	51812	81388	81388					0.06456841471958796
SLRVHIRY	8	Unmodified	_SLRVHIRY_					0	0	0			REV__ENST00000480540.1_1_14:59261390-59261744:+|nuORF	REV__ENST00000480540.1_1_14:59261390-59261744:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.75830078125	2	522.309075	1042.6036	-0.10193	-5.3239E-05	-0.37421	-0.00019545	-0.47614	-0.00024869	522.3082169718313	41.753	0.74158	41.522	41.157	41.899	-0.2303					47	19	4	0	0	0	0.027866	1	3640	3640		44.531	0.41427	1	541440	+		74084	33424	51729	51813	81389	81389					0.08399977528233649
SLRVIRDL	8	Unmodified	_SLRVIRDL_					0	0	0			REV__ENSG00000176428|ENST00000324941|VPS37D	REV__ENSG00000176428|ENST00000324941|VPS37D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.30657958984375	2	486.303458	970.592364	-0.21374	-0.00010394	3.4801	0.0016924	3.2663	0.0015884	486.3050850120906	72.795	0.9108	72.805	72.529	73.44	0.0096512					54	22	4	0	0	0	1.0009	1	8789	8789		37.159	1.5408	1	1602000	+		74085	27021	51730	51814	81390	81390					0.10589155434081476
SLRWGRARYAR	11	Unmodified	_SLRWGRARYAR_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.750732421875	3	464.597088	1390.76943	-0.006564	-3.0496E-06	1.7363	0.00080668	1.7297	0.00080363	464.59782365811634	42.395	0.96539	42.272	41.718	42.683	-0.12299					78	25	4	0	0	0	0.024757	1	3850	3850		32.034	3.4574	1	1709900			74086	8573	51731	51815	81391	81391					0.08968004036933053
SLRWTPPVPRA	11	Unmodified	_SLRWTPPVPRA_					0	0	0			REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.26617431640625	3	427.247173	1278.71969	-0.45775	-0.00019557	1.6856	0.00072017	1.2279	0.0005246	427.2482303806114	43.62	0.66108	43.383	43.136	43.797	-0.23736					35	17	4	0	0	0	0.024726	1	3990	3990		32.034	5.9707	1	375110	+		74087	34682	51732	51816	81392	81392					0.0914787630824776
SLRWTPPVPRA	11	Unmodified	_SLRWTPPVPRA_					0	0	0			REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	427.247173	1278.71969	-0.55027	-0.0002351	2.0068	0.0008574	1.4565	0.00062229	427.24859260731404	43.664	0.53736	43.445	43.211	43.749	-0.21939	0.076019	0.00073228	NaN	32.034	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355170	+		74088	34682	51732	51816							0.0914787630824776
SLRYLGLYGN	10	Unmodified	_SLRYLGLYGN_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.8103637695312	2	578.31148	1154.60841	0.22833	0.00013204	-2.0464	-0.0011834	-1.8181	-0.0010514	578.3101666613311	109.57	0.35733	109.42	109.29	109.65	-0.14889					32	17	2	0	0	0	1.118	1	13457	13457		30.318	1.1477	1	1649300			74089	6852	51733	51817	81393	81393					0.03728816880334307
SLSAERYCEDD	11	Unmodified	_SLSAERYCEDD_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4;REV__nc|ENSG00000128815|Q6ZS81-3|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	429.2638244628906	3	429.843442	1286.5085	0.27713	0.00011912	-0.70269	-0.00030205	-0.42556	-0.00018292	429.8430807421311	41.625	0.45031	41.49	41.255	41.705	-0.13553					31	11	4	0	0	0	0.024801	1	3701	3701		8.7993	0	1	425140	+		74090	23009;36647	51734	51818	81394	81394					-0.12329833306466753
SLSCMLIH	8	Unmodified	_SLSCMLIH_					0	0	0			REV__ENST00000477288.5_1_6:30882338-30882611:+|nuORF	REV__ENST00000477288.5_1_6:30882338-30882611:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.7774963378906	2	452.224974	902.435394	0.53322	0.00024113	-1.1873	-0.00053693	-0.65409	-0.0002958	452.2241859659569	41.205	0.49701	41.082	40.797	41.294	-0.12317					19	13	2	0	0	0	0.027866	1	3670	3670		46.766	7.7449	1	107120	+		74091	33329	51735	51819	81395	81395					-0.019725887720937862
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7894592285156	2	498.78985	995.565146	0.58399	0.00029129	-0.3553	-0.00017722	0.22869	0.00011407	498.7895333938692	70.05	1.786	70.05	69.629	71.415	0					99	47	3	0	0	0	0.11848	6	8446	8436;8446;8457;8466;8476;8490		106.42	29.569	1	8632600			74092	777	51736	51820	81396;81397;81398;81399;81400;81401	81397					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.790771484375	2	498.78985	995.565146	0.74974	0.00037396	-0.43743	-0.00021819	0.31231	0.00015578	498.78951729568115	70.34	1.8245	70.047	69.673	71.498	-0.29291					113	49	3	0	0	0	0.17455	5	8459	8448;8459;8469;8477;8484		94.006	25.522	1	8205600			74093	777	51736	51820	81402;81403;81404;81405;81406	81403					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7900695800781	2	498.78985	995.565146	-0.10721	-5.3477E-05	0.40637	0.00020269	0.29916	0.00014922	498.7899003988223	70.097	1.8667	70.109	69.751	71.618	0.012421					99	48	3	0	0	0	0.11848	4	8382	8382;8390;8400;8410		106.42	32.44	1	8064700			74094	777	51736	51820	81407;81408;81409;81410	81407					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.79010009765625	2	498.78985	995.565146	-0.2221	-0.00011078	0.18001	8.9786E-05	-0.042089	-2.0993E-05	498.7897899982468	70.327	0.98048	70.055	69.447	70.427	-0.27171					75	24	6	0	0	0	0.10076	2	8193	8180;8193		110.34	33.491	1	7741200			74095	777	51736	51820	81411;81412	81412					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7898254394531	2	498.78985	995.565146	-0.041835	-2.0867E-05	-0.18254	-9.105E-05	-0.22438	-0.00011192	498.7896485641117	70.291	0.88246	70.041	69.441	70.324	-0.25063					77	21	6	0	0	0	0.10076	5	8187	8164;8175;8187;8199;8213		110.34	33.491	1	8419200			74096	777	51736	51820	81413;81414;81415;81416;81417	81415					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.78985595703125	2	498.78985	995.565146	-0.055861	-2.7863E-05	-0.14628	-7.2962E-05	-0.20214	-0.00010083	498.78966313093935	70.172	1.3431	69.958	68.945	70.288	-0.21425					91	32	6	0	0	0	0.17455	3	8158	8148;8158;8171		94.006	11.796	1	7758300			74097	777	51736	51820	81418;81419;81420	81419					0.06718627103043673
SLSDHSLGI	9	Unmodified	_SLSDHSLGI_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7406311035156	2	464.740357	927.46616	0.14215	6.6065E-05	-0.22311	-0.00010369	-0.080954	-3.7622E-05	464.74002429770337	52.836	0.6894	52.688	52.406	53.096	-0.14724					27	17	2	0	0	0	0.06122	1	5651	5651		124.59	31.399	1	1273600			74098	3484	51737	51821	81421	81421					-0.0004739586186133238
SLSDHSLGI	9	Unmodified	_SLSDHSLGI_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.740357	927.46616	-0.50137	-0.000233	0.47879	0.00022251	-0.022572	-1.049E-05	464.74034200675453	52.771	0.61454	52.771	52.472	53.086	0	0.043447	0.0002024	NaN	124.59	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1393300			74099	3484	51737	51821							-0.0004739586186133238
SLSDHSLGI	9	Unmodified	_SLSDHSLGI_					0	0	0		ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	ENSG00000115738|ENST00000396290|ID2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	464.740357	927.46616	0.85971	0.00039954	2.8168	0.0013091	3.6765	0.0017086	464.73971242061424	52.632	0.89249	52.723	52.404	53.297	0.091938	-0.0041386	0.0023756	NaN	124.59	67	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2300200			74100	3484	51737	51821							-0.0004739586186133238
SLSDLLVSL	9	Unmodified	_SLSDLLVSL_					0	0	0		nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7762756347656	2	473.776408	945.538263	0.88556	0.00041956	-1.9791	-0.00093766	-1.0936	-0.0005181	473.7755349332668	98.502	0.94627	98.502	98.233	99.179	0					38	21	3	0	0	0	0.15029	1	12575	12575		99.375	12.44	1	611230			74101	1171	51738	51822	81422	81422					0.06331518491856514
SLSDLLVSL	9	Unmodified	_SLSDLLVSL_					0	0	0		nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.7755126953125	2	473.776408	945.538263	0.76702	0.00036339	-1.951	-0.00092432	-1.184	-0.00056093	473.7757202043876	98.424	0.94422	98.434	98.19	99.135	0.010231					42	21	4	0	0	0	0.25032	1	12534	12534		82.305	16.408	1	484260			74102	1171	51738	51822	81423	81423					0.06331518491856514
SLSDLLVSL	9	Unmodified	_SLSDLLVSL_					0	0	0		nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.7757263183594	2	473.776408	945.538263	0.94728	0.0004488	-1.928	-0.00091346	-0.98075	-0.00046466	473.77554856620804	98.606	0.90131	98.602	98.265	99.166	-0.0038834					39	20	3	0	0	0	0.15029	1	12516	12516		99.375	17.07	1	663690			74103	1171	51738	51822	81424	81424					0.06331518491856514
SLSDLPGFCCL	11	Unmodified	_SLSDLPGFCCL_					0	0	0		ENST00000324432.9_1_7:76091076-76099656:+|nuORF	ENST00000324432.9_1_7:76091076-76099656:+|nuORF	ENST00000324432.9_1_7:76091076-76099656:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.7642822265625	2	577.76466	1153.51477	-0.21493	-0.00012418	-1.0663	-0.00061605	-1.2812	-0.00074023	577.7647424493558	80.029	1.0442	79.81	79.327	80.372	-0.21923					64	24	4	0	0	0	0.782	1	9611	9611		58.782	5.4305	1	597680			74104	12255	51739	51823	81425	81425					-0.05584986608619147
SLSDTVEKL	9	Unmodified	_SLSDTVEKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2692565917969	2	496.268947	990.523341	0.163	8.0893E-05	-0.31718	-0.0001574	-0.15417	-7.6511E-05	496.26866701253743	53.25	0.89748	53.25	52.901	53.799	0					54	24	3	0	0	0	0.03201	2	5751	5751;5764		139.97	40.596	1	6914200			74105	10381	51740	51824	81426;81427	81426					0.02770026623841204
SLSDTVEKL	9	Unmodified	_SLSDTVEKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.26910400390625	2	496.268947	990.523341	-0.80474	-0.00039937	0.63968	0.00031745	-0.16506	-8.1915E-05	496.2691509042576	53.343	0.83778	53.196	52.873	53.711	-0.14724					51	22	3	0	0	0	0.03201	2	5739	5739;5751		139.97	28.322	1	6415500			74106	10381	51740	51824	81428;81429	81428					0.02770026623841204
SLSDTVEKL	9	Unmodified	_SLSDTVEKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2691650390625	2	496.268947	990.523341	-0.2131	-0.00010575	-0.6845	-0.0003397	-0.8976	-0.00044545	496.2688545251904	53.09	0.65045	53.186	52.906	53.556	0.095669					64	17	6	0	0	0	0.03201	2	5653	5653;5666		139.97	31.883	1	6119400			74107	10381	51740	51824	81430;81431	81430					0.02770026623841204
SLSDTVEKL	9	Unmodified	_SLSDTVEKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.268947	990.523341	-0.25506	-0.00012658	0.062452	3.0993E-05	-0.19261	-9.5584E-05	496.2688996422007	53.315	0.62742	53.188	52.913	53.54	-0.12705	-0.030323	1.2867E-05	NaN	139.97	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1014000			74108	10381	51740	51824							0.02770026623841204
SLSDTVEKL	9	Unmodified	_SLSDTVEKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.268947	990.523341	0.016861	8.3676E-06	-0.36272	-0.00018001	-0.34586	-0.00017164	496.2686577876829	53.539	0.55025	53.281	52.961	53.512	-0.25838	0.062408	-0.00040913	NaN	139.97	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1326400			74109	10381	51740	51824							0.02770026623841204
SLSDTVEKL	9	Unmodified	_SLSDTVEKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.268947	990.523341	-0.236	-0.00011712	-0.26372	-0.00013087	-0.49971	-0.00024799	496.2687651776428	53.405	0.59148	53.21	52.899	53.491	-0.19514	-0.0080503	-0.00031087	NaN	139.97	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	996970			74110	10381	51740	51824							0.02770026623841204
SLSEASVTD	9	Unmodified	_SLSEASVTD_					0	0	0			REV__ENSG00000124608|ENST00000244571|AARS2	REV__ENSG00000124608|ENST00000244571|AARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7144470214844	2	454.714005	907.413456	-0.65245	-0.00029668	2.2803	0.0010369	1.6278	0.0007402	454.71487558440253	22.636	0.69899	22.71	22.413	23.112	0.073954					41	14	5	0	0	0	0.75397	1	773	773		42.396	0	1	817270	+		74111	22778	51741	51825	81432	81432					-0.04395398715325882
SLSEKLAAV	9	Unmodified	_SLSEKLAAV_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2687683105469	2	459.26875	916.522947	-0.46174	-0.00021206	1.013	0.00046525	0.5513	0.00025319	459.2691290493807	48.112	0.69985	48.015	47.557	48.257	-0.097553					46	18	3	0	0	0	0.45795	1	4740	4740		62.107	7.3311	1	4953900			74112	18861	51742	51826	81433	81433					0.06134651694662807
SLSEKLAAV	9	Unmodified	_SLSEKLAAV_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2684326171875	2	459.26875	916.522947	-1.0678	-0.00049041	1.5138	0.00069526	0.44603	0.00020485	459.26938495698965	48.439	0.8037	48.163	47.738	48.542	-0.27598					55	21	4	0	0	0	0.19099	3	4781	4771;4781;4791		90.37	8.1293	1	4858700			74113	18861	51742	51826	81434;81435;81436	81435					0.06134651694662807
SLSEKLAAV	9	Unmodified	_SLSEKLAAV_					0	0	0		NCK1-STAG1|1|fusion;NCK1-STAG1|2|fusion;ENST00000482071.1_1_3:136664576-136665812:+|nuORF;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000158092|ENST00000481752|NCK1	NCK1-STAG1|1|fusion	NCK1-STAG1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2685852050781	2	459.26875	916.522947	0.086246	3.961E-05	0.72188	0.00033154	0.80812	0.00037115	459.2690827463652	48.255	1.7426	48.068	47.596	49.339	-0.18684					105	46	3	0	0	0	0.26966	2	4763	4753;4763		79.713	13.283	1	5330000			74114	18861	51742	51826	81437;81438	81438					0.06134651694662807
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.7926635742188	2	557.792589	1113.57063	-0.67889	-0.00037868	-1.7556	-0.00097926	-2.4345	-0.0013579	557.7924820497095	57.651	0.43268	57.474	57.242	57.675	-0.17775					17	10	2	0	0	0	0.26966	1	6320	6320		79.713	5.4575	1	2244000			74115	2800	51743	51827	81439	81439					0.01838305894852965
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.7927856445312	2	557.792589	1113.57063	0.081106	4.5241E-05	-2.7722	-0.0015463	-2.6911	-0.0015011	558.2916390122642	57.634	0.5284	57.444	57.222	57.75	-0.19018					19	13	2	0	0	0	0.26966	1	6313	6313		79.713	10.926	1	2491200			74116	2800	51743	51827	81440	81440					0.01838305894852965
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.792589	1113.57063	-0.042432	-2.3668E-05	-0.54777	-0.00030554	-0.5902	-0.00032921	557.7921585115444	57.535	0.37416	57.535	57.345	57.719	0	0.021013	0.0011925	NaN	79.713	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1126000			74117	2800	51743	51827							0.01838305894852965
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.792589	1113.57063	-0.11898	-6.6367E-05	-0.88094	-0.00049138	-0.99992	-0.00055775	557.7922378565279	57.748	0.55193	57.573	57.307	57.859	-0.1749	0.059202	0.00082082	NaN	79.713	26	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	754150			74118	2800	51743	51827							0.01838305894852965
SLSEKQYFL	9	Unmodified	_SLSEKQYFL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.792589	1113.57063	-0.28441	-0.00015864	-1.0108	-0.00056384	-1.2953	-0.00072248	557.7920491031471	57.336	0.55882	57.432	57.204	57.763	0.095306	-0.082274	0.00067589	NaN	79.713	21	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720210			74119	2800	51743	51827							0.01838305894852965
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2975158691406	2	495.297507	988.580462	-0.25367	-0.00012564	-0.56761	-0.00028114	-0.82128	-0.00040678	495.2972281531602	54.538	1.0702	54.538	54.214	55.284	0					125	30	6	0	0	0	0.016758	3	5947	5947;5959;5971		153.04	14.05	1	63653000			74120	1782	51744	51828	81441;81442;81443	81441					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2976989746094	2	495.297507	988.580462	-0.047163	-2.336E-05	-0.52597	-0.00026051	-0.57314	-0.00028387	495.29723956209665	54.627	1.0767	54.476	54.156	55.232	-0.15036					123	30	6	0	0	0	0.016758	5	5995	5925;5935;5971;5983;5995		153.04	32.415	1	63112000			74121	1782	51744	51828	81444;81445;81446;81447;81448	81448					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2973937988281	2	495.297507	988.580462	0.71523	0.00035425	-1.4039	-0.00069537	-0.68871	-0.00034112	495.29682218928275	54.345	1.0714	54.444	54.077	55.148	0.098011					121	30	6	0	0	0	0.016758	5	5842	5834;5842;5866;5878;5890		153.04	27.222	1	81215000			74122	1782	51744	51828	81449;81450;81451;81452;81453	81450					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2972412109375	2	495.297507	988.580462	-0.62355	-0.00030884	0.0039173	1.9402E-06	-0.61963	-0.0003069	495.29746831426183	54.586	1.0137	54.44	54.077	55.09	-0.14609					93	27	5	0	0	0	0.016758	4	5778	5778;5800;5812;5838		153.04	20.278	1	22581000			74123	1782	51744	51828	81454;81455;81456;81457	81454					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.2971496582031	2	495.297507	988.580462	-0.011885	-5.8864E-06	-0.69506	-0.00034426	-0.70694	-0.00035015	495.2971333216574	54.684	1.009	54.453	54.15	55.159	-0.23087					97	28	5	0	0	0	0.053401	3	5817	5817;5829;5843		127.46	6.8407	1	22934000			74124	1782	51744	51828	81458;81459;81460	81458					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.29742431640625	2	495.297507	988.580462	0.75628	0.00037458	-1.352	-0.00066964	-0.59573	-0.00029506	495.29680380908184	54.621	1.0905	54.414	54.087	55.177	-0.20613					103	29	5	0	0	0	0.016758	4	5799	5777;5787;5799;5823		153.04	19.223	1	20726000			74125	1782	51744	51828	81461;81462;81463;81464	81463					0.08571493900228688
SLSEQGKQL	9	Unmodified	_SLSEQGKQL_					0	0	0		nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000408914.2_1_21:37422526-37423618:+|nuORF;ENSG00000166532|ENST00000535829|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2979736328125	2	495.266739	988.518924	0.30088	0.00014902	-4.0563	-0.002009	-3.7554	-0.0018599	495.2643841486508	54.527	0.28238	54.625	54.525	54.807	0.098015					10	7	2	0	0	0	0.022411	1	5918	5918		101.6	16.685	1	35449			74126	7578	51745	51829	81465	81465					0.024205622009503713
SLSERAPTP	9	Unmodified	_SLSERAPTP_					0	0	0			REV__ENST00000262809.8_1_19:18554062-18554356:-|nuORF	REV__ENST00000262809.8_1_19:18554062-18554356:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.78216552734375	2	479.253631	956.49271	-0.028476	-1.3647E-05	3.0831	0.0014776	3.0547	0.001464	479.2548328133554	58.081	0.38517	57.847	57.501	57.887	-0.23363					13	9	2	0	0	0	0.023239	1	6322	6322		64.207	9.431	1	409750	+		74127	29673	51746	51830	81466	81466					0.012722930294785328
SLSFILVPN	9	Unmodified	_SLSFILVPN_					0	0	0			REV__ENST00000358268.6_2_21:40801131-40817638:-|nuORF	REV__ENST00000358268.6_2_21:40801131-40817638:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.28717041015625	2	495.286943	988.559333	-0.1637	-8.1076E-05	0.43647	0.00021618	0.27278	0.0001351	495.2870535756769	67.459	1.0293	67.225	66.889	67.918	-0.23375					71	24	4	0	0	0	0.6504	1	7752	7752		49.442	13.823	1	5194300	+		74128	30852	51747	51831	81467	81467					0.0645952859136969
SLSFLKNL	8	Unmodified	_SLSFLKNL_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.7549133300781	2	461.273835	920.533118	-0.59239	-0.00027325	0.01876	8.6535E-06	-0.57363	-0.0002646	461.2736487119596	46.351	0.75475	46.149	45.781	46.536	-0.20226					29	20	2	0	0	0	0.027866	1	4447	4447		38.806	13.232	1	249450			74129	5410	51748	51832	81468	81468					0.06967259419900529
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2668151855469	2	495.266739	988.518924	-0.0030206	-1.496E-06	-0.21857	-0.00010825	-0.2216	-0.00010975	495.26659757709797	48.636	1.0926	48.636	48.344	49.437	0					98	30	5	0	0	0	0.013065	2	5008	5008;5033		171.53	45.004	1	13372000			74130	1231	51749	51833	81469;81470	81469					0.024205622009503713
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2663269042969	2	495.266739	988.518924	-0.37526	-0.00018586	0.12947	6.4123E-05	-0.24579	-0.00012173	495.2667624470474	48.818	1.1548	48.665	48.364	49.518	-0.15276					104	31	5	0	0	0	0.14181	1	5051	5051		101.25	19.012	1	10540000			74131	1231	51749	51833	81471	81471					0.024205622009503713
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.26654052734375	2	495.266739	988.518924	-0.42409	-0.00021004	0.17869	8.8499E-05	-0.2454	-0.00012154	495.2668087799557	48.54	1.1927	48.607	48.265	49.458	0.066795					103	32	5	0	0	0	0.015752	2	4927	4927;4939		158.07	70.32	1	10986000			74132	1231	51749	51833	81472;81473	81472					0.024205622009503713
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.266739	988.518924	-1.1207	-0.00055503	0.67715	0.00033537	-0.44353	-0.00021966	495.2669751830594	48.627	0.96745	48.527	48.219	49.186	-0.1008	-0.087184	0.00056883	NaN	171.53	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2166600			74133	1231	51749	51833							0.024205622009503713
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.266739	988.518924	-0.52068	-0.00025788	0.098676	4.8871E-05	-0.42201	-0.00020901	495.266723238733	48.941	0.96494	48.661	48.394	49.359	-0.27977	0.047239	-4.1704E-06	NaN	171.53	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2606700			74134	1231	51749	51833							0.024205622009503713
SLSGELREV	9	Unmodified	_SLSGELREV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.266739	988.518924	-0.30636	-0.00015173	-0.076244	-3.7761E-05	-0.3826	-0.00018949	495.2666150652954	48.769	0.9276	48.587	48.339	49.266	-0.18206	-0.02651	-0.00017743	NaN	171.53	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2035300			74135	1231	51749	51833							0.024205622009503713
SLSGVAHFAF	10	Unmodified	_SLSGVAHFAF_					0	0	0			REV__SLC22A23|p.S548F|1|0.33|ENSG00000137266|chr6:3283912-3283912|G/A|missense_variant	REV__SLC22A23|p.S548F|1|0.33|ENSG00000137266|chr6:3283912-3283912|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8274536132812	2	518.266542	1034.51853	-0.25803	-0.00013373	0.092325	4.7849E-05	-0.16571	-8.588E-05	518.2661906925233	35.141	0.50789	34.925	34.63	35.137	-0.21555					29	12	3	0	0	0	0.03519	1	2627	2627		30.504	8.8179	1	266690	+		74136	37497	51750	51834	81474	81474					0.0026518727172515355
SLSHCHTLLVL	11	Unmodified	_SLSHCHTLLVL_					0	0	0			REV__ENSG00000130766|ENST00000253063|SESN2	REV__ENSG00000130766|ENST00000253063|SESN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.5545654296875	3	408.225269	1221.65398	0.26692	0.00010896	-2.6553	-0.001084	-2.3884	-0.000975	408.2241536162505	34.322	0.55051	34.115	33.895	34.446	-0.20696					19	13	2	0	0	0	0.024732	1	2525	2525		22.562	10.129	1	177970	+		74137	23153	51751	51835	81475	81475					0.05201719071055777
SLSHLVVYVP	10	Unmodified	_SLSHLVVYVP_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;ENST00000482051.5_1_2:197742354-197755557:-|nuORF	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.3001098632812	2	557.318774	1112.623	0.45237	0.00025211	-0.51914	-0.00028932	-0.066769	-3.7212E-05	557.3183977004039	67.707	1.3683	67.73	67.028	68.396	0.02388					80	34	4	0	0	0	0.03519	1	8089	8089		45.952	0	1	820940			74138	9957	51752	51836	81476	81476					0.07118889028470221
SLSHSEGDDDD	11	Unmodified	_SLSHSEGDDDD_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.7387084960938	2	588.718004	1175.42145	-1.2528	-0.00073756	1.5944	0.00093863	0.34155	0.00020108	588.7185838672074	29.188	0.39148	29.016	28.808	29.199	-0.17258					13	8	2	0	0	0	0.024749	1	1751	1751		19.104	4.9664	1	42477			74139	7718	51753	51837	81477	81477					-0.15923916256519988
SLSILLPACAE	11	Unmodified	_SLSILLPACAE_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.8038940429688	2	558.8021	1115.58965	-0.98254	-0.00054905	3.6474	0.0020382	2.6648	0.0014891	558.8040956722554	48.808	1.0189	48.707	48.358	49.377	-0.1008					79	26	5	0	0	0	0.87847	1	4889	4889		52.937	6.9645	1	7840100	+		74140	26629	51754	51838	81478	81478					0.036475191942372476
SLSKFQAIH	9	Unmodified	_SLSKFQAIH_					0	0	0			REV__ENSG00000197110|ENST00000413851|IFNL3	REV__ENSG00000197110|ENST00000413851|IFNL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7091674804688	2	515.787641	1029.56073	-0.097987	-5.0541E-05	-4.078	-0.0021034	-4.1759	-0.0021539	515.7853715939495	29.827	0.75422	29.677	29.213	29.967	-0.14952					41	17	3	0	0	0	0.024427	1	1828	1828		42.396	9.5837	1	627690	+		74141	27598	51755	51839	81479	81479					0.04713162680127425
SLSLAAAKQL	10	Unmodified	_SLSLAAAKQL_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.289306640625	2	501.303124	1000.5917	-0.020374	-1.0214E-05	3.6763	0.0018429	3.6559	0.0018327	501.3048615979686	87.228	0.83444	87.049	86.741	87.575	-0.17875					35	19	3	0	0	0	0.03519	1	10648	10648		98.582	15.832	1	553920			74142	7979	51756	51840	81480	81480					0.09142315994370165
SLSLAAAKQL	10	Unmodified	_SLSLAAAKQL_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2893371582031	2	501.303124	1000.5917	0.46884	0.00023503	2.9639	0.0014858	3.4327	0.0017208	501.3044471803426	87.173	1.0753	87.037	86.761	87.836	-0.13613					46	25	3	0	0	0	0.03519	1	10667	10667		80.455	5.4113	1	383320			74143	7979	51756	51840	81481	81481					0.09142315994370165
SLSLLVSSPL	10	Unmodified	_SLSLLVSSPL_					0	0	0		ENST00000493504.1_1_19:59094431-59094902:+|nuORF	ENST00000493504.1_1_19:59094431-59094902:+|nuORF	ENST00000493504.1_1_19:59094431-59094902:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.8262023925781	2	508.305332	1014.59611	-0.57045	-0.00028996	2.4155	0.0012278	1.8451	0.00093785	508.3067089317889	40.515	0.21563	40.365	40.294	40.51	-0.1497					7	5	2	0	0	0	0.03519	1	3509	3509		19.997	9.7315	1	81107			74144	15505	51757	51841	81482	81482					0.08939780417290422
SLSNFIESV	9	Unmodified	_SLSNFIESV_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2565612792969	2	498.25584	994.497126	-0.043071	-2.146E-05	0.36112	0.00017993	0.31805	0.00015847	498.2558040785162	79.506	0.70933	79.506	79.119	79.828	0					41	16	4	0	0	0	0.062622	1	9857	9857		124.08	13.96	1	1083400			74145	19034	51758	51842	81483	81483					-0.0003424254761057455
SLSNFIESV	9	Unmodified	_SLSNFIESV_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.2561340332031	2	498.25584	994.497126	-1.1287	-0.00056237	1.198	0.00059693	0.069363	3.4561E-05	498.25632819035235	79.626	0.75433	79.454	79.109	79.863	-0.17226					46	17	3	0	0	0	0.016758	1	9844	9844		153.04	4.9929	1	1051400			74146	19034	51758	51842	81484	81484					-0.0003424254761057455
SLSNFIESV	9	Unmodified	_SLSNFIESV_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2554626464844	2	498.25584	994.497126	-0.039741	-1.9801E-05	0.34881	0.0001738	0.30907	0.000154	498.2558519968758	79.436	0.74397	79.455	79.15	79.894	0.018677					42	17	3	0	0	0	0.32811	1	9776	9776		71.877	0.58177	1	1350600			74147	19034	51758	51842	81485	81485					-0.0003424254761057455
SLSNFIESV	9	Unmodified	_SLSNFIESV_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.25584	994.497126	0.54668	0.00027239	-0.49169	-0.00024499	0.054995	2.7402E-05	498.25542345241485	79.59	0.83699	79.344	79.07	79.907	-0.2465	-0.039747	-0.00086329	NaN	153.04	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442410			74148	19034	51758	51842							-0.0003424254761057455
SLSNFIESV	9	Unmodified	_SLSNFIESV_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.25584	994.497126	0.21344	0.00010635	0.31852	0.00015871	0.53196	0.00026505	498.25610745749606	79.483	0.82659	79.264	78.832	79.659	-0.21923	-0.12003	-5.591E-05	NaN	153.04	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476230			74149	19034	51758	51842							-0.0003424254761057455
SLSNFIESV	9	Unmodified	_SLSNFIESV_					0	0	0		RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant;ENSG00000183808|ENST00000520560|RBM12B	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	RBM12B|p.E769Qfs*119|1|0.17|ENSG00000183808|chr8:93734106-93734107|-/TG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.25584	994.497126	-0.052696	-2.6256E-05	0.018706	9.3206E-06	-0.033989	-1.6935E-05	498.25572759658206	79.431	0.7106	79.28	78.943	79.654	-0.15051	-0.10329	-0.00035468	NaN	153.04	34	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499620			74150	19034	51758	51842							-0.0003424254761057455
SLSNKSIDL	9	Unmodified	_SLSNKSIDL_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.752197265625	2	488.769114	975.523675	-0.56905	-0.00027813	0.89639	0.00043813	0.32734	0.00015999	488.76947622522164	28.792	1.0819	28.792	28.044	29.126	-0.00063324					55	25	3	0	0	0	0.024292	1	1738	1738		40.778	0	1	1153000	+		74151	28213	51759	51843	81486	81486					0.034934463437252816
SLSPLTPLV	9	Unmodified	_SLSPLTPLV_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2537841796875	2	463.781493	925.548434	0.44817	0.00020785	1.061	0.00049206	1.5092	0.00069992	463.7813054537564	78.669	1.2833	78.686	77.907	79.19	0.01693					45	30	2	0	0	0	0.024294	1	9656	9656		15.642	0	1	382610	+		74152	24659	51760	51844	81487	81487					0.08268126217092231
SLSPLTPLV	9	Unmodified	_SLSPLTPLV_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.781493	925.548434	-0.29228	-0.00013555	1.3272	0.00061555	1.035	0.00047999	463.7816164091638	78.678	1.2835	78.678	77.918	79.201	0	0.019455	8.7805E-05	NaN	15.642	43	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505020	+		74153	24659	51760	51844							0.08268126217092231
SLSPPAAWH	9	Unmodified	_SLSPPAAWH_					0	0	0			REV__nc|ENSG00000125779|Q9BZ23|PANK2	REV__nc|ENSG00000125779|Q9BZ23|PANK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.268310546875	2	483.245609	964.476666	-0.17688	-8.5474E-05	0.58225	0.00028137	0.40538	0.0001959	483.24609477657646	46.643	0.4868	46.382	46.083	46.569	-0.26118					18	12	2	0	0	0	0.024183	1	4467	4467		60.294	7.3573	1	219410	+		74154	36637	51761	51845	81488	81488					-0.006993684167809988
SLSPRLGQL	9	Unmodified	_SLSPRLGQL_					0	0	0			REV__ENST00000557691.1_1_14:71277363-71281997:+|nuORF	REV__ENST00000557691.1_1_14:71277363-71281997:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.7882995605469	2	485.787641	969.56073	-0.16413	-7.9734E-05	-0.66614	-0.0003236	-0.83028	-0.00040334	485.7873435397639	47.002	1.6887	47.002	46.09	47.779	0					121	47	5	0	0	0	0.16468	1	4695	4695		96.19	0	1	8122600	+		74155	35078	51762	51846	81489	81489					0.07473162680128098
SLSQSGGRHPP	11	Unmodified	_SLSQSGGRHPP_					0	0	0			REV__nc|ENSG00000106384|Q86VF5-2|MOGAT3	REV__nc|ENSG00000106384|Q86VF5-2|MOGAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2662963867188	2	561.786161	1121.55777	-0.35515	-0.00019952	-0.44061	-0.00024753	-0.79576	-0.00044705	561.7857407548072	60.02	0.76262	59.771	59.495	60.258	-0.24842					38	19	3	0	0	0	0.024785	1	6608	6608		37.812	0	1	816420	+		74156	36546	51763	51847	81490	81490					0.0018528755535953678
SLSRAFISAP	10	Unmodified	_SLSRAFISAP_					0	0	0			REV__ENSG00000144619|ENST00000418658|CNTN4	REV__ENSG00000144619|ENST00000418658|CNTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7659301757812	2	524.792924	1047.57129	-1.7347	-0.00091034	2.5699	0.0013487	0.83528	0.00043835	524.7943471904995	30.816	0.66459	30.816	30.508	31.173	0					27	15	3	0	0	0	0.03519	1	2040	2040		54.776	5.3348	1	110510	+		74157	24346	51764	51848	81491	81491					0.04941145334532848
SLSRAFISAP	10	Unmodified	_SLSRAFISAP_					0	0	0			REV__ENSG00000144619|ENST00000418658|CNTN4	REV__ENSG00000144619|ENST00000418658|CNTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7657470703125	2	524.792924	1047.57129	-0.6414	-0.0003366	1.614	0.00084701	0.97259	0.00051041	524.793579096922	30.754	0.66906	30.765	30.457	31.126	0.011501					27	15	3	0	0	0	0.03519	1	2013	2013		87.754	18.967	1	96569	+		74158	24346	51764	51848	81492	81492					0.04941145334532848
SLSRFKLF	8	Unmodified	_SLSRFKLF_					0	0	0		ENST00000373365.4_1_6:38644833-38645052:-|nuORF	ENST00000373365.4_1_6:38644833-38645052:-|nuORF	ENST00000373365.4_1_6:38644833-38645052:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77740478515625	2	499.295102	996.575651	-0.62843	-0.00031377	4.1425	0.0020683	3.5141	0.0017546	499.79611201548414	27.383	0.97257	27.226	26.672	27.645	-0.15664					36	22	3	0	0	0	0.027866	1	1417	1417		44.117	3.5442	1	116770			74159	13075	51765	51849	81493	81493					0.07722654548126684
SLSRFKLF	8	Unmodified	_SLSRFKLF_					0	0	0		ENST00000373365.4_1_6:38644833-38645052:-|nuORF	ENST00000373365.4_1_6:38644833-38645052:-|nuORF	ENST00000373365.4_1_6:38644833-38645052:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.295102	996.575651	-0.47548	-0.0002374	3.7848	0.0018897	3.3093	0.0016523	499.7960202033569	27.066	0.46317	26.898	26.723	27.186	-0.16816	-0.16422	-0.00019246	NaN	44.117	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68520			74160	13075	51765	51849							0.07722654548126684
SLSRLLSAR	9	Unmodified	_SLSRLLSAR_					0	0	0		ENST00000418868.5_1_3:197350234-197354776:-|nuORF	ENST00000418868.5_1_3:197350234-197354776:-|nuORF	ENST00000418868.5_1_3:197350234-197354776:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8178405761719	2	501.806365	1001.59818	-0.50416	-0.00025299	0.8744	0.00043878	0.37024	0.00018579	501.80719487038385	93.566	0.8258	93.561	93.242	94.068	-0.0042038					26	19	2	0	0	0	0.024466	1	11898	11898		39.253	0	1	115410			74161	13945	51766	51850	81494	81494					0.09744253945746095
SLSRLTPL	8	Unmodified	_SLSRLTPL_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.7714538574219	2	443.77146	885.528367	0.34936	0.00015504	-0.15956	-7.081E-05	0.1898	8.4226E-05	443.7712519477878	32.42	0.9615	32.228	31.942	32.904	-0.19261					62	22	5	0	0	0	0.78609	1	2237	2237		60.294	2.4827	1	2546600	+		74162	33403	51767	51851	81495	81495					0.08102375277132978
SLSSALPR	8	Unmodified	_SLSSALPR_					0	0	0			REV__ENST00000600178.5_1_19:39307593-39308076:-|nuORF	REV__ENST00000600178.5_1_19:39307593-39308076:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.70947265625	2	415.74016	829.465767	-0.30917	-0.00012854	1.9443	0.00080832	1.6351	0.00067979	415.74078029925164	26.246	0.16529	26.078	25.988	26.153	-0.16816					6	4	2	0	0	0	0.027866	1	1325	1325		45.972	0	1	53360	+		74163	35842	51768	51852	81496	81496					0.04421229208935529
SLSSFLHGV	9	Unmodified	_SLSSFLHGV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.75299072265625	2	473.753267	945.491981	-0.53781	-0.00025479	0.87887	0.00041637	0.34106	0.00016158	473.7535661387118	66.113	0.77692	65.862	65.603	66.38	-0.25112					41	19	3	0	0	0	0.15889	1	7567	7567		97.473	17.76	1	1232700			74164	732	51769	51853	81497	81497					0.01705498380431436
SLSSFLHGV	9	Unmodified	_SLSSFLHGV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.753267	945.491981	0.41628	0.00019721	-1.1058	-0.00052388	-0.68953	-0.00032667	473.7533608269584	66.114	0.89101	65.841	65.33	66.221	-0.27283	-0.020741	-0.0015736	NaN	97.473	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1055600			74165	732	51769	51853							0.01705498380431436
SLSSFLHGV	9	Unmodified	_SLSSFLHGV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	473.753267	945.491981	0.28849	0.00013667	-3.5263	-0.0016706	-3.2378	-0.0015339	473.7534086003738	65.837	0.81545	65.867	65.382	66.197	0.030106	0.0047762	-0.0038671	NaN	97.473	61	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869180			74166	732	51769	51853							0.01705498380431436
SLSSFLHGV	9	Unmodified	_SLSSFLHGV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.753267	945.491981	0.056718	2.687E-05	0.4542	0.00021518	0.51092	0.00024205	473.7533469030154	66.13	0.71743	65.888	65.583	66.301	-0.24145	0.026271	-9.5529E-05	NaN	97.473	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1096800			74167	732	51769	51853							0.01705498380431436
SLSSFLHGV	9	Unmodified	_SLSSFLHGV_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.753267	945.491981	-0.60415	-0.00028622	1.0635	0.00050385	0.45938	0.00021763	473.7535924834714	66.08	0.60606	65.867	65.588	66.194	-0.21327	0.0050879	0.00048181	NaN	97.473	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049100			74168	732	51769	51853							0.01705498380431436
SLSSLELFL	9	Unmodified	_SLSSLELFL_					0	0	0		nc|ENSG00000123106|Q7Z6B0-3|CCDC91;nc|ENSG00000123106|Q7Z6B0-2|CCDC91;ENST00000535520.5_1_12:28412355-28702103:+|nuORF;ENSG00000123106|ENST00000536442|CCDC91;ENST00000540401.5_1_12:28421609-28702103:+|nuORF	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.7843322753906	2	504.784233	1007.55391	-0.081643	-4.1212E-05	-0.47575	-0.00024015	-0.55739	-0.00028136	504.7839530636181	98.088	1.3622	98.088	97.683	99.045	0					65	31	3	0	0	0	0.15889	2	12533	12533;12557		97.473	5.3982	1	1114600			74169	3957	51770	51854	81498;81499	81498					0.05043805008892832
SLSSLELFL	9	Unmodified	_SLSSLELFL_					0	0	0		nc|ENSG00000123106|Q7Z6B0-3|CCDC91;nc|ENSG00000123106|Q7Z6B0-2|CCDC91;ENST00000535520.5_1_12:28412355-28702103:+|nuORF;ENSG00000123106|ENST00000536442|CCDC91;ENST00000540401.5_1_12:28421609-28702103:+|nuORF	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.7838134765625	2	504.784233	1007.55391	0.22484	0.0001135	-0.6425	-0.00032433	-0.41766	-0.00021083	504.7838027361839	98.018	1.1845	98.028	97.684	98.869	0.010231					63	27	3	0	0	0	0.17455	1	12496	12496		94.006	0	1	1045200			74170	3957	51770	51854	81500	81500					0.05043805008892832
SLSSLELFL	9	Unmodified	_SLSSLELFL_					0	0	0		nc|ENSG00000123106|Q7Z6B0-3|CCDC91;nc|ENSG00000123106|Q7Z6B0-2|CCDC91;ENST00000535520.5_1_12:28412355-28702103:+|nuORF;ENSG00000123106|ENST00000536442|CCDC91;ENST00000540401.5_1_12:28421609-28702103:+|nuORF	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.7842102050781	2	504.784233	1007.55391	0.7232	0.00036506	-1.2119	-0.00061173	-0.48867	-0.00024667	504.78352141815054	98.194	1.3102	98.192	97.68	98.99	-0.0020828					63	30	3	0	0	0	0.17455	2	12472	12472;12485		94.006	13.648	1	1329300			74171	3957	51770	51854	81501;81502	81501					0.05043805008892832
SLSSLELFL	9	Unmodified	_SLSSLELFL_					0	0	0		nc|ENSG00000123106|Q7Z6B0-3|CCDC91;nc|ENSG00000123106|Q7Z6B0-2|CCDC91;ENST00000535520.5_1_12:28412355-28702103:+|nuORF;ENSG00000123106|ENST00000536442|CCDC91;ENST00000540401.5_1_12:28421609-28702103:+|nuORF	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.78460693359375	2	504.784233	1007.55391	0.80019	0.00040393	-1.7014	-0.00085885	-0.90124	-0.00045493	504.7832262567277	97.974	1.7021	97.838	97.195	98.897	-0.13625					72	39	3	0	0	0	0.25032	3	12142	12132;12142;12161		82.305	5.4584	1	1007400			74172	3957	51770	51854	81503;81504;81505	81504					0.05043805008892832
SLSSLELFL	9	Unmodified	_SLSSLELFL_					0	0	0		nc|ENSG00000123106|Q7Z6B0-3|CCDC91;nc|ENSG00000123106|Q7Z6B0-2|CCDC91;ENST00000535520.5_1_12:28412355-28702103:+|nuORF;ENSG00000123106|ENST00000536442|CCDC91;ENST00000540401.5_1_12:28421609-28702103:+|nuORF	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	nc|ENSG00000123106|Q7Z6B0-3|CCDC91	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.7839660644531	2	504.784233	1007.55391	1.0542	0.00053212	-1.9637	-0.00099126	-0.90958	-0.00045914	504.7831573226053	97.927	1.5521	97.803	97.197	98.749	-0.12413					77	36	3	0	0	0	0.31247	2	12107	12107;12145		73.975	5.495	1	1188800			74173	3957	51770	51854	81506;81507	81506					0.05043805008892832
SLSSLVRLN	9	Unmodified	_SLSSLVRLN_					0	0	0		LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant;ENSG00000066557|ENST00000370952|LRRC40	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	LRRC40|p.D553Afs*13|1|0.33|ENSG00000066557|chr1:70148532-70148532|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2748718261719	2	494.792924	987.571294	-0.07334	-3.6288E-05	-3.6933	-0.0018274	-3.7667	-0.0018637	494.79116285430626	62.494	0.87467	62.557	62.401	63.276	0.062767					23	21	2	0	0	0	0.02435	1	7184	7184		34.173	0	1	350170			74174	1341	51771	51855	81508	81508					0.07701145334556259
SLSSLVVQL	9	Unmodified	_SLSSLVVQL_					0	0	0		SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF	SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	SMARCC2|p.E844Kfs*28|1|0.23|ENSG00000139613|chr12:56169621-56169621|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2851867675781	2	473.2844	944.554247	-0.14105	-6.6756E-05	-0.33103	-0.00015667	-0.47208	-0.00022343	473.2841040334205	83.358	0.51415	83.22	82.91	83.424	-0.13861					30	11	4	0	0	0	0.27161	1	10051	10051		79.451	2.6769	1	663340			74175	5345	51772	51856	81509	81509					0.07975224728750163
SLSSPSALNSP	11	Unmodified	_SLSSPSALNSP_					0	0	0		POU2F1-CNTNAP3|2|fusion;POU2F1-CNTNAP3|3|fusion;POU2F1-CNTNAP3|1|fusion;nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1	POU2F1-CNTNAP3|2|fusion	POU2F1-CNTNAP3|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2986450195312	2	530.269478	1058.5244	-0.070885	-3.7588E-05	0.49075	0.00026023	0.41987	0.00022264	530.2697151677668	18.261	0.24633	18.13	17.957	18.203	-0.13147					8	4	2	0	0	0	0.024759	1	253	253		40.058	18.098	1	20685			74176	18981	51773	51857	81510	81510					-0.002517590072557141
SLSSSITK	8	Unmodified	_SLSSSITK_					0	0	0			REV__ENST00000419902.2_1_2:122463345-122485438:+|nuORF	REV__ENST00000419902.2_1_2:122463345-122485438:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.20904541015625	2	411.732	821.449448	-0.1104	-4.5455E-05	1.9479	0.00080202	1.8375	0.00075656	411.73270019876435	41.174	0.43037	40.946	40.729	41.159	-0.2278					17	10	2	0	0	0	0.027866	1	3600	3600		20.947	0	1	159160	+		74177	32151	51774	51858	81511	81511					0.03158103252189903
SLSSSVLPPSF	11	Unmodified	_SLSSSVLPPSF_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7998046875	2	560.797872	1119.58119	-0.19383	-0.0001087	0.66132	0.00037087	0.4675	0.00026217	560.798190042787	16.845	0.84574	16.637	16.418	17.264	-0.20777					39	17	3	0	0	0	1.0521	1	132	132		24.519	0.31644	1	871720			74178	7004	51775	51859	81512	81512					0.02618288549274439
SLSSTVFL	8	Unmodified	_SLSSTVFL_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2369689941406	2	427.236919	852.459284	-0.6108	-0.00026096	2.5001	0.0010682	1.8893	0.0008072	427.2373541874739	30.02	0.20074	30.028	29.922	30.123	0.0086708					6	4	2	0	0	0	0.027866	1	1882	1882		52.299	0	1	26509			74179	624	51776	51860	81513	81513					0.027152912575729715
SLSTFSWLDT	10	Unmodified	_SLSTFSWLDT_					0	0	0		CON__Q0V8M9	CON__Q0V8M9	CON__Q0V8M9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.3058471679688	2	578.779679	1155.5448	-0.97794	-0.00056601	-4.0579	-0.0023486	-5.0358	-0.0029146	578.7772387694745	76.65	0.40892	76.65	76.391	76.799	0					20	9	3	0	0	0	0.03519	1	9431	9431		25.574	2.0514	1	303700		+	74180	535	51777	51861	81514	81514					-0.026745883474404764
SLSTLDLDN	9	Unmodified	_SLSTLDLDN_					0	0	0			REV__ENSG00000128655|ENST00000286063|PDE11A	REV__ENSG00000128655|ENST00000286063|PDE11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2688903808594	2	489.242929	976.471305	-0.53458	-0.00026154	3.1938	0.0015626	2.6592	0.001301	489.24551737177075	41.385	0.19569	41.249	41.099	41.294	-0.13553					7	4	2	0	0	0	0.024477	1	3636	3636		27.882	4.8455	1	53170	+		74181	23004	51778	51862	81515	81515					-0.01787136789903343
SLSTRKTSN	9	Unmodified	_SLSTRKTSN_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7944641113281	2	497.269813	992.525072	-1.2562	-0.00062466	-2.712	-0.0013486	-3.9682	-0.0019733	497.2683527860385	38.988	0.57082	38.823	38.437	39.008	-0.16458					22	15	2	0	0	0	0.024436	1	3241	3241		16.473	4.9621	1	281350	+		74182	25129	51779	51863	81516	81516					0.02851080432458275
SLSTRKTSN	9	Unmodified	_SLSTRKTSN_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.2712707519531	2	497.269813	992.525072	-0.24482	-0.00012174	-3.561	-0.0017708	-3.8058	-0.0018925	497.26795370240916	39.052	0.62033	38.826	38.402	39.022	-0.2257					23	16	2	0	0	0	0.024405	1	3209	3209		20.947	0	1	176770	+		74183	25129	51779	51863	81517	81517					0.02851080432458275
SLSTRLPCL	9	Unmodified	_SLSTRLPCL_					0	0	0			REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2979736328125	2	495.276052	988.537551	-0.47659	-0.00023604	-2.9159	-0.0014442	-3.3925	-0.0016802	495.2744922662529	54.953	1.143	55.051	54.491	55.634	0.098015					79	31	4	0	0	0	0.018983	1	5918	5918		116.9	17.529	1	2035200	+		74184	31895	51780	51864	81518	81518					0.04282400571139533
SLSTRLPCL	9	Unmodified	_SLSTRLPCL_					0	0	0			REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.276052	988.537551	-0.95819	-0.00047457	-2.4058	-0.0011916	-3.364	-0.0016661	495.27474648007717	55.174	0.89182	55.028	54.761	55.653	-0.14609	-0.044383	0.00091717	NaN	116.9	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611720	+		74185	31895	51780	51864							0.04282400571139533
SLSTRLPCL	9	Unmodified	_SLSTRLPCL_					0	0	0			REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.276052	988.537551	-0.11586	-5.7382E-05	-3.221	-0.0015953	-3.3368	-0.0016527	495.2742951274121	55.274	0.87244	55.043	54.711	55.583	-0.23087	-0.029171	0.00010972	NaN	116.9	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	651930	+		74186	31895	51780	51864							0.04282400571139533
SLSTRLPCL	9	Unmodified	_SLSTRLPCL_					0	0	0			REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.276052	988.537551	-0.14598	-7.2302E-05	-3.1374	-0.0015539	-3.2834	-0.0016262	495.2743578708048	55.255	0.81625	55.049	54.758	55.575	-0.20613	-0.023504	0.00019252	NaN	116.9	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691880	+		74187	31895	51780	51864							0.04282400571139533
SLSTRQGQPKV	11	Unmodified	_SLSTRQGQPKV_					0	0	0			REV__ENSG00000163781|ENST00000260810|TOPBP1	REV__ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.8948059082031	3	400.894688	1199.66223	0.13183	5.2849E-05	-0.20951	-8.3991E-05	-0.077681	-3.1142E-05	400.8945992729402	26.463	0.61272	26.44	26.164	26.776	-0.023088					44	14	4	0	0	0	0.98082	1	1354	1354		41.08	2.3265	1	3091900	+		74188	25631	51781	51865	81519	81519					0.07038989312013655
SLSVASAPPQ	10	Unmodified	_SLSVASAPPQ_					0	0	0		ENST00000530879.1_1_8:146024304-146028344:+|nuORF	ENST00000530879.1_1_8:146024304-146028344:+|nuORF	ENST00000530879.1_1_8:146024304-146028344:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	478.756007	955.497461	1.2002	0.00057458	-1.4324	-0.00068576	-0.23222	-0.00011118	478.7551213150779	51.162	0.65257	51.05	50.786	51.438	-0.11163					24	16	3	0	0	0	0.03519	1	5270	5270		47.657	8.4045	1	616250			74189	16247	51782	51866	81520	81520					0.017931771722373924
SLSVNQLYSL	10	Unmodified	_SLSVNQLYSL_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2830810546875	2	562.303321	1122.59209	-0.49604	-0.00027892	-0.71488	-0.00040198	-1.2109	-0.00068091	562.3026917778009	62.376	0.50764	62.117	61.82	62.327	-0.25824					38	12	4	0	0	0	0.03519	1	7013	7013		39.253	3.6345	1	1822700	+		74190	21920	51783	51867	81521	81521					0.035696909235639396
SLSVRGTSFV	10	Unmodified	_SLSVRGTSFV_					0	0	0			REV__ENSG00000142330|ENST00000391984|CAPN10	REV__ENSG00000142330|ENST00000391984|CAPN10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.7903442382812	2	526.790381	1051.56621	-0.42437	-0.00022355	0.052074	2.7432E-05	-0.3723	-0.00019612	526.7903105536759	41.295	0.74488	41.067	40.729	41.474	-0.2278					64	18	5	0	0	0	0.80817	1	3636	3636		60.118	0	1	4600400	+		74191	24151	51784	51868	81522	81522					0.042488414719628054
SLSVSIGYLP	10	Unmodified	_SLSVSIGYLP_					0	0	0			REV__ENSG00000150667|ENST00000350221|FSIP1	REV__ENSG00000150667|ENST00000350221|FSIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.768798828125	2	518.289682	1034.56481	-0.43852	-0.00022728	-0.61956	-0.00032111	-1.0581	-0.00054839	518.2900180526951	66.31	0.54913	66.097	65.794	66.343	-0.21327					29	13	4	0	0	0	0.03519	1	7565	7565		35.618	10.168	1	139690	+		74192	24729	51785	51869	81523	81523					0.04891207383184337
SLTAEQLSHS	10	Unmodified	_SLTAEQLSHS_					0	0	0		ENSG00000131149|ENST00000253458|GSE1;nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1	ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.76904296875	2	536.767103	1071.51965	-0.10563	-5.67E-05	3.4675	0.0018613	3.3619	0.0018046	536.7689990577634	87.091	1.4179	87.112	86.417	87.834	0.021263					62	24	4	0	0	0	0.31896	1	10884	10884		107.01	8.3781	1	4286000			74193	4501	51786	51870	81524	81524					-0.013246431499965183
SLTAKYQPKY	10	Unmodified	_SLTAKYQPKY_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.R338Kfs*5|1|0.2|ENSG00000171320|chr8:27784051-27784052|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.2071533203125	3	400.220401	1197.63937	1.0385	0.00041563	-2.3834	-0.00095387	-1.3449	-0.00053824	400.21934506906183	24.335	1.1197	24.16	23.568	24.688	-0.17484					31	25	2	0	0	0	0.03519	1	984	984		52.167	19.128	1	86097			74194	8140	51787	51871	81525	81525					0.04845970194560323
SLTEAAESVVL	11	Unmodified	_SLTEAAESVVL_					0	0	0			REV__nc|ENSG00000239998|Q8N149-3|LILRA2	REV__nc|ENSG00000239998|Q8N149-3|LILRA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8318481445312	2	559.800611	1117.58667	-0.59668	-0.00033402	-1.8645	-0.0010437	-2.4612	-0.0013778	559.799372441476	73.067	0.70115	73.067	72.698	73.399	0					33	17	3	0	0	0	0.024762	1	8872	8872		30.318	0	1	998570	+		74195	28958	51788	51872	81526	81526					0.03257967341096446
SLTEWHRI	8	Unmodified	_SLTEWHRI_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.30615234375	2	521.277441	1040.54033	-0.55158	-0.00028753	4.3857	0.0022862	3.8342	0.0019987	521.2804086957794	47.142	0.32854	47.142	46.852	47.181	0					14	8	3	0	0	0	0.027866	1	4681	4681		26.796	3.7536	1	487910	+		74196	22148	51789	51873	81527	81527					0.02167992020326892
SLTEWHRI	8	Unmodified	_SLTEWHRI_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.277441	1040.54033	-0.2855	-0.00014882	2.8524	0.0014869	2.5669	0.0013381	521.7807217960263	46.942	0.23552	46.789	46.622	46.858	-0.15301	-0.17697	-0.00086818	NaN	24.203	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54810	+		74197	22148	51789	51873							0.02167992020326892
SLTFTFPYF	9	Unmodified	_SLTFTFPYF_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|20|1|anti-sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.0360973503559685|0.2389077802373403|2.12|518.0|20|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.7337646484375	2	561.778951	1121.54335	-0.054919	-3.0852E-05	1.0947	0.00061501	1.0398	0.00058415	561.7795133788636	78.978	0.54778	78.825	78.517	79.065	-0.15245					22	12	2	0	0	0	0.024535	1	9386	9386		33.516	9.9929	1	129590	+		74198	36220	51790	51874	81528	81528					-0.012561776455413565
SLTGAGLCFLL	11	Unmodified	_SLTGAGLCFLL_					0	0	0		ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3106079101562	2	547.79936	1093.58417	0.13479	7.3839E-05	-1.2501	-0.0006848	-1.1153	-0.00061096	547.7984527589972	68.258	0.55788	68.027	67.637	68.195	-0.23047					16	13	2	0	0	0	0.024743	1	7828	7828		27.882	0	1	125320			74199	2324	51791	51875	81529	81529					0.04111840402447342
SLTGFFGKV	9	Unmodified	_SLTGFFGKV_					0	0	0		ENST00000485035.1_1_3:181328515-181417456:+|nuORF;ENST00000492337.5_1_3:181328352-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7738952636719	2	478.26601	954.517468	0.95156	0.0004551	3.6618	0.0017513	4.6134	0.0022064	478.2674692654258	69.969	0.72623	69.676	69.312	70.038	-0.29292					65	17	6	0	0	0	0.023417	1	8367	8367		49.442	3.4896	1	1415600			74200	15318	51792	51876	81530	81530					0.0383897290286086
SLTGFFGKV	9	Unmodified	_SLTGFFGKV_					0	0	0		ENST00000485035.1_1_3:181328515-181417456:+|nuORF;ENST00000492337.5_1_3:181328352-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	478.26601	954.517468	-0.029842	-1.4272E-05	3.837	0.0018351	3.8071	0.0018208	478.26810485140453	69.928	0.63065	69.66	69.368	69.999	-0.26724	0.025466	-6.4688E-05	NaN	49.442	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142780			74201	15318	51792	51876							0.0383897290286086
SLTGFFGKV	9	Unmodified	_SLTGFFGKV_					0	0	0		ENST00000485035.1_1_3:181328515-181417456:+|nuORF;ENST00000492337.5_1_3:181328352-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	478.26601	954.517468	-0.0020337	-9.7266E-07	3.7779	0.0018068	3.7758	0.0018059	478.26794514319727	69.838	0.78712	69.587	69.276	70.063	-0.25063	-0.04756	-0.00012123	NaN	49.442	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166240			74202	15318	51792	51876							0.0383897290286086
SLTGFFGKV	9	Unmodified	_SLTGFFGKV_					0	0	0		ENST00000485035.1_1_3:181328515-181417456:+|nuORF;ENST00000492337.5_1_3:181328352-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	ENST00000485035.1_1_3:181328515-181417456:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	478.26601	954.517468	0.16786	8.0283E-05	2.7399	0.0013104	2.9077	0.0013907	478.26790455366927	69.768	0.74208	69.545	69.266	70.008	-0.22245	-0.089478	-0.0011141	NaN	49.442	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149700			74203	15318	51792	51876							0.0383897290286086
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.75091552734375	2	457.750724	913.486896	0.55725	0.00025508	-0.41954	-0.00019205	0.13771	6.3035E-05	457.7504212991959	41.83	1.3178	41.83	41.505	42.823	0					68	37	3	0	0	0	0.06122	3	3779	3779;3789;3803		124.59	33.818	1	5081400			74204	8173	51793	51877	81531;81532;81533	81531					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.75091552734375	2	457.750724	913.486896	-0.12174	-5.5727E-05	0.31836	0.00014573	0.19662	9.0005E-05	457.7507634057136	41.999	1.3253	41.867	41.528	42.853	-0.13219					70	37	3	0	0	0	0.072054	3	3801	3789;3801;3815		120.62	16.802	1	5085100			74205	8173	51793	51877	81534;81535;81536	81535					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.7511291503906	2	457.750724	913.486896	0.24316	0.00011131	-0.1342	-6.143E-05	0.10896	4.9875E-05	457.7505941407644	41.952	1.1164	41.978	41.601	42.717	0.026012					63	31	3	0	0	0	0.06122	2	3763	3745;3763		124.59	25.219	1	5224400			74206	8173	51793	51877	81537;81538	81538					0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.750724	913.486896	-0.0067215	-3.0768E-06	0.17642	8.0755E-05	0.1697	7.7679E-05	457.7507509903641	41.924	0.74345	41.802	41.527	42.271	-0.12299	-0.079291	0.00010424	NaN	124.59	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2038400			74207	8173	51793	51877							0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.750724	913.486896	-0.48878	-0.00022374	0.75588	0.000346	0.2671	0.00012226	457.7509600590516	42.127	0.98555	41.895	41.62	42.605	-0.23186	0.014669	0.00063474	NaN	124.59	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2096100			74208	8173	51793	51877							0.02669194517818596
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.750724	913.486896	-0.099999	-4.5775E-05	0.11724	5.3667E-05	0.017241	7.8921E-06	457.7507314553371	42.143	1.059	41.913	41.651	42.71	-0.2303	0.031892	5.0068E-05	NaN	124.59	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2125400			74209	8173	51793	51877							0.02669194517818596
SLTGRLDEV	9	Unmodified	_SLTGRLDEV_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2667236328125	2	495.266739	988.518924	-0.0030206	-1.496E-06	-0.21857	-0.00010825	-0.2216	-0.00010975	495.26659757709797	48.636	1.0926	48.636	48.344	49.437	0					98	30	5	0	0	0	0.016758	3	4994	4964;4976;4994		153.04	41.388	1	13372000			74210	7622	51794	51878	81539;81540;81541	81541					0.024205622009503713
SLTGRLDEV	9	Unmodified	_SLTGRLDEV_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2665100097656	2	495.266739	988.518924	-0.37526	-0.00018586	0.12947	6.4123E-05	-0.24579	-0.00012173	495.2667624470474	48.818	1.1548	48.665	48.364	49.518	-0.15276					104	31	5	0	0	0	0.014918	4	4975	4966;4975;4995;5014		162.25	54.165	1	10540000			74211	7622	51794	51878	81542;81543;81544;81545	81543					0.024205622009503713
SLTGRLDEV	9	Unmodified	_SLTGRLDEV_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;STAT6|p.Q402Pfs*33|1|0.17|ENSG00000166888|chr12:57104473-57104474|-/A|frameshift_variant	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.26641845703125	2	495.266739	988.518924	-0.42409	-0.00021004	0.17869	8.8499E-05	-0.2454	-0.00012154	495.2668087799557	48.54	1.1927	48.607	48.265	49.458	0.066795					103	32	5	0	0	0	0.015064	3	4884	4884;4895;4909		190.52	78.87	1	10986000			74212	7622	51794	51878	81546;81547;81548	81546					0.024205622009503713
SLTIIHPLL	9	Unmodified	_SLTIIHPLL_					0	0	0		ERCC4|p.P550S|1|0.27|ENSG00000175595|chr16:13935580-13935580|C/T|missense_variant	ERCC4|p.P550S|1|0.27|ENSG00000175595|chr16:13935580-13935580|C/T|missense_variant	ERCC4|p.P550S|1|0.27|ENSG00000175595|chr16:13935580-13935580|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2326354980469	2	503.81841	1005.62227	-0.83906	-0.00042273	-0.64231	-0.00032361	-1.4814	-0.00074634	503.81824426496706	44.384	0.48454	44.279	44.064	44.549	-0.10468					21	12	2	0	0	0	0.024506	1	4177	4177		30.504	6.3009	1	194960			74213	17620	51795	51879	81549	81549					0.11968094379426475
SLTIIHPLL	9	Unmodified	_SLTIIHPLL_					0	0	0		ERCC4|p.P550S|1|0.27|ENSG00000175595|chr16:13935580-13935580|C/T|missense_variant	ERCC4|p.P550S|1|0.27|ENSG00000175595|chr16:13935580-13935580|C/T|missense_variant	ERCC4|p.P550S|1|0.27|ENSG00000175595|chr16:13935580-13935580|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.81841	1005.62227	-1.2782	-0.00064397	-0.35718	-0.00017996	-1.6354	-0.00082393	503.8184095230983	44.569	0.36399	44.358	44.15	44.514	-0.21109	0.042892	0.00024896	NaN	16.473	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179230			74214	17620	51795	51879							0.11968094379426475
SLTKLIQNV	9	Unmodified	_SLTKLIQNV_					0	0	0			REV__ENSG00000173163|ENST00000311832|COMMD1	REV__ENSG00000173163|ENST00000311832|COMMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.784912109375	2	508.310949	1014.60735	-0.11738	-5.9666E-05	2.9969	0.0015234	2.8795	0.0014637	508.312249647123	73.094	0.47279	73.104	72.818	73.29	0.0096512					17	11	2	0	0	0	0.024447	1	8799	8799		32.812	7.3622	1	132830	+		74215	26746	51796	51880	81550	81550					0.1006260251143658
SLTKPHSTGPG	11	Unmodified	_SLTKPHSTGPG_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2857666015625	2	541.285463	1080.55637	-0.84008	-0.00045473	0.32536	0.00017611	-0.51472	-0.00027861	541.2856013547815	22.616	1.1568	22.43	21.858	23.015	-0.18539					50	24	3	0	0	0	0.51994	1	808	808		75.043	13.352	1	997860			74216	8885	51797	51881	81551	81551					0.019316534665676954
SLTKPHSTGPG	11	Unmodified	_SLTKPHSTGPG_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2854614257812	2	541.285463	1080.55637	-0.32818	-0.00017764	-0.21731	-0.00011763	-0.54549	-0.00029527	541.2852850005885	22.605	0.9293	22.403	22.048	22.977	-0.20199					50	19	4	0	0	0	0.63824	1	790	790		67.494	11.06	1	930260			74217	8885	51797	51881	81552	81552					0.019316534665676954
SLTLDGVDSTI	11	Unmodified	_SLTLDGVDSTI_					0	0	0			REV__ENST00000260318.6_1_11:107375936-107422548:-|nuORF	REV__ENST00000260318.6_1_11:107375936-107422548:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.7945556640625	2	560.790244	1119.56593	-0.48838	-0.00027388	4.3256	0.0024258	3.8372	0.0021519	560.7929199856609	52.021	1.0645	51.903	51.575	52.64	-0.11876					100	27	5	0	0	0	1.013	1	5425	5425		33.922	3.418	1	19515000	+		74218	23779	51798	51882	81553	81553					0.01093376961443937
SLTLLEDDS	9	Unmodified	_SLTLLEDDS_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.741943359375	2	496.742762	991.470971	-0.88638	-0.0004403	-2.2259	-0.0011057	-3.1123	-0.001546	496.74154445995293	26.281	1.0328	26.045	25.843	26.876	-0.23603					68	27	3	0	0	0	0.83071	1	1405	1405		37.159	4.3467	1	5048200	+		74219	22289	51799	51883	81554	81554					-0.025105565097533145
SLTLRKKPS	9	Unmodified	_SLTLRKKPS_					0	0	0			REV__ENSG00000251493|ENST00000615637|FOXD1	REV__ENSG00000251493|ENST00000615637|FOXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2970581054688	2	515.324391	1028.63423	1.7045	0.00087838	-1.9336	-0.00099642	-0.22905	-0.00011804	515.3232856200733	36.495	0.64196	36.296	36.054	36.696	-0.19829					37	15	3	0	0	0	0.02435	1	2892	2892		42.396	0	1	747290	+		74220	29033	51800	51884	81555	81555					0.1210571112260368
SLTLRRLL	8	Unmodified	_SLTLRRLL_					0	0	0		nc|ENSG00000126216|Q96CW5-3|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2690734863281	2	486.321651	970.62875	-1.0658	-0.00051833	1.6186	0.00078718	0.55282	0.00026885	486.32231876171653	53.394	0.29216	53.49	53.3	53.592	0.095665					11	7	2	0	0	0	0.027866	1	5711	5711		28.254	5.2118	1	94795			74221	4182	51801	51885	81556	81556					0.14226032330805083
SLTLSKLK	8	Unmodified	_SLTLSKLK_					0	0	0			REV__nc|ENSG00000169641|Q86V48-2|LUZP1	REV__nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.2279052734375	2	445.289485	888.564418	-0.30185	-0.00013441	0.31911	0.0001421	0.017259	7.6853E-06	445.28953191661014	26.389	0.44321	26.221	26.019	26.462	-0.16816					21	11	2	0	0	0	0.027866	1	1343	1343		29.15	1.2673	1	241910	+		74222	26389	51802	51886	81557	81557					0.11567832453988558
SLTLSTNALQ	10	Unmodified	_SLTLSTNALQ_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.288330078125	2	524.287671	1046.56079	-0.59781	-0.00031342	1.2841	0.00067325	0.68631	0.00035982	524.2883165896219	28.42	0.92009	28.251	27.807	28.727	-0.16897					56	21	3	0	0	0	1.118	1	1632	1632		30.318	2.4355	1	3614000			74223	1952	51803	51887	81558	81558					0.039371178894725745
SLTPEVHVY	9	Unmodified	_SLTPEVHVY_					0	0	0			REV__nc|ENSG00000129493|Q86XA9|HEATR5A	REV__nc|ENSG00000129493|Q86XA9|HEATR5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7583618164062	2	522.771657	1043.52876	-0.56883	-0.00029737	-0.04261	-2.2275E-05	-0.61144	-0.00031964	522.7711938399835	41.101	0.54238	40.965	40.712	41.255	-0.13553					31	13	4	0	0	0	0.024262	1	3612	3612		57.811	15.415	1	385510	+		74224	23050	51804	51888	81559	81559					0.008737502063468128
SLTPFILID	9	Unmodified	_SLTPFILID_					0	0	0			REV__ENST00000413755.5_1_20:37063786-37063981:-|nuORF	REV__ENST00000413755.5_1_20:37063786-37063981:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3260192871094	2	509.794601	1017.57465	0.59068	0.00030113	4.4583	0.0022728	5.049	0.0025739	510.2965360245258	77.935	0.49364	77.724	77.503	77.997	-0.21087					16	11	2	0	0	0	0.024292	1	9615	9615		58.782	3.2778	1	164530	+		74225	32025	51805	51889	81560	81560					0.06656395388586134
SLTPRYTP	8	Unmodified	_SLTPRYTP_					0	0	0			REV__ENST00000526423.1_1_11:46700589-46702208:-|nuORF	REV__ENST00000526423.1_1_11:46700589-46702208:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.7529602050781	2	467.753267	933.491981	0.71409	0.00033402	-2.0669	-0.00096681	-1.3528	-0.0006328	467.75224136305377	110.51	0.46631	110.52	110.37	110.84	0.0069504					19	11	2	0	0	0	1.0574	1	13931	13931		14.664	2.4572	1	27413	+		74226	34444	51806	51890	81561	81561					0.022574983804247495
SLTQARDL	8	Unmodified	_SLTQARDL_					0	0	0			REV__ENST00000424404.1_1_7:121947107-121947290:+|nuORF	REV__ENST00000424404.1_1_7:121947107-121947290:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2890625	2	452.248349	902.482145	0.94596	0.00042781	4.0042	0.0018109	4.9502	0.0022387	452.25003294179805	55.175	0.98295	55.175	54.944	55.927	0					48	27	2	0	0	0	0.027866	1	6203	6203		24.203	0	1	390850	+		74227	32232	51807	51891	81562	81562					0.027003103750416813
SLTRVEVI	8	Unmodified	_SLTRVEVI_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MSMS	OPSCC_40_ClassI_Rep-1	4	458.7785339355469	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.206	1	70.934	70.434	71.434	-0.27185								0	0	0	0.34661	1	8303	8303		90.777	2.1338	1		+		74228	23780	51808	51892	81563	81563					0.07778357931567825
SLTRYFSN	8	Unmodified	_SLTRYFSN_					0	0	0			REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.78497314453125	2	494.248349	986.482145	0.42513	0.00021012	-0.5318	-0.00026284	-0.10667	-5.2721E-05	494.24803855547395	41.314	0.49337	41.314	41.085	41.579	0					36	13	3	0	0	0	0.027866	1	3718	3718		60.972	8.6728	1	1541400	+		74229	33689	51809	51893	81564	81564					-0.011636896249569872
SLTRYFSN	8	Unmodified	_SLTRYFSN_					0	0	0			REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7852783203125	2	494.248349	986.482145	0.0097757	4.8316E-06	-0.13359	-6.6027E-05	-0.12382	-6.1196E-05	494.2481715642888	41.536	0.49109	41.559	41.29	41.781	0.023006					37	13	3	0	0	0	0.027866	1	3686	3686		60.972	0	1	1437800	+		74230	33689	51809	51893	81565	81565					-0.011636896249569872
SLTRYFSN	8	Unmodified	_SLTRYFSN_					0	0	0			REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.248349	986.482145	-0.49073	-0.00024254	0.016756	8.2818E-06	-0.47397	-0.00023426	494.2481078177234	41.489	0.41616	41.354	41.099	41.515	-0.13553	-0.069503	0.00027393	NaN	60.972	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299820	+		74231	33689	51809	51893							-0.011636896249569872
SLTRYFSN	8	Unmodified	_SLTRYFSN_					0	0	0			REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.248349	986.482145	-0.28606	-0.00014138	-0.21386	-0.0001057	-0.49992	-0.00024708	494.24803136525776	41.656	0.42371	41.428	41.275	41.699	-0.2278	0.0046717	4.5964E-05	NaN	60.972	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255540	+		74232	33689	51809	51893							-0.011636896249569872
SLTRYFSN	8	Unmodified	_SLTRYFSN_					0	0	0			REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	REV__ENST00000489992.5_1_1:154961096-154965253:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.248349	986.482145	-0.20083	-9.9261E-05	-0.44524	-0.00022006	-0.64608	-0.00031932	494.2480215660002	41.74	0.37511	41.509	41.313	41.688	-0.23029	0.086008	-0.00018276	NaN	60.972	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297170	+		74233	33689	51809	51893							-0.011636896249569872
SLTSGLRET	9	Unmodified	_SLTSGLRET_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.7562255859375	2	482.258914	962.503274	-0.10573	-5.0987E-05	-1.336	-0.00064428	-1.4417	-0.00069526	482.25834124903616	52.547	0.6328	52.42	52.039	52.672	-0.12706					28	15	3	0	0	0	0.024427	1	5479	5479		34.173	9.6534	1	546890			74234	9025	51810	51894	81566	81566					0.020522756839113754
SLTSGLRET	9	Unmodified	_SLTSGLRET_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.258914	962.503274	-0.078441	-3.7829E-05	-8.5371	-0.0041171	-8.6155	-0.0041549	482.25460146616103	52.578	0.62363	52.578	52.351	52.974	0	0.070831	-0.0025776	NaN	26.693	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88627			74235	9025	51810	51894							0.020522756839113754
SLTSGLRET	9	Unmodified	_SLTSGLRET_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.258914	962.503274	0.38694	0.00018661	-8.8939	-0.0042892	-8.507	-0.0041026	482.25427702169617	52.672	0.58628	52.524	52.287	52.873	-0.14724	0.017231	-0.0029218	NaN	26.693	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79444			74236	9025	51810	51894							0.020522756839113754
SLTSGLRET	9	Unmodified	_SLTSGLRET_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant;MUC16|p.M8540Efs*2|1|0.16|ENSG00000181143|chr19:8951151-8951152|AT/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	482.258914	962.503274	-0.14806	-7.1404E-05	-7.6505	-0.0036895	-7.7986	-0.0037609	482.2551139916893	52.415	0.65908	52.507	52.28	52.939	0.091938	-0.00052679	-0.0017225	NaN	26.693	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194570			74237	9025	51810	51894							0.020522756839113754
SLTSVVLTL	9	Unmodified	_SLTSVVLTL_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;DHX40-VMP1|1|fusion;DHX40-VMP1|2|fusion	nc|ENSG00000108406|Q8IX18-4|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.78656005859375	2	466.786776	931.558998	1.0848	0.00050637	-1.0039	-0.00046859	0.080937	3.7781E-05	466.78614519500536	86.968	1.1845	86.989	86.417	87.601	0.021263					62	27	3	0	0	0	0.4752	2	10856	10844;10856		60.972	7.6205	1	1344200			74238	2895	51811	51895	81567;81568	81568					0.09048108871525073
SLTTIFRL	8	Unmodified	_SLTTIFRL_					0	0	0			REV__ENST00000468439.2_1_3:132106687-132107131:+|nuORF	REV__ENST00000468439.2_1_3:132106687-132107131:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7869873046875	2	475.78711	949.559667	0.737	0.00035065	-0.87543	-0.00041652	-0.13843	-6.5863E-05	475.7866224351529	85.75	2.0796	85.6	84.582	86.661	-0.14967					104	48	4	0	0	0	0.97924	1	10385	10385		40.573	0	1	4960100	+		74239	33105	51812	51896	81569	81569					0.08286948311229025
SLTTRPVTL	9	Unmodified	_SLTTRPVTL_					0	0	0		ENSG00000126231|ENST00000375547|PROZ;nc|ENSG00000126231|P22891-2|PROZ	ENSG00000126231|ENST00000375547|PROZ	ENSG00000126231|ENST00000375547|PROZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2822265625	2	494.295299	986.576045	-0.68607	-0.00033912	0.63278	0.00031278	-0.053292	-2.6342E-05	494.2952878477173	24.926	0.60966	24.699	24.451	25.061	-0.22683					28	13	3	0	0	0	0.023837	1	1176	1176		74.255	5.4682	1	276800			74240	4186	51813	51897	81570	81570					0.08222029477337855
SLTTRPVTL	9	Unmodified	_SLTTRPVTL_					0	0	0		ENSG00000126231|ENST00000375547|PROZ;nc|ENSG00000126231|P22891-2|PROZ	ENSG00000126231|ENST00000375547|PROZ	ENSG00000126231|ENST00000375547|PROZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2803039550781	2	494.295299	986.576045	1.7656	0.00087274	-2.1617	-0.0010685	-0.3961	-0.00019579	494.2940760935185	24.792	0.52245	24.611	24.418	24.94	-0.18089					26	11	3	0	0	0	0.023837	1	1110	1110		84.916	2.675	1	368300			74241	4186	51813	51897	81571	81571					0.08222029477337855
SLTVILPLSM	10	Unmodified	_SLTVILPLSM_					0	0	0			REV__ENSG00000118946|ENST00000377918|PCDH17	REV__ENSG00000118946|ENST00000377918|PCDH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7581176757812	2	537.317386	1072.62022	-0.91683	-0.00049263	2.4042	0.0012918	1.4873	0.00079917	537.3190985706478	39.222	0.37237	38.999	38.891	39.263	-0.22311					13	9	2	0	0	0	0.03519	1	3340	3340		15.642	0	1	185430	+		74242	22430	51814	51898	81572	81572					0.08681297579300917
SLTVLVSYTFI	11	Unmodified	_SLTVLVSYTFI_					0	0	0		ENSG00000196119|ENST00000284287|OR8A1;nc|ENSG00000196119|Q8NGG7|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.9037170410156	3	414.90419	1241.69074	-0.43738	-0.00018147	-1.6921	-0.00070207	-2.1295	-0.00088354	414.9033883406674	45.077	1.0245	44.928	44.322	45.346	-0.1488					80	29	4	0	0	0	1.0281	1	4335	4335		30.569	1.0181	1	2390600			74243	9822	51815	51899	81573	81573					0.07956294168616296
SLTVLVSYTFI	11	Unmodified	_SLTVLVSYTFI_					0	0	0		ENSG00000196119|ENST00000284287|OR8A1;nc|ENSG00000196119|Q8NGG7|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	414.90419	1241.69074	0.12465	5.172E-05	-2.3369	-0.00096959	-2.2122	-0.00091787	414.9031170326544	44.931	0.99414	44.931	44.348	45.342	0	-0.014748	-0.00038038	NaN	30.569	88	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2310900			74244	9822	51815	51899							0.07956294168616296
SLTVVLVI	8	Unmodified	_SLTVVLVI_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A;SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8184814453125	2	422.281129	842.547705	-0.54412	-0.00022977	-2.2489	-0.00094969	-2.7931	-0.0011795	422.2800436566833	28.269	0.3277	28.1	27.926	28.254	-0.16897					11	7	2	0	0	0	0.027866	1	1613	1613		4.3163	0	1	60306			74245	7814	51816	51900	81574	81574					0.1201333156803912
SLTVVLVI	8	Unmodified	_SLTVVLVI_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A;SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	422.281129	842.547705	-0.17846	-7.5362E-05	-2.9857	-0.0012608	-3.1642	-0.0013362	422.2796550718938	28.32	0.39927	28.169	27.961	28.36	-0.15195	0.034094	-0.00034085	NaN	4.3163	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82467			74246	7814	51816	51900							0.1201333156803912
SLTWAGHLY	9	Unmodified	_SLTWAGHLY_					0	0	0		ENST00000582618.1_1_18:21948255-21957497:-|nuORF	ENST00000582618.1_1_18:21948255-21957497:-|nuORF	ENST00000582618.1_1_18:21948255-21957497:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7505493164062	2	524.266542	1046.51853	-0.31109	-0.0001631	-2.8819	-0.0015109	-3.193	-0.001674	524.2646789021967	39.732	0.59002	39.509	39.225	39.815	-0.22311					19	14	2	0	0	0	0.024436	1	3370	3370		23.042	0	1	262480			74247	17182	51817	51901	81575	81575					-0.0028681272824542248
SLTWRRLI	8	Unmodified	_SLTWRRLI_					0	0	0			REV__ENSG00000132003|ENST00000590508|ZSWIM4	REV__ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7505493164062	2	522.819276	1043.624	-0.45287	-0.00023677	0.11017	5.7597E-05	-0.3427	-0.00017917	522.8188057144721	39.73	0.53914	39.581	39.168	39.707	-0.1497					26	13	4	0	0	0	0.027866	1	3359	3359		35.201	0	1	66131	+		74248	23250	51818	51902	81576	81576					0.10393148188040868
SLVAACVLVL	10	Unmodified	_SLVAACVLVL_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENST00000473577.1_1_13:30091265-30093642:-|nuORF	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.78240966796875	2	494.298996	986.583439	-0.013656	-6.75E-06	0.19896	9.8346E-05	0.1853	9.1595E-05	494.29949361349054	65.884	0.70203	65.612	65.362	66.064	-0.27282					37	18	3	0	0	0	0.03519	1	7861	7861		44.117	0	1	614240			74249	5339	51819	51903	81577	81577					0.0896104575336949
SLVAALLYTR	10	Unmodified	_SLVAALLYTR_					0	0	0			REV__ENST00000259239.7_1_2:131100080-131100272:+|nuORF	REV__ENST00000259239.7_1_2:131100080-131100272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8305053710938	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.0909	1	10926	10926		33.922	1.1092	1	5986700	+		74250	29585	51820	51904	81578	81578					0.10094577919790026
SLVAASLAGVK	11	Unmodified	_SLVAASLAGVK_					0	0	0		ENST00000419152.6_1_8:144676198-144679618:-|nuORF	ENST00000419152.6_1_8:144676198-144679618:-|nuORF	ENST00000419152.6_1_8:144676198-144679618:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2740478515625	2	508.310949	1014.60735	-0.39212	-0.00019932	-0.26399	-0.00013419	-0.65611	-0.00033351	508.31063052564724	44.475	0.60783	44.512	44.209	44.817	0.0369					43	17	3	0	0	0	0.024752	1	4238	4238		19.104	4.2386	1	2099700			74251	13949	51821	51905	81579	81579					0.10062602511413843
SLVADMWPLW	10	Unmodified	_SLVADMWPLW_					0	0	0		ENST00000569825.1_1_16:70287541-70292096:-|nuORF	ENST00000569825.1_1_16:70287541-70292096:-|nuORF	ENST00000569825.1_1_16:70287541-70292096:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	608.8196411132812	2	609.30481	1216.59507	-1.1154	-0.0006796	-2.8257	-0.0017217	-3.9411	-0.0024013	609.3028525489804	63.745	1.6095	63.518	62.81	64.42	-0.22773					48	40	2	0	0	0	0.03519	1	7337	7337		40.778	12.896	1	237680			74252	17011	51822	51906	81580	81580					-0.004567572232872408
SLVAILQSV	9	Unmodified	_SLVAILQSV_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2869567871094	2	465.286943	928.559333	-0.54775	-0.00025486	-1.2982	-0.00060402	-1.8459	-0.00085888	465.28619813513063	89.309	1.1713	89.146	88.765	89.936	-0.1626					55	27	3	0	0	0	0.42604	1	10919	10919		64.207	4.089	1	502640			74253	7488	51823	51907	81581	81581					0.09219528591370363
SLVAILQSV	9	Unmodified	_SLVAILQSV_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.286943	928.559333	0.084058	3.9111E-05	-3.4078	-0.0015856	-3.3238	-0.0015465	465.2852741890713	88.994	0.54582	88.994	88.767	89.313	0	-0.14006	-0.0003975	NaN	64.207	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309890			74254	7488	51823	51907							0.09219528591370363
SLVAILQSV	9	Unmodified	_SLVAILQSV_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.286943	928.559333	0.61878	0.00028791	-3.1997	-0.0014888	-2.5809	-0.0012008	465.2854325034788	89.13	1.053	89.108	88.737	89.79	-0.021645	-0.025543	-0.00020377	NaN	64.207	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303040			74255	7488	51823	51907							0.09219528591370363
SLVAILQSV	9	Unmodified	_SLVAILQSV_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.286943	928.559333	1.0093	0.00046961	-4.391	-0.0020431	-3.3817	-0.0015735	465.28476921381986	89.073	0.50409	89.088	88.838	89.342	0.015907	-0.045444	-0.0013124	NaN	64.207	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291570			74256	7488	51823	51907							0.09219528591370363
SLVAILQSV	9	Unmodified	_SLVAILQSV_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.286943	928.559333	-0.2027	-9.4312E-05	-1.5044	-0.0007	-1.7071	-0.00079431	465.2861653765672	89.306	1.1016	89.179	88.744	89.846	-0.12774	0.044722	0.0013738	NaN	64.207	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586490			74257	7488	51823	51907							0.09219528591370363
SLVAILQSV	9	Unmodified	_SLVAILQSV_					0	0	0		ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	ENSG00000165948|ENST00000555523|IFI27L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.286943	928.559333	0.065727	3.0582E-05	-1.0728	-0.00049915	-1.0071	-0.00046857	465.28625205964846	89.426	1.0579	89.288	88.819	89.877	-0.13761	0.15415	0.0017754	NaN	64.207	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485230			74258	7488	51823	51907							0.09219528591370363
SLVAKELN	8	Unmodified	_SLVAKELN_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7550964355469	2	437.255643	872.496732	-0.45285	-0.00019801	2.0277	0.00088663	1.5749	0.00068862	437.25665840823206	22.946	0.69183	22.761	22.369	23.061	-0.18539					28	14	3	0	0	0	0.027866	1	861	861		79.451	15.244	1	236770			74259	895	51824	51908	81582	81582					0.05538382523184282
SLVALLVAFV	10	Unmodified	_SLVALLVAFV_					0	0	0		nc|ENSG00000263715|P34998-3|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1;ENST00000582766.5_1_17:43884387-43907895:+|nuORF	nc|ENSG00000263715|P34998-3|CRHR1	nc|ENSG00000263715|P34998-3|CRHR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.3135375976562	2	516.328611	1030.64267	-0.058059	-2.9978E-05	-3.1201	-0.001611	-3.1782	-0.001641	516.3267998102849	98.177	0.22	98.011	97.938	98.158	-0.16521					6	5	2	0	0	0	0.03519	1	12155	12155		42.396	6.7778	1	153850			74260	3793	51825	51909	81583	81583					0.12857265039201593
SLVAPDTPIQ	10	Unmodified	_SLVAPDTPIQ_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7844848632812	2	520.784764	1039.55498	-0.065214	-3.3962E-05	-0.92283	-0.00048059	-0.98804	-0.00051456	520.7841460685249	106.45	2.1615	106.44	105.25	107.42	-0.0013199					151	73	4	0	0	0	1.089	2	13648	13620;13648		34.173	0	1	7303900			74261	6602	51826	51910	81584;81585	81585					0.036780193777985914
SLVASCGRLY	10	Unmodified	_SLVASCGRLY_					0	0	0		ENSG00000114648|ENST00000232766|KLHL18;nc|ENSG00000114648|O94889-2|KLHL18	ENSG00000114648|ENST00000232766|KLHL18	ENSG00000114648|ENST00000232766|KLHL18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.7720336914062	2	534.778959	1067.54336	-0.67839	-0.00036279	-3.2339	-0.0017294	-3.9123	-0.0020922	534.7771675687371	63.159	0.79701	62.975	62.704	63.501	-0.18386					35	19	2	0	0	0	1.0002	1	7127	7127		45.972	0.020292	1	5747500			74262	3373	51827	51911	81586	81586					0.012294990828195296
SLVAVYSI	8	Unmodified	_SLVAVYSI_					0	0	0			REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF	REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.24603271484375	2	426.247286	850.48002	0.4124	0.00017578	-3.2057	-0.0013664	-2.7933	-0.0011906	426.2457939199312	86.761	2.0846	86.782	86.157	88.241	0.021263					140	49	6	0	0	0	1.0574	1	10860	10860		24.203	2.5004	1	10449000	+		74263	33484	51828	51912	81587	81587					0.04879881637236849
SLVAVYSI	8	Unmodified	_SLVAVYSI_					0	0	0			REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF	REV__ENST00000482392.1_1_2:232070951-232079819:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2462158203125	2	426.247286	850.48002	0.40347	0.00017198	-3.3338	-0.001421	-2.9303	-0.001249	426.24579574865595	86.946	2.1354	86.809	86.18	88.315	-0.13734					133	50	5	0	0	0	0.99042	1	10542	10542		38.806	6.8513	1	11262000	+		74264	33484	51828	51912	81588	81588					0.04879881637236849
SLVDLARK	8	Unmodified	_SLVDLARK_					0	0	0			REV__IBTK|p.H17R|1|0.09|ENSG00000005700|chr6:82240437-82240437|T/C|missense_variant	REV__IBTK|p.H17R|1|0.09|ENSG00000005700|chr6:82240437-82240437|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7611083984375	2	451.276909	900.539266	-0.89399	-0.00040344	-1.2571	-0.00056729	-2.1511	-0.00097073	451.27659957911845	38.937	0.4173	38.773	38.59	39.008	-0.16458					20	11	3	0	0	0	0.027866	1	3238	3238		25.45	0	1	609690	+		74265	36141	51829	51913	81589	81589					0.08501777651406428
SLVDQSAAL	9	Unmodified	_SLVDQSAAL_					0	0	0		ENST00000506320.1_1_1:115321857-115323228:-|nuORF;ENST00000474562.1_1_1:115321817-115323228:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1	ENST00000506320.1_1_1:115321857-115323228:-|nuORF	ENST00000506320.1_1_1:115321857-115323228:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.2427978515625	2	452.242732	902.470912	1.4986	0.00067772	-1.1573	-0.00052338	0.34127	0.00015434	452.2420887549563	59.785	1.1013	59.785	59.444	60.546	0					66	29	4	0	0	0	0.016584	2	6831	6831;6845		215.39	67.697	1	3026300			74266	1152	51830	51914	81590;81591	81590					0.015774882808955226
SLVDQSAAL	9	Unmodified	_SLVDQSAAL_					0	0	0		ENST00000506320.1_1_1:115321857-115323228:-|nuORF;ENST00000474562.1_1_1:115321817-115323228:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1	ENST00000506320.1_1_1:115321857-115323228:-|nuORF	ENST00000506320.1_1_1:115321857-115323228:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2426452636719	2	452.242732	902.470912	-0.001158	-5.2368E-07	0.41766	0.00018889	0.41651	0.00018836	452.24278075099244	59.944	1.1528	59.743	59.427	60.58	-0.20016					72	30	4	0	0	0	0.016584	3	6829	6829;6841;6854		200.16	65.346	1	3249300			74267	1152	51830	51914	81592;81593;81594	81592					0.015774882808955226
SLVDQSAAL	9	Unmodified	_SLVDQSAAL_					0	0	0		ENST00000506320.1_1_1:115321857-115323228:-|nuORF;ENST00000474562.1_1_1:115321817-115323228:-|nuORF;ENST00000475335.5_1_1:115321747-115323228:-|nuORF;ENSG00000052723|ENST00000060969|SIKE1;nc|ENSG00000052723|Q9BRV8-2|SIKE1	ENST00000506320.1_1_1:115321857-115323228:-|nuORF	ENST00000506320.1_1_1:115321857-115323228:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2427673339844	2	452.242732	902.470912	-0.17853	-8.0741E-05	0.49516	0.00022393	0.31662	0.00014319	452.24284564382043	59.636	1.265	59.722	59.426	60.691	0.085686					77	33	4	0	0	0	0.016584	3	6749	6738;6749;6768		215.39	76.168	1	3136900			74268	1152	51830	51914	81595;81596;81597	81596					0.015774882808955226
SLVEELKL	8	Unmodified	_SLVEELKL_					0	0	0		ENST00000366601.7_3_1:235543386-235564829:+|nuORF	ENST00000366601.7_3_1:235543386-235564829:+|nuORF	ENST00000366601.7_3_1:235543386-235564829:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7774658203125	2	465.778951	929.543348	-0.18378	-8.5601E-05	-3.5688	-0.0016623	-3.7526	-0.0017479	465.7770589296706	81.53	4.4485	81.399	79.15	83.599	-0.13075					270	106	3	0	0	0	0.94517	1	9997	9997		45.952	0	1	1253000			74269	12819	51831	51915	81598	81598					0.07575822354453976
SLVEKVDLD	9	Unmodified	_SLVEKVDLD_					0	0	0		ENST00000509764.1_1_4:71891631-71892511:+|nuORF	ENST00000509764.1_1_4:71891631-71892511:+|nuORF	ENST00000509764.1_1_4:71891631-71892511:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.30181884765625	2	509.276772	1016.53899	0.096227	4.9006E-05	1.7264	0.00087921	1.8226	0.00092822	509.2774454844518	56.642	0.59215	56.417	55.99	56.582	-0.2248					23	14	2	0	0	0	0.024288	1	6078	6078		62.107	10.915	1	360000			74270	15809	51832	51916	81599	81599					0.031383131409029374
SLVFENKVN	9	Unmodified	_SLVFENKVN_					0	0	0		nc|ENSG00000204179|Q4JDL3-3|PTPN20;nc|ENSG00000204179|Q4JDL3-12|PTPN20	nc|ENSG00000204179|Q4JDL3-3|PTPN20;nc|ENSG00000204179|Q4JDL3-12|PTPN20	nc|ENSG00000204179|Q4JDL3-12|PTPN20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2842407226562	2	525.284931	1048.55531	-0.76412	-0.00040138	1.7785	0.00093419	1.0143	0.00053281	525.2853402923132	55.065	0.93704	55.164	54.807	55.744	0.098015					41	25	2	0	0	0	0.64897	1	6007	6007		49.536	0.094497	1	2659300			74271	18657;18656	51833	51917	81600	81600					0.03297439097673305
SLVFSLVMD	9	Unmodified	_SLVFSLVMD_					0	0	0		ENST00000460934.1_1_1:205628364-205631520:-|nuORF;ENSG00000158715|ENST00000367145|SLC45A3	ENST00000460934.1_1_1:205628364-205631520:-|nuORF	ENST00000460934.1_1_1:205628364-205631520:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7649230957031	2	505.764986	1009.51542	-0.55987	-0.00028316	0.65276	0.00033014	0.092892	4.6982E-05	505.7651348962669	80.116	0.88266	80.138	79.771	80.654	0.021439					67	20	4	0	0	0	0.35646	1	9894	9894		68.787	0.30212	1	4493200			74272	6697	51834	51918	81601	81601					0.011041761027399843
SLVFTALNP	9	Unmodified	_SLVFTALNP_					0	0	0			REV__ENSG00000135776|ENST00000344517|ABCB10	REV__ENSG00000135776|ENST00000344517|ABCB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2977294921875	2	481.271293	960.528032	0.7467	0.00035936	-3.7872	-0.0018227	-3.0405	-0.0014633	481.269527917386	19.398	0.49463	19.237	19.034	19.529	-0.16079					15	9	2	0	0	0	0.024427	1	400	400		42.396	26.754	1	83462	+		74273	23579	51835	51919	81602	81602					0.046189555572595964
SLVFWRRKWLR	11	Unmodified	_SLVFWRRKWLR_					0	0	0			REV__ENSG00000105559|ENST00000263265|PLEKHA4	REV__ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3096923828125	3	516.308767	1545.90447	-0.13036	-6.7306E-05	2.9449	0.0015205	2.8146	0.0014532	516.3097580175878	102.95	1.1323	102.96	102.54	103.68	0.0054245					58	27	4	0	0	0	0.024865	1	13259	13259		8.4073	5.3813	1	236590	+		74274	21538	51836	51920	81603	81603					0.15335484178672232
SLVFWRRKWLR	11	Unmodified	_SLVFWRRKWLR_					0	0	0			REV__ENSG00000105559|ENST00000263265|PLEKHA4	REV__ENSG00000105559|ENST00000263265|PLEKHA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	516.308767	1545.90447	-0.12089	-6.2415E-05	3.3537	0.0017315	3.2328	0.0016691	516.3097217282861	103.3	1.0711	103.17	102.63	103.7	-0.12783	0.11363	0.00037887	NaN	16.53	77	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140920	+		74275	21538	51836	51920							0.15335484178672232
SLVHDDVID	9	Unmodified	_SLVHDDVID_					0	0	0		nc|ENSG00000148459|Q5T2R2-2|PDSS1;nc|ENSG00000148459|Q5T2R2-3|PDSS1;ENSG00000148459|ENST00000376215|PDSS1	nc|ENSG00000148459|Q5T2R2-2|PDSS1	nc|ENSG00000148459|Q5T2R2-2|PDSS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.76531982421875	2	506.750921	1011.48729	-1.1204	-0.00056775	-0.3114	-0.0001578	-1.4318	-0.00072555	507.2521864901126	80.344	0.5049	80.193	79.966	80.471	-0.15169					14	11	2	0	0	0	0.024323	1	9945	9945		44.117	18.667	1	69462			74276	6031	51837	51921	81604	81604					-0.017994305530010024
SLVHKCEDN	9	Unmodified	_SLVHKCEDN_					0	0	0			REV__FEN1|p.L144V|1|0.18|ENSG00000168496|chr11:61795791-61795791|C/G|missense_variant	REV__FEN1|p.L144V|1|0.18|ENSG00000168496|chr11:61795791-61795791|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.817626953125	2	522.742573	1043.47059	0.26855	0.00014038	-3.9773	-0.0020791	-3.7087	-0.0019387	522.7401932939342	64.632	2.6276	64.678	63.546	66.174	0.045502					141	71	3	0	0	0	0.023837	1	7593	7593		23.523	0	1	741450	+		74277	36035	51838	51922	81605	81605					-0.04940254710595582
SLVHPFPF	8	Unmodified	_SLVHPFPF_					0	0	0			REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2412414550781	2	472.255446	942.496338	1.7562	0.00082939	-2.5486	-0.0012036	-0.7924	-0.00037421	472.25406204599136	24.064	0.61466	23.883	23.671	24.285	-0.18089					22	13	2	0	0	0	0.027866	1	987	987		29.842	8.1392	1	508170	+		74278	32463	51839	51923	81606	81606					0.02279007593995175
SLVHTSGNI	9	Unmodified	_SLVHTSGNI_					0	0	0			REV__nc|ENSG00000164270|Q13639-5|HTR4	REV__nc|ENSG00000164270|Q13639-5|HTR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.77117919921875	2	464.248349	926.482145	0.074872	3.4759E-05	-0.14616	-6.7856E-05	-0.071292	-3.3097E-05	464.24812861993547	34.907	0.75044	34.958	34.599	35.349	0.050255					30	19	2	0	0	0	0.024292	1	2534	2534		49.442	5.3247	1	185810	+		74279	36863	51840	51924	81607	81607					0.015963103750550545
SLVIGVFYL	9	Unmodified	_SLVIGVFYL_					0	0	0		ENSG00000103089|ENST00000219368|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF;nc|ENSG00000103089|Q7L5A8-2|FA2H	ENSG00000103089|ENST00000219368|FA2H	ENSG00000103089|ENST00000219368|FA2H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.8253173828125	2	505.799686	1009.58482	-0.54995	-0.00027817	-3.5974	-0.0018196	-4.1474	-0.0020977	505.79800443380907	80.045	0.63056	80.045	79.658	80.289	0					20	14	2	0	0	0	0.024	1	9916	9916		55.504	25.001	1	150930			74280	2467	51841	51925	81608	81608					0.080410031138058
SLVIMNQV	8	Unmodified	_SLVIMNQV_					0	0	0		ENSG00000114395|ENST00000425346|CYB561D2	ENSG00000114395|ENST00000425346|CYB561D2	ENSG00000114395|ENST00000425346|CYB561D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.2456970214844	2	452.252046	902.489538	-1.8227	-0.00082433	-2.0849	-0.00094291	-3.9076	-0.0017672	452.25095473029324	51.987	0.77316	51.718	51.281	52.054	-0.26903					33	20	2	0	0	0	0.027866	1	5340	5340		33.516	16.151	1	383020			74281	3361	51842	51926	81609	81609					0.034393266511074216
SLVKGRKRSC	10	Unmodified	_SLVKGRKRSC_					0	0	0			REV__ENST00000504490.2_1_4:113278594-113279089:+|nuORF	REV__ENST00000504490.2_1_4:113278594-113279089:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3303833007812	2	567.332224	1132.6499	-0.57331	-0.00032526	-3.5903	-0.0020369	-4.1636	-0.0023622	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.1179	1	10797	10797		19.997	3.5236	1	5699600	+		74282	33983	51843	51927	81610	81610					0.08887674367997533
SLVKKLEAM	9	Unmodified	_SLVKKLEAM_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.80322265625	2	509.801903	1017.58925	0.28849	0.00014708	3.1095	0.0015852	3.398	0.0017323	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.82115	1	10507	10507		37.812	2.1932	1	3441300	+		74283	28692	51844	51928	81611	81611					0.08116144265056846
SLVKLKKVA	9	Unmodified	_SLVKLKKVA_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.6993713378906	2	493.342052	984.669552	-0.35459	-0.00017494	-0.12621	-6.2263E-05	-0.4808	-0.0002372	493.3418618850526	29.037	0.47551	28.864	28.594	29.07	-0.17258					26	10	3	0	0	0	0.024541	1	1704	1704		10.265	3.5297	1	313080	+		74284	22104	51845	51929	81612	81612					0.1766037365041484
SLVLDNCIN	9	Unmodified	_SLVLDNCIN_					0	0	0		ENSG00000112130|ENST00000373479|RNF8;ENST00000229866.10_1_6:37328318-37358531:+|nuORF	ENSG00000112130|ENST00000373479|RNF8	ENSG00000112130|ENST00000373479|RNF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2866516113281	2	495.749867	989.485181	-0.084681	-4.1981E-05	-3.0877	-0.0015307	-3.1724	-0.0015727	495.74833992055255	67.809	0.8638	67.57	67.245	68.109	-0.23814					30	20	2	0	0	0	0.024288	1	7775	7775		52.937	23.767	1	149180			74285	3173	51846	51930	81613	81613					-0.009981825624663543
SLVLFLSLTT	10	Unmodified	_SLVLFLSLTT_					0	0	0		ENST00000440578.1_1_6:138145535-138146927:-|nuORF	ENST00000440578.1_1_6:138145535-138146927:-|nuORF	ENST00000440578.1_1_6:138145535-138146927:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.2673950195312	2	547.328808	1092.64306	-0.20598	-0.00011274	-3.2128	-0.0017585	-3.4188	-0.0018712	547.3268062970353	39.715	0.32087	39.715	39.594	39.915	0					12	8	2	0	0	0	0.03519	1	3460	3460		32.812	21.301	1	83416			74286	14347	51847	51931	81614	81614					0.10044639968396041
SLVLFLSLTT	10	Unmodified	_SLVLFLSLTT_					0	0	0		ENST00000440578.1_1_6:138145535-138146927:-|nuORF	ENST00000440578.1_1_6:138145535-138146927:-|nuORF	ENST00000440578.1_1_6:138145535-138146927:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	547.328808	1092.64306	-1.6558	-0.00090625	-1.1063	-0.00060552	-2.7621	-0.0015118	547.3278752952192	39.733	0.21989	39.621	39.534	39.754	-0.11223	-0.047225	0.0010734	NaN	25.574	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64545			74287	14347	51847	51931							0.10044639968396041
SLVLIAVE	8	Unmodified	_SLVLIAVE_					0	0	0		ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.25830078125	2	422.262936	842.51132	0.55845	0.00023581	-1.3968	-0.00058983	-0.83838	-0.00035402	422.2613956775228	19.142	0.59382	18.981	18.688	19.282	-0.16079					22	11	3	0	0	0	0.027866	1	420	420		26.796	0	1	92714			74288	7222	51848	51932	81615	81615					0.08376454671326883
SLVLILKTI	9	Unmodified	_SLVLILKTI_					0	0	0		ENSG00000186086|ENST00000495380|NBPF6;ENSG00000196427|ENST00000415641|NBPF4;nc|ENSG00000186086|Q5VWK0-2|NBPF6	ENSG00000186086|ENST00000495380|NBPF6	ENSG00000186086|ENST00000495380|NBPF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8053283691406	2	500.344261	998.673968	-0.39091	-0.00019559	-3.0787	-0.0015404	-3.4696	-0.001736	500.34397397216907	60.114	0.48266	59.914	59.727	60.209	-0.20016					19	12	3	0	0	0	0.024466	1	6856	6856		18.262	3.3972	1	107280			74289	9509	51849	51933	81616	81616					0.17457838073335097
SLVLLGWLL	9	Unmodified	_SLVLLGWLL_					0	0	0			REV__nc|ENSG00000167711|P08697-2|SERPINF2	REV__nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.78436279296875	2	507.323328	1012.6321	0.5642	0.00028623	-3.9549	-0.0020064	-3.3906	-0.0017202	507.3212071186759	72.84	0.61177	72.559	72.262	72.873	-0.28124					30	14	3	0	0	0	0.024386	1	8857	8857		42.474	0	1	251580	+	+	74290	26185	51850	51934	81617	81617					0.1262928238479617
SLVLNDLLI	9	Unmodified	_SLVLNDLLI_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.78961181640625	2	500.307875	998.601197	-0.00064554	-3.2297E-07	-2.2529	-0.0011271	-2.2535	-0.0011275	500.8079607755695	92.866	0.46793	92.873	92.672	93.14	0.0077209					17	10	3	0	0	0	0.024344	1	11699	11699		45.972	3.5761	1	81421			74291	6083	51851	51935	81618	81618					0.10184084279910621
SLVLRPPGG	9	Unmodified	_SLVLRPPGG_					0	0	0			REV__ENST00000526698.1_1_11:1501682-1502057:-|nuORF	REV__ENST00000526698.1_1_11:1501682-1502057:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2590026855469	2	448.271627	894.528701	0.4407	0.00019755	-2.1747	-0.00097487	-1.734	-0.00077732	448.2719701583027	89.041	0.37653	89.041	88.767	89.144	0					14	8	3	0	0	0	0.024263	1	11223	11223		34.173	3.6689	1	65069	+		74292	34457	51852	51936	81619	81619					0.07721794996996323
SLVLSFNK	8	Unmodified	_SLVLSFNK_					0	0	0			REV__ENST00000498967.3_2_12:124068895-124069045:-|nuORF	REV__ENST00000498967.3_2_12:124068895-124069045:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.23883056640625	2	454.26601	906.517468	1.3553	0.00061568	-3.7071	-0.001684	-2.3518	-0.0010683	454.26411503753496	17.686	0.19952	17.532	17.408	17.607	-0.15403					5	3	2	0	0	0	0.027866	1	217	217		18.324	0	1	11894	+		74293	33893	51853	51937	81620	81620					0.06046972902845482
SLVLSFNK	8	Unmodified	_SLVLSFNK_					0	0	0			REV__ENST00000498967.3_2_12:124068895-124069045:-|nuORF	REV__ENST00000498967.3_2_12:124068895-124069045:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	454.26601	906.517468	3.9249	0.001783	-6.5296	-0.0029662	-2.6047	-0.0011832	454.2626787963049	17.474	0.19881	17.474	17.349	17.548	0	-0.029312	-0.0014533	NaN	18.324	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19795	+		74294	33893	51853	51937							0.06046972902845482
SLVLTSPGGG	10	Unmodified	_SLVLTSPGGG_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5;nc|ENSG00000204406|Q9P267-2|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.2445983886719	2	444.245275	886.475997	0.28073	0.00012471	0.29029	0.00012896	0.57103	0.00025368	444.24547325776797	102.85	1.105	102.85	102.55	103.65	-0.0046082					64	26	5	0	0	0	1.1267	1	13086	13086		29.15	1.2673	1	8156500			74295	10343	51854	51938	81621	81621					0.028217921435384596
SLVPILFNPIR	11	Unmodified	_SLVPILFNPIR_					0	0	0		ENST00000469637.1_1_1:15852902-15853013:-|nuORF	ENST00000469637.1_1_1:15852902-15853013:-|nuORF	ENST00000469637.1_1_1:15852902-15853013:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	635.3878784179688	2	634.889898	1267.76524	0.12287	7.8009E-05	3.5786	0.002272	3.7014	0.00235	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0521	1	13041	13041		24.519	0.99649	1	1729500			74296	14910	51855	51939	81622	81622					0.14207101770648478
SLVPSLCL	8	Unmodified	_SLVPSLCL_					0	0	0		ENST00000569217.1_1_16:28855425-28855644:-|nuORF	ENST00000569217.1_1_16:28855425-28855644:-|nuORF	ENST00000569217.1_1_16:28855425-28855644:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2460021972656	2	416.235864	830.457176	-0.24878	-0.00010355	3.6416	0.0015158	3.3928	0.0014122	416.23718681501697	28.66	0.29092	28.508	28.321	28.612	-0.15195					11	6	3	0	0	0	0.027866	1	1672	1672		50.025	0	1	81811			74297	17000	51856	51940	81623	81623					0.03516539248096251
SLVQTLAKP	9	Unmodified	_SLVQTLAKP_					0	0	0			REV__nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	REV__nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	478.792392	955.570232	1.3239	0.00063389	1.8556	0.00088843	3.1795	0.0015223	478.7917755939909	51.355	0.39085	51.243	50.973	51.364	-0.11163					14	9	2	0	0	0	0.024319	1	5270	5270		39.253	0	1	236680	+		74298	22284	51857	51941	81624	81624					0.09066930965661868
SLVRCRGRN	9	Unmodified	_SLVRCRGRN_					0	0	0		ENST00000521696.1_1_8:100025124-100025232:-|nuORF	ENST00000521696.1_1_8:100025124-100025232:-|nuORF	ENST00000521696.1_1_8:100025124-100025232:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2778930664062	2	530.793266	1059.57198	-0.6466	-0.00034321	1.1695	0.00062076	0.52289	0.00027755	530.7935320071701	57.689	0.4279	57.456	57.274	57.702	-0.23363					18	10	2	0	0	0	0.02435	1	6334	6334		34.173	6.2903	1	880170			74299	16009	51858	51942	81625	81625					0.0445766150264717
SLVRHNTL	8	Unmodified	_SLVRHNTL_					0	0	0			REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.76824951171875	2	470.272158	938.529764	-0.14839	-6.9786E-05	0.67138	0.00031573	0.52299	0.00024595	470.27292545580127	48.289	1.3699	48.289	47.146	48.516	0					58	40	3	0	0	0	0.027866	1	4901	4901		44.117	13.613	1	1777000	+		74300	23874	51859	51943	81626	81626					0.05804009365908769
SLVRRALEP	9	Unmodified	_SLVRRALEP_					0	0	0		ENST00000497343.5_1_3:160473400-160474084:+|nuORF	ENST00000497343.5_1_3:160473400-160474084:+|nuORF	ENST00000497343.5_1_3:160473400-160474084:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7969970703125	2	520.81419	1039.61383	-0.51762	-0.00026958	-0.39057	-0.00020341	-0.90819	-0.000473	520.8141041266904	56.628	0.33453	56.726	56.546	56.881	0.097893					13	9	2	0	0	0	0.024484	1	6224	6224		30.318	0	1	161290			74301	15590	51860	51944	81627	81627					0.09560540462780409
SLVSELSRRDI	11	Unmodified	_SLVSELSRRDI_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	425.2635803222656	3	425.573614	1273.69901	-0.59846	-0.00025469	3.385	0.0014406	2.7866	0.0011859	425.5749683339019	37.807	0.80154	37.839	37.6	38.402	0.032269					32	22	2	0	0	0	0.024788	1	3110	3110		8.7993	5.7733	1	352040	+		74302	22434	51861	51945	81628	81628					0.07311241137949764
SLVSPTLLLP	10	Unmodified	_SLVSPTLLLP_					0	0	0		ENST00000286692.8_1_1:111682220-111682499:-|nuORF	ENST00000286692.8_1_1:111682220-111682499:-|nuORF	ENST00000286692.8_1_1:111682220-111682499:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.319091796875	2	520.323525	1038.6325	-0.15976	-8.3129E-05	-1.5875	-0.00082602	-1.7473	-0.00090915	520.3227489488684	86.4	1.5681	86.355	85.616	87.184	-0.045097					53	36	2	0	0	0	0.03519	1	10733	10733		35.618	0	1	58246			74303	11760	51862	51946	81629	81629					0.11472657314016033
SLVSRHLL	8	Unmodified	_SLVSRHLL_					0	0	0		nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	nc|ENSG00000108469|O94762-2|RECQL5	nc|ENSG00000108469|O94762-2|RECQL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.75128173828125	2	462.784902	923.55525	0.079929	3.699E-05	-0.12325	-5.7038E-05	-0.04332	-2.0048E-05	462.7847618272362	49.719	0.62756	49.567	49.368	49.996	-0.1512					25	16	2	0	0	0	0.027866	1	5199	5199		26.796	0	1	1108400			74304	2901	51863	51947	81630	81630					0.09041483888336188
SLVSTKGLGSV	11	Unmodified	_SLVSTKGLGSV_					0	0	0			REV__ENSG00000119698|ENST00000304338|PPP4R4	REV__ENSG00000119698|ENST00000304338|PPP4R4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.31005859375	2	524.305864	1046.59717	-0.1144	-5.9979E-05	2.6394	0.0013839	2.525	0.0013239	524.3074545808304	75.146	0.70462	74.883	74.531	75.235	-0.26326					40	16	3	0	0	0	0.48167	1	8892	8892		77.533	0.75914	1	1876100	+		74305	22479	51864	51948	81631	81631					0.07573994786184812
SLVTATCQVS	10	Carbamidomethyl (C)	_SLVTATC(Carbamidomethyl (C))QVS_	SLVTATC(1)QVS		SLVTATC(53)QVS		0	1	0			REV__ENST00000321250.12_1_8:29965226-29965448:+|nuORF	REV__ENST00000321250.12_1_8:29965226-29965448:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2635498046875	2	533.265881	1064.51721	-0.98638	-0.000526	-3.1674	-0.0016891	-4.1538	-0.0022151	533.2641522608016	30.78	0.7023	30.602	30.366	31.069	-0.17818					33	16	3	0	0	0	0.91448	1	1987	1987		53.089	8.9722	1	908290	+		74306	30343	51865	51949	81632	81632	396				-0.01246814879300473
SLVTATCQVS	10	Carbamidomethyl (C)	_SLVTATC(Carbamidomethyl (C))QVS_	SLVTATC(1)QVS		SLVTATC(58)QVS		0	1	0			REV__ENST00000321250.12_1_8:29965226-29965448:+|nuORF	REV__ENST00000321250.12_1_8:29965226-29965448:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2638549804688	2	533.265881	1064.51721	-0.42324	-0.0002257	-3.7471	-0.0019982	-4.1704	-0.0022239	533.2638043270586	30.812	0.69787	30.66	30.426	31.124	-0.15231					29	16	2	0	0	0	0.83673	1	1986	1986		58.23	6.8945	1	1032900	+		74307	30343	51865	51949	81633	81633	396				-0.01246814879300473
SLVTGHFPC	9	Unmodified	_SLVTGHFPC_					0	0	0		ENST00000252136.11_2_22:20104428-20104632:-|nuORF	ENST00000252136.11_2_22:20104428-20104632:-|nuORF	ENST00000252136.11_2_22:20104428-20104632:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7493896484375	2	480.73402	959.453487	-0.43109	-0.00020724	-3.0044	-0.0014443	-3.4355	-0.0016516	480.7323761976247	33.153	3.6941	33.159	32.738	36.432	0.0066261					176	98	3	0	0	0	0.023775	1	2324	2324		57.811	9.8957	1	605900			74308	11358	51866	51950	81634	81634					-0.02786130525748831
SLVTLLDSN	9	Unmodified	_SLVTLLDSN_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2755126953125	2	481.263665	960.512776	-0.57739	-0.00027788	1.1679	0.00056208	0.59052	0.0002842	481.26397382762315	43.598	0.6158	43.598	43.332	43.948	0					53	16	4	0	0	0	0.024397	1	4150	4150		47.657	14.845	1	1701600	+		74309	20514	51867	51951	81635	81635					0.030940439694177257
SLVTLLDSN	9	Unmodified	_SLVTLLDSN_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2755126953125	2	481.263665	960.512776	-0.68497	-0.00032965	-4.3393	-0.0020883	-5.0242	-0.002418	481.25942912400683	43.932	0.15083	43.932	43.836	43.987	0					5	3	2	0	0	0	0.024397	1	4150	4150		47.657	24.615	1	44791	+		74310	20514	51867	51951	81636	81636					0.030940439694177257
SLVVSPQAR	9	Unmodified	_SLVVSPQAR_					0	0	0			REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7611389160156	2	478.779816	955.545079	0.086609	4.1467E-05	-1.3664	-0.00065422	-1.2798	-0.00061276	478.7793202054518	33.932	0.19523	33.927	33.753	33.948	-0.0045624					5	4	2	0	0	0	0.024397	1	2473	2473		56.721	33.679	1	45230	+		74311	20047	51868	51952	81637	81637					0.0655287616308442
SLWAGVEII	9	Unmodified	_SLWAGVEII_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2544250488281	2	494.279118	986.543683	0.29356	0.0001451	-3.8219	-0.0018891	-3.5283	-0.001744	494.276465026802	57.247	0.49995	57.045	56.783	57.283	-0.20209					31	13	3	0	0	0	0.024	1	6237	6237		55.504	5.4797	1	3885800			74312	18324	51869	51953	81638	81638					0.049872420743326984
SLWGGPPVHR	10	Unmodified	_SLWGGPPVHR_					0	0	0			REV__ENST00000556883.1_1_14:93650993-93651212:-|nuORF	REV__ENST00000556883.1_1_14:93650993-93651212:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3224487304688	2	553.298707	1104.58286	0.22195	0.0001228	3.1207	0.0017267	3.3426	0.0018495	553.3012554502053	68.241	0.4951	68.26	67.967	68.462	0.018913					17	12	2	0	0	0	0.03519	1	8090	8090		40.778	0	1	212600	+		74313	35050	51870	51954	81639	81639					0.03475387148569098
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7354431152344	2	479.735074	957.455596	1.5712	0.00075377	-1.7816	-0.00085468	-0.21036	-0.00010092	479.7342288093958	59.762	2.4881	59.762	58.965	61.453	0					160	66	4	0	0	0	0.01896	5	6853	6817;6829;6841;6853;6865		150.36	45.615	1	57218000			74314	9694	51871	51955	81640;81641;81642;81643;81644	81643					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.73516845703125	2	479.735074	957.455596	0.039716	1.9053E-05	-0.20469	-9.8197E-05	-0.16497	-7.9144E-05	479.7349833778638	59.944	2.2815	59.744	59.356	61.638	-0.20016					157	60	4	0	0	0	0.056725	4	6850	6826;6838;6850;6862		126.24	24.642	1	52328000			74315	9694	51871	51955	81645;81646;81647;81648	81647					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7352294921875	2	479.735074	957.455596	-0.28822	-0.00013827	0.10219	4.9022E-05	-0.18603	-8.9245E-05	479.735127465436	59.625	2.406	59.711	59.314	61.72	0.085682					151	63	4	0	0	0	0.048057	4	6740	6728;6740;6752;6764		129.42	26.648	1	56880000			74316	9694	51871	51955	81649;81650;81651;81652	81650					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.73529052734375	2	479.735074	957.455596	1.0655	0.00051115	-0.68576	-0.00032898	0.37972	0.00018216	479.7344760086726	60.053	1.9295	59.856	59.38	61.309	-0.19742					134	48	5	0	0	0	0.034407	2	6671	6659;6671		138.06	26.868	1	22815000			74317	9694	51871	51955	81653;81654	81654					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7349853515625	2	479.735074	957.455596	-0.026737	-1.2827E-05	0.37835	0.00018151	0.35161	0.00016868	479.7350141799181	60.004	2.0545	59.827	59.401	61.455	-0.1761					147	51	6	0	0	0	0.034407	3	6652	6641;6652;6664		138.06	26.414	1	26409000			74318	9694	51871	51955	81655;81656;81657	81656					-0.024833785162968525
SLWGQPAEA	9	Unmodified	_SLWGQPAEA_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;COL4A5|p.G1012Vfs*9|1|0.09|ENSG00000188153|chrX:108625722-108625722|G/-|frameshift_variant;ENST00000477429.1_1_X:107683355-107686177:+|nuORF;ENST00000470339.1_1_X:107683355-107812096:+|nuORF	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.73541259765625	2	479.735074	957.455596	-0.060134	-2.8848E-05	0.3875	0.0001859	0.32737	0.00015705	479.735037745241	60.121	2.0983	59.873	59.294	61.392	-0.24841					157	52	6	0	0	0	0.12933	5	6642	6633;6642;6653;6665;6679		104.01	21.773	1	23269000			74319	9694	51871	51955	81658;81659;81660;81661;81662	81659					-0.024833785162968525
SLWHKKKKLTK	11	Unmodified	_SLWHKKKKLTK_					0	0	0			REV__ENSG00000081026|ENST00000307546|MAGI3	REV__ENSG00000081026|ENST00000307546|MAGI3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.26361083984375	3	466.297756	1395.87144	-1.0986	-0.00051226	-1.9162	-0.00089351	-3.0147	-0.0014058	466.2974264446462	37.918	0.32565	37.699	37.535	37.861	-0.21848					12	8	2	0	0	0	0.024797	1	3042	3042		25.892	19.571	1	189790	+		74320	20671	51872	51956	81663	81663					0.1893385733596915
SLWHPEPSP	9	Unmodified	_SLWHPEPSP_					0	0	0		ENST00000562945.2_1_16:34428948-34429212:-|nuORF	ENST00000562945.2_1_16:34428948-34429212:-|nuORF	ENST00000562945.2_1_16:34428948-34429212:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2846069335938	2	525.256174	1048.49779	-0.31165	-0.00016369	1.5981	0.0008394	1.2864	0.00067571	525.2572015940223	55.617	0.44395	55.461	55.26	55.704	-0.15601					20	11	2	0	0	0	0.024263	1	6107	6107		60.972	23.16	1	563580			74321	16857	51873	51957	81664	81664					-0.024514031078979315
SLWIFFFL	8	Unmodified	_SLWIFFFL_					0	0	0		ENST00000317126.8_1_10:73976635-73976764:-|nuORF	ENST00000317126.8_1_10:73976635-73976764:-|nuORF	ENST00000317126.8_1_10:73976635-73976764:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7586059570312	2	536.796946	1071.57934	-0.49295	-0.00026461	-2.8535	-0.0015318	-3.3465	-0.0017964	536.7951657419952	39.662	0.54069	39.505	39.197	39.738	-0.15731					31	13	3	0	0	0	0.027866	1	3352	3352		21.702	6.0605	1	748330			74322	12158	51874	51958	81665	81665					0.0464132432198312
SLWKSKLL	8	Unmodified	_SLWKSKLL_					0	0	0		ENSG00000182168|ENST00000453304|UNC5C;nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	ENSG00000182168|ENST00000453304|UNC5C	ENSG00000182168|ENST00000453304|UNC5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7908020019531	2	487.805303	973.596052	-0.44046	-0.00021486	0.30419	0.00014838	-0.13627	-6.6475E-05	487.80516370864865	78.974	1.2862	78.993	78.524	79.811	0.018677					70	30	4	0	0	0	0.027866	1	9677	9677		79.451	0	1	417370			74323	9106	51875	51959	81666	81666					0.10819825207954636
SLWLQQSARR	10	Unmodified	_SLWLQQSARR_					0	0	0		ENST00000511521.1_1_4:78784023-78784152:+|nuORF	ENST00000511521.1_1_4:78784023-78784152:+|nuORF	ENST00000511521.1_1_4:78784023-78784152:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.2065734863281	3	415.566794	1243.67855	-0.21308	-8.8548E-05	3.8149	0.0015853	3.6018	0.0014968	415.56829642847885	36.698	0.5634	36.481	36.165	36.729	-0.21661					19	13	2	0	0	0	0.03519	1	2893	2893		23.378	8.6842	1	113370			74324	15839	51876	51960	81667	81667					0.06646115268790709
SLWLYHHP	8	Unmodified	_SLWLYHHP_					0	0	0		ENST00000456189.2_1_6:2990111-2998923:-|nuORF	ENST00000456189.2_1_6:2990111-2998923:-|nuORF	ENST00000456189.2_1_6:2990111-2998923:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7769775390625	2	526.769252	1051.52395	-0.62238	-0.00032785	4.4111	0.0023237	3.7888	0.0019958	526.7717248300823	49.697	0.58868	49.697	49.324	49.913	0					28	15	3	0	0	0	0.027866	1	5115	5115		26.796	9.4311	1	1190400			74325	14596	51877	51961	81668	81668					0.00024910854244808434
SLWNNEVP	8	Unmodified	_SLWNNEVP_					0	0	0		ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7357177734375	2	479.735074	957.455596	1.5712	0.00075377	-1.7816	-0.00085468	-0.21036	-0.00010092	479.7342288093958	59.762	2.4881	59.762	58.965	61.453	0					160	66	4	0	0	0	0.71833	1	6877	6877		65.803	3.6958	1	57218000			74326	13792	51878	51962	81669	81669					-0.024833785162854838
SLWNNEVP	8	Unmodified	_SLWNNEVP_					0	0	0		ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.73541259765625	2	479.735074	957.455596	0.039716	1.9053E-05	-0.20469	-9.8197E-05	-0.16497	-7.9144E-05	479.7349833778638	59.944	2.2815	59.744	59.356	61.638	-0.20016					157	60	4	0	0	0	0.59392	1	6875	6875		76.847	0.072494	1	52328000			74327	13792	51878	51962	81670	81670					-0.024833785162854838
SLWNNEVP	8	Unmodified	_SLWNNEVP_					0	0	0		ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7353210449219	2	479.735074	957.455596	1.0655	0.00051115	-0.68576	-0.00032898	0.37972	0.00018216	479.7344760086726	60.053	1.9295	59.856	59.38	61.309	-0.19742					134	48	5	0	0	0	0.71833	1	6684	6684		65.803	1.5959	1	22815000			74328	13792	51878	51962	81671	81671					-0.024833785162854838
SLWNNEVP	8	Unmodified	_SLWNNEVP_					0	0	0		ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	ENST00000409790.5_2_16:11273112-11273262:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7354431152344	2	479.735074	957.455596	-0.026737	-1.2827E-05	0.37835	0.00018151	0.35161	0.00016868	479.7350141799181	60.004	2.0545	59.827	59.401	61.455	-0.1761					147	51	6	0	0	0	0.94517	1	6688	6688		45.952	6.6991	1	26409000			74329	13792	51878	51962	81672	81672					-0.024833785162854838
SLWPSSYV	8	Unmodified	_SLWPSSYV_					0	0	0			REV__ENST00000261015.4_1_2:203772671-203776309:-|nuORF	REV__ENST00000261015.4_1_2:203772671-203776309:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.29022216796875	2	469.734543	937.454533	-0.28265	-0.00013277	-3.3837	-0.0015894	-3.6664	-0.0017222	469.7327386801013	27.625	0.56482	27.625	27.398	27.963	0					33	14	3	0	0	0	0.027866	1	1575	1575		50.025	9.4519	1	426390	+		74330	29607	51879	51963	81673	81673					-0.016695928851959252
SLWPSSYV	8	Unmodified	_SLWPSSYV_					0	0	0			REV__ENST00000261015.4_1_2:203772671-203776309:-|nuORF	REV__ENST00000261015.4_1_2:203772671-203776309:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	469.734543	937.454533	-0.42668	-0.00020043	-3.2684	-0.0015353	-3.6951	-0.0017357	469.7327486909563	27.163	0.43126	27.245	26.996	27.427	0.081291	-0.26975	0.00024562	NaN	68.485	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519450	+		74331	29607	51879	51963							-0.016695928851959252
SLWPVNLL	8	Unmodified	_SLWPVNLL_					0	0	0		ENST00000462625.1_1_22:31608346-31654562:+|nuORF	ENST00000462625.1_1_22:31608346-31654562:+|nuORF	ENST00000462625.1_1_22:31608346-31654562:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.2845153808594	2	471.276378	940.538203	0.7268	0.00034252	-4.263	-0.002009	-3.5362	-0.0016665	471.27400042186036	51.239	0.43969	51.239	50.956	51.395	0					19	11	2	0	0	0	0.027866	1	5379	5379		19.36	0	1	681880			74332	14712	51880	51964	81674	81674					0.06555563282518051
SLWQDIPDV	9	Unmodified	_SLWQDIPDV_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.7691040039062	2	536.769114	1071.52368	-0.21374	-0.00011473	-0.16854	-9.0467E-05	-0.38228	-0.00020519	536.7690591095416	87.146	2.0835	87.146	86.343	88.426	0					53	16	4	0	0	0	0.1158	2	10958	10947;10958		107.01	10.886	1	4369100			74333	5580	51881	51965	81675;81676	81676					-0.009225536563008063
SLWQDIPDV	9	Unmodified	_SLWQDIPDV_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7692260742188	2	536.769114	1071.52368	-0.25081	-0.00013463	-0.16895	-9.0685E-05	-0.41975	-0.00022531	536.7690121483112	87.089	0.9583	87.054	86.734	87.693	-0.035362					48	15	4	0	0	0	0.26413	1	10911	10911		80.455	11.668	1	4653300			74334	5580	51881	51965	81677	81677					-0.009225536563008063
SLWQDIPDV	9	Unmodified	_SLWQDIPDV_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.76904296875	2	536.769114	1071.52368	-0.10563	-5.67E-05	-0.27966	-0.00015011	-0.38529	-0.00020681	536.7689990577634	87.091	1.4179	87.112	86.417	87.834	0.021263					62	24	4	0	0	0	0.17845	1	10871	10871		93.143	10.393	1	4286000			74335	5580	51881	51965	81678	81678					-0.009225536563008063
SLWQDIPDV	9	Unmodified	_SLWQDIPDV_					0	0	0		nc|ENSG00000142632|Q8IW93-2|ARHGEF19;ENSG00000142632|ENST00000270747|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	nc|ENSG00000142632|Q8IW93-2|ARHGEF19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7688598632812	2	536.769114	1071.52368	-0.31775	-0.00017056	0.28533	0.00015315	-0.032421	-1.7403E-05	536.7692864421366	87.148	1.2192	86.969	86.437	87.656	-0.17875					36	16	4	0	0	0	0.5973	1	10583	10583		52.937	5.2794	1	607620			74336	5580	51881	51965	81679	81679					-0.009225536563008063
SLWQEIPVV	9	Unmodified	_SLWQEIPVV_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7953491210938	2	535.797675	1069.5808	-1.0683	-0.0005724	-0.13485	-7.2251E-05	-1.2032	-0.00064465	535.7974282861126	92.155	1.3684	92.155	91.641	93.009	0					96	32	4	0	0	0	0.32811	1	11692	11692		71.877	20.685	1	2271900			74337	1139	51882	51966	81680	81680					0.04878913620086678
SLWQEIPVV	9	Unmodified	_SLWQEIPVV_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.796630859375	2	535.797675	1069.5808	-0.30484	-0.00016333	-0.75284	-0.00040337	-1.0577	-0.0005667	535.7970589564059	92.162	1.2672	92.171	91.832	93.099	0.0094147					82	30	4	0	0	0	0.50848	2	11635	11623;11635		58.782	8.8199	1	2546600			74338	1139	51882	51966	81681;81682	81682					0.04878913620086678
SLWQEIPVV	9	Unmodified	_SLWQEIPVV_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7977905273438	2	535.797675	1069.5808	-1.8096	-0.00096955	1.639	0.00087818	-0.17054	-9.1373E-05	535.7984082857128	92.046	1.2111	91.902	91.401	92.612	-0.14356					79	28	4	0	0	0	0.14024	2	11285	11285;11296		101.6	19.416	1	1851100			74339	1139	51882	51966	81683;81684	81683					0.04878913620086678
SLWQEIPVV	9	Unmodified	_SLWQEIPVV_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7975463867188	2	535.797675	1069.5808	-0.62339	-0.00033401	0.19169	0.00010271	-0.43169	-0.0002313	535.7976595923054	92.079	1.5599	91.957	91.63	93.19	-0.12242					68	36	3	0	0	0	0.23085	3	11313	11304;11313;11329		84.916	12.461	1	1710900			74340	1139	51882	51966	81685;81686;81687	81686					0.04878913620086678
SLWQEIPVV	9	Unmodified	_SLWQEIPVV_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.797119140625	2	535.797675	1069.5808	-0.39146	-0.00020974	0.040306	2.1596E-05	-0.35115	-0.00018815	535.7975036964524	92.17	1.7815	92.028	91.573	93.354	-0.14131					103	41	4	0	0	0	0.34489	2	11312	11301;11312		69.628	7.3311	1	1598200			74341	1139	51882	51966	81688;81689	81689					0.04878913620086678
SLWRSIPSF	9	Unmodified	_SLWRSIPSF_					0	0	0			REV__ENST00000359297.6_1_1:36806610-36807063:-|nuORF	REV__ENST00000359297.6_1_1:36806610-36807063:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7803344726562	2	546.795466	1091.57638	-0.63555	-0.00034752	-1.6515	-0.00090303	-2.287	-0.0012505	546.7941050798577	73.453	0.47246	73.262	73.047	73.519	-0.19027					16	11	2	0	0	0	0.024323	1	8616	8616		35.618	0	1	339420	+		74342	30876	51883	51967	81690	81690					0.03425449197175112
SLWRYYEV	8	Unmodified	_SLWRYYEV_					0	0	0			REV__ENSG00000141540|ENST00000269346|TTYH2	REV__ENSG00000141540|ENST00000269346|TTYH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2505493164062	2	558.279649	1114.54475	0.42557	0.00023758	-0.31408	-0.00017535	0.11148	6.2238E-05	558.2773805232357	42.976	0.98671	43.006	42.571	43.558	0.030823					42	26	3	0	0	0	0.027866	1	3978	3978		18.324	0	1	238450	+		74343	24102	51884	51968	81691	81691					-0.007945435567762615
SLWSVRLL	8	Unmodified	_SLWSVRLL_					0	0	0			REV__ENST00000569969.5_2_16:28995606-28996332:+|nuORF	REV__ENST00000569969.5_2_16:28995606-28996332:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2348937988281	2	487.295102	972.575651	-0.69831	-0.00034028	3.8138	0.0018585	3.1155	0.0015182	487.29681643803593	48.158	0.69692	47.882	47.595	48.292	-0.27598					30	18	2	0	0	0	0.027866	1	4768	4768		68.787	13.283	1	763860	+		74344	35382	51885	51969	81692	81692					0.08826654548136048
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.7583618164062	2	549.758746	1097.50294	-0.19188	-0.00010549	-0.64298	-0.00035349	-0.83487	-0.00045898	549.7583782647804	68.084	1.2218	68.084	67.755	68.977	0					95	31	5	0	0	0	0.013887	4	8142	8132;8142;8153;8165		180.93	93.23	1	12942000			74345	9307	51886	51970	81693;81694;81695;81696	81694					-0.041911440359626795
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.7587280273438	2	549.758746	1097.50294	-0.29913	-0.00016445	-0.31744	-0.00017451	-0.61657	-0.00033896	549.758560555874	68.446	1.3095	68.154	67.781	69.091	-0.29267					95	33	5	0	0	0	0.014034	4	8165	8154;8165;8177;8190		166.68	89.361	1	12615000			74346	9307	51886	51970	81697;81698;81699;81700	81698					-0.041911440359626795
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.7584838867188	2	549.758746	1097.50294	-0.11929	-6.5579E-05	-0.49842	-0.00027401	-0.6177	-0.00033959	549.7584634708202	68.159	1.5367	68.178	67.855	69.392	0.018913					112	40	5	0	0	0	0.013887	4	8087	8064;8075;8087;8100		195.81	97.185	1	15761000			74347	9307	51886	51970	81701;81702;81703;81704	81703					-0.041911440359626795
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.7584228515625	2	549.758746	1097.50294	-0.60494	-0.00033257	0.54356	0.00029883	-0.061373	-3.374E-05	549.7589048183684	68.569	0.72518	68.307	67.98	68.706	-0.26166					41	17	4	0	0	0	0.19099	1	7932	7932		90.37	31.588	1	1174500			74348	9307	51886	51970	81705	81705					-0.041911440359626795
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.758544921875	2	549.758746	1097.50294	0.31786	0.00017474	-0.30507	-0.00016771	0.012791	7.0318E-06	549.7584423794627	68.522	0.92365	68.279	67.992	68.916	-0.24277					52	22	5	0	0	0	0.10174	2	7927	7927;7938		110.12	31.856	1	1603300			74349	9307	51886	51970	81706;81707	81706					-0.041911440359626795
SLYDYNPNL	9	Unmodified	_SLYDYNPNL_					0	0	0		ENST00000565932.5_1_16:28734455-28746831:+|nuORF;nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	ENST00000565932.5_1_16:28734455-28746831:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.7589111328125	2	549.758746	1097.50294	0.27627	0.00015188	-0.3501	-0.00019247	-0.073828	-4.0588E-05	549.7584453016887	68.522	0.76039	68.292	68	68.76	-0.23048					43	18	3	0	0	0	0.077175	2	7910	7910;7919		118.74	46.866	1	2040600			74350	9307	51886	51970	81708;81709	81708					-0.041911440359626795
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(140)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2753295898438	2	550.276249	1098.53795	-0.20207	-0.00011119	-0.59262	-0.0003261	-0.79469	-0.0004373	550.2758368032428	50.971	0.81854	50.971	50.577	51.395	0					73	22	5	0	0	0	0.030064	4	5385	5363;5373;5385;5399		141.52	56.36	1	6146500			74351	6066	51887	51971	81710;81711;81712;81713	81712		254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(130)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.276123046875	2	550.276249	1098.53795	-0.1824	-0.00010037	0.14499	7.9786E-05	-0.037404	-2.0583E-05	550.2763505771298	51.738	0.87756	51.738	51.395	52.273	0					70	24	4	0	0	0	0.041068	3	5504	5493;5504;5516		132.76	61.462	1	6550500			74352	6066	51887	51971	81714;81715;81716	81715		254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(140)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.2757568359375	2	550.276249	1098.53795	-0.78301	-0.00043087	-0.12813	-7.0509E-05	-0.91115	-0.00050138	550.276090595541	51.139	0.74717	50.99	50.657	51.404	-0.14915					67	20	4	0	0	0	0.030064	4	5369	5369;5379;5390;5405		141.52	70.225	1	6497200			74353	6066	51887	51971	81717;81718;81719;81720	81717		254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(130)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.2762451171875	2	550.276249	1098.53795	-0.93567	-0.00051488	0.94084	0.00051772	0.0051695	2.8446E-06	550.2767396809572	51.918	0.88115	51.771	51.406	52.287	-0.14735					69	22	4	0	0	0	0.041068	3	5504	5494;5504;5516		132.76	53.803	1	8395700			74354	6066	51887	51971	81721;81722;81723	81722		254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(120)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2747192382812	2	550.276249	1098.53795	-1.0708	-0.00058923	0.037497	2.0634E-05	-1.0333	-0.00056859	550.2761952346447	50.82	0.75734	50.901	50.576	51.333	0.080994					75	20	5	0	0	0	0.071379	4	5279	5269;5279;5292;5306		120.87	55.403	1	6377400			74355	6066	51887	51971	81724;81725;81726;81727	81725		254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_		SLYEM(1)VSRV		SLYEM(130)VSRV	0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2761840820312	2	550.276249	1098.53795	-1.3952	-0.00076776	1.3064	0.00071891	-0.088786	-4.8857E-05	550.2769257687336	51.61	0.85516	51.697	51.339	52.195	0.087006					73	23	4	0	0	0	0.041068	3	5412	5401;5412;5425		132.76	55.44	1	7042300			74356	6066	51887	51971	81728;81729;81730	81729		254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_					0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.276249	1098.53795	0.54208	0.0002983	-1.0649	-0.00058598	-0.5228	-0.00028769	550.2754060741972	50.996	0.41475	50.884	50.675	51.09	-0.11163	-0.063103	-0.00064386	NaN	141.52	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351120			74357	6066	51887	51971				254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_					0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.276249	1098.53795	0.073668	4.0538E-05	-0.20111	-0.00011067	-0.12744	-7.0128E-05	550.2764791427388	51.746	0.43849	51.627	51.394	51.833	-0.11875	-0.094754	-0.0011133	NaN	132.76	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576580			74358	6066	51887	51971				254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_					0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.276249	1098.53795	-0.19052	-0.00010484	-0.74519	-0.00041006	-0.93571	-0.0005149	550.2757517217703	51.289	0.41823	51.013	50.816	51.235	-0.27643	0.065611	-0.00029201	NaN	141.52	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459950			74359	6066	51887	51971				254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_					0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.276249	1098.53795	-2.1691	-0.0011936	2.3372	0.0012861	0.16804	9.247E-05	550.2776567829217	52.047	0.50658	51.777	51.548	52.054	-0.26903	0.05555	0.0016802	NaN	132.76	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612960			74360	6066	51887	51971				254			-0.007382244996506415
SLYEMVSRV	9	Oxidation (M)	_SLYEM(Oxidation (M))VSRV_					0	0	1		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.276249	1098.53795	0.69031	0.00037986	-1.2163	-0.00066933	-0.52603	-0.00028946	550.275414119308	51.106	0.49545	50.926	50.647	51.143	-0.18071	-0.021715	-0.00081055	NaN	141.52	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508490			74361	6066	51887	51971				254			-0.007382244996506415
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.2789306640625	2	542.278792	1082.54303	0.012536	6.7977E-06	-0.12982	-7.04E-05	-0.11729	-6.3602E-05	542.2786379432164	63.463	1.3731	63.463	63.126	64.499	0					101	37	4	0	0	0	0.079716	2	7417	7417;7428		117.81	48.183	1	10565000			74362	6066	51887	51972	81731;81732	81731					0.005060793629809268
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2783813476562	2	542.278792	1082.54303	-0.53315	-0.00028911	0.39853	0.00021611	-0.13462	-7.3001E-05	542.2789101048246	63.679	1.4999	63.428	63.084	64.584	-0.25141					105	40	4	0	0	0	0.048057	2	7418	7418;7427		129.42	49.709	1	10446000			74363	6066	51887	51972	81733;81734	81733					0.005060793629809268
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.279052734375	2	542.278792	1082.54303	0.81196	0.00044031	-0.91054	-0.00049377	-0.098581	-5.3458E-05	542.2781905449524	63.459	1.3326	63.513	63.162	64.495	0.054104					96	36	4	0	0	0	0.041068	3	7350	7338;7350;7362		132.76	58.503	1	9269200			74364	6066	51887	51972	81735;81736;81737	81736					0.005060793629809268
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.278792	1082.54303	-0.43621	-0.00023655	-1.429	-0.00077492	-1.8652	-0.0010115	542.2786602043112	63.739	1.0925	63.511	62.974	64.066	-0.22773	0.01516	-0.0013011	NaN	132.76	90	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1716300			74365	6066	51887	51972							0.005060793629809268
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.278792	1082.54303	-0.32358	-0.00017547	-0.096513	-5.2337E-05	-0.42009	-0.00022781	542.2786134261297	63.701	0.69777	63.509	63.263	63.961	-0.19243	0.01288	0.0001441	NaN	132.76	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1822300			74366	6066	51887	51972							0.005060793629809268
SLYEMVSRV	9	Unmodified	_SLYEMVSRV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.278792	1082.54303	-0.53036	-0.0002876	0.061279	3.323E-05	-0.46908	-0.00025437	542.278720930439	63.811	0.68079	63.553	63.276	63.956	-0.25824	0.056421	0.00031523	NaN	132.76	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1860200			74367	6066	51887	51972							0.005060793629809268
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.7557067871094	2	462.755475	923.496398	-0.59232	-0.0002741	0.91291	0.00042246	0.3206	0.00014836	462.7556430508844	73.275	0.60618	73.275	72.91	73.516	0					46	15	5	0	0	0	0.096521	1	8945	8945		111.65	26.289	1	2198200			74368	6489	51888	51973	81738	81738					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.75567626953125	2	462.755475	923.496398	0.33263	0.00015393	-0.14516	-6.7174E-05	0.18747	8.6751E-05	462.7552114689752	73.266	0.61356	73.275	72.944	73.558	0.0096512					46	15	4	0	0	0	0.039744	1	8860	8860		133.81	48.897	1	2039000			74369	6489	51888	51973	81739	81739					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.7552185058594	2	462.755475	923.496398	-0.41136	-0.00019036	0.41898	0.00019388	0.0076161	3.5244E-06	462.75549687801646	73.537	0.62955	73.273	72.977	73.607	-0.26479					43	15	4	0	0	0	0.06122	1	8649	8649		124.59	25.219	1	1397400			74370	6489	51888	51973	81740	81740					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.7557067871094	2	462.755475	923.496398	-0.32638	-0.00015104	0.40381	0.00018686	0.077425	3.5829E-05	462.75547605974606	73.353	0.71682	73.162	72.886	73.602	-0.19027					50	17	5	0	0	0	0.06122	2	8621	8611;8621		124.59	17.311	1	1808300			74371	6489	51888	51973	81741;81742	81742					0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.755475	923.496398	-0.2192	-0.00010144	0.42177	0.00019518	0.20257	9.374E-05	462.7554371761599	73.606	0.52666	73.334	73.05	73.577	-0.27126	0.063515	2.5766E-05	NaN	133.81	41	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1672600			74372	6489	51888	51973							0.03158962803343002
SLYGGTITI	9	Unmodified	_SLYGGTITI_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.755475	923.496398	-0.12947	-5.9911E-05	0.23347	0.00010804	0.10401	4.8129E-05	462.755397131415	73.582	0.5948	73.305	73.01	73.605	-0.2769	0.034002	-0.00014851	NaN	133.81	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955570			74373	6489	51888	51973							0.03158962803343002
SLYHYSKIA	9	Unmodified	_SLYHYSKIA_					0	0	0		nc|ENSG00000088002|O00204-2|SULT2B1;ENSG00000088002|ENST00000201586|SULT2B1	nc|ENSG00000088002|O00204-2|SULT2B1	nc|ENSG00000088002|O00204-2|SULT2B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.2855224609375	2	541.287474	1080.5604	-0.016106	-8.7182E-06	-4.1638	-0.0022538	-4.1799	-0.0022625	541.2851537360907	22.466	1.1169	22.277	21.816	22.933	-0.18894					54	23	4	0	0	0	0.42604	1	802	802		64.207	0.67341	1	1044700			74374	1859	51889	51974	81743	81743					0.023337429602861448
SLYIHMFL	8	Unmodified	_SLYIHMFL_					0	0	0		MC5R|p.A212V|1|0.06|ENSG00000176136|chr18:13826400-13826400|C/T|missense_variant;ENSG00000176136|ENST00000589410|MC5R	MC5R|p.A212V|1|0.06|ENSG00000176136|chr18:13826400-13826400|C/T|missense_variant	MC5R|p.A212V|1|0.06|ENSG00000176136|chr18:13826400-13826400|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2710571289062	2	512.270238	1022.52592	-0.053609	-2.7462E-05	1.2647	0.00064784	1.211	0.00062038	512.2707167423686	106.79	1.4501	106.67	105.9	107.35	-0.1238					126	55	4	0	0	0	1.0239	1	13325	13325		33.516	0.022601	1	4944800			74375	8612	51890	51975	81744	81744					0.015562035478410507
SLYIILVLT	9	Unmodified	_SLYIILVLT_					0	0	0			REV__ENSG00000171054|ENST00000338616|OR13H1	REV__ENSG00000171054|ENST00000338616|OR13H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.8109130859375	2	517.828443	1033.64233	-2.0841	-0.0010792	-2.8695	-0.0014859	-4.9535	-0.0025651	517.8278863708845	60.531	0.44643	60.61	60.392	60.839	0.078888					21	11	3	0	0	0	0.024506	1	6876	6876		10.866	0	1	103810	+		74376	26536	51891	51976	81745	81745					0.12685845319356304
SLYKKHCHK	9	Unmodified	_SLYKKHCHK_					0	0	0			REV__nc|ENSG00000037280|P35916-1|FLT4	REV__nc|ENSG00000037280|P35916-1|FLT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.279541015625	2	572.308218	1142.60188	0.5561	0.00031826	-1.6099	-0.00092135	-1.0538	-0.00060308	572.3069388981103	78.171	0.92979	77.939	77.33	78.26	-0.23196					38	21	3	0	0	0	0.024436	1	9351	9351		38.806	14.287	1	142140	+		74377	20068	51892	51977	81746	81746					0.0362860044797344
SLYNIRLL	8	Unmodified	_SLYNIRLL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENST00000492174.1_1_9:138741977-138754403:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.7953186035156	2	496.300384	990.586216	-0.58185	-0.00028877	0.36038	0.00017886	-0.22147	-0.00010992	496.3001027499686	39.172	0.77066	38.949	38.416	39.186	-0.22311					26	20	2	0	0	0	0.027866	1	3243	3243		33.516	10.473	1	258300			74378	4429	51893	51978	81747	81747					0.0905463720255284
SLYPIAVLI	9	Unmodified	_SLYPIAVLI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.8072204589844	2	494.807511	987.600469	0.41042	0.00020308	0.74346	0.00036787	1.1539	0.00057094	494.80729398398944	99.454	1.5094	99.451	98.349	99.858	-0.0038834					84	34	4	0	0	0	0.94809	1	12655	12655		29.15	0	1	260530			74379	2693	51894	51979	81748	81748					0.10617289630863525
SLYQGRVTL	9	Unmodified	_SLYQGRVTL_					0	0	0			REV__ENST00000544802.5_1_7:72620752-72620791:+|nuORF	REV__ENST00000544802.5_1_7:72620752-72620791:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2557983398438	2	518.792924	1035.57129	-0.079871	-4.1437E-05	-0.67395	-0.00034964	-0.75382	-0.00039108	519.2939289863737	50.452	0.33084	50.346	50.127	50.457	-0.10558					13	8	2	0	0	0	0.024397	1	5105	5105		47.657	5.2612	1	251910	+		74380	34813	51895	51980	81749	81749					0.05493145334594374
SLYSLRESL	9	Unmodified	_SLYSLRESL_					0	0	0		ENSG00000172482|ENST00000307503|AGXT	ENSG00000172482|ENST00000307503|AGXT	ENSG00000172482|ENST00000307503|AGXT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	534.2711791992188	2	534.290214	1066.56587	-0.16641	-8.8912E-05	-0.26363	-0.00014085	-0.43004	-0.00022977	534.2899776005646	59.144	0.58337	59.23	58.957	59.54	0.085682					35	15	3	0	0	0	0.023061	1	6700	6700		79.713	19.419	1	526830			74381	8282	51896	51981	81750	81750					0.035254217521242026
SLYSLRESL	9	Unmodified	_SLYSLRESL_					0	0	0		ENSG00000172482|ENST00000307503|AGXT	ENSG00000172482|ENST00000307503|AGXT	ENSG00000172482|ENST00000307503|AGXT	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.290214	1066.56587	0.55304	0.00029548	-0.73764	-0.00039412	-0.18461	-9.8633E-05	534.2900260993974	59.557	0.52446	59.359	59.05	59.575	-0.19742	0.073159	-0.00014153	NaN	79.713	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396260			74382	8282	51896	51981							0.035254217521242026
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7828369140625	2	537.782556	1073.55056	-0.99979	-0.00053767	0.6827	0.00036714	-0.31709	-0.00017053	537.782821645066	50.099	0.97004	50.099	49.805	50.775	0					73	28	4	0	0	0	0.013924	2	5225	5225;5237		167.23	89.911	1	5089100			74383	9358	51897	51982	81751;81752	81751					0.016725549548937124
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7823486328125	2	537.782556	1073.55056	-0.50056	-0.00026919	0.34869	0.00018752	-0.15186	-8.1669E-05	537.782585720664	50.296	0.76552	50.145	49.889	50.655	-0.1512					65	22	4	0	0	0	0.071379	1	5249	5249		120.87	46.613	1	5340500			74384	9358	51897	51982	81753	81753					0.016725549548937124
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.78271484375	2	537.782556	1073.55056	-0.8416	-0.0004526	0.67057	0.00036062	-0.17103	-9.1979E-05	537.7828117950324	49.958	0.74397	50.039	49.7	50.444	0.08099					64	21	4	0	0	0	0.015752	2	5119	5119;5138		158.07	78.624	1	5690500			74385	9358	51897	51982	81754;81755	81754					0.016725549548937124
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.7831420898438	2	537.782556	1073.55056	-0.12842	-6.906E-05	0.40707	0.00021891	0.27865	0.00014985	537.7824754723132	50.104	0.7855	49.998	49.599	50.385	-0.10558					62	20	4	0	0	0	0.10464	2	5089	5078;5089		109.48	48.506	1	3471800			74386	9358	51897	51982	81756;81757	81757					0.016725549548937124
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7821655273438	2	537.782556	1073.55056	-0.2552	-0.00013724	0.63137	0.00033954	0.37617	0.0002023	537.7825821452909	50.4	1.0392	50.12	49.51	50.549	-0.27977					73	27	4	0	0	0	0.20652	1	5110	5110		88.177	34.825	1	3225700			74387	9358	51897	51982	81758	81758					0.016725549548937124
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7817993164062	2	537.782556	1073.55056	-0.3682	-0.00019801	0.60624	0.00032603	0.23804	0.00012802	537.7826052309225	50.213	0.78143	50.032	49.681	50.462	-0.18071					65	20	4	0	0	0	0.29609	1	5088	5088		76.17	26.728	1	3483100			74388	9358	51897	51982	81759	81759					0.016725549548937124
SLYSYFSP	8	Unmodified	_SLYSYFSP_					0	0	0		SLC9C2|p.F199Lfs*19|1|0.1|ENSG00000162753|chr1:173583549-173583549|A/-|frameshift_variant;ENSG00000162753|ENST00000367714|SLC9C2	SLC9C2|p.F199Lfs*19|1|0.1|ENSG00000162753|chr1:173583549-173583549|A/-|frameshift_variant;ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2195739746094	2	482.226551	962.438549	-0.14592	-7.0367E-05	-1.2176	-0.00058718	-1.3636	-0.00065755	482.2258827769982	31.975	1.0998	31.818	31.263	32.363	-0.15772					36	26	2	0	0	0	0.027866	1	2197	2197		24.203	0	1	81580			74389	6987;37896	51898	51983	81760	81760					-0.0441729912208757
SLYTHQNF	8	Unmodified	_SLYTHQNF_					0	0	0			REV__nc|ENSG00000197050|Q8TAQ5-2|ZNF420	REV__nc|ENSG00000197050|Q8TAQ5-2|ZNF420	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7665100097656	2	505.240524	1008.46649	-0.097468	-4.9245E-05	-3.4842	-0.0017604	-3.5817	-0.0018096	505.238790873702	63.829	0.93477	63.601	63.328	64.263	-0.22773					43	23	3	0	0	0	0.027866	1	7207	7207		63.306	5.495	1	1195300	+		74390	28255	51899	51984	81761	81761					-0.03739976142003343
SLYTSKPLD	9	Unmodified	_SLYTSKPLD_					0	0	0		CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3075866699219	2	512.27149	1022.52843	0.022651	1.1604E-05	-0.9312	-0.00047703	-0.90855	-0.00046543	512.2707709748192	67.964	0.75543	67.983	67.743	68.499	0.018921					44	19	3	0	0	0	0.024427	1	8055	8055		34.173	23.907	1	1460900			74391	237	51900	51985	81762	81762					0.01806330486465413
SLYTSKPLD	9	Unmodified	_SLYTSKPLD_					0	0	0		CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.27149	1022.52843	0.0071389	3.657E-06	-1.0695	-0.00054786	-1.0623	-0.0005442	512.270629263246	67.892	0.72487	67.892	67.644	68.369	0	-0.10704	-0.00032533	NaN	47.657	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1493800			74392	237	51900	51985							0.01806330486465413
SLYTSKPLD	9	Unmodified	_SLYTSKPLD_					0	0	0		CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.27149	1022.52843	0.11052	5.6616E-05	-0.62382	-0.00031956	-0.5133	-0.00026295	512.2710350714624	68.341	0.77419	68.08	67.734	68.508	-0.26102	0.080994	0.00013126	NaN	47.657	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931940			74393	237	51900	51985							0.01806330486465413
SLYTSKPLD	9	Unmodified	_SLYTSKPLD_					0	0	0		CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.27149	1022.52843	0.31575	0.00016175	-0.47313	-0.00024237	-0.15738	-8.0621E-05	512.2710541558176	68.297	0.68257	68.063	67.756	68.439	-0.23375	0.063854	0.00028565	NaN	47.657	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	969070			74394	237	51900	51985							0.01806330486465413
SLYTSKPLD	9	Unmodified	_SLYTSKPLD_					0	0	0		CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	CDH10|p.R449L|1|0.2|ENSG00000040731|chr5:24505159-24505159|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	512.27149	1022.52843	0.38007	0.0001947	-0.84767	-0.00043424	-0.46761	-0.00023954	512.2709134326323	68.253	0.76502	68.022	67.715	68.48	-0.23048	0.023034	-9.8089E-05	NaN	47.657	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	933590			74395	237	51900	51985							0.01806330486465413
SLYYRIQLF	9	Unmodified	_SLYYRIQLF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.55712890625	3	401.557125	1201.64954	0.62055	0.00024919	-0.3306	-0.00013276	0.28995	0.00011643	401.55690515559246	72.612	0.72801	72.335	72.028	72.756	-0.2769					44	16	4	0	0	0	0.74711	1	8518	8518		42.864	2.8061	1	799930	+		74396	28328	51901	51986	81763	81763					0.056785779197980446
SLYYRIQLF	9	Unmodified	_SLYYRIQLF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	401.557125	1201.64954	1.2158	0.00048822	-0.90032	-0.00036153	0.3155	0.00012669	401.5566326583334	72.614	0.80853	72.349	72.001	72.81	-0.26479	0.062642	-0.00081945	NaN	42.864	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812220	+		74397	28328	51901	51986							0.056785779197980446
SLYYRIQLF	9	Unmodified	_SLYYRIQLF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	401.557125	1201.64954	-0.79961	-0.00032109	0.924	0.00037104	0.12439	4.9951E-05	401.55738747960055	72.373	0.79871	72.175	71.869	72.667	-0.19811	-0.11137	0.0013783	NaN	42.864	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	800940	+		74398	28328	51901	51986							0.056785779197980446
SMALPPRYR	9	Unmodified	_SMALPPRYR_					0	0	0			REV__ENST00000547085.1_1_12:112600805-112601012:-|nuORF	REV__ENST00000547085.1_1_12:112600805-112601012:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.31640625	2	545.794943	1089.57533	-0.42737	-0.00023326	-2.7017	-0.0014746	-3.1291	-0.0017078	546.2949637615376	87.618	0.6118	87.48	87.289	87.901	-0.13734					21	14	2	0	0	0	0.024506	1	10651	10651		23.042	3.0457	1	132430	+		74399	34860	51902	51987	81764	81764					0.03412911556620202
SMASQQSLR	9	Unmodified	_SMASQQSLR_					0	0	0		ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.3063049316406	2	504.250566	1006.48658	0.49137	0.00024778	-0.13902	-7.0099E-05	0.35236	0.00017768	504.250927632973	70.124	1.3568	69.831	68.713	70.07	-0.29292					54	34	2	0	0	0	0.024405	1	8450	8450		20.947	5.3051	1	1058100			74400	17197	51903	51988	81765	81765					-0.01640548473687886
SMASQQSLR	9	Unmodified	_SMASQQSLR_					0	0	0		ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.250566	1006.48658	-0.11005	-5.5495E-05	0.23477	0.00011838	0.12472	6.289E-05	504.25106850829656	69.809	1.3133	69.809	68.68	69.993	0	0.062496	0.0026428	NaN	20.947	54	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981780			74401	17197	51903	51988							-0.01640548473687886
SMASQQSLR	9	Unmodified	_SMASQQSLR_					0	0	0		ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.250566	1006.48658	-0.28885	-0.00014565	1.7392	0.000877	1.4504	0.00073134	504.2520385434177	69.877	1.482	69.89	68.72	70.202	0.012421	0.14302	0.00416	NaN	20.947	70	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958500			74402	17197	51903	51988							-0.01640548473687886
SMASQQSLR	9	Unmodified	_SMASQQSLR_					0	0	0		ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	ENST00000583548.1_1_17:73201815-73204665:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.250566	1006.48658	-0.49636	-0.00025029	-2.892	-0.0014583	-3.3884	-0.0017086	504.2490812773323	69.725	0.96207	69.457	68.912	69.874	-0.26725	-0.28934	-0.00051062	NaN	20.947	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187300			74403	17197	51903	51988							-0.01640548473687886
SMDDPNFTTS	10	Unmodified	_SMDDPNFTTS_					0	0	0			REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	REV__nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.3084106445312	2	557.721504	1113.42845	-0.85997	-0.00047962	0.28022	0.00015628	-0.57975	-0.00032334	557.7207963951977	61.437	0.29135	61.261	61.122	61.413	-0.1761					10	6	2	0	0	0	0.03519	1	6877	6877		18.262	0	1	62671	+		74404	21877	51904	51989	81766	81766					-0.12372274909648695
SMDESKQVET	10	Unmodified	_SMDESKQVET_					0	0	0		nc|ENSG00000163431|P29536-2|LMOD1;ENSG00000163431|ENST00000367288|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2852783203125	2	577.255711	1152.49687	-1.3434	-0.00077551	0.517	0.00029844	-0.82644	-0.00047707	577.2558975215863	28.976	0.30309	28.731	28.621	28.924	-0.24524					10	6	2	0	0	0	0.03519	1	1752	1752		18.262	4.125	1	80480			74405	7077	51905	51990	81767	81767					-0.07328030329767898
SMDLISTLISV	11	Unmodified	_SMDLISTLISV_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	590.3053588867188	2	589.820489	1177.62643	-0.31295	-0.00018458	3.9566	0.0023337	3.6436	0.0021491	589.8232165113214	87.45	0.29543	87.314	87.178	87.474	-0.13614					10	6	2	0	0	0	0.024723	1	10649	10649		30.318	9.3708	1	48310	+		74406	20058	51906	51991	81768	81768					0.044717710201666705
SMEGTDLGET	10	Unmodified	_SMEGTDLGET_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2618408203125	2	520.216054	1038.41756	-0.8307	-0.00043214	-1.1267	-0.00058613	-1.9574	-0.0010183	520.7165251100879	22.704	0.23028	22.704	22.572	22.803	0					8	4	3	0	0	0	0.03519	1	827	827		56.721	12.604	1	16836	+		74407	20912	51907	51992	81769	81769					-0.10011677283910103
SMESGVLVAM	10	Unmodified	_SMESGVLVAM_					0	0	0		nc|ENSG00000262980|Q8NGH6|OR52L2P;ENSG00000183313|ENST00000332249|OR52L1	nc|ENSG00000262980|Q8NGH6|OR52L2P	nc|ENSG00000262980|Q8NGH6|OR52L2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.3059387207031	2	512.246103	1022.47765	0.15969	8.1803E-05	0.88173	0.00045166	1.0414	0.00053347	512.2463550227591	66.164	0.3118	66.164	65.95	66.262	0					10	7	2	0	0	0	0.03519	1	7848	7848		79.451	10.966	1	329330			74408	9215	51908	51993	81770	81770					-0.032686581543771354
SMEWGARTL	9	Unmodified	_SMEWGARTL_					0	0	0		nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.77685546875	2	525.755484	1049.49641	-0.73259	-0.00038516	4.1587	0.0021865	3.4261	0.0018013	525.7572352814174	48.83	0.79469	48.896	48.588	49.383	0.066799					53	21	3	0	0	0	0.024495	1	5004	5004		26.693	0	1	2023400			74409	18611	51909	51994	81771	81771					-0.026353604683208687
SMEWGARTL	9	Unmodified	_SMEWGARTL_					0	0	0		nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.755484	1049.49641	-0.9759	-0.00051309	4.0369	0.0021224	3.061	0.0016093	525.7577149817994	48.952	0.7961	48.851	48.544	49.34	-0.1008	-0.037676	0.0003871	NaN	47.657	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763420			74410	18611	51909	51994							-0.026353604683208687
SMEWGARTL	9	Unmodified	_SMEWGARTL_					0	0	0		nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.755484	1049.49641	-0.38319	-0.00020146	3.5291	0.0018554	3.1459	0.001654	525.7573872150415	49.197	0.74784	48.917	48.611	49.359	-0.27977	0.028305	-0.00014688	NaN	47.657	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	891700			74411	18611	51909	51994							-0.026353604683208687
SMFEALRDT	9	Unmodified	_SMFEALRDT_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.2586669921875	2	535.252774	1068.491	-0.59636	-0.0003192	-2.6311	-0.0014083	-3.2274	-0.0017275	535.2499119434066	66.365	0.57885	66.084	65.672	66.251	-0.28149					34	14	3	0	0	0	0.024263	1	7889	7889		51.335	0	1	1598600			74412	1642	51910	51995	81772	81772					-0.040510840507977264
SMFFINQTD	9	Unmodified	_SMFFINQTD_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3154296875	2	551.747324	1101.4801	-0.54448	-0.00030041	2.8334	0.0015633	2.2889	0.0012629	551.7483293984608	72.712	0.38071	72.514	72.33	72.71	-0.19811					16	8	3	0	0	0	0.024495	1	8503	8503		19.997	0	1	135320	+		74413	28132	51911	51996	81773	81773					-0.06658486425089905
SMFPTMGRADK	11	2 Oxidation (M)	_SM(Oxidation (M))FPTM(Oxidation (M))GRADK_		SM(1)FPTM(1)GRADK		SM(54)FPTM(54)GRADK	0	0	2			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.86212158203125	3	424.861891	1271.56384	-0.57663	-0.00024499	1.0394	0.00044161	0.46278	0.00019662	424.86227982475646	29.854	1.2237	29.681	29.025	30.249	-0.17258					72	28	5	0	0	0	0.85525	1	1866	1866		54.343	8.4352	1	1220500	+		74414	21449	51912	51997	81774	81774		654;655			-0.0610769831964717
SMFPTMGRADK	11	2 Oxidation (M)	_SM(Oxidation (M))FPTM(Oxidation (M))GRADK_					0	0	2			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	424.861891	1271.56384	-1.5908	-0.00067588	1.5157	0.00064397	-0.075126	-3.1918E-05	424.8622059017495	30.213	0.36858	30.213	30.057	30.426	0	0.35073	0.0010305	NaN	54.343	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35661	+		74415	21449	51912	51997				654;655			-0.0610769831964717
SMFPTMGRADK	11	2 Oxidation (M)	_SM(Oxidation (M))FPTM(Oxidation (M))GRADK_					0	0	2			REV__nc|ENSG00000104517|O95071-2|UBR5	REV__nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	424.861891	1271.56384	-0.83598	-0.00035517	0.53424	0.00022698	-0.30173	-0.00012819	424.86213890191846	29.918	0.32868	29.997	29.763	30.091	0.078346	0.13457	-0.00022051	NaN	54.343	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54857	+		74416	21449	51912	51997				654;655			-0.0610769831964717
SMGRRPSRD	9	Unmodified	_SMGRRPSRD_					0	0	0		ENST00000328090.9_2_10:5727032-5754817:+|nuORF;ENST00000477043.5_1_10:5727032-5751560:+|nuORF	ENST00000328090.9_2_10:5727032-5754817:+|nuORF	ENST00000328090.9_2_10:5727032-5754817:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2671508789062	2	531.267081	1060.51961	0.23694	0.00012588	0.062279	3.3087E-05	0.29921	0.00015896	531.2668634709813	20.64	0.83728	20.444	20.138	20.975	-0.19577					35	16	4	0	0	0	0.67687	1	567	567		47.657	6.8792	1	577930			74417	12300	51913	51998	81775	81775					-0.00822921630970086
SMHTTHNHF	9	Unmodified	_SMHTTHNHF_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.2855834960938	2	556.240532	1110.46651	-0.71342	-0.00039684	1.7683	0.00098362	1.0549	0.00058679	556.2416263670555	43.638	0.27924	43.401	43.211	43.49	-0.23736					11	7	2	0	0	0	0.024535	1	3985	3985		18.324	0	1	135930	+		74418	20908	51914	51999	81776	81776					-0.08430299413657849
SMHTTHNHF	9	Unmodified	_SMHTTHNHF_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	556.240532	1110.46651	-0.49299	-0.00027422	0.41909	0.00023312	-0.073901	-4.1107E-05	556.241412645312	43.22	0.32734	43.22	43.113	43.44	0	-0.098828	-0.0022856	NaN	18.324	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87460	+		74419	20908	51914	51999							-0.08430299413657849
SMHTTHNHF	9	Unmodified	_SMHTTHNHF_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	556.240532	1110.46651	-0.77991	-0.00043382	3.3533	0.0018652	2.5734	0.0014314	556.2421277156843	43.384	0.33038	43.245	43.063	43.393	-0.13929	-0.073342	0.00097857	NaN	18.324	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75802	+		74420	20908	51914	51999							-0.08430299413657849
SMHTTHNHF	9	Unmodified	_SMHTTHNHF_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.240532	1110.46651	-0.38857	-0.00021614	3.0469	0.0016948	2.6583	0.0014787	556.2421492234473	43.521	0.31705	43.408	43.182	43.499	-0.11253	0.089897	0.00063771	NaN	18.324	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189410	+		74421	20908	51914	51999							-0.08430299413657849
SMILLMAI	8	2 Oxidation (M)	_SM(Oxidation (M))ILLM(Oxidation (M))AI_		SM(1)ILLM(1)AI		SM(60)ILLM(60)AI	0	0	2		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	462.25079345703125	2	462.250657	922.486761	-0.37947	-0.00017541	0.28198	0.00013034	-0.097498	-4.5068E-05	462.2507152282238	30.387	1.0917	30.143	29.82	30.911	-0.24415					63	25	4	0	0	0	0.78609	1	1930	1930		60.294	6.9425	1	5402100			74422	10193	51915	52000	81777	81777		429;430			0.022417352019488135
SMIQGYTMRRD	11	Unmodified	_SMIQGYTMRRD_					0	0	0		ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	453.2180480957031	3	453.216556	1356.62784	0.80441	0.00036457	1.7927	0.00081247	2.5971	0.001177	453.2173920642358	59.454	0.79594	59.256	58.969	59.765	-0.19742					57	19	4	0	0	0	0.70094	1	6591	6591		63.694	6.5453	1	2471900			74423	8859	51916	52001	81778	81778					-0.03620918162732778
SMIQGYTMRRD	11	Unmodified	_SMIQGYTMRRD_					0	0	0		ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	ENSG00000179002|ENST00000375371|TAS1R2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	453.2178649902344	3	453.216556	1356.62784	0.37349	0.00016927	1.9477	0.00088274	2.3212	0.001052	453.2174593362966	59.478	0.75991	59.23	58.888	59.648	-0.24841					63	18	6	0	0	0	0.93575	1	6571	6571		49.466	7.1278	1	2299600			74424	8859	51916	52001	81779	81779					-0.03620918162732778
SMIRSGSSL	9	Oxidation (M)	_SM(Oxidation (M))IRSGSSL_		SM(1)IRSGSSL		SM(99)IRSGSSL	0	0	1		nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2381286621094	2	477.239667	952.46478	0.34218	0.0001633	-3.8067	-0.0018167	-3.4645	-0.0016534	477.2378523213857	31.806	1.5894	31.806	31.089	32.679	0					130	39	5	0	0	0	0.15388	1	2141	2141		98.582	13.666	1	8385700			74425	995	51917	52002	81780	81780		30			-0.01335353222248159
SMIRSGSSL	9	Oxidation (M)	_SM(Oxidation (M))IRSGSSL_		SM(1)IRSGSSL		SM(110)IRSGSSL	0	0	1		nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.2383728027344	2	477.239667	952.46478	0.068142	3.252E-05	-3.5168	-0.0016783	-3.4486	-0.0016458	477.2380120493855	31.67	1.6273	31.682	31.041	32.669	0.011797					115	40	5	0	0	0	0.087669	2	2119	2097;2119		114.89	18.704	1	9503000			74426	995	51917	52002	81781;81782	81782		30			-0.01335353222248159
SMIRSGSSL	9	Oxidation (M)	_SM(Oxidation (M))IRSGSSL_		SM(1)IRSGSSL		SM(120)IRSGSSL	0	0	1		nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2379455566406	2	477.239667	952.46478	-0.14367	-6.8563E-05	-3.3158	-0.0015824	-3.4594	-0.001651	477.2380945594727	31.372	1.5962	31.441	30.912	32.508	0.068962					117	39	5	0	0	0	0.071379	2	2050	2050;2063		120.87	7.8776	1	7967800			74427	995	51917	52002	81783;81784	81783		30			-0.01335353222248159
SMKCLSLEY	9	Unmodified	_SMKCLSLEY_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.252197265625	2	537.253928	1072.4933	-0.20139	-0.0001082	-3.1799	-0.0017084	-3.3813	-0.0018166	537.2520443108327	80.865	0.76575	80.627	80.206	80.971	-0.23784					41	18	3	0	0	0	0.50848	1	9683	9683		58.782	0.97068	1	673880	+		74428	20189	51918	52003	81785	81785					-0.040043716373475036
SMKCLSLEY	9	Unmodified	_SMKCLSLEY_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	537.253928	1072.4933	-0.20139	-0.0001082	-3.1799	-0.0017084	-3.3813	-0.0018166	537.2520443108327	80.865	0.76575	80.627	80.206	80.971	-0.23784	0.01885	-0.0001152	NaN	58.782	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673880	+		74429	20189	51918	52003							-0.040043716373475036
SMKCLSLEY	9	Unmodified	_SMKCLSLEY_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.253928	1072.4933	-0.058043	-3.1184E-05	-3.3899	-0.0018212	-3.4479	-0.0018524	537.2519087273041	80.806	0.90395	80.6	80.092	80.996	-0.20632	-0.0081634	-0.00034085	NaN	58.782	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540440	+		74430	20189	51918	52003							-0.040043716373475036
SMKCLSLEY	9	Unmodified	_SMKCLSLEY_					0	0	0			REV__nc|ENSG00000054523|O60333-2|KIF1B	REV__nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.253928	1072.4933	-0.76853	-0.00041289	-2.5576	-0.0013741	-3.3262	-0.001787	537.2522765803405	80.743	0.90667	80.597	80.199	81.106	-0.146	-0.010687	0.00055338	NaN	58.782	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544690	+		74431	20189	51918	52003							-0.040043716373475036
SMKDELLQF	9	Unmodified	_SMKDELLQF_					0	0	0		nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;ENSG00000182606|ENST00000327628|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.25244140625	2	555.778625	1109.5427	0.17915	9.9568E-05	4.3435	0.002414	4.5226	0.0025136	555.7814406519336	57.383	0.39634	57.181	56.962	57.358	-0.20209					16	10	2	0	0	0	0.024539	1	6270	6270		35.618	1.4457	1	192000			74432	9147	51919	52004	81786	81786					-0.007693403568737267
SMKLTIKEI	9	Unmodified	_SMKLTIKEI_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8173828125	2	531.81501	1061.61547	0.30294	0.00016111	2.8637	0.001523	3.1666	0.0016841	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.2101	1	11102	11102		87.696	5.4559	1	3405600			74433	5269	51920	52005	81787	81787					0.0871241343654674
SMKLTIKEI	9	Unmodified	_SMKLTIKEI_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8172607421875	2	531.81501	1061.61547	-0.094811	-5.0422E-05	3.426	0.001822	3.3312	0.0017716	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.71548	1	10825	10825		45.022	0.64502	1	4853400			74434	5269	51920	52005	81788	81788					0.0871241343654674
SMKTLTVEQL	10	Unmodified	_SMKTLTVEQL_					0	0	0			REV__KHDRBS3|p.E90V|1|0.08|ENSG00000131773|chr8:135542715-135542715|A/T|missense_variant	REV__KHDRBS3|p.E90V|1|0.08|ENSG00000131773|chr8:135542715-135542715|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.310791015625	2	575.312832	1148.61111	-1.6354	-0.00094086	-1.6567	-0.00095313	-3.2921	-0.001894	575.3116853963127	60.643	1.1222	60.722	60.28	61.402	0.078884					85	29	4	0	0	0	0.37509	1	6916	6916		101.25	2.6232	1	3676300	+		74435	36178	51921	52006	81789	81789					0.04274904222961595
SMLEDVQRA	9	Unmodified	_SMLEDVQRA_					0	0	0		ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7591552734375	2	524.758223	1047.50189	-0.59208	-0.0003107	0.24817	0.00013023	-0.34392	-0.00018047	524.7582935671572	46.463	0.84005	46.463	46.163	47.003	0					76	22	6	0	0	0	0.20652	1	4601	4601		88.177	27.205	1	3137600			74436	2780	51922	52007	81790	81790					-0.019956816764988616
SMLEDVQRA	9	Unmodified	_SMLEDVQRA_					0	0	0		ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7593994140625	2	524.758223	1047.50189	-0.9736	-0.0005109	0.75884	0.00039821	-0.21476	-0.0001127	524.7584762154835	46.573	0.88016	46.42	46.172	47.052	-0.15301					68	23	4	0	0	0	0.17845	1	4600	4600		93.143	29.837	1	2982200			74437	2780	51922	52007	81791	81791					-0.019956816764988616
SMLEDVQRA	9	Unmodified	_SMLEDVQRA_					0	0	0		ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	ENSG00000106344|ENST00000223073|RBM28	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.7607421875	2	524.758223	1047.50189	-0.054947	-2.8834E-05	-0.15202	-7.9773E-05	-0.20697	-0.00010861	524.7580162474075	46.486	0.85973	46.537	46.239	47.099	0.051399					63	23	4	0	0	0	0.15388	1	4544	4544		98.582	24.327	1	2981400			74438	2780	51922	52007	81792	81792					-0.019956816764988616
SMLGKAPKL	9	Unmodified	_SMLGKAPKL_					0	0	0			REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1	REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2847900390625	2	472.783513	943.552473	-0.38249	-0.00018083	4.1095	0.0019429	3.727	0.0017621	472.78690900922584	83.417	1.0734	83.444	83.046	84.119	0.026558					65	24	5	0	0	0	0.39228	1	10336	10336		66.429	3.123	1	3252700	+		74439	21904	51923	52008	81793	81793					0.07843892439143474
SMLLAAKQI	9	Unmodified	_SMLLAAKQI_					0	0	0		ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7904968261719	2	487.788795	973.563038	0.37956	0.00018514	3.3532	0.0016356	3.7327	0.0018208	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	0.72875	1	10235	10235		44.117	5.3107	1	2659000			74440	3581	51924	52009	81794	81794					0.0751987509358969
SMLMIAMQY	9	Unmodified	_SMLMIAMQY_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2547607421875	2	544.252874	1086.49119	-0.50777	-0.00027635	3.0899	0.0016817	2.5822	0.0014054	544.2542775407511	41.616	0.8116	41.388	40.888	41.699	-0.2278					47	20	4	0	0	0	0.29158	1	3685	3685		76.774	2.5191	1	616890			74441	4740	51925	52010	81795	81795					-0.048591236467927956
SMLMIAMQY	9	Unmodified	_SMLMIAMQY_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.252874	1086.49119	-0.48449	-0.00026369	4.6843	0.0025494	4.1998	0.0022857	544.2543375689435	41.361	0.64358	41.225	40.947	41.591	-0.13554	-0.10754	0.0011423	NaN	76.774	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	781850			74442	4740	51925	52010							-0.048591236467927956
SMLMIAMQY	9	Unmodified	_SMLMIAMQY_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.252874	1086.49119	-0.92284	-0.00050226	3.427	0.0018651	2.5041	0.0013629	544.2543964908821	41.614	0.82888	41.384	41.003	41.832	-0.23029	0.05158	-0.00022629	NaN	76.774	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802770			74443	4740	51925	52010							-0.048591236467927956
SMLNNIINL	9	Unmodified	_SMLNNIINL_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2817993164062	2	516.281334	1030.54812	0.063555	3.2812E-05	1.4596	0.00075357	1.5232	0.00078639	516.2811968208548	88.065	0.91614	88.065	87.767	88.683	0					68	21	4	0	0	0	0.057894	1	11092	11092		125.81	12.402	1	2178100			74444	18093	51926	52011	81796	81796					0.03406383225569698
SMLNNIINL	9	Unmodified	_SMLNNIINL_					0	0	0		nc|ENSG00000081277|Q13835|PKP1;ENSG00000081277|ENST00000367324|PKP1	nc|ENSG00000081277|Q13835|PKP1	nc|ENSG00000081277|Q13835|PKP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2821044921875	2	516.281334	1030.54812	0.15941	8.2302E-05	1.8112	0.00093511	1.9707	0.0010174	516.2811140869447	88.109	1.1594	88.127	87.639	88.798	0.018555					84	27	4	0	0	0	0.014454	1	11016	11016		185.55	45.579	1	1708100			74445	18093	51926	52011	81797	81797					0.03406383225569698
SMLRYIYSP	9	Unmodified	_SMLRYIYSP_					0	0	0			REV__ENST00000556668.1_1_14:75473249-75475888:+|nuORF	REV__ENST00000556668.1_1_14:75473249-75475888:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.7764282226562	2	565.289159	1128.56377	0.047455	2.6826E-05	1.5125	0.00085501	1.56	0.00088183	565.2902540419473	46.301	0.39938	46.205	46.039	46.438	-0.096653					13	10	2	0	0	0	0.024457	1	4453	4453		21.96	0	1	131510	+		74446	22482	51927	52012	81798	81798					0.004626697426147075
SMLSRTIQI	9	Unmodified	_SMLSRTIQI_					0	0	0		ENST00000453386.6_1_3:185635026-185635125:-|nuORF	ENST00000453386.6_1_3:185635026-185635125:-|nuORF	ENST00000453386.6_1_3:185635026-185635125:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.7943115234375	2	524.794609	1047.57467	-0.35708	-0.00018739	-2.001	-0.0010501	-2.3581	-0.0012375	524.7934044782385	70	0.39005	70	69.75	70.14	0					16	11	2	0	0	0	0.5973	1	8450	8450		52.937	1.744	1	1309500			74447	14548	51928	52013	81799	81799					0.05278072116925614
SMLSRTIQI	9	Unmodified	_SMLSRTIQI_					0	0	0		ENST00000453386.6_1_3:185635026-185635125:-|nuORF	ENST00000453386.6_1_3:185635026-185635125:-|nuORF	ENST00000453386.6_1_3:185635026-185635125:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	524.794609	1047.57467	0.53826	0.00028247	-2.3456	-0.0012309	-1.8073	-0.00094846	524.7931361382306	70.287	0.3423	69.994	69.795	70.137	-0.29291	-0.073458	-0.00019677	NaN	52.937	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811480			74448	14548	51928	52013							0.05278072116925614
SMLSRTIQI	9	Unmodified	_SMLSRTIQI_					0	0	0		ENST00000453386.6_1_3:185635026-185635125:-|nuORF	ENST00000453386.6_1_3:185635026-185635125:-|nuORF	ENST00000453386.6_1_3:185635026-185635125:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	524.794609	1047.57467	-0.16163	-8.4824E-05	-2.2759	-0.0011944	-2.4376	-0.0012792	524.7933175490367	70.197	0.47714	70.209	69.831	70.308	0.012421	0.14132	-0.00012371	NaN	52.937	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	832110			74449	14548	51928	52013							0.05278072116925614
SMLSSVVLPL	10	Unmodified	_SMLSSVVLPL_					0	0	0			REV__nc|ENSG00000162383|O00341-2|SLC1A7	REV__nc|ENSG00000162383|O00341-2|SLC1A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3028564453125	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	1.0271	1	11039	11039		42.396	0.96952	1	10615000	+		74450	25433	51929	52014	81800	81800					0.06840724545213561
SMLSSVVLPL	10	Unmodified	_SMLSSVVLPL_					0	0	0			REV__nc|ENSG00000162383|O00341-2|SLC1A7	REV__nc|ENSG00000162383|O00341-2|SLC1A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3033447265625	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	1.0781	1	10687	10687		35.618	0	1	14072000	+		74451	25433	51929	52014	81801	81801					0.06840724545213561
SMLSSVVLPL	10	Unmodified	_SMLSSVVLPL_					0	0	0			REV__nc|ENSG00000162383|O00341-2|SLC1A7	REV__nc|ENSG00000162383|O00341-2|SLC1A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3038940429688	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0142	1	10680	10680		44.117	4.864	1	14210000	+		74452	25433	51929	52014	81802	81802					0.06840724545213561
SMLTSPWQSEE	11	Unmodified	_SMLTSPWQSEE_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000509825.1_1_4:85672578-85676547:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	647.7862548828125	2	647.784635	1293.55472	-0.63309	-0.0004101	2.1269	0.0013778	1.4938	0.00096765	647.7860017688704	52.82	0.93496	52.63	52.348	53.283	-0.18982					66	23	5	0	0	0	1.0017	1	5478	5478		36.447	4.4126	1	4092300			74453	7116	51930	52015	81803	81803					-0.08031768404362083
SMLVFLQN	8	Unmodified	_SMLVFLQN_					0	0	0		ENST00000338435.8_2_2:191792170-191795208:+|nuORF	ENST00000338435.8_2_2:191792170-191795208:+|nuORF	ENST00000338435.8_2_2:191792170-191795208:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.2518005371094	2	476.252046	950.489538	-0.45829	-0.00021826	0.85447	0.00040694	0.39618	0.00018868	476.25224270399224	90.785	0.62161	90.785	90.511	91.133	0					42	14	4	0	0	0	0.94517	1	11508	11508		45.952	5.3793	1	1731000			74454	12438	51931	52016	81804	81804					0.012313266511114307
SMNTAPSLP	9	Unmodified	_SMNTAPSLP_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2253723144531	2	459.223485	916.432418	-0.63791	-0.00029294	4.3869	0.0020146	3.749	0.0017216	459.2256023031956	26.277	2.3769	26.041	25.593	27.97	-0.23603					166	59	4	0	0	0	0.80658	1	1366	1366		38.806	3.1879	1	35750000	+		74455	24185	51932	52017	81805	81805					-0.029141406252620072
SMPDFDLHL	9	Unmodified	_SMPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K4256E|1|0.15|ENSG00000124942|chr11:62521651-62521651|T/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.7491455078125	2	537.749867	1073.48518	-0.53749	-0.00028903	0.44906	0.00024148	-0.088427	-4.7551E-05	537.7499648979381	76.301	0.92994	76.033	75.665	76.595	-0.26806					62	22	4	0	0	0	0.55828	2	9056	9045;9056		55.504	8.4985	1	1591200			74456	4084	51933	52018	81806;81807	81807					-0.04862182562465023
SMPDFDLHL	9	Unmodified	_SMPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K4256E|1|0.15|ENSG00000124942|chr11:62521651-62521651|T/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7496337890625	2	537.749867	1073.48518	-0.37596	-0.00020217	0.28106	0.00015114	-0.094904	-5.1034E-05	537.7499085411697	76.272	1.0996	76.021	75.641	76.741	-0.25162					68	26	3	0	0	0	0.59099	3	9044	9044;9054;9068		53.351	7.3995	1	1749900			74457	4084	51933	52018	81808;81809;81810	81808					-0.04862182562465023
SMPDFDLHL	9	Unmodified	_SMPDFDLHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.K3090Qfs*6|1|0.36|ENSG00000124942|chr11:62525149-62525150|-/G|frameshift_variant;AHNAK|p.K4256E|1|0.15|ENSG00000124942|chr11:62521651-62521651|T/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7494506835938	2	537.749867	1073.48518	-0.66661	-0.00035847	0.5922	0.00031846	-0.074411	-4.0015E-05	537.7500114595766	76.083	1.0186	75.914	75.591	76.61	-0.16854					57	24	3	0	0	0	0.59099	1	9023	9023		53.351	2.1588	1	1673600			74458	4084	51933	52018	81811	81811					-0.04862182562465023
SMPGRIING	9	Unmodified	_SMPGRIING_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.75537109375	2	472.752744	943.490935	0.91414	0.00043216	0.50242	0.00023752	1.4166	0.00066968	472.7530210484187	39.59	1.3676	39.59	39.219	40.587	0					103	38	5	0	0	0	0.62163	1	3427	3427		51.335	5.3835	1	14314000			74459	2444	51934	52019	81812	81812					0.016929607398765256
SMPGRIING	9	Unmodified	_SMPGRIING_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7552795410156	2	472.752744	943.490935	-0.53815	-0.00025441	2.0839	0.00098515	1.5457	0.00073074	472.7538156002825	39.589	1.3408	39.49	39.091	40.431	-0.098755					113	36	6	0	0	0	0.72875	1	3415	3415		44.117	1.6423	1	12900000			74460	2444	51934	52019	81813	81813					0.016929607398765256
SMPIDLDL	8	Unmodified	_SMPIDLDL_					0	0	0			REV__nc|ENSG00000153560|Q9NZI7-4|UBP1	REV__nc|ENSG00000153560|Q9NZI7-4|UBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2477722167969	2	452.228236	902.44192	0.68866	0.00031143	0.40951	0.00018519	1.0982	0.00049663	452.2290047388522	33.16	0.4693	33.217	32.916	33.386	0.056572					18	12	3	0	0	0	0.027866	1	2332	2332		30.504	0	1	362280	+		74461	24906	51935	52020	81814	81814					-0.013203723397282374
SMPSEMKNH	9	Unmodified	_SMPSEMKNH_					0	0	0			REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|45|1|anti-sense	REV__SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|45|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2886352539062	2	530.731151	1059.44775	-0.92821	-0.00049263	0.61621	0.00032704	-0.31199	-0.00016559	530.7312874710544	45.451	0.36633	45.451	45.214	45.58	0					17	10	2	0	0	0	0.024477	1	4438	4438		20.947	9.4359	1	167850	+		74462	37602	51936	52021	81815	81815					-0.0795959709971612
SMPTNYELYY	10	Unmodified	_SMPTNYELYY_					0	0	0		nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-2|OSBPL6	nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.7777099609375	2	640.778822	1279.54309	0.025178	1.6134E-05	-2.6161	-0.0016763	-2.5909	-0.0016602	640.7774598864622	51.87	1.9187	51.686	51.258	53.177	-0.18404					114	49	4	0	0	0	0.91678	1	5373	5373		52.937	8.5595	1	29672000			74463	1653	51937	52022	81816	81816					-0.08549965427664574
SMPWICVPR	9	Unmodified	_SMPWICVPR_					0	0	0		ENST00000459764.1_1_10:102747580-102749466:+|nuORF	ENST00000459764.1_1_10:102747580-102749466:+|nuORF	ENST00000459764.1_1_10:102747580-102749466:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.316650390625	2	544.772622	1087.53069	-0.2703	-0.00014725	-4.043	-0.0022025	-4.3133	-0.0023498	544.7706022693294	87.658	0.3638	87.623	87.405	87.769	-0.035355					15	8	2	0	0	0	0.024539	1	10980	10980		27.882	19.651	1	122240			74464	14635	51938	52023	81817	81817					-0.009572355810632871
SMPWICVPR	9	Unmodified	_SMPWICVPR_					0	0	0		ENST00000459764.1_1_10:102747580-102749466:+|nuORF	ENST00000459764.1_1_10:102747580-102749466:+|nuORF	ENST00000459764.1_1_10:102747580-102749466:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.31640625	2	544.772622	1087.53069	-0.51391	-0.00027997	-3.8494	-0.002097	-4.3633	-0.002377	544.770219071063	87.716	0.45043	87.579	87.373	87.823	-0.13734					15	10	2	0	0	0	0.024477	1	10651	10651		27.882	13.017	1	52276			74465	14635	51938	52023	81818	81818					-0.009572355810632871
SMRLANLLM	9	2 Oxidation (M)	_SM(Oxidation (M))RLANLLM(Oxidation (M))_		SM(1)RLANLLM(1)		SM(130)RLANLLM(130)	0	0	2		nc|ENSG00000140009|Q92731-4|ESR2;ENST00000555483.5_1_14:64699857-64724116:-|nuORF;nc|ENSG00000140009|Q92731-7|ESR2;nc|ENSG00000140009|Q92731-6|ESR2;nc|ENSG00000140009|Q92731-9|ESR2;nc|ENSG00000140009|Q92731-5|ESR2;nc|ENSG00000140009|Q92731-2|ESR2;ENSG00000140009|ENST00000341099|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.8255004882812	2	540.780644	1079.54674	-1.5825	-0.00085577	-3.9174	-0.0021184	-5.4999	-0.0029742	540.7787726803067	91.114	0.57648	90.965	90.691	91.268	-0.1487					46	13	6	0	0	0	0.016258	1	11170	11170		129.68	38.906	1	390000			74466	18331	51939	52024	81819	81819		568;569			0.010144258651962446
SMRLANLLM	9	2 Oxidation (M)	_SM(Oxidation (M))RLANLLM(Oxidation (M))_		SM(1)RLANLLM(1)		SM(99)RLANLLM(99)	0	0	2		nc|ENSG00000140009|Q92731-4|ESR2;ENST00000555483.5_1_14:64699857-64724116:-|nuORF;nc|ENSG00000140009|Q92731-7|ESR2;nc|ENSG00000140009|Q92731-6|ESR2;nc|ENSG00000140009|Q92731-9|ESR2;nc|ENSG00000140009|Q92731-5|ESR2;nc|ENSG00000140009|Q92731-2|ESR2;ENSG00000140009|ENST00000341099|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.826416015625	2	540.780644	1079.54674	-0.80766	-0.00043677	-4.1591	-0.0022492	-4.9668	-0.0026859	540.7783872415729	91.142	0.6992	91.019	90.714	91.413	-0.12341					44	16	4	0	0	0	0.022083	1	11178	11178		99.375	17.07	1	420670			74467	18331	51939	52024	81820	81820		568;569			0.010144258651962446
SMRLANLLM	9	2 Oxidation (M)	_SM(Oxidation (M))RLANLLM(Oxidation (M))_					0	0	2		nc|ENSG00000140009|Q92731-4|ESR2;ENST00000555483.5_1_14:64699857-64724116:-|nuORF;nc|ENSG00000140009|Q92731-7|ESR2;nc|ENSG00000140009|Q92731-6|ESR2;nc|ENSG00000140009|Q92731-9|ESR2;nc|ENSG00000140009|Q92731-5|ESR2;nc|ENSG00000140009|Q92731-2|ESR2;ENSG00000140009|ENST00000341099|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.780644	1079.54674	-1.5058	-0.00081432	-11.402	-0.0061659	-12.908	-0.0069802	540.774483717729	91.296	0.72849	91.296	91.174	91.902	0	0.035871	-0.0059065	NaN	129.68	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49821			74468	18331	51939	52024				568;569			0.010144258651962446
SMRLANLLM	9	2 Oxidation (M)	_SM(Oxidation (M))RLANLLM(Oxidation (M))_					0	0	2		nc|ENSG00000140009|Q92731-4|ESR2;ENST00000555483.5_1_14:64699857-64724116:-|nuORF;nc|ENSG00000140009|Q92731-7|ESR2;nc|ENSG00000140009|Q92731-6|ESR2;nc|ENSG00000140009|Q92731-9|ESR2;nc|ENSG00000140009|Q92731-5|ESR2;nc|ENSG00000140009|Q92731-2|ESR2;ENSG00000140009|ENST00000341099|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	nc|ENSG00000140009|Q92731-4|ESR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.780644	1079.54674	-0.65963	-0.00035672	-11.38	-0.0061542	-12.04	-0.0065109	541.2754755722359	91.643	0.12939	91.52	91.456	91.586	-0.12341	0.2596	-0.005883	NaN	129.68	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19006			74469	18331	51939	52024				568;569			0.010144258651962446
SMRPPLLI	8	Unmodified	_SMRPPLLI_					0	0	0		ENST00000446571.7_2_17:42268247-42268439:+|nuORF	ENST00000446571.7_2_17:42268247-42268439:+|nuORF	ENST00000446571.7_2_17:42268247-42268439:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7762451171875	2	463.778231	925.541908	0.087529	4.0594E-05	-3.5206	-0.0016328	-3.433	-0.0015922	463.7763512355861	73.483	2.1596	73.483	73.034	75.194	0					92	53	3	0	0	0	0.81662	1	8989	8989		57.811	0	1	3968600			74470	14457	51940	52025	81821	81821					0.07615909784738051
SMRPPLLI	8	Unmodified	_SMRPPLLI_					0	0	0		ENST00000446571.7_2_17:42268247-42268439:+|nuORF	ENST00000446571.7_2_17:42268247-42268439:+|nuORF	ENST00000446571.7_2_17:42268247-42268439:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.77728271484375	2	463.778231	925.541908	0.23993	0.00011128	-3.8135	-0.0017686	-3.5736	-0.0016573	463.77628912674555	73.528	1.7868	73.538	73.068	74.854	0.0096512					72	43	2	0	0	0	0.845	1	8897	8897		55.504	0	1	3911000			74471	14457	51940	52025	81822	81822					0.07615909784738051
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.73406982421875	2	459.733686	917.452819	-0.0016949	-7.7922E-07	0.27777	0.0001277	0.27607	0.00012692	459.73368231418186	69.076	1.0333	69.076	68.717	69.75	0					51	26	3	0	0	0	0.17455	2	8316	8316;8330		94.006	17.232	1	2018300			74472	4632	51941	52026	81823;81824	81823					-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.734130859375	2	459.733686	917.452819	0.55334	0.00025439	-0.1628	-7.4846E-05	0.39053	0.00017954	459.7334326133843	69.412	1.0425	69.119	68.753	69.795	-0.29291					55	26	3	0	0	0	0.4752	1	8330	8330		60.972	10.947	1	1742400			74473	4632	51941	52026	81825	81825					-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.7342224121094	2	459.733686	917.452819	0.089624	4.1203E-05	0.11446	5.262E-05	0.20408	9.3824E-05	459.7336393955993	69.126	0.91682	69.141	68.795	69.712	0.015121					64	23	4	0	0	0	0.11848	1	8235	8235		106.42	32.44	1	2465900			74474	4632	51941	52026	81826	81826					-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	459.733686	917.452819	-0.6185	-0.00028434	0.67555	0.00031058	0.057058	2.6231E-05	459.73388360394955	69.488	0.79257	69.221	68.87	69.662	-0.26724	0.087716	0.0004842	NaN	106.42	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970620			74475	4632	51941	52026							-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	459.733686	917.452819	0.11855	5.4503E-05	-0.090083	-4.1414E-05	0.02847	1.3089E-05	459.7335343182729	69.384	1.0704	69.134	68.579	69.649	-0.25063	0.00034031	-0.00021978	NaN	106.42	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303200			74476	4632	51941	52026							-0.00920969965443419
SMSADVPLV	9	Unmodified	_SMSADVPLV_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	459.733686	917.452819	-0.12045	-5.5375E-05	0.23603	0.00010851	0.11558	5.3138E-05	459.7336386683144	69.332	0.99558	69.109	68.727	69.722	-0.22246	-0.023858	8.0072E-05	NaN	106.42	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1543700			74477	4632	51941	52026							-0.00920969965443419
SMSHHSAGW	9	Unmodified	_SMSHHSAGW_					0	0	0			REV__nc|ENSG00000055917|Q8TB72-2|PUM2	REV__nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2079162597656	2	500.208701	998.402849	-0.436	-0.00021809	-1.3088	-0.00065468	-1.7448	-0.00087276	500.2079506695023	43.599	4.2786	43.488	42.246	46.524	-0.11145					274	116	3	0	0	0	0.80658	1	3896	3896		38.806	3.1879	1	7873800	+		74478	20208	51942	52027	81827	81827					-0.09641659850740325
SMSNKMENV	9	Unmodified	_SMSNKMENV_					0	0	0			REV__ENSG00000074695|ENST00000251047|LMAN1	REV__ENSG00000074695|ENST00000251047|LMAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2557983398438	2	520.230984	1038.44742	-0.11373	-5.9166E-05	0.82508	0.00042923	0.71135	0.00037007	520.2313171296796	50.392	0.36968	50.286	50.088	50.457	-0.10558					15	9	2	0	0	0	0.024487	1	5105	5105		31.955	0	1	234470	+		74479	20530	51943	52028	81828	81828					-0.0702701681959752
SMTGPQAR	8	Unmodified	_SMTGPQAR_					0	0	0			REV__ENSG00000099994|ENST00000358321|SUSD2	REV__ENSG00000099994|ENST00000358321|SUSD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2582702636719	2	424.20817	846.401786	-0.52609	-0.00022317	-3.24	-0.0013744	-3.766	-0.0015976	424.2065745363082	27.063	0.57879	27.05	26.662	27.241	-0.012983					21	14	2	0	0	0	0.027866	1	1450	1450		29.15	4.9468	1	153110	+		74480	21029	51944	52029	81829	81829					-0.02755874219656107
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.76800537109375	2	507.76806	1013.52157	-0.63032	-0.00032006	0.3577	0.00018163	-0.27262	-0.00013843	507.76808491514674	60.584	2.4414	60.584	59.675	62.117	0					199	65	4	0	0	0	0.20967	4	7042	7016;7030;7042;7053		87.754	10.949	1	6914900			74481	5683	51945	52030	81830;81831;81832;81833	81832					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.7674560546875	2	507.76806	1013.52157	-0.48527	-0.00024641	0.20541	0.0001043	-0.27986	-0.00014211	507.7679860837699	60.878	2.5298	60.664	59.603	62.133	-0.21339					184	67	4	0	0	0	0.072054	4	7030	7018;7030;7043;7057		120.62	35.262	1	7156300			74482	5683	51945	52030	81834;81835;81836;81837	81835					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7674560546875	2	507.76806	1013.52157	-1.1368	-0.00057723	0.92237	0.00046835	-0.21442	-0.00010888	507.76832191894147	60.587	2.2409	60.666	59.863	62.104	0.078888					177	59	4	0	0	0	0.082191	4	6933	6921;6933;6946;6958		116.9	36.964	1	6349000			74483	5683	51945	52030	81838;81839;81840;81841	81839					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.76806640625	2	507.76806	1013.52157	-0.167	-8.4799E-05	0.18664	9.4772E-05	0.01964	9.9727E-06	507.7680010225494	61.149	1.3302	60.943	60.011	61.341	-0.20599					71	32	4	0	0	0	0.033448	2	6825	6825;6835		138.83	52.883	1	1568100			74484	5683	51945	52030	81842;81843	81842					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7678527832031	2	507.76806	1013.52157	-1.049	-0.00053263	1.1559	0.00058694	0.10695	5.4305E-05	507.7684047693885	61.028	0.88706	60.852	60.443	61.33	-0.1761					59	21	4	0	0	0	0.012965	2	6823	6812;6823		172.03	57.445	1	1598800			74485	5683	51945	52030	81844;81845	81845					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7680969238281	2	507.76806	1013.52157	-0.85763	-0.00043548	0.72295	0.00036709	-0.13468	-6.8388E-05	507.7682670505932	61.201	1.3744	60.948	60.053	61.427	-0.25373					70	33	4	0	0	0	0.015925	2	6830	6819;6830		157.21	28.43	1	1660000			74486	5683	51945	52030	81846;81847	81847					0.01534694334247888
SMTPPTLNI	9	Unmodified	_SMTPPTLNI_					0	0	0		nc|ENSG00000037280|P35916-3|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;FLT4|p.Q423Rfs*70|1|0.3|ENSG00000037280|chr5:180626023-180626023|G/-|frameshift_variant	nc|ENSG00000037280|P35916-3|FLT4	nc|ENSG00000037280|P35916-3|FLT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2539367675781	2	487.254785	972.495018	-0.5555	-0.00027067	0.90716	0.00044202	0.35166	0.00017135	487.25509362581715	64.616	0.88698	64.616	64.168	65.055	0					61	23	4	0	0	0	0.35646	1	7610	7610		68.787	5.4806	1	2219600			74487	1045	51946	52031	81848	81848					0.007670054429127049
SMVNPVIYA	9	Unmodified	_SMVNPVIYA_					0	0	0		ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	ENSG00000188822|ENST00000374472|CNR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.77410888671875	2	497.257328	992.500103	0.4415	0.00021954	3.2467	0.0016145	3.6882	0.001834	497.258848470304	72.719	0.49832	72.728	72.529	73.027	0.0096512					19	11	2	0	0	0	0.024405	1	8824	8824		44.117	29.252	1	158000			74488	9757	51947	52032	81849	81849					0.00355309305530227
SMVRLFIDD	9	Unmodified	_SMVRLFIDD_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.2952270507812	2	548.278792	1094.54303	1.4198	0.00077843	-2.3521	-0.0012896	-0.93232	-0.00051117	548.2781008793382	19.798	0.2827	19.864	19.735	20.018	0.066195					8	5	2	0	0	0	0.024405	1	406	406		35.618	0	1	90193	+		74489	25831	51948	52033	81850	81850					-0.00045920637057861313
SMYDKVLML	9	2 Oxidation (M)	_SM(Oxidation (M))YDKVLM(Oxidation (M))L_		SM(1)YDKVLM(1)L		SM(120)YDKVLM(120)L	0	0	2		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.2747192382812	2	566.27486	1130.53517	-0.85888	-0.00048636	0.48642	0.00027545	-0.37246	-0.00021092	566.2750339044909	60.346	0.74116	60.346	59.988	60.73	0					50	19	3	0	0	0	0.086035	1	6935	6935		115.49	41.239	1	3497500			74490	6018	51949	52034	81851	81851		251;252			-0.02487815948802563
SMYDKVLML	9	2 Oxidation (M)	_SM(Oxidation (M))YDKVLM(Oxidation (M))L_		SM(1)YDKVLM(1)L		SM(85)YDKVLM(85)L	0	0	2		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.2750854492188	2	566.27486	1130.53517	-0.77741	-0.00044023	0.35826	0.00020287	-0.41915	-0.00023736	566.2749546479082	60.579	0.79424	60.365	60	60.795	-0.2134					58	20	5	0	0	0	0.22902	1	6938	6938		85.161	13.865	1	3367400			74491	6018	51949	52034	81852	81852		251;252			-0.02487815948802563
SMYDKVLML	9	2 Oxidation (M)	_SM(Oxidation (M))YDKVLM(Oxidation (M))L_		SM(1)YDKVLM(1)L		SM(96)YDKVLM(96)L	0	0	2		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.2754516601562	2	566.27486	1130.53517	-2.5611	-0.0014503	1.9977	0.0011312	-0.56346	-0.00031907	566.2760243778263	60.288	0.86503	60.366	59.974	60.839	0.078884					64	22	5	0	0	0	0.16638	2	6839	6839;6852		95.815	21.56	1	3048200			74492	6018	51949	52034	81853;81854	81853		251;252			-0.02487815948802563
SMYDKVLML	9	2 Oxidation (M)	_SM(Oxidation (M))YDKVLM(Oxidation (M))L_					0	0	2		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	566.27486	1130.53517	-0.31941	-0.00018087	-0.64967	-0.00036789	-0.96908	-0.00054877	566.2744444703842	60.634	0.32524	60.428	60.295	60.62	-0.20599	0.053214	-0.0017368	NaN	115.49	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114020			74493	6018	51949	52034				251;252			-0.02487815948802563
SMYDKVLML	9	2 Oxidation (M)	_SM(Oxidation (M))YDKVLM(Oxidation (M))L_					0	0	2		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	566.27486	1130.53517	-0.79068	-0.00044774	-1.5946	-0.00090297	-2.3853	-0.0013507	566.273930906368	60.452	0.59854	60.276	60.076	60.674	-0.1761	-0.098567	-0.002807	NaN	115.49	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71856			74494	6018	51949	52034				251;252			-0.02487815948802563
SMYDKVLML	9	2 Oxidation (M)	_SM(Oxidation (M))YDKVLM(Oxidation (M))L_					0	0	2		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	566.27486	1130.53517	-0.74103	-0.00041963	-0.62752	-0.00035535	-1.3686	-0.00077498	566.2744888377247	60.721	0.4446	60.468	60.253	60.697	-0.25373	0.092611	-0.0017117	NaN	115.49	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96430			74495	6018	51949	52034				251;252			-0.02487815948802563
SMYDKVLML	9	Oxidation (M)	_SMYDKVLM(Oxidation (M))L_		SMYDKVLM(1)L		SM(-120)YDKVLM(120)L	0	0	1		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.27734375	2	558.277403	1114.54025	-0.085428	-4.7692E-05	-0.38059	-0.00021247	-0.46601	-0.00026016	558.2770795620299	68.374	0.8736	68.374	67.987	68.861	0					64	22	5	0	0	0	0.041068	4	8208	8185;8196;8208;8222		132.76	45.157	2	4673700			74496	6018	51949	52035	81855;81856;81857;81858	81857		251;252			-0.012435120862164695
SMYDKVLML	9	Oxidation (M)	_SMYDKVLM(Oxidation (M))L_		SMYDKVLM(1)L		SM(-100)YDKVLM(100)L	0	0	1		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.2775268554688	2	558.277403	1114.54025	-0.086405	-4.8238E-05	-0.4523	-0.00025251	-0.5387	-0.00030075	558.2771250678269	68.793	0.84142	68.5	68.092	68.933	-0.29267					75	21	5	0	0	0	0.1158	2	8211	8211;8221		107.01	24.606	2	5022600			74497	6018	51949	52035	81859;81860	81859		251;252			-0.012435120862164695
SMYDKVLML	9	Oxidation (M)	_SMYDKVLM(Oxidation (M))L_		SMYDKVLM(1)L		SM(-84)YDKVLM(84)L	0	0	1		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.2771606445312	2	558.277403	1114.54025	0.39042	0.00021796	-0.95397	-0.00053258	-0.56355	-0.00031462	558.2768570964456	68.466	1.1218	68.484	67.819	68.941	0.018913					89	29	5	0	0	0	0.22902	2	8143	8131;8143		85.161	21.779	2	5058000			74498	6018	51949	52035	81861;81862	81862		251;252			-0.012435120862164695
SMYDKVLML	9	Oxidation (M)	_SMYDKVLM(Oxidation (M))L_					0	0	1		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.277403	1114.54025	-0.95578	-0.00053359	0.72311	0.00040369	-0.23268	-0.0001299	558.2774120627332	68.715	0.48454	68.453	68.181	68.666	-0.26165	0.0091892	0.001408	NaN	132.76	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210430			74499	6018	51949	52035				251;252			-0.012435120862164695
SMYDKVLML	9	Oxidation (M)	_SMYDKVLM(Oxidation (M))L_					0	0	1		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.277403	1114.54025	0.32985	0.00018415	-1.0607	-0.00059219	-0.73088	-0.00040804	558.2765778908298	68.68	0.51908	68.437	68.187	68.707	-0.24277	-0.0065107	-0.00058377	NaN	132.76	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336520			74500	6018	51949	52035				251;252			-0.012435120862164695
SMYDKVLML	9	Oxidation (M)	_SMYDKVLM(Oxidation (M))L_					0	0	1		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.277403	1114.54025	0.081217	4.5342E-05	-0.63602	-0.00035508	-0.5548	-0.00030973	558.2767758121024	68.644	0.64861	68.414	68.195	68.844	-0.23048	-0.030233	-0.00010955	NaN	132.76	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239570			74501	6018	51949	52035				251;252			-0.012435120862164695
SNAFAVLDMP	10	Unmodified	_SNAFAVLDMP_					0	0	0			REV__nc|ENSG00000110881|P78348-3|ASIC1	REV__nc|ENSG00000110881|P78348-3|ASIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7987670898438	2	532.757692	1063.50083	-0.2328	-0.00012403	-2.004	-0.0010676	-2.2368	-0.0011917	532.7566492349112	99.291	0.79546	99.291	98.867	99.663	0					20	17	2	0	0	0	0.03519	1	12682	12682		42.864	0	1	59581	+		74502	36564	51950	52036	81863	81863					-0.028378960454119806
SNALRPLTV	9	Unmodified	_SNALRPLTV_					0	0	0			REV__ENST00000429764.5_1_2:85582731-85584092:+|nuORF	REV__ENST00000429764.5_1_2:85582731-85584092:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.271728515625	2	485.787641	969.56073	-0.20811	-0.0001011	-0.50234	-0.00024403	-0.71044	-0.00034513	485.7872440469759	33.313	0.35101	33.113	32.896	33.247	-0.20019					11	8	2	0	0	0	0.024397	1	2340	2340		47.657	3.5405	1	67441	+		74503	32343	51951	52037	81864	81864					0.0747316268011673
SNAPDYFSL	9	Unmodified	_SNAPDYFSL_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3080749511719	2	507.232364	1012.45018	-0.14985	-7.601E-05	-2.9209	-0.0014816	-3.0707	-0.0015576	507.2293104723157	43.393	0.50097	43.28	42.854	43.355	-0.11253					19	13	2	0	0	0	0.024261	1	3952	3952		45.972	10.82	1	151740	+		74504	20656	51952	52038	81865	81865					-0.05555102098765019
SNAWGPAK	8	Unmodified	_SNAWGPAK_					0	0	0			REV__CD163|p.Q805Afs*25|1|0.22|ENSG00000177575|chr12:7486544-7486545|-/C|frameshift_variant	REV__CD163|p.Q805Afs*25|1|0.22|ENSG00000177575|chr12:7486544-7486545|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	415.7095642089844	2	415.711402	829.408252	-0.76262	-0.00031703	-3.9965	-0.0016614	-4.7591	-0.0019784	415.7097228923088	26.126	2.4926	25.963	25.457	27.95	-0.16331					138	63	4	0	0	0	0.95679	1	1330	1330		44.117	8.4985	1	18466000	+		74505	19270	51953	52039	81866	81866					-0.013276129966243388
SNCLHGKII	9	Unmodified	_SNCLHGKII_					0	0	0		ENST00000368608.3_1_6:116598063-116598108:-|nuORF	ENST00000368608.3_1_6:116598063-116598108:-|nuORF	ENST00000368608.3_1_6:116598063-116598108:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.76654052734375	2	492.768394	983.522236	-0.40058	-0.00019739	-3.0899	-0.0015226	-3.4905	-0.00172	492.76688273875067	77.816	2.3666	77.832	77.147	79.514	0.015907					155	56	4	0	0	0	0.67687	1	9521	9521		47.657	5.2612	1	4529700			74506	12899	51954	52040	81867	81867					0.029815337739705683
SNDLALVPI	9	Unmodified	_SNDLALVPI_					0	0	0		nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6	nc|ENSG00000173826|Q9H252-2|KCNH6	nc|ENSG00000173826|Q9H252-2|KCNH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.2687683105469	2	471.26875	940.522947	-0.25241	-0.00011895	1.7292	0.00081491	1.4768	0.00069596	471.2694463764653	40.061	1.3026	39.911	39.668	40.971	-0.1497					52	34	3	0	0	0	0.59099	1	3464	3464		53.351	3.3269	1	2386600			74507	8415	51955	52041	81868	81868					0.05030651694653443
SNEDEPSEPSE	11	Unmodified	_SNEDEPSEPSE_					0	0	0			REV__nc|ENSG00000152592|Q13316-2|DMP1	REV__nc|ENSG00000152592|Q13316-2|DMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	609.7572021484375	2	610.233487	1218.45242	-0.27466	-0.0001676	-3.791	-0.0023134	-4.0656	-0.002481	610.2309473226766	53.554	0.50706	53.295	53.039	53.546	-0.25838					26	13	3	0	0	0	0.024741	1	5578	5578		30.318	2.2362	1	362310	+		74508	24855	51956	52042	81869	81869					-0.14806762942271234
SNEGVSQVSL	10	Unmodified	_SNEGVSQVSL_					0	0	0		ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	ENSG00000075223|ENST00000265361|SEMA3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.77197265625	2	510.253828	1018.4931	0.5138	0.00026217	3.0148	0.0015383	3.5286	0.0018005	510.25514229060116	84.467	0.67906	84.264	83.951	84.63	-0.20329					22	15	2	0	0	0	0.03519	1	10222	10222		32.751	11.804	1	212900			74509	1547	51957	52043	81870	81870					-0.015403320413270194
SNEKHSNESH	10	Unmodified	_SNEKHSNESH_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	584.78515625	2	584.752515	1167.49048	-1.44	-0.00084207	-0.53026	-0.00031007	-1.9703	-0.0011521	584.75182508508	52.357	0.3946	52.357	52.16	52.554	0					15	9	2	0	0	0	0.03519	1	5619	5619		30.318	0	1	67779	+		74510	19892	51958	52044	81871	81871					-0.08656787446284397
SNEKLKQT	8	Unmodified	_SNEKLKQT_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.27166748046875	2	474.261456	946.50836	-0.38767	-0.00018386	-1.6137	-0.0007653	-2.0013	-0.00094915	474.26075033228483	47.735	0.59816	47.794	47.585	48.183	0.059097					25	17	2	0	0	0	0.027866	1	4823	4823		31.53	9.8275	1	467210			74511	1746	51959	52045	81872	81872					0.03296579546531575
SNELSPLCQE	10	Carbamidomethyl (C)	_SNELSPLC(Carbamidomethyl (C))QE_	SNELSPLC(1)QE		SNELSPLC(110)QE		0	1	0			REV__nc|ENSG00000107669|O95260-2|ATE1	REV__nc|ENSG00000107669|O95260-2|ATE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.2390747070312	2	588.763703	1175.51285	-0.91517	-0.00053882	-3.7435	-0.002204	-4.6587	-0.0027429	588.7608021107437	53.868	0.45008	53.623	53.383	53.833	-0.2453					22	11	3	0	0	0	0.03519	1	5637	5637		114.89	29.734	1	403380	+		74512	36552	51960	52046	81873	81873	473				-0.06788324092894982
SNESEGSLL	9	Unmodified	_SNESEGSLL_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2689514160156	2	468.219454	934.424355	-0.77423	-0.00036251	1.898	0.00088868	1.1238	0.00052617	468.22019148189287	60.683	0.5569	60.683	60.401	60.958	0					20	14	2	0	0	0	0.022756	1	6964	6964		32.812	6.1195	1	140630	+		74513	28481	51961	52047	81874	81874					-0.04547996341034377
SNETEPVRA	9	Unmodified	_SNETEPVRA_					0	0	0		nc|ENSG00000148541|Q8NE31-5|FAM13C;nc|ENSG00000148541|Q8NE31-4|FAM13C;ENSG00000148541|ENST00000618804|FAM13C;nc|ENSG00000148541|Q8NE31-3|FAM13C	nc|ENSG00000148541|Q8NE31-5|FAM13C	nc|ENSG00000148541|Q8NE31-5|FAM13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.26416015625	2	501.74617	1001.47779	-0.19304	-9.6858E-05	1.6838	0.00084485	1.4908	0.00074799	502.2476254146965	75.87	0.18704	75.695	75.584	75.771	-0.17548					6	4	2	0	0	0	0.024427	1	8978	8978		26.693	10.22	1	67251			74514	6039	51962	52048	81875	81875					-0.02289198838525408
SNFKVRFFVL	10	Unmodified	_SNFKVRFFVL_					0	0	0		ENSG00000113263|ENST00000422843|ITK;ITK|p.P23L|1|0.33|ENSG00000113263|chr5:157181045-157181045|C/T|missense_variant;ENST00000522616.1_1_5:156607865-156622098:+|nuORF;ENST00000520555.5_1_5:156607865-156638384:+|nuORF;ENST00000519402.5_1_5:156607865-156667213:+|nuORF	ENSG00000113263|ENST00000422843|ITK	ENSG00000113263|ENST00000422843|ITK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	419.5776672363281	3	419.576519	1255.70773	-0.59026	-0.00024766	2.9218	0.0012259	2.3316	0.00097826	419.5777836118063	21.369	1.2001	21.369	20.998	22.198	0					71	24	5	0	0	0	1.1195	1	643	643		20.837	0.80668	1	853400			74515	3275	51963	52049	81876	81876					0.09010259565093293
SNFPPPHLED	10	Unmodified	_SNFPPPHLED_					0	0	0		ENSG00000121570|ENST00000335658|DPPA4;ENST00000475135.1_1_3:109046837-109047984:-|nuORF	ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.7879638671875	2	576.769645	1151.52474	-0.76332	-0.00044026	3.1082	0.0017927	2.3449	0.0013525	576.7711122448047	69.248	0.4137	69.263	68.974	69.388	0.015129					16	10	2	0	0	0	0.03519	1	8215	8215		39.253	0	1	107260			74516	3873	51964	52050	81877	81877					-0.04496339287379669
SNFPPPHLED	10	Unmodified	_SNFPPPHLED_					0	0	0		ENSG00000121570|ENST00000335658|DPPA4;ENST00000475135.1_1_3:109046837-109047984:-|nuORF	ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	576.769645	1151.52474	-0.96389	-0.00055594	4.5515	0.0026252	3.5876	0.0020692	576.7725048514269	69.536	0.53207	69.536	69.383	69.915	0	0.054912	0.00096858	NaN	44.377	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115430			74517	3873	51964	52050							-0.04496339287379669
SNFPPPHLED	10	Unmodified	_SNFPPPHLED_					0	0	0		ENSG00000121570|ENST00000335658|DPPA4;ENST00000475135.1_1_3:109046837-109047984:-|nuORF	ENSG00000121570|ENST00000335658|DPPA4	ENSG00000121570|ENST00000335658|DPPA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	576.769645	1151.52474	0.5431	0.00031325	3.1387	0.0018103	3.6818	0.0021236	576.7714055322351	69.937	0.49302	69.644	69.427	69.92	-0.29292	0.16315	-0.00066113	NaN	44.377	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131980			74518	3873	51964	52050							-0.04496339287379669
SNFQVVIITI	10	Unmodified	_SNFQVVIITI_					0	0	0			REV__ENSG00000164951|ENST00000297598|PDP1	REV__ENSG00000164951|ENST00000297598|PDP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.328857421875	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0344	1	11686	11686		41.427	1.3684	1	14057000	+		74519	25825	51965	52051	81878	81878					0.0881915819995811
SNGELPHCTES	11	Unmodified	_SNGELPHCTES_					0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.2908935546875	2	587.245677	1172.4768	-0.19923	-0.000117	1.3651	0.00080165	1.1659	0.00068465	587.246137739397	53.065	0.70437	52.807	52.482	53.186	-0.25838					29	17	3	0	0	0	0.024745	1	5521	5521		33.922	0	1	334690	+		74520	36451	51966	52052	81879	81879					-0.10253781269739193
SNGELPHCTES	11	Unmodified	_SNGELPHCTES_					0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	587.245677	1172.4768	-0.42291	-0.00024835	1.8834	0.001106	1.4605	0.00085769	587.2463094726393	52.777	0.67412	52.65	52.353	53.027	-0.12706	-0.055719	0.00019758	NaN	20.837	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285010	+		74521	36451	51966	52052							-0.10253781269739193
SNGFFLAPE	9	Unmodified	_SNGFFLAPE_					0	0	0		ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENST00000426186.1_3_2:87098444-87121919:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2766418457031	2	491.23745	980.460347	-0.92876	-0.00045624	3.5367	0.0017374	2.608	0.0012811	491.2388538635322	65.036	0.53822	65.036	64.654	65.192	0					17	14	2	0	0	0	0.024457	1	7626	7626		15.642	0	1	142020			74522	14081	51967	52053	81880	81880					-0.030664943735246197
SNGFLRIY	8	Unmodified	_SNGFLRIY_					0	0	0			REV__ENSG00000143013|ENST00000370544|LMO4	REV__ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.30816650390625	2	485.261259	968.507966	-0.10292	-4.9945E-05	-0.024054	-1.1673E-05	-0.12698	-6.1617E-05	485.26105085644974	63.909	0.93632	63.681	63.366	64.302	-0.22773					56	23	3	0	0	0	0.027866	1	7240	7240		64.207	2.0999	1	1031900	+		74523	24191	51968	52054	81881	81881					0.022452046173043527
SNGFLRIY	8	Unmodified	_SNGFLRIY_					0	0	0			REV__ENSG00000143013|ENST00000370544|LMO4	REV__ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.30841064453125	2	485.261259	968.507966	0.28657	0.00013906	-0.54525	-0.00026459	-0.25868	-0.00012553	485.2608487325024	63.987	0.88328	63.729	63.46	64.343	-0.25824					43	22	3	0	0	0	0.027866	1	7243	7243		64.207	2.0999	1	1002700	+		74524	24191	51968	52054	81882	81882					0.022452046173043527
SNGGHFLR	8	Unmodified	_SNGGHFLR_					0	0	0		ENSG00000113578|ENST00000337706|FGF1;nc|ENSG00000113578|P05230-2|FGF1	ENSG00000113578|ENST00000337706|FGF1	ENSG00000113578|ENST00000337706|FGF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.261474609375	2	444.227751	886.440949	-1.0231	-0.00045448	1.0781	0.0004789	0.054984	2.4425E-05	444.22805438101483	37.761	0.49158	37.542	37.271	37.763	-0.2195					27	12	3	0	0	0	0.027866	1	3064	3064		38.806	8.3025	1	399280			74525	3305	51969	52055	81883	81883					-0.006814058737631967
SNGKAFIQL	9	Unmodified	_SNGKAFIQL_					0	0	0			REV__nc|ENSG00000174611|Q8NBH2-3|KY	REV__nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.29315185546875	2	489.274367	976.53418	-0.363	-0.00017761	0.89899	0.00043985	0.53598	0.00026224	489.274710711853	67.231	0.76444	66.943	66.665	67.429	-0.28834					24	18	2	0	0	0	0.024313	1	7967	7967		69.628	6.3214	1	184120	+		74526	26882	51970	52056	81884	81884					0.04497473788796924
SNGNLNFQREG	11	Unmodified	_SNGNLNFQREG_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.2273864746094	3	412.530297	1234.56906	-0.17272	-7.1251E-05	0.75409	0.00031108	0.58137	0.00023983	412.53058538238554	36.754	0.48298	36.538	36.326	36.809	-0.21661					20	11	2	0	0	0	0.024747	1	2922	2922		33.039	0	1	266550	+		74527	21792	51971	52057	81885	81885					-0.03883935141220718
SNGNLQLAI	9	Unmodified	_SNGNLQLAI_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2872314453125	2	465.256174	928.497795	-0.43747	-0.00020354	3.2559	0.0015148	2.8184	0.0013113	465.2556594833482	75.929	0.19232	75.657	75.582	75.775	-0.27266					11	4	3	0	0	0	0.024447	1	8992	8992		25.574	4.6271	1	56089			74528	4772	51972	52058	81886	81886					0.030685968920693085
SNGNVPSNNL	10	Unmodified	_SNGNVPSNNL_					0	0	0			REV__ENSG00000054598|ENST00000645831|FOXC1	REV__ENSG00000054598|ENST00000645831|FOXC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2928161621094	2	508.243795	1014.47304	-0.029849	-1.5171E-05	-3.1268	-0.0015892	-3.1566	-0.0016043	508.2419364549799	50.478	0.74731	50.198	49.766	50.513	-0.27977					48	19	4	0	0	0	0.03519	1	5161	5161		38.754	19.65	1	1920200	+		74529	20190	51973	52059	81887	81887					-0.0336208298128895
SNGRPGLL	8	Unmodified	_SNGRPGLL_					0	0	0			REV__KHDRBS2|p.V77E|1|0.31|ENSG00000112232|chr6:62047984-62047984|A/T|missense_variant	REV__KHDRBS2|p.V77E|1|0.31|ENSG00000112232|chr6:62047984-62047984|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.547607421875	2	407.232502	812.450451	0.069581	2.8336E-05	3.7649	0.0015332	3.8344	0.0015615	407.2325088982491	40.073	0.34146	39.961	39.792	40.134	-0.11223					17	8	3	0	0	0	0.027866	1	3497	3497		17.365	0	1	134200	+		74530	21980	51974	52060	81888	81888					0.036723624117598774
SNGVLGLSH	9	Unmodified	_SNGVLGLSH_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78790283203125	2	442.235242	882.45593	-0.12851	-5.6832E-05	-0.23881	-0.00010561	-0.36732	-0.00016244	442.2342662659163	41.469	0.2766	41.239	41.157	41.434	-0.2303					9	6	2	0	0	0	0.024457	1	3635	3635		21.96	0	1	47266	+		74531	21973	51975	52061	81889	81889					0.01000041203553792
SNHSRRLP	8	Unmodified	_SNHSRRLP_					0	0	0		ENST00000432511.1_1_1:203273721-203274369:-|nuORF	ENST00000432511.1_1_1:203273721-203274369:-|nuORF	ENST00000432511.1_1_1:203273721-203274369:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7615661621094	2	483.765032	965.515511	-0.30103	-0.00014563	2.3663	0.0011448	2.0653	0.00099912	483.76588423881543	37.136	0.3036	37.168	37.074	37.377	0.032269					11	7	2	0	0	0	0.027866	1	2960	2960		33.516	21.309	1	352890			74532	14206	51976	52062	81890	81890					0.03137356937622826
SNHSTSPQL	9	Unmodified	_SNHSTSPQL_					0	0	0		ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-5|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1	ENSG00000185499|ENST00000620103|MUC1	ENSG00000185499|ENST00000620103|MUC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.7332763671875	2	485.733063	969.451573	-0.0033388	-1.6217E-06	-3.7201	-0.001807	-3.7235	-0.0018086	485.7310522037201	72.799	1.0155	72.534	72.042	73.058	-0.26479					55	23	4	0	0	0	0.37611	1	8545	8545		67.494	4.1874	1	1340000			74533	9445	51977	52063	81891	81891					-0.034374680099972466
SNHTLQKLI	9	Unmodified	_SNHTLQKLI_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.3048095703125	2	527.306198	1052.59784	0.8738	0.00046076	-3.1218	-0.0016461	-2.248	-0.0011854	527.304563058713	97.996	1.4903	97.994	97.367	98.857	-0.0020752					65	34	3	0	0	0	0.96906	1	12456	12456		26.693	0	1	667590	+		74534	26425	51978	52064	81892	81892					0.07364834225904815
SNIAKIIIG	9	Unmodified	_SNIAKIIIG_					0	0	0		ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR	ENSG00000171105|ENST00000302850|INSR	ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.76129150390625	2	464.794935	927.575317	-0.52625	-0.0002446	-0.17275	-8.0295E-05	-0.69901	-0.00032489	464.7947613054729	44.933	0.62777	44.68	44.391	45.019	-0.25252					35	15	3	0	0	0	0.024466	1	4263	4263		39.253	0	1	1241200			74535	8111	51979	52065	81893	81893					0.10863234828298118
SNIIRHYKCHK	11	Carbamidomethyl (C)	_SNIIRHYKC(Carbamidomethyl (C))HK_	SNIIRHYKC(1)HK		SNIIRHYKC(51)HK		0	1	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.9280090332031	3	485.926105	1454.75649	-0.7161	-0.00034797	4.2638	0.0020719	3.5477	0.0017239	485.92826694188284	45.134	1.4038	45.034	44.554	45.958	-0.099449					109	38	4	0	0	0	0.91387	1	4240	4240		50.791	17.752	1	13334000			74536	9775	51980	52066	81894	81894	132				0.047298048625179945
SNILLELIS	9	Unmodified	_SNILLELIS_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3076171875	2	501.297507	1000.58046	-0.12409	-6.2208E-05	-0.064838	-3.2503E-05	-0.18893	-9.4712E-05	501.29730856250745	73.383	0.73846	73.112	72.76	73.499	-0.27126					34	18	3	0	0	0	0.024506	1	8902	8902		23.042	7.4007	1	180080	+		74537	24776	51981	52067	81895	81895					0.08019493900224006
SNILLELIS	9	Unmodified	_SNILLELIS_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.297507	1000.58046	-0.21158	-0.00010607	-0.52761	-0.00026449	-0.73919	-0.00037055	501.2968889306453	73.175	0.54441	72.898	72.669	73.214	-0.2769	-0.064448	-0.00038627	NaN	38.806	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352200	+		74538	24776	51981	52067							0.08019493900224006
SNILLELIS	9	Unmodified	_SNILLELIS_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.297507	1000.58046	-0.38324	-0.00019212	-0.43425	-0.00021769	-0.81749	-0.00040981	501.29709081124486	73.263	0.4178	72.998	72.681	73.099	-0.26479	0.035878	-0.00029267	NaN	38.806	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566030	+		74539	24776	51981	52067							0.08019493900224006
SNILLELIS	9	Unmodified	_SNILLELIS_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.297507	1000.58046	-0.73594	-0.00036893	-1.3435	-0.00067349	-2.0794	-0.0010424	501.29637593031333	72.943	0.58451	72.745	72.454	73.039	-0.19811	-0.21733	-0.0012043	NaN	38.806	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486840	+		74540	24776	51981	52067							0.08019493900224006
SNILLNCKV	9	Unmodified	_SNILLNCKV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.26416015625	2	502.283877	1002.5532	-0.37629	-0.000189	-1.6335	-0.00082049	-2.0098	-0.0010095	502.28296813355433	76.413	0.90118	76.244	75.666	76.567	-0.16854					24	21	2	0	0	0	0.024438	1	8978	8978		29.17	6.1276	1	326310			74541	6234	51982	52068	81896	81896					0.0520268708819458
SNILSHQPE	9	Unmodified	_SNILSHQPE_					0	0	0			REV__ENSG00000171448|ENST00000373656|ZBTB26	REV__ENSG00000171448|ENST00000373656|ZBTB26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2868041992188	2	512.756538	1023.49852	-0.0011013	-5.6472E-07	-3.2551	-0.0016691	-3.2562	-0.0016697	513.2573275312428	72.295	0.24386	72.018	71.868	72.112	-0.2769					6	5	2	0	0	0	0.024447	1	8474	8474		25.574	9.1009	1	68804	+		74542	26564	51983	52069	81897	81897					-0.012286084588595259
SNISKKSIMVQ	11	Unmodified	_SNISKKSIMVQ_					0	0	0		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2192687988281	3	412.232312	1233.67511	-1.198	-0.00049384	-2.2585	-0.00093104	-3.4565	-0.0014249	412.23107761771956	40.731	0.39273	40.501	40.378	40.771	-0.23029					16	10	2	0	0	0	0.024789	1	3556	3556		21.032	0.71722	1	171380			74543	7409	51984	52070	81898	81898					0.06761684379921462
SNISTRLPS	9	Unmodified	_SNISTRLPS_					0	0	0			REV__JPH3|p.L354Cfs*117|1|0.25|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant	REV__JPH3|p.L354Cfs*117|1|0.25|ENSG00000154118|chr16:87644931-87644931|C/-|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	487.7669677734375	2	487.766906	973.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40	1	40	39.5	40.5	0								0	0	0	0.1192	1	3485	3485		88.177	0.42264	1		+		74544	24934	51985	52071	81899	81899					0.03143981920800343
SNKAKEQR	8	Unmodified	_SNKAKEQR_					0	0	0			REV__ENSG00000152078|ENST00000370203|TLCD4	REV__ENSG00000152078|ENST00000370203|TLCD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7503662109375	2	480.764697	959.514842	-0.71129	-0.00034196	2.3405	0.0011252	1.6292	0.00078326	480.7668340009634	30.668	0.36958	30.668	30.55	30.92	0					11	8	2	0	0	0	0.027866	1	1980	1980		40.778	17.736	1	37801	+		74545	24813	51986	52072	81900	81900					0.033465174979028234
SNKFLALYKP	10	Unmodified	_SNKFLALYKP_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.2750244140625	2	590.839874	1179.66519	-0.41935	-0.00024777	0.046839	2.7674E-05	-0.37251	-0.00022009	590.8397275736031	89.691	0.30402	89.554	89.402	89.706	-0.13761					9	6	2	0	0	0	0.03519	1	10941	10941		30.318	0	1	61010	+		74546	36731	51987	52073	81901	81901					0.082548644368444
SNKGRGMLL	9	Unmodified	_SNKGRGMLL_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.27960205078125	2	488.273844	974.533135	-0.66694	-0.00032565	0.92279	0.00045058	0.25585	0.00012492	488.2740141836127	23.462	0.7345	23.539	23.312	24.046	0.076241					35	16	3	0	0	0	0.024495	1	860	860		14.137	0	1	410180	+		74547	33611	51988	52074	81902	81902					0.04484936148264751
SNKICSPKLY	10	Unmodified	_SNKICSPKLY_					0	0	0			REV__ALOX12|p.E658K|1|0.26|ENSG00000108839|chr17:7010403-7010403|G/A|missense_variant	REV__ALOX12|p.E658K|1|0.26|ENSG00000108839|chr17:7010403-7010403|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.777587890625	2	576.807716	1151.60088	-0.0031798	-1.8341E-06	-3.2897	-0.0018975	-3.2929	-0.0018994	576.805686456154	46.761	0.60791	46.665	46.438	47.046	-0.096653					35	16	3	0	0	0	0.03519	1	4494	4494		18.262	8.5564	1	1215000	+		74548	19109	51989	52075	81903	81903					0.031143412884148347
SNKILMQLQA	10	Unmodified	_SNKILMQLQA_					0	0	0		nc|ENSG00000198814|P32189-1|GK;nc|ENSG00000198814|P32189-4|GK;nc|ENSG00000198814|P32189-2|GK;ENSG00000229894|ENST00000505354|GK3;ENSG00000198814|ENST00000427190|GK	nc|ENSG00000198814|P32189-1|GK	nc|ENSG00000198814|P32189-1|GK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.794921875	2	573.320991	1144.62743	-0.74938	-0.00042964	-3.2705	-0.001875	-4.0198	-0.0023047	573.3186809066553	69.15	0.41842	68.888	68.666	69.084	-0.26166					17	9	3	0	0	0	0.03519	1	7997	7997		24.519	0	1	86818			74549	10208	51990	52076	81904	81904					0.0609003017973464
SNKKSRKI	8	Unmodified	_SNKKSRKI_					0	0	0			REV__ENST00000482101.1_1_6:152265336-152304632:+|nuORF	REV__ENST00000482101.1_1_6:152265336-152304632:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.801025390625	2	480.801083	959.587613	-0.2816	-0.00013539	-0.68594	-0.0003298	-0.96754	-0.00046519	480.8006558847944	94.33	2.1067	94.192	93.703	95.809	-0.13779					175	48	6	0	0	0	1.0106	1	11583	11583		35.618	2.1027	1	20329000	+		74550	20916	51991	52077	81905	81905					0.10620271291338668
SNKLFKQL	8	Unmodified	_SNKLFKQL_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.29278564453125	2	489.292559	976.570566	-0.49524	-0.00024232	0.77183	0.00037765	0.27659	0.00013533	489.29282211853024	66.897	1.2227	66.921	66.601	67.824	0.023911					51	29	2	0	0	0	0.80469	1	7895	7895		58.782	4.0056	1	3202900	+		74551	23401	51992	52078	81906	81906					0.0813435068552053
SNKLHFAF	8	Unmodified	_SNKLHFAF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.25567626953125	2	482.255977	962.497401	-0.5261	-0.00025372	0.49049	0.00023654	-0.035616	-1.7176E-05	482.25605263735434	48.574	0.92484	48.474	48.184	49.109	-0.09935					62	24	4	0	0	0	0.2917	3	4841	4829;4841;4856		115.46	47.269	1	3478600			74552	9625	51993	52079	81907;81908;81909	81908					0.014652219628942476
SNKLHFAF	8	Unmodified	_SNKLHFAF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.256103515625	2	482.255977	962.497401	-0.73042	-0.00035225	0.59016	0.00028461	-0.14026	-6.764E-05	482.25607077380715	48.956	0.87324	48.676	48.288	49.161	-0.27977					58	23	4	0	0	0	0.10945	3	4867	4867;4878;4890		157.99	71.055	1	3797800			74553	9625	51993	52079	81910;81911;81912	81910					0.014652219628942476
SNKLHFAF	8	Unmodified	_SNKLHFAF_					0	0	0		ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	ENSG00000187446|ENST00000334660|CHP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.256591796875	2	482.255977	962.497401	-0.023438	-1.1303E-05	-0.044699	-2.1556E-05	-0.068137	-3.2859E-05	482.25577573015454	48.755	0.88121	48.573	48.234	49.115	-0.18206					62	23	4	0	0	0	0.26064	3	4843	4843;4853;4867		128.86	57.565	1	3436900			74554	9625	51993	52079	81913;81914;81915	81913					0.014652219628942476
SNKMQLPEN	9	Unmodified	_SNKMQLPEN_					0	0	0		nc|ENSG00000155890|Q8IWZ5-2|TRIM42;ENSG00000155890|ENST00000286349|TRIM42	nc|ENSG00000155890|Q8IWZ5-2|TRIM42	nc|ENSG00000155890|Q8IWZ5-2|TRIM42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2822265625	2	530.758223	1059.50189	-0.92765	-0.00049236	-1.0621	-0.0005637	-1.9897	-0.0010561	530.7576299616853	40.249	0.44668	40.272	40.013	40.46	0.023006					13	11	2	0	0	0	0.024466	1	3462	3462		31.53	0	1	145950			74555	6495	51994	52080	81916	81916					-0.02547681676492175
SNKPIDSNP	9	Unmodified	_SNKPIDSNP_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2554626464844	2	486.243264	970.471974	-0.55694	-0.00027081	-2.9941	-0.0014559	-3.5511	-0.0017267	486.24163221428466	61.072	0.31163	60.819	60.66	60.971	-0.25373					12	7	2	0	0	0	0.024511	1	6801	6801		25.574	8.2091	1	124420	+		74556	37044	51995	52081	81917	81917					-0.014442973502013956
SNKRVRPL	8	Unmodified	_SNKRVRPL_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.77178955078125	2	485.30125	968.587947	0.1058	5.1346E-05	2.2721	0.0011027	2.3779	0.001154	485.30214797095954	76.608	0.33857	76.357	76.103	76.442	-0.25162					12	7	2	0	0	0	0.027866	1	9069	9069		30.504	0	1	93065			74557	8417	51996	52082	81918	81918					0.10239691011190644
SNKSHKVK	8	Unmodified	_SNKSHKVK_					0	0	0		nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF	nc|ENSG00000151092|Q96IV0-3|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.81048583984375	2	464.272158	926.529764	-0.57089	-0.00026505	-1.3236	-0.00061451	-1.8945	-0.00087956	464.2716259219229	38.927	0.75276	38.927	38.395	39.148	0					38	19	4	0	0	0	0.027866	1	3280	3280		30.318	0	1	1134500			74558	6176	51997	52083	81919	81919					0.06356009365902082
SNKVDQSPP	9	Unmodified	_SNKVDQSPP_					0	0	0			REV__nc|ENSG00000137474|Q13402-5|MYO7A	REV__nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.8050537109375	2	486.243264	970.471974	-0.71785	-0.00034905	0.55827	0.00027146	-0.15957	-7.7592E-05	486.2435556522942	35.056	0.75091	35.056	34.629	35.38	0					44	19	3	0	0	0	0.024288	1	2601	2601		44.377	3.599	1	251600	+		74559	23757	51998	52084	81920	81920					-0.01444297350190027
SNKVGLQEP	9	Unmodified	_SNKVGLQEP_					0	0	0		ENST00000359139.7_1_22:50882795-50883161:+|nuORF	ENST00000359139.7_1_22:50882795-50883161:+|nuORF	ENST00000359139.7_1_22:50882795-50883161:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7895202636719	2	486.261456	970.50836	-0.30821	-0.00014987	-0.051082	-2.4839E-05	-0.35929	-0.00017471	486.2615216371017	54.617	0.39084	54.715	54.525	54.916	0.098015					18	10	2	0	0	0	0.024506	1	5936	5936		30.504	8.5438	1	212790			74560	12730	51999	52085	81921	81921					0.02192579546522211
SNKVRKLR	8	Unmodified	_SNKVRKLR_					0	0	0		nc|ENSG00000089091|Q9NVP4-3|DZANK1	nc|ENSG00000089091|Q9NVP4-3|DZANK1	nc|ENSG00000089091|Q9NVP4-3|DZANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.76617431640625	2	500.82235	999.630147	0.13681	6.8516E-05	1.4666	0.0007345	1.6034	0.00080302	500.8232912941425	74.574	0.38995	74.298	74.089	74.479	-0.27573					15	8	2	0	0	0	0.027866	1	8776	8776		12.207	0	1	91236			74561	18104	52000	52086	81922	81922					0.130316664195675
SNLAVIEH	8	Unmodified	_SNLAVIEH_					0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7878723144531	2	441.737617	881.460681	0.23287	0.00010287	0.06898	3.0471E-05	0.30185	0.00013334	441.7375822988291	42.561	0.93128	42.587	42.255	43.186	0.026012					52	25	3	0	0	0	0.027866	1	3898	3898		53.351	17.733	1	862620	+		74562	27538	52001	52087	81923	81923					0.015209253463353889
SNLELYQQY	9	Unmodified	_SNLELYQQY_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.3056030273438	2	579.277303	1156.54005	-0.54673	-0.00031671	-2.2837	-0.0013229	-2.8304	-0.0016396	579.2759283711657	42.067	0.62939	41.837	41.472	42.101	-0.2303					28	17	2	0	0	0	0.024495	1	3750	3750		19.997	5.1319	1	437150			74563	4516	52002	52088	81924	81924					-0.03195472490187967
SNLFAVVH	8	Unmodified	_SNLFAVVH_					0	0	0		SNTG1|p.L476V|1|0.17|ENSG00000147481|chr8:50792701-50792701|C/G|missense_variant	SNTG1|p.L476V|1|0.17|ENSG00000147481|chr8:50792701-50792701|C/G|missense_variant	SNTG1|p.L476V|1|0.17|ENSG00000147481|chr8:50792701-50792701|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.2613525390625	2	443.742702	885.470852	-0.83171	-0.00036906	4.3124	0.0019136	3.4807	0.0015445	443.74464715521333	37.687	0.49993	37.468	37.144	37.644	-0.21848					28	12	3	0	0	0	0.027866	1	3054	3054		29.842	21.61	1	245090			74564	37910	52003	52089	81925	81925					0.02353533071561742
SNLFAVVH	8	Unmodified	_SNLFAVVH_					0	0	0		SNTG1|p.L476V|1|0.17|ENSG00000147481|chr8:50792701-50792701|C/G|missense_variant	SNTG1|p.L476V|1|0.17|ENSG00000147481|chr8:50792701-50792701|C/G|missense_variant	SNTG1|p.L476V|1|0.17|ENSG00000147481|chr8:50792701-50792701|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.742702	885.470852	-0.19743	-8.7606E-05	5.1055	0.0022655	4.908	0.0021779	443.7446121147986	37.628	0.41882	37.435	37.269	37.687	-0.193	-0.031408	0.00032689	NaN	54.765	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118110			74565	37910	52003	52089							0.02353533071561742
SNLFMWFMW	9	Unmodified	_SNLFMWFMW_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	630.2869262695312	2	631.28028	1260.54601	0.40371	0.00025485	3.4269	0.0021633	3.8306	0.0024182	631.7859230156937	74.427	0.21561	74.244	74.094	74.309	-0.18279					6	4	2	0	0	0	0.024288	1	8746	8746		37.159	0	1	42936	+		74566	27894	52004	52090	81926	81926					-0.0738436878389166
SNLHRHEKI	9	Unmodified	_SNLHRHEKI_					0	0	0		ENSG00000122386|ENST00000219091|ZNF205	ENSG00000122386|ENST00000219091|ZNF205	ENSG00000122386|ENST00000219091|ZNF205	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.7349243164062	2	567.312346	1132.61014	0.51458	0.00029193	4.1341	0.0023453	4.6487	0.0026373	567.3144460967511	59.253	0.99312	59.065	58.819	59.812	-0.18795					34	24	2	0	0	0	0.024541	1	6563	6563		23.523	9.3856	1	120440			74567	3921	52005	52091	81927	81927					0.049138706889380046
SNLIEVFVD	9	Unmodified	_SNLIEVFVD_					0	0	0		nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2521362304688	2	518.27149	1034.52843	0.10264	5.3196E-05	-0.23945	-0.0001241	-0.13681	-7.0906E-05	518.2711987824473	74.936	0.7497	74.673	74.404	75.153	-0.26325					28	17	2	0	0	0	0.024495	1	8899	8899		19.997	4.355	1	174440			74568	969	52006	52092	81928	81928					0.012543304864948368
SNLIIEKT	8	Unmodified	_SNLIIEKT_					0	0	0			REV__ENST00000420836.2_1_12:68429859-68429931:+|nuORF	REV__ENST00000420836.2_1_12:68429859-68429931:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.258056640625	2	459.26875	916.522947	-0.93492	-0.00042938	-0.62786	-0.00028836	-1.5628	-0.00071774	459.27002597375065	37.989	0.21634	37.768	37.649	37.866	-0.22149					7	5	2	0	0	0	0.027866	1	3085	3085		10.265	4.7074	1	46001	+		74569	32170	52007	52093	81929	81929					0.061346516946514384
SNLLHSTL	8	Unmodified	_SNLLHSTL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2591247558594	2	442.745442	883.476331	-0.30679	-0.00013583	1.624	0.00071904	1.3172	0.0005832	442.7454970268282	23.326	0.52876	23.326	23.165	23.694	0					15	12	2	0	0	0	0.027866	1	950	950		17.365	5.1581	1	36194			74570	10600	52008	52094	81930	81930					0.02993211863383749
SNLLRLRV	8	Unmodified	_SNLLRLRV_					0	0	0		ENST00000523340.1_1_8:42389945-42390071:-|nuORF	ENST00000523340.1_1_8:42389945-42390071:-|nuORF	ENST00000523340.1_1_8:42389945-42390071:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.8114318847656	2	485.811451	969.608348	-0.029709	-1.4433E-05	-0.13176	-6.4011E-05	-0.16147	-7.8444E-05	485.8112817338069	42.35	0.72332	42.12	41.832	42.555	-0.23029					46	19	3	0	0	0	0.87148	1	3804	3804		53.351	5.4358	1	2536000			74571	16042	52009	52095	81931	81931					0.12232861670997863
SNLNGVIIV	9	Unmodified	_SNLNGVIIV_					0	0	0			REV__ENSG00000145794|ENST00000503335|MEGF10	REV__ENSG00000145794|ENST00000503335|MEGF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7641296386719	2	464.776742	927.538931	-1.0491	-0.00048762	0.0089717	4.1699E-06	-1.0402	-0.00048345	464.77646259613385	38.316	0.23177	38.343	38.264	38.496	0.027279					8	6	2	0	0	0	0.024367	1	3151	3151		44.377	9.2252	1	90450	+		74572	24433	52010	52096	81932	81932					0.07226357931574512
SNLNKVLN	8	Unmodified	_SNLNKVLN_					0	0	0			REV__ENSG00000169126|ENST00000305242|ODAD2;REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	REV__nc|ENSG00000169126|Q5T2S8-2|ODAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2686767578125	2	451.258717	900.50288	-1.5542	-0.00070136	1.9268	0.00086949	0.37258	0.00016813	451.2594835121528	52.341	0.44615	52.072	51.831	52.277	-0.26903					18	11	2	0	0	0	0.027866	1	5400	5400		21.96	0	1	183270	+		74573	26322;36912	52011	52097	81933	81933					0.04864900754705559
SNLNYQCK	8	Unmodified	_SNLNYQCK_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.25909423828125	2	485.226559	968.438566	0.27269	0.00013232	-1.1155	-0.00054129	-0.84286	-0.00040898	485.2258364598251	21.071	0.14444	20.894	20.822	20.967	-0.17721					4	2	2	0	0	0	0.027866	1	634	634		29.15	0	1	29806			74574	5446	52012	52098	81934	81934					-0.04691622393738726
SNLPLNKT	8	Unmodified	_SNLPLNKT_					0	0	0		ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2799072265625	2	443.753267	885.491981	-0.66955	-0.00029711	-0.14574	-6.4671E-05	-0.81528	-0.00036178	443.7532928856033	55.045	0.46069	55.143	54.949	55.409	0.098015					17	12	2	0	0	0	0.027866	1	5982	5982		21.96	4.5949	1	205880			74575	3033	52013	52099	81935	81935					0.04465498380432109
SNLPRGLL	8	Unmodified	_SNLPRGLL_					0	0	0			REV__ENST00000255977.6_2_7:140154087-140154351:-|nuORF	REV__ENST00000255977.6_2_7:140154087-140154351:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801818847656	2	435.263802	868.513051	-0.48263	-0.00021007	0.91153	0.00039676	0.4289	0.00018669	435.26407674985006	39.271	0.53337	39.295	39.028	39.562	0.023727					23	14	2	0	0	0	0.027866	1	3319	3319		45.952	22.909	1	935660	+		74576	29547	52014	52100	81936	81936					0.07353508479945958
SNLQNNVDL	9	Unmodified	_SNLQNNVDL_					0	0	0			REV__nc|ENSG00000137948|Q58F21-5|BRDT	REV__nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.77862548828125	2	508.753995	1015.49344	-0.43424	-0.00022092	-2.484	-0.0012637	-2.9182	-0.0014846	508.7532878988565	78.804	0.21003	78.804	78.741	78.951	0					6	4	2	0	0	0	0.024344	1	9758	9758		45.972	0	1	50151	+		74577	23800	52015	52101	81937	81937					-0.0136891232148173
SNLQWRPE	8	Unmodified	_SNLQWRPE_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2879028320312	2	515.259248	1028.50394	-0.62571	-0.0003224	-1.8898	-0.00097376	-2.5156	-0.0012962	515.2593667244854	34.489	0.206	34.313	34.168	34.374	-0.17557					7	4	2	0	0	0	0.027866	1	2517	2517		40.778	0	1	27115			74578	5346	52016	52102	81938	81938					-0.00916884876369295
SNLSSVSGHS	10	Unmodified	_SNLSSVSGHS_					0	0	0			REV__EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	REV__EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7669677734375	2	487.73052	973.446488	0.12028	5.8664E-05	0.48817	0.00023809	0.60844	0.00029676	487.7307765774824	40.227	0.42682	40.227	39.988	40.414	0					17	11	2	0	0	0	0.03519	1	3485	3485		75.043	0	1	112780	+		74579	22936	52017	52103	81939	81939					-0.041297718726013954
SNLSTIMPA	9	Unmodified	_SNLSTIMPA_					0	0	0		ENST00000369754.7_2_6:82455607-82455742:-|nuORF	ENST00000369754.7_2_6:82455607-82455742:-|nuORF	ENST00000369754.7_2_6:82455607-82455742:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.25341796875	2	467.239135	932.463718	0.13156	6.1471E-05	1.6314	0.00076225	1.7629	0.00082372	467.2399106450269	34.389	0.50095	34.384	34.029	34.53	-0.0045624					22	12	2	0	0	0	0.024427	1	2510	2510		34.173	0	1	98123			74580	12935	52018	52104	81940	81940					-0.005215675911699691
SNLTKELNF	9	Unmodified	_SNLTKELNF_					0	0	0		ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	ENSG00000130300|ENST00000252590|PLVAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2841186523438	2	533.282389	1064.55022	5.203	0.0027746	-0.61377	-0.00032731	4.5892	0.0024473	533.2818758864512	16.878	0.69662	16.625	16.48	17.176	-0.25378					42	17	4	0	0	0	0.87448	1	102	102		34.173	0.65696	1	355120			74581	4408	52019	52105	81941	81941					0.020531352350417365
SNLVLRPLLV	10	Unmodified	_SNLVLRPLLV_					0	0	0			REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	REV__ENST00000590153.1_1_17:28252476-28257245:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.3602294921875	2	562.363516	1122.71248	0.32223	0.00018121	-4.4666	-0.0025118	-4.1443	-0.0023306	562.3609345313919	105.71	0.31506	105.55	105.46	105.77	-0.16133					24	12	3	0	0	0	1.1246	1	13158	13158		23.523	1.8369	1	118720	+		74582	35695	52020	52106	81942	81942					0.15603143707835443
SNLVQPSSTQT	11	Unmodified	_SNLVQPSSTQT_					0	0	0			REV__ENST00000529348.1_1_11:130109693-130131768:-|nuORF	REV__ENST00000529348.1_1_11:130109693-130131768:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	581.2888793945312	2	581.290942	1160.56733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.525	1	97.364	96.864	97.864	-0.16106								0	0	0	1.3148	1	12051	12051		25.126	0	1		+		74583	28163	52021	52107	81943	81943					-0.0065298894980969635
SNLVTIHLL	9	Unmodified	_SNLVTIHLL_					0	0	0			REV__ENSG00000182405|ENST00000397766|PGBD4	REV__ENSG00000182405|ENST00000397766|PGBD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.265380859375	2	505.305667	1008.59678	-0.33537	-0.00016946	0.67074	0.00033893	0.33537	0.00016946	505.3059389629835	63.284	0.8562	63.033	62.48	63.336	-0.25141					39	21	3	0	0	0	0.024457	1	7308	7308		15.642	0	1	327050	+		74584	27474	52022	52108	81944	81944					0.09282619856992369
SNLWIFLI	8	Unmodified	_SNLWIFLI_					0	0	0		ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.76885986328125	2	503.292028	1004.5695	-0.97019	-0.00048829	-4.2025	-0.0021151	-5.1727	-0.0026034	503.28973704659046	65.848	0.65736	65.635	65.379	66.037	-0.21327					23	15	2	0	0	0	0.027866	1	7510	7510		19.36	3.7182	1	304100			74585	3994	52023	52109	81945	81945					0.06740136316614098
SNMLRITTK	9	Unmodified	_SNMLRITTK_					0	0	0			REV__ENSG00000073849|ENST00000169298|ST6GAL1	REV__ENSG00000073849|ENST00000169298|ST6GAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2554321289062	2	532.300059	1062.58556	-0.29423	-0.00015662	-3.4312	-0.0018264	-3.7254	-0.0019831	532.2981555634917	38.885	0.58151	38.659	38.402	38.983	-0.2257					39	15	3	0	0	0	0.024288	1	3227	3227		62.107	24.948	1	627350	+		74586	20512	52024	52110	81946	81946					0.056774744911763264
SNMVRLLEL	9	Oxidation (M)	_SNM(Oxidation (M))VRLLEL_		SNM(1)VRLLEL		SNM(85)VRLLEL	0	0	1			REV__ENSG00000179041|ENST00000320270|RRS1	REV__ENSG00000179041|ENST00000320270|RRS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2861328125	2	545.799891	1089.58523	-1.0503	-0.00057325	1.5285	0.00083428	0.47825	0.00026103	545.8005556429758	83.888	1.0174	83.888	83.692	84.709	0					34	23	2	0	0	0	0.023473	1	10578	10578		85.161	17.667	1	183620	+		74587	27229	52025	52111	81947	81947		807			0.0440205477134441
SNMVTKARA	9	Unmodified	_SNMVTKARA_					0	0	0			REV__nc|ENSG00000130816|P26358|DNMT1	REV__nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2683410644531	2	489.263476	976.512399	-0.016995	-8.3149E-06	-0.74334	-0.00036369	-0.76034	-0.00037201	489.26299969660005	47.566	0.46367	47.413	47.3	47.764	-0.15301					16	13	2	0	0	0	0.024367	1	4774	4774		22.58	3.4761	1	94703	+		74588	23159	52026	52112	81948	81948					0.02320345768578136
SNNFLDRLP	9	Unmodified	_SNNFLDRLP_					0	0	0		ENSG00000166159|ENST00000299194|LRTM2	ENSG00000166159|ENST00000299194|LRTM2	ENSG00000166159|ENST00000299194|LRTM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.780517578125	2	538.28018	1074.54581	-1.0939	-0.00058884	-4.3575	-0.0023455	-5.4514	-0.0029344	538.2794246555877	35.396	0.95678	35.44	34.941	35.898	0.04406					62	24	4	0	0	0	0.024323	1	2688	2688		44.117	6.3053	1	5824200			74589	7512	52027	52113	81949	81949					0.011516708121462216
SNNFLGLNHHP	11	Unmodified	_SNNFLGLNHHP_					0	0	0		ENST00000352732.9_1_15:89740731-89740836:+|nuORF	ENST00000352732.9_1_15:89740731-89740836:+|nuORF	ENST00000352732.9_1_15:89740731-89740836:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	417.2068176269531	3	417.207266	1248.59997	-0.60416	-0.00025206	-0.51777	-0.00021602	-1.1219	-0.00046808	417.2070462680652	26.451	0.97224	26.288	25.951	26.923	-0.16331					77	25	4	0	0	0	1.0059	1	1356	1356		35.496	2.7451	1	3003000			74590	12609	52028	52114	81950	81950					-0.014387370362783258
SNNFLYLI	8	Unmodified	_SNNFLYLI_					0	0	0			REV__ENSG00000186907|ENST00000335099|RTN4RL2	REV__ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.27154541015625	2	492.263468	982.512382	0.065499	3.2243E-05	4.4784	0.0022045	4.5439	0.0022368	492.26539620064426	63.946	0.93819	63.695	63.228	64.166	-0.25141					52	25	4	0	0	0	0.027866	1	7401	7401		20.482	0	1	223080	+		74591	27893	52029	52115	81951	81951					0.02042669040235978
SNNIFFLL	8	Unmodified	_SNNIFFLL_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.74798583984375	2	484.26601	966.517468	0.76335	0.00036966	2.8746	0.0013921	3.6379	0.0017617	484.26721171447934	59.19	0.91743	58.949	58.661	59.578	-0.24166					37	22	3	0	0	0	0.027866	1	6487	6487		12.959	0	1	463420	+		74592	27297	52030	52116	81952	81952					0.03286972902856178
SNNIRQLL	8	Unmodified	_SNNIRQLL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27996826171875	2	479.277441	956.540328	1.8949	0.0009082	2.791	0.0013376	4.6859	0.0022458	479.27863663895505	59.176	1.1292	58.989	58.538	59.667	-0.18705					88	30	4	0	0	0	0.81662	1	6719	6719		57.811	5.5121	1	7579700			74593	4481	52031	52117	81953	81953					0.06031992020314192
SNNIVVVPE	9	Unmodified	_SNNIVVVPE_					0	0	0		ENST00000558500.5_1_15:99796138-99837514:+|nuORF;ENST00000558771.1_1_15:99827465-99874290:+|nuORF;ENSG00000168904|ENST00000301981|LRRC28;nc|ENSG00000168904|Q86X40-2|LRRC28	ENST00000558500.5_1_15:99796138-99837514:+|nuORF;ENSG00000168904|ENST00000301981|LRRC28;nc|ENSG00000168904|Q86X40-2|LRRC28	nc|ENSG00000168904|Q86X40-2|LRRC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2615966796875	2	485.763832	969.513111	-1.1914	-0.00057875	0.04724	2.2947E-05	-1.1442	-0.00055581	485.7636030333557	37.971	0.47951	37.888	37.636	38.116	-0.082512					24	13	3	0	0	0	0.024466	1	3167	3167		24.519	0	1	851400			74594	7878;18497;16751	52032	52118	81954	81954					0.027134636892810704
SNNMTYLI	8	Unmodified	_SNNMTYLI_					0	0	0		ENST00000533089.5_1_1:92147622-92147718:-|nuORF	ENST00000533089.5_1_1:92147622-92147718:-|nuORF	ENST00000533089.5_1_1:92147622-92147718:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.97479248046875	2	478.23131	954.448068	-0.27404	-0.00013106	-0.18966	-9.0703E-05	-0.4637	-0.00022176	478.23132687074497	44.236	0.44522	44.273	43.998	44.443	0.0369					21	12	3	0	0	0	0.027866	1	4112	4112		34.173	3.6689	1	594290			74595	16308	52033	52119	81955	81955					-0.030978541082276934
SNNTSHNLN	9	Unmodified	_SNNTSHNLN_					0	0	0			REV__ENST00000533466.1_1_11:28098585-28098630:-|nuORF	REV__ENST00000533466.1_1_11:28098585-28098630:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7532653808594	2	500.725769	999.436986	0.14826	7.4238E-05	0.32266	0.00016156	0.47092	0.0002358	500.72615968281497	69.323	0.16545	69.076	68.954	69.12	-0.24622					5	3	2	0	0	0	0.024447	1	8043	8043		25.574	0	1	28643	+		74596	34606	52034	52120	81956	81956					-0.06275540158139847
SNPGENHD	8	Unmodified	_SNPGENHD_					0	0	0		ENST00000239906.9_1_5:137676927-137677044:+|nuORF	ENST00000239906.9_1_5:137676927-137677044:+|nuORF	ENST00000239906.9_1_5:137676927-137677044:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7796936035156	2	435.172838	868.331124	0.56954	0.00024785	-1.0739	-0.00046732	-0.50434	-0.00021947	435.172266051557	39.79	0.46182	39.79	39.562	40.024	0					20	12	2	0	0	0	0.027866	1	3488	3488		34.173	17.699	1	331760			74597	11276	52035	52121	81957	81957					-0.10830876003615231
SNPGLPLLTE	10	Unmodified	_SNPGLPLLTE_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7840576171875	2	520.784764	1039.55498	-0.95638	-0.00049807	-0.21074	-0.00010975	-1.1671	-0.00060781	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	1.1265	1	13315	13315		24.519	0.31644	1	3485700			74598	3426	52036	52122	81958	81958					0.03678019377821329
SNPKEELLIT	10	Unmodified	_SNPKEELLIT_					0	0	0			REV__CDH9|p.Q25E|1|0.14|ENSG00000113100|chr5:26988261-26988261|G/C|missense_variant	REV__CDH9|p.Q25E|1|0.14|ENSG00000113100|chr5:26988261-26988261|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.286865234375	2	572.316428	1142.6183	-1.3954	-0.00079862	1.6671	0.0009541	0.27167	0.00015548	572.3149481839639	65.387	0.16185	65.179	65.099	65.261	-0.20747					5	3	2	0	0	0	0.03519	1	7480	7480		24.519	0	1	80482	+		74599	19283	52037	52123	81959	81959					0.05269960095051829
SNPLLFVPT	9	Unmodified	_SNPLLFVPT_					0	0	0			REV__ENST00000501830.2_1_15:30917398-30917659:-|nuORF	REV__ENST00000501830.2_1_15:30917398-30917659:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.26666259765625	2	494.279118	986.543683	-0.21983	-0.00010866	-4.4403	-0.0021947	-4.6601	-0.0023034	494.27684968058594	49.308	0.79895	49.155	48.682	49.481	-0.15277					43	21	3	0	0	0	0.024344	1	4995	4995		45.972	0	1	1204800	+		74600	33914	52038	52124	81960	81960					0.049872420743326984
SNQGGKFLP	9	Unmodified	_SNQGGKFLP_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2716369628906	2	474.250892	946.48723	-0.10141	-4.8094E-05	2.7115	0.0012859	2.6101	0.0012378	474.25192516318316	48.2	0.27	48.047	47.957	48.227	-0.153					11	7	2	0	0	0	0.024436	1	4891	4891		23.042	0	1	132360	+		74601	22084	52039	52125	81961	81961					0.011846142376612079
SNQGYKCD	8	Unmodified	_SNQGYKCD_					0	0	0			REV__ENST00000409036.5_1_2:173894975-173916371:+|nuORF	REV__ENST00000409036.5_1_2:173894975-173916371:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.76678466796875	2	457.687267	913.359981	-0.02052	-9.3919E-06	1.0207	0.00046716	1.0002	0.00045776	457.68761432575076	44.08	0.31833	44.117	43.923	44.241	0.036903					14	8	2	0	0	0	0.027866	1	4104	4104		25.574	0	1	187180	+		74602	31945	52040	52126	81962	81962					-0.10016474698829825
SNQIKEDD	8	Unmodified	_SNQIKEDD_					0	0	0			REV__nc|ENSG00000166477|Q8WVC0-2|LEO1	REV__nc|ENSG00000166477|Q8WVC0-2|LEO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7621154785156	2	474.717079	947.419604	0.78081	0.00037067	-0.053582	-2.5436E-05	0.72723	0.00034523	474.7169700254859	47.129	0.46975	47.129	46.892	47.361	0					22	12	2	0	0	0	0.027866	1	4738	4738		19.997	0	1	351930	+		74603	26022	52041	52127	81963	81963					-0.056208804838092874
SNQKTVKPS	9	Unmodified	_SNQKTVKPS_					0	0	0			REV__ENSG00000183783|ENST00000360029|KCTD8	REV__ENSG00000183783|ENST00000360029|KCTD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2972717285156	2	494.774731	987.534909	-0.037842	-1.8723E-05	0.92328	0.00045682	0.88544	0.00043809	494.7750758095986	54.94	0.43204	54.709	54.459	54.891	-0.23087					18	11	2	0	0	0	0.024447	1	5829	5829		40.778	5.1599	1	194630	+		74604	27610	52042	52128	81964	81964					0.04064268437866758
SNQLSARPE	9	Unmodified	_SNQLSARPE_					0	0	0		ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2534484863281	2	501.254163	1000.49377	-0.15087	-7.5622E-05	-3.388	-0.0016982	-3.5388	-0.0017739	501.25234835763666	72.807	0.79725	72.807	72.493	73.29	0					40	19	3	0	0	0	0.32064	1	8868	8868		72.879	5.3856	1	880650			74605	3467	52043	52129	81965	81965					-0.006454926016203899
SNQPEKNI	8	Unmodified	_SNQPEKNI_					0	0	0			REV__ENSG00000158169|ENST00000289081|FANCC	REV__ENSG00000158169|ENST00000289081|FANCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2870788574219	2	465.237981	928.461409	-0.94481	-0.00043956	-1.9171	-0.00089189	-2.8619	-0.0013315	465.2367894617267	75.162	0.23898	75.162	74.955	75.194	0					10	5	3	0	0	0	0.027866	1	9204	9204		30.504	0	1	136390	+		74606	25180	52044	52130	81966	81966					-0.005682800046201919
SNQPILLSQGW	11	Unmodified	_SNQPILLSQGW_					0	0	0		ENST00000527941.5_3_1:52875172-52889607:-|nuORF	ENST00000527941.5_3_1:52875172-52889607:-|nuORF	ENST00000527941.5_3_1:52875172-52889607:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.3316650390625	2	621.827495	1241.64044	0.91541	0.00056923	2.3143	0.0014391	3.2297	0.0020083	621.8289054061597	99.037	0.83263	98.901	98.637	99.469	-0.13526					18	9	2	0	0	0	1.0521	1	12289	12289		24.519	1.4767	1	89373			74607	16167	52045	52131	81967	81967					0.029281845634841375
SNQPLGIGY	9	Unmodified	_SNQPLGIGY_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7713623046875	2	474.742899	947.471246	-0.4007	-0.00019023	-2.3056	-0.0010946	-2.7063	-0.0012848	474.7437032559051	29.064	0.21745	28.915	28.826	29.044	-0.14952					5	4	2	0	0	0	0.024412	1	1740	1740		11.511	0	1	18671	+		74608	22253	52046	52132	81968	81968					-0.004590919992324416
SNQQLEDL	8	Unmodified	_SNQQLEDL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;ATRX|p.M2410Sfs*7|1|0.03|ENSG00000085224|chrX:77508606-77508607|-/GACTCAATCCTGACAGG|frameshift_variant;ATRX|p.L2409Ffs*43|1|0.03|ENSG00000085224|chrX:77508605-77508606|-/GAAA|frameshift_variant;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.27178955078125	2	473.727446	945.44034	-0.78942	-0.00037397	-1.0211	-0.00048372	-1.8105	-0.0008577	473.72694559928686	48.299	0.26088	48.023	47.89	48.151	-0.27598					9	6	2	0	0	0	0.027866	1	4763	4763		47.916	15.103	1	94613			74609	164	52047	52133	81969	81969					-0.03456290104134041
SNQQLFKI	8	Unmodified	_SNQQLFKI_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.29278564453125	2	489.274367	976.53418	-0.45464	-0.00022244	0.49591	0.00024263	0.041265	2.019E-05	489.27444838599564	66.982	0.58096	67.006	66.769	67.35	0.023911					19	13	2	0	0	0	0.027866	1	7895	7895		51.335	0	1	248550			74610	10603	52048	52134	81970	81970					0.044974737888196614
SNQRKRAN	8	Unmodified	_SNQRKRAN_					0	0	0		LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant;nc|ENSG00000138709|Q659C4-9|LARP1B;ENSG00000138709|ENST00000326639|LARP1B;nc|ENSG00000138709|Q659C4-3|LARP1B	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	LARP1B|p.M753Sfs*21|1|0.08|ENSG00000138709|chr4:128200614-128200614|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2794189453125	2	487.267939	972.521324	-0.44929	-0.00021893	3.5216	0.001716	3.0723	0.0014971	487.2696777054666	51.25	0.29298	51.101	50.933	51.226	-0.14916					11	7	2	0	0	0	0.027866	1	5392	5392		40.778	7.2626	1	142740			74611	5271	52049	52135	81971	81971					0.03396455449274072
SNREEEMGV	9	Unmodified	_SNREEEMGV_					0	0	0			REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7439575195312	2	525.729663	1049.44477	-0.28444	-0.00014954	-0.54309	-0.00028552	-0.82754	-0.00043506	525.7296884473407	40.04	0.19384	39.815	39.734	39.928	-0.225					7	4	2	0	0	0	0.024535	1	3432	3432		12.207	0	1	38811	+		74612	19357	52050	52136	81972	81972					-0.07797148952886346
SNRGHSVLV	9	Unmodified	_SNRGHSVLV_					0	0	0		ENSG00000178965|ENST00000326665|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	ENSG00000178965|ENST00000326665|ERICH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7668151855469	2	484.76724	967.519927	-0.68566	-0.00033238	0.20063	9.7257E-05	-0.48503	-0.00023513	484.76733828491444	35.109	1.0982	35.109	34.826	35.924	0					58	28	3	0	0	0	0.39228	1	2670	2670		66.429	0.6261	1	17271000			74613	8850	52051	52137	81973	81973					0.034868213605250276
SNRLRLALVR	10	Unmodified	_SNRLRLALVR_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	599.3790283203125	2	599.380563	1196.74657	-0.68609	-0.00041123	-0.25526	-0.000153	-0.94135	-0.00056423	599.3802338408786	102.36	0.61472	102.35	102.06	102.68	-0.0054474					45	13	5	0	0	0	1.0719	1	13025	13025		36.447	2.2742	1	1236000			74614	7118	52052	52138	81974	81974					0.1560698491941821
SNRLWMKF	8	Unmodified	_SNRLWMKF_					0	0	0		ENSG00000095587|ENST00000357947|TLL2	ENSG00000095587|ENST00000357947|TLL2	ENSG00000095587|ENST00000357947|TLL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.298095703125	2	541.284211	1080.55387	-1.8347	-0.00099309	4.1069	0.002223	2.2722	0.0012299	541.2862969362371	22.178	0.81419	22.252	21.931	22.745	0.073954					37	16	3	0	0	0	0.027866	1	686	686		13.775	0	1	361980			74615	2031	52053	52139	81975	81975					0.016815265279092273
SNRPRADL	8	Unmodified	_SNRPRADL_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7869567871094	2	464.75159	927.488627	0.90298	0.00041966	-3.5326	-0.0016418	-2.6296	-0.0012221	464.7478489620104	71.314	0.19113	71.025	70.922	71.113	-0.28858					5	4	2	0	0	0	0.027866	1	8596	8596		23.042	0	1	40352	+		74616	22745	52054	52140	81976	81976					0.021982483264082475
SNRRVLLD	8	Unmodified	_SNRRVLLD_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3087158203125	2	486.78289	971.551228	-0.95187	-0.00046335	1.1506	0.00056011	0.19878	9.6762E-05	486.78325694028956	20.31	0.39044	20.31	20.078	20.468	0					11	7	2	0	0	0	0.027866	1	534	534		49.442	20.292	1	25573			74617	10923	52055	52141	81977	81977					0.06431394394610379
SNSDHECHTL	10	Unmodified	_SNSDHECHTL_					0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.727783203125	2	571.730194	1141.44584	-0.5502	-0.00031456	-3.2648	-0.0018666	-3.815	-0.0021811	571.7281939770114	51.438	1.2834	51.438	51.067	52.351	0					101	35	5	0	0	0	1.0816	1	5438	5438		35.152	2.3396	1	5381000	+		74618	21642	52056	52142	81978	81978					-0.1192293458398126
SNSELLLTL	9	Unmodified	_SNSELLLTL_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.29827880859375	2	495.279315	988.544076	-0.052758	-2.613E-05	-2.7288	-0.0013515	-2.7816	-0.0013777	495.27798446483314	54.598	0.47974	54.448	54.302	54.782	-0.15036					21	13	2	0	0	0	0.024323	1	6009	6009		35.618	7.736	1	781040	+		74619	20429	52057	52143	81979	81979					0.04934617003527819
SNSMIYKN	8	Unmodified	_SNSMIYKN_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7521667480469	2	478.728935	955.443317	0.18194	8.7102E-05	2.5224	0.0012076	2.7044	0.0012947	478.73023442529677	33.644	0.70768	33.644	33.421	34.129	0					33	18	3	0	0	0	0.027866	1	2413	2413		40.778	7.9657	1	325410	+		74620	24298	52058	52144	81980	81980					-0.03618738250986553
SNSPLVRR	8	Unmodified	_SNSPLVRR_					0	0	0			REV__ENST00000431992.5_2_1:33794701-33797944:-|nuORF	REV__ENST00000431992.5_2_1:33794701-33797944:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2868957519531	2	464.769783	927.525013	-0.77126	-0.00035846	4.1808	0.0019431	3.4095	0.0015846	464.7715669173861	75.907	0.8396	75.907	75.551	76.391	0					41	21	3	0	0	0	0.027866	1	9301	9301		42.396	20.694	1	1459500	+		74621	32373	52059	52145	81981	81981					0.05835125223143223
SNSSLGFLTI	10	Unmodified	_SNSSLGFLTI_					0	0	0			REV__ENSG00000110090|ENST00000265641|CPT1A	REV__ENSG00000110090|ENST00000265641|CPT1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7435913085938	2	519.776939	1037.53933	-0.58426	-0.00030369	2.2983	0.0011946	1.714	0.00089089	519.7778441141297	38.186	0.77433	37.965	37.724	38.498	-0.22149					36	21	3	0	0	0	0.03519	1	3099	3099		24.519	10.382	1	2724200	+		74622	21839	52060	52146	81982	81982					0.022057328607616
SNTKLVCAVG	10	Unmodified	_SNTKLVCAVG_					0	0	0		nc|ENSG00000109670|Q969H0-4|FBXW7;nc|ENSG00000109670|Q969H0-2|FBXW7;ENSG00000109670|ENST00000281708|FBXW7	nc|ENSG00000109670|Q969H0-4|FBXW7	nc|ENSG00000109670|Q969H0-4|FBXW7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25909423828125	2	496.265684	990.516816	-0.045806	-2.2732E-05	-2.3267	-0.0011547	-2.3725	-0.0011774	496.2652919951511	20.899	0.28855	20.728	20.587	20.876	-0.17158					8	5	2	0	0	0	0.03519	1	592	592		40.778	1.5253	1	14704			74623	2987	52061	52147	81983	81983					0.02117810191487024
SNTKLVCAVG	10	Unmodified	_SNTKLVCAVG_					0	0	0		nc|ENSG00000109670|Q969H0-4|FBXW7;nc|ENSG00000109670|Q969H0-2|FBXW7;ENSG00000109670|ENST00000281708|FBXW7	nc|ENSG00000109670|Q969H0-4|FBXW7	nc|ENSG00000109670|Q969H0-4|FBXW7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.265684	990.516816	0.42825	0.00021253	-1.4106	-0.00070004	-0.98236	-0.00048751	496.26538264541347	21.068	0.294	20.872	20.681	20.975	-0.19577	0.07217	0.00029324	NaN	40.778	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12693			74624	2987	52061	52147							0.02117810191487024
SNTLIKILY	9	Unmodified	_SNTLIKILY_					0	0	0			REV__nc|ENSG00000198791|Q9UIV1-2|CNOT7	REV__nc|ENSG00000198791|Q9UIV1-2|CNOT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7958374023438	2	532.82115	1063.62775	-0.76444	-0.00040731	-1.9464	-0.0010371	-2.7108	-0.0014444	532.819907166321	35.27	0.78999	35.314	34.868	35.658	0.04406					45	20	3	0	0	0	0.024477	1	2693	2693		27.882	12.246	1	419540	+		74625	28477	52062	52148	81984	81984					0.0984777317123644
SNTLNYTIA	9	Unmodified	_SNTLNYTIA_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.77166748046875	2	498.753464	995.492375	-1.3737	-0.00068514	3.6612	0.0018261	2.2875	0.0011409	498.75592178591	28.63	0.45911	28.385	28.162	28.621	-0.24524					14	10	2	0	0	0	0.024527	1	1702	1702		24.519	10.382	1	172220			74626	10148	52063	52149	81985	81985					-0.005551266903921714
SNTNGYVSTI	10	Unmodified	_SNTNGYVSTI_					0	0	0			REV__ENSG00000174059|ENST00000310833|CD34	REV__ENSG00000174059|ENST00000310833|CD34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2387084960938	2	528.253828	1054.4931	0.065559	3.4632E-05	3.0824	0.0016283	3.148	0.0016629	528.2558114550354	76.87	0.38472	76.619	76.356	76.741	-0.25162					9	8	2	0	0	0	0.03519	1	9129	9129		70.816	30.244	1	38129	+		74627	26831	52064	52150	81986	81986					-0.03196332041329697
SNTNGYVSTI	10	Unmodified	_SNTNGYVSTI_					0	0	0			REV__ENSG00000174059|ENST00000310833|CD34	REV__ENSG00000174059|ENST00000310833|CD34	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.253828	1054.4931	-0.6027	-0.00031838	3.9186	0.00207	3.3159	0.0017516	528.2569106626372	76.631	0.24689	76.631	76.431	76.678	0	0.0063615	0.00037362	NaN	70.816	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52195	+		74628	26831	52064	52150							-0.03196332041329697
SNTNKRKAR	9	Unmodified	_SNTNKRKAR_					0	0	0		ENST00000413670.2_1_1:98510427-98510946:-|nuORF;ENST00000602984.1_1_1:98510427-98511708:-|nuORF	ENST00000413670.2_1_1:98510427-98510946:-|nuORF	ENST00000413670.2_1_1:98510427-98510946:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.29541015625	2	537.809971	1073.60539	-2.2586	-0.0012147	4.4741	0.0024062	2.2155	0.0011915	537.8122742717633	38.421	0.9265	38.449	37.884	38.81	0.027279					63	25	5	0	0	0	0.024466	1	3098	3098		18.262	0	1	1619100			74629	13848	52065	52151	81987	81987					0.07152986546179818
SNTYSQVL	8	Unmodified	_SNTYSQVL_					0	0	0		nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31;ENST00000476399.5_1_7:23776595-23810746:+|nuORF	nc|ENSG00000196335|Q9BXU1-3|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.2792663574219	2	456.227082	910.439611	-0.20958	-9.5615E-05	1.0866	0.00049572	0.877	0.00040011	456.2272593264275	24.828	0.52444	24.613	24.418	24.943	-0.2151					18	11	2	0	0	0	0.027866	1	1105	1105		31.955	0	1	82849			74630	9850	52066	52152	81988	81988					-0.019190847531831423
SNVDRRQA	8	Unmodified	_SNVDRRQA_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.27215576171875	2	473.246672	944.478791	-0.11734	-5.5532E-05	2.3231	0.0010994	2.2057	0.0010438	473.2460828698689	48.35	0.20321	48.197	48.091	48.295	-0.15301					6	5	2	0	0	0	0.027866	1	4915	4915		31.955	11.473	1	109100			74631	3048	52067	52153	81989	81989					0.00433060321040557
SNVELIAKN	9	Unmodified	_SNVELIAKN_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.72900390625	2	494.277106	986.53966	-0.13287	-6.5675E-05	3.1414	0.0015527	3.0085	0.0014871	494.27848618230416	62.875	0.80228	62.617	62.473	63.276	-0.25824					31	22	2	0	0	0	0.024511	1	7165	7165		25.574	6.4705	1	672180			74632	7217	52068	52154	81990	81990					0.04585152580625618
SNVELIAKN	9	Unmodified	_SNVELIAKN_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.277106	986.53966	-0.61469	-0.00030383	2.4679	0.0012198	1.8533	0.00091602	494.27858664185874	62.445	0.56106	62.445	62.25	62.811	0	-0.076837	-0.00086882	NaN	19.104	44	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1343800			74633	7217	52068	52154							0.04585152580625618
SNVELIAKN	9	Unmodified	_SNVELIAKN_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.277106	986.53966	-1.1274	-0.00055726	3.8857	0.0019206	2.7583	0.0013634	494.27884371733495	62.738	0.5139	62.499	62.264	62.778	-0.23926	-0.023226	0.00053275	NaN	19.104	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446300			74634	7217	52068	52154							0.04585152580625618
SNVFMSCLF	9	Unmodified	_SNVFMSCLF_					0	0	0			REV__ENSG00000115368|ENST00000314761|WDR75	REV__ENSG00000115368|ENST00000314761|WDR75	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2510375976562	2	524.235538	1046.45652	-0.43001	-0.00022542	-1.8497	-0.00096969	-2.2797	-0.0011951	524.7353450209067	35.216	0.19138	35.004	34.886	35.077	-0.21246					10	4	3	0	0	0	0.024344	1	2637	2637		45.972	20.522	1	47781	+		74635	22199	52069	52155	81991	81991					-0.06484623463234129
SNVHHRVR	8	Unmodified	_SNVHHRVR_					0	0	0			REV__ENST00000561895.1_1_16:88718935-88721317:-|nuORF	REV__ENST00000561895.1_1_16:88718935-88721317:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7375793457031	2	502.778474	1003.54239	0.53167	0.00026731	-2.2197	-0.001116	-1.6881	-0.00084872	502.77709342954336	36.113	0.16756	35.915	35.776	35.943	-0.19829					6	4	2	0	0	0	0.027866	1	2777	2777		16.473	4.9621	1	198620	+		74636	35183	52070	52156	81992	81992					0.040764655488032986
SNVIKHFVN	9	Unmodified	_SNVIKHFVN_					0	0	0		ENST00000538571.6_1_14:58909433-59003756:+|nuORF;nc|ENSG00000100578|Q9BVV6-2|KIAA0586;nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6|KIAA0586;ENSG00000100578|ENST00000652326|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	ENST00000538571.6_1_14:58909433-59003756:+|nuORF	ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	529.293091	1056.57163	-0.81687	-0.00043236	0.51696	0.00027362	-0.29991	-0.00015874	529.2930586979999	40.135	0.62025	40.158	39.942	40.562	0.023006					28	16	2	0	0	0	0.024292	1	3424	3424		58.782	24.609	1	662720			74637	2221	52071	52157	81993	81993					0.04560565054430299
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3694458007812	2	633.369861	1264.72517	-0.31781	-0.00020129	-0.76957	-0.00048742	-1.0874	-0.00068872	633.3692884562681	93.071	1.2951	93.079	92.225	93.52	0.0077286					82	30	4	0	0	0	0.95664	1	11729	11729		46.457	5.6786	1	1519500	+		74638	24799	52072	52158	81994	81994					0.10339555100085818
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3695068359375	2	633.369861	1264.72517	-2.2268	-0.0014104	1.1831	0.00074936	-1.0437	-0.00066102	633.3704900800258	93.216	1.2663	93.076	92.131	93.397	-0.13996					96	29	4	0	0	0	0.97926	2	11435	11435;11467		41.427	7.2287	1	1660400	+		74639	24799	52072	52158	81995;81996	81995					0.10339555100085818
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3722534179688	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.99129	1	12021	12021		38.754	3.1353	1	9528000	+		74640	24799	52072	52158	81997	81997					0.10339555100085818
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3696899414062	2	633.369861	1264.72517	-0.22417	-0.00014198	-1.0302	-0.00065251	-1.2544	-0.00079449	633.3690599981089	93.272	1.3142	93.128	92.169	93.483	-0.1441					76	30	4	0	0	0	1.013	1	11479	11479		33.922	1.1092	1	1667300	+		74641	24799	52072	52158	81998	81998					0.10339555100085818
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3682250976562	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	0.97926	1	11738	11738		41.427	9.4718	1	9845500	+		74642	24799	52072	52158	81999	81999					0.10339555100085818
SNVLRCGRH	9	Unmodified	_SNVLRCGRH_					0	0	0		ENST00000509500.1_1_4:190962567-190962723:+|nuORF	ENST00000509500.1_1_4:190962567-190962723:+|nuORF	ENST00000509500.1_1_4:190962567-190962723:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7694702148438	2	521.272167	1040.52978	-0.28615	-0.00014916	1.0451	0.00054478	0.75895	0.00039562	521.2725107898588	55.366	0.81217	55.216	54.71	55.523	-0.15068					20	14	2	0	0	0	0.024354	1	6127	6127		38.806	3.1879	1	439530			74643	15804	52073	52159	82000	82000					0.011136860942542626
SNVLTGPAL	9	Unmodified	_SNVLTGPAL_					0	0	0			REV__ENST00000291700.8_1_21:48019006-48019054:-|nuORF	REV__ENST00000291700.8_1_21:48019006-48019054:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.24761962890625	2	436.247818	870.481082	-0.80408	-0.00035078	-0.052383	-2.2852E-05	-0.85647	-0.00037363	436.2477168788436	35.189	2.4673	35.168	34.244	36.711	-0.021763					144	65	5	0	0	0	0.33245	1	2632	2632		71.296	7.9894	1	12541000	+		74644	29946	52074	52160	82001	82001					0.04066096006135922
SNVNFDLLA	9	Unmodified	_SNVNFDLLA_					0	0	0			REV__nc|ENSG00000073921|Q13492-4|PICALM	REV__nc|ENSG00000073921|Q13492-4|PICALM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7979736328125	2	496.756007	991.497461	-0.0021859	-1.0858E-06	0.68497	0.00034026	0.68278	0.00033918	496.7557766031126	34.252	0.38485	34.248	34.029	34.414	-0.0045624					15	9	2	0	0	0	0.024535	1	2494	2494		7.1934	0	1	122050	+		74645	20515	52075	52161	82002	82002					0.0013717717223471482
SNVNFDLLA	9	Unmodified	_SNVNFDLLA_					0	0	0			REV__nc|ENSG00000073921|Q13492-4|PICALM	REV__nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.756007	991.497461	-0.042148	-2.0937E-05	1.0957	0.00054429	1.0535	0.00052335	496.7561779764026	34.426	0.45914	34.426	34.209	34.668	0	0.088994	0.00022477	NaN	12.207	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128260	+		74646	20515	52075	52161							0.0013717717223471482
SNVPILIL	8	Unmodified	_SNVPILIL_					0	0	0		ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A;SAR1A|p.K135N|1|0.13|ENSG00000079332|chr10:70153913-70153913|T/G|missense_variant	ENSG00000079332|ENST00000373241|SAR1A	ENSG00000079332|ENST00000373241|SAR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.756103515625	2	434.778754	867.542954	0.1102	4.7912E-05	2.9911	0.0013005	3.1013	0.0013484	434.7799272866559	63.268	1.6383	63.021	62.607	64.246	-0.2466					75	43	2	0	0	0	0.027866	1	7485	7485		28.254	7.7724	1	164370			74647	1659	52076	52162	82003	82003					0.10388447425293634
SNVQICHR	8	Unmodified	_SNVQICHR_					0	0	0			REV__ENST00000264852.8_2_3:113346645-113347029:+|nuORF	REV__ENST00000264852.8_2_3:113346645-113347029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.9744873046875	2	478.740168	955.465783	-0.93943	-0.00044974	-3.3319	-0.0015951	-4.2713	-0.0020448	478.7385509261765	44.499	0.67624	44.354	43.921	44.597	-0.14471					31	19	2	0	0	0	0.027866	1	4175	4175		35.618	6.4687	1	371390	+		74648	29729	52077	52163	82004	82004					-0.013730940627056043
SNVRPTRF	8	Unmodified	_SNVRPTRF_					0	0	0			REV__ENST00000379454.8_3_8:62415797-62415908:-|nuORF	REV__ENST00000379454.8_3_8:62415797-62415908:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.764404296875	2	488.769783	975.525013	-0.10644	-5.2023E-05	-1.5404	-0.00075292	-1.6469	-0.00080495	488.76881294126105	40.635	0.36016	40.41	40.187	40.547	-0.225					14	9	2	0	0	0	0.027866	1	3545	3545		24.519	0	1	450290	+		74649	31434	52078	52164	82005	82005					0.03627125223135863
SNVVKESAR	9	Unmodified	_SNVVKESAR_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2977294921875	2	495.272355	988.530158	0.83815	0.00041511	3.0124	0.001492	3.8506	0.0019071	495.273741251166	55.177	0.81359	55.177	54.831	55.645	0					40	22	2	0	0	0	0.024495	1	6022	6022		19.997	0	1	1865100			74650	4218	52079	52165	82006	82006					0.0354338429509653
SNWPSVVKL	9	Unmodified	_SNWPSVVKL_					0	0	0			REV__nc|ENSG00000168291|P11177-3|PDHB	REV__nc|ENSG00000168291|P11177-3|PDHB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.293701171875	2	515.290017	1028.56548	-0.32891	-0.00016949	3.3635	0.0017332	3.0346	0.0015637	515.2915611201685	40.188	0.74268	40.076	39.64	40.382	-0.11223					52	19	4	0	0	0	0.2101	1	3491	3491		87.696	5.4559	1	2460500	+		74651	26245	52080	52166	82007	82007					0.05234046822897653
SNWRSQNML	9	Unmodified	_SNWRSQNML_					0	0	0			REV__ENSG00000173163|ENST00000311832|COMMD1	REV__ENSG00000173163|ENST00000311832|COMMD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.7947387695312	2	568.26929	1134.52403	-0.18388	-0.00010449	-0.66132	-0.00037581	-0.8452	-0.0004803	568.7701419822669	72.044	0.77482	72.044	71.718	72.493	0					43	19	3	0	0	0	0.024456	1	8819	8819		35.152	0	1	600860	+		74652	26746	52081	52167	82008	82008					-0.037854572080732396
SNWSQSPPN	9	Unmodified	_SNWSQSPPN_					0	0	0			REV__ENST00000361936.9_1_1:150975438-150978904:-|nuORF	REV__ENST00000361936.9_1_1:150975438-150978904:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7818603515625	2	508.725238	1015.43592	-0.13449	-6.8419E-05	0.059325	3.018E-05	-0.075167	-3.8239E-05	508.7251756956807	41.553	0.60627	41.417	41.099	41.705	-0.13553					35	15	3	0	0	0	0.024527	1	3726	3726		31.53	15.057	1	753170	+		74653	30956	52082	52168	82009	82009					-0.07117754527041598
SNWWSFFQFVS	11	Unmodified	_SNWWSFFQFVS_					0	0	0			REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.25946044921875	3	478.887422	1433.64044	-0.78688	-0.00037682	0.81962	0.0003925	0.03274	1.5679E-05	478.88765341422607	25.124	0.261	25.09	24.86	25.121	-0.034395					7	5	2	0	0	0	0.024846	1	1144	1144		11.932	0	1	27747	+		74654	20246	52083	52169	82010	82010					-0.05903815436545301
SNYEQESK	8	Unmodified	_SNYEQESK_					0	0	0		nc|ENSG00000198822|Q14832-2|GRM3;ENSG00000198822|ENST00000361669|GRM3	nc|ENSG00000198822|Q14832-2|GRM3	nc|ENSG00000198822|Q14832-2|GRM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2871398925781	2	492.717079	983.419604	0.45735	0.00022534	0.26395	0.00013005	0.7213	0.0003554	492.7171001577083	67.69	0.53589	67.69	67.49	68.026	0					21	13	2	0	0	0	0.027866	1	8077	8077		14.865	1.4108	1	175540			74655	10213	52084	52170	82011	82011					-0.07276880483800596
SNYVDKSLGLA	11	Unmodified	_SNYVDKSLGLA_					0	0	0			REV__nc|ENSG00000112655|Q13308-2|PTK7	REV__nc|ENSG00000112655|Q13308-2|PTK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.24853515625	2	583.806228	1165.5979	-0.51709	-0.00030188	-1.9319	-0.0011278	-2.449	-0.0014297	583.8053266301749	79.984	0.75369	79.765	79.244	79.997	-0.21923					28	17	2	0	0	0	0.024756	1	9605	9605		36.447	0	1	135030	+		74656	36574	52085	52171	82012	82012					0.02172789435235245
SPAAAQKAV	9	Unmodified	_SPAAAQKAV_					0	0	0		ENST00000492283.1_1_2:161159304-161174707:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ENST00000497205.1_1_3:29476395-29781369:+|nuORF;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.7400817871094	2	421.74016	841.465767	-0.42766	-0.00018036	0.80619	0.00034	0.37853	0.00015964	421.7403779753754	22.871	0.59778	22.871	22.525	23.123	0					28	12	3	0	0	0	0.26966	1	847	847		79.713	18.741	1	759760			74657	6336	52086	52172	82013	82013					0.03869229208942215
SPAAAQKAV	9	Unmodified	_SPAAAQKAV_					0	0	0		ENST00000492283.1_1_2:161159304-161174707:-|nuORF;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ITGB6-RBMS1|3|fusion;ITGB6-RBMS1|2|fusion;ENST00000497205.1_1_3:29476395-29781369:+|nuORF;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	ENST00000492283.1_1_2:161159304-161174707:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	421.74016	841.465767	-0.32137	-0.00013553	0.76618	0.00032313	0.44482	0.0001876	421.7403689261028	22.913	0.59113	22.852	22.52	23.111	-0.060862	-0.009198	-2.3182E-05	NaN	79.713	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	721810			74658	6336	52086	52172							0.03869229208942215
SPAAARWR	8	Unmodified	_SPAAARWR_					0	0	0		ENST00000345317.6_1_7:26894494-26904350:-|nuORF	ENST00000345317.6_1_7:26894494-26904350:-|nuORF	ENST00000345317.6_1_7:26894494-26904350:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.7508544921875	2	457.751393	913.488233	-0.80997	-0.00037076	-0.0093552	-4.2823E-06	-0.81932	-0.00037505	457.7510301746539	30.5	1.2041	30.5	30.096	31.3	0					73	28	5	0	0	0	0.59392	1	1969	1969		76.847	1.8033	1	3767600			74659	12565	52087	52173	82014	82014					0.028028733972178088
SPAAEKAQL	9	Unmodified	_SPAAEKAQL_					0	0	0		nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	457.750724	913.486896	-0.36799	-0.00016845	0.688	0.00031493	0.32001	0.00014649	457.75086296943664	30.444	1.0849	30.453	30.082	31.167	0.0086708					69	25	5	0	0	0	0.17845	2	1935	1935;1947		93.143	5.2414	1	3511700			74660	3899	52088	52174	82015;82016	82015					0.026691945178072274
SPAAEKAQL	9	Unmodified	_SPAAEKAQL_					0	0	0		nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.7509460449219	2	457.750724	913.486896	-0.62862	-0.00028775	-2.3875	-0.0010929	-3.0161	-0.0013806	457.7510047365146	30.175	1.1217	30.249	29.838	30.96	0.074316					74	26	4	0	0	0	0.077175	2	1837	1837;1846		118.74	20.114	1	3016100			74661	3899	52088	52174	82017;82018	82017					0.026691945178072274
SPAALHNGLL	10	Unmodified	_SPAALHNGLL_					0	0	0		ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.8218688964844	2	496.779816	991.545079	0.43392	0.00021556	-0.96421	-0.000479	-0.5303	-0.00026344	496.7791340251961	42.914	1.266	42.944	42.361	43.627	0.029285					59	34	2	0	0	0	0.03519	1	3841	3841		45.972	0	1	2173800			74662	3240	52089	52175	82019	82019					0.04896876163093111
SPAAVSSVTF	10	Unmodified	_SPAAVSSVTF_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2684020996094	2	483.250557	964.486562	0.29715	0.0001436	-2.3862	-0.0011532	-2.0891	-0.0010096	483.25007896773235	46.398	0.47394	46.301	45.999	46.473	-0.096649					18	12	2	0	0	0	0.03519	1	4475	4475		51.335	33.073	1	130120	+		74663	22225	52090	52176	82020	82020					0.0028977479796594707
SPADHRGYASL	11	Unmodified	_SPADHRGYASL_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	587.2860717773438	2	587.285994	1172.55744	-1.0449	-0.00061363	0.93574	0.00054955	-0.10911	-6.4077E-05	587.2864154544867	34.139	0.82207	34.134	33.829	34.651	-0.0045624					62	20	4	0	0	0	0.30495	1	2519	2519		89.029	37.836	1	1787400			74664	4073	52091	52177	82021	82021					-0.021941321645272183
SPADHRGYASL	11	Unmodified	_SPADHRGYASL_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	587.2864379882812	2	587.285994	1172.55744	0.072584	4.2627E-05	-0.15677	-9.2066E-05	-0.084182	-4.9439E-05	587.2857864213225	34.141	0.79607	34.191	33.844	34.64	0.050255					55	19	4	0	0	0	0.12521	1	2480	2480		106.88	43.346	1	1592200			74665	4073	52091	52177	82022	82022					-0.021941321645272183
SPADHRGYASL	11	Unmodified	_SPADHRGYASL_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	587.285994	1172.55744	-1.6387	-0.00096241	1.6314	0.0009581	-0.0073386	-4.3098E-06	587.2868392962898	34.39	0.77706	34.39	34.09	34.867	0	0.1516	0.00088966	NaN	106.88	62	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1944600			74666	4073	52091	52177							-0.021941321645272183
SPADRLAR	8	Unmodified	_SPADRLAR_					0	0	0			REV__ENST00000234739.7_1_1:147078641-147083592:+|nuORF	REV__ENST00000234739.7_1_1:147078641-147083592:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2590026855469	2	443.248683	884.482814	-0.20997	-9.3067E-05	0.92208	0.00040871	0.71212	0.00031564	443.2480254553066	27.015	0.32823	27.002	26.704	27.032	-0.012983					9	7	2	0	0	0	0.027866	1	1419	1419		14.865	0	1	60876	+		74667	29425	52092	52178	82023	82023					0.03595149814736942
SPAEKGAPEP	10	Unmodified	_SPAEKGAPEP_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2668151855469	2	491.745639	981.476725	-0.76044	-0.00037394	1.1801	0.0005803	0.41964	0.00020636	491.74707667344376	28.53	0.42138	28.53	28.274	28.696	0					19	9	3	0	0	0	0.03519	1	1686	1686		53.089	15.277	1	55512	+		74668	25515	52093	52179	82024	82024					-0.014754132074244808
SPAELRQVL	9	Unmodified	_SPAELRQVL_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.7922668457031	2	506.792924	1011.57129	-0.35557	-0.0001802	-1.1749	-0.00059544	-1.5305	-0.00077565	506.79245433045855	44.155	1.3845	44.192	43.888	45.272	0.036903					127	39	6	0	0	0	0.27161	1	4187	4187		79.451	9.8234	1	117970000			74669	10581	52094	52180	82025	82025					0.06597145334569632
SPAERFRA	8	Unmodified	_SPAERFRA_					0	0	0		ENST00000379287.3_1_6:13487499-13487736:-|nuORF	ENST00000379287.3_1_6:13487499-13487736:-|nuORF	ENST00000379287.3_1_6:13487499-13487736:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7901306152344	2	467.248683	932.482814	-0.20509	-9.5827E-05	0.36426	0.0001702	0.15918	7.4374E-05	467.24900239372624	27.278	0.21362	27.265	27.101	27.314	-0.012983					8	5	2	0	0	0	0.027866	1	1473	1473		37.159	0	1	29487			74670	13260	52095	52181	82026	82026					0.013871498147523198
SPAFDNLYY	9	Unmodified	_SPAFDNLYY_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.24609375	2	545.248015	1088.48148	-0.34373	-0.00018742	-3.9022	-0.0021276	-4.2459	-0.0023151	545.2457701859922	40.499	1.0425	40.274	40.004	41.047	-0.225					64	27	4	0	0	0	0.62163	1	3496	3496		51.335	5.3835	1	4861900			74671	5518	52096	52182	82027	82027					-0.05922529064673654
SPAFPNIL	8	Unmodified	_SPAFPNIL_					0	0	0			REV__nc|ENSG00000100150|O75140-5|DEPDC5;REV__nc|ENSG00000100150|O75140-6|DEPDC5	REV__nc|ENSG00000100150|O75140-6|DEPDC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.7376708984375	2	429.739628	857.464704	-0.65623	-0.00028201	-3.5538	-0.0015272	-4.21	-0.0018092	429.7382071974735	24.763	1.4821	24.763	24.385	25.867	0					70	34	5	0	0	0	0.30538	1	1127	1127		110.34	7.5639	1	5727100	+		74672	21055;36515	52097	52183	82028	82028					0.030270148400518337
SPAFSTRVL	9	Unmodified	_SPAFSTRVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2745056152344	2	489.274367	976.53418	-0.31195	-0.00015263	-0.88458	-0.0004328	-1.1965	-0.00058543	489.27429819538844	52.767	1.3041	52.767	52.351	53.655	0					101	34	6	0	0	0	0.077175	4	5685	5650;5660;5672;5685		118.74	39.03	1	7872800			74673	9965	52098	52184	82029;82030;82031;82032	82032					0.044974737888196614
SPAFSTRVL	9	Unmodified	_SPAFSTRVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2739562988281	2	489.274367	976.53418	0.027882	1.3642E-05	-0.30913	-0.00015125	-0.28125	-0.00013761	489.2741386559837	52.811	1.0572	52.664	52.326	53.383	-0.14723					58	27	3	0	0	0	0.1158	4	5653	5633;5644;5653;5665		107.01	38.221	1	6888100			74674	9965	52098	52184	82033;82034;82035;82036	82035					0.044974737888196614
SPAFSTRVL	9	Unmodified	_SPAFSTRVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2739562988281	2	489.274367	976.53418	-0.12667	-6.1977E-05	-1.2617	-0.00061732	-1.3884	-0.0006793	489.27423091319594	52.592	1.3448	52.684	52.28	53.625	0.091942					137	35	7	0	0	0	0.094442	4	5584	5550;5561;5572;5584		112.41	42.783	1	9570800			74675	9965	52098	52184	82037;82038;82039;82040	82040					0.044974737888196614
SPAFWFLW	8	Unmodified	_SPAFWFLW_					0	0	0		ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.8219604492188	2	527.263271	1052.51199	-1.3747	-0.0007248	2.7752	0.0014633	1.4006	0.00073846	527.2644965710945	32.957	0.41965	32.957	32.715	33.135	0					27	10	3	0	0	0	0.027866	1	2319	2319		19.36	0	1	330230			74676	10950	52099	52185	82041	82041					-0.012167058889644977
SPAGHLAR	8	Unmodified	_SPAGHLAR_					0	0	0		ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF	ENSG00000008710|ENST00000262304|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	ENSG00000008710|ENST00000262304|PKD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	404.7251892089844	2	404.724844	807.435135	0.55705	0.00022545	0.27799	0.00011251	0.83504	0.00033796	404.72475855754124	20.105	0.68472	20.105	19.831	20.516	0					32	13	3	0	0	0	0.87148	1	501	501		53.351	5.6941	1	239820			74677	850;16288	52100	52186	82042	82042					0.023714956145568067
SPAGKTNAL	9	Unmodified	_SPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.73797607421875	2	429.737617	857.460681	-0.65623	-0.00028201	1.1267	0.00048417	0.47043	0.00020216	429.7382071974735	24.763	1.4821	24.763	24.385	25.867	0					70	34	5	0	0	0	0.027092	3	1091	1091;1103;1115		143.89	24.67	1	5727100			74678	4658	52101	52187	82043;82044;82045	82043					0.026249253463333844
SPAGKTNAL	9	Unmodified	_SPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.73773193359375	2	429.737617	857.460681	-1.1294	-0.00048534	1.1631	0.00049985	0.033757	1.4507E-05	429.73813615610237	24.787	1.0706	24.74	24.308	25.379	-0.047148					59	24	5	0	0	0	0.041068	3	1087	1087;1099;1111		132.76	22.193	1	5544000			74679	4658	52101	52187	82046;82047;82048	82046					0.026249253463333844
SPAGLSGQVGL	11	Unmodified	_SPAGLSGQVGL_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.26971435546875	2	493.269281	984.52401	0.70266	0.0003466	-0.36919	-0.00018211	0.33347	0.00016449	493.2688690334511	36.005	0.75853	35.806	35.575	36.334	-0.19829					52	20	4	0	0	0	1.0429	1	2773	2773		27.047	0.3544	1	1742500	+		74680	27604	52102	52188	82049	82049					0.031128660635772576
SPAGLSGQVGL	11	Unmodified	_SPAGLSGQVGL_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.269281	984.52401	-0.99289	-0.00048976	1.1303	0.00055754	0.13741	6.7778E-05	493.2696553920316	36.064	0.94962	35.859	35.616	36.566	-0.20518	0.012295	0.00096778	NaN	27.047	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1721900	+		74681	27604	52102	52188							0.031128660635772576
SPAGLSGQVGL	11	Unmodified	_SPAGLSGQVGL_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.269281	984.52401	0.1178	5.8107E-05	0.031383	1.548E-05	0.14918	7.3587E-05	493.26915972649107	36.091	0.99597	35.875	35.614	36.61	-0.21661	0.027949	-0.00011634	NaN	27.047	52	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1733500	+		74682	27604	52102	52188							0.031128660635772576
SPAGLSGQVGL	11	Unmodified	_SPAGLSGQVGL_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	493.269281	984.52401	0.70266	0.0003466	-0.36919	-0.00018211	0.33347	0.00016449	493.2688690334511	36.005	0.75853	35.806	35.575	36.334	-0.19829	-0.040244	-0.00051152	NaN	27.047	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1742500	+		74683	27604	52102	52188							0.031128660635772576
SPAGQRTPGGS	11	Unmodified	_SPAGQRTPGGS_					0	0	0		ENSG00000168334|ENST00000340369|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	ENSG00000168334|ENST00000340369|XIRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8125	2	507.751787	1013.48902	-0.53583	-0.00027207	4.4137	0.0022411	3.8779	0.001969	507.75385004633785	45.284	0.61797	45.073	44.831	45.449	-0.21109					28	17	2	0	0	0	0.02474	1	4290	4290		40.058	25.394	1	1257500			74684	7812	52103	52189	82050	82050					-0.017183767443725628
SPAGTRVASLS	11	Unmodified	_SPAGTRVASLS_					0	0	0		ENST00000273153.9_1_3:39188169-39195034:-|nuORF	ENST00000273153.9_1_3:39188169-39195034:-|nuORF	ENST00000273153.9_1_3:39188169-39195034:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2841186523438	2	523.285463	1044.55637	-2.0023	-0.0010478	1.5694	0.00082123	-0.43296	-0.00022656	523.2863084544947	37.865	0.56648	37.865	37.632	38.199	0					42	16	3	0	0	0	0.87596	1	3132	3132		53.089	0	1	8389000			74685	11661	52104	52190	82051	82051					0.03587653466570373
SPAHIGKTAG	10	Unmodified	_SPAHIGKTAG_					0	0	0		ENST00000378763.1_1_4:190947571-190948205:-|nuORF;ENST00000504750.5_1_4:190947571-190948256:-|nuORF	ENST00000378763.1_1_4:190947571-190948205:-|nuORF	ENST00000378763.1_1_4:190947571-190948205:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7665100097656	2	469.756341	937.498129	0.50988	0.00023952	1.7642	0.00082875	2.2741	0.0010683	469.75685730823716	28.464	0.41288	28.545	28.329	28.742	0.080812					12	9	2	0	0	0	0.03519	1	1597	1597		32.751	11.804	1	58683			74686	13250	52105	52191	82052	82052					0.026880166119553905
SPAHPKQTL	9	Unmodified	_SPAHPKQTL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;ENST00000472953.1_1_2:160261332-160289886:-|nuORF	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7724609375	2	489.771991	977.529429	-0.47966	-0.00023492	0.49256	0.00024124	0.012901	6.3186E-06	489.77220086605564	22.003	0.75522	22.003	21.63	22.385	0					34	15	3	0	0	0	0.247	1	728	728		82.75	22.347	1	435400			74687	3993	52106	52192	82053	82053					0.03976589646049433
SPAHPKQTL	9	Unmodified	_SPAHPKQTL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;ENST00000472953.1_1_2:160261332-160289886:-|nuORF	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.780029296875	2	489.771991	977.529429	-0.38915	-0.0001906	0.44245	0.0002167	0.053299	2.6104E-05	489.77214887093265	22.082	0.66566	22.006	21.651	22.317	-0.075296					34	13	3	0	0	0	0.74711	1	733	733		42.864	2.2917	1	416870			74688	3993	52106	52192	82054	82054					0.03976589646049433
SPAHPKQTL	9	Unmodified	_SPAHPKQTL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;ENST00000472953.1_1_2:160261332-160289886:-|nuORF	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.772216796875	2	489.771991	977.529429	-1.2182	-0.00059662	1.2508	0.00061263	0.032685	1.6008E-05	489.7725526750429	21.894	0.67736	21.965	21.637	22.314	0.071487					35	13	4	0	0	0	0.2508	2	673	673;683		82.241	21.269	1	423460			74689	3993	52106	52192	82055;82056	82055					0.03976589646049433
SPAHRAGL	8	Unmodified	_SPAHRAGL_					0	0	0		ENST00000484352.5_1_2:74758702-74760109:+|nuORF;ENSG00000115317|ENST00000258080|HTRA2	ENST00000484352.5_1_2:74758702-74760109:+|nuORF	ENST00000484352.5_1_2:74758702-74760109:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	404.7250061035156	2	404.724844	807.435135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.399	1	20.295	19.795	20.795	-0.10477								0	0	0	0.44619	1	521	521		60.972	13.056	1				74690	3433	52107	52193	82057	82057					0.023714956145568067
SPAIGRTSI	9	Unmodified	_SPAIGRTSI_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.2598571777344	2	451.258717	900.50288	0.51367	0.0002318	-0.90859	-0.00041001	-0.39492	-0.00017821	451.2581928260547	40.088	0.81606	40.088	39.771	40.587	0					58	22	4	0	0	0	0.15388	1	3496	3496		98.582	16.341	1	1748200			74691	7493	52108	52194	82058	82058					0.048649007547169276
SPAIGRTSI	9	Unmodified	_SPAIGRTSI_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.2597351074219	2	451.258717	900.50288	0.012757	5.7566E-06	-0.19989	-9.0201E-05	-0.18713	-8.4445E-05	451.2584855547716	40.156	0.83727	40.044	39.792	40.629	-0.11223					52	22	3	0	0	0	0.12914	1	3494	3494		104.06	16.302	1	1984200			74692	7493	52108	52194	82059	82059					0.048649007547169276
SPAIGRTSI	9	Unmodified	_SPAIGRTSI_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2246398925781	2	451.258717	900.50288	-0.62333	-0.00028128	0.43784	0.00019758	-0.18549	-8.3705E-05	451.2588333817374	40.282	0.70829	40.305	40.088	40.797	0.023006					51	19	4	0	0	0	0.024307	1	3475	3475		54.722	0	1	2220100			74693	7493	52108	52194	82060	82060					0.048649007547169276
SPAIPRGGF	9	Unmodified	_SPAIPRGGF_					0	0	0		ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2246398925781	2	451.248152	900.481751	-0.66805	-0.00030146	1.3257	0.00059824	0.65769	0.00029678	451.24858025330514	40.085	0.78835	40.108	39.705	40.494	0.023006					45	21	3	0	0	0	0.023817	1	3475	3475		60.972	20.399	1	1336400			74694	6107	52109	52195	82061	82061					0.02752935445857929
SPAKNKTTA	9	Unmodified	_SPAKNKTTA_					0	0	0		ENST00000330843.8_1_8:37730107-37730260:-|nuORF	ENST00000330843.8_1_8:37730107-37730260:-|nuORF	ENST00000330843.8_1_8:37730107-37730260:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.25775146484375	2	459.256174	916.497795	0.14252	6.5451E-05	0.1976	9.075E-05	0.34012	0.0001562	459.2561942213754	29.033	0.54425	29.111	28.824	29.368	0.078346					38	13	4	0	0	0	0.12602	1	1686	1686		104.75	0	1	5161100			74695	12334	52110	52196	82062	82062					0.03620596892085359
SPAKNPSSL	9	Unmodified	_SPAKNPSSL_					0	0	0		ENST00000555324.1_1_14:94545323-94547480:-|nuORF;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.74310302734375	2	450.742899	899.471246	-0.088117	-3.9718E-05	0.24937	0.0001124	0.16126	7.2686E-05	450.7428964662321	27.222	1.0616	27.222	26.783	27.844	0					74	27	4	0	0	0	0.013946	3	1479	1465;1479;1490		181.41	60.786	1	3370100			74696	1914	52111	52197	82063;82064;82065	82064					0.017489080007635494
SPAKNPSSL	9	Unmodified	_SPAKNPSSL_					0	0	0		ENST00000555324.1_1_14:94545323-94547480:-|nuORF;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.74322509765625	2	450.742899	899.471246	-0.20674	-9.3185E-05	0.3642	0.00016416	0.15747	7.0978E-05	450.7429358702678	27.189	0.89398	27.176	26.828	27.722	-0.012981					64	23	4	0	0	0	0.013719	3	1456	1445;1456;1469		168.26	60.171	1	3328800			74697	1914	52111	52197	82066;82067;82068	82067					0.017489080007635494
SPAKNPSSL	9	Unmodified	_SPAKNPSSL_					0	0	0		ENST00000555324.1_1_14:94545323-94547480:-|nuORF;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.74334716796875	2	450.742899	899.471246	-0.84797	-0.00038222	0.92596	0.00041737	0.077983	3.515E-05	450.74319544513025	26.906	0.93663	26.987	26.671	27.608	0.081293					57	24	4	0	0	0	0.014034	3	1381	1357;1368;1381		195.05	74.425	1	3594600			74698	1914	52111	52197	82069;82070;82071	82071					0.017489080007635494
SPAKVPSSH	9	Unmodified	_SPAKVPSSH_					0	0	0			REV__nc|ENSG00000214193|A4FU49|SH3D21	REV__nc|ENSG00000214193|A4FU49|SH3D21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.2607727050781	2	455.243067	908.47158	-0.6148	-0.00027988	0.45612	0.00020764	-0.15868	-7.224E-05	455.2432087103824	38.283	1.1889	38.201	37.918	39.107	-0.082516					61	32	4	0	0	0	0.024323	1	3298	3298		35.618	0	1	4490100	+		74699	28774	52112	52198	82072	82072					0.013683277206155253
SPAKVPSSH	9	Unmodified	_SPAKVPSSH_					0	0	0			REV__nc|ENSG00000214193|A4FU49|SH3D21	REV__nc|ENSG00000214193|A4FU49|SH3D21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2607421875	2	455.243067	908.47158	-0.64722	-0.00029464	1.5047	0.00068499	0.85745	0.00039035	455.2440214942486	39.2	0.28585	39.224	39.063	39.349	0.023727					10	7	2	0	0	0	0.024405	1	3288	3288		35.618	0	1	133870	+		74700	28774	52112	52198	82073	82073					0.013683277206155253
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.8034362792969	2	493.803291	985.59203	-0.1382	-6.8245E-05	-0.34685	-0.00017128	-0.48505	-0.00023952	493.80300918385444	32.05	1.3054	32.05	31.3	32.606	0					51	32	2	0	0	0	0.18994	1	2191	2191		90.601	16.346	1	2189200			74701	5680	52113	52199	82074	82074					0.09865735714208768
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.803291	985.59203	-0.33315	-0.00016451	-0.15788	-7.7962E-05	-0.49103	-0.00024247	493.80309460946177	31.953	1.0356	31.964	31.34	32.376	0.011797	0.026839	4.6493E-05	NaN	90.601	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2269400			74702	5680	52113	52199							0.09865735714208768
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.803291	985.59203	-0.38371	-0.00018947	-0.10854	-5.3598E-05	-0.49225	-0.00024307	493.8031194893519	31.729	1.1176	31.798	31.166	32.284	0.06896	-0.13924	9.522E-05	NaN	90.601	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1997700			74703	5680	52113	52199							0.09865735714208768
SPALLFCL	8	Unmodified	_SPALLFCL_					0	0	0		nc|ENSG00000182132|Q9NZI2-5|KCNIP1	nc|ENSG00000182132|Q9NZI2-5|KCNIP1	nc|ENSG00000182132|Q9NZI2-5|KCNIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	432.9155578613281	2	432.238407	862.462261	0.42011	0.00018159	2.373	0.0010257	2.7931	0.0012073	432.2401768301431	32.719	0.53389	32.782	32.428	32.962	0.062885					24	13	3	0	0	0	0.027866	1	2202	2202		37.028	1.8278	1	132190			74704	18567	52114	52200	82075	82075					0.025528431107204597
SPALRKPR	8	Unmodified	_SPALRKPR_					0	0	0		ENST00000572484.5_1_17:4235157-4269665:-|nuORF	ENST00000572484.5_1_17:4235157-4269665:-|nuORF	ENST00000572484.5_1_17:4235157-4269665:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7904052734375	2	462.790518	923.566484	-0.34922	-0.00016161	0.4206	0.00019465	0.071386	3.3037E-05	462.7905487372329	20.406	0.82506	20.301	19.791	20.616	-0.10477					35	16	3	0	0	0	0.94517	1	526	526		45.952	3.4775	1	326740			74705	17059	52115	52201	82076	82076					0.1016430598245961
SPALRKPR	8	Unmodified	_SPALRKPR_					0	0	0		ENST00000572484.5_1_17:4235157-4269665:-|nuORF	ENST00000572484.5_1_17:4235157-4269665:-|nuORF	ENST00000572484.5_1_17:4235157-4269665:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7904052734375	2	462.790518	923.566484	1.9647	0.00090923	-1.8817	-0.00087082	0.082989	3.8406E-05	462.7894844533639	20.272	0.97662	20.341	19.832	20.808	0.068901					44	19	4	0	0	0	0.94517	1	479	479		45.952	1.4209	1	334120			74706	17059	52115	52201	82077	82077					0.1016430598245961
SPALRTCFWVL	11	Unmodified	_SPALRTCFWVL_					0	0	0			REV__ENST00000485332.7_1_X:221590-221677:-|nuORF	REV__ENST00000485332.7_1_X:221590-221677:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.5513000488281	3	431.565514	1291.67471	-0.17243	-7.4413E-05	1.8797	0.00081123	1.7073	0.00073682	431.5665100223933	36.491	0.3106	36.529	36.338	36.648	0.038044					11	8	2	0	0	0	0.024771	1	2842	2842		65.157	32.118	1	105370	+		74707	33560	52116	52202	82078	82078					0.04054309450702931
SPALRTCFWVL	11	Unmodified	_SPALRTCFWVL_					0	0	0			REV__ENST00000485332.7_1_X:221590-221677:-|nuORF	REV__ENST00000485332.7_1_X:221590-221677:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	431.565514	1291.67471	0.30458	0.00013145	0.2	8.6315E-05	0.50459	0.00021776	431.56524973826504	36.704	0.55724	36.498	36.242	36.8	-0.20518	-0.015304	-0.00022482	NaN	65.157	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240910	+		74708	33560	52116	52202							0.04054309450702931
SPAPARKP	8	Unmodified	_SPAPARKP_					0	0	0		nc|ENSG00000164877|Q8IY33-4|MICALL2;ENST00000472100.5_1_7:1481822-1498962:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;ENSG00000164877|ENST00000297508|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	nc|ENSG00000164877|Q8IY33-4|MICALL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	412.2308044433594	2	412.24287	822.471186	-0.47548	-0.00019601	1.6003	0.00065973	1.1249	0.00046372	412.24389067009065	27.407	0.43326	27.488	27.1	27.534	0.081293					19	11	2	0	0	0	0.027866	1	1415	1415		25.45	6.0902	1	128270			74709	7331	52117	52203	82079	82079					0.05284952791419073
SPAPHAFTI	9	Unmodified	_SPAPHAFTI_					0	0	0			REV__ZBTB4|p.S470C|1|0.45|ENSG00000174282|chr17:7463573-7463573|G/C|missense_variant	REV__ZBTB4|p.S470C|1|0.45|ENSG00000174282|chr17:7463573-7463573|G/C|missense_variant	MSMS	OPSCC_39_ClassI_Rep-2	2	470.75079345703125	2	470.747985	939.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.54	1	103.54	103.04	104.04	0.0054245								0	0	0	0.51175	1	13248	13248		51.335	19.381	1		+		74710	26850	52118	52204	82080	82080					0.009255157259872249
SPAPLPHL	8	Unmodified	_SPAPLPHL_					0	0	0			REV__ENST00000216181.9_1_22:36678328-36678532:-|nuORF	REV__ENST00000216181.9_1_22:36678328-36678532:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.2381591796875	2	416.239796	830.465038	-0.068542	-2.853E-05	-2.7583	-0.0011481	-2.8268	-0.0011766	416.2384853766801	21.846	1.7794	21.757	21.5	23.279	-0.089378					72	38	4	0	0	0	1.0017	1	725	725		37.028	0	1	525730	+		74711	29310	52119	52205	82081	82081					0.04302434559906487
SPAPPPLPSS	10	Unmodified	_SPAPPPLPSS_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7501525878906	2	475.2531	948.491647	-0.012367	-5.8774E-06	-4.0856	-0.0019417	-4.098	-0.0019476	475.2510928103512	28.189	1.0353	28.27	27.871	28.907	0.080811					57	24	3	0	0	0	0.03519	1	1554	1554		49.442	0	1	1359500			74712	4285	52120	52206	82082	82082					0.01534078660574778
SPAPPRAPPR	10	Unmodified	_SPAPPRAPPR_					0	0	0			REV__ENST00000397581.6_1_9:14313743-14314127:-|nuORF	REV__ENST00000397581.6_1_9:14313743-14314127:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2670288085938	2	523.298707	1044.58286	-0.82574	-0.00043211	-0.10968	-5.7396E-05	-0.93542	-0.0004895	523.2983710962943	26.961	0.93166	26.961	26.283	27.215	0					46	22	3	0	0	0	0.03519	1	1404	1404		13.454	0	1	193050	+		74713	31777	52121	52207	82083	82083					0.06235387148535665
SPAPTHNSL	9	Unmodified	_SPAPTHNSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2321472167969	2	462.232699	922.450845	-0.98674	-0.0004561	-0.34194	-0.00015806	-1.3287	-0.00061416	462.2324897371332	28.718	1.5389	28.718	28.113	29.652	0					85	37	5	0	0	0	0.014918	4	1692	1680;1692;1709;1723		162.25	60.652	1	5778200			74714	7968	52122	52208	82084;82085;82086;82087	82085					-0.013482626590644031
SPAPTHNSL	9	Unmodified	_SPAPTHNSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2320251464844	2	462.232699	922.450845	-0.44792	-0.00020704	-0.85797	-0.00039658	-1.3059	-0.00060362	462.232112915075	28.718	1.3446	28.714	28.117	29.462	-0.0042					97	32	6	0	0	0	0.020687	4	1676	1665;1676;1688;1700		148.99	72.14	1	5581300			74715	7968	52122	52208	82088;82089;82090;82091	82089					-0.013482626590644031
SPAPTHNSL	9	Unmodified	_SPAPTHNSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.2322082519531	2	462.232699	922.450845	0.38859	0.00017962	-1.5568	-0.00071958	-1.1682	-0.00053996	462.2319017985757	28.379	1.492	28.46	27.795	29.287	0.080811					78	36	4	0	0	0	0.03666	4	1601	1580;1588;1601;1613		136.27	50.909	1	5639400			74716	7968	52122	52208	82092;82093;82094;82095	82094					-0.013482626590644031
SPAPVEKI	8	Unmodified	_SPAPVEKI_					0	0	0		ENST00000369563.3_1_1:114448044-114448212:+|nuORF	ENST00000369563.3_1_1:114448044-114448212:+|nuORF	ENST00000369563.3_1_1:114448044-114448212:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7437744140625	2	420.744911	839.475269	-0.4771	-0.00020074	-2.6344	-0.0011084	-3.1115	-0.0013091	420.7438210366682	27.588	1.4098	27.588	27.286	28.696	0					86	35	4	0	0	0	1.0284	1	1542	1542		32.812	2.3088	1	9148300			74717	12926	52123	52209	82096	82096					0.04910997494471303
SPAPVEKI	8	Unmodified	_SPAPVEKI_					0	0	0		ENST00000369563.3_1_1:114448044-114448212:+|nuORF	ENST00000369563.3_1_1:114448044-114448212:+|nuORF	ENST00000369563.3_1_1:114448044-114448212:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.7435302734375	2	420.744911	839.475269	-0.63911	-0.0002689	-2.6212	-0.0011029	-3.2603	-0.0013718	420.7438491452349	27.388	1.8086	27.469	27.136	28.945	0.081291					105	45	4	0	0	0	1.0198	2	1451	1451;1463		34.173	3.6689	1	10915000			74718	12926	52123	52209	82097;82098	82097					0.04910997494471303
SPAPVRTPAR	10	Unmodified	_SPAPVRTPAR_					0	0	0		ENST00000597415.5_2_19:49956631-49956676:-|nuORF	ENST00000597415.5_2_19:49956631-49956676:-|nuORF	ENST00000597415.5_2_19:49956631-49956676:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2738037109375	2	526.30399	1050.59343	-0.75836	-0.00039913	-2.1584	-0.001136	-2.9167	-0.0015351	526.3026063053096	34.364	0.15979	34.189	34.05	34.21	-0.17557					5	3	2	0	0	0	0.03519	1	2502	2502		47.657	0	1	70836			74719	17448	52124	52210	82099	82099					0.07015369802979876
SPAPWTRLHDL	11	Unmodified	_SPAPWTRLHDL_					0	0	0			REV__ENST00000322610.12_2_16:28877725-28877995:+|nuORF	REV__ENST00000322610.12_2_16:28877725-28877995:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	431.5510559082031	3	431.56305	1291.66732	-0.34291	-0.00014799	-0.25731	-0.00011105	-0.60023	-0.00025904	431.563301303807	36.462	0.31405	36.462	36.334	36.648	0					19	8	3	0	0	0	0.024786	1	2891	2891		47.228	6.1187	1	199770	+		74720	30364	52125	52211	82100	82100					0.033152931746371905
SPAPWTRLHDL	11	Unmodified	_SPAPWTRLHDL_					0	0	0			REV__ENST00000322610.12_2_16:28877725-28877995:+|nuORF	REV__ENST00000322610.12_2_16:28877725-28877995:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	431.56305	1291.66732	0.11025	4.7578E-05	5.816	0.00251	5.9263	0.0025576	431.565461486976	36.645	0.48335	36.429	36.245	36.729	-0.21661	-0.0061073	0.0013893	NaN	47.228	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282390	+		74721	30364	52125	52211							0.033152931746371905
SPAPWTRLHDL	11	Unmodified	_SPAPWTRLHDL_					0	0	0			REV__ENST00000322610.12_2_16:28877725-28877995:+|nuORF	REV__ENST00000322610.12_2_16:28877725-28877995:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	431.56305	1291.66732	2.0534	0.00088618	4.0304	0.0017394	6.0838	0.0026256	431.5646463965002	36.612	0.87769	36.413	36.132	37.01	-0.19829	-0.021517	-0.0009226	NaN	47.228	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333180	+		74722	30364	52125	52211							0.033152931746371905
SPAQRNSQ	8	Unmodified	_SPAQRNSQ_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1;PLEKHG1|p.P505L|1|0.36|ENSG00000120278|chr6:150830625-150830625|C/T|missense_variant	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.2204284667969	2	444.220123	886.425693	-0.29565	-0.00013133	0.49207	0.00021859	0.19642	8.7255E-05	444.2202205983544	26.053	1.2646	25.885	25.544	26.809	-0.16816					61	33	2	0	0	0	0.73796	1	1297	1297		64.207	10.856	1	4733900			74723	3803	52126	52212	82101	82101					-0.02206317461616436
SPAQRNSQ	8	Unmodified	_SPAQRNSQ_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1;PLEKHG1|p.P505L|1|0.36|ENSG00000120278|chr6:150830625-150830625|C/T|missense_variant	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	444.220123	886.425693	-0.7853	-0.00034885	0.81921	0.00036391	0.033909	1.5063E-05	444.22038995571666	26.228	1.1555	25.992	25.762	26.918	-0.23603	0.063953	0.00012067	NaN	64.207	55	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3962800			74724	3803	52126	52212							-0.02206317461616436
SPAQRNSQ	8	Unmodified	_SPAQRNSQ_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1;PLEKHG1|p.P505L|1|0.36|ENSG00000120278|chr6:150830625-150830625|C/T|missense_variant	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	444.220123	886.425693	-0.81634	-0.00036264	0.76659	0.00034053	-0.049753	-2.2101E-05	444.2203445279721	26.072	1.5852	25.908	25.674	27.259	-0.16331	-0.02	7.3918E-05	NaN	64.207	72	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4879700			74725	3803	52126	52212							-0.02206317461616436
SPARILAF	8	Unmodified	_SPARILAF_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.1483459472656	2	437.760895	873.507237	-0.32411	-0.00014188	1.5175	0.00066432	1.1934	0.00052244	437.76117631114033	42.937	0.79543	42.699	42.452	43.247	-0.23736					41	20	3	0	0	0	0.027866	1	3929	3929		8.2313	0.54101	1	366510			74726	9029	52127	52213	82102	82102					0.06542409968267293
SPARNYLF	8	Unmodified	_SPARNYLF_					0	0	0			REV__ENST00000309964.8_1_4:56301481-56301745:-|nuORF	REV__ENST00000309964.8_1_4:56301481-56301745:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2528076171875	2	484.253434	966.492316	-0.59929	-0.00029021	0.44139	0.00021374	-0.1579	-7.6464E-05	484.25353908571805	52.208	1.3291	52.3	51.967	53.297	0.091938					88	34	5	0	0	0	0.845	1	5518	5518		55.504	0	1	6796000	+		74727	30175	52128	52214	82103	82103					0.007729181002673613
SPARPQET	8	Unmodified	_SPARPQET_					0	0	0			REV__ENST00000360938.7_1_21:40177877-40181959:+|nuORF	REV__ENST00000360938.7_1_21:40177877-40181959:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.25909423828125	2	443.224874	884.435195	-0.17707	-7.8484E-05	0.65173	0.00028887	0.47466	0.00021038	443.22497773034627	27.011	1.1918	27.011	26.243	27.435	0					67	29	4	0	0	0	0.027866	1	1458	1458		42.396	3.59	1	1782700	+		74728	30924	52129	52215	82104	82104					-0.01164549176098717
SPARRAPAE	9	Unmodified	_SPARRAPAE_					0	0	0			REV__nc|ENSG00000262246|P57737-2|CORO7	REV__nc|ENSG00000262246|P57737-2|CORO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77752685546875	2	477.759415	953.504277	0.23881	0.0001141	-2.8557	-0.0013643	-2.6169	-0.0012502	477.75838092926244	27.38	0.52162	27.38	27.323	27.844	0					21	13	2	0	0	0	0.024261	1	1535	1535		45.972	20.522	1	313260	+		74729	29121	52130	52216	82105	82105					0.02566534843458612
SPARRAPAE	9	Unmodified	_SPARRAPAE_					0	0	0			REV__nc|ENSG00000262246|P57737-2|CORO7	REV__nc|ENSG00000262246|P57737-2|CORO7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.759415	953.504277	-0.57995	-0.00027708	-4.3992	-0.0021018	-4.9792	-0.0023789	477.7593260813151	27.294	0.38152	27.125	26.892	27.273	-0.16816	-0.10626	-0.00061163	NaN	45.972	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64285	+		74730	29121	52130	52216							0.02566534843458612
SPARRAPAE	9	Unmodified	_SPARRAPAE_					0	0	0			REV__nc|ENSG00000262246|P57737-2|CORO7	REV__nc|ENSG00000262246|P57737-2|CORO7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.759415	953.504277	-0.1585	-7.5723E-05	-4.0782	-0.0019484	-4.2367	-0.0020241	477.7595382391843	27.346	0.50357	27.189	26.93	27.434	-0.15664	-0.04222	-0.00030487	NaN	45.972	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84187	+		74731	29121	52130	52216							0.02566534843458612
SPARWRRTRCL	11	Unmodified	_SPARWRRTRCL_					0	0	0			REV__ENST00000602529.1_1_1:228463365-228463719:-|nuORF	REV__ENST00000602529.1_1_1:228463365-228463719:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7901306152344	3	467.926328	1400.75715	-0.18925	-8.8557E-05	-2.8936	-0.001354	-3.0829	-0.0014426	467.9248137011404	26.986	0.81128	26.973	26.579	27.391	-0.012983					55	20	4	0	0	0	0.024821	1	1473	1473		25.126	0.89417	1	1342400	+		74732	35878	52131	52217	82106	82106					0.07280644302250039
SPASAARQL	9	Unmodified	_SPASAARQL_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-2|FSTL4;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7484130859375	2	450.748516	899.482479	-0.39225	-0.0001768	-1.5082	-0.00067983	-1.9005	-0.00085664	450.7485730136545	31.369	0.86602	31.369	31.003	31.869	0					69	20	5	0	0	0	0.015752	4	2095	2071;2082;2095;2109		158.07	54.786	1	3248900			74733	1157	52132	52218	82107;82108;82109;82110	82109					0.028717300948869706
SPASAARQL	9	Unmodified	_SPASAARQL_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-2|FSTL4;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.748046875	2	450.748516	899.482479	-0.081287	-3.664E-05	-1.4953	-0.00067401	-1.5766	-0.00071065	450.7484452119185	31.264	0.74616	31.276	30.956	31.702	0.011797					53	17	4	0	0	0	0.015064	3	2054	2045;2054;2068		190.52	71.775	1	2902400			74734	1157	52132	52218	82111;82112;82113	82112					0.028717300948869706
SPASAARQL	9	Unmodified	_SPASAARQL_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-2|FSTL4;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.7481689453125	2	450.748516	899.482479	-0.17333	-7.8127E-05	-1.9523	-0.00087998	-2.1256	-0.00095811	450.7484561614279	30.966	0.9448	31.039	30.665	31.609	0.072166					71	22	5	0	0	0	0.025498	3	1985	1964;1972;1985		145.16	48.965	1	3115900			74735	1157	52132	52218	82114;82115;82116	82116					0.028717300948869706
SPASRGESH	9	Unmodified	_SPASRGESH_					0	0	0			REV__ENSG00000127511|ENST00000248054|SIN3B	REV__ENSG00000127511|ENST00000248054|SIN3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2303161621094	2	464.21758	926.420607	0.7105	0.00032983	-3.8007	-0.0017644	-3.0902	-0.0014345	464.21560546295655	37.337	0.30055	37.369	37.149	37.45	0.032269					11	7	2	0	0	0	0.024436	1	2988	2988		30.504	2.2494	1	93627	+		74736	22935	52133	52219	82117	82117					-0.04554621324234631
SPASSRTDL	9	Unmodified	_SPASSRTDL_					0	0	0		ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR	ENSG00000124275|ENST00000440940|MTRR	ENSG00000124275|ENST00000440940|MTRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.79010009765625	2	467.235439	932.456324	-0.46036	-0.0002151	0.95599	0.00044667	0.49562	0.00023157	467.23597325429563	27.371	0.61705	27.371	27.109	27.726	0					39	16	3	0	0	0	0.024283	1	1497	1497		65.465	0	1	535330			74737	4039	52134	52220	82118	82118					-0.012605838672243408
SPASSRTDL	9	Unmodified	_SPASSRTDL_					0	0	0		ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR	ENSG00000124275|ENST00000440940|MTRR	ENSG00000124275|ENST00000440940|MTRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.7901306152344	2	467.235439	932.456324	-0.20983	-9.804E-05	0.60339	0.00028192	0.39356	0.00018388	467.23583913885676	27.298	0.54057	27.285	27.067	27.608	-0.012983					36	14	3	0	0	0	0.024344	1	1473	1473		37.812	0	1	474370			74738	4039	52134	52220	82119	82119					-0.012605838672243408
SPASSSLPAF	10	Unmodified	_SPASSSLPAF_					0	0	0		ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-1|TNS1;TNS1|p.L975Sfs*37|1|0.3|ENSG00000079308|chr2:217831534-217831535|-/G|frameshift_variant	ENSG00000079308|ENST00000682258|TNS1	ENSG00000079308|ENST00000682258|TNS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2625732421875	2	482.242732	962.470912	-0.60723	-0.00029283	0.28578	0.00013782	-0.32145	-0.00015502	482.24335598128005	35.491	0.27969	35.536	35.42	35.699	0.04406					8	6	2	0	0	0	0.03519	1	2704	2704		63.306	8.53	1	41242			74739	1657	52135	52221	82120	82120					-0.01182511719082413
SPASTSPPRV	10	Unmodified	_SPASTSPPRV_					0	0	0		nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	nc|ENSG00000166046|Q8N4U5-2|TCP11L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7660827636719	2	499.766906	997.519259	-0.75981	-0.00037973	-0.091504	-4.5731E-05	-0.85131	-0.00042546	499.76671733415594	36.393	0.99409	36.351	35.931	36.925	-0.042458					91	26	6	0	0	0	0.69662	1	2902	2902		67.494	14.557	1	6903200			74740	7500	52136	52222	82121	82121					0.020399819208023473
SPATPEWLLLD	11	Unmodified	_SPATPEWLLLD_					0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.21209716796875	3	414.551928	1240.63395	-0.55049	-0.00022821	3.1788	0.0013178	2.6283	0.0010896	414.55324524517835	29.672	0.36485	29.672	29.408	29.773	0					13	8	2	0	0	0	0.02477	1	1812	1812		17.167	1.8293	1	180940	+		74741	19182;20344	52137	52223	82122	82122					0.023262466120968384
SPATRRVQV	9	Unmodified	_SPATRRVQV_					0	0	0		GALK2-C15orf43|1|fusion;ENSG00000156958|ENST00000560031|GALK2;ENST00000396509.6_1_15:49462519-49493382:+|nuORF;ENST00000558145.5_1_15:49462519-49477826:+|nuORF;ENST00000559095.1_1_15:49462519-49486129:+|nuORF;ENST00000544523.5_1_15:49462519-49487396:+|nuORF	GALK2-C15orf43|1|fusion	GALK2-C15orf43|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.77899169921875	2	507.296165	1012.57778	0.002858	1.4499E-06	4.257	0.0021596	4.2599	0.002161	507.29877202522306	98.9	0.6619	98.9	98.562	99.224	0					21	14	2	0	0	0	0.024495	1	12612	12612		26.693	0	1	29647			74742	6561	52138	52224	82123	82123					0.07199083285945562
SPATSVGGAL	10	Unmodified	_SPATSVGGAL_					0	0	0			REV__ENST00000503709.1_1_4:2951967-2963118:+|nuORF	REV__ENST00000503709.1_1_4:2951967-2963118:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.23193359375	2	430.229625	858.444697	-0.43166	-0.00018571	2.239	0.00096326	1.8073	0.00077755	430.2305479846648	26.147	0.79497	26.147	25.652	26.447	0					50	18	4	0	0	0	0.42446	1	1287	1287		96.19	0	1	1566500	+		74743	33964	52139	52225	82124	82124					0.009812191094397349
SPATSVGGAL	10	Unmodified	_SPATSVGGAL_					0	0	0			REV__ENST00000503709.1_1_4:2951967-2963118:+|nuORF	REV__ENST00000503709.1_1_4:2951967-2963118:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.2324523925781	2	430.229625	858.444697	-0.43636	-0.00018774	2.6202	0.0011273	2.1838	0.00093954	430.23057766107627	26.153	0.7541	26.13	25.651	26.405	-0.023088					54	17	4	0	0	0	0.60198	1	1269	1269		76.774	2.5191	1	1552000	+		74744	33964	52139	52225	82125	82125					0.009812191094397349
SPAVAMAPAP	10	Unmodified	_SPAVAMAPAP_					0	0	0		ENST00000393844.5_1_6:44187395-44187434:+|nuORF	ENST00000393844.5_1_6:44187395-44187434:+|nuORF	ENST00000393844.5_1_6:44187395-44187434:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7663269042969	2	456.236396	910.458238	-0.61111	-0.00027881	-3.1243	-0.0014254	-3.7354	-0.0017042	456.234724514541	44.178	0.53733	44.178	43.948	44.485	0					31	15	3	0	0	0	0.03519	1	4175	4175		45.952	15.448	1	446980			74745	13472	52140	52226	82126	82126					-0.0005724638299398066
SPAVGPLGL	9	Unmodified	_SPAVGPLGL_					0	0	0			REV__ENST00000573846.1_1_16:67976229-67976612:-|nuORF	REV__ENST00000573846.1_1_16:67976229-67976612:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.73822021484375	2	405.739628	809.464704	1.1076	0.0004494	-1.279	-0.00051894	-0.17139	-6.9541E-05	405.7389405805362	62.403	0.93373	62.466	62.201	63.135	0.062763					51	23	3	0	0	0	0.78069	1	7166	7166		40.573	5.3719	1	3524300	+		74746	29706	52141	52227	82127	82127					0.05235014840047825
SPAVKRLL	8	Unmodified	_SPAVKRLL_					0	0	0		SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant;nc|ENSG00000120693|O15198-2|SMAD9;ENSG00000170365|ENST00000302085|SMAD1;ENSG00000113658|ENST00000545279|SMAD5;ENSG00000120693|ENST00000379826|SMAD9	SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.8931579589844	2	442.28982	882.565087	-0.5019	-0.00022198	0.31883	0.00014102	-0.18306	-8.0967E-05	442.2898101545103	35.145	0.74707	34.933	34.725	35.472	-0.21246					44	18	3	0	0	0	0.027866	1	2634	2634		44.117	13.613	1	1012200			74747	3318	52142	52228	82128	82128					0.11910671893701874
SPAVKRLL	8	Unmodified	_SPAVKRLL_					0	0	0		SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant;nc|ENSG00000120693|O15198-2|SMAD9;ENSG00000170365|ENST00000302085|SMAD1;ENSG00000113658|ENST00000545279|SMAD5;ENSG00000120693|ENST00000379826|SMAD9	SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	SMAD9|p.F385Sfs*24|1|0.2|ENSG00000120693|chr13:36853525-36853525|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.89306640625	2	442.28982	882.565087	-0.15347	-6.7877E-05	-0.56375	-0.00024934	-0.71721	-0.00031722	442.28954790815055	35.068	0.62101	34.881	34.519	35.14	-0.18675					26	15	2	0	0	0	0.027866	1	2608	2608		45.952	1.8352	1	1149300			74748	3318	52142	52228	82129	82129					0.11910671893701874
SPAVLALALL	10	Unmodified	_SPAVLALALL_					0	0	0			REV__ENSG00000180044|ENST00000326474|C3orf80	REV__ENSG00000180044|ENST00000326474|C3orf80	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.3128662109375	2	484.312961	966.611368	0.32462	0.00015722	-0.57586	-0.0002789	-0.25124	-0.00012168	484.31246372669887	99.613	0.77578	99.613	99.135	99.91	0					44	17	3	0	0	0	0.55296	1	12768	12768		82.305	8.3303	1	1008200	+		74749	27312	52143	52229	82130	82130					0.12672692005139652
SPAVRSIPE	9	Unmodified	_SPAVRSIPE_					0	0	0			REV__ENST00000221980.4_1_19:10402386-10402776:+|nuORF	REV__ENST00000221980.4_1_19:10402386-10402776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3004455566406	2	478.263999	954.513445	-1.095	-0.00052369	1.2619	0.00060352	0.1669	7.9823E-05	478.26462663382966	37.942	0.58497	37.969	37.746	38.331	0.027275					26	16	2	0	0	0	0.021513	1	3072	3072		104.75	7.2739	1	203530	+		74750	29351	52144	52230	82131	82131					0.034368834091424105
SPAVSRTQL	9	Unmodified	_SPAVSRTQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7691955566406	2	479.769448	957.524344	-0.063233	-3.0337E-05	-0.10313	-4.9479E-05	-0.16636	-7.9816E-05	479.7693288274693	34.962	1.0508	34.962	34.292	35.343	0					65	27	4	0	0	0	0.18994	3	2640	2640;2651;2663		90.601	20.683	1	5063100			74751	18548	52145	52231	82132;82133;82134	82132					0.04388285783431911
SPAVSRTQL	9	Unmodified	_SPAVSRTQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7688903808594	2	479.769448	957.524344	-0.41663	-0.00019988	0.19726	9.4639E-05	-0.21937	-0.00010525	479.76948996008974	34.758	0.69121	34.736	34.357	35.049	-0.021767					62	17	6	0	0	0	0.15388	2	2613	2596;2613		98.582	23.107	1	4671900			74752	18548	52145	52231	82135;82136	82136					0.04388285783431911
SPAVSRTQL	9	Unmodified	_SPAVSRTQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7691345214844	2	479.769448	957.524344	-0.6381	-0.00030614	0.52705	0.00025286	-0.11104	-5.3275E-05	479.76964243267156	34.796	0.83155	34.847	34.367	35.198	0.050255					65	21	4	0	0	0	0.18994	2	2561	2561;2572		90.601	15.558	1	4656800			74753	18548	52145	52231	82137;82138	82137					0.04388285783431911
SPAWLELL	8	Unmodified	_SPAWLELL_					0	0	0		ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.23052978515625	2	464.760561	927.506569	-0.025952	-1.2061E-05	2.1815	0.0010139	2.1556	0.0010018	464.76067353125285	37.489	0.39809	37.489	37.269	37.667	0					16	10	2	0	0	0	0.027866	1	3036	3036		62.978	22.406	1	69882			74754	2240	52146	52232	82139	82139					0.03991570528569355
SPAYGPPLL	9	Unmodified	_SPAYGPPLL_					0	0	0			REV__ENST00000587962.6_1_19:2233386-2233572:-|nuORF	REV__ENST00000587962.6_1_19:2233386-2233572:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.75152587890625	2	457.752736	913.490919	-0.93288	-0.00042703	-3.0771	-0.0014086	-4.01	-0.0018356	457.75112514674305	29.847	1.2285	29.847	28.947	30.176	0					50	30	3	0	0	0	0.75282	1	1879	1879		42.474	5.3154	1	1198600	+		74755	35637	52147	52233	82140	82140					0.030712840115256768
SPCFLFFC	8	Unmodified	_SPCFLFFC_					0	0	0			REV__ENST00000464199.5_1_20:9351789-9459633:+|nuORF	REV__ENST00000464199.5_1_20:9351789-9459633:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7587585449219	2	482.208792	962.403032	-0.25977	-0.00012526	3.4782	0.0016772	3.2185	0.001552	482.2104559779475	22.083	0.33062	22.083	21.868	22.198	0					9	6	2	0	0	0	0.027866	1	715	715		39.021	18.54	1	44297	+		74756	32965	52148	52234	82141	82141					-0.07967376175110985
SPCFLFFC	8	Unmodified	_SPCFLFFC_					0	0	0			REV__ENST00000464199.5_1_20:9351789-9459633:+|nuORF	REV__ENST00000464199.5_1_20:9351789-9459633:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.208792	962.403032	-0.28843	-0.00013908	3.8234	0.0018437	3.535	0.0017046	482.21058586210546	22.181	0.47342	22.106	21.89	22.363	-0.075296	0.011095	0.00012294	NaN	21.702	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41891	+		74757	32965	52148	52234							-0.07967376175110985
SPCLPGLIK	9	Unmodified	_SPCLPGLIK_					0	0	0			REV__ENST00000478610.5_1_6:33264453-33265760:-|nuORF	REV__ENST00000478610.5_1_6:33264453-33265760:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2502746582031	2	464.270238	926.525924	-0.59519	-0.00027633	-2.6392	-0.0012253	-3.2344	-0.0015016	464.26948162504414	48.171	0.20099	48.018	47.924	48.125	-0.15301					8	5	2	0	0	0	0.024381	1	4855	4855		55.504	16.483	1	412670	+		74758	33373	52149	52235	82142	82142					0.059722035478330326
SPCQRLLVL	9	Unmodified	_SPCQRLLVL_					0	0	0		PCDHA10|p.R643C|1|0.27|ENSG00000250120|chr5:140857975-140857975|C/T|missense_variant	PCDHA10|p.R643C|1|0.27|ENSG00000250120|chr5:140857975-140857975|C/T|missense_variant	PCDHA10|p.R643C|1|0.27|ENSG00000250120|chr5:140857975-140857975|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7991943359375	2	514.799694	1027.58484	-0.54969	-0.00028298	0.075233	3.873E-05	-0.47445	-0.00024425	514.7996695574594	45.302	1.4969	45.203	44.868	46.365	-0.099445					97	41	5	0	0	0	0.27161	1	4295	4295		79.451	8.1553	1	15757000			74759	18946	52150	52236	82143	82143					0.07214679842149962
SPCVDTAPK	9	Unmodified	_SPCVDTAPK_					0	0	0		nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	nc|ENSG00000103042|Q9NVC3-2|SLC38A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2247619628906	2	459.223485	916.432418	-0.30652	-0.00014076	3.9201	0.0018002	3.6135	0.0016594	459.225414960314	26.111	2.5464	25.943	25.502	28.048	-0.16816					199	64	5	0	0	0	0.42604	1	1378	1378		64.207	3.2353	1	47552000			74760	2458	52152	52237	82144	82144					-0.029141406252620072
SPDFYEESET	10	Unmodified	_SPDFYEESET_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5511474609375	3	401.827786	1202.46153	1.2748	0.00051223	2.6931	0.0010822	3.9678	0.0015944	401.82808091499794	23.337	0.27072	23.146	22.897	23.167	-0.19117					8	5	2	0	0	0	0.03519	1	885	885		14.086	0	1	18345			74761	1238;18054	52153	52238	82145	82145					-0.13160369585943954
SPDLEKPQL	9	Unmodified	_SPDLEKPQL_					0	0	0			REV__ENST00000520536.1_1_8:22475798-22477192:+|nuORF	REV__ENST00000520536.1_1_8:22475798-22477192:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7772216796875	2	513.776939	1025.53933	-0.12485	-6.4143E-05	-0.68632	-0.00035261	-0.81117	-0.00041676	513.7755134328837	102.48	0.86111	102.49	102.11	102.97	0.0073471					45	20	4	0	0	0	0.89441	1	13109	13109		32.812	6.1195	1	538080	+		74762	34295	52154	52239	82146	82146					0.027577328607549134
SPDLKSKGTS	10	Unmodified	_SPDLKSKGTS_					0	0	0		nc|ENSG00000163635|O15265-2|ATXN7	nc|ENSG00000163635|O15265-2|ATXN7	nc|ENSG00000163635|O15265-2|ATXN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.268798828125	2	510.272021	1018.52949	-0.31012	-0.00015825	-3.3399	-0.0017042	-3.65	-0.0018625	510.7713158742457	46.274	0.20016	46.326	46.274	46.474	0.051395					7	5	2	0	0	0	0.03519	1	4525	4525		19.104	6.2918	1	63755			74763	18449	52155	52240	82147	82147					0.020965448553852184
SPDPPIWAR	9	Unmodified	_SPDPPIWAR_					0	0	0			REV__ENST00000496080.1_1_7:149420759-149421776:+|nuORF	REV__ENST00000496080.1_1_7:149420759-149421776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3400268554688	2	519.771991	1037.52943	-0.73784	-0.00038351	-4.2059	-0.0021861	-4.9438	-0.0025696	519.7697391359837	23.449	0.40578	23.388	23.152	23.557	-0.060862					13	9	2	0	0	0	0.024436	1	887	887		38.806	1.647	1	78212	+		74764	33815	52156	52241	82148	82148					0.012165896460373915
SPDPPIWAR	9	Unmodified	_SPDPPIWAR_					0	0	0			REV__ENST00000496080.1_1_7:149420759-149421776:+|nuORF	REV__ENST00000496080.1_1_7:149420759-149421776:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.771991	1037.52943	-0.85422	-0.000444	-3.6612	-0.001903	-4.5155	-0.002347	519.7701384601909	23.475	0.4541	23.475	23.283	23.737	0	0.058513	0.00033101	NaN	38.806	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106700	+		74765	33815	52156	52241							0.012165896460373915
SPDQSGLDI	9	Unmodified	_SPDQSGLDI_					0	0	0		ENSG00000069667|ENST00000335670|RORA;nc|ENSG00000069667|P35398-4|RORA;nc|ENSG00000069667|P35398-3|RORA;nc|ENSG00000069667|P35398-1|RORA	ENSG00000069667|ENST00000335670|RORA	ENSG00000069667|ENST00000335670|RORA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.26629638671875	2	466.221997	930.429441	0.66967	0.00031222	-3.9938	-0.001862	-3.3241	-0.0015498	466.22090203135247	65.818	0.19162	65.848	65.737	65.929	0.030106					6	4	2	0	0	0	0.024288	1	7736	7736		36.447	12.244	1	28557			74766	1404	52157	52242	82149	82149					-0.03855692478407491
SPDSRASSL	9	Unmodified	_SPDSRASSL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2245178222656	2	460.227613	918.440674	-0.24294	-0.00011181	0.91649	0.00042179	0.67354	0.00030998	460.2279187135976	27.294	0.92854	27.294	27.034	27.963	0					58	24	4	0	0	0	0.041068	3	1501	1478;1489;1501		132.76	45.004	1	3338500			74767	1141	52158	52243	82150;82151;82152	82152					-0.021808703842907562
SPDSRASSL	9	Unmodified	_SPDSRASSL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2272644042969	2	460.227613	918.440674	-0.30051	-0.0001383	0.89825	0.0004134	0.59774	0.0002751	460.22791009399384	27.272	1.1145	27.259	26.994	28.108	-0.012983					66	29	4	0	0	0	0.034407	3	1468	1457;1468;1481		138.06	38.546	1	3378300			74768	1141	52158	52243	82153;82154;82155	82154					-0.021808703842907562
SPEAVQILY	9	Unmodified	_SPEAVQILY_					0	0	0		ENSG00000111962|ENST00000367463|UST;ENST00000466695.1_1_6:149387353-149395249:+|nuORF	ENSG00000111962|ENST00000367463|UST	ENSG00000111962|ENST00000367463|UST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.27410888671875	2	510.274032	1018.53351	0.10769	5.4951E-05	-0.35844	-0.0001829	-0.25075	-0.00012795	510.2738088160188	76.715	0.88044	76.464	76.023	76.903	-0.25163					63	20	4	0	0	0	0.27161	1	9155	9155		79.451	2.6044	1	8770500			74769	3161	52159	52244	82156	82156					0.024986343491036678
SPECHEDLN	9	Unmodified	_SPECHEDLN_					0	0	0		ENST00000273064.10_1_2:219459632-219459785:+|nuORF	ENST00000273064.10_1_2:219459632-219459785:+|nuORF	ENST00000273064.10_1_2:219459632-219459785:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2720336914062	2	522.208563	1042.40257	-0.24497	-0.00012793	-3.2284	-0.0016859	-3.4734	-0.0018138	522.206076532885	42.429	0.172	42.429	42.289	42.461	0					7	4	2	0	0	0	0.024447	1	3896	3896		13.454	0	1	125750			74770	11659	52160	52245	82157	82157					-0.11693124361249829
SPEDRYEEQER	11	Unmodified	_SPEDRYEEQER_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.76763916015625	3	479.879543	1436.6168	-0.23746	-0.00011395	1.0575	0.00050746	0.82002	0.00039351	479.87987471851557	36.462	0.48329	36.462	36.129	36.613	0					31	13	3	0	0	0	0.024735	1	2889	2889		16.53	0	1	277300			74771	7091	52161	52246	82158	82158					-0.08404325731657991
SPEETRAAL	9	Unmodified	_SPEETRAAL_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.25079345703125	2	487.251089	972.487624	-0.64616	-0.00031484	-0.74885	-0.00036488	-1.395	-0.00067972	487.2506699432553	33.361	1.2357	33.361	33.056	34.292	0					72	32	4	0	0	0	0.020687	4	2419	2385;2393;2405;2419		148.99	48.965	1	8143400			74772	1291	52162	52247	82159;82160;82161;82162	82162					0.0002798916684696451
SPEETRAAL	9	Unmodified	_SPEETRAAL_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.25067138671875	2	487.251089	972.487624	-0.76936	-0.00037487	-0.66009	-0.00032163	-1.4294	-0.0006965	487.2507176810294	33.23	1.4582	33.236	32.928	34.386	0.0066261					81	38	4	0	0	0	0.030064	3	2354	2354;2366;2380		141.52	31.183	1	8415200			74773	1291	52162	52247	82163;82164;82165	82163					0.0002798916684696451
SPEETRAAL	9	Unmodified	_SPEETRAAL_					0	0	0		ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	ENST00000561862.5_1_16:2089927-2090351:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.250732421875	2	487.251089	972.487624	0.042231	2.0577E-05	-1.5407	-0.0007507	-1.4985	-0.00073012	487.25031587178455	33.056	1.3379	33.113	32.8	34.137	0.056568					77	34	5	0	0	0	0.013924	4	2288	2288;2297;2309;2323		167.23	71.038	1	7499100			74774	1291	52162	52247	82166;82167;82168;82169	82166					0.0002798916684696451
SPEGAPQCL	9	Unmodified	_SPEGAPQCL_					0	0	0			REV__NCEH1-CCDC50|2|fusion	REV__NCEH1-CCDC50|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.235107421875	2	451.207835	900.401117	-0.672	-0.00030321	-1.461	-0.0006592	-2.133	-0.00096242	451.20760968709453	28.619	0.41266	28.619	28.449	28.862	0					13	9	2	0	0	0	0.022484	1	1659	1659		82.305	13.518	1	29344	+		74775	37264	52163	52248	82170	82170					-0.05306713659365414
SPEGGLLSLI	10	Unmodified	_SPEGGLLSLI_					0	0	0			REV__ENSG00000189339|ENST00000617444|SLC35E2B	REV__ENSG00000189339|ENST00000617444|SLC35E2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.28094482421875	2	493.281857	984.549162	-0.34104	-0.00016823	-2.5774	-0.0012714	-2.9185	-0.0014396	493.2805178341969	21.368	1.0191	21.439	20.91	21.929	0.071487					46	20	3	0	0	0	0.941	1	613	613		51.335	0.14276	1	354780	+		74776	28114	52164	52249	82171	82171					0.056269208661547054
SPEKGSPSL	9	Unmodified	_SPEKGSPSL_					0	0	0		ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	ENSG00000114650|ENST00000265565|SCAP	ENSG00000114650|ENST00000265565|SCAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.23480224609375	2	451.234907	900.455261	-0.17797	-8.0307E-05	-0.04386	-1.9791E-05	-0.22183	-0.0001001	451.23486877090727	28.148	0.91606	28.229	27.91	28.826	0.080812					63	21	4	0	0	0	0.086035	1	1548	1548		115.49	5.3742	1	7082000			74777	3374	52165	52250	82172	82172					0.0010520176386989988
SPEKPEKKN	9	Unmodified	_SPEKPEKKN_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-19|ZMYND8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8084106445312	2	528.787838	1055.56112	1.7729	0.00093746	-1.7882	-0.00094558	-0.015348	-8.1159E-06	528.7868446901698	63.791	0.53509	63.837	63.546	64.081	0.045502					25	14	2	0	0	0	0.024292	1	7394	7394		49.442	0	1	873070	+		74778	21178	52166	52251	82173	82173					0.03556537609347288
SPELPVSVE	9	Unmodified	_SPELPVSVE_					0	0	0		ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000452106.5_1_22:41623607-41626252:+|nuORF;ENST00000466589.5_1_22:41623698-41626252:+|nuORF	ENSG00000100395|ENST00000216237|L3MBTL2	ENSG00000100395|ENST00000216237|L3MBTL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.29534912109375	2	478.75039	955.486227	0.38235	0.00018305	0.99591	0.00047679	1.3783	0.00065984	478.7506708926676	24.229	0.74227	24.014	23.554	24.296	-0.2151					38	16	4	0	0	0	0.022924	1	1056	1056		63.306	18.775	1	364240			74779	2195	52167	52252	82174	82174					0.006703550781139711
SPEPHWLSL	9	Unmodified	_SPEPHWLSL_					0	0	0			REV__ENST00000562945.2_1_16:34428948-34429212:-|nuORF	REV__ENST00000562945.2_1_16:34428948-34429212:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.2696533203125	2	533.271824	1064.5291	-1.0314	-0.00055001	-2.9125	-0.0015532	-3.9439	-0.0021032	533.2702037819586	83.096	0.72412	83.122	82.917	83.641	0.026558					26	16	2	0	0	0	0.4752	1	10308	10308		60.972	9.6365	1	822250	+		74780	35210	52168	52253	82175	82175					-0.0005883007379452465
SPEPIGTF	8	Unmodified	_SPEPIGTF_					0	0	0			REV__ENSG00000188766|ENST00000691638|SPRED3	REV__ENSG00000188766|ENST00000691638|SPRED3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.1817626953125	2	424.213443	846.412334	0.097979	4.1564E-05	-3.7143	-0.0015756	-3.6163	-0.0015341	424.2117314413096	35.196	0.46317	34.98	34.753	35.216	-0.21556					16	11	2	0	0	0	0.027866	1	2621	2621		17.365	0	1	102480	+		74781	28061	52169	52254	82176	82176					-0.017015682935493714
SPESLRSKV	9	Unmodified	_SPESLRSKV_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3;ENST00000468476.1_1_1:40027621-40028049:-|nuORF;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MSMS	OPSCC_39_ClassI_Rep-3	3	501.78179931640625	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.243	1	28.324	27.824	28.824	0.080811								0	0	0	0.07376	1	1577	1577		98.582	13.666	1				74782	1434;6236	52170	52255	82177	82177					0.04984554954921805
SPESLRSKV	9	Unmodified	_SPESLRSKV_					0	0	0		ENSG00000151846|ENST00000281589|PABPC3;ENST00000468476.1_1_1:40027621-40028049:-|nuORF;nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MSMS	OPSCC_39_ClassI_Rep-3	3	501.7821044921875	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.343	1	28.424	27.924	28.924	0.080811								0	0	0	0.20126	1	1592	1592		75.043	8.614	1				74783	1434;6236	52170	52255	82178	82178					0.04984554954921805
SPESTPSPE	9	Unmodified	_SPESTPSPE_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.276123046875	2	465.70618	929.397806	0.12445	5.7959E-05	0.36433	0.00016967	0.48879	0.00022763	465.706225185729	47.575	0.48561	47.306	47.013	47.498	-0.26939					17	12	2	0	0	0	0.024436	1	4673	4673		16.473	4.9621	1	136910	+		74784	36958	52171	52256	82179	82179					-0.06971685232372238
SPESTPSPE	9	Unmodified	_SPESTPSPE_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.70618	929.397806	-0.050943	-2.3724E-05	1.567	0.00072975	1.516	0.00070603	465.7061189342022	47.317	0.3418	47.22	47.008	47.35	-0.096649	-0.033128	0.00091283	NaN	37.159	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131460	+		74785	36958	52171	52256							-0.06971685232372238
SPESTPSPE	9	Unmodified	_SPESTPSPE_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	REV__nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.70618	929.397806	-0.18133	-8.4447E-05	0.46817	0.00021803	0.28683	0.00013358	465.7060635163371	47.428	0.38534	47.234	46.997	47.382	-0.19387	-0.019195	-0.00011062	NaN	37.159	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206830	+		74786	36958	52171	52256							-0.06971685232372238
SPETRENAL	9	Unmodified	_SPETRENAL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.75555419921875	2	508.753995	1015.49344	-1.4653	-0.00074548	1.7993	0.00091542	0.33403	0.00016994	508.75487972776006	29.325	0.94524	29.325	29.032	29.977	0					56	23	4	0	0	0	0.041068	3	1784	1784;1795;1808		132.76	38.751	1	3094100			74787	5749	52172	52257	82180;82181;82182	82180					-0.0136891232148173
SPETRENAL	9	Unmodified	_SPETRENAL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7537536621094	2	508.753995	1015.49344	-0.64769	-0.00032951	1.1351	0.00057751	0.48745	0.00024799	508.7545354310279	29.296	0.90265	29.3	29.014	29.916	0.0031376					60	22	4	0	0	0	0.025498	3	1779	1767;1779;1791		145.16	37.068	1	3215400			74788	5749	52172	52257	82183;82184;82185	82184					-0.0136891232148173
SPETRENAL	9	Unmodified	_SPETRENAL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7561950683594	2	508.753995	1015.49344	-0.25553	-0.00013	2.5438	0.0012942	2.2883	0.0011642	508.7549074856719	28.918	1.0339	28.999	28.615	29.649	0.080812					95	25	6	0	0	0	0.025498	3	1680	1670;1680;1693		145.16	53.307	1	3273500			74789	5749	52172	52257	82186;82187;82188	82187					-0.0136891232148173
SPEVILPTV	9	Unmodified	_SPEVILPTV_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7776184082031	2	477.778951	953.543348	-0.86432	-0.00041295	-2.8242	-0.0013494	-3.6886	-0.0017623	477.77780002341314	27.145	2.5781	27.226	26.29	28.868	0.081293					199	64	5	0	0	0	0.4752	1	1464	1464		60.972	8.0352	1	98548000	+		74790	26377	52173	52258	82189	82189					0.06471822354467349
SPFDLVSPDL	10	Unmodified	_SPFDLVSPDL_					0	0	0			REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2759399414062	2	545.276772	1088.53899	-0.48422	-0.00026403	-4.1077	-0.0022398	-4.5919	-0.0025039	545.2751753217426	77.531	6.6682	77.531	74.796	81.464	0					415	164	6	0	0	0	0.85955	1	9410	9410		56.721	3.7844	1	63206000	+		74791	28799	52174	52259	82190	82190					-0.0017368685910241766
SPFDVPVDIT	10	Unmodified	_SPFDVPVDIT_					0	0	0		ENST00000593176.1_1_17:33464206-33469153:-|nuORF;ENSG00000073536|ENST00000442241|NLE1	ENST00000593176.1_1_17:33464206-33469153:-|nuORF	ENST00000593176.1_1_17:33464206-33469153:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2762451171875	2	545.276772	1088.53899	-0.96677	-0.00052716	-3.4439	-0.0018779	-4.4107	-0.0024051	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	1.0508	1	9674	9674		39.253	6.4404	1	52905000			74792	1508	52175	52260	82191	82191					-0.0017368685910241766
SPFHPASPM	9	Unmodified	_SPFHPASPM_					0	0	0		ENST00000478299.1_1_1:12091250-12091862:+|nuORF;ENST00000466860.5_1_1:12090076-12091862:+|nuORF;ENST00000498685.5_1_1:12089781-12091862:+|nuORF;ENSG00000116691|ENST00000235332|MIIP	ENST00000478299.1_1_1:12091250-12091862:+|nuORF	ENST00000478299.1_1_1:12091250-12091862:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7770690917969	2	485.726195	969.437837	-0.65462	-0.00031797	2.3339	0.0011336	1.6792	0.00081565	485.72794569092343	29.761	0.52713	29.769	29.514	30.041	0.0077877					14	12	2	0	0	0	0.024354	1	1861	1861		38.806	32.071	1	37185			74793	3567	52176	52261	82192	82192					-0.048104170427905046
SPFHSHLSTY	10	Unmodified	_SPFHSHLSTY_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	588.3300170898438	2	588.277638	1174.54072	-0.71714	-0.00042187	-2.3839	-0.0014024	-3.101	-0.0018242	588.2767159986023	42.023	0.46027	41.793	41.472	41.932	-0.23029					16	12	2	0	0	0	0.03519	1	3724	3724		25.574	7.312	1	202910			74794	6747	52177	52262	82193	82193					-0.03956633050461278
SPFLVLAI	8	Unmodified	_SPFLVLAI_					0	0	0		ENSG00000162551|ENST00000374840|ALPL	ENSG00000162551|ENST00000374840|ALPL	ENSG00000162551|ENST00000374840|ALPL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.2662658691406	2	430.268022	858.521491	-1.1459	-0.00049303	-3.6263	-0.0015603	-4.7722	-0.0020533	430.2663551462506	20.539	1.1179	20.539	20.274	21.392	0					53	22	4	0	0	0	0.67787	1	571	571		69.093	10.311	1	1154700			74795	6952	52178	52263	82194	82194					0.08657062396559922
SPFPPLAPQ	9	Unmodified	_SPFPPLAPQ_					0	0	0		ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.777587890625	2	477.258185	952.501818	-0.8062	-0.00038477	4.4151	0.0021072	3.6089	0.0017224	477.26343787104923	27.242	0.58261	27.323	27.064	27.646	0.081293					27	15	3	0	0	0	0.023817	1	1402	1402		51.335	0	1	462500			74796	13263	52179	52264	82195	82195					0.023666863858124998
SPFPVELR	8	Unmodified	_SPFPVELR_					0	0	0			REV__nc|ENSG00000172183|Q96AZ6-2|ISG20	REV__nc|ENSG00000172183|Q96AZ6-2|ISG20	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.7635192871094	2	472.763635	943.512717	0.023423	1.1073E-05	1.2788	0.00060457	1.3022	0.00061564	472.764025159419	101.93	0.53195	101.76	101.52	102.05	-0.17178					22	12	3	0	0	0	0.93274	1	12649	12649		47.916	0	1	200550	+		74797	36941	52180	52265	82196	82196					0.03870088760095314
SPFRVPAPSRQ	11	Unmodified	_SPFRVPAPSRQ_					0	0	0			REV__ENST00000318217.9_1_17:30821488-30821716:-|nuORF	REV__ENST00000318217.9_1_17:30821488-30821716:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2122497558594	3	414.563161	1240.66765	-0.084593	-3.5069E-05	0.41663	0.00017272	0.33204	0.00013765	414.56325497674317	28.222	0.24556	28.218	28.04	28.286	-0.0042019					7	5	2	0	0	0	0.024746	1	1599	1599		21.032	4.5024	1	20176	+		74798	30303	52181	52266	82197	82197					0.056947128945239456
SPFSHGSVL	9	Unmodified	_SPFSHGSVL_					0	0	0			REV__ENST00000526600.1_1_11:12961545-12961695:+|nuORF	REV__ENST00000526600.1_1_11:12961545-12961695:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.265625	2	465.737617	929.460681	-0.19056	-8.8749E-05	0.061175	2.8492E-05	-0.12938	-6.0257E-05	465.73748776988896	46.069	0.74907	45.808	45.451	46.2	-0.26118					51	19	4	0	0	0	0.024457	1	4459	4459		29.15	3.6994	1	1261900	+		74799	34453	52182	52267	82198	82198					-0.006870746536492334
SPFSKIRDKM	10	Unmodified	_SPFSKIRDKM_					0	0	0		nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF;RAB11FIP5|p.R277Kfs*3|1|0.15|ENSG00000135631|chr2:73088911-73088918|GGTGAGCG/-|frameshift_variant	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	nc|ENSG00000135631|Q9BXF6|RAB11FIP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5535888671875	3	403.553386	1207.63833	-0.19596	-7.9082E-05	0.55006	0.00022198	0.35409	0.00014289	403.55349037078935	29.579	1.3084	29.334	29.055	30.363	-0.24524					77	30	4	0	0	0	1.0909	1	1817	1817		33.922	1.1711	1	3168200			74800	4915	52183	52268	82199	82199					0.04281432554012099
SPFSLKKPT	9	Unmodified	_SPFSLKKPT_					0	0	0		TMEM132B|p.S21Ifs*71|1|0.31|ENSG00000139364|chr12:125349459-125349474|GAGTCGAGGGATTGTG/-|frameshift_variant	TMEM132B|p.S21Ifs*71|1|0.31|ENSG00000139364|chr12:125349459-125349474|GAGTCGAGGGATTGTG/-|frameshift_variant	TMEM132B|p.S21Ifs*71|1|0.31|ENSG00000139364|chr12:125349459-125349474|GAGTCGAGGGATTGTG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.30560302734375	2	502.792392	1003.57023	0.24588	0.00012363	2.1677	0.0010899	2.4136	0.0012135	502.7932148158542	52.602	0.81564	52.455	52.132	52.948	-0.14723					31	20	2	0	0	0	0.024427	1	5597	5597		42.396	6.7778	1	353300			74801	38084	52184	52269	82200	82200					0.06858930965665877
SPFTIVTPN	9	Unmodified	_SPFTIVTPN_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;CELSR2|p.V2208Lfs*36|1|0.34|ENSG00000143126|chr1:109268998-109268999|TG/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.3006896972656	2	488.260925	974.507297	0.26155	0.00012771	3.1514	0.0015387	3.413	0.0016664	488.26224734768476	58.657	0.65926	58.47	58.206	58.866	-0.18705					39	17	3	0	0	0	0.024427	1	6598	6598		34.173	23.307	1	1342300			74802	247	52185	52270	82201	82201					0.019023651776251427
SPGAAAVVKGL	11	Unmodified	_SPGAAAVVKGL_					0	0	0		ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77099609375	2	485.290017	968.565481	-0.069254	-3.3609E-05	1.2162	0.00059023	1.147	0.00055662	485.2906220307699	72.635	0.45568	72.635	72.454	72.91	0					14	10	2	0	0	0	0.024795	1	8831	8831		21.686	0	1	265750			74803	9272	52186	52271	82202	82202					0.07994046822898326
SPGAGEGLGI	10	Unmodified	_SPGAGEGLGI_					0	0	0			REV__ZNF629|p.D772Vfs*65|1|0.34|ENSG00000102870|chr16:30782013-30782013|T/-|frameshift_variant	REV__ZNF629|p.D772Vfs*65|1|0.34|ENSG00000102870|chr16:30782013-30782013|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2563781738281	2	429.2218	856.429047	-0.73455	-0.00031529	0.84283	0.00036176	0.10828	4.6475E-05	429.2220102739285	45.07	0.89156	44.921	44.557	45.449	-0.1488					63	25	3	0	0	0	0.03519	1	4273	4273		23.042	0	1	2624200	+		74804	21333	52187	52272	82203	82203					-0.004910674076199939
SPGAGRLLG	9	Unmodified	_SPGAGRLLG_					0	0	0		ENST00000432802.6_1_20:25028753-25038655:-|nuORF	ENST00000432802.6_1_20:25028753-25038655:-|nuORF	ENST00000432802.6_1_20:25028753-25038655:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2406005859375	2	414.240327	826.466101	-0.32561	-0.00013488	0.82557	0.00034199	0.49996	0.0002071	414.24058091333234	33.898	1.4125	33.954	33.577	34.989	0.056568					67	35	4	0	0	0	0.35646	1	2453	2453		68.787	0.30212	1	3415000			74805	14211	52188	52273	82204	82204					0.04592648928814924
SPGAGWLW	8	Unmodified	_SPGAGWLW_					0	0	0			REV__ENST00000342115.8_1_1:110174007-110174325:+|nuORF	REV__ENST00000342115.8_1_1:110174007-110174325:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2475891113281	2	437.216321	872.418088	-0.20629	-9.0192E-05	-0.84587	-0.00036983	-1.0522	-0.00046002	437.21598572530854	34.97	0.58802	35.017	34.719	35.308	0.047043					26	15	3	0	0	0	0.027866	1	2599	2599		33.516	0	1	124250	+		74806	30643	52189	52274	82205	82205					-0.02322424991234584
SPGAHPLALL	10	Unmodified	_SPGAHPLALL_					0	0	0			REV__ENST00000560192.5_1_15:91447355-91448509:+|nuORF	REV__ENST00000560192.5_1_15:91447355-91448509:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.2840270996094	2	488.284734	974.554916	0.41362	0.00020196	-1.4227	-0.00069469	-1.0091	-0.00049273	488.28412755468884	55.179	1.2032	55.179	54.689	55.892	0					103	33	5	0	0	0	0.52589	2	6104	6104;6128		85.359	10.668	1	52978000	+		74807	35139	52190	52275	82206;82207	82206					0.06662064168460802
SPGAHPLALL	10	Unmodified	_SPGAHPLALL_					0	0	0			REV__ENST00000560192.5_1_15:91447355-91448509:+|nuORF	REV__ENST00000560192.5_1_15:91447355-91448509:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2845764160156	2	488.284734	974.554916	-0.19056	-9.3045E-05	-0.85386	-0.00041693	-1.0444	-0.00050997	488.2844135114245	55.255	1.1397	55.105	54.608	55.747	-0.15036					109	31	6	0	0	0	0.62679	2	6079	6079;6104		73.975	0	1	54329000	+		74808	35139	52190	52275	82208;82209	82208					0.06662064168460802
SPGAHPLALL	10	Unmodified	_SPGAHPLALL_					0	0	0			REV__ENST00000560192.5_1_15:91447355-91448509:+|nuORF	REV__ENST00000560192.5_1_15:91447355-91448509:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.28375244140625	2	488.284734	974.554916	-1.0073	-0.00049186	0.09609	4.6919E-05	-0.91124	-0.00044494	488.28483154213905	55	1.0817	55.098	54.626	55.707	0.098015					98	29	5	0	0	0	0.52589	1	6026	6026		85.359	5.9085	1	53805000	+		74809	35139	52190	52275	82210	82210					0.06662064168460802
SPGARGRV	8	Unmodified	_SPGARGRV_					0	0	0			REV__nc|ENSG00000134222|Q6PGN9|PSRC1	REV__nc|ENSG00000134222|Q6PGN9|PSRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8948059082031	2	400.230294	798.446034	2.8165	0.0011272	-3.9148	-0.0015668	-1.0983	-0.00043956	400.2285478933716	26.102	0.87852	26.184	25.793	26.671	0.081293					29	20	2	0	0	0	0.027866	1	1274	1274		47.916	34.956	1	126620	+		74810	36677	52191	52276	82211	82211					0.03874897988862358
SPGAVVPGIL	10	Unmodified	_SPGAVVPGIL_					0	0	0		ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2585754394531	2	455.273835	908.533118	0.10647	4.8475E-05	-3.2375	-0.001474	-3.131	-0.0014255	455.2722322416582	33.783	0.95854	33.783	33.521	34.479	0					32	24	2	0	0	0	0.03519	1	2493	2493		21.96	0	1	245960			74811	17385	52192	52277	82212	82212					0.0751925941991658
SPGAVVPGIL	10	Unmodified	_SPGAVVPGIL_					0	0	0		ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.2607727050781	2	455.273835	908.533118	-0.46817	-0.00021315	-2.1223	-0.00096622	-2.5905	-0.0011794	455.27274083042516	39.059	0.49742	38.96	38.737	39.234	-0.098755					15	13	2	0	0	0	0.03519	1	3298	3298		35.618	0	1	96794			74812	17385	52192	52277	82213	82213					0.0751925941991658
SPGDALRR	8	Unmodified	_SPGDALRR_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.2409362792969	2	436.240858	870.467164	-0.029825	-1.3011E-05	-0.12404	-5.4111E-05	-0.15386	-6.7122E-05	436.24061971834914	32.072	1.0881	32.135	31.64	32.728	0.062885					48	27	3	0	0	0	1.0009	1	2144	2144		37.159	0	1	1480000			74813	1195	52193	52278	82214	82214					0.026748632977046327
SPGDALRR	8	Unmodified	_SPGDALRR_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	436.240858	870.467164	-0.17044	-7.4352E-05	0.017109	7.4635E-06	-0.15333	-6.6888E-05	436.2407503624012	32.28	0.61986	32.28	31.949	32.569	0	0.074509	3.1184E-06	NaN	37.159	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1383400			74814	1195	52193	52278							0.026748632977046327
SPGDALRR	8	Unmodified	_SPGDALRR_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.240858	870.467164	-0.265	-0.00011561	0.11694	5.1013E-05	-0.14807	-6.4592E-05	436.2408153986071	32.19	0.65116	32.202	31.943	32.594	0.011799	-0.0038233	9.0218E-05	NaN	37.159	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1212400			74815	1195	52193	52278							0.026748632977046327
SPGDSVIR	8	Unmodified	_SPGDSVIR_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.5631103515625	2	415.721967	829.429381	-0.17134	-7.1231E-05	-0.1152	-4.7892E-05	-0.28654	-0.00011912	415.7218810200432	28.405	0.5902	28.401	28.157	28.747	-0.0042019					42	13	4	0	0	0	0.027866	1	1635	1635		58.782	24.609	1	1063500			74816	7346	52194	52279	82215	82215					0.007843523122346596
SPGEFDALL	9	Unmodified	_SPGEFDALL_					0	0	0			REV__ENSG00000086544|ENST00000263370|ITPKC	REV__ENSG00000086544|ENST00000263370|ITPKC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2605895996094	2	474.737283	947.460012	0.031565	1.4985E-05	-3.7607	-0.0017853	-3.7291	-0.0017704	474.73514171018854	43.368	0.54617	43.229	43.063	43.609	-0.13929					19	14	2	0	0	0	0.024323	1	4069	4069		53.351	16.192	1	66749	+		74817	20774	52195	52280	82216	82216					-0.015819140933786002
SPGELCLVQ	9	Unmodified	_SPGELCLVQ_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6;TDRD6|p.A477Sfs*21|1|0.19|ENSG00000180113|chr6:46689552-46689553|-/C|frameshift_variant	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.77532958984375	2	473.239135	944.463718	0.49354	0.00023356	-2.5547	-0.001209	-2.0612	-0.00097542	473.23805954711526	37.213	0.45509	37.02	36.774	37.229	-0.193					23	11	3	0	0	0	0.024354	1	2941	2941		30.504	0	1	409310			74818	8962	52196	52281	82217	82217					-0.010735675911746512
SPGERATL	8	Unmodified	_SPGERATL_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.56292724609375	2	415.721967	829.429381	-0.24669	-0.00010255	0.10651	4.428E-05	-0.14018	-5.8274E-05	415.7218773197835	28.457	0.79931	28.457	28.191	28.99	0					39	18	3	0	0	0	0.027866	1	1657	1657		74.255	15.473	1	1144200			74819	18679	52197	52282	82218	82218					0.00784352312223291
SPGERATL	8	Unmodified	_SPGERATL_					0	0	0		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7	nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000241351|P04433|IGKV3-11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	416.5628662109375	2	415.721967	829.429381	-0.26926	-0.00011194	0.17032	7.0807E-05	-0.098937	-4.113E-05	415.7218055829452	28.023	0.70287	28.104	27.871	28.574	0.080811					34	16	3	0	0	0	0.027866	1	1566	1566		54.776	10.66	1	965280			74820	18679	52197	52282	82219	82219					0.00784352312223291
SPGFALGR	8	Unmodified	_SPGFALGR_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|126|2|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|126|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	403.2376708984375	2	402.72177	803.428987	1.9748	0.00079528	2.3196	0.00093414	4.2943	0.0017294	402.7227127986963	31.31	3.801	31.379	28.933	32.734	0.068962					145	94	3	0	0	0	0.027866	1	1751	1751		17.365	0	1	378290	+		74821	37689	52198	52283	82220	82220					0.019409773830375343
SPGFIPLLW	9	Unmodified	_SPGFIPLLW_					0	0	0		nc|ENSG00000160207|O75031-2|HSF2BP;ENSG00000160207|ENST00000291560|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7960205078125	2	515.292028	1028.5695	-0.038494	-1.9836E-05	2.7366	0.0014102	2.6981	0.0013903	515.2932138841833	24.103	0.74937	23.887	23.384	24.134	-0.2151					23	16	2	0	0	0	0.024541	1	991	991		20.482	7.5226	1	471660			74822	6790	52199	52284	82221	82221					0.05636136316616103
SPGFIPLLW	9	Unmodified	_SPGFIPLLW_					0	0	0		nc|ENSG00000160207|O75031-2|HSF2BP;ENSG00000160207|ENST00000291560|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7962646484375	2	515.292028	1028.5695	1.9409	0.0010001	1.0731	0.00055297	3.014	0.0015531	515.2922862554384	24.001	0.57279	23.82	23.411	23.983	-0.18089					20	12	3	0	0	0	0.024517	1	948	948		19.36	5.5846	1	438960			74823	6790	52199	52284	82222	82222					0.05636136316616103
SPGFIPLLW	9	Unmodified	_SPGFIPLLW_					0	0	0		nc|ENSG00000160207|O75031-2|HSF2BP;ENSG00000160207|ENST00000291560|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.292028	1028.5695	-0.69219	-0.00035668	3.1946	0.0016461	2.5024	0.0012894	515.2936081435108	23.844	0.55887	23.844	23.607	24.166	0	0.026073	0.00032957	NaN	19.36	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104810			74824	6790	52199	52284							0.05636136316616103
SPGFIPLLW	9	Unmodified	_SPGFIPLLW_					0	0	0		nc|ENSG00000160207|O75031-2|HSF2BP;ENSG00000160207|ENST00000291560|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.292028	1028.5695	-0.89228	-0.00045978	3.6542	0.001883	2.7619	0.0014232	515.2939112267134	23.831	0.65005	23.778	23.608	24.258	-0.053724	-0.039887	0.00080326	NaN	19.36	21	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86962			74825	6790	52199	52284							0.05636136316616103
SPGFYTGKP	9	Unmodified	_SPGFYTGKP_					0	0	0		ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7735900878906	2	477.239993	952.465432	0.65962	0.0003148	2.5804	0.0012315	3.2401	0.0015463	477.24125454233445	69.372	0.77612	69.372	69.056	69.832	0					39	19	3	0	0	0	0.023635	1	8347	8347		39.253	2.0937	1	230310			74826	8528	52200	52285	82223	82223					-0.01270190510899738
SPGGAGGG	8	Unmodified	_SPGGAGGG_					0	0	0		nc|ENSG00000130202|Q92692-2|NECTIN2;ENSG00000197245|ENST00000374268|FAM110D	nc|ENSG00000130202|Q92692-2|NECTIN2	nc|ENSG00000130202|Q92692-2|NECTIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.321533203125	1	559.247066	558.239789	-0.20043	-0.00011209	-1.8872	-0.0010554	-2.0877	-0.0011675	559.2481997768498	67.877	0.20114	67.588	67.47	67.671	-0.28835					6	4	2	0	0	0	0.027866	1	8087	8087		3.9852	0	1	26219			74827	18265	52201	52286	82224	82224					-0.057000949102871346
SPGGKPIRI	9	Unmodified	_SPGGKPIRI_					0	0	0			REV__nc|ENSG00000197128|Q68DY9-2|ZNF772	REV__nc|ENSG00000197128|Q68DY9-2|ZNF772	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7718505859375	2	462.784902	923.55525	-0.0022839	-1.057E-06	0.9367	0.00043349	0.93442	0.00043244	462.78639351271835	23.134	0.24648	23.21	23.026	23.272	0.076241					7	5	2	0	0	0	0.024381	1	827	827		37.159	20.686	1	118720	+		74828	28269	52202	52287	82225	82225					0.09041483888313451
SPGGPLLVIG	10	Unmodified	_SPGGPLLVIG_					0	0	0		ENST00000442865.1_1_7:29638488-29724509:-|nuORF;ENST00000426767.1_1_7:29690917-29724509:-|nuORF	ENST00000442865.1_1_7:29638488-29724509:-|nuORF	ENST00000442865.1_1_7:29638488-29724509:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.2608337402344	2	455.273835	908.533118	0.20693	9.4209E-05	-2.4377	-0.0011098	-2.2308	-0.0010156	455.2724317269135	39.001	0.45527	39.001	38.833	39.288	0					17	12	2	0	0	0	0.03519	1	3305	3305		44.117	0	1	80195			74829	14095	52203	52288	82226	82226					0.07519259419905211
SPGGPLLVIG	10	Unmodified	_SPGGPLLVIG_					0	0	0		ENST00000442865.1_1_7:29638488-29724509:-|nuORF;ENST00000426767.1_1_7:29690917-29724509:-|nuORF	ENST00000442865.1_1_7:29638488-29724509:-|nuORF	ENST00000442865.1_1_7:29638488-29724509:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2607421875	2	455.273835	908.533118	-0.6362	-0.00028964	-0.28377	-0.00012919	-0.91997	-0.00041884	455.27331288084173	39.252	0.4623	39.276	39.063	39.526	0.023727					20	12	2	0	0	0	0.03519	1	3288	3288		60.972	42.648	1	94602			74830	14095	52203	52288	82227	82227					0.07519259419905211
SPGGPRAAV	9	Unmodified	_SPGGPRAAV_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814|SMTN;ENST00000460658.5_1_22:31492537-31495228:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.2248840332031	2	406.224677	810.434801	0.86327	0.00035068	-0.35756	-0.00014525	0.50572	0.00020543	406.2244692240027	26.929	1.1581	26.929	26.531	27.689	0					45	29	2	0	0	0	0.14024	2	1407	1407;1430		101.6	16.685	1	2303800			74831	9296	52204	52289	82228;82229	82228					0.022000758947001486
SPGGPRAAV	9	Unmodified	_SPGGPRAAV_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814|SMTN;ENST00000460658.5_1_22:31492537-31495228:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.22479248046875	2	406.224677	810.434801	0.10969	4.456E-05	0.22409	9.103E-05	0.33378	0.00013559	406.22466420061494	26.892	0.86243	26.879	26.415	27.277	-0.012983					36	21	2	0	0	0	0.19099	2	1395	1395;1414		90.37	16.115	1	2413000			74832	9296	52204	52289	82230;82231	82230					0.022000758947001486
SPGGPRAAV	9	Unmodified	_SPGGPRAAV_					0	0	0		ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814-6|SMTN;nc|ENSG00000183963|P53814|SMTN;ENST00000460658.5_1_22:31492537-31495228:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN	ENSG00000183963|ENST00000333137|SMTN	ENSG00000183963|ENST00000333137|SMTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.2250671386719	2	406.224677	810.434801	1.0534	0.00042791	-0.52047	-0.00021143	0.53291	0.00021648	406.22436858021285	26.6	1.0328	26.682	26.249	27.282	0.081293					40	25	2	0	0	0	0.057894	1	1314	1314		125.81	17.727	1	1979300			74833	9296	52204	52289	82232	82232					0.022000758947001486
SPGHAPVPGF	10	Unmodified	_SPGHAPVPGF_					0	0	0		ENST00000420294.1_2_2:99529371-99552551:-|nuORF	ENST00000420294.1_2_2:99529371-99552551:-|nuORF	ENST00000420294.1_2_2:99529371-99552551:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.77081298828125	2	483.245609	964.476666	-0.41393	-0.00020003	4.2591	0.0020582	3.8452	0.0018582	483.24746745906515	43.118	2.3933	43.118	41.921	44.314	0					136	67	5	0	0	0	0.03519	1	4024	4024		34.173	12.213	1	1181100			74834	13970	52205	52290	82233	82233					-0.0069936841675826145
SPGHRLLP	8	Unmodified	_SPGHRLLP_					0	0	0		ENST00000316586.8_1_2:242434694-242435003:-|nuORF	ENST00000316586.8_1_2:242434694-242435003:-|nuORF	ENST00000316586.8_1_2:242434694-242435003:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.75640869140625	2	438.756144	875.497735	0.53429	0.00023442	-0.29125	-0.00012779	0.24305	0.00010664	438.75589872562495	41.148	1.0366	41.025	40.762	41.798	-0.12317					70	28	4	0	0	0	0.93274	1	3653	3653		47.916	0	1	3270000			74835	12148	52206	52291	82234	82234					0.05500641682760943
SPGKARRGPD	10	Unmodified	_SPGKARRGPD_					0	0	0		nc|ENSG00000139998|P59190-2|RAB15	nc|ENSG00000139998|P59190-2|RAB15	nc|ENSG00000139998|P59190-2|RAB15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8194580078125	2	520.783422	1039.55229	-0.138	-7.187E-05	2.8303	0.001474	2.6923	0.0014021	520.7849654551468	71.33	0.90695	71.341	70.896	71.803	0.010735					34	23	2	0	0	0	0.03519	1	8588	8588		58.23	6.8945	1	1488800			74836	18330	52207	52292	82235	82235					0.03409608763513461
SPGKAWIW	8	Unmodified	_SPGKAWIW_					0	0	0		ENST00000228506.7_1_12:121137680-121137947:+|nuORF	ENST00000228506.7_1_12:121137680-121137947:+|nuORF	ENST00000228506.7_1_12:121137680-121137947:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7550354003906	2	472.75307	943.491587	0.91414	0.00043216	-0.18708	-8.8443E-05	0.72706	0.00034372	472.7530210484187	39.59	1.3676	39.59	39.219	40.587	0					103	38	5	0	0	0	0.81662	1	3415	3415		57.811	13.434	1	14314000			74837	11220	52208	52293	82236	82236					0.01758123451213578
SPGKHGPK	8	Unmodified	_SPGKHGPK_					0	0	0		ENSG00000205863|ENST00000382137|C1QTNF9B;ENSG00000240654|ENST00000332018|C1QTNF9	ENSG00000205863|ENST00000382137|C1QTNF9B	ENSG00000205863|ENST00000382137|C1QTNF9B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9227294921875	2	404.22722	806.439886	0.59386	0.00024005	0.32384	0.00013091	0.9177	0.00037096	404.227165037953	26.111	0.60868	25.943	25.544	26.153	-0.16816					26	17	2	0	0	0	0.027866	1	1302	1302		3.1592	0	1	244740			74838	10452	52209	52294	82237	82237					0.02892379757327035
SPGKKKMR	8	Unmodified	_SPGKKKMR_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7843322753906	2	466.278929	930.543305	-0.99847	-0.00046557	-4.2158	-0.0019657	-5.2142	-0.0024313	466.27654216531437	44.487	0.3436	44.487	44.348	44.691	0					17	9	3	0	0	0	0.027866	1	4250	4250		25.45	3.7478	1	426200	+		74839	24340	52210	52295	82238	82238					0.07525543873487095
SPGKKKMR	8	Unmodified	_SPGKKKMR_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.278929	930.543305	-0.78117	-0.00036424	-5.1797	-0.0024152	-5.9609	-0.0027794	466.27635607777694	44.588	0.54115	44.483	44.203	44.744	-0.10468	-0.020731	-0.00020228	NaN	35.618	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301240	+		74840	24340	52210	52295							0.07525543873487095
SPGKKKMR	8	Unmodified	_SPGKKKMR_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.278929	930.543305	-0.66941	-0.00031213	-5.0088	-0.0023355	-5.6782	-0.0026476	466.27632474837253	44.77	0.39143	44.518	44.318	44.709	-0.25252	0.013875	-4.2911E-05	NaN	35.618	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260160	+		74841	24340	52210	52295							0.07525543873487095
SPGKKKMR	8	Unmodified	_SPGKKKMR_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	466.278929	930.543305	-1.0328	-0.00048155	-4.8085	-0.0022421	-5.8413	-0.0027237	466.2765998866526	44.721	0.46132	44.51	44.292	44.754	-0.21109	0.0066272	0.00014387	NaN	35.618	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281190	+		74842	24340	52210	52295							0.07525543873487095
SPGLDQHVAF	10	Unmodified	_SPGLDQHVAF_					0	0	0			REV__ENST00000577700.5_1_7:45022669-45022849:-|nuORF	REV__ENST00000577700.5_1_7:45022669-45022849:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7498168945312	2	535.766906	1069.51926	-0.24271	-0.00013003	1.5769	0.00084487	1.3342	0.00071484	535.7674251739401	32.184	0.92431	31.991	31.237	32.162	-0.19261					29	21	2	0	0	0	0.03519	1	2183	2183		27.882	20.192	1	81583	+		74843	35480	52211	52296	82239	82239					-0.012720180792030078
SPGLKSVL	8	Unmodified	_SPGLKSVL_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.7475280761719	2	400.747453	799.480354	0.59944	0.00024022	-0.4116	-0.00016495	0.18784	7.5276E-05	400.7471604294842	47.247	0.6973	47.151	46.897	47.594	-0.096653					43	18	4	0	0	0	0.32941	1	4616	4616		107.01	5.4068	1	1434200			74844	3568	52212	52297	82240	82240					0.07259301357089498
SPGLKSVL	8	Unmodified	_SPGLKSVL_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	400.747453	799.480354	1.1193	0.00044857	-1.0075	-0.00040377	0.11178	4.4797E-05	400.7469265961937	47.283	0.58179	47.283	47.04	47.622	0	0.030873	-0.00015764	NaN	107.01	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1082100			74845	3568	52212	52297							0.07259301357089498
SPGLKSVL	8	Unmodified	_SPGLKSVL_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	400.747453	799.480354	0.85811	0.00034389	-0.77028	-0.00030869	0.087829	3.5197E-05	400.7470212414094	47.471	0.61683	47.317	47.052	47.669	-0.15301	0.065162	3.252E-05	NaN	107.01	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158100			74846	3568	52212	52297							0.07259301357089498
SPGLKSVL	8	Unmodified	_SPGLKSVL_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	400.747453	799.480354	1.9665	0.00078808	-1.8319	-0.00073414	0.1346	5.3942E-05	400.7465879756649	47.281	0.55332	47.34	47.032	47.585	0.059097	0.088123	-0.00081837	NaN	107.01	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135500			74847	3568	52212	52297							0.07259301357089498
SPGLKSVL	8	Unmodified	_SPGLKSVL_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	400.747453	799.480354	1.2871	0.0005158	-1.0443	-0.00041852	0.24276	9.7287E-05	400.74691475087974	47.528	0.62407	47.258	46.977	47.601	-0.26939	0.0061571	-0.00018714	NaN	107.01	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1362300			74848	3568	52212	52297							0.07259301357089498
SPGLKSVL	8	Unmodified	_SPGLKSVL_					0	0	0		SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;nc|ENSG00000116698|Q92540-5|SMG7;SMG7|p.Q973Rfs*127|1|0.27|ENSG00000116698|chr1:183549852-183549852|C/-|frameshift_variant;nc|ENSG00000116698|Q92540-4|SMG7;ENSG00000116698|ENST00000688051|SMG7;SMG7|p.D583Efs*21|1|0.06|ENSG00000116698|chr1:183542408-183542409|-/GGTTCTCT|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	SMG7|p.A971Vfs*12|1|0.32|ENSG00000116698|chr1:183549851-183549852|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	400.747453	799.480354	-0.43103	-0.00017273	0.74984	0.0003005	0.31881	0.00012776	400.7476125388179	47.357	0.63448	47.164	46.85	47.484	-0.19387	-0.088759	0.0012509	NaN	107.01	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129300			74849	3568	52212	52297							0.07259301357089498
SPGLLFLFD	9	Unmodified	_SPGLLFLFD_					0	0	0		ENST00000522504.5_1_8:140743306-140893377:-|nuORF	ENST00000522504.5_1_8:140743306-140893377:-|nuORF	ENST00000522504.5_1_8:140743306-140893377:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.23223876953125	2	504.773668	1007.53278	-0.90054	-0.00045457	-3.7383	-0.001887	-4.6388	-0.0023416	504.7714497956737	44.635	0.89444	44.39	43.94	44.835	-0.2444					29	23	2	0	0	0	0.024427	1	4195	4195		42.396	19.354	1	309470			74850	16029	52213	52298	82241	82241					0.029318397000338337
SPGLLQPPY	9	Unmodified	_SPGLLQPPY_					0	0	0			REV__ENSG00000161640|ENST00000447370|SIGLEC11	REV__ENSG00000161640|ENST00000447370|SIGLEC11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.26214599609375	2	486.263468	970.512382	-0.61828	-0.00030065	-1.9662	-0.00095611	-2.5845	-0.0012568	486.2622568517632	24.273	1.1864	24.273	23.866	25.052	0					67	26	4	0	0	0	0.90698	1	1045	1045		31.955	0	1	1071300	+		74851	25391	52214	52299	82242	82242					0.025946690402292916
SPGLLRQLI	9	Unmodified	_SPGLLRQLI_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7664489746094	2	498.813659	995.612765	1.0408	0.00051917	-1.0564	-0.00052693	-0.015546	-7.7545E-06	498.8127637118122	36.891	0.43508	36.891	36.685	37.12	0					15	10	2	0	0	0	0.024427	1	2935	2935		19.997	0	1	110330	+		74852	20777	52215	52300	82243	82243					0.114783260938907
SPGLLSMLN	9	Unmodified	_SPGLLSMLN_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-3|POLR3E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2560729980469	2	466.249503	930.484453	0.30485	0.00014214	-0.46016	-0.00021455	-0.15531	-7.2413E-05	466.2493017413184	36.643	0.40659	36.681	36.478	36.884	0.038044					14	10	2	0	0	0	0.024405	1	2900	2900		14.865	0	1	77123	+		74853	20233	52216	52301	82244	82244					0.0164302278848254
SPGLQPAH	8	Unmodified	_SPGLQPAH_					0	0	0		ENSG00000132386|ENST00000254722|SERPINF1;ENST00000572517.1_1_17:1679804-1680737:+|nuORF	ENSG00000132386|ENST00000254722|SERPINF1	ENSG00000132386|ENST00000254722|SERPINF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.2274169921875	2	403.711402	805.408252	-0.3908	-0.00015777	1.3901	0.00056121	0.99933	0.00040344	403.71191826301794	25.243	0.77573	25.209	24.948	25.723	-0.034395					28	18	2	0	0	0	0.027866	1	1132	1132		4.3163	0	1	174000			74854	4601	52217	52302	82245	82245					-0.0022361299662634337
SPGLRARPP	9	Unmodified	_SPGLRARPP_					0	0	0		ENST00000360612.4_1_22:50357064-50357445:+|nuORF	ENST00000360612.4_1_22:50357064-50357445:+|nuORF	ENST00000360612.4_1_22:50357064-50357445:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.321533203125	2	475.780151	949.545748	0.10721	5.1007E-05	2.7369	0.0013022	2.8441	0.0013532	475.781294460651	66.121	0.83274	65.879	65.542	66.375	-0.24145					40	20	3	0	0	0	0.024523	1	7636	7636		15.642	0	1	368520			74855	12771	52218	52303	82246	82246					0.06895715602797736
SPGLYRVSI	9	Unmodified	_SPGLYRVSI_					0	0	0		nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.25921630859375	2	496.282192	990.549831	-0.19641	-9.7474E-05	3.3749	0.0016749	3.1785	0.0015774	496.28354613903764	20.322	0.92207	20.155	19.62	20.542	-0.16774					42	18	4	0	0	0	0.024447	1	580	580		40.778	3.6191	1	370340			74856	18464	52219	52304	82247	82247					0.054177603058633395
SPGNGTRRDL	10	Unmodified	_SPGNGTRRDL_					0	0	0		ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3116455078125	2	536.778336	1071.54212	-0.77065	-0.00041367	3.9495	0.00212	3.1788	0.0017063	536.7804423711815	34.317	0.77432	34.317	33.894	34.668	0					47	19	3	0	0	0	0.03519	1	2575	2575		23.523	0	1	960150			74857	10561	52220	52305	82248	82248					0.00921001038295799
SPGNGTRRDL	10	Unmodified	_SPGNGTRRDL_					0	0	0		ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3115844726562	2	536.778336	1071.54212	-0.51975	-0.00027899	3.6564	0.0019627	3.1366	0.0016837	536.7802698003803	34.114	0.92996	34.109	33.561	34.491	-0.0045624					51	23	3	0	0	0	0.03519	1	2534	2534		24.519	0	1	899230			74858	10561	52220	52305	82249	82249					0.00921001038295799
SPGNSKRG	8	Unmodified	_SPGNSKRG_					0	0	0		nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5511474609375	2	401.711934	801.409314	1.4376	0.00057748	2.1091	0.00084725	3.5467	0.0014247	401.71146120350375	23.609	1.1332	23.418	22.572	23.705	-0.19117					47	25	3	0	0	0	0.027866	1	885	885		7.1934	0	1	204410			74859	965	52221	52306	82250	82250					0.0006660137228209351
SPGNTSHFLQI	11	Unmodified	_SPGNTSHFLQI_					0	0	0		nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8874816894531	3	400.871772	1199.59349	0.2557	0.0001025	-0.26888	-0.00010778	-0.013173	-5.2809E-06	400.87157074947413	30.832	0.41101	30.832	30.55	30.961	0					16	9	2	0	0	0	0.024671	1	1989	1989		60.691	0	1	54482			74860	18762	52222	52307	82251	82251					0.0016732501235310338
SPGNTSHFLQI	11	Unmodified	_SPGNTSHFLQI_					0	0	0		nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.88775634765625	3	400.871772	1199.59349	0.15782	6.3265E-05	-0.91639	-0.00036736	-0.75858	-0.00030409	400.8713571273194	30.757	0.37232	30.769	30.499	30.871	0.011797					15	8	2	0	0	0	0.024301	1	1961	1961		53.013	22.444	1	64089			74861	18762	52222	52307	82252	82252					0.0016732501235310338
SPGNTSHFLQI	11	Unmodified	_SPGNTSHFLQI_					0	0	0		nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	400.871772	1199.59349	0.32398	0.00012988	-1.2119	-0.00048583	-0.88795	-0.00035596	400.87124060173977	30.877	0.54749	30.636	30.287	30.834	-0.24109	-0.035859	-0.00068765	NaN	53.013	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175400			74862	18762	52222	52307							0.0016732501235310338
SPGNTSHFLQI	11	Unmodified	_SPGNTSHFLQI_					0	0	0		nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	400.871772	1199.59349	0.58206	0.00023333	-1.6184	-0.00064877	-1.0363	-0.00041544	400.8710718375944	30.678	0.54715	30.5	30.243	30.791	-0.17818	-0.17153	-0.0011765	NaN	53.013	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125410			74863	18762	52222	52307							0.0016732501235310338
SPGNTSHFLQI	11	Unmodified	_SPGNTSHFLQI_					0	0	0		nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.871772	1199.59349	-0.47709	-0.00019125	0.077664	3.1133E-05	-0.39942	-0.00016012	400.8716418491775	30.774	0.5873	30.622	30.341	30.928	-0.15231	-0.049863	0.00086325	NaN	53.013	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184970			74864	18762	52222	52307							0.0016732501235310338
SPGPAGPTGKQ	11	Unmodified	_SPGPAGPTGKQ_					0	0	0		nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	nc|ENSG00000139219|P02458-1|COL2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.7612609863281	2	498.759081	995.503609	0.42535	0.00021215	4.2157	0.0021026	4.641	0.0023147	498.7610943725598	16.65	0.70108	16.502	16.378	17.079	-0.14753					33	24	2	0	0	0	1.0017	1	77	77		36.447	5.9431	1	169270			74865	5316	52223	52308	82253	82253					0.005676954037653559
SPGPKRGGI	9	Unmodified	_SPGPKRGGI_					0	0	0		ENST00000569360.1_1_16:30544282-30546013:-|nuORF	ENST00000569360.1_1_16:30544282-30546013:-|nuORF	ENST00000569360.1_1_16:30544282-30546013:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7803955078125	2	434.753601	867.49265	0.79509	0.00034567	-1.2148	-0.00052813	-0.41968	-0.00018246	434.753296106399	40.953	0.43148	40.829	40.584	41.016	-0.12317					15	11	2	0	0	0	0.024457	1	3646	3646		10.265	0	1	124860			74866	17003	52224	52309	82254	82254					0.053603378201387386
SPGPLLAQCL	10	Unmodified	_SPGPLLAQCL_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.7693176269531	2	499.770603	997.526652	0.21837	0.00010914	-3.3048	-0.0016516	-3.0864	-0.0015425	499.7688237935284	19.566	0.54169	19.405	19.183	19.725	-0.16079					24	10	3	0	0	0	1.1088	1	440	440		31.53	2.3803	1	337950	+		74867	36770	52225	52310	82255	82255					0.027789981968680877
SPGPLRLES	9	Unmodified	_SPGPLRLES_					0	0	0			REV__ENST00000589459.5_1_17:66423364-66453609:-|nuORF	REV__ENST00000589459.5_1_17:66423364-66453609:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2434387207031	2	478.263999	954.513445	0.97105	0.00046442	-0.30339	-0.0001451	0.66766	0.00031932	478.26337760426156	40.581	0.89825	40.469	40.055	40.954	-0.1124					65	24	5	0	0	0	0.024381	1	3539	3539		37.159	0	1	1401300	+		74868	35679	52226	52311	82256	82256					0.034368834091424105
SPGPSGRYGAS	11	Unmodified	_SPGPSGRYGAS_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.292724609375	2	518.246338	1034.47812	-0.79857	-0.00041386	0.49941	0.00025882	-0.29916	-0.00015504	518.2461897721607	31.922	0.47826	31.991	31.766	32.244	0.068962					19	11	3	0	0	0	0.024736	1	2104	2104		22.58	7.7148	1	167640			74869	4866	52227	52312	82257	82257					-0.03773779118682796
SPGPSRPGL	9	Unmodified	_SPGPSRPGL_					0	0	0		nc|ENSG00000076928|Q92888-4|ARHGEF1;ARHGEF1|p.A538Rfs*14|1|0.43|ENSG00000076928|chr19:41902644-41902653|TGTGCCTTCG/-|frameshift_variant;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;ENST00000600387.5_1_19:42392153-42392993:+|nuORF;ENST00000600274.5_1_19:42392153-42396275:+|nuORF	nc|ENSG00000076928|Q92888-4|ARHGEF1	nc|ENSG00000076928|Q92888-4|ARHGEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.2379455566406	2	434.237784	866.461016	-0.1493	-6.483E-05	0.25372	0.00011017	0.10442	4.5345E-05	434.2378940617191	34.484	1.7923	34.484	33.739	35.531	0					112	46	4	0	0	0	0.1158	5	2592	2579;2592;2605;2617;2631		107.01	0	1	7608200			74870	18084	52228	52313	82258;82259;82260;82261;82262	82259					0.022443450661853603
SPGPSRPGL	9	Unmodified	_SPGPSRPGL_					0	0	0		nc|ENSG00000076928|Q92888-4|ARHGEF1;ARHGEF1|p.A538Rfs*14|1|0.43|ENSG00000076928|chr19:41902644-41902653|TGTGCCTTCG/-|frameshift_variant;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;ENST00000600387.5_1_19:42392153-42392993:+|nuORF;ENST00000600274.5_1_19:42392153-42396275:+|nuORF	nc|ENSG00000076928|Q92888-4|ARHGEF1	nc|ENSG00000076928|Q92888-4|ARHGEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2379150390625	2	434.237784	866.461016	0.052996	2.3013E-05	0.0031763	1.3793E-06	0.056172	2.4392E-05	434.2377809813172	34.319	1.8761	34.314	33.412	35.288	-0.0045624					109	48	4	0	0	0	0.16638	4	2539	2539;2551;2563;2577		95.815	0	1	7425400			74871	18084	52228	52313	82263;82264;82265;82266	82263					0.022443450661853603
SPGPSRPGL	9	Unmodified	_SPGPSRPGL_					0	0	0		nc|ENSG00000076928|Q92888-4|ARHGEF1;ARHGEF1|p.A538Rfs*14|1|0.43|ENSG00000076928|chr19:41902644-41902653|TGTGCCTTCG/-|frameshift_variant;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;ENST00000600387.5_1_19:42392153-42392993:+|nuORF;ENST00000600274.5_1_19:42392153-42396275:+|nuORF	nc|ENSG00000076928|Q92888-4|ARHGEF1	nc|ENSG00000076928|Q92888-4|ARHGEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.23809814453125	2	434.237784	866.461016	-0.46118	-0.00020026	0.67293	0.00029221	0.21175	9.1949E-05	434.23807342612656	34.298	1.8944	34.349	33.571	35.465	0.050255					118	48	4	0	0	0	0.1158	4	2508	2508;2520;2531;2545		107.01	0	1	6995600			74872	18084	52228	52313	82267;82268;82269;82270	82267					0.022443450661853603
SPGPTPYC	8	Unmodified	_SPGPTPYC_					0	0	0			REV__ENST00000374843.8_1_6:32918343-32920806:-|nuORF	REV__ENST00000374843.8_1_6:32918343-32920806:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.17596435546875	2	411.178546	820.34254	-0.13298	-5.4677E-05	-1.3269	-0.00054557	-1.4598	-0.00060025	411.17786175024617	91.92	0.47862	91.797	91.499	91.978	-0.12305					15	10	2	0	0	0	0.027866	1	11305	11305		26.796	5.0938	1	45612	+		74873	31311	52229	52314	82271	82271					-0.07481770233846419
SPGPTRQL	8	Unmodified	_SPGPTRQL_					0	0	0			REV__ENSG00000283439|ENST00000636696|SPEM3	REV__ENSG00000283439|ENST00000636696|SPEM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7398681640625	2	428.237784	854.461016	-0.16917	-7.2446E-05	2.0203	0.00086516	1.8511	0.00079271	428.2387615927948	22.182	0.42586	21.997	21.764	22.189	-0.18539					13	8	2	0	0	0	0.027866	1	773	773		37.159	0.13063	1	35185	+		74874	29245	52230	52315	82272	82272					0.027963450661786737
SPGPWFYP	8	Unmodified	_SPGPWFYP_					0	0	0			REV__ENST00000547015.5_2_12:56324985-56330219:+|nuORF	REV__ENST00000547015.5_2_12:56324985-56330219:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.2602233886719	2	475.723978	949.433404	0.0086389	4.1098E-06	-0.50126	-0.00023846	-0.49262	-0.00023435	475.72358415726893	43.509	0.50797	43.397	43.145	43.653	-0.11253					21	13	2	0	0	0	0.027866	1	3996	3996		26.796	7.4361	1	265910	+		74875	34857	52231	52316	82273	82273					-0.04333558194048237
SPGQINQVRPK	11	Unmodified	_SPGQINQVRPK_					0	0	0		nc|ENSG00000198625|O15151-5|MDM4;ENSG00000198625|ENST00000367182|MDM4;nc|ENSG00000198625|O15151-3|MDM4;nc|ENSG00000198625|O15151-2|MDM4;ENST00000470797.5_1_1:204494646-204501451:+|nuORF	nc|ENSG00000198625|O15151-5|MDM4	nc|ENSG00000198625|O15151-5|MDM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2474060058594	3	408.566683	1222.67822	0.77275	0.00031572	3.8402	0.001569	4.6129	0.0018847	408.5677624372897	37.134	0.47755	37.071	36.828	37.305	-0.063385					26	12	3	0	0	0	0.024771	1	3022	3022		41.08	0	1	135780			74876	10158	52232	52317	82274	82274					0.07578695548932046
SPGQLHSPI	9	Unmodified	_SPGQLHSPI_					0	0	0		ENSG00000186350|ENST00000481739|RXRA;ENST00000484822.1_1_9:137293491-137293848:+|nuORF	ENSG00000186350|ENST00000481739|RXRA	ENSG00000186350|ENST00000481739|RXRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.7667541503906	2	468.250892	934.48723	0.40035	0.00018746	2.0973	0.00098206	2.4977	0.0011695	468.25192656558244	36.873	0.31947	36.911	36.721	37.041	0.038044					16	7	3	0	0	0	0.024405	1	2893	2893		14.865	0	1	204090			74877	9542	52233	52318	82275	82275					0.017366142376545213
SPGQMPRPQGF	11	Unmodified	_SPGQMPRPQGF_					0	0	0		ENST00000285599.7_1_4:6623008-6623437:+|nuORF	ENST00000285599.7_1_4:6623008-6623437:+|nuORF	ENST00000285599.7_1_4:6623008-6623437:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.2073974609375	3	401.197602	1200.57098	-0.68493	-0.00027479	-0.30485	-0.0001223	-0.98978	-0.0003971	401.19741721229724	27.42	2.0504	27.264	26.107	28.158	-0.15664					88	50	2	0	0	0	0.024732	1	1531	1531		8.4073	0	1	547310			74878	11752	52234	52319	82276	82276					-0.021285976569515697
SPGQRATL	8	Unmodified	_SPGQRATL_					0	0	0		ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.23028564453125	2	415.229959	828.445365	0.25422	0.00010556	0.044883	1.8637E-05	0.2991	0.0001242	415.2298869655345	25.979	0.79503	25.979	25.694	26.489	0					35	18	2	0	0	0	0.36844	2	1293	1279;1293		101.6	19.041	1	814440			74879	8920	52235	52320	82277;82278	82278					0.024280585491396778
SPGQRATL	8	Unmodified	_SPGQRATL_					0	0	0		ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2301940917969	2	415.229959	828.445365	-0.15155	-6.2928E-05	0.61003	0.0002533	0.45848	0.00019037	415.2301498503297	25.999	0.79262	25.976	25.693	26.486	-0.023088					34	18	2	0	0	0	0.28409	1	1275	1275		118.74	30.989	1	875890			74880	8920	52235	52320	82279	82279					0.024280585491396778
SPGQRATL	8	Unmodified	_SPGQRATL_					0	0	0		ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	ENSG00000179772|ENST00000375978|FOXS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.23065185546875	2	415.229959	828.445365	0.29276	0.00012156	0.25348	0.00010525	0.54624	0.00022682	415.229965878168	25.69	0.66729	25.771	25.581	26.248	0.08009					27	15	2	0	0	0	0.25561	2	1189	1189;1200		131.03	28.258	1	864230			74881	8920	52235	52320	82280;82281	82280					0.024280585491396778
SPGQRAVL	8	Unmodified	_SPGQRAVL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2408142089844	2	414.240327	826.466101	-0.40942	-0.0001696	0.59757	0.00024754	0.18816	7.7942E-05	414.24040396672825	30.683	0.70953	30.757	30.42	31.129	0.074316					45	16	4	0	0	0	0.71063	1	1946	1946		66.429	11.535	1	1035800			74882	10245	52236	52321	82282	82282					0.045926489288035555
SPGQRAVL	8	Unmodified	_SPGQRAVL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	414.240327	826.466101	-0.10251	-4.2463E-05	-0.36644	-0.00015179	-0.46895	-0.00019426	414.2399174037988	31.057	0.874	31.057	30.717	31.591	0	0.11713	-0.00036923	NaN	66.429	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006000			74883	10245	52236	52321							0.045926489288035555
SPGQRAVL	8	Unmodified	_SPGQRAVL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	414.240327	826.466101	0.053796	2.2284E-05	-0.21981	-9.1055E-05	-0.16602	-6.8771E-05	414.24013264911156	31.004	0.83735	31.016	30.668	31.505	0.011797	0.076015	-0.00024775	NaN	66.429	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1084500			74884	10245	52236	52321							0.045926489288035555
SPGQRAVL	8	Unmodified	_SPGQRAVL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.240327	826.466101	0.020776	8.6062E-06	0.27932	0.00011571	0.3001	0.00012431	414.24054036220963	31.082	0.40386	30.929	30.681	31.085	-0.15231	-0.010439	0.00016578	NaN	66.429	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37657			74885	10245	52236	52321							0.045926489288035555
SPGQRVGLL	9	Unmodified	_SPGQRVGLL_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.77423095703125	2	463.774534	925.534515	-0.11325	-5.2525E-05	1.2681	0.00058813	1.1549	0.00053561	463.7742357687104	49.388	1.058	49.236	48.864	49.922	-0.15277					84	28	5	0	0	0	0.42604	2	5063	5063;5079		64.207	5.3419	1	8462700			74886	722	52237	52322	82283;82284	82283					0.0687689350867231
SPGRAAFVGE	10	Unmodified	_SPGRAAFVGE_					0	0	0		ENST00000368936.5_1_1:150981012-150997089:+|nuORF;ENST00000368935.1_1_1:150981012-150999711:+|nuORF;ENST00000431193.5_3_1:150981012-150998071:+|nuORF;ENST00000462440.5_1_1:150981012-150999718:+|nuORF;ENST00000475722.5_1_1:150981012-150999718:+|nuORF	ENST00000368936.5_1_1:150981012-150997089:+|nuORF	ENST00000368936.5_1_1:150981012-150997089:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2803649902344	2	495.753798	989.493044	0.057087	2.8301E-05	3.6096	0.0017895	3.6667	0.0018178	495.7553469997519	18.742	1.0823	18.611	18.302	19.384	-0.13147					31	21	2	0	0	0	0.03519	1	292	292		33.922	0.40605	1	19560			74887	12909	52238	52323	82285	82285					-0.0021228725066748666
SPGRARAR	8	Unmodified	_SPGRARAR_					0	0	0		ENST00000520584.5_1_8:144329193-144329640:+|nuORF	ENST00000520584.5_1_8:144329193-144329640:+|nuORF	ENST00000520584.5_1_8:144329193-144329640:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801208496094	2	435.754467	869.494381	-0.60699	-0.0002645	3.2145	0.0014007	2.6075	0.0011362	435.75591881289904	39.07	1.087	39.094	38.688	39.775	0.023727					66	29	4	0	0	0	0.027866	1	3210	3210		20.947	0	1	1331300			74888	15986	52239	52324	82286	82286					0.05441391628744441
SPGRARAR	8	Unmodified	_SPGRARAR_					0	0	0		ENST00000520584.5_1_8:144329193-144329640:+|nuORF	ENST00000520584.5_1_8:144329193-144329640:+|nuORF	ENST00000520584.5_1_8:144329193-144329640:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7802734375	2	435.754467	869.494381	0.49951	0.00021766	4.1549	0.0018105	4.6544	0.0020282	435.755491916971	47.595	0.66883	47.409	47.043	47.712	-0.18684					39	17	3	0	0	0	0.027866	1	4627	4627		10.866	0	1	586550			74889	15986	52239	52324	82287	82287					0.05441391628744441
SPGRGLAF	8	Unmodified	_SPGRGLAF_					0	0	0			REV__nc|ENSG00000004777|O14559-11|ARHGAP33	REV__nc|ENSG00000004777|O14559-11|ARHGAP33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	403.2376708984375	2	402.72177	803.428987	0.22695	9.1397E-05	4.1409	0.0016676	4.3678	0.001759	402.72341572032377	31.422	3.5696	31.433	29.248	32.818	0.011799					140	88	3	0	0	0	0.027866	1	1843	1843		35.201	22.242	1	386660	+		74890	19784	52240	52325	82288	82288					0.019409773830375343
SPGRLHNI	8	Unmodified	_SPGRLHNI_					0	0	0			REV__ENST00000488746.1_1_3:53919860-53920917:-|nuORF	REV__ENST00000488746.1_1_3:53919860-53920917:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2083435058594	2	447.251226	892.487899	-0.38499	-0.00017219	-0.96355	-0.00043095	-1.3485	-0.00060314	447.25078246887114	32.005	0.35711	32.068	31.921	32.278	0.062885					10	8	2	0	0	0	0.027866	1	2119	2119		12.959	12.051	1	27980	+		74891	22093	52241	52326	82289	82289					0.03735453677370515
SPGRLHNI	8	Unmodified	_SPGRLHNI_					0	0	0			REV__ENST00000488746.1_1_3:53919860-53920917:-|nuORF	REV__ENST00000488746.1_1_3:53919860-53920917:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	447.251226	892.487899	-0.27703	-0.0001239	-1.532	-0.00068519	-1.809	-0.0008091	447.2502863488648	32.094	0.34208	31.936	31.737	32.079	-0.15772	-0.065853	-0.00031492	NaN	3.6843	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61288	+		74892	22093	52241	52326							0.03735453677370515
SPGRSGGYT	9	Unmodified	_SPGRSGGYT_					0	0	0			REV__NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant	REV__NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.2276306152344	2	441.209224	880.403895	-0.55003	-0.00024268	1.1769	0.00051927	0.62688	0.00027659	441.21025594861476	34.815	0.79352	34.793	34.593	35.386	-0.021767					22	20	2	0	0	0	0.024397	1	2624	2624		39.253	19.893	1	82211	+		74893	37267	52242	52327	82290	82290					-0.041091222101840685
SPGSPPPGR	9	Unmodified	_SPGSPPPGR_					0	0	0		ENSG00000165752|ENST00000298630|STK32C	ENSG00000165752|ENST00000298630|STK32C	ENSG00000165752|ENST00000298630|STK32C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.23468017578125	2	426.222134	850.429715	-0.99181	-0.00042273	-0.70495	-0.00030047	-1.6968	-0.0007232	426.2222771719099	27.981	0.23414	27.981	27.765	27.999	0					8	5	2	0	0	0	0.024477	1	1567	1567		9.7057	0	1	341350			74894	7463	52243	52328	82291	82291					-0.001482279679066778
SPGSQSDAEP	10	Unmodified	_SPGSQSDAEP_					0	0	0		ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7928161621094	2	487.706711	973.398869	1.4941	0.00072869	-0.17757	-8.6604E-05	1.3166	0.00064209	487.70651698604587	36.257	0.46471	36.059	35.91	36.375	-0.19829					18	11	2	0	0	0	0.03519	1	2802	2802		34.173	17.699	1	162880			74895	2342	52244	52329	82292	82292					-0.0888947086347116
SPGSRALDP	9	Unmodified	_SPGSRALDP_					0	0	0			REV__ENST00000372562.1_1_1:42922065-42925274:+|nuORF	REV__ENST00000372562.1_1_1:42922065-42925274:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2510986328125	2	450.232699	898.450845	-0.3978	-0.0001791	-2.9999	-0.0013506	-3.3977	-0.0015297	450.23007560169185	33.183	0.342	33.183	32.979	33.321	0					13	8	2	0	0	0	0.024323	1	2355	2355		35.618	16.258	1	55729	+		74896	31210	52245	52330	82293	82293					-0.0024426265906640765
SPGSRRVAF	9	Unmodified	_SPGSRRVAF_					0	0	0			REV__ENST00000562859.5_2_15:42565693-42566462:+|nuORF	REV__ENST00000562859.5_2_15:42565693-42566462:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.7646179199219	2	488.769783	975.525013	-1.1419	-0.00055811	-0.16203	-7.9194E-05	-1.3039	-0.00063731	488.7697819313355	40.68	0.3511	40.45	40.273	40.624	-0.2303					21	9	3	0	0	0	0.024261	1	3546	3546		30.318	0	1	528500	+		74897	35208	52246	52331	82294	82294					0.03627125223135863
SPGSVGTHQ	9	Unmodified	_SPGSVGTHQ_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;nc|ENSG00000109118|Q96QT6-4|PHF12;ENSG00000109118|ENST00000332830|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.29486083984375	2	435.209224	868.403895	1.4406	0.00062697	3.3317	0.00145	4.7723	0.0020769	435.21056478059086	59.806	0.77451	59.806	59.444	60.219	0					43	20	3	0	0	0	0.023635	1	6789	6789		56.721	21.52	1	888580			74898	17178	52247	52332	82295	82295					-0.03557122210190755
SPGSVGTHQ	9	Unmodified	_SPGSVGTHQ_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;nc|ENSG00000109118|Q96QT6-4|PHF12;ENSG00000109118|ENST00000332830|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.209224	868.403895	0.74122	0.00032259	4.0127	0.0017464	4.754	0.002069	435.21087359151767	60.041	0.68722	59.844	59.575	60.262	-0.19742	0.034371	-0.00037016	NaN	47.657	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432190			74899	17178	52247	52332							-0.03557122210190755
SPGSVGTHQ	9	Unmodified	_SPGSVGTHQ_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;nc|ENSG00000109118|Q96QT6-4|PHF12;ENSG00000109118|ENST00000332830|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.209224	868.403895	0.17143	7.4607E-05	4.6487	0.0020232	4.8202	0.0020978	435.21112858311307	60.007	0.88733	59.831	59.516	60.403	-0.1761	0.021167	0.00018343	NaN	47.657	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782970			74900	17178	52247	52332							-0.03557122210190755
SPGSVGTHQ	9	Unmodified	_SPGSVGTHQ_					0	0	0		ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-5|PHF12;nc|ENSG00000109118|Q96QT6-3|PHF12;nc|ENSG00000109118|Q96QT6-4|PHF12;ENSG00000109118|ENST00000332830|PHF12	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	ENST00000582436.5_1_17:27237055-27251401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	435.209224	868.403895	0.15707	6.836E-05	4.6774	0.0020356	4.8344	0.002104	435.2111591880244	60.142	1.0119	59.893	59.457	60.469	-0.24842	0.084067	0.00020833	NaN	47.657	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1178100			74901	17178	52247	52332							-0.03557122210190755
SPGSWAPLLST	11	Unmodified	_SPGSWAPLLST_					0	0	0		ENST00000222374.2_1_19:44126724-44127456:-|nuORF	ENST00000222374.2_1_19:44126724-44127456:-|nuORF	ENST00000222374.2_1_19:44126724-44127456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2930908203125	2	558.290214	1114.56587	-0.20003	-0.00011167	3.3763	0.001885	3.1763	0.0017733	558.2917215195405	76.265	1.1796	76.097	75.514	76.693	-0.16854					58	28	3	0	0	0	1.0017	1	9059	9059		36.447	2.2742	1	1502200			74902	11187	52248	52333	82296	82296					0.01317421752082737
SPGTHLLAV	9	Unmodified	_SPGTHLLAV_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000553080.1_1_16:716564-717586:+|nuORF;nc|ENSG00000161996|Q96KV7-7|WDR90;ENST00000547407.5_1_16:712941-717586:+|nuORF;ENST00000549024.5_1_16:711101-717586:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.7559814453125	2	447.75581	893.497067	-0.083711	-3.7482E-05	0.24118	0.00010799	0.15747	7.0508E-05	447.75574862170924	57.168	0.79998	57.168	56.841	57.641	0					59	21	4	0	0	0	0.59099	2	6418	6418;6442		53.351	1.3109	1	3942500			74903	6908	52249	52334	82297;82298	82297					0.04605802243054313
SPGTHLLAV	9	Unmodified	_SPGTHLLAV_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000553080.1_1_16:716564-717586:+|nuORF;nc|ENSG00000161996|Q96KV7-7|WDR90;ENST00000547407.5_1_16:712941-717586:+|nuORF;ENST00000549024.5_1_16:711101-717586:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.7559814453125	2	447.75581	893.497067	0.61884	0.00027709	-0.39734	-0.00017791	0.2215	9.9179E-05	447.75547321758864	57.388	0.77425	57.213	56.834	57.608	-0.1749					57	20	4	0	0	0	0.62163	1	6437	6437		51.335	5.3835	1	3745700			74904	6908	52249	52334	82299	82299					0.04605802243054313
SPGTIVPQP	9	Unmodified	_SPGTIVPQP_					0	0	0		ENST00000490967.5_1_22:31503065-31503518:-|nuORF	ENST00000490967.5_1_22:31503065-31503518:-|nuORF	ENST00000490967.5_1_22:31503065-31503518:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.2513732910156	2	448.247818	894.481082	0.26145	0.00011719	-3.2171	-0.001442	-2.9556	-0.0013249	448.24625185450685	25.445	0.62995	25.525	25.336	25.966	0.080088					40	14	4	0	0	0	0.024427	1	1142	1142		26.693	0	1	381460			74905	15447	52250	52335	82300	82300					0.029620960061379265
SPGTSAPVPAP	11	Unmodified	_SPGTSAPVPAP_					0	0	0		ENST00000411526.5_1_7:154735978-154736143:+|nuORF	ENST00000411526.5_1_7:154735978-154736143:+|nuORF	ENST00000411526.5_1_7:154735978-154736143:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.254150390625	2	490.756007	979.497461	-1.0217	-0.00050138	3.9945	0.0019603	2.9729	0.0014589	490.7576727463881	39.712	1.1471	39.736	39.313	40.46	0.023727					49	31	2	0	0	0	0.024776	1	3454	3454		40.778	8.8233	1	293210			74906	13807	52251	52336	82301	82301					0.006891771722280282
SPGTYVGHPL	10	Unmodified	_SPGTYVGHPL_					0	0	0		ENST00000550646.2_1_14:20137708-20137885:+|nuORF	ENST00000550646.2_1_14:20137708-20137885:+|nuORF	ENST00000550646.2_1_14:20137708-20137885:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7901611328125	2	514.263999	1026.51345	-0.20905	-0.00010751	-3.6231	-0.0018632	-3.8322	-0.0019707	514.2619114627785	41.661	0.46456	41.529	41.251	41.716	-0.13219					33	12	3	0	0	0	0.03519	1	3717	3717		42.396	9.5837	1	175780			74907	16589	52252	52337	82302	82302					0.0012488340912568674
SPGVGKTSL	9	Unmodified	_SPGVGKTSL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.G1753V|1|0.33|ENSG00000112159|chr6:89729022-89729022|C/A|missense_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2400817871094	2	423.239993	844.465432	-0.52151	-0.00022072	0.81011	0.00034287	0.28861	0.00012215	423.240238927725	34.215	0.96812	34.215	33.7	34.668	0					59	24	4	0	0	0	0.038547	2	2538	2528;2538		134.77	43.827	1	3073600			74908	3177	52253	52338	82303;82304	82304					0.03697809489096926
SPGVGKTSL	9	Unmodified	_SPGVGKTSL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.G1753V|1|0.33|ENSG00000112159|chr6:89729022-89729022|C/A|missense_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.240234375	2	423.239993	844.465432	-0.25081	-0.00010615	0.66366	0.00028089	0.41286	0.00017474	423.2401586806589	33.979	1.5915	34.029	33.571	35.162	0.050255					77	40	4	0	0	0	0.056725	3	2447	2438;2447;2461		126.24	41.327	1	3111400			74909	3177	52253	52338	82305;82306;82307	82306					0.03697809489096926
SPGVQPADVK	10	Unmodified	_SPGVQPADVK_					0	0	0		nc|ENSG00000087884|Q9H7C9-3|AAMDC;nc|ENSG00000087884|Q9H7C9-2|AAMDC;ENSG00000087884|ENST00000393427|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	nc|ENSG00000087884|Q9H7C9-3|AAMDC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2073974609375	2	499.269281	996.52401	-0.50035	-0.00024981	-0.64302	-0.00032104	-1.1434	-0.00057085	499.268607062147	43.624	0.26714	43.518	43.433	43.7	-0.10581					10	6	2	0	0	0	0.03519	1	4030	4030		30.318	16.181	1	110150			74910	1856	52254	52339	82308	82308					0.02560866063561207
SPGVVGMVLNV	11	Unmodified	_SPGVVGMVLNV_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2462158203125	2	536.296985	1070.57942	-0.17341	-9.3001E-05	-0.81357	-0.00043632	-0.98699	-0.00052932	536.2964061891644	69.947	0.23738	69.947	69.791	70.029	0					8	5	2	0	0	0	0.024749	1	8448	8448		35.152	1.2304	1	324310	+		74911	24332	52255	52340	82309	82309					0.04694956259686478
SPGVVGMVLNV	11	Unmodified	_SPGVVGMVLNV_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.296985	1070.57942	-0.37008	-0.00019847	-2.3316	-0.0012504	-2.7017	-0.0014489	536.2953781131414	70.172	0.32334	69.958	69.772	70.096	-0.21425	-0.022643	-0.00098015	NaN	35.152	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147690	+		74912	24332	52255	52340							0.04694956259686478
SPGVVVSAVPP	11	Unmodified	_SPGVVVSAVPP_					0	0	0			REV__CON__P12763	REV__CON__P12763	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32379150390625	2	504.78985	1007.56515	-0.065253	-3.2939E-05	0.055353	2.7942E-05	-0.0099002	-4.9975E-06	505.29255381123824	79.334	0.24227	79.352	79.233	79.475	0.018677					6	5	2	0	0	0	0.024768	1	9778	9778		24.519	0.31644	1	82875	+	+	74913	19548	52256	52341	82310	82310					0.06166627103038991
SPGWNKRLKR	10	Unmodified	_SPGWNKRLKR_					0	0	0			REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	REV__nc|ENSG00000123329|Q9BRR9-4|ARHGAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2120666503906	3	414.579034	1240.71527	-0.33363	-0.00013832	0.35307	0.00014638	0.019444	8.0609E-06	414.57914188113944	28.027	0.29721	28.108	27.91	28.208	0.080811					10	6	2	0	0	0	0.03519	1	1530	1530		31.634	23.227	1	73088	+		74914	22688	52257	52342	82311	82311					0.10454411885348236
SPGWRRPA	8	Unmodified	_SPGWRRPA_					0	0	0		ENST00000504526.1_1_4:184580477-184587420:+|nuORF	ENST00000504526.1_1_4:184580477-184587420:+|nuORF	ENST00000504526.1_1_4:184580477-184587420:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2303161621094	2	463.751393	925.488233	0.57217	0.00026534	-0.4175	-0.00019361	0.15467	7.1729E-05	463.7508021454807	37.143	0.52993	37.176	36.957	37.487	0.032269					22	13	2	0	0	0	0.027866	1	2988	2988		28.254	0	1	238550			74915	15717	52258	52343	82312	82312					0.022508733972131267
SPGWSALAR	9	Unmodified	_SPGWSALAR_					0	0	0		nc|ENSG00000277215|Q8N9U9|SPANXA2-OT1	nc|ENSG00000277215|Q8N9U9|SPANXA2-OT1	nc|ENSG00000277215|Q8N9U9|SPANXA2-OT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7741394042969	2	472.751059	943.487565	1.8605	0.00087957	2.1508	0.0010168	4.0113	0.0018964	472.7517742663664	37.06	0.52343	37.06	36.927	37.45	0					23	13	2	0	0	0	0.024319	1	2978	2978		24.519	0	1	273380			74916	18798	52259	52344	82313	82313					0.013560339575064972
SPGYFHYG	8	Unmodified	_SPGYFHYG_					0	0	0			REV__ENST00000528488.5_1_11:47073946-47158905:+|nuORF	REV__ENST00000528488.5_1_11:47073946-47158905:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.73138427734375	2	464.20341	926.392267	0.027964	1.2981E-05	0.28231	0.00013105	0.31027	0.00014403	464.20343697931094	40.281	0.44257	40.169	39.94	40.382	-0.11223					18	11	2	0	0	0	0.027866	1	3509	3509		8.2313	0	1	102670	+		74917	34495	52260	52345	82314	82314					-0.07387319233521339
SPGYQTELV	9	Unmodified	_SPGYQTELV_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.3317565917969	2	497.248015	992.481476	-0.0095625	-4.7549E-06	-1.277	-0.000635	-1.2866	-0.00063975	497.2474000336407	104.34	0.4417	104.35	104.11	104.55	0.0031357					13	10	2	0	0	0	0.024477	1	13327	13327		27.882	3.6795	1	34258			74918	7286	52261	52346	82315	82315					-0.015065290646589347
SPHFLKFHPK	10	Unmodified	_SPHFLKFHPK_					0	0	0			REV__nc|ENSG00000075651|Q13393-4|PLD1	REV__nc|ENSG00000075651|Q13393-4|PLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.8768310546875	3	413.232864	1236.67676	-0.078216	-3.2322E-05	-0.84416	-0.00034884	-0.92238	-0.00038116	413.232580208764	30.258	0.86753	30.267	29.797	30.665	0.0086708					37	20	3	0	0	0	0.03519	1	1868	1868		18.531	0	1	544660	+		74919	36471	52262	52347	82316	82316					0.06789106250835175
SPHLLGGH	8	Unmodified	_SPHLLGGH_					0	0	0			REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|323|3|anti-sense	REV__L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|323|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.89141845703125	2	409.219395	816.424236	-0.38912	-0.00015924	2.3654	0.00096796	1.9763	0.00080873	409.21977433904124	27.941	0.89808	27.772	27.57	28.468	-0.16816					27	21	2	0	0	0	0.027866	1	1637	1637		8.8223	0	1	84799	+		74920	36273	52263	52348	82317	82317					0.008680932402853614
SPHPLLAF	8	Unmodified	_SPHPLLAF_					0	0	0		nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	nc|ENSG00000168062|Q8N1L9-2|BATF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.7147521972656	2	441.247621	880.480688	-0.085438	-3.77E-05	-2.4461	-0.0010794	-2.5316	-0.0011171	441.24645735470756	31.66	0.40148	31.672	31.34	31.742	0.011797					13	9	2	0	0	0	0.027866	1	2072	2072		21.702	0	1	68360			74921	7780	52264	52349	82318	82318					0.03566721076947488
SPHPPPPK	8	Unmodified	_SPHPPPPK_					0	0	0			REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF	REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	429.2273864746094	2	428.73742	855.460287	-0.71557	-0.00030679	-2.5217	-0.0010811	-3.2373	-0.0013879	428.7358061386153	27.004	0.59944	27.086	26.758	27.357	0.081293					29	15	3	0	0	0	0.027866	1	1388	1388		18.324	0	1	300790	+		74922	32024	52265	52350	82319	82319					0.026775504171382636
SPHPRPAR	8	Unmodified	_SPHPRPAR_					0	0	0		ENST00000536957.5_1_12:120661994-120662090:-|nuORF	ENST00000536957.5_1_12:120661994-120662090:-|nuORF	ENST00000536957.5_1_12:120661994-120662090:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2709045410156	2	459.256843	916.499132	-0.52704	-0.00024205	-0.49539	-0.00022751	-1.0224	-0.00046956	459.25658379732664	43.515	0.68824	43.375	42.921	43.609	-0.13929					40	18	3	0	0	0	0.027866	1	4078	4078		24.203	0	1	1300200			74923	16368	52266	52351	82320	82320					0.037542757715073094
SPHVFYSS	8	Unmodified	_SPHVFYSS_					0	0	0			REV__ENSG00000283434|ENST00000637986|CSNKA2IP	REV__ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7684020996094	2	462.216517	922.418482	-0.74646	-0.00034503	2.2073	0.0010202	1.4608	0.00067522	462.21739699668996	23.853	0.47281	23.806	23.528	24	-0.047148					13	10	2	0	0	0	0.027866	1	970	970		40.573	5.3719	1	31302	+		74924	29244	52267	52352	82321	82321					-0.04583050062035454
SPIEFGCTQCD	11	Unmodified	_SPIEFGCTQCD_					0	0	0			REV__ENST00000549472.1_1_12:56480319-56481575:+|nuORF	REV__ENST00000549472.1_1_12:56480319-56481575:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.2391967773438	2	600.239006	1198.46346	-1.6893	-0.001014	1.4959	0.00089791	-0.19342	-0.0001161	600.2397702109681	48.741	0.98037	48.741	48.344	49.324	0					64	27	3	0	0	0	0.58492	1	4989	4989		70.816	6.6089	1	3659000	+		74925	34894	52268	52353	82322	82322					-0.12783355373335326
SPIEKSGVL	9	Unmodified	_SPIEKSGVL_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2686767578125	2	465.26875	928.522947	0.045305	2.1079E-05	-0.49011	-0.00022803	-0.44481	-0.00020696	465.2682061031588	42.024	0.99215	42.024	41.722	42.715	0					70	28	4	0	0	0	0.14181	1	3830	3830		101.25	8.0572	1	6325700			74926	5157	52269	52354	82323	82323					0.05582651694669494
SPIEKSGVL	9	Unmodified	_SPIEKSGVL_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2681884765625	2	465.26875	928.522947	-0.094055	-4.3761E-05	-0.56204	-0.0002615	-0.6561	-0.00030526	465.26825917434655	42.163	0.77537	42.031	41.716	42.491	-0.13219					88	22	6	0	0	0	0.14181	1	3844	3844		101.25	10.883	1	6290500			74927	5157	52269	52354	82324	82324					0.05582651694669494
SPIEKSGVL	9	Unmodified	_SPIEKSGVL_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.268310546875	2	465.26875	928.522947	0.59601	0.00027731	-1.021	-0.00047502	-0.42494	-0.00019771	465.26797271681784	42.099	1.0415	42.125	41.784	42.825	0.026016					69	29	4	0	0	0	0.11727	2	3805	3792;3805		106.68	13.488	1	7104100			74928	5157	52269	52354	82325;82326	82326					0.05582651694669494
SPIFKYPD	8	Unmodified	_SPIFKYPD_					0	0	0		ENST00000296785.7_1_5:72858732-72861025:-|nuORF	ENST00000296785.7_1_5:72858732-72861025:-|nuORF	ENST00000296785.7_1_5:72858732-72861025:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2695007324219	2	483.750193	965.485833	-0.33786	-0.00016344	0.70031	0.00033877	0.36244	0.00017533	483.7503823697545	26.843	0.59166	26.686	26.426	27.018	-0.15664					16	13	2	0	0	0	0.027866	1	1441	1441		7.1934	0	1	76096			74929	11852	52270	52355	82327	82327					0.0017098014889143087
SPIPGDSFQS	10	Unmodified	_SPIPGDSFQS_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__UBE3C-PTPRN2|1|fusion	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.78125	2	517.743096	1033.47164	-0.55322	-0.00028643	-2.147	-0.0011116	-2.7002	-0.001398	517.7419161956481	42.178	0.82082	42.204	41.821	42.641	0.026012					37	23	2	0	0	0	0.03519	1	3749	3749		23.523	0	1	402870	+		74930	24992;37751	52271	52356	82328	82328					-0.04375717070047358
SPIQPHIL	8	Unmodified	_SPIQPHIL_					0	0	0			REV__ENST00000570049.5_1_16:67335149-67360610:-|nuORF	REV__ENST00000570049.5_1_16:67335149-67360610:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.24786376953125	2	452.766178	903.517802	0.68371	0.00030956	1.1426	0.00051733	1.8263	0.0008269	452.76659021328055	33.135	0.31778	33.192	33.105	33.423	0.056572					12	8	2	0	0	0	0.027866	1	2344	2344		26.796	0	1	253110	+		74931	35384	52272	52357	82329	82329					0.06218392622713509
SPIQYITVS	9	Unmodified	_SPIQYITVS_					0	0	0		KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.27459716796875	2	504.274032	1006.53351	-1.2132	-0.00061177	-0.16161	-8.1493E-05	-1.3748	-0.00069326	504.2737611474597	91.253	1.8872	91.253	90.214	92.101	0					85	44	4	0	0	0	0.091713	1	11549	11549		113.41	5.3241	1	2810900			74932	3942	52273	52358	82330	82330					0.030506343490742438
SPIQYITVS	9	Unmodified	_SPIQYITVS_					0	0	0		KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2742614746094	2	504.274032	1006.53351	-0.44144	-0.00022261	-1.047	-0.00052796	-1.4884	-0.00075057	504.27337635214184	91.314	1.4678	91.302	90.533	92.001	-0.012383					74	34	4	0	0	0	0.12602	1	11537	11537		104.75	0	1	4327600			74933	3942	52273	52358	82331	82331					0.030506343490742438
SPIQYITVS	9	Unmodified	_SPIQYITVS_					0	0	0		KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.27398681640625	2	504.274032	1006.53351	0.40531	0.00020439	-1.9144	-0.00096539	-1.5091	-0.000761	504.2729208814128	91.335	2.3544	91.347	90.321	92.675	0.011276					101	56	5	0	0	0	0.091713	1	11480	11480		113.41	17.221	1	4556100			74934	3942	52273	52358	82332	82332					0.030506343490742438
SPIQYITVS	9	Unmodified	_SPIQYITVS_					0	0	0		KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.274032	1006.53351	-1.2668	-0.00063882	0.30732	0.00015497	-0.9595	-0.00048385	504.2739552501728	91.342	0.33687	91.193	90.973	91.31	-0.1487	-0.068578	0.0012604	NaN	113.41	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88133			74935	3942	52273	52358							0.030506343490742438
SPIQYITVS	9	Unmodified	_SPIQYITVS_					0	0	0		KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant;nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	KIAA1549|p.F603Sfs*48|1|0.23|ENSG00000122778|chr7:138917818-138917818|A/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.274032	1006.53351	0.017179	8.663E-06	-1.3526	-0.00068206	-1.3354	-0.0006734	504.77495267060647	91.354	0.33772	91.215	91.064	91.402	-0.13942	-0.046829	-0.00041369	NaN	113.41	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91766			74936	3942	52273	52358							0.030506343490742438
SPIRVKQVHN	10	Unmodified	_SPIRVKQVHN_					0	0	0			REV__ENST00000539683.2_1_16:31129164-31131922:+|nuORF	REV__ENST00000539683.2_1_16:31129164-31131922:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.343646	1176.67274	-0.80911	-0.00047685	-0.041358	-2.4374E-05	-0.85047	-0.00050122	589.3434865746038	94.967	0.64822	94.829	94.506	95.155	-0.13779					49	14	4	0	0	0	1.0992	1	11667	11667		32.812	0.061884	1	1636700	+		74937	34737	52274	52359	82333	82333					0.09147016757151505
SPISGREYR	9	Unmodified	_SPISGREYR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.81884765625	2	532.777805	1063.54106	-0.31837	-0.00016962	-1.6667	-0.000888	-1.9851	-0.0010576	532.775572543434	98.632	0.22348	98.467	98.375	98.599	-0.1652					5	4	2	0	0	0	0.024541	1	12213	12213		5.9211	0	1	13457			74938	6479	52275	52360	82334	82334					0.011827866693693068
SPISSKNPLN	10	Unmodified	_SPISSKNPLN_					0	0	0			REV__nc|ENSG00000110693|P35712-4|SOX6	REV__nc|ENSG00000110693|P35712-4|SOX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.295166015625	2	528.787838	1055.56112	-0.98755	-0.0005222	1.2454	0.00065853	0.25781	0.00013633	528.7884443293661	45.382	0.39925	45.382	45.181	45.58	0					21	11	3	0	0	0	0.03519	1	4378	4378		36.447	13.404	1	757530	+		74939	21867	52276	52361	82335	82335					0.03556537609347288
SPISVPKEA	9	Unmodified	_SPISVPKEA_					0	0	0			REV__nc|ENSG00000133318|O95197-7|RTN3	REV__nc|ENSG00000133318|O95197-7|RTN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2427673339844	2	464.260925	926.507297	0.12918	5.9975E-05	0.51061	0.00023706	0.6398	0.00029703	464.26070889308437	67.875	0.27135	67.875	67.792	68.064	0					10	6	2	0	0	0	0.023655	1	8143	8143		69.628	7.5202	1	83099	+		74940	23367	52277	52362	82336	82336					0.04110365177609765
SPISVPKEA	9	Unmodified	_SPISVPKEA_					0	0	0			REV__nc|ENSG00000133318|O95197-7|RTN3	REV__nc|ENSG00000133318|O95197-7|RTN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	464.260925	926.507297	0.77498	0.00035979	0.49635	0.00023044	1.2713	0.00059023	464.2615096973716	67.494	0.36501	67.518	67.27	67.635	0.023911	-0.17875	-4.705E-06	NaN	69.628	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57341	+		74941	23367	52277	52362							0.04110365177609765
SPIVKSAKFV	10	Unmodified	_SPIVKSAKFV_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;PHIP|p.L1370Ffs*7|1|0.12|ENSG00000146247|chr6:78947719-78947720|-/A|frameshift_variant	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3280029296875	2	538.329142	1074.64373	-0.3393	-0.00018266	-3.5267	-0.0018985	-3.866	-0.0020812	538.327132364102	99.676	2.1477	99.671	99.21	101.36	-0.0050812					159	53	7	0	0	0	1.0002	1	12717	12717		45.972	3.108	1	22353000			74942	5868	52278	52363	82337	82337					0.10939479408125408
SPIWAPTQ	8	Unmodified	_SPIWAPTQ_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.77947998046875	2	450.23471	898.454868	-0.2675	-0.00012044	-3.8203	-0.00172	-4.0878	-0.0018405	450.23276023712884	26.28	1.1195	26.256	25.864	26.984	-0.023088					71	26	4	0	0	0	0.027866	1	1270	1270		10.866	3.1753	1	1005400			74943	10069	52279	52364	82338	82338					0.001578268346634104
SPKAPQMTED	10	Unmodified	_SPKAPQMTED_					0	0	0			REV__nc|ENSG00000101109|Q13043-2|STK4	REV__nc|ENSG00000101109|Q13043-2|STK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.2824096679688	2	552.255514	1102.49647	-0.51667	-0.00028534	-1.6467	-0.00090943	-2.1634	-0.0011948	552.2545726029222	78.124	1.3266	78.14	77.821	79.148	0.015907					46	31	2	0	0	0	0.03519	1	9632	9632		38.754	8.4359	1	166390	+		74944	21184	52280	52365	82339	82339					-0.05067405258978397
SPKAPQMTED	10	Unmodified	_SPKAPQMTED_					0	0	0			REV__nc|ENSG00000101109|Q13043-2|STK4	REV__nc|ENSG00000101109|Q13043-2|STK4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.255514	1102.49647	-0.039542	-2.1837E-05	-8.0544	-0.0044481	-8.0939	-0.0044699	552.2511843087402	78.693	0.55934	78.438	78.17	78.729	-0.25471	0.14911	-0.0052964	NaN	38.754	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74942	+		74945	21184	52280	52365							-0.05067405258978397
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.26104736328125	2	476.260925	950.507297	-0.46008	-0.00021912	-1.1416	-0.00054371	-1.6017	-0.00076283	476.2606905053335	28.186	1.81	27.941	27.289	29.099	-0.24524					152	42	6	0	0	0	0.20308	3	1630	1630;1691;1718		139.97	28.322	1	99318000			74946	2053	52281	52366	82340;82341;82342	82340					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2611999511719	2	476.260925	950.507297	-0.62088	-0.0002957	0.027723	1.3203E-05	-0.59316	-0.0002825	476.2608288811271	29.515	1.8994	29.343	28.937	30.836	-0.17258					81	44	4	0	0	0	0.30694	1	1819	1819		110.12	10.745	1	1370200			74947	2053	52281	52366	82343	82343					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	OPSCC_40_ClassI_Rep-2	5	476.2608337402344	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.927	1	27.759	27.259	28.259	-0.16816								0	0	0	0.24803	1	1581	1581		127.46	10.558	1				74948	2053	52281	52366	82344	82344					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	OPSCC_40_ClassI_Rep-2	5	476.2607421875	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.247	1	28.078	27.578	28.578	-0.16897								0	0	0	0.15316	1	1629	1629		139.97	10.288	1				74949	2053	52281	52366	82345	82345					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	OPSCC_40_ClassI_Rep-2	5	476.26080322265625	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.33	1	28.161	27.661	28.661	-0.16897								0	0	0	0.19211	1	1641	1641		134.81	0.99809	1				74950	2053	52281	52366	82346	82346					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	OPSCC_40_ClassI_Rep-2	5	476.2608642578125	2	476.260925	950.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.417	1	28.248	27.748	28.748	-0.16897								0	0	0	0.34704	1	1654	1654		104.06	7.8664	1				74951	2053	52281	52366	82347	82347					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2607421875	2	476.260925	950.507297	-0.35256	-0.00016791	-1.2571	-0.00059871	-1.6097	-0.00076662	476.2606324165451	28.056	1.9776	27.904	27.149	29.127	-0.15195					151	47	6	0	0	0	0.26388	4	1644	1558;1644;1657;1668		127.46	22.715	1	115570000			74952	2053	52281	52366	82348;82349;82350;82351	82349					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.26080322265625	2	476.260925	950.507297	-0.16392	-7.8069E-05	-0.31616	-0.00015058	-0.48008	-0.00022865	476.2606914857029	29.493	1.1799	29.343	29	30.18	-0.14952					74	27	4	0	0	0	0.27613	1	1781	1781		122.18	1.555	1	1572700			74953	2053	52281	52366	82352	82352					0.030063651776117695
SPKEKYSL	8	Unmodified	_SPKEKYSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.260925	950.507297	-0.38053	-0.00018123	0.015467	7.3663E-06	-0.36506	-0.00017386	476.26079904880373	29.633	1.1892	29.388	29.055	30.244	-0.24523	0.030032	0.00010713	NaN	122.18	65	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	916090			74954	2053	52281	52366							0.030063651776117695
SPKEPVIA	8	Unmodified	_SPKEPVIA_					0	0	0		nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.74359130859375	2	420.744911	839.475269	-0.63911	-0.0002689	-2.6212	-0.0011029	-3.2603	-0.0013718	420.7438491452349	27.388	1.8086	27.469	27.136	28.945	0.081291					105	45	4	0	0	0	0.94517	1	1439	1439		45.952	5.3793	1	10915000			74955	8652	52282	52367	82353	82353					0.04910997494482672
SPKFKTTV	8	Unmodified	_SPKFKTTV_					0	0	0		nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENSG00000072958|ENST00000291439|AP1M1	nc|ENSG00000072958|Q9BXS5-2|AP1M1	nc|ENSG00000072958|Q9BXS5-2|AP1M1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.2656555175781	2	454.26601	906.517468	-0.29691	-0.00013488	-0.46051	-0.00020919	-0.75742	-0.00034407	454.2656822931395	29.095	0.46947	28.945	28.784	29.254	-0.14952					21	10	3	0	0	0	0.87658	1	1735	1735		52.937	1.6012	1	695030			74956	1497	52283	52368	82354	82354					0.06046972902845482
SPKGKFSL	8	Unmodified	_SPKGKFSL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.25323486328125	2	432.252903	862.491253	0.079115	3.4198E-05	-0.093379	-4.0363E-05	-0.014264	-6.1656E-06	432.25281025174536	31.491	1.9903	31.25	30.711	32.701	-0.24109					118	48	5	0	0	0	0.28409	5	2093	2093;2105;2117;2129;2143		118.74	13.001	1	11840000			74957	4084	52284	52369	82355;82356;82357;82358;82359	82355					0.05450703731378326
SPKGKFSL	8	Unmodified	_SPKGKFSL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.2532653808594	2	432.252903	862.491253	-0.063506	-2.745E-05	-0.041724	-1.8036E-05	-0.10523	-4.5486E-05	432.2528357509405	31.408	1.4765	31.223	30.824	32.3	-0.18503					101	35	4	0	0	0	0.28409	2	2063	2063;2098		118.74	22.553	1	11590000			74958	4084	52284	52369	82360;82361	82360					0.05450703731378326
SPKGKFSL	8	Unmodified	_SPKGKFSL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.2532958984375	2	432.252903	862.491253	0.00060826	2.6292E-07	-0.14604	-6.3127E-05	-0.14543	-6.2864E-05	432.2527876766001	31.44	1.6414	31.288	30.928	32.57	-0.15231					109	40	5	0	0	0	0.28409	5	2062	2053;2062;2074;2085;2097		118.74	12.328	1	11876000			74959	4084	52284	52369	82362;82363;82364;82365;82366	82363					0.05450703731378326
SPKIFQKT	8	Unmodified	_SPKIFQKT_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.781005859375	2	474.779285	947.544017	5.0424	0.002394	-1.261	-0.00059869	3.7814	0.0017953	474.77853901615157	17.157	0.57019	16.906	16.752	17.322	-0.25049					23	11	4	0	0	0	0.95679	1	130	130		44.117	0	1	394130			74960	6831	52285	52370	82367	82367					0.06814661794192034
SPKKKIKL	8	Unmodified	_SPKKKIKL_					0	0	0		ENST00000555324.1_1_14:94545323-94547480:-|nuORF;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.3292236328125	2	471.328945	940.643337	2.3945	0.0011286	-2.2007	-0.0010373	0.19376	9.1324E-05	471.3277123113455	18.742	0.7461	18.499	18.074	18.82	-0.24256					28	14	4	0	0	0	1.0009	1	310	310		37.159	3.6435	1	198810			74961	1914	52286	52371	82368	82368					0.17064104478936315
SPKKKLLK	8	Unmodified	_SPKKKLLK_					0	0	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.32879638671875	2	471.328945	940.643337	0.85141	0.00040129	-0.56115	-0.00026449	0.29026	0.00013681	471.32848575390483	18.723	0.74137	18.566	18.099	18.84	-0.15637					25	14	4	0	0	0	0.95679	1	348	348		44.117	3.5442	1	224030	+		74962	24628	52287	52372	82369	82369					0.17064104478947684
SPKKKMTL	8	Oxidation (M)	_SPKKKM(Oxidation (M))TL_		SPKKKM(1)TL		SPKKKM(61)TL	0	0	1		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.78106689453125	2	474.78097	947.547388	1.7124	0.00081301	-1.7047	-0.00080934	0.0077361	3.673E-06	474.7800624203803	17.134	0.65186	16.98	16.806	17.458	-0.15403					26	12	4	0	0	0	0.77775	1	155	155		60.972	9.6365	1	265310			74963	10209	52288	52373	82370	82370		432			0.07151588576562062
SPKKKMTL	8	Oxidation (M)	_SPKKKM(Oxidation (M))TL_		SPKKKM(1)TL		SPKKKM(46)TL	0	0	1		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.78106689453125	2	474.78097	947.547388	-0.13508	-6.4132E-05	0.24566	0.00011663	0.11058	5.2501E-05	474.78091393412967	17.095	1.0014	16.887	16.662	17.663	-0.20777					29	19	3	0	0	0	0.94517	1	130	130		45.952	8.7928	1	251350			74964	10209	52288	52373	82371	82371		432			0.07151588576562062
SPKKKMTL	8	Unmodified	_SPKKKMTL_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.78369140625	2	466.783513	931.552473	0.2521	0.00011768	-0.40917	-0.00019099	-0.15707	-7.3317E-05	466.7832122533279	19.764	0.48984	19.603	19.381	19.871	-0.16079					27	9	4	0	0	0	0.30694	1	461	461		110.12	16.113	1	900300			74965	10209	52288	52374	82372	82372					0.08395892439170893
SPKKKMTL	8	Unmodified	_SPKKKMTL_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.78350830078125	2	466.783513	931.552473	1.045	0.0004878	-1.1236	-0.00052447	-0.078557	-3.6669E-05	466.7828816417297	19.828	0.97574	19.628	19.405	20.381	-0.2001					36	19	4	0	0	0	0.30694	1	465	465		110.12	21.477	1	931450			74966	10209	52288	52374	82373	82373					0.08395892439170893
SPKKKMTL	8	Unmodified	_SPKKKMTL_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.7833557128906	2	466.783513	931.552473	0.77744	0.00036289	-0.80035	-0.00037359	-0.022917	-1.0697E-05	466.7829973130539	19.83	0.78226	19.596	19.325	20.107	-0.23345					32	15	4	0	0	0	0.25561	2	442	442;453		131.03	33.559	1	829030			74967	10209	52288	52374	82374;82375	82374					0.08395892439170893
SPKKRAETL	9	Unmodified	_SPKKRAETL_					0	0	0			REV__ITPKB|p.K758E|1|0.07|ENSG00000143772|chr1:226642100-226642100|T/C|missense_variant	REV__ITPKB|p.K758E|1|0.07|ENSG00000143772|chr1:226642100-226642100|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.278076171875	2	515.306198	1028.59784	0.46658	0.00024043	3.3042	0.0017027	3.7708	0.0019431	515.307439015142	40.497	1.0411	40.385	40.055	41.097	-0.11223					64	28	3	0	0	0	0.024477	1	3569	3569		27.882	0	1	728110	+		74968	36160	52289	52375	82376	82376					0.08468834225891442
SPKKSTVL	8	Unmodified	_SPKKSTVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.2659912109375	2	430.26601	858.517468	-1.1459	-0.00049303	1.0484	0.00045109	-0.097462	-4.1934E-05	430.2663551462506	20.539	1.1179	20.539	20.274	21.392	0					53	22	4	0	0	0	0.35998	1	546	546		102.77	11.834	1	1154700			74969	5087	52290	52376	82377	82377					0.08254972902852842
SPKKSTVL	8	Unmodified	_SPKKSTVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.26593017578125	2	430.26601	858.517468	-0.3972	-0.0001709	0.24876	0.00010703	-0.14845	-6.3871E-05	430.2660252193829	20.697	1.201	20.592	20.375	21.576	-0.10477					51	24	4	0	0	0	0.50717	1	555	555		84.916	3.1995	1	1308400			74970	5087	52290	52376	82378	82378					0.08254972902852842
SPKKSTVL	8	Unmodified	_SPKKSTVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.2661437988281	2	430.26601	858.517468	1.2909	0.00055542	-1.0539	-0.00045347	0.23696	0.00010195	430.26540174111204	20.567	0.44275	20.636	20.415	20.858	0.068901					24	8	4	0	0	0	0.73796	1	509	509		64.207	10.856	1	391310			74971	5087	52290	52376	82379	82379					0.08254972902852842
SPKKSTVL	8	Unmodified	_SPKKSTVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	430.26617431640625	2	430.26601	858.517468	0.51679	0.00022236	-0.33344	-0.00014347	0.18335	7.8888E-05	430.26576254250017	20.784	0.87308	20.616	20.345	21.219	-0.16774					46	17	4	0	0	0	0.50717	2	594	583;594		84.916	8.4519	1	1239400			74972	5087	52290	52376	82380;82381	82381					0.08254972902852842
SPKKSTVL	8	Unmodified	_SPKKSTVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.2661437988281	2	430.26601	858.517468	0.8269	0.00035579	-0.59445	-0.00025577	0.23245	0.00010001	430.2656692127039	20.852	1.0337	20.656	20.236	21.27	-0.19577					48	20	4	0	0	0	0.68164	1	592	592		68.787	10.976	1	1156800			74973	5087	52290	52376	82382	82382					0.08254972902852842
SPKKSVADL	9	Unmodified	_SPKKSVADL_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7529602050781	2	472.7742	943.533846	-0.040825	-1.9301E-05	1.2744	0.0006025	1.2336	0.0005832	472.77449835697416	35.705	0.54846	35.749	35.42	35.968	0.04406					18	13	2	0	0	0	0.024495	1	2726	2726		19.997	0	1	193560			74974	1973	52291	52377	82383	82383					0.059820540689429436
SPKLTAHKV	9	Unmodified	_SPKLTAHKV_					0	0	0		ZNF430|p.H479L|1|0.25|ENSG00000118620|chr19:21057744-21057744|A/T|missense_variant;ENSG00000118620|ENST00000261560|ZNF430	ZNF430|p.H479L|1|0.25|ENSG00000118620|chr19:21057744-21057744|A/T|missense_variant	ZNF430|p.H479L|1|0.25|ENSG00000118620|chr19:21057744-21057744|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2576904296875	2	490.798009	979.581465	0.36828	0.00018075	-0.66665	-0.00032719	-0.29837	-0.00014644	490.7975449919277	39.79	0.68279	39.79	39.529	40.212	0					39	18	3	0	0	0	0.024447	1	3501	3501		19.104	0	1	1178600			74975	3696	52292	52378	82384	82384					0.09085753059798662
SPKLTTEPT	9	Unmodified	_SPKLTTEPT_					0	0	0			REV__ENSG00000174059|ENST00000310833|CD34	REV__ENSG00000174059|ENST00000310833|CD34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.29998779296875	2	487.263665	972.512776	0.10669	5.1988E-05	-0.31691	-0.00015442	-0.21022	-0.00010243	487.2634364775143	68.524	0.93254	68.231	67.781	68.714	-0.29267					40	23	2	0	0	0	0.024495	1	8255	8255		26.693	4.733	1	712970	+		74976	26831	52293	52379	82385	82385					0.025420439694244124
SPKPKRAK	8	Unmodified	_SPKPKRAK_					0	0	0		ENSG00000101605|ENST00000356443|MYOM1;nc|ENSG00000101605|P52179-2|MYOM1;MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	ENSG00000101605|ENST00000356443|MYOM1	ENSG00000101605|ENST00000356443|MYOM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.24542236328125	2	456.292894	910.571235	-0.094357	-4.3055E-05	-3.6583	-0.0016692	-3.7526	-0.0017123	456.2928032642405	24.63	0.40065	24.63	24.518	24.919	0					10	8	2	0	0	0	0.027866	1	1089	1089		18.324	0	1	14087			74977	2339	52294	52380	82386	82386					0.11237190125223151
SPKPNGPVL	9	Unmodified	_SPKPNGPVL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7637939453125	2	454.763635	907.512717	0.11802	5.367E-05	0.53917	0.00024519	0.65718	0.00029886	454.7635831775764	37.473	0.66582	37.505	37.189	37.854	0.032269					41	17	3	0	0	0	0.31037	1	3014	3014		74.255	16.444	1	1448200			74978	3943	52295	52381	82387	82387					0.055260887600866226
SPKPNGPVL	9	Unmodified	_SPKPNGPVL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	454.763635	907.512717	0.57276	0.00026047	0.45257	0.00020581	1.0253	0.00046628	454.76343523559297	37.502	0.92295	37.502	36.846	37.769	0	0.056493	-8.0572E-05	NaN	74.255	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1505000			74979	3943	52295	52381							0.055260887600866226
SPKPNGPVL	9	Unmodified	_SPKPNGPVL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	454.763635	907.512717	-0.063875	-2.9048E-05	0.58099	0.00026421	0.51711	0.00023516	454.76376193643085	37.393	1.0204	37.33	36.669	37.69	-0.063389	-0.11592	3.6224E-05	NaN	74.255	50	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1420800			74980	3943	52295	52381							0.055260887600866226
SPKPPSQQL	9	Unmodified	_SPKPPSQQL_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2718200683594	2	491.271824	980.529095	-0.27754	-0.00013635	0.24081	0.00011831	-0.036723	-1.8041E-05	491.27158704437113	33.796	1.299	33.796	32.79	34.09	0					58	34	3	0	0	0	0.10464	3	2466	2456;2466;2478		109.48	16.283	1	3327500			74981	771	52296	52382	82388;82389;82390	82389					0.03805169926192775
SPKPPSQQL	9	Unmodified	_SPKPPSQQL_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2716979980469	2	491.271824	980.529095	-0.45949	-0.00022574	0.9548	0.00046907	0.49531	0.00024333	491.27171556007704	33.619	1.1837	33.625	32.776	33.959	0.0066261					64	31	3	0	0	0	0.03201	3	2416	2416;2428;2438		139.97	10.747	1	3777300			74982	771	52296	52382	82391;82392;82393	82391					0.03805169926192775
SPKPPSQQL	9	Unmodified	_SPKPPSQQL_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.27178955078125	2	491.271824	980.529095	-0.0079638	-3.9124E-06	0.70339	0.00034556	0.69543	0.00034164	491.27154358880944	33.597	1.5249	33.654	32.571	34.096	0.056568					70	39	3	0	0	0	0.053401	2	2372	2372;2394		127.46	10.861	1	3308500			74983	771	52296	52382	82394;82395	82394					0.03805169926192775
SPKPVSSTV	9	Unmodified	_SPKPVSSTV_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.25341796875	2	451.2531	900.491647	-0.43934	-0.00019825	0.73225	0.00033043	0.29291	0.00013218	451.25330052578977	28.057	0.97355	28.057	27.804	28.778	0					36	23	2	0	0	0	0.053401	2	1611	1599;1611		127.46	28.832	1	1369500			74984	1982	52297	52383	82396;82397	82397					0.03742078660582138
SPKPVSSTV	9	Unmodified	_SPKPVSSTV_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.2532043457031	2	451.2531	900.491647	-0.47868	-0.00021601	0.76413	0.00034481	0.28544	0.00012881	451.25326447833	27.736	0.5966	27.817	27.571	28.168	0.081293					36	14	3	0	0	0	0.086035	1	1507	1507		115.49	38.176	1	1209100			74985	1982	52297	52383	82398	82398					0.03742078660582138
SPKPVSSTV	9	Unmodified	_SPKPVSSTV_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.2531	900.491647	-0.26568	-0.00011989	0.41721	0.00018827	0.15153	6.8378E-05	451.25320835670146	28.032	0.79977	28.027	27.616	28.416	-0.0042019	0.060327	-0.00019583	NaN	127.46	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374600			74986	1982	52297	52383							0.03742078660582138
SPKSAPGMESI	11	Oxidation (M)	_SPKSAPGM(Oxidation (M))ESI_		SPKSAPGM(1)ESI		SPKSAPGM(94)ESI	0	0	1			REV__nc|ENSG00000176160|Q4G112-2|HSF5	REV__nc|ENSG00000176160|Q4G112-2|HSF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.2719116210938	2	560.271164	1118.52777	-0.67597	-0.00037873	0.87597	0.00049078	0.2	0.00011205	560.2716558155962	93.228	2.7313	93.223	92.862	95.593	-0.0042038					190	64	6	0	0	0	0.25451	1	11793	11793		93.598	11.357	1	17833000	+		74987	27001	52298	52384	82399	82399		803			-0.0267483222487499
SPKSHPASF	9	Unmodified	_SPKSHPASF_					0	0	0			REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.259521484375	2	479.243067	956.47158	-0.14628	-7.0104E-05	4.1576	0.0019925	4.0114	0.0019224	479.2448442425229	25.206	0.52887	25.206	24.874	25.403	0					18	12	2	0	0	0	0.024436	1	1149	1149		38.806	26.599	1	104350	+		74988	20999	52299	52385	82400	82400					-0.008396722793804656
SPKSPTAAL	9	Unmodified	_SPKSPTAAL_					0	0	0		ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.2475280761719	2	436.247818	870.481082	-0.43006	-0.00018761	-0.47564	-0.0002075	-0.9057	-0.00039511	436.24751330056387	35.314	1.9258	35.314	34.408	36.334	0					138	51	4	0	0	0	0.16638	1	2717	2717		95.815	19.041	1	12416000			74989	5216	52300	52386	82401	82401					0.04066096006135922
SPKSPTAAL	9	Unmodified	_SPKSPTAAL_					0	0	0		ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.2472839355469	2	436.247818	870.481082	-0.80408	-0.00035078	-0.052383	-2.2852E-05	-0.85647	-0.00037363	436.2477168788436	35.189	2.4673	35.168	34.244	36.711	-0.021763					144	65	5	0	0	0	0.22902	2	2665	2642;2665		85.161	2.8558	1	12541000			74990	5216	52300	52386	82402;82403	82403					0.04066096006135922
SPKSPTAAL	9	Unmodified	_SPKSPTAAL_					0	0	0		ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	ENSG00000138180|ENST00000371485|CEP55	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.2476501464844	2	436.247818	870.481082	-0.07547	-3.2924E-05	-0.90278	-0.00039383	-0.97825	-0.00042676	436.2473427352964	35.168	1.5459	35.212	34.593	36.139	0.044056					129	40	5	0	0	0	0.091713	3	2609	2609;2632;2644		113.41	19.405	1	12445000			74991	5216	52300	52386	82404;82405;82406	82404					0.04066096006135922
SPKTLRLKKTA	11	Unmodified	_SPKTLRLKKTA_					0	0	0			REV__nc|ENSG00000149262|Q96HW7-2|INTS4	REV__nc|ENSG00000149262|Q96HW7-2|INTS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	621.900634765625	2	621.898254	1241.78196	0.28795	0.00017907	3.7257	0.002317	4.0136	0.0024961	621.9003556983982	105.24	0.4091	105.24	105.02	105.43	0.00096893					30	12	3	0	0	0	1.0748	1	13473	13473		18.262	4.808	1	2214000	+		74992	24666	52301	52387	82407	82407					0.17073602656591902
SPKTSKVL	8	Unmodified	_SPKTSKVL_					0	0	0		nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28;nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;nc|ENSG00000088756|Q9P2N2-5|ARHGAP28	nc|ENSG00000088756|Q9P2N2-2|ARHGAP28	nc|ENSG00000088756|Q9P2N2-2|ARHGAP28	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.2662658691406	2	430.26601	858.517468	0.8269	0.00035579	-0.59445	-0.00025577	0.23245	0.00010001	430.2656692127039	20.852	1.0337	20.656	20.236	21.27	-0.19577					48	20	4	0	0	0	0.68164	1	580	580		68.787	0	1	1156800			74993	1873	52302	52388	82408	82408					0.08254972902852842
SPLAFWMR	8	Unmodified	_SPLAFWMR_					0	0	0		ENST00000532161.5_2_11:102322944-102323061:-|nuORF	ENST00000532161.5_2_11:102322944-102323061:-|nuORF	ENST00000532161.5_2_11:102322944-102323061:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.25958251953125	2	504.260205	1006.50586	-0.61728	-0.00031127	-1.064	-0.00053653	-1.6813	-0.0008478	504.2597814903842	22.762	0.87179	22.577	22.189	23.061	-0.18539					54	18	5	0	0	0	0.93274	2	819	819;844		47.916	5.4411	1	3460500			74994	16281	52303	52389	82409;82410	82409					0.0028645260787243387
SPLALRQP	8	Unmodified	_SPLALRQP_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78790283203125	2	441.263802	880.513051	0.18338	8.0917E-05	-2.0747	-0.00091547	-1.8913	-0.00083455	441.26355620298654	42.909	0.78466	42.77	42.278	43.063	-0.13929					26	21	2	0	0	0	0.027866	1	3950	3950		16.473	0	1	80474			74995	2966	52304	52390	82411	82411					0.06801508479941276
SPLAPLPH	8	Unmodified	_SPLAPLPH_					0	0	0			REV__ENST00000600466.1_1_19:50304812-50304941:+|nuORF	REV__ENST00000600466.1_1_19:50304812-50304941:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.23846435546875	2	416.239796	830.465038	0.017107	7.1205E-06	-2.768	-0.0011521	-2.7509	-0.001145	416.2384827656349	21.809	1.312	21.809	21.491	22.803	0					59	27	4	0	0	0	0.98906	1	705	705		39.021	0	1	569180	+		74996	35845	52305	52391	82412	82412					0.04302434559906487
SPLAPRPL	8	Unmodified	_SPLAPRPL_					0	0	0			REV__ENST00000463290.5_1_1:161275352-161275394:-|nuORF	REV__ENST00000463290.5_1_1:161275352-161275394:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77508544921875	2	425.760895	849.507237	-0.19898	-8.4719E-05	-1.9293	-0.00082144	-2.1283	-0.00090616	425.7602250744419	42.332	0.23771	42.2	42.149	42.386	-0.13219					10	6	2	0	0	0	0.027866	1	3871	3871		19.36	5.5846	1	139620	+		74997	32930	52306	52392	82413	82413					0.07646409968276657
SPLAYNKEEEI	11	Unmodified	_SPLAYNKEEEI_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	431.551025390625	3	431.550475	1291.6296	-0.25191	-0.00010871	1.2391	0.00053474	0.98721	0.00042603	431.5510682554527	36.495	1.6071	36.495	36.162	37.769	0					113	43	4	0	0	0	0.84303	2	2882	2882;2929		55.084	10.062	1	18143000	+		74998	36725	52307	52393	82414;82415	82414					-0.004552626014628913
SPLCLLLAE	9	Unmodified	_SPLCLLLAE_					0	0	0		ENST00000497336.1_1_X:48316945-48325440:-|nuORF	ENST00000497336.1_1_X:48316945-48325440:-|nuORF	ENST00000497336.1_1_X:48316945-48325440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7492370605469	2	479.767529	957.520504	-0.12223	-5.8641E-05	3.2421	0.0015554	3.1198	0.0014968	479.7689907717742	32.497	0.64504	32.56	32.278	32.923	0.062885					48	16	4	0	0	0	0.024405	1	2260	2260		27.882	10.517	1	1114300			74999	15589	52308	52394	82416	82416					0.04004479965340124
SPLDRKEV	8	Unmodified	_SPLDRKEV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.3106384277344	2	472.263999	942.513445	0.0014557	6.8747E-07	-0.037434	-1.7679E-05	-0.035978	-1.6991E-05	472.2637763486703	34.689	0.62415	34.678	34.292	34.916	-0.010239					22	15	2	0	0	0	0.027866	1	2542	2542		24.203	11.244	1	225420	+		75000	25017	52309	52395	82417	82417					0.039888834091470926
SPLDSLKIM	9	Oxidation (M)	_SPLDSLKIM(Oxidation (M))_		SPLDSLKIM(1)		SPLDSLKIM(74)	0	0	1			REV__nc|ENSG00000172167|Q96DY7-3|MTBP	REV__nc|ENSG00000172167|Q96DY7-3|MTBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2742614746094	2	510.275718	1018.53688	0.077342	3.9466E-05	-2.9563	-0.0015085	-2.879	-0.0014691	510.2740357277546	75.546	0.86058	75.37	74.986	75.846	-0.17548					51	21	4	0	0	0	0.31037	1	8940	8940		74.255	10.949	1	1675100	+		75001	26640	52310	52396	82418	82418		786			0.028355611314509588
SPLDSSARDQP	11	Unmodified	_SPLDSSARDQP_					0	0	0			REV__ENSG00000052850|ENST00000652299|ALX4	REV__ENSG00000052850|ENST00000652299|ALX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	587.231201171875	2	586.780741	1171.54693	-1.2571	-0.00073765	3.7433	0.0021965	2.4861	0.0014588	586.7829689916581	48.726	0.40699	48.625	48.434	48.841	-0.1008					20	10	2	0	0	0	0.024806	1	4874	4874		51.528	14.02	1	182060	+		75002	20176	52311	52397	82419	82419					-0.03198159609632967
SPLFLKLN	8	Unmodified	_SPLFLKLN_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.265625	2	466.284203	930.553853	-0.096823	-4.5147E-05	3.1675	0.0014769	3.0707	0.0014318	466.2856678191599	46.48	0.4543	46.219	46.006	46.461	-0.26118					15	11	2	0	0	0	0.027866	1	4459	4459		30.504	19.638	1	168260			75003	7784	52312	52398	82420	82420					0.08579849799548356
SPLGILSPSL	10	Unmodified	_SPLGILSPSL_					0	0	0		ENSG00000158711|ENST00000357992|ELK4;nc|ENSG00000158711|P28324-2|ELK4	ENSG00000158711|ENST00000357992|ELK4	ENSG00000158711|ENST00000357992|ELK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7694396972656	2	492.292225	982.569897	-0.55631	-0.00027387	-2.8783	-0.001417	-3.4346	-0.0016908	492.2912266314658	28.027	0.47031	28.027	27.804	28.274	0					19	11	2	0	0	0	0.03519	1	1587	1587		84.916	18.486	1	113720			75004	6695	52313	52399	82421	82421					0.07791511245807214
SPLGILSPSL	10	Unmodified	_SPLGILSPSL_					0	0	0		ENSG00000158711|ENST00000357992|ELK4;nc|ENSG00000158711|P28324-2|ELK4	ENSG00000158711|ENST00000357992|ELK4	ENSG00000158711|ENST00000357992|ELK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7695007324219	2	492.292225	982.569897	-0.46335	-0.0002281	-2.365	-0.0011643	-2.8283	-0.0013924	492.2916190315372	27.998	0.59428	27.994	27.692	28.286	-0.0042019					24	14	2	0	0	0	0.03519	1	1594	1594		47.657	0	1	122240			75005	6695	52313	52399	82422	82422					0.07791511245807214
SPLGLKRV	8	Unmodified	_SPLGLKRV_					0	0	0		ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2187194824219	2	435.281995	868.549437	-0.82508	-0.00035914	0.4346	0.00018917	-0.39048	-0.00016997	435.28195941872445	30.579	0.29085	30.579	30.426	30.717	0					10	6	2	0	0	0	0.027866	1	1958	1958		26.796	19.106	1	36420			75006	16472	52314	52400	82423	82423					0.10990385376658196
SPLGLKRV	8	Unmodified	_SPLGLKRV_					0	0	0		ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.281995	868.549437	-0.39402	-0.00017151	-0.2691	-0.00011713	-0.66312	-0.00028864	435.2815954952037	30.375	0.33086	30.449	30.296	30.626	0.074314	-0.077789	-8.4768E-05	NaN	26.796	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38180			75007	16472	52314	52400							0.10990385376658196
SPLHPLVT	8	Unmodified	_SPLHPLVT_					0	0	0			REV__ENST00000526661.5_1_11:836524-836704:+|nuORF	REV__ENST00000526661.5_1_11:836524-836704:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.2532043457031	2	432.252903	862.491253	-0.063506	-2.745E-05	-0.041724	-1.8036E-05	-0.10523	-4.5486E-05	432.2528357509405	31.408	1.4765	31.223	30.824	32.3	-0.18503					101	35	4	0	0	0	0.37125	1	2074	2074		101.21	2.5822	1	11590000	+		75008	34455	52315	52401	82424	82424					0.05450703731378326
SPLIHLGTK	9	Unmodified	_SPLIHLGTK_					0	0	0			REV__ENST00000318308.10_1_14:89077197-89077239:+|nuORF	REV__ENST00000318308.10_1_14:89077197-89077239:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2586975097656	2	483.292559	964.570566	0.039816	1.9243E-05	-0.31331	-0.00015142	-0.2735	-0.00013218	483.2922767761171	27.446	0.5443	27.29	27.061	27.605	-0.15664					27	12	3	0	0	0	0.024367	1	1488	1488		36.447	0	1	408580	+		75009	30304	52316	52402	82425	82425					0.08686350685525213
SPLINVLMA	9	Unmodified	_SPLINVLMA_					0	0	0		ENSG00000205497|ENST00000641898|OR51A4;ENSG00000205496|ENST00000380371|OR51A2	ENSG00000205497|ENST00000641898|OR51A4	ENSG00000205497|ENST00000641898|OR51A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27734375	2	479.275521	956.536489	0.2758	0.00013219	3.6384	0.0017438	3.9142	0.001876	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.85329	1	10050	10050		35.618	5.1146	1	7407200			75010	10431	52317	52403	82426	82426					0.05648186202256511
SPLKSRVPE	9	Unmodified	_SPLKSRVPE_					0	0	0			REV__ENSG00000138622|ENST00000261917|HCN4	REV__ENSG00000138622|ENST00000261917|HCN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3155517578125	2	506.792924	1011.57129	-0.36491	-0.00018493	3.8193	0.0019356	3.4544	0.0017506	506.7944312041261	69.211	0.60036	69.226	68.865	69.465	0.015129					25	15	2	0	0	0	0.024511	1	8195	8195		13.454	0	1	411250	+		75011	23869	52318	52404	82427	82427					0.06597145334569632
SPLLKSGPFG	10	Unmodified	_SPLLKSGPFG_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7999267578125	2	501.784567	1001.55458	-1.2957	-0.00065014	-4.3364	-0.002176	-5.6321	-0.0028261	501.78204288558646	44.486	0.68139	44.267	44.142	44.823	-0.21939					31	17	3	0	0	0	0.03519	1	4187	4187		30.318	7.2752	1	784960			75012	3254	52319	52405	82428	82428					0.053866444486288856
SPLLLLVLC	9	Unmodified	_SPLLLLVLC_					0	0	0			REV__nc|ENSG00000176510|Q8NH08|OR10AC1	REV__nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.77691650390625	2	485.803914	969.593275	-1.2805	-0.00062209	-3.7854	-0.0018389	-5.0659	-0.002461	485.8022176913433	29.655	0.156	29.734	29.646	29.802	0.078344					5	3	2	0	0	0	0.024517	1	1792	1792		19.36	1.995	1	77390	+		75013	36964	52320	52406	82429	82429					0.10726233758771286
SPLLLSLLPL	10	Unmodified	_SPLLLSLLPL_					0	0	0			REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2407836914062	2	533.349543	1064.68453	-0.2173	-0.0001159	-3.09	-0.0016481	-3.3073	-0.001764	533.3477475241109	34.398	0.41928	34.174	33.96	34.379	-0.22412					14	10	2	0	0	0	0.03519	1	2508	2508		21.96	5.4867	1	160260	+		75014	31628	52321	52407	82430	82430					0.15477820727778635
SPLLPAASPET	11	Unmodified	_SPLLPAASPET_					0	0	0		nc|ENSG00000187642|Q5SV97-3|PERM1;ENSG00000187642|ENST00000433179|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8215942382812	2	541.790047	1081.56554	0.0097491	5.282E-06	-1.6638	-0.00090141	-1.654	-0.00089612	541.7894046183561	105.76	0.78415	105.76	105.28	106.06	0					42	24	2	0	0	0	0.024736	1	13599	13599		36.447	19.974	1	139730			75015	9645	52322	52408	82431	82431					0.02802002032240125
SPLLPAIAT	9	Unmodified	_SPLLPAIAT_					0	0	0		ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7	ENSG00000170537|ENST00000304381|TMC7	ENSG00000170537|ENST00000304381|TMC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.767822265625	2	441.768386	881.522219	0.10055	4.4418E-05	-1.228	-0.00054249	-1.1275	-0.00049807	441.76794852794825	102.93	1.5122	102.8	102.45	103.96	-0.12723					102	35	5	0	0	0	0.92825	1	12807	12807		30.504	6.3009	1	19625000			75016	8051	52323	52409	82432	82432					0.07671857045602337
SPLLPQIKPN	10	Unmodified	_SPLLPQIKPN_					0	0	0		ENST00000308724.9_1_14:24028794-24028884:-|nuORF	ENST00000308724.9_1_14:24028794-24028884:-|nuORF	ENST00000308724.9_1_14:24028794-24028884:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8302612304688	2	553.832049	1105.64954	0.19124	0.00010592	-3.8675	-0.0021419	-3.6763	-0.002036	553.8297540429725	101.45	0.95807	101.45	101.15	102.11	-0.0054474					53	21	4	0	0	0	1.0122	1	12923	12923		44.377	3.599	1	742850			75017	12035	52324	52410	82433	82433					0.10094577919812764
SPLLQHAW	8	Unmodified	_SPLLQHAW_					0	0	0			REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.26031494140625	2	476.255977	950.497401	0.13189	6.2815E-05	1.1294	0.0005379	1.2613	0.00060072	476.2559885604001	43.416	1.1182	43.416	43.002	44.12	0					42	30	2	0	0	0	0.027866	1	4035	4035		40.573	13.777	1	140410	+		75018	35481	52325	52411	82434	82434					0.02017221962887561
SPLLQHAW	8	Unmodified	_SPLLQHAW_					0	0	0			REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2604064941406	2	476.255977	950.497401	0.32321	0.00015393	0.49437	0.00023545	0.81759	0.00038938	476.25576392380094	43.494	0.98284	43.525	43.153	44.136	0.030823					34	26	2	0	0	0	0.027866	1	3997	3997		31.955	6.5047	1	146030	+		75019	35481	52325	52411	82435	82435					0.02017221962887561
SPLLQHAW	8	Unmodified	_SPLLQHAW_					0	0	0			REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.2608947753906	2	476.255977	950.497401	-0.19364	-9.2224E-05	0.57682	0.00027471	0.38318	0.00018249	476.25598160005444	40.813	0.25554	40.586	40.474	40.73	-0.22679					11	6	2	0	0	0	0.027866	1	3556	3556		38.806	19.446	1	111970	+		75020	35481	52325	52411	82436	82436					0.02017221962887561
SPLLQHAW	8	Unmodified	_SPLLQHAW_					0	0	0			REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	REV__ENST00000577783.2_1_17:77079170-77080166:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2600402832031	2	476.255977	950.497401	-0.87555	-0.00041699	0.37171	0.00017703	-0.50384	-0.00023996	476.25578053619336	43.576	0.7586	43.356	43.068	43.826	-0.21939					26	20	2	0	0	0	0.027866	1	3953	3953		24.203	0	1	156180	+		75021	35481	52325	52411	82437	82437					0.02017221962887561
SPLLQLALI	9	Unmodified	_SPLLQLALI_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.31298828125	2	484.312961	966.611368	0.32462	0.00015722	-0.57586	-0.0002789	-0.25124	-0.00012168	484.31246372669887	99.613	0.77578	99.613	99.135	99.91	0					44	17	3	0	0	0	0.25032	1	12754	12754		82.305	8.05	1	1008200	+		75022	28398;37672	52326	52412	82438	82438					0.12672692005139652
SPLLQLALI	9	Unmodified	_SPLLQLALI_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.31243896484375	2	484.312961	966.611368	-0.021439	-1.0383E-05	-0.05842	-2.8294E-05	-0.079859	-3.8677E-05	484.31268608515995	99.524	0.92699	99.534	99.046	99.973	0.010239					54	21	4	0	0	0	0.11092	4	12724	12660;12699;12711;12724		108.09	17.311	1	882620	+		75023	28398;37672	52326	52412	82439;82440;82441;82442	82442					0.12672692005139652
SPLLQLALI	9	Unmodified	_SPLLQLALI_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.3127136230469	2	484.312961	966.611368	0.020142	9.7552E-06	-0.69318	-0.00033571	-0.67303	-0.00032596	484.31221817997033	99.631	2.0202	99.626	99.21	101.23	-0.0050888					75	50	3	0	0	0	0.13494	1	12652	12652		102.77	10.583	1	1132000	+		75024	28398;37672	52326	52412	82443	82443					0.12672692005139652
SPLLRKQQ	8	Unmodified	_SPLLRKQQ_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7768859863281	2	485.295633	968.576714	-1.456	-0.0007066	0.38401	0.00018636	-1.072	-0.00052024	485.29590634464444	29.58	0.83132	29.58	29.186	30.017	0					55	20	4	0	0	0	0.027866	1	1847	1847		40.573	6.4001	1	3007600	+		75025	24084	52327	52413	82444	82444					0.09116868917044485
SPLLTPLFL	9	Unmodified	_SPLLTPLFL_					0	0	0		ENSG00000181652|ENST00000639579|ATG9B;nc|ENSG00000181652|Q674R7-2|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8075866699219	2	500.807511	999.600469	0.056246	2.8169E-05	0.51354	0.00025719	0.56979	0.00028536	500.8075148987408	107.15	0.49437	107.15	106.92	107.41	-0.0034866					20	12	2	0	0	0	0.59099	1	13714	13714		53.351	3.3269	1	235980			75026	9058	52328	52414	82445	82445					0.10065289630847474
SPLLTPLFL	9	Unmodified	_SPLLTPLFL_					0	0	0		ENSG00000181652|ENST00000639579|ATG9B;nc|ENSG00000181652|Q674R7-2|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.8070983886719	2	500.807511	999.600469	0.0087156	4.3648E-06	0.52207	0.00026146	0.53078	0.00026582	500.807541045539	107.06	0.52048	106.94	106.74	107.26	-0.1238					31	16	3	0	0	0	0.70186	1	13333	13333		45.952	7.1458	1	261950			75027	9058	52328	52414	82446	82446					0.10065289630847474
SPLMDPPSL	9	Unmodified	_SPLMDPPSL_					0	0	0			REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF	REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7435607910156	2	478.741511	955.468469	-0.31146	-0.00014911	4.315	0.0020658	4.0036	0.0019167	478.7434155486396	29.965	1.069	29.974	29.637	30.706	0.0086708					69	25	4	0	0	0	0.08613	4	1880	1852;1862;1880;1894		115.46	13.272	1	5988800	+		75028	35424	52329	52415	82447;82448;82449;82450	82449					-0.011046834484204737
SPLMDPPSL	9	Unmodified	_SPLMDPPSL_					0	0	0			REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF	REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	478.741511	955.468469	-0.31146	-0.00014911	4.315	0.0020658	4.0036	0.0019167	478.7434155486396	29.965	1.069	29.974	29.637	30.706	0.0086708	0.091291	-0.00029686	NaN	115.46	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5988800	+		75029	35424	52329	52415							-0.011046834484204737
SPLMPSVEE	9	Unmodified	_SPLMPSVEE_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7754821777344	2	494.736425	987.458298	-0.39363	-0.00019474	3.9157	0.0019372	3.5221	0.0017425	494.73931499739354	21.299	0.19573	21.209	21.059	21.255	-0.090094					5	3	2	0	0	0	0.024436	1	633	633		30.504	5.0535	1	5280.2	+		75030	28866	52330	52416	82451	82451					-0.03593291173638136
SPLPAKYIDL	10	Unmodified	_SPLPAKYIDL_					0	0	0		nc|ENSG00000162576|Q9BRK3-4|MXRA8;ENST00000473097.5_1_1:1288733-1289815:-|nuORF;nc|ENSG00000162576|Q9BRK3-3|MXRA8;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	nc|ENSG00000162576|Q9BRK3-4|MXRA8	nc|ENSG00000162576|Q9BRK3-4|MXRA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.27392578125	2	558.818607	1115.62266	1.1047	0.00061731	-1.1367	-0.00063519	-0.031984	-1.7873E-05	558.8177961433097	96.375	0.94523	96.377	96.115	97.06	0.0020752					45	21	4	0	0	0	0.03519	1	12218	12218		39.253	3.6345	1	344090			75031	18435	52331	52417	82452	82452					0.06947469308624932
SPLPFWLY	8	Unmodified	_SPLPFWLY_					0	0	0		PAIP1-C5orf28|1|fusion;PAIP1-C5orf28|2|fusion;ENSG00000151881|ENST00000397080|TMEM267;PAIP1-C5orf28|3|fusion	PAIP1-C5orf28|1|fusion	PAIP1-C5orf28|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.8443908691406	2	511.770929	1021.5273	0.040479	2.0716E-05	-1.2132	-0.00062087	-1.1727	-0.00060015	511.77239951659976	76.58	0.51259	76.328	76.186	76.699	-0.25162					23	11	3	0	0	0	0.027866	1	9083	9083		46.766	12.594	1	149070			75032	6237	52332	52418	82453	82453					0.017401609082185132
SPLPGTAPPTP	11	Unmodified	_SPLPGTAPPTP_					0	0	0			REV__ENST00000556654.5_1_14:23299121-23302650:+|nuORF	REV__ENST00000556654.5_1_14:23299121-23302650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2566528320312	2	517.779482	1033.54441	-0.10371	-5.37E-05	-0.22452	-0.00011625	-0.32823	-0.00016995	518.2807913722636	81.786	1.063	81.656	81.339	82.402	-0.13075					41	25	3	0	0	0	0.02479	1	10186	10186		69.628	27.231	1	227510	+		75033	35044	52333	52419	82454	82454					0.028980367233771176
SPLPGTAPPTP	11	Unmodified	_SPLPGTAPPTP_					0	0	0			REV__ENST00000556654.5_1_14:23299121-23302650:+|nuORF	REV__ENST00000556654.5_1_14:23299121-23302650:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.779482	1033.54441	-0.70082	-0.00036287	-0.066906	-3.4642E-05	-0.76772	-0.00039751	518.280816041933	81.672	0.98645	81.672	81.506	82.492	0	0.0080606	0.00011893	NaN	69.628	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233650	+		75034	35044	52333	52419							0.028980367233771176
SPLPLPHFH	9	Unmodified	_SPLPLPHFH_					0	0	0			REV__ENST00000523752.5_1_8:22877945-22878461:-|nuORF	REV__ENST00000523752.5_1_8:22877945-22878461:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.799560546875	2	522.784902	1043.55525	-0.012152	-6.3527E-06	2.9916	0.001564	2.9795	0.0015576	522.7868261096048	19.535	0.23957	19.535	19.317	19.556	0					7	4	3	0	0	0	0.024535	1	402	402		25.45	0	1	111580	+		75035	34360	52334	52420	82455	82455					0.03521483888312105
SPLPLSGASF	10	Unmodified	_SPLPLSGASF_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.3002624511719	2	488.260925	974.507297	0.34586	0.00016887	3.2606	0.001592	3.6064	0.0017609	488.26229134973886	58.442	0.62999	58.442	58.193	58.823	0					37	16	3	0	0	0	0.03519	1	6596	6596		51.335	7.2187	1	1449500			75036	10220	52335	52421	82456	82456					0.019023651776251427
SPLPYGDSF	9	Unmodified	_SPLPYGDSF_					0	0	0			REV__nc|ENSG00000122025|P36888-2|FLT3	REV__nc|ENSG00000122025|P36888-2|FLT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7693176269531	2	491.729458	981.444362	-0.1789	-8.7972E-05	3.7783	0.0018579	3.5994	0.0017699	491.73127039876374	42.53	0.37862	42.299	42.101	42.48	-0.23029					12	9	2	0	0	0	0.023355	1	3839	3839		55.504	0	1	126640	+		75037	22625	52336	52422	82457	82457					-0.04710200610418269
SPLQDETLD	9	Unmodified	_SPLQDETLD_					0	0	0			REV__ENSG00000226784|ENST00000458128|PGAM4	REV__ENSG00000226784|ENST00000458128|PGAM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2840270996094	2	509.240386	1016.46622	-0.2845	-0.00014488	1.8705	0.00095252	1.586	0.00080765	509.241753468277	46.634	0.33803	46.373	46.123	46.461	-0.26118					19	8	3	0	0	0	0.024427	1	4473	4473		34.173	7.4796	1	167220	+		75038	28878	52337	52423	82458	82458					-0.041354406525101695
SPLQILPPSG	10	Unmodified	_SPLQILPPSG_					0	0	0		nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.758544921875	2	504.78985	1007.56515	-1.1021	-0.0005563	1.3672	0.00069017	0.26518	0.00013386	504.7905144336494	59.939	0.56442	60.018	59.791	60.356	0.078888					29	14	3	0	0	0	0.03519	1	6756	6756		25.574	0	1	555480			75039	5179	52338	52424	82459	82459					0.061666271030503594
SPLRGGSSL	9	Unmodified	_SPLRGGSSL_					0	0	0		ENSG00000243364|ENST00000368409|EFNA4;nc|ENSG00000243364|P52798-2|EFNA4;nc|ENSG00000243364|P52798-3|EFNA4	ENSG00000243364|ENST00000368409|EFNA4	ENSG00000243364|ENST00000368409|EFNA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.2430419921875	2	437.243067	872.47158	-0.038187	-1.6697E-05	0.1823	7.9708E-05	0.14411	6.3011E-05	437.2430533487454	34.189	0.8129	34.189	33.855	34.668	0					36	20	2	0	0	0	0.10464	1	2533	2533		109.48	6.705	1	2436800			75040	10808	52339	52425	82460	82460					0.03024327720618203
SPLRGGSSL	9	Unmodified	_SPLRGGSSL_					0	0	0		ENSG00000243364|ENST00000368409|EFNA4;nc|ENSG00000243364|P52798-2|EFNA4;nc|ENSG00000243364|P52798-3|EFNA4	ENSG00000243364|ENST00000368409|EFNA4	ENSG00000243364|ENST00000368409|EFNA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2248840332031	2	437.243067	872.47158	0.089634	3.9192E-05	0.01872	8.1852E-06	0.10835	4.7377E-05	437.2429747813626	34.012	0.81524	34.008	33.715	34.53	-0.0045624					36	20	2	0	0	0	0.019184	1	2495	2495		114.89	13.683	1	2135300			75041	10808	52339	52425	82461	82461					0.03024327720618203
SPLRGGSSL	9	Unmodified	_SPLRGGSSL_					0	0	0		ENSG00000243364|ENST00000368409|EFNA4;nc|ENSG00000243364|P52798-2|EFNA4;nc|ENSG00000243364|P52798-3|EFNA4	ENSG00000243364|ENST00000368409|EFNA4	ENSG00000243364|ENST00000368409|EFNA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.242919921875	2	437.243067	872.47158	-0.12718	-5.5607E-05	0.34311	0.00015002	0.21594	9.4417E-05	437.24312439468343	33.976	1.0754	34.027	33.687	34.762	0.050255					44	26	2	0	0	0	0.16539	1	2455	2455		96.034	5.6638	1	2117800			75042	10808	52339	52425	82462	82462					0.03024327720618203
SPLRLPQV	8	Unmodified	_SPLRLPQV_					0	0	0			REV__ENST00000526004.1_1_14:25101006-25102204:-|nuORF	REV__ENST00000526004.1_1_14:25101006-25102204:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.27740478515625	2	455.279452	908.544351	2.4458	0.0011135	-2.3067	-0.0010502	0.13904	6.3302E-05	455.2782682409524	18.89	0.39585	18.648	18.424	18.82	-0.24256					16	7	3	0	0	0	1.0574	1	342	342		23.042	0	1	102360	+		75043	34427	52340	52426	82463	82463					0.08642081514028632
SPLRSTSTP	9	Unmodified	_SPLRSTSTP_					0	0	0		ENST00000504186.5_1_11:67067055-67067602:+|nuORF;ENST00000447274.6_1_11:67067055-67068480:+|nuORF	ENST00000504186.5_1_11:67067055-67067602:+|nuORF	ENST00000504186.5_1_11:67067055-67067602:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2537536621094	2	473.253631	944.49271	-0.47873	-0.00022656	0.3415	0.00016162	-0.13723	-6.4946E-05	473.25372115673474	30.216	1.042	30.29	30.045	31.087	0.074314					54	24	3	0	0	0	0.17822	1	1877	1877		93.195	2.4188	1	3721600			75044	14464	52341	52427	82464	82464					0.018242930294718462
SPLSDPYLHPI	11	Unmodified	_SPLSDPYLHPI_					0	0	0			REV__ENST00000496379.5_1_15:91433070-91435551:+|nuORF	REV__ENST00000496379.5_1_15:91433070-91435551:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.5503845214844	3	413.552039	1237.63429	-0.11815	-4.8862E-05	-3.7959	-0.0015698	-3.914	-0.0016187	413.55049374276626	29.569	1.5636	29.572	29.055	30.618	0.0031357					57	38	2	0	0	0	0.90172	1	1827	1827		51.528	13.928	1	5491400	+		75045	33823	52342	52428	82465	82465					0.024976663319421277
SPLSGDIKL	9	Unmodified	_SPLSGDIKL_					0	0	0		ENSG00000215547|ENST00000400552|DEFB115	ENSG00000215547|ENST00000400552|DEFB115	ENSG00000215547|ENST00000400552|DEFB115	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2687072753906	2	465.26875	928.522947	0.59601	0.00027731	-1.021	-0.00047502	-0.42494	-0.00019771	465.26797271681784	42.099	1.0415	42.125	41.784	42.825	0.026016					69	29	4	0	0	0	0.14024	1	3782	3782		101.6	10.824	1	7104100			75046	10591	52343	52429	82466	82466					0.055826516946467564
SPLSSCLPDP	10	Unmodified	_SPLSSCLPDP_					0	0	0			REV__ENST00000477541.1_1_6:32916643-32917850:-|nuORF	REV__ENST00000477541.1_1_6:32916643-32917850:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.29248046875	2	508.241875	1014.4692	-0.28805	-0.0001464	1.5751	0.00080052	1.287	0.00065412	508.24112129296475	50.528	0.13315	50.608	50.543	50.676	0.08099					5	3	2	0	0	0	0.03519	1	5236	5236		26.693	10.22	1	113630	+		75047	33335	52344	52430	82467	82467					-0.03745888799369368
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.28448486328125	2	473.2844	944.554247	0.72451	0.0003429	-1.1205	-0.0005303	-0.39597	-0.0001874	473.28375352596163	53.617	1.0198	53.617	53.337	54.357	0					61	28	4	0	0	0	0.013337	2	5805	5805;5818		176.44	23.409	1	2682600			75048	8077	52345	52431	82468;82469	82468					0.079752247287729
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.28411865234375	2	473.2844	944.554247	-0.04292	-2.0313E-05	-0.27943	-0.00013225	-0.32235	-0.00015256	473.28416199314853	53.67	0.74836	53.523	53.239	53.987	-0.14723					52	20	4	0	0	0	0.013065	2	5794	5794;5807		171.53	31.561	1	2623400			75049	8077	52345	52431	82470;82471	82470					0.079752247287729
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.28436279296875	2	473.2844	944.554247	-0.25264	-0.00011957	0.22887	0.00010832	-0.023766	-1.1248E-05	473.2843109988271	53.437	0.87963	53.533	53.195	54.075	0.095669					62	24	5	0	0	0	0.013924	2	5713	5702;5713		167.23	39.767	1	2701600			75050	8077	52345	52431	82472;82473	82473					0.079752247287729
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2839050292969	2	473.2844	944.554247	-0.36349	-0.00017204	0.70143	0.00033197	0.33793	0.00015994	473.28462407316596	53.571	0.45845	53.434	53.171	53.63	-0.13616					38	12	4	0	0	0	0.025498	2	5611	5611;5647		145.16	10.345	1	5434200			75051	8077	52345	52431	82474;82475	82474					0.079752247287729
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.28436279296875	2	473.2844	944.554247	-0.076454	-3.6185E-05	0.2055	9.7262E-05	0.12905	6.1077E-05	473.28436528998134	53.749	0.44961	53.504	53.237	53.687	-0.2453					38	12	4	0	0	0	0.013337	3	5650	5640;5650;5664		176.44	23.409	1	4480800			75052	8077	52345	52431	82476;82477;82478	82477					0.079752247287729
SPLTSLQH	8	Unmodified	_SPLTSLQH_					0	0	0		nc|ENSG00000164451|Q5JW98-2|CALHM4;nc|ENSG00000164451|Q5JW98-4|CALHM4;nc|ENSG00000164451|Q5JW98-3|CALHM4;ENSG00000164451|ENST00000368596|CALHM4	nc|ENSG00000164451|Q5JW98-2|CALHM4	nc|ENSG00000164451|Q5JW98-2|CALHM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7882080078125	2	441.737617	881.460681	0.51	0.00022528	1.098	0.00048503	1.608	0.00071032	441.73861552644576	43.312	0.61797	43.343	43.046	43.664	0.030823					18	16	2	0	0	0	0.027866	1	3952	3952		30.504	0	1	94543			75053	7281	52346	52432	82479	82479					0.015209253463240202
SPLTVLSPL	9	Unmodified	_SPLTVLSPL_					0	0	0			REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.73138427734375	2	463.781493	925.548434	-0.6214	-0.00028819	3.6753	0.0017045	3.0539	0.0014163	463.78310275220355	39.937	0.95166	39.824	39.5	40.452	-0.11223					33	25	2	0	0	0	0.024487	1	3509	3509		17.365	0	1	325030	+		75054	30422	52347	52433	82480	82480					0.082681262171036
SPLTVLSPL	9	Unmodified	_SPLTVLSPL_					0	0	0			REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.781493	925.548434	-0.28094	-0.00013029	2.8192	0.0013075	2.5383	0.0011772	463.7826059939504	39.94	0.37822	39.791	39.591	39.969	-0.1497	-0.085447	-0.00012146	NaN	30.504	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177540	+		75055	30422	52347	52433							0.082681262171036
SPLTVLSPL	9	Unmodified	_SPLTVLSPL_					0	0	0			REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.781493	925.548434	-0.14995	-6.9545E-05	2.0798	0.00096456	1.9298	0.00089501	463.7823687067455	40.182	0.5248	39.957	39.734	40.259	-0.225	0.080723	-0.00080734	NaN	30.504	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227740	+		75056	30422	52347	52433							0.082681262171036
SPLTVLSPL	9	Unmodified	_SPLTVLSPL_					0	0	0			REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	REV__ENST00000327857.6_2_8:6875753-6875780:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.781493	925.548434	-0.77161	-0.00035786	2.8093	0.0013029	2.0377	0.00094504	463.7826698021986	40.162	0.57626	39.932	39.697	40.273	-0.23021	0.056282	-0.00013066	NaN	30.504	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174740	+		75057	30422	52347	52433							0.082681262171036
SPLVAVVAL	9	Unmodified	_SPLVAVVAL_					0	0	0		ENST00000448867.1_1_X:102001053-102003748:+|nuORF;ENST00000483294.5_1_X:102002784-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7453308105469	2	434.778754	867.542954	-0.2422	-0.0001053	3.8686	0.001682	3.6264	0.0015767	434.78014155187145	34.754	1.4377	34.754	34.25	35.687	0					105	37	4	0	0	0	0.024132	1	2750	2750		8.2313	4.547	1	1138400			75058	14487	52348	52434	82481	82481					0.10388447425270897
SPLVAVVAL	9	Unmodified	_SPLVAVVAL_					0	0	0		ENST00000448867.1_1_X:102001053-102003748:+|nuORF;ENST00000483294.5_1_X:102002784-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	434.778754	867.542954	0.024522	1.0662E-05	3.0426	0.0013229	3.0672	0.0013335	434.77996572876486	34.752	1.1498	34.536	34.307	35.457	-0.21555	-0.048008	-0.00029299	NaN	8.2313	68	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	833940			75059	14487	52348	52434							0.10388447425270897
SPLVAVVAL	9	Unmodified	_SPLVAVVAL_					0	0	0		ENST00000448867.1_1_X:102001053-102003748:+|nuORF;ENST00000483294.5_1_X:102002784-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	434.778754	867.542954	-0.24496	-0.0001065	3.3456	0.0014546	3.1006	0.0013481	434.78008958550834	34.751	1.2644	34.544	34.326	35.59	-0.20696	-0.040121	-2.9576E-05	NaN	8.2313	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	767100			75060	14487	52348	52434							0.10388447425270897
SPLVAVVAL	9	Unmodified	_SPLVAVVAL_					0	0	0		ENST00000448867.1_1_X:102001053-102003748:+|nuORF;ENST00000483294.5_1_X:102002784-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	ENST00000448867.1_1_X:102001053-102003748:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	434.778754	867.542954	-0.075782	-3.2948E-05	3.1498	0.0013695	3.074	0.0013365	434.7799752586317	34.615	1.0981	34.44	34.252	35.35	-0.17557	-0.14456	-0.00019984	NaN	8.2313	71	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745530			75061	14487	52348	52434							0.10388447425270897
SPLVPSQL	8	Unmodified	_SPLVPSQL_					0	0	0			REV__ENSG00000236396|ENST00000588001|SLC35G4	REV__ENSG00000236396|ENST00000588001|SLC35G4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7442321777344	2	420.744911	839.475269	-0.4771	-0.00020074	-2.6344	-0.0011084	-3.1115	-0.0013091	420.7438210366682	27.588	1.4098	27.588	27.286	28.696	0					86	35	4	0	0	0	1.043	1	1508	1508		30.504	0	1	9148300	+		75062	28932	52349	52435	82482	82482					0.04910997494471303
SPLVRRTL	8	Unmodified	_SPLVRRTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.29840087890625	2	471.298176	940.581799	0.20558	9.6892E-05	-0.35618	-0.00016787	-0.15059	-7.0974E-05	471.2979407091994	32.989	0.99041	32.789	32.489	33.479	-0.20019					44	24	4	0	0	0	0.97924	1	2311	2311		40.573	4.9543	1	1517600			75063	186;187	52350	52436	82483	82483					0.10913172779669367
SPLVRRTL	8	Unmodified	_SPLVRRTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.2979736328125	2	471.298176	940.581799	-0.6965	-0.00032826	0.56798	0.00026769	-0.12852	-6.0572E-05	471.2983326658657	32.904	0.44265	32.738	32.476	32.918	-0.16565					26	10	3	0	0	0	0.71833	2	2280	2280;2293		65.803	32.288	1	1651900			75064	186;187	52350	52436	82484;82485	82484					0.10913172779669367
SPLVRRTL	8	Unmodified	_SPLVRRTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.298176	940.581799	-0.2254	-0.00010623	0.10194	4.8044E-05	-0.12347	-5.8189E-05	471.29806653432263	32.953	0.46034	32.953	32.753	33.213	0	0.15396	0.0001597	NaN	65.803	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194530			75065	186;187	52350	52436							0.10913172779669367
SPLVRRTL	8	Unmodified	_SPLVRRTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.298176	940.581799	-0.24678	-0.00011631	0.015842	7.4665E-06	-0.23094	-0.00010884	471.29800518232935	32.827	0.4177	32.833	32.625	33.043	0.0066261	0.034217	7.8546E-05	NaN	65.803	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190380			75066	186;187	52350	52436							0.10913172779669367
SPLVRRTL	8	Unmodified	_SPLVRRTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant;BIRC6|p.V926Gfs*3|1|0.15|ENSG00000115760|chr2:32416066-32416085|AGTGGAGCCTCCCAAAAAGG/-|frameshift_variant;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion;BIRC6-SPAST|3|fusion	BIRC6-SPAST|1|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.298176	940.581799	0.61785	0.00029119	-0.71712	-0.00033798	-0.099273	-4.6787E-05	471.2977042538554	32.724	0.38519	32.787	32.577	32.962	0.062885	-0.012236	-0.00061234	NaN	65.803	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193270			75067	186;187	52350	52436							0.10913172779669367
SPLVRSQLLTE	11	Unmodified	_SPLVRSQLLTE_					0	0	0			REV__nc|ENSG00000125246|Q8N0X4-2|CLYBL	REV__nc|ENSG00000125246|Q8N0X4-2|CLYBL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.9058837890625	3	414.906594	1241.69795	0.13742	5.7015E-05	-2.4086	-0.00099934	-2.2712	-0.00094233	414.90568220470885	21.158	1.9282	21.23	20.86	22.789	0.071487					101	39	5	0	0	0	1.0074	1	610	610		35.178	1.0917	1	3505200	+		75068	22803	52351	52437	82486	82486					0.08677026769032636
SPLWLFGLL	9	Unmodified	_SPLWLFGLL_					0	0	0			REV__ENST00000533540.5_1_11:122932003-122932830:-|nuORF	REV__ENST00000533540.5_1_11:122932003-122932830:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.304931640625	2	523.307678	1044.6008	-0.18836	-9.8568E-05	-4.0547	-0.0021219	-4.2431	-0.0022204	523.3054802726971	66.988	0.74348	67.012	66.728	67.471	0.023911					54	17	4	0	0	0	0.64155	1	7908	7908		50.025	0	1	4015200	+		75069	34609	52352	52438	82487	82487					0.0802870935071951
SPLWRGRVAAE	11	Unmodified	_SPLWRGRVAAE_					0	0	0			REV__ENST00000585421.5_1_17:76850910-76850997:-|nuORF	REV__ENST00000585421.5_1_17:76850910-76850997:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2608642578125	3	414.563161	1240.66765	-0.03613	-1.4978E-05	-2.4885	-0.0010316	-2.5246	-0.0010466	414.5619068804012	20.402	0.58567	20.298	20.03	20.616	-0.10477					25	10	3	0	0	0	0.024757	1	548	548		35.178	0	1	92079	+		75070	35575	52353	52439	82488	82488					0.05694712894546683
SPLYLESFST	10	Unmodified	_SPLYLESFST_					0	0	0			REV__nc|ENSG00000145293|Q9UHY7-2|ENOPH1	REV__nc|ENSG00000145293|Q9UHY7-2|ENOPH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.8372802734375	2	572.282054	1142.54956	-0.38353	-0.00021949	-0.17278	-9.8876E-05	-0.55631	-0.00031837	572.2818545903075	62.444	0.46941	62.185	61.858	62.327	-0.25824					24	11	3	0	0	0	0.03519	1	6968	6968		40.778	0	1	697900	+		75071	24396	52354	52440	82489	82489					-0.016017042046541974
SPMADRSMM	9	3 Oxidation (M)	_SPM(Oxidation (M))ADRSM(Oxidation (M))M(Oxidation (M))_		SPM(1)ADRSM(1)M(1)		SPM(55)ADRSM(55)M(55)	0	0	3		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.20654296875	2	537.206652	1072.39875	-0.054115	-2.9071E-05	-0.19391	-0.00010417	-0.24803	-0.00013324	537.2064142399702	17.704	0.47419	17.562	17.325	17.799	-0.14278					14	9	2	0	0	0	0.57016	1	190	190		54.722	21.91	1	40853			75072	6721	52355	52441	82490	82490		277;278;279			-0.1345525345095666
SPMADRSMM	9	3 Oxidation (M)	_SPM(Oxidation (M))ADRSM(Oxidation (M))M(Oxidation (M))_					0	0	3		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	537.206652	1072.39875	3.0252	0.0016252	-3.2966	-0.0017709	-0.27132	-0.00014575	537.2048119806118	17.508	0.34745	17.508	17.3	17.647	0	-0.026604	-0.0009703	NaN	54.722	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55063			75073	6721	52355	52441				277;278;279			-0.1345525345095666
SPMFESTAAD	10	Unmodified	_SPMFESTAAD_					0	0	0		ENSG00000112984|ENST00000394894|KIF20A;nc|ENSG00000112984|O95235-2|KIF20A;ENST00000503417.1_1_5:137515369-137517456:+|nuORF	ENSG00000112984|ENST00000394894|KIF20A	ENSG00000112984|ENST00000394894|KIF20A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7742309570312	2	528.221139	1054.42773	-0.91262	-0.00048207	-2.4118	-0.001274	-3.3244	-0.001756	528.219687820343	33.123	2.1479	33.13	31.539	33.687	0.0066261					96	56	3	0	0	0	0.03519	1	2181	2181		19.104	0	1	452270			75074	3254	52356	52442	82491	82491					-0.09731069558688432
SPMIPLGIL	9	Unmodified	_SPMIPLGIL_					0	0	0			REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.78192138671875	2	470.780439	939.546325	-0.65953	-0.0003105	4.4598	0.0020996	3.8002	0.0017891	470.78240677643794	44.082	0.82454	43.937	43.569	44.394	-0.14471					45	23	3	0	0	0	0.52323	1	4160	4160		57.811	8.2752	1	3790800	+		75075	30524	52357	52443	82492	82492					0.07413374207646939
SPMIPLGIL	9	Unmodified	_SPMIPLGIL_					0	0	0			REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.7820739746094	2	470.780439	939.546325	0.27941	0.00013154	3.7137	0.0017483	3.9931	0.0018799	470.7820659251429	43.982	0.84598	44.018	43.564	44.41	0.0369					45	23	3	0	0	0	0.36105	1	4105	4105		68.485	7.5128	1	3269100	+		75076	30524	52357	52443	82493	82493					0.07413374207646939
SPMIPLGIL	9	Unmodified	_SPMIPLGIL_					0	0	0			REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	470.780439	939.546325	-0.65953	-0.0003105	4.4598	0.0020996	3.8002	0.0017891	470.78240677643794	44.082	0.82454	43.937	43.569	44.394	-0.14471	-0.040794	0.00035599	NaN	68.485	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3790800	+		75077	30524	52357	52443							0.07413374207646939
SPMIPLGIL	9	Unmodified	_SPMIPLGIL_					0	0	0			REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	470.780439	939.546325	0.27941	0.00013154	3.7137	0.0017483	3.9931	0.0018799	470.7820659251429	43.982	0.84598	44.018	43.564	44.41	0.0369	0.040794	-0.00034646	NaN	68.485	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3269100	+		75078	30524	52357	52443							0.07413374207646939
SPNAIFKAL	9	Unmodified	_SPNAIFKAL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7792053222656	2	480.779285	959.544017	-0.45077	-0.00021672	-0.071604	-3.4426E-05	-0.52238	-0.00025115	480.77932189166165	60.669	1.5384	60.669	60.294	61.832	0					92	40	5	0	0	0	0.013065	5	6997	6974;6985;6997;7009;7025		195.06	74.059	1	14540000			75079	4102	52358	52444	82494;82495;82496;82497;82498	82496					0.06262661794164615
SPNAIFKAL	9	Unmodified	_SPNAIFKAL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.77899169921875	2	480.779285	959.544017	-0.45511	-0.00021881	-0.077516	-3.7268E-05	-0.53263	-0.00025608	480.77931954182844	60.876	1.6846	60.663	60.273	61.958	-0.21339					88	44	4	0	0	0	0.013065	6	6962	6962;6971;6982;6994;7006;7019		180.93	83.397	1	15364000			75080	4102	52358	52444	82499;82500;82501;82502;82503;82504	82499					0.06262661794164615
SPNAIFKAL	9	Unmodified	_SPNAIFKAL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.779052734375	2	480.779285	959.544017	-1.629	-0.00078318	1.0852	0.00052172	-0.54383	-0.00026146	480.7798990743574	60.515	1.7216	60.594	60.242	61.964	0.078888					89	45	4	0	0	0	0.013065	6	6884	6862;6873;6884;6896;6908;6922		200.16	84.698	1	14702000			75081	4102	52358	52444	82505;82506;82507;82508;82509;82510	82507					0.06262661794164615
SPNAPLTK	8	Unmodified	_SPNAPLTK_					0	0	0			REV__NIPBL-SPEF2|2|fusion	REV__NIPBL-SPEF2|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.8841247558594	2	414.23471	826.454868	-0.85574	-0.00035448	-1.4028	-0.00058108	-2.2585	-0.00093556	414.23446679801043	27.979	0.60384	27.811	27.61	28.213	-0.16816					19	14	2	0	0	0	0.027866	1	1590	1590		45.952	19.259	1	44036	+		75082	37281	52359	52445	82511	82511					0.03469826834646028
SPNEEKGDVP	10	Unmodified	_SPNEEKGDVP_					0	0	0		ENST00000534023.1_1_11:66029401-66030508:+|nuORF;ENSG00000174996|ENST00000394067|KLC2;ENST00000483152.1_1_11:66029308-66029782:+|nuORF	ENST00000534023.1_1_11:66029401-66030508:+|nuORF	ENST00000534023.1_1_11:66029401-66030508:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7730102539062	2	536.251286	1070.48802	-0.21194	-0.00011365	0.9651	0.00051754	0.75316	0.00040388	536.2520078389206	41.982	1.1386	41.982	41.396	42.534	0					48	32	2	0	0	0	0.03519	1	3752	3752		45.972	0	1	160480			75083	8520	52360	52446	82512	82512					-0.04440635903938528
SPNGHRPQL	9	Unmodified	_SPNGHRPQL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7801208496094	2	503.264865	1004.51518	-0.53402	-0.00026875	0.11375	5.7246E-05	-0.42027	-0.00021151	503.26493570351874	24.453	1.5649	24.453	23.399	24.964	0					79	35	4	0	0	0	0.023635	1	1035	1035		24.519	0	1	2191000			75084	2068	52361	52447	82513	82513					0.013099372177407531
SPNGHRPQL	9	Unmodified	_SPNGHRPQL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.2646484375	2	503.264865	1004.51518	0.23664	0.00011909	-0.36934	-0.00018587	-0.1327	-6.6782E-05	503.2645618079317	24.316	1.2687	24.394	23.736	25.005	0.078344					75	27	4	0	0	0	0.20967	2	1000	1000;1013		87.754	32.25	1	2028900			75085	2068	52361	52447	82514;82515	82514					0.013099372177407531
SPNGIEVNI	9	Unmodified	_SPNGIEVNI_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7511291503906	2	471.748182	941.481811	0.12248	5.778E-05	-0.44258	-0.00020879	-0.3201	-0.000151	471.74793845114993	45.264	1.4451	45.264	44.827	46.273	0					85	41	3	0	0	0	0.2508	1	4366	4366		82.241	2.7895	1	9057700	+		75086	26284	52362	52448	82516	82516					0.008728906551823457
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2;ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF	nc|ENSG00000182054|P48735-2|IDH2;ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENST00000462386.5_1_2:209112975-209118617:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	542.80908203125	2	542.809105	1083.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.279	1	52.132	51.632	52.632	-0.14735								0	0	0	0.24261	1	5571	5571		81.525	23.714	1				75087	9096;14706	52363	52449	82517	82517					0.06519932737569434
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2;ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF	nc|ENSG00000182054|P48735-2|IDH2;ENST00000462386.5_1_2:209112975-209118617:-|nuORF	ENST00000462386.5_1_2:209112975-209118617:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	542.8085327148438	2	542.809105	1083.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.121	1	52.213	51.713	52.713	0.091938								0	0	0	0.51884	1	5498	5498		66.962	25.535	1				75088	9096;14706	52363	52449	82518	82518					0.06519932737569434
SPNIHKLTV	9	Unmodified	_SPNIHKLTV_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3237609863281	2	504.795466	1007.57638	-0.087688	-4.4265E-05	-0.26415	-0.00013334	-0.35184	-0.00017761	505.2976750822985	79	0.25255	78.849	78.65	78.903	-0.15051					6	5	2	0	0	0	0.024427	1	9426	9426		19.997	0	1	56659	+		75089	26799	52364	52450	82519	82519					0.07289449197173781
SPNKLYTL	8	Unmodified	_SPNKLYTL_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2627868652344	2	468.263468	934.512382	0.083697	3.9192E-05	0.02745	1.2854E-05	0.11115	5.2046E-05	468.26333596055434	47.031	0.98323	47.031	46.412	47.395	0					49	26	3	0	0	0	0.050517	1	4691	4691		181.81	33.6	1	2104400			75090	1446	52365	52451	82520	82520					0.04250669040231969
SPNKLYTL	8	Unmodified	_SPNKLYTL_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.2635192871094	2	468.263468	934.512382	0.65085	0.00030477	-0.66019	-0.00030914	-0.0093428	-4.3749E-06	468.26301307937007	47.152	0.67269	46.999	46.698	47.371	-0.15301					42	17	3	0	0	0	0.2677	1	4690	4690		125.81	10.355	1	2029100			75091	1446	52365	52451	82521	82521					0.04250669040231969
SPNKLYTL	8	Unmodified	_SPNKLYTL_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.262939453125	2	468.263468	934.512382	0.16471	7.7127E-05	-0.15407	-7.2147E-05	0.010634	4.9795E-06	468.2632573255595	46.991	0.62509	47.05	46.729	47.354	0.059097					41	16	3	0	0	0	0.15467	1	4634	4634		148.04	23.449	1	2259500			75092	1446	52365	52451	82522	82522					0.04250669040231969
SPNNRIAL	8	Unmodified	_SPNNRIAL_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2589416503906	2	442.751059	883.487565	-0.49015	-0.00021701	1.4776	0.00065422	0.98749	0.00043721	442.75144716342817	27.64	0.49306	27.64	27.544	28.037	0					21	12	2	0	0	0	0.027866	1	1530	1530		35.201	0	1	270480			75093	5538	52366	52452	82523	82523					0.0411603395750717
SPNPKANSI	9	Unmodified	_SPNPKANSI_					0	0	0		ENST00000489288.6_1_12:2986423-2994675:+|nuORF;ENST00000461997.5_1_12:2986378-2997084:+|nuORF;ENST00000538636.5_3_12:2986404-2994675:+|nuORF	ENST00000489288.6_1_12:2986423-2994675:+|nuORF	ENST00000489288.6_1_12:2986423-2994675:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2503662109375	2	464.248349	926.482145	-0.57574	-0.00026729	4.2785	0.0019863	3.7028	0.001719	464.2503925053204	47.929	1.9482	47.929	47.56	49.508	0					193	56	6	0	0	0	0.32064	1	4820	4820		72.879	6.45	1	137570000			75094	14695	52367	52453	82524	82524					0.01596310375032317
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.8014526367188	2	563.801811	1125.58907	-0.75502	-0.00042568	-0.044545	-2.5114E-05	-0.79956	-0.0004508	563.801820756376	32.204	0.73654	32.204	31.869	32.606	0					44	18	3	0	0	0	0.036205	3	2226	2203;2214;2226		125.71	52.834	1	6545800			75095	893	52368	52454	82525;82526;82527	82527					0.03129860589410782
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.8016967773438	2	563.801811	1125.58907	-0.67672	-0.00038154	-0.017966	-1.0129E-05	-0.69469	-0.00039167	563.801884892804	32.071	1.0729	32.083	31.782	32.855	0.011799					44	27	2	0	0	0	0.0098899	4	2186	2165;2174;2186;2200		140.11	60.4	1	6561800			75096	893	52368	52454	82528;82529;82530;82531	82530					0.03129860589410782
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.8017578125	2	563.801811	1125.58907	-0.85052	-0.00047953	0.159	8.9645E-05	-0.69152	-0.00038988	563.8019467730558	31.837	0.79009	31.906	31.606	32.396	0.068962					46	19	3	0	0	0	0.012363	3	2100	2100;2111;2122		136.99	46.388	1	6468200			75097	893	52368	52454	82532;82533;82534	82532					0.03129860589410782
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	563.801811	1125.58907	0.033911	1.9119E-05	-5.2909	-0.002983	-5.257	-0.0029639	563.7987399249073	31.972	0.25587	31.736	31.611	31.867	-0.23667	-0.24664	-0.0059697	NaN	140.11	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25572			75098	893	52368	52454							0.03129860589410782
SPNQSLRLGL	10	Unmodified	_SPNQSLRLGL_					0	0	0		nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8085327148438	2	542.809105	1083.60366	-0.057014	-3.0948E-05	-0.36032	-0.00019558	-0.41733	-0.00022653	542.8088466672749	55.176	0.74068	55.176	54.869	55.61	0					48	20	3	0	0	0	0.18296	1	6100	6100		123.21	55.714	1	4718400			75099	3096	52369	52455	82535	82535					0.06519932737569434
SPNQSLRLGL	10	Unmodified	_SPNQSLRLGL_					0	0	0		nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.809105	1083.60366	-0.74913	-0.00040664	0.49913	0.00027093	-0.25001	-0.00013571	542.8092313694972	55.275	0.81369	55.125	54.82	55.634	-0.15036	0.0010121	0.00012282	NaN	123.21	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4705400			75100	3096	52369	52455							0.06519932737569434
SPNQSLRLGL	10	Unmodified	_SPNQSLRLGL_					0	0	0		nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	nc|ENSG00000111247|Q96B01-3|RAD51AP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.809105	1083.60366	-1.2962	-0.00070359	0.91617	0.0004973	-0.38003	-0.00020628	542.8095351724407	54.972	0.67583	55.07	54.733	55.409	0.098015	-0.053388	0.00057557	NaN	123.21	47	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4685100			75101	3096	52369	52455							0.06519932737569434
SPNRSTNTL	9	Unmodified	_SPNRSTNTL_					0	0	0		ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2539978027344	2	495.254163	988.493772	-0.14822	-7.3408E-05	-0.27322	-0.00013531	-0.42144	-0.00020872	495.2539646623999	24.243	0.74636	24.243	23.951	24.697	0					37	16	3	0	0	0	0.053401	1	1034	1034		127.46	36.685	1	938000			75102	7419	52370	52456	82536	82536					-0.0009349260160433914
SPNRSTNTL	9	Unmodified	_SPNRSTNTL_					0	0	0		ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.25384521484375	2	495.254163	988.493772	-1.0134	-0.00050188	0.66518	0.00032943	-0.3482	-0.00017245	495.2543920228136	24.248	0.71182	24.201	23.957	24.669	-0.047148					35	15	3	0	0	0	0.025498	1	1030	1030		145.16	62.851	1	994020			75103	7419	52370	52456	82537	82537					-0.0009349260160433914
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2624206542969	2	480.261456	958.50836	-0.73999	-0.00035539	2.908	0.0013966	2.168	0.0010412	480.2627200331786	29.129	0.87389	29.129	28.778	29.652	0					60	21	4	0	0	0	0.013065	3	1757	1746;1757;1770		171.53	51.975	1	5856800			75104	1780	52371	52457	82538;82539;82540	82539					0.027445795465382616
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.262939453125	2	480.261456	958.50836	-0.37698	-0.00018105	2.4742	0.0011882	2.0972	0.0010072	480.26242078091866	29.103	1.0853	29.106	28.506	29.591	0.0031376					88	26	6	0	0	0	0.013065	3	1741	1729;1741;1754		171.53	49.356	1	5995400			75105	1780	52371	52457	82541;82542;82543	82542					0.027445795465382616
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.26361083984375	2	480.261456	958.50836	-0.053943	-2.5907E-05	1.8438	0.00088549	1.7898	0.00085958	480.26223512519636	28.806	0.83738	28.887	28.533	29.371	0.080811					59	20	4	0	0	0	0.014454	4	1667	1644;1655;1667;1681		185.55	50.739	1	5474400			75106	1780	52371	52457	82544;82545;82546;82547	82546					0.027445795465382616
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.261456	958.50836	-0.68823	-0.00033053	-0.19232	-9.2364E-05	-0.88054	-0.00042289	480.2615932637683	29.297	0.43288	29.052	28.753	29.185	-0.24524	0.021768	-0.0014059	NaN	171.53	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114090			75107	1780	52371	52457							0.027445795465382616
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.261456	958.50836	-0.12261	-5.8884E-05	0.17075	8.2007E-05	0.048145	2.3122E-05	480.2613593276751	29.128	0.76739	28.978	28.487	29.254	-0.14952	-0.05246	-0.0010571	NaN	171.53	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107630			75108	1780	52371	52457							0.027445795465382616
SPNTDREVL	9	Unmodified	_SPNTDREVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.7615966796875	2	515.76182	1029.50909	-0.92865	-0.00047896	1.1822	0.00060972	0.25353	0.00013076	515.7623017180931	35.283	0.58952	35.283	35.018	35.608	0					42	15	3	0	0	0	0.22902	1	2708	2708		85.161	2.8558	1	2672600			75109	1089	52372	52458	82548	82548					-0.004486258044153146
SPNTDREVL	9	Unmodified	_SPNTDREVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7614135742188	2	515.76182	1029.50909	-0.94454	-0.00048716	1.2177	0.00062804	0.27316	0.00014088	515.7623345354272	35.084	0.7029	35.128	34.832	35.535	0.044056					41	17	3	0	0	0	0.077175	2	2618	2618;2630		118.74	27.966	1	2556800			75110	1089	52372	52458	82549;82550	82549					-0.004486258044153146
SPNTDREVL	9	Unmodified	_SPNTDREVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.76182	1029.50909	-0.47861	-0.00024685	-0.79387	-0.00040945	-1.2725	-0.0006563	515.7628823238875	35.441	0.11973	35.254	35.18	35.3	-0.18675	0.062343	-0.0018632	NaN	118.74	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38447			75111	1089	52372	52458							-0.004486258044153146
SPNVRPSF	8	Unmodified	_SPNVRPSF_					0	0	0		nc|ENSG00000095203|Q9H329-2|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	nc|ENSG00000095203|Q9H329-2|EPB41L4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2539367675781	2	452.237784	902.461016	-0.7826	-0.00035392	-0.98897	-0.00044725	-1.7716	-0.00080117	452.23725464169723	20.539	0.33477	20.539	20.274	20.609	0					12	6	3	0	0	0	0.027866	1	557	557		24.203	0	1	54067			75112	18115	52373	52459	82551	82551					0.005883450661940515
SPNYMELSD	9	Unmodified	_SPNYMELSD_					0	0	0			REV__ENSG00000175115|ENST00000320580|PACS1	REV__ENSG00000175115|ENST00000320580|PACS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3054809570312	2	528.221139	1054.42773	0.23358	0.00012338	-3.7957	-0.0020049	-3.5621	-0.0018816	528.219066571495	33.113	2.4565	33.169	31.354	33.81	0.056572					118	63	2	0	0	0	0.024319	1	2096	2096		47.657	0	1	432840	+		75113	26918	52374	52460	82552	82552					-0.09731069558688432
SPPDKEARFY	10	Unmodified	_SPPDKEARFY_					0	0	0			REV__nc|ENSG00000080224|Q9UF33|EPHA6	REV__nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	604.7535400390625	2	605.29857	1208.58259	-0.61991	-0.00037523	-2.287	-0.0013843	-2.907	-0.0017596	605.2971648507025	63.03	0.98333	62.809	62.609	63.592	-0.22097					47	24	2	0	0	0	0.03519	1	7082	7082		35.152	0	1	339610	+		75114	20650	52375	52461	82553	82553					-0.01336077361952448
SPPEYSYF	8	Unmodified	_SPPEYSYF_					0	0	0			REV__nc|ENSG00000071994|Q16342-4|PDCD2	REV__nc|ENSG00000071994|Q16342-4|PDCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7657775878906	2	495.216183	988.417813	-1.3679	-0.00067742	1.6998	0.00084176	0.33185	0.00016434	495.21691402453575	40.639	0.72641	40.409	40.083	40.809	-0.2303					32	19	2	0	0	0	0.027866	1	3571	3571		13.775	0	1	397640	+		75115	20458	52376	52462	82554	82554					-0.07685889501760812
SPPFLFVE	8	Unmodified	_SPPFLFVE_					0	0	0			REV__ENST00000446877.5_2_2:190650090-190656621:+|nuORF	REV__ENST00000446877.5_2_2:190650090-190656621:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.7664794921875	2	468.247286	934.48002	-0.62591	-0.00029308	0.54289	0.00025421	-0.083023	-3.8875E-05	468.24704251076867	35.043	0.95523	35.022	34.634	35.589	-0.021767					45	24	3	0	0	0	0.027866	1	2643	2643		18.324	0	1	285940	+		75116	32636	52377	52463	82555	82555					0.010158816372495494
SPPFTVILV	9	Unmodified	_SPPFTVILV_					0	0	0		ENST00000560334.5_1_15:79271198-79356973:-|nuORF;ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1;RASGRF1|p.N914Tfs*15|1|0.14|ENSG00000058335|chr15:78999798-78999798|G/-|frameshift_variant	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7690124511719	2	486.791861	971.569169	0.015051	7.3268E-06	-2.7285	-0.0013282	-2.7135	-0.0013209	486.79018448570633	67.698	0.50153	67.465	67.175	67.676	-0.23376					21	11	3	0	0	0	0.024517	1	7813	7813		12.959	0.75233	1	169660			75117	1214	52378	52464	82556	82556					0.08224716596748749
SPPGLLVLGG	10	Unmodified	_SPPGLLVLGG_					0	0	0		ENST00000349213.7_1_1:235490233-235491210:-|nuORF	ENST00000349213.7_1_1:235490233-235491210:-|nuORF	ENST00000349213.7_1_1:235490233-235491210:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.2740173339844	2	455.273835	908.533118	1.0712	0.00048769	-1.0532	-0.00047948	0.01803	8.2087E-06	455.27321840786016	97.556	0.79317	97.554	97.101	97.894	-0.0020752					30	17	2	0	0	0	0.75995	1	12379	12379		63.306	19.189	1	218040			75118	12587	52379	52465	82557	82557					0.07519259419893842
SPPHRCCLH	9	Unmodified	_SPPHRCCLH_					0	0	0			REV__nc|ENSG00000143369|Q16610-2|ECM1	REV__nc|ENSG00000143369|Q16610-2|ECM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2680053710938	2	525.242021	1048.46949	0.45212	0.00023747	-2.3009	-0.0012085	-1.8488	-0.00097105	525.2406053158182	43.012	0.65402	43.043	42.759	43.413	0.030827					25	17	2	0	0	0	0.024381	1	3973	3973		45.952	10.334	1	184030	+		75119	24235	52380	52466	82558	82558					-0.052807475604822685
SPPHSKAAPG	10	Unmodified	_SPPHSKAAPG_					0	0	0		ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7693786621094	2	474.748516	947.482479	0.49781	0.00023633	3.0693	0.0014572	3.5671	0.0016935	474.7497093953005	22.406	0.88119	22.406	22.106	22.987	0					39	18	3	0	0	0	0.03519	1	791	791		10.265	0	1	137600			75120	3240	52381	52467	82559	82559					0.0066373009490234836
SPPIAGLKT	9	Unmodified	_SPPIAGLKT_					0	0	0		ENST00000263367.7_2_19:41787091-41787166:+|nuORF	ENST00000263367.7_2_19:41787091-41787166:+|nuORF	ENST00000263367.7_2_19:41787091-41787166:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.756103515625	2	442.26601	882.517468	-0.20049	-8.867E-05	1.1373	0.00050298	0.93678	0.00041431	442.2664784943652	45.418	0.67077	45.418	45.114	45.784	0					25	19	2	0	0	0	0.024397	1	4367	4367		24.519	5.1592	1	388200			75121	11528	52382	52468	82560	82560					0.07150972902854846
SPPKPLRA	8	Unmodified	_SPPKPLRA_					0	0	0		nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2537841796875	2	433.266345	864.518136	-0.37344	-0.0001618	0.94939	0.00041134	0.57595	0.00024954	433.2666193095401	28.556	0.50274	28.551	28.286	28.789	-0.0042019					18	11	2	0	0	0	0.027866	1	1685	1685		23.042	0	1	57835			75122	18797	52383	52469	82561	82561					0.08045812342561476
SPPLKVLAEQL	11	Unmodified	_SPPLKVLAEQL_					0	0	0		ENSG00000175643|ENST00000312499|RMI2	ENSG00000175643|ENST00000312499|RMI2	ENSG00000175643|ENST00000312499|RMI2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.85595703125	2	597.858264	1193.70197	0.028254	1.6892E-05	-2.7647	-0.0016529	-2.7364	-0.001636	598.3585788626698	90.988	1.6784	90.848	90.115	91.794	-0.13942					112	39	3	0	0	0	0.99553	1	11235	11235		37.812	4.9991	1	2547700			75123	8579	52384	52470	82562	82562					0.11287116262769814
SPPLNDPFSD	10	Unmodified	_SPPLNDPFSD_					0	0	0			REV__nc|ENSG00000143951|O95876-3|WDPCP	REV__nc|ENSG00000143951|O95876-3|WDPCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2753295898438	2	544.748379	1087.4822	-0.95214	-0.00051868	1.4391	0.00078394	0.48695	0.00026526	545.2508210963098	77.549	0.50121	77.562	77.317	77.819	0.013496					19	11	2	0	0	0	0.03519	1	9514	9514		41.427	14.734	1	293870	+		75124	24300	52385	52471	82563	82563					-0.05803734415599138
SPPLPEPSL	9	Unmodified	_SPPLPEPSL_					0	0	0			REV__ENSG00000178531|ENST00000318978|CTXN1	REV__ENSG00000178531|ENST00000318978|CTXN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.7556457519531	2	468.755475	935.496398	0.11329	5.3107E-05	0.59658	0.00027965	0.70988	0.00033276	468.75562813213844	94.296	1.214	94.302	93.971	95.185	0.0059814					78	28	4	0	0	0	0.59099	1	11941	11941		53.351	2.016	1	2570500	+		75125	27190	52386	52472	82564	82564					0.026069628033383196
SPPLPPPPFT	10	Unmodified	_SPPLPPPPFT_					0	0	0		ENST00000360299.9_1_12:56367870-56380734:+|nuORF	ENST00000360299.9_1_12:56367870-56380734:+|nuORF	ENST00000360299.9_1_12:56367870-56380734:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2359619140625	2	525.286943	1048.55933	-0.81723	-0.00042928	1.9835	0.0010419	1.1663	0.00061264	525.7872107184618	25.743	0.4129	25.517	25.19	25.602	-0.22683					11	9	2	0	0	0	0.03519	1	1241	1241		49.442	10.42	1	47309			75126	12761	52387	52473	82565	82565					0.03699528591369017
SPPLPYLLR	9	Unmodified	_SPPLPYLLR_					0	0	0			REV__ENSG00000183793|ENST00000360151|NPIPA5	REV__ENSG00000183793|ENST00000360151|NPIPA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3132934570312	2	528.316035	1054.61752	-0.80733	-0.00042653	-2.2607	-0.0011944	-3.068	-0.0016209	528.3148148521342	97.258	1.3155	97.258	96.748	98.063	0					61	29	3	0	0	0	0.92825	1	12426	12426		30.504	0	1	290290	+		75127	27611	52388	52474	82566	82566					0.09239210236660256
SPPLRETF	8	Unmodified	_SPPLRETF_					0	0	0			REV__ENST00000551692.5_1_14:105834472-105850026:+|nuORF	REV__ENST00000551692.5_1_14:105834472-105850026:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7788391113281	2	473.753267	945.491981	0.60769	0.0002879	2.1999	0.0010422	2.8076	0.0013301	473.7530704106	24.519	0.41363	24.597	24.455	24.869	0.078344					10	8	2	0	0	0	0.027866	1	1024	1024		18.324	0	1	12445	+		75128	27260	52389	52475	82567	82567					0.017054983804200674
SPPLWRMWPE	10	Unmodified	_SPPLWRMWPE_					0	0	0			REV__ENST00000523104.5_1_8:30414263-30416463:+|nuORF	REV__ENST00000523104.5_1_8:30414263-30416463:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.2736511230469	3	433.549864	1297.62776	0.93758	0.00040649	-3.6055	-0.0015632	-2.6679	-0.0011567	433.5482000774493	54.995	0.50842	54.789	54.468	54.976	-0.20613					29	13	3	0	0	0	0.03519	1	5829	5829		53.089	9.6704	1	179040	+		75129	34349	52390	52476	82568	82568					-0.009145501004240941
SPPPLGRLPT	10	Unmodified	_SPPPLGRLPT_					0	0	0			REV__ENST00000416792.1_3_19:55944525-55949973:-|nuORF	REV__ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7811279296875	2	517.803291	1033.59203	-1.379	-0.00071406	-1.1361	-0.00058828	-2.5151	-0.0013023	517.8023110754621	44.306	0.36214	44.306	44.089	44.451	0					22	10	3	0	0	0	0.03519	1	4232	4232		35.152	10.633	1	251410	+		75130	27990	52391	52477	82569	82569					0.07657735714224145
SPPPPGPTA	9	Unmodified	_SPPPPGPTA_					0	0	0		ENSG00000112941|ENST00000230859|TENT4A	ENSG00000112941|ENST00000230859|TENT4A	ENSG00000112941|ENST00000230859|TENT4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	410.7139587402344	2	410.713611	819.412668	-0.299	-0.0001228	0.69246	0.0002844	0.39346	0.0001616	410.7137313376792	28.055	1.3851	27.903	27.569	28.954	-0.15195					64	33	4	0	0	0	0.50848	1	1566	1566		58.782	0.97068	1	6087300			75131	3251	52392	52478	82570	82570					-0.004261485737174553
SPPPSVGWR	9	Unmodified	_SPPPSVGWR_					0	0	0			REV__SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|11|1|sense	REV__SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|11|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.7565002441406	2	491.758884	981.503215	-0.12208	-6.0032E-05	-4.0382	-0.0019858	-4.1603	-0.0020459	491.75671061808134	23.764	0.80759	23.584	23.356	24.164	-0.17989					45	18	4	0	0	0	0.62163	2	969	969;985		51.335	7.0454	1	1326000	+		75132	37648	52393	52479	82571;82572	82571					0.011723204745749172
SPPRFKQF	8	Unmodified	_SPPRFKQF_					0	0	0		ENSG00000230453|ENST00000684830|ANKRD18B	ENSG00000230453|ENST00000684830|ANKRD18B	ENSG00000230453|ENST00000684830|ANKRD18B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.77862548828125	2	503.777077	1005.5396	-0.54807	-0.00027611	3.463	0.0017446	2.9149	0.0014685	503.7786342981133	24.082	2.4579	24.082	23.321	25.779	0					127	57	3	0	0	0	0.96719	1	987	987		42.474	0	1	878790			75133	10689	52394	52480	82573	82573					0.037051973712891595
SPPSPITIGK	10	Unmodified	_SPPSPITIGK_					0	0	0			REV__ENST00000342983.6_1_X:131351363-131351708:-|nuORF	REV__ENST00000342983.6_1_X:131351363-131351708:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7886047363281	2	498.78985	995.565146	-0.28134	-0.00014033	-3.1093	-0.0015509	-3.3906	-0.0016912	498.7883463263969	21.483	1.0123	21.554	21.254	22.266	0.071489					58	20	4	0	0	0	1.0816	1	611	611		35.152	2.3396	1	2483100	+		75134	30653	52395	52481	82574	82574					0.06718627103043673
SPPTLVRLRKL	11	Unmodified	_SPPTLVRLRKL_					0	0	0		nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4;ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-2|HPS4	nc|ENSG00000100099|Q9NQG7-3|HPS4	nc|ENSG00000100099|Q9NQG7-3|HPS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.2643737792969	3	427.278473	1278.81359	-0.67523	-0.00028851	1.8034	0.00077057	1.1282	0.00048206	427.2807733481413	53.813	0.37133	53.677	53.319	53.691	-0.13617					12	10	2	0	0	0	0.024828	1	5664	5664		13.508	0	1	190830			75135	2133	52396	52482	82575	82575					0.18533595410531234
SPPTPIRSVL	10	Unmodified	_SPPTPIRSVL_					0	0	0		nc|ENSG00000134222|Q6PGN9-4|PSRC1;ENST00000492431.1_1_1:109822777-109824720:-|nuORF;ENSG00000134222|ENST00000369909|PSRC1	nc|ENSG00000134222|Q6PGN9-4|PSRC1	nc|ENSG00000134222|Q6PGN9-4|PSRC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8142700195312	2	533.816399	1065.61824	-1.076	-0.00057436	0.31359	0.0001674	-0.76237	-0.00040696	533.8164178572383	54.445	0.9042	54.445	54.179	55.083	0					65	25	4	0	0	0	0.52143	1	5969	5969		85.862	41.485	1	4931400			75136	4766	52397	52483	82576	82576					0.08806004885695984
SPPTPIRSVL	10	Unmodified	_SPPTPIRSVL_					0	0	0		nc|ENSG00000134222|Q6PGN9-4|PSRC1;ENST00000492431.1_1_1:109822777-109824720:-|nuORF;ENSG00000134222|ENST00000369909|PSRC1	nc|ENSG00000134222|Q6PGN9-4|PSRC1	nc|ENSG00000134222|Q6PGN9-4|PSRC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8123168945312	2	533.816399	1065.61824	-0.4317	-0.00023045	0.14383	7.678E-05	-0.28787	-0.00015367	533.8162624823533	54.544	0.88	54.394	54.12	55	-0.15036					65	24	4	0	0	0	0.58878	1	5951	5951		78.264	35.4	1	4964200			75137	4766	52397	52483	82577	82577					0.08806004885695984
SPPTPIRSVL	10	Unmodified	_SPPTPIRSVL_					0	0	0		nc|ENSG00000134222|Q6PGN9-4|PSRC1;ENST00000492431.1_1_1:109822777-109824720:-|nuORF;ENSG00000134222|ENST00000369909|PSRC1	nc|ENSG00000134222|Q6PGN9-4|PSRC1	nc|ENSG00000134222|Q6PGN9-4|PSRC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8131103515625	2	533.816399	1065.61824	0.30039	0.00016035	-0.79241	-0.000423	-0.49203	-0.00026265	533.8157888762388	54.292	0.83982	54.39	54.041	54.881	0.098015					67	23	4	0	0	0	0.6365	2	5850	5850;5862		72.879	28.502	1	4870200			75138	4766	52397	52483	82578;82579	82578					0.08806004885695984
SPPTRPRND	9	Unmodified	_SPPTRPRND_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3164672851562	2	520.267604	1038.52066	-0.46773	-0.00024334	0.8625	0.00044873	0.39477	0.00020539	520.7677722337893	31.711	0.51904	31.722	31.465	31.984	0.011797					17	12	2	0	0	0	0.024506	1	2133	2133		30.504	8.5438	1	50717			75139	3585	52398	52484	82580	82580					0.002936160095487139
SPPVGASWTA	10	Unmodified	_SPPVGASWTA_					0	0	0			REV__nc|ENSG00000065609|O60641-3|SNAP91	REV__nc|ENSG00000065609|O60641-3|SNAP91	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7768859863281	2	486.742899	971.471246	-1.3591	-0.00066152	-2.1578	-0.0010503	-3.5169	-0.0017118	486.7417856650645	29.315	0.86635	29.315	28.947	29.814	0					54	21	3	0	0	0	0.03519	1	1847	1847		14.865	0	1	4056400	+		75140	20316	52399	52485	82581	82581					-0.015630919992418058
SPPVTFAFQVK	11	Unmodified	_SPPVTFAFQVK_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.58746337890625	3	407.560646	1219.66011	0.33116	0.00013497	-4.334	-0.0017664	-4.0028	-0.0016314	407.5588168508035	25.417	0.4162	25.247	24.955	25.371	-0.17078					15	9	2	0	0	0	0.024747	1	1210	1210		39.873	13.81	1	54770			75141	15010	52400	52486	82582	82582					0.05906560574226205
SPQANRTYV	9	Unmodified	_SPQANRTYV_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE;ENST00000477200.1_1_2:209163383-209167125:+|nuORF;nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-3|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.263916015625	2	518.26453	1034.51451	-1.5384	-0.00079731	1.1737	0.0006083	-0.3647	-0.00018901	518.2650894041993	30.334	1.0241	30.334	29.814	30.838	0					46	16	5	0	0	0	0.46427	1	1935	1935		61.691	10.499	1	1718700			75142	3403	52401	52487	82583	82583					-0.0013690222197055846
SPQANRTYV	9	Unmodified	_SPQANRTYV_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE;ENST00000477200.1_1_2:209163383-209167125:+|nuORF;nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-3|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2642211914062	2	518.26453	1034.51451	-0.65686	-0.00034043	0.6125	0.00031744	-0.044357	-2.2989E-05	518.2647203560568	30.271	0.78449	30.28	29.962	30.746	0.0086708					44	18	4	0	0	0	0.33603	2	1913	1913;1925		70.816	12.311	1	1591400			75143	3403	52401	52487	82584;82585	82584					-0.0013690222197055846
SPQANRTYV	9	Unmodified	_SPQANRTYV_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE;ENST00000477200.1_1_2:209163383-209167125:+|nuORF;nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-3|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2640991210938	2	518.26453	1034.51451	-1.5096	-0.00078236	1.3723	0.00071124	-0.13722	-7.1117E-05	518.2651674571407	29.909	0.82379	29.987	29.724	30.548	0.078344					44	19	3	0	0	0	0.33603	2	1832	1832;1844		70.816	24.864	1	1810900			75144	3403	52401	52487	82586;82587	82586					-0.0013690222197055846
SPQAQASPL	9	Unmodified	_SPQAQASPL_					0	0	0		ENST00000504435.1_1_4:887824-888280:-|nuORF	ENST00000504435.1_1_4:887824-888280:-|nuORF	ENST00000504435.1_1_4:887824-888280:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.2850036621094	2	449.735074	897.455596	-0.37427	-0.00016832	4.0341	0.0018143	3.6598	0.001646	449.73611169268855	35.097	0.32627	35.097	34.944	35.27	0					12	8	3	0	0	0	0.024209	1	2652	2652		47.657	1.6851	1	49035			75145	15713	52402	52488	82588	82588					0.0027662148370382056
SPQDKRTLL	9	Unmodified	_SPQDKRTLL_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3042602539062	2	529.303655	1056.59276	-1.1358	-0.00060119	0.84366	0.00044655	-0.29216	-0.00015464	529.3039889958783	31.624	0.80547	31.624	31.343	32.149	0					47	19	4	0	0	0	0.30449	1	2133	2133		75.043	0.78827	1	1623500			75146	3885	52403	52489	82589	82589					0.06672530363289297
SPQDKRTLL	9	Unmodified	_SPQDKRTLL_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.3038330078125	2	529.303655	1056.59276	-0.57975	-0.00030686	0.19557	0.00010352	-0.38418	-0.00020335	529.3036549690316	31.552	0.7241	31.564	31.299	32.023	0.011797					47	17	4	0	0	0	0.29609	1	2111	2111		76.17	17.388	1	1924200			75147	3885	52403	52489	82590	82590					0.06672530363289297
SPQDKRTLL	9	Unmodified	_SPQDKRTLL_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3035278320312	2	529.303655	1056.59276	-0.33517	-0.00017741	0.091207	4.8276E-05	-0.24397	-0.00012913	529.3035779402041	31.317	0.72628	31.386	31.04	31.766	0.068962					52	17	5	0	0	0	0.16539	1	2029	2029		96.034	2.0272	1	1747400			75148	3885	52403	52489	82591	82591					0.06672530363289297
SPQEARNML	9	Oxidation (M)	_SPQEARNM(Oxidation (M))L_		SPQEARNM(1)L		SPQEARNM(65)L	0	0	1		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.255615234375	2	531.255848	1060.49714	-1.6679	-0.00088609	1.8037	0.00095824	0.13581	7.2151E-05	531.2566310991916	28.999	1.0382	28.999	28.49	29.528	0					58	25	3	0	0	0	0.40693	1	1719	1719		65.465	14.13	1	1361900			75149	2350	52404	52490	82592	82592		92			-0.030685658192624032
SPQEARNML	9	Oxidation (M)	_SPQEARNM(Oxidation (M))L_		SPQEARNM(1)L		SPQEARNM(96)L	0	0	1		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.2556762695312	2	531.255848	1060.49714	-0.88541	-0.00047038	0.88415	0.00046971	-0.0012548	-6.666E-07	531.2561552189981	28.946	1.0447	28.949	28.506	29.551	0.0031357					60	25	3	0	0	0	0.16638	2	1695	1695;1721		95.815	32.773	1	1468500			75150	2350	52404	52490	82593;82594	82593		92			-0.030685658192624032
SPQEARNML	9	Oxidation (M)	_SPQEARNM(Oxidation (M))L_		SPQEARNM(1)L		SPQEARNM(64)L	0	0	1		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.255615234375	2	531.255848	1060.49714	-0.28407	-0.00015091	0.21717	0.00011537	-0.066894	-3.5538E-05	531.2555789468593	28.37	1.079	28.451	28.208	29.287	0.080812					63	26	4	0	0	0	0.42604	1	1626	1626		64.207	9.431	1	1277400			75151	2350	52404	52490	82595	82595		92			-0.030685658192624032
SPQEARNML	9	Unmodified	_SPQEARNML_					0	0	0		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2606201171875	2	523.258391	1044.50223	-1.9554	-0.0010232	0.95827	0.00050142	-0.99718	-0.00052178	523.2588549332969	37.997	0.56648	37.997	37.632	38.199	0					28	16	2	0	0	0	0.40693	1	3157	3157		65.465	8.7443	1	3503200			75152	2350	52404	52491	82596	82596					-0.01824261956630835
SPQEARNML	9	Unmodified	_SPQEARNML_					0	0	0		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.263671875	2	523.258391	1044.50223	-1.3329	-0.00069743	0.60566	0.00031692	-0.72719	-0.00038051	523.2586549451963	37.887	0.64614	37.805	37.503	38.149	-0.082512					43	18	3	0	0	0	0.34489	1	3125	3125		69.628	0.8408	1	3656100			75153	2350	52404	52491	82597	82597					-0.01824261956630835
SPQEARNML	9	Unmodified	_SPQEARNML_					0	0	0		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2628173828125	2	523.258391	1044.50223	-1.4728	-0.00077063	0.34647	0.00018129	-1.1263	-0.00058934	523.2585697265253	38.082	0.67976	38.11	37.782	38.462	0.027275					36	19	2	0	0	0	0.34489	1	3113	3113		69.628	9.3337	1	3323000			75154	2350	52404	52491	82598	82598					-0.01824261956630835
SPQFKEGSR	9	Unmodified	_SPQFKEGSR_					0	0	0			REV__ENSG00000136999|ENST00000259526|CCN3	REV__ENSG00000136999|ENST00000259526|CCN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.26416015625	2	518.26453	1034.51451	-1.5384	-0.00079731	1.1737	0.0006083	-0.3647	-0.00018901	518.2650894041993	30.334	1.0241	30.334	29.814	30.838	0					46	16	5	0	0	0	0.48817	1	1946	1946		60.118	1.872	1	1718700	+		75155	23717	52405	52492	82599	82599					-0.001369022219478211
SPQFNSYI	8	Unmodified	_SPQFNSYI_					0	0	0			REV__ENSG00000169876|ENST00000306151|MUC17	REV__ENSG00000169876|ENST00000306151|MUC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.28466796875	2	478.229625	954.444697	3.562	0.0017034	3.4606	0.001655	7.0226	0.0033584	478.2311395563394	18.241	0.44914	17.999	17.825	18.274	-0.24256					12	8	2	0	0	0	0.027866	1	270	270		19.36	0	1	54033	+		75156	26408	52406	52493	82600	82600					-0.03434780890563616
SPQFSQAVPN	10	Unmodified	_SPQFSQAVPN_					0	0	0		ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	ENSG00000161021|ENST00000292599|MAML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3164672851562	2	537.764363	1073.51417	-0.52489	-0.00028227	-0.23684	-0.00012736	-0.76172	-0.00040963	537.7642914227539	40.633	0.43331	40.408	40.222	40.655	-0.225					29	11	4	0	0	0	0.03519	1	3522	3522		45.972	5.1941	1	382330			75157	6860	52407	52494	82601	82601					-0.01964321941795788
SPQGDGTPL	9	Unmodified	_SPQGDGTPL_					0	0	0			REV__nc|ENSG00000119314|O95758-1|PTBP3	REV__nc|ENSG00000119314|O95758-1|PTBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2475891113281	2	436.211432	870.408311	-0.1157	-5.0471E-05	1.5198	0.00066294	1.4041	0.00061246	436.2121360285496	35.023	0.47519	35.067	34.868	35.343	0.04406					18	12	2	0	0	0	0.022083	1	2599	2599		76.774	0	1	81368	+		75158	22448	52408	52495	82602	82602					-0.03207657787265816
SPQGLGHLPL	10	Unmodified	_SPQGLGHLPL_					0	0	0			REV__ENST00000458198.2_1_5:133745684-133747438:-|nuORF	REV__ENST00000458198.2_1_5:133745684-133747438:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.291748046875	2	509.787641	1017.56073	0.083505	4.257E-05	3.1025	0.0015816	3.186	0.0016242	509.78786717027975	57.7	0.59554	57.526	57.229	57.825	-0.1749					44	15	5	0	0	0	1.0508	1	6461	6461		39.253	2.0937	1	2690500	+		75159	32821	52409	52496	82603	82603					0.052651626801548446
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(99)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7629699707031	2	502.763309	1003.51206	-0.64596	-0.00032476	-0.058117	-2.9219E-05	-0.70408	-0.00035398	502.76315417282956	33.185	1.3611	33.185	32.494	33.855	0					82	36	3	0	0	0	0.15388	1	2372	2372		98.582	6.3914	1	3576700			75160	7950	52410	52497	82604	82604		330			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(110)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7630310058594	2	502.763309	1003.51206	-0.76204	-0.00038313	0.1768	8.8887E-05	-0.58525	-0.00029424	502.7632938474593	35.564	2.7587	35.564	34.168	36.927	0					136	73	2	0	0	0	0.087669	1	2767	2767		114.89	15.52	1	2380600			75161	7950	52410	52497	82605	82605		330			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(130)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7629089355469	2	502.763309	1003.51206	-0.78337	-0.00039385	-0.063072	-3.171E-05	-0.84644	-0.00042556	502.7631467064836	33.044	1.4358	33.051	32.445	33.881	0.0066261					80	38	3	0	0	0	0.056725	3	2342	2320;2330;2342		126.24	26.705	1	3640900			75162	7950	52410	52497	82606;82607;82608	82608		330			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(120)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.76336669921875	2	502.763309	1003.51206	-1.0743	-0.00054009	0.40808	0.00020517	-0.66618	-0.00033493	502.763421843871	35.427	2.5075	35.405	34.244	36.751	-0.021763					114	66	2	0	0	0	0.079716	1	2717	2717		117.81	30.115	1	2320000			75163	7950	52410	52497	82609	82609		330			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(130)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.76275634765625	2	502.763309	1003.51206	0.38631	0.00019422	-1.3753	-0.00069145	-0.98899	-0.00049723	502.7625043169666	32.916	0.96723	32.979	32.577	33.544	0.062885					60	25	3	0	0	0	0.042502	3	2263	2263;2275;2287		131.62	39.426	1	3580900			75164	7950	52410	52497	82610;82611;82612	82610		330			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(100)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7635192871094	2	502.763309	1003.51206	-0.41673	-0.00020952	-0.27364	-0.00013758	-0.69037	-0.00034709	502.7630782714275	35.548	2.8084	35.592	34.041	36.849	0.04406					126	74	2	0	0	0	0.14181	3	2684	2684;2696;2708		101.25	16.337	1	2091900			75165	7950	52410	52497	82613;82614;82615	82613		330			0.01044926048734851
SPQGRVMTI	9	Unmodified	_SPQGRVMTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7655029296875	2	494.765852	987.51715	0.55093	0.00027258	-0.96404	-0.00047697	-0.41311	-0.00020439	494.7653325915531	42.126	0.92178	42.126	41.793	42.715	0					41	26	2	0	0	0	0.030064	3	3868	3844;3855;3868		141.52	53.766	1	5816600			75166	7950	52410	52498	82616;82617;82618	82618					0.022892299113550507
SPQGRVMTI	9	Unmodified	_SPQGRVMTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7657470703125	2	494.765852	987.51715	-0.13501	-6.68E-05	-0.13194	-6.5281E-05	-0.26696	-0.00013208	494.765734084459	42.286	1.2456	42.154	41.753	42.998	-0.13219					53	35	2	0	0	0	0.094442	1	3850	3850		112.41	13.036	1	5967300			75167	7950	52410	52498	82619	82619					0.022892299113550507
SPQGRVMTI	9	Unmodified	_SPQGRVMTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	OPSCC_39_ClassI_Rep-3	3	494.7657470703125	2	494.765852	987.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.235	1	42.261	41.761	42.761	0.026012								0	0	0	0.048917	1	3811	3811		109.48	24.119	1				75168	7950	52410	52498	82620	82620					0.022892299113550507
SPQGRVMTI	9	Unmodified	_SPQGRVMTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MSMS	OPSCC_39_ClassI_Rep-3	3	494.76629638671875	2	494.765852	987.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.303	1	42.329	41.829	42.829	0.026012								0	0	0	0.13281	1	3823	3823		85.161	11.186	1				75169	7950	52410	52498	82621	82621					0.022892299113550507
SPQGRVMTI	9	Unmodified	_SPQGRVMTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.765852	987.51715	-0.37671	-0.00018638	0.20849	0.00010315	-0.16822	-8.323E-05	494.76480087208984	42.33	0.40862	42.098	41.904	42.312	-0.23186	-0.02803	0.00050899	NaN	141.52	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84963			75170	7950	52410	52498							0.022892299113550507
SPQKERDV	8	Unmodified	_SPQKERDV_					0	0	0			REV__ENSG00000078399|ENST00000343483|HOXA9	REV__ENSG00000078399|ENST00000343483|HOXA9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7865905761719	2	479.751256	957.487959	-0.26137	-0.00012539	0.52603	0.00025236	0.26466	0.00012697	479.7511920179572	24.99	0.47916	24.815	24.598	25.077	-0.17484					12	10	2	0	0	0	0.027866	1	1147	1147		65.803	0	1	31325	+		75171	20610	52411	52499	82622	82622					0.007514088867196733
SPQKLYHR	8	Unmodified	_SPQKLYHR_					0	0	0		ENST00000572418.1_1_17:3807220-3819678:-|nuORF	ENST00000572418.1_1_17:3807220-3819678:-|nuORF	ENST00000572418.1_1_17:3807220-3819678:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.76318359375	2	514.785433	1027.55631	-0.18824	-9.6902E-05	-0.43464	-0.00022375	-0.62288	-0.00032065	514.7848889977378	42.244	0.71391	42.013	41.58	42.294	-0.23029					27	19	2	0	0	0	0.027866	1	3807	3807		21.96	0	1	258810			75172	17057	52412	52500	82623	82623					0.043636982572252236
SPQKTMSVL	9	Unmodified	_SPQKTMSVL_					0	0	0		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.T1372Qfs*50|1|0.1|ENSG00000067369|chr15:43421144-43421147|CGTC/-|frameshift_variant	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.768310546875	2	495.76806	989.521567	0.57081	0.00028299	0.3583	0.00017764	0.92911	0.00046062	495.7679163324744	41.914	0.84592	41.914	41.615	42.461	0					51	24	3	0	0	0	0.1158	1	3821	3821		107.01	5.4068	1	3162900			75173	1361	52413	52501	82624	82624					0.02638694334268621
SPQLHRISV	9	Unmodified	_SPQLHRISV_					0	0	0		ENST00000568535.1_1_15:73028121-73029372:+|nuORF	ENST00000568535.1_1_15:73028121-73029372:+|nuORF	ENST00000568535.1_1_15:73028121-73029372:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.8001708984375	2	518.79854	1035.58253	-0.21114	-0.00010954	3.7845	0.0019634	3.5733	0.0018538	518.800350873803	63.355	1.013	63.132	62.774	63.787	-0.223					73	25	4	0	0	0	0.31037	1	7161	7161		74.255	6.7614	1	5383100			75174	16984	52414	52502	82625	82625					0.06615967428683689
SPQLQIAKTLD	11	Unmodified	_SPQLQIAKTLD_					0	0	0			REV__ENSG00000143643|ENST00000366661|TTC13	REV__ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.7378845214844	3	405.231077	1212.6714	-0.11973	-4.8518E-05	2.1447	0.0008691	2.025	0.00082058	405.2316651413874	36.416	0.82342	36.373	36.101	36.925	-0.042458					29	21	2	0	0	0	0.024734	1	2831	2831		18.966	1.7996	1	207620	+		75175	24271	52415	52503	82626	82626					0.07357337877715509
SPQLSLVP	8	Unmodified	_SPQLSLVP_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.7439880371094	2	420.744911	839.475269	-0.63911	-0.0002689	-2.6212	-0.0011029	-3.2603	-0.0013718	420.7438491452349	27.388	1.8086	27.469	27.136	28.945	0.081291					105	45	4	0	0	0	0.94517	1	1428	1428		45.952	0	1	10915000	+		75176	28398;37672	52416	52504	82627	82627					0.04910997494482672
SPQPQRAQL	9	Unmodified	_SPQPQRAQL_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.7796630859375	2	512.780348	1023.54614	-0.61545	-0.00031559	0.42251	0.00021665	-0.19294	-9.8938E-05	512.7804103470908	31.81	0.47903	31.81	31.591	32.07	0					37	11	4	0	0	0	0.34489	1	2150	2150		69.628	3.1983	1	2026600			75177	2992	52417	52505	82628	82628					0.03531090531987502
SPQPQRAQL	9	Unmodified	_SPQPQRAQL_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.7799072265625	2	512.780348	1023.54614	-0.37357	-0.00019156	0.23344	0.0001197	-0.14013	-7.1857E-05	512.7803391877164	31.699	0.79501	31.71	31.465	32.26	0.011797					42	19	4	0	0	0	0.14024	2	2121	2121;2134		101.6	35.171	1	1987500			75178	2992	52417	52505	82629;82630	82629					0.03531090531987502
SPQPQRAQL	9	Unmodified	_SPQPQRAQL_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.77978515625	2	512.780348	1023.54614	-0.63473	-0.00032548	0.44215	0.00022673	-0.19258	-9.875E-05	512.7804205452987	31.445	0.68145	31.514	31.124	31.805	0.06896					41	13	4	0	0	0	0.22902	2	2058	2047;2058		85.161	18.732	1	1929600			75179	2992	52417	52505	82631;82632	82632					0.03531090531987502
SPQPQRAQL	9	Unmodified	_SPQPQRAQL_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.780348	1023.54614	0.0082603	4.2357E-06	2.8985	0.0014863	2.9068	0.0014905	512.7795912189144	31.934	0.46929	31.697	31.529	31.998	-0.23666	0.014504	0.0025327	NaN	101.6	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134150			75180	2992	52417	52505							0.03531090531987502
SPQPYDQKD	9	Unmodified	_SPQPYDQKD_					0	0	0			REV__nc|ENSG00000138162|O95359-1|TACC2	REV__nc|ENSG00000138162|O95359-1|TACC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2804565429688	2	539.246003	1076.47745	-0.39807	-0.00021466	-0.076738	-4.1381E-05	-0.4748	-0.00025604	539.2457882356905	42.348	0.68484	42.225	41.998	42.683	-0.12299					29	17	3	0	0	0	0.02435	1	3816	3816		26.693	0	1	579650	+		75181	23829	52418	52506	82633	82633					-0.057726185583760525
SPQQRWRA	8	Unmodified	_SPQQRWRA_					0	0	0		ENSG00000111341|ENST00000539261|MGP;nc|ENSG00000111341|P08493-2|MGP	ENSG00000111341|ENST00000539261|MGP	ENSG00000111341|ENST00000539261|MGP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7902221679688	2	514.772857	1027.53116	-0.090722	-4.6701E-05	-4.0155	-0.0020671	-4.1062	-0.0021138	514.7696007628348	41.343	0.13771	41.343	41.258	41.396	0					5	3	2	0	0	0	0.027866	1	3705	3705		24.203	0	1	37730			75182	3108	52419	52507	82634	82634					0.018496434546477758
SPQRIASAV	9	Unmodified	_SPQRIASAV_					0	0	0		nc|ENSG00000112139|Q8NFP4-2|MDGA1;ENSG00000112139|ENST00000434837|MDGA1	nc|ENSG00000112139|Q8NFP4-2|MDGA1	nc|ENSG00000112139|Q8NFP4-2|MDGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.76416015625	2	464.764166	927.513779	-0.47621	-0.00022133	-0.57139	-0.00026556	-1.0476	-0.00048689	464.76385631251856	33.461	1.0306	33.467	32.85	33.881	0.0066261					72	27	5	0	0	0	0.5973	1	2413	2413		52.937	0	1	16599000			75183	3174	52420	52508	82635	82635					0.04712303128997064
SPQRLLGLGL	10	Unmodified	_SPQRLLGLGL_					0	0	0		ENST00000512379.5_1_17:48610205-48619515:+|nuORF	ENST00000512379.5_1_17:48610205-48619515:+|nuORF	ENST00000512379.5_1_17:48610205-48619515:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3057861328125	2	527.324391	1052.63423	-0.68838	-0.000363	0.070538	3.7196E-05	-0.61784	-0.0003258	527.3243501514219	32.099	0.67381	32.111	31.702	32.376	0.011799					37	16	3	0	0	0	0.03519	1	2126	2126		6.3127	0	1	345360			75184	15856	52421	52509	82636	82636					0.11001711122617053
SPQRSMPP	8	Unmodified	_SPQRSMPP_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2615966796875	2	450.22382	898.433086	0.077823	3.5038E-05	-4.3459	-0.0019566	-4.2681	-0.0019216	450.221682950623	41.464	0.56858	41.329	41.022	41.591	-0.13553					20	14	2	0	0	0	0.027866	1	3629	3629		58.782	0	1	203090			75185	7764	52422	52510	82637	82637					-0.02019301185544009
SPQRTVQAL	9	Unmodified	_SPQRTVQAL_					0	0	0		nc|ENSG00000182177|Q6ZVZ8-2|ASB18;ENSG00000182177|ENST00000409749|ASB18	nc|ENSG00000182177|Q6ZVZ8-2|ASB18	nc|ENSG00000182177|Q6ZVZ8-2|ASB18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.8209533691406	2	500.282723	998.550893	-0.71654	-0.00035847	0.98308	0.00049182	0.26654	0.00013335	500.2830043446828	39.928	0.71461	39.952	39.634	40.349	0.023174					43	19	3	0	0	0	0.024484	1	3379	3379		37.812	20.447	1	1151100			75186	9109	52423	52511	82638	82638					0.051559746747557256
SPQSAAAEL	9	Unmodified	_SPQSAAAEL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.21929931640625	2	437.219257	872.423961	-0.52555	-0.00022978	0.24108	0.0001054	-0.28448	-0.00012438	437.21931968110596	44.674	1.2328	44.674	44.281	45.514	0					98	35	4	0	0	0	0.013065	6	4292	4258;4268;4279;4292;4306;4318		190.26	33.053	1	11571000			75187	1174	52424	52512	82639;82640;82641;82642;82643;82644	82642					-0.017353712702515622
SPQSAAAEL	9	Unmodified	_SPQSAAAEL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.21923828125	2	437.219257	872.423961	-0.85334	-0.0003731	0.6319	0.00027628	-0.22144	-9.6817E-05	437.2194949107216	44.817	1.2591	44.668	44.19	45.449	-0.1488					95	36	4	0	0	0	0.013065	5	4285	4265;4274;4285;4299;4312		171.53	40.707	1	10430000			75188	1174	52424	52512	82645;82646;82647;82648;82649	82647					-0.017353712702515622
SPQSAAAEL	9	Unmodified	_SPQSAAAEL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.21942138671875	2	437.219257	872.423961	0.065218	2.8515E-05	-0.29294	-0.00012808	-0.22772	-9.9563E-05	437.2190896444106	44.649	1.3013	44.686	44.306	45.607	0.0369					93	37	4	0	0	0	0.013065	5	4222	4199;4210;4222;4235;4249		195.81	38.605	1	10285000			75189	1174	52424	52512	82650;82651;82652;82653;82654	82652					-0.017353712702515622
SPQSIKSVS	9	Unmodified	_SPQSIKSVS_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.7614440917969	2	466.756007	931.497461	0.051353	2.3969E-05	1.8395	0.0008586	1.8909	0.00088257	466.7568684614237	29.397	0.7232	29.476	29.368	30.091	0.078344					24	17	2	0	0	0	0.024313	1	1750	1750		42.864	0	1	777090	+		75190	28659	52425	52513	82655	82655					0.028971771722467565
SPQSPGDAL	9	Unmodified	_SPQSPGDAL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	436.211669921875	2	436.211432	870.408311	0.26425	0.00011527	0.15339	6.691E-05	0.41764	0.00018218	436.2114349884919	42.729	0.94306	42.729	42.389	43.332	0					76	25	4	0	0	0	0.057894	4	3956	3934;3944;3956;3968		125.81	21.246	1	7343100			75191	1195	52426	52514	82656;82657;82658;82659	82658					-0.03207657787288554
SPQSPGDAL	9	Unmodified	_SPQSPGDAL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.2117004394531	2	436.211432	870.408311	0.18321	7.992E-05	0.21094	9.2014E-05	0.39415	0.00017193	436.2114642740097	42.891	1.1613	42.751	42.413	43.575	-0.13929					78	31	4	0	0	0	0.057894	4	3951	3940;3951;3963;3974		125.81	21.453	1	7495800			75192	1195	52426	52514	82660;82661;82662;82663	82661					-0.03207657787288554
SPQSPGDAL	9	Unmodified	_SPQSPGDAL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.2117919921875	2	436.211432	870.408311	0.53867	0.00023498	-0.090087	-3.9297E-05	0.44859	0.00019568	436.2113033738911	42.722	1.2314	42.748	42.393	43.624	0.026016					85	33	4	0	0	0	0.043667	4	3886	3877;3886;3900;3912		131.03	26.615	1	6782100			75193	1195	52426	52514	82664;82665;82666;82667	82665					-0.03207657787288554
SPQSSPRL	8	Unmodified	_SPQSSPRL_					0	0	0		nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;nc|ENSG00000110931|Q96RR4-7|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2;ENST00000535524.1_1_12:121691250-121712353:-|nuORF;ENST00000542540.5_1_12:121708713-121712128:-|nuORF	nc|ENSG00000110931|Q96RR4-6|CAMKK2	nc|ENSG00000110931|Q96RR4-6|CAMKK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2476501464844	2	436.235242	870.45593	-0.75543	-0.00032955	-3.6621	-0.0015975	-4.4175	-0.0019271	436.2340147109225	35.047	0.29147	35.026	34.905	35.196	-0.021763					11	7	2	0	0	0	0.027866	1	2677	2677		58.782	0	1	95325			75194	3077	52427	52515	82668	82668					0.015520412035812114
SPQTQRELD	9	Unmodified	_SPQTQRELD_					0	0	0			REV__BLM|p.E546Q|1|0.08|ENSG00000197299|chr15:90761009-90761009|G/C|missense_variant	REV__BLM|p.E546Q|1|0.08|ENSG00000197299|chr15:90761009-90761009|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2965087890625	2	537.264727	1072.5149	0.76509	0.00041106	2.8146	0.0015122	3.5797	0.0019232	537.2661179771002	63.337	1.0003	63.391	63.09	64.09	0.054104					65	27	4	0	0	0	0.024367	1	7280	7280		29.17	0	1	2623000	+		75195	19210	52428	52516	82669	82669					-0.018455272927667465
SPQTRFTL	8	Unmodified	_SPQTRFTL_					0	0	0			REV__ENSG00000139178|ENST00000266542|C1RL	REV__ENSG00000139178|ENST00000266542|C1RL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7924499511719	2	475.258717	948.50288	0.4128	0.00019619	1.1681	0.00055517	1.5809	0.00075135	475.2591965099015	50.686	0.84539	50.537	50.162	51.008	-0.14915					49	24	3	0	0	0	0.027866	1	5259	5259		37.159	0	1	1271000	+		75196	23921	52429	52517	82670	82670					0.026569007547209367
SPQTRFTL	8	Unmodified	_SPQTRFTL_					0	0	0			REV__ENSG00000139178|ENST00000266542|C1RL	REV__ENSG00000139178|ENST00000266542|C1RL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.258717	948.50288	0.2683	0.00012751	3.0833	0.0014654	3.3516	0.0015929	475.2600316297594	50.824	1.0514	50.548	50.262	51.313	-0.27643	0.066065	0.00021451	NaN	29.15	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1871300	+		75197	23921	52429	52517							0.026569007547209367
SPRARPKEL	9	Unmodified	_SPRARPKEL_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3115844726562	2	527.311815	1052.60908	-1.6729	-0.00088211	1.1404	0.00060134	-0.53247	-0.00028078	527.3123118984294	20.396	0.77255	20.396	20.078	20.85	0					42	15	4	0	0	0	0.54416	1	535	535		56.434	1.6575	1	661110			75198	9057	52430	52518	82671	82671					0.08487656320039605
SPRARPKEL	9	Unmodified	_SPRARPKEL_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.311815	1052.60908	-0.079405	-4.1871E-05	-0.079443	-4.1891E-05	-0.15885	-8.3762E-05	527.3116320295466	20.69	0.48792	20.523	20.296	20.784	-0.16774	-0.011577	-1.2983E-05	NaN	56.434	27	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134440			75199	9057	52430	52518							0.08487656320039605
SPRARPKEL	9	Unmodified	_SPRARPKEL_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.311815	1052.60908	0.38894	0.00020509	-0.33761	-0.00017803	0.051325	2.7064E-05	527.3114568971781	20.802	0.54153	20.607	20.336	20.877	-0.19577	0.072388	-0.00028525	NaN	56.434	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132250			75200	9057	52430	52518							0.08487656320039605
SPRARPKEL	9	Unmodified	_SPRARPKEL_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.311815	1052.60908	-0.63201	-0.00033327	0.54029	0.0002849	-0.091726	-4.8368E-05	527.3119369248525	20.866	0.44651	20.644	20.416	20.862	-0.22242	0.10955	0.0006406	NaN	56.434	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107430			75201	9057	52430	52518							0.08487656320039605
SPRARPSL	8	Unmodified	_SPRARPSL_					0	0	0		ENST00000301765.9_1_11:60899010-60899583:-|nuORF	REV__ENST00000301765.9_1_11:60899010-60899583:-|nuORF	REV__ENST00000301765.9_1_11:60899010-60899583:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2716064453125	2	442.259051	882.503549	0.05503	2.4337E-05	-1.127	-0.00049845	-1.072	-0.00047411	442.2586268551888	46.47	0.16865	46.522	46.375	46.544	0.051395					5	4	2	0	0	0	0.027866	1	4526	4526		84.916	0	1	64848			75202	11936	52431	52519	82672	82672					0.05759740194423557
SPRASMGVL	9	Oxidation (M)	_SPRASM(Oxidation (M))GVL_		SPRASM(1)GVL		SPRASM(72)GVL	0	0	1		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2445983886719	2	467.244752	932.474951	-0.69279	-0.0003237	0.92651	0.00043291	0.23373	0.00010921	467.24492582646144	32.943	0.64273	32.943	32.679	33.321	0					47	16	5	0	0	0	0.32811	1	2325	2325		71.877	13.096	1	2486300			75203	1361	52432	52520	82673	82673		41			0.006012545029875582
SPRASMGVL	9	Oxidation (M)	_SPRASM(Oxidation (M))GVL_		SPRASM(1)GVL		SPRASM(64)GVL	0	0	1		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.24481201171875	2	467.244752	932.474951	0.81446	0.00038055	-0.80021	-0.0003739	0.014243	6.6548E-06	467.2441581401615	32.683	0.96466	32.746	32.465	33.43	0.062889					55	25	4	0	0	0	0.42604	2	2244	2234;2244		64.207	9.8968	1	2843800			75204	1361	52432	52520	82674;82675	82675		41			0.006012545029875582
SPRASMGVL	9	Oxidation (M)	_SPRASM(Oxidation (M))GVL_					0	0	1		ENST00000411772.5_2_15:43699583-43738985:-|nuORF;ENST00000572085.5_1_15:43707600-43785241:-|nuORF;TP53BP1|p.C1825Lfs*9|1|0.12|ENSG00000067369|chr15:43409010-43409011|-/G|frameshift_variant;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000411772.5_2_15:43699583-43738985:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	467.244752	932.474951	0.086962	4.0633E-05	6.4854	0.0030303	6.5723	0.0030709	467.2478173494057	33.077	0.40746	32.877	32.609	33.016	-0.20019	0.024874	0.005885	NaN	71.877	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109900			75205	1361	52432	52520				41			0.006012545029875582
SPRAVSTTF	9	Unmodified	_SPRAVSTTF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2558288574219	2	483.256174	964.497795	-0.079565	-3.845E-05	0.047326	2.2871E-05	-0.032238	-1.5579E-05	483.2560648156431	39.131	0.86309	39.131	38.797	39.661	0					69	24	4	0	0	0	0.12602	2	3334	3334;3346		104.75	16.104	1	4159000			75206	1331	52433	52521	82676;82677	82676					0.014125968920893683
SPRAVSTTF	9	Unmodified	_SPRAVSTTF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2563781738281	2	483.256174	964.497795	-0.69184	-0.00033434	0.63249	0.00030565	-0.059356	-2.8684E-05	483.25635086536585	39.121	1.1378	39.022	38.552	39.69	-0.098755					85	31	4	0	0	0	0.45795	1	3335	3335		62.107	3.3255	1	3750800			75207	1331	52433	52521	82678	82678					0.014125968920893683
SPRAVSTTF	9	Unmodified	_SPRAVSTTF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.25634765625	2	483.256174	964.497795	-1.0898	-0.00052664	1.3254	0.00064049	0.2356	0.00011385	483.2566630105334	39.268	1.0233	39.292	38.919	39.942	0.023727					70	28	4	0	0	0	0.31037	1	3306	3306		74.255	0	1	3485400			75208	1331	52433	52521	82679	82679					0.014125968920893683
SPRDPVLTL	9	Unmodified	_SPRDPVLTL_					0	0	0		ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.287109375	2	499.287474	996.560395	-0.12558	-6.2702E-05	-0.44748	-0.00022342	-0.57306	-0.00028612	499.2872665484356	55.766	1.0869	55.61	55.16	56.247	-0.15601					73	29	3	0	0	0	0.19099	1	6145	6145		90.37	8.1293	1	22451000			75209	8683	52434	52522	82680	82680					0.061977429602734446
SPRDSPAVSL	10	Unmodified	_SPRDSPAVSL_					0	0	0		ENSG00000131149|ENST00000253458|GSE1;nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7713623046875	2	514.772188	1027.52982	-0.58809	-0.00030273	0.27005	0.00013901	-0.31804	-0.00016372	514.7723536128551	43.406	1.1542	43.267	42.809	43.963	-0.13929					69	31	4	0	0	0	0.58878	1	4047	4047		78.264	10.77	1	7243900			75210	4501	52435	52523	82681	82681					0.017159645752371944
SPRDSPAVSL	10	Unmodified	_SPRDSPAVSL_					0	0	0		ENSG00000131149|ENST00000253458|GSE1;nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.771240234375	2	514.772188	1027.52982	-0.14548	-7.4888E-05	-0.29862	-0.00015372	-0.4441	-0.00022861	514.7720964758048	43.328	1.2248	43.358	43.01	44.235	0.030827					70	33	4	0	0	0	0.72729	1	3995	3995		65.465	5.3471	1	7353200			75211	4501	52435	52523	82682	82682					0.017159645752371944
SPRELSFKKG	10	Unmodified	_SPRELSFKKG_					0	0	0		nc|ENSG00000196220|O43295-2|SRGAP3;IRAK2-SRGAP3|2|fusion;ENSG00000196220|ENST00000383836|SRGAP3;IRAK2-SRGAP3|1|fusion;ENST00000520860.1_1_3:9035785-9036205:-|nuORF	nc|ENSG00000196220|O43295-2|SRGAP3	nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.8230590820312	2	574.824755	1147.63496	-1.0457	-0.00060112	0.63546	0.00036528	-0.41028	-0.00023584	574.825014748844	44.677	0.61301	44.529	44.288	44.901	-0.1488					33	17	2	0	0	0	0.03519	1	4325	4325		35.152	0	1	1324700			75212	9838	52436	52524	82683	82683					0.06704505771654112
SPRENILVSL	10	Unmodified	_SPRENILVSL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.3245239257812	2	564.324588	1126.63462	-1.3733	-0.000775	0.45679	0.00025778	-0.91654	-0.00051723	564.3247825498618	62.095	1.2602	62.095	61.72	62.98	0					71	35	4	0	0	0	0.29487	1	7208	7208		109.48	4.7318	1	15817000			75213	2061	52437	52525	82684	82684					0.07637086051818187
SPRENILVSL	10	Unmodified	_SPRENILVSL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.3241577148438	2	564.324588	1126.63462	-1.4956	-0.000844	0.087224	4.9223E-05	-1.4084	-0.00079478	564.3245552934934	62.003	1.3634	62.066	61.735	63.098	0.062763					80	35	5	0	0	0	0.49336	1	7113	7113		89.029	6.7883	1	15960000			75214	2061	52437	52525	82685	82685					0.07637086051818187
SPREPASKV	9	Unmodified	_SPREPASKV_					0	0	0		ENST00000368989.6_2_10:124187820-124189451:+|nuORF;ENSG00000107679|ENST00000368990|PLEKHA1	ENST00000368989.6_2_10:124187820-124189451:+|nuORF	ENST00000368989.6_2_10:124187820-124189451:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	485.76910400390625	2	485.769448	969.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.813	1	20.709	20.209	21.209	-0.10477								0	0	0	0.31227	1	573	573		67.494	7.3754	1				75215	2848	52438	52526	82686	82686					0.03836285783427229
SPREPRRTV	9	Unmodified	_SPREPRRTV_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3121948242188	2	549.312346	1096.61014	0.76314	0.0004192	-1.0831	-0.00059496	-0.31997	-0.00017576	549.3116901827294	19.194	0.53915	19.194	18.972	19.511	0					33	10	5	0	0	0	0.32811	2	383	373;383		71.877	3.6343	1	516770			75216	923	52439	52527	82687;82688	82688					0.06569870688940682
SPREPRRTV	9	Unmodified	_SPREPRRTV_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3118896484375	2	549.312346	1096.61014	2.0921	0.0011492	-2.1336	-0.001172	-0.04152	-2.2807E-05	549.3110616545137	19.441	0.49349	19.507	19.242	19.735	0.066195					31	9	5	0	0	0	0.67687	1	364	364		47.657	6.8792	1	392860			75217	923	52439	52527	82689	82689					0.06569870688940682
SPRFKTSV	8	Unmodified	_SPRFKTSV_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.26116943359375	2	461.261259	920.507966	-0.94356	-0.00043523	1.0391	0.0004793	0.095553	4.4075E-05	461.26157317634863	29.364	0.89797	29.119	28.838	29.736	-0.24524					47	20	4	0	0	0	0.76379	1	1796	1796		62.107	6.6032	1	733040			75218	4345	52440	52528	82690	82690					0.0445320461733445
SPRFKTSV	8	Unmodified	_SPRFKTSV_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	461.2605285644531	2	461.261259	920.507966	-0.56978	-0.00026282	0.61414	0.00028328	0.044365	2.0464E-05	461.26141941742327	29.264	0.81055	29.092	28.85	29.66	-0.17258					28	18	2	0	0	0	0.85462	1	1777	1777		54.722	6.8067	1	909450			75219	4345	52440	52528	82691	82691					0.0445320461733445
SPRFSGSAF	9	Unmodified	_SPRFSGSAF_					0	0	0		ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.2351989746094	2	478.235242	954.45593	0.088172	4.2167E-05	-0.31302	-0.0001497	-0.22485	-0.00010753	478.23496601051403	44.915	0.7879	44.915	44.587	45.375	0					62	22	4	0	0	0	0.17845	2	4335	4335;4346		93.143	24.659	1	4847700			75220	6435	52441	52529	82692;82693	82692					-0.02311958796417457
SPRFSGSAF	9	Unmodified	_SPRFSGSAF_					0	0	0		ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.23565673828125	2	478.235242	954.45593	-0.46042	-0.00022019	0.23451	0.00011215	-0.22591	-0.00010804	478.23528966741213	45.102	0.9926	44.953	44.422	45.415	-0.1488					86	28	5	0	0	0	0.45795	1	4359	4359		62.107	15.341	1	4762800			75221	6435	52441	52529	82694	82694					-0.02311958796417457
SPRFSGSAF	9	Unmodified	_SPRFSGSAF_					0	0	0		ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2354431152344	2	478.235242	954.45593	-0.11002	-5.2617E-05	-0.11159	-5.3367E-05	-0.22162	-0.00010598	478.23506942168814	44.95	0.72152	44.993	44.688	45.409	0.043877					56	20	4	0	0	0	0.22902	3	4271	4271;4283;4297		85.161	19.506	1	4537200			75222	6435	52441	52529	82695;82696;82697	82695					-0.02311958796417457
SPRGAGYLF	9	Unmodified	_SPRGAGYLF_					0	0	0		ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENST00000566749.5_1_16:30094185-30096380:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2530822753906	2	484.253434	966.492316	0.17734	8.5876E-05	-0.33267	-0.0001611	-0.15533	-7.5221E-05	484.25323939594875	52.454	1.5806	52.306	51.985	53.566	-0.14723					85	41	4	0	0	0	0.33245	1	5579	5579		71.296	5.4925	1	9733500			75223	6123	52442	52530	82698	82698					0.007729181002900987
SPRGAGYTF	9	Unmodified	_SPRGAGYTF_					0	0	0		ENST00000523804.1_1_8:30651411-30651755:-|nuORF;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.2347412109375	2	478.235242	954.45593	-0.60546	-0.00028955	0.47522	0.00022727	-0.13024	-6.2286E-05	478.2353778318923	39.881	0.70791	39.769	39.5	40.208	-0.11222					40	18	3	0	0	0	0.11092	1	3454	3454		108.09	39.603	1	1413600			75224	2589	52443	52531	82699	82699					-0.023119587964288257
SPRGAGYTF	9	Unmodified	_SPRGAGYTF_					0	0	0		ENST00000523804.1_1_8:30651411-30651755:-|nuORF;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.235242	954.45593	0.91425	0.00043722	-1.2116	-0.00057943	-0.29735	-0.0001422	478.234600706076	39.861	0.75414	39.861	39.627	40.381	0	0.074185	-0.00071208	NaN	108.09	44	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1981800			75225	2589	52443	52531							-0.023119587964288257
SPRGAGYTF	9	Unmodified	_SPRGAGYTF_					0	0	0		ENST00000523804.1_1_8:30651411-30651755:-|nuORF;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.235242	954.45593	-0.71295	-0.00034096	-7.372	-0.0035256	-8.085	-0.0038665	478.23129152128297	39.707	0.31046	39.731	39.598	39.908	0.023727	-0.056102	-0.0066043	NaN	108.09	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87164			75226	2589	52443	52531							-0.023119587964288257
SPRGEASSL	9	Unmodified	_SPRGEASSL_					0	0	0		nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;ENST00000552109.5_1_12:42554393-42631425:-|nuORF;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2;ENST00000550315.1_1_12:42554393-42554687:-|nuORF	nc|ENSG00000015153|Q8IY57-3|YAF2	nc|ENSG00000015153|Q8IY57-3|YAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.230224609375	2	452.230156	902.445759	-0.23433	-0.00010597	-0.24529	-0.00011093	-0.47962	-0.0002169	452.23007874856705	26.82	1.3423	26.807	26.537	27.88	-0.012983					52	34	2	0	0	0	0.15366	1	1387	1387		98.629	2.4389	1	6805100			75227	929	52444	52532	82700	82700					-0.009365665216591879
SPRGEASSL	9	Unmodified	_SPRGEASSL_					0	0	0		nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;ENST00000552109.5_1_12:42554393-42631425:-|nuORF;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2;ENST00000550315.1_1_12:42554393-42554687:-|nuORF	nc|ENSG00000015153|Q8IY57-3|YAF2	nc|ENSG00000015153|Q8IY57-3|YAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2301330566406	2	452.230156	902.445759	-0.34562	-0.0001563	-0.015455	-6.9894E-06	-0.36108	-0.00016329	452.23016298377263	26.524	1.6074	26.605	25.75	27.357	0.081291					99	39	6	0	0	0	0.086035	3	1318	1306;1318;1331		115.49	13.893	1	6063100			75228	929	52444	52532	82701;82702;82703	82702					-0.009365665216591879
SPRGFPLGL	9	Unmodified	_SPRGFPLGL_					0	0	0		SLAIN2-CWH43|2|fusion;SLAIN2-CWH43|1|fusion;ENSG00000109171|ENST00000264313|SLAIN2	SLAIN2-CWH43|2|fusion;ENSG00000109171|ENST00000264313|SLAIN2	SLAIN2-CWH43|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2718200683594	2	472.271627	942.528701	-0.13155	-6.2128E-05	0.080555	3.8044E-05	-0.050996	-2.4084E-05	472.2715521784319	64.723	0.85641	64.769	64.372	65.229	0.045418					54	22	4	0	0	0	0.2508	1	7581	7581		82.241	10.945	1	4739600			75229	37877;2966	52445	52533	82704	82704					0.055137949969775946
SPRGGASPK	9	Unmodified	_SPRGGASPK_					0	0	0		ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	ENST00000492552.5_1_3:23987629-24018907:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.2275695800781	2	428.735409	855.456264	-0.39038	-0.00016737	2.2888	0.00098128	1.8984	0.00081392	428.73573356033694	27.273	0.66699	27.26	26.869	27.536	-0.012983					35	17	3	0	0	0	0.024484	1	1475	1475		23.523	4.4192	1	233810			75230	15483	52446	52534	82705	82705					0.022754609234198142
SPRGSGSSTSL	11	Unmodified	_SPRGSGSSTSL_					0	0	0		ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2566528320312	2	518.256902	1034.49925	-0.8297	-0.00043	0.40558	0.00021019	-0.42412	-0.00021981	518.257083049947	24.2	1.1803	24.2	23.694	24.874	0					64	26	5	0	0	0	0.064447	2	1028	1028;1052		117.53	19.891	1	2498200			75231	1944	52447	52535	82706;82707	82706					-0.01661813809778323
SPRGSGSSTSL	11	Unmodified	_SPRGSGSSTSL_					0	0	0		ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	ENSG00000090924|ENST00000425673|PLEKHG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2567138671875	2	518.256902	1034.49925	-1.1289	-0.00058507	0.7396	0.0003833	-0.38931	-0.00020176	518.257257262361	24.244	1.146	24.197	23.656	24.802	-0.047148					69	25	5	0	0	0	0.073648	2	1035	1013;1035		114.86	14.147	1	2612400			75232	1944	52447	52535	82708;82709	82709					-0.01661813809778323
SPRGSTDSL	9	Unmodified	_SPRGSTDSL_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	460.2282409667969	2	460.227613	918.440674	-0.59309	-0.00027296	0.78544	0.00036148	0.19235	8.8527E-05	460.22780004288194	25.424	0.90792	25.424	25.135	26.043	0					57	21	4	0	0	0	0.1158	1	1201	1201		107.01	0.5923	1	1883300			75233	3098	52448	52536	82710	82710					-0.021808703842907562
SPRGSTDSL	9	Unmodified	_SPRGSTDSL_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.22821044921875	2	460.227613	918.440674	-0.69693	-0.00032075	0.99352	0.00045725	0.29659	0.0001365	460.227940824673	25.5	0.95162	25.466	25.201	26.152	-0.034395					56	22	4	0	0	0	0.03666	1	1193	1193		136.27	34.667	1	1859100			75234	3098	52448	52536	82711	82711					-0.021808703842907562
SPRGSTDSL	9	Unmodified	_SPRGSTDSL_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	460.227613	918.440674	-0.51123	-0.00023528	2.9143	0.0013412	2.4031	0.001106	460.2277545217236	25.335	0.25832	25.109	24.931	25.19	-0.22683	-0.22411	0.0014499	NaN	136.27	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23768			75235	3098	52448	52536							-0.021808703842907562
SPRHSFNNL	9	Unmodified	_SPRHSFNNL_					0	0	0		ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2692260742188	2	536.270147	1070.52574	-1.7619	-0.00094485	1.2151	0.00065164	-0.54677	-0.00029321	536.2707303163928	29.513	0.87632	29.513	29.26	30.137	0					56	21	4	0	0	0	0.64897	1	1833	1833		49.536	1.5765	1	978250			75236	2608	52449	52537	82712	82712					-0.006700801278157087
SPRHSFNNL	9	Unmodified	_SPRHSFNNL_					0	0	0		ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2696533203125	2	536.270147	1070.52574	-1.0708	-0.00057423	0.74028	0.00039699	-0.33051	-0.00017724	536.2704030113207	29.192	0.82629	29.27	29.016	29.842	0.078344					54	20	4	0	0	0	0.43628	1	1730	1730		63.534	10.597	1	962410			75237	2608	52449	52537	82713	82713					-0.006700801278157087
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2575378417969	2	459.256174	916.497795	-1.0065	-0.00046223	1.7699	0.00081285	0.76346	0.00035062	459.2569023291572	29.327	0.53796	29.327	29.032	29.57	0					40	13	4	0	0	0	0.2101	2	1782	1782;1806		87.696	5.4559	1	5301600			75238	5130	52450	52538	82714;82715	82714					0.03620596892085359
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2561950683594	2	459.256174	916.497795	-0.43873	-0.00020149	1.2902	0.00059253	0.85147	0.00039104	459.25667705661095	29.305	0.57958	29.308	28.971	29.551	0.0031376					43	14	5	0	0	0	0.043667	3	1777	1766;1777;1789		131.03	26.285	1	5198500			75239	5130	52450	52538	82716;82717;82718	82717					0.03620596892085359
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2564392089844	2	459.256174	916.497795	0.14252	6.5451E-05	0.1976	9.075E-05	0.34012	0.0001562	459.2561942213754	29.033	0.54425	29.111	28.824	29.368	0.078346					38	13	4	0	0	0	0.067814	2	1698	1698;1710		122.18	8.665	1	5161100			75240	5130	52450	52538	82719;82720	82719					0.03620596892085359
SPRIPPSVL	9	Unmodified	_SPRIPPSVL_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2925109863281	2	483.292559	964.570566	0.90211	0.00043598	-0.85702	-0.00041419	0.045094	2.1794E-05	483.2920473992022	55.483	1.2657	55.483	54.908	56.174	0					85	35	4	0	0	0	0.31037	3	6123	6123;6135;6148		74.255	2.3776	1	6063500	+		75241	26511	52451	52539	82721;82722;82723	82721					0.08686350685513844
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7747802734375	2	518.774731	1035.53491	-0.67073	-0.00034796	0.51314	0.0002662	-0.15759	-8.1756E-05	518.7749112427612	42.949	0.90579	42.949	42.605	43.511	0					54	24	3	0	0	0	0.056725	2	3989	3989;4000		126.24	23.396	1	4239800			75242	8440	52452	52540	82724;82725	82724					0.018562684378593985
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MSMS	OPSCC_39_ClassI_Rep-2	2	518.7748413085938	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.142	1	43.003	42.503	43.503	-0.13929								0	0	0	0.018764	1	4001	4001		132.76	19.346	1				75243	8440	52452	52540	82726	82726					0.018562684378593985
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MSMS	OPSCC_39_ClassI_Rep-2	2	518.774658203125	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.213	1	43.074	42.574	43.574	-0.13929								0	0	0	0.036569	1	4013	4013		114.89	17.422	1				75244	8440	52452	52540	82727	82727					0.018562684378593985
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MSMS	OPSCC_39_ClassI_Rep-3	3	518.7749633789062	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.057	1	43.088	42.588	43.588	0.030827								0	0	0	0.018764	1	3949	3949		132.76	12.137	1				75245	8440	52452	52540	82728	82728					0.018562684378593985
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MSMS	OPSCC_39_ClassI_Rep-3	3	518.7748413085938	2	518.774731	1035.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.116	1	43.146	42.646	43.646	0.030827								0	0	0	0.023134	1	3959	3959		126.24	32.236	1				75246	8440	52452	52540	82729	82729					0.018562684378593985
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.774731	1035.53491	-0.21217	-0.00011007	-1.8267	-0.00094767	-2.0389	-0.0010577	518.774335621512	43.278	0.21875	43.041	42.917	43.136	-0.23736	0.045708	-0.0023599	NaN	126.24	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94549			75247	8440	52452	52540							0.018562684378593985
SPRKNQIVF	9	Unmodified	_SPRKNQIVF_					0	0	0		nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.81396484375	2	544.81419	1087.61383	-1.0625	-0.00057885	0.27463	0.00014962	-0.78784	-0.00042922	544.8143896259085	34.848	1.0544	34.848	34.515	35.57	0					62	27	4	0	0	0	0.17822	1	2619	2619		93.195	41.86	1	3618700			75248	18392	52453	52541	82730	82730					0.07352540462807156
SPRKNQIVF	9	Unmodified	_SPRKNQIVF_					0	0	0		nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.8140869140625	2	544.81419	1087.61383	-1.1133	-0.00060653	0.27283	0.00014864	-0.84045	-0.00045789	544.8143651426533	34.633	1.187	34.629	34.298	35.485	-0.0045624					68	30	4	0	0	0	0.32811	1	2576	2576		71.877	25.905	1	3438600			75249	18392	52453	52541	82731	82731					0.07352540462807156
SPRKNQIVF	9	Unmodified	_SPRKNQIVF_					0	0	0		nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.8139038085938	2	544.81419	1087.61383	-1.4434	-0.00078638	0.70768	0.00038556	-0.73571	-0.00040082	544.8145858989693	34.648	1.177	34.698	34.404	35.581	0.050255					71	30	4	0	0	0	0.14024	2	2538	2538;2549		101.6	40.629	1	3554700			75250	18392	52453	52541	82732;82733	82732					0.07352540462807156
SPRLAAQKL	9	Unmodified	_SPRLAAQKL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.30322265625	2	492.303458	982.592364	-0.17372	-8.5524E-05	-0.40597	-0.00019986	-0.57969	-0.00028538	492.303222176831	31.927	0.63148	31.927	31.63	32.262	0					41	15	3	0	0	0	0.086035	3	2161	2161;2173;2187		115.49	36.043	1	4425600			75251	3658	52454	52542	82734;82735;82736	82734					0.10037155434076794
SPRLAAQKL	9	Unmodified	_SPRLAAQKL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.30340576171875	2	492.303458	982.592364	-0.33989	-0.00016733	-0.25456	-0.00012532	-0.59445	-0.00029265	492.303312186933	31.816	0.67619	31.828	31.545	32.221	0.011799					40	16	3	0	0	0	0.26413	1	2132	2132		80.455	8.5771	1	4103800			75252	3658	52454	52542	82737	82737					0.10037155434076794
SPRLAAQKL	9	Unmodified	_SPRLAAQKL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.30340576171875	2	492.303458	982.592364	-0.45842	-0.00022568	-0.13406	-6.5999E-05	-0.59248	-0.00029168	492.3033478430486	31.622	0.80271	31.691	31.366	32.169	0.068962					46	19	3	0	0	0	0.062622	2	2080	2070;2080		124.08	30.885	1	3965000			75253	3658	52454	52542	82738;82739	82739					0.10037155434076794
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2644348144531	2	465.263802	928.513051	0.094171	4.3814E-05	0.29221	0.00013595	0.38638	0.00017977	465.26420994809365	58.322	0.91358	58.322	57.91	58.823	0					85	24	5	0	0	0	0.082191	8	6568	6568;6577;6589;6601;6613;6625;6637;6664		116.9	53.597	1	25177000			75254	6362	52455	52543	82740;82741;82742;82743;82744;82745;82746;82747	82740					0.045935084799680226
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.26739501953125	2	465.263802	928.513051	0.40013	0.00018617	-2.299	-0.0010696	-1.8988	-0.00088345	465.26238589246	58.708	0.43174	58.708	58.568	58.999	0					18	11	2	0	0	0	0.023454	1	6651	6651		44.377	12.847	1	326290			75255	6362	52455	52543	82748	82748					0.045935084799680226
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.264404296875	2	465.263802	928.513051	-0.091174	-4.242E-05	0.57129	0.0002658	0.48012	0.00022338	465.26430343527863	58.52	0.94612	58.333	57.955	58.902	-0.18705					74	25	5	0	0	0	0.091713	8	6604	6582;6592;6604;6616;6628;6641;6653;6666		113.41	57.907	1	25506000			75256	6362	52455	52543	82749;82750;82751;82752;82753;82754;82755;82756	82751					0.045935084799680226
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.26434326171875	2	465.263802	928.513051	0.6445	0.00029986	-0.16395	-7.6282E-05	0.48055	0.00022358	465.26401364326546	58.15	0.98288	58.241	57.872	58.855	0.091217					78	26	5	0	0	0	0.091713	8	6478	6468;6478;6488;6500;6512;6524;6538;6550		113.41	49.204	1	26869000			75257	6362	52455	52543	82757;82758;82759;82760;82761;82762;82763;82764	82758					0.045935084799680226
SPRPPAEGF	9	Unmodified	_SPRPPAEGF_					0	0	0		ENSG00000156858|ENST00000300835|PRR14;ENST00000564946.5_1_16:30664247-30666731:+|nuORF	ENSG00000156858|ENST00000300835|PRR14	ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.24365234375	2	479.243067	956.47158	0.71314	0.00034177	-0.60151	-0.00028827	0.11163	5.3499E-05	479.24266749056704	40.329	1.1009	40.329	39.843	40.944	0					70	30	3	0	0	0	0.15366	1	3551	3551		98.629	16.389	1	3159800			75258	6553	52456	52544	82765	82765					-0.008396722793804656
SPRPPIRQWR	10	Unmodified	_SPRPPIRQWR_					0	0	0		ENSG00000156858|ENST00000300835|PRR14;ENST00000564946.5_1_16:30664247-30666731:+|nuORF;ENST00000567322.1_1_16:30665560-30666759:+|nuORF	ENSG00000156858|ENST00000300835|PRR14	ENSG00000156858|ENST00000300835|PRR14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	431.5512390136719	3	431.582667	1291.72617	-0.84507	-0.00036472	-3.0955	-0.001336	-3.9406	-0.0017007	431.58162004748846	36.269	0.17897	36.226	36.101	36.28	-0.042454					6	4	2	0	0	0	0.03519	1	2851	2851		43.651	20.869	1	25621			75259	6553	52457	52545	82766	82766					0.09197814259664483
SPRPPLGSSL	10	Unmodified	_SPRPPLGSSL_					0	0	0		nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000538503.5_1_12:121881458-121882696:-|nuORF	nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENST00000538503.5_1_12:121881458-121882696:-|nuORF	nc|ENSG00000089094|Q8NHM5-2|KDM2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.78826904296875	2	505.785099	1009.55564	-0.077163	-3.9028E-05	-0.47164	-0.00023855	-0.54881	-0.00027758	505.7848385300741	46.753	0.98142	46.753	46.199	47.181	0					63	26	3	0	0	0	0.47249	1	4652	4652		91.265	6.1044	1	3425700			75260	1893;16390	52458	52546	82767	82767					0.051248588175326404
SPRPPLGSSL	10	Unmodified	_SPRPPLGSSL_					0	0	0		nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000538503.5_1_12:121881458-121882696:-|nuORF	nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENST00000538503.5_1_12:121881458-121882696:-|nuORF	nc|ENSG00000089094|Q8NHM5-2|KDM2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.788330078125	2	505.785099	1009.55564	-0.14465	-7.316E-05	-0.18059	-9.1338E-05	-0.32523	-0.0001645	505.78497510463535	46.724	1.2737	46.776	45.932	47.206	0.051395					82	35	4	0	0	0	0.37509	1	4590	4590		101.25	23.935	1	3305200			75261	1893;16390	52458	52546	82768	82768					0.051248588175326404
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2928161621094	2	483.292559	964.570566	0.90211	0.00043598	-0.85702	-0.00041419	0.045094	2.1794E-05	483.2920473992022	55.483	1.2657	55.483	54.908	56.174	0					85	35	4	0	0	0	0.22902	1	6113	6113		85.161	23.053	1	6063500			75262	1164	52459	52547	82769	82769					0.08686350685525213
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.29278564453125	2	483.292559	964.570566	-0.11642	-5.6266E-05	0.12308	5.9482E-05	0.0066554	3.2165E-06	483.2925063510129	55.563	1.3212	55.407	54.852	56.173	-0.15601					96	36	4	0	0	0	0.26966	3	6116	6105;6116;6128		79.713	10.906	1	5421800			75263	1164	52459	52547	82770;82771;82772	82771					0.08686350685525213
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.29266357421875	2	483.292559	964.570566	-1.2087	-0.00058414	1.3014	0.00062898	0.092776	4.4838E-05	483.2930714611847	55.29	1.221	55.388	54.881	56.102	0.098015					86	33	4	0	0	0	0.19099	4	6036	6014;6024;6036;6047		90.37	21.583	1	5608300			75264	1164	52459	52547	82773;82774;82775;82776	82775					0.08686350685525213
SPRPTGSDL	9	Unmodified	_SPRPTGSDL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2378234863281	2	465.237981	928.461409	-1.4148	-0.00065821	0.7717	0.00035902	-0.64309	-0.00029919	465.2384514097166	30.12	1.6955	30.12	29.814	31.509	0					74	40	5	0	0	0	0.012922	5	1913	1890;1902;1913;1925;1939		172.25	76.058	1	17091000			75265	5750	52460	52548	82777;82778;82779;82780;82781	82779					-0.005682800046201919
SPRPTGSDL	9	Unmodified	_SPRPTGSDL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.23773193359375	2	465.237981	928.461409	-0.47186	-0.00021953	-0.08305	-3.8638E-05	-0.55491	-0.00025816	465.23805287395584	30.094	1.9032	30.102	29.757	31.66	0.0086708					81	45	6	0	0	0	0.013924	4	1885	1873;1885;1897;1909		167.23	67.854	1	17997000			75266	5750	52460	52548	82782;82783;82784;82785	82783					-0.005682800046201919
SPRPTGSDL	9	Unmodified	_SPRPTGSDL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2380065917969	2	465.237981	928.461409	-0.27231	-0.00012669	-0.69584	-0.00032373	-0.96815	-0.00045042	465.23793749581927	29.732	1.5218	29.81	29.527	31.049	0.078346					107	36	4	0	0	0	0.013065	4	1798	1787;1798;1810;1822		180.87	77.525	1	17927000			75267	5750	52460	52548	82786;82787;82788;82789	82787					-0.005682800046201919
SPRPTGSDL	9	Unmodified	_SPRPTGSDL_					0	0	0		ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENST00000475396.5_1_2:220462865-220474366:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.237981	928.461409	-0.3583	-0.00016669	4.8282	0.0022463	4.4699	0.0020796	465.23951392872954	29.934	0.29391	29.69	29.568	29.862	-0.24415	-0.24047	0.0041917	NaN	172.25	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43965			75268	5750	52460	52548							-0.005682800046201919
SPRQAKPAVL	10	Unmodified	_SPRQAKPAVL_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8056030273438	2	533.822015	1065.62948	-1.1683	-0.00062367	3.441	0.0018369	2.2727	0.0012132	533.8243224217337	45.045	0.38231	44.896	44.697	45.079	-0.1488					15	10	2	0	0	0	0.03519	1	4306	4306		56.434	17.181	1	425380	+		75269	20637	52461	52549	82790	82790					0.09928826979853511
SPRQGNSKNVL	11	Unmodified	_SPRQGNSKNVL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.5537109375	3	400.554554	1198.64183	0.94475	0.00037842	-0.8965	-0.0003591	0.048247	1.9326E-05	400.554082801843	22.781	0.69141	22.781	22.432	23.123	0					42	14	4	0	0	0	0.97559	1	825	825		42.243	3.489	1	477430			75270	4197	52462	52550	82791	82791					0.050458186522291726
SPRQGNSKNVL	11	Unmodified	_SPRQGNSKNVL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	400.554554	1198.64183	0.2815	0.00011276	-0.31872	-0.00012767	-0.037226	-1.4911E-05	400.55437326119124	22.809	0.54861	22.734	22.506	23.054	-0.075294	-0.013554	0.00094258	NaN	42.243	34	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523360			75271	4197	52462	52550							0.050458186522291726
SPRQGNSKNVL	11	Unmodified	_SPRQGNSKNVL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	400.554554	1198.64183	1.9463	0.00077961	-1.9432	-0.00077836	0.0031166	1.2484E-06	400.5536929924001	22.654	0.61066	22.728	22.413	23.024	0.073954	-0.019632	-0.0010095	NaN	42.243	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547220			75272	4197	52462	52550							0.050458186522291726
SPRRPGPG	8	Unmodified	_SPRRPGPG_					0	0	0			REV__ENSG00000188522|ENST00000388995|FAM83G	REV__ENSG00000188522|ENST00000388995|FAM83G	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.23052978515625	2	412.230294	822.446034	0.38571	0.000159	0.30645	0.00012633	0.69216	0.00028533	412.23037967870096	27.434	2.0819	27.434	26.531	28.613	0					138	52	4	0	0	0	1.0338	1	1532	1532		31.955	0	1	8114200	+		75273	28042	52463	52551	82792	82792					0.027708979888643626
SPRRPGPG	8	Unmodified	_SPRRPGPG_					0	0	0			REV__ENSG00000188522|ENST00000388995|FAM83G	REV__ENSG00000188522|ENST00000388995|FAM83G	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.2308044433594	2	412.230294	822.446034	-0.48948	-0.00020178	1.1872	0.00048941	0.69775	0.00028763	412.23071113677236	27.154	2.5776	27.235	26.249	28.827	0.081293					138	64	4	0	0	0	1.0338	1	1415	1415		31.955	0	1	8910500	+		75274	28042	52463	52551	82793	82793					0.027708979888643626
SPRRQIQVDL	10	Unmodified	_SPRRQIQVDL_					0	0	0			REV__ENSG00000124491|ENST00000264870|F13A1	REV__ENSG00000124491|ENST00000264870|F13A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.7378845214844	3	404.566683	1210.67822	-0.25644	-0.00010375	0.3402	0.00013763	0.083759	3.3886E-05	404.56684737698527	36.353	0.80684	36.31	35.963	36.77	-0.042454					34	21	2	0	0	0	0.03519	1	2831	2831		19.263	5.1767	1	1145500	+		75275	22767	52464	52552	82794	82794					0.08130695548948097
SPRRRAWLLS	10	Unmodified	_SPRRRAWLLS_					0	0	0			REV__ENST00000490681.1_1_3:52566230-52566458:-|nuORF	REV__ENST00000490681.1_1_3:52566230-52566458:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2122497558594	3	414.579034	1240.71527	-0.085921	-3.5621E-05	1.1713	0.00048559	1.0854	0.00044997	414.5793671170565	28.118	0.40814	28.114	27.966	28.374	-0.0042019					13	9	2	0	0	0	0.03519	1	1599	1599		22.58	1.7425	1	35134	+		75276	33707	52465	52553	82795	82795					0.10454411885370973
SPRSITSTP	9	Unmodified	_SPRSITSTP_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;nc|ENSG00000039560|Q9P0K7-4|RAI14;RAI14|p.E674Dfs*10|1|0.25|ENSG00000039560|chr5:34823860-34823891|CTGAATATATCCATAAAGCAGAGCATGAGAAA/-|frameshift_variant	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2535400390625	2	473.253631	944.49271	-0.47873	-0.00022656	0.3415	0.00016162	-0.13723	-6.4946E-05	473.25372115673474	30.216	1.042	30.29	30.045	31.087	0.074314					54	24	3	0	0	0	0.12914	1	1890	1890		104.06	13.687	1	3721600			75277	1063	52466	52554	82796	82796					0.018242930294718462
SPRSITSTP	9	Unmodified	_SPRSITSTP_					0	0	0		nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14;nc|ENSG00000039560|Q9P0K7-4|RAI14;RAI14|p.E674Dfs*10|1|0.25|ENSG00000039560|chr5:34823860-34823891|CTGAATATATCCATAAAGCAGAGCATGAGAAA/-|frameshift_variant	nc|ENSG00000039560|Q9P0K7-3|RAI14	nc|ENSG00000039560|Q9P0K7-3|RAI14	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	473.253631	944.49271	-0.4263	-0.00020175	0.25935	0.00012274	-0.16694	-7.9007E-05	473.2536857845434	30.598	0.99996	30.598	30.3	31.3	0	0.11527	3.7778E-05	NaN	104.06	66	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3587400			75278	1063	52466	52554							0.018242930294718462
SPRSLLVLLQ	10	Unmodified	_SPRSLLVLLQ_					0	0	0		ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3533325195312	2	563.353148	1124.69174	1.246	0.00070197	-0.74497	-0.00041968	0.50108	0.00028228	563.3523933939094	74.151	2.52	74.151	73.871	76.391	0					120	63	3	0	0	0	0.54106	1	9070	9070		83.647	26.926	1	5884400			75279	1123	52467	52555	82797	82797					0.1343855332820567
SPRSLLVLLQ	10	Unmodified	_SPRSLLVLLQ_					0	0	0		ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	ENSG00000049089|ENST00000372748|COL9A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.3529052734375	2	563.353148	1124.69174	-0.95285	-0.00053679	1.378	0.00077628	0.42511	0.00023949	563.3536482784735	74.197	2.2656	74.207	73.558	75.823	0.0096512					110	56	3	0	0	0	0.60734	2	9018	8994;9018		76.17	4.2922	1	5676000			75280	1123	52467	52555	82798;82799	82799					0.1343855332820567
SPRSPSPSL	9	Unmodified	_SPRSPSPSL_					0	0	0		ENST00000592087.1_1_19:36981361-36981412:+|nuORF;chr5:76812310-76832690|378|16.73|0.13|7.01|+|1|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812310|None,F2RL1|1;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|1|1|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|16|2|sense;chr15:39807258-39894532|137|21.23|0.0|15.12|-|1|TE_info:SVA_F,SVA_F_dup763,SVA,Retroposon,donor,-,39894532,39895275|GPR176,None|1;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|26|3|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|29|3|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|1|1|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|34|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|1|1|sense;chr5:76812387-76832690|376|11.08|0.11|6.64|+|2|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812387|None,F2RL1|1;chr2:38750194-38756111|187|65.66|0.09|9.55|-|2|TE_info:SVA_D,SVA_D_dup166,SVA,Retroposon,donor,-,38756111,38756756|SRSF7,None|1;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|32|3|sense;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|32|3|sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|1|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|13|2|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|34|3|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|33|3|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|1|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|15|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|31|3|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|30|3|sense;chr1:152114111-152144990|142|23.89|0.08|8.2|-|1|TE_info:SVA_C,SVA_C_dup24,SVA,Retroposon,donor,-,152144990,152145699|TCHH,None|1	ENST00000592087.1_1_19:36981361-36981412:+|nuORF	ENST00000592087.1_1_19:36981361-36981412:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2480773925781	2	464.248349	926.482145	-0.70982	-0.00032953	0.27939	0.00012971	-0.43043	-0.00019982	464.2482904642857	33.293	1.48	33.293	32.531	34.011	0					72	39	3	0	0	0	0.094442	1	2395	2395		112.41	11.158	1	3460100			75281	272	52468	52556	82800	82800					0.015963103750550545
SPRSPSPSL	9	Unmodified	_SPRSPSPSL_					0	0	0		ENST00000592087.1_1_19:36981361-36981412:+|nuORF;chr5:76812310-76832690|378|16.73|0.13|7.01|+|1|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812310|None,F2RL1|1;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|1|1|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|16|2|sense;chr15:39807258-39894532|137|21.23|0.0|15.12|-|1|TE_info:SVA_F,SVA_F_dup763,SVA,Retroposon,donor,-,39894532,39895275|GPR176,None|1;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|26|3|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|29|3|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|1|1|sense;SVA_D_dup192|chr2:85487025-85489063:+|2.617044019268356|0.0555173296189814|5.56|510.0|34|3|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|1|1|sense;chr5:76812387-76832690|376|11.08|0.11|6.64|+|2|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812387|None,F2RL1|1;chr2:38750194-38756111|187|65.66|0.09|9.55|-|2|TE_info:SVA_D,SVA_D_dup166,SVA,Retroposon,donor,-,38756111,38756756|SRSF7,None|1;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|32|3|sense;SVA_D_dup973|chr12:56782661-56784730:-|3.0667967805754985|0.4311370486865062|2.83|517.0|32|3|sense;SVA_D_dup975|chr12:56962813-56964316:+|1.97386523789448|0.1106673196328791|4.16|519.0|1|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|13|2|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|34|3|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|33|3|sense;SVA_D_dup484|chr5:149669531-149671441:-|1.9366293371242609|0.0840349291209592|4.53|513.0|1|1|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|15|2|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|31|3|sense;SVA_D_dup967|chr12:49860209-49862000:+|1.586921840710263|0.0876341637570898|4.18|519.0|30|3|sense;chr1:152114111-152144990|142|23.89|0.08|8.2|-|1|TE_info:SVA_C,SVA_C_dup24,SVA,Retroposon,donor,-,152144990,152145699|TCHH,None|1	ENST00000592087.1_1_19:36981361-36981412:+|nuORF	ENST00000592087.1_1_19:36981361-36981412:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2479248046875	2	464.248349	926.482145	1.0428	0.00048413	-1.7547	-0.00081461	-0.71185	-0.00033047	464.247411451155	33.032	1.604	33.089	32.533	34.137	0.056572					78	41	3	0	0	0	0.094442	2	2281	2281;2304		112.41	8.3541	1	3384300			75282	272	52468	52556	82801;82802	82801					0.015963103750550545
SPRSPSTTYL	10	Unmodified	_SPRSPSTTYL_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	554.7850952148438	2	554.785296	1107.55604	0.20451	0.00011346	-0.48434	-0.0002687	-0.27983	-0.00015525	554.7849573287256	41.032	0.99486	41.032	40.657	41.652	0					50	27	2	0	0	0	0.29487	3	3658	3658;3670;3683		109.48	27.173	1	4878100			75283	7718	52469	52557	82803;82804;82805	82803					0.006562337466903045
SPRSPSTTYL	10	Unmodified	_SPRSPSTTYL_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.784912109375	2	554.785296	1107.55604	0.060951	3.3815E-05	-0.17087	-9.4795E-05	-0.10992	-6.098E-05	554.7851224582766	41.179	0.95869	41.056	40.653	41.612	-0.12317					50	26	2	0	0	0	0.37509	2	3663	3663;3675		101.25	19.012	1	4631800			75284	7718	52469	52557	82806;82807	82806					0.006562337466903045
SPRSPSTTYL	10	Unmodified	_SPRSPSTTYL_					0	0	0		ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	ENSG00000167670|ENST00000301280|CHAF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	554.7852783203125	2	554.785296	1107.55604	-0.011253	-6.243E-06	-0.13863	-7.6911E-05	-0.14989	-8.3154E-05	554.7851698558104	41.19	0.91654	41.213	40.864	41.781	0.023003					46	25	2	0	0	0	0.37509	2	3629	3629;3642		101.25	16.346	1	4347500			75285	7718	52469	52557	82808;82809	82808					0.006562337466903045
SPRSSLNNSL	10	Unmodified	_SPRSSLNNSL_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.780517578125	2	537.780544	1073.54654	-1.2456	-0.00066985	-3.986	-0.0021436	-5.2316	-0.0028134	537.7808889503812	35.517	0.99532	35.517	35.2	36.195	0					58	26	3	0	0	0	0.1587	1	2726	2726		126.24	19.362	1	11431000			75286	10209	52470	52558	82810	82810					0.012704654611980004
SPRSSLNNSL	10	Unmodified	_SPRSSLNNSL_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MSMS	OPSCC_39_ClassI_Rep-3	3	537.7801513671875	2	537.780544	1073.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.266	1	35.31	34.81	35.81	0.04406								0	0	0	0.16904	1	2647	2647		98.582	11.7	1				75287	10209	52470	52558	82811	82811					0.012704654611980004
SPRSSLNNSL	10	Unmodified	_SPRSSLNNSL_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3;nc|ENSG00000198815|Q9UPW0-2|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MSMS	OPSCC_39_ClassI_Rep-3	3	537.7804565429688	2	537.780544	1073.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.332	1	35.376	34.876	35.876	0.04406								0	0	0	0.18723	1	2657	2657		93.598	5.8433	1				75288	10209	52470	52558	82812	82812					0.012704654611980004
SPRTELVLV	9	Unmodified	_SPRTELVLV_					0	0	0		CON__Q9TTE1;CON__A2I7N0	CON__Q9TTE1	CON__Q9TTE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3155517578125	2	507.303124	1012.5917	-0.10519	-5.3364E-05	-3.2747	-0.0016613	-3.3799	-0.0017147	507.30139850213993	68.903	0.10719	68.919	68.83	68.937	0.015129					4	2	2	0	0	0	0.024523	1	8195	8195		21.96	0	1	337300		+	75289	575	52471	52559	82813	82813					0.0859031599438822
SPRTESQSL	9	Unmodified	_SPRTESQSL_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000413704.5_1_3:9487316-9517772:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.75421142578125	2	502.753995	1003.49344	-0.56375	-0.00028343	1.0361	0.00052092	0.47239	0.00023749	502.7544141203703	26.286	1.1031	26.263	25.954	27.057	-0.023088					58	26	5	0	0	0	0.071379	2	1318	1305;1318		120.87	13.861	1	2638100			75290	18490	52472	52560	82814;82815	82815					-0.008169123214543106
SPRTESQSL	9	Unmodified	_SPRTESQSL_					0	0	0		nc|ENSG00000168137|Q9C0A6-3|SETD5;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000413704.5_1_3:9487316-9517772:+|nuORF	nc|ENSG00000168137|Q9C0A6-3|SETD5	nc|ENSG00000168137|Q9C0A6-3|SETD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7542419433594	2	502.753995	1003.49344	0.20986	0.00010551	0.255	0.0001282	0.46485	0.00023371	502.7540436629749	25.961	0.83652	26.041	25.749	26.585	0.08009					40	19	3	0	0	0	0.12914	1	1223	1223		104.06	1.2834	1	2457500			75291	18490	52472	52560	82816	82816					-0.008169123214543106
SPRTPPFRKR	10	Unmodified	_SPRTPPFRKR_					0	0	0			REV__ENST00000340181.8_1_6:36355390-36355519:-|nuORF	REV__ENST00000340181.8_1_6:36355390-36355519:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2126159667969	3	414.579034	1240.71527	-0.041006	-1.7E-05	-0.072066	-2.9877E-05	-0.11307	-4.6877E-05	414.5790342388719	28.204	0.49091	28.204	27.999	28.49	0					21	11	3	0	0	0	0.03519	1	1595	1595		20.03	8.9337	1	74536	+		75292	30613	52473	52561	82817	82817					0.10454411885348236
SPRTSGVL	8	Unmodified	_SPRTSGVL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	408.73211669921875	2	408.732335	815.450116	0.11997	4.9035E-05	-0.21758	-8.8932E-05	-0.09761	-3.9897E-05	408.73223273858844	31.068	0.874	31.068	30.717	31.591	0					53	20	3	0	0	0	0.42912	3	2034	2034;2045;2057		93.195	13.744	1	6170500			75293	1594	52474	52562	82818;82819;82820	82818					0.03500942691914588
SPRTSGVL	8	Unmodified	_SPRTSGVL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	408.7323303222656	2	408.732335	815.450116	0.16151	6.6013E-05	-0.29055	-0.00011876	-0.12904	-5.2742E-05	408.7321842422411	31.009	1.2475	31.021	30.376	31.624	0.011797					61	29	3	0	0	0	0.53593	5	2049	2003;2012;2023;2036;2049		82.241	10.945	1	6177900			75294	1594	52474	52562	82821;82822;82823;82824;82825	82825					0.03500942691914588
SPRTSGVL	8	Unmodified	_SPRTSGVL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	408.7325134277344	2	408.732335	815.450116	0.66212	0.00027063	-0.67982	-0.00027786	-0.017694	-7.2323E-06	408.7320282060333	30.696	0.91286	30.77	30.42	31.333	0.074314					54	21	3	0	0	0	0.41021	4	1948	1927;1937;1948;1960		95.815	10.89	1	6246600			75295	1594	52474	52562	82826;82827;82828;82829	82828					0.03500942691914588
SPRTSTESF	9	Unmodified	_SPRTSTESF_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.240234375	2	506.240721	1010.46689	-1.3247	-0.00067061	1.2175	0.00061632	-0.10724	-5.4287E-05	506.24118629502084	30.598	0.61955	30.598	30.3	30.92	0					40	14	4	0	0	0	0.14024	1	1977	1977		101.6	30.305	1	1106000			75296	9932	52475	52563	82830	82830					-0.03792601212808222
SPRTSTESF	9	Unmodified	_SPRTSTESF_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.24029541015625	2	506.240721	1010.46689	-0.5845	-0.0002959	0.37335	0.00018901	-0.21115	-0.00010689	506.2407830791333	30.508	0.57952	30.517	30.289	30.868	0.0086708					40	13	4	0	0	0	0.14024	1	1955	1955		101.6	19.296	1	1050100			75297	9932	52475	52563	82831	82831					-0.03792601212808222
SPRTSTESF	9	Unmodified	_SPRTSTESF_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.2403869628906	2	506.240721	1010.46689	-0.9428	-0.00047728	0.49783	0.00025202	-0.44498	-0.00022527	506.24080210225753	30.159	1.2209	30.233	29.406	30.626	0.074316					67	29	4	0	0	0	0.26966	1	1868	1868		79.713	8.4169	1	1014600			75298	9932	52475	52563	82832	82832					-0.03792601212808222
SPRVILSIL	9	Unmodified	_SPRVILSIL_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.3236999511719	2	499.32386	996.633166	-0.46163	-0.0002305	0.61573	0.00030745	0.1541	7.6947E-05	499.3241339802227	76.169	1.1743	75.94	75.598	76.772	-0.22843					71	29	4	0	0	0	0.5973	1	9333	9333		52.937	1.744	1	6298600			75299	6870	52476	52564	82833	82833					0.13471496753720658
SPRVKEGKEDV	11	Unmodified	_SPRVKEGKEDV_					0	0	0			REV__nc|ENSG00000161813|Q71RC2-7|LARP4	REV__nc|ENSG00000161813|Q71RC2-7|LARP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2121887207031	3	415.226215	1242.65681	-0.58155	-0.00024148	-3.7785	-0.0015689	-4.3601	-0.0018104	415.2233532462943	29.413	0.67435	29.492	29.128	29.802	0.078344					31	16	3	0	0	0	0.024757	1	1709	1709		38.714	23.381	1	115340	+		75300	25401	52477	52565	82834	82834					0.04519265729572908
SPRVPASET	9	Unmodified	_SPRVPASET_					0	0	0		ENSG00000213523|ENST00000336283|SRA1;ENST00000523259.5_1_5:139931458-139936810:-|nuORF	ENSG00000213523|ENST00000336283|SRA1	ENSG00000213523|ENST00000336283|SRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.24542236328125	2	472.245806	942.47706	-0.25128	-0.00011867	0.19878	9.3872E-05	-0.052503	-2.4794E-05	472.24575306214354	27.641	0.63141	27.722	27.319	27.951	0.081293					46	16	4	0	0	0	0.49102	1	1490	1490		59.931	2.1195	1	1354800			75301	10508	52478	52566	82835	82835					0.003520065124348548
SPRVPASET	9	Unmodified	_SPRVPASET_					0	0	0		ENSG00000213523|ENST00000336283|SRA1;ENST00000523259.5_1_5:139931458-139936810:-|nuORF	ENSG00000213523|ENST00000336283|SRA1	ENSG00000213523|ENST00000336283|SRA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.245806	942.47706	-0.13683	-6.4618E-05	0.12007	5.6705E-05	-0.016757	-7.9134E-06	472.2457412263309	28.004	0.65862	28.004	27.616	28.274	0	0.10419	1.6549E-05	NaN	59.931	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487600			75302	10508	52478	52566							0.003520065124348548
SPRVPASET	9	Unmodified	_SPRVPASET_					0	0	0		ENSG00000213523|ENST00000336283|SRA1;ENST00000523259.5_1_5:139931458-139936810:-|nuORF	ENSG00000213523|ENST00000336283|SRA1	ENSG00000213523|ENST00000336283|SRA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.245806	942.47706	-0.030463	-1.4386E-05	-0.39799	-0.00018795	-0.42846	-0.00020234	472.2453558495989	27.978	0.83541	27.974	27.581	28.416	-0.0042019	0.073728	-0.00047276	NaN	59.931	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1500600			75303	10508	52478	52566							0.003520065124348548
SPRVPNSSV	9	Unmodified	_SPRVPNSSV_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.7540283203125	2	471.753798	941.493044	0.00047092	2.2216E-07	-0.27307	-0.00012882	-0.2726	-0.0001286	471.7536349618114	32.438	1.1902	32.438	31.789	32.979	0					48	30	2	0	0	0	0.14087	3	2234	2234;2244;2257		101.46	16.823	1	6504900			75304	186	52479	52567	82836;82837;82838	82836					0.01995712749339873
SPRVPNSSV	9	Unmodified	_SPRVPNSSV_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.7538757324219	2	471.753798	941.493044	-0.077717	-3.6663E-05	-0.28196	-0.00013301	-0.35967	-0.00016968	471.7536329088268	32.345	1.2295	32.357	31.663	32.893	0.011799					49	31	2	0	0	0	0.087669	3	2206	2206;2216;2229		114.89	35.444	1	6105300			75305	186	52479	52567	82839;82840;82841	82839					0.01995712749339873
SPRVPNSSV	9	Unmodified	_SPRVPNSSV_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7541809082031	2	471.753798	941.493044	0.089316	4.2135E-05	-0.30591	-0.00014431	-0.21659	-0.00010218	471.75361375251094	32.13	1.2069	32.193	31.521	32.728	0.062885					49	30	2	0	0	0	0.14181	2	2146	2137;2146		101.25	23.935	1	5558100			75306	186	52479	52567	82842;82843	82843					0.01995712749339873
SPRVPSIEL	9	Unmodified	_SPRVPSIEL_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.2877502441406	2	499.287474	996.560395	1.2837	0.00064095	-1.4252	-0.00071158	-0.14144	-7.0621E-05	499.2866056689375	59.502	1.0729	59.502	59.108	60.181	0					41	28	2	0	0	0	0.57016	1	6809	6809		54.722	10.606	1	2538200			75307	3352	52480	52568	82844	82844					0.061977429602734446
SPRVPSIEL	9	Unmodified	_SPRVPSIEL_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.28741455078125	2	499.287474	996.560395	0.29882	0.0001492	-0.39537	-0.0001974	-0.09655	-4.8206E-05	499.2871298220018	59.745	1.0735	59.545	59.136	60.209	-0.20016					40	28	2	0	0	0	0.12914	1	6812	6812		104.06	24.118	1	2300500			75308	3352	52480	52568	82845	82845					0.061977429602734446
SPRVPSIEL	9	Unmodified	_SPRVPSIEL_					0	0	0		nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.287474	996.560395	0.18439	9.2063E-05	-0.31007	-0.00015481	-0.12568	-6.2751E-05	499.2871877248735	59.386	1.0371	59.472	59.134	60.171	0.085686	-0.034247	0.00041008	NaN	104.06	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2278800			75309	3352	52480	52568							0.061977429602734446
SPRVQFQSL	9	Unmodified	_SPRVQFQSL_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;nc|ENSG00000197343|Q8N720-2|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2904052734375	2	531.290548	1060.56654	-0.31935	-0.00016967	0.026878	1.428E-05	-0.29248	-0.00015539	531.2903051623847	51.162	0.58563	51.162	50.845	51.431	0					46	15	4	0	0	0	0.28047	1	5398	5398		78.264	18.146	1	6257600			75310	9984	52481	52569	82846	82846					0.03868261191814781
SPRVQFQSL	9	Unmodified	_SPRVQFQSL_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;nc|ENSG00000197343|Q8N720-2|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.2907104492188	2	531.290548	1060.56654	-0.80187	-0.00042602	0.28992	0.00015403	-0.51195	-0.00027199	531.2904492368275	51.36	0.50616	51.211	50.933	51.439	-0.14916					45	13	4	0	0	0	0.6187	1	5402	5402		51.528	0.1923	1	5790000			75311	9984	52481	52569	82847	82847					0.03868261191814781
SPRVVSTSL	9	Unmodified	_SPRVVSTSL_					0	0	0		ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant;ENSG00000124198|ENST00000371917|ARFGEF2	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	ARFGEF2|p.Y1121Lfs*24|1|0.38|ENSG00000124198|chr20:48998433-48998434|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.27197265625	2	473.271824	944.529095	0.41183	0.00019491	-0.50057	-0.00023691	-0.08874	-4.1998E-05	473.27147638337254	41.293	0.8491	41.316	41.005	41.854	0.023006					58	23	4	0	0	0	0.11727	1	3655	3655		106.68	3.9097	1	2855300			75312	116	52482	52570	82848	82848					0.05461169926195453
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_		SPRYIFTM(1)L		SPRYIFTM(120)L	0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.296630859375	2	572.296985	1142.57942	-1.8957	-0.0010849	1.3527	0.00077414	-0.54298	-0.00031074	572.2977118972292	64.926	1.6459	64.926	64.499	66.145	0					117	44	5	0	0	0	0.067814	5	7682	7644;7655;7667;7682;7694		122.18	40.533	1	14940000			75313	18271;1599	52483	52571	82849;82850;82851;82852;82853	82852		57			0.013829562596811229
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_		SPRYIFTM(1)L		SPRYIFTM(120)L	0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	572.2965087890625	2	572.296985	1142.57942	-1.233	-0.00070567	0.54748	0.00031332	-0.68557	-0.00039235	572.297277857428	65.194	1.738	64.931	64.493	66.231	-0.26275					139	46	6	0	0	0	0.062622	4	7656	7656;7667;7679;7693		124.08	41.84	1	14102000			75314	18271;1599	52483	52571	82854;82855;82856;82857	82854		57			0.013829562596811229
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_		SPRYIFTM(1)L		SPRYIFTM(140)L	0	0	1		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.297119140625	2	572.296985	1142.57942	-1.074	-0.00061462	0.49303	0.00028216	-0.58092	-0.00033246	572.2972625281665	64.876	1.6108	64.913	64.555	66.166	0.037376					97	43	3	0	0	0	0.03666	4	7561	7561;7572;7583;7597		136.27	44.629	1	14793000			75315	18271;1599	52483	52571	82858;82859;82860;82861	82858		57			0.013829562596811229
SPSAAGPGFPA	11	Unmodified	_SPSAAGPGFPA_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.29022216796875	2	479.735074	957.455596	-1.1848	-0.00056841	4.3286	0.0020766	3.1438	0.0015082	479.7370646877301	48.966	0.80593	49.041	48.772	49.578	0.074196					30	21	2	0	0	0	0.024759	1	4934	4934		26.693	0	1	392060			75316	6111	52484	52572	82862	82862					-0.024833785162854838
SPSALAKKSL	10	Unmodified	_SPSALAKKSL_					0	0	0			REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.82391357421875	2	501.303124	1000.5917	-0.35945	-0.00018019	-0.47939	-0.00024032	-0.83884	-0.00042052	501.30293099613203	41.943	0.69382	41.811	41.455	42.149	-0.1322					22	19	2	0	0	0	0.03519	1	3833	3833		34.173	11.13	1	398460	+		75317	29102	52485	52573	82863	82863					0.09142315994370165
SPSAMGKRL	9	Oxidation (M)	_SPSAM(Oxidation (M))GKRL_		SPSAM(1)GKRL		SPSAM(55)GKRL	0	0	1		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.7587890625	2	481.758027	961.5015	-0.28522	-0.00013741	1.9261	0.00092793	1.6409	0.00079052	481.75875160152214	21.876	0.89709	21.796	21.509	22.406	-0.080242					43	18	3	0	0	0	0.56934	1	711	711		54.776	10.245	1	590420			75318	2867	52486	52574	82864	82864		107			0.019209433943274234
SPSAMGKRL	9	Oxidation (M)	_SPSAM(Oxidation (M))GKRL_					0	0	1		ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	ENSG00000107929|ENST00000316157|LARP4B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	481.758027	961.5015	-0.94553	-0.00045551	2.4077	0.0011599	1.4622	0.00070441	481.75910556032204	21.749	1.1052	21.82	21.546	22.651	0.071487	-0.00062498	0.00026802	NaN	54.776	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613000			75319	2867	52486	52574				107			0.019209433943274234
SPSCVSLLVL	10	Unmodified	_SPSCVSLLVL_					0	0	0			REV__ENST00000286953.7_1_14:104378785-104378857:-|nuORF	REV__ENST00000286953.7_1_14:104378785-104378857:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.2840881347656	2	509.286085	1016.55762	-0.58778	-0.00029935	-3.0548	-0.0015558	-3.6426	-0.0018551	509.2845043531119	82.918	0.68777	82.918	82.535	83.223	0					30	15	3	0	0	0	0.82838	1	10356	10356		58.782	2.0609	1	1068300	+		75320	29921	52487	52575	82865	82865					0.050001515111148365
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.26129150390625	2	486.261456	970.50836	-0.10166	-4.9434E-05	-0.25003	-0.00012158	-0.35169	-0.00017101	486.26136804354024	46.291	0.90541	46.291	45.986	46.892	0					60	24	4	0	0	0	0.016542	5	4580	4546;4556;4568;4580;4593		154.12	55.489	1	11887000			75321	1009	52488	52576	82866;82867;82868;82869;82870	82869					0.021925795465335796
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.26165771484375	2	486.261456	970.50836	-1.1454	-0.00055699	0.9447	0.00045937	-0.20075	-9.7616E-05	486.2619266418097	46.378	1.1706	46.226	45.92	47.09	-0.15156					69	31	4	0	0	0	0.015752	6	4573	4539;4550;4561;4573;4586;4601		158.07	47.955	1	14173000			75322	1009	52488	52576	82871;82872;82873;82874;82875;82876	82874					0.021925795465335796
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2617492675781	2	486.261456	970.50836	-0.553	-0.0002689	0.35033	0.00017035	-0.20267	-9.855E-05	486.2616293761496	46.261	0.87444	46.312	45.998	46.873	0.051399					62	24	4	0	0	0	0.025498	5	4492	4482;4492;4506;4518;4532		145.16	49.34	1	13996000			75323	1009	52488	52576	82877;82878;82879;82880;82881	82878					0.021925795465335796
SPSGDRPAV	9	Unmodified	_SPSGDRPAV_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2249450683594	2	443.224874	884.435195	-0.49651	-0.00022006	0.72853	0.0003229	0.23202	0.00010284	443.2250120957454	26.616	0.95834	26.697	26.249	27.208	0.081293					64	23	5	0	0	0	0.22902	1	1320	1320		85.161	2.9203	1	1797000			75324	923	52489	52577	82882	82882					-0.011645491760873483
SPSGRESSL	9	Unmodified	_SPSGRESSL_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	460.2278137207031	2	460.227613	918.440674	-0.69693	-0.00032075	0.99352	0.00045725	0.29659	0.0001365	460.227940824673	25.5	0.95162	25.466	25.201	26.152	-0.034395					56	22	4	0	0	0	0.15029	1	1201	1201		99.375	1.9023	1	1859100	+		75325	24613	52490	52578	82883	82883					-0.021808703842907562
SPSGSKSVH	9	Unmodified	_SPSGSKSVH_					0	0	0			REV__MBL2|p.Q64Pfs*69|1|0.19|ENSG00000165471|chr10:52770759-52770783|GGGCCCTGTAAGCCTCTGAGCCCTT/-|frameshift_variant	REV__MBL2|p.Q64Pfs*69|1|0.19|ENSG00000165471|chr10:52770759-52770783|GGGCCCTGTAAGCCTCTGAGCCCTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2250061035156	2	443.224874	884.435195	-0.17707	-7.8484E-05	0.65173	0.00028887	0.47466	0.00021038	443.22497773034627	27.011	1.1918	27.011	26.243	27.435	0					67	29	4	0	0	0	0.45795	1	1431	1431		62.107	1.8135	1	1782700	+		75326	36357	52491	52579	82884	82884					-0.011645491760873483
SPSGSKSVH	9	Unmodified	_SPSGSKSVH_					0	0	0			REV__MBL2|p.Q64Pfs*69|1|0.19|ENSG00000165471|chr10:52770759-52770783|GGGCCCTGTAAGCCTCTGAGCCCTT/-|frameshift_variant	REV__MBL2|p.Q64Pfs*69|1|0.19|ENSG00000165471|chr10:52770759-52770783|GGGCCCTGTAAGCCTCTGAGCCCTT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.22503662109375	2	443.224874	884.435195	-0.49651	-0.00022006	0.72853	0.0003229	0.23202	0.00010284	443.2250120957454	26.616	0.95834	26.697	26.249	27.208	0.081293					64	23	5	0	0	0	0.2101	1	1332	1332		87.696	10.379	1	1797000	+		75327	36357	52491	52579	82885	82885					-0.011645491760873483
SPSHPAREN	9	Unmodified	_SPSHPAREN_					0	0	0		ENST00000476730.1_1_7:64349144-64349444:+|nuORF	ENST00000476730.1_1_7:64349144-64349444:+|nuORF	ENST00000476730.1_1_7:64349144-64349444:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2851867675781	2	497.73868	993.462806	-0.74263	-0.00036964	1.2346	0.0006145	0.49196	0.00024487	497.7394168155994	35.742	0.40562	35.537	35.346	35.752	-0.20518					14	10	2	0	0	0	0.024261	1	2738	2738		37.812	0	1	219950			75328	15095	52492	52580	82886	82886					-0.03418645915860452
SPSHRTVAVI	10	Unmodified	_SPSHRTVAVI_					0	0	0			REV__nc|ENSG00000162688|P35573-2|AGL	REV__nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8048095703125	2	533.803823	1065.59309	-1.1538	-0.00061591	3.9893	0.0021295	2.8355	0.0015136	533.8060234938253	45.067	1.1268	44.919	44.523	45.649	-0.1488					123	32	5	0	0	0	0.60198	1	4365	4365		76.774	14.667	1	51243000	+		75329	25474	52493	52581	82887	82887					0.06291950083118536
SPSISPTWN	9	Unmodified	_SPSISPTWN_					0	0	0			REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	REV__nc|ENSG00000186090|Q70Z44-2|HTR3D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.77410888671875	2	494.740357	987.46616	-0.61384	-0.00030369	0.63634	0.00031482	0.022503	1.1133E-05	494.74042776676094	21.072	0.19703	21.072	20.998	21.195	0					5	3	2	0	0	0	0.024511	1	611	611		25.574	0.12388	1	8489.1	+		75330	27823	52494	52582	82888	82888					-0.028073958618620054
SPSLKKLAM	9	Unmodified	_SPSLKKLAM_					0	0	0			REV__EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	REV__EME1|p.S6L|1|0.19|ENSG00000154920|chr17:50375225-50375225|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7906799316406	2	487.788795	973.563038	0.33726	0.00016451	3.3292	0.001624	3.6665	0.0017885	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.99229	1	10057	10057		21.96	0	1	1999500	+		75331	19749	52495	52583	82889	82889					0.0751987509358969
SPSLPNITL	9	Unmodified	_SPSLPNITL_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;HDAC4|p.P800Lfs*30|1|0.21|ENSG00000068024|chr2:239087589-239087589|G/-|frameshift_variant;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000068024|P56524|HDAC4;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF	ENST00000463007.5_1_2:240011659-240219867:-|nuORF;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000048052|Q9UKV0-2|HDAC9	nc|ENSG00000048052|Q9UKV0-2|HDAC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.268798828125	2	471.26875	940.522947	0.99618	0.00046947	-0.69563	-0.00032783	0.30055	0.00014164	471.26825266472514	78.428	0.94969	78.236	77.891	78.841	-0.1921					43	22	3	0	0	0	0.67687	1	9673	9673		47.657	1.7054	1	2285200			75332	18046;1374;14726	52496	52584	82890	82890					0.0503065169467618
SPSNAQPRL	9	Unmodified	_SPSNAQPRL_					0	0	0		SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|1|1|sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|1|1|sense	SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|1|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2772521972656	2	485.259248	968.503943	0.06656	3.2299E-05	-0.043433	-2.1076E-05	0.023127	1.1223E-05	485.2591093028872	41.728	0.95566	41.728	41.505	42.461	0					44	27	2	0	0	0	0.022657	1	3851	3851		98.629	23.586	1	5480700			75333	37979	52497	52585	82891	82891					0.018431151236200094
SPSNQAVKL	9	Unmodified	_SPSNQAVKL_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2636413574219	2	472.263999	942.513445	-0.33861	-0.00015991	-0.28558	-0.00013487	-0.62419	-0.00029478	472.2638682529035	62.95	1.3012	62.71	62.37	63.671	-0.23926					118	34	5	0	0	0	0.14024	1	7325	7325		101.6	0	1	18045000	+		75334	22407	52498	52586	82892	82892					0.03988883409135724
SPSPDRAAR	9	Unmodified	_SPSPDRAAR_					0	0	0			REV__ENST00000399537.8_1_7:5347331-5347724:-|nuORF	REV__ENST00000399537.8_1_7:5347331-5347724:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7592468261719	2	478.749047	955.483542	0.21619	0.0001035	-2.0978	-0.0010043	-1.8816	-0.00090081	478.74784054312056	23.117	0.3892	23.117	22.894	23.283	0					12	8	2	0	0	0	0.024447	1	872	872		32.812	11.865	1	42502	+		75335	31833	52499	52587	82893	82893					0.004019444638061032
SPSPPPLYVSV	11	Unmodified	_SPSPPPLYVSV_					0	0	0			REV__OR2B6|p.Q261P|1|0.13|ENSG00000124657|chr6:27958022-27958022|A/C|missense_variant	REV__OR2B6|p.Q261P|1|0.13|ENSG00000124657|chr6:27958022-27958022|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.7282104492188	2	571.808239	1141.60193	0.67983	0.00038873	-0.91405	-0.00052266	-0.23421	-0.00013393	571.8074249102153	51.815	0.29359	51.631	51.412	51.705	-0.18404					14	7	2	0	0	0	0.024771	1	5328	5328		51.193	3.5354	1	154010	+		75336	37311	52500	52588	82894	82894					0.03678878928940321
SPSPRGADPP	10	Unmodified	_SPSPRGADPP_					0	0	0		ENST00000423546.1_1_9:115872405-115873737:-|nuORF	ENST00000423546.1_1_9:115872405-115873737:-|nuORF	ENST00000423546.1_1_9:115872405-115873737:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7431945800781	2	490.743431	979.472308	-0.009111	-4.4712E-06	-0.42073	-0.00020647	-0.42984	-0.00021094	490.7431420452156	31.605	1.1138	31.42	31.099	32.213	-0.18503					65	26	4	0	0	0	0.61732	1	2112	2112		75.043	0	1	2273100			75337	14027	52501	52589	82895	82895					-0.01824877630338051
SPSPRGPPEG	10	Unmodified	_SPSPRGPPEG_					0	0	0		ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.74322509765625	2	490.743431	979.472308	-0.40126	-0.00019692	-0.44612	-0.00021893	-0.84738	-0.00041585	490.743278686451	31.637	1.3845	31.637	31.257	32.642	0					92	34	5	0	0	0	0.28861	1	2135	2135		110.12	5.3733	1	13459000			75338	12862	52502	52590	82896	82896					-0.018248776303266823
SPSPRGPPEG	10	Unmodified	_SPSPRGPPEG_					0	0	0		ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.74334716796875	2	490.743431	979.472308	-0.28997	-0.0001423	-0.51988	-0.00025513	-0.80985	-0.00039743	490.7432328390175	31.54	1.4676	31.552	31.127	32.594	0.011799					100	36	4	0	0	0	0.40067	1	2113	2113		98.629	5.4339	1	14520000			75339	12862	52502	52590	82897	82897					-0.018248776303266823
SPSPRGPPEG	10	Unmodified	_SPSPRGPPEG_					0	0	0		ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.74298095703125	2	490.743431	979.472308	-0.53266	-0.0002614	0.19359	9.5004E-05	-0.33907	-0.0001664	490.74342273542754	31.71	1.0136	31.469	31.112	32.126	-0.24109					69	24	5	0	0	0	0.28861	2	2131	2131;2141		110.12	21.816	1	2665900			75340	12862	52502	52590	82898;82899	82898					-0.018248776303266823
SPSPRGPPEG	10	Unmodified	_SPSPRGPPEG_					0	0	0		ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.7434387207031	2	490.743431	979.472308	-0.009111	-4.4712E-06	-0.42073	-0.00020647	-0.42984	-0.00021094	490.7431420452156	31.605	1.1138	31.42	31.099	32.213	-0.18503					65	26	4	0	0	0	0.64538	1	2136	2136		71.877	0.58177	1	2273100			75341	12862	52502	52590	82900	82900					-0.018248776303266823
SPSPRGPPEG	10	Unmodified	_SPSPRGPPEG_					0	0	0		ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	ENST00000367537.7_2_1:183521209-183521392:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.74310302734375	2	490.743431	979.472308	-0.23576	-0.0001157	-0.22761	-0.0001117	-0.46336	-0.00022739	490.74324197801667	31.655	0.92322	31.503	31.161	32.084	-0.15231					61	22	4	0	0	0	0.40067	2	2110	2110;2121		98.629	6.45	1	2538400			75342	12862	52502	52590	82901;82902	82901					-0.018248776303266823
SPSQQINL	8	Unmodified	_SPSQQINL_					0	0	0		nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000490149.6_1_6:134494408-134495238:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	nc|ENSG00000118515|O00141-4|SGK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2428894042969	2	443.735074	885.455596	-1.1975	-0.00053136	-0.63208	-0.00028048	-1.8295	-0.00081184	443.73507893925085	38.842	0.42731	38.869	38.533	38.96	0.027275					16	10	2	0	0	0	0.027866	1	3186	3186		15.642	0	1	84136			75343	3690;16335	52503	52591	82903	82903					0.008286214837085026
SPSQTRKGPPV	11	Unmodified	_SPSQTRKGPPV_					0	0	0		nc|ENSG00000078053|P49418-2|AMPH;ENSG00000078053|ENST00000356264|AMPH	nc|ENSG00000078053|P49418-2|AMPH	nc|ENSG00000078053|P49418-2|AMPH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	576.3529052734375	2	577.319837	1152.62512	-1.5888	-0.00091725	2.2461	0.0012967	0.65725	0.00037945	577.8225022162535	44.995	0.92505	44.995	44.485	45.41	0					52	26	3	0	0	0	0.02475	1	4280	4280		28.081	0	1	273460			75344	1625	52504	52592	82904	82904					0.05491317766291104
SPSRLRKES	9	Unmodified	_SPSRLRKES_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3114013671875	2	530.298904	1058.58326	-0.42771	-0.00022681	-4.3607	-0.0023125	-4.7884	-0.0025393	530.2962119435418	60.69	0.94458	60.484	59.866	60.81	-0.20599					30	23	2	0	0	0	0.024447	1	6768	6768		32.812	4.9302	1	293700	+		75345	25925	52505	52593	82905	82905					0.05630762077748841
SPSRLRKES	9	Unmodified	_SPSRLRKES_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.298904	1058.58326	-1.2967	-0.00068761	-3.1407	-0.0016655	-4.4373	-0.0023531	530.2967782054952	60.516	1.0779	60.516	59.88	60.958	0	-0.0041666	-0.00018373	NaN	54.776	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1505900	+		75346	25925	52505	52593							0.05630762077748841
SPSRLRKES	9	Unmodified	_SPSRLRKES_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.298904	1058.58326	-0.92967	-0.000493	-3.4228	-0.0018151	-4.3524	-0.0023081	530.2967614667348	60.773	0.98667	60.56	60	60.987	-0.2134	0.040147	-0.00048291	NaN	54.776	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1329400	+		75347	25925	52505	52593							0.05630762077748841
SPSRLRKES	9	Unmodified	_SPSRLRKES_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.298904	1058.58326	-1.9556	-0.0010371	-2.0914	-0.0011091	-4.0471	-0.0021462	530.2975122297398	60.406	0.86503	60.485	59.974	60.839	0.078888	-0.034677	0.00092909	NaN	54.776	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1998800	+		75348	25925	52505	52593							0.05630762077748841
SPSRPPSSL	9	Unmodified	_SPSRPPSSL_					0	0	0		chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2474365234375	2	464.248349	926.482145	-0.70982	-0.00032953	0.27939	0.00012971	-0.43043	-0.00019982	464.2482904642857	33.293	1.48	33.293	32.531	34.011	0					72	39	3	0	0	0	0.094442	3	2408	2373;2384;2408		112.41	5.4265	1	3460100			75349	359	52506	52594	82906;82907;82908	82908					0.015963103750550545
SPSRPPSSL	9	Unmodified	_SPSRPPSSL_					0	0	0		chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2478942871094	2	464.248349	926.482145	-0.63853	-0.00029644	-0.082696	-3.8391E-05	-0.72123	-0.00033483	464.2481852196107	33.133	1.8299	33.14	32.371	34.201	0.0066223					82	48	3	0	0	0	0.094442	3	2355	2343;2355;2369		112.41	14.147	1	3603400			75350	359	52506	52594	82909;82910;82911	82910					0.015963103750550545
SPSRPPSSL	9	Unmodified	_SPSRPPSSL_					0	0	0		chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	chr19:287863-288020|110|17.96|0.33|5.79|-|1|None,PLPP2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2477722167969	2	464.248349	926.482145	1.0428	0.00048413	-1.7547	-0.00081461	-0.71185	-0.00033047	464.247411451155	33.032	1.604	33.089	32.533	34.137	0.056572					78	41	3	0	0	0	0.10464	2	2318	2293;2318		109.48	24.318	1	3384300			75351	359	52506	52594	82912;82913	82913					0.015963103750550545
SPSSILSTL	9	Unmodified	_SPSSILSTL_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000250254|Q9NZH5|PTTG2;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.7532043457031	2	452.752933	903.491313	1.8057	0.00081754	-1.6646	-0.00075363	0.14117	6.3913E-05	452.7519967333961	74.491	1.1091	74.491	74.084	75.194	0					71	26	4	0	0	0	0.074956	4	9107	9097;9107;9118;9130		119.56	13.142	1	4873800			75352	7299	52507	52595	82914;82915;82916;82917	82915					0.035706589407254796
SPSSILSTL	9	Unmodified	_SPSSILSTL_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000250254|Q9NZH5|PTTG2;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.7530822753906	2	452.752933	903.491313	0.49848	0.00022569	-0.35018	-0.00015854	0.1483	6.7144E-05	452.75261639872423	74.73	1.1747	74.471	74.114	75.289	-0.25887					64	28	4	0	0	0	0.049585	4	9112	9102;9112;9123;9136		128.86	21.821	1	5146500			75353	7299	52507	52595	82918;82919;82920;82921	82919					0.035706589407254796
SPSSILSTL	9	Unmodified	_SPSSILSTL_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000250254|Q9NZH5|PTTG2;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.75299072265625	2	452.752933	903.491313	-0.36015	-0.00016306	0.49998	0.00022637	0.13983	6.3308E-05	452.75302931643677	74.519	1.1875	74.528	74.138	75.325	0.0096512					75	28	5	0	0	0	0.040175	5	9020	9020;9029;9041;9053;9067		133.47	26.088	1	4893700			75354	7299	52507	52595	82922;82923;82924;82925;82926	82922					0.035706589407254796
SPSSRGLLV	9	Unmodified	_SPSSRGLLV_					0	0	0			REV__ENSG00000159388|ENST00000290551|BTG2	REV__ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.2664794921875	2	458.266542	914.51853	-0.63385	-0.00029047	0.66578	0.0003051	0.031927	1.4631E-05	458.26666868268615	28.482	1.0627	28.313	27.966	29.029	-0.16897					58	24	3	0	0	0	0.67308	1	1685	1685		47.916	0	1	1512400	+		75355	25252	52508	52596	82927	82927					0.05785187271771974
SPSSVTGNAL	10	Unmodified	_SPSSVTGNAL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.7377014160156	2	466.737814	931.461075	-0.56035	-0.00026153	0.058982	2.7529E-05	-0.50136	-0.00023401	466.73781347457845	45.095	0.92117	45.095	44.758	45.679	0					74	26	4	0	0	0	0.26127	2	4364	4352;4364		113.41	5.3241	1	9434300			75356	7616	52509	52597	82928;82929	82929					-0.0073969972447684995
SPSSVTGNAL	10	Unmodified	_SPSSVTGNAL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7381591796875	2	466.737814	931.461075	0.54457	0.00025417	-0.90974	-0.00042461	-0.36517	-0.00017044	466.73731749674306	45.081	0.95982	45.124	44.756	45.716	0.04388					81	27	5	0	0	0	0.19121	2	4289	4289;4302		122.18	5.4253	1	9540300			75357	7616	52509	52597	82930;82931	82930					-0.0073969972447684995
SPSTCYLHTT	10	Unmodified	_SPSTCYLHTT_					0	0	0			REV__ENST00000423112.2_1_9:3568814-3671485:+|nuORF	REV__ENST00000423112.2_1_9:3568814-3671485:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.2643432617188	2	555.250231	1108.48591	-0.34285	-0.00019037	2.1636	0.0012013	1.8208	0.001011	555.251566961287	32.27	0.50175	32.27	32.03	32.531	0					26	12	3	0	0	0	0.03519	1	2186	2186		34.173	0	1	254070	+		75358	32212	52510	52598	82932	82932					-0.06399387913415922
SPSVKSPGAV	10	Unmodified	_SPSVKSPGAV_					0	0	0		ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	ENSG00000144668|ENST00000264741|ITGA9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.758544921875	2	464.758549	927.502546	-0.70158	-0.00032607	0.90493	0.00042058	0.20335	9.4508E-05	464.7587868518152	53.511	0.79794	53.364	53.023	53.821	-0.14723					55	21	4	0	0	0	0.91678	1	5765	5765		52.937	5.2794	1	2732200			75359	5758	52511	52599	82933	82933					0.03589481034862274
SPSWGQAGVP	10	Unmodified	_SPSWGQAGVP_					0	0	0		ENST00000563328.4_1_16:72822270-72822732:+|nuORF	ENST00000563328.4_1_16:72822270-72822732:+|nuORF	ENST00000563328.4_1_16:72822270-72822732:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.77252197265625	2	493.240524	984.466495	-0.84702	-0.00041778	-3.6041	-0.0017777	-4.4511	-0.0021955	493.2386266840303	20.709	0.62883	20.709	20.468	21.097	0					20	12	3	0	0	0	0.03519	1	588	588		40.778	1.5253	1	36143			75360	16864	52512	52600	82934	82934					-0.026359761419939787
SPSYVPLFKD	10	Unmodified	_SPSYVPLFKD_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3;ENST00000515601.6_1_5:465213-467010:+|nuORF	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8436279296875	2	576.800414	1151.58628	-0.81254	-0.00046867	0.90182	0.00052017	0.08928	5.1497E-05	576.8006418277935	89.822	0.59721	89.694	89.37	89.967	-0.12774					21	13	2	0	0	0	0.03519	1	10956	10956		54.776	21.964	1	172770			75361	8961	52513	52601	82935	82935					0.01654592411887279
SPTAAPRLP	9	Unmodified	_SPTAAPRLP_					0	0	0			REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|7|1|sense	REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|7|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2431335449219	2	455.261259	908.507966	-0.082639	-3.7622E-05	2.2792	0.0010376	2.1965	0.00099999	455.26110012150417	36.73	0.78834	36.768	36.444	37.232	0.038044					39	20	3	0	0	0	0.023635	1	2874	2874		76.774	0	1	135100	+		75362	19352	52514	52602	82936	82936					0.050052046173163944
SPTARLALA	9	Unmodified	_SPTARLALA_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2686462402344	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.50848	1	3173	3173		58.782	3.2778	1	141320000	+		75363	29558	52515	52603	82937	82937					0.07029491134369437
SPTARLALA	9	Unmodified	_SPTARLALA_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.26873779296875	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.15029	2	3145	3145;3181		99.375	17.07	1	136700000	+		75364	29558	52515	52603	82938;82939	82938					0.07029491134369437
SPTARLALA	9	Unmodified	_SPTARLALA_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.269084	898.523616	-0.30976	-0.00013947	0.2958	0.00013319	-0.013958	-6.2849E-06	450.2689909077782	38.103	0.39445	37.923	37.775	38.17	-0.17929	-0.090702	0.00090582	NaN	99.375	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139770	+		75365	29558	52515	52603							0.07029491134369437
SPTARLALA	9	Unmodified	_SPTARLALA_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.269084	898.523616	-0.69408	-0.00031252	0.40433	0.00018206	-0.28975	-0.00013046	450.2690641887289	38.172	0.32744	37.953	37.755	38.083	-0.21848	-0.060762	0.0010036	NaN	99.375	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125780	+		75366	29558	52515	52603							0.07029491134369437
SPTELIAV	8	Unmodified	_SPTELIAV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.26104736328125	2	415.236919	828.459284	1.3743	0.00057064	3.3632	0.0013965	4.7374	0.0019672	415.2380609856558	20.371	0.19757	20.44	20.267	20.464	0.068901					5	3	2	0	0	0	0.027866	1	485	485		83.287	8.7706	1	13430			75367	1054	52516	52604	82940	82940					0.03819291257570967
SPTERSQKG	9	Unmodified	_SPTERSQKG_					0	0	0			REV__ENST00000282030.5_1_18:42643830-42643974:+|nuORF	REV__ENST00000282030.5_1_18:42643830-42643974:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.28948974609375	2	495.254163	988.493772	0.07167	3.5495E-05	-2.847	-0.00141	-2.7754	-0.0013745	495.2525606294221	61.432	0.67417	61.205	60.899	61.573	-0.22663					28	17	2	0	0	0	0.023635	1	7132	7132		66.429	18.772	1	413400	+		75368	29889	52517	52605	82941	82941					-0.0009349260161570783
SPTGTGKSL	9	Unmodified	_SPTGTGKSL_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2295837402344	2	424.229625	846.444697	-0.80057	-0.00033962	1.271	0.0005392	0.47045	0.00019958	424.23012630916554	24.102	1.3085	24.102	23.566	24.874	0					70	29	3	0	0	0	0.10174	1	1008	1008		110.12	17.929	1	2836600			75369	628	52518	52606	82942	82942					0.015332191094330483
SPTGTGKSL	9	Unmodified	_SPTGTGKSL_					0	0	0		ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;DDX11|p.Q757Pfs*25|1|0.2|ENSG00000013573|chr12:31102306-31102307|-/T|frameshift_variant;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-5|DDX11	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	ENST00000535158.5_1_12:31227017-31242187:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.22967529296875	2	424.229625	846.444697	-1.0371	-0.00043997	1.31	0.00055573	0.27288	0.00011576	424.23008529613975	24.111	1.1781	24.064	23.4	24.578	-0.047148					88	26	5	0	0	0	0.053401	3	1004	994;1004;1017		127.46	13.474	1	2489100			75370	628	52518	52606	82943;82944;82945	82944					0.015332191094330483
SPTHPSSAL	9	Unmodified	_SPTHPSSAL_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.7276611328125	2	448.727249	895.439946	-0.32468	-0.00014569	0.40079	0.00017984	0.076107	3.4151E-05	448.72730601281546	29.182	0.58751	29.261	28.979	29.566	0.078346					34	14	3	0	0	0	0.096521	1	1717	1717		111.65	23.005	1	749970			75371	18573	52519	52607	82946	82946					-0.011956650333331709
SPTHPSSAL	9	Unmodified	_SPTHPSSAL_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	448.727249	895.439946	-1.1245	-0.00050459	1.2592	0.00056503	0.13469	6.0438E-05	448.72771586716595	29.504	0.83406	29.504	29.223	30.057	0	0.10069	0.00037886	NaN	111.65	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	705220			75372	18573	52519	52607							-0.011956650333331709
SPTHPSSAL	9	Unmodified	_SPTHPSSAL_					0	0	0		nc|ENSG00000182872|P98175-5|RBM10;nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10	nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-5|RBM10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	448.727249	895.439946	-0.35709	-0.00016024	0.553	0.00024815	0.19591	8.7909E-05	448.7273864110135	29.442	0.66655	29.445	29.166	29.833	0.0031376	0.041953	-0.00025491	NaN	111.65	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729940			75373	18573	52519	52607							-0.011956650333331709
SPTINQANIV	10	Unmodified	_SPTINQANIV_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.295166015625	2	528.787838	1055.56112	-0.76616	-0.00040513	1.4943	0.00079016	0.72813	0.00038502	528.7884887491863	45.482	0.30155	45.333	45.214	45.515	-0.1488					19	8	3	0	0	0	0.03519	1	4384	4384		19.104	0	1	781390			75374	8707	52520	52608	82947	82947					0.035565376093245504
SPTKKVAV	8	Unmodified	_SPTKKVAV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2610168457031	2	415.260728	828.506903	-0.10251	-4.2569E-05	0.38796	0.00016111	0.28545	0.00011854	415.26087388806656	20.504	0.96532	20.4	20.178	21.143	-0.10477					52	19	4	0	0	0	0.77775	1	524	524		60.972	3.1607	1	2920200			75375	3405	52521	52609	82948	82948					0.08578990248417995
SPTKPTFG	8	Unmodified	_SPTKPTFG_					0	0	0			REV__MFSD2B|p.S480F|1|0.16|ENSG00000205639|chr2:24024220-24024220|C/T|missense_variant	REV__MFSD2B|p.S480F|1|0.16|ENSG00000205639|chr2:24024220-24024220|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	417.7327880859375	2	417.721436	833.428318	-0.49832	-0.00020816	1.8801	0.00078536	1.3818	0.0005772	417.72204474595804	39.421	0.30325	39.198	38.999	39.302	-0.22311					10	7	2	0	0	0	0.027866	1	3328	3328		47.916	18.766	1	63151	+		75376	36376	52522	52610	82949	82949					0.004941379433262227
SPTLRSGGSL	10	Unmodified	_SPTLRSGGSL_					0	0	0		ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	487.7669372558594	2	487.766906	973.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.028	1	39.916	39.416	40.416	-0.11223								0	0	0	0.25758	1	3473	3473		78.264	1.4896	1				75377	16927	52523	52611	82950	82950					0.0314398192082308
SPTPLTHL	8	Unmodified	_SPTPLTHL_					0	0	0		ENST00000461547.5_1_20:56189977-56190695:-|nuORF	ENST00000461547.5_1_20:56189977-56190695:-|nuORF	ENST00000461547.5_1_20:56189977-56190695:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2559509277344	2	433.242535	864.470518	0.55834	0.0002419	1.2854	0.00055688	1.8437	0.00079878	433.24292670223514	102.73	0.51688	102.73	102.24	102.76	-0.0046082					14	11	2	0	0	0	0.027866	1	13073	13073		42.474	0	1	484580			75378	14685	52524	52612	82951	82951					0.03286113351714448
SPTQFCLLD	9	Unmodified	_SPTQFCLLD_					0	0	0			REV__ENSG00000172680|ENST00000311923|MOS	REV__ENSG00000172680|ENST00000311923|MOS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.3075866699219	2	512.244418	1022.47428	-0.10971	-5.6197E-05	3.6876	0.001889	3.5779	0.0018328	512.2461539131618	68.635	2.0164	68.653	67.781	69.798	0.018913					87	52	3	0	0	0	0.024427	1	8055	8055		26.693	0	1	980500	+		75379	26697	52525	52613	82952	82952					-0.03605584936747164
SPTSRLKP	8	Unmodified	_SPTSRLKP_					0	0	0		ENST00000409257.9_1_17:76198618-76200771:+|nuORF	ENST00000409257.9_1_17:76198618-76200771:+|nuORF	ENST00000409257.9_1_17:76198618-76200771:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.74005126953125	2	443.261259	884.507966	0.34158	0.00015141	3.4258	0.0015185	3.7674	0.0016699	443.26291500926794	25.243	0.6981	25.323	25.05	25.749	0.08009					20	16	2	0	0	0	0.027866	1	1160	1160		24.203	5.8783	1	51108			75380	13767	52526	52614	82953	82953					0.061092046173257586
SPTSSRTSSL	10	Unmodified	_SPTSSRTSSL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.75848388671875	2	511.759278	1021.504	-0.64231	-0.00032871	-0.20402	-0.00010441	-0.84633	-0.00043312	511.759131468698	26.102	0.9203	26.102	25.611	26.531	0					62	21	4	0	0	0	0.13984	2	1303	1303;1317		128.6	35.407	1	2492500			75381	1550	52527	52615	82954;82955	82954					-0.005889296670375188
SPTSSRTSSL	10	Unmodified	_SPTSSRTSSL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.7586975097656	2	511.759278	1021.504	-0.5545	-0.00028377	-0.24469	-0.00012522	-0.79919	-0.00040899	511.7591016596539	26.114	0.58152	26.091	25.864	26.446	-0.023088					25	13	2	0	0	0	0.082298	2	1291	1279;1291		140.11	24.301	1	2545900			75382	1550	52527	52615	82956;82957	82957					-0.005889296670375188
SPTSSRTSSL	10	Unmodified	_SPTSSRTSSL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.7590637207031	2	511.759278	1021.504	-0.064262	-3.2887E-05	-0.29398	-0.00015045	-0.35824	-0.00018333	511.75916858476853	25.82	0.54216	25.9	25.706	26.248	0.08009					24	12	2	0	0	0	0.13984	2	1205	1205;1219		128.6	21.595	1	2609200			75383	1550	52527	52615	82958;82959	82958					-0.005889296670375188
SPTSSRTSSL	10	Unmodified	_SPTSSRTSSL_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000473624.1_1_22:46759891-46761251:-|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.759278	1021.504	-0.43243	-0.0002213	1.1712	0.0005994	0.73882	0.0003781	512.2587852304716	26.269	0.16427	26.35	26.249	26.414	0.081293	0.16902	0.00081306	NaN	140.11	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12769			75384	1550	52527	52615							-0.005889296670375188
SPTVFLPLP	9	Unmodified	_SPTVFLPLP_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.2978515625	2	485.784036	969.553519	0.26071	0.00012665	-2.946	-0.0014311	-2.6853	-0.0013045	485.7822393751622	56.494	0.23232	56.278	56.197	56.429	-0.21607					8	5	2	0	0	0	0.024487	1	6114	6114		24.203	0	1	53664			75385	18304	52528	52616	82960	82960					0.06752430079700389
SPTVSPVPS	9	Unmodified	_SPTVSPVPS_					0	0	0		nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	REV__ENSG00000186567|ENST00000358777|CEACAM19	REV__ENSG00000186567|ENST00000358777|CEACAM19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.77978515625	2	435.732	869.449448	-0.20195	-8.7995E-05	3.7643	0.0016402	3.5624	0.0015522	435.73285150611747	36.483	0.51027	36.278	36.056	36.566	-0.20518					19	12	2	0	0	0	0.024205	1	2861	2861		44.117	14.967	1	339410			75386	7885	52529	52617	82961	82961					0.009501032521939123
SPVAGVILL	9	Unmodified	_SPVAGVILL_					0	0	0		ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-2|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.25567626953125	2	434.778754	867.542954	-0.70209	-0.00030525	3.5486	0.0015428	2.8465	0.0012376	434.78014905088327	43.99	1.7815	43.99	43.332	45.114	0					128	50	3	0	0	0	0.024386	1	4183	4183		18.324	0.95945	1	2428500			75387	10326	52530	52618	82962	82962					0.10388447425293634
SPVAGVILL	9	Unmodified	_SPVAGVILL_					0	0	0		ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-2|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2562561035156	2	434.778754	867.542954	-0.91743	-0.00039888	3.8481	0.0016731	2.9306	0.0012742	434.78029864059715	44.12	1.5504	43.975	43.497	45.048	-0.14471					123	44	3	0	0	0	0.024183	1	4192	4192		31.955	2.8053	1	2196700			75388	10326	52530	52618	82963	82963					0.10388447425293634
SPVAGVILL	9	Unmodified	_SPVAGVILL_					0	0	0		ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-2|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.2563171386719	2	434.778754	867.542954	0.10241	4.4526E-05	2.8694	0.0012476	2.9718	0.0012921	434.77985400852975	44.03	1.5749	44.067	43.528	45.103	0.0369					117	44	3	0	0	0	0.024183	1	4128	4128		31.955	2.8053	1	2940600			75389	10326	52530	52618	82964	82964					0.10388447425293634
SPVCRVVAR	9	Unmodified	_SPVCRVVAR_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.76898193359375	2	493.781836	985.549119	-0.33089	-0.00016339	-4.0837	-0.0020165	-4.4146	-0.0021798	493.77963213710524	69.978	0.51865	69.99	69.585	70.104	0.012421					18	12	2	0	0	0	0.024323	1	8353	8353		27.882	7.0451	1	285080	+		75390	26898	52531	52619	82965	82965					0.055766423851537184
SPVFDQGMI	9	Oxidation (M)	_SPVFDQGM(Oxidation (M))I_		SPVFDQGM(1)I		SPVFDQGM(64)I	0	0	1			REV__ENSG00000173825|ENST00000309880|TIGD3	REV__ENSG00000173825|ENST00000309880|TIGD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.2386169433594	2	505.236593	1008.45863	0.44237	0.0002235	2.7432	0.001386	3.1856	0.0016095	505.2378274904992	63.477	0.97178	63.477	63.196	64.168	0					67	26	5	0	0	0	0.42604	1	7431	7431		64.207	7.4862	1	3971100	+		75391	26811	52532	52620	82966	82966		792			-0.04525871453779473
SPVFDQGMI	9	Oxidation (M)	_SPVFDQGM(Oxidation (M))I_		SPVFDQGM(1)I		SPVFDQGM(79)I	0	0	1			REV__ENSG00000173825|ENST00000309880|TIGD3	REV__ENSG00000173825|ENST00000309880|TIGD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.23846435546875	2	505.236593	1008.45863	1.5607	0.0007885	1.6875	0.0008526	3.2482	0.0016411	505.23729099670436	63.473	1.0351	63.527	63.162	64.197	0.054104					59	28	3	0	0	0	0.27161	1	7346	7346		79.451	13.022	1	4169000	+		75392	26811	52532	52620	82967	82967		792			-0.04525871453779473
SPVGPRTL	8	Unmodified	_SPVGPRTL_					0	0	0		ENST00000442496.1_1_22:37880295-37880663:-|nuORF	ENST00000442496.1_1_22:37880295-37880663:-|nuORF	ENST00000442496.1_1_22:37880295-37880663:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7616882324219	2	413.742702	825.470852	-0.043801	-1.8122E-05	0.37084	0.00015343	0.32704	0.00013531	413.74284154250455	45.435	0.43459	45.479	45.145	45.58	0.043877					17	12	2	0	0	0	0.027866	1	4345	4345		87.754	8.3033	1	102300			75393	14382	52533	52621	82968	82968					0.05113533071573784
SPVKPRAL	8	Unmodified	_SPVKPRAL_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.2742004394531	2	434.27417	866.533787	-0.24981	-0.00010849	0.28183	0.00012239	0.032024	1.3907E-05	434.27424686284786	54.734	1.8656	54.588	53.858	55.723	-0.14609					94	52	4	0	0	0	0.78609	1	5857	5857		60.294	2.8413	1	11941000	+		75394	27601	52534	52622	82969	82969					0.09518098859598467
SPVLEPTID	9	Unmodified	_SPVLEPTID_					0	0	0			REV__ENSG00000186190|ENST00000375494|BPIFB3	REV__ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7871398925781	2	485.758215	969.501877	-0.70361	-0.00034179	2.0604	0.0010008	1.3568	0.00065906	485.7594182657734	44.928	0.65054	44.928	44.691	45.342	0					27	18	3	0	0	0	0.024427	1	4297	4297		26.693	0	1	178270	+		75395	27833	52535	52623	82970	82970					0.015906415951349118
SPVLFILLL	9	Unmodified	_SPVLFILLL_					0	0	0		ENST00000555402.1_1_14:97343792-97347542:+|nuORF	ENST00000555402.1_1_14:97343792-97347542:+|nuORF	ENST00000555402.1_1_14:97343792-97347542:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.83203125	2	507.833529	1013.6525	0.003754	1.9064E-06	-1.0546	-0.00053556	-1.0508	-0.00053365	507.83321117903404	106.69	0.30757	106.57	106.47	106.77	-0.1238					14	9	2	0	0	0	1.0051	1	13271	13271		19.36	3.7238	1	81043			75396	16683	52536	52624	82971	82971					0.14622453044626127
SPVLIKKFSD	10	Unmodified	_SPVLIKKFSD_					0	0	0		ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3297729492188	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0508	1	11235	11235		39.253	4.1008	1	19210000			75397	1153	52537	52625	82972	82972					0.0881915819995811
SPVLITIPNPV	11	Unmodified	_SPVLITIPNPV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3455200195312	2	575.347532	1148.68051	0.52304	0.00030093	-4.1315	-0.0023771	-3.6085	-0.0020761	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	1.0292	1	12368	12368		30.318	2.4355	1	4068000	+		75398	25017	52538	52626	82973	82973					0.11211731234061517
SPVMGYFV	8	Unmodified	_SPVMGYFV_					0	0	0		ENSG00000036448|ENST00000262113|MYOM2;MYOM2|p.F821*|1|0.13|ENSG00000036448|chr8:2100886-2100887|-/GACTT|frameshift_variant	ENSG00000036448|ENST00000262113|MYOM2	ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2742919921875	2	450.220214	898.425876	-0.41672	-0.00018762	3.6856	0.0016593	3.2688	0.0014717	450.22282284494156	92.121	0.19312	92.121	91.985	92.178	0					7	4	2	0	0	0	0.027866	1	11678	11678		29.842	1.5873	1	122380			75399	1040	52539	52627	82974	82974					-0.027400337859717183
SPVQPGAPYG	10	Unmodified	_SPVQPGAPYG_					0	0	0		ENST00000432223.2_1_11:73141522-73179519:-|nuORF;nc|ENSG00000054965|Q92567-3|FAM168A;ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567|FAM168A	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	ENST00000432223.2_1_11:73141522-73179519:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7770080566406	2	486.742899	971.471246	-0.62389	-0.00030367	-2.6295	-0.0012799	-3.2534	-0.0015836	486.7415295418418	29.29	0.90891	29.293	28.883	29.792	0.0031357					57	22	3	0	0	0	0.03519	1	1837	1837		37.812	19.487	1	3995400			75400	1180	52540	52628	82975	82975					-0.01563091999230437
SPVSPLIWLP	10	Unmodified	_SPVSPLIWLP_					0	0	0			REV__ENST00000171887.8_1_2:218712537-218712654:-|nuORF	REV__ENST00000171887.8_1_2:218712537-218712654:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.2564697265625	2	554.823692	1107.63283	-0.53885	-0.00029897	-3.4586	-0.0019189	-3.9974	-0.0022179	554.8220254107139	45.182	0.37387	44.971	44.715	45.089	-0.21109					12	9	2	0	0	0	0.03519	1	4255	4255		21.96	4.4919	1	92650	+		75401	29282	52541	52629	82976	82976					0.08332077033855967
SPVSSRKA	8	Unmodified	_SPVSSRKA_					0	0	0			REV__OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant	REV__OSBPL1A|p.F749Lfs*59|1|0.27|ENSG00000141447|chr18:24171453-24171453|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.23822021484375	2	416.237784	830.461016	2.0395	0.00084891	-0.0048	-1.9979E-06	2.0347	0.00084691	416.237657627207	19.773	1.6125	19.839	19.587	21.2	0.066195					66	32	3	0	0	0	1.0574	1	445	445		18.324	1.8513	1	419820	+		75402	37339	52542	52630	82977	82977					0.03900345066188038
SPVTPAQNN	9	Unmodified	_SPVTPAQNN_					0	0	0		nc|ENSG00000065609|O60641-3|SNAP91;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2502746582031	2	464.230156	926.445759	-0.59963	-0.00027837	-3.3626	-0.001561	-3.9623	-0.0018394	464.22863212726287	48.148	0.23406	47.995	47.891	48.125	-0.15301					12	6	2	0	0	0	0.024457	1	4855	4855		21.96	0	1	398040			75403	1312	52543	52631	82978	82978					-0.02040566521668552
SPVTSLRNW	9	Unmodified	_SPVTSLRNW_					0	0	0		ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4	ENSG00000113430|ENST00000231357|IRX4	ENSG00000113430|ENST00000231357|IRX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	530.282723	1058.55089	-0.33104	-0.00017555	-0.55929	-0.00029658	-0.89034	-0.00047213	530.2824904478331	39.751	1.0224	39.751	39.076	40.099	0					97	28	5	0	0	0	0.25032	1	3484	3484		82.305	13.518	1	34885000			75404	3294	52544	52632	82979	82979					0.023959746747550525
SPVTSLRNW	9	Unmodified	_SPVTSLRNW_					0	0	0		ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4	ENSG00000113430|ENST00000231357|IRX4	ENSG00000113430|ENST00000231357|IRX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2825317382812	2	530.282723	1058.55089	-1.3324	-0.00070657	0.50181	0.0002661	-0.83063	-0.00044047	530.2830630883997	39.795	0.90594	39.682	39.15	40.055	-0.11222					94	24	5	0	0	0	0.25032	1	3421	3421		82.305	2.5924	1	30176000			75405	3294	52544	52632	82980	82980					0.023959746747550525
SPVTSLRNW	9	Unmodified	_SPVTSLRNW_					0	0	0		ENSG00000113430|ENST00000231357|IRX4;nc|ENSG00000113430|P78413-2|IRX4	ENSG00000113430|ENST00000231357|IRX4	ENSG00000113430|ENST00000231357|IRX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2823486328125	2	530.282723	1058.55089	-0.9302	-0.00049327	0.3213	0.00017038	-0.6089	-0.00032289	530.2829447798715	39.967	0.82627	39.99	39.561	40.387	0.023006					88	20	5	0	0	0	0.25032	1	3450	3450		82.305	8.05	1	31256000			75406	3294	52544	52632	82981	82981					0.023959746747550525
SPVVPRVL	8	Unmodified	_SPVVPRVL_					0	0	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.2382507324219	2	433.776545	865.538538	0.13426	5.824E-05	0.13671	5.9302E-05	0.27097	0.00011754	433.77646416967787	34.147	0.8214	34.142	33.908	34.73	-0.0045624					40	20	3	0	0	0	0.027866	1	2516	2516		38.806	0	1	364270	+		75407	25913	52545	52633	82982	82982					0.10038983002368695
SPVVRVAV	8	Unmodified	_SPVVRVAV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.7616271972656	2	413.760895	825.507237	-0.076645	-3.1713E-05	-0.20301	-8.3996E-05	-0.27965	-0.00011571	413.7606839575035	45.546	0.94698	45.395	45.007	45.954	-0.15142					52	27	3	0	0	0	0.62178	1	4424	4424		74.255	5.7703	1	4288300			75408	7717	52546	52634	82983	82983					0.08750409968286021
SPVVSPFGVA	10	Unmodified	_SPVVSPFGVA_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75018310546875	2	480.263468	958.512382	-1.0284	-0.00049389	-2.1867	-0.0010502	-3.2151	-0.0015441	480.2617967835478	29.743	0.93137	29.821	29.368	30.3	0.078344					40	22	3	0	0	0	0.03519	1	1841	1841		20.947	0	1	1061400			75409	7543	52547	52635	82984	82984					0.03146669040245342
SPWALTSL	8	Unmodified	_SPWALTSL_					0	0	0		nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF	nc|ENSG00000068137|Q7Z736-2|PLEKHH3	nc|ENSG00000068137|Q7Z736-2|PLEKHH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.2427673339844	2	437.737086	873.459619	-0.40515	-0.00017735	-4.2839	-0.0018752	-4.6891	-0.0020526	437.7353373421447	34.172	0.47663	34.223	33.965	34.441	0.050255					30	11	4	0	0	0	0.027866	1	2442	2442		68.485	52.843	1	207470			75410	17357	52548	52636	82985	82985					0.01782710977431634
SPWAPCLLL	9	Unmodified	_SPWAPCLLL_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;NCKAP5L|p.A728Gfs*82|1|0.29|ENSG00000167566|chr12:49795677-49795678|-/C|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.78924560546875	2	500.270238	998.525924	-0.45112	-0.00022568	-4.1087	-0.0020555	-4.5599	-0.0022812	500.2683831286286	92.664	0.59064	92.655	92.353	92.944	-0.0082855					30	13	3	0	0	0	0.024386	1	11751	11751		52.299	15.14	1	154670			75411	7703	52549	52637	82986	82986					0.02660203547816309
SPWASLSPPI	10	Unmodified	_SPWASLSPPI_					0	0	0			REV__ENST00000413764.6_1_1:210573872-210573941:+|nuORF	REV__ENST00000413764.6_1_1:210573872-210573941:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7484741210938	2	527.782025	1053.5495	0.5147	0.00027165	-0.86515	-0.00045661	-0.35045	-0.00018496	528.7840479259853	85.189	0.6211	85.039	84.747	85.368	-0.14967					25	14	3	0	0	0	0.03519	1	10345	10345		62.107	37.905	1	142930	+		75412	32027	52550	52638	82987	82987					0.024863405860060084
SPWEQQPPAPR	11	Unmodified	_SPWEQQPPAPR_					0	0	0		ENST00000374467.3_1_6:33545384-33547908:-|nuORF	ENST00000374467.3_1_6:33545384-33547908:-|nuORF	ENST00000374467.3_1_6:33545384-33547908:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	431.5511779785156	3	431.550921	1291.63093	-0.69774	-0.00030111	0.7341	0.0003168	0.036355	1.5689E-05	431.5512840732986	36.327	1.51	36.284	35.963	37.473	-0.042454					131	40	6	0	0	0	0.91387	1	2863	2863		50.791	5.769	1	16854000			75413	13115	52551	52639	82988	82988					-0.003215837220523099
SPWEQRPE	8	Unmodified	_SPWEQRPE_					0	0	0		ENST00000414172.1_2_9:136342329-136344181:-|nuORF	ENST00000414172.1_2_9:136342329-136344181:-|nuORF	ENST00000414172.1_2_9:136342329-136344181:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.8150634765625	2	514.743431	1027.47231	-0.65607	-0.00033771	0.68479	0.00035249	0.028721	1.4784E-05	514.7452562643958	44.789	0.27997	44.826	44.715	44.995	0.036903					11	7	2	0	0	0	0.027866	1	4241	4241		38.806	21.441	1	59974			75414	13857	52552	52640	82989	82989					-0.04032877630334042
SPWFWWSPTEH	11	Unmodified	_SPWFWWSPTEH_					0	0	0		ENST00000336230.10_1_1:54665916-54675667:+|nuORF	ENST00000336230.10_1_1:54665916-54675667:+|nuORF	ENST00000336230.10_1_1:54665916-54675667:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2919921875	3	487.219172	1458.63569	0.078168	3.8085E-05	-2.595	-0.0012643	-2.5169	-0.0012263	487.21812549006944	60.01	0.64169	59.761	59.495	60.137	-0.24842					38	16	4	0	0	0	0.02484	1	6678	6678		22.562	6.0317	1	450820			75415	12404	52553	52641	82990	82990					-0.07528699579302156
SPWGWFAVT	9	Unmodified	_SPWGWFAVT_					0	0	0		nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF	nc|ENSG00000167549|Q6QEF8-4|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3055419921875	2	525.75581	1049.49707	-1.2443	-0.00065418	-2.646	-0.0013912	-3.8903	-0.0020453	525.7540618304325	65.656	0.29012	65.442	65.215	65.505	-0.21327					10	6	2	0	0	0	0.02435	1	7505	7505		51.335	12.529	1	97217			75416	14894	52554	52642	82991	82991					-0.025701977569497103
SPWHEGVNC	9	Unmodified	_SPWHEGVNC_					0	0	0		RNF217-TPD52L1|3|fusion;RNF217-TPD52L1|2|fusion;RNF217-TPD52L1|1|fusion;RNF217-TPD52L1|4|fusion;nc|ENSG00000146373|Q8TC41-2|RNF217;ENSG00000146373|ENST00000521654|RNF217	RNF217-TPD52L1|3|fusion;ENSG00000146373|ENST00000521654|RNF217	ENSG00000146373|ENST00000521654|RNF217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.815185546875	2	514.716359	1027.41816	-0.89484	-0.00046059	-1.6227	-0.00083523	-2.5175	-0.0012958	514.7156276362247	44.829	0.45562	44.829	44.587	45.043	0					21	12	3	0	0	0	0.024381	1	4327	4327		29.15	6.1071	1	163350			75417	5874;37842	52555	52643	82992	82992					-0.09444793053557987
SPWLAYAVP	9	Unmodified	_SPWLAYAVP_					0	0	0		ENSG00000170893|ENST00000302649|TRH	ENSG00000170893|ENST00000302649|TRH	ENSG00000170893|ENST00000302649|TRH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.79290771484375	2	502.26601	1002.51747	-0.27634	-0.0001388	-1.8071	-0.00090765	-2.0834	-0.0010464	502.7668944122634	64.393	0.50855	64.158	63.982	64.49	-0.2345					21	12	2	0	0	0	0.024466	1	7293	7293		25.45	0	1	146860			75418	8090	52556	52644	82993	82993					0.016309729028421316
SPWPLGDPPRP	11	Unmodified	_SPWPLGDPPRP_					0	0	0		ENST00000564834.1_1_7:152161405-152161798:+|nuORF	ENST00000564834.1_1_7:152161405-152161798:+|nuORF	ENST00000564834.1_1_7:152161405-152161798:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.87896728515625	3	406.880379	1217.61931	1.3745	0.00055926	-4.3776	-0.0017812	-3.0031	-0.0012219	406.8785851414845	19.621	1.0542	19.621	19.366	20.42	0					59	21	4	0	0	0	0.99147	1	457	457		38.714	4.6276	1	1239200			75419	16907	52557	52645	82994	82994					0.019202192546117658
SPYGNYII	8	Unmodified	_SPYGNYII_					0	0	0			REV__ENSG00000204020|ENST00000404459|LIPN	REV__ENSG00000204020|ENST00000404459|LIPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.75048828125	2	463.734543	925.454533	-0.070049	-3.2484E-05	1.8143	0.00084137	1.7443	0.00080888	463.73357358058905	49.726	0.18432	49.801	49.693	49.877	0.074196					6	4	2	0	0	0	0.027866	1	5077	5077		47.916	7.343	1	104730	+		75420	28560	52558	52646	82995	82995					-0.011175928851912431
SPYLCLLRTWC	11	Unmodified	_SPYLCLLRTWC_					0	0	0		ENST00000480317.1_1_X:47487885-47489273:-|nuORF	ENST00000480317.1_1_X:47487885-47489273:-|nuORF	ENST00000480317.1_1_X:47487885-47489273:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2665710449219	3	452.226393	1353.65735	-0.18554	-8.3908E-05	-2.2219	-0.0010048	-2.4075	-0.0010887	452.2253774482348	25.232	0.72187	25.061	24.692	25.413	-0.17078					29	16	3	0	0	0	0.024759	1	1181	1181		17.833	0	1	233130			75421	15193	52559	52647	82996	82996					-0.0053335414656885405
SPYLCLLRTWC	11	Unmodified	_SPYLCLLRTWC_					0	0	0		ENST00000480317.1_1_X:47487885-47489273:-|nuORF	ENST00000480317.1_1_X:47487885-47489273:-|nuORF	ENST00000480317.1_1_X:47487885-47489273:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	452.226393	1353.65735	-0.33014	-0.0001493	-2.2353	-0.0010109	-2.5655	-0.0011602	452.2257259224418	25.085	0.44382	25.085	24.919	25.363	0	-0.066025	-0.0001213	NaN	23.378	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155130			75422	15193	52559	52647							-0.0053335414656885405
SPYLRPLTL	9	Unmodified	_SPYLRPLTL_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.3131713867188	2	530.313492	1058.61243	-0.7324	-0.0003884	0.073022	3.8724E-05	-0.65938	-0.00034968	530.31350938746	64.518	0.85314	64.518	64.238	65.091	0					71	22	5	0	0	0	0.015512	4	7590	7579;7590;7601;7617		159.28	55.219	1	11629000			75423	9281	52560	52648	82997;82998;82999;83000	82998					0.08546906374044738
SPYLRPLTL	9	Unmodified	_SPYLRPLTL_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.3132934570312	2	530.313492	1058.61243	-1.4398	-0.00076353	0.99667	0.00052855	-0.44311	-0.00023499	530.3139880135244	64.816	0.93493	64.553	64.304	65.239	-0.2626					82	24	5	0	0	0	0.016542	4	7613	7592;7602;7613;7629		154.12	55.791	1	10442000			75424	9281	52560	52648	83001;83002;83003;83004	83003					0.08546906374044738
SPYLRPLTL	9	Unmodified	_SPYLRPLTL_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.3128051757812	2	530.313492	1058.61243	-0.23045	-0.00012221	-0.50514	-0.00026788	-0.73559	-0.00039009	530.3131163463446	64.498	0.96716	64.543	64.262	65.229	0.045502					75	25	4	0	0	0	0.014918	4	7523	7501;7511;7523;7539		162.25	62.259	1	12036000			75425	9281	52560	52648	83005;83006;83007;83008	83007					0.08546906374044738
SPYLRPLTL	9	Unmodified	_SPYLRPLTL_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.3131103515625	2	530.313492	1058.61243	-0.60611	-0.00032143	0.28149	0.00014928	-0.32462	-0.00017215	530.3134809630175	64.743	0.87757	64.509	64.256	65.133	-0.2345					53	21	4	0	0	0	0.086035	3	7369	7359;7369;7383		115.49	25.124	1	4450000			75426	9281	52560	52648	83009;83010;83011	83010					0.08546906374044738
SPYLRPLTL	9	Unmodified	_SPYLRPLTL_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.3125610351562	2	530.313492	1058.61243	-0.94687	-0.00050214	0.67507	0.000358	-0.2718	-0.00014414	530.3137055096089	64.706	0.7186	64.504	64.263	64.982	-0.20254					50	17	4	0	0	0	0.053401	3	7362	7362;7373;7384		127.46	29.989	1	4103100			75427	9281	52560	52648	83012;83013;83014	83012					0.08546906374044738
SPYLRPLTL	9	Unmodified	_SPYLRPLTL_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.3137817382812	2	530.313492	1058.61243	-0.55053	-0.00029196	0.073695	3.9082E-05	-0.47684	-0.00025287	530.3133610431964	64.751	0.62984	64.496	64.23	64.86	-0.25563					45	15	4	0	0	0	0.079716	4	7372	7350;7360;7372;7387		117.81	24.714	1	5066100			75428	9281	52560	52648	83015;83016;83017;83018	83017					0.08546906374044738
SPYVPPMSQ	9	Unmodified	_SPYVPPMSQ_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7870788574219	2	503.239135	1004.46372	-1.2745	-0.00064138	1.6378	0.00082422	0.36333	0.00018284	503.2406466415438	37.617	0.38382	37.408	37.232	37.616	-0.2092					15	9	2	0	0	0	0.024288	1	3015	3015		44.377	17.684	1	67401	+		75429	23218	52561	52649	83019	83019					-0.038335675911639555
SQADTEQKY	9	Unmodified	_SQADTEQKY_					0	0	0		ENST00000538862.6_1_12:6960604-6960844:-|nuORF	ENST00000538862.6_1_12:6960604-6960844:-|nuORF	ENST00000538862.6_1_12:6960604-6960844:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7670288085938	2	535.24346	1068.47237	-0.59862	-0.00032041	-0.89931	-0.00048135	-1.4979	-0.00080175	535.2422812703015	30.348	0.37651	30.199	29.967	30.344	-0.14952					10	8	2	0	0	0	0.024209	1	1908	1908		47.657	0	1	54644			75430	16393	52562	52650	83020	83020					-0.05912922420998257
SQADVHRQI	9	Unmodified	_SQADVHRQI_					0	0	0		ENSG00000104856|ENST00000221452|RELB;ENST00000509229.1_1_19:45535724-45537626:+|nuORF	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.275390625	2	527.275429	1052.53631	-1.1843	-0.00062445	0.50047	0.00026389	-0.68382	-0.00036056	527.2756839155551	24.32	0.88416	24.32	24.08	24.964	0					41	19	3	0	0	0	0.51662	1	1065	1065		58.246	7.0535	1	1193800			75431	2608	52563	52651	83021	83021					0.012139025266151293
SQADVHRQI	9	Unmodified	_SQADVHRQI_					0	0	0		ENSG00000104856|ENST00000221452|RELB;ENST00000509229.1_1_19:45535724-45537626:+|nuORF	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.275390625	2	527.275429	1052.53631	-1.3541	-0.00071396	0.87202	0.00045979	-0.48204	-0.00025417	527.2758115302189	24.333	1.0234	24.286	24	25.024	-0.047148					35	22	2	0	0	0	0.29609	2	1040	1040;1054		76.17	19.307	1	1289600			75432	2608	52563	52651	83022;83023	83022					0.012139025266151293
SQADVHRQI	9	Unmodified	_SQADVHRQI_					0	0	0		ENSG00000104856|ENST00000221452|RELB;ENST00000509229.1_1_19:45535724-45537626:+|nuORF	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.2750244140625	2	527.275429	1052.53631	0.249	0.00013129	-0.53751	-0.00028341	-0.28851	-0.00015212	527.2749604440364	24.179	0.81974	24.257	24.003	24.823	0.078344					60	17	6	0	0	0	0.18694	3	974	974;983;998		91.265	36.489	1	1307300			75433	2608	52563	52651	83024;83025;83026	83024					0.012139025266151293
SQADVHRQV	9	Unmodified	_SQADVHRQV_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENSG00000162924|ENST00000394479|REL;ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2670288085938	2	520.267604	1038.52066	-1.5666	-0.00081507	0.71616	0.00037259	-0.85047	-0.00044247	520.2679631185694	20.544	1.1669	20.544	20.028	21.195	0					55	23	4	0	0	0	0.28047	2	547	547;559		78.264	27.071	1	812800			75434	16261;7011	52564	52652	83027;83028	83027					0.002936160095487139
SQADVHRQV	9	Unmodified	_SQADVHRQV_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENSG00000162924|ENST00000394479|REL;ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2667846679688	2	520.267604	1038.52066	-0.59455	-0.00030933	0.030509	1.5873E-05	-0.56404	-0.00029345	520.2674793584131	20.784	0.8666	20.68	20.227	21.094	-0.10477					34	17	3	0	0	0	0.49102	1	575	575		59.931	3.2097	1	345570			75435	16261;7011	52564	52652	83029	83029					0.002936160095487139
SQAEATRH	8	Unmodified	_SQAEATRH_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2197570800781	2	450.220123	898.425693	-0.23387	-0.00010529	0.37849	0.00017041	0.14462	6.5112E-05	450.2201553436999	26.105	1.4051	25.936	25.737	27.142	-0.16816					87	36	3	0	0	0	0.93437	2	1344	1321;1344		47.657	1.7054	1	4348800	+		75436	28866	52565	52653	83030;83031	83031					-0.027583174616324868
SQAEATRH	8	Unmodified	_SQAEATRH_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.220123	898.425693	-0.44546	-0.00020056	0.55038	0.00024779	0.10491	4.7234E-05	450.22022579140867	26.287	1.7989	26.051	25.803	27.602	-0.23603	0.066666	-0.0001417	NaN	47.657	97	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3332300	+		75437	28866	52565	52653							-0.027583174616324868
SQAEATRH	8	Unmodified	_SQAEATRH_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	450.220123	898.425693	-0.23387	-0.00010529	0.37849	0.00017041	0.14462	6.5112E-05	450.2201553436999	26.105	1.4051	25.936	25.737	27.142	-0.16816	-0.048184	-0.00029648	NaN	47.657	87	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4348800	+		75438	28866	52565	52653							-0.027583174616324868
SQAEATRH	8	Unmodified	_SQAEATRH_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.220123	898.425693	-1.0278	-0.00046273	1.109	0.00049927	0.081163	3.6541E-05	450.2204735584442	26.129	1.3358	25.966	25.631	26.967	-0.16331	-0.018483	0.00036126	NaN	47.657	93	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4919300	+		75439	28866	52565	52653							-0.027583174616324868
SQAEIEQKI	9	Unmodified	_SQAEIEQKI_					0	0	0		nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1;nc|ENSG00000068028|Q9NS23-9|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.279541015625	2	523.279846	1044.54514	-1.1657	-0.00061	-0.043585	-2.2807E-05	-1.2093	-0.00063281	523.2797481452636	38.776	1.1211	38.776	38.473	39.594	0					66	30	3	0	0	0	0.013719	4	3272	3260;3272;3284;3298		168.26	47.39	1	11163000			75440	1375	52566	52654	83032;83033;83034;83035	83033					0.02464831372435583
SQAEIEQKI	9	Unmodified	_SQAEIEQKI_					0	0	0		nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1;nc|ENSG00000068028|Q9NS23-9|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2791748046875	2	523.279846	1044.54514	-0.65054	-0.00034041	-0.82227	-0.00043028	-1.4728	-0.00077069	523.27952471741	38.719	1.3133	38.62	38.201	39.514	-0.098755					96	35	5	0	0	0	0.013946	4	3260	3239;3247;3260;3272		181.41	53.945	1	10729000			75441	1375	52566	52654	83036;83037;83038;83039	83038					0.02464831372435583
SQAEIEQKI	9	Unmodified	_SQAEIEQKI_					0	0	0		nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1;nc|ENSG00000068028|Q9NS23-9|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2803955078125	2	523.279846	1044.54514	-1.1575	-0.00060568	-0.42327	-0.00022149	-1.5807	-0.00082716	523.2797312678019	38.914	1.2396	38.941	38.572	39.812	0.027237					94	33	5	0	0	0	0.013719	4	3226	3226;3239;3251;3263		168.26	47.39	1	11073000			75442	1375	52566	52654	83040;83041;83042;83043	83040					0.02464831372435583
SQAEVARDKLQ	11	Unmodified	_SQAEVARDKLQ_					0	0	0			REV__ENSG00000121957|ENST00000264126|GPSM2	REV__ENSG00000121957|ENST00000264126|GPSM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.56011962890625	3	415.557964	1243.65206	2.6839	0.0011153	1.3252	0.00055072	4.0091	0.001666	415.5583863752721	18.629	1.1778	18.629	18.333	19.511	0					50	23	3	0	0	0	1.0764	1	326	326		17.833	0.6664	1	153560	+		75443	22621	52567	52655	83044	83044					0.039983815868026795
SQAGLFRLW	9	Unmodified	_SQAGLFRLW_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000540987.1_1_12:133225370-133225942:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.818359375	2	539.295633	1076.57671	-0.17411	-9.3898E-05	2.3288	0.0012559	2.1547	0.001162	539.2958535994151	74.769	0.71211	74.493	74.176	74.888	-0.27573					42	16	4	0	0	0	0.024344	1	8833	8833		54.776	15.97	1	1626500			75444	8705	52568	52656	83045	83045					0.04148868917036452
SQAGLFRLW	9	Unmodified	_SQAGLFRLW_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000540987.1_1_12:133225370-133225942:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.81787109375	2	539.295633	1076.57671	-0.21926	-0.00011825	1.6818	0.000907	1.4626	0.00078875	539.2957492234597	74.771	0.88818	74.507	74.098	74.986	-0.26326					50	20	4	0	0	0	0.024288	1	8831	8831		62.107	7.3311	1	1874100			75445	8705	52568	52656	83046	83046					0.04148868917036452
SQAGLFRLW	9	Unmodified	_SQAGLFRLW_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000540987.1_1_12:133225370-133225942:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8182373046875	2	539.295633	1076.57671	-0.31402	-0.00016935	1.9221	0.0010366	1.6081	0.00086724	539.2958031864462	74.54	0.88493	74.357	74.094	74.979	-0.18278					30	20	2	0	0	0	0.024344	1	8812	8812		45.972	12.479	1	1604500			75446	8705	52568	52656	83047	83047					0.04148868917036452
SQAHHLALPS	10	Unmodified	_SQAHHLALPS_					0	0	0			REV__ENST00000518219.5_1_5:179266615-179266723:-|nuORF	REV__ENST00000518219.5_1_5:179266615-179266723:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.2662963867188	2	530.780348	1059.54614	0.12236	6.4947E-05	-1.5537	-0.00082467	-1.4313	-0.00075972	530.7793476413561	17.195	0.38036	17.052	16.895	17.276	-0.14278					11	8	2	0	0	0	0.03519	1	138	138		20.947	2.6225	1	28755	+		75447	34227	52569	52657	83048	83048					0.018750905319848243
SQAILLNTT	9	Unmodified	_SQAILLNTT_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7897644042969	2	480.771657	959.528761	0.25024	0.00012031	-0.40801	-0.00019616	-0.15776	-7.5849E-05	480.77134425586615	33.478	1.399	33.247	32.627	34.026	-0.23107					64	34	3	0	0	0	0.024484	1	2459	2459		17.468	0	1	817580	+		75448	25554	52570	52658	83049	83049					0.04737750206322744
SQAIVKVVI	9	Unmodified	_SQAIVKVVI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.8118591308594	2	478.810585	955.606617	0.4511	0.00021599	-0.2098	-0.00010045	0.2413	0.00011554	478.81034082613365	57.365	0.49267	57.365	57.111	57.603	0					37	12	4	0	0	0	0.26413	1	6454	6454		80.455	25.678	1	3937200			75449	18451	52571	52659	83050	83050					0.12703807862362737
SQAIVKVVI	9	Unmodified	_SQAIVKVVI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.8125915527344	2	478.810585	955.606617	0.58778	0.00028144	-0.33464	-0.00016023	0.25315	0.00012121	478.8103269110133	57.618	0.60583	57.444	57.149	57.755	-0.1749					40	15	4	0	0	0	0.33603	1	6449	6449		70.816	30.038	1	3176000			75450	18451	52571	52659	83051	83051					0.12703807862362737
SQAIVKVVI	9	Unmodified	_SQAIVKVVI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.810585	955.606617	-0.35835	-0.00017158	0.80301	0.00038449	0.44466	0.00021291	478.8108018731585	57.315	0.51974	57.411	57.088	57.608	0.095306	0.0045065	0.00076708	NaN	80.455	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3817000			75451	18451	52571	52659							0.12703807862362737
SQALKGNLY	9	Unmodified	_SQALKGNLY_					0	0	0		ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENST00000468439.2_1_3:132106687-132107131:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.75604248046875	2	497.271824	992.529095	-0.4773	-0.00023735	0.36478	0.0001814	-0.11252	-5.5952E-05	497.27175271051425	39.435	0.38953	39.212	39.073	39.462	-0.22311					22	9	3	0	0	0	0.024473	1	3335	3335		41.427	13.172	1	327900			75452	14870	52572	52660	83052	83052					0.03253169926188093
SQALTLLPQ	9	Unmodified	_SQALTLLPQ_					0	0	0			REV__ENST00000329117.9_1_1:156611886-156611988:+|nuORF	REV__ENST00000329117.9_1_1:156611886-156611988:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7789001464844	2	485.782025	969.549496	-0.68434	-0.00033244	-0.22207	-0.00010788	-0.90641	-0.00044032	485.7815158677204	56.542	0.33313	56.377	56.201	56.535	-0.16431					11	8	2	0	0	0	0.024418	1	6285	6285		23.523	0	1	182730	+		75453	30443	52573	52661	83053	83053					0.06350340586004677
SQAMLTKLASW	11	Unmodified	_SQAMLTKLASW_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.5543518066406	3	412.553274	1234.63799	-0.93948	-0.00038758	3.8721	0.0015974	2.9326	0.0012098	412.5548468362831	37.759	0.79551	37.541	37.223	38.019	-0.21848					53	21	4	0	0	0	0.97516	1	3055	3055		42.338	6.0204	1	1980600	+		75454	28263	52574	52662	83054	83054					0.03006012834134708
SQANIAQVL	9	Unmodified	_SQANIAQVL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2633972167969	2	472.263999	942.513445	-0.20487	-9.6755E-05	-0.51089	-0.00024128	-0.71577	-0.00033803	472.26375634482406	62.706	1.282	62.706	62.384	63.666	0					81	33	3	0	0	0	0.1158	4	7301	7289;7301;7313;7325		107.01	18.888	1	18474000			75455	2165	52575	52663	83055;83056;83057;83058	83056					0.03988883409135724
SQANIAQVL	9	Unmodified	_SQANIAQVL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2636413574219	2	472.263999	942.513445	-0.33861	-0.00015991	-0.28558	-0.00013487	-0.62419	-0.00029478	472.2638682529035	62.95	1.3012	62.71	62.37	63.671	-0.23926					118	34	5	0	0	0	0.14024	2	7313	7301;7313		101.6	10.838	1	18045000			75456	2165	52575	52663	83059;83060	83060					0.03988883409135724
SQANIAQVL	9	Unmodified	_SQANIAQVL_					0	0	0		ZNRF3-AP1B1|4|fusion;ZNRF3-AP1B1|3|fusion;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ZNRF3-AP1B1|2|fusion;ZNRF3-AP1B1|1|fusion;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	ZNRF3-AP1B1|4|fusion	ZNRF3-AP1B1|4|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.26312255859375	2	472.263999	942.513445	0.45136	0.00021316	-1.1079	-0.0005232	-0.65651	-0.00031004	472.2634781202726	62.647	1.4688	62.709	62.201	63.67	0.062767					109	38	5	0	0	0	0.086035	2	7211	7211;7223		115.49	21.488	1	18436000			75457	2165	52575	52663	83061;83062	83061					0.03988883409135724
SQANVVVKI	9	Unmodified	_SQANVVVKI_					0	0	0		ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2906188964844	2	479.290017	956.565481	0.73121	0.00035046	-0.69211	-0.00033172	0.039094	1.8737E-05	479.2894205687062	47.237	0.62489	47.084	46.817	47.441	-0.153					38	16	3	0	0	0	0.013293	2	4708	4696;4708		176.09	80.272	1	3190700			75458	2151	52576	52664	83063;83064	83064					0.0854604682289164
SQANVVVKI	9	Unmodified	_SQANVVVKI_					0	0	0		ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.29095458984375	2	479.290017	956.565481	-0.51624	-0.00024743	0.40698	0.00019506	-0.10926	-5.2367E-05	479.2899763182478	47.04	0.81909	47.099	46.766	47.585	0.059097					47	22	3	0	0	0	0.014918	2	4627	4627;4640		162.25	68.246	1	2871800			75459	2151	52576	52664	83065;83066	83065					0.0854604682289164
SQAPLRKN	8	Unmodified	_SQAPLRKN_					0	0	0		ENST00000480340.1_1_1:153902104-153902251:-|nuORF	ENST00000480340.1_1_1:153902104-153902251:-|nuORF	ENST00000480340.1_1_1:153902104-153902251:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.264404296875	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0516	1	9667	9667		29.15	0	1	3503800			75460	15195	52577	52665	83067	83067					0.05435722848858404
SQAPVLDAI	9	Unmodified	_SQAPVLDAI_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2531433105469	2	457.2531	912.491647	0.27775	0.000127	-1.4711	-0.00067267	-1.1934	-0.00054566	457.2529718762196	67.965	0.9841	67.677	67.347	68.331	-0.28834					74	24	5	0	0	0	0.03201	1	8097	8097		139.97	25.385	1	1688500			75461	7065	52578	52666	83068	83068					0.03190078660554718
SQAPVLDAI	9	Unmodified	_SQAPVLDAI_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2528991699219	2	457.2531	912.491647	0.57009	0.00026067	-1.7235	-0.00078809	-1.1534	-0.00052741	457.2528203261498	67.72	1.1882	67.742	67.387	68.576	0.022049					73	30	4	0	0	0	0.086035	1	8019	8019		115.49	5.1568	1	1770900			75462	7065	52578	52666	83069	83069					0.03190078660554718
SQAPVLDAI	9	Unmodified	_SQAPVLDAI_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.2531	912.491647	0.60763	0.00027784	-1.9652	-0.00089859	-1.3576	-0.00062075	457.2527903646842	67.683	1.6521	67.683	67.285	68.938	0	-0.017591	-0.0002098	NaN	139.97	90	42	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2024600			75463	7065	52578	52666							0.03190078660554718
SQARFGQSV	9	Unmodified	_SQARFGQSV_					0	0	0		ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2503356933594	2	490.251423	978.488293	-0.61513	-0.00030157	0.036711	1.7998E-05	-0.57842	-0.00028357	490.2513506166168	33.027	0.63496	33.027	32.753	33.388	0					41	16	3	0	0	0	0.080494	1	2348	2348		117.53	35.285	1	1995700			75464	7536	52579	52667	83070	83070					-0.001811713934216641
SQARFGQSV	9	Unmodified	_SQARFGQSV_					0	0	0		ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2507629394531	2	490.251423	978.488293	-0.66538	-0.0003262	0.16347	8.0141E-05	-0.50191	-0.00024606	490.25137450105393	32.86	0.69918	32.866	32.589	33.288	0.0066261					50	18	4	0	0	0	0.050291	1	2308	2308		128.6	46.362	1	2146700			75465	7536	52579	52667	83071	83071					-0.001811713934216641
SQARFGQSV	9	Unmodified	_SQARFGQSV_					0	0	0		ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	490.251423	978.488293	-0.15204	-7.4536E-05	-0.27117	-0.00013294	-0.4232	-0.00020748	490.25116192904335	32.686	0.75355	32.749	32.428	33.182	0.062885	-0.13175	-0.00021691	NaN	128.6	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1884700			75466	7536	52579	52667							-0.001811713934216641
SQARFLLSK	9	Unmodified	_SQARFLLSK_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.818603515625	2	525.308741	1048.60293	-0.16408	-8.6192E-05	3.4362	0.0018051	3.2721	0.0017189	525.310535596286	71.396	0.80382	71.396	71.065	71.869	0					29	20	2	0	0	0	0.024466	1	8604	8604		31.53	4.8369	1	2047100			75467	2261;2309	52580	52668	83072	83072					0.08057138088520333
SQARFLLSK	9	Unmodified	_SQARFLLSK_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000100934|ENST00000307712|SEC23A;ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.308741	1048.60293	0.22874	0.00012016	3.0723	0.0016139	3.301	0.001734	525.3102670110521	71.472	0.45184	71.483	71.239	71.691	0.010735	0.04331	-0.00024526	NaN	18.262	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1957000			75468	2261;2309	52580	52668							0.08057138088520333
SQASFLGAEEV	11	Unmodified	_SQASFLGAEEV_					0	0	0		ENST00000359236.9_1_12:118541400-118541646:-|nuORF	ENST00000359236.9_1_12:118541400-118541646:-|nuORF	ENST00000359236.9_1_12:118541400-118541646:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2780151367188	2	569.274761	1136.53497	0.35332	0.00020114	2.9973	0.0017063	3.3507	0.0019074	569.2763297868746	79.783	1.254	79.564	79.118	80.372	-0.21923					86	29	4	0	0	0	0.90172	1	9582	9582		51.528	0.1923	1	1560400			75469	12732	52581	52669	83073	83073					-0.02783776352816858
SQASNLLL	8	Unmodified	_SQASNLLL_					0	0	0			REV__ENSG00000137221|ENST00000372449|TJAP1	REV__ENSG00000137221|ENST00000372449|TJAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5130920410156	2	423.239993	844.465432	-0.1053	-4.4566E-05	-0.49086	-0.00020775	-0.59616	-0.00025232	423.23941121371524	31.67	0.75771	31.739	31.486	32.244	0.068962					41	18	4	0	0	0	0.027866	1	2123	2123		30.504	0	1	275810	+		75470	23738	52582	52670	83074	83074					0.03697809489096926
SQATKLKP	8	Unmodified	_SQATKLKP_					0	0	0		ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000151693|O43150-2|ASAP2	ENSG00000151693|ENST00000281419|ASAP2	ENSG00000151693|ENST00000281419|ASAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	436.21185302734375	2	436.763635	871.512717	0.34721	0.00015165	-0.065076	-2.8423E-05	0.28213	0.00012322	436.7634366505041	42.656	0.83115	42.656	42.355	43.186	0					55	22	4	0	0	0	0.027866	1	3944	3944		37.159	8.0096	1	2299600			75471	6222	52583	52671	83075	83075					0.07182088760077932
SQAVILSQL	9	Unmodified	_SQAVILSQL_					0	0	0		ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	ENSG00000171199|ENST00000399575|OPRPN	MSMS	OPSCC_39_ClassI_Rep-2	2	479.7806396484375	2	479.782025	957.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.144	1	46.991	46.491	47.491	-0.15301								0	0	0	0.15405	1	4685	4685		80.455	5.4113	1				75472	8125	52584	52672	83076	83076					0.06902340586009359
SQAWHSMTVW	10	Unmodified	_SQAWHSMTVW_					0	0	0		nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.56304931640625	3	411.522086	1231.54443	0.25354	0.00010434	1.9156	0.00078829	2.1691	0.00089263	411.5233563059654	32.993	0.69201	32.793	32.285	32.977	-0.20019					25	16	2	0	0	0	0.03519	1	2241	2241		19.263	0	1	229360			75473	6693	52585	52673	83077	83077					-0.06208286548280739
SQCDPHIVLL	10	Unmodified	_SQCDPHIVLL_					0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2257690429688	2	562.792066	1123.56958	0.23612	0.00013289	0.67821	0.00038169	0.91433	0.00051458	562.791833524396	56.395	0.46963	56.179	55.998	56.468	-0.21607					20	11	3	0	0	0	0.03519	1	6145	6145		45.972	5.3996	1	486190	+		75474	28710	52586	52674	83078	83078					0.012737682543047413
SQCHRSPL	8	Unmodified	_SQCHRSPL_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7695007324219	2	464.226894	926.439234	-0.193	-8.9596E-05	-4.0837	-0.0018958	-4.2767	-0.0019854	464.224830698677	63.152	1.2611	63.152	62.729	63.99	0					44	33	2	0	0	0	0.027866	1	7411	7411		31.955	8.9124	1	240180			75475	10965	52587	52675	83079	83079					-0.02692782954034101
SQCILHGEEDD	11	Unmodified	_SQCILHGEEDD_					0	0	0			REV__ENSG00000013441|ENST00000321356|CLK1	REV__ENSG00000013441|ENST00000321356|CLK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2460021972656	3	415.83992	1244.49793	-0.26122	-0.00010862	-2.0125	-0.0008369	-2.2738	-0.00094552	415.83899199907296	28.441	1.2108	28.289	28	29.211	-0.15195					72	28	4	0	0	0	0.024757	1	1672	1672		28.577	0	1	1483200	+		75476	19957	52588	52676	83080	83080					-0.1145381596088555
SQCILHGEEDD	11	Unmodified	_SQCILHGEEDD_					0	0	0			REV__ENSG00000013441|ENST00000321356|CLK1	REV__ENSG00000013441|ENST00000321356|CLK1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	415.83992	1244.49793	-1.3333	-0.00055443	-0.63807	-0.00026534	-1.9714	-0.00081977	415.83949848682977	28.549	1.0142	28.304	28.041	29.055	-0.24524	0.028021	0.00091801	NaN	28.577	64	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1472700	+		75477	19957	52588	52676							-0.1145381596088555
SQCLHIQSL	9	Unmodified	_SQCLHIQSL_					0	0	0		PLXNB3|p.H524Q|1|0.33|ENSG00000198753|chrX:153769882-153769882|C/G|missense_variant	PLXNB3|p.H524Q|1|0.33|ENSG00000198753|chrX:153769882-153769882|C/G|missense_variant	PLXNB3|p.H524Q|1|0.33|ENSG00000198753|chrX:153769882-153769882|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7346801757812	2	514.763309	1027.51206	-0.23388	-0.0001204	-1.3425	-0.00069107	-1.5764	-0.00081147	514.7614632759986	41.556	0.37474	41.42	41.255	41.629	-0.13553					18	9	3	0	0	0	0.024541	1	3710	3710		17.468	0	1	154250			75478	18975	52589	52677	83081	83081					-0.0005907395125177572
SQCLLVPK	8	Unmodified	_SQCLLVPK_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|323|3|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|323|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.188720703125	2	444.254588	886.494624	-0.10199	-4.531E-05	3.2288	0.0014344	3.1268	0.0013891	444.25612417002486	32.728	0.52342	32.565	32.358	32.881	-0.16292					17	12	2	0	0	0	0.027866	1	2307	2307		30.504	8.5438	1	122580	+		75479	36127	52590	52678	83082	83082					0.04683630513727621
SQCLLVPK	8	Unmodified	_SQCLLVPK_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|323|3|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|323|3|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	444.254588	886.494624	-0.25817	-0.00011469	2.5215	0.0011202	2.2633	0.0010055	444.25575115699655	32.787	0.45155	32.554	32.382	32.833	-0.23236	-0.0055262	-0.00036262	NaN	23.042	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65855	+		75480	36127	52590	52678							0.04683630513727621
SQCSKPSVI	9	Unmodified	_SQCSKPSVI_					0	0	0		ENSG00000276085|ENST00000619989|CCL3L3	ENSG00000276085|ENST00000619989|CCL3L3	ENSG00000276085|ENST00000619989|CCL3L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.26568603515625	2	474.744585	947.474617	-0.03672	-1.7433E-05	0.39624	0.00018811	0.35952	0.00017068	474.74442982670655	44.301	0.30138	44.337	44.241	44.542	0.0369					11	8	2	0	0	0	0.024313	1	4141	4141		51.193	3.5354	1	113030			75481	11046	52591	52679	83083	83083					-0.001221652168737819
SQCSKPSVI	9	Unmodified	_SQCSKPSVI_					0	0	0		ENSG00000276085|ENST00000619989|CCL3L3	ENSG00000276085|ENST00000619989|CCL3L3	ENSG00000276085|ENST00000619989|CCL3L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	474.744585	947.474617	0.028615	1.3585E-05	0.36288	0.00017228	0.3915	0.00018586	474.7444605410493	44.58	0.3436	44.58	44.348	44.691	0	0.12145	-1.4158E-05	NaN	35.152	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73050			75482	11046	52591	52679							-0.001221652168737819
SQCVCEKGEL	10	Unmodified	_SQCVCEKGEL_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.8146362304688	2	548.244092	1094.47363	-1.1434	-0.00062684	1.115	0.0006113	-0.028339	-1.5537E-05	548.2445527588935	52.065	0.89458	52.156	51.894	52.788	0.091942					47	22	3	0	0	0	0.03519	1	5468	5468		47.96	22.385	1	1254500			75483	18639	52592	52680	83084	83084					-0.06982747648089571
SQDAGILHR	9	Unmodified	_SQDAGILHR_					0	0	0		ENST00000251101.11_1_18:691232-697243:-|nuORF;nc|ENSG00000132199|Q7L5Y1-3|ENOSF1	ENST00000251101.11_1_18:691232-697243:-|nuORF	ENST00000251101.11_1_18:691232-697243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.77471923828125	2	498.764697	995.514842	-0.17194	-8.5758E-05	-3.0194	-0.001506	-3.1914	-0.0015917	498.7629891880335	100.85	0.80447	100.86	100.58	101.38	0.0090332					38	18	3	0	0	0	0.024261	1	12859	12859		54.776	21.964	1	297240			75484	11350	52593	52681	83085	83085					0.01690517497900146
SQDHDCLAANL	11	Unmodified	_SQDHDCLAANL_					0	0	0			REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.2982177734375	2	593.761494	1185.50844	-0.75348	-0.00044739	3.819	0.0022676	3.0655	0.0018202	593.7634344918962	62.364	0.35078	62.15	61.932	62.283	-0.21399					16	8	3	0	0	0	0.024741	1	7032	7032		23.523	3.5259	1	169700	+		75485	26870	52594	52682	83086	83086					-0.07689788515767759
SQDILLKW	8	Unmodified	_SQDILLKW_					0	0	0		ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.28619384765625	2	501.784567	1001.55458	0.05526	2.7729E-05	-0.75573	-0.00037921	-0.70047	-0.00035148	501.7839443871086	63.083	0.88304	62.862	62.489	63.372	-0.22097					49	22	3	0	0	0	0.74904	1	7126	7126		63.306	0	1	2332600			75486	7419	52595	52683	83087	83087					0.05386644448617517
SQDKTTQKT	9	Unmodified	_SQDKTTQKT_					0	0	0			REV__ENSG00000217128|ENST00000510461|FNIP1	REV__ENSG00000217128|ENST00000510461|FNIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7862548828125	2	518.767103	1035.51965	-0.96763	-0.00050197	3.7962	0.0019694	2.8286	0.0014674	518.7688635483912	44.022	0.88788	43.918	43.661	44.549	-0.10468					58	23	4	0	0	0	0.024397	1	4171	4171		31.53	0	1	1886600	+		75487	28820	52596	52684	83088	83088					0.003313568500061592
SQDKTTQKT	9	Unmodified	_SQDKTTQKT_					0	0	0			REV__ENSG00000217128|ENST00000510461|FNIP1	REV__ENSG00000217128|ENST00000510461|FNIP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.767103	1035.51965	-0.9077	-0.00047089	3.7453	0.0019429	2.8376	0.001472	518.7689152595992	44.214	0.60968	43.995	43.709	44.319	-0.21938	0.034782	6.5211E-06	NaN	58.23	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1885200	+		75488	28820	52596	52684							0.003313568500061592
SQDPGTHVV	9	Unmodified	_SQDPGTHVV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.23040771484375	2	470.230156	938.445759	-0.93026	-0.00043744	0.92902	0.00043685	-0.0012382	-5.8223E-07	470.23049289906874	29.998	0.77606	29.998	29.732	30.508	0					27	18	2	0	0	0	0.19099	1	1893	1893		90.37	8.0648	1	1086300			75489	4473	52597	52685	83089	83089					-0.025925665216618654
SQDPGTHVV	9	Unmodified	_SQDPGTHVV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.230224609375	2	470.230156	938.445759	-0.24705	-0.00011617	0.14648	6.8878E-05	-0.10057	-4.7293E-05	470.23014875081225	29.973	0.77717	29.982	29.637	30.414	0.0086708					29	18	2	0	0	0	0.26966	1	1876	1876		79.713	2.9384	1	1040100			75490	4473	52597	52685	83090	83090					-0.025925665216618654
SQDPGTHVV	9	Unmodified	_SQDPGTHVV_					0	0	0		ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.23052978515625	2	470.230156	938.445759	-0.27604	-0.0001298	0.28543	0.00013422	0.0093874	4.4143E-06	470.23020464259207	29.587	0.89072	29.665	29.45	30.341	0.078344					32	21	2	0	0	0	0.14024	1	1781	1781		101.6	16.44	1	991320			75491	4473	52597	52685	83091	83091					-0.025925665216618654
SQDWFHNV	8	Unmodified	_SQDWFHNV_					0	0	0			REV__ENSG00000187535|ENST00000426508|IFT140	REV__ENSG00000187535|ENST00000426508|IFT140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7822875976562	2	516.730323	1031.44609	0.072643	3.7537E-05	-1.5737	-0.00081317	-1.501	-0.00077563	517.2291459384785	71.754	0.15554	71.479	71.394	71.549	-0.27509					5	3	2	0	0	0	0.027866	1	8378	8378		17.365	0	1	52963	+		75492	27940	52598	52686	83092	83092					-0.06837146801808558
SQDYQCLMT	9	Unmodified	_SQDYQCLMT_					0	0	0		DENND5B|p.R305C|1|0.18|ENSG00000170456|chr12:31460373-31460373|G/A|missense_variant	DENND5B|p.R305C|1|0.18|ENSG00000170456|chr12:31460373-31460373|G/A|missense_variant	DENND5B|p.R305C|1|0.18|ENSG00000170456|chr12:31460373-31460373|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8196411132812	2	544.722992	1087.43143	-1.5043	-0.00081945	3.9997	0.0021787	2.4954	0.0013593	544.7249715513185	47.368	1.1163	47.427	46.623	47.739	0.059093					54	31	2	0	0	0	0.024427	1	4726	4726		34.173	0	1	308070			75493	633	52599	52687	83093	83093					-0.10878723056475792
SQEAGLLAR	9	Unmodified	_SQEAGLLAR_					0	0	0			REV__ENST00000378567.7_1_1:2116514-2116796:+|nuORF	REV__ENST00000378567.7_1_1:2116514-2116796:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7741394042969	2	472.761623	943.508694	1.6821	0.00079524	-2.4074	-0.0011381	-0.72533	-0.00034291	472.7602166340337	36.971	0.38984	36.971	36.805	37.195	0					14	9	2	0	0	0	0.024344	1	2978	2978		30.318	1.1477	1	129300	+		75494	31410	52600	52688	83094	83094					0.03467999266365496
SQEIYTSID	9	Unmodified	_SQEIYTSID_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.76611328125	2	528.248212	1054.48187	-0.30689	-0.00016211	1.51	0.00079764	1.2031	0.00063553	528.2489634226416	56.5	0.45221	56.598	56.397	56.849	0.097893					19	12	2	0	0	0	0.024397	1	6260	6260		56.721	22.549	1	284720	+		75495	35630	52601	52689	83095	83095					-0.04319154135464487
SQEIYTSID	9	Unmodified	_SQEIYTSID_					0	0	0			REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	REV__ENST00000587730.5_1_19:14519750-14520297:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.248212	1054.48187	-0.96553	-0.00051004	2.4738	0.0013068	1.5083	0.00079675	528.2496511842642	56.672	0.50792	56.672	56.46	56.968	0	0.040837	0.00035338	NaN	54.776	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307930	+		75496	35630	52601	52689							-0.04319154135464487
SQELNLQKL	9	Unmodified	_SQELNLQKL_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27;nc|ENSG00000165115|Q86VH2-4|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.8026123046875	2	536.803488	1071.59242	-1.0211	-0.00054815	0.33592	0.00018033	-0.68521	-0.00036782	536.8035845495524	51.486	0.59167	51.339	51.084	51.676	-0.14735					44	16	4	0	0	0	0.013065	1	5434	5434		171.53	0	1	2819100			75497	7365	52602	52690	83096	83096					0.05949110643427957
SQERRLLK	8	Unmodified	_SQERRLLK_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557199.1_1_12:56740507-56742527:-|nuORF;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2720336914062	2	515.311815	1028.60908	-0.18216	-9.3872E-05	2.5097	0.0012933	2.3276	0.0011994	515.3130344104565	39.392	0.82878	39.392	38.868	39.696	0					52	23	3	0	0	0	0.027866	1	3399	3399		35.618	0	1	875010			75498	8057	52603	52691	83097	83097					0.09591656320048969
SQERRYHG	8	Unmodified	_SQERRYHG_					0	0	0			REV__ENST00000335223.5_1_9:130455530-130477918:-|nuORF	REV__ENST00000335223.5_1_9:130455530-130477918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7823486328125	2	516.752121	1031.48969	0.39537	0.00020431	3.1667	0.0016364	3.562	0.0018407	516.7534805000032	72.024	0.44232	71.762	71.441	71.884	-0.26199					13	10	2	0	0	0	0.027866	1	8400	8400		38.806	1.647	1	109850	+		75499	30528	52604	52692	83098	83098					-0.024795373046572422
SQETPAQESV	10	Unmodified	_SQETPAQESV_					0	0	0			REV__ENSG00000198670|ENST00000316300|LPA	REV__ENSG00000198670|ENST00000316300|LPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2493896484375	2	538.248743	1074.48293	-0.956	-0.00051457	4.0333	0.0021709	3.0773	0.0016563	538.2507486189704	55.987	0.80597	55.83	55.607	56.413	-0.15656					65	20	5	0	0	0	0.83648	1	6059	6059		58.246	3.4816	1	3696100	+		75500	28446	52605	52693	83099	83099					-0.05132939766576783
SQFALHSQ	8	Unmodified	_SQFALHSQ_					0	0	0			REV__ENST00000514325.1_1_4:83279715-83279970:-|nuORF	REV__ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.22515869140625	2	459.227417	916.44028	-0.63791	-0.00029294	-4.1738	-0.0019167	-4.8117	-0.0022097	459.2256023031956	26.277	2.3769	26.041	25.593	27.97	-0.23603					166	59	4	0	0	0	0.67154	1	1331	1331		69.628	6.3214	1	35750000	+		75501	34170	52606	52694	83100	83100					-0.021282453134745083
SQFALHSQ	8	Unmodified	_SQFALHSQ_					0	0	0			REV__ENST00000514325.1_1_4:83279715-83279970:-|nuORF	REV__ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.227417	916.44028	-0.90546	-0.00041581	-4.1481	-0.0019049	-5.0535	-0.0023207	459.2256379392626	26.131	2.5714	25.967	25.457	28.029	-0.16331					204	65	5	0	0	0	0.53593	3	1324	1276;1300;1324		82.241	11.398	1	50655000	+		75502	34170	52606	52694	83101;83102;83103	83103					-0.021282453134745083
SQFGHVVDI	9	Unmodified	_SQFGHVVDI_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2911682128906	2	501.256174	1000.49779	0.37573	0.00018833	-0.083568	-4.1889E-05	0.29216	0.00014645	501.25608499106033	55.829	0.66806	55.829	55.573	56.241	0					55	18	4	0	0	0	0.024307	1	6199	6199		63.534	34.384	1	4739900			75503	4157	52607	52695	83104	83104					-0.0024340310790194053
SQFGHVVDI	9	Unmodified	_SQFGHVVDI_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2919006347656	2	501.256174	1000.49779	-0.19347	-9.6976E-05	0.56248	0.00028195	0.36901	0.00018497	501.2563974827649	55.934	0.87997	55.778	55.404	56.284	-0.15601					65	23	4	0	0	0	0.024313	1	6176	6176		60.118	26.197	1	4469700			75504	4157	52607	52695	83105	83105					-0.0024340310790194053
SQFGHVVDI	9	Unmodified	_SQFGHVVDI_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2919006347656	2	501.256174	1000.49779	-0.81348	-0.00040776	1.0652	0.00053396	0.25175	0.00012619	501.2566529831651	55.587	0.91219	55.685	55.371	56.283	0.098015					65	24	4	0	0	0	0.024283	1	6082	6082		56.434	18.622	1	4563700			75505	4157	52607	52695	83106	83106					-0.0024340310790194053
SQFGQILDI	9	Unmodified	_SQFGQILDI_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000598923.1_1_19:41257313-41268988:+|nuORF	ENSG00000077312|ENST00000243563|SNRPA	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7709045410156	2	510.771657	1019.52876	-0.51318	-0.00026212	1.6727	0.00085437	1.1595	0.00059225	510.77191318983137	84.198	0.68934	84.198	83.692	84.381	0					36	15	3	0	0	0	0.015512	3	10544	10532;10544;10558		159.28	15.754	1	6165700			75506	1607	52608	52696	83107;83108;83109	83108					0.019777502063448082
SQFGQILDI	9	Unmodified	_SQFGQILDI_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000598923.1_1_19:41257313-41268988:+|nuORF	ENSG00000077312|ENST00000243563|SNRPA	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.7704772949219	2	510.771657	1019.52876	-0.78987	-0.00040344	0.61884	0.00031609	-0.17103	-8.7358E-05	510.7719353070694	84.557	1.6811	84.484	83.743	85.424	-0.072769					126	39	5	0	0	0	0.015512	2	10509	10497;10509		159.28	15.754	1	14600000			75507	1607	52608	52696	83110;83111	83111					0.019777502063448082
SQFGQILDI	9	Unmodified	_SQFGQILDI_					0	0	0		ENSG00000077312|ENST00000243563|SNRPA;ENST00000598923.1_1_19:41257313-41268988:+|nuORF	ENSG00000077312|ENST00000243563|SNRPA	ENSG00000077312|ENST00000243563|SNRPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.77093505859375	2	510.771657	1019.52876	-0.66248	-0.00033838	0.55539	0.00028368	-0.10709	-5.4699E-05	510.7718822219075	84.49	1.9784	84.517	83.641	85.619	0.026558					134	46	5	0	0	0	0.015512	2	10444	10432;10444		159.28	10.804	1	13872000			75508	1607	52608	52696	83112;83113	83113					0.019777502063448082
SQFKHQEAM	9	Unmodified	_SQFKHQEAM_					0	0	0		nc|ENSG00000120616|Q9H2F5-3|EPC1;ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32575832-32580264:-|nuORF	nc|ENSG00000120616|Q9H2F5-3|EPC1	nc|ENSG00000120616|Q9H2F5-3|EPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.32666015625	2	553.258391	1104.50223	-0.91935	-0.00050864	0.8798	0.00048676	-0.039543	-2.1877E-05	553.2586150453358	54.142	0.5469	54.006	53.779	54.326	-0.13617					27	16	3	0	0	0	0.024466	1	5741	5741		31.53	0	1	1020700			75509	3825	52609	52697	83114	83114					-0.04584261956665614
SQFLLACGVL	10	Unmodified	_SQFLLACGVL_					0	0	0		ENSG00000110786|ENST00000358540|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7550659179688	2	525.786253	1049.55795	1.0561	0.00055528	0.32016	0.00016833	1.3762	0.00072361	525.7867690995951	36.911	0.39851	36.701	36.485	36.883	-0.2092					12	9	2	0	0	0	0.03519	1	2910	2910		26.693	4.733	1	44326			75510	3063	52610	52698	83115	83115					0.03515571230968817
SQFLLACGVL	10	Unmodified	_SQFLLACGVL_					0	0	0		ENSG00000110786|ENST00000358540|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.786253	1049.55795	-0.13618	-7.16E-05	3.6083	0.0018972	3.4722	0.0018256	525.7873037450115	36.841	0.3175	36.879	36.762	37.08	0.038044	0.088742	0.0022083	NaN	18.262	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213690			75511	3063	52610	52698							0.03515571230968817
SQFLYPKV	8	Unmodified	_SQFLYPKV_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2736511230469	2	491.273835	980.533118	-0.33554	-0.00016484	0.0052251	2.5669E-06	-0.33031	-0.00016227	491.2736920878139	56.164	1.0601	56.008	55.554	56.614	-0.15601					85	28	4	0	0	0	0.62178	1	6203	6203		74.255	7.8258	1	3068500			75512	4427	52611	52699	83116	83116					0.04207259419899856
SQFLYPKV	8	Unmodified	_SQFLYPKV_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.27276611328125	2	491.273835	980.533118	-0.95946	-0.00047136	0.51204	0.00025155	-0.44742	-0.0002198	491.2739422011162	55.816	1.0937	55.914	55.523	56.616	0.097893					72	29	3	0	0	0	0.50717	1	6110	6110		84.916	35.474	1	3479700			75513	4427	52611	52699	83117	83117					0.04207259419899856
SQFPGAITL	9	Unmodified	_SQFPGAITL_					0	0	0		ENST00000263083.10_1_17:1944800-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2562561035156	2	467.255643	932.496732	-0.14542	-6.7947E-05	0.16944	7.917E-05	0.02402	1.1223E-05	467.2556315786275	76.325	1.6628	76.325	75.806	77.469	0					114	40	4	0	0	0	0.03201	6	9390	9390;9402;9415;9427;9440;9452		139.97	33.495	1	2889900			75514	11520	52612	52700	83118;83119;83120;83121;83122;83123	83118					0.027783825231722403
SQFPGAITL	9	Unmodified	_SQFPGAITL_					0	0	0		ENST00000263083.10_1_17:1944800-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.256103515625	2	467.255643	932.496732	-0.206	-9.6256E-05	0.232	0.0001084	0.025997	1.2147E-05	467.2556601692759	76.552	1.5436	76.323	75.815	77.358	-0.22843					107	37	4	0	0	0	0.025498	6	9394	9382;9394;9406;9419;9432;9468		145.16	33.507	1	3020000			75515	11520	52612	52700	83124;83125;83126;83127;83128;83129	83125					0.027783825231722403
SQFPGAITL	9	Unmodified	_SQFPGAITL_					0	0	0		ENST00000263083.10_1_17:1944800-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	ENST00000263083.10_1_17:1944800-1946395:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.25634765625	2	467.255643	932.496732	0.96969	0.00045309	-0.91627	-0.00042813	0.053417	2.4959E-05	467.2551014249325	76.425	1.6688	76.437	75.863	77.531	0.011635					117	40	4	0	0	0	0.014918	9	9348	9290;9301;9312;9324;9336;9348;9361;9373;9385		162.25	38.518	1	3185600			75516	11520	52612	52700	83130;83131;83132;83133;83134;83135;83136;83137;83138	83135					0.027783825231722403
SQFPGTQRL	9	Unmodified	_SQFPGTQRL_					0	0	0		ENSG00000132330|ENST00000254663|SCLY;ENST00000463433.1_1_2:238999874-239004239:+|nuORF;ENST00000480357.5_1_2:239002940-239006993:+|nuORF	ENSG00000132330|ENST00000254663|SCLY	ENSG00000132330|ENST00000254663|SCLY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2739868164062	2	517.274898	1032.53524	-0.6858	-0.00035475	-0.61572	-0.0003185	-1.3015	-0.00067325	517.2745465631918	45.262	1.5497	45.262	44.862	46.412	0					140	44	6	0	0	0	0.041068	7	4405	4358;4369;4381;4405;4418;4430;4442		132.76	39.615	1	35559000			75517	4593	52613	52701	83139;83140;83141;83142;83143;83144;83145	83142					0.02027688157704688
SQFPGTQRL	9	Unmodified	_SQFPGTQRL_					0	0	0		ENSG00000132330|ENST00000254663|SCLY;ENST00000463433.1_1_2:238999874-239004239:+|nuORF;ENST00000480357.5_1_2:239002940-239006993:+|nuORF	ENSG00000132330|ENST00000254663|SCLY	ENSG00000132330|ENST00000254663|SCLY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2749633789062	2	517.274898	1032.53524	-0.62608	-0.00032386	-0.57533	-0.0002976	-1.2014	-0.00062146	517.2746085938176	45.402	1.6177	45.253	44.796	46.414	-0.1488					161	46	7	0	0	0	0.025498	8	4423	4364;4375;4387;4399;4411;4423;4436;4447		145.16	46.574	1	34803000			75518	4593	52613	52701	83146;83147;83148;83149;83150;83151;83152;83153	83151					0.02027688157704688
SQFPGTQRL	9	Unmodified	_SQFPGTQRL_					0	0	0		ENSG00000132330|ENST00000254663|SCLY;ENST00000463433.1_1_2:238999874-239004239:+|nuORF;ENST00000480357.5_1_2:239002940-239006993:+|nuORF	ENSG00000132330|ENST00000254663|SCLY	ENSG00000132330|ENST00000254663|SCLY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2737426757812	2	517.274898	1032.53524	-0.66843	-0.00034576	-0.47855	-0.00024754	-1.147	-0.0005933	517.2746353874603	45.251	1.5397	45.295	44.894	46.433	0.04388					132	44	7	0	0	0	0.041068	9	4349	4291;4301;4312;4324;4336;4349;4361;4373;4399		132.76	44.581	1	34958000			75519	4593	52613	52701	83154;83155;83156;83157;83158;83159;83160;83161;83162	83159					0.02027688157704688
SQFPLPLAV	9	Unmodified	_SQFPLPLAV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.28125	2	486.28166	970.548768	-0.33887	-0.00016479	-0.32258	-0.00015686	-0.66145	-0.00032165	486.2816732092371	89.519	1.9921	89.519	88.978	90.97	0					116	47	4	0	0	0	0.014988	8	11300	11264;11276;11288;11300;11312;11324;11336;11350		161.9	68.703	1	43519000			75520	9957	52614	52702	83163;83164;83165;83166;83167;83168;83169;83170	83166					0.06231545936930161
SQFPLPLAV	9	Unmodified	_SQFPLPLAV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2814025878906	2	486.28166	970.548768	0.2851	0.00013864	-0.99092	-0.00048187	-0.70582	-0.00034323	486.28134582895365	89.535	2.0323	89.513	89.033	91.065	-0.021645					120	48	4	0	0	0	0.013333	6	11295	11235;11247;11259;11283;11295;11307		176.41	71.664	1	44362000			75521	9957	52614	52702	83171;83172;83173;83174;83175;83176	83175					0.06231545936930161
SQFPLPLAV	9	Unmodified	_SQFPLPLAV_					0	0	0		ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.28155517578125	2	486.28166	970.548768	-0.27512	-0.00013378	-0.40296	-0.00019595	-0.67808	-0.00032974	486.28160958307154	89.559	1.9867	89.575	89.092	91.078	0.015862					114	47	4	0	0	0	0.014988	7	11206	11195;11206;11218;11230;11242;11254;11266		161.9	63.127	1	46703000			75522	9957	52614	52702	83177;83178;83179;83180;83181;83182;83183	83178					0.06231545936930161
SQFPTPEAV	9	Unmodified	_SQFPTPEAV_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.2423400878906	2	488.242732	974.470912	-0.29351	-0.0001433	0.27788	0.00013567	-0.015627	-7.63E-06	488.2429092058086	61.2	1.1322	60.986	60.531	61.663	-0.2134					82	29	5	0	0	0	0.26966	2	7034	7034;7058		79.713	19.594	1	2505300			75523	2963	52615	52703	83184;83185	83184					-0.017345117190984638
SQFRAANMHAQ	11	Unmodified	_SQFRAANMHAQ_					0	0	0		ENSG00000130513|ENST00000252809|GDF15	ENSG00000130513|ENST00000252809|GDF15	ENSG00000130513|ENST00000252809|GDF15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.5205078125	3	420.868256	1259.58294	-0.094029	-3.9574E-05	-4.125	-0.0017361	-4.219	-0.0017756	421.2005801944745	31.915	0.67396	31.758	31.489	32.163	-0.15772					24	15	2	0	0	0	0.024735	1	2125	2125		8.0344	0	1	88052			75524	4425	52616	52704	83186	83186					-0.03646980913754305
SQFSGKITV	9	Unmodified	_SQFSGKITV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7663879394531	2	483.766374	965.518196	-0.072013	-3.4837E-05	-0.31604	-0.00015289	-0.38806	-0.00018773	483.76607046233744	47.166	0.70755	47.166	46.852	47.56	0					50	19	3	0	0	0	0.38419	1	4718	4718		66.962	5.99	1	6783400			75525	1562	52617	52705	83187	83187					0.03405767551896588
SQFSGKITV	9	Unmodified	_SQFSGKITV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7658996582031	2	483.766374	965.518196	0.40346	0.00019518	-0.80583	-0.00038983	-0.40237	-0.00019465	483.7658347300509	47.317	0.68448	47.164	46.858	47.542	-0.15301					49	18	3	0	0	0	0.22379	2	4718	4718;4732		85.862	16.234	1	6477900			75526	1562	52617	52705	83188;83189	83188					0.03405767551896588
SQFSGKITV	9	Unmodified	_SQFSGKITV_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7659606933594	2	483.766374	965.518196	-0.91139	-0.0004409	0.77009	0.00037254	-0.1413	-6.8357E-05	483.76645398416275	47.103	0.64221	47.162	46.88	47.522	0.059097					68	17	5	0	0	0	0.22379	2	4657	4643;4657		85.862	4.874	1	7705200			75527	1562	52617	52705	83190;83191	83191					0.03405767551896588
SQFSYQHAI	9	Unmodified	_SQFSYQHAI_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.7587280273438	2	540.759081	1079.50361	-0.6483	-0.00035058	-0.089117	-4.8191E-05	-0.73742	-0.00039877	540.7589079753541	47.23	0.84918	47.23	46.93	47.779	0					67	24	4	0	0	0	0.034407	2	4724	4724;4736		138.06	40.64	1	7908200			75528	5988;15922	52618	52706	83192;83193	83192					-0.0329630459625605
SQFSYQHAI	9	Unmodified	_SQFSYQHAI_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.7586669921875	2	540.759081	1079.50361	-0.20415	-0.00011039	-0.39817	-0.00021531	-0.60232	-0.00032571	540.7587117311481	47.402	0.82441	47.249	46.94	47.764	-0.15301					70	23	4	0	0	0	0.041068	2	4730	4730;4743		132.76	50.517	1	7705100			75529	5988;15922	52618	52706	83194;83195	83194					-0.0329630459625605
SQFSYQHAI	9	Unmodified	_SQFSYQHAI_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.7584838867188	2	540.759081	1079.50361	-1.4019	-0.00075809	0.6532	0.00035322	-0.7487	-0.00040486	540.7593030081523	47.171	0.71317	47.231	46.995	47.708	0.059097					59	20	4	0	0	0	0.056725	2	4668	4655;4668		126.24	38.546	1	8526400			75530	5988;15922	52618	52706	83196;83197	83197					-0.0329630459625605
SQFVRPLIA	9	Unmodified	_SQFVRPLIA_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.8050537109375	2	515.805834	1029.59712	-0.53614	-0.00027655	0.331	0.00017073	-0.20514	-0.00010581	515.8059382895353	56.522	0.76144	56.522	56.241	57.003	0					59	21	4	0	0	0	0.30449	2	6298	6298;6308		75.043	25.833	1	4862500			75531	3129	52619	52707	83198;83199	83198					0.08350039576839663
SQFVRPLIA	9	Unmodified	_SQFVRPLIA_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.8057250976562	2	515.805834	1029.59712	-0.69239	-0.00035714	0.30406	0.00015683	-0.38833	-0.0002003	515.8059498397218	56.668	0.84404	56.503	56.239	57.083	-0.16432					66	23	4	0	0	0	0.30449	2	6287	6287;6296		75.043	26.213	1	4998500			75532	3129	52619	52707	83200;83201	83200					0.08350039576839663
SQFVRPLIA	9	Unmodified	_SQFVRPLIA_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;CHD4|p.K618Nfs*5|1|0.16|ENSG00000111642|chr12:6597932-6597932|T/-|frameshift_variant	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.8048095703125	2	515.805834	1029.59712	-0.95288	-0.0004915	0.5812	0.00029979	-0.37168	-0.00019171	515.8060949939074	56.368	0.77213	56.466	56.209	56.981	0.097893					64	21	4	0	0	0	0.30449	2	6203	6194;6203		75.043	25.833	1	4872000			75533	3129	52619	52707	83202;83203	83203					0.08350039576839663
SQFWATSLN	9	Unmodified	_SQFWATSLN_					0	0	0			REV__ENST00000504897.2_1_5:140048760-140048925:+|nuORF	REV__ENST00000504897.2_1_5:140048760-140048925:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.274658203125	2	527.253631	1052.49271	-0.44394	-0.00023407	-4.2696	-0.0022512	-4.7135	-0.0024852	527.2511512740712	34.654	0.44016	34.476	34.25	34.69	-0.17744					18	10	2	0	0	0	0.024456	1	2527	2527		21.686	6.0439	1	191750	+		75534	33994	52620	52708	83204	83204					-0.03143706970513449
SQFWATSLN	9	Unmodified	_SQFWATSLN_					0	0	0			REV__ENST00000504897.2_1_5:140048760-140048925:+|nuORF	REV__ENST00000504897.2_1_5:140048760-140048925:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.253631	1052.49271	-0.47688	-0.00025144	-4.1387	-0.0021822	-4.6156	-0.0024336	527.2514752427675	34.685	0.40541	34.478	34.242	34.648	-0.20695	0.0010057	4.8553E-05	NaN	21.686	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163490	+		75535	33994	52620	52708							-0.03143706970513449
SQGLVHRDIKL	11	Unmodified	_SQGLVHRDIKL_					0	0	0		nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.5822448730469	3	422.582333	1264.72517	0.051062	2.1578E-05	-0.96778	-0.00040897	-0.91672	-0.00038739	422.58183891194597	96.092	3.0594	95.935	94.749	97.808	-0.15646					209	69	4	0	0	0	1.0655	1	11936	11936		24.276	5.7449	1	593240			75536	4675	52621	52709	83205	83205					0.1033955510006308
SQGQVPGAAL	10	Unmodified	_SQGQVPGAAL_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2722473144531	2	464.248349	926.482145	0.59411	0.00027581	1.2453	0.00057814	1.8394	0.00085395	464.2490089242953	19.391	0.33256	19.391	19.268	19.6	0					8	6	2	0	0	0	0.03519	1	395	395		51.193	8.7966	1	16846			75537	587	52622	52710	83206	83206					0.01596310375032317
SQGRGAPKI	9	Unmodified	_SQGRGAPKI_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2641296386719	2	457.264333	912.514114	0.3229	0.00014765	0.74381	0.00034012	1.0667	0.00048777	457.2642715497568	94.329	1.9745	94.207	93.754	95.729	-0.12215					93	45	3	0	0	0	0.67687	1	11640	11640		47.657	1.7054	1	1315300	+		75538	29019	52623	52711	83207	83207					0.054357228488470355
SQGSQCHLPE	10	Unmodified	_SQGSQCHLPE_					0	0	0		ENST00000421442.2_2_3:184090707-184093318:-|nuORF;ENST00000204615.11_1_3:184090388-184093318:-|nuORF	ENST00000421442.2_2_3:184090707-184093318:-|nuORF	ENST00000421442.2_2_3:184090707-184093318:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.8279418945312	2	543.237655	1084.46076	-0.82766	-0.00044962	-3.6688	-0.001993	-4.4964	-0.0024426	543.2360748488587	52.609	0.59029	52.609	52.311	52.901	0					20	14	2	0	0	0	0.03519	1	5627	5627		25.574	9.1009	1	64109			75539	11135	52624	52712	83208	83208					-0.07809442715984005
SQGSRLEKP	9	Unmodified	_SQGSRLEKP_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8;CPNE8|p.I135L|1|0.19|ENSG00000139117|chr12:38829383-38829383|T/A|missense_variant	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3122253417969	2	501.272355	1000.53016	-0.31314	-0.00015697	-3.7456	-0.0018776	-4.0587	-0.0020345	501.7724165021342	77.857	0.41584	77.873	77.739	78.155	0.015907					11	9	2	0	0	0	0.024418	1	9529	9529		37.812	14.769	1	105360			75540	5298	52625	52713	83209	83209					0.02991384295091848
SQGYLSPES	9	Unmodified	_SQGYLSPES_					0	0	0		nc|ENSG00000146592|Q02930-4|CREB5;nc|ENSG00000146592|Q02930-3|CREB5;nc|ENSG00000146592|Q02930-2|CREB5;ENSG00000146592|ENST00000357727|CREB5	nc|ENSG00000146592|Q02930-4|CREB5	nc|ENSG00000146592|Q02930-4|CREB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.234375	2	484.221997	966.429441	-0.035571	-1.7224E-05	0.32316	0.00015648	0.28759	0.00013926	484.2220470341583	41.399	0.56901	41.264	41.06	41.629	-0.13553					21	14	2	0	0	0	0.024344	1	3678	3678		23.523	0	1	249830			75541	5896	52626	52714	83210	83210					-0.05511692478421537
SQHDILQMI	9	Oxidation (M)	_SQHDILQM(Oxidation (M))I_		SQHDILQM(1)I		SQHDILQM(140)I	0	0	1		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.77392578125	2	550.773874	1099.53319	0.21193	0.00011673	-0.72504	-0.00039933	-0.51311	-0.00028261	550.7735226071	55.158	1.1697	55.158	54.757	55.927	0					108	32	5	0	0	0	0.030064	5	6052	6052;6061;6073;6085;6097		141.52	42.891	1	20578000			75542	300	52627	52715	83211;83212;83213;83214;83215	83211		5			-0.012591086424208697
SQHDILQMI	9	Oxidation (M)	_SQHDILQM(Oxidation (M))I_		SQHDILQM(1)I		SQHDILQM(130)I	0	0	1		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.7742309570312	2	550.773874	1099.53319	-0.57343	-0.00031583	0.17902	9.86E-05	-0.39441	-0.00021723	550.7739733581848	55.231	1.1465	55.081	54.711	55.857	-0.15036					118	31	7	0	0	0	0.038547	6	6057	6035;6045;6057;6069;6082;6095		134.77	52.525	1	24595000			75543	300	52627	52715	83216;83217;83218;83219;83220;83221	83218		5			-0.012591086424208697
SQHDILQMI	9	Oxidation (M)	_SQHDILQM(Oxidation (M))I_		SQHDILQM(1)I		SQHDILQM(130)I	0	0	1		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.7736206054688	2	550.773874	1099.53319	-0.83523	-0.00046003	0.26234	0.00014449	-0.57289	-0.00031553	550.7740767324063	54.866	0.97399	54.964	54.66	55.634	0.098015					82	26	4	0	0	0	0.038547	4	5944	5935;5944;5968;5980		134.77	41.57	1	22168000			75544	300	52627	52715	83222;83223;83224;83225	83223		5			-0.012591086424208697
SQHDILQMI	9	Unmodified	_SQHDILQMI_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7765502929688	2	542.776416	1083.53828	-0.32604	-0.00017697	0.18738	0.00010171	-0.13865	-7.5258E-05	542.776414331956	67.603	1.315	67.603	67.285	68.6	0					103	33	6	0	0	0	0.16638	1	8100	8100		95.815	13.575	1	15261000			75545	300	52627	52716	83226	83226					-0.00014804779789301392
SQHDILQMI	9	Unmodified	_SQHDILQMI_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.7762451171875	2	542.776416	1083.53828	-0.48424	-0.00026284	0.46674	0.00025334	-0.0175	-9.4985E-06	542.776579577496	67.98	1.5263	67.691	67.268	68.794	-0.28834					105	38	4	0	0	0	0.247	1	8112	8112		82.75	0.50997	1	14879000			75546	300	52627	52716	83227	83227					-0.00014804779789301392
SQHDILQMI	9	Unmodified	_SQHDILQMI_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.7760620117188	2	542.776416	1083.53828	-0.4435	-0.00024072	0.32793	0.00017799	-0.11558	-6.2732E-05	542.7765201981401	67.725	1.4844	67.747	67.387	68.871	0.021263					110	38	5	0	0	0	0.10464	2	7997	7997;8022		109.48	10.103	1	13510000			75547	300	52627	52716	83228;83229	83228					-0.00014804779789301392
SQHFSLHAP	9	Unmodified	_SQHFSLHAP_					0	0	0			REV__ZNF750|p.G127Dfs*239|1|0.19|ENSG00000141579|chr17:82832075-82832075|C/-|frameshift_variant	REV__ZNF750|p.G127Dfs*239|1|0.19|ENSG00000141579|chr17:82832075-82832075|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2538452148438	2	512.253966	1022.49338	0.0020289	1.0393E-06	-1.0209	-0.00052297	-1.0189	-0.00052193	512.2535245500372	53.952	2.95	54.05	53.631	56.581	0.098015					227	82	5	0	0	0	0.70186	1	5772	5772		45.952	1.4209	1	29194000	+		75548	37819	52628	52717	83230	83230					-0.016968675308021375
SQIERILNY	9	Unmodified	_SQIERILNY_					0	0	0			REV__SLITRK5|p.D550Tfs*3|1|0.26|ENSG00000165300|chr13:87677035-87677035|G/-|frameshift_variant	REV__SLITRK5|p.D550Tfs*3|1|0.26|ENSG00000165300|chr13:87677035-87677035|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.2681884765625	2	568.308938	1134.60332	0.10408	5.9152E-05	3.1652	0.0017988	3.2693	0.0018579	568.310901406451	75.887	0.70617	75.711	75.468	76.174	-0.17548					24	17	3	0	0	0	0.023454	1	9029	9029		82.241	18.033	1	116990	+		75549	25870	52629	52718	83231	83231					0.04140513017705416
SQIIARQFLG	10	Unmodified	_SQIIARQFLG_					0	0	0			REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.828369140625	2	566.827298	1131.64004	0.13413	7.6026E-05	2.895	0.001641	3.0291	0.001717	566.8289114734067	50.308	0.49168	50.028	49.729	50.221	-0.27977					21	12	2	0	0	0	0.03519	1	5119	5119		18.262	7.9968	1	540590	+		75550	28166	52630	52719	83232	83232					0.07948809634262943
SQIKLYNI	8	Unmodified	_SQIKLYNI_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000562408.1_1_16:28128533-28137161:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.7842102050781	2	489.784567	977.554582	-0.00077448	-3.7933E-07	0.11551	5.6576E-05	0.11474	5.6196E-05	489.7845261935227	56.053	0.99611	56.053	55.464	56.46	0					78	27	4	0	0	0	0.47727	1	6245	6245		87.696	5.4559	1	5134400			75551	7910	52631	52720	83233	83233					0.06490644448604144
SQIKLYNI	8	Unmodified	_SQIKLYNI_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000562408.1_1_16:28128533-28137161:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.7842102050781	2	489.784567	977.554582	-0.3152	-0.00015438	0.38676	0.00018943	0.071568	3.5053E-05	489.78465226430234	56.128	1.0277	55.972	55.404	56.431	-0.15601					83	27	4	0	0	0	0.30694	1	6220	6220		110.12	11.49	1	4525500			75552	7910	52631	52720	83234	83234					0.06490644448604144
SQIKLYNI	8	Unmodified	_SQIKLYNI_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000562408.1_1_16:28128533-28137161:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.784567	977.554582	-1.0754	-0.0005267	1.1146	0.00054591	0.039219	1.9209E-05	489.7850249469862	55.811	0.91183	55.909	55.409	56.321	0.097908	-0.068911	0.00055536	NaN	110.12	73	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4373400			75553	7910	52631	52720							0.06490644448604144
SQILARQRK	9	Unmodified	_SQILARQRK_					0	0	0			REV__ENSG00000110756|ENST00000349215|HPS5	REV__ENSG00000110756|ENST00000349215|HPS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2962646484375	2	550.338364	1098.66217	-1.0371	-0.00057075	-4.128	-0.0022718	-5.1651	-0.0028426	550.8359762956165	21.366	0.29529	21.366	21.195	21.491	0					10	5	3	0	0	0	0.02435	1	637	637		60.972	9.7792	1	23939	+		75554	21872	52632	52721	83235	83235					0.11679034102712649
SQILKWSCPV	10	Unmodified	_SQILKWSCPV_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.779541015625	2	580.810259	1159.60597	-1.1059	-0.00064231	3.8447	0.002233	2.7388	0.0015907	580.8122456046337	44.945	0.65707	44.733	44.399	45.056	-0.21109					23	16	2	0	0	0	0.03519	1	4210	4210		30.318	0	1	442780	+		75555	29202	52633	52722	83236	83236					0.03254645150991564
SQILPILEVF	10	Unmodified	_SQILPILEVF_					0	0	0		ENST00000429089.6_1_8:42033183-42033450:-|nuORF	ENST00000429089.6_1_8:42033183-42033450:-|nuORF	ENST00000429089.6_1_8:42033183-42033450:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.8443603515625	2	579.842082	1157.66961	-0.24429	-0.00014165	3.9209	0.0022735	3.6766	0.0021319	579.844291048558	101.22	0.52096	101.09	100.85	101.37	-0.12576					20	11	2	0	0	0	1.1265	1	12579	12579		24.519	1.9395	1	111020			75556	14137	52634	52723	83237	83237					0.09708328859755966
SQILRKVSD	9	Unmodified	_SQILRKVSD_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;PNPLA8|p.S753Rfs*9|1|0.16|ENSG00000135241|chr7:108472487-108472491|CTTGA/-|frameshift_variant;ENSG00000135241|ENST00000257694|PNPLA8;PNPLA8|p.T373Kfs*14|1|0.23|ENSG00000135241|chr7:108514232-108514232|G/-|frameshift_variant	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3037719726562	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.82115	1	10788	10788		37.812	3.639	1	11897000			75557	4870	52635	52724	83238	83238					0.07224530363282611
SQIPAQPSV	9	Unmodified	_SQIPAQPSV_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7507019042969	2	463.750724	925.486896	-0.25313	-0.00011739	0.21696	0.00010061	-0.036173	-1.6775E-05	463.75081717597857	49.834	1.101	49.834	49.508	50.609	0					92	31	5	0	0	0	0.10482	2	5180	5168;5180		109.44	21.685	1	11037000			75558	3636	52636	52725	83239;83240	83240					0.021171945178025453
SQIPAQPSV	9	Unmodified	_SQIPAQPSV_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7508850097656	2	463.750724	925.486896	0.084884	3.9365E-05	-0.12603	-5.8446E-05	-0.041144	-1.908E-05	463.75069992220415	50.037	1.1292	49.886	49.558	50.687	-0.1512					84	32	4	0	0	0	0.10482	2	5174	5174;5186		109.44	32.665	1	10637000			75559	3636	52636	52725	83241;83242	83241					0.021171945178025453
SQIPAQPSV	9	Unmodified	_SQIPAQPSV_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7506103515625	2	463.750724	925.486896	0.040941	1.8986E-05	0.04527	2.0994E-05	0.086211	3.998E-05	463.75072003768804	49.747	1.309	49.821	49.428	50.737	0.074196					98	37	6	0	0	0	0.12933	3	5100	5077;5087;5100		104.01	32.584	1	11665000			75560	3636	52636	52725	83243;83244;83245	83245					0.021171945178025453
SQIPATPPSY	10	Unmodified	_SQIPATPPSY_					0	0	0		ENST00000587765.1_1_19:38282860-38283352:+|nuORF	ENST00000587765.1_1_19:38282860-38283352:+|nuORF	ENST00000587765.1_1_19:38282860-38283352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.281982421875	2	530.769114	1059.52368	0.12219	6.4856E-05	0.53707	0.00028506	0.65926	0.00034992	531.270585703077	59.521	0.43689	59.345	59.117	59.554	-0.1761					16	10	2	0	0	0	0.03519	1	6576	6576		32.812	7.2384	1	113240			75561	17276	52637	52726	83246	83246					-0.0037055365628475556
SQIPLSKI	8	Unmodified	_SQIPLSKI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2738037109375	2	443.273835	884.533118	-0.2683	-0.00011893	0.35155	0.00015583	0.083247	3.6901E-05	443.27394735002224	50.528	1.7175	50.528	50.052	51.77	0					122	49	5	0	0	0	0.044586	6	5281	5272;5281;5293;5305;5317;5331		190.52	56.705	1	26986000			75562	1655	52638	52727	83247;83248;83249;83250;83251;83252	83248					0.08623259419891838
SQIPLSKI	8	Unmodified	_SQIPLSKI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.274169921875	2	443.273835	884.533118	0.12918	5.7261E-05	-0.23691	-0.00010502	-0.10774	-4.7756E-05	443.27372315291876	50.757	1.3868	50.608	50.322	51.709	-0.14916					109	39	5	0	0	0	0.044586	6	5287	5276;5287;5299;5311;5323;5337		190.52	42.824	1	29633000			75563	1655	52638	52727	83253;83254;83255;83256;83257;83258	83254					0.08623259419891838
SQIPLSKI	8	Unmodified	_SQIPLSKI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.273681640625	2	443.273835	884.533118	0.084869	3.762E-05	0.042004	1.8619E-05	0.12687	5.6239E-05	443.2738956606954	50.379	1.7549	50.46	49.954	51.709	0.08099					117	50	5	0	0	0	0.020786	6	5219	5182;5194;5207;5219;5231;5246		205.58	46.404	1	30776000			75564	1655	52638	52727	83259;83260;83261;83262;83263;83264	83262					0.08623259419891838
SQISWFWN	8	Unmodified	_SQISWFWN_					0	0	0		ENST00000561734.5_1_16:836841-837139:-|nuORF;ENST00000569601.5_1_16:836841-837139:-|nuORF	ENST00000561734.5_1_16:836841-837139:-|nuORF	ENST00000561734.5_1_16:836841-837139:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7747802734375	2	534.250892	1066.48723	-1.1686	-0.00062435	-2.5373	-0.0013556	-3.706	-0.0019799	534.2506876803149	84.446	0.32955	84.373	84.178	84.507	-0.072769					9	7	2	0	0	0	0.027866	1	10531	10531		45.952	0	1	24702			75565	16833	52639	52728	83265	83265					-0.04335385762351507
SQITASNLVQ	10	Unmodified	_SQITASNLVQ_					0	0	0		ENST00000567143.1_1_16:58438378-58438630:+|nuORF;nc|ENSG00000181938|Q9BRX5-2|GINS3;ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3	ENST00000567143.1_1_16:58438378-58438630:+|nuORF	ENST00000567143.1_1_16:58438378-58438630:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3023681640625	2	530.785296	1059.55604	-0.11339	-6.0188E-05	-0.94011	-0.000499	-1.0535	-0.00055918	530.7849351623483	39.203	0.39708	38.978	38.771	39.168	-0.2257					15	10	2	0	0	0	0.03519	1	3259	3259		13.454	0	1	195630			75566	9082	52640	52729	83266	83266					0.02864233746709033
SQIYMETSL	9	Unmodified	_SQIYMETSL_					0	0	0		RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant;ENSG00000146587|ENST00000396912|RBAK	RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant	RBAK|p.Q698Rfs*9|1|0.3|ENSG00000146587|chr7:5065549-5065549|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3292236328125	2	536.254982	1070.49541	-0.59421	-0.00031865	1.8152	0.00097342	1.221	0.00065478	536.2561472079065	40.898	1.28	40.67	40.075	41.355	-0.2278					72	33	3	0	0	0	0.024205	1	3492	3492		44.117	0	1	466960			75567	5895	52641	52730	83267	83267					-0.037016196278727875
SQKAIQDEI	9	Unmodified	_SQKAIQDEI_					0	0	0		ENST00000504707.1_1_4:120981275-120987923:-|nuORF;ENSG00000164109|ENST00000296509|MAD2L1	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.27197265625	2	516.272021	1030.52949	0.012635	6.5232E-06	-0.54438	-0.00028105	-0.53175	-0.00027453	516.2717531147899	39.565	0.69602	39.565	39.183	39.879	0					49	19	3	0	0	0	0.027736	3	3423	3410;3423;3435		143.37	16.122	1	14668000			75568	15720	52642	52731	83268;83269;83270	83269					0.015445448553691676
SQKAIQDEI	9	Unmodified	_SQKAIQDEI_					0	0	0		ENST00000504707.1_1_4:120981275-120987923:-|nuORF;ENSG00000164109|ENST00000296509|MAD2L1	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2720947265625	2	516.272021	1030.52949	-1.0549	-0.00054459	0.51759	0.00026722	-0.53726	-0.00027737	516.27228069886	39.561	0.75298	39.463	39.091	39.844	-0.098755					54	20	3	0	0	0	0.027736	5	3385	3374;3385;3397;3409;3424		143.37	16.122	1	13165000			75569	15720	52642	52731	83271;83272;83273;83274;83275	83272					0.015445448553691676
SQKAIQDEI	9	Unmodified	_SQKAIQDEI_					0	0	0		ENST00000504707.1_1_4:120981275-120987923:-|nuORF;ENSG00000164109|ENST00000296509|MAD2L1	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	ENST00000504707.1_1_4:120981275-120987923:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.272216796875	2	516.272021	1030.52949	-1.3249	-0.00068402	0.95793	0.00049455	-0.367	-0.00018947	516.2725057230316	39.705	0.70564	39.729	39.421	40.126	0.023727					55	19	3	0	0	0	0.038547	5	3370	3359;3370;3382;3397;3410		134.77	16.023	1	12667000			75570	15720	52642	52731	83276;83277;83278;83279;83280	83277					0.015445448553691676
SQKDIEQSI	9	Unmodified	_SQKDIEQSI_					0	0	0		ENST00000471395.1_1_2:70045687-70052644:+|nuORF;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000471395.1_1_2:70045687-70052644:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2691040039062	2	524.269478	1046.5244	-1.7057	-0.00089426	0.9011	0.00047242	-0.80463	-0.00042184	524.2697743576118	38.316	0.8702	38.316	37.769	38.639	0					53	24	4	0	0	0	0.0086463	3	3197	3197;3207;3219		248.96	61.401	1	7751500			75571	9940	52643	52732	83281;83282;83283	83281					0.0030024099276033667
SQKDIEQSI	9	Unmodified	_SQKDIEQSI_					0	0	0		ENST00000471395.1_1_2:70045687-70052644:+|nuORF;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000471395.1_1_2:70045687-70052644:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2689819335938	2	524.269478	1046.5244	-1.0678	-0.00055982	0.7573	0.00039703	-0.31051	-0.00016279	524.2696793015258	38.217	0.93979	38.134	37.848	38.788	-0.082516					81	25	6	0	0	0	0.0085188	4	3161	3161;3170;3182;3196		253.05	56.478	1	7828800			75572	9940	52643	52732	83284;83285;83286;83287	83284					0.0030024099276033667
SQKDIEQSI	9	Unmodified	_SQKDIEQSI_					0	0	0		ENST00000471395.1_1_2:70045687-70052644:+|nuORF;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000471395.1_1_2:70045687-70052644:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2691650390625	2	524.269478	1046.5244	-1.6381	-0.00085881	0.84371	0.00044233	-0.7944	-0.00041648	524.2697434430988	38.368	1.2174	38.395	37.849	39.067	0.027275					70	33	4	0	0	0	0.0086463	4	3168	3146;3157;3168;3182		248.96	43.378	1	7371200			75573	9940	52643	52732	83288;83289;83290;83291	83290					0.0030024099276033667
SQKKTRLGT	9	Unmodified	_SQKKTRLGT_					0	0	0		ENST00000357606.7_1_12:56221676-56222300:-|nuORF	ENST00000357606.7_1_12:56221676-56222300:-|nuORF	ENST00000357606.7_1_12:56221676-56222300:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8036804199219	2	509.803823	1017.59309	0.56391	0.00028748	-0.9228	-0.00047045	-0.35889	-0.00018296	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.6504	1	10492	10492		49.442	8.8689	1	3699900			75574	12699	52644	52733	83292	83292					0.08499950083125896
SQKLRSLL	8	Unmodified	_SQKLRSLL_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.7746887207031	2	472.798009	943.581465	0.51036	0.0002413	-1.0786	-0.00050998	-0.56829	-0.00026868	472.79734896793025	36.997	0.47029	36.804	36.496	36.966	-0.193					23	11	3	0	0	0	0.027866	1	2953	2953		42.396	0	1	345320			75575	7789	52645	52734	83293	83293					0.10741753059812709
SQKNKRLN	8	Unmodified	_SQKNKRLN_					0	0	0			REV__ENST00000429398.5_1_1:114355167-114358079:+|nuORF	REV__ENST00000429398.5_1_1:114355167-114358079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30572509765625	2	494.28834	986.562127	1.1612	0.00057395	2.3133	0.0011434	3.4744	0.0017174	494.2893704014808	85.604	0.66763	85.604	85.331	85.998	0					32	15	3	0	0	0	0.027866	1	10713	10713		51.335	0	1	471650	+		75576	32334	52646	52735	83294	83294					0.06830796768895198
SQKPFIEFE	9	Unmodified	_SQKPFIEFE_					0	0	0			REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	REV__FRMD3|p.S313Rfs*55|1|0.08|ENSG00000172159|chr9:83299170-83299176|GACTGGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.3184814453125	2	562.784764	1123.55498	-0.82024	-0.00046162	-0.62855	-0.00035374	-1.4488	-0.00081536	562.78364191818	61.638	0.80468	61.461	61.078	61.883	-0.17781					30	19	3	0	0	0	0.024367	1	6930	6930		36.447	0	1	227900	+		75577	26639	52647	52736	83295	83295					-0.0018598062217733968
SQKPLSITV	9	Unmodified	_SQKPLSITV_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7769775390625	2	486.78985	971.565146	-0.33515	-0.00016315	-2.2539	-0.0010972	-2.5891	-0.0012603	486.7885511507168	41.717	0.22457	41.585	41.491	41.716	-0.13219					6	5	2	0	0	0	0.023837	1	3770	3770		64.207	0	1	58494			75578	4130	52648	52737	83296	83296					0.078226271030303
SQKTFGSGEK	10	Unmodified	_SQKTFGSGEK_					0	0	0			REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.766845703125	2	534.769645	1067.52474	-0.54891	-0.00029354	1.2137	0.00064905	0.6648	0.00035551	534.7700512960741	30.606	0.8005	30.457	29.967	30.768	-0.14952					19	13	2	0	0	0	0.03519	1	1920	1920		59.931	29.613	1	187940	+		75579	25418	52649	52738	83297	83297					-0.006323392873810008
SQKVAFLLD	9	Unmodified	_SQKVAFLLD_					0	0	0		nc|ENSG00000215864|P0C2Y1|NBPF7P	nc|ENSG00000215864|P0C2Y1|NBPF7P	nc|ENSG00000215864|P0C2Y1|NBPF7P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.63433837890625	2	510.78985	1019.56515	-0.63353	-0.0003236	-3.1619	-0.0016151	-3.7954	-0.0019387	511.28931119676326	103.06	0.12398	103.06	103	103.12	0					4	2	2	0	0	0	0.024457	1	13222	13222		5.9211	0	1	39327			75580	18725	52650	52739	83298	83298					0.056146271030456774
SQLAHLLAD	9	Unmodified	_SQLAHLLAD_					0	0	0			REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.26519775390625	2	484.263999	966.513445	0.071663	3.4704E-05	-0.41919	-0.000203	-0.34753	-0.0001683	484.26375440341576	57.192	0.79976	57.028	56.745	57.545	-0.16431					56	21	3	0	0	0	0.70156	1	6399	6399		45.972	1.8554	1	3279300	+		75581	21018	52651	52740	83299	83299					0.028848834091263598
SQLAHLLAD	9	Unmodified	_SQLAHLLAD_					0	0	0			REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2654724121094	2	484.263999	966.513445	-0.49014	-0.00023736	0.90635	0.00043892	0.41621	0.00020156	484.264061472821	56.885	0.71161	56.981	56.717	57.429	0.095306					79	19	5	0	0	0	0.6504	1	6307	6307		49.442	6.5773	1	3537400	+		75582	21018	52651	52740	83300	83300					0.028848834091263598
SQLEKREVW	9	Unmodified	_SQLEKREVW_					0	0	0		ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	ENSG00000178187|ENST00000519564|ZNF454	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	588.8062744140625	2	587.814387	1173.61422	-1.6196	-0.00095205	1.3297	0.00078164	-0.28991	-0.00017041	587.8151659380774	62.041	0.4632	61.863	61.654	62.117	-0.17781					22	11	2	0	0	0	0.024511	1	6984	6984		32.812	0	1	512880			75583	8800	52652	52741	83301	83301					0.034359153920149765
SQLETIEFV	9	Unmodified	_SQLETIEFV_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7744750976562	2	533.276772	1064.53899	-1.2606	-0.00067226	-0.69798	-0.00037222	-1.9586	-0.0010445	533.276068762615	49.57	1.2447	49.645	49.391	50.635	0.074192					63	35	4	0	0	0	0.024405	1	5225	5225		44.117	11.304	1	2826100	+		75584	26571	52653	52742	83302	83302					0.009303131409069465
SQLFSLVSLLT	11	Unmodified	_SQLFSLVSLLT_					0	0	0			REV__ENSG00000188958|ENST00000340524|UTS2B	REV__ENSG00000188958|ENST00000340524|UTS2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.8114929199219	3	403.23594	1206.68599	-0.76356	-0.0003079	-3.5111	-0.0014158	-4.2747	-0.0017237	403.23343654436167	28.717	0.25183	28.565	28.36	28.612	-0.15195					7	5	2	0	0	0	0.024738	1	1654	1654		14.779	8.7778	1	41960	+		75585	28081	52654	52743	83303	83303					0.09091410025848745
SQLILQKL	8	Unmodified	_SQLILQKL_					0	0	0		ENSG00000166343|ENST00000299432|MSS51	ENSG00000166343|ENST00000299432|MSS51	ENSG00000166343|ENST00000299432|MSS51	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.80548095703125	2	471.80276	941.590967	0.49797	0.00023494	-0.30212	-0.00014254	0.19585	9.2403E-05	471.8023756108443	56.049	1.0635	56.049	55.715	56.778	0					53	29	3	0	0	0	0.11183	1	6227	6227		157.33	0	1	3199300			75586	7545	52655	52744	83304	83304					0.11783521345330428
SQLIRAGKPY	10	Unmodified	_SQLIRAGKPY_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.76708984375	2	566.827298	1131.64004	-0.076125	-4.315E-05	-0.37049	-0.00021	-0.44662	-0.00025315	566.8268917902177	39.305	0.52142	39.079	38.874	39.395	-0.2257					38	13	4	0	0	0	0.03519	1	3318	3318		34.173	9.9698	1	711670			75587	5532	52656	52745	83305	83305					0.07948809634262943
SQLKKVFDK	9	Unmodified	_SQLKKVFDK_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3108520507812	2	546.824224	1091.63389	-0.34566	-0.00018902	3.9182	0.0021425	3.5725	0.0019535	546.8276285891179	63.895	0.15168	63.667	63.549	63.7	-0.22773					5	3	2	0	0	0	0.0245	1	7237	7237		36.447	24.24	1	41319	+		75588	23178	52657	52746	83306	83306					0.09174291402746348
SQLKMLFVQ	9	Unmodified	_SQLKMLFVQ_					0	0	0			REV__ENSG00000144635|ENST00000273130|DYNC1LI1	REV__ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7741088867188	2	547.307352	1092.60015	-0.30613	-0.00016755	3.8822	0.0021248	3.5761	0.0019572	547.3084879387633	33.273	0.31257	33.073	32.896	33.209	-0.20019					14	7	3	0	0	0	0.024539	1	2371	2371		14.865	11.935	1	106990	+		75589	24347	52658	52747	83307	83307					0.0575554663935236
SQLKNLSE	8	Unmodified	_SQLKNLSE_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.22503662109375	2	459.748182	917.481811	-0.32636	-0.00015004	-0.29465	-0.00013546	-0.62101	-0.00028551	459.7479275011763	26.45	0.59502	26.282	26.085	26.68	-0.16816					23	14	2	0	0	0	0.027866	1	1348	1348		34.173	14.176	1	266560			75590	1360	52659	52748	83308	83308					0.019768906551917098
SQLLGPTPAQA	11	Unmodified	_SQLLGPTPAQA_					0	0	0			REV__ENSG00000021762|ENST00000263650|OSBPL5	REV__ENSG00000021762|ENST00000263650|OSBPL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2691040039062	2	541.795663	1081.57677	-1.2435	-0.00067375	1.2823	0.00069473	0.038726	2.0981E-05	541.7962264952602	37.738	0.34428	37.519	37.271	37.615	-0.2195					12	8	2	0	0	0	0.024736	1	3012	3012		16.717	0	1	111280	+		75591	19997	52660	52749	83309	83309					0.03924824126352178
SQLLSYSDF	9	Unmodified	_SQLLSYSDF_					0	0	0		sp|P03177|KITH_EBVB9ThymidinekinaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TKPE=3SV=2	sp|P03177|KITH_EBVB9ThymidinekinaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TKPE=3SV=2	sp|P03177|KITH_EBVB9ThymidinekinaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TKPE=3SV=2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7792358398438	2	530.253297	1058.49204	0.37697	0.00019989	-0.12479	-6.6168E-05	0.25219	0.00013372	530.2530731963087	63.648	0.91599	63.389	63	63.916	-0.25824					58	23	4	0	0	0	0.02435	1	7198	7198		26.693	0	1	2565000			75592	37916	52661	52750	83310	83310					-0.034865464102495025
SQLPAKQRK	9	Unmodified	_SQLPAKQRK_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2488403320312	2	528.31964	1054.62473	0.078869	4.1668E-05	-0.34988	-0.00018485	-0.27101	-0.00014318	528.3193362819304	32.628	0.6137	32.435	32.249	32.863	-0.19261					21	14	2	0	0	0	0.024405	1	2283	2283		14.865	3.9993	1	130840			75593	5232	52662	52751	83311	83311					0.09959942837076596
SQLPPLREI	9	Unmodified	_SQLPPLREI_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8085327148438	2	526.808574	1051.60259	-0.89777	-0.00047295	0.34413	0.00018129	-0.55364	-0.00029166	526.8087775806663	57.285	0.69974	57.285	56.904	57.603	0					32	18	2	0	0	0	0.20652	3	6446	6425;6434;6446		88.177	16.153	1	6675100			75594	1738	52663	52752	83312;83313;83314	83314					0.07885718368675043
SQLPPLREI	9	Unmodified	_SQLPPLREI_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.8086547851562	2	526.808574	1051.60259	0.16179	8.5232E-05	-0.74858	-0.00039436	-0.58679	-0.00030913	526.808192118171	57.501	0.75307	57.326	56.931	57.684	-0.1749					34	19	2	0	0	0	0.065	4	6446	6425;6434;6446;6459		123.21	40.968	1	6187600			75595	1738	52663	52752	83315;83316;83317;83318	83317					0.07885718368675043
SQLPPLREI	9	Unmodified	_SQLPPLREI_					0	0	0		NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant;nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	NFE2L1|p.S530Pfs*15|1|0.16|ENSG00000082641|chr17:48058907-48058914|GACTCTGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8082885742188	2	526.808574	1051.60259	-0.16664	-8.7789E-05	-0.38585	-0.00020327	-0.55249	-0.00029106	526.8083348251183	57.145	0.66448	57.24	56.911	57.575	0.095306					31	17	2	0	0	0	0.1764	4	6325	6325;6335;6347;6362		93.598	25.744	1	5255200			75596	1738	52663	52752	83319;83320;83321;83322	83319					0.07885718368675043
SQLQTRQQI	9	Unmodified	_SQLQTRQQI_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.3045043945312	2	551.304187	1100.59382	-0.70052	-0.0003862	1.3149	0.00072494	0.61442	0.00033873	551.3053243603531	33.477	1.0737	33.477	33.135	34.209	0					81	28	5	0	0	0	0.062622	2	2430	2430;2444		124.08	28.265	1	13705000			75597	7843	52664	52753	83323;83324	83323					0.04754744732167637
SQLQTRQQI	9	Unmodified	_SQLQTRQQI_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.3058471679688	2	551.304187	1100.59382	-1.0731	-0.00059158	1.7504	0.00096503	0.67738	0.00037344	551.3055758199167	33.306	0.9162	33.312	33.043	33.959	0.0066261					72	24	5	0	0	0	0.086035	3	2378	2378;2392;2404		115.49	22.299	1	14965000			75598	7843	52664	52753	83325;83326;83327	83325					0.04754744732167637
SQLQTRQQI	9	Unmodified	_SQLQTRQQI_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	551.3013916015625	2	551.304187	1100.59382	0.22534	0.00012423	0.56699	0.00031259	0.79233	0.00043681	551.3050282356149	33.206	1.015	33.262	32.956	33.971	0.056572					69	26	5	0	0	0	0.014918	4	2312	2312;2321;2333;2345		162.25	40.076	1	13498000			75599	7843	52664	52753	83328;83329;83330;83331	83328					0.04754744732167637
SQLRALDP	8	Unmodified	_SQLRALDP_					0	0	0		ENST00000324464.7_1_19:41197700-41197790:-|nuORF	ENST00000324464.7_1_19:41197700-41197790:-|nuORF	ENST00000324464.7_1_19:41197700-41197790:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.26153564453125	2	450.250892	898.48723	-0.018673	-8.4077E-06	-0.664	-0.00029897	-0.68267	-0.00030737	450.24968216712915	41.307	0.23009	41.172	40.985	41.215	-0.13554					6	5	2	0	0	0	0.027866	1	3619	3619		68.787	15.435	1	26485			75600	12256	52665	52754	83332	83332					0.03392614237657199
SQLRALDP	8	Unmodified	_SQLRALDP_					0	0	0		ENST00000324464.7_1_19:41197700-41197790:-|nuORF	ENST00000324464.7_1_19:41197700-41197790:-|nuORF	ENST00000324464.7_1_19:41197700-41197790:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.250892	898.48723	0.40792	0.00018367	-2.3387	-0.001053	-1.9308	-0.00086934	450.24985964539127	41.404	0.39568	41.404	41.292	41.688	0	0.11621	-0.00059673	NaN	68.787	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85006			75601	12256	52665	52754							0.03392614237657199
SQLRVAKV	8	Unmodified	_SQLRVAKV_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.78472900390625	2	450.784902	899.55525	-0.71854	-0.00032391	-0.50162	-0.00022612	-1.2202	-0.00055003	450.78482508917403	28.68	2.232	28.68	28.318	30.55	0					135	54	5	0	0	0	0.58886	1	1715	1715		77.318	0.54344	1	30076000			75602	5073	52666	52755	83333	83333					0.10145483888322815
SQLRVAKV	8	Unmodified	_SQLRVAKV_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.7845764160156	2	450.784902	899.55525	-0.32184	-0.00014508	-0.96011	-0.0004328	-1.282	-0.00057788	450.7846003923993	28.685	2.4446	28.681	28.33	30.775	-0.0042019					131	59	5	0	0	0	0.87658	1	1663	1663		52.937	2.9122	1	27927000			75603	5073	52666	52755	83334	83334					0.10145483888322815
SQLRVAKV	8	Unmodified	_SQLRVAKV_					0	0	0		ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	ENST00000495728.1_1_9:127623696-127624209:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.7845764160156	2	450.784902	899.55525	0.027053	1.2195E-05	-1.1807	-0.00053224	-1.1536	-0.00052005	450.78445917154596	28.47	2.1759	28.551	28.167	30.343	0.080812					127	53	5	0	0	0	0.47727	2	1600	1589;1600		87.696	15.819	1	29153000			75604	5073	52666	52755	83335;83336	83336					0.10145483888322815
SQLSCLTDTI	10	Unmodified	_SQLSCLTDTI_					0	0	0			REV__ENST00000488258.5_1_7:151265789-151372578:-|nuORF	REV__ENST00000488258.5_1_7:151265789-151372578:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2860107421875	2	540.765714	1079.51688	0.0010381	5.614E-07	-1.4092	-0.00076204	-1.4081	-0.00076148	540.7643634764338	22.403	0.3686	22.214	21.959	22.327	-0.18894					12	7	2	0	0	0	0.03519	1	794	794		40.778	1.5253	1	55248	+		75605	33638	52667	52756	83337	83337					-0.019702345991845505
SQLSIFLCL	9	Unmodified	_SQLSIFLCL_					0	0	0		ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.7724304199219	2	512.280803	1022.54705	0.059947	3.071E-05	-2.4904	-0.0012758	-2.4305	-0.0012451	512.2776211136421	32.008	0.98236	31.816	31.353	32.335	-0.19261					54	22	4	0	0	0	0.024436	1	2130	2130		23.042	0	1	89307			75606	11938	52668	52757	83338	83338					0.03668168856677312
SQLSIFLCL	9	Unmodified	_SQLSIFLCL_					0	0	0		ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.280803	1022.54705	-0.6773	-0.00034697	-6.6732	-0.0034185	-7.3505	-0.0037655	512.2770754623828	31.907	0.51787	31.976	31.766	32.284	0.06896	-0.14584	1.6554E-05	NaN	40.778	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	574590			75607	11938	52668	52757							0.03668168856677312
SQLSIFLCL	9	Unmodified	_SQLSIFLCL_					0	0	0		ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.280803	1022.54705	-0.15901	-8.1456E-05	-7.2217	-0.0036995	-7.3807	-0.003781	512.2768203414275	32.679	0.57549	32.442	32.13	32.705	-0.23666	0.32055	-0.0005454	NaN	40.778	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171160			75608	11938	52668	52757							0.03668168856677312
SQLSMLQLSTI	11	Unmodified	_SQLSMLQLSTI_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.5545654296875	3	407.556684	1219.64822	0.32166	0.0001311	-4.0676	-0.0016578	-3.7459	-0.0015267	407.55477611550003	34.333	0.81697	34.126	33.668	34.485	-0.20695					35	20	2	0	0	0	0.97559	1	2525	2525		42.243	2.1844	1	1063100			75609	6713	52669	52758	83339	83339					0.04718575768742994
SQLSMLQLSTI	11	Unmodified	_SQLSMLQLSTI_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	407.556684	1219.64822	0.31362	0.00012782	-4.0712	-0.0016592	-3.7576	-0.0015314	407.5543438727171	34.317	0.81884	34.093	33.68	34.499	-0.22412	-0.016821	-0.00035505	NaN	42.243	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	855110			75610	6713	52669	52758							0.04718575768742994
SQLSMLQLSTI	11	Unmodified	_SQLSMLQLSTI_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	407.556684	1219.64822	-0.95744	-0.00039021	-2.9185	-0.0011894	-3.8759	-0.0015797	407.55493257558174	34.285	0.79032	34.11	33.662	34.452	-0.17557	0.00017433	0.0010544	NaN	42.243	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987660			75611	6713	52669	52758							0.04718575768742994
SQLSWLQLA	9	Unmodified	_SQLSWLQLA_					0	0	0		ENST00000247668.6_1_9:139780980-139793211:+|nuORF;ENST00000419057.5_1_9:139776423-139793211:+|nuORF	ENST00000247668.6_1_9:139780980-139793211:+|nuORF	ENST00000247668.6_1_9:139780980-139793211:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2774658203125	2	523.287474	1044.5604	0.22991	0.00012031	-0.99867	-0.00052259	-0.76876	-0.00040228	523.287264195004	56.628	0.59215	56.403	55.99	56.582	-0.2248					26	14	3	0	0	0	0.024466	1	6148	6148		39.253	11.371	1	327560			75612	11327	52670	52759	83340	83340					0.039897429602888224
SQLTHPSFVQV	11	Unmodified	_SQLTHPSFVQV_					0	0	0			REV__ENSG00000064393|ENST00000406875|HIPK2	REV__ENSG00000064393|ENST00000406875|HIPK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.83056640625	2	621.827495	1241.64044	0.014415	8.9639E-06	3.1305	0.0019466	3.1449	0.0019556	621.8294374884591	98.889	0.55505	98.764	98.59	99.145	-0.12458					19	13	2	0	0	0	1.0281	1	12272	12272		30.569	0.25114	1	65943	+		75613	20284	52671	52760	83341	83341					0.029281845634614
SQLVAPPL	8	Unmodified	_SQLVAPPL_					0	0	0			REV__nc|ENSG00000106258|P20815-2|CYP3A5	REV__nc|ENSG00000106258|P20815-2|CYP3A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.7463684082031	2	412.747453	823.480354	0.53661	0.00022148	-3.6343	-0.0015	-3.0976	-0.0012785	412.7458595051266	84.56	2.4958	84.357	83.567	86.063	-0.20329					121	58	4	0	0	0	1.0516	1	10219	10219		29.15	0	1	8025800	+		75614	36545	52672	52761	83342	83342					0.06155301357091503
SQLVKTEW	8	Unmodified	_SQLVKTEW_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.7668762207031	2	495.766374	989.518196	-0.14232	-7.0555E-05	-0.17253	-8.5536E-05	-0.31485	-0.00015609	495.7662759081245	52.732	0.67766	52.542	52.227	52.905	-0.18982					36	16	3	0	0	0	0.94517	1	5485	5485		45.952	1.8352	1	950060	+		75615	20386	52673	52762	83343	83343					0.023017675518985925
SQLVKTEW	8	Unmodified	_SQLVKTEW_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.766374	989.518196	-0.52327	-0.00025942	0.25707	0.00012745	-0.26619	-0.00013197	495.76649419080013	52.592	0.67413	52.464	52.118	52.792	-0.12705	-0.0876	0.00044843	NaN	45.952	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902140	+		75616	20386	52673	52762							0.023017675518985925
SQLVKTEW	8	Unmodified	_SQLVKTEW_					0	0	0			REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	REV__nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	495.766374	989.518196	-0.14232	-7.0555E-05	-0.17253	-8.5536E-05	-0.31485	-0.00015609	495.7662759081245	52.732	0.67766	52.542	52.227	52.905	-0.18982	-0.0097404	2.2463E-05	NaN	45.952	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950060	+		75617	20386	52673	52762							0.023017675518985925
SQLVLAKGSP	10	Unmodified	_SQLVLAKGSP_					0	0	0			REV__nc|ENSG00000204516|Q29980-2|MICB	REV__nc|ENSG00000204516|Q29980-2|MICB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7927551269531	2	500.295299	998.576045	0.25684	0.0001285	2.1498	0.0010756	2.4067	0.0012041	500.29496294673436	52.454	0.77312	52.306	51.985	52.758	-0.14723					30	19	2	0	0	0	0.03519	1	5630	5630		22.58	0	1	1090600	+		75618	28611	52674	52763	83344	83344					0.07670029477321805
SQLVLISDP	9	Unmodified	_SQLVLISDP_					0	0	0			REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2897644042969	2	486.274032	970.533512	-0.28484	-0.00013851	1.9759	0.00096083	1.6911	0.00082233	486.27476766767654	34.701	0.44718	34.494	34.284	34.731	-0.20695					19	10	2	0	0	0	0.023473	1	2561	2561		56.434	0	1	265340	+		75619	28152	52675	52764	83345	83345					0.0470663434908829
SQLWAFLNI	9	Unmodified	_SQLWAFLNI_					0	0	0		ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112;nc|ENSG00000000460|Q9NSG2-3|FIRRM	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2763061523438	2	546.297842	1090.58113	-0.75966	-0.000415	-3.1645	-0.0017287	-3.9241	-0.0021437	546.2964975054024	29.006	0.47139	28.857	28.7	29.171	-0.14952					23	10	4	0	0	0	0.024477	1	1729	1729		35.618	8.9254	1	83202			75620	714	52676	52765	83346	83346					0.039463333399453404
SQLWPVLITV	10	Unmodified	_SQLWPVLITV_					0	0	0			REV__ENST00000540839.7_3_16:67563547-67572402:+|nuORF	REV__ENST00000540839.7_3_16:67563547-67572402:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.305908203125	2	578.342249	1154.66995	-0.718	-0.00041525	-2.1144	-0.0012228	-2.8324	-0.0016381	578.3409660173439	76.064	0.33452	75.835	75.669	76.003	-0.22843					13	8	2	0	0	0	0.03519	1	9327	9327		24.519	6.2571	1	149260	+		75621	34759	52677	52766	83347	83347					0.09879748579578518
SQMFDELCI	9	Unmodified	_SQMFDELCI_					0	0	0			REV__ENST00000393262.3_1_12:76741439-76741523:-|nuORF	REV__ENST00000393262.3_1_12:76741439-76741523:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.8269653320312	2	543.235735	1084.45692	-0.63472	-0.0003448	0.46072	0.00025028	-0.174	-9.4521E-05	543.2357328358789	52.435	0.58367	52.527	52.28	52.864	0.091938					19	14	2	0	0	0	0.024457	1	5549	5549		37.159	15.199	1	130660	+		75622	31638	52678	52767	83348	83348					-0.08193248534075792
SQMFLLAW	8	Unmodified	_SQMFLLAW_					0	0	0			REV__HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant	REV__HEPH|p.V1031Lfs*13|1|0.5|ENSG00000089472|chrX:66260153-66260153|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7720947265625	2	498.254588	994.494624	1.8193	0.00090648	-1.5847	-0.0007896	0.23458	0.00011688	498.2533022488529	24.399	0.3462	24.219	24.072	24.418	-0.18089					12	7	2	0	0	0	0.027866	1	1037	1037		6.7355	0	1	48234	+		75623	20854	52679	52768	83349	83349					-0.002843694862690427
SQMLTVLRA	9	Unmodified	_SQMLTVLRA_					0	0	0		ENSG00000008382|ENST00000599840|MPND;nc|ENSG00000008382|Q8N594|MPND	ENSG00000008382|ENST00000599840|MPND	ENSG00000008382|ENST00000599840|MPND	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.3205871582031	2	509.789327	1017.5641	-0.25337	-0.00012916	-2.1225	-0.001082	-2.3759	-0.0012112	509.7878445099454	69.522	0.67693	69.522	69.238	69.915	0					35	16	3	0	0	0	0.024313	1	8348	8348		35.152	0	1	223770			75624	845	52680	52769	83350	83350					0.05602089462490767
SQMTGLLTED	10	Unmodified	_SQMTGLLTED_					0	0	0			REV__ENSG00000148840|ENST00000278070|PPRC1	REV__ENSG00000148840|ENST00000278070|PPRC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7727661132812	2	547.755346	1093.49614	0.18122	9.9262E-05	-2.4373	-0.0013351	-2.2561	-0.0012358	547.7538078161202	80.899	0.97977	80.692	80.385	81.364	-0.20633					49	23	3	0	0	0	0.03519	1	9739	9739		40.778	7.9657	1	562530	+		75625	24640	52681	52770	83351	83351					-0.04686824978830373
SQNAIDHKI	9	Unmodified	_SQNAIDHKI_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.2720336914062	2	513.272355	1024.53016	-0.37193	-0.0001909	-0.099429	-5.1034E-05	-0.47136	-0.00024194	513.2722164268123	26.591	0.86618	26.591	26.243	27.109	0					60	20	4	0	0	0	0.01896	3	1363	1363;1374;1387		150.36	48.761	1	3067500			75626	6550	52682	52771	83352;83353;83354	83352					0.018873842950824837
SQNAIDHKI	9	Unmodified	_SQNAIDHKI_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2720336914062	2	513.272355	1024.53016	-0.5065	-0.00025997	0.040071	2.0567E-05	-0.46643	-0.00023941	513.2723059098786	26.572	0.70012	26.549	26.283	26.984	-0.023088					55	16	5	0	0	0	0.01896	3	1352	1352;1364;1378		150.36	43.354	1	3307900			75627	6550	52682	52771	83355;83356;83357	83355					0.018873842950824837
SQNAIDHKI	9	Unmodified	_SQNAIDHKI_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.2721557617188	2	513.272355	1024.53016	-0.70027	-0.00035943	0.11886	6.1009E-05	-0.58141	-0.00029842	513.2723508253462	26.393	0.82912	26.475	26.131	26.96	0.081293					53	19	4	0	0	0	0.013337	3	1285	1285;1295;1308		176.44	57.702	1	3015100			75628	6550	52682	52771	83358;83359;83360	83358					0.018873842950824837
SQNARDLI	8	Unmodified	_SQNARDLI_					0	0	0			REV__ENSG00000184735|ENST00000327968|DDX53	REV__ENSG00000184735|ENST00000327968|DDX53	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7457580566406	2	458.745973	915.477394	-0.32962	-0.00015121	-0.42248	-0.00019381	-0.75209	-0.00034502	458.74575428907775	26.448	1.1408	26.425	26.164	27.304	-0.023088					74	28	4	0	0	0	0.77775	1	1367	1367		60.972	0	1	5679200	+		75629	27698	52683	52772	83361	83361					0.016274262322895083
SQNKRIDI	8	Unmodified	_SQNKRIDI_					0	0	0		YEATS2-HTR3C|1|fusion;ENSG00000163872|ENST00000305135|YEATS2	YEATS2-HTR3C|1|fusion;ENSG00000163872|ENST00000305135|YEATS2	YEATS2-HTR3C|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7607727050781	2	487.274898	972.535243	-0.15442	-7.5247E-05	-0.69134	-0.00033687	-0.84576	-0.00041212	487.2744093613644	25.478	0.54434	25.307	24.997	25.542	-0.17078					24	12	3	0	0	0	0.027866	1	1204	1204		30.504	5.9844	1	538870			75630	38163;7161	52684	52773	83362	83362					0.047876881577167296
SQNKSYLAV	9	Unmodified	_SQNKSYLAV_					0	0	0		ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.27044677734375	2	505.269281	1008.52401	-0.021577	-1.0902E-05	-0.016801	-8.4892E-06	-0.038378	-1.9391E-05	505.2691203239476	40.76	0.56945	40.76	40.481	41.051	0					39	15	3	0	0	0	0.43628	1	3615	3615		63.534	12.198	1	2686800			75631	10658	52685	52774	83363	83363					0.02008866063579262
SQNKSYLAV	9	Unmodified	_SQNKSYLAV_					0	0	0		ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.2697448730469	2	505.269281	1008.52401	0.60338	0.00030487	-0.65593	-0.00033142	-0.052551	-2.6552E-05	505.2687396814963	40.852	0.6438	40.729	40.407	41.051	-0.12318					49	17	5	0	0	0	0.35556	1	3610	3610		68.846	28.788	1	2546700			75632	10658	52685	52774	83364	83364					0.02008866063579262
SQNKSYLAV	9	Unmodified	_SQNKSYLAV_					0	0	0		ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.2704162597656	2	505.269281	1008.52401	-0.26227	-0.00013252	0.24285	0.00012271	-0.019423	-9.8139E-06	505.2692366224343	40.893	0.51814	40.916	40.629	41.147	0.023006					43	14	4	0	0	0	0.35556	1	3578	3578		68.846	25.982	1	2556200			75633	10658	52685	52774	83365	83365					0.02008866063579262
SQNLFCKVFLI	11	Unmodified	_SQNLFCKVFLI_					0	0	0			REV__ENST00000304916.3_1_8:127564985-127565123:-|nuORF	REV__ENST00000304916.3_1_8:127564985-127565123:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.5293884277344	3	437.90917	1310.70568	-0.12111	-5.3037E-05	-4.2516	-0.0018618	-4.3727	-0.0019148	438.2407796158549	32.322	0.56094	32.086	31.697	32.258	-0.23666					16	12	2	0	0	0	0.024765	1	2168	2168		26.75	0	1	34446	+		75634	30108	52686	52775	83366	83366					0.06275462764961048
SQNMYFNC	8	Unmodified	_SQNMYFNC_					0	0	0		PTPRZ1-TSPAN33|2|fusion;PTPRZ1-TSPAN33|1|fusion;PTPRZ1-TSPAN33|3|fusion;ENSG00000158457|ENST00000486685|TSPAN33	PTPRZ1-TSPAN33|2|fusion	PTPRZ1-TSPAN33|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7510681152344	2	503.691495	1005.36844	-0.39172	-0.0001973	1.8599	0.00093682	1.4682	0.00073951	503.69263997248174	33.937	0.12268	33.73	33.627	33.75	-0.20696					4	2	2	0	0	0	0.027866	1	2451	2451		12.207	5.0135	1	41239			75635	19011	52687	52776	83367	83367					-0.13403244053858998
SQNPSQVGRGY	11	Unmodified	_SQNPSQVGRGY_					0	0	0		CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant;CDH7|p.A734Vfs*15|1|0.19|ENSG00000081138|chr18:65880737-65880737|C/-|frameshift_variant;ENSG00000081138|ENST00000397968|CDH7	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	596.76708984375	2	596.788901	1191.56325	-0.61582	-0.00036752	2.9903	0.0017846	2.3744	0.001417	596.790886136669	58.134	0.24891	58.225	58.084	58.333	0.091217					11	6	2	0	0	0	0.024731	1	6495	6495		21.686	0	1	104860			75636	240	52688	52777	83368	83368					-0.024870336528238113
SQNQIQTNL	9	Unmodified	_SQNQIQTNL_					0	0	0		ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2859497070312	2	523.26727	1044.51999	-1.0603	-0.00055481	0.8997	0.00047078	-0.16057	-8.4023E-05	523.2677228758936	34.752	0.5362	34.752	34.408	34.944	0					19	13	2	0	0	0	0.024541	1	2629	2629		16.473	0	1	117350			75637	12144	52689	52778	83369	83369					-0.0004922343014186481
SQNQIQTNL	9	Unmodified	_SQNQIQTNL_					0	0	0		ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.26727	1044.51999	-0.83058	-0.00043462	1.1679	0.00061114	0.33735	0.00017652	523.2676518381016	34.55	0.58486	34.6	34.253	34.838	0.050255	-0.075384	0.00025466	NaN	27.882	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119750			75638	12144	52689	52778							-0.0004922343014186481
SQNSPQAAPTS	11	Unmodified	_SQNSPQAAPTS_					0	0	0		SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	SBF2|p.H1809Afs*4|1|0.21|ENSG00000133812|chr11:9781534-9781535|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2720336914062	2	544.25436	1086.49417	-1.1385	-0.00061965	-1.1087	-0.00060343	-2.2473	-0.0012231	544.2531073522119	55.471	0.41884	55.319	55.084	55.503	-0.15205					16	11	2	0	0	0	0.024787	1	5928	5928		41.427	22.323	1	93027			75639	4733	52690	52779	83370	83370					-0.04562117672435306
SQPDLPEPVET	11	Unmodified	_SQPDLPEPVET_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5110778808594	3	404.531192	1210.57175	0.48746	0.00019719	2.5593	0.0010353	3.0467	0.0012325	404.86562384007334	32.451	0.47417	32.215	31.824	32.299	-0.23666					18	10	3	0	0	0	0.024772	1	2188	2188		46.955	0	1	47240	+		75640	23331	52691	52780	83371	83371					-0.025115245269034858
SQPFILLY	8	Unmodified	_SQPFILLY_					0	0	0			REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.2281494140625	2	490.776211	979.537869	-0.73225	-0.00035937	-0.34175	-0.00016772	-1.074	-0.00052709	490.7754193779944	62.069	0.15806	61.891	61.804	61.963	-0.17781					5	3	2	0	0	0	0.027866	1	6979	6979		42.474	19.432	1	39117	+		75641	19071	52692	52781	83372	83372					0.04728143562681453
SQPIHSSN	8	Unmodified	_SQPIHSSN_					0	0	0			REV__nc|ENSG00000196628|P15884-11|TCF4	REV__nc|ENSG00000196628|P15884-11|TCF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2113952636719	2	435.209224	868.403895	0.71956	0.00031316	0.71298	0.0003103	1.4325	0.00062345	435.20897636286816	99.071	1.6509	98.936	98.026	99.677	-0.13526					76	39	3	0	0	0	0.94504	1	12278	12278		45.972	10.354	1	208370	+		75642	37055	52693	52782	83373	83373					-0.03557122210190755
SQPIHSSN	8	Unmodified	_SQPIHSSN_					0	0	0			REV__nc|ENSG00000196628|P15884-11|TCF4	REV__nc|ENSG00000196628|P15884-11|TCF4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	435.209224	868.403895	0.39478	0.00017181	1.2678	0.00055174	1.6625	0.00072356	435.20913766699374	99.237	1.1755	99.068	98.461	99.637	-0.16862	0.098218	0.00034707	NaN	45.972	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223920	+		75643	37055	52693	52782							-0.03557122210190755
SQPISLQNQV	10	Unmodified	_SQPISLQNQV_					0	0	0			REV__ENSG00000115661|ENST00000396738|STK16	REV__ENSG00000115661|ENST00000396738|STK16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.2991943359375	2	557.29857	1112.58259	0.22671	0.00012635	2.3282	0.0012975	2.5549	0.0014239	557.2996942658704	68.003	1.4123	68.003	67.719	69.131	0					84	36	4	0	0	0	0.80817	1	8146	8146		60.118	1.8883	1	3441700	+		75644	22223	52694	52783	83374	83374					0.030799226380622713
SQPLNKGG	8	Unmodified	_SQPLNKGG_					0	0	0		TMEM176B|p.E242Kfs*21|1|0.17|ENSG00000106565|chr7:150791620-150791621|-/CTTT|frameshift_variant	TMEM176B|p.E242Kfs*21|1|0.17|ENSG00000106565|chr7:150791620-150791621|-/CTTT|frameshift_variant	TMEM176B|p.E242Kfs*21|1|0.17|ENSG00000106565|chr7:150791620-150791621|-/CTTT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.55963134765625	2	400.716685	799.418816	-0.85765	-0.00034368	0.82131	0.00032911	-0.03634	-1.4562E-05	400.7172160115331	35.466	0.35397	35.28	35.061	35.415	-0.18675					14	8	2	0	0	0	0.027866	1	2674	2674		19.36	0	1	165430			75645	38085	52695	52784	83375	83375					0.0110836965782255
SQPPMEQVIY	10	Oxidation (M)	_SQPPM(Oxidation (M))EQVIY_		SQPPM(1)EQVIY		SQPPM(72)EQVIY	0	0	1			REV__ENSG00000125266|ENST00000646441|EFNB2	REV__ENSG00000125266|ENST00000646441|EFNB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.2850952148438	2	604.286814	1206.55907	-0.72873	-0.00044036	-2.1074	-0.0012735	-2.8361	-0.0017138	604.2854321515616	62.154	0.65923	61.94	61.624	62.283	-0.21375					50	16	4	0	0	0	0.64538	1	6999	6999		71.877	15.156	1	3222700	+		75646	22807	52696	52785	83376	83376		681			-0.03594259190776938
SQPPYYNV	8	Unmodified	_SQPPYYNV_					0	0	0		nc|ENSG00000182333|P07098-4|LIPF;nc|ENSG00000182333|P07098-3|LIPF;nc|ENSG00000182333|P07098-2|LIPF;ENSG00000182333|ENST00000238983|LIPF	nc|ENSG00000182333|P07098-4|LIPF	nc|ENSG00000182333|P07098-4|LIPF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2873840332031	2	484.229625	966.444697	-0.58657	-0.00028403	0.96259	0.00046612	0.37602	0.00018208	484.23007278087664	23.302	0.2354	23.241	23.111	23.347	-0.060862					8	5	2	0	0	0	0.027866	1	874	874		30.504	7.4612	1	64432			75647	18569	52697	52786	83377	83377					-0.039867808905796664
SQPQLTFTT	9	Unmodified	_SQPQLTFTT_					0	0	0			REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.784423828125	2	511.761289	1021.50803	-0.27573	-0.00014111	-1.0386	-0.00053154	-1.3144	-0.00067264	511.7601960824812	47.747	0.95908	47.649	47.007	47.966	-0.097553					39	25	2	0	0	0	0.024374	1	4606	4606		25.574	12.615	1	1178600	+		75648	33028	52698	52787	83378	83378					-0.001868401733418068
SQPQLTFTT	9	Unmodified	_SQPQLTFTT_					0	0	0			REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.761289	1021.50803	-0.50955	-0.00026077	-6.1433	-0.0031439	-6.6528	-0.0034047	511.7580520036902	47.502	0.88139	47.502	46.93	47.811	0	-0.072886	-0.00036231	NaN	19.104	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	895190	+		75649	33028	52698	52787							-0.001868401733418068
SQPQLTFTT	9	Unmodified	_SQPQLTFTT_					0	0	0			REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.761289	1021.50803	-0.088822	-4.5456E-05	-6.6047	-0.00338	-6.6935	-0.0034255	511.75788899957575	47.681	0.83847	47.528	47.052	47.891	-0.15301	-0.046935	-0.00083459	NaN	19.104	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	948460	+		75650	33028	52698	52787							-0.001868401733418068
SQPQLTFTT	9	Unmodified	_SQPQLTFTT_					0	0	0			REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	REV__ENST00000466266.6_1_9:79228267-79307072:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.761289	1021.50803	-1.1267	-0.00057658	-5.7639	-0.0029497	-6.8905	-0.0035263	511.75836694346924	47.457	0.73783	47.516	47.032	47.769	0.059097	-0.058764	2.6027E-05	NaN	19.104	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1020400	+		75651	33028	52698	52787							-0.001868401733418068
SQPRRRMI	8	Oxidation (M)	_SQPRRRM(Oxidation (M))I_		SQPRRRM(1)I		SQPRRRM(46)I	0	0	1		ENST00000427779.5_2_1:151239049-151239670:+|nuORF	ENST00000427779.5_2_1:151239049-151239670:+|nuORF	ENST00000427779.5_2_1:151239049-151239670:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	530.292724609375	2	530.295642	1058.57673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.78	1	101.65	101.15	102.15	-0.13156								0	0	0	0.63389	1	12631	12631		45.952	10.751	1				75652	14119	52699	52788	83379	83379		502			0.04978545645394661
SQPRTHSTL	9	Unmodified	_SQPRTHSTL_					0	0	0		ENSG00000142025|ENST00000269945|DMRTC2;DMRTC2|p.L258F|1|0.23|ENSG00000142025|chr19:41850328-41850328|C/T|missense_variant	ENSG00000142025|ENST00000269945|DMRTC2	ENSG00000142025|ENST00000269945|DMRTC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2911987304688	2	513.76998	1025.52541	-0.55236	-0.00028378	0.98962	0.00050844	0.43727	0.00022466	513.7702159756602	28.398	0.67491	28.393	28.157	28.832	-0.0042019					30	15	3	0	0	0	0.024381	1	1655	1655		45.952	14.422	1	712560			75653	5533	52700	52789	83380	83380					0.013665001523349929
SQPSKTLFV	9	Unmodified	_SQPSKTLFV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7819519042969	2	503.782025	1005.5495	-0.40357	-0.00020331	-0.077031	-3.8807E-05	-0.4806	-0.00024212	503.7819410742713	47.526	1.3359	47.526	47.146	48.482	0					135	39	5	0	0	0	0.071379	6	4766	4744;4766;4777;4789;4804;4817		120.87	43.551	1	16725000			75654	3405	52701	52790	83381;83382;83383;83384;83385;83386	83382					0.04694340586001999
SQPSKTLFV	9	Unmodified	_SQPSKTLFV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.78192138671875	2	503.782025	1005.5495	-0.20843	-0.000105	-0.31641	-0.0001594	-0.52484	-0.00026441	503.7818292198866	47.659	1.3079	47.506	47.125	48.433	-0.15301					122	38	4	0	0	0	0.15388	4	4791	4744;4755;4766;4791		98.582	13.134	1	16032000			75655	3405	52701	52790	83387;83388;83389;83390	83390					0.04694340586001999
SQPSKTLFV	9	Unmodified	_SQPSKTLFV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.781982421875	2	503.782025	1005.5495	-0.81244	-0.00040929	0.32655	0.00016451	-0.4859	-0.00024479	503.7821389539086	47.443	1.3343	47.502	47.144	48.478	0.059097					119	38	5	0	0	0	0.15388	7	4680	4670;4680;4691;4703;4715;4729;4740		98.582	26.029	1	17257000			75656	3405	52701	52790	83391;83392;83393;83394;83395;83396;83397	83392					0.04694340586001999
SQPSLKSIAVP	11	Unmodified	_SQPSLKSIAVP_					0	0	0		ENST00000250111.8_1_17:7559321-7559492:+|nuORF	ENST00000250111.8_1_17:7559321-7559492:+|nuORF	ENST00000250111.8_1_17:7559321-7559492:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.749267578125	2	563.826963	1125.63937	-0.35118	-0.000198	0.19391	0.00010933	-0.15727	-8.8674E-05	563.8267568271265	55.856	0.29572	55.7	55.591	55.887	-0.15601					11	7	2	0	0	0	0.024774	1	6161	6161		38.754	6.0031	1	149230			75657	11345	52702	52791	83398	83398					0.08157970194565678
SQPSTSSSII	10	Unmodified	_SQPSTSSSII_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-6|MDM2;nc|ENSG00000135679|Q00987-4|MDM2;nc|ENSG00000135679|Q00987-3|MDM2;nc|ENSG00000135679|Q00987-2|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987-5|MDM2	nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-5|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7820129394531	2	503.756204	1005.49785	-0.33545	-0.00016898	-2.1227	-0.0010693	-2.4581	-0.0012383	503.755152115774	47.674	1.9197	47.521	47.015	48.935	-0.15301					91	55	3	0	0	0	0.03519	1	4778	4778		79.713	27.413	1	576190			75658	4922;18298	52703	52792	83399	83399					-0.004674478985407404
SQPWNPGDRWR	11	Unmodified	_SQPWNPGDRWR_					0	0	0		ENST00000562594.2_1_16:29820010-29823326:+|nuORF	ENST00000562594.2_1_16:29820010-29823326:+|nuORF	ENST00000562594.2_1_16:29820010-29823326:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.7388000488281	3	466.89357	1397.65888	0.33438	0.00015612	-2.7924	-0.0013038	-2.4581	-0.0011477	466.8922452881713	23.564	0.90838	23.362	23.014	23.923	-0.20193					55	20	4	0	0	0	0.024739	1	950	950		22.562	0	1	553540			75659	16844	52704	52793	83400	83400					-0.024042607419687556
SQPWQVGLF	9	Unmodified	_SQPWQVGLF_					0	0	0		nc|ENSG00000186474|Q9UKR0-3|KLK12;ENSG00000186474|ENST00000684732|KLK12;nc|ENSG00000186474|Q9UKR0-2|KLK12	nc|ENSG00000186474|Q9UKR0-3|KLK12	nc|ENSG00000186474|Q9UKR0-3|KLK12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3175048828125	2	531.274367	1060.53418	-0.81104	-0.00043089	1.2002	0.00063762	0.38913	0.00020674	531.2742314457136	43.193	0.22187	42.956	42.839	43.061	-0.23737					6	5	2	0	0	0	0.023239	1	3946	3946		64.207	28.589	1	33187			75660	9553	52705	52794	83401	83401					0.0063347378879825555
SQPYVAHTL	9	Unmodified	_SQPYVAHTL_					0	0	0		nc|ENSG00000100095|Q9BYH1-4|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L;nc|ENSG00000100095|Q9BYH1-5|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2746276855469	2	508.263999	1014.51345	-0.054353	-2.7626E-05	-0.182	-9.2502E-05	-0.23635	-0.00012013	508.2638208243335	67.301	0.7634	67.325	66.985	67.748	0.023911					42	18	3	0	0	0	0.024397	1	7905	7905		31.53	3.6476	1	1174200			75661	2131	52706	52795	83402	83402					0.006768834091303688
SQPYVAHTL	9	Unmodified	_SQPYVAHTL_					0	0	0		nc|ENSG00000100095|Q9BYH1-4|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L;nc|ENSG00000100095|Q9BYH1-5|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	nc|ENSG00000100095|Q9BYH1-4|SEZ6L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.263999	1014.51345	0.62825	0.00031932	0.081045	4.1192E-05	0.70929	0.00036051	508.26509010225897	67.558	1.437	67.303	66.911	68.348	-0.25517	0.030644	6.0123E-05	NaN	24.519	70	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440330			75662	2131	52706	52795							0.006768834091303688
SQQDTRPAE	9	Unmodified	_SQQDTRPAE_					0	0	0		ENSG00000088367|ENST00000338074|EPB41L1	ENSG00000088367|ENST00000338074|EPB41L1	ENSG00000088367|ENST00000338074|EPB41L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.28955078125	2	516.241252	1030.46795	-0.4935	-0.00025476	-3.5639	-0.0018398	-4.0574	-0.0020946	516.2393251293868	33.594	1.0835	33.601	33.117	34.201	0.0066261					48	28	2	0	0	0	0.024397	1	2491	2491		39.253	0	1	151690			75663	1869	52707	52796	83403	83403					-0.04606386843875043
SQQEEVISSE	10	Unmodified	_SQQEEVISSE_					0	0	0		nc|ENSG00000170471|Q86X10-3|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2962646484375	2	568.259308	1134.50406	0.32972	0.00018737	-1.1085	-0.00062994	-0.77883	-0.00044258	568.758886344914	21.363	0.43368	21.186	20.822	21.256	-0.17721					11	8	3	0	0	0	0.03519	1	664	664		18.262	5.4504	1	14160			75664	18506	52708	52797	83404	83404					-0.05780974457707089
SQQINSQSL	9	Unmodified	_SQQINSQSL_					0	0	0			REV__PTPRZ1-TSPAN33|1|fusion	REV__PTPRZ1-TSPAN33|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7542419433594	2	502.753995	1003.49344	0.20986	0.00010551	0.255	0.0001282	0.46485	0.00023371	502.7540436629749	25.961	0.83652	26.041	25.749	26.585	0.08009					40	19	3	0	0	0	0.11092	1	1236	1236		108.09	14.944	1	2457500	+		75665	37421	52709	52798	83405	83405					-0.00816912321477048
SQQQIAQY	8	Unmodified	_SQQQIAQY_					0	0	0			REV__ENSG00000166503|ENST00000299633|HDGFL3	REV__ENSG00000166503|ENST00000299633|HDGFL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.23394775390625	2	483.237981	964.461409	-0.4904	-0.00023698	0.78854	0.00038105	0.29814	0.00014407	483.23817358524974	41.93	2.8302	41.698	41.508	44.338	-0.23186					138	76	3	0	0	0	0.027866	1	3702	3702		90.777	0	1	1089800	+		75666	26028	52710	52799	83406	83406					-0.022242800046228695
SQQQIAQY	8	Unmodified	_SQQQIAQY_					0	0	0			REV__ENSG00000166503|ENST00000299633|HDGFL3	REV__ENSG00000166503|ENST00000299633|HDGFL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.23492431640625	2	483.237981	964.461409	-1.0752	-0.00051957	-0.84168	-0.00040673	-1.9169	-0.0009263	483.2381671484681	40.59	3.6598	40.36	39.891	43.551	-0.23029					262	98	6	0	0	0	0.44658	1	3684	3684		90.777	0.40684	1	496380000	+		75667	26028	52710	52799	83407	83407					-0.022242800046228695
SQQRPRAR	8	Unmodified	_SQQRPRAR_					0	0	0		ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8959655761719	2	499.783756	997.552959	0.16589	8.291E-05	2.1929	0.001096	2.3588	0.0011789	499.7844058052976	46.219	0.49379	46.219	46.021	46.515	0					19	13	2	0	0	0	0.027866	1	4553	4553		15.642	0	1	153660			75668	12220	52711	52800	83408	83408					0.05408448203218086
SQQRVKRW	8	Unmodified	_SQQRVKRW_					0	0	0		nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182732|P49758-2|RGS6;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-8|RGS6;ENSG00000182732|ENST00000553525|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-12|RGS6;nc|ENSG00000182901|P49802-5|RGS7;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182901|P49802-4|RGS7;ENSG00000182901|ENST00000440928|RGS7	nc|ENSG00000182732|P49758-7|RGS6	nc|ENSG00000182732|P49758-7|RGS6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3028564453125	2	544.309606	1086.60466	-1.5659	-0.00085234	4.115	0.0022398	2.5491	0.0013875	544.3117339364823	65.313	0.44798	65.11	64.818	65.266	-0.20254					16	10	2	0	0	0	0.027866	1	7423	7423		21.96	12.777	1	1051800			75669	18570	52712	52801	83409	83409					0.06482191897134726
SQRFGALCL	9	Unmodified	_SQRFGALCL_					0	0	0			REV__ENST00000571710.5_1_17:1945329-1945866:+|nuORF	REV__ENST00000571710.5_1_17:1945329-1945866:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7481994628906	2	497.760569	993.506586	0.29453	0.00014661	-1.1996	-0.00059711	-0.90507	-0.00045051	497.75941765845977	68.433	0.35731	68.202	68	68.357	-0.23048					13	8	2	0	0	0	0.024436	1	7885	7885		38.806	35.396	1	254220	+		75670	35412	52713	52802	83410	83410					0.009572472569061574
SQRGSTPLAN	10	Unmodified	_SQRGSTPLAN_					0	0	0			REV__sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	REV__sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2794189453125	2	515.767437	1029.52032	-0.036396	-1.8772E-05	-2.8267	-0.0014579	-2.8631	-0.0014767	515.7656447433197	54.922	1.3013	54.691	54.246	55.547	-0.23087					46	36	2	0	0	0	0.03519	1	5932	5932		56.434	15.656	1	331030	+		75671	37539	52714	52803	83411	83411					0.0067419628969673795
SQRGSTPLAN	10	Unmodified	_SQRGSTPLAN_					0	0	0			REV__sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	REV__sp|P03210|BRRF2_EBVB9TegumentproteinBRRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BRRF2PE=3SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.767437	1029.52032	-0.48289	-0.00024906	-3.536	-0.0018238	-4.0189	-0.0020728	515.765738730507	54.596	0.48941	54.45	54.043	54.533	-0.14609	-0.12055	-0.00039686	NaN	56.434	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345230	+		75672	37539	52714	52803							0.0067419628969673795
SQRGVKDPC	9	Unmodified	_SQRGVKDPC_					0	0	0		ENST00000272462.2_1_2:110841994-110842294:-|nuORF	ENST00000272462.2_1_2:110841994-110842294:-|nuORF	ENST00000272462.2_1_2:110841994-110842294:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2822265625	2	495.245283	988.476014	-0.69232	-0.00034287	-2.7602	-0.001367	-3.4525	-0.0017098	495.2437000061774	25.001	0.65149	24.774	24.538	25.19	-0.22683					23	14	2	0	0	0	0.024257	1	1176	1176		58.23	6.8945	1	168530			75673	11654	52715	52804	83412	83412					-0.018685311281274153
SQRLKKLL	8	Unmodified	_SQRLKKLL_					0	0	0			REV__ENSG00000143614|ENST00000368655|GATAD2B;REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.3296203613281	2	493.329476	984.6444	3.1556	0.0015568	-3.1182	-0.0015383	0.037481	1.849E-05	493.3278214110012	18.442	0.69865	18.199	17.974	18.673	-0.24256					33	13	5	0	0	0	0.68535	1	279	279		68.485	0	1	693760	+		75674	24265;26146	52716	52805	83413	83413					0.15146318847837392
SQRRAPQP	8	Unmodified	_SQRRAPQP_					0	0	0			REV__ENSG00000100092|ENST00000649765|SH3BP1	REV__ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.5498046875	2	470.259582	938.504612	-0.44358	-0.0002086	-2.9577	-0.0013909	-3.4013	-0.0015995	470.25813929663644	40.498	0.21573	40.349	40.224	40.44	-0.1497					6	5	2	0	0	0	0.027866	1	3524	3524		47.916	0	1	163920	+		75675	21047	52717	52806	83414	83414					0.03289954563319952
SQRRIEEAF	9	Unmodified	_SQRRIEEAF_					0	0	0			REV__ENSG00000006757|ENST00000381042|PNPLA4	REV__ENSG00000006757|ENST00000381042|PNPLA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.3201904296875	2	568.296362	1134.57817	1.0905	0.00061972	2.4569	0.0013962	3.5473	0.0020159	568.2966417162115	20.312	0.2895	20.116	19.947	20.236	-0.19577					7	5	2	0	0	0	0.02435	1	511	511		51.335	22.165	1	9013.8	+		75676	19847	52718	52807	83415	83415					0.016264582151279683
SQRRPLITV	9	Unmodified	_SQRRPLITV_					0	0	0		ENST00000460950.1_1_1:173446500-173450645:+|nuORF	ENST00000460950.1_1_1:173446500-173450645:+|nuORF	ENST00000460950.1_1_1:173446500-173450645:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.2595825195312	2	535.327465	1068.64038	-0.53844	-0.00028824	4.1318	0.0022119	3.5934	0.0019236	535.3295359634267	53.856	0.68312	53.61	53.237	53.92	-0.2453					52	20	3	0	0	0	0.024447	1	5626	5626		25.574	0	1	1284500			75677	14669	52719	52808	83416	83416					0.10880229354120274
SQRSSSTRSL	10	Unmodified	_SQRSSSTRSL_					0	0	0			REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.3260498046875	2	554.788901	1107.56325	-0.49765	-0.00027609	3.704	0.0020549	3.2063	0.0017788	555.2911184913601	54.817	0.45211	54.671	54.459	54.911	-0.14609					20	11	4	0	0	0	0.03519	1	5828	5828		37.812	0	1	469410	+		75678	27300	52720	52809	83417	83417					0.013769663471521199
SQRSWSLW	8	Unmodified	_SQRSWSLW_					0	0	0		TMPRSS11B|p.P13S|1|0.12|ENSG00000185873|chr4:68241776-68241776|G/A|missense_variant	TMPRSS11B|p.P13S|1|0.12|ENSG00000185873|chr4:68241776-68241776|G/A|missense_variant	TMPRSS11B|p.P13S|1|0.12|ENSG00000185873|chr4:68241776-68241776|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2371826171875	2	525.261791	1048.50903	-0.96147	-0.00050502	2.281	0.0011981	1.3195	0.00069309	525.2626552419215	44.406	0.7964	44.187	43.709	44.506	-0.21939					33	21	2	0	0	0	0.027866	1	4163	4163		35.618	2.1027	1	178230			75679	38092	52721	52810	83418	83418					-0.013285810137858789
SQSCRLITL	9	Unmodified	_SQSCRLITL_					0	0	0		CLSTN2|p.S282Afs*73|1|0.41|ENSG00000158258|chr3:140448571-140448571|C/-|frameshift_variant	CLSTN2|p.S282Afs*73|1|0.41|ENSG00000158258|chr3:140448571-140448571|C/-|frameshift_variant	CLSTN2|p.S282Afs*73|1|0.41|ENSG00000158258|chr3:140448571-140448571|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.25537109375	2	510.778959	1019.54336	-1.398	-0.00071405	3.0617	0.0015638	1.6637	0.0008498	510.77875816249957	91.502	0.69051	91.353	91.183	91.873	-0.1487					30	15	4	0	0	0	0.024466	1	11248	11248		24.519	0	1	94984			75680	455	52722	52811	83419	83419					0.03437499082826889
SQSFEPRPL	9	Unmodified	_SQSFEPRPL_					0	0	0			REV__ENSG00000150907|ENST00000379561|FOXO1	REV__ENSG00000150907|ENST00000379561|FOXO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.74658203125	2	530.774731	1059.53491	-0.33901	-0.00017994	1.1127	0.00059058	0.77366	0.00041064	530.7748344490419	32.457	0.4888	32.299	32.035	32.524	-0.15772					25	11	3	0	0	0	0.024436	1	2230	2230		23.042	0	1	184830	+		75681	24739	52723	52812	83420	83420					0.007522684378500344
SQSISPFPS	9	Unmodified	_SQSISPFPS_					0	0	0		ENST00000527282.1_1_11:118133507-118134958:-|nuORF	ENST00000527282.1_1_11:118133507-118134958:-|nuORF	ENST00000527282.1_1_11:118133507-118134958:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.2652893066406	2	475.234907	948.455261	-1.1848	-0.00056307	1.2208	0.00058015	0.035929	1.7075E-05	475.2353458819609	51.677	1.269	51.408	51.085	52.354	-0.26903					64	33	3	0	0	0	0.024397	1	5406	5406		24.519	1.4767	1	388570			75682	16147	52724	52813	83421	83421					-0.021027982361374598
SQSKLNDMVI	10	Unmodified	_SQSKLNDMVI_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.3202514648438	2	567.794806	1133.57506	0.019838	1.1264E-05	-1.974	-0.0011208	-1.9542	-0.0011096	567.793241743421	20.224	0.28752	20.056	19.909	20.197	-0.16774					9	5	2	0	0	0	0.03519	1	511	511		37.812	5.061	1	23298	+		75683	23009	52725	52814	83422	83422					0.013614470460879602
SQSNMTQKV	9	Oxidation (M)	_SQSNM(Oxidation (M))TQKV_		SQSNM(1)TQKV		SQSNM(91)TQKV	0	0	1		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.74755859375	2	519.747856	1037.48116	1.7804	0.00092534	-1.9429	-0.0010098	-0.16257	-8.4493E-05	519.7467172564458	18.305	2.2357	18.305	18.038	20.274	0					103	45	3	0	0	0	0.18994	1	271	271		90.601	27.067	1	472070			75684	4087	52726	52815	83423	83423		162			-0.036082720561807946
SQSNMTQKV	9	Oxidation (M)	_SQSNM(Oxidation (M))TQKV_					0	0	1		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.747856	1037.48116	-0.088459	-4.5976E-05	0.033122	1.7215E-05	-0.055337	-2.8761E-05	519.7477232959995	18.516	2.0466	18.385	18.154	20.201	-0.13147	-0.0039964	0.001059	NaN	90.601	93	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222990			75685	4087	52726	52815				162			-0.036082720561807946
SQSNMTQKV	9	Oxidation (M)	_SQSNM(Oxidation (M))TQKV_					0	0	1		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.747856	1037.48116	3.7277	0.0019375	-3.5143	-0.0018265	0.21341	0.00011092	519.7459179524424	18.413	0.44005	18.476	18.307	18.747	0.063307	0.087414	-0.0026285	NaN	90.601	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46521			75686	4087	52726	52815				162			-0.036082720561807946
SQSNMTQKV	9	Unmodified	_SQSNMTQKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.75030517578125	2	511.750398	1021.48624	-0.96327	-0.00049295	1.2414	0.00063528	0.27812	0.00014233	511.75087856112316	25.305	0.86012	25.305	25.052	25.912	0					54	20	4	0	0	0	0.013719	3	1179	1179;1190;1203		168.26	42.173	1	2209900			75687	4087	52726	52816	83424;83425;83426	83424					-0.02363968193560595
SQSNMTQKV	9	Unmodified	_SQSNMTQKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.7503356933594	2	511.750398	1021.48624	-0.96274	-0.00049268	1.1816	0.00060468	0.21884	0.00011199	511.75090173005225	25.328	0.86113	25.293	25.037	25.898	-0.034395					64	20	4	0	0	0	0.015512	3	1175	1175;1185;1199		159.28	66.08	1	2641100			75688	4087	52726	52816	83427;83428;83429	83427					-0.02363968193560595
SQSPAPFGKV	10	Unmodified	_SQSPAPFGKV_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.271240234375	2	509.271824	1016.5291	-0.031802	-1.6196E-05	-0.010694	-5.4461E-06	-0.042496	-2.1642E-05	509.2717426440048	50.471	1.1998	50.191	49.839	51.038	-0.27977					62	31	3	0	0	0	1.1088	1	5149	5149		31.53	2.3598	1	9703700	+		75689	24238	52727	52817	83430	83430					0.021491699262014663
SQSPKKVTA	9	Unmodified	_SQSPKKVTA_					0	0	0		nc|ENSG00000277363|Q9C0H9-4|SRCIN1;nc|ENSG00000277363|Q9C0H9-2|SRCIN1;SRCIN1|p.E1146Rfs*2|1|0.12|ENSG00000277363|chr17:38533414-38533414|T/-|frameshift_variant;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-4|SRCIN1	nc|ENSG00000277363|Q9C0H9-4|SRCIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2824401855469	2	473.271824	944.529095	0.42087	0.00019918	-3.0352	-0.0014365	-2.6144	-0.0012373	473.27017530176965	51.059	0.33848	50.783	50.552	50.891	-0.27643					16	8	3	0	0	0	0.024484	1	5185	5185		30.318	0	1	109440			75690	18799	52728	52818	83431	83431					0.05461169926184084
SQSRFCIVLQ	10	Unmodified	_SQSRFCIVLQ_					0	0	0		ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	ENSG00000170881|ENST00000303545|RNF139	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.8092651367188	2	590.81079	1179.60703	-0.36544	-0.0002159	-2.6303	-0.001554	-2.9957	-0.0017699	590.8091828863319	59.192	1.964	59.01	58.187	60.151	-0.18134					96	49	4	0	0	0	0.64538	1	6556	6556		71.877	0	1	9588600			75691	8087	52729	52819	83432	83432					0.024408595199020056
SQSSLIHLV	9	Unmodified	_SQSSLIHLV_					0	0	0		nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.2835998535156	2	492.279649	982.544745	0.62519	0.00030777	-0.47511	-0.00023389	0.15008	7.3882E-05	492.2793914091438	58.535	0.66492	58.535	58.266	58.93	0					41	17	3	0	0	0	0.32811	2	6640	6640;6652		71.877	18.526	1	3555900			75692	2058	52730	52820	83433;83434	83433					0.05277456443252504
SQSSLIHLV	9	Unmodified	_SQSSLIHLV_					0	0	0		nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2857360839844	2	492.279649	982.544745	0.69143	0.00034038	-0.34574	-0.0001702	0.34569	0.00017018	492.2794492243882	58.778	0.83781	58.591	58.311	59.149	-0.18705					49	22	3	0	0	0	0.12602	2	6647	6642;6647		104.75	40.539	1	3866200			75693	2058	52730	52820	83435;83436	83436					0.05277456443252504
SQSSLIHLV	9	Unmodified	_SQSSLIHLV_					0	0	0		nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2837829589844	2	492.279649	982.544745	0.20458	0.00010071	0.077082	3.7946E-05	0.28167	0.00013866	492.2796115028365	58.424	0.66634	58.515	58.224	58.89	0.091217					40	17	3	0	0	0	0.2508	2	6543	6539;6543		82.241	34.583	1	3537400			75694	2058	52730	52820	83437;83438	83438					0.05277456443252504
SQSSVGSDLF	10	Unmodified	_SQSSVGSDLF_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7685546875	2	513.740554	1025.46655	-0.68273	-0.00035075	0.5062	0.00026006	-0.17653	-9.069E-05	513.7405837978407	38.929	0.32605	38.706	38.497	38.823	-0.22311					12	8	2	0	0	0	0.03519	1	3250	3250		36.447	6.6052	1	132710			75695	14277	52731	52821	83439	83439					-0.04516020932669562
SQSTDRSLKSV	11	Unmodified	_SQSTDRSLKSV_					0	0	0		nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-3|CIRBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	605.2861938476562	2	604.317491	1206.62043	-0.61633	-0.00037246	4.1274	0.0024942	3.511	0.0021218	604.3198431794996	57.837	0.46824	57.603	57.312	57.78	-0.23363					31	11	3	0	0	0	0.024767	1	6316	6316		68.846	14.07	1	2279800			75696	18120	52732	52822	83440	83440					0.0253838883284061
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7980651855469	2	487.797675	973.580796	-0.64636	-0.0003153	0.00086885	4.2382E-07	-0.6455	-0.00031487	487.7976777641617	50.205	1.9602	50.205	49.399	51.359	0					146	55	5	0	0	0	0.016542	7	5217	5217;5229;5239;5251;5263;5276;5291		154.12	60.923	1	29976000			75697	5672	52733	52823	83441;83442;83443;83444;83445;83446;83447	83441					0.09294913620101397
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7976379394531	2	487.797675	973.580796	-0.078569	-3.8326E-05	-0.60099	-0.00029316	-0.67956	-0.00033149	487.7973987765031	50.389	1.6212	50.238	49.781	51.402	-0.1512					129	46	5	0	0	0	0.030064	6	5234	5223;5234;5245;5257;5269;5285		141.52	48.325	1	34708000			75698	5672	52733	52823	83448;83449;83450;83451;83452;83453	83449					0.09294913620101397
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	OPSCC_39_ClassI_Rep-3	3	487.798095703125	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.983	1	50.064	49.564	50.564	0.08099								0	0	0	0.05529	1	5132	5132		106.68	18.987	1				75699	5672	52733	52823	83454	83454					0.09294913620101397
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	OPSCC_39_ClassI_Rep-3	3	487.79779052734375	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.037	1	50.118	49.618	50.618	0.08099								0	0	0	0.021002	1	5142	5142		129.42	36.226	1				75700	5672	52733	52823	83455	83455					0.09294913620101397
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	OPSCC_39_ClassI_Rep-3	3	487.79736328125	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.092	1	50.173	49.673	50.673	0.08099								0	0	0	0.05529	1	5152	5152		106.68	29.365	1				75701	5672	52733	52823	83456	83456					0.09294913620101397
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	OPSCC_39_ClassI_Rep-3	3	487.797607421875	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.154	1	50.235	49.735	50.735	0.08099								0	0	0	0.02992	1	5164	5164		117.81	24.616	1				75702	5672	52733	52823	83457	83457					0.09294913620101397
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	OPSCC_39_ClassI_Rep-3	3	487.79791259765625	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.22	1	50.301	49.801	50.801	0.08099								0	0	0	0.021002	1	5176	5176		129.42	47.181	1				75703	5672	52733	52823	83458	83458					0.09294913620101397
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MSMS	OPSCC_39_ClassI_Rep-3	3	487.7982177734375	2	487.797675	973.580796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.307	1	50.388	49.888	50.888	0.08099								0	0	0	0.021002	1	5192	5192		129.42	25.364	1				75704	5672	52733	52823	83459	83459					0.09294913620101397
SQTAGIAFF	9	Unmodified	_SQTAGIAFF_					0	0	0		ENST00000375847.7_1_1:15890592-15892424:+|nuORF	ENST00000375847.7_1_1:15890592-15892424:+|nuORF	ENST00000375847.7_1_1:15890592-15892424:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.3109436035156	2	471.239993	940.465432	0.080026	3.7711E-05	0.5122	0.00024137	0.59222	0.00027908	471.2389042921516	34.457	0.77756	34.457	34.129	34.906	0					35	19	3	0	0	0	0.024405	1	2577	2577		44.117	13.613	1	191080			75705	13171	52734	52824	83460	83460					-0.007181905109177933
SQTDGTLKI	9	Unmodified	_SQTDGTLKI_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.76104736328125	2	481.761289	961.508025	0.45029	0.00021693	-0.7154	-0.00034465	-0.26511	-0.00012772	481.76090381452605	41.739	0.96336	41.739	41.292	42.255	0					90	27	5	0	0	0	0.015752	5	3781	3758;3769;3781;3793;3806		158.07	33.994	1	21539000			75706	4266	52735	52825	83461;83462;83463;83464;83465	83463					0.025731598266588662
SQTDGTLKI	9	Unmodified	_SQTDGTLKI_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.7611389160156	2	481.761289	961.508025	-0.22383	-0.00010783	0.045034	2.1696E-05	-0.17879	-8.6135E-05	481.7612580448196	41.898	0.86442	41.766	41.421	42.285	-0.13219					91	24	5	0	0	0	0.01388	5	3781	3761;3771;3781;3793;3808		180.87	31.883	1	21202000			75707	4266	52735	52825	83466;83467;83468;83469;83470	83468					0.025731598266588662
SQTDGTLKI	9	Unmodified	_SQTDGTLKI_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.7611389160156	2	481.761289	961.508025	-0.18882	-9.0966E-05	0.0056351	2.7148E-06	-0.18318	-8.8251E-05	481.76122763319245	41.848	0.95978	41.871	41.464	42.424	0.023006					93	27	6	0	0	0	0.014738	5	3756	3719;3731;3742;3756;3770		163.15	29.338	1	20346000			75708	4266	52735	52825	83471;83472;83473;83474;83475	83474					0.025731598266588662
SQTGFVVLV	9	Unmodified	_SQTGFVVLV_					0	0	0		ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.27142333984375	2	475.271293	948.528032	0.56422	0.00026816	-0.34464	-0.0001638	0.21958	0.00010436	475.27096878968916	79.936	1.0535	79.936	79.573	80.626	0					62	24	4	0	0	0	0.06122	4	9927	9915;9927;9939;9952		124.59	35.218	1	3149200			75709	4673	52736	52826	83476;83477;83478;83479	83477					0.05170955557287016
SQTGFVVLV	9	Unmodified	_SQTGFVVLV_					0	0	0		ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.2714538574219	2	475.271293	948.528032	-0.56657	-0.00026927	0.69093	0.00032838	0.12436	5.9104E-05	475.27145252332144	80.123	0.96736	79.972	79.631	80.598	-0.15169					64	22	4	0	0	0	0.12602	2	9916	9916;9942		104.75	27.9	1	2754800			75710	4673	52736	52826	83480;83481	83480					0.05170955557287016
SQTGFVVLV	9	Unmodified	_SQTGFVVLV_					0	0	0		ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2718200683594	2	475.271293	948.528032	-0.20005	-9.5077E-05	0.37499	0.00017822	0.17494	8.3144E-05	475.2712855888282	79.94	1.0511	79.961	79.561	80.612	0.021439					64	24	4	0	0	0	0.15029	3	9863	9828;9850;9863		99.375	21.318	1	3567700			75711	4673	52736	52826	83482;83483;83484	83484					0.05170955557287016
SQTILIQNI	9	Unmodified	_SQTILIQNI_					0	0	0		nc|ENSG00000160201|Q01081-2|U2AF1;nc|ENSG00000160201|Q01081-3|U2AF1	nc|ENSG00000160201|Q01081-2|U2AF1	nc|ENSG00000160201|Q01081-2|U2AF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7813110351562	2	515.300581	1028.58661	0.36131	0.00018618	-0.18339	-9.4503E-05	0.17791	9.1679E-05	515.300285154199	71.958	0.4098	71.67	71.351	71.761	-0.28858					25	10	3	0	0	0	0.024283	1	8686	8686		47.96	0.043923	1	2174000			75712	18423	52737	52827	83485	83485					0.07346012131756652
SQTIPKHVF	9	Unmodified	_SQTIPKHVF_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7710571289062	2	528.795466	1055.57638	-1.2396	-0.0006555	2.298	0.0012152	1.0584	0.00055969	529.298417711997	53.931	0.39448	53.795	53.564	53.959	-0.13617					17	12	2	0	0	0	0.024541	1	5690	5690		14.137	0	1	190690			75713	4234	52738	52828	83486	83486					0.050814491971550524
SQTKLEELL	9	Unmodified	_SQTKLEELL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.81591796875	2	530.797872	1059.58119	0.57989	0.0003078	-3.4105	-0.0018103	-2.8306	-0.0015025	531.2968106400974	71.222	0.47987	71.016	70.615	71.094	-0.20613					13	10	2	0	0	0	0.024344	1	8311	8311		45.972	0	1	58495	+		75714	31835	52739	52829	83487	83487					0.05378288549309218
SQTLAPLLT	9	Unmodified	_SQTLAPLLT_					0	0	0			REV__ENST00000487676.1_1_6:32627706-32627964:-|nuORF	REV__ENST00000487676.1_1_6:32627706-32627964:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.27899169921875	2	472.276575	942.538597	0.36088	0.00017044	-1.0345	-0.00048855	-0.67358	-0.00031812	472.2758417221682	56.235	1.2855	56.235	55.249	56.535	0					51	35	2	0	0	0	0.14181	1	6263	6263		101.25	13.556	1	5548200	+		75715	33620	52740	52830	83488	83488					0.06502938211713172
SQTNPVFLKR	10	Unmodified	_SQTNPVFLKR_					0	0	0			REV__nc|ENSG00000122126|Q01968-2|OCRL	REV__nc|ENSG00000122126|Q01968-2|OCRL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.3141479492188	2	595.33803	1188.66151	-0.41526	-0.00024722	-0.37874	-0.00022548	-0.794	-0.0004727	595.338040306236	69.263	0.20919	69.021	68.832	69.041	-0.24277					7	4	2	0	0	0	0.03519	1	8026	8026		31.53	11.533	1	82297	+		75716	22627	52741	52831	83489	83489					0.07472194662977927
SQTPLLRA	8	Unmodified	_SQTPLLRA_					0	0	0		ENST00000196371.9_1_5:41862769-41870602:-|nuORF	ENST00000196371.9_1_5:41862769-41870602:-|nuORF	ENST00000196371.9_1_5:41862769-41870602:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.74072265625	2	443.261259	884.507966	-0.1306	-5.7891E-05	0.33393	0.00014802	0.20332	9.0126E-05	443.26131588601777	22.245	1.3137	22.169	21.698	23.011	-0.075296					61	27	3	0	0	0	0.027866	1	788	788		38.806	14.603	1	619630			75717	11127	52742	52832	83490	83490					0.0610920461731439
SQTPQPQRV	9	Unmodified	_SQTPQPQRV_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7775268554688	2	520.777805	1039.54106	-1.2177	-0.00063413	1.213	0.00063169	-0.0046898	-2.4424E-06	520.7783069744673	28.08	1.2821	28.08	27.58	28.862	0					80	31	4	0	0	0	0.03849	4	1604	1593;1604;1616;1629		134.81	52.57	1	2281800			75718	10512	52743	52833	83491;83492;83493;83494	83492					0.022867866693559336
SQTPQPQRV	9	Unmodified	_SQTPQPQRV_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7772216796875	2	520.777805	1039.54106	-0.61861	-0.00032216	0.59748	0.00031116	-0.021126	-1.1002E-05	520.7779673575169	28.041	1.0429	28.037	27.581	28.624	-0.0042					74	25	4	0	0	0	0.016758	4	1570	1570;1580;1592;1605		153.04	63.196	1	2306500			75719	10512	52743	52833	83495;83496;83497;83498	83495					0.022867866693559336
SQTPQPQRV	9	Unmodified	_SQTPQPQRV_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.777099609375	2	520.777805	1039.54106	-0.87045	-0.00045331	0.76505	0.00039842	-0.1054	-5.4892E-05	520.7780245943597	27.716	1.2552	27.797	27.319	28.575	0.081291					74	31	4	0	0	0	0.03201	3	1501	1489;1501;1513		139.97	68.093	1	1992600			75720	10512	52743	52833	83499;83500;83501	83500					0.022867866693559336
SQTQAMYESE	10	Unmodified	_SQTQAMYESE_					0	0	0			REV__ENSG00000154240|ENST00000535342|CEP112	REV__ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.8077392578125	2	587.240061	1172.46557	-0.41108	-0.0002414	-1.3593	-0.00079824	-1.7704	-0.0010396	587.2388186556642	75.498	0.6214	75.322	75.113	75.734	-0.17548					27	15	3	0	0	0	0.03519	1	8975	8975		40.058	7.2458	1	235980	+		75721	24949	52744	52834	83502	83502					-0.11376603363873983
SQTSEHQSEEA	11	Unmodified	_SQTSEHQSEEA_					0	0	0			REV__ENSG00000283039|ENST00000634670|KLF18	REV__ENSG00000283039|ENST00000634670|KLF18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.5633239746094	3	411.505706	1231.49529	0.61066	0.00025129	-3.4686	-0.0014274	-2.8579	-0.0011761	411.5041955192782	32.548	0.12443	32.356	32.293	32.417	-0.19261					4	2	2	0	0	0	0.02473	1	2253	2253		21.032	3.5642	1	30093	+		75722	29241	52745	52835	83503	83503					-0.11119948094142273
SQTTRLLALL	10	Unmodified	_SQTTRLLALL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2693481445312	2	558.342781	1114.67101	-0.84625	-0.0004725	0.36229	0.00020228	-0.48396	-0.00027022	558.3428780405752	33.076	0.31774	32.911	32.76	33.077	-0.16565					10	7	2	0	0	0	0.03519	1	2309	2309		14.137	3.8719	1	84316			75723	7346	52746	52836	83504	83504					0.11825962948501001
SQVCSPPLS	9	Unmodified	_SQVCSPPLS_					0	0	0			REV__ENST00000430421.1_19:54742365-54742726:-|nuORF	REV__ENST00000430421.1_19:54742365-54742726:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.7823791503906	2	459.223485	916.432418	1.8015	0.0008273	2.4457	0.0011231	4.2473	0.0019504	459.22454266949006	23.493	2.2209	23.302	21.528	23.749	-0.19117					104	48	3	0	0	0	0.024209	1	690	690		39.253	0	1	1527300	+		75724	32355	52747	52837	83505	83505					-0.029141406252620072
SQVDFNVSM	9	Unmodified	_SQVDFNVSM_					0	0	0			REV__nc|ENSG00000052841|Q96AE7-2|TTC17	REV__nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7686157226562	2	513.731674	1025.4488	-0.56342	-0.00028945	-3.5442	-0.0018208	-4.1077	-0.0021102	513.729597558577	39.3	0.33714	39.076	38.926	39.263	-0.22311					13	8	2	0	0	0	0.024418	1	3298	3298		17.468	0.99486	1	77279	+		75725	20175	52748	52838	83506	83506					-0.06291059459158532
SQVDFNVSM	9	Unmodified	_SQVDFNVSM_					0	0	0			REV__nc|ENSG00000052841|Q96AE7-2|TTC17	REV__nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.731674	1025.4488	-0.75251	-0.00038659	-2.9426	-0.0015117	-3.6952	-0.0018983	513.7297462889023	39.274	0.37103	39.11	38.971	39.342	-0.16458	0.001898	0.0005649	NaN	17.468	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101550	+		75726	20175	52748	52838							-0.06291059459158532
SQVDHFRPA	9	Unmodified	_SQVDHFRPA_					0	0	0		nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.800048828125	2	528.764697	1055.51484	-1.3918	-0.00073591	-3.974	-0.0021013	-5.3657	-0.0028372	528.7636359627879	83.79	0.73814	83.79	83.52	84.258	0					21	16	2	0	0	0	0.024374	1	10466	10466		49.442	7.0454	1	46812			75727	10053	52749	52839	83507	83507					-0.010694825020891585
SQVEILQRV	9	Unmodified	_SQVEILQRV_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3104858398438	2	536.31148	1070.60841	-0.37511	-0.00020118	-0.37941	-0.00020348	-0.75452	-0.00040466	536.3112182583395	53.677	0.63875	53.677	53.404	54.043	0					49	17	4	0	0	0	0.016249	3	5822	5810;5822;5835		155.58	48.577	1	4927900			75728	3621	52750	52840	83508;83509;83510	83509					0.07592816880332975
SQVEILQRV	9	Unmodified	_SQVEILQRV_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3106079101562	2	536.31148	1070.60841	-0.90093	-0.00048318	0.11473	6.1531E-05	-0.7862	-0.00042165	536.3114821247096	53.802	0.60856	53.655	53.346	53.954	-0.14723					58	16	5	0	0	0	0.079716	3	5805	5795;5805;5823		117.81	35.571	1	5490400			75729	3621	52750	52840	83511;83512;83513	83512					0.07592816880332975
SQVEILQRV	9	Unmodified	_SQVEILQRV_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.3111572265625	2	536.31148	1070.60841	-1.2365	-0.00066316	0.69276	0.00037154	-0.54377	-0.00029163	536.3117980036959	53.447	0.60232	53.543	53.336	53.938	0.095669					50	16	4	0	0	0	0.079716	2	5707	5707;5718		117.81	38.098	1	4381700			75730	3621	52750	52840	83514;83515	83514					0.07592816880332975
SQVEMTGSSV	10	Unmodified	_SQVEMTGSSV_					0	0	0		ENSG00000130751|ENST00000602212|NPAS1	ENSG00000130751|ENST00000602212|NPAS1	ENSG00000130751|ENST00000602212|NPAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7503662109375	2	512.734414	1023.45428	-0.77091	-0.00039527	-2.5141	-0.001289	-3.285	-0.0016843	512.732958585432	69.304	0.94926	69.04	68.463	69.412	-0.26443					29	14	3	0	0	0	0.03519	1	8012	8012		22.58	10.373	1	263030			75731	4451	52751	52841	83516	83516					-0.05651380667336525
SQVEQQQLI	9	Unmodified	_SQVEQQQLI_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.7850952148438	2	536.785296	1071.55604	-0.81548	-0.00043774	0.33259	0.00017853	-0.48289	-0.00025921	536.785379962048	52.849	0.95489	52.849	52.554	53.509	0					58	25	4	0	0	0	0.079716	1	5674	5674		117.81	29.634	1	2705400			75732	6550	52752	52842	83517	83517					0.023122337467157195
SQVLEKLW	8	Unmodified	_SQVLEKLW_					0	0	0		ENST00000504340.1_1_4:185369970-185370015:-|nuORF	ENST00000504340.1_1_4:185369970-185370015:-|nuORF	ENST00000504340.1_1_4:185369970-185370015:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2860412597656	2	501.784567	1001.55458	-0.20453	-0.00010263	0.091426	4.5876E-05	-0.11311	-5.6756E-05	501.78412106519426	63.197	0.81959	62.939	62.606	63.425	-0.25824					45	20	3	0	0	0	0.89627	1	7127	7127		51.335	3.4199	1	2321100			75733	15712	52753	52843	83518	83518					0.05386644448606148
SQVLLLDNP	9	Unmodified	_SQVLLLDNP_					0	0	0		GGA2|p.M569V|1|0.43|ENSG00000103365|chr16:23468912-23468912|T/C|missense_variant	GGA2|p.M569V|1|0.43|ENSG00000103365|chr16:23468912-23468912|T/C|missense_variant	GGA2|p.M569V|1|0.43|ENSG00000103365|chr16:23468912-23468912|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.31903076171875	2	499.779482	997.544411	-0.14015	-7.0046E-05	-0.44902	-0.00022441	-0.58918	-0.00029446	499.77977683633327	96.347	0.95268	96.347	96.194	97.147	0					26	21	2	0	0	0	0.024418	1	12339	12339		17.468	0	1	86284			75734	17677	52754	52844	83519	83519					0.045540367233684265
SQVPRDTHT	9	Unmodified	_SQVPRDTHT_					0	0	0		SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|29|2|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.28662109375	2	520.759612	1039.50467	-0.72528	-0.00037769	-0.00085988	-4.4779E-07	-0.72614	-0.00037814	520.7592687710046	36.165	0.20523	36.203	36.133	36.338	0.038044					7	5	2	0	0	0	0.024527	1	2779	2779		39.253	10.999	1	52309			75735	37994	52755	52845	83520	83520					-0.013500902273563042
SQVRHLYDTGE	11	Unmodified	_SQVRHLYDTGE_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.R1506Efs*99|1|0.57|ENSG00000243156|chr22:17818146-17818146|G/-|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3	ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.5471496582031	3	435.545836	1303.61568	-0.569	-0.00024783	3.5871	0.0015624	3.0181	0.0013145	435.5473061812439	29.536	1.1486	29.363	28.981	30.13	-0.17258					70	26	4	0	0	0	0.96481	1	1818	1818		44.639	5.8858	1	1991200			75736	10806;18759	52756	52846	83521	83521					-0.023984953098988626
SQVSDYDYF	9	Unmodified	_SQVSDYDYF_					0	0	0		nc|ENSG00000170873|O43312-2|MTSS1;ENST00000520771.1_1_8:125565235-125568613:-|nuORF;TATDN1-MTSS1|1|fusion;nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7845458984375	2	562.232561	1122.45057	-0.085057	-4.7822E-05	-2.9262	-0.0016452	-3.0112	-0.001693	562.2309394210548	46.68	0.36551	46.416	46.234	46.6	-0.26432					14	9	2	0	0	0	0.024484	1	4488	4488		37.812	26.946	1	87877			75737	18508	52757	52847	83522	83522					-0.10575727169566562
SQVSDYDYF	9	Unmodified	_SQVSDYDYF_					0	0	0		nc|ENSG00000170873|O43312-2|MTSS1;ENST00000520771.1_1_8:125565235-125568613:-|nuORF;TATDN1-MTSS1|1|fusion;nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	562.232561	1122.45057	-0.57498	-0.00032327	-3.0385	-0.0017083	-3.6135	-0.0020316	562.2308445199913	46.767	0.45411	46.614	46.445	46.899	-0.15301	0.03631	-0.00017533	NaN	17.468	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128040			75738	18508	52757	52847							-0.10575727169566562
SQVSDYDYF	9	Unmodified	_SQVSDYDYF_					0	0	0		nc|ENSG00000170873|O43312-2|MTSS1;ENST00000520771.1_1_8:125565235-125568613:-|nuORF;TATDN1-MTSS1|1|fusion;nc|ENSG00000170873|O43312-4|MTSS1;ENSG00000170873|ENST00000518547|MTSS1;nc|ENSG00000170873|O43312-5|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	nc|ENSG00000170873|O43312-2|MTSS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	562.232561	1122.45057	-0.43901	-0.00024682	-2.7329	-0.0015365	-3.1719	-0.0017834	562.2310621148716	46.651	0.46918	46.703	46.441	46.91	0.051395	0.12535	0.00016827	NaN	17.468	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110780			75739	18508	52757	52847							-0.10575727169566562
SQVSLSLSSV	10	Unmodified	_SQVSLSLSSV_					0	0	0		CON__Q1RMK2;CON__ENSEMBL:ENSBTAP00000011227;CON__ENSEMBL:ENSBTAP00000033053	CON__Q1RMK2	CON__Q1RMK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7514953613281	2	503.774396	1005.53424	0.076841	3.871E-05	0.40568	0.00020437	0.48253	0.00024308	503.77442827537095	33.548	0.70356	33.604	33.35	34.054	0.056572					30	16	2	0	0	0	0.03519	1	2376	2376		41.427	0	1	304570		+	75740	541	52758	52848	83523	83523					0.0316942899814876
SQVWRCAPAI	10	Unmodified	_SQVWRCAPAI_					0	0	0		SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|67|3|anti-sense	SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|67|3|anti-sense	SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|67|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.7904663085938	2	565.792401	1129.57025	0.68277	0.00038631	-0.80831	-0.00045734	-0.12554	-7.1029E-05	565.7917958061987	100.36	1.4556	100.23	100.05	101.5	-0.12504					47	40	2	0	0	0	1.0616	1	12489	12489		37.812	2.6333	1	519590			75741	37978	52759	52849	83524	83524					0.010646076940020066
SQWDSVLHI	9	Unmodified	_SQWDSVLHI_					0	0	0		nc|ENSG00000196275|Q86UP8-6|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7748413085938	2	542.774731	1083.53491	-0.31677	-0.00017193	0.33534	0.00018202	0.018577	1.0083E-05	542.7747543379921	72.511	1.0154	72.511	72.131	73.146	0					72	24	4	0	0	0	0.043667	2	8824	8824;8835		131.03	40.662	1	5408600			75742	8465	52760	52850	83525;83526	83525					-0.003517315621365924
SQWDSVLHI	9	Unmodified	_SQWDSVLHI_					0	0	0		nc|ENSG00000196275|Q86UP8-6|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.7750244140625	2	542.774731	1083.53491	0.0040012	2.1718E-06	-0.098255	-5.3331E-05	-0.094254	-5.1159E-05	542.7745458402621	72.847	0.97757	72.565	72.18	73.157	-0.28124					66	23	4	0	0	0	0.027092	3	8840	8823;8840;8852		143.89	41.969	1	5073100			75743	8465	52760	52850	83527;83528;83529	83528					-0.003517315621365924
SQWDSVLHI	9	Unmodified	_SQWDSVLHI_					0	0	0		nc|ENSG00000196275|Q86UP8-6|GTF2IRD2;ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.7747802734375	2	542.774731	1083.53491	-0.16237	-8.8132E-05	0.16849	9.1454E-05	0.0061199	3.3217E-06	542.7746642371695	72.527	1.0483	72.537	72.169	73.217	0.0097733					77	25	5	0	0	0	0.16638	1	8762	8762		95.815	13.575	1	4748800			75744	8465	52760	52850	83530	83530					-0.003517315621365924
SQWEIFPP	8	Unmodified	_SQWEIFPP_					0	0	0		nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7799987792969	2	502.247818	1002.48108	-0.49309	-0.00024765	-2.3585	-0.0011845	-2.8516	-0.0014322	502.24690851338875	53.083	1.0289	52.936	52.682	53.711	-0.14724					44	27	3	0	0	0	0.027866	1	5732	5732		55.504	13.108	1	730040			75745	4104	52761	52851	83531	83531					-0.02005903993847369
SQWGGSPLTD	10	Unmodified	_SQWGGSPLTD_					0	0	0		ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2689819335938	2	524.240721	1046.46689	-1.2	-0.00062907	-3.9725	-0.0020825	-5.1724	-0.0027116	524.2392034818565	35.088	0.22042	35.066	35.013	35.233	-0.021763					7	5	2	0	0	0	0.03519	1	2672	2672		13.454	3.1888	1	95659			75746	3188	52762	52852	83532	83532					-0.054486012128108996
SQWIIGYLL	9	Unmodified	_SQWIIGYLL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.781494140625	2	546.808042	1091.60153	-0.20209	-0.0001105	-2.7503	-0.0015039	-2.9523	-0.0016144	546.8063983682844	75.457	0.43594	75.281	75.071	75.507	-0.17548					14	10	2	0	0	0	0.024541	1	8924	8924		17.365	0	1	163380			75747	4666	52763	52853	83533	83533					0.059395039997752974
SQWLDVKFKLD	11	Unmodified	_SQWLDVKFKLD_					0	0	0		ENST00000488824.1_1_1:110279695-110282569:-|nuORF;ENSG00000134202|ENST00000361066|GSTM3	ENST00000488824.1_1_1:110279695-110282569:-|nuORF	ENST00000488824.1_1_1:110279695-110282569:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2685852050781	3	460.25036	1377.72925	-0.25849	-0.00011897	-1.8721	-0.00086162	-2.1306	-0.00098059	460.249336075805	39.859	0.34636	39.709	39.513	39.859	-0.1497					19	8	3	0	0	0	0.024746	1	3432	3432		26.75	10.743	1	196690			75748	4764	52764	52854	83534	83534					0.05549599803134697
SQWLDVKFKLD	11	Unmodified	_SQWLDVKFKLD_					0	0	0		ENST00000488824.1_1_1:110279695-110282569:-|nuORF;ENSG00000134202|ENST00000361066|GSTM3	ENST00000488824.1_1_1:110279695-110282569:-|nuORF	ENST00000488824.1_1_1:110279695-110282569:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.26861572265625	3	460.25036	1377.72925	-0.47363	-0.00021799	-2.1034	-0.0009681	-2.577	-0.0011861	460.249181268581	40.06	0.45999	39.83	39.66	40.12	-0.23021					16	11	2	0	0	0	0.024789	1	3435	3435		15.921	0	1	121270			75749	4764	52764	52854	83535	83535					0.05549599803134697
SQWNVTIAQ	9	Unmodified	_SQWNVTIAQ_					0	0	0		ENST00000445003.5_1_20:48884185-48894863:+|nuORF	ENST00000445003.5_1_20:48884185-48894863:+|nuORF	ENST00000445003.5_1_20:48884185-48894863:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7933959960938	2	523.766906	1045.51926	-0.94195	-0.00049336	2.8133	0.0014735	1.8713	0.00098013	524.2715295548886	37.622	0.45821	37.413	37.232	37.691	-0.2092					18	11	2	0	0	0	0.024261	1	3061	3061		45.972	0	1	110590			75750	14431	52765	52855	83536	83536					-0.0016801807919364364
SQWSLQHEI	9	Unmodified	_SQWSLQHEI_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.2766723632812	2	564.277638	1126.54072	0.39491	0.00022284	-1.0204	-0.00057577	-0.62545	-0.00035293	564.276965322382	55.354	1.2349	55.354	54.869	56.104	0					79	34	4	0	0	0	0.013442	2	6117	6107;6117		199.89	98.639	1	4208900			75751	1788	52766	52856	83537;83538	83538					-0.017486330504880243
SQWSLQHEI	9	Unmodified	_SQWSLQHEI_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.2750244140625	2	564.277638	1126.54072	-0.38231	-0.00021573	0.089376	5.0433E-05	-0.29294	-0.0001653	564.2776131911809	55.42	0.82043	55.264	54.994	55.814	-0.15602					56	22	3	0	0	0	0.014478	3	6088	6088;6100;6111		218.73	113.98	1	4551200			75752	1788	52766	52856	83539;83540;83541	83539					-0.017486330504880243
SQWSLQHEI	9	Unmodified	_SQWSLQHEI_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.2737426757812	2	564.277638	1126.54072	-1.2357	-0.0006973	0.9147	0.00051614	-0.32104	-0.00018116	564.2780595189025	55.023	0.78935	55.121	54.845	55.634	0.098015					58	21	4	0	0	0	0.014478	3	5978	5978;5989;6001		164.46	71.26	1	4259700			75753	1788	52766	52856	83542;83543;83544	83542					-0.017486330504880243
SQYASDRGY	9	Unmodified	_SQYASDRGY_					0	0	0			REV__ENSG00000102119|ENST00000369842|EMD	REV__ENSG00000102119|ENST00000369842|EMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.8004150390625	2	523.73052	1045.44649	-0.82811	-0.00043371	-2.5663	-0.0013441	-3.3945	-0.0017778	523.7291082147124	19.954	0.49034	19.954	19.735	20.225	0					15	9	2	0	0	0	0.024523	1	461	461		10.265	0	1	51542	+		75754	21289	52767	52857	83545	83545					-0.07441771872618119
SQYESSESSPS	11	Unmodified	_SQYESSESSPS_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	594.3102416992188	2	594.238572	1186.46259	-1.0638	-0.00063218	1.6622	0.00098776	0.59838	0.00035558	594.2395385087442	61.333	0.65005	61.333	61.108	61.758	0					20	16	2	0	0	0	0.024745	1	7144	7144		41.427	13.345	1	220240	+		75755	26684	52768	52858	83546	83546					-0.12318155217030835
SQYESSESSPS	11	Unmodified	_SQYESSESSPS_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	594.238572	1186.46259	-0.5346	-0.00031768	1.1551	0.00068641	0.6205	0.00036873	594.2390620865568	61.545	0.34179	61.318	61.153	61.495	-0.22663	-0.062785	-0.00012774	NaN	27.047	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283590	+		75756	26684	52768	52858							-0.12318155217030835
SQYESSESSPS	11	Unmodified	_SQYESSESSPS_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	594.238572	1186.46259	0.20538	0.00012205	0.20974	0.00012463	0.41512	0.00024668	594.2385283857398	61.264	0.41708	61.335	61.095	61.512	0.071125	-0.045643	-0.0012513	NaN	27.047	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302780	+		75757	26684	52768	52858							-0.12318155217030835
SQYESSESSPS	11	Unmodified	_SQYESSESSPS_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	594.238572	1186.46259	-0.59771	-0.00035518	0.96758	0.00057498	0.36987	0.00021979	594.2388886657736	61.669	0.33067	61.455	61.293	61.624	-0.21375	0.074352	-0.0003506	NaN	27.047	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104360	+		75758	26684	52768	52858							-0.12318155217030835
SQYESSESSPS	11	Unmodified	_SQYESSESSPS_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	594.238572	1186.46259	-1.5256	-0.00090656	2.1151	0.0012569	0.58951	0.00035031	594.239846529433	61.552	0.41341	61.374	61.162	61.576	-0.17781	-0.006758	0.0010132	NaN	27.047	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117680	+		75759	26684	52768	52858							-0.12318155217030835
SQYESSESSPS	11	Unmodified	_SQYESSESSPS_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	594.238572	1186.46259	-0.64061	-0.00038067	1.9771	0.0011749	1.3365	0.00079419	594.239947685071	61.727	0.40857	61.47	61.258	61.667	-0.25725	0.088982	0.00084918	NaN	27.047	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146390	+		75760	26684	52768	52858							-0.12318155217030835
SQYHFISV	8	Unmodified	_SQYHFISV_					0	0	0			REV__nc|ENSG00000160588|Q6UWV2-2|MPZL3	REV__nc|ENSG00000160588|Q6UWV2-2|MPZL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.77996826171875	2	490.745442	979.476331	-0.42105	-0.00020663	-2.3442	-0.0011504	-2.7653	-0.0013571	490.74413176015037	26.738	0.45576	26.574	26.382	26.837	-0.16331					16	10	2	0	0	0	0.027866	1	1425	1425		31.955	0	1	75745	+		75761	25328	52769	52859	83547	83547					-0.014227881366196016
SQYRGDYDA	9	Unmodified	_SQYRGDYDA_					0	0	0		ENST00000481106.5_1_X:80458072-80552723:+|nuORF;ENSG00000131171|ENST00000373212|SH3BGRL;ENST00000474113.1_1_X:80511064-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7581176757812	2	537.727978	1073.4414	-0.82589	-0.0004441	1.0618	0.00057098	0.23595	0.00012688	537.7285992310509	39.427	0.50111	39.204	38.961	39.462	-0.22311					25	12	3	0	0	0	0.024511	1	3340	3340		25.574	14.063	1	285780			75762	4503	52770	52860	83548	83548					-0.09238075735243001
SRAAFNLA	8	Unmodified	_SRAAFNLA_					0	0	0			REV__ENSG00000079616|ENST00000160827|KIF22	REV__ENSG00000079616|ENST00000160827|KIF22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.7581787109375	2	425.232502	848.450451	-0.064925	-2.7608E-05	0.34969	0.0001487	0.28477	0.00012109	425.232516423427	31.873	0.71607	31.716	31.529	32.245	-0.15772					29	16	2	0	0	0	0.027866	1	2122	2122		19.36	11.67	1	400130	+		75763	20641	52771	52861	83549	83549					0.020163624117572
SRAAGKAR	8	Unmodified	_SRAAGKAR_					0	0	0		ENST00000376723.7_1_2:128848788-128848986:+|nuORF	ENST00000376723.7_1_2:128848788-128848986:+|nuORF	ENST00000376723.7_1_2:128848788-128848986:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	408.7322998046875	2	408.743568	815.472583	0.13559	5.5421E-05	-2.6793	-0.0010952	-2.5437	-0.0010397	408.74264720661233	31.068	0.21225	31.068	31.003	31.216	0					7	4	2	0	0	0	0.027866	1	2057	2057		11.511	3.8207	1	76431			75764	13187	52772	52862	83550	83550					0.05746586880172799
SRAAGSAQGNN	11	Unmodified	_SRAAGSAQGNN_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2861938476562	2	516.744493	1031.47443	0.21646	0.00011185	-0.01516	-7.8339E-06	0.2013	0.00010402	516.7444129545755	52.72	0.86493	52.462	52.21	53.075	-0.25838					37	21	3	0	0	0	0.024759	1	5506	5506		40.058	18.098	1	194940			75765	4316	52773	52863	83551	83551					-0.04004448892533219
SRAAHIKS	8	Unmodified	_SRAAHIKS_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A;REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.26934814453125	2	435.251226	868.487899	-0.5607	-0.00024405	0.66153	0.00028793	0.10083	4.3888E-05	435.25138068195366	23.648	0.71955	23.588	23.267	23.987	-0.060862					28	16	2	0	0	0	0.027866	1	927	927		37.159	5.2042	1	341870	+		75766	24774;30646	52774	52864	83552	83552					0.04839453677379879
SRAAHIKS	8	Unmodified	_SRAAHIKS_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A;REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2691955566406	2	435.251226	868.487899	0.071614	3.117E-05	0.66276	0.00028847	0.73438	0.00031964	435.25130810491964	23.534	0.80601	23.61	23.195	24.001	0.076239					37	18	3	0	0	0	0.027866	1	884	884		21.96	10.449	1	333820	+		75767	24774;30646	52774	52864	83553	83553					0.04839453677379879
SRAAHIKS	8	Unmodified	_SRAAHIKS_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A;REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	435.251226	868.487899	0.22794	9.9213E-05	-1.0215	-0.00044463	-0.79359	-0.00034541	435.2505964473141	23.889	0.44244	23.674	23.467	23.909	-0.2151	0.04785	-0.00091969	NaN	21.96	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37294	+		75768	24774;30646	52774	52864							0.04839453677379879
SRAAHIKS	8	Unmodified	_SRAAHIKS_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A;REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	435.251226	868.487899	-0.14234	-6.1955E-05	-2.6984	-0.0011745	-2.8408	-0.0012365	435.2507586324321	23.764	0.51159	23.584	23.356	23.868	-0.17989	-0.041785	-0.0023794	NaN	21.96	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69988	+		75769	24774;30646	52774	52864							0.04839453677379879
SRAAHIKS	8	Unmodified	_SRAAHIKS_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A;REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	435.251226	868.487899	2.2788	0.00099187	-2.3215	-0.0010104	-0.042625	-1.8553E-05	435.2501882181625	23.829	0.56112	23.638	23.321	23.883	-0.19117	0.011662	-0.0020513	NaN	21.96	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62591	+		75770	24774;30646	52774	52864							0.04839453677379879
SRAAIIVT	8	Unmodified	_SRAAIIVT_					0	0	0			REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.195068359375	2	415.758352	829.502152	-0.55582	-0.00023109	-0.92394	-0.00038414	-1.4798	-0.00061522	415.7577317200095	39.44	0.46342	39.216	38.999	39.462	-0.22311					14	11	2	0	0	0	0.027866	1	3365	3365		42.396	9.5837	1	48154	+		75771	21117	52775	52865	83554	83554					0.08058106105670504
SRAAIIVT	8	Unmodified	_SRAAIIVT_					0	0	0			REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	415.758352	829.502152	-0.82091	-0.0003413	1.2742	0.00052976	0.45328	0.00018845	415.7585951593075	39.34	0.40577	39.175	38.898	39.304	-0.16458	-0.00076029	0.00072347	NaN	42.396	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70829	+		75772	21117	52775	52865							0.08058106105670504
SRAAIIVT	8	Unmodified	_SRAAIIVT_					0	0	0			REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	REV__MLC1|p.L228Sfs*62|1|0.19|ENSG00000100427|chr22:50074244-50074248|GAGAG/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	415.758352	829.502152	0.20608	8.5679E-05	-0.14714	-6.1174E-05	0.058941	2.4505E-05	415.75844342242567	39.362	0.33281	39.137	38.909	39.242	-0.2257	-0.039492	-0.00045839	NaN	42.396	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46163	+		75773	21117	52775	52865							0.08058106105670504
SRAAPSVSF	9	Unmodified	_SRAAPSVSF_					0	0	0		ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2612609863281	2	461.243067	920.47158	-0.43856	-0.00020228	0.49378	0.00022775	0.05522	2.547E-05	461.2432184006981	28.854	1.1194	28.858	28.01	29.129	0.0031376					46	26	3	0	0	0	0.024319	1	1601	1601		47.657	7.0847	1	822560			75774	13543	52776	52866	83555	83555					0.00816327720622212
SRAAPSVSF	9	Unmodified	_SRAAPSVSF_					0	0	0		ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	461.243067	920.47158	-0.56567	-0.00026091	1.2119	0.00055898	0.64623	0.00029807	461.2435479744737	28.843	0.80601	28.674	28.048	28.854	-0.16897	-0.044518	0.00064037	NaN	47.657	20	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80770			75775	13543	52776	52866							0.00816327720622212
SRAAPSVSF	9	Unmodified	_SRAAPSVSF_					0	0	0		ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	461.243067	920.47158	-0.39121	-0.00018044	1.2866	0.00059343	0.89538	0.00041299	461.2435766906561	28.813	0.50614	28.663	28.363	28.869	-0.14952	-0.05511	0.00070928	NaN	47.657	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72671			75776	13543	52776	52866							0.00816327720622212
SRADEEYN	8	Unmodified	_SRADEEYN_					0	0	0			REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	REV__FER|p.L749Vfs*10|1|0.05|ENSG00000151422|chr5:109186237-109186238|-/ATAGT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.29010009765625	2	492.206878	982.399203	-0.3402	-0.00016745	-0.12762	-6.2817E-05	-0.46782	-0.00023027	492.20900799081284	44.918	0.49173	44.962	44.654	45.145	0.043877					13	13	2	0	0	0	0.027866	1	4236	4236		73.975	5.49	1	46732	+		75777	24769	52777	52867	83556	83556					-0.09270051143619185
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3036499023438	2	547.303655	1092.59276	0.84905	0.00046469	-1.2924	-0.00070736	-0.44339	-0.00024267	547.3029455906837	37.138	0.78622	37.138	36.846	37.632	0					62	20	5	0	0	0	0.11727	2	2994	2994;3006		106.68	18.368	1	8090700			75778	2475	52778	52868	83557;83558	83557					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3038940429688	2	547.303655	1092.59276	-0.36677	-0.00020073	-0.021201	-1.1603E-05	-0.38797	-0.00021234	547.3036378594253	36.981	0.75413	36.918	36.588	37.342	-0.063389					69	19	5	0	0	0	0.22379	4	2972	2949;2960;2972;2985		85.862	24.89	1	7570100			75779	2475	52778	52868	83559;83560;83561;83562	83561					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.3037719726562	2	547.303655	1092.59276	-0.76288	-0.00041753	0.26182	0.0001433	-0.50106	-0.00027423	547.303814195395	37.095	0.8776	37.127	36.838	37.715	0.032269					71	22	4	0	0	0	0.16539	4	2929	2929;2939;2950;2963		96.034	13.729	1	6758800			75780	2475	52778	52868	83563;83564;83565;83566	83563					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3035888671875	2	547.303655	1092.59276	-0.014614	-7.9982E-06	0.1038	5.6812E-05	0.089189	4.8813E-05	547.3036205754988	37.252	1.0608	37.059	36.735	37.796	-0.193					68	27	4	0	0	0	0.54416	1	2971	2971		56.434	10.482	1	4318700			75781	2475	52778	52868	83567	83567					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.3035278320312	2	547.303655	1092.59276	-1.034	-0.00056593	0.71821	0.00039308	-0.31582	-0.00017285	547.3040135815362	37.253	0.96876	37.034	36.647	37.615	-0.2195					55	24	3	0	0	0	0.14181	2	2959	2959;2970		101.25	18.948	1	4289300			75782	2475	52778	52868	83568;83569	83568					0.050165303632638825
SRADLIKQY	9	Unmodified	_SRADLIKQY_					0	0	0		nc|ENSG00000103160|Q3SXM5-2|HSDL1;ENSG00000103160|ENST00000219439|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	nc|ENSG00000103160|Q3SXM5-2|HSDL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3036499023438	2	547.303655	1092.59276	-0.31394	-0.00017182	0.77694	0.00042522	0.463	0.0002534	547.3036385442949	37.203	1.0057	36.994	36.685	37.691	-0.2092					78	25	5	0	0	0	0.30449	1	2950	2950		75.043	9.2401	1	3623500			75783	2475	52778	52868	83570	83570					0.050165303632638825
SRAEAEAQAE	10	Unmodified	_SRAEAEAQAE_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.30224609375	2	531.246535	1060.47852	-0.2001	-0.0001063	3.816	0.0020273	3.6159	0.001921	531.2483619584636	34.187	0.69866	33.963	33.6	34.299	-0.22412					43	17	4	0	0	0	0.03519	1	2510	2510		37.812	13.292	1	1020200			75784	8390	52779	52869	83571	83571					-0.049304041894629336
SRAEEDLSI	9	Unmodified	_SRAEEDLSI_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF;ENST00000468948.1_1_2:182388205-182388999:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2740173339844	2	510.253828	1018.4931	-0.2737	-0.00013966	3.3488	0.0017087	3.0751	0.0015691	510.2550428896818	76.632	0.25817	76.464	76.309	76.567	-0.16854					10	5	3	0	0	0	0.024495	1	9098	9098		26.693	3.6504	1	115750			75785	3420	52780	52870	83572	83572					-0.015403320413270194
SRAELFLW	8	Unmodified	_SRAELFLW_					0	0	0		ENST00000540564.5_1_1:179322848-179323091:+|nuORF	ENST00000540564.5_1_1:179322848-179323091:+|nuORF	ENST00000540564.5_1_1:179322848-179323091:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.29681396484375	2	511.276909	1020.53927	-0.13968	-7.1414E-05	-0.3872	-0.00019797	-0.52688	-0.00026938	511.27653492505914	63.282	0.78106	63.031	62.809	63.59	-0.25141					29	20	2	0	0	0	0.027866	1	7335	7335		24.203	1.1603	1	337180			75786	16425	52781	52871	83573	83573					0.029817776514164507
SRAFFLISV	9	Unmodified	_SRAFFLISV_					0	0	0		TMEM202|p.Q116L|1|0.16|ENSG00000187806|chr15:72406611-72406611|A/T|missense_variant;ENSG00000187806|ENST00000341689|TMEM202	TMEM202|p.Q116L|1|0.16|ENSG00000187806|chr15:72406611-72406611|A/T|missense_variant	TMEM202|p.Q116L|1|0.16|ENSG00000187806|chr15:72406611-72406611|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.77685546875	2	520.300384	1038.58622	-0.62523	-0.00032531	-3.7533	-0.0019529	-4.3786	-0.0022782	520.2982993095675	28.238	0.49222	28.234	27.966	28.458	-0.0042019					17	11	2	0	0	0	0.024527	1	1605	1605		24.519	7.1542	1	137160			75787	9662	52782	52872	83574	83574					0.06846637202556849
SRAFFLISV	9	Unmodified	_SRAFFLISV_					0	0	0		TMEM202|p.Q116L|1|0.16|ENSG00000187806|chr15:72406611-72406611|A/T|missense_variant;ENSG00000187806|ENST00000341689|TMEM202	TMEM202|p.Q116L|1|0.16|ENSG00000187806|chr15:72406611-72406611|A/T|missense_variant	TMEM202|p.Q116L|1|0.16|ENSG00000187806|chr15:72406611-72406611|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.7772827148438	2	520.300384	1038.58622	-0.69645	-0.00036236	-3.4336	-0.0017865	-4.1301	-0.0021489	520.2984231703449	27.994	0.49669	28.075	27.833	28.329	0.081104					17	11	2	0	0	0	0.024527	1	1513	1513		39.253	7.298	1	150880			75788	9662	52782	52872	83575	83575					0.06846637202556849
SRAGAGVTAR	10	Unmodified	_SRAGAGVTAR_					0	0	0		ENST00000574992.5_1_17:79870294-79870651:-|nuORF	ENST00000574992.5_1_17:79870294-79870651:-|nuORF	ENST00000574992.5_1_17:79870294-79870651:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.81048583984375	2	473.264865	944.515176	-1.2045	-0.00057003	2.5628	0.0012129	1.3584	0.00064287	473.2660923029439	21.66	0.5338	21.447	21.167	21.701	-0.2128					16	10	2	0	0	0	0.03519	1	678	678		54.722	12.326	1	49761			75789	17093	52783	52873	83576	83576					0.040699372177641635
SRAGGKLLK	9	Unmodified	_SRAGGKLLK_					0	0	0			REV__ENST00000418814.6_2_6:71123011-71123149:+|nuORF	REV__ENST00000418814.6_2_6:71123011-71123149:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2870178222656	2	465.298176	928.581799	-0.1084	-5.0437E-05	4.3182	0.0020092	4.2098	0.0019588	465.3007525075407	75.48	0.56482	75.208	75.018	75.582	-0.27266					31	13	3	0	0	0	0.022482	1	8929	8929		93.143	29.837	1	922960	+		75790	32129	52784	52874	83577	83577					0.11465172779651311
SRAGHKASL	9	Unmodified	_SRAGHKASL_					0	0	0			REV__ENST00000605778.1_1_7:35735152-35735278:+|nuORF	REV__ENST00000605778.1_1_7:35735152-35735278:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7982177734375	2	463.761958	925.509363	0.072406	3.3579E-05	1.6175	0.00075014	1.6899	0.00078372	463.76066030948914	41.539	0.22002	41.539	41.432	41.652	0					7	5	2	0	0	0	0.024374	1	3755	3755		32.812	15.447	1	42996	+		75791	35921	52785	52875	83578	83578					0.043628387060948626
SRAGLYLRE	9	Unmodified	_SRAGLYLRE_					0	0	0		nc|ENSG00000124224|Q9P1A2|PPP4R1L;ENST00000244070.7_1_20:56821016-56884481:-|nuORF;nc|ENSG00000124224|Q9P1A2-3|PPP4R1L;ENST00000493688.5_1_20:56821016-56847830:-|nuORF;ENST00000495058.5_1_20:56822334-56847858:-|nuORF	nc|ENSG00000124224|Q9P1A2|PPP4R1L	nc|ENSG00000124224|Q9P1A2|PPP4R1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7958374023438	2	532.795998	1063.57744	-0.78611	-0.00041883	0.16508	8.7956E-05	-0.62102	-0.00033088	532.7960022946929	35.61	1.0392	35.654	35.305	36.344	0.04406					71	27	4	0	0	0	0.84115	1	2693	2693		36.447	1.2947	1	2638400			75792	11300	52786	52876	83579	83579					0.048196635660815446
SRAGSVKKV	9	Unmodified	_SRAGSVKKV_					0	0	0		ENST00000429345.5_1_6:6564539-6569721:-|nuORF	ENST00000429345.5_1_6:6564539-6569721:-|nuORF	ENST00000429345.5_1_6:6564539-6569721:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.7635803222656	2	466.287808	930.561064	-0.019039	-8.8775E-06	-4.2473	-0.0019805	-4.2663	-0.0019893	466.28560917013675	69.693	0.40871	69.693	69.506	69.915	0					20	9	3	0	0	0	0.023454	1	8395	8395		36.447	0	1	133350			75793	14142	52787	52877	83580	83580					0.09300582399987434
SRAIKPTL	8	Unmodified	_SRAIKPTL_					0	0	0		nc|ENSG00000285791|Q8IWW8-4|ADHFE1;nc|ENSG00000285791|Q8IWW8-3|ADHFE1;nc|ENSG00000285791|Q8IWW8-2|ADHFE1;ENSG00000147576|ENST00000396623|ADHFE1	nc|ENSG00000285791|Q8IWW8-4|ADHFE1	nc|ENSG00000285791|Q8IWW8-4|ADHFE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.7898254394531	2	443.279452	884.544351	0.14647	6.4929E-05	-0.27525	-0.00012201	-0.12878	-5.7084E-05	443.27911380764965	30.335	0.63607	30.186	29.835	30.471	-0.14952					36	14	5	0	0	0	0.027866	1	1930	1930		35.618	2.8059	1	437960			75794	5978	52788	52878	83581	83581					0.09746081514037996
SRAKAVRAL	9	Unmodified	_SRAKAVRAL_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.30889892578125	2	486.309075	970.603597	-0.53212	-0.00025877	0.038617	1.878E-05	-0.4935	-0.00023999	486.3090057572208	20.571	0.91579	20.467	20.227	21.143	-0.10477					43	18	4	0	0	0	0.45795	1	549	549		62.107	8.756	1	991990			75795	9888;5006	52789	52879	83582	83582					0.11711977528227635
SRAKAVRAL	9	Unmodified	_SRAKAVRAL_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.30902099609375	2	486.309075	970.603597	0.68115	0.00033125	-0.79474	-0.00038649	-0.11359	-5.5241E-05	486.30863086353884	20.437	1.0332	20.506	20.267	21.3	0.068901					48	20	4	0	0	0	0.62163	1	508	508		51.335	12.529	1	1020200			75796	9888;5006	52789	52879	83583	83583					0.11711977528227635
SRAKAVRAL	9	Unmodified	_SRAKAVRAL_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.30914306640625	2	486.309075	970.603597	0.04447	2.1626E-05	-0.40336	-0.00019616	-0.35889	-0.00017453	486.30881767345977	20.637	0.68108	20.469	20.246	20.927	-0.16774					39	13	4	0	0	0	0.53979	1	586	586		56.721	10.769	1	2101200			75797	9888;5006	52789	52879	83584	83584					0.11711977528227635
SRAKAVRAL	9	Unmodified	_SRAKAVRAL_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3090515136719	2	486.309075	970.603597	0.65888	0.00032042	-1.0118	-0.00049203	-0.3529	-0.00017162	486.30853464130655	20.705	0.78728	20.509	20.286	21.073	-0.19577					44	15	4	0	0	0	0.5973	2	585	562;585		52.937	12.159	1	1973800			75798	9888;5006	52789	52879	83585;83586	83586					0.11711977528227635
SRAKAVRAL	9	Unmodified	_SRAKAVRAL_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000136274|ENST00000490531|NACAD	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.307373046875	2	486.309075	970.603597	-0.34119	-0.00016592	-0.081058	-3.9419E-05	-0.42225	-0.00020534	486.3090092491961	20.812	0.69344	20.588	20.365	21.058	-0.22344					37	13	4	0	0	0	0.72875	1	550	550		44.117	10.601	1	1831400			75799	9888;5006	52789	52879	83587	83587					0.11711977528227635
SRAKGHRA	8	Unmodified	_SRAKGHRA_					0	0	0		nc|ENSG00000020181|Q96PE1-2|ADGRA2;ENSG00000020181|ENST00000412232|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.787841796875	2	441.754467	881.494381	0.25767	0.00011383	-2.4421	-0.0010788	-2.1844	-0.00096498	441.75305402353735	42.895	0.25322	42.755	42.631	42.885	-0.13929					8	6	2	0	0	0	0.027866	1	3941	3941		11.511	2.0405	1	64957			75800	954	52790	52880	83588	83588					0.048893916287511274
SRAKLPPSPG	10	Unmodified	_SRAKLPPSPG_					0	0	0		ENST00000315927.8_1_1:207223059-207224371:-|nuORF	ENST00000315927.8_1_1:207223059-207224371:-|nuORF	ENST00000315927.8_1_1:207223059-207224371:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.26446533203125	2	505.293091	1008.57163	-0.47007	-0.00023752	-0.68606	-0.00034666	-1.1561	-0.00058418	505.2925073457477	34.084	0.85138	34.084	33.777	34.629	0					60	21	4	0	0	0	0.03519	1	2552	2552		35.152	8.4591	1	1005800			75801	12142	52791	52881	83589	83589					0.0676856505442629
SRALAREVDL	10	Unmodified	_SRALAREVDL_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.80615234375	2	565.319837	1128.62512	-1.3876	-0.00078443	4.012	0.0022681	2.6244	0.0014836	565.3219962135439	55.919	0.38946	56.017	55.856	56.246	0.097893					17	10	2	0	0	0	0.03519	1	6162	6162		37.812	17.815	1	150850			75802	8170	52792	52882	83590	83590					0.06595317766277731
SRALEGKAKV	10	Unmodified	_SRALEGKAKV_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2977905273438	2	529.819473	1057.62439	0.087988	4.6618E-05	-0.35784	-0.00018959	-0.26985	-0.00014297	529.8191746518644	50.246	0.86205	50.327	50.022	50.885	0.08099					44	25	2	0	0	0	0.03519	1	5228	5228		17.468	0	1	3631600			75803	1633	52793	52883	83591	83591					0.09788523117231307
SRALKQRH	8	Unmodified	_SRALKQRH_					0	0	0			REV__nc|ENSG00000102362|Q96C24-2|SYTL4	REV__nc|ENSG00000102362|Q96C24-2|SYTL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2714538574219	2	498.296499	994.578445	-0.37484	-0.00018678	3.0613	0.0015254	2.6865	0.0013387	498.2978794687007	61.779	0.62707	61.846	61.43	62.057	0.067005					76	16	6	0	0	0	0.027866	1	7102	7102		25.45	0	1	3290800	+		75804	21304	52794	52884	83592	83592					0.08093922725652192
SRALKSLIP	9	Unmodified	_SRALKSLIP_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7846374511719	2	492.813659	983.612765	0.3379	0.00016652	-0.49603	-0.00024445	-0.15814	-7.7932E-05	492.81325895214565	57.128	0.61335	56.926	56.633	57.247	-0.20208					39	16	3	0	0	0	0.024367	1	6179	6179		36.447	9.7538	1	1342900			75805	8462	52795	52885	83593	83593					0.12030326093884014
SRALLVLPP	9	Unmodified	_SRALLVLPP_					0	0	0		nc|nan|Q6P387-2|C16orf46;ENSG00000166455|ENST00000299578|C16orf46	nc|nan|Q6P387-2|C16orf46	nc|nan|Q6P387-2|C16orf46	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7486267089844	2	483.310752	964.606951	-0.17414	-8.4166E-05	-0.8922	-0.00043121	-1.0663	-0.00051537	483.3101282137222	68.643	0.49329	68.643	68.444	68.938	0					19	12	2	0	0	0	0.024412	1	8221	8221		40.573	33.837	1	179770			75806	7567	52796	52886	83594	83594					0.12323227582214713
SRALNVVPE	9	Unmodified	_SRALNVVPE_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.6992492675781	2	492.777274	983.539994	-0.2455	-0.00012098	-2.4781	-0.0012212	-2.7236	-0.0013421	492.77580351663033	28.331	0.41288	28.411	28.329	28.742	0.080812					14	9	2	0	0	0	0.023837	1	1591	1591		45.972	0	1	669480	+		75807	29071	52797	52887	83595	83595					0.04756572300482276
SRALRQLK	8	Unmodified	_SRALRQLK_					0	0	0		ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	ENSG00000070601|ENST00000377765|FRMPD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.30902099609375	2	486.309075	970.603597	0.68115	0.00033125	-0.79474	-0.00038649	-0.11359	-5.5241E-05	486.30863086353884	20.437	1.0332	20.506	20.267	21.3	0.068901					48	20	4	0	0	0	0.87148	1	497	497		53.351	0.41475	1	1020200			75808	1429	52798	52888	83596	83596					0.11711977528216266
SRALVTCRIT	10	Unmodified	_SRALVTCRIT_					0	0	0			REV__ENST00000317560.13_1_12:42853085-42853175:+|nuORF	REV__ENST00000317560.13_1_12:42853085-42853175:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2985229492188	2	560.318783	1118.62301	-0.90113	-0.00050492	-2.6045	-0.0014593	-3.5056	-0.0019642	560.3166687856077	38.332	0.13521	38.153	38.102	38.237	-0.17929					5	3	2	0	0	0	0.03519	1	3162	3162		51.193	3.5354	1	92278	+		75809	30296	52799	52889	83597	83597					0.06844565756819065
SRAPAALPL	9	Unmodified	_SRAPAALPL_					0	0	0		ENST00000302190.8_1_8:97506012-97605724:+|nuORF	ENST00000302190.8_1_8:97506012-97605724:+|nuORF	ENST00000302190.8_1_8:97506012-97605724:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.7635192871094	2	448.271627	894.528701	-0.32416	-0.00014531	0.65732	0.00029466	0.33316	0.00014935	448.2718812493307	48.592	0.51818	48.592	48.277	48.795	0					16	14	2	0	0	0	0.024205	1	4913	4913		44.117	28.475	1	114620			75810	11949	52800	52890	83598	83598					0.07721794996984954
SRAPIRVWAR	10	Unmodified	_SRAPIRVWAR_					0	0	0			REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	REV__ENST00000251343.9_1_14:24909445-24909838:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5598449707031	3	404.575513	1210.70471	0.32892	0.00013307	-1.2532	-0.00050703	-0.92431	-0.00037395	404.5764227672817	33.425	0.39967	33.194	32.956	33.356	-0.23107					12	9	2	0	0	0	0.03519	1	2392	2392		13.508	5.1007	1	34503	+		75811	29503	52801	52891	83599	83599					0.10778429230913389
SRAQHLLLL	9	Unmodified	_SRAQHLLLL_					0	0	0			REV__ENST00000046640.7_1_17:3561399-3563180:+|nuORF	REV__ENST00000046640.7_1_17:3561399-3563180:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.280029296875	2	525.824558	1049.63456	-1.236	-0.00064991	0.19461	0.00010233	-1.0414	-0.00054758	525.8246403858451	44.022	0.32092	43.877	43.71	44.031	-0.14471					18	8	3	0	0	0	0.024418	1	4161	4161		45.972	3.5761	1	266480	+		75812	29264	52802	52892	83600	83600					0.11173130842462342
SRAQHLLLL	9	Unmodified	_SRAQHLLLL_					0	0	0			REV__ENST00000046640.7_1_17:3561399-3563180:+|nuORF	REV__ENST00000046640.7_1_17:3561399-3563180:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2799682617188	2	525.824558	1049.63456	-0.062298	-3.2758E-05	-0.74842	-0.00039354	-0.81071	-0.00042629	525.8241681377981	43.933	0.43632	43.97	43.706	44.142	0.0369					23	11	3	0	0	0	0.024292	1	4117	4117		40.778	5.1599	1	252870	+		75813	29264	52802	52892	83601	83601					0.11173130842462342
SRAQLEDL	8	Unmodified	_SRAQLEDL_					0	0	0		CON__ENSEMBL:ENSBTAP00000013050	CON__ENSEMBL:ENSBTAP00000013050	CON__ENSEMBL:ENSBTAP00000013050	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2637939453125	2	466.245806	930.47706	-0.17286	-8.0597E-05	-4.4078	-0.0020551	-4.5807	-0.0021357	466.24303842161095	37.798	0.59135	37.619	37.443	38.035	-0.17929					32	16	3	0	0	0	0.027866	1	3054	3054		29.15	4.9468	1	374230		+	75814	483	52803	52893	83602	83602					0.009040065124167995
SRAQLLVKL	9	Unmodified	_SRAQLLVKL_					0	0	0			REV__ENST00000491302.1_1_1:198685927-198687246:+|nuORF	REV__ENST00000491302.1_1_1:198685927-198687246:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.3340454101562	2	514.334759	1026.65496	-0.069578	-3.5786E-05	-0.2936	-0.00015101	-0.36317	-0.00018679	514.3344565730753	49.638	0.91785	49.638	49.324	50.242	0					60	25	4	0	0	0	0.22902	2	5139	5139;5152		85.161	7.8432	1	3245100	+		75815	33722	52804	52894	83603;83604	83603					0.14270301502278926
SRAREEYARQ	10	Unmodified	_SRAREEYARQ_					0	0	0		nc|ENSG00000170703|Q8N841-2|TTLL6;ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.2582092285156	3	422.549692	1264.62725	-0.19297	-8.1541E-05	2.9754	0.0012573	2.7825	0.0011757	422.55096555442833	27.893	0.89036	27.647	26.992	27.882	-0.24524					43	20	3	0	0	0	0.03519	1	1502	1502		36.318	4.6834	1	156840			75816	8070	52805	52895	83605	83605					0.0055174650408389425
SRARHQAVIL	10	Unmodified	_SRARHQAVIL_					0	0	0			REV__CHD1L|p.D807A|1|0.18|ENSG00000131778|chr1:147293636-147293636|A/C|missense_variant	REV__CHD1L|p.D807A|1|0.18|ENSG00000131778|chr1:147293636-147293636|A/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8429565429688	2	575.843813	1149.67307	-0.77612	-0.00044693	-0.64929	-0.00037389	-1.4254	-0.00082081	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0393	1	11229	11229		40.778	0	1	6382400	+		75817	19304	52806	52896	83606	83606					0.10422436476983421
SRARLGPG	8	Unmodified	_SRARLGPG_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.8788146972656	2	407.238119	812.461684	1.4457	0.00058874	-1.3384	-0.00054503	0.10734	4.3711E-05	407.23736248008174	20.408	0.58284	20.212	19.901	20.484	-0.19577					25	11	3	0	0	0	0.027866	1	508	508		8.8223	0	1	165000	+		75818	29123	52807	52897	83607	83607					0.04795184505906036
SRARPASH	8	Unmodified	_SRARPASH_					0	0	0		ENST00000470612.5_1_12:117513100-117537080:-|nuORF	ENST00000470612.5_1_12:117513100-117537080:-|nuORF	ENST00000470612.5_1_12:117513100-117537080:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7879638671875	2	441.23865	880.462747	-0.33881	-0.0001495	3.8415	0.001695	3.5027	0.0015455	441.24012538192125	42.633	0.22571	42.511	42.418	42.644	-0.12215					8	5	2	0	0	0	0.027866	1	3864	3864		16.473	0.83134	1	42190			75819	14934	52808	52898	83608	83608					0.01773398874797749
SRARPLAP	8	Unmodified	_SRARPLAP_					0	0	0		ENST00000280571.9_1_12:123920839-123921196:-|nuORF	ENST00000280571.9_1_12:123920839-123921196:-|nuORF	ENST00000280571.9_1_12:123920839-123921196:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.78009033203125	2	434.261594	866.508634	-0.94316	-0.00040958	1.3388	0.00058138	0.39561	0.0001718	434.2616064917923	37.75	0.48833	37.667	37.36	37.848	-0.082516					18	13	2	0	0	0	0.027866	1	3101	3101		10.866	0	1	103250			75820	11716	52809	52899	83609	83609					0.07004044057032388
SRARRRGGL	9	Unmodified	_SRARRRGGL_					0	0	0			REV__ENST00000573331.5_1_17:7297739-7306647:-|nuORF	REV__ENST00000573331.5_1_17:7297739-7306647:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2994384765625	2	514.812848	1027.61114	-0.45136	-0.00023236	-2.111	-0.0010868	-2.5623	-0.0013191	514.8117976307691	52.372	0.4352	52.372	52.16	52.595	0					16	9	2	0	0	0	0.024405	1	5642	5642		35.618	0	1	473100	+		75821	35431	52810	52900	83610	83610					0.09844129848534067
SRARRRGGL	9	Unmodified	_SRARRRGGL_					0	0	0			REV__ENST00000573331.5_1_17:7297739-7306647:-|nuORF	REV__ENST00000573331.5_1_17:7297739-7306647:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.812848	1027.61114	-0.79702	-0.00041032	-0.45452	-0.00023399	-1.2515	-0.00064431	514.8125931988018	52.237	0.42202	52.119	51.939	52.361	-0.11876	-0.15617	0.00034617	NaN	35.618	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179440	+		75822	35431	52810	52900							0.09844129848534067
SRARRRGGL	9	Unmodified	_SRARRRGGL_					0	0	0			REV__ENST00000573331.5_1_17:7297739-7306647:-|nuORF	REV__ENST00000573331.5_1_17:7297739-7306647:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.812848	1027.61114	-0.67739	-0.00034873	-0.56032	-0.00028846	-1.2377	-0.00063719	514.8122982123894	52.544	0.41708	52.275	52.054	52.471	-0.26903	0.00042435	0.00023724	NaN	35.618	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187440	+		75823	35431	52810	52900							0.09844129848534067
SRARVGDT	8	Unmodified	_SRARVGDT_					0	0	0		ENST00000497331.2_1_1:18688571-18704817:+|nuORF;ENSG00000117154|ENST00000251296|IGSF21	ENST00000497331.2_1_1:18688571-18704817:+|nuORF	ENST00000497331.2_1_1:18688571-18704817:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.53021240234375	2	431.230491	860.446428	2.2466	0.00096881	-1.9967	-0.00086105	0.2499	0.00010777	431.23265232325036	23.807	0.39351	23.616	23.4	23.794	-0.19117					19	8	3	0	0	0	0.027866	1	928	928		26.693	0	1	65223			75824	3613	52811	52901	83611	83611					0.010622729180454371
SRASTPAGPIP	11	Unmodified	_SRASTPAGPIP_					0	0	0		ENST00000457750.1_1_3:195341833-195346985:+|nuORF;nc|ENSG00000176945|Q8N307-3|MUC20;ENSG00000176945|ENST00000447234|MUC20	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.767333984375	2	527.288005	1052.56146	-1.0879	-0.00057362	0.074183	3.9116E-05	-1.0137	-0.0005345	527.2880285650997	22.993	0.44857	22.993	22.757	23.206	0					14	9	2	0	0	0	0.024736	1	853	853		36.447	18.122	1	25508			75825	8690	52812	52902	83612	83612					0.03727957329192577
SRATIARIL	9	Unmodified	_SRATIARIL_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7747497558594	2	500.816733	999.618913	0.4035	0.00020208	3.5224	0.0017641	3.9259	0.0019662	500.8183346695887	50.986	0.61016	50.805	50.572	51.182	-0.18071					20	15	2	0	0	0	0.024397	1	5183	5183		56.721	16.148	1	119450	+		75826	25697	52813	52903	83613	83613					0.11908844325409973
SRATIARIL	9	Unmodified	_SRATIARIL_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.816733	999.618913	0.71105	0.00035611	3.3128	0.0016591	4.0239	0.0020152	500.81788197087184	51.027	0.37738	50.915	50.712	51.09	-0.11163	0.0093608	-0.00049751	NaN	39.253	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149810	+		75827	25697	52813	52903							0.11908844325409973
SRATIARIL	9	Unmodified	_SRATIARIL_					0	0	0			REV__ENSG00000164114|ENST00000311277|MAP9	REV__ENSG00000164114|ENST00000311277|MAP9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	500.816733	999.618913	-0.080951	-4.0541E-05	4.358	0.0021825	4.277	0.002142	500.8186232385528	51.273	0.53267	50.997	50.702	51.235	-0.27643	0.091099	0.00054934	NaN	39.253	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102520	+		75828	25697	52813	52903							0.11908844325409973
SRATPGKAR	9	Unmodified	_SRATPGKAR_					0	0	0		ENST00000493772.5_1_20:62372609-62373703:+|nuORF	ENST00000493772.5_1_20:62372609-62373703:+|nuORF	ENST00000493772.5_1_20:62372609-62373703:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3290100097656	2	472.275232	942.535912	0.92326	0.00043603	-4.2634	-0.0020135	-3.3401	-0.0015775	472.27277184776267	18.608	0.88958	18.452	18.099	18.989	-0.15637					37	17	3	0	0	0	0.02435	1	338	338		19.997	0	1	157530			75829	15513	52814	52904	83614	83614					0.06234527597428041
SRAVAVAK	8	Unmodified	_SRAVAVAK_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.89947509765625	2	401.250695	800.486836	2.6833	0.0010767	2.5088	0.0010067	5.1921	0.0020833	401.25162148969457	54.719	0.21932	54.817	54.626	54.845	0.098015					6	5	2	0	0	0	0.027866	1	5922	5922		3.1592	0	1	37845			75830	8380	52815	52905	83615	83615					0.07861239308465429
SRAVLQEIN	9	Unmodified	_SRAVLQEIN_					0	0	0			REV__nc|ENSG00000083312|Q92973-3|TNPO1	REV__nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.3037719726562	2	515.288005	1028.56146	-0.77415	-0.00039891	-1.5258	-0.00078622	-2.2999	-0.0011851	515.2878958768215	29.046	1.0589	29.125	28.824	29.883	0.078344					38	26	3	0	0	0	0.024374	1	1763	1763		40.778	0	1	148980	+		75831	20712	52816	52906	83616	83616					0.04831957329201941
SRAWEEIHT	9	Unmodified	_SRAWEEIHT_					0	0	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.2371215820312	2	564.775262	1127.53597	-0.20187	-0.00011401	1.2889	0.00072796	1.0871	0.00061395	564.775498383658	46.077	0.48717	45.816	45.557	46.044	-0.26118					18	12	2	0	0	0	0.024495	1	4434	4434		26.693	0	1	114060	+		75832	30252	52817	52907	83617	83617					-0.022695171932582525
SRAWEEIHT	9	Unmodified	_SRAWEEIHT_					0	0	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2369384765625	2	564.775262	1127.53597	-0.90225	-0.00050957	2.7463	0.001551	1.844	0.0010414	565.2794350912609	45.965	0.47744	45.762	45.528	46.005	-0.20226					22	12	2	0	0	0	0.024457	1	4417	4417		37.159	11.709	1	131880	+		75833	30252	52817	52907	83618	83618					-0.022695171932582525
SRAWEEIHT	9	Unmodified	_SRAWEEIHT_					0	0	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	564.775262	1127.53597	-0.76073	-0.00042964	-0.71442	-0.00040349	-1.4752	-0.00083313	564.7748674786352	45.569	0.34596	45.613	45.546	45.892	0.043877	-0.1521	-0.0014408	NaN	29.15	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114050	+		75834	30252	52817	52907							-0.022695171932582525
SRAYTPED	8	Unmodified	_SRAYTPED_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.26068115234375	2	469.714339	937.414125	0.099446	4.6711E-05	-0.2758	-0.00012955	-0.17635	-8.2835E-05	469.7141387889443	33.144	0.56203	32.943	32.609	33.171	-0.20019					20	13	2	0	0	0	0.027866	1	2365	2365		24.203	0	1	127610	+		75835	26779	52818	52908	83619	83619					-0.057085592756266124
SRCAPRFISL	10	Unmodified	_SRCAPRFISL_					0	0	0		ENST00000425150.1_1_X:51099862-51139170:-|nuORF	ENST00000425150.1_1_X:51099862-51139170:-|nuORF	ENST00000425150.1_1_X:51099862-51139170:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3109741210938	2	575.3135	1148.61245	-1.6354	-0.00094086	-2.819	-0.0016218	-4.4544	-0.0025627	575.3116853963127	60.643	1.1222	60.722	60.28	61.402	0.078884					85	29	4	0	0	0	0.24462	1	6905	6905		115.49	8.811	1	3676300			75836	14061	52819	52909	83620	83620					0.04408583102394914
SRCGELLPL	9	Unmodified	_SRCGELLPL_					0	0	0		ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.7513427734375	2	494.268227	986.521901	-0.82201	-0.00040629	-3.0038	-0.0014847	-3.8258	-0.001891	494.2666311174424	46	0.61959	45.798	45.425	46.044	-0.20226					40	16	4	0	0	0	0.024209	1	4366	4366		56.721	0	1	750730			75837	1898	52820	52910	83621	83621					0.028101140541139102
SRCIIPPLV	9	Unmodified	_SRCIIPPLV_					0	0	0			REV__ENSG00000162994|ENST00000401408|CLHC1	REV__ENSG00000162994|ENST00000401408|CLHC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2883605957031	2	499.296788	996.579022	-1.3183	-0.00065823	-3.5762	-0.0017856	-4.8946	-0.0024438	499.2948393814902	49.212	0.48027	49.286	49.06	49.54	0.074196					21	12	2	0	0	0	0.023817	1	4979	4979		34.173	0	1	698960	+		75838	25517	52822	52911	83622	83622					0.08059581330485344
SRCKKWEV	8	Unmodified	_SRCKKWEV_					0	0	0			REV__ENST00000445273.6_1_13:31710821-31710914:-|nuORF	REV__ENST00000445273.6_1_13:31710821-31710914:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2875366210938	2	518.273844	1034.53313	-0.46093	-0.00023889	-0.037352	-1.9359E-05	-0.49828	-0.00025824	518.2740181204347	49.798	0.83329	49.798	49.508	50.341	0					29	23	2	0	0	0	0.027866	1	5127	5127		23.042	0	1	220590	+		75839	32606	52823	52912	83623	83623					0.017249361482527092
SRCKLLSWL	9	Unmodified	_SRCKLLSWL_					0	0	0		ENSG00000152669|ENST00000282572|CCNO	ENSG00000152669|ENST00000282572|CCNO	ENSG00000152669|ENST00000282572|CCNO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8303833007812	2	553.312969	1104.61138	0.067004	3.7074E-05	-3.7216	-0.0020592	-3.6546	-0.0020221	553.3105003454684	89.331	1.2159	89.194	88.862	90.078	-0.13762					54	28	3	0	0	0	0.02435	1	10974	10974		42.396	9.5837	1	594220			75840	6290	52824	52913	83624	83624					0.06326368733493837
SRCLHRPDAF	10	Unmodified	_SRCLHRPDAF_					0	0	0		ENST00000594671.5_1_19:4676093-4676540:-|nuORF	ENST00000594671.5_1_19:4676093-4676540:-|nuORF	ENST00000594671.5_1_19:4676093-4676540:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.2038269042969	3	401.201346	1200.58221	0.11983	4.8075E-05	2.3568	0.00094554	2.4766	0.00099361	401.2021224935404	25.625	0.3697	25.398	25.19	25.559	-0.22683					7	5	2	0	0	0	0.03519	1	1236	1236		56.632	14.294	1	183830			75841	17408	52826	52914	83625	83625					-0.010057755628167797
SRCMNKLT	8	Unmodified	_SRCMNKLT_					0	0	0			REV__ENSG00000258484|ENST00000310673|SPESP1	REV__ENSG00000258484|ENST00000310673|SPESP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.79266357421875	2	476.73878	951.463006	0.07488	3.5698E-05	3.1841	0.001518	3.259	0.0015537	476.74016584140963	56.927	0.80805	56.763	56.201	57.01	-0.16431					28	22	2	0	0	0	0.027866	1	6257	6257		45.972	14.442	1	283700	+		75842	29098	52827	52915	83626	83626					-0.01466685511866217
SRCPRRPI	8	Unmodified	_SRCPRRPI_					0	0	0		ENSG00000203786|ENST00000606109|KPRP	ENSG00000203786|ENST00000606109|KPRP	ENSG00000203786|ENST00000606109|KPRP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7769470214844	2	492.779628	983.544702	-0.85556	-0.0004216	-3.9919	-0.0019671	-4.8475	-0.0023887	492.7775408736764	46.547	0.99136	46.394	46.061	47.052	-0.15301					76	26	4	0	0	0	0.59392	1	4587	4587		76.847	3.9674	1	6364200			75843	10281	52828	52916	83627	83627					0.05227177962240148
SRCPRVLI	8	Unmodified	_SRCPRVLI_					0	0	0		ENST00000361361.6_1_1:155224654-155224945:-|nuORF	ENST00000361361.6_1_1:155224654-155224945:-|nuORF	ENST00000361361.6_1_1:155224654-155224945:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.2948303222656	2	472.278929	942.543305	0.87092	0.00041132	0.6032	0.00028488	1.4741	0.0006962	472.28137027914295	55.052	0.91735	55.052	54.656	55.573	0					65	25	5	0	0	0	0.027866	1	6082	6082		55.504	0	1	859000			75844	12796	52829	52917	83628	83628					0.06973543873482413
SRCPSAQVL	9	Unmodified	_SRCPSAQVL_					0	0	0			REV__ENST00000584041.1_1_17:62152499-62207458:-|nuORF	REV__ENST00000584041.1_1_17:62152499-62207458:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7503662109375	2	480.750201	959.48585	-0.27171	-0.00013063	-0.4078	-0.00019605	-0.67951	-0.00032668	480.74997025581683	30.718	0.716	30.727	30.538	31.254	0.0086708					47	16	3	0	0	0	0.2508	1	2008	2008		82.241	5.3939	1	7793500	+		75845	27194	52830	52918	83629	83629					0.004486568772449573
SRCRVPRDD	9	Unmodified	_SRCRVPRDD_					0	0	0		ENST00000558489.1_1_14:54422455-54423330:-|nuORF	ENST00000558489.1_1_14:54422455-54423330:-|nuORF	ENST00000558489.1_1_14:54422455-54423330:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.3154296875	2	552.272364	1102.53017	-0.57295	-0.00031642	3.518	0.0019429	2.945	0.0016265	552.273702367063	72.448	0.9692	72.25	71.909	72.878	-0.19811					32	22	2	0	0	0	0.024541	1	8503	8503		37.812	16.126	1	256630			75846	16750	52831	52919	83630	83630					-0.016989389765512897
SRCVLLNY	8	Unmodified	_SRCVLLNY_					0	0	0		nc|ENSG00000130948|P37058-2|HSD17B3;ENSG00000130948|ENST00000375263|HSD17B3	nc|ENSG00000130948|P37058-2|HSD17B3	nc|ENSG00000130948|P37058-2|HSD17B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7900695800781	2	484.25512	966.495686	-0.62705	-0.00030365	0.76069	0.00036837	0.13363	6.4713E-05	484.25523263166303	32.649	1.7477	32.649	32.03	33.777	0					85	46	4	0	0	0	0.027866	1	2364	2364		27.882	0	1	348280			75847	4476	52832	52920	83631	83631					0.011098448826373897
SRDFQPPLIM	10	Unmodified	_SRDFQPPLIM_					0	0	0			REV__nc|ENSG00000078098|Q12884-2|FAP	REV__nc|ENSG00000078098|Q12884-2|FAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5362854003906	3	401.877869	1202.61178	0.67088	0.00026961	1.0522	0.00042287	1.7231	0.00069248	402.2120267505066	35.115	1.6464	34.902	34.038	35.684	-0.21246					52	41	2	0	0	0	0.03519	1	2658	2658		25.126	0	1	277280	+		75848	20604	52833	52921	83632	83632					0.018577436626628696
SRDGMMSFS	9	Unmodified	_SRDGMMSFS_					0	0	0			REV__ENSG00000159658|ENST00000371933|EFCAB14	REV__ENSG00000159658|ENST00000371933|EFCAB14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7543029785156	2	509.210052	1016.40555	-1.411	-0.00071849	3.2909	0.0016758	1.88	0.00095729	509.2115830684277	29.268	0.58891	29.268	28.82	29.408	0					27	14	2	0	0	0	0.024506	1	1795	1795		23.042	3.6825	1	250440	+		75849	25268	52834	52922	83633	83633					-0.10199572508088295
SRDLLICY	8	Unmodified	_SRDLLICY_					0	0	0			REV__ENST00000429416.7_3_19:11172600-11172933:+|nuORF	REV__ENST00000429416.7_3_19:11172600-11172933:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.7964172363281	2	491.754953	981.495352	-0.07357	-3.6179E-05	-0.42924	-0.00021108	-0.50282	-0.00024726	491.75468448281106	47.159	0.52024	46.965	46.712	47.232	-0.19387					25	13	3	0	0	0	0.027866	1	4601	4601		25.45	0	1	175100	+		75850	32335	52835	52923	83634	83634					0.0038642516276468086
SRDLLNQLREG	11	Unmodified	_SRDLLNQLREG_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.23675537109375	3	434.237114	1299.68951	-0.028613	-1.2425E-05	0.023396	1.0159E-05	-0.0052167	-2.2653E-06	434.2374714653068	72.548	1.8035	72.35	71.544	73.348	-0.19811					74	43	3	0	0	0	1.0059	1	8506	8506		35.496	5.3565	1	630000			75851	5716	52836	52924	83635	83635					0.05165472852422681
SRDPAYEL	8	Unmodified	_SRDPAYEL_					0	0	0		nc|ENSG00000140391|O60637-3|TSPAN3;ENSG00000140391|ENST00000267970|TSPAN3;nc|ENSG00000140391|O60637-2|TSPAN3	nc|ENSG00000140391|O60637-3|TSPAN3	nc|ENSG00000140391|O60637-3|TSPAN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7922668457031	2	475.732532	949.45051	0.75576	0.00035954	-3.6185	-0.0017215	-2.8628	-0.0013619	475.73123049032387	49.855	0.42806	49.855	49.656	50.084	0					17	11	2	0	0	0	0.027866	1	5193	5193		51.335	16.135	1	155570			75852	5406	52837	52925	83636	83636					-0.026236823789190566
SRDRFRSHRS	10	Unmodified	_SRDRFRSHRS_					0	0	0			REV__ZFP36L1|p.D83H|1|0.32|ENSG00000185650|chr14:68790303-68790303|C/G|missense_variant	REV__ZFP36L1|p.D83H|1|0.32|ENSG00000185650|chr14:68790303-68790303|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.5471496582031	3	435.229064	1302.66536	-0.60941	-0.00026523	3.0178	0.0013134	2.4083	0.0010482	435.2313379140387	29.641	0.21043	29.469	29.365	29.575	-0.17258					6	4	2	0	0	0	0.03519	1	1818	1818		20.315	12.08	1	20459	+		75853	37797	52838	52926	83637	83637					0.026136772094105254
SRDRSIPH	8	Unmodified	_SRDRSIPH_					0	0	0		ENST00000338488.8_1_9:102584509-102584662:+|nuORF	ENST00000338488.8_1_9:102584509-102584662:+|nuORF	ENST00000338488.8_1_9:102584509-102584662:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2483825683594	2	484.25704	966.499526	-0.89077	-0.00043136	2.2855	0.0011068	1.3947	0.00067542	484.2582741034061	25.934	0.2777	25.771	25.588	25.865	-0.16331					11	6	3	0	0	0	0.027866	1	1260	1260		42.474	1.9018	1	91560			75854	12441	52839	52927	83638	83638					0.014936507007064392
SRDSESGSSKT	11	Unmodified	_SRDSESGSSKT_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7781982421875	2	570.760006	1139.50546	0.47781	0.00027272	-2.5519	-0.0014565	-2.0741	-0.0011838	570.7587093193216	32.303	0.43595	32.11	31.899	32.335	-0.19261					19	9	3	0	0	0	0.024785	1	2239	2239		16.717	2.5803	1	107190	+		75855	23500	52840	52928	83639	83639					-0.05871340368935307
SRDTFIIT	8	Unmodified	_SRDTFIIT_					0	0	0			REV__ENSG00000179152|ENST00000342649|TCAIM	REV__ENSG00000179152|ENST00000342649|TCAIM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.79266357421875	2	476.758549	951.502546	0.098071	4.6756E-05	0.3029	0.00014441	0.40097	0.00019116	476.75858900536383	56.108	0.65362	55.952	55.742	56.395	-0.15601					29	17	2	0	0	0	0.027866	1	6257	6257		49.442	10.635	1	242930	+		75856	27243	52841	52929	83640	83640					0.024854810348415413
SRDVKLTVK	9	Unmodified	_SRDVKLTVK_					0	0	0		ENST00000488608.5_1_X:64139959-64196305:-|nuORF;ENST00000492653.5_1_X:64139109-64196305:-|nuORF	ENST00000488608.5_1_X:64139959-64196305:-|nuORF	ENST00000488608.5_1_X:64139959-64196305:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2561645507812	2	523.321848	1044.62914	-1.0067	-0.00052682	-0.18002	-9.4209E-05	-1.1867	-0.00062103	523.3213485093444	23.808	0.51714	23.747	23.557	24.075	-0.060862					17	11	2	0	0	0	0.024506	1	952	952		23.042	1.0826	1	42530			75857	15392	52842	52930	83641	83641					0.10861407259994849
SRDVKLTVK	9	Unmodified	_SRDVKLTVK_					0	0	0		ENST00000488608.5_1_X:64139959-64196305:-|nuORF;ENST00000492653.5_1_X:64139109-64196305:-|nuORF	ENST00000488608.5_1_X:64139959-64196305:-|nuORF	ENST00000488608.5_1_X:64139959-64196305:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2579345703125	2	523.321848	1044.62914	-0.20467	-0.00010711	-1.5221	-0.00079656	-1.7268	-0.00090367	523.3208081790693	23.723	0.53204	23.8	23.604	24.136	0.076241					19	11	2	0	0	0	0.024506	1	916	916		23.042	3.6825	1	52705			75858	15392	52842	52930	83642	83642					0.10861407259994849
SRDVSSQEY	9	Unmodified	_SRDVSSQEY_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.258544921875	2	535.741085	1069.46762	-1.096	-0.00058718	-2.9901	-0.0016019	-4.0861	-0.0021891	536.2398690309246	53.218	0.21371	53.314	53.23	53.444	0.095669					6	5	2	0	0	0	0.024323	1	5687	5687		44.117	0	1	83189	+		75859	20842	52843	52931	83643	83643					-0.06433806563745748
SREAKKLIP	9	Unmodified	_SREAKKLIP_					0	0	0			REV__ENST00000369982.4_1_X:153238261-153247514:+|nuORF	REV__ENST00000369982.4_1_X:153238261-153247514:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8163452148438	2	521.324391	1040.63423	-1.0707	-0.00055818	1.1731	0.00061159	0.10245	5.3412E-05	521.3249451345197	64.712	0.53027	64.45	64.155	64.686	-0.2626					20	13	2	0	0	0	0.024	1	7631	7631		55.504	0	1	563000	+		75860	31106	52844	52932	83644	83644					0.11553711122610366
SREEALQDPR	10	Unmodified	_SREEALQDPR_					0	0	0		ENST00000543661.1_1_11:67231974-67232409:-|nuORF;ENST00000535813.5_1_11:67231974-67234980:-|nuORF;ENST00000545682.5_1_11:67231974-67232639:-|nuORF;ENST00000308022.6_2_11:67231974-67234980:-|nuORF	ENST00000543661.1_1_11:67231974-67232409:-|nuORF	ENST00000543661.1_1_11:67231974-67232409:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.24737548828125	3	400.870431	1199.58946	0.69857	0.00028004	-4.4488	-0.0017834	-3.7503	-0.0015034	400.86832189237197	32.692	0.8742	32.692	32.3	33.174	0					44	22	3	0	0	0	0.03519	1	2342	2342		52.167	16.672	1	272620			75861	16469	52845	52933	83645	83645					-0.0023476448141082074
SREELLGQL	9	Unmodified	_SREELLGQL_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;CAMTA2|p.Q527Sfs*66|1|0.3|ENSG00000108509|chr17:4979743-4979743|G/-|frameshift_variant	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3265991210938	2	522.787838	1043.56112	0.029788	1.5573E-05	-0.37833	-0.00019779	-0.34855	-0.00018222	522.7876010403199	55.379	0.95351	55.379	54.656	55.61	0					43	26	2	0	0	0	0.024495	1	6112	6112		26.693	0	1	824150			75862	2904	52846	52934	83646	83646					0.04108537609340601
SREEPVLQ	8	Unmodified	_SREEPVLQ_					0	0	0			REV__ENST00000512784.5_1_14:76777062-76777200:+|nuORF	REV__ENST00000512784.5_1_14:76777062-76777200:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2905578613281	2	479.253631	956.49271	0.62074	0.00029749	-0.81256	-0.00038942	-0.19182	-9.1929E-05	479.2531548141727	46.84	1.6217	46.84	46.126	47.748	0					97	45	5	0	0	0	0.027866	1	4697	4697		53.351	0	1	4280100	+		75863	34141	52847	52935	83647	83647					0.012722930294785328
SREIIIHKS	9	Unmodified	_SREIIIHKS_					0	0	0			REV__nc|ENSG00000067191|Q02641-3|CACNB1	REV__nc|ENSG00000067191|Q02641-3|CACNB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.79296875	2	541.819473	1081.62439	-1.0244	-0.00055504	0.2477	0.00013421	-0.77669	-0.00042083	541.819529783787	44.453	0.71102	44.49	44.176	44.887	0.0369					45	20	3	0	0	0	0.024466	1	4188	4188		12.812	0	1	714930	+		75864	20354	52848	52936	83648	83648					0.08684523117221943
SREKIKSD	8	Unmodified	_SREKIKSD_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57094898-57095944:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57094898-57095944:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2968444824219	2	481.766906	961.519259	0.45523	0.00021931	4.2843	0.0020641	4.7396	0.0022834	481.7684884898526	45.978	0.58574	45.881	45.529	46.115	-0.096649					21	15	2	0	0	0	0.027866	1	4433	4433		25.574	0	1	230230			75865	6066;11810	52849	52937	83649	83649					0.036959819208163935
SREKSNAWTAR	11	Unmodified	_SREKSNAWTAR_					0	0	0			REV__nc|ENSG00000105732|Q6ZN55-2|ZNF574	REV__nc|ENSG00000105732|Q6ZN55-2|ZNF574	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.2478942871094	3	435.893459	1304.65855	-0.31034	-0.00013527	0.9961	0.0004342	0.68577	0.00029892	435.8934295613271	34.393	0.40199	34.218	34.011	34.413	-0.17557					13	9	2	0	0	0	0.024757	1	2496	2496		20.315	0	1	72662	+		75866	36544	52850	52938	83650	83650					0.01840319538177937
SRELALVI	8	Unmodified	_SRELALVI_					0	0	0		nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.25360107421875	2	450.779285	899.544017	0.092314	4.1613E-05	4.4297	0.0019968	4.522	0.0020384	450.78109719772004	66.14	0.65307	65.867	65.568	66.221	-0.27282					29	16	2	0	0	0	0.027866	1	7862	7862		39.021	0	1	183940			75867	1418	52851	52939	83651	83651					0.09022661794188025
SRELTNVF	8	Unmodified	_SRELTNVF_					0	0	0			REV__ENSG00000136271|ENST00000258772|DDX56	REV__ENSG00000136271|ENST00000258772|DDX56	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.6463317871094	2	483.256174	964.497795	0.12138	5.8657E-05	-1.4479	-0.00069969	-1.3265	-0.00064103	483.2545958833833	47.492	0.44994	47.222	46.977	47.427	-0.26939					23	11	3	0	0	0	0.027866	1	4627	4627		16.473	0	1	253570	+		75868	23643	52852	52940	83652	83652					0.01412596892100737
SRELVSLTSRN	11	Unmodified	_SRELVSLTSRN_					0	0	0		ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	ENSG00000178974|ENST00000313833|FBXO34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.7037658691406	3	421.233481	1260.67861	-0.76565	-0.00032252	3.2789	0.0013812	2.5132	0.0010587	421.2347086756473	33.502	0.59455	33.336	33.117	33.711	-0.16565					29	14	3	0	0	0	0.024738	1	2409	2409		25.068	11.56	1	260070			75869	8853	52853	52941	83653	83653					0.05870070478135858
SREPDRHRAL	10	Unmodified	_SREPDRHRAL_					0	0	0			REV__ENST00000565624.1_1_16:88495448-88495487:+|nuORF	REV__ENST00000565624.1_1_16:88495448-88495487:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.25579833984375	3	412.890048	1235.64832	0.20245	8.359E-05	1.6294	0.00067276	1.8318	0.00075635	412.8905906141695	20.71	0.97423	20.542	20.197	21.171	-0.16774					56	19	4	0	0	0	0.03519	1	618	618		26.063	0	1	312100	+		75870	35279	52854	52942	83654	83654					0.03991756603613794
SREPERSG	8	Unmodified	_SREPERSG_					0	0	0		ENST00000369390.3_1:120839153-120839405:+|nuORF;ENST00000367128.7_1_1:206138625-206138877:+|nuORF	ENST00000369390.3_1:120839153-120839405:+|nuORF	ENST00000369390.3_1:120839153-120839405:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2250671386719	2	459.225405	916.436257	-0.34297	-0.0001575	0.54003	0.00024799	0.19705	9.0492E-05	459.2255826361952	23.567	2.5433	23.387	21.237	23.78	-0.17989					106	55	4	0	0	0	0.89627	1	979	979		51.335	8.9393	1	1335300			75871	12841	52855	52943	83655	83655					-0.02530334807181589
SREPQDRPE	9	Unmodified	_SREPQDRPE_					0	0	0		ENST00000584602.1_1_17:27946777-27949916:-|nuORF;ENST00000459686.5_1_17:27945497-27949916:-|nuORF	ENST00000584602.1_1_17:27946777-27949916:-|nuORF	ENST00000584602.1_1_17:27946777-27949916:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.7315063476562	2	557.267801	1112.52105	-0.49057	-0.00027338	4.145	0.0023099	3.6545	0.0020365	557.2700097282342	32.266	0.58273	32.109	31.861	32.444	-0.15772					27	13	3	0	0	0	0.024447	1	2201	2201		19.104	0	1	270320			75872	14630	52856	52944	83656	83656					-0.030710090612274143
SREPRVNLTF	10	Unmodified	_SREPRVNLTF_					0	0	0		ENST00000532962.5_1_11:43918877-43941557:+|nuORF;ENSG00000166199|ENST00000302708|ALKBH3	ENST00000532962.5_1_11:43918877-43941557:+|nuORF	ENST00000532962.5_1_11:43918877-43941557:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.2445068359375	3	406.891166	1217.65167	-0.53886	-0.00021926	1.1066	0.00045026	0.56773	0.00023101	406.8912862237825	35.544	0.42078	35.357	35.1	35.521	-0.18675					15	10	2	0	0	0	0.03519	1	2689	2689		21.686	0.8486	1	307240			75873	7522	52857	52945	83657	83657					0.05155006657605554
SREQRPDGW	9	Unmodified	_SREQRPDGW_					0	0	0			REV__ENST00000238667.8_1_14:76044981-76045170:+|nuORF	REV__ENST00000238667.8_1_14:76044981-76045170:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.8056030273438	2	565.770511	1129.52647	0.32129	0.00018178	-2.9981	-0.0016963	-2.6768	-0.0015145	565.7681731203182	56.766	0.53652	56.564	56.211	56.747	-0.20209					16	13	2	0	0	0	0.024447	1	6131	6131		25.574	0	1	89033	+		75874	29441	52858	52946	83658	83658					-0.03311285478753234
SRERQWIY	8	Unmodified	_SRERQWIY_					0	0	0			REV__nc|ENSG00000163806|Q5MJ70-1|SPDYA	REV__nc|ENSG00000163806|Q5MJ70-1|SPDYA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2664184570312	2	569.293622	1136.57269	-0.49414	-0.00028131	-3.5641	-0.002029	-4.0583	-0.0023103	569.2913592747957	22.439	0.46098	22.253	22	22.46	-0.18539					20	9	3	0	0	0	0.027866	1	809	809		19.36	0	1	190670	+		75875	25635	52859	52947	83659	83659					0.00986779423351436
SRERRSLIDD	10	Unmodified	_SRERRSLIDD_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2459716796875	3	416.221464	1245.64256	-0.16445	-6.8448E-05	-1.9114	-0.00079555	-2.0758	-0.000864	416.22049730901506	28.119	1.0083	27.967	27.689	28.698	-0.15195					34	24	2	0	0	0	0.03519	1	1685	1685		12.957	0	1	133160	+		75876	22022	52860	52948	83660	83660					0.029566133012849605
SRESNRQLH	9	Unmodified	_SRESNRQLH_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2772827148438	2	563.789235	1125.56392	-0.63998	-0.00036081	-3.119	-0.0017585	-3.759	-0.0021193	563.7872586178813	90.519	0.66499	90.393	90.088	90.753	-0.12512					35	15	4	0	0	0	0.024313	1	11123	11123		21.686	0	1	651050	+		75877	23585	52861	52949	83661	83661					0.006158057868560718
SRETPAAR	8	Unmodified	_SRETPAAR_					0	0	0		ENSG00000111203|ENST00000228799|ITFG2	ENSG00000111203|ENST00000228799|ITFG2	ENSG00000111203|ENST00000228799|ITFG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2875671386719	2	444.238316	886.462078	-0.64607	-0.00028701	3.3517	0.0014889	2.7056	0.0012019	444.2399962297414	35.715	0.27528	35.506	35.302	35.577	-0.20937					10	6	2	0	0	0	0.027866	1	2700	2700		16.473	0	1	85760			75878	3092	52862	52950	83662	83662					0.014305594350958017
SRETRGEN	8	Unmodified	_SRETRGEN_					0	0	0		nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	nc|ENSG00000215866|Q8N9X3|LINC01356	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2648010253906	2	474.728312	947.442071	-0.20218	-9.598E-05	-3.0576	-0.0014515	-3.2598	-0.0015475	474.7264472659927	44.149	0.57911	44.149	43.872	44.451	0					30	16	3	0	0	0	0.027866	1	4220	4220		44.117	10.601	1	399100			75879	18726	52863	52951	83663	83663					-0.0337523629551697
SRETSLIVT	9	Unmodified	_SRETSLIVT_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2961120605469	2	503.282389	1004.55022	1.7679	0.00088974	3.8337	0.0019294	5.6016	0.0028192	503.2841048212337	63.755	0.71457	63.803	63.441	64.156	0.048336					34	19	2	0	0	0	0.023454	1	7365	7365		62.107	0	1	438740			75880	5591	52864	52952	83664	83664					0.04813135235053778
SREVERKRIA	10	Unmodified	_SREVERKRIA_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.9034423828125	3	415.245832	1242.71567	-0.097455	-4.0468E-05	3.8462	0.0015971	3.7488	0.0015567	415.2475286712756	45.256	0.72158	45.3	44.858	45.58	0.04388					24	20	2	0	0	0	0.03519	1	4273	4273		10.104	0	1	81788	+		75881	33403	52865	52953	83665	83665					0.10401786814577463
SREVERKRIA	10	Unmodified	_SREVERKRIA_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	415.245832	1242.71567	-0.15301	-6.3536E-05	2.8358	0.0011775	2.6827	0.001114	415.246863555605	45.438	0.37228	45.289	44.974	45.346	-0.1488	-0.0054865	-0.00038129	NaN	10.104	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72222	+		75882	33403	52865	52953							0.10401786814577463
SREWFSYFLD	10	Unmodified	_SREWFSYFLD_					0	0	0			REV__nc|ENSG00000103222|P33527-6|ABCC1	REV__nc|ENSG00000103222|P33527-6|ABCC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7792053222656	3	450.543544	1348.6088	-0.77032	-0.00034706	3.1201	0.0014057	2.3498	0.0010587	450.54487814077373	53.962	0.45551	53.826	53.598	54.053	-0.13616					38	14	3	0	0	0	0.03519	1	5742	5742		10.587	0	1	522800	+		75883	21366	52866	52954	83666	83666					-0.05155808190465905
SREWHVFCKDW	11	Unmodified	_SREWHVFCKDW_					0	0	0			REV__ENST00000331366.9_2_12:39223181-39233719:-|nuORF	REV__ENST00000331366.9_2_12:39223181-39233719:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7352294921875	3	498.231194	1491.67175	-0.54756	-0.00027281	1.9654	0.00097921	1.4178	0.0007064	498.2319217609385	31.231	0.48881	31.079	30.928	31.417	-0.15231					13	12	2	0	0	0	0.024801	1	2021	2021		5.4129	0	1	47591	+		75884	30474	52867	52955	83667	83667					-0.054415656740957274
SRFAGYLPRYW	11	Unmodified	_SRFAGYLPRYW_					0	0	0			REV__ENSG00000085365|ENST00000621999|SCAMP1	REV__ENSG00000085365|ENST00000621999|SCAMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7741394042969	3	472.578811	1414.7146	-0.74277	-0.00035102	-2.4437	-0.0011549	-3.1865	-0.0015059	472.57805605426364	37.236	0.38557	37.016	36.767	37.152	-0.2195					14	9	2	0	0	0	0.024828	1	2963	2963		9.2118	0	1	107590	+		75885	20746	52868	52956	83668	83668					0.023835724456603202
SRFAGYLPRYW	11	Unmodified	_SRFAGYLPRYW_					0	0	0			REV__ENSG00000085365|ENST00000621999|SCAMP1	REV__ENSG00000085365|ENST00000621999|SCAMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7745666503906	3	472.578811	1414.7146	0.005303	2.5061E-06	-2.2498	-0.0010632	-2.2445	-0.0010607	472.91219144607186	37.149	0.38659	36.94	36.806	37.192	-0.2092					16	9	2	0	0	0	0.024809	1	2933	2933		17.167	0	1	94778	+		75886	20746	52868	52956	83669	83669					0.023835724456603202
SRFARNKVS	9	Unmodified	_SRFARNKVS_					0	0	0		ENSG00000158220|ENST00000389567|ESYT3;ENST00000486831.5_1_3:138153640-138188991:+|nuORF	ENSG00000158220|ENST00000389567|ESYT3	ENSG00000158220|ENST00000389567|ESYT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.24853515625	2	532.801614	1063.58868	-0.29528	-0.00015733	1.7331	0.0009234	1.4378	0.00076608	532.802436575964	48.417	0.53815	48.23	47.978	48.516	-0.18684					38	14	4	0	0	0	0.024541	1	4840	4840		13.454	0	1	836970			75887	6654	52869	52957	83670	83670					0.05942485660239072
SRFCQLRLGRA	11	Unmodified	_SRFCQLRLGRA_					0	0	0			REV__nc|ENSG00000075651|Q13393-4|PLD1	REV__nc|ENSG00000075651|Q13393-4|PLD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.7926940917969	3	436.243546	1305.70881	-0.28529	-0.00012445	-0.13322	-5.8117E-05	-0.41851	-0.00018257	436.24366031187975	33.144	0.39661	32.979	32.76	33.156	-0.16565					12	9	2	0	0	0	0.02475	1	2328	2328		24.276	0	1	121680	+		75888	36471	52870	52958	83671	83671					0.06818150662343214
SRFCYLTD	8	Unmodified	_SRFCYLTD_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.3177795410156	2	502.728935	1003.44332	0.52041	0.00026163	-3.6508	-0.0018354	-3.1304	-0.0015737	502.7268667045689	52.96	0.47945	52.702	52.482	52.961	-0.25838					18	11	2	0	0	0	0.027866	1	5488	5488		31.955	0	1	189710			75889	1565	52871	52959	83672	83672					-0.058267382509939125
SRFKPTSLSY	10	Unmodified	_SRFKPTSLSY_					0	0	0		ENST00000337198.9_1_8:103840551-103840623:-|nuORF	ENST00000337198.9_1_8:103840551-103840623:-|nuORF	ENST00000337198.9_1_8:103840551-103840623:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.8018188476562	2	593.316763	1184.61897	0.026869	1.5942E-05	1.8068	0.001072	1.8336	0.0010879	593.8198528768825	35.932	0.55691	35.734	35.575	36.132	-0.19829					23	15	2	0	0	0	0.03519	1	2776	2776		41.427	0	1	205710			75890	12414	52872	52960	83673	83673					0.03404799534769154
SRFKSSLFKL	10	Unmodified	_SRFKSSLFKL_					0	0	0			REV__AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant	REV__AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.9066162109375	3	404.908157	1211.70264	0.23488	9.5104E-05	-3.7987	-0.0015381	-3.5639	-0.001443	404.9066402890256	22.752	0.88935	22.676	22.363	23.253	-0.075296					57	19	4	0	0	0	0.75813	1	819	819		63.426	1.7352	1	1793400	+		75891	19133	52873	52961	83674	83674					0.10525955702496503
SRFLFERVC	9	Unmodified	_SRFLFERVC_					0	0	0			REV__ENST00000556029.5_2_12:98909466-98909595:+|nuORF	REV__ENST00000556029.5_2_12:98909466-98909595:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.82080078125	2	578.800226	1155.5859	0.81923	0.00047417	3.5418	0.00205	4.3611	0.0025242	578.8018008237658	23.011	0.37043	22.82	22.664	23.034	-0.19117					9	7	2	0	0	0	0.024427	1	849	849		19.997	0	1	22801	+		75892	34851	52874	52962	83675	83675					0.014328942110751086
SRFLHRIE	8	Unmodified	_SRFLHRIE_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2984008789062	2	529.298707	1056.58286	-0.72694	-0.00038477	-1.0189	-0.00053929	-1.7458	-0.00092407	529.2978580924387	30.732	1.0476	30.742	30.415	31.463	0.0098057					35	24	2	0	0	0	0.6248	1	1978	1978		73.975	5.1879	1	2534700	+		75893	28151	52875	52963	83676	83676					0.056833871485423515
SRFLHRIE	8	Unmodified	_SRFLHRIE_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MSMS	OPSCC_39_ClassI_Rep-3	3	529.2982177734375	2	529.298707	1056.58286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.38	1	30.455	29.955	30.955	0.074314								0	0	0	0.44619	1	1895	1895		60.972	0.67798	1		+		75894	28151	52875	52963	83677	83677					0.056833871485423515
SRFPCLPLS	9	Unmodified	_SRFPCLPLS_					0	0	0		ENST00000594950.5_1_19:58865471-58865783:+|nuORF	ENST00000594950.5_1_19:58865471-58865783:+|nuORF	ENST00000594950.5_1_19:58865471-58865783:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.29681396484375	2	510.27077	1018.52699	-0.76882	-0.00039231	-0.39647	-0.0002023	-1.1653	-0.00059461	510.27070502019154	63.02	0.53275	62.781	62.492	63.025	-0.23926					24	12	3	0	0	0	0.024405	1	7335	7335		27.882	0	1	218480			75895	17414	52876	52964	83678	83678					0.01846417916738119
SRFPCLPLS	9	Unmodified	_SRFPCLPLS_					0	0	0		ENST00000594950.5_1_19:58865471-58865783:+|nuORF	ENST00000594950.5_1_19:58865471-58865783:+|nuORF	ENST00000594950.5_1_19:58865471-58865783:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2964172363281	2	510.27077	1018.52699	0.070817	3.6136E-05	-0.78761	-0.0004019	-0.71679	-0.00036576	510.27027002273326	62.783	0.65245	62.837	62.474	63.126	0.054104					27	15	2	0	0	0	0.024477	1	7245	7245		20.947	0	1	205220			75896	17414	52876	52964	83679	83679					0.01846417916738119
SRFPLGFHL	9	Unmodified	_SRFPLGFHL_					0	0	0		ENST00000527092.5_1_11:66242516-66247588:-|nuORF	ENST00000527092.5_1_11:66242516-66247588:-|nuORF	ENST00000527092.5_1_11:66242516-66247588:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.8114013671875	2	537.298176	1072.5818	1.1342	0.00060939	-2.2458	-0.0012067	-1.1116	-0.00059726	537.2968915369995	18.944	0.49419	18.944	18.724	19.218	0					17	9	3	0	0	0	0.024487	1	378	378		24.203	0	1	108280			75897	16139	52877	52965	83680	83680					0.04841172779674707
SRFQISIS	8	Unmodified	_SRFQISIS_					0	0	0		chr11:65172001-65172246|145|15.74|0.43|5.19|+|1|SPDYC,SPDYC|1	chr11:65172001-65172246|145|15.74|0.43|5.19|+|1|SPDYC,SPDYC|1	chr11:65172001-65172246|145|15.74|0.43|5.19|+|1|SPDYC,SPDYC|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.2989501953125	2	469.258717	936.50288	-0.49011	-0.00022999	-1.0972	-0.00051489	-1.5873	-0.00074488	469.2581529257791	38.975	0.38414	38.752	38.577	38.961	-0.22311					14	10	2	0	0	0	0.027866	1	3280	3280		23.042	0	1	112500			75898	310	52878	52966	83681	83681					0.0320890075471425
SRFSAILDE	9	Unmodified	_SRFSAILDE_					0	0	0			REV__FOXJ3|p.S293I|1|0.37|ENSG00000198815|chr1:42194946-42194946|C/A|missense_variant	REV__FOXJ3|p.S293I|1|0.37|ENSG00000198815|chr1:42194946-42194946|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.787841796875	2	519.266739	1036.51892	0.020936	1.0871E-05	-0.75155	-0.00039026	-0.73062	-0.00037939	519.2662770301014	25.089	0.4719	24.917	24.69	25.162	-0.17216					19	10	3	0	0	0	0.024511	1	1121	1121		32.812	11.865	1	110540	+		75899	36047	52879	52967	83682	83682					0.0021256220097711775
SRFYRAPEITA	11	Unmodified	_SRFYRAPEITA_					0	0	0		ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.2356262207031	3	437.566571	1309.67788	0.11546	5.052E-05	-0.19058	-8.3392E-05	-0.075124	-3.2872E-05	437.5664734954204	58.585	0.52281	58.404	58.228	58.75	-0.18134					22	12	2	0	0	0	0.024757	1	6457	6457		32.034	0	1	673530			75900	14736	52880	52968	83683	83683					0.035432758290880884
SRGAAPSSA	9	Unmodified	_SRGAAPSSA_					0	0	0			REV__ENSG00000124766|ENST00000244745|SOX4	REV__ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	402.2054443359375	2	402.203941	802.39333	1.094	0.00044	3.0622	0.0012316	4.1562	0.0016716	402.20510936484203	95.336	1.7812	95.336	94.659	96.44	0					129	41	5	0	0	0	0.80003	1	12134	12134		39.253	4.0521	1	7302700	+		75901	22785	52881	52969	83684	83684					-0.015771048646229247
SRGAAPSSA	9	Unmodified	_SRGAAPSSA_					0	0	0			REV__ENSG00000124766|ENST00000244745|SOX4	REV__ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.20574951171875	2	402.203941	802.39333	0.92344	0.00037141	3.3216	0.001336	4.2451	0.0017074	402.2052180634848	96.013	2.0859	95.876	95.199	97.285	-0.1367					136	47	4	0	0	0	0.84115	1	11857	11857		36.447	0.82846	1	5342800	+		75902	22785	52881	52969	83685	83685					-0.015771048646229247
SRGAKRSP	8	Unmodified	_SRGAKRSP_					0	0	0			REV__nc|ENSG00000167470|Q504T8|MIDN	REV__nc|ENSG00000167470|Q504T8|MIDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.227294921875	2	429.74885	857.483148	-0.58706	-0.00025229	0.84828	0.00036455	0.26122	0.00011226	429.74917466456907	27.653	0.4037	27.653	27.361	27.765	0					17	10	2	0	0	0	0.027866	1	1491	1491		45.972	18.09	1	126750	+		75903	26143	52882	52970	83686	83686					0.04870569534614333
SRGAMKAS	8	Unmodified	_SRGAMKAS_					0	0	0			REV__ENST00000486366.1_1_17:44668129-44707830:+|nuORF	REV__ENST00000486366.1_1_17:44668129-44707830:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.2328186035156	2	404.210712	806.406871	0.32823	0.00013267	3.3086	0.0013374	3.6368	0.0014701	404.2122803485652	84.736	0.1718	84.598	84.448	84.62	-0.13789					5	3	2	0	0	0	0.027866	1	10242	10242		13.454	3.1888	1	21252	+		75904	33587	52883	52971	83687	83687					-0.004075703570265432
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2586059570312	2	536.258914	1070.50327	-0.53837	-0.00028871	0.46769	0.0002508	-0.070679	-3.7902E-05	536.2591380997773	53.392	0.96784	53.392	52.974	53.942	0					78	26	4	0	0	0	0.54416	1	5792	5792		56.434	5.0983	1	6536600			75905	9294	52884	52972	83688	83688					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2586059570312	2	536.258914	1070.50327	-1.2288	-0.00065896	1.1564	0.00062011	-0.072452	-3.8853E-05	536.2595203467149	53.511	0.91032	53.364	52.91	53.821	-0.14723					89	24	5	0	0	0	0.67244	1	5787	5787		47.96	1.9873	1	6498200			75906	9294	52884	52972	83689	83689					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2592163085938	2	536.258914	1070.50327	-1.0964	-0.00058797	0.93546	0.00050165	-0.16097	-8.6324E-05	536.2594317199504	53.222	0.90029	53.318	52.906	53.806	0.095669					86	24	5	0	0	0	0.22902	2	5675	5665;5675		85.161	30.385	1	7505900			75907	9294	52884	52972	83690;83691	83691					-0.029157243160852886
SRGDKGAPGR	10	Unmodified	_SRGDKGAPGR_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7876892089844	2	500.767771	999.52099	0.60568	0.00030331	-2.2993	-0.0011514	-1.6936	-0.00084811	500.76672322179985	71.493	1.0126	71.493	70.744	71.756	0					32	25	2	0	0	0	0.03519	1	8616	8616		39.253	3.6345	1	245400			75908	4838	52885	52973	83692	83692					0.02121035729430787
SRGELDQVLR	10	Unmodified	_SRGELDQVLR_					0	0	0		ENST00000498794.1_1_3:49054806-49055376:-|nuORF;ENST00000467457.5_1_3:49053892-49055376:-|nuORF	ENST00000498794.1_1_3:49054806-49055376:-|nuORF	ENST00000498794.1_1_3:49054806-49055376:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	586.823486328125	2	586.822744	1171.63093	-0.77843	-0.0004568	0.6471	0.00037973	-0.13133	-7.7067E-05	586.8230057585232	18.162	0.49144	18.031	17.811	18.302	-0.13147					17	9	3	0	0	0	1.1266	1	251	251		29.17	4.6509	1	124440			75909	14838	52886	52974	83693	83693					0.05198416277949036
SRGFGVAL	8	Unmodified	_SRGFGVAL_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.1878662109375	2	403.729595	805.444637	1.2189	0.00049212	0.033566	1.3552E-05	1.2525	0.00050567	403.7292060058807	36.714	0.48533	36.505	36.24	36.726	-0.2092					20	11	3	0	0	0	0.027866	1	2850	2850		20.482	0	1	134160		+	75910	484	52887	52975	83694	83694					0.03413263900097263
SRGFLTIEQI	10	Unmodified	_SRGFLTIEQI_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.28515625	2	582.324588	1162.63462	-0.94822	-0.00055217	1.3011	0.00075764	0.35284	0.00020547	582.3250589409926	55.447	0.67034	55.231	54.931	55.602	-0.21551					43	18	3	0	0	0	0.03519	1	5913	5913		25.574	4.6271	1	1063700			75911	8323	52888	52976	83695	83695					0.05981086051792772
SRGFTRHSK	9	Unmodified	_SRGFTRHSK_					0	0	0			REV__ENSG00000151883|ENST00000281631|PARP8	REV__ENSG00000151883|ENST00000281631|PARP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7538452148438	2	538.291414	1074.56827	-0.53986	-0.0002906	2.7316	0.0014704	2.1918	0.0011798	538.293592975774	25.563	0.37624	25.392	25.205	25.581	-0.17078					12	8	2	0	0	0	0.024427	1	1215	1215		34.173	0	1	71211	+		75912	24803	52889	52977	83696	83696					0.033973150004158015
SRGFTRHSK	9	Unmodified	_SRGFTRHSK_					0	0	0			REV__ENSG00000151883|ENST00000281631|PARP8	REV__ENSG00000151883|ENST00000281631|PARP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7538452148438	2	538.291414	1074.56827	-1.0027	-0.00053975	1.4802	0.00079675	0.47745	0.00025701	538.2921586414373	25.556	0.29429	25.384	25.241	25.536	-0.17151					10	6	2	0	0	0	0.024495	1	1185	1185		14.137	3.8719	1	52523	+		75913	24803	52889	52977	83697	83697					0.033973150004158015
SRGGERGAGLL	11	Unmodified	_SRGGERGAGLL_					0	0	0			REV__ENST00000584655.5_1_17:33353525-33416206:-|nuORF	REV__ENST00000584655.5_1_17:33353525-33416206:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.76904296875	2	536.796529	1071.5785	-0.028253	-1.5166E-05	1.6676	0.00089518	1.6394	0.00088001	536.7974098887366	87.162	0.46367	87.183	86.927	87.391	0.021263					15	10	2	0	0	0	0.024804	1	10871	10871		56.434	0	1	139750	+		75914	32652	52890	52978	83698	83698					0.04557877935008037
SRGGLGPGLI	10	Unmodified	_SRGGLGPGLI_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.775634765625	2	463.774534	925.534515	0.08753	4.0594E-05	4.4505	0.002064	4.538	0.0021046	463.7763512355861	73.483	2.1596	73.483	73.034	75.194	0					92	53	3	0	0	0	0.85955	1	8998	8998		56.721	7.5103	1	3968600			75915	4191	52891	52979	83699	83699					0.0687689350867231
SRGGLGPGLI	10	Unmodified	_SRGGLGPGLI_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.7765808105469	2	463.774534	925.534515	0.23994	0.00011128	4.1575	0.0019282	4.3975	0.0020394	463.77628912674555	73.528	1.7868	73.538	73.068	74.854	0.0096512					72	43	2	0	0	0	0.91678	1	8908	8908		52.937	3.7259	1	3911000			75916	4191	52891	52979	83700	83700					0.0687689350867231
SRGGPGAASGA	11	Unmodified	_SRGGPGAASGA_					0	0	0			REV__ENST00000219271.3_1_16:58059493-58060384:+|nuORF	REV__ENST00000219271.3_1_16:58059493-58060384:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.21978759765625	2	444.220123	886.425693	-0.7853	-0.00034885	0.81921	0.00036391	0.033909	1.5063E-05	444.22038995571666	26.228	1.1555	25.992	25.762	26.918	-0.23603					55	30	2	0	0	0	0.97516	1	1334	1334		42.338	1.5599	1	3962800	+		75917	29335	52892	52980	83701	83701					-0.02206317461616436
SRGGPGAASGA	11	Unmodified	_SRGGPGAASGA_					0	0	0			REV__ENST00000219271.3_1_16:58059493-58060384:+|nuORF	REV__ENST00000219271.3_1_16:58059493-58060384:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.22015380859375	2	444.220123	886.425693	-0.81634	-0.00036264	0.76659	0.00034053	-0.049753	-2.2101E-05	444.2203445279721	26.072	1.5852	25.908	25.674	27.259	-0.16331					72	41	2	0	0	0	0.76305	1	1267	1267		59.931	8.7381	1	4879700	+		75918	29335	52892	52980	83702	83702					-0.02206317461616436
SRGGWGVE	8	Unmodified	_SRGGWGVE_					0	0	0		ENST00000370071.6_1_1:107682646-107690770:+|nuORF	ENST00000370071.6_1_1:107682646-107690770:+|nuORF	ENST00000370071.6_1_1:107682646-107690770:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5180358886719	2	424.206484	846.398415	-0.209	-8.8661E-05	1.3326	0.00056528	1.1236	0.00047662	424.20639909966104	30.574	0.84304	30.33	29.948	30.791	-0.24415					31	19	3	0	0	0	0.027866	1	2011	2011		18.324	0	1	99479			75919	12947	52893	52981	83703	83703					-0.030928010019920293
SRGHSIKT	8	Unmodified	_SRGHSIKT_					0	0	0		ENST00000464067.1_1_11:124626431-124626668:-|nuORF;ENST00000485116.5_1_11:124623544-124626668:-|nuORF;ENSG00000149564|ENST00000278927|ESAM	ENST00000464067.1_1_11:124626431-124626668:-|nuORF	ENST00000464067.1_1_11:124626431-124626668:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.4973449707031	2	443.248683	884.482814	0.091042	4.0354E-05	-0.042999	-1.9059E-05	0.048043	2.1295E-05	443.2485550279368	29.478	0.83713	29.328	28.912	29.75	-0.14952					37	19	3	0	0	0	0.027866	1	1734	1734		14.137	3.8719	1	492270			75920	6101	52894	52982	83704	83704					0.035951498147596794
SRGILPSALD	10	Unmodified	_SRGILPSALD_					0	0	0			REV__ENSG00000157456|ENST00000288207|CCNB2	REV__ENSG00000157456|ENST00000288207|CCNB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.7870483398438	2	514.790381	1027.56621	-0.18278	-9.4094E-05	0.28297	0.00014567	0.10019	5.1574E-05	514.7906247603381	59.176	0.80627	58.988	58.663	59.469	-0.18795					35	19	2	0	0	0	0.03519	1	6596	6596		23.523	3.5259	1	615830	+		75921	25132	52895	52983	83705	83705					0.05352841471949432
SRGINQGGW	9	Unmodified	_SRGINQGGW_					0	0	0			REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7435607910156	2	487.743765	973.472977	0.085933	4.1913E-05	-0.35647	-0.00017387	-0.27054	-0.00013195	487.7434741509761	29.624	0.92389	29.475	29.044	29.967	-0.14952					61	21	4	0	0	0	0.20967	1	1795	1795		87.754	5.4493	1	2003500	+		75922	28240	52896	52984	83706	83706					-0.014820381906133662
SRGINQGGW	9	Unmodified	_SRGINQGGW_					0	0	0			REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	487.743765	973.472977	-0.78876	-0.00038471	0.48208	0.00023513	-0.30668	-0.00014958	487.74387614569383	29.789	0.80448	29.544	29.099	29.903	-0.24524	0.040358	0.00040595	NaN	87.754	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024500	+		75923	28240	52896	52984							-0.014820381906133662
SRGKLILAQYT	11	Unmodified	_SRGKLILAQYT_					0	0	0			REV__ENST00000586783.5_1_19:14000644-14000983:-|nuORF	REV__ENST00000586783.5_1_19:14000644-14000983:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	625.367431640625	2	625.366787	1248.71902	-0.35092	-0.00021946	0.25284	0.00015812	-0.098082	-6.1337E-05	625.3666955724143	105.32	0.42418	105.32	105.09	105.52	-0.0015945					29	12	3	0	0	0	0.95664	1	13445	13445		46.457	0	1	1686700	+		75924	35606	52897	52985	83707	83707					0.10461036868559859
SRGKPLPQLN	10	Unmodified	_SRGKPLPQLN_					0	0	0		GTF2IRD2B|p.S745N|1|0.22|ENSG00000174428|chr7:75148681-75148681|G/A|missense_variant	GTF2IRD2B|p.S745N|1|0.22|ENSG00000174428|chr7:75148681-75148681|G/A|missense_variant	GTF2IRD2B|p.S745N|1|0.22|ENSG00000174428|chr7:75148681-75148681|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	554.7662353515625	2	555.324922	1108.63529	0.24562	0.0001364	2.1121	0.0011729	2.3577	0.0013093	555.3244421187177	52.603	0.93399	52.695	52.363	53.297	0.091942					53	24	4	0	0	0	0.03519	1	5658	5658		40.778	0	1	873420			75925	17701	52898	52986	83708	83708					0.08531925491524817
SRGKRKTP	8	Unmodified	_SRGKRKTP_					0	0	0			REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7607727050781	2	465.2856	928.556647	0.44588	0.00020746	2.3094	0.0010745	2.7553	0.001282	465.286813934306	85.934	0.98429	85.934	85.748	86.733	0					36	22	2	0	0	0	0.027866	1	10856	10856		20.947	0	1	78785	+		75926	21989	52899	52987	83709	83709					0.08951117977085232
SRGKSSRSTRR	11	Unmodified	_SRGKSSRSTRR_					0	0	0			REV__chr5:76812387-76832690|376|11.08|0.11|6.64|+|2|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812387|None,F2RL1|9	REV__chr5:76812387-76832690|376|11.08|0.11|6.64|+|2|TE_info:SVA_D,SVA_D_dup452,SVA,Retroposon,donor,+,76811569,76812387|None,F2RL1|9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	639.3637084960938	2	639.36089	1276.70723	1.0523	0.00067282	2.6143	0.0016715	3.6666	0.0023443	639.3623736955627	109.93	0.4075	109.92	109.75	110.16	-0.009491					54	18	4	0	0	0	1.0429	1	13900	13900		27.047	1.4733	1	3628300	+		75927	19447	52900	52988	83710	83710					0.0799423289790866
SRGLAKRI	8	Unmodified	_SRGLAKRI_					0	0	0			REV__SECISBP2|p.N730I|1|0.33|ENSG00000187742|chr9:89357486-89357486|A/T|missense_variant	REV__SECISBP2|p.N730I|1|0.33|ENSG00000187742|chr9:89357486-89357486|A/T|missense_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	450.7900085449219	2	450.790518	899.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.027	1	19.859	19.359	20.359	-0.16774								0	0	0	0.66038	1	497	497		44.117	0	1		+		75928	37472	52901	52989	83711	83711					0.11268305982457605
SRGLFNDKFWS	11	Unmodified	_SRGLFNDKFWS_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2488098144531	3	452.894688	1355.66223	-0.16123	-7.3021E-05	-0.53758	-0.00024347	-0.69882	-0.00031649	452.8942262690659	33.726	0.576	33.721	33.412	33.988	-0.0045624					29	14	3	0	0	0	0.024735	1	2434	2434		21.78	0	1	103170	+		75929	28824	52902	52990	83712	83712					-0.0013701068796763138
SRGLKGPPGP	10	Unmodified	_SRGLKGPPGP_					0	0	0		ENSG00000196739|ENST00000356083|COL27A1;nc|ENSG00000196739|Q8IZC6-2|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2853088378906	2	483.279983	964.545414	-0.1251	-6.046E-05	-1.1881	-0.0005742	-1.3132	-0.00063467	483.2793470094385	54.813	0.2182	54.582	54.53	54.748	-0.23087					9	5	2	0	0	0	0.03519	1	5862	5862		5.5578	0	1	570410			75930	9918	52903	52991	83713	83713					0.06172295882947765
SRGLRMRF	8	Unmodified	_SRGLRMRF_					0	0	0			REV__ENST00000530167.1_1_11:118965174-118965585:-|nuORF	REV__ENST00000530167.1_1_11:118965174-118965585:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.26885986328125	2	511.787453	1021.56035	-1.1074	-0.00056674	-4.4108	-0.0022574	-5.5182	-0.0028241	511.78497561426724	44.031	0.41697	43.886	43.745	44.162	-0.14471					17	11	2	0	0	0	0.027866	1	4163	4163		8.2313	0	1	105470	+		75931	34530	52904	52992	83714	83714					0.050434644792971994
SRGLSEPAL	9	Unmodified	_SRGLSEPAL_					0	0	0		ENST00000373243.6_1_1:36023512-36023710:+|nuORF	ENST00000373243.6_1_1:36023512-36023710:+|nuORF	ENST00000373243.6_1_1:36023512-36023710:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2583312988281	2	465.256174	928.497795	0.89203	0.00041502	2.8605	0.0013309	3.7525	0.0017459	465.25703480930673	63.63	1.3182	63.63	63.336	64.654	0					64	35	4	0	0	0	0.5973	1	7467	7467		52.937	3.4952	1	3007000			75932	13071	52905	52993	83715	83715					0.03068596892092046
SRGNSQLLLS	10	Unmodified	_SRGNSQLLLS_					0	0	0		nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000545200.5_1_12:6666161-6669478:-|nuORF	nc|ENSG00000111641|P46087-2|NOP2	nc|ENSG00000111641|P46087-2|NOP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.801513671875	2	537.798737	1073.58292	4.6271	0.0024885	-0.092219	-4.9595E-05	4.5349	0.0024389	537.7985595209067	17.015	0.35475	17.073	16.929	17.284	0.057352					19	12	2	0	0	0	1.1217	1	99	99		21.96	0	1	43341			75933	3128	52906	52994	83716	83716					0.04907342357910238
SRGPCERLR	9	Unmodified	_SRGPCERLR_					0	0	0			REV__ENSG00000104059|ENST00000261275|ENTREP2	REV__ENSG00000104059|ENST00000261275|ENTREP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.2958374023438	2	537.285274	1072.556	-1.5068	-0.00080959	-3.9537	-0.0021242	-5.4605	-0.0029338	537.2831364946013	37.643	0.48143	37.575	37.484	37.966	-0.06731					24	13	3	0	0	0	0.024484	1	3081	3081		23.523	1.8369	1	358610	+		75934	21415	52907	52995	83717	83717					0.02261955265726101
SRGPSRPL	8	Unmodified	_SRGPSRPL_					0	0	0			REV__nc|ENSG00000143443|Q9BUN1-2|MENT	REV__nc|ENSG00000143443|Q9BUN1-2|MENT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.77978515625	2	435.251226	868.487899	-0.044169	-1.9225E-05	-0.94799	-0.00041262	-0.99216	-0.00043184	435.2513754778603	42.164	0.45097	42.041	41.82	42.271	-0.12299					26	11	3	0	0	0	0.027866	1	3800	3800		6.3127	0	1	201370	+		75935	24248	52908	52996	83718	83718					0.048394536773685104
SRGQRPKH	8	Unmodified	_SRGQRPKH_					0	0	0			REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.74761962890625	2	483.273024	964.531495	1.4778	0.0007142	2.0379	0.00098485	3.5157	0.001699	483.27389169385935	59.044	0.90284	58.857	58.538	59.44	-0.18705					44	24	2	0	0	0	0.027866	1	6655	6655		31.955	3.7006	1	4248800	+		75936	34268	52909	52997	83719	83719					0.04781063174505107
SRGREVKLV	9	Unmodified	_SRGREVKLV_					0	0	0		ENST00000343106.9_1_4:103747817-103748066:-|nuORF	ENST00000343106.9_1_4:103747817-103748066:-|nuORF	ENST00000343106.9_1_4:103747817-103748066:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3033447265625	2	522.31964	1042.62473	-0.049242	-2.572E-05	0.010221	5.3385E-06	-0.039021	-2.0382E-05	522.3194605147721	20.99	0.53154	20.813	20.484	21.016	-0.17721					22	10	3	0	0	0	0.024457	1	629	629		37.159	0	1	141730			75937	12526	52910	52998	83720	83720					0.1051194283706991
SRGRFLKI	8	Unmodified	_SRGRFLKI_					0	0	0		nc|ENSG00000172733|Q9UJV8-2|PURG;ENSG00000172733|ENST00000523392|PURG	nc|ENSG00000172733|Q9UJV8-2|PURG	nc|ENSG00000172733|Q9UJV8-2|PURG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7825012207031	2	488.806168	975.597784	0.7966	0.00038938	-1.7963	-0.00087802	-0.99966	-0.00048864	488.8052781201776	36.943	0.96971	36.943	36.263	37.233	0					41	25	3	0	0	0	0.027866	1	2954	2954		23.042	10.083	1	412870			75938	8299	52911	52999	83721	83721					0.10900879016560339
SRGRQLGGI	9	Unmodified	_SRGRQLGGI_					0	0	0			REV__ENSG00000105523|ENST00000263266|FAM83E	REV__ENSG00000105523|ENST00000263266|FAM83E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.767822265625	2	472.275232	942.535912	0.59512	0.00028106	0.79004	0.00037312	1.3852	0.00065418	472.27530938472245	77.347	0.41257	77.085	76.771	77.184	-0.26202					16	10	2	0	0	0	0.024427	1	9197	9197		26.693	0	1	354580	+		75939	21535	52912	53000	83722	83722					0.06234527597428041
SRGRRGTQ	8	Unmodified	_SRGRRGTQ_					0	0	0		ENST00000291442.3_1_19:17356425-17356737:-|nuORF	ENST00000291442.3_1_19:17356425-17356737:-|nuORF	ENST00000291442.3_1_19:17356425-17356737:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.22515869140625	2	459.254831	916.49511	-0.63498	-0.00029162	-1.5012	-0.00068942	-2.1362	-0.00098104	459.2542580793487	26.299	0.3512	26.063	25.88	26.232	-0.23603					14	10	2	0	0	0	0.027866	1	1331	1331		40.778	0	1	244910			75940	11797	52913	53001	83723	83723					0.033521862778115974
SRGRRLPGAA	10	Unmodified	_SRGRRLPGAA_					0	0	0			REV__ENST00000500450.6_1_3:128890586-128902725:-|nuORF	REV__ENST00000500450.6_1_3:128890586-128902725:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7957763671875	2	520.807231	1039.59991	-1.0876	-0.00056644	2.2277	0.0011602	1.1401	0.00059376	520.8082722823494	62.399	0.49159	62.462	62.237	62.728	0.062767					18	12	2	0	0	0	0.03519	1	7153	7153		60.118	14.146	1	839260	+		75941	33905	52914	53002	83724	83724					0.08169307754383226
SRGRSPSPI	9	Unmodified	_SRGRSPSPI_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7438049316406	2	478.76724	955.519927	-0.29466	-0.00014107	3.8565	0.0018464	3.5619	0.0017053	478.7687108942801	29.446	0.59843	29.449	29.276	29.875	0.0031357					17	14	2	0	0	0	0.018983	1	1852	1852		62.107	6.6032	1	47072			75942	7832	52915	53003	83725	83725					0.04038821360506972
SRGRSYYEG	9	Unmodified	_SRGRSYYEG_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.2828369140625	2	537.751787	1073.48902	-1.3448	-0.00072319	0.1024	5.5064E-05	-1.2424	-0.00066812	537.7514922829845	44.153	0.51408	43.908	43.672	44.186	-0.2444					28	13	3	0	0	0	0.024495	1	4123	4123		26.693	4.1133	1	650830	+		75943	22351	52916	53004	83726	83726					-0.04478376744395973
SRGSLSSH	8	Unmodified	_SRGSLSSH_					0	0	0		ENSG00000100038|ENST00000357179|TOP3B;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENST00000489581.1_1_22:22326749-22330123:-|nuORF;TOP3B|p.G403Vfs*79|1|0.33|ENSG00000100038|chr22:21962890-21962890|C/-|frameshift_variant	ENSG00000100038|ENST00000357179|TOP3B	ENSG00000100038|ENST00000357179|TOP3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2205810546875	2	415.709391	829.404229	-0.2085	-8.6674E-05	0.58648	0.00024381	0.37798	0.00015713	415.7095529298664	24.267	1.3341	24.092	23.743	25.077	-0.17484					63	30	3	0	0	0	0.027866	1	1098	1098		16.473	5.6076	1	303140			75944	2123	52917	53005	83727	83727					-0.017297024903314195
SRGSYNPL	8	Unmodified	_SRGSYNPL_					0	0	0		ENSG00000092067|ENST00000206513|CEBPE	ENSG00000092067|ENST00000206513|CEBPE	ENSG00000092067|ENST00000206513|CEBPE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.2396240234375	2	447.227417	892.44028	-0.043507	-1.9458E-05	-0.63419	-0.00028363	-0.6777	-0.00030308	447.22720028270487	54.566	0.24982	54.322	54.266	54.516	-0.24416					8	6	2	0	0	0	0.027866	1	5819	5819		66.429	0	1	489160			75945	1977	52918	53006	83728	83728					-0.010242453134765128
SRGTGHCI	8	Unmodified	_SRGTGHCI_					0	0	0		ENST00000443617.6_1_15:64017522-64017606:-|nuORF	ENST00000443617.6_1_15:64017522-64017606:-|nuORF	ENST00000443617.6_1_15:64017522-64017606:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.7220458984375	2	415.700512	829.38647	-0.00056114	-2.3327E-07	-2.0504	-0.00085234	-2.0509	-0.00085257	415.69954134041865	42.35	0.52766	42.376	42.152	42.68	0.026012					21	14	2	0	0	0	0.027866	1	3858	3858		26.796	0	1	470720			75946	14402	52919	53007	83729	83729					-0.03504741016843127
SRGTSEFSRLY	11	Unmodified	_SRGTSEFSRLY_					0	0	0			REV__ENST00000417871.5_1_21:34958320-34959859:-|nuORF	REV__ENST00000417871.5_1_21:34958320-34959859:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.77978515625	3	434.886081	1301.63641	-0.00023445	-1.0196E-07	-1.1996	-0.00052167	-1.1998	-0.00052177	434.88472520050937	42.295	0.41726	42.172	42.037	42.454	-0.12299					17	10	2	0	0	0	0.024734	1	3800	3800		16.53	2.2866	1	75726	+		75947	32103	52920	53008	83730	83730					-0.0023390493022361625
SRGVPLDNVT	10	Unmodified	_SRGVPLDNVT_					0	0	0			REV__ENST00000498785.1_1_19:12910655-12911052:-|nuORF	REV__ENST00000498785.1_1_19:12910655-12911052:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2415161132812	2	529.285463	1056.55637	-1.6892	-0.00089407	0.51961	0.00027502	-1.1696	-0.00061905	529.2853095423026	44.02	0.55036	44.02	43.731	44.281	0					24	15	2	0	0	0	0.03519	1	4132	4132		91.265	34.831	1	615650	+		75948	22346	52921	53009	83731	83731					0.030356534665543222
SRGVYDFKA	9	Unmodified	_SRGVYDFKA_					0	0	0			REV__ENSG00000196935|ENST00000355086|SRGAP1	REV__ENSG00000196935|ENST00000355086|SRGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7691040039062	2	521.769448	1041.52434	0.17162	8.9544E-05	-0.73042	-0.00038111	-0.5588	-0.00029156	521.768922838575	55.615	0.75095	55.615	55.284	56.035	0					59	20	4	0	0	0	0.30449	1	6158	6158		75.043	16.813	1	8505200	+		75949	28241	52922	53010	83732	83732					0.005242857834218739
SRGVYDFKA	9	Unmodified	_SRGVYDFKA_					0	0	0			REV__ENSG00000196935|ENST00000355086|SRGAP1	REV__ENSG00000196935|ENST00000355086|SRGAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.769448	1041.52434	-1.067	-0.00055673	-2.3435	-0.0012228	-3.4105	-0.0017795	521.7689626136213	55.888	0.14122	55.731	55.607	55.748	-0.15656	0.13864	-0.0021845	NaN	75.043	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58666	+		75950	28241	52922	53010							0.005242857834218739
SRGWRVVLP	9	Unmodified	_SRGWRVVLP_					0	0	0		ENST00000393229.3_1_9:135037571-135041761:+|nuORF	ENST00000393229.3_1_9:135037571-135041761:+|nuORF	ENST00000393229.3_1_9:135037571-135041761:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7595825195312	2	535.3169	1068.61925	-0.82015	-0.00043904	-0.33245	-0.00017796	-1.1526	-0.000617	535.3164964721564	42.052	0.31763	41.82	41.62	41.937	-0.23186					11	8	2	0	0	0	0.024541	1	3757	3757		24.203	2.2429	1	148230			75951	13442	52923	53011	83733	83733					0.08768264045261276
SRGWVWAM	8	Unmodified	_SRGWVWAM_					0	0	0		OCA2|p.R421W|1|0.33|ENSG00000104044|chr15:27985167-27985167|G/A|missense_variant	OCA2|p.R421W|1|0.33|ENSG00000104044|chr15:27985167-27985167|G/A|missense_variant	OCA2|p.R421W|1|0.33|ENSG00000104044|chr15:27985167-27985167|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7416076660156	2	496.742179	991.469806	-1.1579	-0.0005752	-0.81735	-0.00040601	-1.9753	-0.00098121	496.7416700945716	26.127	0.94948	25.963	25.716	26.666	-0.16331					84	26	4	0	0	0	0.99042	1	1320	1320		38.806	3.1879	1	7449900			75952	18900	52924	53012	83734	83734					-0.026270045689898325
SRHAPPNVRK	10	Unmodified	_SRHAPPNVRK_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	581.8216552734375	2	581.333613	1160.65267	-2.0884	-0.0012141	3.8728	0.0022514	1.7844	0.0010373	581.3357608646568	65.052	0.41478	64.789	64.613	65.027	-0.2626					14	10	2	0	0	0	0.03519	1	7634	7634		30.318	11.214	1	121610	+		75953	28722	52925	53013	83735	83735					0.0787726581716015
SRHAVETPP	9	Unmodified	_SRHAVETPP_					0	0	0			REV__ENST00000377482.9_1_1:8072451-8072514:-|nuORF	REV__ENST00000377482.9_1_1:8072451-8072514:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2655944824219	2	497.259248	992.503943	0.13197	6.5623E-05	-0.79937	-0.0003975	-0.6674	-0.00033187	497.2582537434477	37.473	0.56734	37.505	36.957	37.525	0.032269					21	14	2	0	0	0	0.023635	1	3004	3004		47.657	7.0847	1	67096	+		75954	31376	52926	53014	83736	83736					0.007391151236220139
SRHHGPTI	8	Unmodified	_SRHHGPTI_					0	0	0		ENST00000540645.5_1_9:116823569-116838999:-|nuORF;ENSG00000106927|ENST00000265132|AMBP	ENST00000540645.5_1_9:116823569-116838999:-|nuORF	ENST00000540645.5_1_9:116823569-116838999:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24822998046875	2	452.741025	903.467498	-0.18886	-8.5504E-05	-0.60383	-0.00027338	-0.79269	-0.00035888	452.7407013557931	25.979	0.76107	25.979	25.363	26.124	0					39	17	4	0	0	0	0.027866	1	1215	1215		31.955	1.4512	1	221080			75955	2819	52927	53015	83737	83737					0.011902830175813506
SRHLAIVQ	8	Unmodified	_SRHLAIVQ_					0	0	0			REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	REV__nc|ENSG00000099715|Q9BZA8|PCDH11Y	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2869567871094	2	462.274701	922.534849	0.69744	0.00032241	-2.4219	-0.0011196	-1.7244	-0.00079715	462.27365416942496	52.598	0.34505	52.69	52.404	52.749	0.091938					16	8	3	0	0	0	0.027866	1	5544	5544		6.3127	0	1	199010	+		75956	36514	52928	53016	83738	83738					0.070483132285176
SRHPCLSKA	9	Unmodified	_SRHPCLSKA_					0	0	0		ENST00000405201.5_1_12:124809557-124809872:-|nuORF	ENST00000405201.5_1_12:124809557-124809872:-|nuORF	ENST00000405201.5_1_12:124809557-124809872:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7506103515625	2	499.763643	997.512734	-0.64629	-0.00032299	-3.8495	-0.0019238	-4.4958	-0.0022468	499.76157136445636	35.781	0.9451	35.576	35.111	36.056	-0.20518					28	25	2	0	0	0	0.024447	1	2797	2797		40.778	11.629	1	794690			75957	13711	52929	53017	83739	83739					0.013877654884367985
SRHPCLSKA	9	Unmodified	_SRHPCLSKA_					0	0	0		ENST00000405201.5_1_12:124809557-124809872:-|nuORF	ENST00000405201.5_1_12:124809557-124809872:-|nuORF	ENST00000405201.5_1_12:124809557-124809872:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.75103759765625	2	499.763643	997.512734	-0.24255	-0.00012122	-4.1744	-0.0020862	-4.4169	-0.0022074	499.76134781158004	35.748	0.62289	35.536	35.193	35.816	-0.21246					35	16	3	0	0	0	0.024447	1	2748	2748		40.778	9.2484	1	845760			75958	13711	52929	53017	83740	83740					0.013877654884367985
SRHPCLSKA	9	Unmodified	_SRHPCLSKA_					0	0	0		ENST00000405201.5_1_12:124809557-124809872:-|nuORF	ENST00000405201.5_1_12:124809557-124809872:-|nuORF	ENST00000405201.5_1_12:124809557-124809872:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.751953125	2	499.763643	997.512734	0.068025	3.3997E-05	-2.8069	-0.0014028	-2.7389	-0.0013688	500.2641926488571	36.181	0.1713	35.964	35.879	36.05	-0.21661					5	4	2	0	0	0	0.024447	1	2796	2796		25.574	0	1	62612			75959	13711	52929	53017	83741	83741					0.013877654884367985
SRHPPLRL	8	Unmodified	_SRHPPLRL_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.30157470703125	2	488.295968	974.577383	0.30204	0.00014749	1.6901	0.00082525	1.9921	0.00097274	488.2966471978305	97.982	0.92247	97.992	97.684	98.607	0.010231					34	21	2	0	0	0	0.81662	1	12469	12469		57.811	4.4598	1	258200	+		75960	36453	52930	53018	83742	83742					0.08907708356753119
SRHRFHLAL	9	Unmodified	_SRHRFHLAL_					0	0	0			REV__ENSG00000151474|ENST00000357447|FRMD4A	REV__ENSG00000151474|ENST00000357447|FRMD4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2679443359375	2	568.825424	1135.63629	3.0824	0.0017534	-3.727	-0.00212	-0.64455	-0.00036664	568.8227281025247	18.492	0.25035	18.249	18.074	18.324	-0.24256					6	4	2	0	0	0	0.024325	1	286	286		31.955	0	1	28822	+		75961	24774	52931	53019	83743	83743					0.07390184651080745
SRHRGAFEL	9	Unmodified	_SRHRGAFEL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.7871704101562	2	536.785964	1071.55738	-0.76617	-0.00041127	3.0816	0.0016541	2.3154	0.0012429	536.7875504060858	79.723	0.75799	79.723	79.405	80.163	0					26	17	2	0	0	0	0.45795	1	9900	9900		62.107	4.2961	1	437840			75962	3505	52932	53020	83744	83744					0.02445912626126301
SRHRQVANH	9	Unmodified	_SRHRQVANH_					0	0	0			REV__ENSG00000166747|ENST00000299980|AP1G1	REV__ENSG00000166747|ENST00000299980|AP1G1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.7598266601562	2	552.792112	1103.56967	-0.37576	-0.00020772	-0.72991	-0.00040349	-1.1057	-0.00061121	552.7918144344874	52.005	0.10865	51.886	51.796	51.904	-0.11875					4	2	2	0	0	0	0.024447	1	5370	5370		25.574	6.4705	1	43413	+		75963	26051	52933	53021	83745	83745					0.02202949089178219
SRHSGGDD	8	Unmodified	_SRHSGGDD_					0	0	0		ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.72198486328125	2	415.673005	829.331458	0.95331	0.00039627	1.9907	0.00082748	2.944	0.0012237	415.6746110513211	42.373	0.27306	42.373	42.187	42.461	0					10	7	2	0	0	0	0.027866	1	3908	3908		8.2313	0.54101	1	167240			75964	9364	52934	53022	83746	83746					-0.09003456283744526
SRHTSMQEV	9	Unmodified	_SRHTSMQEV_					0	0	0			REV__nc|ENSG00000076356|O75051-2|PLXNA2	REV__nc|ENSG00000076356|O75051-2|PLXNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.282470703125	2	537.753472	1073.49239	-1.0179	-0.00054739	-3.5516	-0.0019099	-4.5695	-0.0024573	537.7513089803841	43.998	0.54198	43.893	43.661	44.203	-0.10468					29	14	3	0	0	0	0.024418	1	4116	4116		37.812	21.338	1	569820	+		75965	36475	52935	53023	83747	83747					-0.04141449962025945
SRIAGLSKSL	10	Unmodified	_SRIAGLSKSL_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8265380859375	2	516.314023	1030.61349	-0.27192	-0.0001404	-4.3185	-0.0022297	-4.5904	-0.0023701	516.8134499341774	57.47	0.81361	57.236	56.729	57.543	-0.23363					29	21	2	0	0	0	0.03519	1	6209	6209		65.465	8.7443	1	97599			75966	18157;37870	52936	53024	83748	83748					0.0994112074295117
SRIARALAL	9	Unmodified	_SRIARALAL_					0	0	0		ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.8099670410156	2	485.811451	969.608348	0.026188	1.2722E-05	2.1166	0.0010282	2.1427	0.001041	485.81251497527137	106.76	0.47713	106.76	106.63	107.1	-0.003479					21	15	2	0	0	0	0.84115	1	13665	13665		36.447	2.9312	1	211050			75967	5594	52937	53025	83749	83749					0.12232861670975126
SRIARFLHLH	10	Unmodified	_SRIARFLHLH_					0	0	0			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	624.3749389648438	2	625.367456	1248.72036	-0.16968	-0.00010611	-0.87899	-0.00054969	-1.0487	-0.0006558	625.3666785728595	100.65	0.51039	100.65	100.38	100.89	-0.0054474					30	12	3	0	0	0	0.03519	1	12792	12792		24.519	14.814	1	643370	+		75968	19711	52938	53026	83750	83750					0.10594715747993178
SRIARSHLEH	10	Unmodified	_SRIARSHLEH_					0	0	0		ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	ENST00000422653.1_1_9:88371036-88385349:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.5706787109375	3	402.554777	1204.6425	0.33237	0.0001338	-2.0772	-0.00083621	-1.7449	-0.00070241	402.8878185168137	20.012	0.486	19.788	19.631	20.117	-0.22344					16	9	3	0	0	0	0.03519	1	461	461		28.577	4.3008	1	23602			75969	14009	52939	53027	83751	83751					0.04836658091971913
SRICYRAT	8	Unmodified	_SRICYRAT_					0	0	0			REV__ENSG00000101230|ENST00000262487|ISM1	REV__ENSG00000101230|ENST00000262487|ISM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2883605957031	2	485.250369	968.486184	3.3214	0.0016117	-0.86656	-0.0004205	2.4548	0.0011912	485.2485655747414	17.884	0.1945	17.884	17.746	17.94	0					5	3	2	0	0	0	0.027866	1	221	221		35.618	5.1146	1	18947	+		75970	21206	52940	53028	83752	83752					0.0006807659710830194
SRIDRRSRIYN	11	Unmodified	_SRIDRRSRIYN_					0	0	0			REV__ENSG00000062725|ENST00000083182|APPBP2	REV__ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2846374511719	3	479.267407	1434.78039	-0.49627	-0.00023785	0.084935	4.0707E-05	-0.41134	-0.00019714	479.2672250405086	75.53	0.49984	75.53	75.269	75.769	0					19	13	3	0	0	0	0.024816	1	9316	9316		11.932	0	1	1847400	+		75971	20266	52941	53029	83753	83753					0.08039361620581076
SRIEVANL	8	Unmodified	_SRIEVANL_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2812194824219	2	451.258717	900.50288	0.29487	0.00013306	-0.030833	-1.3914E-05	0.26404	0.00011915	451.2585367133702	50.673	0.51513	50.492	50.245	50.76	-0.18071					27	13	3	0	0	0	0.027866	1	5196	5196		26.693	0	1	315930			75972	4809	52942	53030	83754	83754					0.0486490075469419
SRIFFLSN	8	Unmodified	_SRIFFLSN_					0	0	0		ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.2900390625	2	492.269084	982.523616	-0.97737	-0.00048113	-3.5599	-0.0017524	-4.5373	-0.0022336	492.26743630286126	34.402	0.59219	34.453	34.089	34.682	0.050255					31	14	3	0	0	0	0.027866	1	2460	2460		15.642	0	1	323300			75973	12259	52943	53031	83755	83755					0.03165491134370768
SRIFFLSN	8	Unmodified	_SRIFFLSN_					0	0	0		ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.269084	982.523616	-0.23184	-0.00011413	-4.3278	-0.0021304	-4.5596	-0.0022446	492.26688667990237	34.566	0.49384	34.566	34.292	34.785	0	0.09976	-0.00031929	NaN	12.812	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384190			75974	12259	52943	53031							0.03165491134370768
SRIFFLSN	8	Unmodified	_SRIFFLSN_					0	0	0		ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	ENST00000324695.8_1_2:234873347-234879062:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.269084	982.523616	-0.13078	-6.4377E-05	-4.4564	-0.0021937	-4.5871	-0.0022581	492.2667560981322	34.386	0.49767	34.381	34.112	34.61	-0.0045624	-0.085757	-0.00044587	NaN	12.812	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423410			75975	12259	52943	53031							0.03165491134370768
SRILALAE	8	Unmodified	_SRILALAE_					0	0	0		ENST00000315377.4_1_9:19379575-19380122:-|nuORF	ENST00000315377.4_1_9:19379575-19380122:-|nuORF	ENST00000315377.4_1_9:19379575-19380122:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.21923828125	2	436.763635	871.512717	-1.0111	-0.0004416	1.0892	0.00047572	0.07811	3.4116E-05	436.7639471250688	44.631	0.50813	44.482	44.288	44.796	-0.1488					27	14	3	0	0	0	0.027866	1	4285	4285		17.365	0	1	413900			75976	12136	52944	53032	83756	83756					0.071820887600893
SRILAPQT	8	Unmodified	_SRILAPQT_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.4973449707031	2	443.261259	884.507966	-0.095914	-4.2515E-05	-2.8642	-0.0012696	-2.9601	-0.0013121	443.26046883778844	29.074	0.84766	28.924	28.324	29.171	-0.14952					32	19	3	0	0	0	0.027866	1	1734	1734		14.137	3.8719	1	88594			75977	18494	52945	53033	83757	83757					0.0610920461731439
SRILAPQT	8	Unmodified	_SRILAPQT_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.261259	884.507966	-1.2989	-0.00057575	1.3951	0.00061839	0.096187	4.2636E-05	443.2616462920329	29.176	0.65125	28.931	28.534	29.185	-0.24524	0.0099109	0.00081956	NaN	12.812	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61771			75978	18494	52945	53033							0.0610920461731439
SRILAPQT	8	Unmodified	_SRILAPQT_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.261259	884.507966	-0.50667	-0.00022459	0.54865	0.0002432	0.041986	1.8611E-05	443.26145129593687	29.08	0.64935	28.908	28.507	29.156	-0.17258	-0.012997	6.9187E-05	NaN	12.812	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88720			75979	18494	52945	53033							0.0610920461731439
SRILLSSL	8	Unmodified	_SRILLSSL_					0	0	0		ENST00000546921.1_1_12:53343235-53343546:-|nuORF	ENST00000546921.1_1_12:53343235-53343546:-|nuORF	ENST00000546921.1_1_12:53343235-53343546:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.22015380859375	2	444.779285	887.544017	-0.86449	-0.00038451	0.69846	0.00031066	-0.16603	-7.3849E-05	444.7796888211488	26.175	0.41666	26.012	25.716	26.133	-0.16331					18	12	2	0	0	0	0.027866	1	1267	1267		23.042	2.0956	1	113890			75980	16515	52946	53034	83758	83758					0.09574661794192707
SRILRVHR	8	Unmodified	_SRILRVHR_					0	0	0		ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	ENSG00000069764|ENST00000438167|PLA2G10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.79296875	2	518.827966	1035.64138	-0.48402	-0.00025113	1.8901	0.00098064	1.4061	0.00072951	518.8288924393022	64.378	0.31319	64.146	63.945	64.258	-0.23215					11	7	2	0	0	0	0.027866	1	7285	7285		18.324	0	1	67538			75981	1406	52947	53035	83759	83759					0.12498488513710981
SRINLNRGL	9	Unmodified	_SRINLNRGL_					0	0	0			REV__ENSG00000101966|ENST00000371199|XIAP	REV__ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3023681640625	2	521.809439	1041.60433	-0.57891	-0.00030208	2.2585	0.0011785	1.6796	0.00087644	521.8104240439711	69.464	0.50877	69.479	69.245	69.754	0.015121					24	12	3	0	0	0	0.024344	1	8252	8252		64.207	16.248	1	291410	+		75982	21270	52948	53036	83760	83760					0.0851877217726269
SRINNFDLV	9	Unmodified	_SRINNFDLV_					0	0	0			REV__ENSG00000104371|ENST00000220812|DKK4	REV__ENSG00000104371|ENST00000220812|DKK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.824462890625	2	539.288005	1076.56146	-1.0472	-0.00056472	-0.96088	-0.00051819	-2.008	-0.0010829	539.2867576044786	48.601	0.64743	48.668	48.117	48.764	0.066795					33	17	3	0	0	0	0.024427	1	4848	4848		42.396	3.1433	1	490000	+		75983	21441	52949	53037	83761	83761					0.02623957329183213
SRIPPIVK	8	Unmodified	_SRIPPIVK_					0	0	0			REV__nc|ENSG00000133119|P40938-2|RFC3	REV__nc|ENSG00000133119|P40938-2|RFC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.26318359375	2	455.297645	908.580737	0.45899	0.00020898	-0.55344	-0.00025198	-0.094448	-4.3002E-05	455.297280924212	63.627	0.67207	63.369	63.041	63.713	-0.25824					32	17	3	0	0	0	0.027866	1	7213	7213		39.253	8.7492	1	490340	+		75984	23354	52950	53038	83762	83762					0.12278958410763607
SRIPPLAK	8	Unmodified	_SRIPPLAK_					0	0	0		ENST00000483089.5_1_7:99070565-99075929:+|nuORF;ENST00000468705.1_1_7:99073929-99077448:+|nuORF;ENST00000488485.5_1_7:99070565-99077448:+|nuORF	ENST00000483089.5_1_7:99070565-99075929:+|nuORF	ENST00000483089.5_1_7:99070565-99075929:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2452392578125	2	441.281995	880.549437	-0.20812	-9.1838E-05	0.38253	0.00016881	0.17442	7.6967E-05	441.2820121626791	32.076	0.54894	32.139	31.879	32.428	0.062885					31	13	3	0	0	0	0.027866	1	2168	2168		40.778	0.20554	1	427880			75985	14880	52951	53039	83763	83763					0.10438385376664883
SRIPTPPGP	9	Unmodified	_SRIPTPPGP_					0	0	0			REV__nc|ENSG00000134222|Q6PGN9|PSRC1	REV__nc|ENSG00000134222|Q6PGN9|PSRC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.2793884277344	2	461.261259	920.507966	0.355	0.00016375	-0.47377	-0.00021853	-0.11877	-5.4782E-05	461.26086074550625	42.273	1.0703	42.273	41.825	42.895	0					53	30	3	0	0	0	0.023181	1	3958	3958		60.972	0	1	689210	+		75986	36677	52952	53040	83764	83764					0.0445320461733445
SRIQNMLGN	9	Unmodified	_SRIQNMLGN_					0	0	0		ENST00000504956.5_1_4:87856214-87968836:+|nuORF;nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	ENST00000504956.5_1_4:87856214-87968836:+|nuORF	ENST00000504956.5_1_4:87856214-87968836:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.28564453125	2	516.766383	1031.51821	-0.56095	-0.00028988	-0.8257	-0.0004267	-1.3867	-0.00071658	516.7660608631913	50.453	0.65569	50.534	50.054	50.71	0.080994					34	19	3	0	0	0	0.024397	1	5239	5239		18.262	0.89712	1	649770			75987	8283	52953	53041	83765	83765					0.003714442802447593
SRIRRKRE	8	Unmodified	_SRIRRKRE_					0	0	0			REV__ENST00000527399.3_1_12:122999727-123005058:-|nuORF	REV__ENST00000527399.3_1_12:122999727-123005058:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2982788085938	2	550.841605	1099.66866	0.6226	0.00034295	1.0598	0.00058381	1.6824	0.00092676	550.8420216006974	54.905	0.47271	54.698	54.468	54.941	-0.20613					27	12	3	0	0	0	0.027866	1	5813	5813		45.952	1.8352	1	426280	+		75988	21889	52954	53042	83766	83766					0.1228097205407721
SRISHAFEEAF	11	Unmodified	_SRISHAFEEAF_					0	0	0			REV__ENSG00000136051|ENST00000332180|WASHC4	REV__ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.28271484375	3	431.878926	1292.61495	0.073546	3.1763E-05	-3.5999	-0.0015547	-3.5264	-0.001523	431.87728380466666	52.186	0.40637	52.038	51.881	52.287	-0.14735					19	10	3	0	0	0	0.024747	1	5531	5531		26.75	0	1	125700	+		75989	23619	52955	53043	83767	83767					-0.01965289958957328
SRISLHLT	8	Unmodified	_SRISLHLT_					0	0	0			REV__ENST00000578396.1_1_18:46902050-46905018:-|nuORF	REV__ENST00000578396.1_1_18:46902050-46905018:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2665710449219	2	463.774534	925.534515	-0.20875	-9.6814E-05	0.98195	0.0004554	0.7732	0.00035859	463.77496088879343	42.819	0.39602	42.819	42.642	43.038	0					19	10	3	0	0	0	0.027866	1	3964	3964		29.15	0	1	373390	+		75990	35491	52956	53044	83768	83768					0.06876893508649573
SRIVCLCRS	9	Unmodified	_SRIVCLCRS_					0	0	0		ENST00000478344.6_1_9:140240296-140248823:-|nuORF	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	ENST00000478344.6_1_9:140240296-140248823:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.79296875	2	518.773154	1035.53175	-0.15439	-8.0095E-05	3.9815	0.0020655	3.8271	0.0019854	519.2764595447327	64.253	0.4351	63.998	63.795	64.23	-0.25563					15	10	2	0	0	0	0.024427	1	7288	7288		34.173	8.5985	1	517440			75991	15143	52957	53045	83769	83769					0.01540978787829772
SRKDALLV	8	Unmodified	_SRKDALLV_					0	0	0			REV__TBC1D25|p.E153D|1|0.08|ENSG00000068354|chrX:48558967-48558967|G/C|missense_variant	REV__TBC1D25|p.E153D|1|0.08|ENSG00000068354|chrX:48558967-48558967|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.80328369140625	2	451.276909	900.539266	1.197	0.00054019	1.1341	0.00051179	2.3311	0.001052	451.2761679427391	18.182	0.49281	18.026	17.655	18.148	-0.15637					21	9	4	0	0	0	0.027866	1	246	246		18.324	0	1	70374	+		75992	37678	52958	53046	83770	83770					0.08501777651429165
SRKESSLLIT	10	Unmodified	_SRKESSLLIT_					0	0	0			REV__nc|ENSG00000134755|Q02487-2|DSC2	REV__nc|ENSG00000134755|Q02487-2|DSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	566.766845703125	2	567.32987	1132.64519	0.49026	0.00027814	-3.239	-0.0018376	-2.7487	-0.0015594	567.3277011228099	40.875	0.78404	40.752	40.51	41.294	-0.12317					41	21	3	0	0	0	0.03519	1	3637	3637		52.937	22.433	1	587570	+		75993	23475	52959	53047	83771	83771					0.08417068706262398
SRKEVRKTK	9	Unmodified	_SRKEVRKTK_					0	0	0			REV__ENSG00000198785|ENST00000361820|GRIN3A	REV__ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.7669067382812	2	566.351471	1130.68839	-0.87653	-0.00049643	-2.0985	-0.0011885	-2.975	-0.0016849	566.3498352695013	41.15	0.34804	40.92	40.809	41.157	-0.2303					15	8	2	0	0	0	0.024427	1	3589	3589		26.693	0	1	128770	+		75994	28474	52960	53048	83772	83772					0.12827303274184487
SRKGDRTV	8	Unmodified	_SRKGDRTV_					0	0	0			REV__ENSG00000164024|ENST00000296411|METAP1	REV__ENSG00000164024|ENST00000296411|METAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.24151611328125	2	459.759415	917.504277	0.95965	0.00044121	1.0962	0.000504	2.0559	0.00094521	459.7601450076452	85.884	0.63103	85.884	85.626	86.257	0					32	14	4	0	0	0	0.027866	1	10781	10781		19.104	0	1	415430	+		75995	25671	52961	53049	83773	83773					0.04222534843484027
SRKGMIIL	8	Unmodified	_SRKGMIIL_					0	0	0			REV__SPATA6-FAF1|1|fusion	REV__SPATA6-FAF1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.26824951171875	2	459.28368	916.552807	0.56522	0.0002596	2.9484	0.0013541	3.5136	0.0016137	459.28449329473057	75.325	0.26735	75.336	75.132	75.399	0.010376					9	6	3	0	0	0	0.027866	1	9165	9165		12.959	0	1	218850	+		75996	27735	52962	53050	83774	83774					0.09119312159020865
SRKGRIYY	8	Unmodified	_SRKGRIYY_					0	0	0		ENST00000335500.8_1_17:42516078-42541999:-|nuORF	ENST00000335500.8_1_17:42516078-42541999:-|nuORF	ENST00000335500.8_1_17:42516078-42541999:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.3323364257812	2	521.793258	1041.57196	-0.69051	-0.0003603	2.0043	0.0010458	1.3138	0.00068553	521.7941982630325	39.481	0.49018	39.316	39.008	39.498	-0.16458					19	12	2	0	0	0	0.027866	1	3355	3355		18.324	0	1	347250			75997	12392	52963	53051	83775	83775					0.05283984774268902
SRKGRKKG	8	Unmodified	_SRKGRKKG_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.7640075683594	2	458.793592	915.572632	1.9902	0.00091308	1.1725	0.00053794	3.1627	0.001451	458.7940252610539	23.918	0.4426	23.737	23.495	23.938	-0.18089					13	9	2	0	0	0	0.027866	1	941	941		18.324	0	1	61247	+		75998	22385	52964	53052	83776	83776					0.11146824213994933
SRKGSALTF	9	Unmodified	_SRKGSALTF_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14;nc|ENSG00000146826|Q8WVR3-2|TRAPPC14;ENST00000448720.5_1_7:99752636-99754020:-|nuORF;nc|ENSG00000146826|Q8WVR3-3|TRAPPC14;ENST00000394035.6_2_7:99752636-99754020:-|nuORF	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2569885253906	2	483.771991	965.529429	-1.1224	-0.00054299	0.95411	0.00046157	-0.16829	-8.1415E-05	483.7723024779295	35.955	1.3607	35.913	35.488	36.849	-0.042454					56	36	2	0	0	0	0.024506	1	2930	2930		38.806	22.333	1	1446700			75999	5909	52965	53053	83777	83777					0.045285896460427466
SRKGSALTF	9	Unmodified	_SRKGSALTF_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14;nc|ENSG00000146826|Q8WVR3-2|TRAPPC14;ENST00000448720.5_1_7:99752636-99754020:-|nuORF;nc|ENSG00000146826|Q8WVR3-3|TRAPPC14;ENST00000394035.6_2_7:99752636-99754020:-|nuORF	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2569885253906	2	483.771991	965.529429	-0.56	-0.00027091	-0.37848	-0.0001831	-0.93848	-0.00045401	483.77147222791865	36.799	0.45662	36.837	36.545	37.002	0.038044					14	11	2	0	0	0	0.024506	1	2920	2920		30.504	0	1	72487			76000	5909	52965	53053	83778	83778					0.045285896460427466
SRKGSALTF	9	Unmodified	_SRKGSALTF_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14;nc|ENSG00000146826|Q8WVR3-2|TRAPPC14;ENST00000448720.5_1_7:99752636-99754020:-|nuORF;nc|ENSG00000146826|Q8WVR3-3|TRAPPC14;ENST00000394035.6_2_7:99752636-99754020:-|nuORF	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.771991	965.529429	-0.9487	-0.00045896	0.84665	0.00040958	-0.10206	-4.9372E-05	483.7722480702201	36.074	0.99742	36.074	35.687	36.685	0	0.051241	5.2193E-05	NaN	44.117	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1486100			76001	5909	52965	53053							0.045285896460427466
SRKGSALTF	9	Unmodified	_SRKGSALTF_					0	0	0		ENSG00000146826|ENST00000316937|TRAPPC14;nc|ENSG00000146826|Q8WVR3-2|TRAPPC14;ENST00000448720.5_1_7:99752636-99754020:-|nuORF;nc|ENSG00000146826|Q8WVR3-3|TRAPPC14;ENST00000394035.6_2_7:99752636-99754020:-|nuORF	ENSG00000146826|ENST00000316937|TRAPPC14	ENSG00000146826|ENST00000316937|TRAPPC14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.771991	965.529429	-0.74881	-0.00036225	0.54824	0.00026522	-0.20057	-9.7031E-05	483.7721166798364	36.044	1.0696	36.082	35.652	36.721	0.038044	0.05915	-0.00023653	NaN	44.117	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1480700			76002	5909	52965	53053							0.045285896460427466
SRKGVKNN	8	Unmodified	_SRKGVKNN_					0	0	0		ENST00000237530.10_1_20:35869751-35869895:+|nuORF	ENST00000237530.10_1_20:35869751-35869895:+|nuORF	ENST00000237530.10_1_20:35869751-35869895:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.7759704589844	2	451.761958	901.509363	-1.0088	-0.00045574	-3.5294	-0.0015945	-4.5382	-0.0020502	451.76003227837487	44.39	0.91903	44.171	43.788	44.707	-0.21939					35	24	2	0	0	0	0.027866	1	4117	4117		54.776	24.935	1	189130			76003	11259	52966	53054	83779	83779					0.054668387060814894
SRKHLWPV	8	Unmodified	_SRKHLWPV_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR;ENSG00000164327|ENST00000357387|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2561950683594	2	511.798343	1021.58213	-1.409	-0.00072112	-0.61651	-0.00031553	-2.0255	-0.0010366	511.7976873814647	38.182	0.4304	38.182	38.003	38.433	0					17	12	2	0	0	0	0.027866	1	3155	3155		30.504	1.3541	1	536390			76004	18456	52967	53055	83780	83780					0.07220592499504619
SRKHPELID	9	Unmodified	_SRKHPELID_					0	0	0		ENST00000460338.5_1_13:103436847-103443499:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103436847-103443499:-|nuORF	ENST00000460338.5_1_13:103436847-103443499:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3275146484375	2	547.80128	1093.58801	-0.49655	-0.00027201	-0.20563	-0.00011265	-0.70218	-0.00038466	548.3037091204665	29.437	0.67352	29.288	28.869	29.542	-0.14952					39	15	4	0	0	0	0.024209	1	1753	1753		47.657	0	1	401560			76005	4842	52968	53056	83781	83781					0.044956462205163916
SRKIFRKS	8	Unmodified	_SRKIFRKS_					0	0	0		nc|ENSG00000152592|Q13316-2|DMP1;ENSG00000152592|ENST00000339673|DMP1	nc|ENSG00000152592|Q13316-2|DMP1	nc|ENSG00000152592|Q13316-2|DMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2507019042969	2	511.3169	1020.61925	-0.24672	-0.00012615	-3.6686	-0.0018758	-3.9153	-0.002002	511.3148790711023	47.145	0.63711	46.951	46.779	47.416	-0.19387					38	16	3	0	0	0	0.027866	1	4578	4578		19.997	4.355	1	305690			76006	6285	52969	53057	83782	83782					0.10976264045280004
SRKKAPTGV	9	Unmodified	_SRKKAPTGV_					0	0	0			REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.79095458984375	2	472.287808	942.561064	0.033725	1.5928E-05	-0.81582	-0.0003853	-0.7821	-0.00036938	472.2871731548567	25.895	0.42977	25.895	25.694	26.124	0					19	9	3	0	0	0	0.024418	1	1245	1245		30.318	15.453	1	153110	+		76007	34729	52970	53058	83783	83783					0.08748582400005489
SRKKAPTGV	9	Unmodified	_SRKKAPTGV_					0	0	0			REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	REV__ENST00000539135.1_1_12:4358286-4385349:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.287808	942.561064	-0.091961	-4.3432E-05	-0.64236	-0.00030338	-0.73432	-0.00034681	472.28725622632106	25.969	0.95898	25.946	25.693	26.652	-0.023088	0.035274	0.00039904	NaN	17.468	34	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152710	+		76008	34729	52970	53058							0.08748582400005489
SRKKGISIN	9	Unmodified	_SRKKGISIN_					0	0	0		ENST00000431807.6_1_2:197584347-197586267:+|nuORF	ENST00000431807.6_1_2:197584347-197586267:+|nuORF	ENST00000431807.6_1_2:197584347-197586267:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8175964355469	2	501.806365	1001.59818	0.12715	6.3804E-05	-0.79064	-0.00039675	-0.66349	-0.00033294	502.3070635479363	93.624	0.94102	93.624	93.303	94.244	0					27	22	2	0	0	0	0.024344	1	11939	11939		45.972	14.442	1	174830			76009	14190	52971	53059	83784	83784					0.09744253945757464
SRKKKKDDM	9	Unmodified	_SRKKKKDDM_					0	0	0			REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B	REV__nc|ENSG00000160050|Q9BUN5-3|CCDC28B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3309326171875	2	568.31624	1134.61793	-0.80663	-0.00045842	0.68237	0.0003878	-0.12427	-7.0623E-05	568.3167143394319	94.103	0.50653	93.965	93.746	94.253	-0.13779					17	11	2	0	0	0	0.024511	1	11567	11567		13.454	0	1	77925	+		76010	25287	52972	53060	83785	83785					0.05600261894187497
SRKKKKKK	8	Unmodified	_SRKKKKKK_					0	0	0		AluSc_dup13832|chr7:33006087-33006413:-|2.660605299313354|0.4159080058002372|2.68|521.0|10|3|sense	AluSc_dup13832|chr7:33006087-33006413:-|2.660605299313354|0.4159080058002372|2.68|521.0|10|3|sense	AluSc_dup13832|chr7:33006087-33006413:-|2.660605299313354|0.4159080058002372|2.68|521.0|10|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2818603515625	2	515.864018	1029.71348	-0.71683	-0.00036979	-0.35611	-0.0001837	-1.0729	-0.00055349	515.8642820840907	65.234	0.10126	65.272	65.187	65.288	0.037384					4	2	2	0	0	0	0.027866	1	7625	7625		0	0	1	67142			76011	71	52973	53061	83786	83786					0.19981402867415454
SRKKKPPVS	9	Unmodified	_SRKKKPPVS_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.79052734375	2	513.824558	1025.63456	-0.66413	-0.00034124	0.33692	0.00017312	-0.3272	-0.00016812	513.8243848457458	43.57	0.72143	43.333	42.879	43.6	-0.23736					28	19	2	0	0	0	0.024477	1	3972	3972		27.882	7.4004	1	276740			76012	9758	52974	53062	83787	83787					0.12277130842471706
SRKKKPPVS	9	Unmodified	_SRKKKPPVS_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.7897338867188	2	513.824558	1025.63456	-0.87408	-0.00044912	0.11287	5.7996E-05	-0.76121	-0.00039113	513.8243617511582	43.611	0.7154	43.391	42.919	43.634	-0.21938					27	19	2	0	0	0	0.024477	1	3971	3971		27.882	0	1	285520			76013	9758	52974	53062	83788	83788					0.12277130842471706
SRKKNKPL	8	Unmodified	_SRKKNKPL_					0	0	0			REV__ENSG00000136492|ENST00000259008|BRIP1	REV__ENSG00000136492|ENST00000259008|BRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.8114929199219	2	485.811451	969.608348	-0.42027	-0.00020417	0.50753	0.00024657	0.087258	4.2391E-05	485.8115393994058	42.319	0.80231	42.087	41.803	42.605	-0.23186					55	21	4	0	0	0	0.87148	1	3791	3791		53.351	2.016	1	2536700	+		76014	23660	52975	53063	83789	83789					0.12232861670997863
SRKKNLSIN	9	Unmodified	_SRKKNLSIN_					0	0	0			REV__ENST00000371108.8_1_1:63836517-63836580:+|nuORF	REV__ENST00000371108.8_1_1:63836517-63836580:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2824096679688	2	530.317097	1058.61964	-0.21719	-0.00011518	1.6829	0.00089248	1.4657	0.0007773	530.317615307445	56.418	0.54755	56.202	55.881	56.429	-0.21607					18	13	2	0	0	0	0.024541	1	6069	6069		14.137	4.9542	1	118360	+		76015	31149	52976	53064	83790	83790					0.09267638974483816
SRKKNLSIN	9	Unmodified	_SRKKNLSIN_					0	0	0			REV__ENST00000371108.8_1_1:63836517-63836580:+|nuORF	REV__ENST00000371108.8_1_1:63836517-63836580:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.317097	1058.61964	-0.8208	-0.00043528	2.4329	0.0012902	1.6121	0.00085491	530.3178293324802	56.38	0.40001	56.216	56.024	56.424	-0.16342	0.0073512	0.00032641	NaN	29.17	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57971	+		76016	31149	52976	53064							0.09267638974483816
SRKKQKEV	8	Unmodified	_SRKKQKEV_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.290771484375	2	501.806365	1001.59818	1.5862	0.00079595	2.0764	0.0010419	3.6625	0.0018379	501.8074103115786	23.915	0.72553	23.734	23.258	23.983	-0.18089					32	16	3	0	0	0	0.027866	1	979	979		49.442	0	1	210790			76017	1119	52977	53065	83791	83791					0.09744253945757464
SRKKQSEV	8	Unmodified	_SRKKQSEV_					0	0	0			REV__nc|ENSG00000172794|Q96AX2-2|RAB37	REV__nc|ENSG00000172794|Q96AX2-2|RAB37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.29205322265625	2	481.274898	960.535243	0.024341	1.1715E-05	-3.9683	-0.0019099	-3.944	-0.0018981	481.27288919062005	31.941	1.0242	31.756	31.48	32.504	-0.18503					35	23	2	0	0	0	0.027866	1	2134	2134		27.882	0	1	522140	+		76018	36944	52978	53066	83792	83792					0.05339688157721412
SRKKRQYVF	9	Unmodified	_SRKKRQYVF_					0	0	0			REV__ENST00000373790.8_1_X:70608617-70608695:+|nuORF	REV__ENST00000373790.8_1_X:70608617-70608695:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.2012023925781	3	404.571768	1210.69348	1.2795	0.00051765	-1.1514	-0.00046581	0.12814	5.1842E-05	404.5712987755108	20.95	0.97989	20.754	20.435	21.415	-0.19577					35	19	2	0	0	0	0.024456	1	586	586		42.864	16.801	1	802240	+		76019	31271	52979	53067	83793	83793					0.09655607136778599
SRKLEKYN	8	Unmodified	_SRKLEKYN_					0	0	0			REV__nc|ENSG00000106052|Q86VP1-2|TAX1BP1	REV__nc|ENSG00000106052|Q86VP1-2|TAX1BP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8187866210938	2	519.290548	1036.56654	0.44203	0.00022954	-4.2705	-0.0022176	-3.8285	-0.0019881	519.2882067135469	72.119	0.6077	71.833	71.69	72.298	-0.28638					24	15	2	0	0	0	0.027866	1	8717	8717		27.882	15.675	1	132020	+		76020	21591	52980	53068	83794	83794					0.049722611918241455
SRKLHIKLM	9	Unmodified	_SRKLHIKLM_					0	0	0			REV__ENST00000367393.7_2_1:197874941-197876372:+|nuORF	REV__ENST00000367393.7_2_1:197874941-197876372:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.2658081054688	2	563.349886	1124.68522	-0.55729	-0.00031395	-4.1786	-0.002354	-4.7359	-0.0026679	563.3475862178399	73.036	0.33492	72.838	72.625	72.96	-0.1981					10	7	2	0	0	0	0.02435	1	8577	8577		42.396	20.436	1	81888	+		76021	31018	52981	53069	83795	83795					0.12786336895806016
SRKLHIKLM	9	Unmodified	_SRKLHIKLM_					0	0	0			REV__ENST00000367393.7_2_1:197874941-197876372:+|nuORF	REV__ENST00000367393.7_2_1:197874941-197876372:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	563.349886	1124.68522	-0.63593	-0.00035825	-3.9692	-0.0022361	-4.6052	-0.0025943	563.347501744688	72.903	0.52587	72.903	72.656	73.182	0	-0.02602	0.00024335	NaN	19.997	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610100	+		76022	31018	52981	53069							0.12786336895806016
SRKLHIKLM	9	Unmodified	_SRKLHIKLM_					0	0	0			REV__ENST00000367393.7_2_1:197874941-197876372:+|nuORF	REV__ENST00000367393.7_2_1:197874941-197876372:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.349886	1124.68522	-0.25372	-0.00014293	-4.331	-0.0024399	-4.5847	-0.0025828	563.3473346296772	73.285	0.58804	73.013	72.76	73.348	-0.27126	0.08405	-0.00016426	NaN	19.997	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712760	+		76023	31018	52981	53069							0.12786336895806016
SRKLLPSV	8	Unmodified	_SRKLLPSV_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|262|2|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|262|2|anti-sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|262|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2508850097656	2	450.287277	898.560001	-0.4264	-0.000192	0.56774	0.00025565	0.14134	6.3643E-05	450.2873165107308	32.825	0.63388	32.831	32.589	33.223	0.0066223					37	16	3	0	0	0	0.027866	1	2319	2319		60.972	0	1	1520100			76024	17729	52982	53070	83796	83796					0.10666368031093043
SRKLPQYK	8	Unmodified	_SRKLPQYK_					0	0	0			REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2561950683594	2	510.303458	1018.59236	-1.4471	-0.00073846	0.34331	0.00017519	-1.1038	-0.00056327	510.3031477170951	38.132	0.58581	38.132	37.969	38.555	0					25	16	3	0	0	0	0.027866	1	3155	3155		29.15	6.1071	1	802000	+		76025	27873	52983	53071	83797	83797					0.08381155434085485
SRKMAELEE	9	Unmodified	_SRKMAELEE_					0	0	0		nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	nc|ENSG00000100813|Q9UKV3-5|ACIN1	nc|ENSG00000100813|Q9UKV3-5|ACIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.8241577148438	2	546.771331	1091.52811	-0.72477	-0.00039629	2.1273	0.0011631	1.4025	0.00076684	547.2735453753846	41.594	0.1977	41.364	41.274	41.472	-0.23029					6	4	2	0	0	0	0.023274	1	3672	3672		58.23	8.7884	1	45570			76026	18128	52984	53072	83798	83798					-0.013994125050203365
SRKMEEKY	8	Unmodified	_SRKMEEKY_					0	0	0		nc|ENSG00000147257|P51654-3|GPC3;ENSG00000147257|ENST00000370818|GPC3	nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7666015625	2	535.768591	1069.52263	-0.6613	-0.00035431	-2.9921	-0.0016031	-3.6534	-0.0019574	535.7668581103388	30.427	1.7055	30.183	29.737	31.443	-0.24415					130	41	5	0	0	0	0.50717	2	1968	1968;1980		84.916	10.751	1	3884100			76027	18362	52985	53073	83799;83800	83799					-0.009350912968329794
SRKMEEKY	8	Unmodified	_SRKMEEKY_					0	0	0		nc|ENSG00000147257|P51654-3|GPC3;ENSG00000147257|ENST00000370818|GPC3	nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-3|GPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7669067382812	2	535.768591	1069.52263	-0.6583	-0.0003527	-3.0124	-0.0016139	-3.6707	-0.0019666	535.7668438126454	30.316	1.3717	30.167	29.792	31.164	-0.14952					111	32	5	0	0	0	0.62178	1	1895	1895		74.255	10.949	1	3364100			76028	18362	52985	53073	83801	83801					-0.009350912968329794
SRKMFCKKS	9	Unmodified	_SRKMFCKKS_					0	0	0		nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1;nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	nc|ENSG00000124535|Q96S55-2|WRNIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3245239257812	2	557.796629	1113.5787	-0.88213	-0.00049205	-1.3652	-0.00076151	-2.2473	-0.0012536	557.7956423784665	38.461	0.23734	38.379	38.254	38.492	-0.082512					9	5	2	0	0	0	0.024397	1	3226	3226		24.519	0	1	34680			76029	4057	52986	53074	83802	83802					0.026458383390036033
SRKNPLQGK	9	Unmodified	_SRKNPLQGK_					0	0	0		ENST00000464350.6_1_3:66430772-66430979:+|nuORF	ENST00000464350.6_1_3:66430772-66430979:+|nuORF	ENST00000464350.6_1_3:66430772-66430979:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2608032226562	2	514.30399	1026.59343	-0.59694	-0.00030701	0.24045	0.00012366	-0.35649	-0.00018334	514.3039714957284	30.267	0.58161	30.275	30.042	30.624	0.0086708					28	12	3	0	0	0	0.024405	1	1891	1891		35.618	2.8059	1	326600			76030	14761	52987	53075	83803	83803					0.08119369803011978
SRKPGDPLVI	10	Unmodified	_SRKPGDPLVI_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.3223876953125	2	541.321848	1080.62914	-0.13686	-7.4083E-05	-0.92614	-0.00050134	-1.063	-0.00057542	541.3213201709734	60.049	2.0846	60.049	59.482	61.566	0					150	55	4	0	0	0	0.66532	2	6889	6878;6889		69.628	6.7668	1	27771000			76031	6504	52988	53076	83804;83805	83805					0.09205407259992171
SRKPGDPLVI	10	Unmodified	_SRKPGDPLVI_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3222045898438	2	541.321848	1080.62914	-0.98465	-0.00053301	-0.086361	-4.6749E-05	-1.071	-0.00057976	541.3217675287749	60.274	2.0855	60.073	59.356	61.442	-0.2004					144	55	4	0	0	0	0.61732	1	6886	6886		75.043	14.749	1	23185000			76032	6504	52988	53076	83806	83806					0.09205407259992171
SRKREAPL	8	Unmodified	_SRKREAPL_					0	0	0		SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|2|1|sense	SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|2|1|sense	SVA_E_dup408|chr10:31969059-31970051:+|3.041789173361242|0.275459818795955|3.47|521.0|2|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7436218261719	2	478.785433	955.556313	-0.64964	-0.00031104	0.31972	0.00015308	-0.32992	-0.00015796	478.7854981351031	29.467	0.59868	29.545	29.284	29.883	0.078344					26	14	2	0	0	0	0.027866	1	1800	1800		38.806	5.9937	1	516440			76033	38032	52989	53077	83807	83807					0.07675698257230579
SRKRGGPVM	9	Unmodified	_SRKRGGPVM_					0	0	0			REV__ENST00000357058.7_1_9:36400701-36400785:-|nuORF	REV__ENST00000357058.7_1_9:36400701-36400785:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.2873229980469	2	494.27946	986.544368	-0.48818	-0.0002413	-4.1598	-0.0020561	-4.648	-0.0022974	494.2777298927399	22.686	0.54881	22.5	22.236	22.784	-0.18539					19	11	3	0	0	0	0.024427	1	807	807		26.693	0	1	668240	+		76034	30814	52990	53078	83808	83808					0.050557582424062275
SRKRKLQG	8	Unmodified	_SRKRKLQG_					0	0	0		nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341|ENST00000264233|POLQ	nc|ENSG00000051341|O75417-2|POLQ	nc|ENSG00000051341|O75417-2|POLQ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.29052734375	2	486.8067	971.598846	-0.69844	-0.00034	-2.2842	-0.001112	-2.9826	-0.001452	486.8057382929808	27.599	0.56886	27.599	27.544	28.113	0					18	14	2	0	0	0	0.027866	1	1554	1554		12.207	0	1	71978			76035	1146	52991	53079	83809	83809					0.11191093385468776
SRKRLMSKVL	10	Unmodified	_SRKRLMSKVL_					0	0	0			REV__nc|ENSG00000004660|Q8N5S9-2|CAMKK1	REV__nc|ENSG00000004660|Q8N5S9-2|CAMKK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.18310546875	3	406.588542	1216.7438	0.090545	3.6815E-05	-3.0395	-0.0012358	-2.949	-0.001199	406.58713233865905	28.886	1.0257	28.717	28.048	29.073	-0.16897					36	23	2	0	0	0	0.03519	1	1627	1627		8.0344	0	1	53735	+		76036	19781	52992	53080	83810	83810					0.14409393470305076
SRKRQEPP	8	Unmodified	_SRKRQEPP_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.8027648925781	2	499.280515	996.546476	-0.01991	-9.9406E-06	2.7509	0.0013734	2.7309	0.0013635	499.28121330300644	52.349	0.85314	52.441	52.16	53.013	0.091938					28	21	2	0	0	0	0.027866	1	5586	5586		55.504	27.622	1	336900	+		76037	24238	52993	53081	83811	83811					0.04806510251853524
SRKRSWGH	8	Unmodified	_SRKRSWGH_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2274169921875	2	507.273024	1012.5315	-0.97872	-0.00049648	-0.7568	-0.0003839	-1.7355	-0.00088038	507.2729175897959	30.047	0.42764	29.869	29.655	30.083	-0.17818					15	9	3	0	0	0	0.027866	1	1913	1913		19.997	0	1	99161			76038	9561	52994	53082	83812	83812					0.025730631745204846
SRKRSWGH	8	Unmodified	_SRKRSWGH_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.273024	1012.5315	-0.40078	-0.0002033	-0.16902	-8.5739E-05	-0.5698	-0.00028904	507.27273942956054	30.143	0.46677	29.898	29.655	30.122	-0.24415	0.018332	0.00049144	NaN	14.137	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93382			76039	9561	52994	53082							0.025730631745204846
SRKSRSASQL	10	Unmodified	_SRKSRSASQL_					0	0	0		RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;ENSG00000176406|ENST00000696799|RIMS2	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.7828979492188	2	560.315086	1118.61562	-0.29428	-0.00016489	-3.4271	-0.0019202	-3.7213	-0.0020851	560.3130031141343	31.511	0.69039	31.27	30.875	31.565	-0.24109					30	17	2	0	0	0	0.03519	1	2052	2052		30.318	3.6248	1	79213			76040	8637	52995	53083	83813	83813					0.06105549480753325
SRKSRSASQL	10	Unmodified	_SRKSRSASQL_					0	0	0		RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant;ENSG00000176406|ENST00000696799|RIMS2	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.315086	1118.61562	-0.59622	-0.00033407	-2.8642	-0.0016048	-3.4604	-0.0019389	560.3133633105673	31.487	0.56768	31.335	31.006	31.574	-0.15231	0.038692	0.00023947	NaN	37.812	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94328			76041	8637	52995	53083							0.06105549480753325
SRKTKITAIA	10	Unmodified	_SRKTKITAIA_					0	0	0			REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.8211059570312	2	544.842948	1087.67134	-0.54906	-0.00029915	-1.5437	-0.00084109	-2.0928	-0.0011402	544.8420594143935	63.863	0.24862	63.612	63.553	63.802	-0.25141					12	6	3	0	0	0	0.03519	1	7470	7470		14.137	0	1	344730	+		76042	34543	52996	53084	83814	83814					0.13101382668355654
SRLAEAPIP	9	Unmodified	_SRLAEAPIP_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.29266357421875	2	477.274367	952.53418	-0.34928	-0.0001667	0.65684	0.00031349	0.30755	0.00014679	477.2745436345215	47.01	0.62275	47.069	46.766	47.389	0.059097					25	16	2	0	0	0	0.024457	1	4583	4583		21.96	0	1	356060	+		76043	26783	52997	53085	83815	83815					0.056014737887949195
SRLAHPSL	8	Unmodified	_SRLAHPSL_					0	0	0			REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2452392578125	2	440.753601	879.49265	-0.064033	-2.8223E-05	1.5143	0.00066743	1.4503	0.0006392	440.7536476928958	32.293	0.84443	32.356	31.961	32.806	0.062885					34	21	3	0	0	0	0.027866	1	2168	2168		21.96	3.6355	1	279400	+		76044	30696	52998	53086	83816	83816					0.048083378201340565
SRLAHPSL	8	Unmodified	_SRLAHPSL_					0	0	0			REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	440.753601	879.49265	-0.3992	-0.00017595	0.53383	0.00023529	0.13463	5.9338E-05	440.7537935604436	32.598	0.7933	32.598	32.186	32.979	0	0.19072	0.00015647	NaN	19.997	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257100	+		76045	30696	52998	53086							0.048083378201340565
SRLAHPSL	8	Unmodified	_SRLAHPSL_					0	0	0			REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	440.753601	879.49265	0.27288	0.00012027	-2.7692	-0.0012206	-2.4964	-0.0011003	440.7537529860323	32.36	0.22025	32.167	32.029	32.249	-0.19261	-0.23939	-0.0027552	NaN	19.997	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10936	+		76046	30696	52998	53086							0.048083378201340565
SRLAKKKW	8	Unmodified	_SRLAKKKW_					0	0	0			REV__nc|ENSG00000117090|Q13291-4|SLAMF1	REV__nc|ENSG00000117090|Q13291-4|SLAMF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2691650390625	2	508.821818	1015.62908	-0.8813	-0.00044842	-2.0227	-0.0010292	-2.904	-0.0014776	508.8207650400089	44.822	0.31172	44.723	44.594	44.906	-0.099445					12	7	2	0	0	0	0.027866	1	4200	4200		34.173	0	1	135520	+		76047	36596	52999	53087	83817	83817					0.12189452050654381
SRLALRLP	8	Unmodified	_SRLALRLP_					0	0	0		ENST00000413817.7_2_22:50754827-50757307:-|nuORF	ENST00000413817.7_2_22:50754827-50757307:-|nuORF	ENST00000413817.7_2_22:50754827-50757307:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.26690673828125	2	463.300719	924.586885	-0.21953	-0.00010171	-0.00032322	-1.4975E-07	-0.21986	-0.00010186	463.300768279373	43.186	0.87153	43.047	42.631	43.503	-0.13929					50	23	3	0	0	0	0.027866	1	3947	3947		21.96	9.753	1	601580			76048	13851	53000	53088	83818	83818					0.12157476642266829
SRLALRLP	8	Unmodified	_SRLALRLP_					0	0	0		ENST00000413817.7_2_22:50754827-50757307:-|nuORF	ENST00000413817.7_2_22:50754827-50757307:-|nuORF	ENST00000413817.7_2_22:50754827-50757307:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2670593261719	2	463.300719	924.586885	0.99734	0.00046207	-1.0176	-0.00047146	-0.020283	-9.3972E-06	463.3001551450546	43.152	0.72759	43.183	42.83	43.558	0.030827					44	19	4	0	0	0	0.027866	1	3906	3906		35.618	5.1146	1	538740			76049	13851	53000	53088	83819	83819					0.12157476642266829
SRLANRAPEPT	11	Unmodified	_SRLANRAPEPT_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000535717.1_1_12:6679844-6680280:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5110778808594	3	404.554554	1210.64183	0.73026	0.00029543	1.948	0.00078809	2.6783	0.0010835	404.55523184894616	31.736	0.58077	31.551	31.283	31.864	-0.18503					39	13	4	0	0	0	0.024741	1	2170	2170		34.501	6.1171	1	300910			76050	3129	53001	53089	83820	83820					0.04493818652235859
SRLAPLLLL	9	Unmodified	_SRLAPLLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3342590332031	2	498.334227	994.653902	0.4612	0.00022983	-0.92052	-0.00045872	-0.45932	-0.00022889	498.33365604942816	74.84	1.0355	74.84	74.551	75.586	0					79	26	4	0	0	0	0.33245	1	9156	9156		71.296	0	1	5041300	+		76051	21996	53002	53090	83821	83821					0.15636087133384535
SRLAPLLLL	9	Unmodified	_SRLAPLLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2562561035156	2	498.334227	994.653902	-0.62917	-0.00031354	0.95697	0.00047689	0.32779	0.00016335	498.3346504452199	80.295	1.1836	80.316	80.021	81.205	0.021439					49	28	3	0	0	0	0.024457	1	9890	9890		15.642	0	1	338460	+		76052	21996	53002	53090	83822	83822					0.15636087133384535
SRLARAALF	9	Unmodified	_SRLARAALF_					0	0	0			REV__ENST00000486431.5_1_3:125635511-125647421:+|nuORF	REV__ENST00000486431.5_1_3:125635511-125647421:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7801208496094	2	502.803626	1003.5927	-0.48044	-0.00024157	0.14666	7.3742E-05	-0.33378	-0.00016782	502.8035562641959	24.128	0.30185	24.128	23.951	24.253	0					9	6	2	0	0	0	0.024405	1	1035	1035		27.882	8.5223	1	36543	+		76053	33590	53003	53091	83823	83823					0.09104575153946826
SRLARIAR	8	Unmodified	_SRLARIAR_					0	0	0			REV__ENST00000462934.5_1_7:6449470-6461666:-|nuORF	REV__ENST00000462934.5_1_7:6449470-6461666:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7741394042969	2	471.801417	941.588282	1.0011	0.0004723	1.8412	0.00086866	2.8422	0.001341	471.8021288928246	36.774	0.57257	36.774	36.508	37.081	0					35	14	4	0	0	0	0.027866	1	2978	2978		15.642	0	1	904830	+		76054	32919	53004	53092	83824	83824					0.11515110731045297
SRLAVLQH	8	Unmodified	_SRLAVLQH_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.797119140625	2	462.274701	922.534849	-0.50717	-0.00023445	0.5143	0.00023775	0.0071342	3.298E-06	462.27478806031365	32.688	0.86607	32.7	32.144	33.01	0.011799					38	22	3	0	0	0	0.027866	1	2235	2235		23.042	0	1	653160			76055	5011	53005	53093	83825	83825					0.07048313228528968
SRLDFLKASH	10	Unmodified	_SRLDFLKASH_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	587.2953491210938	2	587.32238	1172.63021	-0.76721	-0.0004506	1.4817	0.00087023	0.71448	0.00041963	587.3229167667977	74.321	0.25749	74.062	73.986	74.244	-0.25887					9	5	3	0	0	0	0.03519	1	9069	9069		18.262	4.125	1	153850			76056	10180	53006	53094	83826	83826					0.05079621628897257
SRLDSLFTV	9	Unmodified	_SRLDSLFTV_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	REV__nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2627563476562	2	519.284931	1036.55531	0.31975	0.00016604	-1.9372	-0.001006	-1.6175	-0.00083992	519.2840538812903	56.153	0.64889	55.937	55.702	56.351	-0.21607					26	16	2	0	0	0	0.024447	1	6071	6071		25.574	10.709	1	313980	+		76057	22799	53007	53095	83827	83827					0.03849439097666618
SRLEPATK	8	Unmodified	_SRLEPATK_					0	0	0			REV__ZNF668|p.A92P|1|0.13|ENSG00000167394|chr16:31064186-31064186|C/G|missense_variant	REV__ZNF668|p.A92P|1|0.13|ENSG00000167394|chr16:31064186-31064186|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2815246582031	2	451.258717	900.50288	0.039371	1.7767E-05	0.33811	0.00015258	0.37748	0.00017034	451.25885987895174	50.427	0.64142	50.508	50.243	50.885	0.080994					27	18	2	0	0	0	0.027866	1	5251	5251		36.447	9.7538	1	341770	+		76058	26138	53008	53096	83828	83828					0.04864900754705559
SRLEPATK	8	Unmodified	_SRLEPATK_					0	0	0			REV__ZNF668|p.A92P|1|0.13|ENSG00000167394|chr16:31064186-31064186|C/G|missense_variant	REV__ZNF668|p.A92P|1|0.13|ENSG00000167394|chr16:31064186-31064186|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.258717	900.50288	-0.034562	-1.5596E-05	0.35697	0.00016109	0.32241	0.00014549	451.25877166000964	50.551	0.33091	50.551	50.376	50.707	0	0.029376	0.00034929	NaN	15.333	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104370	+		76059	26138	53008	53096							0.04864900754705559
SRLEPATK	8	Unmodified	_SRLEPATK_					0	0	0			REV__ZNF668|p.A92P|1|0.13|ENSG00000167394|chr16:31064186-31064186|C/G|missense_variant	REV__ZNF668|p.A92P|1|0.13|ENSG00000167394|chr16:31064186-31064186|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.258717	900.50288	0.12115	5.4669E-05	0.25699	0.00011597	0.37814	0.00017064	451.25878547812056	50.781	0.4699	50.632	50.322	50.792	-0.14916	0.11061	0.00025906	NaN	15.333	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225140	+		76060	26138	53008	53096							0.04864900754705559
SRLEQILPN	9	Unmodified	_SRLEQILPN_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.3021850585938	2	535.303655	1068.59276	-0.6956	-0.00037236	0.10084	5.3978E-05	-0.59476	-0.00031838	535.303453788466	46.047	0.74942	46.098	45.794	46.544	0.051399					63	21	5	0	0	0	0.34489	1	4460	4460		69.628	2.134	1	3028000			76061	6576	53009	53097	83829	83829					0.06120530363295984
SRLERKGII	9	Unmodified	_SRLERKGII_					0	0	0			REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.76904296875	2	536.33529	1070.65603	-0.69742	-0.00037405	2.6207	0.0014056	1.9233	0.0010315	536.3366273544192	86.782	1.5331	86.804	85.858	87.391	0.021263					79	35	3	0	0	0	0.024261	1	10871	10871		54.776	1.8396	1	174660	+		76062	27900	53010	53098	83830	83830					0.12352515871180003
SRLETRRR	8	Unmodified	_SRLETRRR_					0	0	0			REV__ENST00000396212.6_1_16:19535261-19535342:+|nuORF	REV__ENST00000396212.6_1_16:19535261-19535342:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.826416015625	2	537.317963	1072.62137	-0.34611	-0.00018597	-2.8898	-0.0015527	-3.2359	-0.0017387	537.3144366713549	42.914	0.54398	42.943	42.683	43.227	0.029167					33	14	3	0	0	0	0.027866	1	3908	3908		54.776	5.2403	1	165420	+		76063	31727	53011	53099	83831	83831					0.08796692783084836
SRLETRRR	8	Unmodified	_SRLETRRR_					0	0	0			REV__ENST00000396212.6_1_16:19535261-19535342:+|nuORF	REV__ENST00000396212.6_1_16:19535261-19535342:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.317963	1072.62137	-0.50785	-0.00027287	-3.4978	-0.0018794	-4.0056	-0.0021523	537.3145068234373	42.965	0.50455	42.825	42.558	43.063	-0.13929	-0.058638	-0.00037439	NaN	54.776	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173940	+		76064	31727	53011	53099							0.08796692783084836
SRLFRTYGA	9	Unmodified	_SRLFRTYGA_					0	0	0		ENSG00000177602|ENST00000325418|HASPIN;nc|ENSG00000177602|Q8TF76-2|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7603759765625	2	535.790715	1069.56688	-0.34378	-0.00018419	0.18038	9.6644E-05	-0.1634	-8.7549E-05	535.7912620050391	42.125	0.40258	42.002	41.752	42.155	-0.12299					16	10	2	0	0	0	0.024527	1	3750	3750		24.519	6.1948	1	109510			76065	8756	53012	53100	83832	83832					0.03487680911666757
SRLGDWSH	8	Unmodified	_SRLGDWSH_					0	0	0			REV__nc|ENSG00000142002|Q86TI2|DPP9	REV__nc|ENSG00000142002|Q86TI2|DPP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2846374511719	2	479.230491	956.446428	-0.50544	-0.00024222	1.2257	0.00058741	0.72029	0.00034518	479.2311383544333	75.439	0.49984	75.439	75.269	75.769	0					21	13	3	0	0	0	0.027866	1	9316	9316		10.866	0	1	594290	+		76066	24130	53013	53101	83833	83833					-0.033537270819579135
SRLGEFWL	8	Unmodified	_SRLGEFWL_					0	0	0		nc|ENSG00000160339|Q15485-2|FCN2;ENSG00000160339|ENST00000291744|FCN2	nc|ENSG00000160339|Q15485-2|FCN2	nc|ENSG00000160339|Q15485-2|FCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.27581787109375	2	504.269084	1006.52362	0.0056228	2.8354E-06	0.48061	0.00024236	0.48624	0.00024519	504.2693018504905	65.435	0.93019	65.473	65.045	65.975	0.037376					68	25	4	0	0	0	0.44952	1	7668	7668		90.37	10.431	1	10275000			76067	6809	53014	53102	83834	83834					0.020614911343841413
SRLGLRPR	8	Unmodified	_SRLGLRPR_					0	0	0			REV__ENST00000505306.5_1_17:48133647-48154208:+|nuORF;REV__nc|ENSG00000005884|P26006-1|ITGA3	REV__nc|ENSG00000005884|P26006-1|ITGA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	477.7589416503906	2	477.801417	953.588282	-0.72387	-0.00034586	3.4112	0.0016299	2.6873	0.001284	477.80291720302216	38.579	0.57653	38.4	38.102	38.678	-0.17929					33	15	3	0	0	0	0.027866	1	3164	3164		40.778	0	1	603770	+		76068	36428;34007	53015	53103	83835	83835					0.10963110731040615
SRLGRVLP	8	Unmodified	_SRLGRVLP_					0	0	0		ENST00000409262.7_1_2:74328134-74328503:+|nuORF	ENST00000409262.7_1_2:74328134-74328503:+|nuORF	ENST00000409262.7_1_2:74328134-74328503:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2513122558594	2	449.285069	896.555585	-0.90049	-0.00040458	1.1012	0.00049477	0.20074	9.0191E-05	449.2854217656902	35.977	0.69575	35.934	35.405	36.101	-0.042454					28	18	2	0	0	0	0.027866	1	2716	2716		7.1934	2.8771	1	106150			76069	13769	53016	53104	83836	83836					0.10316903608190842
SRLHHAAEV	9	Unmodified	_SRLHHAAEV_					0	0	0		ENST00000361436.9_1_9:130213061-130213654:-|nuORF	ENST00000361436.9_1_9:130213061-130213654:-|nuORF	ENST00000361436.9_1_9:130213061-130213654:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.3099060058594	2	510.27269	1018.53083	-0.24765	-0.00012637	2.3045	0.0011759	2.0568	0.0010496	510.27381278766626	77.269	0.25371	77.058	76.912	77.165	-0.21087					6	5	2	0	0	0	0.024323	1	9495	9495		44.117	0	1	477510			76070	12798	53017	53105	83837	83837					0.022302237348071685
SRLHRLAS	8	Unmodified	_SRLHRLAS_					0	0	0		ENST00000392952.7_1_10:116247750-116251611:-|nuORF	ENST00000392952.7_1_10:116247750-116251611:-|nuORF	ENST00000392952.7_1_10:116247750-116251611:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.76641845703125	2	470.277775	938.540997	-0.1622	-7.6278E-05	3.182	0.0014964	3.0198	0.0014202	470.2792149063771	75.692	0.65158	75.516	75.273	75.925	-0.17548					23	16	2	0	0	0	0.027866	1	8993	8993		20.947	0	1	188120			76071	13434	53018	53106	83838	83838					0.0692683146003219
SRLIAAHLA	9	Unmodified	_SRLIAAHLA_					0	0	0		ENST00000267938.8_1_15:76193245-76193290:+|nuORF	ENST00000267938.8_1_15:76193245-76193290:+|nuORF	ENST00000267938.8_1_15:76193245-76193290:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2909851074219	2	476.290351	950.566149	0.88111	0.00041966	-0.87193	-0.00041529	0.009175	4.37E-06	476.2897840678629	18.923	0.44439	18.767	18.544	18.989	-0.15637					21	8	3	0	0	0	0.94809	1	374	374		29.15	1.2673	1	424700			76072	11621	53019	53107	83839	83839					0.08888886262593587
SRLKEKTM	8	Unmodified	_SRLKEKTM_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.7412109375	2	496.781502	991.54845	-0.85176	-0.00042314	0.79749	0.00039618	-0.054264	-2.6957E-05	496.7816010806309	26.121	0.49402	25.885	25.636	26.13	-0.23603					21	13	2	0	0	0	0.027866	1	1352	1352		37.812	14.769	1	167310	+		76073	23178	53020	53108	83840	83840					0.05233802945440402
SRLKEKTM	8	Unmodified	_SRLKEKTM_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7416687011719	2	496.781502	991.54845	-1.2557	-0.00062382	0.17325	8.6069E-05	-1.0825	-0.00053776	496.78148413756674	26.059	0.51306	25.896	25.588	26.101	-0.16331					29	14	3	0	0	0	0.027866	1	1308	1308		40.778	20.296	1	248470	+		76074	23178	53020	53108	83841	83841					0.05233802945440402
SRLKEKTM	8	Unmodified	_SRLKEKTM_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.781502	991.54845	-0.21677	-0.00010769	-1.2615	-0.00062668	-1.4782	-0.00073437	496.7812779172768	25.842	0.42386	25.671	25.413	25.837	-0.17078	-0.14624	-0.0013979	NaN	37.812	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156650	+		76075	23178	53020	53108							0.05233802945440402
SRLKGIYSD	9	Unmodified	_SRLKGIYSD_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.79296875	2	519.782556	1037.55056	0.40459	0.0002103	2.699	0.0014029	3.1036	0.0016132	519.7838646456441	63.795	0.87331	63.537	63.239	64.112	-0.25824					46	22	4	0	0	0	0.024447	1	7288	7288		25.574	7.2496	1	2963900	+		76076	26011	53021	53109	83842	83842					0.0332855495489639
SRLKGIYSD	9	Unmodified	_SRLKGIYSD_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.782556	1037.55056	-1.012	-0.00052603	-4.45	-0.002313	-5.462	-0.002839	520.2831801787614	63.06	0.7552	63.06	62.729	63.485	0	-0.22246	-0.0074409	NaN	25.574	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2214500	+		76077	26011	53021	53109							0.0332855495489639
SRLKGIYSD	9	Unmodified	_SRLKGIYSD_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.782556	1037.55056	-0.21699	-0.00011279	-2.9492	-0.0015329	-3.1662	-0.0016457	520.2827434907493	63.309	0.72533	63.057	62.683	63.408	-0.25141	-0.22477	-0.0058807	NaN	25.574	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	935510	+		76078	26011	53021	53109							0.0332855495489639
SRLKGIYSD	9	Unmodified	_SRLKGIYSD_					0	0	0			REV__nc|ENSG00000166402|P50607-2|TUB	REV__nc|ENSG00000166402|P50607-2|TUB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.782556	1037.55056	0.69185	0.00035961	-3.4014	-0.001768	-2.7096	-0.0014084	520.2822222806465	63.07	1.1175	63.124	62.474	63.592	0.054104	-0.15835	-0.0063508	NaN	25.574	59	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1079200	+		76079	26011	53021	53109							0.0332855495489639
SRLKLLRRHQK	11	Unmodified	_SRLKLLRRHQK_					0	0	0		nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A;ENSG00000131848|ENST00000683990|ZSCAN5A	nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.792236328125	3	478.975788	1433.90553	0.98112	0.00046993	-3.623	-0.0017353	-2.6419	-0.0012654	479.3083707676799	51.11	0.41989	50.929	50.723	51.143	-0.18071					15	10	2	0	0	0	0.024841	1	5203	5203		10.145	0	1	86795			76080	4555	53022	53110	83843	83843					0.2059369854760007
SRLKPAPPP	9	Unmodified	_SRLKPAPPP_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.28515625	2	481.792727	961.5709	-0.13132	-6.3269E-05	1.2	0.00057815	1.0687	0.00051489	481.7928895166544	54.617	0.45837	54.715	54.558	55.016	0.098015					18	12	2	0	0	0	0.024477	1	5897	5897		20.947	1.587	1	211280			76081	2057	53023	53111	83844	83844					0.08857770405359133
SRLKPTLSVV	10	Unmodified	_SRLKPTLSVV_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2980346679688	2	550.345323	1098.67609	-0.063705	-3.506E-05	0.39636	0.00021813	0.33265	0.00018307	550.3452847897767	54.47	0.79048	54.225	53.98	54.77	-0.2453					57	22	5	0	0	0	0.03519	1	5848	5848		39.253	3.6345	1	1418400	+		76082	20657	53024	53112	83845	83845					0.1307026681113257
SRLKPVSP	8	Unmodified	_SRLKPVSP_					0	0	0		nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2	nc|ENSG00000165566|Q8N7J2-2|AMER2	nc|ENSG00000165566|Q8N7J2-2|AMER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7876892089844	2	442.271627	882.528701	-0.29669	-0.00013122	2.5297	0.0011188	2.2331	0.00098762	442.2726877046348	42.938	0.645	42.825	42.5	43.145	-0.11253					25	16	2	0	0	0	0.027866	1	3946	3946		37.159	0	1	211850			76083	7432	53025	53113	83846	83846					0.08273794996989636
SRLKPVSP	8	Unmodified	_SRLKPVSP_					0	0	0		nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2	nc|ENSG00000165566|Q8N7J2-2|AMER2	nc|ENSG00000165566|Q8N7J2-2|AMER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78741455078125	2	442.271627	882.528701	-0.36539	-0.0001616	1.6134	0.00071358	1.2481	0.00055198	442.2723100284857	43.126	0.62974	42.9	42.714	43.344	-0.22597					21	16	2	0	0	0	0.027866	1	3939	3939		24.203	0	1	259000			76084	7432	53025	53113	83847	83847					0.08273794996989636
SRLKRRRE	8	Unmodified	_SRLKRRRE_					0	0	0			REV__ENST00000343796.6_1_5:142814714-142814924:-|nuORF	REV__ENST00000343796.6_1_5:142814714-142814924:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2980346679688	2	550.841605	1099.66866	-0.1236	-6.8085E-05	1.8727	0.0010315	1.7491	0.00096346	550.8424519253831	54.959	0.43287	54.728	54.494	54.927	-0.23087					25	11	3	0	0	0	0.027866	1	5848	5848		51.335	1.8939	1	498380	+		76085	30671	53026	53114	83848	83848					0.1228097205407721
SRLKRVILA	9	Unmodified	_SRLKRVILA_					0	0	0			REV__ENST00000459912.5_1_10:5682668-5684508:-|nuORF	REV__ENST00000459912.5_1_10:5682668-5684508:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2490844726562	2	528.356025	1054.6975	-0.37229	-0.0001967	0.0051718	2.7326E-06	-0.36712	-0.00019397	528.3558260201894	32.796	0.40286	32.63	32.476	32.879	-0.16565					20	9	3	0	0	0	0.024539	1	2272	2272		20.947	15.026	1	211020	+		76086	32834	53027	53115	83849	83849					0.1723369663052381
SRLLEIQLL	9	Unmodified	_SRLLEIQLL_					0	0	0			REV__ENSG00000178694|ENST00000314622|NSUN3	REV__ENSG00000178694|ENST00000314622|NSUN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7763061523438	2	542.839874	1083.66519	-0.40082	-0.00021758	-0.019609	-1.0645E-05	-0.42043	-0.00022822	542.8396530094952	67.967	1.0954	67.985	67.669	68.764	0.018913					55	28	3	0	0	0	0.020546	1	8034	8034		84.916	0	1	836610	+		76087	27199	53028	53116	83850	83850					0.1267086443685912
SRLLGLHQ	8	Unmodified	_SRLLGLHQ_					0	0	0		ENST00000368358.3_1_1:155253838-155255029:+|nuORF	ENST00000368358.3_1_1:155253838-155255029:+|nuORF	ENST00000368358.3_1_1:155253838-155255029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7972412109375	2	462.274701	922.534849	-0.59924	-0.00027701	0.54039	0.00024981	-0.058856	-2.7208E-05	462.2747674852345	32.784	0.91279	32.784	32.262	33.174	0					39	23	3	0	0	0	0.027866	1	2229	2229		33.516	0	1	680320			76088	12889	53029	53117	83851	83851					0.07048313228528968
SRLLHHLL	8	Unmodified	_SRLLHHLL_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7657775878906	2	494.806168	987.597784	-0.874	-0.00043246	-1.2821	-0.00063439	-2.1561	-0.0010669	494.805419656881	40.523	0.73881	40.374	40.116	40.854	-0.1497					37	19	3	0	0	0	0.027866	1	3560	3560		24.203	0	1	1119200	+		76089	20389	53030	53118	83852	83852					0.10348879016555657
SRLLHLHS	8	Unmodified	_SRLLHLHS_					0	0	0			REV__ENST00000380274.1_1_6:3849645-3849867:+|nuORF	REV__ENST00000380274.1_1_6:3849645-3849867:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7769470214844	2	481.780151	961.545748	-0.332	-0.00015995	-2.7595	-0.0013295	-3.0915	-0.0014894	481.77836531204497	44.987	0.49077	44.987	44.657	45.147	0					21	13	2	0	0	0	0.027866	1	4301	4301		23.042	0	1	110510	+		76090	31470	53031	53119	83853	83853					0.06343715602793054
SRLLLGPG	8	Unmodified	_SRLLLGPG_					0	0	0		ENST00000357325.9_1_1:156712911-156713010:-|nuORF	ENST00000357325.9_1_1:156712911-156713010:-|nuORF	ENST00000357325.9_1_1:156712911-156713010:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.8788146972656	2	406.75307	811.491587	1.6369	0.00066583	0.44375	0.0001805	2.0807	0.00084633	406.7531079358934	20.187	0.38259	19.991	19.854	20.236	-0.19577					12	7	2	0	0	0	0.027866	1	508	508		8.8223	0	1	37792			76091	12691	53032	53120	83854	83854					0.07830123451230975
SRLLRLIR	8	Unmodified	_SRLLRLIR_					0	0	0			REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.78515625	2	513.848368	1025.68218	-0.79212	-0.00040703	4.1796	0.0021477	3.3875	0.0017407	513.8499267652949	73.069	0.53186	73.069	72.867	73.399	0					19	13	2	0	0	0	0.027866	1	8939	8939		34.173	6.2903	1	317500	+		76092	24930	53033	53121	83855	83855					0.17036829833318734
SRLLRYIW	8	Unmodified	_SRLLRYIW_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-7|MADD	REV__nc|ENSG00000110514|Q8WXG6-7|MADD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.766845703125	2	553.827101	1105.63965	-0.44168	-0.00024461	-1.3964	-0.00077338	-1.8381	-0.001018	553.826068909394	54.549	0.55042	54.403	54.173	54.724	-0.14609					38	14	3	0	0	0	0.027866	1	5777	5777		34.173	17.699	1	1592400	+		76093	21863	53034	53122	83856	83856					0.09105434705065818
SRLLTRPPWL	10	Unmodified	_SRLLTRPPWL_					0	0	0			REV__ENST00000474430.5_1_1:155151285-155154671:+|nuORF	REV__ENST00000474430.5_1_1:155151285-155154671:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.869873046875	2	619.87204	1237.72953	-0.47108	-0.00029201	-3.6909	-0.0022879	-4.162	-0.0025799	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.1197	1	11691	11691		20.947	1.8434	1	4765600	+		76094	33116	53035	53123	83857	83857					0.1201706431365892
SRLLVVAD	8	Unmodified	_SRLLVVAD_					0	0	0		ENST00000434411.5_1_17:75084757-75084847:+|nuORF	ENST00000434411.5_1_17:75084757-75084847:+|nuORF	ENST00000434411.5_1_17:75084757-75084847:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.21923828125	2	436.763635	871.512717	-0.64886	-0.0002834	0.26259	0.00011469	-0.38627	-0.00016871	436.763693215048	44.495	0.57398	44.495	44.151	44.725	0					32	16	3	0	0	0	0.027866	1	4258	4258		26.693	12.029	1	499290			76095	14244	53036	53124	83858	83858					0.071820887600893
SRLLYTQDC	9	Unmodified	_SRLLYTQDC_					0	0	0			REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF	REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2978515625	2	549.766049	1097.51754	-0.56143	-0.00030866	-2.8366	-0.0015595	-3.3981	-0.0018681	549.7643599734917	54.468	0.9373	54.332	54.021	54.958	-0.13617					67	25	4	0	0	0	0.024405	1	5850	5850		35.618	0	1	2331100	+		76096	23278	53037	53125	83859	83859					-0.02731395159457861
SRLMDQSLN	9	Unmodified	_SRLMDQSLN_					0	0	0			REV__ENSG00000065491|ENST00000373491|TBC1D22B	REV__ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3067626953125	2	532.263673	1062.51279	0.42258	0.00022492	2.6911	0.0014324	3.1137	0.0016573	532.2654539506859	58.815	0.33081	58.628	58.462	58.793	-0.18705					18	8	3	0	0	0	0.024261	1	6665	6665		37.812	0	1	142900	+		76097	20311	53038	53126	83860	83860					-0.015962793022026744
SRLMLCDEV	9	Unmodified	_SRLMLCDEV_					0	0	0			REV__ENST00000450326.5_1_3:9470680-9476039:+|nuORF	REV__ENST00000450326.5_1_3:9470680-9476039:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.8092041015625	2	533.257002	1064.49945	-1.0873	-0.00057979	-0.37065	-0.00019765	-1.4579	-0.00077744	533.2566809503166	46.04	0.48265	45.837	45.598	46.081	-0.20226					17	12	2	0	0	0	0.022832	1	4414	4414		82.241	23.459	1	363970	+		76098	32699	53039	53127	83861	83861					-0.030218534058349178
SRLNPGQVGL	10	Unmodified	_SRLNPGQVGL_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2617797851562	2	520.795998	1039.57744	-1.2868	-0.00067017	1.3607	0.00070863	0.073843	3.8457E-05	520.7964420609015	22.151	0.85343	22.225	22.078	22.931	0.073954					36	17	3	0	0	0	0.03519	1	760	760		13.454	0	1	80172	+		76099	26525	53040	53128	83862	83862					0.05923663566090909
SRLNPLVQ	8	Unmodified	_SRLNPLVQ_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2670593261719	2	463.774534	925.534515	0.96287	0.00044655	-0.54557	-0.00025302	0.41729	0.00019353	463.77415323119544	42.961	0.507	42.992	42.722	43.229	0.030827					19	13	2	0	0	0	0.027866	1	3906	3906		37.159	5.2042	1	410260			76100	9010	53041	53129	83863	83863					0.06876893508660942
SRLPGDPA	8	Unmodified	_SRLPGDPA_					0	0	0		ENST00000579129.5_1_18:74778339-74844775:-|nuORF;ENST00000487778.5_1_18:74809335-74844688:-|nuORF	ENST00000579129.5_1_18:74778339-74844775:-|nuORF	ENST00000579129.5_1_18:74778339-74844775:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.73907470703125	2	406.716685	811.418816	0.26333	0.0001071	-0.12598	-5.1237E-05	0.13736	5.5865E-05	406.71647490025686	62.688	0.60131	62.688	62.489	63.09	0					22	14	2	0	0	0	0.027866	1	7278	7278		12.959	0	1	426750			76101	15374	53042	53130	83864	83864					0.005563696578064992
SRLPGPSRVP	10	Unmodified	_SRLPGPSRVP_					0	0	0		ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7974853515625	2	533.311815	1064.60908	-0.1407	-7.5039E-05	2.7455	0.0014642	2.6048	0.0013891	533.3130984803303	90.417	0.58514	90.43	90.2	90.785	0.013443					29	13	3	0	0	0	0.03519	1	11395	11395		19.997	4.355	1	250680			76102	16540	53043	53131	83865	83865					0.07935656320046292
SRLPGPSRVP	10	Unmodified	_SRLPGPSRVP_					0	0	0		ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.311815	1064.60908	-1.5631	-0.00083363	4.3255	0.0023068	2.7624	0.0014732	533.3139795944396	90.456	0.54482	90.456	90.133	90.678	0	0.12903	0.00071956	NaN	14.137	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270120			76103	16540	53043	53131							0.07935656320046292
SRLPGPSRVP	10	Unmodified	_SRLPGPSRVP_					0	0	0		ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.311815	1064.60908	-0.41196	-0.0002197	3.3541	0.0017888	2.9422	0.0015691	533.3135366440537	90.414	0.49944	90.397	90.155	90.655	-0.016716	0.069994	-0.00031654	NaN	14.137	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252700			76104	16540	53043	53131							0.07935656320046292
SRLPGPSRVP	10	Unmodified	_SRLPGPSRVP_					0	0	0		ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.311815	1064.60908	-1.1757	-0.000627	4.5987	0.0024526	3.423	0.0018256	533.3143043664204	90.346	0.4039	90.191	89.944	90.348	-0.1552	-0.13634	0.001011	NaN	14.137	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98762			76105	16540	53043	53131							0.07935656320046292
SRLPGPSRVP	10	Unmodified	_SRLPGPSRVP_					0	0	0		ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	ENST00000547725.1_1_12:78362333-78400327:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.311815	1064.60908	-0.035419	-1.8889E-05	3.0931	0.0016496	3.0577	0.0016307	533.3139783285866	90.401	0.41286	90.262	90.037	90.45	-0.13825	-0.064932	-0.00059494	NaN	14.137	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115480			76106	16540	53043	53131							0.07935656320046292
SRLPKEKVL	9	Unmodified	_SRLPKEKVL_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.3024291992188	2	535.340041	1068.66553	-0.51917	-0.00027793	-0.36672	-0.00019632	-0.8859	-0.00047426	535.3397150415406	45.938	0.76633	45.938	45.714	46.48	0					39	21	3	0	0	0	0.024367	1	4540	4540		52.937	23.767	1	754550	+		76107	28806	53044	53132	83866	83866					0.13394284156697722
SRLPLCKVE	9	Unmodified	_SRLPLCKVE_					0	0	0		ENST00000497921.2_3_3:42861167-42906029:+|nuORF	ENST00000497921.2_3_3:42861167-42906029:+|nuORF	ENST00000497921.2_3_3:42861167-42906029:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7713623046875	2	522.797152	1043.57975	0.42488	0.00022213	-0.85166	-0.00044524	-0.42677	-0.00022312	522.796789697054	72.46	0.79441	72.196	71.758	72.553	-0.26479					36	18	3	0	0	0	0.024484	1	8519	8519		23.523	0	1	197900			76108	15607	53045	53133	83867	83867					0.059703759795411315
SRLPPQLM	8	Unmodified	_SRLPPQLM_					0	0	0		ENST00000602622.5_1_16:67691511-67691700:-|nuORF	ENST00000602622.5_1_16:67691511-67691700:-|nuORF	ENST00000602622.5_1_16:67691511-67691700:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.7821350097656	2	471.265487	940.516422	1.8544	0.00087391	-1.377	-0.00064895	0.47734	0.00022496	471.2646533228472	19.087	0.34534	18.853	18.682	19.027	-0.23345					17	6	4	0	0	0	0.027866	1	347	347		18.324	4.5491	1	126130			76109	17531	53046	53134	83868	83868					0.043784352623106315
SRLPQLLD	8	Unmodified	_SRLPQLLD_					0	0	0		ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.79522705078125	2	471.274367	940.53418	-0.9053	-0.00042664	0.35832	0.00016887	-0.54698	-0.00025778	471.2745034124289	43.136	0.41928	42.91	42.714	43.133	-0.22597					21	10	3	0	0	0	0.027866	1	3893	3893		40.778	0	1	196130			76110	9423	53047	53135	83869	83869					0.061534737887996016
SRLQLFIT	8	Unmodified	_SRLQLFIT_					0	0	0		ENSG00000030304|ENST00000374448|MUSK;nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2926940917969	2	489.292559	976.570566	-0.28462	-0.00013926	1.1853	0.00057994	0.90064	0.00044068	489.2929976411419	66.475	0.59512	66.193	65.904	66.499	-0.28148					43	19	3	0	0	0	0.71063	1	7895	7895		66.429	5.4573	1	6168800			76111	1010	53048	53136	83870	83870					0.08134350685497793
SRLQLFIT	8	Unmodified	_SRLQLFIT_					0	0	0		ENSG00000030304|ENST00000374448|MUSK;nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK	ENSG00000030304|ENST00000374448|MUSK	ENSG00000030304|ENST00000374448|MUSK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2928771972656	2	489.292559	976.570566	-0.4915	-0.00024049	1.3142	0.00064305	0.82275	0.00040256	489.29298572711707	66.192	0.71687	66.222	65.89	66.607	0.030106					47	21	3	0	0	0	0.53523	1	7802	7802		82.305	2.854	1	5435400			76112	1010	53048	53136	83871	83871					0.08134350685497793
SRLQLNTSL	9	Unmodified	_SRLQLNTSL_					0	0	0		ENST00000452673.6_1_5:179155715-179155943:+|nuORF	ENST00000452673.6_1_5:179155715-179155943:+|nuORF	ENST00000452673.6_1_5:179155715-179155943:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2657470703125	2	516.29583	1030.57711	-0.40029	-0.00020667	4.3316	0.0022364	3.9313	0.0020297	516.7980375330092	57.424	0.30447	57.424	57.227	57.532	0					10	7	2	0	0	0	0.024374	1	6435	6435		40.778	7.9657	1	140060			76113	14537	53049	53137	83872	83872					0.06304243846238933
SRLQTVPA	8	Unmodified	_SRLQTVPA_					0	0	0		ENST00000272983.12_1_2:242089243-242089768:+|nuORF	ENST00000272983.12_1_2:242089243-242089768:+|nuORF	ENST00000272983.12_1_2:242089243-242089768:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	435.2874450683594	2	436.253434	870.492316	-0.46891	-0.00020456	-1.4008	-0.00061111	-1.8697	-0.00081567	436.25355124328735	25.862	0.49261	25.699	25.373	25.865	-0.16331					23	11	3	0	0	0	0.027866	1	1251	1251		24.519	0	1	120000			76114	11658	53050	53138	83873	83873					0.051889181002820806
SRLRARSPM	9	Unmodified	_SRLRARSPM_					0	0	0			REV__ENST00000405854.5_1_22:50050759-50050921:-|nuORF	REV__ENST00000405854.5_1_22:50050759-50050921:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3297119140625	2	537.303467	1072.59238	-0.68479	-0.00036794	-2.6798	-0.0014399	-3.3646	-0.0018078	537.3021687666701	43.734	0.39531	43.764	43.558	43.953	0.030827					16	10	2	0	0	0	0.024397	1	4084	4084		31.53	0	1	206160	+		76115	31917	53051	53139	83874	83874					0.058988321624156015
SRLRDPCH	8	Unmodified	_SRLRDPCH_					0	0	0			REV__ENST00000343242.8_1_7:1580346-1581177:+|nuORF	REV__ENST00000343242.8_1_7:1580346-1581177:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.8135986328125	2	492.245618	982.476682	-0.012247	-6.0287E-06	0.9514	0.00046832	0.93915	0.00046229	492.2452922254055	53.304	0.72216	53.114	52.905	53.627	-0.18982					30	19	3	0	0	0	0.027866	1	5634	5634		37.159	0	1	240130	+		76116	30663	53052	53140	83875	83875					-0.015256916884254679
SRLRKFITLI	10	Unmodified	_SRLRKFITLI_					0	0	0			REV__ENSG00000242247|ENST00000263245|ARFGAP3	REV__ENSG00000242247|ENST00000263245|ARFGAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2389221191406	3	416.271319	1245.79213	-0.42221	-0.00017575	-3.3957	-0.0014135	-3.8179	-0.0015893	416.27109639395456	41.959	0.40675	41.727	41.43	41.837	-0.23186					18	10	3	0	0	0	0.03519	1	3748	3748		28.577	9.3141	1	109420	+		76117	28974	53053	53141	83876	83876					0.1790621038185236
SRLRLDILL	9	Unmodified	_SRLRLDILL_					0	0	0		ENST00000531012.1_1_11:74982743-74985434:-|nuORF	ENST00000531012.1_1_11:74982743-74985434:-|nuORF	ENST00000531012.1_1_11:74982743-74985434:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2978515625	2	549.853316	1097.69208	-0.71703	-0.00039426	3.5575	0.0019561	2.8404	0.0015618	549.8552395415313	54.318	0.79859	54.182	53.897	54.696	-0.13617					53	22	3	0	0	0	0.024457	1	5850	5850		29.15	0	1	2121900			76118	16250	53054	53142	83877	83877					0.14713973048060325
SRLRNHWH	8	Unmodified	_SRLRNHWH_					0	0	0		ENST00000555843.5_1_14:31581697-31582359:-|nuORF	ENST00000555843.5_1_14:31581697-31582359:-|nuORF	ENST00000555843.5_1_14:31581697-31582359:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8109741210938	2	553.291748	1104.56894	-1.0996	-0.00060842	-1.3565	-0.00075054	-2.4561	-0.001359	553.2906414704744	51.435	0.63735	51.522	51.077	51.715	0.087006					28	17	2	0	0	0	0.027866	1	5369	5369		25.45	0	1	332140			76119	16696	53055	53143	83878	83878					0.020841544401037027
SRLRQENL	8	Unmodified	_SRLRQENL_					0	0	0		nc|ENSG00000090565|O75154-2|RAB11FIP3;ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3	nc|ENSG00000090565|O75154-2|RAB11FIP3	nc|ENSG00000090565|O75154-2|RAB11FIP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7696838378906	2	508.285797	1014.55704	-0.53998	-0.00027446	-1.0126	-0.00051471	-1.5526	-0.00078917	508.28422771653607	36.505	0.46952	36.543	36.374	36.843	0.038044					20	12	3	0	0	0	0.027866	1	2824	2824		53.351	3.3269	1	52304			76120	1936	53056	53144	83879	83879					0.050344929062816846
SRLRVPHLL	9	Unmodified	_SRLRVPHLL_					0	0	0		ENST00000535789.1_1_11:63438917-63439196:-|nuORF	ENST00000535789.1_1_11:63438917-63439196:-|nuORF	ENST00000535789.1_1_11:63438917-63439196:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.7818603515625	2	545.845825	1089.6771	-1.0487	-0.00057242	2.6868	0.0014666	1.6381	0.00089414	545.8474095867188	75.637	0.35098	75.393	75.266	75.617	-0.24455					11	9	2	0	0	0	0.024436	1	9276	9276		23.042	0	1	164390			76121	16353	53057	53145	83880	83880					0.13584525970691175
SRLRYKDY	8	Unmodified	_SRLRYKDY_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2581787109375	2	550.795998	1099.57744	-0.23216	-0.00012787	1.4554	0.00080165	1.2233	0.00067378	551.2991800090086	63.811	0.38432	63.583	63.44	63.825	-0.22773					11	9	2	0	0	0	0.027866	1	7221	7221		40.573	1.7665	1	366100			76122	6374	53058	53146	83881	83881					0.03163663566078867
SRLRYKDY	8	Unmodified	_SRLRYKDY_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	550.795998	1099.57744	1.3785	0.0007593	4.9946	0.002751	6.3732	0.0035103	550.798807808404	63.975	0.28973	63.975	63.736	64.026	0	0.19577	0.00098546	NaN	40.573	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525480			76123	6374	53058	53146							0.03163663566078867
SRLSEKPAPI	10	Unmodified	_SRLSEKPAPI_					0	0	0			REV__ENSG00000142945|ENST00000372224|KIF2C	REV__ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.3178100585938	2	549.319306	1096.62406	-0.14116	-7.7542E-05	-2.4581	-0.0013503	-2.5993	-0.0014278	549.3178899882961	99.835	0.49946	99.664	99.361	99.861	-0.17088					45	13	4	0	0	0	1.1228	1	12363	12363		22.58	1.6327	1	420940	+		76124	24187	53059	53147	83882	83882					0.0796110339738334
SRLSEMYW	8	Unmodified	_SRLSEMYW_					0	0	0			REV__ENST00000551915.5_1_12:83081308-83379891:+|nuORF	REV__ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2845458984375	2	536.250034	1070.48552	-1.4157	-0.00075917	3.1331	0.0016801	1.7174	0.00092097	536.2519101585671	38.095	0.63707	38.012	37.777	38.414	-0.082512					30	17	2	0	0	0	0.027866	1	3123	3123		30.504	0	1	409430	+		76125	27237	53060	53148	83883	83883					-0.04690762842596996
SRLSKVAPV	9	Unmodified	_SRLSKVAPV_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7823791503906	2	478.798009	955.581465	-0.20555	-9.8415E-05	0.60996	0.00029205	0.40442	0.00019363	478.7980523877576	57.267	0.47375	57.1	56.932	57.406	-0.1672					19	12	2	0	0	0	0.02435	1	6293	6293		34.173	0	1	450610			76126	5042	53061	53149	83884	83884					0.10189753059796658
SRLSKVAPV	9	Unmodified	_SRLSKVAPV_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7821960449219	2	478.798009	955.581465	0.14879	7.124E-05	-0.24761	-0.00011856	-0.098823	-4.7316E-05	478.7978214385912	57.319	0.46704	57.117	56.891	57.358	-0.20208					25	12	3	0	0	0	0.024288	1	6286	6286		22.58	1.6327	1	511470			76127	5042	53061	53149	83885	83885					0.10189753059796658
SRLSKVAPV	9	Unmodified	_SRLSKVAPV_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7826232910156	2	478.798009	955.581465	-0.25093	-0.00012015	0.54899	0.00026286	0.29806	0.00014271	478.79798084456735	57.402	0.43401	57.169	56.989	57.424	-0.23363					18	11	2	0	0	0	0.024344	1	6289	6289		30.318	0	1	459010			76128	5042	53061	53149	83886	83886					0.10189753059796658
SRLSKVAPV	9	Unmodified	_SRLSKVAPV_					0	0	0		ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	ENSG00000136750|ENST00000376261|GAD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	478.798009	955.581465	-0.22502	-0.00010774	0.26017	0.00012457	0.035149	1.6829E-05	478.7980542578365	57.104	0.51825	57.199	56.911	57.429	0.095306	0.010865	0.00024676	NaN	22.58	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	919780			76129	5042	53061	53149							0.10189753059796658
SRLSLAVGLP	10	Unmodified	_SRLSLAVGLP_					0	0	0			REV__ENST00000421177.6_1_4:4388298-4388469:+|nuORF	REV__ENST00000421177.6_1_4:4388298-4388469:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	506.8102722167969	2	506.811116	1011.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.558	1	56.656	56.156	57.156	0.097893								0	0	0	0.50561	1	6235	6235		67.494	0	1		+		76130	32177	53062	53150	83887	83887					0.10234022231270501
SRLSRGGKGR	10	Unmodified	_SRLSRGGKGR_					0	0	0			REV__ENST00000568470.5_1_16:66968788-66968911:+|nuORF	REV__ENST00000568470.5_1_16:66968788-66968911:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3048706054688	2	537.317963	1072.62137	-0.71461	-0.00038397	0.9854	0.00052947	0.27079	0.0001455	537.3184576388139	68.566	0.27159	68.566	68.482	68.754	0					9	6	2	0	0	0	0.03519	1	8218	8218		38.754	19.65	1	276350	+		76131	35341	53063	53151	83888	83888					0.08796692783084836
SRLSRSRVYT	10	Unmodified	_SRLSRSRVYT_					0	0	0			REV__OR2L2|p.P261S|1|0.46|ENSG00000203663|chr1:248039048-248039048|C/T|missense_variant	REV__OR2L2|p.P261S|1|0.46|ENSG00000203663|chr1:248039048-248039048|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5099182128906	3	408.898432	1223.67347	0.027951	1.1429E-05	-0.22474	-9.1895E-05	-0.19679	-8.0466E-05	408.89768941691756	28.198	0.61621	28.194	27.966	28.582	-0.0042019					21	14	2	0	0	0	0.03519	1	1645	1645		27.644	4.1212	1	37440	+		76132	37312	53064	53152	83889	83889					0.07057811406184555
SRLSSAVSPTC	11	Unmodified	_SRLSSAVSPTC_					0	0	0		ENST00000294981.8_1_1:206905793-206906060:+|nuORF	ENST00000294981.8_1_1:206905793-206906060:+|nuORF	ENST00000294981.8_1_1:206905793-206906060:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.786376953125	2	554.27678	1106.53901	-0.50457	-0.00027967	-1.8923	-0.0010488	-2.3968	-0.0013285	554.2753683218217	55.395	0.96298	55.18	54.639	55.602	-0.21551					37	26	2	0	0	0	0.024749	1	5994	5994		11.097	0	1	153740			76133	11822	53065	53153	83890	83890					-0.010000101307241493
SRLTEQLDLK	10	Unmodified	_SRLTEQLDLK_					0	0	0		ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.88775634765625	3	401.562827	1201.66665	0.19516	7.8367E-05	2.7813	0.0011169	2.9764	0.0011952	401.5630662116949	30.841	0.79991	30.853	30.499	31.299	0.011799					48	18	4	0	0	0	0.03519	1	1961	1961		80.916	20.749	1	710860			76134	16563	53066	53154	83891	83891					0.07388453734938594
SRLTFWLR	8	Unmodified	_SRLTFWLR_					0	0	0		chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7805786132812	2	539.811451	1077.60835	-1.2159	-0.00065638	-0.50435	-0.00027226	-1.7203	-0.00092863	539.8110781542323	44.852	0.65775	44.752	44.354	45.012	-0.099449					30	16	3	0	0	0	0.027866	1	4154	4154		15.642	0	1	409460			76135	276	53067	53155	83892	83892					0.07264861670978462
SRLTFWLR	8	Unmodified	_SRLTFWLR_					0	0	0		chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.77978515625	2	539.811451	1077.60835	-1.4778	-0.00079776	-0.77292	-0.00041723	-2.2508	-0.001215	539.8108977387606	44.997	0.72885	44.786	44.327	45.056	-0.21109					30	18	3	0	0	0	0.027866	1	4153	4153		37.159	17.162	1	408750			76136	276	53067	53155	83893	83893					0.07264861670978462
SRLTFWLR	8	Unmodified	_SRLTFWLR_					0	0	0		chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	chr1:16978314-16980951|383|22.34|0.22|6.68|-|1|TE_info:MIRc,MIRc_dup612,MIR,SINE,donor,-,16980951,16981020|MFAP2,None|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.811451	1077.60835	-0.77312	-0.00041734	-1.2521	-0.00067592	-2.0253	-0.0010933	539.8105325154279	45.059	0.50639	44.806	44.549	45.055	-0.25252	0.024688	-0.00047695	NaN	21.96	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438590			76137	276	53067	53155							0.07264861670978462
SRLTHLSL	8	Unmodified	_SRLTHLSL_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2668762207031	2	463.774534	925.534515	-0.047909	-2.2219E-05	0.72959	0.00033836	0.68168	0.00031614	463.774815011459	43.105	0.36063	42.965	42.702	43.063	-0.13929					15	9	2	0	0	0	0.027866	1	3971	3971		26.693	0	1	333350			76138	2298	53068	53156	83894	83894					0.0687689350867231
SRLTRAVL	8	Unmodified	_SRLTRAVL_					0	0	0			REV__ENST00000522601.5_1_8:8086126-8093767:+|nuORF	REV__ENST00000522601.5_1_8:8086126-8093767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2394104003906	2	458.290351	914.566149	-0.10157	-4.6548E-05	-0.35804	-0.00016409	-0.45961	-0.00021063	458.2901980324911	33.758	0.44537	33.758	33.487	33.932	0					15	11	2	0	0	0	0.027866	1	2431	2431		21.96	6.3181	1	104650	+		76139	34339	53069	53157	83895	83895					0.10544886262607633
SRLTRAVL	8	Unmodified	_SRLTRAVL_					0	0	0			REV__ENST00000522601.5_1_8:8086126-8093767:+|nuORF	REV__ENST00000522601.5_1_8:8086126-8093767:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	458.290351	914.566149	-0.29814	-0.00013663	-3.8583	-0.0017682	-4.1565	-0.0019049	458.28857441487867	34.067	0.25552	33.86	33.75	34.005	-0.20696	0.13057	-0.0017072	NaN	15.642	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48841	+		76140	34339	53069	53157							0.10544886262607633
SRLTVNVPI	9	Unmodified	_SRLTVNVPI_					0	0	0		ENSG00000153820|ENST00000392056|SPHKAP;nc|ENSG00000153820|Q2M3C7-2|SPHKAP	ENSG00000153820|ENST00000392056|SPHKAP	ENSG00000153820|ENST00000392056|SPHKAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7918701171875	2	499.803291	997.59203	0.11646	5.8207E-05	-1.3315	-0.00066551	-1.2151	-0.0006073	499.80302129848695	52.508	0.78519	52.599	52.003	52.788	0.091942					38	19	4	0	0	0	0.024447	1	5548	5548		19.104	0	1	1082000			76141	6360	53070	53158	83896	83896					0.09313735714226823
SRLVATTEL	9	Unmodified	_SRLVATTEL_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7882080078125	2	495.284931	988.55531	-0.8608	-0.00042634	0.80151	0.00039698	-0.059282	-2.9361E-05	495.2855005444292	30.358	0.45412	30.358	30.096	30.55	0					17	10	3	0	0	0	0.024288	1	1957	1957		52.937	6.9847	1	452240	+		76142	27860	53071	53159	83897	83897					0.060574390976512404
SRLVFWRRK	9	Unmodified	_SRLVFWRRK_					0	0	0			REV__nc|ENSG00000109458|Q13480-2|GAB1	REV__nc|ENSG00000109458|Q13480-2|GAB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.377197265625	2	624.377823	1246.74109	-0.38101	-0.0002379	3.7793	0.0023597	3.3983	0.0021218	624.3801142496206	100.73	0.45973	100.6	100.31	100.77	-0.12504					31	13	3	0	0	0	0.98925	1	12493	12493		22.58	1.7425	1	407080	+		76143	21793	53072	53160	83898	83898					0.1275930612762295
SRLVQPVLW	9	Unmodified	_SRLVQPVLW_					0	0	0		SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant	SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant	SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2962646484375	2	549.326934	1096.63931	-0.90176	-0.00049536	-2.5871	-0.0014212	-3.4889	-0.0019165	549.32534701554	21.273	0.58073	21.183	21.01	21.591	-0.090092					18	11	2	0	0	0	0.024523	1	638	638		21.96	0	1	59958			76144	37887	53073	53161	83899	83899					0.09486014985213842
SRLVRPVPT	9	Unmodified	_SRLVRPVPT_					0	0	0		ENST00000323013.6_1_22:42908285-42908810:-|nuORF	ENST00000323013.6_1_22:42908285-42908810:-|nuORF	ENST00000323013.6_1_22:42908285-42908810:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7685546875	2	512.816733	1023.61891	-0.66979	-0.00034348	-1.2183	-0.00062476	-1.8881	-0.00096824	512.8159433256146	39.099	0.57673	38.876	38.686	39.263	-0.22311					28	15	2	0	0	0	0.024495	1	3286	3286		14.137	0	1	703880			76145	12232	53074	53162	83900	83900					0.10804844325411977
SRLWTDKLA	9	Unmodified	_SRLWTDKLA_					0	0	0			REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	REV__nc|ENSG00000141497|Q9H091-2|ZMYND15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2830810546875	2	545.306198	1088.59784	-0.48689	-0.0002655	3.1795	0.0017338	2.6926	0.0014683	545.3076953965442	51.322	0.46368	51.045	50.929	51.393	-0.27643					20	11	2	0	0	0	0.024319	1	5277	5277		39.253	12.56	1	226190	+		76146	36723	53075	53163	83901	83901					0.057088342259021374
SRMCNLII	8	Carbamidomethyl (C)	_SRMC(Carbamidomethyl (C))NLII_	SRMC(1)NLII		SRMC(74)NLII		0	1	0			REV__ENSG00000177409|ENST00000318238|SAMD9L;REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.762939453125	2	503.762255	1005.50996	-0.020892	-1.0524E-05	0.20584	0.00010369	0.18494	9.3168E-05	503.76225673956753	47.842	0.8778	47.655	47.279	48.157	-0.18684					40	23	2	0	0	0	0.6248	1	4699	4699		73.975	8.1716	1	1654300	+		76147	27110;28678	53076	53164	83902	83902	357				0.007421740392828724
SRMRAAAALP	10	Unmodified	_SRMRAAAALP_					0	0	0		ENST00000353796.7_1_7:5085455-5085919:+|nuORF	ENST00000353796.7_1_7:5085455-5085919:+|nuORF	ENST00000353796.7_1_7:5085455-5085919:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2706909179688	2	522.292568	1042.57058	-0.59008	-0.0003082	0.64692	0.00033788	0.056842	2.9688E-05	522.2927883589786	64.337	0.70052	64.074	63.754	64.455	-0.2626					27	18	3	0	0	0	0.03519	1	7586	7586		30.318	0	1	163900			76148	12616	53077	53165	83903	83903					0.05100027413868702
SRMRTQSPP	9	Unmodified	_SRMRTQSPP_					0	0	0		HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;HCN1|p.Q689Sfs*91|1|0.12|ENSG00000164588|chr5:45262529-45262529|G/-|frameshift_variant;ENSG00000164588|ENST00000303230|HCN1	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3004150390625	2	530.271832	1058.52911	-1.7972	-0.00095299	0.7049	0.00037379	-1.0923	-0.0005792	530.2715390522749	30.333	0.24977	30.333	30.176	30.426	0					6	5	2	0	0	0	0.024427	1	1932	1932		26.693	13.734	1	26702			76149	7294	53078	53166	83904	83904					0.002188466545476331
SRMRVLPA	8	Unmodified	_SRMRVLPA_					0	0	0			REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2508850097656	2	465.271104	928.527655	-0.61295	-0.00028519	-4.1747	-0.0019424	-4.7876	-0.0022276	465.2690759514059	64.562	0.98005	64.299	64.047	65.027	-0.2626					32	25	2	0	0	0	0.027866	1	7683	7683		33.516	10.473	1	359790	+		76150	25750	53079	53167	83905	83905					0.06053257356438735
SRMRVLPA	8	Unmodified	_SRMRVLPA_					0	0	0			REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.271104	928.527655	0.44021	0.00020482	-5.3848	-0.0025054	-4.9446	-0.0023006	465.26854171607584	64.283	0.62672	64.283	63.99	64.617	0	-0.010474	-0.00027711	NaN	33.516	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430900	+		76151	25750	53079	53167							0.06053257356438735
SRMRVLPA	8	Unmodified	_SRMRVLPA_					0	0	0			REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	REV__nc|ENSG00000164403|Q2M3G4-2|SHROOM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.271104	928.527655	1.3189	0.00061364	-6.1189	-0.0028469	-4.8	-0.0022333	465.2681293756166	64.252	0.6339	64.298	64.046	64.68	0.045502	0.0043935	-0.00096018	NaN	33.516	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497340	+		76152	25750	53079	53167							0.06053257356438735
SRMRVLSF	8	Unmodified	_SRMRVLSF_					0	0	0		ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.3264465332031	2	498.276386	994.53822	0.92188	0.00045935	2.0403	0.0010166	2.9622	0.001476	498.2766640702442	36.272	0.49097	36.073	35.843	36.334	-0.19829					22	12	3	0	0	0	0.027866	1	2796	2796		11.511	0	1	264070			76153	7464	53080	53168	83906	83906					0.040732400108709044
SRNFIGIL	8	Unmodified	_SRNFIGIL_					0	0	0			REV__nc|ENSG00000162594|Q5VWK5-6|IL23R	REV__nc|ENSG00000162594|Q5VWK5-6|IL23R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.27215576171875	2	460.271627	918.528701	-0.10775	-4.9596E-05	-0.28214	-0.00012986	-0.38989	-0.00017946	460.27152890198664	61.236	0.77537	61.03	60.734	61.509	-0.20599					42	18	4	0	0	0	0.74904	1	6848	6848		63.306	4.5243	1	1482800	+		76154	25458	53081	53169	83907	83907					0.06617794996998327
SRNGPLLP	8	Unmodified	_SRNGPLLP_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2369689941406	2	427.248152	852.481751	-1.4486	-0.00061893	-3.3665	-0.0014383	-4.8152	-0.0020573	427.2481242567081	30.158	0.40561	30.158	29.895	30.3	0					11	9	2	0	0	0	0.027866	1	1911	1911		33.516	0	1	39724	+		76155	29042	53082	53170	83908	83908					0.04960935445865289
SRNHRLCR	8	Unmodified	_SRNHRLCR_					0	0	0			REV__ENSG00000123607|ENST00000243344|TTC21B	REV__ENSG00000123607|ENST00000243344|TTC21B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.2473754882812	2	521.277783	1040.54101	0.33596	0.00017513	-1.2653	-0.00065956	-0.92931	-0.00048443	521.277408888061	83.614	0.63254	83.475	83.168	83.801	-0.1386					23	14	2	0	0	0	0.027866	1	10078	10078		23.042	0	1	97779	+		76156	22711	53083	53171	83909	83909					0.022365081883890525
SRNKVLATM	9	Unmodified	_SRNKVLATM_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.757080078125	2	510.286951	1018.55935	-0.44797	-0.0002286	-3.0083	-0.0015351	-3.4563	-0.0017637	510.2851643551974	34.615	1.2593	34.61	34.029	35.288	-0.0045624					82	32	4	0	0	0	0.024427	1	2583	2583		42.396	3.59	1	1114900			76157	3729	53084	53172	83910	83910					0.050812053197319074
SRNREVLL	8	Unmodified	_SRNREVLL_					0	0	0			REV__ENSG00000173013|ENST00000310085|CCDC96	REV__ENSG00000173013|ENST00000310085|CCDC96	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.81353759765625	2	493.790715	985.566878	-0.12419	-6.1325E-05	-3.2709	-0.0016152	-3.3951	-0.0016765	493.7890982749707	29.93	1.5176	29.78	28.869	30.386	-0.14952					58	35	3	0	0	0	0.027866	1	1871	1871		31.955	0	1	214540	+		76158	26731	53085	53173	83911	83911					0.07351680911676794
SRNRTGMMH	9	Unmodified	_SRNRTGMMH_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.8033447265625	2	545.255659	1088.49677	-1.5383	-0.00083876	4.0777	0.0022234	2.5394	0.0013846	545.2576637145337	45.029	0.68975	44.88	44.39	45.079	-0.1488					27	19	2	0	0	0	0.024205	1	4355	4355		44.117	0	1	118060			76159	1870	53086	53174	83912	83912					-0.04394264020083938
SRNRVTVL	8	Unmodified	_SRNRVTVL_					0	0	0			REV__ENSG00000169488|ENST00000305051|OR4K15	REV__ENSG00000169488|ENST00000305051|OR4K15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7550354003906	2	472.785433	943.556313	0.88212	0.00041705	-2.8466	-0.0013458	-1.9645	-0.00092879	472.7839432551044	39.547	0.3391	39.547	39.357	39.696	0					14	9	2	0	0	0	0.027866	1	3415	3415		51.335	0	1	233580	+		76160	26370	53087	53175	83913	83913					0.08227698257235261
SRNSFTKSC	9	Unmodified	_SRNSFTKSC_					0	0	0			REV__ENSG00000198482|ENST00000359798|ZNF808	REV__ENSG00000198482|ENST00000359798|ZNF808	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7545776367188	2	515.242741	1028.47093	-0.48804	-0.00025146	0.20289	0.00010454	-0.28515	-0.00014692	515.2428005159487	27.62	0.56759	27.607	27.352	27.92	-0.012983					20	14	2	0	0	0	0.024447	1	1487	1487		32.812	9.7699	1	75668	+		76161	28426	53088	53176	83914	83914					-0.04216834990734242
SRNSFTKSC	9	Unmodified	_SRNSFTKSC_					0	0	0			REV__ENSG00000198482|ENST00000359798|ZNF808	REV__ENSG00000198482|ENST00000359798|ZNF808	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.242741	1028.47093	-0.80107	-0.00041274	1.0715	0.00055206	0.27039	0.00013932	515.2432334099966	27.701	0.40958	27.701	27.435	27.844	0	0.17377	0.00028302	NaN	32.812	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85335	+		76162	28426	53088	53176							-0.04216834990734242
SRNSFTKSC	9	Unmodified	_SRNSFTKSC_					0	0	0			REV__ENSG00000198482|ENST00000359798|ZNF808	REV__ENSG00000198482|ENST00000359798|ZNF808	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.242741	1028.47093	-1.3892	-0.00071575	1.3271	0.0006838	-0.062014	-3.1952E-05	515.2434285348927	27.193	0.4347	27.274	27.136	27.571	0.081293	-0.253	0.0005465	NaN	32.812	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83854	+		76163	28426	53088	53176							-0.04216834990734242
SRNSREVLI	9	Unmodified	_SRNSREVLI_					0	0	0			REV__ENST00000495532.1_1_6:32975562-32975865:-|nuORF	REV__ENST00000495532.1_1_6:32975562-32975865:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.3076782226562	2	537.306729	1072.59891	-0.52235	-0.00028066	-3.6624	-0.0019678	-4.1847	-0.0022485	537.3049555763375	68.628	1.9959	68.646	68.042	70.038	0.018913					159	51	5	0	0	0	0.1158	1	8097	8097		107.01	10.817	1	44073000	+		76164	28578	53089	53177	83915	83915					0.06551048594815256
SRNSVYNNFL	10	Unmodified	_SRNSVYNNFL_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.21466064453125	3	405.203522	1212.58874	0.34385	0.00013933	-2.0227	-0.00081962	-1.6789	-0.00068029	405.20252844200735	28.268	1.1163	28.268	27.58	28.696	0					44	27	2	0	0	0	0.03519	1	1670	1670		21.78	0	1	145860	+		76165	19879	53090	53178	83916	83916					-0.009055591304331756
SRNTFDPSLA	10	Unmodified	_SRNTFDPSLA_					0	0	0		nc|ENSG00000104218|Q1MSJ5-2|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1	nc|ENSG00000104218|Q1MSJ5-2|CSPP1	nc|ENSG00000104218|Q1MSJ5-2|CSPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3222045898438	2	554.275095	1106.53564	-0.050557	-2.8022E-05	-3.6355	-0.0020151	-3.6861	-0.0020431	554.272791229337	68.409	2.1553	68.409	67.719	69.874	0					73	55	2	0	0	0	0.03519	1	8159	8159		38.754	0	1	220050			76166	2553	53091	53179	83917	83917					-0.013369369130941777
SRNYTLKL	8	Unmodified	_SRNYTLKL_					0	0	0		CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.78802490234375	2	497.787641	993.56073	-0.032621	-1.6239E-05	-0.23265	-0.00011581	-0.26527	-0.00013205	497.78741323071387	56.929	0.92354	56.929	56.46	57.384	0					60	25	4	0	0	0	0.34573	1	6377	6377		104.75	16.992	1	5871200			76167	596	53092	53180	83918	83918					0.06369162680130103
SRNYTLKL	8	Unmodified	_SRNYTLKL_					0	0	0		CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7874755859375	2	497.787641	993.56073	-0.04445	-2.2127E-05	-0.26743	-0.00013312	-0.31188	-0.00015525	497.7874141971237	57.089	1.1951	56.925	56.275	57.471	-0.16431					65	32	3	0	0	0	0.28835	2	6365	6365;6377		116.9	20.713	1	5693700			76168	596	53092	53180	83919;83920	83919					0.06369162680130103
SRNYTLKL	8	Unmodified	_SRNYTLKL_					0	0	0		CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	CSTF1|p.D194N|1|0.11|ENSG00000101138|chr20:56397776-56397776|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.78802490234375	2	497.787641	993.56073	-0.092029	-4.5811E-05	-0.11736	-5.8422E-05	-0.20939	-0.00010423	497.7874846082097	56.798	0.96033	56.896	56.435	57.395	0.097893					67	26	4	0	0	0	0.28835	2	6283	6271;6283		116.9	22.366	1	6219400			76169	596	53092	53180	83921;83922	83922					0.06369162680130103
SRPAQKLV	8	Unmodified	_SRPAQKLV_					0	0	0		ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2239074707031	2	449.777077	897.5396	0.03228	1.4519E-05	-0.087664	-3.9429E-05	-0.055384	-2.491E-05	449.7769137794629	23.948	0.66643	24.024	23.561	24.228	0.076241					20	14	2	0	0	0	0.027866	1	910	910		24.203	0	1	72112			76170	10405	53093	53181	83923	83923					0.08673197371285823
SRPAWDFLL	9	Unmodified	_SRPAWDFLL_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7979736328125	2	552.795466	1103.57638	-0.61634	-0.00034071	1.9949	0.0011028	1.3786	0.00076206	553.2968913804991	57.945	0.17664	58.036	57.908	58.084	0.091217					6	4	2	0	0	0	0.024397	1	6443	6443		31.53	2.3803	1	177780	+		76171	28740	53094	53182	83924	83924					0.028734491971817988
SRPDAPLN	8	Unmodified	_SRPDAPLN_					0	0	0			REV__ENST00000261888.10_1_15:65578828-65579173:-|nuORF	REV__ENST00000261888.10_1_15:65578828-65579173:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7720031738281	2	435.227417	868.44028	-0.23107	-0.00010057	-2.8093	-0.0012227	-3.0404	-0.0013233	435.22666499667537	25.909	0.22006	25.909	25.823	26.043	0					5	4	2	0	0	0	0.027866	1	1261	1261		15.642	0	1	10192	+		76172	29641	53095	53183	83925	83925					0.0007975468651011397
SRPDLLPW	8	Unmodified	_SRPDLLPW_					0	0	0			REV__chr17:28534538-28534953|329|11.55|0.58|4.3|+|0|FOXN1,None|1	REV__chr17:28534538-28534953|329|11.55|0.58|4.3|+|0|FOXN1,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7813415527344	2	492.269084	982.523616	-0.12227	-6.0191E-05	-3.9832	-0.0019608	-4.1055	-0.002021	492.2669629574036	32.595	0.57023	32.658	32.352	32.923	0.062885					25	14	2	0	0	0	0.027866	1	2232	2232		26.796	0	1	349800	+		76173	19385	53096	53184	83926	83926					0.03165491134382137
SRPEGRSW	8	Unmodified	_SRPEGRSW_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4;nc|ENSG00000131435|P50479-2|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7435607910156	2	487.743765	973.472977	-0.63202	-0.00030826	0.25795	0.00012582	-0.37407	-0.00018245	487.74378335931016	29.665	0.84532	29.492	29.07	29.915	-0.17258					46	19	3	0	0	0	0.91956	1	1825	1825		49.442	1.7842	1	1588700			76174	4523	53097	53185	83927	83927					-0.014820381906133662
SRPEGRSW	8	Unmodified	_SRPEGRSW_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4;nc|ENSG00000131435|P50479-2|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7436218261719	2	487.743765	973.472977	0.085933	4.1913E-05	-0.35647	-0.00017387	-0.27054	-0.00013195	487.7434741509761	29.624	0.92389	29.475	29.044	29.967	-0.14952					61	21	4	0	0	0	0.80469	1	1824	1824		58.782	0	1	2003500			76175	4523	53097	53185	83928	83928					-0.014820381906133662
SRPELLQNL	9	Unmodified	_SRPELLQNL_					0	0	0			REV__ENSG00000110713|ENST00000324932|NUP98	REV__ENSG00000110713|ENST00000324932|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2695922851562	2	535.303655	1068.59276	-1.6974	-0.00090864	-2.5601	-0.0013704	-4.2575	-0.0022791	535.302407079259	29.4	0.62099	29.4	28.99	29.611	0					23	15	2	0	0	0	0.023837	1	1821	1821		74.255	0	1	133390	+		76176	21869	53098	53186	83929	83929					0.061205303632732466
SRPENWDL	8	Unmodified	_SRPENWDL_					0	0	0		ENST00000470236.1_1_3:136580587-136580677:-|nuORF;ENST00000474250.5_1_3:136577411-136580677:-|nuORF;ENST00000461864.5_1_3:136565388-136580677:-|nuORF	ENST00000470236.1_1_3:136580587-136580677:-|nuORF	ENST00000470236.1_1_3:136580587-136580677:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7695007324219	2	508.743431	1015.47231	-1.0755	-0.00054714	-4.0071	-0.0020386	-5.0825	-0.0025857	509.24368851957627	36.2	0.21336	36.158	36.067	36.28	-0.042458					8	5	2	0	0	0	0.027866	1	2845	2845		55.504	13.108	1	77273			76177	14692	53099	53187	83930	83930					-0.0348087763032936
SRPFLSLAV	9	Unmodified	_SRPFLSLAV_					0	0	0			REV__SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|14|2|sense	REV__SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|14|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.27484130859375	2	495.292559	988.570566	0.52486	0.00025996	-0.47464	-0.00023509	0.05022	2.4874E-05	495.29218514763625	72.082	0.75233	71.794	71.502	72.254	-0.28858					27	19	2	0	0	0	0.023837	1	8777	8777		74.255	4.6274	1	342380	+		76178	37607	53100	53188	83931	83931					0.07582350685515848
SRPFLSLAV	9	Unmodified	_SRPFLSLAV_					0	0	0			REV__SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|14|2|sense	REV__SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|14|2|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.292559	988.570566	0.7787	0.00038568	-0.13995	-6.9317E-05	0.63874	0.00031636	495.29245162608925	71.75	0.48752	71.75	71.453	71.94	0	-0.062503	-1.8874E-05	NaN	74.255	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334770	+		76179	37607	53100	53188							0.07582350685515848
SRPGAPVQ	8	Unmodified	_SRPGAPVQ_					0	0	0		ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	ENST00000299237.2_1_16:58031894-58032311:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2109680175781	2	406.224677	810.434801	-0.11249	-4.5697E-05	0.067292	2.7336E-05	-0.045199	-1.8361E-05	406.2246701597171	27.621	0.98901	27.453	27.142	28.132	-0.16816					47	23	3	0	0	0	0.027866	1	1494	1494		7.1934	0	1	489970			76180	11880	53101	53189	83932	83932					0.022000758947115173
SRPGLPKL	8	Unmodified	_SRPGLPKL_					0	0	0		ENST00000465315.1_1_2:131099168-131099453:-|nuORF	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	434.2745666503906	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.076	1	83.102	82.602	83.602	0.026558								0	0	0	0.66038	1	10304	10304		44.117	8.4985	1				76181	14777	53102	53190	83933	83933					0.09518098859598467
SRPGLPKL	8	Unmodified	_SRPGLPKL_					0	0	0		ENST00000465315.1_1_2:131099168-131099453:-|nuORF	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	ENST00000465315.1_1_2:131099168-131099453:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	434.2742614746094	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.099	1	82.96	82.46	83.46	-0.1386								0	0	0	0.66038	1	10011	10011		44.117	3.5442	1				76182	14777	53102	53190	83934	83934					0.09518098859598467
SRPGSAQSGA	10	Unmodified	_SRPGSAQSGA_					0	0	0			REV__ENST00000271688.10_1_1:150941549-150947423:-|nuORF	REV__ENST00000271688.10_1_1:150941549-150947423:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.2251892089844	2	459.225405	916.436257	-0.2029	-9.3177E-05	0.56229	0.00025822	0.35939	0.00016504	459.22547072127315	24.3	0.94491	24.125	23.743	24.688	-0.17484					52	21	3	0	0	0	0.60734	1	1051	1051		76.17	15.198	1	693750	+		76183	29806	53103	53191	83935	83935					-0.025303348071929577
SRPHPPILS	9	Unmodified	_SRPHPPILS_					0	0	0			REV__ENST00000586479.1_1_19:11462501-11464130:+|nuORF	REV__ENST00000586479.1_1_19:11462501-11464130:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2476806640625	2	502.287808	1002.56106	-0.40931	-0.00020559	-2.6264	-0.0013192	-3.0357	-0.0015248	502.2864975047256	61.147	0.63872	60.933	60.457	61.096	-0.2134					22	16	2	0	0	0	0.024436	1	7012	7012		23.042	2.0956	1	467580	+		76184	35600	53104	53192	83936	83936					0.05988582400004816
SRPHQVGI	8	Unmodified	_SRPHQVGI_					0	0	0			REV__ENST00000519857.5_1_8:38095628-38095688:+|nuORF	REV__ENST00000519857.5_1_8:38095628-38095688:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.761474609375	2	447.251226	892.487899	-0.48778	-0.00021816	0.56549	0.00025292	0.077717	3.4759E-05	447.25133724250793	25.405	0.58588	25.178	24.931	25.517	-0.22683					21	13	2	0	0	0	0.027866	1	1244	1244		18.324	0	1	476880	+		76185	34272	53105	53193	83937	83937					0.03735453677393252
SRPIDKWRW	9	Unmodified	_SRPIDKWRW_					0	0	0		ENST00000334062.7_1_13:114748460-114748754:-|nuORF	ENST00000334062.7_1_13:114748460-114748754:-|nuORF	ENST00000334062.7_1_13:114748460-114748754:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.7618713378906	3	415.228001	1242.66217	0.11962	4.967E-05	-2.8707	-0.001192	-2.7511	-0.0011423	415.2270197903824	110.04	0.85347	110.05	109.81	110.67	0.0059204					87	28	4	0	0	0	0.024541	1	13885	13885		4.3388	0	1	1461200			76186	12377	53106	53194	83938	83938					0.050550341027019385
SRPIGKLLN	9	Unmodified	_SRPIGKLLN_					0	0	0			REV__ENST00000508510.5_1_4:76620044-76649314:-|nuORF	REV__ENST00000508510.5_1_4:76620044-76649314:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.79571533203125	2	499.311284	996.608014	-0.81748	-0.00040818	0.53083	0.00026505	-0.28664	-0.00014312	499.3113828684384	58.294	0.58216	58.119	57.968	58.55	-0.1749					22	15	2	0	0	0	0.023837	1	6625	6625		74.255	5.4682	1	319620	+		76187	34067	53107	53195	83939	83939					0.10957441951131841
SRPIGKLLN	9	Unmodified	_SRPIGKLLN_					0	0	0			REV__ENST00000508510.5_1_4:76620044-76649314:-|nuORF	REV__ENST00000508510.5_1_4:76620044-76649314:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.311284	996.608014	-0.26561	-0.00013262	0.06628	3.3094E-05	-0.19933	-9.9527E-05	499.3111266231673	57.976	0.53624	58.067	57.797	58.333	0.091217	-0.035063	-4.1909E-05	NaN	74.255	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479610	+		76188	34067	53107	53195							0.10957441951131841
SRPIPKTVKSS	11	Unmodified	_SRPIPKTVKSS_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.5758361816406	3	400.575067	1198.70337	3.4318	0.0013747	-2.0208	-0.00080947	1.4111	0.00056524	400.57419817092705	17.949	1.391	17.706	17.478	18.869	-0.24256					53	27	4	0	0	0	1.044	1	232	232		26.75	2.5179	1	483170	+		76189	21614	53108	53196	83940	83940					0.11196750351541596
SRPKRSCCS	9	Unmodified	_SRPKRSCCS_					0	0	0		ENST00000306026.5_1_3:49155182-49156625:-|nuORF;ENST00000398898.6_1_3:49155182-49156625:-|nuORF	ENST00000306026.5_1_3:49155182-49156625:-|nuORF	ENST00000306026.5_1_3:49155182-49156625:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.810791015625	2	512.24476	1022.47497	-0.6552	-0.00033562	3.5048	0.0017953	2.8496	0.0014597	512.2464935475789	58.202	0.86841	58.027	57.755	58.623	-0.1749					35	23	2	0	0	0	0.024021	1	6578	6578		32.812	0	1	413190			76190	11995	53109	53197	83941	83941					-0.035370687686736346
SRPLAPIL	8	Unmodified	_SRPLAPIL_					0	0	0		nc|ENSG00000131650|Q8NCW0-4|KREMEN2	nc|ENSG00000131650|Q8NCW0-4|KREMEN2	nc|ENSG00000131650|Q8NCW0-4|KREMEN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.9141845703125	2	433.776545	865.538538	-0.18367	-7.9672E-05	0.46502	0.00020171	0.28135	0.00012204	433.77659021324513	41.672	0.57802	41.444	41.159	41.737	-0.2278					19	14	2	0	0	0	0.027866	1	3708	3708		35.201	0	1	118780			76191	18270	53110	53198	83942	83942					0.10038983002368695
SRPLCNGEHVL	11	Unmodified	_SRPLCNGEHVL_					0	0	0			REV__ENST00000310924.6_1_17:77913861-77913975:-|nuORF	REV__ENST00000310924.6_1_17:77913861-77913975:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2469787597656	3	408.87664	1223.60809	0.47965	0.00019612	-3.3283	-0.0013609	-2.8487	-0.0011648	408.87518600604983	37.751	0.21523	37.784	37.639	37.854	0.032269					6	5	2	0	0	0	0.024786	1	3056	3056		39.873	0	1	25489	+		76192	30196	53111	53199	83943	83943					0.005230738888258202
SRPLPKKS	8	Unmodified	_SRPLPKKS_					0	0	0		ENST00000347667.5_1_21:42648779-42649055:+|nuORF	ENST00000347667.5_1_21:42648779-42649055:+|nuORF	ENST00000347667.5_1_21:42648779-42649055:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.7975158691406	2	456.784902	911.55525	-0.28963	-0.0001323	0.43327	0.00019791	0.14365	6.5615E-05	456.7849721667988	28.046	0.63296	27.894	27.61	28.243	-0.15195					29	15	2	0	0	0	0.027866	1	1623	1623		26.693	0	1	434240			76193	12572	53112	53200	83944	83944					0.09593483888329501
SRPLPPQT	8	Unmodified	_SRPLPPQT_					0	0	0		ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENSG00000163362|ENST00000413687|INAVA	ENSG00000163362|ENST00000413687|INAVA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	447.761474609375	2	448.253434	894.492316	-0.45359	-0.00020332	2.5041	0.0011225	2.0505	0.00091917	448.25445856401257	25.611	0.28626	25.384	25.19	25.476	-0.22683					9	6	2	0	0	0	0.027866	1	1244	1244		10.265	0	1	62562			76194	7066	53113	53201	83945	83945					0.04084918100284085
SRPLSAAVVA	10	Unmodified	_SRPLSAAVVA_					0	0	0		ENST00000592447.5_1_18:11884980-11885840:-|nuORF	ENST00000592447.5_1_18:11884980-11885840:-|nuORF	ENST00000592447.5_1_18:11884980-11885840:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2487487792969	2	485.787641	969.56073	-0.6786	-0.00032966	3.232	0.00157	2.5534	0.0012404	485.7874846762614	26.198	0.096912	25.962	25.88	25.977	-0.23603					4	2	2	0	0	0	0.03519	1	1316	1316		47.657	15.702	1	68445			76195	17372	53114	53202	83946	83946					0.07473162680128098
SRPLSRLPG	9	Unmodified	_SRPLSRLPG_					0	0	0		ENSG00000161267|ENST00000392379|BDH1;ENST00000492681.1_1_3:197273230-197273314:-|nuORF;ENST00000468710.1_1_3:197265729-197273314:-|nuORF	ENSG00000161267|ENST00000392379|BDH1	ENSG00000161267|ENST00000392379|BDH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.7816162109375	2	491.793258	981.571963	-0.5365	-0.00026385	-0.42513	-0.00020908	-0.96163	-0.00047292	491.79302952251396	32.999	0.45987	32.999	32.827	33.287	0					13	11	2	0	0	0	0.024323	1	2331	2331		44.117	0	1	44851			76196	6869	53115	53203	83947	83947					0.08043984774280943
SRPLSVAIK	9	Unmodified	_SRPLSVAIK_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.77386474609375	2	485.805834	969.597115	-0.14693	-7.1381E-05	1.4798	0.00071888	1.3328	0.0006475	485.80572308409484	27.673	0.47395	27.431	27.207	27.68	-0.24217					24	10	3	0	0	0	0.024261	1	1525	1525		54.776	0	1	122830	+		76197	21099	53116	53204	83948	83948					0.11110039576840336
SRPLTPLVL	9	Unmodified	_SRPLTPLVL_					0	0	0		ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.8314514160156	2	498.316035	994.617516	-1.0351	-0.00051583	1.1543	0.00057522	0.1192	5.9398E-05	498.3160620017316	44.874	0.55157	44.725	44.422	44.974	-0.1488					26	15	2	0	0	0	0.024447	1	4247	4247		25.574	0	1	101260			76198	9165	53117	53205	83949	83949					0.11999210236660929
SRPLWVLS	8	Unmodified	_SRPLWVLS_					0	0	0		ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF	ENST00000462306.5_1_2:128047812-128051699:-|nuORF	ENST00000462306.5_1_2:128047812-128051699:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.30047607421875	2	479.279452	956.544351	0.019513	9.3521E-06	1.1713	0.0005614	1.1909	0.00057075	479.2796767353791	65.69	0.5858	65.727	65.389	65.975	0.037384					20	15	2	0	0	0	0.027866	1	7694	7694		30.504	1.3541	1	118280			76199	14703	53118	53206	83950	83950					0.0643408151404401
SRPPAQYWS	9	Unmodified	_SRPPAQYWS_					0	0	0		ENST00000575251.5_1_17:4060423-4060609:+|nuORF	ENST00000575251.5_1_17:4060423-4060609:+|nuORF	ENST00000575251.5_1_17:4060423-4060609:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.2655639648438	2	546.267073	1090.51959	-0.91987	-0.0005025	-2.6752	-0.0014614	-3.595	-0.0019638	546.265642390416	26.228	1.6264	25.992	25.803	27.429	-0.23603					107	41	4	0	0	0	0.86013	1	1321	1321		35.152	3.6222	1	26288000			76200	17097	53119	53207	83951	83951					-0.022045983593443452
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.7610168457031	2	443.760895	885.507237	-0.72391	-0.00032124	1.019	0.00045221	0.29513	0.00013097	443.7612346166442	62.692	0.92646	62.692	62.446	63.373	0					44	23	2	0	0	0	0.845	1	7310	7310		55.504	5.4797	1	2836300			76201	856;6182	53120	53208	83952	83952					0.05990409968296717
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.76123046875	2	443.760895	885.507237	-0.64594	-0.00028664	0.99021	0.00043942	0.34427	0.00015277	443.76118119629433	62.901	0.89368	62.662	62.419	63.312	-0.23926					38	22	2	0	0	0	0.845	2	7305	7305;7320		55.504	8.7378	1	2837000			76202	856;6182	53120	53208	83953;83954	83953					0.05990409968296717
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.7607727050781	2	443.760895	885.507237	0.077113	3.422E-05	0.20528	9.1094E-05	0.28239	0.00012531	443.7608294505285	62.645	1.0541	62.708	62.401	63.456	0.062767					44	26	2	0	0	0	0.94517	2	7220	7220;7232		45.952	1.4209	1	2910600			76203	856;6182	53120	53208	83955;83956	83955					0.05990409968296717
SRPPPAEGF	9	Unmodified	_SRPPPAEGF_					0	0	0		ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.24346923828125	2	479.243067	956.47158	0.64164	0.0003075	-0.45564	-0.00021836	0.186	8.9138E-05	479.2427582608405	40.445	1.3816	40.332	39.715	41.097	-0.11223					88	37	4	0	0	0	0.32811	1	3557	3557		71.877	2.2498	1	2871200			76204	10531	53121	53209	83957	83957					-0.008396722793804656
SRPPPAEGF	9	Unmodified	_SRPPPAEGF_					0	0	0		ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7798767089844	2	479.243067	956.47158	-0.55613	-0.00026652	0.65268	0.00031279	0.096549	4.6271E-05	479.24329504991545	40.535	0.95421	40.558	40.051	41.005	0.023003					70	26	4	0	0	0	0.024261	1	3500	3500		54.776	0	1	3071500			76205	10531	53121	53209	83958	83958					-0.008396722793804656
SRPPVRLN	8	Unmodified	_SRPPVRLN_					0	0	0		GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant;ENSG00000182771|ENST00000327946|GRID1	GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant	GRID1|p.V834Dfs*53|1|0.2|ENSG00000182771|chr10:85613507-85613508|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.76904296875	2	469.780151	937.545748	-0.44488	-0.000209	0.83832	0.00039382	0.39343	0.00018483	469.7803394614807	25.642	1.421	25.608	24.771	26.192	-0.034395					46	33	2	0	0	0	0.027866	1	1174	1174		11.511	0	1	169350			76206	9162	53122	53210	83959	83959					0.07447715602802418
SRPPVVTG	8	Unmodified	_SRPPVVTG_					0	0	0		ENST00000542075.5_1_17:79258951-79259371:-|nuORF	ENST00000542075.5_1_17:79258951-79259371:-|nuORF	ENST00000542075.5_1_17:79258951-79259371:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2032775878906	2	406.734877	811.455202	0.064297	2.6152E-05	0.30017	0.00012209	0.36447	0.00014824	406.73486049701273	22.375	0.93793	22.173	21.855	22.793	-0.20199					48	19	4	0	0	0	0.027866	1	823	823		11.511	0	1	918780			76207	16447	53123	53211	83960	83960					0.04193246554518737
SRPQHTRPS	9	Unmodified	_SRPQHTRPS_					0	0	0			REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2758178710938	2	533.281046	1064.54754	-0.018725	-9.9857E-06	3.2833	0.0017509	3.2646	0.001741	533.7835081107282	77.527	0.38651	77.265	77.099	77.485	-0.26202					11	8	2	0	0	0	0.024484	1	9196	9196		23.523	0	1	341620	+		76208	32342	53124	53212	83961	83961					0.017847246207338685
SRPQQGQT	8	Unmodified	_SRPQQGQT_					0	0	0			REV__ENST00000450704.1_1_9:46843779-46844187:+|nuORF	REV__ENST00000450704.1_1_9:46843779-46844187:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2637939453125	2	451.227948	900.441343	0.23745	0.00010714	-3.8071	-0.0017179	-3.5696	-0.0016107	451.2259969762544	60.965	0.64647	60.965	60.768	61.414	0					24	16	2	0	0	0	0.027866	1	7058	7058		14.137	3.8719	1	99581	+		76209	32707	53125	53213	83962	83962					-0.012860309445613893
SRPRGSSVS	9	Unmodified	_SRPRGSSVS_					0	0	0		FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant;FLG|p.S2719Rfs*26|1|0.08|ENSG00000143631|chr1:152306729-152306730|-/ACACC|frameshift_variant;FLG|p.Q3155Sfs*61|1|0.08|ENSG00000143631|chr1:152305423-152305423|G/-|frameshift_variant;ENSG00000143631|ENST00000368799|FLG;CON__P20930	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	FLG|p.V2707Tfs*38|1|0.08|ENSG00000143631|chr1:152306768-152306769|-/TCGTG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.2445983886719	2	466.749047	931.483542	-0.6616	-0.0003088	-2.0803	-0.000971	-2.742	-0.0012798	466.7471188901179	32.624	0.71645	32.624	32.379	33.096	0					26	18	2	0	0	0	0.024457	1	2325	2325		29.15	10.825	1	281830		+	76210	526	53126	53214	83963	83963					0.01505944463826836
SRPRKGQCL	9	Carbamidomethyl (C)	_SRPRKGQC(Carbamidomethyl (C))L_	SRPRKGQC(1)L		SRPRKGQC(80)L		0	1	0			REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF	REV__ENST00000528533.5_1_11:119181936-119187838:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.30078125	2	551.300924	1100.5873	-0.04747	-2.617E-05	-1.1508	-0.00063446	-1.1983	-0.00066063	551.3001461084996	70.414	1.312	70.157	69.768	71.08	-0.25713					69	33	4	0	0	0	0.26966	1	8194	8194		79.713	12.219	1	5831600	+		76211	20572	53127	53215	83964	83964	263				0.041025282998361945
SRPRPLLPI	9	Unmodified	_SRPRPLLPI_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.7843017578125	2	524.834926	1047.6553	-0.42739	-0.00022431	-0.50205	-0.00026349	-0.92944	-0.0004878	524.8345960732825	65.365	0.20283	65.114	64.986	65.189	-0.25112					6	4	2	0	0	0	0.024427	1	7455	7455		42.396	0	1	32383	+		76212	24332	53128	53216	83965	83965					0.13337721222137588
SRPRQGVG	8	Unmodified	_SRPRQGVG_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|75|2|anti-sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|75|2|anti-sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|75|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.2364501953125	2	428.741025	855.467498	-0.30026	-0.00012873	3.8673	0.0016581	3.5671	0.0015294	428.7426102600883	64.399	0.55194	64.136	63.827	64.379	-0.2626					19	14	2	0	0	0	0.027866	1	7503	7503		15.642	0	1	153690			76213	38030	53129	53217	83966	83966					0.033982830175773415
SRPRSPNDL	9	Unmodified	_SRPRSPNDL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;nc|ENSG00000130508|Q92626-2|PXDN;ENST00000478155.5_1_2:1648438-1667521:-|nuORF	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.3063354492188	2	521.275429	1040.53631	-0.88241	-0.00045998	3.7826	0.0019718	2.9002	0.0015118	521.2771807888331	52.847	0.33796	52.847	52.711	53.049	0					11	8	2	0	0	0	0.024405	1	5714	5714		35.618	8.8222	1	77741			76214	4424	53130	53218	83967	83967					0.0176590252663118
SRPRSPNDL	9	Unmodified	_SRPRSPNDL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;nc|ENSG00000130508|Q92626-2|PXDN;ENST00000478155.5_1_2:1648438-1667521:-|nuORF	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.275429	1040.53631	-0.30119	-0.000157	3.3399	0.001741	3.0387	0.001584	521.2765127866373	52.964	0.22821	52.817	52.682	52.91	-0.14723	-0.025939	-0.001059	NaN	60.118	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74641			76215	4424	53130	53218							0.0176590252663118
SRPRSPNDL	9	Unmodified	_SRPRSPNDL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;nc|ENSG00000130508|Q92626-2|PXDN;ENST00000478155.5_1_2:1648438-1667521:-|nuORF	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.275429	1040.53631	-0.061848	-3.224E-05	6.7261	0.0035062	6.6643	0.0034739	521.7802967264721	52.772	0.33833	52.864	52.638	52.976	0.091942	0.021775	0.0024714	NaN	60.118	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95597			76216	4424	53130	53218							0.0176590252663118
SRPSILYAI	9	Unmodified	_SRPSILYAI_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8439025878906	2	510.297842	1018.58113	-0.49221	-0.00025117	-2.7673	-0.0014121	-3.2595	-0.0016633	510.29567603597735	76.912	0.81316	76.684	76.081	76.894	-0.22844					35	19	4	0	0	0	0.024288	1	9473	9473		36.447	4.9169	1	158540	+		76217	20469	53131	53219	83968	83968					0.07258333339962064
SRPSPRSH	8	Unmodified	_SRPSPRSH_					0	0	0			REV__ENST00000591863.1_2_19:33461934-33462189:-|nuORF	REV__ENST00000591863.1_2_19:33461934-33462189:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.30572509765625	2	462.243932	922.473312	-0.10019	-4.6314E-05	0.78652	0.00036356	0.68632	0.00031725	462.24420346556235	66.373	0.26851	66.092	65.904	66.173	-0.28149					10	6	2	0	0	0	0.027866	1	7878	7878		7.1934	0	1	115200	+		76218	35733	53132	53220	83969	83969					0.008973815292392828
SRPTPVVFSE	10	Unmodified	_SRPTPVVFSE_					0	0	0		nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;ENST00000480825.6_1_1:36934562-36937301:-|nuORF;ENST00000487540.6_1_1:36933583-36937977:-|nuORF;ENST00000464365.2_1_1:36934562-36941005:-|nuORF	nc|ENSG00000119535|Q99062-2|CSF3R	nc|ENSG00000119535|Q99062-2|CSF3R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.7777099609375	2	559.795663	1117.57677	-0.35043	-0.00019617	-3.9178	-0.0021931	-4.2682	-0.0023893	560.2948061803075	29.712	0.45502	29.563	29.337	29.792	-0.14952					12	10	2	0	0	0	0.03519	1	1813	1813		39.253	12.56	1	55002			76219	3744	53133	53221	83970	83970					0.022688241263722375
SRPTRGALLP	10	Unmodified	_SRPTRGALLP_					0	0	0			REV__nc|ENSG00000160131|Q3ZAQ7-2|VMA21	REV__nc|ENSG00000160131|Q3ZAQ7-2|VMA21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2611694335938	2	534.31964	1066.62473	-0.56589	-0.00030237	3.7329	0.0019946	3.1671	0.0016922	534.3219784888759	24.388	0.33618	24.213	24.089	24.425	-0.17484					11	7	2	0	0	0	0.03519	1	1065	1065		58.23	12.278	1	52795	+		76220	36832	53134	53222	83971	83971					0.09407942837083283
SRPVFTPSV	9	Unmodified	_SRPVFTPSV_					0	0	0			REV__ENST00000557237.1_1_14:67708427-67708655:+|nuORF	REV__ENST00000557237.1_1_14:67708427-67708655:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.27484130859375	2	495.274367	988.53418	0.70349	0.00034842	-0.4545	-0.0002251	0.24899	0.00012332	495.274005872249	72.494	0.69901	72.213	71.807	72.506	-0.28124					53	17	4	0	0	0	0.56934	1	8777	8777		54.776	1.4249	1	2212400	+		76221	35063	53135	53223	83972	83972					0.03945473788803611
SRPVLDKQT	9	Unmodified	_SRPVLDKQT_					0	0	0			REV__nc|ENSG00000236311|P0CAT3|TLX1NB	REV__nc|ENSG00000236311|P0CAT3|TLX1NB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2581787109375	2	522.29583	1042.57711	-0.084516	-4.4142E-05	-0.22635	-0.00011822	-0.31086	-0.00016236	522.2957974326436	24.083	0.54148	24.161	23.868	24.41	0.078344					12	7	2	0	0	0	0.024466	1	964	964		24.519	3.5723	1	103430	+		76222	37154	53136	53224	83973	83973					0.057522438462456194
SRPWPDRQWG	10	Unmodified	_SRPWPDRQWG_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.9346008300781	3	428.879261	1283.61595	-0.69583	-0.00029843	2.8582	0.0012258	2.1624	0.00092741	428.88051202429597	28.47	0.52697	28.225	27.921	28.448	-0.24524					24	12	3	0	0	0	0.03519	1	1661	1661		36.318	8.764	1	163580			76223	5081	53137	53225	83974	83974					-0.0145103079942146
SRPYFHWRGNN	11	Unmodified	_SRPYFHWRGNN_					0	0	0		ENST00000421085.6_1_X:10205372-10205696:+|nuORF	ENST00000421085.6_1_X:10205372-10205696:+|nuORF	ENST00000421085.6_1_X:10205372-10205696:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7688293457031	3	478.565565	1432.67486	-0.22044	-0.00010549	-1.1858	-0.00056748	-1.4062	-0.00067298	478.5649701374729	28.623	0.72027	28.618	28.199	28.92	-0.0042					31	16	2	0	0	0	0.024789	1	1641	1641		7.6794	0	1	144590			76224	13991	53138	53226	83975	83975					-0.02416554505066415
SRQACPRR	8	Unmodified	_SRQACPRR_					0	0	0			REV__ENST00000551566.1_1_12:56660746-56661725:+|nuORF	REV__ENST00000551566.1_1_12:56660746-56661725:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7767028808594	2	487.259059	972.503566	-1.6222	-0.00079041	1.4813	0.00072179	-0.14085	-6.8629E-05	487.2606934104063	38.062	0.31268	38.089	37.849	38.162	0.027279					20	8	3	0	0	0	0.027866	1	3092	3092		38.806	17.859	1	158750	+		76225	34937	53139	53227	83976	83976					0.01621416922773733
SRQALKVL	8	Unmodified	_SRQALKVL_					0	0	0		nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;ENST00000475319.1_1_6:127611016-127636085:-|nuORF	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-3|ECHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7519836425781	2	457.792727	913.5709	-0.43902	-0.00020098	0.74674	0.00034185	0.30772	0.00014087	457.79288235223123	30.068	0.45103	30.077	29.922	30.373	0.0086689					19	10	2	0	0	0	0.027866	1	1865	1865		18.324	0	1	120570			76226	2005	53140	53228	83977	83977					0.11065770405377862
SRQAWPTL	8	Unmodified	_SRQAWPTL_					0	0	0		nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF	nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7351989746094	2	479.758884	957.503215	1.6737	0.00080295	4.1144	0.0019739	5.7881	0.0027769	479.76112092858517	59.829	0.23965	59.829	59.711	59.951	0					10	6	2	0	0	0	0.027866	1	6841	6841		40.778	0	1	322340			76227	8002	53141	53229	83978	83978					0.022763204745729126
SRQDFKTAV	9	Unmodified	_SRQDFKTAV_					0	0	0		EFCAB11|p.E41Q|1|0.23|ENSG00000140025|chr14:89953956-89953956|C/G|missense_variant	EFCAB11|p.E41Q|1|0.23|ENSG00000140025|chr14:89953956-89953956|C/G|missense_variant	EFCAB11|p.E41Q|1|0.23|ENSG00000140025|chr14:89953956-89953956|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7659912109375	2	526.28018	1050.54581	0.68499	0.0003605	-1.7184	-0.00090435	-1.0334	-0.00054385	526.2792025443986	33.277	0.21621	33.333	33.245	33.461	0.056572					8	5	2	0	0	0	0.024397	1	2347	2347		39.253	7.723	1	33708			76228	684	53142	53230	83979	83979					0.022556708121328484
SRQDLQVHQ	9	Unmodified	_SRQDLQVHQ_					0	0	0			REV__nc|ENSG00000125826|Q9BYM8-3|RBCK1	REV__nc|ENSG00000125826|Q9BYM8-3|RBCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.7689819335938	2	555.786161	1109.55777	-0.65069	-0.00036165	0.46858	0.00026043	-0.18212	-0.00010122	555.786208685766	38.117	0.29392	37.937	37.876	38.17	-0.17929					17	8	4	0	0	0	0.024319	1	3161	3161		66.429	29.27	1	473000	+		76229	22847	53143	53231	83980	83980					0.007372875553301128
SRQDRRVL	8	Unmodified	_SRQDRRVL_					0	0	0			REV__ENST00000535606.1_1_12:32112753-32113746:+|nuORF	REV__ENST00000535606.1_1_12:32112753-32113746:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2825317382812	2	515.299239	1028.58392	-0.29114	-0.00015003	1.122	0.00057814	0.83081	0.00042812	515.3005313014526	65.754	0.30916	65.481	65.297	65.606	-0.27282					14	8	2	0	0	0	0.027866	1	7787	7787		38.806	0	1	601460	+		76230	34676	53144	53232	83981	83981					0.07077601517471521
SRQELLMEL	9	Unmodified	_SRQELLMEL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.83203125	2	559.797349	1117.58014	-0.14739	-8.2508E-05	3.6744	0.0020569	3.527	0.0019744	559.7992484840979	73.104	0.70107	73.114	72.818	73.519	0.0096512					33	17	3	0	0	0	0.024477	1	8798	8798		35.618	7.736	1	931490	+		76231	22073	53145	53233	83982	83982					0.02605750908742266
SRQERVCNI	9	Unmodified	_SRQERVCNI_					0	0	0		nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF	nc|ENSG00000138798|P01133-2|EGF	nc|ENSG00000138798|P01133-2|EGF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.2645874023438	2	552.782564	1103.55058	0.76107	0.0004207	-0.27272	-0.00015075	0.48835	0.00026995	552.7817077691093	36.988	0.56073	36.779	36.323	36.883	-0.2092					13	13	2	0	0	0	0.024427	1	2881	2881		19.997	0	1	53002			76232	5288	53146	53234	83983	83983					0.0029423168325592997
SRQFFSPPND	10	Unmodified	_SRQFFSPPND_					0	0	0			REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.2647094726562	2	597.780544	1193.54654	-0.75469	-0.00045114	0.13537	8.092E-05	-0.61932	-0.00037022	597.7805216310995	42.77	0.68947	42.544	42.336	43.025	-0.22597					34	17	3	0	0	0	0.03519	1	3922	3922		24.519	4.5224	1	770720	+		76233	28976	53147	53235	83984	83984					-0.042495345388033456
SRQGAAAKGF	10	Unmodified	_SRQGAAAKGF_					0	0	0			REV__SPIN3|p.W68*|1|0.37|ENSG00000204271|chrX:56994744-56994744|C/-|frameshift_variant	REV__SPIN3|p.W68*|1|0.37|ENSG00000204271|chrX:56994744-56994744|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7416687011719	2	496.76724	991.519927	-1.1061	-0.00054947	-1.67	-0.00082958	-2.7761	-0.0013791	496.7669989047512	26.27	0.16052	26.107	26.038	26.199	-0.16331					6	4	2	0	0	0	0.03519	1	1308	1308		41.427	18.384	1	60574	+		76234	28582	53148	53236	83985	83985					0.02382821360527032
SRQGAAAKGF	10	Unmodified	_SRQGAAAKGF_					0	0	0			REV__SPIN3|p.W68*|1|0.37|ENSG00000204271|chrX:56994744-56994744|C/-|frameshift_variant	REV__SPIN3|p.W68*|1|0.37|ENSG00000204271|chrX:56994744-56994744|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.76724	991.519927	-0.17937	-8.9103E-05	0.29381	0.00014595	0.11444	5.6851E-05	496.7669481292911	26.001	0.75878	26.001	25.445	26.203	0	-0.024445	0.00017856	NaN	41.427	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74459	+		76235	28582	53148	53236							0.02382821360527032
SRQGAAAKGF	10	Unmodified	_SRQGAAAKGF_					0	0	0			REV__SPIN3|p.W68*|1|0.37|ENSG00000204271|chrX:56994744-56994744|C/-|frameshift_variant	REV__SPIN3|p.W68*|1|0.37|ENSG00000204271|chrX:56994744-56994744|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.76724	991.519927	0.31324	0.00015561	0.48424	0.00024055	0.79747	0.00039616	496.7668851398152	25.889	0.71143	25.969	25.418	26.13	0.08009	-0.056452	0.00036776	NaN	41.427	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61404	+		76236	28582	53148	53236							0.02382821360527032
SRQHYELEYRH	11	Unmodified	_SRQHYELEYRH_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7563171386719	3	506.579651	1516.71712	-0.61741	-0.00031277	-4.4636	-0.0022612	-5.081	-0.0025739	506.9114359605593	34.806	0.18745	34.856	34.723	34.91	0.050255					6	4	2	0	0	0	0.02484	1	2554	2554		17.167	4.2093	1	35355			76237	4285	53149	53237	83986	83986					-0.020566238873470866
SRQKQEVAK	9	Unmodified	_SRQKQEVAK_					0	0	0			REV__nc|ENSG00000107789|Q9UNW1-4|MINPP1	REV__nc|ENSG00000107789|Q9UNW1-4|MINPP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7069091796875	2	537.306729	1072.59891	-0.48055	-0.0002582	3.7946	0.0020389	3.3141	0.0017807	537.3087360430776	56.58	0.96619	56.413	56.001	56.967	-0.1672					58	24	5	0	0	0	0.024288	1	6173	6173		62.107	14.45	1	524820	+		76238	21686	53150	53238	83987	83987					0.06551048594792519
SRQKQSPP	8	Unmodified	_SRQKQSPP_					0	0	0		ENST00000437626.5_1_21:46548444-46591585:+|nuORF	ENST00000437626.5_1_21:46548444-46591585:+|nuORF	ENST00000437626.5_1_21:46548444-46591585:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7762451171875	2	464.253966	926.493378	0.026992	1.2531E-05	-3.0484	-0.0014152	-3.0214	-0.0014027	464.2525910421053	49.648	0.86935	49.368	49.123	49.992	-0.27977					34	22	2	0	0	0	0.027866	1	4981	4981		30.318	4.7437	1	609510			76239	14298	53151	53239	83988	83988					0.027191324691898444
SRQKQSPP	8	Unmodified	_SRQKQSPP_					0	0	0		ENST00000437626.5_1_21:46548444-46591585:+|nuORF	ENST00000437626.5_1_21:46548444-46591585:+|nuORF	ENST00000437626.5_1_21:46548444-46591585:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.253966	926.493378	-0.026447	-1.2278E-05	-2.739	-0.0012716	-2.7655	-0.0012839	464.25272472556145	49.394	0.75631	49.294	49.068	49.825	-0.1008	-0.043292	0.00023948	NaN	40.058	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445390			76240	14298	53151	53239							0.027191324691898444
SRQKQSPP	8	Unmodified	_SRQKQSPP_					0	0	0		ENST00000437626.5_1_21:46548444-46591585:+|nuORF	ENST00000437626.5_1_21:46548444-46591585:+|nuORF	ENST00000437626.5_1_21:46548444-46591585:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.253966	926.493378	0.13478	6.2573E-05	-3.2324	-0.0015006	-3.0976	-0.0014381	464.25265770627885	49.53	0.74698	49.349	49.154	49.901	-0.18071	0.012325	-0.00021856	NaN	40.058	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492330			76241	14298	53151	53239							0.027191324691898444
SRQKRLSGP	9	Unmodified	_SRQKRLSGP_					0	0	0			REV__nc|ENSG00000133083|O15075-3|DCLK1	REV__nc|ENSG00000133083|O15075-3|DCLK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8175048828125	2	514.801614	1027.58868	0.15115	7.7814E-05	1.7137	0.00088219	1.8648	0.00096001	514.8024365147568	73.108	0.86337	72.831	72.551	73.414	-0.27747					62	21	4	0	0	0	0.024319	1	8846	8846		31.53	0	1	899120	+		76242	23346	53152	53240	83989	83989					0.0759848566024175
SRQLCRRGLFR	11	Unmodified	_SRQLCRRGLFR_					0	0	0			REV__ENST00000591952.5_1_17:76183467-76187114:+|nuORF	REV__ENST00000591952.5_1_17:76183467-76187114:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7951354980469	3	464.598211	1390.7728	-0.30506	-0.00014173	-0.016028	-7.4464E-06	-0.32109	-0.00014918	464.59812230184656	55.367	0.67364	55.465	55.183	55.856	0.098015					32	17	2	0	0	0	0.024834	1	6029	6029		8.7993	0	1	528740	+		76243	35735	53153	53241	83990	83990					0.09304930819280344
SRQLDKTL	8	Unmodified	_SRQLDKTL_					0	0	0			REV__nc|ENSG00000121152|Q15003-2|NCAPH	REV__nc|ENSG00000121152|Q15003-2|NCAPH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.7772216796875	2	480.777274	959.539994	-0.85034	-0.00040882	0.5282	0.00025395	-0.32214	-0.00015488	480.7775011475017	27.6	1.002	27.431	26.766	27.768	-0.16816					71	23	5	0	0	0	0.68164	1	1527	1527		68.787	0	1	5196700	+		76244	22583	53154	53242	83991	83991					0.0586057230049164
SRQLSTAVK	9	Unmodified	_SRQLSTAVK_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.765625	2	495.290548	988.566543	0.58854	0.0002915	2.6308	0.001303	3.2194	0.0015945	495.2915764024943	42.157	0.3354	42.157	42.02	42.355	0					14	9	2	0	0	0	0.024405	1	3855	3855		27.882	1.1893	1	133510	+		76245	36693	53155	53243	83992	83992					0.07180261191808768
SRQLSVKID	9	Unmodified	_SRQLSVKID_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3033447265625	2	523.303655	1044.59276	-0.30343	-0.00015878	-0.91784	-0.00048031	-1.2213	-0.00063909	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.82115	1	11163	11163		37.812	0.65241	1	11993000	+		76246	28470	53156	53244	83993	83993					0.07224530363282611
SRQPAALLL	9	Unmodified	_SRQPAALLL_					0	0	0		ENST00000324225.8_1_11:117049569-117049740:+|nuORF	ENST00000324225.8_1_11:117049569-117049740:+|nuORF	ENST00000324225.8_1_11:117049569-117049740:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7981872558594	2	484.798009	967.581465	1.4645	0.00071001	-2.4093	-0.001168	-0.94471	-0.00045799	484.79704870638415	59.05	1.5265	58.863	58.5	60.027	-0.18705					126	41	5	0	0	0	0.77768	1	6694	6694		40.778	1.972	1	119110000			76247	12251	53157	53245	83994	83994					0.09637753059814713
SRQPAQAL	8	Unmodified	_SRQPAQAL_					0	0	0			REV__ENST00000406638.6_1_11:1892044-1892302:+|nuORF	REV__ENST00000406638.6_1_11:1892044-1892302:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.891357421875	2	435.743234	869.471915	-0.44804	-0.00019523	2.237	0.00097477	1.789	0.00077954	435.7441190801769	64.736	0.59718	64.501	64.373	64.971	-0.2345					19	14	2	0	0	0	0.027866	1	7429	7429		11.511	0	1	136760	+		76248	31924	53158	53246	83995	83995					0.03195747440474861
SRQPSLLHY	9	Unmodified	_SRQPSLLHY_					0	0	0		nc|ENSG00000013619|Q13495-3|MAMLD1;nc|ENSG00000013619|Q13495-4|MAMLD1;ENSG00000013619|ENST00000370401|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2757568359375	2	550.795998	1099.57744	-0.4424	-0.00024367	2.4189	0.0013323	1.9765	0.0010886	551.2985050632652	50.185	1.4084	50.034	49.708	51.116	-0.1512					57	40	3	0	0	0	0.024487	1	5369	5369		24.203	0	1	349480			76249	18035	53159	53247	83996	83996					0.031636635661016044
SRQRAPLP	8	Unmodified	_SRQRAPLP_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7725524902344	2	462.772326	923.530098	-0.45765	-0.00021179	-0.66082	-0.00030581	-1.1185	-0.0005176	462.7721200636258	23.276	1.6306	23.215	22.097	23.727	-0.06086					124	36	5	0	0	0	0.93274	1	938	938		47.916	1.9636	1	26985000			76250	10106	53160	53248	83997	83997					0.0652742908575874
SRQRAPLP	8	Unmodified	_SRQRAPLP_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.7720031738281	2	462.772326	923.530098	0.057704	2.6704E-05	-1.3148	-0.00060846	-1.2571	-0.00058176	462.7718333719379	23.177	1.607	23.253	22.127	23.734	0.076241					117	35	4	0	0	0	0.93274	1	838	838		47.916	0	1	26362000			76251	10106	53160	53248	83998	83998					0.0652742908575874
SRQRIISP	8	Unmodified	_SRQRIISP_					0	0	0			REV__ENST00000544732.5_1_12:22257113-22403677:-|nuORF	REV__ENST00000544732.5_1_12:22257113-22403677:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.771484375	2	478.785433	955.556313	-0.098414	-4.7119E-05	-0.40572	-0.00019425	-0.50414	-0.00024137	478.7854067205477	88.695	0.87819	88.563	88.318	89.197	-0.13135					33	20	3	0	0	0	0.027866	1	10822	10822		58.782	0	1	171430	+		76252	34812	53161	53249	83999	83999					0.07675698257230579
SRQRIISP	8	Unmodified	_SRQRIISP_					0	0	0			REV__ENST00000544732.5_1_12:22257113-22403677:-|nuORF	REV__ENST00000544732.5_1_12:22257113-22403677:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7713928222656	2	478.785433	955.556313	0.28482	0.00013637	-0.63368	-0.0003034	-0.34886	-0.00016703	478.78502736086693	88.673	0.87494	88.535	88.357	89.232	-0.13744					26	20	2	0	0	0	0.027866	1	10795	10795		54.776	8.8041	1	124110	+		76253	34812	53161	53249	84000	84000					0.07675698257230579
SRQSLCLLL	9	Unmodified	_SRQSLCLLL_					0	0	0			REV__ENST00000464295.5_2_3:119962976-119963186:-|nuORF	REV__ENST00000464295.5_2_3:119962976-119963186:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2705688476562	2	516.797152	1031.57975	-0.11411	-5.8971E-05	-1.7696	-0.00091454	-1.8837	-0.00097351	516.7960679852536	51.48	1.1657	51.48	50.92	52.085	0					63	32	2	0	0	0	0.024319	1	5423	5423		39.253	0	1	765110	+		76254	32968	53162	53250	84001	84001					0.06522375979557182
SRQTSCPL	8	Unmodified	_SRQTSCPL_					0	0	0		ENST00000464298.5_1_2:85921549-85922470:+|nuORF	ENST00000464298.5_1_2:85921549-85922470:+|nuORF	ENST00000464298.5_1_2:85921549-85922470:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.7455749511719	2	446.221277	890.428001	-0.18712	-8.3495E-05	-3.1128	-0.001389	-3.2999	-0.0014725	446.2198584467551	24.58	0.4647	24.405	24.089	24.554	-0.17484					23	10	4	0	0	0	0.027866	1	1089	1089		18.324	0	1	209380			76255	14756	53163	53251	84002	84002					-0.02159605048177582
SRQVRPAF	8	Unmodified	_SRQVRPAF_					0	0	0		ENST00000569127.1_1_16:19079318-19079372:+|nuORF	ENST00000569127.1_1_16:19079318-19079372:+|nuORF	ENST00000569127.1_1_16:19079318-19079372:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7690734863281	2	480.772326	959.530098	0.53289	0.0002562	-1.5274	-0.00073435	-0.99456	-0.00047816	480.77125660103735	41.231	0.63464	41.231	40.944	41.579	0					27	17	2	0	0	0	0.027866	1	3701	3701		11.511	0	1	221820			76256	16999	53164	53252	84003	84003					0.04871429085756063
SRRALKAPD	9	Unmodified	_SRRALKAPD_					0	0	0			REV__ENSG00000089902|ENST00000262241|RCOR1	REV__ENSG00000089902|ENST00000262241|RCOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.77880859375	2	507.296165	1012.57778	0.48393	0.0002455	3.6665	0.00186	4.1505	0.0021055	507.29854620433224	98.888	0.70438	98.884	98.596	99.3	-0.0038834					24	15	2	0	0	0	0.024405	1	12553	12553		27.882	0	1	63050	+		76257	20865	53165	53253	84004	84004					0.07199083285945562
SRRAPSFPY	9	Unmodified	_SRRAPSFPY_					0	0	0		nc|ENSG00000101892|Q9UN42-2|ATP1B4;ENSG00000101892|ENST00000218008|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	nc|ENSG00000101892|Q9UN42-2|ATP1B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	540.78289	1079.55123	-1.3689	-0.00074029	-0.87866	-0.00047517	-2.2476	-0.0012155	540.7832109335433	59.849	0.32657	59.927	59.685	60.011	0.078888					10	8	2	0	0	0	0.024427	1	6755	6755		42.396	19.354	1	89547			76258	2357	53166	53254	84005	84005					0.014633943946137151
SRRARGKQA	9	Unmodified	_SRRARGKQA_					0	0	0			REV__ENSG00000130307|ENST00000252597|USHBP1	REV__ENSG00000130307|ENST00000252597|USHBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2822875976562	2	515.304855	1028.59516	-0.8343	-0.00042992	3.7904	0.0019532	2.9561	0.0015233	515.3066523344266	32.187	0.8027	32.25	32.003	32.806	0.062885					27	13	3	0	0	0	0.024527	1	2246	2246		39.253	11.371	1	343870	+		76259	23103	53167	53255	84006	84006					0.08200423611606311
SRRASPRRPR	10	Unmodified	_SRRASPRRPR_					0	0	0			REV__ENST00000322313.8_1_2:128459548-128459872:-|nuORF	REV__ENST00000322313.8_1_2:128459548-128459872:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8697509765625	2	619.868686	1237.72282	-0.66004	-0.00040914	1.8559	0.0011504	1.1958	0.00074125	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.1197	1	11672	11672		20.947	1.8434	1	5229800	+		76260	30361	53168	53256	84007	84007					0.11346564205632603
SRRAVLCI	8	Unmodified	_SRRAVLCI_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.26116943359375	2	459.271104	916.527655	-0.13605	-6.2484E-05	-3.3435	-0.0015356	-3.4795	-0.001598	459.2694778024499	27.813	0.72774	27.895	27.684	28.411	0.081293					21	17	2	0	0	0	0.027866	1	1526	1526		53.351	0	1	127150			76261	5012	53169	53257	84008	84008					0.0660525735642068
SRRAVLCI	8	Unmodified	_SRRAVLCI_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	459.271104	916.527655	-0.18722	-8.5987E-05	-2.5248	-0.0011596	-2.712	-0.0012456	459.2696453279547	27.834	0.64458	27.682	27.395	28.04	-0.15195	-0.10611	0.00045303	NaN	53.351	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57893			76262	5012	53169	53257							0.0660525735642068
SRRELCLA	8	Unmodified	_SRRELCLA_					0	0	0		ENST00000492742.5_1_21:44269525-44269681:-|nuORF	ENST00000492742.5_1_21:44269525-44269681:-|nuORF	ENST00000492742.5_1_21:44269525-44269681:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2702331542969	2	474.258194	946.501834	0.56811	0.00026943	-0.41037	-0.00019462	0.15774	7.4808E-05	474.2573600912835	24.928	0.22232	25.006	24.869	25.091	0.078344					6	4	2	0	0	0	0.027866	1	1087	1087		33.516	1.5607	1	17540			76263	15488	53170	53258	84009	84009					0.026443631141546575
SRREPRSL	8	Unmodified	_SRREPRSL_					0	0	0		CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant;ENSG00000157782|ENST00000316803|CABP1	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	CABP1|p.D356Mfs*12|1|0.15|ENSG00000157782|chr12:120661194-120661194|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.79205322265625	2	500.785964	999.557376	-0.61164	-0.0003063	-3.1455	-0.0015752	-3.7571	-0.0018815	500.78426750779363	29.348	0.6395	29.176	28.893	29.533	-0.17258					31	14	3	0	0	0	0.027866	1	1807	1807		19.104	0	1	607410			76264	201	53171	53259	84010	84010					0.05757912626131656
SRRFLFHFH	9	Unmodified	_SRRFLFHFH_					0	0	0			REV__ENST00000382214.7_1_20:388725-389346:+|nuORF	REV__ENST00000382214.7_1_20:388725-389346:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8951110839844	3	416.224591	1245.65194	0.11597	4.8269E-05	-2.6516	-0.0011037	-2.5356	-0.0010554	416.2235178569603	30.656	0.83061	30.507	30.14	30.971	-0.14952					31	19	2	0	0	0	0.024466	1	1926	1926		18.262	0	1	132400	+		76265	31538	53172	53260	84011	84011					0.038944711681324407
SRRFPYID	8	Unmodified	_SRRFPYID_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2769165039062	2	527.277441	1052.54033	-0.14535	-7.664E-05	-4.1914	-0.00221	-4.3367	-0.0022867	527.2751535991243	95.107	0.56452	95.11	94.782	95.347	0.0033722					19	12	2	0	0	0	0.027866	1	12029	12029		26.693	0	1	103380	+		76266	24332	53173	53261	84012	84012					0.016159920203108413
SRRFRRSP	8	Unmodified	_SRRFRRSP_					0	0	0			REV__RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	REV__RCSD1|p.K337Sfs*8|1|0.31|ENSG00000198771|chr1:167697632-167697635|AAAG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.7637329101562	2	531.307398	1060.60024	0.26918	0.00014302	-2.0314	-0.0010793	-1.7622	-0.00093627	531.3060045811367	82.037	1.4814	81.808	80.857	82.338	-0.2289					55	34	3	0	0	0	0.027866	1	9850	9850		47.916	1.9636	1	321550	+		76267	28472	53174	53262	84013	84013					0.07236727474241889
SRRGAGPV	8	Unmodified	_SRRGAGPV_					0	0	0		ENST00000234961.6_1_1:29189855-29190113:+|nuORF	ENST00000234961.6_1_1:29189855-29190113:+|nuORF	ENST00000234961.6_1_1:29189855-29190113:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.89947509765625	2	400.230294	798.446034	2.7538	0.0011022	-4.484	-0.0017946	-1.7302	-0.00069248	400.229427144418	54.764	0.14709	54.862	54.733	54.881	0.098015					5	3	2	0	0	0	0.027866	1	5922	5922		11.511	1.2458	1	51958			76268	11254	53175	53263	84014	84014					0.03874897988862358
SRRGERRE	8	Unmodified	_SRRGERRE_					0	0	0		ENST00000326840.10_1_3:98620336-98620486:-|nuORF	ENST00000326840.10_1_3:98620336-98620486:-|nuORF	ENST00000326840.10_1_3:98620336-98620486:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2584228515625	2	523.28412	1044.55369	0.1885	9.8639E-05	1.9636	0.0010275	2.1521	0.0011262	523.2847838684066	24.63	0.45819	24.708	24.501	24.959	0.078344					15	9	2	0	0	0	0.027866	1	1027	1027		30.504	0	1	83515			76269	12286	53176	53264	84015	84015					0.03319242852262505
SRRGLIRVT	9	Unmodified	_SRRGLIRVT_					0	0	0		ENSG00000163704|ENST00000412055|PRRT3;nc|ENSG00000163704|Q5FWE3-2|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2415161132812	2	529.333082	1056.65161	-1.6633	-0.00088044	3.9963	0.0021154	2.333	0.001235	529.3349572229225	44.299	1.0973	44.299	43.765	44.862	0					63	31	3	0	0	0	0.024283	1	4132	4132		65.465	5.3471	1	856700			76270	7134	53177	53265	84016	84016					0.12555051448271115
SRRGLIRVT	9	Unmodified	_SRRGLIRVT_					0	0	0		ENSG00000163704|ENST00000412055|PRRT3;nc|ENSG00000163704|Q5FWE3-2|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.333082	1056.65161	-1.5167	-0.00080282	3.8432	0.0020343	2.3266	0.0012315	529.3349301463807	44.434	0.70882	44.289	43.958	44.666	-0.14471	-0.010755	0.000299	NaN	65.465	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866200			76271	7134	53177	53265							0.12555051448271115
SRRGLLLLL	9	Unmodified	_SRRGLLLLL_					0	0	0		nc|ENSG00000125787|O43555-2|GNRH2;ENSG00000125787|ENST00000359100|GNRH2;nc|ENSG00000125787|O43555|GNRH2	nc|ENSG00000125787|O43555-2|GNRH2	nc|ENSG00000125787|O43555-2|GNRH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3063354492188	2	520.850576	1039.6866	-0.31949	-0.00016641	0.090075	4.6916E-05	-0.22941	-0.00011949	520.8505285718074	55.116	0.4204	54.965	54.745	55.166	-0.15036					21	11	2	0	0	0	0.024541	1	6017	6017		23.042	3.6825	1	382240			76272	4140	53178	53266	84017	84017					0.16834294256227622
SRRGLPNRC	9	Unmodified	_SRRGLPNRC_					0	0	0		ENST00000445565.1_1_1:119689425-119689652:+|nuORF;ENST00000425884.5_1_1:119683337-119689652:+|nuORF	ENST00000445565.1_1_1:119689425-119689652:+|nuORF	ENST00000445565.1_1_1:119689425-119689652:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2982177734375	2	529.785441	1057.55633	-0.52867	-0.00028008	-1.1078	-0.00058688	-1.6364	-0.00086697	529.784749043565	30.772	0.99588	30.846	30.337	31.333	0.074314					33	22	2	0	0	0	0.024261	1	1895	1895		64.207	33.704	1	75700			76273	14072	53179	53267	84018	84018					0.029853749855874412
SRRGPPALS	9	Unmodified	_SRRGPPALS_					0	0	0		ENST00000529203.1_1_11:67269454-67270084:-|nuORF	ENST00000529203.1_1_11:67269454-67270084:-|nuORF	ENST00000529203.1_1_11:67269454-67270084:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.2845153808594	2	470.769783	939.525013	0.93091	0.00043824	3.3018	0.0015544	4.2327	0.0019926	470.77120150929517	43.088	0.58414	43.119	42.865	43.45	0.030823					27	15	2	0	0	0	0.024495	1	4003	4003		34.173	0	1	1296500			76274	16203	53180	53268	84019	84019					0.052831252231385406
SRRGRGALL	9	Unmodified	_SRRGRGALL_					0	0	0			REV__ENST00000244565.7_1_6:40995845-40996025:-|nuORF	REV__ENST00000244565.7_1_6:40995845-40996025:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7855224609375	2	493.304324	984.594095	0.84429	0.00041649	3.1312	0.0015446	3.9755	0.0019611	493.3051713160245	77.795	0.80453	77.553	77.19	77.995	-0.24232					43	18	3	0	0	0	0.024418	1	9311	9311		37.812	0	1	800540	+		76275	29464	53181	53269	84020	84020					0.10118209242705234
SRRHKAFI	8	Unmodified	_SRRHKAFI_					0	0	0			REV__nc|ENSG00000104368|P00750-4|PLAT	REV__nc|ENSG00000104368|P00750-4|PLAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2525634765625	2	507.801417	1013.58828	-0.31563	-0.00016028	-1.7844	-0.00090614	-2.1001	-0.0010664	507.8005910852098	36.854	0.50692	36.892	36.648	37.155	0.038044					18	12	2	0	0	0	0.027866	1	2891	2891		45.952	13.997	1	181790	+		76276	21439	53182	53270	84021	84021					0.08203110731039942
SRRIGPVL	8	Unmodified	_SRRIGPVL_					0	0	0			REV__ENSG00000283632|ENST00000413988|EXOC3L2	REV__ENSG00000283632|ENST00000413988|EXOC3L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2510070800781	2	449.285069	896.555585	-0.39745	-0.00017857	0.32287	0.00014506	-0.074578	-3.3507E-05	449.2852181825068	35.958	0.92611	36	35.378	36.305	0.041176					35	24	2	0	0	0	0.027866	1	2663	2663		20.482	0	1	99263	+		76277	29248	53183	53271	84022	84022					0.10316903608190842
SRRITKTSST	10	Unmodified	_SRRITKTSST_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7777709960938	2	568.822744	1135.63093	-0.099178	-5.6415E-05	3.4694	0.0019735	3.3702	0.0019171	568.8244925518544	25.606	0.37624	25.435	25.205	25.581	-0.17078					17	8	3	0	0	0	0.03519	1	1206	1206		39.253	16.21	1	229070	+		76278	25847	53184	53272	84023	84023					0.06854416277951714
SRRIYYSI	8	Unmodified	_SRRIYYSI_					0	0	0		ENST00000348165.9_1_7:157000460-157000568:+|nuORF	ENST00000348165.9_1_7:157000460-157000568:+|nuORF	ENST00000348165.9_1_7:157000460-157000568:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2415161132812	2	529.293091	1056.57163	-1.407	-0.00074471	2.2484	0.00119	0.84138	0.00044534	529.7957275037454	43.396	0.798	43.396	43.15	43.948	0					44	21	4	0	0	0	0.027866	1	4132	4132		49.442	0	1	613120			76279	12577	53185	53273	84024	84024					0.04560565054430299
SRRKHVVQ	8	Unmodified	_SRRKHVVQ_					0	0	0		ENST00000470763.1_1_1:5936963-5940792:-|nuORF;ENSG00000131697|ENST00000378156|NPHP4	ENST00000470763.1_1_1:5936963-5940792:-|nuORF	ENST00000470763.1_1_1:5936963-5940792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.2585144042969	2	505.304324	1008.5941	0.27558	0.00013925	2.1338	0.0010782	2.4094	0.0012175	505.3052579066083	41.095	0.56949	40.972	40.725	41.294	-0.12318					34	15	3	0	0	0	0.027866	1	3659	3659		23.042	0	1	364410			76280	4540	53186	53274	84025	84025					0.09014209242707238
SRRKKVIL	8	Unmodified	_SRRKKVIL_					0	0	0			REV__ENST00000524481.5_1_6:128321419-128841710:-|nuORF	REV__ENST00000524481.5_1_6:128321419-128841710:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3128356933594	2	500.342918	998.671283	-0.47553	-0.00023793	1.1032	0.00055197	0.62766	0.00031404	500.3437273873403	76.29	0.31079	76.061	75.888	76.199	-0.22843					13	7	2	0	0	0	0.027866	1	9345	9345		34.173	0	1	153700	+		76281	34385	53187	53275	84026	84026					0.17189427459049966
SRRKTPLL	8	Unmodified	_SRRKTPLL_					0	0	0		ENST00000237642.6_1_4:77228001-77228103:+|nuORF	ENST00000237642.6_1_4:77228001-77228103:+|nuORF	ENST00000237642.6_1_4:77228001-77228103:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.8111267089844	2	485.811451	969.608348	0.75246	0.00036555	1.2038	0.00058482	1.9563	0.00095038	485.81208633493674	106.86	0.61832	106.86	106.6	107.22	0					27	19	3	0	0	0	0.77775	1	13721	13721		60.972	15.02	1	177660			76282	11261	53188	53276	84027	84027					0.12232861670997863
SRRLDQSFK	9	Unmodified	_SRRLDQSFK_					0	0	0			REV__ENST00000463205.2_1_2:202503640-202507349:-|nuORF	REV__ENST00000463205.2_1_2:202503640-202507349:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	569.3455200195312	2	568.812179	1135.60981	-1.181	-0.00067174	4.4706	0.0025429	3.2896	0.0018712	568.8145154414901	35.635	0.50662	35.679	35.497	36.003	0.04406					23	12	3	0	0	0	0.023654	1	2700	2700		85.862	37.902	1	233320	+		76283	32927	53189	53277	84028	84028					0.04742450969092715
SRRLGIVL	8	Unmodified	_SRRLGIVL_					0	0	0		ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.313720703125	2	457.300719	912.586885	-0.023673	-1.0826E-05	-3.151	-0.0014409	-3.1746	-0.0014518	457.3001130482145	44.5	0.30689	44.537	44.306	44.612	0.0369					11	8	2	0	0	0	0.027866	1	4175	4175		40.573	0	1	94928			76284	11635	53190	53278	84029	84029					0.12709476642260142
SRRLNFEEAK	10	Unmodified	_SRRLNFEEAK_					0	0	0		ENSG00000204381|ENST00000375614|LAYN;nc|ENSG00000204381|Q6UX15|LAYN;ENST00000528924.4_1_11:111412216-111425304:+|nuORF	ENSG00000204381|ENST00000375614|LAYN	ENSG00000204381|ENST00000375614|LAYN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.23883056640625	3	417.226438	1248.65748	-0.44882	-0.00018726	1.9722	0.00082286	1.5234	0.0006356	417.56238119625334	42.154	0.45919	41.922	41.583	42.042	-0.23186					20	12	3	0	0	0	0.03519	1	3736	3736		27.644	0.89421	1	86086			76285	10337	53191	53279	84030	84030					0.04310105169270173
SRRLRKTT	8	Unmodified	_SRRLRKTT_					0	0	0		ENST00000438709.6_1_2:98206084-98206213:-|nuORF	ENST00000438709.6_1_2:98206084-98206213:-|nuORF	ENST00000438709.6_1_2:98206084-98206213:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2851257324219	2	509.317432	1016.62031	-0.78014	-0.00039734	-2.5659	-0.0013068	-3.346	-0.0017042	509.31561387100123	46.367	0.11291	46.165	46.081	46.194	-0.20226					4	2	2	0	0	0	0.027866	1	4440	4440		16.473	0	1	127570			76286	14317	53192	53280	84031	84031					0.11266478414165704
SRRLTFSR	8	Unmodified	_SRRLTFSR_					0	0	0			REV__ENSG00000095370|ENST00000314830|SH2D3C	REV__ENSG00000095370|ENST00000314830|SH2D3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.7799072265625	2	511.796332	1021.57811	-0.24502	-0.0001254	-1.8995	-0.00097215	-2.1445	-0.0010975	511.7955064443702	29.506	0.41418	29.356	29.087	29.501	-0.14952					16	9	2	0	0	0	0.027866	1	1810	1810		23.042	0	1	95814	+		76287	20963	53193	53281	84032	84032					0.06818503005797538
SRRLWKFFWEM	11	Unmodified	_SRRLWKFFWEM_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2745971679688	3	529.274734	1584.80237	-0.49586	-0.00026244	-2.9241	-0.0015477	-3.42	-0.0018101	529.2732527163004	72.903	1.3153	72.639	72.17	73.485	-0.26479					67	31	4	0	0	0	1.0978	1	8565	8565		11.932	5.9313	1	860980			76288	3431	53194	53282	84033	84033					0.03336450044753292
SRRMPPPA	8	Unmodified	_SRRMPPPA_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.86376953125	2	456.247629	910.480705	-0.10889	-4.9682E-05	-3.824	-0.0017447	-3.9329	-0.0017944	456.24564434429885	38.648	0.86687	38.423	38.042	38.909	-0.2257					46	23	3	0	0	0	0.027866	1	3169	3169		24.203	2.2429	1	1508700			76289	3636	53195	53283	84034	84034					0.021883978052983366
SRRPLLSII	9	Unmodified	_SRRPLLSII_					0	0	0			REV__ENST00000510626.5_1_4:3131650-3131884:+|nuORF	REV__ENST00000510626.5_1_4:3131650-3131884:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.23876953125	2	527.840208	1053.66586	-0.77868	-0.00041102	4.0834	0.0021554	3.3047	0.0017444	527.8423162756741	68.369	0.342	68.369	68.14	68.482	0					8	5	2	0	0	0	0.024397	1	8172	8172		31.53	0	1	138610	+		76290	34106	53196	53284	84035	84035					0.141177038765818
SRRPVRLL	8	Unmodified	_SRRPVRLL_					0	0	0			REV__ENST00000266254.11_1_22:43475948-43485391:-|nuORF	REV__ENST00000266254.11_1_22:43475948-43485391:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.79022216796875	2	498.824892	995.635232	0.19716	9.8347E-05	1.8968	0.00094619	2.094	0.0010445	498.8255755820626	69.016	0.34026	68.724	68.556	68.897	-0.29267					11	8	2	0	0	0	0.027866	1	8241	8241		55.504	0	1	229110	+		76291	29760	53197	53285	84036	84036					0.13723970282183018
SRRQAGAT	8	Unmodified	_SRRQAGAT_					0	0	0			REV__ENST00000293379.8_1_12:54803090-54803285:-|nuORF	REV__ENST00000293379.8_1_12:54803090-54803285:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.7334289550781	2	423.730658	845.446762	0.44103	0.00018688	2.2345	0.00094681	2.6755	0.0011337	423.73138898240865	59.412	0.5572	59.498	59.206	59.763	0.085682					18	14	2	0	0	0	0.027866	1	6676	6676		6.7355	0.42289	1	154800	+		76292	29958	53198	53286	84037	84037					0.017856926378954086
SRRQGTAWRR	10	Unmodified	_SRRQGTAWRR_					0	0	0			REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|80|3|anti-sense	REV__SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|80|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	637.2686157226562	2	637.352868	1272.69118	-0.58506	-0.00037289	2.2996	0.0014657	1.7145	0.0010928	637.3538676940027	34.861	0.40625	34.654	34.446	34.852	-0.20696					16	9	2	0	0	0	0.03519	1	2571	2571		37.508	9.4267	1	47488	+		76293	37661	53199	53287	84038	84038					0.06574571451687916
SRRRAPAP	8	Unmodified	_SRRRAPAP_					0	0	0		nc|ENSG00000099869|Q6U949|IGF2-AS	nc|ENSG00000099869|Q6U949|IGF2-AS	nc|ENSG00000099869|Q6U949|IGF2-AS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7840576171875	2	455.770117	909.525681	0.045771	2.0861E-05	1.3989	0.00063759	1.4447	0.00065845	455.77033023770116	77.512	0.41882	77.525	77.317	77.736	0.013504					14	9	2	0	0	0	0.027866	1	9484	9484		26.796	0	1	62378			76294	18122	53200	53288	84039	84039					0.06729964662838483
SRRRGGPEV	9	Unmodified	_SRRRGGPEV_					0	0	0			REV__ENST00000329245.8_1_8:144413480-144416919:-|nuORF	REV__ENST00000329245.8_1_8:144413480-144416919:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3130798339844	2	507.283589	1012.55262	-0.67059	-0.00034018	-3	-0.0015218	-3.6706	-0.001862	507.7846070069168	65.12	0.60263	64.864	64.582	65.184	-0.25563					22	14	2	0	0	0	0.024427	1	7374	7374		26.693	0	1	208940	+		76295	30444	53201	53289	84040	84040					0.04685028483390852
SRRRPFDL	8	Unmodified	_SRRRPFDL_					0	0	0		ENST00000308064.6_1_11:45673544-45686758:-|nuORF;ENST00000531322.1_1_11:45673541-45686758:-|nuORF	ENST00000308064.6_1_11:45673544-45686758:-|nuORF	ENST00000308064.6_1_11:45673544-45686758:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2579956054688	2	523.796332	1045.57811	-1.0908	-0.00057136	-1.8643	-0.00097653	-2.9552	-0.0015479	523.7954482292046	24.131	0.30485	24.131	24.036	24.341	0					11	6	2	0	0	0	0.027866	1	1031	1031		19.36	0	1	31153			76296	12022	53202	53290	84041	84041					0.05714503005788174
SRRRQNKFPRI	11	Unmodified	_SRRRQNKFPRI_					0	0	0		ENST00000501938.6_1_5:98105741-98105807:-|nuORF	ENST00000501938.6_1_5:98105741-98105807:-|nuORF	ENST00000501938.6_1_5:98105741-98105807:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.28179931640625	3	486.623525	1456.84875	-1.384	-0.00067349	-4.0509	-0.0019713	-5.4349	-0.0026448	486.95565039367324	65.343	0.24445	65.14	64.982	65.226	-0.20254					8	5	2	0	0	0	0.02486	1	7469	7469		8.7993	0	1	38182			76297	15657	53203	53291	84042	84042					0.13859650991071248
SRRRRPWGARR	11	Unmodified	_SRRRRPWGARR_					0	0	0			REV__ENST00000480510.5_1_22:37690752-37692110:+|nuORF	REV__ENST00000480510.5_1_22:37690752-37692110:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.3082580566406	3	485.287248	1452.83991	-0.90746	-0.00044038	-1.3226	-0.00064183	-2.23	-0.0010822	485.2855174673291	65.85	0.33055	65.637	65.463	65.794	-0.21327					9	7	2	0	0	0	0.024792	1	7513	7513		24.232	15.02	1	58513	+		76298	32918	53204	53292	84043	84043					0.13160722145244108
SRRRRPWGARR	11	Unmodified	_SRRRRPWGARR_					0	0	0			REV__ENST00000480510.5_1_22:37690752-37692110:+|nuORF	REV__ENST00000480510.5_1_22:37690752-37692110:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.3087463378906	3	485.287248	1452.83991	-0.26208	-0.00012718	3.9396	0.0019119	3.6776	0.0017847	485.2891443299355	65.285	0.81323	65.034	64.665	65.479	-0.25112					62	19	4	0	0	0	0.024851	1	7499	7499		19.263	0.73163	1	1636700	+		76299	32918	53204	53292	84044	84044					0.13160722145244108
SRRRRRPPN	9	Unmodified	_SRRRRRPPN_					0	0	0			REV__ENSG00000127129|ENST00000372587|EDN2	REV__ENSG00000127129|ENST00000372587|EDN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8551635742188	2	597.855578	1193.6966	-1.6739	-0.0010008	2.6936	0.0016104	1.0197	0.00060961	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	0.89441	1	11693	11693		32.812	3.6424	1	4454900	+		76300	22919	53205	53293	84045	84045					0.10750295034176816
SRRRRRPPN	9	Unmodified	_SRRRRRPPN_					0	0	0			REV__ENSG00000127129|ENST00000372587|EDN2	REV__ENSG00000127129|ENST00000372587|EDN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8558349609375	2	597.855578	1193.6966	-0.69485	-0.00041542	1.7598	0.0010521	1.0649	0.00063667	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.94809	1	11604	11604		29.15	2.4566	1	4386000	+		76301	22919	53205	53293	84046	84046					0.10750295034176816
SRRRTVPS	8	Unmodified	_SRRRTVPS_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2900695800781	2	479.780682	957.546811	0.27661	0.00013271	2.8472	0.001366	3.1238	0.0014987	479.7817252216918	52.363	1.0299	52.363	51.871	52.901	0					43	26	3	0	0	0	0.027866	1	5668	5668		29.15	0	1	1034200	+		76302	26207	53206	53294	84047	84047					0.06633929971701491
SRRRWWLVRFR	11	Unmodified	_SRRRWWLVRFR_					0	0	0			REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2838745117188	3	539.983165	1616.92767	-0.74136	-0.00040032	-1.9244	-0.0010391	-2.6658	-0.0014395	540.3162830253788	42.208	0.57251	41.976	41.583	42.155	-0.23186					26	15	2	0	0	0	0.024898	1	3725	3725		0.28643	0	1	157770	+		76303	30133	53207	53295	84048	84048					0.14387923015988235
SRRRWWLVRFR	11	Unmodified	_SRRRWWLVRFR_					0	0	0			REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.3214721679688	3	539.983165	1616.92767	-0.58	-0.00031319	3.3086	0.0017866	2.7286	0.0014734	539.9850782645198	103.8	1.2203	103.64	103.04	104.26	-0.1679					36	31	2	0	0	0	0.024902	1	12918	12918		3.026	1.794	1	52949	+		76304	30133	53207	53295	84049	84049					0.14387923015988235
SRRSQPPNP	9	Unmodified	_SRRSQPPNP_					0	0	0			REV__ENST00000432059.6_2_4:147442995-147443109:-|nuORF	REV__ENST00000432059.6_2_4:147442995-147443109:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.7796020507812	2	519.775597	1037.53664	-0.79925	-0.00041543	1.1953	0.00062131	0.39608	0.00020587	519.7758993225506	51.642	0.30478	51.494	51.406	51.711	-0.14735					16	8	2	0	0	0	0.024261	1	5481	5481		54.776	0	1	577890	+		76305	32377	53208	53296	84050	84050					0.019373222464764694
SRRTKIAK	8	Unmodified	_SRRTKIAK_					0	0	0		nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	nc|ENSG00000172943|Q9UPP1-4|PHF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.28289794921875	2	480.309075	958.603597	-1.6438	-0.00078952	-2.8087	-0.001349	-4.4524	-0.0021385	480.30757562728456	51.749	1.4223	51.48	51.049	52.471	-0.26903					60	37	2	0	0	0	0.027866	1	5352	5352		39.253	7.298	1	390030			76306	8325	53209	53297	84051	84051					0.12263977528220948
SRRTKLLHRKF	11	Unmodified	_SRRTKLLHRKF_					0	0	0		ENST00000374675.7_1_6:33171853-33172033:+|nuORF	ENST00000374675.7_1_6:33171853-33172033:+|nuORF	ENST00000374675.7_1_6:33171853-33172033:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2968444824219	3	481.300271	1440.87898	0.48727	0.00023452	2.3234	0.0011182	2.8106	0.0013528	481.30125104758173	46.215	0.55126	46.118	45.887	46.438	-0.096653					18	14	2	0	0	0	0.024865	1	4433	4433		5.1424	0	1	168280			76307	13128	53210	53298	84052	84052					0.1761800965623479
SRRTPNNP	8	Unmodified	_SRRTPNNP_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.3153991699219	2	471.249215	940.483876	0.15612	7.357E-05	-4.2671	-0.0020109	-4.111	-0.0019373	471.24715683815737	55.882	0.78135	55.666	55.336	56.118	-0.21607					31	20	2	0	0	0	0.027866	1	6081	6081		68.787	5.4806	1	606340			76308	202	53211	53299	84053	84053					0.011253641836674433
SRRTPNNP	8	Unmodified	_SRRTPNNP_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.3152160644531	2	471.249215	940.483876	-1.468	-0.00069181	-2.5841	-0.0012177	-4.0521	-0.0019096	471.24785295236615	55.933	0.62675	55.718	55.412	56.038	-0.21551					34	16	3	0	0	0	0.027866	1	6070	6070		79.451	35.334	1	717980			76309	202	53211	53299	84054	84054					0.011253641836674433
SRRTPNNP	8	Unmodified	_SRRTPNNP_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.249215	940.483876	-0.69936	-0.00032957	-4.1913	-0.0019752	-4.8907	-0.0023047	471.247065118431	55.79	0.58478	55.633	55.348	55.933	-0.15656	-0.038913	-0.00084021	NaN	68.787	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362950			76310	202	53211	53299							0.011253641836674433
SRRTRLLA	8	Unmodified	_SRRTRLLA_					0	0	0			REV__ENSG00000139880|ENST00000487137|CDH24	REV__ENSG00000139880|ENST00000487137|CDH24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7841491699219	2	486.8067	971.598846	0.35173	0.00017122	1.6346	0.00079576	1.9864	0.00096698	486.80785693339243	100.94	0.12438	100.77	100.71	100.84	-0.17178					5	3	2	0	0	0	0.027866	1	12510	12510		29.15	9.1528	1	57114	+		76311	23970	53212	53300	84055	84055					0.11191093385468776
SRRTSWIF	8	Unmodified	_SRRTSWIF_					0	0	0			REV__ENSG00000105737|ENST00000593562|GRIK5	REV__ENSG00000105737|ENST00000593562|GRIK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2984008789062	2	526.785433	1051.55631	-0.47383	-0.00024961	-0.10427	-5.4925E-05	-0.57809	-0.00030453	526.784738380115	54.99	0.16595	55.088	54.982	55.148	0.098015					7	4	2	0	0	0	0.027866	1	5964	5964		27.882	3.6795	1	86640	+		76312	21561	53213	53301	84056	84056					0.03259698257238597
SRRYARSISN	10	Unmodified	_SRRYARSISN_					0	0	0			REV__ENSG00000103534|ENST00000542583|TMC5	REV__ENSG00000103534|ENST00000542583|TMC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.24530029296875	3	403.886415	1208.63742	1.6968	0.0006853	3.4635	0.0013989	5.1603	0.0020842	403.88712808128236	31.953	0.81952	32.022	31.726	32.546	0.068962					44	20	4	0	0	0	0.03519	1	2136	2136		34.087	17.369	1	140070	+		76313	21393	53214	53302	84057	84057					0.04144354229333658
SRRYARSISN	10	Unmodified	_SRRYARSISN_					0	0	0			REV__ENSG00000103534|ENST00000542583|TMC5	REV__ENSG00000103534|ENST00000542583|TMC5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	403.886415	1208.63742	0.13129	5.3027E-05	4.3041	0.0017384	4.4354	0.0017914	403.88780618198365	32.153	0.54746	32.165	31.902	32.45	0.011795	0.071496	0.00038078	NaN	27.644	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227610	+		76314	21393	53214	53302							0.04144354229333658
SRSAFKFK	8	Unmodified	_SRSAFKFK_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2272644042969	2	485.777077	969.5396	-0.38202	-0.00018558	0.21197	0.00010297	-0.17005	-8.2608E-05	485.77700788527744	54.747	0.66645	54.6	54.245	54.911	-0.14609					26	17	2	0	0	0	0.027866	1	5822	5822		27.882	0	1	1044400			76315	10601	53215	53303	84058	84058					0.053611973712804684
SRSAFKFK	8	Unmodified	_SRSAFKFK_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	485.777077	969.5396	0.93707	0.00045521	-1.3822	-0.00067146	-0.44517	-0.00021626	485.77623681833626	54.885	0.80915	54.679	54.237	55.047	-0.20613					33	21	2	0	0	0	0.027866	1	5825	5825		34.173	12.213	1	1126400			76316	10601	53215	53303	84059	84059					0.053611973712804684
SRSDSDDKC	9	Unmodified	_SRSDSDDKC_					0	0	0		CLCN2|p.P890R|1|0.1|ENSG00000114859|chr3:184346634-184346634|G/C|missense_variant	CLCN2|p.P890R|1|0.1|ENSG00000114859|chr3:184346634-184346634|G/C|missense_variant	CLCN2|p.P890R|1|0.1|ENSG00000114859|chr3:184346634-184346634|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.71533203125	2	506.703645	1011.39274	-0.040635	-2.059E-05	-2.3159	-0.0011735	-2.3565	-0.001194	506.7025777463181	34.087	0.36016	33.863	33.6	33.96	-0.22412					12	8	2	0	0	0	0.024344	1	2483	2483		45.972	0.020292	1	309210			76317	450	53216	53304	84060	84060					-0.11250312366644266
SRSFKMAPP	9	Unmodified	_SRSFKMAPP_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2592468261719	2	510.768394	1019.52224	-1.1781	-0.00060175	-1.702	-0.00086934	-2.8802	-0.0014711	510.76735007584165	25.083	0.55668	25.049	24.681	25.238	-0.034395					18	12	2	0	0	0	0.024477	1	1089	1089		35.618	8.9254	1	42422	+		76318	25395	53217	53305	84061	84061					0.013255337739678907
SRSFKMAPP	9	Unmodified	_SRSFKMAPP_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	REV__nc|ENSG00000161681|Q9Y566-2|SHANK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.768394	1019.52224	-0.34757	-0.00017753	-3.9901	-0.002038	-4.3377	-0.0022156	510.7662114353076	25.314	0.24949	25.143	24.997	25.247	-0.17078	0.047374	-0.0010332	NaN	35.618	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66923	+		76319	25395	53217	53305							0.013255337739678907
SRSFSCKDLQP	11	Unmodified	_SRSFSCKDLQP_					0	0	0		nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.554931640625	3	423.208167	1266.60267	0.22422	9.4893E-05	4.039	0.0017094	4.2633	0.0018042	423.5440350329903	24.102	0.44496	23.887	23.599	24.044	-0.21511					14	9	2	0	0	0	0.024763	1	1019	1019		49.466	8.3568	1	21222			76320	18317	53218	53306	84062	84062					-0.019966496936604017
SRSFVHGPFAL	11	Unmodified	_SRSFVHGPFAL_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2351989746094	3	406.552374	1216.63529	-0.16735	-6.8037E-05	-4.092	-0.0016636	-4.2593	-0.0017316	406.5504653339587	30.02	1.0599	29.842	29.064	30.124	-0.17817					53	24	3	0	0	0	0.024751	1	1769	1769		21.78	0	1	170060	+		76321	24185	53219	53307	84063	84063					0.03563925491539521
SRSGAPRRPRE	11	Unmodified	_SRSGAPRRPRE_					0	0	0			REV__ENST00000395066.7_1_15:74907479-74907686:+|nuORF	REV__ENST00000395066.7_1_15:74907479-74907686:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.1618957519531	3	423.569198	1267.68576	0.14271	6.0449E-05	4.4407	0.001881	4.5835	0.0019414	423.57092668297565	30.96	0.65023	30.808	30.511	31.161	-0.15231					31	15	3	0	0	0	0.024723	1	2041	2041		22.075	0	1	214380	+		76322	31686	53220	53308	84064	84064					0.0626284786924316
SRSGQWHVTSE	11	Unmodified	_SRSGQWHVTSE_					0	0	0		TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant;TMEM132E|p.V544Wfs*31|1|0.24|ENSG00000181291|chr17:34635008-34635008|G/-|frameshift_variant;ENSG00000181291|ENST00000631683|TMEM132E	TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	TMEM132E|p.I360Sfs*7|1|0.37|ENSG00000181291|chr17:34630016-34630016|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	637.268798828125	2	637.299633	1272.58471	-1.2501	-0.00079666	0.87573	0.0005581	-0.37433	-0.00023856	637.3002384692228	34.514	0.43823	34.29	34.142	34.58	-0.22412					15	10	3	0	0	0	0.02479	1	2590	2590		24.232	4.2013	1	155340			76323	9032	53221	53309	84065	84065					-0.04067648624140929
SRSHRSTPT	9	Unmodified	_SRSHRSTPT_					0	0	0			REV__ENST00000405617.3_1_6:5085125-5085545:+|nuORF	REV__ENST00000405617.3_1_6:5085125-5085545:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7894897460938	2	514.765229	1027.5159	-0.67017	-0.00034498	-3.3676	-0.0017335	-4.0378	-0.0020785	514.7637018401666	54.629	1.9162	54.629	53.976	55.892	0					139	54	4	0	0	0	0.024457	1	6099	6099		29.15	0	1	1816700	+		76324	31914	53222	53310	84066	84066					0.0032473186681727384
SRSHRSTPT	9	Unmodified	_SRSHRSTPT_					0	0	0			REV__ENST00000405617.3_1_6:5085125-5085545:+|nuORF	REV__ENST00000405617.3_1_6:5085125-5085545:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.79052734375	2	514.765229	1027.5159	-0.13174	-6.7817E-05	-3.7588	-0.0019349	-3.8905	-0.0020027	514.7634781037222	54.683	2.5423	54.533	53.636	56.179	-0.15036					156	71	4	0	0	0	0.024381	1	6085	6085		29.15	2.4566	1	1506800	+		76325	31914	53222	53310	84067	84067					0.0032473186681727384
SRSKGHTG	8	Unmodified	_SRSKGHTG_					0	0	0			REV__ENST00000450554.6_1_19:56165635-56166109:+|nuORF	REV__ENST00000450554.6_1_19:56165635-56166109:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.76153564453125	2	415.217383	828.420213	0.78272	0.000325	2.629	0.0010916	3.4117	0.0014166	415.21768730393086	87.824	0.34761	87.789	87.573	87.921	-0.035355					11	8	2	0	0	0	0.027866	1	11002	11002		37.159	10.363	1	68922	+		76326	32705	53223	53311	84068	84068					-0.0008599625342640138
SRSKGRDH	8	Unmodified	_SRSKGRDH_					0	0	0		ENST00000605123.1_1_5:154872251-154872623:+|nuORF;ENSG00000138398|ENST00000260970|PPIG	ENST00000605123.1_1_5:154872251-154872623:+|nuORF	ENST00000605123.1_1_5:154872251-154872623:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.76416015625	2	471.746839	941.479125	0.062892	2.9669E-05	-4.1816	-0.0019727	-4.1187	-0.001943	471.7449637764807	31.779	0.84819	31.779	31.3	32.149	0					27	20	2	0	0	0	0.027866	1	2156	2156		19.104	0	1	78405			76327	5238	53224	53312	84069	84069					0.006044800409085838
SRSKGRDH	8	Unmodified	_SRSKGRDH_					0	0	0		ENST00000605123.1_1_5:154872251-154872623:+|nuORF;ENSG00000138398|ENST00000260970|PPIG	ENST00000605123.1_1_5:154872251-154872623:+|nuORF	ENST00000605123.1_1_5:154872251-154872623:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7644348144531	2	471.746839	941.479125	0.12089	5.7027E-05	-3.9987	-0.0018864	-3.8779	-0.0018294	471.7448720602271	31.61	0.5209	31.621	31.382	31.902	0.011799					22	12	2	0	0	0	0.027866	1	2141	2141		27.882	15.675	1	112650			76328	5238	53224	53312	84070	84070					0.006044800409085838
SRSKKGRDR	9	Unmodified	_SRSKKGRDR_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.31640625	2	545.31542	1088.61629	-0.95669	-0.0005217	3.3914	0.0018494	2.4347	0.0013277	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.74711	1	11225	11225		42.864	2.8061	1	15621000	+		76329	22022	53225	53313	84071	84071					0.07552388920453268
SRSKKKKK	8	Unmodified	_SRSKKKKK_					0	0	0		ENST00000349223.9_1_16:68260779-68260980:+|nuORF;nc|ENSG00000089335|Q9NR11|ZNF302	ENST00000349223.9_1_16:68260779-68260980:+|nuORF	ENST00000349223.9_1_16:68260779-68260980:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7947692871094	2	495.33255	988.650548	-0.3127	-0.00015489	-2.2832	-0.001131	-2.5959	-0.0012858	495.3289501753967	36.365	0.68414	36.365	36.162	36.846	0					38	18	3	0	0	0	0.027866	1	2895	2895		13.775	0	1	219360			76330	12588	53226	53314	84072	84072					0.15576837079379402
SRSKMWLLL	9	Unmodified	_SRSKMWLLL_					0	0	0		nc|ENSG00000182333|P07098-4|LIPF;nc|ENSG00000182333|P07098-3|LIPF	nc|ENSG00000182333|P07098-4|LIPF	nc|ENSG00000182333|P07098-4|LIPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3303833007812	2	567.328619	1132.64269	0.34975	0.00019842	1.7115	0.000971	2.0613	0.0011694	567.3294474759615	93.874	1.3174	93.752	93.41	94.727	-0.12215					92	30	5	0	0	0	0.91321	1	11557	11557		31.53	1.2121	1	1325500			76331	18569	53227	53315	84073	84073					0.0816694176760393
SRSKRSLGV	9	Unmodified	_SRSKRSLGV_					0	0	0			REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	REV__RIMS2|p.Q1102Ffs*39|1|0.12|ENSG00000176406|chr8:104251118-104251119|-/TT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.299560546875	2	495.296165	988.577777	0.25218	0.0001249	2.2153	0.0010972	2.4674	0.0012221	495.2972951377112	100.83	1.0364	100.69	100.32	101.36	-0.13364					56	25	3	0	0	0	0.39228	1	12511	12511		66.429	8.618	1	1114000	+		76332	27018	53228	53316	84074	84074					0.08303083285966295
SRSLFLVE	8	Unmodified	_SRSLFLVE_					0	0	0			REV__ENST00000444527.2_1_8:56366358-56367090:-|nuORF	REV__ENST00000444527.2_1_8:56366358-56367090:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2901306152344	2	475.768917	949.523281	0.58728	0.00027941	-0.49108	-0.00023364	0.096202	4.577E-05	475.7684759501972	58.983	0.61667	59.069	58.884	59.501	0.085682					23	16	2	0	0	0	0.027866	1	6609	6609		29.15	0	1	131060	+		76333	32594	53229	53317	84075	84075					0.04650071414528156
SRSLHSDVTL	10	Unmodified	_SRSLHSDVTL_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2	REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.796142578125	2	557.796195	1113.57784	0.16982	9.4726E-05	-0.52374	-0.00029214	-0.35392	-0.00019741	557.79592990636	39.404	1.3086	39.404	39.006	40.314	0					98	36	5	0	0	0	0.61732	1	3375	3375		75.043	2.1641	1	11603000	+		76334	23014	53230	53318	84076	84076					0.025590384953147804
SRSLILFAKLN	11	Unmodified	_SRSLILFAKLN_					0	0	0		ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	631.3847045898438	2	631.38498	1260.75541	-0.17488	-0.00011042	-0.53749	-0.00033936	-0.71237	-0.00044978	631.3844481902091	85.107	0.36232	84.904	84.759	85.122	-0.20251					16	8	3	0	0	0	1.0183	1	10307	10307		32.751	1.2207	1	440430			76335	15980	53231	53319	84077	84077					0.13545913765278783
SRSLLQENES	10	Unmodified	_SRSLLQENES_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.7911987304688	2	581.788566	1161.56258	0.1299	7.5577E-05	4.227	0.0024592	4.3569	0.0025348	581.7909446531277	41.73	0.92591	41.753	41.464	42.39	0.023006					77	26	4	0	0	0	1.0002	1	3734	3734		45.972	6.7194	1	1960600	+		76336	23604	53232	53320	84078	84078					-0.011738730925571872
SRSLMLLTL	9	Unmodified	_SRSLMLLTL_					0	0	0			REV__ENST00000359276.8_1_X:16716417-16717072:-|nuORF	REV__ENST00000359276.8_1_X:16716417-16717072:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7809448242188	2	517.307352	1032.60015	-0.11928	-6.1702E-05	-1.8179	-0.0009404	-1.9372	-0.0010021	517.3054193215709	41.755	0.54842	41.755	41.505	42.053	0					34	15	3	0	0	0	0.024466	1	3825	3825		39.253	5.7372	1	165820	+		76337	30875	53233	53321	84079	84079					0.08515546639364402
SRSLMLLTL	9	Unmodified	_SRSLMLLTL_					0	0	0			REV__ENST00000359276.8_1_X:16716417-16717072:-|nuORF	REV__ENST00000359276.8_1_X:16716417-16717072:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7810668945312	2	517.307352	1032.60015	-0.37574	-0.00019438	-1.7692	-0.00091523	-2.145	-0.0011096	517.808208219648	41.998	0.62051	41.866	41.528	42.149	-0.1322					32	17	3	0	0	0	0.024466	1	3809	3809		39.253	3.6345	1	261410	+		76338	30875	53233	53321	84080	84080					0.08515546639364402
SRSLNSLSH	9	Unmodified	_SRSLNSLSH_					0	0	0			REV__ENST00000559946.1_1_14:103016683-103021286:+|nuORF	REV__ENST00000559946.1_1_14:103016683-103021286:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2935791015625	2	500.762155	999.509757	0.2183	0.00010931	3.5601	0.0017828	3.7784	0.0018921	500.76371435942104	50.035	0.89697	49.929	49.525	50.422	-0.10558					39	20	3	0	0	0	0.024209	1	5117	5117		31.53	5.9558	1	801380	+		76339	35130	53234	53322	84081	84081					0.009982136352846283
SRSLPMDH	8	Unmodified	_SRSLPMDH_					0	0	0		ENSG00000143369|ENST00000369047|ECM1;nc|ENSG00000143369|Q16610-4|ECM1;ENST00000470432.5_1_1:150480640-150482267:+|nuORF;nc|ENSG00000143369|Q16610-2|ECM1	ENSG00000143369|ENST00000369047|ECM1	ENSG00000143369|ENST00000369047|ECM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7644348144531	2	471.726726	941.4389	0.13522	6.3786E-05	-0.34718	-0.00016377	-0.21196	-9.9987E-05	471.7265214204416	31.509	0.97374	31.52	31.17	32.144	0.011797					34	23	2	0	0	0	0.027866	1	2141	2141		18.324	10.093	1	182180			76340	5640	53235	53323	84082	84082					-0.034162026738727036
SRSLQIDW	8	Unmodified	_SRSLQIDW_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78851318359375	2	502.761623	1003.50869	-0.43553	-0.00021897	4.4431	0.0022338	4.0076	0.0020149	503.26562181849914	32.163	0.58405	32.163	31.91	32.494	0					18	14	2	0	0	0	0.027866	1	2222	2222		29.15	1.2673	1	210070			76341	1082	53236	53324	84083	84083					0.007079992663648227
SRSLTNFNIN	10	Unmodified	_SRSLTNFNIN_					0	0	0		ENST00000394135.7_1_15:99789787-99791379:-|nuORF;ENST00000394129.6_1_15:99785679-99791400:-|nuORF;ENST00000558663.5_1_15:99768880-99791424:-|nuORF	ENST00000394135.7_1_15:99789787-99791379:-|nuORF	ENST00000394135.7_1_15:99789787-99791379:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.3047485351562	2	583.301644	1164.58874	-1.3389	-0.00078098	-0.41036	-0.00023937	-1.7493	-0.0010203	583.3001399298446	45.765	0.33995	45.765	45.613	45.953	0					17	9	3	0	0	0	0.03519	1	4491	4491		20.947	6.0821	1	122290			76342	13481	53237	53325	84084	84084					0.013024408695855527
SRSLVTLLD	9	Unmodified	_SRSLVTLLD_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.3214111328125	2	502.292756	1002.57096	0.56482	0.0002837	3.2247	0.0016197	3.7895	0.0019034	502.29414988499406	63.463	0.93637	63.463	63.161	64.097	0					66	25	4	0	0	0	0.023842	1	7398	7398		67.494	37.176	1	3502300	+		76343	20514	53238	53326	84085	84085					0.06977725614717656
SRSNDMSLV	9	Unmodified	_SRSNDMSLV_					0	0	0			REV__ENST00000548088.1_1_12:52632481-52635423:+|nuORF	REV__ENST00000548088.1_1_12:52632481-52635423:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7514953613281	2	504.742573	1007.47059	-1.2961	-0.00065422	-1.9707	-0.00099467	-3.2668	-0.0016489	504.7414723532245	34.09	0.7098	33.914	33.583	34.293	-0.17557					47	17	4	0	0	0	0.024381	1	2445	2445		37.159	15.199	1	1931300	+	+	76344	19532	53239	53327	84086	84086					-0.032842547105815356
SRSNFYKL	8	Unmodified	_SRSNFYKL_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MSMS	OPSCC_39_ClassI_Rep-3	3	507.7664489746094	2	507.771991	1013.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.16	1	36.198	35.698	36.698	0.038044								0	0	0	0.35942	1	2790	2790		97.473	1.2823	1		+		76345	24301	53240	53328	84087	84087					0.023205896460467557
SRSNTLASLS	10	Unmodified	_SRSNTLASLS_					0	0	0			REV__ENST00000530451.1_1_11:64889655-64897376:-|nuORF	REV__ENST00000530451.1_1_11:64889655-64897376:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2557983398438	2	518.275095	1034.53564	0.49647	0.00025731	0.93021	0.00048211	1.4267	0.00073942	518.7768054726391	50.088	0.78516	49.907	49.532	50.317	-0.18071					71	20	5	0	0	0	0.03519	1	5123	5123		37.812	0	1	1219300	+		76346	34539	53241	53329	84088	84088					0.019750630869111774
SRSPLPLLL	9	Unmodified	_SRSPLPLLL_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.79022216796875	2	498.316035	994.617516	0.34206	0.00017045	-0.14275	-7.1135E-05	0.19931	9.9319E-05	498.31570080079706	69.231	1.037	68.938	68.556	69.593	-0.29292					44	26	2	0	0	0	0.024262	1	8241	8241		30.504	7.4612	1	809000	+		76347	29998	53242	53330	84089	84089					0.11999210236683666
SRSPLPLLL	9	Unmodified	_SRSPLPLLL_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.2980651855469	2	498.316035	994.617516	0.33454	0.0001667	0.097289	4.8481E-05	0.43182	0.00021518	498.3156163423792	61.763	0.35067	61.536	61.415	61.766	-0.22663					11	8	2	0	0	0	0.023417	1	7160	7160		58.782	0	1	107100	+		76348	29998	53242	53330	84090	84090					0.11999210236683666
SRSPLPLLL	9	Unmodified	_SRSPLPLLL_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	498.316035	994.617516	-0.10202	-5.0839E-05	0.31941	0.00015916	0.21738	0.00010833	498.31591060511533	68.979	1.1092	68.994	68.644	69.754	0.015129	0.010357	0.00011067	NaN	30.504	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633340	+		76349	29998	53242	53330							0.11999210236683666
SRSPLPLLL	9	Unmodified	_SRSPLPLLL_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.316035	994.617516	-0.82091	-0.00040907	0.57995	0.000289	-0.24096	-0.00012007	498.3162781874613	69.366	0.58465	69.099	68.784	69.368	-0.26725	0.11541	0.00037034	NaN	30.504	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136430	+		76350	29998	53242	53330							0.11999210236683666
SRSPLPLLL	9	Unmodified	_SRSPLPLLL_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.316035	994.617516	-0.46287	-0.00023066	0.32432	0.00016161	-0.13856	-6.9045E-05	498.31607899129773	69.221	0.37636	68.999	68.768	69.145	-0.22245	0.015154	0.00011556	NaN	30.504	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140180	+		76351	29998	53242	53330							0.11999210236683666
SRSPQRPS	8	Unmodified	_SRSPQRPS_					0	0	0		nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-4|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3;ENSG00000256463|ENST00000537592|SALL3	nc|ENSG00000256463|Q9BXA9-3|SALL3	nc|ENSG00000256463|Q9BXA9-3|SALL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.27923583984375	2	457.743765	913.472977	0.46663	0.0002136	3.5988	0.0016473	4.0654	0.0018609	457.745230130771	47.528	0.82984	47.375	46.776	47.606	-0.15301					37	22	2	0	0	0	0.027866	1	4695	4695		32.812	0	1	211780			76352	10908	53243	53331	84091	84091					0.012779618093873069
SRSPSRAHS	9	Unmodified	_SRSPSRAHS_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.7844543457031	2	492.752121	983.48969	-0.35326	-0.00017407	0.031093	1.5321E-05	-0.32217	-0.00015875	492.7528300414653	46.633	0.35086	46.536	46.331	46.682	-0.096649					14	9	3	0	0	0	0.024344	1	4510	4510		37.812	8.662	1	438780			76353	4285	53244	53332	84092	84092					-0.0027153730466125126
SRSPSRAHS	9	Unmodified	_SRSPSRAHS_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.752121	983.48969	-0.25015	-0.00012326	2.1553	0.0010621	1.9052	0.00093879	492.7533014740307	46.122	0.30869	46.173	45.965	46.274	0.051399	-0.18153	0.00077647	NaN	30.318	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64975			76354	4285	53244	53332							-0.0027153730466125126
SRSQQRNF	8	Unmodified	_SRSQQRNF_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.V1274Dfs*4|1|0.09|ENSG00000113522|chr5:132642223-132642224|-/ATCACTCATGATGAAGATTTTG|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.84375	2	511.759946	1021.50534	0.051747	2.6482E-05	2.0185	0.001033	2.0702	0.0010595	511.76079994411253	75.744	0.21479	75.756	75.61	75.825	0.011642					9	5	2	0	0	0	0.027866	1	9242	9242		30.504	14.862	1	94655			76355	3299	53245	53333	84093	84093					-0.004552507876155687
SRSQSKTSV	9	Unmodified	_SRSQSKTSV_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-3|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2640380859375	2	490.261988	978.509422	0.058015	2.8442E-05	3.2503	0.0015935	3.3083	0.0016219	490.26351801643557	50.826	0.95863	50.826	50.609	51.568	0					61	26	4	0	0	0	0.5973	1	5365	5365		52.937	3.4952	1	4490000			76356	9552	53246	53334	84094	84094					0.01930793915448703
SRSRIKVS	8	Unmodified	_SRSRIKVS_					0	0	0		ENST00000431012.5_1_6:30024744-30025305:-|nuORF	ENST00000431012.5_1_6:30024744-30025305:-|nuORF	ENST00000431012.5_1_6:30024744-30025305:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.25604248046875	2	466.785433	931.556313	0.9963	0.00046506	3.0202	0.0014098	4.0165	0.0018748	466.7858448650497	76.605	0.3702	76.617	76.405	76.775	0.011635					16	8	2	0	0	0	0.027866	1	9385	9385		30.504	8.5438	1	58944			76357	14180	53247	53335	84095	84095					0.08779698257228574
SRSRLTPP	8	Unmodified	_SRSRLTPP_					0	0	0			REV__ENST00000263207.7_1_22:19978271-20004293:-|nuORF	REV__ENST00000263207.7_1_22:19978271-20004293:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.28173828125	2	457.264333	912.514114	-0.30131	-0.00013778	-0.26921	-0.0001231	-0.57052	-0.00026088	457.26443921893656	84.016	1.2327	84.042	83.598	84.83	0.02655					61	28	3	0	0	0	0.027866	1	10387	10387		21.96	4.5949	1	512980	+		76358	29680	53248	53336	84096	84096					0.054357228488470355
SRSRQSKV	8	Unmodified	_SRSRQSKV_					0	0	0		ENSG00000090581|ENST00000204679|GNPTG;ENST00000527076.1_1_16:1411666-1412341:+|nuORF	ENSG00000090581|ENST00000204679|GNPTG	ENSG00000090581|ENST00000204679|GNPTG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7627258300781	2	474.27269	946.530826	0.58568	0.00027777	3.7652	0.0017857	4.3509	0.0020635	474.27448885196685	47.358	0.41353	47.358	47.146	47.56	0					17	11	2	0	0	0	0.027866	1	4749	4749		23.042	0	1	366090			76359	1937	53249	53337	84097	84097					0.055422237348125236
SRSRRYPN	8	Unmodified	_SRSRRYPN_					0	0	0			REV__CON__Q3ZBS7	REV__CON__Q3ZBS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.255859375	2	518.275764	1034.53697	0.22677	0.00011753	-0.30807	-0.00015967	-0.081307	-4.214E-05	518.7768661689413	50.281	0.9319	50.001	49.472	50.404	-0.27977					80	24	5	0	0	0	0.027866	1	5135	5135		21.96	0	1	1393700	+	+	76360	19591	53250	53338	84098	84098					0.021087419663217588
SRSRSPRW	8	Unmodified	_SRSRSPRW_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2919311523438	2	516.278306	1030.54206	-0.026364	-1.3611E-05	1.1915	0.00061517	1.1652	0.00060156	516.2788574920962	39.932	0.43895	39.932	39.808	40.247	0					31	11	3	0	0	0	0.027866	1	3495	3495		30.504	0	1	1629000			76361	8398	53251	53339	84099	84099					0.028010458289600138
SRSRTPPV	8	Unmodified	_SRSRTPPV_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2692565917969	2	450.256508	898.498464	-0.60208	-0.00027109	-3.4465	-0.0015518	-4.0486	-0.0018229	450.2549773166052	43.766	0.49844	43.621	43.316	43.814	-0.14471					25	13	2	0	0	0	0.027866	1	4114	4114		30.504	0	1	186940			76362	7760	53252	53340	84100	84100					0.04515436331814726
SRSRTQVEL	9	Unmodified	_SRSRTQVEL_					0	0	0		ENST00000420777.1_1_6:10415003-10415561:+|nuORF;ENST00000443546.1_1_6:10414925-10415535:+|nuORF	ENST00000420777.1_1_6:10415003-10415561:+|nuORF	ENST00000420777.1_1_6:10415003-10415561:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7494506835938	2	538.296362	1074.57817	-0.73682	-0.00039663	1.9552	0.0010525	1.2184	0.00065583	538.299084425419	76.16	0.24889	75.991	75.932	76.181	-0.16854					6	5	2	0	0	0	0.024397	1	9023	9023		39.253	3.6345	1	31200			76363	13981	53253	53341	84101	84101					0.043864582151627474
SRSSTPQHPL	10	Unmodified	_SRSSTPQHPL_					0	0	0		ENST00000482433.1_1_19:2221901-2222597:+|nuORF;ENSG00000104885|ENST00000398665|DOT1L;nc|ENSG00000104885|Q8TEK3-1|DOT1L	ENST00000482433.1_1_19:2221901-2222597:+|nuORF	ENST00000482433.1_1_19:2221901-2222597:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.3060302734375	2	555.288537	1108.56252	-0.84561	-0.00046956	-4.1342	-0.0022957	-4.9798	-0.0027652	555.2859892556648	43.762	0.21527	43.762	43.695	43.91	0					7	5	2	0	0	0	0.03519	1	4121	4121		67.494	12.717	1	65283			76364	2614	53254	53342	84102	84102					0.01258171698100341
SRSSVIVLVF	10	Unmodified	_SRSSVIVLVF_					0	0	0		ENST00000551747.1_1_19:16652231-16653189:-|nuORF	ENST00000551747.1_1_19:16652231-16653189:-|nuORF	ENST00000551747.1_1_19:16652231-16653189:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.830322265625	2	553.832049	1105.64954	0.36892	0.00020432	-4.1653	-0.0023069	-3.7964	-0.0021026	553.8295563012404	101.52	0.97879	101.39	101.09	102.07	-0.13156					52	22	4	0	0	0	1.1265	1	12586	12586		24.519	0.31644	1	618770			76365	16607	53255	53343	84103	84103					0.10094577919812764
SRSTGFLKWK	10	Unmodified	_SRSTGFLKWK_					0	0	0		nc|ENSG00000143954|Q6UW15-2|REG3G;ENSG00000143954|ENST00000272324|REG3G	nc|ENSG00000143954|Q6UW15-2|REG3G	nc|ENSG00000143954|Q6UW15-2|REG3G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.213623046875	3	403.89614	1208.66659	0.41378	0.00016713	4.2598	0.0017205	4.6736	0.0018876	404.2329075112858	56.631	0.35477	56.463	56.165	56.52	-0.1672					11	8	2	0	0	0	0.03519	1	6146	6146		28.577	12.047	1	140600			76366	5704	53256	53344	84104	84104					0.07060498525606818
SRSVLPLR	8	Unmodified	_SRSVLPLR_					0	0	0			REV__SPATA4|p.V184F|1|0.33|ENSG00000150628|chr4:176192765-176192765|C/A|missense_variant	REV__SPATA4|p.V184F|1|0.33|ENSG00000150628|chr4:176192765-176192765|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.750732421875	2	464.290351	926.566149	-0.018401	-8.5434E-06	0.16266	7.5522E-05	0.14426	6.6979E-05	464.29022736620794	42.905	0.46278	42.792	42.464	42.927	-0.11253					19	11	2	0	0	0	0.027866	1	3850	3850		30.504	0	1	120810	+		76367	24726	53257	53345	84105	84105					0.0999288626261432
SRSVPGPGHP	10	Unmodified	_SRSVPGPGHP_					0	0	0		ENST00000371626.8_1_1:52520892-52521162:-|nuORF	ENST00000371626.8_1_1:52520892-52521162:-|nuORF	ENST00000371626.8_1_1:52520892-52521162:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.3233642578125	2	495.759415	989.504277	-0.60599	-0.00030042	4.378	0.0021704	3.772	0.00187	495.76180682650636	64.502	1.5166	64.239	63.791	65.307	-0.2626					91	40	4	0	0	0	0.03519	1	7604	7604		47.657	7.0847	1	9482900			76368	13006	53258	53346	84106	84106					0.009105348434900407
SRTALSAVD	9	Unmodified	_SRTALSAVD_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.24713134765625	2	460.245806	918.47706	-0.81912	-0.00037699	-3.836	-0.0017655	-4.6551	-0.0021425	460.243748747077	43.9	0.34895	43.755	43.534	43.883	-0.14471					12	9	2	0	0	0	0.024292	1	4137	4137		40.778	0	1	88707			76369	1387	53259	53347	84107	84107					0.014560065124328503
SRTDPLVLV	9	Unmodified	_SRTDPLVLV_					0	0	0		nc|ENSG00000070614|P52848-2|NDST1;nc|ENSG00000070614|P52848-3|NDST1;ENSG00000070614|ENST00000261797|NDST1	nc|ENSG00000070614|P52848-2|NDST1	nc|ENSG00000070614|P52848-2|NDST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.73822021484375	2	500.295299	998.576045	-0.012479	-6.2434E-06	-0.74907	-0.00037475	-0.76155	-0.000381	500.2943515127184	34.312	0.53674	34.088	33.762	34.299	-0.22412					19	13	2	0	0	0	0.024541	1	2480	2480		14.137	4.4315	1	127980			76370	1430	53260	53348	84108	84108					0.07670029477321805
SRTDPLVLV	9	Unmodified	_SRTDPLVLV_					0	0	0		nc|ENSG00000070614|P52848-2|NDST1;nc|ENSG00000070614|P52848-3|NDST1;ENSG00000070614|ENST00000261797|NDST1	nc|ENSG00000070614|P52848-2|NDST1	nc|ENSG00000070614|P52848-2|NDST1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.295299	998.576045	-1.219	-0.00060987	-0.74693	-0.00037369	-1.966	-0.00098356	500.29431726941345	34.239	0.3587	34.064	33.934	34.293	-0.17557	-0.012051	6.8751E-07	NaN	14.137	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149350			76371	1430	53260	53348							0.07670029477321805
SRTEAESW	8	Unmodified	_SRTEAESW_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;ENST00000547890.5_1_12:52910884-52911722:-|nuORF;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2192687988281	2	483.219788	964.425024	0.20814	0.00010058	-0.29036	-0.00014031	-0.082218	-3.9729E-05	483.2195092842506	32.413	0.58656	32.177	31.91	32.497	-0.23666					37	13	4	0	0	0	0.68164	1	2228	2228		68.787	4.5796	1	874520		+	76372	520;569	53261	53349	84109	84109					-0.058611569013237386
SRTFPGLPEE	10	Unmodified	_SRTFPGLPEE_					0	0	0			REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.7670288085938	2	566.785296	1131.55604	-0.38353	-0.00021738	-3.1302	-0.0017741	-3.5137	-0.0019915	566.7847899374535	40.783	0.39281	40.783	40.551	40.944	0					13	10	2	0	0	0	0.03519	1	3644	3644		77.318	25.982	1	385650	+		76373	34572	53262	53350	84110	84110					-0.004477662532735849
SRTFPGLPEE	10	Unmodified	_SRTFPGLPEE_					0	0	0			REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7672729492188	2	566.785296	1131.55604	-1.0084	-0.00057157	3.5724	0.0020248	2.5639	0.0014532	566.7856855866704	40.895	0.41872	40.918	40.764	41.182	0.023003					15	11	2	0	0	0	0.03519	1	3617	3617		60.118	22.959	1	191990	+		76374	34572	53262	53350	84111	84111					-0.004477662532735849
SRTGGKVI	8	Unmodified	_SRTGGKVI_					0	0	0		ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.18304443359375	2	409.248152	816.481751	0.20102	8.2267E-05	-0.15513	-6.3485E-05	0.045892	1.8781E-05	409.24791062696016	24.663	0.39061	24.488	24.252	24.643	-0.17484					16	8	3	0	0	0	0.027866	1	1108	1108		7.1934	0	1	179350			76375	2698	53263	53351	84112	84112					0.06616935445845229
SRTILQASL	9	Unmodified	_SRTILQASL_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.C2289Yfs*31|1|0.04|ENSG00000129003|chr15:61922506-61922507|-/TATGAGTACAT|frameshift_variant;VPS13C|p.Q3197Gfs*28|1|0.23|ENSG00000129003|chr15:61882605-61882632|GTACAACCTGGCCCTTAAACTTCTCTGG/-|frameshift_variant;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.79486083984375	2	494.792924	987.571294	0.53317	0.00026381	2.3619	0.0011687	2.8951	0.0014325	494.7943804767347	59.354	1.1895	59.173	58.546	59.736	-0.18134					75	29	4	0	0	0	0.16638	1	6574	6574		95.815	0	1	7594200			76376	4326	53264	53352	84113	84113					0.07701145334567627
SRTIMRTAP	9	Oxidation (M)	_SRTIM(Oxidation (M))RTAP_		SRTIM(1)RTAP		SRTIM(41)RTAP	0	0	1			REV__ENST00000369102.5_2_1:150240920-150244722:+|nuORF	REV__ENST00000369102.5_2_1:150240920-150244722:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7654418945312	2	524.782033	1047.54951	-1.4926	-0.00078331	2.2648	0.0011885	0.77211	0.00040519	524.7829606816695	31.115	0.83264	31.115	30.797	31.63	0					28	19	2	0	0	0	0.024257	1	2031	2031		41.427	9.8968	1	45864	+		76377	31081	53265	53353	84114	84114		876			0.027640173143254287
SRTIMRTAP	9	Oxidation (M)	_SRTIM(Oxidation (M))RTAP_		SRTIM(1)RTAP		SRTIM(99)RTAP	0	0	1			REV__ENST00000369102.5_2_1:150240920-150244722:+|nuORF	REV__ENST00000369102.5_2_1:150240920-150244722:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7657470703125	2	524.782033	1047.54951	-0.5621	-0.00029498	-0.64601	-0.00033901	-1.2081	-0.00063399	524.7823518910129	31.074	0.95271	31.086	30.75	31.702	0.011797					40	22	3	0	0	0	0.020937	1	2013	2013		98.629	47.437	1	43782	+		76378	31081	53265	53353	84115	84115		876			0.027640173143254287
SRTISKID	8	Unmodified	_SRTISKID_					0	0	0			REV__nc|ENSG00000196628|P15884-11|TCF4	REV__nc|ENSG00000196628|P15884-11|TCF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.2708740234375	2	460.263999	918.513445	0.46626	0.0002146	-0.46854	-0.00021565	-0.002282	-1.0503E-06	460.26360052289	43.64	0.46999	43.67	43.522	43.992	0.030827					28	12	3	0	0	0	0.027866	1	4021	4021		16.473	5.6076	1	594610	+		76379	37055	53266	53354	84116	84116					0.050928834091337194
SRTKVPITN	9	Unmodified	_SRTKVPITN_					0	0	0			REV__nc|ENSG00000147130|Q14202-2|ZMYM3	REV__nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.28216552734375	2	508.298373	1014.58219	0.24797	0.00012604	1.9017	0.00096665	2.1497	0.0010927	508.3000777106147	23.416	0.42376	23.214	23.014	23.438	-0.20193					24	9	4	0	0	0	0.024397	1	946	946		47.657	16.128	1	351950	+		76380	36761	53267	53355	84117	84117					0.07548547708847764
SRTLGLLDCTY	11	Unmodified	_SRTLGLLDCTY_					0	0	0		nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2;nc|ENSG00000174938|Q6UXD5-4|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	nc|ENSG00000174938|Q6UXD5-2|SEZ6L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3147583007812	2	621.313363	1240.61217	-0.33526	-0.0002083	0.58874	0.00036579	0.25348	0.00015749	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.44817	1	7670	7670		79.713	10.085	1	26099000			76381	8510	53268	53356	84118	84118					0.001491185918894189
SRTLLFRVLF	10	Unmodified	_SRTLLFRVLF_					0	0	0		ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	626.3799438476562	2	626.38224	1250.74993	0.14483	9.0718E-05	-4.3854	-0.0027469	-4.2405	-0.0026562	626.3793744637064	104.44	1.1159	104.31	103.92	105.03	-0.12561					95	32	5	0	0	0	1.1197	1	12968	12968		20.947	8.1352	1	2513500			76382	14319	53269	53357	84119	84119					0.1345823497345009
SRTLPCQF	8	Unmodified	_SRTLPCQF_					0	0	0		ENST00000533035.5_1_11:65627684-65629484:+|nuORF	ENST00000533035.5_1_11:65627684-65629484:+|nuORF	ENST00000533035.5_1_11:65627684-65629484:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2973937988281	2	476.23947	950.464386	-0.47145	-0.00022452	-3.045	-0.0014502	-3.5165	-0.0016747	476.23787687583905	39.391	1.0451	39.168	38.961	40.006	-0.22311					35	26	2	0	0	0	0.027866	1	3449	3449		12.959	0.75233	1	458340			76383	16307	53270	53358	84120	84120					-0.012827281514546485
SRTLPCQF	8	Unmodified	_SRTLPCQF_					0	0	0		ENST00000533035.5_1_11:65627684-65629484:+|nuORF	ENST00000533035.5_1_11:65627684-65629484:+|nuORF	ENST00000533035.5_1_11:65627684-65629484:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	476.23947	950.464386	-0.27435	-0.00013065	-3.4755	-0.0016552	-3.7499	-0.0017858	476.2376962474078	39.308	0.87237	39.143	38.934	39.806	-0.16458	-0.018303	-0.00012246	NaN	12.959	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432040			76384	16307	53270	53358							-0.012827281514546485
SRTLSSYVSVS	11	Unmodified	_SRTLSSYVSVS_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.307861328125	2	593.309135	1184.60372	-0.6294	-0.00037343	-3.8503	-0.0022844	-4.4797	-0.0026578	593.3065485319781	67.786	0.81554	67.552	67.303	68.119	-0.23375					45	19	3	0	0	0	0.12713	1	7819	7819		106.68	5.4304	1	683710			76385	10874	53271	53359	84121	84121					0.018798879469159147
SRTLSSYVSVS	11	Unmodified	_SRTLSSYVSVS_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	593.309135	1184.60372	0.27857	0.00016528	-5.0661	-0.0030058	-4.7875	-0.0028405	593.3059608801069	67.79	0.74822	67.535	67.279	68.028	-0.25517	0.0037161	-0.00051264	NaN	106.68	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553840			76386	10874	53271	53359							0.018798879469159147
SRTLSSYVSVS	11	Unmodified	_SRTLSSYVSVS_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	593.309135	1184.60372	-0.52955	-0.00031419	-3.7293	-0.0022126	-4.2589	-0.0025268	593.3066530886719	67.745	0.74215	67.507	67.289	68.031	-0.23814	-0.024295	0.0010736	NaN	106.68	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595180			76387	10874	53271	53359							0.018798879469159147
SRTNGDGILV	10	Unmodified	_SRTNGDGILV_					0	0	0			REV__ENST00000336156.9_1_22:45592445-45593009:-|nuORF	REV__ENST00000336156.9_1_22:45592445-45593009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2881469726562	2	516.277638	1030.54072	-0.12408	-6.4059E-05	3.4942	0.001804	3.3701	0.0017399	516.2790940543944	34.269	0.58943	34.062	33.895	34.485	-0.20696					23	14	3	0	0	0	0.03519	1	2544	2544		74.255	24.813	1	178990	+		76388	30544	53272	53360	84122	84122					0.026673669495039576
SRTNSREII	9	Unmodified	_SRTNSREII_					0	0	0			REV__nc|ENSG00000283228|O00305-4|CACNB4;REV__nc|ENSG00000067191|Q02641-3|CACNB1	REV__nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.29296875	2	538.296362	1074.57817	-0.3241	-0.00017446	-3.8845	-0.002091	-4.2086	-0.0022655	538.2937500753592	59.233	0.68098	59.045	58.584	59.265	-0.18795					27	16	3	0	0	0	0.74711	1	6554	6554		42.864	0.46813	1	672480	+		76389	27473;20354	53273	53361	84123	84123					0.0438645821514001
SRTPRSDL	8	Unmodified	_SRTPRSDL_					0	0	0		MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;nc|ENSG00000129422|Q9ULD2-5|MTUS1;MTUS1|p.L553W|1|0.21|ENSG00000129422|chr8:17754150-17754150|A/C|missense_variant;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.26861572265625	2	466.251423	930.488293	-0.35615	-0.00016606	2.4458	0.0011403	2.0896	0.00097428	466.2511167582264	38.848	0.53811	38.749	38.552	39.091	-0.098755					19	14	2	0	0	0	0.027866	1	3251	3251		17.365	0	1	222920			76390	4346;16047	53274	53362	84124	84124					0.02026828606562958
SRTPSTSDMA	10	Unmodified	_SRTPSTSDMA_					0	0	0		ENSG00000167566|ENST00000335999|NCKAP5L;ENST00000433948.5_2_12:50185624-50186122:-|nuORF	ENSG00000167566|ENST00000335999|NCKAP5L	ENSG00000167566|ENST00000335999|NCKAP5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7659301757812	2	526.737488	1051.46042	-0.59478	-0.00031329	2.362	0.0012442	1.7672	0.00093087	526.7367598858931	31.05	0.12771	31.062	30.999	31.127	0.011797					4	2	2	0	0	0	0.03519	1	2025	2025		37.812	3.639	1	15856			76391	7703	53275	53363	84125	84125					-0.06324862435849354
SRTRDRRR	8	Unmodified	_SRTRDRRR_					0	0	0		nc|ENSG00000007392|Q9NQ29-2|LUC7L;nc|ENSG00000007392|Q9NQ29-3|LUC7L;ENSG00000007392|ENST00000293872|LUC7L	nc|ENSG00000007392|Q9NQ29-2|LUC7L	nc|ENSG00000007392|Q9NQ29-2|LUC7L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.7830200195312	2	551.818661	1101.62277	-0.30042	-0.00016578	-2.8764	-0.0015872	-3.1768	-0.001753	551.8167952480895	41.425	0.42086	41.289	41.022	41.443	-0.13553					16	10	2	0	0	0	0.027866	1	3638	3638		10.866	0	1	214260			76392	820	53276	53364	84126	84126					0.07602326871847254
SRTRKGYMF	9	Unmodified	_SRTRKGYMF_					0	0	0			REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.1972045898438	2	573.29785	1144.58115	-0.16636	-9.5371E-05	0.26017	0.00014915	0.093813	5.3783E-05	573.2976213674245	33.13	0.83679	32.929	32.528	33.365	-0.20019					41	20	3	0	0	0	0.024205	1	2328	2328		63.306	4.5243	1	586540	+		76393	37760	53277	53365	84127	84127					0.014640100682981938
SRTRKGYMF	9	Unmodified	_SRTRKGYMF_					0	0	0			REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	REV__UPF2|p.D647Ifs*24|1|0.19|ENSG00000151461|chr10:11979071-11979071|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	573.29785	1144.58115	-0.69661	-0.00039936	0.86331	0.00049493	0.1667	9.5571E-05	573.2981709115614	32.986	0.72404	32.821	32.597	33.321	-0.16565	-0.029775	-0.0002782	NaN	63.306	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646840	+		76394	37760	53277	53365							0.014640100682981938
SRTRLHAR	8	Unmodified	_SRTRLHAR_					0	0	0			REV__ENSG00000274349|ENST00000621410|ZNF658	REV__ENSG00000274349|ENST00000621410|ZNF658	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.6046142578125	2	498.794124	995.573694	-0.40855	-0.00020378	2.5063	0.0012502	2.0978	0.0010464	498.79556083740476	56.392	0.55961	56.235	55.933	56.492	-0.15656					16	13	2	0	0	0	0.027866	1	6066	6066		30.504	0	1	183340	+		76395	29182	53278	53366	84128	84128					0.07573038582881964
SRTSFLFLN	9	Unmodified	_SRTSFLFLN_					0	0	0			REV__ENST00000509996.1_1_4:110901925-110902018:+|nuORF	REV__ENST00000509996.1_1_4:110901925-110902018:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.8059692382812	2	542.792924	1083.57129	-0.71402	-0.00038756	-4.1155	-0.0022339	-4.8296	-0.0026215	542.7907838585994	101.64	0.26187	101.65	101.52	101.78	0.0090332					7	5	2	0	0	0	0.024374	1	12974	12974		49.442	12.995	1	30115	+		76396	34096	53279	53367	84129	84129					0.032851453345756454
SRTSHSRAK	9	Unmodified	_SRTSHSRAK_					0	0	0		ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	ENSG00000154118|ENST00000284262|JPH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.790283203125	2	515.281046	1028.54754	-1.4207	-0.00073204	-2.4653	-0.0012703	-3.886	-0.0020024	515.7817953285831	55.2	0.51115	55.298	55.05	55.561	0.098015					13	13	2	0	0	0	0.024436	1	5990	5990		23.042	0	1	73676			76397	6382	53280	53368	84130	84130					0.03440724620736546
SRTSMDDL	8	Unmodified	_SRTSMDDL_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7609558105469	2	462.708199	923.401846	-0.27077	-0.00012529	-0.5314	-0.00024588	-0.80217	-0.00037117	462.70767983841006	48.811	0.1743	48.811	48.69	48.864	0					7	4	2	0	0	0	0.027866	1	4988	4988		10.866	0	1	88048			76398	3238	53281	53369	84131	84131					-0.06291919010311631
SRTVHLYDNW	10	Unmodified	_SRTVHLYDNW_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7;ENST00000505959.5_1_5:60081876-60083233:-|nuORF	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	431.72979736328125	3	430.879038	1289.61528	0.27579	0.00011883	-3.2846	-0.0014152	-3.0088	-0.0012964	430.87824829096667	39.736	1.2923	39.506	38.904	40.197	-0.23021					58	33	2	0	0	0	0.03519	1	3283	3283		33.922	17.392	1	2043500			76399	7234	53282	53370	84132	84132					-0.017938702391120387
SRTWIQLSAMR	11	Unmodified	_SRTWIQLSAMR_					0	0	0			REV__ENST00000581440.5_1_17:25630497-25631818:+|nuORF	REV__ENST00000581440.5_1_17:25630497-25631818:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7901306152344	3	450.243323	1347.70814	0.97785	0.00044027	-1.8414	-0.00082906	-0.86352	-0.0003888	450.24275261005425	20.281	0.62977	20.085	19.805	20.435	-0.19577					17	12	2	0	0	0	0.024742	1	497	497		32.034	0	1	18540	+		76400	35532	53283	53371	84133	84133					0.048193112226272206
SRTYSVGVCT	10	Unmodified	_SRTYSVGVCT_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3055419921875	2	536.758223	1071.50189	-0.75018	-0.00040267	-4.1451	-0.0022249	-4.8953	-0.0026276	536.7562411193177	47.944	0.46881	47.668	47.382	47.851	-0.27598					19	12	2	0	0	0	0.03519	1	4727	4727		26.693	0	1	202750			76401	9951	53284	53372	84134	84134					-0.030996816764854884
SRVAAAKLC	9	Unmodified	_SRVAAAKLC_					0	0	0		ENST00000567057.5_1_16:88876112-88876655:-|nuORF;ENST00000568575.1_1_16:88876108-88876655:-|nuORF	ENST00000567057.5_1_16:88876112-88876655:-|nuORF	ENST00000567057.5_1_16:88876112-88876655:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2250061035156	2	459.763112	917.511671	-0.58364	-0.00026833	1.2394	0.00056981	0.65573	0.00030148	459.7642582084078	26.722	0.37	26.559	26.382	26.752	-0.16331					10	8	2	0	0	0	0.024427	1	1385	1385		14.137	3.2716	1	34497			76402	16953	53285	53373	84135	84135					0.0496155111952703
SRVAEEPPN	9	Unmodified	_SRVAEEPPN_					0	0	0		ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	ENSG00000155034|ENST00000382368|FBXL18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.8214416503906	2	499.748713	997.482873	0.29076	0.0001453	-4.2803	-0.0021391	-3.9895	-0.0019937	499.74646949480405	67.549	0.51356	67.573	67.31	67.824	0.023911					29	12	4	0	0	0	0.024447	1	7989	7989		32.812	0	1	266320			76403	6447	53286	53374	84136	84136					-0.015968949759098905
SRVALRGAE	9	Unmodified	_SRVALRGAE_					0	0	0			REV__ENSG00000115596|ENST00000233948|WNT6	REV__ENSG00000115596|ENST00000233948|WNT6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2903747558594	2	479.775065	957.535577	-0.28079	-0.00013471	3.9242	0.0018827	3.6434	0.001748	479.77679939463616	53.126	0.58958	52.979	52.72	53.31	-0.14723					25	15	2	0	0	0	0.024438	1	5668	5668		29.17	3.596	1	660260	+		76404	22216	53287	53375	84137	84137					0.0551110787757807
SRVCFYAL	8	Unmodified	_SRVCFYAL_					0	0	0		ENST00000246421.4_1_1:1671049-1677425:-|nuORF	ENST00000246421.4_1_1:1671049-1677425:-|nuORF	ENST00000246421.4_1_1:1671049-1677425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2903747558594	2	479.744388	957.474223	-0.1228	-5.8914E-05	2.9568	0.0014185	2.834	0.0013596	479.7456950078732	53.042	0.81324	52.894	52.607	53.42	-0.14723					46	21	3	0	0	0	0.027866	1	5668	5668		18.324	0	1	1951300			76405	11322	53288	53376	84138	84138					-0.0062154014608495345
SRVCLSGQRL	10	Unmodified	_SRVCLSGQRL_					0	0	0			REV__ENST00000484419.1_1_1:1982069-1987102:+|nuORF	REV__ENST00000484419.1_1_1:1982069-1987102:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.3338623046875	2	559.808582	1117.60261	0.98854	0.00055339	-0.47353	-0.00026508	0.51501	0.00028831	559.8093232639915	51.462	0.19723	51.278	51.14	51.337	-0.18404					6	4	2	0	0	0	0.03519	1	5284	5284		19.997	0	1	70948	+		76406	33539	53289	53377	84139	84139					0.04851395097034583
SRVDEARR	8	Unmodified	_SRVDEARR_					0	0	0		ENST00000382361.7_1_7:5645882-5646230:+|nuORF	ENST00000382361.7_1_7:5645882-5646230:+|nuORF	ENST00000382361.7_1_7:5645882-5646230:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.79046630859375	2	494.767771	987.52099	-0.1941	-9.6036E-05	-3.2077	-0.0015871	-3.4018	-0.0016831	494.766037412069	24.421	0.39848	24.421	24.209	24.608	0					13	8	2	0	0	0	0.027866	1	1059	1059		34.173	0	1	63604			76407	13360	53290	53378	84140	84140					0.026730357294241003
SRVEAILLP	9	Unmodified	_SRVEAILLP_					0	0	0		ENST00000591281.5_1_16:4767458-4779992:-|nuORF	ENST00000591281.5_1_16:4767458-4779992:-|nuORF	ENST00000591281.5_1_16:4767458-4779992:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8213195800781	2	499.305667	996.596781	-0.21187	-0.00010579	0.7792	0.00038906	0.56733	0.00028327	499.30565552171294	67.48	0.87775	67.192	66.832	67.71	-0.28834					37	21	3	0	0	0	0.024409	1	8073	8073		33.922	4.7516	1	632620			76408	17349	53291	53379	84141	84141					0.09834619856997051
SRVEFDILP	9	Unmodified	_SRVEFDILP_					0	0	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3009033203125	2	538.292756	1074.57096	-1.159	-0.00062391	3.1735	0.0017083	2.0144	0.0010844	538.2942723362273	56.571	0.50459	56.406	56.275	56.78	-0.16431					21	13	3	0	0	0	0.024405	1	6309	6309		14.865	0	1	478400	+		76409	25913	53292	53380	84142	84142					0.036657256147236694
SRVEWIPD	8	Unmodified	_SRVEWIPD_					0	0	0			REV__SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|6|1|sense	REV__SVA_F_dup925|chr20:32175372-32176478:+|2.4634990806652954|0.1912703521701025|3.69|514.0|6|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.7947082519531	2	501.256174	1000.49779	-0.57445	-0.00028795	1.0138	0.00050815	0.4393	0.0002202	501.25608681141426	52.403	0.50887	52.285	52.011	52.52	-0.11875					24	12	2	0	0	0	0.027866	1	5458	5458		18.324	0	1	344400	+		76410	37643	53293	53381	84143	84143					-0.0024340310790194053
SRVFVYPV	8	Unmodified	_SRVFVYPV_					0	0	0			REV__ENSG00000100138|ENST00000401959|SNU13	REV__ENSG00000100138|ENST00000401959|SNU13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7900695800781	2	483.774003	965.533452	-0.60182	-0.00029115	-3.0913	-0.0014955	-3.6931	-0.0017866	483.7719846722722	32.515	0.89508	32.527	32.299	33.194	0.011795					36	23	2	0	0	0	0.027866	1	2345	2345		17.365	4.4058	1	737640	+		76411	21053	53294	53382	84144	84144					0.04930679139761196
SRVIDAAK	8	Unmodified	_SRVIDAAK_					0	0	0		nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	nc|ENSG00000018610|Q9H5V9-2|STEEP1	nc|ENSG00000018610|Q9H5V9-2|STEEP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.6986389160156	2	430.253434	858.492316	-0.055101	-2.3707E-05	2.2004	0.00094673	2.1453	0.00092302	430.2533542522046	31.935	1.1662	32.004	31.606	32.773	0.06896					44	29	3	0	0	0	0.027866	1	2239	2239		9.1829	1.9896	1	389570			76412	942	53295	53383	84145	84145					0.057409181002867626
SRVIDAAK	8	Unmodified	_SRVIDAAK_					0	0	0		nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	nc|ENSG00000018610|Q9H5V9-2|STEEP1	nc|ENSG00000018610|Q9H5V9-2|STEEP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	430.253434	858.492316	-0.45378	-0.00019524	2.3562	0.0010138	1.9024	0.00081853	430.2534532392594	32.252	1.2437	32.252	31.509	32.753	0	0.10323	0.00028129	NaN	9.1829	56	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456800			76413	942	53295	53383							0.057409181002867626
SRVIDAAK	8	Unmodified	_SRVIDAAK_					0	0	0		nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	nc|ENSG00000018610|Q9H5V9-2|STEEP1	nc|ENSG00000018610|Q9H5V9-2|STEEP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	430.253434	858.492316	-0.37246	-0.00016025	1.5748	0.00067756	1.2023	0.0005173	430.25348403765065	32.179	0.89978	32.19	31.624	32.523	0.011795	0.041662	-0.00039113	NaN	9.1829	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443320			76414	942	53295	53383							0.057409181002867626
SRVIQQITD	9	Unmodified	_SRVIQQITD_					0	0	0			REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	REV__sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2725219726562	2	530.293288	1058.57202	-0.57719	-0.00030608	-3.8077	-0.0020192	-4.3849	-0.0023253	530.2936952053124	54.88	0.34172	54.734	54.495	54.837	-0.14609					11	8	2	0	0	0	0.024418	1	5826	5826		37.812	0	1	47940	+		76415	37528	53296	53384	84146	84146					0.04507939983614051
SRVKQDIYK	9	Unmodified	_SRVKQDIYK_					0	0	0			REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF	REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7776489257812	2	568.824755	1135.63496	-0.56792	-0.00032305	0.0012959	7.3713E-07	-0.56662	-0.00032231	568.8247859885246	25.808	0.37751	25.581	25.394	25.771	-0.22683					18	8	3	0	0	0	0.024477	1	1243	1243		44.117	9.9443	1	244280	+		76416	33846	53297	53385	84147	84147					0.07256505771670163
SRVKQDIYK	9	Unmodified	_SRVKQDIYK_					0	0	0			REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF	REV__ENST00000497170.5_1_13:101795259-101997694:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	568.824755	1135.63496	-0.42044	-0.00023916	0.33829	0.00019243	-0.082156	-4.6732E-05	568.8247677873666	25.637	0.3832	25.466	25.282	25.666	-0.17151	-0.028002	0.0003116	NaN	44.117	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185410	+		76417	33846	53297	53385							0.07256505771670163
SRVKQHFK	8	Unmodified	_SRVKQHFK_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C;ENST00000561210.1_1_15:54556427-54709226:+|nuORF	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2880249023438	2	515.30125	1028.58795	-0.14552	-7.4986E-05	4.3559	0.0022446	4.2104	0.0021696	515.3030590674664	34.346	0.11671	34.139	34.043	34.16	-0.20696					4	2	2	0	0	0	0.027866	1	2518	2518		26.796	0	1	22977			76418	5151	53298	53386	84148	84148					0.0747969101118997
SRVKWVPH	8	Unmodified	_SRVKWVPH_					0	0	0			REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|8|1|sense	REV__SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|8|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7550354003906	2	504.790518	1007.56648	0.52947	0.00026727	-4.3112	-0.0021763	-3.7817	-0.001909	504.78822610677616	19.057	0.49482	18.896	18.589	19.084	-0.16079					14	9	2	0	0	0	0.027866	1	344	344		7.6903	3.374	1	185560	+		76419	37651	53299	53387	84149	84149					0.0630030598247231
SRVLERRR	8	Unmodified	_SRVLERRR_					0	0	0			REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.2664794921875	2	536.328331	1070.64211	-0.037391	-2.0054E-05	1.9583	0.0010503	1.9209	0.0010302	536.3293641608095	32.671	0.48881	32.478	32.249	32.738	-0.19261					20	11	2	0	0	0	0.027866	1	2250	2250		30.504	1.3541	1	190560	+		76420	28018	53300	53388	84150	84150					0.10961283162737345
SRVLLRPLS	9	Unmodified	_SRVLLRPLS_					0	0	0		ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7971801757812	2	520.832383	1039.65021	-0.58012	-0.00030214	0.18852	9.8186E-05	-0.3916	-0.00020396	520.8322497086489	44.584	0.50617	44.34	44.01	44.516	-0.2444					28	13	3	0	0	0	0.024541	1	4183	4183		16.473	5.6076	1	188080			76421	16544	53301	53389	84151	84151					0.13197417359515384
SRVLLRPLS	9	Unmodified	_SRVLLRPLS_					0	0	0		ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.832383	1039.65021	-1.4977	-0.00078003	0.6585	0.00034297	-0.83915	-0.00043706	520.8326446962249	44.328	0.39882	44.328	44.12	44.519	0	0.030002	0.0003739	NaN	10.866	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187410			76422	16544	53301	53389							0.13197417359515384
SRVLLRPLS	9	Unmodified	_SRVLLRPLS_					0	0	0		ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.832383	1039.65021	-1.1156	-0.00058105	0.20597	0.00010728	-0.90964	-0.00047377	520.8322730252926	44.326	0.55316	44.222	43.996	44.549	-0.10468	-0.075998	-9.748E-05	NaN	10.866	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238840			76423	16544	53301	53389							0.13197417359515384
SRVLLRPLS	9	Unmodified	_SRVLLRPLS_					0	0	0		ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	ENST00000548070.1_1_12:101801029-101801257:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.832383	1039.65021	-0.90814	-0.00047299	0.30786	0.00016034	-0.60029	-0.00031265	520.8324110876457	44.521	0.4726	44.302	44.073	44.546	-0.21939	0.0039138	8.6478E-06	NaN	10.866	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254160			76424	16544	53301	53389							0.13197417359515384
SRVLLVID	8	Unmodified	_SRVLLVID_					0	0	0		SYN1|p.V411Sfs*256|1|0.16|ENSG00000008056|chrX:47575202-47575202|C/-|frameshift_variant;nc|ENSG00000008056|P17600-2|SYN1;ENSG00000008056|ENST00000295987|SYN1	SYN1|p.V411Sfs*256|1|0.16|ENSG00000008056|chrX:47575202-47575202|C/-|frameshift_variant	SYN1|p.V411Sfs*256|1|0.16|ENSG00000008056|chrX:47575202-47575202|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.7976989746094	2	457.78711	913.559667	-0.72532	-0.00033204	-0.41694	-0.00019087	-1.1423	-0.00052291	457.78748424957575	28.288	1.1114	28.119	27.486	28.598	-0.16897					48	26	4	0	0	0	0.027866	1	1648	1648		68.787	31.628	1	277770			76425	832	53302	53390	84152	84152					0.09942948311231703
SRVLLVID	8	Unmodified	_SRVLLVID_					0	0	0		SYN1|p.V411Sfs*256|1|0.16|ENSG00000008056|chrX:47575202-47575202|C/-|frameshift_variant;nc|ENSG00000008056|P17600-2|SYN1;ENSG00000008056|ENST00000295987|SYN1	SYN1|p.V411Sfs*256|1|0.16|ENSG00000008056|chrX:47575202-47575202|C/-|frameshift_variant	SYN1|p.V411Sfs*256|1|0.16|ENSG00000008056|chrX:47575202-47575202|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.7976379394531	2	457.78711	913.559667	-0.41259	-0.00018888	1.235	0.00056538	0.82244	0.0003765	457.78731762350236	28.408	1.0053	28.256	27.649	28.655	-0.15195					32	24	2	0	0	0	0.027866	1	1635	1635		34.173	0	1	361700			76426	832	53302	53390	84153	84153					0.09942948311231703
SRVLLVKT	8	Unmodified	_SRVLLVKT_					0	0	0			REV__nc|nan|Q5SNV9-3|C1orf167;REV__nc|nan|Q5SNV9-2|C1orf167	REV__nc|nan|Q5SNV9-3|C1orf167	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2742004394531	2	458.302927	914.591301	-0.28318	-0.00012978	0.22105	0.00010131	-0.062131	-2.8475E-05	458.30293661833116	34.119	0.53263	33.912	33.71	34.242	-0.20696					18	13	2	0	0	0	0.027866	1	2533	2533		21.96	0	1	137210	+		76427	37259;28817	53303	53391	84154	84154					0.1305894106518508
SRVLPHPN	8	Unmodified	_SRVLPHPN_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000540447.5_1_12:10856597-10862620:-|nuORF	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.26922607421875	2	460.259051	918.503549	-0.96893	-0.00044596	-0.21096	-9.7097E-05	-1.1799	-0.00054306	460.2588389551449	36.109	1.0232	36.066	35.864	36.887	-0.042458					53	27	3	0	0	0	0.027866	1	2903	2903		29.15	6.1071	1	1476800			76428	1230	53304	53392	84155	84155					0.04103740194409511
SRVLPHPN	8	Unmodified	_SRVLPHPN_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENST00000540447.5_1_12:10856597-10862620:-|nuORF	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.259051	918.503549	-0.052439	-2.4135E-05	-1.1584	-0.00053318	-1.2109	-0.00055732	460.2584048819968	36.224	0.83484	36.262	35.927	36.762	0.038044	0.058948	-0.00048384	NaN	37.159	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1585000			76429	1230	53304	53392							0.04103740194409511
SRVLWAVQ	8	Unmodified	_SRVLWAVQ_					0	0	0			REV__nc|ENSG00000164088|Q96MI6-3|PPM1M	REV__nc|ENSG00000164088|Q96MI6-3|PPM1M	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2898254394531	2	479.777077	957.5396	-0.060988	-2.9261E-05	-1.0749	-0.00051571	-1.1359	-0.00054497	479.77635647048953	52.906	0.66576	53.001	52.529	53.195	0.095669					44	17	3	0	0	0	0.027866	1	5587	5587		16.473	1.6083	1	668060	+		76430	25691	53305	53393	84156	84156					0.05913197371273782
SRVMSYPMVL	10	Oxidation (M)	_SRVM(Oxidation (M))SYPMVL_		SRVM(0.982)SYPM(0.018)VL		SRVM(17)SYPM(-17)VL	0	0	1			REV__TAAR1|p.I140Mfs*7|1|0.32|ENSG00000146399|chr6:132645583-132645584|AA/-|frameshift_variant	REV__TAAR1|p.I140Mfs*7|1|0.32|ENSG00000146399|chr6:132645583-132645584|AA/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.203857421875	3	400.203477	1197.5886	0.98914	0.00039586	0.82626	0.00033067	1.8154	0.00072653	400.2034406610213	25.485	0.90241	25.314	24.869	25.771	-0.17078					75	21	6	0	0	0	0.67616	1	1198	1198		68.846	8.7279	2	2853700	+		76431	24486	53306	53394	84157	84157		727			-0.0022901844629359402
SRVPKSWW	8	Unmodified	_SRVPKSWW_					0	0	0		ENST00000552314.1_1_12:56510620-56510725:+|nuORF	ENST00000552314.1_1_12:56510620-56510725:+|nuORF	ENST00000552314.1_1_12:56510620-56510725:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2578125	2	523.282526	1044.5505	-1.0543	-0.00055167	1.0676	0.00055868	0.013385	7.0039E-06	523.2829118251409	23.993	0.47538	23.993	23.822	24.297	0					13	10	2	0	0	0	0.027866	1	995	995		29.15	0	1	38211			76432	16621	53307	53395	84158	84158					0.03000599745564614
SRVPQAIKS	9	Unmodified	_SRVPQAIKS_					0	0	0			REV__nc|ENSG00000139737|Q8ND83-4|SLAIN1	REV__nc|ENSG00000139737|Q8ND83-4|SLAIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2579650878906	2	493.293091	984.571629	-0.15323	-7.5589E-05	3.0875	0.001523	2.9342	0.0014474	493.29433358201226	53.981	0.43381	53.784	53.556	53.99	-0.19739					21	13	2	0	0	0	0.024427	1	5719	5719		26.693	0	1	324560	+		76433	23963	53308	53396	84159	84159					0.07872565054435654
SRVQRLNL	8	Unmodified	_SRVQRLNL_					0	0	0		CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.7846374511719	2	493.298707	984.582862	0.33166	0.00016361	1.6349	0.0008065	1.9666	0.0009701	493.2995266110283	56.716	0.45653	56.514	56.327	56.783	-0.20209					24	11	3	0	0	0	0.027866	1	6179	6179		17.365	0	1	676000		+	76434	486	53309	53397	84160	84160					0.08995387148559075
SRVRLILA	8	Unmodified	_SRVRLILA_					0	0	0			REV__ENSG00000187736|ENST00000356853|NHEJ1	REV__ENSG00000187736|ENST00000356853|NHEJ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.27923583984375	2	464.308544	926.602535	-1.693	-0.00078607	3.7811	0.0017556	2.0881	0.00096954	464.31020219958606	51.872	0.10784	51.603	51.548	51.656	-0.26903					4	2	2	0	0	0	0.027866	1	5343	5343		19.36	0	1	78423	+		76435	27965	53310	53398	84161	84161					0.13629763159337926
SRVRQGNP	8	Unmodified	_SRVRQGNP_					0	0	0		ENST00000564475.5_2_16:89805250-89805569:-|nuORF;ENST00000568369.5_1_16:89805011-89805599:-|nuORF	ENST00000564475.5_2_16:89805250-89805569:-|nuORF	ENST00000564475.5_2_16:89805250-89805569:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2952880859375	2	457.251757	912.488962	0.093447	4.2729E-05	2.8706	0.0013126	2.964	0.0013553	457.2529349070624	56.825	2.0677	56.825	55.464	57.532	0					103	57	4	0	0	0	0.027866	1	6223	6223		37.159	8.9048	1	5482600			76436	16890	53311	53399	84162	84162					0.02921668046292325
SRVRQGNP	8	Unmodified	_SRVRQGNP_					0	0	0		ENST00000564475.5_2_16:89805250-89805569:-|nuORF;ENST00000568369.5_1_16:89805011-89805599:-|nuORF	ENST00000564475.5_2_16:89805250-89805569:-|nuORF	ENST00000564475.5_2_16:89805250-89805569:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	457.251757	912.488962	0.0090704	4.1475E-06	2.9535	0.0013505	2.9626	0.0013546	457.25298624335977	57.017	1.3432	56.852	56.165	57.508	-0.16432	0.015879	8.5141E-06	NaN	37.159	86	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4164500			76437	16890	53311	53399							0.02921668046292325
SRVRQGNP	8	Unmodified	_SRVRQGNP_					0	0	0		ENST00000564475.5_2_16:89805250-89805569:-|nuORF;ENST00000568369.5_1_16:89805011-89805599:-|nuORF	ENST00000564475.5_2_16:89805250-89805569:-|nuORF	ENST00000564475.5_2_16:89805250-89805569:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.251757	912.488962	0.066865	3.0574E-05	3.0107	0.0013766	3.0776	0.0014072	457.2530258229131	56.734	1.3301	56.832	56.101	57.432	0.097893	-0.0042248	6.0811E-05	NaN	37.159	83	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5312900			76438	16890	53311	53399							0.02921668046292325
SRVRTAFPGR	10	Unmodified	_SRVRTAFPGR_					0	0	0			REV__ENST00000300231.5_1_15:43809871-43812871:+|nuORF	REV__ENST00000300231.5_1_15:43809871-43812871:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.245849609375	2	573.828163	1145.64177	-0.014709	-8.4406E-06	3.1467	0.0018057	3.132	0.0017972	573.829899825398	73.935	0.35883	73.658	73.365	73.724	-0.27689					14	7	3	0	0	0	0.03519	1	8670	8670		36.447	0	1	293490	+		76439	30044	53312	53400	84163	84163					0.07477863442886701
SRVRTQSLY	9	Unmodified	_SRVRTQSLY_					0	0	0		ENST00000588831.5_1_19:36428245-36428407:+|nuORF	ENST00000588831.5_1_19:36428245-36428407:+|nuORF	ENST00000588831.5_1_19:36428245-36428407:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2769775390625	2	555.306729	1108.59891	-0.39167	-0.0002175	-0.3529	-0.00019597	-0.74456	-0.00041346	555.3062750566882	41.791	0.69481	41.559	41.312	42.007	-0.23114					37	18	3	0	0	0	0.024495	1	3681	3681		34.173	7.4796	1	490130			76440	17294	53313	53401	84164	84164					0.04895048594812579
SRVSFLEKV	9	Unmodified	_SRVSFLEKV_					0	0	0			REV__ENST00000488610.5_1_9:138392556-138393921:+|nuORF	REV__ENST00000488610.5_1_9:138392556-138393921:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.8087158203125	2	532.808574	1063.60259	-0.67356	-0.00035888	-1.847	-0.0009841	-2.5206	-0.001343	532.8074555833297	46.016	2.2945	45.754	45.35	47.644	-0.26118					184	62	5	0	0	0	0.16468	1	4431	4431		96.19	5.5896	1	64307000	+		76441	22628	53314	53402	84165	84165					0.07333718368658992
SRVSRSSF	8	Unmodified	_SRVSRSSF_					0	0	0			REV__ENST00000293883.8_3_16:740088-740325:-|nuORF	REV__ENST00000293883.8_3_16:740088-740325:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7722473144531	2	463.246141	924.477728	-0.3826	-0.00017724	0.44719	0.00020716	0.064588	2.992E-05	463.2463080753413	26.601	0.4942	26.578	26.324	26.818	-0.023087					17	11	2	0	0	0	0.027866	1	1373	1373		30.504	11.144	1	122970	+		76442	29961	53315	53403	84166	84166					0.01246845952152853
SRVSSLHGI	9	Unmodified	_SRVSSLHGI_					0	0	0		STK32B|p.D276G|1|0.21|ENSG00000152953|chr4:5460146-5460146|A/G|missense_variant	STK32B|p.D276G|1|0.21|ENSG00000152953|chr4:5460146-5460146|A/G|missense_variant	STK32B|p.D276G|1|0.21|ENSG00000152953|chr4:5460146-5460146|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77703857421875	2	478.269616	954.524678	0.028173	1.3474E-05	2.1495	0.001028	2.1777	0.0010415	478.26979682736624	27.756	0.30813	27.756	27.616	27.924	0					19	7	4	0	0	0	0.023239	1	1562	1562		54.776	19.158	1	322910			76443	37974	53316	53404	84167	84167					0.045597055032772005
SRVSVGRGCS	10	Unmodified	_SRVSVGRGCS_					0	0	0			REV__ENSG00000185761|ENST00000330475|ADAMTSL5	REV__ENSG00000185761|ENST00000330475|ADAMTSL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2976989746094	2	504.256182	1006.49781	-0.080403	-4.0544E-05	-0.63972	-0.00032258	-0.72012	-0.00036313	504.25574243425575	36.627	0.36497	36.41	36.126	36.491	-0.21661					18	8	3	0	0	0	0.03519	1	2883	2883		30.318	17.359	1	125220	+		76444	27794	53317	53405	84168	84168					-0.005177263795303588
SRVSVGRGCS	10	Unmodified	_SRVSVGRGCS_					0	0	0			REV__ENSG00000185761|ENST00000330475|ADAMTSL5	REV__ENSG00000185761|ENST00000330475|ADAMTSL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2975158691406	2	504.256182	1006.49781	1.4795	0.00074605	-2.4983	-0.0012598	-1.0188	-0.00051375	504.25465134391766	36.58	0.48334	36.382	36.093	36.576	-0.19829					18	11	2	0	0	0	0.03519	1	2889	2889		32.812	16.339	1	134440	+		76445	27794	53317	53405	84169	84169					-0.005177263795303588
SRVTQLCTY	9	Unmodified	_SRVTQLCTY_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.214599609375	2	535.768591	1069.52263	-0.77096	-0.00041306	-0.71097	-0.00038091	-1.4819	-0.00079397	535.7680089944367	29.289	0.71339	29.14	28.912	29.626	-0.14952					31	16	3	0	0	0	0.024523	1	1806	1806		29.15	0	1	139130			76446	3396	53318	53406	84170	84170					-0.009350912968329794
SRVTQLCTY	9	Unmodified	_SRVTQLCTY_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	535.768591	1069.52263	-1.1175	-0.00059873	-0.11239	-6.0218E-05	-1.2299	-0.00065895	535.7680823830284	29.486	0.38786	29.24	29.011	29.399	-0.24524	0.04443	0.00061014	NaN	37.159	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150440			76447	3396	53318	53406							-0.009350912968329794
SRVTQLCTY	9	Unmodified	_SRVTQLCTY_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.768591	1069.52263	-0.94834	-0.00050809	-1.0223	-0.0005477	-1.9706	-0.0010558	535.7678152376031	29.38	0.42461	29.208	28.981	29.406	-0.17258	0.01165	-0.00036482	NaN	37.159	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74803			76448	3396	53318	53406							-0.009350912968329794
SRVTSLANL	9	Unmodified	_SRVTSLANL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2866516113281	2	480.777274	959.539994	-0.50483	-0.00024271	-0.68795	-0.00033075	-1.1928	-0.00057346	480.77795897350967	63.039	0.25068	62.799	62.654	62.905	-0.23926					6	5	2	0	0	0	0.024209	1	7337	7337		76.774	5.4784	1	129130			76449	7178	53319	53407	84171	84171					0.058605723004689025
SRVVAFGA	8	Unmodified	_SRVVAFGA_					0	0	0			REV__nc|ENSG00000182648|Q8NI28|RNF32-DT	REV__nc|ENSG00000182648|Q8NI28|RNF32-DT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.1874694824219	2	403.729595	805.444637	0.61393	0.00024786	0.5826	0.00023521	1.1965	0.00048307	403.729490902343	36.723	0.43821	36.522	36.327	36.766	-0.20103					16	10	2	0	0	0	0.027866	1	2884	2884		18.324	0	1	105040	+		76450	36996	53320	53408	84172	84172					0.03413263900097263
SRVVKQEM	8	Unmodified	_SRVVKQEM_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7925109863281	2	488.765852	975.51715	-1.1516	-0.00056286	2.0534	0.0010036	0.90181	0.00044077	488.7684511765881	35.813	0.2554	35.771	35.608	35.864	-0.042458					8	6	2	0	0	0	0.027866	1	2776	2776		21.96	1.013	1	51453	+		76451	23341	53321	53409	84173	84173					0.028412299113597328
SRVVLKLD	8	Unmodified	_SRVVLKLD_					0	0	0			REV__ENSG00000168246|ENST00000393792|UBTD2	REV__ENSG00000168246|ENST00000393792|UBTD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.31549072265625	2	465.292559	928.570566	-0.85932	-0.00039984	0.99423	0.00046261	0.13491	6.2772E-05	465.29281646579693	61.026	0.60742	60.85	60.597	61.205	-0.1761					29	14	3	0	0	0	0.027866	1	6841	6841		23.042	0	1	874890	+		76452	26241	53322	53410	84174	84174					0.10342350685516521
SRVVSPVID	9	Unmodified	_SRVVSPVID_					0	0	0		ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3114929199219	2	486.279649	970.544745	-0.90695	-0.00044103	0.80838	0.0003931	-0.098576	-4.7935E-05	486.2799660256159	40.633	0.30313	40.657	40.494	40.797	0.023006					14	8	2	0	0	0	0.024466	1	3517	3517		31.53	8.4873	1	399890			76453	4518	53323	53411	84175	84175					0.05829456443234449
SRVVVLLVL	9	Unmodified	_SRVVVLLVL_					0	0	0		ENSG00000147408|ENST00000692225|CSGALNACT1;nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1	ENSG00000147408|ENST00000692225|CSGALNACT1	ENSG00000147408|ENST00000692225|CSGALNACT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2926330566406	2	499.342052	996.669552	-0.71128	-0.00035517	-1.3056	-0.00065193	-2.0169	-0.0010071	499.3410606771839	47.366	0.31047	47.425	47.179	47.489	0.059097					11	8	2	0	0	0	0.024209	1	4687	4687		47.657	1.7054	1	61189			76454	5961	53324	53412	84176	84176					0.17108373650421527
SRVYHMLAR	9	Unmodified	_SRVYHMLAR_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000547407.5_1_16:706354-706850:+|nuORF;ENST00000546516.5_1_16:705169-713132:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7814331054688	2	566.805842	1131.59713	-1.0469	-0.00059339	1.9583	0.00111	0.91141	0.00051659	567.3080487945548	78.443	0.20792	78.459	78.356	78.564	0.015907					6	4	2	0	0	0	0.02435	1	9625	9625		19.997	15.091	1	37713			76455	6908	53325	53413	84177	84177					0.036597163051965254
SRWAACPL	8	Unmodified	_SRWAACPL_					0	0	0		ENST00000314888.9_1_9:35719849-35720121:-|nuORF	ENST00000314888.9_1_9:35719849-35720121:-|nuORF	ENST00000314888.9_1_9:35719849-35720121:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.228515625	2	452.228905	902.443257	0.34718	0.00015701	-2.3205	-0.0010494	-1.9733	-0.00089237	452.228116985638	102.86	1.0716	102.85	102.46	103.53	-0.0046005					64	25	5	0	0	0	1.0133	1	13092	13092		35.201	0	1	3369600			76456	12125	53326	53414	84178	84178					-0.011866934603403934
SRWDGIKTQM	10	Unmodified	_SRWDGIKTQM_					0	0	0			REV__ENST00000446425.2_1_2:24222784-24222829:+|nuORF	REV__ENST00000446425.2_1_2:24222784-24222829:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8878173828125	3	407.873007	1220.59719	0.17695	7.2174E-05	-4.0002	-0.0016316	-3.8233	-0.0015594	407.8705661401175	33.66	0.52008	33.429	33.153	33.673	-0.23107					17	12	2	0	0	0	0.03519	1	2431	2431		27.644	5.8635	1	58145	+		76457	32628	53327	53415	84179	84179					-0.004283284854636804
SRWDMFHS	8	Unmodified	_SRWDMFHS_					0	0	0		ENST00000263388.6_1_19:15270656-15271010:-|nuORF	ENST00000263388.6_1_19:15270656-15271010:-|nuORF	ENST00000263388.6_1_19:15270656-15271010:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7976684570312	2	533.232176	1064.4498	0.32672	0.00017422	2.1547	0.001149	2.4815	0.0013232	533.233434333684	55.555	0.32578	55.555	55.284	55.61	0					12	8	2	0	0	0	0.027866	1	6103	6103		34.173	11.13	1	83818			76458	11532	53328	53416	84180	84180					-0.07984800299595918
SRWDQGLF	8	Unmodified	_SRWDQGLF_					0	0	0			REV__ENST00000444990.5_1_2:243030866-243058384:+|nuORF	REV__ENST00000444990.5_1_2:243030866-243058384:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7665100097656	2	504.748516	1007.48248	-0.048668	-2.4565E-05	1.2788	0.00064545	1.2301	0.00062089	504.74910781968697	63.652	0.60785	63.424	63.174	63.782	-0.22773					26	15	3	0	0	0	0.027866	1	7207	7207		68.787	20.871	1	219820	+		76459	32602	53329	53417	84181	84181					-0.020962699050983247
SRWDQGLF	8	Unmodified	_SRWDQGLF_					0	0	0			REV__ENST00000444990.5_1_2:243030866-243058384:+|nuORF	REV__ENST00000444990.5_1_2:243030866-243058384:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.76678466796875	2	504.748516	1007.48248	-0.17066	-8.614E-05	3.5089	0.0017711	3.3383	0.001685	504.7500365476386	66.167	0.5907	65.926	65.748	66.338	-0.24145					21	14	2	0	0	0	0.027866	1	7561	7561		71.296	0	1	715690	+		76460	32602	53329	53417	84182	84182					-0.020962699050983247
SRWFCVAT	8	Unmodified	_SRWFCVAT_					0	0	0			REV__nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	REV__nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2883605957031	2	485.234187	968.453822	3.3492	0.0016251	2.5432	0.001234	5.8923	0.0028592	485.23595261812136	17.869	0.1945	17.869	17.746	17.94	0					5	3	2	0	0	0	0.027866	1	221	221		44.117	3.3386	1	11911	+		76461	23106	53330	53418	84183	84183					-0.03166710805896855
SRWKRICKLCY	11	Unmodified	_SRWKRICKLCY_					0	0	0			REV__ENST00000546624.2_1_12:88177101-88177509:-|nuORF	REV__ENST00000546624.2_1_12:88177101-88177509:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2372131347656	3	485.92857	1454.76388	-0.33285	-0.00016174	-1.5337	-0.00074525	-1.8665	-0.00090699	486.2617822217368	35.432	0.43047	35.217	34.987	35.418	-0.21555					16	10	2	0	0	0	0.024823	1	2713	2713		11.455	0	1	116730	+		76462	23379	53331	53419	84184	84184					0.054688211386292096
SRWPSSATL	9	Unmodified	_SRWPSSATL_					0	0	0		ENST00000578774.1_1_17:38517361-38519486:+|nuORF	ENST00000578774.1_1_17:38517361-38519486:+|nuORF	ENST00000578774.1_1_17:38517361-38519486:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7509765625	2	502.761623	1003.50869	-0.38725	-0.00019469	3.1258	0.0015715	2.7385	0.0013768	502.7633074817984	33.841	1.1883	33.641	32.528	33.717	-0.20019					44	29	3	0	0	0	0.024405	1	2439	2439		20.947	0	1	344580			76463	17134	53332	53420	84185	84185					0.0070799926638756006
SRWRAKGQ	8	Unmodified	_SRWRAKGQ_					0	0	0		ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-2|ALDH1L1;nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF	ENSG00000144908|ENST00000393434|ALDH1L1	ENSG00000144908|ENST00000393434|ALDH1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7793273925781	2	494.7754	987.536246	-0.25675	-0.00012703	0.82793	0.00040964	0.57118	0.00028261	494.7755255555453	24.103	0.39835	23.887	23.778	24.177	-0.2151					12	8	2	0	0	0	0.027866	1	1027	1027		27.882	0	1	127210			76464	5782	53333	53421	84186	84186					0.041979473172773396
SRWRPRGRRRE	11	Unmodified	_SRWRPRGRRRE_					0	0	0		ENST00000552857.5_1_12:53895133-53895196:+|nuORF	ENST00000552857.5_1_12:53895133-53895196:+|nuORF	ENST00000552857.5_1_12:53895133-53895196:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.77886962890625	3	504.622407	1510.84539	-0.58253	-0.00029396	0.96132	0.00048511	0.3788	0.00019115	504.9571615645925	23.992	0.38776	23.992	23.822	24.209	0					17	8	3	0	0	0	0.024735	1	1011	1011		34.087	10.709	1	59702			76465	16626	53334	53422	84187	84187					0.11040400937054073
SRWRPRGRRRE	11	Unmodified	_SRWRPRGRRRE_					0	0	0		ENST00000552857.5_1_12:53895133-53895196:+|nuORF	ENST00000552857.5_1_12:53895133-53895196:+|nuORF	ENST00000552857.5_1_12:53895133-53895196:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	504.622407	1510.84539	0.0098238	4.9573E-06	0.62896	0.00031739	0.63878	0.00032234	504.62270486145474	24.274	0.4351	24.058	23.822	24.257	-0.2151	0.060506	-0.00013483	NaN	34.087	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123420			76466	16626	53334	53422							0.11040400937054073
SRWRPRGRRRE	11	Unmodified	_SRWRPRGRRRE_					0	0	0		ENST00000552857.5_1_12:53895133-53895196:+|nuORF	ENST00000552857.5_1_12:53895133-53895196:+|nuORF	ENST00000552857.5_1_12:53895133-53895196:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	504.622407	1510.84539	-0.25037	-0.00012634	0.87827	0.00044319	0.6279	0.00031685	504.9570232292966	24.053	0.43344	23.873	23.651	24.084	-0.17989	-0.12511	0.00024259	NaN	34.087	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94206			76467	16626	53334	53422							0.11040400937054073
SRWTTYRGPE	10	Unmodified	_SRWTTYRGPE_					0	0	0		ENST00000469065.1_1_1:156130802-156132957:+|nuORF;nc|ENSG00000196189|Q9H3S1-2|SEMA4A;ENSG00000196189|ENST00000368285|SEMA4A	ENST00000469065.1_1_1:156130802-156132957:+|nuORF	ENST00000469065.1_1_1:156130802-156132957:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.8509521484375	3	418.207155	1251.59963	-0.46174	-0.0001931	-3.5832	-0.0014985	-4.045	-0.0016916	418.2056922658726	30.888	0.21557	30.647	30.453	30.669	-0.24109					6	4	2	0	0	0	0.03519	1	1982	1982		28.577	0	1	30106			76468	9833	53335	53423	84188	84188					-0.0161015675616909
SRWVGHLVS	9	Unmodified	_SRWVGHLVS_					0	0	0			REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	REV__ENST00000483224.5_1_3:66354925-66428228:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.75146484375	2	520.785433	1039.55631	-0.030641	-1.5958E-05	-1.8363	-0.00095629	-1.8669	-0.00097225	520.7844016422541	42.145	0.52085	41.915	41.58	42.101	-0.23029					23	14	2	0	0	0	0.024495	1	3790	3790		19.997	3.5236	1	227160	+		76469	24357	53336	53424	84189	84189					0.0381169825723191
SRWVVLGP	8	Unmodified	_SRWVVLGP_					0	0	0			REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2820739746094	2	457.266345	912.518136	-0.7051	-0.00032242	-3.2595	-0.0014905	-3.9646	-0.0018129	457.2646765695226	84.073	1.1851	84	83.657	84.842	-0.072769					64	27	4	0	0	0	0.027866	1	10456	10456		33.516	0	1	543240	+		76470	32688	53337	53425	84190	84190					0.058378123425768536
SRWVVLGP	8	Unmodified	_SRWVVLGP_					0	0	0			REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	REV__ENST00000449849.2_1_2:203789500-203789902:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	457.266345	912.518136	0.4907	0.00022438	-4.8226	-0.0022052	-4.3319	-0.0019808	457.26409040197166	84.209	1.7383	84.071	83.672	85.41	-0.13789	0.040713	-0.00021766	NaN	42.474	75	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685690	+		76471	32688	53337	53425							0.058378123425768536
SRYARVKV	8	Unmodified	_SRYARVKV_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.754150390625	2	489.795801	977.577048	0.054884	2.6882E-05	3.2976	0.0016151	3.3525	0.001642	489.79722616963454	51.58	0.51614	51.461	51.242	51.758	-0.11875					25	13	2	0	0	0	0.027866	1	5282	5282		44.117	22.157	1	224670	+		76472	23867	53338	53426	84191	84191					0.08736288636896461
SRYARVKV	8	Unmodified	_SRYARVKV_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7538146972656	2	489.795801	977.577048	0.92929	0.00045516	2.7148	0.0013297	3.644	0.0017848	489.79693011148896	51.738	0.51678	51.554	51.298	51.815	-0.18404					24	13	2	0	0	0	0.027866	1	5287	5287		63.306	7.8021	1	256220	+		76473	23867	53338	53426	84192	84192					0.08736288636896461
SRYARVKV	8	Unmodified	_SRYARVKV_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.795801	977.577048	-1.7535	-0.00085886	5.0053	0.0024516	3.2518	0.0015927	489.79807574707155	51.906	0.58296	51.637	51.361	51.944	-0.26903	0.086475	0.0014352	NaN	44.117	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219210	+		76474	23867	53338	53426							0.08736288636896461
SRYFLHQSRE	10	Unmodified	_SRYFLHQSRE_					0	0	0		ENSG00000181867|ENST00000321339|FTMT	ENSG00000181867|ENST00000321339|FTMT	ENSG00000181867|ENST00000321339|FTMT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.2665100097656	3	441.558187	1321.65273	-0.55947	-0.00024704	-1.8593	-0.00082101	-2.4188	-0.001068	441.55739607753327	60.572	0.56674	60.366	60.091	60.658	-0.20599					18	13	2	0	0	0	0.03519	1	6738	6738		21.78	7.0868	1	92583			76475	9077	53339	53427	84193	84193					0.004772210265173271
SRYGPAESY	9	Unmodified	_SRYGPAESY_					0	0	0			REV__ENSG00000120341|ENST00000308284|SEC16B;REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	REV__ENSG00000120341|ENST00000308284|SEC16B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2608642578125	2	515.235439	1028.45632	-1.4486	-0.00074635	-2.1312	-0.001098	-3.5797	-0.0018444	515.2334556562846	29.73	0.19962	29.809	29.724	29.924	0.078344					5	4	2	0	0	0	0.024484	1	1811	1811		23.523	9.7474	1	50834	+		76476	22530;30410	53340	53428	84194	84194					-0.05676583867216323
SRYHVDTK	8	Unmodified	_SRYHVDTK_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF;REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7870788574219	2	503.259248	1004.50394	-0.26599	-0.00013386	0.23458	0.00011805	-0.03141	-1.5807E-05	503.25927564832244	37.223	0.90826	37.014	36.525	37.434	-0.2092					42	22	3	0	0	0	0.027866	1	3015	3015		25.574	1.3713	1	1180200	+		76477	23824;23564	53341	53429	84195	84195					0.0018711512360596316
SRYIYEPWNAP	11	Unmodified	_SRYIYEPWNAP_					0	0	0		nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	nc|ENSG00000121671|Q49AN0-2|CRY2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.8932189941406	3	465.894577	1394.6619	-0.76127	-0.00035467	-2.5152	-0.0011718	-3.2765	-0.0015265	465.89340150872135	30.072	1.2207	29.893	29.57	30.791	-0.17818					74	28	4	0	0	0	1.0341	1	1873	1873		29.245	3.3533	1	2256500			76478	3879	53342	53430	84196	84196					-0.019644304078155983
SRYNIFND	8	Unmodified	_SRYNIFND_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.7802124023438	2	514.743431	1027.47231	-0.050493	-2.5991E-05	-0.36258	-0.00018663	-0.41307	-0.00021262	514.7432388353501	74.643	2.8284	74.367	73.887	76.716	-0.27573					98	68	2	0	0	0	0.027866	1	8956	8956		9.1829	0	1	213370	+		76479	21802	53343	53431	84197	84197					-0.04032877630334042
SRYSFNVAAER	11	Unmodified	_SRYSFNVAAER_					0	0	0			REV__nc|ENSG00000087460|P84996|GNAS	REV__nc|ENSG00000087460|P84996|GNAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.75921630859375	3	433.886192	1298.63675	-0.26699	-0.00011585	-2.1656	-0.00093962	-2.4326	-0.0010555	433.88515315163863	20.382	2.1685	20.277	19.932	22.1	-0.10477					94	44	3	0	0	0	0.02473	1	687	687		29.245	5.0132	1	254560	+		76480	36490	53344	53432	84198	84198					-0.0006248521037832688
SRYSFQAEI	9	Unmodified	_SRYSFQAEI_					0	0	0		ENST00000220913.9_1_8:141525461-141525764:+|nuORF	ENST00000220913.9_1_8:141525461-141525764:+|nuORF	ENST00000220913.9_1_8:141525461-141525764:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.7743530273438	2	550.772188	1099.52982	-0.57343	-0.00031583	3.2391	0.001784	2.6657	0.0014682	550.7739733581848	55.231	1.1465	55.081	54.711	55.857	-0.15036					118	31	7	0	0	0	0.2508	1	6106	6106		82.241	0	1	24595000			76481	11181	53345	53433	84199	84199					-0.015960354247454234
SRYVLLLS	8	Unmodified	_SRYVLLLS_					0	0	0			REV__ENST00000534766.1_1_11:45967481-45970454:-|nuORF	REV__ENST00000534766.1_1_11:45967481-45970454:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.7584533691406	2	475.78711	949.559667	1.4783	0.00070337	-1.4579	-0.00069364	0.020442	9.7261E-06	475.78619637772124	36.704	0.68266	36.495	36.24	36.923	-0.2092					34	16	3	0	0	0	0.027866	1	2937	2937		23.042	10.836	1	449110	+		76482	34652	53346	53434	84200	84200					0.08286948311251763
SRYYFGCC	8	Unmodified	_SRYYFGCC_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3040466308594	2	499.69658	997.378608	-0.50807	-0.00025388	3.7252	0.0018615	3.2172	0.0016076	499.69813528257816	60.431	0.38496	60.217	59.962	60.347	-0.21339					13	9	2	0	0	0	0.027866	1	6901	6901		26.796	0	1	89072			76483	9995	53347	53435	84201	84201					-0.12018636328627963
SRYYITRA	8	Unmodified	_SRYYITRA_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2608642578125	2	515.277441	1028.54033	-1.3806	-0.00071141	2.25	0.0011594	0.86938	0.00044797	515.2813106321308	29.724	0.63929	29.803	29.327	29.966	0.078344					26	15	3	0	0	0	0.027866	1	1811	1811		14.865	0	1	180340			76484	4527	53348	53436	84202	84202					0.027199920203202055
SSAARQGCL	9	Unmodified	_SSAARQGCL_					0	0	0			REV__ENST00000537209.5_1_1:168104167-168104254:-|nuORF	REV__ENST00000537209.5_1_1:168104167-168104254:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7456359863281	2	446.718901	891.42325	-0.36534	-0.00016321	-4.2334	-0.0018911	-4.5987	-0.0020543	446.71704209548164	25.011	0.39443	24.784	24.581	24.975	-0.22683					13	8	2	0	0	0	0.024466	1	1132	1132		18.324	0.95945	1	42462	+		76485	34696	53349	53437	84203	84203					-0.026804891909250728
SSAASPPQDPL	11	Unmodified	_SSAASPPQDPL_					0	0	0		ENST00000479747.1_1_9:130678457-130678682:-|nuORF	ENST00000479747.1_1_9:130678457-130678682:-|nuORF	ENST00000479747.1_1_9:130678457-130678682:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.260498046875	2	535.261653	1068.50875	-0.38331	-0.00020517	-1.4618	-0.00078245	-1.8451	-0.00098762	535.2609549621018	24.492	1.7442	24.277	23.954	25.698	-0.2151					108	40	5	0	0	0	1.0017	1	1118	1118		36.447	0.82846	1	25489000			76486	15178	53350	53438	84204	84204					-0.02276045524286019
SSAASVGQLN	10	Unmodified	_SSAASVGQLN_					0	0	0			REV__nc|ENSG00000110171|O75382-4|TRIM3	REV__nc|ENSG00000110171|O75382-4|TRIM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.6079406738281	2	467.235439	932.456324	0.53835	0.00025154	2.6461	0.0012363	3.1844	0.0014879	467.2364373651507	100.98	0.85016	100.85	100.65	101.5	-0.12576					29	20	2	0	0	0	0.03519	1	12515	12515		28.081	0	1	63016	+		76487	21843	53351	53439	84205	84205					-0.012605838672357095
SSAGQGWGPPS	11	Unmodified	_SSAGQGWGPPS_					0	0	0			REV__ENST00000471206.1_1_9:117379439-117386435:+|nuORF	REV__ENST00000471206.1_1_9:117379439-117386435:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.77490234375	2	515.733063	1029.45157	-0.50631	-0.00026112	-2.9738	-0.0015337	-3.4801	-0.0017948	515.7312581966632	68.547	1.1874	68.285	67.855	69.043	-0.26165					60	28	3	0	0	0	0.024759	1	7985	7985		47.96	2.0076	1	582730	+		76488	33169	53352	53440	84206	84206					-0.06197468010009288
SSAGQGWGPPS	11	Unmodified	_SSAGQGWGPPS_					0	0	0			REV__ENST00000471206.1_1_9:117379439-117386435:+|nuORF	REV__ENST00000471206.1_1_9:117379439-117386435:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.77490234375	2	515.733063	1029.45157	-0.90692	-0.00046773	0.03843	1.982E-05	-0.86849	-0.00044791	515.7328867935942	69.142	0.83062	68.881	68.626	69.457	-0.26166					34	19	2	0	0	0	0.024759	1	7985	7985		47.96	5.4851	1	392650	+		76489	33169	53352	53440	84207	84207					-0.06197468010009288
SSAHKVSGL	9	Unmodified	_SSAHKVSGL_					0	0	0		ENST00000468530.1_1_2:46608783-46611619:+|nuORF	ENST00000468530.1_1_2:46608783-46611619:+|nuORF	ENST00000468530.1_1_2:46608783-46611619:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2427673339844	2	443.243067	884.47158	-1.0212	-0.00045263	0.79001	0.00035017	-0.23116	-0.00010246	443.2434356810486	38.266	1.6567	38.266	37.803	39.459	0					88	46	3	0	0	0	0.2508	1	3171	3171		82.241	7.7239	1	23284000			76490	14873	53353	53441	84208	84208					0.024723277206248895
SSAHMQALNY	10	Unmodified	_SSAHMQALNY_					0	0	0			REV__SEL1L|p.G532S|1|0.78|ENSG00000071537|chr14:81487428-81487428|C/T|missense_variant	REV__SEL1L|p.G532S|1|0.78|ENSG00000071537|chr14:81487428-81487428|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2794189453125	2	561.255848	1120.49714	0.3042	0.00017074	-3.5744	-0.0020061	-3.2701	-0.0018354	561.2536151275222	85.262	0.16248	85.067	84.967	85.129	-0.19508					6	3	2	0	0	0	0.03519	1	10315	10315		34.173	0	1	100360	+		76491	37473	53354	53442	84209	84209					-0.05828565819274445
SSAIPTSTI	9	Unmodified	_SSAIPTSTI_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.7376708984375	2	438.737283	875.460012	0.15734	6.9032E-05	0.062523	2.7431E-05	0.21986	9.6463E-05	438.7371478644558	61.55	0.89451	61.622	61.131	62.026	0.071125					53	23	4	0	0	0	0.096521	1	7049	7049		111.65	5.2331	1	2162400			76492	9025	53355	53443	84210	84210					0.01730085906626755
SSAISEVTQP	10	Unmodified	_SSAISEVTQP_					0	0	0		nc|ENSG00000141052|Q8IZQ8-2|MYOCD;MYOCD|p.L825Afs*4|1|0.18|ENSG00000141052|chr17:12763300-12763322|CTTCTAAAAATTGGGAGCGAAGA/-|frameshift_variant;MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7872619628906	2	509.756204	1017.49785	-1.0408	-0.00053056	1.4862	0.00075758	0.44536	0.00022702	509.7568282232889	60.573	0.77628	60.573	60.256	61.032	0					29	20	2	0	0	0	0.03519	1	6926	6926		42.864	4.0581	1	553570			76493	5467	53356	53444	84211	84211					-0.010194478985567912
SSAKKSSL	8	Unmodified	_SSAKKSSL_					0	0	0			REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	REV__nc|ENSG00000108309|Q59EK9-4|RUNDC3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2324523925781	2	404.232168	806.449782	0.41357	0.00016718	-3.1091	-0.0012568	-2.6955	-0.0010896	404.2302553298039	87.257	1.8567	87.078	86.349	88.206	-0.17875					110	44	3	0	0	0	1.0574	1	10601	10601		20.947	5.3051	1	982170	+		76494	21723	53357	53445	84212	84212					0.03881522972062612
SSAKSSLFTM	10	Unmodified	_SSAKSSLFTM_					0	0	0			REV__nc|ENSG00000148908|O43665-2|RGS10	REV__nc|ENSG00000148908|O43665-2|RGS10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.281494140625	2	529.762975	1057.5114	-1.2254	-0.00064919	-1.1775	-0.0006238	-2.4029	-0.001273	529.7624227341267	62.304	0.42052	62.126	61.923	62.343	-0.17782					22	10	3	0	0	0	0.03519	1	6980	6980		14.865	3.3539	1	313320	+		76495	24645	53358	53446	84213	84213					-0.01505913390974456
SSALFTDI	8	Unmodified	_SSALFTDI_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.5790710449219	2	427.218726	852.422899	-0.33068	-0.00014127	-2.4544	-0.0010486	-2.7851	-0.0011898	427.2175848739633	36.018	0.85758	35.813	35.544	36.402	-0.20518					33	23	2	0	0	0	0.027866	1	2814	2814		12.207	0	1	467030	+		76496	20677	53359	53447	84214	84214					-0.00921585639150635
SSALFTDI	8	Unmodified	_SSALFTDI_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.5793151855469	2	427.218726	852.422899	0.57324	0.0002449	-3.34	-0.0014269	-2.7667	-0.001182	427.2171173547842	35.762	0.72699	35.564	35.366	36.093	-0.19829					40	20	3	0	0	0	0.027866	1	2755	2755		12.207	0	1	1070700	+		76497	20677	53359	53447	84215	84215					-0.00921585639150635
SSALGYLTY	9	Unmodified	_SSALGYLTY_					0	0	0		ENSG00000151687|ENST00000684021|ANKAR;ENST00000441800.5_1_2:190593140-190625849:+|nuORF	ENSG00000151687|ENST00000684021|ANKAR	ENSG00000151687|ENST00000684021|ANKAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7920227050781	2	487.745108	973.475663	0.34793	0.0001697	2.6664	0.0013005	3.0144	0.0014702	487.7459408405487	78.651	0.45718	78.459	78.176	78.633	-0.1921					16	10	2	0	0	0	0.024294	1	9671	9671		45.952	5.3793	1	80456			76498	6218	53360	53448	84216	84216					-0.01213627576350973
SSALKTHEP	9	Unmodified	_SSALKTHEP_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-4|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-4|KCNQ5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3118591308594	2	485.253631	968.49271	-1	-0.00048526	1.3959	0.00067735	0.39585	0.00019209	485.254068999369	43.59	0.72382	43.59	43.332	44.056	0					37	19	3	0	0	0	0.023837	1	4166	4166		64.207	0	1	1630800	+		76499	27793	53361	53449	84217	84217					0.007202930294624821
SSALPSLPI	9	Unmodified	_SSALPSLPI_					0	0	0		ENST00000401533.6_1_2:26412041-26412347:+|nuORF	ENST00000401533.6_1_2:26412041-26412347:+|nuORF	ENST00000401533.6_1_2:26412041-26412347:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.75677490234375	2	442.758018	883.501483	-0.20827	-9.2212E-05	-2.6651	-0.00118	-2.8733	-0.0012722	442.7567721603265	21.238	0.73259	21.148	20.766	21.499	-0.090094					36	14	4	0	0	0	0.90698	1	635	635		31.955	0	1	427040			76500	13671	53362	53450	84218	84218					0.055072666659384595
SSALRDRV	8	Unmodified	_SSALRDRV_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.2522277832031	2	452.253966	902.493378	-0.0051809	-2.3431E-06	-4.3373	-0.0019615	-4.3424	-0.0019639	452.25200102854944	74.941	0.86217	74.951	74.607	75.47	0.010376					38	21	2	0	0	0	0.093853	3	9107	9096;9107;9119		162.31	19.199	1	5823500	+		76501	21832	53363	53451	84219;84220;84221	84220					0.03823132469176471
SSANIGRL	8	Unmodified	_SSANIGRL_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	408.8852233886719	2	409.229959	816.445365	0.52559	0.00021509	2.3619	0.00096654	2.8874	0.0011816	409.2298647665489	23.155	0.32731	22.953	22.687	23.014	-0.20193					10	6	2	0	0	0	0.027866	1	889	889		7.6903	0	1	18054	+		76502	23137	53364	53452	84222	84222					0.0298005854914436
SSAPALPLL	9	Unmodified	_SSAPALPLL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.25140380859375	2	434.760561	867.506569	-0.31908	-0.00013872	-3.7634	-0.0016362	-4.0824	-0.0017749	434.7590415659633	92.316	0.55128	92.316	91.902	92.454	0					19	13	2	0	0	0	0.024436	1	11668	11668		23.042	0	1	62702	+		76503	22884	53365	53453	84223	84223					0.06751570528570028
SSAPALPLL	9	Unmodified	_SSAPALPLL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.748046875	2	434.760561	867.506569	0.75277	0.00032727	-0.062659	-2.7242E-05	0.69011	0.00030003	434.7602275572193	66.153	0.69602	66.153	65.566	66.262	0					33	17	3	0	0	0	0.022127	1	7783	7783		57.811	0	1	707700	+		76504	22884	53365	53453	84224	84224					0.06751570528570028
SSAPESGTPMG	11	Unmodified	_SSAPESGTPMG_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.7645263671875	2	510.718764	1019.42298	-0.87379	-0.00044626	1.6585	0.00084703	0.78472	0.00040077	510.7191097118318	25.716	0.12659	25.716	25.652	25.779	0					4	2	2	0	0	0	0.024768	1	1247	1247		31.53	0	1	28612			76505	9960	53366	53454	84225	84225					-0.08595953701444614
SSAPKEGGH	9	Unmodified	_SSAPKEGGH_					0	0	0			REV__ENST00000466404.5_1_19:54631532-54634860:+|nuORF	REV__ENST00000466404.5_1_19:54631532-54634860:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2107849121094	2	435.209224	868.403895	1.0696	0.00046548	0.54537	0.00023735	1.6149	0.00070283	435.2088547080744	99.031	1.6894	98.906	98.028	99.717	-0.12459					80	42	3	0	0	0	0.90698	1	12288	12288		31.955	2.8053	1	206790	+		76506	33037	53367	53455	84226	84226					-0.035571222101793865
SSAPRHPAW	9	Unmodified	_SSAPRHPAW_					0	0	0			REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	REV__GAS2L1|p.Q473Rfs*66|1|0.29|ENSG00000185340|chr22:29311863-29311863|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.76470947265625	2	504.754133	1007.49371	-0.45684	-0.00023059	-1.7432	-0.00087988	-2.2	-0.0011105	504.75333687993435	35.659	0.50576	35.443	35.1	35.606	-0.21555					21	12	2	0	0	0	0.024535	1	2672	2672		18.324	0	1	228740	+		76507	36063	53368	53456	84227	84227					-0.009734478109635347
SSAQEQDDLS	10	Unmodified	_SSAQEQDDLS_					0	0	0			REV__ENSG00000102981|ENST00000458121|PARD6A	REV__ENSG00000102981|ENST00000458121|PARD6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2838745117188	2	540.228007	1078.44146	-0.71094	-0.00038407	-4.4309	-0.0023937	-5.1419	-0.0027778	540.2254725090379	41.984	0.39137	41.752	41.546	41.937	-0.23186					14	10	2	0	0	0	0.03519	1	3725	3725		19.104	0	1	97786	+		76508	21344	53369	53457	84228	84228					-0.09462120525904538
SSARELLL	8	Unmodified	_SSARELLL_					0	0	0		ENST00000340309.7_1_20:48732395-48732473:-|nuORF	ENST00000340309.7_1_20:48732395-48732473:-|nuORF	ENST00000340309.7_1_20:48732395-48732473:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2244873046875	2	444.761092	887.507631	0.074891	3.3309E-05	0.024841	1.1048E-05	0.099732	4.4357E-05	444.761083881356	29.95	0.63492	29.8	29.584	30.219	-0.14952					31	14	3	0	0	0	0.027866	1	1882	1882		21.96	4.5949	1	239870			76509	12469	53370	53458	84229	84229					0.05937784897491838
SSARSWAP	8	Unmodified	_SSARSWAP_					0	0	0			REV__ENST00000390547.3_3_14:106174884-106174947:-|nuORF	REV__ENST00000390547.3_3_14:106174884-106174947:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.23138427734375	2	431.214309	860.414065	-0.39112	-0.00016866	1.9265	0.00083073	1.5354	0.00066207	431.2149346250676	26.247	0.40391	26.224	26.042	26.446	-0.023088					16	9	2	0	0	0	0.027866	1	1283	1283		47.916	0	1	79655	+		76510	31577	53371	53459	84230	84230					-0.0217251448495972
SSASIPSLPE	10	Unmodified	_SSASIPSLPE_					0	0	0			REV__nc|ENSG00000134686|Q8IXK0-4|PHC2	REV__nc|ENSG00000134686|Q8IXK0-4|PHC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.288330078125	2	494.253297	986.492041	0.25972	0.00012837	0.29755	0.00014707	0.55727	0.00027543	494.25336585955915	58.424	0.48531	58.515	58.26	58.745	0.091217					18	12	2	0	0	0	0.03519	1	6526	6526		66.429	15.094	1	223070	+		76511	23471	53372	53460	84231	84231					-0.0017454641022141004
SSASLSLGRL	10	Unmodified	_SSASLSLGRL_					0	0	0			REV__ENST00000561755.1_3_16:31120042-31120424:+|nuORF	REV__ENST00000561755.1_3_16:31120042-31120424:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2978820800781	2	495.782556	989.550559	-0.093485	-4.6348E-05	4.3102	0.0021369	4.2167	0.0020906	495.7852028721824	54.765	0.55771	54.614	54.507	55.065	-0.15036					16	15	2	0	0	0	0.03519	1	6022	6022		65.465	8.7443	1	195320	+		76512	35180	53373	53461	84232	84232					0.055365549549037496
SSASSCCCC	9	Unmodified	_SSASSCCCC_					0	0	0		nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77484130859375	2	425.613541	849.21253	-0.28025	-0.00011928	-3.5303	-0.0015026	-3.8106	-0.0016218	425.61383262186746	42.147	0.16159	42.015	41.953	42.115	-0.13219					6	4	2	0	0	0	0.024541	1	3823	3823		19.36	14.678	1	31003			76513	5121	53374	53462	84233	84233					-0.21810773891149893
SSATDAAIRVW	11	Unmodified	_SSATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	588.8045043945312	2	588.80402	1175.59349	-0.76914	-0.00045287	0.98638	0.00058079	0.21724	0.00012791	588.804548564505	58.942	0.95857	58.754	58.431	59.389	-0.18795					69	23	4	0	0	0	0.0030965	3	6512	6487;6499;6512		148.69	70.426	1	5560300			76514	9269	53375	53463	84234;84235;84236	84236					0.012713250123169928
SSATDAAIRVW	11	Unmodified	_SSATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	588.803955078125	2	588.80402	1175.59349	-0.53381	-0.00031431	0.62757	0.00036952	0.093764	5.5209E-05	588.8042992490248	58.869	0.84893	58.687	58.386	59.235	-0.18134					60	20	4	0	0	0	0.064447	3	6482	6482;6492;6503		117.53	60.894	1	5434900			76515	9269	53375	53463	84237;84238;84239	84237					0.012713250123169928
SSATDAAIRVW	11	Unmodified	_SSATDAAIRVW_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	588.8045043945312	2	588.80402	1175.59349	-0.015942	-9.3867E-06	0.019752	1.163E-05	0.0038096	2.2431E-06	588.8039625499925	58.981	0.96285	58.74	58.461	59.424	-0.24165					66	23	4	0	0	0	0.0001646	3	6494	6481;6494;6507		166.07	91.906	1	5813400			76516	9269	53375	53463	84240;84241;84242	84241					0.012713250123169928
SSATLLTMPV	10	Unmodified	_SSATLLTMPV_					0	0	0		ENST00000443892.2_1_1:2481410-2485587:-|nuORF	ENST00000443892.2_1_1:2481410-2485587:-|nuORF	ENST00000443892.2_1_1:2481410-2485587:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2789611816406	2	510.275718	1018.53688	-0.17502	-8.931E-05	-3.6854	-0.0018805	-3.8604	-0.0019699	510.2738209542123	90.553	2.0357	90.537	90.077	92.112	-0.016716					109	48	4	0	0	0	0.50466	1	11497	11497		87.754	2.5935	1	30368000			76517	14407	53376	53464	84243	84243					0.028355611314509588
SSATTYFWYR	10	Unmodified	_SSATTYFWYR_					0	0	0		ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.216552734375	3	427.868139	1280.58259	-0.19152	-8.1944E-05	-0.16395	-7.0149E-05	-0.35547	-0.00015209	427.86766271119393	29.822	0.6746	29.577	29.316	29.991	-0.24446					28	15	3	0	0	0	0.03519	1	1874	1874		20.837	0	1	228990			76518	9953	53377	53465	84244	84244					-0.046480773619805404
SSAVITCDLPV	11	Unmodified	_SSAVITCDLPV_					0	0	0		nc|ENSG00000211696|A0A0C4DH27|TRGV8	nc|ENSG00000211696|A0A0C4DH27|TRGV8	nc|ENSG00000211696|A0A0C4DH27|TRGV8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.78564453125	2	552.783907	1103.55326	-0.16692	-9.2269E-05	0.75076	0.00041501	0.58384	0.00032274	552.7840605061945	98.686	0.74529	98.518	98.285	99.03	-0.16778					35	16	3	0	0	0	0.72712	1	12217	12217		62.107	5.3864	1	165760			76519	18689	53378	53466	84245	84245					0.005626422975410605
SSAVIVKF	8	Unmodified	_SSAVIVKF_					0	0	0		ENST00000560622.5_1_15:63883463-63892825:-|nuORF;ENST00000561191.1_1_15:63883463-63891434:-|nuORF	ENST00000560622.5_1_15:63883463-63892825:-|nuORF	ENST00000560622.5_1_15:63883463-63892825:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.24627685546875	2	425.755278	849.496004	0.70551	0.00030037	1.5449	0.00065775	2.2504	0.00095812	425.7550019090155	87.47	0.67268	87.334	87.009	87.682	-0.13614					28	15	3	0	0	0	0.027866	1	10607	10607		17.365	5.8539	1	67667			76520	16807	53379	53467	84246	84246					0.06523587874141867
SSAVIVKF	8	Unmodified	_SSAVIVKF_					0	0	0		ENST00000560622.5_1_15:63883463-63892825:-|nuORF;ENST00000561191.1_1_15:63883463-63891434:-|nuORF	ENST00000560622.5_1_15:63883463-63892825:-|nuORF	ENST00000560622.5_1_15:63883463-63892825:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.755278	849.496004	-0.086688	-3.6908E-05	0.77123	0.00032836	0.68454	0.00029145	425.7555735442645	87.437	0.37924	87.437	87.194	87.573	0	0.073145	-0.00014295	NaN	11.511	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84508			76521	16807	53379	53467							0.06523587874141867
SSAVLLQW	8	Unmodified	_SSAVLLQW_					0	0	0		ENSG00000136950|ENST00000353214|ARPC5L	ENSG00000136950|ENST00000353214|ARPC5L	ENSG00000136950|ENST00000353214|ARPC5L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.24932861328125	2	452.25036	902.486168	-0.33667	-0.00015226	0.53873	0.00024364	0.20206	9.1383E-05	452.2503860889166	76.951	1.1987	76.782	75.853	77.052	-0.16853					48	28	4	0	0	0	0.59392	1	9161	9161		76.847	10.417	1	1271700			76522	5076	53380	53468	84247	84247					0.031023998687601306
SSAVPLTSVL	10	Unmodified	_SSAVPLTSVL_					0	0	0			REV__ENSG00000169876|ENST00000306151|MUC17	REV__ENSG00000169876|ENST00000306151|MUC17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.79022216796875	2	487.281857	972.549162	-0.038482	-1.8752E-05	1.3423	0.00065407	1.3038	0.00063532	487.28181816635555	80.808	2.6815	80.57	80.082	82.764	-0.23784					108	63	3	0	0	0	0.82838	1	9773	9773		58.782	0.55203	1	6614800	+		76523	26408	53381	53469	84248	84248					0.061789208661252815
SSAVSVATPTV	11	Unmodified	_SSAVSVATPTV_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145826912-145859658:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.8037414550781	2	509.774396	1017.53424	0.0564	2.8751E-05	4.059	0.0020692	4.1154	0.0020979	509.77620679968754	82.632	0.90669	82.451	82.201	83.107	-0.18079					30	20	2	0	0	0	0.024727	1	10050	10050		12.812	0	1	320460			76524	3316	53382	53470	84249	84249					0.02617428998144078
SSCSRRSFRWR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSCSRRSFRWR_					1	0	0			REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF	REV__ENST00000555540.1_1_14:35981656-35982271:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.57958984375	3	490.577476	1468.7106	0.87838	0.00043091	3.0708	0.0015064	3.9491	0.0019374	490.57906155486745	19.478	1.1293	19.278	18.859	19.988	-0.2001					78	22	6	0	0	0	0.93575	1	429	429		49.466	6.0473	1	1767300	+		76525	35010	53383	53471	84250	84250					-0.005008403197052758
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.7090454101562	2	515.709254	1029.40395	-0.53544	-0.00027613	-0.19114	-9.8573E-05	-0.72658	-0.00037471	515.7091435912255	30.228	1.2596	29.983	29.612	30.872	-0.24415					94	29	5	0	0	0	0.034181	5	1900	1891;1900;1912;1924;1938		138.24	66.947	1	9596700			76526	2158	53384	53472	84251;84252;84253;84254;84255	84252					-0.10957167000856316
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.708984375	2	515.709254	1029.40395	-0.77642	-0.00040041	0.1347	6.9469E-05	-0.64172	-0.00033094	515.7093182504212	30.023	1.388	29.845	29.484	30.872	-0.17817					99	32	5	0	0	0	0.028181	4	1881	1869;1881;1893;1905		143.02	71.724	1	9839000			76527	2158	53384	53472	84256;84257;84258;84259	84257					-0.10957167000856316
SSDAHTSYY	9	Unmodified	_SSDAHTSYY_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.7091674804688	2	515.709254	1029.40395	-0.096932	-4.9989E-05	-0.45468	-0.00023448	-0.55161	-0.00028447	515.7089922876629	29.826	1.472	29.677	29.296	30.768	-0.14952					95	34	5	0	0	0	0.096521	6	1828	1817;1828;1840;1851;1863;1878		111.65	52.866	1	6924700			76528	2158	53384	53472	84260;84261;84262;84263;84264;84265	84261					-0.10957167000856316
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.2288208007812	2	522.230019	1042.44548	-0.90907	-0.00047475	0.72208	0.00037709	-0.187	-9.7656E-05	522.230369993837	35.872	1.6805	35.666	35.346	37.027	-0.20518					143	44	5	0	0	0	0.0089529	8	2759	2734;2746;2759;2772;2784;2796;2809;2821		239.13	119.91	1	49086000			76529	3355	53385	53473	84266;84267;84268;84269;84270;84271;84272;84273	84268					-0.07404031032183411
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.2294921875	2	522.230019	1042.44548	0.031531	1.6467E-05	-0.34367	-0.00017947	-0.31213	-0.00016301	522.2298291629344	35.813	1.8876	35.6	35.233	37.121	-0.21246					150	49	5	0	0	0	0.013946	5	2733	2721;2733;2746;2759;2771		223.88	108.96	1	47843000			76530	3355	53385	53473	84274;84275;84276;84277;84278	84275					-0.07404031032183411
SSDDSKLEY	9	Unmodified	_SSDDSKLEY_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.2293090820312	2	522.230019	1042.44548	-0.014229	-7.431E-06	-0.10023	-5.2341E-05	-0.11446	-5.9772E-05	522.2299892311928	35.656	1.806	35.47	35.061	36.867	-0.18675					152	47	6	0	0	0	0.0089529	5	2733	2686;2697;2709;2721;2733		261.4	154.98	1	55255000			76531	3355	53385	53473	84279;84280;84281;84282;84283	84283					-0.07404031032183411
SSDLKTSVE	9	Unmodified	_SSDLKTSVE_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.8005065917969	2	483.242929	964.471305	0.40662	0.00019649	0.53595	0.00025899	0.94257	0.00045549	483.24305667139737	20.316	0.73473	20.092	19.73	20.464	-0.22344					19	14	2	0	0	0	0.024405	1	472	472		35.618	10.168	1	22543			76532	9743	53386	53474	84284	84284					-0.012351367898872923
SSDLKTSVE	9	Unmodified	_SSDLKTSVE_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.8005065917969	2	483.242929	964.471305	1.4201	0.00068624	-0.3785	-0.00018291	1.0416	0.00050333	483.2425926007553	19.682	0.78947	19.448	19.126	19.916	-0.23345					22	15	2	0	0	0	0.024405	1	472	472		35.618	3.6634	1	29097			76533	9743	53386	53474	84285	84285					-0.012351367898872923
SSDLKTSVE	9	Unmodified	_SSDLKTSVE_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	483.242929	964.471305	0.8592	0.0004152	3.787	0.0018301	4.6462	0.0022453	483.24473137375486	19.417	0.29277	19.417	19.218	19.511	0	-0.028178	0.0010053	NaN	27.882	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26891			76534	9743	53386	53474							-0.012351367898872923
SSDLKTSVE	9	Unmodified	_SSDLKTSVE_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant;FSIP2|p.S5399Ffs*16|1|0.24|ENSG00000188738|chr2:185805495-185805496|-/T|frameshift_variant;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.242929	964.471305	-0.17519	-8.4659E-05	4.826	0.0023321	4.6508	0.0022475	483.24507627554283	19.589	0.29285	19.47	19.299	19.591	-0.11872	0.02503	0.0020094	NaN	27.882	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25058			76535	9743	53386	53474							-0.012351367898872923
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7488403320312	2	554.74891	1107.48327	-0.37298	-0.00020691	0.10055	5.5782E-05	-0.27243	-0.00015113	554.7489724703476	36.414	1.0534	36.209	35.786	36.839	-0.20518					85	27	5	0	0	0	4.7777E-06	3	2855	2834;2844;2855		233.57	140.42	1	6075800			76536	2874	53387	53475	84286;84287;84288	84288					-0.06617520046711434
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.748779296875	2	554.74891	1107.48327	0.18213	0.00010104	-0.29727	-0.00016491	-0.11514	-6.3875E-05	554.7486002111091	36.403	0.86209	36.186	35.947	36.809	-0.21661					42	21	2	0	0	0	0.0001986	1	2838	2838		195.57	86.134	1	6389700			76537	2874	53387	53475	84289	84289					-0.06617520046711434
SSDNATLTHY	10	Unmodified	_SSDNATLTHY_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.7490234375	2	554.74891	1107.48327	1.173	0.00065074	-1.3407	-0.00074377	-0.1677	-9.3033E-05	554.7480297326907	36.286	0.93347	36.088	35.843	36.776	-0.19829					40	23	2	0	0	0	0.076563	2	2818	2809;2818		141.52	57.873	1	6158700			76538	2874	53387	53475	84290;84291	84291					-0.06617520046711434
SSDNIMVQY	9	Unmodified	_SSDNIMVQY_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7364501953125	2	528.736957	1055.45936	-0.49908	-0.00026388	0.67056	0.00035455	0.17148	9.0669E-05	528.7370707123182	60.521	0.64497	60.315	60.05	60.695	-0.20599					35	15	3	0	0	0	0.39228	1	6740	6740		66.429	6.311	1	1717700			76539	6690;9070	53388	53476	84292	84292					-0.06615076804723685
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.7388305664062	2	527.738011	1053.46147	-0.023434	-1.2367E-05	-0.18139	-9.5727E-05	-0.20482	-0.00010809	527.7378919739539	52.993	1.4265	52.866	52.273	53.7	-0.12705					109	37	5	0	0	0	4.8662E-06	7	5524	5492;5501;5513;5524;5536;5548;5564		254.98	116.15	1	13916000			76540	3093	53389	53477	84293;84294;84295;84296;84297;84298;84299	84296					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.7381591796875	2	527.738011	1053.46147	0.13972	7.3736E-05	-0.62329	-0.00032893	-0.48357	-0.0002552	527.7376683515721	53.206	1.2309	52.947	52.443	53.674	-0.25838					106	32	5	0	0	0	4.3571E-06	6	5541	5518;5529;5541;5553;5565;5577		254.98	141.57	1	15946000			76541	3093	53389	53477	84300;84301;84302;84303;84304;84305	84302					-0.06312324795271707
SSDPASQLSY	10	Unmodified	_SSDPASQLSY_					0	0	0		FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|508|22.11|0.58|5.26|-|ENST00000342628|FOXM1,FOXM1	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	FOXM1|p.E671Nfs*12|1|0.12|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.7379760742188	2	527.738011	1053.46147	0.041393	2.1845E-05	-0.54994	-0.00029023	-0.50855	-0.00026838	527.7377028177099	53.051	1.3175	52.862	52.43	53.747	-0.18982					97	35	5	0	0	0	4.3571E-06	6	5517	5505;5517;5529;5541;5553;5568		239.13	113.31	1	17186000			76542	3093	53389	53477	84306;84307;84308;84309;84310;84311	84307					-0.06312324795271707
SSDPNAVMY	9	Oxidation (M)	_SSDPNAVM(Oxidation (M))Y_		SSDPNAVM(1)Y		SSDPNAVM(140)Y	0	0	1		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.20831298828125	2	500.208032	998.401511	-0.098704	-4.9372E-05	-0.16699	-8.3529E-05	-0.26569	-0.0001329	500.2079278204431	41.834	0.99577	41.711	41.385	42.38	-0.12299					86	26	4	0	0	0	0.028071	3	3718	3706;3718;3730		143.11	68.852	1	17270000			76543	5145	53390	53478	84312;84313;84314	84313		211			-0.09775338730162275
SSDPNAVMY	9	Oxidation (M)	_SSDPNAVM(Oxidation (M))Y_		SSDPNAVM(1)Y		SSDPNAVM(100)Y	0	0	1		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.20721435546875	2	500.208032	998.401511	-0.436	-0.00021809	0.028042	1.4027E-05	-0.40795	-0.00020406	500.2079506695023	43.599	4.2786	43.488	42.246	46.524	-0.11145					274	116	3	0	0	0	0.12602	3	4018	3995;4006;4018		104.75	26.803	1	7873800			76544	5145	53390	53478	84315;84316;84317	84317		211			-0.09775338730162275
SSDPNAVMY	9	Oxidation (M)	_SSDPNAVM(Oxidation (M))Y_		SSDPNAVM(1)Y		SSDPNAVM(160)Y	0	0	1		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.2077331542969	2	500.208032	998.401511	-0.47202	-0.00023611	0.12784	6.3946E-05	-0.34419	-0.00017216	500.20805786375143	42.014	0.84354	41.783	41.43	42.273	-0.23186					79	22	5	0	0	0	0.015925	3	3735	3724;3735;3747		157.21	80.362	1	17902000			76545	5145	53390	53478	84318;84319;84320	84319		211			-0.09775338730162275
SSDPNAVMY	9	Oxidation (M)	_SSDPNAVM(Oxidation (M))Y_		SSDPNAVM(1)Y		SSDPNAVM(110)Y	0	0	1		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.2078552246094	2	500.208032	998.401511	-0.80537	-0.00040285	0.29402	0.00014707	-0.51135	-0.00025578	500.2080610174261	43.782	3.9178	43.537	42.222	46.139	-0.24432					297	105	4	0	0	0	0.11092	5	4012	4012;4024;4036;4047;4129		108.09	47.116	1	8211000			76546	5145	53390	53478	84321;84322;84323;84324;84325	84321		211			-0.09775338730162275
SSDPNAVMY	9	Oxidation (M)	_SSDPNAVM(Oxidation (M))Y_		SSDPNAVM(1)Y		SSDPNAVM(160)Y	0	0	1		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.20751953125	2	500.208032	998.401511	-0.44125	-0.00022072	-0.1117	-5.5871E-05	-0.55294	-0.00027659	500.2079617673512	41.963	1.0523	41.732	41.354	42.406	-0.2303					95	28	4	0	0	0	0.015925	3	3718	3718;3729;3741		157.21	88.422	1	21828000			76547	5145	53390	53478	84326;84327;84328	84326		211			-0.09775338730162275
SSDPNAVMY	9	Oxidation (M)	_SSDPNAVM(Oxidation (M))Y_		SSDPNAVM(1)Y		SSDPNAVM(120)Y	0	0	1		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.20697021484375	2	500.208032	998.401511	-1.2057	-0.00060311	0.66417	0.00033222	-0.54155	-0.00027089	500.20824753099777	43.734	4.0529	43.515	42.266	46.319	-0.21939					293	110	4	0	0	0	0.072054	7	4017	3955;3982;4005;4017;4029;4042;4053		120.62	54.818	1	9875900			76548	5145	53390	53478	84329;84330;84331;84332;84333;84334;84335	84332		211			-0.09775338730162275
SSDPNAVMY	9	Unmodified	_SSDPNAVMY_					0	0	0		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.2101745605469	2	492.210575	982.406597	-0.55181	-0.00027161	0.69237	0.00034079	0.14056	6.9186E-05	492.2108309726467	49.442	0.98525	49.341	48.992	49.977	-0.1008					59	25	4	0	0	0	0.50848	1	4966	4966		58.782	12.83	1	3350900			76549	5145	53390	53479	84336	84336					-0.08531034867553444
SSDPNAVMY	9	Unmodified	_SSDPNAVMY_					0	0	0		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.2107238769531	2	492.210575	982.406597	0.094728	4.6626E-05	0.09287	4.5712E-05	0.1876	9.2338E-05	492.2104926636556	49.695	0.98178	49.415	49.049	50.031	-0.27977					59	25	4	0	0	0	0.62163	2	5009	4997;5009		51.335	8.861	1	4618300			76550	5145	53390	53479	84337;84338	84338					-0.08531034867553444
SSDPNAVMY	9	Unmodified	_SSDPNAVMY_					0	0	0		ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	ENSG00000137673|ENST00000260227|MMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.210205078125	2	492.210575	982.406597	0.31433	0.00015472	-0.23119	-0.0001138	0.083139	4.0922E-05	492.21036822680526	49.513	1.17	49.332	49.002	50.172	-0.18071					75	30	4	0	0	0	0.39228	3	4977	4965;4977;4990		66.429	13.056	1	6451300			76551	5145	53390	53479	84339;84340;84341	84340					-0.08531034867553444
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7037048339844	2	506.703971	1011.39339	-0.064023	-3.2441E-05	-0.24084	-0.00012204	-0.30486	-0.00015448	506.70379733072735	32.595	1.4079	32.358	31.74	33.148	-0.23667					84	33	5	0	0	0	0.012965	5	2240	2240;2249;2260;2273;2288		187.63	91.443	1	6165000			76552	1834	53391	53480	84342;84343;84344;84345;84346	84342					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.7037353515625	2	506.703971	1011.39339	0.22479	0.0001139	-0.51619	-0.00026156	-0.2914	-0.00014765	506.7036483646927	32.67	1.0673	32.477	32.073	33.14	-0.19261					75	25	4	0	0	0	0.012965	5	2243	2243;2255;2266;2278;2293		187.63	94.438	1	5693300			76553	1834	53391	53480	84347;84348;84349;84350;84351	84347					-0.11185149655273108
SSDPYHSGY	9	Unmodified	_SSDPYHSGY_					0	0	0		SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.70391845703125	2	506.703971	1011.39339	-0.46621	-0.00023623	0.061189	3.1005E-05	-0.40502	-0.00020523	506.70397010689516	32.394	1.0614	32.236	31.904	32.966	-0.15772					76	25	5	0	0	0	0.012965	4	2205	2196;2205;2218;2232		204.1	110.9	1	6794600			76554	1834	53391	53480	84352;84353;84354;84355	84353					-0.11185149655273108
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MSMS	OPSCC_40_ClassI_Rep-1	4	553.7645874023438	2	553.764894	1105.51524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.128	1	25.892	25.392	26.392	-0.23603								0	0	0	0.16394	1	1310	1310		78.264	25.327	1				76555	6366	53392	53481	84356	84356					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.7646484375	2	553.764894	1105.51524	-1.2525	-0.00069357	0.96414	0.0005339	-0.28832	-0.00015966	553.7652800812834	25.943	0.31989	25.779	25.631	25.951	-0.16331					14	8	2	0	0	0	0.28047	1	1249	1249		78.264	10.77	1	1572700			76556	6366	53392	53481	84357	84357					-0.033301075729013974
SSDRHLTQY	9	Unmodified	_SSDRHLTQY_					0	0	0		ENSG00000153922|ENST00000614616|CHD1;nc|ENSG00000153922|O14646-2|CHD1	ENSG00000153922|ENST00000614616|CHD1	ENSG00000153922|ENST00000614616|CHD1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	553.764894	1105.51524	-0.25442	-0.00014089	0.036088	1.9984E-05	-0.21834	-0.00012091	553.7650002490053	25.962	1.0037	25.791	25.413	26.417	-0.17078	0.0057007	-0.00062282	NaN	78.264	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1658800			76557	6366	53392	53481							-0.033301075729013974
SSDVGHDEY	9	Unmodified	_SSDVGHDEY_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.6988830566406	2	504.698886	1007.38322	-0.64304	-0.00032454	0.3549	0.00017912	-0.28814	-0.00014543	504.6989830605051	26.777	0.8146	26.541	26.268	27.082	-0.23603					51	19	4	0	0	0	0.015527	3	1416	1416;1426;1439		193.98	110.69	1	2913700			76558	3431	53393	53482	84358;84359;84360	84358					-0.12017757380522198
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.7459716796875	2	531.74617	1061.47779	-0.24675	-0.00013121	-0.091817	-4.8823E-05	-0.33857	-0.00018003	531.7460188115733	32.556	0.82788	32.319	32.042	32.87	-0.23667					79	19	6	0	0	0	0.047345	4	2248	2238;2248;2261;2275		129.68	60.896	1	5405100			76559	8984	53394	53483	84361;84362;84363;84364	84362					-0.050491988385147124
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.7462768554688	2	531.74617	1061.47779	-0.079601	-4.2327E-05	-0.28648	-0.00015233	-0.36608	-0.00019466	531.745956269011	32.629	0.95076	32.436	32.073	33.024	-0.19261					83	22	5	0	0	0	0.033448	4	2267	2242;2254;2267;2280		138.83	70.039	1	5123700			76560	8984	53394	53483	84365;84366;84367;84368	84367					-0.050491988385147124
SSEAHLQQY	9	Unmodified	_SSEAHLQQY_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.E589Kfs*3|1|0.59|ENSG00000180530|chr21:14966429-14966429|A/-|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.74658203125	2	531.74617	1061.47779	-0.43624	-0.00023197	0.15387	8.1822E-05	-0.28237	-0.00015015	531.7461590019731	32.46	1.0547	32.302	31.991	33.046	-0.15772					83	25	6	0	0	0	0.03849	3	2230	2209;2219;2230		134.81	70.603	1	6077800			76561	8984	53394	53483	84369;84370;84371	84371					-0.050491988385147124
SSEEGRRP	8	Unmodified	_SSEEGRRP_					0	0	0			REV__ENSG00000010671|ENST00000308731|BTK	REV__ENSG00000010671|ENST00000308731|BTK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.22509765625	2	459.225405	916.436257	-0.30652	-0.00014076	-0.2607	-0.00011972	-0.56723	-0.00026049	459.225414960314	26.111	2.5464	25.943	25.502	28.048	-0.16816					199	64	5	0	0	0	0.94517	2	1299	1299;1323		45.952	3.0877	1	47552000	+		76562	19910	53395	53484	84372;84373	84372					-0.025303348071929577
SSEELPLYY	9	Unmodified	_SSEELPLYY_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.7595825195312	2	550.760955	1099.50736	-0.051209	-2.8204E-05	0.27179	0.00014969	0.22058	0.00012149	550.7609388100849	74.358	0.811	74.083	73.867	74.678	-0.27573					34	19	4	0	0	0	0.36105	1	8746	8746		68.485	8.1907	1	772060			76563	7136	53396	53485	84374	84374					-0.038416796130377406
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.7632446289062	2	530.763497	1059.51244	0.29688	0.00015758	-0.89526	-0.00047517	-0.59837	-0.00031759	530.762986060121	82.112	1.3797	81.883	81.479	82.859	-0.2289					105	31	6	0	0	0	0.013492	6	9871	9850;9859;9871;9883;9896;9910		204.1	116.4	1	11609000			76564	15587	53397	53486	84375;84376;84377;84378;84379;84380	84377					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.7633666992188	2	530.763497	1059.51244	-0.30685	-0.00016286	-0.22294	-0.00011833	-0.52979	-0.00028119	530.7633441270181	82.058	2.3489	81.865	81.505	83.853	-0.19334					119	54	5	0	0	0	0.01471	6	9880	9859;9868;9880;9891;9903;9916		204.1	132.72	1	13732000			76565	15587	53397	53486	84381;84382;84383;84384;84385;84386	84383					-0.014933757504195455
SSELFTLTY	9	Unmodified	_SSELFTLTY_					0	0	0		ENST00000497251.1_1_1:36605278-36614725:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.7634887695312	2	530.763497	1059.51244	-0.83165	-0.00044141	0.26166	0.00013888	-0.56999	-0.00030253	530.7636005172259	82.032	1.8103	81.892	81.528	83.339	-0.14014					131	41	6	0	0	0	0.013492	6	9870	9837;9847;9858;9870;9882;9896		187.63	110.32	1	15172000			76566	15587	53397	53486	84387;84388;84389;84390;84391;84392	84390					-0.014933757504195455
SSFCEMTL	8	Unmodified	_SSFCEMTL_					0	0	0		ENST00000471821.1_1_X:154019969-154033702:-|nuORF;ENST00000475943.5_1_X:154013074-154033702:-|nuORF	ENST00000471821.1_1_X:154019969-154033702:-|nuORF	ENST00000471821.1_1_X:154019969-154033702:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.22509765625	2	459.190796	916.36704	-0.76165	-0.00034974	-4.4612	-0.0020486	-5.2229	-0.0023983	459.18894491641043	26.426	0.14527	26.262	26.199	26.344	-0.16331					5	3	2	0	0	0	0.027866	1	1348	1348		31.955	0	1	57157			76567	14971	53398	53487	84393	84393					-0.09448878142598005
SSFCLKIRSSH	11	Unmodified	_SSFCLKIRSSH_					0	0	0		ENST00000562919.1_1_4:113152035-113152410:-|nuORF	ENST00000562919.1_1_4:113152035-113152410:-|nuORF	ENST00000562919.1_1_4:113152035-113152410:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7280578613281	3	422.220407	1263.63939	-0.84824	-0.00035814	-1.711	-0.00072241	-2.5592	-0.0010806	422.2200309861409	25.483	0.57434	25.483	25.248	25.823	0					16	13	2	0	0	0	0.024727	1	1193	1193		23.378	0	1	170960			76568	16856	53399	53488	84394	84394					0.018116469228971255
SSFITALAGE	10	Unmodified	_SSFITALAGE_					0	0	0		ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	ENSG00000074582|ENST00000359273|BCS1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.2547302246094	2	498.25584	994.497126	-0.013314	-6.6336E-06	0.09221	4.5944E-05	0.078896	3.931E-05	498.25575198578434	72.125	0.74922	71.849	71.706	72.456	-0.27509					33	17	2	0	0	0	0.64538	1	8442	8442		71.877	0.58177	1	1105100			76569	1530	53400	53489	84395	84395					-0.0003424254762194323
SSFLETLK	8	Unmodified	_SSFLETLK_					0	0	0		nc|ENSG00000180881|Q9BXY5-2|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2	nc|ENSG00000180881|Q9BXY5-2|CAPS2	nc|ENSG00000180881|Q9BXY5-2|CAPS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7563171386719	2	462.755475	923.496398	0.5585	0.00025845	0.64643	0.00029914	1.2049	0.00055759	462.75574290148563	40.466	1.5802	40.354	39.792	41.372	-0.11222					124	43	5	0	0	0	0.81662	1	3535	3535		57.811	0	1	25791000			76570	9005	53401	53490	84396	84396					0.03158962803331633
SSFRNLRQ	8	Unmodified	_SSFRNLRQ_					0	0	0			REV__ENST00000471771.5_1_13:28011305-28011362:-|nuORF	REV__ENST00000471771.5_1_13:28011305-28011362:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.272705078125	2	504.27269	1006.53083	-0.12124	-6.1136E-05	-0.038605	-1.9468E-05	-0.15984	-8.0604E-05	504.2725947722618	20.365	0.68546	20.142	19.878	20.564	-0.22344					38	13	4	0	0	0	0.94517	1	514	514		45.952	3.5558	1	841620	+		76571	33183	53402	53491	84397	84397					0.027822237347891132
SSFSARSSW	9	Unmodified	_SSFSARSSW_					0	0	0			REV__nc|ENSG00000244486|Q96GP6|SCARF2	REV__nc|ENSG00000244486|Q96GP6|SCARF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7358093261719	2	507.735606	1013.45666	-0.40399	-0.00020512	0.39009	0.00019806	-0.013907	-7.0609E-06	507.73579833306013	39.928	0.83903	39.703	39.42	40.259	-0.22501					61	21	4	0	0	0	0.26966	2	3400	3388;3400		79.713	3.3428	1	5946300	+		76572	29000	53403	53492	84398;84399	84399					-0.0495316414737772
SSFSARSSW	9	Unmodified	_SSFSARSSW_					0	0	0			REV__nc|ENSG00000244486|Q96GP6|SCARF2	REV__nc|ENSG00000244486|Q96GP6|SCARF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7353210449219	2	507.735606	1013.45666	-0.46538	-0.00023629	0.55777	0.0002832	0.092391	4.691E-05	507.73586336683655	39.909	0.95659	39.678	39.352	40.308	-0.23021					65	24	4	0	0	0	0.42604	1	3426	3426		64.207	0.901	1	5986400	+		76573	29000	53403	53492	84400	84400					-0.0495316414737772
SSFTDQRLF	9	Unmodified	_SSFTDQRLF_					0	0	0		ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.7742309570312	2	550.772188	1099.52982	-0.22084	-0.00012163	0.22259	0.0001226	0.0017549	9.6654E-07	550.7721534617192	60.37	0.91129	60.173	59.947	60.858	-0.19742					65	22	4	0	0	0	0.12914	2	6710	6710;6721		104.06	37.628	1	2812500			76574	12181	53404	53493	84401;84402	84401					-0.015960354247681607
SSFTDQRLF	9	Unmodified	_SSFTDQRLF_					0	0	0		ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.7733154296875	2	550.772188	1099.52982	-0.44167	-0.00024326	0.18596	0.00010242	-0.25571	-0.00014084	550.7721493137377	60.232	0.89698	60.056	59.777	60.674	-0.1761					53	22	3	0	0	0	0.12914	2	6702	6692;6702		104.06	41.949	1	2638100			76575	12181	53404	53493	84403;84404	84404					-0.015960354247681607
SSFTDQRLF	9	Unmodified	_SSFTDQRLF_					0	0	0		ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	ENST00000319264.3_1_9:12775113-12775212:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.7738647460938	2	550.772188	1099.52982	-0.57043	-0.00031418	0.18341	0.00010102	-0.38702	-0.00021316	550.7721226585687	60.419	0.98761	60.166	59.904	60.891	-0.25373					62	24	4	0	0	0	0.041068	3	6703	6703;6714;6728		132.76	50.517	1	2811800			76576	12181	53404	53493	84405;84406;84407	84405					-0.015960354247681607
SSFYLVSSF	9	Unmodified	_SSFYLVSSF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|204|2|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|204|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7506713867188	2	518.752933	1035.49131	-1.3603	-0.00070568	-3.6758	-0.0019069	-5.0362	-0.0026125	518.7509666205777	26.962	1.1406	27.043	26.543	27.684	0.081291					63	29	4	0	0	0	0.40179	1	1370	1370		65.803	1.5959	1	3178300	+		76577	36288	53405	53494	84408	84408					-0.025013410592691798
SSGAFSTTK	9	Unmodified	_SSGAFSTTK_					0	0	0			REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF	REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.73504638671875	2	443.219257	884.423961	1.9286	0.00085479	0.13142	5.825E-05	2.06	0.00091304	443.2192152250564	23.305	0.67566	23.114	22.897	23.572	-0.19117					22	15	2	0	0	0	0.024313	1	934	934		21.686	0	1	493310	+		76578	27064	53406	53495	84409	84409					-0.02287371270233507
SSGDSIQPS	9	Unmodified	_SSGDSIQPS_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.N1625Kfs*5|1|0.18|ENSG00000188994|chr6:87258492-87258493|-/A|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.1993408203125	2	439.198522	876.38249	0.31728	0.00013935	0.85976	0.00037761	1.177	0.00051696	439.19878719789415	61.849	0.79614	61.592	61.301	62.097	-0.25725					40	19	3	0	0	0	0.42604	2	6915	6915;6927		64.207	10.866	1	1257800			76579	9775	53407	53496	84410;84411	84410					-0.06064552029567949
SSGKKRGLVP	10	Unmodified	_SSGKKRGLVP_					0	0	0		nc|ENSG00000141750|Q6ZMT1-2|STAC2;ENSG00000141750|ENST00000333461|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.298828125	2	514.81419	1027.61383	-0.42954	-0.00022113	-0.24499	-0.00012612	-0.67453	-0.00034726	514.8143369634192	95.497	1.1046	95.497	95.05	96.155	0					37	25	2	0	0	0	0.03519	1	12106	12106		39.253	10.103	1	186580			76580	5521	53408	53497	84412	84412					0.1011254046279646
SSGPDTRI	8	Unmodified	_SSGPDTRI_					0	0	0			REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	REV__CUBN|p.W3187*|1|0.2|ENSG00000107611|chr10:16851337-16851337|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.7117614746094	2	416.711599	831.408646	-0.74452	-0.00031025	0.92316	0.00038469	0.17864	7.4441E-05	416.7119329154328	25.85	0.61353	25.614	25.302	25.916	-0.23571					46	14	5	0	0	0	0.32162	1	1271	1271		108.09	1.08	1	2171400	+		76581	19632	53409	53498	84413	84413					-0.01380238067429218
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	429.73779296875	2	429.737617	857.460681	0.2131	9.1577E-05	-0.27908	-0.00011993	-0.065979	-2.8354E-05	429.7375199472762	39.79	1.263	39.79	39.288	40.551	0					112	35	5	0	0	0	0.18427	7	3451	3418;3428;3439;3451;3463;3475;3489		143.11	31.459	1	21624000			76582	7366	53410	53499	84414;84415;84416;84417;84418;84419;84420	84417					0.026249253463333844
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.7379455566406	2	429.737617	857.460681	-0.90284	-0.00038798	0.8845	0.00038011	-0.018332	-7.8781E-06	429.73801164842894	39.807	1.3371	39.695	39.221	40.558	-0.11222					111	36	5	0	0	0	0.25873	6	3434	3412;3422;3434;3446;3457;3470		129.68	28.261	1	18339000			76583	7366	53410	53499	84421;84422;84423;84424;84425;84426	84423					0.026249253463333844
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	429.7379455566406	2	429.737617	857.460681	-0.47718	-0.00020506	0.64539	0.00027735	0.16821	7.2284E-05	429.7378896309604	39.971	1.3092	39.994	39.455	40.764	0.023006					113	36	5	0	0	0	0.27613	7	3406	3386;3396;3406;3418;3430;3442;3455		122.18	27.879	1	17691000			76584	7366	53410	53499	84427;84428;84429;84430;84431;84432;84433	84429					0.026249253463333844
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	429.73797607421875	2	429.737617	857.460681	0.12127	5.2113E-05	0.55901	0.00024023	0.68028	0.00029234	429.7377911624132	39.873	1.0534	39.724	39.205	40.258	-0.1497					76	27	4	0	0	0	0.18427	5	3390	3380;3390;3400;3412;3424		143.11	31.459	1	6565500			76585	7366	53410	53499	84434;84435;84436;84437;84438	84435					0.026249253463333844
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	429.7383728027344	2	429.737617	857.460681	0.060128	2.5839E-05	0.79455	0.00034145	0.85468	0.00036729	429.73790057389664	39.974	1.0347	39.749	39.261	40.296	-0.225					75	26	4	0	0	0	0.27613	5	3401	3389;3401;3412;3423;3435		122.18	25.204	1	6181200			76586	7366	53410	53499	84439;84440;84441;84442;84443	84440					0.026249253463333844
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	429.7381591796875	2	429.737617	857.460681	-0.0065332	-2.8076E-06	1.0653	0.0004578	1.0588	0.00045499	429.7379804190739	39.971	1.1413	39.74	39.237	40.378	-0.2302					83	29	4	0	0	0	0.095325	4	3394	3383;3394;3406;3417		161.9	32.216	1	6325200			76587	7366	53410	53499	84444;84445;84446;84447	84445					0.026249253463333844
SSGPERSI	8	Unmodified	_SSGPERSI_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.22|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.7117919921875	2	416.711599	831.408646	-0.18491	-7.7055E-05	0.58892	0.00024541	0.40401	0.00016835	416.71175747114626	25.589	1.072	25.589	25.211	26.283	0					59	25	3	0	0	0	0.15467	4	1239	1214;1226;1239;1250		148.04	51.853	1	1879900			76588	8873	53411	53500	84448;84449;84450;84451	84450					-0.01380238067429218
SSGPERSI	8	Unmodified	_SSGPERSI_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.22|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.71185302734375	2	416.711599	831.408646	-0.45389	-0.00018914	0.97476	0.00040619	0.52087	0.00021705	416.7119537286732	25.614	0.9141	25.58	25.238	26.152	-0.034395					60	21	4	0	0	0	0.23402	3	1234	1210;1222;1234		134.81	44.034	1	1998900			76589	8873	53411	53500	84452;84453;84454	84454					-0.01380238067429218
SSGPERSI	8	Unmodified	_SSGPERSI_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.22|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.711669921875	2	416.711599	831.408646	-0.74452	-0.00031025	0.92316	0.00038469	0.17864	7.4441E-05	416.7119329154328	25.85	0.61353	25.614	25.302	25.916	-0.23571					46	14	5	0	0	0	0.4295	2	1262	1262;1285		93.143	21.266	1	2171400			76590	8873	53411	53500	84455;84456	84455					-0.01380238067429218
SSGPERSI	8	Unmodified	_SSGPERSI_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.22|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.7115783691406	2	416.711599	831.408646	-0.22791	-9.4974E-05	0.53926	0.00022471	0.31134	0.00012974	416.71170542720796	25.595	0.61707	25.424	25.081	25.698	-0.17078					40	14	4	0	0	0	0.23402	3	1218	1218;1227;1243		134.81	33.254	1	2019800			76591	8873	53411	53500	84457;84458;84459	84457					-0.01380238067429218
SSGPERSI	8	Unmodified	_SSGPERSI_					0	0	0		SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;SPTY2D1|p.P485Rfs*12|1|0.22|ENSG00000179119|chr11:18614820-18614820|G/-|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	SPTY2D1|p.N508Kfs*18|1|0.33|ENSG00000179119|chr11:18614750-18614751|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	416.711599	831.408646	-0.17865	-7.4445E-05	-0.082878	-3.4536E-05	-0.26153	-0.00010898	416.711580921163	25.642	0.46641	25.47	25.241	25.708	-0.17151	-0.065237	-0.00067031	NaN	148.04	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49774			76592	8873	53411	53500							-0.01380238067429218
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.23779296875	2	422.237784	842.461016	-0.73864	-0.00031188	0.67146	0.00028352	-0.06718	-2.8366E-05	422.23807360392703	32.836	1.3305	32.836	32.224	33.554	0					111	35	4	0	0	0	0.25873	6	2291	2282;2291;2303;2315;2328;2341		129.68	44.655	1	11032000			76593	10817	53412	53501	84460;84461;84462;84463;84464;84465	84461					0.033483450661947245
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.2376708984375	2	422.237784	842.461016	-0.60801	-0.00025672	0.49154	0.00020755	-0.11647	-4.9179E-05	422.2380068528199	32.688	1.3244	32.699	32.104	33.428	0.011799					104	35	5	0	0	0	0.12879	6	2288	2242;2254;2265;2276;2288;2302		152.63	40.77	1	10883000			76594	10817	53412	53501	84466;84467;84468;84469;84470;84471	84470					0.033483450661947245
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.2375793457031	2	422.237784	842.461016	0.11264	4.7562E-05	-0.15111	-6.3803E-05	-0.038464	-1.6241E-05	422.2377322893619	32.485	1.4358	32.548	31.921	33.356	0.062885					111	37	5	0	0	0	0.12879	7	2184	2174;2184;2195;2206;2218;2230;2242		152.63	39.235	1	10181000			76595	10817	53412	53501	84472;84473;84474;84475;84476;84477;84478	84473					0.033483450661947245
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.23809814453125	2	422.237784	842.461016	-0.037653	-1.5898E-05	0.09259	3.9095E-05	0.054938	2.3197E-05	422.23774270163403	32.856	1.0275	32.625	32.048	33.075	-0.23107					65	24	5	0	0	0	0.30053	3	2297	2286;2297;2310		111.65	26.289	1	1857600			76596	10817	53412	53501	84479;84480;84481	84480					0.033483450661947245
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.2381896972656	2	422.237784	842.461016	0.35036	0.00014793	-0.24678	-0.0001042	0.10358	4.3735E-05	422.2375626934394	32.871	0.95076	32.678	32.073	33.024	-0.19261					57	22	3	0	0	0	0.38451	2	2292	2292;2303		99.375	21.431	1	1827400			76597	10817	53412	53501	84482;84483	84482					0.033483450661947245
SSGPQRLV	8	Unmodified	_SSGPQRLV_					0	0	0		ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF	ENSG00000244045|ENST00000292114|TMEM199	ENSG00000244045|ENST00000292114|TMEM199	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.2378234863281	2	422.237784	842.461016	-0.042535	-1.796E-05	0.13039	5.5057E-05	0.08786	3.7098E-05	422.237727876365	32.755	1.0504	32.589	32.027	33.077	-0.16565					59	25	3	0	0	0	0.30053	3	2263	2263;2271;2283		111.65	34.802	1	1785400			76598	10817	53412	53501	84484;84485;84486	84484					0.033483450661947245
SSGPQRPSCD	10	Unmodified	_SSGPQRPSCD_					0	0	0		ENST00000318291.4_1_12:752314-752692:+|nuORF	ENST00000318291.4_1_12:752314-752692:+|nuORF	ENST00000318291.4_1_12:752314-752692:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2208862304688	2	517.222005	1032.42946	-1.1555	-0.00059765	-1.1053	-0.00057171	-2.2608	-0.0011694	517.2213934370508	36.13	0.96109	36.087	35.688	36.649	-0.042454					88	26	5	0	0	0	1.0002	1	2823	2823		45.972	3.5761	1	6764700			76599	12174	53413	53502	84487	84487					-0.08546015750061997
SSGRLSLTL	9	Unmodified	_SSGRLSLTL_					0	0	0			REV__nc|ENSG00000159899|P20594-2|NPR2	REV__nc|ENSG00000159899|P20594-2|NPR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.25592041015625	2	467.271824	932.529095	-0.22243	-0.00010393	2.8169	0.0013163	2.5945	0.0012123	467.27291726265054	76.887	0.32904	76.659	76.402	76.731	-0.22843					13	7	2	0	0	0	0.022657	1	9444	9444		110.12	24.76	1	118190	+		76600	25280	53414	53503	84488	84488					0.06013169926200135
SSGSQIIL	8	Unmodified	_SSGSQIIL_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.544189453125	2	402.726718	803.438883	0.13194	5.3135E-05	1.0014	0.00040327	1.1333	0.00045641	402.7269785780134	25.138	0.68832	24.911	24.623	25.311	-0.22683					31	15	3	0	0	0	0.027866	1	1196	1196		17.365	5.8539	1	575710			76601	8413	53415	53504	84489	84489					0.02930120597761743
SSGSQIIL	8	Unmodified	_SSGSQIIL_					0	0	0		nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	nc|ENSG00000173809|Q587J7|TDRD12	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	402.726718	803.438883	-0.59111	-0.00023806	0.91407	0.00036812	0.32296	0.00013006	402.72717567283127	24.872	0.7295	24.837	24.546	25.275	-0.034395	-0.036813	-3.3855E-05	NaN	11.511	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504880			76602	8413	53415	53504							0.02930120597761743
SSGSRYLIRSD	11	Unmodified	_SSGSRYLIRSD_					0	0	0		nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ARHGEF10|p.A1247Vfs*8|1|0.2|ENSG00000104728|chr8:1956892-1956901|GCACTTCCGA/-|frameshift_variant;ENST00000523711.5_1_8:1824717-1874701:+|nuORF	nc|ENSG00000104728|O15013-7|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.2144775390625	3	414.214198	1239.62076	0.30197	0.00012508	-0.33766	-0.00013986	-0.035692	-1.4784E-05	414.2141460658926	24.339	1.0986	24.339	24.036	25.135	0					76	24	5	0	0	0	0.99036	1	1049	1049		38.96	1.4514	1	6486500			76603	2591	53416	53505	84490	84490					0.010538085527059593
SSGVFWIG	8	Unmodified	_SSGVFWIG_					0	0	0		ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.7145080566406	2	426.716153	851.417754	-0.10535	-4.4955E-05	-4.1263	-0.0017608	-4.2317	-0.0018057	426.7140921553188	30.546	1.0539	30.302	29.737	30.791	-0.24415					60	24	4	0	0	0	0.85409	1	1970	1970		54.765	12.369	1	1011200			76604	160	53417	53506	84491	84491					-0.013898447111046153
SSGVFWIG	8	Unmodified	_SSGVFWIG_					0	0	0		ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.7144775390625	2	426.716153	851.417754	-0.44322	-0.00018913	-4.4064	-0.0018803	-4.8496	-0.0020694	426.71418633032175	30.485	1.0507	30.307	29.74	30.791	-0.17818					56	24	4	0	0	0	0.67787	1	1950	1950		69.093	11.282	1	987470			76605	160	53417	53506	84492	84492					-0.013898447111046153
SSGVFWIG	8	Unmodified	_SSGVFWIG_					0	0	0		ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	426.716153	851.417754	-1.4012	-0.0005979	-2.9619	-0.0012639	-4.3631	-0.0018618	426.71473486043493	30.541	1.0321	30.541	30.057	31.089	0	0.16498	0.00086543	NaN	69.093	59	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485430			76606	160	53417	53506							-0.013898447111046153
SSGVFWIG	8	Unmodified	_SSGVFWIG_					0	0	0		ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.716153	851.417754	-0.5507	-0.00023499	-3.8324	-0.0016353	-4.3831	-0.0018703	426.7143723248446	30.474	0.82632	30.483	30.042	30.868	0.0086708	0.1063	0.00012252	NaN	69.093	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447220			76607	160	53417	53506							-0.013898447111046153
SSGVFWIG	8	Unmodified	_SSGVFWIG_					0	0	0		ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	ATP8A1|p.M1053I|1|0.29|ENSG00000124406|chr4:42423670-42423670|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	426.716153	851.417754	0.22091	9.4266E-05	-4.9132	-0.0020966	-4.6923	-0.0020023	426.7138928031486	30.398	1.0991	30.249	29.75	30.849	-0.14952	-0.12781	-0.00079989	NaN	69.093	63	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1034400			76608	160	53417	53506							-0.013898447111046153
SSGVKNTPRWR	11	Unmodified	_SSGVKNTPRWR_					0	0	0		nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	644.349853515625	2	644.34946	1286.68437	0.27072	0.00017444	0.11961	7.7072E-05	0.39034	0.00025151	644.3494009474977	110.4	0.73016	110.41	110.11	110.84	0.0062943					57	20	4	0	0	0	1.0017	1	13895	13895		36.447	1.2947	1	415830			76609	18299	53418	53507	84493	84493					0.05249213780462014
SSGVKNTPRWR	11	Unmodified	_SSGVKNTPRWR_					0	0	0		nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	644.34946	1286.68437	1.2665	0.00081608	-0.31857	-0.00020527	0.94796	0.00061082	644.3484304366172	110.64	0.28214	110.63	110.58	110.86	-0.011299	0.159	0.00076746	NaN	36.447	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56610			76610	18299	53418	53507							0.05249213780462014
SSGVLTPVQL	10	Unmodified	_SSGVLTPVQL_					0	0	0			REV__nc|ENSG00000198911|Q12772-2|SREBF2	REV__nc|ENSG00000198911|Q12772-2|SREBF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7878112792969	2	500.787307	999.560061	0.63598	0.00031849	-0.48179	-0.00024127	0.15419	7.7218E-05	500.7867677057334	72.523	0.88277	72.242	71.991	72.873	-0.28124					37	21	2	0	0	0	0.77808	1	8797	8797		62.107	1.8135	1	4362200	+		76611	28515	53419	53508	84494	84494					0.060263232404167866
SSGVVTGLTVS	11	Unmodified	_SSGVVTGLTVS_					0	0	0			REV__ENSG00000102043|ENST00000374852|MTMR8	REV__ENSG00000102043|ENST00000374852|MTMR8	MSMS	OPSCC_40_ClassI_Rep-2	5	503.7774658203125	2	503.774396	1005.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.516	1	71.254	70.754	71.754	-0.26199								0	0	0	0.94198	1	8361	8361		49.536	3.5841	1		+		76612	21281	53420	53509	84495	84495					0.0316942899814876
SSGVWLPL	8	Unmodified	_SSGVWLPL_					0	0	0		ENST00000343380.5_1_20:32264369-32264531:-|nuORF	ENST00000343380.5_1_20:32264369-32264531:-|nuORF	ENST00000343380.5_1_20:32264369-32264531:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.7362060546875	2	429.739628	857.464704	-0.90283	-0.00038798	-3.7959	-0.0016313	-4.6988	-0.0020193	429.73801164842894	39.807	1.3371	39.695	39.221	40.558	-0.11222					111	36	5	0	0	0	0.58212	1	3482	3482		77.944	6.0664	1	18339000			76613	12529	53421	53510	84496	84496					0.030270148400518337
SSGVWLPL	8	Unmodified	_SSGVWLPL_					0	0	0		ENST00000343380.5_1_20:32264369-32264531:-|nuORF	ENST00000343380.5_1_20:32264369-32264531:-|nuORF	ENST00000343380.5_1_20:32264369-32264531:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	429.7373046875	2	429.739628	857.464704	-0.0065332	-2.8076E-06	-3.6152	-0.0015536	-3.6217	-0.0015564	429.7379804190739	39.971	1.1413	39.74	39.237	40.378	-0.2302					83	29	4	0	0	0	0.37803	1	3433	3433		100.27	20.56	1	6325200			76614	12529	53421	53510	84497	84497					0.030270148400518337
SSHLVRLTV	9	Unmodified	_SSHLVRLTV_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|52|3|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|52|3|sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|52|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.78839111328125	2	506.300916	1010.58728	0.022895	1.1592E-05	1.5339	0.00077661	1.5568	0.0007882	506.30169344142126	49.131	0.28185	49.131	49.005	49.287	0					10	7	2	0	0	0	0.024261	1	5050	5050		54.776	23.247	1	299770			76615	17714	53422	53511	84498	84498					0.0824085157147465
SSHSLSHKGE	10	Unmodified	_SSHSLSHKGE_					0	0	0		MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7586669921875	2	534.757069	1067.49959	-0.46196	-0.00024704	2.7539	0.0014727	2.292	0.0012256	534.7592841268855	73.079	0.6386	72.802	72.454	73.092	-0.2769					30	14	3	0	0	0	0.83673	1	8561	8561		58.23	1.5089	1	1123400			76616	17978	53423	53512	84499	84499					-0.03146394089935711
SSHSLSHKGE	10	Unmodified	_SSHSLSHKGE_					0	0	0		MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MLLT6|p.K313Efs*42|1|0.29|ENSG00000275023|chr17:38715725-38715726|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.7590942382812	2	534.757069	1067.49959	-0.6119	-0.00032722	4.2566	0.0022762	3.6447	0.001949	534.759450542963	73.028	0.54867	72.763	72.469	73.017	-0.26479					36	12	4	0	0	0	0.91678	1	8588	8588		52.937	1.744	1	1171000			76617	17978	53423	53512	84500	84500					-0.03146394089935711
SSIDTNSCDM	10	Unmodified	_SSIDTNSCDM_					0	0	0			REV__ENST00000435641.5_1_6:6362566-6366679:-|nuORF	REV__ENST00000435641.5_1_6:6362566-6366679:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3116455078125	2	536.699714	1071.38487	-0.82683	-0.00044376	0.57206	0.00030702	-0.25477	-0.00013674	537.2010538856766	34.462	0.10712	34.462	34.408	34.515	0					4	2	2	0	0	0	0.03519	1	2575	2575		34.173	0	1	31337	+		76618	32441	53424	53513	84501	84501					-0.14796207678455175
SSIEKLLSH	9	Unmodified	_SSIEKLLSH_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7561950683594	2	507.284931	1012.55531	-0.51991	-0.00026374	1.973	0.0010009	1.4531	0.00073712	507.28454625813674	35.041	0.32466	35.085	34.904	35.229	0.04406					13	8	3	0	0	0	0.024487	1	2590	2590		17.365	0	1	48060	+		76619	24805	53425	53514	84502	84502					0.04953439097675982
SSIFSYLS	8	Unmodified	_SSIFSYLS_					0	0	0			REV__ENST00000425467.5_1_2:37215904-37215991:-|nuORF	REV__ENST00000425467.5_1_2:37215904-37215991:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2485046386719	2	452.226551	902.438549	-0.21978	-9.9392E-05	0.50077	0.00022646	0.28099	0.00012707	452.22530764668454	33.363	0.20745	33.363	33.213	33.421	0					7	5	2	0	0	0	0.027866	1	2375	2375		19.36	0	1	369380	+		76620	32255	53426	53515	84503	84503					-0.01657299122086897
SSIMTFMS	8	Unmodified	_SSIMTFMS_					0	0	0			REV__ENST00000522666.1_1_5:151170606-151175057:+|nuORF	REV__ENST00000522666.1_1_5:151170606-151175057:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2485046386719	2	452.201164	902.387775	-0.2125	-9.6094E-05	1.9482	0.00088097	1.7357	0.00078487	452.2026560100902	33.322	0.34657	33.322	33.174	33.521	0					21	9	4	0	0	0	0.027866	1	2375	2375		47.916	15.961	1	210600	+		76621	34341	53427	53516	84504	84504					-0.06732287762940814
SSIQKPTYSL	10	Unmodified	_SSIQKPTYSL_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2807006835938	2	562.303321	1122.59209	-0.8357	-0.00046992	-0.20656	-0.00011615	-1.0423	-0.00058606	562.3029811800387	62.204	0.57549	62.027	61.728	62.304	-0.17781					43	14	4	0	0	0	0.03519	1	6998	6998		36.447	4.9169	1	1707700			76622	8195	53428	53517	84505	84505					0.035696909235639396
SSIYPSVLAS	10	Unmodified	_SSIYPSVLAS_					0	0	0		ENSG00000065357|ENST00000331886|DGKA;ENST00000552478.5_1_12:56332981-56334773:+|nuORF;ENST00000548047.5_1_12:56333897-56335920:+|nuORF;ENST00000551739.5_1_12:56333995-56337187:+|nuORF	ENSG00000065357|ENST00000331886|DGKA	ENSG00000065357|ENST00000331886|DGKA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2708740234375	2	512.27149	1022.52843	-0.23912	-0.0001225	-0.81194	-0.00041593	-1.0511	-0.00053843	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	1.089	1	13590	13590		34.173	0	1	6463600			76623	1300	53429	53518	84506	84506					0.018063304864767815
SSKEESSVT	9	Unmodified	_SSKEESSVT_					0	0	0		PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant;ENSG00000154415|ENST00000284601|PPP1R3A	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.236572265625	2	477.224736	952.43492	0.34737	0.00016577	-0.49984	-0.00023854	-0.15247	-7.2763E-05	477.22467062261995	31.703	0.44091	31.703	31.469	31.91	0					14	10	2	0	0	0	0.023239	1	2118	2118		84.916	20.708	1	68468			76624	6409	53430	53519	84507	84507					-0.04320013686594848
SSKHKKIHTG	10	Unmodified	_SSKHKKIHTG_					0	0	0		ENST00000397121.2_1_19:22362411-22362768:-|nuORF	ENST00000397121.2_1_19:22362411-22362768:-|nuORF	ENST00000397121.2_1_19:22362411-22362768:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.7901000976562	2	561.822547	1121.63054	-0.26022	-0.0001462	2.3493	0.0013199	2.0891	0.0011737	561.8237271107699	49.192	0.6441	49.01	48.738	49.382	-0.18206					41	16	3	0	0	0	0.03519	1	4884	4884		13.454	2.5885	1	916800			76625	13579	53431	53520	84508	84508					0.074590413487158
SSKKTKLIK	9	Unmodified	_SSKKTKLIK_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2655639648438	2	516.842416	1031.67028	-0.173	-8.9412E-05	-1.0055	-0.00051966	-1.1785	-0.00060907	516.8414164639802	57.066	0.51919	56.902	56.641	57.16	-0.16431					14	9	2	0	0	0	0.024539	1	6410	6410		20.947	1.587	1	132380	+		76626	27172	53432	53521	84509	84509					0.1557116829944789
SSKKVTSA	8	Unmodified	_SSKKVTSA_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.2325439453125	2	404.232168	806.449782	1.3175	0.00053259	-3.7186	-0.0015032	-2.401	-0.00097058	404.22997602134683	87.229	1.783	87.093	86.284	88.067	-0.13613					73	42	2	0	0	0	1.0574	1	10620	10620		11.511	0.64546	1	840690	+		76627	27982	53433	53522	84510	84510					0.038815229720512434
SSKPQRSQ	8	Unmodified	_SSKPQRSQ_					0	0	0		nc|ENSG00000122224|Q9HBG7-4|LY9;nc|ENSG00000122224|Q9HBG7-3|LY9;nc|ENSG00000122224|Q9HBG7-2|LY9;ENSG00000122224|ENST00000263285|LY9	nc|ENSG00000122224|Q9HBG7-4|LY9	nc|ENSG00000122224|Q9HBG7-4|LY9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.243598	916.472643	-0.89045	-0.00040893	-3.5012	-0.0016079	-4.3916	-0.0020168	459.24304224120453	26.233	0.15648	26.069	26.009	26.165	-0.16331					7	4	2	0	0	0	0.027866	1	1324	1324		68.787	0	1	247530			76628	18227	53434	53523	84511	84511					0.011065420895192801
SSKRKHRKYSH	11	Unmodified	_SSKRKHRKYSH_					0	0	0		NKAPL|p.D203H|1|0.31|ENSG00000189134|chr6:28259978-28259978|G/C|missense_variant	NKAPL|p.D203H|1|0.31|ENSG00000189134|chr6:28259978-28259978|G/C|missense_variant	NKAPL|p.D203H|1|0.31|ENSG00000189134|chr6:28259978-28259978|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.74530029296875	3	471.932248	1412.77491	0.18143	8.5624E-05	-1.4072	-0.0006641	-1.2258	-0.00057848	471.9315136733144	49.282	0.39627	49.13	48.97	49.366	-0.15277					15	10	2	0	0	0	0.024727	1	5032	5032		36.318	0	1	124350			76629	18875	53435	53524	84512	84512					0.08503682828745696
SSKRMVLKSVL	11	Unmodified	_SSKRMVLKSVL_					0	0	0			REV__ENST00000520726.1_1_3:169521807-169526495:-|nuORF	REV__ENST00000520726.1_1_3:169521807-169526495:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.8777465820312	2	624.37884	1246.74313	0.43523	0.00027175	2.7399	0.0017108	3.1752	0.0019825	624.3809734772764	106	0.18108	106	105.85	106.03	0					13	7	2	0	0	0	0.9728	1	13613	13613		42.864	2.0861	1	78424	+		76630	34301	53436	53525	84513	84513					0.12962554030582396
SSKSVKEAW	9	Unmodified	_SSKSVKEAW_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.26947021484375	2	511.269281	1020.52401	-0.70752	-0.00036173	0.33564	0.0001716	-0.37188	-0.00019013	511.2694940255907	26.726	1.0349	26.563	26.307	27.342	-0.16331					58	24	3	0	0	0	0.37611	1	1387	1387		67.494	11.989	1	547560			76631	895	53437	53526	84514	84514					0.014568660635632114
SSKSVKEAW	9	Unmodified	_SSKSVKEAW_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.269281	1020.52401	-0.64556	-0.00033005	1.2076	0.00061741	0.56205	0.00028736	511.2696275124702	26.841	0.73674	26.598	26.298	27.035	-0.24217	0.060405	0.00031084	NaN	67.494	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515650			76632	895	53437	53526							0.014568660635632114
SSKSVKEAW	9	Unmodified	_SSKSVKEAW_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.269281	1020.52401	-0.41689	-0.00021314	0.87816	0.00044897	0.46126	0.00023583	511.269329819385	26.621	0.82479	26.453	26.188	27.013	-0.16816	-0.085515	-2.6043E-05	NaN	67.494	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445640			76633	895	53437	53526							0.014568660635632114
SSLAIPPCVI	10	Unmodified	_SSLAIPPCVI_					0	0	0		ENST00000294507.3_1_1:31205334-31205547:-|nuORF	ENST00000294507.3_1_1:31205334-31205547:-|nuORF	ENST00000294507.3_1_1:31205334-31205547:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.31353759765625	2	500.280803	998.547053	-0.26107	-0.00013061	-3.8371	-0.0019196	-4.0982	-0.0020503	500.27851789653965	76.032	0.26865	75.862	75.702	75.97	-0.17026					9	6	3	0	0	0	0.03519	1	9008	9008		37.159	2.9866	1	248700			76634	11817	53438	53527	84515	84515					0.04772168856675307
SSLAKSRVTP	10	Unmodified	_SSLAKSRVTP_					0	0	0			REV__ENSG00000151503|ENST00000534548|NCAPD3	REV__ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3031005859375	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	1.0616	1	10440	10440		37.812	0	1	3714800	+		76635	24776	53439	53528	84516	84516					0.07224530363282611
SSLKNRSAFCS	11	Unmodified	_SSLKNRSAFCS_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.532762	1198.57646	0.23888	9.5678E-05	-0.18361	-7.3543E-05	0.055264	2.2135E-05	400.86849153371935	22.154	0.28453	22.079	21.939	22.223	-0.075296					6	5	2	0	0	0	0.024791	1	739	739		70.412	14.691	1	10865			76636	8449	53440	53529	84517	84517					-0.014889188651295626
SSLKNRSAFCS	11	Unmodified	_SSLKNRSAFCS_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	400.532762	1198.57646	1.1204	0.00044877	5.8704	0.0023513	6.9908	0.0028001	400.535066330889	22.014	0.61936	21.825	21.482	22.102	-0.18894	-0.13113	0.0015894	NaN	70.412	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166980			76637	8449	53440	53529							-0.014889188651295626
SSLKNRSAFCS	11	Unmodified	_SSLKNRSAFCS_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	400.532762	1198.57646	0.69955	0.00028019	6.128	0.0024545	6.8275	0.0027347	400.5352658565171	22.198	0.60976	22.013	21.715	22.325	-0.18539	0.0571	0.0018989	NaN	70.412	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144490			76638	8449	53440	53529							-0.014889188651295626
SSLKNRSAFCS	11	Unmodified	_SSLKNRSAFCS_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	400.532762	1198.57646	-0.69232	-0.0002773	7.7382	0.0030994	7.0459	0.0028221	400.5357662031557	22.109	0.76429	21.907	21.566	22.33	-0.20198	-0.048849	0.0038338	NaN	70.412	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143330			76639	8449	53440	53529							-0.014889188651295626
SSLLALGHFL	10	Unmodified	_SSLLALGHFL_					0	0	0		ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.281494140625	2	529.305667	1056.59678	-1.1857	-0.00062758	0.31197	0.00016513	-0.8737	-0.00046245	529.3058556795789	62.341	0.61394	62.163	61.843	62.457	-0.17781					46	16	4	0	0	0	0.03519	1	6980	6980		21.96	0	1	3672200			76640	11829	53441	53530	84518	84518					0.0707461985698501
SSLLQVLI	8	Unmodified	_SSLLQVLI_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.7747497558594	2	436.776211	871.537869	-0.55494	-0.00024239	-2.6294	-0.0011485	-3.1844	-0.0013909	436.77498916319104	90.192	2.0386	90.067	89.545	91.584	-0.12512					158	48	5	0	0	0	1.0338	1	11086	11086		31.955	1.4512	1	24367000			76641	8599	53442	53531	84519	84519					0.09696143562666748
SSLNECTTKDA	11	Carbamidomethyl (C)	_SSLNEC(Carbamidomethyl (C))TTKDA_	SSLNEC(1)TTKDA		SSLNEC(52)TTKDA		0	1	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.1828308105469	3	409.183687	1224.52923	-0.24849	-0.00010168	-2.4952	-0.001021	-2.7437	-0.0011227	409.18305072452813	25.15	1.5357	24.923	24.451	25.987	-0.22683					130	36	7	0	0	0	0.89117	1	1193	1193		52.167	7.5277	1	7181700			76642	5175	53443	53532	84520	84520	68				-0.07405242926779465
SSLNECTTKDA	11	Carbamidomethyl (C)	_SSLNEC(Carbamidomethyl (C))TTKDA_	SSLNEC(1)TTKDA		SSLNEC(65)TTKDA		0	1	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.182861328125	3	409.183687	1224.52923	0.18586	7.6053E-05	-2.9522	-0.001208	-2.7664	-0.001132	409.1828105117161	24.973	1.3976	24.798	24.296	25.694	-0.17484					117	32	6	0	0	0	0.67481	2	1143	1131;1143		65.278	19.369	1	8300800			76643	5175	53443	53532	84521;84522	84522	68				-0.07405242926779465
SSLSQESMQFS	11	Unmodified	_SSLSQESMQFS_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.5246887207031	3	410.848416	1229.52342	0.077155	3.1699E-05	0.4444	0.00018258	0.52155	0.00021428	410.84857250904474	55.176	0.14055	54.945	54.891	55.032	-0.23087					6	3	2	0	0	0	0.024763	1	5895	5895		42.243	18.011	1	90780	+		76644	26592	53444	53533	84523	84523					-0.08216341438446761
SSLTKDAL	8	Unmodified	_SSLTKDAL_					0	0	0		ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.7328186035156	2	417.732	833.449448	-0.71424	-0.00029836	2.449	0.001023	1.7348	0.00072468	417.7329459232781	39.272	0.90195	39.108	38.829	39.731	-0.16458					58	23	4	0	0	0	0.97794	1	3316	3316		40.778	0.20554	1	5841200			76645	4173	53445	53534	84524	84524					0.026061032521852212
SSLTKDAL	8	Unmodified	_SSLTKDAL_					0	0	0		ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	MSMS	OPSCC_40_ClassI_Rep-3	6	417.7327880859375	2	417.732	833.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.352	1	39.127	38.627	39.627	-0.2257								0	0	0	0.58353	1	3310	3310		49.442	1.5259	1				76646	4173	53445	53534	84525	84525					0.026061032521852212
SSLTKDAL	8	Unmodified	_SSLTKDAL_					0	0	0		ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	MSMS	OPSCC_40_ClassI_Rep-3	6	417.7329406738281	2	417.732	833.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.493	1	39.268	38.768	39.768	-0.2257								0	0	0	0.63389	1	3333	3333		45.952	1.8352	1				76647	4173	53445	53534	84526	84526					0.026061032521852212
SSLTVVVF	8	Unmodified	_SSLTVVVF_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.24627685546875	2	426.247286	850.48002	0.80944	0.00034502	-3.6413	-0.0015521	-2.8319	-0.0012071	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	1.0572	1	10557	10557		28.254	1.4582	1	12732000			76648	7090	53446	53535	84527	84527					0.04879881637236849
SSLVAKKL	8	Unmodified	_SSLVAKKL_					0	0	0			REV__ENSG00000198087|ENST00000359314|CD2AP	REV__ENSG00000198087|ENST00000359314|CD2AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.2757873535156	2	423.276378	844.538203	0.052604	2.2266E-05	-3.1925	-0.0013513	-3.1399	-0.0013291	423.274922783063	110.18	0.56607	110.17	109.97	110.53	-0.009491					47	22	3	0	0	0	1.0338	1	13919	13919		31.955	13.63	1	513920	+		76649	28382	53447	53536	84528	84528					0.10971563282521402
SSLVESFSI	9	Unmodified	_SSLVESFSI_					0	0	0		nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.78509521484375	2	484.75039	967.486227	-0.082671	-4.0075E-05	-3.2008	-0.0015516	-3.2835	-0.0015917	484.74858855400316	24.538	0.27551	24.616	24.547	24.823	0.078344					8	5	2	0	0	0	0.024405	1	1050	1050		20.947	0	1	24105			76650	6693	53448	53537	84529	84529					0.0011835507809792034
SSLVESFSI	9	Unmodified	_SSLVESFSI_					0	0	0		nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.75039	967.486227	-0.59638	-0.00028909	-1.9608	-0.00095048	-2.5571	-0.0012396	484.7494767282514	24.653	0.22373	24.653	24.474	24.697	0	0.01848	0.0014784	NaN	19.997	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21257			76651	6693	53448	53537							0.0011835507809792034
SSLVESFSI	9	Unmodified	_SSLVESFSI_					0	0	0		nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.75039	967.486227	-0.17722	-8.5909E-05	-2.6192	-0.0012697	-2.7965	-0.0013556	484.7489250852071	24.832	0.39398	24.657	24.383	24.777	-0.17484	0.02269	0.00083995	NaN	19.997	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42580			76652	6693	53448	53537							0.0011835507809792034
SSLVFSVTP	9	Unmodified	_SSLVFSVTP_					0	0	0		ENST00000507439.5_1_4:17488646-17488742:-|nuORF	ENST00000507439.5_1_4:17488646-17488742:-|nuORF	ENST00000507439.5_1_4:17488646-17488742:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7522888183594	2	468.755475	935.496398	-0.1316	-6.1688E-05	-4.0331	-0.0018905	-4.1647	-0.0019522	468.7533323775128	30.356	0.41427	30.43	30.212	30.626	0.074316					16	9	2	0	0	0	0.024457	1	1874	1874		21.96	0	1	142750			76653	15762	53449	53538	84530	84530					0.026069628033383196
SSLVSNVRFS	10	Unmodified	_SSLVSNVRFS_					0	0	0		nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	nc|ENSG00000164306|Q96LW4-2|PRIMPOL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2953491210938	2	548.293288	1094.57202	-0.17387	-9.5334E-05	3.5434	0.0019428	3.3696	0.0018475	548.2954263427797	19.621	2.2207	19.621	19.317	21.537	0					119	45	5	0	0	0	1.0074	1	420	420		45.022	2.1579	1	7603900			76654	7256	53450	53539	84531	84531					0.028519399836113735
SSLVTLCY	8	Unmodified	_SSLVTLCY_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.7646789550781	2	443.222954	884.431355	-0.63598	-0.00028188	-2.0796	-0.00092171	-2.7155	-0.0012036	443.2220900920334	92.064	0.36684	92.064	91.772	92.139	0					11	8	2	0	0	0	0.027866	1	11664	11664		26.796	1.3459	1	91380			76655	2241	53451	53540	84532	84532					-0.015483549941791352
SSLVTLCY	8	Unmodified	_SSLVTLCY_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	443.222954	884.431355	0.39658	0.00017578	1.5474	0.00068586	1.944	0.00086164	443.22476191299774	92.046	1.0559	92.056	91.875	92.931	0.0094147	0.017891	0.0024736	NaN	12.959	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171400			76656	2241	53451	53540							-0.015483549941791352
SSLVVGVF	8	Unmodified	_SSLVVGVF_					0	0	0			REV__ENSG00000133104|ENST00000438666|SPART;REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF	REV__ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2330017089844	2	404.234179	806.453805	0.2566	0.00010373	-4.2648	-0.001724	-4.0082	-0.0016203	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0572	1	10270	10270		28.254	6.5519	1	12775000	+		76657	23348;33805	53452	53541	84533	84533					0.04283612465769693
SSLYWLGY	8	Unmodified	_SSLYWLGY_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7405090332031	2	494.742368	987.470183	-0.74452	-0.00036835	-3.3832	-0.0016738	-4.1277	-0.0020421	494.74059134076685	53.446	1.7531	53.319	52.874	54.627	-0.12705					116	50	4	0	0	0	0.71717	1	5654	5654		65.897	2.919	1	6980700	+		76658	22224	53453	53542	84534	84534					-0.024053063681549247
SSMAKISRS	9	Unmodified	_SSMAKISRS_					0	0	0		ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1	ENSG00000137802|ENST00000457542|MAPKBP1	ENSG00000137802|ENST00000457542|MAPKBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.23760986328125	2	483.755484	965.496415	-0.22096	-0.00010689	1.1613	0.00056176	0.94029	0.00045487	483.7567745728758	40.674	0.73152	40.449	39.852	40.583	-0.225					27	19	3	0	0	0	0.024436	1	3549	3549		23.042	0	1	1373500			76659	5155	53454	53543	84535	84535					0.012286395317005372
SSMLCRGAE	9	Unmodified	_SSMLCRGAE_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.236572265625	2	477.212595	952.410636	0.20325	9.6992E-05	0.73419	0.00035036	0.93744	0.00044736	477.21283234184443	31.474	0.69434	31.474	31.216	31.91	0					38	16	3	0	0	0	0.022832	1	2118	2118		82.241	18.033	1	540250	+		76660	21065	53455	53544	84536	84536					-0.06747268645483473
SSMLLLRLS	9	Oxidation (M)	_SSM(Oxidation (M))LLLRLS_		SSM(1)LLLRLS		SSM(59)LLLRLS	0	0	1		ZACN|p.L253Vfs*8|1|0.25|ENSG00000186919|chr17:76081625-76081626|-/G|frameshift_variant;nc|ENSG00000186919|Q401N2-2|ZACN;ENSG00000186919|ENST00000334586|ZACN	ZACN|p.L253Vfs*8|1|0.25|ENSG00000186919|chr17:76081625-76081626|-/G|frameshift_variant	ZACN|p.L253Vfs*8|1|0.25|ENSG00000186919|chr17:76081625-76081626|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.297119140625	2	518.296985	1034.57942	-0.17628	-9.1363E-05	0.41943	0.00021739	0.24316	0.00012603	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.50848	1	13239	13239		58.782	7.4465	1	66134000			76661	9595	53456	53545	84537	84537		395			0.06350956259666418
SSMLPAFLKP	10	Unmodified	_SSMLPAFLKP_					0	0	0		nc|ENSG00000172059|O14901-2|KLF11;ENSG00000172059|ENST00000305883|KLF11	nc|ENSG00000172059|O14901-2|KLF11	nc|ENSG00000172059|O14901-2|KLF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.8032836914062	2	545.801903	1089.58925	-1.132	-0.00061784	3.8522	0.0021025	2.7202	0.0014847	545.8039131710468	44.957	0.92638	44.957	44.587	45.514	0					74	26	4	0	0	0	0.74632	2	4341	4330;4341		64.207	6.396	1	4705800			76662	8237	53457	53546	84538;84539	84539					0.04804144265040122
SSMMVLQV	8	Unmodified	_SSMMVLQV_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.25146484375	2	447.724806	893.43506	-0.50639	-0.00022673	1.6481	0.0007379	1.1417	0.00051117	447.7254535640963	25.639	0.55083	25.605	25.392	25.943	-0.034395					19	12	3	0	0	0	0.027866	1	1192	1192		19.36	0	1	95624			76663	14897	53458	53547	84540	84540					-0.01592008491957131
SSMNRVQQVEL	11	Unmodified	_SSMNRVQQVEL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.88604736328125	3	430.887205	1289.63978	-0.47163	-0.00020322	-2.5342	-0.0010919	-3.0058	-0.0012952	430.88637375384116	22.08	2.8044	22.08	21.146	23.951	0					130	61	5	0	0	0	0.97926	1	744	744		36.528	1.3497	1	2635400			76664	909	53459	53548	84541	84541					0.006550218521169882
SSMTSDEPQRY	11	Unmodified	_SSMTSDEPQRY_					0	0	0		ENST00000521972.1_1_8:59498446-59499134:-|nuORF	ENST00000521972.1_1_8:59498446-59499134:-|nuORF	ENST00000521972.1_1_8:59498446-59499134:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.75921630859375	3	434.18732	1299.54013	-0.20819	-9.0393E-05	4.0324	0.0017508	3.8242	0.0016604	434.1891040831684	21.824	0.47673	21.734	21.591	22.067	-0.090092					15	9	2	0	0	0	0.024723	1	687	687		28.577	8.2617	1	18691			76665	16020	53460	53549	84542	84542					-0.0976584055249532
SSNNTGSSSL	10	Unmodified	_SSNNTGSSSL_					0	0	0			REV__ENST00000373578.6_1_20:36032386-36033025:+|nuORF	REV__ENST00000373578.6_1_20:36032386-36033025:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2380065917969	2	477.21216	952.409768	0.11293	5.3891E-05	2.173	0.001037	2.286	0.0010909	477.2131522056314	31.391	0.73247	31.402	31.17	31.902	0.011797					31	17	2	0	0	0	0.03519	1	2131	2131		120.87	3.9648	1	535480	+		76666	31261	53461	53550	84543	84543					-0.06834068489172296
SSPAEKAALE	10	Unmodified	_SSPAEKAALE_					0	0	0		ENSG00000161558|ENST00000293261|TMEM143;ENST00000595720.5_1_19:48846576-48867177:-|nuORF	ENSG00000161558|ENST00000293261|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8241271972656	2	501.758746	1001.50294	-0.26013	-0.00013052	-1.9931	-0.001	-2.2532	-0.0011306	501.75601477758136	33.862	0.55161	33.857	33.561	34.112	-0.0045624					21	13	2	0	0	0	0.03519	1	2422	2422		39.253	20.991	1	112130			76667	6880	53462	53551	84544	84544					0.002248559640520398
SSPAEKAALE	10	Unmodified	_SSPAEKAALE_					0	0	0		ENSG00000161558|ENST00000293261|TMEM143;ENST00000595720.5_1_19:48846576-48867177:-|nuORF	ENSG00000161558|ENST00000293261|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.758746	1001.50294	-0.29465	-0.00014784	1.8169	0.00091166	1.5223	0.00076381	502.26147066211803	33.914	0.44441	33.971	33.693	34.137	0.056572	0.056678	0.0011612	NaN	39.253	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76800			76668	6880	53462	53551							0.002248559640520398
SSPAFSVVSL	10	Unmodified	_SSPAFSVVSL_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2685546875	2	497.266207	992.517862	-0.35959	-0.00017881	4.4429	0.0022093	4.0833	0.0020305	497.26837861192877	36.109	3.0502	36.147	35.652	38.702	0.038044					198	83	4	0	0	0	0.64538	2	2736	2736;2807		71.877	3.9133	1	12565000	+		76669	26799	53463	53552	84545;84546	84545					0.02130347832053303
SSPAIPPVLL	10	Unmodified	_SSPAIPPVLL_					0	0	0		ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2684326171875	2	497.302593	992.590633	-0.37702	-0.00018749	-0.68427	-0.00034029	-1.0613	-0.00052778	497.30324181602555	35.289	0.3987	35.289	35.056	35.455	0					13	10	2	0	0	0	0.03519	1	2711	2711		55.504	9.5523	1	39877			76670	8317	53464	53553	84547	84547					0.09404101625477779
SSPAIPPVLL	10	Unmodified	_SSPAIPPVLL_					0	0	0		ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	ENSG00000172888|ENST00000339296|ZNF621	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2689514160156	2	497.302593	992.590633	-0.98519	-0.00048994	-3.101	-0.0015421	-4.0862	-0.0020321	497.30082464208346	36.267	0.45308	36.224	35.896	36.349	-0.042458					29	12	3	0	0	0	0.03519	1	2829	2829		53.351	9.2347	1	432840			76671	8317	53464	53553	84548	84548					0.09404101625477779
SSPDWPPAS	9	Unmodified	_SSPDWPPAS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2876892089844	2	472.211432	942.408311	-0.51687	-0.00024407	0.52568	0.00024823	0.0088105	4.1604E-06	472.2129054972028	94.29	0.32522	94.153	94.008	94.333	-0.13779					12	7	2	0	0	0	0.024436	1	11611	11611		30.504	2.6214	1	71195			76672	9025	53465	53554	84549	84549					-0.0651965778728254
SSPHDKNLP	9	Unmodified	_SSPHDKNLP_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2680969238281	2	497.751256	993.487959	-0.93768	-0.00046673	1.3703	0.00068205	0.43259	0.00021532	497.75203011417517	35.152	0.79224	35.131	34.634	35.426	-0.021767					31	20	2	0	0	0	0.024021	1	2671	2671		49.442	7.0454	1	212680			76673	774	53466	53555	84550	84550					-0.00904591113294373
SSPKDVVVV	9	Unmodified	_SSPKDVVVV_					0	0	0			REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2	REV__nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2691955566406	2	465.26875	928.522947	0.54205	0.0002522	-0.76513	-0.00035599	-0.22308	-0.00010379	465.26837038416454	66.032	1.6581	66.062	65.737	67.396	0.030098					76	44	5	0	0	0	0.53979	1	7748	7748		56.721	0	1	15638000	+		76674	25973	53467	53556	84551	84551					0.05582651694669494
SSPLPGGTSP	10	Unmodified	_SSPLPGGTSP_					0	0	0		ENST00000555997.1_1_14:69255564-69255801:-|nuORF	ENST00000555997.1_1_14:69255564-69255801:-|nuORF	ENST00000555997.1_1_14:69255564-69255801:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.26885986328125	2	450.227082	898.439611	-1.4592	-0.00065698	-4.1344	-0.0018614	-5.5936	-0.0025184	450.22535445926957	38.186	0.40956	38.213	37.987	38.397	0.027275					26	11	3	0	0	0	0.03519	1	3089	3089		45.972	3.4978	1	376340			76675	16698	53468	53557	84552	84552					-0.01367084753189829
SSPPPCPPVL	10	Unmodified	_SSPPPCPPVL_					0	0	0		nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;PRDM2|p.T1015Pfs*26|1|0.37|ENSG00000116731|chr1:13780836-13780836|C/-|frameshift_variant;nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2	nc|ENSG00000116731|Q13029-2|PRDM2	nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.25091552734375	2	497.257328	992.500103	-0.56696	-0.00028192	-2.1232	-0.0010558	-2.6901	-0.0013377	497.2561913572414	29.293	0.67303	29.296	28.796	29.469	0.0031357					26	16	2	0	0	0	0.03519	1	1732	1732		23.042	1.0826	1	358500			76676	3572	53469	53558	84553	84553					0.00355309305530227
SSPQGRAQ	8	Unmodified	_SSPQGRAQ_					0	0	0			REV__ENST00000352203.8_1_19:47341479-47341707:-|nuORF	REV__ENST00000352203.8_1_19:47341479-47341707:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	415.70953369140625	2	415.709391	829.404229	-0.83536	-0.00034727	0.90737	0.0003772	0.072001	2.9931E-05	415.7097107306702	26.257	2.915	26.021	25.803	28.718	-0.23603					131	72	3	0	0	0	1.0198	1	1374	1374		34.173	0.65696	1	12481000	+		76677	30736	53470	53559	84554	84554					-0.017297024903427882
SSPQGRAQ	8	Unmodified	_SSPQGRAQ_					0	0	0			REV__ENST00000352203.8_1_19:47341479-47341707:-|nuORF	REV__ENST00000352203.8_1_19:47341479-47341707:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.70947265625	2	415.709391	829.404229	-0.30723	-0.00012772	0.073528	3.0566E-05	-0.2337	-9.715E-05	415.70940807998153	26.102	2.1457	25.934	25.662	27.808	-0.16816					116	54	3	0	0	0	0.97794	1	1325	1325		40.778	0	1	16521000	+		76678	30736	53470	53559	84555	84555					-0.017297024903427882
SSPRSAVRL	9	Unmodified	_SSPRSAVRL_					0	0	0			REV__ENST00000488667.1_1_7:97880538-97880580:-|nuORF	REV__ENST00000488667.1_1_7:97880538-97880580:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2884216308594	2	486.78289	971.551228	-0.062141	-3.0249E-05	2.5275	0.0012304	2.4654	0.0012001	486.7840873389947	100.84	2.4226	100.84	100.31	102.73	0					163	55	6	0	0	0	0.17845	1	12860	12860		93.143	2.7734	1	21803000	+		76679	33652	53471	53560	84556	84556					0.06431394394610379
SSQGDNNLQKL	11	Unmodified	_SSQGDNNLQKL_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	401.87115478515625	3	401.87032	1202.58913	1.9526	0.00078469	0.83776	0.00033667	2.7904	0.0011214	401.87052067369933	30.577	1.037	30.651	30.296	31.333	0.074314					55	24	4	0	0	0	0.97516	1	1928	1928		42.338	0.91146	1	1515300			76680	3341	53472	53561	84557	84557					-0.004061842012561101
SSQLAKLVW	9	Unmodified	_SSQLAKLVW_					0	0	0			REV__nc|ENSG00000176659|Q8N268|LINC02910	REV__nc|ENSG00000176659|Q8N268|LINC02910	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2967529296875	2	516.297842	1030.58113	0.086749	4.4788E-05	-2.5022	-0.0012919	-2.4154	-0.0012471	516.2963871309064	36.943	1.0938	36.75	36.375	37.469	-0.193					96	27	5	0	0	0	0.39228	1	2921	2921		66.429	7.6473	1	5683300	+		76681	36966	53473	53562	84558	84558					0.06706333339957382
SSQPRNDFG	9	Unmodified	_SSQPRNDFG_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant;ENST00000571676.5_1_16:11858892-11864657:-|nuORF	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.8247985839844	2	504.230687	1006.44682	1.2994	0.0006552	3.8641	0.0019484	5.1635	0.0026036	504.2325574239754	17.487	0.24854	17.333	17.259	17.507	-0.15403					5	4	2	0	0	0	0.024447	1	196	196		49.442	12.282	1	16199			76682	3918	53474	53563	84559	84559					-0.056143521527587836
SSQRKSWH	8	Unmodified	_SSQRKSWH_					0	0	0		TMPRSS2-HSF2BP|2|fusion;TMPRSS2-HSF2BP|1|fusion;ENSG00000184012|ENST00000332149|TMPRSS2;nc|ENSG00000184012|O15393-2|TMPRSS2	TMPRSS2-HSF2BP|2|fusion	TMPRSS2-HSF2BP|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3034362792969	2	508.25704	1014.49953	-0.56548	-0.00028741	-0.88649	-0.00045056	-1.452	-0.00073797	508.2537083619389	26.205	0.32157	26.182	26.083	26.405	-0.023088					20	7	5	0	0	0	0.027866	1	1297	1297		52.299	0	1	121500			76683	9300	53475	53564	84560	84560					-0.007143492993009204
SSQSIPVV	8	Unmodified	_SSQSIPVV_					0	0	0		nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2;nc|ENSG00000173698|Q8IZP9-10|ADGRG2;ADGRG2|p.S256F|1|0.4|ENSG00000173698|chrX:19014018-19014018|G/A|missense_variant	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.509765625	2	408.726718	815.438883	0.4161	0.00017007	0.62091	0.00025378	1.037	0.00042385	408.7269396975652	27.451	0.7229	27.533	27.357	28.08	0.081293					26	18	2	0	0	0	0.027866	1	1536	1536		31.955	0	1	178670			76684	8400	53476	53565	84561	84561					0.023781205977684294
SSQSLHLT	8	Unmodified	_SSQSLHLT_					0	0	0		ENST00000559000.5_1_15:57209963-57210377:-|nuORF	ENST00000559000.5_1_15:57209963-57210377:-|nuORF	ENST00000559000.5_1_15:57209963-57210377:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.76123046875	2	436.727249	871.439946	-0.10887	-4.7548E-05	0.32092	0.00014015	0.21204	9.2605E-05	436.7273466127014	33.75	0.81128	33.745	33.449	34.261	-0.0045624					27	20	2	0	0	0	0.027866	1	2512	2512		29.15	9.1528	1	144160			76685	16767	53477	53566	84562	84562					-0.0009166503333517539
SSQSLHLT	8	Unmodified	_SSQSLHLT_					0	0	0		ENST00000559000.5_1_15:57209963-57210377:-|nuORF	ENST00000559000.5_1_15:57209963-57210377:-|nuORF	ENST00000559000.5_1_15:57209963-57210377:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	436.727249	871.439946	0.30619	0.00013372	0.92893	0.00040569	1.2351	0.00053941	436.7272764221029	33.679	0.55045	33.735	33.461	34.012	0.056572	-0.0049561	0.00034637	NaN	29.15	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133910			76686	16767	53477	53566							-0.0009166503333517539
SSQTSSVMPI	10	Unmodified	_SSQTSSVMPI_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8091430664062	2	518.752607	1035.49066	-0.64689	-0.00033557	-2.8795	-0.0014937	-3.5263	-0.0018293	518.7499018002173	37.974	0.57607	37.795	37.593	38.17	-0.17929					25	16	2	0	0	0	0.03519	1	3085	3085		28.081	0	1	251860	+		76687	21256	53478	53567	84563	84563					-0.025665037706403382
SSQVKYRE	8	Unmodified	_SSQVKYRE_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7612609863281	2	498.759081	995.503609	3.692	0.0018414	1.1673	0.00058218	4.8592	0.0024236	498.7595237184479	16.588	0.44605	16.588	16.461	16.907	0					26	14	3	0	0	0	1.0198	1	71	71		34.173	5.023	1	241180			76688	9199	53479	53568	84564	84564					0.005676954037539872
SSQYRIKEY	9	Unmodified	_SSQYRIKEY_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	587.2958984375	2	587.29857	1172.58259	-1.1804	-0.00069323	-3.4268	-0.0020126	-4.6072	-0.0027058	587.2964287549934	73.827	0.49075	73.556	73.241	73.731	-0.27126					41	12	4	0	0	0	0.99726	1	9005	9005		20.947	0.4651	1	12219000			76689	6204	53480	53569	84565	84565					0.003199226380502296
SSRGAKTT	8	Unmodified	_SSRGAKTT_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;ENST00000481328.7_1_11:76905078-76923312:+|nuORF	nc|ENSG00000137474|Q13402-8|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.2328796386719	2	404.219591	806.42463	1.0259	0.00041467	0.030368	1.2275E-05	1.0562	0.00042695	404.21917279379727	84.559	0.63541	84.356	84.038	84.673	-0.20329					25	14	3	0	0	0	0.027866	1	10213	10213		26.693	10.22	1	153920			76690	18314	53481	53570	84566	84566					0.013674681694624269
SSRHFSKSDS	10	Unmodified	_SSRHFSKSDS_					0	0	0		nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENSG00000110066|ENST00000304363|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2675170898438	2	569.267801	1136.52105	0.31757	0.00018078	-0.76011	-0.0004327	-0.44254	-0.00025192	569.2673127638058	23.413	2.6043	23.212	21.231	23.835	-0.20193					194	56	4	0	0	0	0.72729	1	935	935		65.465	12.114	1	2615500			76691	3019	53482	53571	84567	84567					-0.04175009061214041
SSRHFSKSDS	10	Unmodified	_SSRHFSKSDS_					0	0	0		nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENSG00000110066|ENST00000304363|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2678833007812	2	569.267801	1136.52105	0.49154	0.00027982	-0.56463	-0.00032142	-0.073087	-4.1606E-05	569.2673841540674	18.747	3.0543	18.543	17.667	20.722	-0.20371					134	61	4	0	0	0	1.0616	1	323	323		37.812	4.9991	1	307860			76692	3019	53482	53571	84568	84568					-0.04175009061214041
SSRHFSKSDS	10	Unmodified	_SSRHFSKSDS_					0	0	0		nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENSG00000110066|ENST00000304363|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2664184570312	2	569.267801	1136.52105	-0.21662	-0.00012331	-0.1676	-9.5407E-05	-0.38421	-0.00021872	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	0.57594	2	809	809;880		79.713	24.208	1	3402100			76693	3019	53482	53571	84569;84570	84569					-0.04175009061214041
SSRHFSKSDS	10	Unmodified	_SSRHFSKSDS_					0	0	0		nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENSG00000110066|ENST00000304363|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	nc|ENSG00000110066|Q4FZB7-4|KMT5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.267578125	2	569.267801	1136.52105	1.542	0.0008778	-1.9417	-0.0011053	-0.39968	-0.00022752	569.2666143856402	23.42	2.4126	23.229	21.336	23.749	-0.19117					187	52	5	0	0	0	0.82838	3	874	827;874;901		58.782	2.3482	1	2894000			76694	3019	53482	53571	84571;84572;84573	84572					-0.04175009061214041
SSRKLRLGA	9	Unmodified	_SSRKLRLGA_					0	0	0		ENST00000262407.5_1_17:42452444-42453079:-|nuORF	ENST00000262407.5_1_17:42452444-42453079:-|nuORF	ENST00000262407.5_1_17:42452444-42453079:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2894592285156	2	494.306532	986.598512	0.48775	0.0002411	1.8891	0.00093377	2.3768	0.0011749	494.30797140018063	61.428	0.53981	61.428	61.18	61.72	0					29	13	3	0	0	0	0.024447	1	7081	7081		40.778	5.1599	1	1205800			76695	11499	53483	53572	84574	84574					0.10467673665607435
SSRKNVLEL	9	Unmodified	_SSRKNVLEL_					0	0	0		ENST00000529357.5_1_17:43475293-43487738:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27;ENST00000526484.5_1_17:43479016-43481453:-|nuORF	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3035278320312	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.91321	1	10280	10280		31.53	2.3598	1	3714800			76696	16207	53484	53573	84575	84575					0.07224530363282611
SSRMVVDLD	9	Unmodified	_SSRMVVDLD_					0	0	0			REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF	REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2754211425781	2	511.252774	1020.491	0.17282	8.8352E-05	-3.8209	-0.0019534	-3.6481	-0.0018651	511.75244590056855	76.796	0.75753	76.528	76.129	76.887	-0.26806					27	17	2	0	0	0	0.024418	1	9087	9087		30.318	19.452	1	211690	+		76697	20315	53485	53574	84576	84576					-0.018430840507903667
SSRPARFLR	9	Unmodified	_SSRPARFLR_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3163452148438	2	545.317432	1088.62031	-0.95668	-0.0005217	-0.29702	-0.00016197	-1.2537	-0.00068367	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.93097	1	11213	11213		30.318	3.5216	1	15621000			76698	1973	53486	53575	84577	84577					0.07954478414171717
SSRPWSTP	8	Unmodified	_SSRPWSTP_					0	0	0		HOXD4|p.P104Rfs*34|1|0.35|ENSG00000170166|chr2:176151943-176151943|C/-|frameshift_variant	HOXD4|p.P104Rfs*34|1|0.35|ENSG00000170166|chr2:176151943-176151943|C/-|frameshift_variant	HOXD4|p.P104Rfs*34|1|0.35|ENSG00000170166|chr2:176151943-176151943|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2249450683594	2	459.227417	916.44028	-0.63791	-0.00029294	-4.1738	-0.0019167	-4.8117	-0.0022097	459.2256023031956	26.277	2.3769	26.041	25.593	27.97	-0.23603					166	59	4	0	0	0	0.80469	1	1378	1378		58.782	4.0173	1	35750000			76699	17743	53487	53576	84578	84578					-0.021282453134745083
SSSGWLMLGL	10	Unmodified	_SSSGWLMLGL_					0	0	0			REV__ENST00000597004.1_1_19:54007212-54015300:+|nuORF	REV__ENST00000597004.1_1_19:54007212-54015300:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7950439453125	2	525.76806	1049.52157	-0.58049	-0.0003052	-3.3791	-0.0017766	-3.9595	-0.0020818	525.7661099532518	31.109	0.66794	30.868	30.627	31.295	-0.24109					43	16	4	0	0	0	0.03519	1	2065	2065		23.042	0	1	1238200	+		76700	35798	53488	53577	84579	84579					-0.001213056657661582
SSSHHHLDSE	10	Unmodified	_SSSHHHLDSE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.24609375	2	568.241783	1134.46901	2.8847	0.0016392	3.7079	0.002107	6.5926	0.0037462	568.2437166632636	17.013	0.32669	17.013	16.874	17.201	0					14	7	3	0	0	0	1.0781	1	112	112		35.618	6.4687	1	61479	+		76701	36804	53489	53578	84580	84580					-0.09284172475008745
SSSIAAPRPK	10	Unmodified	_SSSIAAPRPK_					0	0	0			REV__nc|ENSG00000147394|O15231-8|ZNF185	REV__nc|ENSG00000147394|O15231-8|ZNF185	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.29107666015625	2	507.290548	1012.56654	-1.1943	-0.00060585	3.5884	0.0018204	2.3941	0.0012145	507.29159519554474	21.127	0.88763	20.914	20.475	21.363	-0.2128					39	17	4	0	0	0	1.1217	1	594	594		21.96	0	1	223580	+		76702	24549	53490	53579	84581	84581					0.060762611917994036
SSSKKSKV	8	Unmodified	_SSSKKSKV_					0	0	0		ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	425.7749938964844	2	425.753267	849.491981	-0.095907	-4.0833E-05	-3.3093	-0.0014089	-3.4052	-0.0014498	425.7520742414864	41.971	0.32861	41.971	41.825	42.154	0					19	9	3	0	0	0	0.027866	1	3835	3835		3.6843	0	1	351490			76703	16810	53491	53580	84582	84582					0.06121498380423418
SSSKKSKV	8	Unmodified	_SSSKKSKV_					0	0	0		ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2462158203125	2	425.753267	849.491981	0.027448	1.1686E-05	-1.2714	-0.00054129	-1.2439	-0.0005296	425.75280572141145	87.932	0.92745	87.753	87.196	88.123	-0.17874					40	22	3	0	0	0	0.027866	1	10625	10625		3.1592	0.2298	1	343540			76704	16810	53491	53580	84583	84583					0.06121498380423418
SSSKKSKV	8	Unmodified	_SSSKKSKV_					0	0	0		ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.753267	849.491981	-0.04194	-1.7856E-05	-1.4875	-0.00063333	-1.5295	-0.00065118	425.7525009719535	87.761	0.76373	87.761	87.491	88.255	0	-0.011279	0.00046269	NaN	6.7355	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473060			76705	16810	53491	53580							0.06121498380423418
SSSKKSKV	8	Unmodified	_SSSKKSKV_					0	0	0		ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	425.753267	849.491981	0.35776	0.00015232	-1.2394	-0.00052767	-0.88163	-0.00037535	425.7528230982597	87.811	0.97322	87.775	87.236	88.209	-0.035355	0.0030265	0.000674	NaN	6.7355	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498690			76706	16810	53491	53580							0.06121498380423418
SSSKKSKV	8	Unmodified	_SSSKKSKV_					0	0	0		ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	425.753267	849.491981	0.52005	0.00022141	-2.2962	-0.00097763	-1.7762	-0.00075622	425.75228754907783	87.954	0.55035	87.817	87.516	88.067	-0.13613	0.045163	-0.00022593	NaN	6.7355	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288300			76707	16810	53491	53580							0.06121498380423418
SSSKKSKV	8	Unmodified	_SSSKKSKV_					0	0	0		ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	425.753267	849.491981	0.38761	0.00016503	-2.2588	-0.00096171	-1.8712	-0.00079668	425.7523229380548	87.892	0.51901	87.754	87.502	88.021	-0.13744	-0.018123	-0.00019408	NaN	6.7355	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151460			76708	16810	53491	53580							0.06121498380423418
SSSLLDQFNI	10	Unmodified	_SSSLLDQFNI_					0	0	0			REV__ENST00000222573.4_1_7:20451505-20451688:+|nuORF	REV__ENST00000222573.4_1_7:20451505-20451688:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.3115844726562	2	562.285128	1122.5557	0.23543	0.00013238	3.844	0.0021614	4.0795	0.0022938	562.2872263764297	88.012	1.1125	87.985	87.661	88.774	-0.027664					60	26	4	0	0	0	0.03519	1	11041	11041		93.143	13.692	1	1241600	+		76709	29358	53492	53581	84584	84584					-0.0006718597312556085
SSSMRRLSN	9	Unmodified	_SSSMRRLSN_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4|QRICH2	REV__nc|ENSG00000129646|Q9H0J4|QRICH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7774658203125	2	519.261465	1036.50838	-0.70302	-0.00036505	-1.1303	-0.00058693	-1.8333	-0.00095198	519.2624028416677	29.81	0.2048	29.818	29.717	29.922	0.0086708					6	4	2	0	0	0	0.024484	1	1840	1840		17.468	0	1	19268	+		76710	23055	53493	53582	84585	84585					-0.008417437251182491
SSSPEVKGYW	10	Unmodified	_SSSPEVKGYW_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.2721557617188	2	570.272021	1138.52949	0.028632	1.6328E-05	-0.14073	-8.0253E-05	-0.1121	-6.3926E-05	570.2718740551363	49.496	0.90842	49.395	49.068	49.977	-0.1008					64	23	4	0	0	0	0.54106	2	4975	4975;4988		83.647	16.153	1	5242500			76711	7950;9954	53494	53583	84586;84587	84586					-0.03423455144616128
SSSPEVKGYW	10	Unmodified	_SSSPEVKGYW_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.27197265625	2	570.272021	1138.52949	0.13845	7.8954E-05	-0.24919	-0.00014211	-0.11074	-6.3152E-05	570.2718213692953	49.807	0.94471	49.527	49.201	50.145	-0.27977					43	24	2	0	0	0	0.58878	2	5014	5002;5014		78.264	23.487	1	5570600			76712	7950;9954	53494	53583	84588;84589	84589					-0.03423455144616128
SSSPEVKGYW	10	Unmodified	_SSSPEVKGYW_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-4|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.2710571289062	2	570.272021	1138.52949	0.29911	0.00017057	-0.84998	-0.00048472	-0.55087	-0.00031415	570.2716902540795	49.602	1.1701	49.422	48.847	50.017	-0.18071					67	30	4	0	0	0	0.811	3	4989	4978;4989;5004		59.931	18.504	1	5208200			76713	7950;9954	53494	53583	84590;84591;84592	84591					-0.03423455144616128
SSSPTFWNY	9	Unmodified	_SSSPTFWNY_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.302490234375	2	544.737814	1087.46108	-0.29447	-0.00016041	-3.192	-0.0017388	-3.4865	-0.0018992	544.7354754955898	63.004	1.4095	62.783	62.547	63.956	-0.22097					38	35	2	0	0	0	0.024427	1	7144	7144		34.173	15.848	1	160750			76714	5913	53495	53584	84593	84593					-0.07915699724480874
SSSPTFWNY	9	Unmodified	_SSSPTFWNY_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3027954101562	2	544.737814	1087.46108	-0.44483	-0.00024232	-2.6622	-0.0014502	-3.107	-0.0016925	544.7356677910992	62.993	1.0597	62.735	62.541	63.601	-0.25824					43	28	3	0	0	0	0.024405	1	7140	7140		35.618	7.736	1	341480			76715	5913	53495	53584	84594	84594					-0.07915699724480874
SSSSAERQW	9	Unmodified	_SSSSAERQW_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.236083984375	2	519.23597	1036.45739	-0.47634	-0.00024733	0.23422	0.00012161	-0.24212	-0.00012572	519.2358848673714	28.241	0.83015	28.072	27.768	28.598	-0.16897					48	19	4	0	0	0	0.64897	1	1615	1615		49.536	0.094497	1	744960			76716	4995	53496	53585	84595	84595					-0.059383694983580426
SSSSAERQW	9	Unmodified	_SSSSAERQW_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.23597	1036.45739	-1.2703	-0.00065957	0.97933	0.0005085	-0.29094	-0.00015106	519.2362821757725	28.489	0.82693	28.243	27.882	28.709	-0.24524	0.17	0.0006225	NaN	49.536	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625170			76717	4995	53496	53585							-0.059383694983580426
SSSSAERQW	9	Unmodified	_SSSSAERQW_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.23597	1036.45739	-0.25765	-0.00013378	-0.18271	-9.4868E-05	-0.44036	-0.00022865	519.235728339521	28.056	0.71141	27.904	27.689	28.401	-0.15195	-0.16911	-0.00058424	NaN	49.536	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	919850			76718	4995	53496	53585							-0.059383694983580426
SSSSKGKK	8	Unmodified	_SSSSKGKK_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.72967529296875	2	404.729792	807.445031	0.1706	6.9045E-05	-1.2737	-0.00051551	-1.1031	-0.00044646	404.7299579093841	104.14	1.1685	103.98	103.17	104.33	-0.16791					41	30	2	0	0	0	1.0574	1	12946	12946		8.8223	0	1	308030			76719	3132	53497	53586	84596	84596					0.03360638829292384
SSSSKGKK	8	Unmodified	_SSSSKGKK_					0	0	0		ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	ENST00000484795.5_1_12:6761826-6762560:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	404.729792	807.445031	0.34654	0.00014025	0.093857	3.7987E-05	0.44039	0.00017824	404.7298322969054	104.15	0.58978	104.02	103.61	104.2	-0.12927	0.023867	6.8647E-05	NaN	8.8223	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129570			76720	3132	53497	53586							0.03360638829292384
SSSTSPHSQ	9	Unmodified	_SSSTSPHSQ_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2253112792969	2	459.201596	916.388638	-0.90201	-0.0004142	-3.6484	-0.0016754	-4.5504	-0.0020896	459.19953331385994	26.163	0.43708	26	25.834	26.271	-0.16331					19	13	2	0	0	0	0.023007	1	1324	1324		66.429	30.811	1	238570	+		76721	25763	53498	53587	84597	84597					-0.07290033798039985
SSTFSSQMQF	10	Unmodified	_SSTFSSQMQF_					0	0	0			REV__ENST00000556631.1_1_14:56139269-56139539:+|nuORF	REV__ENST00000556631.1_1_14:56139269-56139539:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8027954101562	2	575.247689	1148.48082	-0.52746	-0.00030342	2.1329	0.0012269	1.6054	0.00092352	575.2489651639366	53.568	0.39301	53.432	53.171	53.564	-0.13616					15	10	2	0	0	0	0.03519	1	5598	5598		45.972	16.802	1	155900	+		76722	35043	53499	53588	84598	84598					-0.08747691776011379
SSTLASSIL	9	Unmodified	_SSTLASSIL_					0	0	0			REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.7457580566406	2	439.745108	877.475663	-0.093977	-4.1326E-05	1.4355	0.00063124	1.3415	0.00058991	439.74564809215855	34.569	0.90405	34.394	34.168	35.072	-0.17557					40	22	2	0	0	0	0.70186	1	2539	2539		45.952	1.8352	1	1861800	+		76723	30430	53500	53589	84599	84599					0.03202372423686484
SSTLASSIL	9	Unmodified	_SSTLASSIL_					0	0	0			REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	439.745108	877.475663	-0.28654	-0.000126	1.5615	0.00068665	1.2749	0.00056064	439.74573140732366	34.624	0.72334	34.4	34.219	34.942	-0.22412	-0.0031047	-1.229E-05	NaN	45.952	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1243000	+		76724	30430	53500	53589							0.03202372423686484
SSTLASSIL	9	Unmodified	_SSTLASSIL_					0	0	0			REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	439.745108	877.475663	-0.36943	-0.00016246	1.7918	0.00078793	1.4224	0.00062548	439.74574128461404	34.623	0.84211	34.416	34.201	35.043	-0.20696	0.012537	0.00019028	NaN	45.952	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1401000	+		76725	30430	53500	53589							0.03202372423686484
SSTLASSIL	9	Unmodified	_SSTLASSIL_					0	0	0			REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	REV__ENST00000328249.3_2_1:43295744-43296215:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	439.745108	877.475663	-0.093977	-4.1326E-05	1.4355	0.00063124	1.3415	0.00058991	439.74564809215855	34.569	0.90405	34.394	34.168	35.072	-0.17557	-0.009432	-0.00012311	NaN	45.952	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1861800	+		76726	30430	53500	53589							0.03202372423686484
SSTLFHPVL	9	Unmodified	_SSTLFHPVL_					0	0	0		ENST00000301981.7_1_15:99926303-99926429:+|nuORF	ENST00000301981.7_1_15:99926303-99926429:+|nuORF	ENST00000301981.7_1_15:99926303-99926429:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7785339355469	2	500.776742	999.538931	-0.19075	-9.5521E-05	3.4639	0.0017346	3.2731	0.0016391	500.7782692438269	69.171	2.4084	69.186	67.665	70.073	0.015121					126	62	3	0	0	0	0.78069	1	8325	8325		40.573	1.3198	1	2652200			76727	11944	53501	53590	84600	84600					0.03914357931569157
SSTLGKEL	8	Unmodified	_SSTLGKEL_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.7327880859375	2	417.732	833.449448	-0.50263	-0.00020997	2.072	0.00086555	1.5694	0.00065558	417.73281061692586	39.391	1.1446	39.168	38.823	39.967	-0.22311					72	29	4	0	0	0	1.0106	1	3328	3328		35.618	0	1	6558900	+		76728	23527	53502	53591	84601	84601					0.026061032521852212
SSTPCMEKGQL	11	Carbamidomethyl (C),Oxidation (M)	_SSTPC(Carbamidomethyl (C))M(Oxidation (M))EKGQL_	SSTPC(1)MEKGQL	SSTPCM(1)EKGQL	SSTPC(55)MEKGQL	SSTPCM(55)EKGQL	0	1	1			REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	418.5218811035156	3	418.521534	1252.54277	-0.67308	-0.0002817	1.3617	0.00056989	0.6886	0.00028819	418.5219911486058	39.523	0.92398	39.546	39.313	40.237	0.023727					59	25	4	0	0	0	0.84303	1	3356	3356		55.084	13.657	1	2861700	+		76729	32926	53503	53592	84602	84602	435	903			-0.07339708419181079
SSTPCMEKGQL	11	Carbamidomethyl (C),Oxidation (M)	_SSTPC(Carbamidomethyl (C))M(Oxidation (M))EKGQL_					0	1	1			REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	418.521534	1252.54277	0.3871	0.00016201	0.41888	0.00017531	0.80598	0.00033732	418.5216005962834	39.333	0.87419	39.333	39.076	39.951	0	-0.05037	-0.00091154	NaN	55.084	67	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3472700	+		76730	32926	53503	53592			435	903			-0.07339708419181079
SSTPCMEKGQL	11	Carbamidomethyl (C),Oxidation (M)	_SSTPC(Carbamidomethyl (C))M(Oxidation (M))EKGQL_					0	1	1			REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	418.521534	1252.54277	-0.66892	-0.00027996	1.5593	0.00065259	0.89036	0.00037263	418.5220738148119	39.369	0.86055	39.27	38.983	39.844	-0.098755	-0.11275	0.0005203	NaN	55.084	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2705200	+		76731	32926	53503	53592			435	903			-0.07339708419181079
SSTPCMEKGQL	11	Carbamidomethyl (C),Oxidation (M)	_SSTPC(Carbamidomethyl (C))M(Oxidation (M))EKGQL_					0	1	1			REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	REV__ENST00000463194.1_1_7:73663537-73664106:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	418.521534	1252.54277	-0.67308	-0.0002817	1.3617	0.00056989	0.6886	0.00028819	418.5219911486058	39.523	0.92398	39.546	39.313	40.237	0.023727	0.16312	0.0002722	NaN	55.084	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2861700	+		76732	32926	53503	53592			435	903			-0.07339708419181079
SSTPHNVSW	9	Unmodified	_SSTPHNVSW_					0	0	0		nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-6|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5;ENST00000534356.1_1_11:104817674-104819389:-|nuORF;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000137757|P51878-2|CASP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.7353515625	2	507.735606	1013.45666	-0.46538	-0.00023629	0.55777	0.0002832	0.092391	4.691E-05	507.73586336683655	39.909	0.95659	39.678	39.352	40.308	-0.23021					65	24	4	0	0	0	0.48817	1	3379	3379		60.118	0	1	5986400			76733	18316;18660	53504	53593	84603	84603					-0.0495316414737772
SSTTLPFPAL	10	Unmodified	_SSTTLPFPAL_					0	0	0		ENST00000372072.7_1_X:109416808-109416865:+|nuORF	ENST00000372072.7_1_X:109416808-109416865:+|nuORF	ENST00000372072.7_1_X:109416808-109416865:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.81884765625	2	517.281857	1032.54916	-0.4359	-0.00022548	1.2324	0.00063751	0.79652	0.00041203	517.2824729486334	91.566	0.95208	91.553	91.28	92.232	-0.012383					36	22	2	0	0	0	0.03519	1	11586	11586		27.882	6.9353	1	821740			76734	13024	53505	53594	84604	84604					0.034189208661246084
SSVDQPLKI	9	Unmodified	_SSVDQPLKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.779541015625	2	493.779482	985.544411	0.1633	8.0633E-05	-0.3292	-0.00016255	-0.1659	-8.1919E-05	493.77922859335547	49.787	0.70956	49.787	49.437	50.146	0					33	19	2	0	0	0	0.015752	2	5170	5158;5170		158.07	2.261	1	6462400			76735	1617	53506	53595	84605;84606	84606					0.05106036723384477
SSVDQPLKI	9	Unmodified	_SSVDQPLKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.779541015625	2	493.779482	985.544411	0.052927	2.6134E-05	-0.56186	-0.00027744	-0.50893	-0.0002513	493.77931769956535	50.008	0.70278	49.857	49.52	50.223	-0.1512					39	19	3	0	0	0	0.015752	1	5188	5188		158.07	10.032	1	7039100			76736	1617	53506	53595	84607	84607					0.05106036723384477
SSVDQPLKI	9	Unmodified	_SSVDQPLKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7799987792969	2	493.779482	985.544411	-0.76988	-0.00038015	0.6844	0.00033794	-0.085485	-4.2211E-05	493.779708455713	49.711	0.64443	49.786	49.465	50.11	0.074196					32	17	2	0	0	0	0.016758	3	5088	5076;5088;5101		153.04	22.004	1	6779100			76737	1617	53506	53595	84608;84609;84610	84609					0.05106036723384477
SSVDQPLKI	9	Unmodified	_SSVDQPLKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.779482	985.544411	-0.28264	-0.00013956	0.29729	0.00014679	0.014647	7.2323E-06	493.7795962964436	49.524	0.67487	49.424	49.186	49.861	-0.1008	-0.21262	0.00022698	NaN	158.07	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510190			76738	1617	53506	53595							0.05106036723384477
SSVDQPLKI	9	Unmodified	_SSVDQPLKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.779482	985.544411	0.07773	3.8381E-05	0.16011	7.9057E-05	0.23784	0.00011744	493.7794283914072	49.807	0.63443	49.527	49.28	49.914	-0.27977	-0.10939	9.1506E-05	NaN	158.07	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515300			76739	1617	53506	53595							0.05106036723384477
SSVDQPLKI	9	Unmodified	_SSVDQPLKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;CAPZB|p.G234Wfs*14|1|0.32|ENSG00000077549|chr1:19344389-19344390|-/A|frameshift_variant;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.779482	985.544411	0.35737	0.00017646	-0.32229	-0.00015914	0.03508	1.7322E-05	493.7791754263015	49.619	0.63326	49.438	49.268	49.901	-0.18071	-0.19848	-0.00038489	NaN	158.07	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492110			76740	1617	53506	53595							0.05106036723384477
SSVELTAK	8	Unmodified	_SSVELTAK_					0	0	0			REV__ENSG00000242247|ENST00000263245|ARFGAP3	REV__ENSG00000242247|ENST00000263245|ARFGAP3	MSMS	OPSCC_40_ClassI_Rep-3	6	417.732666015625	2	417.732	833.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.291	1	39.065	38.565	39.565	-0.2257								0	0	0	0.78291	1	3300	3300		35.618	0	1		+		76741	28974	53507	53596	84611	84611					0.026061032521852212
SSVIRPPAM	9	Unmodified	_SSVIRPPAM_					0	0	0			REV__ENST00000305123.5_1_2:227662067-227662256:-|nuORF	REV__ENST00000305123.5_1_2:227662067-227662256:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.27752685546875	2	479.262945	956.511337	1.0083	0.00048323	-1.5774	-0.00075601	-0.56917	-0.00027278	479.2628679383975	83.239	0.30177	83.027	82.876	83.178	-0.21159					10	6	2	0	0	0	0.024405	1	10033	10033		20.947	0	1	107410	+		76742	30110	53508	53597	84612	84612					0.03134131399679063
SSVLAPPSNP	10	Unmodified	_SSVLAPPSNP_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2711181640625	2	484.756007	967.497461	-0.94236	-0.00045682	2.3102	0.0011199	1.3678	0.00066305	484.75704805884374	31.168	1.2528	31.168	30.216	31.469	0					47	29	2	0	0	0	0.03519	1	2075	2075		56.434	0	1	183360	+		76743	25042	53509	53598	84613	84613					0.012411771722327103
SSVLTLTN	8	Unmodified	_SSVLTLTN_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;nc|ENSG00000113721|P09619-2|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.7327575683594	2	417.732	833.449448	-0.50263	-0.00020997	2.072	0.00086555	1.5694	0.00065558	417.73281061692586	39.391	1.1446	39.168	38.823	39.967	-0.22311					72	29	4	0	0	0	1.0106	1	3305	3305		35.618	0	1	6558900			76744	3322	53510	53599	84614	84614					0.0260610325219659
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2847900390625	2	464.284734	926.554916	0.038124	1.77E-05	-0.013108	-6.0858E-06	0.025016	1.1615E-05	464.2846543464329	58.463	1.1757	58.278	58.01	59.185	-0.18502					77	28	4	0	0	0	0.091713	4	6444	6407;6419;6431;6444		113.41	46.982	1	10916000			76745	992	53511	53600	84615;84616;84617;84618	84618					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.28411865234375	2	464.284734	926.554916	0.075643	3.512E-05	0.20263	9.4078E-05	0.27827	0.0001292	464.2847062618786	58.47	0.95676	58.28	57.946	58.902	-0.19018					67	23	4	0	0	0	0.016758	4	6431	6408;6418;6431;6444		153.04	68.12	1	10431000			76746	992	53511	53600	84619;84620;84621;84622	84621					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.2843322753906	2	464.284734	926.554916	0.5605	0.00026023	-0.49883	-0.0002316	0.061671	2.8633E-05	464.28443215437136	58.603	1.0953	58.361	58.001	59.096	-0.24165					72	26	4	0	0	0	0.14024	5	6437	6405;6413;6425;6437;6451		101.6	38.255	1	12309000			76747	992	53511	53600	84623;84624;84625;84626;84627	84626					0.0887006416847953
SSVPVLGEPL	10	Unmodified	_SSVPVLGEPL_					0	0	0			REV__ENST00000383745.6_1_3:44666545-44670562:+|nuORF	REV__ENST00000383745.6_1_3:44666545-44670562:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.79547119140625	2	499.281857	996.549162	-0.21596	-0.00010782	1.2492	0.0006237	1.0332	0.00051588	499.28234481454655	56.595	0.80782	56.693	56.283	57.091	0.097897					40	22	2	0	0	0	0.03519	1	6176	6176		49.442	1.7842	1	1356400	+		76748	31556	53512	53601	84628	84628					0.050749208661500234
SSVPVLGEPL	10	Unmodified	_SSVPVLGEPL_					0	0	0			REV__ENST00000383745.6_1_3:44666545-44670562:+|nuORF	REV__ENST00000383745.6_1_3:44666545-44670562:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	499.281857	996.549162	-0.11147	-5.5656E-05	1.4173	0.00070764	1.3058	0.00065199	499.28237959083526	56.825	0.92507	56.825	56.571	57.496	0	0.057189	3.1419E-05	NaN	49.442	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1811500	+		76749	31556	53512	53601							0.050749208661500234
SSVPVLGEPL	10	Unmodified	_SSVPVLGEPL_					0	0	0			REV__ENST00000383745.6_1_3:44666545-44670562:+|nuORF	REV__ENST00000383745.6_1_3:44666545-44670562:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	499.281857	996.549162	-0.28417	-0.00014188	1.4353	0.00071661	1.1511	0.00057473	499.28242309146214	56.95	0.74368	56.786	56.535	57.278	-0.16431	0.018007	4.9364E-05	NaN	49.442	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1601300	+		76750	31556	53512	53601							0.050749208661500234
SSVRTASEL	9	Unmodified	_SSVRTASEL_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2493896484375	2	475.251089	948.487624	-1.1374	-0.00054053	-1.484	-0.00070525	-2.6213	-0.0012458	475.25025461905756	49.338	1.1054	49.413	48.807	49.912	0.074192					79	29	4	0	0	0	0.31037	1	5048	5048		74.255	5.4682	1	5887000			76751	10614	53513	53602	84629	84629					0.011319891668563287
SSVSSERLL	9	Unmodified	_SSVSSERLL_					0	0	0		ENST00000519815.5_1_8:116635922-116681631:-|nuORF	ENST00000519815.5_1_8:116635922-116681631:-|nuORF	ENST00000519815.5_1_8:116635922-116681631:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2654724121094	2	489.266739	976.518924	0.10189	4.9851E-05	-3.6596	-0.0017905	-3.5577	-0.0017407	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.43973	1	6027	6027		63.306	3.0123	1	81379000			76752	15963	53514	53603	84630	84630					0.029725622009550534
SSVTKQVPR	9	Unmodified	_SSVTKQVPR_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2904357910156	2	501.290548	1000.56654	-0.25386	-0.00012726	-0.032713	-1.6399E-05	-0.28657	-0.00014365	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.91321	1	10093	10093		31.53	6.0796	1	2648000			76753	9254	53515	53604	84631	84631					0.06628261191804086
SSVTYNAYIQP	11	Unmodified	_SSVTYNAYIQP_					0	0	0		ENSG00000215148|ENST00000399677|PRSS41;nc|ENSG00000215148|Q7RTY9|PRSS41	ENSG00000215148|ENST00000399677|PRSS41	ENSG00000215148|ENST00000399677|PRSS41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.7616271972656	3	414.871549	1241.59282	0.89526	0.00037142	1.0328	0.00042848	1.9281	0.0007999	415.20674329523484	87.781	0.34935	87.8	87.639	87.988	0.018555					9	8	2	0	0	0	0.024795	1	10996	10996		44.639	8.3218	1	101220			76754	10582	53516	53605	84632	84632					-0.018315144273856276
SSVWLIVSI	9	Unmodified	_SSVWLIVSI_					0	0	0			REV__ENSG00000111300|ENST00000261745|NAA25	REV__ENSG00000111300|ENST00000261745|NAA25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.8142395019531	2	502.294768	1002.57498	0.43627	0.00021914	1.5512	0.00077915	1.9875	0.00099829	502.29600462811015	97.295	0.97509	97.304	96.575	97.55	0.0089111					31	21	2	0	0	0	0.024381	1	12300	12300		21.96	0	1	119570	+		76755	21907	53517	53606	84633	84633					0.07379815108413368
SSWFRSRR	8	Unmodified	_SSWFRSRR_					0	0	0		ENST00000409021.7_1_4:6086667-6087250:-|nuORF	ENST00000409021.7_1_4:6086667-6087250:-|nuORF	ENST00000409021.7_1_4:6086667-6087250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.285400390625	2	541.286131	1080.55771	-0.016107	-8.7182E-06	-1.6833	-0.00091112	-1.6994	-0.00091984	541.2851537360907	22.466	1.1169	22.277	21.816	22.933	-0.18894					54	23	4	0	0	0	0.83003	1	815	815		56.721	0.28726	1	1044700			76756	13762	53518	53607	84634	84634					0.02065332345978277
SSWLKKYH	8	Unmodified	_SSWLKKYH_					0	0	0		ENST00000484229.1_1_1:241695702-241713185:+|nuORF	ENST00000484229.1_1_1:241695702-241713185:+|nuORF	ENST00000484229.1_1_1:241695702-241713185:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7825317382812	2	524.782359	1047.55016	-0.68783	-0.00036096	0.029875	1.5678E-05	-0.65795	-0.00034528	524.7821978316495	28.023	0.55516	28.019	27.731	28.286	-0.0042019					51	13	5	0	0	0	1.0338	1	1583	1583		31.955	1.4512	1	1518700			76757	15298	53519	53608	84635	84635					0.028291800257193245
SSWPPWVGM	9	Unmodified	_SSWPPWVGM_					0	0	0			REV__ENST00000268802.9_1_16:69776052-69776238:-|nuORF	REV__ENST00000268802.9_1_16:69776052-69776238:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2861938476562	2	523.741845	1045.46914	-0.67311	-0.00035253	0.1153	6.0389E-05	-0.5578	-0.00029215	523.7415983288396	34.638	0.31648	34.634	34.491	34.807	-0.0045624					11	7	2	0	0	0	0.024517	1	2584	2584		19.36	5.2229	1	33870	+		76758	29782	53520	53609	84636	84636					-0.051778440086991395
SSYLIKAKQI	10	Unmodified	_SSYLIKAKQI_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8432006835938	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0122	1	11241	11241		44.377	0	1	6382400	+		76759	21294	53521	53610	84637	84637					0.10690847091291289
SSYLIKAKQI	10	Unmodified	_SSYLIKAKQI_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.84326171875	2	575.845156	1149.67576	0.019504	1.1231E-05	-3.8323	-0.0022068	-3.8128	-0.0021956	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0719	2	11226	11226;11288		36.447	0	1	5880000	+		76760	21294	53521	53610	84638;84639	84638					0.10690847091291289
STAIEPVTI	9	Unmodified	_STAIEPVTI_					0	0	0			REV__ENST00000426186.1_3_2:87121966-87144635:+|nuORF	REV__ENST00000426186.1_3_2:87121966-87144635:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	465.7607421875	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.729	1	86.684	86.184	87.184	-0.045105								0	0	0	0.32793	1	10865	10865		66.429	6.1353	1		+		76761	32268	53522	53611	84640	84640					0.03938945457787213
STAKNDKTDD	10	Unmodified	_STAKNDKTDD_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7730712890625	2	547.75165	1093.48875	-0.084414	-4.6238E-05	4.439	0.0024315	4.3546	0.0023852	547.7540858347244	80.896	0.85162	80.658	80.369	81.221	-0.23784					36	20	2	0	0	0	0.03519	1	9731	9731		65.465	24.687	1	523130	+		76762	23585	53523	53612	84641	84641					-0.05425841254896113
STAKSATW	8	Unmodified	_STAKSATW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63-LEPREL1|1|fusion;TP63-LEPREL1|2|fusion;TP63|p.S184L|1|0.16|ENSG00000073282|chr3:189808498-189808498|C/T|missense_variant;chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63;chr3:189808526-189864229|396|14.93|0.28|5.72|+|0|TP63,None|1;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.216796875	2	426.216517	850.418482	-0.17686	-7.5379E-05	0.47236	0.00020133	0.2955	0.00012595	426.2165823998504	27.091	1.0236	26.849	26.529	27.553	-0.24217					71	23	4	0	0	0	0.15467	3	1464	1454;1464;1476		148.04	74.068	1	2652200			76763	1504;18090	53524	53613	84642;84643;84644	84643					-0.012710500620414678
STAKSATW	8	Unmodified	_STAKSATW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63-LEPREL1|1|fusion;TP63-LEPREL1|2|fusion;TP63|p.S184L|1|0.16|ENSG00000073282|chr3:189808498-189808498|C/T|missense_variant;chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63;chr3:189808526-189864229|396|14.93|0.28|5.72|+|0|TP63,None|1;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2169189453125	2	426.216517	850.418482	-0.087944	-3.7483E-05	0.51975	0.00022153	0.43181	0.00018404	426.21663095510746	26.872	1.0922	26.704	26.224	27.317	-0.16816					59	25	3	0	0	0	0.28409	3	1444	1420;1432;1444		118.74	52.94	1	2483200			76764	1504;18090	53524	53613	84645;84646;84647	84647					-0.012710500620414678
STAKSATW	8	Unmodified	_STAKSATW_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63-LEPREL1|1|fusion;TP63-LEPREL1|2|fusion;TP63|p.S184L|1|0.16|ENSG00000073282|chr3:189808498-189808498|C/T|missense_variant;chr3:189808526-189844197|452|11.45|0.16|6.15|+|ENST00000434928|TP63,TP63;chr3:189844412-189864232|456|10.93|0.18|5.96|+|ENST00000434928|TP63,TP63;chr3:189808526-189864229|396|14.93|0.28|5.72|+|0|TP63,None|1;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2166442871094	2	426.216517	850.418482	-0.23889	-0.00010182	0.62647	0.00026701	0.38758	0.00016519	426.21659091132	26.825	0.71865	26.668	26.426	27.145	-0.15664					47	16	4	0	0	0	0.41021	3	1409	1398;1409;1421		95.815	41.039	1	1459600			76765	1504;18090	53524	53613	84648;84649;84650	84649					-0.012710500620414678
STAKSATWTY	10	Unmodified	_STAKSATWTY_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63|p.S184L|1|0.16|ENSG00000073282|chr3:189808498-189808498|C/T|missense_variant;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2718505859375	2	558.272021	1114.52949	-0.26644	-0.00014875	0.17385	9.7053E-05	-0.092596	-5.1694E-05	558.2719558730325	41.219	0.93378	40.991	40.69	41.624	-0.2278					69	23	4	0	0	0	0.24941	1	3611	3611		114.89	32.654	1	1851400			76766	1504;18090	53525	53614	84651	84651					-0.023194551446067635
STAKSATWTY	10	Unmodified	_STAKSATWTY_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;TP63|p.A234Sfs*2|1|0.08|ENSG00000073282|chr3:189864345-189864346|-/A|frameshift_variant;TP63|p.S184L|1|0.16|ENSG00000073282|chr3:189808498-189808498|C/T|missense_variant;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000078900|O15350-10|TP73	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.272021	1114.52949	-0.90015	-0.00050253	0.81067	0.00045257	-0.089482	-4.9955E-05	558.2722609189283	41.296	0.77547	41.066	40.733	41.508	-0.23029	0.037458	0.00047554	NaN	114.89	58	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1932700			76767	1504;18090	53525	53614							-0.023194551446067635
STALIKDS	8	Unmodified	_STALIKDS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.7325439453125	2	417.732	833.449448	-0.50263	-0.00020997	2.072	0.00086555	1.5694	0.00065558	417.73281061692586	39.391	1.1446	39.168	38.823	39.967	-0.22311					72	29	4	0	0	0	0.99042	1	3316	3316		38.806	0	1	6558900	+		76768	27387	53526	53615	84652	84652					0.0260610325219659
STAPPEGEPEP	11	Unmodified	_STAPPEGEPEP_					0	0	0			REV__nc|ENSG00000101204|P43681-2|CHRNA4	REV__nc|ENSG00000101204|P43681-2|CHRNA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.289306640625	2	555.751118	1109.48768	-0.52601	-0.00029233	3.6703	0.0020398	3.1443	0.0017474	555.7531976333978	67.378	0.63853	67.089	66.791	67.429	-0.28834					24	15	2	0	0	0	0.024762	1	8037	8037		45.972	3.5761	1	268220	+		76769	21200	53527	53616	84653	84653					-0.06268055623809232
STAPQLSQVT	10	Unmodified	_STAPQLSQVT_					0	0	0			REV__ENST00000463680.5_1_9:3898613-3937138:-|nuORF	REV__ENST00000463680.5_1_9:3898613-3937138:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.265625	2	516.272021	1030.52949	-0.77638	-0.00040083	-0.9323	-0.00048132	-1.7087	-0.00088215	516.2725129853234	57.073	0.41434	57.168	56.978	57.392	0.095306					17	10	2	0	0	0	0.03519	1	6314	6314		60.118	7.1816	1	195030	+		76770	21660	53528	53617	84654	84654					0.01544544855391905
STARPTESFQ	10	Unmodified	_STARPTESFQ_					0	0	0			REV__ENST00000433360.5_2_7:94791243-94827692:+|nuORF	REV__ENST00000433360.5_2_7:94791243-94827692:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2677001953125	2	562.272552	1122.53055	1.689	0.00094969	-1.2579	-0.00070729	0.43111	0.0002424	562.2716535782836	23.802	0.73981	23.611	23.321	24.061	-0.19117					26	16	2	0	0	0	0.03519	1	923	923		49.536	15.364	1	510970	+		76771	32401	53529	53618	84655	84655					-0.025812407757030087
STATRYLLRK	10	Unmodified	_STATRYLLRK_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7;nc|ENSG00000186862|Q9H5P4-2|PDZD7;nc|ENSG00000186862|Q9H5P4-1|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.15509033203125	3	403.575178	1207.70371	0.76667	0.00030941	2.8931	0.0011676	3.6598	0.001477	403.57633458768015	33.327	0.47572	33.127	32.771	33.247	-0.20019					18	11	2	0	0	0	0.03519	1	2315	2315		28.577	0	1	87481			76772	9581	53530	53619	84656	84656					0.10816170071348097
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7797241210938	2	529.779482	1057.54441	-0.2369	-0.0001255	-0.21683	-0.00011487	-0.45373	-0.00024037	529.7793908407918	63.612	1.728	63.385	62.769	64.497	-0.22773					116	43	4	0	0	0	0.26797	2	7196	7184;7196		79.939	3.1607	1	19982000			76773	10129	53531	53620	84657;84658	84658					0.017940367234132282
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7793579101562	2	529.779482	1057.54441	-0.48699	-0.000258	-0.027667	-1.4657E-05	-0.51466	-0.00027266	529.7794735641246	63.592	1.6886	63.399	62.822	64.51	-0.19243					128	42	4	0	0	0	0.40179	2	7192	7192;7228		65.803	10.299	1	21021000			76774	10129	53531	53620	84659;84660	84659					0.017940367234132282
STDHIPILY	9	Unmodified	_STDHIPILY_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7787475585938	2	529.779482	1057.54441	0.34595	0.00018328	-0.86627	-0.00045893	-0.52032	-0.00027565	529.7790256497054	63.692	1.8732	63.434	62.706	64.579	-0.25824					137	47	4	0	0	0	0.40179	2	7174	7174;7222		65.803	15.779	1	19432000			76775	10129	53531	53620	84661;84662	84661					0.017940367234132282
STDIGALMY	9	Oxidation (M)	_STDIGALM(Oxidation (M))Y_		STDIGALM(1)Y		STDIGALM(140)Y	0	0	1		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.72833251953125	2	493.7286	985.442648	-0.38316	-0.00018918	0.26127	0.000129	-0.12189	-6.0179E-05	493.72859503800373	63.473	0.9752	63.245	62.933	63.908	-0.22773					57	24	3	0	0	0	0.033883	2	7162	7162;7172		138.48	75.173	1	3453200			76776	9902	53532	53621	84663;84664	84663		412			-0.05065577690686496
STDIGALMY	9	Oxidation (M)	_STDIGALM(Oxidation (M))Y_		STDIGALM(1)Y		STDIGALM(140)Y	0	0	1		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7287902832031	2	493.7286	985.442648	-0.056656	-2.7973E-05	-0.11387	-5.6221E-05	-0.17053	-8.4194E-05	493.7283696676987	63.44	1.2869	63.248	62.947	64.234	-0.19243					78	32	4	0	0	0	0.033883	3	7166	7166;7178;7189		138.48	56.175	1	3797900			76777	9902	53532	53621	84665;84666;84667	84665		412			-0.05065577690686496
STDIGALMY	9	Oxidation (M)	_STDIGALM(Oxidation (M))Y_		STDIGALM(1)Y		STDIGALM(110)Y	0	0	1		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.728515625	2	493.7286	985.442648	0.42358	0.00020913	-0.60506	-0.00029873	-0.18148	-8.96E-05	493.7281413200825	63.574	1.1117	63.316	63	64.112	-0.25824					69	28	4	0	0	0	0.10076	2	7176	7165;7176		110.34	41.853	1	4054000			76778	9902	53532	53621	84668;84669	84669		412			-0.05065577690686496
STDILFGQP	9	Unmodified	_STDILFGQP_					0	0	0			REV__ENSG00000157315|ENST00000288025|TMED6	REV__ENSG00000157315|ENST00000288025|TMED6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2375793457031	2	489.250557	976.486562	-0.25391	-0.00012423	3.8776	0.0018971	3.6237	0.0017729	489.25290772897665	35.295	0.19743	35.108	35.023	35.22	-0.18675					8	4	3	0	0	0	0.024506	1	2644	2644		23.042	0	1	44713	+		76779	25123	53533	53622	84670	84670					-0.00262225202038735
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	612.7738037109375	2	612.774593	1223.53463	-0.61339	-0.00037587	0.33628	0.00020606	-0.27711	-0.00016981	612.7747820817855	51.002	0.60628	50.891	50.563	51.169	-0.11163					52	15	4	0	0	0	0.13984	4	5203	5203;5213;5225;5239		128.6	51.519	1	8530500			76780	7795	53534	53623	84671;84672;84673;84674	84671					-0.06819196072660816
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	612.7748413085938	2	612.774593	1223.53463	-0.36844	-0.00022577	0.015373	9.42E-06	-0.35306	-0.00021635	612.7745410128636	51.266	0.64841	50.989	50.665	51.313	-0.27643					57	16	4	0	0	0	0.082298	4	5254	5231;5242;5254;5267		140.11	60.661	1	7684800			76781	7795	53534	53623	84675;84676;84677;84678	84677					-0.06819196072660816
STDKAEYTFY	10	Unmodified	_STDKAEYTFY_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	612.7754516601562	2	612.774593	1223.53463	0.50339	0.00030847	-0.81447	-0.00049909	-0.31108	-0.00019062	612.7740127999975	51.052	0.57064	50.871	50.572	51.143	-0.18071					54	14	5	0	0	0	0.1169	4	5212	5202;5212;5224;5237		131.62	67.63	1	7525500			76782	7795	53534	53623	84679;84680;84681;84682	84680					-0.06819196072660816
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	626.2989501953125	2	626.298236	1250.58192	-0.31589	-0.00019784	0.21948	0.00013746	-0.096408	-6.038E-05	626.2983236040234	45.49	0.69036	45.39	45.084	45.775	-0.099449					52	19	4	0	0	0	0.41983	1	4328	4328		96.665	34.558	1	2093800			76783	7784	53535	53624	84683	84683					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.29833984375	2	626.298236	1250.58192	-0.93064	-0.00058286	0.72471	0.00045388	-0.20593	-0.00012897	626.2986544793885	45.681	0.59595	45.428	45.19	45.786	-0.25252					52	16	4	0	0	0	0.2497	1	4345	4345		114.86	32.618	1	2150500			76784	7784	53535	53624	84684	84684					-0.03334916801645704
STDKFKTDFY	10	Unmodified	_STDKFKTDFY_					0	0	0		ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.2980346679688	2	626.298236	1250.58192	-0.71093	-0.00044526	0.51266	0.00032108	-0.19827	-0.00012418	626.2985487663295	45.605	0.51283	45.403	45.194	45.706	-0.20226					45	14	4	0	0	0	0.047364	1	4333	4333		148.69	66.45	1	2208700			76785	7784	53535	53624	84685	84685					-0.03334916801645704
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.2399291992188	2	553.237844	1104.46113	-0.1932	-0.00010689	0.53898	0.00029819	0.34578	0.0001913	553.2379388573884	58.162	0.5819	57.984	57.859	58.441	-0.17775					28	13	3	0	0	0	0.15366	2	6384	6384;6396		98.629	22.612	1	1501700			76786	9939	53536	53625	84686;84687	84686					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.2384643554688	2	553.237844	1104.46113	-0.096552	-5.3416E-05	0.93378	0.0005166	0.83723	0.00046319	553.238156269481	58.147	0.7031	57.957	57.674	58.377	-0.19018					27	17	2	0	0	0	0.10174	3	6386	6373;6386;6398		110.12	35.077	1	1927200			76787	9939	53536	53625	84688;84689;84690	84689					-0.08691744515135724
STDLQDYTY	9	Unmodified	_STDLQDYTY_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50270412-50303272:+|nuORF;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.2371215820312	2	553.237844	1104.46113	0.14085	7.7926E-05	0.3902	0.00021588	0.53106	0.0002938	553.2378993119811	58.246	1.0823	58.012	57.78	58.862	-0.23363					40	26	4	0	0	0	0.2101	3	6383	6373;6383;6398		87.696	29.885	1	2194700			76788	9939	53536	53625	84691;84692;84693	84692					-0.08691744515135724
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.7344970703125	2	516.735271	1031.45599	-0.60009	-0.00031009	-0.53986	-0.00027897	-1.1399	-0.00058905	516.7349628304721	43.656	0.94249	43.551	43.261	44.203	-0.10468					74	25	5	0	0	0	0.013492	4	4036	4004;4013;4024;4036		177.71	100.86	1	9467300			76789	9887	53537	53626	84694;84695;84696;84697	84697					-0.058480035870843494
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7345581054688	2	516.735271	1031.45599	-0.80086	-0.00041383	-0.48669	-0.00025149	-1.2875	-0.00066532	516.7350032698608	43.819	0.91051	43.575	43.275	44.186	-0.2444					67	24	4	0	0	0	0.013492	4	4029	4021;4029;4041;4054		183.89	94.957	1	9676400			76790	9887	53537	53626	84698;84699;84700;84701	84699					-0.058480035870843494
STDPEALHY	9	Unmodified	_STDPEALHY_					0	0	0		nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF;ENST00000513842.1_1_4:7765494-7800689:-|nuORF	nc|ENSG00000196526|Q8N556|AFAP1	nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.7349853515625	2	516.735271	1031.45599	-0.87401	-0.00045163	-0.45943	-0.00023741	-1.3334	-0.00068904	516.7349777351675	43.842	0.89639	43.622	43.316	44.212	-0.21939					67	24	4	0	0	0	0.014907	4	4041	4018;4030;4041;4054		162.31	87.262	1	9663500			76791	9887	53537	53626	84702;84703;84704;84705	84704					-0.058480035870843494
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2356262207031	2	497.235439	992.456324	-0.55978	-0.00027834	0.28528	0.00014185	-0.27451	-0.00013649	497.2356394251878	30.932	0.90666	30.691	30.166	31.073	-0.24109					59	21	5	0	0	0	0.013065	4	2003	1991;2003;2014;2027		171.53	97.557	1	9601100			76792	2471	53538	53627	84706;84707;84708;84709	84707					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.23541259765625	2	497.235439	992.456324	-0.5457	-0.00027134	0.23892	0.0001188	-0.30679	-0.00015254	497.2356323726474	30.82	1.051	30.642	30.164	31.215	-0.17818					79	25	6	0	0	0	0.015752	4	1995	1971;1983;1995;2007		158.07	84.551	1	9125100			76793	2471	53538	53627	84710;84711;84712;84713	84712					-0.040205838672363825
STDPRPASY	9	Unmodified	_STDPRPASY_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.23529052734375	2	497.235439	992.456324	-0.30223	-0.00015028	0.11141	5.5398E-05	-0.19081	-9.4879E-05	497.23563533326336	30.788	1.012	30.636	30.257	31.269	-0.15231					61	24	4	0	0	0	0.03201	4	1960	1951;1960;1971;1983		139.97	74.167	1	9446700			76794	2471	53538	53627	84714;84715;84716;84717	84715					-0.040205838672363825
STDPSHVL	8	Unmodified	_STDPSHVL_					0	0	0			REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	REV__nc|ENSG00000162641|Q5T1N1-4|AKNAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2559509277344	2	428.213975	854.413397	-0.9218	-0.00039473	0.88241	0.00037786	-0.039396	-1.687E-05	428.2141814926929	44.624	0.55763	44.624	44.485	45.043	0					18	15	2	0	0	0	0.027866	1	4255	4255		42.474	8.9589	1	134820	+		76795	36845	53539	53628	84718	84718					-0.01963353924668354
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7740478515625	2	533.774396	1065.53424	-0.45516	-0.00024295	-0.64403	-0.00034377	-1.0992	-0.00058672	533.7740884345204	47.6	1.9114	47.502	47.121	49.033	-0.097549					153	51	6	0	0	0	0.00020391	8	4690	4644;4654;4666;4678;4690;4702;4714;4727		195.05	101.85	1	86094000			76796	3353	53540	53629	84719;84720;84721;84722;84723;84724;84725;84726	84723					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.7741088867188	2	533.774396	1065.53424	-0.83849	-0.00044757	-0.33667	-0.0001797	-1.1752	-0.00062727	533.774272866796	47.922	1.5595	47.646	47.305	48.864	-0.27598					144	42	5	0	0	0	0.01976	8	4731	4675;4683;4695;4707;4719;4731;4743;4756		163.15	83.707	1	89559000			76797	3353	53540	53629	84727;84728;84729;84730;84731;84732;84733;84734	84732					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7738037109375	2	533.774396	1065.53424	-0.1717	-9.1647E-05	-1.0426	-0.00055651	-1.2143	-0.00064815	533.7738658602892	47.731	1.7948	47.544	47.239	49.034	-0.18684					151	48	6	0	0	0	0.0081025	8	4701	4654;4665;4677;4689;4701;4713;4727;4740		172.25	94.364	1	90657000			76798	3353	53540	53629	84735;84736;84737;84738;84739;84740;84741;84742	84739					0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.774396	1065.53424	-0.69229	-0.00036952	-4.0267	-0.0021493	-4.719	-0.0025189	533.7720625628489	47.279	0.35324	47.279	47.111	47.464	0	-0.17147	-0.0035247	NaN	195.05	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176380			76799	3353	53540	53629							0.004094289981594557
STDPSVLGKY	10	Unmodified	_STDPSVLGKY_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.774396	1065.53424	-1.1712	-0.00062513	-2.0564	-0.0010976	-3.2275	-0.0017228	533.7729733736104	47.22	0.39153	47.279	47.032	47.423	0.059093	-0.17078	-0.0014213	NaN	195.05	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158310			76800	3353	53540	53629							0.004094289981594557
STDSFTGDNK	10	Unmodified	_STDSFTGDNK_					0	0	0			REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	REV__nc|ENSG00000107560|Q7L804-2|RAB11FIP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7554321289062	2	536.233093	1070.45163	-1.1108	-0.00059567	-1.4636	-0.00078484	-2.5745	-0.0013805	536.7344099209237	38.375	0.10123	38.196	38.136	38.237	-0.17929					4	2	2	0	0	0	0.03519	1	3172	3172		60.118	3.3972	1	69539	+		76801	21672	53541	53630	84743	84743					-0.08077512800650766
STDSPIIIEP	10	Unmodified	_STDSPIIIEP_					0	0	0		ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7554321289062	2	536.282054	1070.54956	-1.12	-0.00060063	-3.2722	-0.0017548	-4.3922	-0.0023555	536.7824204434531	38.389	0.13486	38.21	38.136	38.27	-0.17929					5	3	2	0	0	0	0.03519	1	3172	3172		58.782	0	1	38656			76802	11032	53542	53631	84744	84744					0.017102957953511577
STDVGKRMY	9	Oxidation (M)	_STDVGKRM(Oxidation (M))Y_		STDVGKRM(1)Y		STDVGKRM(57)Y	0	0	1		ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP	ENSG00000153815|ENST00000537098|CMIP	ENSG00000153815|ENST00000537098|CMIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7545776367188	2	536.758223	1071.50189	-1.0224	-0.00054878	-2.8917	-0.0015522	-3.9141	-0.0021009	536.7565093630486	38.304	1.6224	38.125	37.443	39.066	-0.17929					133	45	6	0	0	0	0.53979	1	3180	3180		56.721	10.749	1	23642000			76803	6359	53543	53632	84745	84745		266			-0.030996816764854884
STDWHVVNY	9	Unmodified	_STDWHVVNY_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;DOCK11|p.I398Yfs*7|1|0.31|ENSG00000147251|chrX:118573814-118573815|-/T|frameshift_variant	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.7550659179688	2	560.756538	1119.49852	-1.0277	-0.00057628	1.1999	0.00067287	0.17225	9.6592E-05	560.7570424645332	55.678	0.83368	55.522	55.178	56.011	-0.15655					48	22	4	0	0	0	0.31037	1	6002	6002		74.255	22.92	1	3010700			76804	5951	53544	53633	84746	84746					-0.05644608458851508
STDWHVVNY	9	Unmodified	_STDWHVVNY_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;DOCK11|p.I398Yfs*7|1|0.31|ENSG00000147251|chrX:118573814-118573815|-/T|frameshift_variant	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7538452148438	2	560.756538	1119.49852	-0.065341	-3.664E-05	0.10002	5.6089E-05	0.034682	1.9448E-05	560.7563867365876	55.761	0.76085	55.545	55.237	55.998	-0.21607					48	20	4	0	0	0	0.53979	2	5999	5999;6012		56.721	7.119	1	3032700			76805	5951	53544	53633	84747;84748	84747					-0.05644608458851508
STEGKFLYH	9	Unmodified	_STEGKFLYH_					0	0	0		ENST00000459797.1_1_1:47148918-47150223:-|nuORF	ENST00000459797.1_1_1:47148918-47150223:-|nuORF	ENST00000459797.1_1_1:47148918-47150223:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7926025390625	2	541.269281	1080.52401	-0.38849	-0.00021028	-0.085546	-4.6303E-05	-0.47403	-0.00025658	541.2690275911335	84.36	0.90187	84.222	83.588	84.49	-0.13789					39	20	3	0	0	0	0.024292	1	10179	10179		58.782	14.665	1	260930			76806	14636	53545	53634	84749	84749					-0.01303133936426093
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.2507934570312	2	517.251089	1032.48762	-0.12189	-6.3045E-05	-0.052176	-2.6988E-05	-0.17406	-9.0033E-05	517.2508104163603	46.649	1.3544	46.552	45.923	47.278	-0.096649					85	36	4	0	0	0	0.021872	3	4508	4508;4518;4531		148.04	60.556	1	6654600			76807	5457	53546	53635	84750;84751;84752	84750					-0.0273201083314234
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2507934570312	2	517.251089	1032.48762	0.15206	7.8654E-05	-0.72326	-0.00037411	-0.5712	-0.00029545	517.2506392558945	46.943	1.0834	46.674	46.415	47.498	-0.26939					67	29	3	0	0	0	0.013094	4	4531	4531;4541;4553;4573		201.49	97.431	1	7626200			76808	5457	53546	53635	84753;84754;84755;84756	84753					-0.0273201083314234
STELNHLGY	9	Unmodified	_STELNHLGY_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2501831054688	2	517.251089	1032.48762	-0.39537	-0.0002045	-0.032228	-1.667E-05	-0.42759	-0.00022117	517.2509367709695	46.758	1.2169	46.564	46.165	47.382	-0.19387					80	33	4	0	0	0	0.013333	4	4522	4513;4522;4533;4548		176.41	86.041	1	8146500			76809	5457	53546	53635	84757;84758;84759;84760	84758					-0.0273201083314234
STELVDSAHSP	11	Unmodified	_STELVDSAHSP_					0	0	0			REV__ENST00000572686.1_1_17:47677742-47677928:-|nuORF	REV__ENST00000572686.1_1_17:47677742-47677928:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.7691040039062	2	571.769842	1141.52513	-0.14116	-8.0709E-05	2.8983	0.0016571	2.7571	0.0015764	571.7716537996158	83.177	0.17108	83.038	82.91	83.081	-0.13861					5	3	2	0	0	0	0.024747	1	10022	10022		39.253	3.6345	1	17706	+		76810	35427	53547	53636	84761	84761					-0.039969643581798664
STEQFQEYY	9	Unmodified	_STEQFQEYY_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.755615234375	2	597.751118	1193.48768	-0.081879	-4.8943E-05	0.64248	0.00038404	0.5606	0.0003351	597.7513639662446	59.414	0.45067	59.221	58.892	59.343	-0.19315					33	10	4	0	0	0	0.2508	1	6576	6576		82.241	8.2658	1	1864000			76811	1789	53548	53637	84762	84762					-0.10132055623785163
STEQFQEYY	9	Unmodified	_STEQFQEYY_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	597.751118	1193.48768	-0.12936	-7.7328E-05	0.44743	0.00026745	0.31806	0.00019012	597.7512587998355	59.256	0.48519	59.074	58.791	59.276	-0.18134	-0.08122	4.61E-05	NaN	82.241	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1945700			76812	1789	53548	53637							-0.10132055623785163
STEQFQEYY	9	Unmodified	_STEQFQEYY_					0	0	0		ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47;nc|ENSG00000085433|O94967-2|WDR47	ENSG00000085433|ENST00000369962|WDR47	ENSG00000085433|ENST00000369962|WDR47	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	597.751118	1193.48768	0.15454	9.2375E-05	0.083513	4.992E-05	0.23805	0.00014229	597.7509708619848	59.42	0.44711	59.172	58.888	59.335	-0.24842	0.016032	-0.00038896	NaN	82.241	34	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1706800			76813	1789	53548	53637							-0.10132055623785163
STEQIPILY	9	Unmodified	_STEQIPILY_					0	0	0		GFPT2|p.P411Tfs*6|1|0.12|ENSG00000131459|chr5:180316383-180316384|-/T|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2	GFPT2|p.P411Tfs*6|1|0.12|ENSG00000131459|chr5:180316383-180316384|-/T|frameshift_variant	GFPT2|p.P411Tfs*6|1|0.12|ENSG00000131459|chr5:180316383-180316384|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2868041992188	2	532.28714	1062.55973	0.24185	0.00012874	0.21362	0.00011371	0.45548	0.00024245	532.2869500574736	77.253	0.69685	77.011	76.623	77.32	-0.24232					39	17	3	0	0	0	0.50848	1	9197	9197		58.782	2.0609	1	606090			76814	4525	53549	53638	84763	84763					0.03094903520582193
STFDSPAHW	9	Unmodified	_STFDSPAHW_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2293701171875	2	524.230156	1046.44576	-1.1545	-0.00060521	0.61638	0.00032313	-0.53809	-0.00028208	524.230499700398	54.029	1.234	53.892	53.462	54.696	-0.13617					111	36	4	0	0	0	0.10076	2	5678	5678;5687		110.34	36.082	1	22934000			76815	5898	53550	53639	84764;84765	84764					-0.07560566521692635
STFDSPAHW	9	Unmodified	_STFDSPAHW_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2302856445312	2	524.230156	1046.44576	-0.045781	-2.4E-05	-0.48055	-0.00025192	-0.52633	-0.00027592	524.2299032653377	54.177	1.1744	53.932	53.559	54.733	-0.2453					116	35	4	0	0	0	0.10076	2	5700	5700;5711		110.34	43.908	1	27369000			76816	5898	53550	53639	84766;84767	84766					-0.07560566521692635
STFDSPAHW	9	Unmodified	_STFDSPAHW_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2299194335938	2	524.230156	1046.44576	0.031604	1.6568E-05	-0.62779	-0.00032911	-0.59619	-0.00031254	524.2298351738632	54.083	1.3067	53.886	53.387	54.694	-0.19739					114	37	4	0	0	0	0.040175	1	5689	5689		133.47	51.164	1	22805000			76817	5898	53550	53639	84768	84768					-0.07560566521692635
STGDLARQLA	10	Unmodified	_STGDLARQLA_					0	0	0			REV__nc|ENSG00000160908|Q53GI3-3|ZNF394	REV__nc|ENSG00000160908|Q53GI3-3|ZNF394	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2713012695312	2	516.277638	1030.54072	-0.44284	-0.00022863	-1.8304	-0.000945	-2.2732	-0.0011736	516.276648835426	28.645	0.80995	28.476	28.131	28.941	-0.16897					31	18	2	0	0	0	0.03519	1	1643	1643		26.693	0	1	165230	+		76818	25359	53551	53640	84769	84769					0.02667366949526695
STGEGTTKPV	10	Unmodified	_STGEGTTKPV_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2683410644531	2	488.750921	975.48729	-0.34472	-0.00016848	0.4853	0.00023719	0.14058	6.8707E-05	488.75085089638355	47.84	0.7851	47.687	47.441	48.227	-0.15301					34	23	3	0	0	0	0.03519	1	4774	4774		51.193	11.94	1	671700	+		76819	20560	53552	53641	84770	84770					-0.0014343055299832486
STGEPLELPD	10	Unmodified	_STGEPLELPD_					0	0	0			REV__nc|ENSG00000172733|Q9UJV8-2|PURG	REV__nc|ENSG00000172733|Q9UJV8-2|PURG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	529.256037	1056.49752	-0.84336	-0.00044636	-1.8139	-0.00096004	-2.6573	-0.0014064	529.2549820278002	50.819	1.5915	50.9	50.477	52.068	0.08099					93	44	3	0	0	0	0.03519	1	5454	5454		40.778	0	1	632080	+		76820	26702	53553	53642	84771	84771					-0.028468676184274955
STGFFSQVI	9	Unmodified	_STGFFSQVI_					0	0	0			REV__ENST00000500538.6_1_4:68586658-68594368:+|nuORF	REV__ENST00000500538.6_1_4:68586658-68594368:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2528991699219	2	493.2531	984.491647	-0.99226	-0.00048943	2.6301	0.0012973	1.6378	0.00080787	493.2535358475389	55.369	1.3735	55.467	54.558	55.931	0.098015					72	37	4	0	0	0	0.29158	1	6032	6032		76.774	0	1	2595200	+		76821	33907	53554	53643	84772	84772					-0.0012192133942789951
STGGRSGISGR	11	Unmodified	_STGGRSGISGR_					0	0	0		nc|ENSG00000149571|Q8IZU9-2|KIRREL3	nc|ENSG00000149571|Q8IZU9-2|KIRREL3	nc|ENSG00000149571|Q8IZU9-2|KIRREL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.768310546875	2	517.770511	1033.52647	-0.31164	-0.00016136	-2.3311	-0.001207	-2.6427	-0.0013683	517.7695828487074	39.273	0.90896	39.273	38.97	39.879	0					69	25	6	0	0	0	0.76305	1	3352	3352		59.931	13.959	1	7075600			76822	18377	53555	53644	84773	84773					0.01104714521261485
STGHAIPLLV	10	Unmodified	_STGHAIPLLV_					0	0	0		nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-17|MUC4	nc|ENSG00000145113|Q99102-3|MUC4	nc|ENSG00000145113|Q99102-3|MUC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.296630859375	2	504.297842	1006.58113	-0.10118	-5.1026E-05	0.061054	3.0789E-05	-0.040128	-2.0237E-05	504.2977977908085	61.853	0.90803	61.639	61.375	62.283	-0.21375					76	22	4	0	0	0	1.0004	1	6912	6912		45.952	1.4209	1	5668100			76823	5792	53556	53645	84774	84774					0.07810333339944009
STGLLFTRL	9	Unmodified	_STGLLFTRL_					0	0	0		ENST00000376609.1_1_17:47923566-47924646:+|nuORF	ENST00000376609.1_1_17:47923566-47924646:+|nuORF	ENST00000376609.1_1_17:47923566-47924646:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.29742431640625	2	504.297842	1006.58113	-0.31658	-0.00015965	-1.8243	-0.00091999	-2.1409	-0.0010796	504.29633338861873	61.589	1.2254	61.589	60.996	62.222	0					90	32	5	0	0	0	0.6238	1	7174	7174		51.193	5.2407	1	15843000			76824	13184	53557	53646	84775	84775					0.0781033333993264
STGNPPPPQ	9	Unmodified	_STGNPPPPQ_					0	0	0		CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	446.7490539550781	2	447.719424	893.424296	-0.10917	-4.8879E-05	0.26787	0.00011993	0.15869	7.105E-05	447.7194511820102	33.108	0.68664	32.877	32.586	33.273	-0.23107					31	16	3	0	0	0	0.024323	1	2372	2372		14.865	5.1592	1	237570		+	76825	487	53558	53647	84776	84776					-0.02667951550381531
STGPHITL	8	Unmodified	_STGPHITL_					0	0	0			REV__nc|ENSG00000164347|Q969S9-2|GFM2	REV__nc|ENSG00000164347|Q969S9-2|GFM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7430114746094	2	413.226885	824.439217	0.011325	4.6797E-06	0.76352	0.00031551	0.77484	0.00032019	413.2270232645538	36.906	1.1287	36.945	36.478	37.606	0.038044					57	29	4	0	0	0	0.027866	1	2984	2984		1.0954	0	1	1342100	+		76826	25745	53559	53648	84777	84777					0.019975403176204054
STGRPKPLA	9	Unmodified	_STGRPKPLA_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.7773132324219	2	463.774534	925.534515	-0.68728	-0.00031874	1.8815	0.00087258	1.1942	0.00055384	463.77454884767565	49.115	0.95898	49.19	48.772	49.731	0.074192					81	25	4	0	0	0	0.67687	1	5010	5010		47.657	0	1	10178000			76827	13307	53560	53649	84778	84778					0.06876893508660942
STGRPLVIL	9	Unmodified	_STGRPLVIL_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.29840087890625	2	478.300384	954.586216	0.0066107	3.1619E-06	0.05799	2.7737E-05	0.064601	3.0899E-05	478.3003428461758	72.83	0.97113	72.565	71.881	72.852	-0.26479					32	22	2	0	0	0	0.024477	1	8541	8541		14.865	5.1592	1	222140			76828	3583	53561	53650	84779	84779					0.10710637202555517
STGSPLHLL	9	Unmodified	_STGSPLHLL_					0	0	0			REV__ENSG00000196260|ENST00000359086|SFTA2	REV__ENSG00000196260|ENST00000359086|SFTA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.7720031738281	2	462.761092	923.507631	1.1981	0.00055442	0.33503	0.00015504	1.5331	0.00070946	462.7602431849714	98.257	0.38542	98.133	97.988	98.373	-0.12413					11	8	2	0	0	0	0.024535	1	12175	12175		18.324	6.1176	1	44180	+		76829	28154	53562	53651	84780	84780					0.042817848974891604
STGTEPPGE	9	Unmodified	_STGTEPPGE_					0	0	0		ENST00000560377.5_1_15:77317886-77324926:+|nuORF;nc|ENSG00000140368|O43586-2|PSTPIP1	ENST00000560377.5_1_15:77317886-77324926:+|nuORF	ENST00000560377.5_1_15:77317886-77324926:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.7714538574219	2	437.693072	873.371591	1.089	0.00047664	0.26287	0.00011506	1.3518	0.00059169	437.6931422012091	22.694	0.36962	22.492	22.33	22.7	-0.20199					9	7	2	0	0	0	0.024405	1	817	817		14.865	0	1	23921			76830	16799	53563	53652	84781	84781					-0.07015954403834712
STGTLSKK	8	Unmodified	_STGTLSKK_					0	0	0		ENST00000218200.12_1_X:147031414-147031534:+|nuORF	ENST00000218200.12_1_X:147031414-147031534:+|nuORF	ENST00000218200.12_1_X:147031414-147031534:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	411.24066162109375	2	411.239993	820.465432	2.3727	0.00097575	-0.12701	-5.223E-05	2.2457	0.00092352	411.2397489364451	18.986	0.64213	18.986	18.724	19.366	0					29	12	3	0	0	0	1.0106	1	360	360		35.618	0	1	281650			76831	11166	53564	53653	84782	84782					0.048018094890949214
STGTRTSTE	9	Unmodified	_STGTRTSTE_					0	0	0			REV__ENSG00000240720|ENST00000458448|LRRD1	REV__ENSG00000240720|ENST00000458448|LRRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7503967285156	2	470.222528	938.430503	-0.49742	-0.0002339	-1.7332	-0.00081501	-2.2307	-0.0010489	470.22165532207384	31.211	1.5737	31.211	30.137	31.71	0					51	37	2	0	0	0	0.024447	1	1952	1952		13.454	0	1	98886	+		76832	28961	53565	53654	84783	84783					-0.04117478109515105
STGVVRLATT	10	Unmodified	_STGVVRLATT_					0	0	0			REV__ENSG00000103044|ENST00000569188|HAS3	REV__ENSG00000103044|ENST00000569188|HAS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2762451171875	2	502.790381	1003.56621	-1.0545	-0.00053022	3.9995	0.0020109	2.945	0.0014807	502.7923493827935	65	0.52412	64.798	64.539	65.063	-0.20254					27	12	3	0	0	0	0.03519	1	7412	7412		49.536	3.5638	1	612830	+		76833	21349	53566	53655	84784	84784					0.06456841471947428
STHLHLPLS	9	Unmodified	_STHLHLPLS_					0	0	0			REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF	REV__ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.22308349609375	2	502.779816	1003.54508	-0.73652	-0.00037031	0.20808	0.00010462	-0.52844	-0.00026569	502.77976214524574	46.813	0.72113	46.619	46.202	46.923	-0.19387					31	20	2	0	0	0	0.024457	1	4549	4549		15.642	0	1	235550	+		76834	35663	53567	53656	84785	84785					0.04344876163088429
STIAALVLLN	10	Unmodified	_STIAALVLLN_					0	0	0			REV__ENSG00000125910|ENST00000246115|S1PR4	REV__ENSG00000125910|ENST00000246115|S1PR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7923583984375	2	507.813325	1013.6121	-0.056265	-2.8572E-05	-3.4492	-0.0017515	-3.5055	-0.0017801	507.8120997642346	68.1	0.38602	68.1	67.831	68.217	0					11	9	2	0	0	0	0.03519	1	8168	8168		37.812	5.8567	1	112440	+		76835	22861	53568	53657	84786	84786					0.10583486654172702
STIAWAMASL	10	Unmodified	_STIAWAMASL_					0	0	0		ENSG00000138050|ENST00000505747|THUMPD2;nc|ENSG00000138050|Q9BTF0-2|THUMPD2;ENST00000460072.5_1_2:39984490-39995716:-|nuORF	ENSG00000138050|ENST00000505747|THUMPD2	ENSG00000138050|ENST00000505747|THUMPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7659301757812	2	525.76806	1049.52157	-0.32634	-0.00017158	-4.0928	-0.0021518	-4.4191	-0.0023234	525.7658959057911	30.739	1.2718	30.813	30.42	31.691	0.074314					86	30	4	0	0	0	0.82838	1	1940	1940		58.782	5.4305	1	3654900			76836	5196	53569	53658	84787	84787					-0.001213056657661582
STIFIRKF	8	Unmodified	_STIFIRKF_					0	0	0			REV__ENST00000261254.7_1_12:4413568-4413715:+|nuORF	REV__ENST00000261254.7_1_12:4413568-4413715:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.27734375	2	506.302927	1010.5913	-0.18965	-9.6022E-05	3.5858	0.0018155	3.3961	0.0017195	506.30289185464983	54.854	0.14393	54.623	54.53	54.674	-0.23087					5	3	2	0	0	0	0.027866	1	5853	5853		47.916	15.961	1	34844	+		76837	29616	53570	53659	84788	84788					0.086429410651931
STIHLPLN	8	Unmodified	_STIHLPLN_					0	0	0			REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	REV__nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.7557678222656	2	447.75581	893.497067	0.61884	0.00027709	-0.39734	-0.00017791	0.2215	9.9179E-05	447.75547321758864	57.388	0.77425	57.213	56.834	57.608	-0.1749					57	20	4	0	0	0	0.93274	1	6413	6413		47.916	7.343	1	3745700	+		76838	27865	53571	53660	84789	84789					0.046058022430429446
STIKIQAMW	9	Unmodified	_STIKIQAMW_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2888793945312	2	539.291702	1076.56885	-1.6775	-0.00090465	1.1795	0.0006361	-0.49797	-0.00026855	539.2923661138805	65.449	0.49213	65.236	64.971	65.463	-0.21327					26	11	3	0	0	0	0.39228	1	7478	7478		66.429	10.925	1	1774300			76839	1335	53572	53661	84790	84790					0.033629736052489534
STILRLLAE	9	Unmodified	_STILRLLAE_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.3061828613281	2	508.310949	1014.60735	0.33624	0.00017091	2.998	0.0015239	3.3342	0.0016948	508.31211046818424	91.757	0.60039	91.767	91.359	91.959	0.0094147					24	13	2	0	0	0	0.024447	1	11532	11532		13.454	7.1414	1	114190			76840	1825	53573	53662	84791	84791					0.10062602511413843
STILRLLAE	9	Unmodified	_STILRLLAE_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;HUWE1|p.K2274Mfs*55|1|0.54|ENSG00000086758|chrX:53565123-53565126|GACT/-|frameshift_variant;HUWE1|p.S2508Ifs*81|1|0.64|ENSG00000086758|chrX:53560403-53560404|-/G|frameshift_variant	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.3061218261719	2	508.310949	1014.60735	-1.4281	-0.00072592	4.4907	0.0022827	3.0626	0.0015568	508.3127864126758	91.619	1.2594	91.47	91.183	92.442	-0.1487					35	29	2	0	0	0	0.024447	1	11275	11275		19.104	4.9664	1	111030			76841	1825	53573	53662	84792	84792					0.10062602511413843
STIPLRLM	8	Unmodified	_STIPLRLM_					0	0	0		ENST00000575978.1_1_17:78109805-78109874:-|nuORF	ENST00000575978.1_1_17:78109805-78109874:-|nuORF	ENST00000575978.1_1_17:78109805-78109874:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.77691650390625	2	465.775688	929.536823	0.065671	3.0588E-05	3.2586	0.0015178	3.3243	0.0015484	465.77702176396326	81.519	3.6939	81.543	79.858	83.552	0.023911					241	88	3	0	0	0	1.0574	1	10046	10046		25.45	0	1	1163400			76842	17104	53574	53663	84793	84793					0.06923605922099796
STIPQMPQ	8	Oxidation (M)	_STIPQM(Oxidation (M))PQ_		STIPQM(1)PQ		STIPQM(61)PQ	0	0	1		OBSCN-CASZ1|1|fusion;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2256774902344	2	459.223485	916.432418	-0.63791	-0.00029294	4.3869	0.0020146	3.749	0.0017216	459.2256023031956	26.277	2.3769	26.041	25.593	27.97	-0.23603					166	59	4	0	0	0	0.77775	1	1320	1320		60.972	6.1956	1	35750000			76843	18899	53575	53664	84794	84794		595			-0.029141406252506385
STIRILFSD	9	Unmodified	_STIRILFSD_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.3030395507812	2	526.292756	1050.57096	1.8991	0.00099947	1.5444	0.00081278	3.4434	0.0018123	526.2930975468917	63.906	0.25174	63.951	63.794	64.046	0.045502					9	6	2	0	0	0	0.024381	1	7400	7400		45.952	0	1	126030	+		76844	20533	53576	53665	84795	84795					0.047697256147330336
STITLHLV	8	Unmodified	_STITLHLV_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2665100097656	2	442.26601	882.517468	-0.71253	-0.00031513	0.67678	0.00029932	-0.035747	-1.581E-05	442.26617772426124	60.6	0.97247	60.6	60.401	61.374	0					66	25	4	0	0	0	0.27115	1	6976	6976		124.32	9.7277	1	5239000			76845	2283	53577	53666	84796	84796					0.07150972902843478
STITLHLV	8	Unmodified	_STITLHLV_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.26708984375	2	442.26601	882.517468	-1.302	-0.00057582	1.273	0.00056299	-0.029007	-1.2829E-05	442.26641757956594	60.587	1.0493	60.666	60.392	61.442	0.078884					72	27	4	0	0	0	0.40853	1	6879	6879		96.048	9.1131	1	6081900			76846	2283	53577	53666	84797	84797					0.07150972902843478
STIYDLLKD	9	Unmodified	_STIYDLLKD_					0	0	0		nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2850952148438	2	534.284597	1066.55464	-0.18865	-0.00010079	0.16099	8.6015E-05	-0.027663	-1.478E-05	534.2849371700632	106.21	1.4778	106.08	105.4	106.88	-0.1238					106	54	3	0	0	0	0.87448	1	13223	13223		34.173	0	1	251420			76847	2591	53578	53667	84798	84798					0.024025996579666753
STKDVPLAL	9	Unmodified	_STKDVPLAL_					0	0	0		PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant;ENSG00000171608|ENST00000377346|PIK3CD	PIK3CD|p.Q295Rfs*39|1|0.18|ENSG00000171608|chr1:9717056-9717056|C/-|frameshift_variant;ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2763977050781	2	472.276575	942.538597	-0.59429	-0.00028067	-2.256	-0.0010655	-2.8503	-0.0013461	472.27509255068554	77.129	0.61281	76.967	76.742	77.355	-0.16196					19	14	2	0	0	0	0.20967	1	9168	9168		87.754	10.437	1	340250			76848	18966;8176	53579	53668	84799	84799					0.06502938211690434
STKNIPSY	8	Unmodified	_STKNIPSY_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2384948730469	2	455.23745	908.460347	-0.11418	-5.198E-05	-0.53038	-0.00024145	-0.64456	-0.00029343	455.23709140982135	102.93	0.71021	102.8	102.54	103.25	-0.12783					37	16	3	0	0	0	1.0574	1	12794	12794		24.203	0	1	2037700			76849	6249	53580	53669	84800	84800					0.00245505626457998
STKPGNWQ	8	Unmodified	_STKPGNWQ_					0	0	0			REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.2250061035156	2	459.227417	916.44028	-0.90546	-0.00041581	-4.1481	-0.0019049	-5.0535	-0.0023207	459.2256379392626	26.131	2.5714	25.967	25.457	28.029	-0.16331					204	65	5	0	0	0	1.0198	1	1385	1385		34.173	0	1	50655000	+		76850	23621	53581	53670	84801	84801					-0.021282453134745083
STKPLLAPK	9	Unmodified	_STKPLLAPK_					0	0	0		ENSG00000115325|ENST00000233668|DOK1;nc|ENSG00000115325|Q99704-3|DOK1	ENSG00000115325|ENST00000233668|DOK1	ENSG00000115325|ENST00000233668|DOK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7923583984375	2	477.80276	953.590967	-0.19722	-9.4231E-05	0.32675	0.00015612	0.12953	6.1892E-05	477.8028025550018	50.608	0.41064	50.689	50.51	50.92	0.08099					16	11	2	0	0	0	0.024374	1	5249	5249		49.442	13.823	1	177210			76851	3435	53582	53671	84802	84802					0.11231521345325746
STKQKVAL	8	Unmodified	_STKQKVAL_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.77154541015625	2	437.77146	873.528367	0.20674	9.0504E-05	0.053638	2.3481E-05	0.26037	0.00011398	437.7713630006274	22.62	0.73918	22.431	22.147	22.886	-0.18894					30	15	3	0	0	0	0.39824	1	829	829		97.473	12.113	1	424930			76852	3227	53583	53672	84803	84803					0.08654375277126292
STKTAFHRSQ	10	Unmodified	_STKTAFHRSQ_					0	0	0		ENSG00000096093|ENST00000371068|EFHC1;nc|ENSG00000096093|Q5JVL4-2|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.2689819335938	2	581.801811	1161.58907	-0.24178	-0.00014067	3.312	0.0019269	3.0702	0.0017863	581.8037647180688	63.806	0.9114	63.548	63.162	64.073	-0.25824					44	23	2	0	0	0	0.03519	1	7216	7216		35.152	4.6484	1	4285300			76853	2048	53584	53673	84804	84804					0.01473860589430842
STKVPLNQ	8	Unmodified	_STKVPLNQ_					0	0	0		ENST00000431828.5_1_2:97297199-97302790:-|nuORF	ENST00000431828.5_1_2:97297199-97302790:-|nuORF	ENST00000431828.5_1_2:97297199-97302790:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.2919006347656	2	443.753267	885.491981	-0.083813	-3.7192E-05	-0.6367	-0.00028254	-0.72051	-0.00031973	443.75262406113404	28.006	0.51091	27.854	27.61	28.121	-0.15195					21	12	2	0	0	0	0.027866	1	1589	1589		21.96	0	1	228290			76854	14191	53585	53674	84805	84805					0.044654983804207404
STLGVIEAIA	10	Unmodified	_STLGVIEAIA_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;PTPRD|p.N738Ifs*7|1|0.44|ENSG00000153707|chr9:8499758-8499758|G/-|frameshift_variant	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.78143310546875	2	487.281857	972.549162	-0.16084	-7.8375E-05	0.17234	8.3977E-05	0.011497	5.6024E-06	487.28185685956845	57.545	0.93205	57.545	57.227	58.159	0					60	24	5	0	0	0	0.77808	1	6521	6521		62.107	1.7038	1	15475000			76855	6354	53586	53675	84806	84806					0.0617892086613665
STLIDRLE	8	Unmodified	_STLIDRLE_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7646179199219	2	473.763832	945.513111	-0.61377	-0.00029078	1.939	0.00091861	1.3252	0.00062783	473.76464372116556	28.446	0.9012	28.294	27.922	28.824	-0.15195					52	21	4	0	0	0	0.96769	1	1651	1651		42.396	5.237	1	2336100			76856	8916	53587	53676	84807	84807					0.038174636892904346
STLNCTITAF	10	Unmodified	_STLNCTITAF_					0	0	0			REV__ENSG00000213949|ENST00000282588|ITGA1	REV__ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.7552490234375	2	535.762975	1069.5114	-1.0498	-0.00056243	0.71142	0.00038115	-0.33836	-0.00018128	535.7633256888678	38.326	0.40123	38.107	37.926	38.327	-0.21848					17	11	2	0	0	0	0.03519	1	3171	3171		34.173	0	1	579430	+		76857	28759	53588	53677	84808	84808					-0.020579133909905067
STLPTQIAP	9	Unmodified	_STLPTQIAP_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2611389160156	2	464.260925	926.507297	1.0017	0.00046505	-0.86484	-0.00040151	0.13686	6.3537E-05	464.2603591104738	59.984	1.0906	59.787	59.339	60.429	-0.19742					60	27	3	0	0	0	0.39228	1	6637	6637		66.429	0.96389	1	3684400			76858	8686	53589	53678	84809	84809					0.041103651776211336
STLRHSLI	8	Unmodified	_STLRHSLI_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.27813720703125	2	463.774534	925.534515	-0.11325	-5.2525E-05	1.2681	0.00058813	1.1549	0.00053561	463.7742357687104	49.388	1.058	49.236	48.864	49.922	-0.15277					84	28	5	0	0	0	0.87658	1	5091	5091		52.937	2.9122	1	8462700	+		76859	21681	53590	53679	84810	84810					0.0687689350867231
STLRSREEG	9	Unmodified	_STLRSREEG_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENST00000432615.5_1_7:158447451-158457424:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3058471679688	2	517.764894	1033.51524	0.85952	0.00044503	3.5443	0.0018351	4.4038	0.0022801	517.7666880462258	59.946	0.84277	59.748	59.297	60.14	-0.19742					48	21	3	0	0	0	0.024418	1	6644	6644		45.972	5.1941	1	2263100			76860	5920	53591	53680	84811	84811					-0.00018107572896042257
STLSTVSAE	9	Unmodified	_STLSTVSAE_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-4|XRRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.896484375	2	447.724372	893.434192	-0.33352	-0.00014933	2.5792	0.0011548	2.2457	0.0010055	447.7251419919616	24.196	0.61003	24.196	23.908	24.518	0					27	13	3	0	0	0	0.024506	1	1026	1026		10.866	0	1	283280	+		76861	36887	53592	53681	84812	84812					-0.016788083356573225
STLTIHVL	8	Unmodified	_STLTIHVL_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.26641845703125	2	442.26601	882.517468	-0.71253	-0.00031513	0.67678	0.00029932	-0.035747	-1.581E-05	442.26617772426124	60.6	0.97247	60.6	60.401	61.374	0					66	25	4	0	0	0	0.30995	2	6999	6986;6999		109.7	0	1	5239000			76862	18160;18161	53593	53682	84813;84814	84814					0.07150972902854846
STLTIHVL	8	Unmodified	_STLTIHVL_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.26702880859375	2	442.26601	882.517468	-0.38764	-0.00017144	0.37048	0.00016385	-0.017168	-7.593E-06	442.26602206585	60.875	0.96777	60.662	60.421	61.389	-0.21339					66	25	4	0	0	0	0.23817	3	6976	6976;6988;7000		134.12	0	1	5676000			76863	18160;18161	53593	53682	84815;84816;84817	84815					0.07150972902854846
STLTIHVL	8	Unmodified	_STLTIHVL_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2667541503906	2	442.26601	882.517468	-1.302	-0.00057582	1.273	0.00056299	-0.029007	-1.2829E-05	442.26641757956594	60.587	1.0493	60.666	60.392	61.442	0.078884					72	27	4	0	0	0	0.34196	2	6891	6891;6903		105.27	0	1	6081900			76864	18160;18161	53593	53682	84818;84819	84818					0.07150972902854846
STMIIFLSW	9	Unmodified	_STMIIFLSW_					0	0	0		ENST00000396467.5_1_8:74202877-74202940:-|nuORF	ENST00000396467.5_1_8:74202877-74202940:-|nuORF	ENST00000396467.5_1_8:74202877-74202940:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.7909545898438	2	549.288628	1096.5627	0.080173	4.4038E-05	-0.95884	-0.00052668	-0.87866	-0.00048264	549.2880673348806	66.085	0.43242	66.085	65.875	66.307	0					17	11	2	0	0	0	0.024323	1	7881	7881		44.117	0	1	1011600			76865	13557	53594	53683	84820	84820					0.018284553737430542
STPAPGVCVAE	11	Unmodified	_STPAPGVCVAE_					0	0	0			REV__nc|ENSG00000175198|P05165-3|PCCA	REV__nc|ENSG00000175198|P05165-3|PCCA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.787841796875	2	515.747324	1029.4801	0.05366	2.7675E-05	3.1026	0.0016002	3.1563	0.0016279	515.7478362757771	49.181	0.21426	49.181	49.072	49.287	0					7	5	2	0	0	0	0.024762	1	5065	5065		37.812	0	1	42100	+		76866	26926	53595	53684	84821	84821					-0.033464864250845494
STPEPKIK	8	Unmodified	_STPEPKIK_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2873229980469	2	450.263468	898.512382	0.43314	0.00019503	0.17297	7.788E-05	0.6061	0.00027291	450.26200862769724	37.305	0.65045	37.112	36.659	37.309	-0.193					18	16	2	0	0	0	0.027866	1	2956	2956		68.485	27.912	1	86451			76867	5151	53596	53685	84822	84822					0.05906669040223278
STPFSGEVLR	10	Unmodified	_STPFSGEVLR_					0	0	0			REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7736206054688	2	546.787838	1091.56112	-0.31478	-0.00017212	3.2868	0.0017972	2.972	0.0016251	546.7894929495599	32.619	2.9776	32.383	31.189	34.167	-0.23667					113	73	2	0	0	0	0.03519	1	2378	2378		23.523	0	1	1351900	+		76868	31540	53597	53686	84823	84823					0.01900537609321873
STPPLRCSS	9	Unmodified	_STPPLRCSS_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.2333984375	2	474.234384	946.454216	-1.3894	-0.00065889	-1.3566	-0.00064334	-2.746	-0.0013022	474.2336235792196	40.581	1.5369	40.351	40.007	41.544	-0.23027					61	40	2	0	0	0	0.72494	1	3517	3517		44.377	0	1	4159700			76869	4927	53598	53687	84824	84824					-0.021153358766923702
STPSSIQQV	9	Unmodified	_STPSSIQQV_					0	0	0		ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.751953125	2	473.745639	945.476725	0.59388	0.00028135	1.6718	0.00079203	2.2657	0.0010734	473.74634847103755	57.114	0.63145	56.95	56.876	57.508	-0.16431					43	16	4	0	0	0	0.067814	1	6371	6371		122.18	0	1	4338800			76870	1064	53599	53688	84825	84825					0.0018058679256682808
STPSSIQQV	9	Unmodified	_STPSSIQQV_					0	0	0		ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	473.745639	945.476725	0.15834	7.5013E-05	5.6421	0.0026729	5.8005	0.0027479	473.7491622894825	56.798	0.84965	56.896	56.473	57.322	0.097897	-0.10492	0.0043732	NaN	122.18	64	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5922100			76871	1064	53599	53688							0.0018058679256682808
STPSSIQQV	9	Unmodified	_STPSSIQQV_					0	0	0		ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.745639	945.476725	-0.26402	-0.00012508	0.94206	0.0004463	0.67804	0.00032122	473.74589975682767	57.185	0.54578	57.017	56.823	57.369	-0.1672	0.016304	-8.0085E-05	NaN	122.18	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1153600			76872	1064	53599	53688							0.0018058679256682808
STPSSIQQV	9	Unmodified	_STPSSIQQV_					0	0	0		ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.745639	945.476725	0.31797	0.00015064	0.17093	8.0977E-05	0.4889	0.00023162	473.74555554550346	57.227	0.5027	57.025	56.855	57.358	-0.20209	0.023614	-0.00081072	NaN	122.18	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1119500			76873	1064	53599	53688							0.0018058679256682808
STPSSIQQV	9	Unmodified	_STPSSIQQV_					0	0	0		ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	ENSG00000039600|ENST00000265007|SOX30	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.745639	945.476725	-0.43256	-0.00020492	1.2402	0.00058755	0.80766	0.00038262	473.7459688095565	57.324	0.62835	57.096	56.92	57.548	-0.22795	0.095075	0.00020242	NaN	122.18	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	982790			76874	1064	53599	53688							0.0018058679256682808
STQKTQGYLSE	11	Unmodified	_STQKTQGYLSE_					0	0	0		ENSG00000179058|ENST00000372478|C9orf50	ENSG00000179058|ENST00000372478|C9orf50	ENSG00000179058|ENST00000372478|C9orf50	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.8838195800781	3	414.538458	1240.59355	-0.92023	-0.00038147	-3.6416	-0.0015096	-4.5618	-0.001891	414.53675621649876	27.87	0.43973	27.702	27.487	27.927	-0.16816					20	10	3	0	0	0	0.024771	1	1575	1575		41.08	9.5503	1	109500			76875	8866	53600	53689	84826	84826					-0.017127197783111114
STQNKLKLN	9	Unmodified	_STQNKLKLN_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.303655	1044.59276	0.50944	0.00026659	-0.88509	-0.00046317	-0.37565	-0.00019658	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.91321	1	10304	10304		31.53	0	1	3714800	+		76876	21700	53601	53690	84827	84827					0.07224530363282611
STQRRSLFN	9	Unmodified	_STQRRSLFN_					0	0	0			REV__ENST00000282030.5_1_18:42281513-42281621:+|nuORF	REV__ENST00000282030.5_1_18:42281513-42281621:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	554.7982177734375	2	554.796529	1107.5785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.329	1	98.205	97.705	98.705	-0.12413								0	0	0	0.39148	1	12187	12187		62.107	21.329	1		+		76877	29888	53602	53691	84828	84828					0.029018779349826218
STRAPATTW	9	Unmodified	_STRAPATTW_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.7541809082031	2	495.753798	989.493044	-0.84828	-0.00042054	0.19728	9.7804E-05	-0.651	-0.00032273	495.7537272559896	38.005	0.75176	37.783	37.504	38.256	-0.22149					50	21	4	0	0	0	0.32064	1	3091	3091		72.879	16.158	1	1770100			76878	4223	53603	53692	84829	84829					-0.0021228725069022403
STRAPATTW	9	Unmodified	_STRAPATTW_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.753798	989.493044	-0.60628	-0.00030056	0.25917	0.00012848	-0.34711	-0.00017208	495.75375221053525	37.962	0.61893	37.783	37.483	38.102	-0.17929	-9.9788E-05	2.3363E-06	NaN	72.879	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1927900			76879	4223	53603	53692							-0.0021228725069022403
STRAPATTW	9	Unmodified	_STRAPATTW_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.753798	989.493044	-0.97087	-0.00048131	0.30208	0.00014976	-0.66879	-0.00033156	495.7538566257893	38.002	0.68726	37.783	37.463	38.15	-0.21848	-0.00018499	4.4879E-05	NaN	72.879	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1753200			76880	4223	53603	53692							-0.0021228725069022403
STRDQKSGQCV	11	Unmodified	_STRDQKSGQCV_					0	0	0		ENST00000605946.1_1_10:31608461-31608611:-|nuORF	ENST00000605946.1_1_10:31608461-31608611:-|nuORF	ENST00000605946.1_1_10:31608461-31608611:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.7865600585938	2	604.788044	1207.56153	0.23818	0.00014405	-2.6933	-0.0016289	-2.4551	-0.0014848	604.7862775764208	74.205	1.6232	74.023	73.798	75.421	-0.18279					71	39	3	0	0	0	0.63824	1	8739	8739		67.494	3.2864	1	1890100			76881	17560	53604	53693	84830	84830					-0.033944107331080886
STRELLELY	9	Unmodified	_STRELLELY_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3001098632812	2	562.303321	1122.59209	0.13859	7.7932E-05	-1.4869	-0.00083611	-1.3483	-0.00075818	562.302480458896	23.747	0.68545	23.545	23.237	23.923	-0.20193					48	15	4	0	0	0	0.83071	1	990	990		37.159	2.9866	1	1320900	+		76882	23269	53605	53694	84831	84831					0.035696909235639396
STRLPPIDDMP	11	Unmodified	_STRLPPIDDMP_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.8137817382812	2	621.313363	1240.61217	-1.4993	-0.00093152	1.6931	0.001052	0.19384	0.00012043	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.90725	1	7703	7703		51.193	1.7511	1	29556000	+		76883	26377	53606	53695	84832	84832					0.0014911859186668153
STRLTPARI	9	Unmodified	_STRLTPARI_					0	0	0			REV__DENND5B|p.V601I|1|0.34|ENSG00000170456|chr12:31447598-31447598|C/T|missense_variant	REV__DENND5B|p.V601I|1|0.34|ENSG00000170456|chr12:31447598-31447598|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2846984863281	2	507.806365	1013.59818	-0.4855	-0.00024654	-0.56739	-0.00028812	-1.0529	-0.00053466	508.3072446600337	30.846	0.24951	30.858	30.75	30.999	0.011799					10	5	3	0	0	0	0.024374	1	2000	2000		40.778	0	1	40547	+		76884	19665	53607	53696	84833	84833					0.09192253945752782
STRPRSLSLQP	11	Unmodified	_STRPRSLSLQP_					0	0	0		ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	ENSG00000006638|ENST00000375190|TBXA2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3485717773438	2	621.351668	1240.68878	0.34141	0.00021214	-3.1138	-0.0019348	-2.7724	-0.0017227	621.3493135019298	103.03	0.40285	102.86	102.64	103.04	-0.17034					27	9	4	0	0	0	1.0558	1	12811	12811		14.694	0.60766	1	2374500			76885	799	53608	53697	84834	84834					0.07806678203382944
STRQLQIE	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STRQLQIE_					1	0	0			REV__nc|ENSG00000152430|Q8N9W6-2|BOLL	REV__nc|ENSG00000152430|Q8N9W6-2|BOLL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.27734375	2	508.772188	1015.52982	-0.54006	-0.00027477	2.0837	0.0010601	1.5436	0.00078533	508.77200365050044	33.945	1.2	33.945	33.626	34.826	0					58	30	3	0	0	0	0.67154	1	2532	2532		69.628	10.846	1	5734900	+		76886	36789	53609	53698	84835	84835					0.022679645752418764
STRVGGRLGP	10	Unmodified	_STRVGGRLGP_					0	0	0		nc|ENSG00000254536|Q6QHF9-4|PAOX	nc|ENSG00000254536|Q6QHF9-4|PAOX	nc|ENSG00000254536|Q6QHF9-4|PAOX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7636413574219	2	500.28834	998.562127	-0.17936	-8.9734E-05	3.1132	0.0015575	2.9338	0.0014678	500.2897391270282	43.064	0.68914	42.924	42.521	43.21	-0.13929					30	18	3	0	0	0	0.03519	1	3981	3981		29.17	0	1	369150			76887	18773	53610	53699	84836	84836					0.06278796768913253
STSRLTLFS	9	Unmodified	_STSRLTLFS_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000512281.1_1_5:118470015-118483170:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.2770690917969	2	506.277106	1010.53966	0.63021	0.00031906	-1.0992	-0.00055648	-0.46895	-0.00023742	506.2765194861555	54.784	1.2609	54.578	54.237	55.498	-0.20613					85	34	4	0	0	0	0.42604	3	5812	5812;5830;5843		64.207	5.4677	1	10048000			76888	8315	53611	53700	84837;84838;84839	84837					0.03481152580627622
STSTPGVYAR	10	Unmodified	_STSTPGVYAR_					0	0	0		CON__P00766	CON__P00766	CON__P00766	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.2420654296875	2	519.764363	1037.51417	0.053445	2.7779E-05	3.4221	0.0017787	3.4755	0.0018065	519.7654196356282	68.981	0.41428	68.751	68.598	69.012	-0.23048					16	9	2	0	0	0	0.03519	1	7986	7986		49.442	1.7842	1	152070		+	76889	498	53612	53701	84840	84840					-0.0030832194181584782
STTGKAEVIN	10	Unmodified	_STTGKAEVIN_					0	0	0		nc|ENSG00000133475|P36268-2|GGT2P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P	nc|ENSG00000133475|P36268-2|GGT2P	nc|ENSG00000133475|P36268-2|GGT2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2770690917969	2	510.272021	1018.52949	-0.17502	-8.931E-05	3.5594	0.0018162	3.3843	0.0017269	510.2738209542123	90.553	2.0357	90.537	90.077	92.112	-0.016716					109	48	4	0	0	0	0.34774	1	11472	11472		104.06	2.4561	1	30368000			76890	18280	53613	53702	84841	84841					0.020965448553738497
STTHCFLNK	9	Unmodified	_STTHCFLNK_					0	0	0		nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.767333984375	2	525.755484	1049.49641	-0.17766	-9.3404E-05	-3.9779	-0.0020914	-4.1556	-0.0021848	525.7523100942774	31.134	0.35916	30.981	30.765	31.124	-0.15231					22	8	3	0	0	0	0.023817	1	2023	2023		60.972	13.315	1	100030			76891	18797	53614	53703	84842	84842					-0.026353604683208687
STTPLPPPK	9	Unmodified	_STTPLPPPK_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.2951965332031	2	469.271293	936.528032	0.34148	0.00016025	-0.15303	-7.1814E-05	0.18845	8.8433E-05	469.27035059579634	63.476	0.28797	63.225	63.12	63.408	-0.25141					9	7	2	0	0	0	0.023417	1	7397	7397		79.451	0	1	57033			76892	8157	53615	53704	84843	84843					0.05722955557280329
STTTLLPTTI	10	Unmodified	_STTTLLPTTI_					0	0	0		ENST00000557673.5_3_14:75590769-75590853:-|nuORF	ENST00000557673.5_3_14:75590769-75590853:-|nuORF	ENST00000557673.5_3_14:75590769-75590853:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2974853515625	2	524.300247	1046.58594	-1.0531	-0.00055216	-4.2184	-0.0022117	-5.2715	-0.0027639	524.297968411829	103.06	1.2007	103.06	102.65	103.85	0					86	29	4	0	0	0	0.62431	1	13204	13204		74.255	2.8771	1	4462700			76893	16736	53616	53705	84844	84844					0.06451172692050022
STVLMRTLN	9	Unmodified	_STVLMRTLN_					0	0	0			REV__ENSG00000138778|ENST00000265148|CENPE	REV__ENSG00000138778|ENST00000265148|CENPE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.784912109375	2	517.786784	1033.55902	0.12283	6.3599E-05	-3.6329	-0.001881	-3.51	-0.0018174	517.7847515708484	72.104	0.93321	72.114	71.802	72.736	0.0097733					50	23	3	0	0	0	0.51687	1	8687	8687		58.23	3.4536	1	2356700	+		76894	23899	53617	53706	84845	84845					0.04357785599881936
STVVRAYVL	9	Unmodified	_STVVRAYVL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000557589.1_1_12:56815505-56817595:-|nuORF	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2967834472656	2	504.297842	1006.58113	-0.33973	-0.00017132	0.10589	5.34E-05	-0.23383	-0.00011792	504.2978054810556	61.944	0.94502	61.687	61.383	62.328	-0.25725					76	23	4	0	0	0	0.62163	2	6918	6918;6943		51.335	1.3109	1	4849600			76895	3124	53618	53707	84846;84847	84846					0.0781033333993264
STWIRIFK	8	Unmodified	_STWIRIFK_					0	0	0		ENST00000469266.1_1_3:146246374-146246461:-|nuORF;ENST00000342435.8_1_3:146243405-146246461:-|nuORF	ENST00000469266.1_1_3:146246374-146246461:-|nuORF	ENST00000469266.1_1_3:146246374-146246461:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7821655273438	2	525.808377	1049.6022	-0.63113	-0.00033185	-3.3667	-0.0017702	-3.9978	-0.0021021	525.8062237844413	19.758	0.37868	19.758	19.6	19.979	0					14	7	2	0	0	0	0.027866	1	473	473		12.959	0	1	141110			76896	12509	53619	53708	84848	84848					0.07938343439468554
STWQRLPQLLR	11	Unmodified	_STWQRLPQLLR_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.60833740234375	3	466.605249	1396.79392	1.3691	0.00063883	4.1492	0.001936	5.5183	0.0025749	466.60691947974294	98.496	2.2018	98.494	97.145	99.346	-0.0020828					151	50	4	0	0	0	1.0379	1	12409	12409		28.384	5.8222	1	570500			76897	10441	53620	53709	84849	84849					0.11139219399797184
STWWSLLGL	9	Unmodified	_STWWSLLGL_					0	0	0			REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF	REV__ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.8165893554688	2	531.784567	1061.55458	-0.79001	-0.00042012	0.20982	0.00011158	-0.58019	-0.00030853	532.2873434666143	85.042	0.99763	85.068	84.497	85.494	0.025536					25	21	2	0	0	0	0.024374	1	10615	10615		40.778	11.629	1	1199500	+		76898	21113	53621	53710	84850	84850					0.026266444486282126
STYFSHNIW	9	Unmodified	_STYFSHNIW_					0	0	0			REV__nc|ENSG00000100150|O75140-5|DEPDC5;REV__nc|ENSG00000100150|O75140-6|DEPDC5	REV__nc|ENSG00000100150|O75140-6|DEPDC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.7698974609375	2	577.766906	1153.51926	0.1292	7.4645E-05	3.9015	0.0022541	4.0307	0.0023288	577.7697100690976	51.867	1.8024	51.683	51.337	53.139	-0.18404					139	46	7	0	0	0	0.20967	3	5322	5322;5332;5355		87.754	26.782	1	23481000	+		76899	21055;36515	53622	53711	84851;84852;84853	84851					-0.05136018079201676
STYINANYI	9	Unmodified	_STYINANYI_					0	0	0		nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;ENST00000549107.5_1_12:71032966-71078579:-|nuORF;ENST00000548220.1_1_12:71054984-71148538:-|nuORF	nc|ENSG00000153233|Q15256-5|PTPRR	nc|ENSG00000153233|Q15256-5|PTPRR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.760986328125	2	529.761289	1057.50803	-0.56805	-0.00030093	-1.1599	-0.00061448	-1.728	-0.00091541	529.7597633421777	85.617	1.003	85.559	85.104	86.107	-0.05761					47	23	3	0	0	0	0.4752	1	10717	10717		60.972	8.6728	1	744990			76900	6332	53623	53712	84854	84854					-0.018428401733444844
STYITRTM	8	Oxidation (M)	_STYITRTM(Oxidation (M))_		STYITRTM(1)		STYITRTM(66)	0	0	1			REV__ENSG00000204351|ENST00000375394|SKIC2	REV__ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7406311035156	2	494.742042	987.469531	-0.062591	-3.0966E-05	-3.4433	-0.0017035	-3.5059	-0.0017345	494.74021502667273	53.635	1.7588	53.39	52.975	54.733	-0.2453					117	51	4	0	0	0	0.71063	1	5625	5625		66.429	10.925	1	6426300	+		76901	28596	53624	53713	84855	84855		849			-0.02470469079491977
STYPKRLL	8	Unmodified	_STYPKRLL_					0	0	0			REV__ENSG00000147613|ENST00000276616|PSKH2	REV__ENSG00000147613|ENST00000276616|PSKH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2657775878906	2	489.292559	976.570566	0.07978	3.9036E-05	2.9561	0.0014464	3.0359	0.0014854	489.29377084939136	55.897	0.32301	55.681	55.485	55.808	-0.21607					20	8	4	0	0	0	0.027866	1	6015	6015		76.847	0	1	526800	+		76902	24572	53625	53714	84856	84856					0.0813435068552053
STYQGERAY	9	Unmodified	_STYQGERAY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7459106445312	2	537.74617	1073.47779	-0.83892	-0.00045112	0.18828	0.00010125	-0.65064	-0.00034988	537.7461975735306	30.095	0.67628	29.945	29.668	30.344	-0.14952					35	15	3	0	0	0	0.51687	1	1872	1872		58.23	17.657	1	844070			76903	756;17502	53626	53715	84857	84857					-0.05601198838508026
STYQGERAY	9	Unmodified	_STYQGERAY_					0	0	0		ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18976320-18976969:+|nuORF	ENSG00000005007|ENST00000262803|UPF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.74617	1073.47779	-0.70366	-0.00037839	-0.2205	-0.00011857	-0.92416	-0.00049696	537.7460776340888	30.341	0.50355	30.096	29.82	30.323	-0.24415	0.075645	-0.00024161	NaN	58.23	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	814140			76904	756;17502	53626	53715							-0.05601198838508026
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2708435058594	2	456.269084	910.523616	-0.17186	-7.8415E-05	1.7164	0.00078316	1.5446	0.00070475	456.27037866982823	27.825	1.7396	27.825	27.251	28.99	0					100	43	5	0	0	0	0.086035	4	1547	1547;1559;1571;1584		115.49	25.124	1	13112000			76905	1390	53627	53716	84858;84859;84860;84861	84858					0.06477491134364755
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2695617675781	2	456.269084	910.523616	-0.28278	-0.00012902	1.6957	0.00077368	1.4129	0.00064466	456.27037668042	27.792	1.7927	27.788	27.214	29.006	-0.0042782					118	44	5	0	0	0	0.067814	2	1567	1532;1567		122.18	24.374	1	12699000			76906	1390	53627	53716	84862;84863	84863					0.06477491134364755
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2696533203125	2	456.269084	910.523616	-0.46161	-0.00021062	2.0044	0.00091453	1.5427	0.00070391	456.2704592812881	27.585	1.4857	27.667	27.171	28.657	0.081291					100	37	5	0	0	0	0.086035	1	1494	1494		115.49	16.865	1	13228000			76907	1390	53627	53716	84864	84864					0.06477491134364755
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.268798828125	2	456.269084	910.523616	-0.15782	-7.2007E-05	0.1565	7.1407E-05	-0.0013157	-6.0033E-07	456.2690338635349	27.847	1.1593	27.603	27.333	28.492	-0.24438					58	27	4	0	0	0	0.17822	2	1570	1570;1584		93.195	13.256	1	2720200			76908	1390	53627	53716	84865;84866	84865					0.06477491134364755
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2689208984375	2	456.269084	910.523616	-0.82896	-0.00037823	0.90766	0.00041414	0.078702	3.5909E-05	456.26934404313107	27.676	0.93804	27.508	27.317	28.255	-0.16816					58	22	5	0	0	0	0.17822	1	1540	1540		93.195	13.256	1	2920900			76909	1390	53627	53716	84867	84867					0.06477491134364755
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.2692565917969	2	456.269084	910.523616	-0.2265	-0.00010334	0.28382	0.0001295	0.05732	2.6154E-05	456.2690686902195	27.861	1.0071	27.709	27.353	28.36	-0.15195					52	24	4	0	0	0	0.053401	2	1559	1546;1559		127.46	31.271	1	3174100			76910	1390	53627	53716	84868;84869	84869					0.06477491134364755
SVAIAKVQ	8	Unmodified	_SVAIAKVQ_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-5|DZANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.5354309082031	2	408.252903	814.491253	-0.77933	-0.00031817	2.709	0.0011059	1.9296	0.00078777	408.2542883995909	21.829	0.57813	21.616	21.41	21.988	-0.2128					23	11	3	0	0	0	0.027866	1	672	672		11.511	3.8207	1	65408	+		76911	36496	53628	53717	84870	84870					0.07658703731385685
SVALAYAHD	9	Unmodified	_SVALAYAHD_					0	0	0			REV__nc|ENSG00000151093|Q9NWU1-2|OXSM	REV__nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.27178955078125	2	473.735074	945.455596	0.18683	8.8506E-05	-1.9569	-0.00092707	-1.7701	-0.00083856	473.73348596332085	40.976	0.45951	40.999	40.864	41.324	0.023006					17	12	2	0	0	0	0.024477	1	3644	3644		27.882	13.017	1	207200	+		76912	24751	53629	53718	84871	84871					-0.019313785162921704
SVALAYAHD	9	Unmodified	_SVALAYAHD_					0	0	0			REV__nc|ENSG00000151093|Q9NWU1-2|OXSM	REV__nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.735074	945.455596	1.1215	0.0005313	-0.35495	-0.00016815	0.76655	0.00036314	473.7344590385252	40.903	0.32705	40.78	40.689	41.016	-0.12317	-0.10964	0.00050465	NaN	20.947	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344110	+		76913	24751	53629	53718							-0.019313785162921704
SVALEFLER	9	Unmodified	_SVALEFLER_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.31103515625	2	532.292756	1062.57096	-0.71498	-0.00038058	2.2312	0.0011877	1.5163	0.0008071	532.2941099266957	35.401	0.23692	35.214	35.023	35.26	-0.18675					11	5	3	0	0	0	0.024457	1	2657	2657		45.952	11.779	1	65271			76914	4299	53630	53719	84872	84872					0.04217725614716983
SVALKGHSL	9	Unmodified	_SVALKGHSL_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.27386474609375	2	456.269084	910.523616	-0.17186	-7.8415E-05	1.7164	0.00078316	1.5446	0.00070475	456.27037866982823	27.825	1.7396	27.825	27.251	28.99	0					100	43	5	0	0	0	0.6504	1	1536	1536		49.442	7.0454	1	13112000			76915	8797	53631	53720	84873	84873					0.06477491134376123
SVALKGHSL	9	Unmodified	_SVALKGHSL_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.2695617675781	2	456.269084	910.523616	-0.28278	-0.00012902	1.6957	0.00077368	1.4129	0.00064466	456.27037668042	27.792	1.7927	27.788	27.214	29.006	-0.0042782					118	44	5	0	0	0	0.17822	2	1543	1543;1555		93.195	2.8256	1	12699000			76916	8797	53631	53720	84874;84875	84874					0.06477491134376123
SVALKGHSL	9	Unmodified	_SVALKGHSL_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.27032470703125	2	456.269084	910.523616	-0.46161	-0.00021062	2.0044	0.00091453	1.5427	0.00070391	456.2704592812881	27.585	1.4857	27.667	27.171	28.657	0.081291					100	37	5	0	0	0	0.23085	3	1468	1458;1468;1481		84.916	3.4199	1	13228000			76917	8797	53631	53720	84876;84877;84878	84877					0.06477491134376123
SVALKGHSL	9	Unmodified	_SVALKGHSL_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2689514160156	2	456.269084	910.523616	-0.82896	-0.00037823	0.90766	0.00041414	0.078702	3.5909E-05	456.26934404313107	27.676	0.93804	27.508	27.317	28.255	-0.16816					58	22	5	0	0	0	0.31037	1	1552	1552		74.255	0	1	2920900			76918	8797	53631	53720	84879	84879					0.06477491134376123
SVALKRVGP	9	Unmodified	_SVALKRVGP_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.76416015625	2	463.792727	925.5709	-0.69143	-0.00032068	0.13908	6.4504E-05	-0.55235	-0.00025618	463.7926609383814	33.275	0.75877	33.275	32.941	33.7	0					49	20	4	0	0	0	0.023596	1	2429	2429		35.618	5.1146	1	1320800			76919	4023	53632	53721	84880	84880					0.1051377040537318
SVALKRVGP	9	Unmodified	_SVALKRVGP_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.76416015625	2	463.792727	925.5709	-0.65113	-0.00030199	-0.24115	-0.00011184	-0.89228	-0.00041383	463.792573327042	33.155	0.7591	33.161	32.813	33.572	0.0066261					57	20	3	0	0	0	0.022924	1	2401	2401		44.117	5.3107	1	1208900			76920	4023	53632	53721	84881	84881					0.1051377040537318
SVALLLPTL	9	Unmodified	_SVALLLPTL_					0	0	0			REV__ENSG00000107890|ENST00000376087|ANKRD26	REV__ENSG00000107890|ENST00000376087|ANKRD26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7642517089844	2	463.799686	925.584819	-0.46375	-0.00021509	-4.2522	-0.0019722	-4.716	-0.0021873	463.79803450173483	33.875	0.34951	33.875	33.662	34.011	0					14	8	2	0	0	0	0.024354	1	2454	2454		23.042	0	1	61597	+		76921	21696	53633	53722	84882	84882					0.11905003113804469
SVALNQPSLIL	11	Unmodified	_SVALNQPSLIL_					0	0	0			REV__ENST00000452075.7_1_10:43047711-43047983:-|nuORF	REV__ENST00000452075.7_1_10:43047711-43047983:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.77734375	2	577.842613	1153.67067	-0.40534	-0.00023422	1.2698	0.00073375	0.86447	0.00049953	577.8432666444888	47.05	0.52627	46.781	46.561	47.087	-0.26939					27	14	3	0	0	0	0.024774	1	4548	4548		17.468	0	1	233530	+		76922	32447	53634	53723	84883	84883					0.09998543228653034
SVALNQPSLIL	11	Unmodified	_SVALNQPSLIL_					0	0	0			REV__ENST00000452075.7_1_10:43047711-43047983:-|nuORF	REV__ENST00000452075.7_1_10:43047711-43047983:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	577.842613	1153.67067	-0.0078797	-4.5532E-06	0.695	0.0004016	0.68712	0.00039704	577.8429562473681	46.674	0.3873	46.577	46.473	46.86	-0.096653	-0.097977	-0.00057858	NaN	12.207	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261310	+		76923	32447	53634	53723							0.09998543228653034
SVALSWVLP	9	Unmodified	_SVALSWVLP_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7708435058594	2	486.28166	970.548768	0.57197	0.00027814	0.50394	0.00024506	1.0759	0.00052319	486.28155169162903	56.873	0.23244	56.648	56.544	56.776	-0.2248					12	5	3	0	0	0	0.024506	1	6179	6179		30.504	0	1	382550	+		76924	21560	53635	53724	84884	84884					0.06231545936930161
SVANVVPEIMG	11	Unmodified	_SVANVVPEIMG_					0	0	0			REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	REV__ENST00000469239.1_1_1:151271282-151274337:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.3240356445312	2	558.291899	1114.56925	-0.14545	-8.1204E-05	0.48931	0.00027318	0.34386	0.00019197	558.2919424052994	76.505	1.1825	76.237	75.665	76.848	-0.26807					54	28	3	0	0	0	0.024778	1	9039	9039		29.17	0	1	1694600	+		76925	24242	53636	53725	84885	84885					0.01654348534430028
SVAPQDFWR	9	Unmodified	_SVAPQDFWR_					0	0	0		ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.2719116210938	2	553.274898	1104.53524	-0.38353	-0.0002122	-3.8363	-0.0021225	-4.2199	-0.0023347	553.2728237956024	77.599	1.3305	77.613	77.231	78.562	0.013496					50	31	2	0	0	0	0.42604	1	9516	9516		64.207	2.0999	1	1570600			76926	6942	53637	53726	84886	84886					-0.012843118423006672
SVARAPTY	8	Unmodified	_SVARAPTY_					0	0	0		ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.7319641113281	2	432.732335	863.450116	0.26426	0.00011436	-1.3347	-0.00057759	-1.0705	-0.00046323	432.731609240746	98.399	2.1324	98.399	97.814	99.946	0					148	49	4	0	0	0	0.99042	2	12591	12555;12591		38.806	6.8513	1	3598600			76927	15061	53638	53727	84887;84888	84888					0.012929426918958598
SVARAPTY	8	Unmodified	_SVARAPTY_					0	0	0		ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7317810058594	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	0.91239	3	12555	12508;12543;12555		50.025	7.5501	1	3615900			76928	15061	53638	53727	84889;84890;84891	84891					0.012929426918958598
SVARAPTY	8	Unmodified	_SVARAPTY_					0	0	0		ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.7322082519531	2	432.732335	863.450116	0.94554	0.00040916	-2.2002	-0.00095211	-1.2547	-0.00054294	432.7313165592402	98.51	1.8019	98.507	97.893	99.695	-0.0026855					100	41	3	0	0	0	0.97924	3	12484	12473;12484;12532		40.573	1.7665	1	3032200			76929	15061	53638	53727	84892;84893;84894	84893					0.012929426918958598
SVARAPTY	8	Unmodified	_SVARAPTY_					0	0	0		ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.73187255859375	2	432.732335	863.450116	1.1632	0.00050335	-1.9665	-0.00085099	-0.80336	-0.00034764	432.7312915054073	99.078	2.4922	98.954	97.371	99.863	-0.12459					146	62	4	0	0	0	1.0239	1	12295	12295		33.516	0	1	1722000			76930	15061	53638	53727	84895	84895					0.012929426918958598
SVARAPTY	8	Unmodified	_SVARAPTY_					0	0	0		ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	ENST00000475482.5_1_2:9563975-9564143:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.73187255859375	2	432.732335	863.450116	0.37396	0.00016182	-1.2037	-0.0005209	-0.82978	-0.00035907	432.7315828437003	99.213	1.8927	99.045	97.901	99.794	-0.16863					128	46	4	0	0	0	1.0239	1	12273	12273		33.516	3.0119	1	1517800			76931	15061	53638	53727	84896	84896					0.012929426918958598
SVARMDVI	8	Unmodified	_SVARMDVI_					0	0	0		ENST00000471215.1_1_7:73111691-73111847:+|nuORF	ENST00000471215.1_1_7:73111691-73111847:+|nuORF	ENST00000471215.1_1_7:73111691-73111847:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2249450683594	2	445.741845	889.469137	0.0073396	3.2716E-06	-3.3371	-0.0014875	-3.3298	-0.0014842	445.7400100924994	30.771	0.94734	30.619	30.177	31.124	-0.15231					58	22	4	0	0	0	0.027866	1	1918	1918		11.511	0	1	361000			76932	14952	53639	53728	84897	84897					0.019981559913162528
SVARTPLRG	9	Unmodified	_SVARTPLRG_					0	0	0		ENST00000424086.5_1_2:120436761-120437079:+|nuORF	ENST00000424086.5_1_2:120436761-120437079:+|nuORF	ENST00000424086.5_1_2:120436761-120437079:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	477.80364990234375	2	478.785433	955.556313	-0.92729	-0.00044397	0.92785	0.00044424	0.00055528	2.6586E-07	478.78580113422663	91.323	1.428	91.174	90.813	92.241	-0.1487					71	33	4	0	0	0	0.024477	1	11158	11158		35.618	15.622	1	2668700			76933	14034	53640	53729	84898	84898					0.07675698257230579
SVASTCLEPN	10	Unmodified	_SVASTCLEPN_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8367919921875	2	510.736957	1019.45936	-0.64587	-0.00032987	-2.2559	-0.0011522	-2.9018	-0.0014821	510.73575420656687	45.681	0.61206	45.53	45.244	45.856	-0.15156					23	17	2	0	0	0	0.03519	1	4492	4492		40.058	0	1	330710	+		76934	20711	53641	53730	84899	84899					-0.04959076804743745
SVAVSPFVLV	10	Unmodified	_SVAVSPFVLV_					0	0	0			REV__ENST00000242059.9_1_7:29963066-29963327:-|nuORF	REV__ENST00000242059.9_1_7:29963066-29963327:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.2685241699219	2	509.302593	1016.59063	-0.12512	-6.3723E-05	2.822	0.0014373	2.6969	0.0013735	509.3038750981025	62.016	0.70395	61.789	61.415	62.119	-0.22663					28	18	2	0	0	0	0.03519	1	7206	7206		44.117	0	1	298350	+		76935	29453	53642	53731	84900	84900					0.08300101625479783
SVAYIPVVQ	9	Unmodified	_SVAYIPVVQ_					0	0	0			REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7789001464844	2	488.279118	974.543683	-0.53279	-0.00026015	3.4959	0.001707	2.9631	0.0014468	488.2808041168804	24.46	0.31086	24.46	24.297	24.608	0					18	6	3	0	0	0	0.024457	1	1074	1074		15.642	0	1	969510	+		76936	24156	53643	53732	84901	84901					0.055392420743373805
SVCCSMAGLG	10	Carbamidomethyl (C)	_SVCC(Carbamidomethyl (C))SMAGLG_	SVC(0.159)C(0.841)SMAGLG		SVC(-7.2)C(7.2)SMAGLG		0	1	0			REV__nc|ENSG00000186111|O60331-2|PIP5K1C	REV__nc|ENSG00000186111|O60331-2|PIP5K1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.6992492675781	2	492.701005	983.387458	-0.28544	-0.00014064	-3.9655	-0.0019538	-4.2509	-0.0020944	492.69909318488925	28.284	0.74688	28.364	28.08	28.826	0.080811					45	17	4	0	0	0	0.941	1	1591	1591		51.335	7.2187	2	988510	+		76937	37025	53644	53733	84902	84902	478				-0.10490030754453983
SVCHLLLL	8	Unmodified	_SVCHLLLL_					0	0	0			REV__ENST00000397070.6_1_8:38853282-38853970:-|nuORF	REV__ENST00000397070.6_1_8:38853282-38853970:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7586975097656	2	449.264956	896.515359	-0.86861	-0.00039024	4.3077	0.0019353	3.4391	0.0015451	449.26689342187456	44.191	0.57121	44.191	43.948	44.519	0					21	16	2	0	0	0	0.027866	1	4252	4252		19.36	0	1	336540	+		76938	26371	53645	53734	84903	84903					0.06296220893398186
SVCHLLLL	8	Unmodified	_SVCHLLLL_					0	0	0			REV__ENST00000397070.6_1_8:38853282-38853970:-|nuORF	REV__ENST00000397070.6_1_8:38853282-38853970:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	449.264956	896.515359	-0.96484	-0.00043347	4.8026	0.0021576	3.8377	0.0017242	449.2671103774808	44.316	0.53788	44.171	43.921	44.459	-0.14471	-0.028555	0.00049346	NaN	19.36	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394540	+		76939	26371	53645	53734							0.06296220893398186
SVCHLLLL	8	Unmodified	_SVCHLLLL_					0	0	0			REV__ENST00000397070.6_1_8:38853282-38853970:-|nuORF	REV__ENST00000397070.6_1_8:38853282-38853970:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	449.264956	896.515359	-0.29368	-0.00013194	3.9971	0.0017958	3.7035	0.0016638	449.2667435572153	44.2	0.6896	44.237	43.853	44.542	0.0369	0.037085	-0.00023027	NaN	19.36	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308620	+		76940	26371	53645	53734							0.06296220893398186
SVCLYGTATV	10	Unmodified	_SVCLYGTATV_					0	0	0		nc|ENSG00000099219|Q7Z2K6-2|ERMP1;ENSG00000099219|ENST00000339450|ERMP1	nc|ENSG00000099219|Q7Z2K6-2|ERMP1	nc|ENSG00000099219|Q7Z2K6-2|ERMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7041015625	2	507.252243	1012.48993	-0.48971	-0.00024841	-2.0971	-0.0010637	-2.5868	-0.0013121	507.2500909751225	32.214	0.3366	32.057	31.948	32.284	-0.15772					9	7	2	0	0	0	0.03519	1	2196	2196		26.693	1.2427	1	31603			76941	2063	53646	53735	84904	84904					-0.015812984196713842
SVDETLMCSFQ	11	Unmodified	_SVDETLMCSFQ_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.2791442871094	3	420.514268	1258.52097	-0.0023464	-9.8668E-07	3.8757	0.0016298	3.8733	0.0016288	420.85023207831904	29.311	0.55344	29.161	28.743	29.296	-0.14952					18	12	2	0	0	0	0.024727	1	1765	1765		29.551	13.63	1	33758			76942	10514;9536;8287	53647	53736	84905	84905					-0.09794513167753394
SVDETLMCSFQ	11	Unmodified	_SVDETLMCSFQ_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	420.514268	1258.52097	-1.2094	-0.00050856	4.8213	0.0020274	3.6119	0.0015189	420.51615990992605	29.48	0.43637	29.48	29.296	29.732	0	0.12859	0.00046703	NaN	29.551	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77030			76943	10514;9536;8287	53647	53736							-0.09794513167753394
SVDETLMCSFQ	11	Unmodified	_SVDETLMCSFQ_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;nc|ENSG00000172531|P62136-3|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB;ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	420.514268	1258.52097	-0.49085	-0.00020641	4.0438	0.0017005	3.5529	0.0014941	420.51614206812883	29.411	0.46484	29.414	29.166	29.631	0.0031357	0.062057	-0.00051379	NaN	29.551	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105110			76944	10514;9536;8287	53647	53736							-0.09794513167753394
SVDIKKVLL	9	Unmodified	_SVDIKKVLL_					0	0	0		ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	ENSG00000196396|ENST00000371621|PTPN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.225341796875	2	507.831517	1013.64848	0.42179	0.0002142	2.7056	0.001374	3.1274	0.0015882	507.83298459589986	106.8	0.28702	106.64	106.52	106.81	-0.15772					21	12	2	0	0	0	0.024477	1	13254	13254		27.882	0	1	94962			76945	9866	53648	53737	84906	84906					0.14220363550907678
SVDKMIVLT	9	Unmodified	_SVDKMIVLT_					0	0	0			REV__nc|ENSG00000010539|P98182-3|ZNF200	REV__nc|ENSG00000010539|P98182-3|ZNF200	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2955322265625	2	503.286085	1004.55762	0.01378	6.9353E-06	-2.5157	-0.0012661	-2.5019	-0.0012592	503.284656553652	64.002	0.39373	63.751	63.444	63.838	-0.25141					16	10	2	0	0	0	0.024427	1	7441	7441		34.173	7.4796	1	409820	+		76946	19907	53649	53738	84907	84907					0.0555215151110815
SVDMDGKVKP	10	Unmodified	_SVDMDGKVKP_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7428588867188	2	538.276249	1074.53795	-1.2794	-0.00068869	-1.2699	-0.00068357	-2.5494	-0.0013723	538.275445150787	61.396	0.41541	61.139	60.968	61.383	-0.25725					12	9	2	0	0	0	0.03519	1	6858	6858		44.377	5.6236	1	94956	+		76947	22797	53650	53739	84908	84908					0.0036577550035872264
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2666015625	2	561.266739	1120.51892	1.0952	0.00061467	-1.2974	-0.00072821	-0.20229	-0.00011354	561.2658927267258	59.787	1.0476	59.589	59.214	60.262	-0.19742					78	26	4	0	0	0	0.12043	3	6618	6618;6631;6645		131.03	58.675	1	6052700			76948	2643	53651	53740	84909;84910;84911	84909					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.2664794921875	2	561.266739	1120.51892	0.54846	0.00030783	-0.79605	-0.0004468	-0.24758	-0.00013896	561.2661986136237	59.708	1.1221	59.532	59.24	60.362	-0.1761					76	28	4	0	0	0	0.02722	4	6610	6602;6610;6623;6637		157.33	72.414	1	5831700			76949	2643	53651	53740	84912;84913;84914;84915	84913					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2667846679688	2	561.266739	1120.51892	-0.22934	-0.00012872	-0.067543	-3.7909E-05	-0.29688	-0.00016663	561.266591713363	59.876	1.09	59.627	59.294	60.384	-0.24842					74	27	4	0	0	0	0.066926	4	6618	6608;6618;6631;6644		143.89	69.912	1	5818700			76950	2643	53651	53740	84916;84917;84918;84919	84917					-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	561.266739	1120.51892	1.0321	0.00057929	4.4826	0.002516	5.5148	0.0030953	561.2690716127897	59.67	0.76966	59.67	59.257	60.027	0	0.044302	0.0048871	NaN	157.33	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429220			76951	2643	53651	53740							-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	561.266739	1120.51892	-0.26993	-0.0001515	5.5923	0.0031388	5.3223	0.0029872	561.2697691965251	59.873	0.54767	59.673	59.427	59.975	-0.20016	0.047155	0.0061326	NaN	157.33	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477300			76952	2643	53651	53740							-0.03651437799021551
SVDPHGFISY	10	Unmodified	_SVDPHGFISY_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	561.266739	1120.51892	-0.24224	-0.00013596	5.7443	0.0032241	5.502	0.0030881	561.2698754796945	59.576	0.74321	59.662	59.351	60.095	0.085686	0.036292	0.0063033	NaN	157.33	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455150			76953	2643	53651	53740							-0.03651437799021551
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.232421875	2	520.232561	1038.45057	-0.51063	-0.00026565	0.12842	6.6807E-05	-0.38221	-0.00019884	520.2326007385067	45.473	1.3887	45.373	45.012	46.401	-0.099445					113	38	5	0	0	0	0.015713	5	4331	4296;4307;4319;4331;4343		209.84	127.53	1	20306000			76954	855	53652	53741	84920;84921;84922;84923;84924	84923					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.232666015625	2	520.232561	1038.45057	0.14387	7.4846E-05	-0.56777	-0.00029538	-0.4239	-0.00022053	520.2322517665688	45.648	1.3021	45.395	45.019	46.321	-0.25252					104	35	5	0	0	0	0.0088851	5	4324	4313;4324;4336;4349;4361		241.3	147.29	1	19470000			76955	855	53652	53741	84925;84926;84927;84928;84929	84926					-0.06711727169567894
SVDPTQTEY	9	Unmodified	_SVDPTQTEY_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.2320556640625	2	520.232561	1038.45057	-0.46883	-0.0002439	0.11365	5.9123E-05	-0.35518	-0.00018478	520.2325902260262	45.563	1.1983	45.361	44.959	46.157	-0.20226					102	33	4	0	0	0	0.013065	5	4312	4299;4312;4324;4337;4349		200.16	107.31	1	20908000			76956	855	53652	53741	84930;84931;84932;84933;84934	84931					-0.06711727169567894
SVDSQILYY	9	Unmodified	_SVDSQILYY_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;nc|ENSG00000087111|Q96S52-2|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	ENSG00000087111|ENST00000308360|PIGS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2691650390625	2	544.268947	1086.52334	-0.21285	-0.00011585	0.40705	0.00022154	0.1942	0.0001057	544.2690578607991	70.28	0.59752	70.029	69.691	70.288	-0.25063					42	14	4	0	0	0	0.015901	2	8176	8176;8188		157.33	58.7	1	3828300			76957	1836;15303	53653	53742	84935;84936	84935					-0.01645973376139409
SVDSQILYY	9	Unmodified	_SVDSQILYY_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;nc|ENSG00000087111|Q96S52-2|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	ENSG00000087111|ENST00000308360|PIGS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.269287109375	2	544.268947	1086.52334	-0.36211	-0.00019709	0.68571	0.00037321	0.3236	0.00017613	544.269226034628	70.21	0.56436	69.996	69.688	70.253	-0.21425					43	13	4	0	0	0	0.043667	2	8161	8161;8172		131.03	54.185	1	4308100			76958	1836;15303	53653	53742	84937;84938	84937					-0.01645973376139409
SVDTDNQV	8	Unmodified	_SVDTDNQV_					0	0	0			REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7386474609375	2	439.198522	876.38249	0.49069	0.00021551	-0.26084	-0.00011456	0.22986	0.00010095	439.19876089590156	61.384	0.54081	61.455	61.203	61.743	0.071129					33	13	4	0	0	0	0.027866	1	7037	7037		16.473	10.552	1	894800	+		76959	20542	53654	53743	84939	84939					-0.0606455202955658
SVDTVTHL	8	Unmodified	_SVDTVTHL_					0	0	0			REV__chr21:41449295-41451191|131|25.78|0.57|5.49|+|2|MX1,MX1|1	REV__chr21:41449295-41451191|131|25.78|0.57|5.49|+|2|MX1,MX1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.54730224609375	2	436.229625	870.444697	-0.54874	-0.00023938	0.15688	6.8437E-05	-0.39186	-0.00017094	436.2295783155754	29.894	0.50452	29.65	29.274	29.779	-0.24415					16	11	2	0	0	0	0.027866	1	1832	1832		33.516	0	1	48833	+		76960	19422	53655	53744	84940	84940					0.004292191094350528
SVDVLYFI	8	Unmodified	_SVDVLYFI_					0	0	0		ENST00000506524.5_1_5:145862104-145889630:+|nuORF	ENST00000506524.5_1_5:145862104-145889630:+|nuORF	ENST00000506524.5_1_5:145862104-145889630:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7738342285156	2	478.260394	954.506234	0.36362	0.0001739	-4.2512	-0.0020332	-3.8876	-0.0018593	478.258381321997	68.813	0.64124	68.813	68.56	69.202	0					35	16	3	0	0	0	0.027866	1	8310	8310		74.517	29.986	1	340630			76961	15745	53656	53745	84941	84941					0.027161508087147013
SVDYDGIN	8	Unmodified	_SVDYDGIN_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.76605224609375	2	441.695615	881.376677	0.14771	6.5244E-05	-1.0335	-0.0004565	-0.88582	-0.00039126	441.6956990649319	37.303	0.15562	37.094	37.037	37.192	-0.2092					5	3	2	0	0	0	0.027866	1	2985	2985		47.916	0	1	21313			76962	4674	53657	53746	84942	84942					-0.06875650541223877
SVEEAQLAQE	10	Unmodified	_SVEEAQLAQE_					0	0	0		nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	nc|ENSG00000166938|Q8TF46-2|DIS3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.2649536132812	2	552.264393	1102.51423	1.2597	0.00069568	-0.35155	-0.00019415	0.90814	0.00050153	552.2641471778319	36.72	1.1922	36.511	36.121	37.313	-0.2092					62	29	4	0	0	0	0.98527	1	2899	2899		47.96	5.5634	1	1114900			76963	7630	53658	53747	84943	84943					-0.032923667324666894
SVEESVLLY	9	Unmodified	_SVEESVLLY_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7719116210938	2	519.771322	1037.52809	-0.18173	-9.4458E-05	0.23113	0.00012013	0.0494	2.5677E-05	519.7712396644829	73.366	0.79987	73.175	72.803	73.602	-0.19027					49	19	3	0	0	0	0.40179	1	8623	8623		65.803	7.9919	1	1373200			76964	3182	53659	53748	84944	84944					0.0108291076662681
SVEESVLLY	9	Unmodified	_SVEESVLLY_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.771322	1037.52809	-0.16835	-8.7503E-05	0.18054	9.3842E-05	0.012196	6.339E-06	519.771195404823	73.519	0.75304	73.254	72.894	73.647	-0.26479	0.011729	-0.00010969	NaN	65.803	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1193300			76965	3182	53659	53748							0.0108291076662681
SVEFHCAVPS	10	Unmodified	_SVEFHCAVPS_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2781372070312	2	538.247492	1074.48043	-1.0574	-0.00056916	0.59793	0.00032183	-0.4595	-0.00024732	538.2477820561738	84.49	0.24677	84.517	84.416	84.663	0.026558					8	5	2	0	0	0	0.03519	1	10510	10510		29.15	0	1	83184			76966	5591	53660	53749	84945	84945					-0.05383066705235251
SVEFLPKT	8	Unmodified	_SVEFLPKT_					0	0	0		ENST00000458426.5_2_2:208446548-208486541:-|nuORF	ENST00000458426.5_2_2:208446548-208486541:-|nuORF	ENST00000458426.5_2_2:208446548-208486541:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.24786376953125	2	460.758018	919.501483	0.91276	0.00042056	2.0149	0.0009284	2.9277	0.001349	460.7589860268098	70.9	0.57558	70.9	70.569	71.145	0					21	13	2	0	0	0	0.027866	1	8609	8609		17.365	0	1	129600			76967	14624	53661	53750	84946	84946					0.03851266665969888
SVEKGLPP	8	Unmodified	_SVEKGLPP_					0	0	0		BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant;BCAR1|p.P641Lfs*61|1|0.13|ENSG00000050820|chr16:75234977-75234977|G/-|frameshift_variant;nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;ENST00000564170.1_1_16:75270707-75271278:-|nuORF;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.7382507324219	2	413.737086	825.459619	0.4585	0.0001897	2.064	0.00085396	2.5225	0.0010437	413.7367865736455	75.545	0.64871	75.556	75.288	75.937	0.010368					64	17	5	0	0	0	0.845	1	9201	9201		55.504	0	1	2590500			76968	180	53662	53751	84947	84947					0.03990710977427625
SVEKLPLPPAI	11	Unmodified	_SVEKLPLPPAI_					0	0	0		ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.3536376953125	2	582.355357	1162.69616	-0.68918	-0.00040135	-2.6596	-0.0015488	-3.3488	-0.0019502	582.3536897697854	102.35	1.693	102.23	101.92	103.61	-0.12666					100	40	6	0	0	0	0.99553	1	12783	12783		37.812	8.662	1	7549000			76969	5908	53663	53752	84948	84948					0.12132017751105195
SVELEEALPV	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVELEEALPV_					1	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.2959594726562	2	564.295162	1126.57577	-0.58895	-0.00033234	0.58014	0.00032737	-0.008814	-4.9737E-06	564.2950589337884	103.58	1.4258	103.58	103.04	104.47	0					50	33	3	0	0	0	0.19121	2	13296	13287;13296		122.18	57.969	1	295090			76970	9377	53664	53753	84949;84950	84950					0.01754564966813632
SVELEEALPV	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVELEEALPV_					1	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.2957763671875	2	564.295162	1126.57577	-0.29036	-0.00016385	0.64421	0.00036353	0.35385	0.00019968	564.2949743598523	103.59	0.92677	103.59	103.1	104.02	0.0054245					52	23	4	0	0	0	0.40067	2	13246	13246;13256		98.629	26.752	1	289720			76971	9377	53664	53753	84951;84952	84951					0.01754564966813632
SVELEEALPV	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVELEEALPV_					1	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.2947998046875	2	564.295162	1126.57577	-0.36867	-0.00020804	0.35221	0.00019875	-0.016461	-9.2889E-06	564.2948391550461	103.66	0.78692	103.65	103.36	104.14	-0.0032196					44	18	4	0	0	0	0.55353	2	13218	13218;13228		82.241	34.281	1	271780			76972	9377	53664	53753	84953;84954	84953					0.01754564966813632
SVELHAVQV	9	Unmodified	_SVELHAVQV_					0	0	0		ENST00000231134.7_2_5:140517411-140517624:+|nuORF	ENST00000231134.7_2_5:140517411-140517624:+|nuORF	ENST00000231134.7_2_5:140517411-140517624:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.79266357421875	2	491.271824	980.529095	-0.52073	-0.00025582	0.68167	0.00033489	0.16094	7.9066E-05	491.27202181768934	60.958	0.52391	61.029	60.831	61.355	0.071129					23	13	3	0	0	0	0.024263	1	6929	6929		42.396	0	1	625930			76973	11237	53665	53754	84955	84955					0.038051699261814065
SVELIPAALV	10	Unmodified	_SVELIPAALV_					0	0	0			REV__ENSG00000143107|ENST00000370017|FNDC7	REV__ENSG00000143107|ENST00000370017|FNDC7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2795715332031	2	506.307875	1010.6012	-0.13197	-6.6817E-05	0.90127	0.00045632	0.7693	0.0003895	506.309815339666	49.622	1.3679	49.622	49.176	50.544	0					83	38	4	0	0	0	0.03519	1	5204	5204		21.96	3.6978	1	601750	+		76974	24200	53666	53755	84956	84956					0.09632084279905939
SVEMQWNPL	9	Unmodified	_SVEMQWNPL_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.2645874023438	2	552.263142	1102.51173	1.2597	0.00069568	1.9141	0.0010571	3.1737	0.0017527	552.2641471778319	36.72	1.1922	36.511	36.121	37.313	-0.2092					62	29	4	0	0	0	0.33245	1	2881	2881		71.296	19.96	1	1114900	+		76975	24991	53667	53756	84957	84957					-0.035424936711251576
SVEMQWNPL	9	Unmodified	_SVEMQWNPL_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.263142	1102.51173	0.12749	7.0409E-05	3.351	0.0018506	3.4785	0.001921	552.2649345931663	36.926	0.81474	36.733	36.414	37.229	-0.193	0.12106	0.00068351	NaN	71.296	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695300	+		76976	24991	53667	53756							-0.035424936711251576
SVEMQWNPL	9	Unmodified	_SVEMQWNPL_					0	0	0			REV__nc|ENSG00000155090|Q13118-2|KLF10	REV__nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.263142	1102.51173	-0.33499	-0.000185	3.5951	0.0019854	3.2601	0.0018004	552.2651106625796	36.808	0.95001	36.592	36.205	37.155	-0.21661	-0.020107	0.00095316	NaN	71.296	50	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	887130	+		76977	24991	53667	53756							-0.035424936711251576
SVENYTLTI	9	Unmodified	_SVENYTLTI_					0	0	0		ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000568777.5_1_15:72647792-72649010:-|nuORF;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2689819335938	2	520.268947	1038.52334	-0.9196	-0.00047844	0.54997	0.00028613	-0.36963	-0.00019231	520.2690974479854	75.055	0.80529	75.055	74.676	75.481	0					52	20	3	0	0	0	0.11092	1	9203	9203		108.09	3.3409	1	3019800			76978	17006	53668	53757	84958	84958					0.005620266238793192
SVENYTLTI	9	Unmodified	_SVENYTLTI_					0	0	0		ENST00000569509.5_1_15:72643558-72668681:-|nuORF;ENST00000568777.5_1_15:72647792-72649010:-|nuORF;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	ENST00000569509.5_1_15:72643558-72668681:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.268798828125	2	520.268947	1038.52334	-0.37885	-0.0001971	-0.017808	-9.2647E-06	-0.39666	-0.00020637	520.2687956382292	75.337	0.79587	75.092	74.716	75.512	-0.24455					52	20	3	0	0	0	0.072054	1	9204	9204		120.62	15.874	1	3137200			76979	17006	53668	53757	84959	84959					0.005620266238793192
SVESFVKDK	9	Unmodified	_SVESFVKDK_					0	0	0			REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7427978515625	2	519.776939	1037.53933	-0.40842	-0.00021229	-3.3399	-0.001736	-3.7484	-0.0019483	519.7775995391437	38.318	1.1082	38.099	37.535	38.643	-0.21848					83	30	5	0	0	0	0.024292	1	3088	3088		58.782	24.609	1	3158700	+		76980	24400	53669	53758	84960	84960					0.022057328607616
SVESLLSDSP	10	Unmodified	_SVESLLSDSP_					0	0	0		ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.26708984375	2	517.256037	1032.49752	-1.0388	-0.00053733	2.4877	0.0012868	1.4488	0.00074942	517.2576551290352	31.273	0.82936	31.273	30.92	31.749	0					58	19	4	0	0	0	0.03519	1	2093	2093		26.693	0	1	236810			76981	7329	53670	53759	84961	84961					-0.017428676184181313
SVESLLSDSP	10	Unmodified	_SVESLLSDSP_					0	0	0		ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.256037	1032.49752	-0.27715	-0.00014336	1.219	0.00063055	0.94188	0.00048719	517.2566766978697	31.367	0.48881	31.215	30.928	31.417	-0.15231	0.05065	-0.0011007	NaN	47.657	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111620			76982	7329	53670	53759							-0.017428676184181313
SVESPLIP	8	Unmodified	_SVESPLIP_					0	0	0			REV__ENST00000555479.1_1_14:23443954-23444322:-|nuORF	REV__ENST00000555479.1_1_14:23443954-23444322:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.84649658203125	2	421.236919	840.459284	-0.10363	-4.3652E-05	4.0262	0.001696	3.9226	0.0016523	421.23864030353894	33.391	0.35711	33.16	32.916	33.273	-0.23107					18	8	3	0	0	0	0.027866	1	2387	2387		28.254	8.8943	1	80364	+		76983	35009	53671	53760	84962	84962					0.032672912575776536
SVFEKGLRE	9	Unmodified	_SVFEKGLRE_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3162231445312	2	532.790381	1063.56621	0.15772	8.4033E-05	1.0938	0.00058277	1.2515	0.0006668	532.7907790344694	22.354	1.2577	22.165	21.628	22.886	-0.18894					47	26	3	0	0	0	0.024374	1	732	732		49.442	0	1	99718			76984	4709	53672	53761	84963	84963					0.036968414719467546
SVFGYTDNFHG	11	Unmodified	_SVFGYTDNFHG_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000469042.5_1_3:132280038-132297733:-|nuORF;ENST00000496418.5_1_3:132277817-132297733:-|nuORF	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2120666503906	3	415.184127	1242.53055	-0.5725	-0.00023769	-2.4612	-0.0010218	-3.0337	-0.0012595	415.18310742154654	27.656	0.26161	27.738	27.571	27.833	0.081293					11	6	2	0	0	0	0.024723	1	1471	1471		28.577	8.5463	1	40075			76985	10768	53673	53762	84964	84964					-0.08101240775727092
SVFILAKPTGT	11	Unmodified	_SVFILAKPTGT_					0	0	0			REV__nc|ENSG00000074416|Q99685-2|MGLL	REV__nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3297729492188	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.013	1	11233	11233		33.922	3.6039	1	17705000	+		76986	20525	53674	53763	84965	84965					0.08819158199935373
SVFKDEATV	9	Unmodified	_SVFKDEATV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.25531005859375	2	498.25584	994.497126	-0.58527	-0.00029161	-0.37439	-0.00018654	-0.95966	-0.00047816	498.25571524542835	43.458	0.99628	43.458	43.186	44.183	0					81	27	4	0	0	0	0.094442	2	4069	4069;4081		112.41	10.861	1	13141000			76987	2196	53675	53764	84966;84967	84966					-0.0003424254762194323
SVFKDEATV	9	Unmodified	_SVFKDEATV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.2554626464844	2	498.25584	994.497126	-0.81343	-0.0004053	-0.23751	-0.00011834	-1.0509	-0.00052364	498.2558453259735	43.625	0.96711	43.481	43.131	44.099	-0.14471					112	26	7	0	0	0	0.03666	2	4088	4076;4088		136.27	19.365	1	12614000			76988	2196	53675	53764	84968;84969	84969					-0.0003424254762194323
SVFKDEATV	9	Unmodified	_SVFKDEATV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2549743652344	2	498.25584	994.497126	0.20765	0.00010346	-1.1697	-0.00058282	-0.96207	-0.00047936	498.2553489142421	43.538	0.90734	43.569	43.229	44.136	0.030827					106	24	8	0	0	0	0.03201	3	4018	4010;4018;4030		139.97	27.725	1	12959000			76989	2196	53675	53764	84970;84971;84972	84971					-0.0003424254762194323
SVFKIQLFLN	10	Unmodified	_SVFKIQLFLN_					0	0	0		ENST00000529118.1_1_16:70051886-70057359:-|nuORF	ENST00000529118.1_1_16:70051886-70057359:-|nuORF	ENST00000529118.1_1_16:70051886-70057359:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.57177734375	3	403.572775	1207.69649	0.47636	0.00019225	-2.7507	-0.0011101	-2.2743	-0.00091785	403.5716517356722	42.594	1.719	42.471	42.116	43.834	-0.12299					117	45	4	0	0	0	1.0447	1	3836	3836		40.058	8.024	1	5393200			76990	16200	53676	53765	84973	84973					0.10095437470931756
SVFNHPLPPP	10	Unmodified	_SVFNHPLPPP_					0	0	0		ENSG00000082258|ENST00000264157|CCNT2	ENSG00000082258|ENST00000264157|CCNT2	ENSG00000082258|ENST00000264157|CCNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.32421875	2	552.795466	1103.57638	-0.59365	-0.00032817	4.2885	0.0023706	3.6948	0.0020425	552.7976505839506	19.812	0.42339	19.693	19.543	19.967	-0.11872					15	8	2	0	0	0	0.03519	1	473	473		17.365	2.7009	1	56111			76991	1729	53677	53766	84974	84974					0.028734491971817988
SVFPGARLL	9	Unmodified	_SVFPGARLL_					0	0	0		CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant;nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant	CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2884521484375	2	480.287277	958.560001	-0.10628	-5.1045E-05	0.91754	0.00044068	0.81126	0.00038964	480.2880051124295	65.834	0.64575	65.864	65.552	66.197	0.030098					56	16	4	0	0	0	0.32811	1	7741	7741		71.877	5.4482	1	6345600			76992	216	53678	53767	84975	84975					0.07906368031081001
SVFPGARLL	9	Unmodified	_SVFPGARLL_					0	0	0		CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant;nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant	CARM1|p.Q151Sfs*12|1|0.6|ENSG00000142453|chr19:10908142-10908142|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.287109375	2	480.287277	958.560001	0.23365	0.00011222	-0.2669	-0.00012819	-0.033245	-1.5967E-05	480.28710687765704	66.05	0.95341	65.809	65.457	66.41	-0.24145					76	23	5	0	0	0	0.19099	2	7550	7541;7550		90.37	5.4543	1	7515400			76993	216	53678	53767	84976;84977	84977					0.07906368031081001
SVFQQPLDI	9	Unmodified	_SVFQQPLDI_					0	0	0		ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-2|ETV4	ENSG00000175832|ENST00000319349|ETV4	ENSG00000175832|ENST00000319349|ETV4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.7791137695312	2	523.779482	1045.54441	-0.796	-0.00041693	0.57511	0.00030123	-0.22088	-0.00011569	523.7797122819186	78.341	1.8153	78.341	77.632	79.447	0					98	43	4	0	0	0	0.079716	1	9654	9654		117.81	13.754	1	2018900			76994	8591	53679	53768	84978	84978					0.023460367233838042
SVFQQPLDI	9	Unmodified	_SVFQQPLDI_					0	0	0		ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-2|ETV4	ENSG00000175832|ENST00000319349|ETV4	ENSG00000175832|ENST00000319349|ETV4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.7791137695312	2	523.779482	1045.54441	-0.33866	-0.00017738	0.22321	0.00011691	-0.11544	-6.0467E-05	523.7795040828491	78.192	1.6125	78.208	77.698	79.311	0.015907					103	38	4	0	0	0	0.16539	1	9583	9583		96.034	0.21844	1	1934300			76995	8591	53679	53768	84979	84979					0.023460367233838042
SVFQWVRLGL	10	Unmodified	_SVFQWVRLGL_					0	0	0			REV__ENSG00000175274|ENST00000525680|TP53I11	REV__ENSG00000175274|ENST00000525680|TP53I11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5148620605469	3	402.232752	1203.67643	0.85443	0.00034368	-0.46164	-0.00018569	0.39279	0.00015799	402.2319669322114	24.458	0.99102	24.283	23.786	24.777	-0.17484					38	22	3	0	0	0	0.03519	1	1048	1048		47.96	22.068	1	80147	+		76996	26935	53680	53769	84980	84980					0.08273686530992563
SVFRDLVIK	9	Unmodified	_SVFRDLVIK_					0	0	0		KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant;ENSG00000182481|ENST00000330459|KPNA2	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.3187255859375	2	538.826766	1075.63898	-0.22603	-0.00012179	3.5036	0.0018878	3.2775	0.001766	538.8285412692924	59.379	3.304	59.198	58.268	61.572	-0.18133					114	82	2	0	0	0	0.024367	1	6878	6878		29.17	0	1	153910			76997	9139	53681	53770	84981	84981					0.10418595265332442
SVFSFLILV	9	Unmodified	_SVFSFLILV_					0	0	0		ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.8065795898438	2	512.807511	1023.60047	-0.35239	-0.00018071	-3.9696	-0.0020356	-4.3219	-0.0022163	512.8052250840627	70.749	0.85467	70.76	70.465	71.319	0.010735					42	20	3	0	0	0	0.64155	1	8469	8469		50.025	5.9077	1	1291700			76998	8577	53682	53771	84982	84982					0.08961289630849478
SVFSNYNKNH	10	Unmodified	_SVFSNYNKNH_					0	0	0			REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	REV__nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.2862548828125	2	605.285994	1208.55744	-1.1989	-0.00072566	0.87096	0.00052718	-0.32791	-0.00019848	605.2863716977504	57.733	0.79837	57.555	57.06	57.859	-0.17775					62	20	4	0	0	0	1.0002	1	6301	6301		45.972	1.5951	1	3666200	+		76999	23390	53683	53772	84983	84983					-0.03850132164529896
SVFSPRLE	8	Unmodified	_SVFSPRLE_					0	0	0		ENST00000550735.6_1_12:112326777-112327867:+|nuORF	ENST00000550735.6_1_12:112326777-112327867:+|nuORF	ENST00000550735.6_1_12:112326777-112327867:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7525634765625	2	467.753267	933.491981	1.1614	0.00054326	-2.337	-0.0010931	-1.1756	-0.00054987	467.75205042268254	110.47	0.58345	110.47	110.27	110.86	0					36	18	3	0	0	0	1.0574	1	14049	14049		13.775	0	1	47561			77000	16591	53684	53773	84984	84984					0.022574983804133808
SVFTEIARL	9	Unmodified	_SVFTEIARL_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2975463867188	2	518.295299	1034.57605	-0.17628	-9.1363E-05	3.6713	0.0019028	3.495	0.0018114	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.39228	1	13228	13228		66.429	13.078	1	66134000			77001	7543	53685	53774	84985	84985					0.060140294773418645
SVFTVREP	8	Unmodified	_SVFTVREP_					0	0	0			REV__nc|ENSG00000239857|Q7L5D6-2|GET4	REV__nc|ENSG00000239857|Q7L5D6-2|GET4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.26898193359375	2	467.753267	933.491981	-0.26137	-0.00012226	0.54858	0.0002566	0.28721	0.00013434	467.7535007645471	56.66	0.54276	56.66	56.46	57.003	0					24	15	2	0	0	0	0.027866	1	6307	6307		30.504	0	1	311560	+		77002	28956	53686	53775	84986	84986					0.022574983804247495
SVFYTVTL	8	Unmodified	_SVFYTVTL_					0	0	0		ENST00000484580.6_1_17:26883511-26887327:-|nuORF;ENST00000492429.2_1_17:26883511-26884012:-|nuORF	ENST00000484580.6_1_17:26883511-26887327:-|nuORF	ENST00000484580.6_1_17:26883511-26887327:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2967224121094	2	465.252569	928.490584	-0.6068	-0.00028232	-3.6768	-0.0017106	-4.2836	-0.0019929	465.25068283925884	65.398	0.69673	65.147	64.864	65.561	-0.25112					49	16	4	0	0	0	0.027866	1	7480	7480		12.959	5.2689	1	1139300			77003	15303	53687	53776	84987	84987					0.023478642916757053
SVGAGLLGPP	10	Unmodified	_SVGAGLLGPP_					0	0	0		ENST00000412204.2_1:143134426-143134471:-|nuORF	ENST00000412204.2_1:143134426-143134471:-|nuORF	ENST00000412204.2_1:143134426-143134471:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.2566223144531	2	434.25036	866.486168	0.53992	0.00023446	3.1676	0.0013755	3.7075	0.00161	434.2509737017538	103.34	0.21751	103.33	103.27	103.49	-0.0046005					7	4	2	0	0	0	0.03519	1	13193	13193		29.15	0	1	131350			77004	13815	53688	53777	84988	84988					0.04758399868774177
SVGALAVVAAI	11	Unmodified	_SVGALAVVAAI_					0	0	0		ENSG00000171227|ENST00000306406|TMEM37;ENST00000465296.1_1_2:120189667-120195013:+|nuORF	ENSG00000171227|ENST00000306406|TMEM37	ENSG00000171227|ENST00000306406|TMEM37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.790283203125	2	485.800217	969.585882	-0.5762	-0.00027992	2.2307	0.0010837	1.6545	0.00080374	485.80241081148694	51.87	0.30604	51.723	51.609	51.915	-0.14735					12	8	2	0	0	0	0.024766	1	5530	5530		27.882	1.1893	1	95998			77005	8133	53689	53778	84989	84989					0.09987217482705546
SVGARKILA	9	Unmodified	_SVGARKILA_					0	0	0		ENST00000542678.5_2_12:123464691-123464859:-|nuORF	ENST00000542678.5_2_12:123464691-123464859:-|nuORF	ENST00000542678.5_2_12:123464691-123464859:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.76397705078125	2	457.792727	913.5709	0.28008	0.00012822	-0.08859	-4.0556E-05	0.1915	8.7665E-05	457.79261609009865	23.867	0.39732	23.656	23.429	23.827	-0.21059					16	8	2	0	0	0	0.023817	1	976	976		60.972	15.02	1	138830			77006	16463	53690	53779	84990	84990					0.1106577040538923
SVGARKILA	9	Unmodified	_SVGARKILA_					0	0	0		ENST00000542678.5_2_12:123464691-123464859:-|nuORF	ENST00000542678.5_2_12:123464691-123464859:-|nuORF	ENST00000542678.5_2_12:123464691-123464859:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.792727	913.5709	-0.28526	-0.00013059	0.50618	0.00023173	0.22092	0.00010114	457.79286707740545	23.742	0.37578	23.562	23.318	23.694	-0.17989	-0.030844	0.00093195	NaN	60.972	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128960			77007	16463	53690	53779							0.1106577040538923
SVGAVLPVLP	10	Unmodified	_SVGAVLPVLP_					0	0	0		ENST00000283296.11_1_6:46889590-46889638:-|nuORF	ENST00000283296.11_1_6:46889590-46889638:-|nuORF	ENST00000283296.11_1_6:46889590-46889638:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.2876281738281	2	476.29731	950.580068	0.83972	0.00039996	-0.66773	-0.00031804	0.17199	8.1919E-05	476.29682843444857	54.333	2.5186	54.333	53.196	55.715	0					120	71	2	0	0	0	0.03519	1	5933	5933		29.15	4.6304	1	261990			77008	11736	53691	53780	84991	84991					0.10280118971036245
SVGDPRTFP	9	Unmodified	_SVGDPRTFP_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7789001464844	2	488.248349	974.482145	-0.52064	-0.0002542	-0.89116	-0.00043511	-1.4118	-0.00068931	488.248444116709	24.395	0.26567	24.395	24.253	24.518	0					7	5	2	0	0	0	0.024436	1	1074	1074		23.042	6.5693	1	147020			77009	4830	53692	53781	84992	84992					-0.006116896249523052
SVGDRKFYEV	10	Unmodified	_SVGDRKFYEV_					0	0	0			REV__nc|ENSG00000125386|P78312-6|FAM193A	REV__nc|ENSG00000125386|P78312-6|FAM193A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5146789550781	3	400.540022	1198.59824	0.41901	0.00016783	-2.0005	-0.00080129	-1.5815	-0.00063346	400.53847366237216	24.813	0.43195	24.598	24.377	24.809	-0.2151					12	9	2	0	0	0	0.03519	1	1098	1098		28.577	5.1988	1	33557	+		77010	36633	53693	53782	84993	84993					0.006882091551005942
SVGDVLITEG	10	Unmodified	_SVGDVLITEG_					0	0	0			REV__nc|ENSG00000116147|Q92752-2|TNR	REV__nc|ENSG00000116147|Q92752-2|TNR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.317626953125	2	495.261122	988.507691	-0.22599	-0.00011192	-3.9349	-0.0019488	-4.1609	-0.0020607	495.25986134364877	73.396	0.57112	73.406	72.986	73.558	0.0096512					38	14	4	0	0	0	0.03519	1	8904	8904		40.778	0.20554	1	609980	+		77011	22261	53694	53783	84994	84994					0.0129774010682695
SVGDWLQAIK	10	Unmodified	_SVGDWLQAIK_					0	0	0		nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.3342895507812	2	558.806031	1115.59751	0.27215	0.00015208	0.020703	1.1569E-05	0.29286	0.00016365	558.8055591069028	51.792	1.4544	51.608	50.981	52.435	-0.18404					69	37	2	0	0	0	0.03519	1	5295	5295		25.574	0	1	694510			77012	3518	53695	53784	84995	84995					0.044334145060247465
SVGEGLTQR	9	Unmodified	_SVGEGLTQR_					0	0	0		ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7640075683594	2	473.751256	945.487959	0.40771	0.00019315	2.2646	0.0010728	2.6723	0.001266	473.75223497581067	101.96	0.54522	101.97	101.69	102.24	0.0073471					30	12	3	0	0	0	0.024427	1	13025	13025		34.173	7.4796	1	209850			77013	15848	53696	53785	84996	84996					0.013034088867129867
SVGEGLTQR	9	Unmodified	_SVGEGLTQR_					0	0	0		ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.751256	945.487959	0.49492	0.00023447	2.1121	0.0010006	2.607	0.0012351	473.75210442665593	102.01	0.57272	102.01	101.73	102.3	0	0.13414	-2.106E-05	NaN	34.173	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236880			77014	15848	53696	53785							0.013034088867129867
SVGEGLTQR	9	Unmodified	_SVGEGLTQR_					0	0	0		ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	ENST00000511959.1_1_4:5437650-5448758:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.751256	945.487959	0.29567	0.00014007	2.3132	0.0010959	2.6088	0.0012359	473.7521833060589	101.85	0.45635	101.72	101.5	101.96	-0.12666	-0.15243	0.00016945	NaN	34.173	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97655			77015	15848	53696	53785							0.013034088867129867
SVGELWTRS	9	Unmodified	_SVGELWTRS_					0	0	0		nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7949829101562	2	517.766906	1033.51926	1.9403	0.0010046	-0.46004	-0.00023819	1.4802	0.00076641	517.7661554389617	23.787	0.39351	23.596	23.4	23.794	-0.19117					15	8	3	0	0	0	0.024506	1	957	957		30.504	8.5438	1	33444			77016	9227	53697	53786	84997	84997					0.0038398192079966975
SVGELYLDD	9	Unmodified	_SVGELYLDD_					0	0	0		ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	ENSG00000214013|ENST00000318010|GANC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7705383300781	2	505.73748	1009.46041	-0.053886	-2.7252E-05	0.97502	0.0004931	0.92113	0.00046585	505.7380488344044	42.63	0.34031	42.507	42.343	42.683	-0.12299					11	8	2	0	0	0	0.024506	1	3842	3842		23.042	7.4007	1	82000			77017	10535	53698	53787	84998	84998					-0.043945391641841525
SVGFLALF	8	Unmodified	_SVGFLALF_					0	0	0			REV__nc|ENSG00000015520|Q9UHC9-2|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2662048339844	2	427.244547	852.47454	0.39747	0.00016982	-2.3911	-0.0010216	-1.9936	-0.00085177	427.2425812843574	42.551	0.40346	42.577	42.493	42.897	0.026012					14	10	2	0	0	0	0.027866	1	3857	3857		14.664	5.8418	1	100630	+		77018	19969	53699	53788	84999	84999					0.042402028454034735
SVGFLTTGII	10	Unmodified	_SVGFLTTGII_					0	0	0			REV__ENSG00000170961|ENST00000303924|HAS2	REV__ENSG00000170961|ENST00000303924|HAS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.28759765625	2	504.292225	1006.5699	-0.02691	-1.3571E-05	-0.061606	-3.1067E-05	-0.088516	-4.4638E-05	504.29197878248425	65.396	1.0089	65.433	65.081	66.089	0.037376					82	27	4	0	0	0	0.79525	1	7651	7651		60.972	2.19	1	7438800	+		77019	26526	53700	53789	85000	85000					0.06687511245786482
SVGFVALF	8	Unmodified	_SVGFVALF_					0	0	0			REV__ENSG00000069018|ENST00000513104|TRPC7	REV__ENSG00000069018|ENST00000513104|TRPC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.53045654296875	2	420.236722	838.45889	0.31248	0.00013132	2.5665	0.0010785	2.8789	0.0012098	420.23950698649713	23.051	0.23375	22.849	22.733	22.967	-0.20193					6	4	2	0	0	0	0.027866	1	882	882		13.775	0	1	9827	+		77020	20395	53701	53790	85001	85001					0.03319916328371164
SVGGDGHPE	9	Unmodified	_SVGGDGHPE_					0	0	0		ENST00000520134.1_1_5:179228412-179228937:-|nuORF	ENST00000520134.1_1_5:179228412-179228937:-|nuORF	ENST00000520134.1_1_5:179228412-179228937:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7580871582031	2	427.685581	853.35661	0.34673	0.00014829	1.5307	0.00065466	1.8774	0.00080295	427.6864048164581	41.378	0.37831	41.401	41.254	41.633	0.023006					13	10	2	0	0	0	0.024487	1	3671	3671		17.365	13.955	1	91657			77021	15973	53702	53791	85002	85002					-0.07593401481187811
SVGGFLAVVI	10	Unmodified	_SVGGFLAVVI_					0	0	0		ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7503662109375	2	481.289485	960.564418	-0.19628	-9.4469E-05	-3.0477	-0.0014668	-3.244	-0.0015613	481.2877815764456	31.159	0.87156	31.171	30.831	31.702	0.011797					37	20	3	0	0	0	0.03519	1	2008	2008		88.643	33.139	1	157550			77022	6104	53703	53792	85003	85003					0.08255832453994572
SVGGGSSGRMI	11	Unmodified	_SVGGGSSGRMI_					0	0	0			REV__BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant	REV__BTN3A3|p.E400Sfs*28|1|0.07|ENSG00000111801|chr6:26451853-26451854|-/TCCAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.27069091796875	2	504.250566	1006.48658	0.41534	0.00020944	-3.526	-0.001778	-3.1107	-0.0015685	504.2486662998716	65.659	0.41129	65.659	65.426	65.837	0					27	10	3	0	0	0	0.024355	1	7764	7764		82.75	11.455	1	752260	+		77023	19223	53704	53793	85004	85004					-0.016405484736765175
SVGGIKLK	8	Unmodified	_SVGGIKLK_					0	0	0			REV__ENSG00000163867|ENST00000357182|ZMYM6	REV__ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5148620605469	2	401.263271	800.511988	0.9723	0.00039015	-0.64412	-0.00025846	0.32819	0.00013169	401.26293154345024	24.322	0.3756	24.147	24.007	24.383	-0.17484					14	8	2	0	0	0	0.027866	1	1048	1048		12.207	0	1	94838	+		77024	25647	53705	53794	85005	85005					0.10375294111031508
SVGGIVMIVD	10	Unmodified	_SVGGIVMIVD_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.29498291015625	2	495.270435	988.526318	-0.28231	-0.00013982	-2.7571	-0.0013655	-3.0394	-0.0015053	495.26897639011014	53.074	0.53828	53.169	52.906	53.444	0.095669					25	14	2	0	0	0	0.03519	1	5642	5642		49.442	12.282	1	601890	+		77025	27189	53706	53795	85006	85006					0.031595784770274804
SVGGKVLGI	9	Unmodified	_SVGGKVLGI_					0	0	0			REV__ENSG00000151135|ENST00000280756|TMEM263	REV__ENSG00000151135|ENST00000280756|TMEM263	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	2	415.260728	828.506903	-0.13111	-5.4445E-05	0.30338	0.00012598	0.17227	7.1537E-05	415.2608282568481	20.298	1.1181	20.298	20.028	21.146	0					55	22	4	0	0	0	0.024466	1	617	617		12.207	3.9756	1	2455200	+		77026	24753	53707	53796	85007	85007					0.08578990248417995
SVGGYKKCF	9	Unmodified	_SVGGYKKCF_					0	0	0			REV__ENSG00000154080|ENST00000618847|CHST9	REV__ENSG00000154080|ENST00000618847|CHST9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2869567871094	2	494.74967	987.484787	-0.13969	-6.9112E-05	-2.0436	-0.0010111	-2.1833	-0.0010802	494.7481201844817	67.473	0.46021	67.239	67.053	67.513	-0.23376					15	10	2	0	0	0	0.024436	1	7774	7774		10.866	0	1	91706	+		77027	24931	53708	53797	85008	85008					-0.009455574916501064
SVGHARAF	8	Unmodified	_SVGHARAF_					0	0	0			REV__ENSG00000077009|ENST00000168977|NMRK2	REV__ENSG00000077009|ENST00000168977|NMRK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.25885009765625	2	422.724844	843.435135	0.076308	3.2257E-05	0.66557	0.00028135	0.74188	0.00031361	422.7251583352936	42.048	0.46341	42.048	41.825	42.289	0					21	13	2	0	0	0	0.027866	1	3818	3818		18.324	0	1	133430	+		77028	20578	53709	53798	85009	85009					0.007154956145654978
SVGHLKAHLS	10	Unmodified	_SVGHLKAHLS_					0	0	0		nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;nc|ENSG00000051108|Q15011-4|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF;ENST00000562914.1_1_16:56966069-56969248:+|nuORF	nc|ENSG00000051108|Q15011-2|HERPUD1	nc|ENSG00000051108|Q15011-2|HERPUD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7444458007812	2	524.79854	1047.58253	-0.511	-0.00026817	0.17158	9.0045E-05	-0.33942	-0.00017813	524.798037640316	39.823	0.57082	39.673	39.433	40.004	-0.1497					21	14	2	0	0	0	0.03519	1	3421	3421		24.519	8.046	1	182260			77029	1144	53710	53799	85010	85010					0.06063967428713113
SVGIAHVVW	9	Unmodified	_SVGIAHVVW_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2779541015625	2	484.271627	966.528701	-1.3467	-0.00065219	-3.0245	-0.0014647	-4.3713	-0.0021169	484.2699616756246	27.039	0.98903	27.12	26.883	27.872	0.081293					41	26	3	0	0	0	0.80658	1	1412	1412		38.806	5.2906	1	2843300			77030	3041	53711	53800	85011	85011					0.04409794996990968
SVGIEDKKM	9	Unmodified	_SVGIEDKKM_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7655029296875	2	503.765517	1005.51648	-0.019119	-9.6314E-06	-3.7589	-0.0018936	-3.778	-0.0019032	503.7635574334774	35.033	1.5652	34.817	34.006	35.571	-0.21556					111	39	5	0	0	0	0.23085	1	2609	2609		84.916	13.62	1	19901000			77031	163	53712	53801	85012	85012					0.013943904716484212
SVGIEDKKM	9	Unmodified	_SVGIEDKKM_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7644958496094	2	503.765517	1005.51648	-0.47699	-0.00024029	-3.4578	-0.0017419	-3.9348	-0.0019822	503.76372654336416	34.998	1.4219	34.786	34.196	35.618	-0.21246					102	35	5	0	0	0	0.31037	1	2595	2595		74.255	8.4519	1	18675000			77032	163	53712	53801	85013	85013					0.013943904716484212
SVGIKVEP	8	Unmodified	_SVGIKVEP_					0	0	0			REV__nc|ENSG00000006712|Q8N7H5-3|PAF1	REV__nc|ENSG00000006712|Q8N7H5-3|PAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.23016357421875	2	414.744911	827.475269	-0.93017	-0.00038578	0.96867	0.00040175	0.038502	1.5969E-05	414.7451894689955	26.969	0.6429	27.05	26.714	27.357	0.081293					30	16	3	0	0	0	0.027866	1	1350	1350		60.294	15.763	1	249770	+		77033	19841	53713	53802	85014	85014					0.05462997494475985
SVGIQLLGI	9	Unmodified	_SVGIQLLGI_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2539367675781	2	450.28166	898.548768	-0.083238	-3.748E-05	0.30279	0.00013634	0.21955	9.886E-05	450.2816420757166	37.023	0.39326	37.055	36.756	37.149	0.032269					15	9	2	0	0	0	0.024209	1	2899	2899		31.53	0	1	92015			77034	10867	53714	53803	85015	85015					0.09543545936958253
SVGIQLLGI	9	Unmodified	_SVGIQLLGI_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.28166	898.548768	1.5049	0.00067763	-2.2051	-0.00099291	-0.70019	-0.00031528	450.28039875652354	37.011	0.3489	37.011	36.846	37.195	0	0.049296	-0.0016757	NaN	31.53	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43644			77035	10867	53714	53803							0.09543545936958253
SVGIVSFVTL	10	Unmodified	_SVGIVSFVTL_					0	0	0		ENST00000301785.5_1_11:62481247-62481610:-|nuORF	ENST00000301785.5_1_11:62481247-62481610:-|nuORF	ENST00000301785.5_1_11:62481247-62481610:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2821960449219	2	511.30005	1020.58555	-1.1762	-0.00060142	1.774	0.00090706	0.59777	0.00030564	511.300621984639	55.479	0.71137	55.577	55.183	55.894	0.098015					30	18	2	0	0	0	0.03519	1	6103	6103		31.53	0	1	413300			77036	11937	53715	53804	85016	85016					0.07607797762875634
SVGKSIFLLL	10	Unmodified	_SVGKSIFLLL_					0	0	0		nc|ENSG00000197016|Q6ECI4-2|ZNF470	nc|ENSG00000197016|Q6ECI4-2|ZNF470	nc|ENSG00000197016|Q6ECI4-2|ZNF470	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7916259765625	2	538.839342	1075.66413	-0.26956	-0.00014525	-0.11075	-5.9678E-05	-0.38031	-0.00020493	538.8392547011548	73.062	0.60745	72.781	72.586	73.194	-0.28124					29	14	3	0	0	0	0.03519	1	8894	8894		36.447	4.8679	1	295910			77037	18633	53716	53805	85017	85017					0.12932650067932627
SVGKWKLHKW	10	Unmodified	_SVGKWKLHKW_					0	0	0			REV__ENST00000360448.7_1_6:159083814-159084260:+|nuORF	REV__ENST00000360448.7_1_6:159083814-159084260:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5547180175781	3	423.580264	1267.71896	2.2303	0.00094472	-0.096345	-4.081E-05	2.134	0.00090391	423.5799721184413	23.963	0.17789	23.782	23.671	23.848	-0.18089					7	3	3	0	0	0	0.03519	1	981	981		51.528	6.5056	1	16125	+		77038	30908	53717	53806	85018	85018					0.09581081659212032
SVGLALSRLK	10	Unmodified	_SVGLALSRLK_					0	0	0			REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7904052734375	2	522.332216	1042.64988	0.25897	0.00013527	3.2977	0.0017225	3.5566	0.0018577	522.3336221167879	84.586	0.80222	84.382	84.038	84.84	-0.20329					34	18	3	0	0	0	0.03519	1	10178	10178		18.262	0	1	99353	+		77039	28677	53718	53807	85019	85019					0.1302599763962462
SVGLAMSPAR	10	Unmodified	_SVGLAMSPAR_					0	0	0			REV__nc|ENSG00000120875|Q13115-2|DUSP4	REV__nc|ENSG00000120875|Q13115-2|DUSP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7850341796875	2	494.765852	987.51715	-0.85502	-0.00042303	0.64289	0.00031808	-0.21213	-0.00010495	494.76621527746863	47.392	0.76873	47.451	47.032	47.8	0.059093					45	22	4	0	0	0	0.03519	1	4693	4693		23.523	0	1	1606300	+		77040	36615	53719	53808	85020	85020					0.022892299113550507
SVGLDKRY	8	Unmodified	_SVGLDKRY_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.28125	2	469.258717	936.50288	0.07621	3.5762E-05	-0.5862	-0.00027508	-0.50999	-0.00023932	469.25844805641475	45.577	0.43903	45.325	45.055	45.494	-0.25252					22	12	2	0	0	0	0.027866	1	4307	4307		24.203	4.8428	1	317130	+		77041	25563	53720	53809	85021	85021					0.032089007547028814
SVGLEVAAQES	11	Unmodified	_SVGLEVAAQES_					0	0	0			REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF	REV__ENST00000171887.8_1_2:218667769-218668381:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2932739257812	2	545.274761	1088.53497	-0.18991	-0.00010355	1.8393	0.0010029	1.6494	0.00089937	545.2751378717977	46.08	0.44566	45.983	45.777	46.223	-0.096653					23	11	3	0	0	0	0.024741	1	4446	4446		37.812	0	1	460720	+		77042	29281	53721	53810	85022	85022					-0.00575776352820867
SVGLFILLF	9	Unmodified	_SVGLFILLF_					0	0	0			REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|54|2|anti-sense	REV__SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|54|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.76678466796875	2	504.810054	1007.60555	-0.16866	-8.5142E-05	1.8093	0.00091334	1.6406	0.00082819	504.8096566988067	66.21	0.27924	65.969	65.789	66.068	-0.24145					9	6	2	0	0	0	0.023775	1	7561	7561		47.916	0	1	112790	+		77043	37627	53722	53811	85023	85023					0.10205593493481047
SVGLPHHSH	9	Unmodified	_SVGLPHHSH_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF;ENST00000375204.2_1_9:100053158-100058044:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2715759277344	2	485.746308	969.478063	-0.21477	-0.00010432	4.471	0.0021718	4.2562	0.0020675	485.74853124449317	32.906	0.16187	32.741	32.638	32.8	-0.16565					5	3	2	0	0	0	0.024487	1	2277	2277		24.203	4.8428	1	34542			77044	13153	53723	53812	85024	85024					-0.007897343280092173
SVGLTAIMVL	10	Unmodified	_SVGLTAIMVL_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7557678222656	2	502.296453	1002.57835	-0.15686	-7.8792E-05	1.8272	0.00091781	1.6704	0.00083901	502.2977526506318	47.519	0.17129	47.422	47.35	47.521	-0.096649					6	4	2	0	0	0	0.03519	1	4652	4652		45.952	5.3793	1	103680			77045	4509	53724	53813	85025	85025					0.07716741890794765
SVGMKWLGESK	11	Unmodified	_SVGMKWLGESK_					0	0	0		ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.8879089355469	3	407.881391	1220.62234	0.16501	6.7304E-05	3.9967	0.0016302	4.1617	0.0016975	407.8831433204762	33.85	0.39131	33.65	33.404	33.795	-0.20019					15	9	2	0	0	0	0.024741	1	2436	2436		11.455	2.2428	1	158140			77046	14806	53725	53814	85026	85026					0.020857263171137674
SVGMKWLGESK	11	Unmodified	_SVGMKWLGESK_					0	0	0		ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	407.881391	1220.62234	0.011695	4.77E-06	5.588	0.0022792	5.5997	0.002284	408.21770946028107	33.516	0.26073	33.523	33.388	33.649	0.0066223	0.014667	-6.4702E-05	NaN	11.455	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102980			77047	14806	53725	53814							0.020857263171137674
SVGMKWLGESK	11	Unmodified	_SVGMKWLGESK_					0	0	0		ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	407.881391	1220.62234	1.5702	0.00064046	4.2625	0.0017386	5.8327	0.0023791	408.2164969155249	33.458	0.30398	33.515	33.35	33.654	0.056568	0.0063118	-0.0016866	NaN	11.455	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126080			77048	14806	53725	53814							0.020857263171137674
SVGMKWLGESK	11	Unmodified	_SVGMKWLGESK_					0	0	0		ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	ENST00000466295.1_1_11:67957354-67957588:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	407.881391	1220.62234	0.14028	5.7218E-05	6.6746	0.0027225	6.8149	0.0027797	407.8840623910926	33.442	0.56311	33.211	32.876	33.439	-0.23107	-0.29708	0.001265	NaN	11.455	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527560			77049	14806	53725	53814							0.020857263171137674
SVGNATIFSAR	11	Unmodified	_SVGNATIFSAR_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.7901000976562	2	561.798737	1121.58292	-0.47476	-0.00026672	2.98	0.0016742	2.5053	0.0014075	561.800255730524	48.892	0.47485	48.71	48.408	48.883	-0.18206					21	12	2	0	0	0	0.024748	1	4860	4860		9.2118	0	1	143390	+		77050	24029	53726	53815	85027	85027					0.026993423579142473
SVGRKTALHS	10	Unmodified	_SVGRKTALHS_					0	0	0		nc|ENSG00000133466|Q9BXI9-1|C1QTNF6;ENST00000493023.1_1_22:37578230-37581504:-|nuORF;ENSG00000133466|ENST00000337843|C1QTNF6	nc|ENSG00000133466|Q9BXI9-1|C1QTNF6	nc|ENSG00000133466|Q9BXI9-1|C1QTNF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.265380859375	2	528.301447	1054.58834	-0.35831	-0.0001893	-0.71219	-0.00037625	-1.0705	-0.00056555	528.3009078708996	100.29	0.60223	100.3	99.91	100.51	0.010117					20	15	2	0	0	0	0.03519	1	12785	12785		40.778	0	1	120910			77051	4711	53727	53816	85028	85028					0.06323065940364359
SVGRPCQSL	9	Unmodified	_SVGRPCQSL_					0	0	0			REV__ENST00000587176.5_1_19:55666069-55669122:-|nuORF	REV__ENST00000587176.5_1_19:55666069-55669122:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.76434326171875	2	473.742376	945.4702	-0.23146	-0.00010965	1.7307	0.00081991	1.4992	0.00071026	473.7426192908472	34.906	0.45106	34.884	34.634	35.085	-0.021763					16	11	2	0	0	0	0.023837	1	2639	2639		37.812	0	1	409650	+		77052	35623	53728	53817	85029	85029					-0.004716296397873521
SVGRRWLH	8	Unmodified	_SVGRRWLH_					0	0	0			REV__ENST00000455372.2_1_19:2736989-2737118:-|nuORF	REV__ENST00000455372.2_1_19:2736989-2737118:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.714111328125	2	505.785767	1009.55698	-0.18761	-9.4888E-05	-2.6909	-0.001361	-2.8785	-0.0014559	505.78431972864814	31.437	0.37421	31.196	30.995	31.369	-0.24109					12	9	2	0	0	0	0.027866	1	2101	2101		20.482	17.072	1	198960	+		77053	32779	53729	53818	85030	85030					0.05258537696943222
SVGSAIWNR	9	Unmodified	_SVGSAIWNR_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1;ATP8A1|p.D976Ifs*14|1|0.33|ENSG00000124406|chr4:42446615-42446615|C/-|frameshift_variant	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3149108886719	2	495.261791	988.509028	-0.045087	-2.233E-05	-3.9422	-0.0019524	-3.9873	-0.0019747	495.25968792918235	73.417	0.4809	73.417	73.072	73.553	0					23	12	2	0	0	0	0.024405	1	8980	8980		27.882	0	1	640920			77054	4046	53730	53819	85031	85031					0.014314189862147941
SVGTALRET	9	Unmodified	_SVGTALRET_					0	0	0			REV__nc|ENSG00000069702|Q03167-2|TGFBR3	REV__nc|ENSG00000069702|Q03167-2|TGFBR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2721252441406	2	467.253631	932.49271	1.4241	0.00066543	4.0523	0.0018934	5.4764	0.0025589	467.2551655059515	36.534	0.60312	36.336	36.093	36.696	-0.19829					21	14	2	0	0	0	0.024436	1	2821	2821		23.042	1.0826	1	108680	+		77055	20406	53731	53820	85032	85032					0.023762930294765283
SVGTIQKGAY	10	Unmodified	_SVGTIQKGAY_					0	0	0			REV__ENST00000358711.7_1_20:62571331-62572425:-|nuORF	REV__ENST00000358711.7_1_20:62571331-62572425:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2540283203125	2	512.277106	1022.53966	-0.47052	-0.00024103	-1.3776	-0.00070569	-1.8481	-0.00094673	512.2760185666857	54.222	0.3451	54.222	53.976	54.321	0					11	9	2	0	0	0	0.03519	1	5894	5894		32.812	0	1	173240	+		77056	28408	53732	53821	85033	85033					0.029291525806115715
SVGVEKKV	8	Unmodified	_SVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2585144042969	2	423.258185	844.501818	-0.58061	-0.00024575	0.77057	0.00032615	0.18996	8.0402E-05	423.2584790819546	27.135	1.2846	27.135	26.867	28.151	0					79	33	4	0	0	0	0.68164	2	1449	1449;1473		68.787	7.8149	1	3881700	+		77057	25017;36804	53733	53822	85034;85035	85034					0.07334686385809164
SVGVEKKV	8	Unmodified	_SVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.2582702636719	2	423.258185	844.501818	-0.48638	-0.00020586	0.65279	0.0002763	0.16641	7.0436E-05	423.2584142415599	27.098	1.3626	27.085	26.828	28.191	-0.012983					83	35	4	0	0	0	0.87148	1	1450	1450		53.351	0	1	3429800	+		77058	25017;36804	53733	53822	85036	85036					0.07334686385809164
SVGVEKKV	8	Unmodified	_SVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN;REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.25830078125	2	423.258185	844.501818	0.049741	2.1053E-05	0.0049033	2.0754E-06	0.054645	2.3129E-05	423.2580975681547	27.321	1.0311	27.165	26.887	27.918	-0.15664					65	24	4	0	0	0	0.38451	1	1486	1486		99.375	17.07	1	3341200	+		77059	25017;36804	53733	53822	85037	85037					0.07334686385809164
SVGVVLLLK	9	Unmodified	_SVGVVLLLK_					0	0	0			REV__nc|ENSG00000101307|O00241-2|SIRPB1	REV__nc|ENSG00000101307|O00241-2|SIRPB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.27923583984375	2	464.315503	926.616454	-1.7138	-0.00079575	3.4851	0.0016182	1.7712	0.00082242	464.31727389985156	51.943	0.2527	51.674	51.438	51.691	-0.26903					8	6	2	0	0	0	0.024487	1	5343	5343		31.955	6.5047	1	158750	+		77060	21214	53734	53823	85038	85038					0.15020995867769216
SVGYRPGAGGP	11	Unmodified	_SVGYRPGAGGP_					0	0	0		ENST00000467586.5_1_17:74084367-74085867:-|nuORF	ENST00000467586.5_1_17:74084367-74085867:-|nuORF	ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7492370605469	2	509.259248	1016.50394	-0.66841	-0.00034039	1.0648	0.00054227	0.39642	0.00020188	509.25957452583674	29.964	0.49238	29.973	29.839	30.331	0.0086708					19	11	2	0	0	0	0.024502	1	1889	1889		49.536	0	1	113820			77061	14844	53735	53824	85039	85039					-0.0036488487636461286
SVGYRPGAGGP	11	Unmodified	_SVGYRPGAGGP_					0	0	0		ENST00000467586.5_1_17:74084367-74085867:-|nuORF	ENST00000467586.5_1_17:74084367-74085867:-|nuORF	ENST00000467586.5_1_17:74084367-74085867:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7493896484375	2	509.259248	1016.50394	-1.0638	-0.00054177	1.2208	0.00062168	0.15691	7.9908E-05	509.25954486952855	29.704	0.44094	29.782	29.566	30.007	0.078344					17	10	2	0	0	0	0.024812	1	1805	1805		49.536	5.1589	1	168000			77062	14844	53735	53824	85040	85040					-0.0036488487636461286
SVHNPPKNRN	10	Unmodified	_SVHNPPKNRN_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	581.8023071289062	2	581.807428	1161.6003	2.3146	0.0013467	0.50278	0.00029252	2.8174	0.0016392	581.8075385555265	17.657	0.68731	17.657	17.498	18.186	0					21	13	3	0	0	0	0.03519	1	177	177		20.947	4.2295	1	165840	+		77063	27091	53736	53825	85041	85041					0.02596682683565632
SVHRVLKF	8	Unmodified	_SVHRVLKF_					0	0	0			REV__ENSG00000130741|ENST00000253039|EIF2S3	REV__ENSG00000130741|ENST00000253039|EIF2S3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.271240234375	2	493.300719	984.586885	-0.2172	-0.00010714	-1.8705	-0.00092273	-2.0877	-0.0010299	493.2996642729035	64.651	0.47312	64.448	64.144	64.617	-0.20254					13	11	2	0	0	0	0.027866	1	7376	7376		50.025	2.1089	1	122030	+		77064	23146	53737	53826	85042	85042					0.09397476642288893
SVHRVLKF	8	Unmodified	_SVHRVLKF_					0	0	0			REV__ENSG00000130741|ENST00000253039|EIF2S3	REV__ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.300719	984.586885	0.60068	0.00029632	-1.3022	-0.0006424	-0.70156	-0.00034608	493.2997393709156	64.341	0.80926	64.341	63.88	64.69	0	-0.046433	-0.00040498	NaN	50.025	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958800	+		77065	23146	53737	53826							0.09397476642288893
SVHRVLKF	8	Unmodified	_SVHRVLKF_					0	0	0			REV__ENSG00000130741|ENST00000253039|EIF2S3	REV__ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.300719	984.586885	-0.77517	-0.00038239	0.048465	2.3908E-05	-0.72671	-0.00035848	493.3003974244848	64.636	0.78442	64.373	63.901	64.686	-0.2626	-0.014237	0.00092763	NaN	50.025	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	781500	+		77066	23146	53737	53826							0.09397476642288893
SVHRVLKF	8	Unmodified	_SVHRVLKF_					0	0	0			REV__ENSG00000130741|ENST00000253039|EIF2S3	REV__ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.300719	984.586885	0.31298	0.00015439	-1.1121	-0.0005486	-0.79912	-0.00039421	493.2998041824626	64.357	0.74077	64.403	63.975	64.715	0.045502	0.015456	-0.00021739	NaN	50.025	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	796140	+		77067	23146	53737	53826							0.09397476642288893
SVHVSLAEL	9	Unmodified	_SVHVSLAEL_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4;REV__ZFHX4|p.V2359Wfs*33|1|0.05|ENSG00000091656|chr8:76853996-76853996|G/-|frameshift_variant	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2738342285156	2	477.766374	953.518196	-0.20626	-9.8542E-05	0.30795	0.00014713	0.10169	4.8586E-05	477.76634295132504	48.474	0.80817	48.321	48.091	48.9	-0.15294					48	22	3	0	0	0	0.024021	1	4883	4883		58.782	29.612	1	2098600	+		77068	20914;37796	53738	53827	85043	85043					0.0395776755190127
SVIAEYLVTP	10	Unmodified	_SVIAEYLVTP_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8173828125	2	546.30279	1090.59103	0.34897	0.00019065	0.39283	0.0002146	0.7418	0.00040525	546.3028180813418	67.374	1.1176	67.119	66.786	67.903	-0.25517					46	26	2	0	0	0	0.03519	1	7800	7800		40.778	0	1	549720	+		77069	21146	53739	53828	85044	85044					0.04935476554669549
SVIAISFYIS	10	Unmodified	_SVIAISFYIS_					0	0	0			REV__nc|ENSG00000169551|Q8WUE5-2|CT55	REV__nc|ENSG00000169551|Q8WUE5-2|CT55	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2801513671875	2	550.305332	1098.59611	-0.3187	-0.00017538	-4.0404	-0.0022235	-4.3591	-0.0023989	550.8041906468641	72.69	0.49622	72.69	72.414	72.91	0					15	11	2	0	0	0	0.03519	1	8842	8842		24.519	0	1	273370	+		77070	26378	53740	53829	85045	85045					0.05075780417269016
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2967529296875	2	525.297507	1048.58046	-1.1888	-0.00062449	-0.042932	-2.2552E-05	-1.2318	-0.00064704	525.2973193443728	80.982	0.75629	80.982	80.667	81.423	0					50	18	4	0	0	0	0.014034	5	10079	10067;10079;10091;10103;10115		166.68	70.863	1	6097900			77071	1601	53741	53830	85046;85047;85048;85049;85050	85047					0.05811493900228015
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2969970703125	2	525.297507	1048.58046	-1.06	-0.0005568	-0.49371	-0.00025934	-1.5537	-0.00081614	525.2971511216385	81.13	1.119	80.999	80.741	81.86	-0.13075					65	27	3	0	0	0	0.016758	4	10078	10066;10078;10091;10103		153.04	55.563	1	5799100			77072	1601	53741	53830	85051;85052;85053;85054	85052					0.05811493900228015
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2970581054688	2	525.297507	1048.58046	-0.75831	-0.00039834	-0.74384	-0.00039073	-1.5021	-0.00078907	525.2970066207575	80.999	0.96279	81.023	80.735	81.698	0.023911					47	23	3	0	0	0	0.03849	4	10013	9992;10001;10013;10026		134.81	49.451	1	5943700			77073	1601	53741	53830	85055;85056;85057;85058	85057					0.05811493900228015
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2972412109375	2	525.297507	1048.58046	-0.053069	-2.7877E-05	-0.64884	-0.00034084	-0.70191	-0.00036871	525.2969171685697	81.09	0.57152	80.852	80.608	81.179	-0.23784					39	13	4	0	0	0	0.14024	2	9737	9737;9748		101.6	48.249	1	1187500			77074	1601	53741	53830	85059;85060	85059					0.05811493900228015
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2974243164062	2	525.297507	1048.58046	0.22599	0.00011871	-1.8762	-0.00098555	-1.6502	-0.00086684	525.2959609605002	81.067	0.98353	80.86	80.508	81.492	-0.20632					54	23	4	0	0	0	0.17822	1	9749	9749		93.195	33.077	1	1164200			77075	1601	53741	53830	85061	85061					0.05811493900228015
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2980346679688	2	525.297507	1048.58046	-0.18574	-9.7569E-05	-1.0085	-0.00052975	-1.1942	-0.00062731	525.2965732248329	81.032	0.86768	80.889	80.616	81.483	-0.14248					49	20	4	0	0	0	0.082191	2	9718	9718;9730		116.9	23.708	1	1115800			77076	1601	53741	53830	85062;85063	85062					0.05811493900228015
SVIEQLFFV	9	Unmodified	_SVIEQLFFV_					0	0	0		nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;ENST00000506162.1_1_5:92927828-92929545:+|nuORF;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-2|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.3009033203125	2	541.30005	1080.58555	-0.4619	-0.00025003	2.8221	0.0015276	2.3602	0.0012776	541.3018035280136	101.86	0.96967	101.85	101.4	102.37	-0.0054474					47	21	3	0	0	0	0.1158	2	12965	12955;12965		107.01	15.414	1	2081100			77077	9451	53742	53831	85064;85065	85065					0.04847797762840855
SVIEQLFFV	9	Unmodified	_SVIEQLFFV_					0	0	0		nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;ENST00000506162.1_1_5:92927828-92929545:+|nuORF;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-2|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.29931640625	2	541.30005	1080.58555	0.085031	4.6028E-05	0.19926	0.00010786	0.28429	0.00015389	541.3003884773984	101.67	0.93841	101.54	101.17	102.11	-0.13156					46	21	3	0	0	0	0.12914	1	12607	12607		104.06	27.283	1	856260			77078	9451	53742	53831	85066	85066					0.04847797762840855
SVIEQLFFV	9	Unmodified	_SVIEQLFFV_					0	0	0		nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;ENST00000506162.1_1_5:92927828-92929545:+|nuORF;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-2|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2998657226562	2	541.30005	1080.58555	0.0024514	1.327E-06	-0.39871	-0.00021582	-0.39626	-0.0002145	541.2998674041178	101.67	1.4621	101.54	100.77	102.24	-0.12576					58	35	3	0	0	0	0.16638	1	12626	12626		95.815	21.56	1	951840			77079	9451	53742	53831	85067	85067					0.04847797762840855
SVIEQLFFV	9	Unmodified	_SVIEQLFFV_					0	0	0		nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;ENST00000506162.1_1_5:92927828-92929545:+|nuORF;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-2|NR2F2	nc|ENSG00000185551|P24468-2|NR2F2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2999267578125	2	541.30005	1080.58555	-0.65897	-0.0003567	0.96854	0.00052427	0.30957	0.00016757	541.3008735794612	101.74	1.248	101.57	100.84	102.09	-0.17178					43	28	3	0	0	0	0.17845	1	12613	12613		93.143	2.3666	1	810650			77080	9451	53742	53831	85068	85068					0.04847797762840855
SVIFALVW	8	Unmodified	_SVIFALVW_					0	0	0		ENST00000494587.1_1_2:172379052-172397400:+|nuORF;nc|ENSG00000071967|Q53TN4-2|CYBRD1;ENST00000468308.1_1_2:172378863-172407640:+|nuORF;ENSG00000071967|ENST00000321348|CYBRD1	ENST00000494587.1_1_2:172379052-172397400:+|nuORF	ENST00000494587.1_1_2:172379052-172397400:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.3056945800781	2	467.773471	933.53239	0.10846	5.0733E-05	-4.489	-0.0020998	-4.3806	-0.0020491	467.77112148582614	53.453	0.40565	53.194	53.039	53.444	-0.25838					18	10	2	0	0	0	0.027866	1	5584	5584		23.037	0	1	231710			77081	1461	53743	53832	85069	85069					0.06296464770832699
SVIGDRRSR	9	Unmodified	_SVIGDRRSR_					0	0	0		ENSG00000242028|ENST00000442995|HYPK;ENST00000498605.1_1_15:44092640-44093386:+|nuORF	ENSG00000242028|ENST00000442995|HYPK	ENSG00000242028|ENST00000442995|HYPK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2413940429688	2	523.296696	1044.57884	-0.63688	-0.00033328	2.2138	0.0011585	1.5769	0.00082521	523.2981497103001	30.652	0.70835	30.408	30.163	30.872	-0.24415					22	13	2	0	0	0	0.024539	1	1939	1939		14.865	0	1	655350			77082	10790	53744	53833	85070	85070					0.05833297654839953
SVIGLRNCNV	10	Unmodified	_SVIGLRNCNV_					0	0	0			REV__ENST00000564822.1_1_16:2314685-2317218:-|nuORF	REV__ENST00000564822.1_1_16:2314685-2317218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2484741210938	2	537.789858	1073.56516	-1.479	-0.00079541	2.8107	0.0015116	1.3317	0.00071615	538.2931938009523	55.781	0.18697	55.879	55.744	55.931	0.098					8	4	3	0	0	0	0.03519	1	6109	6109		32.812	0	1	67470	+		77083	30062	53745	53834	85071	85071					0.03132303831398531
SVIGSVHTW	9	Unmodified	_SVIGSVHTW_					0	0	0		ENSG00000063660|ENST00000264039|GPC1;ENST00000469694.5_1_2:241404001-241405704:+|nuORF	ENSG00000063660|ENST00000264039|GPC1	ENSG00000063660|ENST00000264039|GPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.25830078125	2	493.258717	984.50288	-1.2596	-0.0006213	1.0845	0.00053495	-0.17507	-8.6356E-05	493.2591080642125	54.048	1.0926	53.912	53.564	54.657	-0.13617					80	32	4	0	0	0	0.016146	2	5720	5720;5732		197.6	100.13	1	5494900			77084	1264	53746	53835	85072;85073	85072					0.010009007546955218
SVIGSVHTW	9	Unmodified	_SVIGSVHTW_					0	0	0		ENSG00000063660|ENST00000264039|GPC1;ENST00000469694.5_1_2:241404001-241405704:+|nuORF	ENSG00000063660|ENST00000264039|GPC1	ENSG00000063660|ENST00000264039|GPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2587890625	2	493.258717	984.50288	0.0076329	3.765E-06	-0.23427	-0.00011556	-0.22664	-0.00011179	493.2584514050481	54.221	0.99852	53.975	53.625	54.623	-0.2453					79	30	4	0	0	0	0.016871	2	5735	5735;5749		152.47	67.111	1	5814300			77085	1264	53746	53835	85074;85075	85074					0.010009007546955218
SVIGSVHTW	9	Unmodified	_SVIGSVHTW_					0	0	0		ENSG00000063660|ENST00000264039|GPC1;ENST00000469694.5_1_2:241404001-241405704:+|nuORF	ENSG00000063660|ENST00000264039|GPC1	ENSG00000063660|ENST00000264039|GPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.2579650878906	2	493.258717	984.50288	0.097536	4.811E-05	-0.43324	-0.0002137	-0.33571	-0.00016559	493.25831975650425	54.136	1.1741	53.938	53.556	54.73	-0.19739					73	33	4	0	0	0	0.03849	1	5719	5719		134.81	49.895	1	5573200			77086	1264	53746	53835	85076	85076					0.010009007546955218
SVIGSVKVLI	10	Unmodified	_SVIGSVKVLI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.E1768K|1|0.17|ENSG00000205038|chr8:109445171-109445171|G/A|missense_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3335266113281	2	507.831517	1013.64848	0.011049	5.6113E-06	3.5165	0.0017858	3.5276	0.0017914	507.83330022638233	106.87	0.43044	106.86	106.67	107.1	-0.0034866					20	13	2	0	0	0	1.0508	1	13679	13679		39.253	7.723	1	201400			77087	10401	53747	53836	85077	85077					0.14220363550907678
SVIGSVKVLI	10	Unmodified	_SVIGSVKVLI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant;PKHD1L1|p.E1768K|1|0.17|ENSG00000205038|chr8:109445171-109445171|G/A|missense_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.83306884765625	2	507.831517	1013.64848	0.29283	0.00014871	3.7039	0.001881	3.9967	0.0020297	507.8332285414215	105.13	0.47266	104.97	104.75	105.22	-0.16484					46	18	3	0	0	0	1.1333	1	13086	13086		28.081	1.3886	1	257580			77088	10401	53747	53836	85078	85078					0.14220363550907678
SVIHAPSPSRA	11	Unmodified	_SVIHAPSPSRA_					0	0	0			REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	REV__nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2698974609375	2	561.306729	1120.59891	-0.26028	-0.00014609	2.354	0.0013213	2.0937	0.0011752	561.3082244355979	26.338	0.13924	26.17	26.085	26.224	-0.16816					6	3	2	0	0	0	0.02475	1	1341	1341		28.081	17.816	1	370550	+		77089	24634	53748	53837	85079	85079					0.04343048594796528
SVIIFPFVL	9	Unmodified	_SVIIFPFVL_					0	0	0		ENSG00000197887|ENST00000641683|OR1S2;nc|ENSG00000197887|Q8NGQ3|OR1S2	ENSG00000197887|ENST00000641683|OR1S2	ENSG00000197887|ENST00000641683|OR1S2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7997436523438	2	517.817879	1033.6212	-0.16393	-8.4884E-05	-3.6831	-0.0019072	-3.8471	-0.0019921	517.8161745356628	104.69	0.41879	104.69	104.5	104.92	0					16	12	2	0	0	0	0.024466	1	13419	13419		25.45	0	1	54931			77090	10061	53749	53838	85080	85080					0.10573880010497305
SVIKEYSSK	9	Unmodified	_SVIKEYSSK_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2750854492188	2	520.784764	1039.55498	-0.15368	-8.0034E-05	-1.3093	-0.00068187	-1.463	-0.00076191	520.7842808376299	104.04	1.3429	104.04	103.75	105.09	0.0031357					61	37	3	0	0	0	0.024539	1	13378	13378		27.882	0	1	243720			77091	2544	53750	53839	85081	85081					0.036780193777985914
SVIKFAIKSN	10	Unmodified	_SVIKFAIKSN_					0	0	0			REV__DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8302612304688	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.1088	1	11169	11169		31.53	0	1	4896800	+		77092	19713;23476	53751	53840	85082	85082					0.10094577919812764
SVIKKDPK	8	Unmodified	_SVIKKDPK_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.2455749511719	2	457.78711	913.559667	-0.29105	-0.00013324	0.38073	0.0001743	0.089683	4.1056E-05	457.78720077307196	27.244	0.80863	27.002	26.701	27.509	-0.24217					36	18	3	0	0	0	0.027866	1	1458	1458		19.36	11.67	1	525850	+		77093	21813	53752	53841	85083	85083					0.09942948311231703
SVILTTPTV	9	Unmodified	_SVILTTPTV_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7774658203125	2	465.778951	929.543348	0.3767	0.00017546	-3.2562	-0.0015167	-2.8795	-0.0013412	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.85329	1	9869	9869		35.618	0	1	1283800			77094	6231	53753	53842	85084	85084					0.07575822354465345
SVIPLVEP	8	Unmodified	_SVIPLVEP_					0	0	0			REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	REV__nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.23876953125	2	427.255111	852.49567	0.22398	9.5698E-05	-3.8612	-0.0016497	-3.6372	-0.001554	427.2534263937326	32.525	0.68466	32.588	32.278	32.962	0.062885					37	17	3	0	0	0	0.027866	1	2198	2198		18.324	0	1	385880	+		77095	20350	53754	53843	85085	85085					0.0635216815427384
SVIQSYLKKLF	11	Unmodified	_SVIQSYLKKLF_					0	0	0		DYNC2H1|p.H1453Y|1|0.16|ENSG00000187240|chr11:103159006-103159006|C/T|missense_variant	DYNC2H1|p.H1453Y|1|0.16|ENSG00000187240|chr11:103159006-103159006|C/T|missense_variant	DYNC2H1|p.H1453Y|1|0.16|ENSG00000187240|chr11:103159006-103159006|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.60137939453125	3	442.599101	1324.77547	0.36102	0.00015979	4.2162	0.0018661	4.5772	0.0020259	442.60085921913367	102.42	0.6427	102.41	102.15	102.79	-0.0054474					25	14	2	0	0	0	1.0739	1	13050	13050		18.531	1.3643	1	570440			77096	678	53755	53844	85086	85086					0.12607664705228672
SVIRRKDK	8	Unmodified	_SVIRRKDK_					0	0	0			REV__nc|ENSG00000069966|O14775-3|GNB5	REV__nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2922668457031	2	501.314358	1000.61416	-0.63554	-0.00031861	-1.0571	-0.00052996	-1.6927	-0.00084857	501.3151586537789	57.406	0.22528	57.238	57.143	57.369	-0.1672					12	5	3	0	0	0	0.027866	1	6262	6262		31.955	7.7521	1	198870	+		77097	20409	53756	53845	85087	85087					0.11387960182651113
SVISVKNAS	9	Unmodified	_SVISVKNAS_					0	0	0		nc|ENSG00000154639|P78310-2|CXADR;nc|ENSG00000154639|P78310-6|CXADR;ENSG00000154639|ENST00000284878|CXADR	nc|ENSG00000154639|P78310-2|CXADR	nc|ENSG00000154639|P78310-2|CXADR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2667236328125	2	452.758549	903.502546	0.36035	0.00016315	2.0708	0.00093758	2.4312	0.0011007	452.75915733974966	21.093	0.44254	21.164	20.959	21.401	0.071487					11	8	2	0	0	0	0.024523	1	588	588		29.15	0	1	41338			77098	6420	53757	53846	85088	85088					0.046934810348602696
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2894287109375	2	515.290017	1028.56548	0.23726	0.00012226	0.096625	4.979E-05	0.33389	0.00017205	515.289784799481	70.154	0.75077	70.154	69.993	70.744	0					44	21	3	0	0	0	0.053401	4	8488	8470;8480;8488;8500		127.46	45.866	1	2546600			77099	3480	53758	53847	85089;85090;85091;85092	85091					0.05234046822897653
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.29150390625	2	515.290017	1028.56548	0.76341	0.00039338	-0.52302	-0.00026951	0.24039	0.00012387	515.2896151139531	70.523	0.91783	70.23	70	70.918	-0.29291					44	26	2	0	0	0	0.053401	4	8482	8482;8491;8499;8512		127.46	50.144	1	3784500			77100	3480	53758	53847	85093;85094;85095;85096	85093					0.05234046822897653
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2905883789062	2	515.290017	1028.56548	-0.61239	-0.00031556	0.78437	0.00040418	0.17198	8.8618E-05	515.2902878743214	70.309	0.6664	70.322	70.104	70.77	0.012421					30	17	2	0	0	0	0.016758	3	8415	8407;8415;8429		153.04	67.875	1	3033600			77101	3480	53758	53847	85097;85098;85099	85098					0.05234046822897653
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.290283203125	2	515.290017	1028.56548	0.014098	7.2648E-06	1.4939	0.00076977	1.5079	0.00077703	515.2909707733183	70.411	0.68713	70.154	69.56	70.247	-0.25712					33	16	3	0	0	0	0.053401	1	8190	8190		127.46	45.157	1	3395400			77102	3480	53758	53847	85100	85100					0.05234046822897653
SVIVSRKRP	9	Unmodified	_SVIVSRKRP_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2474365234375	2	521.330008	1040.64546	-0.91806	-0.00047861	3.2508	0.0016948	2.3328	0.0012161	521.3315378451164	83.777	0.94238	83.687	83.427	84.369	-0.090454					38	21	2	0	0	0	0.024477	1	10422	10422		27.882	0	1	456740			77103	1489	53759	53848	85101	85101					0.12676533216745156
SVKAQAEPQV	10	Unmodified	_SVKAQAEPQV_					0	0	0			REV__ENST00000559123.5_1_14:24605441-24606207:+|nuORF	REV__ENST00000559123.5_1_14:24605441-24606207:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	528.78759765625	2	528.787838	1055.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.601	1	52.454	51.954	52.954	-0.14723								0	0	0	0.60416	1	5620	5620		63.534	12.198	1		+		77104	35110	53760	53849	85102	85102					0.035565376093245504
SVKDIGVISL	10	Unmodified	_SVKDIGVISL_					0	0	0		ENSG00000184956|ENST00000421673|MUC6	ENSG00000184956|ENST00000421673|MUC6	ENSG00000184956|ENST00000421673|MUC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7724609375	2	515.810782	1029.60701	-0.70544	-0.00036387	1.0377	0.00053524	0.33223	0.00017137	515.8114927420164	66.852	0.38456	66.876	66.728	67.112	0.023911					12	8	2	0	0	0	0.03519	1	7862	7862		44.377	3.599	1	251420			77105	9387	53761	53850	85103	85103					0.09339182791586609
SVKIHTLK	8	Unmodified	_SVKIHTLK_					0	0	0		ENST00000598377.2_2_19:53715316-53715451:+|nuORF	ENST00000598377.2_2_19:53715316-53715451:+|nuORF	ENST00000598377.2_2_19:53715316-53715451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7691955566406	2	463.295102	924.575651	1.7442	0.0008081	-1.6535	-0.00076607	0.090734	4.2037E-05	463.2942454819798	63.089	0.66033	63.144	62.931	63.592	0.054104					32	17	2	0	0	0	0.027866	1	7352	7352		24.203	1.1603	1	978680			77106	17468	53762	53851	85104	85104					0.11034654548132039
SVKISNKYV	9	Unmodified	_SVKISNKYV_					0	0	0			REV__ENSG00000240771|ENST00000286494|ARHGEF25	REV__ENSG00000240771|ENST00000286494|ARHGEF25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7698364257812	2	519.303124	1036.5917	-0.48627	-0.00025252	-3.8991	-0.0020248	-4.3854	-0.0022774	519.30171123803	22.173	0.57241	22.097	21.698	22.27	-0.075296					19	11	2	0	0	0	0.024539	1	746	746		27.882	17.017	1	38973	+		77107	28963	53763	53852	85105	85105					0.07486315994378856
SVKITQVTW	9	Unmodified	_SVKITQVTW_					0	0	0		ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.302490234375	2	531.303124	1060.5917	-0.33102	-0.00017587	0.59658	0.00031697	0.26557	0.0001411	531.3032573450248	58.125	1.115	57.947	57.636	58.751	-0.17775					52	27	3	0	0	0	0.16539	2	6377	6377;6392		96.034	26.406	1	4044600			77108	3040	53764	53853	85106;85107	85106					0.06382315994369492
SVKITQVTW	9	Unmodified	_SVKITQVTW_					0	0	0		ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.3031005859375	2	531.303124	1060.5917	-0.52833	-0.00028071	0.9472	0.00050325	0.41887	0.00022255	531.3034613967866	57.992	0.97938	57.802	57.599	58.578	-0.19017					42	24	3	0	0	0	0.22379	2	6375	6375;6384		85.862	25.744	1	3745800			77109	3040	53764	53853	85108;85109	85108					0.06382315994369492
SVKITQVTW	9	Unmodified	_SVKITQVTW_					0	0	0		ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	ENST00000524510.1_1_11:119547810-119558018:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.302490234375	2	531.303124	1060.5917	0.06721	3.5709E-05	0.31171	0.00016562	0.37892	0.00020132	531.3030637278708	58.219	0.92784	57.985	57.702	58.63	-0.23363					48	22	3	0	0	0	0.079716	2	6377	6377;6393		117.81	40.493	1	4577600			77110	3040	53764	53853	85110;85111	85110					0.06382315994369492
SVKKEVKI	8	Unmodified	_SVKKEVKI_					0	0	0			REV__ENSG00000128829|ENST00000263791|EIF2AK4	REV__ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2875061035156	2	465.80276	929.590967	0.13845	6.4492E-05	-0.86731	-0.000404	-0.72886	-0.0003395	465.802438717541	93.853	0.67883	93.859	93.646	94.325	0.0059814					20	16	2	0	0	0	0.027866	1	11863	11863		30.504	8.5438	1	104300	+		77111	23010	53765	53854	85112	85112					0.12335521345323741
SVKKKVKL	8	Unmodified	_SVKKKVKL_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;nc|ENSG00000079691|Q5VZK9-3|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.32891845703125	2	465.328945	928.643337	3.4001	0.0015822	-3.1665	-0.0014735	0.23359	0.0001087	465.32732363204883	18.192	0.44807	17.949	17.726	18.175	-0.24256					18	8	3	0	0	0	0.94517	1	245	245		45.952	12.436	1	131410			77112	1672	53766	53855	85113	85113					0.17616104478940997
SVKKLKDL	8	Unmodified	_SVKKLKDL_					0	0	0		ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.7797546386719	2	465.80276	929.590967	0.54012	0.00025159	-1.0791	-0.00050264	-0.53895	-0.00025104	465.8025386888314	19.183	0.24789	19.022	18.836	19.084	-0.1608					9	4	3	0	0	0	0.027866	1	394	394		57.811	0	1	39458			77113	9977	53767	53856	85114	85114					0.12335521345301004
SVKKLKDL	8	Unmodified	_SVKKLKDL_					0	0	0		ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.80276	929.590967	1.8126	0.00084433	-1.654	-0.00077045	0.15862	7.3885E-05	465.80191505573316	19.186	0.34565	18.953	18.731	19.077	-0.23345	-0.060539	-0.00052508	NaN	57.811	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30870			77114	9977	53767	53856							0.12335521345301004
SVKKYQPLA	9	Unmodified	_SVKKYQPLA_					0	0	0			REV__ENST00000481904.5_1_6:35744395-35744569:+|nuORF	REV__ENST00000481904.5_1_6:35744395-35744569:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2964477539062	2	517.305667	1032.59678	0.10351	5.3549E-05	0.14318	7.4066E-05	0.24669	0.00012761	517.3058268461975	78.455	0.73084	78.299	77.87	78.601	-0.15592					26	16	2	0	0	0	0.024381	1	9352	9352		45.952	0	1	188630	+		77115	33467	53768	53857	85115	85115					0.08178619856994374
SVKLIKVVV	9	Unmodified	_SVKLIKVVV_					0	0	0			REV__ENST00000608490.1_1_20:485716-489204:-|nuORF	REV__ENST00000608490.1_1_20:485716-489204:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.77923583984375	2	492.844428	983.674303	-0.44733	-0.00022046	0.33657	0.00016588	-0.11075	-5.4585E-05	492.8444554309571	57.714	0.3519	57.481	57.312	57.664	-0.23363					15	8	2	0	0	0	0.024292	1	6293	6293		25.574	0	1	214890	+		77116	35971	53769	53858	85116	85116					0.18181257793185068
SVKLKKSE	8	Unmodified	_SVKLKKSE_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2250061035156	2	459.784567	917.554582	-0.63406	-0.00029153	0.54034	0.00024844	-0.093716	-4.3089E-05	459.7845441906886	26.628	0.35169	26.465	26.271	26.622	-0.16331					13	8	2	0	0	0	0.027866	1	1385	1385		31.53	4.8369	1	121970	+		77117	25493	53770	53859	85117	85117					0.09250644448616185
SVKLRELL	8	Unmodified	_SVKLRELL_					0	0	0			REV__ENSG00000139988|ENST00000551171|RDH12	REV__ENSG00000139988|ENST00000551171|RDH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2953186035156	2	479.30821	956.601866	-0.22914	-0.00010983	0.27744	0.00013298	0.048301	2.3151E-05	479.30818148622205	24.493	0.54784	24.318	23.963	24.511	-0.17484					26	12	3	0	0	0	0.027866	1	1033	1033		79.451	33.499	1	358970	+		77118	23980	53771	53860	85118	85118					0.12182923719615246
SVKLRGSSL	9	Unmodified	_SVKLRGSSL_					0	0	0		WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;ENSG00000166483|ENST00000450114|WEE1;ENST00000524549.1_1_11:9597437-9598815:+|nuORF;SWAP70-WEE1|1|fusion	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant;SWAP70-WEE1|1|fusion	WEE1|p.N585Kfs*53|1|0.15|ENSG00000166483|chr11:9586824-9586824|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.76947021484375	2	473.787641	945.56073	-0.17071	-8.088E-05	0.73772	0.00034952	0.56701	0.00026864	473.7891559255738	29.986	0.20762	29.742	29.612	29.82	-0.24415					6	4	2	0	0	0	0.019436	1	1876	1876		118.74	56.636	1	40041			77119	38154;38045	53772	53861	85119	85119					0.08577162680148831
SVKSKKSS	8	Unmodified	_SVKSKKSS_					0	0	0			REV__ENST00000560957.1_1_15:86225432-86228206:+|nuORF	REV__ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.77508544921875	2	425.753267	849.491981	-0.22661	-9.6481E-05	-3.3903	-0.0014434	-3.6169	-0.0015399	425.75137595946217	43.338	0.15039	43.101	43.024	43.174	-0.23736					5	3	2	0	0	0	0.027866	1	3953	3953		3.41	0	1	24830	+		77120	35160	53773	53862	85120	85120					0.06121498380423418
SVKTHFSM	8	Oxidation (M)	_SVKTHFSM(Oxidation (M))_		SVKTHFSM(1)		SVKTHFSM(110)	0	0	1		ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.73150634765625	2	476.731477	951.448402	0.43634	0.00020802	-0.21708	-0.00010349	0.21926	0.00010453	476.73129171487903	23.959	1.1675	23.743	23.425	24.592	-0.2151					46	26	3	0	0	0	0.29644	1	1010	1010		113.41	44.927	1	251900			77121	12016	53774	53863	85121	85121		472			-0.02926434388348298
SVKTHFSM	8	Oxidation (M)	_SVKTHFSM(Oxidation (M))_					0	0	1		ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	476.731477	951.448402	-0.19879	-9.4771E-05	0.56353	0.00026865	0.36474	0.00017388	476.73166741910165	23.84	0.89625	23.66	23.395	24.291	-0.17989	-0.020585	0.0011815	NaN	113.41	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265490			77122	12016	53774	53863				472			-0.02926434388348298
SVKTHFSM	8	Oxidation (M)	_SVKTHFSM(Oxidation (M))_					0	0	1		ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	476.731477	951.448402	1.9353	0.00092261	-1.7816	-0.00084935	0.15366	7.3257E-05	476.73061650203675	23.829	0.74335	23.638	23.36	24.104	-0.19117	-0.042644	-0.0010545	NaN	113.41	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294150			77123	12016	53774	53863				472			-0.02926434388348298
SVKTHFSM	8	Unmodified	_SVKTHFSM_					0	0	0		ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.7332763671875	2	468.73402	935.453487	-0.025753	-1.2071E-05	-0.021593	-1.0122E-05	-0.047346	-2.2193E-05	468.7337621219588	33.237	0.67368	33.037	32.73	33.404	-0.20019					42	16	4	0	0	0	0.5947	1	2359	2359		76.774	21.27	1	1188600			77124	12016	53774	53864	85122	85122					-0.01682130525739467
SVKTHFSM	8	Unmodified	_SVKTHFSM_					0	0	0		ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.73402	935.453487	-0.071221	-3.3384E-05	0.57051	0.00026742	0.49929	0.00023403	468.7337428057733	33.177	0.97512	32.946	32.503	33.478	-0.23107	-0.028621	0.00027065	NaN	76.774	66	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	773830			77125	12016	53774	53864							-0.01682130525739467
SVKTHFSM	8	Unmodified	_SVKTHFSM_					0	0	0		ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	ENST00000307897.9_1_15:66801186-66806347:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	468.73402	935.453487	-0.92537	-0.00043375	0.43528	0.00020403	-0.49008	-0.00022972	468.734044404673	33.107	0.76509	32.941	32.597	33.362	-0.16565	-0.033319	0.00014388	NaN	76.774	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876560			77126	12016	53774	53864							-0.01682130525739467
SVLCSMLLSS	10	Unmodified	_SVLCSMLLSS_					0	0	0			REV__ENST00000570883.5_1_17:5329514-5331594:+|nuORF	REV__ENST00000570883.5_1_17:5329514-5331594:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2615356445312	2	520.261753	1038.50895	-0.45962	-0.00023912	0.36776	0.00019133	-0.091859	-4.7791E-05	520.2618713208313	22.784	0.96893	22.709	22.363	23.332	-0.075296					77	21	6	0	0	0	0.62431	1	817	817		74.255	3.4388	1	5969800	+		77127	35397	53775	53865	85123	85123					-0.008760851202850972
SVLDWYQI	8	Unmodified	_SVLDWYQI_					0	0	0		ENST00000518421.5_1_8:42027597-42027738:+|nuORF	ENST00000518421.5_1_8:42027597-42027738:+|nuORF	ENST00000518421.5_1_8:42027597-42027738:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.30035400390625	2	512.260925	1022.5073	0.095616	4.898E-05	-1.6302	-0.00083509	-1.5346	-0.00078611	512.2600144937135	70.97	0.22183	70.698	70.614	70.836	-0.27185					7	4	2	0	0	0	0.027866	1	8274	8274		12.959	0	1	176540			77128	15929	53776	53866	85124	85124					-0.0030563482238221695
SVLEVAVTL	9	Unmodified	_SVLEVAVTL_					0	0	0			REV__ENSG00000188996|ENST00000380907|HUS1B	REV__ENSG00000188996|ENST00000380907|HUS1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.28826904296875	2	465.778951	929.543348	-1.1487	-0.00053502	1.0596	0.00049355	-0.089044	-4.1475E-05	465.77921072808454	62.055	0.43472	62.055	61.682	62.117	0					14	11	2	0	0	0	0.024205	1	7162	7162		35.618	0	1	375510	+		77129	28085	53777	53867	85125	85125					0.07575822354476713
SVLFEYRA	8	Unmodified	_SVLFEYRA_					0	0	0		ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000575192.1_1_17:4877670-4880473:-|nuORF;ENST00000572326.1_1_17:4876509-4881847:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.8053894042969	2	492.761092	983.507631	0.27764	0.00013681	0.87964	0.00043345	1.1573	0.00057026	492.761048785893	59.73	0.47709	59.53	59.318	59.795	-0.20016					20	12	2	0	0	0	0.027866	1	6835	6835		12.959	2.6939	1	127940			77130	2904	53778	53868	85126	85126					0.0152178489746575
SVLFPEPLTW	10	Unmodified	_SVLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	594.8187255859375	2	594.818607	1187.62266	0.12736	7.5755E-05	-0.12605	-7.4979E-05	0.0013048	7.7611E-07	594.8185256306657	99.595	0.63173	99.46	99.157	99.788	-0.13526					50	15	4	0	0	0	0.21865	4	12348	12325;12335;12348;12360		118.74	51.249	1	457630			77131	5421	53779	53869	85127;85128;85129;85130	85129					0.03635469308596839
SVLFPEPLTW	10	Unmodified	_SVLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.8187866210938	2	594.818607	1187.62266	0.2052	0.00012206	-0.17292	-0.00010286	0.03228	1.9201E-05	594.8184958173847	99.585	1.0446	99.461	98.711	99.755	-0.12459					65	27	4	0	0	0	0.31896	4	12356	12335;12348;12356;12367		107.01	51.924	1	503600			77132	5421	53779	53869	85131;85132;85133;85134	85133					0.03635469308596839
SVLFPEPLTW	10	Unmodified	_SVLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.8189086914062	2	594.818607	1187.62266	-0.396	-0.00023555	0.28242	0.00016799	-0.11358	-6.7562E-05	594.8187815710276	99.688	0.67593	99.517	99.115	99.791	-0.17085					51	17	4	0	0	0	0.48123	4	12350	12327;12338;12350;12359		90.37	40.928	1	474210			77133	5421	53779	53869	85135;85136;85137;85138	85137					0.03635469308596839
SVLGPILGSI	10	Unmodified	_SVLGPILGSI_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.75653076171875	2	478.294768	954.574983	-0.26274	-0.00012567	0.89771	0.00042937	0.63497	0.0003037	478.2949975011473	57.968	0.46194	58.059	57.835	58.297	0.091217					23	12	2	0	0	0	0.03519	1	6504	6504		30.318	12.85	1	397660	+		77134	23943	53780	53870	85139	85139					0.09587815108409359
SVLGPILGSI	10	Unmodified	_SVLGPILGSI_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	478.294768	954.574983	0.80456	0.00038481	-0.076574	-3.6625E-05	0.72798	0.00034819	478.2944610236966	58.042	0.46974	58.042	57.872	58.342	0	-0.035315	-0.00056685	NaN	30.318	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641870	+		77135	23943	53780	53870							0.09587815108409359
SVLGPILGSI	10	Unmodified	_SVLGPILGSI_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	478.294768	954.574983	-0.50647	-0.00024224	0.90344	0.00043211	0.39697	0.00018987	478.29509824366045	58.305	0.39265	58.13	57.968	58.36	-0.1749	0.053297	0.00037063	NaN	30.318	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276060	+		77136	23943	53780	53870							0.09587815108409359
SVLGVRPK	8	Unmodified	_SVLGVRPK_					0	0	0			REV__ENST00000368352.9_1_1:155292852-155294901:+|nuORF	REV__ENST00000368352.9_1_1:155292852-155294901:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7851257324219	2	428.27417	854.533787	-0.2799	-0.00011988	0.20484	8.773E-05	-0.075058	-3.2146E-05	428.27421103590893	26.808	0.48796	26.651	26.314	26.802	-0.15664					14	11	2	0	0	0	0.027866	1	1399	1399		7.1934	0	1	104240	+		77137	29948	53781	53871	85140	85140					0.1007009885960315
SVLIEGYAPP	10	Unmodified	_SVLIEGYAPP_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2776489257812	2	523.281857	1044.54916	0.3673	0.0001922	-1.8947	-0.00099145	-1.5274	-0.00079925	523.2808937477758	56.865	0.38176	56.663	56.365	56.747	-0.20209					11	9	2	0	0	0	0.03519	1	6142	6142		35.618	5.1146	1	189380			77138	6160	53782	53872	85141	85141					0.02866920866131295
SVLIKKLGT	9	Unmodified	_SVLIKKLGT_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2436828613281	2	479.81841	957.622267	-0.78858	-0.00037838	0.72118	0.00034604	-0.067396	-3.2338E-05	479.818620590038	40.009	0.85538	40.032	39.807	40.663	0.023006					32	23	3	0	0	0	0.024515	1	3511	3511		35.152	15.792	1	241210			77139	5269	53783	53873	85142	85142					0.14176094379422466
SVLIKKLGT	9	Unmodified	_SVLIKKLGT_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	479.81841	957.622267	0.71007	0.00034071	-1.1146	-0.00053481	-0.40453	-0.0001941	479.8176876253498	40.072	0.33167	40.072	39.915	40.247	0	-0.0090547	-0.0011845	NaN	35.152	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100520			77140	5269	53783	53873							0.14176094379422466
SVLIKKLGT	9	Unmodified	_SVLIKKLGT_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.81841	957.622267	0.080731	3.8736E-05	-0.098219	-4.7127E-05	-0.017488	-8.3909E-06	479.81832997022326	40.251	0.30437	40.139	39.904	40.208	-0.11222	0.058017	-0.00020919	NaN	35.152	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143110			77141	5269	53783	53873							0.14176094379422466
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.2562561035156	2	433.255111	864.49567	0.5502	0.00023838	-0.69107	-0.00029941	-0.14087	-6.1032E-05	433.2552087574602	102.85	2.7518	102.85	102.46	105.21	-0.0046005					129	72	2	0	0	0	0.95417	1	13204	13204		44.531	0	1	237570000			77142	18537	53784	53874	85143	85143					0.058001681542691585
SVLISALII	9	Unmodified	_SVLISALII_					0	0	0		nc|ENSG00000164756|Q8IWU4-2|SLC30A8;ENSG00000164756|ENST00000456015|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.25341796875	2	464.807511	927.600469	0.50635	0.00023536	-0.11918	-5.5397E-05	0.38717	0.00017996	464.80726956369494	78.216	0.59642	77.984	77.75	78.346	-0.23141					28	13	3	0	0	0	0.024412	1	9375	9375		31.955	0	1	275410			77143	7319	53785	53875	85144	85144					0.1337728963084146
SVLITTLDL	9	Unmodified	_SVLITTLDL_					0	0	0			REV__ENSG00000220008|ENST00000698372|LINGO3	REV__ENSG00000220008|ENST00000698372|LINGO3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7909851074219	2	487.792058	973.569563	-0.4369	-0.00021311	-2.5541	-0.0012459	-2.991	-0.001459	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.62163	1	10420	10420		51.335	51.335	1	2003200	+		77144	28827	53786	53876	85145	85145					0.08172091525955238
SVLLGAWQ	8	Unmodified	_SVLLGAWQ_					0	0	0		ENSG00000005001|ENST00000161006|PRSS22;ENST00000575164.1_1_16:2903096-2905944:-|nuORF;ENST00000572061.1_1_16:2904310-2905920:-|nuORF	ENSG00000005001|ENST00000161006|PRSS22	ENSG00000005001|ENST00000161006|PRSS22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.8812255859375	2	437.245078	872.475603	-0.16141	-7.0577E-05	-4.3516	-0.0019027	-4.513	-0.0019733	437.2431011208905	40.49	0.40088	40.265	40.041	40.442	-0.225					15	10	2	0	0	0	0.027866	1	3466	3466		60.294	6.9425	1	328880			77145	755	53787	53877	85146	85146					0.034264172143252836
SVLLGAWQ	8	Unmodified	_SVLLGAWQ_					0	0	0		ENSG00000005001|ENST00000161006|PRSS22;ENST00000575164.1_1_16:2903096-2905944:-|nuORF;ENST00000572061.1_1_16:2904310-2905920:-|nuORF	ENSG00000005001|ENST00000161006|PRSS22	ENSG00000005001|ENST00000161006|PRSS22	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	437.245078	872.475603	-0.67297	-0.00029425	-3.5727	-0.0015621	-4.2457	-0.0018564	437.24337072030386	40.36	0.43538	40.21	40.004	40.44	-0.1497	-0.042484	0.00061769	NaN	60.294	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339090			77146	755	53787	53877							0.034264172143252836
SVLLHISKL	9	Unmodified	_SVLLHISKL_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.32403564453125	2	505.32386	1008.63317	-0.75385	-0.00038094	-0.27713	-0.00014004	-1.031	-0.00052098	505.324085613359	79.222	5.1637	79.05	78.611	83.775	-0.17226					329	123	6	0	0	0	0.5973	1	9749	9749		52.937	5.2794	1	92209000			77147	4772	53788	53878	85147	85147					0.12919496753693238
SVLLHISKL	9	Unmodified	_SVLLHISKL_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3238525390625	2	505.32386	1008.63317	0.12083	6.106E-05	-0.87121	-0.00044024	-0.75037	-0.00037918	505.32350651286185	79.073	3.4594	78.842	78.346	81.805	-0.23141					204	82	5	0	0	0	0.40693	2	9424	9424;9435		65.465	10.689	1	35664000			77148	4772	53788	53878	85148;85149	85148					0.12919496753693238
SVLLHISKL	9	Unmodified	_SVLLHISKL_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.3238830566406	2	505.32386	1008.63317	-0.071224	-3.5991E-05	-0.74214	-0.00037502	-0.81337	-0.00041101	505.32356722396315	78.994	3.687	78.843	78.432	82.119	-0.15051					219	87	6	0	0	0	0.74711	1	9474	9474		42.864	3.6114	1	35565000			77149	4772	53788	53878	85150	85150					0.12919496753693238
SVLLNDVE	8	Unmodified	_SVLLNDVE_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.726806640625	2	444.737283	887.460012	0.11305	5.0275E-05	1.8002	0.00080061	1.9132	0.00085088	444.73722358148615	38.859	0.14028	38.633	38.562	38.702	-0.2257					5	3	2	0	0	0	0.027866	1	3220	3220		3.41	0	1	83157	+		77150	20097	53789	53879	85151	85151					0.011780859066220728
SVLLVPRAR	9	Unmodified	_SVLLVPRAR_					0	0	0		ENST00000380773.8_2_6:2765705-2765777:+|nuORF	ENST00000380773.8_2_6:2765705-2765777:+|nuORF	ENST00000380773.8_2_6:2765705-2765777:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.82440185546875	2	505.827101	1009.63965	-0.57001	-0.00028833	1.6733	0.00084642	1.1033	0.0005581	505.82774770641845	43.043	0.51013	43.043	42.786	43.296	0					35	13	3	0	0	0	0.024457	1	4001	4001		21.96	13.138	1	1144400			77151	13322	53790	53880	85152	85152					0.13521434705069169
SVLMRRDSDSE	11	Unmodified	_SVLMRRDSDSE_					0	0	0		ENST00000489621.1_1_3:101431822-101432032:+|nuORF	ENST00000489621.1_1_3:101431822-101432032:+|nuORF	ENST00000489621.1_1_3:101431822-101432032:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.720458984375	3	432.206714	1293.59831	0.22726	9.8224E-05	-2.8753	-0.0012427	-2.648	-0.0011445	432.20515848086575	31.04	0.49976	30.888	30.468	30.968	-0.15231					17	11	2	0	0	0	0.024734	1	1973	1973		27.644	0	1	50449			77152	15415	53791	53881	85153	85153					-0.03674158907210767
SVLNSHGPF	9	Unmodified	_SVLNSHGPF_					0	0	0		ENSG00000158711|ENST00000357992|ELK4	ENSG00000158711|ENST00000357992|ELK4	ENSG00000158711|ENST00000357992|ELK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2434387207031	2	479.243067	956.47158	0.64164	0.0003075	-0.45564	-0.00021836	0.186	8.9138E-05	479.2427582608405	40.445	1.3816	40.332	39.715	41.097	-0.11223					88	37	4	0	0	0	0.53979	1	3539	3539		56.721	0	1	2871200			77153	6695	53792	53882	85154	85154					-0.008396722793804656
SVLPINAAKF	10	Unmodified	_SVLPINAAKF_					0	0	0			REV__ENSG00000128655|ENST00000286063|PDE11A	REV__ENSG00000128655|ENST00000286063|PDE11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2825317382812	2	530.313492	1058.61243	-1.3284	-0.00070446	3.1102	0.0016494	1.7818	0.00094493	530.3165838373753	39.586	0.31241	39.487	39.304	39.616	-0.098751					9	8	2	0	0	0	0.03519	1	3421	3421		42.396	13.247	1	88248	+		77154	23004	53793	53883	85155	85155					0.08546906374022001
SVLQKLAASI	10	Unmodified	_SVLQKLAASI_					0	0	0		ENST00000568340.5_1_16:65038863-65087823:-|nuORF	ENST00000568340.5_1_16:65038863-65087823:-|nuORF	ENST00000568340.5_1_16:65038863-65087823:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.2659912109375	2	515.318774	1028.623	0.10812	5.5714E-05	1.5301	0.00078848	1.6382	0.0008442	515.3196887404902	74.202	0.8762	73.943	73.701	74.577	-0.25887					36	20	2	0	0	0	0.03519	1	9036	9036		59.931	0	1	1424700			77155	16978	53794	53884	85156	85156					0.1098288902846889
SVLQRKRA	8	Unmodified	_SVLQRKRA_					0	0	0			REV__RELN|p.G1113R|1|0.15|ENSG00000189056|chr7:103596658-103596658|C/T|missense_variant	REV__RELN|p.G1113R|1|0.15|ENSG00000189056|chr7:103596658-103596658|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2738952636719	2	479.30125	956.587947	0.38043	0.00018234	2.6399	0.0012653	3.0203	0.0014476	479.3023533084985	60.294	0.74138	60.294	59.914	60.656	0					39	19	3	0	0	0	0.027866	1	6904	6904		31.955	6.5047	1	515120	+		77156	37433	53795	53885	85157	85157					0.10791691011172588
SVLQWLSD	8	Unmodified	_SVLQWLSD_					0	0	0		ENST00000589900.5_1_19:10449374-10449416:-|nuORF	ENST00000589900.5_1_19:10449374-10449416:-|nuORF	ENST00000589900.5_1_19:10449374-10449416:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2838134765625	2	474.245275	946.475997	-0.4118	-0.00019529	0.19832	9.4055E-05	-0.21347	-0.00010124	474.2452018196592	53.862	0.50223	53.665	53.387	53.889	-0.19739					36	15	3	0	0	0	0.027866	1	5617	5617		76.774	12.567	1	1182100			77157	17318	53796	53886	85158	85158					0.0006179214351504925
SVLSENNCV	9	Unmodified	_SVLSENNCV_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2630615234375	2	482.723849	963.433146	-0.6108	-0.00029485	0.38353	0.00018514	-0.22728	-0.00010971	482.72405302884783	36.289	2.4564	36.327	35.15	37.606	0.038044					86	65	2	0	0	0	0.024374	1	2731	2731		40.778	2.9666	1	198840	+		77158	22206	53797	53887	85159	85159					-0.05003345976217588
SVLSKAKI	8	Unmodified	_SVLSKAKI_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.2757263183594	2	423.276378	844.538203	0.36652	0.00015514	-3.7091	-0.00157	-3.3425	-0.0014148	423.2747144936764	87.899	0.9429	87.762	87.289	88.232	-0.13744					51	22	3	0	0	0	1.0338	1	10683	10683		31.955	0.42505	1	872390			77159	722	53798	53888	85160	85160					0.10971563282521402
SVLSKLAK	8	Unmodified	_SVLSKLAK_					0	0	0			REV__ENSG00000257138|ENST00000547270|TAS2R38	REV__ENSG00000257138|ENST00000547270|TAS2R38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2750549316406	2	423.276378	844.538203	0.046932	1.9865E-05	-3.3619	-0.001423	-3.315	-0.0014032	423.2748331715636	87.722	1.1912	87.722	87.406	88.597	0					78	28	4	0	0	0	1.0574	1	11044	11044		17.365	0	1	3178300	+		77160	29086	53799	53889	85161	85161					0.10971563282521402
SVLSRVSH	8	Unmodified	_SVLSRVSH_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.7513122558594	2	442.751059	883.487565	0.37377	0.00016549	-0.1382	-6.1189E-05	0.23557	0.0001043	442.7508836059584	24.85	0.65917	24.928	24.594	25.253	0.078346					30	14	3	0	0	0	0.91239	1	1070	1070		50.025	5.9077	1	483500			77161	2864	53800	53890	85162	85162					0.04116033957518539
SVLSRVSH	8	Unmodified	_SVLSRVSH_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.751059	883.487565	-0.51671	-0.00022877	0.78907	0.00034936	0.27236	0.00012059	442.7512652303476	24.899	0.64044	24.899	24.608	25.248	0	-0.018626	0.00023045	NaN	50.025	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458940			77162	2864	53800	53890							0.04116033957518539
SVLSRVSH	8	Unmodified	_SVLSRVSH_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.751059	883.487565	-0.90927	-0.00040258	1.0716	0.00047445	0.16233	7.1871E-05	442.75140575883313	24.96	0.64722	24.925	24.591	25.238	-0.034395	0.0080544	0.00048064	NaN	50.025	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474210			77163	2864	53800	53890							0.04116033957518539
SVLSTVWL	8	Unmodified	_SVLSTVWL_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2686462402344	2	452.760561	903.506569	-0.22129	-0.00010019	-0.85711	-0.00038807	-1.0784	-0.00048825	452.75999782275136	21.245	0.34382	21.155	21.01	21.354	-0.090094					9	6	2	0	0	0	0.027866	1	629	629		25.45	0	1	20427	+		77164	26890	53801	53891	85163	85163					0.0509557052856735
SVLTLLFSGL	10	Unmodified	_SVLTLLFSGL_					0	0	0		nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2960815429688	2	525.3157	1048.61685	-1.1146	-0.00058553	-0.19922	-0.00010465	-1.3138	-0.00069018	525.3153492633666	80.945	1.3052	80.793	80.217	81.522	-0.15168					48	31	2	0	0	0	0.03519	1	10056	10056		40.778	11.629	1	242680			77165	6448	53802	53892	85164	85164					0.09448370796940253
SVLTQPPSV	9	Unmodified	_SVLTQPPSV_					0	0	0		nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36;nc|ENSG00000211644|P01701|IGLV1-51;nc|ENSG00000211653|P01703|IGLV1-40;nc|ENSG00000211645|A0A075B6I6|IGLV1-50	nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.26116943359375	2	464.260925	926.507297	1.0017	0.00046505	-0.86484	-0.00040151	0.13686	6.3537E-05	464.2603591104738	59.984	1.0906	59.787	59.339	60.429	-0.19742					60	27	3	0	0	0	0.18994	1	6648	6648		90.601	8.3603	1	3684400			77166	18684	53803	53893	85165	85165					0.04110365177609765
SVLTQPPSV	9	Unmodified	_SVLTQPPSV_					0	0	0		nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36;nc|ENSG00000211644|P01701|IGLV1-51;nc|ENSG00000211653|P01703|IGLV1-40;nc|ENSG00000211645|A0A075B6I6|IGLV1-50	nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.26104736328125	2	464.260925	926.507297	0.20188	9.3723E-05	0.035997	1.6712E-05	0.23787	0.00011044	464.2607577407201	59.961	1.1605	59.785	59.361	60.521	-0.1761					69	29	4	0	0	0	0.22379	1	6668	6668		85.862	13.984	1	3588100			77167	18684	53803	53893	85166	85166					0.04110365177609765
SVLVCLVL	8	Unmodified	_SVLVCLVL_					0	0	0		ENST00000525451.6_2_11:65622395-65622491:-|nuORF	REV__ENSG00000165355|ENST00000298097|FBXO33	REV__ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5547180175781	2	423.261882	844.509211	2.3201	0.00098199	2.2366	0.00094668	4.5567	0.0019287	423.2626759279209	24.228	0.65716	24.047	23.804	24.461	-0.18089					33	14	4	0	0	0	0.027866	1	981	981		4.3163	0	1	387320			77168	25877	53804	53894	85167	85167					0.08073702661852167
SVLYGYSLI	9	Unmodified	_SVLYGYSLI_					0	0	0		ENST00000294661.8_1_1:85717306-85717453:-|nuORF	ENST00000294661.8_1_1:85717306-85717453:-|nuORF	ENST00000294661.8_1_1:85717306-85717453:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3155517578125	2	507.778951	1013.54335	-0.19872	-0.00010091	-1.3177	-0.0006691	-1.5164	-0.00077001	507.777715037745	68.965	0.22362	68.981	68.83	69.053	0.015129					7	5	2	0	0	0	0.024506	1	8195	8195		38.806	0	1	45889			77169	11819	53805	53895	85168	85168					0.03711822354478045
SVLYTAVQP	9	Unmodified	_SVLYTAVQP_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.27069091796875	2	489.26875	976.522947	-0.39377	-0.00019266	3.4479	0.001687	3.0541	0.0014943	489.270593923878	38.922	1.5173	38.922	38.433	39.951	0					145	41	5	0	0	0	0.50848	1	3339	3339		58.782	0.97068	1	53004000			77170	3322	53806	53896	85169	85169					0.033746516946507654
SVMIFEVVE	9	Unmodified	_SVMIFEVVE_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant;ENST00000514179.5_1_5:130834202-130867847:-|nuORF	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2872314453125	2	526.770268	1051.52598	0.3508	0.00018479	-0.32972	-0.00017369	0.021077	1.1103E-05	526.7700974961487	82.633	1.2946	82.413	82.173	83.468	-0.22015					46	29	2	0	0	0	0.024436	1	9925	9925		38.806	0	1	810280			77171	6713	53807	53897	85170	85170					0.00228158757181518
SVMLILFLV	9	Unmodified	_SVMLILFLV_					0	0	0		SOAT2|p.P447S|1|0.2|ENSG00000167780|chr12:53123183-53123183|C/T|missense_variant	SOAT2|p.P447S|1|0.2|ENSG00000167780|chr12:53123183-53123183|C/T|missense_variant	SOAT2|p.P447S|1|0.2|ENSG00000167780|chr12:53123183-53123183|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7994384765625	2	517.819564	1033.62458	0.47957	0.00024833	-2.4	-0.0012428	-1.9205	-0.00099446	517.8181301767306	104.65	0.3618	104.49	104.23	104.59	-0.16484					19	8	3	0	0	0	0.024506	1	13025	13025		23.042	4.7181	1	225000			77172	37911	53808	53898	85171	85171					0.10910806792867334
SVMRGSYSL	9	Unmodified	_SVMRGSYSL_					0	0	0			REV__ENST00000271636.11_2_1:151509992-151510136:+|nuORF	REV__ENST00000271636.11_2_1:151509992-151510136:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.23193359375	2	500.250034	998.485516	-0.89389	-0.00044717	-0.8011	-0.00040075	-1.695	-0.00084792	500.2502476245191	38.351	0.45309	38.351	38.102	38.555	0					15	12	2	0	0	0	0.024263	1	3202	3202		51.335	14.307	1	67251	+		77173	29805	53809	53899	85172	85172					-0.013787628426030096
SVNDWVPSI	9	Unmodified	_SVNDWVPSI_					0	0	0		ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	ENSG00000130222|ENST00000252506|GADD45G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7723083496094	2	508.756007	1015.49746	-0.14461	-7.3571E-05	4.0141	0.0020422	3.8695	0.0019686	508.75701008395095	51.748	0.34115	51.748	51.6	51.942	0					15	9	2	0	0	0	0.024374	1	5525	5525		40.778	8.8233	1	123560			77174	4398	53810	53900	85173	85173					-0.00966822827751912
SVNLQEVF	8	Unmodified	_SVNLQEVF_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.2447509765625	2	468.245275	934.475997	0.20109	9.4162E-05	-1.2222	-0.00057229	-1.0211	-0.00047813	468.2445715077833	103.12	2.3598	103.12	102.32	104.68	0.0054245					123	59	5	0	0	0	0.94517	1	13220	13220		45.952	12.436	1	6608800	+		77175	28077	53811	53901	85174	85174					0.006137921435197313
SVNLQEVF	8	Unmodified	_SVNLQEVF_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.24481201171875	2	468.245275	934.475997	0.40243	0.00018843	-1.4974	-0.00070113	-1.0949	-0.0005127	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.94517	1	12887	12887		45.952	3.5558	1	4364500	+		77176	28077	53811	53901	85175	85175					0.006137921435197313
SVNLQEVF	8	Unmodified	_SVNLQEVF_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24481201171875	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	1.0338	1	12872	12872		31.955	2.8053	1	4477100	+		77177	28077	53811	53901	85176	85176					0.006137921435197313
SVNRVDNRGKS	11	Unmodified	_SVNRVDNRGKS_					0	0	0			REV__LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|3|1|sense	REV__LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|3|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	412.20892333984375	3	411.221575	1230.6429	-0.35369	-0.00014544	-1.7021	-0.00069994	-2.0558	-0.00084539	411.22086527564926	40.806	0.44842	40.67	40.381	40.83	-0.13553					17	11	2	0	0	0	0.024723	1	3583	3583		17.135	6.5727	1	163770	+		77178	36338	53812	53902	85177	85177					0.036800330211463006
SVNRVDNRGKS	11	Unmodified	_SVNRVDNRGKS_					0	0	0			REV__LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|3|1|sense	REV__LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|3|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	411.221575	1230.6429	-0.88418	-0.00036359	-1.6184	-0.00066553	-2.5026	-0.0010291	411.22088561077925	41.053	0.42108	40.823	40.659	41.08	-0.23029	0.075708	0.00024021	NaN	17.135	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185260	+		77179	36338	53812	53902							0.036800330211463006
SVNTPFIN	8	Unmodified	_SVNTPFIN_					0	0	0		nc|ENSG00000189001|Q6UWP8-2|SBSN;ENSG00000189001|ENST00000452271|SBSN	nc|ENSG00000189001|Q6UWP8-2|SBSN	nc|ENSG00000189001|Q6UWP8-2|SBSN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	446.23187255859375	2	446.232168	890.449782	0.088406	3.945E-05	-0.63717	-0.00028433	-0.54876	-0.00024488	446.23196670301775	101.18	2.1749	101.19	100.06	102.24	0.0090256					122	51	5	0	0	0	1.0106	1	12936	12936		35.618	0	1	6913800			77180	9778	53813	53903	85178	85178					0.00017522972052574914
SVPAAPSTDVY	11	Unmodified	_SVPAAPSTDVY_					0	0	0			REV__ENSG00000169047|ENST00000305123|IRS1	REV__ENSG00000169047|ENST00000305123|IRS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.2566528320312	2	553.771854	1105.52915	-0.86756	-0.00048043	1.0773	0.0005966	0.20978	0.00011617	553.7729960775386	45.023	0.25146	44.924	44.868	45.12	-0.099445					10	6	2	0	0	0	0.024749	1	4231	4231		25.574	1.0549	1	129650	+		77181	26313	53814	53904	85179	85179					-0.01938874864481477
SVPDYRPL	8	Unmodified	_SVPDYRPL_					0	0	0		ENSG00000175718|ENST00000424776|RBMXL3	ENSG00000175718|ENST00000424776|RBMXL3	ENSG00000175718|ENST00000424776|RBMXL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7635192871094	2	473.753267	945.491981	0.075839	3.5929E-05	-1.8644	-0.00088326	-1.7886	-0.00084734	473.7522628109227	101.92	0.45282	101.75	101.56	102.01	-0.17178					23	10	3	0	0	0	0.027866	1	12649	12649		30.504	0	1	122300			77182	8585	53815	53905	85180	85180					0.01705498380431436
SVPEAIATT	9	Unmodified	_SVPEAIATT_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.7267150878906	2	444.737283	887.460012	-0.61152	-0.00027197	-0.0027056	-1.2033E-06	-0.61423	-0.00027317	444.737275257857	39.119	0.63978	38.896	38.823	39.462	-0.22311					20	16	2	0	0	0	0.024457	1	3275	3275		29.15	0	1	154560	+		77183	20312	53816	53906	85181	85181					0.011780859066220728
SVPEQEPEP	9	Unmodified	_SVPEQEPEP_					0	0	0			REV__ENSG00000145907|ENST00000356245|G3BP1	REV__ENSG00000145907|ENST00000356245|G3BP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.23846435546875	2	506.235104	1010.45566	1.5386	0.00077889	-2.6691	-0.0013512	-1.1305	-0.00057232	506.2331998377043	63.458	0.35954	63.512	63.373	63.733	0.054104					21	9	3	0	0	0	0.024292	1	7346	7346		40.778	5.1599	1	175520	+		77184	24443	53817	53907	85182	85182					-0.04915423306943012
SVPGIEMKP	9	Unmodified	_SVPGIEMKP_					0	0	0			REV__ENSG00000109911|ENST00000640961|ELP4	REV__ENSG00000109911|ENST00000640961|ELP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7354736328125	2	479.257328	956.500103	0.36608	0.00017545	-0.90127	-0.00043194	-0.53519	-0.00025649	479.25706973455146	60.302	1.0143	60.105	59.728	60.742	-0.19742					37	25	2	0	0	0	0.024466	1	6659	6659		47.657	5.2612	1	167720	+		77185	21822	53818	53908	85183	85183					0.020113093055442732
SVPGPMAPSY	10	Unmodified	_SVPGPMAPSY_					0	0	0			REV__ENSG00000165891|ENST00000322886|E2F7	REV__ENSG00000165891|ENST00000322886|E2F7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2772216796875	2	503.239135	1004.46372	-0.28589	-0.00014387	-2.2542	-0.0011344	-2.5401	-0.0012783	503.23757394625585	30.898	0.46238	30.973	30.667	31.129	0.074314					14	10	2	0	0	0	0.03519	1	1954	1954		42.396	0	1	85743	+		77186	25941	53819	53909	85184	85184					-0.03833567591175324
SVPGRIAI	8	Unmodified	_SVPGRIAI_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.7528991699219	2	406.75307	811.491587	0.65963	0.00026831	-0.72794	-0.00029609	-0.068308	-2.7785E-05	406.7527407890106	45.243	0.4762	45.243	44.934	45.41	0					41	13	4	0	0	0	0.71833	1	4384	4384		65.803	2.4969	1	3564800	+		77187	27461	53820	53910	85185	85185					0.07830123451208237
SVPGRIAI	8	Unmodified	_SVPGRIAI_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	406.75307	811.491587	0.65963	0.00026831	-0.72794	-0.00029609	-0.068308	-2.7785E-05	406.7527407890106	45.243	0.4762	45.243	44.934	45.41	0	0.007438	-0.00026698	NaN	65.803	41	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3564800	+		77188	27461	53820	53910							0.07830123451208237
SVPLFGGFWI	10	Unmodified	_SVPLFGGFWI_					0	0	0			REV__ENST00000550161.5_1_12:48359650-48359713:+|nuORF	REV__ENST00000550161.5_1_12:48359650-48359713:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.8045043945312	2	561.80276	1121.59097	0.7782	0.00043719	1.8722	0.0010518	2.6504	0.001489	561.8036701330465	19.529	0.6462	19.329	18.908	19.554	-0.2001					29	12	4	0	0	0	1.1237	1	439	439		23.042	1.0826	1	249390	+		77189	34901	53821	53911	85186	85186					0.035035213453284086
SVPLPLPK	8	Unmodified	_SVPLPLPK_					0	0	0		ENST00000318291.4_1_12:752304-752412:+|nuORF	ENST00000318291.4_1_12:752304-752412:+|nuORF	ENST00000318291.4_1_12:752304-752412:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	426.57928466796875	2	425.773471	849.53239	1.8804	0.00080062	1.7994	0.00076615	3.6798	0.0015668	425.77405726789453	36.525	0.72031	36.327	36.016	36.736	-0.19829					30	17	2	0	0	0	0.027866	1	2814	2814		12.959	0	1	127860			77190	12173	53822	53912	85187	85187					0.10160464770854105
SVPLPVPV	8	Unmodified	_SVPLPVPV_					0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	403.5722961425781	2	404.252372	806.49019	0.44958	0.00018174	3.2147	0.0012995	3.6643	0.0014813	404.2535773273648	42.527	0.72247	42.404	41.961	42.683	-0.12299					24	18	2	0	0	0	0.027866	1	3857	3857		28.254	6.5519	1	78649			77191	9709	53823	53913	85188	85188					0.07920489362470562
SVPLPVPV	8	Unmodified	_SVPLPVPV_					0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.5718688964844	2	404.252372	806.49019	0.4745	0.00019182	2.732	0.0011044	3.2065	0.0012962	404.25333536914104	42.638	0.60221	42.406	42.042	42.644	-0.23186					24	15	2	0	0	0	0.027866	1	3867	3867		21.702	7.0382	1	139740			77192	9709	53823	53913	85189	85189					0.07920489362470562
SVPLPVPV	8	Unmodified	_SVPLPVPV_					0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	404.252372	806.49019	1.3994	0.00056571	3.2618	0.0013186	4.6613	0.0018843	404.2533469555952	42.517	1.0815	42.517	41.921	43.002	0	0.00078813	0.00011747	NaN	28.254	36	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174810			77193	9709	53823	53913							0.07920489362470562
SVPLPVPV	8	Unmodified	_SVPLPVPV_					0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	404.252372	806.49019	0.55152	0.00022295	3.6915	0.0014923	4.243	0.0017153	404.2536836241502	42.715	0.60289	42.575	42.243	42.846	-0.13929	0.059014	0.00046486	NaN	28.254	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117800			77194	9709	53823	53913							0.07920489362470562
SVPLPVPV	8	Unmodified	_SVPLPVPV_					0	0	0		ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	ENSG00000188322|ENST00000341901|SBK1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	404.252372	806.49019	2.1257	0.00085931	2.7835	0.0011253	4.9092	0.0019846	404.253146440891	42.653	1.104	42.679	42.12	43.224	0.026012	0.16255	-0.00026925	NaN	28.254	41	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110490			77195	9709	53823	53913							0.07920489362470562
SVPNRGNI	8	Unmodified	_SVPNRGNI_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.19000244140625	2	428.735409	855.456264	-0.16619	-7.1252E-05	0.32826	0.00014074	0.16207	6.9483E-05	428.7354614943311	25.397	0.89424	25.17	24.623	25.517	-0.22683					42	20	3	0	0	0	0.027866	1	1194	1194		23.042	17.121	1	446120			77196	1373	53824	53914	85190	85190					0.02275460923431183
SVPQRSTL	8	Unmodified	_SVPQRSTL_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.25103759765625	2	444.250892	886.48723	-0.33659	-0.00014953	1.7272	0.00076732	1.3906	0.00061779	444.2521868694058	29.178	2.577	29.181	28.713	31.29	0.0031357					169	62	5	0	0	0	0.32162	2	1795	1747;1795		108.09	14.892	1	169840000			77197	6563	53825	53915	85191;85192	85192					0.03944614237684618
SVPQRSTL	8	Unmodified	_SVPQRSTL_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.2510070800781	2	444.250892	886.48723	-0.012372	-5.4961E-06	1.3035	0.00057909	1.2911	0.00057359	444.25196265010027	28.882	2.6407	28.963	28.411	31.051	0.080811					155	64	4	0	0	0	0.18427	3	1642	1642;1702;1714		143.11	10.94	1	155110000			77198	6563	53825	53915	85193;85194;85195	85193					0.03944614237684618
SVPRKKPLPW	10	Unmodified	_SVPRKKPLPW_					0	0	0		nc|ENSG00000004777|O14559-10|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.3666381835938	2	604.369133	1206.72371	-1.0438	-0.00063086	-2.7772	-0.0016785	-3.8211	-0.0023093	604.3673343123938	103.38	1.4486	103.38	102.98	104.43	-0.0046005					97	34	5	0	0	0	1.1267	1	13233	13233		29.15	6.1071	1	4517100			77199	744	53826	53916	85196	85196					0.12861965801971564
SVPRKKPLPW	10	Unmodified	_SVPRKKPLPW_					0	0	0		nc|ENSG00000004777|O14559-10|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.366455078125	2	604.369133	1206.72371	0.12428	7.5109E-05	-4.1564	-0.002512	-4.0321	-0.0024369	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.1307	1	12886	12886		26.693	12.556	1	4482300			77200	744	53826	53916	85197	85197					0.12861965801971564
SVPRPVDCVP	10	Unmodified	_SVPRPVDCVP_					0	0	0			REV__chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	REV__chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.80517578125	2	534.778959	1067.54336	-1.0612	-0.00056751	-0.99329	-0.00053119	-2.0545	-0.0010987	534.7782578293305	44.947	0.42225	44.947	44.691	45.114	0					17	11	2	0	0	0	0.03519	1	4299	4299		54.776	7.119	1	132940	+		77201	19406	53827	53917	85198	85198					0.012294990828195296
SVPTAVTIPV	10	Unmodified	_SVPTAVTIPV_					0	0	0		nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-3|PPP1R12A	nc|ENSG00000058272|O14974-3|PPP1R12A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.29156494140625	2	492.292225	982.569897	0.90659	0.00044631	-0.74026	-0.00036442	0.16633	8.1885E-05	492.2917097539068	70.856	0.42734	70.563	70.329	70.756	-0.29291					22	9	3	0	0	0	0.52982	1	8529	8529		84.916	8.1414	1	715400			77202	1213	53828	53918	85199	85199					0.07791511245818583
SVPTPKAQPIT	11	Unmodified	_SVPTPKAQPIT_					0	0	0			REV__nc|ENSG00000120949|P28908-3|TNFRSF8	REV__nc|ENSG00000120949|P28908-3|TNFRSF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2833251953125	2	569.826963	1137.63937	0.25328	0.00014433	2.9648	0.0016894	3.2181	0.0018338	569.8284613070482	81.154	0.36967	80.917	80.728	81.098	-0.23624					14	8	2	0	0	0	0.024765	1	9753	9753		41.427	4.3981	1	124620	+		77203	22572	53829	53919	85200	85200					0.07605970194549627
SVQTPVSPM	9	Unmodified	_SVQTPVSPM_					0	0	0			REV__ENST00000460848.5_1_10:135215574-135233666:+|nuORF	REV__ENST00000460848.5_1_10:135215574-135233666:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7751159667969	2	473.239135	944.463718	-0.70817	-0.00033514	-1.5317	-0.00072488	-2.2399	-0.00106	473.2383418334161	37.161	0.38557	36.942	36.767	37.152	-0.2195					16	9	2	0	0	0	0.024381	1	2939	2939		29.15	0	1	414070	+		77204	32863	53830	53920	85201	85201					-0.010735675911632825
SVQVPVQAAPI	11	Unmodified	_SVQVPVQAAPI_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.2566528320312	2	554.821681	1107.62881	-0.96197	-0.00053372	-0.072493	-4.0221E-05	-1.0345	-0.00057394	554.8212679691841	44.965	0.22774	44.866	44.749	44.977	-0.099445					8	5	2	0	0	0	0.024763	1	4231	4231		15.642	0	1	69751	+		77205	26568	53831	53921	85202	85202					0.0792998754011478
SVREEKERDL	10	Unmodified	_SVREEKERDL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.8463134765625	3	420.889603	1259.64698	-0.20783	-8.7471E-05	3.4819	0.0014655	3.2741	0.001378	420.8908936359363	32.944	0.48214	32.779	32.476	32.958	-0.16565					20	11	3	0	0	0	0.03519	1	2304	2304		21.78	0	1	171380	+		77206	28136	53832	53922	85203	85203					0.027540777241711112
SVRENKQP	8	Unmodified	_SVRENKQP_					0	0	0		nc|ENSG00000120159|Q9H8G2-2|CAAP1;ENSG00000120159|ENST00000333916|CAAP1	nc|ENSG00000120159|Q9H8G2-2|CAAP1	nc|ENSG00000120159|Q9H8G2-2|CAAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.73541259765625	2	479.259248	956.503943	-0.99351	-0.00047615	-4.4686	-0.0021416	-5.4621	-0.0026178	479.2577900452377	60.167	2.4795	60.246	59.308	61.787	0.078884					88	65	3	0	0	0	0.027866	1	6717	6717		63.306	15.391	1	433960			77207	3795	53833	53923	85204	85204					0.023951151236246915
SVRHLVLV	8	Unmodified	_SVRHLVLV_					0	0	0			REV__ENST00000528694.1_1_11:829540-829996:+|nuORF	REV__ENST00000528694.1_1_11:829540-829996:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7587890625	2	461.795269	921.575986	-0.99398	-0.00045902	1.9084	0.00088131	0.91445	0.00042229	461.7953194708645	30.849	0.24541	30.849	30.634	30.879	0					7	5	2	0	0	0	0.027866	1	2015	2015		23.042	0	1	40754	+		77208	34500	53834	53924	85205	85205					0.11206074267988697
SVRIKYHT	8	Unmodified	_SVRIKYHT_					0	0	0			REV__nc|ENSG00000130856|Q9UL36-2|ZNF236	REV__nc|ENSG00000130856|Q9UL36-2|ZNF236	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2922668457031	2	502.287808	1002.56106	-0.95545	-0.00047991	-4.4529	-0.0022366	-5.4083	-0.0027165	502.28411273770536	57.658	0.19321	57.425	57.349	57.543	-0.23363					5	4	2	0	0	0	0.027866	1	6299	6299		47.657	0	1	31807	+		77209	23164	53835	53925	85206	85206					0.059885823999820786
SVRKAAELAL	10	Unmodified	_SVRKAAELAL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2823486328125	2	529.321848	1056.62914	-0.37198	-0.0001969	-2.1313	-0.0011281	-2.5033	-0.001325	529.3216868433319	39.861	0.42516	39.861	39.562	39.988	0					31	11	4	0	0	0	0.03519	1	3471	3471		45.972	0	1	440710			77210	5048	53836	53926	85207	85207					0.10309407259978798
SVRLIASLL	9	Unmodified	_SVRLIASLL_					0	0	0			REV__XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	REV__XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.745849609375	2	486.316035	970.617516	-0.21766	-0.00010585	0.4376	0.00021281	0.21994	0.00010696	486.31606388344244	62.046	0.42799	61.833	61.584	62.012	-0.21375					18	10	2	0	0	0	0.024374	1	6991	6991		19.104	0	1	389610	+		77211	23333	53837	53927	85208	85208					0.13103210236658924
SVRPRPQGGRR	11	Unmodified	_SVRPRPQGGRR_					0	0	0		ENST00000405402.6_1_16:85645017-85645071:+|nuORF	ENST00000405402.6_1_16:85645017-85645071:+|nuORF	ENST00000405402.6_1_16:85645017-85645071:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3689575195312	2	633.368518	1264.72248	0.31837	0.00020164	0.56274	0.00035642	0.88111	0.00055807	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	0.9728	2	11963	11933;11963		42.864	4.1107	1	3419700			77212	13717	53838	53928	85209;85210	85210					0.1007114448577795
SVRSASAPSN	10	Unmodified	_SVRSASAPSN_					0	0	0			REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.7936706542969	2	488.246338	974.478122	-0.6084	-0.00029705	-3.688	-0.0018007	-4.2964	-0.0020977	488.24475548870214	36.342	0.1768	36.137	35.987	36.164	-0.20518					5	4	2	0	0	0	0.03519	1	2840	2840		35.152	7.2698	1	48362	+		77213	33166	53839	53929	85211	85211					-0.010137791186707545
SVRSKIKSI	9	Unmodified	_SVRSKIKSI_					0	0	0			REV__chr10:6833688-6837974|381|12.99|0.26|5.65|+|2|LINC00707,LINC00707|1	REV__chr10:6833688-6837974|381|12.99|0.26|5.65|+|2|LINC00707,LINC00707|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.32318115234375	2	509.324391	1016.63423	-0.39813	-0.00020278	-3.1133	-0.0015857	-3.5114	-0.0017884	509.32286050156773	78.341	0.65765	78.341	78.042	78.7	0					44	15	4	0	0	0	0.53979	1	9682	9682		56.721	3.3696	1	3718500	+		77214	19345	53840	53930	85212	85212					0.12657711122596993
SVRTYTVK	8	Unmodified	_SVRTYTVK_					0	0	0			REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.2925720214844	2	477.274367	952.53418	0.73323	0.00034995	-0.74004	-0.0003532	-0.0068127	-3.2515E-06	477.2738959763836	50.793	0.75017	50.793	50.609	51.359	0					34	20	2	0	0	0	0.027866	1	5439	5439		29.15	1.2673	1	298560	+		77215	37722	53841	53931	85213	85213					0.056014737887949195
SVRTYTVK	8	Unmodified	_SVRTYTVK_					0	0	0			REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.29290771484375	2	477.274367	952.53418	0.1086	5.183E-05	0.64556	0.00030811	0.75416	0.00035994	477.27410160548595	50.966	0.71472	50.817	50.689	51.404	-0.14916					26	19	2	0	0	0	0.027866	1	5440	5440		17.365	0	1	212630	+		77216	37722	53841	53931	85214	85214					0.056014737887949195
SVRTYTVK	8	Unmodified	_SVRTYTVK_					0	0	0			REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	477.274367	952.53418	-0.36927	-0.00017624	0.62166	0.0002967	0.25239	0.00012046	477.27439160660066	50.728	0.81065	50.809	50.41	51.221	0.08099	-0.086419	0.00070738	NaN	21.96	27	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279510	+		77217	37722	53841	53931							0.056014737887949195
SVRTYTVK	8	Unmodified	_SVRTYTVK_					0	0	0			REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	REV__TP53I13|p.R51K|1|0.12|ENSG00000167543|chr17:29569328-29569328|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.274367	952.53418	1.1704	0.00055858	-1.1159	-0.00053258	0.054484	2.6004E-05	477.2737804662628	51.343	0.15975	51.163	51.062	51.222	-0.18071	0.26733	-0.00095118	NaN	21.96	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51294	+		77218	37722	53841	53931							0.056014737887949195
SVRYKQSL	8	Unmodified	_SVRYKQSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.78009033203125	2	490.779816	979.545079	-0.95768	-0.00047001	0.80061	0.00039292	-0.15707	-7.7087E-05	490.78006158235024	27.062	1.1814	26.82	26.372	27.553	-0.24217					68	27	4	0	0	0	0.38989	2	1463	1463;1475		98.629	13.722	1	3365100			77219	2053	53842	53932	85215;85216	85215					0.054488761630864246
SVRYKQSL	8	Unmodified	_SVRYKQSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.77996826171875	2	490.779816	979.545079	-0.21935	-0.00010765	-0.086687	-4.2544E-05	-0.30603	-0.0001502	490.779660584794	26.912	1.1709	26.744	26.188	27.359	-0.16816					73	27	4	0	0	0	0.47727	3	1427	1427;1438;1451		87.696	24.429	1	2904100			77220	2053	53842	53932	85217;85218;85219	85217					0.054488761630864246
SVRYKQSL	8	Unmodified	_SVRYKQSL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.7799987792969	2	490.779816	979.545079	-0.27826	-0.00013657	-0.16598	-8.1461E-05	-0.44425	-0.00021803	490.7796957959635	27.007	1.3361	26.85	26.388	27.724	-0.15664					90	31	5	0	0	0	0.47727	1	1437	1437		87.696	18.91	1	3339300			77221	2053	53842	53932	85220	85220					0.054488761630864246
SVSAILRAL	9	Unmodified	_SVSAILRAL_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2538146972656	2	465.292559	928.570566	-0.61522	-0.00028626	-0.082784	-3.8519E-05	-0.69801	-0.00032478	465.2923322181476	40.022	0.42254	39.791	39.585	40.008	-0.23021					17	10	2	0	0	0	0.024262	1	3447	3447		38.806	0	1	216050	+		77222	24090	53843	53933	85221	85221					0.10342350685516521
SVSCLNNLCLH	11	Unmodified	_SVSCLNNLCLH_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000188107|ENST00000503581|EYS;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5584716796875	3	401.526731	1201.55836	0.027455	1.1024E-05	-2.9115	-0.001169	-2.8841	-0.001158	401.525443554491	35.81	0.78465	35.605	35.306	36.091	-0.20518					44	21	3	0	0	0	0.02478	1	2754	2754		70.399	31.645	1	966980			77223	17687;9692	53844	53934	85222	85222					-0.034353771114865594
SVSFPRSFI	9	Unmodified	_SVSFPRSFI_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.7431640625	2	520.282192	1038.54983	-0.53143	-0.00027649	-4.0564	-0.0021105	-4.5879	-0.002387	520.2800853722055	38.214	0.32744	37.996	37.755	38.083	-0.21849					12	9	2	0	0	0	0.024374	1	3101	3101		40.778	5.1599	1	1124000	+		77224	24228	53845	53935	85223	85223					0.032097603058673485
SVSIETTHDLT	11	Unmodified	_SVSIETTHDLT_					0	0	0			REV__nc|ENSG00000138101|O60941-2|DTNB	REV__nc|ENSG00000138101|O60941-2|DTNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.5346984863281	3	401.534825	1201.58265	0.019317	7.7566E-06	-0.27002	-0.00010842	-0.2507	-0.00010067	401.5345966739579	35.945	0.9738	35.74	35.428	36.402	-0.20518					60	26	3	0	0	0	1.0017	1	2778	2778		32.034	4.3902	1	1971900	+		77225	23820	53846	53936	85224	85224					-0.010081221526206718
SVSIHPLV	8	Unmodified	_SVSIHPLV_					0	0	0		ENST00000344423.9_1_8:28204642-28205029:-|nuORF	ENST00000344423.9_1_8:28204642-28205029:-|nuORF	ENST00000344423.9_1_8:28204642-28205029:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	426.23492431640625	2	426.252903	850.491253	-0.52033	-0.00022179	-4.2545	-0.0018135	-4.7748	-0.0020353	426.2505711535947	28.057	0.43367	28.053	27.808	28.242	-0.0042					18	10	3	0	0	0	0.027866	1	1609	1609		13.775	0	1	464960			77226	12549	53847	53937	85225	85225					0.06002703731371639
SVSIVFGEGTQ	11	Unmodified	_SVSIVFGEGTQ_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.7825927734375	2	562.285128	1122.5557	-0.20017	-0.00011255	-2.3245	-0.001307	-2.5247	-0.0014196	562.2837850813406	64.479	1.1397	64.479	63.88	65.02	0					55	30	3	0	0	0	0.024756	1	7595	7595		44.377	17.684	1	4242100	+		77227	22316	53848	53938	85226	85226					-0.0006718597312556085
SVSKDHALRLW	11	Unmodified	_SVSKDHALRLW_					0	0	0		ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED	ENSG00000074266|ENST00000263360|EED	ENSG00000074266|ENST00000263360|EED	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.7508239746094	3	437.910449	1310.70952	-0.95494	-0.00041818	0.61695	0.00027017	-0.33799	-0.00014801	437.91068186726875	45.001	0.48243	44.901	44.672	45.154	-0.099445					33	12	3	0	0	0	0.024739	1	4224	4224		50.034	23.284	1	737830			77228	1526	53849	53939	85227	85227					0.0665926858300736
SVSKGLNLLG	10	Unmodified	_SVSKGLNLLG_					0	0	0			REV__ENST00000301785.5_1_11:62481247-62481610:-|nuORF	REV__ENST00000301785.5_1_11:62481247-62481610:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7757568359375	2	494.295299	986.576045	-0.51642	-0.00025526	0.39274	0.00019413	-0.12368	-6.1135E-05	494.29535232586215	60.527	0.8706	60.313	60.079	60.95	-0.2134					39	22	3	0	0	0	0.03519	1	6899	6899		44.377	34.112	1	1796300	+		77229	30066	53850	53940	85228	85228					0.08222029477326487
SVSKKLAEY	9	Unmodified	_SVSKKLAEY_					0	0	0			REV__HAUS6|p.L844V|1|0.07|ENSG00000147874|chr9:19058237-19058237|G/C|missense_variant	REV__HAUS6|p.L844V|1|0.07|ENSG00000147874|chr9:19058237-19058237|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.788330078125	2	512.787307	1023.56006	-0.85074	-0.00043625	1.5219	0.0007804	0.67113	0.00034415	512.7879931066898	45.024	0.82993	44.924	44.594	45.424	-0.099445					61	22	4	0	0	0	0.75397	1	4238	4238		42.396	1.8235	1	3251300	+		77230	36090	53851	53941	85229	85229					0.049223232404074224
SVSLLVSRLS	10	Unmodified	_SVSLLVSRLS_					0	0	0			REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	REV__ENST00000524227.5_1_8:41519075-41530298:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.81640625	2	530.821681	1059.62881	-0.48284	-0.0002563	3.4969	0.0018562	3.014	0.0015999	530.8239389947602	88.766	0.33907	88.635	88.401	88.74	-0.13135					10	7	2	0	0	0	0.03519	1	10836	10836		36.447	2.2742	1	53899	+		77231	34378	53852	53942	85230	85230					0.10137987540133508
SVSLNKQQSN	10	Unmodified	_SVSLNKQQSN_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.7982177734375	2	552.785827	1103.5571	-0.77316	-0.00042739	4.4488	0.0024592	3.6756	0.0020318	552.7880424300373	56.335	1.1317	56.179	55.517	56.649	-0.15601					64	30	3	0	0	0	0.03519	1	6155	6155		42.864	0	1	814040	+		77232	21142	53853	53943	85231	85231					0.009464481156101101
SVSPMPLSL	9	Unmodified	_SVSPMPLSL_					0	0	0			REV__ENSG00000165125|ENST00000359396|TRPV6	REV__ENSG00000165125|ENST00000359396|TRPV6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.28826904296875	2	465.751879	929.489204	-0.7028	-0.00032733	2.0535	0.00095644	1.3507	0.00062911	465.7526983256776	61.757	0.36961	61.757	61.605	61.974	0					14	9	2	0	0	0	0.024323	1	7162	7162		44.117	6.9577	1	153270	+		77233	25843	53854	53944	85232	85232					0.021639069312641368
SVSRKGSQ	8	Unmodified	_SVSRKGSQ_					0	0	0			REV__ENST00000367922.7_1_1:162602283-162602376:+|nuORF	REV__ENST00000367922.7_1_1:162602283-162602376:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.2508544921875	2	424.732866	847.451179	0.51662	0.00021943	3.7979	0.0016131	4.3145	0.0018325	424.7345132895289	103.42	0.53965	103.29	102.94	103.48	-0.12724					17	12	2	0	0	0	0.027866	1	12815	12815		42.396	23.036	1	31209	+		77234	31035	53855	53945	85233	85233					0.021351570608089787
SVSSIPRFW	9	Unmodified	_SVSSIPRFW_					0	0	0		nc|ENSG00000083444|Q02809-2|PLOD1	nc|ENSG00000083444|Q02809-2|PLOD1	nc|ENSG00000083444|Q02809-2|PLOD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7997436523438	2	539.787641	1077.56073	-1.1083	-0.00059826	1.4891	0.00080382	0.38082	0.00020556	539.7870817791099	68.78	0.89268	68.518	67.897	68.789	-0.26166					31	21	2	0	0	0	0.024323	1	7900	7900		44.117	0	1	188750			77235	18096	53856	53946	85234	85234					0.02505162680131434
SVSSTKRKLT	10	Unmodified	_SVSSTKRKLT_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.830078125	2	553.830037	1105.64552	0.070138	3.8845E-05	-0.25833	-0.00014307	-0.18819	-0.00010423	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.1246	1	11146	11146		23.523	2.5758	1	5986700	+		77236	28972	53857	53947	85235	85235					0.09692488426071577
SVTAGIHSH	9	Unmodified	_SVTAGIHSH_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.7815246582031	2	454.732866	907.451179	-0.6758	-0.00030731	3.9473	0.001795	3.2715	0.0014877	454.7323593175883	44.903	0.65314	44.651	44.212	44.865	-0.25252					18	16	2	0	0	0	0.024381	1	4207	4207		37.159	8.9048	1	49883	+		77237	26887	53858	53948	85236	85236					-0.00624842939203063
SVTDLAFKV	9	Unmodified	_SVTDLAFKV_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2766418457031	2	490.276575	978.538597	-0.50809	-0.00024911	0.2572	0.0001261	-0.25089	-0.00012301	490.2766787789101	64.67	1.3348	64.67	64.347	65.681	0					81	36	5	0	0	0	0.03201	4	7626	7604;7616;7626;7640		139.97	60.519	1	8478100			77238	1242	53859	53949	85237;85238;85239;85240	85239					0.04846938211710494
SVTDLAFKV	9	Unmodified	_SVTDLAFKV_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.27679443359375	2	490.276575	978.538597	-1.351	-0.00066234	1.1041	0.00054131	-0.24686	-0.00012103	490.2770819267681	64.941	1.2744	64.678	64.417	65.691	-0.2626					85	34	5	0	0	0	0.077175	4	7650	7617;7627;7638;7650		118.74	49.956	1	8576500			77239	1242	53859	53949	85241;85242;85243;85244	85244					0.04846938211710494
SVTDLAFKV	9	Unmodified	_SVTDLAFKV_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2761535644531	2	490.276575	978.538597	-0.71276	-0.00034945	0.56517	0.00027709	-0.14759	-7.2359E-05	490.2768001533284	64.638	1.1624	64.683	64.335	65.497	0.045502					79	31	5	0	0	0	0.077175	4	7525	7525;7535;7549;7562		118.74	49.956	1	8826300			77240	1242	53859	53949	85245;85246;85247;85248	85245					0.04846938211710494
SVTEIQEKW	9	Unmodified	_SVTEIQEKW_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;DDX21|p.A688T|1|0.21|ENSG00000165732|chr10:68981561-68981561|G/A|missense_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.2882080078125	2	560.287671	1118.56079	0.61127	0.00034249	-1.3945	-0.00078135	-0.78328	-0.00043886	560.2870960021557	51.028	1.2771	50.917	50.488	51.765	-0.11163					105	33	5	0	0	0	0.014475	3	5238	5215;5226;5238		214.23	97.327	1	5322400			77241	7461	53860	53950	85249;85250;85251	85251					0.0062511788946721936
SVTEIQEKW	9	Unmodified	_SVTEIQEKW_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;DDX21|p.A688T|1|0.21|ENSG00000165732|chr10:68981561-68981561|G/A|missense_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.2882080078125	2	560.287671	1118.56079	-0.21805	-0.00012217	-0.35549	-0.00019918	-0.57354	-0.00032135	560.2874414558293	51.324	1.0605	51.048	50.552	51.613	-0.27643					81	27	5	0	0	0	0.011521	3	5266	5243;5255;5266		229.33	111.52	1	5777200			77242	7461	53860	53950	85252;85253;85254	85254					0.0062511788946721936
SVTEIQEKW	9	Unmodified	_SVTEIQEKW_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;nc|ENSG00000165732|Q9NR30-2|DDX21;DDX21|p.A688T|1|0.21|ENSG00000165732|chr10:68981561-68981561|G/A|missense_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.2890625	2	560.287671	1118.56079	0.59775	0.00033491	-1.3205	-0.00073984	-0.72273	-0.00040493	560.2869668378685	51.106	1.211	50.926	50.426	51.637	-0.18071					72	31	4	0	0	0	0.012922	4	5249	5214;5225;5236;5249		219.56	93.021	1	6557300			77243	7461	53860	53950	85255;85256;85257;85258	85258					0.0062511788946721936
SVTEVYIEV	9	Unmodified	_SVTEVYIEV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.771728515625	2	519.771322	1037.52809	-0.32895	-0.00017098	0.42711	0.000222	0.09816	5.102E-05	519.7713669310616	72.795	0.58839	72.597	72.248	72.836	-0.1981					33	13	3	0	0	0	0.50848	1	8538	8538		58.782	9.3404	1	627760			77244	1818;17643	53861	53951	85259	85259					0.010829107666040727
SVTEVYIEV	9	Unmodified	_SVTEVYIEV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.771322	1037.52809	-0.31961	-0.00016613	2.1046	0.0010939	1.785	0.0009278	519.7714191380546	72.521	0.49168	72.521	72.333	72.825	0	-0.080756	0.0015229	NaN	58.782	24	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150700			77245	1818;17643	53861	53951							0.010829107666040727
SVTEVYIEV	9	Unmodified	_SVTEVYIEV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.771322	1037.52809	-0.38289	-0.00019901	1.0047	0.00052222	0.62181	0.0003232	519.7714642215958	72.893	0.51616	72.617	72.368	72.884	-0.2769	0.014826	0.00037949	NaN	58.782	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131010			77246	1818;17643	53861	53951							0.010829107666040727
SVTEVYIEV	9	Unmodified	_SVTEVYIEV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.771322	1037.52809	0.13667	7.1036E-05	0.38504	0.00020013	0.5217	0.00027117	519.7712587557053	72.937	0.6348	72.672	72.343	72.977	-0.26479	0.070636	-0.00026468	NaN	58.782	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268110			77247	1818;17643	53861	53951							0.010829107666040727
SVTFYWLV	8	Unmodified	_SVTFYWLV_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	507.768386	1013.52222	1.4038	0.00071281	-2.5272	-0.0012832	-1.1234	-0.00057044	507.76708504622036	59.318	1.0499	59.118	58.78	59.83	-0.20013					101	28	5	0	0	0	0.65272	1	6748	6748		71.378	2.8932	1	25911000			77248	18408	53862	53952	85260	85260					0.015998570456190464
SVTGIAAPTY	10	Unmodified	_SVTGIAAPTY_					0	0	0			REV__ENST00000395091.2_1_16:30569644-30569812:-|nuORF	REV__ENST00000395091.2_1_16:30569644-30569812:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25811767578125	2	490.258382	978.502212	0.0031706	1.5544E-06	-0.3099	-0.00015193	-0.30673	-0.00015038	490.25838747123015	104.9	3.0237	104.9	103.7	106.72	0.00096893					189	95	5	0	0	0	1.0781	1	13429	13429		35.618	0	1	6674100	+		77249	31688	53863	53953	85261	85261					0.01210061314975519
SVTGSAGHTP	10	Unmodified	_SVTGSAGHTP_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.22430419921875	2	457.222331	912.430109	0.22187	0.00010144	0.12553	5.7396E-05	0.3474	0.00015884	457.22230331352705	101.69	0.98532	101.57	100.94	101.92	-0.12576					47	23	3	0	0	0	1.0142	1	12632	12632		44.117	6.9577	1	285820			77250	4541	53864	53954	85262	85262					-0.029608530387235987
SVTKCSISK	9	Unmodified	_SVTKCSISK_					0	0	0		ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000315147.8_1_5:70265933-70281744:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7769775390625	2	476.760235	951.505917	1.0164	0.00048458	3.2815	0.0015645	4.2979	0.0020491	476.76165151882793	72.328	1.6976	72.047	70.929	72.627	-0.28124					64	43	3	0	0	0	0.024427	1	8704	8704		19.997	0	1	1198800			77251	10839	53865	53955	85263	85263					0.028224078172115696
SVTKKTHTSQ	10	Unmodified	_SVTKKTHTSQ_					0	0	0		ENSG00000069667|ENST00000335670|RORA;ENST00000557822.5_1_15:60823934-61521429:-|nuORF	ENSG00000069667|ENST00000335670|RORA	ENSG00000069667|ENST00000335670|RORA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.333984375	2	558.80402	1115.59349	0.14644	8.1832E-05	3.4157	0.0019087	3.5621	0.0019905	558.8056435800108	51.868	1.1602	51.749	50.966	52.126	-0.11875					57	30	2	0	0	0	0.03519	1	5302	5302		31.53	10.693	1	786740			77252	1404	53866	53956	85264	85264					0.040313250123290345
SVTKRDVLD	9	Unmodified	_SVTKRDVLD_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2798461914062	2	516.787838	1031.56112	0.036917	1.9078E-05	0.85416	0.00044142	0.89108	0.0004605	516.7875920113248	55.694	0.50935	55.478	55.372	55.881	-0.21607					24	13	3	0	0	0	0.024466	1	5981	5981		24.519	0	1	1013200			77253	4580	53867	53957	85265	85265					0.04660537609311177
SVTLIYMV	8	Unmodified	_SVTLIYMV_					0	0	0			REV__ENSG00000169214|ENST00000641470|OR6F1	REV__ENSG00000169214|ENST00000641470|OR6F1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7740478515625	2	463.256797	924.499041	-0.31313	-0.00014506	1.4883	0.00068948	1.1752	0.00054442	463.25899081850355	47.447	0.13584	47.447	47.361	47.497	0					5	3	2	0	0	0	0.027866	1	4756	4756		21.702	0	1	60758	+		77254	26333	53868	53958	85266	85266					0.03377094936638514
SVTPAHIM	8	Unmodified	_SVTPAHIM_					0	0	0			REV__nc|ENSG00000116198|O60308-2|CEP104;REV__ENSG00000116198|ENST00000378230|CEP104	REV__ENSG00000116198|ENST00000378230|CEP104	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.22540283203125	2	428.223288	854.432024	0.50741	0.00021728	4.3935	0.0018814	4.901	0.0020987	428.2250912927943	25.559	1.2919	25.639	25.336	26.628	0.08009					57	30	4	0	0	0	1.0133	2	1165	1165;1188		35.201	5.3592	1	1541200	+		77255	22267;36589	53869	53959	85267;85268	85267					-0.0010151555446782368
SVTQSFHH	8	Unmodified	_SVTQSFHH_					0	0	0			REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.78375244140625	2	471.725041	941.435529	0.016619	7.8395E-06	-1.1409	-0.00053817	-1.1242	-0.00053034	471.72430181469196	46.61	0.52021	46.349	46.083	46.603	-0.26118					33	13	3	0	0	0	0.027866	1	4524	4524		35.201	0	1	717250	+		77256	22010	53870	53960	85269	85269					-0.03753129456242732
SVTSKKTG	8	Unmodified	_SVTSKKTG_					0	0	0		ENSG00000151725|ENST00000281453|CENPU;ENST00000392062.6_1_2:227729572-227729689:+|nuORF;nc|ENSG00000151725|Q71F23-3|CENPU	ENSG00000151725|ENST00000281453|CENPU	ENSG00000151725|ENST00000281453|CENPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2314758300781	2	404.232168	806.449782	0.41357	0.00016718	-3.1091	-0.0012568	-2.6955	-0.0010896	404.2302553298039	87.257	1.8567	87.078	86.349	88.206	-0.17875					110	44	3	0	0	0	1.0574	1	10619	10619		11.511	3.2797	1	982170			77257	6226	53871	53961	85270	85270					0.038815229720512434
SVTVFVKS	8	Unmodified	_SVTVFVKS_					0	0	0		ENST00000261439.8_1_4:38139186-38139444:+|nuORF	ENST00000261439.8_1_4:38139186-38139444:+|nuORF	ENST00000261439.8_1_4:38139186-38139444:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2552795410156	2	433.752736	865.490919	0.67907	0.00029455	3.9949	0.0017328	4.6739	0.0020273	433.75539772636915	103.03	2.4904	102.86	102.42	104.91	-0.17034					132	66	5	0	0	0	0.027866	1	12851	12851		29.15	1.2673	1	104790000			77258	11473	53872	53962	85271	85271					0.052792840115330364
SVVAPGTTL	9	Unmodified	_SVVAPGTTL_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.7430114746094	2	422.742368	843.470183	-0.77437	-0.00032736	2.6434	0.0011175	1.869	0.0007901	422.74346101364887	27.742	0.75627	27.742	27.435	28.191	0					67	19	5	0	0	0	0.92825	1	1569	1569		30.504	3.7075	1	1642200			77259	3474	53873	53963	85272	85272					0.04218693631867154
SVVAPGTTL	9	Unmodified	_SVVAPGTTL_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.742368	843.470183	-0.48873	-0.00020661	2.3482	0.00099267	1.8595	0.00078607	422.7433524774008	27.712	1.1755	27.699	27.314	28.49	-0.012983	0.022276	-0.00020454	NaN	30.504	76	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446900			77260	3474	53873	53963							0.04218693631867154
SVVAPGTTL	9	Unmodified	_SVVAPGTTL_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	422.742368	843.470183	-0.51837	-0.00021914	2.8918	0.0012225	2.3735	0.0010034	422.7434395747861	27.507	1.0101	27.588	27.319	28.329	0.081291	-0.08789	0.00025513	NaN	30.504	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1436000			77261	3474	53873	53963							0.04218693631867154
SVVELIKDL	9	Unmodified	_SVVELIKDL_					0	0	0			REV__ENSG00000164626|ENST00000359534|KCNK5	REV__ENSG00000164626|ENST00000359534|KCNK5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.315185546875	2	508.305332	1014.59611	-0.28027	-0.00014246	0.25255	0.00012837	-0.027715	-1.4088E-05	508.3054074959925	68.34	0.65176	68.34	68.102	68.754	0					24	16	2	0	0	0	0.024506	1	8250	8250		23.042	0	1	350050	+		77262	25781	53874	53964	85273	85273					0.08939780417267684
SVVFYQLY	8	Unmodified	_SVVFYQLY_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7606201171875	2	509.765843	1017.51713	-0.5593	-0.00028511	-4.2111	-0.0021467	-4.7704	-0.0024318	509.7637702657127	49.108	1.5791	49.007	48.358	49.938	-0.1008					162	41	7	0	0	0	0.68535	1	4954	4954		68.485	5.1784	1	49106000			77263	8613	53875	53965	85274	85274					0.009075531829921601
SVVHERVP	8	Unmodified	_SVVHERVP_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.7587585449219	2	461.758884	921.503215	-0.94944	-0.00043841	0.37117	0.00017139	-0.57828	-0.00026702	461.7590663876545	30.859	1.7979	30.859	30.426	32.224	0					107	43	4	0	0	0	0.74904	1	2027	2027		63.306	2.3343	1	18293000			77264	10268	53876	53966	85275	85275					0.0393232047457559
SVVHERVP	8	Unmodified	_SVVHERVP_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.7589416503906	2	461.758884	921.503215	-0.31671	-0.00014624	-0.31944	-0.0001475	-0.63615	-0.00029375	461.758750729972	30.801	1.7244	30.812	30.458	32.182	0.011797					116	41	4	0	0	0	0.71063	1	1981	1981		66.429	5.4573	1	19668000			77265	10268	53876	53966	85276	85276					0.0393232047457559
SVVIIKSPF	9	Unmodified	_SVVIIKSPF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.32342529296875	2	495.305136	988.595718	1.3112	0.00064947	2.1213	0.0010507	3.4325	0.0017001	495.3047513014426	64.16	0.28471	64.16	63.99	64.275	0					11	7	3	0	0	0	0.024535	1	7553	7553		12.207	0	1	220740			77266	6479	53877	53967	85277	85277					0.10096405488093296
SVVKDWVK	8	Unmodified	_SVVKDWVK_					0	0	0			REV__ENST00000607658.5_1_6:13306617-13307865:-|nuORF	REV__ENST00000607658.5_1_6:13306617-13307865:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.75390625	2	480.779285	959.544017	-0.83051	-0.00039929	1.7816	0.00085654	0.95105	0.00045724	480.77954367189375	47.743	0.93014	47.802	47.179	48.109	0.059097					50	27	3	0	0	0	0.027866	1	4794	4794		37.159	0	1	500900	+		77267	35954	53878	53968	85278	85278					0.06262661794175983
SVVKVPINV	9	Unmodified	_SVVKVPINV_					0	0	0			REV__ENSG00000178163|ENST00000326756|ZNF518B	REV__ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.8036193847656	2	477.80276	953.590967	-0.4955	-0.00023675	1.257	0.0006006	0.76151	0.00036385	477.8032080832783	91.154	0.6637	91.154	90.719	91.383	0					28	15	2	0	0	0	0.42604	1	11543	11543		64.207	7.4862	1	2700300	+		77268	27170	53879	53969	85279	85279					0.11231521345325746
SVVKVPINV	9	Unmodified	_SVVKVPINV_					0	0	0			REV__ENSG00000178163|ENST00000326756|ZNF518B	REV__ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	477.80364990234375	2	477.80276	953.590967	-0.86277	-0.00041223	1.5815	0.00075566	0.71876	0.00034343	477.8033641984418	91.06	0.7452	90.912	90.651	91.396	-0.1487					29	17	3	0	0	0	0.56934	1	11158	11158		54.776	1.4249	1	480300	+		77269	27170	53879	53969	85280	85280					0.11231521345325746
SVVKVVGSNI	10	Unmodified	_SVVKVVGSNI_					0	0	0		ENSG00000132821|ENST00000373461|VSTM2L	ENSG00000132821|ENST00000373461|VSTM2L	ENSG00000132821|ENST00000373461|VSTM2L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3070373535156	2	501.303124	1000.5917	-0.57123	-0.00028636	0.34858	0.00017474	-0.22265	-0.00011161	501.303298084767	31.377	0.37509	31.377	31.216	31.591	0					13	8	2	0	0	0	0.03519	1	2079	2079		47.657	0	1	87709			77270	4655	53880	53970	85281	85281					0.09142315994370165
SVVLKRVL	8	Unmodified	_SVVLKRVL_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.3132019042969	2	457.313295	912.612037	-0.59237	-0.0002709	-0.099151	-4.5343E-05	-0.69152	-0.00031624	457.3131968046075	44.332	2.3209	44.332	44.022	46.343	0					141	67	5	0	0	0	0.78609	2	4231	4231;4256		60.294	2.3071	1	17509000			77271	5928	53881	53971	85282;85283	85282					0.1522353144483759
SVVLKRVL	8	Unmodified	_SVVLKRVL_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.313232421875	2	457.313295	912.612037	-1.0544	-0.00048217	0.46745	0.00021377	-0.58691	-0.0002684	457.3134766275095	44.501	1.4861	44.356	44.065	45.551	-0.14471					106	43	4	0	0	0	0.46709	1	4226	4226		88.643	20.158	1	12904000			77272	5928	53881	53971	85284	85284					0.1522353144483759
SVVLKRVL	8	Unmodified	_SVVLKRVL_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.3132629394531	2	457.313295	912.612037	-0.018014	-8.2382E-06	-0.46122	-0.00021092	-0.47924	-0.00021916	457.313042497808	44.483	1.4308	44.52	44.142	45.573	0.0369					113	41	4	0	0	0	0.59392	2	4163	4163;4186		76.847	16.553	1	14121000			77273	5928	53881	53971	85285;85286	85285					0.1522353144483759
SVVLPCLGAR	10	Unmodified	_SVVLPCLGAR_					0	0	0		ENST00000341255.3_1_22:44891951-44892347:-|nuORF	ENST00000341255.3_1_22:44891951-44892347:-|nuORF	ENST00000341255.3_1_22:44891951-44892347:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.79266357421875	2	507.791869	1013.56919	-0.96601	-0.00049053	0.24876	0.00012632	-0.71725	-0.00036421	507.79213549344473	44.667	0.58755	44.667	44.382	44.97	0					23	16	2	0	0	0	0.03519	1	4271	4271		26.693	0	1	1132500			77274	12489	53882	53972	85287	85287					0.06294393325094916
SVVPVARGL	9	Unmodified	_SVVPVARGL_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7276611328125	2	449.279452	896.544351	-0.28038	-0.00012597	0.58722	0.00026383	0.30684	0.00013786	449.2793914844544	29.143	0.54838	29.222	28.979	29.527	0.078344					27	13	3	0	0	0	0.024354	1	1717	1717		57.811	13.28	1	350220	+		77275	29105	53883	53973	85288	85288					0.09194081514044683
SVVPVARGL	9	Unmodified	_SVVPVARGL_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.279452	896.544351	-1.0231	-0.00045967	1.9557	0.00087864	0.93254	0.00041897	449.2801484100432	29.306	0.62099	29.306	28.99	29.611	0	0.032454	0.00074488	NaN	55.504	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345880	+		77276	29105	53883	53973							0.09194081514044683
SVVPVARGL	9	Unmodified	_SVVPVARGL_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	449.279452	896.544351	-0.35201	-0.00015815	1.1732	0.00052707	0.82115	0.00036892	449.27972004111433	29.291	0.41688	29.294	29.092	29.509	0.0031357	0.01986	4.1758E-05	NaN	55.504	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344780	+		77277	29105	53883	53973							0.09194081514044683
SVVRCNGF	8	Unmodified	_SVVRCNGF_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.2172546386719	2	441.218537	880.422522	-0.46103	-0.00020342	-3.0628	-0.0013514	-3.5238	-0.0015548	441.21705085604447	37.793	1.0228	37.614	37.282	38.305	-0.17929					63	28	5	0	0	0	0.50239	2	3080	3056;3080		85.359	24.388	1	2727600			77278	3495	53884	53974	85289;85290	85290					-0.022472838399835382
SVVRCNGF	8	Unmodified	_SVVRCNGF_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.2168884277344	2	441.218537	880.422522	-1.0469	-0.00046192	-2.5585	-0.0011289	-3.6055	-0.0015908	441.2173053569544	37.763	0.96891	37.544	37.152	38.121	-0.2195					55	26	3	0	0	0	0.6248	1	3042	3042		73.975	10.668	1	2554800			77279	3495	53884	53974	85291	85291					-0.022472838399835382
SVVRCNGF	8	Unmodified	_SVVRCNGF_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.2172546386719	2	441.218537	880.422522	-0.70612	-0.00031155	-2.9495	-0.0013014	-3.6556	-0.0016129	441.21708641660956	37.762	1.2234	37.544	37.066	38.289	-0.21849					59	33	3	0	0	0	0.6248	2	3036	3036;3047		73.975	10.996	1	2231300			77280	3495	53884	53974	85292;85293	85292					-0.022472838399835382
SVVSLRPL	8	Unmodified	_SVVSLRPL_					0	0	0		nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	nc|ENSG00000134987|Q8NI36|WDR36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.78009033203125	2	435.774003	869.533452	-1.0488	-0.00045703	0.48519	0.00021143	-0.5636	-0.0002456	435.77404954313437	48.568	0.4251	48.292	48.08	48.505	-0.27598					17	11	2	0	0	0	0.027866	1	4823	4823		23.042	1.0826	1	213760			77281	4848	53885	53975	85294	85294					0.09346679139753178
SVVSSASMS	9	Unmodified	_SVVSSASMS_					0	0	0		ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	ENSG00000001629|ENST00000265742|ANKIB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2662658691406	2	427.699843	853.385133	0.090667	3.8778E-05	2.3149	0.00099008	2.4056	0.0010289	427.700913383116	42.313	0.54938	42.313	42.02	42.569	0					36	15	4	0	0	0	0.024457	1	3907	3907		21.96	6.3181	1	545260			77282	723	53886	53976	85295	85295					-0.04742419896251704
SVVVDAKPL	9	Unmodified	_SVVVDAKPL_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.27874755859375	2	464.279118	926.543683	-0.6087	-0.00028261	0.77626	0.0003604	0.16756	7.7794E-05	464.27940919538327	80.996	1.6108	80.996	80.626	82.237	0					75	39	3	0	0	0	0.29158	1	10107	10107		76.774	7.9873	1	3227100	+		77283	22797	53887	53977	85296	85296					0.07747242074310634
SVVVGVVSVL	10	Unmodified	_SVVVGVVSVL_					0	0	0		OR5A2|p.I209V|1|0.18|ENSG00000172324|chr11:59422329-59422329|T/C|missense_variant	OR5A2|p.I209V|1|0.18|ENSG00000172324|chr11:59422329-59422329|T/C|missense_variant	OR5A2|p.I209V|1|0.18|ENSG00000172324|chr11:59422329-59422329|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7358093261719	2	479.302593	956.590633	-1.7279	-0.00082817	1.9242	0.00092229	0.19635	9.4113E-05	479.3032697905907	60.179	0.5627	60.257	59.974	60.536	0.078884					32	14	3	0	0	0	0.03519	1	6802	6802		56.721	0	1	508490			77284	18922	53888	53978	85297	85297					0.11060101625469088
SVVVVCLSSI	10	Unmodified	_SVVVVCLSSI_					0	0	0			REV__ENST00000477132.1_1_2:37544174-37551396:-|nuORF	REV__ENST00000477132.1_1_2:37544174-37551396:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7619934082031	2	503.286085	1004.55762	1.2083	0.00060814	-2.3794	-0.0011975	-1.1711	-0.0005894	503.2846296156996	63.691	0.50587	63.691	63.485	63.99	0					21	13	2	0	0	0	0.03519	1	7434	7434		31.53	8.4873	1	340750	+		77285	33324	53889	53979	85298	85298					0.0555215151110815
SVWAAVTHAPK	11	Unmodified	_SVWAAVTHAPK_					0	0	0		ENST00000293217.9_3_17:73975210-73975420:-|nuORF	ENST00000293217.9_3_17:73975210-73975420:-|nuORF	ENST00000293217.9_3_17:73975210-73975420:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.8037719726562	2	583.819473	1165.62439	-0.83789	-0.00048918	-2.7813	-0.0016238	-3.6192	-0.002113	583.8186726763612	54.127	0.44973	53.882	53.717	54.166	-0.2453					20	14	2	0	0	0	0.024736	1	5706	5706		29.17	18.305	1	358510			77286	11805	53890	53980	85299	85299					0.04820523117223274
SVWFCGLWLFL	11	Unmodified	_SVWFCGLWLFL_					0	0	0			REV__BMP3|p.C16W|1|0.42|ENSG00000152785|chr4:81031332-81031332|C/G|missense_variant	REV__BMP3|p.C16W|1|0.42|ENSG00000152785|chr4:81031332-81031332|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2449951171875	3	457.570377	1369.6893	-0.38465	-0.00017601	-2.2894	-0.0010476	-2.674	-0.0012236	457.9036592855895	26.808	0.85064	26.64	26.379	27.23	-0.16816					27	19	2	0	0	0	0.024748	1	1414	1414		18.531	0	1	46347	+		77287	19212	53891	53981	85300	85300					0.019243815988602364
SVWKPPPVIPK	11	Unmodified	_SVWKPPPVIPK_					0	0	0		ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.3756103515625	2	624.379166	1246.74378	-0.033284	-2.0782E-05	0.98519	0.00061513	0.9519	0.00059435	624.3795088411415	100.6	0.55309	100.6	100.31	100.86	0					31	12	3	0	0	0	1.018	1	12880	12880		32.812	2.4947	1	835050			77288	2621	53892	53982	85301	85301					0.13027716741930817
SVWWAKRLR	9	Unmodified	_SVWWAKRLR_					0	0	0			REV__ENST00000595811.5_1_19:49506571-49507597:+|nuORF	REV__ENST00000595811.5_1_19:49506571-49507597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5146789550781	3	401.236608	1200.688	0.66126	0.00026532	-3.5601	-0.0014285	-2.8989	-0.0011631	401.2351402217161	24.289	0.85624	24.074	23.778	24.635	-0.2151					39	19	3	0	0	0	0.024456	1	1098	1098		35.152	11.629	1	334270	+		77289	35787	53893	53983	85302	85302					0.09567928344972643
SVYDGKLLI	9	Unmodified	_SVYDGKLLI_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2881774902344	2	504.292225	1006.5699	-0.28741	-0.00014494	0.13258	6.6858E-05	-0.15483	-7.808E-05	504.2920564050282	65.348	1.0415	65.348	64.909	65.95	0					84	28	5	0	0	0	0.42604	1	7730	7730		64.207	3.2353	1	8388100			77290	2728	53894	53984	85303	85303					0.06687511245809219
SVYDGKLLI	9	Unmodified	_SVYDGKLLI_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2829895019531	2	504.292225	1006.5699	-0.39047	-0.00019691	0.27652	0.00013945	-0.11396	-5.7467E-05	504.2921787169302	65.693	1.0908	65.42	65.09	66.181	-0.27282					84	29	4	0	0	0	0.37611	1	7742	7742		67.494	1.0644	1	7726800			77291	2728	53894	53984	85304	85304					0.06687511245809219
SVYDKELGPL	10	Unmodified	_SVYDKELGPL_					0	0	0			REV__ENST00000357276.8_2_2:217277309-217279408:+|nuORF	REV__ENST00000357276.8_2_2:217277309-217279408:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7981567382812	2	560.797872	1119.58119	-0.19383	-0.0001087	0.66132	0.00037087	0.4675	0.00026217	560.798190042787	16.845	0.84574	16.637	16.418	17.264	-0.20777					39	17	3	0	0	0	1.0508	2	117	105;117		39.253	0.23134	1	871720	+		77292	30826	53895	53985	85305;85306	85306					0.02618288549274439
SVYNGKGGLI	10	Unmodified	_SVYNGKGGLI_					0	0	0		ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.27294921875	2	504.279649	1006.54475	-0.18347	-9.2522E-05	0.22065	0.00011127	0.037178	1.8748E-05	504.27955500027883	66.119	0.53512	65.846	65.568	66.103	-0.27282					36	13	4	0	0	0	0.03519	1	7790	7790		51.193	10.62	1	1742700			77293	16129;2595	53896	53986	85307	85307					0.041734564432545085
SVYNGKGGLI	10	Unmodified	_SVYNGKGGLI_					0	0	0		ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	504.279649	1006.54475	0.5986	0.00030186	-0.8033	-0.00040509	-0.2047	-0.00010323	504.2790614041488	65.779	0.53593	65.779	65.529	66.065	0	-0.038533	-0.00060632	NaN	47.96	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1787900			77294	16129;2595	53896	53986							0.041734564432545085
SVYNGKGGLI	10	Unmodified	_SVYNGKGGLI_					0	0	0		ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENSG00000104756|ENST00000221200|KCTD9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	504.279649	1006.54475	-0.022706	-1.145E-05	-0.020384	-1.0279E-05	-0.04309	-2.1729E-05	504.27945052031595	65.798	0.6105	65.828	65.587	66.197	0.030106	0.010029	0.0001833	NaN	47.96	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1896800			77295	16129;2595	53896	53986							0.041734564432545085
SVYNIIALV	9	Unmodified	_SVYNIIALV_					0	0	0			REV__nc|ENSG00000214447|A6NFU0|FAM187A	REV__nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2955627441406	2	496.294768	990.574983	-0.42586	-0.00021135	1.6409	0.00081436	1.215	0.00060301	496.29540441561693	66.971	0.58054	66.689	66.456	67.037	-0.28149					45	15	4	0	0	0	0.83071	1	7952	7952		37.159	8.0096	1	1464700	+		77296	37131	53897	53987	85308	85308					0.07931815108429419
SVYRQRMA	8	Unmodified	_SVYRQRMA_					0	0	0		ENST00000381989.3_1_13:25005571-25008573:-|nuORF	ENST00000381989.3_1_13:25005571-25008573:-|nuORF	ENST00000381989.3_1_13:25005571-25008573:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.2480163574219	2	505.763643	1009.51273	0.053625	2.7122E-05	-2.034	-0.0010287	-1.9803	-0.0010016	505.7630891944977	20.318	0.43712	20.095	19.878	20.315	-0.22344					10	8	2	0	0	0	0.027866	1	486	486		17.365	0	1	9035.9			77297	13351	53898	53988	85309	85309					0.00835765488443485
SWDPIKYQP	9	Unmodified	_SWDPIKYQP_					0	0	0			REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.2742919921875	2	567.284931	1132.55531	-1.2146	-0.000689	0.60185	0.00034142	-0.61271	-0.00034758	567.2849860328786	21.488	1.003	21.488	21.195	22.198	0					45	20	3	0	0	0	0.024323	1	723	723		44.117	2.6902	1	42777	+		77298	31937	53899	53989	85310	85310					-0.005665609023481011
SWEYYASV	8	Unmodified	_SWEYYASV_					0	0	0		ENSG00000078098|ENST00000188790|FAP;ENST00000480044.5_1_2:163027491-163031488:-|nuORF;nc|ENSG00000078098|Q12884-2|FAP;ENST00000422436.5_1_2:163027491-163054158:-|nuORF	ENSG00000078098|ENST00000188790|FAP	ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2749328613281	2	502.721633	1003.42871	-0.83208	-0.00041831	1.0265	0.00051606	0.19444	9.775E-05	502.7232705007167	48.844	0.14439	48.911	48.835	48.979	0.066795					5	3	2	0	0	0	0.027866	1	4946	4946		42.474	19.432	1	55461			77299	1627	53900	53990	85311	85311					-0.07286487127475993
SWFLGFHSL	9	Unmodified	_SWFLGFHSL_					0	0	0			REV__ENST00000433206.6_1_17:37077860-37077962:+|nuORF	REV__ENST00000433206.6_1_17:37077860-37077962:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.2762451171875	2	547.276909	1092.53927	-1.0009	-0.00054777	0.12164	6.6573E-05	-0.87925	-0.00048119	547.2769545172373	30.718	3.6536	30.727	29.637	33.29	0.0086689					188	91	5	0	0	0	0.72875	1	1996	1996		44.117	1.7207	1	3706500	+		77300	32398	53901	53991	85312	85312					-0.0033022234856616706
SWFRAFHKVIW	11	Unmodified	_SWFRAFHKVIW_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7675476074219	3	492.934818	1475.78262	-0.35419	-0.00017459	-2.9317	-0.0014451	-3.2859	-0.0016197	492.9331351181334	52.827	0.24237	52.7	52.591	52.833	-0.12705					8	5	2	0	0	0	0.024821	1	5515	5515		14.086	0	1	122190	+		77301	37044	53902	53992	85313	85313					0.06376442096302526
SWGGYVFLI	9	Unmodified	_SWGGYVFLI_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.6576538085938	2	521.273835	1040.53312	-0.93461	-0.00048719	-3.2707	-0.0017049	-4.2053	-0.0021921	521.2720722762355	55.171	0.60217	55.025	54.686	55.288	-0.14609					26	12	3	0	0	0	0.024325	1	5876	5876		28.254	4.0515	1	495960			77302	4843	53903	53993	85314	85314					0.014472594198878141
SWGGYVFLI	9	Unmodified	_SWGGYVFLI_					0	0	0		nc|ENSG00000134910|P46977-2|STT3A;ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF	nc|ENSG00000134910|P46977-2|STT3A	nc|ENSG00000134910|P46977-2|STT3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.273835	1040.53312	0.054588	2.8455E-05	-4.3268	-0.0022554	-4.2722	-0.002227	521.2715943369337	55.233	0.55183	55.027	54.831	55.383	-0.20613	-0.099453	-0.00084269	NaN	28.254	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502050			77303	4843	53903	53993							0.014472594198878141
SWGLLLITL	9	Unmodified	_SWGLLLITL_					0	0	0		ENST00000359513.8_1_11:46679078-46680967:+|nuORF	ENST00000359513.8_1_11:46679078-46680967:+|nuORF	ENST00000359513.8_1_11:46679078-46680967:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.78411865234375	2	508.312961	1014.61137	-0.65245	-0.00033165	-0.66945	-0.00034029	-1.3219	-0.00067194	508.3124812306605	73.014	0.43653	73.014	72.782	73.219	0					18	10	2	0	0	0	0.024381	1	8884	8884		37.159	1.5408	1	120490			77304	12740	53904	53994	85315	85315					0.10464692005132292
SWGNQDDYQL	10	Unmodified	_SWGNQDDYQL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.257568359375	2	613.259642	1224.50473	-1.2331	-0.00075623	-1.4735	-0.00090362	-2.7066	-0.0016599	613.2586060859461	72.595	0.72801	72.318	72.028	72.756	-0.2769					47	16	4	0	0	0	1.0002	1	8517	8517		45.972	5.1941	1	1003500			77305	1435	53905	53995	85316	85316					-0.09854135018008492
SWGPLWGSEV	10	Unmodified	_SWGPLWGSEV_					0	0	0		ENST00000455565.5_2_17:43697992-43698448:+|nuORF	ENST00000455565.5_2_17:43697992-43698448:+|nuORF	ENST00000455565.5_2_17:43697992-43698448:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2928466796875	2	559.269281	1116.52401	-0.45241	-0.00025302	3.5966	0.0020115	3.1442	0.0017584	559.2712237846189	76.194	0.66592	75.921	75.582	76.248	-0.27266					25	16	2	0	0	0	0.03519	1	9069	9069		66.429	28.618	1	190740			77306	14583	53906	53996	85317	85317					-0.029591339364287705
SWGPWCPLV	9	Unmodified	_SWGPWCPLV_					0	0	0			REV__AluSx_dup100421|chr17:75147717-75148024:+|1.3964843871730233|0.0059828671783624|7.87|522.0|21|3|anti-sense	REV__AluSx_dup100421|chr17:75147717-75148024:+|1.3964843871730233|0.0059828671783624|7.87|522.0|21|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3035278320312	2	522.752213	1043.48987	-0.25779	-0.00013476	-2.4952	-0.0013043	-2.7529	-0.0014391	522.7506680252981	84.649	0.61777	84.649	84.341	84.958	0					21	14	2	0	0	0	0.024386	1	10638	10638		42.474	10.52	1	171850	+		77307	19122	53907	53997	85318	85318					-0.030132536290466305
SWGRGELAAS	10	Unmodified	_SWGRGELAAS_					0	0	0		ENST00000361981.7_1_X:153127328-153128099:-|nuORF	ENST00000361981.7_1_X:153127328-153128099:-|nuORF	ENST00000361981.7_1_X:153127328-153128099:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2796020507812	2	517.256705	1032.49886	0.28753	0.00014872	-1.3268	-0.00068627	-1.0392	-0.00053755	517.2560702815338	81.906	1.6268	81.713	81.254	82.881	-0.19334					76	37	4	0	0	0	0.03519	1	9935	9935		25.574	7.312	1	576780			77308	12811	53908	53998	85319	85319					-0.0160918873900755
SWHLSKYDG	9	Unmodified	_SWHLSKYDG_					0	0	0			REV__nc|ENSG00000143420|O43768-9|ENSA	REV__nc|ENSG00000143420|O43768-9|ENSA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7894287109375	2	546.759081	1091.50361	-1.2086	-0.0006608	3.8531	0.0021067	2.6445	0.0014459	546.761730655038	33.341	0.92562	33.175	32.476	33.401	-0.16565					29	22	2	0	0	0	0.024374	1	2256	2256		49.442	10.189	1	159780	+		77309	36730	53909	53999	85320	85320					-0.038483045962493634
SWHLSKYDG	9	Unmodified	_SWHLSKYDG_					0	0	0			REV__nc|ENSG00000143420|O43768-9|ENSA	REV__nc|ENSG00000143420|O43768-9|ENSA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.759081	1091.50361	-1.2091	-0.00066111	-2.459	-0.0013445	-3.6681	-0.0020056	546.7572390973868	32.98	0.34704	32.98	32.827	33.174	0	-0.1015	-0.0023003	NaN	49.442	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23284	+		77310	36730	53909	53999							-0.038483045962493634
SWHLSKYDG	9	Unmodified	_SWHLSKYDG_					0	0	0			REV__nc|ENSG00000143420|O43768-9|ENSA	REV__nc|ENSG00000143420|O43768-9|ENSA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.759081	1091.50361	-0.57367	-0.00031366	-2.8946	-0.0015827	-3.4683	-0.0018963	547.2589497584441	32.823	0.30946	32.886	32.653	32.962	0.062885	-0.19591	-0.0027766	NaN	49.442	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46266	+		77311	36730	53909	53999							-0.038483045962493634
SWIGFYGR	8	Unmodified	_SWIGFYGR_					0	0	0			REV__ENST00000517901.5_1_5:160972272-160973700:-|nuORF	REV__ENST00000517901.5_1_5:160972272-160973700:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7793273925781	2	493.248152	984.481751	0.06316	3.1153E-05	4.3931	0.0021669	4.4562	0.002198	493.2504817784963	49.878	0.14629	49.727	49.671	49.817	-0.1512					5	3	2	0	0	0	0.027866	1	5163	5163		42.474	8.9589	1	120810	+		77312	24440	53910	54000	85321	85321					-0.01111064554152108
SWIGFYGR	8	Unmodified	_SWIGFYGR_					0	0	0			REV__ENST00000517901.5_1_5:160972272-160973700:-|nuORF	REV__ENST00000517901.5_1_5:160972272-160973700:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.248152	984.481751	0.31758	0.00015664	2.693	0.0013283	3.0106	0.001485	493.25041048652815	49.69	0.14915	49.69	49.582	49.731	0	-0.018752	-0.0010192	NaN	25.45	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33670	+		77313	24440	53910	54000							-0.01111064554152108
SWIVYKVKSI	10	Unmodified	_SWIVYKVKSI_					0	0	0			REV__nc|ENSG00000122218|P53621-2|COPA	REV__nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	408.2437744140625	3	408.244658	1221.71214	-0.57661	-0.0002354	-2.1176	-0.0008645	-2.6942	-0.0010999	408.2437329724982	44.286	1.0474	44.181	43.889	44.937	-0.10468					79	27	5	0	0	0	0.70466	1	4124	4124		66.962	4.8545	1	4715500	+		77314	22632	53911	54001	85322	85322					0.11015723987975434
SWIWAAVW	8	Unmodified	_SWIWAAVW_					0	0	0		ENSG00000269433|ENST00000599405|OPN1MW3;ENSG00000268221|ENST00000595290|OPN1MW;ENSG00000166160|ENST00000369929|OPN1MW2;ENSG00000102076|ENST00000369951|OPN1LW	ENSG00000269433|ENST00000599405|OPN1MW3	ENSG00000269433|ENST00000599405|OPN1MW3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.2726135253906	2	509.760895	1017.50724	0.19505	9.9429E-05	4.1046	0.0020924	4.2996	0.0021918	509.7626545537731	50.614	0.55219	50.433	50.245	50.797	-0.18071					21	14	2	0	0	0	0.027866	1	5131	5131		21.702	0.7554	1	203910			77315	2376	53912	54002	85323	85323					-0.0008159003174341706
SWLSVLCVL	9	Unmodified	_SWLSVLCVL_					0	0	0		ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2847595214844	2	510.283346	1018.55214	0.058477	2.984E-05	3.5459	0.0018094	3.6043	0.0018392	510.28478869053083	57.2	1.0065	57.036	56.387	57.393	-0.16432					97	27	6	0	0	0	0.40179	2	6405	6405;6418		65.803	4.8312	1	5646500			77316	6386	53913	54003	85324;85325	85324					0.043604727192928294
SWMPHPLV	8	Unmodified	_SWMPHPLV_					0	0	0		ENST00000487841.5_1_6:166743698-166755969:-|nuORF	ENST00000487841.5_1_6:166743698-166755969:-|nuORF	ENST00000487841.5_1_6:166743698-166755969:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.7484436035156	2	483.746931	965.479308	-0.15459	-7.4781E-05	3.5768	0.0017303	3.4222	0.0016555	483.7485057417841	68.501	0.98721	68.501	68.179	69.166	0					61	25	3	0	0	0	0.9224	1	8210	8210		49.211	1.2952	1	3879100			77317	15375	53914	54004	85326	85326					-0.004812362834513806
SWNWQSKG	8	Unmodified	_SWNWQSKG_					0	0	0			REV__ENST00000580633.5_1_17:56406966-56414977:+|nuORF	REV__ENST00000580633.5_1_17:56406966-56414977:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.7460632324219	2	496.732866	991.451179	-0.50898	-0.00025283	-3.5546	-0.0017657	-4.0636	-0.0020185	496.7309791782342	26.005	0.54695	25.982	25.777	26.324	-0.023087					37	12	5	0	0	0	0.027866	1	1252	1252		40.573	14.999	1	389060	+		77318	35522	53915	54005	85327	85327					-0.04488842939190363
SWPGGRNSRVK	11	Unmodified	_SWPGGRNSRVK_					0	0	0			REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3367309570312	2	622.336353	1242.65815	-2.2817	-0.00142	2.6513	0.00165	0.36961	0.00023002	622.3378971321013	110.2	0.79791	110.06	109.83	110.62	-0.13983					102	32	4	0	0	0	1.0238	1	13518	13518		31.53	0	1	1465400	+		77319	31746	53916	54006	85328	85328					0.04652944608983489
SWQEFYKVCL	10	Unmodified	_SWQEFYKVCL_					0	0	0			REV__nc|ENSG00000166167|Q9Y297-2|BTRC	REV__nc|ENSG00000166167|Q9Y297-2|BTRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7377624511719	3	434.877758	1301.61144	-0.35461	-0.00015421	0.2782	0.00012098	-0.076412	-3.323E-05	434.8781439684507	40.885	0.3076	40.749	40.561	40.869	-0.13553					11	7	2	0	0	0	0.03519	1	3581	3581		27.047	1.1556	1	40850	+		77320	25983	53917	54007	85329	85329					-0.027296760571516643
SWQISLQERSA	11	Unmodified	_SWQISLQERSA_					0	0	0			REV__ENSG00000101842|ENST00000217957|VSIG1	REV__ENSG00000101842|ENST00000217957|VSIG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7377624511719	3	435.557964	1303.65206	-0.27449	-0.00011956	0.20945	9.1229E-05	-0.065035	-2.8327E-05	435.55805493549155	41.049	1.2872	40.913	40.418	41.705	-0.13553					52	33	2	0	0	0	0.02476	1	3581	3581		32.034	17.34	1	107520	+		77321	21257	53918	54008	85330	85330					0.012383815868133752
SWRLPALK	8	Unmodified	_SWRLPALK_					0	0	0		ENST00000335793.3_1_17:71308118-71308178:-|nuORF	ENST00000335793.3_1_17:71308118-71308178:-|nuORF	ENST00000335793.3_1_17:71308118-71308178:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.77386474609375	2	485.795269	969.575986	-0.27119	-0.00013174	-4.2607	-0.0020698	-4.5319	-0.0022016	485.7930255847886	27.383	0.64151	27.141	26.911	27.553	-0.24217					29	14	3	0	0	0	0.027866	1	1525	1525		79.451	23.947	1	303640			77322	12398	53919	54009	85331	85331					0.08998074267981337
SWRQRPSVRLL	11	Unmodified	_SWRQRPSVRLL_					0	0	0			REV__ENST00000380701.7_1_9:15784633-15846724:+|nuORF	REV__ENST00000380701.7_1_9:15784633-15846724:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	466.6084289550781	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.944	1	99.938	99.438	100.44	-0.0050888								0	0	0	1.3485	1	12707	12707		23.378	4.4116	1		+		77323	31492	53920	54010	85332	85332					0.12262041493931974
SWRQRPSVRLL	11	Unmodified	_SWRQRPSVRLL_					0	0	0			REV__ENST00000380701.7_1_9:15784633-15846724:+|nuORF	REV__ENST00000380701.7_1_9:15784633-15846724:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.60931396484375	3	466.608993	1396.80515	0.78149	0.00036465	-2.8481	-0.001329	-2.0667	-0.00096432	466.60760028685866	100.08	2.3153	99.953	99.233	101.55	-0.12504					111	64	3	0	0	0	1.0712	1	12433	12433		19.263	0.73163	1	757670	+		77324	31492	53920	54010	85333	85333					0.12262041493931974
SWRRTTRSSGR	11	Unmodified	_SWRRTTRSSGR_					0	0	0			REV__ENST00000450717.7_1_19:11144862-11145710:+|nuORF	REV__ENST00000450717.7_1_19:11144862-11145710:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2347412109375	3	450.576352	1348.70723	-0.080836	-3.6423E-05	1.0248	0.00046177	0.94401	0.00042535	450.576767078834	28.325	0.40848	28.406	28.248	28.657	0.080811					12	9	2	0	0	0	0.024751	1	1571	1571		21.78	0	1	69212	+		77325	32709	53921	54011	85334	85334					0.04682232897926042
SWRSNLVSH	9	Unmodified	_SWRSNLVSH_					0	0	0		ENSG00000263002|ENST00000426739|ZNF234	ENSG00000263002|ENST00000426739|ZNF234	ENSG00000263002|ENST00000426739|ZNF234	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2692260742188	2	543.277972	1084.54139	-0.61522	-0.00033424	0.74607	0.00040532	0.13085	7.1087E-05	543.2782904117558	70.168	0.54257	69.901	69.578	70.121	-0.26725					23	12	3	0	0	0	0.024418	1	8182	8182		45.972	15.655	1	96144			77326	10962	53922	54012	85335	85335					0.0025020638922796934
SWSGGNVISK	10	Unmodified	_SWSGGNVISK_					0	0	0			REV__ENSG00000140396|ENST00000452400|NCOA2	REV__ENSG00000140396|ENST00000452400|NCOA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7686767578125	2	517.766906	1033.51926	-0.51776	-0.00026808	0.89349	0.00046262	0.37573	0.00019454	517.7672461033975	52.274	0.74023	52.274	52.049	52.789	0					49	18	4	0	0	0	0.54901	1	5595	5595		82.75	5.4329	1	2303600	+		77327	24013	53923	54013	85336	85336					0.0038398192079966975
SWSLSGSNAN	10	Unmodified	_SWSLSGSNAN_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8373718261719	2	511.73052	1021.44649	-0.43689	-0.00022357	4.3422	0.002222	3.9053	0.0019985	511.73466459160534	45.912	0.19658	45.963	45.899	46.096	0.051395					8	5	2	0	0	0	0.03519	1	4429	4429		47.657	3.5405	1	67519	+		77328	28046	53924	54014	85337	85337					-0.06337771872620124
SWSVLGMLH	9	Unmodified	_SWSVLGMLH_					0	0	0			REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.8057250976562	2	515.262945	1028.51134	-0.70706	-0.00036432	-1.8233	-0.00093948	-2.5304	-0.0013038	515.2611204401973	56.636	0.47602	56.471	56.165	56.641	-0.16431					27	12	3	0	0	0	0.024443	1	6287	6287		26.796	7.6926	1	149090	+		77329	24652	53925	54015	85338	85338					-0.0017786860030355456
SWTDLLLKN	9	Unmodified	_SWTDLLLKN_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3017578125	2	545.300581	1088.58661	0.46477	0.00025344	1.6124	0.00087925	2.0772	0.0011327	545.3015511392318	63.271	1.4733	63.325	62.76	64.233	0.054104					111	34	4	0	0	0	0.20967	1	7303	7303		87.754	1.8925	1	22677000			77330	7639	53926	54016	85339	85339					0.045860121317673475
SWVCLVIV	8	Carbamidomethyl (C)	_SWVC(Carbamidomethyl (C))LVIV_	SWVC(1)LVIV		SWVC(75)LVIV		0	1	0		ENST00000409785.8_1_2:85280528-85280699:+|nuORF	ENST00000409785.8_1_2:85280528-85280699:+|nuORF	ENST00000409785.8_1_2:85280528-85280699:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2679443359375	2	488.270238	974.525924	-0.24673	-0.00012047	-4.1826	-0.0020422	-4.4293	-0.0021627	488.26828955129054	43.545	1.3545	43.575	43.116	44.47	0.030823					102	37	5	0	0	0	0.61897	1	4024	4024		74.517	6.0319	1	11714000			77331	13790	53927	54017	85340	85340	188				0.03764203547814304
SWVTPESCLY	10	Unmodified	_SWVTPESCLY_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.770751953125	2	592.768257	1183.52196	-0.42804	-0.00025373	3.0934	0.0018337	2.6654	0.00158	592.7698203515453	70.947	0.67659	70.676	70.471	71.147	-0.27184					32	15	3	0	0	0	0.75995	1	8278	8278		63.306	1.1989	1	1132600			77332	5827	53928	54018	85341	85341					-0.06245930736531591
SWYVINLWCFW	11	Unmodified	_SWYVINLWCFW_					0	0	0			REV__ENST00000392350.7_1_2:190635870-190636011:-|nuORF	REV__ENST00000392350.7_1_2:190635870-190636011:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.2806091308594	3	506.240919	1515.70093	0.2727	0.00013805	2.125	0.0010758	2.3977	0.0012138	506.2425505192517	24.42	0.32122	24.499	24.41	24.731	0.078344					11	6	2	0	0	0	0.024846	1	1037	1037		21.78	18.754	1	51662	+		77333	31603	53929	54019	85342	85342					-0.036294213778091944
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.2664794921875	2	519.266739	1036.51892	-0.1101	-5.7173E-05	-0.18093	-9.3952E-05	-0.29103	-0.00015112	519.2665660947645	51.308	0.87946	51.308	50.992	51.871	0					55	24	5	0	0	0	0.14181	1	5429	5429		101.25	28.373	1	3583200			77334	5962	53930	54020	85343	85343					0.00212562200931643
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.2660522460938	2	519.266739	1036.51892	-0.66763	-0.00034668	0.38041	0.00019753	-0.28722	-0.00014915	519.2668670355661	51.491	0.55775	51.343	51.084	51.642	-0.14735					33	15	3	0	0	0	0.062622	2	5429	5429;5441		124.08	50.105	1	3091400			77335	5962	53930	54020	85344;85345	85344					0.00212562200931643
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.26611328125	2	519.266739	1036.51892	-1.2823	-0.00066584	0.64563	0.00033525	-0.63664	-0.00033059	519.2671112800522	51.119	0.85687	51.206	50.926	51.783	0.087006					52	23	5	0	0	0	0.041068	2	5336	5336;5348		132.76	55.911	1	3127200			77336	5962	53930	54020	85346;85347	85346					0.00212562200931643
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2617797851562	2	519.266739	1036.51892	0.72266	0.00037525	-0.65674	-0.00034102	0.065921	3.4231E-05	519.2663655891135	51.314	0.79163	51.202	50.973	51.765	-0.11163					51	20	4	0	0	0	0.32064	1	5269	5269		72.879	19.528	1	2398300			77337	5962	53930	54020	85348	85348					0.00212562200931643
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2655029296875	2	519.266739	1036.51892	-0.87902	-0.00045645	0.85514	0.00044405	-0.023877	-1.2398E-05	519.267165154951	51.621	0.85817	51.347	51.08	51.938	-0.27433					48	22	3	0	0	0	0.32064	1	5303	5303		72.879	23.438	1	2589400			77338	5962	53930	54020	85349	85349					0.00212562200931643
SYAEALREV	9	Unmodified	_SYAEALREV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2619018554688	2	519.266739	1036.51892	1.2317	0.00063958	-1.3055	-0.00067793	-0.073856	-3.8351E-05	519.2660587801442	51.422	0.8363	51.238	50.942	51.778	-0.18404					47	21	3	0	0	0	0.33603	1	5273	5273		70.816	29.39	1	2399400			77339	5962	53930	54020	85350	85350					0.00212562200931643
SYCEQKSKNF	10	Unmodified	_SYCEQKSKNF_					0	0	0			REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.8587646484375	3	411.857134	1232.54957	-0.35326	-0.00014549	4.2001	0.0017299	3.8469	0.0015844	411.8587736491943	56.221	0.85943	56.065	55.748	56.608	-0.15656					57	21	4	0	0	0	1.0814	1	6080	6080		35.178	2.1388	1	1826900	+		77340	26253	53931	54021	85351	85351					-0.057400274763040215
SYCLLHLQL	9	Unmodified	_SYCLLHLQL_					0	0	0			REV__ENSG00000145198|ENST00000691901|VWA5B2	REV__ENSG00000145198|ENST00000691901|VWA5B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2752075195312	2	545.291702	1088.56885	-0.1354	-7.3833E-05	0.29772	0.00016234	0.16232	8.851E-05	545.2895721585006	77.773	0.45364	77.562	77.461	77.914	-0.21087					14	10	2	0	0	0	0.023181	1	9597	9597		94.006	19.751	1	206610	+		77341	24386	53932	54022	85352	85352					0.0281097360525564
SYCNNKLSLG	10	Carbamidomethyl (C)	_SYC(Carbamidomethyl (C))NNKLSLG_	SYC(1)NNKLSLG		SYC(72)NNKLSLG		0	1	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.2789916992188	2	578.27678	1154.53901	0.057383	3.3183E-05	4.3036	0.0024887	4.361	0.0025219	578.2791835847098	108.38	0.34079	108.38	108.18	108.52	0					41	16	3	0	0	0	0.64538	1	13874	13874		71.877	9.7701	1	4956200			77342	1141	53933	54023	85353	85353	18				-0.03208010130742878
SYDEDKNDP	9	Unmodified	_SYDEDKNDP_					0	0	0		ENSG00000073910|ENST00000542859|FRY;FRY|p.E2607*|1|0.4|ENSG00000073910|chr13:32265487-32265488|-/T|frameshift_variant;FRY|p.L1623Pfs*3|1|0.48|ENSG00000073910|chr13:32224330-32224331|-/C|frameshift_variant	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7532958984375	2	541.717276	1081.42	-1.0453	-0.00056628	-2.449	-0.0013266	-3.4943	-0.0018929	541.7155052237787	38.299	0.32319	38.078	37.898	38.221	-0.22148					15	9	2	0	0	0	0.024436	1	3172	3172		23.042	0	1	141670			77343	1519	53934	54024	85354	85354					-0.11745505554608826
SYDEKVDVF	9	Unmodified	_SYDEKVDVF_					0	0	0		nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1	nc|ENSG00000106683|P53667-4|LIMK1	nc|ENSG00000106683|P53667-4|LIMK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.28125	2	551.258579	1100.50261	-0.13035	-7.1858E-05	4.0543	0.002235	3.924	0.0021631	551.26136673058	61.944	0.34905	61.687	61.588	61.937	-0.25725					9	8	2	0	0	0	0.024381	1	6947	6947		37.159	10.466	1	129820			77344	2809	53935	54025	85355	85355					-0.04362563755807969
SYDKQKEDEQ	10	Unmodified	_SYDKQKEDEQ_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5472717285156	3	423.857968	1268.55207	-0.43751	-0.00018544	0.50259	0.00021303	0.065076	2.7583E-05	424.19271172204225	29.538	0.29241	29.366	29.113	29.406	-0.17258					8	6	2	0	0	0	0.03519	1	1783	1783		12.433	0.50046	1	16105	+		77345	21249	53936	54026	85356	85356					-0.07145900537670968
SYDQKKAPL	9	Unmodified	_SYDQKKAPL_					0	0	0		nc|ENSG00000120471|Q9HCN2-4|TP53AIP1;ENSG00000120471|ENST00000531399|TP53AIP1	nc|ENSG00000120471|Q9HCN2-4|TP53AIP1	nc|ENSG00000120471|Q9HCN2-4|TP53AIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2872314453125	2	525.284931	1048.55531	2.8641	0.0015045	1.5512	0.00081484	4.4153	0.0023193	525.2856038175687	18.642	0.79388	18.399	18.175	18.968	-0.24256					30	15	3	0	0	0	0.6504	1	303	303		49.442	1.7842	1	540020			77346	3818	53937	54027	85357	85357					0.032974390976505674
SYDWSSPL	8	Unmodified	_SYDWSSPL_					0	0	0			REV__nc|ENSG00000163931|P29401-2|TKT	REV__nc|ENSG00000163931|P29401-2|TKT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.2796630859375	2	477.713808	953.413062	-1.0854	-0.00051849	-2.7757	-0.001326	-3.861	-0.0018445	477.71233301602547	37.481	0.46897	37.262	37.037	37.506	-0.2195					25	11	3	0	0	0	0.027866	1	3013	3013		52.299	8.1824	1	423260	+		77347	36858	53938	54028	85358	85358					-0.06550773644516994
SYEDIKNVV	9	Unmodified	_SYEDIKNVV_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7742919921875	2	533.774396	1065.53424	-0.53891	-0.00028766	0.35791	0.00019104	-0.181	-9.6614E-05	533.7745057007689	50.856	1.1847	50.707	50.39	51.575	-0.14916					94	33	4	0	0	0	0.59099	1	5309	5309		53.351	0	1	12060000			77348	6506	53939	54029	85359	85359					0.004094289981367183
SYFAKIKR	8	Unmodified	_SYFAKIKR_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.79827880859375	2	506.800552	1011.58655	-0.088918	-4.5064E-05	-4.3238	-0.0021913	-4.4127	-0.0022364	506.79838208765176	20.366	1.2294	20.142	19.533	20.762	-0.22344					50	24	4	0	0	0	1.0338	1	532	532		31.955	0	1	1390200	+		77349	20440	53940	54030	85360	85360					0.08122056922411502
SYFCEPLLV	9	Unmodified	_SYFCEPLLV_					0	0	0			REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	REV__nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8135375976562	2	535.764986	1069.51542	-1.5485	-0.00082964	-3.3054	-0.0017709	-4.8539	-0.0026006	535.762936861511	51.486	1.2543	51.573	50.82	52.074	0.087006					76	34	3	0	0	0	0.024412	1	5417	5417		40.573	13.777	1	650670	+		77350	21445	53941	54031	85361	85361					-0.016558238972720574
SYFEEKLSI	9	Unmodified	_SYFEEKLSI_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2689819335938	2	558.284597	1114.55464	-0.31038	-0.00017328	-2.8862	-0.0016113	-3.1966	-0.0017846	558.2828261093624	33.389	0.54223	33.189	32.937	33.479	-0.20019					19	13	2	0	0	0	0.024541	1	2347	2347		16.473	0	1	270950	+		77351	19428	53942	54032	85362	85362					0.0019459965797068435
SYFKYKEAYE	10	Unmodified	_SYFKYKEAYE_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.4970703125	3	443.211683	1326.61322	-1.1107	-0.00049226	0.8045	0.00035656	-0.30617	-0.0001357	443.5462919584284	29.417	0.39197	29.172	28.881	29.273	-0.24524					22	8	4	0	0	0	0.03519	1	1801	1801		65.157	6.9273	1	55774			77352	9199	53943	54033	85363	85363					-0.037023437675770765
SYFQSLDPW	9	Unmodified	_SYFQSLDPW_					0	0	0		ENSG00000164082|ENST00000395052|GRM2;GRM2|p.Y528*|1|0.28|ENSG00000164082|chr3:51715355-51715356|TA/-|frameshift_variant	ENSG00000164082|ENST00000395052|GRM2	ENSG00000164082|ENST00000395052|GRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.8174438476562	2	571.761289	1141.50803	1.4651	0.0008377	-1.5054	-0.00086074	-0.040302	-2.3043E-05	571.7603959662229	19.771	0.62736	19.837	19.587	20.215	0.066195					18	12	2	0	0	0	0.024523	1	402	402		37.159	0	1	32513			77353	7207	53944	54034	85364	85364					-0.05706840173343153
SYFSFWWWWW	10	Unmodified	_SYFSFWWWWW_					0	0	0		ENST00000300134.7_1_12:57504946-57505147:-|nuORF	ENST00000300134.7_1_12:57504946-57505147:-|nuORF	ENST00000300134.7_1_12:57504946-57505147:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3060913085938	3	527.564391	1579.67134	-0.72278	-0.00038131	0.73702	0.00038882	0.014243	7.5139E-06	527.564803015252	27.787	0.73278	27.781	27.508	28.241	-0.0055485					51	18	5	0	0	0	0.03519	1	1606	1606		7.8045	1.4836	1	931640			77354	11896	53945	54035	85365	85365					-0.09530617331643043
SYGDLLHNSIY	11	Unmodified	_SYGDLLHNSIY_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.8708190917969	3	427.875182	1280.60372	0.99898	0.00042744	-2.0861	-0.00089258	-1.0871	-0.00046514	427.87376843020553	36.995	1.0311	36.786	36.323	37.354	-0.2092					31	25	2	0	0	0	0.024739	1	2871	2871		17.167	8.473	1	144830			77355	6133	53946	54036	85366	85366					-0.025361120530988046
SYGTMECAH	9	Unmodified	_SYGTMECAH_					0	0	0		ENST00000389045.7_1_2:230654445-230655869:-|nuORF	ENST00000389045.7_1_2:230654445-230655869:-|nuORF	ENST00000389045.7_1_2:230654445-230655869:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.73809814453125	2	499.688952	997.363352	-0.14421	-7.2059E-05	-3.27	-0.001634	-3.4142	-0.0017061	499.68877002650476	33.781	0.2374	33.557	33.362	33.6	-0.22412					8	5	2	0	0	0	0.024466	1	2416	2416		25.45	13.939	1	50726			77356	13374	53947	54037	85367	85367					-0.13543547916481202
SYIHILQA	8	Unmodified	_SYIHILQA_					0	0	0		ENSG00000187747|ENST00000345043|OR52B6	ENSG00000187747|ENST00000345043|OR52B6	ENSG00000187747|ENST00000345043|OR52B6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.763916015625	2	472.763635	943.512717	0.64777	0.00030624	1.0532	0.0004979	1.7009	0.00080414	472.76375991761597	101.87	0.44177	101.74	101.54	101.98	-0.13156					19	10	2	0	0	0	0.94517	1	12647	12647		45.952	0	1	212560			77357	9656	53948	54038	85368	85368					0.03870088760095314
SYKGNVILL	9	Unmodified	_SYKGNVILL_					0	0	0			REV__GAK|p.R270L|1|0.24|ENSG00000178950|chr4:893942-893942|C/A|missense_variant	REV__GAK|p.R270L|1|0.24|ENSG00000178950|chr4:893942-893942|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.78692626953125	2	503.800217	1005.58588	0.64935	0.00032714	-1.4715	-0.00074136	-0.82219	-0.00041422	503.79910650114186	54.173	0.78907	54.271	53.907	54.696	0.098011					46	22	4	0	0	0	0.024374	1	5856	5856		32.812	0	1	466440	+		77358	36058	53949	54039	85369	85369					0.08331217482725606
SYKHRKQF	8	Unmodified	_SYKHRKQF_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2696533203125	2	547.298707	1092.58286	-0.73159	-0.0004004	-1.8988	-0.0010392	-2.6304	-0.0014396	547.2973557976527	39.056	0.61178	38.833	38.538	39.149	-0.22311					33	16	3	0	0	0	0.027866	1	3257	3257		21.96	8.5058	1	753000	+		77359	26810;37445	53950	54040	85370	85370					0.04027387148562411
SYKQHKSD	8	Unmodified	_SYKQHKSD_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7415466308594	2	496.743431	991.472308	-1.1579	-0.0005752	-3.3362	-0.0016572	-4.4941	-0.0022324	496.7416700945716	26.127	0.94948	25.963	25.716	26.666	-0.16331					84	26	4	0	0	0	0.94517	1	1332	1332		45.952	3.5558	1	7449900	+		77360	23585	53951	54041	85371	85371					-0.023768776303313643
SYKSQPIFV	9	Unmodified	_SYKSQPIFV_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2583618164062	2	534.78985	1067.56515	0.072338	3.8685E-05	1.1558	0.00061812	1.2282	0.00065681	534.7914159458782	65.995	0.54214	65.995	65.681	66.224	0					19	13	2	0	0	0	0.024466	1	7873	7873		25.45	1.2474	1	381610	+		77361	24738	53952	54042	85372	85372					0.034066271030496864
SYKYLSFWFF	10	Unmodified	_SYKYLSFWFF_					0	0	0			REV__ENST00000607510.1_1_3:44379447-44379723:-|nuORF	REV__ENST00000607510.1_1_3:44379447-44379723:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.2751770019531	3	463.228897	1386.66486	-0.69545	-0.00032215	0.051601	2.3903E-05	-0.64385	-0.00029825	463.2289422361744	20.888	1.4283	20.67	20.073	21.501	-0.21774					62	28	3	0	0	0	0.03519	1	600	600		26.063	2.6855	1	93494	+		77362	35953	53953	54043	85373	85373					-0.013005552830009037
SYLCLLPTL	9	Unmodified	_SYLCLLPTL_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.79510498046875	2	511.783179	1021.5518	-0.11466	-5.8681E-05	3.3463	0.0017126	3.2316	0.0016539	511.7848602638031	37.628	0.49276	37.435	37.269	37.761	-0.193					21	11	3	0	0	0	0.024539	1	3083	3083		20.947	5.3051	1	424240			77363	961	53954	54044	85374	85374					0.0418905299944754
SYLCSKDGDIF	11	Unmodified	_SYLCSKDGDIF_					0	0	0		ENST00000459791.5_1_2:219487363-219492999:+|nuORF;ENST00000469493.5_1_2:219472784-219492999:+|nuORF;ENST00000473443.5_1_2:219483577-219498591:+|nuORF;ENSG00000115556|ENST00000450993|PLCD4	ENST00000459791.5_1_2:219487363-219492999:+|nuORF	ENST00000459791.5_1_2:219487363-219492999:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2460021972656	3	416.525273	1246.55399	-0.23344	-9.7234E-05	3.2748	0.001364	3.0414	0.0012668	416.5265759408724	28.37	0.8975	28.218	27.885	28.782	-0.15195					38	21	2	0	0	0	0.024743	1	1672	1672		43.651	10.611	1	91411			77364	3465	53955	54045	85375	85375					-0.05942563053417871
SYLDNVRAL	9	Unmodified	_SYLDNVRAL_					0	0	0		CON__Q148H6;KRT28|p.V253*|1|0.08|ENSG00000173908|chr17:40797215-40797215|C/-|frameshift_variant;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7	CON__Q148H6;ENSG00000173908|ENST00000306658|KRT28	CON__Q148H6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2359008789062	2	525.782556	1049.55056	-0.8518	-0.00044786	-1.7698	-0.00093053	-2.6216	-0.0013784	525.7808186812664	25.88	0.46952	25.644	25.508	25.977	-0.23603					15	11	2	0	0	0	0.024511	1	1256	1256		40.778	5.1599	1	137830		+	77365	539;564	53956	54046	85376	85376					0.027765549549030766
SYLKSECGY	9	Unmodified	_SYLKSECGY_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2359619140625	2	525.23405	1048.45355	-0.808	-0.00042439	4.2787	0.0022473	3.4707	0.0018229	525.2361678939527	25.643	0.70432	25.416	25.148	25.852	-0.22683					45	16	4	0	0	0	0.35646	1	1241	1241		68.787	7.0955	1	1743500	+		77366	19918	53957	54047	85377	85377					-0.06874175316420406
SYLNALIR	8	Unmodified	_SYLNALIR_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|82|2|anti-sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.3528504963630603|0.2188578600898351|2.63|522.0|82|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2606506347656	2	475.276909	948.539266	-0.71794	-0.00034122	2.176	0.0010342	1.4581	0.00069298	475.27776152516805	28.009	0.68511	27.841	27.487	28.172	-0.16842					23	16	2	0	0	0	0.027866	1	1573	1573		19.36	6.4008	1	155600	+		77367	36207	53958	54048	85378	85378					0.06293777651433174
SYLRIHER	8	Unmodified	_SYLRIHER_					0	0	0		nc|ENSG00000197044|Q8N8Z8-2|ZNF441;ENSG00000197044|ENST00000357901|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	nc|ENSG00000197044|Q8N8Z8-2|ZNF441	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.3192138671875	2	537.296165	1072.57778	-0.26085	-0.00014015	-3.7802	-0.0020311	-4.0411	-0.0021713	537.2938542067922	20.195	0.48666	19.972	19.73	20.216	-0.22344					15	9	2	0	0	0	0.027866	1	487	487		30.504	0	1	43579			77368	9947	53959	54049	85379	85379					0.044390832859335205
SYLYTGDSH	9	Unmodified	_SYLYTGDSH_					0	0	0		ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7608642578125	2	521.727446	1041.44034	-0.61942	-0.00032317	-2.5589	-0.001335	-3.1783	-0.0016582	521.7260089513586	56.077	0.4932	56.077	55.858	56.351	0					19	13	2	0	0	0	0.024487	1	6201	6201		11.511	0	1	231650			77369	6171	53960	54050	85380	85380					-0.07872290104114654
SYMVERQADL	10	Unmodified	_SYMVERQADL_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.55340576171875	3	404.529017	1210.56522	-0.46047	-0.00018628	1.245	0.00050363	0.7845	0.00031735	404.52890866412713	29.342	0.21334	29.193	29	29.213	-0.14952					7	4	2	0	0	0	0.03519	1	1763	1763		20.03	0	1	50386	+		77370	25956	53961	54051	85381	85381					-0.03163740959257666
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	596.7669677734375	2	596.767103	1191.51965	-1.0421	-0.0006219	0.85838	0.00051225	-0.18373	-0.00010964	596.7675681929384	58.355	1.1619	58.355	58.02	59.182	0					99	31	5	0	0	0	0.0098514	4	6626	6593;6602;6614;6626		232.83	109.56	1	10382000			77371	1763	53962	54052	85382;85383;85384;85385	85385					-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	596.7675170898438	2	596.767103	1191.51965	-0.98112	-0.0005855	0.82812	0.00049419	-0.153	-9.1305E-05	596.7675680002458	58.516	1.3016	58.329	58.03	59.331	-0.18705					102	35	5	0	0	0	0.012006	4	6611	6590;6600;6611;6623		228.31	105.17	1	10538000			77372	1763	53962	54052	85386;85387;85388;85389	85388					-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	596.7667846679688	2	596.767103	1191.51965	-0.6422	-0.00038324	0.56948	0.00033985	-0.072713	-4.3393E-05	596.7673704643273	58.112	1.3747	58.203	57.872	59.246	0.091217					95	37	5	0	0	0	0.0088231	4	6507	6485;6495;6507;6522		258.83	127.79	1	10331000			77373	1763	53962	54052	85390;85391;85392;85393	85392					-0.06844643150020602
SYNFKPCEQV	10	Unmodified	_SYNFKPCEQV_					0	0	0			REV__ENSG00000144452|ENST00000272895|ABCA12	REV__ENSG00000144452|ENST00000272895|ABCA12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.7810668945312	2	607.779156	1213.54376	-0.31332	-0.00019043	1.4379	0.0008739	1.1245	0.00068347	608.281229141565	55.849	1.8551	55.633	54.688	56.543	-0.21607					124	50	5	0	0	0	1.0236	1	6073	6073		42.864	1.4377	1	2723300	+		77374	24336	53963	54053	85394	85394					-0.054471259880074285
SYNILSQDL	9	Unmodified	_SYNILSQDL_					0	0	0		ENSG00000174606|ENST00000366962|ANGEL2;nc|ENSG00000174606|Q5VTE6-2|ANGEL2;ENST00000460337.5_1_1:213180435-213186753:-|nuORF	ENSG00000174606|ENST00000366962|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.8132934570312	2	526.766571	1051.51859	0.35657	0.00018783	2.4381	0.0012843	2.7947	0.0014722	526.7682002681233	85.929	0.72581	85.791	85.411	86.136	-0.13734					36	16	3	0	0	0	0.024487	1	10384	10384		11.511	0	1	349410			77375	8484	53964	54054	85395	85395					-0.005108575189069597
SYNLALSYSV	10	Unmodified	_SYNLALSYSV_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.7387084960938	2	558.782222	1115.54989	-1.1709	-0.00065426	-0.32834	-0.00018347	-1.4992	-0.00083773	558.7818715875521	60.685	0.3444	60.764	60.574	60.918	0.078888					11	8	2	0	0	0	0.03519	1	6926	6926		74.255	0	1	95469			77376	1440	53965	54055	85396	85396					-0.0032628448479954386
SYNLEKITV	9	Unmodified	_SYNLEKITV_					0	0	0		nc|ENSG00000160856|Q96P31-5|FCRL3;ENST00000494724.5_1_1:157667081-157670285:-|nuORF;ENST00000478179.1_1_1:157666980-157667704:-|nuORF;nc|ENSG00000160856|Q96P31-4|FCRL3;ENST00000480682.5_1_1:157667440-157670285:-|nuORF;nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-2|FCRL3;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3	nc|ENSG00000160856|Q96P31-5|FCRL3;nc|ENSG00000160856|Q96P31-3|FCRL3	nc|ENSG00000160856|Q96P31-3|FCRL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7770385742188	2	533.792589	1065.57063	-0.42139	-0.00022494	0.44565	0.00023788	0.024253	1.2946E-05	533.7927012219262	46.875	0.97311	46.606	46.114	47.087	-0.26939					54	26	3	0	0	0	0.024257	1	4504	4504		58.23	8.2054	1	1631900			77377	18429;15536	53966	54056	85397	85397					0.04046305894826219
SYNLSINI	8	Unmodified	_SYNLSINI_					0	0	0			REV__ITGA8|p.E681Kfs*10|1|0.27|ENSG00000077943|chr10:15604285-15604285|C/-|frameshift_variant	REV__ITGA8|p.E681Kfs*10|1|0.27|ENSG00000077943|chr10:15604285-15604285|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.7953796386719	2	462.245275	922.475997	2.9894	0.0013818	0.63002	0.00029123	3.6194	0.0016731	462.2454053817072	18.542	0.35024	18.299	18.074	18.424	-0.24256					10	6	2	0	0	0	0.027866	1	273	273		31.955	0	1	84037	+		77378	20597	53967	54057	85398	85398					0.011657921435130447
SYPCHSAIP	9	Unmodified	_SYPCHSAIP_					0	0	0		nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000101901|ENST00000394780|ALG13	nc|ENSG00000101901|Q9NP73-3|ALG13	nc|ENSG00000101901|Q9NP73-3|ALG13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.21136474609375	2	487.723652	973.432752	0.6648	0.00032424	-0.05515	-2.6898E-05	0.60965	0.00029734	487.7236808779683	54.753	1.3736	54.547	54.237	55.611	-0.20613					49	37	2	0	0	0	0.024381	1	5850	5850		45.952	26.592	1	307960			77379	2359	53968	54058	85399	85399					-0.05502720905406022
SYPLFWKPL	9	Unmodified	_SYPLFWKPL_					0	0	0		ENST00000453914.1_1_20:34064387-34078805:-|nuORF	ENST00000453914.1_1_20:34064387-34078805:-|nuORF	ENST00000453914.1_1_20:34064387-34078805:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.2919311523438	2	575.81841	1149.62227	-1.2748	-0.00073408	-0.27172	-0.00015646	-1.5466	-0.00089054	575.8171234229332	82.257	0.20907	82.257	82.154	82.363	0					6	4	2	0	0	0	0.024457	1	10271	10271		29.15	0	1	31703			77380	14557	53969	54059	85400	85400					0.05344094379393027
SYPLNSVFV	9	Unmodified	_SYPLNSVFV_					0	0	0			REV__nc|ENSG00000075856|Q15020-4|SART3	REV__nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.7677001953125	2	513.26875	1024.52295	-0.51486	-0.00026426	-0.92088	-0.00047266	-1.4357	-0.00073692	513.268819809957	79.468	1.6715	79.468	79.035	80.707	0					86	39	4	0	0	0	0.4752	1	9836	9836		60.972	0	1	6158900	+		77381	20558	53970	54060	85401	85401					0.011666516946661432
SYPLNSVFV	9	Unmodified	_SYPLNSVFV_					0	0	0			REV__nc|ENSG00000075856|Q15020-4|SART3	REV__nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.2689208984375	2	513.26875	1024.52295	0.55057	0.00028259	-0.96537	-0.00049549	-0.4148	-0.0002129	513.2683446041391	79.629	2.1968	79.382	77.877	80.074	-0.2465					114	51	5	0	0	0	0.4752	1	9550	9550		60.972	4.2509	1	6442700	+		77382	20558	53970	54060	85402	85402					0.011666516946661432
SYQKLLFKF	9	Unmodified	_SYQKLLFKF_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;RB1CC1|p.M234Ifs*22|1|0.06|ENSG00000023287|chr8:52674145-52674145|C/-|frameshift_variant	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.7470092773438	2	587.336967	1172.65938	-1.6764	-0.00098459	-2.6626	-0.0015638	-4.339	-0.0025484	587.3350390494998	61.07	0.24377	60.894	60.753	60.997	-0.1761					8	5	2	0	0	0	0.024354	1	6815	6815		47.916	21.223	1	53098			77383	970	53971	54061	85403	85403					0.07995765925170417
SYRDSYDSY	9	Unmodified	_SYRDSYDSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.2327270507812	2	578.233093	1154.45163	-1.4191	-0.00082055	0.60446	0.00034952	-0.81461	-0.00047103	578.2333492322086	38.988	1.0538	38.988	38.68	39.733	0					73	29	4	0	0	0	0.013924	2	3323	3311;3323		167.23	79.474	1	3798700			77384	2077;18120	53972	54062	85404;85405	85405					-0.11941512800649434
SYRDSYDSY	9	Unmodified	_SYRDSYDSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.232666015625	2	578.233093	1154.45163	-0.79314	-0.00045862	-0.14359	-8.3026E-05	-0.93673	-0.00054165	578.2329031608863	38.817	1.1562	38.719	38.358	39.514	-0.098755					85	31	4	0	0	0	0.014475	2	3263	3263;3275		195.05	86.959	1	3398800			77385	2077;18120	53972	54062	85406;85407	85406					-0.11941512800649434
SYRDSYDSY	9	Unmodified	_SYRDSYDSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.23193359375	2	578.233093	1154.45163	-1.1678	-0.00067526	0.3087	0.0001785	-0.85909	-0.00049676	578.2332006868328	39.077	1.067	39.101	38.807	39.874	0.023727					80	29	4	0	0	0	0.013924	3	3266	3266;3277;3290		167.23	67.854	1	3118500			77386	2077;18120	53972	54062	85408;85409;85410	85408					-0.11941512800649434
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	585.24072265625	2	585.240918	1168.46728	-1.3603	-0.00079611	1.0457	0.00061198	-0.31462	-0.00018413	585.2414945267617	39.165	1.3441	39.165	38.868	40.212	0					109	37	5	0	0	0	0.013924	3	3356	3333;3344;3356		167.23	68.599	1	8828000			77387	5954	53973	54063	85411;85412;85413	85413					-0.11021226283605756
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	585.2409057617188	2	585.240918	1168.46728	-1.7382	-0.0010173	1.1373	0.00066557	-0.60099	-0.00035172	585.2415589254063	39.057	1.4797	38.958	38.629	40.108	-0.098755					114	40	5	0	0	0	0.016542	4	3315	3291;3302;3315;3327		154.12	77.344	1	7926700			77388	5954	53973	54063	85414;85415;85416;85417	85416					-0.11021226283605756
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	585.240966796875	2	585.240918	1168.46728	-0.29197	-0.00017087	0.1401	8.1994E-05	-0.15186	-8.8877E-05	585.2410177586635	39.295	1.4309	39.319	38.993	40.424	0.023727					109	39	5	0	0	0	0.016542	3	3317	3295;3305;3317		154.12	57.928	1	7727500			77389	5954	53973	54063	85418;85419;85420	85420					-0.11021226283605756
SYRGRLRPL	9	Unmodified	_SYRGRLRPL_					0	0	0			REV__nc|ENSG00000198794|Q8TAC9-3|SCAMP5	REV__nc|ENSG00000198794|Q8TAC9-3|SCAMP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.3202514648438	2	559.333082	1116.65161	-0.68833	-0.00038501	2.6055	0.0014574	1.9172	0.0010723	559.3342130322436	72.475	0.80409	72.277	71.949	72.753	-0.19811					29	18	2	0	0	0	0.024523	1	8527	8527		21.96	0	1	266790	+		77390	37070	53974	54064	85421	85421					0.09795051448259073
SYSASVIVSH	10	Unmodified	_SYSASVIVSH_					0	0	0			REV__ENSG00000279761|ENST00000623930|OR5D13	REV__ENSG00000279761|ENST00000623930|OR5D13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2360229492188	2	525.266739	1048.51892	-0.23216	-0.00012194	0.338	0.00017754	0.10585	5.5599E-05	525.2662912254037	25.249	1.0268	25.078	24.387	25.413	-0.17078					34	23	2	0	0	0	0.03519	1	1219	1219		27.882	12.24	1	72886	+		77391	29230	53975	54065	85422	85422					-0.0033943779901619564
SYSIPRCLV	9	Unmodified	_SYSIPRCLV_					0	0	0			REV__ENSG00000221864|ENST00000360770|KRTAP12-2	REV__ENSG00000221864|ENST00000360770|KRTAP12-2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.79296875	2	519.276052	1036.53755	-0.23094	-0.00011992	-2.1909	-0.0011377	-2.4218	-0.0012576	519.2749390814247	55.515	0.92618	55.359	54.852	55.778	-0.15602					56	23	4	0	0	0	0.024506	1	6119	6119		30.504	6.3009	1	350280	+		77392	28833	53976	54066	85423	85423					0.020744005711549107
SYSLRDAAPL	10	Unmodified	_SYSLRDAAPL_					0	0	0			REV__nc|ENSG00000120913|Q96JY6-4|PDLIM2	REV__nc|ENSG00000120913|Q96JY6-4|PDLIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7896118164062	2	546.787838	1091.56112	-0.5875	-0.00032124	2.6028	0.0014232	2.0152	0.0011019	546.7895759133834	31.025	0.91096	30.873	30.468	31.379	-0.15231					44	22	4	0	0	0	0.55353	1	1995	1995		82.241	0	1	2853400	+		77393	22569	53977	54067	85424	85424					0.01900537609321873
SYSSDYIYL	9	Unmodified	_SYSSDYIYL_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6;DCAF6|p.D281H|1|0.2|ENSG00000143164|chr1:167993378-167993378|G/C|missense_variant;ENST00000560524.1_1_15:29526351-29527221:-|nuORF	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.29150390625	2	555.75313	1109.49171	-1.2994	-0.00072213	-4.2548	-0.0023646	-5.5542	-0.0030867	555.7508124438373	65.531	0.20441	65.318	65.175	65.379	-0.21327					6	4	2	0	0	0	0.024487	1	7484	7484		40.573	0	1	49031			77394	5616	53978	54068	85425	85425					-0.0586596613011352
SYSSVLRKH	9	Unmodified	_SYSSVLRKH_					0	0	0		ENSG00000170631|ENST00000394909|ZNF16	ENSG00000170631|ENST00000394909|ZNF16	ENSG00000170631|ENST00000394909|ZNF16	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.296875	2	538.795998	1075.57744	3.0028	0.0016179	-2.5074	-0.001351	0.49538	0.00026691	539.2954303291176	17.182	0.37155	17.182	17.028	17.399	0					11	7	2	0	0	0	1.0101	1	147	147		18.324	0.95945	1	27298			77395	8062	53979	54069	85426	85426					0.04267663566088231
SYSVMKTF	8	Unmodified	_SYSVMKTF_					0	0	0			REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.596923828125	2	481.736228	961.457904	-0.32809	-0.00015805	-0.096089	-4.629E-05	-0.42418	-0.00020434	481.73611942073154	26.053	0.83574	25.885	25.584	26.42	-0.16816					37	23	2	0	0	0	0.027866	1	1290	1290		40.573	13.777	1	805480	+		77396	34797	53980	54070	85427	85427					-0.024366661028238923
SYSVMKTF	8	Unmodified	_SYSVMKTF_					0	0	0			REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.736228	961.457904	-0.53913	-0.00025972	8.9174	0.0042959	8.3783	0.0040361	481.74089158710086	25.865	0.34209	25.842	25.567	25.909	-0.023088	-0.067747	0.0082395	NaN	24.203	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25413	+		77397	34797	53980	54070							-0.024366661028238923
SYSVMKTF	8	Unmodified	_SYSVMKTF_					0	0	0			REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.736228	961.457904	0.064223	3.0939E-05	6.5803	0.00317	6.6445	0.0032009	481.7395039231291	25.822	0.17393	25.902	25.792	25.966	0.08009	-0.0075163	0.0059877	NaN	24.203	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10450	+		77398	34797	53980	54070							-0.024366661028238923
SYSVMKTF	8	Unmodified	_SYSVMKTF_					0	0	0			REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	REV__ENST00000542824.5_1_18:33724964-33725934:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.736228	961.457904	-0.81601	-0.0003931	0.39236	0.00018901	-0.42366	-0.00020409	481.7362799198531	26.067	0.87527	25.904	25.544	26.419	-0.16331	-0.0053383	2.5833E-05	NaN	24.203	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733140	+		77399	34797	53980	54070							-0.024366661028238923
SYTIWEEP	8	Unmodified	_SYTIWEEP_					0	0	0			REV__ENSG00000205810|ENST00000396439|KLRC3;REV__ENSG00000183542|ENST00000309384|KLRC4;REV__ENSG00000134545|ENST00000359151|KLRC1	REV__ENSG00000205810|ENST00000396439|KLRC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7328491210938	2	512.73474	1023.45493	0.31677	0.00016242	-3.0574	-0.0015677	-2.7407	-0.0014052	512.7332377598119	59.166	1.0475	58.985	58.426	59.473	-0.18134					63	25	4	0	0	0	0.81662	1	6558	6558		57.811	3.035	1	2743600	+		77400	28691;27580;23461	53981	54071	85428	85428					-0.05586217955999473
SYTKIQTSW	9	Unmodified	_SYTKIQTSW_					0	0	0			REV__ENSG00000105649|ENST00000222256|RAB3A	REV__ENSG00000105649|ENST00000222256|RAB3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2100830078125	2	557.282389	1112.55022	-0.68462	-0.00038153	-0.33291	-0.00018553	-1.0175	-0.00056706	557.2816886252884	34.633	0.48226	34.458	34.21	34.692	-0.17557					23	11	3	0	0	0	0.024457	1	2584	2584		29.15	0	1	182320	+		77401	21548	53982	54072	85429	85429					-0.0015486476497699186
SYTKIQTSW	9	Unmodified	_SYTKIQTSW_					0	0	0			REV__ENSG00000105649|ENST00000222256|RAB3A	REV__ENSG00000105649|ENST00000222256|RAB3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.282389	1112.55022	-0.1145	-6.3808E-05	-0.57497	-0.00032042	-0.68947	-0.00038423	557.2817701022203	34.738	0.48567	34.521	34.266	34.751	-0.21693	0.074246	-0.00059371	NaN	21.96	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178440	+		77402	21548	53982	54072							-0.0015486476497699186
SYTKIQTSW	9	Unmodified	_SYTKIQTSW_					0	0	0			REV__ENSG00000105649|ENST00000222256|RAB3A	REV__ENSG00000105649|ENST00000222256|RAB3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.282389	1112.55022	-0.2754	-0.00015348	0.53337	0.00029724	0.25796	0.00014376	557.2820919976951	34.569	0.44648	34.362	34.201	34.648	-0.20696	-0.085114	0.00064161	NaN	21.96	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138290	+		77403	21548	53982	54072							-0.0015486476497699186
SYVGAKPYGV	10	Unmodified	_SYVGAKPYGV_					0	0	0			REV__sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	REV__sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.8104248046875	2	520.7742	1039.53385	-0.12336	-6.4241E-05	2.1282	0.0011083	2.0049	0.0010441	521.274722085488	92.578	0.21059	92.585	92.461	92.672	0.0077286					7	4	2	0	0	0	0.03519	1	11666	11666		34.173	0	1	24620	+		77404	37551	53983	54073	85430	85430					0.01566054068939593
SYVIESDEDL	10	Unmodified	_SYVIESDEDL_					0	0	0		ENSG00000165392|ENST00000298139|WRN;WRN|p.L690*|1|0.52|ENSG00000165392|chr8:31100933-31100933|C/-|frameshift_variant	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.8182373046875	2	585.264059	1168.51356	0.076398	4.4713E-05	-2.307	-0.0013502	-2.2306	-0.0013055	585.2624578965982	19.358	0.79082	19.197	18.885	19.676	-0.1608					29	15	3	0	0	0	0.03519	1	383	383		21.96	0	1	44061			77405	7409	53984	54074	85431	85431					-0.0639520617216931
SYVRLPLEL	9	Unmodified	_SYVRLPLEL_					0	0	0			REV__ENST00000297875.6_1_X:37985921-37986104:+|nuORF	REV__ENST00000297875.6_1_X:37985921-37986104:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.2750854492188	2	545.318774	1088.623	-0.64118	-0.00034965	-3.257	-0.0017761	-3.8982	-0.0021258	545.317004523517	76.412	0.48905	76.412	76.189	76.678	0					15	11	2	0	0	0	0.024319	1	9445	9445		47.657	5.2612	1	441180	+		77406	30017	53985	54075	85432	85432					0.08222889028479585
SYVTDPTGEP	10	Unmodified	_SYVTDPTGEP_					0	0	0			REV__ENSG00000142677|ENST00000270800|IL22RA1	REV__ENSG00000142677|ENST00000270800|IL22RA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.3005981445312	2	533.240386	1064.46622	-0.61048	-0.00032553	-0.16717	-8.9144E-05	-0.77765	-0.00041468	533.2406839665064	61.06	0.22351	61.06	60.921	61.144	0					7	5	2	0	0	0	0.03519	1	7051	7051		51.335	29.376	1	127370	+		77407	24177	53986	54076	85433	85433					-0.06343440652517529
SYYHSQFRQ	9	Unmodified	_SYYHSQFRQ_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.23883056640625	3	405.856233	1214.54687	0.78022	0.00031666	-3.8019	-0.001543	-3.0217	-0.0012264	405.8545513181925	27.167	0.49446	27.167	26.867	27.361	0					28	12	3	0	0	0	0.024428	1	1463	1463		47.96	22.068	1	308940			77408	1818	53987	54077	85434	85434					-0.051821148189674204
SYYYCRYRG	9	Unmodified	_SYYYCRYRG_					0	0	0			REV__nc|ENSG00000187116|A6NI73-4|LILRA5	REV__nc|ENSG00000187116|A6NI73-4|LILRA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	615.8265380859375	2	615.771665	1229.52878	-0.2425	-0.00014933	1.7902	0.0011023	1.5477	0.00095302	616.2721568621298	51.08	0.14366	50.931	50.826	50.97	-0.14916					5	3	2	0	0	0	0.024456	1	5363	5363		20.947	0	1	46224	+		77409	27916	53988	54078	85435	85435					-0.07680573065340468
TAAAILRTN	9	Unmodified	_TAAAILRTN_					0	0	0			REV__nc|ENSG00000112237|P24863-2|CCNC	REV__nc|ENSG00000112237|P24863-2|CCNC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2801513671875	2	465.771991	929.529429	1.8672	0.00086968	-2.6502	-0.0012344	-0.78305	-0.00036472	465.77028579841925	24.273	0.61465	24.092	23.759	24.374	-0.18089					17	13	2	0	0	0	0.023842	1	1054	1054		49.536	0	1	39868	+		77410	21982	53989	54079	85436	85436					0.061845896460340555
TAAAKKRQYAE	11	Unmodified	_TAAAKKRQYAE_					0	0	0			REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	REV__nc|ENSG00000133195|Q8N1S5|SLC39A11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.8951110839844	3	412.894688	1235.66223	0.054664	2.257E-05	-0.37134	-0.00015333	-0.31668	-0.00013076	412.8945294662656	30.429	0.9638	30.279	29.967	30.931	-0.14952					70	22	4	0	0	0	0.98069	1	1925	1925		41.109	1.2358	1	2331000	+		77411	23361	53990	54080	85437	85437					0.05382989312056452
TAAAVCVWL	9	Unmodified	_TAAAVCVWL_					0	0	0			REV__ENSG00000225968|ENST00000424383|ELFN1	REV__ENSG00000225968|ENST00000424383|ELFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.27178955078125	2	467.246763	932.478974	0.19158	8.9516E-05	-3.2046	-0.0014974	-3.013	-0.0014078	467.2453749265871	36.377	0.75486	36.16	36.015	36.769	-0.21661					27	18	2	0	0	0	0.024466	1	2832	2832		25.45	2.4077	1	109180	+		77412	28869	53991	54081	85438	85438					0.010033439966832702
TAADVVKQW	9	Unmodified	_TAADVVKQW_					0	0	0		ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2716979980469	2	509.271824	1016.5291	-0.031802	-1.6196E-05	-0.010694	-5.4461E-06	-0.042496	-2.1642E-05	509.2717426440048	50.471	1.1998	50.191	49.839	51.038	-0.27977					62	31	3	0	0	0	0.01388	4	5121	5099;5109;5121;5134		180.87	82.068	1	9703700			77413	937	53992	54082	85439;85440;85441;85442	85441					0.021491699261900976
TAAEACRPR	9	Unmodified	_TAAEACRPR_					0	0	0		ENST00000515158.5_1_5:179050143-179050595:-|nuORF	ENST00000515158.5_1_5:179050143-179050595:-|nuORF	ENST00000515158.5_1_5:179050143-179050595:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7955627441406	2	487.74545	973.476348	0.11057	5.3929E-05	-3.8097	-0.0018582	-3.6992	-0.0018042	487.7433104086741	30.81	0.62678	30.657	30.341	30.968	-0.15231					28	14	3	0	0	0	0.02435	1	1997	1997		26.693	0	1	197720			77414	15896	53993	54083	85443	85443					-0.011451114082774438
TAAFDTQPPF	10	Unmodified	_TAAFDTQPPF_					0	0	0			REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	REV__ENST00000264010.8_1_16:67605120-67644919:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.310302734375	2	547.761289	1093.50803	-0.22485	-0.00012316	-0.026231	-1.4368E-05	-0.25108	-0.00013753	547.7605454301856	63.458	0.57043	63.23	63.015	63.585	-0.22773					18	14	2	0	0	0	0.03519	1	7191	7191		45.972	0	1	137140	+		77415	29707	53994	54084	85444	85444					-0.03498840173347162
TAAFKHGRTET	11	Unmodified	_TAAFKHGRTET_					0	0	0		ENSG00000157184|ENST00000371486|CPT2	ENSG00000157184|ENST00000371486|CPT2	ENSG00000157184|ENST00000371486|CPT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	407.2445068359375	3	406.879038	1217.61528	-0.33754	-0.00013734	-0.096118	-3.9108E-05	-0.43366	-0.00017645	406.878625262527	35.679	0.41389	35.485	35.133	35.546	-0.19419					14	10	2	0	0	0	0.024759	1	2689	2689		12.957	0	1	167480			77416	6582	53995	54085	85445	85445					0.01518129760870579
TAAFLPAQT	9	Unmodified	_TAAFLPAQT_					0	0	0		ENST00000573070.5_1_17:7297840-7298119:-|nuORF	ENST00000573070.5_1_17:7297840-7298119:-|nuORF	ENST00000573070.5_1_17:7297840-7298119:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2221374511719	2	460.247818	918.481082	0.4444	0.00020453	2.6678	0.0012278	3.1122	0.0014324	460.24886669819153	42.444	0.7327	42.444	42.053	42.786	0					31	20	2	0	0	0	0.024381	1	3874	3874		10.265	0	1	764020			77417	17067	53996	54086	85446	85446					0.01858096006139931
TAAFQALGLL	10	Unmodified	_TAAFQALGLL_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.30804443359375	2	502.792392	1003.57023	-1.5074	-0.00075791	1.2368	0.00062185	-0.27061	-0.00013606	502.7928116169623	65.04	0.68129	64.777	64.455	65.136	-0.2626					37	17	3	0	0	0	0.03519	1	7700	7700		23.523	0	1	2356100			77418	10202	53997	54087	85447	85447					0.06858930965665877
TAAGDPLPAAS	11	Unmodified	_TAAGDPLPAAS_					0	0	0			REV__ENSG00000043591|ENST00000369295|ADRB1	REV__ENSG00000043591|ENST00000369295|ADRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.75665283203125	2	485.745639	969.476725	-0.50852	-0.00024701	-0.089791	-4.3616E-05	-0.59831	-0.00029063	485.74572414956305	45.757	0.38152	45.555	45.325	45.706	-0.20226					15	10	2	0	0	0	0.024756	1	4354	4354		29.17	0	1	252770	+		77419	20108	53998	54088	85448	85448					-0.00923413207442536
TAAGKVPPA	9	Unmodified	_TAAGKVPPA_					0	0	0		ENSG00000112992|ENST00000344920|NNT;NNT|p.A289Cfs*10|1|0.43|ENSG00000112992|chr5:43628286-43628287|-/T|frameshift_variant	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.2250671386719	2	406.237253	810.459953	1.0316	0.00041907	-0.6194	-0.00025162	0.4122	0.00016745	406.2376307865583	26.612	0.21321	26.693	26.586	26.799	0.081293					7	4	2	0	0	0	0.024405	1	1314	1314		14.865	1.9057	1	19342			77420	3255	53999	54089	85449	85449					0.04714130697266228
TAAGLRLRA	9	Unmodified	_TAAGLRLRA_					0	0	0		ENST00000430398.2_1_1:73570714-73571443:+|nuORF	ENST00000430398.2_1_1:73570714-73571443:+|nuORF	ENST00000430398.2_1_1:73570714-73571443:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.7745666503906	2	464.787976	927.561398	-0.31675	-0.00014722	2.8205	0.0013109	2.5038	0.0011637	464.7891083975164	51.373	0.38308	51.096	50.891	51.274	-0.27643					13	9	2	0	0	0	0.024209	1	5261	5261		31.53	4.8369	1	185920			77421	14168	54000	54090	85450	85450					0.09472002119832723
TAAHQQPREAP	11	Unmodified	_TAAHQQPREAP_					0	0	0			REV__ENST00000432548.2_1_20:56190212-56195528:-|nuORF	REV__ENST00000432548.2_1_20:56190212-56195528:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	403.23760986328125	3	402.538904	1204.59488	-0.016013	-6.4459E-06	0.39235	0.00015793	0.37633	0.00015149	402.5388811877936	29.998	0.40235	29.998	29.814	30.216	0					14	9	2	0	0	0	0.02478	1	1872	1872		38.714	0	1	115760	+		77422	22755	54001	54091	85451	85451					0.0007695910110214754
TAAIIQLT	8	Unmodified	_TAAIIQLT_					0	0	0		TDRD10|p.A143T|1|0.09|ENSG00000163239|chr1:154542745-154542745|G/A|missense_variant	TDRD10|p.A143T|1|0.09|ENSG00000163239|chr1:154542745-154542745|G/A|missense_variant	TDRD10|p.A143T|1|0.09|ENSG00000163239|chr1:154542745-154542745|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.2069396972656	2	415.752736	829.490919	-0.18144	-7.5435E-05	1.2222	0.00050814	1.0408	0.00043271	415.75296737892467	36.632	0.36446	36.426	36.282	36.647	-0.20518					12	8	2	0	0	0	0.027866	1	2906	2906		12.207	0	1	75425			77423	38060	54002	54092	85452	85452					0.06935284011501608
TAAKKTLL	8	Unmodified	_TAAKKTLL_					0	0	0		nc|ENSG00000161973|Q96M95-2|CCDC42;ENSG00000161973|ENST00000293845|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2753601074219	2	423.276378	844.538203	0.13071	5.5328E-05	-3.0954	-0.0013102	-2.9647	-0.0012549	423.274939460662	110.55	0.42538	110.42	110.14	110.57	-0.12524					34	13	3	0	0	0	1.0574	1	13566	13566		9.4706	0.64823	1	122380			77424	6906	54003	54093	85453	85453					0.10971563282521402
TAALAVVTTS	10	Unmodified	_TAALAVVTTS_					0	0	0		ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENSG00000114446|ENST00000264538|IFT57	ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENST00000465024.1_1_3:107932768-107941190:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2721252441406	2	467.266207	932.517862	1.37	0.00064018	0.53583	0.00025038	1.9059	0.00089055	467.2666876961229	36.385	0.43946	36.187	36.016	36.456	-0.19829					16	10	2	0	0	0	0.03519	1	2821	2821		49.442	28.495	1	197020			77425	3364	54004	54094	85454	85454					0.04890347832053976
TAALKVNNS	9	Unmodified	_TAALKVNNS_					0	0	0			REV__nc|ENSG00000108424|Q14974-2|KPNB1	REV__nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.22821044921875	2	459.256174	916.497795	-0.81692	-0.00037518	0.91855	0.00042185	0.10163	4.6673E-05	459.2564079387667	25.255	0.39551	25.22	25.037	25.432	-0.034395					13	9	2	0	0	0	0.024457	1	1193	1193		29.15	7.4472	1	61293	+		77426	21734	54005	54095	85455	85455					0.03620596892085359
TAALRSPTL	9	Unmodified	_TAALRSPTL_					0	0	0		nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4;ENST00000485732.5_1_9:139747929-139748217:+|nuORF	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	nc|ENSG00000177943|Q6UXC1-3|MAMDC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2369689941406	2	465.274367	928.53418	-0.39786	-0.00018512	0.75162	0.00034971	0.35376	0.00016459	465.2743802795749	28.735	0.66903	28.731	28.416	29.085	-0.0042019					52	15	5	0	0	0	0.024427	1	1725	1725		9.1829	0	1	261280			77427	8777	54006	54096	85456	85456					0.06705473788792915
TAALVLATVL	10	Unmodified	_TAALVLATVL_					0	0	0		nc|ENSG00000171462|Q6UY11-2|DLK2;ENSG00000171462|ENST00000372488|DLK2;chr6:43454880-43455987|489|18.39|0.97|4.25|-|ENST00000357338|DLK2,DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3092041015625	2	486.310418	970.606283	-0.34119	-0.00016592	-2.842	-0.0013821	-3.1832	-0.001548	486.3090092491961	20.812	0.69344	20.588	20.365	21.058	-0.22344					37	13	4	0	0	0	1.0665	1	589	589		37.159	3.6435	1	1831400			77428	412	54007	54097	85457	85457					0.11980388142512766
TAALVRIL	8	Unmodified	_TAALVRIL_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.1899719238281	2	428.78437	855.554188	1.657	0.00071048	-1.668	-0.00071523	-0.011069	-4.7464E-06	428.78348517513604	24.98	0.34978	24.809	24.643	24.993	-0.17151					12	7	2	0	0	0	0.027866	1	1128	1128		24.203	6.8378	1	82033	+		77429	20167	54008	54098	85458	85458					0.12063269519410369
TAANNVQGI	9	Unmodified	_TAANNVQGI_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.7408142089844	2	444.232699	886.450845	-0.31537	-0.0001401	-3.3824	-0.0015026	-3.6978	-0.0016427	444.2335618805336	22.722	0.64454	22.722	22.479	23.123	0					19	13	3	0	0	0	0.024457	1	810	810		21.96	0	1	16486	+		77430	20254	54009	54099	85459	85459					0.003077373409610118
TAANVVNALD	10	Unmodified	_TAANVVNALD_					0	0	0		ENST00000415522.1_1_X:22454332-22454536:+|nuORF	ENST00000415522.1_1_X:22454332-22454536:+|nuORF	ENST00000415522.1_1_X:22454332-22454536:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2635498046875	2	494.258914	986.503274	0.79867	0.00039475	4.4242	0.0021867	5.2229	0.0025815	494.26145577712686	71.396	0.65134	71.396	71.105	71.756	0					25	16	2	0	0	0	0.03519	1	8625	8625		36.447	0	1	458350			77431	13877	54010	54100	85460	85460					0.009482756838906425
TAAPALWTQ	9	Unmodified	_TAAPALWTQ_					0	0	0			REV__ENST00000301618.8_1_17:74946102-74946387:+|nuORF	REV__ENST00000301618.8_1_17:74946102-74946387:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7919616699219	2	479.753267	957.491981	-0.24248	-0.00011633	1.1878	0.00056987	0.94536	0.00045354	479.75372595956435	45.775	0.70969	45.514	45.181	45.891	-0.26118					33	19	2	0	0	0	0.024292	1	4379	4379		25.574	0	1	572490	+		77432	30060	54011	54101	85461	85461					0.011534983804040166
TAAPPAQPL	9	Unmodified	_TAAPPAQPL_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2428283691406	2	433.242535	864.470518	0.22268	9.6476E-05	-0.15599	-6.758E-05	0.066697	2.8896E-05	433.24227992038817	46.987	1.0314	46.834	46.445	47.476	-0.15301					56	27	3	0	0	0	0.39228	1	4672	4672		66.429	7.6473	1	1305500			77433	10317	54012	54102	85462	85462					0.03286113351691711
TAAPPAQPL	9	Unmodified	_TAAPPAQPL_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.24285888671875	2	433.242535	864.470518	0.060533	2.6225E-05	0.16613	7.1974E-05	0.22666	9.8199E-05	433.24243767833775	46.752	0.7655	46.803	46.474	47.24	0.051395					48	20	3	0	0	0	0.39228	1	4597	4597		66.429	4.3219	1	1274500			77434	10317	54012	54102	85463	85463					0.03286113351691711
TAAPSAAALPA	11	Unmodified	_TAAPSAAALPA_					0	0	0			REV__ENST00000557373.1_1_14:35343971-35344544:+|nuORF	REV__ENST00000557373.1_1_14:35343971-35344544:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7483215332031	2	470.758549	939.502546	-0.16454	-7.746E-05	0.51263	0.00024133	0.34809	0.00016387	470.7586472528177	45.553	0.88069	45.401	45.145	46.026	-0.15156					45	25	3	0	0	0	0.024759	1	4381	4381		26.693	13.734	1	938910	+		77435	35066	54013	54103	85464	85464					0.030374810348348547
TAAPTKTTP	9	Unmodified	_TAAPTKTTP_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.25537109375	2	444.245275	886.475997	0.1658	7.3655E-05	-0.97289	-0.0004322	-0.80709	-0.00035855	444.24550454677257	54.101	0.62958	53.954	53.602	54.232	-0.14723					37	17	3	0	0	0	0.021513	1	5806	5806		71.877	0	1	296200	+		77436	22292	54014	54104	85465	85465					0.028217921435157223
TAAPTKTTP	9	Unmodified	_TAAPTKTTP_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.255859375	2	444.245275	886.475997	0.037737	1.6765E-05	-1.4357	-0.00063782	-1.398	-0.00062106	444.2455010764398	53.769	0.48371	53.865	53.664	54.148	0.095669					32	13	3	0	0	0	0.023454	1	5755	5755		71.877	27.5	1	300890	+		77437	22292	54014	54104	85466	85466					0.028217921435157223
TAAPVTTTVT	10	Unmodified	_TAAPVTTTVT_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;SREBF1|p.Q588Sfs*111|1|0.29|ENSG00000072310|chr17:17816982-17816983|-/TT|frameshift_variant;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2753601074219	2	481.263665	960.512776	-0.095077	-4.5757E-05	0.71431	0.00034377	0.61923	0.00029801	481.2637847387544	43.637	0.72645	43.667	43.34	44.066	0.030823					63	19	4	0	0	0	0.03519	1	4097	4097		14.865	0	1	1848800			77438	1476	54015	54105	85467	85467					0.030940439694290944
TAAQAKNLI	9	Unmodified	_TAAQAKNLI_					0	0	0		ENST00000469328.5_1_7:128033063-128040541:-|nuORF;ENST00000484496.5_1_7:128032984-128040541:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-7|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1;ENSG00000178035|ENST00000326739|IMPDH2	ENST00000469328.5_1_7:128033063-128040541:-|nuORF	ENST00000469328.5_1_7:128033063-128040541:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790222167969	2	465.274367	928.53418	-0.24147	-0.00011235	1.3277	0.00061773	1.0862	0.00050538	465.2750665031455	51.795	0.56757	51.882	51.749	52.316	0.087006					26	14	2	0	0	0	0.024427	1	5435	5435		19.997	0	1	4793000			77439	2782	54016	54106	85468	85468					0.06705473788792915
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	401.55950927734375	3	401.559528	1201.65676	0.1274	5.1157E-05	-0.26706	-0.00010724	-0.13967	-5.6085E-05	401.559375812841	35.697	1.5375	35.483	35.139	36.676	-0.21416					93	40	4	0	0	0	0.60734	4	2728	2708;2717;2728;2740		76.17	38.662	1	10415000			77440	10724	54017	54107	85469;85470;85471;85472	85471					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.835205078125	2	601.835654	1201.65676	-0.88197	-0.0005308	0.65233	0.00039259	-0.22964	-0.00013821	601.8359895329578	35.714	0.56548	35.504	35.182	35.747	-0.20969					43	14	4	0	0	0	0.086205	2	2724	2724;2736		128.6	51.924	1	2429900			77441	10724	54017	54107	85473;85474	85473					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.55963134765625	3	401.559528	1201.65676	0.78347	0.00031461	-0.78366	-0.00031469	-0.00018789	-7.5449E-08	401.55914275064896	35.661	1.7691	35.449	34.766	36.535	-0.21246					88	46	4	0	0	0	0.70466	4	2722	2699;2709;2722;2734		66.962	18.373	1	10682000			77442	10724	54017	54107	85475;85476;85477;85478	85477					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.8353271484375	2	601.835654	1201.65676	-0.73001	-0.00043935	0.56857	0.00034219	-0.16144	-9.7161E-05	601.8359117635906	35.669	0.70557	35.457	35.077	35.783	-0.21246					47	18	4	0	0	0	0.14055	2	2713	2713;2723		117.53	48.68	1	2442700			77443	10724	54017	54107	85479;85480	85479					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	601.8358154296875	2	601.835654	1201.65676	-0.53279	-0.00032065	0.37715	0.00022698	-0.15564	-9.3672E-05	601.8358200262672	35.52	0.75393	35.333	35.1	35.854	-0.18675					45	20	4	0	0	0	0.18373	3	2692	2682;2692;2707		123.21	48.165	1	2461800			77444	10724	54017	54107	85481;85482;85483	85482					0.06399310520237123
TAAQITQRKW	10	Unmodified	_TAAQITQRKW_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;HLA-B|p.A159_D161del|1|0.06|ENSG00000234745|chr6:31356303-31356311|GTCCGCGGC/-|inframe_deletion;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.55938720703125	3	401.559528	1201.65676	-0.69266	-0.00027814	0.61433	0.00024669	-0.078324	-3.1452E-05	401.559759658279	35.545	1.4441	35.358	35.023	36.467	-0.18675					96	38	4	0	0	0	0.59525	3	2711	2685;2698;2711		77.533	20.901	1	10944000			77445	10724	54017	54107	85484;85485;85486	85486					0.06399310520237123
TAASEGRMVI	10	Unmodified	_TAASEGRMVI_					0	0	0		nc|ENSG00000137090|Q9Y5R6-2|DMRT1;ENST00000564322.1_1_9:841703-894198:+|nuORF;ENSG00000137090|ENST00000382276|DMRT1	nc|ENSG00000137090|Q9Y5R6-2|DMRT1	nc|ENSG00000137090|Q9Y5R6-2|DMRT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8139038085938	2	517.768591	1033.52263	-2.2635	-0.001172	3.2115	0.0016628	0.94799	0.00049084	517.7701461562046	60.271	1.2012	60.35	59.974	61.175	0.078888					42	31	2	0	0	0	0.03519	1	6838	6838		25.574	2.0514	1	3161200			77446	5088	54018	54108	85487	85487					0.007209087031696981
TAASIYEEL	9	Unmodified	_TAASIYEEL_					0	0	0		ENST00000415495.5_1_19:42311603-42315272:+|nuORF;ENSG00000170956|ENST00000357396|CEACAM3	ENST00000415495.5_1_19:42311603-42315272:+|nuORF	ENST00000415495.5_1_19:42311603-42315272:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.32366943359375	2	498.747847	995.481142	0.39415	0.00019658	3.1394	0.0015658	3.5336	0.0017624	498.7471087106155	76.006	0.18945	76.017	75.901	76.09	0.011642					6	4	2	0	0	0	0.024323	1	9277	9277		44.117	14.967	1	43319			77447	8099	54019	54109	85488	85488					-0.016779487845269614
TAASVGHAP	9	Unmodified	_TAASVGHAP_					0	0	0		ENST00000486064.5_1_1:44457112-44459637:+|nuORF	ENST00000486064.5_1_1:44457112-44459637:+|nuORF	ENST00000486064.5_1_1:44457112-44459637:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	405.7452392578125	2	405.70886	809.403166	-0.041264	-1.6741E-05	-4.0353	-0.0016371	-4.0765	-0.0016539	405.7060629171037	45.681	0.16587	45.53	45.379	45.544	-0.15156					5	4	2	0	0	0	0.024436	1	4417	4417		23.042	1.0826	1	79891			77448	15337	54020	54110	85489	85489					-0.00915916859241861
TAASVTAPTA	10	Unmodified	_TAASVTAPTA_					0	0	0			REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	REV__ENST00000324196.9_1_3:152163180-152175927:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.2453918457031	2	445.234907	888.455261	0.156	6.9455E-05	-2.488	-0.0011077	-2.332	-0.0010383	445.23370478863023	102.78	1.0672	102.78	102.5	103.57	0.0054245					59	25	3	0	0	0	0.03519	1	13156	13156		34.173	13.226	1	2628200	+		77449	30373	54021	54111	85490	85490					0.006572017638632133
TAATSLPNL	9	Unmodified	_TAATSLPNL_					0	0	0		ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	ENST00000357503.2_1_9:140174524-140174761:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2552490234375	2	444.245275	886.475997	0.038597	1.7146E-05	0.24534	0.00010899	0.28394	0.00012614	444.24539014283135	53.883	0.80112	53.883	53.691	54.492	0					30	22	2	0	0	0	0.017396	1	5842	5842		69.628	0	1	291010			77450	12696	54022	54112	85491	85491					0.028217921435157223
TAATSPALKR	10	Unmodified	_TAATSPALKR_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.28057861328125	2	508.298373	1014.58219	-0.63323	-0.00032187	-0.53307	-0.00027096	-1.1663	-0.00059283	508.29758462609925	47.965	0.47478	47.965	47.529	48.003	0					25	14	2	0	0	0	0.03519	1	4839	4839		32.812	16.339	1	431780			77451	7594	54023	54113	85492	85492					0.07548547708836395
TAAVVSRQ	8	Unmodified	_TAAVVSRQ_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;RAB11FIP1|p.K1180Ifs*4|1|0.12|ENSG00000156675|chr8:37870514-37870515|-/AA|frameshift_variant;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.71185302734375	2	416.237784	830.461016	-0.30886	-0.00012856	0.86475	0.00035994	0.55589	0.00023138	416.2380011148743	25.822	0.47207	25.799	25.526	25.998	-0.023088					22	10	3	0	0	0	0.027866	1	1234	1234		45.952	24.25	1	320700			77452	6542	54024	54114	85493	85493					0.03900345066188038
TAAWVLML	8	Unmodified	_TAAWVLML_					0	0	0		ENST00000563314.5_1_16:28847983-28848118:+|nuORF	ENST00000563314.5_1_16:28847983-28848118:+|nuORF	ENST00000563314.5_1_16:28847983-28848118:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2287292480469	2	452.751682	903.48881	0.13031	5.9E-05	-3.4162	-0.0015467	-3.2859	-0.0014877	452.74983250438714	102.61	0.48392	102.62	102.37	102.85	0.0073471					20	11	3	0	0	0	0.027866	1	13122	13122		35.201	0	1	188730			77453	16863	54025	54115	85494	85494					0.03320532002044274
TACLIRMV	8	Carbamidomethyl (C),Oxidation (M)	_TAC(Carbamidomethyl (C))LIRM(Oxidation (M))V_	TAC(1)LIRMV	TACLIRM(1)V	TAC(48)LIRMV	TACLIRM(48)V	0	1	1		ENST00000478204.5_1_1:33557816-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-4|AZIN2	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.25775146484375	2	490.256805	978.499057	-0.68729	-0.00033695	2.9642	0.0014532	2.277	0.0011163	490.2582072856167	105.41	1.6673	105.28	104.43	106.1	-0.13099					132	57	3	0	0	0	0.93274	1	13105	13105		47.916	10.756	1	5001000			77454	15135	54026	54116	85495	85495	199	515			0.008947716649913673
TADEIVKLMLD	11	Unmodified	_TADEIVKLMLD_					0	0	0		ENSG00000149476|ENST00000394900|TKFC;nc|ENSG00000149476|Q3LXA3-2|TKFC;ENST00000524953.1_1_11:61110045-61110363:+|nuORF	ENSG00000149476|ENST00000394900|TKFC	ENSG00000149476|ENST00000394900|TKFC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.5580139160156	3	416.556573	1246.64789	0.35454	0.00014769	3.7608	0.0015666	4.1153	0.0017143	416.55804390745305	24.385	1.0842	24.463	24.048	25.132	0.078344					61	23	4	0	0	0	1.0563	1	1010	1010		23.378	1.5975	1	474550			77455	6091	54027	54117	85496	85496					0.034431560488883406
TADGVPVNSR	10	Unmodified	_TADGVPVNSR_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.2798156738281	2	508.261988	1014.50942	-0.68102	-0.00034614	0.59006	0.00029991	-0.090954	-4.6229E-05	508.26148124790166	48.088	0.37064	48.088	47.906	48.277	0					16	10	2	0	0	0	0.03519	1	4874	4874		24.519	0	1	687790			77456	6804	54028	54118	85497	85497					0.0027479391542328813
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2772216796875	2	530.277106	1058.53966	-0.40857	-0.00021665	-0.050599	-2.6831E-05	-0.45917	-0.00024349	530.2771636805379	58.789	1.1291	58.601	58.136	59.265	-0.18795					85	27	4	0	0	0	0.16468	3	6479	6446;6467;6479		96.19	19.344	1	15538000			77457	9269	54029	54119	85498;85499;85500	85500					0.01273152580643
TADHNLLLY	9	Unmodified	_TADHNLLLY_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2777709960938	2	530.277106	1058.53966	-0.25058	-0.00013288	-0.24157	-0.0001281	-0.49215	-0.00026097	530.2770694237099	58.744	1.1698	58.562	58.065	59.235	-0.18134					82	28	5	0	0	0	0.39228	1	6446	6446		66.429	0.6261	1	14915000			77458	9269	54029	54119	85501	85501					0.01273152580643
TADYLSPLI	9	Unmodified	_TADYLSPLI_					0	0	0		ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF;ENSG00000140983|ENST00000315082|RHOT2	ENST00000568636.5_1_16:720997-722003:+|nuORF	ENST00000568636.5_1_16:720997-722003:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.76873779296875	2	496.768583	991.522613	0.23148	0.00011499	-0.24066	-0.00011955	-0.0091865	-4.5636E-06	496.76823583333896	81.465	1.1782	81.272	80.966	82.144	-0.19334					58	27	4	0	0	0	0.22754	1	9817	9817		85.359	0	1	1114400			77459	5457	54030	54120	85502	85502					0.026512319748235313
TAEEIAMLCVY	11	Oxidation (M)	_TAEEIAM(Oxidation (M))LCVY_		TAEEIAM(1)LCVY		TAEEIAM(71)LCVY	0	0	1		ENST00000475058.5_1_4:104000861-104006895:-|nuORF;nc|ENSG00000164039|Q9BUT1-3|BDH2;ENSG00000164039|ENST00000296424|BDH2	ENST00000475058.5_1_4:104000861-104006895:-|nuORF	ENST00000475058.5_1_4:104000861-104006895:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	629.78857421875	2	629.788332	1257.56211	0.22181	0.00013969	-0.097385	-6.1332E-05	0.12442	7.836E-05	629.7882565169242	83.412	1.4945	83.2	82.833	84.327	-0.21159					100	34	5	0	0	0	0.57755	2	10051	10041;10051		71.296	16.573	1	4644200			77460	7194	54031	54121	85503;85504	85504		300			-0.05636752128293665
TAEEIAMLCVY	11	Oxidation (M)	_TAEEIAM(Oxidation (M))LCVY_		TAEEIAM(1)LCVY		TAEEIAM(71)LCVY	0	0	1		ENST00000475058.5_1_4:104000861-104006895:-|nuORF;nc|ENSG00000164039|Q9BUT1-3|BDH2;ENSG00000164039|ENST00000296424|BDH2	ENST00000475058.5_1_4:104000861-104006895:-|nuORF	ENST00000475058.5_1_4:104000861-104006895:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	629.7884521484375	2	629.788332	1257.56211	-0.16673	-0.00010501	0.076791	4.8362E-05	-0.089944	-5.6646E-05	629.7884602080569	83.358	1.5341	83.189	82.819	84.353	-0.16916					92	35	4	0	0	0	0.57755	2	10066	10054;10066		71.296	19.96	1	4971400			77461	7194	54031	54121	85505;85506	85506		300			-0.05636752128293665
TAEEIAMLCVY	11	Oxidation (M)	_TAEEIAM(Oxidation (M))LCVY_		TAEEIAM(1)LCVY		TAEEIAM(71)LCVY	0	0	1		ENST00000475058.5_1_4:104000861-104006895:-|nuORF;nc|ENSG00000164039|Q9BUT1-3|BDH2;ENSG00000164039|ENST00000296424|BDH2	ENST00000475058.5_1_4:104000861-104006895:-|nuORF	ENST00000475058.5_1_4:104000861-104006895:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	629.788330078125	2	629.788332	1257.56211	-0.089543	-5.6393E-05	-0.12481	-7.8605E-05	-0.21435	-0.000135	629.788385661408	83.372	1.4972	83.234	82.867	84.364	-0.1386					93	34	5	0	0	0	0.57755	1	10044	10044		71.296	14.575	1	4981700			77462	7194	54031	54121	85507	85507		300			-0.05636752128293665
TAEKPTLQ	8	Unmodified	_TAEKPTLQ_					0	0	0			REV__ENSG00000154309|ENST00000675850|DISP1	REV__ENSG00000154309|ENST00000675850|DISP1	MSMS	OPSCC_40_ClassI_Rep-2	5	444.24530029296875	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.95	1	102.82	102.32	103.32	-0.12783								0	0	0	0.7608	1	12810	12810		37.159	0	1		+		77463	24954	54032	54122	85508	85508					0.028217921435384596
TAESWSPGQP	10	Unmodified	_TAESWSPGQP_					0	0	0		ENST00000420411.7_1_X:1520988-1531905:+|nuORF	ENST00000420411.7_1_X:1520988-1531905:+|nuORF	ENST00000420411.7_1_X:1520988-1531905:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2410278320312	2	530.240721	1058.46689	-0.19805	-0.00010502	0.68637	0.00036394	0.48832	0.00025893	530.2408548290116	110.65	0.59898	110.64	110.58	111.18	-0.011299					45	22	3	0	0	0	1.1286	1	13970	13970		25.574	0	1	44720			77464	13972	54033	54123	85509	85509					-0.06000601212804213
TAETYGKIV	9	Unmodified	_TAETYGKIV_					0	0	0		nc|ENSG00000104936|Q09013-2|DMPK;ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-5|DMPK;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-11|DMPK;nc|ENSG00000104936|Q09013-15|DMPK;ENSG00000104936|ENST00000291270|DMPK;nc|ENSG00000104936|Q09013-16|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK;nc|ENSG00000104936|Q09013-12|DMPK;nc|ENSG00000104936|Q09013-10|DMPK;nc|ENSG00000104936|Q09013-8|DMPK	nc|ENSG00000104936|Q09013-2|DMPK	nc|ENSG00000104936|Q09013-2|DMPK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.57958984375	2	491.266207	980.517862	1.2688	0.00062331	-3.7575	-0.0018459	-2.4887	-0.0012226	491.2639870231306	19.114	0.68765	19.114	18.823	19.511	0					23	13	2	0	0	0	0.024495	1	353	353		26.693	3.6504	1	33188			77465	2620	54034	54124	85510	85510					0.026823478320579852
TAFPATRNV	9	Unmodified	_TAFPATRNV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7640075683594	2	488.764166	975.513779	-0.82576	-0.0004036	-0.69718	-0.00034076	-1.5229	-0.00074436	488.76389381968465	40.584	0.71221	40.434	40.258	40.971	-0.1497					35	18	3	0	0	0	0.69446	1	3541	3541		46.457	0.48454	1	1455200			77466	4245	54035	54125	85511	85511					0.02504303129001073
TAFPATRNV	9	Unmodified	_TAFPATRNV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.764404296875	2	488.764166	975.513779	-0.12957	-6.3331E-05	-1.4331	-0.00070046	-1.5627	-0.00076379	488.76357364619463	40.802	1.0683	40.576	40.368	41.436	-0.22588					44	27	3	0	0	0	0.74711	1	3545	3545		42.864	2.0861	1	1626000			77467	4245	54035	54125	85512	85512					0.02504303129001073
TAFPATRNV	9	Unmodified	_TAFPATRNV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7646179199219	2	488.764166	975.513779	-0.97051	-0.00047435	-0.66436	-0.00032471	-1.6349	-0.00079907	488.76390983999875	40.846	0.85697	40.616	40.378	41.235	-0.23029					34	22	2	0	0	0	0.6238	1	3546	3546		51.193	7.0759	1	1754700			77468	4245	54035	54125	85513	85513					0.02504303129001073
TAGAHRLW	8	Unmodified	_TAGAHRLW_					0	0	0		ENSG00000099194|ENST00000370355|SCD;nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	ENSG00000099194|ENST00000370355|SCD;nc|ENSG00000145284|Q86SK9-2|SCD5	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.24627685546875	2	456.245944	910.477334	0.030368	1.3855E-05	1.2663	0.00057775	1.2967	0.0005916	456.2458440997499	41.952	0.99635	41.829	41.421	42.417	-0.12299					51	26	3	0	0	0	0.47665	1	3751	3751		87.754	43.377	1	3469600			77469	2061;5802	54036	54126	85514	85514					0.018514710229510456
TAGAHRLW	8	Unmodified	_TAGAHRLW_					0	0	0		ENSG00000099194|ENST00000370355|SCD;nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	ENSG00000099194|ENST00000370355|SCD;nc|ENSG00000145284|Q86SK9-2|SCD5	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2462158203125	2	456.245944	910.477334	-0.47849	-0.00021831	1.957	0.00089286	1.4785	0.00067455	456.24604623415115	42.129	1.3768	41.897	41.546	42.923	-0.23186					69	36	3	0	0	0	0.38451	3	3768	3755;3768;3778		99.375	49.839	1	5407500			77470	2061;5802	54036	54126	85515;85516;85517	85516					0.018514710229510456
TAGAHRLW	8	Unmodified	_TAGAHRLW_					0	0	0		ENSG00000099194|ENST00000370355|SCD;nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	ENSG00000099194|ENST00000370355|SCD;nc|ENSG00000145284|Q86SK9-2|SCD5	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.2464599609375	2	456.245944	910.477334	-0.13273	-6.0558E-05	0.92004	0.00041977	0.78731	0.00035921	456.24585986304567	42.177	1.5847	41.946	41.508	43.093	-0.23029					76	42	3	0	0	0	0.44658	4	3773	3751;3761;3773;3786		90.777	44.804	1	6927100			77471	2061;5802	54036	54126	85518;85519;85520;85521	85520					0.018514710229510456
TAGERHYRA	9	Unmodified	_TAGERHYRA_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-2|CES5A	REV__nc|ENSG00000159398|Q6NT32-2|CES5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.3313598632812	2	530.767771	1059.52099	-0.88571	-0.0004701	4.2819	0.0022727	3.3962	0.0018026	531.2698172378928	79.554	0.25374	79.554	79.405	79.658	0					8	5	2	0	0	0	0.024323	1	9876	9876		35.618	0	1	31173	+		77472	36827	54037	54127	85522	85522					-0.006389642705926235
TAGFNEVTIT	10	Unmodified	_TAGFNEVTIT_					0	0	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.8135986328125	2	526.766571	1051.51859	0.036284	1.9113E-05	2.6493	0.0013956	2.6856	0.0014147	526.7683540973725	85.954	0.81321	85.759	85.301	86.115	-0.19508					28	18	2	0	0	0	0.03519	1	10395	10395		23.523	0	1	231090	+		77473	24628	54038	54128	85523	85523					-0.005108575189069597
TAGGGELGSW	10	Unmodified	_TAGGGELGSW_					0	0	0		ENST00000313421.11_1_11:60786815-60787121:+|nuORF	ENST00000313421.11_1_11:60786815-60787121:+|nuORF	ENST00000313421.11_1_11:60786815-60787121:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.9282531738281	2	467.716882	933.41921	-0.42956	-0.00020091	-3.2201	-0.0015061	-3.6496	-0.001707	467.71513510890276	24.076	0.387	24.076	23.866	24.253	0					20	8	3	0	0	0	0.03519	1	1016	1016		27.882	5.9224	1	200690			77474	12100	54039	54129	85524	85524					-0.05016255412999726
TAGHSFSK	8	Unmodified	_TAGHSFSK_					0	0	0			REV__ENSG00000198816|ENST00000597229|ZNF358	REV__ENSG00000198816|ENST00000597229|ZNF358	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	417.7082214355469	2	417.70886	833.403166	0.8325	0.00034774	-1.5292	-0.00063876	-0.69669	-0.00029101	417.7079260531676	98.214	1.047	98.212	97.635	98.682	-0.0020828					40	24	3	0	0	0	1.0574	1	12474	12474		23.042	2.5607	1	221490	+		77475	28487	54040	54130	85525	85525					-0.020199168592398564
TAGIDKVVKK	10	Unmodified	_TAGIDKVVKK_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8093872070312	2	529.832049	1057.64954	0.90693	0.00048052	-0.86063	-0.00045599	0.046295	2.4529E-05	529.8314131374206	17.887	0.29948	17.733	17.557	17.857	-0.15403					7	5	2	0	0	0	0.03519	1	221	221		14.137	0	1	25439			77476	10951	54041	54131	85526	85526					0.12302577919808755
TAGLYYCL	8	Unmodified	_TAGLYYCL_					0	0	0			REV__ENST00000467405.1_1_10:14867493-14870188:-|nuORF	REV__ENST00000467405.1_1_10:14867493-14870188:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2425537109375	2	452.217672	902.42079	-0.13574	-6.1385E-05	-2.7158	-0.0012282	-2.8516	-0.0012895	452.21604839605266	53.916	0.092064	53.671	53.625	53.717	-0.2453					4	2	2	0	0	0	0.027866	1	5679	5679		14.664	0	1	89621	+		77477	27747	54042	54132	85527	85527					-0.034323376485986046
TAGPYPLI	8	Unmodified	_TAGPYPLI_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.7120056152344	2	416.234179	830.453805	-0.46089	-0.00019184	-3.7159	-0.0015467	-4.1768	-0.0017385	416.23245972518026	25.568	0.12408	25.534	25.474	25.598	-0.034395					4	2	2	0	0	0	0.027866	1	1210	1210		37.028	2.8559	1	13587			77478	6397	54043	54133	85528	85528					0.031796124657603286
TAGQHLLH	8	Unmodified	_TAGQHLLH_					0	0	0			REV__ENST00000439735.2_1_X:153640546-153648389:+|nuORF	REV__ENST00000439735.2_1_X:153640546-153648389:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.75262451171875	2	438.737951	875.46135	0.70814	0.00031069	-0.97604	-0.00042823	-0.2679	-0.00011754	438.7374588474655	49.593	0.74753	49.413	49.116	49.864	-0.18071					46	19	3	0	0	0	0.027866	1	4984	4984		24.203	0	1	1278800	+		77479	31100	54044	54134	85529	85529					0.018637647860373363
TAGRLTVT	8	Unmodified	_TAGRLTVT_					0	0	0		ENSG00000213023|ENST00000600079|SYT3;ENST00000595117.1_1_19:51125949-51129280:-|nuORF	ENSG00000213023|ENST00000600079|SYT3	ENSG00000213023|ENST00000600079|SYT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.2474670410156	2	409.74016	817.465767	0.95429	0.00039101	-0.39163	-0.00016047	0.56266	0.00023055	409.7398653686	37.211	0.6433	37.244	36.996	37.639	0.032269					26	16	2	0	0	0	0.027866	1	3017	3017		20.947	4.4738	1	662840			77480	10487	54045	54135	85530	85530					0.049732292089515795
TAGSLLIWAQ	10	Unmodified	_TAGSLLIWAQ_					0	0	0			REV__ENST00000519973.5_1_8:23430856-23431090:+|nuORF	REV__ENST00000519973.5_1_8:23430856-23431090:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2926635742188	2	530.295299	1058.57605	-0.2063	-0.0001094	-1.9984	-0.0010597	-2.2047	-0.0011691	530.2946997501793	101.79	1.1661	101.66	101.07	102.23	-0.12666					45	28	3	0	0	0	1.1286	1	12666	12666		25.574	1.3713	1	123180	+		77481	34283	54046	54136	85531	85531					0.04910029477309763
TAGVHVYVW	9	Unmodified	_TAGVHVYVW_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.27099609375	2	516.269084	1030.52362	-0.42347	-0.00021862	1.0608	0.00054766	0.63734	0.00032904	516.2692156015635	60.648	1.2501	60.442	60.091	61.341	-0.20599					69	30	3	0	0	0	0.20304	1	6763	6763		88.643	37.307	1	2247800			77482	1818;17643	54047	54137	85532	85532					0.009574911343634085
TAGVHVYVW	9	Unmodified	_TAGVHVYVW_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2691040039062	2	516.269084	1030.52362	-0.82751	-0.00042722	1.5457	0.000798	0.71819	0.00037078	516.2693763016872	60.553	1.0461	60.377	60.076	61.122	-0.1761					66	25	3	0	0	0	0.22754	1	6751	6751		85.359	25.241	1	2479700			77483	1818;17643	54047	54137	85533	85533					0.009574911343634085
TAGVHVYVW	9	Unmodified	_TAGVHVYVW_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2694091796875	2	516.269084	1030.52362	-0.65462	-0.00033796	0.79096	0.00040835	0.13633	7.0385E-05	516.2691982304773	60.702	1.0906	60.448	60.171	61.262	-0.25373					67	26	3	0	0	0	0.55828	2	6752	6752;6765		55.504	16.698	1	2161100			77484	1818;17643	54047	54137	85534;85535	85534					0.009574911343634085
TAHNKVAL	8	Unmodified	_TAHNKVAL_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.24835205078125	2	427.248152	852.481751	0.63312	0.0002705	-0.33803	-0.00014442	0.29508	0.00012607	427.2478659714968	22.806	0.65278	22.617	22.327	22.98	-0.18894					30	13	3	0	0	0	0.44658	2	857	844;857		90.777	27.47	1	763770			77485	3852	54048	54138	85536;85537	85537					0.049609354458425514
TAHNKVAL	8	Unmodified	_TAHNKVAL_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.2481384277344	2	427.248152	852.481751	-0.20933	-8.9437E-05	0.39486	0.0001687	0.18552	7.9264E-05	427.248186936857	22.898	0.78148	22.712	22.325	23.107	-0.18539					37	16	4	0	0	0	0.50239	2	845	845;857		85.359	13.982	1	781170			77486	3852	54048	54138	85538;85539	85538					0.049609354458425514
TAHNKVAL	8	Unmodified	_TAHNKVAL_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.24810791015625	2	427.248152	852.481751	1.3397	0.00057238	-1.1624	-0.00049663	0.17731	7.5754E-05	427.2475369084682	22.879	0.78322	22.688	22.296	23.079	-0.19117					34	16	4	0	0	0	0.6248	1	826	826		73.975	23.95	1	731720			77487	3852	54048	54138	85540	85540					0.049609354458425514
TAHRRNML	8	Unmodified	_TAHRRNML_					0	0	0		PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant;ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1	PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.7691650390625	2	499.76926	997.523967	0.84229	0.00042095	-1.1272	-0.00056333	-0.2849	-0.00014238	499.76858045528	19.683	0.49541	19.483	19.305	19.801	-0.2001					23	9	3	0	0	0	1.0239	1	443	443		33.516	1.5607	1	383430			77488	7353	54049	54139	85541	85541					0.02510587582582957
TAIAHRLN	8	Unmodified	_TAIAHRLN_					0	0	0			REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1	REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.25860595703125	2	448.259051	894.503549	0.60857	0.0002728	-0.43339	-0.00019427	0.17518	7.8527E-05	448.25878391946196	86.571	0.98483	86.429	86.103	87.088	-0.14217					42	22	3	0	0	0	1.0338	1	10512	10512		31.955	0	1	555460	+		77489	24360	54050	54140	85542	85542					0.05207740194418875
TAIKMIPGVV	10	Unmodified	_TAIKMIPGVV_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2985229492188	2	514.81227	1027.60999	0.6334	0.00032608	3.2288	0.0016622	3.8622	0.0019883	514.8141533122954	95.474	0.86924	95.351	95.072	95.941	-0.12251					32	19	3	0	0	0	0.03519	1	11763	11763		23.042	0	1	142560			77490	6352	54051	54141	85543	85543					0.0972873464472741
TAIRDLID	8	Unmodified	_TAIRDLID_					0	0	0			REV__ENSG00000123569|ENST00000217926|H2BW1	REV__ENSG00000123569|ENST00000217926|H2BW1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2394714355469	2	458.758549	915.502546	-0.42781	-0.00019626	-1.3945	-0.00063974	-1.8223	-0.000836	458.75757472981087	33.491	0.47558	33.497	33.288	33.764	0.0066223					22	12	2	0	0	0	0.027866	1	2397	2397		23.042	0	1	205200	+		77491	22706	54052	54142	85544	85544					0.04141481034844219
TAIRHHVL	8	Unmodified	_TAIRHHVL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7818603515625	2	473.782693	945.550834	-0.19549	-9.2619E-05	0.076775	3.6374E-05	-0.11871	-5.6244E-05	473.78255939841085	23.594	0.8898	23.414	23.112	24.002	-0.17989					46	20	4	0	0	0	0.68164	1	954	954		68.787	22.835	1	1804400			77492	2483	54053	54143	85545	85545					0.07588019465413254
TAIRHHVL	8	Unmodified	_TAIRHHVL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7820129394531	2	473.782693	945.550834	1.6966	0.00080383	-1.9811	-0.00093863	-0.28452	-0.0001348	473.78163175453676	23.641	0.53668	23.45	23.124	23.66	-0.19117					40	12	4	0	0	0	0.56592	1	942	942		79.451	33.499	1	1562200			77493	2483	54053	54143	85546	85546					0.07588019465413254
TAKFKIQV	8	Unmodified	_TAKFKIQV_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7912292480469	2	467.789653	933.564752	-0.083376	-3.9003E-05	3.6149	0.001691	3.5316	0.001652	467.79122278169785	17.497	0.39864	17.29	17.116	17.514	-0.20669					11	7	2	0	0	0	1.0574	1	184	184		25.45	0	1	78497			77494	9353	54054	54144	85547	85547					0.09531252173860594
TAKGKPVL	8	Unmodified	_TAKGKPVL_					0	0	0		nc|ENSG00000149313|Q9NRN7-2|AASDHPPT;ENSG00000149313|ENST00000278618|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.2637023925781	2	407.263271	812.511988	0.66845	0.00027224	-0.35064	-0.0001428	0.31781	0.00012943	407.26297773064385	21.407	0.81459	21.23	20.967	21.781	-0.17721					46	16	4	0	0	0	0.94517	1	659	659		45.952	10.751	1	825010			77495	6084	54055	54145	85548	85548					0.09823294111038194
TAKGKPVL	8	Unmodified	_TAKGKPVL_					0	0	0		nc|ENSG00000149313|Q9NRN7-2|AASDHPPT;ENSG00000149313|ENST00000278618|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	nc|ENSG00000149313|Q9NRN7-2|AASDHPPT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.26348876953125	2	407.263271	812.511988	0.58732	0.00023919	-0.27752	-0.00011302	0.30981	0.00012617	407.26302077991045	21.492	1.1607	21.301	20.833	21.994	-0.19072					48	23	3	0	0	0	0.68164	2	670	660;670		68.787	15.435	1	728080			77496	6084	54055	54145	85549;85550	85550					0.09823294111038194
TAKHKTVAL	9	Unmodified	_TAKHKTVAL_					0	0	0			REV__ENST00000432518.6_2_3:28798427-28798894:+|nuORF	REV__ENST00000432518.6_2_3:28798427-28798894:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7976379394531	2	484.798009	967.581465	0.55749	0.00027027	-1.5757	-0.00076388	-1.0182	-0.00049361	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.82115	1	6679	6679		37.812	0.65241	1	98413000	+		77497	32385	54056	54146	85551	85551					0.09637753059814713
TAKISDFSW	9	Unmodified	_TAKISDFSW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.7627563476562	2	527.763832	1053.51311	-0.39266	-0.00020723	-0.71214	-0.00037584	-1.1048	-0.00058308	527.7634059017231	62.417	1.136	62.196	61.844	62.98	-0.22097					67	30	4	0	0	0	0.013719	4	7031	7007;7019;7031;7044		168.26	80.541	1	13793000			77498	6950	54057	54147	85552;85553;85554;85555	85554					-0.011505363107289668
TAKISDFSW	9	Unmodified	_TAKISDFSW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.7637329101562	2	527.763832	1053.51311	-1.0749	-0.0005673	0.58592	0.00030923	-0.48899	-0.00025807	527.7641284009113	62.336	0.73499	62.158	61.766	62.501	-0.17781					57	20	4	0	0	0	0.014738	5	7012	6988;7000;7012;7024;7036		190.26	94.446	1	14104000			77499	6950	54057	54147	85556;85557;85558;85559;85560	85558					-0.011505363107289668
TAKISDFSW	9	Unmodified	_TAKISDFSW_					0	0	0		nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4;ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000162521|Q09028-3|RBBP4	nc|ENSG00000162521|Q09028-3|RBBP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.7635498046875	2	527.763832	1053.51311	-0.36976	-0.00019515	-0.51368	-0.0002711	-0.88344	-0.00046625	527.7634896509604	62.522	1.419	62.263	61.82	63.239	-0.25824					75	38	4	0	0	0	0.014738	3	7031	7007;7019;7031		163.15	77.99	1	14706000			77500	6950	54057	54147	85561;85562;85563	85563					-0.011505363107289668
TAKITSVAW	9	Unmodified	_TAKITSVAW_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5;GEMIN5|p.N821Tfs*6|1|0.08|ENSG00000082516|chr5:154905412-154905415|AATG/-|frameshift_variant	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7775573730469	2	488.776742	975.538931	-0.70012	-0.0003422	0.72866	0.00035615	0.028532	1.3946E-05	488.7768495012774	52.566	0.71032	52.439	52.003	52.713	-0.12706					36	17	3	0	0	0	0.74711	1	5468	5468		42.864	0	1	1033200			77501	1736	54058	54148	85564	85564					0.05018357931567152
TAKLDVLL	8	Unmodified	_TAKLDVLL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7749938964844	2	436.776211	871.537869	0.68058	0.00029726	-3.9115	-0.0017084	-3.2309	-0.0014112	436.77442546630624	90.156	2.1751	90.018	89.532	91.707	-0.13824					144	51	5	0	0	0	1.0338	1	10998	10998		31.955	1.4512	1	20832000	+		77502	20191	54059	54149	85565	85565					0.09696143562666748
TAKLKIRT	8	Unmodified	_TAKLKIRT_					0	0	0		ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.8082580566406	2	465.808377	929.6022	0.36213	0.00016868	-0.45074	-0.00020996	-0.088615	-4.1278E-05	465.8080335622689	21.267	0.67186	21.089	20.822	21.494	-0.17721					31	13	3	0	0	0	0.67154	1	642	642		69.628	7.5202	1	566850			77503	16022	54060	54150	85566	85566					0.134583434394699
TAKLKIRT	8	Unmodified	_TAKLKIRT_					0	0	0		ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.8083190917969	2	465.808377	929.6022	0.20129	9.3761E-05	-0.27575	-0.00012845	-0.074462	-3.4685E-05	465.80811148949374	21.392	0.633	21.202	20.931	21.564	-0.19072					33	12	4	0	0	0	0.85395	1	646	646		54.776	5.2403	1	507390			77504	16022	54060	54150	85567	85567					0.134583434394699
TAKLKIRT	8	Unmodified	_TAKLKIRT_					0	0	0		ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.8083190917969	2	465.808377	929.6022	-1.5494	-0.00072172	1.3887	0.00064689	-0.16065	-7.4832E-05	465.8089086366975	21.404	0.58504	21.191	20.921	21.506	-0.2128					31	11	4	0	0	0	0.62178	1	639	639		74.255	2.3776	1	571960			77505	16022	54060	54150	85568	85568					0.134583434394699
TAKLKRTL	8	Unmodified	_TAKLKRTL_					0	0	0		nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	nc|ENSG00000104960|Q86YD1-2|PTOV1	nc|ENSG00000104960|Q86YD1-2|PTOV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.8083190917969	2	465.808377	929.6022	0.36213	0.00016868	-0.45074	-0.00020996	-0.088615	-4.1278E-05	465.8080335622689	21.267	0.67186	21.089	20.822	21.494	-0.17721					31	13	3	0	0	0	0.53593	1	654	654		82.241	2.5279	1	566850			77506	2624	54061	54151	85569	85569					0.134583434394699
TAKLKRTL	8	Unmodified	_TAKLKRTL_					0	0	0		nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	nc|ENSG00000104960|Q86YD1-2|PTOV1	nc|ENSG00000104960|Q86YD1-2|PTOV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.80828857421875	2	465.808377	929.6022	-1.5494	-0.00072172	1.3887	0.00064689	-0.16065	-7.4832E-05	465.8089086366975	21.404	0.58504	21.191	20.921	21.506	-0.2128					31	11	4	0	0	0	0.47727	1	631	631		87.696	13.441	1	571960			77507	2624	54061	54151	85570	85570					0.134583434394699
TAKNAHLV	8	Unmodified	_TAKNAHLV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2711181640625	2	427.248152	852.481751	-0.08511	-3.6363E-05	1.9808	0.00084629	1.8957	0.00080992	427.2486800665955	39.361	0.55034	39.361	39.183	39.733	0					30	15	3	0	0	0	0.027866	1	3350	3350		25.45	0	1	227030			77508	1177	54062	54152	85571	85571					0.0496093544585392
TALDDRPQV	9	Unmodified	_TALDDRPQV_					0	0	0		nc|ENSG00000173276|Q9ULJ3-2|ZBTB21;ENSG00000173276|ENST00000310826|ZBTB21	nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	nc|ENSG00000173276|Q9ULJ3-2|ZBTB21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2925720214844	2	507.764363	1013.51417	0.45989	0.00023352	3.6782	0.0018677	4.1381	0.0021012	507.7681100411716	65.833	0.42225	65.833	65.643	66.065	0					12	10	2	0	0	0	0.02435	1	7851	7851		42.396	3.59	1	69237			77509	8362	54063	54153	85572	85572					0.007956780581935163
TALEEEEPEN	10	Unmodified	_TALEEEEPEN_					0	0	0			REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.750732421875	2	580.751315	1159.48808	-0.16858	-9.7904E-05	-1.4254	-0.00082778	-1.594	-0.00092569	580.7505417106084	73.886	0.52723	73.609	73.288	73.816	-0.2769					30	14	3	0	0	0	1.0997	1	8704	8704		32.751	0.79567	1	1635900	+		77510	26093	54064	54154	85573	85573					-0.08528680694621471
TALGHIFLSL	10	Unmodified	_TALGHIFLSL_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.3115234375	2	536.313492	1070.61243	0.51774	0.00027767	-3.3534	-0.0017985	-2.8357	-0.0015208	536.3117782675039	59.287	1.6514	59.287	58.714	60.366	0					121	44	4	0	0	0	0.52982	1	6775	6775		84.916	13.038	1	11726000	+		77511	26717	54065	54155	85574	85574					0.07994906374028687
TALGHIFLSL	10	Unmodified	_TALGHIFLSL_					0	0	0			REV__ENSG00000172869|ENST00000539542|DMXL1	REV__ENSG00000172869|ENST00000539542|DMXL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.3115844726562	2	536.313492	1070.61243	0.59805	0.00032074	-3.8519	-0.0020658	-3.2538	-0.0017451	536.3114599438708	59.499	1.1573	59.299	58.708	59.866	-0.20016					83	29	4	0	0	0	0.71272	1	6761	6761		66.429	4.3219	1	13592000	+		77512	26717	54065	54155	85575	85575					0.07994906374028687
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2353210449219	2	442.235242	882.45593	-0.187	-8.2699E-05	0.095085	4.205E-05	-0.091918	-4.0649E-05	442.2352870999212	33.992	1.0781	33.992	33.59	34.668	0					75	27	4	0	0	0	0.18915	2	2507	2507;2520		90.777	10.837	1	10490000	+		77513	23604	54066	54156	85576;85577	85576					0.010000412035765294
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.23553466796875	2	442.235242	882.45593	-0.03966	-1.7539E-05	-0.058251	-2.5761E-05	-0.09791	-4.3299E-05	442.2352293682261	33.816	1.2333	33.811	33.377	34.61	-0.0045624					79	31	4	0	0	0	0.31247	2	2467	2467;2480		73.975	8.1716	1	10562000	+		77514	23604	54066	54156	85578;85579	85578					0.010000412035765294
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.23541259765625	2	442.235242	882.45593	-0.0023553	-1.0416E-06	0.013759	6.0846E-06	0.011403	5.043E-06	442.23524894786095	33.737	1.2094	33.793	33.315	34.524	0.056572					86	30	5	0	0	0	0.13494	2	2416	2416;2428		102.77	8.7669	1	9637300	+		77515	23604	54066	54156	85580;85581	85580					0.010000412035765294
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	442.235242	882.45593	-0.187	-8.2699E-05	0.095085	4.205E-05	-0.091918	-4.0649E-05	442.2352870999212	33.992	1.0781	33.992	33.59	34.668	0	0.13887	6.8308E-05	NaN	102.77	75	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10490000	+		77516	23604	54066	54156							0.010000412035765294
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	442.235242	882.45593	-0.03966	-1.7539E-05	-0.058251	-2.5761E-05	-0.09791	-4.3299E-05	442.2352293682261	33.816	1.2333	33.811	33.377	34.61	-0.0045624	-0.041901	-6.7313E-05	NaN	102.77	79	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10562000	+		77517	23604	54066	54156							0.010000412035765294
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	442.235242	882.45593	-0.0023553	-1.0416E-06	0.013759	6.0846E-06	0.011403	5.043E-06	442.23524894786095	33.737	1.2094	33.793	33.315	34.524	0.056572	-0.059812	-3.6222E-06	NaN	102.77	86	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9637300	+		77518	23604	54066	54156							0.010000412035765294
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	442.235242	882.45593	-0.35426	-0.00015667	0.2044	9.0392E-05	-0.14987	-6.6276E-05	442.2352759057012	34.023	0.49467	33.816	33.549	34.043	-0.20696	-0.037034	0.00016499	NaN	102.77	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341730	+		77519	23604	54066	54156							0.010000412035765294
TALHGQGSL	9	Unmodified	_TALHGQGSL_					0	0	0			REV__ENSG00000135960|ENST00000258443|EDAR	REV__ENSG00000135960|ENST00000258443|EDAR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	442.235242	882.45593	-0.83222	-0.00036804	0.068696	3.038E-05	-0.76353	-0.00033766	442.2350581784867	34.028	0.62668	33.853	33.583	34.21	-0.17557	-0.00011765	4.4968E-05	NaN	102.77	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338410	+		77520	23604	54066	54156							0.010000412035765294
TALHQCCIDDF	11	Unmodified	_TALHQCCIDDF_					0	0	0		ENSG00000160972|ENST00000435887|PPP1R16A;ENST00000532806.1_1_8:145722766-145725943:+|nuORF;ENST00000526183.5_1_8:145724106-145726142:+|nuORF	ENSG00000160972|ENST00000435887|PPP1R16A	ENSG00000160972|ENST00000435887|PPP1R16A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.5130920410156	3	422.514491	1264.52164	-0.11506	-4.8613E-05	-3.991	-0.0016863	-4.1061	-0.0017349	422.51335710581304	31.637	1.8259	31.706	31.327	33.153	0.06896					157	46	7	0	0	0	1.0371	1	2123	2123		28.577	0.93281	1	32141000			77521	6854	54067	54157	85582	85582					-0.10003673728078866
TALKKYVL	8	Unmodified	_TALKKYVL_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3;TMEM181-HP1BP3|1|fusion	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.2999267578125	2	468.299853	934.585153	-0.76718	-0.00035927	-0.22135	-0.00010366	-0.98853	-0.00046293	468.2996276048917	39.114	0.83287	38.949	38.625	39.458	-0.16459					64	22	4	0	0	0	0.44658	3	3300	3277;3288;3300		90.777	39.839	1	6252000			77522	4247	54068	54158	85583;85584;85585	85585					0.11524422833656445
TALKKYVL	8	Unmodified	_TALKKYVL_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3;TMEM181-HP1BP3|1|fusion	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2989501953125	2	468.299853	934.585153	-0.45357	-0.0002124	-0.71084	-0.00033289	-1.1644	-0.00054529	468.29941073864063	39.203	0.85137	38.98	38.652	39.503	-0.22311					69	22	4	0	0	0	0.30053	3	3280	3280;3291;3304		111.65	43.164	1	6094200			77523	4247	54068	54158	85586;85587;85588	85586					0.11524422833656445
TALKKYVL	8	Unmodified	_TALKKYVL_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3;TMEM181-HP1BP3|1|fusion	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.29949951171875	2	468.299853	934.585153	-0.29431	-0.00013783	-0.71376	-0.00033425	-1.0081	-0.00047208	468.29939621872666	39.189	0.8026	38.964	38.669	39.472	-0.2257					65	21	4	0	0	0	0.44658	3	3274	3274;3286;3298		90.777	37.425	1	5432000			77524	4247	54068	54158	85589;85590;85591	85589					0.11524422833656445
TALKVGSTT	9	Unmodified	_TALKVGSTT_					0	0	0		ENSG00000143816|ENST00000272164|WNT9A	ENSG00000143816|ENST00000272164|WNT9A	ENSG00000143816|ENST00000272164|WNT9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.2521057128906	2	439.2531	876.491647	-1.1335	-0.00049788	-0.11655	-5.1194E-05	-1.25	-0.00054908	439.2529593069474	90.17	0.99512	90.015	89.522	90.517	-0.1552					62	23	4	0	0	0	0.99726	1	11031	11031		20.947	0	1	1935000			77525	5691	54069	54159	85592	85592					0.04846078660580133
TALLLLIIN	9	Unmodified	_TALLLLIIN_					0	0	0			REV__ENSG00000275591|ENST00000618742|XKR5	REV__ENSG00000275591|ENST00000618742|XKR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.29266357421875	2	492.328611	982.642668	-0.18806	-9.2587E-05	0.13935	6.8606E-05	-0.04871	-2.3981E-05	492.32857786467116	70.713	0.55363	70.724	70.384	70.938	0.011635					19	12	2	0	0	0	0.024457	1	8458	8458		29.15	6.1071	1	396000	+		77526	29191	54070	54160	85593	85593					0.1506526503924306
TALLPTLAF	9	Unmodified	_TALLPTLAF_					0	0	0		ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	ENSG00000187714|ENST00000374115|SLC18A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7820129394531	2	473.784036	945.553519	0.46405	0.00021986	-3.6141	-0.0017123	-3.15	-0.0014924	473.7821932567515	23.747	0.59815	23.545	23.237	23.835	-0.20193					39	13	4	0	0	0	0.55828	1	973	973		55.504	7.5886	1	1591300			77527	9649	54071	54161	85594	85594					0.07856430079709753
TALPLLKQF	9	Unmodified	_TALPLLKQF_					0	0	0		AK3-RCL1|1|fusion;ENSG00000120158|ENST00000381750|RCL1	AK3-RCL1|1|fusion	AK3-RCL1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.8182983398438	2	515.81841	1029.62227	0.031561	1.628E-05	-0.18693	-9.6421E-05	-0.15537	-8.0141E-05	515.8181640194292	71.175	1.0978	70.903	70.493	71.591	-0.27185					55	25	3	0	0	0	0.10174	2	8322	8276;8322		110.12	40.818	1	2394500			77528	54	54072	54162	85595;85596	85596					0.10864094379417111
TALPLLKQF	9	Unmodified	_TALPLLKQF_					0	0	0		AK3-RCL1|1|fusion;ENSG00000120158|ENST00000381750|RCL1	AK3-RCL1|1|fusion	AK3-RCL1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.819091796875	2	515.81841	1029.62227	0.041793	2.1558E-05	-0.14358	-7.406E-05	-0.10178	-5.2502E-05	515.8182308092439	71.133	1.0644	70.876	70.499	71.564	-0.25712					58	25	3	0	0	0	0.14024	1	8281	8281		101.6	46.097	1	2489200			77529	54	54072	54162	85597	85597					0.10864094379417111
TALPPVVSNP	10	Unmodified	_TALPPVVSNP_					0	0	0		ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	ENSG00000162924|ENST00000394479|REL	ENSG00000162924|ENST00000394479|REL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7927551269531	2	497.782025	993.549496	0.16075	8.0017E-05	-0.85554	-0.00042587	-0.6948	-0.00034586	497.7813455461315	71.133	0.26588	71.144	71.013	71.279	0.010735					10	6	2	0	0	0	0.03519	1	8543	8543		39.253	5.0803	1	110150			77530	7011	54073	54163	85598	85598					0.05246340585995313
TALQLYRKY	9	Unmodified	_TALQLYRKY_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547226.5_1_12:56711395-56716647:-|nuORF;ENST00000553230.1_1_12:56711395-56712273:-|nuORF;ENST00000551359.5_1_12:56711395-56713019:-|nuORF	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.2092895507812	2	578.329673	1154.64479	-1.5416	-0.00089158	2.2507	0.0013016	0.70903	0.00041005	578.3311657154635	56.051	0.35937	55.835	55.602	55.961	-0.21551					14	9	2	0	0	0	0.024261	1	6012	6012		64.207	10.856	1	243270			77531	4901	54074	54164	85599	85599					0.07365693777023807
TALQLYRKY	9	Unmodified	_TALQLYRKY_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547226.5_1_12:56711395-56716647:-|nuORF;ENST00000553230.1_1_12:56711395-56712273:-|nuORF;ENST00000551359.5_1_12:56711395-56713019:-|nuORF	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.329673	1154.64479	-1.0531	-0.00060902	2.3739	0.0013729	1.3209	0.0007639	578.3316475674739	55.944	1.1302	55.944	55.679	56.809	0	0.092021	0.0016342	NaN	64.207	68	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1294700			77532	4901	54074	54164							0.07365693777023807
TALQLYRKY	9	Unmodified	_TALQLYRKY_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547226.5_1_12:56711395-56716647:-|nuORF;ENST00000553230.1_1_12:56711395-56712273:-|nuORF;ENST00000551359.5_1_12:56711395-56713019:-|nuORF	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	578.329673	1154.64479	-0.55149	-0.00031895	0.77273	0.00044689	0.22123	0.00012795	578.3301110827518	56.059	0.73016	55.903	55.628	56.358	-0.15602	0.051007	-0.0002179	NaN	64.207	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1054600			77533	4901	54074	54164							0.07365693777023807
TALQLYRKY	9	Unmodified	_TALQLYRKY_					0	0	0		ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000547226.5_1_12:56711395-56716647:-|nuORF;ENST00000553230.1_1_12:56711395-56712273:-|nuORF;ENST00000551359.5_1_12:56711395-56713019:-|nuORF	ENSG00000135473|ENST00000440411|PAN2	ENSG00000135473|ENST00000440411|PAN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	578.329673	1154.64479	-1.0657	-0.00061635	1.0031	0.00058014	-0.062602	-3.6205E-05	578.3301954395407	55.702	0.68601	55.8	55.523	56.209	0.098015	-0.051664	4.8602E-05	NaN	64.207	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1198600			77534	4901	54074	54164							0.07365693777023807
TALRRSPLP	9	Unmodified	_TALRRSPLP_					0	0	0		ENST00000588460.5_1_17:74733495-74734059:+|nuORF	ENST00000588460.5_1_17:74733495-74734059:+|nuORF	ENST00000588460.5_1_17:74733495-74734059:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.3239440917969	2	505.808908	1009.60326	0.65666	0.00033214	-3.6122	-0.0018271	-2.9556	-0.0014949	505.80673844332347	79.699	0.29279	79.453	79.278	79.571	-0.2465					9	6	2	0	0	0	0.024025	1	9501	9501		52.937	0	1	53421			77535	17288	54075	54165	85600	85600					0.098845578083683
TALSKLKGL	9	Unmodified	_TALSKLKGL_					0	0	0			REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	REV__nc|ENSG00000164659|A8MWY0-2|ELAPOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2867126464844	2	465.80276	929.590967	-0.28489	-0.0001327	-0.35027	-0.00016315	-0.63515	-0.00029586	465.80245497579676	93.8	0.4874	93.799	93.584	94.071	-0.0011139					15	11	2	0	0	0	0.024487	1	11899	11899		17.365	0	1	120320	+		77536	25787	54076	54166	85601	85601					0.12335521345323741
TALSNLITW	9	Unmodified	_TALSNLITW_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7821350097656	2	509.782025	1017.5495	-0.53149	-0.00027094	0.42901	0.0002187	-0.10248	-5.2241E-05	509.7821157243389	89.015	1.0457	88.845	88.505	89.55	-0.17053					54	24	3	0	0	0	0.014034	3	10851	10839;10851;10865		166.68	55.03	1	1687900			77537	10047	54077	54167	85602;85603;85604	85603					0.041423405859859486
TALSNLITW	9	Unmodified	_TALSNLITW_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.7821044921875	2	509.782025	1017.5495	-0.27912	-0.00014229	0.12383	6.3125E-05	-0.15529	-7.9164E-05	509.7819943269547	88.972	1.2664	88.841	88.36	89.626	-0.13135					78	29	4	0	0	0	0.027092	3	10877	10854;10864;10877		143.89	49.194	1	1870600			77538	10047	54077	54167	85605;85606;85607	85607					0.041423405859859486
TALSNLITW	9	Unmodified	_TALSNLITW_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.7821350097656	2	509.782025	1017.5495	0.051716	2.6364E-05	-0.31331	-0.00015972	-0.26159	-0.00013336	509.7817837553238	89.017	1.0969	88.879	88.566	89.663	-0.13761					54	25	3	0	0	0	0.014454	3	10851	10838;10851;10864		185.55	73.901	1	1740800			77539	10047	54077	54167	85608;85609;85610	85609					0.041423405859859486
TALTRLSVK	9	Unmodified	_TALTRLSVK_					0	0	0		CCDC13|p.A181V|1|0.2|ENSG00000244607|chr3:42751997-42751997|G/A|missense_variant	CCDC13|p.A181V|1|0.2|ENSG00000244607|chr3:42751997-42751997|G/A|missense_variant	CCDC13|p.A181V|1|0.2|ENSG00000244607|chr3:42751997-42751997|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7948913574219	2	494.811116	987.60768	0.5326	0.00026354	2.6889	0.0013305	3.2215	0.001594	494.81238487374867	59.322	0.20333	59.141	59.032	59.235	-0.18133					6	4	2	0	0	0	0.024541	1	6551	6551		31.955	18.996	1	71281			77540	223	54078	54168	85611	85611					0.11338022231291234
TALVLVPGV	9	Unmodified	_TALVLVPGV_					0	0	0			REV__ENST00000395505.6_1_9:95640207-95640279:-|nuORF	REV__ENST00000395505.6_1_9:95640207-95640279:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7801818847656	2	434.778754	867.542954	-1.1223	-0.00048795	4.3443	0.0018888	3.222	0.0014009	434.7805290584824	38.451	0.9456	38.478	38.264	39.21	0.027275					92	25	5	0	0	0	0.96855	1	3163	3163		26.796	0	1	6751900	+		77541	31704	54079	54169	85612	85612					0.10388447425282266
TALVPLDL	8	Unmodified	_TALVPLDL_					0	0	0		ENST00000546766.5_1_12:98989167-98989365:+|nuORF;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000546766.5_1_12:98989167-98989365:+|nuORF	ENST00000546766.5_1_12:98989167-98989365:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.2536926269531	2	421.255111	840.49567	0.71106	0.00029954	-3.676	-0.0015485	-2.965	-0.001249	421.25343309500204	83.612	1.0668	83.4	83.049	84.116	-0.21159					57	24	3	0	0	0	1.0574	1	10097	10097		24.203	0	1	583200			77542	16513	54080	54170	85613	85613					0.06904168154278523
TALVRRLAL	9	Unmodified	_TALVRRLAL_					0	0	0			REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.81121826171875	2	506.834926	1011.6553	-0.85071	-0.00043117	-2.9004	-0.00147	-3.7511	-0.0019012	506.832763451704	54.608	0.2964	54.608	54.393	54.689	0					12	8	2	0	0	0	0.023007	1	5995	5995		56.721	1.9447	1	196560	+		77543	35391	54081	54171	85614	85614					0.1499372122210616
TALVSFVQSA	10	Unmodified	_TALVSFVQSA_					0	0	0		ENST00000566963.1_1_16:77225382-77227709:+|nuORF;ENSG00000103111|ENST00000248248|MON1B	ENST00000566963.1_1_16:77225382-77227709:+|nuORF	ENST00000566963.1_1_16:77225382-77227709:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.7790832519531	2	511.779482	1021.54441	-0.73891	-0.00037816	-0.58185	-0.00029778	-1.3208	-0.00067594	511.7793877978541	29.516	1.312	29.343	28.937	30.249	-0.17258					104	30	6	0	0	0	0.91678	1	1836	1836		52.937	20.124	1	8007700			77544	2469	54082	54172	85615	85615					0.034500367233818
TALYRVVSL	9	Unmodified	_TALYRVVSL_					0	0	0			REV__ENST00000574137.1_1_16:10846489-10855721:+|nuORF	REV__ENST00000574137.1_1_16:10846489-10855721:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.3059387207031	2	511.305667	1020.59678	0.39735	0.00020317	-0.95181	-0.00048666	-0.55446	-0.0002835	511.3051399281556	65.894	0.90424	65.894	65.358	66.262	0					70	23	4	0	0	0	0.15366	1	7848	7848		98.629	2.4389	1	14132000	+		77545	21376	54083	54173	85616	85616					0.08730619856999056
TAMKKGETL	9	Unmodified	_TAMKKGETL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	489.7677001953125	2	489.76806	977.521567	-0.063	-3.0856E-05	-0.17232	-8.4395E-05	-0.23532	-0.00011525	489.7678194303374	22.771	0.60553	22.583	22.327	22.933	-0.18894					25	12	3	0	0	0	0.2508	2	845	836;845		82.241	5.2932	1	586120			77546	7461	54084	54174	85617;85618	85618					0.03190694334261934
TAMKKGETL	9	Unmodified	_TAMKKGETL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.7668151855469	2	489.76806	977.521567	-0.38628	-0.00018919	0.22581	0.0001106	-0.16046	-7.859E-05	489.7680566884039	22.9	0.46273	22.715	22.46	22.923	-0.18539					24	9	3	0	0	0	0.15366	2	840	840;849		98.629	31.136	1	595840			77547	7461	54084	54174	85619;85620	85619					0.03190694334261934
TAMKKGETL	9	Unmodified	_TAMKKGETL_					0	0	0		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.7678527832031	2	489.76806	977.521567	1.2207	0.00059787	-1.534	-0.0007513	-0.31326	-0.00015342	489.76717788775966	22.878	0.46426	22.687	22.432	22.897	-0.19117					23	9	3	0	0	0	0.28047	2	821	821;832		78.264	14.057	1	524710			77548	7461	54084	54174	85621;85622	85621					0.03190694334261934
TAMKKGETL	9	Oxidation (M)	_TAM(Oxidation (M))KKGETL_		TAM(1)KKGETL		TAM(44)KKGETL	0	0	1		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7656555175781	2	497.765517	993.516481	2.124	0.0010573	-2.1863	-0.0010883	-0.06233	-3.1025E-05	497.76436009082823	18.841	1.3367	18.598	18.324	19.661	-0.24256					40	26	2	0	0	0	0.72494	1	335	335		44.377	7.2181	1	202880			77549	7461	54084	54175	85623	85623		309			0.019463904716531033
TAMKKGETL	9	Oxidation (M)	_TAM(Oxidation (M))KKGETL_					0	0	1		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.765517	993.516481	0.44658	0.00022229	-0.88269	-0.00043937	-0.43611	-0.00021708	497.7650432330053	18.838	0.74259	18.681	18.445	19.188	-0.15637	0.028444	0.00066758	NaN	44.377	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123570			77550	7461	54084	54175				309			0.019463904716531033
TAMKKGETL	9	Oxidation (M)	_TAM(Oxidation (M))KKGETL_					0	0	1		ENSG00000165732|ENST00000354185|DDX21;DDX21|p.G620Vfs*5|1|0.49|ENSG00000165732|chr10:68977644-68977644|G/-|frameshift_variant	ENSG00000165732|ENST00000354185|DDX21	ENSG00000165732|ENST00000354185|DDX21	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	497.765517	993.516481	0.46017	0.00022906	-0.80148	-0.00039895	-0.34131	-0.00016989	497.76491879823305	18.883	0.74166	18.679	18.46	19.202	-0.20371	0.026466	0.00074844	NaN	44.377	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109770			77551	7461	54084	54175				309			0.019463904716531033
TANESLFW	8	Unmodified	_TANESLFW_					0	0	0			REV__ENSG00000121898|ENST00000241305|CPXM2	REV__ENSG00000121898|ENST00000241305|CPXM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.27410888671875	2	484.229625	966.444697	-0.60838	-0.0002946	-4.4199	-0.0021402	-5.0283	-0.0024348	484.22759861241656	30.272	0.20889	30.28	30.205	30.414	0.0086689					9	4	3	0	0	0	0.027866	1	1921	1921		63.306	11.971	1	40685	+		77552	22615	54085	54176	85624	85624					-0.039867808905796664
TANGIALLW	9	Unmodified	_TANGIALLW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.77130126953125	2	479.77146	957.528367	0.010647	5.1081E-06	0.35446	0.00017006	0.3651	0.00017517	479.7714111398097	88.589	0.99354	88.418	87.931	88.924	-0.17053					67	23	4	0	0	0	0.06122	2	10786	10786;10796		124.59	23.383	1	2066700			77553	8454	54086	54177	85625;85626	85625					0.04790375277127623
TANGIALLW	9	Unmodified	_TANGIALLW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7710876464844	2	479.77146	957.528367	-0.045903	-2.2023E-05	0.40215	0.00019294	0.35625	0.00017092	479.771425577564	88.562	1.0437	88.43	88.032	89.076	-0.13135					64	24	4	0	0	0	0.31247	1	10810	10810		73.975	10.668	1	1798700			77554	8454	54086	54177	85627	85627					0.04790375277127623
TANGIALLW	9	Unmodified	_TANGIALLW_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7713317871094	2	479.77146	957.528367	0.32479	0.00015583	-0.071938	-3.4514E-05	0.25285	0.00012131	479.77121942885924	88.559	1.2113	88.422	88.105	89.316	-0.13744					73	28	4	0	0	0	0.27161	1	10773	10773		79.451	8.1553	1	1951000			77555	8454	54086	54177	85628	85628					0.04790375277127623
TANHASRHLS	10	Unmodified	_TANHASRHLS_					0	0	0			REV__ENSG00000103522|ENST00000337929|IL21R	REV__ENSG00000103522|ENST00000337929|IL21R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.2766723632812	2	547.278503	1092.54245	-0.80001	-0.00043783	-0.73105	-0.00040009	-1.5311	-0.00083792	547.2780627688246	28.881	1.0354	28.962	28.574	29.61	0.080812					89	25	5	0	0	0	1.0719	1	1699	1699		36.447	4.9169	1	12053000	+		77556	21391	54087	54178	85629	85629					-0.00011579241868275858
TANLRLTPD	9	Unmodified	_TANLRLTPD_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.82379150390625	2	500.774731	999.534909	-0.31448	-0.00015748	-0.52921	-0.00026502	-0.84369	-0.0004225	500.7745615189986	33.753	0.7956	33.753	33.454	34.25	0					40	20	3	0	0	0	0.0242	1	2455	2455		42.864	0	1	655880	+		77557	19892	54088	54179	85630	85630					0.03512268437839339
TANPKVGLV	9	Unmodified	_TANPKVGLV_					0	0	0			REV__nc|ENSG00000086061|P31689-2|DNAJA1	REV__nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7698974609375	2	449.77146	897.528367	0.50546	0.00022734	-3.3126	-0.0014899	-2.8072	-0.0012626	449.7697718573531	18.062	0.49113	17.931	17.712	18.203	-0.13148					21	9	3	0	0	0	0.87448	1	230	230		34.173	5.023	1	165610	+		77558	20765	54089	54180	85631	85631					0.07550375277139665
TANPKVGLV	9	Unmodified	_TANPKVGLV_					0	0	0			REV__nc|ENSG00000086061|P31689-2|DNAJA1	REV__nc|ENSG00000086061|P31689-2|DNAJA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	449.77146	897.528367	0.50546	0.00022734	-3.3126	-0.0014899	-2.8072	-0.0012626	449.7697718573531	18.062	0.49113	17.931	17.712	18.203	-0.13148	0.029963	0.0014378	NaN	34.173	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165610	+		77559	20765	54089	54180							0.07550375277139665
TANRLSAV	8	Unmodified	_TANRLSAV_					0	0	0		ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1	ENSG00000085382|ENST00000262903|HACE1	ENSG00000085382|ENST00000262903|HACE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2608642578125	2	416.237784	830.461016	0.02114	8.7994E-06	2.0869	0.00086865	2.108	0.00087745	416.23855400017294	19.827	1.5351	19.708	19.446	20.981	-0.11872					66	31	3	0	0	0	0.027866	1	548	548		60.294	10.852	1	323330			77560	1787	54090	54181	85632	85632					0.03900345066176669
TANVMMIY	8	Unmodified	_TANVMMIY_					0	0	0			REV__ENSG00000113494|ENST00000618457|PRLR	REV__ENSG00000113494|ENST00000618457|PRLR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.78265380859375	2	471.724806	941.43506	-0.84629	-0.00039921	-0.14218	-6.707E-05	-0.98847	-0.00046628	471.7245935131356	46.486	0.49876	46.284	46.005	46.504	-0.20226					31	13	3	0	0	0	0.027866	1	4495	4495		62.978	18.862	1	942100	+		77561	22069	54091	54182	85633	85633					-0.038000084919644905
TAPFVIHDIE	10	Unmodified	_TAPFVIHDIE_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	571.3405151367188	2	571.298039	1140.58152	-0.567	-0.00032393	0.3723	0.00021269	-0.1947	-0.00011123	571.2982037895032	72.501	0.74139	72.501	72.211	72.952	0					40	17	3	0	0	0	0.03519	1	8796	8796		54.776	19.158	1	581420			77562	3164	54092	54183	85634	85634					0.016857082691331016
TAPFVIHDIE	10	Unmodified	_TAPFVIHDIE_					0	0	0		nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	nc|ENSG00000112033|Q03181-4|PPARD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.3402099609375	2	571.298039	1140.58152	0.55082	0.00031468	-0.52789	-0.00030158	0.022931	1.3101E-05	571.2976464079061	72.844	0.6521	72.563	72.221	72.873	-0.28124					35	15	3	0	0	0	0.03519	1	8806	8806		47.657	8.4045	1	715870			77563	3164	54092	54183	85635	85635					0.016857082691331016
TAPGARKVN	9	Unmodified	_TAPGARKVN_					0	0	0		ENST00000318037.3_1_3:196230422-196230593:-|nuORF	ENST00000318037.3_1_3:196230422-196230593:-|nuORF	ENST00000318037.3_1_3:196230422-196230593:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.2644348144531	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	0.87448	1	10118	10118		34.173	2.2177	1	3048400			77564	12170	54093	54184	85636	85636					0.05435722848858404
TAPGARKVN	9	Unmodified	_TAPGARKVN_					0	0	0		ENST00000318037.3_1_3:196230422-196230593:-|nuORF	ENST00000318037.3_1_3:196230422-196230593:-|nuORF	ENST00000318037.3_1_3:196230422-196230593:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.26416015625	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	0.87448	2	9763	9751;9763		34.173	2.3088	1	3503800			77565	12170	54093	54184	85637;85638	85638					0.05435722848858404
TAPGPAPGQL	10	Unmodified	_TAPGPAPGQL_					0	0	0			REV__KLF1|p.K274Rfs*23|1|0.14|ENSG00000105610|chr19:12885411-12885411|G/-|frameshift_variant	REV__KLF1|p.K274Rfs*23|1|0.14|ENSG00000105610|chr19:12885411-12885411|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7447814941406	2	454.745442	907.476331	0.059719	2.7157E-05	-1.482	-0.00067391	-1.4222	-0.00064675	454.744685532615	101.18	1.8063	101.19	100.7	102.5	0.0090332					106	41	5	0	0	0	0.98754	1	12937	12937		47.657	1.7054	1	4694600	+		77566	21542	54094	54185	85639	85639					0.018892118633857535
TAPGPAPGQL	10	Unmodified	_TAPGPAPGQL_					0	0	0			REV__KLF1|p.K274Rfs*23|1|0.14|ENSG00000105610|chr19:12885411-12885411|G/-|frameshift_variant	REV__KLF1|p.K274Rfs*23|1|0.14|ENSG00000105610|chr19:12885411-12885411|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7447814941406	2	454.745442	907.476331	0.47062	0.00021401	-1.899	-0.00086356	-1.4284	-0.00064954	454.74449165346823	101.24	1.4761	101.24	100.76	102.24	-0.0054474					99	33	4	0	0	0	1.0393	1	12898	12898		40.778	0.20554	1	3938500	+		77567	21542	54094	54185	85640	85640					0.018892118633857535
TAPLRMPEG	9	Unmodified	_TAPLRMPEG_					0	0	0		ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.24603271484375	2	486.252577	970.490601	-0.25793	-0.00012542	0.33247	0.00016166	0.074537	3.6244E-05	486.25264378351176	23.516	1.149	23.337	22.975	24.124	-0.17989					46	26	2	0	0	0	0.024427	1	973	973		26.693	4.733	1	181330			77568	10466	54095	54186	85641	85641					0.004175410200218721
TAPPNGLTS	9	Unmodified	_TAPPNGLTS_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2557067871094	2	429.2218	856.429047	0.10886	4.6726E-05	0.057356	2.4619E-05	0.16622	7.1345E-05	429.22166574998107	44.927	0.89241	44.971	44.619	45.512	0.043877					74	25	4	0	0	0	0.024405	1	4217	4217		27.882	0	1	2799000			77569	3042	54096	54187	85642	85642					-0.004910674076199939
TAPPQQNEVV	10	Unmodified	_TAPPQQNEVV_					0	0	0			REV__ENSG00000136997|ENST00000621592|MYC	REV__ENSG00000136997|ENST00000621592|MYC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7805786132812	2	541.77747	1081.54039	-1.3653	-0.00073968	-3.1329	-0.0016973	-4.4982	-0.002437	541.7741802213892	28.358	0.73916	28.113	27.882	28.621	-0.24524					23	17	2	0	0	0	0.03519	1	1656	1656		29.15	8.2026	1	53194	+		77570	23716	54097	54188	85643	85643					0.0028794722966267727
TAPRLLEVGA	10	Unmodified	_TAPRLLEVGA_					0	0	0		ENST00000561090.5_1_14:24653890-24654746:-|nuORF	ENST00000561090.5_1_14:24653890-24654746:-|nuORF	ENST00000561090.5_1_14:24653890-24654746:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7993774414062	2	513.800749	1025.58694	2.0399	0.0010481	-4.1035	-0.0021084	-2.0636	-0.0010603	513.7982730022496	19.552	0.72682	19.618	19.34	20.067	0.066195					45	14	7	0	0	0	0.941	1	388	388		51.335	3.3759	1	663980			77571	16813	54098	54189	85644	85644					0.07517431851624679
TAPYKIDLILE	11	Unmodified	_TAPYKIDLILE_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	638.365234375	2	638.363379	1274.7122	0.22791	0.00014549	4.0029	0.0025553	4.2308	0.0027008	638.3655345643155	102.73	0.4415	102.72	102.46	102.9	-0.0046005					23	10	3	0	0	0	1.0238	1	13081	13081		31.53	7.3271	1	579150	+		77572	22427	54099	54190	85645	85645					0.08583679197340643
TAPYKIDLILE	11	Unmodified	_TAPYKIDLILE_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	638.363379	1274.7122	0.11979	7.6468E-05	3.7581	0.002399	3.8779	0.0024755	638.3659537659677	102.75	0.43907	102.75	102.48	102.92	0	0.015308	0.00020439	NaN	31.53	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485890	+		77573	22427	54099	54190							0.08583679197340643
TAPYKIDLILE	11	Unmodified	_TAPYKIDLILE_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	638.363379	1274.7122	0.80724	0.00051531	2.8141	0.0017964	3.6213	0.0023117	638.3648529993211	102.72	0.42897	102.73	102.5	102.93	0.0054245	-0.0040194	-0.0010009	NaN	31.53	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404950	+		77574	22427	54099	54190							0.08583679197340643
TAPYKIDLILE	11	Unmodified	_TAPYKIDLILE_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	638.363379	1274.7122	0.22791	0.00014549	4.0029	0.0025553	4.2308	0.0027008	638.3655345643155	102.73	0.4415	102.72	102.46	102.9	-0.0046005	-0.011289	0.00051695	NaN	31.53	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579150	+		77575	22427	54099	54190							0.08583679197340643
TAQVGDAEEL	10	Unmodified	_TAQVGDAEEL_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.7481689453125	2	516.745836	1031.47712	0.0088777	4.5875E-06	3.7521	0.0019389	3.761	0.0019435	516.7476483690072	63.629	1.0064	63.436	63.109	64.115	-0.19243					75	25	4	0	0	0	1.0236	1	7196	7196		42.864	0.46813	1	4368200	+		77576	28866	54100	54191	85646	85646					-0.03736038278225351
TARAVHQI	8	Unmodified	_TARAVHQI_					0	0	0		ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	ENSG00000159753|ENST00000334583|CARMIL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2587890625	2	448.259051	894.503549	0.20031	8.9789E-05	-0.47015	-0.00021075	-0.26985	-0.00012096	448.25872211244354	89.189	1.6752	89.051	88.482	90.157	-0.13761					97	39	4	0	0	0	1.0574	1	10857	10857		21.96	0	1	8594700			77577	6766	54101	54192	85647	85647					0.05207740194430244
TARLDVYTQW	10	Unmodified	_TARLDVYTQW_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	626.8203125	2	626.81967	1251.62479	-0.16682	-0.00010456	0.25244	0.00015824	0.085626	5.3672E-05	626.8196663681136	63.61	1.1289	63.382	63.015	64.144	-0.22773					75	27	4	0	0	0	0.1082	1	7199	7199		133.75	43.383	1	2201700			77578	18259;18260	54102	54193	85648	85648					0.009038980464310953
TARLDVYTQW	10	Unmodified	_TARLDVYTQW_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	626.8195190429688	2	626.81967	1251.62479	-0.88535	-0.00055496	0.83344	0.00052242	-0.051911	-3.2539E-05	626.8200903070735	63.588	1.1254	63.395	63.029	64.154	-0.19243					76	28	4	0	0	0	0.45127	1	7202	7202		93.442	5.2649	1	2686700			77579	18259;18260	54102	54193	85649	85649					0.009038980464310953
TARLDVYTQW	10	Unmodified	_TARLDVYTQW_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD	nc|ENSG00000129116|Q8WX93-8|PALLD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	626.81967	1251.62479	0.27144	0.00017014	-0.41289	-0.00025881	-0.14145	-8.8666E-05	626.8193062075328	63.68	1.0683	63.422	63.081	64.15	-0.25824	0.021825	-0.00071414	NaN	133.75	73	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2444500			77580	18259;18260	54102	54193							0.009038980464310953
TARPLLLDV	9	Unmodified	_TARPLLLDV_					0	0	0			REV__ENSG00000148215|ENST00000373680|OR5C1	REV__ENSG00000148215|ENST00000373680|OR5C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.31622314453125	2	499.305667	996.596781	0.093785	4.6827E-05	0.61635	0.00030774	0.71013	0.00035457	499.3055604650603	67.27	0.76965	67.294	66.942	67.712	0.023911					32	18	3	0	0	0	0.023239	1	7920	7920		64.207	6.396	1	714700	+		77581	24598	54103	54194	85650	85650					0.0983461985700842
TARPLLLDV	9	Unmodified	_TARPLLLDV_					0	0	0			REV__ENSG00000148215|ENST00000373680|OR5C1	REV__ENSG00000148215|ENST00000373680|OR5C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.305667	996.596781	0.50015	0.00024973	0.26631	0.00013297	0.76646	0.0003827	499.3055060268093	67.509	0.42204	67.253	67.033	67.455	-0.25516	0.020065	-0.00065115	NaN	64.207	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228180	+		77582	24598	54103	54194							0.0983461985700842
TARPLLLDV	9	Unmodified	_TARPLLLDV_					0	0	0			REV__ENSG00000148215|ENST00000373680|OR5C1	REV__ENSG00000148215|ENST00000373680|OR5C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.305667	996.596781	-0.24637	-0.00012301	1.3104	0.0006543	1.0641	0.00053129	499.3058949033198	67.486	0.54159	67.253	66.929	67.471	-0.23376	0.019225	0.00039152	NaN	64.207	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250750	+		77583	24598	54103	54194							0.0983461985700842
TARPLLLDV	9	Unmodified	_TARPLLLDV_					0	0	0			REV__ENSG00000148215|ENST00000373680|OR5C1	REV__ENSG00000148215|ENST00000373680|OR5C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.305667	996.596781	-0.70944	-0.00035423	1.3775	0.00068779	0.66806	0.00033356	499.3062256019178	67.414	0.45949	67.175	66.919	67.378	-0.23814	-0.057994	0.00045849	NaN	64.207	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277740	+		77584	24598	54103	54194							0.0983461985700842
TARQELNTI	9	Unmodified	_TARQELNTI_					0	0	0		ENSG00000156886|ENST00000389202|ITGAD	ENSG00000156886|ENST00000389202|ITGAD	ENSG00000156886|ENST00000389202|ITGAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.28515625	2	523.285463	1044.55637	-2.0023	-0.0010478	1.5694	0.00082123	-0.43296	-0.00022656	523.2863084544947	37.865	0.56648	37.865	37.632	38.199	0					42	16	3	0	0	0	0.28753	1	3121	3121		77.318	0.54344	1	8389000			77585	6558	54104	54195	85651	85651					0.03587653466570373
TARRTPIV	8	Unmodified	_TARRTPIV_					0	0	0			REV__ENSG00000183018|ENST00000329078|SPNS2	REV__ENSG00000183018|ENST00000329078|SPNS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2825927734375	2	457.282526	912.550499	0.076772	3.5106E-05	-0.1043	-4.7694E-05	-0.027527	-1.2588E-05	457.28231100748695	34.732	0.72501	34.514	34.185	34.91	-0.21806					43	17	4	0	0	0	1.0574	1	2568	2568		19.104	0.77911	1	2224900	+		77586	27525	54105	54196	85652	85652					0.09072599745570642
TARTRGPLLD	10	Unmodified	_TARTRGPLLD_					0	0	0			REV__ENST00000567736.5_1_16:89365554-89366736:-|nuORF	REV__ENST00000567736.5_1_16:89365554-89366736:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.8338012695312	2	550.314554	1098.61456	-0.030096	-1.6562E-05	2.9173	0.0016054	2.8872	0.0015888	550.3171294372578	105.68	0.30313	105.55	105.4	105.7	-0.12444					23	9	3	0	0	0	0.03519	1	13141	13141		45.972	5.1941	1	36977	+		77587	35327	54106	54197	85653	85653					0.06919335111865621
TARTVGVSLR	10	Unmodified	_TARTVGVSLR_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2986450195312	2	530.317097	1058.61964	-0.079631	-4.223E-05	2.9223	0.0015498	2.8427	0.0015075	530.3190481145624	18.261	0.29563	18.13	17.957	18.253	-0.13147					8	5	2	0	0	0	0.03519	1	253	253		58.23	17.452	1	22457	+		77588	28681	54107	54198	85654	85654					0.09267638974461079
TARVDGHRG	9	Unmodified	_TARVDGHRG_					0	0	0			REV__ENST00000585320.5_1_17:46019001-46022013:+|nuORF	REV__ENST00000585320.5_1_17:46019001-46022013:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.79022216796875	2	484.754664	967.494775	-0.72696	-0.00035239	3.8985	0.0018898	3.1715	0.0015374	484.756255237249	45.713	0.67999	45.561	45.309	45.989	-0.15156					37	19	3	0	0	0	0.024292	1	4478	4478		49.442	17.487	1	1996300	+		77589	32422	54108	54199	85655	85655					0.009727665579589484
TASAVNPQEI	10	Unmodified	_TASAVNPQEI_					0	0	0			REV__ENSG00000197070|ENST00000371421|ARRDC1	REV__ENSG00000197070|ENST00000371421|ARRDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2649536132812	2	515.264196	1028.51384	-0.8295	-0.00042741	-0.02702	-1.3923E-05	-0.85652	-0.00044133	515.2641114587249	61.853	0.77511	61.853	61.374	62.149	0					61	20	4	0	0	0	0.52765	1	7185	7185		85.161	0.2453	1	4094900	+		77590	28259	54109	54200	85656	85656					0.0007225833833217621
TASFAGKID	9	Unmodified	_TASFAGKID_					0	0	0		ENSG00000160124|ENST00000291458|MIX23;ENST00000498466.1_1_3:122087016-122102071:-|nuORF	ENSG00000160124|ENST00000291458|MIX23	ENSG00000160124|ENST00000291458|MIX23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.23785400390625	2	455.23745	908.460347	0.48569	0.0002211	-1.1699	-0.00053256	-0.68417	-0.00031146	455.23681456841655	102.94	0.65137	102.81	102.49	103.14	-0.12724					36	15	3	0	0	0	0.91321	1	12809	12809		31.53	2.3803	1	1184800			77591	6784	54110	54201	85657	85657					0.002455056264693667
TASLAGRGPM	10	Unmodified	_TASLAGRGPM_					0	0	0			REV__ENST00000491523.5_1_16:89627540-89627606:+|nuORF	REV__ENST00000491523.5_1_16:89627540-89627606:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	480.750201	959.48585	-0.011205	-5.3867E-06	-0.31588	-0.00015186	-0.32708	-0.00015724	480.75001617987033	32.716	4.5628	32.779	30.991	35.554	0.062885					321	117	4	0	0	0	1.0271	1	2132	2132		42.396	1.8235	1	7848800	+		77592	33727	54111	54202	85658	85658					0.0044865687726769465
TASSLFLHLP	10	Unmodified	_TASSLFLHLP_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.302001953125	2	543.303124	1084.5917	1.1837	0.00064312	-1.5178	-0.00082462	-0.33407	-0.0001815	543.3022819432259	74.333	1.4825	74.333	73.999	75.481	0					75	36	3	0	0	0	0.32474	1	9074	9074		106.42	10.225	1	9636800	+		77593	24842	54112	54203	85659	85659					0.05278315994382865
TASSLFTVKN	10	Unmodified	_TASSLFTVKN_					0	0	0			REV__ENSG00000028310|ENST00000467963|BRD9	REV__ENSG00000028310|ENST00000467963|BRD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2874755859375	2	534.290214	1066.56587	-0.41018	-0.00021916	-4.0681	-0.0021736	-4.4783	-0.0023927	534.2885772426994	107.45	0.68676	107.45	106.78	107.47	0.0018311					24	19	2	0	0	0	1.0508	1	13708	13708		39.253	5.0803	1	178810	+		77594	20035	54113	54204	85660	85660					0.035254217521242026
TASSSRAKTL	10	Unmodified	_TASSSRAKTL_					0	0	0			REV__ENST00000562859.5_2_15:42565693-42566462:+|nuORF	REV__ENST00000562859.5_2_15:42565693-42566462:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7713928222656	2	511.285463	1020.55637	-0.66184	-0.00033839	2.64	0.0013498	1.9782	0.0010114	511.7878942982317	84.452	0.16281	84.478	84.375	84.538	0.026558					5	3	2	0	0	0	0.03519	1	10482	10482		35.152	6.0025	1	58927	+		77595	35208	54114	54205	85661	85661					0.04691653466579737
TATLKKLA	8	Unmodified	_TATLKKLA_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.27471923828125	2	423.276378	844.538203	0.89158	0.00037738	-4.0135	-0.0016988	-3.122	-0.0013214	423.274572191514	110.14	0.65965	110.14	109.81	110.47	0					38	20	3	0	0	0	1.0574	1	13995	13995		13.775	0.81615	1	449880	+		77596	24798	54115	54206	85662	85662					0.10971563282510033
TATLKKLA	8	Unmodified	_TATLKKLA_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.275146484375	2	423.276378	844.538203	0.13071	5.5328E-05	-3.0954	-0.0013102	-2.9647	-0.0012549	423.274939460662	110.55	0.42538	110.42	110.14	110.57	-0.12524					34	13	3	0	0	0	1.0574	1	13586	13586		9.4706	1.2393	1	122380	+		77597	24798	54115	54206	85663	85663					0.10971563282510033
TATLKKLA	8	Unmodified	_TATLKKLA_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.27496337890625	2	423.276378	844.538203	0.45132	0.00019103	-3.763	-0.0015928	-3.3117	-0.0014017	423.2746798193047	87.952	0.92746	87.816	87.262	88.189	-0.13613					56	22	4	0	0	0	1.0574	2	10703	10703;10741		18.324	5.3652	1	1674900	+		77598	24798	54115	54206	85664;85665	85664					0.10971563282510033
TATLKKLA	8	Unmodified	_TATLKKLA_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.2749938964844	2	423.276378	844.538203	0.36652	0.00015514	-3.7091	-0.00157	-3.3425	-0.0014148	423.2747144936764	87.899	0.9429	87.762	87.289	88.232	-0.13744					51	22	3	0	0	0	1.0574	1	10694	10694		12.959	1.4482	1	872390	+		77599	24798	54115	54206	85666	85666					0.10971563282510033
TATLTTATD	9	Unmodified	_TATLTTATD_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.8964538574219	2	447.724372	893.434192	-0.8234	-0.00036866	2.6804	0.0012001	1.857	0.00083144	447.72530737805465	24.243	0.71036	24.196	23.913	24.623	-0.047148					30	15	3	0	0	0	0.024405	1	1027	1027		27.882	14.107	1	291790	+		77600	25084	54116	54207	85667	85667					-0.016788083356573225
TATRDISLD	9	Unmodified	_TATRDISLD_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2978820800781	2	496.256371	990.498189	-0.12037	-5.9734E-05	-2.6182	-0.0012993	-2.7386	-0.001359	496.25483886415043	54.828	0.59035	54.678	54.409	55	-0.15036					39	16	4	0	0	0	0.024344	1	6022	6022		54.776	42.569	1	627830			77601	2250	54117	54208	85668	85668					0.0025597182128649365
TATSLIQK	8	Unmodified	_TATSLIQK_					0	0	0			REV__SLC17A6|p.T382A|1|0.26|ENSG00000091664|chr11:22374857-22374857|A/G|missense_variant	REV__SLC17A6|p.T382A|1|0.26|ENSG00000091664|chr11:22374857-22374857|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	430.8865661621094	2	431.255643	860.496732	-0.79474	-0.00034274	2.9305	0.0012638	2.1358	0.00092107	431.2566938191861	21.205	0.96813	21.205	20.9	21.868	0					31	19	2	0	0	0	0.027866	1	710	710		30.504	1.3541	1	60847	+		77602	37494	54118	54209	85669	85669					0.06090382523188964
TATVILRKP	9	Unmodified	_TATVILRKP_					0	0	0		ENST00000398145.6_2_22:26877999-26878053:-|nuORF	ENST00000398145.6_2_22:26877999-26878053:-|nuORF	ENST00000398145.6_2_22:26877999-26878053:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2780456542969	2	499.821484	997.628415	-0.054059	-2.702E-05	-2.678	-0.0013385	-2.732	-0.0013655	499.8215740475705	60.98	0.63866	60.98	60.656	61.295	0					26	16	2	0	0	0	0.024495	1	7018	7018		34.173	7.4796	1	649830			77603	13619	54119	54210	85670	85670					0.1295061261093906
TAVALLRLL	9	Unmodified	_TAVALLRLL_					0	0	0		ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.3262939453125	2	485.326402	968.638252	0.12911	6.266E-05	-0.01108	-5.3776E-06	0.11803	5.7283E-05	485.32626868831886	80.704	1.5119	80.466	79.958	81.47	-0.23784					95	36	4	0	0	0	0.067814	2	9656	9646;9656		122.18	33.346	1	1830800			77604	3075	54120	54211	85671;85672	85672					0.15267800616322802
TAVALLRLL	9	Unmodified	_TAVALLRLL_					0	0	0		ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.32623291015625	2	485.326402	968.638252	0.28538	0.0001385	-0.28707	-0.00013932	-0.0016905	-8.2045E-07	485.3261498463195	80.611	1.7358	80.405	79.969	81.705	-0.20633					108	41	4	0	0	0	0.021872	2	9672	9660;9672		148.04	49.414	1	1893500			77605	3075	54120	54211	85673;85674	85674					0.15267800616322802
TAVALLRLL	9	Unmodified	_TAVALLRLL_					0	0	0		ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.32635498046875	2	485.326402	968.638252	0.16924	8.2135E-05	-0.14383	-6.9805E-05	0.025406	1.233E-05	485.32625032577266	80.523	1.5713	80.377	79.995	81.566	-0.146					96	37	4	0	0	0	0.027092	2	9643	9633;9643		143.89	33.767	1	1654800			77606	3075	54120	54211	85675;85676	85676					0.15267800616322802
TAVATVSIW	9	Unmodified	_TAVATVSIW_					0	0	0		ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	ENSG00000105392|ENST00000221996|CRX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	474.26336669921875	2	474.263468	946.512382	0.060428	2.8659E-05	0.2539	0.00012041	0.31433	0.00014907	474.26346198105165	78.103	0.89137	77.841	77.528	78.42	-0.26202					57	20	4	0	0	0	0.52323	1	9303	9303		57.811	2.3071	1	1661100			77607	2667	54121	54212	85677	85677					0.03698669040238656
TAVAVMCGEP	10	Unmodified	_TAVAVMCGEP_					0	0	0			REV__nc|ENSG00000100285|P12036-2|NEFH	REV__nc|ENSG00000100285|P12036-2|NEFH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7827453613281	2	489.225171	976.435788	-1.0362	-0.00050693	3.6448	0.0017831	2.6087	0.0012762	489.22691004853584	40.292	0.29037	40.315	40.237	40.527	0.023006					10	7	2	0	0	0	0.03519	1	3491	3491		49.442	0	1	129300	+		77608	21080	54122	54213	85678	85678					-0.053372138429040206
TAVLRPAL	8	Unmodified	_TAVLRPAL_					0	0	0		ENST00000360284.7_1_12:52449890-52450965:+|nuORF	ENST00000360284.7_1_12:52449890-52450965:+|nuORF	ENST00000360284.7_1_12:52449890-52450965:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.7688903808594	2	420.76872	839.522887	0.78549	0.00033051	-0.47807	-0.00020116	0.30742	0.00012935	420.7683962743981	58.846	1.1558	58.659	58.03	59.186	-0.18705					78	31	4	0	0	0	0.77775	1	6650	6650		60.972	7.6205	1	2790100			77609	12760	54123	54214	85679	85679					0.09670696485306962
TAVRLGVEG	9	Unmodified	_TAVRLGVEG_					0	0	0		nc|ENSG00000064270|O75185-3|ATP2C2	nc|ENSG00000064270|O75185-3|ATP2C2	nc|ENSG00000064270|O75185-3|ATP2C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2686767578125	2	451.258717	900.50288	-0.92002	-0.00041517	0.93771	0.00042315	0.017691	7.9831E-06	451.25896826188756	37.758	0.55781	37.676	37.36	37.918	-0.082516					43	15	4	0	0	0	0.02435	1	3121	3121		51.335	20.832	1	1766700			77610	18062	54124	54215	85680	85680					0.048649007547169276
TAVRQRND	8	Unmodified	_TAVRQRND_					0	0	0		ENST00000362042.7_1_17:46137782-46138226:+|nuORF	ENST00000362042.7_1_17:46137782-46138226:+|nuORF	ENST00000362042.7_1_17:46137782-46138226:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.28460693359375	2	480.254497	958.494441	-0.28024	-0.00013459	3.1413	0.0015086	2.861	0.001374	480.25587218421896	78.456	0.99381	78.472	78.073	79.067	0.015907					33	23	2	0	0	0	0.027866	1	9714	9714		23.042	1.0826	1	460530			77611	12814	54125	54216	85681	85681					0.013533468380956037
TAVSNLVSRAW	11	Unmodified	_TAVSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	602.3274536132812	2	602.327662	1202.64077	-0.49344	-0.00029721	0.043391	2.6136E-05	-0.45005	-0.00027108	602.3276567665104	63.947	1.016	63.719	63.404	64.42	-0.22773					84	25	5	0	0	0	1.4208E-07	4	7255	7235;7244;7255;7269		188.91	92.247	1	6214700			77612	12533	54126	54217	85682;85683;85684;85685	85684					0.04755604283309367
TAVSNLVSRAW	11	Unmodified	_TAVSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	602.32763671875	2	602.327662	1202.64077	-0.47395	-0.00028547	0.09379	5.6492E-05	-0.38016	-0.00022898	602.3277042138841	63.872	1.0913	63.68	63.38	64.471	-0.19243					82	27	5	0	0	0	3.172E-05	4	7247	7237;7247;7258;7274		171.33	69.871	1	6169900			77613	12533	54126	54217	85686;85687;85688;85689	85687					0.04755604283309367
TAVSNLVSRAW	11	Unmodified	_TAVSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	602.3267211914062	2	602.327662	1202.64077	-0.14277	-8.5995E-05	-0.25986	-0.00015652	-0.40263	-0.00024251	602.3274916162777	64.004	1.0375	63.746	63.425	64.463	-0.25825					80	26	4	0	0	0	0.00033477	4	7235	7235;7246;7257;7270		159.34	66.207	1	7115500			77614	12533	54126	54217	85690;85691;85692;85693	85690					0.04755604283309367
TAVSSSCLLI	10	Unmodified	_TAVSSSCLLI_					0	0	0			REV__ENSG00000136052|ENST00000258538|SLC41A2	REV__ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.268310546875	2	497.267893	992.521233	-0.50113	-0.0002492	1.1674	0.0005805	0.66625	0.00033131	497.26841631396877	36.088	1.7988	36.088	35.687	37.486	0					141	48	4	0	0	0	1.0142	1	2913	2913		44.117	3.3386	1	12749000	+		77615	23620	54127	54218	85694	85694					0.02467274614411963
TAVVKHVL	8	Unmodified	_TAVVKHVL_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.7765197753906	2	433.776545	865.538538	-0.26526	-0.00011506	0.57005	0.00024727	0.3048	0.00013221	433.77659678945935	30.576	0.83704	30.332	30.035	30.872	-0.24415					47	19	4	0	0	0	0.53523	1	1976	1976		82.305	24.494	1	893290			77616	7449	54128	54219	85695	85695					0.10038983002368695
TAVVKHVL	8	Unmodified	_TAVVKHVL_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.7765808105469	2	433.776545	865.538538	0.28399	0.00012319	-0.1456	-6.3159E-05	0.13838	6.0027E-05	433.77631104825105	30.603	1.0709	30.453	30.056	31.127	-0.14952					54	25	5	0	0	0	0.50239	1	1950	1950		85.359	10.843	1	913100			77617	7449	54128	54219	85696	85696					0.10038983002368695
TAVVKHVL	8	Unmodified	_TAVVKHVL_					0	0	0		ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;nc|ENSG00000165671|Q96L73-2|NSD1;NSD1|p.T2029Hfs*6|1|0.59|ENSG00000165671|chr5:177283860-177283860|A/-|frameshift_variant;NSD1|p.G1953Vfs*16|1|0.39|ENSG00000165671|chr5:177280797-177280797|G/-|frameshift_variant;NSD1|p.P1942Sfs*4|1|0.23|ENSG00000165671|chr5:177280764-177280765|-/T|frameshift_variant;NSD1|p.A1837Sfs*10|1|0.65|ENSG00000165671|chr5:177269800-177269801|-/A|frameshift_variant;NSD1|p.E1758Rfs*5|1|0.23|ENSG00000165671|chr5:177267685-177267685|G/-|frameshift_variant;NSD1|p.M1531Nfs*4|1|0.77|ENSG00000165671|chr5:177248267-177248268|-/A|frameshift_variant;NSD1|p.M1525Cfs*49|1|0.31|ENSG00000165671|chr5:177248253-177248253|G/-|frameshift_variant;NSD1|p.F1292Ifs*4|1|0.2|ENSG00000165671|chr5:177235895-177235896|-/T|frameshift_variant;NSD1|p.L1256*|1|0.19|ENSG00000165671|chr5:177212164-177212164|T/-|frameshift_variant;NSD1|p.R1200Lfs*5|1|0.26|ENSG00000165671|chr5:177211998-177212005|GGGATGAG/-|frameshift_variant;NSD1|p.G1095Afs*3|1|0.46|ENSG00000165671|chr5:177211681-177211681|G/-|frameshift_variant;NSD1|p.G1095Kfs*2|1|0.26|ENSG00000165671|chr5:177211682-177211692|GGCCACTTAAC/-|frameshift_variant;NSD1|p.S1086Rfs*6|1|0.82|ENSG00000165671|chr5:177211655-177211661|AGTAAAG/-|frameshift_variant;NSD1|p.D984*|1|0.21|ENSG00000165671|chr5:177211342-177211343|-/G|frameshift_variant;NSD1|p.T922Rfs*6|1|0.44|ENSG00000165671|chr5:177211164-177211164|C/-|frameshift_variant	ENSG00000165671|ENST00000439151|NSD1	ENSG00000165671|ENST00000439151|NSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	433.776545	865.538538	-0.51098	-0.00022165	0.68315	0.00029633	0.17217	7.4682E-05	433.7766705863805	30.516	1.0335	30.337	29.997	31.03	-0.17818	-0.036639	0.00023714	NaN	85.359	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	831620			77618	7449	54128	54219							0.10038983002368695
TAVWLHTEI	9	Unmodified	_TAVWLHTEI_					0	0	0		ENST00000374140.6_1_9:116359755-116359968:+|nuORF	ENST00000374140.6_1_9:116359755-116359968:+|nuORF	ENST00000374140.6_1_9:116359755-116359968:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.28955078125	2	535.287474	1068.5604	-0.48726	-0.00026082	3.175	0.0016995	2.6877	0.0014387	535.2887930482273	106.81	0.54827	106.81	106.55	107.1	0.0018311					27	17	2	0	0	0	0.72875	1	13640	13640		44.117	1.7207	1	147400			77619	13100	54129	54220	85697	85697					0.028857429602794582
TAVWPELN	8	Unmodified	_TAVWPELN_					0	0	0			REV__ENSG00000130287|ENST00000252575|NCAN	REV__ENSG00000130287|ENST00000252575|NCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2667541503906	2	465.239993	928.465432	1.0671	0.00049645	2.5078	0.0011667	3.5749	0.0016632	465.24095058614324	43.023	0.3987	43.054	42.83	43.229	0.030827					19	10	2	0	0	0	0.027866	1	3919	3919		23.042	1.0826	1	179200	+		77620	23098	54130	54221	85698	85698					-0.0016619051091311121
TAWPVFQP	8	Unmodified	_TAWPVFQP_					0	0	0		ENST00000487723.1_1_2:152684076-152684343:-|nuORF	ENST00000487723.1_1_2:152684076-152684343:-|nuORF	ENST00000487723.1_1_2:152684076-152684343:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.78167724609375	2	473.245078	944.475603	1.6572	0.00078426	1.7518	0.00082902	3.409	0.0016133	473.2476142475974	23.599	0.16378	23.408	23.321	23.485	-0.19117					5	3	2	0	0	0	0.027866	1	929	929		19.36	0	1	16094			77621	15373	54131	54222	85699	85699					0.0011441721433129715
TAYIRVKV	8	Unmodified	_TAYIRVKV_					0	0	0		ENSG00000136450|ENST00000258962|SRSF1	ENSG00000136450|ENST00000258962|SRSF1	ENSG00000136450|ENST00000258962|SRSF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.7667541503906	2	475.295102	948.575651	1.3788	0.00065533	-1.3697	-0.000651	0.0090995	4.3249E-06	475.29413327253656	55.198	0.48201	55.198	54.908	55.39	0					16	13	2	0	0	0	0.027866	1	6034	6034		31.955	18.996	1	92582			77622	5018	54132	54223	85700	85700					0.09930654548134044
TAYLVIGLP	9	Unmodified	_TAYLVIGLP_					0	0	0			REV__ENST00000560170.1_1_15:96828545-96870526:-|nuORF	REV__ENST00000560170.1_1_15:96828545-96870526:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7823791503906	2	473.784036	945.553519	-0.19549	-9.2619E-05	-2.7572	-0.0013063	-2.9526	-0.0013989	473.78255939841085	23.594	0.8898	23.414	23.112	24.002	-0.17989					46	20	4	0	0	0	0.75282	1	942	942		42.474	3.2216	1	1804400	+		77623	33918	54133	54224	85701	85701					0.07856430079709753
TAYPNLIL	8	Unmodified	_TAYPNLIL_					0	0	0		MEFV|p.F613L|1|0.12|ENSG00000103313|chr16:3243648-3243648|G/C|missense_variant	MEFV|p.F613L|1|0.12|ENSG00000103313|chr16:3243648-3243648|G/C|missense_variant	MEFV|p.F613L|1|0.12|ENSG00000103313|chr16:3243648-3243648|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2423400878906	2	452.760561	903.506569	-0.33154	-0.00015011	0.36268	0.00016421	0.031141	1.41E-05	452.7604711014616	53.892	0.11955	53.695	53.65	53.769	-0.19739					5	3	2	0	0	0	0.027866	1	5679	5679		14.664	0	1	152360			77624	17962	54134	54225	85702	85702					0.0509557052856735
TCAGPRWL	8	Unmodified	_TCAGPRWL_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.22747802734375	2	452.228905	902.443257	0.34718	0.00015701	-2.3205	-0.0010494	-1.9733	-0.00089237	452.228116985638	102.86	1.0716	102.85	102.46	103.53	-0.0046005					64	25	5	0	0	0	1.0338	1	13103	13103		31.955	3.7006	1	3369600	+		77625	19916	54135	54226	85703	85703					-0.011866934603403934
TCAGPRWL	8	Unmodified	_TCAGPRWL_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.22882080078125	2	452.228905	902.443257	-0.096225	-4.3516E-05	-1.4421	-0.00065218	-1.5384	-0.00069569	452.2283213741261	102.93	1.6273	102.8	102.45	104.08	-0.12783					71	39	4	0	0	0	1.0133	1	12836	12836		35.201	3.2459	1	4172900	+		77626	19916	54135	54226	85704	85704					-0.011866934603403934
TCAVLGNKG	9	Unmodified	_TCAVLGNKG_					0	0	0		ENST00000556392.5_1_14:50159826-50218487:+|nuORF;ENSG00000197776|ENST00000359332|KLHDC1;ENST00000555704.5_1_14:50159830-50218487:+|nuORF	ENST00000556392.5_1_14:50159826-50218487:+|nuORF	ENST00000556392.5_1_14:50159826-50218487:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	431.72503662109375	2	431.726195	861.437837	-0.10468	-4.5195E-05	-3.0723	-0.0013264	-3.177	-0.0013716	431.7247298564157	36.319	0.82759	36.114	35.819	36.647	-0.20518					60	21	4	0	0	0	0.11092	1	2836	2836		108.09	1.6723	1	3945500			77627	16708	54136	54227	85705	85705					0.0015758295720615934
TCCKIVENN	9	Unmodified	_TCCKIVENN_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2357788085938	2	512.233527	1022.4525	-0.68878	-0.00035282	3.7369	0.0019142	3.0481	0.0015613	512.2354030768644	57.536	0.65367	57.358	57.06	57.714	-0.17775					52	16	4	0	0	0	0.75397	1	6289	6289		42.396	1.8235	1	3214700			77628	5030	54137	54228	85706	85706					-0.05782712956965952
TCDLADQHNI	10	Unmodified	_TCDLADQHNI_					0	0	0		ENSG00000180815|ENST00000338883|MAP3K15;MAP3K15|p.G661Afs*12|1|0.14|ENSG00000180815|chrX:19398315-19398315|C/-|frameshift_variant	ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000180815|ENST00000338883|MAP3K15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7657470703125	2	565.250763	1128.48697	0.32392	0.0001831	-3.6775	-0.0020787	-3.3536	-0.0018956	565.2485917833657	76.928	0.38298	76.66	76.424	76.807	-0.26806					11	8	2	0	0	0	0.03519	1	9119	9119		25.574	0	1	93297			77629	8999	54138	54229	85707	85707					-0.0721317354450548
TCEAVVLGTL	10	Unmodified	_TCEAVVLGTL_					0	0	0		ENST00000593523.1_1_19:41897706-41903233:-|nuORF;ENSG00000077348|ENST00000221233|EXOSC5	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.2660217285156	2	503.267893	1004.52123	-0.96538	-0.00048585	-2.6523	-0.0013348	-3.6177	-0.0018207	503.2665193356901	81.894	1.5029	81.751	81.275	82.778	-0.14248					60	20	5	0	0	0	0.64538	2	9836	9836;9849		71.877	2.2498	1	1579500			77630	1609	54139	54230	85708;85709	85708					0.019152746144072808
TCEEYVKSL	9	Unmodified	_TCEEYVKSL_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3295288085938	2	536.254982	1070.49541	-1.6233	-0.00087051	2.4171	0.0012962	0.79384	0.0004257	536.2561089850022	41.025	1.3072	40.795	40.046	41.354	-0.23029					81	34	3	0	0	0	0.024292	1	3484	3484		68.787	12.066	1	609930			77631	1753	54140	54231	85710	85710					-0.037016196278727875
TCENLPGNY	9	Unmodified	_TCENLPGNY_					0	0	0		CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1;nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-4|CRB1	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	CRB1|p.W1034Cfs*4|1|0.46|ENSG00000134376|chr1:197434964-197434964|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7138671875	2	505.716024	1009.4175	-0.56138	-0.0002839	-3.1697	-0.001603	-3.7311	-0.0018869	505.7144061319646	31.476	4.612	31.324	29.54	34.152	-0.15231					250	113	4	0	0	0	0.85329	1	2173	2173		35.618	0	1	1760100			77632	584	54141	54232	85711	85711					-0.08683632493261939
TCEWSVLVVT	10	Unmodified	_TCEWSVLVVT_					0	0	0			REV__ENST00000392541.3_1_2:176042886-176042952:-|nuORF	REV__ENST00000392541.3_1_2:176042886-176042952:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8309326171875	2	568.78645	1135.55835	-0.44213	-0.00025148	-2.6006	-0.0014792	-3.0427	-0.0017307	568.7851343063933	90.112	0.5323	89.987	89.676	90.208	-0.12512					14	12	2	0	0	0	0.03519	1	11039	11039		42.396	1.618	1	104670	+		77633	31609	54142	54233	85712	85712					-0.004010538398460994
TCFCIEHATP	10	Unmodified	_TCFCIEHATP_					0	0	0			REV__ENST00000390243.2_2_2:89184913-89185054:+|nuORF	REV__ENST00000390243.2_2_2:89184913-89185054:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.3272094726562	2	561.241352	1120.46815	-0.21305	-0.00011957	3.2418	0.0018194	3.0287	0.0016998	561.2431539017517	68.924	1.2313	68.694	68.234	69.466	-0.23048					27	18	2	0	0	0	0.03519	1	7928	7928		34.173	0	1	291820	+		77634	31575	54143	54234	85713	85713					-0.08726426439920942
TCFTFDEYY	9	Unmodified	_TCFTFDEYY_					0	0	0		ENSG00000188771|ENST00000338832|PLET1	ENSG00000188771|ENST00000338832|PLET1	ENSG00000188771|ENST00000338832|PLET1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.2589721679688	2	594.73134	1187.44813	-0.6937	-0.00041257	0.0045671	2.7162E-06	-0.68913	-0.00040985	594.7312574155507	76.785	0.42263	76.617	76.396	76.818	-0.16854					16	9	2	0	0	0	0.024294	1	9089	9089		45.952	1.8352	1	91379			77635	9748	54144	54235	85714	85714					-0.13809898898853135
TCFTIVSLPL	10	Unmodified	_TCFTIVSLPL_					0	0	0			REV__nc|ENSG00000168398|P30411-2|BDKRB2	REV__nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.332275390625	2	547.301736	1092.58892	-0.7948	-0.00043499	0.83166	0.00045517	0.036864	2.0176E-05	547.3022168847821	96.284	0.62388	96.284	95.991	96.615	0					25	14	2	0	0	0	0.03519	1	12251	12251		34.173	6.2903	1	219690	+		77636	26256	54145	54236	85715	85715					0.0463272454521757
TCGLGHVDLIY	11	Unmodified	_TCGLGHVDLIY_					0	0	0			REV__ENSG00000054277|ENST00000366554|OPN3	REV__ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.7955322265625	2	595.797349	1189.58014	-1.5521	-0.00092471	-0.8871	-0.00052853	-2.4392	-0.0014532	595.7967172280273	60.898	0.80122	60.722	60.403	61.205	-0.1761					62	19	4	0	0	0	0.95124	1	6824	6824		47.657	3.5405	1	4448700	+		77637	20187	54146	54237	85716	85716					-0.007062490912630892
TCGSHFILI	9	Unmodified	_TCGSHFILI_					0	0	0		ENSG00000183389|ENST00000641156|OR56A4;ENSG00000188691|ENST00000532411|OR56A5;ENSG00000180934|ENST00000641900|OR56A1;nc|ENSG00000180934|Q8NGH5|OR56A1	ENSG00000183389|ENST00000641156|OR56A4	ENSG00000183389|ENST00000641156|OR56A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7806091308594	2	495.757495	989.500437	-0.044297	-2.1961E-05	-2.3505	-0.0011653	-2.3948	-0.0011872	495.75558437445056	88.864	0.67422	88.733	88.401	89.076	-0.13135					35	15	4	0	0	0	0.023355	1	10896	10896		76.847	23.495	1	280640			77638	9223	54147	54238	85717	85717					0.005267290254096224
TCHFPTVVY	9	Unmodified	_TCHFPTVVY_					0	0	0			REV__nc|ENSG00000148290|Q15526-2|SURF1	REV__nc|ENSG00000148290|Q15526-2|SURF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7570190429688	2	533.754953	1065.49535	-0.52429	-0.00027984	2.8931	0.0015442	2.3689	0.0012644	533.7564215659442	58.897	1.1568	58.71	58.39	59.547	-0.18795					83	28	5	0	0	0	0.55828	1	6503	6503		55.504	0	1	6308300	+		77639	24602	54148	54239	85718	85718					-0.0347757483721125
TCHLLTVQ	8	Unmodified	_TCHLLTVQ_					0	0	0		nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22	nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22	nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.76666259765625	2	457.741845	913.469137	-0.53596	-0.00024533	-4.0001	-0.001831	-4.536	-0.0020763	457.74010396127875	39.317	0.95167	39.341	38.956	39.908	0.023727					56	26	3	0	0	0	0.027866	1	3314	3314		25.45	1.2474	1	620000			77640	18257	54149	54240	85719	85719					0.0089415599129552
TCHWFERN	8	Unmodified	_TCHWFERN_					0	0	0			REV__ENST00000540811.5_1_12:24430159-24430189:-|nuORF	REV__ENST00000540811.5_1_12:24430159-24430189:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.25439453125	2	546.737625	1091.4607	-0.75779	-0.00041431	0.034252	1.8727E-05	-0.72353	-0.00039558	546.7377465628223	66.337	0.40012	66.124	65.794	66.194	-0.21327					11	9	2	0	0	0	0.027866	1	7586	7586		21.96	0	1	43475	+		77641	34758	54150	54241	85720	85720					-0.08137397925315781
TCIALERIE	9	Unmodified	_TCIALERIE_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.27880859375	2	524.278792	1046.54303	-0.36899	-0.00019345	-2.7671	-0.0014507	-3.1361	-0.0016442	524.2772647104605	56.631	0.82194	56.463	56.001	56.823	-0.1672					59	20	4	0	0	0	0.34489	1	6169	6169		69.628	13.194	1	7164800	+		77642	28479	54151	54242	85721	85721					0.021620793630063417
TCIGHTKAKT	10	Unmodified	_TCIGHTKAKT_					0	0	0		ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15	ENSG00000133863|ENST00000643185|TEX15	ENSG00000133863|ENST00000643185|TEX15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2823486328125	2	530.284408	1058.55426	-1.3324	-0.00070657	-2.6765	-0.0014193	-4.0089	-0.0021259	530.2830630883997	39.795	0.90594	39.682	39.15	40.055	-0.11222					94	24	5	0	0	0	0.77808	1	3483	3483		62.107	0.41614	1	30176000			77643	4736	54152	54243	85722	85722					0.02732901457125081
TCILLVVIN	9	Unmodified	_TCILLVVIN_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;ENST00000548979.1_1_12:46591442-46591783:-|nuORF	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3008117675781	2	494.298996	986.583439	0.89614	0.00044296	2.2975	0.0011357	3.1936	0.0015786	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	0.72875	1	12332	12332		44.117	9.9443	1	45891000			77644	3114	54153	54244	85723	85723					0.08961045753403596
TCIPHILV	8	Unmodified	_TCIPHILV_					0	0	0		ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.258056640625	2	448.257131	894.499709	0.35149	0.00015756	3.7748	0.0016921	4.1263	0.0018496	448.2586890631354	89.096	1.4611	89.112	88.623	90.084	0.015907					87	34	4	0	0	0	1.0572	1	11209	11209		28.254	0	1	7395300			77645	8717	54154	54245	85724	85724					0.048239343763498255
TCIPKVELV	9	Unmodified	_TCIPKVELV_					0	0	0		nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B;ACVR1B|p.R67C|1|0.28|ENSG00000135503|chr12:51975372-51975372|C/T|missense_variant	nc|ENSG00000135503|P36896-5|ACVR1B	nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29058837890625	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.75397	1	10416	10416		42.396	1.8235	1	10074000			77646	4903	54155	54246	85725	85725					0.062444553737236674
TCIQVENRY	9	Unmodified	_TCIQVENRY_					0	0	0		CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;CSMD3|p.N2403Mfs*5|1|0.42|ENSG00000164796|chr8:112319939-112319939|T/-|frameshift_variant;CSMD3|p.L2528Sfs*11|1|0.1|ENSG00000164796|chr8:112314020-112314020|G/-|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	CSMD3|p.G3382Rfs*15|1|0.32|ENSG00000164796|chr8:112247098-112247099|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.3195190429688	2	563.271498	1124.52844	-0.52751	-0.00029713	-2.4274	-0.0013673	-2.9549	-0.0016644	563.2700025719881	95.863	0.83987	95.863	95.434	96.274	0					38	19	3	0	0	0	0.023635	1	12191	12191		56.721	0	1	221310			77647	593	54156	54247	85726	85726					-0.028839927851549874
TCIVIDSCVY	10	Unmodified	_TCIVIDSCVY_					0	0	0			REV__ENST00000571589.5_1_16:14356081-14356159:+|nuORF	REV__ENST00000571589.5_1_16:14356081-14356159:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2595825195312	2	558.25921	1114.50387	0.55882	0.00031197	-0.66155	-0.00036932	-0.10273	-5.7351E-05	558.2590178270653	79.585	1.5747	79.339	78.947	80.522	-0.2465					97	37	6	0	0	0	0.62431	2	9531	9531;9545		74.255	18.751	1	7994800	+		77648	35405	54157	54248	85727;85728	85727					-0.0488038898290597
TCKCDLEGIMP	11	Carbamidomethyl (C),Oxidation (M)	_TCKC(Carbamidomethyl (C))DLEGIM(Oxidation (M))P_	TCKC(1)DLEGIMP	TCKCDLEGIM(1)P	TC(-38)KC(38)DLEGIMP	TCKCDLEGIM(44)P	0	1	1		ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.1900634765625	3	428.187386	1281.54033	1.3461	0.0005764	4.4131	0.0018896	5.7592	0.002466	428.1893608781979	25.066	0.93584	24.895	24.513	25.449	-0.17151					67	21	5	0	0	0	0.96926	1	1139	1139		43.651	6.1426	2	2118400			77649	1164	54158	54249	85729	85729	20	36			-0.08917880148510449
TCKCNGHADT	10	Unmodified	_TCKCNGHADT_					0	0	0		nc|ENSG00000074527|Q9HB63-3|NTN4;ENSG00000074527|ENST00000343702|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.27099609375	2	525.210583	1048.40661	-1.9246	-0.0010108	1.6701	0.00087716	-0.25453	-0.00013368	525.2113195646939	30.115	0.48863	30.115	29.855	30.343	0					20	11	2	0	0	0	0.03519	1	1880	1880		58.23	27.912	1	211840			77650	1529	54159	54250	85730	85730					-0.11565358139205273
TCKCNGHADT	10	Unmodified	_TCKCNGHADT_					0	0	0		nc|ENSG00000074527|Q9HB63-3|NTN4;ENSG00000074527|ENST00000343702|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.210583	1048.40661	-0.80998	-0.00042541	0.25485	0.00013385	-0.55513	-0.00029156	525.2106135806883	30.053	0.4503	30.062	29.839	30.289	0.0086708	0.10277	-0.00075527	NaN	58.23	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232240			77651	1529	54159	54250							-0.11565358139205273
TCKCNGHADT	10	Unmodified	_TCKCNGHADT_					0	0	0		nc|ENSG00000074527|Q9HB63-3|NTN4;ENSG00000074527|ENST00000343702|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.210583	1048.40661	-0.74914	-0.00039346	0.81409	0.00042757	0.064951	3.4113E-05	525.2106667728668	29.621	0.4348	29.7	29.489	29.924	0.078344	-0.25916	-0.00016783	NaN	58.23	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179020			77652	1529	54159	54250							-0.11565358139205273
TCKILHKSH	9	Unmodified	_TCKILHKSH_					0	0	0			REV__ENST00000537044.1_1_12:7647778-7647844:-|nuORF	REV__ENST00000537044.1_1_12:7647778-7647844:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.31787109375	2	533.794943	1065.57533	-1.3553	-0.00072344	-3.5979	-0.0019206	-4.9532	-0.002644	533.792795083371	33.447	0.39999	33.282	33.117	33.517	-0.16565					15	9	2	0	0	0	0.024427	1	2395	2395		19.997	0	1	159910	+		77653	34693	54160	54251	85731	85731					0.04516911556629566
TCLCVHFTH	9	Unmodified	_TCLCVHFTH_					0	0	0		ENST00000581517.1_1_17:71159284-71159497:-|nuORF	ENST00000581517.1_1_17:71159284-71159497:-|nuORF	ENST00000581517.1_1_17:71159284-71159497:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2908325195312	2	530.73878	1059.46301	-1.3006	-0.00069026	-0.27583	-0.00014639	-1.5764	-0.00083665	530.7382698652102	61.755	0.39277	61.577	61.412	61.804	-0.17781					14	9	2	0	0	0	0.024381	1	6905	6905		45.952	0	1	112930			77654	17166	54161	54252	85732	85732					-0.06434685511862881
TCLDLMASHY	10	Unmodified	_TCLDLMASHY_					0	0	0		ENST00000272895.11_2_2:215928917-216002887:-|nuORF	ENST00000272895.11_2_2:215928917-216002887:-|nuORF	ENST00000272895.11_2_2:215928917-216002887:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2540283203125	2	577.254459	1152.49437	-0.95601	-0.00055186	0.7564	0.00043664	-0.19961	-0.00011522	577.2546509481558	46.376	0.61704	46.173	45.855	46.472	-0.20226					39	16	3	0	0	0	0.85955	1	4470	4470		56.721	1.9447	1	1586100			77655	11657	54162	54253	85733	85733					-0.07578157268426366
TCLEKLCPF	9	Unmodified	_TCLEKLCPF_					0	0	0			REV__ENSG00000109089|ENST00000337231|CDR2L	REV__ENSG00000109089|ENST00000337231|CDR2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.775390625	2	527.259013	1052.50347	0.45306	0.00023888	-0.79154	-0.00041735	-0.33847	-0.00017846	527.2585019574985	59.426	0.5271	59.177	58.93	59.457	-0.24841					16	12	2	0	0	0	0.024418	1	6537	6537		45.972	15.469	1	204760	+		77656	21780	54163	54254	85734	85734					-0.020677639121004177
TCLLEPEV	8	Unmodified	_TCLLEPEV_					0	0	0			REV__GFI1|p.S241P|1|0.21|ENSG00000162676|chr1:92480666-92480666|A/G|missense_variant	REV__GFI1|p.S241P|1|0.21|ENSG00000162676|chr1:92480666-92480666|A/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	452.228515625	2	452.228236	902.44192	0.28257	0.00012779	-0.31185	-0.00014103	-0.02928	-1.3241E-05	452.2281336291809	103.03	1.39	102.86	102.46	103.85	-0.17034					74	33	5	0	0	0	0.97924	1	12786	12786		40.573	1.7665	1	4566600	+		77657	36069	54164	54255	85735	85735					-0.013203723397396061
TCLLLPGVVK	10	Unmodified	_TCLLLPGVVK_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2694091796875	2	521.820095	1041.62564	0.4326	0.00022574	3.3197	0.0017323	3.7523	0.001958	521.8218214841372	50.695	0.36996	50.514	50.353	50.723	-0.18071					14	9	2	0	0	0	0.03519	1	5154	5154		31.53	0	1	195310	+		77658	29168	54165	54256	85736	85736					0.10649021161793826
TCLPLRAWV	9	Unmodified	_TCLPLRAWV_					0	0	0			REV__ENST00000511348.1_1_4:100870425-100870494:-|nuORF	REV__ENST00000511348.1_1_4:100870425-100870494:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7960205078125	2	529.794412	1057.57427	-0.44902	-0.00023789	2.3359	0.0012376	1.8869	0.00099968	529.7956054961212	63.282	1.2297	63.031	62.683	63.912	-0.25141					82	32	3	0	0	0	0.4752	1	7362	7362		60.972	6.1956	1	11344000	+		77659	34119	54166	54257	85737	85737					0.04778697187703074
TCLRLVTLL	9	Unmodified	_TCLRLVTLL_					0	0	0			REV__ENST00000256190.12_1_11:9817484-9829655:-|nuORF	REV__ENST00000256190.12_1_11:9817484-9829655:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.2997436523438	2	516.31772	1030.62089	-0.30216	-0.00015601	0.8717	0.00045007	0.56954	0.00029406	516.8194729439119	104.16	0.48129	104.16	103.94	104.42	0					17	10	3	0	0	0	0.022832	1	13352	13352		71.877	0.58177	1	59837	+		77660	29550	54167	54258	85738	85738					0.10680137019016911
TCLVTMIAL	9	Unmodified	_TCLVTMIAL_					0	0	0		ENST00000295488.7_1_4:84375034-84375088:-|nuORF	ENST00000295488.7_1_4:84375034-84375088:-|nuORF	ENST00000295488.7_1_4:84375034-84375088:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.7618408203125	2	482.763932	963.51331	0.48268	0.00023302	-3.8184	-0.0018434	-3.3357	-0.0016104	482.7619029177118	86.128	0.91544	85.991	85.702	86.618	-0.13734					52	20	4	0	0	0	0.59099	1	10442	10442		53.351	1.0523	1	640690			77661	11825	54168	54259	85739	85739					0.030094240932612593
TCMLKFNDK	9	Unmodified	_TCMLKFNDK_					0	0	0			REV__ENSG00000166164|ENST00000394688|BRD7	REV__ENSG00000166164|ENST00000394688|BRD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2693481445312	2	550.26737	1098.52019	-0.59756	-0.00032882	3.1783	0.0017489	2.5807	0.0014201	550.2690955584096	65.103	1.6636	64.868	64.529	66.193	-0.2345					114	40	5	0	0	0	0.85329	1	7463	7463		35.618	1.4457	1	12086000	+		77662	25982	54169	54260	85740	85740					-0.02513263026162349
TCNEQELKL	9	Unmodified	_TCNEQELKL_					0	0	0			REV__ENSG00000139668|ENST00000298125|WDFY2	REV__ENSG00000139668|ENST00000298125|WDFY2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7908935546875	2	539.265881	1076.51721	-0.73556	-0.00039666	2.2978	0.0012391	1.5622	0.00084246	539.2684977313043	65.763	0.34483	65.794	65.699	66.044	0.030106					9	8	2	0	0	0	0.023837	1	7742	7742		54.776	0	1	67585	+		77663	23958	54170	54261	85741	85741					-0.017988148793165237
TCNKHCPFI	9	Unmodified	_TCNKHCPFI_					0	0	0			REV__nc|ENSG00000182901|P49802-3|RGS7	REV__nc|ENSG00000182901|P49802-3|RGS7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.7472534179688	2	531.746605	1061.47866	-0.1995	-0.00010608	3.292	0.0017505	3.0925	0.0016444	531.7481704992359	80.277	0.54189	80.071	79.843	80.385	-0.20633					31	12	3	0	0	0	0.6504	1	9637	9637		49.442	3.4693	1	536040	+		77664	27518	54171	54262	85742	85742					-0.049623989948258895
TCNKHCPFI	9	Unmodified	_TCNKHCPFI_					0	0	0			REV__nc|ENSG00000182901|P49802-3|RGS7	REV__nc|ENSG00000182901|P49802-3|RGS7	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	531.746605	1061.47866	-0.1272	-6.7638E-05	3.0788	0.0016372	2.9516	0.0015695	531.7480607595498	80.175	0.66669	80.029	79.743	80.409	-0.146	-0.0095827	-0.00011331	NaN	49.442	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493470	+		77665	27518	54171	54262							-0.049623989948258895
TCNLEKRPV	9	Unmodified	_TCNLEKRPV_					0	0	0		ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2825317382812	2	530.284408	1058.55426	-0.33104	-0.00017555	-3.7376	-0.001982	-4.0686	-0.0021575	530.2824904478331	39.751	1.0224	39.751	39.076	40.099	0					97	28	5	0	0	0	0.16468	2	3422	3422;3433		96.19	5.4138	1	34885000			77666	14735	54172	54263	85743;85744	85743					0.027329014571023436
TCNLEKRPV	9	Unmodified	_TCNLEKRPV_					0	0	0		ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.2825927734375	2	530.284408	1058.55426	-1.3324	-0.00070657	-2.6765	-0.0014193	-4.0089	-0.0021259	530.2830630883997	39.795	0.90594	39.682	39.15	40.055	-0.11222					94	24	5	0	0	0	0.096521	2	3433	3411;3433		111.65	3.5608	1	30176000			77667	14735	54172	54263	85745;85746	85746					0.027329014571023436
TCNLEKRPV	9	Unmodified	_TCNLEKRPV_					0	0	0		ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.282958984375	2	530.284408	1058.55426	-0.9302	-0.00049327	-2.857	-0.001515	-3.7872	-0.0020083	530.2829447798715	39.967	0.82627	39.99	39.561	40.387	0.023006					88	20	5	0	0	0	0.23085	1	3436	3436		84.916	2.675	1	31256000			77668	14735	54172	54263	85747	85747					0.027329014571023436
TCNLVSCCTD	10	2 Carbamidomethyl (C)	_TCNLVSC(Carbamidomethyl (C))C(Carbamidomethyl (C))TD_	TCNLVSC(1)C(1)TD		TC(-43)NLVSC(46)C(43)TD		0	2	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7210693359375	2	586.722666	1171.43078	-0.55115	-0.00032337	-2.3257	-0.0013645	-2.8768	-0.0016879	586.7211581774554	33.221	0.84306	32.99	32.711	33.554	-0.23107					46	20	3	0	0	0	1.0002	1	2359	2359		45.972	6.7194	3	2302500	+		77669	22148	54173	54264	85748	85748	288;289				-0.1480788576784562
TCNLVSCCTD	10	Carbamidomethyl (C)	_TCNLVSC(Carbamidomethyl (C))CTD_	TCNLVSC(0.968)C(0.032)TD		TC(-48)NLVSC(15)C(-15)TD		0	1	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.210205078125	2	558.211934	1114.40932	-0.42831	-0.00023909	-3.1982	-0.0017853	-3.6265	-0.0020244	558.2101602377339	35.08	1.0245	34.868	34.56	35.584	-0.21246					79	25	5	0	0	0	0.94316	1	2632	2632		51.193	6.6616	3	10412000	+		77670	22148	54173	54265	85749	85749	288;289				-0.14331270796560602
TCNMYKLQI	9	Unmodified	_TCNMYKLQI_					0	0	0			REV__L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|8|1|sense	REV__L1ME1_dup20732|chr11:12957040-12957600:-|1.2516025921769445|0.2151756898933248|2.54|512.0|8|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2772827148438	2	557.275195	1112.53584	0.87899	0.00048984	2.2202	0.0012373	3.0992	0.0017271	557.2762612312835	77.558	1.0816	77.315	77.041	78.123	-0.24233					70	25	5	0	0	0	0.39228	1	9258	9258		66.429	0.6261	1	3020500	+		77671	36209	54174	54266	85750	85750					-0.015929765090959336
TCNQALGLNE	10	Unmodified	_TCNQALGLNE_					0	0	0			REV__ENST00000467790.5_1_1:79115880-79120915:+|nuORF	REV__ENST00000467790.5_1_1:79115880-79120915:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.7487182617188	2	531.747856	1061.48116	0.099477	5.2896E-05	0.78819	0.00041912	0.88767	0.00047202	531.7480889392895	80.255	0.62064	80.017	79.789	80.409	-0.23784					34	14	3	0	0	0	0.96069	1	9616	9616		50.034	0.49747	1	463300	+		77672	23802	54175	54267	85751	85751					-0.04712272056190159
TCNQALGLNE	10	Unmodified	_TCNQALGLNE_					0	0	0			REV__ENST00000467790.5_1_1:79115880-79120915:+|nuORF	REV__ENST00000467790.5_1_1:79115880-79120915:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.7484130859375	2	531.747856	1061.48116	-0.1272	-6.7638E-05	0.7258	0.00038594	0.5986	0.00031831	531.7480607595498	80.175	0.66669	80.029	79.743	80.409	-0.146					34	15	3	0	0	0	0.78438	1	9604	9604		61.691	5.2575	1	493470	+		77673	23802	54175	54267	85752	85752					-0.04712272056190159
TCNVLASAVAF	11	Unmodified	_TCNVLASAVAF_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.27685546875	2	548.278792	1094.54303	-0.35218	-0.00019309	-3.1717	-0.001739	-3.5239	-0.0019321	548.2770046956497	62.046	0.78155	61.832	61.501	62.283	-0.21375					70	19	5	0	0	0	0.47044	2	6956	6956;6966		78.264	10.77	1	5832300	+		77674	24029	54176	54268	85753;85754	85753					-0.00045920637057861313
TCNVLASAVAF	11	Unmodified	_TCNVLASAVAF_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.2767944335938	2	548.278792	1094.54303	-0.94139	-0.00051614	-2.5645	-0.0014061	-3.5059	-0.0019222	548.2772801874378	61.937	0.9316	61.759	61.412	62.343	-0.17781					76	23	4	0	0	0	0.25893	3	6953	6943;6953;6964		93.143	13.123	1	5771100	+		77675	24029	54176	54268	85755;85756;85757	85756					-0.00045920637057861313
TCNVLASAVAF	11	Unmodified	_TCNVLASAVAF_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.2769165039062	2	548.278792	1094.54303	-0.42249	-0.00023164	-2.9218	-0.001602	-3.3443	-0.0018336	548.2771517027682	62.136	0.86468	61.878	61.464	62.328	-0.25725					82	21	5	0	0	0	0.55321	2	6956	6956;6966		72.879	3.2516	1	5808800	+		77676	24029	54176	54268	85758;85759	85758					-0.00045920637057861313
TCPGAYHLSC	10	Unmodified	_TCPGAYHLSC_					0	0	0		nc|ENSG00000056487|Q96EK2-4|PHF21B;nc|ENSG00000056487|Q96EK2-3|PHF21B;ENSG00000056487|ENST00000313237|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2884521484375	2	526.22042	1050.42629	0.51691	0.00027201	2.0279	0.0010671	2.5448	0.0013391	526.2213777681518	68.331	0.68581	68.1	67.794	68.48	-0.23048					35	16	3	0	0	0	0.03519	1	7895	7895		34.173	16.808	1	557210			77677	1197	54177	54269	85760	85760					-0.09690982128427095
TCQDMEKRAQ	10	Oxidation (M)	_TCQDM(Oxidation (M))EKRAQ_		TCQDM(1)EKRAQ		TCQDM(45)EKRAQ	0	0	1		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.T1556Nfs*3|1|0.74|ENSG00000134982|chr5:112840254-112840255|-/A|frameshift_variant;APC|p.D1519Mfs*4|1|0.28|ENSG00000134982|chr5:112840149-112840149|G/-|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.1830749511719	3	409.181512	1224.52271	1.2683	0.00051898	1.2201	0.00049924	2.4884	0.0010182	409.18237826460523	25.013	1.4866	24.842	24.339	25.825	-0.17151					110	34	6	0	0	0	1.0074	1	1113	1113		45.022	7.4223	1	8321400			77678	4847	54178	54270	85761	85761		197			-0.08057459359156383
TCQRRALQV	9	Unmodified	_TCQRRALQV_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.278564453125	2	537.795475	1073.5764	-1.5921	-0.00085621	-2.9941	-0.0016102	-4.5862	-0.0024664	537.7937917554892	25.004	0.60189	24.97	24.636	25.238	-0.034395					32	13	4	0	0	0	0.024427	1	1102	1102		34.173	0	1	726210	+		77679	25968	54179	54271	85762	85762					0.04255125925533321
TCRAIGIGAY	10	Unmodified	_TCRAIGIGAY_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000076555|O00763-2|ACACB;nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3021850585938	2	512.765852	1023.51715	0.31638	0.00016223	-3.6193	-0.0018559	-3.3029	-0.0016936	512.7639322914248	51.635	0.62318	51.516	51.281	51.904	-0.11876					28	16	2	0	0	0	0.03519	1	5281	5281		49.442	0	1	268900			77680	1585;11066	54180	54272	85763	85763					0.006332299113410045
TCRSLRAVAS	10	Unmodified	_TCRSLRAVAS_					0	0	0		ENSG00000181408|ENST00000313135|UTS2R	ENSG00000181408|ENST00000313135|UTS2R	ENSG00000181408|ENST00000313135|UTS2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.8073120117188	2	532.287482	1062.56041	-0.34244	-0.00018228	3.0458	0.0016212	2.7033	0.0014389	532.2888981241199	58.656	0.56516	58.474	58.145	58.71	-0.18134					17	13	2	0	0	0	0.03519	1	6422	6422		41.427	5.8083	1	451600			77681	9041	54181	54273	85764	85764					0.03163419688644353
TCSAHFTVVT	10	Unmodified	_TCSAHFTVVT_					0	0	0		nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7899780273438	2	533.255317	1064.49608	-0.6373	-0.00033984	-2.6678	-0.0014226	-3.3051	-0.0017624	533.2537678732514	64.338	0.51208	64.083	63.795	64.307	-0.25563					31	12	3	0	0	0	0.03519	1	7313	7313		54.776	21.964	1	656970			77682	18535	54182	54274	85765	85765					-0.033587801881594714
TCSCLPGRMV	10	Unmodified	_TCSCLPGRMV_					0	0	0			REV__ENST00000358368.4_1_19:7692307-7692657:-|nuORF	REV__ENST00000358368.4_1_19:7692307-7692657:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3181762695312	2	533.745747	1065.47694	-0.32695	-0.00017451	-3.5815	-0.0019116	-3.9084	-0.0020861	533.7435327626798	33.728	0.40027	33.497	33.314	33.714	-0.23107					16	9	2	0	0	0	0.03519	1	2425	2425		58.782	0	1	486820	+		77683	30855	54183	54275	85766	85766					-0.05317776075071379
TCSCTPSGMKL	11	Carbamidomethyl (C),Oxidation (M)	_TC(Carbamidomethyl (C))SCTPSGM(Oxidation (M))KL_	TC(1)SCTPSGMKL	TCSCTPSGM(1)KL	TC(40)SC(-40)TPSGMKL	TCSCTPSGM(77)KL	0	1	1			REV__ENST00000299886.8_1_17:71196709-71196754:+|nuORF	REV__ENST00000299886.8_1_17:71196709-71196754:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	600.75439453125	2	600.756509	1199.49846	-0.72662	-0.00043652	-2.1812	-0.0013104	-2.9078	-0.0017469	600.7550524399804	58.771	1.1797	58.771	58.457	59.637	0					71	31	4	0	0	0	0.48498	1	6687	6687		77.318	11.852	2	5674400	+		77684	30038	54184	54276	85767	85767	393	866			-0.09330435837023288
TCSLGGPMTLL	11	Oxidation (M)	_TCSLGGPM(Oxidation (M))TLL_		TCSLGGPM(1)TLL		TCSLGGPM(67)TLL	0	0	1		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.7747192382812	2	554.772485	1107.53042	0.036059	2.0005E-05	3.6951	0.00205	3.7312	0.00207	554.7745465594048	57.721	0.71687	57.531	57.112	57.829	-0.19017					54	18	4	0	0	0	0.63824	1	6342	6342		67.494	6.5217	1	6075200			77685	2797	54185	54277	85768	85768		106			-0.01904700091563427
TCSLLGPDL	9	Unmodified	_TCSLLGPDL_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE;ITGAE|p.N825Dfs*5|1|0.08|ENSG00000083457|chr17:3739854-3739855|-/ATCTCAATATGTC|frameshift_variant;ITGAE|p.A430Rfs*14|1|0.44|ENSG00000083457|chr17:3755213-3755213|C/-|frameshift_variant	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	460.2690124511719	2	459.733686	917.452819	-0.16963	-7.7986E-05	0.90709	0.00041702	0.73745	0.00033903	459.73386882328384	67.559	0.50195	67.326	67.134	67.636	-0.23375					14	11	2	0	0	0	0.024405	1	7795	7795		35.618	14.671	1	52499			77686	1752	54186	54278	85769	85769					-0.009209699654547876
TCSLLGPDL	9	Unmodified	_TCSLLGPDL_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE;ITGAE|p.N825Dfs*5|1|0.08|ENSG00000083457|chr17:3739854-3739855|-/ATCTCAATATGTC|frameshift_variant;ITGAE|p.A430Rfs*14|1|0.44|ENSG00000083457|chr17:3755213-3755213|C/-|frameshift_variant	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	459.733686	917.452819	-0.015175	-6.9765E-06	0.19343	8.8928E-05	0.17826	8.1952E-05	459.733718643237	67.195	0.52414	67.195	66.926	67.45	0	-0.068737	-7.0304E-07	NaN	27.882	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114740			77687	1752	54186	54278							-0.009209699654547876
TCSSNRAFY	9	Unmodified	_TCSSNRAFY_					0	0	0			REV__ENST00000381774.8_1_16:12758653-12758746:-|nuORF	REV__ENST00000381774.8_1_16:12758653-12758746:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3150024414062	2	524.729466	1047.44438	-0.96799	-0.00050793	0.96001	0.00050375	-0.0079753	-4.1848E-06	524.7299559946754	69.298	0.66737	69.034	68.664	69.331	-0.26359					22	15	2	0	0	0	0.024541	1	8016	8016		19.104	0	1	130490	+		77688	31525	54187	54279	85770	85770					-0.07744523882070098
TCTLETASM	9	Unmodified	_TCTLETASM_					0	0	0		ENST00000331302.11_1_17:183569-183695:-|nuORF	ENST00000331302.11_1_17:183569-183695:-|nuORF	ENST00000331302.11_1_17:183569-183695:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7738037109375	2	478.706811	955.399068	0.70853	0.00033918	0.13351	6.3914E-05	0.84204	0.00040309	478.70682809010515	69.429	0.45177	69.136	68.86	69.312	-0.29292					18	11	2	0	0	0	0.024294	1	8335	8335		29.15	0	1	158280			77689	12341	54188	54280	85771	85771					-0.08041510459474921
TCTSAVRAEFN	11	Unmodified	_TCTSAVRAEFN_					0	0	0		ENST00000437099.6_1_17:9818975-9819089:-|nuORF	ENST00000437099.6_1_17:9818975-9819089:-|nuORF	ENST00000437099.6_1_17:9818975-9819089:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.781982421875	2	599.779687	1197.54482	-0.70344	-0.00042191	3.953	0.0023709	3.2496	0.001949	599.7819359583871	82.595	0.99417	82.455	81.999	82.993	-0.14014					61	22	4	0	0	0	0.99689	1	9981	9981		37.508	1.0614	1	2471000			77690	14290	54189	54281	85772	85772					-0.04604911619071572
TCVFLVVLLA	10	Unmodified	_TCVFLVVLLA_					0	0	0		nc|ENSG00000174807|Q9HCU0-2|CD248;ENSG00000174807|ENST00000311330|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.8057250976562	2	539.322471	1076.63039	-0.40749	-0.00021977	2.2347	0.0012052	1.8272	0.00098546	539.3237008214093	41.378	0.34423	41.254	41.086	41.43	-0.12317					15	9	2	0	0	0	0.03519	1	3689	3689		49.442	17.912	1	135570			77691	8500	54190	54282	85773	85773					0.09513905304561376
TCYTERNHTY	10	Unmodified	_TCYTERNHTY_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	644.2723999023438	2	644.274769	1286.53499	-2.6226	-0.0016897	-1.184	-0.00076284	-3.8067	-0.0024526	644.2738949435368	48.247	0.98928	48.149	47.817	48.806	-0.097553					95	26	5	0	0	0	0.77808	1	4795	4795		62.107	1.9892	1	6186000			77692	9280	54191	54283	85774	85774					-0.09682099624455986
TDAEVLQRLAL	11	Unmodified	_TDAEVLQRLAL_					0	0	0			REV__CON__A2AB72	REV__CON__A2AB72	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	614.322021484375	2	614.848427	1227.6823	0.33658	0.00020694	-0.35288	-0.00021697	-0.016304	-1.0024E-05	614.849419147542	68.363	0.19523	68.133	68	68.195	-0.23048					5	4	2	0	0	0	0.024732	1	7901	7901		32.812	12.816	1	61587	+	+	77693	19520	54192	54284	85775	85775					0.07756740251988958
TDAHAQPVPW	10	Unmodified	_TDAHAQPVPW_					0	0	0			REV__ENSG00000075643|ENST00000261326|MOCOS	REV__ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.27001953125	2	561.272355	1120.53016	-1.2106	-0.00067947	-3.9378	-0.0022102	-5.1484	-0.0028896	561.2705856577736	26.11	3.6526	25.946	25.588	29.24	-0.16331					253	91	5	0	0	0	1.1056	1	1420	1420		31.955	1.4512	1	242840000	+		77694	20554	54193	54285	85776	85776					-0.02528615704909498
TDAIRRWQK	9	Unmodified	_TDAIRRWQK_					0	0	0		ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.7388305664062	2	587.327996	1172.64144	-0.9892	-0.00058099	-2.8341	-0.0016646	-3.8233	-0.0022455	587.3262014457238	28.947	0.34028	28.797	28.572	28.912	-0.14952					11	7	2	0	0	0	0.024523	1	1710	1710		15.642	12.712	1	39445			77695	7049	54194	54286	85777	85777					0.0620244372300931
TDANTKAR	8	Unmodified	_TDANTKAR_					0	0	0			REV__nc|ENSG00000091140|P09622-2|DLD	REV__nc|ENSG00000091140|P09622-2|DLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.7370910644531	2	438.730323	875.446094	0.57874	0.00025391	-3.8305	-0.0016806	-3.2518	-0.0014267	438.72809101693656	61.708	0.6486	61.481	61.118	61.766	-0.22663					27	16	3	0	0	0	0.027866	1	7154	7154		66.429	32.914	1	267480	+		77696	20903	54195	54287	85778	85778					0.003388531981727283
TDCDCECSKY	10	Unmodified	_TDCDCECSKY_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.274658203125	2	583.693574	1165.3726	-0.33914	-0.00019795	3.1444	0.0018353	2.8052	0.0016374	583.6954322481005	49.529	0.34068	49.349	49.191	49.532	-0.18071					13	8	2	0	0	0	0.03519	1	4963	4963		20.947	0	1	138100	+		77697	28014	54196	54288	85779	85779					-0.2034756741311412
TDDFSQFLD	9	Unmodified	_TDDFSQFLD_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2805786132812	2	544.232561	1086.45057	-0.9645	-0.00052491	3.5737	0.0019449	2.6092	0.00142	544.2342836849286	62.362	2.8246	62.184	60.791	63.616	-0.17782					114	76	3	0	0	0	0.024436	1	6997	6997		30.504	0	1	1601900	+		77698	20275	54197	54289	85780	85780					-0.08919727169563885
TDDLDKWSV	9	Unmodified	_TDDLDKWSV_					0	0	0			REV__ENSG00000176979|ENST00000512596|TRIM60	REV__ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7926025390625	2	539.756204	1077.49785	-0.48939	-0.00026415	4.3603	0.0023535	3.8709	0.0020894	539.7583763003554	77.75	0.85638	77.75	77.426	78.282	0					52	20	4	0	0	0	0.024539	1	9656	9656		14.865	0	1	1159300	+		77699	27071	54198	54290	85781	85781					-0.03779447898568833
TDDVPIILV	9	Unmodified	_TDDVPIILV_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2879943847656	2	492.784233	983.553913	-0.40566	-0.0001999	-4.1684	-0.0020541	-4.5741	-0.002254	492.78164387666055	75.875	0.33811	75.875	75.732	76.071	0					10	8	2	0	0	0	0.024412	1	9344	9344		31.955	8.9124	1	97170			77700	7587	54199	54291	85782	85782					0.06147805008913565
TDDVQALGEA	10	Unmodified	_TDDVQALGEA_					0	0	0		nc|ENSG00000114248|Q6UY01-4|LRRC31;ENSG00000114248|ENST00000316428|LRRC31;nc|ENSG00000114248|Q6UY01-3|LRRC31	nc|ENSG00000114248|Q6UY01-4|LRRC31	nc|ENSG00000114248|Q6UY01-4|LRRC31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.3100891113281	2	509.738011	1017.46147	-0.49897	-0.00025434	4.1312	0.0021058	3.6322	0.0018515	510.2402121453936	75.791	0.42189	75.546	75.266	75.688	-0.24455					14	11	2	0	0	0	0.03519	1	9271	9271		32.812	0	1	222960			77701	3349	54200	54292	85783	85783					-0.04656324795269029
TDELKRQF	8	Unmodified	_TDELKRQF_					0	0	0			REV__nc|ENSG00000173157|P59510|ADAMTS20	REV__nc|ENSG00000173157|P59510|ADAMTS20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7805786132812	2	518.774731	1035.53491	-1.2291	-0.00063764	0.8269	0.00042897	-0.40222	-0.00020866	518.7751485345988	44.271	0.57896	44.126	43.781	44.359	-0.14471					36	16	3	0	0	0	0.027866	1	4221	4221		37.159	0	1	959920	+		77702	26745	54201	54293	85784	85784					0.018562684378366612
TDELKRQF	8	Unmodified	_TDELKRQF_					0	0	0			REV__nc|ENSG00000173157|P59510|ADAMTS20	REV__nc|ENSG00000173157|P59510|ADAMTS20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7803344726562	2	518.774731	1035.53491	-0.72197	-0.00037454	0.33007	0.00017123	-0.3919	-0.00020331	518.7749938841166	44.088	0.59041	44.124	43.853	44.443	0.0369					30	16	3	0	0	0	0.027866	1	4159	4159		24.203	0	1	1122900	+		77703	26745	54201	54293	85785	85785					0.018562684378366612
TDESGPFMAAF	11	Unmodified	_TDESGPFMAAF_					0	0	0			REV__ENST00000468090.5_1_21:45177528-45177741:+|nuORF	REV__ENST00000468090.5_1_21:45177528-45177741:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.7470092773438	2	586.750064	1171.48558	-1.645	-0.00096518	-3.2607	-0.0019132	-4.9057	-0.0028784	586.7473613039629	61.362	1.0577	61.185	60.635	61.693	-0.1761					72	25	4	0	0	0	0.95124	1	6815	6815		47.657	1.6851	1	2869700	+		77704	33092	54202	54294	85786	85786					-0.09330807633273253
TDFIKLIPL	9	Unmodified	_TDFIKLIPL_					0	0	0			REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2398071289062	2	530.326068	1058.63758	-0.10994	-5.8302E-05	0.55261	0.00029306	0.44267	0.00023476	530.3265757495947	107.34	0.24573	107.34	107.18	107.43	0.0018311					16	6	3	0	0	0	0.024457	1	13707	13707		29.15	13.508	1	82780	+		77705	34088	54203	54295	85787	85787					0.11060961176622186
TDFIKLIPL	9	Unmodified	_TDFIKLIPL_					0	0	0			REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.326068	1058.63758	0.42355	0.00022462	-1.0253	-0.00054374	-0.60173	-0.00031911	530.3253486191206	107.21	0.3632	107.21	106.98	107.35	0	0.040555	-0.00081106	NaN	29.15	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113790	+		77706	34088	54203	54295							0.11060961176622186
TDFIKLIPL	9	Unmodified	_TDFIKLIPL_					0	0	0			REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.326068	1058.63758	-1.676	-0.00088883	1.7099	0.00090681	0.033895	1.7975E-05	530.3268809462564	107.18	0.38251	107.05	106.83	107.21	-0.1346	-0.12244	0.00209	NaN	29.15	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61829	+		77707	34088	54203	54295							0.11060961176622186
TDFIKLIPL	9	Unmodified	_TDFIKLIPL_					0	0	0			REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	REV__ENST00000509793.5_1_4:110884430-110885667:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.326068	1058.63758	0.57477	0.00030481	-0.9471	-0.00050227	-0.37233	-0.00019746	530.325395571939	107.2	0.30243	107.04	106.88	107.18	-0.15772	-0.13076	-0.00072813	NaN	29.15	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70404	+		77708	34088	54203	54295							0.11060961176622186
TDFPVSREW	9	Unmodified	_TDFPVSREW_					0	0	0		ENST00000469172.5_1_10:70091580-70091955:+|nuORF	ENST00000469172.5_1_10:70091580-70091955:+|nuORF	ENST00000469172.5_1_10:70091580-70091955:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.7710571289062	2	568.772188	1135.52982	0.12685	7.2151E-05	-3.4509	-0.0019628	-3.324	-0.0018906	568.7700131819081	32.01	0.72289	31.773	31.45	32.173	-0.23667					48	16	4	0	0	0	0.70186	1	2198	2198		45.952	3.0877	1	963390			77709	14899	54204	54296	85788	85788					-0.03252035424748101
TDGALFYLIP	10	Unmodified	_TDGALFYLIP_					0	0	0			REV__ENSG00000169860|ENST00000305097|P2RY1	REV__ENSG00000169860|ENST00000305097|P2RY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7877197265625	2	555.297507	1108.58046	0.14934	8.2931E-05	2.3846	0.0013242	2.534	0.0014071	555.2986342545416	82.162	1.2622	81.981	80.895	82.157	-0.18079					63	29	3	0	0	0	0.03519	1	9911	9911		44.117	0	1	423640	+		77710	26406	54205	54297	85789	85789					0.03051493900238711
TDGHVHLY	8	Unmodified	_TDGHVHLY_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.22760009765625	2	471.227417	940.44028	-1.445	-0.00068092	1.5606	0.0007354	0.11562	5.4484E-05	471.22800491103754	33.661	0.74899	33.495	33.195	33.944	-0.16565					52	18	4	0	0	0	0.37803	1	2405	2405		100.27	28.895	1	2564900			77711	3730	54206	54298	85790	85790					-0.03232245313495241
TDIHLSISDEA	11	Unmodified	_TDIHLSISDEA_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	600.3012084960938	2	600.790775	1199.567	-0.48527	-0.00029155	-2.9745	-0.001787	-3.4597	-0.0020786	601.2906206325247	61.192	0.68703	60.986	60.695	61.382	-0.20599					34	16	3	0	0	0	0.024732	1	6800	6800		8.6937	0	1	701510			77712	4796	54207	54299	85791	85791					-0.024804086696804006
TDIPSGNVY	9	Unmodified	_TDIPSGNVY_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.2336730957031	2	483.232364	964.450176	0.052915	2.557E-05	-1.4582	-0.00070466	-1.4053	-0.00067909	483.23129174962736	41.764	0.29703	41.534	41.354	41.651	-0.23029					22	7	4	0	0	0	0.31037	1	3695	3695		74.255	5.4682	1	1725300	+		77713	19929	54208	54300	85792	85792					-0.033471020987576594
TDKELSDLL	9	Unmodified	_TDKELSDLL_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000560190.5_1_15:57212111-57565250:+|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7677612304688	2	517.274229	1032.53391	-1.464	-0.0007573	2.2433	0.0011604	0.77932	0.00040312	517.2754667993155	51.622	0.9468	51.709	51.411	52.358	0.087006					45	25	3	0	0	0	0.023635	1	5503	5503		87.754	25.647	1	1781600			77714	18628;1455;18074	54209	54301	85793	85793					0.01894009278316844
TDKELSDLL	9	Unmodified	_TDKELSDLL_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000560190.5_1_15:57212111-57565250:+|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.274229	1032.53391	-0.23901	-0.00012363	0.8827	0.0004566	0.64369	0.00033296	517.2748041976232	51.764	0.61912	51.764	51.466	52.085	0	0.016141	-0.0006862	NaN	87.754	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1557800			77715	18628;1455;18074	54209	54301							0.01894009278316844
TDKELSDLL	9	Unmodified	_TDKELSDLL_					0	0	0		ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3;ENST00000560190.5_1_15:57212111-57565250:+|nuORF;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-4|TCF4	ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.274229	1032.53391	-0.53641	-0.00027747	1.4414	0.00074561	0.90501	0.00046814	517.2749431368092	51.919	0.51012	51.772	51.511	52.021	-0.14735	0.023387	-0.00010818	NaN	87.754	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2065300			77716	18628;1455;18074	54209	54301							0.01894009278316844
TDKGHPPMAGH	11	Unmodified	_TDKGHPPMAGH_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;nc|ENSG00000081842|Q9UN73-3|PCDHA6;ENSG00000081842|ENST00000529310|PCDHA6	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.2639770507812	2	574.26929	1146.52403	-0.15167	-8.7098E-05	-3.0224	-0.0017357	-3.174	-0.0018228	574.2676678651553	99.916	2.0221	99.745	97.899	99.921	-0.17088					102	50	3	0	0	0	0.95882	1	12301	12301		45.972	15.469	1	216300			77717	10397;1717	54210	54302	85794	85794					-0.043374572080892904
TDKLAQLKQQD	11	Unmodified	_TDKLAQLKQQD_					0	0	0			REV__nc|ENSG00000163931|P29401-2|TKT	REV__nc|ENSG00000163931|P29401-2|TKT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	644.349609375	2	644.348791	1286.68303	1.2708	0.00081885	0.18037	0.00011622	1.4512	0.00093507	644.3487776389134	110.32	0.48068	110.31	110.08	110.56	-0.009491					54	18	4	0	0	0	0.99553	1	13931	13931		37.812	0	1	630130	+		77718	36858	54211	54303	85795	85795					0.05115534901051433
TDKLAQLKQQD	11	Unmodified	_TDKLAQLKQQD_					0	0	0			REV__nc|ENSG00000163931|P29401-2|TKT	REV__nc|ENSG00000163931|P29401-2|TKT	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	644.348791	1286.68303	1.2708	0.00081885	0.18037	0.00011622	1.4512	0.00093507	644.3487776389134	110.32	0.48068	110.31	110.08	110.56	-0.009491	0	0	NaN	37.812	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630130	+		77719	36858	54211	54303							0.05115534901051433
TDKQTTKDE	9	Unmodified	_TDKQTTKDE_					0	0	0			REV__ENSG00000155833|ENST00000374798|CYLC2	REV__ENSG00000155833|ENST00000374798|CYLC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.3056030273438	2	533.256568	1064.49858	0.20292	0.00010821	-0.028611	-1.5257E-05	0.17431	9.2954E-05	533.2564113220105	62.856	1.0699	62.91	62.557	63.627	0.054104					55	27	3	0	0	0	0.02435	1	7272	7272		42.396	8.2236	1	1452300	+		77720	25030	54212	54304	85796	85796					-0.031086532495237407
TDLALSVILVF	11	Unmodified	_TDLALSVILVF_					0	0	0		ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	595.801025390625	2	595.855189	1189.69583	0.0088261	5.2591E-06	-3.444	-0.0020521	-3.4351	-0.0020468	595.8533665343612	79.253	0.16449	79.006	78.906	79.07	-0.2465					5	3	2	0	0	0	0.024798	1	9458	9458		8.6937	0.4624	1	38021			77721	2236	54213	54305	85797	85797					0.10856598031205067
TDLCASYVPV	10	Unmodified	_TDLCASYVPV_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2593994140625	2	534.257525	1066.5005	-0.44731	-0.00023898	3.1077	0.0016603	2.6604	0.0014213	534.2592292246243	66.498	1.0608	66.25	65.45	66.511	-0.24839					68	27	4	0	0	0	0.79525	1	7641	7641		60.972	0	1	6256200			77722	18644	54214	54306	85798	85798					-0.030093157652800073
TDLCASYVPV	10	Unmodified	_TDLCASYVPV_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2597045898438	2	534.257525	1066.5005	-0.81306	-0.00043438	2.3081	0.0012331	1.495	0.00079872	534.259466027847	66.477	0.8878	66.232	65.609	66.496	-0.24517					76	23	6	0	0	0	0.79525	2	7617	7617;7644		60.972	7.6205	1	6883800			77723	18644	54214	54306	85799;85800	85799					-0.030093157652800073
TDLFIVIHY	9	Unmodified	_TDLFIVIHY_					0	0	0			REV__nc|ENSG00000160683|P32302-2|CXCR5	REV__nc|ENSG00000160683|P32302-2|CXCR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.7808837890625	2	560.8055	1119.59645	0.18791	0.00010538	-0.24655	-0.00013827	-0.058636	-3.2883E-05	561.306755276962	23.193	0.28082	22.991	22.733	23.014	-0.20193					6	5	2	0	0	0	0.024443	1	896	896		26.796	0	1	15889	+		77724	25333	54215	54307	85801	85801					0.04143200137150416
TDLIQRLT	8	Unmodified	_TDLIQRLT_					0	0	0		ENST00000535290.5_1_12:122865079-122884349:-|nuORF	ENST00000535290.5_1_12:122865079-122884349:-|nuORF	ENST00000535290.5_1_12:122865079-122884349:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.281982421875	2	480.279649	958.544745	0.0044377	2.1313E-06	1.4017	0.00067321	1.4061	0.00067534	480.2803035636772	83.17	3.659	83.17	81.299	84.958	0					156	86	3	0	0	0	0.027866	1	10133	10133		35.618	0	1	579590			77725	16346	54216	54308	85802	85802					0.06381456443239131
TDLKYFIA	8	Unmodified	_TDLKYFIA_					0	0	0		ENST00000558202.1_1_15:35240356-35256599:-|nuORF	ENST00000558202.1_1_15:35240356-35256599:-|nuORF	ENST00000558202.1_1_15:35240356-35256599:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.26153564453125	2	485.765843	969.517133	-1.5102	-0.00073358	-3.7563	-0.0018247	-5.2665	-0.0025583	485.7637091573112	38.011	0.44856	38.011	37.836	38.284	0					20	13	2	0	0	0	0.027866	1	3195	3195		35.201	0	1	985930			77726	16746	54217	54309	85803	85803					0.03115553182988151
TDLLAAHPK	9	Unmodified	_TDLLAAHPK_					0	0	0			REV__ENST00000545710.1_1_12:9659830-9660388:-|nuORF	REV__ENST00000545710.1_1_12:9659830-9660388:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2367858886719	2	483.274367	964.53418	0.004066	1.965E-06	-1.917	-0.00092643	-1.9129	-0.00092447	483.27311979043185	41.275	0.38744	41.139	40.985	41.372	-0.13553					13	9	2	0	0	0	0.024021	1	3665	3665		49.442	18.938	1	102850	+		77727	34828	54218	54310	85804	85804					0.05049473788801606
TDLLQKII	8	Unmodified	_TDLLQKII_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2948303222656	2	472.294768	942.574983	0.91524	0.00043226	-0.55105	-0.00026026	0.36419	0.00017201	472.294046915023	55.133	0.84678	55.133	54.689	55.536	0					62	23	5	0	0	0	0.37125	1	6082	6082		101.21	0	1	3525900	+		77728	28157	54219	54311	85805	85805					0.10139815108436778
TDLLQKII	8	Unmodified	_TDLLQKII_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2950439453125	2	472.294768	942.574983	-0.26182	-0.00012365	-2.3004	-0.0010865	-2.5622	-0.0012101	472.295419182812	54.997	1.1824	55.095	54.525	55.707	0.098015					76	32	4	0	0	0	0.59392	1	5984	5984		76.847	0	1	3588300	+		77729	28157	54219	54311	85806	85806					0.10139815108436778
TDLPHGVIVS	10	Unmodified	_TDLPHGVIVS_					0	0	0			REV__nc|ENSG00000145832|Q6ZT89-3|SLC25A48	REV__nc|ENSG00000145832|Q6ZT89-3|SLC25A48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2982177734375	2	519.284931	1036.55531	-0.48721	-0.000253	-0.066525	-3.4545E-05	-0.55374	-0.00028755	519.2843252602568	60.406	0.56074	60.23	59.998	60.559	-0.1761					29	13	3	0	0	0	0.03519	1	6714	6714		27.882	0	1	307490	+		77730	24435	54220	54312	85807	85807					0.03849439097666618
TDLQSRGRR	9	Unmodified	_TDLQSRGRR_					0	0	0		ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3165283203125	2	544.799603	1087.58465	0.32474	0.00017692	-1.4541	-0.00079218	-1.1293	-0.00061526	545.2991304349654	87.32	0.25198	87.183	87.094	87.346	-0.13613					6	5	2	0	0	0	0.024511	1	10642	10642		25.574	0	1	101300			77731	6872	54221	54313	85808	85808					0.04436396166511258
TDLSIRRIS	9	Unmodified	_TDLSIRRIS_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8095703125	2	530.809105	1059.60366	-0.638	-0.00033866	1.4699	0.00078023	0.83188	0.00044157	530.8099182997815	17.645	1.0932	17.439	17.216	18.309	-0.20669					51	21	5	0	0	0	0.96322	1	227	227		27.882	1.0861	1	1940000	+		77732	23462	54222	54314	85809	85809					0.0762393273755606
TDLSMQNSEGK	11	Unmodified	_TDLSMQNSEGK_					0	0	0			REV__ENST00000442955.2_1_9:6669055-6669223:-|nuORF	REV__ENST00000442955.2_1_9:6669055-6669223:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.5111083984375	3	403.852049	1208.53432	-0.53211	-0.00021489	2.0293	0.00081954	1.4972	0.00060465	403.8532493018408	32.369	0.37568	32.211	31.948	32.323	-0.15772					18	8	3	0	0	0	0.024747	1	2182	2182		8.0344	0	1	70279	+		77733	32573	54223	54315	85810	85810					-0.06160939064170634
TDLTAEHPLN	10	Unmodified	_TDLTAEHPLN_					0	0	0			REV__CYP2E1|p.R374L|1|0.16|ENSG00000130649|chr10:133537216-133537216|G/T|missense_variant	REV__CYP2E1|p.R374L|1|0.16|ENSG00000130649|chr10:133537216-133537216|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2905883789062	2	555.774928	1109.5353	-0.73811	-0.00041023	-0.93097	-0.00051741	-1.6691	-0.00092763	555.7744941755797	60.537	1.0962	60.361	59.777	60.874	-0.1761					40	27	2	0	0	0	0.03519	1	6791	6791		35.618	7.364	1	117400	+		77734	19643	54224	54316	85811	85811					-0.015083566329394671
TDLVFTVLL	9	Unmodified	_TDLVFTVLL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;ENST00000380393.7_1_20:2844875-2903853:+|nuORF	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2690734863281	2	510.802426	1019.5903	-0.9284	-0.00047423	-1.9306	-0.00098616	-2.859	-0.0014604	510.80115061471366	44.728	0.69637	44.728	44.451	45.147	0					42	19	3	0	0	0	0.024506	1	4343	4343		30.504	0	1	710420			77735	10587	54225	54317	85812	85812					0.08128681905623125
TDLVFTVLL	9	Unmodified	_TDLVFTVLL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;ENST00000380393.7_1_20:2844875-2903853:+|nuORF	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.802426	1019.5903	-0.9847	-0.00050299	-1.9479	-0.00099501	-2.9326	-0.001498	510.8011993986043	44.95	0.55668	44.801	44.523	45.079	-0.1488	0.0083923	0.00018062	NaN	29.15	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736930			77736	10587	54225	54317							0.08128681905623125
TDLVFTVLL	9	Unmodified	_TDLVFTVLL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16;ENST00000380443.5_1_20:2843179-2847217:+|nuORF;ENST00000380393.7_1_20:2844875-2903853:+|nuORF	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.802426	1019.5903	-0.44605	-0.00022784	-2.325	-0.0011876	-2.7711	-0.0014155	510.8009856606292	44.813	0.59485	44.849	44.578	45.173	0.0369	0.056698	-0.00020464	NaN	29.15	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604670			77737	10587	54225	54317							0.08128681905623125
TDMENITCY	9	Carbamidomethyl (C),Oxidation (M)	_TDM(Oxidation (M))ENITC(Carbamidomethyl (C))Y_	TDMENITC(1)Y	TDM(1)ENITCY	TDMENITC(66)Y	TDM(66)ENITCY	0	1	1		ENST00000313334.12_1_1:52552448-52552523:+|nuORF	ENST00000313334.12_1_1:52552448-52552523:+|nuORF	ENST00000313334.12_1_1:52552448-52552523:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.7233276367188	2	581.723189	1161.43183	-0.24616	-0.0001432	-0.39974	-0.00023254	-0.6459	-0.00037573	581.7229804533407	37.681	0.85903	37.488	37.229	38.088	-0.193					58	23	4	0	0	0	0.40179	1	3035	3035		65.803	7.0212	1	4659900			77738	12097	54226	54318	85813	85813	167	473			-0.14243348127274658
TDMLLLGPH	9	Unmodified	_TDMLLLGPH_					0	0	0			REV__ENSG00000173599|ENST00000393960|PC	REV__ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.77435302734375	2	498.762778	995.511002	0.47263	0.00023573	0.016583	8.2708E-06	0.48921	0.000244	498.7626866988793	100.82	0.68661	100.7	100.55	101.24	-0.12576					33	18	2	0	0	0	0.024183	1	12534	12534		50.025	4.0726	1	341630	+		77739	26789	54227	54319	85814	85814					0.01306711679842465
TDNRTVQPI	9	Unmodified	_TDNRTVQPI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.2793579101562	2	522.277638	1042.54072	-0.37314	-0.00019488	3.6939	0.0019292	3.3208	0.0017344	522.2795217951365	59.951	1.1876	59.751	59.393	60.58	-0.20016					91	30	5	0	0	0	0.80003	1	6872	6872		39.253	0.49923	1	9775200	+		77740	25017	54228	54320	85815	85815					0.021153669495106442
TDPCSSTCVSY	11	Unmodified	_TDPCSSTCVSY_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.723388671875	2	581.723189	1161.43183	-1.531	-0.0008906	1.4094	0.00081987	-0.12159	-7.0734E-05	581.7238498317175	37.663	0.87483	37.445	37.144	38.019	-0.21848					59	23	4	0	0	0	0.6558	1	3034	3034		66.429	3.123	1	3609500	+		77741	21825	54229	54321	85816	85816					-0.1424334812725192
TDPDQVLSLV	10	Unmodified	_TDPDQVLSLV_					0	0	0			REV__CON__Q0VCM5	REV__CON__Q0VCM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2462768554688	2	543.787504	1085.56045	-0.45877	-0.00024947	-2.8391	-0.0015438	-3.2978	-0.0017933	543.7860584220103	61.303	0.53853	61.374	61.131	61.67	0.071125					20	13	2	0	0	0	0.03519	1	7038	7038		35.152	15.155	1	234610	+	+	77742	19566	54230	54322	85817	85817					0.021096981696246075
TDPDQVLSLV	10	Unmodified	_TDPDQVLSLV_					0	0	0			REV__CON__Q0VCM5	REV__CON__Q0VCM5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.787504	1085.56045	-0.31431	-0.00017092	-2.4881	-0.001353	-2.8024	-0.0015239	543.7858238977389	61.413	0.53545	61.413	61.108	61.643	0	0.0059875	0.00030148	NaN	21.686	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240380	+	+	77743	19566	54230	54322							0.021096981696246075
TDPDQVLSLV	10	Unmodified	_TDPDQVLSLV_					0	0	0			REV__CON__Q0VCM5	REV__CON__Q0VCM5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.787504	1085.56045	-0.29238	-0.00015899	-2.9311	-0.0015939	-3.2235	-0.0017529	543.7858043996081	61.661	0.65025	61.435	61.153	61.803	-0.22663	0.027145	-0.0001803	NaN	21.686	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159320	+	+	77744	19566	54230	54322							0.021096981696246075
TDPFWQAL	8	Unmodified	_TDPFWQAL_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7583923339844	2	489.239993	976.465432	-0.96064	-0.00046998	-0.0058141	-2.8445E-06	-0.96646	-0.00047283	489.2399656718211	43.853	1.2584	43.853	43.261	44.519	0					58	35	2	0	0	0	0.027866	1	4045	4045		37.159	0	1	461980	+		77745	21230	54231	54323	85818	85818					-0.023741905108977335
TDPLPAGLPL	10	Unmodified	_TDPLPAGLPL_					0	0	0		ENST00000332118.10_1_11:126133397-126133748:-|nuORF	ENST00000332118.10_1_11:126133397-126133748:-|nuORF	ENST00000332118.10_1_11:126133397-126133748:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2565612792969	2	497.2844	992.554247	0.068098	3.3864E-05	0.31076	0.00015453	0.37886	0.0001884	497.2844152838538	78.901	0.87307	78.901	78.616	79.489	0					45	20	4	0	0	0	0.03519	1	9857	9857		31.955	11.958	1	722080			77746	12350	54232	54324	85819	85819					0.057672247287769096
TDPLQSLLAR	10	Unmodified	_TDPLQSLLAR_					0	0	0			REV__nc|ENSG00000215912|A8MYJ7|TTC34	REV__nc|ENSG00000215912|A8MYJ7|TTC34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	558.27392578125	2	557.316763	1112.61897	1.2801	0.00071344	2.7444	0.0015295	4.0246	0.002243	557.3178867260668	96.771	0.66167	96.771	96.397	97.058	-3.0518E-05					20	14	2	0	0	0	0.03519	1	12218	12218		30.318	9.3708	1	79243	+		77747	28818	54233	54325	85820	85820					0.06716799534751772
TDPRRDWL	8	Unmodified	_TDPRRDWL_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3421630859375	2	529.772522	1057.53049	-1.1417	-0.00060486	3.3349	0.0017667	2.1932	0.0011619	529.7741257733186	83.996	0.43493	83.996	83.823	84.258	0					18	9	3	0	0	0	0.027866	1	10517	10517		39.253	0	1	111940	+		77748	23629	54234	54326	85821	85821					0.004028040149478329
TDPRRDWL	8	Unmodified	_TDPRRDWL_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3419189453125	2	529.772522	1057.53049	-0.7344	-0.00038907	3.0689	0.0016258	2.3345	0.0012368	529.774009124247	83.895	0.43507	83.921	83.727	84.162	0.026558					24	9	3	0	0	0	0.027866	1	10430	10430		52.937	18.764	1	183290	+		77749	23629	54234	54326	85822	85822					0.004028040149478329
TDPVSYKV	8	Unmodified	_TDPVSYKV_					0	0	0			REV__nc|ENSG00000146521|Q9Y6Z2|LINC01558	REV__nc|ENSG00000146521|Q9Y6Z2|LINC01558	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.73992919921875	2	454.739825	907.465098	1.5935	0.00072461	-0.6842	-0.00031113	0.90926	0.00041348	454.7394423273308	110.12	0.49171	110.12	110.02	110.51	0					25	12	3	0	0	0	1.0338	1	14004	14004		31.955	0	1	188820	+		77750	36758	54235	54327	85823	85823					0.007663897692395949
TDQHLKQLN	9	Unmodified	_TDQHLKQLN_					0	0	0			REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	REV__nc|ENSG00000166105|Q8NCI6-4|GLB1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.307861328125	2	548.790912	1095.56727	-0.48448	-0.00026588	-2.0519	-0.0011261	-2.5364	-0.0013919	549.2898643240352	101.48	0.2226	101.48	101.37	101.6	0					6	4	2	0	0	0	0.023837	1	13003	13003		45.972	0	1	17835	+		77751	25967	54236	54328	85824	85824					0.023310558408638826
TDQNKIVTY	9	Unmodified	_TDQNKIVTY_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.26953125	2	541.279846	1080.54514	-0.60962	-0.00032998	1.9077	0.0010326	1.298	0.00070261	541.2806642875986	37.134	0.7091	36.924	36.645	37.354	-0.2092					44	17	4	0	0	0	0.024477	1	3005	3005		20.947	0	1	684810			77752	1615	54237	54329	85825	85825					0.008088313724556428
TDRERLLL	8	Unmodified	_TDRERLLL_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1;ENST00000561370.5_1_14:68048786-68054020:+|nuORF	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.29876708984375	2	508.298373	1014.58219	-0.53747	-0.00027319	0.1426	7.2485E-05	-0.39486	-0.00020071	508.29834161726615	25.628	0.46641	25.457	25.241	25.708	-0.17151					30	10	4	0	0	0	0.71833	1	1212	1212		65.803	0	1	498060			77753	1176	54238	54330	85826	85826					0.07548547708859132
TDRERLLL	8	Unmodified	_TDRERLLL_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1;ENST00000561370.5_1_14:68048786-68054020:+|nuORF	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.298373	1014.58219	0.13399	6.8105E-05	-2.4425	-0.0012415	-2.3085	-0.0011734	508.29723255544843	25.82	0.34157	25.9	25.581	25.922	0.08009	0.31792	-0.0025802	NaN	65.803	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64632			77754	1176	54238	54330							0.07548547708859132
TDRERLLL	8	Unmodified	_TDRERLLL_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1;ENST00000561370.5_1_14:68048786-68054020:+|nuORF	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.298373	1014.58219	-0.61376	-0.00031197	0.21288	0.0001082	-0.40088	-0.00020377	508.2983909062972	25.808	0.57238	25.581	25.352	25.925	-0.22683	-0.0018527	0.00011921	NaN	65.803	30	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631230			77755	1176	54238	54330							0.07548547708859132
TDRERLLL	8	Unmodified	_TDRERLLL_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1;ENST00000561370.5_1_14:68048786-68054020:+|nuORF	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.298373	1014.58219	-0.34709	-0.00017643	-0.022507	-1.1441E-05	-0.3696	-0.00018787	508.2982949827386	25.563	0.82143	25.392	25.163	25.985	-0.17078	-0.19049	-0.00012008	NaN	65.803	32	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646700			77756	1176	54238	54330							0.07548547708859132
TDRGGVIRDV	10	Unmodified	_TDRGGVIRDV_					0	0	0			REV__ENSG00000105707|ENST00000672452|HPN	REV__ENSG00000105707|ENST00000672452|HPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8297729492188	2	544.296362	1086.57817	-1.197	-0.0006515	-3.6514	-0.0019875	-4.8484	-0.002639	544.7959427233145	54.895	1.224	54.993	54.558	55.782	0.098015					66	29	4	0	0	0	0.03519	1	5893	5893		36.447	7.2972	1	5757500	+		77757	21558	54239	54331	85827	85827					0.038344582151466966
TDRHRSVSTR	10	Unmodified	_TDRHRSVSTR_					0	0	0			REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	608.2857055664062	2	607.821067	1213.62758	-0.97015	-0.00058968	0.31854	0.00019362	-0.65161	-0.00039606	607.8212954516194	37.56	0.43497	37.351	37.037	37.472	-0.2092					16	10	2	0	0	0	0.03519	1	3025	3025		42.864	0	1	42134	+		77758	27877	54240	54332	85828	85828					0.02931166223947912
TDRISKTLR	9	Unmodified	_TDRISKTLR_					0	0	0		ENST00000357430.7_1_2:223806358-223806715:+|nuORF	ENST00000357430.7_1_2:223806358-223806715:+|nuORF	ENST00000357430.7_1_2:223806358-223806715:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3009643554688	2	545.32238	1088.63021	-1.1526	-0.00062853	-0.85382	-0.00046561	-2.0064	-0.0010941	545.3222166371504	68.927	0.20315	68.666	68.586	68.789	-0.26165					6	4	2	0	0	0	0.024495	1	7988	7988		14.137	0	1	35406			77759	12693	54241	54333	85829	85829					0.08943621628895926
TDRISLYQ	8	Unmodified	_TDRISLYQ_					0	0	0		nc|ENSG00000120729|Q9UBF9-2|MYOT;nc|ENSG00000120729|Q9UBF9|MYOT;ENSG00000120729|ENST00000239926|MYOT	nc|ENSG00000120729|Q9UBF9-2|MYOT	nc|ENSG00000120729|Q9UBF9-2|MYOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2722473144531	2	498.261456	994.50836	0.038657	1.9261E-05	-1.8183	-0.00090599	-1.7797	-0.00088673	498.2603628391169	89.502	0.79436	89.502	89.102	89.896	0					51	18	4	0	0	0	0.027866	1	11308	11308		30.504	0	1	529040			77760	3836	54242	54334	85830	85830					0.010885795465242154
TDRIVAVK	8	Unmodified	_TDRIVAVK_					0	0	0			REV__ENSG00000175764|ENST00000321582|TTLL11	REV__ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2373962402344	2	451.276909	900.539266	-0.49763	-0.00022457	0.5858	0.00026436	0.088166	3.9787E-05	451.27698121941427	26.983	0.64133	26.826	26.544	27.185	-0.15664					34	14	3	0	0	0	0.027866	1	1445	1445		21.96	0	1	434740	+		77761	26970	54243	54335	85831	85831					0.08501777651417797
TDRLSYVG	8	Unmodified	_TDRLSYVG_					0	0	0		ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.7347717285156	2	455.735074	909.455596	0.37315	0.00017006	-0.24621	-0.00011221	0.12694	5.7849E-05	455.73487218478476	32.464	1.0022	32.271	31.942	32.944	-0.19261					40	23	2	0	0	0	1.043	1	2221	2221		30.504	1.3541	1	1098200			77762	5082	54244	54336	85832	85832					-0.0027537851627812415
TDRNTSAPPE	10	Unmodified	_TDRNTSAPPE_					0	0	0			REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8297729492188	2	544.25436	1086.49417	-0.096094	-5.23E-05	-0.79102	-0.00043052	-0.88712	-0.00048282	544.2536772304442	54.361	0.40208	54.459	54.294	54.696	0.098015					23	11	3	0	0	0	0.03519	1	5893	5893		19.104	8.238	1	149370	+		77763	21313	54245	54337	85833	85833					-0.04562117672435306
TDRQSQVGR	9	Unmodified	_TDRQSQVGR_					0	0	0			REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3037719726562	2	523.770511	1045.52647	0.13521	7.0818E-05	-0.82562	-0.00043243	-0.69041	-0.00036162	524.2730396871356	85.499	0.58498	85.303	84.967	85.552	-0.19508					22	13	2	0	0	0	0.024405	1	10364	10364		14.865	0	1	83974	+		77764	27778	54246	54338	85834	85834					0.005527145212454343
TDRRLRGQV	9	Unmodified	_TDRRLRGQV_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.27978515625	2	550.817796	1099.62104	0.26803	0.00014764	1.3353	0.00073551	1.6033	0.00088315	550.8185733929141	72.615	0.97357	72.333	72.025	72.999	-0.28124					51	23	3	0	0	0	0.024457	1	8879	8879		21.96	0	1	725000			77765	4892	54247	54339	85835	85835					0.07521273063230183
TDRSVKSSM	9	Oxidation (M)	_TDRSVKSSM(Oxidation (M))_		TDRSVKSSM(1)		TDRSVKSSM(55)	0	0	1			REV__ENSG00000198755|ENST00000322203|RPL10A	REV__ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.7474975585938	2	513.747856	1025.48116	2.8691	0.001474	-2.8873	-0.0014833	-0.018242	-9.3718E-06	513.7462210818547	18.853	2.3512	18.916	18.452	20.803	0.063307					95	47	3	0	0	0	0.56934	1	304	304		54.776	12.38	1	180820	+		77766	28465	54248	54340	85836	85836		843			-0.03056272056164744
TDSHKNQLQ	9	Unmodified	_TDSHKNQLQ_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7551879882812	2	535.764894	1069.51524	-1.166	-0.00062473	-2.2359	-0.0011979	-3.402	-0.0018227	535.7635728764169	38.322	0.39019	38.101	37.866	38.256	-0.22149					20	11	2	0	0	0	0.024405	1	3171	3171		35.618	0	1	572530	+		77767	25919	54249	54341	85837	85837					-0.016741075728987198
TDSLKGRRG	9	Unmodified	_TDSLKGRRG_					0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1;ENST00000564201.1_1_12:52449860-52450525:+|nuORF;ENST00000550339.1_1_12:52449819-52450525:+|nuORF;nc|ENSG00000119508|Q92570-2|NR4A3;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3;nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2;NR4A2|p.M496Ifs*94|1|0.28|ENSG00000153234|chr2:156326202-156326203|-/A|frameshift_variant	ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.29779052734375	2	495.277972	988.541391	-0.068284	-3.3819E-05	-4.4271	-0.0021927	-4.4954	-0.0022265	495.27540594882794	54.73	0.2081	54.73	54.623	54.831	0					8	5	2	0	0	0	0.024457	1	5996	5996		37.159	6.6555	1	241610			77768	6333;3972	54250	54342	85838	85838					0.046662063892426886
TDSLLHVLL	9	Unmodified	_TDSLLHVLL_					0	0	0			REV__ENSG00000186306|ENST00000334438|OR10T2	REV__ENSG00000186306|ENST00000334438|OR10T2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7957458496094	2	505.797675	1009.5808	0.21873	0.00011063	-2.8258	-0.0014293	-2.6071	-0.0013187	505.79609201865884	21.091	0.63831	21.162	20.86	21.499	0.071487					28	12	3	0	0	0	0.88411	1	569	569		33.516	1.9858	1	223920	+		77769	27844	54251	54343	85839	85839					0.07638913620110088
TDSLVVVTVYG	11	Unmodified	_TDSLVVVTVYG_					0	0	0		nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2;ENSG00000147166|ENST00000373829|ITGB1BP2;ENST00000475413.1_1_X:70523662-70524496:+|nuORF;ENST00000465388.1_1_X:70523662-70524276:+|nuORF	nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	nc|ENSG00000147166|Q9UKP3-2|ITGB1BP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7783203125	2	576.810979	1151.6074	-0.58538	-0.00033765	1.6165	0.00093239	1.0311	0.00059474	576.8119273995161	46.417	0.67999	46.156	45.854	46.534	-0.26118					40	17	3	0	0	0	0.024768	1	4512	4512		24.519	0	1	485290			77770	5943	54252	54344	85840	85840					0.037665577207462775
TDSTVRVIW	9	Unmodified	_TDSTVRVIW_					0	0	0		ENSG00000079931|ENST00000367963|MOXD1;nc|ENSG00000079931|Q6UVY6-2|MOXD1	ENSG00000079931|ENST00000367963|MOXD1	ENSG00000079931|ENST00000367963|MOXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.8262329101562	2	538.790381	1075.56621	-0.40655	-0.00021904	-0.021651	-1.1665E-05	-0.4282	-0.00023071	538.7910704080638	54.891	0.60892	54.661	54.423	55.032	-0.23087					35	16	3	0	0	0	0.024294	1	5890	5890		37.159	0	1	519640			77771	1678	54253	54345	85841	85841					0.03144841471953441
TDTAVVAHMD	10	Unmodified	_TDTAVVAHMD_					0	0	0		ENSG00000115474|ENST00000233826|KCNJ13;KCNJ13|p.C234Dfs*9|1|0.08|ENSG00000115474|chr2:232768575-232768576|-/CC|frameshift_variant	ENSG00000115474|ENST00000233826|KCNJ13	ENSG00000115474|ENST00000233826|KCNJ13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2411499023438	2	530.242406	1058.47026	-1.6646	-0.00088263	-1.1604	-0.0006153	-2.825	-0.0014979	530.2417220414414	110.58	0.98775	110.44	109.89	110.88	-0.13983					75	39	2	0	0	0	1.1267	1	13552	13552		29.15	1.2673	1	68316			77772	3452	54254	54346	85842	85842					-0.05663674430456922
TDTAYRVVA	9	Unmodified	_TDTAYRVVA_					0	0	0		ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	ENSG00000124608|ENST00000244571|AARS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2717590332031	2	498.261456	994.50836	0.33567	0.00016725	-2.2171	-0.0011047	-1.8814	-0.00093743	498.2602231382165	89.493	0.71712	89.472	89.157	89.874	-0.021645					42	16	3	0	0	0	0.024261	1	11256	11256		54.776	6.8607	1	582950			77773	4063	54255	54347	85843	85843					0.010885795465242154
TDTKKKKIN	9	Unmodified	_TDTKKKKIN_					0	0	0		ENSG00000261649|ENST00000567390|GOLGA6L7;ENST00000559740.5_1_15:23097072-23099206:+|nuORF;ENST00000560434.1_1_15:23097072-23098551:+|nuORF;nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;ENSG00000174450|ENST00000567107|GOLGA6L2	ENSG00000261649|ENST00000567390|GOLGA6L7	ENSG00000261649|ENST00000567390|GOLGA6L7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.326904296875	2	538.327131	1074.63971	-0.74783	-0.00040258	0.59758	0.00032169	-0.15025	-8.0886E-05	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	0.96906	1	12457	12457		26.693	4.733	1	21993000			77774	10954	54256	54348	85844	85844					0.10537389914429696
TDTNLLSW	8	Unmodified	_TDTNLLSW_					0	0	0			REV__ENSG00000095464|ENST00000371447|PDE6C	REV__ENSG00000095464|ENST00000371447|PDE6C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.2876281738281	2	475.234907	948.455261	0.92022	0.00043732	-1.019	-0.00048426	-0.098758	-4.6933E-05	475.23433139074433	51.539	1.174	51.355	51.019	52.193	-0.18404					49	30	3	0	0	0	0.027866	1	5365	5365		68.787	7.8149	1	248480	+		77775	20965	54257	54349	85845	85845					-0.021027982361488284
TDTRAEIDL	9	Unmodified	_TDTRAEIDL_					0	0	0		RNF216-MTHFD1L|2|fusion;RNF216-MTHFD1L|1|fusion;ENSG00000120254|ENST00000367321|MTHFD1L	RNF216-MTHFD1L|2|fusion	RNF216-MTHFD1L|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7677612304688	2	517.261653	1032.50875	-1.2572	-0.00065031	-1.22	-0.00063105	-2.4772	-0.0012814	517.2610079763008	51.911	0.60186	52.003	51.72	52.321	0.091942					24	15	2	0	0	0	0.023454	1	5503	5503		82.241	10.945	1	250760			77776	37841	54258	54350	85846	85846					-0.006200455242833414
TDTSLDTY	8	Unmodified	_TDTSLDTY_					0	0	0			REV__ENSG00000128917|ENST00000249749|DLL4	REV__ENSG00000128917|ENST00000249749|DLL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.6563415527344	2	458.20073	914.386907	0.55551	0.00025453	0.50812	0.00023282	1.0636	0.00048735	458.2010319783093	59.636	0.42319	59.46	59.281	59.704	-0.1761					13	10	2	0	0	0	0.027866	1	6593	6593		26.796	0	1	109300	+		77777	23018	54259	54351	85847	85847					-0.07371087606668425
TDTWPCTPAH	10	Unmodified	_TDTWPCTPAH_					0	0	0			REV__ENST00000422506.5_1_22:23981019-24037474:-|nuORF	REV__ENST00000422506.5_1_22:23981019-24037474:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7216186523438	2	564.742573	1127.47059	0.12568	7.0975E-05	-1.307	-0.00073812	-1.1813	-0.00066715	564.7421690262474	49.561	0.22544	49.38	49.307	49.532	-0.18071					8	5	2	0	0	0	0.03519	1	4971	4971		35.618	6.4687	1	208800	+		77778	32203	54260	54352	85848	85848					-0.08804254710616988
TDVAGLFLAN	10	Unmodified	_TDVAGLFLAN_					0	0	0		ENSG00000177519|ENST00000325926|RPRM	ENSG00000177519|ENST00000325926|RPRM	ENSG00000177519|ENST00000325926|RPRM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.3155822753906	2	510.771657	1019.52876	0.37347	0.00019076	-1.2688	-0.00064806	-0.89531	-0.0004573	510.77065805835986	74.234	0.13216	74.051	73.961	74.094	-0.18279					4	2	2	0	0	0	0.03519	1	8728	8728		19.997	6.2214	1	50639			77779	8748	54261	54353	85849	85849					0.01977750206322071
TDVETQVLN	9	Unmodified	_TDVETQVLN_					0	0	0		nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.78729248046875	2	509.756204	1017.49785	-1.9109	-0.00097407	2.2675	0.0011559	0.35664	0.0001818	509.757244065846	60.474	0.638	60.553	60.28	60.918	0.078888					25	16	2	0	0	0	0.024292	1	6840	6840		40.778	0	1	599040			77780	6390	54262	54354	85850	85850					-0.010194478985681599
TDVKDDLSDP	10	Unmodified	_TDVKDDLSDP_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.8036499023438	2	552.756401	1103.49825	-0.70033	-0.00038711	0.29356	0.00016227	-0.40677	-0.00022484	552.7570282982844	57.392	0.88904	57.225	56.676	57.565	-0.1672					49	23	3	0	0	0	0.03519	1	6296	6296		20.837	0	1	533500			77781	7418	54263	54355	85851	85851					-0.049360729693717076
TDVRADPDL	9	Unmodified	_TDVRADPDL_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2496032714844	2	501.248546	1000.48254	-0.045881	-2.2998E-05	0.09135	4.5789E-05	0.045468	2.2791E-05	501.2485766471276	104.85	0.58165	104.85	104.54	105.13	0.00096893					47	18	3	0	0	0	0.85329	1	13425	13425		35.618	1.4457	1	312450	+		77782	20714	54264	54356	85852	85852					-0.017683146957665485
TDYIPLLDV	9	Unmodified	_TDYIPLLDV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-7|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3153686523438	2	524.78169	1047.54883	-0.2463	-0.00012926	2.382	0.00125	2.1357	0.0011208	524.7829126223713	73.358	0.59236	73.168	72.927	73.519	-0.19026					26	14	2	0	0	0	0.024477	1	8633	8633		35.618	12.576	1	258100			77783	1110	54265	54357	85853	85853					0.026955011462860057
TDYMELLAAE	10	Unmodified	_TDYMELLAAE_					0	0	0		TMCO3|p.E152D|1|0.29|ENSG00000150403|chr13:113498353-113498353|A/C|missense_variant	TMCO3|p.E152D|1|0.29|ENSG00000150403|chr13:113498353-113498353|A/C|missense_variant	TMCO3|p.E152D|1|0.29|ENSG00000150403|chr13:113498353-113498353|A/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.30615234375	2	578.265547	1154.51654	-1.6165	-0.00093474	-3.3521	-0.0019384	-4.9686	-0.0028732	578.2638202652607	75.959	0.26914	75.959	75.881	76.15	0					8	6	2	0	0	0	0.03519	1	9370	9370		32.812	0	1	207950			77784	38082	54266	54358	85854	85854					-0.054536543190124576
TEAIFSED	8	Unmodified	_TEAIFSED_					0	0	0		nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	nc|ENSG00000114439|Q8WY36-2|BBX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.26129150390625	2	456.203273	910.391992	-0.10081	-4.5991E-05	1.8824	0.00085874	1.7816	0.00081275	456.20399344375716	29.547	0.53766	29.398	29.171	29.709	-0.14952					21	12	2	0	0	0	0.027866	1	1767	1767		31.955	12.595	1	177820			77785	3363	54267	54359	85855	85855					-0.06678783744041539
TEAISIMRR	9	Unmodified	_TEAISIMRR_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3270874023438	2	538.797683	1075.58081	-0.77911	-0.00041978	-1.3991	-0.00075383	-2.1782	-0.0011736	538.7966665887609	99.814	0.15469	99.643	99.571	99.726	-0.17088					6	4	2	0	0	0	0.024523	1	12361	12361		21.96	0	1	33270			77786	1296	54268	54360	85856	85856					0.04604590348435522
TEALCGGRGP	10	Unmodified	_TEALCGGRGP_					0	0	0			REV__SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|74|2|anti-sense	REV__SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|74|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7308349609375	2	480.732009	959.449465	-0.13761	-6.6153E-05	0.29811	0.00014331	0.1605	7.7158E-05	480.7321315524798	31.624	6.3562	31.624	29.773	36.129	0					309	163	4	0	0	0	0.79525	1	2058	2058		60.972	13.056	1	7088900	+		77787	37628	54269	54361	85857	85857					-0.031882200194331745
TEALCGGRGP	10	Unmodified	_TEALCGGRGP_					0	0	0			REV__SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|74|2|anti-sense	REV__SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|74|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7311706542969	2	480.732009	959.449465	-0.37385	-0.00017972	0.2593	0.00012465	-0.11455	-5.5068E-05	480.7321405153963	31.237	3.3748	31.306	29.359	32.734	0.068962					202	83	4	0	0	0	0.85955	1	2076	2076		56.721	5.3856	1	10183000	+		77788	37628	54269	54361	85858	85858					-0.031882200194331745
TEALMTVFHPQ	11	Unmodified	_TEALMTVFHPQ_					0	0	0		nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	nc|ENSG00000133138|Q0IIM8-2|TBC1D8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.7751159667969	3	425.213029	1272.61726	0.14767	6.279E-05	4.1311	0.0017566	4.2788	0.0018194	425.2144569294585	42.1	0.22326	41.977	41.853	42.076	-0.12299					7	5	2	0	0	0	0.024723	1	3772	3772		28.577	8.2617	1	62904			77789	4690	54270	54362	85859	85859					-0.008145775455204785
TEARKEGRA	9	Unmodified	_TEARKEGRA_					0	0	0		ENST00000478324.5_1_11:532391-532556:-|nuORF	ENST00000478324.5_1_11:532391-532556:-|nuORF	ENST00000478324.5_1_11:532391-532556:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3019714355469	2	509.275429	1016.53631	-0.4092	-0.00020839	-1.6577	-0.0008442	-2.0668	-0.0010526	509.2739528428218	57.181	1.0349	57.277	56.394	57.429	0.095306					40	28	2	0	0	0	0.023817	1	6319	6319		51.335	5.3632	1	207430			77790	15141	54271	54363	85860	85860					0.02869902526617807
TEARKEGRA	9	Unmodified	_TEARKEGRA_					0	0	0		ENST00000478324.5_1_11:532391-532556:-|nuORF	ENST00000478324.5_1_11:532391-532556:-|nuORF	ENST00000478324.5_1_11:532391-532556:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.275429	1016.53631	0.23789	0.00012115	-2.5076	-0.001277	-2.2697	-0.0011559	509.2735467349539	57.479	0.70002	57.304	56.834	57.534	-0.1749	0.01376	-0.00043041	NaN	51.335	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188370			77791	15141	54271	54363							0.02869902526617807
TEARSRGVEL	10	Unmodified	_TEARSRGVEL_					0	0	0			REV__ENST00000567941.5_1_15:73075655-73075820:-|nuORF	REV__ENST00000567941.5_1_15:73075655-73075820:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	559.2704467773438	2	559.301644	1116.58874	-0.54114	-0.00030266	3.0254	0.0016921	2.4843	0.0013895	559.3026726643307	63.139	0.6475	62.9	62.736	63.384	-0.23926					23	16	2	0	0	0	0.03519	1	7317	7317		95.815	2.6719	1	302700	+		77792	35330	54272	54364	85861	85861					0.03510440869581544
TEATGELLY	9	Unmodified	_TEATGELLY_					0	0	0			REV__nc|ENSG00000129003|Q709C8-3|VPS13C	REV__nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7477111816406	2	498.747847	995.481142	0.30946	0.00015434	-0.22648	-0.00011296	0.082984	4.1388E-05	498.74763220529127	68.091	0.88316	67.858	67.595	68.479	-0.23375					57	21	4	0	0	0	0.20304	1	7891	7891		88.643	14.126	1	3977000	+		77793	23025	54273	54365	85862	85862					-0.016779487845155927
TEAVVGIVVY	10	Unmodified	_TEAVVGIVVY_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2960815429688	2	525.297507	1048.58046	-1.06	-0.0005568	-0.49371	-0.00025934	-1.5537	-0.00081614	525.2971511216385	81.13	1.119	80.999	80.741	81.86	-0.13075					65	27	3	0	0	0	0.28649	1	10056	10056		110.34	14.522	1	5799100			77794	5800	54274	54366	85863	85863					0.058114939002507526
TEAWCLSFNQH	11	Unmodified	_TEAWCLSFNQH_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.6360168457031	3	445.8644	1334.57137	-0.89205	-0.00039773	-1.495	-0.00066655	-2.387	-0.0010643	446.1979600651838	39.136	0.89276	39.159	38.882	39.775	0.023727					42	24	3	0	0	0	0.024748	1	3332	3332		18.531	0	1	262300			77795	774	54275	54367	85864	85864					-0.0825322272773974
TECQETVQL	9	Unmodified	_TECQETVQL_					0	0	0		ENST00000403534.7_1_19:45250964-45261799:+|nuORF;ENSG00000069399|ENST00000164227|BCL3	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.272216796875	2	525.742239	1049.46993	-0.54804	-0.00028813	3.6116	0.0018988	3.0636	0.0016106	526.244925787803	39.409	0.17159	39.409	39.357	39.529	0					6	4	2	0	0	0	0.024319	1	3379	3379		47.657	0	1	52045			77796	13698	54276	54368	85865	85865					-0.05283094150308898
TECRPFSPS	9	Unmodified	_TECRPFSPS_					0	0	0			REV__ENST00000470306.5_1_1:156126086-156128580:+|nuORF	REV__ENST00000470306.5_1_1:156126086-156128580:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.281982421875	2	512.231842	1022.44913	0.32738	0.00016769	1.2347	0.00063248	1.5621	0.00080017	512.2313292492026	95.687	0.21454	95.691	95.601	95.815	0.0033722					7	4	2	0	0	0	0.024541	1	12162	12162		17.365	0	1	32355	+		77797	33153	54277	54369	85866	85866					-0.06119639739301874
TEDCIASGHMD	11	Unmodified	_TEDCIASGHMD_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.7504272460938	2	589.726263	1177.43797	-0.71587	-0.00042217	-3.5833	-0.0021132	-4.2992	-0.0025354	589.7244706164435	60.469	0.325	60.263	60.011	60.336	-0.20599					10	7	2	0	0	0	0.024732	1	6737	6737		32.812	0	1	104280			77798	14277	54278	54370	85867	85867					-0.14364829895771436
TEEAVPARV	9	Unmodified	_TEEAVPARV_					0	0	0		ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF	ENST00000532415.5_1_16:18480742-18495490:-|nuORF	ENST00000532415.5_1_16:18480742-18495490:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2616882324219	2	486.261456	970.50836	-1.2066	-0.00058675	1.0185	0.00049527	-0.18813	-9.1481E-05	486.26183916381086	38.292	0.72641	38.292	38.071	38.797	0					53	19	4	0	0	0	0.50848	1	3209	3209		58.782	0	1	6256500			77799	16288	54279	54371	85868	85868					0.02192579546522211
TEEAYDIIN	9	Unmodified	_TEEAYDIIN_					0	0	0		ENST00000554334.5_1_14:65482315-65499209:+|nuORF;ENST00000556709.1_1_14:65494183-65499093:+|nuORF;nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2551879882812	2	534.248212	1066.48187	-0.66408	-0.00035478	-4.1025	-0.0021917	-4.7665	-0.0025465	534.2459281406827	52.259	0.59072	52.351	52.119	52.71	0.091942					27	14	3	0	0	0	0.024397	1	5562	5562		39.253	19.256	1	162630			77800	16654	54280	54372	85869	85869					-0.048711541354578
TEEAYDIIN	9	Unmodified	_TEEAYDIIN_					0	0	0		ENST00000554334.5_1_14:65482315-65499209:+|nuORF;ENST00000556709.1_1_14:65494183-65499093:+|nuORF;nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.248212	1066.48187	-0.10169	-5.433E-05	-6.07	-0.0032429	-6.1717	-0.0032972	534.2443181561129	52.456	0.47224	52.309	52.057	52.53	-0.14723	-0.017105	-0.00025858	NaN	23.523	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233750			77801	16654	54280	54372							-0.048711541354578
TEEAYDIIN	9	Unmodified	_TEEAYDIIN_					0	0	0		ENST00000554334.5_1_14:65482315-65499209:+|nuORF;ENST00000556709.1_1_14:65494183-65499093:+|nuORF;nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.248212	1066.48187	-0.81207	-0.00043385	-6.3577	-0.0033966	-7.1698	-0.0038305	534.2445288584014	52.437	0.35354	52.318	52.126	52.48	-0.11876	-0.0081628	-0.00056606	NaN	23.523	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216810			77802	16654	54280	54372							-0.048711541354578
TEEDYIPY	8	Unmodified	_TEEDYIPY_					0	0	0		ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.28173828125	2	515.224205	1028.43386	-0.38852	-0.00020017	3.414	0.001759	3.0255	0.0015588	515.2272992987628	65.666	0.16637	65.393	65.297	65.464	-0.27283					8	4	3	0	0	0	0.027866	1	7763	7763		28.254	0	1	102820			77803	1592	54281	54373	85870	85870					-0.0792222805550864
TEEDYQFRK	9	Unmodified	_TEEDYQFRK_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.5870056152344	3	405.859532	1214.55677	0.51347	0.0002084	-2.0469	-0.00083075	-1.5334	-0.00062236	405.858464877444	24.917	0.39682	24.742	24.511	24.907	-0.17484					12	8	2	0	0	0	0.024438	1	1139	1139		29.17	0	1	46968	+		77804	28709	54282	54374	85871	85871					-0.04192971604265949
TEEFLMEVK	9	Unmodified	_TEEFLMEVK_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.34326171875	2	563.278457	1124.54236	0.044919	2.5302E-05	-3.37	-0.0018982	-3.3251	-0.0018729	563.2762500233355	89.475	0.67792	89.337	89.028	89.706	-0.13761					23	15	2	0	0	0	0.024541	1	10912	10912		6.7355	0	1	133910	+		77805	21116	54283	54375	85872	85872					-0.014927600767350668
TEEKAPKEV	9	Unmodified	_TEEKAPKEV_					0	0	0			REV__nc|ENSG00000185049|Q9H3P2-7|NELFA	REV__nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8084716796875	2	515.774396	1029.53424	-0.40793	-0.0002104	0.50043	0.00025811	0.092497	4.7708E-05	515.7745809581933	67.357	0.79572	67.381	67.028	67.824	0.023903					44	19	3	0	0	0	0.024319	1	7992	7992		47.657	0	1	1541300	+		77806	27728	54284	54376	85873	85873					0.02065428998139396
TEEKGLLL	8	Unmodified	_TEEKGLLL_					0	0	0		ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7734069824219	2	451.7633	901.512048	0.099516	4.4958E-05	0.049754	2.2477E-05	0.14927	6.7435E-05	451.76322632785644	78.904	0.71195	78.904	78.531	79.243	0					30	16	2	0	0	0	0.027866	1	9804	9804		21.702	2.3424	1	299040			77807	10958	54285	54377	85874	85874					0.05735249320400726
TEEKLHKR	8	Unmodified	_TEEKLHKR_					0	0	0			REV__nc|ENSG00000018189|Q7L099|RUFY3	REV__nc|ENSG00000018189|Q7L099|RUFY3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2327270507812	2	520.795998	1039.57744	-0.66432	-0.00034598	0.22186	0.00011554	-0.44246	-0.00023043	520.795812373743	45.746	0.46447	45.544	45.391	45.855	-0.20226					17	12	2	0	0	0	0.027866	1	4337	4337		24.203	3.7209	1	270030	+		77808	19977	54286	54378	85875	85875					0.05923663566090909
TEELKREV	8	Unmodified	_TEELKREV_					0	0	0		chr17:30568318-30568815|494|17.3|0.18|6.58|-|0|KRT17P3,KRT17P3|1	chr17:30568318-30568815|494|17.3|0.18|6.58|-|0|KRT17P3,KRT17P3|1	chr17:30568318-30568815|494|17.3|0.18|6.58|-|0|KRT17P3,KRT17P3|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2746887207031	2	502.274564	1002.53457	-0.48341	-0.0002428	-0.23972	-0.00012041	-0.72313	-0.00036321	502.2744610648782	48.78	1.9579	48.628	48.295	50.253	-0.15277					142	54	5	0	0	0	0.64735	1	5045	5045		71.877	7.6702	1	24249000			77809	353	54287	54379	85876	85876					0.03340848718005418
TEEPQAGDG	9	Unmodified	_TEEPQAGDG_					0	0	0			REV__nc|ENSG00000089597|Q14697-2|GANAB	REV__nc|ENSG00000089597|Q14697-2|GANAB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	452.2425842285156	2	452.188154	902.361755	-0.22354	-0.00010108	2.5518	0.0011539	2.3283	0.0010528	452.1892774868076	53.981	0.26991	53.784	53.619	53.889	-0.19739					10	8	2	0	0	0	0.024477	1	5658	5658		9.7057	0	1	196500	+		77810	20856	54288	54380	85877	85877					-0.09333142409218453
TEERSKEV	8	Unmodified	_TEERSKEV_					0	0	0		ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7943115234375	2	489.248546	976.482539	-0.71821	-0.00035138	3.3697	0.0016486	2.6515	0.0012972	489.2507607537755	62.875	0.32492	62.875	62.729	63.054	0					13	7	3	0	0	0	0.027866	1	7315	7315		45.972	20.398	1	166060			77811	7596	54289	54381	85878	85878					-0.006643146957458157
TEFEVRVQSQ	10	Unmodified	_TEFEVRVQSQ_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	611.2796020507812	2	611.806759	1221.59897	-0.59111	-0.00036165	3.9606	0.0024231	3.3695	0.0020615	611.8089019804229	63.033	0.45241	62.849	62.704	63.157	-0.18386					16	10	2	0	0	0	0.03519	1	7112	7112		27.047	19.243	1	226030			77812	17826	54290	54382	85879	85879					-0.002969961958569911
TEFEVRVQSQ	10	Unmodified	_TEFEVRVQSQ_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	611.806759	1221.59897	-1.2191	-0.00074586	4.6629	0.0028528	3.4438	0.002107	611.8094695140003	63.08	0.49003	62.859	62.691	63.181	-0.22097	-0.031692	0.00077535	NaN	27.047	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553970			77813	17826	54290	54382							-0.002969961958569911
TEFEVRVQSQ	10	Unmodified	_TEFEVRVQSQ_					0	0	0		L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	L1ME1_dup20737|chr11:12960950-12961643:-|2.768310798841048|0.3279391910638228|3.08|512.0|4|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	611.806759	1221.59897	-0.17431	-0.00010665	3.2451	0.0019854	3.0708	0.0018787	611.8086367560178	63.222	0.41196	62.964	62.75	63.162	-0.25824	0.073427	-0.00095949	NaN	27.047	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437520			77814	17826	54290	54382							-0.002969961958569911
TEFSTPPVQV	10	Unmodified	_TEFSTPPVQV_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8158569335938	2	552.782222	1103.54989	0.36565	0.00020213	3.3571	0.0018557	3.7227	0.0020579	552.783820246389	98.803	0.74266	98.799	98.513	99.256	-0.0038757					41	16	3	0	0	0	0.03519	1	12547	12547		74.255	0	1	242230	+		77815	25795	54291	54383	85880	85880					0.0022571551519376953
TEFSVRVLP	9	Unmodified	_TEFSVRVLP_					0	0	0			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2963256835938	2	524.295299	1046.57605	-0.85944	-0.0004506	-0.24198	-0.00012687	-1.1014	-0.00057747	524.2958621531074	51.685	0.42028	51.538	51.157	51.577	-0.14735					15	11	2	0	0	0	0.024457	1	5475	5475		45.952	15.448	1	1732900	+		77816	24369	54292	54384	85881	85881					0.05462029477325814
TEFVFRAF	8	Unmodified	_TEFVFRAF_					0	0	0		ENSG00000180475|ENST00000316770|OR10Q1	ENSG00000180475|ENST00000316770|OR10Q1	ENSG00000180475|ENST00000316770|OR10Q1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.28314208984375	2	508.763635	1015.51272	0.078899	4.0141E-05	2.8699	0.0014601	2.9488	0.0015002	508.7650680446579	45.978	0.5548	45.882	45.632	46.187	-0.096649					25	14	3	0	0	0	0.027866	1	4450	4450		19.36	0	1	1721300			77817	8980	54293	54385	85882	85882					0.005580887600899587
TEGGSKGIKTS	11	Unmodified	_TEGGSKGIKTS_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.2564697265625	2	532.782753	1063.55095	-0.32416	-0.00017271	-3.5971	-0.0019165	-3.9212	-0.0020892	533.2817011435419	62.943	0.35409	62.684	62.606	62.96	-0.25824					13	8	2	0	0	0	0.02474	1	7071	7071		32.751	16.277	1	451770			77818	1055	54294	54386	85883	85883					0.021719298841162527
TEGKKIPK	8	Unmodified	_TEGKKIPK_					0	0	0		ENST00000223073.6_1_7:127950586-127950808:-|nuORF	ENST00000223073.6_1_7:127950586-127950808:-|nuORF	ENST00000223073.6_1_7:127950586-127950808:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.7699279785156	2	450.779285	899.544017	-1.2866	-0.00057997	1.3944	0.00062855	0.10776	4.8577E-05	450.77975208917576	21.503	0.77759	21.29	21.02	21.798	-0.2128					24	15	2	0	0	0	0.027866	1	691	691		16.473	3.0191	1	282020			77819	11195	54295	54387	85884	85884					0.09022661794176656
TEGVVKGLVSL	11	Unmodified	_TEGVVKGLVSL_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.33154296875	2	551.329339	1100.64412	2.5299	0.0013948	-1.3956	-0.00076942	1.1343	0.00062539	551.328419063258	18.725	0.59503	18.483	18.274	18.869	-0.24256					30	11	3	0	0	0	1.0292	1	343	343		30.318	4.8675	1	330930	+		77820	20914	54296	54388	85885	85885					0.09782854337322533
TEHKHTLE	8	Unmodified	_TEHKHTLE_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7508239746094	2	497.751256	993.487959	0.43588	0.00021696	-1.0588	-0.00052703	-0.62294	-0.00031007	497.7506876229669	40.278	0.70614	40.278	39.951	40.657	0					61	19	4	0	0	0	0.42327	1	3530	3530		94.006	0	1	7138300			77821	5783	54297	54389	85886	85886					-0.009045911132830042
TEHKHTLE	8	Unmodified	_TEHKHTLE_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.75128173828125	2	497.751256	993.487959	-0.52206	-0.00025986	-0.17956	-8.9375E-05	-0.70162	-0.00034923	497.75113640447915	40.455	0.66793	40.478	40.162	40.83	0.023006					59	18	4	0	0	0	0.42327	1	3508	3508		94.006	0	1	7285100			77822	5783	54297	54389	85887	85887					-0.009045911132830042
TEHLFYVVV	9	Unmodified	_TEHLFYVVV_					0	0	0			REV__sp|P03192|BMRF2_EBVB9ProteinBMRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF2PE=1SV=1	REV__sp|P03192|BMRF2_EBVB9ProteinBMRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BMRF2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.766845703125	2	553.797675	1105.5808	-0.76385	-0.00042302	-4.3208	-0.0023928	-5.0846	-0.0028158	553.7947470747827	54.234	0.42916	54.098	53.897	54.326	-0.13616					24	12	2	0	0	0	0.024466	1	5777	5777		25.45	3.4903	1	363270	+		77823	37531	54298	54390	85888	85888					0.03222913620084
TEHMISVSAF	10	Oxidation (M)	_TEHM(Oxidation (M))ISVSAF_		TEHM(1)ISVSAF		TEHM(42)ISVSAF	0	0	1		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2676391601562	2	569.265881	1136.51721	-0.21662	-0.00012331	3.205	0.0018245	2.9884	0.0017012	569.2676428431818	23.452	2.3501	23.272	21.43	23.78	-0.17989					184	51	4	0	0	0	1.0271	1	893	893		42.396	12.078	1	3402100			77824	5322	54299	54391	85889	85889		217			-0.04558814879305828
TEHRLKPW	8	Unmodified	_TEHRLKPW_					0	0	0		ENSG00000095932|ENST00000215531|SMIM24	ENSG00000095932|ENST00000215531|SMIM24	ENSG00000095932|ENST00000215531|SMIM24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2454223632812	2	533.793258	1065.57196	-0.80404	-0.00042919	-1.3829	-0.00073819	-2.187	-0.0011674	533.792326542499	33.514	0.30895	33.314	33.133	33.442	-0.20019					14	7	3	0	0	0	0.027866	1	2377	2377		7.6903	0	1	158680			77825	2041	54300	54392	85890	85890					0.04179984774305012
TEIFSGKSVA	10	Unmodified	_TEIFSGKSVA_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.7874145507812	2	519.776939	1037.53933	1.3342	0.00069346	2.8763	0.001495	4.2105	0.0021885	519.777860113877	24.99	0.3462	24.818	24.688	25.034	-0.17151					10	7	2	0	0	0	0.03519	1	1107	1107		36.447	11.928	1	28181			77826	1577	54301	54393	85891	85891					0.022057328607843374
TEIIIIGLI	9	Unmodified	_TEIIIIGLI_					0	0	0		MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|16|1|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|16|1|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|16|1|anti-sense	MSMS	OPSCC_39_ClassI_Rep-2	2	492.8209533691406	2	492.820618	983.626684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.49	1	107.49	106.99	107.99	-0.003479								0	0	0	0.60629	1	13757	13757		38.806	1.647	1				77827	17984	54302	54394	85892	85892					0.13421558802315303
TEIIKTAKVG	10	Unmodified	_TEIIKTAKVG_					0	0	0		ENST00000482295.1_1_9:136213358-136213517:-|nuORF	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	ENST00000482295.1_1_9:136213358-136213517:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2403564453125	2	530.324057	1058.63356	-0.2093	-0.000111	2.9528	0.0015659	2.7435	0.0014549	530.3251009249011	107.21	0.39221	107.21	106.95	107.34	-0.003479					15	10	2	0	0	0	0.03519	1	13729	13729		21.686	0	1	89504			77828	15252	54303	54395	85893	85893					0.10658871682880999
TEIIRRED	8	Unmodified	_TEIIRRED_					0	0	0			REV__ENST00000535313.1_1_12:7309311-7310674:+|nuORF	REV__ENST00000535313.1_1_12:7309311-7310674:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3087158203125	2	516.277638	1030.54072	-0.035673	-1.8417E-05	-4.2264	-0.002182	-4.2621	-0.0022004	516.7772774390397	87.255	0.79951	87.255	86.733	87.532	0					33	18	3	0	0	0	0.027866	1	10998	10998		32.812	0	1	171380	+		77829	23923	54304	54396	85894	85894					0.026673669495039576
TEIIVLATR	9	Unmodified	_TEIIVLATR_					0	0	0		ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENST00000407940.1_1_6:7339375-7339741:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2689208984375	2	508.310949	1014.60735	-1.0213	-0.00051914	0.39829	0.00020245	-0.62302	-0.00031669	508.31108552963707	44.679	0.6377	44.467	44.116	44.754	-0.21109					28	16	3	0	0	0	0.024539	1	4212	4212		20.947	0	1	508030			77830	13756	54305	54397	85895	85895					0.10062602511425212
TEILKGGVL	9	Unmodified	_TEILKGGVL_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2;ENST00000584908.5_1_17:37856482-37868536:+|nuORF	nc|ENSG00000141736|P04626-5|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2967529296875	2	465.286943	928.559333	-0.30015	-0.00013966	1.1081	0.00051557	0.80792	0.00037592	465.2872847552464	56.836	0.65947	56.672	56.423	57.083	-0.16432					24	18	2	0	0	0	0.024323	1	6286	6286		35.618	6.4687	1	109470			77831	5518	54306	54398	85896	85896					0.09219528591370363
TEILKGVLN	9	Unmodified	_TEILKGVLN_					0	0	0		nc|ENSG849|O42043|ERVK-18_env	nc|ENSG849|O42043|ERVK-18_env	nc|ENSG849|O42043|ERVK-18_env	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.25299072265625	2	493.797675	985.580796	-0.85969	-0.00042451	0.59791	0.00029525	-0.26177	-0.00012926	493.79772008779526	55.816	0.51797	55.914	55.447	55.965	0.097893					28	13	3	0	0	0	0.024436	1	6043	6043		30.504	1.3541	1	1410100			77832	18852	54307	54399	85897	85897					0.08742913620096715
TEIMSNITI	9	Unmodified	_TEIMSNITI_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.2657470703125	2	511.26535	1020.51615	-1.0378	-0.00053058	-2.1163	-0.001082	-3.1541	-0.0016126	511.2642190899408	81.006	2.9806	81.03	80.614	83.595	0.023903					179	71	5	0	0	0	0.26966	1	10062	10062		79.713	10.085	1	8810800	+		77833	26603	54308	54400	85898	85898					0.006709707517870811
TEIMSNITI	9	Unmodified	_TEIMSNITI_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.2635803222656	2	511.26535	1020.51615	0.11573	5.9167E-05	-3.6818	-0.0018824	-3.5661	-0.0018232	511.263426838151	81.166	2.8244	80.973	80.561	83.385	-0.19333					137	66	4	0	0	0	0.22902	1	9829	9829		85.161	2.9203	1	6885400	+		77834	26603	54308	54400	85899	85899					0.006709707517870811
TEIVIEFEP	9	Unmodified	_TEIVIEFEP_					0	0	0			REV__nc|ENSG00000071994|Q16342-4|PDCD2	REV__nc|ENSG00000071994|Q16342-4|PDCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.305419921875	2	538.779148	1075.54374	-0.45118	-0.00024309	2.9218	0.0015742	2.4707	0.0013311	539.2826286581414	85.716	0.76344	85.579	85.155	85.919	-0.13752					21	17	2	0	0	0	0.024405	1	10395	10395		44.117	5.3107	1	52135	+		77835	20458	54309	54401	85900	85900					0.00899197283661124
TEIVPCVLKV	10	Unmodified	_TEIVPCVLKV_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.8206787109375	2	550.822835	1099.63112	0.17607	9.6981E-05	-3.6806	-0.0020273	-3.5045	-0.0019304	550.8207980834624	101.79	1.9465	101.66	100.81	102.76	-0.12666					103	46	4	0	0	0	0.50517	1	12652	12652		87.696	1.8346	1	1137200			77836	590	54310	54402	85901	85901					0.08528699953581054
TEIVSNYLT	9	Unmodified	_TEIVSNYLT_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8182983398438	2	520.268947	1038.52334	0.29356	0.00015273	-1.6262	-0.00084605	-1.3326	-0.00069332	520.2680390959688	70.921	0.44475	70.921	70.7	71.145	0					21	10	3	0	0	0	0.024292	1	8613	8613		32.812	13.709	1	305770	+		77837	20082	54311	54403	85902	85902					0.005620266238565819
TEKARVKRLL	10	Unmodified	_TEKARVKRLL_					0	0	0			REV__ENSG00000196419|ENST00000360079|XRCC6	REV__ENSG00000196419|ENST00000360079|XRCC6	MSMS	OPSCC_40_ClassI_Rep-2	5	405.2651062011719	3	405.262823	1212.76664	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.82	1	113.68	113.18	114.18	-0.14448								0	0	0	0.77833	1	13701	13701		11.097	3.697	1		+		77838	28180	54312	54404	85903	85903					0.16876735859409564
TEKCYGNRLGR	11	Unmodified	_TEKCYGNRLGR_					0	0	0			REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;REV__nc|ENSG00000114805|Q4KWH8|PLCH1	REV__nc|ENSG00000114805|Q4KWH8|PLCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.25567626953125	3	432.887428	1295.64045	0.21209	9.1811E-05	-2.8251	-0.001223	-2.613	-0.0011311	432.88521139369163	97.014	1.8225	96.853	96.086	97.908	-0.16106					70	41	2	0	0	0	0.024759	1	12105	12105		17.833	3.1395	1	51388	+		77839	22146;36582	54313	54405	85904	85904					0.004458612918142535
TEKDFSEKHS	10	Unmodified	_TEKDFSEKHS_					0	0	0		ENSG00000100209|ENST00000216027|HSCB;ENST00000485599.5_1_22:29138272-29141477:+|nuORF	ENSG00000100209|ENST00000216027|HSCB	ENSG00000100209|ENST00000216027|HSCB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	403.2376403808594	3	403.19117	1206.55168	0.14108	5.6882E-05	3.6282	0.0014629	3.7693	0.0015197	403.1923917001443	30.766	1.661	30.778	29.884	31.545	0.011797					62	39	3	0	0	0	0.03519	1	1858	1858		48.602	1.3739	1	99332			77840	2149	54314	54406	85905	85905					-0.04333275466842679
TEKDFSEKHS	10	Unmodified	_TEKDFSEKHS_					0	0	0		ENSG00000100209|ENST00000216027|HSCB;ENST00000485599.5_1_22:29138272-29141477:+|nuORF	ENSG00000100209|ENST00000216027|HSCB	ENSG00000100209|ENST00000216027|HSCB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	403.19117	1206.55168	1.6716	0.00067399	2.1612	0.00087138	3.8329	0.0015454	403.19165489003984	30.577	0.87504	30.651	30.254	31.129	0.074314	-0.063392	-0.0010635	NaN	48.602	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76617			77841	2149	54314	54406							-0.04333275466842679
TEKKFMADCP	10	Unmodified	_TEKKFMADCP_					0	0	0		ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	585.3119506835938	2	585.270109	1168.52567	-1.6	-0.00093644	1.0146	0.00059384	-0.58539	-0.00034261	585.2707933075282	50.004	0.21055	50.004	49.842	50.052	0					7	5	2	0	0	0	0.03519	1	5197	5197		49.442	0	1	119140			77842	3732	54315	54407	85906	85906					-0.05185584234345697
TEKKHLEP	8	Unmodified	_TEKKHLEP_					0	0	0			REV__ENSG00000137819|ENST00000395407|PAQR5	REV__ENSG00000137819|ENST00000395407|PAQR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7493591308594	2	491.271824	980.529095	-0.84272	-0.000414	1.7654	0.00086729	0.92267	0.00045328	491.27305501581554	85.335	0.62155	85.361	85.078	85.699	0.025536					22	14	2	0	0	0	0.027866	1	10645	10645		29.15	0	1	246010	+		77843	23788	54316	54408	85907	85907					0.038051699261814065
TEKKIVLQQEL	11	Unmodified	_TEKKIVLQQEL_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.73516845703125	3	443.597649	1327.77112	1.6333	0.00072451	1.019	0.00045201	2.6522	0.0011765	444.267543704608	23.145	0.87467	22.953	22.526	23.4	-0.19117					30	18	3	0	0	0	0.02477	1	897	897		22.562	1.7244	1	105590	+		77844	24550	54317	54409	85908	85908					0.12034155491642196
TEKLQELEV	9	Unmodified	_TEKLQELEV_					0	0	0			REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF	REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.3109130859375	2	544.795329	1087.5761	-0.30551	-0.00016644	-4.1179	-0.0022434	-4.4235	-0.0024099	544.7928866116863	43.143	0.25648	43.174	43.01	43.267	0.030827					10	6	2	0	0	0	0.024418	1	3955	3955		54.776	5.3348	1	112340	+		77845	20201	54318	54410	85909	85909					0.03581984686684336
TEKLQVLKQ	9	Unmodified	_TEKLQVLKQ_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4;GOLGA4|p.E1068Lfs*7|1|0.18|ENSG00000144674|chr3:37325087-37325088|-/CT|frameshift_variant	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7847900390625	2	543.829506	1085.64446	-1.1874	-0.00064574	-1.0678	-0.00058071	-2.2552	-0.0012264	543.8286181070895	51.53	0.35394	51.383	51.157	51.511	-0.14735					15	9	2	0	0	0	0.024539	1	5411	5411		35.618	14.671	1	150270			77846	5759	54319	54411	85910	85910					0.10506274057183873
TEKLRRVSI	9	Unmodified	_TEKLRRVSI_					0	0	0			REV__nc|ENSG00000105976|P08581-2|MET	REV__nc|ENSG00000105976|P08581-2|MET	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.7800903320312	2	551.340572	1100.66659	-0.57769	-0.0003185	3.1997	0.0017641	2.622	0.0014456	551.3425395947913	45.277	0.40193	45.277	45.043	45.445	0					19	11	2	0	0	0	0.024427	1	4407	4407		34.173	3.8548	1	179580	+		77847	21583	54320	54412	85911	85911					0.1202849852561485
TEKLVSCFV	9	Unmodified	_TEKLVSCFV_					0	0	0			REV__ENST00000374530.7_2_9:112933363-112933447:+|nuORF	REV__ENST00000374530.7_2_9:112933363-112933447:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.2689208984375	2	513.270435	1024.52632	-0.51486	-0.00026426	-4.2045	-0.0021581	-4.7194	-0.0024223	513.268819809957	79.468	1.6715	79.468	79.035	80.707	0					86	39	4	0	0	0	0.2508	1	9872	9872		82.241	13.454	1	6158900	+		77848	31300	54321	54413	85912	85912					0.015035784770134342
TEKQTAVNKV	10	Unmodified	_TEKQTAVNKV_					0	0	0			REV__nc|ENSG00000138593|Q93073-2|SECISBP2L	REV__nc|ENSG00000138593|Q93073-2|SECISBP2L	MSMS	OPSCC_40_ClassI_Rep-3	6	559.314697265625	2	559.31422	1116.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.06	1	103.89	103.39	104.39	-0.16791								0	0	0	0.76839	1	12933	12933		52.937	8.5595	1		+		77849	23864	54322	54414	85913	85913					0.06024495672136254
TEKVSGQHVEI	11	Unmodified	_TEKVSGQHVEI_					0	0	0		nc|ENSG00000182175|Q96B86-3|RGMA;ENSG00000182175|ENST00000329082|RGMA;nc|ENSG00000182175|Q96B86-4|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.5499267578125	3	409.550698	1225.63027	0.43796	0.00017937	-2.4408	-0.00099965	-2.0029	-0.00082028	409.54962954510665	53.113	0.88559	52.986	52.552	53.437	-0.12705					67	22	4	0	0	0	0.98625	1	5576	5576		39.873	5.9515	1	4178500			77850	9108	54323	54415	85914	85914					0.02647576838239729
TEKVSGQHVEI	11	Unmodified	_TEKVSGQHVEI_					0	0	0		nc|ENSG00000182175|Q96B86-3|RGMA;ENSG00000182175|ENST00000329082|RGMA;nc|ENSG00000182175|Q96B86-4|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.5498046875	3	409.550698	1225.63027	0.015685	6.4238E-06	-1.9635	-0.00080415	-1.9478	-0.00079773	409.54984548409846	53.155	0.88425	52.965	52.51	53.395	-0.18982					72	22	4	0	0	0	0.98625	1	5519	5519		39.873	4.6949	1	4935100			77851	9108	54323	54415	85915	85915					0.02647576838239729
TELAIPLLL	9	Unmodified	_TELAIPLLL_					0	0	0			REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.8128967285156	2	491.812793	981.611034	-0.10352	-5.0914E-05	0.60187	0.00029601	0.49834	0.00024509	491.81270729613976	101.98	1.135	101.98	101.6	102.73	0					54	25	3	0	0	0	0.75282	1	13053	13053		42.474	5.3154	1	321380	+		77852	19435	54324	54416	85916	85916					0.11949272285278312
TELAIPLLL	9	Unmodified	_TELAIPLLL_					0	0	0			REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	MSMS	OPSCC_39_ClassI_Rep-2	2	491.81298828125	2	491.812793	981.611034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.97	1	101.97	101.47	102.47	0.0073471								0	0	0	0.41814	1	13024	13024		60.294	14.342	1		+		77853	19435	54324	54416	85917	85917					0.11949272285278312
TELAIPLLL	9	Unmodified	_TELAIPLLL_					0	0	0			REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	REV__chr3:182848557-182849180|109|22.14|0.28|6.33|+|1|TE_info:L1M4a1,L1M4a1_dup671,L1,LINE,acceptor,+,182849180,182850081|ATP11B,None|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.8130798339844	2	491.812793	981.611034	0.081424	4.0045E-05	0.45631	0.00022442	0.53774	0.00026447	491.8125575242196	102.02	2.0218	102.01	100.81	102.83	-0.0054474					63	46	2	0	0	0	0.85941	1	13010	13010		35.201	8.4046	1	346510	+		77854	19435	54324	54416	85918	85918					0.11949272285278312
TELAKISSI	9	Unmodified	_TELAKISSI_					0	0	0			REV__ENSG00000044524|ENST00000336596|EPHA3	REV__ENSG00000044524|ENST00000336596|EPHA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.7311096191406	2	481.281857	960.549162	-0.018439	-8.8743E-06	0.66804	0.00032152	0.6496	0.00031264	481.2819931550473	31.942	0.39688	31.942	31.789	32.186	0					14	9	2	0	0	0	0.024323	1	2178	2178		44.117	0	1	70072	+		77855	20114	54325	54417	85919	85919					0.06730920866152701
TELHHIKAEF	10	Unmodified	_TELHHIKAEF_					0	0	0			REV__nc|ENSG00000180176|P07101-6|TH;REV__ENST00000381168.7_1_11:2187868-2190906:-|nuORF	REV__nc|ENSG00000180176|P07101-6|TH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	408.88531494140625	3	408.8839	1223.62987	0.019794	8.0934E-06	2.9061	0.0011883	2.9259	0.0011964	408.88502127753674	23.269	0.68689	23.089	22.79	23.477	-0.17989					44	15	4	0	0	0	1.0393	1	892	892		37.508	3.5865	1	1128200	+		77856	27317;31509	54326	54418	85920	85920					0.027002019090105023
TELHISPFLP	10	Unmodified	_TELHISPFLP_					0	0	0			REV__ENSG00000158258|ENST00000458420|CLSTN2	REV__ENSG00000158258|ENST00000458420|CLSTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.3055419921875	2	577.316232	1152.61791	-0.58549	-0.00033801	3.4854	0.0020122	2.8999	0.0016742	577.3181778566666	75.784	0.35026	75.539	75.374	75.724	-0.24455					13	9	2	0	0	0	0.03519	1	9294	9294		9.7057	0	1	135140	+		77857	25184	54327	54419	85921	85921					0.04770585165852026
TELHLKKL	8	Unmodified	_TELHLKKL_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MSMS	OPSCC_39_ClassI_Rep-2	2	491.305908203125	2	491.30821	980.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.57	1	59.37	58.87	59.87	-0.20016								0	0	0	0.63389	1	6776	6776		45.952	0	1		+		77858	27352	54328	54420	85922	85922					0.11078923719617251
TELIDRFKRWK	11	Unmodified	_TELIDRFKRWK_					0	0	0		ENSG00000134602|ENST00000394334|STK26;nc|ENSG00000134602|Q9P289-3|STK26;nc|ENSG00000134602|Q9P289-2|STK26	ENSG00000134602|ENST00000394334|STK26	ENSG00000134602|ENST00000394334|STK26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7963562011719	3	497.952537	1490.83578	0.25793	0.00012844	-3.4833	-0.0017345	-3.2254	-0.0016061	497.95089430369177	18.638	0.79189	18.434	18.064	18.856	-0.20371					33	15	4	0	0	0	0.024834	1	275	275		12.957	0.52465	1	60383			77859	4813	54329	54421	85923	85923					0.1099977508831671
TELKRKERY	9	Unmodified	_TELKRKERY_					0	0	0			REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.9345397949219	3	408.234933	1221.68297	0.2677	0.00010928	1.377	0.00056215	1.6447	0.00067143	408.2351974767626	17.124	0.20154	16.916	16.812	17.013	-0.20777					8	3	3	0	0	0	0.024541	1	142	142		19.104	0.84144	1	21387	+		77860	19264	54330	54422	85924	85924					0.08099579691702274
TELKRKERY	9	Unmodified	_TELKRKERY_					0	0	0			REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	REV__CCNT2|p.Q469Sfs*16|1|0.14|ENSG00000082258|chr2:134953857-134953857|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	408.234933	1221.68297	1.7205	0.00070236	-0.58599	-0.00023922	1.1345	0.00046314	408.2345993595033	17.183	0.25249	17.029	16.907	17.159	-0.15403	0.056219	-0.0013306	NaN	19.104	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21733	+		77861	19264	54330	54422							0.08099579691702274
TELKVGIEP	9	Unmodified	_TELKVGIEP_					0	0	0			REV__ENST00000392679.5_2_11:126163585-126163684:+|nuORF	REV__ENST00000392679.5_2_11:126163585-126163684:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.25390625	2	493.281857	984.549162	0.824	0.00040647	0.69494	0.0003428	1.5189	0.00074927	493.2820136731714	55.687	0.57393	55.687	55.284	55.858	0					19	15	2	0	0	0	0.024427	1	6167	6167		34.173	3.6689	1	159300	+		77862	31619	54331	54423	85925	85925					0.05626920866143337
TELLAHVQEV	10	Unmodified	_TELLAHVQEV_					0	0	0			REV__AKAP6|p.I121V|1|0.34|ENSG00000151320|chr14:32535590-32535590|A/G|missense_variant	REV__AKAP6|p.I121V|1|0.34|ENSG00000151320|chr14:32535590-32535590|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2779541015625	2	569.808771	1137.60299	0.63743	0.00036321	2.503	0.0014262	3.1405	0.0017895	569.8100959312178	79.789	0.54401	79.543	79.278	79.822	-0.2465					33	12	4	0	0	0	0.03519	1	9549	9549		41.427	3.6151	1	624040	+		77863	19098	54332	54424	85926	85926					0.039690932978373894
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.78729248046875	2	493.32386	984.633166	-0.28911	-0.00014263	0.92042	0.00045407	0.63131	0.00031144	493.3243037185395	78.479	0.37591	78.495	78.356	78.732	0.015907					12	8	2	0	0	0	0.027866	1	9655	9655		40.573	0	1	55308			77864	7790;15600	54333	54425	85927	85927					0.14023496753691234
TELLLRHR	8	Unmodified	_TELLLRHR_					0	0	0			REV__ENSG00000110719|ENST00000265686|TCIRG1	REV__ENSG00000110719|ENST00000265686|TCIRG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.23193359375	2	519.314358	1036.61416	-0.56761	-0.00029477	-3.5539	-0.0018456	-4.1215	-0.0021403	519.3122803923848	46.262	1.67	46.06	45.358	47.028	-0.20226					83	46	3	0	0	0	0.027866	1	4349	4349		17.365	2.7009	1	385860	+		77865	21870	54334	54426	85928	85928					0.09731960182648436
TELPPILLS	9	Unmodified	_TELPPILLS_					0	0	0			REV__ENST00000571666.1_1_16:21273345-21289551:-|nuORF	REV__ENST00000571666.1_1_16:21273345-21289551:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.27276611328125	2	491.794601	981.574648	-1.0255	-0.00050436	1.7192	0.0008455	0.69366	0.00034114	491.7962922380101	55.562	1.0631	55.66	55.183	56.246	0.098015					57	28	3	0	0	0	0.024506	1	6110	6110		10.866	0	1	341570	+		77866	35408	54335	54427	85929	85929					0.08312395388577443
TELRKVKNE	9	Unmodified	_TELRKVKNE_					0	0	0			REV__ENSG00000122966|ENST00000392521|CIT	REV__ENSG00000122966|ENST00000392521|CIT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.8328247070312	2	558.822212	1115.62987	-0.39639	-0.00022151	0.68675	0.00038377	0.29036	0.00016226	558.8229086741862	39.525	0.31007	39.361	39.228	39.538	-0.16459					10	7	2	0	0	0	0.024283	1	3338	3338		65.465	8.7443	1	110640	+		77867	22672	54336	54428	85930	85930					0.07668201909041272
TELSHIISL	9	Unmodified	_TELSHIISL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.7880554199219	2	506.787307	1011.56006	-0.072849	-3.6919E-05	-0.91638	-0.00046441	-0.98923	-0.00050133	506.7866795278597	49.037	0.85478	49.037	48.69	49.544	0					62	23	3	0	0	0	0.50848	1	5063	5063		58.782	7.5893	1	3169300	+		77868	23340	54337	54429	85931	85931					0.054743232404462105
TELSHIISL	9	Unmodified	_TELSHIISL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7885437011719	2	506.787307	1011.56006	-0.36364	-0.00018429	-0.24838	-0.00012588	-0.61202	-0.00031016	506.78675821252	49.188	1.5551	49.035	48.261	49.816	-0.15277					97	42	5	0	0	0	0.50848	1	5054	5054		58.782	7.4465	1	3626500	+		77869	23340	54337	54429	85932	85932					0.054743232404462105
TELSHIISL	9	Unmodified	_TELSHIISL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.78863525390625	2	506.787307	1011.56006	-1.0646	-0.00053955	0.21985	0.00011142	-0.84478	-0.00042813	506.7872167151045	48.946	0.80366	49.021	48.736	49.54	0.074196					57	21	3	0	0	0	0.6504	1	4958	4958		49.442	0	1	2764200	+		77870	23340	54337	54429	85933	85933					0.054743232404462105
TELTQGMIL	9	Unmodified	_TELTQGMIL_					0	0	0		AHSA1|p.F159L|1|0.33|ENSG00000100591|chr14:77464602-77464602|C/A|missense_variant	AHSA1|p.F159L|1|0.33|ENSG00000100591|chr14:77464602-77464602|C/A|missense_variant	AHSA1|p.F159L|1|0.33|ENSG00000100591|chr14:77464602-77464602|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.2682800292969	2	503.267893	1004.52123	0.81658	0.00041096	-0.56535	-0.00028452	0.25123	0.00012644	503.26735804936493	71.17	0.81647	70.881	70.297	71.113	-0.28858					36	19	2	0	0	0	0.32811	1	8561	8561		71.877	7.6702	1	1374500			77871	52	54338	54430	85934	85934					0.019152746144072808
TELVLHDIT	9	Unmodified	_TELVLHDIT_					0	0	0			REV__TTYH1|p.P164Rfs*34|1|0.38|ENSG00000167614|chr19:54422262-54422262|C/-|frameshift_variant	REV__TTYH1|p.P164Rfs*34|1|0.38|ENSG00000167614|chr19:54422262-54422262|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8186645507812	2	520.784764	1039.55498	0.42154	0.00021953	-0.4098	-0.00021342	0.011742	6.1151E-06	520.7846301231486	71.609	0.76335	71.321	70.96	71.724	-0.28857					30	19	2	0	0	0	0.023417	1	8647	8647		68.787	26.391	1	1316900	+		77872	26164	54339	54431	85935	85935					0.036780193777985914
TELVRELSRQI	11	Unmodified	_TELVRELSRQI_					0	0	0			REV__ENSG00000221829|ENST00000378643|FANCG	REV__ENSG00000221829|ENST00000378643|FANCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2082214355469	3	448.592898	1342.75686	-0.23552	-0.00010565	0.39695	0.00017807	0.16143	7.2416E-05	448.5931471595664	32.219	0.35061	32.219	31.989	32.34	0					13	8	2	0	0	0	0.024797	1	2217	2217		15.337	0.64381	1	75168	+		77873	28829	54340	54432	85936	85936					0.09919503063360935
TELVTKGRV	9	Unmodified	_TELVTKGRV_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENST00000491885.6_1_6:111982944-111997736:-|nuORF;ENST00000418510.1_1_22:26044617-26045175:+|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.8006896972656	2	501.800749	1001.58694	0.11178	5.6092E-05	-1.1402	-0.00057213	-1.0284	-0.00051604	501.8002032003808	46.464	1.501	46.464	46.09	47.591	0					138	41	5	0	0	0	0.6504	1	4658	4658		49.442	1.5259	1	40403000			77874	881	54341	54433	85937	85937					0.08621431851622674
TEMATEQLY	9	Unmodified	_TEMATEQLY_					0	0	0			REV__ENST00000533296.5_1_6:130497274-130536439:-|nuORF	REV__ENST00000533296.5_1_6:130497274-130536439:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2439575195312	2	543.244615	1084.47468	-0.01577	-8.5669E-06	3.2922	0.0017884	3.2764	0.0017799	543.2444413470183	67.132	3.6672	66.884	66.511	70.178	-0.24839					172	93	3	0	0	0	0.77768	1	7727	7727		40.778	2.9666	1	2240700	+		77875	34600	54342	54434	85938	85938					-0.06418210007541347
TENALQTH	8	Unmodified	_TENALQTH_					0	0	0		ENST00000301633.8_1_17:76220872-76221046:+|nuORF	ENST00000301633.8_1_17:76220872-76221046:+|nuORF	ENST00000301633.8_1_17:76220872-76221046:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.2235412597656	2	457.222331	912.430109	0.55048	0.00025169	-0.30141	-0.00013781	0.24907	0.00011388	457.2221120017142	101.25	0.68512	101.25	100.89	101.58	-0.0054474					39	15	3	0	0	0	0.96769	1	12884	12884		42.396	3.1433	1	368620			77876	11932	54343	54435	85939	85939					-0.029608530387235987
TENKLRGLN	9	Unmodified	_TENKLRGLN_					0	0	0			REV__ENST00000360472.8_1_1:160183890-160184079:+|nuORF	REV__ENST00000360472.8_1_1:160183890-160184079:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.834228515625	2	522.793455	1043.57236	-0.69732	-0.00036455	3.0072	0.0015721	2.3099	0.0012076	522.7949481133088	69.355	0.19157	69.355	69.273	69.464	0					6	4	2	0	0	0	0.024397	1	8357	8357		39.253	0	1	302480	+		77877	30909	54344	54436	85940	85940					0.052313597034981285
TENWEISK	8	Unmodified	_TENWEISK_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7669677734375	2	503.745639	1005.47673	-0.31745	-0.00015992	0.65326	0.00032908	0.33581	0.00016916	503.7458480861832	58.974	0.58917	58.786	58.471	59.06	-0.18795					23	14	2	0	0	0	0.027866	1	6469	6469		16.473	0	1	444790			77878	18314	54345	54437	85941	85941					-0.02579413207433845
TENWSRLTP	9	Unmodified	_TENWSRLTP_					0	0	0			REV__ENST00000298130.4_1_14:34904317-34904410:-|nuORF	REV__ENST00000298130.4_1_14:34904317-34904410:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.3113403320312	2	552.277638	1102.54072	-0.71826	-0.00039668	3.2943	0.0018194	2.576	0.0014227	552.2791629063884	33.272	1.1031	33.272	32.79	33.894	0					54	29	3	0	0	0	0.024261	1	2406	2406		54.776	0	1	269020	+		77879	30022	54346	54438	85942	85942					-0.0064463305047866015
TEPAFITV	8	Unmodified	_TEPAFITV_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2481689453125	2	439.236919	876.459284	-0.55337	-0.00024306	-1.6552	-0.00072704	-2.2086	-0.0009701	439.23659298540696	33.232	0.34488	33.239	33.043	33.388	0.0066261					11	9	2	0	0	0	0.027866	1	2332	2332		26.796	0	1	176990			77880	4441	54347	54439	85943	85943					0.016112912575636074
TEPALILI	8	Unmodified	_TEPALILI_					0	0	0			REV__ENSG00000255378|ENST00000528972|PRR23D2	REV__ENSG00000255378|ENST00000528972|PRR23D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.247314453125	2	435.270761	868.52697	-0.82159	-0.00035761	1.4285	0.00062178	0.60691	0.00026417	435.27061167568127	29.039	0.40827	29.039	28.778	29.186	0					15	9	2	0	0	0	0.027866	1	1759	1759		20.482	0	1	82895	+		77881	29064	54348	54440	85944	85944					0.08744741188399985
TEPCNQVYIV	10	Unmodified	_TEPCNQVYIV_					0	0	0			REV__ENSG00000165406|ENST00000453424|MARCHF8	REV__ENSG00000165406|ENST00000453424|MARCHF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.2796020507812	2	583.281531	1164.54851	-0.25335	-0.00014777	3.8867	0.0022671	3.6334	0.0021193	583.7855881713868	47.915	0.26102	47.728	47.526	47.787	-0.18684					9	6	2	0	0	0	0.03519	1	4697	4697		27.882	2.3082	1	190360	+		77882	25883	54349	54441	85945	85945					-0.027182418452412094
TEPIQPLEP	9	Unmodified	_TEPIQPLEP_					0	0	0		ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2689208984375	2	512.27149	1022.52843	-0.54278	-0.00027805	0.32364	0.00016579	-0.21914	-0.00011226	512.271593603961	79.68	0.75645	79.68	79.364	80.12	0					29	17	2	0	0	0	0.02435	1	9872	9872		34.173	0	1	455760			77883	3662	54350	54442	85946	85946					0.018063304864767815
TEPIRKSL	8	Unmodified	_TEPIRKSL_					0	0	0			REV__ENSG00000196131|ENST00000341702|VN1R2	REV__ENSG00000196131|ENST00000341702|VN1R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7515869140625	2	472.282192	942.549831	0.42981	0.00020299	-0.089054	-4.2059E-05	0.34076	0.00016093	472.2820049400172	33.653	0.83635	33.709	33.423	34.26	0.056568					54	20	4	0	0	0	0.027866	1	2413	2413		44.117	8.4985	1	1039900	+		77884	28130	54351	54443	85947	85947					0.0762576030585933
TEPIRKVPV	9	Unmodified	_TEPIRKVPV_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8190307617188	2	519.818941	1037.62333	0.39079	0.00020314	-0.95648	-0.0004972	-0.56569	-0.00029406	519.8185167136494	71.654	3.022	71.366	70.459	73.481	-0.28858					180	76	4	0	0	0	0.50848	1	8624	8624		58.782	2.0609	1	29892000			77885	18157;37870	54352	54444	85948	85948					0.10602308748320866
TEPKLATP	8	Unmodified	_TEPKLATP_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;POLD3|p.R300Gfs*5|1|0.67|ENSG00000077514|chr11:74625564-74625564|A/-|frameshift_variant;nc|ENSG00000077514|Q15054-3|POLD3;nc|ENSG00000077514|Q15054-2|POLD3	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.794677734375	2	428.742368	855.470183	1.6819	0.00072109	-1.2848	-0.00055087	0.39703	0.00017022	428.7417260719666	64.019	0.6097	64.064	63.688	64.298	0.045502					22	16	2	0	0	0	0.027866	1	7443	7443		30.504	26.819	1	145100			77886	1615	54353	54445	85949	85949					0.03666693631862472
TEPMRSEQS	9	Unmodified	_TEPMRSEQS_					0	0	0			REV__ENSG00000117877|ENST00000309424|POLR1G	REV__ENSG00000117877|ENST00000309424|POLR1G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7899780273438	2	532.737488	1063.46042	1.1399	0.00060726	1.0637	0.00056665	2.2035	0.0011739	532.7379104099758	64.012	0.32125	64.057	63.903	64.225	0.045502					12	8	2	0	0	0	0.024374	1	7421	7421		19.104	0	1	114410	+		77887	22378	54354	54446	85950	85950					-0.0687686243581993
TEPPPLPPK	9	Unmodified	_TEPPPLPPK_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2409362792969	2	488.279118	974.543683	-0.48357	-0.00023612	2.93	0.0014307	2.4464	0.0011945	488.28053246562496	52.373	0.28487	52.465	52.28	52.565	0.091938					11	6	2	0	0	0	0.024506	1	5522	5522		30.504	0	1	575300			77888	1139	54355	54447	85951	85951					0.05539242074326012
TEPQASQLLD	10	Unmodified	_TEPQASQLLD_					0	0	0		ENSG00000213983|ENST00000397120|AP1G2;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENSG00000213983|ENST00000397120|AP1G2	ENSG00000213983|ENST00000397120|AP1G2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.3213500976562	2	551.274761	1100.53497	-0.56954	-0.00031397	-1.3488	-0.00074357	-1.9184	-0.0010575	551.2735560896131	63.272	1.0215	63.024	62.606	63.628	-0.24793					51	25	3	0	0	0	0.03519	1	7352	7352		35.152	8.4591	1	538930			77889	10532	54356	54448	85952	85952					-0.01127776352791443
TEPRLTRSC	9	Unmodified	_TEPRLTRSC_					0	0	0		ENSG00000175854|ENST00000418976|SWI5;nc|ENSG00000175854|Q1ZZU3|SWI5	ENSG00000175854|ENST00000418976|SWI5	ENSG00000175854|ENST00000418976|SWI5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7716674804688	2	531.771665	1061.52878	0.0067809	3.6059E-06	-0.21627	-0.000115	-0.20948	-0.0001114	531.7714998547135	24.552	0.64042	24.631	24.364	25.005	0.078344					21	13	2	0	0	0	0.6504	1	1028	1028		49.442	3.4693	1	996530			77890	8592	54357	54449	85953	85953					0.0004742693467960635
TEPRSPGRGP	10	Unmodified	_TEPRSPGRGP_					0	0	0		ENST00000320330.7_1_16:29827558-29827837:+|nuORF	ENST00000320330.7_1_16:29827558-29827837:+|nuORF	ENST00000320330.7_1_16:29827558-29827837:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7802734375	2	527.275429	1052.53631	-1.0043	-0.00052954	-1.142	-0.00060212	-2.1463	-0.0011317	527.2721570269189	82.152	1.4219	82.152	81.63	83.051	0					82	33	5	0	0	0	0.80817	1	10239	10239		60.118	4.6141	1	6569100			77891	12191	54358	54450	85954	85954					0.012139025266151293
TEPSITFLGK	10	Unmodified	_TEPSITFLGK_					0	0	0			REV__ENSG00000156453|ENST00000287008|PCDH1	REV__ENSG00000156453|ENST00000287008|PCDH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2977905273438	2	546.800414	1091.58628	-0.78076	-0.00042692	-3.0186	-0.0016506	-3.7993	-0.0020775	546.8001018608082	55.029	0.76197	54.883	54.459	55.221	-0.14609					26	15	3	0	0	0	0.03519	1	5939	5939		42.396	0	1	783390	+		77892	25076	54359	54451	85955	85955					0.04414592411899321
TEPSQYYA	8	Unmodified	_TEPSQYYA_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7357177734375	2	479.711265	957.407977	-0.63076	-0.00030258	-1.1613	-0.00055708	-1.792	-0.00085967	479.71049046113677	60.387	0.28207	60.211	59.998	60.28	-0.1761					11	6	2	0	0	0	0.027866	1	6716	6716		44.117	8.9648	1	56027	+		77893	26319	54360	54452	85956	85956					-0.0724307750714388
TEPTPPPF	8	Unmodified	_TEPTPPPF_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.7348937988281	2	443.221268	884.427984	0.10727	4.7543E-05	-2.7616	-0.001224	-2.6543	-0.0011764	443.2199348362986	23.286	0.78983	23.084	22.733	23.523	-0.20193					31	17	2	0	0	0	0.027866	1	966	966		65.897	13.598	1	552430			77894	5229	54361	54453	85957	85957					-0.018852817765150576
TEPTYSQKRY	10	Unmodified	_TEPTYSQKRY_					0	0	0		ENST00000417549.1_1_13:28788954-28789521:+|nuORF	ENST00000417549.1_1_13:28788954-28789521:+|nuORF	ENST00000417549.1_1_13:28788954-28789521:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.9131774902344	3	424.878815	1271.61462	-0.73069	-0.00031045	3.2612	0.0013856	2.5305	0.0010751	425.2151058288197	39.073	0.14028	38.974	38.914	39.054	-0.098755					5	3	2	0	0	0	0.03519	1	3307	3307		25.126	0	1	40245			77895	13917	54362	54454	85958	85958					-0.010327096787932533
TEPVILNL	8	Unmodified	_TEPVILNL_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.779296875	2	449.765843	897.517133	0.37082	0.00016678	0.2269	0.00010205	0.59772	0.00026883	449.76569311327046	68.553	0.58166	68.26	67.936	68.517	-0.29267					18	14	2	0	0	0	0.027866	1	8157	8157		57.811	9.8957	1	157700			77896	4071	54363	54455	85959	85959					0.06427553183004875
TEPVLESLDTE	11	Unmodified	_TEPVLESLDTE_					0	0	0		ENST00000445995.2_1_9:98056039-98057089:+|nuORF	ENST00000445995.2_1_9:98056039-98057089:+|nuORF	ENST00000445995.2_1_9:98056039-98057089:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5611572265625	3	411.534602	1231.58198	0.13412	5.5193E-05	-0.97106	-0.00039962	-0.83694	-0.00034443	411.53421661221154	20.36	0.73015	20.192	19.909	20.639	-0.16774					34	14	3	0	0	0	0.02473	1	578	578		21.032	0.19508	1	210770			77897	14447	54364	54456	85960	85960					-0.024549615923206147
TEPVYYEV	8	Unmodified	_TEPVYYEV_					0	0	0			REV__ENSG00000167487|ENST00000300976|KLHL26	REV__ENSG00000167487|ENST00000300976|KLHL26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.2073974609375	2	500.237116	998.459678	-1.0461	-0.00052331	3.8804	0.0019411	2.8342	0.0014178	500.2405461777034	43.928	0.23386	43.683	43.556	43.79	-0.2444					7	5	2	0	0	0	0.027866	1	4036	4036		44.117	8.4985	1	71659	+		77898	26145	54365	54457	85961	85961					-0.03961333813231249
TEQFDRLT	8	Unmodified	_TEQFDRLT_					0	0	0			REV__ENST00000412609.5_1_19:40175935-40176240:+|nuORF	REV__ENST00000412609.5_1_19:40175935-40176240:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.7140197753906	2	505.251089	1008.48762	-0.66692	-0.00033696	0.86076	0.0004349	0.19384	9.7937E-05	505.25155758611976	28.77	0.59345	28.62	28.362	28.955	-0.15038					29	13	3	0	0	0	0.027866	1	1711	1711		21.96	1.013	1	207980	+		77899	32003	54366	54458	85962	85962					-0.016280108331443444
TEQHALLQD	9	Unmodified	_TEQHALLQD_					0	0	0		ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.7741088867188	2	527.76182	1053.50909	-1.1533	-0.00060866	-3.0036	-0.0015852	-4.1568	-0.0021938	527.7599833521572	80.611	1.4669	80.611	80.163	81.63	0					67	35	4	0	0	0	0.024261	1	10001	10001		64.207	16.55	1	1238500			77900	4743	54367	54459	85963	85963					-0.015526258044474162
TEQKPALN	8	Unmodified	_TEQKPALN_					0	0	0			REV__CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;REV__ENSG00000124177|ENST00000373233|CHD6	REV__CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2685852050781	2	450.742899	899.471246	-0.18651	-8.4068E-05	0.19619	8.8433E-05	0.009684	4.365E-06	450.7429367047708	48.892	0.78506	48.739	48.433	49.218	-0.15277					32	21	2	0	0	0	0.027866	1	5048	5048		60.972	16.855	1	509810	+		77901	19308;22741	54368	54460	85964	85964					0.017489080007521807
TEQKTSLL	8	Unmodified	_TEQKTSLL_					0	0	0			REV__ZNF567|p.H253Tfs*5|1|0.5|ENSG00000189042|chr19:36719472-36719473|-/A|frameshift_variant	REV__ZNF567|p.H253Tfs*5|1|0.5|ENSG00000189042|chr19:36719472-36719473|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.22216796875	2	460.258382	918.502212	0.011742	5.4045E-06	-1.0192	-0.00046907	-1.0074	-0.00046367	460.25771568813826	42.48	0.34258	42.348	42.149	42.491	-0.13219					11	9	2	0	0	0	0.027866	1	3903	3903		26.796	2.5934	1	51219	+		77902	28087	54369	54461	85965	85965					0.03970061315010298
TEQLVDYM	8	Unmodified	_TEQLVDYM_					0	0	0			REV__ENSG00000149488|ENST00000358864|TMC2	REV__ENSG00000149488|ENST00000358864|TMC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.71624755859375	2	499.7286	997.442648	0.17127	8.559E-05	-0.26068	-0.00013027	-0.089408	-4.468E-05	499.72834628502767	71.51	0.54445	71.235	70.967	71.511	-0.2751					23	12	3	0	0	0	0.027866	1	8332	8332		47.916	0	1	346290	+		77903	24681	54370	54462	85966	85966					-0.05617577690691178
TEQNSYSNI	9	Unmodified	_TEQNSYSNI_					0	0	0		nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000204352|Q5T035|FAM120A2P;nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	nc|ENSG00000048828|Q9NZB2-4|FAM120A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.815185546875	2	528.235635	1054.45672	-1.1765	-0.00062146	0.87467	0.00046203	-0.30182	-0.00015943	528.7369715876716	43.803	0.28004	43.658	43.534	43.814	-0.14471					10	7	2	0	0	0	0.024466	1	4119	4119		18.262	0	1	60475			77904	1121	54371	54463	85967	85967					-0.06833208938064672
TEQSKIFI	8	Unmodified	_TEQSKIFI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2691650390625	2	483.26875	964.522947	0.73448	0.00035495	-0.43749	-0.00021142	0.29699	0.00014353	483.26860464900534	83.199	1.5415	83.108	82.787	84.328	-0.090454					96	35	5	0	0	0	0.43637	1	10390	10390		92.191	0	1	10385000			77905	10401	54372	54464	85968	85968					0.039266516946554475
TEQTELLAS	9	Unmodified	_TEQTELLAS_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.253662109375	2	496.250754	990.486955	0.2499	0.00012401	0.80851	0.00040122	1.0584	0.00052524	496.250995828097	77.186	0.40166	76.92	76.597	76.998	-0.26631					16	9	2	0	0	0	0.82115	1	9167	9167		37.812	3.639	1	354110			77906	5056	54373	54465	85969	85969					-0.008668502728482963
TEQVTNLDI	9	Unmodified	_TEQVTNLDI_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.7625122070312	2	516.764029	1031.5135	-0.14389	-7.4359E-05	0.13966	7.2172E-05	-0.0042313	-2.1866E-06	516.7639215055955	67.694	0.79282	67.406	67.069	67.861	-0.28834					45	19	3	0	0	0	0.03666	1	8049	8049		136.27	17.525	1	1745500	+		77907	34932	54374	54466	85970	85970					-0.0009916138151311316
TERAHRLF	8	Unmodified	_TERAHRLF_					0	0	0			REV__nc|ENSG00000157168|Q02297-12|NRG1	REV__nc|ENSG00000157168|Q02297-12|NRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.31103515625	2	515.283057	1028.55156	-0.43382	-0.00022354	-0.95801	-0.00049365	-1.3918	-0.00071719	515.2823528940957	78.385	0.99313	78.385	78.042	79.035	0					49	23	3	0	0	0	0.027866	1	9750	9750		8.2313	0.54101	1	824750	+		77908	25117	54375	54467	85971	85971					0.038428141144549954
TERAHRLF	8	Unmodified	_TERAHRLF_					0	0	0			REV__nc|ENSG00000157168|Q02297-12|NRG1	REV__nc|ENSG00000157168|Q02297-12|NRG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.283057	1028.55156	0.34487	0.0001777	-1.6801	-0.00086571	-1.3352	-0.00068801	515.281981595499	78.565	1.3619	78.372	77.975	79.337	-0.1921	0.092067	-8.6245E-05	NaN	8.2313	56	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747870	+		77909	25117	54375	54467							0.038428141144549954
TERAHRLF	8	Unmodified	_TERAHRLF_					0	0	0			REV__nc|ENSG00000157168|Q02297-12|NRG1	REV__nc|ENSG00000157168|Q02297-12|NRG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.283057	1028.55156	-0.72254	-0.00037231	-0.78306	-0.0004035	-1.5056	-0.00077581	515.2825067942417	78.434	0.61754	78.45	78.114	78.732	0.015907	0.16922	0.00083818	NaN	8.2313	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789470	+		77910	25117	54375	54467							0.038428141144549954
TERAHRLF	8	Unmodified	_TERAHRLF_					0	0	0			REV__nc|ENSG00000157168|Q02297-12|NRG1	REV__nc|ENSG00000157168|Q02297-12|NRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.283057	1028.55156	0.50572	0.00026059	-8.0651	-0.0041558	-7.5594	-0.0038952	515.2789852519251	78.265	0.50908	78.033	77.709	78.218	-0.23141	-0.24698	-0.0066664	NaN	8.2313	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138690	+		77911	25117	54375	54467							0.038428141144549954
TERAHRLF	8	Unmodified	_TERAHRLF_					0	0	0			REV__nc|ENSG00000157168|Q02297-12|NRG1	REV__nc|ENSG00000157168|Q02297-12|NRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.283057	1028.55156	0.039658	2.0435E-05	-1.9015	-0.00097981	-1.8618	-0.00095938	515.2820242720951	78.318	0.85722	78.162	77.7	78.557	-0.15591	-0.1187	-0.00031445	NaN	8.2313	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350570	+		77912	25117	54375	54467							0.038428141144549954
TERDKNQS	8	Unmodified	_TERDKNQS_					0	0	0		nc|ENSG00000135930|O60573-2|EIF4E2;ENST00000498242.5_1_2:233415434-233422740:+|nuORF;ENSG00000135930|ENST00000258416|EIF4E2	nc|ENSG00000135930|O60573-2|EIF4E2	nc|ENSG00000135930|O60573-2|EIF4E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7645568847656	2	489.23597	976.457387	-0.43106	-0.00021089	3.2221	0.0015764	2.791	0.0013655	489.2382056688202	43.132	0.48391	43.02	42.735	43.218	-0.11253					28	12	3	0	0	0	0.027866	1	3943	3943		23.042	3.6825	1	187060			77913	18301	54376	54468	85972	85972					-0.031783694983232635
TERHLTYVE	9	Unmodified	_TERHLTYVE_					0	0	0			REV__ENSG00000175305|ENST00000308108|CCNE2	REV__ENSG00000175305|ENST00000308108|CCNE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.3131713867188	2	574.290745	1146.56694	-1.0307	-0.0005919	3.9617	0.0022752	2.931	0.0016833	574.292928754461	27.787	2.9975	27.869	26.29	29.287	0.081293					163	75	3	0	0	0	0.024495	1	1442	1442		19.997	0	1	848010	+		77914	26938	54377	54469	85973	85973					-0.00048363879000135057
TERKKEYIF	9	Unmodified	_TERKKEYIF_					0	0	0		ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	607.77880859375	2	607.332413	1212.65027	-0.26848	-0.00016306	0.69346	0.00042116	0.42498	0.0002581	607.3323320047012	71.945	0.44743	71.739	71.536	71.984	-0.20613					19	10	2	0	0	0	0.024539	1	8393	8393		35.618	18.15	1	69749			77915	16555	54378	54470	85974	85974					0.05245372568833773
TERPSLREER	10	Unmodified	_TERPSLREER_					0	0	0			REV__nc|ENSG00000146112|Q6NYC8-2|PPP1R18	REV__nc|ENSG00000146112|Q6NYC8-2|PPP1R18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.74835205078125	3	424.893347	1271.65821	-0.54402	-0.00023115	0.6014	0.00025553	0.057375	2.4378E-05	424.8936003098036	26.573	0.93295	26.55	26.124	27.057	-0.023088					64	22	5	0	0	0	0.03519	1	1312	1312		38.714	4.6276	1	1825500	+		77916	24462	54379	54471	85975	85975					0.03324899818312588
TERTHIENI	9	Unmodified	_TERTHIENI_					0	0	0		ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1;ENSG00000185775|ENST00000332857|SPATA31A6	ENSG00000276581|ENST00000437823|SPATA31A5	ENSG00000276581|ENST00000437823|SPATA31A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	556.807861328125	2	556.78837	1111.56219	-1.7285	-0.0009624	-1.7102	-0.00095223	-3.4387	-0.0019146	556.7878719133221	65.038	0.18739	64.776	64.686	64.873	-0.2626					7	4	2	0	0	0	0.024541	1	7647	7647		19.997	0	1	107250			77917	10382	54380	54472	85976	85976					0.010867519782550517
TESALRVTF	9	Unmodified	_TESALRVTF_					0	0	0			REV__nc|ENSG00000114770|O15440-5|ABCC5	REV__nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2810974121094	2	512.277106	1022.53966	0.16448	8.4258E-05	-0.69961	-0.00035839	-0.53513	-0.00027413	512.2767663175738	61.52	1.0142	61.293	60.86	61.874	-0.22663					68	26	4	0	0	0	0.024427	1	7099	7099		34.173	0	1	2054300	+		77918	22142	54381	54473	85977	85977					0.0292915258062294
TESATRVMVST	11	Oxidation (M)	_TESATRVM(Oxidation (M))VST_		TESATRVM(1)VST		TESATRVM(46)VST	0	0	1			REV__SDK1|p.T1181M|1|0.12|ENSG00000146555|chr7:4113396-4113396|C/T|missense_variant	REV__SDK1|p.T1181M|1|0.12|ENSG00000146555|chr7:4113396-4113396|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.292236328125	2	599.292627	1196.5707	-0.39538	-0.00023695	-0.33936	-0.00020338	-0.73474	-0.00044032	599.2923724843762	46.837	1.2331	46.74	46.152	47.385	-0.096653					87	33	5	0	0	0	0.95664	1	4537	4537		46.457	7.2039	1	4722400	+		77919	37469	54382	54474	85978	85978		988			-0.01972062167465083
TESDSSYID	9	Unmodified	_TESDSSYID_					0	0	0			REV__TLE3-THAP10|1|fusion	REV__TLE3-THAP10|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3023376464844	2	508.706377	1015.3982	-0.18485	-9.4034E-05	3.0791	0.0015664	2.8943	0.0014723	508.70782972560323	55.57	1.034	55.414	54.888	55.922	-0.15601					58	28	4	0	0	0	0.024021	1	6182	6182		68.787	15.435	1	1240400	+		77920	23027	54383	54475	85979	85979					-0.10888310303164417
TESLHQADLEA	11	Unmodified	_TESLHQADLEA_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	606.8333129882812	2	607.288399	1212.56225	-0.4669	-0.00028354	-1.4787	-0.000898	-1.9456	-0.0011815	607.7878442098817	54.988	0.39146	54.838	54.641	55.033	-0.15036					13	10	2	0	0	0	0.024775	1	6011	6011		54.722	16.911	1	138870	+		77921	23500	54384	54476	85980	85980					-0.03553292812443942
TESMLNAKL	9	Unmodified	_TESMLNAKL_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7632141113281	2	503.765517	1005.51648	-0.38674	-0.00019482	0.63436	0.00031957	0.24762	0.00012474	503.76586279159443	31.256	0.78323	31.268	30.999	31.782	0.011797					48	18	3	0	0	0	0.53979	1	2069	2069		56.721	1.9447	1	1377100	+		77922	24254	54385	54477	85981	85981					0.013943904716256839
TESPALIPPRK	11	Unmodified	_TESPALIPPRK_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.5706787109375	3	403.571434	1207.69247	-0.0039062	-1.5764E-06	1.0511	0.00042419	1.0472	0.00042262	403.90622468770425	30.155	0.53574	30.163	30.002	30.538	0.0086708					18	12	2	0	0	0	0.024735	1	1906	1906		34.087	16.92	1	69549	+		77923	21631	54386	54478	85982	85982					0.09693347977213307
TESPIKDL	8	Unmodified	_TESPIKDL_					0	0	0			REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.231689453125	2	451.745108	901.475663	-0.34103	-0.00015406	2.3962	0.0010825	2.0551	0.00092839	451.74593571061513	35.895	0.75694	35.939	35.658	36.415	0.044056					34	20	2	0	0	0	0.027866	1	2744	2744		40.778	0	1	398200	+		77924	24720	54387	54479	85983	85983					0.02098372423665751
TESPIKDL	8	Unmodified	_TESPIKDL_					0	0	0			REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.745108	901.475663	-0.092158	-4.1632E-05	1.4062	0.00063526	1.3141	0.00059362	451.745813023449	35.908	0.48226	35.691	35.43	35.913	-0.21661	-0.11183	-0.00044607	NaN	58.782	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606170	+		77925	24720	54387	54479							0.02098372423665751
TESPIKDL	8	Unmodified	_TESPIKDL_					0	0	0			REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	REV__nc|ENSG00000150477|Q86T90-2|KIAA1328	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.745108	901.475663	0.2184	9.8659E-05	1.4945	0.00067513	1.7129	0.00077379	451.74576322298395	35.85	0.43937	35.652	35.403	35.843	-0.19829	-0.15121	-0.00036633	NaN	58.782	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428580	+		77926	24720	54387	54479							0.02098372423665751
TESRSVPQ	8	Unmodified	_TESRSVPQ_					0	0	0		ENST00000367188.4_1_1:204373408-204373672:-|nuORF	ENST00000367188.4_1_1:204373408-204373672:-|nuORF	ENST00000367188.4_1_1:204373408-204373672:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.22845458984375	2	452.230156	902.445759	-0.096225	-4.3516E-05	-4.2089	-0.0019034	-4.3051	-0.0019469	452.2283213741261	102.93	1.6273	102.8	102.45	104.08	-0.12783					71	39	4	0	0	0	0.97794	1	12817	12817		40.778	1.5253	1	4172900			77927	12847	54388	54480	85984	85984					-0.009365665216591879
TETAPLVVV	9	Unmodified	_TETAPLVVV_					0	0	0		ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR	ENSG00000124275|ENST00000440940|MTRR	ENSG00000124275|ENST00000440940|MTRR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2972717285156	2	464.771126	927.527698	-0.39012	-0.00018132	1.1158	0.00051858	0.72567	0.00033727	464.7710069808137	85.035	0.41222	84.977	84.774	85.186	-0.05761					16	9	2	0	0	0	0.024354	1	10620	10620		38.806	4.6336	1	115940			77928	4039	54389	54481	85985	85985					0.06103535837428353
TETAPLVVV	9	Unmodified	_TETAPLVVV_					0	0	0		ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR	ENSG00000124275|ENST00000440940|MTRR	ENSG00000124275|ENST00000440940|MTRR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.771126	927.527698	0.34315	0.00015949	-5.7539	-0.0026742	-5.4107	-0.0025147	464.7687936136094	85.417	0.3383	85.279	85.155	85.493	-0.13753	0.15115	-0.0044098	NaN	38.806	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57439			77929	4039	54389	54481							0.06103535837428353
TETAVIRLMK	10	Unmodified	_TETAVIRLMK_					0	0	0		ENST00000482866.5_1_7:76941390-76943837:-|nuORF;ENST00000474686.5_1_7:76940677-76943837:-|nuORF;nc|ENSG00000186088|A4D1B5-4|GSAP;ENSG00000186088|ENST00000257626|GSAP	ENST00000482866.5_1_7:76941390-76943837:-|nuORF	ENST00000482866.5_1_7:76941390-76943837:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	581.30419921875	2	581.336641	1160.65873	-1.2484	-0.00072575	-4.4143	-0.0025662	-5.6627	-0.0032919	581.3340137379804	30.099	0.61687	30.108	29.797	30.414	0.0086689					34	14	3	0	0	0	0.03519	1	1930	1930		49.442	0	1	334420			77930	9510	54390	54482	85986	85986					0.08482603213792572
TETEVLLL	8	Unmodified	_TETEVLLL_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.26373291015625	2	459.263133	916.511714	-0.50369	-0.00023133	1.6242	0.00074595	1.1205	0.00051463	459.2638240978538	42.189	1.2989	41.958	41.546	42.845	-0.23186					112	34	5	0	0	0	0.48546	1	3751	3751		86.935	12.418	1	12143000			77931	1753	54391	54483	85987	85987					0.05011829600528017
TETFSMEVT	9	Unmodified	_TETFSMEVT_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7379760742188	2	522.73134	1043.44813	-1.4289	-0.00074691	4.2944	0.0022448	2.8656	0.0014979	522.7331315520439	62.005	0.24804	62.005	61.832	62.08	0					10	6	2	0	0	0	0.024205	1	7181	7181		35.618	0	1	103620			77932	10291	54392	54484	85988	85988					-0.07185898898865162
TETFSRLPARQ	11	Unmodified	_TETFSRLPARQ_					0	0	0			REV__ENSG00000166855|ENST00000300107|CLPX	REV__ENSG00000166855|ENST00000300107|CLPX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.24737548828125	3	435.901843	1304.6837	-0.84601	-0.00036878	-1.1967	-0.00052164	-2.0427	-0.00089041	436.23584907409486	35.298	0.11172	35.277	35.196	35.308	-0.021767					4	2	2	0	0	0	0.024759	1	2690	2690		36.318	9.2703	1	32273	+		77933	26065	54393	54485	85989	85989					0.04354374340755385
TETILKTR	8	Unmodified	_TETILKTR_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1;ENSG00000130558|ENST00000371793|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2867736816406	2	481.287474	960.560395	2.5449	0.0012248	-4.1006	-0.0019736	-1.5557	-0.00074876	481.28542370874004	18.557	0.39138	18.557	18.382	18.774	0					16	7	3	0	0	0	1.043	1	303	303		30.504	1.3336	1	77966			77934	18267	54394	54486	85990	85990					0.07853742960287491
TETIMFAIN	9	Unmodified	_TETIMFAIN_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2918090820312	2	520.260068	1038.50558	-0.21196	-0.00011027	4.2371	0.0022044	4.0252	0.0020941	520.2615726569998	73.056	0.68476	73.066	72.57	73.255	0.0096512					38	16	3	0	0	0	0.024374	1	8826	8826		32.812	9.7699	1	387260	+		77935	22540	54395	54487	85991	85991					-0.012130119026551256
TETLEKVSI	9	Unmodified	_TETLEKVSI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2808532714844	2	510.284597	1018.55464	-0.23334	-0.00011907	-3.8167	-0.0019476	-4.05	-0.0020667	510.28266200220463	97.848	0.91312	97.683	96.991	97.904	-0.1652					37	20	2	0	0	0	0.56934	1	12076	12076		54.776	3.4409	1	283010			77936	18548	54396	54488	85992	85992					0.04610599657962666
TETPPTTQP	9	Unmodified	_TETPPTTQP_					0	0	0		ENSG00000272391|ENST00000615331|POM121C;nc|ENSG00000272391|A8CG34|POM121C	ENSG00000272391|ENST00000615331|POM121C	ENSG00000272391|ENST00000615331|POM121C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.8062438964844	2	486.237647	970.460741	-1.2621	-0.00061369	1.6541	0.00080428	0.39197	0.00019059	486.23849220593155	34.361	0.66927	34.411	34.131	34.8	0.050255					24	16	2	0	0	0	0.024261	1	2486	2486		64.207	14.766	1	142850			77937	11014	54397	54489	85993	85993					-0.025671194443361856
TETRSKSFDY	10	Unmodified	_TETRSKSFDY_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	616.75	2	617.290942	1232.56733	-1.0853	-0.00066994	-0.0067986	-4.1967E-06	-1.0921	-0.00067413	617.2905545001842	48.157	0.32759	48.059	47.929	48.257	-0.097553					10	8	2	0	0	0	0.03519	1	4790	4790		127.46	31.428	1	152420			77938	4229	54398	54490	85994	85994					-0.03964988949792314
TETRSKSFDY	10	Unmodified	_TETRSKSFDY_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	616.7498168945312	2	617.290942	1232.56733	-1.3321	-0.00082231	1.5576	0.00096151	0.22551	0.0001392	617.2919774856204	48.908	0.39605	48.628	48.429	48.825	-0.27977					16	10	2	0	0	0	0.03519	1	4870	4870		98.629	0	1	158680			77939	4229	54398	54490	85995	85995					-0.03964988949792314
TETWLLSK	8	Unmodified	_TETWLLSK_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2868347167969	2	489.26875	976.522947	0.05759	2.8177E-05	0.64153	0.00031388	0.69912	0.00034206	489.2690856410139	91.323	1.942	91.335	91.033	92.975	0.011276					70	46	3	0	0	0	0.027866	1	11671	11671		0.90815	0	1	574220	+		77940	23857	54399	54491	85996	85996					0.03374651694662134
TEVHMAGYVNN	11	Unmodified	_TEVHMAGYVNN_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5611572265625	3	412.188884	1233.54482	0.16301	6.7192E-05	-1.04	-0.00042868	-0.87698	-0.00036148	412.18866889253366	20.538	0.53764	20.37	20.246	20.784	-0.16774					12	10	2	0	0	0	0.024748	1	578	578		24.232	8.225	1	19590	+		77941	23269	54400	54492	85997	85997					-0.06260911619051512
TEVHMAGYVNN	11	Unmodified	_TEVHMAGYVNN_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	412.188884	1233.54482	0.72684	0.0002996	-1.2574	-0.00051828	-0.53055	-0.00021868	412.18773425723236	20.681	0.3938	20.485	20.385	20.779	-0.19577	0.057605	-0.00018016	NaN	24.232	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12172	+		77942	23269	54400	54492							-0.06260911619051512
TEVKRPKTVRH	11	Unmodified	_TEVKRPKTVRH_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000478688.1_1_3:49849182-49849886:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.2471923828125	3	450.936999	1349.78917	0.26569	0.00011981	-0.8018	-0.00036156	-0.53611	-0.00024175	450.93653266303227	24.25	0.17938	24.035	23.909	24.089	-0.2151					5	3	2	0	0	0	0.024846	1	1026	1026		11.932	5.9313	1	13267			77943	9110	54401	54493	85998	85998					0.1282633525700021
TEVLDFCTL	9	Unmodified	_TEVLDFCTL_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7640380859375	2	520.752075	1039.4896	-1.0262	-0.00053438	-1.9987	-0.0010409	-3.0249	-0.0015752	520.7509872612379	84.158	0.55931	84.085	83.787	84.346	-0.072769					22	12	2	0	0	0	0.024477	1	10471	10471		35.618	11.416	1	219190			77944	1690;37967	54402	54494	85999	85999					-0.028567181395374064
TEVLDTNWV	9	Unmodified	_TEVLDTNWV_					0	0	0			REV__ENST00000515467.2_1_5:1572396-1576767:-|nuORF	REV__ENST00000515467.2_1_5:1572396-1576767:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.7667236328125	2	538.766571	1075.51859	-1.128	-0.00060773	1.4754	0.00079492	0.34744	0.00018719	538.7673375791759	83.393	0.90207	83.393	83.051	83.954	0					48	20	3	0	0	0	0.2508	2	10416	10416;10427		82.241	7.1972	1	1380200	+		77945	20501	54403	54495	86000;86001	86000					-0.016148575188935865
TEVLNQESL	9	Unmodified	_TEVLNQESL_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000188107|ENST00000503581|EYS;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.7634887695312	2	516.764029	1031.5135	-0.3897	-0.00020138	0.43109	0.00022277	0.041399	2.1394E-05	516.764072415291	67.417	0.81989	67.441	67.152	67.972	0.023903					44	20	3	0	0	0	0.32811	1	7976	7976		71.877	0	1	1786400			77946	17687;9692	54404	54496	86002	86002					-0.0009916138151311316
TEVLTVGQV	9	Unmodified	_TEVLTVGQV_					0	0	0		ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.76885986328125	2	473.266207	944.517862	0.70069	0.00033161	0.042992	2.0347E-05	0.74369	0.00035196	473.26609049506885	75.711	0.68678	75.722	75.365	76.051	0.011635					49	18	4	0	0	0	0.024354	1	9272	9272		38.806	1.647	1	2264100			77947	10958	54405	54497	86003	86003					0.04338347832060663
TEVPLLLGAL	10	Unmodified	_TEVPLLLGAL_					0	0	0			REV__chr6:31119733-31120335|108|16.07|0.18|6.48|-|2|None,CDSN|1	REV__chr6:31119733-31120335|108|16.07|0.18|6.48|-|2|None,CDSN|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2635498046875	2	513.3157	1024.61685	-0.08216	-4.2174E-05	1.7211	0.00088349	1.639	0.00084132	513.3164321004294	48.409	1.1307	48.222	47.825	48.955	-0.18684					41	30	2	0	0	0	0.03519	1	4728	4728		16.473	8.7829	1	444440	+		77948	19454	54406	54498	86004	86004					0.10552370796949617
TEVVRSGH	8	Unmodified	_TEVVRSGH_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.7348327636719	2	442.732866	883.451179	2.0725	0.00091755	2.5922	0.0011477	4.6647	0.0020652	442.7338704574741	23.459	1.7702	23.268	22.942	24.713	-0.19117					121	40	6	0	0	0	0.6248	3	886	886;910;924		73.975	24.533	1	7639300			77949	3670	54407	54499	86005;86006;86007	86005					0.0047915706081766984
TEWFSAPR	8	Unmodified	_TEWFSAPR_					0	0	0			REV__nc|ENSG00000105976|P08581-2|MET	REV__nc|ENSG00000105976|P08581-2|MET	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.26861572265625	2	497.243067	992.47158	0.30459	0.00015145	-3.4262	-0.0017037	-3.1216	-0.0015522	497.2406539285334	36.552	0.6584	36.552	36.229	36.887	0					29	17	3	0	0	0	0.027866	1	2881	2881		49.442	5.3247	1	199640	+		77950	21583	54408	54500	86008	86008					-0.024956722793831432
TEWLQKPLPK	10	Unmodified	_TEWLQKPLPK_					0	0	0			REV__nc|ENSG00000140577|Q6UUV7-3|CRTC3	REV__nc|ENSG00000140577|Q6UUV7-3|CRTC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7430725097656	3	413.908046	1238.70231	-0.56174	-0.00023251	-3.1504	-0.001304	-3.7122	-0.0015365	413.9067549893314	37.814	0.54243	37.847	37.45	37.992	0.032269					34	14	3	0	0	0	0.03519	1	2995	2995		3.6191	0	1	201220	+		77951	24033	54409	54501	86009	86009					0.09250535982596375
TEWQEQIASL	10	Unmodified	_TEWQEQIASL_					0	0	0			REV__nc|ENSG00000162852|Q6PJW8-2|CNST	REV__nc|ENSG00000162852|Q6PJW8-2|CNST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.9118347167969	3	402.199666	1203.57717	-0.20766	-8.352E-05	-1.437	-0.00057794	-1.6446	-0.00066146	402.19879597901047	20.396	0.63555	20.172	19.779	20.415	-0.22344					32	12	4	0	0	0	0.03519	1	516	516		19.263	9.1588	1	104390	+		77952	25497	54410	54502	86010	86010					-0.016478009444199415
TEWVVKEPFGF	11	Unmodified	_TEWVVKEPFGF_					0	0	0			REV__ENST00000543103.1_1_16:57115217-57116437:+|nuORF	REV__ENST00000543103.1_1_16:57115217-57116437:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	445.9710693359375	3	446.895806	1337.66559	-0.50743	-0.00022677	-2.6999	-0.0012066	-3.2074	-0.0014334	446.89461440882013	39.48	0.61729	39.257	38.926	39.543	-0.22311					37	15	4	0	0	0	0.024771	1	3307	3307		41.08	15.188	1	280480	+		77953	34800	54411	54503	86011	86011					0.01026239366046866
TEWVVKEPFGF	11	Unmodified	_TEWVVKEPFGF_					0	0	0			REV__ENST00000543103.1_1_16:57115217-57116437:+|nuORF	REV__ENST00000543103.1_1_16:57115217-57116437:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	446.895806	1337.66559	-0.51565	-0.00023044	-2.3512	-0.0010508	-2.8669	-0.0012812	446.89462011464417	39.329	0.48463	39.165	38.934	39.419	-0.16458	-0.054506	0.0002866	NaN	41.08	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323930	+		77954	34800	54411	54503							0.01026239366046866
TEWVVKEPFGF	11	Unmodified	_TEWVVKEPFGF_					0	0	0			REV__ENST00000543103.1_1_16:57115217-57116437:+|nuORF	REV__ENST00000543103.1_1_16:57115217-57116437:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	446.895806	1337.66559	0.074925	3.3484E-05	-2.6927	-0.0012034	-2.6178	-0.0011699	446.8943807284557	39.462	0.5261	39.236	38.946	39.472	-0.2257	0.01715	-0.00017125	NaN	41.08	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247260	+		77955	34800	54411	54503							0.01026239366046866
TEYSTHQLF	9	Unmodified	_TEYSTHQLF_					0	0	0		ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.7880249023438	2	563.264196	1124.51384	-0.781	-0.00043991	2.0399	0.001149	1.2589	0.00070909	563.26647351722	30.178	0.21644	30	29.866	30.083	-0.17817					6	4	2	0	0	0	0.024541	1	1903	1903		30.504	7.4612	1	32562			77956	8192	54412	54504	86012	86012					-0.04343741661659806
TEYYPLGL	8	Unmodified	_TEYYPLGL_					0	0	0			REV__ENSG00000072422|ENST00000337910|RHOBTB1	REV__ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.2771301269531	2	478.242201	954.469849	0.36905	0.00017649	0.24523	0.00011728	0.61428	0.00029377	478.24227981271673	75.027	0.47684	75.027	74.717	75.194	0					17	11	2	0	0	0	0.027866	1	9205	9205		33.516	0	1	144080	+		77957	20472	54413	54505	86013	86013					-0.009207260880089052
TFAAGIRLD	9	Unmodified	_TFAAGIRLD_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2885437011719	2	482.266542	962.51853	0.59765	0.00028823	-1.064	-0.00051314	-0.46637	-0.00022492	482.2658039575328	63.413	1.0426	63.413	63.09	64.133	0					57	28	3	0	0	0	0.02435	1	7369	7369		19.997	0	1	1138200	+		77958	27102	54414	54506	86014	86014					0.03577187271753246
TFAGLVLVGL	10	Unmodified	_TFAGLVLVGL_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7870178222656	2	495.305136	988.595718	-1.2686	-0.00062833	-3.2711	-0.0016202	-4.5397	-0.0022485	495.30334551630614	65.164	0.87894	64.902	64.494	65.372	-0.2626					68	23	4	0	0	0	0.03519	1	7662	7662		53.351	0	1	2720400			77959	5331	54415	54507	86015	86015					0.10096405488093296
TFAKPLVK	8	Unmodified	_TFAKPLVK_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2862854003906	2	452.286746	902.558939	-0.62584	-0.00028306	-4.222	-0.0019096	-4.8479	-0.0021926	452.28470293783954	33.032	0.39845	32.867	32.679	33.077	-0.16565					19	9	3	0	0	0	0.027866	1	2285	2285		12.207	4.5166	1	111360			77960	3413	54416	54508	86016	86016					0.10376153662184606
TFAQASRTYDW	11	Unmodified	_TFAQASRTYDW_					0	0	0			REV__ENST00000533499.1_1_11:62560034-62562480:-|nuORF;REV__ENSG00000162231|ENST00000294172|NXF1	REV__ENSG00000162231|ENST00000294172|NXF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.235107421875	3	449.210565	1344.60986	0.028067	1.2608E-05	-3.1825	-0.0014296	-3.1545	-0.001417	449.20906990232737	26.491	0.61962	26.491	26.163	26.783	0					26	14	2	0	0	0	0.02476	1	1379	1379		25.892	0	1	127180	+		77961	34607;25421	54417	54509	86017	86017					-0.048655938215688366
TFAQASRTYDW	11	Unmodified	_TFAQASRTYDW_					0	0	0			REV__ENST00000533499.1_1_11:62560034-62562480:-|nuORF;REV__ENSG00000162231|ENST00000294172|NXF1	REV__ENSG00000162231|ENST00000294172|NXF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2352294921875	3	449.210565	1344.60986	-0.25152	-0.00011298	-3.0363	-0.0013639	-3.2878	-0.0014769	449.2091390314317	26.551	0.82241	26.528	25.954	26.776	-0.023088					31	19	3	0	0	0	0.024759	1	1357	1357		23.378	0	1	108050	+		77962	34607;25421	54417	54509	86018	86018					-0.048655938215688366
TFASLVAVYV	10	Unmodified	_TFASLVAVYV_					0	0	0		ENSG00000003056|ENST00000000412|M6PR	ENSG00000003056|ENST00000000412|M6PR	ENSG00000003056|ENST00000000412|M6PR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.764892578125	2	535.30005	1068.58555	-0.46907	-0.00025109	-2.5871	-0.0013849	-3.0562	-0.001636	535.299296163262	90.444	0.45987	90.427	90.195	90.655	-0.016716					16	10	2	0	0	0	0.03519	1	11395	11395		23.042	0	1	56468			77963	730	54418	54510	86019	86019					0.05399797762856906
TFCGPREIH	9	Unmodified	_TFCGPREIH_					0	0	0		nc|ENSG00000262628|P47884|OR1D4;ENSG00000262628|ENST00000575751|OR1D5	nc|ENSG00000262628|P47884|OR1D4	nc|ENSG00000262628|P47884|OR1D4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.813720703125	2	530.255651	1058.49675	-0.18054	-9.5733E-05	-1.1104	-0.0005888	-1.291	-0.00068453	530.255020311804	29.547	0.58225	29.398	29.044	29.626	-0.14952					19	13	2	0	0	0	0.024412	1	1746	1746		24.203	0	1	109700			77964	10960	54419	54511	86020	86020					-0.030159407484688927
TFDAQIIKVSR	11	Unmodified	_TFDAQIIKVSR_					0	0	0			REV__nc|ENSG00000130948|P37058-2|HSD17B3	REV__nc|ENSG00000130948|P37058-2|HSD17B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	639.3631591796875	2	639.364244	1276.71394	0.20212	0.00012923	-1.61	-0.0010294	-1.4079	-0.00090017	639.3628708427515	110.2	0.60709	110.05	109.78	110.39	-0.14889					65	25	4	0	0	0	1.0748	1	13513	13513		18.262	0	1	961470	+		77965	23170	54420	54512	86021	86021					0.08664733005957714
TFDDMSATPT	10	Unmodified	_TFDDMSATPT_					0	0	0			REV__ENSG00000117971|ENST00000261751|CHRNB4	REV__ENSG00000117971|ENST00000261751|CHRNB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.2249145507812	2	543.226422	1084.43829	-0.61735	-0.00033536	4.4272	0.002405	3.8098	0.0020696	543.228810384717	57.955	0.72183	57.777	57.554	58.276	-0.17775					24	17	2	0	0	0	1.0992	1	6368	6368		32.812	3.6629	1	1513000	+		77966	22380	54421	54513	86022	86022					-0.10055086904253585
TFDKGLVFTSL	11	Unmodified	_TFDKGLVFTSL_					0	0	0			REV__ENSG00000165186|ENST00000379361|PTCHD1	REV__ENSG00000165186|ENST00000379361|PTCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.8915710449219	3	409.892173	1226.65469	-0.34386	-0.00014095	-2.4509	-0.0010046	-2.7948	-0.0011455	409.8912933252354	28.321	1.1294	28.152	27.768	28.897	-0.16897					47	26	2	0	0	0	0.9703	1	1663	1663		43.419	3.3604	1	2611000	+		77967	25852	54422	54514	86023	86023					0.05042836991765398
TFDMELTSE	9	Unmodified	_TFDMELTSE_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000491272.1_1_17:40467765-40469062:-|nuORF;ENST00000462269.1_1_17:40467765-40469390:-|nuORF;ENST00000462286.2_1_17:40467765-40467834:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.764892578125	2	536.728797	1071.44304	-0.54756	-0.00029389	1.6407	0.00088063	1.0932	0.00058673	536.7295093268688	90.552	0.62794	90.535	90.195	90.823	-0.016716					20	14	2	0	0	0	0.024541	1	11395	11395		6.7355	0	1	77071			77968	7843	54423	54515	86024	86024					-0.08982202761512781
TFDPFCYLT	9	Unmodified	_TFDPFCYLT_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.8255004882812	2	553.746793	1105.47903	0.097332	5.3897E-05	0.32533	0.00018015	0.42266	0.00023405	553.7464617948808	75.405	0.53121	75.229	74.858	75.389	-0.17548					17	12	2	0	0	0	0.024405	1	8896	8896		20.947	5.3051	1	71633			77969	3354	54424	54516	86025	86025					-0.06948700793986973
TFDSIFPAVD	10	Unmodified	_TFDSIFPAVD_					0	0	0			REV__ENSG00000184530|ENST00000329722|C6orf58	REV__ENSG00000184530|ENST00000329722|C6orf58	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.2722778320312	2	556.268947	1110.52334	0.49568	0.00027573	1.0934	0.00060821	1.5891	0.00088395	556.2690020346123	95.315	1.1039	95.319	95.053	96.156	0.0041199					34	25	2	0	0	0	0.03519	1	12137	12137		56.721	12.604	1	278550	+		77970	27678	54425	54517	86026	86026					-0.02749973376126036
TFDSLKKVL	9	Unmodified	_TFDSLKKVL_					0	0	0			REV__ENSG00000143303|ENST00000368216|METTL25B	REV__ENSG00000143303|ENST00000368216|METTL25B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.759033203125	2	525.813325	1049.6121	0.13087	6.8812E-05	-0.70922	-0.00037292	-0.57835	-0.00030411	525.8126823286225	57.319	0.80691	57.116	56.855	57.662	-0.20209					42	21	4	0	0	0	0.02435	1	6256	6256		42.396	0	1	1252800	+		77971	24221	54426	54518	86027	86027					0.08927486654192762
TFEAGPTACN	10	Unmodified	_TFEAGPTACN_					0	0	0			REV__ENST00000414613.1_1_2:61163957-61164086:-|nuORF	REV__ENST00000414613.1_1_2:61163957-61164086:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7136535644531	2	505.716024	1009.4175	-0.70271	-0.00035537	-2.83	-0.0014312	-3.5327	-0.0017865	505.7146052227197	35.152	1.2976	34.966	34.117	35.415	-0.18675					52	32	2	0	0	0	0.03519	1	2509	2509		19.997	12.306	1	102170	+		77972	32042	54427	54519	86028	86028					-0.08683632493261939
TFEALATVDP	10	Unmodified	_TFEALATVDP_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.24853515625	2	532.268947	1062.52334	-0.26024	-0.00013852	2.8857	0.001536	2.6254	0.0013974	532.2703289306809	49.446	0.64649	49.346	49.029	49.676	-0.1008					30	16	2	0	0	0	0.03519	1	4922	4922		26.693	0	1	533610	+		77973	25012	54428	54520	86029	86029					-0.005419733761300449
TFEALQKP	8	Unmodified	_TFEALQKP_					0	0	0			REV__ENSG00000230797|ENST00000429584|YY2	REV__ENSG00000230797|ENST00000429584|YY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.27197265625	2	467.255643	932.496732	0.0095576	4.4659E-06	1.2487	0.00058348	1.2583	0.00058794	467.25573487460736	36.662	0.52318	36.445	36.126	36.65	-0.21661					17	12	2	0	0	0	0.027866	1	2845	2845		18.324	0	1	88040	+		77974	28895	54429	54521	86030	86030					0.02778382523183609
TFELHVEG	8	Unmodified	_TFELHVEG_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR;REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2721252441406	2	466.229625	930.444697	1.555	0.00072497	1.1288	0.00052628	2.6837	0.0012512	466.22902682233797	36.482	0.32322	36.284	36.093	36.416	-0.19829					10	7	2	0	0	0	0.027866	1	2821	2821		42.474	1.9018	1	74395	+		77975	25804;34372	54430	54522	86031	86031					-0.023307808905656202
TFELHVEG	8	Unmodified	_TFELHVEG_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR;REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	466.229625	930.444697	0.087934	4.0997E-05	3.5846	0.0016712	3.6725	0.0017122	466.23176124380973	36.617	0.4823	36.411	36.203	36.685	-0.20518	0.06382	0.0011442	NaN	42.474	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87669	+		77976	25804;34372	54430	54522							-0.023307808905656202
TFELLSPT	8	Unmodified	_TFELLSPT_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.2818908691406	2	454.242201	906.469849	-1.2831	-0.00058282	3.5849	0.0016284	2.3019	0.0010456	454.2436592688669	49.227	0.44328	49.301	49.06	49.503	0.074192					18	11	3	0	0	0	0.027866	1	5022	5022		12.207	4.5166	1	145910			77977	1582	54431	54523	86032	86032					0.012872739119870857
TFEMQIIKAK	10	Unmodified	_TFEMQIIKAK_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1;MYBPC1|p.E334Sfs*4|1|0.42|ENSG00000196091|chr12:101646872-101646872|G/-|frameshift_variant	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.5719909667969	3	403.56177	1207.66348	-0.72852	-0.000294	0.68253	0.00027544	-0.045995	-1.8562E-05	403.5618890492812	42.793	0.19057	42.567	42.484	42.675	-0.22597					6	4	2	0	0	0	0.03519	1	3868	3868		5.6988	0	1	33782			77978	9819	54432	54524	86033	86033					0.06795487356589547
TFEQVKPIK	9	Unmodified	_TFEQVKPIK_					0	0	0			REV__nc|ENSG00000151150|Q12955-4|ANK3	REV__nc|ENSG00000151150|Q12955-4|ANK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3167724609375	2	545.318774	1088.623	-0.23183	-0.00012642	-3.6645	-0.0019983	-3.8964	-0.0021248	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.89441	1	11157	11157		32.812	3.6629	1	11601000	+		77979	36782	54433	54525	86034	86034					0.08222889028456848
TFEVGIGVSAV	11	Unmodified	_TFEVGIGVSAV_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8179931640625	2	539.792589	1077.57063	-0.20773	-0.00011213	0.73646	0.00039754	0.52873	0.00028541	539.7921824614115	75.164	0.42099	74.888	74.72	75.141	-0.27573					17	9	2	0	0	0	0.024756	1	8847	8847		52.937	11.51	1	186560	+		77980	22345	54434	54526	86035	86035					0.03494305894855643
TFEVKKSVMKY	11	Unmodified	_TFEVKKSVMKY_					0	0	0			REV__ENSG00000163288|ENST00000295454|GABRB1	REV__ENSG00000163288|ENST00000295454|GABRB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	454.2247009277344	3	453.916213	1358.72681	-0.74941	-0.00034017	-4.2771	-0.0019414	-5.0265	-0.0022816	454.24821735624363	38.518	0.56354	38.297	38.054	38.617	-0.22149					23	14	2	0	0	0	0.024735	1	3163	3163		16.53	3.0219	1	219780	+		77981	25550	54435	54527	86036	86036					0.06179428073824056
TFFCQKDLEL	10	Unmodified	_TFFCQKDLEL_					0	0	0		nc|ENSG00000183439|Q5EBN2|TRIM61;ENSG00000183439|ENST00000710271|TRIM61	nc|ENSG00000183439|Q5EBN2|TRIM61	nc|ENSG00000183439|Q5EBN2|TRIM61	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.2071533203125	3	415.205763	1242.59546	-0.35519	-0.00014748	3.747	0.0015558	3.3918	0.0014083	415.20729428608007	36.736	0.90965	36.519	36.245	37.155	-0.21661					50	22	3	0	0	0	1.089	1	2904	2904		38.754	6.7195	1	1688700			77982	9230	54436	54528	86037	86037					-0.016133822940901155
TFFFLSFL	8	Unmodified	_TFFFLSFL_					0	0	0		ENST00000513924.1_1_5:57789658-57790123:+|nuORF	ENST00000513924.1_1_5:57789658-57790123:+|nuORF	ENST00000513924.1_1_5:57789658-57790123:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.253173828125	2	511.273304	1020.53206	-0.13143	-6.7198E-05	1.0928	0.00055872	0.96137	0.00049152	511.273406406496	57.089	0.78149	56.864	56.464	57.246	-0.2248					35	20	3	0	0	0	0.027866	1	6221	6221		50.025	7.6284	1	210120			77983	15874	54437	54529	86038	86038					0.0226104505100011
TFFFLTLL	8	Unmodified	_TFFFLTLL_					0	0	0		CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant;CELSR2|p.E2800Tfs*21|1|0.25|ENSG00000143126|chr1:109273224-109273236|AGAGAGTAGTGGC/-|frameshift_variant;ENSG00000143126|ENST00000271332|CELSR2;ENST00000489018.1_1_1:109812400-109812848:+|nuORF	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	CELSR2|p.G2786Qfs*28|1|0.12|ENSG00000143126|chr1:109273180-109273213|CCTGGCAAGGCCCCCTGGCCAGGAGACTTTGGGA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2905578613281	2	501.288954	1000.56336	-0.38964	-0.00019532	2.9233	0.0014654	2.5337	0.0012701	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.96719	1	10761	10761		42.474	0.078325	1	8504000			77984	247	54438	54530	86039	86039					0.06309618085094826
TFFHRGLL	8	Unmodified	_TFFHRGLL_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.8060607910156	2	495.779619	989.544686	-0.66888	-0.00033161	2.9443	0.0014597	2.2754	0.0011281	495.78084369451096	90.468	1.4058	90.468	89.564	90.97	0					80	33	3	0	0	0	0.027866	1	11363	11363		31.955	0	1	590150			77985	5677	54439	54531	86040	86040					0.049495012338979905
TFFLHSKPV	9	Unmodified	_TFFLHSKPV_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2459106445312	2	538.300384	1074.58622	-0.4795	-0.00025811	-3.4675	-0.0018666	-3.947	-0.0021247	538.2984283214972	35.954	1.1341	35.738	35.111	36.245	-0.21661					50	30	3	0	0	0	0.024381	1	2717	2717		37.159	10.363	1	560540	+		77986	20302	54440	54532	86041	86041					0.051906372025541714
TFFQLILE	8	Unmodified	_TFFQLILE_					0	0	0		ENST00000371113.8_3_X:128726009-128726135:+|nuORF	ENST00000371113.8_3_X:128726009-128726135:+|nuORF	ENST00000371113.8_3_X:128726009-128726135:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3544006347656	2	505.781493	1009.54843	-0.77717	-0.00039308	4.3391	0.0021946	3.5619	0.0018015	505.78353316977194	90.516	0.58357	90.391	90.088	90.671	-0.12513					21	13	2	0	0	0	0.027866	1	11093	11093		49.442	1.7842	1	65074			77987	12986	54441	54533	86042	86042					0.044041262170935624
TFFSPSIL	8	Unmodified	_TFFSPSIL_					0	0	0		ENST00000359326.8_2_1:169776999-169777041:+|nuORF	ENST00000359326.8_2_1:169776999-169777041:+|nuORF	ENST00000359326.8_2_1:169776999-169777041:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.86322021484375	2	456.247286	910.48002	-0.99588	-0.00045437	-2.1315	-0.00097249	-3.1274	-0.0014269	456.24609874682506	38.619	0.64457	38.439	38.136	38.78	-0.17929					38	17	3	0	0	0	0.027866	1	3188	3188		12.959	7.739	1	920370			77988	12735	54442	54534	86043	86043					0.021198816372361762
TFFYGREVF	9	Unmodified	_TFFYGREVF_					0	0	0		nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.279541015625	2	583.287474	1164.5604	-1.3839	-0.00080723	-3.9464	-0.0023019	-5.3303	-0.0031091	583.7868752114714	48.217	0.37477	47.941	47.63	48.004	-0.27598					11	9	2	0	0	0	0.024495	1	4726	4726		26.693	1.1189	1	140540			77989	7477	54443	54535	86044	86044					-0.01530257039735261
TFGGLSSSTG	10	Unmodified	_TFGGLSSSTG_					0	0	0		ENST00000474199.5_1_19:48800235-48800805:-|nuORF;ENST00000497273.1_1_19:48800235-48801266:-|nuORF;nc|ENSG00000105479|Q96M63-4|ODAD1;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	ENST00000474199.5_1_19:48800235-48800805:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.86322021484375	2	457.216714	912.418876	-0.95298	-0.00043572	3.2831	0.0015011	2.3301	0.0010654	457.2177191446208	38.566	0.11688	38.387	38.305	38.422	-0.17929					4	2	2	0	0	0	0.03519	1	3188	3188		14.137	3.2716	1	18161			77990	2681	54444	54536	86045	86045					-0.04083675132835651
TFGLAVLHAAA	11	Unmodified	_TFGLAVLHAAA_					0	0	0			REV__ENST00000490926.1_1_3:50388858-50395589:+|nuORF	REV__ENST00000490926.1_1_3:50388858-50395589:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7589721679688	2	535.803291	1069.59203	-0.8194	-0.00043904	-1.1739	-0.00062898	-1.9933	-0.001068	536.304092446955	42.368	0.47934	42.136	41.87	42.349	-0.23186					24	12	3	0	0	0	0.024732	1	3780	3780		19.104	4.9664	1	252630	+		77991	22120	54445	54537	86046	86046					0.06001735714221468
TFGLHGVVL	9	Unmodified	_TFGLHGVVL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7904052734375	2	471.774003	941.533452	-0.19315	-9.1123E-05	3.3241	0.0015682	3.1309	0.0014771	471.776103551724	47.818	0.37004	47.878	47.739	48.109	0.059097					14	10	2	0	0	0	0.023528	1	4751	4751		50.025	7.6284	1	543260			77992	8336	54446	54538	86047	86047					0.06034679139747823
TFGLHGVVL	9	Unmodified	_TFGLHGVVL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.774003	941.533452	-0.49753	-0.00023472	10.435	0.0049232	9.9379	0.0046885	471.77893711561563	48.33	0.47042	48.233	48.039	48.51	-0.097553	0.0056437	0.00022604	NaN	50.025	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373830			77993	8336	54446	54538							0.06034679139747823
TFGLHGVVL	9	Unmodified	_TFGLHGVVL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.774003	941.533452	-0.87197	-0.00041137	11.497	0.0054242	10.625	0.0050128	471.77917433198917	48.712	0.49968	48.432	48.147	48.647	-0.27977	0.20493	0.001228	NaN	50.025	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257280			77994	8336	54446	54538							0.06034679139747823
TFGLHGVVL	9	Unmodified	_TFGLHGVVL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.774003	941.533452	-0.32802	-0.00015475	10.708	0.0050516	10.38	0.0048969	471.77874092939794	48.548	0.57605	48.366	48.091	48.667	-0.18206	0.13896	0.00048296	NaN	50.025	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356930			77995	8336	54446	54538							0.06034679139747823
TFGRSYSVE	9	Unmodified	_TFGRSYSVE_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2859497070312	2	523.251089	1044.48762	-1.1478	-0.0006006	0.73318	0.00038364	-0.41464	-0.00021696	523.2514885364244	34.999	0.41842	34.999	34.746	35.164	0					16	10	2	0	0	0	0.024541	1	2629	2629		23.042	0	1	163920	+		77996	25379	54447	54539	86048	86048					-0.032840108331583906
TFGSCLRRLD	10	Unmodified	_TFGSCLRRLD_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.7867431640625	2	584.30059	1166.58663	-1.3649	-0.00079749	1.4104	0.00082408	0.045504	2.6588E-05	584.8024760918421	66.386	0.57973	66.163	65.824	66.404	-0.22301					24	14	3	0	0	0	0.03519	1	7568	7568		38.754	8.4359	1	179410	+		77997	29003	54448	54540	86049	86049					0.009996888601108367
TFGSIWIML	9	Unmodified	_TFGSIWIML_					0	0	0			REV__ENST00000498416.2_1_13:60566620-60566695:-|nuORF	REV__ENST00000498416.2_1_13:60566620-60566695:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2836303710938	2	534.283346	1066.55214	-0.34549	-0.00018459	3.2337	0.0017277	2.8882	0.0015431	534.2854367620389	105.78	1.0462	105.77	105.28	106.33	-0.0013199					80	36	3	0	0	0	0.43973	1	13598	13598		63.306	11.007	1	240410	+		77998	33879	54449	54541	86050	86050					0.021524727192854698
TFHGLPSG	8	Unmodified	_TFHGLPSG_					0	0	0			REV__nc|ENSG00000010803|Q96GD3|SCMH1	REV__nc|ENSG00000010803|Q96GD3|SCMH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	408.9223937988281	2	408.205953	814.397353	0.74112	0.00030253	-1.6639	-0.0006792	-0.92275	-0.00037667	408.2052247786181	103.48	0.74541	103.48	102.96	103.71	0					23	17	2	0	0	0	0.027866	1	13252	13252		31.955	8.9124	1	282550	+		77999	36434	54450	54542	86051	86051					-0.017270153709091574
TFHHLAAR	8	Unmodified	_TFHHLAAR_					0	0	0		ENSG00000158816|ENST00000289815|VWA5B1;nc|ENSG00000158816|Q5TIE3|VWA5B1;nc|ENSG00000158816|Q5TIE3-4|VWA5B1;nc|ENSG00000158816|Q5TIE3-5|VWA5B1	ENSG00000158816|ENST00000289815|VWA5B1	ENSG00000158816|ENST00000289815|VWA5B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.76080322265625	2	476.759218	951.503883	2.3019	0.0010974	1.2985	0.00061907	3.6004	0.0017165	476.75966716195984	18.996	0.54328	18.996	18.774	19.317	0					23	10	3	0	0	0	0.96719	1	366	366		42.474	1.9018	1	252300			78000	6705	54451	54543	86052	86052					0.026191599142634914
TFHKIFKD	8	Unmodified	_TFHKIFKD_					0	0	0			REV__nc|ENSG00000196711|Q6UXT8-2|ALKAL1	REV__nc|ENSG00000196711|Q6UXT8-2|ALKAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.3187866210938	2	518.284734	1034.55492	-0.51066	-0.00026467	3.8728	0.0020072	3.3622	0.0017426	518.2867388722797	77.355	0.46894	77.368	77.187	77.656	0.013504					15	10	2	0	0	0	0.027866	1	9450	9450		27.882	4.3595	1	148960	+		78001	28218	54452	54544	86053	86053					0.03902064168460129
TFHPRYLL	8	Unmodified	_TFHPRYLL_					0	0	0			REV__ENST00000261593.7_1_18:29671839-29671944:+|nuORF	REV__ENST00000261593.7_1_18:29671839-29671944:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7968139648438	2	523.792727	1045.5709	-0.89203	-0.00046724	3.9525	0.0020703	3.0605	0.0016031	523.7945266631021	39.308	0.47942	39.143	38.862	39.342	-0.16458					25	12	3	0	0	0	0.027866	1	3295	3295		37.028	12.826	1	240880	+		78002	29628	54453	54545	86054	86054					0.049937704053718335
TFHRKMIL	8	Unmodified	_TFHRKMIL_					0	0	0			REV__ENSG00000145375|ENST00000274008|SPATA5	REV__ENSG00000145375|ENST00000274008|SPATA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.302490234375	2	523.302404	1044.59026	-0.30343	-0.00015878	1.4731	0.0007709	1.1697	0.00061212	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.95679	1	10840	10840		44.117	0	1	11993000	+		78003	24405	54454	54546	86055	86055					0.06974403424624143
TFHSIAKSK	9	Unmodified	_TFHSIAKSK_					0	0	0			REV__ENST00000557447.5_1_14:63757953-63758103:+|nuORF	REV__ENST00000557447.5_1_14:63757953-63758103:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.7953796386719	2	509.787641	1017.56073	0.15588	7.9468E-05	2.6097	0.0013304	2.7656	0.0014099	510.2914005582168	102.72	0.43117	102.55	102.33	102.76	-0.17034					12	9	2	0	0	0	0.024397	1	12745	12745		31.53	0	1	45466	+		78004	35070	54455	54547	86056	86056					0.05265162680143476
TFHTYSNST	9	Unmodified	_TFHTYSNST_					0	0	0		nc|ENSG00000177301|P16389-2|KCNA2;ENSG00000177301|ENST00000316361|KCNA2	nc|ENSG00000177301|P16389-2|KCNA2	nc|ENSG00000177301|P16389-2|KCNA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2488403320312	2	529.232896	1056.45124	-0.1669	-8.8327E-05	3.5619	0.0018851	3.395	0.0017968	529.2345010807334	32.311	0.7571	32.075	31.74	32.497	-0.23666					40	17	3	0	0	0	0.0242	1	2279	2279		51.193	1.6567	1	492180			78005	8725	54456	54548	86057	86057					-0.07472887729841204
TFHTYSNST	9	Unmodified	_TFHTYSNST_					0	0	0		nc|ENSG00000177301|P16389-2|KCNA2;ENSG00000177301|ENST00000316361|KCNA2	nc|ENSG00000177301|P16389-2|KCNA2	nc|ENSG00000177301|P16389-2|KCNA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.232896	1056.45124	-0.031424	-1.6631E-05	3.7288	0.0019734	3.6973	0.0019568	529.2344971922644	32.254	0.85979	32.061	31.597	32.457	-0.19261	-0.011762	0.00016923	NaN	51.193	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516680			78006	8725	54456	54548							-0.07472887729841204
TFHVYIYIYMY	11	Unmodified	_TFHVYIYIYMY_					0	0	0		ENST00000342756.9_1_4:57368535-57368814:+|nuORF	ENST00000342756.9_1_4:57368535-57368814:+|nuORF	ENST00000342756.9_1_4:57368535-57368814:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2485656738281	3	504.91258	1511.71591	0.37966	0.0001917	2.9734	0.0015013	3.353	0.001693	504.9142288750899	22.413	0.79174	22.224	21.628	22.42	-0.18894					30	16	4	0	0	0	0.024782	1	739	739		14.086	0	1	92915			78007	12512	54457	54549	86058	86058					-0.019479743004694683
TFIFQMVI	8	Unmodified	_TFIFQMVI_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7706298828125	2	499.772614	997.530675	-0.019671	-9.8308E-06	-3.5971	-0.0017977	-3.6167	-0.0018075	499.77068014153656	65.305	1.2762	65.343	64.928	66.205	0.037376					89	34	4	0	0	0	0.77775	1	7656	7656		60.972	0.67798	1	13501000			78008	5200	54458	54550	86059	86059					0.03181087690586537
TFILKQDF	8	Unmodified	_TFILKQDF_					0	0	0			REV__nc|ENSG00000163840|Q8TDB6-2|DTX3L	REV__nc|ENSG00000163840|Q8TDB6-2|DTX3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.291748046875	2	506.279118	1010.54368	0.42027	0.00021277	2.5801	0.0013062	3.0004	0.001519	506.7823156079914	96.251	0.45149	96.114	95.853	96.304	-0.1367					14	10	2	0	0	0	0.027866	1	11897	11897		25.45	5.4534	1	150520	+		78009	25645	54459	54551	86060	86060					0.03883242074323334
TFILNALIL	9	Unmodified	_TFILNALIL_					0	0	0			REV__ENST00000458118.5_1_13:41428885-41438465:-|nuORF	REV__ENST00000458118.5_1_13:41428885-41438465:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3209228515625	2	509.320786	1016.62702	-0.025268	-1.2869E-05	0.14723	7.4989E-05	0.12197	6.2119E-05	509.3207037455496	106.92	0.67344	106.8	106.68	107.35	-0.1238					37	22	3	0	0	0	0.6504	1	13310	13310		49.442	1.5259	1	150310	+		78010	32820	54460	54552	86061	86061					0.11936978522192021
TFIPFPRR	8	Unmodified	_TFIPFPRR_					0	0	0		MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|21|3|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|21|3|anti-sense	MLT1K_dup7910|chr8:37404142-37404534:-|1.3142653639828026|0.1258645542217392|3.38|508.0|21|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.7840576171875	2	517.300719	1032.58688	0.26006	0.00013453	-1.4319	-0.00074071	-1.1718	-0.00060618	517.2995746281813	93.317	1.6708	93.195	92.628	94.299	-0.12215					48	38	2	0	0	0	0.027866	1	11580	11580		42.474	15.678	1	127720			78011	17986	54461	54553	86062	86062					0.07189476642270165
TFIQRVQSL	9	Unmodified	_TFIQRVQSL_					0	0	0		ENST00000521477.5_1_8:142166019-142175288:+|nuORF;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3	ENST00000521477.5_1_8:142166019-142175288:+|nuORF	ENST00000521477.5_1_8:142166019-142175288:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2958374023438	2	546.314023	1090.61349	0.033716	1.842E-05	0.29792	0.00016276	0.33164	0.00018118	546.3140081702744	57.38	0.70055	57.178	56.962	57.662	-0.20208					40	18	3	0	0	0	0.024409	1	6281	6281		49.536	20.386	1	560090			78012	2660	54462	54554	86063	86063					0.07181120742961866
TFISIDRYLII	11	Unmodified	_TFISIDRYLII_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9327697753906	3	451.930739	1352.77039	0.95574	0.00043193	3.4973	0.0015805	4.453	0.0020125	451.93215521600763	97.035	2.3592	96.912	95.552	97.912	-0.12368					183	54	5	0	0	0	1.0532	1	12023	12023		24.232	4.9691	1	477030			78013	10216	54463	54555	86064	86064					0.10811360842626527
TFISKQKKG	9	Unmodified	_TFISKQKKG_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.31689453125	2	518.811116	1035.60768	0.52143	0.00027052	-0.98042	-0.00050865	-0.45899	-0.00023813	518.8108970515187	84.184	1.0331	84.046	83.629	84.663	-0.13789					31	23	2	0	0	0	0.024457	1	10142	10142		37.159	0	1	232520	+		78014	27537	54464	54556	86065	86065					0.09130022231283874
TFISKQKKG	9	Unmodified	_TFISKQKKG_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.811116	1035.60768	0.33132	0.00017189	1.7721	0.00091939	2.1034	0.0010913	518.8127017155607	84.464	0.6368	84.261	83.907	84.544	-0.20329	0.12406	0.00042441	NaN	51.335	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261890	+		78015	27537	54464	54556							0.09130022231283874
TFIVSSLVPS	10	Unmodified	_TFIVSSLVPS_					0	0	0		ENST00000470306.5_1_1:156126086-156128580:+|nuORF	ENST00000470306.5_1_1:156126086-156128580:+|nuORF	ENST00000470306.5_1_1:156126086-156128580:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2877197265625	2	525.297507	1048.58046	-1.2505	-0.00065687	-1.059	-0.00055631	-2.3095	-0.0012132	525.2964602739679	80.292	0.62822	80.14	79.843	80.471	-0.15169					22	14	3	0	0	0	0.03519	1	9931	9931		36.447	0	1	390140			78016	14930	54465	54557	86066	86066					0.05811493900228015
TFKALHRQLL	10	Unmodified	_TFKALHRQLL_					0	0	0		ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.5826110839844	3	409.583785	1225.72953	-0.35352	-0.00014479	-2.8539	-0.0011689	-3.2074	-0.0013137	409.58256872949914	34.951	1.3237	34.929	34.593	35.917	-0.021763					96	34	5	0	0	0	1.0344	1	2633	2633		41.427	1.5535	1	2038200			78017	16931	54466	54558	86067	86067					0.12569064313652234
TFKALHRQLL	10	Unmodified	_TFKALHRQLL_					0	0	0		ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	ENST00000565906.2_1_15:89532752-89533049:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	409.583785	1225.72953	0.49309	0.00020196	-3.551	-0.0014544	-3.058	-0.0012525	409.58223162658066	35.052	1.4492	35.096	34.756	36.205	0.04406	0.045837	-0.00021237	NaN	41.427	91	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1876100			78018	16931	54466	54558							0.12569064313652234
TFKEKRKSL	9	Unmodified	_TFKEKRKSL_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2315063476562	2	568.842948	1135.67134	0.073926	4.2052E-05	3.6577	0.0020806	3.7316	0.0021227	568.844933586296	76.626	0.38214	76.358	76.17	76.552	-0.26806					10	8	2	0	0	0	0.024527	1	9070	9070		18.262	4.808	1	65751			78019	8343	54467	54559	86068	86068					0.10893382668359664
TFKEPKVSPNP	11	Unmodified	_TFKEPKVSPNP_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-5|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.7618103027344	3	415.227556	1242.66084	-0.14811	-6.1498E-05	-1.1975	-0.00049722	-1.3456	-0.00055872	415.227073439265	110.16	0.67224	110.04	109.87	110.54	-0.12525					66	24	3	0	0	0	0.024727	1	13575	13575		29.551	1.9068	1	906860			78020	8273	54468	54560	86069	86069					0.04921355223291357
TFKGLIEKQVF	11	Unmodified	_TFKGLIEKQVF_					0	0	0			REV__ALDH9A1|p.D326G|1|0.09|ENSG00000143149|chr1:165669404-165669404|T/C|missense_variant	REV__ALDH9A1|p.D326G|1|0.09|ENSG00000143149|chr1:165669404-165669404|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.2569580078125	3	437.255334	1308.74417	1.1887	0.00051975	3.5175	0.0015381	4.7062	0.0020578	437.2568354988285	97.354	2.8643	97.354	96.484	99.348	-3.8147E-05					200	65	5	0	0	0	1.03	1	12430	12430		30.139	5.9073	1	1114100	+		78021	19104	54469	54561	86070	86070					0.10215091671102527
TFKIVDYED	9	Unmodified	_TFKIVDYED_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;ENST00000498486.1_1_2:172336502-172337621:+|nuORF;nc|ENSG00000115827|Q5H9S7-2|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2999267578125	2	565.274229	1128.53391	1.5139	0.00085576	-1.1382	-0.00064341	0.37566	0.00021235	565.2732592008269	74.287	0.38121	74.287	74.084	74.466	0					12	8	2	0	0	0	0.024344	1	9109	9109		54.776	12.302	1	81054			78022	3493	54470	54562	86071	86071					-0.025219907217206128
TFKIVDYED	9	Unmodified	_TFKIVDYED_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;ENST00000498486.1_1_2:172336502-172337621:+|nuORF;nc|ENSG00000115827|Q5H9S7-2|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.274229	1128.53391	0.12994	7.3454E-05	0.3327	0.00018807	0.46265	0.00026152	565.2742325500953	74.784	0.32944	74.508	74.308	74.638	-0.27573	0.11197	0.0011242	NaN	54.776	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78507			78023	3493	54470	54562							-0.025219907217206128
TFKLAFVK	8	Unmodified	_TFKLAFVK_					0	0	0		nc|ENSG00000206072|Q96P15-2|SERPINB11;ENSG00000206072|ENST00000544088|SERPINB11	nc|ENSG00000206072|Q96P15-2|SERPINB11	nc|ENSG00000206072|Q96P15-2|SERPINB11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.2920837402344	2	477.294571	952.574589	-0.19249	-9.1877E-05	-4.2285	-0.0020182	-4.421	-0.0021101	477.29245057855684	53.641	0.75879	53.444	53.163	53.922	-0.19739					71	22	5	0	0	0	1.0338	1	5646	5646		31.955	1.4512	1	7688300			78024	10460	54471	54563	86072	86072					0.09640440179225607
TFKMQALN	8	Unmodified	_TFKMQALN_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.76251220703125	2	476.74967	951.484787	2.5267	0.0012046	-3.1352	-0.0014947	-0.60851	-0.00029011	476.747765975202	63.901	0.21653	63.901	63.81	64.026	0					7	5	2	0	0	0	0.027866	1	7513	7513		27.882	1.0861	1	132540	+		78025	23341	54472	54564	86073	86073					0.007104425083412025
TFKRKSEVE	9	Unmodified	_TFKRKSEVE_					0	0	0		nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.308837890625	2	562.308938	1122.60332	-0.45996	-0.00025864	0.30153	0.00016955	-0.15844	-8.9092E-05	562.3092713126148	69.073	1.2743	69.073	68.641	69.915	0					100	32	4	0	0	0	0.48817	1	8309	8309		60.118	1.872	1	6071100			78026	4621	54473	54565	86074	86074					0.04692513017721467
TFKRLIRF	8	Unmodified	_TFKRLIRF_					0	0	0		ENSG00000157184|ENST00000371486|CPT2;CPT2|p.L325Sfs*3|1|0.38|ENSG00000157184|chr1:53210647-53210647|C/-|frameshift_variant	ENSG00000157184|ENST00000371486|CPT2	ENSG00000157184|ENST00000371486|CPT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7530517578125	2	540.837468	1079.66038	-1.5659	-0.00084689	1.709	0.00092428	0.14309	7.7388E-05	540.8381455197787	38.186	0.49934	37.968	37.718	38.218	-0.21848					26	14	3	0	0	0	0.027866	1	3141	3141		8.2313	0	1	255710			78027	6582	54474	54566	86075	86075					0.12374025084750429
TFKVTKTVE	9	Unmodified	_TFKVTKTVE_					0	0	0		ENST00000478152.1_1_2:231655619-231663633:+|nuORF	ENST00000478152.1_1_2:231655619-231663633:+|nuORF	ENST00000478152.1_1_2:231655619-231663633:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.2467651367188	2	526.802957	1051.59136	-0.68142	-0.00035898	-2.9155	-0.0015359	-3.5969	-0.0018949	526.8010510184585	38.06	0.50595	37.88	37.63	38.136	-0.17929					30	14	3	0	0	0	0.024447	1	3128	3128		49.442	13.823	1	457280			78028	15129	54475	54567	86076	86076					0.06762896274517516
TFLFETSEP	9	Unmodified	_TFLFETSEP_					0	0	0		nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	nc|ENSG00000156313|Q92834-2|RPGR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7669677734375	2	535.755672	1069.49679	-1.367	-0.00073239	-1.8953	-0.0010154	-3.2623	-0.0017478	536.2559333065785	37.277	0.19243	37.058	36.999	37.192	-0.2195					5	4	2	0	0	0	0.024535	1	2983	2983		12.207	0	1	53087			78029	18404	54476	54568	86077	86077					-0.03517662267495325
TFLGRSLLL	9	Unmodified	_TFLGRSLLL_					0	0	0		ENST00000551665.1_1_12:54680429-54680832:+|nuORF;ENST00000546500.5_1_12:54680429-54680576:+|nuORF	ENST00000551665.1_1_12:54680429-54680832:+|nuORF	ENST00000551665.1_1_12:54680429-54680832:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.26348876953125	2	510.316035	1018.61752	0.07017	3.5809E-05	-0.50311	-0.00025675	-0.43294	-0.00022094	510.315542003671	79.109	0.70708	78.877	78.65	79.357	-0.23141					37	16	4	0	0	0	0.024541	1	9499	9499		16.473	0	1	346450			78030	16605	54477	54569	86078	86078					0.10895210236662933
TFLGSLTGN	9	Unmodified	_TFLGSLTGN_					0	0	0		nc|ENSG00000183876|Q5FYB1-2|ARSI;ENSG00000183876|ENST00000328668|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	nc|ENSG00000183876|Q5FYB1-2|ARSI	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.23919677734375	2	455.23745	908.460347	0.3198	0.00014559	-1.0462	-0.00047625	-0.72635	-0.00033066	455.2368857873741	103.02	0.69856	102.85	102.5	103.2	-0.17034					36	16	3	0	0	0	0.96322	1	12781	12781		27.882	0	1	1771700			78031	9289	54478	54570	86079	86079					0.002455056264693667
TFLISRTL	8	Unmodified	_TFLISRTL_					0	0	0		ENST00000526774.5_1_11:43418220-43418328:+|nuORF	ENST00000526774.5_1_11:43418220-43418328:+|nuORF	ENST00000526774.5_1_11:43418220-43418328:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.7871398925781	2	475.78711	949.559667	0.737	0.00035065	-0.87543	-0.00041652	-0.13843	-6.5863E-05	475.7866224351529	85.75	2.0796	85.6	84.582	86.661	-0.14967					104	48	4	0	0	0	0.95417	2	10409	10375;10409		44.531	0	1	4960100			78032	16131	54479	54571	86080;86081	86081					0.08286948311229025
TFLIWVLIS	9	Unmodified	_TFLIWVLIS_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A;ENST00000587410.1_1_18:77132833-77134205:+|nuORF;ENST00000588921.1_3_18:77132616-77137380:+|nuORF;nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.3067016601562	2	546.328611	1090.64267	-1.608	-0.0008785	-2.9264	-0.0015988	-4.5345	-0.0024773	546.3269327882443	80.757	1.2158	80.781	80.319	81.534	0.023911					57	29	2	0	0	0	0.024354	1	9966	9966		30.504	13.139	1	612990			78033	1177	54480	54572	86082	86082					0.10097265039235026
TFLKKKGG	8	Unmodified	_TFLKKKGG_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.25830078125	2	439.776545	877.538538	0.4674	0.00020555	-0.3289	-0.00014464	0.13851	6.0912E-05	439.7762666800721	58.316	0.54904	58.316	58.056	58.606	0					30	14	3	0	0	0	0.027866	1	6623	6623		50.025	0.81375	1	1100200			78034	10816	54481	54573	86083	86083					0.09486983002386751
TFLKVVNNV	9	Unmodified	_TFLKVVNNV_					0	0	0			REV__ENST00000601440.5_1_19:20806846-20807089:-|nuORF	REV__ENST00000601440.5_1_19:20806846-20807089:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7855224609375	2	517.305667	1032.59678	-0.96912	-0.00050133	0.12523	6.4781E-05	-0.84389	-0.00043655	517.305575627143	44.487	0.76055	44.268	43.826	44.587	-0.21939					51	20	4	0	0	0	0.024539	1	4175	4175		20.947	0	1	1459700	+		78035	35858	54482	54574	86084	86084					0.08178619856994374
TFLLLCCL	8	Unmodified	_TFLLLCCL_					0	0	0		ENST00000316836.4_1_14:74180815-74181067:-|nuORF	ENST00000316836.4_1_14:74180815-74181067:-|nuORF	ENST00000316836.4_1_14:74180815-74181067:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.2510070800781	2	463.247917	924.481282	-0.15377	-7.1233E-05	4.3454	0.002013	4.1917	0.0019418	463.24970976307117	30.137	0.3878	29.987	29.792	30.18	-0.14952					20	8	3	0	0	0	0.027866	1	1896	1896		14.664	0	1	360010			78036	12151	54483	54575	86085	86085					0.016020564101154378
TFLLLHLSP	9	Unmodified	_TFLLLHLSP_					0	0	0			REV__ENST00000592346.1_1_19:35624296-35625500:-|nuORF	REV__ENST00000592346.1_1_19:35624296-35625500:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.29248046875	2	520.810585	1039.60662	-0.14503	-7.5531E-05	3.3716	0.001756	3.2266	0.0016805	520.812257567099	72.967	0.44568	72.977	72.735	73.181	0.0096512					18	10	2	0	0	0	0.024381	1	8819	8819		37.159	14.117	1	279960	+		78037	24917	54484	54576	86086	86086					0.08839807862364069
TFLLLHLSP	9	Unmodified	_TFLLLHLSP_					0	0	0			REV__ENST00000592346.1_1_19:35624296-35625500:-|nuORF	REV__ENST00000592346.1_1_19:35624296-35625500:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.810585	1039.60662	-0.30211	-0.00015734	3.0031	0.001564	2.7009	0.0014067	520.8122421173529	72.973	0.38123	72.775	72.497	72.878	-0.19811	-0.115	-0.00043065	NaN	37.159	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88963	+		78038	24917	54484	54576							0.08839807862364069
TFLLNFFI	8	Unmodified	_TFLLNFFI_					0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.31024169921875	2	507.786579	1013.5586	-0.28539	-0.00014492	2.3528	0.0011947	2.0674	0.0010498	507.7879919831663	31.577	0.5131	31.392	31.136	31.649	-0.18503					16	12	2	0	0	0	0.027866	1	2146	2146		45.952	7.1458	1	98291	+		78039	24393	54485	54577	86087	86087					0.05236733942331284
TFLLRINN	8	Unmodified	_TFLLRINN_					0	0	0			REV__ENST00000531513.5_1_11:11964592-11970195:+|nuORF	REV__ENST00000531513.5_1_11:11964592-11970195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.22735595703125	2	495.790184	989.565815	-0.46159	-0.00022885	1.0377	0.00051447	0.5761	0.00028562	495.7899447061555	38.708	0.60535	38.61	38.238	38.843	-0.098755					32	15	3	0	0	0	0.027866	1	3199	3199		10.866	0	1	205790	+		78040	34559	54486	54578	86088	86088					0.0706146654274562
TFLLRLPPG	9	Unmodified	_TFLLRLPPG_					0	0	0		ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	ENSG00000234438|ENST00000432196|KBTBD13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7142028808594	2	507.310752	1012.60695	-0.463	-0.00023488	-4.303	-0.002183	-4.766	-0.0024179	507.30844629315425	34.794	0.60406	34.587	34.326	34.93	-0.20696					24	14	2	0	0	0	0.024477	1	2556	2556		20.947	5.3107	1	131510			78041	10719	54487	54579	86089	86089					0.10115227582230091
TFLLSAGL	8	Unmodified	_TFLLSAGL_					0	0	0		nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3;ENSG00000139508|ENST00000266943|SLC46A3;nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3;ENST00000475385.1_1_13:29275636-29278315:-|nuORF	nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.8873291015625	2	411.242004	820.469455	0.030523	1.2552E-05	-4.3569	-0.0017917	-4.3264	-0.0017792	411.2379046913056	27.729	0.26056	27.487	27.335	27.596	-0.24217					6	5	2	0	0	0	0.027866	1	1543	1543		8.8223	0	1	21720			78042	5338	54488	54580	86090	86090					0.05203898982802002
TFLLSTSDN	9	Unmodified	_TFLLSTSDN_					0	0	0			REV__ENST00000334529.9_1_3:112182899-112183094:-|nuORF	REV__ENST00000334529.9_1_3:112182899-112183094:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77935791015625	2	499.245472	996.476391	-0.7905	-0.00039465	-1.9368	-0.00096695	-2.7273	-0.0013616	499.2457138838042	65.495	0.53399	65.244	64.986	65.52	-0.25112					26	12	4	0	0	0	0.024381	1	7453	7453		29.15	0	1	232140	+		78043	30520	54489	54581	86091	86091					-0.02198832927285821
TFLLVLHA	8	Unmodified	_TFLLVLHA_					0	0	0		nc|ENSG00000163357|Q5T197-2|DCST1;nc|ENSG00000163357|Q5T197-3|DCST1;ENSG00000163357|ENST00000295542|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2895812988281	2	457.278921	912.543289	-0.026629	-1.2177E-05	0.67397	0.00030819	0.64734	0.00029601	457.2789883461428	94.094	0.17454	93.946	93.825	94	-0.14771					5	3	2	0	0	0	0.027866	1	11564	11564		4.6817	0	1	22421			78044	7064	54490	54582	86092	86092					0.08351867145131564
TFLLYVFLPQL	11	Unmodified	_TFLLYVFLPQL_					0	0	0			REV__ENSG00000204195|ENST00000374521|AWAT1	REV__ENSG00000204195|ENST00000374521|AWAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9326477050781	3	451.93208	1352.77441	0.91985	0.00041571	0.33965	0.0001535	1.2595	0.00056921	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0739	1	12323	12323		18.531	1.3643	1	1435400	+		78045	28573	54491	54583	86093	86093					0.1121345033632224
TFLLYVFLPQL	11	Unmodified	_TFLLYVFLPQL_					0	0	0			REV__ENSG00000204195|ENST00000374521|AWAT1	REV__ENSG00000204195|ENST00000374521|AWAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.932861328125	3	451.93208	1352.77441	1.0325	0.00046661	0.25708	0.00011618	1.2896	0.0005828	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0739	1	12317	12317		18.531	0.69791	1	1299700	+		78046	28573	54491	54583	86094	86094					0.1121345033632224
TFLMIRKHSM	10	Unmodified	_TFLMIRKHSM_					0	0	0			REV__ENSG00000196419|ENST00000360079|XRCC6	REV__ENSG00000196419|ENST00000360079|XRCC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.2560119628906	3	421.894866	1262.66277	0.46625	0.00019671	-0.23788	-0.00010036	0.22837	9.635E-05	422.2293775539134	21.606	0.28679	21.428	21.256	21.543	-0.17721					10	5	2	0	0	0	0.03519	1	707	707		10.587	0	1	15727	+		78047	28180	54492	54584	86095	86095					0.04194369435867884
TFLNSTLIY	9	Unmodified	_TFLNSTLIY_					0	0	0		ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7672119140625	2	536.289682	1070.56481	-0.41017	-0.00021997	-2.7022	-0.0014492	-3.1124	-0.0016691	536.2880101995371	37.73	0.78011	37.55	37.128	37.908	-0.17929					41	20	3	0	0	0	0.024487	1	3008	3008		24.203	0	1	1025000			78048	9681	54493	54585	86096	86096					0.03235207383204397
TFLPLLSML	9	Unmodified	_TFLPLLSML_					0	0	0		ENSG00000163472|ENST00000405535|TMEM79	ENSG00000163472|ENST00000405535|TMEM79	ENSG00000163472|ENST00000405535|TMEM79	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7685546875	2	517.801371	1033.58819	0.039556	2.0482E-05	2.8644	0.0014832	2.9039	0.0015037	517.8026559588116	39.265	0.58984	39.04	38.806	39.395	-0.2257					45	15	4	0	0	0	0.024436	1	3335	3335		38.806	8.9646	1	592500			78049	7083	54494	54586	86097	86097					0.07273929896155096
TFLPSSKVT	9	Unmodified	_TFLPSSKVT_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN;nc|ENSG00000166454|O43313-2|ATMIN;ENST00000445995.2_1_9:98055954-98056092:+|nuORF	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2552185058594	2	490.276575	978.538597	0.33032	0.00016195	-4.3136	-0.0021148	-3.9833	-0.0019529	490.27470699070346	39.814	0.18156	39.814	39.733	39.915	0					5	4	2	0	0	0	0.024511	1	3466	3466		25.574	3.8717	1	49370			78050	7566	54495	54587	86098	86098					0.04846938211710494
TFLRLLSVSA	10	Unmodified	_TFLRLLSVSA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.830322265625	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0719	1	11111	11111		36.447	0.82846	1	4967900			78051	10315	54496	54588	86099	86099					0.10094577919812764
TFLRLLSVSA	10	Unmodified	_TFLRLLSVSA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8302612304688	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0122	2	11099	10994;11099		44.377	9.2252	1	6583300			78052	10315	54496	54588	86100;86101	86101					0.10094577919812764
TFLRLLSVSA	10	Unmodified	_TFLRLLSVSA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8298950195312	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	1.0719	1	10598	10598		36.447	2.2742	1	1623500			78053	10315	54496	54588	86102	86102					0.10094577919812764
TFLRLLSVSA	10	Unmodified	_TFLRLLSVSA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8304443359375	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.1266	2	10999	10999;11048		29.17	2.4771	1	5986700			78054	10315	54496	54588	86103;86104	86103					0.10094577919812764
TFLRPPKP	8	Unmodified	_TFLRPPKP_					0	0	0			REV__ENSG00000135631|ENST00000486777|RAB11FIP5	REV__ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7774353027344	2	478.28982	954.565087	0.24775	0.0001185	1.2757	0.00061015	1.5234	0.00072865	478.29059842596365	27.332	0.39832	27.332	27.109	27.508	0					17	10	3	0	0	0	0.027866	1	1475	1475		24.203	0	1	336260	+		78055	23562	54497	54589	86105	86105					0.08598671893707888
TFLSPRPRT	9	Unmodified	_TFLSPRPRT_					0	0	0			REV__ENST00000428142.1_1_17:16880427-16880571:-|nuORF	REV__ENST00000428142.1_1_17:16880427-16880571:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.7918701171875	2	537.806365	1073.59818	-1.312	-0.00070558	0.081969	4.4083E-05	-1.23	-0.0006615	537.8063426238699	37.276	0.62202	37.056	36.846	37.468	-0.2195					32	15	3	0	0	0	0.024457	1	3033	3033		37.159	0	1	721340	+		78056	32315	54498	54590	86106	86106					0.0643225394574074
TFLSVSVLPL	10	Unmodified	_TFLSVSVLPL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3095703125	2	538.323525	1074.6325	0.031099	1.6741E-05	-1.2919	-0.00069544	-1.2608	-0.0006787	538.322424406129	18.788	0.19796	18.584	18.46	18.658	-0.20371					5	3	2	0	0	0	0.03519	1	327	327		29.15	10.825	1	18614	+		78057	25812	54499	54591	86107	86107					0.09816657314013355
TFLTKAISK	9	Unmodified	_TFLTKAISK_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.7140197753906	2	504.808042	1007.60153	0.11035	5.5704E-05	-2.242	-0.0011318	-2.1316	-0.0010761	504.8067013892604	32.054	0.30032	31.817	31.654	31.954	-0.23667					10	6	2	0	0	0	0.024523	1	2174	2174		5.9211	0	1	51003			78058	3858	54500	54592	86108	86108					0.09803503999751229
TFLTKIKSAK	10	Unmodified	_TFLTKIKSAK_					0	0	0		nc|ENSG00000134278|Q08AE8-4|SPIRE1;nc|ENSG00000134278|Q08AE8-3|SPIRE1;nc|ENSG00000134278|Q08AE8-5|SPIRE1;nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1	nc|ENSG00000134278|Q08AE8-4|SPIRE1	nc|ENSG00000134278|Q08AE8-4|SPIRE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.80859375	2	568.855524	1135.69649	-0.29294	-0.00016664	-1.7157	-0.00097596	-2.0086	-0.0011426	568.8547686588204	76.855	0.16751	76.686	76.61	76.777	-0.16853					6	3	2	0	0	0	0.03519	1	9128	9128		24.519	9.6543	1	66825			78059	4775	54501	54593	86109	86109					0.13407437470914374
TFLVTQIND	9	Unmodified	_TFLVTQIND_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.8272094726562	2	525.776939	1049.53933	0.83048	0.00043665	-1.3519	-0.00071081	-0.52145	-0.00027416	525.7761400574493	98.121	1.266	98.119	97.68	98.946	-0.0020752					96	29	4	0	0	0	0.024374	1	12491	12491		32.812	10.853	1	2599000	+		78060	25112	54502	54594	86110	86110					0.01653732860791024
TFMELIDKGLL	11	Unmodified	_TFMELIDKGLL_					0	0	0			REV__PSMD1-ATP2C1|1|fusion;REV__nc|ENSG00000017260|P98194-8|ATP2C1	REV__PSMD1-ATP2C1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.71990966796875	3	427.237063	1278.68936	0.72059	0.00030786	2.7591	0.0011788	3.4797	0.0014867	427.23820033676805	21.76	0.38363	21.583	21.397	21.781	-0.17721					10	7	2	0	0	0	0.02477	1	692	692		12.433	0	1	11926	+		78061	37415;36437	54503	54595	86111	86111					0.06116336808236156
TFMGKCLKHI	10	Unmodified	_TFMGKCLKHI_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.314654	1176.61476	-0.32001	-0.00018859	-3.584	-0.0021121	-3.904	-0.0023007	589.312947892769	90.667	0.38411	90.529	90.279	90.663	-0.13824					12	8	2	0	0	0	0.03519	1	11090	11090		32.812	0	1	59151	+		78062	23780	54504	54596	86112	86112					0.03351295515813035
TFMLLIQLH	9	Unmodified	_TFMLLIQLH_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3355712890625	2	558.31772	1114.62089	0.21965	0.00012263	2.8095	0.0015686	3.0292	0.0016913	558.3193165357775	19.452	0.24704	19.291	19.134	19.381	-0.16079					6	4	2	0	0	0	0.024477	1	437	437		35.618	3.6634	1	14437	+		78063	20030	54505	54597	86113	86113					0.06816137019018242
TFNLDFWKL	9	Unmodified	_TFNLDFWKL_					0	0	0			REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.2883911132812	2	592.310949	1182.60735	-0.99427	-0.00058892	0.49573	0.00029363	-0.49854	-0.00029529	592.3123267345187	72.706	0.92597	72.508	71.869	72.795	-0.19811					32	21	3	0	0	0	0.024506	1	8533	8533		38.806	0	1	233500	+		78064	33150	54506	54598	86114	86114					0.023346025114051372
TFNLFFTIL	9	Unmodified	_TFNLFFTIL_					0	0	0		ENST00000476011.1_1_3:185330354-185331220:+|nuORF	ENST00000476011.1_1_3:185330354-185331220:+|nuORF	ENST00000476011.1_1_3:185330354-185331220:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2653198242188	2	558.310418	1114.60628	-0.62086	-0.00034663	0.2457	0.00013718	-0.37516	-0.00020946	558.3107175978771	83.821	0.82169	83.821	83.393	84.215	0					28	18	2	0	0	0	0.024427	1	10457	10457		34.173	2.2177	1	45134			78065	15078	54507	54599	86115	86115					0.053563881425361615
TFNRDKELL	9	Unmodified	_TFNRDKELL_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8292846679688	2	568.308938	1134.60332	-1.8274	-0.0010385	2.8577	0.0016241	1.0303	0.00058552	568.3109735913916	52.177	0.68803	51.908	51.474	52.162	-0.26903					32	18	2	0	0	0	0.024539	1	5401	5401		27.882	0	1	164770	+		78066	27707	54508	54600	86116	86116					0.04140513017705416
TFNRDKELL	9	Unmodified	_TFNRDKELL_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	568.308938	1134.60332	-0.44189	-0.00025113	-0.12869	-7.3134E-05	-0.57058	-0.00032427	568.3091278973578	51.617	0.44038	51.617	51.431	51.871	0	-0.076108	-0.0015244	NaN	49.442	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165580	+		78067	27707	54508	54600							0.04140513017705416
TFNRDKELL	9	Unmodified	_TFNRDKELL_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	568.308938	1134.60332	-1.7408	-0.00098933	1.4165	0.00080503	-0.32431	-0.00018431	568.309781829942	51.468	0.51945	51.555	51.264	51.783	0.087009	-0.13868	0.00023187	NaN	49.442	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299980	+		78068	27707	54508	54600							0.04140513017705416
TFNVVHLY	8	Unmodified	_TFNVVHLY_					0	0	0		nc|ENSG00000165810|Q6UXG8-2|BTNL9;nc|ENSG00000165810|Q6UXG8-3|BTNL9;ENSG00000165810|ENST00000327705|BTNL9	nc|ENSG00000165810|Q6UXG8-2|BTNL9	nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2824401855469	2	496.763635	991.512717	0.17566	8.7261E-05	-1.2392	-0.00061557	-1.0635	-0.00052831	496.7623504237093	22.327	0.41961	22.138	21.816	22.236	-0.18894					13	8	2	0	0	0	0.027866	1	757	757		31.955	2.7848	1	14168			78069	7470	54509	54601	86117	86117					0.016620887600765855
TFPFFSEGI	9	Unmodified	_TFPFFSEGI_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;TBC1D2-GABBR2|1|fusion	nc|ENSG00000095383|Q9BYX2-4|TBC1D2;TBC1D2-GABBR2|1|fusion	TBC1D2-GABBR2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.77099609375	2	522.755475	1043.4964	-0.067176	-3.5117E-05	-2.9189	-0.0015259	-2.9861	-0.001561	522.753880340059	52.414	0.20122	52.227	52.15	52.351	-0.18649					6	4	2	0	0	0	0.024294	1	5440	5440		45.952	1.5748	1	94826			78070	38057;2025	54510	54602	86118	86118					-0.023610371966469756
TFPGYTLDH	9	Unmodified	_TFPGYTLDH_					0	0	0			REV__ENST00000494263.5_1_2:219646839-219678911:+|nuORF	REV__ENST00000494263.5_1_2:219646839-219678911:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2564697265625	2	525.748182	1049.48181	-0.34647	-0.00018216	-0.25316	-0.0001331	-0.59963	-0.00031526	526.2509858241127	46.1	0.53413	45.839	45.666	46.2	-0.26118					14	13	2	0	0	0	0.024457	1	4408	4408		37.159	3.6435	1	156500	+		78071	23600	54511	54603	86119	86119					-0.04095109344825687
TFPHRMEP	8	Unmodified	_TFPHRMEP_					0	0	0		ENST00000565069.5_1_16:1027006-1031247:-|nuORF	ENST00000565069.5_1_16:1027006-1031247:-|nuORF	ENST00000565069.5_1_16:1027006-1031247:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8267517089844	2	507.744919	1013.47529	-0.01617	-8.2102E-06	3.2265	0.0016382	3.2103	0.00163	507.74655056243637	67.951	0.23959	67.662	67.47	67.71	-0.28835					8	5	2	0	0	0	0.027866	1	8084	8084		11.511	0	1	80539			78072	16912	54512	54604	86120	86120					-0.030913257771771896
TFPHTLQQVG	10	Unmodified	_TFPHTLQQVG_					0	0	0		ENST00000343348.10_1_5:115781916-115782288:-|nuORF	ENST00000343348.10_1_5:115781916-115782288:-|nuORF	ENST00000343348.10_1_5:115781916-115782288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7698974609375	2	564.29583	1126.57711	-0.28673	-0.0001618	-1.0763	-0.00060733	-1.363	-0.00076913	564.2956823199826	39.774	0.42258	39.624	39.473	39.896	-0.1497					20	10	3	0	0	0	0.03519	1	3376	3376		64.207	27.048	1	240190			78073	12528	54513	54605	86121	86121					0.01888243846201476
TFPHTLQQVG	10	Unmodified	_TFPHTLQQVG_					0	0	0		ENST00000343348.10_1_5:115781916-115782288:-|nuORF	ENST00000343348.10_1_5:115781916-115782288:-|nuORF	ENST00000343348.10_1_5:115781916-115782288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.769775390625	2	564.29583	1126.57711	-0.21382	-0.00012066	-1.2138	-0.00068493	-1.4276	-0.00080559	564.2955389902053	39.991	0.34964	39.766	39.541	39.891	-0.225					14	8	2	0	0	0	0.03519	1	3399	3399		64.207	28.589	1	117240			78074	12528	54513	54605	86122	86122					0.01888243846201476
TFPKLNWL	8	Unmodified	_TFPKLNWL_					0	0	0			REV__nc|ENSG00000126561|P42229-2|STAT5A	REV__nc|ENSG00000126561|P42229-2|STAT5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8036193847656	2	509.789653	1017.56475	-0.51766	-0.0002639	-0.29928	-0.00015257	-0.81695	-0.00041647	510.29148791782285	85.393	1.2016	85.335	84.361	85.563	-0.05761					34	28	2	0	0	0	0.027866	1	10601	10601		30.504	5.0535	1	144240	+		78075	22902	54514	54606	86123	86123					0.05667252173827819
TFPLARQIS	9	Unmodified	_TFPLARQIS_					0	0	0			REV__ENST00000565867.2_1_16:48395883-48396060:+|nuORF	REV__ENST00000565867.2_1_16:48395883-48396060:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.271240234375	2	516.795466	1031.57638	-0.59532	-0.00030766	3.8317	0.0019802	3.2364	0.0016725	516.7972007519544	48.565	0.77273	48.412	48.092	48.864	-0.15276					55	21	4	0	0	0	0.024506	1	5008	5008		23.042	1.0826	1	1080300	+		78076	35288	54515	54607	86124	86124					0.06185449197187154
TFPLRYEVD	9	Unmodified	_TFPLRYEVD_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.3128051757812	2	570.290214	1138.56587	0.39261	0.0002239	-1.5458	-0.00088153	-1.1532	-0.00065763	570.2890786652513	80.248	0.5853	80.042	79.799	80.385	-0.20633					35	13	3	0	0	0	0.024428	1	9628	9628		56.434	23.621	1	439400	+		78077	25043	54516	54608	86125	86125					0.0021342175209611014
TFPLRYEVD	9	Unmodified	_TFPLRYEVD_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3123779296875	2	570.290214	1138.56587	0.081634	4.6555E-05	-1.2005	-0.00068463	-1.1189	-0.00063807	570.2895445766645	80.212	0.66578	80.066	79.785	80.45	-0.146					32	15	3	0	0	0	0.024261	1	9613	9613		54.776	10.399	1	514900	+		78078	25043	54516	54608	86126	86126					0.0021342175209611014
TFPLRYEVD	9	Unmodified	_TFPLRYEVD_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	570.290214	1138.56587	0.33752	0.00019249	-1.7843	-0.0010176	-1.4468	-0.00082511	570.2890793137065	80.337	0.78864	80.099	79.621	80.409	-0.23784	0.030222	-0.00032742	NaN	54.776	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367280	+		78079	25043	54516	54608							0.0021342175209611014
TFPPVSSLDF	10	Unmodified	_TFPPVSSLDF_					0	0	0		nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3;ENST00000460505.5_1_3:49053470-49055997:-|nuORF;nc|ENSG00000178149|Q5D0E6-2|DALRD3;ENST00000498794.1_1_3:49053470-49053815:-|nuORF;ENST00000467457.5_1_3:49053470-49054225:-|nuORF;ENST00000472331.5_1_3:49053470-49054132:-|nuORF	nc|ENSG00000178149|Q5D0E6-4|DALRD3	nc|ENSG00000178149|Q5D0E6-4|DALRD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	556.2794799804688	2	555.279315	1108.54408	-0.16517	-9.1717E-05	3.2849	0.0018241	3.1198	0.0017323	555.2801384403408	42.666	0.41205	42.552	42.28	42.692	-0.11353					14	10	2	0	0	0	0.03519	1	3827	3827		35.618	0	1	193010			78080	8796	54517	54609	86127	86127					-0.005853829964962642
TFPTLRSMI	9	Unmodified	_TFPTLRSMI_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.8145141601562	2	533.291702	1064.56885	0.050553	2.6959E-05	3.6116	0.0019261	3.6622	0.001953	533.7960830763632	104.06	0.34331	103.89	103.64	103.98	-0.16791					11	7	2	0	0	0	0.023655	1	12941	12941		79.713	10.926	1	26213			78081	5677	54518	54610	86128	86128					0.03914973605265004
TFQNGLCYEYM	11	Unmodified	_TFQNGLCYEYM_					0	0	0		nc|ENSG00000143845|Q9NVF9-3|ETNK2;ENSG00000143845|ENST00000367202|ETNK2;nc|ENSG00000143845|Q9NVF9-2|ETNK2	nc|ENSG00000143845|Q9NVF9-3|ETNK2	nc|ENSG00000143845|Q9NVF9-3|ETNK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.75091552734375	3	456.858146	1367.55261	0.64481	0.00029459	-3.4558	-0.0015788	-2.811	-0.0012842	456.8564918539483	41.936	0.46503	41.936	41.722	42.187	0					25	13	2	0	0	0	0.02477	1	3779	3779		22.562	10.129	1	528600			78082	5694	54519	54611	86129	86129					-0.1164652041379668
TFQQLITYKVI	11	Unmodified	_TFQQLITYKVI_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.93280029296875	3	451.930739	1352.77039	0.96808	0.00043751	3.4199	0.0015456	4.388	0.0019831	451.9321669232396	97.087	2.2013	96.951	95.725	97.926	-0.1367					165	50	4	0	0	0	1.0764	1	11980	11980		17.833	2.4957	1	596220			78083	3341	54520	54612	86130	86130					0.1081136084260379
TFQRRNSE	8	Unmodified	_TFQRRNSE_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2815551757812	2	519.259779	1036.50501	0.072753	3.7777E-05	3.7162	0.0019297	3.789	0.0019675	519.7637700680207	48.457	0.83138	48.273	47.905	48.736	-0.18344					57	22	3	0	0	0	0.027866	1	4825	4825		31.53	1.2121	1	1660800			78084	9361	54521	54613	86131	86131					-0.011786705074882775
TFQRRNSE	8	Unmodified	_TFQRRNSE_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.259779	1036.50501	-0.70154	-0.00036428	4.1879	0.0021746	3.4864	0.0018103	519.2613293992123	48.353	0.37733	48.2	48.091	48.469	-0.15301	-0.036738	0.00042722	NaN	47.657	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144180			78085	9361	54521	54613							-0.011786705074882775
TFQSGIAR	8	Unmodified	_TFQSGIAR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	439.24237060546875	2	440.237784	878.461016	-0.75249	-0.00033128	0.70478	0.00031027	-0.047709	-2.1003E-05	440.23806922482044	44.867	0.62733	44.614	44.354	44.981	-0.25252					33	15	3	0	0	0	0.027866	1	4205	4205		7.6903	0	1	640290			78086	6479;18400	54522	54614	86132	86132					0.016923450661806783
TFQSPGSYGI	10	Unmodified	_TFQSPGSYGI_					0	0	0		ENST00000434410.5_2_3:50617853-50617988:+|nuORF	ENST00000434410.5_2_3:50617853-50617988:+|nuORF	ENST00000434410.5_2_3:50617853-50617988:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.822021484375	2	528.753464	1055.49238	-0.088703	-4.6902E-05	-4.017	-0.002124	-4.1057	-0.0021709	528.751318216098	32.473	0.49213	32.536	32.352	32.845	0.062885					17	12	2	0	0	0	0.03519	1	2222	2222		21.686	0	1	127960			78087	14243	54523	54615	86133	86133					-0.03315126690381476
TFQTLLNTI	9	Unmodified	_TFQTLLNTI_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.7589111328125	2	525.795132	1049.57571	-0.020119	-1.0578E-05	1.0136	0.00053294	0.99346	0.00052236	525.795638349274	57.18	0.1113	56.955	56.887	56.998	-0.2248					4	2	2	0	0	0	0.024541	1	6213	6213		14.137	0.36179	1	77198			78088	7034	54524	54616	86134	86134					0.052906097574805244
TFQTLLNTI	9	Unmodified	_TFQTLLNTI_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.795132	1049.57571	-0.23499	-0.00012355	-0.14596	-7.6747E-05	-0.38095	-0.0002003	525.7944844051807	57.23	0.22705	57.326	57.165	57.392	0.095306	0.18519	-0.00048795	NaN	14.137	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96693			78089	7034	54524	54616							0.052906097574805244
TFQVQWLHAF	10	Unmodified	_TFQVQWLHAF_					0	0	0		nc|ENSG00000142166|P17181-2|IFNAR1;nc|ENSG00000142166|P17181-4|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.235107421875	3	426.220624	1275.64004	-0.19196	-8.1817E-05	4.3045	0.0018347	4.1125	0.0017528	426.22295213316625	27.854	0.44866	27.935	27.759	28.208	0.081291					21	10	3	0	0	0	0.03519	1	1541	1541		12.207	0	1	154090			78090	5539	54525	54617	86135	86135					0.013248096342749704
TFRDISEDL	9	Unmodified	_TFRDISEDL_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.7710571289062	2	548.269478	1094.5244	-0.53773	-0.00029482	3.6135	0.0019812	3.0758	0.0016864	548.2710757344622	104.14	0.18557	104.01	103.91	104.1	-0.12927					6	5	2	0	0	0	0.024447	1	12966	12966		25.574	0	1	81640			78091	2812	54526	54618	86136	86136					-0.019077590072583916
TFRDVAVFF	9	Unmodified	_TFRDVAVFF_					0	0	0		ENSG00000234284|ENST00000444149|ZNF879;ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant;ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000234284|ENST00000444149|ZNF879;ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	ZNF354C|p.L539Tfs*9|1|0.06|ENSG00000177932|chr5:179080044-179080045|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.7800903320312	2	551.290017	1100.56548	-0.5128	-0.0002827	-0.8351	-0.00046038	-1.3479	-0.00074308	551.2894059482705	45.074	0.7561	45.118	44.824	45.58	0.043877					37	21	4	0	0	0	0.024477	1	4313	4313		27.882	0	1	1872900			78092	8776;10718	54527	54619	86137	86137					0.019220468228922982
TFREFALSE	9	Unmodified	_TFREFALSE_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.3118896484375	2	550.274564	1098.53457	2.6145	0.0014387	4.1964	0.0023092	6.8109	0.0037479	550.2768011657814	19.132	0.54289	19.198	18.945	19.488	0.066195					15	10	2	0	0	0	0.024541	1	364	364		14.865	0	1	28373			78093	8503	54528	54620	86138	86138					-0.010751512820206699
TFRKLFKP	8	Unmodified	_TFRKLFKP_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2655029296875	2	518.818744	1035.62294	0.093051	4.8277E-05	3.4999	0.0018158	3.5929	0.0018641	518.820257103292	51.275	0.6908	50.998	50.702	51.393	-0.27643					34	17	3	0	0	0	0.027866	1	5303	5303		35.618	1.4457	1	649300	+		78094	22046	54529	54621	86139	86139					0.10654933819137113
TFRNKEVK	8	Unmodified	_TFRNKEVK_					0	0	0		ENSG00000181939|ENST00000642128|OR4C15	ENSG00000181939|ENST00000642128|OR4C15	ENSG00000181939|ENST00000642128|OR4C15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2535400390625	2	511.293091	1020.57163	-0.1883	-9.6276E-05	-3.8045	-0.0019452	-3.9928	-0.0020415	511.2911880084433	57.242	0.62217	57.017	56.661	57.283	-0.2248					25	16	2	0	0	0	0.027866	1	6208	6208		25.45	0	1	800660			78095	9083	54530	54622	86140	86140					0.06216565054421608
TFRRHMIS	8	Unmodified	_TFRRHMIS_					0	0	0		nc|ENSG00000186300|Q8NEP9-2|ZNF555;nc|ENSG00000186300|Q8NEP9-4|ZNF555;ENSG00000186300|ENST00000334241|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	nc|ENSG00000186300|Q8NEP9-2|ZNF555	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3037109375	2	524.27946	1046.54437	-0.52188	-0.00027361	-2.7921	-0.0014638	-3.3139	-0.0017374	524.277111506257	85.504	0.49886	85.447	85.145	85.643	-0.057617					31	11	3	0	0	0	0.027866	1	10680	10680		30.504	0	1	940370			78096	9537	54531	54623	86141	86141					0.022957582423941858
TFSHKSSLT	9	Unmodified	_TFSHKSSLT_					0	0	0		ENSG00000196417|ENST00000396408|ZNF765;ENSG00000160336|ENST00000684525|ZNF761	ENSG00000196417|ENST00000396408|ZNF765	ENSG00000196417|ENST00000396408|ZNF765	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.2892761230469	2	504.261456	1006.50836	0.16635	8.3884E-05	-0.25204	-0.00012709	-0.085684	-4.3207E-05	504.26121678236393	70.962	0.65417	70.69	70.493	71.147	-0.27185					39	14	4	0	0	0	0.024511	1	8316	8316		40.778	7.9657	1	1238500			78097	6808	54532	54624	86142	86142					0.005365795465081646
TFSIISTI	8	Unmodified	_TFSIISTI_					0	0	0		ENST00000279907.11_2_12:100476848-100476887:-|nuORF	ENST00000279907.11_2_12:100476848-100476887:-|nuORF	ENST00000279907.11_2_12:100476848-100476887:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.2168884277344	2	441.252569	880.490584	-0.98746	-0.00043572	-2.324	-0.0010255	-3.3115	-0.0014612	441.25145580766963	37.904	0.36552	37.683	37.466	37.832	-0.22149					14	9	2	0	0	0	0.027866	1	3042	3042		30.504	12.179	1	62568			78098	11710	54533	54625	86143	86143					0.04555864291671696
TFSMSTTDTP	10	Unmodified	_TFSMSTTDTP_					0	0	0			REV__ENST00000451057.1_1_7:156990296-156991186:-|nuORF	REV__ENST00000451057.1_1_7:156990296-156991186:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.244140625	2	544.234247	1086.45394	-0.63167	-0.00034378	1.9282	0.0010494	1.2966	0.00070564	544.2358881981709	64.471	0.786	64.236	63.982	64.768	-0.2345					24	19	2	0	0	0	0.03519	1	7335	7335		34.173	7.4796	1	150790	+		78099	32717	54534	54626	86144	86144					-0.08582800387216594
TFSPKWIS	8	Unmodified	_TFSPKWIS_					0	0	0			REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	REV__ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.26263427734375	2	483.258185	964.501818	-0.80189	-0.00038752	2.9219	0.001412	2.12	0.0010245	483.25946970514343	35.765	1.1582	35.765	35.455	36.613	0					61	31	3	0	0	0	0.027866	1	2790	2790		33.516	0	1	533840	+		78100	31462	54535	54627	86145	86145					0.01814686385796449
TFSPSTLLV	9	Unmodified	_TFSPSTLLV_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7712097167969	2	482.771126	963.527698	-0.089514	-4.3215E-05	0.52068	0.00025137	0.43116	0.00020815	482.77109662965046	95.842	0.83726	95.842	95.519	96.356	0					44	19	4	0	0	0	0.96855	1	12240	12240		26.796	0	1	1053200			78101	9072	54536	54628	86146	86146					0.044475358374370444
TFSPTMELDV	10	Unmodified	_TFSPTMELDV_					0	0	0			REV__CDH26|p.R124L|1|0.26|ENSG00000124215|chr20:59972101-59972101|G/T|missense_variant	REV__CDH26|p.R124L|1|0.26|ENSG00000124215|chr20:59972101-59972101|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3123779296875	2	570.26809	1138.52163	0.051551	2.9398E-05	-1.4187	-0.00080902	-1.3671	-0.00077962	570.2669848385912	80.425	0.33232	80.279	80.035	80.368	-0.146					12	7	2	0	0	0	0.03519	1	9613	9613		34.173	1.3601	1	85916	+		78102	19281	54537	54629	86147	86147					-0.04209350456426364
TFSQPGPFWLV	11	Unmodified	_TFSQPGPFWLV_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.8890380859375	3	426.888763	1277.64446	-0.1939	-8.2772E-05	1.048	0.00044737	0.85409	0.0003646	426.88909505527636	22.182	0.79036	21.997	21.764	22.554	-0.18539					33	16	4	0	0	0	1.0408	1	756	756		27.644	0.59661	1	269900	+		78103	23100	54538	54630	86148	86148					0.01674274057177172
TFSRISALVI	10	Unmodified	_TFSRISALVI_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8298950195312	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.80817	2	11325	11229;11325		60.118	12.461	1	4896800			78104	10124	54539	54631	86149;86150	86150					0.10094577919790026
TFSRISALVI	10	Unmodified	_TFSRISALVI_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.830078125	2	553.832049	1105.64954	0.11487	6.3616E-05	-3.889	-0.0021538	-3.7741	-0.0020902	553.8297655653664	89.127	2.8861	89.105	88.139	91.025	-0.021637					330	68	6	0	0	0	0.94316	2	11200	11200;11224		51.193	8.3284	1	4870500			78105	10124	54539	54631	86151;86152	86151					0.10094577919790026
TFSRISALVI	10	Unmodified	_TFSRISALVI_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8302001953125	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0002	2	11256	11208;11256		45.972	1.981	1	4967900			78106	10124	54539	54631	86153;86154	86154					0.10094577919790026
TFSRISALVI	10	Unmodified	_TFSRISALVI_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8299560546875	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	1.0122	1	10634	10634		44.377	11.565	1	1711900			78107	10124	54539	54631	86155	86155					0.10094577919790026
TFSRISALVI	10	Unmodified	_TFSRISALVI_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0616	1	10922	10922		37.812	2.1932	1	6583300			78108	10124	54539	54631	86156	86156					0.10094577919790026
TFSRISALVI	10	Unmodified	_TFSRISALVI_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8302612304688	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.94316	2	10977	10870;10977		51.193	3.5354	1	6921700			78109	10124	54539	54631	86157;86158	86158					0.10094577919790026
TFSVSPIEA	9	Unmodified	_TFSVSPIEA_					0	0	0		MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	MTUS1|p.T987Cfs*53|1|0.37|ENSG00000129422|chr8:17656010-17656013|TGTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.776611328125	2	475.745108	949.475663	1.378	0.0006556	2.7346	0.001301	4.1126	0.0019565	475.7463396773746	71.92	0.33627	71.92	71.68	72.017	0					16	8	2	0	0	0	0.024457	1	8710	8710		10.265	3.9526	1	151760			78110	4346;16047	54540	54632	86159	86159					-0.001096275763416088
TFSWCMRW	8	Unmodified	_TFSWCMRW_					0	0	0			REV__ENST00000368175.7_1_1:157771893-157771935:-|nuORF	REV__ENST00000368175.7_1_1:157771893-157771935:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2589111328125	2	558.741322	1115.46809	0.0012087	6.7533E-07	-2.2038	-0.0012313	-2.2026	-0.0012307	558.7396694393321	79.351	0.21072	79.2	79.11	79.321	-0.15051					6	4	2	0	0	0	0.027866	1	9470	9470		23.042	0	1	42819	+		78111	31044	54541	54633	86160	86160					-0.08502381649236668
TFSYSGSLVF	10	Unmodified	_TFSYSGSLVF_					0	0	0			REV__nc|ENSG00000147689|Q86UY5-2|FAM83A	REV__nc|ENSG00000147689|Q86UY5-2|FAM83A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7484130859375	2	554.27149	1106.52843	-0.96592	-0.00053538	0.51307	0.00028438	-0.45285	-0.000251	554.2709752482546	43.474	0.38942	43.248	42.989	43.379	-0.22597					15	10	2	0	0	0	0.03519	1	3985	3985		20.947	0	1	189950	+		78112	24578	54542	54634	86161	86161					-0.020576695135105183
TFTAVTKETI	10	Unmodified	_TFTAVTKETI_					0	0	0		nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MSMS	OPSCC_39_ClassI_Rep-3	3	555.8037719726562	2	555.805697	1109.59684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.82	1	101.81	101.31	102.31	-0.0054474								0	0	0	0.74072	1	12962	12962		37.812	4.2959	1				78113	6693	54543	54635	86162	86162					0.04642575066327481
TFTDKLYN	8	Unmodified	_TFTDKLYN_					0	0	0			REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2	REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2497253417969	2	501.250557	1000.48656	-0.045881	-2.2998E-05	-3.9214	-0.0019656	-3.9672	-0.0019886	501.2485766471276	104.85	0.58165	104.85	104.54	105.13	0.00096893					47	18	3	0	0	0	1.0239	1	13412	13412		33.516	1.5607	1	312450	+		78114	23245	54544	54636	86163	86163					-0.013662252020480992
TFTHFINNYE	10	Unmodified	_TFTHFINNYE_					0	0	0			REV__ENST00000545363.6_1_12:9808558-9809281:+|nuORF	REV__ENST00000545363.6_1_12:9808558-9809281:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.2197265625	3	429.199777	1284.5775	-0.43989	-0.0001888	-0.78898	-0.00033863	-1.2289	-0.00052743	429.1997619334976	27.997	1.1517	27.829	27.23	28.381	-0.16816					43	27	3	0	0	0	0.03519	1	1522	1522		41.427	24.26	1	505170	+		78115	34823	54545	54637	86164	86164					-0.05340381224550583
TFTKLDPQGEY	11	Unmodified	_TFTKLDPQGEY_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.2663269042969	3	433.546954	1297.61903	-0.19718	-8.5486E-05	3.5818	0.0015529	3.3846	0.0014674	433.5481393442127	24.871	0.69337	24.645	24.325	25.018	-0.22683					42	15	3	0	0	0	0.02473	1	1121	1121		23.514	0	1	434070		+	78116	544	54546	54638	86165	86165					-0.017872452558776786
TFTKLDPQGEY	11	Unmodified	_TFTKLDPQGEY_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2663269042969	3	433.546954	1297.61903	-0.0058202	-2.5233E-06	2.7632	0.001198	2.7574	0.0011955	433.548089345597	24.638	1.2088	24.463	23.612	24.821	-0.17484					40	27	2	0	0	0	0.02473	1	1077	1077		15.921	0	1	403620		+	78117	544	54546	54638	86166	86166					-0.017872452558776786
TFTKLDPQGEY	11	Unmodified	_TFTKLDPQGEY_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2663269042969	3	433.546954	1297.61903	2.2216	0.00096315	0.53262	0.00023092	2.7542	0.0011941	433.5471577831822	24.853	1.1831	24.682	23.724	24.907	-0.17151					40	26	2	0	0	0	0.02478	1	1065	1065		31.722	0	1	311340		+	78118	544	54546	54638	86167	86167					-0.017872452558776786
TFTLGKNRISK	11	Unmodified	_TFTLGKNRISK_					0	0	0		nc|ENSG00000161298|Q96SR6-3|ZNF382;nc|ENSG00000161298|Q96SR6-2|ZNF382;ENSG00000161298|ENST00000292928|ZNF382	nc|ENSG00000161298|Q96SR6-3|ZNF382	nc|ENSG00000161298|Q96SR6-3|ZNF382	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.520751953125	3	422.250583	1263.72992	0.073927	3.1216E-05	1.0886	0.00045965	1.1625	0.00049086	422.25091305510534	31.714	0.72121	31.473	31.185	31.906	-0.24109					42	17	4	0	0	0	0.024735	1	2144	2144		4.8861	0	1	205670			78119	6871	54547	54639	86168	86168					0.10860439242833309
TFTLLAASSL	10	Unmodified	_TFTLLAASSL_					0	0	0		nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7935791015625	2	512.289682	1022.56481	4.6509	0.0023826	3.8101	0.0019519	8.461	0.0043345	512.2916951513353	17.664	0.94	17.724	17.509	18.449	0.06036					29	22	2	0	0	0	1.1197	1	174	174		20.947	2.6225	1	12438			78120	5654	54548	54640	86169	86169					0.05443207383189019
TFTLLAASSL	10	Unmodified	_TFTLLAASSL_					0	0	0		nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	512.289682	1022.56481	3.1634	0.0016206	5.5187	0.0028272	8.6821	0.0044478	512.2924081853627	17.916	0.43981	17.916	17.647	18.087	0	0.058416	0.0001307	NaN	20.947	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25353			78121	5654	54548	54640							0.05443207383189019
TFTLLAASSL	10	Unmodified	_TFTLLAASSL_					0	0	0		nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	512.289682	1022.56481	0.23412	0.00011994	8.1161	0.0041578	8.3502	0.0042777	512.2937594666352	18.064	0.58993	17.932	17.712	18.302	-0.13147	0.075026	0.0027919	NaN	20.947	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37439			78122	5654	54548	54640							0.05443207383189019
TFTLPILW	8	Unmodified	_TFTLPILW_					0	0	0		ENST00000449606.5_1_16:23534653-23534791:-|nuORF	ENST00000449606.5_1_16:23534653-23534791:-|nuORF	ENST00000449606.5_1_16:23534653-23534791:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.76611328125	2	495.786579	989.558604	-1.0834	-0.00053715	-4.2573	-0.0021107	-5.3407	-0.0026479	495.78426549487176	55.805	0.62564	55.649	55.386	56.011	-0.15655					27	16	2	0	0	0	0.027866	1	6068	6068		35.201	0	1	204320			78123	14502	54549	54641	86170	86170					0.0634073394232928
TFTVGFLSV	9	Unmodified	_TFTVGFLSV_					0	0	0			REV__ENSG00000054277|ENST00000366554|OPN3	REV__ENSG00000054277|ENST00000366554|OPN3	MSMS	OPSCC_39_ClassI_Rep-1	1	485.7659606933594	2	485.765843	969.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.79	1	101.79	101.29	102.29	0								0	0	0	0.47068	1	13036	13036		56.721	3.3696	1		+		78124	20187	54550	54642	86171	86171					0.031155531830108885
TFTVIRTI	8	Unmodified	_TFTVIRTI_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.787109375	2	475.78711	949.559667	0.58463	0.00027816	-0.66578	-0.00031677	-0.081147	-3.8609E-05	475.78675770961814	85.794	1.9967	85.599	84.467	86.464	-0.19508					98	46	4	0	0	0	1.0009	1	10394	10394		37.159	1.9584	1	5254000	+		78125	28369	54551	54643	86172	86172					0.08286948311251763
TFTYIHSRDT	10	Unmodified	_TFTYIHSRDT_					0	0	0			REV__ENSG00000204599|ENST00000396551|TRIM39	REV__ENSG00000204599|ENST00000396551|TRIM39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2144775390625	3	414.20341	1239.5884	0.31232	0.00012936	-4.3394	-0.0017974	-4.0271	-0.001668	414.2017815533346	24.275	0.26402	24.275	24.209	24.474	0					9	5	2	0	0	0	0.03519	1	1049	1049		31.634	0	1	44688	+		78126	28623	54552	54644	86173	86173					-0.02180978850287829
TFVASNAVGQV	11	Unmodified	_TFVASNAVGQV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2958374023438	2	546.787838	1091.56112	0.1215	6.6433E-05	-0.48125	-0.00026314	-0.35976	-0.00019671	547.2889294285575	57.179	0.87728	56.977	56.443	57.32	-0.20209					68	23	4	0	0	0	0.024732	1	6281	6281		25.574	1.0549	1	2646700			78127	6479;18400	54553	54645	86174	86174					0.01900537609321873
TFVAWESY	8	Unmodified	_TFVAWESY_					0	0	0			REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	REV__DSEL|p.N884Qfs*3|1|0.18|ENSG00000171451|chr18:67511990-67511991|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.763916015625	2	501.732	1001.44945	-0.32858	-0.00016486	-1.8797	-0.00094313	-2.2083	-0.001108	502.2331210116368	31.907	0.39964	31.907	31.63	32.03	0					11	9	2	0	0	0	0.027866	1	2149	2149		19.36	0	1	72545	+		78128	19711	54554	54646	86175	86175					-0.05121896747812116
TFVELCFAPS	10	Unmodified	_TFVELCFAPS_					0	0	0		ENST00000493556.1_1_22:46732342-46732459:+|nuORF	ENST00000493556.1_1_22:46732342-46732459:+|nuORF	ENST00000493556.1_1_22:46732342-46732459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.2798461914062	2	557.267893	1112.52123	-0.67531	-0.00037633	-3.2947	-0.0018361	-3.97	-0.0022124	557.2660416072634	42.911	0.72997	42.686	42.143	42.873	-0.22597					31	18	2	0	0	0	0.03519	1	3856	3856		42.396	6.7778	1	253310			78129	15506	54555	54647	86176	86176					-0.03052725385600752
TFVKLNKTSI	10	Unmodified	_TFVKLNKTSI_					0	0	0		ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENST00000461190.1_1_3:123871117-123871351:-|nuORF	ENST00000461190.1_1_3:123871117-123871351:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.843017578125	2	575.845156	1149.67576	-0.77612	-0.00044693	-2.9809	-0.0017166	-3.7571	-0.0021635	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0992	1	11365	11365		32.812	0	1	6382400			78130	14677	54556	54648	86177	86177					0.10690847091291289
TFVLKRYSL	9	Unmodified	_TFVLKRYSL_					0	0	0			REV__ENST00000532161.5_2_11:102322944-102323061:-|nuORF	REV__ENST00000532161.5_2_11:102322944-102323061:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.26806640625	2	563.834591	1125.65463	-0.15098	-8.5127E-05	-0.27253	-0.00015366	-0.42351	-0.00023879	563.8342378921278	59.863	0.64202	59.615	59.377	60.019	-0.24842					41	16	4	0	0	0	0.024367	1	6626	6626		36.447	0	1	1202700	+		78131	34576	54557	54649	86178	86178					0.0968288178239618
TFVLPLLLF	9	Unmodified	_TFVLPLLLF_					0	0	0		ENSG00000095596|ENST00000224356|CYP26A1	ENSG00000095596|ENST00000224356|CYP26A1	ENSG00000095596|ENST00000224356|CYP26A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8348999023438	2	531.833529	1061.6525	-0.11879	-6.3177E-05	2.7632	0.0014696	2.6444	0.0014064	531.8348666348113	104.43	0.44508	104.42	104.25	104.7	-0.0032196					23	10	3	0	0	0	0.97516	1	13343	13343		25.45	1.2474	1	172430			78132	2032	54558	54650	86179	86179					0.12414453044607399
TFVNRVKL	8	Unmodified	_TFVNRVKL_					0	0	0			REV__ENST00000524683.5_1_11:121174081-121174345:+|nuORF	REV__ENST00000524683.5_1_11:121174081-121174345:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.7640686035156	2	488.800552	975.58655	-0.54871	-0.00026821	0.64196	0.00031379	0.093257	4.5584E-05	488.80068145674693	43.306	0.64521	43.08	42.873	43.518	-0.22597					23	17	2	0	0	0	0.027866	1	3935	3935		12.207	0	1	147450	+		78133	34392	54559	54651	86180	86180					0.0977805692241418
TFVQALVSLL	10	Unmodified	_TFVQALVSLL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.2890625	2	545.828975	1089.6434	-1.6796	-0.00091676	4.2105	0.0022982	2.531	0.0013815	545.8311904831089	51.069	0.96395	51.156	50.785	51.749	0.087006					44	26	2	0	0	0	0.03519	1	5287	5287		52.937	11.51	1	200770	+		78134	21973	54560	54652	86181	86181					0.10216059688286805
TFVQTLLCD	9	Unmodified	_TFVQTLLCD_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.771728515625	2	520.260068	1038.50558	-0.18494	-9.6216E-05	-3.302	-0.0017179	-3.487	-0.0018141	520.2583112229803	72.232	1.3204	72.034	71.39	72.71	-0.1981					43	31	2	0	0	0	0.024466	1	8538	8538		31.53	3.2755	1	161910	+		78135	23584	54561	54653	86182	86182					-0.012130119026323882
TFVSLGVLIT	10	Unmodified	_TFVSLGVLIT_					0	0	0			REV__ENST00000467600.5_1_2:114386183-114392789:+|nuORF	REV__ENST00000467600.5_1_2:114386183-114392789:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.79541015625	2	525.3157	1048.61685	0.14259	7.4903E-05	-0.58064	-0.00030502	-0.43806	-0.00023012	525.3151303551274	81.763	0.75211	81.57	81.05	81.802	-0.19334					23	17	2	0	0	0	0.03519	1	9787	9787		19.997	13.261	1	180830	+		78136	33081	54562	54654	86183	86183					0.09448370796940253
TFVSLGVLIT	10	Unmodified	_TFVSLGVLIT_					0	0	0			REV__ENST00000467600.5_1_2:114386183-114392789:+|nuORF	REV__ENST00000467600.5_1_2:114386183-114392789:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.3157	1048.61685	0.15082	7.9226E-05	-0.36766	-0.00019314	-0.21684	-0.00011391	525.3152558985124	81.826	0.54614	81.597	81.188	81.734	-0.2289	0.016738	-9.1643E-05	NaN	14.137	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95127	+		78137	33081	54562	54654							0.09448370796940253
TFVSLGVLIT	10	Unmodified	_TFVSLGVLIT_					0	0	0			REV__ENST00000467600.5_1_2:114386183-114392789:+|nuORF	REV__ENST00000467600.5_1_2:114386183-114392789:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.3157	1048.61685	-0.54041	-0.00028388	0.0084204	4.4234E-06	-0.53199	-0.00027946	525.3155803248111	81.717	0.54915	81.574	81.233	81.782	-0.14249	-0.0060736	0.00030348	NaN	14.137	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128990	+		78138	33081	54562	54654							0.09448370796940253
TFVSTLPPP	9	Unmodified	_TFVSTLPPP_					0	0	0			REV__ENSG00000110713|ENST00000324932|NUP98	REV__ENSG00000110713|ENST00000324932|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.29010009765625	2	479.765843	957.517133	0.20842	9.9993E-05	1.5041	0.00072163	1.7125	0.00082162	479.7662642137032	25.462	0.58057	25.542	25.254	25.835	0.08009					24	13	3	0	0	0	0.024487	1	1168	1168		24.203	5.8783	1	129220	+		78139	21869	54563	54655	86184	86184					0.03667553183004202
TFVTYTVY	8	Unmodified	_TFVTYTVY_					0	0	0		nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF	nc|ENSG00000163636|Q15008-3|PSMD6	nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3004150390625	2	497.250026	992.485499	-0.872	-0.0004336	-2.2353	-0.0011115	-3.1073	-0.0015451	497.24885699039686	64.942	0.60239	64.74	64.461	65.063	-0.20254					22	14	2	0	0	0	0.027866	1	7369	7369		18.324	0	1	80744			78140	7122	54564	54656	86185	86185					-0.01104439570951854
TFVVLMRSLVT	11	Unmodified	_TFVVLMRSLVT_					0	0	0		STRA6|p.L379V|1|0.22|ENSG00000137868|chr15:74185011-74185011|G/C|missense_variant	STRA6|p.L379V|1|0.22|ENSG00000137868|chr15:74185011-74185011|G/C|missense_variant	STRA6|p.L379V|1|0.22|ENSG00000137868|chr15:74185011-74185011|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.369140625	2	633.367941	1264.72133	0.68614	0.00043458	1.2689	0.00080368	1.955	0.0012383	633.3686922361071	98.61	0.99169	98.486	98.154	99.146	-0.12413					51	23	3	0	0	0	1.0392	1	12247	12247		28.081	0.19925	1	268360			78141	37975	54565	54657	86186	86186					0.09955749282016768
TFWGSLKNI	9	Unmodified	_TFWGSLKNI_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8128662109375	2	533.290017	1064.56548	-0.22295	-0.0001189	3.1329	0.0016708	2.91	0.0015519	533.2913752559443	104.17	0.35651	104.17	103.98	104.34	-0.0032196					15	8	2	0	0	0	0.024457	1	13270	13270		29.15	11.785	1	91278			78142	8932	54566	54658	86187	86187					0.03578046822894976
TFWPAPSW	8	Unmodified	_TFWPAPSW_					0	0	0			REV__ENST00000495653.1_1_3:47450801-47451197:+|nuORF	REV__ENST00000495653.1_1_3:47450801-47451197:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.76611328125	2	496.237253	990.459953	-0.63441	-0.00031482	-0.27351	-0.00013573	-0.90792	-0.00045054	496.237482689287	56.3	0.36254	56.143	55.933	56.295	-0.15656					12	8	2	0	0	0	0.027866	1	6068	6068		30.504	13.139	1	138320	+		78143	33808	54567	54659	86188	86188					-0.03565869302735791
TFWPGLVN	8	Unmodified	_TFWPGLVN_					0	0	0			REV__ENST00000563271.5_1_16:67262538-67263013:+|nuORF;REV__ENST00000562235.5_1_16:67262534-67263013:+|nuORF	REV__ENST00000563271.5_1_16:67262538-67263013:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2721252441406	2	467.245078	932.475603	1.2125	0.00056652	-3.3233	-0.0015528	-2.1108	-0.00098627	467.2434742935842	36.312	0.69988	36.114	35.876	36.576	-0.19829					25	17	2	0	0	0	0.027866	1	2821	2821		25.45	0	1	148630	+		78144	35218;35191	54568	54660	86189	86189					0.006664172143246105
TFWSVTGYG	9	Unmodified	_TFWSVTGYG_					0	0	0		chr7:144259632-144272445|429|14.99|0.0|20.52|-|0|OR2A7,ARHGEF34P|1	chr7:144259632-144272445|429|14.99|0.0|20.52|-|0|OR2A7,ARHGEF34P|1	chr7:144259632-144272445|429|14.99|0.0|20.52|-|0|OR2A7,ARHGEF34P|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7823486328125	2	509.23745	1016.46035	0.049012	2.4959E-05	3.1353	0.0015966	3.1843	0.0016216	509.23894355876354	89.104	1.4782	88.967	88.44	89.918	-0.13761					63	34	2	0	0	0	0.024487	1	10864	10864		31.955	8.9124	1	257760			78145	417	54569	54661	86190	86190					-0.047224943735159286
TFYGMSYIY	9	Unmodified	_TFYGMSYIY_					0	0	0			REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF	REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.7542114257812	2	572.754618	1143.49468	-0.5736	-0.00032853	1.0722	0.00061411	0.4986	0.00028558	572.7553304950978	52.225	0.72401	52.106	51.796	52.52	-0.11875					47	18	3	0	0	0	0.43973	1	5407	5407		63.306	5.495	1	2840000	+		78146	32771	54570	54662	86191	86191					-0.07132414276907184
TFYGMSYIY	9	Unmodified	_TFYGMSYIY_					0	0	0			REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF	REV__ENST00000454857.5_1_10:119966135-119966366:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.75439453125	2	572.754618	1143.49468	-0.20445	-0.0001171	0.33133	0.00018977	0.12688	7.2671E-05	572.7547731031191	52.295	1.0213	52.111	51.852	52.874	-0.18405					56	25	4	0	0	0	0.31247	1	5412	5412		73.975	10.668	1	2789000	+		78147	32771	54570	54662	86192	86192					-0.07132414276907184
TFYKQLPQ	8	Unmodified	_TFYKQLPQ_					0	0	0		ENSG00000134463|ENST00000379215|ECHDC3;nc|ENSG00000134463|Q96DC8-2|ECHDC3;ECHDC3|p.D262N|1|0.32|ENSG00000134463|chr10:11763416-11763416|G/A|missense_variant	ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2992553710938	2	512.776742	1023.53893	1.6163	0.00082882	-3.325	-0.001705	-1.7087	-0.00087617	512.7749075027216	23.405	0.81807	23.214	22.711	23.529	-0.19117					23	18	2	0	0	0	0.027866	1	865	865		42.474	0	1	95811			78148	4799	54571	54663	86193	86193					0.028103579315711613
TFYLFFNI	8	Unmodified	_TFYLFFNI_					0	0	0			REV__ENST00000359513.8_1_11:46695863-46696103:+|nuORF	REV__ENST00000359513.8_1_11:46695863-46696103:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2796630859375	2	532.776211	1063.53787	-0.16972	-9.0421E-05	-3.0372	-0.0016181	-3.2069	-0.0017086	532.7739599104843	80.33	1.2339	80.124	79.843	81.077	-0.20633					46	29	2	0	0	0	0.027866	1	9750	9750		37.159	0	1	173530	+		78149	30882	54572	54664	86194	86194					0.008641435626714156
TFYLVGCYY	9	Unmodified	_TFYLVGCYY_					0	0	0			REV__ENSG00000070501|ENST00000265421|POLB	REV__ENSG00000070501|ENST00000265421|POLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.7853393554688	2	564.757161	1127.49977	-0.33539	-0.00018941	-0.46664	-0.00026354	-0.80203	-0.00045295	564.7567082341496	64.6	1.041	64.397	64.105	65.146	-0.20254					60	25	3	0	0	0	0.024517	1	7464	7464		19.36	0	1	1323900	+		78150	20428	54573	54665	86195	86195					-0.05888110414298353
TFYMPVDNLG	10	Unmodified	_TFYMPVDNLG_					0	0	0		ENSG00000106304|ENST00000682466|SPAM1;nc|ENSG00000106304|P38567-2|SPAM1	ENSG00000106304|ENST00000682466|SPAM1	ENSG00000106304|ENST00000682466|SPAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.7721557617188	2	578.7708	1155.52705	-0.95293	-0.00055153	3.6543	0.002115	2.7014	0.0015635	578.7728477413988	86.137	1.1102	86.161	85.902	87.012	0.023666					47	25	4	0	0	0	0.98754	1	10753	10753		47.657	6.8792	1	551230			78151	2775	54574	54666	86196	86196					-0.04449626873952184
TFYQNILPL	9	Unmodified	_TFYQNILPL_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8309936523438	2	554.8055	1107.59645	0.041851	2.3219E-05	-4.0444	-0.0022438	-4.0025	-0.0022206	555.3061188007865	101.8	0.4602	101.63	101.43	101.89	-0.17178					13	10	2	0	0	0	0.024506	1	12619	12619		30.504	0	1	104790	+		78152	28147	54575	54667	86197	86197					0.04695200137143729
TFYWRKNNN	9	Unmodified	_TFYWRKNNN_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	620.8316040039062	2	621.804354	1241.59415	0.61523	0.00038255	-1.6208	-0.0010079	-1.0056	-0.0006253	621.8032709562965	61.74	0.50525	61.513	61.298	61.803	-0.22663					18	12	2	0	0	0	0.024313	1	7150	7150		27.882	18.699	1	299450	+		78153	23043	54576	54668	86198	86198					-0.01697835547952309
TGAIKPRAVK	10	Unmodified	_TGAIKPRAVK_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.8323364257812	2	520.832383	1039.65021	-1.5014	-0.00078199	1.1304	0.00058877	-0.37099	-0.00019322	520.8328670441073	20.861	0.82493	20.861	20.468	21.293	0					43	16	4	0	0	0	1.0719	1	593	593		36.447	0.82846	1	424590			78154	18822	54577	54669	86199	86199					0.13197417359515384
TGALETATI	9	Unmodified	_TGALETATI_					0	0	0			REV__ENSG00000042980|ENST00000265769|ADAM28	REV__ENSG00000042980|ENST00000265769|ADAM28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.7534484863281	2	438.737283	875.460012	-0.20446	-8.9705E-05	1.3081	0.00057393	1.1037	0.00048422	438.73783598975734	49.49	1.1749	49.389	49.068	50.243	-0.1008					63	30	4	0	0	0	0.02435	1	4996	4996		34.173	1.3601	1	1228000	+		78155	20105	54578	54670	86200	86200					0.01730085906626755
TGALRKAH	8	Unmodified	_TGALRKAH_					0	0	0			REV__ENST00000239906.9_1_5:137682722-137682833:+|nuORF	REV__ENST00000239906.9_1_5:137682722-137682833:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.72222900390625	2	427.253769	852.492984	-0.62122	-0.00026542	0.23708	0.00010129	-0.38414	-0.00016412	427.25379192598996	32.601	1.0223	32.613	32.338	33.36	0.011799					39	27	2	0	0	0	0.027866	1	2296	2296		18.324	0	1	445550	+		78156	29446	54579	54671	86201	86201					0.0608375753998871
TGAMGRPPL	9	Unmodified	_TGAMGRPPL_					0	0	0			REV__ENST00000527257.1_1_11:124972023-124972236:-|nuORF	REV__ENST00000527257.1_1_11:124972023-124972236:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2607116699219	2	450.242012	898.469472	-0.11635	-5.2386E-05	1.1248	0.00050642	1.0084	0.00045404	450.2420040416061	31.108	0.78379	30.867	30.585	31.369	-0.24109					59	19	6	0	0	0	0.024427	1	2078	2078		26.693	0	1	1122300	+		78157	34473	54580	54672	86202	86202					0.016175757111454914
TGARSRGKV	9	Unmodified	_TGARSRGKV_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.78472900390625	2	466.275232	930.535912	0.28871	0.00013462	1.9194	0.00089498	2.2081	0.0010296	466.27591069628596	46.922	1.0662	46.769	46.41	47.476	-0.15301					46	28	2	0	0	0	0.024477	1	4598	4598		20.947	0.95016	1	357580	+		78158	27626	54581	54673	86203	86203					0.06786527597421355
TGASIGVKLW	10	Unmodified	_TGASIGVKLW_					0	0	0			REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	REV__ENST00000369936.2_1_1:109730792-109745631:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.27978515625	2	516.297842	1030.58113	-0.85322	-0.00044052	4.3014	0.0022208	3.4482	0.0017803	516.3003675107498	55.319	0.23989	55.173	54.948	55.188	-0.14609					12	6	2	0	0	0	0.03519	1	5914	5914		82.75	0	1	241020	+		78159	22275	54582	54674	86204	86204					0.06706333339934645
TGCRTQLSSV	10	Carbamidomethyl (C)	_TGC(Carbamidomethyl (C))RTQLSSV_	TGC(1)RTQLSSV		TGC(75)RTQLSSV		0	1	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7740478515625	2	554.774405	1107.53426	-0.58012	-0.00032184	1.2102	0.0006714	0.6301	0.00034956	554.7750525630994	57.771	0.69841	57.593	57.096	57.795	-0.17775					52	17	4	0	0	0	0.61732	1	6307	6307		75.043	6.2565	1	5244400			78160	5797	54583	54675	86205	86205	74				-0.01520894273517115
TGFSFVFLP	9	Unmodified	_TGFSFVFLP_					0	0	0		ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2915954589844	2	507.768386	1013.52222	-0.49328	-0.00025047	-3.2921	-0.0016716	-3.7853	-0.0019221	507.76635262113786	21.481	0.47636	21.391	21.207	21.683	-0.090092					12	9	2	0	0	0	0.024381	1	656	656		55.504	16.483	1	25473			78161	16089	54584	54676	86206	86206					0.01599857045630415
TGGGGGGH	8	Unmodified	_TGGGGGGH_					0	0	0		ENST00000502486.5_2_4:42153705-42154329:-|nuORF	ENST00000502486.5_2_4:42153705-42154329:-|nuORF	ENST00000502486.5_2_4:42153705-42154329:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	598.2603149414062	1	599.253214	598.245937	-1.2194	-0.00073075	2.046	0.001226	0.82652	0.0004953	599.2541252173922	64.889	0.2373	64.687	64.5	64.738	-0.20254					6	5	2	0	0	0	0.027866	1	7393	7393		21.702	1.2205	1	84284			78162	15669	54585	54677	86207	86207					-0.06925576678759171
TGGGGGGS	8	Unmodified	_TGGGGGGS_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ENSG00000063169|ENST00000594866|BICRA	REV__ENSG00000157106|ENST00000446231|SMG1;REV__nc|ENSG00000109320|P19838|NFKB1;ENSG00000140836|ENST00000268489|ZFHX3;ENSG00000063169|ENST00000594866|BICRA	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.77880859375	1	549.22633	548.219054	0.25981	0.0001427	3.0381	0.0016686	3.2979	0.0018113	549.2294414400267	102.03	0.15479	101.9	101.83	101.99	-0.1293					5	3	2	0	0	0	0.027866	1	12670	12670		3.9852	0	1	17390			78163	25112;5446;21790;1258	54586	54678	86208	86208					-0.0731268528994633
TGGPLEEPE	9	Unmodified	_TGGPLEEPE_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2844543457031	2	464.716547	927.418542	1.9868	0.00092328	2.0905	0.00097147	4.0772	0.0018948	464.71766792119894	24.649	0.21625	24.468	24.374	24.59	-0.18089					7	4	2	0	0	0	0.024457	1	1066	1066		21.96	3.6355	1	19082	+		78164	23311	54587	54679	86209	86209					-0.048070948526969914
TGHELLSELQ	10	Unmodified	_TGHELLSELQ_					0	0	0		ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	ENSG00000187231|ENST00000428443|SESTD1	MSMS	OPSCC_40_ClassI_Rep-3	6	563.79248046875	2	563.790578	1125.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.371	1	74.189	73.689	74.689	-0.18279								0	0	0	0.20204	1	8759	8759		90.37	0	1				78165	9616	54588	54680	86210	86210					0.008842164011412024
TGHIILVPSTI	11	Unmodified	_TGHIILVPSTI_					0	0	0			REV__ENSG00000107362|ENST00000333421|ABHD17B	REV__ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.844482421875	2	575.845156	1149.67576	-0.31557	-0.00018172	-2.8133	-0.00162	-3.1289	-0.0018017	575.843249217509	102.67	0.43951	102.54	102.28	102.72	-0.12666					29	9	4	0	0	0	1.0238	1	12752	12752		31.53	1.0262	1	374640	+		78166	21665	54589	54681	86211	86211					0.10690847091291289
TGHPRKVT	8	Unmodified	_TGHPRKVT_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.2583923339844	2	448.259051	894.503549	0.20344	9.1196E-05	-0.26622	-0.00011933	-0.062773	-2.8139E-05	448.25894092668227	86.515	1.293	86.378	85.702	86.995	-0.13734					53	29	3	0	0	0	1.0574	1	10497	10497		21.96	0.25755	1	560680			78167	1060	54590	54682	86212	86212					0.05207740194430244
TGIKNLAGVT	10	Unmodified	_TGIKNLAGVT_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MSMS	OPSCC_40_ClassI_Rep-2	5	487.2863464355469	2	487.287474	972.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.002	1	41.77	41.27	42.27	-0.23186								0	0	0	0.18116	1	3737	3737		104.01	7.98	1		+		78168	27995	54591	54683	86213	86213					0.07301742960294177
TGITRVKRG	9	Unmodified	_TGITRVKRG_					0	0	0		PPP2R3A|p.P95T|1|0.17|ENSG00000073711|chr3:136001781-136001781|C/A|missense_variant	PPP2R3A|p.P95T|1|0.17|ENSG00000073711|chr3:136001781-136001781|C/A|missense_variant	PPP2R3A|p.P95T|1|0.17|ENSG00000073711|chr3:136001781-136001781|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2497863769531	2	494.306532	986.598512	0.25635	0.00012672	2.0523	0.0010145	2.3087	0.0011412	494.3074518533517	68.634	0.72736	68.404	68.116	68.844	-0.23048					37	17	3	0	0	0	0.024397	1	7956	7956		24.519	0	1	530190			78169	18987	54592	54684	86214	86214					0.10467673665618804
TGKIRVQSL	9	Unmodified	_TGKIRVQSL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.3085021972656	2	501.308741	1000.60293	-0.16864	-8.454E-05	-0.12883	-6.4583E-05	-0.29747	-0.00014912	501.30858671556905	33.087	0.68676	32.856	32.627	33.314	-0.23107					48	16	4	0	0	0	0.33914	1	2330	2330		70.399	13.678	1	1069700			78170	6301	54593	54685	86215	86215					0.10265138088516323
TGKIRVQSL	9	Unmodified	_TGKIRVQSL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.30859375	2	501.308741	1000.60293	-0.11483	-5.7563E-05	-0.093103	-4.6673E-05	-0.20793	-0.00010424	501.3084964248977	33.084	0.71439	32.884	32.69	33.404	-0.20019					38	17	4	0	0	0	0.31105	1	2329	2329		74.165	2.2875	1	1093100			78171	6301	54593	54685	86216	86216					0.10265138088516323
TGKIRVQSL	9	Unmodified	_TGKIRVQSL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.308741	1000.60293	-0.61971	-0.00031067	1.0808	0.0005418	0.46105	0.00023113	501.30923049807257	33.037	0.30532	33.037	32.79	33.096	0	0.12257	0.0010343	NaN	74.165	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470580			78172	6301	54593	54685							0.10265138088516323
TGKIRVQSL	9	Unmodified	_TGKIRVQSL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.308741	1000.60293	-0.91502	-0.00045871	0.10975	5.5016E-05	-0.80528	-0.00040369	501.30857406550723	33.046	1.0462	32.881	32.355	33.401	-0.16565	-0.033628	6.0709E-05	NaN	74.165	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1131300			78173	6301	54593	54685							0.10265138088516323
TGKKTRIL	8	Unmodified	_TGKKTRIL_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.78778076171875	2	458.800552	915.58655	-0.32866	-0.00015079	-2.073	-0.00095111	-2.4017	-0.0011019	458.799593212361	92.204	0.23306	92.204	92.139	92.372	0					12	5	3	0	0	0	0.027866	1	11715	11715		23.042	10.083	1	270080	+		78174	22242	54594	54686	86217	86217					0.12538056922414853
TGKKVYKAND	10	Unmodified	_TGKKVYKAND_					0	0	0			REV__ENSG00000100934|ENST00000307712|SEC23A	REV__ENSG00000100934|ENST00000307712|SEC23A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.845458984375	2	562.308938	1122.60332	-0.35706	-0.00020078	3.4898	0.0019624	3.1328	0.0017616	562.3110367586343	95.091	0.73153	95.091	94.745	95.476	0					35	16	3	0	0	0	0.03519	1	12148	12148		22.58	9.1256	1	401910	+		78175	21165	54595	54687	86218	86218					0.04692513017721467
TGLLFVNVIN	10	Unmodified	_TGLLFVNVIN_					0	0	0		ENST00000319074.5_1_14:23567332-23567638:+|nuORF	ENST00000319074.5_1_14:23567332-23567638:+|nuORF	ENST00000319074.5_1_14:23567332-23567638:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.316162109375	2	545.318774	1088.623	-0.76659	-0.00041804	-3.168	-0.0017276	-3.9346	-0.0021456	545.3168602991549	101.36	0.64894	101.37	101.05	101.69	0.0090256					41	14	4	0	0	0	1.0816	1	12933	12933		35.152	4.6484	1	1388600			78176	12177	54596	54688	86219	86219					0.08222889028479585
TGLLPFVP	8	Unmodified	_TGLLPFVP_					0	0	0		nc|ENSG00000153982|Q8N9F7-3|GDPD1;nc|ENSG00000153982|Q8N9F7-2|GDPD1;ENSG00000153982|ENST00000284116|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.59271240234375	2	422.252372	842.49019	0.31023	0.000131	-3.8348	-0.0016193	-3.5246	-0.0014883	422.2502677683635	50.093	0.28782	50.174	50.022	50.31	0.08099					12	8	2	0	0	0	0.027866	1	5167	5167		37.028	0	1	87148			78177	6372	54597	54689	86220	86220					0.06264489362467884
TGLQKVQSL	9	Unmodified	_TGLQKVQSL_					0	0	0		ENST00000524852.1_1_11:6340395-6340857:-|nuORF;ENST00000532354.1_1_11:6340395-6341123:-|nuORF;ENSG00000170955|ENST00000303927|CAVIN3	ENST00000524852.1_1_11:6340395-6340857:-|nuORF	ENST00000524852.1_1_11:6340395-6340857:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7773742675781	2	487.287474	972.560395	-0.25587	-0.00012468	-2.8042	-0.0013665	-3.0601	-0.0014911	487.28525374545274	41.746	1.0734	41.623	41.307	42.38	-0.12299					74	28	3	0	0	0	0.02293	1	3697	3697		112.11	5.4242	1	7207300			78178	8098	54598	54690	86221	86221					0.07301742960294177
TGLRGGPKP	9	Unmodified	_TGLRGGPKP_					0	0	0			REV__ENST00000491370.1_1_2:220436262-220436478:-|nuORF	REV__ENST00000491370.1_1_2:220436262-220436478:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78753662109375	2	441.761426	881.5083	-0.151	-6.6704E-05	0.29865	0.00013193	0.14765	6.5227E-05	441.76155661130383	41.438	0.46744	41.208	41.041	41.508	-0.23029					18	11	2	0	0	0	0.024457	1	3621	3621		29.15	3.6994	1	246020	+		78179	33725	54599	54691	86222	86222					0.06280624337182417
TGLVKLLEFN	10	Unmodified	_TGLVKLLEFN_					0	0	0			REV__RPS6KA5|p.R441Qfs*16|1|0.06|ENSG00000100784|chr14:90900165-90900165|C/-|frameshift_variant	REV__RPS6KA5|p.R441Qfs*16|1|0.06|ENSG00000100784|chr14:90900165-90900165|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3303833007812	2	567.331882	1132.64921	-0.57331	-0.00032526	-2.9862	-0.0016942	-3.5595	-0.0020194	567.3300680875744	89.08	1.7534	88.917	88.222	89.976	-0.1626					139	41	5	0	0	0	1.0236	1	10971	10971		42.864	7.246	1	5699600	+		78180	21150	54600	54692	86223	86223					0.08819158199980848
TGLYISEAGL	10	Unmodified	_TGLYISEAGL_					0	0	0			REV__ENST00000309859.8_1_16:23478376-23478613:-|nuORF	REV__ENST00000309859.8_1_16:23478376-23478613:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7718505859375	2	512.27149	1022.52843	-0.70803	-0.0003627	0.58298	0.00029865	-0.12505	-6.4059E-05	512.2712607905927	104.7	1.035	104.57	104.16	105.19	-0.12927					66	32	3	0	0	0	1.1307	1	13072	13072		26.693	1.1189	1	187370	+		78181	30169	54601	54693	86224	86224					0.01806330486465413
TGPAPPAAGLT	11	Unmodified	_TGPAPPAAGLT_					0	0	0		ENST00000412368.6_1_16:732250-732358:-|nuORF	ENST00000412368.6_1_16:732250-732358:-|nuORF	ENST00000412368.6_1_16:732250-732358:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.75811767578125	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	1.0344	1	13250	13250		29.17	0	1	5421500			78182	13818	54602	54694	86225	86225					0.024854810348415413
TGPKRPQP	8	Unmodified	_TGPKRPQP_					0	0	0			REV__ENSG00000060069|ENST00000613122|CTDP1	REV__ENSG00000060069|ENST00000613122|CTDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.2198486328125	2	440.753601	879.49265	-0.31256	-0.00013776	0.96268	0.0004243	0.65012	0.00028654	440.75365708125884	26.032	0.50859	26.009	25.735	26.243	-0.023087					15	11	2	0	0	0	0.027866	1	1303	1303		30.504	1.3541	1	66411	+		78183	20248	54603	54695	86226	86226					0.048083378201340565
TGPLETVCHPW	11	Unmodified	_TGPLETVCHPW_					0	0	0			REV__ENST00000255784.5_1_22:42222143-42222275:+|nuORF	REV__ENST00000255784.5_1_22:42222143-42222275:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.9264831542969	3	413.865741	1238.57539	0.17207	7.1216E-05	4.3177	0.001787	4.4898	0.0018582	413.8668637420528	31.424	0.37452	31.436	31.17	31.545	0.011799					18	8	3	0	0	0	0.024792	1	2050	2050		30.569	12.038	1	46674	+		78184	29544	54604	54696	86227	86227					-0.03435133234052046
TGQQTYCV	8	Unmodified	_TGQQTYCV_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.27471923828125	2	450.20001	898.385467	-0.36148	-0.00016274	2.5797	0.0011614	2.2182	0.00099863	450.20152024728634	92.227	0.55283	92.227	91.985	92.537	0					20	13	3	0	0	0	0.027866	1	11726	11726		60.972	18.576	1	109110	+		78185	24738	54605	54697	86228	86228					-0.06779000176413774
TGQTVRCASDD	11	Unmodified	_TGQTVRCASDD_					0	0	0			REV__nc|ENSG00000171992|Q8N3V7|SYNPO	REV__nc|ENSG00000171992|Q8N3V7|SYNPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	575.8141479492188	2	576.751127	1151.4877	-0.60033	-0.00034624	0.76063	0.00043869	0.16029	9.245E-05	576.7513797231118	47.797	0.6587	47.521	47.231	47.89	-0.27598					51	17	4	0	0	0	0.02475	1	4678	4678		42.864	21.917	1	1610100	+		78186	36936	54606	54698	86229	86229					-0.08198378895463065
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8563842773438	2	597.856921	1193.69929	-2.5283	-0.0015116	1.9886	0.0011889	-0.53969	-0.00032266	598.3599525204835	90.759	2.4584	90.759	89.27	91.729	0					148	58	3	0	0	0	0.96599	1	11464	11464		44.377	6.5657	1	2275200			78187	14997	54607	54699	86230	86230					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8565673828125	2	597.856921	1193.69929	-1.0361	-0.00061944	-0.20101	-0.00012018	-1.2371	-0.00073961	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	0.93459	3	11849	11634;11800;11849		49.536	7.1399	1	4942300			78188	14997	54607	54699	86231;86232;86233	86233					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8565063476562	2	597.856921	1193.69929	-0.69485	-0.00041542	-0.48603	-0.00029058	-1.1809	-0.000706	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.97926	1	11810	11810		41.427	2.1738	1	4386000			78189	14997	54607	54699	86234	86234					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8564453125	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	0.97926	1	11549	11549		41.427	3.6151	1	5655800			78190	14997	54607	54699	86235	86235					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8569946289062	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.303	1	91.154	90.654	91.654	-0.1487								0	0	0	1.0397	1	11189	11189		41.427	7.2541	1				78191	14997	54607	54699	86236	86236					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	597.856921	1193.69929	-0.56215	-0.00033608	-0.78641	-0.00047016	-1.3486	-0.00080624	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	0.99129	1	11506	11506		38.754	0.94209	1	5880700			78192	14997	54607	54699	86237	86237					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8563842773438	2	597.856921	1193.69929	0.028254	1.6892E-05	-0.51885	-0.0003102	-0.4906	-0.00029331	598.3585788626698	90.988	1.6784	90.848	90.115	91.794	-0.13942					112	39	3	0	0	0	1.0017	1	11096	11096		36.447	3.6343	1	2547700			78193	14997	54607	54699	86238	86238					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8562622070312	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	0.96599	1	11602	11602		44.377	1.5129	1	5598500			78194	14997	54607	54699	86239	86239					0.11018705648439209
TGRQRLFQV	9	Unmodified	_TGRQRLFQV_					0	0	0			REV__ENST00000220597.4_1_8:81888598-81888739:-|nuORF	REV__ENST00000220597.4_1_8:81888598-81888739:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.8084716796875	2	552.817264	1103.61998	1.0822	0.00059826	1.48	0.00081818	2.5622	0.0014164	552.817814087605	98.671	0.66826	98.547	98.285	98.953	-0.12413					34	15	3	0	0	0	0.53979	1	12227	12227		56.721	0.28726	1	93959	+		78195	29343	54608	54700	86240	86240					0.07231058694333115
TGSFQSPDVGY	11	Unmodified	_TGSFQSPDVGY_					0	0	0			REV__ENSG00000196850|ENST00000354300|PPTC7	REV__ENSG00000196850|ENST00000354300|PPTC7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.26171875	2	579.259111	1156.50367	-0.089371	-5.1769E-05	2.8006	0.0016223	2.7112	0.0015705	579.2610469048324	75.329	1.8214	75.056	74.641	76.462	-0.27266					58	44	2	0	0	0	0.94988	1	8939	8939		47.96	1.9873	1	9797000	+		78196	28229	54609	54701	86241	86241					-0.06832349386900205
TGSLAALVTL	10	Unmodified	_TGSLAALVTL_					0	0	0		ENST00000573209.1_1_17:7350776-7358776:+|nuORF	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.2844543457031	2	473.2844	944.554247	-0.14105	-6.6756E-05	-0.33103	-0.00015667	-0.47208	-0.00022343	473.2841040334205	83.358	0.51415	83.22	82.91	83.424	-0.13861					30	11	4	0	0	0	0.98754	1	10040	10040		47.657	8.4045	1	663340			78197	17068	54610	54702	86242	86242					0.079752247287729
TGTLASRTTDL	11	Unmodified	_TGTLASRTTDL_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3132934570312	2	568.30131	1134.58807	-0.23617	-0.00013421	3.9202	0.0022279	3.6841	0.0020937	568.3035072389932	67.245	0.70354	67.021	66.778	67.481	-0.22374					40	16	3	0	0	0	0.024731	1	7801	7801		28.081	0	1	880920	+		78198	26177	54611	54703	86243	86243					0.026156014298749142
TGTLLLKH	8	Unmodified	_TGTLLLKH_					0	0	0			REV__nc|ENSG00000170004|Q12873-2|CHD3;REV__ENSG00000111642|ENST00000544040|CHD4	REV__nc|ENSG00000170004|Q12873-2|CHD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.787841796875	2	441.774003	881.533452	0.26485	0.000117	-0.88489	-0.00039092	-0.62004	-0.00027392	441.7732885164089	40.606	0.32035	40.606	40.551	40.871	0					16	8	2	0	0	0	0.027866	1	3589	3589		38.806	3.6054	1	335600	+		78199	26426;21930	54612	54704	86244	86244					0.08794679139759864
TGVARLKR	8	Unmodified	_TGVARLKR_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MSMS	OPSCC_40_ClassI_Rep-1	4	450.7908935546875	2	450.790518	899.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.126	1	19.958	19.458	20.458	-0.16774								0	0	0	0.44619	1	510	510		60.972	3.1607	1		+		78200	27166	54613	54705	86245	86245					0.11268305982457605
TGVIVRPR	8	Unmodified	_TGVIVRPR_					0	0	0			REV__ENST00000580843.6_2_17:27043073-27045143:-|nuORF	REV__ENST00000580843.6_2_17:27043073-27045143:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.2848205566406	2	449.285069	896.555585	-0.3147	-0.00014139	0.45957	0.00020648	0.14488	6.5091E-05	449.2851429393923	34.763	1.1975	34.557	34.242	35.44	-0.20696					64	29	4	0	0	0	0.81662	2	2590	2581;2590		57.811	0	1	2549500	+		78201	35524	54614	54706	86246;86247	86247					0.10316903608179473
TGVLLPEL	8	Unmodified	_TGVLLPEL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;HERC2|p.R2554Tfs*3|1|0.44|ENSG00000128731|chr15:28201512-28201513|-/T|frameshift_variant;HERC2|p.A2915Qfs*12|1|0.06|ENSG00000128731|chr15:28186659-28186659|C/-|frameshift_variant	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	421.2538146972656	2	421.255111	840.49567	-0.21887	-9.2201E-05	-2.7471	-0.0011572	-2.9659	-0.0012494	421.2538142289097	83.538	1.0303	83.447	83.087	84.117	-0.090446					60	23	4	0	0	0	1.0338	1	10411	10411		31.955	3.7006	1	895370			78202	4311	54615	54707	86248	86248					0.06904168154278523
TGYGMPRQIL	10	Unmodified	_TGYGMPRQIL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.300537109375	2	568.300059	1134.58556	-0.11309	-6.427E-05	0.48704	0.00027678	0.37394	0.00021251	568.30038842348	58.131	0.407	57.953	57.826	58.233	-0.17775					17	9	2	0	0	0	0.72729	1	6387	6387		65.465	0	1	867350			78203	6694	54616	54708	86249	86249					0.02365474491216446
TGYGMPRQIL	10	Unmodified	_TGYGMPRQIL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	568.300059	1134.58556	0.078371	4.4538E-05	-2.4811	-0.00141	-2.4027	-0.0013655	568.2986102482968	58.07	0.76089	57.88	57.295	58.056	-0.19017	-0.058346	-0.0027888	NaN	65.465	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1170700			78204	6694	54616	54708							0.02365474491216446
TGYGMPRQIL	10	Unmodified	_TGYGMPRQIL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	568.300059	1134.58556	0.20881	0.00011867	0.068696	3.904E-05	0.27751	0.00015771	568.3002856638848	58.215	0.85119	57.981	57.74	58.591	-0.23363	0.043075	0.00010923	NaN	65.465	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678170			78205	6694	54616	54708							0.02365474491216446
TGYIVIGVM	9	Unmodified	_TGYIVIGVM_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7799072265625	2	476.762246	951.50994	0.54228	0.00025854	4.1748	0.0019904	4.7171	0.0022489	476.76397795370957	34.189	0.65854	34.189	33.894	34.552	0					19	16	2	0	0	0	0.024541	1	2499	2499		24.203	0	1	62928			78206	7063	54617	54709	86250	86250					0.03224497310941388
TGYLKGYTL	9	Unmodified	_TGYLKGYTL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.277099609375	2	508.276575	1014.5386	-0.7501	-0.00038126	0.86864	0.00044151	0.11854	6.0249E-05	508.2768802640919	55.289	1.2666	55.142	54.837	56.104	-0.14609					75	34	3	0	0	0	0.056725	4	5923	5923;5936;5948;5960		126.24	16.123	1	5719900			78207	10967	54618	54710	86251;86252;86253;86254	86251					0.03190938211707817
TGYLKGYTL	9	Unmodified	_TGYLKGYTL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2773132324219	2	508.276575	1014.5386	-0.30479	-0.00015492	0.352	0.00017891	0.047209	2.3995E-05	508.2766538931545	55.371	0.9382	55.141	54.855	55.794	-0.23087					60	26	3	0	0	0	0.071379	2	5917	5917;5952		120.87	16.265	1	7001600			78208	10967	54618	54710	86255;86256	86255					0.03190938211707817
TGYLKGYTL	9	Unmodified	_TGYLKGYTL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2767639160156	2	508.276575	1014.5386	-0.40088	-0.00020376	0.41823	0.00021258	0.017347	8.8169E-06	508.2766776503019	55.335	0.92322	55.129	54.866	55.79	-0.20613					60	25	3	0	0	0	0.071379	3	5909	5909;5933;5947		120.87	13.861	1	6902900			78209	10967	54618	54710	86257;86258;86259	86257					0.03190938211707817
THAEAPGQALL	11	Unmodified	_THAEAPGQALL_					0	0	0			REV__ENST00000422506.5_1_22:23981019-24037474:-|nuORF	REV__ENST00000422506.5_1_22:23981019-24037474:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.8308715820312	2	554.293288	1106.57202	0.18732	0.00010383	3.6073	0.0019995	3.7946	0.0021033	554.2950615763019	90.104	0.82079	90.118	89.674	90.494	0.013443					59	19	4	0	0	0	0.024765	1	11304	11304		49.536	10.283	1	844390	+		78210	32203	54619	54711	86260	86260					0.0229993998361806
THAGASPLRN	10	Unmodified	_THAGASPLRN_					0	0	0			REV__ENSG00000147488|ENST00000689386|ST18	REV__ENSG00000147488|ENST00000689386|ST18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2703857421875	2	512.270147	1022.52574	-0.15004	-7.6862E-05	2.1681	0.0011107	2.0181	0.0010338	512.270910752159	104.19	1.4432	104.18	103.73	105.17	-0.0032196					89	40	3	0	0	0	1.0002	1	13344	13344		45.972	7.1661	1	318570	+		78211	24560	54620	54712	86261	86261					0.015379198721802823
THALLKMIY	9	Unmodified	_THALLKMIY_					0	0	0		nc|ENSG00000076716|O75487-2|GPC4;ENSG00000076716|ENST00000370828|GPC4	nc|ENSG00000076716|O75487-2|GPC4	nc|ENSG00000076716|O75487-2|GPC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3273315429688	2	545.309895	1088.60524	-0.50123	-0.00027333	4.1981	0.0022893	3.6969	0.0020159	545.3119979653842	23.398	0.54005	23.218	23.067	23.607	-0.17989					17	12	3	0	0	0	0.024506	1	949	949		23.042	7.4007	1	99957			78212	1590	54621	54713	86262	86262					0.06447850501990615
THALLKMIY	9	Unmodified	_THALLKMIY_					0	0	0		nc|ENSG00000076716|O75487-2|GPC4;ENSG00000076716|ENST00000370828|GPC4	nc|ENSG00000076716|O75487-2|GPC4	nc|ENSG00000076716|O75487-2|GPC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.309895	1088.60524	-0.010652	-5.8084E-06	3.7	0.0020177	3.6894	0.0020118	545.3112972287726	23.377	0.47083	23.175	22.967	23.438	-0.20193	-0.014161	0.00090596	NaN	16.473	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85972			78213	1590	54621	54713							0.06447850501990615
THALLKMIY	9	Unmodified	_THALLKMIY_					0	0	0		nc|ENSG00000076716|O75487-2|GPC4;ENSG00000076716|ENST00000370828|GPC4	nc|ENSG00000076716|O75487-2|GPC4	nc|ENSG00000076716|O75487-2|GPC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.309895	1088.60524	1.2134	0.00066168	1.5872	0.00086552	2.8006	0.0015272	545.3106170686101	23.366	0.37214	23.175	22.988	23.36	-0.19117	-0.014673	-0.0013983	NaN	16.473	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90600			78214	1590	54621	54713							0.06447850501990615
THAPILLGFFT	11	Unmodified	_THAPILLGFFT_					0	0	0			REV__ENSG00000172139|ENST00000305815|SLC9C1	REV__ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.8364868164062	2	608.839874	1215.66519	-0.99217	-0.00060407	-3.7189	-0.0022642	-4.7111	-0.0028683	608.8374589612363	109.83	0.74304	109.7	109.51	110.25	-0.12524					78	33	4	0	0	0	1.0483	1	13509	13509		25.574	1.0549	1	5435400	+		78215	26636	54622	54714	86263	86263					0.06598864436841723
THAPILLGFFT	11	Unmodified	_THAPILLGFFT_					0	0	0			REV__ENSG00000172139|ENST00000305815|SLC9C1	REV__ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.83642578125	2	608.839874	1215.66519	-1.5508	-0.00094421	-3.5804	-0.0021799	-5.1312	-0.0031241	608.8375823790956	109.85	0.61025	109.72	109.5	110.11	-0.13983					81	26	5	0	0	0	1.0442	1	13490	13490		26.693	4.1133	1	5424900	+		78216	26636	54622	54714	86264	86264					0.06598864436841723
THAPQPLL	8	Unmodified	_THAPQPLL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2664794921875	2	438.750527	875.486502	0.15364	6.7408E-05	-0.10338	-4.536E-05	0.050252	2.2048E-05	438.750413045131	42.869	0.68914	42.73	42.521	43.21	-0.13929					25	18	2	0	0	0	0.027866	1	4019	4019		18.324	0	1	406080			78217	5591	54623	54715	86265	86265					0.04377819588614784
THAQGPPL	8	Unmodified	_THAQGPPL_					0	0	0		ENST00000371370.7_1_1:54411767-54412118:+|nuORF	ENST00000371370.7_1_1:54411767-54412118:+|nuORF	ENST00000371370.7_1_1:54411767-54412118:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.7186279296875	2	410.719227	819.423902	1.0893	0.0004474	-2.1056	-0.00086482	-1.0163	-0.00041743	410.7182657977767	95.455	1.742	95.459	94.878	96.62	0.0041122					98	40	4	0	0	0	1.0239	1	12065	12065		33.516	6.7195	1	2791300			78218	12993	54624	54716	86266	86266					0.00696673520440072
THAQGPPL	8	Unmodified	_THAQGPPL_					0	0	0		ENST00000371370.7_1_1:54411767-54412118:+|nuORF	ENST00000371370.7_1_1:54411767-54412118:+|nuORF	ENST00000371370.7_1_1:54411767-54412118:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.71875	2	410.719227	819.423902	0.44315	0.00018201	-1.4011	-0.00057547	-0.95797	-0.00039345	410.7185615601089	96.027	1.7726	95.89	95.331	97.104	-0.1367					105	40	4	0	0	0	1.0574	1	11841	11841		20.482	1.1219	1	2186500			78219	12993	54624	54716	86267	86267					0.00696673520440072
THARIHAR	8	Unmodified	_THARIHAR_					0	0	0			REV__ENSG00000136378|ENST00000388820|ADAMTS7	REV__ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.80120849609375	2	481.275567	960.53658	-0.49575	-0.00023859	-2.691	-0.0012951	-3.1868	-0.0015337	481.2765500059891	94.545	0.2944	94.549	94.323	94.618	0.0042953					9	6	3	0	0	0	0.027866	1	11959	11959		18.324	0	1	46206	+		78220	23651	54625	54717	86268	86268					0.05473367037131993
THAVEDKAIIV	11	Unmodified	_THAVEDKAIIV_					0	0	0			REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF	REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	597.8568725585938	2	598.337695	1194.66084	-2.5037	-0.0014981	-3.22	-0.0019267	-5.7237	-0.0034247	598.3355288250426	91.251	0.63009	91.251	91.011	91.641	0					33	14	3	0	0	0	0.024756	1	11535	11535		44.377	16.296	1	319250	+		78221	34704	54626	54718	86269	86269					0.0712935522326461
THAVSSPARR	10	Unmodified	_THAVSSPARR_					0	0	0			REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.2960205078125	2	541.296696	1080.57884	2.6666	0.0014434	-2.996	-0.0016218	-0.32944	-0.00017833	541.2949420049443	18.854	0.78699	18.917	18.649	19.436	0.063307					27	15	2	0	0	0	1.089	1	313	313		34.173	2.2177	1	294280	+		78222	27652	54627	54719	86270	86270					0.04177297654837275
THAVSSPARR	10	Unmodified	_THAVSSPARR_					0	0	0			REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	541.296696	1080.57884	2.6666	0.0014434	-2.996	-0.0016218	-0.32944	-0.00017833	541.2949420049443	18.854	0.78699	18.917	18.649	19.436	0.063307	0.027512	-0.00016896	NaN	34.173	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294280	+		78223	27652	54627	54719							0.04177297654837275
THAVSSPARR	10	Unmodified	_THAVSSPARR_					0	0	0			REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.296696	1080.57884	0.26031	0.0001409	-0.037413	-2.0252E-05	0.22289	0.00012065	541.2956049815914	19.066	0.19675	18.862	18.757	18.954	-0.20371	-0.027512	0.003034	NaN	34.173	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10397	+		78224	27652	54627	54719							0.04177297654837275
THCEFAYLRDL	11	Unmodified	_THCEFAYLRDL_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;ENST00000586456.1_1_17:75486911-75493449:+|nuORF;ENST00000589246.1_1_17:75493182-75494737:+|nuORF	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.2876892089844	3	456.551933	1366.63397	-1.1645	-0.00053166	3.7183	0.0016976	2.5537	0.0011659	456.55372809926035	28.97	0.5648	28.725	28.578	29.142	-0.24524					19	12	2	0	0	0	0.02477	1	1760	1760		12.433	0	1	71015			78225	9359	54628	54720	86271	86271					-0.03468076659578401
THCTTGQI	8	Unmodified	_THCTTGQI_					0	0	0			REV__nc|ENSG00000151376|Q16798-2|ME3	REV__nc|ENSG00000151376|Q16798-2|ME3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.69866943359375	2	430.700177	859.385802	0.37146	0.00015999	-4.1915	-0.0018053	-3.82	-0.0016453	430.6982899602663	32.636	0.86105	32.699	32.39	33.251	0.062885					62	22	4	0	0	0	0.78609	1	2228	2228		60.294	0	1	2369200	+		78226	36784	54629	54721	86272	86272					-0.049515804565544386
THDEAAPL	8	Unmodified	_THDEAAPL_					0	0	0		ANKRD30A|p.P281H|1|0.24|ENSG00000148513|chr10:37141739-37141739|C/A|missense_variant	ANKRD30A|p.P281H|1|0.24|ENSG00000148513|chr10:37141739-37141739|C/A|missense_variant	ANKRD30A|p.P281H|1|0.24|ENSG00000148513|chr10:37141739-37141739|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2664489746094	2	427.20615	852.397747	-0.00017035	-7.2775E-08	-0.4325	-0.00018477	-0.43267	-0.00018484	427.20559443814807	42.895	0.47212	42.755	42.484	42.956	-0.13929					17	12	2	0	0	0	0.027866	1	3937	3937		8.8223	0	1	112360			78227	94	54630	54722	86273	86273					-0.03435640441728083
THDIDISAL	9	Unmodified	_THDIDISAL_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3;REV__ENSG00000125414|ENST00000245503|MYH2;REV__ENSG00000133020|ENST00000403437|MYH8	REV__ENSG00000125414|ENST00000245503|MYH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2852783203125	2	492.753464	983.492375	-0.4251	-0.00020947	-1.5647	-0.00077099	-1.9898	-0.00098046	492.7525502553475	93.351	0.33768	93.346	93.2	93.538	-0.0042038					12	7	2	0	0	0	0.024436	1	11801	11801		38.806	21.338	1	48307	+		78228	21776;22814;23337	54631	54723	86274	86274					-3.126690376120678E-05
THDKKKII	8	Unmodified	_THDKKKII_					0	0	0			REV__TBX20|p.H232R|1|0.24|ENSG00000164532|chr7:35240997-35240997|T/C|missense_variant	REV__TBX20|p.H232R|1|0.24|ENSG00000164532|chr7:35240997-35240997|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.27215576171875	2	491.805834	981.597115	-0.022777	-1.1202E-05	-0.2797	-0.00013756	-0.30248	-0.00014876	491.80530718479173	30.979	0.33186	30.826	30.597	30.928	-0.15231					11	7	2	0	0	0	0.027866	1	2005	2005		7.1934	0	1	87880	+		78229	25768	54632	54724	86275	86275					0.10558039576847023
THDLLKSEVFN	11	Unmodified	_THDLLKSEVFN_					0	0	0			REV__ENSG00000085840|ENST00000371568|ORC1	REV__ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7377624511719	3	434.894465	1301.66157	-0.39729	-0.00017278	-3.2845	-0.0014284	-3.6818	-0.0016012	434.8925801581156	40.808	0.37603	40.672	40.454	40.83	-0.13553					12	9	2	0	0	0	0.024747	1	3581	3581		33.039	8.7635	1	58998	+		78230	20760	54633	54725	86276	86276					0.022801498723310942
THDMEGKEL	9	Unmodified	_THDMEGKEL_					0	0	0		nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF	nc|ENSG00000110619|P49589|CARS1	nc|ENSG00000110619|P49589|CARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2391967773438	2	530.242406	1058.47026	-0.090946	-4.8223E-05	-2.6678	-0.0014146	-2.7587	-0.0014628	530.2409838189699	107.43	1.1014	107.43	106.37	107.47	0.0018311					68	32	3	0	0	0	0.33603	1	13666	13666		70.816	28.42	1	407140			78231	3050	54634	54726	86277	86277					-0.05663674430456922
THDMEGKEL	9	Unmodified	_THDMEGKEL_					0	0	0		nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF	nc|ENSG00000110619|P49589|CARS1	nc|ENSG00000110619|P49589|CARS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.242406	1058.47026	-1.6626	-0.0008816	-0.44284	-0.00023481	-2.1055	-0.0011164	530.2421636941425	107.32	0.34098	107.18	106.97	107.31	-0.1346	-0.12542	0.0022986	NaN	70.816	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35524			78232	3050	54634	54726							-0.05663674430456922
THDPLRQP	8	Unmodified	_THDPLRQP_					0	0	0			REV__ENST00000344119.6_1_9:140330651-140331360:-|nuORF	REV__ENST00000344119.6_1_9:140330651-140331360:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2540283203125	2	482.253966	962.493378	-0.064952	-3.1323E-05	1.3474	0.00064978	1.2824	0.00061845	482.254554327035	30.848	1.3171	30.607	30.248	31.565	-0.24109					52	32	2	0	0	0	0.99042	1	1986	1986		38.806	1.7777	1	2619200	+		78233	30677	54635	54727	86278	86278					0.010631324691871669
THDSAAPSGT	10	Unmodified	_THDSAAPSGT_					0	0	0			REV__ENST00000445649.1_1_2:96068499-96071323:+|nuORF	REV__ENST00000445649.1_1_2:96068499-96071323:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2877502441406	2	472.209421	942.404288	0.4702	0.00022203	-0.73465	-0.00034691	-0.26445	-0.00012487	472.2073087127583	94.401	0.32368	94.279	94.016	94.34	-0.12215					15	7	3	0	0	0	0.03519	1	11625	11625		49.442	15.269	1	37323	+		78234	32618	54636	54728	86279	86279					-0.06921747280989621
THDSLNRLL	9	Unmodified	_THDSLNRLL_					0	0	0			REV__FLT1|p.A673T|1|0.25|ENSG00000102755|chr13:28384984-28384984|C/T|missense_variant	REV__FLT1|p.A673T|1|0.25|ENSG00000102755|chr13:28384984-28384984|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.8131713867188	2	534.793455	1067.57236	-0.68516	-0.00036642	1.0424	0.00055749	0.35727	0.00019107	534.7940452339043	103.6	0.55586	103.6	103.43	103.98	0					19	13	2	0	0	0	0.024541	1	13336	13336		24.203	11.244	1	58662	+		78235	21323	54637	54729	86280	86280					0.041273597034887644
THDSSIRYL	9	Unmodified	_THDSSIRYL_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.763916015625	2	546.277638	1090.54072	-0.15551	-8.4949E-05	2.8634	0.0015642	2.7078	0.0014792	546.2794964656591	17.475	0.26951	17.333	17.183	17.453	-0.14278					10	5	2	0	0	0	0.024541	1	171	171		20.947	0.4651	1	20222			78236	8169	54638	54730	86281	86281					-0.0009263305046260939
THDTVPIGLA	10	Unmodified	_THDTVPIGLA_					0	0	0			REV__ENSG00000087253|ENST00000262134|LPCAT2	REV__ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.279052734375	2	512.277106	1022.53966	2.6467	0.0013559	1.6406	0.00084042	4.2873	0.0021963	512.2778545831779	19.151	0.83446	19.217	18.995	19.829	0.066195					43	16	4	0	0	0	1.0665	1	367	367		37.159	1.5408	1	1108400	+		78237	20793	54639	54731	86282	86282					0.029291525806002028
THEDVFSAKI	10	Unmodified	_THEDVFSAKI_					0	0	0			REV__ENST00000484672.5_1_22:19898593-19905733:-|nuORF	REV__ENST00000484672.5_1_22:19898593-19905733:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.7745361328125	2	573.793121	1145.57169	-0.35743	-0.00020509	2.8367	0.0016277	2.4793	0.0014226	573.7949692762804	34.56	0.65134	34.353	34.12	34.771	-0.20696					18	15	2	0	0	0	0.03519	1	2538	2538		24.519	0	1	63738	+		78238	27674	54640	54732	86283	86283					0.0047252026377009315
THEMYLNVM	9	Unmodified	_THEMYLNVM_					0	0	0		PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.7700805664062	2	569.257002	1136.49945	0.13383	7.6181E-05	-0.12675	-7.2153E-05	0.0070764	4.0283E-06	569.2557698974637	72.819	0.3815	72.554	72.343	72.724	-0.26479					11	8	2	0	0	0	0.024457	1	8522	8522		15.642	1.8665	1	49691			78239	1630	54641	54733	86284	86284					-0.06333853405817536
THEMYLNVM	9	Unmodified	_THEMYLNVM_					0	0	0		PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant;ENSG00000078142|ENST00000262039|PIK3C3	PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	PIK3C3|p.Y803Lfs*14|1|0.09|ENSG00000078142|chr18:42058025-42058026|-/CTCTTCA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.76953125	2	569.257002	1136.49945	-0.4468	-0.00025434	1.6643	0.00094743	1.2175	0.00069308	569.7603878525982	72.544	0.20656	72.346	72.248	72.454	-0.19811					6	4	2	0	0	0	0.024323	1	8491	8491		35.618	2.8059	1	87696			78240	1630	54641	54733	86285	86285					-0.06333853405817536
THERERLYPFS	11	Unmodified	_THERERLYPFS_					0	0	0		ENSG00000006194|ENST00000219069|ZNF263	ENSG00000006194|ENST00000219069|ZNF263	ENSG00000006194|ENST00000219069|ZNF263	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.28240966796875	3	478.908997	1433.70516	0.37885	0.00018143	-1.0143	-0.00048576	-0.63546	-0.00030433	478.9084266859683	20.236	0.57803	20.068	19.767	20.345	-0.16774					26	11	3	0	0	0	0.024856	1	547	547		9.2118	0.41249	1	68905			78241	786	54642	54734	86286	86286					0.005657593694877505
THERRPTN	8	Unmodified	_THERRPTN_					0	0	0		ENST00000557188.1_1_14:36840618-36841095:+|nuORF;ENSG00000187569|ENST00000345088|DPPA3	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7608642578125	2	505.759946	1009.50534	-1.3614	-0.00068854	2.1601	0.0010925	0.79872	0.00040396	505.76118893845205	107.31	0.6497	107.18	106.68	107.33	-0.1346					54	26	3	0	0	0	0.99042	3	13318	13311;13318;13325		38.806	5.6333	1	261540			78242	9639	54643	54735	86287;86288;86289	86288					0.0009674921238911338
THFASIEYDL	10	Unmodified	_THFASIEYDL_					0	0	0			REV__nc|ENSG00000140945|P55290-5|CDH13	REV__nc|ENSG00000140945|P55290-5|CDH13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.8560791015625	2	598.285128	1194.5557	-0.25138	-0.0001504	3.9492	0.0023628	3.6979	0.0022124	598.2872908980564	94.024	0.79877	93.902	93.668	94.467	-0.12215					39	18	3	0	0	0	0.03519	1	11556	11556		58.782	9.2459	1	299090	+		78243	24050	54644	54736	86290	86290					-0.03379185973130916
THFLLRPR	8	Unmodified	_THFLLRPR_					0	0	0		ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	519.7897338867188	2	520.311618	1038.60868	0.023114	1.2027E-05	-1.8375	-0.00095606	-1.8144	-0.00094403	520.3105533765275	52.622	0.68654	52.432	52.106	52.793	-0.18982					22	16	2	0	0	0	0.027866	1	5467	5467		24.203	0	1	143180			78244	12071	54645	54737	86291	86291					0.09092281390849166
THFLLRPR	8	Unmodified	_THFLLRPR_					0	0	0		ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.311618	1038.60868	-0.72042	-0.00037484	-1.471	-0.0007654	-2.1914	-0.0011402	520.3108190320561	52.523	0.51279	52.4	52.081	52.594	-0.12396	-0.031604	0.0005403	NaN	24.203	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227230			78245	12071	54645	54737							0.09092281390849166
THFLLRPR	8	Unmodified	_THFLLRPR_					0	0	0		ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	ENST00000310924.6_1_17:77914006-77914372:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.311618	1038.60868	0.18429	9.5889E-05	-2.5822	-0.0013435	-2.3979	-0.0012476	520.3102584437595	52.72	0.51073	52.462	52.173	52.683	-0.25838	0.03098	-0.00061597	NaN	24.203	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200490			78246	12071	54645	54737							0.09092281390849166
THFLPTWYF	9	Unmodified	_THFLPTWYF_					0	0	0		nc|ENSG00000160781|Q6TCH4-4|PAQR6;nc|ENSG00000160781|Q6TCH4-5|PAQR6;ENSG00000160781|ENST00000292291|PAQR6	nc|ENSG00000160781|Q6TCH4-4|PAQR6	nc|ENSG00000160781|Q6TCH4-4|PAQR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	605.3051147460938	2	606.297842	1210.58113	-0.83226	-0.0005046	3.1354	0.001901	2.3031	0.0013964	606.3007865648605	61.801	0.5613	61.587	61.252	61.813	-0.21375					35	13	4	0	0	0	0.024541	1	6890	6890		7.6903	0	1	335240			78247	6838	54646	54738	86292	86292					-0.015736666600560056
THFMDGMNELA	11	Unmodified	_THFMDGMNELA_					0	0	0		ENST00000581505.6_2_17:61784845-61790870:-|nuORF;nc|ENSG00000266173|Q7RTN6-4|STRADA;nc|ENSG00000266173|Q7RTN6-6|STRADA;nc|ENSG00000266173|Q7RTN6-2|STRADA;nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA	ENST00000581505.6_2_17:61784845-61790870:-|nuORF	ENST00000581505.6_2_17:61784845-61790870:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5134582519531	3	422.514491	1264.52164	-0.41338	-0.00017466	-3.7162	-0.0015702	-4.1296	-0.0017448	422.5134879358354	31.908	1.7161	31.92	31.545	33.261	0.011797					158	44	6	0	0	0	1.0621	1	2149	2149		21.78	1.4654	1	32737000			78248	10975	54647	54739	86293	86293					-0.10003673728033391
THFPNARAVRR	11	Unmodified	_THFPNARAVRR_					0	0	0			REV__ENST00000478899.1_1_1:156707192-156707995:-|nuORF	REV__ENST00000478899.1_1_1:156707192-156707995:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.25897216796875	3	442.249688	1323.72723	0.019438	8.5963E-06	-1.2268	-0.00054256	-1.2074	-0.00053397	442.2505005204665	23.791	0.57218	23.867	23.518	24.091	0.076239					30	12	4	0	0	0	0.02477	1	887	887		28.577	16.144	1	125860	+		78249	33380	54648	54740	86294	86294					0.07832028628536136
THFPRLAL	8	Unmodified	_THFPRLAL_					0	0	0			REV__ENSG00000173868|ENST00000310544|PHOSPHO1	REV__ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.26922607421875	2	477.779619	953.544686	0.85783	0.00040986	-2.5447	-0.0012158	-1.6868	-0.00080593	477.7780022167498	100.86	0.68716	100.73	100.63	101.31	-0.13364					24	16	2	0	0	0	0.027866	1	12574	12574		8.8223	2.0868	1	96163	+		78250	26816	54649	54741	86295	86295					0.06605501233900668
THFPRLAL	8	Unmodified	_THFPRLAL_					0	0	0			REV__ENSG00000173868|ENST00000310544|PHOSPHO1	REV__ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.779619	953.544686	0.76733	0.00036662	-2.6128	-0.0012483	-1.8454	-0.00088171	477.77833402665624	100.84	0.58429	100.84	100.62	101.2	0	0.05377	-0.00056398	NaN	12.959	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101940	+		78251	26816	54649	54741							0.06605501233900668
THFPRLAL	8	Unmodified	_THFPRLAL_					0	0	0			REV__ENSG00000173868|ENST00000310544|PHOSPHO1	REV__ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	477.779619	953.544686	0.19654	9.3904E-05	-1.751	-0.0008366	-1.5545	-0.00074269	477.77881040721746	100.82	0.59885	100.83	100.65	101.25	0.0090256	0.046539	0.00025948	NaN	12.959	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87629	+		78252	26816	54649	54741							0.06605501233900668
THFPRLAL	8	Unmodified	_THFPRLAL_					0	0	0			REV__ENSG00000173868|ENST00000310544|PHOSPHO1	REV__ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	477.779619	953.544686	0.40166	0.0001919	-2.0622	-0.00098527	-1.6605	-0.00079337	477.7787002717165	100.88	0.46075	100.87	100.69	101.15	-0.0054474	0.085021	-3.787E-05	NaN	12.959	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173980	+		78253	26816	54649	54741							0.06605501233900668
THFSVVVL	8	Unmodified	_THFSVVVL_					0	0	0			REV__ENST00000296417.5_1_4:100869650-100870027:-|nuORF	REV__ENST00000296417.5_1_4:100869650-100870027:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.24688720703125	2	451.260728	900.506903	0.4203	0.00018967	-4.4695	-0.0020169	-4.0491	-0.0018272	451.2586249072895	23.968	0.35514	23.753	23.467	23.822	-0.2151					15	7	3	0	0	0	0.027866	1	1008	1008		37.028	21.387	1	66315	+		78254	29993	54650	54742	86296	86296					0.05266990248446746
THGCILHPELT	11	Unmodified	_THGCILHPELT_					0	0	0		ENSG00000124194|ENST00000342560|GDAP1L1;nc|ENSG00000124194|Q96MZ0-4|GDAP1L1;nc|ENSG00000104381|Q8TB36-2|GDAP1;ENSG00000104381|ENST00000220822|GDAP1	ENSG00000124194|ENST00000342560|GDAP1L1	ENSG00000124194|ENST00000342560|GDAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.87518310546875	3	407.541257	1219.60194	1.5416	0.00062827	3.4148	0.0013917	4.9564	0.00202	407.5426382416523	19.935	0.44172	19.735	19.455	19.897	-0.2001					26	8	5	0	0	0	0.02476	1	473	473		32.034	0	1	118050			78255	4020	54651	54743	86297	86297					0.0009255565728381043
THGGKRLS	8	Unmodified	_THGGKRLS_					0	0	0			REV__nc|ENSG00000174886|Q86Y39-2|NDUFA11	REV__nc|ENSG00000174886|Q86Y39-2|NDUFA11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.2615966796875	2	428.243401	854.472249	-0.46766	-0.00020027	1.0826	0.00046362	0.61493	0.00026334	428.2438300796657	89.947	0.12814	89.785	89.688	89.816	-0.1626					4	2	2	0	0	0	0.027866	1	10987	10987		25.574	14.708	1	27079	+		78256	36955	54652	54744	86298	86298					0.039191671603248324
THGLAVLGL	9	Unmodified	_THGLAVLGL_					0	0	0			REV__nc|ENSG00000130751|Q99742-2|NPAS1	REV__nc|ENSG00000130751|Q99742-2|NPAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.8537292480469	2	440.766178	879.517802	-0.17928	-7.9023E-05	0.55931	0.00024652	0.38002	0.0001675	440.7663205697026	31.676	0.53809	31.491	31.283	31.821	-0.18503					20	12	2	0	0	0	0.024258	1	2128	2128		19.36	6.4008	1	123010	+		78257	23149	54653	54745	86299	86299					0.07322392622711504
THGLAVLGL	9	Unmodified	_THGLAVLGL_					0	0	0			REV__nc|ENSG00000130751|Q99742-2|NPAS1	REV__nc|ENSG00000130751|Q99742-2|NPAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.85369873046875	2	440.766178	879.517802	-0.038872	-1.7133E-05	0.63788	0.00028116	0.59901	0.00026402	440.7662883906598	31.769	0.49246	31.611	31.412	31.904	-0.15772					16	11	2	0	0	0	0.024443	1	2107	2107		19.36	15.375	1	113870	+		78258	23149	54653	54745	86300	86300					0.07322392622711504
THGLLPGR	8	Unmodified	_THGLLPGR_					0	0	0			REV__nc|ENSG00000115808|O43815-2|STRN	REV__nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.7486572265625	2	425.748319	849.482085	-0.66646	-0.00028374	0.80329	0.000342	0.13683	5.8256E-05	425.74862788882973	26.178	2.1616	26.014	25.674	27.835	-0.16331					138	55	4	0	0	0	1.0338	1	1289	1289		31.955	0	1	14509000	+		78259	36586	54654	54746	86301	86301					0.05132355165721947
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.87890625	3	406.878143	1217.6126	0.386	0.00015705	0.40274	0.00016387	0.78874	0.00032092	406.8778364532396	20.056	1.7952	19.888	19.423	21.219	-0.16774					91	36	6	0	0	0	1.0545	1	503	503		38.754	4.6671	1	2785500	+		78260	32522	54655	54747	86302	86302					0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	609.81494140625	2	609.813576	1217.6126	0.043729	2.6667E-05	2.5803	0.0015735	2.624	0.0016002	609.8149958042245	20.199	0.68507	19.975	19.779	20.464	-0.22344					34	13	4	0	0	0	1.0275	1	493	493		54.776	30.257	1	279840	+		78261	32522	54655	54747	86303	86303					0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.87890625	3	406.878143	1217.6126	0.39572	0.00016101	-2.6983	-0.0010979	-2.3026	-0.00093687	406.8777942579985	20.161	1.8703	19.938	19.434	21.304	-0.22344					56	37	4	0	0	0	0.99657	1	515	515		46.457	5.3767	1	2563800	+		78262	32522	54655	54747	86304	86304					0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	609.813576	1217.6126	-0.54256	-0.00033086	3.1261	0.0019064	2.5836	0.0015755	609.8153967386187	19.616	0.51504	19.616	19.414	19.929	0	-0.23491	0.00069686	NaN	54.776	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162040	+		78263	32522	54655	54747							0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	609.813576	1217.6126	-0.47617	-0.00029037	3.1948	0.0019482	2.7187	0.0016579	609.8154020158834	19.913	0.62048	19.807	19.556	20.176	-0.10627	-0.044075	0.00078063	NaN	54.776	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144860	+		78264	32522	54655	54747							0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	609.813576	1217.6126	0.98721	0.00060201	1.5643	0.00095393	2.5515	0.0015559	609.8144155516654	19.785	0.72624	19.851	19.637	20.363	0.066195	0.00060326	-0.001208	NaN	54.776	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138960	+		78265	32522	54655	54747							0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	609.813576	1217.6126	-1.0576	-0.00064495	3.5804	0.0021834	2.5228	0.0015384	609.8156668235588	20.054	0.5773	19.887	19.669	20.246	-0.16774	0.035954	0.0012509	NaN	54.776	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371490	+		78266	32522	54655	54747							0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	609.813576	1217.6126	0.78979	0.00048162	1.783	0.0010873	2.5727	0.0015689	609.8145473438497	20.164	0.62992	19.968	19.706	20.336	-0.1959	0.11758	-0.00094133	NaN	54.776	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324880	+		78267	32522	54655	54747							0.012497191466081858
THGPDRSRRH	10	Unmodified	_THGPDRSRRH_					0	0	0			REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	609.813576	1217.6126	0.043729	2.6667E-05	2.5803	0.0015735	2.624	0.0016002	609.8149958042245	20.199	0.68507	19.975	19.779	20.464	-0.22344	0.12485	3.1153E-05	NaN	54.776	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279840	+		78268	32522	54655	54747							0.012497191466081858
THGRLLRAGGL	11	Unmodified	_THGRLLRAGGL_					0	0	0		ENST00000341871.7_2_17:10632372-10633145:-|nuORF	ENST00000341871.7_2_17:10632372-10633145:-|nuORF	ENST00000341871.7_2_17:10632372-10633145:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8429565429688	2	575.843813	1149.67307	-0.82546	-0.00047534	-0.57584	-0.00033159	-1.4013	-0.00080693	575.8433114529906	88.92	2.4021	88.92	87.573	89.975	0					191	57	4	0	0	0	0.95882	1	11189	11189		45.972	3.108	1	1520800			78269	12502	54656	54748	86305	86305					0.10422436476983421
THGSFPQP	8	Unmodified	_THGSFPQP_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7718505859375	2	435.70886	869.403166	-0.061116	-2.6629E-05	4.3547	0.0018974	4.2936	0.0018708	435.71061399021806	26.408	3.2659	26.408	25.009	28.274	0					149	81	3	0	0	0	0.027866	1	1223	1223		17.365	10.172	1	568570	+		78270	25411	54657	54749	86306	86306					-0.03675916859242534
THGTEPRGQV	10	Unmodified	_THGTEPRGQV_					0	0	0			REV__ENSG00000101842|ENST00000217957|VSIG1	REV__ENSG00000101842|ENST00000217957|VSIG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.7597045898438	2	541.272887	1080.53122	-0.74475	-0.00040311	0.35953	0.00019461	-0.38522	-0.00020851	541.7758803432048	41.003	0.27309	40.867	40.674	40.947	-0.13553					10	6	2	0	0	0	0.03519	1	3582	3582		15.642	0	1	91044	+		78271	21257	54658	54750	86307	86307					-0.005824013360097524
THGTRVLVG	9	Unmodified	_THGTRVLVG_					0	0	0			REV__nc|ENSG00000160446|Q96GR4-3|ZDHHC12	REV__nc|ENSG00000160446|Q96GR4-3|ZDHHC12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.2723083496094	2	470.272158	938.529764	-0.28847	-0.00013566	0.3685	0.0001733	0.080029	3.7635E-05	470.2722458645397	91.332	2.0416	91.209	90.754	92.796	-0.12341					118	48	4	0	0	0	0.89441	1	11205	11205		32.812	3.6629	1	5650700	+		78272	36835	54659	54751	86308	86308					0.05804009365908769
THGVVYEFT	9	Unmodified	_THGVVYEFT_					0	0	0			REV__ENSG00000171295|ENST00000304060|ZNF440	REV__ENSG00000171295|ENST00000304060|ZNF440	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2926025390625	2	526.756007	1051.49746	-0.17342	-9.1351E-05	-3.837	-0.0020212	-4.0105	-0.0021125	526.7540893286895	52.72	0.5525	52.462	52.21	52.763	-0.25838					19	13	2	0	0	0	0.024457	1	5464	5464		29.15	0	1	462920	+		78273	26557	54660	54752	86309	86309					-0.026228228277659582
THHARRRR	8	Unmodified	_THHARRRR_					0	0	0		nc|ENSG00000288675|I0J062|PANO1	nc|ENSG00000288675|I0J062|PANO1	nc|ENSG00000288675|I0J062|PANO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3165283203125	2	545.316089	1088.61762	-0.40471	-0.0002207	1.3497	0.00073602	0.94501	0.00051533	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	1.043	1	10919	10919		30.504	0.18592	1	3438300			78274	18821	54661	54753	86310	86310					0.07686067799886587
THHNFVPSMLL	11	Unmodified	_THHNFVPSMLL_					0	0	0			REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF	REV__ENST00000564508.2_1_16:72461754-72462081:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	432.7205810546875	3	432.557019	1294.64923	-0.35514	-0.00015362	3.0185	0.0013057	2.6634	0.0011521	432.5583723987857	30.774	0.5414	30.596	30.41	30.952	-0.17818					18	12	2	0	0	0	0.024734	1	1991	1991		16.53	0	1	159490	+		78275	35250	54662	54754	86311	86311					0.013688349283256684
THHPLPVL	8	Unmodified	_THHPLPVL_					0	0	0		nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26446533203125	2	457.266345	912.518136	-0.37978	-0.00017366	-3.9561	-0.001809	-4.3359	-0.0019826	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.0133	1	9946	9946		35.201	1.6851	1	2920900			78276	847	54663	54755	86312	86312					0.05837812342565485
THHQFPKTR	9	Unmodified	_THHQFPKTR_					0	0	0			REV__nc|ENSG00000141076|Q969X6-3|UTP4	REV__nc|ENSG00000141076|Q969X6-3|UTP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8430786132812	2	576.307064	1150.59957	-0.1735	-9.9991E-05	4.1668	0.0024014	3.9933	0.0023014	576.3099785431326	92.763	0.49786	92.62	92.289	92.787	-0.14282					17	11	2	0	0	0	0.024367	1	11361	11361		52.937	11.51	1	63328	+		78277	36722	54664	54756	86313	86313					0.030298880345071666
THHTMKPVI	9	Unmodified	_THHTMKPVI_					0	0	0		ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	ENSG00000183273|ENST00000327554|CCDC60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8168334960938	2	532.289494	1062.56443	0.24011	0.00012781	-3.4648	-0.0018443	-3.2247	-0.0017165	532.2876049163687	88.396	0.46892	88.368	88.05	88.519	-0.027657					18	10	2	0	0	0	0.024397	1	11080	11080		47.657	13.485	1	515650			78278	9211	54665	54757	86314	86314					0.03565509182340065
THICQHKL	8	Unmodified	_THICQHKL_					0	0	0			REV__GLI4|p.R203C|1|0.24|ENSG00000250571|chr8:143276280-143276280|C/T|missense_variant	REV__GLI4|p.R203C|1|0.24|ENSG00000250571|chr8:143276280-143276280|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2581787109375	2	490.260736	978.50692	-0.11017	-5.4014E-05	-1.6977	-0.00083232	-1.8079	-0.00088634	490.26074189152354	102.25	3.064	102.25	100.58	103.64	0.0073471					108	72	4	0	0	0	1.0009	1	13065	13065		37.159	1.9584	1	519180	+		78279	36073	54666	54758	86315	86315					0.016806669767674975
THICQHKL	8	Unmodified	_THICQHKL_					0	0	0			REV__GLI4|p.R203C|1|0.24|ENSG00000250571|chr8:143276280-143276280|C/T|missense_variant	REV__GLI4|p.R203C|1|0.24|ENSG00000250571|chr8:143276280-143276280|C/T|missense_variant	MSMS	OPSCC_39_ClassI_Rep-3	3	490.2593688964844	2	490.260736	978.50692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.21	1	102.2	101.7	102.7	-0.0054474								0	0	0	0.73703	1	13015	13015		38.806	3.6054	1		+		78280	36073	54666	54758	86316	86316					0.016806669767674975
THICQHKL	8	Unmodified	_THICQHKL_					0	0	0			REV__GLI4|p.R203C|1|0.24|ENSG00000250571|chr8:143276280-143276280|C/T|missense_variant	REV__GLI4|p.R203C|1|0.24|ENSG00000250571|chr8:143276280-143276280|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.2589416503906	2	490.260736	978.50692	0.27285	0.00013377	-0.26463	-0.00012974	0.0082246	4.0322E-06	490.26218095532454	98.363	1.8607	98.226	97.927	99.787	-0.13625					85	45	3	0	0	0	1.043	1	12179	12179		30.504	2.2494	1	161930	+		78281	36073	54666	54758	86317	86317					0.016806669767674975
THIDSCLVT	9	Unmodified	_THIDSCLVT_					0	0	0		nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.74029541015625	2	494.742042	987.469531	-0.062591	-3.0966E-05	-3.4433	-0.0017035	-3.5059	-0.0017345	494.74021502667273	53.635	1.7588	53.39	52.975	54.733	-0.2453					117	51	4	0	0	0	0.59099	1	5604	5604		53.351	3.9099	1	6426300			78282	18224	54667	54759	86318	86318					-0.02470469079491977
THIDSCLVT	9	Unmodified	_THIDSCLVT_					0	0	0		nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.739990234375	2	494.742042	987.469531	-0.25034	-0.00012385	-3.3624	-0.0016635	-3.6127	-0.0017874	494.7402494508613	53.547	1.4293	53.35	52.897	54.327	-0.19739					102	40	4	0	0	0	0.50848	1	5596	5596		58.782	8.7574	1	5583700			78283	18224	54667	54759	86319	86319					-0.02470469079491977
THIFKGKL	8	Unmodified	_THIFKGKL_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2876281738281	2	472.28982	942.565087	-0.32971	-0.00015572	-4.4572	-0.0021051	-4.7869	-0.0022608	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	0.99042	2	11576	11576;11622		38.806	5.2619	1	42351000	+		78284	24762	54668	54760	86320;86321	86320					0.09150671893701201
THIKLHRE	8	Unmodified	_THIKLHRE_					0	0	0			REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64	REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.3134155273438	2	517.298707	1032.58286	0.43659	0.00022585	2.3745	0.0012283	2.8111	0.0014542	517.2995188785665	97.25	0.97733	97.25	96.749	97.726	-3.8147E-05					33	21	2	0	0	0	0.027866	1	12391	12391		31.955	0	1	169200	+		78285	19992	54669	54761	86322	86322					0.06787387148574453
THIKQHQSL	9	Unmodified	_THIKQHQSL_					0	0	0			REV__ENSG00000167637|ENST00000618787|ZNF283	REV__ENSG00000167637|ENST00000618787|ZNF283	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.840576171875	2	546.301447	1090.58834	-0.20543	-0.00011223	2.4772	0.0013533	2.2717	0.001241	546.3023200143579	99.684	0.20903	99.684	99.578	99.787	0					6	4	2	0	0	0	0.024209	1	12752	12752		56.721	0	1	34411	+		78286	26169	54670	54762	86323	86323					0.046670659403844184
THIKQHQSL	9	Unmodified	_THIKQHQSL_					0	0	0			REV__ENSG00000167637|ENST00000618787|ZNF283	REV__ENSG00000167637|ENST00000618787|ZNF283	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.8402709960938	2	546.301447	1090.58834	-0.43506	-0.00023768	-0.20282	-0.0001108	-0.63789	-0.00034848	546.3034897143364	99.708	0.20963	99.703	99.566	99.775	-0.0050812					6	4	2	0	0	0	0.024209	1	12663	12663		56.721	0	1	24569	+		78287	26169	54670	54762	86324	86324					0.046670659403844184
THILVHRRLH	10	Unmodified	_THILVHRRLH_					0	0	0			REV__nc|ENSG00000162702|Q9Y2X9-2|ZNF281	REV__nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.9257507324219	3	427.926545	1280.75781	-0.12631	-5.4053E-05	-1.8711	-0.00080071	-1.9975	-0.00085477	427.92569915479913	101.3	0.64894	101.31	101.05	101.69	0.0090332					40	14	4	0	0	0	1.1237	1	12945	12945		21.686	0	1	665290	+		78288	25477	54671	54763	86325	86325					0.12865807013599806
THIPKGWAR	9	Unmodified	_THIPKGWAR_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7817993164062	2	533.30125	1064.58795	-0.040601	-2.1653E-05	-1.724	-0.00091943	-1.7646	-0.00094109	533.2996946169835	59.562	0.32524	59.313	59.17	59.495	-0.24842					12	7	2	0	0	0	0.024466	1	6600	6600		24.519	2.8169	1	123040			78289	5869	54672	54764	86326	86326					0.05823691011164556
THIQFQHL	8	Unmodified	_THIQFQHL_					0	0	0			REV__ENST00000368931.7_1_1:151016167-151018626:+|nuORF	REV__ENST00000368931.7_1_1:151016167-151018626:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.2711791992188	2	512.272158	1022.52976	-0.23912	-0.0001225	-2.1173	-0.0010846	-2.3564	-0.0012071	512.2709205793889	106.49	1.4454	106.49	106.02	107.47	0.0018311					106	46	4	0	0	0	1.0009	2	13600	13579;13600		37.159	0	1	6463600	+		78290	31075	54673	54765	86327;86328	86328					0.019400093658987316
THIQFQHL	8	Unmodified	_THIQFQHL_					0	0	0			REV__ENST00000368931.7_1_1:151016167-151018626:+|nuORF	REV__ENST00000368931.7_1_1:151016167-151018626:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2718505859375	2	512.272158	1022.52976	0.13357	6.8426E-05	-1.7758	-0.00090972	-1.6423	-0.00084129	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	1.043	1	13008	13008		30.504	5.0535	1	236480	+		78291	31075	54673	54765	86329	86329					0.019400093658987316
THIQIHVNF	9	Unmodified	_THIQIHVNF_					0	0	0			REV__nc|ENSG00000171466|Q6V9R5-2|ZNF562	REV__nc|ENSG00000171466|Q6V9R5-2|ZNF562	MSMS	OPSCC_40_ClassI_Rep-2	5	554.7996826171875	2	554.79854	1107.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.417	1	98.293	97.793	98.793	-0.12413								0	0	0	0.5792	1	12199	12199		42.396	4.5846	1		+		78292	26567	54674	54766	86330	86330					0.03303967428678334
THIRKFREKR	10	Unmodified	_THIRKFREKR_					0	0	0			REV__ENST00000263657.6_1_2:68401970-68402120:+|nuORF	REV__ENST00000263657.6_1_2:68401970-68402120:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.6083679199219	3	457.609105	1369.80549	0.038465	1.7602E-05	-2.6396	-0.0012079	-2.6011	-0.0011903	457.60809604817155	99.112	1.8989	98.943	97.964	99.863	-0.16863					121	46	4	0	0	0	1.1277	1	12268	12268		25.126	1.7481	1	211670	+		78293	29692	54675	54767	86331	86331					0.1353746121376389
THIRKHNAL	9	Unmodified	_THIRKHNAL_					0	0	0			REV__ENSG00000197123|ENST00000421025|ZNF679	REV__ENSG00000197123|ENST00000421025|ZNF679	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3164672851562	2	545.317432	1088.62031	-0.95668	-0.0005217	-0.29702	-0.00016197	-1.2537	-0.00068367	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	0.85329	1	10921	10921		35.618	0	1	15621000	+		78294	28267	54676	54768	86332	86332					0.07954478414171717
THIRQHLV	8	Unmodified	_THIRQHLV_					0	0	0			REV__ENST00000599145.1_1_19:58928113-58929148:+|nuORF	REV__ENST00000599145.1_1_19:58928113-58929148:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.814453125	2	502.293425	1002.5723	0.88577	0.00044492	2.8266	0.0014198	3.7124	0.0018647	502.29508125340016	97.277	0.63057	97.141	96.746	97.377	-0.1367					18	13	2	0	0	0	0.027866	1	11986	11986		35.201	0	1	75705	+		78295	21604	54677	54769	86333	86333					0.07111404494139606
THIRRHAALY	10	Unmodified	_THIRRHAALY_					0	0	0			REV__nc|ENSG00000214022|Q9BWE0|REPIN1	REV__nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.218994140625	3	413.235267	1236.68397	-0.2052	-8.4796E-05	0.18511	7.6492E-05	-0.020093	-8.3033E-06	413.235445803677	40.72	0.47234	40.495	40.259	40.731	-0.225					26	12	3	0	0	0	0.03519	1	3553	3553		15.333	3.6972	1	284580	+		78296	28765	54678	54770	86334	86334					0.07509838851274253
THITKHKSL	9	Unmodified	_THITKHKSL_					0	0	0			REV__ENSG00000197472|ENST00000339986|ZNF695	REV__ENSG00000197472|ENST00000339986|ZNF695	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2694091796875	2	532.81419	1063.61383	-1.3102	-0.0006981	-4.1496	-0.002211	-5.4598	-0.0029091	532.8110659477247	83.603	0.98871	83.603	82.965	83.954	0					22	11	3	0	0	0	0.024418	1	10391	10391		37.812	0	1	90393	+		78297	28307	54679	54771	86335	86335					0.0845654046281652
THIVKHKML	9	Unmodified	_THIVKHKML_					0	0	0			REV__ENSG00000196350|ENST00000601693|ZNF729	REV__ENSG00000196350|ENST00000601693|ZNF729	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.829833984375	2	553.828786	1105.64302	0.21415	0.0001186	1.8625	0.0010315	2.0766	0.0011501	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	0.90698	1	11172	11172		31.955	0.42505	1	4967900	+		78298	28168	54680	54772	86336	86336					0.09442361487435846
THIVKHKML	9	Unmodified	_THIVKHKML_					0	0	0			REV__ENSG00000196350|ENST00000601693|ZNF729	REV__ENSG00000196350|ENST00000601693|ZNF729	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.83154296875	2	553.828786	1105.64302	-0.79306	-0.00043922	2.9265	0.0016208	2.1334	0.0011816	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	0.97516	1	10803	10803		25.45	3.4903	1	6583300	+		78299	28168	54680	54772	86337	86337					0.09442361487435846
THIVKQVTI	9	Unmodified	_THIVKQVTI_					0	0	0			REV__nc|ENSG00000110786|P54829-2|PTPN5	REV__nc|ENSG00000110786|P54829-2|PTPN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.30517578125	2	519.818941	1037.62333	-1.7649	-0.00091745	-0.00271	-1.4087E-06	-1.7676	-0.00091886	519.8193380884077	92.948	1.0642	92.804	92.285	93.35	-0.14356					38	24	2	0	0	0	0.024427	1	11493	11493		19.997	0	1	219540	+		78300	21875	54681	54773	86338	86338					0.10602308748320866
THIYTLID	8	Unmodified	_THIYTLID_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7908630371094	2	488.260925	974.507297	-0.90497	-0.00044186	0.88446	0.00043185	-0.020503	-1.0011E-05	488.2612519134256	84.171	0.93093	84.098	83.743	84.674	-0.072769					36	21	2	0	0	0	0.027866	1	10451	10451		40.573	2.7611	1	381370	+		78301	24538	54682	54774	86339	86339					0.019023651776365114
THIYTLID	8	Unmodified	_THIYTLID_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7906188964844	2	488.260925	974.507297	0.8098	0.0003954	-0.96205	-0.00046973	-0.15224	-7.4334E-05	488.2595164430405	84.627	0.29298	84.468	84.321	84.614	-0.15869					9	6	2	0	0	0	0.027866	1	10242	10242		40.573	13.88	1	40485	+		78302	24538	54682	54774	86340	86340					0.019023651776365114
THKEHRKKKS	10	Unmodified	_THKEHRKKKS_					0	0	0			REV__nc|ENSG00000175455|Q49A88-5|CCDC14	REV__nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.302734375	3	426.917827	1277.73165	0.5579	0.00023818	3.2201	0.0013747	3.778	0.0016129	427.253354246273	68.891	0.85709	68.649	68.266	69.123	-0.24277					45	20	3	0	0	0	0.03519	1	8045	8045		24.232	7.5144	1	237180	+		78303	26950	54683	54775	86341	86341					0.10389493051457066
THKFLAQI	8	Unmodified	_THKFLAQI_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4;GEMIN4|p.L582V|1|0.29|ENSG00000179409|chr17:746299-746299|G/C|missense_variant	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.27764892578125	2	479.279452	956.544351	0.21198	0.0001016	-4.0742	-0.0019527	-3.8622	-0.0018511	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.94517	1	10520	10520		45.952	0	1	4888300			78304	8896	54684	54776	86342	86342					0.0643408151404401
THKGILVRAVN	11	Unmodified	_THKGILVRAVN_					0	0	0			REV__ENST00000396403.8_1_19:53994954-53995710:+|nuORF	REV__ENST00000396403.8_1_19:53994954-53995710:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.3665161132812	2	604.367121	1206.71969	-0.44133	-0.00026673	-0.063761	-3.8535E-05	-0.5051	-0.00030526	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.03	1	13203	13203		20.837	0.84038	1	5077600	+		78305	31731	54685	54777	86343	86343					0.12459876308275852
THKGSKKQ	8	Unmodified	_THKGSKKQ_					0	0	0		ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2642822265625	2	457.264333	912.514114	-0.61065	-0.00027923	1.0535	0.00048173	0.44285	0.0002025	457.2646490789165	94.319	1.5384	94.181	93.616	95.155	-0.13779					79	35	4	0	0	0	1.0106	1	11626	11626		35.618	3.6634	1	1504400			78306	1167	54686	54778	86344	86344					0.05435722848858404
THKGYGSPK	9	Unmodified	_THKGYGSPK_					0	0	0			REV__ENSG00000277893|ENST00000622030|SRD5A2	REV__ENSG00000277893|ENST00000622030|SRD5A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79254150390625	2	487.756341	973.498129	-1.1537	-0.00056271	1.8708	0.00091252	0.71718	0.00034981	487.7569702698566	36.127	0.4854	36.084	35.864	36.349	-0.042454					20	13	2	0	0	0	0.024427	1	2803	2803		34.173	0	1	397140	+		78307	29209	54687	54779	86345	86345					0.010320166119640817
THKIRFPVS	9	Unmodified	_THKIRFPVS_					0	0	0		ENST00000354371.6_1_2:238006612-238006942:+|nuORF	ENST00000354371.6_1_2:238006612-238006942:+|nuORF	ENST00000354371.6_1_2:238006612-238006942:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2442016601562	2	542.816733	1083.61891	-1.1572	-0.00062816	-0.55354	-0.00030047	-1.7108	-0.00092863	542.8161831300768	66.98	0.43059	66.735	66.64	67.071	-0.24517					19	11	2	0	0	0	0.0245	1	7729	7729		29.17	0	1	1244700			78308	12622	54688	54780	86346	86346					0.08044844325399936
THKKKRKH	8	Unmodified	_THKKKRKH_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8348388671875	2	531.835791	1061.65703	-0.3549	-0.00018875	-1.0792	-0.00057398	-1.4341	-0.00076273	531.8350745345408	104.36	0.50235	104.36	104.15	104.65	0.0031357					24	12	3	0	0	0	1.0338	1	13353	13353		31.955	5.2619	1	196620			78309	2166	54689	54781	86347	86347					0.1286677503073861
THKMFDHVVL	10	Unmodified	_THKMFDHVVL_					0	0	0		nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.55023193359375	3	409.549864	1225.62776	0.6906	0.00028283	-0.67136	-0.00027495	0.019244	7.8814E-06	409.54958284219606	53.184	1.0153	53.184	52.711	53.726	0					106	27	5	0	0	0	1.037	1	5744	5744		41.08	0.3019	1	10019000			78310	9891;789	54690	54782	86348	86348					0.02397449899581261
THKMFDHVVL	10	Unmodified	_THKMFDHVVL_					0	0	0		nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.5496520996094	3	409.549864	1225.62776	0.43796	0.00017937	-0.40412	-0.00016551	0.033833	1.3856E-05	409.54962954510665	53.113	0.88559	52.986	52.552	53.437	-0.12705					67	22	4	0	0	0	1.0275	1	5563	5563		42.338	2.4649	1	4178500			78311	9891;789	54690	54782	86349	86349					0.02397449899581261
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2514953613281	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	0.95679	3	9863	9750;9863;9900		44.117	12.162	1	1610700	+		78312	25067	54691	54783	86350;86351;86352	86351					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2516174316406	2	435.251226	868.487899	-0.19644	-8.55E-05	0.10126	4.4072E-05	-0.095182	-4.1428E-05	435.251208127812	92.044	1.0634	92.036	91.665	92.729	-0.0082855					46	25	2	0	0	0	1.0574	1	11621	11621		24.203	3.7209	1	2000500	+		78313	25067	54691	54783	86353	86353					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.25140380859375	2	435.251226	868.487899	0.080324	3.4961E-05	0.26039	0.00011334	0.34072	0.0001483	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	0.96769	3	9841	9757;9815;9841		42.396	7.1954	1	1590300	+		78314	25067	54691	54783	86354;86355;86356	86356					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2518310546875	2	435.251226	868.487899	0.69119	0.00030084	-0.76176	-0.00033156	-0.070566	-3.0714E-05	435.2507821673248	92.023	3.6376	92.033	91.072	94.709	0.0094147					138	87	3	0	0	0	1.0106	2	11574	11574;11598		35.618	10.044	1	1840600	+		78315	25067	54691	54783	86357;86358	86357					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.251708984375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.0009	4	9514	9502;9514;9572;9671		37.159	8.7224	1	2257900	+		78316	25067	54691	54783	86359;86360;86361;86362	86360					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2514343261719	2	435.251226	868.487899	-1.5352	-0.00066818	1.42	0.00061805	-0.11518	-5.0134E-05	435.2517614216058	92.184	2.8053	92.041	90.979	93.784	-0.14356					107	65	3	0	0	0	1.0009	1	11324	11324		37.159	10.363	1	1777900	+		78317	25067	54691	54783	86363	86363					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.25146484375	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	0.89627	4	9622	9406;9455;9610;9622		51.335	16.495	1	2292300	+		78318	25067	54691	54783	86364;86365;86366;86367	86367					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2515563964844	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0516	1	9620	9620		29.15	3.6994	1	1872200	+		78319	25067	54691	54783	86368	86368					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2514953613281	2	435.251226	868.487899	0.55221	0.00024035	-0.69019	-0.00030041	-0.13798	-6.0055E-05	435.2508297970553	92.207	3.6429	92.065	90.861	94.504	-0.14131					128	85	3	0	0	0	1.043	1	11313	11313		30.504	7.4612	1	1192800	+		78320	25067	54691	54783	86369	86369					0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	435.251226	868.487899	-0.19644	-8.55E-05	0.10126	4.4072E-05	-0.095182	-4.1428E-05	435.251208127812	92.044	1.0634	92.036	91.665	92.729	-0.0082855	-0.0064603	3.4089E-05	NaN	37.159	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2000500	+		78321	25067	54691	54783							0.04839453677379879
THKRGLSA	8	Unmodified	_THKRGLSA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	435.251226	868.487899	0.69119	0.00030084	-0.76176	-0.00033156	-0.070566	-3.0714E-05	435.2507821673248	92.023	3.6376	92.033	91.072	94.709	0.0094147	-0.0097838	-0.00071717	NaN	37.159	138	87	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1840600	+		78322	25067	54691	54783							0.04839453677379879
THKRTLTT	8	Unmodified	_THKRTLTT_					0	0	0			REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF	REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27764892578125	2	479.277441	956.540328	0.2758	0.00013219	-0.36749	-0.00017613	-0.091689	-4.3944E-05	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.91956	2	10232	10220;10232		49.442	7.0454	1	7407200	+		78323	31296	54692	54784	86370;86371	86371					0.06031992020314192
THLAGKHLR	9	Unmodified	_THLAGKHLR_					0	0	0			REV__ENST00000526262.5_1_11:70189825-70228249:+|nuORF	REV__ENST00000526262.5_1_11:70189825-70228249:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.8184204101562	2	516.8067	1031.59885	0.70493	0.00036431	1.1053	0.00057122	1.8102	0.00093553	516.8069518861419	67.872	0.45739	67.617	67.323	67.78	-0.25517					14	10	2	0	0	0	0.024541	1	7785	7785		3.1592	0	1	279750	+		78324	23223	54693	54785	86372	86372					0.08431093385456734
THLAYAFQ	8	Unmodified	_THLAYAFQ_					0	0	0		ENST00000500447.1_1_11:566062-566293:-|nuORF	ENST00000500447.1_1_11:566062-566293:-|nuORF	ENST00000500447.1_1_11:566062-566293:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.267578125	2	475.74016	949.465767	-0.43154	-0.0002053	-1.466	-0.00069745	-1.8976	-0.00090275	475.73897475148266	31.849	0.16804	31.691	31.569	31.737	-0.15772					5	3	2	0	0	0	0.027866	1	2127	2127		24.203	6.8378	1	38935			78325	15645	54694	54786	86373	86373					-0.010987707910544486
THLERFDSDDN	11	Unmodified	_THLERFDSDDN_					0	0	0			REV__nc|ENSG00000125744|O75298-2|RTN2	REV__nc|ENSG00000125744|O75298-2|RTN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7605285644531	3	450.196984	1347.56912	-0.61386	-0.00027636	-3.8255	-0.0017222	-4.4394	-0.0019986	450.52800101558256	39.011	0.17097	38.788	38.652	38.823	-0.22311					6	4	2	0	0	0	0.024809	1	3249	3249		22.562	17.918	1	92301	+		78326	22839	54695	54787	86374	86374					-0.09075979931844813
THLFLHLM	8	Oxidation (M)	_THLFLHLM(Oxidation (M))_		THLFLHLM(1)		THLFLHLM(100)	0	0	1			REV__ENST00000551358.1_1_12:48457453-48459429:-|nuORF	REV__ENST00000551358.1_1_12:48457453-48459429:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2944946289062	2	514.273312	1026.53207	-0.1745	-8.9741E-05	-3.6472	-0.0018757	-3.8217	-0.0019654	514.2712390863958	70.475	0.30669	70.203	69.994	70.301	-0.27185					12	7	2	0	0	0	0.027866	1	8205	8205		100.27	25.756	1	843790	+		78327	34931	54696	54788	86375	86375		948			0.019867217793716918
THLFTVYLLSK	11	Unmodified	_THLFTVYLLSK_					0	0	0			REV__nc|ENSG00000127328|Q96QF0-3|RAB3IP	REV__nc|ENSG00000127328|Q96QF0-3|RAB3IP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7877502441406	3	441.255334	1320.74417	-0.35921	-0.0001585	-1.685	-0.00074349	-2.0442	-0.000902	441.2544873248059	43.114	0.59423	43.001	42.693	43.288	-0.11253					26	15	2	0	0	0	0.02473	1	3886	3886		21.032	6.789	1	255660	+		78328	36643	54697	54789	86376	86376					0.09663091671131951
THLGITGVILL	11	Unmodified	_THLGITGVILL_					0	0	0		ENST00000471410.5_1_X:38422267-38546918:+|nuORF	ENST00000471410.5_1_X:38422267-38546918:+|nuORF	ENST00000471410.5_1_X:38422267-38546918:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.8536376953125	2	568.855524	1135.69649	0.16699	9.4994E-05	-3.9808	-0.0022645	-3.8138	-0.0021695	568.8531476773758	101.29	1.5817	101.12	100.84	102.42	-0.17178					102	36	5	0	0	0	1.018	2	12545	12545;12580		32.812	4.9302	1	6685000			78329	14958	54698	54790	86377;86378	86377					0.1340743747095985
THLGVSLIFL	10	Unmodified	_THLGVSLIFL_					0	0	0		ENST00000564310.1_2_15:45895313-45908032:+|nuORF	ENST00000564310.1_2_15:45895313-45908032:+|nuORF	ENST00000564310.1_2_15:45895313-45908032:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.32568359375	2	550.329142	1098.64373	-0.26348	-0.000145	-4.1347	-0.0022755	-4.3982	-0.0024205	550.3279305908578	98.909	1.0484	98.919	98.397	99.446	0.010231					50	23	3	0	0	0	0.79525	1	12648	12648		60.972	13.056	1	216050			78330	16886	54699	54791	86379	86379					0.09835479408138781
THLHPARRA	9	Unmodified	_THLHPARRA_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8191528320312	2	529.801949	1057.58934	0.58021	0.0003074	-3.1441	-0.0016657	-2.5639	-0.0013583	529.8001133143682	19.828	0.29547	19.628	19.505	19.801	-0.2001					8	5	2	0	0	0	0.024487	1	471	471		11.511	0	1	34079	+		78331	27216	54700	54792	86380	86380					0.0628532509992965
THLHPPPD	8	Unmodified	_THLHPPPD_					0	0	0		ENST00000541676.5_2_16:84213003-84213276:-|nuORF	ENST00000541676.5_2_16:84213003-84213276:-|nuORF	ENST00000541676.5_2_16:84213003-84213276:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.24627685546875	2	457.229959	912.445365	0.0048165	2.2022E-06	-0.84472	-0.00038623	-0.8399	-0.00038403	457.2299543196409	41.934	0.47265	41.811	41.603	42.076	-0.12299					25	12	3	0	0	0	0.027866	1	3751	3751		16.473	0	1	313250			78332	16442	54701	54793	86381	86381					-0.014359414508589907
THLHSVAPDC	10	Unmodified	_THLHSVAPDC_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.289306640625	2	540.250566	1078.48658	-0.37537	-0.0002028	-0.40052	-0.00021638	-0.77589	-0.00041918	540.2504202392613	34.947	0.32569	34.731	34.508	34.833	-0.21555					11	7	2	0	0	0	0.03519	1	2586	2586		19.997	13.684	1	71501			78333	5446	54702	54794	86382	86382					-0.04952548473693241
THLIKPGTKML	11	Unmodified	_THLIKPGTKML_					0	0	0		ENSG00000127423|ENST00000374298|AUNIP;nc|ENSG00000127423|Q9H7T9-2|AUNIP	ENSG00000127423|ENST00000374298|AUNIP	ENSG00000127423|ENST00000374298|AUNIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8682250976562	2	619.868108	1237.72166	0.089003	5.517E-05	1.9977	0.0012383	2.0867	0.0012935	619.8691214704253	104.81	0.62352	104.69	104.38	105	-0.12561					43	18	3	0	0	0	1.0557	1	13025	13025		23.523	5.2606	1	171530			78334	4244	54703	54795	86383	86383					0.11231169001894159
THLILRFKPN	10	Unmodified	_THLILRFKPN_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.870361328125	2	619.87204	1237.72953	0.47562	0.00029482	-4.2923	-0.0026607	-3.8167	-0.0023659	619.8691158640986	96.559	0.51159	96.423	96.101	96.613	-0.13671					29	11	3	0	0	0	1.1246	1	11944	11944		23.523	2.5758	1	188740	+		78335	19690	54704	54796	86384	86384					0.1201706431365892
THLKASVFV	9	Unmodified	_THLKASVFV_					0	0	0			REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.28936767578125	2	501.292559	1000.57057	-0.55827	-0.00027985	-3.5602	-0.0017847	-4.1184	-0.0020645	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.83071	1	10338	10338		37.159	2.9866	1	2156900	+		78336	37543	54705	54797	86385	86385					0.07030350685522535
THLKASVFV	9	Unmodified	_THLKASVFV_					0	0	0			REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	REV__sp|P03215|GM_EBVB9EnvelopeglycoproteinMOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gMPE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.291259765625	2	501.292559	1000.57057	-0.51649	-0.00025891	-4.3022	-0.0021567	-4.8187	-0.0024156	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.89441	1	10654	10654		32.812	2.9709	1	8326900	+		78337	37543	54705	54797	86386	86386					0.07030350685522535
THLKFLARD	9	Unmodified	_THLKFLARD_					0	0	0		nc|ENSG00000175221|Q9Y2X0-2|MED16;ENSG00000175221|ENST00000325464|MED16;nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.8555908203125	2	550.81419	1099.61383	-1.4429	-0.00079476	3.1545	0.0017375	1.7116	0.00094277	550.8151744543578	80.314	0.83702	80.162	79.884	80.721	-0.15168					29	19	2	0	0	0	0.024515	1	9924	9924		35.152	0	1	106950			78338	8542	54706	54798	86387	86387					0.06800540462791105
THLKRESRV	9	Unmodified	_THLKRESRV_					0	0	0			REV__ENSG00000196639|ENST00000431010|HRH1	REV__ENSG00000196639|ENST00000431010|HRH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2590942382812	2	563.327996	1124.64144	-0.55034	-0.00031002	4.2219	0.0023783	3.6716	0.0020683	563.330314098874	27.302	0.21634	27.134	27.013	27.23	-0.16816					6	4	2	0	0	0	0.024541	1	1487	1487		26.693	9.3279	1	41694	+		78339	28208	54707	54799	86388	86388					0.08410443723028038
THLLIHSLML	10	Unmodified	_THLLIHSLML_					0	0	0		ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	ENST00000498066.1_1_2:102484451-102486985:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428955078125	2	589.341726	1176.6689	-0.57069	-0.00033633	2.3802	0.0014028	1.8095	0.0010664	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0271	2	11424	11424;11436		42.396	12.078	1	17343000			78340	15613	54708	54800	86389;86390	86389					0.08763210939059718
THLLLGPVII	10	Unmodified	_THLLLGPVII_					0	0	0			REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3274536132812	2	538.347335	1074.68012	-0.11037	-5.9415E-05	-1.2594	-0.00067799	-1.3698	-0.00073741	538.3463674752436	99.616	0.42672	99.616	99.402	99.829	0					13	9	2	0	0	0	0.03519	1	12758	12758		47.916	18.766	1	168690	+		78341	37576	54709	54801	86391	86391					0.14576356304860383
THLLLGPVII	10	Unmodified	_THLLLGPVII_					0	0	0			REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.3270263671875	2	538.347335	1074.68012	-0.45217	-0.00024343	1.3932	0.00075005	0.94107	0.00050662	538.347845916386	99.594	0.38632	99.605	99.357	99.743	0.010231					21	8	3	0	0	0	0.03519	1	12669	12669		29.15	4.9468	1	200920	+		78342	37576	54709	54801	86392	86392					0.14576356304860383
THLLLGPVII	10	Unmodified	_THLLLGPVII_					0	0	0			REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	REV__SPPL2A|p.I420Lfs*29|1|0.16|ENSG00000138600|chr15:50722193-50722193|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.3270874023438	2	538.347335	1074.68012	-0.73442	-0.00039537	-3.7683	-0.0020286	-4.5027	-0.002424	538.3447463118194	99.791	0.34071	99.62	99.451	99.791	-0.17088					11	9	2	0	0	0	0.03519	1	12361	12361		38.806	17.859	1	233530	+		78343	37576	54709	54801	86393	86393					0.14576356304860383
THLLSRVN	8	Unmodified	_THLLSRVN_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.27227783203125	2	470.272158	938.529764	-0.28847	-0.00013566	0.3685	0.0001733	0.080029	3.7635E-05	470.2722458645397	91.332	2.0416	91.209	90.754	92.796	-0.12341					118	48	4	0	0	0	1.0574	1	11243	11243		26.693	3.6504	1	5650700	+		78344	26054	54710	54802	86394	86394					0.05804009365908769
THLPAELVPL	10	Unmodified	_THLPAELVPL_					0	0	0			REV__ENST00000330292.4_17:80208760-80208973:+|nuORF	REV__ENST00000330292.4_17:80208760-80208973:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.318774	1088.623	-0.47781	-0.00026056	-3.3366	-0.0018195	-3.8144	-0.0020801	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0781	1	10959	10959		35.618	1.4457	1	17400000	+		78345	30456	54711	54803	86395	86395					0.08222889028479585
THLPAELVPL	10	Unmodified	_THLPAELVPL_					0	0	0			REV__ENST00000330292.4_17:80208760-80208973:+|nuORF	REV__ENST00000330292.4_17:80208760-80208973:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3160400390625	2	545.318774	1088.623	-0.379	-0.00020667	-3.8964	-0.0021248	-4.2754	-0.0023314	545.3165662277337	92.124	1.3857	92.001	91.674	93.059	-0.12242					90	32	4	0	0	0	1.1267	1	11340	11340		29.15	1.2673	1	1604000	+		78346	30456	54711	54803	86396	86396					0.08222889028479585
THLQKEIYILL	11	Unmodified	_THLQKEIYILL_					0	0	0			REV__ENSG00000171180|ENST00000641868|OR2M4	REV__ENSG00000171180|ENST00000641868|OR2M4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.6081848144531	3	457.606255	1369.79694	0.55016	0.00025176	3.2855	0.0015035	3.8357	0.0017552	457.6078391724355	98.762	2.7712	98.762	97.058	99.829	0					146	63	3	0	0	0	1.0563	1	12618	12618		23.378	4.8469	1	409620	+		78347	26551	54712	54804	86397	86397					0.12683049733959706
THLQRNLRI	9	Unmodified	_THLQRNLRI_					0	0	0			REV__OR8D4|p.D195Mfs*4|1|0.46|ENSG00000181518|chr11:123907014-123907014|G/-|frameshift_variant	REV__OR8D4|p.D195Mfs*4|1|0.46|ENSG00000181518|chr11:123907014-123907014|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8434448242188	2	575.843813	1149.67307	-0.26488	-0.00015253	-1.2073	-0.00069524	-1.4722	-0.00084777	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	0.80658	1	11393	11393		38.806	4.6336	1	4946400	+		78348	27407	54713	54805	86398	86398					0.10422436476960684
THLRPDRVAL	10	Unmodified	_THLRPDRVAL_					0	0	0			REV__ENSG00000237988|ENST00000641137|OR2I1P	REV__ENSG00000237988|ENST00000641137|OR2I1P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3428344726562	2	589.343646	1176.67274	-1.3447	-0.00079247	-0.0816	-4.809E-05	-1.4263	-0.00084056	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0719	1	11867	11867		36.447	0.82846	1	13724000	+		78349	28946	54714	54806	86399	86399					0.09147016757151505
THLVPSKKAKL	11	Unmodified	_THLVPSKKAKL_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	611.3562622070312	2	611.387522	1220.76049	-1.8666	-0.0011412	3.063	0.0018727	1.1964	0.00073144	611.3880327654338	94.449	0.33025	94.312	94.132	94.463	-0.13779					13	7	3	0	0	0	0.02474	1	11624	11624		47.96	28.856	1	34473	+		78350	26976	54715	54807	86400	86400					0.15894217627896978
THLVSVQIPL	10	Unmodified	_THLVSVQIPL_					0	0	0			REV__ENST00000596456.1_1_19:40948326-40950148:-|nuORF	REV__ENST00000596456.1_1_19:40948326-40950148:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.82958984375	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0393	1	11301	11301		40.778	2.9666	1	4896800	+		78351	35793	54716	54808	86401	86401					0.10094577919812764
THLVSVQIPL	10	Unmodified	_THLVSVQIPL_					0	0	0			REV__ENST00000596456.1_1_19:40948326-40950148:-|nuORF	REV__ENST00000596456.1_1_19:40948326-40950148:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.830078125	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0508	2	10982	10838;10982		39.253	2.8061	1	6583300	+		78352	35793	54716	54808	86402;86403	86403					0.10094577919812764
THLVVQKLNR	10	Unmodified	_THLVVQKLNR_					0	0	0			REV__ENST00000368891.9_1_10:124697547-124708177:-|nuORF	REV__ENST00000368891.9_1_10:124697547-124708177:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.3667602539062	2	604.367121	1206.71969	-0.25622	-0.00015485	-0.39433	-0.00023832	-0.65055	-0.00039317	604.3667044908816	103.38	1.4771	103.25	102.94	104.42	-0.12724					98	36	5	0	0	0	1.1333	1	12879	12879		23.042	1.0826	1	4809400	+		78353	31071	54717	54809	86404	86404					0.12459876308275852
THLYLGEVL	9	Unmodified	_THLYLGEVL_					0	0	0			REV__ENSG00000106018|ENST00000262178|VIPR2;REV__ENSG00000065325|ENST00000262441|GLP2R;REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000065325|ENST00000262441|GLP2R	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3034057617188	2	522.78985	1043.56515	-0.87778	-0.00045889	2.1211	0.0011089	1.2433	0.00065	522.7907493993524	89.419	0.54211	89.256	88.973	89.515	-0.1626					16	12	2	0	0	0	0.024436	1	10947	10947		30.504	14.03	1	70965	+		78354	20306;21589;20651	54718	54810	86405	86405					0.04510627103036313
THLYPQWKKKL	11	Unmodified	_THLYPQWKKKL_					0	0	0		chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2833251953125	3	481.281995	1440.82415	0.24414	0.0001175	2.7609	0.0013288	3.0051	0.0014463	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.0921	1	12903	12903		13.508	0	1	1053600			78355	373	54719	54811	86406	86406					0.12137578064971422
THLYPQWKKKL	11	Unmodified	_THLYPQWKKKL_					0	0	0		chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.283447265625	3	481.281995	1440.82415	-0.010732	-5.1652E-06	3.1733	0.0015273	3.1626	0.0015221	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.09	1	12890	12890		14.086	2.1536	1	1064100			78356	373	54719	54811	86407	86407					0.12137578064971422
THLYPQWKKKL	11	Unmodified	_THLYPQWKKKL_					0	0	0		chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2829895019531	3	481.281995	1440.82415	0.15022	7.2296E-05	3.1997	0.00154	3.3499	0.0016122	481.2833604720617	101.32	1.8982	101.31	100.65	102.55	-0.0054474					137	43	4	0	0	0	0.98082	1	12948	12948		41.08	5.9018	1	1065800			78357	373	54719	54811	86408	86408					0.12137578064971422
THLYPQWKKKL	11	Unmodified	_THLYPQWKKKL_					0	0	0		chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.2839050292969	3	481.281995	1440.82415	1.0554	0.00050794	1.9992	0.00096216	3.0545	0.0014701	481.2829139480189	99.849	1.4264	99.714	98.502	99.929	-0.13526					95	35	3	0	0	0	1.0739	1	12366	12366		18.531	4.445	1	417150			78358	373	54719	54811	86409	86409					0.12137578064971422
THLYPQWKKKL	11	Unmodified	_THLYPQWKKKL_					0	0	0		chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28271484375	3	481.281995	1440.82415	0.87515	0.00042119	2.3768	0.0011439	3.252	0.0015651	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.0327	3	12646	12563;12623;12646		29.551	6.1728	1	1033300			78359	373	54719	54811	86410;86411;86412	86412					0.12137578064971422
THLYPQWKKKL	11	Unmodified	_THLYPQWKKKL_					0	0	0		chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	chr2:177222632-177231889|108|18.44|0.0|20.81|-|1|NFE2L2,NFE2L2|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.28326416015625	3	481.281995	1440.82415	0.38881	0.00018713	2.7616	0.0013291	3.1504	0.0015162	481.28322550437986	101.41	2.0202	101.23	100.66	102.68	-0.17178					149	48	5	0	0	0	1.0074	2	12576	12576;12605		35.178	18.648	1	742900			78360	373	54719	54811	86413;86414	86413					0.12137578064971422
THMLLPAI	8	Unmodified	_THMLLPAI_					0	0	0			REV__ENST00000573023.6_1_16:67984709-67996179:-|nuORF	REV__ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2587890625	2	448.257131	894.499709	0.74944	0.00033594	3.3861	0.0015178	4.1355	0.0018538	448.2585106257318	89.09	1.8304	89.069	88.61	90.44	-0.021645					94	43	4	0	0	0	0.94001	1	11237	11237		46.766	12.594	1	7259500	+		78361	35429	54720	54812	86415	86415					0.04823934376338457
THMRFGFIL	9	Unmodified	_THMRFGFIL_					0	0	0		FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant;FSTL5|p.N690Ifs*4|1|0.24|ENSG00000168843|chr4:161386222-161386222|T/-|frameshift_variant;nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5	FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant	FSTL5|p.I629Nfs*2|1|0.27|ENSG00000168843|chr4:161386405-161386406|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.8455200195312	2	561.299862	1120.58517	-0.4771	-0.0002678	0.42747	0.00023994	-0.049631	-2.7858E-05	561.2992556860155	96.038	0.69057	95.882	95.4	96.091	-0.15646					20	15	2	0	0	0	0.024263	1	11790	11790		42.396	0	1	70822			78362	7873	54721	54813	86416	86416					0.029700995620260073
THMRQHAI	8	Unmodified	_THMRQHAI_					0	0	0			REV__ENSG00000141040|ENST00000395825|ZNF287	REV__ENSG00000141040|ENST00000395825|ZNF287	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.79217529296875	2	497.255985	992.497418	1.0115	0.00050295	-1.3194	-0.00065609	-0.30795	-0.00015313	497.25836861195944	70.703	1.4793	70.703	70.316	71.795	0					77	36	3	0	0	0	0.027866	1	8628	8628		45.952	8.7928	1	365450	+		78363	24062	54722	54814	86417	86417					0.0008689869124509642
THNASPGLRA	10	Unmodified	_THNASPGLRA_					0	0	0		ENST00000360612.4_1_22:50357064-50357445:+|nuORF	ENST00000360612.4_1_22:50357064-50357445:+|nuORF	ENST00000360612.4_1_22:50357064-50357445:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2721557617188	2	512.270147	1022.52574	-1.3044	-0.00066821	2.7625	0.0014152	1.4581	0.00074695	512.2714253725102	106.88	0.89776	106.74	106.43	107.33	-0.1346					126	38	5	0	0	0	1.118	1	13250	13250		30.318	2.4355	1	5095800			78364	12771	54723	54815	86418	86418					0.015379198721802823
THNELMQKKG	10	Unmodified	_THNELMQKKG_					0	0	0		ABCC11|p.S717N|1|0.16|ENSG00000121270|chr16:48198208-48198208|C/T|missense_variant	ABCC11|p.S717N|1|0.16|ENSG00000121270|chr16:48198208-48198208|C/T|missense_variant	ABCC11|p.S717N|1|0.16|ENSG00000121270|chr16:48198208-48198208|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.3060302734375	2	593.305872	1184.59719	-0.89763	-0.00053257	0.9827	0.00058304	0.085064	5.0469E-05	593.3063771708738	63.281	1.4528	63.097	62.671	64.124	-0.18386					98	36	4	0	0	0	0.85955	1	7133	7133		56.721	10.749	1	6469700			78365	5	54724	54816	86419	86419					0.012276715145389971
THNEYNFYVPE	11	Unmodified	_THNEYNFYVPE_					0	0	0		nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;ENSG00000102290|ENST00000682573|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7533264160156	3	471.542091	1411.60444	0.30816	0.00014531	-3.5722	-0.0016844	-3.264	-0.0015391	471.5403578491329	28.337	0.5342	28.418	28.208	28.742	0.080811					20	12	2	0	0	0	0.024809	1	1586	1586		8.4073	0	1	177680			78366	2397	54725	54817	86420	86420					-0.08489317404064423
THNFLGLLI	9	Unmodified	_THNFLGLLI_					0	0	0			REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant;REV__ENSG00000177212|ENST00000641220|OR2T33	REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.2985229492188	2	514.300384	1026.58622	-0.2643	-0.00013593	-3.7987	-0.0019537	-4.063	-0.0020896	514.2983788996071	95.184	0.77753	95.188	94.791	95.569	0.0041199					50	17	4	0	0	0	0.91321	1	12054	12054		31.53	4.4825	1	1155800	+		78367	27092;27094	54726	54818	86421	86421					0.073986372025729
THNFLGLLI	9	Unmodified	_THNFLGLLI_					0	0	0			REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant;REV__ENSG00000177212|ENST00000641220|OR2T33	REV__OR2T12|p.K261Nfs*23|1|0.4|ENSG00000177201|chr1:248294799-248294799|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.2985229492188	2	514.300384	1026.58622	-0.24511	-0.00012606	-4.1484	-0.0021335	-4.3935	-0.0022596	514.2980950801538	95.286	1.1712	95.149	94.723	95.894	-0.13689					65	26	4	0	0	0	0.87448	1	11749	11749		34.173	5.023	1	1439900	+		78368	27092;27094	54726	54818	86422	86422					0.073986372025729
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.37353515625	2	633.369861	1264.72517	1.1238	0.00071176	-2.2404	-0.001419	-1.1166	-0.00070723	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0075	1	12329	12329		35.152	1.2304	1	8250400	+		78369	28655	54727	54819	86423	86423					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3698120117188	2	633.369861	1264.72517	-0.31781	-0.00020129	-0.76957	-0.00048742	-1.0874	-0.00068872	633.3692884562681	93.071	1.2951	93.079	92.225	93.52	0.0077286					82	30	4	0	0	0	0.9728	2	11720	11720;11766		42.864	12.547	1	1519500	+		78370	28655	54727	54819	86424;86425	86424					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.36962890625	2	633.369861	1264.72517	0.56003	0.00035471	-1.6879	-0.0010691	-1.1279	-0.00071437	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.9728	2	12148	12148;12286		42.864	11.23	1	8480900	+		78371	28655	54727	54819	86426;86427	86426					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3704223632812	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.9728	2	11990	11827;11990		42.864	0	1	9245900	+		78372	28655	54727	54819	86428;86429	86429					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3692626953125	2	633.369861	1264.72517	-0.36915	-0.00023381	-0.72408	-0.00045861	-1.0932	-0.00069242	633.3692856842331	93.247	1.3144	93.125	92.182	93.497	-0.12215					76	30	4	0	0	0	0.99553	1	11483	11483		37.812	3.639	1	1726300	+		78373	28655	54727	54819	86430	86430					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3689575195312	2	633.369861	1264.72517	0.30625	0.00019397	-1.5688	-0.00099361	-1.2625	-0.00079964	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	0.99129	2	11847	11847;11920		38.754	10.672	1	9528000	+		78374	28655	54727	54819	86431;86432	86431					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3689575195312	2	633.369861	1264.72517	-0.22417	-0.00014198	-1.0302	-0.00065251	-1.2544	-0.00079449	633.3690599981089	93.272	1.3142	93.128	92.169	93.483	-0.1441					76	30	4	0	0	0	1.0075	1	11491	11491		35.152	2.3396	1	1667300	+		78375	28655	54727	54819	86433	86433					0.1033955510006308
THNRIHTG	8	Unmodified	_THNRIHTG_					0	0	0		ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.2445983886719	2	468.243932	934.473312	-0.29637	-0.00013877	2.1498	0.0010066	1.8535	0.00086788	468.24482454750677	103.1	1.9832	103.1	102.26	104.24	0					119	47	4	0	0	0	1.0009	1	13236	13236		37.159	1.5408	1	6721300			78376	38195	54728	54820	86434	86434					0.0034538152923460075
THNRIHTG	8	Unmodified	_THNRIHTG_					0	0	0		ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.244873046875	2	468.243932	934.473312	0.2011	9.4162E-05	1.6452	0.00077038	1.8463	0.00086454	468.2445715077833	103.12	2.3598	103.12	102.32	104.68	0.0054245					123	59	5	0	0	0	0.97924	1	13196	13196		40.573	5.3719	1	6608800			78377	38195	54728	54820	86435	86435					0.0034538152923460075
THNRRHRT	8	Unmodified	_THNRRHRT_					0	0	0			REV__ENSG00000196456|ENST00000329630|ZNF775	REV__ENSG00000196456|ENST00000329630|ZNF775	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.73828125	2	539.292279	1076.57001	0.29399	0.00015855	-1.3679	-0.00073772	-1.0739	-0.00057917	539.2912954897074	36.759	1.1101	36.549	36.043	37.153	-0.2092					62	27	3	0	0	0	0.027866	1	2901	2901		35.618	0	1	526440	+		78378	28185	54729	54821	86436	86436					0.034783688090328724
THNRVFLK	8	Unmodified	_THNRVFLK_					0	0	0			REV__ENSG00000227124|ENST00000652011|ZNF717	REV__ENSG00000227124|ENST00000652011|ZNF717	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.8133850097656	2	507.795801	1013.57705	-1.5142	-0.0007689	-0.53152	-0.00026991	-2.0457	-0.0010388	507.7950276883861	92.948	0.12992	92.804	92.739	92.869	-0.14356					4	2	2	0	0	0	0.027866	1	11431	11431		25.45	7.1258	1	22977	+		78379	28881	54730	54822	86437	86437					0.07080288636905152
THNSSYLIL	9	Unmodified	_THNSSYLIL_					0	0	0			REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.797607421875	2	524.277106	1046.53966	-0.56848	-0.00029804	3.5073	0.0018388	2.9388	0.0015407	524.2787293960329	39.415	1.3454	39.415	38.935	40.281	0					70	37	2	0	0	0	0.024323	1	3448	3448		35.618	8.9254	1	1934900	+		78380	21405	54731	54823	86438	86438					0.018251525806363134
THPALDGHPQP	11	Unmodified	_THPALDGHPQP_					0	0	0		ENSG00000174885|ENST00000534750|NLRP6;nc|ENSG00000174885|P59044|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.8185424804688	2	585.288537	1168.56252	0.25107	0.00014695	3.224	0.001887	3.4751	0.0020339	585.2895710292103	19	0.44499	18.839	18.589	19.034	-0.16079					11	8	2	0	0	0	0.024771	1	358	358		21.686	0	1	34115			78381	8505	54732	54824	86439	86439					-0.01501828301934438
THPFNTLYC	9	Unmodified	_THPFNTLYC_					0	0	0			REV__ENST00000541245.1_2_17:38334535-38337880:+|nuORF	REV__ENST00000541245.1_2_17:38334535-38337880:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.276123046875	2	548.250034	1094.48552	-0.98864	-0.00054202	-2.4984	-0.0013697	-3.487	-0.0019118	548.2484372013614	27.641	3.585	27.641	25.527	29.112	0					142	88	3	0	0	0	0.024535	1	1742	1742		25.45	7.1258	1	441640	+		78382	34766	54733	54825	86440	86440					-0.0579476284260636
THPFNTLYC	9	Unmodified	_THPFNTLYC_					0	0	0			REV__ENST00000541245.1_2_17:38334535-38337880:+|nuORF	REV__ENST00000541245.1_2_17:38334535-38337880:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.250034	1094.48552	-0.97367	-0.00053381	-2.5981	-0.0014244	-3.5717	-0.0019582	548.248423104213	27.615	2.7299	27.602	26.093	28.823	-0.012983	0.059246	-0.00019952	NaN	18.324	144	68	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316100	+		78383	34766	54733	54825							-0.0579476284260636
THPFNTLYC	9	Unmodified	_THPFNTLYC_					0	0	0			REV__ENST00000541245.1_2_17:38334535-38337880:+|nuORF	REV__ENST00000541245.1_2_17:38334535-38337880:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.250034	1094.48552	-1.3748	-0.00075376	-2.2082	-0.0012107	-3.5831	-0.0019644	548.2486780095801	27.305	2.9915	27.387	25.624	28.615	0.081293	-0.15655	0.00022793	NaN	18.324	106	74	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399260	+		78384	34766	54733	54825							-0.0579476284260636
THPFQLTVD	9	Unmodified	_THPFQLTVD_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.273681640625	2	529.269281	1056.52401	-1.7467	-0.00092445	1.9678	0.0010415	0.22117	0.00011706	529.2696535693706	92.143	0.33657	91.999	91.791	92.127	-0.14356					12	7	2	0	0	0	0.024427	1	11278	11278		34.173	2.6427	1	63775			78385	10406	54734	54826	86441	86441					-0.0019913393641672883
THPFQLTVD	9	Unmodified	_THPFQLTVD_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2733764648438	2	529.269281	1056.52401	-0.62328	-0.00032988	-2.1658	-0.0011463	-2.7891	-0.0014762	529.2655966195476	92.176	0.81319	92.054	91.329	92.142	-0.12242					27	18	3	0	0	0	0.024344	1	11297	11297		37.812	11.119	1	52369			78386	10406	54734	54826	86442	86442					-0.0019913393641672883
THPHANKLPLK	11	Unmodified	_THPHANKLPLK_					0	0	0		nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3;ENSG00000183576|ENST00000331768|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.16595458984375	3	419.247173	1254.71969	0.27264	0.0001143	0.040261	1.6879E-05	0.3129	0.00013118	419.246985322976	23.039	0.55993	22.837	22.593	23.153	-0.20193					35	11	4	0	0	0	0.02477	1	856	856		28.577	20.169	1	168030			78387	9244	54735	54827	86443	86443					0.10251876308257124
THPHANKLPLK	11	Unmodified	_THPHANKLPLK_					0	0	0		nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3;ENSG00000183576|ENST00000331768|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	419.247173	1254.71969	1.6498	0.00069167	-1.7547	-0.00073565	-0.1049	-4.3978E-05	419.24618420194236	23.115	0.58387	22.924	22.664	23.248	-0.19117	0.034984	-0.0017793	NaN	22.562	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172030			78388	9244	54735	54827							0.10251876308257124
THPHSKAP	8	Unmodified	_THPHSKAP_					0	0	0		nc|ENSG00000174807|Q9HCU0-2|CD248;ENSG00000174807|ENST00000311330|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.93402099609375	2	437.730126	873.4457	0.97457	0.0004266	-0.017917	-7.843E-06	0.95665	0.00041876	437.73000590079903	20.172	0.58039	19.977	19.805	20.385	-0.19577					17	11	2	0	0	0	0.027866	1	552	552		12.959	0	1	8807.3			78389	8500	54736	54828	86444	86444					0.003914782690003449
THPHSKAP	8	Unmodified	_THPHSKAP_					0	0	0		nc|ENSG00000174807|Q9HCU0-2|CD248;ENSG00000174807|ENST00000311330|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	437.730126	873.4457	0.95292	0.00041712	0.040843	1.7878E-05	0.99376	0.000435	437.7298349648099	20.189	0.58468	19.966	19.582	20.167	-0.22344	-0.0053245	3.1659E-05	NaN	12.959	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15351			78390	8500	54736	54828							0.003914782690003449
THPKLRGG	8	Unmodified	_THPKLRGG_					0	0	0		ENST00000526977.5_1_8:145651218-145651356:-|nuORF	ENST00000526977.5_1_8:145651218-145651356:-|nuORF	ENST00000526977.5_1_8:145651218-145651356:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.73199462890625	2	433.253769	864.492984	0.26494	0.00011479	0.53138	0.00023022	0.79632	0.00034501	433.25399375246496	98.378	0.49828	98.378	98.063	98.562	0					13	11	2	0	0	0	0.027866	1	12544	12544		25.45	4.9683	1	74607			78391	16137	54737	54829	86445	86445					0.05531757539995397
THPKLRGG	8	Unmodified	_THPKLRGG_					0	0	0		ENST00000526977.5_1_8:145651218-145651356:-|nuORF	ENST00000526977.5_1_8:145651218-145651356:-|nuORF	ENST00000526977.5_1_8:145651218-145651356:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	433.253769	864.492984	0.9108	0.00039461	0.10118	4.3835E-05	1.012	0.00043844	433.25347894424544	98.48	0.30939	98.343	98.147	98.456	-0.13625	-0.068677	0.00044921	NaN	25.45	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68084			78392	16137	54737	54829							0.05531757539995397
THPKLRGG	8	Unmodified	_THPKLRGG_					0	0	0		ENST00000526977.5_1_8:145651218-145651356:-|nuORF	ENST00000526977.5_1_8:145651218-145651356:-|nuORF	ENST00000526977.5_1_8:145651218-145651356:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	433.253769	864.492984	1.3111	0.00056802	-6.5011	-0.0028166	-5.19	-0.0022486	433.2501421297078	98.632	0.60014	98.508	98.111	98.711	-0.12413	0.096334	-0.0052717	NaN	25.45	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102510			78393	16137	54737	54829							0.05531757539995397
THPMKTSH	8	Unmodified	_THPMKTSH_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	469.745849609375	2	469.729269	937.443985	1.1119	0.0005223	-0.92925	-0.0004365	0.18267	8.5805E-05	469.72864890273354	20.255	1.1222	20.059	19.657	20.779	-0.19577					41	22	2	0	0	0	0.027866	1	468	468		13.775	4.0697	1	60073			78394	1188	54738	54830	86446	86446					-0.027238988112685547
THPQDKDTV	9	Unmodified	_THPQDKDTV_					0	0	0			REV__nc|ENSG00000170558|P19022-2|CDH2	REV__nc|ENSG00000170558|P19022-2|CDH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.766845703125	2	520.753995	1039.49344	0.40052	0.00020857	0.25842	0.00013457	0.65894	0.00034314	520.7540554690221	47.971	0.37867	47.785	47.673	48.052	-0.18684					13	9	2	0	0	0	0.024209	1	4732	4732		39.253	0	1	213860	+		78395	26485	54739	54831	86447	86447					-0.024729123214683568
THPRRLLL	8	Unmodified	_THPRRLLL_					0	0	0		ENST00000570002.2_1_17:44344573-44344858:+|nuORF	ENST00000570002.2_1_17:44344573-44344858:+|nuORF	ENST00000570002.2_1_17:44344573-44344858:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.3177795410156	2	503.319443	1004.62433	-0.11037	-5.5551E-05	-4.1986	-0.0021132	-4.309	-0.0021688	503.3171297562448	52.702	0.93991	52.444	52.135	53.075	-0.25839					59	23	4	0	0	0	0.99042	1	5488	5488		38.806	6.8513	1	2315900			78396	17016	54740	54832	86448	86448					0.12220567907911573
THPRVPRR	8	Unmodified	_THPRVPRR_					0	0	0			REV__ENSG00000107959|ENST00000224949|PITRM1	REV__ENSG00000107959|ENST00000224949|PITRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8035888671875	2	509.804491	1017.59443	0.60396	0.0003079	-2.4063	-0.0012268	-1.8024	-0.00091885	509.80316832379725	83.279	2.7899	83.067	81.496	84.286	-0.21159					160	64	4	0	0	0	1.0574	1	10023	10023		25.45	1.9275	1	1089300	+		78397	21703	54741	54833	86449	86449					0.08633628962559214
THPSKVCM	8	Oxidation (M)	_THPSKVCM(Oxidation (M))_		THPSKVCM(1)		THPSKVCM(41)	0	0	1		ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.71197509765625	2	459.71223	917.409908	0.049988	2.298E-05	-2.916	-0.0013405	-2.866	-0.0013175	459.71073256429133	102.77	0.72802	102.77	102.37	103.1	0.0054245					43	17	4	0	0	0	0.97924	1	13146	13146		40.573	7.7602	1	653620			78398	16111	54742	54834	86450	86450		531			-0.052100632945212055
THPSKVCM	8	Oxidation (M)	_THPSKVCM(Oxidation (M))_		THPSKVCM(1)		THPSKVCM(41)	0	0	1		ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.7115783691406	2	459.71223	917.409908	0.37435	0.00017209	-2.9884	-0.0013738	-2.6141	-0.0012017	459.71061651621784	102.9	0.69465	102.77	102.49	103.19	-0.12724					35	16	3	0	0	0	0.97924	1	12786	12786		40.573	15.122	1	556700			78399	16111	54742	54834	86451	86451		531			-0.052100632945212055
THPSKVCM	8	Oxidation (M)	_THPSKVCM(Oxidation (M))_		THPSKVCM(1)		THPSKVCM(51)	0	0	1		ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.71142578125	2	459.71223	917.409908	0.36398	0.00016733	-3.7387	-0.0017187	-3.3747	-0.0015514	459.7106193820645	103.01	1.0727	102.84	102.05	103.12	-0.17034					61	25	6	0	0	0	0.89627	1	12794	12794		51.335	14.176	1	964340			78400	16111	54742	54834	86452	86452		531			-0.052100632945212055
THPSKVCM	8	Oxidation (M)	_THPSKVCM(Oxidation (M))_					0	0	1		ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	ENST00000526104.5_2_11:214726-214972:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	459.71223	917.409908	-0.26453	-0.00012161	-2.4818	-0.0011409	-2.7463	-0.0012625	459.71090482391975	102.79	0.86288	102.79	102.35	103.21	0	-0.0028303	0.00040725	NaN	51.335	48	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	623520			78401	16111	54742	54834				531			-0.052100632945212055
THPVLIPAEL	10	Unmodified	_THPVLIPAEL_					0	0	0			REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	MSMS	OPSCC_39_ClassI_Rep-3	3	545.3174438476562	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.766	1	92.773	92.273	93.273	0.0077286								0	0	0	0.75225	1	11696	11696		44.117	1.7207	1		+		78402	28849	54743	54835	86453	86453					0.08222889028479585
THPVLIPAEL	10	Unmodified	_THPVLIPAEL_					0	0	0			REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	REV__nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.316162109375	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.089	1	10467	10467		34.173	8.5985	1	4936700	+		78403	28849	54743	54835	86454	86454					0.08222889028479585
THPYSALLR	9	Unmodified	_THPYSALLR_					0	0	0			REV__nc|ENSG00000106003|Q8NES3-2|LFNG	REV__nc|ENSG00000106003|Q8NES3-2|LFNG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.2894897460938	2	529.293091	1056.57163	-1.351	-0.00071505	-2.2972	-0.0012159	-3.6481	-0.0019309	529.2917791013601	25.212	0.43925	25.212	24.964	25.403	0					17	10	2	0	0	0	0.024506	1	1155	1155		30.504	3.7075	1	164310	+		78404	21587	54744	54836	86455	86455					0.04560565054430299
THQFFKTD	8	Unmodified	_THQFFKTD_					0	0	0		ENSG00000073756|ENST00000367468|PTGS2;ENST00000490885.6_1_1:186645551-186649536:-|nuORF	ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2821044921875	2	512.248349	1022.48214	-0.48078	-0.00024628	4.4066	0.0022573	3.9258	0.002011	512.2522885100872	61.514	0.6194	61.256	60.927	61.547	-0.25725					30	14	4	0	0	0	0.027866	1	6908	6908		29.15	3.6994	1	230760			78405	1517	54745	54837	86456	86456					-0.028196896249369274
THQGAGRPL	9	Unmodified	_THQGAGRPL_					0	0	0			REV__ENST00000430825.3_1_7:156461725-156469144:-|nuORF	REV__ENST00000430825.3_1_7:156461725-156469144:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.75592041015625	2	468.754133	935.493713	0.11329	5.3107E-05	3.4609	0.0016223	3.5742	0.0016754	468.75562813213844	94.296	1.214	94.302	93.971	95.185	0.0059814					78	28	4	0	0	0	0.94809	1	11928	11928		29.15	3.6994	1	2570500	+		78406	32360	54746	54838	86457	86457					0.02338552189053189
THQGPPLA	8	Unmodified	_THQGPPLA_					0	0	0		BMP7|p.T113_Q114insH|1|0.24|ENSG00000101144|chr20:57265781-57265782|-/TGG|inframe_insertion	BMP7|p.T113_Q114insH|1|0.24|ENSG00000101144|chr20:57265781-57265782|-/TGG|inframe_insertion	BMP7|p.T113_Q114insH|1|0.24|ENSG00000101144|chr20:57265781-57265782|-/TGG|inframe_insertion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	410.7185974121094	2	410.719227	819.423902	0.96756	0.0003974	-1.8848	-0.00077414	-0.91727	-0.00037674	410.7183696284328	96.072	1.6868	95.949	95.421	97.108	-0.12305					87	38	4	0	0	0	1.0574	1	11873	11873		20.482	1.1219	1	1564100			78407	188	54747	54839	86458	86458					0.006966735204287033
THQMLLQT	8	Unmodified	_THQMLLQT_					0	0	0		ENST00000539690.1_1_12:121163604-121175022:+|nuORF;ENSG00000122971|ENST00000242592|ACADS	ENST00000539690.1_1_12:121163604-121175022:+|nuORF	ENST00000539690.1_1_12:121163604-121175022:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3126220703125	2	486.252577	970.490601	-1.1657	-0.00056684	-2.2427	-0.0010905	-3.4084	-0.0016573	486.25145956704137	44.345	0.60035	44.345	44.022	44.622	0					28	17	2	0	0	0	0.027866	1	4215	4215		44.117	13.613	1	319440			78408	3951	54748	54840	86459	86459					0.004175410200218721
THQQMRTL	8	Unmodified	_THQQMRTL_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.8133850097656	2	507.761101	1013.50765	-0.35835	-0.00018196	-0.9735	-0.00049431	-1.3319	-0.00067626	508.26196125959837	93.064	0.89353	93.064	92.708	93.602	0					14	10	2	0	0	0	0.027866	1	11853	11853		24.203	0	1	87645			78409	587	54749	54841	86460	86460					0.001434616258393362
THQRIFGK	8	Unmodified	_THQRIFGK_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.29754638671875	2	493.780151	985.545748	0.44162	0.00021806	-2.6225	-0.001295	-2.1809	-0.0010769	493.7790737942756	84.532	0.9995	84.532	84.041	85.04	0					58	23	3	0	0	0	0.027866	1	10635	10635		25.45	0	1	414880			78410	18132	54750	54842	86461	86461					0.05239715602806427
THQSDSLFF	9	Unmodified	_THQSDSLFF_					0	0	0			REV__SCUBE1|p.N152S|1|0.29|ENSG00000159307|chr22:43291075-43291075|T/C|missense_variant	REV__SCUBE1|p.N152S|1|0.29|ENSG00000159307|chr22:43291075-43291075|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.8001708984375	2	541.251089	1080.48762	-1.4183	-0.00076766	4.2339	0.0022916	2.8156	0.0015239	541.2538781472458	34.594	0.87295	34.418	34.011	34.884	-0.17557					34	21	2	0	0	0	0.024539	1	2521	2521		20.947	0	1	71849	+		78411	37468	54751	54843	86462	86462					-0.049400108331155934
THRAPGAR	8	Unmodified	_THRAPGAR_					0	0	0		ENST00000332272.8_1_16:75513067-75513235:-|nuORF	ENST00000332272.8_1_16:75513067-75513235:-|nuORF	ENST00000332272.8_1_16:75513067-75513235:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.28240966796875	2	433.241193	864.467832	0.40335	0.00017475	2.871	0.0012438	3.2744	0.0014186	433.2422915171321	51.487	0.90996	51.487	51.067	51.977	0					56	25	4	0	0	0	0.027866	1	5542	5542		38.806	0	1	1750600			78412	12354	54752	54844	86463	86463					0.030177027374179488
THRFSTKS	8	Unmodified	_THRFSTKS_					0	0	0		ENSG00000141068|ENST00000644974|KSR1;nc|ENSG00000141068|Q8IVT5-3|KSR1;nc|ENSG00000141068|Q8IVT5|KSR1;nc|ENSG00000141068|Q8IVT5-4|KSR1;nc|ENSG00000141068|Q8IVT5-2|KSR1;KSR1|p.Y604*|1|0.26|ENSG00000141068|chr17:27609259-27609260|TA/-|frameshift_variant	ENSG00000141068|ENST00000644974|KSR1	ENSG00000141068|ENST00000644974|KSR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.2546691894531	2	482.253966	962.493378	-0.064952	-3.1323E-05	1.3474	0.00064978	1.2824	0.00061845	482.254554327035	30.848	1.3171	30.607	30.248	31.565	-0.24109					52	32	2	0	0	0	1.0106	1	1996	1996		35.618	2.1027	1	2619200			78413	5468	54753	54845	86464	86464					0.010631324691871669
THRGRQTP	8	Unmodified	_THRGRQTP_					0	0	0			REV__nc|ENSG00000243566|Q9BT76|UPK3B	REV__nc|ENSG00000243566|Q9BT76|UPK3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.75750732421875	2	476.757207	951.499861	0.37525	0.0001789	1.3395	0.0006386	1.7147	0.0008175	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.97924	1	13255	13255		40.573	1.7665	1	4565500	+		78414	37161	54754	54846	86465	86465					0.022170704205564107
THRIMHSQ	8	Unmodified	_THRIMHSQ_					0	0	0			REV__ENSG00000249709|ENST00000339282|ZNF564	REV__ENSG00000249709|ENST00000339282|ZNF564	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.2594299316406	2	505.253443	1008.49233	0.61793	0.00031221	4.0483	0.0020454	4.6662	0.0023576	505.2546554727589	22.786	0.46426	22.584	22.421	22.886	-0.20199					17	9	2	0	0	0	0.027866	1	813	813		29.15	3.5755	1	119200	+		78415	29018	54755	54847	86466	86466					-0.011574051713637346
THRLNTEAP	9	Unmodified	_THRLNTEAP_					0	0	0			REV__ENST00000489818.5_1_1:182354893-182357872:-|nuORF	REV__ENST00000489818.5_1_1:182354893-182357872:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.781982421875	2	519.76998	1037.52541	-0.42885	-0.0002229	-2.0974	-0.0010901	-2.5262	-0.001313	519.7692668049472	78.779	0.5049	78.798	78.483	78.987	0.018677					17	11	2	0	0	0	0.024523	1	9702	9702		21.96	0	1	134320	+		78416	23581	54756	54848	86467	86467					0.008145001523189421
THRNKGQYDV	10	Unmodified	_THRNKGQYDV_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.2454528808594	3	406.538904	1216.59488	0.49061	0.00019945	-0.035969	-1.4623E-05	0.45464	0.00018483	406.5387319743706	31.509	0.44895	31.509	31.3	31.749	0					26	10	3	0	0	0	0.03519	1	2121	2121		10.587	0	1	257300	+		78417	26284	54757	54849	86468	86468					-0.004750408989139032
THRPAQGPW	9	Unmodified	_THRPAQGPW_					0	0	0		nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2359619140625	2	525.267407	1048.52026	-0.80373	-0.00042217	-1.5346	-0.00080609	-2.3384	-0.0012283	525.2659610612837	25.657	0.49776	25.43	25.105	25.602	-0.22683					24	11	3	0	0	0	0.02435	1	1241	1241		51.335	22.165	1	82305			78418	18127	54758	54850	86469	86469					-0.002057589196056142
THRPPWLN	8	Unmodified	_THRPPWLN_					0	0	0			REV__ENST00000590949.5_1_17:40439920-40440070:+|nuORF	REV__ENST00000590949.5_1_17:40439920-40440070:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7885437011719	2	510.772326	1019.5301	0.19981	0.00010206	1.3658	0.00069761	1.5656	0.00079967	511.2746718474543	85.988	0.56623	85.85	85.702	86.268	-0.13734					13	12	2	0	0	0	0.027866	1	10410	10410		30.504	0	1	84590	+		78419	35713	54759	54851	86470	86470					0.02111429085744021
THRQASRP	8	Unmodified	_THRQASRP_					0	0	0		SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|37|3|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|19|2|sense	SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|37|3|sense	SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|37|3|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.75799560546875	2	476.757207	951.499861	0.38446	0.00018329	1.1705	0.00055806	1.555	0.00074135	476.75766316682655	103.71	1.8057	103.54	102.91	104.72	-0.16791					135	46	4	0	0	0	1.0574	1	12963	12963		24.203	3.7209	1	2252400			78420	37990	54760	54852	86471	86471					0.022170704205677794
THRQHLDD	8	Unmodified	_THRQHLDD_					0	0	0		ENSG00000120071|ENST00000432791|KANSL1;nc|ENSG00000120071|Q7Z3B3-2|KANSL1;ENST00000572218.5_2_17:44108844-44117263:-|nuORF	ENSG00000120071|ENST00000432791|KANSL1	ENSG00000120071|ENST00000432791|KANSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7885437011719	2	511.244129	1020.47371	0.31181	0.00015941	2.3212	0.0011867	2.633	0.0013461	511.7479847465772	85.703	0.85036	85.565	85.155	86.006	-0.13752					23	19	2	0	0	0	0.027866	1	10410	10410		29.15	0	1	160850			78421	3792	54761	54853	86472	86472					-0.035712435415803157
THRRLHAK	8	Unmodified	_THRRLHAK_					0	0	0			REV__ENSG00000163884|ENST00000296233|KLF15	REV__ENSG00000163884|ENST00000296233|KLF15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8023681640625	2	509.804491	1017.59443	-0.090625	-4.6201E-05	-0.51032	-0.00026016	-0.60094	-0.00030636	509.8043774925809	88.366	1.288	88.235	87.993	89.281	-0.13135					62	30	3	0	0	0	0.94517	1	10783	10783		45.952	7.1458	1	423260	+		78422	25651	54762	54854	86473	86473					0.08633628962559214
THRSTAKL	8	Unmodified	_THRSTAKL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.26544189453125	2	457.264333	912.514114	0.3229	0.00014765	0.74381	0.00034012	1.0667	0.00048777	457.2642715497568	94.329	1.9745	94.207	93.754	95.729	-0.12215					93	45	3	0	0	0	0.91239	1	11617	11617		50.025	0	1	1315300			78423	3177	54763	54855	86474	86474					0.05435722848869773
THRTLARRAR	10	Unmodified	_THRTLARRAR_					0	0	0		ENST00000258796.11_1_7:2701400-2702321:+|nuORF	ENST00000258796.11_1_7:2701400-2702321:+|nuORF	ENST00000258796.11_1_7:2701400-2702321:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.25042724609375	3	413.2498	1236.72757	0.25678	0.00010611	0.36784	0.00015201	0.62462	0.00025812	413.249489342252	100.34	0.46447	100.17	100.07	100.54	-0.17088					19	13	2	0	0	0	1.1329	1	12451	12451		20.03	4.0237	1	253340			78424	11428	54764	54856	86475	86475					0.11867448348402831
THRTTKVKKSP	11	Unmodified	_THRTTKVKKSP_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.88330078125	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0465	1	12021	12021		26.063	3.4837	1	3558500			78425	8660	54765	54857	86476	86476					0.12211243991418996
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.857177734375	2	597.856921	1193.69929	-2.5283	-0.0015116	1.9886	0.0011889	-0.53969	-0.00032266	598.3599525204835	90.759	2.4584	90.759	89.27	91.729	0					148	58	3	0	0	0	1.0447	1	11523	11523		40.058	7.2458	1	2275200	+		78426	34840	54766	54858	86477	86477					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8555908203125	2	597.856921	1193.69929	-0.78863	-0.00047149	0.12393	7.4092E-05	-0.6647	-0.0003974	598.358780099829	90.777	2.8733	90.76	88.87	91.743	-0.016716					174	68	3	0	0	0	1.0447	1	11431	11431		40.058	0.80534	1	2218500	+		78427	34840	54766	54858	86478	86478					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8556518554688	2	597.856921	1193.69929	-1.0361	-0.00061944	-0.20101	-0.00012018	-1.2371	-0.00073961	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.0236	1	11680	11680		42.864	5.0528	1	4942300	+		78428	34840	54766	54858	86479	86479					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8562622070312	2	597.856921	1193.69929	-0.69485	-0.00041542	-0.48603	-0.00029058	-1.1809	-0.000706	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.94316	2	11737	11675;11737		51.193	11.94	1	4386000	+		78429	34840	54766	54858	86480;86481	86481					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8563232421875	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0002	2	11367	11367;11597		45.972	6.7194	1	5655800	+		78430	34840	54766	54858	86482;86483	86482					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8561401367188	2	597.856921	1193.69929	-0.56215	-0.00033608	-0.78641	-0.00047016	-1.3486	-0.00080624	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	1.0616	1	11374	11374		37.812	6.2817	1	5880700	+		78431	34840	54766	54858	86484	86484					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.856689453125	2	597.856921	1193.69929	0.028254	1.6892E-05	-0.51885	-0.0003102	-0.4906	-0.00029331	598.3585788626698	90.988	1.6784	90.848	90.115	91.794	-0.13942					112	39	3	0	0	0	1.0616	1	11260	11260		37.812	4.9991	1	2547700	+		78432	34840	54766	54858	86485	86485					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8558959960938	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.118	1	11311	11311		30.318	1.1477	1	5598500	+		78433	34840	54766	54858	86486	86486					0.11018705648461946
THSASTKYA	9	Unmodified	_THSASTKYA_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2540283203125	2	483.237981	964.461409	-0.16698	-8.069E-05	0.28686	0.00013862	0.11988	5.7931E-05	483.23785443365523	30.775	0.95262	30.532	30.08	31.032	-0.24311					30	22	2	0	0	0	0.024323	1	1986	1986		44.117	16.235	1	88671			78434	4620	54767	54859	86487	86487					-0.022242800046115008
THSASTKYA	9	Unmodified	_THSASTKYA_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	483.237981	964.461409	-0.43986	-0.00021255	-0.70585	-0.00034109	-1.1457	-0.00055365	483.2374931576544	30.743	0.41494	30.754	30.498	30.913	0.010664	0.099399	-0.00070305	NaN	44.117	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132060			78435	4620	54767	54859							-0.022242800046115008
THSASTKYA	9	Unmodified	_THSASTKYA_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	483.237981	964.461409	-0.5744	-0.00027757	-0.16597	-8.0203E-05	-0.74037	-0.00035777	483.23771148217565	30.848	0.66372	30.923	30.708	31.372	0.074316	0.26817	-0.00018127	NaN	44.117	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105300			78436	4620	54767	54859							-0.022242800046115008
THSELVKSL	9	Unmodified	_THSELVKSL_					0	0	0		UBR2|p.A792T|1|0.26|ENSG00000024048|chr6:42645555-42645555|G/A|missense_variant	UBR2|p.A792T|1|0.26|ENSG00000024048|chr6:42645555-42645555|G/A|missense_variant	UBR2|p.A792T|1|0.26|ENSG00000024048|chr6:42645555-42645555|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.28070068359375	2	507.284931	1012.55531	-0.074823	-3.7956E-05	-0.80323	-0.00040747	-0.87806	-0.00044542	507.28451644448074	104.9	0.57935	104.9	104.51	105.09	0.00096893					31	18	2	0	0	0	0.87448	1	13426	13426		34.173	5.023	1	213670			78437	38124	54768	54860	86488	86488					0.04953439097675982
THSFLLMVM	9	2 Oxidation (M)	_THSFLLM(Oxidation (M))VM(Oxidation (M))_		THSFLLM(1)VM(1)		THSFLLM(60)VM(60)	0	0	2		ENSG00000171936|ENST00000641646|OR10H3	ENSG00000171936|ENST00000641646|OR10H3	ENSG00000171936|ENST00000641646|OR10H3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7708740234375	2	555.769745	1109.52494	-0.15694	-8.7225E-05	-3.4566	-0.0019211	-3.6135	-0.0020083	555.7679964596921	99.404	1.0568	99.236	98.671	99.728	-0.16863					40	25	2	0	0	0	0.4855	1	12339	12339		60.294	14.342	1	72107			78438	8219	54769	54861	86489	86489		339;340			-0.025443788833626968
THSGGPDVPG	10	Unmodified	_THSGGPDVPG_					0	0	0			REV__ENST00000607353.1_1_12:46931339-46965140:+|nuORF	REV__ENST00000607353.1_1_12:46931339-46965140:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2322082519531	2	462.214506	922.414459	-0.9673	-0.0004471	-2.0619	-0.00095305	-3.0292	-0.0014001	462.2137427137265	28.657	0.29034	28.657	28.571	28.862	0					9	6	2	0	0	0	0.03519	1	1709	1709		27.882	1.0861	1	35422	+		78439	35951	54770	54862	86490	86490					-0.049851395557539036
THSGRLQTP	9	Unmodified	_THSGRLQTP_					0	0	0			REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.77496337890625	2	498.764697	995.514842	0.37235	0.00018572	-3.686	-0.0018384	-3.3136	-0.0016527	498.762736486736	100.92	0.82928	100.91	100.62	101.44	-0.0054474					37	19	3	0	0	0	0.024292	1	12853	12853		32.812	0	1	316340	+		78440	23476	54771	54863	86491	86491					0.01690517497888777
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.869384765625	2	619.87204	1237.72953	-0.90509	-0.00056104	-3.4841	-0.0021597	-4.3892	-0.0027207	619.869711333175	92.412	2.3777	92.412	91.051	93.429	0					189	56	4	0	0	0	1.0508	1	11741	11741		39.253	4.1008	1	1314500			78441	959	54772	54864	86492	86492					0.1201706431365892
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.869384765625	2	619.87204	1237.72953	-0.39228	-0.00024317	-3.8743	-0.0024016	-4.2666	-0.0026447	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.0508	2	12086	11981;12086		39.253	8.0071	1	4658300			78442	959	54772	54864	86493;86494	86494					0.1201706431365892
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8690185546875	2	619.87204	1237.72953	-1.0156	-0.00062956	-3.2113	-0.0019906	-4.2269	-0.0026202	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	0.85955	4	11850	11850;11887;11899;11910		56.721	13.857	1	4459000			78443	959	54772	54864	86495;86496;86497;86498	86495					0.1201706431365892
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.86865234375	2	619.87204	1237.72953	-1.6623	-0.0010304	-2.7538	-0.001707	-4.4161	-0.0027374	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	1.089	1	11348	11348		34.173	2.2177	1	1925500			78444	959	54772	54864	86499	86499					0.1201706431365892
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8690795898438	2	619.87204	1237.72953	-0.47108	-0.00029201	-3.6909	-0.0022879	-4.162	-0.0025799	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	0.85955	3	11608	11608;11644;11831		56.721	25.191	1	4765600			78445	959	54772	54864	86500;86501;86502	86500					0.1201706431365892
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8692626953125	2	619.87204	1237.72953	-0.13269	-8.2249E-05	-4.0649	-0.0025197	-4.1976	-0.002602	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	0.91678	2	11575	11575;11624		52.937	17.785	1	4730400			78446	959	54772	54864	86503;86504	86503					0.1201706431365892
THSIWHILL	9	Unmodified	_THSIWHILL_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7665405273438	2	560.319109	1118.62366	0.21008	0.00011771	-1.3325	-0.00074664	-1.1225	-0.00062893	560.3180937069299	22.74	0.74644	22.551	22.374	23.12	-0.18894					26	15	2	0	0	0	0.024541	1	834	834		12.959	0	1	43989			78447	4371	54773	54865	86505	86505					0.06909728468212961
THSIYVIYQVF	11	Unmodified	_THSIYVIYQVF_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2423400878906	3	457.243206	1368.70779	0.30902	0.0001413	-3.6378	-0.0016634	-3.3288	-0.0015221	457.2415420181703	71.608	0.65948	71.333	70.967	71.626	-0.27509					46	15	4	0	0	0	1.0592	1	8361	8361		22.562	0	1	1642500			78448	9003	54774	54866	86506	86506					0.03818214774400985
THSLAHLL	8	Unmodified	_THSLAHLL_					0	0	0		nc|ENSG00000150281|Q16619-2|CTF1;ENSG00000150281|ENST00000279804|CTF1	nc|ENSG00000150281|Q16619-2|CTF1	nc|ENSG00000150281|Q16619-2|CTF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.2319641113281	2	446.255977	890.497401	0.27876	0.0001244	-1.846	-0.0008238	-1.5673	-0.0006994	446.2555063715898	101.22	0.12267	101.21	101.15	101.27	-0.0054474					4	2	2	0	0	0	0.027866	1	12882	12882		26.796	0	1	27244			78449	6132	54775	54867	86507	86507					0.04777221962899603
THSLRNRRAL	10	Unmodified	_THSLRNRRAL_					0	0	0		ENSG00000214042|ENST00000239347|IFNA7	ENSG00000214042|ENST00000239347|IFNA7	ENSG00000214042|ENST00000239347|IFNA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	611.8046264648438	2	612.357619	1222.70069	-0.08897	-5.4482E-05	4.4717	0.0027383	4.3827	0.0026838	612.3601038524978	70.418	0.34534	70.418	70.355	70.7	0					10	7	2	0	0	0	0.03519	1	8538	8538		14.865	0	1	183290			78450	10539	54776	54868	86508	86508					0.09824339737224363
THSMRIGKA	9	Unmodified	_THSMRIGKA_					0	0	0			REV__ENST00000426558.1_1_1:161654637-161654841:-|nuORF	REV__ENST00000426558.1_1_1:161654637-161654841:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2677307128906	2	500.771468	999.528384	0.87233	0.00043684	3.5833	0.0017944	4.4556	0.0022312	500.77279161904937	106.48	0.30865	106.48	106.29	106.6	0					12	8	2	0	0	0	0.96322	1	13661	13661		27.882	2.4321	1	125630	+		78451	32275	54777	54869	86509	86509					0.02860052005507896
THSPIVPAS	9	Unmodified	_THSPIVPAS_					0	0	0		ENST00000530149.1_1_11:212820-213114:+|nuORF	ENST00000530149.1_1_11:212820-213114:+|nuORF	ENST00000530149.1_1_11:212820-213114:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7448425292969	2	454.745442	907.476331	0.47062	0.00021401	-1.899	-0.00086356	-1.4284	-0.00064954	454.74449165346823	101.24	1.4761	101.24	100.76	102.24	-0.0054474					99	33	4	0	0	0	0.92825	1	12852	12852		30.504	6.3009	1	3938500			78452	16224	54778	54870	86510	86510					0.018892118633857535
THSPVDGYI	9	Unmodified	_THSPVDGYI_					0	0	0		nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000119283|ENST00000366653|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7399597167969	2	494.740357	987.46616	-0.062591	-3.0966E-05	-0.036621	-1.8118E-05	-0.099212	-4.9084E-05	494.74021502667273	53.635	1.7588	53.39	52.975	54.733	-0.2453					117	51	4	0	0	0	0.29104	1	5665	5665		76.847	15.875	1	6426300			78453	3725	54779	54871	86511	86511					-0.028073958618506367
THSRFADGF	9	Unmodified	_THSRFADGF_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF;REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	REV__ENST00000520464.1_1_5:172507634-172535847:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.79296875	2	519.243598	1036.47264	-0.48747	-0.00025311	-4.4468	-0.002309	-4.9342	-0.0025621	519.2417227702463	56.277	1.1381	56.121	55.293	56.431	-0.15601					34	30	2	0	0	0	0.024506	1	6119	6119		38.806	9.6566	1	217020	+		78454	25757;34293	54780	54872	86512	86512					-0.04413457910482066
THSRKKRRR	9	Unmodified	_THSRKKRRR_					0	0	0		ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	ENSG00000155438|ENST00000285814|NIFK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	408.9223327636719	3	408.921794	1223.74355	0.53896	0.00022039	1.4015	0.0005731	1.9404	0.00079349	408.9219207611176	103.38	1.6685	103.26	102.75	104.42	-0.12724					74	41	4	0	0	0	0.97455	1	12858	12858		25.574	1.3422	1	776240			78455	6472	54781	54873	86513	86513					0.14063154585301163
THSSLLLAVLL	11	Unmodified	_THSSLLLAVLL_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.8590087890625	2	583.860806	1165.70706	-1.4127	-0.00082485	-1.8817	-0.0010987	-3.2945	-0.0019235	583.8595208920531	97.016	1.112	97.016	96.615	97.727	0					84	24	5	0	0	0	1.0119	1	12363	12363		34.173	1.3601	1	1406200			78456	4816	54782	54874	86514	86514					0.13083420125394696
THSSLLLAVLL	11	Unmodified	_THSSLLLAVLL_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.8590087890625	2	583.860806	1165.70706	0.21983	0.00012835	-3.4235	-0.0019988	-3.2037	-0.0018705	583.8586504901666	97.148	1.1572	97.024	96.617	97.774	-0.12368					90	25	5	0	0	0	0.81602	1	12041	12041		56.721	20.274	1	1344500			78457	4816	54782	54874	86515	86515					0.13083420125394696
THSSLLLAVLL	11	Unmodified	_THSSLLLAVLL_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.8593139648438	2	583.860806	1165.70706	-0.716	-0.00041804	-2.5967	-0.0015161	-3.3127	-0.0019342	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	1.0442	1	12032	12032		26.693	5.746	1	1429300			78458	4816	54782	54874	86516	86516					0.13083420125394696
THSVQQYIT	9	Unmodified	_THSVQQYIT_					0	0	0		ENST00000469543.5_1_10:17278370-17279385:+|nuORF	ENST00000469543.5_1_10:17278370-17279385:+|nuORF	ENST00000469543.5_1_10:17278370-17279385:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3095703125	2	538.772188	1075.52982	-0.0065878	-3.5493E-06	-0.6741	-0.00036319	-0.68069	-0.00036674	539.273665627921	18.682	0.29719	18.478	18.361	18.658	-0.20371					7	5	2	0	0	0	0.024457	1	327	327		29.15	3.5755	1	15894			78459	14908	54783	54875	86517	86517					-0.004920354247587966
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8692626953125	2	619.870028	1237.7255	-0.20812	-0.00012901	-0.94274	-0.00058438	-1.1509	-0.00071338	619.869248531336	92.303	2.2444	92.294	91.12	93.364	-0.0082855					173	53	4	0	0	0	1.0075	1	11761	11761		35.152	7.2698	1	1362300	+		78460	37190	54784	54876	86518	86518					0.11614974819940471
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8690185546875	2	619.870028	1237.7255	-0.48862	-0.00030288	-0.60882	-0.00037739	-1.0974	-0.00068027	619.8694795106298	92.383	2.3242	92.392	91.112	93.437	0.009407					190	55	4	0	0	0	1.0557	1	11694	11694		23.523	0.94304	1	1566400	+		78461	37190	54784	54876	86519	86519					0.11614974819940471
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.870028	1237.7255	-1.4765	-0.00091525	0.65775	0.00040772	-0.81877	-0.00050753	619.8702701735084	91.638	0.85271	91.489	90.933	91.785	-0.1487					60	19	4	0	0	0	1.0292	1	11241	11241		30.318	2.4355	1	637190	+		78462	37190	54784	54876	86520	86520					0.11614974819940471
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8693237304688	2	619.870028	1237.7255	-1.6623	-0.0010304	0.49102	0.00030437	-1.1713	-0.00072605	619.8701837716333	92.533	1.7768	92.39	91.661	93.437	-0.14356					149	41	4	0	0	0	0.90725	1	11396	11396		51.193	5.2204	1	1925500	+		78463	37190	54784	54876	86521	86521					0.11614974819940471
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.869140625	2	619.870028	1237.7255	-0.47108	-0.00029201	-0.44611	-0.00027653	-0.91719	-0.00056854	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.0075	1	11562	11562		35.152	3.6222	1	4765600	+		78464	37190	54784	54876	86522	86522					0.11614974819940471
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8690795898438	2	619.870028	1237.7255	0.12405	7.6895E-05	-1.3693	-0.00084877	-1.2452	-0.00077188	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0521	1	11469	11469		24.519	0	1	1596200	+		78465	37190	54784	54876	86523	86523					0.11614974819940471
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8692626953125	2	619.870028	1237.7255	-0.13269	-8.2249E-05	-0.82013	-0.00050837	-0.95281	-0.00059062	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	0.90725	2	11600	11588;11600		51.193	5.2407	1	4730400	+		78466	37190	54784	54876	86524;86525	86525					0.11614974819940471
THTGDGAVN	9	Unmodified	_THTGDGAVN_					0	0	0		ENST00000321250.12_1_8:29963396-29963519:+|nuORF	ENST00000321250.12_1_8:29963396-29963519:+|nuORF	ENST00000321250.12_1_8:29963396-29963519:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.21112060546875	2	436.198856	870.383159	0.65405	0.0002853	-3.9662	-0.00173	-3.3121	-0.0014447	436.19727885353484	99.153	1.4867	99.018	98.191	99.677	-0.13526					52	35	3	0	0	0	0.024457	1	12288	12288		29.15	16.943	1	69755			78467	12203	54785	54877	86526	86526					-0.05721712589854633
THTGLTLI	8	Unmodified	_THTGLTLI_					0	0	0			REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.26202392578125	2	428.25036	854.486168	-0.60221	-0.0002579	-3.9485	-0.0016909	-4.5507	-0.0019488	428.24871997752126	90.355	0.32809	90.2	90.062	90.39	-0.1552					13	7	2	0	0	0	0.027866	1	11035	11035		33.516	3.0119	1	294580	+		78468	37128	54786	54878	86527	86527					0.053103998687561216
THTGLTLI	8	Unmodified	_THTGLTLI_					0	0	0			REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.261962890625	2	428.25036	854.486168	-0.32147	-0.00013767	1.2889	0.00055199	0.96746	0.00041431	428.2509667439386	90.248	0.36763	90.123	90.049	90.416	-0.12512					12	8	2	0	0	0	0.027866	1	11073	11073		47.916	12.297	1	498240	+		78469	37128	54786	54878	86528	86528					0.053103998687561216
THTGPFSTPD	10	Unmodified	_THTGPFSTPD_					0	0	0			REV__ENST00000563777.1_1_16:30934354-30934567:-|nuORF	REV__ENST00000563777.1_1_16:30934354-30934567:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2416381835938	2	530.240721	1058.46689	-0.098714	-5.2342E-05	0.50668	0.00026866	0.40797	0.00021632	530.2408927350496	110.12	1.4041	110.13	109.79	111.2	0.0059204					101	50	3	0	0	0	1.089	1	13891	13891		34.173	3.6689	1	137900	+		78470	35234	54787	54879	86529	86529					-0.06000601212804213
THTGPYKL	8	Unmodified	_THTGPYKL_					0	0	0			REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|47|3|sense	REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|47|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.787353515625	2	458.747985	915.481417	-1.5668	-0.00071877	-1.5495	-0.00071082	-3.1163	-0.0014296	458.74875113516714	92.37	0.31902	92.227	92.006	92.325	-0.14356					12	7	2	0	0	0	0.027866	1	11311	11311		50.025	0	1	68305	+		78471	37613	54788	54880	86530	86530					0.020295157259852203
THTHTHSLSL	10	Unmodified	_THTHTHSLSL_					0	0	0			REV__ENST00000393386.6_1_7:121513186-121513453:+|nuORF	REV__ENST00000393386.6_1_7:121513186-121513453:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.288537	1132.56252	0.30252	0.00017162	3.8084	0.0021605	4.1109	0.0023321	567.2908870671932	89.186	0.62891	89.165	88.95	89.579	-0.021645					25	14	2	0	0	0	0.03519	1	11272	11272		40.778	6.6056	1	158110	+		78472	31641	54789	54881	86531	86531					0.0015417169809097686
THTHTKKTN	9	Unmodified	_THTHTKKTN_					0	0	0			REV__ENST00000560371.5_1_14:103372405-103372555:+|nuORF	REV__ENST00000560371.5_1_14:103372405-103372555:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2822265625	2	534.283254	1066.55196	0.14511	7.7529E-05	1.9432	0.0010382	2.0884	0.0011158	534.2843186877622	106.34	0.98719	106.18	105.77	106.76	-0.16132					86	45	3	0	0	0	0.85329	1	13224	13224		35.618	2.1027	1	230390	+		78473	35143	54790	54882	86532	86532					0.021341890436815447
THTKQHAIL	9	Unmodified	_THTKQHAIL_					0	0	0			REV__ZNF157|p.E215Q|1|0.26|ENSG00000147117|chrX:47412716-47412716|G/C|missense_variant	REV__ZNF157|p.E215Q|1|0.26|ENSG00000147117|chrX:47412716-47412716|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.797607421875	2	524.79854	1047.58253	-0.39329	-0.0002064	0.1189	6.24E-05	-0.27439	-0.000144	524.7984814766288	39.76	0.6772	39.76	39.459	40.137	0					45	18	3	0	0	0	0.62163	1	3448	3448		51.335	1.8939	1	2209200	+		78474	24528	54791	54883	86533	86533					0.06063967428713113
THTKQHVIL	9	Unmodified	_THTKQHVIL_					0	0	0			REV__ENSG00000147118|ENST00000376943|ZNF182	REV__ENSG00000147118|ENST00000376943|ZNF182	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2791748046875	2	538.81419	1075.61383	-1.1428	-0.00061577	0.53626	0.00028895	-0.60656	-0.00032682	538.8146386602169	35.941	0.20984	35.985	35.861	36.071	0.044056					8	5	2	0	0	0	0.024412	1	2761	2761		40.573	6.4001	1	25236	+		78475	24529	54792	54884	86534	86534					0.07904540462800469
THTNNIGM	8	Unmodified	_THTNNIGM_					0	0	0			REV__ENSG00000250719|ENST00000506599|P3R3URF	REV__ENSG00000250719|ENST00000506599|P3R3URF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.26678466796875	2	444.205627	886.396701	-0.33114	-0.0001471	0.62845	0.00027916	0.2973	0.00013206	444.20567274956005	26.526	0.46492	26.608	26.249	26.714	0.081293					18	10	2	0	0	0	0.027866	1	1273	1273		23.042	0	1	58964	+		78476	29029	54793	54885	86535	86535					-0.051041780822629335
THTNNIGM	8	Unmodified	_THTNNIGM_					0	0	0			REV__ENSG00000250719|ENST00000506599|P3R3URF	REV__ENSG00000250719|ENST00000506599|P3R3URF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	444.205627	886.396701	-0.21806	-9.6865E-05	0.29006	0.00012885	0.072	3.1983E-05	444.205671118445	26.785	0.45639	26.763	26.529	26.985	-0.021574	0.077705	-6.2298E-05	NaN	23.042	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97458	+		78477	29029	54793	54885							-0.051041780822629335
THTQKNSII	9	Unmodified	_THTQKNSII_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.2589111328125	2	521.288005	1040.56146	-0.72341	-0.00037711	-3.6054	-0.0018795	-4.3289	-0.0022566	521.2867156171893	85.113	0.28821	85.139	84.871	85.159	0.025536					8	6	2	0	0	0	0.024319	1	10589	10589		56.721	14.325	1	70016	+		78478	36591	54794	54886	86536	86536					0.042799573291858906
THTVYLSE	8	Unmodified	_THTVYLSE_					0	0	0		ENST00000486840.1_1_7:6864046-6864211:-|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF	ENST00000486840.1_1_7:6864046-6864211:-|nuORF	ENST00000486840.1_1_7:6864046-6864211:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.23455810546875	2	475.234907	948.455261	0.53249	0.00025306	-1.4864	-0.00070639	-0.95392	-0.00045334	475.23419575761636	105.08	0.61923	105.08	104.78	105.4	0.00096893					33	19	2	0	0	0	1.0338	1	13450	13450		31.955	1.4512	1	296060			78479	14766	54795	54887	86537	86537					-0.021027982361374598
THVAMRGN	8	Unmodified	_THVAMRGN_					0	0	0		ENSG00000168778|ENST00000303372|TCTN2;nc|ENSG00000168778|Q96GX1-2|TCTN2;ENST00000543998.1_1_12:124181644-124189091:+|nuORF	ENSG00000168778|ENST00000303372|TCTN2	ENSG00000168778|ENST00000303372|TCTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.7646789550781	2	443.221611	884.42867	-0.14885	-6.5975E-05	1.2909	0.00057214	1.142	0.00050617	443.2223018721002	92.002	0.32532	91.994	91.795	92.121	-0.0082932					10	7	2	0	0	0	0.027866	1	11641	11641		11.511	0	1	137290			78480	7861	54796	54888	86538	86538					-0.01816765608452897
THVFMMIY	8	Unmodified	_THVFMMIY_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2498168945312	2	521.248449	1040.48234	-0.090205	-4.7019E-05	2.5529	0.0013307	2.4627	0.0012837	521.249717703201	72.001	1.2814	71.726	71.433	72.715	-0.27509					52	30	2	0	0	0	0.37803	1	8421	8421		100.27	23.499	1	4936600	+		78481	20777	54797	54889	86539	86539					-0.036277292209433654
THVHYHKV	8	Unmodified	_THVHYHKV_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.78851318359375	2	510.772326	1019.5301	0.2883	0.00014726	2.3793	0.0012153	2.6676	0.0013625	510.77365730821356	85.685	0.42154	85.49	85.386	85.808	-0.19508					14	9	2	0	0	0	0.027866	1	10417	10417		25.45	0	1	361960	+		78482	21276	54798	54890	86540	86540					0.021114290857553897
THVLFHRKL	9	Unmodified	_THVLFHRKL_					0	0	0			REV__ENSG00000179059|ENST00000326866|ZFP42	REV__ENSG00000179059|ENST00000326866|ZFP42	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8432006835938	2	575.845825	1149.6771	-0.5107	-0.00029409	-4.4919	-0.0025866	-5.0026	-0.0028807	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.80658	1	10884	10884		38.806	0.99462	1	2085600	+		78483	27234	54799	54891	86541	86541					0.1082452597070187
THVLVAAVCN	10	Carbamidomethyl (C)	_THVLVAAVC(Carbamidomethyl (C))N_	THVLVAAVC(1)N		THVLVAAVC(59)N		0	1	0			REV__ENST00000222690.10_1_7:44869386-44869509:-|nuORF	REV__ENST00000222690.10_1_7:44869386-44869509:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.28125	2	542.284408	1082.55426	-0.79107	-0.00042899	-2.6163	-0.0014188	-3.4074	-0.0018478	542.2829168601154	52.206	1.2024	52.022	51.634	52.836	-0.18405					66	28	4	0	0	0	0.82838	1	5406	5406		58.782	10.822	1	5207400	+		78484	29360	54800	54892	86542	86542	388				0.016289014570929794
THVPPHRPPSA	11	Unmodified	_THVPPHRPPSA_					0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	597.8560180664062	2	598.320171	1194.62579	-0.53689	-0.00032123	1.4082	0.00084253	0.87128	0.0005213	598.821412170445	93.014	0.3455	92.892	92.67	93.015	-0.12215					17	7	3	0	0	0	0.024765	1	11445	11445		58.23	20.418	1	47783			78485	37919	54801	54893	86543	86543					0.03626157206008429
THVPRLIPL	9	Unmodified	_THVPRLIPL_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-2|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.3034057617188	2	523.329476	1044.6444	-0.39608	-0.00020728	-0.22215	-0.00011626	-0.61823	-0.00032354	523.3290947364992	87.765	0.45673	87.586	87.238	87.695	-0.17874					13	10	2	0	0	0	0.024374	1	10675	10675		40.778	19.831	1	57948			78486	18447	54802	54894	86544	86544					0.12386318847870825
THVQIQNL	8	Unmodified	_THVQIQNL_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.3221130371094	2	476.764166	951.513779	-0.3757	-0.00017912	-3.0765	-0.0014668	-3.4522	-0.0016459	476.7625660062702	66.681	0.68496	66.436	65.812	66.496	-0.24517					29	18	2	0	0	0	0.027866	1	7619	7619		12.959	0.75233	1	384980	+		78487	27924	54803	54895	86545	86545					0.036083031289877
THVRQHKAL	9	Unmodified	_THVRQHKAL_					0	0	0			REV__ENSG00000180257|ENST00000444460|ZNF816	REV__ENSG00000180257|ENST00000444460|ZNF816	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.31640625	2	545.317432	1088.62031	-0.47781	-0.00026056	-0.87443	-0.00047684	-1.3522	-0.0007374	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	0.85329	2	10935	10935;11055		35.618	2.8059	1	17400000	+		78488	27324	54804	54896	86546;86547	86546					0.07954478414194455
THVRQHQIH	9	Unmodified	_THVRQHQIH_					0	0	0			REV__nc|ENSG00000290687|P0CG31|ZNF286B	REV__nc|ENSG00000290687|P0CG31|ZNF286B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.3096313476562	2	578.310138	1154.60572	-1.753	-0.0010138	2.0389	0.0011791	0.28593	0.00016536	578.3112348551637	109.57	0.4404	109.43	109.25	109.69	-0.13821					35	21	2	0	0	0	0.96322	1	13467	13467		27.882	0	1	1541100	+		78489	37231	54805	54897	86548	86548					0.03460406266049176
THVRRHPLPLQ	11	Unmodified	_THVRRHPLPLQ_					0	0	0			REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|80|3|anti-sense	REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|80|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.93304443359375	3	451.933588	1352.77894	0.5373	0.00024282	-2.5895	-0.0011703	-2.0522	-0.00092747	451.9323503655758	98.697	1.9732	98.697	97.898	99.871	0					179	45	5	0	0	0	1.044	1	12675	12675		26.75	0.68632	1	1528000	+		78490	36301	54806	54898	86549	86549					0.11665772322453449
THVTDMDFEDD	11	Unmodified	_THVTDMDFEDD_					0	0	0		nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5|BTBD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.8931579589844	3	442.171447	1323.49251	-0.37844	-0.00016734	-1.5799	-0.00069857	-1.9583	-0.00086591	442.1707260878104	34.7	0.68723	34.493	34.242	34.93	-0.20696					49	16	4	0	0	0	0.024816	1	2634	2634		8.0344	0	1	881490			78491	18612	54807	54899	86550	86550					-0.15629539543351711
THVTKTVKGG	10	Unmodified	_THVTKTVKGG_					0	0	0		ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1	ENSG00000088367|ENST00000338074|EPB41L1	ENSG00000088367|ENST00000338074|EPB41L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2979125976562	2	514.298373	1026.58219	-0.26021	-0.00013383	-0.61526	-0.00031643	-0.87547	-0.00045025	514.2978037910609	95.323	1.1741	95.171	94.667	95.842	-0.15186					65	26	4	0	0	0	1.1266	1	11737	11737		29.17	0.020503	1	1560600			78492	1869	54808	54900	86551	86551					0.0699654770885445
THVTNVEKHI	10	Unmodified	_THVTNVEKHI_					0	0	0		ENST00000478296.5_1_3:75787041-75787971:-|nuORF	ENST00000478296.5_1_3:75787041-75787971:-|nuORF	ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3427734375	2	589.319837	1176.62512	-2.1411	-0.0012618	-2.9639	-0.0017467	-5.105	-0.0030085	589.3177960116473	92.449	0.16038	92.306	92.246	92.406	-0.14356					5	3	2	0	0	0	0.03519	1	11366	11366		39.253	16.673	1	48048			78493	15140	54809	54901	86552	86552					0.04387317766304477
THVTQHTTL	9	Unmodified	_THVTQHTTL_					0	0	0			REV__ENSG00000198633|ENST00000433050|ZNF534	REV__ENSG00000198633|ENST00000433050|ZNF534	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.79248046875	2	519.272355	1036.53016	0.32493	0.00016873	4.276	0.0022204	4.6009	0.0023891	519.2749395000418	55.568	0.9136	55.568	54.944	55.858	0					42	25	3	0	0	0	0.024506	1	6129	6129		30.504	12.179	1	298470	+		78494	28442	54810	54902	86553	86553					0.013353842950891703
THWASLSL	8	Unmodified	_THWASLSL_					0	0	0		ENST00000461108.5_1_3:52003444-52003858:-|nuORF	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7666320800781	2	457.74016	913.465767	0.22085	0.00010109	-1.1212	-0.0005132	-0.90032	-0.00041211	457.73968636059135	39.133	0.82934	39.133	38.797	39.627	0					45	23	3	0	0	0	0.027866	1	3351	3351		12.207	0	1	563720			78495	14675	54811	54903	86554	86554					0.005572292089482289
THWATFGM	8	Unmodified	_THWATFGM_					0	0	0			REV__ENST00000547318.5_1_12:51453294-51453396:+|nuORF	REV__ENST00000547318.5_1_12:51453294-51453396:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.7848205566406	2	475.713088	949.411622	-0.69937	-0.0003327	3.2522	0.0015471	2.5528	0.0012144	475.71463398927915	34.404	0.48	34.228	34.05	34.53	-0.17557					30	11	4	0	0	0	0.027866	1	2531	2531		12.959	0	1	356620	+		78496	34865	54812	54904	86555	86555					-0.06510686214255657
THWLLKLV	8	Unmodified	_THWLLKLV_					0	0	0		IDUA|p.E95K|1|0.29|ENSG00000127415|chr4:987933-987933|G/A|missense_variant	IDUA|p.E95K|1|0.29|ENSG00000127415|chr4:987933-987933|G/A|missense_variant	IDUA|p.E95K|1|0.29|ENSG00000127415|chr4:987933-987933|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.3125305175781	2	505.313295	1008.61204	-1.3072	-0.00066053	1.2706	0.00064205	-0.036569	-1.8479E-05	505.3138544419851	21.113	0.69097	20.9	20.624	21.315	-0.2128					31	13	3	0	0	0	1.0574	1	613	613		25.45	1.2474	1	258980			78497	17758	54813	54905	86556	86556					0.10807531444856977
THYYIVNL	8	Unmodified	_THYYIVNL_					0	0	0		nc|ENSG00000120907|P35348-5|ADRA1A;ADRA1A|p.S296Ffs*19|1|0.08|ENSG00000120907|chr8:26770663-26770664|-/CAGTCTTCCAA|frameshift_variant;nc|ENSG00000120907|P35348-7|ADRA1A;nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A;nc|ENSG00000120907|P35348-9|ADRA1A;nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A	nc|ENSG00000120907|P35348-5|ADRA1A	nc|ENSG00000120907|P35348-5|ADRA1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7893371582031	2	511.768917	1021.52328	0.5437	0.00027825	-0.93218	-0.00047706	-0.38848	-0.00019881	511.76844241313364	86.139	0.95345	85.996	85.541	86.495	-0.14217					28	17	2	0	0	0	0.027866	1	10407	10407		8.2313	0	1	743990			78498	39	54814	54906	86557	86557					0.013380714145228012
TIAARNTE	8	Unmodified	_TIAARNTE_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.24310302734375	2	438.232699	874.450845	-0.39416	-0.00017273	0.20651	9.0498E-05	-0.18765	-8.2235E-05	438.2328458326596	30.066	0.98941	30.075	29.757	30.746	0.0086708					67	23	5	0	0	0	0.027866	1	1919	1919		20.947	0	1	1170200			78499	16521	54815	54907	86558	86558					0.008597373409429565
TIAARNTE	8	Unmodified	_TIAARNTE_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	438.232699	874.450845	-1.0059	-0.00044082	1.241	0.00054383	0.23505	0.00010301	438.2331355205179	30.134	0.86051	30.134	29.773	30.634	0	0.13275	0.00024268	NaN	20.947	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1030400			78500	16521	54815	54907							0.008597373409429565
TIAARNTE	8	Unmodified	_TIAARNTE_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	438.232699	874.450845	-0.65093	-0.00028526	0.75293	0.00032996	0.102	4.4698E-05	438.23299452060843	29.716	0.89072	29.794	29.45	30.341	0.078344	-0.20665	-0.00018506	NaN	20.947	71	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106200			78501	16521	54815	54907							0.008597373409429565
TIADFTLKS	9	Unmodified	_TIADFTLKS_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.28924560546875	2	498.274032	994.533512	-0.58622	-0.0002921	1.7548	0.00087435	1.1685	0.00058225	498.27402493078034	50.863	0.36155	50.95	50.716	51.077	0.087006					15	9	2	0	0	0	0.024374	1	5268	5268		19.104	0	1	116710	+		78502	28205	54816	54908	86559	86559					0.03602634349101663
TIAKKIGIR	9	Unmodified	_TIAKKIGIR_					0	0	0			REV__nc|ENSG00000085563|P08183-2|ABCB1	REV__nc|ENSG00000085563|P08183-2|ABCB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7691650390625	2	500.337301	998.66005	-0.37158	-0.00018592	-3.6671	-0.0018348	-4.0387	-0.0020207	500.83602556974165	39.376	0.18281	39.15	39.022	39.205	-0.2257					7	4	2	0	0	0	0.024506	1	3297	3297		38.806	3.1879	1	37472	+		78503	20754	54817	54909	86560	86560					0.1606660536489244
TIAKLTRE	8	Unmodified	_TIAKLTRE_					0	0	0		ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	467.2633361816406	2	466.282192	930.549831	-0.44113	-0.00020569	-0.54623	-0.0002547	-0.98737	-0.00046039	466.28184452647207	49.86	0.82561	49.86	49.62	50.445	0					42	23	2	0	0	0	0.027866	1	5277	5277		27.882	0	1	1186600			78504	2957	54818	54910	86561	86561					0.08177760305829906
TIAKLTRE	8	Unmodified	_TIAKLTRE_					0	0	0		ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.282192	930.549831	0.1789	8.3418E-05	-1.4821	-0.00069108	-1.3032	-0.00060766	466.2809911039514	50.079	0.55169	49.928	49.671	50.223	-0.1512	0.047229	-0.00050987	NaN	19.997	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	894660			78505	2957	54818	54910							0.08177760305829906
TIAKLTRE	8	Unmodified	_TIAKLTRE_					0	0	0		ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.282192	930.549831	0.27502	0.00012824	-2.3998	-0.001119	-2.1248	-0.00099075	466.28090121071773	49.779	0.58871	49.854	49.615	50.204	0.074192	-0.026801	-0.0013657	NaN	19.997	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987850			78506	2957	54818	54910							0.08177760305829906
TIAKPTTH	8	Unmodified	_TIAKPTTH_					0	0	0		nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1	nc|ENSG00000079387|Q9P0U3-2|SENP1	nc|ENSG00000079387|Q9P0U3-2|SENP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.2877502441406	2	434.747985	867.481417	-0.56937	-0.00024753	-1.9037	-0.00082761	-2.473	-0.0010751	434.74759213148343	26.059	0.24962	25.823	25.593	25.843	-0.23603					6	5	2	0	0	0	0.027866	1	1300	1300		42.396	0	1	27755			78507	1662	54819	54911	86562	86562					0.0423751572599258
TIAKPTTH	8	Unmodified	_TIAKPTTH_					0	0	0		nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1	nc|ENSG00000079387|Q9P0U3-2|SENP1	nc|ENSG00000079387|Q9P0U3-2|SENP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	434.747985	867.481417	-0.15909	-6.9162E-05	0.44553	0.00019369	0.28645	0.00012453	434.74811894262166	26.368	0.78992	26.2	26.019	26.809	-0.16816	0.18834	0.00016557	NaN	34.173	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245150			78508	1662	54819	54911							0.0423751572599258
TIALPAVAL	9	Unmodified	_TIALPAVAL_					0	0	0			REV__nc|ENSG00000164418|Q13002-3|GRIK2	REV__nc|ENSG00000164418|Q13002-3|GRIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7797546386719	2	434.778754	867.542954	-0.72648	-0.00031586	3.6936	0.0016059	2.9671	0.0012901	434.7802124734377	48.558	1.352	48.282	47.775	49.127	-0.27598					129	36	4	0	0	0	0.75282	1	4804	4804		42.474	1.9018	1	3466800	+		78509	25753	54820	54912	86563	86563					0.10388447425270897
TIAPRKTTP	9	Unmodified	_TIAPRKTTP_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2698059082031	2	492.795466	983.57638	-0.35429	-0.00017459	-0.31816	-0.00015679	-0.67246	-0.00033138	492.7950969752067	45.357	1.1179	45.146	44.436	45.554	-0.21109					62	30	3	0	0	0	0.024539	1	4177	4177		27.882	0	1	820850	+		78510	24522	54821	54913	86564	86564					0.08393449197160407
TIAPRKTTP	9	Unmodified	_TIAPRKTTP_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	492.795466	983.57638	-0.26946	-0.00013279	-0.49425	-0.00024357	-0.76371	-0.00037635	492.7951259774418	45.138	0.96111	45.138	44.553	45.514	0	-0.012118	-0.00029566	NaN	20.947	41	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1622200	+		78511	24522	54821	54913							0.08393449197160407
TIAPRKTTP	9	Unmodified	_TIAPRKTTP_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	492.795466	983.57638	-0.60679	-0.00029902	0.071128	3.5052E-05	-0.53566	-0.00026397	492.79538998714077	45.279	0.92525	45.13	44.557	45.483	-0.1488	-0.02	0.00026157	NaN	20.947	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1767300	+		78512	24522	54821	54913							0.08393449197160407
TIAPRKTTP	9	Unmodified	_TIAPRKTTP_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.795466	983.57638	-0.2915	-0.00014365	-0.051472	-2.5365E-05	-0.34297	-0.00016902	492.79519584097625	45.177	0.65217	45.221	44.894	45.546	0.04388	0.070308	0.00014074	NaN	20.947	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1644300	+		78513	24522	54821	54913							0.08393449197160407
TIAPRKTTP	9	Unmodified	_TIAPRKTTP_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.795466	983.57638	-1.0245	-0.00050485	0.39675	0.00019552	-0.62771	-0.00030933	492.7954464999773	45.234	0.78636	45.135	44.672	45.458	-0.099449	-0.015352	0.0005825	NaN	20.947	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920730	+		78514	24522	54821	54913							0.08393449197160407
TIAPRKTTP	9	Unmodified	_TIAPRKTTP_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.795466	983.57638	-0.075147	-3.7032E-05	-0.68547	-0.0003378	-0.76062	-0.00037483	492.7949575401574	45.384	1.0981	45.131	44.468	45.566	-0.25252	-0.01891	-0.00048413	NaN	20.947	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828810	+		78515	24522	54821	54913							0.08393449197160407
TIAQLVHAV	9	Unmodified	_TIAQLVHAV_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7879638671875	2	476.284734	950.554916	1.0773	0.0005131	-1.6143	-0.00076889	-0.53704	-0.00025578	476.2838359776142	59.643	0.48134	59.442	59.172	59.654	-0.20016					29	12	3	0	0	0	0.024381	1	6818	6818		45.952	3.4775	1	888100			78516	6791	54822	54914	86565	86565					0.07766064168470166
TIASRAFAAM	10	Unmodified	_TIASRAFAAM_					0	0	0			REV__ENST00000602546.5_1_X:73164188-73164462:+|nuORF	REV__ENST00000602546.5_1_X:73164188-73164462:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3236694335938	2	519.773677	1037.5328	-1.0823	-0.00056255	1.3472	0.00070026	0.26494	0.00013771	519.774214917501	51.835	0.76603	51.925	51.717	52.483	0.089085					32	19	2	0	0	0	0.03519	1	5432	5432		35.618	11.416	1	187300	+		78517	35879	54823	54915	86566	86566					0.015535164283846825
TIATPATLH	9	Unmodified	_TIATPATLH_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.23211669921875	2	462.761092	923.507631	0.48762	0.00022565	0.03308	1.5308E-05	0.5207	0.00024096	462.76187418247633	28.474	0.32757	28.555	28.329	28.657	0.080811					10	7	2	0	0	0	0.024381	1	1580	1580		29.15	6.1071	1	41450			78518	18210	54824	54916	86567	86567					0.04281784897466423
TIATPATLH	9	Unmodified	_TIATPATLH_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.761092	923.507631	-1.2591	-0.00058268	1.5145	0.00070087	0.25542	0.0001182	462.7614983016063	28.99	0.43281	28.745	28.534	28.967	-0.24524	0.030088	0.00088068	NaN	21.96	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132890			78519	18210	54824	54916							0.04281784897466423
TIATPATLH	9	Unmodified	_TIATPATLH_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.761092	923.507631	-0.45249	-0.00020939	0.27369	0.00012665	-0.1788	-8.274E-05	462.76081749287107	28.924	0.51747	28.755	28.467	28.985	-0.16897	0.040277	-0.00026776	NaN	21.96	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145140			78520	18210	54824	54916							0.04281784897466423
TIATPATLH	9	Unmodified	_TIATPATLH_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.761092	923.507631	-0.40142	-0.00018576	0.086819	4.0176E-05	-0.3146	-0.00014559	462.7609604340464	28.954	0.42775	28.805	28.572	29	-0.14952	0.089716	-0.00044072	NaN	21.96	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198910			78521	18210	54824	54916							0.04281784897466423
TIAVIVQIN	9	Unmodified	_TIAVIVQIN_					0	0	0		ENSG00000172289|ENST00000307552|OR10V1	ENSG00000172289|ENST00000307552|OR10V1	ENSG00000172289|ENST00000307552|OR10V1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.26611328125	2	485.800217	969.585882	0.03518	1.7091E-05	0.33643	0.00016344	0.37161	0.00018053	485.799940085351	67.945	0.70836	67.657	67.388	68.096	-0.28834					23	17	2	0	0	0	0.02435	1	8156	8156		51.335	22.186	1	439560			78522	8259	54825	54917	86568	86568					0.09987217482694177
TICASWNQQD	10	Unmodified	_TICASWNQQD_					0	0	0			REV__ENST00000356284.6_2_6:169068153-169068438:+|nuORF	REV__ENST00000356284.6_2_6:169068153-169068438:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.7958984375	2	583.250763	1164.48697	-0.079703	-4.6487E-05	-3.2399	-0.0018897	-3.3196	-0.0019362	583.2486994226698	68.306	0.60389	68.076	67.794	68.398	-0.23048					25	14	2	0	0	0	0.03519	1	7909	7909		39.253	17.293	1	235360	+		78523	30790	54826	54918	86569	86569					-0.08869173544508158
TICMQEVVH	9	Unmodified	_TICMQEVVH_					0	0	0			REV__PRNP|p.R208H|1|0.17|ENSG00000171867|chr20:4699843-4699843|G/A|missense_variant	REV__PRNP|p.R208H|1|0.17|ENSG00000171867|chr20:4699843-4699843|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2825317382812	2	530.25172	1058.48889	-1.3735	-0.00072828	2.2834	0.0012108	0.90994	0.0004825	530.2540599352014	39.658	0.1707	39.546	39.432	39.603	-0.11223					6	4	2	0	0	0	0.024457	1	3421	3421		29.15	0	1	58975	+		78524	37408	54827	54919	86570	86570					-0.03801836060233654
TIDGWVLF	8	Unmodified	_TIDGWVLF_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|69	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|69	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|69	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.26025390625	2	475.752736	949.490919	1.2053	0.00057345	-1.282	-0.00060994	-0.076704	-3.6492E-05	475.750720965575	40.604	0.67211	40.485	40.201	40.873	-0.11932					56	18	5	0	0	0	0.027866	1	3565	3565		19.36	0	1	1487700			78525	424	54828	54920	86571	86571					0.014152840115116305
TIDGYFYSL	9	Unmodified	_TIDGYFYSL_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7925415039062	2	539.758215	1077.50188	-1.0188	-0.00054991	1.177	0.00063528	0.15817	8.5375E-05	539.758799880822	77.781	0.90708	77.797	77.449	78.356	0.015907					55	21	4	0	0	0	0.024506	1	9575	9575		16.473	0	1	1378600			78526	1711	54829	54921	86572	86572					-0.03377358404873121
TIDPELVNV	9	Unmodified	_TIDPELVNV_					0	0	0			REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7694396972656	2	500.27149	998.528426	-0.72105	-0.00036072	-3.6228	-0.0018124	-4.3438	-0.0021731	500.770232839716	39.219	1.6566	39.054	38.659	40.316	-0.16459					129	44	6	0	0	0	0.53979	1	3299	3299		56.721	8.8055	1	26558000	+		78527	28016	54830	54922	86573	86573					0.02910330486474777
TIDPELVNV	9	Unmodified	_TIDPELVNV_					0	0	0			REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	REV__nc|ENSG00000188167|Q6ZT21-2|TMPPE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7686767578125	2	500.27149	998.528426	-0.37618	-0.00018819	-4.0502	-0.0020262	-4.4264	-0.0022144	500.7700404947614	39.334	1.6824	39.108	38.736	40.419	-0.2257					126	44	6	0	0	0	0.4752	1	3285	3285		60.972	18.497	1	27495000	+		78528	28016	54830	54922	86574	86574					0.02910330486474777
TIDPLLAQE	9	Unmodified	_TIDPLLAQE_					0	0	0			REV__ENSG00000171045|ENST00000524325|TSNARE1	REV__ENSG00000171045|ENST00000524325|TSNARE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7691650390625	2	500.27149	998.528426	-0.37618	-0.00018819	-4.0502	-0.0020262	-4.4264	-0.0022144	500.7700404947614	39.334	1.6824	39.108	38.736	40.419	-0.2257					126	44	6	0	0	0	0.62163	2	3297	3297;3309		51.335	7.0454	1	27495000	+		78529	26533	54831	54923	86575;86576	86575					0.029103304864634083
TIDQLYLEY	9	Unmodified	_TIDQLYLEY_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.2896728515625	2	579.289879	1156.56521	0.40647	0.00023546	-0.6531	-0.00037834	-0.24664	-0.00014287	579.2894549393473	79.189	1.9953	78.937	78.56	80.555	-0.25159					113	47	4	0	0	0	0.013065	4	9459	9434;9447;9459;9470		171.53	59.884	1	5594900			78530	18075	54832	54924	86577;86578;86579;86580	86579					-0.006814176876332567
TIDQLYLEY	9	Unmodified	_TIDQLYLEY_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.2902221679688	2	579.289879	1156.56521	-0.37525	-0.00021738	0.20745	0.00012018	-0.1678	-9.7203E-05	579.2899219562338	79.156	1.7122	78.937	78.532	80.244	-0.21923					114	40	5	0	0	0	0.015752	5	9454	9443;9454;9466;9478;9490		158.07	46.426	1	5806000			78531	18075	54832	54924	86581;86582;86583;86584;86585	86582					-0.006814176876332567
TIDQLYLEY	9	Unmodified	_TIDQLYLEY_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENST00000556343.1_1_14:69350028-69351010:-|nuORF	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.2896728515625	2	579.289879	1156.56521	-0.26979	-0.00015629	-0.0209	-1.2107E-05	-0.29069	-0.00016839	579.2897905989823	79.076	1.3866	78.925	78.563	79.949	-0.15051					99	32	4	0	0	0	0.015752	6	9428	9417;9428;9440;9452;9464;9477		158.07	49.34	1	5500100			78532	18075	54832	54924	86586;86587;86588;86589;86590;86591	86587					-0.006814176876332567
TIDQVGMVSLY	11	Unmodified	_TIDQVGMVSLY_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	613.2899780273438	2	613.310289	1224.60602	-1.0398	-0.0006377	4.3253	0.0026528	3.2856	0.0020151	613.3132861877012	61.082	0.42812	60.829	60.584	61.012	-0.25373					22	10	4	0	0	0	0.023407	1	6780	6780		93.143	5.4468	1	450190			78533	6257	54833	54925	86592	86592					0.002706003603634599
TIDVFQQP	8	Unmodified	_TIDVFQQP_					0	0	0		ENSG00000177688|ENST00000326669|SUMO4	ENSG00000177688|ENST00000326669|SUMO4	ENSG00000177688|ENST00000326669|SUMO4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2840881347656	2	474.245275	946.475997	0.84435	0.00040043	-1.1612	-0.00055072	-0.3169	-0.00015029	474.24449544765116	53.603	0.70576	53.603	53.337	54.043	0					43	19	3	0	0	0	0.027866	1	5818	5818		18.324	0	1	1366400			78534	8764	54834	54926	86593	86593					0.0006179214352641793
TIDVLKISP	9	Unmodified	_TIDVLKISP_					0	0	0			REV__ENST00000409528.5_2_2:103431452-103431533:+|nuORF	REV__ENST00000409528.5_2_2:103431452-103431533:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2815246582031	2	493.30005	984.585547	-0.099304	-4.8987E-05	-0.0050577	-2.4949E-06	-0.10436	-5.1482E-05	493.2997099687449	24.885	0.22262	24.71	24.554	24.777	-0.17484					6	4	2	0	0	0	0.024523	1	1129	1129		21.96	3.6355	1	31335	+		78535	31963	54835	54927	86594	86594					0.09263797762855575
TIDVLKISP	9	Unmodified	_TIDVLKISP_					0	0	0			REV__ENST00000409528.5_2_2:103431452-103431533:+|nuORF	REV__ENST00000409528.5_2_2:103431452-103431533:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.30005	984.585547	-0.84277	-0.00041574	1.4484	0.00071452	0.60568	0.00029878	493.3004872911106	25.118	0.26708	24.891	24.708	24.975	-0.22683	0.090525	0.00044453	NaN	27.882	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23147	+		78536	31963	54835	54927							0.09263797762855575
TIDVSSDRR	9	Unmodified	_TIDVSSDRR_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2846069335938	2	524.772719	1047.53089	-0.38276	-0.00020086	-2.7971	-0.0014679	-3.1799	-0.0016687	524.7705976532511	55.145	0.66203	54.995	54.711	55.373	-0.15036					41	18	3	0	0	0	0.024477	1	6107	6107		35.618	7.736	1	644750			78537	4574	54836	54928	86595	86595					0.009021789441476358
TIDYRKGDS	9	Unmodified	_TIDYRKGDS_					0	0	0		RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant;nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	RBM15|p.A858Cfs*11|1|0.31|ENSG00000162775|chr1:110341975-110341976|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2393188476562	2	527.76182	1053.50909	0.62733	0.00033108	1.2698	0.00067017	1.8972	0.0010013	527.7622852003283	63.767	0.65067	63.767	63.447	64.097	0					26	17	2	0	0	0	0.024457	1	7425	7425		15.642	0	1	218570			78538	6990	54837	54929	86596	86596					-0.015526258044246788
TIEALRPYQ	9	Unmodified	_TIEALRPYQ_					0	0	0		ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.833984375	2	545.798206	1089.58186	-0.78359	-0.00042768	0.98423	0.00053719	0.20064	0.00010951	545.7986260652767	48.832	0.21685	48.65	48.521	48.738	-0.18206					6	5	2	0	0	0	0.024477	1	4876	4876		35.618	0	1	101500			78539	2039	54838	54930	86597	86597					0.04065127988974382
TIEDFNKFCSF	11	Unmodified	_TIEDFNKFCSF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-3|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7610168457031	3	450.872673	1349.59619	0.63193	0.00028492	-1.7871	-0.00080575	-1.1552	-0.00052083	450.8718632059356	22.19	0.51142	22.001	21.769	22.281	-0.18894					20	10	3	0	0	0	0.024735	1	775	775		27.644	0	1	27739			78540	1069	54839	54931	86598	86598					-0.06462587645023632
TIEDLDEPIR	10	Unmodified	_TIEDLDEPIR_					0	0	0			REV__ENSG00000159256|ENST00000400485|MORC3	REV__ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.87567138671875	3	400.875071	1199.60338	0.72253	0.00028964	0.10011	4.013E-05	0.82263	0.00032977	400.87530369780524	37.537	0.79802	37.344	36.927	37.725	-0.193					53	20	4	0	0	0	1.0639	1	3025	3025		37.508	0.98027	1	2133100	+		78541	25243	54840	54932	86599	86599					0.011564682270318372
TIEDPALPKG	10	Unmodified	_TIEDPALPKG_					0	0	0		ENSG00000147316|ENST00000344683|MCPH1;nc|ENSG00000147316|Q8NEM0-3|MCPH1;nc|ENSG00000147316|Q8NEM0-2|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	ENSG00000147316|ENST00000344683|MCPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7842407226562	2	520.784764	1039.55498	-0.25442	-0.0001325	-1.0335	-0.00053821	-1.2879	-0.00067071	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	1.1286	1	13326	13326		25.574	0.12388	1	3782600			78542	5955	54841	54933	86600	86600					0.036780193777985914
TIEELRCVQ	9	Unmodified	_TIEELRCVQ_					0	0	0		ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENST00000527306.1_1_8:42752256-42852891:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.302001953125	2	545.781699	1089.54884	-0.70332	-0.00038386	0.34829	0.00019009	-0.35503	-0.00019377	545.7820544059764	64.794	0.59444	64.56	64.295	64.89	-0.2345					23	14	2	0	0	0	0.024381	1	7382	7382		21.96	0	1	471500			78543	7793	54842	54934	86601	86601					0.007651778746094351
TIEFHKVL	8	Unmodified	_TIEFHKVL_					0	0	0			REV__CON__Q0V8M9	REV__CON__Q0V8M9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.30572509765625	2	493.78711	985.559667	-0.21683	-0.00010707	-1.2917	-0.00063784	-1.5086	-0.00074491	493.78620495809605	60.136	1.2612	59.936	59.136	60.397	-0.20016					82	33	4	0	0	0	0.027866	1	6750	6750		53.351	0	1	2993000	+	+	78544	19565	54843	54935	86602	86602					0.06630948311226348
TIEFTQEEWQ	10	Unmodified	_TIEFTQEEWQ_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510;ENST00000472201.1_1_9:99525325-99525938:-|nuORF	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.274169921875	3	437.534825	1309.58265	0.54544	0.00023865	3.5642	0.0015595	4.1097	0.0017981	437.8703743505168	52.674	0.26429	52.766	52.638	52.902	0.091942					9	6	2	0	0	0	0.03519	1	5592	5592		32.751	20.818	1	80697			78545	1710	54844	54936	86603	86603					-0.05976122152605967
TIEGSRSTEI	10	Unmodified	_TIEGSRSTEI_					0	0	0			REV__ENSG00000196116|ENST00000355295|TDRD7	REV__ENSG00000196116|ENST00000355295|TDRD7	MSMS	OPSCC_39_ClassI_Rep-2	2	546.780029296875	2	546.78021	1091.54587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.167	1	31.178	30.678	31.678	0.011797								0	0	0	0.50561	1	2044	2044		67.494	1.0644	1		+		78546	28127	54845	54937	86604	86604					0.0037562602146863355
TIEKFTLVE	9	Unmodified	_TIEKFTLVE_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2769165039062	2	540.30279	1078.59103	-1.017	-0.00054951	-1.9134	-0.0010338	-2.9305	-0.0015834	540.3008204245298	60.725	0.78803	60.725	60.546	61.334	0					33	20	3	0	0	0	0.024374	1	7043	7043		40.778	1.7567	1	317770	+		78547	20300	54846	54938	86605	86605					0.05487476554662862
TIEKQGRPS	9	Unmodified	_TIEKQGRPS_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;RAPGEF1|p.K269Sfs*38|1|0.3|ENSG00000107263|chr9:131629140-131629140|G/-|frameshift_variant	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7404479980469	2	508.28018	1014.54581	-1.8226	-0.0009264	-0.81333	-0.0004134	-2.6359	-0.0013398	508.7806309897531	51.957	0.3643	51.688	51.361	51.725	-0.26903					10	9	2	0	0	0	0.024367	1	5310	5310		36.447	7.2972	1	162170			78548	2834	54847	54939	86606	86606					0.039116708121468946
TIEKVTLVE	9	Unmodified	_TIEKVTLVE_					0	0	0			REV__nc|ENSG00000292357|P15509-8|CSF2RA	REV__nc|ENSG00000292357|P15509-8|CSF2RA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3080444335938	2	516.30279	1030.59103	-1.0827	-0.00055899	0.3352	0.00017307	-0.74748	-0.00038593	516.3031231308986	62.721	0.35988	62.721	62.409	62.769	0					13	8	2	0	0	0	0.024021	1	7314	7314		68.787	2.3575	1	2985100	+		78549	28402	54848	54940	86607	86607					0.07695476554658853
TIELGRILE	9	Unmodified	_TIELGRILE_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;ENST00000479369.6_1_1:144864133-144875987:-|nuORF	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MSMS	OPSCC_39_ClassI_Rep-1	1	522.3089599609375	2	522.308406	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.499	1	32.499	31.999	32.999	0								0	0	0	0.14599	1	2258	2258		82.241	4.9229	1				78550	8792	54849	54941	86608	86608					0.0826629864880033
TIELGRILE	9	Unmodified	_TIELGRILE_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;ENST00000479369.6_1_1:144864133-144875987:-|nuORF	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MSMS	OPSCC_39_ClassI_Rep-1	1	522.3084716796875	2	522.308406	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.581	1	32.581	32.081	33.081	0								0	0	0	0.21285	1	2271	2271		74.255	0	1				78551	8792	54849	54941	86609	86609					0.0826629864880033
TIFGEEVSI	9	Unmodified	_TIFGEEVSI_					0	0	0		ENST00000378244.6_1_12:100631797-100635442:-|nuORF	ENST00000378244.6_1_12:100631797-100635442:-|nuORF	ENST00000378244.6_1_12:100631797-100635442:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7613525390625	2	497.758215	993.501877	0.3821	0.00019019	-2.0048	-0.00099789	-1.6227	-0.0008077	497.7593775839292	75.491	1.2323	75.502	75.051	76.284	0.010376					98	32	5	0	0	0	0.22754	2	9168	9168;9182		85.359	3.0545	1	2444000			78552	13234	54850	54942	86610;86611	86610					0.004866415951596537
TIFLLIMY	8	Unmodified	_TIFLLIMY_					0	0	0		ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7036437988281	2	507.29064	1012.56673	-0.14626	-7.4197E-05	-0.46315	-0.00023495	-0.60941	-0.00030915	507.2902913591839	33.077	0.68215	32.877	32.489	33.171	-0.20019					34	16	3	0	0	0	0.027866	1	2293	2293		33.516	6.7195	1	955750			78553	9181	54851	54943	86612	86612					0.06094544867437435
TIFLSVRNL	9	Unmodified	_TIFLSVRNL_					0	0	0		ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8177490234375	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.6504	1	11025	11025		49.442	3.4693	1	3741200			78554	15518	54852	54944	86613	86613					0.09498308748334239
TIFLSVRNL	9	Unmodified	_TIFLSVRNL_					0	0	0		ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.817138671875	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.50848	1	10959	10959		58.782	2.0609	1	3781500			78555	15518	54852	54944	86614	86614					0.09498308748334239
TIFLSVRNL	9	Unmodified	_TIFLSVRNL_					0	0	0		ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8143920898438	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.6504	2	10640	10640;10652		49.442	7.0454	1	5249700			78556	15518	54852	54944	86615;86616	86615					0.09498308748334239
TIFLSVRNL	9	Unmodified	_TIFLSVRNL_					0	0	0		ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	ENST00000494069.1_1_3:197566242-197575018:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8139038085938	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.6504	3	10641	10641;10653;10665		49.442	3.4693	1	4853400			78557	15518	54852	54944	86617;86618;86619	86617					0.09498308748334239
TIGIWGNGFI	10	Unmodified	_TIGIWGNGFI_					0	0	0		ENSG00000121381|ENST00000240691|TAS2R9	ENSG00000121381|ENST00000240691|TAS2R9	ENSG00000121381|ENST00000240691|TAS2R9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2889404296875	2	539.290017	1076.56548	-0.63759	-0.00034385	3.0176	0.0016274	2.38	0.0012835	539.2916749936275	65.469	0.57815	65.227	64.964	65.542	-0.24145					21	13	2	0	0	0	0.64538	1	7480	7480		71.877	3.0906	1	1280300			78558	3869	54853	54945	86620	86620					0.030260468229243997
TIGKNRLEL	9	Unmodified	_TIGKNRLEL_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3106689453125	2	522.314023	1042.61349	-0.5108	-0.0002668	1.453	0.00075894	0.94223	0.00049214	522.3145142338739	31.962	0.43879	32.031	31.805	32.244	0.06885					30	10	4	0	0	0	0.20967	1	2142	2142		87.754	2.3948	1	1124800	+		78559	26705	54854	54946	86621	86621					0.0938912074293512
TIGNTPWQP	9	Unmodified	_TIGNTPWQP_					0	0	0			REV__ENST00000441222.7_1_4:53463611-53463788:-|nuORF	REV__ENST00000441222.7_1_4:53463611-53463788:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7989196777344	2	507.256174	1012.49779	0.31335	0.00015895	2.5523	0.0012947	2.8657	0.0014536	507.7595147584749	58.662	0.61946	58.662	58.38	58.999	0					26	16	3	0	0	0	0.024466	1	6653	6653		31.53	1.0262	1	209610	+		78560	32540	54855	54947	86622	86622					-0.007954031079066226
TIGPLLLVIP	10	Unmodified	_TIGPLLLVIP_					0	0	0			REV__ENST00000489120.5_1_2:27346693-27351996:+|nuORF	REV__ENST00000489120.5_1_2:27346693-27351996:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.2606201171875	2	518.344261	1034.67397	-0.51441	-0.00026664	2.7558	0.0014284	2.2413	0.0011618	518.3456704037151	57.566	0.70504	57.566	56.936	57.641	0					42	18	3	0	0	0	0.03519	1	6488	6488		10.866	0	1	412830	+		78561	24303	54856	54948	86623	86623					0.1580183807332105
TIGRKGYGSI	10	Unmodified	_TIGRKGYGSI_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;NUP98|p.K995Nfs*7|1|0.08|ENSG00000110713|chr11:3705348-3705349|-/ATTTTACAAGAAAGCTG|frameshift_variant;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2640380859375	2	526.298373	1050.58219	-1.2176	-0.0006408	1.7946	0.0009445	0.57706	0.00030371	526.299219096773	48.168	0.54398	48.168	47.938	48.482	0					28	15	2	0	0	0	0.03519	1	4919	4919		24.519	0	1	908980			78562	3057	54857	54949	86624	86624					0.058925477088678235
TIGVLVRL	8	Unmodified	_TIGVLVRL_					0	0	0		ENST00000544075.5_1_11:73101650-73105363:+|nuORF;ENSG00000054967|ENST00000064780|RELT	ENST00000544075.5_1_11:73101650-73105363:+|nuORF	ENST00000544075.5_1_11:73101650-73105363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.756103515625	2	435.792195	869.569838	0.27528	0.00011996	-0.88789	-0.00038693	-0.61261	-0.00026697	435.79172757869276	63.991	0.4692	63.739	63.518	63.987	-0.25141					18	12	2	0	0	0	0.027866	1	7485	7485		29.15	0	1	166240			78563	1181	54858	54950	86625	86625					0.12983556036476784
TIHIRLHI	8	Unmodified	_TIHIRLHI_					0	0	0			REV__ZSCAN22|p.V481I|1|0.39|ENSG00000182318|chr19:58339291-58339291|G/A|missense_variant	REV__ZSCAN22|p.V481I|1|0.39|ENSG00000182318|chr19:58339291-58339291|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7835693359375	2	501.813993	1001.61343	0.51576	0.00025882	3.9109	0.0019625	4.4266	0.0022213	501.8139001589436	72.299	0.25499	72.018	71.845	72.1	-0.28124					8	6	2	0	0	0	0.027866	1	8733	8733		40.573	0	1	40632	+		78564	37828	54859	54951	86626	86626					0.11269165533599335
TIHLLKLGSP	10	Unmodified	_TIHLLKLGSP_					0	0	0		ENST00000534562.1_1_11:9749605-9771962:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70	ENST00000534562.1_1_11:9749605-9771962:+|nuORF	ENST00000534562.1_1_11:9749605-9771962:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7922973632812	2	539.834591	1077.65463	-0.94053	-0.00050773	-0.35576	-0.00019205	-1.2963	-0.00069978	539.8341087973512	64.585	1.488	64.585	64.311	65.799	0					80	40	3	0	0	0	0.03519	1	7801	7801		37.812	12.237	1	2292900			78565	4729	54860	54952	86627	86627					0.11890881782414908
TIHSETSR	8	Unmodified	_TIHSETSR_					0	0	0			REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	REV__RALGAPA1|p.S1201Hfs*16|1|0.13|ENSG00000174373|chr14:35671472-35671472|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2654724121094	2	465.735606	929.456658	0.15779	7.3487E-05	4.0915	0.0019055	4.2492	0.001979	465.73741436022414	45.894	0.72617	45.797	45.461	46.187	-0.096649					45	19	4	0	0	0	0.027866	1	4429	4429		16.473	0	1	1814900	+		78566	26858	54861	54953	86628	86628					-0.010891641473790514
TIHVPNIAT	9	Unmodified	_TIHVPNIAT_					0	0	0		nc|ENSG00000073969|P46459-2|NSF;ENSG00000073969|ENST00000398238|NSF	nc|ENSG00000073969|P46459-2|NSF	nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2847595214844	2	483.274367	964.53418	-0.24142	-0.00011667	-1.5184	-0.00073379	-1.7598	-0.00085046	483.27333506804524	54.841	0.45183	54.695	54.57	55.022	-0.14609					20	11	3	0	0	0	0.024438	1	5832	5832		36.447	7.2972	1	142400			78567	1521	54862	54954	86629	86629					0.05049473788801606
TIIEGLSYV	9	Unmodified	_TIIEGLSYV_					0	0	0			REV__ENSG00000154144|ENST00000441174|TBRG1	REV__ENSG00000154144|ENST00000441174|TBRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.77508544921875	2	497.776408	993.538263	0.38742	0.00019285	-3.2812	-0.0016333	-2.8937	-0.0014404	497.7747674784176	100.81	1.1712	100.67	100.46	101.63	-0.13364					54	28	3	0	0	0	0.80658	1	12547	12547		38.806	0	1	642740	+		78568	24941	54863	54955	86630	86630					0.04123518491860523
TIIEGLSYV	9	Unmodified	_TIIEGLSYV_					0	0	0			REV__ENSG00000154144|ENST00000441174|TBRG1	REV__ENSG00000154144|ENST00000441174|TBRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.77435302734375	2	497.776408	993.538263	0.48999	0.00024391	-3.272	-0.0016287	-2.782	-0.0013848	497.7747342576897	100.8	1.2787	100.67	100.4	101.68	-0.12576					63	32	3	0	0	0	0.59099	1	12534	12534		53.351	7.3792	1	770490	+		78569	24941	54863	54955	86631	86631					0.04123518491860523
TIIEGLSYV	9	Unmodified	_TIIEGLSYV_					0	0	0			REV__ENSG00000154144|ENST00000441174|TBRG1	REV__ENSG00000154144|ENST00000441174|TBRG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.77398681640625	2	497.776408	993.538263	-0.099282	-4.942E-05	-2.9061	-0.0014466	-3.0054	-0.001496	497.7749738154906	100.92	0.87547	100.75	100.46	101.33	-0.17178					51	22	3	0	0	0	0.59099	1	12505	12505		53.351	2.016	1	606910	+		78570	24941	54863	54955	86632	86632					0.04123518491860523
TIIGLLANIN	10	Unmodified	_TIIGLLANIN_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.2794799804688	2	521.318774	1040.623	-0.26746	-0.00013943	-0.94993	-0.00049521	-1.2174	-0.00063464	521.3183508073284	60.266	0.34406	60.015	59.87	60.215	-0.25091					15	8	2	0	0	0	0.03519	1	6668	6668		20.947	5.3051	1	95109	+		78571	20775;36023	54864	54956	86633	86633					0.10430889028475576
TIIIDANASI	10	Unmodified	_TIIIDANASI_					0	0	0		ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5	ENSG00000105737|ENST00000593562|GRIK5	ENSG00000105737|ENST00000593562|GRIK5	MSMS	OPSCC_39_ClassI_Rep-3	3	515.790283203125	2	515.792589	1029.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.366	1	52.458	51.958	52.958	0.091938								0	0	0	0.39651	1	5534	5534		71.877	0.58177	1				78572	2720	54865	54957	86634	86634					0.057023058948516336
TIIIDNSPQ	9	Unmodified	_TIIIDNSPQ_					0	0	0		nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENSG00000137770|ENST00000260327|CTDSPL2	nc|ENSG00000137770|Q05D32-2|CTDSPL2	nc|ENSG00000137770|Q05D32-2|CTDSPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.23162841796875	2	500.769114	999.523675	-0.74954	-0.00037535	-1.548	-0.00077519	-2.2975	-0.0011505	500.76766395078687	38.418	0.48575	38.335	38.083	38.569	-0.082512					14	12	2	0	0	0	0.024374	1	3191	3191		19.104	0	1	142800			78573	5152	54866	54958	86635	86635					0.023894463437159175
TIIIFHSL	8	Unmodified	_TIIIFHSL_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;nc|ENSG00000064655|O00167-3|EYA2;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2	nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000064655|O00167-3|EYA2	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7518615722656	2	472.284203	942.553853	0.067829	3.2035E-05	-4.3225	-0.0020414	-4.2547	-0.0020094	472.2820838874491	33.689	0.88405	33.688	33.38	34.264	-0.0015793					30	22	2	0	0	0	0.027866	1	2459	2459		12.207	0.69583	1	515000			78574	6650;1279	54867	54959	86636	86636					0.08027849799555042
TIIIMTKIN	9	Oxidation (M)	_TIIIM(Oxidation (M))TKIN_		TIIIM(1)TKIN		TIIIM(57)TKIN	0	0	1		ENST00000532094.5_1_11:420655-431830:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8173828125	2	531.81501	1061.61547	0.30294	0.00016111	2.8637	0.001523	3.1666	0.0016841	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.53979	1	10939	10939		56.721	10.749	1	3405600			78575	16280	54868	54960	86637	86637		534			0.0871241343654674
TIIIMTKIN	9	Oxidation (M)	_TIIIM(Oxidation (M))TKIN_		TIIIM(1)TKIN		TIIIM(57)TKIN	0	0	1		ENST00000532094.5_1_11:420655-431830:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8154907226562	2	531.81501	1061.61547	-0.11038	-5.8701E-05	3.3846	0.0018	3.2743	0.0017413	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.53979	1	10638	10638		56.721	7.2795	1	4521600			78576	16280	54868	54960	86638	86638		534			0.0871241343654674
TIINNEIDETI	11	Unmodified	_TIINNEIDETI_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-5|CASK	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.7489013671875	3	425.553997	1273.64016	-0.58107	-0.00024728	-2.6749	-0.0011383	-3.256	-0.0013856	425.88724399835263	26.043	0.22148	26.02	25.82	26.042	-0.023088					6	4	2	0	0	0	0.024757	1	1276	1276		25.892	9.9711	1	21614			78577	5926	54869	54961	86639	86639					0.014287200529452093
TIIRENVL	8	Unmodified	_TIIRENVL_					0	0	0		ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.29071044921875	2	479.290017	956.565481	-0.065014	-3.1161E-05	-0.024231	-1.1614E-05	-0.089245	-4.2774E-05	479.2897517332639	31.136	0.77501	30.983	30.681	31.456	-0.15231					48	19	4	0	0	0	0.35998	1	2032	2032		102.77	17.414	1	3739900			78578	8320	54870	54962	86640	86640					0.0854604682289164
TIIRSSTT	8	Unmodified	_TIIRSSTT_					0	0	0			REV__ENST00000300249.9_1_18:32621372-32650196:+|nuORF	REV__ENST00000300249.9_1_18:32621372-32650196:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.7521057128906	2	439.750724	877.486896	-0.26779	-0.00011776	-4.156	-0.0018276	-4.4238	-0.0019454	439.7485843662552	40.147	0.34473	39.922	39.696	40.041	-0.225					11	8	2	0	0	0	0.027866	1	3455	3455		21.96	0	1	130370	+		78579	30045	54871	54963	86641	86641					0.04325194517809905
TIIRVGKSL	9	Unmodified	_TIIRVGKSL_					0	0	0		ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2784118652344	2	493.821484	985.628415	-0.2901	-0.00014326	0.23153	0.00011434	-0.058569	-2.8923E-05	493.821458569819	19.924	0.47799	19.761	19.576	20.054	-0.16262					22	9	4	0	0	0	0.024359	1	517	517		40.058	0	1	122370			78580	6339	54872	54964	86642	86642					0.13502612610943743
TIIRYLLDTL	10	Unmodified	_TIIRYLLDTL_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;BIRC6|p.N2205*|1|0.26|ENSG00000115760|chr2:32473129-32473130|-/T|frameshift_variant	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.5790710449219	3	407.579818	1219.71762	0.66975	0.00027298	-2.6101	-0.0010638	-1.9403	-0.00079084	407.578775677104	34.474	1.0318	34.474	34.168	35.2	0					74	26	4	0	0	0	1.0447	1	2558	2558		40.058	7.2458	1	5706400			78581	186	54873	54965	86643	86643					0.11655402779797441
TIITCLGPTP	10	Unmodified	_TIITCLGPTP_					0	0	0		ENST00000358334.9_1_10:95139690-95140987:-|nuORF	ENST00000358334.9_1_10:95139690-95140987:-|nuORF	ENST00000358334.9_1_10:95139690-95140987:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2274169921875	2	508.27826	1014.54197	-0.88203	-0.00044832	3.0768	0.0015639	2.1948	0.0011156	508.2798701333973	30.336	0.50074	30.157	29.909	30.41	-0.17817					17	11	2	0	0	0	0.03519	1	1913	1913		42.396	12.555	1	105560			78582	12713	54874	54966	86644	86644					0.03527864994077845
TIKAFFPK	8	Unmodified	_TIKAFFPK_					0	0	0		ENST00000510740.1_1_5:36668711-36725248:-|nuORF	ENST00000510740.1_1_5:36668711-36725248:-|nuORF	ENST00000510740.1_1_5:36668711-36725248:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.7879638671875	2	476.286746	950.558939	0.14468	6.8908E-05	-4.3433	-0.0020687	-4.1986	-0.0019998	476.28450400863466	60.049	0.59321	59.848	59.616	60.209	-0.20016					43	15	4	0	0	0	0.027866	1	6818	6818		42.474	0	1	1229600			78583	15828	54875	54967	86645	86645					0.08168153662177247
TIKDLMMHL	9	2 Oxidation (M)	_TIKDLM(Oxidation (M))M(Oxidation (M))HL_		TIKDLM(1)M(1)HL		TIKDLM(59)M(59)HL	0	0	2			REV__ENSG00000179846|ENST00000686631|NKPD1	REV__ENSG00000179846|ENST00000686631|NKPD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2689819335938	2	567.288302	1132.56205	-1.1201	-0.00063542	-2.8034	-0.0015903	-3.9235	-0.0022258	567.286790704525	40.857	0.17339	40.88	40.797	40.97	0.023006					5	4	2	0	0	0	0.023417	1	3559	3559		58.782	18.004	1	131260	+		78584	27296	54876	54968	86646	86646		810;811			0.0010729266239195567
TIKEGCDSPLY	11	Unmodified	_TIKEGCDSPLY_					0	0	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.29052734375	2	613.292096	1224.56964	-1.3678	-0.00083883	-1.8261	-0.0011199	-3.1938	-0.0019588	613.2910663344024	60.993	2.0779	60.787	60.213	62.291	-0.20599					148	51	4	0	0	0	0.6032	1	6786	6786		69.628	0	1	52007000	+		78585	22567	54877	54969	86647	86647					-0.03366276536348778
TIKEGCDSPLY	11	Unmodified	_TIKEGCDSPLY_					0	0	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2904663085938	2	613.292096	1224.56964	-1.0024	-0.00061478	-2.4462	-0.0015002	-3.4486	-0.002115	613.2906327929812	61.043	2.0404	60.789	60.253	62.293	-0.25373					176	50	5	0	0	0	0.44817	1	6815	6815		79.713	2.395	1	55372000	+		78586	22567	54877	54969	86648	86648					-0.03366276536348778
TIKEKKEAV	9	Unmodified	_TIKEKKEAV_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3179931640625	2	523.316232	1044.61791	0.20123	0.00010531	-0.37446	-0.00019596	-0.17322	-9.0651E-05	523.3158833450477	18.329	0.74305	18.125	17.767	18.51	-0.20371					39	14	5	0	0	0	0.54416	1	285	285		56.434	6.8977	1	309170			78587	6240	54878	54970	86649	86649					0.09738585165860059
TIKGRLNY	8	Unmodified	_TIKGRLNY_					0	0	0		ENSG00000113742|ENST00000265085|CPEB4	ENSG00000113742|ENST00000265085|CPEB4	ENSG00000113742|ENST00000265085|CPEB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.24615478515625	2	482.782359	963.550165	-0.529	-0.00025539	-0.99323	-0.00047951	-1.5222	-0.00073491	482.7819693843129	38.885	0.31605	38.786	38.702	39.018	-0.098755					12	8	2	0	0	0	0.027866	1	3280	3280		6.7355	0	1	118740			78588	3324	54879	54971	86650	86650					0.06693180025683887
TIKKKKISA	9	Unmodified	_TIKKKKISA_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.8450622558594	2	508.844959	1015.67537	-0.33439	-0.00017015	0.3291	0.00016746	-0.0052878	-2.6907E-06	508.8448947792593	17.212	0.25274	17.005	16.863	17.116	-0.20669					12	4	3	0	0	0	0.40693	1	148	148		65.465	31.293	1	105860			78589	1335	54880	54972	86651	86651					0.1681547216207946
TIKKPVKLP	9	Unmodified	_TIKKPVKLP_					0	0	0			REV__ENST00000297788.8_2_7:128455827-128457854:+|nuORF	REV__ENST00000297788.8_2_7:128455827-128457854:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2689208984375	2	512.349877	1022.6852	-0.46201	-0.00023671	-0.060065	-3.0774E-05	-0.52207	-0.00026748	512.3496421346983	78.863	1.0007	78.863	78.658	79.658	0					48	23	3	0	0	0	0.024457	1	9872	9872		29.15	9.1528	1	447110	+		78590	30016	54881	54973	86652	86652					0.17476660167460523
TIKNGDVSL	9	Unmodified	_TIKNGDVSL_					0	0	0			REV__nc|ENSG00000196235|O00267-2|SUPT5H	REV__nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.76434326171875	2	473.763832	945.513111	-0.28668	-0.00013582	0.23746	0.0001125	-0.04922	-2.3319E-05	473.76387065282745	34.912	0.64501	34.89	34.551	35.196	-0.021763					44	16	3	0	0	0	0.39228	1	2639	2639		66.429	0	1	3512600	+		78591	28151	54882	54974	86653	86653					0.03817463689279066
TIKPIKAGPL	10	Unmodified	_TIKPIKAGPL_					0	0	0			REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	REV__SENP6|p.Q882Rfs*18|1|0.18|ENSG00000112701|chr6:75702998-75702998|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8184204101562	2	519.33951	1036.66447	0.014044	7.2939E-06	-0.48051	-0.00024955	-0.46647	-0.00024226	519.3391292836676	72.097	0.78262	72.097	71.831	72.614	0					33	19	2	0	0	0	0.03519	1	8764	8764		29.17	9.1733	1	959650	+		78592	22020	54883	54975	86654	86654					0.14760069787803332
TIKTEFNSL	9	Unmodified	_TIKTEFNSL_					0	0	0		ENST00000559994.5_1_15:85189295-85197510:-|nuORF;ENST00000558608.1_1_15:85189295-85191289:-|nuORF	ENST00000559994.5_1_15:85189295-85197510:-|nuORF	ENST00000559994.5_1_15:85189295-85197510:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7953491210938	2	526.784764	1051.55498	-1.3317	-0.0007015	2.7253	0.0014356	1.3936	0.00073412	526.7858212554739	35.635	0.92557	35.611	35.194	36.12	-0.023571					34	24	2	0	0	0	0.024427	1	2818	2818		42.396	0	1	382260			78593	16791	54884	54976	86655	86655					0.031260193778280154
TIKTEFNSL	9	Unmodified	_TIKTEFNSL_					0	0	0		ENST00000559994.5_1_15:85189295-85197510:-|nuORF;ENST00000558608.1_1_15:85189295-85191289:-|nuORF	ENST00000559994.5_1_15:85189295-85197510:-|nuORF	ENST00000559994.5_1_15:85189295-85197510:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.784764	1051.55498	-1.603	-0.00084445	3.4652	0.0018254	1.8622	0.00098096	526.7861464293022	35.79	0.53185	35.79	35.531	36.063	0	0.087669	0.00066617	NaN	47.657	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405390			78594	16791	54884	54976							0.031260193778280154
TIKTKRSI	8	Unmodified	_TIKTKRSI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.8055725097656	2	473.805834	945.597115	1.1025	0.00052238	-0.94485	-0.00044767	0.15768	7.4709E-05	473.80519963399433	19.636	0.64294	19.402	19.176	19.819	-0.23345					23	12	3	0	0	0	0.80469	1	420	420		58.782	10.866	1	151210			78595	3976	54885	54977	86656	86656					0.122140395768497
TIKTKRSI	8	Unmodified	_TIKTKRSI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.805834	945.597115	0.48695	0.00023072	-0.5178	-0.00024534	-0.030847	-1.4616E-05	473.8054619507364	19.569	0.49236	19.408	19.183	19.676	-0.16079	-0.021922	0.00022475	NaN	58.782	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145050			78596	3976	54885	54977							0.122140395768497
TIKTKRSI	8	Unmodified	_TIKTKRSI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF	ENSG00000123416|ENST00000336023|TUBA1B	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.805834	945.597115	0.96235	0.00045597	-0.91277	-0.00043247	0.049588	2.3495E-05	473.805257880226	19.681	0.44581	19.481	19.305	19.751	-0.2001	0.050118	-0.00014953	NaN	58.782	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163280			78597	3976	54885	54977							0.122140395768497
TIKTRHNEA	9	Unmodified	_TIKTRHNEA_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2468872070312	2	535.291079	1068.56761	-0.53069	-0.00028408	4.2306	0.0022646	3.6999	0.0019805	535.2932939534029	73.876	0.39247	73.611	73.368	73.761	-0.26479					16	9	2	0	0	0	0.024466	1	8683	8683		31.53	4.8369	1	377950	+		78598	20714	54886	54978	86657	86657					0.03606475560695799
TIKVINKDKTT	11	Unmodified	_TIKVINKDKTT_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.240234375	3	420.922244	1259.7449	0.83813	0.00035279	-0.90621	-0.00038144	-0.068078	-2.8656E-05	420.9217243972065	37.036	0.35407	36.826	36.645	36.999	-0.2092					13	8	2	0	0	0	0.024789	1	2955	2955		11.455	2.6553	1	88280	+		78599	27683	54887	54979	86658	86658					0.12541886320150297
TILALACRSFQ	11	Unmodified	_TILALACRSFQ_					0	0	0		ENST00000451097.5_1_10:99476970-99477081:+|nuORF	ENST00000451097.5_1_10:99476970-99477081:+|nuORF	ENST00000451097.5_1_10:99476970-99477081:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.18292236328125	3	408.225269	1221.65398	2.0153	0.00082269	-1.876	-0.00076582	0.1393	5.6864E-05	408.5586871490589	24.73	0.60535	24.549	24.028	24.634	-0.18089					18	13	2	0	0	0	0.024747	1	1090	1090		21.78	9.3476	1	50750			78600	14515	54888	54980	86659	86659					0.05201719071055777
TILANIVNA	9	Unmodified	_TILANIVNA_					0	0	0		nc|ENSG00000185946|Q96LT9-2|RNPC3;ENSG00000185946|ENST00000423855|RNPC3	nc|ENSG00000185946|Q96LT9-2|RNPC3	nc|ENSG00000185946|Q96LT9-2|RNPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.77545166015625	2	464.776742	927.538931	0.79131	0.00036778	-0.95219	-0.00044256	-0.16088	-7.4773E-05	464.7761605066309	51.041	0.53441	50.929	50.675	51.209	-0.11163					40	13	4	0	0	0	0.80003	1	5243	5243		39.253	1.4413	1	3202700			78601	9493	54889	54981	86660	86660					0.07226357931551775
TILDCLINI	9	Unmodified	_TILDCLINI_					0	0	0			REV__ENSG00000156218|ENST00000286744|ADAMTSL3	REV__ENSG00000156218|ENST00000286744|ADAMTSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8185119628906	2	509.286085	1016.55762	1.2267	0.00062476	-1.8154	-0.00092454	-0.58864	-0.00029979	509.2851054065622	74.502	0.5008	74.502	74.256	74.757	0					17	11	2	0	0	0	0.02435	1	9151	9151		26.693	0	1	137190	+		78602	25059	54890	54982	86661	86661					0.050001515111148365
TILDLSYNQ	9	Unmodified	_TILDLSYNQ_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7743530273438	2	533.774396	1065.53424	-1.1982	-0.00063957	1.4537	0.00077596	0.25553	0.00013639	533.7748788619867	84.263	1.4675	84.19	83.83	85.298	-0.072769					91	34	4	0	0	0	0.20967	1	10494	10494		87.754	2.8388	1	2577800			78603	9338	54891	54983	86662	86662					0.004094289981367183
TILDPNSSSI	10	Unmodified	_TILDPNSSSI_					0	0	0			REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.30322265625	2	523.771854	1045.52915	0.7465	0.000391	3.2875	0.0017219	4.034	0.0021129	523.7733302903792	85.934	1.3788	85.785	85.368	86.747	-0.14967					63	31	3	0	0	0	0.03519	1	10398	10398		35.152	0.97948	1	666530	+		78604	20437	54892	54984	86663	86663					0.008211251355305649
TILEQQRR	8	Unmodified	_TILEQQRR_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2974243164062	2	522.301447	1042.58834	-0.59555	-0.00031106	2.7204	0.0014209	2.1248	0.0011098	522.3028092754301	86.374	0.77441	86.397	86.072	86.847	0.023666					26	17	2	0	0	0	0.027866	1	10835	10835		21.96	4.5949	1	325170			78605	9229	54893	54985	86664	86664					0.06875065940380409
TILETLLI	8	Unmodified	_TILETLLI_					0	0	0			REV__ENSG00000000938|ENST00000374005|FGR	REV__ENSG00000000938|ENST00000374005|FGR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2196044921875	2	458.291694	914.568835	-0.45377	-0.00020796	1.9846	0.00090951	1.5308	0.00070155	458.2924471213561	40.055	0.6159	39.825	39.467	40.083	-0.2302					30	15	3	0	0	0	0.027866	1	3456	3456		8.8223	0	1	340920	+		78606	19753	54894	54986	86665	86665					0.10813296876915501
TILGLIFVVSY	11	Unmodified	_TILGLIFVVSY_					0	0	0			REV__ENSG00000147145|ENST00000614823|LPAR4	REV__ENSG00000147145|ENST00000614823|LPAR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.7425537109375	3	408.912797	1223.71656	0.22521	9.2091E-05	-0.7546	-0.00030856	-0.52939	-0.00021647	408.9123516745934	55.196	0.93869	55.294	54.881	55.819	0.098015					68	25	4	0	0	0	0.024747	1	6037	6037		11.932	5.2728	1	660610	+		78607	24531	54895	54987	86666	86666					0.11365188410900373
TILILTLLDSH	11	Unmodified	_TILILTLLDSH_					0	0	0		ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8687744140625	2	619.871371	1237.72819	-0.22332	-0.00013843	-2.6621	-0.0016501	-2.8854	-0.0017886	619.8694138737308	104.71	0.52811	104.71	104.42	104.95	0					38	15	4	0	0	0	1.0592	1	13434	13434		22.58	1.7425	1	233400			78608	8910	54896	54988	86667	86667					0.11883385434225602
TILLAPGWLF	10	Unmodified	_TILLAPGWLF_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	565.8009643554688	2	565.83406	1129.65357	-1.1796	-0.00066747	3.7724	0.0021346	2.5928	0.0014671	565.8360950834963	21.574	0.91414	21.646	21.352	22.266	0.071487					44	18	4	0	0	0	0.03519	1	661	661		6.7355	0	1	486420	+		78609	20873	54897	54989	86668	86668					0.09392667413499112
TILLDLTNI	9	Unmodified	_TILLDLTNI_					0	0	0			REV__CASP8|p.R71T|1|0.33|ENSG00000064012|chr2:201266698-201266698|G/C|missense_variant	REV__CASP8|p.R71T|1|0.33|ENSG00000064012|chr2:201266698-201266698|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.30517578125	2	508.305332	1014.59611	-0.22438	-0.00011405	-0.18798	-9.5553E-05	-0.41236	-0.00020961	508.30510884182195	98.357	0.98793	98.192	98	98.988	-0.16521					51	22	3	0	0	0	0.12602	1	12180	12180		104.75	3.1458	1	513780	+		78610	19251	54898	54990	86669	86669					0.08939780417267684
TILLHLFVK	9	Unmodified	_TILLHLFVK_					0	0	0		ENST00000425443.6_1_6:75825611-75827151:-|nuORF	ENST00000425443.6_1_6:75825611-75827151:-|nuORF	ENST00000425443.6_1_6:75825611-75827151:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3077392578125	2	542.349877	1082.6852	-0.06467	-3.5074E-05	-4.4099	-0.0023917	-4.4746	-0.0024268	542.3475904096464	72.796	0.89556	72.515	72.262	73.157	-0.28124					34	21	2	0	0	0	0.024457	1	8901	8901		21.96	2.8564	1	143560			78611	14066	54899	54991	86670	86670					0.1471666016745985
TILLIVNDI	9	Unmodified	_TILLIVNDI_					0	0	0			REV__ENSG00000159720|ENST00000290949|ATP6V0D1	REV__ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2967224121094	2	507.3157	1012.61685	0.70083	0.00035554	-1.7271	-0.00087617	-1.0262	-0.00052062	507.314678271856	58.78	0.91112	58.593	58.311	59.222	-0.18705					38	24	3	0	0	0	0.024427	1	6619	6619		34.173	0	1	772710	+		78612	25272	54900	54992	86671	86671					0.11104370796954299
TILLRLVKRGK	11	Unmodified	_TILLRLVKRGK_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2554016113281	3	432.966118	1295.87652	0.6696	0.00028991	-4.1514	-0.0017974	-3.4818	-0.0015075	433.298475402784	102.99	0.2754	102.82	102.64	102.91	-0.17034					8	6	2	0	0	0	0.024873	1	12784	12784		9.6461	3.9474	1	795210	+		78613	23518	54901	54993	86672	86672					0.24042161198553913
TILLSVISL	9	Unmodified	_TILLSVISL_					0	0	0		ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2	ENSG00000099804|ENST00000215574|CDC34	ENSG00000099804|ENST00000215574|CDC34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7843322753906	2	479.812793	957.611034	1.0712	0.00051397	-1.2739	-0.00061123	-0.2027	-9.7259E-05	479.81201047563263	96.434	0.95032	96.436	96.154	97.105	0.0020752					35	21	2	0	0	0	0.021088	1	12256	12256		90.777	0	1	247630			78614	2085	54902	54994	86673	86673					0.13053272285276307
TILLVVGPAE	10	Unmodified	_TILLVVGPAE_					0	0	0		nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25	nc|ENSG00000148339|Q6KCM7-4|SLC25A25	nc|ENSG00000148339|Q6KCM7-4|SLC25A25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2740173339844	2	506.307875	1010.6012	-0.61627	-0.00031202	-4.3381	-0.0021964	-4.9544	-0.0025085	506.30621345759477	66.99	0.4492	66.99	66.755	67.205	0					15	10	2	0	0	0	0.03519	1	8005	8005		34.173	0	1	901390			78615	18369	54903	54995	86674	86674					0.09632084279905939
TILMSLPLF	9	Unmodified	_TILMSLPLF_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2991333007812	2	517.801371	1033.58819	-0.040909	-2.1183E-05	-0.28229	-0.00014617	-0.3232	-0.00016735	517.8013409931486	67.812	0.85452	67.812	67.285	68.14	0					32	21	2	0	0	0	0.022924	1	8106	8106		63.306	0	1	3584300	+		78616	23665	54904	54996	86675	86675					0.07273929896155096
TILPIRFT	8	Unmodified	_TILPIRFT_					0	0	0			REV__ENST00000495807.1_1_6:31829758-31830565:-|nuORF	REV__ENST00000495807.1_1_6:31829758-31830565:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2748107910156	2	480.797478	959.580402	-0.092334	-4.4394E-05	3.5129	0.001689	3.4206	0.0016446	480.798997632411	39.33	0.7578	39.165	38.934	39.692	-0.16459					36	19	3	0	0	0	0.027866	1	3325	3325		55.504	0	1	674010	+		78617	28599	54905	54997	86676	86676					0.09899538690888221
TILQTVDLV	9	Unmodified	_TILQTVDLV_					0	0	0		nc|ENSG00000065613|Q9H2G2-2|SLK;ENSG00000065613|ENST00000369755|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2905578613281	2	501.297507	1000.58046	0.11863	5.947E-05	3.5494	0.0017793	3.668	0.0018388	501.8001528888142	19.911	0.24363	19.75	19.627	19.871	-0.16079					8	4	3	0	0	0	0.024495	1	470	470		34.173	0	1	51089			78618	1313	54906	54998	86677	86677					0.08019493900235375
TILRPAPLP	9	Unmodified	_TILRPAPLP_					0	0	0			REV__ENST00000456105.2_1_1:202842376-202842583:+|nuORF	REV__ENST00000456105.2_1_1:202842376-202842583:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2682800292969	2	489.310752	976.606951	0.46253	0.00022632	-1.6478	-0.00080629	-1.1853	-0.00057997	489.30969264960873	58.499	0.7306	58.499	58.304	59.035	0					35	19	3	0	0	0	0.024386	1	6707	6707		33.516	8.0654	1	712860	+		78619	32793	54907	54999	86678	86678					0.117712275822214
TILRPAPLP	9	Unmodified	_TILRPAPLP_					0	0	0			REV__ENST00000456105.2_1_1:202842376-202842583:+|nuORF	REV__ENST00000456105.2_1_1:202842376-202842583:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	489.310752	976.606951	0.67173	0.00032868	-1.746	-0.00085435	-1.0743	-0.00052566	489.3095263093187	58.787	0.51208	58.6	58.424	58.936	-0.18705	0.064898	-0.00025042	NaN	33.516	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673690	+		78620	32793	54907	54999							0.117712275822214
TILRPAPLP	9	Unmodified	_TILRPAPLP_					0	0	0			REV__ENST00000456105.2_1_1:202842376-202842583:+|nuORF	REV__ENST00000456105.2_1_1:202842376-202842583:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	489.310752	976.606951	0.055302	2.706E-05	-1.0611	-0.00051919	-1.0058	-0.00049213	489.30988690648576	58.415	0.44862	58.506	58.333	58.782	0.091217	-0.029051	0.00041988	NaN	33.516	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	770880	+		78621	32793	54907	54999							0.117712275822214
TILRTAAAL	9	Unmodified	_TILRTAAAL_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2534484863281	2	465.292559	928.570566	-0.15938	-7.4157E-05	-0.44589	-0.00020747	-0.60526	-0.00028162	465.29212959345955	40.057	0.30745	39.832	39.658	39.965	-0.225					13	7	2	0	0	0	0.024205	1	3448	3448		35.618	0	1	211920	+		78622	24260	54908	55000	86679	86679					0.10342350685493784
TILSWPSF	8	Unmodified	_TILSWPSF_					0	0	0		ENST00000478055.1_1_5:131553347-131562829:-|nuORF	ENST00000478055.1_1_5:131553347-131562829:-|nuORF	ENST00000478055.1_1_5:131553347-131562829:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.2602844238281	2	475.752736	949.490919	1.0578	0.00050326	-3.6836	-0.0017525	-2.6258	-0.0012492	475.75057794823334	40.525	0.87248	40.525	40.247	41.119	0					59	24	4	0	0	0	0.027866	1	3567	3567		50.025	4.0726	1	1559900			78623	15126	54909	55001	86680	86680					0.014152840115229992
TILTLFLPS	9	Unmodified	_TILTLFLPS_					0	0	0			REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7376708984375	2	502.804968	1003.59538	0.69766	0.00035079	3.5602	0.0017901	4.2578	0.0021409	502.8066858382882	36.124	0.21124	35.926	35.843	36.054	-0.19829					7	5	2	0	0	0	0.024523	1	2811	2811		15.642	4.7763	1	62914	+		78624	37095	54910	55002	86681	86681					0.09372985768243325
TILVTHQLQY	10	Unmodified	_TILVTHQLQY_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	608.2798461914062	2	608.340238	1214.66592	-1.076	-0.00065456	0.78157	0.00047546	-0.29441	-0.0001791	608.3405844250876	55.652	0.57935	55.437	55.201	55.78	-0.21551					24	15	2	0	0	0	0.03519	1	5989	5989		110.12	2.0324	1	127500			78625	4092	54911	55003	86682	86682					0.06717659085916239
TILVTHQLQY	10	Unmodified	_TILVTHQLQY_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	608.340238	1214.66592	-0.21099	-0.00012836	0.27559	0.00016765	0.064601	3.9299E-05	608.3403119682362	55.494	1.0228	55.494	55.116	56.139	0	0.098488	-0.00071008	NaN	110.12	84	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1910500			78626	4092	54911	55003							0.06717659085916239
TILVTHQLQY	10	Unmodified	_TILVTHQLQY_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	608.340238	1214.66592	-0.35936	-0.00021861	0.33977	0.0002067	-0.019592	-1.1919E-05	608.3403344844622	55.548	1.1458	55.392	55.027	56.173	-0.15602	-0.0037993	-0.000632	NaN	110.12	92	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1868900			78627	4092	54911	55003							0.06717659085916239
TILVTHQLQY	10	Unmodified	_TILVTHQLQY_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	608.340238	1214.66592	-1.8073	-0.0010995	1.2581	0.00076538	-0.54918	-0.00033409	608.3409820501432	55.514	0.42918	55.357	55.178	55.607	-0.15656	-0.038921	0.00048537	NaN	110.12	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175420			78628	4092	54911	55003							0.06717659085916239
TILVTHQLQY	10	Unmodified	_TILVTHQLQY_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	608.340238	1214.66592	-0.4295	-0.00026128	0.32727	0.00019909	-0.10223	-6.219E-05	608.3400960544233	55.584	0.46259	55.368	55.205	55.668	-0.21607	-0.028244	-0.00064721	NaN	110.12	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137690			78629	4092	54911	55003							0.06717659085916239
TIMFYGMITAL	11	Unmodified	_TIMFYGMITAL_					0	0	0		AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.88372802734375	3	420.883744	1259.6294	-0.73449	-0.00030914	1.562	0.00065743	0.82752	0.00034829	420.8843235644783	55.893	0.98909	55.736	55.424	56.413	-0.15656					59	25	4	0	0	0	1.0022	1	6038	6038		36.318	5.7488	1	2005800			78630	44	54912	55004	86683	86683					0.009973228733315409
TIMFYGMITAL	11	Unmodified	_TIMFYGMITAL_					0	0	0		AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	420.883744	1259.6294	0.10296	4.3336E-05	0.71373	0.0003004	0.81669	0.00034373	420.88398074595625	55.89	0.70646	55.674	55.372	56.078	-0.21607	-0.031407	-0.00074377	NaN	36.318	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1847800			78631	44	54912	55004							0.009973228733315409
TIMFYGMITAL	11	Unmodified	_TIMFYGMITAL_					0	0	0		AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	AGO3|p.P732Qfs*52|1|0.39|ENSG00000126070|chr1:36043467-36043467|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	420.883744	1259.6294	-0.90626	-0.00038143	1.6033	0.00067482	0.69708	0.00029339	420.8843061606772	55.921	0.90509	55.705	55.412	56.317	-0.21551	0.00013053	0.00037948	NaN	36.318	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368200			78632	44	54912	55004							0.009973228733315409
TIMKMEVTI	9	Unmodified	_TIMKMEVTI_					0	0	0		ENST00000460064.1_1_3:191087795-191087846:+|nuORF	ENST00000460064.1_1_3:191087795-191087846:+|nuORF	ENST00000460064.1_1_3:191087795-191087846:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3110961914062	2	533.287771	1064.56099	-0.4836	-0.0002579	-4.3839	-0.0023379	-4.8675	-0.0025958	533.2840211100307	35.451	0.62092	35.235	34.913	35.534	-0.21555					19	15	2	0	0	0	0.024456	1	2683	2683		51.193	22.043	1	62944			78633	14647	54913	55005	86684	86684					0.03129078293477505
TIMLFVVIF	9	Unmodified	_TIMLFVVIF_					0	0	0			REV__ENST00000482587.5_3_1:179833497-179833611:-|nuORF	REV__ENST00000482587.5_3_1:179833497-179833611:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7927856445312	2	541.819564	1081.62458	-1.4792	-0.00080144	0.51901	0.00028121	-0.96015	-0.00052023	541.8198617726114	44.405	0.6046	44.405	44.12	44.725	0					41	17	3	0	0	0	0.024517	1	4247	4247		19.36	3.7182	1	764620	+		78634	33487	54914	55006	86685	86685					0.08702806792871343
TIMLGTSLRY	10	Unmodified	_TIMLGTSLRY_					0	0	0			REV__ENSG00000148488|ENST00000377602|ST8SIA6	REV__ENSG00000148488|ENST00000377602|ST8SIA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2689819335938	2	577.815541	1153.61653	-0.23322	-0.00013476	-2.9523	-0.0017059	-3.1855	-0.0018406	577.8133548342281	63.932	0.72218	63.673	63.39	64.112	-0.25824					28	18	2	0	0	0	0.03519	1	7199	7199		56.721	0	1	283290	+		78635	24622	54915	55007	86686	86686					0.04586627805451826
TINAEQLL	8	Unmodified	_TINAEQLL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.27178955078125	2	451.2531	900.491647	0.43818	0.00019773	-0.0062115	-2.803E-06	0.43196	0.00019493	451.25304327978375	75.688	0.50034	75.699	75.401	75.901	0.011635					22	13	2	0	0	0	0.027866	1	9183	9183		42.474	6.8562	1	517330	+		78636	25715	54916	55008	86687	86687					0.03742078660570769
TINAEQLL	8	Unmodified	_TINAEQLL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.2531	900.491647	-0.21649	-9.7694E-05	0.72708	0.0003281	0.51058	0.0002304	451.2533662515466	75.828	0.60973	75.583	75.339	75.949	-0.24455	-0.060642	8.6065E-05	NaN	94.006	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389550	+		78637	25715	54916	55008							0.03742078660570769
TINALQQEV	9	Unmodified	_TINALQQEV_					0	0	0			REV__nc|ENSG00000171551|O95672-2|ECEL1	REV__nc|ENSG00000171551|O95672-2|ECEL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2679748535156	2	508.274564	1014.53457	-0.98824	-0.0005023	1.9598	0.0009961	0.97153	0.0004938	508.2746908448571	62.13	0.35083	61.953	61.766	62.117	-0.17781					10	8	2	0	0	0	0.024523	1	7003	7003		29.15	3.6994	1	66957	+		78638	26580	54917	55009	86688	86688					0.027888487180121047
TINDTQSSH	9	Unmodified	_TINDTQSSH_					0	0	0			REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.80035400390625	2	501.727978	1001.4414	-0.91302	-0.00045809	4.013	0.0020134	3.0999	0.0015553	501.73015297370716	46.578	0.17158	46.425	46.342	46.514	-0.15301					5	4	2	0	0	0	0.024523	1	4591	4591		5.9211	2.5111	1	78092	+		78639	27415	54918	55010	86689	86689					-0.059260757352149085
TINEIEDTF	9	Unmodified	_TINEIEDTF_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.2857055664062	2	541.256037	1080.49752	-0.45736	-0.00024755	4.2505	0.0023006	3.7932	0.0020531	541.2581772897423	40.612	0.36016	40.387	40.187	40.547	-0.225					12	9	2	0	0	0	0.024323	1	3499	3499		27.882	0	1	286820			78640	4292	54919	55011	86690	86690					-0.039508676184368596
TINHDGDPEA	10	Unmodified	_TINHDGDPEA_					0	0	0			REV__nc|ENSG00000130810|Q9NQ55-2|PPAN	REV__nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.2898559570312	2	534.73326	1067.45197	-0.50904	-0.0002722	-3.1426	-0.0016805	-3.6516	-0.0019527	534.73125814794	39.511	0.23259	39.346	39.265	39.498	-0.16458					8	5	2	0	0	0	0.03519	1	3354	3354		31.53	0	1	71049	+		78641	23158	54920	55012	86691	86691					-0.07906093080805476
TINLLKCSYPD	11	Unmodified	_TINLLKCSYPD_					0	0	0			REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	421.9166564941406	3	422.884801	1265.63257	2.5744	0.0010887	1.5535	0.00065697	4.1279	0.0017456	422.885201296261	19.622	0.39061	19.688	19.438	19.829	0.066195					10	7	2	0	0	0	0.024746	1	370	370		15.921	3.714	1	12798	+		78642	25504	54921	55013	86692	86692					0.010382892516872744
TINPNAFLL	9	Unmodified	_TINPNAFLL_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.231689453125	2	501.784567	1001.55458	-0.19362	-9.7154E-05	-3.0431	-0.001527	-3.2367	-0.0016241	501.7825038375647	45.457	0.53905	45.205	44.786	45.325	-0.25252					34	14	3	0	0	0	0.024477	1	4237	4237		27.882	0	1	418010			78643	9498	54922	55014	86693	86693					0.053866444486288856
TINRLFTI	8	Unmodified	_TINRLFTI_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.2931823730469	2	489.292559	976.570566	-0.28462	-0.00013926	1.1853	0.00057994	0.90064	0.00044068	489.2929976411419	66.475	0.59512	66.193	65.904	66.499	-0.28148					43	19	3	0	0	0	0.44658	1	7884	7884		90.777	0	1	6168800	+		78644	27764	54923	55015	86694	86694					0.0813435068552053
TINVSAGVPVT	11	Unmodified	_TINVSAGVPVT_					0	0	0			REV__ENST00000581744.1_1_17:80274441-80275395:-|nuORF	REV__ENST00000581744.1_1_17:80274441-80275395:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.7877807617188	2	529.298039	1056.58152	-0.77065	-0.0004079	-0.83744	-0.00044326	-1.6081	-0.00085116	529.297329750578	51.968	1.5576	52.06	51.344	52.902	0.091942					86	37	4	0	0	0	0.97926	1	5540	5540		41.427	2.1738	1	8195200	+		78645	26805	54924	55016	86695	86695					0.055497082691545074
TINYDEFPT	9	Unmodified	_TINYDEFPT_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.3104858398438	2	550.250754	1098.48696	-0.37474	-0.0002062	-2.5094	-0.0013808	-2.8842	-0.001587	550.2493784068432	73.266	0.58201	72.989	72.669	73.251	-0.2769					26	13	3	0	0	0	0.024477	1	8634	8634		35.618	14.671	1	329500			78646	16261	54925	55017	86696	86696					-0.0583485027284496
TINYDEFPT	9	Unmodified	_TINYDEFPT_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.250754	1098.48696	-0.38428	-0.00021145	-2.328	-0.001281	-2.7123	-0.0014924	550.2495258468305	73.236	0.4539	72.971	72.724	73.178	-0.26479	0.052428	9.9034E-06	NaN	19.997	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359870			78647	16261	54925	55017							-0.0583485027284496
TIPDFIFANV	10	Unmodified	_TIPDFIFANV_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.802490234375	2	568.802957	1135.59136	-0.7512	-0.00042728	1.1159	0.0006347	0.36466	0.00020742	568.8032728203835	97.335	1.6791	97.335	96.925	98.604	0					87	38	4	0	0	0	0.21865	7	12428	12396;12408;12417;12428;12442;12454;12471		118.74	45.864	1	1393200			78648	3902	54926	55018	86697;86698;86699;86700;86701;86702;86703	86700					0.028988962745188473
TIPDFIFANV	10	Unmodified	_TIPDFIFANV_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8026123046875	2	568.802957	1135.59136	0.36648	0.00020846	0.093569	5.3222E-05	0.46005	0.00026168	568.8025662394693	97.221	1.5183	97.23	96.795	98.313	0.0089111					90	34	4	0	0	0	0.21865	6	12381	12357;12369;12381;12393;12406;12432		118.74	41.969	1	1306700			78649	3902	54926	55018	86704;86705;86706;86707;86708;86709	86706					0.028988962745188473
TIPDFIFANV	10	Unmodified	_TIPDFIFANV_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.8030395507812	2	568.802957	1135.59136	0.15051	8.5613E-05	0.58706	0.00033392	0.73757	0.00041953	568.8027610871281	97.367	1.4683	97.367	96.926	98.394	-3.8147E-05					88	33	4	0	0	0	0.42812	7	12352	12330;12341;12352;12364;12377;12390;12403		95.815	39.381	1	1284700			78650	3902	54926	55018	86710;86711;86712;86713;86714;86715;86716	86712					0.028988962745188473
TIPDFIFANV	10	Unmodified	_TIPDFIFANV_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.803466796875	2	568.802957	1135.59136	0.89057	0.00050656	-0.4563	-0.00025955	0.43427	0.00024701	568.8024520625137	97.226	0.99213	97.09	96.746	97.738	-0.1367					49	21	3	0	0	0	1.0616	1	12023	12023		37.812	0	1	226450			78651	3902	54926	55018	86717	86717					0.028988962745188473
TIPDFIFANV	10	Unmodified	_TIPDFIFANV_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	568.802957	1135.59136	1.1107	0.00063174	-0.53214	-0.00030268	0.57851	0.00032906	568.8022881485323	97.211	1.0235	97.088	96.75	97.774	-0.12368	-0.11838	-0.00097102	NaN	118.74	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197410			78652	3902	54926	55018							0.028988962745188473
TIPECDIGNG	10	Unmodified	_TIPECDIGNG_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2880554199219	2	509.729132	1017.44371	-0.6172	-0.00031461	3.9729	0.0020251	3.3557	0.0017105	509.7311224710907	65.014	0.43732	64.758	64.504	64.941	-0.25563					19	10	2	0	0	0	0.03519	1	7405	7405		13.454	0	1	187210	+		78653	23612	54927	55019	86718	86718					-0.06431363321792105
TIPGFPTPLNM	11	Unmodified	_TIPGFPTPLNM_					0	0	0			REV__nc|ENSG00000185946|Q96LT9-2|RNPC3	REV__nc|ENSG00000185946|Q96LT9-2|RNPC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	594.3104858398438	2	594.310092	1186.60563	-0.38791	-0.00023054	1.2555	0.00074614	0.86756	0.0005156	594.3106853917436	61.609	0.70603	61.68	61.355	62.061	0.071129					58	18	4	0	0	0	0.96599	1	7080	7080		44.377	2.9506	1	3664700	+		78654	27811	54928	55020	86719	86719					0.01979225431159648
TIPGHEFL	8	Unmodified	_TIPGHEFL_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2582702636719	2	457.242535	912.470518	-0.096968	-4.4338E-05	-3.5054	-0.0016028	-3.6024	-0.0016472	457.24009271869113	31.612	0.84819	31.612	31.3	32.149	0					44	20	3	0	0	0	0.027866	1	2202	2202		38.806	28.541	1	166450			78655	3968	54929	55021	86720	86720					0.010781133517184571
TIPHGIGTIV	10	Unmodified	_TIPHGIGTIV_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2916259765625	2	504.297842	1006.58113	-0.31658	-0.00015965	-1.8243	-0.00091999	-2.1409	-0.0010796	504.29633338861873	61.589	1.2254	61.589	60.996	62.222	0					90	32	5	0	0	0	0.79525	1	7096	7096		60.972	2.19	1	15843000	+		78656	36786	54930	55022	86721	86721					0.07810333339966746
TIPHGIGTIV	10	Unmodified	_TIPHGIGTIV_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2961120605469	2	504.297842	1006.58113	-0.054928	-2.77E-05	-0.88891	-0.00044827	-0.94383	-0.00047597	504.2972000121617	61.882	0.77148	61.655	61.415	62.187	-0.22663					79	20	5	0	0	0	0.941	1	7134	7134		51.335	3.6781	1	14914000	+		78657	36786	54930	55022	86722	86722					0.07810333339966746
TIPIGRLLN	9	Unmodified	_TIPIGRLLN_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.29791259765625	2	498.813659	995.612765	-0.71185	-0.00035508	0.039799	1.9852E-05	-0.67205	-0.00033523	498.8135828349979	61.929	0.46583	61.992	61.622	62.087	0.062763					20	12	3	0	0	0	0.024021	1	7066	7066		49.442	0	1	460830			78658	3858	54931	55023	86723	86723					0.11478326093902069
TIPILPLP	8	Unmodified	_TIPILPLP_					0	0	0		ENST00000263980.7_1_1:27480949-27481393:-|nuORF	ENST00000263980.7_1_1:27480949-27481393:-|nuORF	ENST00000263980.7_1_1:27480949-27481393:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	432.28240966796875	2	432.283672	862.552791	0.085853	3.7113E-05	-2.996	-0.0012951	-2.9101	-0.001258	432.2822362113221	51.961	1.3052	51.961	51.633	52.938	0					71	34	3	0	0	0	1.0574	1	5542	5542		26.796	2.2921	1	3406900			78659	11545	54932	55024	86724	86724					0.11601635430656643
TIPISAPLTV	10	Unmodified	_TIPISAPLTV_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7880554199219	2	506.307875	1010.6012	-0.46366	-0.00023475	4.1844	0.0021186	3.7207	0.0018838	506.30989114214117	48.753	0.79779	48.753	48.378	49.176	0					57	22	3	0	0	0	0.03519	1	5063	5063		58.782	20.97	1	2095600			78660	1690;37967	54933	55025	86725	86725					0.09632084279883202
TIPKSPAETV	10	Unmodified	_TIPKSPAETV_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3232421875	2	521.792589	1041.57063	-0.08357	-4.3606E-05	1.7294	0.00090238	1.6458	0.00085878	521.7931484235028	45.233	0.45457	44.98	44.67	45.124	-0.25252					12	8	2	0	0	0	0.03519	1	4273	4273		32.812	8.6097	1	364870	+		78661	24185	54934	55026	86726	86726					0.05150305894835583
TIPKSPAETV	10	Unmodified	_TIPKSPAETV_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.792589	1041.57063	-1.0879	-0.00056765	2.1284	0.0011106	1.0406	0.00054296	521.793601365724	45.02	0.57622	44.92	44.472	45.048	-0.099449	-0.084316	0.0012377	NaN	32.812	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450140	+		78662	24185	54934	55026							0.05150305894835583
TIPLIVTGTP	10	Unmodified	_TIPLIVTGTP_					0	0	0		nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2587890625	2	506.307875	1010.6012	-0.44305	-0.00022432	2.1836	0.0011056	1.7406	0.00088126	506.30914153391103	40.604	1.1212	40.627	40.237	41.358	0.023006					54	31	2	0	0	0	0.03519	1	3625	3625		19.997	2.6318	1	298780			78663	2232	54935	55027	86727	86727					0.09632084279917308
TIPNSITAR	9	Unmodified	_TIPNSITAR_					0	0	0			REV__ENSG00000122884|ENST00000394890|P4HA1	REV__ENSG00000122884|ENST00000394890|P4HA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.250732421875	2	486.777274	971.539994	-0.39844	-0.00019395	-0.18335	-8.9249E-05	-0.58178	-0.0002832	486.7770072766149	32.634	0.68555	32.697	32.39	33.076	0.062885					40	17	4	0	0	0	0.024495	1	2288	2288		19.997	0	1	899730	+		78664	22669	54936	55028	86728	86728					0.053085723004642205
TIPRAKKL	8	Unmodified	_TIPRAKKL_					0	0	0			REV__ENSG00000120256|ENST00000239367|LRP11	REV__ENSG00000120256|ENST00000239367|LRP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2298889160156	2	463.810919	925.607286	-0.62752	-0.00029105	-0.4369	-0.00020264	-1.0644	-0.00049369	463.81057679092135	38.813	0.79469	38.813	38.597	39.391	0					56	21	4	0	0	0	0.027866	1	3353	3353		23.042	14.22	1	2769900	+		78665	22520	54937	55029	86729	86729					0.1415064730207405
TIPSLQNSL	9	Unmodified	_TIPSLQNSL_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2977294921875	2	486.771657	971.528761	-0.18044	-8.7834E-05	0.59926	0.00029171	0.41882	0.00020387	486.7716108424415	67.511	1.4271	67.223	66.749	68.176	-0.28834					58	35	3	0	0	0	0.024344	1	8040	8040		45.972	5.1941	1	410900			78666	1788	54938	55030	86730	86730					0.04185750206318062
TIPVAKFK	8	Unmodified	_TIPVAKFK_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2425231933594	2	452.286746	902.558939	-0.36515	-0.00016515	0.15456	6.9905E-05	-0.21059	-9.5249E-05	452.2856606875424	53.578	0.28751	53.673	53.518	53.806	0.095669					8	7	2	0	0	0	0.027866	1	5716	5716		18.324	5.3652	1	263340	+		78667	25715	54939	55031	86731	86731					0.10376153662184606
TIPVLREP	8	Unmodified	_TIPVLREP_					0	0	0			REV__ENST00000532415.5_1_16:18477017-18479494:-|nuORF	REV__ENST00000532415.5_1_16:18477017-18479494:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.75054931640625	2	462.779285	923.544017	0.1172	5.424E-05	-0.26257	-0.00012151	-0.14537	-6.7272E-05	462.77898884140114	42.619	0.91552	42.619	42.087	43.002	0					61	25	3	0	0	0	0.027866	1	3877	3877		19.36	0	1	1081900	+		78668	34581	54940	55032	86732	86732					0.0791866179419003
TIQAVAEIV	9	Unmodified	_TIQAVAEIV_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.310546875	2	472.276575	942.538597	0.041595	1.9644E-05	0.41609	0.00019651	0.45769	0.00021615	472.27664022865696	48.474	0.58615	48.474	48.209	48.795	0					23	16	2	0	0	0	0.024374	1	4922	4922		40.778	0	1	234430	+		78669	21525	54941	55033	86733	86733					0.06502938211701803
TIQAVSLFD	9	Unmodified	_TIQAVSLFD_					0	0	0			REV__ENSG00000183346|ENST00000648843|CABCOCO1	REV__ENSG00000183346|ENST00000648843|CABCOCO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3004150390625	2	497.266207	992.517862	-0.15243	-7.58E-05	-0.47206	-0.00023474	-0.6245	-0.00031054	497.2657429673321	64.495	0.5108	64.292	64.028	64.539	-0.20254					34	12	3	0	0	0	0.024389	1	7369	7369		42.864	11.334	1	483910	+		78670	27567	54942	55034	86734	86734					0.021303478320419345
TIQFHQPQ	8	Unmodified	_TIQFHQPQ_					0	0	0		nc|ENSG00000170854|Q8IUF8-2|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.28326416015625	2	499.756341	997.498129	-0.96779	-0.00048366	3.5468	0.0017725	2.579	0.0012889	499.75799499439296	38.036	1.6465	37.953	37.072	38.718	-0.082516					80	45	2	0	0	0	0.027866	1	3089	3089		27.882	0	1	846070			78671	8085	54943	55035	86735	86735					-0.0007198338804528248
TIQGGLQD	8	Unmodified	_TIQGGLQD_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;ENST00000579402.1_1_17:25958249-25965426:+|nuORF;ENST00000578983.1_1_17:18380198-18389672:+|nuORF;ENST00000448970.6_1_17:25958249-25968014:+|nuORF;ENST00000579930.5_1_17:25958249-25969437:+|nuORF;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.23028564453125	2	416.213975	830.413397	-0.8792	-0.00036594	1.7184	0.00071522	0.8392	0.00034929	416.2158835609094	26.93	0.3787	27.011	26.758	27.136	0.081291					14	9	3	0	0	0	0.027866	1	1339	1339		44.117	0	1	41023			78672	7887	54944	55036	86736	86736					-0.008593539246589899
TIQKVKKDL	9	Unmodified	_TIQKVKKDL_					0	0	0		nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	nc|ENSG00000120948|Q13148-4|TARDBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2695922851562	2	536.839874	1071.66519	-1.7142	-0.00092025	1.5045	0.00080765	-0.20975	-0.0001126	536.8405451690097	29.39	0.50619	29.39	29.186	29.692	0					28	12	3	0	0	0	0.023454	1	1821	1821		71.877	20.542	1	440550			78673	18221	54945	55037	86737	86737					0.13222864436852433
TIQLNVSWML	10	Unmodified	_TIQLNVSWML_					0	0	0		nc|ENSG00000105492|O43699-5|SIGLEC6	nc|ENSG00000105492|O43699-5|SIGLEC6	nc|ENSG00000105492|O43699-5|SIGLEC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	601.8312377929688	2	602.823366	1203.63218	-0.52312	-0.00031535	-2.907	-0.0017524	-3.4301	-0.0020677	602.821830384704	72.757	0.68773	72.48	72.197	72.884	-0.2769					25	15	2	0	0	0	0.03519	1	8520	8520		15.642	0	1	148190			78674	18147	54946	55038	86738	86738					0.038509143224928266
TIQTSKDDTSD	11	Unmodified	_TIQTSKDDTSD_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.77587890625	2	605.775322	1209.53609	-1.5114	-0.00091555	-0.55326	-0.00033515	-2.0646	-0.0012507	605.7748380265266	69.887	1.5833	69.899	68.642	70.225	0.012421					107	41	4	0	0	0	0.849	1	8379	8379		54.722	8.2656	1	1173500			78675	7259	54947	55039	86739	86739					-0.06029606774586682
TIRDYGKEP	9	Unmodified	_TIRDYGKEP_					0	0	0		ENST00000498712.5_1_8:67383822-67386037:+|nuORF	ENST00000498712.5_1_8:67383822-67386037:+|nuORF	ENST00000498712.5_1_8:67383822-67386037:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.7645874023438	2	539.780013	1077.54547	-0.62997	-0.00034005	4.1038	0.0022151	3.4738	0.0018751	539.7802495775748	49.835	0.56445	49.835	49.582	50.146	0					32	15	3	0	0	0	0.024319	1	5135	5135		47.657	13.485	1	650520			78676	15632	54948	55040	86740	86740					0.009802510922781948
TIREKINAA	9	Unmodified	_TIREKINAA_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.29840087890625	2	508.298373	1014.58219	-0.54383	-0.00027643	0.57407	0.0002918	0.030249	1.5375E-05	508.2984513607897	26.921	0.63015	26.679	26.488	27.119	-0.24217					28	14	3	0	0	0	0.28753	1	1448	1448		77.318	6.0219	1	875410			78677	2900	54949	55041	86741	86741					0.07548547708847764
TIREKINAA	9	Unmodified	_TIREKINAA_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2981262207031	2	508.298373	1014.58219	-0.43638	-0.00022181	-0.47161	-0.00023972	-0.90799	-0.00046153	508.2977211582459	26.738	0.93801	26.57	26.119	27.057	-0.16816					38	22	3	0	0	0	0.51687	1	1409	1409		58.23	6.8945	1	765830			78678	2900	54949	55041	86742	86742					0.07548547708847764
TIREKINAA	9	Unmodified	_TIREKINAA_					0	0	0		ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000579853.5_1_17:46048512-46051060:+|nuORF;ENST00000581708.5_1_17:46048512-46051791:+|nuORF;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000584525.5_1_17:46048512-46051498:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF	ENSG00000108465|ENST00000338399|CDK5RAP3	ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.298583984375	2	508.298373	1014.58219	-0.66529	-0.00033816	0.52172	0.00026519	-0.14357	-7.2977E-05	508.29838826838335	26.888	0.64133	26.732	26.544	27.185	-0.15664					26	14	3	0	0	0	0.54416	1	1416	1416		56.434	10.462	1	929900			78679	2900	54949	55041	86743	86743					0.07548547708847764
TIRFLVMAYRK	11	Unmodified	_TIRFLVMAYRK_					0	0	0			REV__ENSG00000188394|ENST00000616002|GPR21	REV__ENSG00000188394|ENST00000616002|GPR21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.60784912109375	3	466.607713	1396.80131	-0.31368	-0.00014637	1.0894	0.0005083	0.77568	0.00036194	466.6081733543235	97.806	1.0658	97.641	96.768	97.834	-0.16521					45	23	3	0	0	0	1.0764	1	12064	12064		17.833	3.7471	1	227560	+		78680	28036	54950	55042	86744	86744					0.11878235675840187
TIRFTFIRL	9	Unmodified	_TIRFTFIRL_					0	0	0			REV__ENST00000576468.1_1_16:3241284-3274614:+|nuORF	REV__ENST00000576468.1_1_16:3241284-3274614:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.8589477539062	2	583.855858	1165.69716	1.3634	0.00079603	3.7417	0.0021846	5.1051	0.0029806	583.8578996469528	97.062	1.11	97.062	96.705	97.815	-3.0518E-05					72	24	5	0	0	0	0.91321	1	12323	12323		31.53	2.3803	1	1447700	+		78681	35469	54951	55043	86745	86745					0.1209427691064775
TIRGEYPGF	9	Unmodified	_TIRGEYPGF_					0	0	0			REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3236694335938	2	520.263999	1038.51345	-1.2082	-0.00062861	1.0813	0.00056256	-0.12695	-6.6047E-05	520.7669009853138	51.811	0.5304	51.898	51.544	52.074	0.087006					18	14	2	0	0	0	0.024466	1	5432	5432		18.324	0	1	86270	+		78682	25725	54952	55044	86746	86746					-0.0042711659086762666
TIRGSHGGR	9	Unmodified	_TIRGSHGGR_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.74835205078125	2	470.757207	939.499861	0.33677	0.00015854	2.9626	0.0013947	3.2993	0.0015532	470.75840904271644	45.41	0.71095	45.454	45.214	45.925	0.043877					30	20	2	0	0	0	0.024323	1	4331	4331		27.882	0	1	834890			78683	1973	54953	55045	86747	86747					0.027690704205724614
TIRHKKGG	8	Unmodified	_TIRHKKGG_					0	0	0			REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	REV__nc|ENSG00000117859|Q96SU4-5|OSBPL9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	448.25860595703125	2	448.774868	895.535184	0.59196	0.00026566	2.7566	0.0012371	3.3486	0.0015028	448.7758454867614	86.772	0.60139	86.629	86.278	86.879	-0.14218					24	13	3	0	0	0	0.027866	1	10512	10512		17.365	10.629	1	144020	+		78684	22376	54954	55046	86748	86748					0.08323732948383622
TIRIRHIAVE	10	Unmodified	_TIRIRHIAVE_					0	0	0			REV__ENST00000521289.5_1_8:56986544-56986942:-|nuORF	REV__ENST00000521289.5_1_8:56986544-56986942:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.3663940429688	2	604.367121	1206.71969	-0.44133	-0.00026673	-0.063761	-3.8535E-05	-0.5051	-0.00030526	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.0997	1	13294	13294		14.865	0	1	5077600	+		78685	19889	54955	55047	86749	86749					0.12459876308275852
TIRITVPSWIP	11	Unmodified	_TIRITVPSWIP_					0	0	0			REV__ENSG00000158553|ENST00000444565|POM121L2	REV__ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8825073242188	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0075	2	11829	11805;11829		35.152	3.6039	1	3421300	+		78686	25204	54956	55048	86750;86751	86751					0.11490511390979918
TIRKDLKTG	9	Unmodified	_TIRKDLKTG_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN;ENST00000562969.1_1_16:81069676-81075119:+|nuORF	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.314208984375	2	516.314023	1030.61349	0.22709	0.00011725	-0.71687	-0.00037013	-0.48978	-0.00025288	516.313585376337	97.954	2.7122	97.952	97.189	99.901	-0.0020828					210	62	6	0	0	0	0.93097	1	12435	12435		30.318	0	1	31857000			78687	7566	54957	55049	86752	86752					0.09941120742928433
TIRKLFKD	8	Unmodified	_TIRKLFKD_					0	0	0			REV__ENSG00000148158|ENST00000374232|SNX30	REV__ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2907409667969	2	510.813659	1019.61277	-0.36369	-0.00018578	0.4198	0.00021444	0.056103	2.8658E-05	510.8135069307397	57.441	0.53022	57.441	57.073	57.603	0					21	13	2	0	0	0	0.027866	1	6473	6473		40.778	0	1	632620	+		78688	24597	54958	55050	86753	86753					0.10374326093892705
TIRLERANI	9	Unmodified	_TIRLERANI_					0	0	0			REV__ENSG00000102837|ENST00000219022|OLFM4	REV__ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7965698242188	2	543.324922	1084.63529	-0.25099	-0.00013637	-3.2223	-0.0017508	-3.4733	-0.0018871	543.3223152781682	72.293	0.86301	72.016	71.548	72.411	-0.2769					56	20	5	0	0	0	0.024344	1	8453	8453		30.318	0	1	1142700	+		78689	21330	54959	55051	86754	86754					0.09635925491488706
TIRRKRLKF	9	Unmodified	_TIRRKRLKF_					0	0	0			REV__ENSG00000005108|ENST00000423059|THSD7A	REV__ENSG00000005108|ENST00000423059|THSD7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5867614746094	3	406.603291	1216.78804	-0.18307	-7.4438E-05	-4.0522	-0.0016476	-4.2353	-0.0017221	406.60233150453064	25.437	0.58441	25.211	25.018	25.602	-0.22683					29	13	3	0	0	0	0.024473	1	1188	1188		49.536	16.724	1	235170	+		78690	19795	54960	55052	86755	86755					0.18832165678759338
TIRSLKRLWI	10	Unmodified	_TIRSLKRLWI_					0	0	0		ENST00000263377.6_1_19:15379807-15383627:-|nuORF	ENST00000263377.6_1_19:15379807-15383627:-|nuORF	ENST00000263377.6_1_19:15379807-15383627:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	643.4035034179688	2	643.408789	1284.80303	0.35482	0.00022829	-3.8136	-0.0024537	-3.4588	-0.0022254	643.4065276479043	104.41	0.52249	104.41	104.14	104.67	-0.0032196					36	12	4	0	0	0	1.1286	1	13330	13330		25.574	1.0549	1	413010			78691	11530	54961	55053	86756	86756					0.17201612756139184
TIRSLKRLWI	10	Unmodified	_TIRSLKRLWI_					0	0	0		ENST00000263377.6_1_19:15379807-15383627:-|nuORF	ENST00000263377.6_1_19:15379807-15383627:-|nuORF	ENST00000263377.6_1_19:15379807-15383627:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	643.4051513671875	2	643.408789	1284.80303	-0.092507	-5.952E-05	-2.9258	-0.0018825	-3.0183	-0.001942	643.4071063933097	104.54	0.54574	104.37	104.11	104.66	-0.16791					31	14	3	0	0	0	1.1088	1	13006	13006		31.53	3.6476	1	307510			78692	11530	54961	55053	86757	86757					0.17201612756139184
TIRTVQAKP	9	Unmodified	_TIRTVQAKP_					0	0	0		ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	ENSG00000060749|ENST00000650167|QSER1	ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.30206298828125	2	507.308741	1012.60293	-0.52271	-0.00026517	2.1988	0.0011155	1.6761	0.0008503	507.30874798521234	56.404	0.58475	56.501	56.067	56.652	0.097897					30	15	3	0	0	0	0.024438	1	6145	6145		29.17	4.6509	1	1024400			78693	1240	54962	55054	86758	86758					0.09713138088511641
TIRVNKHNAR	10	Unmodified	_TIRVNKHNAR_					0	0	0			REV__ENSG00000164188|ENST00000296604|RANBP3L	REV__ENSG00000164188|ENST00000296604|RANBP3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.5708923339844	3	403.570539	1207.68979	1.087	0.00043868	1.5368	0.0006202	2.6238	0.0010589	403.57102693625455	29.895	0.45605	29.973	29.802	30.258	0.078344					17	10	2	0	0	0	0.03519	1	1824	1824		20.837	8.0254	1	84119	+		78694	25713	54963	55055	86759	86759					0.09424937362928176
TIRWTLQSSLD	11	Unmodified	_TIRWTLQSSLD_					0	0	0		ENST00000556803.1_1_14:23820757-23821058:-|nuORF	ENST00000556803.1_1_14:23820757-23821058:-|nuORF	ENST00000556803.1_1_14:23820757-23821058:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.27423095703125	3	440.569981	1318.68811	0.4751	0.00020932	0.15062	6.6359E-05	0.62573	0.00027568	440.5697560950047	43.305	1.0907	43.336	42.939	44.029	0.030823					71	29	3	0	0	0	0.024748	1	3928	3928		24.232	5.7008	1	589140			78695	16719	54964	55056	86760	86760					0.04151838763664273
TIRWYKDGQ	9	Unmodified	_TIRWYKDGQ_					0	0	0		ENSG00000148357|ENST00000683500|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;nc|ENSG00000148357|Q8NDA2-4|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	ENSG00000148357|ENST00000683500|HMCN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.2857055664062	2	583.80128	1165.58801	-0.93187	-0.00054403	2.9863	0.0017434	2.0545	0.0011994	583.8030816091772	55.381	0.093971	55.15	55.096	55.19	-0.23087					4	2	2	0	0	0	0.021816	1	5943	5943		107.01	16.638	1	77119			78696	6023	54965	55057	86761	86761					0.011836462205110365
TISAPLPYEA	10	Unmodified	_TISAPLPYEA_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2973022460938	2	531.279315	1060.54408	-0.43037	-0.00022864	0.13318	7.0758E-05	-0.29718	-0.00015789	531.2788395474867	65.492	0.43427	65.492	65.326	65.76	0					16	11	2	0	0	0	0.03519	1	7787	7787		42.396	0	1	156840			78697	1355	54966	55058	86762	86762					0.01622617003522464
TISAYYAR	8	Unmodified	_TISAYYAR_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-9|RTEL1;ENST00000496281.1_1_20:62320320-62321363:+|nuORF;ENST00000480273.5_1_20:62319266-62327135:+|nuORF	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.28216552734375	2	472.745442	943.476331	-1.5945	-0.00075382	1.256	0.00059375	-0.33859	-0.00016007	472.74586766773115	51.857	0.85474	51.588	51.163	52.018	-0.26903					45	22	3	0	0	0	0.027866	1	5285	5285		31.955	0	1	497770			78698	18776	54967	55059	86763	86763					0.002332118633717073
TISCNTMVT	9	Carbamidomethyl (C),Oxidation (M)	_TISC(Carbamidomethyl (C))NTM(Oxidation (M))VT_	TISC(1)NTMVT	TISCNTM(1)VT	TISC(69)NTMVT	TISCNTM(69)VT	0	1	1		ENST00000361727.7_1_7:148113442-148113583:+|nuORF	ENST00000361727.7_1_7:148113442-148113583:+|nuORF	ENST00000361727.7_1_7:148113442-148113583:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.766357421875	2	521.730817	1041.44708	-0.88215	-0.00046025	-2.1099	-0.0011008	-2.992	-0.001561	521.7296978565336	47.686	0.91376	47.745	47.457	48.37	0.059097					43	26	2	0	0	0	0.023417	1	4702	4702		68.787	14.011	1	761380			78699	12805	54968	55060	86764	86764	172	478			-0.07198436539420072
TISDILRGPA	10	Unmodified	_TISDILRGPA_					0	0	0		ENSG00000087299|ENST00000267436|L2HGDH	ENSG00000087299|ENST00000267436|L2HGDH	ENSG00000087299|ENST00000267436|L2HGDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7688598632812	2	521.798206	1041.58186	-1.0878	-0.00056759	2.19	0.0011427	1.1023	0.00057516	521.7976298082498	55.174	0.94895	55.272	54.982	55.931	0.098015					30	25	2	0	0	0	0.03519	1	6053	6053		56.721	10.749	1	170100			78700	1844	54969	55061	86765	86765					0.06273127989015848
TISDVSGCLSV	11	Carbamidomethyl (C)	_TISDVSGC(Carbamidomethyl (C))LSV_	TISDVSGC(1)LSV		TISDVSGC(96)LSV		0	1	0		nc|ENSG00000185499|P15941-13|MUC1	nc|ENSG00000185499|P15941-13|MUC1	nc|ENSG00000185499|P15941-13|MUC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.2767333984375	2	569.276446	1136.53834	-1.0894	-0.00062019	1.8986	0.0010809	0.8092	0.00046066	569.2773502290091	82.352	2.2873	82.378	81.7	83.987	0.025711					132	53	4	0	0	0	0.23292	1	10207	10207		95.815	19.041	1	1981700			78701	18592	54970	55062	86766	86766	240				-0.024468495704468296
TISEPADEPD	10	Unmodified	_TISEPADEPD_					0	0	0			REV__ENSG00000177613|ENST00000331173|CSTF2T	REV__ENSG00000177613|ENST00000331173|CSTF2T	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3046875	2	537.235301	1072.45605	-0.68864	-0.00036996	-2.4299	-0.0013055	-3.1186	-0.0016754	537.234855000605	68.539	0.19785	68.539	68.482	68.68	0					5	4	2	0	0	0	0.03519	1	8242	8242		25.574	1.3713	1	59250	+		78702	27129	54971	55063	86767	86767					-0.07728048377771302
TISGKRIVE	9	Unmodified	_TISGKRIVE_					0	0	0			REV__ENST00000560458.5_1_15:59970098-59981480:-|nuORF	REV__ENST00000560458.5_1_15:59970098-59981480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2745056152344	2	501.800749	1001.58694	-0.44125	-0.00022142	0.28485	0.00014294	-0.1564	-7.8481E-05	501.8008128047405	48.177	0.99228	48.177	47.906	48.899	0					36	28	2	0	0	0	0.024263	1	4987	4987		51.335	0	1	140800	+		78703	24001	54972	55064	86768	86768					0.08621431851599937
TISLSLIDI	9	Unmodified	_TISLSLIDI_					0	0	0			REV__nc|ENSG00000285467|P0CG22|DHRS4L1	REV__nc|ENSG00000285467|P0CG22|DHRS4L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7909851074219	2	487.792058	973.569563	-0.96209	-0.0004693	-2.0167	-0.00098374	-2.9788	-0.001453	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.85329	1	10271	10271		35.618	2.1253	1	1891000	+		78704	37217	54973	55065	86769	86769					0.08172091525955238
TISQKSVDI	9	Unmodified	_TISQKSVDI_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.7768859863281	2	495.776939	989.539325	-0.60423	-0.00029956	-0.13639	-6.7621E-05	-0.74062	-0.00036718	495.77687344209716	27.944	1.3308	27.699	26.951	28.281	-0.24524					97	31	6	0	0	0	0.26413	1	1567	1567		80.455	7.5754	1	10356000			78705	1344	54974	55066	86770	86770					0.04413732860757591
TISQPSSLY	9	Unmodified	_TISQPSSLY_					0	0	0			REV__ENST00000468403.1_1_1:153748971-153749722:+|nuORF	REV__ENST00000468403.1_1_1:153748971-153749722:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.2555236816406	2	498.25584	994.497126	-0.31009	-0.0001545	0.62394	0.00031088	0.31385	0.00015638	498.25603384750275	62.246	0.94921	62.032	61.334	62.283	-0.21375					58	23	5	0	0	0	0.27161	1	6997	6997		79.451	2.6044	1	2303900	+		78706	24261	54975	55067	86771	86771					-0.0003424254762194323
TISQPSSLY	9	Unmodified	_TISQPSSLY_					0	0	0			REV__ENST00000468403.1_1_1:153748971-153749722:+|nuORF	REV__ENST00000468403.1_1_1:153748971-153749722:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	498.25584	994.497126	-0.54935	-0.00027372	0.77302	0.00038516	0.22367	0.00011144	498.2560415582344	62.372	1.2789	62.114	61.048	62.327	-0.25824	0.046209	1.0291E-05	NaN	79.451	62	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2251700	+		78707	24261	54975	55067							-0.0003424254762194323
TISRNRIN	8	Unmodified	_TISRNRIN_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.28094482421875	2	487.280515	972.546476	-0.87616	-0.00042694	3.9076	0.0019041	3.0314	0.0014772	487.28229791979885	57.352	0.99529	57.447	57.127	58.122	0.095306					74	26	4	0	0	0	0.83003	1	6408	6408		56.721	1.8265	1	14973000			78708	10059	54976	55068	86772	86772					0.059105102518515196
TISSAFNSL	9	Unmodified	_TISSAFNSL_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	469.76922607421875	2	470.242732	938.470912	-0.093814	-4.4115E-05	0.060658	2.8524E-05	-0.033156	-1.5592E-05	470.24293729594007	48.864	0.81651	48.711	48.295	49.111	-0.15277					36	22	2	0	0	0	0.022756	1	4918	4918		68.787	21.129	1	145760			78709	5200	54977	55069	86773	86773					-0.0007851171908441756
TISSAFNSL	9	Unmodified	_TISSAFNSL_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	470.242732	938.470912	0.19474	9.1576E-05	-0.060546	-2.8471E-05	0.1342	6.3105E-05	470.2427383641768	48.504	0.56975	48.57	48.265	48.835	0.066795	-0.030553	-0.00014161	NaN	68.787	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154160			78710	5200	54977	55069							-0.0007851171908441756
TISTDAFEDTV	11	Unmodified	_TISTDAFEDTV_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	600.3014526367188	2	599.777333	1197.54011	-1.2948	-0.00077659	-0.95307	-0.00057163	-2.2479	-0.0013482	599.7761650697797	60.622	0.67647	60.446	59.998	60.674	-0.1761					26	16	2	0	0	0	0.024747	1	6743	6743		24.519	0	1	123200			78711	5582	54978	55070	86774	86774					-0.05075517280852182
TISTQISANL	10	Unmodified	_TISTQISANL_					0	0	0			REV__ENSG00000181733|ENST00000641125|OR2Z1	REV__ENSG00000181733|ENST00000641125|OR2Z1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2879028320312	2	524.287671	1046.56079	-0.42673	-0.00022373	1.1052	0.00057947	0.67852	0.00035574	524.2882290766548	28.432	0.77021	28.28	27.885	28.655	-0.15195					63	18	5	0	0	0	1.0728	1	1661	1661		36.318	3.5671	1	4593400	+		78712	27419	54979	55071	86775	86775					0.039371178894725745
TITARRVGP	9	Unmodified	_TITARRVGP_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7768859863281	2	485.793258	969.571963	-0.37928	-0.00018425	-2.5342	-0.0012311	-2.9134	-0.0014153	485.7933073036795	41.29	0.73597	41.313	40.97	41.706	0.023006					32	20	2	0	0	0	0.022484	1	3713	3713		82.305	11.009	1	197460			78713	6415	54980	55072	86776	86776					0.08595984774285625
TITARRVGP	9	Unmodified	_TITARRVGP_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.793258	969.571963	-0.012439	-6.043E-06	-0.13259	-6.4409E-05	-0.14502	-7.0452E-05	485.79321271753463	41.194	0.4149	41.194	40.981	41.396	0	-0.065367	-8.7407E-05	NaN	82.305	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180060			78714	6415	54980	55072							0.08595984774285625
TITARRVGP	9	Unmodified	_TITARRVGP_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.793258	969.571963	0.028573	1.3881E-05	0.13226	6.425E-05	0.16083	7.8131E-05	485.793190587151	41.38	0.41317	41.256	41.051	41.464	-0.12317	-0.0030171	0.00016991	NaN	82.305	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196150			78715	6415	54980	55072							0.08595984774285625
TITARRVGP	9	Unmodified	_TITARRVGP_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.793258	969.571963	-0.25539	-0.00012407	0.10876	5.2835E-05	-0.14663	-7.1233E-05	485.79315551336316	41.297	0.50011	41.161	40.908	41.409	-0.13553	-0.0979	0.00014708	NaN	82.305	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569810			78716	6415	54980	55072							0.08595984774285625
TITARRVGP	9	Unmodified	_TITARRVGP_					0	0	0		ENST00000368674.5_1_10:128191356-128211334:-|nuORF;nc|nan|Q96M02-2|C10orf90;nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	ENST00000368674.5_1_10:128191356-128211334:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.793258	969.571963	-0.28827	-0.00014004	0.12528	6.0861E-05	-0.16299	-7.9179E-05	485.79322556312565	41.514	0.73292	41.287	40.966	41.699	-0.2278	0.027182	0.00016313	NaN	82.305	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863280			78717	6415	54980	55072							0.08595984774285625
TITKEKQDQ	9	Unmodified	_TITKEKQDQ_					0	0	0		nc|ENSG00000152936|Q8N9Z9-2|LMNTD1;nc|ENSG00000152936|Q8N9Z9-3|LMNTD1;nc|ENSG00000152936|Q8N9Z9-4|LMNTD1;nc|ENSG00000152936|Q8N9Z9|LMNTD1;ENSG00000152936|ENST00000458174|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3025512695312	2	545.790578	1089.5666	-0.96002	-0.00052397	0.77367	0.00042226	-0.18635	-0.00010171	545.7895356065411	65.287	0.68593	65.036	64.626	65.312	-0.25112					31	16	3	0	0	0	0.024405	1	7422	7422		27.882	0	1	284630			78718	6307	54981	55073	86777	86777					0.0254021640114388
TITLPAVALD	10	Unmodified	_TITLPAVALD_					0	0	0			REV__nc|ENSG00000171189|P39086-2|GRIK1;REV__nc|ENSG00000163873|Q13003-2|GRIK3	REV__nc|ENSG00000171189|P39086-2|GRIK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7790832519531	2	507.297507	1012.58046	0.11305	5.7351E-05	0.32191	0.0001633	0.43496	0.00022065	507.79887004348103	98.681	0.35045	98.692	98.607	98.957	0.010231					13	7	2	0	0	0	0.03519	1	12577	12577		51.335	0	1	47090	+		78719	26552;25649	54982	55074	86778	86778					0.07467493900230693
TITLTSPII	9	Unmodified	_TITLTSPII_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.73541259765625	2	479.794601	957.574648	0.08139	3.9051E-05	0.56617	0.00027165	0.64756	0.0003107	479.794561265518	59.553	0.15175	59.638	59.54	59.692	0.085682					5	3	2	0	0	0	0.024325	1	6717	6717		50.025	2.1089	1	142240			78720	1195	54983	55075	86779	86779					0.09416395388586807
TITQGSRDGH	10	Unmodified	_TITQGSRDGH_					0	0	0		nc|ENSG00000135835|Q5VZ46-2|KIAA1614;ENSG00000135835|ENST00000367588|KIAA1614	nc|ENSG00000135835|Q5VZ46-2|KIAA1614	nc|ENSG00000135835|Q5VZ46-2|KIAA1614	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7982788085938	2	536.262519	1070.51048	-0.094728	-5.0799E-05	1.2768	0.0006847	1.1821	0.0006339	536.2634038893342	88.874	0.84253	88.874	88.555	89.398	0					32	19	2	0	0	0	0.03519	1	11238	11238		64.207	20.09	1	459360			78721	4939	54984	55076	86780	86780					-0.021949917156462107
TITRFYPDL	9	Unmodified	_TITRFYPDL_					0	0	0			REV__nc|ENSG00000166912|Q9NXD2-2|MTMR10	REV__nc|ENSG00000166912|Q9NXD2-2|MTMR10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.2763061523438	2	563.300581	1124.58661	0.93616	0.00052734	-0.53991	-0.00030413	0.39625	0.00022321	563.2997754516367	82.383	0.50645	82.273	82.003	82.509	-0.11006					18	11	2	0	0	0	0.024344	1	10267	10267		54.776	0	1	121980	+		78722	26079	54985	55077	86781	86781					0.029300121317419325
TITRTRLTG	9	Unmodified	_TITRTRLTG_					0	0	0			REV__ENST00000397497.8_2_8:27296606-27296834:+|nuORF	REV__ENST00000397497.8_2_8:27296606-27296834:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.8034973144531	2	509.803823	1017.59309	0.28849	0.00014708	-0.65649	-0.00033468	-0.368	-0.00018761	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.87448	1	10483	10483		34.173	1.3601	1	3441300	+		78723	31773	54986	55078	86782	86782					0.08499950083137264
TITSTQTPT	9	Unmodified	_TITSTQTPT_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.2876281738281	2	475.245472	948.476391	0.44785	0.00021284	-1.1222	-0.00053332	-0.67435	-0.00032048	475.2451262453359	51.898	0.32828	51.714	51.524	51.852	-0.18405					15	8	2	0	0	0	0.022657	1	5365	5365		87.696	32.92	1	150380			78724	18650	54987	55079	86783	86783					9.167072710170032E-05
TITSTQTPT	9	Unmodified	_TITSTQTPT_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.245472	948.476391	1.0698	0.00050843	-1.6913	-0.00080377	-0.62144	-0.00029534	475.2445574682839	51.674	0.33891	51.674	51.431	51.77	0	0.0028146	-0.00070522	NaN	87.696	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357610			78725	18650	54987	55079							9.167072710170032E-05
TITSTQTPT	9	Unmodified	_TITSTQTPT_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.245472	948.476391	-0.70576	-0.00033541	0.059124	2.8098E-05	-0.64664	-0.00030731	475.24530925822097	51.54	0.33804	51.627	51.411	51.749	0.087006	-0.044987	0.00095852	NaN	87.696	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393940			78726	18650	54987	55079							9.167072710170032E-05
TIVDISRKINQ	11	Unmodified	_TIVDISRKINQ_					0	0	0		ENSG00000171202|ENST00000304511|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7628173828125	3	429.585743	1285.7354	0.31701	0.00013618	2.9818	0.001281	3.2988	0.0014171	429.5868894736238	61.6	0.89716	61.373	61.118	62.015	-0.22663					45	23	3	0	0	0	0.02478	1	7114	7114		25.892	0	1	662800			78727	8126	54988	55080	86784	86784					0.10396118034691426
TIVFAGLLGV	10	Unmodified	_TIVFAGLLGV_					0	0	0		ENSG00000169605|ENST00000377938|GKN1	ENSG00000169605|ENST00000377938|GKN1	ENSG00000169605|ENST00000377938|GKN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.30657958984375	2	495.305136	988.595718	-0.78553	-0.00038907	-3.5186	-0.0017428	-4.3041	-0.0021318	495.30325763512553	64.894	0.87003	64.894	64.422	65.292	0					64	23	5	0	0	0	0.68163	1	7665	7665		68.485	2.6815	1	3123500			78728	7955	54989	55081	86785	86785					0.10096405488093296
TIVGSLPLVC	10	Unmodified	_TIVGSLPLVC_					0	0	0			REV__ENST00000273590.3_1_3:49452419-49452602:+|nuORF	REV__ENST00000273590.3_1_3:49452419-49452602:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2904968261719	2	501.288628	1000.5627	0.31679	0.0001588	3.457	0.001733	3.7738	0.0018918	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	1.0781	1	10457	10457		35.618	1.4457	1	1878500	+		78729	29823	54990	55082	86786	86786					0.06244455373735036
TIVGSLPLVC	10	Unmodified	_TIVGSLPLVC_					0	0	0			REV__ENST00000273590.3_1_3:49452419-49452602:+|nuORF	REV__ENST00000273590.3_1_3:49452419-49452602:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2904968261719	2	501.288628	1000.5627	0.41475	0.00020791	3.1647	0.0015864	3.5794	0.0017943	501.2900962963429	83.412	2.4432	83.243	81.868	84.311	-0.16916					158	56	4	0	0	0	1.089	1	10059	10059		34.173	5.0025	1	2920800	+		78730	29823	54990	55082	86787	86787					0.06244455373735036
TIVGSLPLVC	10	Unmodified	_TIVGSLPLVC_					0	0	0			REV__ENST00000273590.3_1_3:49452419-49452602:+|nuORF	REV__ENST00000273590.3_1_3:49452419-49452602:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2903747558594	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	1.0781	1	10329	10329		35.618	0	1	10571000	+		78731	29823	54990	55082	86788	86788					0.06244455373735036
TIVKARDKL	9	Unmodified	_TIVKARDKL_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8173828125	2	522.332216	1042.64988	-0.66117	-0.00034535	-4.4433	-0.0023209	-5.1044	-0.0026662	522.3298122644009	64.871	0.44376	64.908	64.743	65.187	0.037384					18	11	2	0	0	0	0.0242	1	7573	7573		28.081	0	1	390300			78732	4523	54991	55083	86789	86789					0.13025997639647358
TIVLCGLQDI	10	Unmodified	_TIVLCGLQDI_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MSMS	OPSCC_39_ClassI_Rep-1	1	537.7955322265625	2	537.796817	1073.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.398	1	88.398	87.898	88.898	0								0	0	0	0.26192	1	11142	11142		77.318	8.5308	1		+		78733	28972	54992	55084	86790	86790					0.045235365398411886
TIVLCGLQDI	10	Unmodified	_TIVLCGLQDI_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.79541015625	2	537.796817	1073.57908	-0.14268	-7.6734E-05	-1.8369	-0.00098787	-1.9796	-0.0010646	537.7952221023786	88.486	1.5275	88.504	88.069	89.596	0.018555					88	35	6	0	0	0	0.61732	1	11101	11101		75.043	5.4157	1	1466700	+		78734	28972	54992	55084	86791	86791					0.045235365398411886
TIVNLLKPKSL	11	Unmodified	_TIVNLLKPKSL_					0	0	0		AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant;ENSG00000165923|ENST00000525123|AGBL2;ENST00000529712.5_1_11:47690447-47736202:-|nuORF	AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	AGBL2|p.L828Wfs*8|1|0.25|ENSG00000165923|chr11:47663079-47663079|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	613.2904663085938	2	613.397556	1224.78056	-1.2904	-0.0007915	0.52518	0.00032214	-0.76518	-0.00046936	613.3992130114607	60.809	0.15503	60.633	60.559	60.714	-0.1761					5	3	2	0	0	0	0.024735	1	6796	6796		38.754	16.174	1	50034			78735	43	54993	55085	86792	86792					0.17715968567858909
TIVNVSTESK	10	Unmodified	_TIVNVSTESK_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.7991943359375	2	539.292953	1076.57135	0.14182	7.6484E-05	-3.6909	-0.0019905	-3.5491	-0.001914	539.2931230473257	88.847	0.42459	88.823	88.565	88.989	-0.024155					21	9	3	0	0	0	0.03519	1	11136	11136		41.427	7.2541	1	77490			78736	7430	54994	55086	86793	86793					0.036131005439074215
TIVPSAFNPT	10	Unmodified	_TIVPSAFNPT_					0	0	0			REV__ENSG00000156453|ENST00000287008|PCDH1	REV__ENSG00000156453|ENST00000287008|PCDH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3032836914062	2	523.779482	1045.54441	0.83464	0.00043717	0.54366	0.00028476	1.3783	0.00072193	523.7790822034473	85.39	0.70522	85.24	84.787	85.492	-0.14967					17	16	2	0	0	0	0.03519	1	10349	10349		31.53	10.583	1	110670	+		78737	25076	54995	55087	86794	86794					0.023460367233838042
TIVRAAITF	9	Unmodified	_TIVRAAITF_					0	0	0			REV__XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	REV__XKR4|p.F458Sfs*6|1|0.23|ENSG00000206579|chr8:55523645-55523645|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.3004150390625	2	496.300384	990.586216	-0.18179	-9.0224E-05	-0.29803	-0.00014791	-0.47983	-0.00023814	496.30016274047927	64.522	1.1557	64.32	63.99	65.146	-0.20254					80	28	5	0	0	0	0.51687	1	7369	7369		58.23	10.314	1	5490900	+		78738	28713	54996	55088	86795	86795					0.09054637202541471
TIVSGACCRFS	11	Unmodified	_TIVSGACCRFS_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2;nc|ENSG00000105520|Q96GM1|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2695922851562	2	572.267901	1142.52125	0.50293	0.00028781	3.1852	0.0018228	3.6881	0.0021106	572.2696616588045	84.913	1.9924	84.776	84.407	86.399	-0.13753					101	46	4	0	0	0	0.73399	1	10279	10279		61.691	10.164	1	1720100			78739	2688	54997	55089	86796	86796					-0.044310486572385344
TIVSSYEECR	10	Unmodified	_TIVSSYEECR_					0	0	0		ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.7725219726562	2	593.774071	1185.53359	-1.1899	-0.00070652	-2.484	-0.001475	-3.6739	-0.0021815	593.7724529514489	43.213	0.91634	42.987	42.675	43.591	-0.22597					61	24	4	0	0	0	1.0719	1	3924	3924		36.447	5.8779	1	1480400			78740	13892	54998	55090	86797	86797					-0.05175733713235786
TIVSSYEECR	10	Unmodified	_TIVSSYEECR_					0	0	0		ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	593.774071	1185.53359	-1.5427	-0.00091602	-2.183	-0.0012962	-3.7257	-0.0022122	593.772559911439	42.862	0.54422	42.862	42.642	43.186	0	-0.098344	0.00065103	NaN	36.447	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586270			78741	13892	54998	55090							-0.05175733713235786
TIVSSYEECR	10	Unmodified	_TIVSSYEECR_					0	0	0		ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	593.774071	1185.53359	-0.95975	-0.00056988	-2.5025	-0.0014859	-3.4623	-0.0020558	593.7724402543614	43.087	0.57964	42.948	42.667	43.247	-0.13929	-0.012883	0.00027163	NaN	36.447	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544750			78742	13892	54998	55090							-0.05175733713235786
TIVSSYEECR	10	Unmodified	_TIVSSYEECR_					0	0	0		ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	593.774071	1185.53359	0.36429	0.0002163	-4.0268	-0.002391	-3.6625	-0.0021747	593.7715740580388	43.068	0.54433	43.099	42.795	43.34	0.030827	0.13874	-0.0015385	NaN	36.447	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633150			78743	13892	54998	55090							-0.05175733713235786
TIVSSYEECR	10	Unmodified	_TIVSSYEECR_					0	0	0		ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	593.774071	1185.53359	-0.62934	-0.00037369	-2.9028	-0.0017236	-3.5321	-0.0020973	593.7722447574434	43.052	0.92204	42.939	42.614	43.536	-0.11253	-0.021465	-0.00020372	NaN	36.447	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1422100			78744	13892	54998	55090							-0.05175733713235786
TIVSSYEECR	10	Unmodified	_TIVSSYEECR_					0	0	0		ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	ENST00000416030.1_1_9:76089327-76090080:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	593.774071	1185.53359	-1.0375	-0.00061607	-2.6159	-0.0015532	-3.6534	-0.0021693	593.7724011749285	43.165	0.86058	42.928	42.525	43.385	-0.23736	-0.032884	0.000137	NaN	36.447	62	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599100			78745	13892	54998	55090							-0.05175733713235786
TIVVASTAKY	10	Unmodified	_TIVVASTAKY_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.27734375	2	526.802957	1051.59136	-0.12726	-6.7039E-05	3.3445	0.0017619	3.2172	0.0016948	527.3054978553761	94.572	0.9729	94.424	94.043	95.016	-0.14771					29	22	2	0	0	0	0.03519	1	11674	11674		18.262	0	1	89254	+		78746	27387	54999	55091	86798	86798					0.06762896274517516
TIVYKGPEP	9	Unmodified	_TIVYKGPEP_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2763977050781	2	502.276575	1002.5386	-0.44858	-0.00022531	0.6005	0.00030162	0.15192	7.6307E-05	502.27648793296123	64.976	1.248	64.742	64.216	65.464	-0.2345					83	30	4	0	0	0	0.5973	1	7408	7408		52.937	6.9645	1	1896400	+		78747	22996	55000	55092	86799	86799					0.03742938211712499
TIWNLPGY	8	Unmodified	_TIWNLPGY_					0	0	0			REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000168350|ENST00000305631|DEGS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2352600097656	2	482.25036	962.486168	0.28585	0.00013785	-4.1699	-0.0020109	-3.884	-0.0018731	482.2479957242223	34.114	0.61838	33.89	33.561	34.179	-0.22412					29	15	3	0	0	0	0.027866	1	2509	2509		19.36	0	1	386470	+		78748	26250	55001	55093	86800	86800					0.003423998687594576
TIWSAVFLN	9	Unmodified	_TIWSAVFLN_					0	0	0		ENSG00000213809|ENST00000240618|KLRK1	ENSG00000213809|ENST00000240618|KLRK1	ENSG00000213809|ENST00000240618|KLRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2960815429688	2	525.784567	1049.55458	-1.0671	-0.00056107	3.2624	0.0017153	2.1953	0.0011543	525.7864528319564	81.257	0.32001	81.126	80.897	81.217	-0.13075					13	7	2	0	0	0	0.024457	1	10056	10056		29.15	0	1	105250			78749	10524	55002	55094	86801	86801					0.03178644448621526
TKAATVTKEL	10	Unmodified	_TKAATVTKEL_					0	0	0		ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.3071899414062	2	531.313689	1060.61282	-0.28779	-0.00015291	4.4001	0.0023378	4.1123	0.0021849	531.3161897550268	97.223	1.1642	97.062	96.418	97.582	-0.16106					29	25	2	0	0	0	1.1314	1	12052	12052		27.047	0.3544	1	60324			78750	1704	55003	55095	86802	86802					0.0849428130322849
TKACHKPLL	9	Unmodified	_TKACHKPLL_					0	0	0			REV__ENST00000495619.1_1_2:183822183-183829436:-|nuORF	REV__ENST00000495619.1_1_2:183822183-183829436:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.76519775390625	2	505.794412	1009.57427	-0.62381	-0.00031552	-2.5592	-0.0012944	-3.183	-0.0016099	505.7926272078281	80.479	0.46161	80.479	80.205	80.667	0					15	10	2	0	0	0	0.024484	1	9969	9969		45.972	17.718	1	105540	+		78751	20257	55004	55096	86803	86803					0.06986697187733171
TKADYISIV	9	Unmodified	_TKADYISIV_					0	0	0			REV__ENST00000515730.1_1_8:87493985-87494276:-|nuORF	REV__ENST00000515730.1_1_8:87493985-87494276:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.3236999511719	2	505.281857	1008.54916	0.12145	6.1367E-05	1.1403	0.00057619	1.2618	0.00063756	505.282239200038	78.833	0.51523	78.602	78.346	78.861	-0.23141					19	11	2	0	0	0	0.024477	1	9435	9435		20.947	0	1	125410	+		78752	34206	55005	55097	86804	86804					0.04522920866145341
TKAEDVKKV	9	Unmodified	_TKAEDVKKV_					0	0	0		RUNDC1|p.R335W|1|0.21|ENSG00000198863|chr17:42990877-42990877|C/T|missense_variant;nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	RUNDC1|p.R335W|1|0.21|ENSG00000198863|chr17:42990877-42990877|C/T|missense_variant	RUNDC1|p.R335W|1|0.21|ENSG00000198863|chr17:42990877-42990877|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.75189208984375	2	509.300581	1016.58661	-1.0789	-0.0005495	1.3594	0.00069232	0.28044	0.00014283	509.3013893563063	43.57	0.61386	43.57	43.296	43.91	0					40	16	3	0	0	0	0.0242	1	4084	4084		28.081	6.1216	1	612400			78753	10230	55006	55098	86805	86805					0.07898012131761334
TKAELRVD	8	Unmodified	_TKAELRVD_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.77740478515625	2	466.263999	930.513445	0.27987	0.00013049	3.6119	0.0016841	3.8917	0.0018146	466.265334976402	79.88	1.1747	79.901	79.437	80.612	0.021439					47	27	3	0	0	0	0.027866	1	9935	9935		29.17	1.2878	1	234600			78754	6406	55007	55099	86806	86806					0.04540883409140406
TKAENPLTP	9	Unmodified	_TKAENPLTP_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;ENST00000475405.2_1_2:74274397-74300767:+|nuORF;nc|ENSG00000187605|O43151-3|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.26129150390625	2	485.763832	969.513111	-1.818	-0.00088311	0.16438	7.9852E-05	-1.6536	-0.00080326	485.7637461000475	38.105	0.51323	38.133	37.884	38.397	0.027275					22	14	2	0	0	0	0.024344	1	3150	3150		54.776	20.604	1	1020700			78755	9640	55008	55100	86807	86807					0.027134636892810704
TKAFRRPF	8	Unmodified	_TKAFRRPF_					0	0	0			REV__ENSG00000277161|ENST00000614443|PIGW	REV__ENSG00000277161|ENST00000614443|PIGW	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2821044921875	2	511.798343	1021.58213	-0.22035	-0.00011277	-1.3063	-0.00066859	-1.5267	-0.00078136	511.79755538613045	61.813	0.40556	61.556	61.301	61.706	-0.25725					13	9	2	0	0	0	0.027866	1	6908	6908		20.947	0	1	195260	+		78756	29202	55009	55101	86808	86808					0.07220592499515988
TKAGDPFSHA	10	Unmodified	_TKAGDPFSHA_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.83935546875	2	515.751256	1029.48796	0.1028	5.3021E-05	3.691	0.0019036	3.7938	0.0019566	515.7526731838669	57.752	0.41798	57.562	57.332	57.75	-0.19018					18	10	2	0	0	0	0.03519	1	6288	6288		32.812	8.6097	1	225570			78757	9847	55010	55102	86809	86809					-0.02560591113274313
TKAGDPFSHA	10	Unmodified	_TKAGDPFSHA_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.751256	1029.48796	-0.4078	-0.00021032	10.17	0.0052453	9.7623	0.0050349	515.7562945860836	57.365	0.56383	57.365	57.003	57.567	0	-0.13301	0.002649	NaN	19.104	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347280			78758	9847	55010	55102							-0.02560591113274313
TKAGDPFSHA	10	Unmodified	_TKAGDPFSHA_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.751256	1029.48796	0.33142	0.00017093	9.624	0.0049636	9.9554	0.0051345	515.7561169497756	57.635	0.53723	57.46	57.034	57.571	-0.1749	-0.037932	0.0020857	NaN	19.104	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237480			78759	9847	55010	55102							-0.02560591113274313
TKAGDPFSHA	10	Unmodified	_TKAGDPFSHA_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.751256	1029.48796	-0.83305	-0.00042965	10.724	0.0055307	9.8905	0.005101	515.7566499910918	57.274	0.62451	57.369	56.878	57.503	0.095306	-0.1285	0.0032199	NaN	19.104	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279180			78760	9847	55010	55102							-0.02560591113274313
TKAGDPFSHA	10	Unmodified	_TKAGDPFSHA_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.751256	1029.48796	-0.60375	-0.00031138	3.9063	0.0020147	3.3025	0.0017033	515.7529400960549	57.778	0.27959	57.601	57.396	57.675	-0.17775	0.1031	-0.0038121	NaN	19.104	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142220			78761	9847	55010	55102							-0.02560591113274313
TKAGDPFSHA	10	Unmodified	_TKAGDPFSHA_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.751256	1029.48796	-0.33408	-0.0001723	4.5423	0.0023427	4.2082	0.0021704	515.7532733068604	57.863	0.2386	57.63	57.501	57.74	-0.23363	0.13204	-0.0031561	NaN	19.104	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214670			78762	9847	55010	55102							-0.02560591113274313
TKAKGVPH	8	Unmodified	_TKAKGVPH_					0	0	0		nc|ENSG00000101624|Q8TAP6-3|CEP76;nc|ENSG00000101624|Q8TAP6-2|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF;ENSG00000101624|ENST00000262127|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	nc|ENSG00000101624|Q8TAP6-3|CEP76	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	419.1658935546875	2	419.250695	836.486836	-0.26423	-0.00011078	-0.91959	-0.00038554	-1.1838	-0.00049632	419.2500328935182	23.315	0.98397	23.135	22.929	23.913	-0.17989					28	22	2	0	0	0	0.027866	1	887	887		33.516	0	1	165750			78763	18131	55011	55103	86810	86810					0.06205239308462751
TKAKKPVK	8	Unmodified	_TKAKKPVK_					0	0	0			REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7586975097656	2	450.30547	898.596387	-0.80085	-0.00036063	0.35037	0.00015778	-0.45048	-0.00020285	450.3053983060409	44.177	0.63556	44.177	43.987	44.622	0					34	18	3	0	0	0	0.027866	1	4252	4252		16.473	9.2798	1	594380	+		78764	20860	55012	55104	86811	86811					0.1430324492780528
TKAKVARLV	9	Unmodified	_TKAKVARLV_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2803039550781	2	493.329476	984.6444	1.048	0.00051701	-1.1485	-0.0005666	-0.10053	-4.9595E-05	493.3287296883452	25.147	0.43287	24.975	24.643	25.076	-0.17151					19	9	3	0	0	0	0.024495	1	1110	1110		42.396	16.946	1	135870	+		78765	21433	55013	55105	86812	86812					0.1514631884784876
TKAKVEAPL	9	Unmodified	_TKAKVEAPL_					0	0	0			REV__ENSG00000011451|ENST00000673675|WIZ	REV__ENSG00000011451|ENST00000673675|WIZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7967529296875	2	478.792392	955.570232	-0.12999	-6.2236E-05	0.16593	7.9446E-05	0.035944	1.721E-05	478.7923162471154	45.62	1.0568	45.664	45.377	46.433	0.043877					74	30	4	0	0	0	0.31037	1	4418	4418		74.255	20.904	1	6572200	+		78766	19929	55014	55106	86813	86813					0.09066930965661868
TKALAGKL	8	Unmodified	_TKALAGKL_					0	0	0		nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000491536.5_1_1:12024755-12035393:+|nuORF;ENSG00000083444|ENST00000196061|PLOD1	nc|ENSG00000083444|Q02809-2|PLOD1	nc|ENSG00000083444|Q02809-2|PLOD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	401.26190185546875	2	401.263271	800.511988	0.074199	2.9773E-05	-3.4444	-0.0013821	-3.3702	-0.0013523	401.26182084106796	85.549	0.80428	85.412	85.07	85.875	-0.13753					44	18	3	0	0	0	1.0574	1	10347	10347		19.997	1.6724	1	868160			78767	18096	55015	55107	86814	86814					0.10375294111042876
TKALASRTLA	10	Unmodified	_TKALASRTLA_					0	0	0		ENSG00000165028|ENST00000374762|NIPSNAP3B;ENST00000461177.1_1_9:107526521-107531179:+|nuORF	ENSG00000165028|ENST00000374762|NIPSNAP3B	ENSG00000165028|ENST00000374762|NIPSNAP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3140258789062	2	516.314023	1030.61349	0.62813	0.00032431	-1.6446	-0.00084913	-1.0165	-0.00052482	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	1.0719	1	12199	12199		36.447	0.82846	1	32395000			78768	7357	55016	55108	86815	86815					0.0994112074295117
TKALGALAV	9	Unmodified	_TKALGALAV_					0	0	0			REV__nc|ENSG00000117519|Q15417-2|CNN3	REV__nc|ENSG00000117519|Q15417-2|CNN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	422.2688903808594	2	422.268553	842.522553	0.79967	0.00033768	-0.37735	-0.00015934	0.42233	0.00017834	422.26825247234774	20.81	0.44256	20.879	20.661	21.103	0.068901					18	8	3	0	0	0	0.75397	1	546	546		42.396	1.8235	1	115110	+		78769	22350	55017	55109	86816	86816					0.09499276765461673
TKALGALAV	9	Unmodified	_TKALGALAV_					0	0	0			REV__nc|ENSG00000117519|Q15417-2|CNN3	REV__nc|ENSG00000117519|Q15417-2|CNN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	422.268553	842.522553	-1.1293	-0.00047688	1.627	0.00068705	0.49771	0.00021017	422.2691024953951	20.857	0.68445	20.857	20.609	21.293	0	-0.042886	0.00085731	NaN	42.396	28	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96655	+		78770	22350	55017	55109							0.09499276765461673
TKALGALAV	9	Unmodified	_TKALGALAV_					0	0	0			REV__nc|ENSG00000117519|Q15417-2|CNN3	REV__nc|ENSG00000117519|Q15417-2|CNN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	422.268553	842.522553	-0.45828	-0.00019352	1.027	0.00043367	0.56873	0.00024016	422.26882438976924	20.997	0.48661	20.907	20.72	21.207	-0.090092	0.0076594	0.00035057	NaN	42.396	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95359	+		78771	22350	55017	55109							0.09499276765461673
TKALGALAV	9	Unmodified	_TKALGALAV_					0	0	0			REV__nc|ENSG00000117519|Q15417-2|CNN3	REV__nc|ENSG00000117519|Q15417-2|CNN3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	422.268553	842.522553	0.79967	0.00033768	-0.37735	-0.00015934	0.42233	0.00017834	422.26825247234774	20.81	0.44256	20.879	20.661	21.103	0.068901	-0.020512	-0.00083546	NaN	42.396	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115110	+		78772	22350	55017	55109							0.09499276765461673
TKALGALAV	9	Unmodified	_TKALGALAV_					0	0	0			REV__nc|ENSG00000117519|Q15417-2|CNN3	REV__nc|ENSG00000117519|Q15417-2|CNN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.268553	842.522553	0.47563	0.00020084	-0.86912	-0.000367	-0.39349	-0.00016616	422.2683431313574	21.146	0.39294	20.955	20.735	21.128	-0.19072	0.055738	-0.0012508	NaN	42.396	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27514	+		78773	22350	55017	55109							0.09499276765461673
TKALKELLP	9	Unmodified	_TKALKELLP_					0	0	0			REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.76806640625	2	506.823692	1011.63283	-0.22357	-0.00011331	0.40933	0.00020746	0.18576	9.4148E-05	506.82376476733606	60.476	0.99355	60.27	59.975	60.968	-0.20599					52	24	4	0	0	0	0.024344	1	6825	6825		30.318	7.2752	1	2144500	+		78774	19248	55018	55110	86817	86817					0.1274807703384795
TKALKELLP	9	Unmodified	_TKALKELLP_					0	0	0			REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7680969238281	2	506.823692	1011.63283	-0.72339	-0.00036663	2.469	0.0012513	1.7456	0.00088471	507.32642192717964	61.294	0.28956	61.037	60.927	61.217	-0.25725					10	6	2	0	0	0	0.024344	1	6830	6830		54.776	32.816	1	31923	+		78775	19248	55018	55110	86818	86818					0.1274807703384795
TKALKELLP	9	Unmodified	_TKALKELLP_					0	0	0			REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.823692	1011.63283	0.002399	1.2159E-06	-1.6357	-0.00082903	-1.6333	-0.00082781	506.82325961605017	61.249	0.22413	61.249	61.07	61.295	0	0.10607	-0.001884	NaN	69.628	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31310	+		78776	19248	55018	55110							0.1274807703384795
TKALKLFED	9	Unmodified	_TKALKLFED_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7842407226562	2	532.802957	1063.59136	-0.94553	-0.00050378	-2.525	-0.0013453	-3.4705	-0.0018491	532.8017730454201	45.667	0.20116	45.516	45.343	45.544	-0.15157					10	5	2	0	0	0	0.024484	1	4429	4429		23.523	8.6578	1	1084100			78777	6083	55019	55111	86819	86819					0.062108962745242025
TKALPLPE	8	Unmodified	_TKALPLPE_					0	0	0		ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7795104980469	2	434.760561	867.506569	-0.78643	-0.00034191	4.1785	0.0018166	3.3921	0.0014747	434.7628543531769	44.447	0.24532	44.203	44.045	44.291	-0.2444					11	6	2	0	0	0	0.027866	1	4122	4122		11.511	0	1	123150			78778	5810;87	55020	55112	86820	86820					0.06751570528581397
TKALPLRIT	9	Unmodified	_TKALPLRIT_					0	0	0			REV__nc|ENSG00000047936|P08922|ROS1	REV__nc|ENSG00000047936|P08922|ROS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8296203613281	2	506.829309	1011.64407	0.35575	0.00018031	-2.9904	-0.0015156	-2.6346	-0.0013353	506.82766891796035	17.443	0.36868	17.301	17.134	17.503	-0.14278					18	7	3	0	0	0	0.96322	1	176	176		27.882	3.6795	1	302900	+		78779	20134	55021	55113	86821	86821					0.1387089912798274
TKANCFMLS	9	Unmodified	_TKANCFMLS_					0	0	0			REV__IL16|p.L25F|1|0.28|ENSG00000172349|chr15:81225472-81225472|C/T|missense_variant	REV__IL16|p.L25F|1|0.28|ENSG00000172349|chr15:81225472-81225472|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.3031921386719	2	507.740988	1013.46742	0.034124	1.7326E-05	0.12452	6.3222E-05	0.15864	8.0548E-05	507.74099672132076	57.006	0.71813	56.782	56.386	57.104	-0.2248					29	18	2	0	0	0	0.024405	1	6210	6210		20.947	0	1	584460	+		78780	36148	55022	55114	86822	86822					-0.0387722108895332
TKAPIFLPTP	10	Unmodified	_TKAPIFLPTP_					0	0	0			REV__ENSG00000130363|ENST00000367069|RSPH3	REV__ENSG00000130363|ENST00000367069|RSPH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.3082885742188	2	542.823692	1083.63283	-1.4628	-0.00079402	2.3337	0.0012668	0.8709	0.00047274	542.8253557531174	80.382	0.33902	80.403	80.189	80.528	0.021439					9	7	2	0	0	0	0.03519	1	9882	9882		19.104	0	1	32910	+		78781	23107	55023	55115	86823	86823					0.09436077033842594
TKARDHTP	8	Unmodified	_TKARDHTP_					0	0	0		nc|ENSG00000214447|A6NFU0|FAM187A	nc|ENSG00000214447|A6NFU0|FAM187A	nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.7506103515625	2	463.246141	924.477728	-0.045554	-2.1103E-05	-4.3215	-0.0020019	-4.3671	-0.002023	463.24414850387365	42.042	0.70033	41.919	41.68	42.38	-0.12299					26	18	2	0	0	0	0.027866	1	3826	3826		20.947	1.587	1	184170			78782	18716	55024	55116	86824	86824					0.012468459521414843
TKASDPLKIL	10	Unmodified	_TKASDPLKIL_					0	0	0		EXOC4|p.T554A|1|0.44|ENSG00000131558|chr7:133817470-133817470|A/G|missense_variant	EXOC4|p.T554A|1|0.44|ENSG00000131558|chr7:133817470-133817470|A/G|missense_variant	EXOC4|p.T554A|1|0.44|ENSG00000131558|chr7:133817470-133817470|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8023681640625	2	543.331882	1084.64921	-0.90801	-0.00049335	0.11419	6.2045E-05	-0.79381	-0.0004313	543.3318392788095	56.794	1.0765	56.891	56.246	57.322	0.097897					40	18	4	0	0	0	0.03519	1	6266	6266		32.751	2.4328	1	1077400			78783	17628	55025	55117	86825	86825					0.11027158199954101
TKAVLLVIL	9	Unmodified	_TKAVLLVIL_					0	0	0			REV__ENST00000485081.5_1_1:182852363-182852468:+|nuORF	REV__ENST00000485081.5_1_1:182852363-182852468:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3131103515625	2	485.338978	968.663404	-0.19512	-9.4701E-05	3.2064	0.0015562	3.0112	0.0014615	485.33931758528337	40.254	0.37403	40.142	39.904	40.278	-0.11222					13	9	2	0	0	0	0.024209	1	3523	3523		47.657	0	1	68721	+		78784	33554	55026	55118	86826	86826					0.1778185541890025
TKAVLVLTVV	10	Unmodified	_TKAVLVLTVV_					0	0	0			REV__ENST00000052569.10_2_6:117884526-117888073:-|nuORF	REV__ENST00000052569.10_2_6:117884526-117888073:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7691040039062	2	521.847167	1041.67978	-0.26764	-0.00013967	-3.3191	-0.0017321	-3.5867	-0.0018717	521.8448838633707	55.901	0.52963	55.901	55.61	56.139	0					26	14	3	0	0	0	0.03519	1	6158	6158		62.107	22.855	1	281640	+		78785	29265	55027	55119	86827	86827					0.16060936584972296
TKCAKIKQG	9	Unmodified	_TKCAKIKQG_					0	0	0			REV__ENSG00000100055|ENST00000248901|CYTH4	REV__ENSG00000100055|ENST00000248901|CYTH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2496643066406	2	488.784044	975.553536	-0.67722	-0.00033101	0.55693	0.00027222	-0.12029	-5.8796E-05	488.7839837517732	33.383	0.63834	33.218	32.879	33.517	-0.16565					30	15	3	0	0	0	0.024381	1	2379	2379		29.15	3.6994	1	474260	+		78786	21040	55028	55120	86828	86828					0.0647810680807197
TKCNMKRE	8	Unmodified	_TKCNMKRE_					0	0	0			REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3109130859375	2	505.249511	1008.48447	-0.60722	-0.0003068	3.5271	0.0017821	2.9199	0.0014753	505.25117421964427	34.744	1.1048	34.794	34.518	35.623	0.050255					43	28	2	0	0	0	0.027866	1	2660	2660		39.253	12.56	1	2984700	+		78787	34076	55029	55121	86829	86829					-0.019433004831626022
TKCYKKFK	8	Unmodified	_TKCYKKFK_					0	0	0		ENST00000509683.5_1_4:42077786-42080244:+|nuORF	ENST00000509683.5_1_4:42077786-42080244:+|nuORF	ENST00000509683.5_1_4:42077786-42080244:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2692260742188	2	523.296788	1044.57902	-0.30584	-0.00016005	2.5944	0.0013576	2.2885	0.0011976	523.2977637164003	42.386	0.59744	42.263	41.82	42.417	-0.12299					26	15	3	0	0	0	0.027866	1	3749	3749		54.776	25.627	1	276730			78788	15807	55030	55122	86830	86830					0.05851581330489353
TKDATYVN	8	Unmodified	_TKDATYVN_					0	0	0		EYS|p.E509K|1|0.08|ENSG00000188107|chr6:65344112-65344112|C/T|missense_variant	EYS|p.E509K|1|0.08|ENSG00000188107|chr6:65344112-65344112|C/T|missense_variant	EYS|p.E509K|1|0.08|ENSG00000188107|chr6:65344112-65344112|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.2369689941406	2	456.227082	910.439611	-0.85443	-0.00038981	-3.553	-0.001621	-4.4075	-0.0020108	456.2223894507094	43.717	0.2936	43.48	43.385	43.679	-0.23736					16	7	3	0	0	0	0.027866	1	4003	4003		19.997	0	1	90408			78789	17630	55031	55123	86831	86831					-0.01919084753194511
TKDEIHVFG	9	Unmodified	_TKDEIHVFG_					0	0	0			REV__ENSG00000173914|ENST00000310046|RBM4B	REV__ENSG00000173914|ENST00000310046|RBM4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2692260742188	2	523.269281	1044.52401	-0.33393	-0.00017473	-0.46377	-0.00024268	-0.79769	-0.00041741	523.2691423859654	41.856	1.2225	41.733	41.267	42.49	-0.12299					91	32	4	0	0	0	0.6504	1	3749	3749		49.442	1.7842	1	10971000	+		78790	26820	55032	55124	86832	86832					0.0035286606357658457
TKDFLRFTAF	10	Unmodified	_TKDFLRFTAF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|272|3|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|272|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.21221923828125	3	415.892396	1244.65536	0.015764	6.556E-06	2.3926	0.00099508	2.4084	0.0010016	416.22753189767826	27.687	0.38323	27.687	27.616	27.999	0					13	9	2	0	0	0	0.03519	1	1563	1563		14.694	6.2864	1	34882	+		78791	36294	55033	55125	86833	86833					0.0428167643146935
TKDFLRFTAF	10	Unmodified	_TKDFLRFTAF_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|272|3|anti-sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|272|3|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	415.892396	1244.65536	-0.11894	-4.9466E-05	7.8812	0.0032777	7.7623	0.0032283	415.89469669892526	27.707	0.11432	27.694	27.608	27.722	-0.012983	0.0033517	0.0036248	NaN	28.577	6	2	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23242	+		78792	36294	55033	55125							0.0428167643146935
TKDFVVFAD	9	Unmodified	_TKDFVVFAD_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.2689819335938	2	521.266207	1040.51786	0.27213	0.00014185	1.0705	0.00055803	1.3427	0.00069989	521.2655029081959	75.534	0.38572	75.358	75.273	75.659	-0.17548					14	9	2	0	0	0	0.024374	1	8921	8921		32.812	0	1	104510	+		78793	28953	55034	55126	86834	86834					-0.0007765216794268781
TKDKHSSRL	9	Unmodified	_TKDKHSSRL_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2960205078125	2	536.298904	1070.58326	-0.81002	-0.00043441	-0.13845	-7.4253E-05	-0.94848	-0.00050867	536.2985380303594	74.644	2.1297	74.654	74.439	76.568	0.0096512					100	54	2	0	0	0	0.247	1	9060	9060		82.75	9.8712	1	2543300			78794	3515	55035	55127	86835	86835					0.050787620777555276
TKDKTFGRN	9	Unmodified	_TKDKTFGRN_					0	0	0			REV__ENST00000474020.5_1_1:47118240-47133739:-|nuORF	REV__ENST00000474020.5_1_1:47118240-47133739:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7887573242188	2	533.78563	1065.55671	0.461	0.00024607	3.0643	0.0016357	3.5253	0.0018818	533.7871441592763	78.22	0.65277	78.028	77.564	78.216	-0.1921					44	15	4	0	0	0	0.48817	1	9648	9648		60.118	2.307	1	1979900	+		78795	22699	55036	55128	86836	86836					0.026550731864290356
TKDKTHVF	8	Unmodified	_TKDKTHVF_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2662658691406	2	488.266542	974.51853	-0.096894	-4.731E-05	-0.40527	-0.00019788	-0.50217	-0.00024519	488.26634316283304	19.764	1.1694	19.603	19.331	20.501	-0.16079					54	23	4	0	0	0	0.2822	2	460	460;472		119.56	2.6532	1	2127500	+		78796	37546	55037	55129	86837;86838	86837					0.030251872717599326
TKDKTHVF	8	Unmodified	_TKDKTHVF_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.2662048339844	2	488.266542	974.51853	1.0291	0.0005025	-1.4884	-0.00072673	-0.45925	-0.00022424	488.2658231759388	19.828	0.77753	19.628	19.405	20.183	-0.2001					44	15	4	0	0	0	0.2822	1	460	460		119.56	13.142	1	2122100	+		78797	37546	55037	55129	86839	86839					0.030251872717599326
TKDKTHVF	8	Unmodified	_TKDKTHVF_					0	0	0			REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	REV__sp|P03219|TRM3_EBVB9Tripartiteterminasesubunit3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRM3PE=1SV=2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.2662048339844	2	488.266542	974.51853	1.234	0.00060251	-1.5777	-0.00077032	-0.34368	-0.00016781	488.2657297196723	19.811	0.59101	19.577	19.325	19.916	-0.23345					30	11	4	0	0	0	0.42327	1	441	441		94.006	0	1	833970	+		78798	37546	55037	55129	86840	86840					0.030251872717599326
TKDNYCIL	8	Unmodified	_TKDNYCIL_					0	0	0		FAM9A|p.I322L|1|0.3|ENSG00000183304|chrX:8791346-8791346|T/G|missense_variant	FAM9A|p.I322L|1|0.3|ENSG00000183304|chrX:8791346-8791346|T/G|missense_variant	FAM9A|p.I322L|1|0.3|ENSG00000183304|chrX:8791346-8791346|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2720642089844	2	485.239135	968.463718	1.0905	0.00052917	1.1644	0.00056499	2.2549	0.0010942	485.24017123155613	63.627	0.54381	63.627	63.447	63.99	0					17	14	2	0	0	0	0.027866	1	7460	7460		31.955	0	1	54470			78799	17635	55038	55130	86841	86841					-0.02177567591161278
TKDQHVQMQP	10	Unmodified	_TKDQHVQMQP_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.2452697753906	3	404.532762	1210.57646	1.6083	0.00065061	-0.95206	-0.00038514	0.65623	0.00026547	404.86708480064874	31.907	0.48538	31.976	31.646	32.131	0.06896					13	11	2	0	0	0	0.03519	1	2125	2125		32.751	8.5187	1	51603	+		78800	26587	55039	55131	86842	86842					-0.02040918865122876
TKDRRLSKK	9	Unmodified	_TKDRRLSKK_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.76708984375	2	566.351471	1130.68839	-0.39711	-0.0002249	-3.0482	-0.0017263	-3.4453	-0.0019512	566.3495559883345	40.931	0.53978	40.796	40.597	41.137	-0.13553					16	13	2	0	0	0	0.024409	1	3588	3588		58.23	24.057	1	146850			78801	3722	55040	55132	86843	86843					0.12827303274184487
TKDSSGTLL	9	Unmodified	_TKDSSGTLL_					0	0	0			REV__ENSG00000123977|ENST00000309931|DAW1	REV__ENSG00000123977|ENST00000309931|DAW1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.27362060546875	2	461.248015	920.481476	-0.32935	-0.00015191	0.64403	0.00029706	0.31468	0.00014514	461.248368529795	48.594	0.69417	48.594	48.378	49.072	0					37	19	3	0	0	0	0.024374	1	4953	4953		40.778	14.085	1	275030	+		78802	22721	55041	55133	86844	86844					0.01805470935357789
TKDTLKIG	8	Unmodified	_TKDTLKIG_					0	0	0			REV__ENSG00000119900|ENST00000370435|OGFRL1	REV__ENSG00000119900|ENST00000370435|OGFRL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.263427734375	2	438.263468	874.512382	-0.26291	-0.00011522	0.67584	0.00029619	0.41293	0.00018097	438.2635997660627	40.938	1.3336	40.71	40.366	41.699	-0.2278					73	34	3	0	0	0	1.0574	1	3569	3569		26.693	1.1189	1	1881500	+		78803	22496	55042	55134	86845	86845					0.07010669040244011
TKDVVLQW	8	Unmodified	_TKDVVLQW_					0	0	0		ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;CHST10-MAP4K4|4|fusion;CHST10-MAP4K4|3|fusion;CHST10-MAP4K4|1|fusion;CHST10-MAP4K4|2|fusion;CHST10-MAP4K4|5|fusion;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;TNIK|p.R1270W|1|0.11|ENSG00000154310|chr3:171066627-171066627|G/A|missense_variant;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK	ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7599182128906	2	494.776742	987.538931	-1.0067	-0.00049811	0.31731	0.000157	-0.68943	-0.00034112	494.7785128673438	46.245	0.35638	46.094	45.888	46.244	-0.15156					14	9	2	0	0	0	0.027866	1	4535	4535		60.972	6.1956	1	83169			78804	6402;1444	55043	55135	86846	86846					0.0446635793156247
TKDWTQKWN	9	Unmodified	_TKDWTQKWN_					0	0	0		ENSG00000159433|ENST00000290607|STARD9;ENST00000568493.1_1_15:42955968-42961628:+|nuORF;ENST00000564158.5_1_15:42955968-42961628:+|nuORF	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	604.7865600585938	2	603.798737	1205.58292	0.3033	0.00018313	-0.45375	-0.00027397	-0.15045	-9.0839E-05	603.7978668836688	74.356	1.0585	74.173	74.005	75.064	-0.18279					34	24	2	0	0	0	0.024523	1	8739	8739		15.642	0	1	89103			78805	6747	55044	55136	86847	86847					-0.011646576420844212
TKEAGSVSL	9	Unmodified	_TKEAGSVSL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.2698059082031	2	446.242732	890.470912	-0.38006	-0.0001696	-4.3458	-0.0019393	-4.7259	-0.0021089	446.2407495165494	65.545	0.92886	65.272	64.639	65.568	-0.27282					41	25	3	0	0	0	0.024323	1	7731	7731		20.947	4.4738	1	1097000			78806	10033	55045	55137	86848	86848					0.021294882809115734
TKEAGSVSL	9	Unmodified	_TKEAGSVSL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	446.242732	890.470912	-1.4074	-0.00062804	-7.6843	-0.0034291	-9.0917	-0.0040571	446.23835289790776	65.367	0.36741	65.164	65.023	65.39	-0.20254	-0.053749	-0.0029057	NaN	9.7057	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60590			78807	10033	55045	55137							0.021294882809115734
TKEAPLQT	8	Unmodified	_TKEAPLQT_					0	0	0			REV__ENSG00000187166|ENST00000335017|H1-7	REV__ENSG00000187166|ENST00000335017|H1-7	MSMS	OPSCC_40_ClassI_Rep-2	5	444.24542236328125	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.87	1	102.75	102.25	103.25	-0.12783								0	0	0	0.60928	1	12798	12798		47.657	3.5405	1		+		78808	27920	55046	55138	86849	86849					0.028217921435157223
TKEATKVR	8	Unmodified	_TKEATKVR_					0	0	0			REV__ENST00000483926.5_1_1:27668800-27676624:+|nuORF	REV__ENST00000483926.5_1_1:27668800-27676624:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.753173828125	2	466.779816	931.545079	-0.030124	-1.4061E-05	3.0294	0.0014141	2.9993	0.0014	466.7811516359787	37.355	0.47394	37.292	37.014	37.488	-0.063385					17	12	2	0	0	0	0.027866	1	3051	3051		20.947	0	1	86095	+		78809	33524	55047	55139	86850	86850					0.07656876163105153
TKEDLELINK	10	Unmodified	_TKEDLELINK_					0	0	0		ENST00000537237.5_1_12:110017641-110029070:+|nuORF;ENSG00000110921|ENST00000228510|MVK;ENST00000545774.5_1_12:110013906-110024605:+|nuORF;ENST00000545516.1_1_12:110019284-110024605:+|nuORF	ENST00000537237.5_1_12:110017641-110029070:+|nuORF	ENST00000537237.5_1_12:110017641-110029070:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.5363464355469	3	401.559082	1201.65542	0.47879	0.00019226	1.1967	0.00048054	1.6755	0.00067281	401.55959483860204	32.956	0.65147	32.725	32.462	33.114	-0.23107					28	15	3	0	0	0	0.03519	1	2285	2285		28.577	3.4507	1	357650			78810	3076	55048	55140	86851	86851					0.06265631640803804
TKEEEKVPAG	10	Unmodified	_TKEEEKVPAG_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.782470703125	2	544.285128	1086.5557	-1.6283	-0.00088625	-2.2136	-0.0012048	-3.8419	-0.0020911	544.2836174785085	38.238	0.3563	38.238	38.199	38.555	0					11	9	2	0	0	0	0.03519	1	3241	3241		51.193	0	1	877310			78811	6676	55049	55141	86852	86852					0.015888140268771167
TKEGLIGLL	9	Unmodified	_TKEGLIGLL_					0	0	0		TSFM-OS9|6|fusion;TSFM-OS9|8|fusion;TSFM-OS9|2|fusion;TSFM-OS9|4|fusion;TSFM-OS9|7|fusion;TSFM-OS9|5|fusion;TSFM-OS9|3|fusion;TSFM-OS9|1|fusion;nc|ENSG00000123297|P43897-2|TSFM;ENSG00000123297|ENST00000652027|TSFM;nc|ENSG00000123297|P43897-4|TSFM;nc|ENSG00000123297|P43897-3|TSFM	TSFM-OS9|6|fusion	TSFM-OS9|6|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2716369628906	2	472.294768	942.574983	0.19548	9.2324E-05	-0.30112	-0.00014222	-0.10564	-4.9893E-05	472.29456751299625	34.314	1.6062	34.09	33.803	35.409	-0.22412					97	40	4	0	0	0	0.024381	1	2622	2622		21.96	0	1	14155000			78812	38111	55050	55142	86853	86853					0.10139815108436778
TKEISLLDL	9	Unmodified	_TKEISLLDL_					0	0	0		nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2;ENST00000543938.5_1_15:83328314-83349061:-|nuORF	nc|ENSG00000103723|Q13367-3|AP3B2	nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3080444335938	2	516.30279	1030.59103	-0.71598	-0.00036966	0.32449	0.00016754	-0.39149	-0.00020213	516.3030759355125	62.726	0.68765	62.789	62.122	62.81	0.062767					22	17	2	0	0	0	0.024209	1	7207	7207		56.721	0	1	3160500			78813	2525	55051	55143	86854	86854					0.07695476554658853
TKELLAVLL	9	Unmodified	_TKELLAVLL_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3135070800781	2	500.326068	998.637583	-0.20714	-0.00010364	4.125	0.0020639	3.9179	0.0019602	500.32814976595944	76.131	0.72523	76.131	75.994	76.719	0					24	17	3	0	0	0	0.02435	1	9376	9376		34.173	7.4796	1	764630	+		78814	27289	55052	55144	86855	86855					0.1382096117661149
TKEMELPPE	9	Unmodified	_TKEMELPPE_					0	0	0		ENSG00000185482|ENST00000332782|STAC3	ENSG00000185482|ENST00000332782|STAC3	ENSG00000185482|ENST00000332782|STAC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.8163452148438	2	537.262807	1072.51106	-0.80892	-0.0004346	4.1212	0.0022142	3.3123	0.0017796	537.2649922979301	65.301	0.66167	65.338	65.045	65.706	0.037384					27	18	2	0	0	0	0.024457	1	7704	7704		21.96	0	1	524440			78815	9443	55053	55145	86856	86856					-0.02229333110835796
TKESTVPGR	9	Unmodified	_TKESTVPGR_					0	0	0			REV__ENSG00000185730|ENST00000330143|ZNF696	REV__ENSG00000185730|ENST00000330143|ZNF696	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7669372558594	2	487.766906	973.519259	-0.55557	-0.00027099	0.91183	0.00044476	0.35626	0.00017377	487.76696556381216	28.4	0.75834	28.396	28.117	28.875	-0.0042019					29	17	2	0	0	0	0.6238	1	1647	1647		51.193	1.1682	1	1484000	+		78816	27789	55054	55146	86857	86857					0.031439819208117115
TKEVGEQYSA	10	Unmodified	_TKEVGEQYSA_					0	0	0		ENST00000561119.5_1_15:91145597-91161317:+|nuORF	ENST00000561119.5_1_15:91145597-91161317:+|nuORF	ENST00000561119.5_1_15:91145597-91161317:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2633666992188	2	556.266936	1110.51932	-0.96965	-0.00053939	4.2868	0.0023846	3.3171	0.0018452	556.2692477420024	44.739	0.58505	44.639	44.392	44.977	-0.099445					23	14	2	0	0	0	0.03519	1	4164	4164		37.812	0	1	471150			78817	16815	55055	55147	86858	86858					-0.03152062869844485
TKEVKVIVL	9	Unmodified	_TKEVKVIVL_					0	0	0		ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8388671875	2	514.839342	1027.66413	-0.67642	-0.00034825	0.19895	0.00010243	-0.47747	-0.00024582	514.839388077999	57.258	0.89933	57.091	56.786	57.686	-0.1672					86	23	5	0	0	0	0.12914	1	6283	6283		104.06	0	1	12877000			78818	3006	55056	55148	86859	86859					0.15140650067951356
TKEVNSGFFY	10	Unmodified	_TKEVNSGFFY_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.287841796875	2	596.287671	1190.56079	-0.61803	-0.00036852	0.56952	0.0003396	-0.048506	-2.8924E-05	596.287909898755	56.639	1.0192	56.472	56.124	57.143	-0.1672					70	26	4	0	0	0	0.2261	2	6138	6138;6163		117.81	0	1	3594600			78819	18273	55057	55149	86860;86861	86860					-0.026868821105153984
TKEVNSGFFY	10	Unmodified	_TKEVNSGFFY_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.287841796875	2	596.287671	1190.56079	-0.35075	-0.00020915	0.2535	0.00015116	-0.097248	-5.7988E-05	596.2876919123815	56.716	0.82544	56.514	56.171	56.996	-0.20209					64	21	5	0	0	0	0.3202	3	6160	6147;6160;6173		106.88	0	1	4142500			78820	18273	55057	55149	86862;86863;86864	86863					-0.026868821105153984
TKEVNSGFFY	10	Unmodified	_TKEVNSGFFY_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.2872924804688	2	596.287671	1190.56079	0.0265	1.5802E-05	-0.13605	-8.1125E-05	-0.10955	-6.5323E-05	596.2874013398482	56.745	0.91511	56.52	56.189	57.104	-0.2248					72	23	5	0	0	0	0.13984	2	6150	6138;6150		128.6	0	1	4050300			78821	18273	55057	55149	86865;86866	86866					-0.026868821105153984
TKFAHPYL	8	Unmodified	_TKFAHPYL_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.25	2	488.766178	975.517802	-0.65122	-0.00031829	-2.0838	-0.0010185	-2.735	-0.0013368	488.76529602964075	25.767	0.63754	25.732	25.515	26.152	-0.034395					25	14	2	0	0	0	0.027866	1	1263	1263		55.504	11.387	1	96532	+		78822	19887	55058	55150	86867	86867					0.029063926226854164
TKFEAKIGQ	9	Unmodified	_TKFEAKIGQ_					0	0	0		nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9;ENST00000583834.5_1_17:72767865-72768287:-|nuORF	nc|ENSG00000109065|Q9BTE0-2|NAT9	nc|ENSG00000109065|Q9BTE0-2|NAT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2794799804688	2	511.287474	1020.5604	1.0337	0.00052852	-4.4464	-0.0022734	-3.4127	-0.0017449	511.28496511958343	19.109	0.4445	19.109	18.823	19.268	0					10	8	2	0	0	0	0.024466	1	359	359		24.519	0	1	25001			78823	2958	55059	55151	86868	86868					0.05093742960286818
TKFIGQAIV	9	Unmodified	_TKFIGQAIV_					0	0	0			REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	REV__TBCK|p.C702Sfs*2|1|0.08|ENSG00000145348|chr4:106171218-106171225|AGTCCAAC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7944641113281	2	488.794935	975.575317	-0.82116	-0.00040138	0.24127	0.00011793	-0.57989	-0.00028345	488.79466132475267	62.917	0.89745	62.678	62.451	63.349	-0.23926					38	22	3	0	0	0	0.35646	1	7327	7327		68.787	14.011	1	4593400	+		78824	24400	55060	55152	86869	86869					0.0865523482827939
TKFNCKLT	8	Unmodified	_TKFNCKLT_					0	0	0			REV__ENSG00000117154|ENST00000251296|IGSF21	REV__ENSG00000117154|ENST00000251296|IGSF21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7624206542969	2	477.757495	953.500437	2.2228	0.001062	0.21216	0.00010136	2.435	0.0011633	477.7563246361742	63.969	0.57183	63.969	63.666	64.238	0					31	15	3	0	0	0	0.027866	1	7501	7501		30.504	23.31	1	238160	+		78825	22332	55061	55153	86870	86870					0.021827290253895626
TKFPAEQYY	9	Unmodified	_TKFPAEQYY_					0	0	0		nc|ENSG00000211460|Q15631-2|TSN;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN;ENST00000490104.5_1_2:122514991-122522940:+|nuORF	nc|ENSG00000211460|Q15631-2|TSN	nc|ENSG00000211460|Q15631-2|TSN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.197021484375	2	573.776939	1145.53933	-0.14012	-8.0397E-05	-2.4597	-0.0014113	-2.5999	-0.0014917	573.7745798564902	32.962	0.16707	32.731	32.627	32.794	-0.23107					5	3	2	0	0	0	0.023817	1	2314	2314		71.296	7.0884	1	37932			78826	10478	55062	55154	86871	86871					-0.027622671392464326
TKFPQNLSK	9	Unmodified	_TKFPQNLSK_					0	0	0		ENST00000376062.6_1_20:30253430-30253547:-|nuORF	ENST00000376062.6_1_20:30253430-30253547:-|nuORF	ENST00000376062.6_1_20:30253430-30253547:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7894287109375	2	531.800749	1061.58694	-0.41395	-0.00022014	0.29684	0.00015786	-0.1171	-6.2275E-05	531.8004881446374	64.234	0.59072	63.978	63.755	64.346	-0.25563					27	14	2	0	0	0	0.024466	1	7302	7302		12.812	0	1	942580			78827	13174	55063	55155	86872	86872					0.058614318515992636
TKFSFAFVD	9	Unmodified	_TKFSFAFVD_					0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2770385742188	2	531.26875	1060.52295	-1.0096	-0.00053638	-2.255	-0.001198	-3.2647	-0.0017344	531.2673979072766	58.158	0.93972	57.983	57.684	58.623	-0.1749					51	25	3	0	0	0	0.024025	1	6558	6558		71.877	43.995	1	3628900	+		78828	21763	55064	55156	86873	86873					-0.004893483053365344
TKFSPLPL	8	Unmodified	_TKFSPLPL_					0	0	0		ENST00000251607.10_1_3:3189840-3189927:+|nuORF	ENST00000251607.10_1_3:3189840-3189927:+|nuORF	ENST00000251607.10_1_3:3189840-3189927:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.7686767578125	2	451.770929	901.527304	-0.19642	-8.8737E-05	-4.393	-0.0019846	-4.5894	-0.0020734	451.76888848152095	27.443	1.1052	27.287	26.93	28.035	-0.15664					65	26	4	0	0	0	0.6248	1	1477	1477		73.975	5.1879	1	4352800			78829	11354	55065	55157	86874	86874					0.07260160908231228
TKFVIDEHP	9	Unmodified	_TKFVIDEHP_					0	0	0			REV__STX11|p.E36K|1|0.12|ENSG00000135604|chr6:144186733-144186733|G/A|missense_variant	REV__STX11|p.E36K|1|0.12|ENSG00000135604|chr6:144186733-144186733|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.30810546875	2	543.284931	1084.55531	-0.96666	-0.00052517	1.515	0.00082306	0.5483	0.00029789	543.2857331998972	79.605	0.90727	79.624	79.07	79.977	0.018677					24	21	2	0	0	0	0.024466	1	9844	9844		47.657	14.845	1	128750	+		78830	37587	55066	55158	86875	86875					0.0164143909764789
TKFVIDEHP	9	Unmodified	_TKFVIDEHP_					0	0	0			REV__STX11|p.E36K|1|0.12|ENSG00000135604|chr6:144186733-144186733|G/A|missense_variant	REV__STX11|p.E36K|1|0.12|ENSG00000135604|chr6:144186733-144186733|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.284931	1084.55531	-0.83532	-0.00045381	1.4343	0.00077923	0.59898	0.00032542	543.2854410878023	79.689	0.50291	79.689	79.283	79.786	0	0.0476	-0.00016674	NaN	31.53	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148300	+		78831	37587	55066	55158							0.0164143909764789
TKFVIDEHP	9	Unmodified	_TKFVIDEHP_					0	0	0			REV__STX11|p.E36K|1|0.12|ENSG00000135604|chr6:144186733-144186733|G/A|missense_variant	REV__STX11|p.E36K|1|0.12|ENSG00000135604|chr6:144186733-144186733|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.284931	1084.55531	-1.7364	-0.00094334	2.2836	0.0012406	0.54723	0.0002973	543.2860411974278	79.784	0.71277	79.611	79.15	79.863	-0.17226	-0.029944	0.00075607	NaN	31.53	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161940	+		78832	37587	55066	55158							0.0164143909764789
TKFVMAVM	8	Unmodified	_TKFVMAVM_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2519836425781	2	463.745542	925.476531	-0.34659	-0.00016073	4.3949	0.0020381	4.0483	0.0018774	463.74737128374187	27.195	0.59252	26.952	26.786	27.379	-0.24217					20	13	3	0	0	0	0.027866	1	1538	1538		24.203	0	1	144660	+		78833	36460	55067	55159	86876	86876					0.01081172267367947
TKFVMAVM	8	Unmodified	_TKFVMAVM_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.745542	925.476531	-0.3795	-0.00017599	4.5362	0.0021037	4.1567	0.0019277	463.74746100833374	27.053	0.41948	26.885	26.594	27.013	-0.16816	-0.033744	7.8504E-05	NaN	17.365	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121960	+		78834	36460	55067	55159							0.01081172267367947
TKGFLQAR	8	Unmodified	_TKGFLQAR_					0	0	0		ENST00000598463.5_1_19:51301487-51301613:-|nuORF	ENST00000598463.5_1_19:51301487-51301613:-|nuORF	ENST00000598463.5_1_19:51301487-51301613:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7510681152344	2	460.769252	919.52395	-0.27356	-0.00012605	2.5212	0.0011617	2.2476	0.0010356	460.76925158312656	34.156	0.47328	34.206	34.005	34.479	0.050255					25	11	3	0	0	0	0.027866	1	2450	2450		15.642	4.1308	1	145080			78835	17471	55068	55160	86877	86877					0.06096910854239468
TKGIVKNK	8	Unmodified	_TKGIVKNK_					0	0	0			REV__ENST00000508914.1_1_4:120473609-120484125:-|nuORF	REV__ENST00000508914.1_1_4:120473609-120484125:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2922668457031	2	444.287277	886.560001	0.57401	0.00025503	0.41478	0.00018428	0.98879	0.00043931	444.2869810319322	37.079	0.32877	37.016	36.904	37.232	-0.063389					13	8	3	0	0	0	0.027866	1	2971	2971		31.955	2.8053	1	113700	+		78836	34077	55069	55161	86878	86878					0.11218368031074988
TKGRSRPK	8	Unmodified	_TKGRSRPK_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.802978515625	2	465.2856	928.556647	-0.91633	-0.00042636	-3.7638	-0.0017512	-4.6801	-0.0021776	465.28421787551605	29.389	0.73815	29.144	28.578	29.316	-0.24524					25	16	3	0	0	0	0.027866	1	1735	1735		14.865	0	1	64665	+		78837	36458	55070	55162	86879	86879					0.08951117977085232
TKGVALPETM	10	Unmodified	_TKGVALPETM_					0	0	0		ENSG00000175003|ENST00000366963|SLC22A1	ENSG00000175003|ENST00000366963|SLC22A1	ENSG00000175003|ENST00000366963|SLC22A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8001098632812	2	523.781167	1045.54778	-0.81556	-0.00042718	-4.3851	-0.0022969	-5.2007	-0.002724	523.7789228650762	48.329	0.64214	48.176	47.827	48.469	-0.15301					27	18	2	0	0	0	0.03519	1	4947	4947		25.574	7.312	1	519220			78838	8521	55071	55163	86880	86880					0.026829635057310952
TKGYNSDDNLC	11	Unmodified	_TKGYNSDDNLC_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.5245056152344	3	410.508282	1228.50302	0.097893	4.0186E-05	1.2395	0.00050884	1.3374	0.00054902	410.50895977896664	55.205	0.34361	54.974	54.785	55.128	-0.23087					18	9	3	0	0	0	0.024759	1	5920	5920		23.378	3.3811	1	155200			78839	928	55072	55164	86881	86881					-0.10209512098253981
TKHISRIQLSP	11	Unmodified	_TKHISRIQLSP_					0	0	0		ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.3029479980469	3	427.254216	1278.74082	-0.0070434	-3.0093E-06	-4.0718	-0.0017397	-4.0788	-0.0017427	427.2525711377733	70.013	0.99545	69.745	69.164	70.159	-0.26724					46	23	3	0	0	0	0.024738	1	8080	8080		31.068	16.374	1	122320			78840	12222	55073	55165	86882	86882					0.11259841617129496
TKHISRIQLSP	11	Unmodified	_TKHISRIQLSP_					0	0	0		ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	427.254216	1278.74082	-0.16092	-6.8753E-05	-4.1008	-0.0017521	-4.2617	-0.0018208	427.2524126101608	69.71	0.72029	69.71	69.273	69.993	0	-0.036549	0.00034011	NaN	31.068	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229410			78841	12222	55073	55165							0.11259841617129496
TKHISRIQLSP	11	Unmodified	_TKHISRIQLSP_					0	0	0		ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	427.254216	1278.74082	0.65005	0.00027774	-5.0764	-0.0021689	-4.4264	-0.0018912	427.25204942519844	70.197	0.65162	69.904	69.348	70	-0.29292	0.1573	-0.00091045	NaN	31.068	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155980			78842	12222	55073	55165							0.11259841617129496
TKHISRIQLSP	11	Unmodified	_TKHISRIQLSP_					0	0	0		ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	427.254216	1278.74082	-0.041612	-1.7779E-05	-4.0502	-0.0017305	-4.0918	-0.0017482	427.2525086072704	69.758	0.6824	69.771	69.349	70.032	0.012421	0.024479	0.00040494	NaN	31.068	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248150			78843	12222	55073	55165							0.11259841617129496
TKHKGALI	8	Unmodified	_TKHKGALI_					0	0	0			REV__ENST00000506125.1_1_4:170671685-170679028:-|nuORF	REV__ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.27410888671875	2	434.27417	866.533787	-0.15626	-6.7861E-05	-0.040256	-1.7482E-05	-0.19652	-8.5343E-05	434.27415018264725	47.732	1.6469	47.732	47.252	48.899	0					86	48	4	0	0	0	0.94517	1	4801	4801		45.952	1.4209	1	18306000	+		78844	20210	55074	55166	86883	86883					0.09518098859598467
TKHKGALI	8	Unmodified	_TKHKGALI_					0	0	0			REV__ENST00000506125.1_1_4:170671685-170679028:-|nuORF	REV__ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.27435302734375	2	434.27417	866.533787	-0.41972	-0.00018227	0.26555	0.00011532	-0.15416	-6.695E-05	434.2742455559153	47.633	1.5808	47.692	47.354	48.935	0.059093					80	45	4	0	0	0	0.94517	1	4722	4722		45.952	1.4209	1	18334000	+		78845	20210	55074	55166	86884	86884					0.09518098859598467
TKHKLSSFL	9	Unmodified	_TKHKLSSFL_					0	0	0		ENST00000559816.1_1_15:50534459-50545113:-|nuORF;nc|ENSG00000140287|P19113-2|HDC;ENSG00000140287|ENST00000267845|HDC	ENST00000559816.1_1_15:50534459-50545113:-|nuORF	ENST00000559816.1_1_15:50534459-50545113:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	530.80859375	2	530.811116	1059.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.7	1	103.57	103.07	104.07	-0.12783								0	0	0	0.69215	1	12909	12909		21.96	0	1				78846	5398	55075	55167	86885	86885					0.0802602223127451
TKHMNYHK	8	Unmodified	_TKHMNYHK_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.8138427734375	2	529.763643	1057.51273	-0.74051	-0.00039229	3.4868	0.0018472	2.7463	0.0014549	529.7660237593266	26.922	0.39711	26.909	26.704	27.101	-0.012981					11	9	2	0	0	0	0.027866	1	1405	1405		11.511	3.2797	1	51496			78847	3192	55076	55168	86886	86886					-0.013722345115638745
TKHSPAKPV	9	Unmodified	_TKHSPAKPV_					0	0	0			REV__ENSG00000136929|ENST00000616898|HEMGN	REV__ENSG00000136929|ENST00000616898|HEMGN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7798156738281	2	482.782359	963.550165	0.045374	2.1906E-05	-0.22959	-0.00011084	-0.18422	-8.8936E-05	482.78211746776736	49.866	1.0204	49.715	49.368	50.388	-0.1512					78	28	5	0	0	0	0.75397	1	5164	5164		42.396	1.618	1	2961400	+		78848	23706	55077	55169	86887	86887					0.06693180025695256
TKHSTQPSI	9	Unmodified	_TKHSTQPSI_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7666931152344	2	499.766906	997.519259	0.34921	0.00017452	-1.9193	-0.00095919	-1.5701	-0.00078467	499.76634807829527	41.793	1.2097	41.793	41.396	42.605	0					96	34	5	0	0	0	0.053401	1	3777	3777		127.46	17.983	1	16714000	+		78849	23370	55078	55170	86888	86888					0.020399819208023473
TKHSTQPSI	9	Unmodified	_TKHSTQPSI_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7660217285156	2	499.766906	997.519259	0.021865	1.0927E-05	-1.4806	-0.00073998	-1.4588	-0.00072905	499.7665158496713	41.923	1.3636	41.949	41.533	42.897	0.026016					111	38	6	0	0	0	0.1158	1	3732	3732		107.01	27.295	1	17937000	+		78850	23370	55078	55170	86889	86889					0.020399819208023473
TKIALERERDD	11	Unmodified	_TKIALERERDD_					0	0	0		NINL|p.K1055R|1|0.46|ENSG00000101004|chr20:25476127-25476127|T/C|missense_variant	NINL|p.K1055R|1|0.46|ENSG00000101004|chr20:25476127-25476127|T/C|missense_variant	NINL|p.K1055R|1|0.46|ENSG00000101004|chr20:25476127-25476127|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.56146240234375	3	449.240524	1344.69974	0.063265	2.8421E-05	3.1867	0.0014316	3.25	0.00146	449.241821379336	48.259	0.47316	48.072	47.825	48.298	-0.18684					25	12	3	0	0	0	0.024746	1	4746	4746		21.032	0	1	253790			78851	18872	55079	55171	86890	86890					0.04118035786973451
TKICKPVLL	9	Unmodified	_TKICKPVLL_					0	0	0		ENSG00000104371|ENST00000220812|DKK4	ENSG00000104371|ENST00000220812|DKK4	ENSG00000104371|ENST00000220812|DKK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.800048828125	2	507.822638	1013.63072	-0.57123	-0.00029008	-2.2282	-0.0011315	-2.7994	-0.0014216	507.8215162058974	31.108	0.23961	30.923	30.784	31.023	-0.18503					9	5	2	0	0	0	0.024541	1	2044	2044		17.365	4.4058	1	87094			78852	2565	55080	55172	86891	86891					0.12445325024384601
TKIHTKLNSSD	11	Unmodified	_TKIHTKLNSSD_					0	0	0			REV__ENSG00000067646|ENST00000155093|ZFY	REV__ENSG00000067646|ENST00000155093|ZFY	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.3370361328125	2	622.335684	1242.65681	0.39402	0.00024521	1.1385	0.00070851	1.5325	0.00095372	622.336188137673	109.98	0.52066	109.97	109.79	110.31	-0.009491					57	23	4	0	0	0	1.0465	1	13901	13901		26.063	0.48933	1	2001700	+		78853	20363	55081	55173	86892	86892					0.045192657295501704
TKIIIDEID	9	Unmodified	_TKIIIDEID_					0	0	0			REV__nc|ENSG00000213471|A6NNM8-2|TTLL13	REV__nc|ENSG00000213471|A6NNM8-2|TTLL13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2936401367188	2	530.300247	1058.58594	-0.14114	-7.4846E-05	4.1339	0.0021922	3.9927	0.0021173	530.3022012202671	30.269	0.93304	30.12	29.835	30.768	-0.14952					44	21	3	0	0	0	0.024477	1	1869	1869		35.618	7.364	1	899630	+		78854	28742	55082	55174	86893	86893					0.058991726920339715
TKILPQLSFLI	11	Unmodified	_TKILPQLSFLI_					0	0	0		ENST00000524141.5_1_8:48625456-48625810:+|nuORF	ENST00000524141.5_1_8:48625456-48625810:+|nuORF	ENST00000524141.5_1_8:48625456-48625810:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	424.9134521484375	3	424.935713	1271.78531	-0.57487	-0.00024428	-1.6726	-0.00071076	-2.2475	-0.00095505	424.9349170342303	39.308	0.1783	39.332	39.277	39.455	0.023727					7	4	2	0	0	0	0.024742	1	3324	3324		38.714	16.934	1	50125			78855	16054	55083	55175	86894	86894					0.16028852710610408
TKINLKREDI	10	Unmodified	_TKINLKREDI_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.2124938964844	3	410.578588	1228.71394	-0.24846	-0.00010201	3.5455	0.0014557	3.297	0.0013537	410.5800066019277	46.966	0.64774	46.772	46.545	47.192	-0.19387					29	17	2	0	0	0	0.03519	1	4554	4554		33.039	0	1	410460			78856	6235	55084	55176	86895	86895					0.10872733005953705
TKINYGGEIP	10	Unmodified	_TKINYGGEIP_					0	0	0		nc|ENSG00000100012|Q9UDX4-3|SEC14L3;nc|ENSG00000100012|Q9UDX4-2|SEC14L3;ENSG00000100012|ENST00000215812|SEC14L3	nc|ENSG00000100012|Q9UDX4-3|SEC14L3	nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7760620117188	2	546.290214	1090.56587	-0.91034	-0.00049731	-0.34256	-0.00018714	-1.2529	-0.00068445	546.2902449245879	52.815	0.61454	52.815	52.472	53.086	0					36	15	4	0	0	0	0.03519	1	5635	5635		59.931	0	1	1040400			78857	2115	55085	55177	86896	86896					0.02421421752092101
TKIPSLTVK	9	Unmodified	_TKIPSLTVK_					0	0	0			REV__ENST00000240304.5_1_17:48827951-48829591:+|nuORF	REV__ENST00000240304.5_1_17:48827951-48829591:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.27880859375	2	493.815867	985.617182	0.5731	0.00028301	-0.9635	-0.00047579	-0.3904	-0.00019279	493.8153233454757	20.901	1.0293	20.705	20.385	21.415	-0.19577					49	20	5	0	0	0	0.024484	1	568	568		30.318	0	1	1458100	+		78858	29447	55086	55178	86897	86897					0.12379790516808953
TKIPSPLI	8	Unmodified	_TKIPSPLI_					0	0	0		nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7479248046875	2	434.778754	867.542954	-0.8967	-0.00038986	3.6346	0.0015803	2.7379	0.0011904	434.7802723298318	64.642	0.98078	64.38	64.155	65.136	-0.2626					36	25	2	0	0	0	0.027866	1	7697	7697		68.787	10.976	1	137280			78859	3366	55087	55179	86898	86898					0.10388447425293634
TKIPSPLI	8	Unmodified	_TKIPSPLI_					0	0	0		nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.778754	867.542954	0.89545	0.00038932	2.1166	0.00092027	3.0121	0.0013096	434.7797239387891	64.133	0.84504	64.133	63.88	64.725	0	-0.12358	-0.00051721	NaN	68.787	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100170			78860	3366	55087	55179							0.10388447425293634
TKIRGVIV	8	Unmodified	_TKIRGVIV_					0	0	0			REV__ENST00000382812.5_1_13:21086626-21099933:-|nuORF	REV__ENST00000382812.5_1_13:21086626-21099933:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2798156738281	2	443.297645	884.580737	-0.0037183	-1.6483E-06	4.0357	0.001789	4.032	0.0017874	443.2993359103184	54.764	0.249	54.862	54.733	54.982	0.098015					9	6	2	0	0	0	0.027866	1	5957	5957		19.36	0	1	72389	+		78861	31548	55088	55180	86899	86899					0.13382958410750234
TKIRRSSEHEG	11	Unmodified	_TKIRRSSEHEG_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.914306640625	3	433.89698	1298.66911	-0.257	-0.00011151	-3.4035	-0.0014768	-3.6605	-0.0015883	433.8959405936787	41.928	0.15022	41.696	41.583	41.733	-0.23186					5	3	2	0	0	0	0.024755	1	3718	3718		37.6	4.5605	1	33077	+		78862	23279	55089	55181	86900	86900					0.03172302192638199
TKIRTDLKL	9	Unmodified	_TKIRTDLKL_					0	0	0			REV__nc|ENSG00000274736|P55773|CCL23	REV__nc|ENSG00000274736|P55773|CCL23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.30078125	2	544.345323	1086.67609	-1.0532	-0.00057329	-1.6132	-0.00087812	-2.6663	-0.0014514	544.8461190529607	49.925	0.13855	50.006	49.884	50.022	0.08099					5	3	2	0	0	0	0.0245	1	5118	5118		36.447	2.5251	1	38056	+		78863	29185	55090	55182	86901	86901					0.13622266811125883
TKIVLKNQ	8	Unmodified	_TKIVLKNQ_					0	0	0			REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6	REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2837219238281	2	472.300384	942.586216	-0.20646	-9.751E-05	-0.67921	-0.00032079	-0.88567	-0.0004183	472.30015284646083	53.627	0.50692	53.48	53.132	53.639	-0.14724					19	13	3	0	0	0	0.027866	1	5807	5807		19.36	3.7182	1	63520	+		78864	26368	55091	55183	86902	86902					0.112626372025602
TKIVQIKGI	9	Unmodified	_TKIVQIKGI_					0	0	0			REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF	REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3133850097656	2	500.331685	998.648816	-0.092142	-4.6102E-05	1.3794	0.00069017	1.2873	0.00064407	500.33250121626725	76.216	0.28119	75.964	75.905	76.186	-0.25162					9	6	2	0	0	0	0.024484	1	9065	9065		30.318	3.6248	1	108560	+		78865	33167	55092	55184	86903	86903					0.1494378327075765
TKIVRLLV	8	Unmodified	_TKIVRLLV_					0	0	0		ENST00000334295.8_1_18:34376463-34376655:-|nuORF	ENST00000334295.8_1_18:34376463-34376655:-|nuORF	ENST00000334295.8_1_18:34376463-34376655:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	471.328945	940.643337	0.66394	0.00031293	3.4662	0.0016337	4.1302	0.0019467	471.3308726945669	50.147	0.19055	50.228	50.085	50.276	0.08099					7	5	2	0	0	0	0.027866	1	5141	5141		60.972	0	1	101670			78866	12382	55093	55185	86904	86904					0.17064104478947684
TKIYARSALSV	11	Unmodified	_TKIYARSALSV_					0	0	0			REV__ENSG00000138050|ENST00000505747|THUMPD2	REV__ENSG00000138050|ENST00000505747|THUMPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	403.5719299316406	3	403.571434	1207.69247	0.47636	0.00019225	0.57195	0.00023082	1.0483	0.00042307	403.5716517356722	42.594	1.719	42.471	42.116	43.834	-0.12299					117	45	4	0	0	0	0.99147	1	3869	3869		38.714	1.2059	1	5393200	+		78867	23810	55094	55186	86905	86905					0.09693347977213307
TKIYGAPFNI	10	Unmodified	_TKIYGAPFNI_					0	0	0			REV__ENST00000555704.5_1_14:50176987-50190593:+|nuORF	REV__ENST00000555704.5_1_14:50176987-50190593:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3104858398438	2	562.310949	1122.60735	0.47833	0.00026897	-0.52432	-0.00029483	-0.045989	-2.586E-05	562.310507123631	87.594	1.9186	87.613	87.218	89.136	0.018982					140	45	5	0	0	0	0.47897	1	10928	10928		90.601	2.8466	1	3090500	+		78868	34968	55095	55187	86906	86906					0.05094602511417179
TKIYGAPFNI	10	Unmodified	_TKIYGAPFNI_					0	0	0			REV__ENST00000555704.5_1_14:50176987-50190593:+|nuORF	REV__ENST00000555704.5_1_14:50176987-50190593:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3114013671875	2	562.310949	1122.60735	0.50693	0.00028505	-0.7797	-0.00043843	-0.27277	-0.00015338	562.3104344464497	87.379	0.75547	87.243	86.926	87.682	-0.13613					47	17	4	0	0	0	0.12043	1	10644	10644		131.03	26.285	1	923100	+		78869	34968	55095	55187	86907	86907					0.05094602511417179
TKIYGAPFNI	10	Unmodified	_TKIYGAPFNI_					0	0	0			REV__ENST00000555704.5_1_14:50176987-50190593:+|nuORF	REV__ENST00000555704.5_1_14:50176987-50190593:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.3125	2	562.310949	1122.60735	-0.15363	-8.6388E-05	-0.098327	-5.529E-05	-0.25196	-0.00014168	562.3107707884344	87.422	0.71162	87.285	86.995	87.707	-0.13734					43	16	4	0	0	0	0.56936	1	10617	10617		80.455	0.74203	1	884850	+		78870	34968	55095	55187	86908	86908					0.05094602511417179
TKKAKAKGK	9	Unmodified	_TKKAKAKGK_					0	0	0		nc|ENSG00000148187|Q96E11-7|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;nc|ENSG00000148187|Q96E11-5|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-3|MRRF;ENSG00000148187|ENST00000344641|MRRF;ENST00000435941.1_1_X:122250823-122251621:-|nuORF	nc|ENSG00000148187|Q96E11-7|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29193115234375	2	480.321651	958.62875	-0.4385	-0.00021062	-0.8682	-0.00041701	-1.3067	-0.00062763	480.3212925672569	56.233	0.19747	56.017	55.961	56.158	-0.21551					6	4	2	0	0	0	0.024541	1	6063	6063		19.104	3.4673	1	281110			78871	18368	55096	55188	86909	86909					0.14778032330787028
TKKAKLIK	8	Unmodified	_TKKAKLIK_					0	0	0			REV__ENSG00000166669|ENST00000562102|ATF7IP2	REV__ENSG00000166669|ENST00000562102|ATF7IP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.28680419921875	2	465.328945	928.643337	-0.24554	-0.00011426	-1.1619	-0.00054065	-1.4074	-0.00065491	465.3280840024303	75.48	0.44225	75.221	75.075	75.517	-0.25866					22	10	3	0	0	0	0.027866	1	8921	8921		111.65	26.733	1	313950	+		78872	26040	55097	55189	86910	86910					0.17616104478929628
TKKAKLIK	8	Unmodified	_TKKAKLIK_					0	0	0			REV__ENSG00000166669|ENST00000562102|ATF7IP2	REV__ENSG00000166669|ENST00000562102|ATF7IP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.328945	928.643337	-0.23155	-0.00010775	5.2029	0.0024211	4.9713	0.0023133	465.33136022707447	75.418	0.15033	75.173	75.116	75.266	-0.24455	-0.023946	0.0022427	NaN	111.65	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68518	+		78873	26040	55097	55189							0.17616104478929628
TKKETTALRA	10	Unmodified	_TKKETTALRA_					0	0	0			REV__ENSG00000105373|ENST00000246802|NOP53	REV__ENSG00000105373|ENST00000246802|NOP53	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8321533203125	2	559.830037	1117.64552	-0.31677	-0.00017734	3.8152	0.0021359	3.4984	0.0019585	559.831966398586	78.812	1.3387	78.812	78.531	79.87	0					101	31	4	0	0	0	0.99657	1	9828	9828		46.457	0.50483	1	3102100	+		78874	21519	55098	55190	86911	86911					0.09140488426055526
TKKFLFVF	8	Unmodified	_TKKFLFVF_					0	0	0			REV__ENST00000543095.6_2_14:31762267-31762342:-|nuORF	REV__ENST00000543095.6_2_14:31762267-31762342:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8394165039062	2	515.310221	1028.60589	-0.77937	-0.00040162	-3.2899	-0.0016953	-4.0693	-0.002097	515.3083220269327	57.494	0.49915	57.316	57.096	57.596	-0.17775					22	12	2	0	0	0	0.027866	1	6251	6251		33.516	1.5607	1	431460	+		78875	34798	55099	55191	86912	86912					0.0927301321332834
TKKGILML	8	Unmodified	_TKKGILML_					0	0	0			REV__ENST00000241416.11_1_2:148602731-148654031:+|nuORF	REV__ENST00000241416.11_1_2:148602731-148654031:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2428283691406	2	452.288431	902.562309	-0.085397	-3.8624E-05	0.19536	8.8357E-05	0.10996	4.9733E-05	452.2883051017453	54.123	0.17542	53.877	53.804	53.98	-0.2453					8	5	2	0	0	0	0.027866	1	5703	5703		19.36	0	1	233440	+		78876	29449	55100	55192	86913	86913					0.10713080444520529
TKKGPQVW	8	Unmodified	_TKKGPQVW_					0	0	0			REV__ENST00000606061.1_1_20:32881868-32891076:-|nuORF	REV__ENST00000606061.1_1_20:32881868-32891076:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.3000793457031	2	472.271627	942.528701	0.47267	0.00022323	3.5596	0.0016811	4.0323	0.0019043	472.27324435769646	20	0.53489	19.777	19.533	20.067	-0.22344					13	10	2	0	0	0	0.027866	1	499	499		25.45	8.7452	1	19010	+		78877	35925	55101	55193	86914	86914					0.05513794996988963
TKKIVVPM	8	Unmodified	_TKKIVVPM_					0	0	0			REV__SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant	REV__SLC35F1|p.L314Hfs*55|1|0.36|ENSG00000196376|chr6:118285276-118285277|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.27392578125	2	458.288431	914.562309	-0.99126	-0.00045428	1.8928	0.00086746	0.90157	0.00041318	458.28941739667135	34.091	0.46645	33.915	33.701	34.168	-0.17557					14	11	2	0	0	0	0.027866	1	2490	2490		18.324	0	1	51173	+		78878	37504	55102	55194	86915	86915					0.10161080444527215
TKKKGMGKKK	10	Unmodified	_TKKKGMGKKK_					0	0	0			REV__nc|ENSG00000133216|P29323|EPHB2	REV__nc|ENSG00000133216|P29323|EPHB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.2684326171875	2	567.362993	1132.71143	-0.17586	-9.9775E-05	1.5311	0.00086866	1.3552	0.00076889	567.3637249565245	46.248	0.68334	45.986	45.777	46.461	-0.26118					46	17	3	0	0	0	0.03519	1	4435	4435		9.7057	0.52274	1	1439100	+		78879	36669	55103	55195	86916	86916					0.15038606067309956
TKKKGMGKKK	10	Unmodified	_TKKKGMGKKK_					0	0	0			REV__nc|ENSG00000133216|P29323|EPHB2	REV__nc|ENSG00000133216|P29323|EPHB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.362993	1132.71143	-0.54904	-0.0003115	1.7489	0.00099224	1.1998	0.00068073	567.3638461835384	46.202	0.70664	46.202	45.953	46.659	0	0.10757	0.00011163	NaN	9.7057	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1493100	+		78880	36669	55103	55195							0.15038606067309956
TKKKKKAK	8	Unmodified	_TKKKKKAK_					0	0	0		ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29248046875	2	480.339844	958.665135	-0.2641	-0.00012686	-1.872	-0.00089919	-2.1361	-0.0010261	480.3401045792307	56.032	0.1844	55.875	55.748	55.933	-0.15656					6	4	2	0	0	0	0.027866	1	6034	6034		12.207	5.0135	1	79554			78881	6629	55104	55196	86917	86917					0.18414909227499265
TKKKKKAKK	9	Unmodified	_TKKKKKAKK_					0	0	0		ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	ENSG00000157895|ENST00000288757|C12orf43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.3216552734375	2	544.387326	1086.7601	-0.4255	-0.00023164	-2.9522	-0.0016071	-3.3777	-0.0018388	544.8864835332951	24.531	0.11887	24.316	24.218	24.336	-0.2151					4	2	2	0	0	0	0.024541	1	1070	1070		3.6843	0	1	17644			78882	6629	55105	55197	86918	86918					0.22018842698685148
TKKKRAKK	8	Unmodified	_TKKKRAKK_					0	0	0			REV__ENSG00000172209|ENST00000304402|GPR22	REV__ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.30133056640625	2	494.342918	986.671283	0.80528	0.00039808	1.4394	0.00071156	2.2447	0.0011096	494.34372643537597	96.054	0.16253	96.056	95.953	96.115	0.0020752					5	3	2	0	0	0	0.027866	1	12154	12154		1.2052	0.10972	1	112950	+		78883	26645	55106	55198	86919	86919					0.17741427459020542
TKKLKKYEK	9	Unmodified	_TKKLKKYEK_					0	0	0		ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;nc|ENSG00000152061|Q5R372-9|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	ENSG00000152061|ENST00000681986|RABGAP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.368408203125	2	583.368798	1164.72304	1.2797	0.00074655	-1.2916	-0.00075345	-0.011833	-6.9032E-06	583.3679873680873	17.085	0.35254	16.931	16.756	17.108	-0.15403					13	6	3	0	0	0	1.0019	1	150	150		19.997	0	1	100850			78884	6245	55107	55199	86920	86920					0.1472712636225424
TKKMKVSH	8	Unmodified	_TKKMKVSH_					0	0	0		DNAJB1|p.I185V|1|0.08|ENSG00000132002|chr19:14516705-14516705|T/C|missense_variant	DNAJB1|p.I185V|1|0.08|ENSG00000132002|chr19:14516705-14516705|T/C|missense_variant	DNAJB1|p.I185V|1|0.08|ENSG00000132002|chr19:14516705-14516705|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2926025390625	2	479.778762	957.542971	-0.083395	-4.0011E-05	1.1494	0.00055145	1.066	0.00051144	479.77913027824945	55.891	0.35674	55.675	55.525	55.881	-0.21607					13	9	2	0	0	0	0.027866	1	6043	6043		10.866	0	1	145780			78885	654	55108	55200	86921	86921					0.06250124153632441
TKKPKGEP	8	Unmodified	_TKKPKGEP_					0	0	0			REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	REV__FLNA|p.F2285*|1|0.66|ENSG00000196924|chrX:154351936-154351937|AA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78790283203125	2	442.763635	883.512717	-0.29758	-0.00013176	1.0944	0.00048455	0.7968	0.0003528	442.76395110833664	42.985	0.61214	42.759	42.521	43.133	-0.22597					23	15	3	0	0	0	0.027866	1	3919	3919		24.203	11.996	1	210910	+		78886	28240	55109	55201	86922	86922					0.06630088760084618
TKKPTIPIE	9	Unmodified	_TKKPTIPIE_					0	0	0		ZAN|p.E883K|1|0.22|ENSG00000146839|chr7:100752752-100752752|G/A|missense_variant	ZAN|p.E883K|1|0.22|ENSG00000146839|chr7:100752752-100752752|G/A|missense_variant	ZAN|p.E883K|1|0.22|ENSG00000146839|chr7:100752752-100752752|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.81494140625	2	513.813325	1025.6121	-0.52251	-0.00026847	4.4245	0.0022734	3.902	0.0020049	513.8154753786599	44.992	0.86298	44.739	44.429	45.292	-0.25252					54	22	4	0	0	0	0.82115	1	4235	4235		37.812	0	1	3021400			78887	38169	55110	55202	86923	86923					0.10031486654202126
TKKREGPK	8	Unmodified	_TKKREGPK_					0	0	0			REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.30010986328125	2	472.287808	942.561064	0.27197	0.00012845	0.45781	0.00021622	0.72978	0.00034466	472.28766106601836	20.538	0.54173	20.37	20.049	20.591	-0.16774					14	10	2	0	0	0	0.027866	1	535	535		23.042	6.5693	1	29947	+		78888	27280	55111	55203	86924	86924					0.0874858239999412
TKKREGPK	8	Unmodified	_TKKREGPK_					0	0	0			REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.287808	942.561064	0.84227	0.00039779	-1.2746	-0.00060198	-0.43234	-0.00020419	472.28723942026824	20.642	0.44432	20.446	20.236	20.681	-0.19577	0.027617	-0.00093194	NaN	23.042	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35289	+		78889	27280	55111	55203							0.0874858239999412
TKKREGPK	8	Unmodified	_TKKREGPK_					0	0	0			REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.287808	942.561064	-0.58376	-0.0002757	0.58525	0.00027641	0.0014909	7.0412E-07	472.28791471316146	20.663	0.39697	20.44	20.266	20.663	-0.22344	0.02095	0.00082484	NaN	23.042	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47753	+		78890	27280	55111	55203							0.0874858239999412
TKKRQSGL	8	Unmodified	_TKKRQSGL_					0	0	0			REV__ENST00000495715.1_1_10:3109871-3111491:+|nuORF	REV__ENST00000495715.1_1_10:3109871-3111491:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2845153808594	2	459.279983	916.545414	-0.051962	-2.3865E-05	-4.3274	-0.0019875	-4.3793	-0.0020113	459.2778629915687	56.825	0.54276	56.825	56.46	57.003	0					20	15	2	0	0	0	0.027866	1	6303	6303		50.025	0	1	256810	+		78891	31506	55112	55204	86925	86925					0.08380295882943756
TKKRYSTL	8	Unmodified	_TKKRYSTL_					0	0	0			REV__nc|ENSG00000137070|Q14626-2|IL11RA	REV__nc|ENSG00000137070|Q14626-2|IL11RA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.2552490234375	2	498.795466	995.57638	0.13231	6.5995E-05	2.7405	0.0013669	2.8728	0.0014329	498.7965535534493	71.678	0.47816	71.403	71.188	71.666	-0.27509					16	11	2	0	0	0	0.027866	1	8398	8398		16.473	0	1	229660	+		78892	23720	55113	55205	86926	86926					0.07841449197189831
TKKSKLRY	8	Unmodified	_TKKSKLRY_					0	0	0		ENST00000566078.1_1_16:67644735-67645545:+|nuORF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3021850585938	2	512.319109	1022.62366	0.66762	0.00034203	-0.78192	-0.00040059	-0.1143	-5.8557E-05	512.3184909687727	51.503	0.9054	51.389	50.933	51.838	-0.1132					46	23	3	0	0	0	0.027866	1	5281	5281		18.324	6.1176	1	862820			78893	599	55114	55206	86927	86927					0.11325728468182206
TKKTIKKKI	9	Unmodified	_TKKTIKKKI_					0	0	0		L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|14|2|sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|14|2|sense	L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|14|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3212890625	2	544.381709	1086.74886	1.4751	0.00080301	-3.6851	-0.0020061	-2.21	-0.0012031	544.3797364973752	24.419	0.21369	24.238	24.072	24.285	-0.18089					5	4	2	0	0	0	0.024541	1	1029	1029		1.0954	0	1	19405			78894	17818	55115	55207	86928	86928					0.20896020604550358
TKKTITEEV	9	Unmodified	_TKKTITEEV_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2692260742188	2	524.797872	1047.58119	-1.2752	-0.00066921	3.4964	0.0018349	2.2213	0.0011657	524.798175235966	35.12	0.14605	35.12	35.018	35.164	0					5	3	2	0	0	0	0.024477	1	2664	2664		9.7057	2.5123	1	52812			78895	7034	55116	55208	86929	86929					0.05930288549279794
TKKVTKHPS	9	Unmodified	_TKKVTKHPS_					0	0	0			REV__nc|ENSG00000163374|Q9H869-6|YY1AP1	REV__nc|ENSG00000163374|Q9H869-6|YY1AP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3050537109375	2	513.308741	1024.60293	-0.34484	-0.00017701	0.7258	0.00037256	0.38097	0.00019555	513.308998837457	53.458	0.53121	53.458	53.124	53.655	0					35	14	3	0	0	0	0.024477	1	5807	5807		20.947	0	1	2291300	+		78896	25559	55117	55209	86930	86930					0.0916113808850696
TKLAEISH	8	Unmodified	_TKLAEISH_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000586702.1_1_19:11313124-11313960:-|nuORF;ENSG00000130158|ENST00000294618|DOCK6	nc|ENSG00000116641|Q96N67-4|DOCK7;ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.2616882324219	2	449.753267	897.491981	0.19971	8.9822E-05	0.23756	0.00010684	0.43727	0.00019666	449.75330588140554	41.464	0.49735	41.341	41.189	41.687	-0.12317					18	13	3	0	0	0	0.027866	1	3699	3699		3.41	0	1	244900			78897	4388;3559	55118	55210	86931	86931					0.03913498380427427
TKLAFILDD	9	Unmodified	_TKLAFILDD_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7677612304688	2	518.289682	1034.56481	-0.33358	-0.00017289	4.1918	0.0021726	3.8582	0.0019997	518.7937226161761	52.452	0.62845	52.544	52.16	52.788	0.091942					20	15	2	0	0	0	0.024261	1	5503	5503		45.972	3.5761	1	198220	+		78898	25715	55119	55211	86932	86932					0.04891207383184337
TKLAFILDD	9	Unmodified	_TKLAFILDD_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.289682	1034.56481	-0.71613	-0.00037117	-1.3451	-0.00069715	-2.0612	-0.0010683	518.7929888285616	52.481	0.74683	52.362	51.974	52.721	-0.11876	-0.21716	-0.0024035	NaN	45.972	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116360	+		78899	25715	55119	55211							0.04891207383184337
TKLAFILDD	9	Unmodified	_TKLAFILDD_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.289682	1034.56481	0.65276	0.00033832	-0.18133	-9.3981E-05	0.47143	0.00024434	518.7915398913591	53.091	0.27807	52.832	52.683	52.961	-0.25838	0.25263	-0.0011972	NaN	45.972	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125930	+		78900	25715	55119	55211							0.04891207383184337
TKLAIHQV	8	Unmodified	_TKLAIHQV_					0	0	0			REV__nc|ENSG00000158104|P32754-2|HPD	REV__nc|ENSG00000158104|P32754-2|HPD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.2554016113281	2	455.279452	908.544351	0.38187	0.00017386	-0.26883	-0.00012239	0.11304	5.1465E-05	455.2791121458558	57.586	0.4548	57.586	57.148	57.603	0					19	11	2	0	0	0	0.027866	1	6428	6428		16.473	3.514	1	563400	+		78901	25172	55120	55212	86933	86933					0.08642081514028632
TKLASHKLFKI	11	Unmodified	_TKLASHKLFKI_					0	0	0			REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	REV__SUGP2|p.G600Afs*33|1|0.1|ENSG00000064607|chr19:19019160-19019160|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	643.398681640625	2	643.403173	1284.79179	1.1133	0.00071631	4.3758	0.0028154	5.4891	0.0035317	643.406068364471	104.31	0.59724	104.31	104.02	104.62	0.0031357					37	14	4	0	0	0	1.0183	1	13348	13348		32.751	1.2207	1	372490	+		78902	20288	55121	55213	86934	86934					0.16078790661981657
TKLDKKVQV	9	Unmodified	_TKLDKKVQV_					0	0	0			REV__ENSG00000120948|ENST00000240185|TARDBP	REV__ENSG00000120948|ENST00000240185|TARDBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7611694335938	2	529.832049	1057.64954	-0.48244	-0.00025561	0.40879	0.00021659	-0.073648	-3.9021E-05	529.8321175689211	45.384	0.34835	45.131	44.944	45.292	-0.25252					15	9	2	0	0	0	0.024511	1	4271	4271		19.104	0	1	197540	+		78903	22571	55122	55214	86935	86935					0.12302577919808755
TKLDQILLN	9	Unmodified	_TKLDQILLN_					0	0	0		ENST00000480956.1_1_7:32527269-32527392:-|nuORF;ENST00000468872.5_1_7:32526875-32527392:-|nuORF;nc|ENSG00000106355|Q9Y4Y9-2|LSM5;ENSG00000106355|ENST00000450169|LSM5	ENST00000480956.1_1_7:32527269-32527392:-|nuORF	ENST00000480956.1_1_7:32527269-32527392:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.761962890625	2	529.316232	1056.61791	-0.43767	-0.00023166	4.3435	0.0022991	3.9059	0.0020674	529.3169310711471	45.549	1.0185	45.449	44.828	45.847	-0.099445					50	28	3	0	0	0	0.024495	1	4255	4255		19.997	0	1	1473700			78904	2783	55123	55215	86936	86936					0.09186585165866745
TKLIAGNKP	9	Unmodified	_TKLIAGNKP_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.7481384277344	2	471.292559	940.570566	0.19747	9.3064E-05	-0.38511	-0.0001815	-0.18765	-8.8436E-05	471.29217725473103	50.33	0.34305	50.051	49.802	50.145	-0.27977					14	8	2	0	0	0	0.024477	1	5059	5059		14.865	6.6336	1	251400			78905	8023	55124	55216	86937	86937					0.09790350685523208
TKLIAGNKP	9	Unmodified	_TKLIAGNKP_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.292559	940.570566	0.12928	6.0931E-05	-0.21822	-0.00010284	-0.088933	-4.1914E-05	471.29225630069317	50.1	0.49174	49.919	49.717	50.209	-0.18071	-0.15699	0.00010027	NaN	9.7057	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168300			78906	8023	55124	55216							0.09790350685523208
TKLIVRILEPV	11	Unmodified	_TKLIVRILEPV_					0	0	0			REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2646484375	3	427.614862	1279.82276	-0.012346	-5.2794E-06	-3.8772	-0.001658	-3.8896	-0.0016632	427.6134253347393	54.576	0.39058	54.426	54.051	54.442	-0.15036					14	10	2	0	0	0	0.024797	1	5929	5929		20.315	6.8071	1	196430	+		78907	22187	55125	55217	86938	86938					0.19403943976203664
TKLKPRVC	8	Unmodified	_TKLKPRVC_					0	0	0			REV__BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	REV__BAZ1A|p.L1490Ffs*4|1|0.21|ENSG00000198604|chr14:34754831-34754832|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.77606201171875	2	472.78913	943.563706	0.70557	0.00033358	-0.42015	-0.00019864	0.28542	0.00013494	472.7887650698015	98.554	0.213	98.564	98.48	98.693	0.010231					7	4	2	0	0	0	0.027866	1	12546	12546		7.1934	0	1	32692	+		78908	19199	55126	55218	86939	86939					0.08966714533289633
TKLKSEGI	8	Unmodified	_TKLKSEGI_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.7714538574219	2	438.263468	874.512382	1.0224	0.00044807	-0.61457	-0.00026934	0.40781	0.00017873	438.2631333301327	22.6	0.92629	22.398	22.097	23.023	-0.20199					36	19	3	0	0	0	0.027866	1	817	817		27.882	6.9353	1	176030			78909	18095	55127	55219	86940	86940					0.07010669040232642
TKLLEQSL	8	Unmodified	_TKLLEQSL_					0	0	0			REV__ENSG00000163207|ENST00000368764|IVL	REV__ENSG00000163207|ENST00000368764|IVL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.78485107421875	2	466.276575	930.538597	-0.32008	-0.00014924	-0.062977	-2.9365E-05	-0.38305	-0.00017861	466.27649314092	42.147	0.74397	41.917	41.472	42.216	-0.23029					44	20	3	0	0	0	0.027866	1	3809	3809		85.161	0	1	2177600	+		78910	25544	55128	55220	86941	86941					0.07054938211717854
TKLLETNI	8	Unmodified	_TKLLETNI_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.78411865234375	2	466.276575	930.538597	-0.0027396	-1.2774E-06	-0.33793	-0.00015757	-0.34067	-0.00015885	466.27636586706166	41.917	0.84772	41.794	41.307	42.155	-0.12299					46	22	3	0	0	0	0.027866	1	3797	3797		75.043	0	1	2447600			78911	3446	55129	55221	86942	86942					0.07054938211695116
TKLLLRIL	8	Unmodified	_TKLLLRIL_					0	0	0			REV__ENSG00000114738|ENST00000621469|MAPKAPK3	REV__ENSG00000114738|ENST00000621469|MAPKAPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31304931640625	2	485.344595	968.674637	0.076277	3.7021E-05	2.2438	0.001089	2.3201	0.001126	485.34524769164665	40.144	0.33167	40.144	39.915	40.247	0					11	8	2	0	0	0	0.027866	1	3517	3517		28.254	0	1	117900	+		78912	22138	55130	55222	86943	86943					0.18904677513046408
TKLNMLNEKVD	11	Unmodified	_TKLNMLNEKVD_					0	0	0		MYLK3|p.A214Lfs*31|1|0.17|ENSG00000140795|chr16:46738051-46738073|CCACTGCCTGGGCGGGGTCAGCT/-|frameshift_variant;ENSG00000140795|ENST00000394809|MYLK3	MYLK3|p.A214Lfs*31|1|0.17|ENSG00000140795|chr16:46738051-46738073|CCACTGCCTGGGCGGGGTCAGCT/-|frameshift_variant	MYLK3|p.A214Lfs*31|1|0.17|ENSG00000140795|chr16:46738051-46738073|CCACTGCCTGGGCGGGGTCAGCT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7590637207031	3	435.567472	1303.68059	-0.48236	-0.0002101	-1.3648	-0.00059447	-1.8472	-0.00080457	435.5667586115048	21.413	0.38576	21.413	21.244	21.63	0					14	7	3	0	0	0	0.024767	1	666	666		19.627	0	1	14148			78913	5442	55131	55223	86944	86944					0.04089363171715377
TKLPGPLTPS	10	Unmodified	_TKLPGPLTPS_					0	0	0		nc|ENSG00000122304|P04554-2|PRM2	nc|ENSG00000122304|P04554-2|PRM2	nc|ENSG00000122304|P04554-2|PRM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.7490234375	2	505.797675	1009.5808	-0.55364	-0.00028003	1.4927	0.00075501	0.93907	0.00047498	505.79814545372756	26.579	1.8449	26.556	25.609	27.454	-0.023088					86	45	3	0	0	0	0.03519	1	1421	1421		44.377	7.2181	1	245390			78914	18228	55132	55224	86945	86945					0.07638913620087351
TKLQRKVI	8	Unmodified	_TKLQRKVI_					0	0	0		ENST00000395884.3_1_8:103664534-103664603:-|nuORF	ENST00000395884.3_1_8:103664534-103664603:-|nuORF	ENST00000395884.3_1_8:103664534-103664603:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3059997558594	2	493.329476	984.6444	0.029048	1.433E-05	-2.8795	-0.0014205	-2.8504	-0.0014062	493.32811601232163	69.183	0.33524	69.183	68.938	69.273	0					12	8	2	0	0	0	0.027866	1	8292	8292		23.042	0	1	337060			78915	13535	55133	55225	86946	86946					0.15146318847837392
TKLRDWHH	8	Unmodified	_TKLRDWHH_					0	0	0		nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5	nc|ENSG00000163110|Q96HC4-3|PDLIM5	nc|ENSG00000163110|Q96HC4-3|PDLIM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7734985351562	2	546.788507	1091.56246	-0.75101	-0.00041064	2.5744	0.0014077	1.8234	0.00099702	546.7896938751778	32.62	2.7725	32.462	31.374	34.146	-0.15772					142	68	4	0	0	0	0.027866	1	2340	2340		26.796	14.589	1	1499700			78916	18442	55134	55226	86947	86947					0.020342164887551917
TKLRRKRT	8	Unmodified	_TKLRRKRT_					0	0	0			REV__ENST00000590100.5_1_17:43345421-43345667:+|nuORF	REV__ENST00000590100.5_1_17:43345421-43345667:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8095092773438	2	529.848899	1057.68324	1.0866	0.00057575	0.4113	0.00021792	1.4979	0.00079367	529.8489403133603	17.537	0.29798	17.383	17.209	17.507	-0.15403					7	5	2	0	0	0	0.027866	1	198	198		24.203	0	1	17238	+		78917	35694	55135	55227	86948	86948					0.15671044202213125
TKLSEEPQV	9	Unmodified	_TKLSEEPQV_					0	0	0			REV__IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;REV__ENST00000409258.2_1_2:86386442-86398424:-|nuORF	REV__ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.77392578125	2	515.774396	1029.53424	-0.46139	-0.00023797	0.71999	0.00037135	0.2586	0.00013338	515.7747283392533	66.683	0.48122	66.683	66.487	66.968	0					31	11	3	0	0	0	0.39228	1	7933	7933		66.429	6.311	1	2069600	+		78918	23264;31953	55136	55228	86949	86949					0.02065428998139396
TKLSEEPQV	9	Unmodified	_TKLSEEPQV_					0	0	0			REV__IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;REV__ENST00000409258.2_1_2:86386442-86398424:-|nuORF	REV__ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	515.774396	1029.53424	-0.80413	-0.00041475	0.94508	0.00048745	0.14095	7.2699E-05	515.7748295675646	66.716	0.58585	66.746	66.491	67.077	0.030106	0.025255	0.00011133	NaN	66.429	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2407100	+		78919	23264;31953	55136	55228							0.02065428998139396
TKLSFLINV	9	Unmodified	_TKLSFLINV_					0	0	0			REV__OIT3|p.G313V|1|0.26|ENSG00000138315|chr10:72913455-72913455|G/T|missense_variant	REV__OIT3|p.G313V|1|0.26|ENSG00000138315|chr10:72913455-72913455|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2984008789062	2	517.815867	1033.61718	-0.60805	-0.00031486	-0.18705	-9.6857E-05	-0.79509	-0.00041171	517.8148875099888	38.614	0.38778	38.523	38.286	38.673	-0.090816					14	9	2	0	0	0	0.024539	1	3243	3243		14.865	3.9993	1	43436	+		78920	23840	55137	55229	86950	86950					0.10171790516801593
TKLSIGQRE	9	Unmodified	_TKLSIGQRE_					0	0	0		ENSG00000134256|ENST00000682167|CD101;CD101|p.L865Ffs*33|1|0.05|ENSG00000134256|chr1:117025672-117025673|-/TTTCAGAT|frameshift_variant;CD101|p.Q272Tfs*20|1|0.06|ENSG00000134256|chr1:117011938-117011939|-/A|frameshift_variant	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	516.29583	1030.57711	-0.11512	-5.9436E-05	0.54562	0.0002817	0.4305	0.00022227	516.2959793175069	25.401	0.50194	25.231	24.912	25.413	-0.17078					23	11	3	0	0	0	0.024367	1	1153	1153		62.107	10.915	1	500300			78921	4772	55138	55230	86951	86951					0.06304243846238933
TKLSIKRFAM	10	Unmodified	_TKLSIKRFAM_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.85595703125	2	597.855001	1193.69545	-1.6739	-0.0010008	3.6591	0.0021876	1.9852	0.0011869	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.089	1	11669	11669		34.173	3.8548	1	4454900	+		78922	25775	55139	55231	86952	86952					0.10634899830392897
TKLSIKRFAM	10	Unmodified	_TKLSIKRFAM_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8560791015625	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.681	1	90.525	90.025	91.025	-0.1552								0	0	0	0.75601	1	11098	11098		26.693	1.1189	1		+		78923	25775	55139	55231	86953	86953					0.10634899830392897
TKLSIKRFAM	10	Unmodified	_TKLSIKRFAM_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MSMS	OPSCC_40_ClassI_Rep-1	4	597.8561401367188	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.689	1	91.54	91.04	92.04	-0.1487								0	0	0	0.73925	1	11243	11243		35.152	2.4015	1		+		78924	25775	55139	55231	86954	86954					0.10634899830392897
TKLSIKRFAM	10	Unmodified	_TKLSIKRFAM_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8561401367188	2	597.855001	1193.69545	-1.1131	-0.00066547	3.9491	0.002361	2.836	0.0016955	598.3593015087366	90.895	2.4279	90.77	89.373	91.801	-0.12512					145	57	3	0	0	0	1.0508	2	11124	11124;11255		39.253	7.723	1	2839900	+		78925	25775	55139	55231	86955;86956	86955					0.10634899830392897
TKLSIKRFAM	10	Unmodified	_TKLSIKRFAM_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8557739257812	2	597.855001	1193.69545	-0.56215	-0.00033608	2.4249	0.0014498	1.8628	0.0011137	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	1.089	3	11350	11281;11350;11481		34.173	5.7985	1	5880700	+		78926	25775	55139	55231	86957;86958;86959	86958					0.10634899830392897
TKLSITQGQQ	10	Unmodified	_TKLSITQGQQ_					0	0	0		nc|ENSG00000085514|Q9UKJ1-3|PILRA	nc|ENSG00000085514|Q9UKJ1-3|PILRA	nc|ENSG00000085514|Q9UKJ1-3|PILRA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.2616577148438	2	552.306395	1102.59824	-0.79475	-0.00043895	3.4293	0.001894	2.6345	0.0014551	552.3082204527474	44.725	0.5	44.476	44.251	44.751	-0.24946					18	12	2	0	0	0	0.03519	1	4219	4219		40.058	13.365	1	223230			78927	18101	55140	55232	86960	86960					0.05104209155092576
TKLTELFST	9	Unmodified	_TKLTELFST_					0	0	0			REV__nc|ENSG00000102145|P15976-3|GATA1	REV__nc|ENSG00000102145|P15976-3|GATA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2728881835938	2	520.28714	1038.55973	-0.59987	-0.0003121	-3.1741	-0.0016514	-3.7739	-0.0019635	520.2848067500208	61.486	0.55996	61.308	61.245	61.804	-0.17781					19	13	2	0	0	0	0.024541	1	6886	6886		9.1829	5.1977	1	931230	+		78928	21292	55141	55233	86961	86961					0.04198903520591557
TKLTKSVSAH	10	Unmodified	_TKLTKSVSAH_					0	0	0		FAM135B|p.P774H|1|0.09|ENSG00000147724|chr8:138152154-138152154|G/T|missense_variant	FAM135B|p.P774H|1|0.09|ENSG00000147724|chr8:138152154-138152154|G/T|missense_variant	FAM135B|p.P774H|1|0.09|ENSG00000147724|chr8:138152154-138152154|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.312744140625	2	536.31148	1070.60841	0.59137	0.00031716	-0.25105	-0.00013464	0.34032	0.00018252	536.3113371043105	97.078	1.1595	96.954	96.572	97.732	-0.12368					69	25	5	0	0	0	1.1329	1	12048	12048		27.882	0	1	563610			78929	17633	55142	55234	86962	86962					0.07592816880310238
TKLVPVPFK	9	Unmodified	_TKLVPVPFK_					0	0	0			REV__nc|ENSG00000003096|Q9P2N7|KLHL13	REV__nc|ENSG00000003096|Q9P2N7|KLHL13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8045654296875	2	514.828778	1027.643	-0.94669	-0.00048738	-3.9426	-0.0020298	-4.8893	-0.0025172	514.826719039312	48.04	0.32544	48.107	47.903	48.228	0.066795					14	8	2	0	0	0	0.024344	1	4790	4790		45.972	0	1	95382	+		78930	36423	55143	55235	86963	86963					0.13028684759092357
TKLVSGKL	8	Unmodified	_TKLVSGKL_					0	0	0		AATF|p.A377V|1|0.13|ENSG00000275700|chr17:36988701-36988701|C/T|missense_variant	AATF|p.A377V|1|0.13|ENSG00000275700|chr17:36988701-36988701|C/T|missense_variant	AATF|p.A377V|1|0.13|ENSG00000275700|chr17:36988701-36988701|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2754211425781	2	423.276378	844.538203	0.046932	1.9865E-05	-3.3619	-0.001423	-3.315	-0.0014032	423.2748331715636	87.722	1.1912	87.722	87.406	88.597	0					78	28	4	0	0	0	1.0574	1	11069	11069		21.96	0	1	3178300			78931	2	55144	55236	86964	86964					0.10971563282521402
TKLVSGKL	8	Unmodified	_TKLVSGKL_					0	0	0		AATF|p.A377V|1|0.13|ENSG00000275700|chr17:36988701-36988701|C/T|missense_variant	AATF|p.A377V|1|0.13|ENSG00000275700|chr17:36988701-36988701|C/T|missense_variant	AATF|p.A377V|1|0.13|ENSG00000275700|chr17:36988701-36988701|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.2750549316406	2	423.276378	844.538203	0.365	0.0001545	-3.6358	-0.0015389	-3.2708	-0.0013844	423.27473569730836	87.824	1.1914	87.789	87.405	88.596	-0.035355					72	28	4	0	0	0	1.0574	1	11044	11044		27.882	0	1	3163800			78932	2	55144	55236	86965	86965					0.10971563282521402
TKLVVEEHVKE	11	Unmodified	_TKLVVEEHVKE_					0	0	0			REV__nc|ENSG00000165494|O94913|PCF11	REV__nc|ENSG00000165494|O94913|PCF11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.8813171386719	3	437.581998	1309.72417	0.3991	0.00017464	0.49998	0.00021878	0.89908	0.00039342	437.58197525958496	39.381	0.40836	39.156	38.909	39.317	-0.2257					16	10	2	0	0	0	0.024758	1	3341	3341		22.781	0	1	141790	+		78933	25893	55145	55237	86966	86966					0.08169295940524535
TKLVVVAIGF	10	Unmodified	_TKLVVVAIGF_					0	0	0		ENSG00000165406|ENST00000453424|MARCHF8;ENST00000510786.1_1_4:164449902-164477015:-|nuORF;ENST00000476962.1_1_10:45953689-45956918:-|nuORF;nc|ENSG00000145416|Q8TCQ1-2|MARCHF1;nc|ENSG00000145416|Q8TCQ1|MARCHF1;nc|ENSG00000165406|Q5T0T0|MARCHF8;ENSG00000145416|ENST00000514618|MARCHF1	ENSG00000165406|ENST00000453424|MARCHF8	ENSG00000165406|ENST00000453424|MARCHF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.95166015625	2	523.83406	1045.65357	3.9114	0.0020489	2.9659	0.0015536	6.8773	0.0036026	523.835504798805	17.997	0.34682	17.755	17.528	17.875	-0.24256					15	6	3	0	0	0	0.03519	1	210	210		19.997	0	1	58371			78934	7410	55146	55238	86967	86967					0.13256667413520518
TKLWLHKA	8	Unmodified	_TKLWLHKA_					0	0	0			REV__ENST00000399438.7_2_5:64960114-64960377:+|nuORF	REV__ENST00000399438.7_2_5:64960114-64960377:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.8035888671875	2	498.803094	995.591636	-0.048509	-2.4196E-05	1.2296	0.00061332	1.1811	0.00058913	498.80359687571143	52.78	1.1183	52.653	52.353	53.471	-0.12705					100	28	5	0	0	0	1.043	1	5500	5500		30.504	2.2494	1	22958000	+		78935	31830	55147	55239	86968	86968					0.09366360785031702
TKMAVARLAA	10	Unmodified	_TKMAVARLAA_					0	0	0		ENST00000491580.1_1_3:111697881-111705196:+|nuORF;ENST00000497293.1_1_3:111697881-111700815:+|nuORF	ENST00000491580.1_1_3:111697881-111705196:+|nuORF	ENST00000491580.1_1_3:111697881-111705196:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2570190429688	2	516.305144	1030.59573	-0.10721	-5.5351E-05	1.1626	0.00060027	1.0554	0.00054492	516.3056607430707	25.093	0.34402	24.921	24.736	25.08	-0.1718					12	7	2	0	0	0	0.03519	1	1153	1153		49.442	7.0454	1	62225			78936	15463	55148	55240	86969	86969					0.08166082216416726
TKMQCWLLL	9	Unmodified	_TKMQCWLLL_					0	0	0			REV__ENSG00000115306|ENST00000356805|SPTBN1;REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000070182|P11277-3|SPTB;REV__nc|ENSG00000173898|O15020-2|SPTBN2	REV__ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.2996826171875	2	568.303755	1134.59296	-0.49958	-0.00028391	2.2921	0.0013026	1.7925	0.0010187	568.3050109953658	67.186	0.80505	66.903	66.671	67.476	-0.2825					40	19	3	0	0	0	0.024447	1	7977	7977		32.812	6.1195	1	828250	+		78937	22189;25323;20419;26818	55149	55241	86970	86970					0.031044907672821864
TKMRLFGP	8	Unmodified	_TKMRLFGP_					0	0	0			REV__ENST00000526926.5_1_8:144732100-144732160:+|nuORF	REV__ENST00000526926.5_1_8:144732100-144732160:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2700500488281	2	475.26803	948.521507	0.39273	0.00018665	0.32113	0.00015262	0.71386	0.00033928	475.2680913830577	24.63	1.0555	24.63	23.908	24.964	0					40	23	2	0	0	0	0.027866	1	1112	1112		12.959	0	1	266150	+		78938	34462	55150	55242	86971	86971					0.04518739124921467
TKNENSGKP	9	Unmodified	_TKNENSGKP_					0	0	0			REV__ENST00000330137.11_1_17:57189412-57189457:-|nuORF	REV__ENST00000330137.11_1_17:57189412-57189457:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7614440917969	2	487.748713	973.482873	-0.041723	-2.035E-05	-1.3084	-0.00063819	-1.3502	-0.00065854	487.74786965605085	59.018	0.21412	59.104	58.957	59.171	0.085686					6	5	2	0	0	0	0.024418	1	6647	6647		30.318	12.953	1	101310	+		78939	30453	55151	55243	86972	86972					-0.0049289497588915765
TKNKRIPL	8	Unmodified	_TKNKRIPL_					0	0	0			REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	REV__ENST00000265742.7_1_7:91875793-91924321:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.3131103515625	2	485.313826	968.613099	-0.19609	-9.5163E-05	-0.68154	-0.00033076	-0.87763	-0.00042592	485.31350998505343	40.188	1.7945	40.076	39.754	41.548	-0.11223					134	49	5	0	0	0	0.78609	1	3523	3523		60.294	4.7898	1	28426000	+		78940	29747	55152	55244	86973	86973					0.12753745813745354
TKNKTAIISK	10	Unmodified	_TKNKTAIISK_					0	0	0			REV__nc|ENSG00000169554|O60315-2|ZEB2	REV__nc|ENSG00000169554|O60315-2|ZEB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3261108398438	2	552.342781	1102.67101	-0.11469	-6.3346E-05	2.9283	0.0016174	2.8137	0.0015541	552.3442361708081	54.093	0.29517	53.848	53.746	54.041	-0.2453					11	9	2	0	0	0	0.03519	1	5727	5727		29.17	3.596	1	317890	+		78941	26379	55153	55245	86974	86974					0.12377962948494314
TKNNKQVL	8	Unmodified	_TKNNKQVL_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.76348876953125	2	472.779816	943.545079	-0.37024	-0.00017504	-0.26742	-0.00012643	-0.63766	-0.00030147	472.7793777927144	22.946	0.55384	22.761	22.369	22.923	-0.18539					15	11	2	0	0	0	0.027866	1	874	874		42.474	19.432	1	54968			78942	6231	55154	55246	86975	86975					0.07104876163089102
TKNNKQVL	8	Unmodified	_TKNNKQVL_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.779816	943.545079	0.88961	0.00042059	-1.1504	-0.00054388	-0.26077	-0.00012329	472.7790825528864	22.925	0.32498	22.734	22.572	22.897	-0.19117	0.010194	-0.0001627	NaN	30.504	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63481			78943	6231	55154	55246							0.07104876163089102
TKNRNGLYY	9	Unmodified	_TKNRNGLYY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.2666015625	2	564.793455	1127.57236	-0.50489	-0.00028516	4.0822	0.0023056	3.5773	0.0020204	564.7956222395068	76.006	0.94606	75.734	75.345	76.291	-0.27266					57	23	4	0	0	0	0.024319	1	9080	9080		56.721	17.468	1	1051500			78944	4258	55155	55247	86976	86976					0.013673597034767226
TKNRNGLYY	9	Unmodified	_TKNRNGLYY_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	564.793455	1127.57236	-0.099382	-5.613E-05	3.6353	0.0020532	3.5359	0.0019971	564.7954231346052	75.955	0.73985	75.696	75.398	76.138	-0.25866	0.027103	-0.00014633	NaN	56.721	50	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1182200			78945	4258	55155	55247							0.013673597034767226
TKNYAAALT	9	Unmodified	_TKNYAAALT_					0	0	0			REV__ENST00000487806.5_1_1:84964021-84964084:-|nuORF	REV__ENST00000487806.5_1_1:84964021-84964084:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.757080078125	2	476.758549	951.502546	0.18319	8.7336E-05	-1.8072	-0.00086158	-1.624	-0.00077425	476.7578441828843	100.9	1.5982	100.73	100.57	102.17	-0.17178					70	39	2	0	0	0	0.96322	1	12508	12508		27.882	3.6795	1	184860	+		78946	33623	55156	55248	86977	86977					0.024854810348415413
TKPAILKP	8	Unmodified	_TKPAILKP_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.2559509277344	2	434.286746	866.558939	0.03045	1.3224E-05	2.6109	0.0011339	2.6413	0.0011471	434.28785889808285	44.382	0.81882	44.419	43.998	44.817	0.0369					26	23	2	0	0	0	0.027866	1	4116	4116		16.473	0	1	134720			78947	9037	55157	55249	86978	86978					0.12032153662187284
TKPDISFY	8	Unmodified	_TKPDISFY_					0	0	0			REV__ENST00000521384.5_1_5:21751848-21889748:-|nuORF	REV__ENST00000521384.5_1_5:21751848-21889748:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.748046875	2	485.74765	969.480748	-0.29799	-0.00014475	0.68554	0.000333	0.38755	0.00018825	485.7476649449654	70.079	0.66228	69.811	69.536	70.198	-0.26725					53	15	4	0	0	0	0.56592	1	8142	8142		79.451	5.4763	1	1456900	+		78948	24943	55158	55250	86979	86979					-0.00521323713712718
TKPDTPDVV	9	Unmodified	_TKPDTPDVV_					0	0	0			REV__ENSG00000137817|ENST00000569795|PARP6	REV__ENSG00000137817|ENST00000569795|PARP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.3132629394531	2	486.25584	970.497126	-0.64019	-0.0003113	0.50909	0.00024755	-0.1311	-6.3747E-05	486.25598527275065	40.034	0.4568	39.922	39.677	40.134	-0.11223					24	11	3	0	0	0	0.024457	1	3499	3499		21.96	0	1	471980	+		78949	23786	55159	55251	86980	86980					0.01069757452387421
TKPKDVKPI	9	Unmodified	_TKPKDVKPI_					0	0	0		nc|ENSG00000142611|Q9HAZ2-4|PRDM16;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16	nc|ENSG00000142611|Q9HAZ2-4|PRDM16	nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.3232421875	2	513.321317	1024.62808	0.67662	0.00034732	3.7044	0.0019016	4.381	0.0022489	513.3230185400292	96.83	0.93877	96.693	96.346	97.285	-0.13671					41	20	4	0	0	0	0.34489	1	11967	11967		69.628	11.816	1	285400			78950	5575	55160	55252	86981	86981					0.11675192891084407
TKPKKAKKP	9	Unmodified	_TKPKKAKKP_					0	0	0			REV__ENSG00000189060|ENST00000340857|H1-0	REV__ENSG00000189060|ENST00000340857|H1-0	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.334228515625	2	513.345126	1024.6757	-0.011302	-5.8019E-06	-1.7064	-0.00087597	-1.7177	-0.00088177	513.3440591320652	49.866	0.36941	49.714	49.52	49.889	-0.1512					16	9	2	0	0	0	0.024484	1	5140	5140		23.523	0	1	153270	+		78951	28094	55161	55253	86982	86982					0.16434891881931435
TKPKTPPK	8	Unmodified	_TKPKTPPK_					0	0	0		nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16	nc|ENSG00000214050|Q8IX29-2|FBXO16	nc|ENSG00000214050|Q8IX29-2|FBXO16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	449.2617492675781	2	448.781828	895.549102	0.22239	9.9803E-05	-0.2304	-0.0001034	-0.0080161	-3.5975E-06	448.7815927971467	41.466	0.88622	41.343	40.98	41.866	-0.12317					73	24	4	0	0	0	0.027866	1	3687	3687		30.504	0	1	1919300			78952	10540	55162	55254	86983	86983					0.09714965656803543
TKPLGSSGT	9	Unmodified	_TKPLGSSGT_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.2186584472656	2	424.229625	846.444697	0.87337	0.00037051	3.7095	0.0015737	4.5829	0.0019442	424.2307758786381	99.078	0.20185	98.943	98.771	98.973	-0.13526					5	4	2	0	0	0	0.024397	1	12274	12274		31.53	3.6476	1	18101			78953	10440	55163	55255	86984	86984					0.015332191094330483
TKPPAKVVVPT	11	Unmodified	_TKPPAKVVVPT_					0	0	0		BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant;BCAR1|p.P641Lfs*61|1|0.13|ENSG00000050820|chr16:75234977-75234977|G/-|frameshift_variant;nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.8533935546875	2	568.855524	1135.69649	-0.46285	-0.00026329	-3.4276	-0.0019498	-3.8904	-0.0022131	568.8534480412821	101.18	1.7422	101.17	100.85	102.59	-0.0054398					103	39	5	0	0	0	1.0344	1	12894	12894		29.17	1.2878	1	8581000			78954	180	55164	55256	86985	86985					0.1340743747093711
TKPPAKVVVPT	11	Unmodified	_TKPPAKVVVPT_					0	0	0		BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant;BCAR1|p.P641Lfs*61|1|0.13|ENSG00000050820|chr16:75234977-75234977|G/-|frameshift_variant;nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.8534545898438	2	568.855524	1135.69649	0.53704	0.0003055	-4.4255	-0.0025175	-3.8885	-0.002212	568.8529077944462	101.24	1.8533	101.1	100.77	102.62	-0.13156					114	42	5	0	0	0	0.98542	1	12557	12557		40.058	4.4399	1	7301700			78955	180	55164	55256	86986	86986					0.1340743747093711
TKPPAKVVVPT	11	Unmodified	_TKPPAKVVVPT_					0	0	0		BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant;BCAR1|p.P641Lfs*61|1|0.13|ENSG00000050820|chr16:75234977-75234977|G/-|frameshift_variant;nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	BCAR1|p.P415Qfs*56|1|0.22|ENSG00000050820|chr16:75235655-75235655|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.853271484375	2	568.855524	1135.69649	0.4982	0.0002834	-4.3566	-0.0024783	-3.8584	-0.0021948	568.8529419921376	101.21	1.9311	101.08	100.74	102.68	-0.12576					119	46	5	0	0	0	0.98542	1	12576	12576		40.058	2.8991	1	6969500			78956	180	55164	55256	86987	86987					0.1340743747093711
TKPPAPLLPQ	10	Unmodified	_TKPPAPLLPQ_					0	0	0			REV__ENSG00000183060|ENST00000684762|LYSMD4	REV__ENSG00000183060|ENST00000684762|LYSMD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2955322265625	2	531.321317	1060.62808	-0.44247	-0.00023509	0.63266	0.00033614	0.19019	0.00010105	531.3215103578901	77.57	0.50121	77.584	77.317	77.819	0.013504					37	11	4	0	0	0	0.03519	1	9528	9528		23.523	0	1	1131100	+		78957	27532	55165	55257	86988	86988					0.10019192891104467
TKPPKAELIAI	11	Unmodified	_TKPPKAELIAI_					0	0	0		ENSG00000163645|ENST00000295910|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;nc|ENSG00000163645|Q7L0X2-3|ERICH6	ENSG00000163645|ENST00000295910|ERICH6	ENSG00000163645|ENST00000295910|ERICH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.86669921875	2	590.868631	1179.72271	-0.71437	-0.0004221	-3.3233	-0.0019636	-4.0377	-0.0023857	590.8669241812987	102.37	1.1116	102.25	101.89	103	-0.12666					79	26	5	0	0	0	1.0281	1	12745	12745		30.569	4.9948	1	4456200			78958	7125	55166	55258	86989	86989					0.14003706642415636
TKPPRPPI	8	Unmodified	_TKPPRPPI_					0	0	0			REV__ENST00000340545.9_1_15:37393341-37393500:-|nuORF	REV__ENST00000340545.9_1_15:37393341-37393500:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2686462402344	2	453.281995	904.549437	-0.1407	-6.3778E-05	-1.2671	-0.00057434	-1.4078	-0.00063811	453.28143662819673	25.556	0.37906	25.384	25.2	25.579	-0.17151					10	8	2	0	0	0	0.027866	1	1203	1203		13.775	0	1	30270	+		78959	30618	55167	55259	86990	86990					0.0933438537664415
TKPRQKRGY	9	Unmodified	_TKPRQKRGY_					0	0	0			REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF	REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.32958984375	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.96322	1	11630	11630		27.882	1.1893	1	14972000	+		78960	28993	55168	55260	86991	86991					0.0855074758567298
TKPRVDVGR	9	Unmodified	_TKPRVDVGR_					0	0	0		ENSG00000157617|ENST00000380486|C2CD2;nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	ENSG00000157617|ENST00000380486|C2CD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3106689453125	2	514.30399	1026.59343	-0.94284	-0.00048491	-3.2859	-0.00169	-4.2288	-0.0021749	514.3024897025415	64.666	0.64014	64.712	64.448	65.089	0.045502					26	16	2	0	0	0	0.024209	1	7567	7567		47.657	0	1	329200			78961	6612	55169	55261	86992	86992					0.0811936980298924
TKQCWGCSM	9	Unmodified	_TKQCWGCSM_					0	0	0			REV__nc|ENSG00000205189|Q96DT7-3|ZBTB10	REV__nc|ENSG00000205189|Q96DT7-3|ZBTB10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2717895507812	2	522.208998	1042.40344	-0.27361	-0.00014288	-0.60271	-0.00031474	-0.87633	-0.00045763	522.2088262499815	42.458	0.13577	42.326	42.251	42.386	-0.13219					5	3	2	0	0	0	0.02435	1	3878	3878		34.173	0	1	53671	+		78962	28665	55170	55262	86993	86993					-0.11606324517561006
TKQEEEKK	8	Unmodified	_TKQEEEKK_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7901306152344	2	510.272021	1018.52949	-0.51903	-0.00026485	-0.21619	-0.00011031	-0.73522	-0.00037516	510.2742320383396	43.216	0.53561	42.978	42.639	43.174	-0.23737					23	13	4	0	0	0	0.027866	1	3922	3922		27.882	1.1893	1	99017			78963	2390	55171	55263	86994	86994					0.020965448553738497
TKQFLKGLK	9	Unmodified	_TKQFLKGLK_					0	0	0		ENST00000472756.1_1_1:150064132-150064506:+|nuORF;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45	ENST00000472756.1_1_1:150064132-150064506:+|nuORF	ENST00000472756.1_1_1:150064132-150064506:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8094482421875	2	531.837134	1061.65972	-0.97764	-0.00051995	-3.2497	-0.0017283	-4.2274	-0.0022483	531.8354684642904	47.795	0.19006	47.795	47.685	47.875	0					8	5	2	0	0	0	0.024495	1	4832	4832		26.693	5.746	1	222940			78964	5032	55172	55264	86995	86995					0.1313518564502374
TKQHRRLLKLR	11	Unmodified	_TKQHRRLLKLR_					0	0	0			REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2925109863281	3	483.647671	1447.92118	-0.15057	-7.2823E-05	-1.8328	-0.00088643	-1.9834	-0.00095925	483.64669192606243	55.301	1.443	55.151	54.229	55.672	-0.15036					56	40	2	0	0	0	0.02486	1	6105	6105		8.7993	0.39205	1	110750	+		78965	23238	55173	55265	86996	86996					0.2151398506462101
TKQIIKGYHDF	11	Unmodified	_TKQIIKGYHDF_					0	0	0			REV__nc|ENSG00000078319|A4D2B8-3|PMS2P1	REV__nc|ENSG00000078319|A4D2B8-3|PMS2P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7613220214844	3	450.578588	1348.71394	-0.87573	-0.00039458	-1.5491	-0.00069799	-2.4248	-0.0010926	450.9113830330114	38.931	0.38053	38.766	38.59	38.971	-0.16459					15	10	2	0	0	0	0.024779	1	3228	3228		16.53	0	1	320260	+		78966	36479	55174	55266	86997	86997					0.05352733005929622
TKQKKKLR	8	Unmodified	_TKQKKKLR_					0	0	0			REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|12|3|sense	REV__AluSx_dup71151|chr11:64318596-64318908:-|1.2644918388135786|0.4573538105707593|1.47|518.0|12|3|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3115844726562	2	515.3482	1028.68185	0.44231	0.00022794	1.902	0.00098018	2.3443	0.0012081	515.3492175351844	20.126	0.28817	19.903	19.829	20.117	-0.22344					8	5	2	0	0	0	0.027866	1	496	496		73.975	19.21	1	20151	+		78967	19128	55175	55267	86998	86998					0.16865410113450707
TKQKTKKKQ	9	Unmodified	_TKQKTKKKQ_					0	0	0			REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|14|2|sense	REV__L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|14|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.32421875	2	559.356222	1116.69789	0.25027	0.00013999	2.6789	0.0014984	2.9291	0.0016384	559.3576158937883	68.414	1.4644	68.433	67.855	69.319	0.018913					57	38	2	0	0	0	0.024397	1	8070	8070		31.53	5.9558	1	228440	+		78968	36245	55176	55268	86999	86999					0.1442107155969552
TKQLKEPRERQ	11	Unmodified	_TKQLKEPRERQ_					0	0	0			REV__ENST00000367996.5_1_1:161168587-161168812:-|nuORF	REV__ENST00000367996.5_1_1:161168587-161168812:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.74322509765625	3	471.603797	1411.78956	0.23934	0.00011288	4.2984	0.0020271	4.5377	0.00214	471.6059587285614	47.471	0.44484	47.471	47.146	47.591	0					14	12	2	0	0	0	0.024767	1	4739	4739		25.068	12.11	1	213020	+		78969	31039	55177	55269	87000	87000					0.10013710186194658
TKQLSLIHS	9	Unmodified	_TKQLSLIHS_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.334228515625	2	513.800749	1025.58694	-0.135	-6.9364E-05	0.28076	0.00014425	0.14575	7.4889E-05	513.8006337846992	49.577	0.48865	49.426	49.182	49.671	-0.1512					28	12	3	0	0	0	0.024447	1	5140	5140		32.812	11.865	1	867250	+		78970	26756	55178	55270	87001	87001					0.07517431851601941
TKQLSLIHS	9	Unmodified	_TKQLSLIHS_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.800749	1025.58694	0.19773	0.00010159	2.039	0.0010476	2.2367	0.0011492	513.8022795837804	49.341	0.68048	49.341	48.864	49.544	0	-0.026161	0.001096	NaN	32.812	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	840460	+		78971	26756	55178	55270							0.07517431851601941
TKQLSLIHS	9	Unmodified	_TKQLSLIHS_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.800749	1025.58694	-1.8045	-0.00092717	4.0786	0.0020956	2.2741	0.0011684	513.8030271369088	49.26	0.73291	49.334	48.807	49.54	0.074196	-0.033016	0.0031919	NaN	32.812	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890410	+		78972	26756	55178	55270							0.07517431851601941
TKQPDPLL	8	Unmodified	_TKQPDPLL_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.77862548828125	2	456.263468	910.512382	0.68624	0.00031311	3.6426	0.001662	4.3288	0.0019751	456.2650368426747	41.916	1.3172	41.916	41.615	42.932	0					66	37	2	0	0	0	0.027866	1	3982	3982		30.504	1.3541	1	770580	+		78973	23341	55179	55271	87002	87002					0.053546690402299646
TKQPDPLL	8	Unmodified	_TKQPDPLL_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.263468	910.512382	0.17055	7.7815E-05	4.3668	0.0019924	4.5374	0.0020702	456.2653794320712	42.101	1.1858	42.127	41.784	42.97	0.026012	0.13899	0.00017129	NaN	23.042	63	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1028600	+		78974	23341	55179	55271							0.053546690402299646
TKQRLSAQP	9	Unmodified	_TKQRLSAQP_					0	0	0			REV__ENST00000447510.6_1_4:16077534-16077723:-|nuORF	REV__ENST00000447510.6_1_4:16077534-16077723:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3130493164062	2	514.795998	1027.57744	0.045151	2.3243E-05	3.1935	0.001644	3.2386	0.0016672	514.7970864696464	88.703	0.38802	88.719	88.45	88.838	0.015915					11	8	2	0	0	0	0.024418	1	11080	11080		23.523	0	1	68882	+		78975	32649	55180	55272	87003	87003					0.06475663566061485
TKQVVRAIQ	9	Unmodified	_TKQVVRAIQ_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.8001098632812	2	521.822015	1041.62948	-0.80725	-0.00042124	0.91623	0.00047811	0.10898	5.6871E-05	521.8223371148416	48.159	0.64214	48.006	47.827	48.469	-0.15301					38	18	3	0	0	0	0.024523	1	4947	4947		21.96	7.095	1	1737800	+		78976	25714	55181	55273	87004	87004					0.11032826979840138
TKQVVRAIQ	9	Unmodified	_TKQVVRAIQ_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.822015	1041.62948	-0.99126	-0.00051726	1.2946	0.00067555	0.30333	0.00015829	521.8225083020045	47.987	0.60193	47.987	47.811	48.413	0	0.0076646	0.00021967	NaN	26.693	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1746100	+		78977	25714	55181	55273							0.11032826979840138
TKQVVRAIQ	9	Unmodified	_TKQVVRAIQ_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.822015	1041.62948	-0.74699	-0.00038979	1.0649	0.0005557	0.31793	0.0001659	521.822381794314	47.88	0.55468	47.945	47.745	48.3	0.065331	-0.034602	-2.0028E-05	NaN	26.693	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1618900	+		78978	25714	55181	55273							0.11032826979840138
TKRDVPGF	8	Unmodified	_TKRDVPGF_					0	0	0		ENST00000587861.5_1_19:10822805-10823081:+|nuORF;ENST00000421333.6_1_19:10818158-10823081:+|nuORF;ENST00000589488.5_1_19:10812118-10823081:+|nuORF;ENSG00000213339|ENST00000250237|QTRT1	ENST00000587861.5_1_19:10822805-10823081:+|nuORF	ENST00000587861.5_1_19:10822805-10823081:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2685241699219	2	460.253434	918.492316	-0.36307	-0.00016711	1.2351	0.00056848	0.87207	0.00040137	460.2537397786647	48.43	0.58274	48.43	48.072	48.654	0					20	16	2	0	0	0	0.027866	1	4899	4899		14.137	0	1	144260			78979	10500	55182	55274	87005	87005					0.029809181002860896
TKREEVLS	8	Unmodified	_TKREEVLS_					0	0	0			REV__nc|ENSG00000138769|Q92772|CDKL2	REV__nc|ENSG00000138769|Q92772|CDKL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29351806640625	2	481.269281	960.52401	0.10848	5.221E-05	-3.7848	-0.0018215	-3.6763	-0.0017693	481.2673945121325	56.168	0.42519	56.168	55.999	56.424	0					15	11	2	0	0	0	0.027866	1	6257	6257		35.618	0	1	211790	+		78980	23896	55183	55275	87006	87006					0.04216866063575253
TKRGLLRH	8	Unmodified	_TKRGLLRH_					0	0	0			REV__ENST00000575894.1_1_16:697354-697711:+|nuORF	REV__ENST00000575894.1_1_16:697354-697711:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.57952880859375	2	490.809242	979.603932	2.111	0.0010361	-2.0212	-0.00099201	0.089785	4.4067E-05	490.80793668568543	19.176	0.39562	18.943	18.78	19.176	-0.23345					12	7	2	0	0	0	0.027866	1	393	393		26.693	10.22	1	17617	+		78981	35466	55184	55276	87007	87007					0.11331397248068242
TKRHRVLHERW	11	Unmodified	_TKRHRVLHERW_					0	0	0			REV__nc|ENSG00000167685|Q8N0Y2-2|ZNF444	REV__nc|ENSG00000167685|Q8N0Y2-2|ZNF444	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7041015625	3	506.623525	1516.84875	-0.44705	-0.00022649	-1.5024	-0.00076117	-1.9495	-0.00098765	506.6227192683431	32.516	0.44292	32.358	32.121	32.564	-0.15772					16	10	2	0	0	0	0.024869	1	2196	2196		11.932	0	1	192780	+		78982	26179	55185	55277	87008	87008					0.1109965099103647
TKRHVWEWLQF	11	Unmodified	_TKRHVWEWLQF_					0	0	0		nc|ENSG00000135374|Q9UKW6-3|ELF5;ENSG00000135374|ENST00000257832|ELF5;nc|ENSG00000135374|Q9UKW6|ELF5	nc|ENSG00000135374|Q9UKW6-3|ELF5	nc|ENSG00000135374|Q9UKW6-3|ELF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7902526855469	3	510.605249	1528.79392	-0.092901	-4.7436E-05	1.5321	0.00078229	1.4392	0.00073485	510.60615803082743	42.986	0.34085	42.873	42.693	43.034	-0.11253					13	8	2	0	0	0	0.024856	1	3916	3916		7.3413	4.3154	1	127680			78983	4887	55186	55278	87009	87009					0.050672193997797876
TKRIKSQKRRR	11	Unmodified	_TKRIKSQKRRR_					0	0	0			REV__ENST00000416614.6_1_4:2949288-2950050:-|nuORF	REV__ENST00000416614.6_1_4:2949288-2950050:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.3000793457031	3	486.314692	1455.92225	-0.095005	-4.6202E-05	-3.634	-0.0017672	-3.729	-0.0018134	486.31300952210177	57.791	0.33741	57.791	57.719	58.056	0					11	8	2	0	0	0	0.02484	1	6559	6559		12.433	3.6335	1	733720	+		78984	32082	55187	55279	87010	87010					0.21252199433502028
TKRIKSQKRRR	11	Unmodified	_TKRIKSQKRRR_					0	0	0			REV__ENST00000416614.6_1_4:2949288-2950050:-|nuORF	REV__ENST00000416614.6_1_4:2949288-2950050:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.3005676269531	3	486.314692	1455.92225	-0.78897	-0.00038369	-2.7461	-0.0013355	-3.5351	-0.0017192	486.3130436621399	58.143	0.21772	57.968	57.896	58.113	-0.1749					8	5	2	0	0	0	0.02486	1	6562	6562		5.4129	0	1	356880	+		78985	32082	55187	55279	87011	87011					0.21252199433502028
TKRIRFRA	8	Unmodified	_TKRIRFRA_					0	0	0			REV__ENSG00000178394|ENST00000323865|HTR1A	REV__ENSG00000178394|ENST00000323865|HTR1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.3139038085938	2	524.330342	1046.64613	-0.46877	-0.00024579	-0.0099229	-5.2029E-06	-0.4787	-0.00025099	524.3305990385048	73.322	0.16504	73.045	72.968	73.133	-0.2769					5	3	2	0	0	0	0.027866	1	8603	8603		12.959	2.6939	1	26975	+		78986	27184	55188	55280	87012	87012					0.12467372656442421
TKRKRRKHKT	10	Unmodified	_TKRKRRKHKT_					0	0	0			REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	447.26373291015625	3	446.956616	1337.84802	-0.78903	-0.00035266	-0.97906	-0.0004376	-1.7681	-0.00079026	446.9570711438353	46.125	0.52656	45.973	45.683	46.209	-0.15156					28	14	3	0	0	0	0.03519	1	4538	4538		15.333	0	1	200170	+		78987	28321	55189	55281	87013	87013					0.19260856341998078
TKRKRVVL	8	Unmodified	_TKRKRVVL_					0	0	0		ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	ENSG00000184984|ENST00000383263|CHRM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3132629394531	2	500.342918	998.671283	-0.28374	-0.00014197	-3.9509	-0.0019768	-4.2347	-0.0021188	500.34098940175534	76.122	0.12026	75.953	75.892	76.012	-0.16854					4	2	2	0	0	0	0.027866	1	9020	9020		11.511	0	1	36685			78988	9390	55190	55282	87014	87014					0.1718942745902723
TKRLFCCF	8	Unmodified	_TKRLFCCF_					0	0	0			REV__ENST00000523304.1_1_8:67526092-67526455:-|nuORF	REV__ENST00000523304.1_1_8:67526092-67526455:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3021545410156	2	509.254065	1016.49358	-0.23307	-0.00011869	1.5734	0.00080126	1.3403	0.00068257	509.2544984581705	55.124	1.2761	54.974	54.507	55.784	-0.15036					53	35	2	0	0	0	0.027866	1	6141	6141		31.955	2.8053	1	358840	+		78989	34354	55191	55283	87015	87015					-0.014009071268333173
TKRLKLAA	8	Unmodified	_TKRLKLAA_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-2|ZRANB3;ENST00000403017.2_1_2:135957914-136028945:-|nuORF	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.8033752441406	2	450.803094	899.591636	1.3606	0.00061338	-1.1977	-0.00053993	0.16294	7.3453E-05	450.8023329972208	19.487	0.93593	19.253	19.027	19.963	-0.23345					29	18	3	0	0	0	1.0574	1	421	421		19.36	0	1	203910			78990	3903	55192	55284	87016	87016					0.13782360785012315
TKRLPVGDL	9	Unmodified	_TKRLPVGDL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7696533203125	2	499.803291	997.59203	-0.24374	-0.00012182	-1.6938	-0.00084657	-1.9376	-0.0009684	500.3021898183455	65.311	0.099495	65.311	65.226	65.326	0					4	2	2	0	0	0	0.024466	1	7725	7725		24.519	0	1	70134	+		78991	26810;37445	55193	55285	87017	87017					0.09313735714226823
TKRPNLLH	8	Unmodified	_TKRPNLLH_					0	0	0			REV__ENST00000519245.1_1_6:112457126-112460429:-|nuORF	REV__ENST00000519245.1_1_6:112457126-112460429:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.79400634765625	2	489.795801	977.577048	-0.40834	-0.0002	0.26521	0.0001299	-0.14313	-7.0104E-05	489.795828692075	22.129	0.79776	22.129	21.868	22.665	0					46	16	4	0	0	0	0.93274	1	747	747		47.916	3.7988	1	1269600	+		78992	34253	55194	55286	87018	87018					0.08736288636896461
TKRRAWCP	8	Unmodified	_TKRRAWCP_					0	0	0			REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	REV__ENST00000398988.7_2_17:25950782-25950866:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3021545410156	2	509.274178	1016.5338	-0.17495	-8.9097E-05	-1.8567	-0.00094557	-2.0317	-0.0010347	509.27180519352737	55.523	0.29773	55.367	55.293	55.591	-0.15602					11	7	2	0	0	0	0.027866	1	6141	6141		19.36	0	1	50128	+		78993	31816	55195	55287	87019	87019					0.0261977558794797
TKRRFAVHTL	10	Unmodified	_TKRRFAVHTL_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|19|2|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|19|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.5423278808594	3	410.247285	1227.72002	1.1894	0.00048796	-1.81	-0.00074255	-0.62057	-0.00025459	410.246282408759	22.972	1.043	22.781	22.205	23.248	-0.19117					37	22	3	0	0	0	0.03519	1	763	763		27.047	9.5793	1	151740	+		78994	36388	55196	55288	87020	87020					0.11527296028134515
TKRRFAVHTL	10	Unmodified	_TKRRFAVHTL_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|19|2|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|19|2|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	410.247285	1227.72002	0.4851	0.00019901	-0.23234	-9.5316E-05	0.25277	0.0001037	410.24698573828965	22.853	0.60738	22.664	22.42	23.027	-0.18894	-0.10204	0.00041589	NaN	27.047	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152550	+		78995	36388	55196	55288							0.11527296028134515
TKRRFAVHTL	10	Unmodified	_TKRRFAVHTL_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|19|2|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|3.58661392328352|0.036508973437587|6.62|487.0|19|2|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	410.247285	1227.72002	-0.16623	-6.8197E-05	0.035951	1.4749E-05	-0.13028	-5.3448E-05	410.24718961847435	23.039	0.72968	22.854	22.507	23.237	-0.18539	0.087506	0.00074609	NaN	27.047	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172210	+		78996	36388	55196	55288							0.11527296028134515
TKRRLEPT	8	Unmodified	_TKRRLEPT_					0	0	0		ENST00000393357.6_1_1:114281417-114301306:-|nuORF;ENST00000493212.1_1_1:114292198-114301306:-|nuORF	ENST00000393357.6_1_1:114281417-114301306:-|nuORF	ENST00000393357.6_1_1:114281417-114301306:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8235168457031	2	500.79854	999.582528	-0.021208	-1.0621E-05	-2.0151	-0.0010092	-2.0363	-0.0010198	500.7960520332783	42.122	0.16182	42.148	42.024	42.186	0.026016					8	4	2	0	0	0	0.027866	1	3788	3788		10.866	0	1	96331			78997	13446	55197	55289	87021	87021					0.08271967428709104
TKRRVKKI	8	Unmodified	_TKRRVKKI_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.8394775390625	2	514.856193	1027.69783	-0.40688	-0.00020948	-0.53605	-0.00027599	-0.94293	-0.00048548	514.8561994128048	57.439	0.28583	57.206	57.026	57.312	-0.23363					9	7	2	0	0	0	0.027866	1	6244	6244		18.324	6.1176	1	72611			78998	8561	55198	55290	87022	87022					0.18509116350355725
TKRSCKDSL	9	Unmodified	_TKRSCKDSL_					0	0	0			REV__ENSG00000179632|ENST00000322428|MAF1	REV__ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7928466796875	2	519.274041	1036.53353	-1.2083	-0.00062743	2.3864	0.0012392	1.1781	0.00061174	519.2757979893407	55.159	0.97442	55.257	54.696	55.671	0.098015					58	26	3	0	0	0	0.024495	1	6031	6031		19.997	4.355	1	331400	+		78999	27285	55199	55291	87023	87023					0.016723110774364613
TKRSLSSSAR	10	Unmodified	_TKRSLSSSAR_					0	0	0		ENST00000498692.1_1_13:114502897-114504649:+|nuORF	ENST00000498692.1_1_13:114502897-114504649:+|nuORF	ENST00000498692.1_1_13:114502897-114504649:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.2677001953125	2	546.809636	1091.60472	-1.488	-0.00081364	-3.2901	-0.0017991	-4.7781	-0.0026127	546.8079928285787	40.35	0.26067	40.373	40.199	40.46	0.023006					12	6	2	0	0	0	0.03519	1	3469	3469		28.081	0	1	76500			79000	15629	55200	55292	87024	87024					0.06258147106473189
TKRTDPFAV	9	Unmodified	_TKRTDPFAV_					0	0	0			REV__ENSG00000136379|ENST00000258884|ABHD17C	REV__ENSG00000136379|ENST00000258884|ABHD17C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.299072265625	2	517.785099	1033.55564	1.3528	0.00070047	-1.5485	-0.00080181	-0.19573	-0.00010135	518.2863799261844	59.066	0.50631	58.879	58.5	59.007	-0.18705					21	13	2	0	0	0	0.024477	1	6644	6644		14.865	0	1	171820	+		79001	23652	55201	55293	87025	87025					0.040208588175119075
TKRTDPFAV	9	Unmodified	_TKRTDPFAV_					0	0	0			REV__ENSG00000136379|ENST00000258884|ABHD17C	REV__ENSG00000136379|ENST00000258884|ABHD17C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	517.785099	1033.55564	0.26853	0.00013904	-0.85738	-0.00044394	-0.58885	-0.0003049	517.7843076999447	58.82	0.57732	58.82	58.457	59.035	0	0.018074	0.00030459	NaN	25.574	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171820	+		79002	23652	55201	55293							0.040208588175119075
TKRYIAFI	8	Unmodified	_TKRYIAFI_					0	0	0			REV__ENSG00000130957|ENST00000375337|FBP2	REV__ENSG00000130957|ENST00000375337|FBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.30029296875	2	506.302927	1010.5913	0.049479	2.5051E-05	-3.2096	-0.001625	-3.1602	-0.0016	506.3013302268512	95.575	0.99744	95.438	94.938	95.936	-0.13689					50	22	3	0	0	0	1.0574	1	11765	11765		20.947	0.95016	1	233580	+		79003	23172	55202	55294	87026	87026					0.0864294106518173
TKRYLFGF	8	Unmodified	_TKRYLFGF_					0	0	0			REV__ENSG00000015676|ENST00000355451|NUDCD3	REV__ENSG00000015676|ENST00000355451|NUDCD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.762939453125	2	516.287277	1030.56	-0.19299	-9.9636E-05	-0.98103	-0.00050649	-1.174	-0.00060613	516.2864128227039	42.312	0.64548	42.082	41.797	42.442	-0.23029					23	17	2	0	0	0	0.027866	1	3795	3795		19.36	0	1	135880	+		79004	19971	55203	55295	87027	87027					0.04594368031075646
TKSARLTK	8	Unmodified	_TKSARLTK_					0	0	0			REV__ENST00000388833.7_1_16:67841261-67854833:+|nuORF	REV__ENST00000388833.7_1_16:67841261-67854833:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2427978515625	2	452.782359	903.550165	1.4444	0.00065398	3.06	0.0013855	4.5044	0.0020395	452.78369063436736	59.847	0.39058	59.847	59.675	60.066	0					17	10	2	0	0	0	0.027866	1	6831	6831		10.866	0	1	168120	+		79005	31563	55204	55296	87028	87028					0.09453180025695929
TKSCPSWSSW	10	Carbamidomethyl (C)	_TKSC(Carbamidomethyl (C))PSWSSW_	TKSC(1)PSWSSW		TKSC(80)PSWSSW		0	1	0			REV__ENSG00000144229|ENST00000409968|THSD7B	REV__ENSG00000144229|ENST00000409968|THSD7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2706298828125	2	613.268955	1224.52336	-1.6522	-0.0010133	3.7967	0.0023284	2.1445	0.0013151	613.2716235554299	25.164	0.85566	24.937	24.538	25.394	-0.22683					70	19	6	0	0	0	0.57594	1	1190	1190		79.713	12.219	1	1793900	+		79006	24318	55205	55297	87029	87029	317				-0.07992296647785224
TKSDPLLIT	9	Unmodified	_TKSDPLLIT_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-3|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-3|SH3TC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2602844238281	2	494.289682	986.564812	0.78225	0.00038666	2.5122	0.0012418	3.2945	0.0016284	494.2905460429656	83.275	0.34234	83.185	82.915	83.257	-0.090454					10	7	2	0	0	0	0.024523	1	10368	10368		29.15	6.1071	1	60426	+		79007	36913	55206	55298	87030	87030					0.07099207383191697
TKSFHFGP	8	Unmodified	_TKSFHFGP_					0	0	0			REV__ENST00000528878.1_1_7:64465296-64465458:-|nuORF	REV__ENST00000528878.1_1_7:64465296-64465458:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7510986328125	2	460.734877	919.455202	0.13222	6.092E-05	1.6336	0.00075268	1.7659	0.0008136	460.73295066089577	34.195	0.18552	34.191	34.112	34.298	-0.0045624					7	4	2	0	0	0	0.027866	1	2535	2535		19.36	1.0356	1	49419	+		79008	34506	55207	55299	87031	87031					-0.00774753445477927
TKSHVLPPI	9	Unmodified	_TKSHVLPPI_					0	0	0			REV__nc|ENSG00000143702|Q5SW79-2|CEP170	REV__nc|ENSG00000143702|Q5SW79-2|CEP170	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.29034423828125	2	496.300384	990.586216	-0.15182	-7.5348E-05	3.8635	0.0019174	3.7116	0.0018421	496.3025151769539	50.56	0.40388	50.641	50.41	50.814	0.08099					24	11	3	0	0	0	0.024381	1	5257	5257		55.504	4.1688	1	185780	+		79009	24275	55208	55300	87032	87032					0.0905463720255284
TKSHVPSLLDA	11	Unmodified	_TKSHVPSLLDA_					0	0	0		ENSG00000143674|ENST00000366624|MAP3K21;nc|ENSG00000143674|Q5TCX8-3|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.3232421875	2	584.322045	1166.62954	-1.1142	-0.00065106	3.7174	0.0021722	2.6032	0.0015211	584.3240953922957	44.545	0.68924	44.44	44.134	44.823	-0.10468					52	17	4	0	0	0	0.64701	1	4158	4158		66.962	5.2706	1	2313200			79010	5679	55209	55301	87033	87033					0.05288782189199992
TKSIVYLID	9	Unmodified	_TKSIVYLID_					0	0	0			REV__ENST00000495332.1_1_X:83359500-83361456:-|nuORF	REV__ENST00000495332.1_1_X:83359500-83361456:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3072509765625	2	526.305332	1050.59611	-0.52369	-0.00027562	1.2413	0.0006533	0.7176	0.00037768	526.3057449381815	47.83	0.5508	47.732	47.451	48.002	-0.097553					30	14	3	0	0	0	0.024527	1	4748	4748		31.53	6.0796	1	789870	+		79011	20463	55210	55302	87034	87034					0.07283780417265007
TKSIVYLID	9	Unmodified	_TKSIVYLID_					0	0	0			REV__ENST00000495332.1_1_X:83359500-83361456:-|nuORF	REV__ENST00000495332.1_1_X:83359500-83361456:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.305332	1050.59611	-0.78512	-0.00041321	1.3834	0.00072808	0.59826	0.00031487	526.3056932466592	48.173	0.55596	47.897	47.595	48.151	-0.27598	0.10112	0.00062896	NaN	31.53	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706170	+		79012	20463	55210	55302							0.07283780417265007
TKSIVYLID	9	Unmodified	_TKSIVYLID_					0	0	0			REV__ENST00000495332.1_1_X:83359500-83361456:-|nuORF	REV__ENST00000495332.1_1_X:83359500-83361456:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.305332	1050.59611	0.31764	0.00016717	-0.051498	-2.7104E-05	0.26614	0.00014007	526.305094613645	47.945	0.52078	47.758	47.457	47.978	-0.18684	-0.037896	-0.00088141	NaN	31.53	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	683030	+		79013	20463	55210	55302							0.07283780417265007
TKSLLDASEEA	11	Unmodified	_TKSLLDASEEA_					0	0	0		nc|ENSG00000035403|P18206-2|VCL;ENSG00000035403|ENST00000211998|VCL;VCL-ADK|2|fusion;VCL-ADK|1|fusion;VCL-ADK|4|fusion;VCL-ADK|13|fusion	nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|1|fusion	VCL-ADK|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.8323974609375	2	582.29315	1162.57175	-0.16778	-9.7696E-05	0.50463	0.00029384	0.33685	0.00019615	582.2933240542061	74.929	1.0661	74.746	74.434	75.5	-0.18279					48	25	2	0	0	0	0.024643	1	8849	8849		47.96	0	1	941680			79014	1030;38140	55211	55303	87035	87035					-0.0030352452690749487
TKSLVLRR	8	Unmodified	_TKSLVLRR_					0	0	0			REV__ENST00000568087.5_1_15:74202119-74212212:-|nuORF	REV__ENST00000568087.5_1_15:74202119-74212212:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7952575683594	2	486.819276	971.623999	0.19925	9.6996E-05	3.765	0.0018329	3.9642	0.0019298	486.8209026736422	37.029	0.57699	36.836	36.537	37.114	-0.193					32	14	3	0	0	0	0.027866	1	2905	2905		26.796	8.4717	1	364910	+		79015	35334	55212	55304	87036	87036					0.13705148188034855
TKSNGKFDC	9	Unmodified	_TKSNGKFDC_					0	0	0			REV__ENST00000371997.3_1_20:46252774-46254143:+|nuORF	REV__ENST00000371997.3_1_20:46252774-46254143:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.313232421875	2	500.231842	998.44913	-0.12137	-6.0711E-05	-0.056576	-2.8301E-05	-0.17794	-8.9012E-05	500.2313164030958	76.176	0.27137	75.918	75.784	76.056	-0.25866					10	6	2	0	0	0	0.024447	1	9030	9030		25.574	9.9322	1	101170	+		79016	31187	55213	55305	87037	87037					-0.05015639739326616
TKSPDAVSI	9	Unmodified	_TKSPDAVSI_					0	0	0			REV__ENSG00000184544|ENST00000571134|DHRS7C	REV__ENSG00000184544|ENST00000571134|DHRS7C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2845153808594	2	459.250557	916.486562	-0.059878	-2.7499E-05	-2.0706	-0.00095094	-2.1305	-0.00097844	459.2455376061964	56.412	1.041	56.412	55.927	56.968	0					57	29	4	0	0	0	0.023239	1	6303	6303		45.972	0	1	202530	+		79017	27679	55214	55306	87038	87038					0.024977747979505693
TKSPPHDY	8	Unmodified	_TKSPPHDY_					0	0	0		ENST00000471355.5_1_2:219093513-219093687:+|nuORF	ENST00000471355.5_1_2:219093513-219093687:+|nuORF	ENST00000471355.5_1_2:219093513-219093687:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7616882324219	2	472.727249	943.439946	0.13926	6.5834E-05	3.4685	0.0016397	3.6078	0.0017055	472.728716817571	33.527	2.6327	33.527	32.531	35.164	0					132	69	3	0	0	0	0.027866	1	2276	2276		52.299	18.784	1	480550			79018	14955	55215	55307	87039	87039					-0.034036650333405305
TKSRLNGTAF	10	Unmodified	_TKSRLNGTAF_					0	0	0			REV__POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	REV__POLR1B|p.F883Lfs*11|1|0.25|ENSG00000125630|chr2:112574968-112574968|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2767333984375	2	547.80128	1093.58801	-0.97769	-0.00053558	-0.23489	-0.00012868	-1.2126	-0.00066426	547.7991180782697	29.592	0.72756	29.347	28.967	29.695	-0.24524					40	16	4	0	0	0	0.03519	1	1771	1771		9.7057	0	1	482310	+		79019	22828	55216	55308	87040	87040					0.04495646220493654
TKSSKKKVK	9	Unmodified	_TKSSKKKVK_					0	0	0			REV__ENST00000556211.1_1_14:35627286-35627364:-|nuORF	REV__ENST00000556211.1_1_14:35627286-35627364:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2568359375	2	517.340041	1032.66553	1.2703	0.0006572	2.1685	0.0011219	3.4389	0.0017791	517.3410239137644	25.031	0.2617	24.859	24.688	24.95	-0.17151					8	5	2	0	0	0	0.024447	1	1132	1132		40.778	15.204	1	36400	+		79020	35029	55217	55309	87041	87041					0.150502841567004
TKSSRTFRL	9	Unmodified	_TKSSRTFRL_					0	0	0			REV__ENST00000335509.10_1_12:113734652-113734793:+|nuORF	REV__ENST00000335509.10_1_12:113734652-113734793:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2767333984375	2	548.317097	1094.61964	-0.54101	-0.00029665	-3.566	-0.0019553	-4.107	-0.0022519	548.3149990760069	35.189	0.34963	34.976	34.766	35.115	-0.21246					13	8	2	0	0	0	0.024523	1	2622	2622		29.15	0	1	95856	+		79021	30533	55218	55310	87042	87042					0.07611638974481139
TKSTELSL	8	Unmodified	_TKSTELSL_					0	0	0		ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7457580566406	2	439.745108	877.475663	-0.49829	-0.00021912	-0.28518	-0.00012541	-0.78347	-0.00034453	439.745390106132	34.236	1.4248	34.061	33.146	34.571	-0.17557					68	35	4	0	0	0	0.027866	1	2539	2539		27.882	0	1	1040500			79022	7025	55219	55311	87043	87043					0.03202372423686484
TKSWKGLPD	9	Unmodified	_TKSWKGLPD_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.2886352539062	2	516.279649	1030.54475	-0.80173	-0.00041392	0.68995	0.00035621	-0.11177	-5.7707E-05	516.2797097627283	34.321	0.43738	34.145	33.896	34.334	-0.17557					20	10	3	0	0	0	0.024427	1	2495	2495		26.693	4.733	1	152070	+		79023	21929	55220	55312	87044	87044					0.030694564432451443
TKTAVSRPL	9	Unmodified	_TKTAVSRPL_					0	0	0		ENSG00000179988|ENST00000406217|PSTK;nc|ENSG00000179988|Q8IV42-2|PSTK;nc|ENSG00000179988|Q8IV42|PSTK;ENST00000493461.1_1_10:124742263-124743062:+|nuORF	ENSG00000179988|ENST00000406217|PSTK	ENSG00000179988|ENST00000406217|PSTK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3105773925781	2	486.795466	971.57638	-0.040168	-1.9554E-05	4.2244	0.0020564	4.1843	0.0020369	486.7973472081295	75.254	0.50124	74.98	74.765	75.266	-0.27382					28	11	4	0	0	0	0.024511	1	8860	8860		19.104	0	1	167250			79024	8952	55221	55313	87045	87045					0.08945449197187827
TKTEWKLL	8	Unmodified	_TKTEWKLL_					0	0	0		ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	ENSG00000189420|ENST00000338647|ZFP92	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7839660644531	2	509.800217	1017.58588	0.3369	0.00017175	0.32102	0.00016365	0.65791	0.0003354	510.30246956494386	49.907	0.2562	49.726	49.532	49.788	-0.18071					8	6	2	0	0	0	0.027866	1	5019	5019		34.173	0	1	117600			79025	9811	55222	55314	87046	87046					0.07779217482709555
TKTHKVDL	8	Unmodified	_TKTHKVDL_					0	0	0		ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.2843017578125	2	471.274367	940.53418	-0.085212	-4.0158E-05	0.37483	0.00017665	0.28962	0.00013649	471.2743011616136	51.381	0.50616	51.231	50.933	51.439	-0.14916					22	13	2	0	0	0	0.027866	1	5393	5393		20.947	4.4738	1	564070			79026	2517	55223	55315	87047	87047					0.061534737887996016
TKTIKTSH	8	Unmodified	_TKTIKTSH_					0	0	0		nc|ENSG00000164327|Q6R327-3|RICTOR;ENSG00000164327|ENST00000357387|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	nc|ENSG00000164327|Q6R327-3|RICTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.80517578125	2	458.266542	914.51853	0.35483	0.00016261	0.007543	3.4567E-06	0.36237	0.00016606	458.26626050490796	23.162	0.32725	22.96	22.78	23.107	-0.20193					9	6	2	0	0	0	0.027866	1	886	886		26.796	0	1	31253			79027	18456	55224	55316	87048	87048					0.05785187271760606
TKTIQAEF	8	Unmodified	_TKTIQAEF_					0	0	0		ENSG00000136999|ENST00000259526|CCN3	ENSG00000136999|ENST00000259526|CCN3	ENSG00000136999|ENST00000259526|CCN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.2539367675781	2	469.2531	936.491647	-0.060418	-2.8352E-05	0.17171	8.0575E-05	0.11129	5.2223E-05	469.2530207597656	77.062	0.66236	76.851	76.544	77.206	-0.21087					25	15	2	0	0	0	1.0574	1	9493	9493		26.796	0.10319	1	1323100			79028	5080	55225	55317	87049	87049					0.020860786605680914
TKTITAVDL	9	Unmodified	_TKTITAVDL_					0	0	0			REV__nc|ENSG00000111581|P57740-2|NUP107	REV__nc|ENSG00000111581|P57740-2|NUP107	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2816467285156	2	481.281857	960.549162	-0.2328	-0.00011204	0.33446	0.00016097	0.10165	4.8925E-05	481.28189540539114	46.239	0.76473	46.291	46.031	46.796	0.051395					63	21	4	0	0	0	0.14024	1	4501	4501		101.6	2.9713	1	4519700	+		79029	21925	55226	55318	87050	87050					0.06730920866129964
TKTKKQTTL	9	Unmodified	_TKTKKQTTL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000147689|Q86UY5-3|FAM83A	nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000147689|Q86UY5-3|FAM83A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.269287109375	2	524.821681	1047.62881	-1.0987	-0.00057661	-4.2372	-0.0022238	-5.3359	-0.0028004	524.819332006298	35.04	0.33179	35.018	34.79	35.122	-0.021763					13	8	2	0	0	0	0.024466	1	2647	2647		24.519	6.2571	1	108280			79030	18271;18365	55227	55319	87051	87051					0.10689987540149559
TKTLTQCDD	9	Unmodified	_TKTLTQCDD_					0	0	0			REV__ERBB3|p.E200D|1|0.23|ENSG00000065361|chr12:56087629-56087629|A/T|missense_variant	REV__ERBB3|p.E200D|1|0.23|ENSG00000065361|chr12:56087629-56087629|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.76861572265625	2	512.734414	1023.45428	0.14137	7.2484E-05	-3.3098	-0.0016971	-3.1685	-0.0016246	512.7323515833283	69.247	1.0591	69.004	68.307	69.366	-0.24277					28	13	3	0	0	0	0.024389	1	7997	7997		28.081	0.19925	1	325080	+		79031	36009	55228	55320	87052	87052					-0.056513806673592626
TKTMSVALVL	10	Unmodified	_TKTMSVALVL_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8170166015625	2	531.81501	1061.61547	-0.26415	-0.00014048	3.569	0.0018981	3.3049	0.0017576	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	1.0002	1	11098	11098		45.972	3.5761	1	3741200	+		79032	26525	55229	55321	87053	87053					0.0871241343654674
TKTMSVALVL	10	Unmodified	_TKTMSVALVL_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8173217773438	2	531.81501	1061.61547	0.30294	0.00016111	2.8637	0.001523	3.1666	0.0016841	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.94316	1	11023	11023		51.193	0	1	3405600	+		79033	26525	55229	55321	87054	87054					0.0871241343654674
TKTVKMLTEF	10	Unmodified	_TKTVKMLTEF_					0	0	0		ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	598.8500366210938	2	599.331024	1196.6475	-0.37654	-0.00022567	-2.1381	-0.0012815	-2.5147	-0.0015071	599.3297699828469	97.016	0.57906	96.855	96.595	97.174	-0.16106					32	12	4	0	0	0	0.03519	1	11960	11960		28.081	3.5623	1	255100			79034	11787	55230	55322	87055	87055					0.05703781119677842
TKVAVKLI	8	Unmodified	_TKVAVKLI_					0	0	0			REV__ENSG00000167601|ENST00000301178|AXL	REV__ENSG00000167601|ENST00000301178|AXL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.5226745605469	2	436.302396	870.590239	-0.49158	-0.00021448	0.42577	0.00018576	-0.065814	-2.8715E-05	436.30245646044443	48.058	0.51551	47.782	47.527	48.043	-0.27598					24	13	2	0	0	0	0.027866	1	4746	4746		23.042	0	1	264510	+		79035	26160	55231	55323	87056	87056					0.14976726696284004
TKVCFLEKK	9	Unmodified	_TKVCFLEKK_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.Q533Pfs*31|1|0.11|ENSG00000137628|chr4:168283570-168283571|-/CTTTTATCAG|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.277099609375	2	548.315177	1094.6158	-0.72394	-0.00039695	-1.3458	-0.00073792	-2.0697	-0.0011349	548.3153286367972	35.101	0.34048	34.914	34.76	35.1	-0.18675					16	8	3	0	0	0	0.024495	1	2611	2611		19.997	7.7899	1	84047			79036	5140	55232	55324	87057	87057					0.07227833156366614
TKVFLITIT	9	Unmodified	_TKVFLITIT_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MSMS	OPSCC_39_ClassI_Rep-3	3	518.2765502929688	2	518.326068	1034.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.111	1	62.174	61.674	62.674	0.062767								0	0	0	0.56622	1	7139	7139		44.117	0	1		+		79037	21658	55233	55325	87058	87058					0.12164961176608813
TKVFTASSA	9	Unmodified	_TKVFTASSA_					0	0	0		UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant;UBAP2|p.G525Qfs*7|1|0.16|ENSG00000137073|chr9:33943559-33943562|AACC/-|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant	UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.1558532714844	2	456.245275	910.475997	0.0053806	2.4549E-06	1.5231	0.00069491	1.5285	0.00069736	456.2457367217638	39.612	0.98673	39.385	38.908	39.894	-0.22692					51	25	3	0	0	0	0.024436	1	3403	3403		6.3127	0	1	291560			79038	5085	55234	55326	87059	87059					0.017177921435177268
TKVFTASSA	9	Unmodified	_TKVFTASSA_					0	0	0		UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant;UBAP2|p.G525Qfs*7|1|0.16|ENSG00000137073|chr9:33943559-33943562|AACC/-|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant	UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.245275	910.475997	-0.47684	-0.00021756	1.3518	0.00061677	0.875	0.00039921	456.24557656038127	39.423	0.78125	39.259	38.795	39.576	-0.16459	-0.10007	-0.00016393	NaN	10.265	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169380			79039	5085	55234	55326							0.017177921435177268
TKVFTASSA	9	Unmodified	_TKVFTASSA_					0	0	0		UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant;UBAP2|p.G525Qfs*7|1|0.16|ENSG00000137073|chr9:33943559-33943562|AACC/-|frameshift_variant;ENSG00000137073|ENST00000379238|UBAP2	UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant	UBAP2|p.S268Y|1|0.26|ENSG00000137073|chr9:33956142-33956142|G/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.245275	910.475997	-0.45927	-0.00020954	1.7147	0.00078232	1.2554	0.00057278	456.24605192762516	39.656	0.77495	39.432	38.961	39.736	-0.22311	0.073531	0.00016717	NaN	10.265	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161550			79040	5085	55234	55326							0.017177921435177268
TKVGLEHLRVN	11	Unmodified	_TKVGLEHLRVN_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.5821228027344	3	422.582333	1264.72517	0.40285	0.00017024	-1.352	-0.00057132	-0.94912	-0.00040108	422.5816975285083	95.745	3.4477	95.748	94.651	98.099	0.0033798					189	79	4	0	0	0	1.0465	1	12180	12180		23.514	4.9833	1	683320			79041	7065	55235	55327	87060	87060					0.1033955510006308
TKVGLEHLRVN	11	Unmodified	_TKVGLEHLRVN_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.58203125	3	422.582333	1264.72517	0.90621	0.00038295	-1.6914	-0.00071474	-0.78516	-0.00033179	422.58153013425874	95.949	3.134	95.826	94.641	97.774	-0.12305					212	71	4	0	0	0	1.0592	1	11875	11875		20.315	0	1	631120			79042	7065	55235	55327	87061	87061					0.1033955510006308
TKVKEELR	8	Unmodified	_TKVKEELR_					0	0	0			REV__ENSG00000177606|ENST00000371222|JUN	REV__ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.801025390625	2	501.800749	1001.58694	0.11178	5.6092E-05	-1.1402	-0.00057213	-1.0284	-0.00051604	501.8002032003808	46.464	1.501	46.464	46.09	47.591	0					138	41	5	0	0	0	0.77775	1	4646	4646		60.972	7.6205	1	40403000	+		79043	23120	55236	55328	87062	87062					0.08621431851611305
TKVKKKAM	8	Unmodified	_TKVKKKAM_					0	0	0			REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.3002014160156	2	467.29933	932.584108	-0.17023	-7.9548E-05	2.8018	0.0013093	2.6316	0.0012297	467.3005379277505	92.262	1.0623	92.253	91.795	92.858	-0.0082932					73	25	4	0	0	0	1.0574	1	11683	11683		12.959	0.75233	1	2527500	+		79044	25469	55237	55329	87063	87063					0.11511885193101534
TKVKKSPKV	9	Unmodified	_TKVKKSPKV_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8367919921875	2	507.837134	1013.65972	1.2098	0.00061437	-1.3261	-0.00067343	-0.11631	-5.9066E-05	507.83635996070103	17.637	0.3994	17.483	17.308	17.708	-0.15403					24	7	4	0	0	0	0.51687	1	202	202		58.23	1.5089	1	519650			79045	8660	55238	55330	87064	87064					0.15343185645042468
TKVKKSPKV	9	Unmodified	_TKVKKSPKV_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	507.837134	1013.65972	3.2708	0.001661	-3.2579	-0.0016545	0.012885	6.5433E-06	507.83530199922353	17.163	0.22272	17.163	17.028	17.25	0	-0.08889	-0.0017925	NaN	58.23	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48372			79046	8660	55238	55330							0.15343185645042468
TKVKKSPKV	9	Unmodified	_TKVKKSPKV_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	507.837134	1013.65972	0.36239	0.00018404	-0.60266	-0.00030605	-0.24027	-0.00012202	507.83687292930745	17.252	0.29872	17.109	16.977	17.276	-0.14278	-0.14217	0.00090437	NaN	58.23	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35703			79047	8660	55238	55330							0.15343185645042468
TKVKPMNSL	9	Unmodified	_TKVKPMNSL_					0	0	0			REV__ENSG00000164308|ENST00000437043|ERAP2	REV__ENSG00000164308|ENST00000437043|ERAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8103942871094	2	509.291702	1016.56885	-1.0424	-0.00053091	-2.2187	-0.00113	-3.2612	-0.0016609	509.29032546578304	48.781	0.86943	48.848	48.588	49.458	0.066795					46	22	3	0	0	0	0.024477	1	4962	4962		20.947	0	1	1589500	+		79048	25735	55239	55331	87065	87065					0.06122973605260995
TKVLCLTTL	9	Unmodified	_TKVLCLTTL_					0	0	0			REV__ENST00000547813.5_1_12:49491457-49494926:-|nuORF	REV__ENST00000547813.5_1_12:49491457-49494926:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2976379394531	2	496.296453	990.578353	0.52941	0.00026274	-4.0893	-0.0020295	-3.5599	-0.0017668	496.2943270059614	54.083	0.35383	54.181	53.94	54.294	0.098015					22	9	4	0	0	0	0.024511	1	5834	5834		25.574	9.9322	1	637340	+		79049	23953	55240	55332	87066	87066					0.0826874189077671
TKVLKDVY	8	Unmodified	_TKVLKDVY_					0	0	0		RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant;RPF2|p.S161Vfs*20|1|0.22|ENSG00000197498|chr6:111008121-111008121|A/-|frameshift_variant;ENSG00000197498|ENST00000441448|RPF2	RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant	RPF2|p.E154Rfs*3|1|0.08|ENSG00000197498|chr6:111008103-111008104|AG/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.2741394042969	2	483.286943	964.559333	-1.2766	-0.00061695	3.4477	0.0016662	2.1712	0.0010493	483.28875962492435	30.071	0.20903	30.145	30.003	30.212	0.074314					9	4	3	0	0	0	0.027866	1	1830	1830		17.365	0	1	46358			79050	10009	55241	55333	87067	87067					0.07563528591367685
TKVLWAPSP	9	Unmodified	_TKVLWAPSP_					0	0	0		ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7158508300781	2	499.78711	997.559667	0.34941	0.00017463	3.5702	0.0017843	3.9196	0.001959	499.7884263196965	71.118	0.55819	70.906	70.741	71.299	-0.21185					28	12	3	0	0	0	0.024319	1	8292	8292		24.519	1.4767	1	498550			79051	15942	55242	55334	87068	87068					0.06078948311210297
TKVNCLVQ	8	Unmodified	_TKVNCLVQ_					0	0	0			REV__ENSG00000174586|ENST00000311044|ZNF497	REV__ENSG00000174586|ENST00000311044|ZNF497	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.7688293457031	2	452.74967	903.484787	-0.7702	-0.00034871	-1.6984	-0.00076895	-2.4686	-0.0011177	452.7482239184332	27.676	0.41982	27.508	27.23	27.649	-0.16816					14	9	2	0	0	0	0.027866	1	1509	1509		60.972	0	1	41534	+		79052	26879	55243	55335	87069	87069					0.029184425083371934
TKVPKPVLV	9	Unmodified	_TKVPKPVLV_					0	0	0		ENST00000527996.5_1_1:109656894-109745573:+|nuORF;ENST00000490758.6_1_1:109656894-109730836:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.8301696777344	2	490.828778	979.643003	-0.37847	-0.00018577	1.1778	0.00057812	0.79937	0.00039235	490.8292719695603	66.765	0.59781	66.484	66.281	66.879	-0.28148					32	19	2	0	0	0	0.85329	1	7918	7918		35.618	6.4687	1	1791200			79053	16173	55244	55336	87070	87070					0.1523668475907698
TKVPKPVLV	9	Unmodified	_TKVPKPVLV_					0	0	0		ENST00000527996.5_1_1:109656894-109745573:+|nuORF;ENST00000490758.6_1_1:109656894-109730836:+|nuORF;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.828778	979.643003	-0.4382	-0.00021508	0.9054	0.0004444	0.46721	0.00022932	490.82926914148385	66.574	0.21753	66.35	66.221	66.439	-0.22374	-0.086575	-0.00033029	NaN	35.618	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94107			79054	16173	55244	55336							0.1523668475907698
TKVQDIPL	8	Unmodified	_TKVQDIPL_					0	0	0			REV__ENSG00000187678|ENST00000434127|SPRY4	REV__ENSG00000187678|ENST00000434127|SPRY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.26055908203125	2	457.271293	912.528032	-0.11209	-5.1254E-05	-0.81108	-0.00037088	-0.92316	-0.00042214	457.27081774740424	78.125	0.4527	78.141	77.863	78.315	0.015907					27	10	4	0	0	0	0.027866	1	9548	9548		17.365	0	1	682280	+		79055	27957	55245	55337	87071	87071					0.06826955557278325
TKVRPTLIA	9	Unmodified	_TKVRPTLIA_					0	0	0			REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2	REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.7672119140625	2	499.821484	997.628415	0.32364	0.00016176	-1.1309	-0.00056525	-0.80726	-0.00040349	499.820561463413	40.376	0.45695	40.376	40.024	40.481	0					19	12	2	0	0	0	0.024506	1	3563	3563		10.866	0	1	172310	+		79056	28965	55246	55338	87072	87072					0.1295061261093906
TKVRRVLP	8	Unmodified	_TKVRRVLP_					0	0	0			REV__ENST00000488227.1_1_20:32663701-32663851:+|nuORF	REV__ENST00000488227.1_1_20:32663701-32663851:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7672119140625	2	484.821818	967.629084	-0.90259	-0.0004376	-3.9697	-0.0019246	-4.8723	-0.0023622	484.8220742881934	34.973	0.18539	34.952	34.828	35.013	-0.021767					5	4	2	0	0	0	0.027866	1	2648	2648		38.806	0	1	24749	+		79057	22867	55247	55339	87073	87073					0.14397452050650372
TKVSIKKAGSD	11	Unmodified	_TKVSIKKAGSD_					0	0	0			REV__ENSG00000128849|ENST00000281282|CGNL1	REV__ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3292846679688	2	567.32987	1132.64519	-0.4315	-0.0002448	-0.024713	-1.4021E-05	-0.45621	-0.00025882	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	1.0075	1	11681	11681		35.152	4.8343	1	13648000	+		79058	23012	55248	55340	87074	87074					0.08417068706239661
TKVSSYPVALI	11	Unmodified	_TKVSSYPVALI_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10;ENST00000452540.1_1_X:154522213-154522408:+|nuORF	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3432006835938	2	589.344989	1176.67542	1.0167	0.00059916	-4.2447	-0.0025016	-3.228	-0.0019024	589.3423343828981	95.387	0.97767	95.391	95.14	96.117	0.0041199					55	22	4	0	0	0	1.0075	1	12068	12068		35.152	3.6222	1	622320			79059	4379	55249	55341	87075	87075					0.09415427371436635
TKVTFSPK	8	Unmodified	_TKVTFSPK_					0	0	0			REV__ENSG00000186806|ENST00000335624|VSIG10L	REV__ENSG00000186806|ENST00000335624|VSIG10L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.2686462402344	2	454.26601	906.517468	-0.10875	-4.94E-05	-0.50675	-0.0002302	-0.61549	-0.0002796	454.2654266308583	25.631	0.41798	25.46	25.118	25.536	-0.17151					10	9	2	0	0	0	0.027866	1	1203	1203		21.96	3.6355	1	51459	+		79060	27884	55250	55342	87076	87076					0.06046972902845482
TKVVAVRR	8	Unmodified	_TKVVAVRR_					0	0	0		ENST00000262919.9_1_20:3628656-3628917:+|nuORF	ENST00000262919.9_1_20:3628656-3628917:+|nuORF	ENST00000262919.9_1_20:3628656-3628917:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2534484863281	2	464.806168	927.597784	-0.20032	-9.3111E-05	3.4492	0.0016032	3.2489	0.0015101	464.8075942600765	78.275	0.55647	78.02	77.784	78.34	-0.25471					22	12	3	0	0	0	0.027866	1	9355	9355		32.812	10.853	1	366370			79061	11514	55251	55343	87077	87077					0.1310887901655633
TKVVKGLTK	9	Unmodified	_TKVVKGLTK_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.3003234863281	2	487.32386	972.633166	-0.61447	-0.00029945	0.7284	0.00035497	0.11392	5.5518E-05	487.32399832921044	58.078	0.10551	58.17	58.118	58.224	0.091217					4	2	2	0	0	0	0.024541	1	6482	6482		15.642	0	1	299400			79062	7225	55252	55344	87078	87078					0.14575496753707284
TKVYGLMYF	9	Oxidation (M)	_TKVYGLM(Oxidation (M))YF_		TKVYGLM(1)YF		TKVYGLM(120)YF	0	0	1		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2843627929688	2	569.286085	1136.55762	-0.40444	-0.00023024	-3.3407	-0.0019018	-3.7451	-0.0021321	569.2842976893792	81.356	1.3137	81.213	80.9	82.214	-0.14249					127	30	6	0	0	0	0.06122	1	9768	9768		124.59	11.183	1	45490000			79063	6587	55253	55345	87079	87079		273			-0.005198484889206156
TKVYQELQV	9	Unmodified	_TKVYQELQV_					0	0	0		CON__Q8N1N4-2;CON__Q7RTT2	CON__Q8N1N4-2	CON__Q8N1N4-2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.78515625	2	554.305864	1106.59717	-0.85983	-0.00047661	0.70101	0.00038857	-0.15882	-8.8034E-05	554.3061921138727	43.628	0.87193	43.628	43.15	44.022	0					77	23	4	0	0	0	0.024319	1	4042	4042		66.429	15.094	1	3316800		+	79064	563	55254	55346	87080	87080					0.048139947861727705
TKWDIVCLK	9	Unmodified	_TKWDIVCLK_					0	0	0			REV__ENSG00000125871|ENST00000377710|MGME1	REV__ENSG00000125871|ENST00000377710|MGME1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3267211914062	2	553.307352	1104.60015	-0.16444	-9.0985E-05	-2.6967	-0.0014921	-2.8611	-0.0015831	553.3056919806024	53.797	0.84924	53.552	53.013	53.862	-0.2453					51	24	3	0	0	0	0.024374	1	5695	5695		25.574	0	1	2541000	+		79065	22856	55255	55347	87081	87081					0.052035466393363095
TKWLAKHV	8	Unmodified	_TKWLAKHV_					0	0	0			REV__nc|ENSG00000065328|Q7L590|MCM10	REV__nc|ENSG00000065328|Q7L590|MCM10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.79510498046875	2	491.795269	981.575986	-0.15145	-7.4485E-05	1.313	0.00064572	1.1615	0.00057124	491.7958080246407	47.771	1.5597	47.495	46.483	48.043	-0.27598					128	42	5	0	0	0	1.0574	1	4709	4709		27.882	6.1799	1	5590000	+		79066	20307	55256	55348	87082	87082					0.08446074267988024
TKWTVNQP	8	Unmodified	_TKWTVNQP_					0	0	0			REV__ENST00000601399.3_1_3:14179396-14186982:+|nuORF	REV__ENST00000601399.3_1_3:14179396-14186982:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2569580078125	2	487.258717	972.50288	-0.82867	-0.00040378	-3.3519	-0.0016333	-4.1806	-0.002037	487.2570330123487	25.505	1.3862	25.505	24.697	26.083	0					82	32	3	0	0	0	0.80469	1	1208	1208		58.782	5.4305	1	2225700	+		79067	35856	55257	55349	87083	87083					0.015529007547115725
TKYNLAEFFID	11	Unmodified	_TKYNLAEFFID_					0	0	0			REV__ASIC3|p.E421K|1|0.13|ENSG00000213199|chr7:151051856-151051856|G/A|missense_variant	REV__ASIC3|p.E421K|1|0.13|ENSG00000213199|chr7:151051856-151051856|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.245849609375	3	454.230966	1359.67107	-0.85	-0.0003861	3.9155	0.0017786	3.0655	0.0013925	454.23261160139344	51.528	0.53491	51.251	51.042	51.577	-0.27643					22	13	2	0	0	0	0.024747	1	5327	5327		15.921	0	1	191740	+		79068	19176	55258	55350	87084	87084					0.005619181578595089
TKYRALSK	8	Unmodified	_TKYRALSK_					0	0	0			REV__ENST00000413379.7_1_19:47712517-47712769:+|nuORF	REV__ENST00000413379.7_1_19:47712517-47712769:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.2758483886719	2	483.790184	965.565815	-0.66844	-0.00032338	-1.5337	-0.00074197	-2.2021	-0.0010653	483.79047944968517	34.275	0.19547	34.1	33.972	34.168	-0.17557					5	4	2	0	0	0	0.027866	1	2500	2500		15.642	0	1	24813	+		79069	32022	55259	55351	87085	87085					0.08165466542766353
TKYSVYIY	8	Unmodified	_TKYSVYIY_					0	0	0		ENST00000463230.5_1_2:136362415-136362688:+|nuORF	ENST00000463230.5_1_2:136362415-136362688:+|nuORF	ENST00000463230.5_1_2:136362415-136362688:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.769287109375	2	518.771126	1035.5277	-0.36583	-0.00018978	-3.1585	-0.0016385	-3.5243	-0.0018283	518.7691715238684	65.904	0.82089	65.662	65.167	65.988	-0.24145					53	19	4	0	0	0	0.42327	1	7551	7551		94.006	0.86318	1	6341400			79070	14731	55260	55352	87086	87086					0.01135535837443058
TKYSVYIY	8	Unmodified	_TKYSVYIY_					0	0	0		ENST00000463230.5_1_2:136362415-136362688:+|nuORF	ENST00000463230.5_1_2:136362415-136362688:+|nuORF	ENST00000463230.5_1_2:136362415-136362688:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7694091796875	2	518.771126	1035.5277	-0.67367	-0.00034948	-3.2634	-0.0016929	-3.937	-0.0020424	518.7693249685898	65.865	0.61686	65.651	65.379	65.996	-0.21327					47	14	4	0	0	0	0.33369	1	7526	7526		106.42	13.272	1	6035600			79071	14731	55260	55352	87087	87087					0.01135535837443058
TKYWKLAEKV	10	Unmodified	_TKYWKLAEKV_					0	0	0			REV__ENSG00000123607|ENST00000243344|TTC21B	REV__ENSG00000123607|ENST00000243344|TTC21B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3694458007812	2	633.366256	1264.71796	0.30625	0.00019397	4.1235	0.0026117	4.4298	0.0028057	633.368729280151	95.929	3.3434	95.806	94.855	98.198	-0.12305					266	77	5	0	0	0	1.0545	1	12045	12045		38.754	4.832	1	9528000	+		79072	22711	55261	55353	87088	87088					0.09618822499624002
TLAAAWLTP	9	Unmodified	_TLAAAWLTP_					0	0	0			REV__ENSG00000146674|ENST00000613132|IGFBP3	REV__ENSG00000146674|ENST00000613132|IGFBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7869567871094	2	472.26601	942.517468	-0.1349	-6.371E-05	4.1063	0.0019393	3.9714	0.0018755	472.2678764705153	83.831	0.77957	83.831	83.435	84.215	0					30	17	2	0	0	0	0.024294	1	10461	10461		37.159	2.9866	1	211150	+		79073	24504	55262	55354	87089	87089					0.04390972902831436
TLAACPLKEI	10	Unmodified	_TLAACPLKEI_					0	0	0			REV__ENSG00000146072|ENST00000296861|TNFRSF21	REV__ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.80224609375	2	529.79936	1057.58417	-1.0683	-0.00056597	3.8643	0.0020473	2.796	0.0014813	529.8012149853706	61.739	0.70609	61.739	61.374	62.08	0					46	18	4	0	0	0	0.52143	1	7156	7156		85.862	8.5442	1	3611900	+		79074	24458	55263	55355	87090	87090					0.057678404024500196
TLAACPLKEI	10	Unmodified	_TLAACPLKEI_					0	0	0			REV__ENSG00000146072|ENST00000296861|TNFRSF21	REV__ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.8087768554688	2	529.79936	1057.58417	-0.35015	-0.00018551	2.9638	0.0015702	2.6136	0.0013847	529.8009001243336	62.013	0.70395	61.786	61.415	62.119	-0.22663					35	18	2	0	0	0	0.27169	1	7141	7141		112.11	21.506	1	3444000	+		79075	24458	55263	55355	87091	87091					0.057678404024500196
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.3060607910156	2	493.305667	984.596781	1.1933	0.00058865	-1.2461	-0.00061471	-0.052818	-2.6056E-05	493.3050253464675	85.186	1.8989	85.186	84.834	86.733	0					128	44	5	0	0	0	0.014454	4	10677	10666;10677;10688;10732		185.55	22.004	1	6168900			79076	10458	55264	55356	87092;87093;87094;87095	87093					0.10386619857001733
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3057556152344	2	493.305667	984.596781	-0.39668	-0.00019568	0.34227	0.00016884	-0.054409	-2.684E-05	493.3058071174939	85.113	1.8518	85.055	84.689	86.541	-0.05761					105	43	4	0	0	0	0.013065	6	10630	10618;10630;10643;10655;10667;10686		180.93	23.597	1	5812800			79077	10458	55264	55356	87096;87097;87098;87099;87100;87101	87097					0.10386619857001733
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.30584716796875	2	493.305667	984.596781	-0.62264	-0.00030715	0.5793	0.00028577	-0.043335	-2.1377E-05	493.3059019653035	85.107	1.9773	85.133	84.704	86.681	0.025528					128	46	5	0	0	0	0.016758	5	10572	10572;10582;10595;10606;10634		215.39	24.873	1	6295700			79078	10458	55264	55356	87102;87103;87104;87105;87106	87102					0.10386619857001733
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.30548095703125	2	493.305667	984.596781	0.02503	1.2347E-05	-0.24946	-0.00012306	-0.22443	-0.00011071	493.30556899112474	85.103	2.7118	84.9	84.459	87.171	-0.20326					175	63	5	0	0	0	0.015752	6	10297	10285;10297;10309;10333;10345;10373		158.07	20.114	1	15563000			79079	10458	55264	55356	87107;87108;87109;87110;87111;87112	87108					0.10386619857001733
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.30548095703125	2	493.305667	984.596781	0.85814	0.00042333	-1.2215	-0.00060259	-0.36339	-0.00017926	493.3050650847258	84.996	2.751	84.838	84.405	87.156	-0.15869					187	64	5	0	0	0	0.014034	8	10293	10271;10281;10293;10319;10331;10342;10357;10368		166.68	22.792	1	14064000			79080	10458	55264	55356	87113;87114;87115;87116;87117;87118;87119;87120	87115					0.10386619857001733
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		nc|ENSG00000205978|Q9P2P1-2|NYNRIN;ENSG00000205978|ENST00000382554|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	nc|ENSG00000205978|Q9P2P1-2|NYNRIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.3057861328125	2	493.305667	984.596781	0.57026	0.00028131	-0.91963	-0.00045366	-0.34937	-0.00017235	493.3052105590004	85.026	2.8824	84.889	84.407	87.289	-0.13753					181	67	5	0	0	0	0.013887	9	10285	10261;10273;10285;10297;10310;10323;10333;10346;10359		180.93	23.597	1	13210000			79081	10458	55264	55356	87121;87122;87123;87124;87125;87126;87127;87128;87129	87123					0.10386619857001733
TLADLLALR	9	Unmodified	_TLADLLALR_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30572509765625	2	493.305667	984.596781	1.1933	0.00058865	-1.2461	-0.00061471	-0.052818	-2.6056E-05	493.3050253464675	85.186	1.8989	85.186	84.834	86.733	0					128	44	5	0	0	0	0.020687	2	10713	10700;10713		148.99	3.9163	1	6168900			79082	651	55265	55357	87130;87131	87131					0.10386619856990364
TLADLLALR	9	Unmodified	_TLADLLALR_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.3054504394531	2	493.305667	984.596781	-0.62264	-0.00030715	0.5793	0.00028577	-0.043335	-2.1377E-05	493.3059019653035	85.107	1.9773	85.133	84.704	86.681	0.025528					128	46	5	0	0	0	0.027092	1	10622	10622		143.89	3.9163	1	6295700			79083	651	55265	55357	87132	87132					0.10386619856990364
TLADLLALR	9	Unmodified	_TLADLLALR_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.3060302734375	2	493.305667	984.596781	0.02503	1.2347E-05	-0.24946	-0.00012306	-0.22443	-0.00011071	493.30556899112474	85.103	2.7118	84.9	84.459	87.171	-0.20326					175	63	5	0	0	0	0.013293	3	10321	10273;10321;10359		176.09	4.555	1	15563000			79084	651	55265	55357	87133;87134;87135	87134					0.10386619856990364
TLADLLALR	9	Unmodified	_TLADLLALR_					0	0	0		DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant;ENSG00000105877|ENST00000409508|DNAH11	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	DNAH11|p.T4414Qfs*72|1|0.32|ENSG00000105877|chr7:21900051-21900051|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3056640625	2	493.305667	984.596781	0.85814	0.00042333	-1.2215	-0.00060259	-0.36339	-0.00017926	493.3050650847258	84.996	2.751	84.838	84.405	87.156	-0.15869					187	64	5	0	0	0	0.015752	1	10305	10305		158.07	0	1	14064000			79085	651	55265	55357	87136	87136					0.10386619856990364
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7796936035156	2	502.779816	1003.54508	-0.15544	-7.8151E-05	-0.24343	-0.00012239	-0.39887	-0.00020054	502.77969999166334	53.32	1.7498	53.32	52.711	54.461	0					118	48	4	0	0	0	0.016838	6	5774	5741;5750;5762;5774;5786;5799		152.63	70.328	1	19212000			79086	9860	55266	55358	87137;87138;87139;87140;87141;87142	87140					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7794494628906	2	502.779816	1003.54508	-0.88185	-0.00044338	0.45392	0.00022822	-0.42793	-0.00021516	502.78004209415644	53.428	1.7999	53.281	52.645	54.445	-0.14723					112	49	5	0	0	0	0.015769	5	5743	5732;5743;5755;5767;5781		157.99	89.202	1	20056000			79087	9860	55266	55358	87143;87144;87145;87146;87147	87144					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.77923583984375	2	502.779816	1003.54508	-0.33812	-0.00017	-0.053875	-2.7087E-05	-0.392	-0.00019709	502.77978265294263	53.218	1.7788	53.314	52.677	54.456	0.095669					113	49	5	0	0	0	0.016838	6	5656	5645;5656;5668;5680;5694;5708		152.63	72.439	1	17173000			79088	9860	55266	55358	87148;87149;87150;87151;87152;87153	87149					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.7801208496094	2	502.779816	1003.54508	-0.051555	-2.5921E-05	-0.11061	-5.5614E-05	-0.16217	-8.1535E-05	502.77969055747684	53.321	1.1164	53.194	52.672	53.788	-0.12706					76	30	4	0	0	0	0.049585	3	5579	5569;5579;5593		128.86	60.775	1	5036500			79089	9860	55266	55358	87154;87155;87156	87155					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.77972412109375	2	502.779816	1003.54508	-0.091392	-4.595E-05	-0.11013	-5.5371E-05	-0.20152	-0.00010132	502.77966064666174	53.524	0.89817	53.266	52.922	53.82	-0.25838					70	25	4	0	0	0	0.074956	3	5602	5592;5602;5615		119.56	40.106	1	5338900			79090	9860	55266	55358	87157;87158;87159	87158					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.7796936035156	2	502.779816	1003.54508	-0.40416	-0.0002032	0.0065769	3.3067E-06	-0.39758	-0.0001999	502.7797359703213	53.354	1.2581	53.164	52.672	53.93	-0.18982					79	35	4	0	0	0	0.06122	3	5597	5574;5585;5597		124.59	56.11	1	4202300			79091	9860	55266	55358	87160;87161;87162	87162					0.04344876163088429
TLADRWSCM	9	Unmodified	_TLADRWSCM_					0	0	0			REV__ENSG00000103168|ENST00000566732|TAF1C;REV__ENST00000564774.5_1_16:84215181-84218621:-|nuORF	REV__ENSG00000103168|ENST00000566732|TAF1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.746337890625	2	541.741519	1081.46849	-0.47974	-0.0002599	1.2638	0.00068466	0.78407	0.00042476	541.7420621191321	75.796	0.50715	75.538	75.24	75.747	-0.25866					19	12	2	0	0	0	0.024374	1	8955	8955		49.442	0	1	103270	+		79092	21361;35259	55267	55359	87163	87163					-0.06899006720050238
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.7819213867188	2	515.782025	1029.5495	0.28892	0.00014902	0.15613	8.053E-05	0.44505	0.00022955	515.7819552185657	71.362	1.1071	71.362	70.909	72.017	0					76	23	4	0	0	0	0.040175	3	8656	8633;8643;8656		133.47	51.072	1	4423800			79093	4366	55268	55360	87164;87165;87166	87166					0.035903405860153725
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7815551757812	2	515.782025	1029.5495	0.42726	0.00022037	-0.00055558	-2.8656E-07	0.4267	0.00022008	515.7819126822233	71.716	1.2236	71.427	71.113	72.337	-0.28858					92	31	5	0	0	0	0.049585	3	8662	8651;8662;8675		128.86	60.376	1	4783600			79094	4366	55268	55360	87167;87168;87169	87168					0.035903405860153725
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7821044921875	2	515.782025	1029.5495	-0.33352	-0.00017203	0.73405	0.00037861	0.40052	0.00020658	515.7823060931017	71.441	1.5543	71.452	70.896	72.451	0.010735					97	40	4	0	0	0	0.040175	3	8578	8568;8578;8597		133.47	64.984	1	5993700			79095	4366	55268	55360	87170;87171;87172	87171					0.035903405860153725
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.7819213867188	2	515.782025	1029.5495	0.076897	3.9662E-05	-0.27176	-0.00014017	-0.19486	-0.00010051	515.7818612702845	71.687	2.16	71.412	71.056	73.216	-0.2751					136	51	5	0	0	0	0.013018	5	8366	8343;8354;8366;8378;8391		173.85	85.208	1	15162000			79096	4366	55268	55360	87173;87174;87175;87176;87177	87175					0.035903405860153725
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7817993164062	2	515.782025	1029.5495	0.21679	0.00011182	-0.48212	-0.00024867	-0.26533	-0.00013685	515.781745208619	71.604	2.0704	71.342	70.95	73.02	-0.26199					128	49	4	0	0	0	0.013018	5	8363	8351;8363;8375;8387;8400		190.71	78.034	1	14421000			79097	4366	55268	55360	87178;87179;87180;87181;87182	87179					0.035903405860153725
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.7818603515625	2	515.782025	1029.5495	0.52613	0.00027137	-0.88399	-0.00045595	-0.35785	-0.00018457	515.7815400875734	71.527	2.1052	71.321	70.964	73.069	-0.20613					144	50	5	0	0	0	0.013018	5	8331	8321;8331;8343;8355;8374		173.85	93.394	1	14491000			79098	4366	55268	55360	87183;87184;87185;87186;87187	87184					0.035903405860153725
TLAEHIIEA	9	Unmodified	_TLAEHIIEA_					0	0	0		nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7712097167969	2	498.771657	995.528761	0.20361	0.00010155	-0.72752	-0.00036287	-0.52391	-0.00026131	498.7712466649984	51.888	1.284	51.888	51.466	52.75	0					91	34	4	0	0	0	0.039744	4	5512	5512;5524;5535;5548		133.81	45.17	1	10544000			79099	8188	55269	55361	87188;87189;87190;87191	87188					0.030817502063428037
TLAEHIIEA	9	Unmodified	_TLAEHIIEA_					0	0	0		nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.77166748046875	2	498.771657	995.528761	-0.33993	-0.00016955	-0.14456	-7.2104E-05	-0.48449	-0.00024165	498.77152824610414	52.031	1.1276	51.884	51.441	52.569	-0.14735					76	30	4	0	0	0	0.11092	3	5512	5512;5523;5535		108.09	39.301	1	10004000			79100	8188	55269	55361	87192;87193;87194	87192					0.030817502063428037
TLAEHIIEA	9	Unmodified	_TLAEHIIEA_					0	0	0		nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.77166748046875	2	498.771657	995.528761	-0.84109	-0.00041951	0.21954	0.0001095	-0.62155	-0.00031001	498.7717117208209	51.783	1.5674	51.87	51.478	53.045	0.087006					90	41	4	0	0	0	0.022311	3	5426	5426;5437;5448		147.69	44.92	1	9575600			79101	8188	55269	55361	87195;87196;87197	87195					0.030817502063428037
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8239135742188	2	543.823889	1085.63323	-0.87005	-0.00047315	0.47849	0.00026021	-0.39156	-0.00021294	543.8239314816876	66.974	1.2781	66.974	66.63	67.908	0					102	31	6	0	0	0	0.016018	4	7973	7963;7973;7984;7997		166.07	56.593	1	4739800			79102	5939	55270	55362	87198;87199;87200;87201	87199					0.09383451963026346
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.8236083984375	2	543.823889	1085.63323	-0.86919	-0.00047269	0.3451	0.00018767	-0.52409	-0.00028501	543.8238383525669	67.399	1.2716	67.111	66.707	67.978	-0.28834					91	31	5	0	0	0	0.047364	4	7982	7982;7993;8004;8015		148.69	30.879	1	4744100			79103	5939	55270	55362	87202;87203;87204;87205	87202					0.09383451963026346
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.8241577148438	2	543.823889	1085.63323	-0.79075	-0.00043003	0.3755	0.00020421	-0.41525	-0.00022582	543.8238942240433	67.084	1.2401	67.108	66.769	68.009	0.023911					100	30	5	0	0	0	0.022744	4	7916	7891;7902;7916;7928		160.82	34.404	1	4950300			79104	5939	55270	55362	87206;87207;87208;87209	87208					0.09383451963026346
TLAEINEYL	9	Unmodified	_TLAEINEYL_					0	0	0		ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.271728515625	2	533.276772	1064.53899	-0.31004	-0.00016534	0.98064	0.00052295	0.6706	0.00035762	533.2770748048324	78.428	1.1511	78.173	77.869	79.02	-0.25471					65	26	4	0	0	0	0.077175	3	9339	9339;9352;9365		118.74	27.966	1	1590900			79105	7271	55271	55363	87210;87211;87212	87210					0.009303131409069465
TLAEINEYL	9	Unmodified	_TLAEINEYL_					0	0	0		ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2737426757812	2	533.276772	1064.53899	-0.095498	-5.0927E-05	0.84417	0.00045018	0.74867	0.00039925	533.2769362137191	78.344	1.2327	78.113	77.75	78.982	-0.23141					75	28	4	0	0	0	0.013065	4	9354	9342;9354;9365;9377		171.53	54.628	1	2023500			79106	7271	55271	55363	87213;87214;87215;87216	87214					0.009303131409069465
TLAEINEYL	9	Unmodified	_TLAEINEYL_					0	0	0		ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	ENSG00000164379|ENST00000296839|FOXQ1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2750244140625	2	533.276772	1064.53899	-0.27725	-0.00014785	0.96324	0.00051368	0.68599	0.00036582	533.277016717732	78.281	1.3203	78.125	77.741	79.062	-0.15591					69	30	4	0	0	0	0.094442	3	9333	9320;9333;9346		112.41	24.657	1	1954500			79107	7271	55271	55363	87217;87218;87219	87218					0.009303131409069465
TLAEKMHSP	9	Unmodified	_TLAEKMHSP_					0	0	0		ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENST00000512792.2_1_12:112191278-112193633:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8113708496094	2	507.257859	1012.50117	-0.71196	-0.00036115	-2.6436	-0.001341	-3.3555	-0.0017021	507.25643651563246	54.538	1.4313	54.538	54.214	55.645	0					91	40	3	0	0	0	0.023817	1	5984	5984		71.296	21.854	1	3062400			79108	15861	55272	55364	87220	87220					-0.004584763255479629
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.82012939453125	2	492.820618	983.626684	1.315	0.00064805	-0.74628	-0.00036778	0.5687	0.00028027	492.820503175854	107.46	0.18842	107.46	107.31	107.49	0					7	4	2	0	0	0	0.20304	1	13806	13806		88.643	3.2834	1	462040			79109	1820	55273	55365	87221	87221					0.13421558802315303
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	492.820618	983.626684	-0.074768	-3.6847E-05	1.5519	0.00076483	1.4772	0.00072798	492.82130790623023	107.49	0.15398	107.49	107.34	107.5	0.0033951	0.086939	0.00086619	NaN	88.643	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433650			79110	1820	55273	55365							0.13421558802315303
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.820618	983.626684	-1.1702	-0.00057671	0.86125	0.00042444	-0.30897	-0.00015227	492.82082956416104	107.48	0.083443	107.34	107.29	107.37	-0.1346	-0.063224	0.00018542	NaN	88.643	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753320			79111	1820	55273	55365							0.13421558802315303
TLAELLVLL	9	Unmodified	_TLAELLVLL_					0	0	0		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.820618	983.626684	0.6783	0.00033428	-0.95516	-0.00047072	-0.27686	-0.00013644	492.8198651367386	107.49	0.080292	107.33	107.26	107.34	-0.15771	-0.077667	-0.0016049	NaN	88.643	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245070			79112	1820	55273	55365							0.13421558802315303
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.28143310546875	2	487.281857	972.549162	-0.56477	-0.0002752	1.0265	0.00050019	0.46172	0.00022499	487.2821490714274	80.74	1.5485	80.74	80.163	81.711	0					110	37	4	0	0	0	0.013293	7	10046	10046;10058;10070;10085;10097;10108;10120		176.09	59.479	1	12549000			79113	5355	55274	55366	87222;87223;87224;87225;87226;87227;87228	87222					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.28192138671875	2	487.281857	972.549162	-0.93325	-0.00045475	1.3793	0.00067213	0.44609	0.00021737	487.28228653587087	80.935	1.4221	80.783	80.301	81.723	-0.15168					127	34	5	0	0	0	0.013094	6	10061	10023;10047;10061;10074;10085;10098		180.93	61.265	1	12616000			79114	5355	55274	55366	87229;87230;87231;87232;87233;87234	87231					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.28204345703125	2	487.281857	972.549162	-1.2938	-0.00063044	1.7194	0.00083782	0.4256	0.00020739	487.28245379141674	80.716	1.5033	80.74	80.234	81.737	0.023911					122	36	5	0	0	0	0.013293	6	9977	9977;9989;10002;10016;10028;10039		176.09	71.34	1	11847000			79115	5355	55274	55366	87235;87236;87237;87238;87239;87240	87235					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2819519042969	2	487.281857	972.549162	-0.038482	-1.8752E-05	1.3423	0.00065407	1.3038	0.00063532	487.28181816635555	80.808	2.6815	80.57	80.082	82.764	-0.23784					108	63	3	0	0	0	0.013094	4	9699	9699;9711;9724;9760		190.52	61.29	1	6614800			79116	5355	55274	55366	87241;87242;87243;87244	87241					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.28173828125	2	487.281857	972.549162	0.33302	0.00016228	0.6418	0.00031274	0.97482	0.00047501	487.28154074538116	80.817	1.9101	80.611	80.092	82.002	-0.20633					105	45	4	0	0	0	0.015064	1	9711	9711		190.52	28.265	1	6440700			79117	5355	55274	55366	87245	87245					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2815856933594	2	487.281857	972.549162	0.1072	5.2239E-05	0.91592	0.00044631	1.0231	0.00049855	487.28164653610247	80.699	2.1626	80.553	79.616	81.779	-0.146					115	51	5	0	0	0	0.014918	1	9704	9704		162.25	66.062	1	5867400			79118	5355	55274	55366	87246	87246					0.06178920866148019
TLAFSGRLTGF	11	Unmodified	_TLAFSGRLTGF_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.7784423828125	2	585.319306	1168.62406	-0.35401	-0.00020721	0.035245	2.063E-05	-0.31877	-0.00018658	585.3193077832416	42.428	0.60643	42.305	42.037	42.643	-0.12299					33	15	3	0	0	0	0.023337	1	3870	3870		90.37	19.074	1	443720			79119	7128	55275	55367	87247	87247					0.04649103397377985
TLAFSGRLTGF	11	Unmodified	_TLAFSGRLTGF_					0	0	0		ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	ENSG00000163661|ENST00000295927|PTX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.7784423828125	2	585.319306	1168.62406	-1.1417	-0.00066823	0.85087	0.00049803	-0.29079	-0.0001702	585.3195739701976	42.599	0.48814	42.367	42.117	42.605	-0.23186					22	12	2	0	0	0	0.019736	1	3869	3869		122.18	39.935	1	542280			79120	7128	55275	55367	87248	87248					0.04649103397377985
TLAFSLLAH	9	Unmodified	_TLAFSLLAH_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.77764892578125	2	486.779285	971.544017	-0.79426	-0.00038663	1.0466	0.00050947	0.25235	0.00012284	486.7792510953601	52.175	0.3429	52.056	51.939	52.282	-0.11875					15	8	2	0	0	0	0.024466	1	5430	5430		18.324	0	1	100540			79121	10594	55276	55368	87249	87249					0.0571066179418267
TLAGNIIIVT	10	Unmodified	_TLAGNIIIVT_					0	0	0		ENSG00000196184|ENST00000423932|OR10J1;nc|ENSG00000196184|P30954|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8267517089844	2	507.813325	1013.6121	0.029513	1.4987E-05	0.17261	8.7654E-05	0.20212	0.00010264	507.8131935947007	67.995	0.39364	67.706	67.429	67.823	-0.28835					16	9	2	0	0	0	0.03519	1	8084	8084		82.75	17.285	1	357900			79122	9831	55277	55369	87250	87250					0.10583486654206808
TLAGQNRPVP	10	Unmodified	_TLAGQNRPVP_					0	0	0			REV__ENST00000595242.3_2_19:50148377-50149460:+|nuORF	REV__ENST00000595242.3_2_19:50148377-50149460:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2814331054688	2	526.795998	1051.57744	-0.20697	-0.00010903	4.1829	0.0022035	3.976	0.0020945	526.7980810794184	63.439	0.55265	63.211	62.851	63.404	-0.22773					23	13	3	0	0	0	0.03519	1	7132	7132		45.972	0	1	197320	+		79123	35782	55278	55370	87251	87251					0.05371663566097595
TLAGWGPGVK	10	Unmodified	_TLAGWGPGVK_					0	0	0		ENST00000263071.8_1_17:1543248-1547228:-|nuORF	ENST00000263071.8_1_17:1543248-1547228:-|nuORF	ENST00000263071.8_1_17:1543248-1547228:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2971496582031	2	493.276909	984.539266	0.14223	7.0158E-05	-4.4759	-0.0022079	-4.3337	-0.0021377	493.27457770102455	47.594	0.99874	47.407	47.123	48.121	-0.18684					53	26	3	0	0	0	0.03519	1	4650	4650		18.262	0	1	3766900			79124	11519	55279	55371	87252	87252					0.04637777651430497
TLAIVTKIVV	10	Unmodified	_TLAIVTKIVV_					0	0	0			REV__ENSG00000175764|ENST00000321582|TTLL11	REV__ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.296875	2	528.854993	1055.69543	-0.73522	-0.00038882	-1.4451	-0.00076422	-2.1803	-0.001153	528.854314030398	56.075	0.315	56.075	55.892	56.207	0					13	8	2	0	0	0	0.03519	1	6233	6233		52.937	20.982	1	166960	+		79125	26970	55280	55372	87253	87253					0.16981223102038712
TLAIVTKIVV	10	Unmodified	_TLAIVTKIVV_					0	0	0			REV__ENSG00000175764|ENST00000321582|TTLL11	REV__ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.297119140625	2	528.854993	1055.69543	-0.64449	-0.00034084	-0.46688	-0.00024691	-1.1114	-0.00058776	528.8545477359844	56.23	0.3601	56.074	55.887	56.247	-0.15602					13	9	2	0	0	0	0.03519	1	6239	6239		52.937	33.833	1	152720	+		79126	26970	55280	55372	87254	87254					0.16981223102038712
TLAIVTKIVV	10	Unmodified	_TLAIVTKIVV_					0	0	0			REV__ENSG00000175764|ENST00000321582|TTLL11	REV__ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	528.854993	1055.69543	-0.75822	-0.00040099	-0.55056	-0.00029117	-1.3088	-0.00069215	528.8548648465572	56.006	0.35227	56.103	55.856	56.209	0.097893					14	9	2	0	0	0	0.03519	1	6138	6138		52.937	38.072	1	79843	+		79127	26970	55280	55372	87255	87255					0.16981223102038712
TLAIVTKIVV	10	Unmodified	_TLAIVTKIVV_					0	0	0			REV__ENSG00000175764|ENST00000321582|TTLL11	REV__ENSG00000175764|ENST00000321582|TTLL11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.854993	1055.69543	-0.23198	-0.00012268	-0.9913	-0.00052425	-1.2233	-0.00064693	528.8539959007668	56.096	0.22601	55.88	55.772	55.998	-0.21607	-0.15282	-0.00025335	NaN	52.937	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63278	+		79128	26970	55280	55372							0.16981223102038712
TLAKYLMEL	9	Oxidation (M)	_TLAKYLM(Oxidation (M))EL_		TLAKYLM(1)EL		TLAKYLM(100)EL	0	0	1		ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000157456|ENST00000288207|CCNB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.75830078125	2	549.299193	1096.58383	-0.19622	-0.00010778	0.18624	0.0001023	-0.0099819	-5.4831E-06	549.2991548088166	67.869	1.2504	67.888	67.549	68.799	0.018921					75	32	4	0	0	0	0.023291	1	8064	8064		101.25	40.281	1	1642700			79129	6599;4748	55281	55373	87256	87256		190			0.03940420682579315
TLAKYLMEL	9	Oxidation (M)	_TLAKYLM(Oxidation (M))EL_					0	0	1		ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.299193	1096.58383	0.69266	0.00038048	1.3286	0.00072981	2.0213	0.0011103	549.2998984686279	68.061	0.4899	67.806	67.579	68.069	-0.25516	0.005965	0.0012371	NaN	101.25	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128640			79130	6599;4748	55281	55373				190			0.03940420682579315
TLAKYLMEL	9	Oxidation (M)	_TLAKYLM(Oxidation (M))EL_					0	0	1		ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.299193	1096.58383	0.2188	0.00012019	1.0307	0.00056619	1.2495	0.00068637	549.2997495703851	68.01	0.48531	67.776	67.595	68.081	-0.23376	-0.023863	0.00090984	NaN	101.25	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212090			79131	6599;4748	55281	55373				190			0.03940420682579315
TLAKYLMEL	9	Oxidation (M)	_TLAKYLM(Oxidation (M))EL_					0	0	1		ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	ENSG00000157456|ENST00000288207|CCNB2;nc|ENSG00000134057|P14635-2|CCNB1	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.299193	1096.58383	0.075313	4.137E-05	1.8812	0.0010333	1.9565	0.0010747	549.299607379868	68.033	0.47913	67.795	67.629	68.109	-0.23814	-0.0046758	0.0018441	NaN	101.25	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216030			79132	6599;4748	55281	55373				190			0.03940420682579315
TLALGGAWTP	10	Unmodified	_TLALGGAWTP_					0	0	0			REV__ENST00000389341.9_1_19:42594426-42594810:-|nuORF	REV__ENST00000389341.9_1_19:42594426-42594810:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2893981933594	2	493.768917	985.523281	-0.54817	-0.00027067	2.7424	0.0013541	2.1942	0.0010834	493.77007817752883	62.04	0.66361	62.04	61.453	62.117	0					24	17	2	0	0	0	0.03519	1	7141	7141		27.882	3.6795	1	311090	+		79133	31569	55282	55374	87257	87257					0.029940714145027414
TLALRLMKV	9	Unmodified	_TLALRLMKV_					0	0	0			REV__ENST00000526149.1_1_16:66586582-66592272:+|nuORF	REV__ENST00000526149.1_1_16:66586582-66592272:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.2900390625	2	522.833537	1043.65252	-0.85592	-0.0004475	-3.1701	-0.0016574	-4.026	-0.0021049	522.8316978183325	57.019	0.42553	57.019	56.841	57.266	0					18	11	2	0	0	0	0.024344	1	6365	6365		45.972	24.012	1	136210	+		79134	28822	55283	55375	87258	87258					0.1324412977294287
TLALRLMKV	9	Unmodified	_TLALRLMKV_					0	0	0			REV__ENST00000526149.1_1_16:66586582-66592272:+|nuORF	REV__ENST00000526149.1_1_16:66586582-66592272:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2896118164062	2	522.833537	1043.65252	-0.27119	-0.00014179	-3.6045	-0.0018845	-3.8757	-0.0020263	522.8315172304228	56.865	0.42778	56.961	56.815	57.243	0.09531					17	11	2	0	0	0	0.024288	1	6268	6268		29.17	0	1	137200	+		79135	28822	55283	55375	87259	87259					0.1324412977294287
TLAPAVREH	9	Unmodified	_TLAPAVREH_					0	0	0		ENST00000416295.1_1_3:50312110-50312520:+|nuORF	ENST00000416295.1_1_3:50312110-50312520:+|nuORF	ENST00000416295.1_1_3:50312110-50312520:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.30609130859375	2	497.277441	992.540328	0.23109	0.00011492	-0.27085	-0.00013469	-0.039756	-1.977E-05	497.2773282560302	22.063	0.51856	21.874	21.628	22.147	-0.18894					35	10	6	0	0	0	0.024263	1	749	749		42.396	13.247	1	435120			79136	13897	55284	55376	87260	87260					0.04375992020334252
TLAPPLLRV	9	Unmodified	_TLAPPLLRV_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.31878662109375	2	490.318577	978.622602	-0.22183	-0.00010877	0.59681	0.00029263	0.37498	0.00018386	490.3187052627151	67.104	1.279	67.104	66.552	67.831	0					87	31	4	0	0	0	0.26966	3	7991	7981;7991;8004		79.713	28.377	1	5436500			79137	8381	55285	55377	87261;87262;87263	87262					0.13243514099281128
TLAPPLLRV	9	Unmodified	_TLAPPLLRV_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.3182678222656	2	490.318577	978.622602	-0.24057	-0.00011795	0.3557	0.00017441	0.11514	5.6453E-05	490.31862095929563	67.378	1.28	67.089	66.581	67.861	-0.28834					81	31	4	0	0	0	0.26966	4	8010	7998;8010;8024;8035		79.713	19.419	1	6346500			79138	8381	55285	55377	87264;87265;87266;87267	87265					0.13243514099281128
TLAPPLLRV	9	Unmodified	_TLAPPLLRV_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.3189697265625	2	490.318577	978.622602	-0.28787	-0.00014115	0.55869	0.00027394	0.27083	0.00013279	490.31869669604754	67.167	1.207	67.191	66.728	67.935	0.023911					85	29	4	0	0	0	0.34489	4	7939	7903;7914;7926;7939		69.628	20.477	1	5178000			79139	8381	55285	55377	87268;87269;87270;87271	87271					0.13243514099281128
TLAQDQAAR	9	Unmodified	_TLAQDQAAR_					0	0	0		ENST00000547210.5_1_12:54769658-54778506:-|nuORF;ENST00000352268.10_1_12:54769658-54785041:-|nuORF;ENST00000394313.6_1_12:54769658-54778446:-|nuORF;ENST00000546970.5_1_12:54769658-54778785:-|nuORF	ENST00000547210.5_1_12:54769658-54778506:-|nuORF	ENST00000547210.5_1_12:54769658-54778506:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.24993896484375	2	487.256705	972.498858	-1.0412	-0.00050735	-4.0265	-0.0019619	-5.0677	-0.0024693	487.254597369826	33.79	0.50498	33.615	33.391	33.896	-0.17557					20	12	2	0	0	0	0.024477	1	2393	2393		27.882	7.8855	1	250100			79140	12603	55286	55378	87272	87272					0.011508112609817545
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;ENST00000462297.1_1_2:74754523-74754670:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3126831054688	2	522.314023	1042.61349	-0.60426	-0.00031561	1.6359	0.00085443	1.0316	0.00053882	522.314672032984	32.138	0.43285	32.149	31.943	32.376	0.011799					29	10	4	0	0	0	0.33603	1	2193	2193		70.816	6.6089	1	1118000			79141	3432	55287	55379	87273	87273					0.0938912074293512
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;ENST00000462297.1_1_2:74754523-74754670:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.3139038085938	2	522.314023	1042.61349	-0.23038	-0.00012033	0.22206	0.00011599	-0.0083158	-4.3435E-06	522.3140313228869	32.299	0.84069	32.062	31.74	32.581	-0.23667					46	19	4	0	0	0	0.11727	2	2219	2207;2219		106.68	16.082	1	1607300			79142	3432	55287	55379	87274;87275	87275					0.0938912074293512
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;ENST00000462297.1_1_2:74754523-74754670:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.3140258789062	2	522.314023	1042.61349	0.54438	0.00028434	-0.57938	-0.00030262	-0.035004	-1.8283E-05	522.3135788928837	32.361	1.1307	32.168	31.814	32.944	-0.19261					55	26	4	0	0	0	0.023452	3	2217	2207;2217;2229		146.79	56.185	1	1345100			79143	3432	55287	55379	87276;87277;87278	87277					0.0938912074293512
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;ENST00000462297.1_1_2:74754523-74754670:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.3140258789062	2	522.314023	1042.61349	-0.21458	-0.00011208	0.046239	2.4152E-05	-0.16834	-8.7927E-05	522.3139530802417	32.258	0.78641	32.101	31.778	32.564	-0.15772					47	18	4	0	0	0	0.048057	2	2183	2183;2195		129.42	36.226	1	1949600			79144	3432	55287	55379	87279;87280	87279					0.0938912074293512
TLARLEQL	8	Unmodified	_TLARLEQL_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.29241943359375	2	472.282192	942.549831	0.78266	0.00036964	-1.0122	-0.00047803	-0.22952	-0.0001084	472.28166759302417	52.496	0.70186	52.349	52.095	52.797	-0.14723					38	17	3	0	0	0	0.027866	1	5663	5663		68.485	7.5128	1	184180	+		79145	23162	55288	55380	87281	87281					0.07625760305836593
TLASIFSI	8	Unmodified	_TLASIFSI_					0	0	0			REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.24603271484375	2	426.247286	850.48002	-0.078627	-3.3515E-05	-2.7834	-0.0011864	-2.862	-0.0012199	426.245984200577	89.563	1.9241	89.435	88.405	90.329	-0.12775					94	45	4	0	0	0	1.0338	1	10949	10949		31.955	5.1588	1	680360	+		79146	35440	55289	55381	87282	87282					0.04879881637236849
TLASPPLLA	9	Unmodified	_TLASPPLLA_					0	0	0			REV__ENST00000497377.5_1_6:31322262-31322491:-|nuORF	REV__ENST00000497377.5_1_6:31322262-31322491:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7681579589844	2	441.768386	881.522219	0.14561	6.4327E-05	-1.2505	-0.00055245	-1.1049	-0.00048812	441.76790990667746	102.78	1.6063	102.79	102.46	104.06	0.0054169					106	40	5	0	0	0	0.78069	1	13108	13108		40.573	0	1	27080000	+		79147	33852	55290	55382	87283	87283					0.07671857045613706
TLAWGDVAID	10	Unmodified	_TLAWGDVAID_					0	0	0			REV__SLC33A1|p.E281Rfs*119|1|0.1|ENSG00000169359|chr3:155842554-155842555|-/T|frameshift_variant	REV__SLC33A1|p.E281Rfs*119|1|0.1|ENSG00000169359|chr3:155842554-155842555|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2904663085938	2	530.769114	1059.52368	-0.22566	-0.00011977	-3.716	-0.0019723	-3.9416	-0.0020921	530.7662119108833	61.843	0.24354	61.585	61.423	61.667	-0.25725					6	5	2	0	0	0	0.03519	1	6911	6911		40.778	5.1599	1	30261	+		79148	26359	55291	55383	87284	87284					-0.0037055365630749293
TLCCKRLL	8	2 Carbamidomethyl (C)	_TLC(Carbamidomethyl (C))C(Carbamidomethyl (C))KRLL_	TLC(1)C(1)KRLL		TLC(58)C(58)KRLL		0	2	0			REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF	REV__ENST00000448258.6_1_10:120867502-120877057:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.2942504882812	2	532.291179	1062.56781	0.21527	0.00011458	2.5239	0.0013435	2.7392	0.001458	532.2924725682137	77.909	0.82346	77.698	77.333	78.157	-0.21087					32	19	2	0	0	0	0.81662	1	9607	9607		57.811	6.4758	1	2653200	+		79149	22506	55292	55384	87285	87285	294;295				0.03902435964710094
TLCFVMFW	8	Unmodified	_TLCFVMFW_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;nc|ENSG00000154122|Q9HCJ1-2|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7572021484375	2	523.745542	1045.47653	-0.904	-0.00047347	-3.5511	-0.0018599	-4.4551	-0.0023333	523.7436158539851	52.266	0.65546	52.147	51.904	52.56	-0.11875					36	16	3	0	0	0	0.027866	1	5390	5390		26.796	0	1	717180			79150	6383	55293	55385	87286	87286					-0.04438827732633399
TLCIAKRVL	9	Unmodified	_TLCIAKRVL_					0	0	0		ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2770080566406	2	508.817887	1015.62122	-0.13879	-7.062E-05	-1.9531	-0.00099376	-2.0919	-0.0010644	508.8163797939146	70.779	0.66643	70.79	70.384	71.05	0.010735					23	15	2	0	0	0	0.024405	1	8494	8494		53.351	21.397	1	438040			79151	10467	55294	55386	87287	87287					0.11403556738866882
TLCIAKRVL	9	Unmodified	_TLCIAKRVL_					0	0	0		ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.817887	1015.62122	0.85493	0.00043501	-3.139	-0.0015972	-2.2841	-0.0011622	508.81597734137557	71.039	0.58788	70.746	70.368	70.956	-0.29291	0.01279	-0.00052509	NaN	63.306	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328600			79152	10467	55294	55386							0.11403556738866882
TLCIDFEYG	9	Unmodified	_TLCIDFEYG_					0	0	0			REV__ENSG00000226784|ENST00000458128|PGAM4	REV__ENSG00000226784|ENST00000458128|PGAM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2904663085938	2	530.736425	1059.4583	-0.12514	-6.6418E-05	3.8997	0.0020697	3.7745	0.0020033	530.7382213030769	61.982	0.55245	61.725	61.505	62.058	-0.25725					16	13	2	0	0	0	0.024506	1	6911	6911		30.504	7.4612	1	111220	+		79153	28878	55295	55387	87288	87288					-0.06905291173643491
TLCKECSDC	9	Unmodified	_TLCKECSDC_					0	0	0			REV__nc|ENSG00000164631|P17014-2|ZNF12	REV__nc|ENSG00000164631|P17014-2|ZNF12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.27227783203125	2	501.190471	1000.36639	-0.3708	-0.00018584	0.33344	0.00016712	-0.037367	-1.8728E-05	501.1906994053425	39.785	0.39257	39.562	39.422	39.815	-0.22311					16	9	3	0	0	0	0.024535	1	3367	3367		18.324	0	1	103100	+		79154	25783	55296	55388	87289	87289					-0.1337804085399057
TLCMRHQGT	9	Unmodified	_TLCMRHQGT_					0	0	0		ENST00000521062.5_1_6:112101798-112141100:-|nuORF	ENST00000521062.5_1_6:112101798-112141100:-|nuORF	ENST00000521062.5_1_6:112101798-112141100:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.747136	1045.47972	0.5754	0.00030136	-4.234	-0.0022175	-3.6586	-0.0019162	523.7446611538758	85.21	0.45789	85.073	84.868	85.326	-0.13753					20	10	2	0	0	0	0.024466	1	10304	10304		18.262	4.125	1	83022			79155	15997	55297	55389	87290	87290					-0.041201846259127706
TLCQDARSN	9	Unmodified	_TLCQDARSN_					0	0	0		nc|ENSG00000204644|Q9NU63|ZFP57;nc|ENSG00000204644|Q9NU63-2|ZFP57;ENSG00000204644|ENST00000376883|ZFP57;ZFP57|p.H374Y|1|0.33|ENSG00000204644|chr6:29672739-29672739|G/A|missense_variant	nc|ENSG00000204644|Q9NU63|ZFP57	nc|ENSG00000204644|Q9NU63|ZFP57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.76068115234375	2	504.232373	1006.45019	-0.72871	-0.00036744	1.5759	0.0007946	0.84716	0.00042717	504.23320622044866	65.464	0.77972	65.213	64.864	65.644	-0.25111					39	18	3	0	0	0	0.024257	1	7434	7434		20.837	0	1	551940			79156	10365	55298	55390	87291	87291					-0.052774253704114926
TLCRNITEL	9	Unmodified	_TLCRNITEL_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3062744140625	2	531.784241	1061.55393	-0.027305	-1.452E-05	1.1963	0.00063617	1.169	0.00062165	531.7849293147018	59.388	0.80713	59.474	58.884	59.692	0.085682					30	21	2	0	0	0	0.023007	1	6617	6617		47.657	0	1	331710	+		79157	21049	55299	55391	87292	87292					0.025614817372343168
TLCRNITEL	9	Unmodified	_TLCRNITEL_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.784241	1061.55393	0.54676	0.00029076	0.97423	0.00051808	1.521	0.00080884	531.7842390100702	59.505	0.62325	59.505	59.257	59.88	0	0.013665	-0.000261	NaN	47.657	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472500	+		79158	21049	55299	55391							0.025614817372343168
TLCRNITEL	9	Unmodified	_TLCRNITEL_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.784241	1061.55393	0.12837	6.8265E-05	1.4743	0.00078403	1.6027	0.0008523	531.7850016832531	59.695	0.51621	59.495	59.245	59.761	-0.20016	0.0039861	0.00027091	NaN	47.657	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303540	+		79159	21049	55299	55391							0.025614817372343168
TLCRQVRCCQ	10	Unmodified	_TLCRQVRCCQ_					0	0	0			REV__ENST00000432062.1_1_X:129063778-129063838:-|nuORF	REV__ENST00000432062.1_1_X:129063778-129063838:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.28564453125	2	605.286102	1208.55765	-0.053991	-3.268E-05	-0.3926	-0.00023764	-0.44659	-0.00027032	605.2857570567427	57.634	0.75246	57.459	57.072	57.825	-0.1749					48	19	4	0	0	0	1.0616	1	6473	6473		37.812	0.65241	1	2363400	+		79160	32378	55300	55392	87293	87293					-0.038284950321667566
TLCTKLFLI	9	Unmodified	_TLCTKLFLI_					0	0	0		ENST00000561424.5_1_15:45009826-45011035:+|nuORF	ENST00000561424.5_1_15:45009826-45011035:+|nuORF	ENST00000561424.5_1_15:45009826-45011035:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2687377929688	2	526.314646	1050.61474	-0.76483	-0.00040254	2.4885	0.0013097	1.7236	0.00090717	526.3160970436234	77.798	0.77214	77.798	77.51	78.282	0					36	18	3	0	0	0	0.024447	1	9676	9676		25.574	0	1	99798			79161	16825	55301	55393	87294	87294					0.09145618787488274
TLCVAIVHY	9	Unmodified	_TLCVAIVHY_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.28363037109375	2	509.773145	1017.53174	-0.18136	-9.245E-05	2.6155	0.0013333	2.4341	0.0012409	509.7743202706599	69.603	0.8232	69.381	69.185	70.008	-0.22245					38	19	3	0	0	0	0.024262	1	8137	8137		38.806	15.283	1	439230			79162	202	55302	55394	87295	87295					0.023673020594856098
TLCYILLLI	9	Unmodified	_TLCYILLLI_					0	0	0			REV__OR11L1|p.F31L|1|0.27|ENSG00000197591|chr1:247841804-247841804|G/T|missense_variant	REV__OR11L1|p.F31L|1|0.27|ENSG00000197591|chr1:247841804-247841804|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.8080444335938	2	532.824846	1063.63514	0.4209	0.00022426	0.29955	0.00015961	0.72045	0.00038388	532.8250018817936	71.423	1.1417	71.135	70.546	71.688	-0.28858					53	28	3	0	0	0	0.024294	1	8591	8591		45.952	0	1	722900	+		79163	37308	55303	55395	87296	87296					0.10586789447324918
TLCYMIIR	8	Unmodified	_TLCYMIIR_					0	0	0		ENST00000521901.5_1_5:179382656-179390574:-|nuORF;ENSG00000113269|ENST00000521389|RNF130	ENST00000521901.5_1_5:179382656-179390574:-|nuORF	ENST00000521901.5_1_5:179382656-179390574:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8418273925781	2	506.769548	1011.52454	-0.74422	-0.00037715	0.8445	0.00042797	0.10029	5.0822E-05	506.7698710998562	65.254	0.73427	65.254	64.909	65.643	0					32	20	2	0	0	0	0.027866	1	7776	7776		31.955	5.2619	1	911840			79164	3276	55304	55396	87297	87297					0.019242461874227956
TLCYMIIR	8	Unmodified	_TLCYMIIR_					0	0	0		ENST00000521901.5_1_5:179382656-179390574:-|nuORF;ENSG00000113269|ENST00000521389|RNF130	ENST00000521901.5_1_5:179382656-179390574:-|nuORF	ENST00000521901.5_1_5:179382656-179390574:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.769548	1011.52454	-0.64157	-0.00032513	-0.79848	-0.00040464	-1.4401	-0.00072977	506.77014577943896	65.565	0.70238	65.292	64.94	65.642	-0.27282	-0.0022772	-0.0012286	NaN	31.955	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	909820			79165	3276	55304	55396							0.019242461874227956
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.2633056640625	2	542.263862	1082.51317	-0.96057	-0.00052088	0.34197	0.00018544	-0.6186	-0.00033545	542.2644681621683	49.063	0.87764	48.963	48.689	49.567	-0.1008					43	22	3	0	0	0	0.1764	1	4910	4910		93.598	23.97	1	2512100			79166	6029	55305	55397	87298	87298					-0.02478581101377131
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.2636108398438	2	542.263862	1082.51317	-0.34236	-0.00018565	-0.095141	-5.1591E-05	-0.4375	-0.00023724	542.2638232615224	49.36	0.68478	49.08	48.825	49.51	-0.27977					30	17	2	0	0	0	0.28047	1	4945	4945		78.264	32.312	1	2327100			79167	6029	55305	55397	87299	87299					-0.02478581101377131
TLDDESLKY	9	Unmodified	_TLDDESLKY_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.263862	1082.51317	-0.81884	-0.00044402	-0.24357	-0.00013208	-1.0624	-0.0005761	542.2641993037975	49.218	0.79156	49.036	48.702	49.494	-0.18206	0.0099761	-0.00022931	NaN	93.598	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2745200			79168	6029	55305	55397							-0.02478581101377131
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7610168457031	2	465.760758	929.506963	0.2699	0.00012571	-0.30187	-0.0001406	-0.031967	-1.4889E-05	465.7605587627355	86.539	1.5618	86.539	86.128	87.69	0					103	36	4	0	0	0	0.049585	5	10868	10848;10856;10868;10880;10893		128.86	48.922	1	3222000			79169	4532	55306	55398	87300;87301;87302;87303;87304	87302					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_39_ClassI_Rep-2	2	465.7608947753906	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.376	1	86.331	85.831	86.831	-0.045105								0	0	0	0.45465	1	10816	10816		57.811	4.4598	1				79170	4532	55306	55398	87305	87305					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_39_ClassI_Rep-2	2	465.76068115234375	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.456	1	86.41	85.91	86.91	-0.045105								0	0	0	0.17474	1	10827	10827		76.847	5.4687	1				79171	4532	55306	55398	87306	87306					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_39_ClassI_Rep-2	2	465.76068115234375	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.542	1	86.497	85.997	86.997	-0.045105								0	0	0	0.024645	1	10839	10839		123.99	44.05	1				79172	4532	55306	55398	87307	87307					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.7606506347656	2	465.760758	929.506963	0.46327	0.00021578	-0.37927	-0.00017665	0.084001	3.9124E-05	465.76043438731233	86.476	1.9056	86.499	85.778	87.683	0.023666					101	44	4	0	0	0	0.033883	5	10804	10780;10792;10804;10819;10832		138.48	53.564	1	3577700			79173	4532	55306	55398	87308;87309;87310;87311;87312	87310					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7608947753906	2	465.760758	929.506963	0.15209	7.0838E-05	-0.17226	-8.0234E-05	-0.020173	-9.3958E-06	465.7606084022292	86.637	1.8854	86.45	85.991	87.877	-0.18695					107	44	4	0	0	0	0.049708	4	10519	10495;10507;10519;10532		128.82	52.611	1	4526900			79174	4532	55306	55398	87313;87314;87315;87316	87315					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7607116699219	2	465.760758	929.506963	0.65909	0.00030698	-0.7545	-0.00035142	-0.095408	-4.4437E-05	465.7603284371423	86.585	2.299	86.443	85.884	88.183	-0.14217					155	54	4	0	0	0	0.049708	6	10515	10494;10504;10515;10527;10566;10579		128.82	41.061	1	4715700			79175	4532	55306	55398	87317;87318;87319;87320;87321;87322	87319					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	465.7605895996094	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.4	1	86.263	85.763	86.763	-0.13734								0	0	0	0.11709	1	10477	10477		88.643	0.88857	1				79176	4532	55306	55398	87323	87323					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	465.7607421875	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.481	1	86.343	85.843	86.843	-0.13734								0	0	0	0.037273	1	10488	10488		114.59	34.647	1				79177	4532	55306	55398	87324	87324					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	465.7605895996094	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.568	1	86.43	85.93	86.93	-0.13734								0	0	0	0.021408	1	10500	10500		128.82	51.969	1				79178	4532	55306	55398	87325	87325					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	465.7605895996094	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.655	1	86.518	86.018	87.018	-0.13734								0	0	0	0.021408	1	10512	10512		128.82	40.173	1				79179	4532	55306	55398	87326	87326					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	465.7607116699219	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.849	1	86.711	86.211	87.211	-0.13734								0	0	0	0.021408	1	10539	10539		128.82	40.173	1				79180	4532	55306	55398	87327	87327					0.03938945457775844
TLDDLIAAV	9	Unmodified	_TLDDLIAAV_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	465.76031494140625	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.021	1	86.884	86.384	87.384	-0.13734								0	0	0	0.17474	1	10564	10564		76.847	15.875	1				79181	4532	55306	55398	87328	87328					0.03938945457775844
TLDDVQAFL	9	Unmodified	_TLDDVQAFL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.2632141113281	2	511.263665	1020.51278	0.56916	0.00029099	-1.778	-0.00090903	-1.2088	-0.00061804	511.26347155286254	84.018	1.1063	83.806	83.221	84.327	-0.21159					56	25	3	0	0	0	0.20967	1	10150	10150		87.754	13.499	1	680170			79182	1565	55307	55399	87329	87329					0.003340439694284214
TLDDVQAFL	9	Unmodified	_TLDDVQAFL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.26214599609375	2	511.263665	1020.51278	0.28326	0.00014482	-1.375	-0.00070299	-1.0917	-0.00055817	511.2635691605744	83.938	1.1092	83.8	83.255	84.365	-0.13789					52	25	3	0	0	0	0.072054	1	10150	10150		120.62	41.17	1	685890			79183	1565	55307	55399	87330	87330					0.003340439694284214
TLDDVQAFL	9	Unmodified	_TLDDVQAFL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.263665	1020.51278	-0.92187	-0.00047132	1.2031	0.00061509	0.28121	0.00014377	511.26427569176366	83.946	0.60574	83.946	83.435	84.041	0	0.12807	0.00050678	NaN	120.62	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195800			79184	1565	55307	55399							0.003340439694284214
TLDDVQAFL	9	Unmodified	_TLDDVQAFL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	511.263665	1020.51278	-0.86799	-0.00044377	1.1277	0.00057655	0.25971	0.00013278	511.2640199108495	83.939	0.47472	83.855	83.474	83.949	-0.084641	0.037049	0.00042971	NaN	120.62	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170650			79185	1565	55307	55399							0.003340439694284214
TLDDVQAFL	9	Unmodified	_TLDDVQAFL_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.263665	1020.51278	-0.97278	-0.00049735	2.2999	0.0011758	1.3271	0.0006785	511.7668762851375	83.655	0.56041	83.681	83.384	83.945	0.026558	-0.13624	0.0016283	NaN	120.62	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365780			79186	1565	55307	55399							0.003340439694284214
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.8043212890625	2	537.805697	1073.59684	0.67436	0.00036268	-1.6093	-0.00086547	-0.9349	-0.00050279	537.8046524207342	37.216	0.52004	37.216	36.966	37.486	0					38	13	3	0	0	0	0.11727	2	3031	3019;3031		106.68	26.97	1	3138500			79187	18238	55308	55400	87331;87332	87332					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.8046264648438	2	537.805697	1073.59684	-0.1748	-9.401E-05	-0.65874	-0.00035427	-0.83354	-0.00044828	537.8051329376399	37.095	0.55639	37.031	36.749	37.305	-0.063385					37	14	3	0	0	0	0.46427	1	2993	2993		61.691	8.7546	1	2858700			79188	18238	55308	55400	87333	87333					0.06298575066307421
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.E607Cfs*7|1|0.35|ENSG00000124228|chr20:49238984-49238993|ATGGAGAAAG/-|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.805419921875	2	537.805697	1073.59684	-0.66127	-0.00035564	-0.3608	-0.00019404	-1.0221	-0.00054968	537.8053209816559	37.196	0.56663	37.228	36.996	37.563	0.032269					40	14	3	0	0	0	0.094442	3	2953	2953;2964;2977		112.41	30.17	1	2759100			79189	18238	55308	55400	87334;87335;87336	87334					0.06298575066307421
TLDELPMSQ	9	Unmodified	_TLDELPMSQ_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2965087890625	2	517.247157	1032.47976	-0.16743	-8.6601E-05	1.0403	0.0005381	0.8729	0.0004515	517.2464709853846	26.767	0.46971	26.599	26.339	26.809	-0.16816					19	10	3	0	0	0	0.024319	1	1402	1402		39.253	3.6345	1	167230	+		79190	28831	55309	55401	87337	87337					-0.03517906144929839
TLDESIYSNY	10	Unmodified	_TLDESIYSNY_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	602.7722778320312	2	602.772051	1203.52955	-0.68593	-0.00041346	0.59657	0.0003596	-0.089362	-5.3865E-05	602.7722834644597	64.329	0.78955	64.101	63.825	64.614	-0.22774					60	19	4	0	0	0	0.002678	3	7319	7306;7319;7331		186.41	98.656	1	2270100			79191	9280	55310	55402	87338;87339;87340	87339					-0.06407499935266969
TLDESIYSNY	10	Unmodified	_TLDESIYSNY_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	602.7723999023438	2	602.772051	1203.52955	-0.45155	-0.00027218	0.41874	0.00025241	-0.032804	-1.9773E-05	602.7721832934624	64.384	0.94817	64.187	63.835	64.783	-0.19696					65	23	4	0	0	0	0.022744	2	7327	7313;7327		160.82	88.944	1	2100700			79192	9280	55310	55402	87341;87342	87342					-0.06407499935266969
TLDESIYSNY	10	Unmodified	_TLDESIYSNY_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	602.7719116210938	2	602.772051	1203.52955	-0.62396	-0.00037611	0.51476	0.00031028	-0.10921	-6.5828E-05	602.7723399810574	64.44	0.66284	64.184	63.919	64.582	-0.25563					53	16	4	0	0	0	0.0074023	2	7308	7308;7320		173.39	91.087	1	2474500			79193	9280	55310	55402	87343;87344	87343					-0.06407499935266969
TLDEYTTRV	9	Unmodified	_TLDEYTTRV_					0	0	0		NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.2763671875	2	549.277303	1096.54005	-0.21921	-0.00012041	-0.35868	-0.00019702	-0.57789	-0.00031742	549.2769625269049	46.645	0.69701	46.645	46.343	47.04	0					39	18	3	0	0	0	0.26413	2	4631	4631;4641		80.455	22.225	1	2535700			79194	2790	55311	55403	87345;87346	87345					-0.0043547249019866285
TLDEYTTRV	9	Unmodified	_TLDEYTTRV_					0	0	0		NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.2764282226562	2	549.277303	1096.54005	-0.89736	-0.0004929	0.57433	0.00031546	-0.32303	-0.00017743	549.2774662490143	46.781	0.92206	46.628	46.309	47.231	-0.15301					51	24	3	0	0	0	0.28047	1	4631	4631		78.264	17.292	1	2354700			79195	2790	55311	55403	87347	87347					-0.0043547249019866285
TLDEYTTRV	9	Unmodified	_TLDEYTTRV_					0	0	0		NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	549.277303	1096.54005	-0.11027	-6.0568E-05	-0.2088	-0.00011469	-0.31907	-0.00017526	549.276924195812	46.647	0.49337	46.551	46.331	46.825	-0.096653	-0.063618	4.5261E-05	NaN	80.455	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	705470			79196	2790	55311	55403							-0.0043547249019866285
TLDEYTTRV	9	Unmodified	_TLDEYTTRV_					0	0	0		NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.277303	1096.54005	-0.040362	-2.217E-05	-0.73682	-0.00040472	-0.77718	-0.00042689	549.2767222611984	46.937	0.63509	46.667	46.452	47.087	-0.26939	0.052678	-0.00053479	NaN	80.455	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802140			79197	2790	55311	55403							-0.0043547249019866285
TLDEYTTRV	9	Unmodified	_TLDEYTTRV_					0	0	0		NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.277303	1096.54005	-0.65127	-0.00035773	-0.16935	-9.3022E-05	-0.82063	-0.00045075	549.2770604376885	46.776	0.50552	46.582	46.38	46.886	-0.19387	-0.032685	8.8599E-05	NaN	80.455	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834970			79198	2790	55311	55403							-0.0043547249019866285
TLDGSLHAV	9	Unmodified	_TLDGSLHAV_					0	0	0		ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF;ENST00000584041.1_1_17:62152499-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7427978515625	2	456.742899	911.471246	0.1035	4.7271E-05	-0.2334	-0.0001066	-0.1299	-5.9331E-05	456.742623380084	45.719	0.82555	45.623	45.326	46.152	-0.096653					53	22	4	0	0	0	0.59099	1	4370	4370		53.351	2.016	1	2131400			79199	8825	55312	55404	87348	87348					0.01196908000770236
TLDIKLALE	9	Unmodified	_TLDIKLALE_					0	0	0			REV__ENSG00000165462|ENST00000298231|PHOX2A	REV__ENSG00000165462|ENST00000298231|PHOX2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.31585693359375	2	508.305332	1014.59611	0.075282	3.8266E-05	0.068523	3.4831E-05	0.14381	7.3097E-05	508.3052830304914	68.68	0.65749	68.387	68.132	68.789	-0.29267					22	16	2	0	0	0	0.024205	1	8263	8263		63.306	15.391	1	406770	+		79200	21784	55313	55405	87349	87349					0.08939780417279053
TLDLDHLIL	9	Unmodified	_TLDLDHLIL_					0	0	0			REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.8012084960938	2	526.802957	1051.59136	-0.67997	-0.00035821	0.599	0.00031555	-0.08097	-4.2655E-05	526.803106718843	76.486	0.92637	76.258	75.927	76.853	-0.22843					68	22	5	0	0	0	0.29104	2	9378	9378;9390		76.847	8.3619	1	3284800	+		79201	22663	55314	55406	87350;87351	87350					0.06762896274517516
TLDLWALGSV	10	Unmodified	_TLDLWALGSV_					0	0	0		ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2774047851562	2	537.795132	1073.57571	0.24537	0.00013196	2.9081	0.0015639	3.1534	0.0016959	538.2985108578637	84.323	0.63917	84.119	83.82	84.459	-0.20329					19	14	2	0	0	0	0.03519	1	10205	10205		30.318	0	1	54244			79202	12950	55315	55407	87352	87352					0.0418660975747116
TLDPLYRELA	10	Unmodified	_TLDPLYRELA_					0	0	0		chr3:189960747-189963958|113|17.37|0.43|5.35|-|0|None,P3H2|1	chr3:189960747-189963958|113|17.37|0.43|5.35|-|0|None,P3H2|1	chr3:189960747-189963958|113|17.37|0.43|5.35|-|0|None,P3H2|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.2877807617188	2	595.824421	1189.63429	-0.67169	-0.00040021	2.299	0.0013698	1.6273	0.00096958	596.3269800089055	56.487	0.35477	56.32	56.165	56.52	-0.1672					18	8	3	0	0	0	0.03519	1	6150	6150		18.262	0	1	163160			79203	392	55316	55408	87353	87353					0.04705666331960856
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.7899780273438	2	577.790047	1153.56554	-0.22623	-0.00013071	-0.18095	-0.00010455	-0.40719	-0.00023527	577.7899401405625	78.329	1.6086	78.075	77.578	79.187	-0.25471					103	37	6	0	0	0	0.097953	3	9320	9320;9332;9344		136.27	70.465	1	3251000			79204	6691	55317	55409	87354;87355;87356	87354					-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.7904052734375	2	577.790047	1153.56554	-0.067364	-3.8922E-05	-0.22272	-0.00012868	-0.29008	-0.00016761	577.7898826865983	78.301	1.8151	78.07	77.458	79.273	-0.23141					100	42	4	0	0	0	0.26927	4	9335	9324;9335;9359;9378		112.41	31.588	1	3615200			79205	6691	55317	55409	87357;87358;87359;87360	87358					-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.790283203125	2	577.790047	1153.56554	-0.33933	-0.00019606	-0.046828	-2.7057E-05	-0.38615	-0.00022312	577.7900158203861	78.21	1.53	78.054	77.49	79.02	-0.15591					99	35	5	0	0	0	0.26927	4	9319	9298;9319;9331;9345		112.41	35.697	1	3450300			79206	6691	55317	55409	87361;87362;87363;87364	87362					-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.790047	1153.56554	-1.2231	-0.00070672	1.3458	0.00077758	0.12264	7.086E-05	577.7908599671377	78.183	0.48717	78.183	77.959	78.447	0	0.058983	0.0017192	NaN	136.27	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127970			79207	6691	55317	55409							-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	577.790047	1153.56554	0.51127	0.00029541	-0.536	-0.0003097	-0.024729	-1.4288E-05	577.7898865650469	78.319	0.61465	78.127	77.891	78.506	-0.19211	0.0024948	-0.00045532	NaN	136.27	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122080			79208	6691	55317	55409							-0.0050999796776523
TLDPQTGLFY	10	Unmodified	_TLDPQTGLFY_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.790047	1153.56554	-0.6358	-0.00036736	0.57219	0.0003306	-0.063609	-3.6752E-05	578.2916845931608	78.222	0.57542	78.238	78.031	78.606	0.015907	0.11299	0.00082528	NaN	136.27	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161680			79209	6691	55317	55409							-0.0050999796776523
TLDSKRLIN	9	Unmodified	_TLDSKRLIN_					0	0	0			REV__ENSG00000163632|ENST00000295896|C3orf49	REV__ENSG00000163632|ENST00000295896|C3orf49	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.279052734375	2	530.31148	1058.60841	-0.6347	-0.00033659	-3.6129	-0.001916	-4.2476	-0.0022525	530.8116740234055	69.517	0.20532	69.517	69.423	69.629	0					5	4	2	0	0	0	0.024323	1	8377	8377		44.117	10.601	1	64553	+		79210	25605	55318	55410	87365	87365					0.08144816880326289
TLDSPLGKL	9	Unmodified	_TLDSPLGKL_					0	0	0		ENST00000482547.1_1_10:131265539-131334642:+|nuORF;ENST00000482653.1_1_10:131265539-131362121:+|nuORF;ENSG00000170430|ENST00000651593|MGMT	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	ENST00000482547.1_1_10:131265539-131334642:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.28009033203125	2	472.276575	942.538597	-0.053444	-2.524E-05	-0.64146	-0.00030295	-0.69491	-0.00032819	472.27601031055593	56.348	1.1	56.192	55.48	56.58	-0.15601					45	29	2	0	0	0	0.20967	1	6233	6233		87.754	0.057861	1	5729500			79211	8039	55319	55411	87366	87366					0.06502938211713172
TLDVMKKPT	9	Unmodified	_TLDVMKKPT_					0	0	0		MMP13|p.R95T|1|0.13|ENSG00000137745|chr11:102955330-102955330|C/G|missense_variant	MMP13|p.R95T|1|0.13|ENSG00000137745|chr11:102955330-102955330|C/G|missense_variant	MMP13|p.R95T|1|0.13|ENSG00000137745|chr11:102955330-102955330|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7809448242188	2	516.791535	1031.56852	-1.1424	-0.00059037	3.048	0.0015752	1.9056	0.00098478	516.793236543899	44.589	0.64162	44.589	44.151	44.793	0					28	18	2	0	0	0	0.02435	1	4199	4199		19.997	0	1	254770			79212	17989	55320	55412	87367	87367					0.05399553885399655
TLEAFPDTV	9	Unmodified	_TLEAFPDTV_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.779296875	2	496.75039	991.486227	-0.85595	-0.00042519	-3.5236	-0.0017504	-4.3796	-0.0021756	496.74834226765705	51.373	0.69962	51.46	51.153	51.852	0.087006					58	19	5	0	0	0	0.024436	1	5335	5335		30.504	0	1	1741700	+		79213	27755	55321	55413	87368	87368					-0.009856449219114438
TLEAFVKED	9	Unmodified	_TLEAFVKED_					0	0	0		nc|ENSG00000165181|Q5VXU9-2|SHOC1;nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-2|SHOC1	nc|ENSG00000165181|Q5VXU9-2|SHOC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2852172851562	2	526.268947	1050.52334	-0.41537	-0.0002186	1.7375	0.00091438	1.3221	0.00069578	526.2697641131734	66.447	0.78979	66.198	65.741	66.531	-0.24839					35	21	2	0	0	0	0.0242	1	7565	7565		60.118	0	1	1308600			79214	7374	55322	55414	87369	87369					0.00010026623863268469
TLEAHKDP	8	Unmodified	_TLEAHKDP_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.73492431640625	2	455.735074	909.455596	0.099733	4.5452E-05	-0.033754	-1.5383E-05	0.065979	3.0069E-05	455.73501034504386	32.327	1.0471	32.091	31.782	32.829	-0.23666					65	24	4	0	0	0	0.71063	1	2221	2221		66.429	6.1353	1	710570			79215	18447	55323	55415	87370	87370					-0.0027537851628949284
TLEAKTNQV	9	Unmodified	_TLEAKTNQV_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.27447509765625	2	502.274564	1002.53457	-0.48341	-0.0002428	-0.23972	-0.00012041	-0.72313	-0.00036321	502.2744610648782	48.78	1.9579	48.628	48.295	50.253	-0.15277					142	54	5	0	0	0	0.067814	1	4981	4981		122.18	18.119	1	24249000	+		79216	21127	55324	55416	87371	87371					0.033408487179940494
TLEAKTNQV	9	Unmodified	_TLEAKTNQV_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-4|NIN	REV__nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2744140625	2	502.274564	1002.53457	-0.39647	-0.00019914	-0.3691	-0.00018539	-0.76558	-0.00038453	502.2744118269498	48.48	1.9747	48.547	48.191	50.165	0.066795					146	54	5	0	0	0	0.15366	1	4871	4871		98.629	8.2596	1	23991000	+		79217	21127	55324	55416	87372	87372					0.033408487179940494
TLEAQWREND	10	Unmodified	_TLEAQWREND_					0	0	0		ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.5294189453125	3	421.198436	1260.57348	3.3156	0.0013965	-0.43916	-0.00018497	2.8765	0.0012116	421.1980537010186	18.458	0.3999	18.215	18.074	18.474	-0.24256					13	7	3	0	0	0	0.03519	1	276	276		17.167	0	1	53632			79218	8752	55325	55417	87373	87373					-0.04638470718282406
TLEEAYRRLKL	11	Unmodified	_TLEEAYRRLKL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000480467.5_1_9:123151516-123165527:-|nuORF;ENST00000484546.1_1_9:123151516-123165527:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENST00000484546.1_1_9:123151516-123165527:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.75054931640625	3	464.605026	1390.79325	0.11362	5.2788E-05	-4.0831	-0.001897	-3.9694	-0.0018442	464.6030881531934	42.167	0.40239	42.167	41.987	42.389	0					14	11	2	0	0	0	0.024748	1	3877	3877		30.569	2.9249	1	84546			79219	5056;15302	55326	55418	87374	87374					0.11348379960077182
TLEEEMTKY	9	Unmodified	_TLEEEMTKY_					0	0	0		ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	ENSG00000185624|ENST00000331483|P4HB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.75439453125	2	572.265547	1142.51654	0.040417	2.3129E-05	-1.002	-0.00057343	-0.96161	-0.0005503	572.2648844648755	52.314	0.70609	52.13	51.487	52.193	-0.18404					22	18	2	0	0	0	0.023635	1	5412	5412		76.774	20.053	1	390060			79220	9457	55327	55419	87375	87375					-0.04901654319019144
TLEEFVGFH	9	Unmodified	_TLEEFVGFH_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2964477539062	2	539.763832	1077.51311	-0.73109	-0.00039462	0.73431	0.00039636	0.0032226	1.7394E-06	539.7641060618529	65.396	0.48569	65.434	65.221	65.706	0.037384					26	13	3	0	0	0	0.024436	1	7706	7706		47.916	24.873	1	281790			79221	7890	55328	55420	87376	87376					-0.022545363107155936
TLEELVQGTE	10	Unmodified	_TLEELVQGTE_					0	0	0		ENST00000498020.1_1_6:32908580-32908760:-|nuORF	ENST00000498020.1_1_6:32908580-32908760:-|nuORF	ENST00000498020.1_1_6:32908580-32908760:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.7827758789062	2	559.782418	1117.55028	-0.51084	-0.00028596	1.153	0.00064542	0.64214	0.00035946	559.783063625684	30.925	1.2074	30.747	30.083	31.29	-0.17818					81	29	4	0	0	0	0.88896	1	1993	1993		54.776	1.8396	1	7513400			79222	15611	55329	55421	87377	87377					-0.0037890955561579176
TLEEMIEC	8	Unmodified	_TLEEMIEC_					0	0	0			REV__nc|ENSG00000100526|Q16667-2|CDKN3	REV__nc|ENSG00000100526|Q16667-2|CDKN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.8082580566406	2	484.209186	966.403819	-0.94115	-0.00045571	2.4702	0.0011961	1.529	0.00074038	484.21025033220207	21.612	0.38769	21.399	21.167	21.555	-0.2128					11	7	2	0	0	0	0.027866	1	641	641		26.796	12.132	1	34480	+		79223	21130	55330	55422	87378	87378					-0.08072626316709375
TLEEMIEC	8	Unmodified	_TLEEMIEC_					0	0	0			REV__nc|ENSG00000100526|Q16667-2|CDKN3	REV__nc|ENSG00000100526|Q16667-2|CDKN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.209186	966.403819	0.47774	0.00023133	1.5733	0.00076179	2.051	0.00099312	484.2098486145983	21.456	0.33237	21.279	21.162	21.494	-0.17721	-0.0857	-0.00038396	NaN	42.474	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30449	+		79224	21130	55330	55422							-0.08072626316709375
TLEEMIEC	8	Unmodified	_TLEEMIEC_					0	0	0			REV__nc|ENSG00000100526|Q16667-2|CDKN3	REV__nc|ENSG00000100526|Q16667-2|CDKN3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	484.209186	966.403819	-0.08724	-4.2242E-05	1.8733	0.00090707	1.7861	0.00086483	484.209992157559	21.607	0.3377	21.416	21.275	21.613	-0.19072	0.051691	-9.3387E-05	NaN	42.474	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28512	+		79225	21130	55330	55422							-0.08072626316709375
TLEFLKLSI	9	Unmodified	_TLEFLKLSI_					0	0	0			REV__ENST00000474494.1_1_2:97373418-97377633:-|nuORF	REV__ENST00000474494.1_1_2:97373418-97377633:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.2794189453125	2	532.323525	1062.6325	-0.39403	-0.00020975	0.39032	0.00020778	-0.0037115	-1.9757E-06	532.3236158875876	67.599	0.82231	67.599	67.165	67.987	0					47	20	3	0	0	0	0.024257	1	8120	8120		41.427	0	1	1009900	+		79226	22158	55331	55423	87379	87379					0.10368657313983931
TLEGGKRIAY	10	Unmodified	_TLEGGKRIAY_					0	0	0		ENSG00000171503|ENST00000511912|ETFDH;nc|ENSG00000171503|Q16134-3|ETFDH	ENSG00000171503|ENST00000511912|ETFDH	ENSG00000171503|ENST00000511912|ETFDH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.831787109375	2	554.31148	1106.60841	-0.00088279	-4.8934E-07	-3.0519	-0.0016917	-3.0528	-0.0016922	554.3098905910755	53.539	0.3689	53.281	53.039	53.408	-0.25838					15	9	2	0	0	0	0.03519	1	5567	5567		21.96	0	1	414490			79227	8163	55332	55424	87380	87380					0.059368168803075605
TLEGLRPK	8	Unmodified	_TLEGLRPK_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.7870788574219	2	457.276909	912.539266	0.11466	5.2432E-05	-0.46035	-0.00021051	-0.34568	-0.00015807	457.27669455075704	21.307	0.82825	21.117	20.833	21.662	-0.19072					27	16	3	0	0	0	0.027866	1	613	613		25.45	11.675	1	76122	+		79228	26262	55333	55425	87381	87381					0.07949777651424483
TLEGLRPK	8	Unmodified	_TLEGLRPK_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.276909	912.539266	0.37781	0.00017277	-1.1066	-0.00050604	-0.72882	-0.00033327	457.2764664480557	21.186	0.91278	21.009	20.822	21.735	-0.17721	-0.10083	-2.7813E-07	NaN	18.324	26	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60769	+		79229	26262	55333	55425							0.07949777651424483
TLEGLRPK	8	Unmodified	_TLEGLRPK_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	457.276909	912.539266	-1.2542	-0.00057352	-3.3828	-0.0015469	-4.637	-0.0021204	457.27728634947334	21.416	0.82806	21.204	20.921	21.749	-0.2128	0.093885	-0.0020819	NaN	18.324	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47112	+		79230	26262	55333	55425							0.07949777651424483
TLEINGDSGAY	11	Unmodified	_TLEINGDSGAY_					0	0	0			REV__nc|ENSG00000123191|P35670-2|ATP7B	REV__nc|ENSG00000123191|P35670-2|ATP7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.2673950195312	2	570.264393	1138.51423	0.37356	0.00021303	4.0462	0.0023074	4.4197	0.0025204	570.2667806908839	78.73	1.2256	78.499	78.006	79.232	-0.23141					87	28	4	0	0	0	0.44817	1	9402	9402		79.713	2.866	1	825840	+		79231	36626	55334	55426	87382	87382					-0.049483667324466296
TLEKLISKKTS	11	Unmodified	_TLEKLISKKTS_					0	0	0			REV__ENST00000483120.1_1_1:15684662-15690294:+|nuORF	REV__ENST00000483120.1_1_1:15684662-15690294:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	624.3782348632812	2	624.382103	1246.74965	0.38145	0.00023817	-3.532	-0.0022053	-3.1506	-0.0019671	624.379794589076	105.22	0.4373	105.22	105.02	105.46	0.00096893					30	13	3	0	0	0	1.0075	1	13458	13458		35.152	4.8343	1	632940	+		79232	33502	55335	55427	87383	87383					0.13614770462936576
TLEKQFAH	8	Unmodified	_TLEKQFAH_					0	0	0			REV__ENSG00000144015|ENST00000272395|TRIM43	REV__ENSG00000144015|ENST00000272395|TRIM43	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2918395996094	2	487.258717	972.50288	-0.13782	-6.7155E-05	3.4151	0.001664	3.2772	0.0015969	487.26008839089076	55.704	0.58411	55.548	55.194	55.778	-0.15601					20	15	2	0	0	0	0.027866	1	6125	6125		42.474	21.528	1	151030	+		79233	24304	55336	55428	87384	87384					0.015529007547115725
TLELDFPPNP	10	Unmodified	_TLELDFPPNP_					0	0	0			REV__nc|ENSG00000091129|Q92823-3|NRCAM	REV__nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.7667236328125	2	571.790047	1141.56554	-0.11323	-6.4746E-05	1.7245	0.00098608	1.6113	0.00092133	571.7910882302596	47.315	1.0615	47.121	46.644	47.705	-0.19387					38	28	2	0	0	0	0.03519	1	4709	4709		29.17	3.596	1	149330	+		79234	20900	55337	55429	87385	87385					0.0004200203222808341
TLELFFHN	8	Unmodified	_TLELFFHN_					0	0	0		ENST00000318709.8_1_7:32627221-32627503:+|nuORF	ENST00000318709.8_1_7:32627221-32627503:+|nuORF	ENST00000318709.8_1_7:32627221-32627503:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.78216552734375	2	510.761092	1019.50763	-0.4721	-0.00024113	0.9726	0.00049676	0.5005	0.00025563	510.76114683666043	88.78	0.70378	88.609	88.421	89.125	-0.17054					33	16	3	0	0	0	0.027866	1	10865	10865		50.025	5.9077	1	263300			79235	12175	55338	55430	87386	87386					-0.0013421510253692759
TLELMSPDSF	10	Unmodified	_TLELMSPDSF_					0	0	0		DPP10|p.P310S|1|0.08|ENSG00000175497|chr2:115746161-115746161|C/T|missense_variant	DPP10|p.P310S|1|0.08|ENSG00000175497|chr2:115746161-115746161|C/T|missense_variant	DPP10|p.P310S|1|0.08|ENSG00000175497|chr2:115746161-115746161|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.2894897460938	2	570.26809	1138.52163	-0.045344	-2.5858E-05	-2.9194	-0.0016648	-2.9647	-0.0016907	570.2664364477554	73.67	0.63353	73.393	73.051	73.685	-0.2769					60	15	5	0	0	0	0.03519	1	8687	8687		53.351	0	1	970500			79236	668	55339	55431	87387	87387					-0.04209350456426364
TLELMSPDSF	10	Unmodified	_TLELMSPDSF_					0	0	0		DPP10|p.P310S|1|0.08|ENSG00000175497|chr2:115746161-115746161|C/T|missense_variant	DPP10|p.P310S|1|0.08|ENSG00000175497|chr2:115746161-115746161|C/T|missense_variant	DPP10|p.P310S|1|0.08|ENSG00000175497|chr2:115746161-115746161|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	570.26809	1138.52163	-0.30427	-0.00017351	-0.73355	-0.00041832	-1.0378	-0.00059183	570.2677823140007	73.547	0.69778	73.276	72.801	73.499	-0.27126	-0.058521	0.0023725	NaN	51.335	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72501			79237	668	55339	55431							-0.04209350456426364
TLELSTIQP	9	Unmodified	_TLELSTIQP_					0	0	0			REV__ENSG00000106823|ENST00000344604|ECM2	REV__ENSG00000106823|ENST00000344604|ECM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2746276855469	2	501.279315	1000.54408	-0.72507	-0.00036346	2.6678	0.0013373	1.9428	0.00097387	501.2788274184555	48.8	0.53666	48.867	48.588	49.125	0.066795					29	14	3	0	0	0	0.023837	1	4894	4894		64.207	0	1	152150	+		79238	21647	55340	55432	87388	87388					0.04382617003534506
TLELTKVWR	9	Unmodified	_TLELTKVWR_					0	0	0		ENST00000559872.1_1_15:65111421-65113323:-|nuORF;ENST00000558380.1_1_15:65112205-65113645:-|nuORF;nc|ENSG00000140451|Q9H611-4|PIF1;ENSG00000140451|ENST00000559239|PIF1;nc|ENSG00000140451|Q9H611-3|PIF1	ENST00000559872.1_1_15:65111421-65113323:-|nuORF	ENST00000559872.1_1_15:65111421-65113323:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2579956054688	2	573.337498	1144.66044	0.61351	0.00035175	-0.58087	-0.00033303	0.03264	1.8714E-05	573.3368999162836	79.805	0.83713	79.558	79.028	79.865	-0.2465					43	19	3	0	0	0	0.024319	1	9543	9543		66.429	18.772	1	597630			79239	5412	55341	55433	87389	87389					0.0938998029407685
TLELTKVWR	9	Unmodified	_TLELTKVWR_					0	0	0		ENST00000559872.1_1_15:65111421-65113323:-|nuORF;ENST00000558380.1_1_15:65112205-65113645:-|nuORF;nc|ENSG00000140451|Q9H611-4|PIF1;ENSG00000140451|ENST00000559239|PIF1;nc|ENSG00000140451|Q9H611-3|PIF1	ENST00000559872.1_1_15:65111421-65113323:-|nuORF	ENST00000559872.1_1_15:65111421-65113323:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2569580078125	2	573.337498	1144.66044	0.042013	2.4087E-05	-0.21297	-0.00012211	-0.17096	-9.8018E-05	573.3372430127845	79.732	0.79869	79.581	79.067	79.866	-0.15051					39	18	3	0	0	0	0.024021	1	9513	9513		68.787	8.6686	1	503320			79240	5412	55341	55433	87390	87390					0.0938998029407685
TLEPHQEEY	9	Unmodified	_TLEPHQEEY_					0	0	0			REV__nc|ENSG00000008517|P24001|IL32	REV__nc|ENSG00000008517|P24001|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.2579956054688	2	573.259111	1144.50367	0.61039	0.00034991	1.3411	0.00076879	1.9515	0.0011187	573.2593967136529	79.771	0.91925	79.525	79.236	80.156	-0.2465					91	21	6	0	0	0	0.29158	1	9543	9543		76.774	2.5191	1	2659500	+		79241	36433	55342	55434	87391	87391					-0.06280349386884154
TLEPHQEEY	9	Unmodified	_TLEPHQEEY_					0	0	0			REV__nc|ENSG00000008517|P24001|IL32	REV__nc|ENSG00000008517|P24001|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.2576904296875	2	573.259111	1144.50367	0.14687	8.4197E-05	1.9024	0.0010906	2.0493	0.0011748	573.2595584216349	79.77	1.0849	79.55	79.202	80.287	-0.21923					99	25	7	0	0	0	0.23085	1	9563	9563		84.916	16.129	1	2848100	+		79242	36433	55342	55434	87392	87392					-0.06280349386884154
TLEPLLIK	8	Unmodified	_TLEPLLIK_					0	0	0			REV__ENST00000491554.6_1_15:40716399-40727929:+|nuORF	REV__ENST00000491554.6_1_15:40716399-40727929:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7995910644531	2	463.799686	925.584819	0.0090014	4.1748E-06	0.37467	0.00017377	0.38367	0.00017795	463.7997091602389	103.02	1.1333	103.03	102.74	103.88	0.0054245					61	28	3	0	0	0	1.0574	1	13188	13188		14.664	0	1	753020	+		79243	33452	55343	55435	87393	87393					0.11905003113815837
TLEQKKKS	8	Unmodified	_TLEQKKKS_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;TRIM59|p.T205M|1|0.47|ENSG00000213186|chr3:160438570-160438570|G/A|missense_variant;TRIM59|p.I302Sfs*17|1|0.19|ENSG00000213186|chr3:160438280-160438281|TG/-|frameshift_variant;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80;ENSG00000213186|ENST00000309784|TRIM59	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2884826660156	2	481.287474	960.560395	0.72725	0.00035002	3.0032	0.0014454	3.7305	0.0017954	481.2888045720546	62.94	1.3548	62.995	62.557	63.912	0.054104					102	35	4	0	0	0	0.74904	1	7259	7259		63.306	0	1	10782000			79244	18070;10493	55344	55436	87394	87394					0.07853742960287491
TLERAPGQR	9	Unmodified	_TLERAPGQR_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8157958984375	2	514.285797	1026.55704	-0.33792	-0.00017379	-1.9451	-0.0010003	-2.283	-0.0011741	514.2845504269849	60.315	0.41018	60.315	60.027	60.437	0					15	10	2	0	0	0	0.024457	1	6902	6902		29.15	0	1	72302			79245	10973	55345	55437	87395	87395					0.044824929062770025
TLETRKPTL	9	Unmodified	_TLETRKPTL_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.78515625	2	529.813856	1057.61316	-0.72918	-0.00038633	0.47018	0.00024911	-0.25899	-0.00013722	529.8140122013505	53.427	0.6083	53.523	53.266	53.874	0.095669					41	16	4	0	0	0	0.024374	1	5683	5683		58.782	19.529	1	1436700	+		79246	24708	55346	55438	87396	87396					0.0866570102307378
TLETRKPTL	9	Unmodified	_TLETRKPTL_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	529.813856	1057.61316	-0.78956	-0.00041832	0.83913	0.00044458	0.04957	2.6263E-05	529.8142244949796	53.57	0.42175	53.434	53.208	53.63	-0.13617	-0.0088607	0.00060413	NaN	58.782	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504680	+		79247	24708	55346	55438							0.0866570102307378
TLETRKPTL	9	Unmodified	_TLETRKPTL_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.813856	1057.61316	-0.29031	-0.00015381	-6.7694	-0.0035865	-7.0597	-0.0037403	529.8104232888138	53.444	0.25959	53.186	53.039	53.298	-0.25838	-0.25747	-0.0074581	NaN	58.782	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123750	+		79248	24708	55346	55438							0.0866570102307378
TLETRKPTL	9	Unmodified	_TLETRKPTL_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.813856	1057.61316	-0.28055	-0.00014864	-0.072119	-3.8209E-05	-0.35266	-0.00018685	529.8137930779253	53.625	0.50185	53.428	53.238	53.74	-0.19739	-0.015674	-0.00036146	NaN	58.782	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487490	+		79249	24708	55346	55438							0.0866570102307378
TLETRVREL	9	Unmodified	_TLETRVREL_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF;ENST00000373551.4_1_9:127662694-127674188:-|nuORF	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.8005981445312	2	558.822212	1115.62987	-0.12442	-6.9528E-05	1.8376	0.0010269	1.7132	0.00095737	558.8248492867915	86.904	0.37759	86.767	86.618	86.995	-0.13734					10	8	2	0	0	0	0.02435	1	10528	10528		19.997	0.89325	1	63177			79250	5070	55347	55439	87397	87397					0.07668201909041272
TLEVTKNWSL	10	Unmodified	_TLEVTKNWSL_					0	0	0			REV__nc|ENSG00000196358|Q96CW9-2|NTNG2	REV__nc|ENSG00000196358|Q96CW9-2|NTNG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.2596435546875	2	595.824421	1189.63429	-0.5711	-0.00034028	0.26965	0.00016066	-0.30145	-0.00017961	595.8244848973445	76.667	0.63566	76.499	76.223	76.859	-0.16854					33	14	3	0	0	0	0.03519	1	9076	9076		71.877	6.4121	1	661960	+		79251	28170	55348	55440	87398	87398					0.04705666331960856
TLEYSLTAMP	10	Unmodified	_TLEYSLTAMP_					0	0	0			REV__ENSG00000173705|ENST00000309558|SUSD5	REV__ENSG00000173705|ENST00000309558|SUSD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.2764282226562	2	563.278457	1124.54236	0.36435	0.00020523	-3.7763	-0.0021271	-3.4119	-0.0019219	563.2763621872085	81.853	2.3968	81.624	81.022	83.418	-0.2289					176	55	5	0	0	0	0.67706	1	9873	9873		68.787	10.005	1	5689700	+		79252	26800	55349	55441	87399	87399					-0.014927600767578042
TLFATEDAF	9	Unmodified	_TLFATEDAF_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3030700683594	2	507.742565	1013.47058	0.12674	6.4349E-05	-2.6539	-0.0013475	-2.5272	-0.0012832	507.7413076482677	56.92	0.98435	56.718	56.012	56.996	-0.20209					35	25	2	0	0	0	0.024381	1	6203	6203		45.952	15.448	1	556330			79253	18528;8481	55350	55442	87400	87400					-0.03561931438946431
TLFAVALEL	9	Unmodified	_TLFAVALEL_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3-1|USP25	REV__nc|ENSG00000155313|Q9UHP3-1|USP25	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7900390625	2	488.789318	975.564084	0.32519	0.00015895	-0.50975	-0.00024916	-0.18456	-9.0211E-05	488.7889567870726	100.57	0.45241	100.4	100.18	100.63	-0.17088					21	11	3	0	0	0	0.67308	1	12476	12476		47.916	0	1	352220	+		79254	25002	55351	55443	87401	87401					0.07532412734121863
TLFDLLSSI	9	Unmodified	_TLFDLLSSI_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2753601074219	2	504.784233	1007.55391	-0.049796	-2.5136E-05	-1.4281	-0.00072089	-1.4779	-0.00074603	504.78334579607116	57.173	1.6042	57.009	56.129	57.733	-0.16431					109	43	4	0	0	0	0.023817	1	6341	6341		42.396	9.5837	1	1486500	+		79255	23835	55352	55444	87402	87402					0.050438050089155695
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	578.3049926757812	2	578.305864	1154.59717	-1.6875	-0.00097591	1.2329	0.000713	-0.45461	-0.00026291	578.3065988710078	75.857	3.0077	75.857	75.481	78.489	0					214	74	5	0	0	0	0.014738	14	9302	9302;9310;9322;9334;9347;9359;9370;9383;9395;9407;9419;9431;9444;9457		163.15	98.944	1	45774000			79256	362	55353	55445	87403;87404;87405;87406;87407;87408;87409;87410;87411;87412;87413;87414;87415;87416	87403					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.3055419921875	2	578.305864	1154.59717	-0.72601	-0.00041986	0.19292	0.00011157	-0.53309	-0.00030829	578.3059832832781	76.023	2.9263	75.779	75.443	78.369	-0.24447					186	72	5	0	0	0	0.014738	13	9294	9294;9304;9316;9327;9340;9352;9364;9377;9389;9402;9420;9433;9445		163.15	88.447	1	49165000			79257	362	55353	55445	87417;87418;87419;87420;87421;87422;87423;87424;87425;87426;87427;87428;87429	87417					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.3058471679688	2	578.305864	1154.59717	0.084501	4.8868E-05	-0.48595	-0.00028103	-0.40145	-0.00023216	578.3056419230079	75.87	2.8877	75.881	75.505	78.393	0.011642					181	71	6	0	0	0	0.014738	13	9228	9228;9239;9251;9263;9276;9287;9299;9311;9326;9338;9350;9362;9375		163.15	87.258	1	45026000			79258	362	55353	55445	87430;87431;87432;87433;87434;87435;87436;87437;87438;87439;87440;87441;87442	87430					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.30615234375	2	578.305864	1154.59717	-0.46576	-0.00026935	-0.0041391	-2.3936E-06	-0.4699	-0.00027174	578.305917589013	76.029	1.5768	75.756	75.384	76.961	-0.27266					74	38	2	0	0	0	0.013065	10	9013	8979;8989;9001;9013;9025;9038;9050;9063;9077;9143		176.44	106.82	1	25495000			79259	362	55353	55445	87443;87444;87445;87446;87447;87448;87449;87450;87451;87452	87446					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.305419921875	2	578.305864	1154.59717	-0.61414	-0.00035516	0.16338	9.4484E-05	-0.45076	-0.00026068	578.3059965131108	75.987	1.6075	75.728	75.358	76.965	-0.25866					78	39	2	0	0	0	0.013065	10	9023	8988;8999;9011;9023;9035;9049;9061;9072;9093;9128		190.26	107.96	1	24414000			79260	362	55353	55445	87453;87454;87455;87456;87457;87458;87459;87460;87461;87462	87456					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;chr19:4910246-4910876|490|11.81|0.53|4.47|+|ENST00000615884|UHRF1,UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3057250976562	2	578.305864	1154.59717	-0.26828	-0.00015515	-0.31494	-0.00018213	-0.58322	-0.00033728	578.3057002256704	75.833	2.0592	75.658	74.986	77.045	-0.17548					133	50	5	0	0	0	0.013337	10	8985	8950;8960;8972;8985;8998;9010;9022;9035;9058;9078		185.55	101.4	1	25667000			79261	362	55353	55445	87463;87464;87465;87466;87467;87468;87469;87470;87471;87472	87466					0.02605994786199517
TLFEPYTFR	9	Unmodified	_TLFEPYTFR_					0	0	0		ENST00000470787.6_1_1:249150751-249153213:-|nuORF	ENST00000470787.6_1_1:249150751-249153213:-|nuORF	ENST00000470787.6_1_1:249150751-249153213:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	588.2980346679688	2	587.300581	1172.58661	0.8264	0.00048534	-2.0653	-0.001213	-1.239	-0.00072764	587.2993402773401	53.832	0.90511	53.928	53.519	54.424	0.096149					41	25	2	0	0	0	0.024495	1	5813	5813		34.173	0	1	196010			79262	14940	55354	55446	87473	87473					0.007220121317459416
TLFEVRRRL	9	Unmodified	_TLFEVRRRL_					0	0	0		ENST00000313754.4_1_3:94226315-94226441:-|nuORF	ENST00000313754.4_1_3:94226315-94226441:-|nuORF	ENST00000313754.4_1_3:94226315-94226441:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	595.8244018554688	2	595.361839	1188.70913	-0.717	-0.00042687	2.4152	0.0014379	1.6982	0.0010111	595.3630761897282	76.947	0.3745	76.779	76.525	76.899	-0.16854					15	8	2	0	0	0	0.024374	1	9101	9101		58.782	18.004	1	188870			79263	12105	55355	55447	87474	87474					0.12231893653847692
TLFEVRRRL	9	Unmodified	_TLFEVRRRL_					0	0	0		ENST00000313754.4_1_3:94226315-94226441:-|nuORF	ENST00000313754.4_1_3:94226315-94226441:-|nuORF	ENST00000313754.4_1_3:94226315-94226441:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	595.361839	1188.70913	-0.99851	-0.00059447	3.3492	0.001994	2.3507	0.0013995	595.363581206374	77.014	0.83265	77.014	76.84	77.672	0	0.10473	0.00062583	NaN	58.782	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	524680			79264	12105	55355	55447							0.12231893653847692
TLFEVRRRL	9	Unmodified	_TLFEVRRRL_					0	0	0		ENST00000313754.4_1_3:94226315-94226441:-|nuORF	ENST00000313754.4_1_3:94226315-94226441:-|nuORF	ENST00000313754.4_1_3:94226315-94226441:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	595.361839	1188.70913	-0.24169	-0.0001439	2.9667	0.0017663	2.725	0.0016224	595.8651748796431	77.029	0.75653	77.043	76.859	77.616	0.013504	0.13336	0.00017039	NaN	58.782	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644870			79265	12105	55355	55447							0.12231893653847692
TLFEWELI	8	Unmodified	_TLFEWELI_					0	0	0			REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	REV__ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.306396484375	2	525.778951	1049.54335	-0.31531	-0.00016578	-3.8924	-0.0020465	-4.2077	-0.0022123	525.7768557932674	73.817	1.2161	73.826	73.598	74.814	0.0096512					58	28	3	0	0	0	0.027866	1	8942	8942		25.45	4.9683	1	1843500	+		79266	23241	55356	55448	87475	87475					0.02055822354486736
TLFFHYIK	8	Unmodified	_TLFFHYIK_					0	0	0		nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3181762695312	2	534.797478	1067.5804	-0.31181	-0.00016676	-2.9474	-0.0015762	-3.2592	-0.001743	534.796246313157	33.877	0.59299	33.653	33.404	33.997	-0.22412					21	14	2	0	0	0	0.027866	1	2425	2425		25.45	2.4077	1	66951			79267	7306	55357	55449	87476	87476					0.049315386908801884
TLFIGHTIC	9	Unmodified	_TLFIGHTIC_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.30560302734375	2	502.76532	1003.51609	0.17012	8.5532E-05	-2.4368	-0.0012252	-2.2667	-0.0011396	502.7627612008004	52.438	0.38964	52.29	52.057	52.447	-0.14723					16	9	2	0	0	0	0.024487	1	5597	5597		31.955	0	1	177960			79268	18737	55358	55450	87477	87477					0.014470155424419318
TLFLERGPN	9	Unmodified	_TLFLERGPN_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.794921875	2	523.785099	1045.55564	0.24797	0.00012988	0.70039	0.00036686	0.94837	0.00049674	523.7851592489436	68.57	0.52296	68.589	68.276	68.799	0.018913					22	13	2	0	0	0	0.024344	1	8115	8115		30.318	8.3578	1	123210			79269	9034	55359	55451	87478	87478					0.03468858817518594
TLFMFMLN	8	Unmodified	_TLFMFMLN_					0	0	0		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	508.750824	1015.4871	-0.45885	-0.00023344	3.8906	0.0019793	3.4317	0.0017459	508.75278811470025	61.119	0.59915	60.906	60.567	61.166	-0.21339					28	15	2	0	0	0	0.027866	1	7007	7007		40.573	0	1	434040			79270	8486	55360	55452	87479	87479					-0.02002845078197879
TLFNVIKSV	9	Unmodified	_TLFNVIKSV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.8081970214844	2	510.808042	1019.60153	0.10027	5.1219E-05	-0.51323	-0.00026216	-0.41296	-0.00021094	510.80756463377423	68.647	0.76184	68.354	68.171	68.933	-0.29266					65	19	4	0	0	0	0.023452	2	8217	8204;8217		146.79	9.7965	1	2525600			79271	2051	55361	55453	87480;87481	87481					0.09251503999769284
TLFNVIKSV	9	Unmodified	_TLFNVIKSV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.80780029296875	2	510.808042	1019.60153	-0.66265	-0.00033849	0.35278	0.0001802	-0.30987	-0.00015828	510.80810425423454	68.62	0.89492	68.359	67.98	68.875	-0.26165					44	21	3	0	0	0	0.12933	1	7944	7944		104.01	18.853	1	964680			79272	2051	55361	55453	87482	87482					0.09251503999769284
TLFPNAIAR	9	Unmodified	_TLFPNAIAR_					0	0	0		nc|ENSG00000204361|Q96DL1-3|NXPE2;ENSG00000204361|ENST00000389586|NXPE2	nc|ENSG00000204361|Q96DL1-3|NXPE2	nc|ENSG00000204361|Q96DL1-3|NXPE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2745056152344	2	501.790184	1001.56581	-0.46901	-0.00023534	-3.6755	-0.0018443	-4.1445	-0.0020796	502.2907243510533	48.574	0.31151	48.574	48.413	48.724	0					14	8	2	0	0	0	0.024021	1	4987	4987		58.782	0	1	159370			79273	10334	55362	55454	87483	87483					0.06509466542752307
TLFPPSSLH	9	Unmodified	_TLFPPSSLH_					0	0	0		ENST00000446344.3_1_16:87733890-87734520:-|nuORF	ENST00000446344.3_1_16:87733890-87734520:-|nuORF	ENST00000446344.3_1_16:87733890-87734520:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3069763183594	2	499.768917	997.523281	-0.38501	-0.00019241	-3.2206	-0.0016096	-3.6056	-0.001802	499.76709486993866	31.06	0.55087	31.072	30.831	31.382	0.011799					29	12	4	0	0	0	0.024386	1	2029	2029		25.45	0	1	602640			79274	14455	55363	55455	87484	87484					0.024420714145321654
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.28887939453125	2	481.289485	960.564418	-0.27734	-0.00013348	-0.30554	-0.00014705	-0.58287	-0.00028053	481.289185613373	62.96	1.895	62.96	62.489	64.384	0					106	50	4	0	0	0	0.1158	2	7356	7343;7356		107.01	46.036	1	11079000			79275	3398	55364	55456	87485;87486	87486					0.08255832453994572
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.288330078125	2	481.289485	960.564418	-0.092407	-4.4475E-05	-0.34495	-0.00016602	-0.43736	-0.0002105	481.2891873661578	63.245	2.4829	63.006	62.451	64.934	-0.23926					142	65	4	0	0	0	0.12914	4	7349	7337;7349;7363;7375		104.06	47.336	1	10301000			79276	3398	55364	55456	87487;87488;87489;87490	87488					0.08255832453994572
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2873229980469	2	481.289485	960.564418	0.72725	0.00035002	-1.1759	-0.00056597	-0.4487	-0.00021595	481.2888045720546	62.94	1.3548	62.995	62.557	63.912	0.054104					102	35	4	0	0	0	0.22902	3	7247	7247;7271;7299		85.161	35.719	1	10782000			79277	3398	55364	55456	87491;87492;87493	87491					0.08255832453994572
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.289485	960.564418	0.44789	0.00021557	-0.91823	-0.00044193	-0.47033	-0.00022637	481.28878059433714	63.197	0.48532	62.976	62.734	63.219	-0.22097	-0.010616	-0.00022428	NaN	107.01	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245190			79278	3398	55364	55456							0.08255832453994572
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.289485	960.564418	-0.36122	-0.00017385	0.012309	5.9242E-06	-0.34891	-0.00016793	481.289518572952	63.185	0.52873	63.002	62.704	63.233	-0.18386	0.015396	0.00067144	NaN	107.01	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242130			79279	3398	55364	55456							0.08255832453994572
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.289485	960.564418	0.41661	0.00020051	-1.4048	-0.00067611	-0.98818	-0.0004756	481.28863456934295	63.238	0.52585	62.98	62.75	63.276	-0.25824	-0.0065152	-0.00069264	NaN	107.01	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321790			79280	3398	55364	55456							0.08255832453994572
TLFPVRLLV	9	Unmodified	_TLFPVRLLV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3421630859375	2	529.342052	1056.66955	-1.0324	-0.00054649	0.94348	0.00049942	-0.088925	-4.7072E-05	529.3423779600739	84.028	1.0174	84.028	83.692	84.709	0					62	23	4	0	0	0	0.75397	1	10517	10517		42.396	3.59	1	663930			79281	6345	55365	55457	87494	87494					0.14348373650409485
TLFPVRLLV	9	Unmodified	_TLFPVRLLV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.342041015625	2	529.342052	1056.66955	-1.2129	-0.00064203	0.99302	0.00052565	-0.21986	-0.00011638	529.3424211152612	84.014	0.77075	83.941	83.657	84.427	-0.072777					43	17	3	0	0	0	0.42604	1	10483	10483		64.207	14.766	1	757630			79282	6345	55365	55457	87495	87495					0.14348373650409485
TLFPVRLLV	9	Unmodified	_TLFPVRLLV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.3419189453125	2	529.342052	1056.66955	-0.64323	-0.00034049	0.56829	0.00030082	-0.074945	-3.9672E-05	529.3421717885531	83.971	1.476	83.998	83.684	85.16	0.026558					60	34	3	0	0	0	0.75397	1	10430	10430		42.396	3.1433	1	643150			79283	6345	55365	55457	87496	87496					0.14348373650409485
TLFQESEL	8	Unmodified	_TLFQESEL_					0	0	0			REV__ENST00000558243.1_1_15:40330963-40331317:-|nuORF	REV__ENST00000558243.1_1_15:40330963-40331317:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.259765625	2	483.742565	965.470577	0.053257	2.5763E-05	0.7007	0.00033896	0.75395	0.00036472	483.7429027015702	27.563	0.75454	27.406	26.93	27.685	-0.15664					34	17	3	0	0	0	0.027866	1	1513	1513		63.306	5.495	1	533610	+		79284	24002	55366	55458	87497	87497					-0.01353931438939071
TLFQSHLL	8	Unmodified	_TLFQSHLL_					0	0	0			REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	REV__nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.77142333984375	2	479.77146	957.528367	0.28083	0.00013473	-0.43041	-0.0002065	-0.14958	-7.1765E-05	479.771175165179	74.985	1.3386	74.726	73.986	75.325	-0.25887					89	32	5	0	0	0	0.93274	1	9172	9172		47.916	0	1	8055700	+		79285	24362	55367	55459	87498	87498					0.047903752771503605
TLFRRGPQ	8	Unmodified	_TLFRRGPQ_					0	0	0		ENST00000598118.1_1_19:35506495-35517042:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7568664550781	2	487.780151	973.545748	0.10911	5.322E-05	-0.85471	-0.00041691	-0.7456	-0.00036369	487.77981074026474	36.493	1.535	36.276	35.779	37.314	-0.21661					106	39	5	0	0	0	0.027866	1	2995	2995		76.847	23.91	1	2045400			79286	1906	55368	55460	87499	87499					0.057917156028111094
TLFRVICL	8	Unmodified	_TLFRVICL_					0	0	0		SCN2A|p.R1629C|1|0.26|ENSG00000136531|chr2:165388691-165388691|C/T|missense_variant	SCN2A|p.R1629C|1|0.26|ENSG00000136531|chr2:165388691-165388691|C/T|missense_variant	SCN2A|p.R1629C|1|0.26|ENSG00000136531|chr2:165388691-165388691|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7844543457031	2	482.786056	963.557558	0.15862	7.6582E-05	-3.5561	-0.0017169	-3.3975	-0.0016403	482.7841340513957	72.666	0.99342	72.675	72.371	73.365	0.009758					68	24	4	0	0	0	1.0239	1	8770	8770		33.516	0.022601	1	1708200			79287	37862	55369	55461	87500	87500					0.07432196301772365
TLFSEKLKL	9	Unmodified	_TLFSEKLKL_					0	0	0			REV__ENSG00000196260|ENST00000359086|SFTA2	REV__ENSG00000196260|ENST00000359086|SFTA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7922973632812	2	539.828975	1077.6434	0.17035	9.1961E-05	-2.1849	-0.0011795	-2.0145	-0.0010875	539.8277791987831	65.887	0.53191	65.887	65.494	66.026	0					21	13	3	0	0	0	0.023837	1	7801	7801		37.812	0	1	216130	+		79288	28154	55370	55462	87501	87501					0.10768059688280118
TLFSFISN	8	Unmodified	_TLFSFISN_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	chr7:40815803-40860316|321|17.55|0.3|5.87|+|1|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2791442871094	2	464.742368	927.470183	0.026701	1.2409E-05	0.64097	0.00029789	0.66767	0.00031029	464.742549539145	50.616	0.56416	50.466	50.193	50.758	-0.14915					35	16	3	0	0	0	0.027866	1	5272	5272		20.947	15.86	1	975840			79289	422	55371	55463	87502	87502					0.00354693631857117
TLFSKALN	8	Unmodified	_TLFSKALN_					0	0	0		ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.26861572265625	2	447.258185	892.501818	0.22954	0.00010266	0.70507	0.00031535	0.93461	0.00041801	447.25852307057175	63.534	1.3079	63.283	62.642	63.95	-0.25141					46	34	2	0	0	0	0.027866	1	7346	7346		16.473	0	1	488480			79290	1065	55372	55464	87503	87503					0.05126686385813173
TLFTLLTLD	9	Unmodified	_TLFTLLTLD_					0	0	0		ENSG00000175294|ENST00000312106|CATSPER1;ENST00000529244.1_1_11:65786354-65788652:-|nuORF	ENSG00000175294|ENST00000312106|CATSPER1	ENSG00000175294|ENST00000312106|CATSPER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7696533203125	2	518.799883	1035.58521	-0.84126	-0.00043645	-1.0272	-0.00053293	-1.8685	-0.00096938	518.7988121496476	35.879	0.44659	35.923	35.658	36.105	0.044056					16	11	2	0	0	0	0.024263	1	2701	2701		34.173	8.5985	1	77055			79291	8547	55373	55465	87504	87504					0.06884378042991557
TLFTNIPVT	9	Unmodified	_TLFTNIPVT_					0	0	0		nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13;ENST00000508304.5_1_5:64920917-64948411:+|nuORF;nc|ENSG00000113597|A5PLN9-7|TRAPPC13;ENST00000512009.5_1_5:64920875-64956772:+|nuORF;TRAPPC13|p.R288Gfs*30|1|0.47|ENSG00000113597|chr5:65660860-65660860|A/-|frameshift_variant	nc|ENSG00000113597|A5PLN9-2|TRAPPC13	nc|ENSG00000113597|A5PLN9-2|TRAPPC13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2478332519531	2	503.2844	1004.55425	-0.75752	-0.00038125	0.41481	0.00020877	-0.34272	-0.00017248	503.2844176469712	60.823	0.60015	60.609	60.273	60.873	-0.21339					31	12	4	0	0	0	0.024205	1	7003	7003		63.306	15.391	1	759000			79292	3310	55374	55466	87505	87505					0.052152247287722275
TLFTNIPVT	9	Unmodified	_TLFTNIPVT_					0	0	0		nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13;ENST00000508304.5_1_5:64920917-64948411:+|nuORF;nc|ENSG00000113597|A5PLN9-7|TRAPPC13;ENST00000512009.5_1_5:64920875-64956772:+|nuORF;TRAPPC13|p.R288Gfs*30|1|0.47|ENSG00000113597|chr5:65660860-65660860|A/-|frameshift_variant	nc|ENSG00000113597|A5PLN9-2|TRAPPC13	nc|ENSG00000113597|A5PLN9-2|TRAPPC13	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.2844	1004.55425	-1.684	-0.00084751	1.1193	0.00056333	-0.56465	-0.00028418	503.2847453252848	60.503	0.55711	60.582	60.165	60.722	0.078888	-0.0024247	0.00065002	NaN	35.618	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590350			79293	3310	55374	55466							0.052152247287722275
TLFTTFFVV	9	Unmodified	_TLFTTFFVV_					0	0	0			REV__ENSG00000187581|ENST00000342144|COX8C	REV__ENSG00000187581|ENST00000342144|COX8C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.28271484375	2	537.797143	1073.57973	-1.3875	-0.0007462	-2.881	-0.0015494	-4.2685	-0.0022956	537.7958080363496	65.062	0.44585	64.859	64.617	65.063	-0.20254					23	10	3	0	0	0	0.024412	1	7452	7452		31.955	0	1	462350	+		79294	27945	55375	55467	87506	87506					0.045886992511896096
TLFTTFFVV	9	Unmodified	_TLFTTFFVV_					0	0	0			REV__ENSG00000187581|ENST00000342144|COX8C	REV__ENSG00000187581|ENST00000342144|COX8C	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.797143	1073.57973	-1.4061	-0.00075617	-2.5639	-0.0013788	-3.9699	-0.002135	537.7960126319971	64.774	0.70827	64.774	64.347	65.055	0	-0.047086	0.00022081	NaN	38.806	63	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1906300	+		79295	27945	55375	55467							0.045886992511896096
TLFTTFFVV	9	Unmodified	_TLFTTFFVV_					0	0	0			REV__ENSG00000187581|ENST00000342144|COX8C	REV__ENSG00000187581|ENST00000342144|COX8C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.797143	1073.57973	-1.227	-0.00065985	-4.6346	-0.0024925	-5.8616	-0.0031523	537.7958845513705	64.793	0.67712	64.83	64.44	65.117	0.037384	0.0088395	-0.0020065	NaN	38.806	63	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1696500	+		79296	27945	55375	55467							0.045886992511896096
TLGAHPSASPG	11	Unmodified	_TLGAHPSASPG_					0	0	0			REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	REV__ENST00000349048.8_1_21:45746814-45747210:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.26837158203125	2	497.751256	993.487959	-0.32309	-0.00016082	1.9728	0.00098195	1.6497	0.00082113	497.7523734880991	35.157	0.48283	35.201	35.014	35.497	0.044056					19	12	2	0	0	0	0.024785	1	2615	2615		54.776	0	1	229950	+		79297	30721	55376	55468	87507	87507					-0.009045911132830042
TLGARVRAS	9	Unmodified	_TLGARVRAS_					0	0	0		SPATA31E1|p.S1052R|1|0.34|ENSG00000177992|chr9:87887641-87887641|A/C|missense_variant	SPATA31E1|p.S1052R|1|0.34|ENSG00000177992|chr9:87887641-87887641|A/C|missense_variant	SPATA31E1|p.S1052R|1|0.34|ENSG00000177992|chr9:87887641-87887641|A/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.777587890625	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.99726	1	9754	9754		20.947	0	1	1283800			79298	37958	55377	55469	87508	87508					0.07307411740180214
TLGECHLQ	8	Unmodified	_TLGECHLQ_					0	0	0		ENST00000249014.4_2_22:37962162-37962273:+|nuORF	ENST00000249014.4_2_22:37962162-37962273:+|nuORF	ENST00000249014.4_2_22:37962162-37962273:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7608947753906	2	450.715827	899.417102	-0.24539	-0.0001106	2.6244	0.0011828	2.379	0.0010722	450.71695058098663	38.85	0.52124	38.85	38.555	39.076	0					26	13	3	0	0	0	0.027866	1	3259	3259		12.207	0	1	584320			79299	11337	55378	55470	87509	87509					-0.03663007422449027
TLGESAQHW	9	Unmodified	_TLGESAQHW_					0	0	0			REV__ENSG00000182264|ENST00000332955|IZUMO1	REV__ENSG00000182264|ENST00000332955|IZUMO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2902221679688	2	514.743431	1027.47231	-0.28529	-0.00014685	0.13306	6.8493E-05	-0.15223	-7.8361E-05	514.7434099436327	70.287	0.45178	70.019	69.746	70.198	-0.26725					23	10	3	0	0	0	0.024261	1	8189	8189		45.972	0	1	269470	+		79300	27464	55379	55471	87510	87510					-0.04032877630334042
TLGFKQKIQ	9	Unmodified	_TLGFKQKIQ_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8150634765625	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.77768	1	10629	10629		40.778	0	1	4853400	+		79301	23826	55380	55472	87511	87511					0.09498308748334239
TLGGLGPPL	9	Unmodified	_TLGGLGPPL_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.74627685546875	2	412.747453	823.480354	-0.12119	-5.0022E-05	-2.8672	-0.0011834	-2.9884	-0.0012335	412.74615085792476	84.367	2.1052	84.393	83.555	85.66	0.026558					110	49	4	0	0	0	0.90698	1	10513	10513		31.955	1.4512	1	6096900	+		79302	26560	55381	55473	87512	87512					0.06155301357091503
TLGLSSKPIV	10	Unmodified	_TLGLSSKPIV_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.8419494628906	2	507.813325	1013.6121	-0.59865	-0.000304	0.28406	0.00014425	-0.31459	-0.00015975	507.81344882271105	65.933	0.85747	65.681	65.148	66.006	-0.25112					35	20	3	0	0	0	0.03519	1	7518	7518		56.721	1.9447	1	369720			79303	1633	55382	55474	87513	87513					0.1058348665419544
TLGLTALRSD	10	Unmodified	_TLGLTALRSD_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3035278320312	2	523.795663	1045.57677	-0.06806	-3.565E-05	-1.1511	-0.00060294	-1.2192	-0.00063859	523.7954028642649	86.864	0.54833	86.819	86.51	87.058	-0.045105					29	12	3	0	0	0	0.03519	1	10857	10857		18.262	6.0552	1	3277900			79304	4379	55383	55475	87514	87514					0.055808241263775926
TLGMKIVIK	9	Unmodified	_TLGMKIVIK_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.75592041015625	2	501.822638	1001.63072	0.089892	4.511E-05	2.8456	0.001428	2.9355	0.0014731	502.32304464670216	47.508	0.18711	47.239	47.163	47.35	-0.26939					5	4	2	0	0	0	0.024539	1	4630	4630		20.947	14.634	1	47272			79305	2903	55384	55476	87515	87515					0.12997325024400652
TLGNLLLALS	10	Unmodified	_TLGNLLLALS_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.842041015625	2	507.813325	1013.6121	-0.17401	-8.8363E-05	-0.11175	-5.6747E-05	-0.28576	-0.00014511	507.8131990408084	65.922	0.94147	65.68	65.126	66.068	-0.24145					36	22	3	0	0	0	0.03519	1	7527	7527		29.17	10.067	1	324560	+		79306	26442	55385	55477	87516	87516					0.10583486654184071
TLGNLLLALS	10	Unmodified	_TLGNLLLALS_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.8414001464844	2	507.813325	1013.6121	-1.0466	-0.00053147	0.60138	0.00030539	-0.4452	-0.00022608	507.81363462988594	65.918	0.98444	65.705	65.052	66.037	-0.21327					36	23	2	0	0	0	0.03519	1	7531	7531		27.047	7.0505	1	306460	+		79307	26442	55385	55477	87517	87517					0.10583486654184071
TLGNVLVTV	9	Unmodified	_TLGNVLVTV_					0	0	0		EXOC1|p.R645S|1|0.19|ENSG00000090989|chr4:55893762-55893762|G/C|missense_variant;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1	REV__ENSG00000170927|ENST00000371117|PKHD1;ENSG00000090989|ENST00000381295|EXOC1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2791442871094	2	458.279118	914.543683	0.15693	7.1917E-05	0.010517	4.8196E-06	0.16745	7.6737E-05	458.2790637572889	74.864	1.3009	74.874	74.523	75.824	0.010376					47	33	2	0	0	0	0.01452	1	9099	9099		186.09	33.456	1	1516300			79308	26520;1946	55386	55478	87518	87518					0.08299242074349422
TLGNVLVTV	9	Unmodified	_TLGNVLVTV_					0	0	0		EXOC1|p.R645S|1|0.19|ENSG00000090989|chr4:55893762-55893762|G/C|missense_variant;ENST00000511971.5_1_4:56749994-56766742:+|nuORF;ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1	REV__ENSG00000170927|ENST00000371117|PKHD1;ENSG00000090989|ENST00000381295|EXOC1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.27899169921875	2	458.279118	914.543683	-0.18265	-8.3703E-05	0.43251	0.00019821	0.24986	0.00011451	458.2792011190283	75.045	1.1787	74.782	74.489	75.668	-0.26326					43	28	2	0	0	0	0.01452	3	8865	8865;8877;8889		201.49	48.854	1	1502000			79309	26520;1946	55386	55478	87519;87520;87521	87519					0.08299242074349422
TLGQVVRR	8	Unmodified	_TLGQVVRR_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.77752685546875	2	464.787976	927.561398	-0.49979	-0.0002323	0.016406	7.6255E-06	-0.48338	-0.00022467	464.78959166992263	81.355	0.4149	81.212	80.984	81.399	-0.14248					12	9	2	0	0	0	0.027866	1	9734	9734		35.618	14.671	1	46596			79310	2635	55387	55479	87522	87522					0.0947200211985546
TLGRDVEEL	9	Unmodified	_TLGRDVEEL_					0	0	0		ENST00000584205.5_1_17:17931933-17942433:-|nuORF	ENST00000584205.5_1_17:17931933-17942433:-|nuORF	ENST00000584205.5_1_17:17931933-17942433:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.27099609375	2	516.272021	1030.52949	-0.080851	-4.1741E-05	-0.43943	-0.00022686	-0.52028	-0.0002686	516.2717183881178	49.149	0.90163	48.967	48.667	49.569	-0.18206					52	23	4	0	0	0	0.31037	1	4913	4913		74.255	4.6274	1	3489800			79311	17202	55388	55480	87523	87523					0.01544544855391905
TLGTQLWLE	9	Unmodified	_TLGTQLWLE_					0	0	0		ENST00000476141.1_1_X:48399826-48417478:+|nuORF	ENST00000476141.1_1_X:48399826-48417478:+|nuORF	ENST00000476141.1_1_X:48399826-48417478:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.7838134765625	2	530.787307	1059.56006	-0.68752	-0.00036493	-3.2261	-0.0017124	-3.9136	-0.0020773	530.7853996784322	53.253	0.87894	53.349	53.092	53.971	0.095669					76	24	4	0	0	0	0.29158	1	5737	5737		76.774	2.5191	1	4615300			79312	15081	55389	55481	87524	87524					0.03266323240427482
TLGVTDGCGPS	11	Unmodified	_TLGVTDGCGPS_					0	0	0			REV__ENST00000252593.6_1_19:17513911-17513998:-|nuORF	REV__ENST00000252593.6_1_19:17513911-17513998:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7381896972656	2	503.729132	1005.44371	1.4725	0.00074175	-4.3224	-0.0021773	-2.8499	-0.0014356	503.7266543792091	36.648	0.36383	36.446	36.128	36.492	-0.20223					10	8	2	0	0	0	0.024768	1	2851	2851		31.53	4.8369	1	53575	+		79313	29510	55390	55482	87525	87525					-0.05879363321764686
TLGWHEISTG	10	Unmodified	_TLGWHEISTG_					0	0	0		ENST00000563518.5_1_15:41796196-41797203:-|nuORF	ENST00000563518.5_1_15:41796196-41797203:-|nuORF	ENST00000563518.5_1_15:41796196-41797203:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3238525390625	2	550.772188	1099.52982	0.048959	2.6965E-05	-3.9436	-0.002172	-3.8947	-0.0021451	550.7725986671824	50.403	0.41993	50.123	49.839	50.258	-0.27977					13	10	2	0	0	0	0.03519	1	5117	5117		15.642	0	1	99995			79314	16870	55391	55483	87526	87526					-0.015960354247681607
TLGYICVFS	9	Unmodified	_TLGYICVFS_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7703857421875	2	501.751879	1001.4892	-0.58028	-0.00029116	-1.0343	-0.00051897	-1.6146	-0.00081013	502.25108691487833	39.413	0.1517	39.19	39.073	39.225	-0.22311					5	3	2	0	0	0	0.024506	1	3327	3327		38.806	26.599	1	62476	+		79315	26531	55392	55484	87527	87527					-0.011480930687412183
TLHALCNLLV	10	Unmodified	_TLHALCNLLV_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63683420-63684509:+|nuORF;ENST00000554011.5_1_14:57675329-57698504:-|nuORF	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.7872924804688	2	548.812802	1095.61105	-0.58531	-0.00032123	-2.9272	-0.0016065	-3.5125	-0.0019277	548.8109537372155	66.106	0.86366	65.833	65.396	66.26	-0.27282					52	22	3	0	0	0	0.03519	1	7879	7879		21.96	0	1	438690			79316	1423	55393	55485	87528	87528					0.06706949013619123
TLHDAHGNPLL	11	Unmodified	_TLHDAHGNPLL_					0	0	0		nc|ENSG00000037280|P35916-3|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;ENST00000507059.5_1_5:180043993-180056331:-|nuORF	nc|ENSG00000037280|P35916-3|FLT4	nc|ENSG00000037280|P35916-3|FLT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	594.3106689453125	2	594.312012	1186.60947	-0.38791	-0.00023054	-1.975	-0.0011738	-2.3629	-0.0014043	594.3106853917436	61.609	0.70603	61.68	61.355	62.061	0.071129					58	18	4	0	0	0	0.72712	1	7050	7050		62.107	1.1355	1	3664700			79317	1045	55394	55486	87529	87529					0.023630312492286976
TLHFDDALI	9	Unmodified	_TLHFDDALI_					0	0	0			REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	REV__nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	522.771657	1043.52876	0.50744	0.00026528	-0.44412	-0.00023217	0.063326	3.3105E-05	522.7684822517842	85.574	1.5502	85.436	84.195	85.745	-0.13752					68	36	5	0	0	0	0.023775	1	10304	10304		38.806	0	1	303880	+		79318	25152	55395	55487	87530	87530					0.008737502063240754
TLHHLSMMP	9	Unmodified	_TLHHLSMMP_					0	0	0			REV__ENSG00000196136|ENST00000393078|SERPINA3	REV__ENSG00000196136|ENST00000393078|SERPINA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8208618164062	2	533.762255	1065.50996	-0.7466	-0.00039851	3.9002	0.0020818	3.1536	0.0016832	533.7643140735593	69.008	1.2351	69.008	68.68	69.915	0					54	31	3	0	0	0	0.024381	1	8404	8404		55.504	6.0627	1	808710	+		79319	28132	55396	55488	87531	87531					-0.020178259607291693
TLHIMWAGQP	10	Unmodified	_TLHIMWAGQP_					0	0	0		ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.2933959960938	2	577.294776	1152.575	-0.076051	-4.3904E-05	-1.9897	-0.0011486	-2.0657	-0.0011925	577.7934893238172	99.229	1.0953	99.239	98.564	99.66	0.010231					31	24	2	0	0	0	0.03519	1	12635	12635		31.53	13.268	1	63195			79320	4741	55397	55489	87532	87532					0.004814918367628707
TLHLIVRGL	9	Unmodified	_TLHLIVRGL_					0	0	0			REV__CADPS|p.P484L|1|0.34|ENSG00000163618|chr3:62585311-62585311|G/A|missense_variant	REV__CADPS|p.P484L|1|0.34|ENSG00000163618|chr3:62585311-62585311|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.327392578125	2	511.329476	1020.6444	-1.0623	-0.00054317	-3.3867	-0.0017317	-4.4489	-0.0022749	511.32756312353075	106	0.52655	105.86	105.43	105.96	-0.1328					34	21	2	0	0	0	0.98697	1	13176	13176		23.042	4.7181	1	76355	+		79321	19236	55398	55490	87533	87533					0.13490318847846083
TLHLIVRGL	9	Unmodified	_TLHLIVRGL_					0	0	0			REV__CADPS|p.P484L|1|0.34|ENSG00000163618|chr3:62585311-62585311|G/A|missense_variant	REV__CADPS|p.P484L|1|0.34|ENSG00000163618|chr3:62585311-62585311|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	511.329476	1020.6444	-1.0623	-0.00054317	-3.3867	-0.0017317	-4.4489	-0.0022749	511.32756312353075	106	0.52655	105.86	105.43	105.96	-0.1328	0.035983	0.00070658	NaN	23.042	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76355	+		79322	19236	55398	55490							0.13490318847846083
TLHLIVRGL	9	Unmodified	_TLHLIVRGL_					0	0	0			REV__CADPS|p.P484L|1|0.34|ENSG00000163618|chr3:62585311-62585311|G/A|missense_variant	REV__CADPS|p.P484L|1|0.34|ENSG00000163618|chr3:62585311-62585311|G/A|missense_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	511.329476	1020.6444	0.43296	0.00022139	-4.9994	-0.0025564	-4.5665	-0.002335	511.32677913430695	105.95	0.38531	105.79	105.49	105.87	-0.16132	-0.035983	-0.00094274	NaN	23.042	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76223	+		79323	19236	55398	55490							0.13490318847846083
TLHNRDPDN	9	Unmodified	_TLHNRDPDN_					0	0	0			REV__ENSG00000172270|ENST00000333511|BSG	REV__ENSG00000172270|ENST00000333511|BSG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	541.254694	1080.49483	-0.96648	-0.00052311	-0.55166	-0.00029859	-1.5181	-0.0008217	541.2550883991437	59.67	0.10632	59.756	59.692	59.798	0.085682					4	2	2	0	0	0	0.024541	1	6742	6742		17.468	0	1	40576	+		79324	26655	55399	55491	87534	87534					-0.0421927823272199
TLHQFNYCER	10	Unmodified	_TLHQFNYCER_					0	0	0		nc|ENSG00000102468|P28223-2|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.2735595703125	3	437.536395	1309.58736	0.16946	7.4146E-05	1.6215	0.00070948	1.791	0.00078363	437.5370415295708	52.883	0.26692	52.735	52.607	52.873	-0.14723					8	6	2	0	0	0	0.03519	1	5678	5678		19.263	3.2559	1	45733			79325	18136	55400	55492	87535	87535					-0.05505516490848095
TLHTHLKLG	9	Unmodified	_TLHTHLKLG_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2562561035156	2	510.303458	1018.59236	-0.96489	-0.00049239	0.43287	0.0002209	-0.53202	-0.00027149	510.30319185173465	38.247	0.78788	38.165	37.743	38.531	-0.082516					47	21	4	0	0	0	0.024487	1	3115	3115		24.203	15.971	1	769270			79326	13377	55401	55493	87536	87536					0.08381155434096854
TLHVIPRSS	9	Unmodified	_TLHVIPRSS_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.29119873046875	2	505.293091	1008.57163	-0.46098	-0.00023293	-2.5237	-0.0012752	-2.9847	-0.0015081	505.29155691644564	96.328	1.475	96.171	95.794	97.269	-0.15646					67	33	3	0	0	0	1.0019	1	11901	11901		19.997	1.6724	1	710750	+		79327	24202	55402	55494	87537	87537					0.0676856505442629
TLHYEMWL	8	Unmodified	_TLHYEMWL_					0	0	0			REV__nc|ENSG00000132600|Q9NVM4-3|PRMT7;REV__ENST00000568975.5_1_16:68386292-68391124:+|nuORF	REV__nc|ENSG00000132600|Q9NVM4-3|PRMT7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.816650390625	2	546.762778	1091.511	-0.42524	-0.0002325	3.998	0.0021859	3.5727	0.0019534	546.7647996096333	53.978	0.96063	54.076	53.808	54.769	0.098015					54	27	3	0	0	0	0.027866	1	5863	5863		13.775	2.9098	1	1164400	+		79328	23296;35359	55403	55495	87538	87538					-0.03109288320183623
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	585.3613891601562	2	585.360639	1168.70673	-1.0038	-0.00058757	1.3247	0.00077546	0.32097	0.00018788	585.3613452966686	76.773	0.77843	76.773	76.473	77.252	0					27	18	3	0	0	0	0.0030965	1	9482	9482		148.69	65.94	1	710890			79329	1675;10073	55404	55496	87539	87539					0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	585.3619384765625	2	585.360639	1168.70673	-1.5031	-0.00087984	1.7175	0.0010054	0.21446	0.00012554	585.3614662142608	77.006	0.74444	76.778	76.36	77.105	-0.22843					41	17	4	0	0	0	0.15312	2	9457	9457;9474		104.01	43.895	1	725870			79330	1675;10073	55404	55496	87540;87541	87540					0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	585.36083984375	2	585.360639	1168.70673	0.76976	0.00045059	-0.38899	-0.0002277	0.38077	0.00022289	585.3601897893434	76.764	0.61311	76.777	76.532	77.145	0.013504					29	14	3	0	0	0	0.014736	1	9405	9405		133.99	43.393	1	585900			79331	1675;10073	55404	55496	87542	87542					0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.360639	1168.70673	0.092989	5.4432E-05	-0.4393	-0.00025715	-0.34631	-0.00020272	585.3602990646535	76.928	0.46338	76.66	76.424	76.887	-0.26806	-0.052568	-0.00083606	NaN	148.69	29	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490800			79332	1675;10073	55404	55496							0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.360639	1168.70673	-0.35606	-0.00020843	0.0057818	3.3844E-06	-0.35028	-0.00020504	585.3605099457135	76.915	0.50694	76.663	76.356	76.863	-0.25163	-0.049153	-0.00031499	NaN	148.69	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500540			79333	1675;10073	55404	55496							0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;DNM2|p.P778Lfs*7|1|0.39|ENSG00000079805|chr19:10830163-10830163|C/-|frameshift_variant;DNM2|p.L793*|1|0.06|ENSG00000079805|chr19:10830206-10830206|C/-|frameshift_variant;DNM2|p.M580Qfs*27|1|0.24|ENSG00000079805|chr19:10820044-10820048|TCATG/-|frameshift_variant;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000197959|Q9UQ16-5|DNM3	nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.360639	1168.70673	-0.83386	-0.00048811	0.43892	0.00025692	-0.39494	-0.00023118	585.3606469659454	76.792	0.54703	76.624	76.352	76.899	-0.16853	-0.088862	0.00019209	NaN	148.69	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417090			79334	1675;10073	55404	55496							0.12912000405481194
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.3648071289062	2	599.363713	1196.71287	-0.5142	-0.00030819	0.74122	0.00044426	0.22702	0.00013607	599.3641476087199	77.354	0.62938	77.192	77.024	77.653	-0.16196					24	14	3	0	0	0	0.3697	1	9196	9196		84.817	0	1	420690			79335	6611	55405	55497	87543	87543					0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	599.363713	1196.71287	-1.178	-0.00070605	1.2521	0.00075047	0.074106	4.4417E-05	599.3643190343104	77.353	0.87745	77.353	77.04	77.918	0	0.068702	0.00065081	NaN	84.817	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762120			79336	6611	55405	55497							0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	599.363713	1196.71287	-0.42421	-0.00025426	0.40329	0.00024172	-0.020919	-1.2538E-05	599.3638623593397	77.516	0.96057	77.305	76.954	77.914	-0.21087	0.020439	-0.00036669	NaN	84.817	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	730110			79337	6611	55405	55497							0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	599.363713	1196.71287	-1.0233	-0.00061334	0.95525	0.00057254	-0.068061	-4.0793E-05	599.364149867497	77.342	0.92462	77.355	77.104	78.029	0.013504	0.070985	0.00029496	NaN	84.817	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	737950			79338	6611	55405	55497							0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	599.363713	1196.71287	-0.16232	-9.7286E-05	0.44654	0.00026764	0.28423	0.00017035	599.3639108059695	77.514	0.60942	77.252	77.003	77.612	-0.26202	-0.032507	-0.00031484	NaN	84.817	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497090			79339	6611	55405	55497							0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	599.363713	1196.71287	0.37039	0.000222	-0.23778	-0.00014251	0.13261	7.9482E-05	599.363444264278	77.491	0.85677	77.249	77.009	77.866	-0.24232	-0.03562	-0.0011352	NaN	84.817	33	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454370			79340	6611	55405	55497							0.1223851863701384
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7837219238281	2	486.784233	971.553913	-0.062141	-3.0249E-05	-0.23072	-0.00011231	-0.29286	-0.00014256	486.7840873389947	100.84	2.4226	100.84	100.31	102.73	0					163	55	6	0	0	0	0.013805	8	12877	12868;12877;12888;12900;12912;12924;12938;12950		183.89	86.422	1	21803000			79341	2270	55406	55498	87544;87545;87546;87547;87548;87549;87550;87551	87545					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.784423828125	2	486.784233	971.553913	-0.20217	-9.8412E-05	-0.033551	-1.6332E-05	-0.23572	-0.00011474	486.78418384241957	100.88	2.281	100.89	100.39	102.67	0.0090332					143	53	5	0	0	0	0.013805	8	12852	12832;12840;12852;12864;12882;12896;12909;12921		183.89	86.422	1	16375000			79342	2270	55406	55498	87552;87553;87554;87555;87556;87557;87558;87559	87554					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.78387451171875	2	486.784233	971.553913	-0.15567	-7.5778E-05	-0.21525	-0.00010478	-0.37092	-0.00018056	486.7841069020933	100.86	2.2818	100.86	100.47	102.76	-0.0054474					148	53	5	0	0	0	0.014251	8	12814	12797;12805;12814;12826;12838;12850;12863;12876		200.96	103.48	1	21094000			79343	2270	55406	55498	87560;87561;87562;87563;87564;87565;87566;87567	87562					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7839050292969	2	486.784233	971.553913	0.40756	0.0001984	-0.6392	-0.00031115	-0.23163	-0.00011276	486.78386793825655	100.84	2.6156	100.7	100.13	102.74	-0.13364					201	64	5	0	0	0	0.013805	8	12520	12476;12485;12493;12502;12510;12520;12538;12550		200.96	106.95	1	13798000			79344	2270	55406	55498	87568;87569;87570;87571;87572;87573;87574;87575	87573					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.78399658203125	2	486.784233	971.553913	0.5255	0.00025581	-0.72946	-0.00035509	-0.20396	-9.9283E-05	486.7838211550781	100.82	2.4065	100.7	100.27	102.68	-0.12576					154	60	5	0	0	0	0.013805	8	12511	12487;12497;12504;12511;12521;12551;12614;12630		183.89	98.535	1	16049000			79345	2270	55406	55498	87576;87577;87578;87579;87580;87581;87582;87583	87579					0.06699805008918247
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7845764160156	2	486.784233	971.553913	0.35347	0.00017206	-0.60482	-0.00029442	-0.25135	-0.00012235	486.78388065302573	100.91	2.3972	100.74	100.32	102.72	-0.17178					119	58	3	0	0	0	0.013805	10	12496	12479;12488;12496;12503;12510;12522;12532;12575;12587;12602		200.96	94.541	1	13095000			79346	2270	55406	55498	87584;87585;87586;87587;87588;87589;87590;87591;87592;87593	87586					0.06699805008918247
TLIEELKTL	9	Unmodified	_TLIEELKTL_					0	0	0		ENSG00000123268|ENST00000262053|ATF1;nc|ENSG00000123268|P18846-2|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.3182983398438	2	530.31844	1058.62233	-0.75471	-0.00040024	0.6492	0.00034428	-0.10551	-5.5954E-05	530.3187216110081	72.761	0.50121	72.761	72.533	73.034	0					31	11	3	0	0	0	0.056725	1	8867	8867		126.24	49.468	1	757930			79347	3967	55407	55499	87594	87594					0.09536049588768947
TLIEELKTL	9	Unmodified	_TLIEELKTL_					0	0	0		ENSG00000123268|ENST00000262053|ATF1;nc|ENSG00000123268|P18846-2|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.3184814453125	2	530.31844	1058.62233	-0.061872	-3.2812E-05	-0.038274	-2.0297E-05	-0.10015	-5.3109E-05	530.3183261995077	73.093	0.61256	72.811	72.506	73.119	-0.28124					35	14	3	0	0	0	0.013924	2	8878	8878;8891		167.23	71.414	1	822870			79348	3967	55407	55499	87595;87596	87595					0.09536049588768947
TLIEELKTL	9	Unmodified	_TLIEELKTL_					0	0	0		ENSG00000123268|ENST00000262053|ATF1;nc|ENSG00000123268|P18846-2|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.31844	1058.62233	0.13561	7.1919E-05	-0.035246	-1.8691E-05	0.10037	5.3228E-05	530.3182612452641	72.791	0.5381	72.801	72.489	73.027	0.0096512	0.063557	-0.00021634	NaN	167.23	33	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782750			79349	3967	55407	55499							0.09536049588768947
TLIEELKTL	9	Unmodified	_TLIEELKTL_					0	0	0		ENSG00000123268|ENST00000262053|ATF1;nc|ENSG00000123268|P18846-2|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.31844	1058.62233	-0.46754	-0.00024795	-0.056156	-2.978E-05	-0.5237	-0.00027773	530.3181812325396	72.758	0.67493	72.56	72.12	72.795	-0.19811	-0.17684	-0.00023852	NaN	167.23	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255790			79350	3967	55407	55499							0.09536049588768947
TLIEEMLYL	9	Unmodified	_TLIEEMLYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.7984008789062	2	562.799026	1123.5835	0.37562	0.0002114	-0.61835	-0.00034801	-0.24273	-0.00013661	562.7985569630558	101.74	0.79967	101.61	101.27	102.07	-0.13156					61	18	4	0	0	0	0.31247	1	12625	12625		73.975	24.533	1	333420			79351	981	55408	55500	87597	87597					0.026650009627246618
TLIEEMLYL	9	Unmodified	_TLIEEMLYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.7975463867188	2	562.799026	1123.5835	0.27071	0.00015236	-0.60576	-0.00034092	-0.33504	-0.00018856	562.7985053857362	101.74	0.91241	101.61	101.19	102.11	-0.12576					55	22	4	0	0	0	0.17455	2	12654	12644;12654		94.006	22.629	1	342750			79352	981	55408	55500	87598;87599	87599					0.026650009627246618
TLIEEMLYL	9	Unmodified	_TLIEEMLYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.798583984375	2	562.799026	1123.5835	0.024485	1.378E-05	-0.30646	-0.00017247	-0.28197	-0.00015869	562.7986191990093	101.8	0.97726	101.63	101.15	102.12	-0.17178					63	22	4	0	0	0	0.52323	1	12631	12631		57.811	4.4598	1	282750			79353	981	55408	55500	87600	87600					0.026650009627246618
TLIEEMLYL	9	Unmodified	_TLIEEMLYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	562.799026	1123.5835	-0.36495	-0.00020539	-0.14147	-7.9621E-05	-0.50642	-0.00028502	562.7988052074825	101.77	1.2519	101.77	101.25	102.5	0.0073471	0.064101	0.0003099	NaN	94.006	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208630			79354	981	55408	55500							0.026650009627246618
TLIEEMLYL	9	Unmodified	_TLIEEMLYL_					0	0	0		nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	562.799026	1123.5835	-0.14798	-8.3282E-05	-0.55447	-0.00031205	-0.70245	-0.00039534	562.7986637354841	101.81	1.0559	101.81	101.27	102.33	-0.0054474	0.097582	-0.00015496	NaN	94.006	58	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172810			79355	981	55408	55500							0.026650009627246618
TLIEKREKHSL	11	Unmodified	_TLIEKREKHSL_					0	0	0			REV__ENSG00000196169|ENST00000389916|KIF19	REV__ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.9328918457031	3	451.933143	1352.7776	0.91985	0.00041571	-2.0117	-0.00090914	-1.0918	-0.00049343	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0471	1	12193	12193		25.892	6.629	1	1435400	+		79356	28137	55409	55501	87601	87601					0.11532093443042868
TLIELCPPK	9	Unmodified	_TLIELCPPK_					0	0	0			REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.31573486328125	2	507.288628	1012.5627	-0.48621	-0.00024665	-2.5721	-0.0013048	-3.0583	-0.0015515	507.28849220753006	68.88	0.3391	68.88	68.717	69.056	0					11	8	2	0	0	0	0.024205	1	8260	8260		63.306	7.8021	1	257440	+		79357	22493	55410	55502	87602	87602					0.05692455373730354
TLIEQMETY	9	Unmodified	_TLIEQMETY_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2664794921875	2	564.26809	1126.52163	-0.0093432	-5.2721E-06	-2.9745	-0.0016784	-2.9839	-0.0016837	564.2663254149563	76.581	0.91814	76.313	76.008	76.927	-0.26806					49	21	4	0	0	0	0.27161	1	9104	9104		79.451	0	1	3573600			79358	5771	55411	55503	87603	87603					-0.03657350456387576
TLIFIIFY	8	Unmodified	_TLIFIIFY_					0	0	0		ENST00000484228.1_1_1:205760663-205764640:-|nuORF;ENST00000468057.5_1_1:205760663-205770562:-|nuORF;ENSG00000133065|ENST00000367137|SLC41A1	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.27734375	2	515.304604	1028.59466	-0.04348	-2.2405E-05	2.3296	0.0012004	2.2861	0.001178	515.3058370270134	46.209	0.58591	46.113	45.887	46.473	-0.096649					22	15	2	0	0	0	0.027866	1	4406	4406		28.254	0	1	372050			79359	4677	55412	55504	87604	87604					0.0815019111919355
TLIGFSFTPT	10	Unmodified	_TLIGFSFTPT_					0	0	0			REV__ENSG00000206069|ENST00000640159|LHFPL7	REV__ENSG00000206069|ENST00000640159|LHFPL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2792358398438	2	542.289682	1082.56481	-0.52096	-0.00028251	4.2893	0.0023261	3.7684	0.0020435	542.2920374612553	63.679	0.18009	63.428	63.3	63.48	-0.25141					6	4	2	0	0	0	0.03519	1	7427	7427		42.396	11.892	1	80989	+		79360	28700	55413	55505	87605	87605					0.026832073831883463
TLIGFSFTPT	10	Unmodified	_TLIGFSFTPT_					0	0	0			REV__ENSG00000206069|ENST00000640159|LHFPL7	REV__ENSG00000206069|ENST00000640159|LHFPL7	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.289682	1082.56481	-0.44262	-0.00024003	4.6013	0.0024953	4.1587	0.0022552	542.2934256102167	63.318	0.76066	63.135	62.704	63.465	-0.18386	-0.10673	-0.00040321	NaN	42.396	21	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243270	+		79361	28700	55413	55505							0.026832073831883463
TLIGFSFTPT	10	Unmodified	_TLIGFSFTPT_					0	0	0			REV__ENSG00000206069|ENST00000640159|LHFPL7	REV__ENSG00000206069|ENST00000640159|LHFPL7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	542.289682	1082.56481	-0.42842	-0.00023233	6.2071	0.003366	5.7786	0.0031337	542.7924058572927	63.42	0.4346	63.162	62.917	63.352	-0.25824	-0.07971	0.0013383	NaN	42.396	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170670	+		79362	28700	55413	55505							0.026832073831883463
TLIIVLSSI	9	Unmodified	_TLIIVLSSI_					0	0	0			REV__ENSG00000186886|ENST00000641440|OR5D3P	REV__ENSG00000186886|ENST00000641440|OR5D3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7843933105469	2	479.812793	957.611034	0.84446	0.00040518	-0.9866	-0.00047338	-0.14214	-6.8199E-05	479.8121453575501	96.352	1.2111	96.359	96.068	97.279	0.0065002					40	27	3	0	0	0	0.02435	1	12324	12324		51.335	0	1	203060	+		79363	27892	55414	55506	87606	87606					0.13053272285276307
TLIKIIDPN	9	Unmodified	_TLIKIIDPN_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2688598632812	2	513.813325	1025.6121	-1.1638	-0.00059798	1.4716	0.00075613	0.30781	0.00015816	513.8134592522897	79.943	0.29665	79.771	79.525	79.822	-0.17226					9	6	2	0	0	0	0.024307	1	9861	9861		63.534	0	1	41714			79364	8398	55415	55507	87607	87607					0.10031486654202126
TLIKMKLV	8	Unmodified	_TLIKMKLV_					0	0	0			REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF	REV__ENST00000231061.8_1_5:151042943-151043009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7557373046875	2	473.311906	944.60926	-0.90235	-0.00042709	-2.8532	-0.0013505	-3.7556	-0.0017775	473.310417570594	43.295	0.7624	43.069	42.793	43.555	-0.22597					52	20	4	0	0	0	0.027866	1	3905	3905		25.45	1.2474	1	2516900	+		79365	29409	55416	55508	87608	87608					0.1347393999568567
TLIKPDRDG	9	Unmodified	_TLIKPDRDG_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3160400390625	2	507.782556	1013.55056	-0.055121	-2.799E-05	3.8991	0.0019799	3.844	0.0019519	507.78483211925675	68.841	0.40897	68.856	68.644	69.053	0.015129					14	10	2	0	0	0	0.024418	1	8174	8174		37.812	3.639	1	119970	+		79366	36798	55417	55509	87609	87609					0.04432554954905754
TLIKYIED	8	Unmodified	_TLIKYIED_					0	0	0		ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.7762145996094	2	497.776408	993.538263	0.38742	0.00019285	-3.2812	-0.0016333	-2.8937	-0.0014404	497.7747674784176	100.81	1.1712	100.67	100.46	101.63	-0.13364					54	28	3	0	0	0	0.94517	1	12495	12495		45.952	1.8352	1	642740			79367	5999	55418	55510	87610	87610					0.04123518491849154
TLILLLGGPLA	11	Unmodified	_TLILLLGGPLA_					0	0	0		ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8319091796875	2	540.854993	1079.69543	-1.5001	-0.00081131	1.1871	0.00064203	-0.31298	-0.00016928	540.8558024360414	75.212	0.19321	75.212	75.076	75.269	0					7	4	2	0	0	0	0.024743	1	9220	9220		35.618	0	1	187380			79368	5715	55419	55511	87611	87611					0.15877223102074822
TLILMFAW	8	Unmodified	_TLILMFAW_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.7747497558594	2	497.775157	993.53576	0.48999	0.00024391	-0.75836	-0.00037749	-0.26837	-0.00013359	497.7747342576897	100.8	1.2787	100.67	100.4	101.68	-0.12576					63	32	3	0	0	0	0.98906	1	12546	12546		39.021	0.21535	1	770490			79369	5890	55420	55512	87612	87612					0.038733915532020546
TLILPPAS	8	Unmodified	_TLILPPAS_					0	0	0			REV__nc|ENSG00000171843|P42568-2|MLLT3	REV__nc|ENSG00000171843|P42568-2|MLLT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.2490234375	2	406.249829	810.485105	0.98045	0.00039831	-3.9728	-0.001614	-2.9924	-0.0012156	406.2483181949014	87.824	2.4545	87.789	87.194	89.648	-0.035362					215	58	6	0	0	0	1.0239	5	11025	10989;11001;11025;11049;11061		33.516	6.7195	1	123310000	+		79370	26608	55421	55513	87613;87614;87615;87616;87617	87615					0.07228185499843676
TLILPPAS	8	Unmodified	_TLILPPAS_					0	0	0			REV__nc|ENSG00000171843|P42568-2|MLLT3	REV__nc|ENSG00000171843|P42568-2|MLLT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.2488708496094	2	406.249829	810.485105	1.6545	0.00067215	-4.4007	-0.0017878	-2.7461	-0.0011156	406.24794763509226	110.25	0.53743	110.26	110.09	110.62	0.0059204					36	14	3	0	0	0	1.0574	1	13894	13894		20.482	1.1219	1	369610	+		79371	26608	55421	55513	87618	87618					0.07228185499843676
TLILPPAS	8	Unmodified	_TLILPPAS_					0	0	0			REV__nc|ENSG00000171843|P42568-2|MLLT3	REV__nc|ENSG00000171843|P42568-2|MLLT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2487487792969	2	406.249829	810.485105	0.91381	0.00037124	-4.0137	-0.0016306	-3.0999	-0.0012593	406.2483027871782	87.943	2.4026	87.806	87.262	89.665	-0.13613					185	57	6	0	0	0	1.0574	2	10707	10707;10719		26.796	6.3143	1	86727000	+		79372	26608	55421	55513	87619;87620	87619					0.07228185499843676
TLILRKNSL	9	Unmodified	_TLILRKNSL_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7553100585938	2	529.340041	1056.66553	-0.5522	-0.0002923	4.0106	0.002123	3.4584	0.0018307	529.3420429340634	84.685	1.6555	84.711	84.333	85.988	0.025528					76	39	2	0	0	0	0.024292	1	10646	10646		40.778	0	1	291780			79373	8916	55422	55514	87621	87621					0.13946284156691036
TLILRQNHLAS	11	Unmodified	_TLILRQNHLAS_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3692016601562	2	633.369861	1264.72517	0.31837	0.00020164	-1.5571	-0.00098625	-1.2388	-0.0007846	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	1.0292	1	11910	11910		30.318	3.6248	1	3419700			79374	5123	55423	55515	87622	87622					0.10339555100085818
TLILRQNHLAS	11	Unmodified	_TLILRQNHLAS_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3688354492188	2	633.369861	1264.72517	0.38898	0.00024637	-1.5913	-0.0010079	-1.2023	-0.00076153	633.3687642811885	93.991	2.3018	93.991	92.608	94.91	-0.00023651					162	54	4	0	0	0	1.0075	1	11914	11914		35.152	2.3396	1	3178500			79375	5123	55423	55515	87623	87623					0.10339555100085818
TLILRQNHLAS	11	Unmodified	_TLILRQNHLAS_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3694458007812	2	633.369861	1264.72517	1.1238	0.00071176	-2.2404	-0.001419	-1.1166	-0.00070723	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	1.0183	1	12159	12159		32.751	1.2207	1	8250400			79376	5123	55423	55515	87624	87624					0.10339555100085818
TLILRQNHLAS	11	Unmodified	_TLILRQNHLAS_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3687744140625	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	1.0344	2	11874	11874;11923		29.17	2.4771	1	3181800			79377	5123	55423	55515	87625;87626	87625					0.10339555100085818
TLILRQNHLAS	11	Unmodified	_TLILRQNHLAS_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.369873046875	2	633.369861	1264.72517	0.56003	0.00035471	-1.6879	-0.0010691	-1.1279	-0.00071437	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.98542	1	12262	12262		40.058	0.80534	1	8480900			79378	5123	55423	55515	87627	87627					0.10339555100085818
TLILSKRN	8	Unmodified	_TLILSKRN_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7998352050781	2	472.798009	943.581465	0.60203	0.00028464	3.9515	0.0018682	4.5535	0.0021529	472.7997418850287	77.773	1.5665	77.773	77.469	79.035	0					102	37	4	0	0	0	0.71063	1	9605	9605		66.429	7.6473	1	3021000	+		79379	21544	55424	55516	87628	87628					0.1074175305980134
TLIMQELQD	9	Unmodified	_TLIMQELQD_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.317138671875	2	545.776082	1089.53761	-0.50308	-0.00027457	-3.6249	-0.0019784	-4.128	-0.0022529	545.7736694584117	90.605	0.62695	90.616	90.198	90.825	0.011276					21	14	2	0	0	0	0.024409	1	11401	11401		41.427	6.2259	1	58225	+		79380	24099	55425	55517	87629	87629					-0.003576442195026175
TLIQQTYC	8	Unmodified	_TLIQQTYC_					0	0	0			REV__nc|ENSG00000162923|Q9H7D7-2|WDR26	REV__nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.74542236328125	2	485.239135	968.463718	-0.50991	-0.00024743	1.0754	0.00052183	0.5655	0.0002744	485.2395131227207	60.782	2.3687	60.782	59.711	62.08	0					119	63	3	0	0	0	0.027866	1	7211	7211		45.952	13.997	1	672920	+		79381	25509	55426	55518	87630	87630					-0.02177567591161278
TLISDIEAV	9	Unmodified	_TLISDIEAV_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.7658386230469	2	480.76604	959.517527	0.11552	5.5536E-05	0.66209	0.00031831	0.77761	0.00037385	480.7660037708737	79.192	1.2531	79.192	78.91	80.163	0					54	29	4	0	0	0	0.11848	1	9827	9827		106.42	32.44	1	641690			79382	2882	55427	55519	87631	87631					0.03614928112187954
TLISDIEAV	9	Unmodified	_TLISDIEAV_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7664794921875	2	480.76604	959.517527	-0.61861	-0.0002974	1.1593	0.00055736	0.54071	0.00025995	480.76642955244114	79.329	1.4195	79.156	78.861	80.28	-0.17226					57	33	3	0	0	0	0.62163	2	9810	9798;9810		51.335	5.3107	1	597170			79383	2882	55427	55519	87632;87633	87633					0.03614928112187954
TLISDIEAV	9	Unmodified	_TLISDIEAV_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7660217285156	2	480.76604	959.517527	-0.089749	-4.3148E-05	0.6155	0.00029591	0.52575	0.00025276	480.76614497353626	79.142	1.0755	79.161	78.86	79.936	0.018677					46	25	3	0	0	0	0.31247	1	9734	9734		73.975	2.679	1	954140			79384	2882	55427	55519	87634	87634					0.03614928112187954
TLISDIEAV	9	Unmodified	_TLISDIEAV_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.76604	959.517527	0.99467	0.0004782	-0.59153	-0.00028439	0.40314	0.00019382	480.7654961555882	79.342	0.6665	79.095	78.822	79.488	-0.2465	-0.011092	-0.0011636	NaN	106.42	33	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436450			79385	2882	55427	55519							0.03614928112187954
TLISDIEAV	9	Unmodified	_TLISDIEAV_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.76604	959.517527	0.12384	5.9539E-05	0.32412	0.00015583	0.44797	0.00021537	480.765917355274	79.244	0.61996	79.025	78.791	79.411	-0.21922	-0.081494	-0.00028313	NaN	106.42	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376200			79386	2882	55427	55519							0.03614928112187954
TLISDIEAV	9	Unmodified	_TLISDIEAV_					0	0	0		nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14;ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	nc|ENSG00000108219|Q8NG11-2|TSPAN14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.76604	959.517527	0.39917	0.00019191	0.12856	6.1808E-05	0.52773	0.00025371	480.7658254056307	79.16	0.87498	79.009	78.737	79.612	-0.15051	-0.097181	-0.00047117	NaN	106.42	39	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425500			79387	2882	55427	55519							0.03614928112187954
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2820129394531	2	487.281857	972.549162	-0.56477	-0.0002752	1.0265	0.00050019	0.46172	0.00022499	487.2821490714274	80.74	1.5485	80.74	80.163	81.711	0					110	37	4	0	0	0	0.013293	3	10034	10012;10022;10034		176.09	44.24	1	12549000			79388	1089	55428	55520	87635;87636;87637	87637					0.06178920866148019
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2823791503906	2	487.281857	972.549162	-0.93325	-0.00045475	1.3793	0.00067213	0.44609	0.00021737	487.28228653587087	80.935	1.4221	80.783	80.301	81.723	-0.15168					127	34	5	0	0	0	0.013293	3	10035	10001;10011;10035		205.58	35.575	1	12616000			79389	1089	55428	55520	87638;87639;87640	87640					0.06178920866148019
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2815856933594	2	487.281857	972.549162	-1.2938	-0.00063044	1.7194	0.00083782	0.4256	0.00020739	487.28245379141674	80.716	1.5033	80.74	80.234	81.737	0.023911					122	36	5	0	0	0	0.015064	4	9929	9929;9941;9953;9965		190.52	60.835	1	11847000			79390	1089	55428	55520	87641;87642;87643;87644	87641					0.06178920866148019
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2816467285156	2	487.281857	972.549162	-0.038482	-1.8752E-05	1.3423	0.00065407	1.3038	0.00063532	487.28181816635555	80.808	2.6815	80.57	80.082	82.764	-0.23784					108	63	3	0	0	0	0.014918	3	9663	9663;9674;9687		221.33	57.506	1	6614800			79391	1089	55428	55520	87645;87646;87647	87645					0.06178920866148019
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.2819519042969	2	487.281857	972.549162	0.33302	0.00016228	0.6418	0.00031274	0.97482	0.00047501	487.28154074538116	80.817	1.9101	80.611	80.092	82.002	-0.20633					105	45	4	0	0	0	0.013293	4	9687	9675;9687;9699;9763		176.09	59.183	1	6440700			79392	1089	55428	55520	87648;87649;87650;87651	87649					0.06178920866148019
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2820739746094	2	487.281857	972.549162	0.1072	5.2239E-05	0.91592	0.00044631	1.0231	0.00049855	487.28164653610247	80.699	2.1626	80.553	79.616	81.779	-0.146					115	51	5	0	0	0	0.013293	4	9661	9650;9661;9673;9685		205.58	59.183	1	5867400			79393	1089	55428	55520	87652;87653;87654;87655	87653					0.06178920866148019
TLISLVMLLP	10	Unmodified	_TLISLVMLLP_					0	0	0		GPC5|p.V564L|1|0.62|ENSG00000179399|chr13:92866410-92866410|G/C|missense_variant	GPC5|p.V564L|1|0.62|ENSG00000179399|chr13:92866410-92866410|G/C|missense_variant	GPC5|p.V564L|1|0.62|ENSG00000179399|chr13:92866410-92866410|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.3088989257812	2	550.343403	1098.67225	0.18488	0.00010175	3.019	0.0016615	3.2038	0.0017632	550.3449604566164	49.449	0.62686	49.449	49.141	49.768	0					42	16	4	0	0	0	0.03519	1	5151	5151		37.159	12.64	1	1481600			79394	17686	55429	55521	87656	87656					0.1268646099306352
TLITIWSL	8	Unmodified	_TLITIWSL_					0	0	0		ENST00000437839.5_3_2:160335148-160471999:-|nuORF	ENST00000437839.5_3_2:160335148-160471999:-|nuORF	ENST00000437839.5_3_2:160335148-160471999:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.76434326171875	2	473.784036	945.553519	-0.08929	-4.2304E-05	-2.9811	-0.0014124	-3.0704	-0.0014547	473.7824904554321	34.784	1.2912	34.762	34.095	35.386	-0.021763					42	33	2	0	0	0	0.027866	1	2639	2639		71.378	0	1	226310			79395	14300	55430	55522	87657	87657					0.07856430079709753
TLITKLIK	8	Unmodified	_TLITKLIK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2866516113281	2	465.323328	928.632104	-0.081816	-3.8071E-05	-3.1145	-0.0014492	-3.1963	-0.0014873	465.3205900212513	75.608	0.40569	75.335	75.018	75.423	-0.27266					18	9	3	0	0	0	0.027866	1	8941	8941		66.429	0	1	194260			79396	3841	55431	55523	87658	87658					0.16493282384806207
TLITRRLL	8	Unmodified	_TLITRRLL_					0	0	0			REV__ENST00000368019.5_1_1:161011186-161011605:-|nuORF	REV__ENST00000368019.5_1_1:161011186-161011605:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.2815246582031	2	493.329476	984.6444	-0.10442	-5.1512E-05	-0.25543	-0.00012601	-0.35984	-0.00017752	493.3291744521651	25.018	0.35289	24.843	24.598	24.95	-0.17484					14	7	2	0	0	0	0.027866	1	1129	1129		18.324	0	1	123590	+		79397	31041	55432	55524	87659	87659					0.15146318847837392
TLIVEVSFS	9	Unmodified	_TLIVEVSFS_					0	0	0			REV__ENSG00000011485|ENST00000012443|PPP5C;REV__ENST00000467502.6_1_19:46886456-46890886:+|nuORF	REV__ENSG00000011485|ENST00000012443|PPP5C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.7750244140625	2	497.776408	993.538263	0.38742	0.00019285	-3.2812	-0.0016333	-2.8937	-0.0014404	497.7747674784176	100.81	1.1712	100.67	100.46	101.63	-0.13364					54	28	3	0	0	0	0.59099	1	12565	12565		53.351	9.2347	1	642740	+		79398	19933;33075	55433	55525	87660	87660					0.041235184918718915
TLIVPLIAF	9	Unmodified	_TLIVPLIAF_					0	0	0			REV__ENSG00000165186|ENST00000379361|PTCHD1	REV__ENSG00000165186|ENST00000379361|PTCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.81597900390625	2	493.817879	985.621205	-0.25623	-0.00012653	-3.2311	-0.0015956	-3.4874	-0.0017221	493.81615577351283	66.825	1.3758	66.849	66.559	67.935	0.023911					71	33	3	0	0	0	0.88411	1	7874	7874		33.516	0	1	1978100	+		79399	25852	55434	55526	87661	87661					0.12781880010527402
TLIVRSPLP	9	Unmodified	_TLIVRSPLP_					0	0	0		ENST00000455976.6_1_15:48624348-48624462:+|nuORF	ENST00000455976.6_1_15:48624348-48624462:+|nuORF	ENST00000455976.6_1_15:48624348-48624462:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.315673828125	2	498.316035	994.617516	-0.24957	-0.00012436	0.11946	5.9531E-05	-0.13011	-6.4834E-05	498.3159611320506	67.4	0.95669	67.112	66.791	67.748	-0.28834					65	23	5	0	0	0	0.40179	1	8011	8011		65.803	12.452	1	5679900			79400	14592	55435	55527	87662	87662					0.11999210236660929
TLIWVKFY	8	Unmodified	_TLIWVKFY_					0	0	0			REV__ENSG00000115368|ENST00000314761|WDR75	REV__ENSG00000115368|ENST00000314761|WDR75	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2940063476562	2	535.307678	1068.6008	-0.74001	-0.00039613	-3.0704	-0.0016436	-3.8104	-0.0020397	535.3057676487555	63.208	0.80496	63.208	62.896	63.701	0					52	21	3	0	0	0	0.027866	1	7387	7387		30.504	0	1	3304700	+		79401	22199	55436	55528	87663	87663					0.06924709350710145
TLKAFNNVGEG	11	Unmodified	_TLKAFNNVGEG_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.800537109375	2	575.29857	1148.58259	-1.2174	-0.00070038	-2.8024	-0.0016122	-4.0198	-0.0023126	575.7990611028949	44.171	0.42725	43.951	43.749	44.176	-0.21938					28	11	4	0	0	0	0.024741	1	4079	4079		23.523	0	1	1000700			79402	1353	55437	55529	87664	87664					0.014239226380595937
TLKAGSLFLIY	11	Unmodified	_TLKAGSLFLIY_					0	0	0		ENST00000264954.4_1_4:7062504-7062588:-|nuORF	ENST00000264954.4_1_4:7062504-7062588:-|nuORF	ENST00000264954.4_1_4:7062504-7062588:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	613.2903442382812	2	613.363182	1224.71181	-1.3831	-0.00084834	-1.444	-0.00088568	-2.8271	-0.001734	613.3614564682921	61.034	0.27029	60.828	60.658	60.928	-0.20599					9	6	2	0	0	0	0.024818	1	6821	6821		69.628	8.6557	1	78912			79403	11577	55438	55530	87665	87665					0.10844304268130145
TLKDLDVAL	9	Unmodified	_TLKDLDVAL_					0	0	0		nc|ENSG00000203705|Q17R31-5|TATDN3;nc|ENSG00000203705|Q17R31-2|TATDN3;ENSG00000203705|ENST00000366974|TATDN3;nc|ENSG00000203705|Q17R31-3|TATDN3	nc|ENSG00000203705|Q17R31-5|TATDN3	nc|ENSG00000203705|Q17R31-5|TATDN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.2894592285156	2	494.289682	986.564812	0.43796	0.00021648	-1.2909	-0.00063809	-0.85297	-0.00042162	494.28918296895176	61.433	1.2254	61.433	60.996	62.222	0					106	32	4	0	0	0	0.34489	1	7081	7081		69.628	4.1622	1	134240000			79404	10273	55439	55531	87666	87666					0.07099207383191697
TLKDRHFW	8	Unmodified	_TLKDRHFW_					0	0	0		ENST00000528222.1_1_6:26365525-26368279:+|nuORF;ENST00000527422.5_1_6:26365525-26368411:+|nuORF;ENST00000471353.5_1_6:26440842-26444233:+|nuORF;ENST00000480110.5_1_6:26440842-26444233:+|nuORF;ENST00000532865.5_2_6:26365525-26368841:+|nuORF;ENST00000532627.5_1_6:26365525-26369063:+|nuORF;ENST00000244519.6_1_6:26440842-26444236:+|nuORF;ENST00000524459.5_1_6:26365525-26368786:+|nuORF	ENST00000528222.1_1_6:26365525-26368279:+|nuORF	ENST00000528222.1_1_6:26365525-26368279:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.3239135742188	2	551.793258	1101.57196	0.054478	3.0061E-05	0.63587	0.00035087	0.69035	0.00038093	552.2954731895396	50.219	0.86181	50.113	49.856	50.718	-0.10558					49	22	3	0	0	0	0.027866	1	5071	5071		58.782	35.739	1	506520			79405	11301	55440	55532	87667	87667					0.025239847742795973
TLKDRHFW	8	Unmodified	_TLKDRHFW_					0	0	0		ENST00000528222.1_1_6:26365525-26368279:+|nuORF;ENST00000527422.5_1_6:26365525-26368411:+|nuORF;ENST00000471353.5_1_6:26440842-26444233:+|nuORF;ENST00000480110.5_1_6:26440842-26444233:+|nuORF;ENST00000532865.5_2_6:26365525-26368841:+|nuORF;ENST00000532627.5_1_6:26365525-26369063:+|nuORF;ENST00000244519.6_1_6:26440842-26444236:+|nuORF;ENST00000524459.5_1_6:26365525-26368786:+|nuORF	ENST00000528222.1_1_6:26365525-26368279:+|nuORF	ENST00000528222.1_1_6:26365525-26368279:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.32421875	2	551.793258	1101.57196	0.13638	7.5251E-05	0.75367	0.00041587	0.89005	0.00049112	552.2955944178741	50.543	0.70555	50.263	50.031	50.737	-0.27977					42	18	3	0	0	0	0.027866	1	5104	5104		35.618	0	1	577500			79406	11301	55440	55532	87668	87668					0.025239847742795973
TLKDRNFQI	9	Unmodified	_TLKDRNFQI_					0	0	0		ENST00000532463.5_1_11:57529529-57561533:+|nuORF;ENST00000529986.5_1_11:57529333-57561533:+|nuORF	ENST00000532463.5_1_11:57529529-57561533:+|nuORF	ENST00000532463.5_1_11:57529529-57561533:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8167114257812	2	567.81693	1133.61931	-0.044236	-2.5118E-05	-0.032615	-1.8519E-05	-0.076851	-4.3637E-05	567.8168046527879	42.693	0.93708	42.58	42.281	43.218	-0.11253					71	24	4	0	0	0	0.17845	3	3863	3853;3863;3877		93.143	19.483	1	3972800			79407	16218	55441	55533	87669;87670;87671	87670					0.05784219254610434
TLKDRNFQI	9	Unmodified	_TLKDRNFQI_					0	0	0		ENST00000532463.5_1_11:57529529-57561533:+|nuORF;ENST00000529986.5_1_11:57529333-57561533:+|nuORF	ENST00000532463.5_1_11:57529529-57561533:+|nuORF	ENST00000532463.5_1_11:57529529-57561533:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.8169555664062	2	567.81693	1133.61931	-0.22814	-0.00012954	-0.041456	-2.354E-05	-0.26959	-0.00015308	567.8168119209503	42.856	0.97583	42.619	42.307	43.282	-0.23736					66	25	4	0	0	0	0.16638	3	3876	3876;3886;3899		95.815	16.346	1	4103500			79408	16218	55441	55533	87672;87673;87674	87672					0.05784219254610434
TLKDRNFQI	9	Unmodified	_TLKDRNFQI_					0	0	0		ENST00000532463.5_1_11:57529529-57561533:+|nuORF;ENST00000529986.5_1_11:57529333-57561533:+|nuORF	ENST00000532463.5_1_11:57529529-57561533:+|nuORF	ENST00000532463.5_1_11:57529529-57561533:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.8168334960938	2	567.81693	1133.61931	-0.55157	-0.00031319	0.30287	0.00017197	-0.2487	-0.00014122	567.8170291781905	42.882	0.90424	42.656	42.336	43.24	-0.22597					67	23	4	0	0	0	0.094442	3	3870	3870;3881;3894		112.41	32.698	1	4196700			79409	16218	55441	55533	87675;87676;87677	87675					0.05784219254610434
TLKEKFVI	8	Unmodified	_TLKEKFVI_					0	0	0			REV__ENST00000339094.5_1_15:85081807-85112930:-|nuORF	REV__ENST00000339094.5_1_15:85081807-85112930:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.7645568847656	2	489.305136	976.595718	-0.5894	-0.0002884	3.4033	0.0016653	2.8139	0.0013769	489.30762032307047	43.467	0.46501	43.354	43.034	43.499	-0.11253					18	12	2	0	0	0	0.027866	1	3943	3943		18.324	6.8134	1	76563	+		79410	30600	55442	55534	87678	87678					0.10648405488097978
TLKEMNTKV	9	Unmodified	_TLKEMNTKV_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.319091796875	2	532.294442	1062.57433	-0.13514	-7.1936E-05	0.78022	0.00041531	0.64508	0.00034337	532.2948206332693	104.19	0.78278	104.18	103.81	104.6	-0.0032196					25	18	2	0	0	0	0.024397	1	13266	13266		24.519	0	1	134340	+		79411	20738	55443	55535	87679	87679					0.04554652397064274
TLKEMQDVQ	9	Unmodified	_TLKEMQDVQ_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3013916015625	2	546.273706	1090.53286	-1.0866	-0.00059359	-2.0979	-0.001146	-3.1845	-0.0017396	546.2725585037192	64.979	0.48379	64.777	64.539	65.023	-0.20254					31	11	3	0	0	0	0.024427	1	7386	7386		19.997	3.5236	1	717990			79412	5942	55444	55536	87680	87680					-0.008785283622728457
TLKFTKGAG	9	Unmodified	_TLKFTKGAG_					0	0	0		ENSG00000115129|ENST00000238721|TP53I3	ENSG00000115129|ENST00000238721|TP53I3	ENSG00000115129|ENST00000238721|TP53I3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.77349853515625	2	461.77146	921.528367	0.74969	0.00034618	3.7023	0.0017096	4.452	0.0020558	461.77298981619765	102.05	0.83698	102.05	101.71	102.55	-0.0054474					44	18	4	0	0	0	0.72875	1	12979	12979		44.117	1.6423	1	1118500			79413	3410	55445	55537	87681	87681					0.06446375277153038
TLKGKLHEI	9	Unmodified	_TLKGKLHEI_					0	0	0		ENST00000455355.5_1_3:197785546-197786035:-|nuORF	ENST00000455355.5_1_3:197785546-197786035:-|nuORF	ENST00000455355.5_1_3:197785546-197786035:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.8195190429688	2	519.818941	1037.62333	0.39079	0.00020314	-0.95648	-0.0004972	-0.56569	-0.00029406	519.8185167136494	71.654	3.022	71.366	70.459	73.481	-0.28858					180	76	4	0	0	0	0.56934	1	8684	8684		54.776	0	1	29892000			79414	14576	55446	55538	87682	87682					0.10602308748298128
TLKGKSSS	8	Unmodified	_TLKGKSSS_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2328186035156	2	404.232168	806.449782	0.88841	0.00035912	-1.1234	-0.00045413	-0.23502	-9.5003E-05	404.23126867146937	81.701	1.1843	81.472	80.98	82.165	-0.2289					64	27	3	0	0	0	1.0574	1	9820	9820		19.36	1.995	1	1092000	+		79415	20775;36023	55447	55539	87683	87683					0.038815229720512434
TLKKFHIL	8	Unmodified	_TLKKFHIL_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.32086181640625	2	500.32112	998.627687	-0.27699	-0.00013858	-3.8012	-0.0019018	-4.0782	-0.0020404	500.3190133909352	25.864	0.80261	25.693	25.457	26.259	-0.17078					40	22	4	0	0	0	0.93274	1	1266	1266		47.916	0.25827	1	1326900			79416	9378	55448	55540	87684	87684					0.1283181796189865
TLKKFHIL	8	Unmodified	_TLKKFHIL_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.32112	998.627687	-0.65896	-0.00032969	-3.4808	-0.0017415	-4.1397	-0.0020712	500.31920372756167	26.143	0.51977	25.907	25.677	26.197	-0.23603	0.070923	-5.5144E-05	NaN	47.916	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1503700			79417	9378	55448	55540							0.1283181796189865
TLKKFHIL	8	Unmodified	_TLKKFHIL_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.32112	998.627687	-1.425	-0.00071295	-3.048	-0.001525	-4.4729	-0.0022379	500.3194417613472	26.072	0.90597	25.908	25.631	26.537	-0.16331	0.072397	0.00037794	NaN	47.916	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1695100			79418	9378	55448	55540							0.1283181796189865
TLKKLAERQ	9	Unmodified	_TLKKLAERQ_					0	0	0			REV__ENSG00000164794|ENST00000524391|KCNV1	REV__ENSG00000164794|ENST00000524391|KCNV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.8350830078125	2	543.835123	1085.65569	0.13967	7.5958E-05	-0.56241	-0.00030586	-0.42274	-0.0002299	543.83474092561	19.17	0.69229	19.009	18.787	19.48	-0.16079					35	13	4	0	0	0	0.77768	1	390	390		40.778	0	1	728190	+		79419	25802	55449	55541	87685	87685					0.11629096151295926
TLKKNLLH	8	Unmodified	_TLKKNLLH_					0	0	0			REV__ENST00000531489.1_1_11:34356987-34357176:-|nuORF	REV__ENST00000531489.1_1_11:34356987-34357176:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.8083190917969	2	483.808377	965.6022	-1.1767	-0.00056928	1.0237	0.00049528	-0.15296	-7.4005E-05	483.8086951202378	21.401	0.5862	21.188	20.872	21.458	-0.2128					29	11	4	0	0	0	0.94517	1	630	630		45.952	0	1	445000	+		79420	34558	55450	55542	87686	87686					0.11802343439467222
TLKKTFVL	8	Unmodified	_TLKKTFVL_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;nc|ENSG00000154122|Q9HCJ1-2|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.3076477050781	2	475.307678	948.600803	0.2081	9.8913E-05	-0.37916	-0.00018022	-0.17106	-8.1306E-05	475.30734890505624	42.709	1.0043	42.597	42.317	43.322	-0.11253					69	26	4	0	0	0	0.35998	1	3878	3878		102.77	20.468	1	1798100			79421	6383	55451	55543	87687	87687					0.1244470935072286
TLKKTFVL	8	Unmodified	_TLKKTFVL_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;nc|ENSG00000154122|Q9HCJ1-2|ANKH	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.30743408203125	2	475.307678	948.600803	-0.28341	-0.00013471	-0.0023792	-1.1309E-06	-0.28579	-0.00013584	475.3075124692004	42.846	0.97583	42.608	42.307	43.282	-0.23736					67	25	4	0	0	0	0.68164	1	3888	3888		68.787	10.005	1	1803000			79422	6383	55451	55543	87688	87688					0.1244470935072286
TLKLEPFTD	9	Unmodified	_TLKLEPFTD_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8167114257812	2	532.28714	1062.55973	0.43576	0.00023195	-0.55689	-0.00029642	-0.12113	-6.4473E-05	532.2866978589877	85.185	0.5811	85.185	84.876	85.457	0					34	13	3	0	0	0	0.024511	1	10704	10704		13.454	0	1	580870	+		79423	19939	55452	55544	87689	87689					0.030949035205594555
TLKLTVDDF	9	Unmodified	_TLKLTVDDF_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.3143920898438	2	526.28714	1050.55973	0.012784	6.7278E-06	-1.4668	-0.00077194	-1.454	-0.00076522	526.2856448878251	78.134	0.38568	77.979	77.784	78.17	-0.15591					13	8	2	0	0	0	0.024535	1	9280	9280		25.45	10.786	1	69104			79424	1812	55453	55545	87690	87690					0.03646903520575506
TLKMQTPATA	10	Unmodified	_TLKMQTPATA_					0	0	0		ENST00000242059.9_1_7:29983661-29983727:-|nuORF	ENST00000242059.9_1_7:29983661-29983727:-|nuORF	ENST00000242059.9_1_7:29983661-29983727:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.3052368164062	2	531.286617	1060.55868	-0.47539	-0.00025257	0.54156	0.00028772	0.06617	3.5155E-05	531.2867058927063	47.817	0.61729	47.72	47.349	47.966	-0.097553					38	16	3	0	0	0	0.03519	1	4742	4742		90.601	0	1	1358000			79425	11285	55454	55546	87691	87691					0.030823658800272824
TLKNRGYAA	9	Unmodified	_TLKNRGYAA_					0	0	0		ENSG00000198517|ENST00000343242|MAFK;nc|ENSG00000185022|Q9ULX9-2|MAFF;ENSG00000197063|ENST00000357736|MAFG;ENSG00000185022|ENST00000338483|MAFF	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.28216552734375	2	497.277441	992.540328	-0.40822	-0.000203	0.37492	0.00018644	-0.033302	-1.656E-05	497.27758564013357	22.126	0.94631	21.924	21.614	22.561	-0.20198					42	19	4	0	0	0	0.42604	1	737	737		64.207	14.183	1	361050			79426	10141	55455	55547	87692	87692					0.04375992020322883
TLKPNLTIH	9	Unmodified	_TLKPNLTIH_					0	0	0		nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.8104248046875	2	518.811116	1035.60768	1.0782	0.00055937	-2.5968	-0.0013472	-1.5186	-0.00078785	518.80965249002	96.763	1.4917	96.64	96.108	97.599	-0.12305					65	33	3	0	0	0	0.67687	1	11980	11980		47.657	3.5405	1	2118600			79427	4438	55456	55548	87693	87693					0.09130022231261137
TLKRGQPN	8	Unmodified	_TLKRGQPN_					0	0	0		ENSG00000134864|ENST00000683975|GGACT	ENSG00000134864|ENST00000683975|GGACT	ENSG00000134864|ENST00000683975|GGACT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.26422119140625	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.99042	1	10164	10164		38.806	0	1	2903100			79428	4837	55457	55549	87694	87694					0.05435722848858404
TLKRILLA	8	Unmodified	_TLKRILLA_					0	0	0		ENST00000430246.6_1_14:21730999-21731299:-|nuORF	ENST00000430246.6_1_14:21730999-21731299:-|nuORF	ENST00000430246.6_1_14:21730999-21731299:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.27886962890625	2	464.32112	926.627687	0.47973	0.00022275	0.71211	0.00033065	1.1918	0.00055339	464.32071546398794	51.642	0.10794	51.523	51.468	51.575	-0.11875					4	2	2	0	0	0	0.027866	1	5320	5320		20.482	0	1	74626			79429	14163	55458	55550	87695	87695					0.16143817961892637
TLKRKRRE	8	Unmodified	_TLKRKRRE_					0	0	0		NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant;ENSG00000173848|ENST00000355029|NET1	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	NET1|p.F503Sfs*45|1|0.69|ENSG00000173848|chr10:5456705-5456705|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8465576171875	2	543.846356	1085.67816	-1.6833	-0.00091544	3.7579	0.0020437	2.0746	0.0011283	543.8483119492604	21.11	0.78633	20.897	20.624	21.41	-0.2128					38	15	4	0	0	0	1.043	1	623	623		30.504	2.2494	1	724730			79430	8417	55459	55551	87696	87696					0.1387474033961098
TLKSGKILD	9	Unmodified	_TLKSGKILD_					0	0	0			REV__ENST00000571298.5_1_17:2367609-2378577:-|nuORF	REV__ENST00000571298.5_1_17:2367609-2378577:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7977294921875	2	487.797675	973.580796	-0.05951	-2.9029E-05	-1.0578	-0.00051597	-1.1173	-0.000545	487.7970494161524	75.582	1.604	75.592	75.211	76.815	0.010368					111	41	4	0	0	0	0.64897	1	9188	9188		49.536	0	1	8631500	+		79431	35401	55460	55552	87697	87697					0.0929491362007866
TLKTKLDHW	9	Unmodified	_TLKTKLDHW_					0	0	0		ENST00000434503.5_1_7:156480878-156685794:-|nuORF	ENST00000434503.5_1_7:156480878-156685794:-|nuORF	ENST00000434503.5_1_7:156480878-156685794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	572.296630859375	2	571.321848	1140.62914	-1.3958	-0.00079743	1.3956	0.00079733	-0.00018317	-1.0465E-07	571.3224231038413	64.995	0.53371	64.732	64.417	64.95	-0.2626					28	13	3	0	0	0	0.024535	1	7667	7667		18.324	0	1	443870			79432	14246	55461	55553	87698	87698					0.0644540725998013
TLKVPECLL	9	Unmodified	_TLKVPECLL_					0	0	0		SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7595520019531	2	508.296453	1014.57835	1.9522	0.00099228	1.427	0.00072534	3.3792	0.0017176	508.29702567947464	24.586	0.69572	24.405	24.072	24.767	-0.18089					30	15	3	0	0	0	0.024541	1	1014	1014		24.203	3.7209	1	351610			79433	37965	55462	55554	87699	87699					0.07164741890778714
TLKVPECLL	9	Unmodified	_TLKVPECLL_					0	0	0		SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.296453	1014.57835	-0.71145	-0.00036163	4.0886	0.0020782	3.3772	0.0017166	508.298377764667	24.496	0.44452	24.496	24.253	24.697	0	0.046537	0.00077272	NaN	11.511	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452730			79434	37965	55462	55554							0.07164741890778714
TLKVPECLL	9	Unmodified	_TLKVPECLL_					0	0	0		SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.296453	1014.57835	-1.2497	-0.00063523	4.5672	0.0023215	3.3175	0.0016863	508.29867134877304	24.499	0.44835	24.452	24.22	24.669	-0.047146	0.0023222	0.0012592	NaN	11.511	30	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395280			79435	37965	55462	55554							0.07164741890778714
TLKVPECLL	9	Unmodified	_TLKVPECLL_					0	0	0		SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.296453	1014.57835	0.15565	7.9117E-05	3.745	0.0019036	3.9007	0.0019827	508.2979532649503	24.371	0.45541	24.449	24.23	24.685	0.078344	-0.00026092	0.00042342	NaN	11.511	30	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402410			79436	37965	55462	55554							0.07164741890778714
TLKVPECLL	9	Unmodified	_TLKVPECLL_					0	0	0		SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.296453	1014.57835	-0.2405	-0.00012224	3.4874	0.0017726	3.2469	0.0016504	508.29804266045124	24.749	0.63592	24.534	24.218	24.853	-0.2151	0.084045	0.00016156	NaN	11.511	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374260			79437	37965	55462	55554							0.07164741890778714
TLKVPECLL	9	Unmodified	_TLKVPECLL_					0	0	0		SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	SPOPL|p.R185L|1|0.34|ENSG00000144228|chr2:138559095-138559095|G/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.296453	1014.57835	-0.29582	-0.00015036	3.8056	0.0019344	3.5097	0.001784	508.2982376031575	24.536	0.50548	24.361	24.048	24.554	-0.17484	-0.088337	0.00048498	NaN	11.511	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410530			79438	37965	55462	55554							0.07164741890778714
TLKYGERSKQ	10	Unmodified	_TLKYGERSKQ_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.1553039550781	3	403.891055	1208.65134	-0.5158	-0.00020833	2.0621	0.00083285	1.5463	0.00062452	403.8920586126748	32.672	0.44428	32.514	32.323	32.767	-0.15772					16	10	2	0	0	0	0.03519	1	2269	2269		25.892	0	1	93002			79439	4769	55463	55555	87700	87700					0.05535586937753578
TLKYQQQP	8	Unmodified	_TLKYQQQP_					0	0	0		ENST00000598982.5_1_19:52673016-52674656:-|nuORF	ENST00000598982.5_1_19:52673016-52674656:-|nuORF	ENST00000598982.5_1_19:52673016-52674656:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.29443359375	2	503.271824	1004.5291	-0.89437	-0.00045011	0.733	0.0003689	-0.16138	-8.1217E-05	503.2721235798189	53.726	0.4152	53.59	53.393	53.808	-0.13617					22	12	3	0	0	0	0.027866	1	5659	5659		26.796	0	1	459230			79440	17481	55464	55556	87701	87701					0.02701169926183411
TLKYWYHG	8	Unmodified	_TLKYWYHG_					0	0	0		nc|ENSG00000138400|Q5I0G3-3|MDH1B;nc|ENSG00000138400|Q5I0G3-2|MDH1B;ENSG00000138400|ENST00000374412|MDH1B	nc|ENSG00000138400|Q5I0G3-3|MDH1B	nc|ENSG00000138400|Q5I0G3-3|MDH1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2727661132812	2	534.269084	1066.52362	-0.031767	-1.6972E-05	-4.1068	-0.0021941	-4.1385	-0.0022111	534.2670991825889	49.77	0.82662	49.59	49.307	50.133	-0.18071					42	21	4	0	0	0	0.027866	1	5032	5032		35.618	13.039	1	1264900			79441	5240	55465	55557	87702	87702					-0.006985088656392691
TLLAPVVMAS	10	Unmodified	_TLLAPVVMAS_					0	0	0		ENST00000437774.5_1_16:90039155-90044150:+|nuORF	ENST00000437774.5_1_16:90039155-90044150:+|nuORF	ENST00000437774.5_1_16:90039155-90044150:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2903137207031	2	501.288628	1000.5627	0.66236	0.00033203	2.9983	0.001503	3.6606	0.001835	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	1.1329	1	10046	10046		27.882	1.0861	1	3151900			79442	14299	55466	55558	87703	87703					0.06244455373735036
TLLCGWLVC	9	Unmodified	_TLLCGWLVC_					0	0	0			REV__ENST00000489304.5_1_20:44746991-44755859:+|nuORF	REV__ENST00000489304.5_1_20:44746991-44755859:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.3030700683594	2	504.256274	1006.49799	-0.24394	-0.00012301	-1.0197	-0.00051418	-1.2636	-0.00063718	504.2556577729967	24.07	0.64478	23.89	23.519	24.164	-0.17989					24	14	3	0	0	0	0.024517	1	961	961		19.36	0	1	187130	+		79443	21177	55467	55559	87704	87704					-0.004994427039150651
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7762451171875	2	531.776939	1061.53933	-0.3135	-0.00016671	0.69931	0.00037188	0.38581	0.00020517	531.7772726262651	87.43	1.5299	87.43	87.067	88.597	0					76	36	4	0	0	0	0.021872	1	11000	11000		148.04	71.269	1	2894400			79444	3937	55468	55560	87705	87705					0.011017328607522359
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8170166015625	2	531.776939	1061.53933	-0.030805	-1.6382E-05	0.22423	0.00011924	0.19342	0.00010286	531.7770366848367	87.417	1.5705	87.382	86.983	88.554	-0.035362					76	37	4	0	0	0	0.016885	1	10973	10973		131.03	48.791	1	2680500			79445	3937	55468	55560	87706	87706					0.011017328607522359
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.775146484375	2	531.776939	1061.53933	0.6387	0.00033965	-0.14875	-7.9103E-05	0.48995	0.00026055	531.776702870857	87.42	1.2754	87.441	87.051	88.327	0.021263					75	30	4	0	0	0	0.021872	1	10925	10925		148.04	54.9	1	2735500			79446	3937	55468	55560	87707	87707					0.011017328607522359
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.81640625	2	531.776939	1061.53933	-0.31886	-0.00016956	3.6564	0.0019444	3.3376	0.0017748	531.7782856183521	87.458	1.4683	87.279	86.944	88.413	-0.17874					89	35	4	0	0	0	0.023635	1	10664	10664		56.721	9.0637	1	3151200			79447	3937	55468	55560	87708	87708					0.011017328607522359
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.8150634765625	2	531.776939	1061.53933	-0.0069284	-3.6844E-06	2.6276	0.0013973	2.6207	0.0013936	531.7778075304798	87.385	1.2221	87.248	86.926	88.148	-0.13613					80	29	4	0	0	0	0.022411	1	10629	10629		42.864	0	1	3238400			79448	3937	55468	55560	87709	87709					0.011017328607522359
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000122642|O95302-2|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	ENSG00000122642|ENST00000242209|FKBP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.7794189453125	2	531.776939	1061.53933	-0.143	-7.6045E-05	2.4557	0.0013059	2.3127	0.0012298	531.7784619847306	87.409	1.363	87.271	86.911	88.274	-0.13734					63	32	3	0	0	0	0.22902	1	10633	10633		85.161	17.667	1	2134100			79449	3937	55468	55560	87710	87710					0.011017328607522359
TLLEEDKY	8	Unmodified	_TLLEEDKY_					0	0	0			REV__ENSG00000119042|ENST00000417098|SATB2	REV__ENSG00000119042|ENST00000417098|SATB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7568664550781	2	505.755672	1009.49679	0.38029	0.00019234	3.1337	0.0015849	3.514	0.0017772	505.75711112467206	100.82	0.60191	100.69	100.55	101.15	-0.12576					36	16	3	0	0	0	0.87148	1	12519	12519		53.351	7.3995	1	277730	+		79450	22438	55469	55561	87711	87711					-0.007576622674719147
TLLEEDKY	8	Unmodified	_TLLEEDKY_					0	0	0			REV__ENSG00000119042|ENST00000417098|SATB2	REV__ENSG00000119042|ENST00000417098|SATB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7568359375	2	505.755672	1009.49679	-0.095425	-4.8262E-05	3.6563	0.0018492	3.5609	0.0018009	505.7573751682466	100.79	0.91064	100.61	100.28	101.19	-0.17178					37	23	2	0	0	0	1.0106	1	12520	12520		35.618	5.1146	1	240980	+		79451	22438	55469	55561	87712	87712					-0.007576622674719147
TLLEEVQEL	9	Unmodified	_TLLEEVQEL_					0	0	0		nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2;ENST00000281620.10_1_13:26279420-26594120:+|nuORF	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.2896118164062	2	537.289879	1072.56521	-0.75092	-0.00040346	0.12652	6.7976E-05	-0.6244	-0.00033549	537.290011582019	82.242	1.0558	82.242	81.909	82.965	0					44	24	3	0	0	0	0.01388	3	10264	10254;10264;10278		180.87	40.899	1	1228800			79452	4663	55470	55562	87713;87714;87715	87714					0.03182582312388149
TLLEEVQEL	9	Unmodified	_TLLEEVQEL_					0	0	0		nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2;ENST00000281620.10_1_13:26279420-26594120:+|nuORF	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.2898559570312	2	537.289879	1072.56521	0.55025	0.00029564	-1.1471	-0.00061631	-0.59683	-0.00032067	537.2892729960289	82.268	0.88618	82.158	81.881	82.767	-0.11006					42	20	3	0	0	0	0.013337	2	10236	10236;10249		180.87	40.899	1	1187300			79453	4663	55470	55562	87716;87717	87716					0.03182582312388149
TLLEEVQEL	9	Unmodified	_TLLEEVQEL_					0	0	0		nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2;ENST00000281620.10_1_13:26279420-26594120:+|nuORF	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	nc|ENSG00000132932|Q9NTI2-1|ATP8A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.2890625	2	537.289879	1072.56521	-0.97426	-0.00052346	0.61014	0.00032782	-0.36412	-0.00019564	537.2901090118713	82.051	1.6758	82.076	81.454	83.129	0.025711					63	39	3	0	0	0	0.013337	2	10165	10165;10177		185.55	40.177	1	1400400			79454	4663	55470	55562	87718;87719	87718					0.03182582312388149
TLLEKDYFL	9	Unmodified	_TLLEKDYFL_					0	0	0		nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF	nc|ENSG00000154845|Q8TF05-2|PPP4R1	nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.306640625	2	571.310615	1140.60668	-0.043174	-2.4666E-05	-0.41302	-0.00023596	-0.4562	-0.00026063	571.3103954047358	70.5	1.023	70.5	70.316	71.339	0					63	24	4	0	0	0	0.16638	1	8530	8530		95.815	18.498	1	2501100			79455	6439	55471	55563	87720	87720					0.041997630717105494
TLLEKDYFL	9	Unmodified	_TLLEKDYFL_					0	0	0		nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF	nc|ENSG00000154845|Q8TF05-2|PPP4R1	nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.3082885742188	2	571.310615	1140.60668	-0.67623	-0.00038633	0.42446	0.0002425	-0.25177	-0.00014384	571.3108351270353	70.616	1.3071	70.629	70.385	71.692	0.012421					87	32	5	0	0	0	0.086035	2	8462	8462;8476		115.49	36.043	1	2913100			79456	6439	55471	55563	87721;87722	87721					0.041997630717105494
TLLEKDYFL	9	Unmodified	_TLLEKDYFL_					0	0	0		nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF	nc|ENSG00000154845|Q8TF05-2|PPP4R1	nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.303955078125	2	571.310615	1140.60668	0.22603	0.00012913	-0.54921	-0.00031377	-0.32318	-0.00018463	571.3103178092149	70.816	1.5398	70.545	70.333	71.873	-0.27185					71	38	3	0	0	0	0.094442	2	8273	8260;8273		112.41	31.956	1	3902100			79457	6439	55471	55563	87723;87724	87724					0.041997630717105494
TLLEKDYFL	9	Unmodified	_TLLEKDYFL_					0	0	0		nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF;ENST00000285124.12_1_18:9547789-9562973:-|nuORF	nc|ENSG00000154845|Q8TF05-2|PPP4R1	nc|ENSG00000154845|Q8TF05-2|PPP4R1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.310615	1140.60668	0.84994	0.00048558	-1.1457	-0.00065454	-0.29575	-0.00016896	571.3098296145153	70.884	1.3545	70.591	70.329	71.683	-0.29291	0.025061	-0.00084231	NaN	115.49	90	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2266200			79458	6439	55471	55563							0.041997630717105494
TLLEQNRDV	9	Unmodified	_TLLEQNRDV_					0	0	0			REV__ENST00000402746.5_1_7:2260573-2272521:-|nuORF	REV__ENST00000402746.5_1_7:2260573-2272521:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.349853515625	2	544.290745	1086.56694	-0.53437	-0.00029085	0.38085	0.0002073	-0.15352	-8.3558E-05	544.2910212043446	25.734	0.46822	25.814	25.54	26.008	0.080088					20	10	3	0	0	0	0.024511	1	1190	1190		32.812	0	1	90657	+		79459	31876	55472	55564	87725	87725					0.027116361209891693
TLLERAFSL	9	Unmodified	_TLLERAFSL_					0	0	0		nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.3023681640625	2	525.303124	1048.5917	-0.31186	-0.00016382	0.29119	0.00015296	-0.02067	-1.0858E-05	525.3031203269292	72.149	0.96976	72.149	71.94	72.91	0					47	23	4	0	0	0	0.16539	1	8778	8778		96.034	13.793	1	842900			79460	3990	55473	55565	87726	87726					0.06934315994362805
TLLERAFSL	9	Unmodified	_TLLERAFSL_					0	0	0		nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.3023681640625	2	525.303124	1048.5917	0.46372	0.00024359	-0.33523	-0.0001761	0.12849	6.7495E-05	525.3028615671299	72.52	1.1994	72.239	71.92	73.119	-0.28124					55	29	4	0	0	0	0.33603	1	8794	8794		70.816	8.7088	1	1070500			79461	3990	55473	55565	87727	87727					0.06934315994362805
TLLERAFSL	9	Unmodified	_TLLERAFSL_					0	0	0		nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.3021240234375	2	525.303124	1048.5917	0.73033	0.00038365	-0.71184	-0.00037393	0.018496	9.7159E-06	525.3026457133536	72.264	1.1196	72.273	71.988	73.107	0.0097733					50	27	3	0	0	0	0.33603	1	8712	8712		70.816	16.04	1	982240			79462	3990	55473	55565	87728	87728					0.06934315994362805
TLLERAFSL	9	Unmodified	_TLLERAFSL_					0	0	0		nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.303466796875	2	525.303124	1048.5917	-0.22159	-0.0001164	-0.06543	-3.437E-05	-0.28702	-0.00015077	525.3029220680563	72.449	1.459	72.172	71.868	73.327	-0.2769					79	34	4	0	0	0	0.1764	2	8492	8483;8492		93.598	18.554	1	1446000			79463	3990	55473	55565	87729;87730	87730					0.06934315994362805
TLLERAFSL	9	Unmodified	_TLLERAFSL_					0	0	0		nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3035888671875	2	525.303124	1048.5917	0.19601	0.00010297	-0.49448	-0.00025975	-0.29846	-0.00015678	525.3026866993481	72.437	1.4951	72.173	71.799	73.294	-0.26479					81	35	4	0	0	0	0.20652	2	8497	8487;8497		88.177	22.556	1	1562200			79464	3990	55473	55565	87731;87732	87732					0.06934315994362805
TLLERAFSL	9	Unmodified	_TLLERAFSL_					0	0	0		nc|ENSG00000123607|Q7Z4L5-2|TTC21B;ENST00000464374.5_1_2:166785584-166810215:-|nuORF;ENSG00000123607|ENST00000243344|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.303466796875	2	525.303124	1048.5917	-0.29147	-0.00015311	-0.14315	-7.5195E-05	-0.43461	-0.0002283	525.3028495497366	72.215	1.251	72.017	71.748	72.999	-0.19811					62	29	4	0	0	0	0.18694	1	8448	8448		91.265	9.0247	1	1923100			79465	3990	55473	55565	87733	87733					0.06934315994362805
TLLETEMLL	9	Oxidation (M)	_TLLETEM(Oxidation (M))LL_		TLLETEM(1)LL		TLLETEM(91)LL	0	0	1		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7911376953125	2	539.788658	1077.56276	0.22372	0.00012076	-1.8456	-0.00099624	-1.6219	-0.00087548	539.7873009628128	83.132	0.89467	83.042	82.701	83.596	-0.090454					33	20	2	0	0	0	0.18915	1	10350	10350		90.777	10.837	1	225850			79466	7217	55474	55566	87734	87734		302			0.027084105830681438
TLLEVLLN	8	Unmodified	_TLLEVLLN_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.264404296875	2	457.781493	913.548434	-0.96162	-0.00044021	1.266	0.00057957	0.30442	0.00013936	457.78187510385004	79.891	1.0516	79.719	79.399	80.45	-0.17226					47	24	3	0	0	0	0.027866	1	9959	9959		11.511	0	1	947620			79467	10202	55475	55567	87735	87735					0.08820126217096913
TLLEYKDL	8	Unmodified	_TLLEYKDL_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.7752380371094	2	497.776408	993.538263	0.48999	0.00024391	-3.272	-0.0016287	-2.782	-0.0013848	497.7747342576897	100.8	1.2787	100.67	100.4	101.68	-0.12576					63	32	3	0	0	0	0.47665	1	12517	12517		87.754	2.3948	1	770490	+		79468	25043	55476	55568	87736	87736					0.04123518491860523
TLLEYKDL	8	Unmodified	_TLLEYKDL_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7751159667969	2	497.776408	993.538263	-0.099282	-4.942E-05	-2.9061	-0.0014466	-3.0054	-0.001496	497.7749738154906	100.92	0.87547	100.75	100.46	101.33	-0.17178					51	22	3	0	0	0	0.73796	1	12517	12517		64.207	2.0999	1	606910	+		79469	25043	55476	55568	87737	87737					0.04123518491860523
TLLFCKNVG	9	Unmodified	_TLLFCKNVG_					0	0	0			REV__nc|ENSG00000249730|P0C629|OR10J4	REV__nc|ENSG00000249730|P0C629|OR10J4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7757568359375	2	497.773145	993.531738	0.31474	0.00015667	2.6697	0.0013289	2.9844	0.0014856	497.77466424727845	100.84	1.0196	100.84	100.53	101.55	0					54	23	3	0	0	0	0.22754	1	12885	12885		85.359	8.5128	1	849760	+		79470	37167	55477	55569	87738	87738					0.03471302059494974
TLLFIMFPF	9	Unmodified	_TLLFIMFPF_					0	0	0		ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.29541015625	2	564.811739	1127.60893	-0.50997	-0.00028804	-1.6518	-0.00093297	-2.1618	-0.001221	564.8104091832375	103.95	0.44156	103.95	103.67	104.12	0					18	10	2	0	0	0	0.024535	1	13309	13309		18.324	0	1	49286			79471	8938	55478	55570	87739	87739					0.05022520275815623
TLLFPGGLAL	10	Unmodified	_TLLFPGGLAL_					0	0	0			REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.30413818359375	2	501.305136	1000.59572	-0.31526	-0.00015804	-4.2958	-0.0021535	-4.6111	-0.0023116	501.3029311140144	24.94	0.86609	24.713	24.365	25.231	-0.22683					50	19	4	0	0	0	0.91051	1	1165	1165		53.351	5.6941	1	2301400	+		79472	24147	55479	55571	87740	87740					0.09544405488099983
TLLFPPVWV	9	Unmodified	_TLLFPPVWV_					0	0	0		ENST00000251241.8_1_17:57685310-57685481:+|nuORF	ENST00000251241.8_1_17:57685310-57685481:+|nuORF	ENST00000251241.8_1_17:57685310-57685481:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8084716796875	2	536.315503	1070.61645	0.42095	0.00022576	0.54704	0.00029338	0.96798	0.00051914	536.3157792749436	85.665	1.2124	85.665	84.958	86.171	0					38	28	2	0	0	0	0.024466	1	10662	10662		25.45	6.0902	1	134210			79473	11351	55480	55572	87741	87741					0.08396995867747137
TLLGAVVQV	9	Unmodified	_TLLGAVVQV_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant;nc|ENSG00000197410|Q6V1P9-5|DCHS2	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2827453613281	2	450.28166	898.548768	-0.048259	-2.173E-05	0.16926	7.6216E-05	0.121	5.4486E-05	450.28155427603804	78.696	1.158	78.714	78.4	79.558	0.018677					56	27	3	0	0	0	0.11092	1	9667	9667		108.09	1.6723	1	809670			79474	624	55481	55573	87742	87742					0.09543545936958253
TLLGFLIPL	9	Unmodified	_TLLGFLIPL_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.8157958984375	2	493.817879	985.621205	-0.25623	-0.00012653	-3.2311	-0.0015956	-3.4874	-0.0017221	493.81615577351283	66.825	1.3758	66.849	66.559	67.935	0.023911					71	33	3	0	0	0	0.72268	1	7884	7884		44.531	5.7775	1	1978100			79475	10216	55482	55574	87743	87743					0.12781880010527402
TLLGFLIPL	9	Unmodified	_TLLGFLIPL_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	493.817879	985.621205	-0.01645	-8.1233E-06	-3.0292	-0.0014959	-3.0456	-0.001504	493.8161430642543	66.741	1.2941	66.741	66.461	67.755	0	-0.035851	-7.4346E-05	NaN	44.531	65	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2254700			79476	10216	55482	55574							0.12781880010527402
TLLGFLIPL	9	Unmodified	_TLLGFLIPL_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.817879	985.621205	-0.40836	-0.00020165	-2.3584	-0.0011646	-2.7668	-0.0013663	493.8163991448528	66.986	0.79728	66.74	66.618	67.415	-0.24517	-0.036289	0.00058814	NaN	44.531	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528110			79477	10216	55482	55574							0.12781880010527402
TLLGHEFVL	9	Unmodified	_TLLGHEFVL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7929077148438	2	514.792392	1027.57023	0.032585	1.6775E-05	0.12863	6.6218E-05	0.16122	8.2993E-05	514.7923132904441	72.019	1.2814	71.744	71.433	72.715	-0.2751					77	30	4	0	0	0	0.31247	1	8422	8422		73.975	6.4811	1	2308800			79478	751	55483	55575	87744	87744					0.057549309656678815
TLLGHEFVL	9	Unmodified	_TLLGHEFVL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.7932739257812	2	514.792392	1027.57023	0.30784	0.00015847	-0.23968	-0.00012339	0.068161	3.5089E-05	514.7921472124544	71.974	1.4515	71.712	71.403	72.855	-0.26199					86	34	5	0	0	0	0.17455	1	8427	8427		94.006	22.129	1	2121200			79479	751	55483	55575	87745	87745					0.057549309656678815
TLLGHEFVL	9	Unmodified	_TLLGHEFVL_					0	0	0		ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENST00000533415.5_1_17:45198303-45266605:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.7933959960938	2	514.792392	1027.57023	0.06176	3.1794E-05	-0.043307	-2.2294E-05	0.018453	9.4997E-06	514.792244045538	71.844	1.3977	71.638	71.305	72.702	-0.20613					64	33	3	0	0	0	0.17455	3	8394	8386;8394;8404		94.006	22.129	1	2584500			79480	751	55483	55575	87746;87747;87748	87747					0.057549309656678815
TLLGHLDYI	9	Unmodified	_TLLGHLDYI_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7903442382812	2	522.78985	1043.56515	0.12651	6.6136E-05	-0.16394	-8.5704E-05	-0.03743	-1.9568E-05	522.7895494365927	70.48	0.55242	70.48	70.316	70.868	0					28	12	3	0	0	0	0.33245	1	8518	8518		71.296	7.0884	1	893520			79481	3916	55484	55576	87749	87749					0.04510627103036313
TLLGHLDYI	9	Unmodified	_TLLGHLDYI_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7908325195312	2	522.78985	1043.56515	0.72226	0.00037759	-1.0285	-0.00053767	-0.30621	-0.00016008	522.7891942775	70.848	0.74095	70.555	70.329	71.07	-0.29291					44	17	4	0	0	0	0.22754	1	8525	8525		85.359	8.5853	1	928390			79482	3916	55484	55576	87750	87750					0.04510627103036313
TLLGHLDYI	9	Unmodified	_TLLGHLDYI_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;ENST00000541366.1_1_1:160303391-160312960:-|nuORF	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7894897460938	2	522.78985	1043.56515	-0.13088	-6.8421E-05	0.47272	0.00024713	0.34184	0.00017871	522.7898531627812	70.779	1.0243	70.507	70.333	71.357	-0.27185					34	25	2	0	0	0	0.17455	1	8250	8250		94.006	6.2521	1	593240			79483	3916	55484	55576	87751	87751					0.04510627103036313
TLLGVGPVAM	10	Unmodified	_TLLGVGPVAM_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.277099609375	2	479.275521	956.536489	0.41467	0.00019874	2.5663	0.00123	2.981	0.0014287	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	1.1056	1	10498	10498		31.955	1.4512	1	1015600	+		79484	21700	55485	55577	87752	87752					0.05648186202256511
TLLGYAVRL	9	Unmodified	_TLLGYAVRL_					0	0	0			REV__ENST00000367097.7_1_6:158850822-158870058:+|nuORF	REV__ENST00000367097.7_1_6:158850822-158870058:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.30804443359375	2	503.30821	1004.60187	-0.27012	-0.00013595	0.49727	0.00025028	0.22716	0.00011433	503.3083143409052	65.064	1.0766	65.101	64.743	65.82	0.037384					72	29	4	0	0	0	0.35646	1	7629	7629		68.787	2.3575	1	5379200	+		79485	31002	55486	55578	87753	87753					0.09974923719619255
TLLHRSQT	8	Unmodified	_TLLHRSQT_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.29290771484375	2	478.269616	954.524678	-0.086449	-4.1346E-05	-4.2388	-0.0020273	-4.3252	-0.0020686	478.2674210224213	51.26	0.78487	51.111	50.758	51.542	-0.14916					56	21	4	0	0	0	0.027866	1	5453	5453		17.365	0	1	1459500			79486	4534	55487	55579	87754	87754					0.045597055032772005
TLLHVIRID	9	Unmodified	_TLLHVIRID_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7906494140625	2	540.332216	1078.64988	-1.1147	-0.00060231	0.58766	0.00031753	-0.52705	-0.00028478	540.8328097330862	83.287	0.98918	83.287	83.008	83.997	0					39	22	3	0	0	0	0.024495	1	10374	10374		26.693	0	1	124630			79487	11074	55488	55580	87755	87755					0.11369997639667417
TLLHWNRGF	9	Unmodified	_TLLHWNRGF_					0	0	0			REV__ENSG00000174946|ENST00000309180|GPR171	REV__ENSG00000174946|ENST00000309180|GPR171	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2791748046875	2	572.306532	1142.59851	-0.10533	-6.0283E-05	1.8078	0.0010346	1.7024	0.00097431	572.3074863757147	78.033	0.63754	77.877	77.49	78.128	-0.15592					24	14	2	0	0	0	0.024523	1	9300	9300		21.96	7.095	1	203840	+		79488	26908	55489	55581	87756	87756					0.03291673665603412
TLLIIYSF	8	Unmodified	_TLLIIYSF_					0	0	0		ENSG00000156298|ENST00000378482|TSPAN7	ENSG00000156298|ENST00000378482|TSPAN7	ENSG00000156298|ENST00000378482|TSPAN7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2881164550781	2	485.286411	968.55827	4.1372	0.0020077	0.5089	0.00024696	4.6461	0.0022547	485.2865051543961	18.101	0.44699	18.164	17.955	18.402	0.063307					15	9	2	0	0	0	1.0574	1	210	210		13.775	0	1	49925			79489	6520	55490	55582	87757	87757					0.07273314222470617
TLLIVSTVI	9	Unmodified	_TLLIVSTVI_					0	0	0			REV__nc|ENSG00000130226|P42658-2|DPP6	REV__nc|ENSG00000130226|P42658-2|DPP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7842712402344	2	479.812793	957.611034	0.17881	8.5793E-05	-0.46898	-0.00022502	-0.29018	-0.00013923	479.81242229791195	96.404	0.81954	96.404	96.194	97.014	0					33	18	2	0	0	0	0.023817	1	12344	12344		82.305	18.999	1	256090	+		79490	23093	55491	55583	87758	87758					0.13053272285276307
TLLKEAIHR	9	Unmodified	_TLLKEAIHR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8318481445312	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.86013	1	9220	9220		35.152	0.97948	1	94452000			79491	6744	55492	55584	87759	87759					0.10849113496897189
TLLKEAIHR	9	Unmodified	_TLLKEAIHR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.8316040039062	2	540.82984	1079.64513	-0.45582	-0.00024652	3.2955	0.0017823	2.8397	0.0015358	540.8316944739571	75.373	1.966	75.383	75.051	77.017	0.010376					182	50	6	0	0	0	0.72494	2	9150	9150;9198		44.377	3.639	1	103560000			79492	6744	55492	55584	87760;87761	87760					0.10849113496897189
TLLKERAHI	9	Unmodified	_TLLKERAHI_					0	0	0			REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	REV__ENST00000566849.5_1_15:43653273-43656590:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8314819335938	2	540.82984	1079.64513	-1.5879	-0.00085881	4.3337	0.0023438	2.7457	0.001485	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	0.82115	1	9307	9307		37.812	1.3648	1	90806000	+		79493	23995	55493	55585	87762	87762					0.10849113496897189
TLLKLRITN	9	Unmodified	_TLLKLRITN_					0	0	0		nc|ENSG00000180881|Q9BXY5-2|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2;nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5|CAPS2	nc|ENSG00000180881|Q9BXY5-2|CAPS2	nc|ENSG00000180881|Q9BXY5-2|CAPS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3497924804688	2	536.347866	1070.68118	-0.55038	-0.00029519	4.1632	0.0022329	3.6128	0.0019377	536.3499720984712	87.617	1.069	87.479	87.163	88.232	-0.13734					67	25	4	0	0	0	0.51687	1	10672	10672		58.23	6.8945	1	914780			79494	9005	55494	55586	87763	87763					0.1486657067375745
TLLKWLDL	8	Unmodified	_TLLKWLDL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2961120605469	2	501.305136	1000.59572	1.6824	0.0008434	-3.7081	-0.0018589	-2.0257	-0.0010155	501.3025143745358	63.556	0.31937	63.61	63.483	63.803	0.054104					12	8	2	0	0	0	0.027866	1	7365	7365		79.451	0	1	166030			79495	6398	55495	55587	87764	87764					0.09544405488099983
TLLLFALEF	9	Unmodified	_TLLLFALEF_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.814453125	2	533.812793	1065.61103	-0.41025	-0.000219	0.637	0.00034004	0.22675	0.00012104	533.8128275898247	104.01	1.0144	104.01	103.57	104.58	0.0031357					45	21	4	0	0	0	0.62163	1	13325	13325		51.335	3.4199	1	400730	+		79496	26216	55496	55588	87765	87765					0.08085272285279643
TLLLFEQSL	9	Unmodified	_TLLLFEQSL_					0	0	0			REV__nc|nan|Q9BVC5-2|C2orf49	REV__nc|nan|Q9BVC5-2|C2orf49	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.8073120117188	2	532.305332	1062.59611	-0.33258	-0.00017703	0.9143	0.00048669	0.58173	0.00030966	532.3052809765273	58.607	0.56343	58.426	58.187	58.75	-0.18133					24	13	3	0	0	0	0.024466	1	6422	6422		47.657	12.039	1	927740	+		79497	23608	55497	55589	87766	87766					0.0673178041729443
TLLLGHPLEL	10	Unmodified	_TLLLGHPLEL_					0	0	0			REV__ENST00000495983.1_1_9:130670673-130672537:-|nuORF	REV__ENST00000495983.1_1_9:130670673-130672537:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3322143554688	2	553.334424	1104.6543	-0.20591	-0.00011394	-3.4089	-0.0018862	-3.6148	-0.0020002	553.3323900913857	95.407	1.2671	95.407	95.007	96.274	0					99	29	5	0	0	0	1.089	1	12147	12147		34.173	3.6689	1	4511400	+		79498	33813	55498	55590	87767	87767					0.10615462062560255
TLLLGHPLEL	10	Unmodified	_TLLLGHPLEL_					0	0	0			REV__ENST00000495983.1_1_9:130670673-130672537:-|nuORF	REV__ENST00000495983.1_1_9:130670673-130672537:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.3320922851562	2	553.334424	1104.6543	0.24251	0.00013419	-3.8038	-0.0021048	-3.5613	-0.0019706	553.3321684369349	95.389	1.2262	95.393	95.009	96.235	0.0041199					91	28	4	0	0	0	1.089	1	12095	12095		34.173	0	1	4195000	+		79499	33813	55498	55590	87768	87768					0.10615462062560255
TLLLHQAF	8	Unmodified	_TLLLHQAF_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2;ENST00000483923.5_1_10:100147060-100150703:-|nuORF	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7537841796875	2	471.774003	941.533452	-0.31986	-0.0001509	-3.9084	-0.0018439	-4.2282	-0.0019948	471.77198337832493	35.735	0.96697	35.735	35.129	36.096	0					36	25	2	0	0	0	0.027866	1	2786	2786		26.796	14.589	1	344840			79500	3777	55499	55591	87769	87769					0.06034679139747823
TLLLHQAF	8	Unmodified	_TLLLHQAF_					0	0	0		ENSG00000119943|ENST00000370575|PYROXD2;ENST00000483923.5_1_10:100147060-100150703:-|nuORF	ENSG00000119943|ENST00000370575|PYROXD2	ENSG00000119943|ENST00000370575|PYROXD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7532958984375	2	471.774003	941.533452	-0.66504	-0.00031375	-3.3091	-0.0015612	-3.9742	-0.0018749	471.77230489415933	35.604	0.43631	35.582	35.347	35.783	-0.021767					19	10	2	0	0	0	0.027866	1	2747	2747		19.36	0	1	285420			79501	3777	55499	55591	87770	87770					0.06034679139747823
TLLLLLLL	8	Unmodified	_TLLLLLLL_					0	0	0		ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000204583|ENST00000376608|LRCOL1;nc|ENSG00000161911|Q86YW5-2|TREML1;nc|ENSG00000161911|Q86YW5-3|TREML1;ENSG00000161911|ENST00000426005|TREML1;CON__P50448;CON__ENSEMBL:ENSBTAP00000024146;ENSG00000161610|ENST00000293330|HCRT;ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-2|TAS1R1	REV__ENSG00000135077|ENST00000307851|HAVCR2;CON__ENSEMBL:ENSBTAP00000024146;ENSG00000161610|ENST00000293330|HCRT;ENSG00000173662|ENST00000333172|TAS1R1;REV__ENSG00000125810|ENST00000246006|CD93;REV__ENSG00000153446|ENST00000472572|C16orf89	CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.2584533691406	2	456.330622	910.646691	-0.026839	-1.2248E-05	-1.7936	-0.00081845	-1.8204	-0.0008307	456.3291908412682	32.399	0.27027	32.399	32.224	32.494	0					9	6	2	0	0	0	0.027866	1	2249	2249		1.619	0	1	27606		+	79502	489;23508;6882;8396;22844;24904	55500	55592	87771	87771					0.18779354532955495
TLLLLLVLL	9	Unmodified	_TLLLLLVLL_					0	0	0			REV__ENSG00000163735|ENST00000296027|CXCL5	REV__ENSG00000163735|ENST00000296027|CXCL5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.323974609375	2	505.864829	1009.7151	-0.044679	-2.2601E-05	-0.98422	-0.00049788	-1.0289	-0.00052049	505.8646148801193	79.103	0.16374	78.952	78.862	79.026	-0.15051					6	3	2	0	0	0	0.024541	1	9450	9450		19.36	0	1	35832	+		79503	25625	55501	55593	87772	87772					0.21063599112801512
TLLLLLVLL	9	Unmodified	_TLLLLLVLL_					0	0	0			REV__ENSG00000163735|ENST00000296027|CXCL5	REV__ENSG00000163735|ENST00000296027|CXCL5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.864829	1009.7151	-0.57778	-0.00029228	6.1536	0.0031129	5.5758	0.0028206	505.86734873417043	79.138	0.41463	78.965	78.777	79.192	-0.17226	0.0065432	0.003544	NaN	19.36	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92296	+		79504	25625	55501	55593							0.21063599112801512
TLLLPRRHVRR	11	Unmodified	_TLLLPRRHVRR_					0	0	0		ENSG00000213930|ENST00000378842|GALT;ENST00000489643.6_1_9:34648764-34649266:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;nc|ENSG00000213930|P07902-2|GALT	ENSG00000213930|ENST00000378842|GALT;nc|ENSG00000213930|P07902-2|GALT	ENSG00000213930|ENST00000378842|GALT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.2476806640625	3	472.972266	1415.89497	0.36815	0.00017413	-2.834	-0.0013404	-2.4658	-0.0011663	472.97090142823276	49.888	2.0187	49.888	49.582	51.6	0					182	57	4	0	0	0	0.024846	1	5377	5377		11.932	0	1	1485100			79505	10529;18713	55502	55594	87773	87773					0.20365715893126435
TLLLPVLAL	9	Unmodified	_TLLLPVLAL_					0	0	0		ENST00000409978.5_2_2:39184070-39186986:+|nuORF	ENST00000409978.5_2_2:39184070-39186986:+|nuORF	ENST00000409978.5_2_2:39184070-39186986:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.82568359375	2	476.825704	951.636855	0.47667	0.00022729	-0.24161	-0.00011521	0.23506	0.00011208	476.82550989564135	106.19	0.45373	106.19	105.95	106.41	-0.0013199					25	14	2	0	0	0	0.98697	1	13595	13595		23.042	2.5607	1	358320			79506	13798	55503	55595	87774	87774					0.15910166527544334
TLLLRTPLL	9	Unmodified	_TLLLRTPLL_					0	0	0			REV__ENST00000525250.5_1_11:820874-821186:+|nuORF	REV__ENST00000525250.5_1_11:820874-821186:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2694091796875	2	520.347335	1038.68012	0.053724	2.7955E-05	-0.43227	-0.00022493	-0.37854	-0.00019697	520.3469535434385	75.533	0.76377	75.544	75.25	76.013	0.010376					36	20	3	0	0	0	0.023417	1	9159	9159		79.451	2.6769	1	622410	+		79507	34410	55504	55596	87775	87775					0.1623235630486306
TLLLSNVSP	9	Unmodified	_TLLLSNVSP_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2933044433594	2	472.276575	942.538597	-0.095066	-4.4897E-05	0.19864	9.3811E-05	0.10357	4.8914E-05	472.27653922986207	53.36	0.68878	53.456	52.83	53.518	0.095669					35	18	3	0	0	0	0.024397	1	5593	5593		47.657	1.6851	1	1504400			79508	2709	55505	55597	87776	87776					0.06502938211713172
TLLLSNVSP	9	Unmodified	_TLLLSNVSP_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.276575	942.538597	0.49391	0.00023326	-0.67334	-0.000318	-0.17943	-8.4741E-05	472.27615713962354	53.487	0.53205	53.487	53.086	53.618	0	0.049757	-0.00057968	NaN	74.255	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1659900			79509	2709	55505	55597							0.06502938211713172
TLLLSNVSP	9	Unmodified	_TLLLSNVSP_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.276575	942.538597	-0.31639	-0.00014942	0.34892	0.00016479	0.032534	1.5365E-05	472.2766366269381	53.586	0.61773	53.438	52.948	53.566	-0.14723	0.001078	0.0003859	NaN	74.255	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1442900			79510	2709	55505	55597							0.06502938211713172
TLLLSNVSP	9	Unmodified	_TLLLSNVSP_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.276575	942.538597	-0.36728	-0.00017346	0.89153	0.00042105	0.52425	0.00024759	472.27694499577626	53.532	0.7038	53.396	53.134	53.837	-0.13617	-0.041458	0.00089843	NaN	74.255	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678990			79511	2709	55505	55597							0.06502938211713172
TLLLSNVSP	9	Unmodified	_TLLLSNVSP_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.276575	942.538597	-0.02647	-1.2501E-05	-0.065529	-3.0948E-05	-0.091999	-4.3449E-05	472.276393097786	53.687	0.5172	53.442	53.199	53.717	-0.2453	0.0045017	-5.5658E-06	NaN	74.255	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	930070			79512	2709	55505	55597							0.06502938211713172
TLLLSNVSP	9	Unmodified	_TLLLSNVSP_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.276575	942.538597	-0.43547	-0.00020566	0.066381	3.135E-05	-0.36909	-0.00017431	472.2764823209319	53.602	0.53069	53.405	53.089	53.619	-0.19739	-0.03238	0.00011903	NaN	74.255	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	784730			79513	2709	55505	55597							0.06502938211713172
TLLLTDMADF	10	Unmodified	_TLLLTDMADF_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.2896728515625	2	570.286282	1138.55801	4.0628	0.002317	3.3074	0.0018861	7.3702	0.0042031	570.2878920189122	17.939	0.35792	17.999	17.825	18.183	0.06036					15	7	3	0	0	0	1.1129	1	193	193		17.365	0.64758	1	46395			79514	882	55506	55598	87777	87777					-0.005724735596913888
TLLLTDMADF	10	Unmodified	_TLLLTDMADF_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	570.286282	1138.55801	2.7803	0.0015856	4.5545	0.0025974	7.3348	0.004183	570.2886879955362	17.774	0.2946	17.774	17.598	17.892	0	-0.075718	-0.00037985	NaN	17.365	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69067			79515	882	55506	55598							-0.005724735596913888
TLLLTDMADF	10	Unmodified	_TLLLTDMADF_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	570.286282	1138.55801	0.26907	0.00015345	7.0666	0.00403	7.3356	0.0041834	570.2900752064703	17.918	0.39445	17.775	17.503	17.897	-0.14278	-0.074392	0.0024853	NaN	17.365	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49124			79516	882	55506	55598							-0.005724735596913888
TLLMFSLQIS	10	Unmodified	_TLLMFSLQIS_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.8434448242188	2	576.820292	1151.62603	-1.9563	-0.0011284	-0.81564	-0.00047048	-2.7719	-0.0015989	576.8196716260185	90.261	0.74411	90.261	89.975	90.719	0					39	17	3	0	0	0	0.03519	1	11470	11470		26.693	9.2249	1	362320	+		79517	22537	55507	55599	87778	87778					0.056283960909922826
TLLMRLLLF	9	Unmodified	_TLLMRLLLF_					0	0	0			REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3473510742188	2	560.351563	1118.68857	0.50297	0.00028184	-4.3923	-0.0024612	-3.8893	-0.0021794	560.3490952765827	106	0.36078	106	105.82	106.18	0					27	16	2	0	0	0	0.88411	1	13616	13616		33.516	1.9858	1	122880	+		79518	35506	55508	55600	87779	87779					0.133975869498272
TLLNCFPPI	9	Unmodified	_TLLNCFPPI_					0	0	0			REV__ENSG00000186432|ENST00000334256|KPNA4	REV__ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.2764892578125	2	509.275521	1016.53649	0.52365	0.00026668	2.1817	0.0011111	2.7053	0.0013777	509.276541544826	70.929	1.2565	70.929	70.613	71.869	0					67	31	4	0	0	0	0.64155	1	8590	8590		50.025	4.0726	1	6719600	+		79519	27854	55509	55601	87780	87780					0.02888186202255838
TLLNHTKVL	9	Unmodified	_TLLNHTKVL_					0	0	0			REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	REV__ENST00000603363.5_1_11:75507249-75511550:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8187866210938	2	519.818941	1037.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.235	1	71.245	70.745	71.745	0.010735								0	0	0	0.32793	1	8549	8549		66.429	0.6261	1		+		79520	35895	55510	55602	87781	87781					0.10602308748320866
TLLNSTLFL	9	Unmodified	_TLLNSTLFL_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.78033447265625	2	511.30005	1020.58555	-0.41013	-0.0002097	-0.020776	-1.0623E-05	-0.43091	-0.00022032	511.29993507134293	92.986	0.7216	92.986	92.665	93.387	0					42	16	3	0	0	0	0.024319	1	11808	11808		66.429	10.925	1	535410			79521	6462	55511	55603	87782	87782					0.07607797762852897
TLLNSTLFL	9	Unmodified	_TLLNSTLFL_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.78009033203125	2	511.30005	1020.58555	-0.48131	-0.00024609	-0.19051	-9.7409E-05	-0.67182	-0.0003435	511.299880682699	92.961	0.84813	92.956	92.604	93.452	-0.0041962					33	19	2	0	0	0	0.024261	1	11760	11760		74.255	26.598	1	523470			79522	6462	55511	55603	87783	87783					0.07607797762852897
TLLNSTLFL	9	Unmodified	_TLLNSTLFL_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.7801513671875	2	511.30005	1020.58555	-0.3627	-0.00018545	-0.2906	-0.00014859	-0.6533	-0.00033403	511.29981880620176	92.984	0.76301	92.991	92.672	93.435	0.0077286					43	17	3	0	0	0	0.023635	1	11719	11719		87.754	16.459	1	653190			79523	6462	55511	55603	87784	87784					0.07607797762852897
TLLNSTLFL	9	Unmodified	_TLLNSTLFL_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.30005	1020.58555	-1.5723	-0.00080394	1.3895	0.00071046	-0.18283	-9.348E-05	511.3007315702932	92.904	0.60331	92.76	92.528	93.132	-0.14356	-0.11975	0.0015357	NaN	87.754	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62317			79524	6462	55511	55603							0.07607797762852897
TLLNSTLFL	9	Unmodified	_TLLNSTLFL_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.30005	1020.58555	-0.15522	-7.9363E-05	0.058442	2.9881E-05	-0.096777	-4.9482E-05	511.29995056745844	92.883	0.55463	92.761	92.505	93.059	-0.12242	-0.11942	0.00017454	NaN	87.754	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80528			79525	6462	55511	55603							0.07607797762852897
TLLNSTLFL	9	Unmodified	_TLLNSTLFL_					0	0	0		nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.30005	1020.58555	-0.013574	-6.9402E-06	-0.3961	-0.00020253	-0.40968	-0.00020947	511.29983668076835	92.97	0.46941	92.826	92.576	93.045	-0.14411	-0.054051	-0.00029027	NaN	87.754	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82674			79526	6462	55511	55603							0.07607797762852897
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;ENST00000538984.1_1_12:26564247-26572125:-|nuORF	nc|ENSG00000150995|Q14643-4|ITPR1;ENSG00000123104|ENST00000381340|ITPR2	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.81597900390625	2	493.815867	985.617182	-0.36914	-0.00018229	1.3384	0.00066092	0.96924	0.00047863	493.81628753058146	67.058	1.1995	66.776	66.555	67.754	-0.28149					80	29	5	0	0	0	0.72494	1	7968	7968		44.377	7.2181	1	2750100			79527	6165;3956	55512	55604	87785	87785					0.12379790516808953
TLLNVLEGW	9	Unmodified	_TLLNVLEGW_					0	0	0			REV__nc|ENSG00000183833|Q7Z4T9-2|CFAP91	REV__nc|ENSG00000183833|Q7Z4T9-2|CFAP91	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7909545898438	2	522.78985	1043.56515	0.72226	0.00037759	-1.0285	-0.00053767	-0.30621	-0.00016008	522.7891942775	70.848	0.74095	70.555	70.329	71.07	-0.29291					44	17	4	0	0	0	0.27161	1	8533	8533		79.451	2.1334	1	928390	+		79528	37006	55513	55605	87786	87786					0.04510627103036313
TLLPARGTP	9	Unmodified	_TLLPARGTP_					0	0	0		ENST00000600252.5_1_19:15219832-15221230:+|nuORF	ENST00000600252.5_1_19:15219832-15221230:+|nuORF	ENST00000600252.5_1_19:15219832-15221230:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.28759765625	2	463.276909	924.539266	0.89677	0.00041545	-0.78382	-0.00036312	0.11296	5.2331E-05	463.27644030734103	59.102	0.65538	59.188	58.884	59.54	0.085682					30	17	2	0	0	0	0.024261	1	6698	6698		45.972	0	1	682690			79529	17499	55514	55606	87787	87787					0.07397777651419801
TLLPLRVFL	9	Unmodified	_TLLPLRVFL_					0	0	0		nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3495483398438	2	536.349877	1070.6852	-0.45247	-0.00024268	0.45609	0.00024462	0.0036167	1.9398E-06	536.349932300121	87.695	1.0105	87.516	87.196	88.206	-0.17874					62	24	4	0	0	0	0.70156	1	10660	10660		45.972	3.5761	1	940730			79530	7973	55515	55607	87788	87788					0.15268660167453163
TLLPLRVFL	9	Unmodified	_TLLPLRVFL_					0	0	0		nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.349609375	2	536.349877	1070.6852	-0.55038	-0.00029519	0.41307	0.00022155	-0.1373	-7.3643E-05	536.3499720984712	87.617	1.069	87.479	87.163	88.232	-0.13734					67	25	4	0	0	0	0.70156	1	10659	10659		45.972	3.108	1	914780			79531	7973	55515	55607	87789	87789					0.15268660167453163
TLLPSPSRF	9	Unmodified	_TLLPSPSRF_					0	0	0		ENST00000553700.5_2_14:31676856-31677006:-|nuORF	ENST00000553700.5_2_14:31676856-31677006:-|nuORF	ENST00000553700.5_2_14:31676856-31677006:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.29278564453125	2	509.290017	1016.56548	0.05552	2.8276E-05	-0.52201	-0.00026586	-0.46649	-0.00023758	509.2897423396061	51.115	0.68841	50.838	50.665	51.353	-0.27643					37	17	3	0	0	0	0.024506	1	5208	5208		23.042	15.849	1	1230900			79532	16644	55516	55608	87790	87790					0.057860468229023354
TLLPSPSRF	9	Unmodified	_TLLPSPSRF_					0	0	0		ENST00000553700.5_2_14:31676856-31677006:-|nuORF	ENST00000553700.5_2_14:31676856-31677006:-|nuORF	ENST00000553700.5_2_14:31676856-31677006:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.290017	1016.56548	-0.53207	-0.00027098	-3.9468	-0.00201	-4.4788	-0.002281	509.78987645477343	51.301	0.35976	51.151	51.044	51.404	-0.14916	0.26133	-0.0032145	NaN	23.042	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130190			79533	16644	55516	55608							0.057860468229023354
TLLQRCLLV	9	Unmodified	_TLLQRCLLV_					0	0	0		WDR11-PDLIM1|1|fusion;ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000604509.5_1_10:122659587-122664224:+|nuORF	WDR11-PDLIM1|1|fusion	WDR11-PDLIM1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2744140625	2	529.823169	1057.63179	-0.35321	-0.00018714	1.9001	0.0010067	1.5469	0.00081958	529.8241043290652	46.79	0.18883	46.842	46.721	46.91	0.051395					6	4	2	0	0	0	0.024354	1	4588	4588		30.504	0	1	41412			79534	38149	55517	55609	87791	87791					0.10527539393297047
TLLRCVSPP	9	Unmodified	_TLLRCVSPP_					0	0	0			REV__nc|ENSG00000168904|Q86X40-2|LRRC28	REV__nc|ENSG00000168904|Q86X40-2|LRRC28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.76318359375	2	493.278595	984.542637	-0.67182	-0.00033139	1.6158	0.00079703	0.94397	0.00046564	493.2818684544441	74.47	0.25395	74.479	74.268	74.522	0.0096512					7	5	2	0	0	0	0.024323	1	9015	9015		53.351	9.2347	1	29360	+		79535	36910	55518	55610	87792	87792					0.04974704433777788
TLLRFRVL	8	Unmodified	_TLLRFRVL_					0	0	0		nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000392846.7_1_19:15989583-16003262:-|nuORF	nc|ENSG00000186529|Q08477-2|CYP4F3	nc|ENSG00000186529|Q08477-2|CYP4F3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.74932861328125	2	509.332019	1016.64948	-1.4061	-0.00071616	0.69324	0.00035309	-0.71284	-0.00036307	509.33227630848137	30.322	0.37187	30.322	30.137	30.508	0					11	8	2	0	0	0	0.027866	1	1929	1929		24.203	0	1	32786			79536	9559	55519	55611	87793	87793					0.141826227104616
TLLRFTLW	8	Unmodified	_TLLRFTLW_					0	0	0			REV__ENST00000512301.1_1_5:52405708-52409697:+|nuORF	REV__ENST00000512301.1_1_5:52405708-52409697:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.238037109375	2	525.310752	1048.60695	-0.87266	-0.00045842	-3.6749	-0.0019305	-4.5475	-0.0023889	525.3084464057805	44.589	0.67598	44.344	44.08	44.756	-0.2444					31	17	3	0	0	0	0.027866	1	4164	4164		23.042	0	1	795050	+		79537	33919	55520	55612	87794	87794					0.08459227582238782
TLLRLPPGL	9	Unmodified	_TLLRLPPGL_					0	0	0			REV__ENST00000584273.1_1_2:119591425-119591963:-|nuORF	REV__ENST00000584273.1_1_2:119591425-119591963:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.31829833984375	2	490.318577	978.622602	-0.22183	-0.00010877	0.59681	0.00029263	0.37498	0.00018386	490.3187052627151	67.104	1.279	67.104	66.552	67.831	0					87	31	4	0	0	0	0.75397	1	8016	8016		42.396	1.618	1	5436500	+		79538	35561	55521	55613	87795	87795					0.13243514099281128
TLLRLPPGL	9	Unmodified	_TLLRLPPGL_					0	0	0			REV__ENST00000584273.1_1_2:119591425-119591963:-|nuORF	REV__ENST00000584273.1_1_2:119591425-119591963:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.3188781738281	2	490.318577	978.622602	-0.28787	-0.00014115	0.55869	0.00027394	0.27083	0.00013279	490.31869669604754	67.167	1.207	67.191	66.728	67.935	0.023911					85	29	4	0	0	0	0.75397	1	7953	7953		42.396	0	1	5178000	+		79539	35561	55521	55613	87796	87796					0.13243514099281128
TLLRQDRSQ	9	Unmodified	_TLLRQDRSQ_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3244018554688	2	558.809636	1115.60472	-0.66865	-0.00037365	0.41081	0.00022956	-0.25784	-0.00014409	558.8116179209662	38.729	0.18729	38.63	38.514	38.702	-0.098751					6	4	2	0	0	0	0.024511	1	3238	3238		32.812	10.853	1	33171	+		79540	29199	55522	55614	87797	87797					0.051541471064638245
TLLRTTFTS	9	Unmodified	_TLLRTTFTS_					0	0	0		ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2725219726562	2	520.292756	1038.57096	-0.61521	-0.00032009	-0.93621	-0.0004871	-1.5514	-0.00080719	520.292289668606	61.414	0.62386	61.238	60.914	61.538	-0.1761					40	14	5	0	0	0	0.024466	1	6868	6868		31.53	7.0106	1	1466100			79541	11942	55523	55615	87798	87798					0.053217256147036096
TLLRTTFTS	9	Unmodified	_TLLRTTFTS_					0	0	0		ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.292756	1038.57096	-0.17279	-8.9899E-05	-0.60201	-0.00031322	-0.7748	-0.00040312	520.2924521956093	61.314	0.64961	61.314	61.032	61.682	0	0.03192	0.00032426	NaN	24.519	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1671500			79542	11942	55523	55615							0.053217256147036096
TLLRTTFTS	9	Unmodified	_TLLRTTFTS_					0	0	0		ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.292756	1038.57096	0.076254	3.9674E-05	-0.68416	-0.00035596	-0.60791	-0.00031629	520.2923590415359	61.504	0.64056	61.278	61.047	61.687	-0.22663	-0.0044953	0.00023878	NaN	24.519	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1805800			79543	11942	55523	55615							0.053217256147036096
TLLRTTFTS	9	Unmodified	_TLLRTTFTS_					0	0	0		ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	ENST00000301923.13_2_22:40725130-40725280:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.292756	1038.57096	-0.089057	-4.6336E-05	-0.91675	-0.00047698	-1.0058	-0.00052331	520.2923836831677	61.197	0.72232	61.268	60.947	61.67	0.071125	-0.014217	-3.2449E-06	NaN	24.519	38	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1713800			79544	11942	55523	55615							0.053217256147036096
TLLRVLYSK	9	Unmodified	_TLLRVLYSK_					0	0	0			REV__ENSG00000188266|ENST00000388988|HYKK	REV__ENSG00000188266|ENST00000388988|HYKK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8433227539062	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	0.82115	1	12731	12731		37.812	2.1932	1	10488000	+		79545	28025	55524	55616	87799	87799					0.12811168299458586
TLLSAGIF	8	Unmodified	_TLLSAGIF_					0	0	0			REV__ENSG00000213199|ENST00000349064|ASIC3	REV__ENSG00000213199|ENST00000349064|ASIC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5611572265625	2	411.242004	820.469455	0.34108	0.00014027	-3.2098	-0.00132	-2.8687	-0.0011797	411.2405652678288	21.109	0.62934	20.932	20.484	21.113	-0.17721					15	12	2	0	0	0	0.027866	1	578	578		42.474	0	1	21188	+		79546	28732	55525	55617	87800	87800					0.05203898982813371
TLLSAGIF	8	Unmodified	_TLLSAGIF_					0	0	0			REV__ENSG00000213199|ENST00000349064|ASIC3	REV__ENSG00000213199|ENST00000349064|ASIC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	411.242004	820.469455	0.43916	0.0001806	-3.53	-0.0014517	-3.0909	-0.0012711	411.2405827740992	21.242	0.4423	21.051	20.784	21.226	-0.19072	0.025698	-0.0012027	NaN	42.474	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22158	+		79547	28732	55525	55617							0.05203898982813371
TLLSAGIF	8	Unmodified	_TLLSAGIF_					0	0	0			REV__ENSG00000213199|ENST00000349064|ASIC3	REV__ENSG00000213199|ENST00000349064|ASIC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	411.242004	820.469455	-1.1623	-0.00047797	-1.1063	-0.00045496	-2.2686	-0.00093294	411.24136819477303	21.306	0.44366	21.094	20.773	21.216	-0.2128	0.067791	0.0007908	NaN	42.474	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36828	+		79548	28732	55525	55617							0.05203898982813371
TLLSCVREHI	10	Unmodified	_TLLSCVREHI_					0	0	0			REV__nc|ENSG00000106686|Q8N4H0-3|SPATA6L	REV__nc|ENSG00000106686|Q8N4H0-3|SPATA6L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.8185424804688	2	585.818615	1169.62268	0.20688	0.00012119	-0.72014	-0.00042187	-0.51326	-0.00030068	585.8181857204193	18.923	2.876	18.767	18.495	21.371	-0.15637					102	58	4	0	0	0	0.66532	1	358	358		69.628	11.398	1	2198100	+		79549	21636	55526	55618	87801	87801					0.04465146036955048
TLLSCVREHI	10	Unmodified	_TLLSCVREHI_					0	0	0			REV__nc|ENSG00000106686|Q8N4H0-3|SPATA6L	REV__nc|ENSG00000106686|Q8N4H0-3|SPATA6L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.819091796875	2	585.818615	1169.62268	-0.21429	-0.00012554	-0.16137	-9.4532E-05	-0.37566	-0.00022007	585.818468831878	18.987	2.9929	18.784	18.51	21.503	-0.20371					127	60	4	0	0	0	1.0122	1	348	348		44.377	6.5657	1	1770400	+		79550	21636	55526	55618	87802	87802					0.04465146036955048
TLLSNDLEADS	11	Unmodified	_TLLSNDLEADS_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;ENST00000479369.6_1_1:144864133-144875987:-|nuORF	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3428344726562	2	589.282783	1176.55101	-1.7155	-0.0010109	3.3344	0.0019649	1.6189	0.00095397	589.2843566318106	91.139	0.50041	90.99	90.853	91.353	-0.1487					24	11	3	0	0	0	0.024778	1	11210	11210		29.17	6.5904	1	155960			79551	8792	55527	55619	87803	87803					-0.030201149065533173
TLLSQWSR	8	Unmodified	_TLLSQWSR_					0	0	0			REV__ENST00000394790.2_1_10:75533209-75533281:+|nuORF	REV__ENST00000394790.2_1_10:75533209-75533281:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2845458984375	2	495.771991	989.529429	0.3013	0.00014938	-0.029375	-1.4563E-05	0.27193	0.00013481	495.7716093546343	50.111	0.49052	49.931	49.681	50.172	-0.18071					19	12	2	0	0	0	0.027866	1	5053	5053		32.812	0	1	212860	+		79552	31676	55528	55620	87804	87804					0.03424589646044751
TLLSSQLFN	9	Unmodified	_TLLSSQLFN_					0	0	0			REV__nc|ENSG00000167562|Q9NV72|ZNF701	REV__nc|ENSG00000167562|Q9NV72|ZNF701	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.7801513671875	2	511.779482	1021.54441	-0.38074	-0.00019485	1.4427	0.00073834	1.062	0.00054349	511.78026848532875	92.972	1.1025	92.98	92.629	93.732	0.0077286					54	25	3	0	0	0	0.6504	1	11719	11719		49.442	1.7842	1	788280	+		79553	36896	55529	55621	87805	87805					0.034500367233818
TLLSVSPSPF	10	Unmodified	_TLLSVSPSPF_					0	0	0			REV__ENST00000372836.4_1_6:42906550-42906796:+|nuORF	REV__ENST00000372836.4_1_6:42906550-42906796:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3036499023438	2	524.289682	1046.56481	-0.094175	-4.9375E-05	1.3893	0.0007284	1.2951	0.00067903	524.2902164147846	90.096	0.5659	90.079	89.751	90.317	-0.016708					23	13	2	0	0	0	0.03519	1	11353	11353		27.882	0	1	180980	+		79554	31218	55530	55622	87806	87806					0.04339207383191024
TLLSYSLSM	9	Unmodified	_TLLSYSLSM_					0	0	0			REV__ENSG00000279000|ENST00000641238|OR10A6	REV__ENSG00000279000|ENST00000641238|OR10A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3030700683594	2	507.762443	1013.51033	0.12761	6.4797E-05	2.0937	0.0010631	2.2213	0.0011279	507.76402132965154	57.04	0.37103	56.838	56.52	56.891	-0.20209					10	9	2	0	0	0	0.024506	1	6203	6203		30.504	0	1	149920	+		79555	29225	55531	55623	87807	87807					0.0041187224013583545
TLLTIPGSGL	10	Unmodified	_TLLTIPGSGL_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.29034423828125	2	486.292225	970.569897	-0.67395	-0.00032774	-3.3685	-0.0016381	-4.0424	-0.0019658	486.29071516082763	27.583	2.1938	27.583	27.215	29.408	0					129	55	5	0	0	0	1.0541	2	1517	1517;1541		38.806	4.6336	1	37180000	+		79556	21252	55532	55624	87808;87809	87808					0.08343511245811897
TLLTLAFLEI	10	Unmodified	_TLLTLAFLEI_					0	0	0		nc|ENSG00000163644|Q8N3J5-2|PPM1K;ENST00000506423.1_1_4:89192183-89199735:-|nuORF;ENSG00000163644|ENST00000608933|PPM1K	nc|ENSG00000163644|Q8N3J5-2|PPM1K	nc|ENSG00000163644|Q8N3J5-2|PPM1K	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3421630859375	2	567.344458	1132.67436	-0.72236	-0.00040982	-0.17389	-9.8653E-05	-0.89624	-0.00050848	567.3441556734806	106.11	0.5291	106.11	105.79	106.32	0.00014496					50	20	3	0	0	0	1.1088	1	13545	13545		31.53	2.3803	1	800480			79557	7124	55533	55625	87810	87810					0.11333213002512821
TLLTRRGGG	9	Unmodified	_TLLTRRGGG_					0	0	0			REV__ENST00000254868.8_2_17:6978245-6978371:-|nuORF	REV__ENST00000254868.8_2_17:6978245-6978371:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.7777404785156	2	465.777608	929.540663	-0.52618	-0.00024508	0.34984	0.00016295	-0.17634	-8.2136E-05	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.87448	1	9976	9976		34.173	0.65696	1	1029300	+		79558	29533	55534	55626	87811	87811					0.07307411740191583
TLLVARDN	8	Unmodified	_TLLVARDN_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2814025878906	2	451.258717	900.50288	1.1036	0.00049801	-0.67974	-0.00030674	0.42386	0.00019127	451.25838893719094	51.392	0.58207	51.21	50.945	51.527	-0.18147					21	14	2	0	0	0	0.027866	1	5256	5256		23.042	1.0826	1	176470			79559	10303	55535	55627	87812	87812					0.04864900754705559
TLLVKHELN	9	Unmodified	_TLLVKHELN_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7864990234375	2	533.816399	1065.61824	-0.80075	-0.00042745	1.141	0.00060908	0.34024	0.00018162	533.8166664341903	78.14	0.44952	78.156	77.948	78.397	0.015907					23	10	3	0	0	0	0.024344	1	9572	9572		54.776	10.399	1	258090	+		79560	27091	55536	55628	87813	87813					0.08806004885718721
TLLVVITSI	9	Unmodified	_TLLVVITSI_					0	0	0		ENST00000427960.5_1_2:190332199-190332286:+|nuORF	ENST00000427960.5_1_2:190332199-190332286:+|nuORF	ENST00000427960.5_1_2:190332199-190332286:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.27838134765625	2	479.812793	957.611034	0.713	0.00034211	-0.34624	-0.00016613	0.36676	0.00017598	479.8124288244357	96.306	0.94205	96.183	95.898	96.84	-0.12305					37	21	2	0	0	0	0.024506	1	11952	11952		30.504	0	1	172580			79561	14123	55537	55629	87814	87814					0.13053272285276307
TLLWRHALTQ	10	Unmodified	_TLLWRHALTQ_					0	0	0			REV__ENST00000473996.1_1_3:48454981-48455344:-|nuORF	REV__ENST00000473996.1_1_3:48454981-48455344:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1947326660156	3	413.571657	1237.69314	1.5385	0.00063628	-1.713	-0.00070846	-0.17454	-7.2187E-05	413.5710092109849	23.087	0.27652	22.896	22.758	23.034	-0.19117					8	5	2	0	0	0	0.03519	1	867	867		15.921	0.58318	1	12549	+		79562	33261	55538	55630	87815	87815					0.08380187416923945
TLMAFPHLS	9	Unmodified	_TLMAFPHLS_					0	0	0			REV__ENSG00000188674|ENST00000341287|C2orf80	REV__ENSG00000188674|ENST00000341287|C2orf80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.28033447265625	2	508.76532	1015.51609	-0.71249	-0.00036249	3.4183	0.0017391	2.7058	0.0013766	508.7672594510635	48.559	0.62062	48.559	48.209	48.83	0					22	17	2	0	0	0	0.024436	1	4925	4925		23.042	0	1	129460	+		79563	28052	55539	55631	87816	87816					0.008950155424486184
TLMAKVRCVL	10	Unmodified	_TLMAKVRCVL_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2689819335938	2	567.330304	1132.64606	-1.0431	-0.00059179	-2.507	-0.0014223	-3.5501	-0.0020141	567.3286052179164	40.925	0.52408	40.948	40.73	41.254	0.023003					32	14	3	0	0	0	0.03519	1	3559	3559		68.787	28.009	1	475740	+		79564	36747	55540	55632	87817	87817					0.08503868549951221
TLMDILPRI	9	Unmodified	_TLMDILPRI_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;WDR81|p.D1358N|1|0.15|ENSG00000167716|chr17:1731173-1731173|G/A|missense_variant	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8090209960938	2	536.315177	1070.6158	-0.97931	-0.00052522	1.9044	0.0010214	0.92508	0.00049613	536.3159920737367	84.62	0.53796	84.646	84.374	84.912	0.025536					22	12	2	0	0	0	0.024319	1	10554	10554		56.721	5.3856	1	341590			79565	7729	55541	55633	87818	87818					0.08331833156398716
TLMDILPRI	9	Unmodified	_TLMDILPRI_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;WDR81|p.D1358N|1|0.15|ENSG00000167716|chr17:1731173-1731173|G/A|missense_variant	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.315177	1070.6158	0.25329	0.00013584	0.17813	9.5534E-05	0.43142	0.00023138	536.3150009299958	84.579	1.0248	84.376	83.734	84.759	-0.20329	-0.15951	-0.00019443	NaN	62.107	66	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657480			79566	7729	55541	55633							0.08331833156398716
TLMDILPRI	9	Unmodified	_TLMDILPRI_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;WDR81|p.D1358N|1|0.15|ENSG00000167716|chr17:1731173-1731173|G/A|missense_variant	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.315177	1070.6158	-0.10312	-5.5305E-05	0.38315	0.00020549	0.28003	0.00015018	536.3151117898138	84.541	1.15	84.403	83.758	84.908	-0.13789	-0.13261	2.5482E-05	NaN	62.107	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	716970			79567	7729	55541	55633							0.08331833156398716
TLMDMPSP	8	Unmodified	_TLMDMPSP_					0	0	0			REV__ENST00000517503.1_3_8:144103425-144103530:+|nuORF	REV__ENST00000517503.1_3_8:144103425-144103530:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.2320861816406	2	446.201164	890.387775	-1.1197	-0.00049962	1.6233	0.0007243	0.50354	0.00022468	446.2021545300018	37.942	0.1736	37.969	37.918	38.092	0.027275					6	4	2	0	0	0	0.027866	1	3082	3082		38.806	8.3025	1	100150	+		79568	34217	55542	55634	87819	87819					-0.06180287762958869
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.8013916015625	2	530.801568	1059.58858	-0.65489	-0.00034762	0.52584	0.00027911	-0.12906	-6.8503E-05	530.8016778020369	101.26	1.3534	101.26	100.86	102.21	0					59	30	3	0	0	0	0.11848	2	12962	12962;12973		106.42	23.128	1	1388200			79569	3288	55543	55635	87820;87821	87820					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.8016357421875	2	530.801568	1059.58858	-0.46053	-0.00024445	0.39436	0.00020933	-0.066168	-3.5122E-05	530.8015988267713	101.21	1.3265	101.22	100.87	102.2	0.0090256					55	30	3	0	0	0	0.25032	2	12922	12922;12932		82.305	8.3303	1	1220200			79570	3288	55543	55635	87822;87823	87822					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.8016357421875	2	530.801568	1059.58858	0.095075	5.0466E-05	-0.15769	-8.3703E-05	-0.062617	-3.3237E-05	530.8012940731893	101.31	1.3916	101.3	100.93	102.33	-0.0054474					58	31	3	0	0	0	0.074956	2	12888	12888;12899		119.56	25.55	1	1163100			79571	3288	55543	55635	87824;87825	87824					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.80126953125	2	530.801568	1059.58858	0.32263	0.00017126	0.1004	5.329E-05	0.42303	0.00022455	530.8012604165011	101.11	0.89976	100.98	100.73	101.63	-0.13156					67	19	4	0	0	0	0.25032	3	12575	12530;12562;12575		82.305	5.49	1	1070700			79572	3288	55543	55635	87826;87827;87828	87828					0.06117304825352221
TLMEEVLLL	9	Unmodified	_TLMEEVLLL_					0	0	0		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.80126953125	2	530.801568	1059.58858	0.067051	3.5591E-05	-0.078682	-4.1765E-05	-0.011632	-6.174E-06	530.801319543455	101.17	0.88271	101	100.77	101.65	-0.17178					47	19	3	0	0	0	0.22754	2	12533	12533;12544		85.359	10.843	1	1205000			79573	3288	55543	55635	87829;87830	87829					0.06117304825352221
TLMEEVLLL	9	Oxidation (M)	_TLM(Oxidation (M))EEVLLL_		TLM(1)EEVLLL		TLM(80)EEVLLL	0	0	1		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.7991943359375	2	538.799026	1075.5835	-0.22619	-0.00012187	0.30275	0.00016312	0.076559	4.125E-05	538.7988701172369	87.331	0.63268	87.296	86.899	87.532	-0.035362					36	14	4	0	0	0	0.26797	1	10968	10968		79.939	11.152	1	1842000			79574	3288	55543	55636	87831	87831		124			0.0487300096274339
TLMEEVLLL	9	Oxidation (M)	_TLM(Oxidation (M))EEVLLL_		TLM(1)EEVLLL		TLM(68)EEVLLL	0	0	1		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.7996826171875	2	538.799026	1075.5835	0.18889	0.00010177	-0.26746	-0.00014411	-0.078575	-4.2336E-05	538.7985961325738	87.344	0.58995	87.365	87.051	87.641	0.021263					35	12	4	0	0	0	0.36105	1	10904	10904		68.485	8.1907	1	1916900			79575	3288	55543	55636	87832	87832		124			0.0487300096274339
TLMEEVLLL	9	Oxidation (M)	_TLM(Oxidation (M))EEVLLL_		TLM(1)EEVLLL		TLM(48)EEVLLL	0	0	1		nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;GOLPH3|p.H244Cfs*18|1|0.18|ENSG00000113384|chr5:32126379-32126380|GA/-|frameshift_variant;ENSG00000143457|ENST00000271732|GOLPH3L;ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2962646484375	2	538.799026	1075.5835	-0.41023	-0.00022103	0.76466	0.000412	0.35443	0.00019097	538.799150420322	87.387	0.5024	87.208	86.903	87.405	-0.17875					26	11	3	0	0	0	0.024354	1	10643	10643		47.916	7.343	1	581720			79576	3288	55543	55636	87833	87833		124			0.0487300096274339
TLMEGRLEL	9	Unmodified	_TLMEGRLEL_					0	0	0			REV__ENST00000563808.1_1_15:89424564-89438702:-|nuORF	REV__ENST00000563808.1_1_15:89424564-89438702:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.842529296875	2	531.286617	1060.55868	-0.95426	-0.00050699	-3.3382	-0.0017735	-4.2924	-0.0022805	531.2847310616228	51.57	0.58317	51.423	51.263	51.846	-0.14735					26	16	2	0	0	0	0.02435	1	5444	5444		51.335	10.557	1	2759800	+		79577	35235	55544	55637	87834	87834					0.03082365880004545
TLMERTVSL	9	Unmodified	_TLMERTVSL_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;nc|ENSG00000197712|Q8IWE2-2|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.286376953125	2	525.286617	1048.55868	-0.66247	-0.00034798	0.23242	0.00012209	-0.43005	-0.0002259	525.2864524519032	54.464	0.94976	54.328	53.897	54.847	-0.13617					63	26	4	0	0	0	0.22379	1	5790	5790		85.862	25.744	1	2615300			79578	10036	55545	55638	87835	87835					0.03634365880020596
TLMERTVSL	9	Unmodified	_TLMERTVSL_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;nc|ENSG00000197712|Q8IWE2-2|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2861328125	2	525.286617	1048.55868	-0.086169	-4.5264E-05	1.5295	0.00080341	1.4433	0.00075815	525.2861746853595	54.627	0.92722	54.396	53.964	54.891	-0.23087					65	26	4	0	0	0	0.29609	2	5809	5809;5821		76.17	22.818	1	2768000			79579	10036	55545	55638	87836;87837	87836					0.03634365880020596
TLMERTVSL	9	Unmodified	_TLMERTVSL_					0	0	0		ENSG00000197712|ENST00000358869|FAM114A1;nc|ENSG00000197712|Q8IWE2-2|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	ENSG00000197712|ENST00000358869|FAM114A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2864990234375	2	525.286617	1048.55868	0.7973	0.00041881	0.9087	0.00047733	1.706	0.00089614	525.2857721876723	54.554	1.166	54.347	53.881	55.047	-0.20613					72	31	4	0	0	0	0.28047	1	5785	5785		78.264	17.292	1	2766100			79580	10036	55545	55638	87838	87838					0.03634365880020596
TLMLCILL	8	Unmodified	_TLMLCILL_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	460.2718811035156	2	460.271393	918.528232	-0.10775	-4.9596E-05	0.22735	0.00010464	0.11959	5.5046E-05	460.27152890198664	61.236	0.77537	61.03	60.734	61.509	-0.20599					42	18	4	0	0	0	0.37803	1	6837	6837		100.27	0.89773	1	1482800	+		79581	36236	55546	55639	87839	87839					0.06570915961276569
TLMLCILL	8	Unmodified	_TLMLCILL_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2723083496094	2	460.271393	918.528232	-0.53477	-0.00024614	0.48773	0.00022449	-0.047044	-2.1653E-05	460.2716485380996	61.283	0.8149	61.026	60.732	61.547	-0.25704					39	19	3	0	0	0	0.61897	1	6836	6836		74.517	3.2209	1	1279200	+		79582	36236	55546	55639	87840	87840					0.06570915961276569
TLMLCILL	8	Unmodified	_TLMLCILL_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	460.271393	918.528232	-0.0063442	-2.9201E-06	0.27259	0.00012547	0.26625	0.00012255	460.27129646660796	61.007	0.52531	61.007	60.73	61.255	0	-0.016258	3.788E-05	NaN	100.27	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1008400	+		79583	36236	55546	55639							0.06570915961276569
TLMLCILL	8	Unmodified	_TLMLCILL_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	460.271393	918.528232	-0.024598	-1.1322E-05	-0.10867	-5.0019E-05	-0.13327	-6.1341E-05	460.2714635222633	61.267	0.83022	61.05	60.752	61.582	-0.21737	0.026105	-0.00031309	NaN	100.27	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1143400	+		79584	36236	55546	55639							0.06570915961276569
TLMLCILL	8	Unmodified	_TLMLCILL_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.271393	918.528232	-0.01703	-7.8383E-06	0.24805	0.00011417	0.23102	0.00010633	460.27135740222474	60.933	0.52518	61.005	60.751	61.276	0.071125	-0.01898	1.5293E-05	NaN	100.27	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049300	+		79585	36236	55546	55639							0.06570915961276569
TLMLCILL	8	Unmodified	_TLMLCILL_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	460.271393	918.528232	-0.10775	-4.9596E-05	0.22735	0.00010464	0.11959	5.5046E-05	460.27152890198664	61.236	0.77537	61.03	60.734	61.509	-0.20599	0.0062655	-3.7667E-06	NaN	100.27	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1482800	+		79586	36236	55546	55639							0.06570915961276569
TLMLCILL	8	Unmodified	_TLMLCILL_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|257|2|anti-sense	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	460.271393	918.528232	-0.53477	-0.00024614	0.48773	0.00022449	-0.047044	-2.1653E-05	460.2716485380996	61.283	0.8149	61.026	60.732	61.547	-0.25704	0.0028671	0.00023592	NaN	100.27	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1279200	+		79587	36236	55546	55639							0.06570915961276569
TLMNSMDPE	9	Unmodified	_TLMNSMDPE_					0	0	0		ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.800537109375	2	519.217543	1036.42053	-0.86372	-0.00044846	1.0579	0.00054927	0.19416	0.00010081	519.2179921737724	52.035	0.35967	52.127	52.003	52.363	0.091942					13	8	2	0	0	0	0.024457	1	5473	5473		29.15	0	1	101580			79588	4166	55547	55640	87841	87841					-0.09622125430746564
TLMRDERA	8	Unmodified	_TLMRDERA_					0	0	0		ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.26947021484375	2	496.253108	990.491664	-0.86994	-0.00043171	-2.8786	-0.0014285	-3.7486	-0.0018602	496.25124600589356	39.403	0.78912	39.304	39.054	39.844	-0.098751					44	21	4	0	0	0	0.027866	1	3449	3449		42.396	3.1433	1	757940			79589	10455	55548	55641	87842	87842					-0.003962446110790552
TLMRDERA	8	Unmodified	_TLMRDERA_					0	0	0		ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	ENSG00000205922|ENST00000382349|ONECUT3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.253108	990.491664	-0.73093	-0.00036273	-3.3964	-0.0016855	-4.1273	-0.0020482	496.2513452656497	39.482	0.77486	39.506	39.277	40.052	0.023727	0.11701	0.00063361	NaN	42.396	39	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	741250			79590	10455	55548	55641							-0.003962446110790552
TLMSEALAR	9	Unmodified	_TLMSEALAR_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.26947021484375	2	496.265684	990.516816	-0.86906	-0.00043128	0.81145	0.0004027	-0.057608	-2.8589E-05	496.2659665253618	39.385	1.2163	39.286	38.737	39.953	-0.098755					56	33	2	0	0	0	0.024021	1	3449	3449		32.812	1.2826	1	2631100	+		79591	24090	55549	55642	87843	87843					0.021178101914983927
TLMSEALAR	9	Unmodified	_TLMSEALAR_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.265684	990.516816	-0.72581	-0.0003602	0.71462	0.00035464	-0.011188	-5.5525E-06	496.265928254802	39.52	1.0643	39.544	39.099	40.163	0.023727	0.13179	0.00034656	NaN	32.812	55	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2758300	+		79592	24090	55549	55642							0.021178101914983927
TLMSLEIIW	9	Unmodified	_TLMSLEIIW_					0	0	0		ENST00000338733.9_1_3:186282087-186282159:-|nuORF	ENST00000338733.9_1_3:186282087-186282159:-|nuORF	ENST00000338733.9_1_3:186282087-186282159:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.2614135742188	2	553.301736	1104.58892	-0.9719	-0.00053775	2.8473	0.0015754	1.8754	0.0010377	553.3031345634381	44.784	0.43428	44.684	44.472	44.906	-0.099449					19	10	2	0	0	0	0.024506	1	4212	4212		23.042	10.836	1	219070			79593	12444	55550	55643	87844	87844					0.040807245452015195
TLNAGVITLN	10	Unmodified	_TLNAGVITLN_					0	0	0			REV__ENSG00000261594|ENST00000562197|TPBGL	REV__ENSG00000261594|ENST00000562197|TPBGL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3057861328125	2	508.292756	1014.57096	0.21951	0.00011158	2.26	0.0011487	2.4795	0.0012603	508.29342011201464	98.272	0.33307	98.282	98.105	98.439	0.010231					10	7	2	0	0	0	0.03519	1	12521	12521		54.722	5.1863	1	29645	+		79594	29115	55551	55644	87845	87845					0.06425725614701605
TLNCYSLEI	9	Unmodified	_TLNCYSLEI_					0	0	0		ENST00000361028.5_1_6:28350065-28350296:-|nuORF	ENST00000361028.5_1_6:28350065-28350296:-|nuORF	ENST00000361028.5_1_6:28350065-28350296:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2802124023438	2	528.257525	1054.5005	-0.918	-0.00048494	-0.57606	-0.00030431	-1.4941	-0.00078925	528.2569301223103	69.208	1.046	68.946	68.706	69.752	-0.26166					41	24	3	0	0	0	0.024209	1	8013	8013		56.721	0	1	238700			79595	12783	55552	55645	87846	87846					-0.024573157652639566
TLNDREYQL	9	Unmodified	_TLNDREYQL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.2869262695312	2	576.288202	1150.56185	-1.2851	-0.00074057	0.71949	0.00041464	-0.56557	-0.00032593	576.2885885146723	47.447	1.5087	47.447	47.076	48.585	0					98	44	4	0	0	0	0.030064	3	4743	4743;4755;4767		141.52	58.77	1	8293700			79596	1781	55553	55646	87847;87848;87849	87847					-0.007406677416156526
TLNDREYQL	9	Unmodified	_TLNDREYQL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.287841796875	2	576.288202	1150.56185	-0.05709	-3.29E-05	-0.71047	-0.00040943	-0.76756	-0.00044233	576.2878237836882	47.6	1.3434	47.447	47.125	48.469	-0.15301					102	39	5	0	0	0	0.025498	3	4772	4748;4760;4772		145.16	59.995	1	8237700			79597	1781	55553	55646	87850;87851;87852	87852					-0.007406677416156526
TLNDREYQL	9	Unmodified	_TLNDREYQL_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.2876586914062	2	576.288202	1150.56185	-1.2646	-0.00072875	0.48584	0.00027998	-0.77873	-0.00044877	576.2885109468556	47.383	1.3013	47.442	47.069	48.37	0.059097					88	37	4	0	0	0	0.030064	3	4686	4676;4686;4697		141.52	58.77	1	9313600			79598	1781	55553	55646	87853;87854;87855	87854					-0.007406677416156526
TLNEKLTAL	9	Unmodified	_TLNEKLTAL_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.7950744628906	2	501.795132	1001.57571	-0.46268	-0.00023217	0.052873	2.6531E-05	-0.40981	-0.00020564	501.7950930678343	52.407	1.5403	52.288	51.939	53.479	-0.11875					117	39	5	0	0	0	0.013337	5	5434	5424;5434;5446;5458;5476		176.44	48.983	1	14844000			79599	10887	55554	55647	87856;87857;87858;87859;87860	87857					0.07498609757453778
TLNEKLTAL	9	Unmodified	_TLNEKLTAL_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.794921875	2	501.795132	1001.57571	-0.20649	-0.00010362	-0.222	-0.0001114	-0.42849	-0.00021502	501.7949473905708	52.642	1.5499	52.383	52.028	53.578	-0.25839					107	40	5	0	0	0	0.015032	4	5475	5453;5463;5475;5494		190.26	50.291	1	15789000			79600	10887	55554	55647	87861;87862;87863;87864	87863					0.07498609757453778
TLNEKLTAL	9	Unmodified	_TLNEKLTAL_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7948913574219	2	501.795132	1001.57571	-0.40745	-0.00020445	0.24009	0.00012048	-0.16736	-8.3978E-05	501.79512696947097	52.501	1.5393	52.311	51.957	53.496	-0.18982					109	39	4	0	0	0	0.014034	3	5445	5434;5445;5464		166.68	46.305	1	8831600			79601	10887	55554	55647	87865;87866;87867	87866					0.07498609757453778
TLNERFIF	8	Unmodified	_TLNERFIF_					0	0	0			REV__ENSG00000157570|ENST00000520358|TSPAN18	REV__ENSG00000157570|ENST00000520358|TSPAN18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2638549804688	2	520.282192	1038.54983	-0.70575	-0.00036719	-1.8452	-0.00096003	-2.551	-0.0013272	520.2847200981573	56.299	0.78518	56.299	55.858	56.643	0					30	21	3	0	0	0	0.027866	1	6309	6309		42.474	0	1	177760	+		79602	25137	55555	55648	87868	87868					0.03209760305844611
TLNHVLIW	8	Unmodified	_TLNHVLIW_					0	0	0		TAAR1|p.D287H|1|0.18|ENSG00000146399|chr6:132645145-132645145|C/G|missense_variant	TAAR1|p.D287H|1|0.18|ENSG00000146399|chr6:132645145-132645145|C/G|missense_variant	TAAR1|p.D287H|1|0.18|ENSG00000146399|chr6:132645145-132645145|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.2852783203125	2	498.287277	994.560001	-0.77985	-0.00038859	-3.7066	-0.001847	-4.4864	-0.0022355	498.28539627479165	34.531	0.86995	34.355	34.089	34.959	-0.17557					64	21	4	0	0	0	0.40853	1	2554	2554		96.048	12.761	1	4801900			79603	38052	55556	55649	87869	87869					0.06250368031078324
TLNIRRPLV	9	Unmodified	_TLNIRRPLV_					0	0	0		nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6;ENST00000478668.1_1_1:168014424-168033024:+|nuORF	nc|ENSG00000143164|Q58WW2|DCAF6	nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.805419921875	2	541.345658	1080.67676	-0.83964	-0.00045454	0.43226	0.000234	-0.40739	-0.00022054	541.3458012288071	53.05	0.82932	53.05	52.789	53.618	0					43	22	3	0	0	0	0.024457	1	5686	5686		37.159	2.9866	1	955250			79604	5616	55557	55650	87870	87870					0.139651062508392
TLNKRGIED	9	Unmodified	_TLNKRGIED_					0	0	0			REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3106689453125	2	523.285463	1044.55637	-0.39438	-0.00020637	2.4219	0.0012673	2.0275	0.001061	523.2872420960587	31.646	0.91742	31.715	31.366	32.284	0.06896					48	22	5	0	0	0	0.024021	1	2142	2142		79.451	13.022	1	437360	+		79605	36808	55558	55651	87871	87871					0.03587653466570373
TLNKRGIED	9	Unmodified	_TLNKRGIED_					0	0	0			REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	REV__nc|ENSG00000156787|Q96DN5-3|TBC1D31	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.285463	1044.55637	-0.51289	-0.00026839	7.1953	0.0037652	6.6824	0.0034968	523.2891699035074	31.76	0.35794	31.772	31.545	31.902	0.011797	0.028575	0.00049101	NaN	79.451	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393930	+		79606	36808	55558	55651							0.03587653466570373
TLNKVAMK	8	Unmodified	_TLNKVAMK_					0	0	0		ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2;ENSG00000181789|ENST00000314797|COPG1	ENSG00000158623|ENST00000425248|COPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24212646484375	2	452.767863	903.521173	0.48477	0.00021949	2.1779	0.00098608	2.6627	0.0012056	452.76897358261095	53.777	0.18028	53.777	53.618	53.799	0					7	4	2	0	0	0	0.027866	1	5827	5827		7.1934	3.2081	1	188060			79607	6690;9070	55559	55652	87872	87872					0.065553194050608
TLNKYGIEW	9	Unmodified	_TLNKYGIEW_					0	0	0			REV__TRMT10C|p.N348Y|1|0.22|ENSG00000174173|chr3:101565823-101565823|A/T|missense_variant	REV__TRMT10C|p.N348Y|1|0.22|ENSG00000174173|chr3:101565823-101565823|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.27685546875	2	562.292756	1122.57096	0.33355	0.00018755	-0.33926	-0.00019077	-0.0057153	-3.2137E-06	562.293311821051	81.947	0.34025	81.718	81.479	81.819	-0.22891					16	7	3	0	0	0	0.024506	1	9847	9847		38.806	16.846	1	47780	+		79608	37732	55560	55653	87873	87873					0.014577256147049411
TLNLDTLNG	9	Unmodified	_TLNLDTLNG_					0	0	0			REV__ENSG00000166897|ENST00000402918|ELFN2	REV__ENSG00000166897|ENST00000402918|ELFN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2926025390625	2	480.753464	959.492375	-0.10742	-5.1641E-05	-2.0117	-0.00096715	-2.1191	-0.0010188	480.75239424493606	55.956	0.39805	55.739	55.447	55.845	-0.21607					19	10	2	0	0	0	0.024447	1	6043	6043		49.442	28.495	1	205160	+		79609	26076	55561	55654	87874	87874					0.011008733096218748
TLNLKFMAE	9	Unmodified	_TLNLKFMAE_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.8073120117188	2	533.78371	1065.55287	-0.43433	-0.00023184	1.4956	0.0007983	1.0612	0.00056646	533.7844003270658	58.347	0.39272	58.157	57.946	58.338	-0.19018					16	9	2	0	0	0	0.024539	1	6422	6422		35.618	12.576	1	1012000			79610	7622	55562	55655	87875	87875					0.02271267368359986
TLNLKKMF	8	Unmodified	_TLNLKKMF_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2;REV__CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7884521484375	2	497.791338	993.568123	-0.40301	-0.00020062	-2.076	-0.0010334	-2.479	-0.001234	497.7904500182141	21.697	0.23099	21.607	21.499	21.73	-0.090094					6	4	2	0	0	0	0.027866	1	686	686		40.778	0	1	21313	+		79611	22403;19252	55563	55656	87876	87876					0.07108178956207212
TLNLLIDLHS	10	Unmodified	_TLNLLIDLHS_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.31103515625	2	569.826963	1137.63937	-0.18763	-0.00010692	-0.85143	-0.00048517	-1.0391	-0.00059209	569.8265652341078	31.383	0.14589	31.198	31.099	31.245	-0.18503					5	3	2	0	0	0	0.03519	1	2068	2068		34.173	20.718	1	107490	+		79612	25493	55564	55657	87877	87877					0.07605970194572365
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.8023681640625	2	538.802957	1075.59136	-0.4154	-0.00022382	-0.4631	-0.00024952	-0.8785	-0.00047334	538.8026564013173	93.815	3.0985	93.815	93.429	96.527	0					196	73	5	0	0	0	0.013065	5	11919	11897;11907;11919;11930;11942		171.53	27.422	1	13183000			79613	3516	55565	55658	87878;87879;87880;87881;87882	87880					0.05658896274530889
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.8026123046875	2	538.802957	1075.59136	-0.89027	-0.00047968	0.11297	6.0868E-05	-0.7773	-0.00041881	538.8029556954763	93.73	2.3545	93.726	93.41	95.765	-0.0042038					175	55	5	0	0	0	0.013065	7	11872	11872;11885;11897;11909;11923;11934;11947		195.81	52.707	1	13207000			79614	3516	55565	55658	87883;87884;87885;87886;87887;87888;87889	87883					0.05658896274530889
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.802490234375	2	538.802957	1075.59136	-1.1978	-0.00064539	0.45553	0.00024544	-0.74228	-0.00039994	538.8031436333358	93.829	2.7283	93.834	93.391	96.119	0.0059814					181	64	5	0	0	0	0.014034	3	11868	11820;11844;11868		166.68	23.572	1	13029000			79615	3516	55565	55658	87890;87891;87892	87892					0.05658896274530889
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.8025512695312	2	538.802957	1075.59136	-0.086687	-4.6707E-05	-0.31401	-0.00016919	-0.4007	-0.0002159	538.8026445515942	93.684	1.7077	93.562	93.234	94.942	-0.12215					106	39	4	0	0	0	0.096521	1	11549	11549		111.65	0	1	3274100			79616	3516	55565	55658	87893	87893					0.05658896274530889
TLNNLEIFL	9	Unmodified	_TLNNLEIFL_					0	0	0		nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6	nc|ENSG00000116062|P52701-2|MSH6	nc|ENSG00000116062|P52701-2|MSH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.8026123046875	2	538.802957	1075.59136	-0.88387	-0.00047623	0.52215	0.00028133	-0.36172	-0.0001949	538.8030703617362	93.776	1.626	93.628	93.217	94.843	-0.14758					107	37	4	0	0	0	0.096521	3	11552	11539;11552;11565		111.65	10.903	1	3298000			79617	3516	55565	55658	87894;87895;87896	87895					0.05658896274530889
TLNNNSLDL	9	Unmodified	_TLNNNSLDL_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2744445800781	2	502.256371	1002.49819	-0.27921	-0.00014023	-1.6044	-0.00080581	-1.8836	-0.00094604	502.7566305560877	48.781	0.89904	48.781	48.277	49.176	0					48	25	3	0	0	0	0.022411	1	4963	4963		101.6	0	1	353220	+		79618	22899	55566	55659	87897	87897					-0.0029602817870681974
TLNNNSLDL	9	Unmodified	_TLNNNSLDL_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2744140625	2	502.256371	1002.49819	-0.52676	-0.00026457	-4.0689	-0.0020436	-4.5957	-0.0023082	502.2549758840925	48.646	0.78717	48.713	48.301	49.089	0.066795					38	21	3	0	0	0	0.023239	1	4871	4871		74.255	0	1	269460	+		79619	22899	55566	55659	87898	87898					-0.0029602817870681974
TLNNWLATV	9	Unmodified	_TLNNWLATV_					0	0	0		ENSG00000130204|ENST00000426677|TOMM40;nc|ENSG00000130204|O96008-2|TOMM40;ENST00000506026.1_1_5:33502626-33502971:+|nuORF	ENSG00000130204|ENST00000426677|TOMM40	ENSG00000130204|ENST00000426677|TOMM40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2798461914062	2	516.279649	1030.54475	0.39657	0.00020474	-0.14914	-7.6998E-05	0.24744	0.00012775	516.2794157860369	82.52	1.5141	82.3	81.871	83.385	-0.22015					87	34	4	0	0	0	0.013995	4	9932	9923;9932;9945;9959		181.81	42.702	1	1948900			79620	4396	55567	55660	87899;87900;87901;87902	87900					0.030694564432451443
TLNNWLATV	9	Unmodified	_TLNNWLATV_					0	0	0		ENSG00000130204|ENST00000426677|TOMM40;nc|ENSG00000130204|O96008-2|TOMM40;ENST00000506026.1_1_5:33502626-33502971:+|nuORF	ENSG00000130204|ENST00000426677|TOMM40	ENSG00000130204|ENST00000426677|TOMM40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2798461914062	2	516.279649	1030.54475	0.2513	0.00012974	-0.24717	-0.00012761	0.0041368	2.1357E-06	516.2793825595994	82.475	1.6649	82.294	81.941	83.606	-0.18079					88	38	4	0	0	0	0.014918	3	9946	9935;9946;9958		190.52	57.76	1	2072500			79621	4396	55567	55660	87903;87904;87905	87904					0.030694564432451443
TLNNWLATV	9	Unmodified	_TLNNWLATV_					0	0	0		ENSG00000130204|ENST00000426677|TOMM40;nc|ENSG00000130204|O96008-2|TOMM40;ENST00000506026.1_1_5:33502626-33502971:+|nuORF	ENSG00000130204|ENST00000426677|TOMM40	ENSG00000130204|ENST00000426677|TOMM40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2797241210938	2	516.279649	1030.54475	-0.56051	-0.00028938	0.62514	0.00032275	0.064632	3.3368E-05	516.2798149215926	82.458	1.756	82.318	81.956	83.712	-0.14014					101	40	4	0	0	0	0.013094	3	9936	9914;9925;9936		171.38	80.608	1	1754600			79622	4396	55567	55660	87906;87907;87908	87908					0.030694564432451443
TLNRMTCKE	9	Carbamidomethyl (C),Oxidation (M)	_TLNRM(Oxidation (M))TC(Carbamidomethyl (C))KE_	TLNRMTC(1)KE	TLNRM(1)TCKE	TLNRMTC(74)KE	TLNRM(74)TCKE	0	1	1		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.7781372070312	2	584.77609	1167.53763	-1.0556	-0.0006173	4.1437	0.0024232	3.0881	0.0018059	584.7784679284031	42.842	1.3036	42.616	41.936	43.24	-0.22597					55	34	2	0	0	0	0.31037	1	3887	3887		74.255	17.821	1	3077700			79623	8799	55568	55661	87909	87909	107	369			-0.03943967491136391
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	438.2454528808594	2	438.245275	874.475997	0.21392	9.3748E-05	-0.070822	-3.1037E-05	0.1431	6.2711E-05	438.24514457383975	51.898	0.91258	51.898	51.6	52.513	0					59	24	4	0	0	0	0.013887	3	5529	5529;5540;5555		180.93	60.305	1	3767000			79624	3419	55569	55662	87910;87911;87912	87910					0.033737921435204044
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	438.2452087402344	2	438.245275	874.475997	-0.11482	-5.0318E-05	0.28429	0.00012459	0.16947	7.427E-05	438.2452753946901	52.034	0.82921	51.886	51.577	52.406	-0.14735					51	22	4	0	0	0	0.013065	3	5536	5525;5536;5549		171.53	41.849	1	3817300			79625	3419	55569	55662	87913;87914;87915	87914					0.033737921435204044
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	438.24530029296875	2	438.245275	874.475997	-0.64129	-0.00028104	0.76202	0.00033395	0.12073	5.2911E-05	438.2454735531063	51.74	1.0196	51.827	51.577	52.597	0.087006					62	26	4	0	0	0	0.013887	2	5438	5438;5450		180.93	60.305	1	3334500			79626	3419	55569	55662	87916;87917	87916					0.033737921435204044
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	438.245275	874.475997	-0.46093	-0.000202	0.36745	0.00016103	-0.093484	-4.0969E-05	438.2453309067103	51.973	0.82417	51.854	51.575	52.4	-0.11875	-0.03955	4.2041E-05	NaN	171.53	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1670900			79627	3419	55569	55662							0.033737921435204044
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	438.245275	874.475997	-1.8385	-0.0008057	1.8734	0.000821	0.034915	1.5301E-05	438.2459597069417	52.2	0.81583	51.931	51.656	52.471	-0.26904	0.03735	0.001362	NaN	171.53	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1589900			79628	3419	55569	55662							0.033737921435204044
TLNSAAVTV	9	Unmodified	_TLNSAAVTV_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	438.245275	874.475997	0.49477	0.00021683	-0.73455	-0.00032191	-0.23978	-0.00010508	438.2448497984362	52.149	0.75579	51.965	51.598	52.354	-0.18404	0.071596	-0.00092385	NaN	171.53	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1427300			79629	3419	55569	55662							0.033737921435204044
TLNVDPKPQ	9	Unmodified	_TLNVDPKPQ_					0	0	0			REV__ENSG00000110002|ENST00000456829|VWA5A	REV__ENSG00000110002|ENST00000456829|VWA5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8422546386719	2	506.277106	1010.53966	-0.13978	-7.0768E-05	0.50305	0.00025468	0.36327	0.00018392	506.2770188583945	65.261	0.70002	65.298	65.045	65.745	0.037376					30	19	2	0	0	0	0.024374	1	7705	7705		32.812	0	1	641610	+		79630	21829	55570	55663	87918	87918					0.034811525806162535
TLNYVVTTE	9	Unmodified	_TLNYVVTTE_					0	0	0			REV__RNF217-TPD52L1|3|fusion;REV__ENSG00000146373|ENST00000521654|RNF217	REV__RNF217-TPD52L1|3|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3133544921875	2	520.268947	1038.52334	-0.25168	-0.00013094	-1.2771	-0.00066443	-1.5288	-0.00079537	520.2680963485828	71.001	0.47021	71.012	70.769	71.239	0.010735					23	11	3	0	0	0	0.024427	1	8490	8490		42.396	15.703	1	436150	+		79631	37446;24480	55571	55664	87919	87919					0.005620266238793192
TLPAAGDWPV	10	Unmodified	_TLPAAGDWPV_					0	0	0			REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2687377929688	2	513.766374	1025.5182	0.20484	0.00010524	-1.2491	-0.00064177	-1.0443	-0.00053653	513.7658480736354	79.335	0.5795	79.116	78.706	79.285	-0.21922					32	13	4	0	0	0	0.03519	1	9511	9511		9.7057	6.2956	1	328300	+		79632	31103	55572	55665	87920	87920					0.006457675518731776
TLPAAGDWPV	10	Unmodified	_TLPAAGDWPV_					0	0	0			REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.766374	1025.5182	0.17319	8.8977E-05	-1.1499	-0.00059079	-0.97674	-0.00050182	513.7657249973631	79.228	0.41557	79.078	78.821	79.236	-0.15051	-0.019013	3.9679E-05	NaN	14.865	34	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474480	+		79633	31103	55572	55665							0.006457675518731776
TLPAGVHVQA	10	Unmodified	_TLPAGVHVQA_					0	0	0		ENST00000565382.1_1_16:84150699-84150948:+|nuORF	ENST00000565382.1_1_16:84150699-84150948:+|nuORF	ENST00000565382.1_1_16:84150699-84150948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.8214111328125	2	496.779816	991.545079	-0.19467	-9.671E-05	-0.55858	-0.00027749	-0.75325	-0.0003742	496.77938899728207	43.041	1.3333	42.902	42.312	43.645	-0.13929					73	36	3	0	0	0	0.03519	1	3893	3893		32.812	1.2826	1	2128800			79634	16916	55573	55666	87921	87921					0.048968761630817426
TLPAGVHVQA	10	Unmodified	_TLPAGVHVQA_					0	0	0		ENST00000565382.1_1_16:84150699-84150948:+|nuORF	ENST00000565382.1_1_16:84150699-84150948:+|nuORF	ENST00000565382.1_1_16:84150699-84150948:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.8214111328125	2	496.779816	991.545079	-0.15028	-7.4657E-05	2.3145	0.0011498	2.1643	0.0010752	496.7793641536161	42.309	0.5058	42.177	41.985	42.491	-0.13219					27	14	3	0	0	0	0.03519	1	3893	3893		32.812	1.2826	1	167340			79635	16916	55573	55666	87922	87922					0.048968761630817426
TLPCKKYF	8	Unmodified	_TLPCKKYF_					0	0	0			REV__nc|ENSG00000116106|P54764-2|EPHA4	REV__nc|ENSG00000116106|P54764-2|EPHA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.77044677734375	2	500.270238	998.525924	-0.37618	-0.00018819	-1.5491	-0.00077497	-1.9253	-0.00096317	500.7700404947614	39.334	1.6824	39.108	38.736	40.419	-0.2257					126	44	6	0	0	0	0.91239	1	3315	3315		50.025	4.0726	1	27495000	+		79636	22256	55574	55667	87923	87923					0.02660203547816309
TLPDHFNQL	9	Unmodified	_TLPDHFNQL_					0	0	0			REV__ENSG00000149289|ENST00000278590|ZC3H12C	REV__ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.3081665039062	2	542.774731	1083.53491	-1.6268	-0.00088298	4.104	0.0022275	2.4772	0.0013446	542.7757618170073	80.326	0.25157	80.174	80.049	80.301	-0.15168					8	5	2	0	0	0	0.024427	1	9939	9939		26.693	10.22	1	34159	+		79637	24667	55575	55668	87924	87924					-0.0035173156215932977
TLPDVLLVI	9	Unmodified	_TLPDVLLVI_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;ENST00000480128.1_1_12:46231109-46233281:+|nuORF;ENST00000479608.5_1_12:46230576-46239804:+|nuORF;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.81280517578125	2	491.812793	981.611034	-0.10352	-5.0914E-05	0.60187	0.00029601	0.49834	0.00024509	491.81270729613976	101.98	1.135	101.98	101.6	102.73	0					54	25	3	0	0	0	0.70186	1	13063	13063		45.952	3.4775	1	321380			79638	127;9786	55576	55669	87925	87925					0.11949272285278312
TLPELGAHIL	10	Unmodified	_TLPELGAHIL_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2796630859375	2	532.310949	1062.60735	-0.20927	-0.0001114	-2.4963	-0.0013288	-2.7055	-0.0014402	532.3101255576352	81.401	0.53681	81.207	80.882	81.419	-0.19334					17	12	2	0	0	0	0.03519	1	9750	9750		71.296	7.9894	1	41846	+		79639	28289	55577	55670	87926	87926					0.0785460251142922
TLPFRAALAGL	11	Unmodified	_TLPFRAALAGL_					0	0	0			REV__ENST00000348261.10_1_16:1271144-1271678:+|nuORF	REV__ENST00000348261.10_1_16:1271144-1271678:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7642822265625	2	565.340041	1128.66553	-0.3265	-0.00018459	3.3562	0.0018974	3.0297	0.0017128	565.3417212900455	76.874	0.8842	76.706	76.095	76.98	-0.16853					43	20	3	0	0	0	0.024787	1	9111	9111		20.837	0	1	327240	+		79640	30711	55578	55671	87927	87927					0.1063428415668568
TLPFTYTAE	9	Unmodified	_TLPFTYTAE_					0	0	0		ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15;nc|ENSG00000141497|Q9H091-2|ZMYND15;ENST00000574829.5_1_17:4643771-4647168:+|nuORF	ENSG00000141497|ENST00000433935|ZMYND15	ENSG00000141497|ENST00000433935|ZMYND15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.7666015625	2	521.758215	1041.50188	-0.39895	-0.00020816	-4.3813	-0.002286	-4.7803	-0.0024941	521.7534875963618	47.746	0.51978	47.593	47.371	47.891	-0.15301					35	15	3	0	0	0	0.022924	1	4789	4789		63.306	2.3343	1	1600500			79641	5497	55579	55672	87928	87928					-0.017213584048704433
TLPFWTCSL	9	Unmodified	_TLPFWTCSL_					0	0	0			REV__ENST00000483039.5_1_17:7461620-7463377:+|nuORF	REV__ENST00000483039.5_1_17:7461620-7463377:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8131103515625	2	534.265153	1066.51575	0.0047765	2.5519E-06	-3.7049	-0.0019794	-3.7001	-0.0019768	534.2630948047256	54.079	0.55118	54.177	53.907	54.458	0.098015					20	11	2	0	0	0	0.024436	1	5850	5850		23.042	0	1	287820	+		79642	33500	55580	55673	87929	87929					-0.01484404177426768
TLPFWTCSL	9	Unmodified	_TLPFWTCSL_					0	0	0			REV__ENST00000483039.5_1_17:7461620-7463377:+|nuORF	REV__ENST00000483039.5_1_17:7461620-7463377:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.265153	1066.51575	-0.38111	-0.00020361	-3.0812	-0.0016462	-3.4623	-0.0018498	534.263540459772	54.387	0.42435	54.238	54.018	54.442	-0.14941	0.010586	7.1872E-05	NaN	16.473	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260370	+		79643	33500	55580	55673							-0.01484404177426768
TLPGQEGKPK	10	Unmodified	_TLPGQEGKPK_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.7694091796875	2	527.798206	1053.58186	-0.41549	-0.00021929	-0.12348	-6.5173E-05	-0.53897	-0.00028447	527.7979094833711	39.784	0.85271	39.784	39.495	40.347	0					49	23	3	0	0	0	0.03519	1	3529	3529		34.173	0	1	997530	+		79644	27914	55581	55674	87930	87930					0.057211279889770594
TLPGQEGKPK	10	Unmodified	_TLPGQEGKPK_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7698364257812	2	527.798206	1053.58186	-1.1988	-0.00063272	0.81814	0.00043181	-0.38065	-0.00020091	527.7984562954402	39.803	0.9148	39.691	39.398	40.312	-0.11223					50	24	3	0	0	0	0.03519	1	3519	3519		34.173	21.966	1	943450	+		79645	27914	55581	55674	87931	87931					0.057211279889770594
TLPHECEPD	9	Unmodified	_TLPHECEPD_					0	0	0			REV__ENSG00000116183|ENST00000367662|PAPPA2;REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__ENSG00000116183|ENST00000367662|PAPPA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.766845703125	2	520.721307	1039.42806	0.21824	0.00011364	0.063092	3.2853E-05	0.28133	0.0001465	520.7223207497569	47.65	0.2428	47.463	47.318	47.561	-0.18684					13	6	3	0	0	0	0.024436	1	4659	4659		30.504	3.7075	1	159780	+		79646	22264;36588	55582	55675	87932	87932					-0.0900764983884983
TLPHLSAVAV	10	Unmodified	_TLPHLSAVAV_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2934875488281	2	504.297842	1006.58113	-0.31658	-0.00015965	-1.8243	-0.00091999	-2.1409	-0.0010796	504.29633338861873	61.589	1.2254	61.589	60.996	62.222	0					90	32	5	0	0	0	0.55296	1	7111	7111		82.305	18.999	1	15843000	+		79647	26519	55583	55676	87933	87933					0.0781033333993264
TLPILLHLLI	10	Unmodified	_TLPILLHLLI_					0	0	0			REV__ENST00000331835.9_2_1:87328833-87328956:-|nuORF	REV__ENST00000331835.9_2_1:87328833-87328956:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2791137695312	2	573.38646	1144.75837	0.066264	3.7995E-05	-3.2548	-0.0018663	-3.1885	-0.0018283	573.8852407908773	77.779	0.37761	77.517	77.399	77.777	-0.26202					11	8	2	0	0	0	0.03519	1	9289	9289		11.511	0	1	72187	+		79648	30483	55584	55677	87934	87934					0.1917778889010151
TLPIYEASTP	10	Unmodified	_TLPIYEASTP_					0	0	0			REV__ENSG00000101216|ENST00000370077|GMEB2	REV__ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3163452148438	2	546.284597	1090.55464	-0.067594	-3.6925E-05	2.5939	0.001417	2.5263	0.0013801	546.285671477675	85.76	2.2519	85.623	84.577	86.829	-0.13752					110	52	3	0	0	0	0.03519	1	10544	10544		13.454	0	1	556970	+		79649	21203	55585	55678	87935	87935					0.012985996579345738
TLPKSRKGR	9	Unmodified	_TLPKSRKGR_					0	0	0			REV__ENST00000335281.8_1_14:52327211-52327289:+|nuORF	REV__ENST00000335281.8_1_14:52327211-52327289:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.2825927734375	2	521.827632	1041.64071	0.12033	6.2791E-05	-1.6479	-0.00085994	-1.5276	-0.00079715	521.8265272280165	22.25	0.28021	22.061	21.911	22.191	-0.18894					7	5	2	0	0	0	0.024541	1	760	760		17.365	0	1	13718	+		79650	30529	55586	55679	87936	87936					0.12155649073997665
TLPLILGLI	9	Unmodified	_TLPLILGLI_					0	0	0		nc|ENSG00000125869|Q9UJQ1-2|LAMP5;ENSG00000125869|ENST00000246070|LAMP5	nc|ENSG00000125869|Q9UJQ1-2|LAMP5	nc|ENSG00000125869|Q9UJQ1-2|LAMP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.8260192871094	2	476.825704	951.636855	0.47667	0.00022729	-0.24161	-0.00011521	0.23506	0.00011208	476.82550989564135	106.19	0.45373	106.19	105.95	106.41	-0.0013199					25	14	2	0	0	0	1.0597	1	13585	13585		8.2313	0	1	358320			79651	4156	55587	55680	87937	87937					0.1591016652756707
TLPLLETKP	9	Unmodified	_TLPLLETKP_					0	0	0		ENST00000568432.1_1_15:42551169-42553190:-|nuORF	ENST00000568432.1_1_15:42551169-42553190:-|nuORF	ENST00000568432.1_1_15:42551169-42553190:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7883605957031	2	506.307875	1010.6012	-0.47229	-0.00023913	4.3927	0.0022241	3.9204	0.0019849	506.30992324600993	48.991	0.89495	48.838	48.433	49.328	-0.15277					63	24	4	0	0	0	0.024288	1	5042	5042		52.937	12.159	1	1972900			79652	16981	55588	55681	87938	87938					0.09632084279905939
TLPLTKTY	8	Unmodified	_TLPLTKTY_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7899169921875	2	468.773668	935.532783	-0.2801	-0.00013131	-2.4408	-0.0011442	-2.721	-0.0012755	468.7724078431657	26.895	0.2642	26.977	26.799	27.064	0.081293					10	6	2	0	0	0	0.027866	1	1362	1362		18.324	6.1176	1	55200	+		79653	22435	55589	55682	87939	87939					0.0624383970002782
TLPLVPFG	8	Unmodified	_TLPLVPFG_					0	0	0			REV__ENST00000381813.4_1_2:10198012-10198201:-|nuORF	REV__ENST00000381813.4_1_2:10198012-10198201:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.5926208496094	2	422.252372	842.49019	-0.73135	-0.00030881	-2.4884	-0.0010507	-3.2197	-0.0013595	422.25066716129595	50.184	0.39103	50.184	50.02	50.411	0					14	11	2	0	0	0	0.027866	1	5258	5258		12.959	1.4482	1	96654	+		79654	31528	55590	55683	87940	87940					0.06264489362467884
TLPNLVILNEL	11	Unmodified	_TLPNLVILNEL_					0	0	0			REV__ENSG00000183230|ENST00000433211|CTNNA3	REV__ENSG00000183230|ENST00000433211|CTNNA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8701782226562	2	619.871371	1237.72819	-0.13269	-8.2249E-05	-2.9862	-0.001851	-3.1189	-0.0019333	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0557	1	11683	11683		23.523	2.5758	1	4730400	+		79655	27553	55591	55684	87941	87941					0.11883385434225602
TLPPKKNFD	9	Unmodified	_TLPPKKNFD_					0	0	0		ENSG00000151023|ENST00000331161|ENKUR	ENSG00000151023|ENST00000331161|ENKUR	ENSG00000151023|ENST00000331161|ENKUR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3170166015625	2	530.295299	1058.57605	-0.62924	-0.00033368	-3.5808	-0.0018989	-4.2101	-0.0022326	530.2933315228786	36.199	0.31203	35.994	35.852	36.164	-0.20518					11	8	2	0	0	0	0.02435	1	2822	2822		34.173	2.6427	1	157020			79656	6170	55592	55685	87942	87942					0.049100294773325004
TLPQDGIHPPM	11	Unmodified	_TLPQDGIHPPM_					0	0	0			REV__USP9X-BLVRB|1|fusion	REV__USP9X-BLVRB|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	602.3184814453125	2	603.302798	1204.59104	0.4712	0.00028428	-4.0102	-0.0024194	-3.539	-0.0021351	603.3000385235821	71.184	0.77452	70.896	70.459	71.234	-0.28857					44	18	3	0	0	0	0.024762	1	8573	8573		45.972	19.909	1	344590	+		79657	37773	55593	55686	87943	87943					-0.003068467169896394
TLPQRTLA	8	Unmodified	_TLPQRTLA_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2691650390625	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.71833	1	3199	3199		65.803	2.4969	1	141320000			79658	8707	55594	55687	87944	87944					0.07029491134369437
TLPQRTLA	8	Unmodified	_TLPQRTLA_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2691345214844	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.845	1	3169	3169		55.504	2.1528	1	136700000			79659	8707	55594	55687	87945	87945					0.07029491134369437
TLPQRTLA	8	Unmodified	_TLPQRTLA_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2686462402344	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.845	1	3100	3100		55.504	0	1	125590000			79660	8707	55594	55687	87946	87946					0.07029491134369437
TLPRAEPCL	9	Unmodified	_TLPRAEPCL_					0	0	0		ENST00000588327.1_1_19:3506419-3526183:+|nuORF	ENST00000588327.1_1_19:3506419-3526183:+|nuORF	ENST00000588327.1_1_19:3506419-3526183:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7701416015625	2	500.268227	998.521901	-0.72105	-0.00036072	2.8989	0.0014502	2.1778	0.0010895	500.770232839716	39.219	1.6566	39.054	38.659	40.316	-0.16459					129	44	6	0	0	0	0.6504	1	3310	3310		49.442	5.3247	1	26558000			79661	17285	55595	55688	87947	87947					0.022581140540978595
TLPRPRKP	8	Unmodified	_TLPRPRKP_					0	0	0			REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7658996582031	2	482.806168	963.597784	0.31493	0.00015205	-0.36237	-0.00017496	-0.047439	-2.2904E-05	482.8058531416011	47.465	0.56405	47.312	46.978	47.542	-0.15301					24	15	2	0	0	0	0.027866	1	4718	4718		7.6903	0	1	259060	+		79662	21956	55596	55689	87948	87948					0.11452879016553652
TLPRPTSLL	9	Unmodified	_TLPRPTSLL_					0	0	0			REV__ENST00000555923.1_1_14:81955203-81955461:-|nuORF	REV__ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.3212890625	2	499.305667	996.596781	-0.3581	-0.0001788	0.17123	8.5495E-05	-0.18688	-9.3309E-05	499.3055632469756	49.105	0.38836	48.952	48.792	49.181	-0.15277					17	10	2	0	0	0	0.024506	1	5009	5009		30.504	0	1	99679	+		79663	35019	55597	55690	87949	87949					0.09834619856997051
TLPRSPPPL	9	Unmodified	_TLPRSPPPL_					0	0	0			REV__ENST00000360535.8_1_19:36523251-36523727:-|nuORF	REV__ENST00000360535.8_1_19:36523251-36523727:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2682800292969	2	489.292559	976.570566	0.38621	0.00018897	-2.6495	-0.0012964	-2.2633	-0.0011074	489.29070471209974	58.495	1.1238	58.495	57.946	59.07	0					39	30	2	0	0	0	0.024412	1	6707	6707		31.955	0	1	723840	+		79664	30912	55598	55691	87950	87950					0.0813435068552053
TLPRSPPPL	9	Unmodified	_TLPRSPPPL_					0	0	0			REV__ENST00000360535.8_1_19:36523251-36523727:-|nuORF	REV__ENST00000360535.8_1_19:36523251-36523727:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.2689208984375	2	489.292559	976.570566	0.14479	7.0843E-05	-2.43	-0.001189	-2.2852	-0.0011181	489.2908298969179	58.682	1.1209	58.495	57.955	59.076	-0.18705					80	30	5	0	0	0	0.024381	1	6709	6709		29.15	0	1	789330	+		79665	30912	55598	55691	87951	87951					0.0813435068552053
TLPRVEER	8	Unmodified	_TLPRVEER_					0	0	0		ENSG00000169926|ENST00000307145|KLF13	ENSG00000169926|ENST00000307145|KLF13	ENSG00000169926|ENST00000307145|KLF13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.2723388671875	2	500.282723	998.550893	-0.56938	-0.00028485	2.4505	0.0012259	1.8811	0.0009411	500.7838989988645	39.391	0.38286	39.168	38.999	39.382	-0.22311					13	9	2	0	0	0	0.027866	1	3352	3352		49.442	0	1	139870			79666	7991	55599	55692	87952	87952					0.051559746747557256
TLPSDQPKEH	10	Unmodified	_TLPSDQPKEH_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8142700195312	2	576.288202	1150.56185	-0.1863	-0.00010736	0.61532	0.0003546	0.42902	0.00024724	576.2885156282234	47.53	0.66573	47.344	47.084	47.749	-0.18684					50	17	4	0	0	0	0.03519	1	4655	4655		79.713	40.46	1	1605300			79667	3717	55600	55693	87953	87953					-0.007406677416156526
TLPSTTVQPS	10	Unmodified	_TLPSTTVQPS_					0	0	0		ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	ENSG00000184677|ENST00000375647|ZBTB40	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7731323242188	2	515.774396	1029.53424	-0.50352	-0.0002597	0.84199	0.00043428	0.33847	0.00017457	515.774779561194	67.016	0.5114	66.734	66.525	67.037	-0.28149					32	12	3	0	0	0	1.0909	1	7965	7965		33.922	2.3918	1	2814200			79668	9362	55601	55694	87954	87954					0.02065428998139396
TLPTEREEI	9	Unmodified	_TLPTEREEI_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333;REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.2979125976562	2	544.285128	1086.5557	-1.4474	-0.00078777	-0.023426	-1.275E-05	-1.4708	-0.00080052	544.2848992229966	62.843	0.56805	62.604	62.492	63.06	-0.23926					14	13	2	0	0	0	0.024539	1	7284	7284		35.618	14.671	1	103400	+		79669	25364;31628	55602	55695	87955	87955					0.015888140268543793
TLPTLPSLL	9	Unmodified	_TLPTLPSLL_					0	0	0			REV__ENST00000572836.5_1_17:7487180-7490759:+|nuORF	REV__ENST00000572836.5_1_17:7487180-7490759:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.76806640625	2	477.797143	953.579734	-0.13511	-6.4557E-05	-3.3363	-0.0015941	-3.4714	-0.0016586	477.7952025456524	28.175	0.40975	28.256	28.124	28.533	0.080811					12	9	2	0	0	0	0.024523	1	1565	1565		15.642	0	1	62816	+		79670	23041	55603	55696	87956	87956					0.10108699251179587
TLPTPVEITV	10	Unmodified	_TLPTPVEITV_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.3162841796875	2	535.310615	1068.60668	-0.6964	-0.00037279	-2.0899	-0.0011187	-2.7863	-0.0014915	535.8111658934928	33.917	0.34899	33.713	33.514	33.863	-0.2036					13	8	2	0	0	0	0.03519	1	2424	2424		9.7057	0	1	123980			79671	3851	55604	55697	87957	87957					0.07511763071715905
TLPVEEPR	8	Unmodified	_TLPVEEPR_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7483825683594	2	470.758549	939.502546	0.10412	4.9014E-05	0.10493	4.9396E-05	0.20905	9.841E-05	470.75846030018516	45.485	0.87656	45.485	45.214	46.09	0					38	25	2	0	0	0	0.027866	1	4401	4401		35.618	0	1	846530			79672	1426	55605	55698	87958	87958					0.03037481034857592
TLPVLRRRLLL	11	Unmodified	_TLPVLRRRLLL_					0	0	0		RASA3|p.R49Qfs*20|1|0.29|ENSG00000185989|chr13:114073749-114073750|-/A|frameshift_variant	RASA3|p.R49Qfs*20|1|0.29|ENSG00000185989|chr13:114073749-114073750|-/A|frameshift_variant	RASA3|p.R49Qfs*20|1|0.29|ENSG00000185989|chr13:114073749-114073750|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.268798828125	3	450.641634	1348.90307	-0.10221	-4.606E-05	1.4099	0.00063538	1.3077	0.00058932	450.6422729115648	43.962	0.85359	43.999	43.419	44.273	0.036903					32	23	3	0	0	0	0.024772	1	4093	4093		32.751	14.219	1	183060			79673	19028	55606	55699	87959	87959					0.2425785008992989
TLPVTWKV	8	Unmodified	_TLPVTWKV_					0	0	0		ENST00000587384.5_3_19:34850692-34855755:+|nuORF	ENST00000587384.5_3_19:34850692-34855755:+|nuORF	ENST00000587384.5_3_19:34850692-34855755:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2817687988281	2	472.284203	942.553853	-0.26002	-0.0001228	-4.3462	-0.0020526	-4.6062	-0.0021754	472.28201070893914	47.346	0.8566	47.152	46.886	47.742	-0.19387					59	22	4	0	0	0	0.77775	1	4638	4638		60.972	2.19	1	3258700			79674	17268	55607	55700	87960	87960					0.08027849799555042
TLPYRLLL	8	Unmodified	_TLPYRLLL_					0	0	0			REV__ENST00000318522.9_1_2:42557683-42557836:+|nuORF	REV__ENST00000318522.9_1_2:42557683-42557836:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7701721191406	2	494.813128	987.611703	0.87089	0.00043093	-0.38933	-0.00019265	0.48156	0.00023828	494.8126899827308	70.554	0.88637	70.261	70.184	71.07	-0.29291					34	23	2	0	0	0	0.027866	1	8519	8519		31.955	0	1	779410	+		79675	30309	55608	55701	87961	87961					0.11740111724986946
TLPYTNLEF	9	Unmodified	_TLPYTNLEF_					0	0	0			REV__ENST00000475577.5_1_6:10527835-10626837:+|nuORF	REV__ENST00000475577.5_1_6:10527835-10626837:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.77685546875	2	549.279315	1096.54408	-0.27167	-0.00014922	0.27242	0.00014964	0.00075938	4.1711E-07	549.27933681664	78.01	0.80597	77.748	77.399	78.205	-0.26202					35	18	3	0	0	0	0.024539	1	9335	9335		20.947	0	1	715260	+		79676	21951	55609	55702	87962	87962					-0.00033382996502950846
TLPYVGDPIS	10	Unmodified	_TLPYVGDPIS_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENST00000492535.1_1_22:32889009-32894514:+|nuORF	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2669067382812	2	531.279315	1060.54408	0.036533	1.9409E-05	0.64839	0.00034447	0.68492	0.00036388	531.2793626993442	20.88	0.96483	20.712	20.395	21.359	-0.16774					27	19	2	0	0	0	0.03519	1	568	568		39.253	12.56	1	38143			79677	2154	55610	55703	87963	87963					0.01622617003522464
TLQAAIQQSR	10	Unmodified	_TLQAAIQQSR_					0	0	0			REV__nc|ENSG00000171992|Q8N3V7|SYNPO	REV__nc|ENSG00000171992|Q8N3V7|SYNPO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.2775268554688	2	558.312012	1114.60947	-0.060011	-3.3505E-05	3.3921	0.0018938	3.3321	0.0018603	558.3136679909614	68.933	0.49176	68.64	68.405	68.897	-0.29267					20	12	2	0	0	0	0.03519	1	8211	8211		38.754	17.807	1	280750	+		79678	36936	55611	55704	87964	87964					0.05675031249211315
TLQAELLVVYG	11	Unmodified	_TLQAELLVVYG_					0	0	0		ENST00000579536.1_1_17:27908354-27909910:-|nuORF;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1	ENST00000579536.1_1_17:27908354-27909910:-|nuORF	ENST00000579536.1_1_17:27908354-27909910:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	604.3161010742188	2	603.342446	1204.67034	0.052605	3.1739E-05	1.0278	0.00062013	1.0804	0.00065187	603.3428612751721	56.627	0.47198	56.402	56.189	56.661	-0.2248					21	11	3	0	0	0	0.024736	1	6145	6145		29.17	6.5904	1	334440			79679	2885	55612	55705	87965	87965					0.07619123508811754
TLQAKAEQV	9	Unmodified	_TLQAKAEQV_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.2703552246094	2	494.277106	986.53966	-0.30302	-0.00014978	1.2008	0.00059352	0.89777	0.00044375	494.2768121060812	57.361	0.73722	57.127	56.805	57.543	-0.23363					52	19	4	0	0	0	0.43628	1	6270	6270		63.534	5.3039	1	2716100	+		79680	22623	55613	55706	87966	87966					0.04585152580614249
TLQDQDLCF	9	Unmodified	_TLQDQDLCF_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.335205078125	2	541.744782	1081.47501	-0.99847	-0.00054092	3.4465	0.0018671	2.448	0.0013262	541.7465137187743	53.115	0.48584	52.967	52.682	53.168	-0.14723					23	12	2	0	0	0	0.024405	1	5723	5723		44.117	14.967	1	1478000	+		79681	24334	55614	55707	87967	87967					-0.06246790287696058
TLQDQDLCF	9	Unmodified	_TLQDQDLCF_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	541.744782	1081.47501	-0.07786	-4.218E-05	4.0387	0.0021879	3.9608	0.0021458	541.7467633408775	53.077	0.53716	52.949	52.753	53.29	-0.12706	-0.042319	0.0004208	NaN	68.787	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260630	+		79682	24334	55614	55707							-0.06246790287696058
TLQDQDLCF	9	Unmodified	_TLQDQDLCF_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	541.744782	1081.47501	-0.033933	-1.8383E-05	3.4963	0.0018941	3.4624	0.0018757	541.7465852063374	53.329	0.52701	53.07	52.843	53.37	-0.25838	0.078398	-0.00016688	NaN	68.787	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262200	+		79683	24334	55614	55707							-0.06246790287696058
TLQDQDLCF	9	Unmodified	_TLQDQDLCF_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	541.744782	1081.47501	-0.82619	-0.00044759	4.5167	0.0024469	3.6906	0.0019993	541.7470374446779	53.15	0.45238	52.96	52.831	53.283	-0.18982	-0.031536	0.00093876	NaN	68.787	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346200	+		79684	24334	55614	55707							-0.06246790287696058
TLQENLENL	9	Unmodified	_TLQENLENL_					0	0	0		ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.796875	2	537.277303	1072.54005	-1.1827	-0.00063544	2.227	0.0011965	1.0443	0.00056108	537.7822213917236	75.784	0.25965	75.784	75.696	75.956	0					10	6	2	0	0	0	0.024288	1	9324	9324		44.377	0	1	80721			79685	4809	55615	55708	87968	87968					0.006685275098107013
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7830200195312	2	522.782222	1043.54989	-0.30413	-0.00015899	-0.055286	-2.8903E-05	-0.35942	-0.0001879	522.7821376881532	67.776	1.5393	67.776	67.285	68.825	0					89	39	3	0	0	0	0.094442	2	8107	8107;8119		112.41	19.268	1	3766300			79686	2112	55616	55709	87969;87970	87969					0.029857155152058112
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7830200195312	2	522.782222	1043.54989	-0.019783	-1.0342E-05	-0.28012	-0.00014644	-0.2999	-0.00015678	522.782041559986	68.157	1.0864	67.869	67.552	68.639	-0.28834					63	27	3	0	0	0	0.094442	2	8126	8114;8126		112.41	22.041	1	4100000			79687	2112	55616	55709	87971;87972	87972					0.029857155152058112
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.78369140625	2	522.782222	1043.54989	0.22036	0.0001152	-0.38751	-0.00020258	-0.16715	-8.7381E-05	522.781952445555	67.966	1.2638	67.985	67.384	68.648	0.018921					74	32	4	0	0	0	0.11727	2	8047	8037;8047		106.68	7.5754	1	4021600			79688	2112	55616	55709	87973;87974	87974					0.029857155152058112
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.782222	1043.54989	0.24898	0.00013016	-0.61965	-0.00032394	-0.37067	-0.00019378	522.7818484305333	68.251	0.72836	67.996	67.661	68.389	-0.25516	0.06929	-0.00035508	NaN	112.41	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304460			79689	2112	55616	55709							0.029857155152058112
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	522.782222	1043.54989	0.53442	0.00027938	-0.7101	-0.00037123	-0.17569	-9.1845E-05	522.7818588019495	68.188	0.64269	67.955	67.756	68.399	-0.23375	0.028342	-0.00044965	NaN	112.41	35	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428280			79690	2112	55616	55709							0.029857155152058112
TLQEQIEAI	9	Unmodified	_TLQEQIEAI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.782222	1043.54989	0.49298	0.00025772	-0.51549	-0.00026949	-0.022504	-1.1765E-05	522.7819115537951	68.209	0.56108	67.979	67.755	68.316	-0.23048	0.052317	-0.00024616	NaN	112.41	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466780			79691	2112	55616	55709							0.029857155152058112
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000554117.1_1_14:39644495-39645354:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2853393554688	2	530.287671	1058.56079	-1.5397	-0.00081648	0.8786	0.00046591	-0.6611	-0.00035057	530.287963709455	43.745	0.81135	43.745	43.404	44.215	0					60	22	6	0	0	0	0.28753	1	4120	4120		77.318	7.69	1	3605500			79692	2263	55617	55710	87975	87975					0.03385117889479261
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000554117.1_1_14:39644495-39645354:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.285400390625	2	530.287671	1058.56079	-1.2908	-0.00068449	0.61534	0.00032631	-0.67544	-0.00035818	530.2878432626754	43.963	0.83131	43.819	43.461	44.292	-0.14471					48	23	3	0	0	0	0.57016	1	4139	4139		54.722	1.3709	1	3562200			79693	2263	55617	55710	87976	87976					0.03385117889479261
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000554117.1_1_14:39644495-39645354:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.287671	1058.56079	-0.28782	-0.00015263	-0.30688	-0.00016273	-0.5947	-0.00031536	530.2873492012773	43.868	0.74187	43.899	43.558	44.3	0.030827	0.036059	-0.00063336	NaN	77.318	46	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4000300			79694	2263	55617	55710							0.03385117889479261
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000554117.1_1_14:39644495-39645354:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.287671	1058.56079	-0.85722	-0.00045457	-0.51672	-0.00027401	-1.3739	-0.00072859	530.2873356720746	43.969	0.69497	43.864	43.544	44.239	-0.10468	0.0014142	-0.00085592	NaN	77.318	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647960			79695	2263	55617	55710							0.03385117889479261
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000554117.1_1_14:39644495-39645354:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	530.287671	1058.56079	-1.4247	-0.0007555	0.5268	0.00027935	-0.89791	-0.00047615	530.287656942606	44.161	0.65848	43.917	43.632	44.291	-0.2444	0.054164	0.00025081	NaN	77.318	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	639950			79696	2263	55617	55710							0.03385117889479261
TLQEQLEKA	9	Unmodified	_TLQEQLEKA_					0	0	0		ENSG00000100941|ENST00000216832|PNN;ENST00000554117.1_1_14:39644495-39645354:+|nuORF	ENSG00000100941|ENST00000216832|PNN	ENSG00000100941|ENST00000216832|PNN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.287671	1058.56079	-1.0238	-0.00054291	0.1685	8.9355E-05	-0.85531	-0.00045356	530.2875440506801	44.152	0.57708	43.933	43.672	44.249	-0.21939	0.070318	-0.00012918	NaN	77.318	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722520			79697	2263	55617	55710							0.03385117889479261
TLQFIVAED	9	Unmodified	_TLQFIVAED_					0	0	0		nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT	nc|ENSG00000095321|P43155-2|CRAT	nc|ENSG00000095321|P43155-2|CRAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.2991333007812	2	518.27149	1034.52843	-0.28019	-0.00014521	3.7149	0.0019253	3.4348	0.0017801	518.2731865340177	68.172	1.1119	68.172	67.568	68.68	0					54	28	3	0	0	0	0.024205	1	8106	8106		44.117	8.4985	1	379530			79698	2022	55618	55711	87977	87977					0.012543304864948368
TLQHYYREI	9	Unmodified	_TLQHYYREI_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	408.7688293457031	3	408.212017	1221.61422	0.089486	3.6529E-05	-0.52587	-0.00021467	-0.43639	-0.00017814	408.5446149982873	35.199	1.0925	34.983	34.548	35.641	-0.21555					74	27	4	0	0	0	0.024527	1	2684	2684		4.6126	0	1	184800	+		79699	22103	55619	55712	87978	87978					0.012279153919962482
TLQINKLQPTE	11	Unmodified	_TLQINKLQPTE_					0	0	0		ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15	ENSG00000133863|ENST00000643185|TEX15	ENSG00000133863|ENST00000643185|TEX15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.7372131347656	3	428.910115	1283.70852	-0.45792	-0.00019641	2.9509	0.0012657	2.493	0.0010693	429.24579791977936	40.07	0.45483	39.958	39.754	40.208	-0.11223					13	11	2	0	0	0	0.024757	1	3470	3470		20.315	3.7852	1	223420			79700	4736	55620	55713	87979	87979					0.07801009423451433
TLQKNKLVY	9	Unmodified	_TLQKNKLVY_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8314819335938	2	553.832049	1105.64954	-0.97515	-0.00054007	0.031605	1.7504E-05	-0.94354	-0.00052256	553.8320187004048	48.673	1.4707	48.395	48.078	49.549	-0.27785					120	39	5	0	0	0	0.33245	1	4866	4866		71.296	9.1883	1	19538000	+		79701	26953	55621	55714	87980	87980					0.10094577919812764
TLQLDVLPND	10	Unmodified	_TLQLDVLPND_					0	0	0		HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.3534545898438	2	564.300778	1126.587	0.97486	0.00055011	-3.0444	-0.001718	-2.0696	-0.0011679	564.2989544882097	74.486	1.097	74.486	74.172	75.269	0					76	26	5	0	0	0	0.03519	1	9096	9096		33.922	4.7516	1	2308300			79702	17748	55622	55715	87981	87981					0.028773870609711594
TLQLRSSMAK	10	Unmodified	_TLQLRSSMAK_					0	0	0		ENSG00000102362|ENST00000372989|SYTL4	ENSG00000102362|ENST00000372989|SYTL4	ENSG00000102362|ENST00000372989|SYTL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.290771484375	2	567.818615	1133.62268	-0.75889	-0.00043091	-1.7778	-0.0010095	-2.5367	-0.0014404	567.8175914670737	60.64	0.68145	60.426	60	60.682	-0.2134					21	17	2	0	0	0	0.03519	1	6883	6883		29.17	3.596	1	97182			79703	2405	55623	55716	87982	87982					0.06121146036957725
TLQNHVKIV	9	Unmodified	_TLQNHVKIV_					0	0	0			REV__MLT2C1_dup2391|chr19:43794789-43795170:-|1.1304770532666923|0.2395024624305904|2.24|522.0|13|3|sense	REV__MLT2C1_dup2391|chr19:43794789-43795170:-|1.1304770532666923|0.2395024624305904|2.24|522.0|13|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7960815429688	2	526.316566	1050.61858	-0.8489	-0.00044679	0.42896	0.00022577	-0.41994	-0.00022102	526.3166899957497	52.148	0.55968	52.148	51.871	52.431	0					35	14	3	0	0	0	0.024477	1	5578	5578		44.117	8.4985	1	385230	+		79704	36391	55624	55717	87983	87983					0.09529424605557324
TLQQAQQLG	9	Unmodified	_TLQQAQQLG_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.7814025878906	2	493.766906	985.519259	-0.42105	-0.0002079	-3.1589	-0.0015598	-3.58	-0.0017677	493.76533525372656	58.468	0.17981	58.281	58.206	58.386	-0.18705					6	4	2	0	0	0	0.022083	1	6587	6587		99.375	0	1	84749			79705	9497	55625	55718	87984	87984					0.02591981920818398
TLQQFVGNFF	10	Unmodified	_TLQQFVGNFF_					0	0	0		PLXNB2|p.D1637G|1|0.39|ENSG00000196576|chr22:50277991-50277991|T/C|missense_variant	PLXNB2|p.D1637G|1|0.39|ENSG00000196576|chr22:50277991-50277991|T/C|missense_variant	PLXNB2|p.D1637G|1|0.39|ENSG00000196576|chr22:50277991-50277991|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.886474609375	3	400.873113	1199.59751	0.30174	0.00012096	-3.476	-0.0013935	-3.1743	-0.0012725	401.20577514362014	54.851	0.30248	54.705	54.459	54.761	-0.14609					9	7	2	0	0	0	0.03519	1	5844	5844		30.569	1.3239	1	70674			79706	18974	55626	55719	87985	87985					0.005694145060488154
TLQQGSHTNI	10	Unmodified	_TLQQGSHTNI_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.3370971679688	2	549.780544	1097.54654	-0.55302	-0.00030404	4.2718	0.0023485	3.7188	0.0020445	549.7822909591521	68.638	1.0559	68.638	68.217	69.273	0					39	27	2	0	0	0	0.03519	1	8182	8182		54.776	10.399	1	567130			79707	2283	55627	55720	87986	87986					0.0016646546118863625
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.3428955078125	2	639.843676	1277.6728	0.77926	0.0004986	-2.0506	-0.001312	-1.2713	-0.00081343	640.3442522863083	100.59	0.38808	100.59	100.31	100.7	0					11	8	2	0	0	0	0.94988	1	12872	12872		47.96	7.1814	1	297190			79708	6092	55628	55721	87987	87987					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.3435668945312	2	639.843676	1277.6728	0.92947	0.00059472	-1.5993	-0.0010233	-0.66985	-0.0004286	640.3444297584163	99.957	0.51665	99.967	99.617	100.13	0.010109					22	13	2	0	0	0	0.79111	3	12759	12738;12747;12759		58.23	23.078	1	630180			79709	6092	55628	55721	87988;87989;87990	87990					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	640.3480834960938	2	639.843676	1277.6728	0.18312	0.00011717	-0.23669	-0.00015144	-0.053568	-3.4275E-05	640.3453501128264	105.34	0.32214	105.33	105.15	105.47	-0.0015945					13	8	2	0	0	0	0.92638	2	13453	13440;13453		50.034	10.781	1	360010			79710	6092	55628	55721	87991;87992	87992					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MSMS	OPSCC_39_ClassI_Rep-3	3	639.8451538085938	2	639.843676	1277.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.08	1	100.07	99.575	100.57	-0.0050888								0	0	0	1.072	1	12726	12726		38.754	2.3069	1				79711	6092	55628	55721	87993	87993					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	639.8446655273438	2	639.843676	1277.6728	-0.90937	-0.00058185	0.063533	4.0651E-05	-0.84583	-0.0005412	639.8431756911349	100.05	0.72812	99.919	99.595	100.32	-0.13364					37	21	2	0	0	0	0.55321	6	12400	12388;12400;12407;12411;12421;12430		72.879	31.453	1	1434000			79712	6092	55628	55721	87994;87995;87996;87997;87998;87999	87995					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.3452758789062	2	639.843676	1277.6728	-1.4289	-0.00091429	1.9861	0.0012708	0.55716	0.00035649	640.3463426063859	105.36	0.40593	105.23	105.03	105.44	-0.12444					26	9	4	0	0	0	0.73399	2	13116	13110;13116		61.691	23.88	1	454750			79713	6092	55628	55721	88000;88001	88001					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.34912109375	2	639.843676	1277.6728	0.62354	0.00039897	-1.5307	-0.00097941	-0.90716	-0.00058044	640.3446580883069	100.07	0.55721	99.941	99.64	100.2	-0.12503					35	18	2	0	0	0	0.87847	2	12424	12424;12445		52.937	12.879	1	1115100			79714	6092	55628	55721	88002;88003	88002					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.3450927734375	2	639.843676	1277.6728	0.44525	0.00028489	-1.728	-0.0011056	-1.2827	-0.00082073	640.344753261714	100.71	0.27943	100.59	100.4	100.68	-0.12504					12	8	2	0	0	0	0.93459	1	12502	12502		49.536	5.1589	1	157890			79715	6092	55628	55721	88004	88004					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	640.3478393554688	2	639.843676	1277.6728	-0.88749	-0.00056785	1.7931	0.0011473	0.9056	0.00057944	640.3466750143824	105.46	0.40826	105.33	105.09	105.5	-0.13099					23	10	3	0	0	0	0.95664	2	13122	13122;13134		46.457	13.644	1	622380			79716	6092	55628	55721	88005;88006	88005					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.3432006835938	2	639.843676	1277.6728	-0.3483	-0.00022286	-0.31445	-0.0002012	-0.66275	-0.00042406	639.8427864803843	100.12	0.5573	99.947	99.726	100.28	-0.17088					41	18	3	0	0	0	0.72712	7	12401	12401;12404;12407;12415;12419;12428;12435		62.107	22.049	1	1080000			79717	6092	55628	55721	88007;88008;88009;88010;88011;88012;88013	88007					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	640.34521484375	2	639.843676	1277.6728	0.060114	3.8464E-05	0.65194	0.00041714	0.71206	0.0004556	640.3458355327866	105.37	0.36747	105.21	105.09	105.45	-0.16484					28	9	4	0	0	0	0.90172	3	13109	13109;13115;13125		51.528	16.376	1	889270			79718	6092	55628	55721	88014;88015;88016	88014					0.04506971966452511
TLQRNGYDLAK	11	Unmodified	_TLQRNGYDLAK_					0	0	0		ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2;MTA2|p.T338Pfs*19|1|0.42|ENSG00000149480|chr11:62596284-62596284|G/-|frameshift_variant	ENSG00000149480|ENST00000278823|MTA2	ENSG00000149480|ENST00000278823|MTA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	639.843676	1277.6728	0.80868	0.00051743	-2.198	-0.0014064	-1.3893	-0.00088892	640.344019501029	100.61	0.35136	100.62	100.44	100.79	0.010109	0.020741	-0.00054636	NaN	49.536	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278410			79719	6092	55628	55721							0.04506971966452511
TLQSRAVE	8	Unmodified	_TLQSRAVE_					0	0	0			REV__ENST00000602743.1_1_17:13801940-13972716:-|nuORF	REV__ENST00000602743.1_1_17:13801940-13972716:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2284851074219	2	452.248349	902.482145	0.59148	0.0002675	0.5475	0.00024761	1.139	0.0005151	452.24864848553347	102.75	0.59452	102.62	102.15	102.75	-0.1293					20	13	2	0	0	0	0.027866	1	12769	12769		34.173	5.023	1	32960	+		79720	35887	55629	55722	88017	88017					0.0270031037505305
TLQSRAVE	8	Unmodified	_TLQSRAVE_					0	0	0			REV__ENST00000602743.1_1_17:13801940-13972716:-|nuORF	REV__ENST00000602743.1_1_17:13801940-13972716:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	452.248349	902.482145	0.24966	0.00011291	0.67125	0.00030357	0.9209	0.00041648	452.2489023866263	102.62	0.5553	102.45	102.17	102.72	-0.17155	-0.065484	-0.00012606	NaN	34.173	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45215	+		79721	35887	55629	55722							0.0270031037505305
TLQSSRDP	8	Unmodified	_TLQSSRDP_					0	0	0		FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3595Afs*3|1|0.11|ENSG00000083857|chr4:186603737-186603743|CCCCTGT/-|frameshift_variant;FAT1|p.E1885*|1|0.28|ENSG00000083857|chr4:186620933-186620934|-/A|frameshift_variant;FAT1|p.P2007Vfs*12|1|0.21|ENSG00000083857|chr4:186620551-186620567|AAAGGCTCATTGATTGG/-|frameshift_variant;FAT1|p.F2333Sfs*24|1|0.1|ENSG00000083857|chr4:186619566-186619588|GCCAGTGCTGCTGTCTACATGAA/-|frameshift_variant;FAT1|p.N2386Ifs*24|1|0.08|ENSG00000083857|chr4:186619429-186619429|T/-|frameshift_variant;FAT1|p.Y2395Mfs*15|1|0.26|ENSG00000083857|chr4:186619403-186619403|A/-|frameshift_variant;FAT1|p.V2563*|1|0.17|ENSG00000083857|chr4:186618899-186618899|C/-|frameshift_variant;FAT1|p.V2618Ffs*25|1|0.11|ENSG00000083857|chr4:186618735-186618735|T/-|frameshift_variant;FAT1|p.L1883Ffs*3|1|0.12|ENSG00000083857|chr4:186620937-186620938|-/A|frameshift_variant;FAT1|p.G2758Wfs*32|1|0.24|ENSG00000083857|chr4:186618303-186618315|CTTCAGTCTCCCG/-|frameshift_variant;FAT1|p.S2826Kfs*2|2|0.36|ENSG00000083857|chr4:186618111-186618112|-/C|frameshift_variant;FAT1|p.S2928Efs*2|1|0.29|ENSG00000083857|chr4:186617805-186617806|-/A|frameshift_variant;FAT1|p.R3087Pfs*2|1|0.24|ENSG00000083857|chr4:186613312-186613313|-/G|frameshift_variant;FAT1|p.V3229Cfs*3|1|0.34|ENSG00000083857|chr4:186611555-186611556|-/G|frameshift_variant;FAT1|p.F3230Sfs*39|1|0.71|ENSG00000083857|chr4:186611548-186611551|CAAA/-|frameshift_variant;FAT1|p.T3332Nfs*15|1|0.45|ENSG00000083857|chr4:186609874-186609875|-/T|frameshift_variant;FAT1|p.M3586Afs*3|1|0.1|ENSG00000083857|chr4:186603737-186603770|CCCCTGTGCTGGAAACAGAGAACAGGTTGTCCAT/-|frameshift_variant;FAT1|p.D2794Mfs*6|1|0.12|ENSG00000083857|chr4:186618207-186618207|T/-|frameshift_variant;FAT1|p.Q1848Hfs*11|1|0.17|ENSG00000083857|chr4:186621021-186621042|TGGGGTTCCCATGTCATGCACT/-|frameshift_variant;FAT1|p.T1555Rfs*30|1|0.38|ENSG00000083857|chr4:186628300-186628300|G/-|frameshift_variant;FAT1|p.S1553Rfs*4|1|0.28|ENSG00000083857|chr4:186628304-186628305|CG/-|frameshift_variant;FAT1|p.V1689Gfs*14|1|0.34|ENSG00000083857|chr4:186621520-186621521|-/CC|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.A3648Sfs*24|1|0.28|ENSG00000083857|chr4:186603579-186603585|GTTGGCA/-|frameshift_variant;FAT1|p.H3689Qfs*22|1|0.07|ENSG00000083857|chr4:186603432-186603459|TACAAAAAGTAAGACGTCCAGATGTGGG/-|frameshift_variant;FAT1|p.S3763Nfs*7|1|0.33|ENSG00000083857|chr4:186603238-186603239|-/TGTGT|frameshift_variant;FAT1|p.P4007Ifs*45|1|0.35|ENSG00000083857|chr4:186599985-186599986|-/TACT|frameshift_variant;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant	FAT1|p.N2075Mfs*32|1|0.35|ENSG00000083857|chr4:186620362-186620362|T/-|frameshift_variant;FAT1|p.T3083Pfs*33|1|0.21|ENSG00000083857|chr4:186613325-186613325|T/-|frameshift_variant;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.F2438Lfs*18|1|0.37|ENSG00000083857|chr4:186619266-186619272|AATGACA/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2287292480469	2	452.230156	902.445759	-0.096225	-4.3516E-05	-4.2089	-0.0019034	-4.3051	-0.0019469	452.2283213741261	102.93	1.6273	102.8	102.45	104.08	-0.12783					71	39	4	0	0	0	1.0198	1	12787	12787		34.173	0	1	4172900			79722	1762;17640;17642;17639	55630	55723	88018	88018					-0.009365665216591879
TLQWAHRA	8	Unmodified	_TLQWAHRA_					0	0	0			REV__ENSG00000125657|ENST00000245817|TNFSF9	REV__ENSG00000125657|ENST00000245817|TNFSF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.80584716796875	2	491.764501	981.514448	0.62225	0.000306	-3.6088	-0.0017747	-2.9866	-0.0014687	491.76258553585495	96.601	0.44031	96.607	96.44	96.881	0.0065002					15	9	2	0	0	0	0.027866	1	12281	12281		24.203	4.8428	1	82760	+		79723	22832	55631	55724	88019	88019					0.022951425686983384
TLRELRLHL	9	Unmodified	_TLRELRLHL_					0	0	0			REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	REV__nc|ENSG00000139641|Q9BSJ8-2|ESYT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	575.84326171875	2	575.85639	1149.69823	-1.9698	-0.0011343	4.4196	0.002545	2.4497	0.0014107	576.3602533974524	91.546	0.3878	91.546	91.341	91.729	0					10	8	2	0	0	0	0.024447	1	11577	11577		19.104	0	1	24553	+		79724	23954	55632	55725	88020	88020					0.12936491279538131
TLREVLVN	8	Unmodified	_TLREVLVN_					0	0	0			REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2928771972656	2	472.282192	942.549831	0.3013	0.0001423	-0.301	-0.00014216	0.00029874	1.4109E-07	472.28187544744253	50.776	1.0139	50.627	50.356	51.369	-0.14916					52	28	2	0	0	0	0.027866	1	5277	5277		58.782	19.976	1	2911700	+		79725	25784	55633	55726	88021	88021					0.0762576030585933
TLRFPQVLA	9	Unmodified	_TLRFPQVLA_					0	0	0			REV__MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant	REV__MCHR2|p.F208Sfs*5|1|0.41|ENSG00000152034|chr6:99934482-99934482|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7623901367188	2	522.813659	1043.61277	0.62102	0.00032468	-0.8931	-0.00046693	-0.27208	-0.00014225	522.813052744643	59.597	0.32286	59.4	59.214	59.537	-0.19742					12	7	2	0	0	0	0.024457	1	6597	6597		29.15	2.4566	1	207980	+		79726	24809	55634	55727	88022	88022					0.09270326093906078
TLRFSEGRV	9	Unmodified	_TLRFSEGRV_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3107299804688	2	532.795998	1063.57744	-0.8447	-0.00045005	-3.0346	-0.0016168	-3.8793	-0.0020669	532.7947448180818	35.52	0.20179	35.307	35.193	35.395	-0.21246					7	4	2	0	0	0	0.024418	1	2691	2691		45.972	14.017	1	44899	+		79727	26033	55635	55728	88023	88023					0.048196635660815446
TLRGFNAPL	9	Unmodified	_TLRGFNAPL_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2947692871094	2	494.782359	987.550165	0.18053	8.9321E-05	-0.40382	-0.00019981	-0.2233	-0.00011048	494.78236891632474	53.385	0.92324	53.385	53.086	54.01	0					49	25	4	0	0	0	0.024477	1	5738	5738		14.865	0	1	372850	+		79728	22029	55636	55729	88024	88024					0.055891800256858915
TLRGFNAPL	9	Unmodified	_TLRGFNAPL_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.29498291015625	2	494.782359	987.550165	-0.36343	-0.00017982	1.449	0.00071693	1.0855	0.00053711	494.7829732928747	53.233	0.31659	53.329	53.054	53.371	0.095669					14	8	2	0	0	0	0.024427	1	5642	5642		34.173	11.13	1	245150	+		79729	22029	55636	55729	88025	88025					0.055891800256858915
TLRGLEIEL	9	Unmodified	_TLRGLEIEL_					0	0	0		ENST00000540749.1_1_12:9280913-9281237:+|nuORF	ENST00000540749.1_1_12:9280913-9281237:+|nuORF	ENST00000540749.1_1_12:9280913-9281237:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3077392578125	2	522.308406	1042.60226	-0.4702	-0.00024559	-1.9137	-0.00099956	-2.3839	-0.0012451	522.3069846575812	32.151	1.3557	32.214	31.72	33.076	0.062889					67	34	4	0	0	0	0.17822	1	2180	2180		93.195	5.4412	1	2355600			79730	16430	55637	55730	88026	88026					0.0826629864880033
TLRHELIS	8	Unmodified	_TLRHELIS_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7925720214844	2	484.779816	967.545079	-1.1272	-0.00054645	-3.8348	-0.001859	-4.962	-0.0024055	484.776462286383	83.43	0.25478	83.456	83.3	83.555	0.02655					6	5	2	0	0	0	0.027866	1	10358	10358		38.806	0	1	35313			79731	4087	55638	55731	88027	88027					0.06000876163091107
TLRIHGAQ	8	Unmodified	_TLRIHGAQ_					0	0	0			REV__nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1	REV__nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	448.25885009765625	2	448.259051	894.503549	0.20031	8.9789E-05	-0.47015	-0.00021075	-0.26985	-0.00012096	448.25872211244354	89.189	1.6752	89.051	88.482	90.157	-0.13761					97	39	4	0	0	0	1.0574	1	10867	10867		21.96	0	1	8594700	+		79732	28399	55639	55732	88028	88028					0.05207740194430244
TLRIRRLGEP	10	Unmodified	_TLRIRRLGEP_					0	0	0		nc|ENSG00000157326|Q9BTZ2-2|DHRS4;ENSG00000157326|ENST00000313250|DHRS4;nc|ENSG00000157326|Q9BTZ2-6|DHRS4;ENST00000559270.5_2_14:24507775-24520174:+|nuORF;nc|ENSG00000157326|Q9BTZ2-3|DHRS4;nc|ENSG00000157326|Q9BTZ2-5|DHRS4;nc|ENSG00000157326|Q9BTZ2-8|DHRS4;nc|ENSG00000157326|Q9BTZ2-4|DHRS4;nc|ENSG00000285467|P0CG22|DHRS4L1	nc|ENSG00000157326|Q9BTZ2-2|DHRS4	nc|ENSG00000157326|Q9BTZ2-2|DHRS4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8717651367188	2	605.872571	1209.73059	-0.09991	-6.0533E-05	-0.63614	-0.00038542	-0.73605	-0.00044595	605.8719802701046	98.576	1.0775	98.586	98.19	99.268	0.010231					67	24	4	0	0	0	1.1088	1	12557	12557		31.53	3.4483	1	1246300			79733	6590	55640	55733	88029	88029					0.13411278682542616
TLRIRRLGEP	10	Unmodified	_TLRIRRLGEP_					0	0	0		nc|ENSG00000157326|Q9BTZ2-2|DHRS4;ENSG00000157326|ENST00000313250|DHRS4;nc|ENSG00000157326|Q9BTZ2-6|DHRS4;ENST00000559270.5_2_14:24507775-24520174:+|nuORF;nc|ENSG00000157326|Q9BTZ2-3|DHRS4;nc|ENSG00000157326|Q9BTZ2-5|DHRS4;nc|ENSG00000157326|Q9BTZ2-8|DHRS4;nc|ENSG00000157326|Q9BTZ2-4|DHRS4;nc|ENSG00000285467|P0CG22|DHRS4L1	nc|ENSG00000157326|Q9BTZ2-2|DHRS4	nc|ENSG00000157326|Q9BTZ2-2|DHRS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8720092773438	2	605.872571	1209.73059	-0.27427	-0.00016617	-0.55664	-0.00033725	-0.83091	-0.00050343	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	1.1295	1	12265	12265		26.063	1.5442	1	990980			79734	6590	55640	55733	88030	88030					0.13411278682542616
TLRITLAH	8	Unmodified	_TLRITLAH_					0	0	0			REV__ENST00000518114.1_1_2:190619886-190627438:-|nuORF	REV__ENST00000518114.1_1_2:190619886-190627438:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7714538574219	2	462.784902	923.55525	-0.63992	-0.00029614	0.62507	0.00028927	-0.01485	-6.8723E-06	462.78509902516873	24.906	0.59573	24.906	24.653	25.248	0					20	13	2	0	0	0	0.027866	1	1143	1143		31.955	12.595	1	87452	+		79735	23006	55641	55734	88031	88031					0.0904148388832482
TLRLARPAPG	10	Unmodified	_TLRLARPAPG_					0	0	0		ENST00000282928.4_1_3:147127600-147127744:+|nuORF	ENST00000282928.4_1_3:147127600-147127744:+|nuORF	ENST00000282928.4_1_3:147127600-147127744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3118896484375	2	526.322183	1050.62981	-1.037	-0.0005458	0.77893	0.00040997	-0.25808	-0.00013583	526.3223464126462	36.375	0.82668	36.332	35.864	36.69	-0.042454					51	22	3	0	0	0	0.03519	1	2920	2920		36.447	4.9169	1	477900			79736	11730	55642	55735	88032	88032					0.10652246699692114
TLRLFEELL	9	Unmodified	_TLRLFEELL_					0	0	0		ENSG00000158863|ENST00000289921|FHIP2B;ENST00000462914.3_1_8:21957359-21958496:+|nuORF;ENST00000491733.2_1_8:21958038-21958496:+|nuORF	ENSG00000158863|ENST00000289921|FHIP2B	ENSG00000158863|ENST00000289921|FHIP2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3294067382812	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	0.87448	1	11345	11345		34.173	0.25091	1	17705000			79737	6708	55643	55736	88033	88033					0.0881915819995811
TLRLTINAE	9	Unmodified	_TLRLTINAE_					0	0	0		GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant;GABRG1|p.N214Mfs*12|1|0.48|ENSG00000163285|chr4:46058607-46058607|T/-|frameshift_variant;GABRG1|p.D265Lfs*3|1|0.13|ENSG00000163285|chr4:46058341-46058342|-/GG|frameshift_variant;GABRG1|p.D265Efs*32|1|0.11|ENSG00000163285|chr4:46058338-46058339|-/T|frameshift_variant;ENSG00000163285|ENST00000295452|GABRG1;nc|ENSG00000182256|Q99928-2|GABRG3;ENSG00000182256|ENST00000615808|GABRG3	GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2972412109375	2	515.798206	1029.58186	-0.60688	-0.00031303	-2.3892	-0.0012323	-2.9961	-0.0015454	515.7982155305219	26.721	0.99371	26.558	26.307	27.301	-0.16331					63	23	4	0	0	0	0.53979	1	1403	1403		56.721	3.6321	1	1998600			79738	7055	55644	55737	88034	88034					0.06825127989009161
TLRLTSEQL	9	Unmodified	_TLRLTSEQL_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MSMS	OPSCC_40_ClassI_Rep-1	4	530.7999877929688	2	530.803488	1059.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.97	1	101.84	101.34	102.34	-0.12931								0	0	0	0.65887	1	12657	12657		29.17	0.020503	1				79739	4784	55645	55738	88035	88035					0.0650111064342127
TLRLWDSR	8	Unmodified	_TLRLWDSR_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2413940429688	2	523.790715	1045.56688	-0.63311	-0.00033162	4.4695	0.0023411	3.8364	0.0020095	524.294915720671	30.555	0.32795	30.31	30.079	30.407	-0.24415					10	7	2	0	0	0	0.027866	1	1939	1939		17.365	0	1	318450			79740	6012	55646	55739	88036	88036					0.04591680911653384
TLRLWDSR	8	Unmodified	_TLRLWDSR_					0	0	0		nc|ENSG00000148225|Q8NA23-2|WDR31;ENSG00000148225|ENST00000374193|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	nc|ENSG00000148225|Q8NA23-2|WDR31	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.790715	1045.56688	-0.034048	-1.7834E-05	5.7053	0.0029884	5.6713	0.0029706	523.7940359843096	30.514	0.20675	30.365	30.18	30.386	-0.14952	0.027128	0.00083762	NaN	15.642	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346030			79741	6012	55646	55739							0.04591680911653384
TLRMKKLN	8	Unmodified	_TLRMKKLN_					0	0	0		nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-2|INF2	nc|ENSG00000203485|Q27J81-2|INF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.32318115234375	2	502.307687	1002.60082	-0.65417	-0.00032859	-3.9466	-0.0019824	-4.6008	-0.002311	502.3057877323519	73.243	0.55211	73.053	72.844	73.396	-0.19027					20	13	2	0	0	0	0.027866	1	8635	8635		21.96	3.6355	1	324110			79742	10270	55647	55740	88037	88037					0.09962386079052976
TLRRAAGSSA	10	Unmodified	_TLRRAAGSSA_					0	0	0		SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|17|2|sense	SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|17|2|sense	SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|17|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.3009033203125	2	495.277972	988.541391	0.9594	0.00047517	1.433	0.00070975	2.3924	0.0011849	495.27915654090214	96.917	0.13383	96.794	96.706	96.84	-0.12368					4	2	2	0	0	0	0.03519	1	11998	11998		40.058	1.252	1	12803			79743	38037	55648	55741	88038	88038					0.0466620638923132
TLRRFLDP	8	Unmodified	_TLRRFLDP_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.30181884765625	2	509.295633	1016.57671	-0.51047	-0.00025998	4.4585	0.0022707	3.948	0.0020107	509.2973279461432	56.314	0.21513	56.158	55.995	56.21	-0.15601					7	5	2	0	0	0	0.027866	1	6218	6218		40.573	0	1	107670	+		79744	21986	55649	55742	88039	88039					0.06908868917037125
TLRRGLTAHGI	11	Unmodified	_TLRRGLTAHGI_					0	0	0		ENST00000535516.5_1_13:111293886-111298616:-|nuORF;ENST00000540006.5_1_13:111293886-111296904:-|nuORF;ENST00000541239.5_1_13:111293886-111295180:-|nuORF;ENSG00000134905|ENST00000257347|CARS2	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	ENST00000535516.5_1_13:111293886-111298616:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8565673828125	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0183	1	11382	11382		32.751	3.5805	1	5598500			79745	16350	55650	55743	88040	88040					0.11018705648461946
TLRRGPGSR	9	Unmodified	_TLRRGPGSR_					0	0	0		SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2904052734375	2	500.293956	998.57336	0.40986	0.00020505	-1.2273	-0.000614	-0.81741	-0.00040895	500.2930057832927	85.11	0.40479	84.908	84.76	85.165	-0.20175					15	9	2	0	0	0	0.024319	1	10292	10292		39.253	12.56	1	242340			79746	6529	55651	55744	88041	88041					0.07401618863048043
TLRRHVETKV	10	Unmodified	_TLRRHVETKV_					0	0	0		nc|ENSG00000169246|Q92617-2|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3;nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000254206|ENST00000698511|NPIPB11;ENSG00000185864|ENST00000682606|NPIPB4;NPIPB6|p.M235Rfs*23|1|0.15|ENSG00000198156|chr16:28343181-28343181|A/-|frameshift_variant;ENSG00000233232|ENST00000452313|NPIPB7;ENSG00000198156|ENST00000695563|NPIPB6;ENSG00000196993|ENST00000357796|NPIPB9;ENSG00000255524|ENST00000683297|NPIPB8;ENSG00000196436|ENST00000692376|NPIPB15	nc|ENSG00000169246|Q92617-2|NPIPB3;ENSG00000255524|ENST00000683297|NPIPB8;ENSG00000196436|ENST00000692376|NPIPB15	ENSG00000255524|ENST00000683297|NPIPB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8692016601562	2	619.870028	1237.7255	-0.98359	-0.0006097	-0.34317	-0.00021272	-1.3268	-0.00082242	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	1.1266	1	11473	11473		29.17	1.2878	1	1625000			79747	7912;10893;9875	55652	55745	88042	88042					0.11614974819917734
TLRRLALPS	9	Unmodified	_TLRRLALPS_					0	0	0			REV__ENSG00000182223|ENST00000327939|ZAR1	REV__ENSG00000182223|ENST00000327939|ZAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.8131103515625	2	513.824558	1025.63456	-0.51752	-0.00026592	0.68982	0.00035445	0.1723	8.853E-05	513.824846658364	60.486	0.32585	60.232	60.053	60.378	-0.25373					12	7	2	0	0	0	0.024541	1	6693	6693		21.96	2.5999	1	114510	+		79748	27459	55653	55746	88043	88043					0.12277130842448969
TLRRLALPS	9	Unmodified	_TLRRLALPS_					0	0	0			REV__ENSG00000182223|ENST00000327939|ZAR1	REV__ENSG00000182223|ENST00000327939|ZAR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.824558	1025.63456	-0.3197	-0.00016427	0.87367	0.00044892	0.55397	0.00028465	513.8248786097129	60.463	0.32957	60.257	60.091	60.421	-0.20599	0.012063	7.9483E-05	NaN	21.96	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109330	+		79749	27459	55653	55746							0.12277130842448969
TLRRLSKV	8	Unmodified	_TLRRLSKV_					0	0	0			REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2873840332031	2	486.819276	971.623999	0.93031	0.00045289	3.2134	0.0015643	4.1437	0.0020172	486.8206051637277	36.961	0.66716	36.752	36.525	37.192	-0.2092					35	16	3	0	0	0	0.027866	1	2971	2971		21.96	0	1	312740	+		79750	35913	55654	55747	88044	88044					0.13705148188034855
TLRRQPVL	8	Unmodified	_TLRRQPVL_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.81280517578125	2	491.811451	981.608348	0.081424	4.0045E-05	3.1864	0.0015671	3.2678	0.0016071	491.8125575242196	102.02	2.0218	102.01	100.81	102.83	-0.0054474					63	46	2	0	0	0	0.95679	1	12983	12983		44.117	5.3107	1	346510	+		79751	23612	55655	55748	88045	88045					0.11680861670993181
TLRRRIREHLL	11	Unmodified	_TLRRRIREHLL_					0	0	0		ENSG00000175471|ENST00000515393|MCTP1;MCTP1-TNC|1|fusion	ENSG00000175471|ENST00000515393|MCTP1	ENSG00000175471|ENST00000515393|MCTP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.26873779296875	3	488.307426	1461.90045	0.051351	2.5075E-05	-2.3731	-0.0011588	-2.3217	-0.0011337	488.6399319003099	46.883	0.34359	46.883	46.659	47.003	0					17	8	4	0	0	0	0.024886	1	4637	4637		6.3209	0	1	196760			79752	8562	55656	55749	88046	88046					0.18797394684997926
TLRSRLLD	8	Unmodified	_TLRSRLLD_					0	0	0		ENST00000557978.6_1_19:19680348-19681054:-|nuORF;ENST00000558222.1_1_19:19675736-19681567:-|nuORF;ENSG00000105717|ENST00000251203|PBX4	ENST00000557978.6_1_19:19680348-19681054:-|nuORF	ENST00000557978.6_1_19:19680348-19681054:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.30657958984375	2	487.293091	972.571629	-0.045347	-2.2097E-05	1.8782	0.00091521	1.8328	0.00089312	487.2929163722171	72.723	0.28938	72.732	72.57	72.859	0.0096512					8	6	2	0	0	0	0.027866	1	8789	8789		26.693	3.6562	1	31275			79753	2715	55657	55750	88047	88047					0.08424565054417599
TLRTAQPII	9	Unmodified	_TLRTAQPII_					0	0	0		nc|ENSG00000198520|Q6PIY5-2|ARMH1;ENST00000357508.5_1_1:45155363-45190065:+|nuORF;ENSG00000198520|ENST00000535358|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.81097412109375	2	506.811116	1011.60768	-0.18697	-9.4759E-05	-0.59738	-0.00030276	-0.78435	-0.00039752	506.8109227453703	54.675	1.2537	54.525	54.156	55.409	-0.15036					111	35	5	0	0	0	0.25032	1	5989	5989		82.305	10.428	1	35785000			79754	10142	55658	55751	88048	88048					0.10234022231293238
TLRTQKRSP	9	Unmodified	_TLRTQKRSP_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2445678710938	2	543.822547	1085.63054	-1.0508	-0.00057143	3.3152	0.0018029	2.2644	0.0012314	543.8243011833408	67.26	0.62592	67.022	66.796	67.422	-0.23814					36	14	3	0	0	0	0.024427	1	7766	7766		9.1829	0	1	636390	+		79755	24305	55659	55752	88049	88049					0.09115041348741215
TLRTVTIH	8	Unmodified	_TLRTVTIH_					0	0	0		ENST00000526038.1_1_9:100136781-100138195:+|nuORF	ENST00000526038.1_1_9:100136781-100138195:+|nuORF	ENST00000526038.1_1_9:100136781-100138195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.74835205078125	2	470.782359	939.550165	0.33147	0.00015605	-0.4234	-0.00019933	-0.091933	-4.3281E-05	470.78213706794725	45.396	0.60637	45.44	45.11	45.716	0.04388					32	17	3	0	0	0	0.027866	1	4331	4331		37.159	8.0096	1	408900			79756	16108	55660	55753	88050	88050					0.07797180025715988
TLRTWPCME	9	Unmodified	_TLRTWPCME_					0	0	0			REV__ENST00000483414.1_1_7:73520275-73520419:+|nuORF	REV__ENST00000483414.1_1_7:73520275-73520419:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.311279296875	2	568.764994	1135.51544	-0.012936	-7.3574E-06	0.93021	0.00052907	0.91727	0.00052171	568.7653327616979	39.376	0.63708	39.15	38.874	39.511	-0.2257					37	16	3	0	0	0	0.024477	1	3282	3282		27.882	0	1	781910	+		79757	33508	55661	55754	88051	88051					-0.04690147168935255
TLRVRQVKVL	10	Unmodified	_TLRVRQVKVL_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.56793212890625	3	404.603068	1210.78738	1.4164	0.00057309	-1.9961	-0.00080763	-0.57967	-0.00023454	404.6021217011721	42.095	0.2016	42.095	42.02	42.222	0					7	5	2	0	0	0	0.03519	1	3856	3856		19.263	0	1	72328			79758	774	55662	55755	88052	88052					0.1904132623908481
TLRWYVRI	8	Unmodified	_TLRWYVRI_					0	0	0			REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF	REV__ENST00000392876.7_1_12:104169265-104169487:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	553.830078125	2	553.827101	1105.63965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.428	1	86.286	85.786	86.786	-0.14217								0	0	0	0.71153	1	10500	10500		40.573	3.4135	1		+		79759	31623	55663	55756	88053	88053					0.09105434705065818
TLRYYGDIL	9	Unmodified	_TLRYYGDIL_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2;REV__JAK2|p.A733Vfs*15|1|0.05|ENSG00000096968|chr9:5080290-5080311|TTTGGCAACAGACAAATGGAGT/-|frameshift_variant;REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	REV__JAK2|p.P524Yfs*12|1|0.09|ENSG00000096968|chr9:5069977-5069999|CTCACCAACATTACAGAGGCCTA/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.2999877929688	2	557.300581	1112.58661	-0.089119	-4.9666E-05	-0.58402	-0.00032547	-0.67313	-0.00037514	557.30012876976	68.366	1.044	68.073	67.781	68.825	-0.29267					71	26	4	0	0	0	0.39228	1	8161	8161		66.429	2.8954	1	3583600	+		79760	20990;36164;36165	55664	55757	88054	88054					0.03482012131757983
TLSAELSSRL	10	Unmodified	_TLSAELSSRL_					0	0	0		RUNX1|p.S295Ffs*278|1|0.15|ENSG00000159216|chr21:34799303-34799304|-/A|frameshift_variant;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1	RUNX1|p.S295Ffs*278|1|0.15|ENSG00000159216|chr21:34799303-34799304|-/A|frameshift_variant	RUNX1|p.S295Ffs*278|1|0.15|ENSG00000159216|chr21:34799303-34799304|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.3241577148438	2	538.800946	1075.58734	-0.63245	-0.00034076	-3.2822	-0.0017685	-3.9147	-0.0021092	538.7990839197373	101.25	0.64511	101.26	100.92	101.56	0.0090332					25	14	2	0	0	0	0.03519	1	12880	12880		29.17	0	1	181860			79761	6730	55665	55758	88055	88055					0.05256806780789702
TLSAKPVQTK	10	Unmodified	_TLSAKPVQTK_					0	0	0			REV__ENST00000242505.10_1_10:74934515-74952389:+|nuORF	REV__ENST00000242505.10_1_10:74934515-74952389:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7967529296875	2	536.821681	1071.62881	-0.95673	-0.00051359	1.2637	0.00067838	0.30698	0.00016479	536.8221668180258	66.35	0.4632	66.136	65.915	66.378	-0.21334					19	11	2	0	0	0	0.03519	1	7583	7583		19.104	0	1	239960	+		79762	29455	55666	55759	88056	88056					0.09585987540117458
TLSALSGHFF	10	Unmodified	_TLSALSGHFF_					0	0	0			REV__ENSG00000158258|ENST00000458420|CLSTN2	REV__ENSG00000158258|ENST00000458420|CLSTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7922973632812	2	540.279649	1078.54475	-0.06463	-3.4918E-05	2.0258	0.0010945	1.9611	0.0010596	540.7839229461946	65.651	0.50688	65.651	65.292	65.799	0					20	13	2	0	0	0	0.03519	1	7801	7801		40.778	11.629	1	161240	+		79763	25184	55667	55760	88057	88057					0.00861456443226416
TLSCELSH	8	Unmodified	_TLSCELSH_					0	0	0			REV__ENSG00000173908|ENST00000306658|KRT28	REV__ENSG00000173908|ENST00000306658|KRT28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.63604736328125	2	445.207835	888.401117	-0.64414	-0.00028678	-3.4749	-0.0015471	-4.1191	-0.0018338	445.2061245014743	40.439	0.39632	40.29	40.078	40.474	-0.1497					13	10	2	0	0	0	0.027866	1	3480	3480		12.959	0	1	169770	+	+	79764	19599	55668	55761	88058	88058					-0.04754713659360732
TLSDFLTEI	9	Unmodified	_TLSDFLTEI_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.77099609375	2	519.771322	1037.52809	-0.84602	-0.00043974	0.61636	0.00032036	-0.22966	-0.00011937	519.771339499635	94.219	1.3775	94.225	93.85	95.228	0.0059814					89	32	4	0	0	0	0.034181	2	11906	11894;11906		138.24	31.827	1	1574800			79765	10737	55669	55762	88059;88060	88060					0.010829107666040727
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.300048828125	2	487.30005	972.585547	-0.35521	-0.00017309	-0.017747	-8.6482E-06	-0.37295	-0.00018174	487.2999792980391	68.768	1.6599	68.768	68.295	69.954	0					139	42	6	0	0	0	0.013094	6	8261	8236;8249;8261;8272;8284;8300		195.81	61.003	1	8769700			79766	4418	55670	55763	88061;88062;88063;88064;88065;88066	88063					0.09815797762848888
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.29998779296875	2	487.30005	972.585547	0.26065	0.00012702	-0.64296	-0.00031332	-0.38231	-0.0001863	487.29968046489387	69.098	1.6339	68.805	68.366	70	-0.29267					141	41	5	0	0	0	0.013887	6	8255	8255;8267;8280;8293;8306;8318		180.93	64.022	1	8388200			79767	4418	55670	55763	88067;88068;88069;88070;88071;88072	88067					0.09815797762848888
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2998962402344	2	487.30005	972.585547	-0.48166	-0.00023472	0.21359	0.00010408	-0.26807	-0.00013063	487.30011203405707	68.806	1.8802	68.821	68.154	70.034	0.015129					149	48	6	0	0	0	0.013094	6	8202	8167;8178;8191;8202;8214;8228		176.09	54.406	1	8480300			79768	4418	55670	55763	88073;88074;88075;88076;88077;88078	88076					0.09815797762848888
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.30005	972.585547	-0.93696	-0.00045658	0.81106	0.00039523	-0.1259	-6.135E-05	487.30035729023695	69.098	0.58657	68.836	68.666	69.252	-0.26165	0.037722	0.00090386	NaN	176.09	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207240			79769	4418	55670	55763							0.09815797762848888
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.30005	972.585547	0.30415	0.00014821	-0.36384	-0.0001773	-0.059688	-2.9086E-05	487.2997341986121	69.078	0.6571	68.835	68.587	69.244	-0.24277	0.036105	-0.0002412	NaN	176.09	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160790			79770	4418	55670	55763							0.09815797762848888
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.30005	972.585547	0.17205	8.384E-05	-0.61081	-0.00029765	-0.43876	-0.00021381	487.2996902412731	68.957	0.57731	68.726	68.559	69.137	-0.23047	-0.072448	-0.0004819	NaN	176.09	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147070			79771	4418	55670	55763							0.09815797762848888
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_		TLSDIM(1)VSL		TLSDIM(120)VSL	0	0	1		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7618713378906	2	497.759901	993.505248	-0.77724	-0.00038688	0.6727	0.00033484	-0.10454	-5.2038E-05	497.75987359810966	75.314	1.8048	75.314	74.424	76.228	0					67	46	4	0	0	0	0.08613	2	9241	9241;9260		115.46	24.682	1	1877200			79772	5065	55671	55764	88079;88080	88079		209			0.008235683775069447
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_		TLSDIM(1)VSL		TLSDIM(120)VSL	0	0	1		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7618408203125	2	497.759901	993.505248	-0.41918	-0.00020865	0.17734	8.8272E-05	-0.24184	-0.00012038	497.7597188066672	75.528	1.4284	75.284	74.958	76.386	-0.24455					59	37	4	0	0	0	0.08613	1	9240	9240		115.46	21.453	1	2219800			79773	5065	55671	55764	88081	88081		209			0.008235683775069447
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_					0	0	1		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.759901	993.505248	-0.37084	-0.00018459	0.30493	0.00015178	-0.065909	-3.2807E-05	497.7596593164158	75.626	0.51893	75.353	75.103	75.622	-0.27266	0.0055819	0.00025269	NaN	115.46	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295940			79774	5065	55671	55764				209			0.008235683775069447
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_					0	0	1		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	497.759901	993.505248	-0.27642	-0.00013759	-0.0038991	-1.9408E-06	-0.28032	-0.00013953	497.7597170541389	75.586	0.59306	75.327	75.117	75.71	-0.25865	-0.020683	-5.4759E-05	NaN	115.46	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345420			79775	5065	55671	55764				209			0.008235683775069447
TLSDIMVSL	9	Oxidation (M)	_TLSDIM(Oxidation (M))VSL_					0	0	1		ENSG00000136891|ENST00000374902|TEX10;nc|ENSG00000136891|Q9NXF1-2|TEX10	ENSG00000136891|ENST00000374902|TEX10	ENSG00000136891|ENST00000374902|TEX10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	497.759901	993.505248	-0.020578	-1.0243E-05	-0.13288	-6.6141E-05	-0.15346	-7.6384E-05	497.7595858262912	75.482	0.67324	75.306	74.986	75.659	-0.17548	-0.041335	-0.00018316	NaN	115.46	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333680			79776	5065	55671	55764				209			0.008235683775069447
TLSDIVVTL	9	Unmodified	_TLSDIVVTL_					0	0	0		ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.78466796875	2	480.784233	959.553913	0.84258	0.0004051	-0.83762	-0.00040271	0.0049584	2.3839E-06	480.78367888917364	84.755	0.74088	84.755	84.341	85.082	0					53	17	4	0	0	0	0.13494	5	10618	10606;10618;10631;10642;10656		102.77	23.322	1	2852300			79777	5119	55672	55765	88082;88083;88084;88085;88086	88083					0.07251805008900192
TLSDIVVTL	9	Unmodified	_TLSDIVVTL_					0	0	0		ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7845764160156	2	480.784233	959.553913	-0.4467	-0.00021477	0.41865	0.00020128	-0.028052	-1.3487E-05	480.78427115440985	84.765	0.78377	84.692	84.264	85.047	-0.072769					61	18	6	0	0	0	0.034181	4	10573	10573;10582;10595;10608		138.24	35.469	1	2819200			79778	5119	55672	55765	88087;88088;88089;88090	88087					0.07251805008900192
TLSDIVVTL	9	Unmodified	_TLSDIVVTL_					0	0	0		ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7843933105469	2	480.784233	959.553913	-0.45088	-0.00021678	0.41012	0.00019718	-0.040759	-1.9596E-05	480.7842678651051	84.724	0.78677	84.749	84.291	85.078	0.025536					57	18	5	0	0	0	0.06122	4	10529	10518;10529;10541;10553		124.59	39.235	1	3023800			79779	5119	55672	55765	88091;88092;88093;88094	88092					0.07251805008900192
TLSDIVVTL	9	Unmodified	_TLSDIVVTL_					0	0	0		ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	480.784233	959.553913	0.87545	0.0004209	-1.1203	-0.00053865	-0.2449	-0.00011774	480.7834945258941	84.798	1.4195	84.594	84.124	85.543	-0.20329	-0.069595	-0.00069809	NaN	138.24	76	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154400			79780	5119	55672	55765							0.07251805008900192
TLSDIVVTL	9	Unmodified	_TLSDIVVTL_					0	0	0		ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.784233	959.553913	0.66672	0.00032055	-0.88114	-0.00042364	-0.21442	-0.00010309	480.78363904938936	84.735	1.2495	84.577	84.192	85.442	-0.15869	-0.087256	-0.00046808	NaN	138.24	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1378100			79781	5119	55672	55765							0.07251805008900192
TLSDIVVTL	9	Unmodified	_TLSDIVVTL_					0	0	0		ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.784233	959.553913	0.76672	0.00036863	-0.89586	-0.00043072	-0.12914	-6.2091E-05	480.78366301552865	84.754	1.5072	84.616	84.237	85.745	-0.13789	-0.047487	-0.00048224	NaN	138.24	73	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1196500			79782	5119	55672	55765							0.07251805008900192
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.3084716796875	2	540.308406	1078.60226	-0.23815	-0.00012868	-0.4807	-0.00025972	-0.71885	-0.0003884	540.3079179339363	72.47	0.87788	72.47	71.904	72.782	0					55	21	3	0	0	0	0.077175	2	8811	8800;8811		118.74	22.553	1	4433400			79783	11006	55673	55766	88095;88096	88096					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.30859375	2	540.308406	1078.60226	0.077515	4.1882E-05	-0.28257	-0.00015268	-0.20506	-0.00011079	540.3081391601615	72.767	1.3102	72.485	72.1	73.411	-0.28124					66	32	3	0	0	0	0.062622	3	8822	8812;8822;8834		124.08	41.333	1	4442800			79784	11006	55673	55766	88097;88098;88099	88098					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.3084716796875	2	540.308406	1078.60226	-0.095667	-5.1689E-05	-0.19311	-0.00010434	-0.28878	-0.00015603	540.3082810893201	72.49	0.72373	72.5	72.094	72.818	0.0097733					53	17	4	0	0	0	0.027092	2	8734	8734;8745		143.89	43.277	1	5169700			79785	11006	55673	55766	88100;88101	88100					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.3088989257812	2	540.308406	1078.60226	-0.47747	-0.00025798	0.35896	0.00019395	-0.11851	-6.4033E-05	540.3085665142206	72.705	1.6546	72.428	72.07	73.724	-0.2769					110	39	4	0	0	0	0.1158	7	8510	8499;8510;8522;8534;8546;8558;8570		107.01	40.578	1	7118500			79786	11006	55673	55766	88102;88103;88104;88105;88106;88107;88108	88103					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.3084716796875	2	540.308406	1078.60226	-0.30434	-0.00016444	0.026257	1.4187E-05	-0.27808	-0.00015025	540.3083912995808	72.712	1.2141	72.447	72.042	73.256	-0.26479					101	28	5	0	0	0	0.067814	5	8561	8514;8537;8549;8561;8586		122.18	40.533	1	9780500			79787	11006	55673	55766	88109;88110;88111;88112;88113	88112					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1	ENST00000488788.2_1_20:629360-656142:-|nuORF	ENST00000488788.2_1_20:629360-656142:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.3084106445312	2	540.308406	1078.60226	-1.3809	-0.00074612	0.77175	0.00041698	-0.60917	-0.00032914	540.3088441516943	72.512	1.6039	72.314	71.949	73.553	-0.1981					116	38	5	0	0	0	0.03849	7	8505	8471;8481;8493;8505;8517;8529;8542		134.81	47.056	1	13980000			79788	11006	55673	55766	88114;88115;88116;88117;88118;88119;88120	88117					0.06610298648797652
TLSDVVVGL	9	Unmodified	_TLSDVVVGL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.7803649902344	2	451.7633	901.512048	0.99016	0.00044732	-0.61482	-0.00027775	0.37534	0.00016956	451.7628888877363	78.104	1.0264	77.912	77.522	78.549	-0.1921					64	24	4	0	0	0	0.014958	1	9649	9649		110.34	0	1	904390			79789	3002	55674	55767	88121	88121					0.057352493203779886
TLSDVVVGL	9	Unmodified	_TLSDVVVGL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.7632751464844	2	451.7633	901.512048	0.021586	9.7519E-06	0.057136	2.5812E-05	0.078722	3.5564E-05	451.7632338087496	78.191	1.4413	77.929	77.571	79.013	-0.26154					75	33	3	0	0	0	0.021668	3	9315	9305;9315;9328		148.21	28.649	1	1830800			79790	3002	55674	55767	88122;88123;88124	88123					0.057352493203779886
TLSDVVVGL	9	Unmodified	_TLSDVVVGL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.7632751464844	2	451.7633	901.512048	0.49349	0.00022294	-0.36816	-0.00016632	0.12533	5.662E-05	451.7629982482496	78.17	1.235	77.938	77.543	78.778	-0.23214					81	28	5	0	0	0	0.033883	3	9322	9313;9322;9336		138.48	18.01	1	2049300			79791	3002	55674	55767	88125;88126;88127	88126					0.057352493203779886
TLSDVVVGL	9	Unmodified	_TLSDVVVGL_					0	0	0		ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4;nc|ENSG00000109911|Q96EB1-2|ELP4	ENSG00000109911|ENST00000640961|ELP4	ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.76300048828125	2	451.7633	901.512048	-0.03533	-1.5961E-05	0.022707	1.0258E-05	-0.012623	-5.7025E-06	451.7632073420296	78.096	1.5716	77.94	77.533	79.104	-0.15591					87	36	4	0	0	0	0.021668	3	9285	9285;9295;9309		148.21	24.217	1	2097100			79792	3002	55674	55767	88128;88129;88130	88128					0.057352493203779886
TLSEIKALL	9	Unmodified	_TLSEIKALL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3084411621094	2	494.307875	986.601197	0.13909	6.8755E-05	-0.2596	-0.00012832	-0.12051	-5.9569E-05	494.307663114306	68.357	0.83484	68.357	68.064	68.898	0					69	21	4	0	0	0	0.015901	6	8225	8180;8190;8202;8215;8225;8238		157.33	57.954	1	3237500			79793	18075	55675	55768	88131;88132;88133;88134;88135;88136	88135					0.10736084279915303
TLSEIKALL	9	Unmodified	_TLSEIKALL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.30841064453125	2	494.307875	986.601197	0.20891	0.00010326	-0.2888	-0.00014276	-0.079897	-3.9494E-05	494.3076945922406	68.794	0.84142	68.502	68.092	68.933	-0.29267					64	21	4	0	0	0	0.013094	5	8240	8203;8214;8227;8240;8253		171.38	72.01	1	3817900			79794	18075	55675	55768	88137;88138;88139;88140;88141	88140					0.10736084279915303
TLSEIKALL	9	Unmodified	_TLSEIKALL_					0	0	0		nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-4|ACTN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.30926513671875	2	494.307875	986.601197	0.23112	0.00011425	-0.33922	-0.00016768	-0.1081	-5.3434E-05	494.30766666361166	68.497	0.89816	68.515	68.08	68.978	0.018913					77	23	5	0	0	0	0.027092	4	8138	8126;8138;8150;8161		143.89	44.512	1	3432700			79795	18075	55675	55768	88142;88143;88144;88145	88143					0.10736084279915303
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7666931152344	2	502.766571	1003.51859	0.44829	0.00022539	-0.83711	-0.00042087	-0.38882	-0.00019548	502.76608478480097	58.488	1.552	58.488	58.193	59.745	0					112	41	4	0	0	0	0.0088851	5	6643	6619;6631;6643;6656;6670		258.1	107.49	1	15060000			79796	8010	55676	55769	88146;88147;88148;88149;88150	88148					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.76654052734375	2	502.766571	1003.51859	0.5563	0.00027969	-0.92035	-0.00046272	-0.36405	-0.00018303	502.76605641151906	58.744	1.4605	58.557	58.206	59.667	-0.18705					107	39	4	0	0	0	0.010658	5	6634	6622;6634;6646;6659;6673		258.1	114.21	1	12980000			79797	8010	55676	55769	88151;88152;88153;88154;88155	88152					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.76629638671875	2	502.766571	1003.51859	0.34757	0.00017475	-0.73489	-0.00036948	-0.38732	-0.00019473	502.76615770834246	58.413	1.5425	58.504	58.118	59.661	0.091217					113	41	4	0	0	0	0.0088851	5	6525	6515;6525;6536;6549;6563		241.3	110.27	1	13097000			79798	8010	55676	55769	88156;88157;88158;88159;88160	88157					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.7669677734375	2	502.766571	1003.51859	-0.25141	-0.0001264	0.93124	0.0004682	0.67984	0.0003418	502.76677538418375	58.8	0.79253	58.612	58.308	59.1	-0.18795					54	19	4	0	0	0	0.013094	2	6469	6469;6483		171.38	50.764	1	2959300			79799	8010	55676	55769	88161;88162	88161					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.76617431640625	2	502.766571	1003.51859	0.12396	6.2325E-05	0.359	0.00018049	0.48296	0.00024282	502.76666896046555	58.794	0.52349	58.612	58.308	58.831	-0.18133					34	12	3	0	0	0	0.015064	2	6470	6470;6488		201.49	65.924	1	3087900			79800	8010	55676	55769	88163;88164	88163					0.016971424811004
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.7666320800781	2	502.766571	1003.51859	0.33509	0.00016847	0.1886	9.4822E-05	0.52369	0.00026329	502.76650755812585	58.908	0.59515	58.667	58.341	58.936	-0.24165					45	14	4	0	0	0	0.013468	2	6468	6468;6489		225.24	94.205	1	2815600			79801	8010	55676	55769	88165;88166	88165					0.016971424811004
TLSEYVQDF	9	Unmodified	_TLSEYVQDF_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;PAIP1|p.H228*|1|0.24|ENSG00000172239|chr5:43543046-43543056|ATTGTCAGATG/-|frameshift_variant;PAIP1|p.S232Afs*73|1|0.26|ENSG00000172239|chr5:43543044-43543044|T/-|frameshift_variant	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2606811523438	2	551.258579	1100.50261	-1.4014	-0.00077254	-1.0698	-0.00058974	-2.4712	-0.0013623	551.2571673157507	91.31	0.37953	91.161	90.973	91.353	-0.1487					14	8	2	0	0	0	0.024477	1	11205	11205		27.882	0	1	141440			79802	8258	55677	55770	88167	88167					-0.04362563755807969
TLSFGLGETK	10	Unmodified	_TLSFGLGETK_					0	0	0			REV__ENST00000488558.2_1_13:113884071-113884122:+|nuORF	REV__ENST00000488558.2_1_13:113884071-113884122:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7949829101562	2	526.784764	1051.55498	-0.28343	-0.00014931	2.332	0.0012285	2.0486	0.0010792	526.7855169661152	35.662	0.78522	35.706	35.42	36.205	0.04406					30	20	2	0	0	0	0.03519	1	2772	2772		37.159	12.64	1	277980	+		79803	33650	55678	55771	88168	88168					0.03126019377805278
TLSGLILLAGY	11	Unmodified	_TLSGLILLAGY_					0	0	0		nc|ENSG00000157593|Q8TB61-5|SLC35B2;nc|ENSG00000157593|Q8TB61-4|SLC35B2;nc|ENSG00000157593|Q8TB61-3|SLC35B2;ENSG00000157593|ENST00000393812|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	nc|ENSG00000157593|Q8TB61-5|SLC35B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7833251953125	2	560.834257	1119.65396	-0.73976	-0.00041488	0.76864	0.00043108	0.028881	1.6197E-05	560.8341692633301	64.827	0.55502	64.572	64.346	64.901	-0.25563					17	13	2	0	0	0	0.024752	1	7373	7373		49.442	15.269	1	272860			79804	6609	55679	55772	88169	88169					0.09892042342721652
TLSHRKVTD	9	Unmodified	_TLSHRKVTD_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.3287963867188	2	528.793455	1055.57236	-0.042246	-2.234E-05	-2.1004	-0.0011107	-2.1427	-0.001133	528.7898632134988	77.554	0.38739	77.292	77.141	77.528	-0.26202					14	8	2	0	0	0	0.024438	1	9239	9239		36.447	20.805	1	86428			79805	6963	55680	55773	88170	88170					0.046793597034593404
TLSIQRVE	8	Unmodified	_TLSIQRVE_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.28485107421875	2	473.271824	944.529095	0.42214	0.00019979	-3.1642	-0.0014975	-2.7421	-0.0012977	473.26948921554407	50.619	0.22788	50.619	50.512	50.74	0					9	6	2	0	0	0	0.027866	1	5315	5315		31.955	1.4512	1	87887			79806	6282	55681	55774	88171	88171					0.05461169926184084
TLSKGGVLVV	10	Unmodified	_TLSKGGVLVV_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7739562988281	2	486.808042	971.601532	-0.39907	-0.00019427	0.12381	6.0272E-05	-0.27526	-0.000134	486.80793340292087	27.083	0.46235	26.914	26.68	27.142	-0.16816					26	10	3	0	0	0	0.03519	1	1489	1489		20.947	0	1	510020	+		79807	19737	55682	55775	88172	88172					0.11459503999765275
TLSKKRLNI	9	Unmodified	_TLSKKRLNI_					0	0	0			REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.278564453125	2	536.84549	1071.67643	-1.6552	-0.00088858	1.6102	0.00086443	-0.044988	-2.4152E-05	536.8461933587166	24.827	0.53378	24.78	24.533	25.067	-0.047148					25	11	3	0	0	0	0.024495	1	1102	1102		26.693	0	1	151000	+		79808	26798	55683	55776	88173	88173					0.14345686530987223
TLSKLLGSL	9	Unmodified	_TLSKLLGSL_					0	0	0		ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2534484863281	2	466.294768	930.574983	-0.18481	-8.6176E-05	0.52097	0.00024292	0.33616	0.00015675	466.29481890702766	39.928	0.5034	39.703	39.501	40.004	-0.225					28	12	3	0	0	0	0.023596	1	3448	3448		27.882	0	1	360480			79809	5003	55684	55777	88174	88174					0.10691815108430092
TLSKSTAI	8	Unmodified	_TLSKSTAI_					0	0	0		ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENST00000510565.5_1_4:3945062-3957086:-|nuORF;ENST00000309608.6_1_8:12285230-12291581:-|nuORF;nc|ENSG00000186523|Q8N7N1-2|FAM86B1;ENST00000506770.5_1_4:3949295-3954861:-|nuORF;ENST00000510506.5_1_4:3945015-3952874:-|nuORF	ENSG00000186523|ENST00000448228|FAM86B1	ENSG00000186523|ENST00000448228|FAM86B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.74273681640625	2	410.742368	819.470183	-0.30394	-0.00012484	1.6577	0.00068087	1.3537	0.00055603	410.74289312307116	38.119	0.85892	38.119	37.902	38.761	0					48	23	4	0	0	0	0.94517	1	3177	3177		45.952	3.4775	1	2972300			79810	5787	55685	55778	88175	88175					0.05322693631842412
TLSLAGGLIP	10	Unmodified	_TLSLAGGLIP_					0	0	0			REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.74835205078125	2	471.286943	940.559333	0.023685	1.1162E-05	-0.11674	-5.5018E-05	-0.093056	-4.3856E-05	471.286739769105	45.732	0.69978	45.471	45.116	45.815	-0.26118					61	19	4	0	0	0	0.03519	1	4321	4321		35.618	28.883	1	1424500	+		79811	19829	55686	55779	88176	88176					0.08667528591399787
TLSLGLEDLV	10	Unmodified	_TLSLGLEDLV_					0	0	0			REV__ENSG00000130724|ENST00000312547|CHMP2A	REV__ENSG00000130724|ENST00000312547|CHMP2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7852172851562	2	530.300247	1058.58594	-0.97386	-0.00051644	3.665	0.0019436	2.6911	0.0014271	530.3019123154442	53.645	0.43626	53.498	53.239	53.675	-0.14723					15	11	2	0	0	0	0.03519	1	5775	5775		51.335	15.717	1	111980	+		79812	23143	55687	55780	88177	88177					0.05899172692011234
TLSLKPLLF	9	Unmodified	_TLSLKPLLF_					0	0	0		ENSG00000178467|ENST00000383729|P4HTM;nc|ENSG00000178467|Q9NXG6-3|P4HTM;ENST00000609406.1_1_3:49028265-49028403:+|nuORF;ENST00000484115.5_1_3:49028265-49040202:+|nuORF;nc|ENSG00000178467|Q9NXG6-2|P4HTM;ENST00000472301.5_1_3:49027419-49042675:+|nuORF	ENSG00000178467|ENST00000383729|P4HTM	ENSG00000178467|ENST00000383729|P4HTM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2994384765625	2	516.328611	1030.64267	-0.18316	-9.4569E-05	-0.61041	-0.00031517	-0.79357	-0.00040974	516.3279730409046	68.08	0.90369	68.099	67.669	68.573	0.018913					40	23	2	0	0	0	0.024354	1	8035	8035		38.806	6.8513	1	1588100			79813	8815	55688	55781	88178	88178					0.12857265039201593
TLSLPRRR	8	Unmodified	_TLSLPRRR_					0	0	0		nc|ENSG00000116688|O95140-2|MFN2	nc|ENSG00000116688|O95140-2|MFN2	nc|ENSG00000116688|O95140-2|MFN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2724304199219	2	499.814525	997.614496	-0.45901	-0.00022942	2.6204	0.0013097	2.1614	0.0010803	499.81587142377896	39.41	0.33805	39.245	39.081	39.419	-0.16458					13	8	2	0	0	0	0.027866	1	3334	3334		31.955	9.995	1	63062			79814	18195	55689	55782	88179	88179					0.11559379902507771
TLSLSVYI	8	Unmodified	_TLSLSVYI_					0	0	0		nc|ENSG00000006576|Q8N3S3-6|PHTF2;nc|ENSG00000006576|Q8N3S3-5|PHTF2	nc|ENSG00000006576|Q8N3S3-6|PHTF2	nc|ENSG00000006576|Q8N3S3-6|PHTF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2589111328125	2	448.260394	894.506234	-0.45695	-0.00020483	-2.7573	-0.001236	-3.2142	-0.0014408	448.25902243845417	89.198	2.2068	89.035	88.471	90.677	-0.1626					108	52	4	0	0	0	1.0574	1	10858	10858		26.796	0	1	9232100			79815	18031	55690	55783	88180	88180					0.05476150808715374
TLSLVKTVV	9	Unmodified	_TLSLVKTVV_					0	0	0		ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2921447753906	2	480.310418	958.606283	0.5499	0.00026412	-3.0114	-0.0014464	-2.4615	-0.0011823	480.30762333002525	56.021	0.45896	56.021	55.645	56.104	0					16	12	2	0	0	0	0.024523	1	6194	6194		29.15	10.825	1	269030			79816	1275	55691	55784	88181	88181					0.12532388142517448
TLSMLGIKSL	10	Unmodified	_TLSMLGIKSL_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8172607421875	2	531.81501	1061.61547	-0.26415	-0.00014048	3.569	0.0018981	3.3049	0.0017576	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.77808	1	11013	11013		62.107	3.3255	1	3741200	+		79817	20764	55692	55785	88182	88182					0.0871241343654674
TLSNYKSN	8	Unmodified	_TLSNYKSN_					0	0	0			REV__CON__P00766	REV__CON__P00766	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7508850097656	2	463.732532	925.45051	-0.01856	-8.6069E-06	2.6496	0.0012287	2.6311	0.0012201	463.7333104082755	42.523	0.49146	42.391	42.183	42.674	-0.13219					19	13	2	0	0	0	0.027866	1	3884	3884		16.473	0	1	117940	+	+	79818	19535	55693	55786	88183	88183					-0.015196823789096925
TLSPDHGY	8	Unmodified	_TLSPDHGY_					0	0	0		ENSG00000113303|ENST00000340184|BTNL8;nc|ENSG00000113303|Q6UX41-4|BTNL8;nc|ENSG00000113303|Q6UX41-7|BTNL8;nc|ENSG00000113303|Q6UX41-6|BTNL8	ENSG00000113303|ENST00000340184|BTNL8	ENSG00000113303|ENST00000340184|BTNL8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.63629150390625	2	445.20615	888.397747	-1.1548	-0.00051412	1.4605	0.00065024	0.30575	0.00013612	445.206680234202	40.564	0.57611	40.334	40.12	40.696	-0.23022					26	15	2	0	0	0	0.027866	1	3520	3520		28.254	11.781	1	258030			79819	3279	55694	55787	88184	88184					-0.05091640441708023
TLSPGTGSLSP	11	Unmodified	_TLSPGTGSLSP_					0	0	0			REV__ENST00000314412.6_1_9:139925955-139926433:-|nuORF	REV__ENST00000314412.6_1_9:139925955-139926433:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2720947265625	2	508.766571	1015.51859	-0.54576	-0.00027766	-1.9216	-0.00097765	-2.4674	-0.0012553	508.7655172301587	48.154	3.5657	48.056	46.607	50.173	-0.097553					164	95	3	0	0	0	0.024044	1	5086	5086		58.23	5.2932	1	903630	+		79820	30244	55695	55788	88185	88185					0.011451424810957178
TLSPGTGSLSP	11	Unmodified	_TLSPGTGSLSP_					0	0	0			REV__ENST00000314412.6_1_9:139925955-139926433:-|nuORF	REV__ENST00000314412.6_1_9:139925955-139926433:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.766571	1015.51859	-0.87526	-0.00044531	2.943	0.0014973	2.0678	0.001052	508.76828042798746	47.7	0.18533	47.759	47.615	47.8	0.059097	-0.18264	0.0050806	NaN	58.23	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118500	+		79821	30244	55695	55788							0.011451424810957178
TLSPRGSLLD	10	Unmodified	_TLSPRGSLLD_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2747192382812	2	529.795663	1057.57677	0.069733	3.6944E-05	-0.51998	-0.00027548	-0.45024	-0.00023854	529.7953481132716	47.153	0.64125	47	46.659	47.3	-0.15301					33	15	3	0	0	0	0.03519	1	4651	4651		30.318	2.4355	1	490650			79822	8730	55696	55789	88186	88186					0.05028824126384279
TLSPSPTTLM	10	Unmodified	_TLSPSPTTLM_					0	0	0			REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.328369140625	2	524.273175	1046.5318	-0.92963	-0.00048738	0.40061	0.00021003	-0.52902	-0.00027735	524.2733174804024	79.395	0.75101	79.395	79.119	79.87	0					33	17	2	0	0	0	0.03519	1	9875	9875		34.173	13.226	1	327320	+		79823	20528	55697	55790	88187	88187					0.01039257268826077
TLSPVSTFSL	10	Unmodified	_TLSPVSTFSL_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-4|ZGRF1	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2909545898438	2	526.28714	1050.55973	-0.088588	-4.6623E-05	0.72422	0.00038115	0.63563	0.00033452	526.2871915588439	74.61	1.1814	74.334	74.001	75.183	-0.27573					79	27	5	0	0	0	1.0393	1	8806	8806		40.778	2.9666	1	3024900			79824	5262	55698	55791	88188	88188					0.03646903520575506
TLSRAAEDD	9	Unmodified	_TLSRAAEDD_					0	0	0		ENST00000559665.6_1_15:64985359-64995395:-|nuORF;ENST00000560781.6_1_15:64988219-64995395:-|nuORF	ENST00000559665.6_1_15:64985359-64995395:-|nuORF	ENST00000559665.6_1_15:64985359-64995395:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.758056640625	2	489.230353	976.446153	-0.44864	-0.00021949	-1.0878	-0.00053219	-1.5364	-0.00075168	489.2296264096057	43.086	0.8332	43.086	42.715	43.548	0					56	22	3	0	0	0	0.024374	1	4034	4034		19.104	0	1	528360			79825	16784	55699	55792	88189	88189					-0.04301191592480791
TLSSACRVSL	10	Unmodified	_TLSSACRVSL_					0	0	0		ENST00000552029.1_1_12:107380591-107380840:-|nuORF	ENST00000552029.1_1_12:107380591-107380840:-|nuORF	ENST00000552029.1_1_12:107380591-107380840:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2614135742188	2	518.776416	1035.53828	-0.75109	-0.00038965	2.2405	0.0011623	1.4894	0.00077269	518.7770423538419	57.686	0.54792	57.509	57.206	57.754	-0.17776					22	13	2	0	0	0	0.03519	1	6348	6348		49.536	16.724	1	1537000			79826	16612	55700	55793	88190	88190					0.021931952202066896
TLSSRKDAL	9	Unmodified	_TLSSRKDAL_					0	0	0			REV__TBC1D25|p.E153D|1|0.08|ENSG00000068354|chrX:48558967-48558967|G/C|missense_variant	REV__TBC1D25|p.E153D|1|0.08|ENSG00000068354|chrX:48558967-48558967|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2668151855469	2	495.782556	989.550559	0.64313	0.00031885	2.3467	0.0011635	2.9898	0.0014823	495.7836756008753	49.186	0.70738	49.186	48.654	49.362	0					30	19	3	0	0	0	0.024427	1	5008	5008		42.396	1.618	1	666430	+		79827	37678	55701	55794	88191	88191					0.055365549549037496
TLSSTIIGVY	10	Unmodified	_TLSSTIIGVY_					0	0	0			REV__ENST00000479587.1_1_2:207025343-207025451:+|nuORF	REV__ENST00000479587.1_1_2:207025343-207025451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2867431640625	2	527.294965	1052.57538	-0.37281	-0.00019658	-2.9756	-0.001569	-3.3484	-0.0017656	527.2932163615294	30.684	0.50014	30.758	30.502	31.002	0.074316					17	11	2	0	0	0	0.03519	1	1968	1968		15.642	0.77694	1	49868	+		79828	33402	55702	55795	88192	88192					0.05119190037635235
TLSSVISKP	9	Unmodified	_TLSSVISKP_					0	0	0			REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2882995605469	2	466.276575	930.538597	-0.10101	-4.71E-05	0.46684	0.00021768	0.36583	0.00017058	466.27620932877454	62.154	0.55456	61.927	61.495	62.049	-0.22663					22	14	2	0	0	0	0.024021	1	7164	7164		49.442	0	1	166760	+		79829	28424	55703	55796	88193	88193					0.07054938211729223
TLSVALISLD	10	Unmodified	_TLSVALISLD_					0	0	0		ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.3078002929688	2	516.30279	1030.59103	-0.94609	-0.00048847	0.95854	0.0004949	0.01245	6.428E-06	516.303523716496	62.955	0.28559	62.716	62.492	62.778	-0.23926					11	6	2	0	0	0	0.03519	1	7295	7295		39.253	0	1	3473400			79830	9053	55704	55797	88194	88194					0.07695476554658853
TLSVLKST	8	Unmodified	_TLSVLKST_					0	0	0		nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1;ENST00000358711.7_1_20:62572461-62575781:-|nuORF	nc|ENSG00000198276|Q9NWZ5-3|UCKL1	nc|ENSG00000198276|Q9NWZ5-3|UCKL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.1906433105469	2	424.758018	847.501483	-0.00076623	-3.2546E-07	2.058	0.00087413	2.0572	0.00087381	424.75885972991347	34.308	0.66544	34.101	33.86	34.525	-0.20696					25	16	2	0	0	0	0.027866	1	2536	2536		18.324	0.95945	1	254600			79831	18647	55705	55798	88195	88195					0.07163266665963874
TLTAFRGIS	9	Unmodified	_TLTAFRGIS_					0	0	0			REV__ENSG00000185800|ENST00000270223|DMWD	REV__ENSG00000185800|ENST00000270223|DMWD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.28460693359375	2	483.274367	964.53418	0.27693	0.00013383	-3.779	-0.0018263	-3.5021	-0.0016925	483.2730566688037	54.443	0.34017	54.541	54.393	54.733	0.098015					15	9	2	0	0	0	0.024438	1	5885	5885		36.447	23.488	1	306450	+		79832	27798	55706	55799	88196	88196					0.050494737888243435
TLTARRGLS	9	Unmodified	_TLTARRGLS_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.790283203125	2	487.790715	973.566878	0.33726	0.00016451	-0.60673	-0.00029596	-0.26947	-0.00013144	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	0.77768	1	10204	10204		40.778	1.7567	1	1999500			79833	2676	55707	55800	88197	88197					0.07903680911670108
TLTCLAGLSH	10	Unmodified	_TLTCLAGLSH_					0	0	0		ENST00000310455.3_1_8:8997372-8997567:-|nuORF	ENST00000310455.3_1_8:8997372-8997567:-|nuORF	ENST00000310455.3_1_8:8997372-8997567:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2902526855469	2	508.265684	1014.51682	-1.1428	-0.00058086	-2.65	-0.0013469	-3.7929	-0.0019278	508.26416873312763	43.749	0.47562	43.749	43.511	43.987	0					18	12	2	0	0	0	0.03519	1	4095	4095		35.618	8.9254	1	241960			79834	12061	55708	55801	88198	88198					0.010138101915003972
TLTEEHRV	8	Unmodified	_TLTEEHRV_					0	0	0			REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	REV__ENST00000562523.1_1_16:69375146-69375552:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.31097412109375	2	492.759081	983.503609	-0.023539	-1.1599E-05	3.1947	0.0015742	3.1711	0.0015626	492.7606923832734	61.853	0.47849	61.596	61.342	61.821	-0.25725					19	11	2	0	0	0	0.027866	1	6954	6954		31.955	2.8053	1	197440	+		79835	23297	55709	55802	88199	88199					0.01119695403770038
TLTELILDA	9	Unmodified	_TLTELILDA_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7815246582031	2	494.78169	987.548827	0.051358	2.5411E-05	1.1666	0.00057723	1.218	0.00060264	494.7822549434837	57.883	0.9085	57.693	57.148	58.056	-0.19018					38	23	2	0	0	0	0.75397	1	6366	6366		42.396	5.3677	1	6473900			79836	2888	55710	55803	88200	88200					0.05455501146286679
TLTKAFPY	8	Unmodified	_TLTKAFPY_					0	0	0		ENST00000226328.8_1_4:71658906-71658981:+|nuORF	ENST00000226328.8_1_4:71658906-71658981:+|nuORF	ENST00000226328.8_1_4:71658906-71658981:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.748046875	2	470.760561	939.506569	-0.021745	-1.0237E-05	-4.2121	-0.0019829	-4.2338	-0.0019931	470.75839800870887	45.53	0.92067	45.431	45.154	46.075	-0.099449					54	25	4	0	0	0	0.027866	1	4302	4302		38.806	13.356	1	1422700			79837	11211	55711	55804	88201	88201					0.03439570528564673
TLTKLVVSS	9	Unmodified	_TLTKLVVSS_					0	0	0			REV__LPAR6|p.M206V|1|0.1|ENSG00000139679|chr13:48411808-48411808|T/C|missense_variant	REV__LPAR6|p.M206V|1|0.1|ENSG00000139679|chr13:48411808-48411808|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.2876281738281	2	474.292225	946.569897	0.12423	5.8923E-05	-0.35418	-0.00016799	-0.22995	-0.00010906	474.29191841321745	51.983	0.79293	51.799	51.561	52.354	-0.18404					44	20	4	0	0	0	0.32811	1	5365	5365		71.877	0	1	1262000	+		79838	36316	55712	55805	88202	88202					0.09447511245809892
TLTLAHQKN	9	Unmodified	_TLTLAHQKN_					0	0	0			REV__nc|ENSG00000176605|Q52M58|LINC02914	REV__nc|ENSG00000176605|Q52M58|LINC02914	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7871704101562	2	513.290548	1024.56654	-0.29652	-0.0001522	-3.8705	-0.0019867	-4.167	-0.0021389	513.2885492288913	71.133	1.1887	71.144	70.465	71.653	0.010735					74	29	4	0	0	0	0.024021	1	8546	8546		58.782	0	1	13003000	+		79839	36965	55713	55806	88203	88203					0.05524261191817459
TLTLLSLPF	9	Unmodified	_TLTLLSLPF_					0	0	0		ENST00000356208.9_1_20:55983752-55984013:+|nuORF	ENST00000356208.9_1_20:55983752-55984013:+|nuORF	ENST00000356208.9_1_20:55983752-55984013:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.7377624511719	2	502.804968	1003.59538	0.12578	6.3244E-05	-2.9289	-0.0014726	-2.8031	-0.0014094	502.80340370924245	36.285	0.21803	36.068	35.947	36.165	-0.21661					6	5	2	0	0	0	0.024535	1	2811	2811		18.324	0	1	61615			79840	12662	55714	55807	88204	88204					0.09372985768231956
TLTLTLLL	8	Unmodified	_TLTLTLLL_					0	0	0		ENST00000542466.2_1_12:58121618-58121762:+|nuORF	ENST00000542466.2_1_12:58121618-58121762:+|nuORF	ENST00000542466.2_1_12:58121618-58121762:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.25103759765625	2	444.294236	886.57392	-0.33289	-0.0001479	3.3593	0.0014925	3.0264	0.0013446	444.294704146112	29.119	0.19526	29.122	28.971	29.166	0.0031357					7	4	2	0	0	0	0.027866	1	1723	1723		1.619	0	1	220150			79841	16457	55715	55808	88205	88205					0.12609600739540383
TLTNKETCKV	10	Unmodified	_TLTNKETCKV_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8029174804688	2	568.802631	1135.59071	0.36649	0.00020846	0.66664	0.00037919	1.0331	0.00058764	568.8025662394693	97.221	1.5183	97.23	96.795	98.313	0.0089111					90	34	4	0	0	0	0.75651	1	12419	12419		63.534	10.597	1	1306700	+		79842	24800	55716	55809	88206	88206					0.02833733563147689
TLTPHPLFCD	10	Unmodified	_TLTPHPLFCD_					0	0	0			REV__ENST00000504524.5_1_3:129275157-129277480:-|nuORF	REV__ENST00000504524.5_1_3:129275157-129277480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	571.83251953125	2	572.278792	1142.54303	-1.1249	-0.00064374	-3.4272	-0.0019613	-4.5521	-0.002605	572.2766343079325	74.2	0.47238	74.209	73.924	74.397	0.0096512					14	10	2	0	0	0	0.03519	1	9000	9000		40.778	14.085	1	145010	+		79843	33985	55717	55810	88207	88207					-0.02253920637031115
TLTPSCREKP	10	Unmodified	_TLTPSCREKP_					0	0	0			REV__ENST00000272849.7_2_2:206642940-206643144:+|nuORF	REV__ENST00000272849.7_2_2:206642940-206643144:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	565.3139038085938	2	566.294973	1130.57539	-0.70493	-0.0003992	-2.0893	-0.0011832	-2.7943	-0.0015824	566.2935986833999	36.585	0.5068	36.585	36.298	36.805	0					21	13	2	0	0	0	0.03519	1	2888	2888		26.693	0	1	172550	+		79844	29816	55718	55811	88208	88208					0.015328667659787243
TLTTHMAVH	9	Unmodified	_TLTTHMAVH_					0	0	0		ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.75787353515625	2	505.758027	1009.5015	0.38029	0.00019234	-1.5209	-0.00076921	-1.1406	-0.00057688	505.75711112467206	100.82	0.60191	100.69	100.55	101.15	-0.12576					36	16	3	0	0	0	0.80658	1	12549	12549		38.806	6.8513	1	277730			79845	10008	55719	55812	88209	88209					-0.0028705660570267355
TLTTPVEGLD	10	Unmodified	_TLTTPVEGLD_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENST00000424316.1_1_X:115238747-115239044:-|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.73193359375	2	523.274229	1044.53391	-0.23582	-0.0001234	4.1415	0.0021671	3.9057	0.0020437	523.2765922008448	37.559	0.42809	37.366	37.152	37.58	-0.193					16	10	2	0	0	0	0.03519	1	3011	3011		49.442	8.6634	1	154470			79846	7517	55720	55813	88210	88210					0.013420092782780557
TLTVFPKP	8	Unmodified	_TLTVFPKP_					0	0	0			REV__MXRA5|p.W1887L|1|0.24|ENSG00000101825|chrX:3320025-3320025|C/A|missense_variant	REV__MXRA5|p.W1887L|1|0.24|ENSG00000101825|chrX:3320025-3320025|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.2703857421875	2	451.770929	901.527304	-0.73066	-0.00033009	-2.7789	-0.0012554	-3.5096	-0.0015855	451.76982552261353	105.22	0.34468	105.09	104.88	105.22	-0.13099					19	12	2	0	0	0	0.027866	1	13111	13111		11.511	0	1	74947	+		79847	36403	55721	55814	88211	88211					0.07260160908242597
TLTVKSLVQ	9	Unmodified	_TLTVKSLVQ_					0	0	0		ENST00000298552.7_1_9:135782705-135786445:-|nuORF	ENST00000298552.7_1_9:135782705-135786445:-|nuORF	ENST00000298552.7_1_9:135782705-135786445:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.79132080078125	2	494.8055	987.596446	-0.84509	-0.00041816	2.0757	0.0010271	1.2307	0.00060893	494.80633945993594	35.162	1.3764	35.14	34.172	35.549	-0.021767					84	35	3	0	0	0	0.024477	1	2589	2589		20.947	0	1	447080			79848	11875	55722	55815	88212	88212					0.10215200137156444
TLTVYAEL	8	Unmodified	_TLTVYAEL_					0	0	0			REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	455.2519226074219	2	455.250026	908.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.068	1	56.904	56.404	57.404	-0.16431								0	0	0	0.54229	1	6368	6368		52.299	0	1		+		79849	25081	55723	55816	88213	88213					0.027595604290468145
TLTWMLLEA	9	Unmodified	_TLTWMLLEA_					0	0	0		nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14854584-14867061:-|nuORF	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3253784179688	2	539.286085	1076.55762	-0.1307	-7.0487E-05	-2.0266	-0.0010929	-2.1574	-0.0011634	539.2844246821472	101.81	1.3046	101.69	101.37	102.67	-0.12666					38	31	2	0	0	0	0.024523	1	12620	12620		29.15	20.914	1	57585			79850	4248	55724	55817	88214	88214					0.022401515111141634
TLTWMLLEA	9	Unmodified	_TLTWMLLEA_					0	0	0		nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2;ENST00000360222.8_1_19:14854584-14867061:-|nuORF	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.286085	1076.55762	-0.65751	-0.00035459	-1.6973	-0.00091532	-2.3548	-0.0012699	539.2843801934544	101.83	0.98954	101.65	101.47	102.46	-0.17179	-0.015983	0.00019811	NaN	29.15	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69738			79851	4248	55724	55817							0.022401515111141634
TLVAFLAIVP	10	Unmodified	_TLVAFLAIVP_					0	0	0			REV__ENSG00000185344|ENST00000330342|ATP6V0A2;REV__ENST00000543687.1_1_12:124241315-124242576:+|nuORF	REV__ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7960815429688	2	522.328611	1042.64267	-0.40934	-0.00021381	-4.3233	-0.0022582	-4.7327	-0.002472	522.3262958499456	39.187	0.17894	38.964	38.857	39.035	-0.22311					6	4	2	0	0	0	0.03519	1	3295	3295		29.15	1.2673	1	59589	+		79852	27757;34805	55725	55818	88215	88215					0.12305265039231017
TLVARASTFEG	11	Unmodified	_TLVARASTFEG_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.3048706054688	2	576.306395	1150.59824	0.36193	0.00020858	-3.9204	-0.0022594	-3.5585	-0.0020508	576.3039991751956	95.887	1.1938	95.764	95.29	96.484	-0.12305					52	27	4	0	0	0	1.0017	1	11869	11869		36.447	4.4919	1	777150	+		79853	36815	55726	55819	88216	88216					0.02896209155096585
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.299072265625	2	546.308406	1090.60226	-1.0374	-0.00056674	0.60016	0.00032787	-0.43725	-0.00023887	546.3086635385422	80.742	1.4545	80.742	80.415	81.869	0					115	35	5	0	0	0	0.077175	6	10020	10020;10024;10035;10047;10060;10072		118.74	46.707	1	6295800			79854	3659	55727	55820	88217;88218;88219;88220;88221;88222	88217					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.306884765625	2	546.308406	1090.60226	-1.4772	-0.00080701	0.99612	0.00054419	-0.48109	-0.00026282	546.3088718998797	80.889	1.6581	80.737	80.385	82.043	-0.15168					114	40	4	0	0	0	0.03201	5	10042	10007;10018;10030;10042;10054		139.97	60.519	1	6510100			79855	3659	55727	55820	88223;88224;88225;88226;88227	88226					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.296142578125	2	546.308406	1090.60226	-1.6444	-0.00089838	1.1247	0.00061443	-0.51976	-0.00028395	546.3089363167138	80.69	1.8733	80.714	80.148	82.022	0.023911					119	45	4	0	0	0	0.025498	5	9938	9938;9942;9954;9966;9978		145.16	65.705	1	6800000			79856	3659	55727	55820	88228;88229;88230;88231;88232	88228					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.3073120117188	2	546.308406	1090.60226	-0.13179	-7.1999E-05	-0.068027	-3.7164E-05	-0.19982	-0.00010916	546.3083161075816	80.721	1.3498	80.483	80.206	81.555	-0.23784					75	32	3	0	0	0	0.077175	1	9681	9681		118.74	31.047	1	1301900			79857	3659	55727	55820	88233	88233					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.3062133789062	2	546.308406	1090.60226	0.14406	7.8703E-05	-0.39396	-0.00021522	-0.24989	-0.00013652	546.3080752770271	80.708	1.0258	80.502	80.215	81.241	-0.20633					77	24	4	0	0	0	0.22902	3	9685	9685;9697;9709		85.161	20.643	1	1175400			79858	3659	55727	55820	88234;88235;88236	88234					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.307373046875	2	546.308406	1090.60226	-0.54598	-0.00029827	0.35576	0.00019436	-0.19021	-0.00010391	546.3084993438619	80.671	1.4085	80.525	80.158	81.566	-0.146					81	33	4	0	0	0	0.071379	2	9668	9656;9668		120.87	44.699	1	1132900			79859	3659	55727	55820	88237;88238	88238					0.06058298648804339
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7998657226562	2	527.800217	1053.58588	-1.3556	-0.00071546	1.2295	0.00064893	-0.12605	-6.6529E-05	527.8007221798696	83.666	1.441	83.666	83.393	84.834	0					90	33	4	0	0	0	0.074956	3	10480	10466;10480;10492		119.56	64.053	1	1705600			79860	3048	55728	55821	88239;88240;88241	88240					0.06123217482695509
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.7999267578125	2	527.800217	1053.58588	-0.90425	-0.00047726	0.86815	0.00045821	-0.036101	-1.9054E-05	527.8005060718473	83.708	1.1928	83.617	83.257	84.45	-0.090454					79	27	4	0	0	0	0.08613	3	10438	10438;10452;10469		115.46	46.672	1	1910700			79861	3048	55728	55821	88242;88243;88244	88242					0.06123217482695509
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	527.7996215820312	2	527.800217	1053.58588	-0.65391	-0.00034513	0.57547	0.00030373	-0.078438	-4.14E-05	527.8003552134674	83.622	1.5315	83.649	83.257	84.789	0.026558					91	35	4	0	0	0	0.074956	4	10380	10380;10392;10405;10417		119.56	44.534	1	1618600			79862	3048	55728	55821	88245;88246;88247;88248	88245					0.06123217482695509
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.800048828125	2	527.800217	1053.58588	0.4597	0.00024263	-0.53536	-0.00028256	-0.075665	-3.9936E-05	527.7998006303599	83.542	1.4445	83.33	83.049	84.493	-0.21159					86	33	4	0	0	0	0.028181	5	10075	10067;10075;10088;10101;10113		143.02	54.886	1	2505700			79863	3048	55728	55821	88249;88250;88251;88252;88253	88250					0.06123217482695509
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.7999877929688	2	527.800217	1053.58588	0.27439	0.00014482	-0.38466	-0.00020302	-0.11027	-5.82E-05	527.7998438335604	83.518	1.2777	83.349	83.033	84.311	-0.16915					72	29	3	0	0	0	0.021668	3	10085	10085;10097;10109		148.21	59.563	1	2225000			79864	3048	55728	55821	88254;88255;88256	88254					0.06123217482695509
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.7999877929688	2	527.800217	1053.58588	0.20523	0.00010832	-0.32882	-0.00017355	-0.12359	-6.5231E-05	527.7998655911107	83.529	1.2846	83.39	83.037	84.322	-0.1386					81	29	4	0	0	0	0.049585	3	10063	10063;10076;10088		128.86	34.855	1	2128200			79865	3048	55728	55821	88257;88258;88259	88257					0.06123217482695509
TLVDLSTFD	9	Unmodified	_TLVDLSTFD_					0	0	0			REV__ENSG00000254986|ENST00000531863|DPP3	REV__ENSG00000254986|ENST00000531863|DPP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.7579345703125	2	505.755672	1009.49679	-0.23813	-0.00012044	3.8983	0.0019716	3.6601	0.0018511	505.75737874073053	100.79	2.0911	100.8	100.58	102.67	0.0090256					62	48	2	0	0	0	0.59099	1	12862	12862		53.351	7.3995	1	231580	+		79866	29059	55729	55822	88260	88260					-0.007576622674719147
TLVDNTINL	9	Unmodified	_TLVDNTINL_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.77728271484375	2	501.776939	1001.53933	0.49633	0.00024905	0.3764	0.00018887	0.87273	0.00043791	501.7769277984687	71.646	0.41749	71.646	71.339	71.756	0					23	10	3	0	0	0	0.030064	1	8687	8687		141.52	42.891	1	2105800			79867	18157;37870	55730	55823	88261	88261					0.038617328607642776
TLVDNTINL	9	Unmodified	_TLVDNTINL_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7771911621094	2	501.776939	1001.53933	0.34872	0.00017498	0.59986	0.00030099	0.94858	0.00047597	501.7768597089253	71.75	0.52461	71.76	71.278	71.802	0.0097733					27	13	4	0	0	0	0.22902	1	8616	8616		85.161	5.4482	1	2318000			79868	18157;37870	55730	55823	88262	88262					0.038617328607642776
TLVDNTINL	9	Unmodified	_TLVDNTINL_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.776939	1001.53933	0.21564	0.00010821	0.095441	4.789E-05	0.31109	0.0001561	501.77691701299847	72.018	0.47626	71.743	71.433	71.91	-0.2751	0.014714	-0.00030293	NaN	141.52	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343120			79869	18157;37870	55730	55823							0.038617328607642776
TLVDNTINL	9	Unmodified	_TLVDNTINL_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX;SETX-EIF3B|1|fusion	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.776939	1001.53933	0.22642	0.00011361	0.1601	8.0336E-05	0.38652	0.00019395	501.7766434526258	72.031	0.40121	71.77	71.441	71.843	-0.26199	0.041668	-0.00023803	NaN	141.52	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415140			79870	18157;37870	55730	55823							0.038617328607642776
TLVDVVVQS	9	Unmodified	_TLVDVVVQS_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.2922668457031	2	480.274032	958.533512	-0.056731	-2.7246E-05	2.3417	0.0011246	2.2849	0.0010974	480.2755211347321	56.096	0.43335	55.94	55.704	56.138	-0.15601					14	11	2	0	0	0	0.024436	1	6172	6172		16.473	0	1	150230			79871	1941	55731	55824	88263	88263					0.05258634349104341
TLVEDFFVMK	10	Unmodified	_TLVEDFFVMK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	614.7953491210938	2	614.81775	1227.62095	-1.4334	-0.0008813	2.1468	0.0013199	0.71338	0.0004386	614.8190744321544	54.39	0.2118	54.254	54.151	54.363	-0.13617					9	5	2	0	0	0	0.03519	1	5780	5780		35.618	0	1	127520			79872	3776	55732	55825	88264	88264					0.01624092228325935
TLVEDFFVMK	10	Unmodified	_TLVEDFFVMK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	614.81775	1227.62095	0.41744	0.00025665	1.5539	0.00095534	1.9713	0.001212	614.8182495459704	54.476	0.23512	54.269	54.122	54.358	-0.20613	0.0079225	-0.00026535	NaN	35.618	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81924			79873	3776	55732	55825							0.01624092228325935
TLVELIRSRPP	11	Unmodified	_TLVELIRSRPP_					0	0	0			REV__ENST00000536234.1_1_11:63992965-63993695:-|nuORF	REV__ENST00000536234.1_1_11:63992965-63993695:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	640.8901977539062	2	640.887887	1279.76122	-0.53873	-0.00034527	3.718	0.0023828	3.1793	0.0020376	640.8901198399866	80.121	1.3076	80.142	79.897	81.205	0.021439					86	31	4	0	0	0	1.0344	1	9877	9877		29.17	1.0886	1	1008600	+		79874	34685	55733	55826	88265	88265					0.13253012276936715
TLVESLLTI	9	Unmodified	_TLVESLLTI_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3;ENST00000470238.1_1_1:169838129-169857981:-|nuORF	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.80010986328125	2	494.799883	987.585213	-0.24504	-0.00012124	-0.34056	-0.00016851	-0.5856	-0.00028975	494.79981984263657	94.95	0.51794	94.798	94.537	95.055	-0.15186					18	11	2	0	0	0	0.62163	1	11704	11704		51.335	1.8939	1	101050			79875	713	55734	55827	88266	88266					0.09092378042998916
TLVESLLTI	9	Unmodified	_TLVESLLTI_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3;ENST00000470238.1_1_1:169838129-169857981:-|nuORF	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.799883	987.585213	0.19871	9.8319E-05	-0.57701	-0.0002855	-0.3783	-0.00018718	494.79959906451126	94.973	0.68983	94.973	94.702	95.392	0	0.057215	-5.8056E-05	NaN	51.335	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224210			79876	713	55734	55827							0.09092378042998916
TLVESLLTI	9	Unmodified	_TLVESLLTI_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3;ENST00000470238.1_1_1:169838129-169857981:-|nuORF	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.799883	987.585213	0.084833	4.1975E-05	-0.34776	-0.00017207	-0.26293	-0.0001301	494.79964659782496	94.94	0.69682	94.943	94.607	95.304	0.0033798	0.027558	0.0001688	NaN	51.335	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223340			79877	713	55734	55827							0.09092378042998916
TLVESLLTI	9	Unmodified	_TLVESLLTI_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3;ENST00000470238.1_1_1:169838129-169857981:-|nuORF	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	494.799883	987.585213	0.063662	3.15E-05	-0.50569	-0.00025021	-0.44203	-0.00021871	494.7997050800572	95.027	0.60799	95.031	94.704	95.312	0.0041199	0.11486	1.2521E-05	NaN	51.335	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242350			79878	713	55734	55827							0.09092378042998916
TLVESLLTI	9	Unmodified	_TLVESLLTI_					0	0	0		nc|ENSG00000000457|Q8IZE3|SCYL3;ENSG00000000457|ENST00000367771|SCYL3;ENST00000470238.1_1_1:169838129-169857981:-|nuORF	nc|ENSG00000000457|Q8IZE3|SCYL3	nc|ENSG00000000457|Q8IZE3|SCYL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.799883	987.585213	0.52764	0.00026108	-3.7691	-0.001865	-3.2415	-0.0016039	494.7994449182195	94.957	0.47485	94.834	94.51	94.985	-0.12251	-0.081675	-0.003217	NaN	51.335	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105150			79879	713	55734	55827							0.09092378042998916
TLVEVQINLI	10	Unmodified	_TLVEVQINLI_					0	0	0			REV__ENST00000437359.1_1_Y:23479554-23480244:+|nuORF	REV__ENST00000437359.1_1_Y:23479554-23480244:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2874145507812	2	571.344989	1140.67542	0.26961	0.00015404	4.1696	0.0023823	4.4392	0.0025363	571.8479546108202	52.803	0.27693	52.544	52.326	52.603	-0.25838					8	6	2	0	0	0	0.03519	1	5499	5499		19.997	0	1	101460	+		79880	32477	55735	55828	88267	88267					0.11071427371439313
TLVEVQVDP	9	Unmodified	_TLVEVQVDP_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7684631347656	2	500.27149	998.528426	-0.37618	-0.00018819	-4.0502	-0.0020262	-4.4264	-0.0022144	500.7700404947614	39.334	1.6824	39.108	38.736	40.419	-0.2257					126	44	6	0	0	0	0.62163	1	3275	3275		51.335	0	1	27495000	+		79881	24691	55736	55829	88268	88268					0.02910330486474777
TLVFRLEIA	9	Unmodified	_TLVFRLEIA_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.2947998046875	2	531.321317	1060.62808	0.12216	6.4904E-05	-0.58014	-0.00030824	-0.45799	-0.00024334	531.3209677384834	95.414	0.8624	95.418	94.922	95.784	0.0041199					30	19	2	0	0	0	0.0242	1	12122	12122		69.628	5.4204	1	178340	+		79882	26510	55737	55830	88269	88269					0.10019192891104467
TLVFRLEIA	9	Unmodified	_TLVFRLEIA_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.321317	1060.62808	-0.75062	-0.00039882	0.029477	1.5662E-05	-0.72114	-0.00038316	531.3215571697624	95.422	0.64189	95.422	95.136	95.778	0	0.040466	0.000422	NaN	69.628	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176600	+		79883	26510	55737	55830							0.10019192891104467
TLVFRLEIA	9	Unmodified	_TLVFRLEIA_					0	0	0			REV__nc|ENSG00000170820|P23945-2|FSHR	REV__nc|ENSG00000170820|P23945-2|FSHR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.321317	1060.62808	-0.10702	-5.6861E-05	-0.39147	-0.00020799	-0.49848	-0.00026486	531.320958890314	95.3	0.68531	95.303	95.001	95.686	0.0033722	-0.077734	-2.5311E-05	NaN	69.628	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165890	+		79884	26510	55737	55830							0.10019192891104467
TLVGGSGLGAW	11	Unmodified	_TLVGGSGLGAW_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.27166748046875	2	509.271824	1016.5291	0.40225	0.00020485	-0.06894	-3.5109E-05	0.33331	0.00016975	509.27141053526	80.059	1.2899	79.812	79.07	80.36	-0.2465					67	30	4	0	0	0	0.782	1	9581	9581		58.782	0.55203	1	449320			79885	16479	55738	55831	88270	88270					0.021491699262014663
TLVGLFKGAAL	11	Unmodified	_TLVGLFKGAAL_					0	0	0			REV__ENST00000554741.5_1_14:23290626-23292577:-|nuORF	REV__ENST00000554741.5_1_14:23290626-23292577:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.316650390625	2	545.336967	1088.65938	-0.84814	-0.00046252	-2.2335	-0.001218	-3.0817	-0.0016806	545.3356225757399	89.277	0.70589	89.114	88.68	89.386	-0.1626					32	16	3	0	0	0	0.024771	1	10933	10933		35.152	1.2304	1	227180	+		79886	34997	55739	55832	88271	88271					0.11859765925169086
TLVGSHAVSSL	11	Unmodified	_TLVGSHAVSSL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.7962036132812	2	535.795663	1069.57677	-1.0683	-0.0005724	3.6191	0.0019391	2.5508	0.0013667	535.7974282861126	92.155	1.3684	92.155	91.641	93.009	0					96	32	4	0	0	0	0.84811	1	11705	11705		54.776	5.2403	1	2271900			79887	3413	55740	55833	88272	88272					0.04476824126390966
TLVGSHAVSSL	11	Unmodified	_TLVGSHAVSSL_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.2631225585938	2	535.795663	1069.57677	-0.81313	-0.00043567	3.6032	0.0019306	2.79	0.0014949	535.7973521693403	92.15	1.4446	92.142	91.752	93.196	-0.0082932					102	34	4	0	0	0	0.024756	1	11617	11617		29.17	0	1	2387200			79888	3413	55740	55833	88273	88273					0.04476824126390966
TLVIAWPTF	9	Unmodified	_TLVIAWPTF_					0	0	0		ENST00000588483.1_3_19:16191762-16191909:+|nuORF	ENST00000588483.1_3_19:16191762-16191909:+|nuORF	ENST00000588483.1_3_19:16191762-16191909:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.238037109375	2	524.29731	1046.58007	-0.75977	-0.00039835	-3.4858	-0.0018276	-4.2456	-0.0022259	524.2952170995933	44.629	0.75461	44.385	44.08	44.835	-0.2444					42	19	3	0	0	0	0.024436	1	4164	4164		23.042	2.0956	1	1329200			79889	17289	55741	55834	88274	88274					0.05864118971044263
TLVIIGCVLS	10	Unmodified	_TLVIIGCVLS_					0	0	0			REV__ENSG00000164073|ENST00000641686|MFSD8	REV__ENSG00000164073|ENST00000641686|MFSD8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7816467285156	2	509.304278	1016.594	-1.1576	-0.00058958	-1.2703	-0.00064695	-2.4279	-0.0012365	509.80648412327133	44.155	0.25104	44.01	43.848	44.099	-0.14471					10	6	2	0	0	0	0.03519	1	4149	4149		14.865	3.3539	1	94657	+		79890	25685	55742	55835	88275	88275					0.08637028407838443
TLVKAEAEL	9	Unmodified	_TLVKAEAEL_					0	0	0			REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2806701660156	2	487.281857	972.549162	-0.58347	-0.00028431	0.69067	0.00033655	0.1072	5.2235E-05	487.2819835610659	70.207	0.78154	70.219	70.032	70.813	0.012421					44	20	3	0	0	0	0.03849	1	8417	8417		134.81	0.99809	1	2966200	+		79891	27076	55743	55836	88276	88276					0.061789208661252815
TLVKIRMM	8	Unmodified	_TLVKIRMM_					0	0	0			REV__ENST00000374472.4_1_1:24200476-24200659:-|nuORF	REV__ENST00000374472.4_1_1:24200476-24200659:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.3104553222656	2	496.293191	990.571828	-0.20994	-0.00010419	2.9253	0.0014518	2.7154	0.0013476	496.2946491421128	74.713	1.1822	74.723	74.181	75.363	0.010376					65	28	3	0	0	0	0.027866	1	9111	9111		20.482	1.1219	1	216880	+		79892	31295	55744	55837	88277	88277					0.07616525458411161
TLVKRLKKLHL	11	Unmodified	_TLVKRLKKLHL_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2689514160156	3	450.309885	1347.90782	-0.68118	-0.00030674	-4.0735	-0.0018343	-4.7546	-0.0021411	450.3079152478376	43.906	0.99086	43.906	43.224	44.215	0					63	27	3	0	0	0	0.024723	1	4129	4129		35.178	28.16	1	315540			79893	6618	55745	55838	88278	88278					0.24778734232700117
TLVKRLKKLHL	11	Unmodified	_TLVKRLKKLHL_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2;UBN2|p.E553Afs*4|1|0.09|ENSG00000157741|chr7:139272383-139272384|AA/-|frameshift_variant;UBN2|p.N582Mfs*16|1|0.11|ENSG00000157741|chr7:139273320-139273320|A/-|frameshift_variant	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2692565917969	3	450.309885	1347.90782	-0.8054	-0.00036268	-3.775	-0.0016999	-4.5804	-0.0020626	450.64253255334233	44.174	0.8098	44.03	43.353	44.162	-0.14471					50	22	3	0	0	0	0.024809	1	4114	4114		28.577	23.164	1	314600			79894	6618	55745	55838	88279	88279					0.24778734232700117
TLVLCSLVE	9	Unmodified	_TLVLCSLVE_					0	0	0		ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.758056640625	2	488.772811	975.531069	-0.42942	-0.00020989	1.1761	0.00057487	0.74673	0.00036498	488.77351900607977	43.08	0.43693	43.08	42.859	43.296	0					20	11	2	0	0	0	0.024457	1	4034	4034		21.96	0	1	404480			79895	10748	55746	55839	88280	88280					0.04232462619779653
TLVLEDHTA	9	Unmodified	_TLVLEDHTA_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.319091796875	2	499.761289	997.508025	-0.095493	-4.7724E-05	-0.17253	-8.6223E-05	-0.26802	-0.00013395	499.7611224250395	42.391	0.7196	42.268	41.924	42.643	-0.12299					38	18	3	0	0	0	0.024506	1	3818	3818		30.504	5.0535	1	577970			79896	10266	55747	55840	88281	88281					0.0091715982664482
TLVLYPAAR	9	Unmodified	_TLVLYPAAR_					0	0	0			REV__ENST00000474947.1_1_7:100238307-100240397:-|nuORF	REV__ENST00000474947.1_1_7:100238307-100240397:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2864685058594	2	502.300384	1002.58622	0.75289	0.00037818	-0.95877	-0.00048159	-0.20587	-0.00010341	502.29956386611815	70.967	0.61566	70.967	70.569	71.185	0					21	14	2	0	0	0	0.024405	1	8598	8598		20.947	9.4359	1	593400	+		79897	21609	55748	55841	88282	88282					0.08502637202559526
TLVPGVIGLW	10	Unmodified	_TLVPGVIGLW_					0	0	0			REV__ENSG00000123415|ENST00000682136|SMUG1	REV__ENSG00000123415|ENST00000682136|SMUG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3460693359375	2	527.81841	1053.62227	-1.129	-0.00059592	-4.3263	-0.0022835	-5.4553	-0.0028794	528.3157634758744	84.229	0.93974	84.156	83.528	84.468	-0.072769					29	21	2	0	0	0	0.03519	1	10495	10495		30.504	14.03	1	89929	+		79898	22695	55749	55842	88283	88283					0.09760094379407747
TLVRRRAPM	9	Unmodified	_TLVRRRAPM_					0	0	0			REV__ENSG00000129749|ENST00000250699|CHRNA10	REV__ENSG00000129749|ENST00000250699|CHRNA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.325439453125	2	550.329485	1098.64442	0.081598	4.4906E-05	-3.9678	-0.0021836	-3.8862	-0.0021387	550.3276499365805	98.961	0.92738	98.957	98.596	99.523	-0.0038834					49	20	3	0	0	0	0.83071	1	12559	12559		37.159	2.0071	1	255790	+		79899	23063	55750	55843	88284	88284					0.09903995576178204
TLVSRLPIF	9	Unmodified	_TLVSRLPIF_					0	0	0		CCSER1|p.F119Lfs*9|1|0.2|ENSG00000184305|chr4:90308638-90308638|T/-|frameshift_variant;nc|ENSG00000184305|Q9C0I3-2|CCSER1;ENSG00000184305|ENST00000509176|CCSER1	CCSER1|p.F119Lfs*9|1|0.2|ENSG00000184305|chr4:90308638-90308638|T/-|frameshift_variant	CCSER1|p.F119Lfs*9|1|0.2|ENSG00000184305|chr4:90308638-90308638|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3101196289062	2	523.32386	1044.63317	-1.6032	-0.00083898	-1.1611	-0.00060766	-2.7643	-0.0014466	523.3227196611222	60.565	0.18298	60.565	60.473	60.656	0					6	4	2	0	0	0	0.024535	1	6959	6959		12.207	0	1	60217			79900	230	55751	55844	88285	88285					0.1126349675369056
TLVTSSIN	8	Unmodified	_TLVTSSIN_					0	0	0		ENST00000261015.4_1_2:203772599-203772641:-|nuORF	ENST00000261015.4_1_2:203772599-203772641:-|nuORF	ENST00000261015.4_1_2:203772599-203772641:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.9032897949219	2	417.732	833.449448	-0.16474	-6.8816E-05	3.9839	0.0016642	3.8192	0.0015954	417.7329165369843	31.806	0.53569	31.648	31.412	31.948	-0.15772					27	12	3	0	0	0	0.027866	1	2133	2133		29.15	0	1	150800			79901	11457	55752	55845	88286	88286					0.0260610325219659
TLVVVPRS	8	Unmodified	_TLVVVPRS_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.28741455078125	2	435.774003	869.533452	-0.6576	-0.00028657	1.4758	0.00064312	0.8182	0.00035655	435.7746072075888	26.192	0.46969	25.956	25.762	26.232	-0.23603					21	13	2	0	0	0	0.027866	1	1312	1312		18.324	5.3652	1	400760			79902	18537	55753	55846	88287	88287					0.09346679139764547
TLVWKKAIL	9	Unmodified	_TLVWKKAIL_					0	0	0			REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	REV__nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.7982788085938	2	536.349877	1070.6852	-0.25949	-0.00013918	0.23288	0.0001249	-0.026614	-1.4274E-05	536.3498599857834	88.986	2.943	88.986	87.651	90.594	0					145	70	3	0	0	0	0.024205	1	11238	11238		63.306	11.971	1	1357100	+		79903	24392	55754	55847	88288	88288					0.15268660167453163
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7875061035156	2	493.78711	985.559667	0.3469	0.0001713	-0.9318	-0.00046011	-0.5849	-0.00028882	493.786659530051	57.975	0.44582	57.975	57.68	58.126	0					29	11	3	0	0	0	0.026982	4	6541	6520;6531;6541;6561		143.97	56.278	1	21058000			79904	9787	55755	55848	88289;88290;88291;88292	88291					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7873840332031	2	493.78711	985.559667	-0.60957	-0.000301	-3.6417	-0.0017982	-4.2513	-0.0020992	493.7837798251549	58.236	1.518	58.061	57.788	59.306	-0.1749					61	41	3	0	0	0	0.049708	5	6550	6529;6538;6550;6563;6576		128.82	56.938	1	19482000			79905	9787	55755	55848	88293;88294;88295;88296;88297	88295					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	OPSCC_39_ClassI_Rep-3	3	493.78790283203125	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.744	1	57.839	57.339	58.339	0.095306								0	0	0	0.037273	1	6430	6430		114.59	39.543	1				79906	9787	55755	55848	88298	88298					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	OPSCC_39_ClassI_Rep-3	3	493.7872314453125	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.808	1	57.902	57.402	58.402	0.094219								0	0	0	0.037273	1	6440	6440		114.59	26.832	1				79907	9787	55755	55848	88299	88299					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	OPSCC_39_ClassI_Rep-3	3	493.787109375	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.881	1	57.972	57.472	58.472	0.091217								0	0	0	0.021408	1	6452	6452		128.82	32.625	1				79908	9787	55755	55848	88300	88300					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	OPSCC_39_ClassI_Rep-3	3	493.787109375	2	493.78711	985.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.956	1	58.047	57.547	58.547	0.091217								0	0	0	0.067765	1	6465	6465		101.21	29.916	1				79909	9787	55755	55848	88301	88301					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7865905761719	2	493.78711	985.559667	0.26775	0.00013221	-0.052579	-2.5963E-05	0.21517	0.00010625	493.7870354544525	58.222	0.40195	57.989	57.822	58.224	-0.23363					15	9	2	0	0	0	0.36105	1	6386	6386		68.485	10.255	1	1432100			79910	9787	55755	55848	88302	88302					0.06630948311237717
TLVYHVVGV	9	Unmodified	_TLVYHVVGV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.78711	985.559667	-0.47903	-0.00023654	0.33947	0.00016763	-0.13956	-6.8911E-05	493.7871068958814	58.189	0.32007	58.012	57.826	58.147	-0.17776	-0.0057777	0.0011053	NaN	143.97	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011900			79911	9787	55755	55848							0.06630948311237717
TLVYIHPVE	9	Unmodified	_TLVYIHPVE_					0	0	0		ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	ENSG00000170325|ENST00000360871|PRDM10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.7960815429688	2	535.797675	1069.5808	-0.30484	-0.00016333	-0.75284	-0.00040337	-1.0577	-0.0005667	535.7970589564059	92.162	1.2672	92.171	91.832	93.099	0.0094147					82	30	4	0	0	0	0.70186	1	11648	11648		45.952	1.8352	1	2546600			79912	8025	55756	55849	88303	88303					0.04878913620086678
TLVYVFNAK	9	Unmodified	_TLVYVFNAK_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.7997436523438	2	527.800217	1053.58588	-1.3556	-0.00071546	1.2295	0.00064893	-0.12605	-6.6529E-05	527.8007221798696	83.666	1.441	83.666	83.393	84.834	0					90	33	4	0	0	0	0.20967	1	10504	10504		87.754	5.4493	1	1705600			79913	624	55757	55850	88304	88304					0.06123217482695509
TLWEELTQN	9	Unmodified	_TLWEELTQN_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.33056640625	2	567.277303	1132.54005	-0.51403	-0.0002916	-2.1007	-0.0011917	-2.6148	-0.0014833	567.7770526443223	93.445	1.0183	93.445	92.751	93.77	0					31	23	2	0	0	0	0.024511	1	11784	11784		32.812	12.816	1	83965	+		79914	22204	55758	55851	88305	88305					-0.020914724902013404
TLWEELTQN	9	Unmodified	_TLWEELTQN_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	567.277303	1132.54005	-1.2322	-0.00069901	-0.89644	-0.00050853	-2.1287	-0.0012075	567.7775047959263	93.565	0.86292	93.572	93.308	94.171	0.0064621	-0.0047021	0.00081417	NaN	19.104	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73907	+		79915	22204	55758	55851							-0.020914724902013404
TLWLGCFMNR	10	Unmodified	_TLWLGCFMNR_					0	0	0			REV__ENST00000511685.5_2_4:183603156-183609376:+|nuORF	REV__ENST00000511685.5_2_4:183603156-183609376:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.26910400390625	3	414.2037	1239.58927	-0.083136	-3.4435E-05	-0.43621	-0.00018068	-0.51934	-0.00021511	414.2028225243762	28.369	0.34001	28.365	28.242	28.582	-0.0042019					9	7	2	0	0	0	0.03519	1	1639	1639		40.058	19.221	1	19234	+		79916	34124	55759	55852	88306	88306					-0.020941790065990062
TLWLGLTLG	9	Unmodified	_TLWLGLTLG_					0	0	0			REV__ENSG00000104783|ENST00000648319|KCNN4	REV__ENSG00000104783|ENST00000648319|KCNN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.28741455078125	2	487.289485	972.564418	-0.38675	-0.00018846	-4.2291	-0.0020608	-4.6159	-0.0022493	487.28742060475133	28.998	1.3239	28.825	28.464	29.788	-0.17229					52	30	3	0	0	0	0.43973	1	1757	1757		63.306	4.5243	1	4981500	+		79917	21463	55760	55853	88307	88307					0.0770383245398989
TLWNQELYI	9	Unmodified	_TLWNQELYI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.3057861328125	2	590.305864	1178.59717	-1.0506	-0.00062016	1.3564	0.00080072	0.30588	0.00018056	590.3065736543642	87.516	1.2757	87.516	87.194	88.47	0					88	30	4	0	0	0	0.013924	3	11015	11003;11015;11027		167.23	76.452	1	2328000			79918	1383	55761	55854	88308;88309;88310	88309					0.015019947861901528
TLWNQELYI	9	Unmodified	_TLWNQELYI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	590.3054809570312	2	590.305864	1178.59717	-0.56691	-0.00033465	0.71049	0.00041941	0.14358	8.4757E-05	590.3062121090798	87.464	1.273	87.428	87.152	88.425	-0.035355					87	30	5	0	0	0	0.048057	2	10979	10967;10979		129.42	57.544	1	2390500			79919	1383	55761	55854	88311;88312	88312					0.015019947861901528
TLWNQELYI	9	Unmodified	_TLWNQELYI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	590.3056030273438	2	590.305864	1178.59717	1.3728	0.00081039	-1.0868	-0.00064156	0.286	0.00016883	590.3051260245891	87.558	1.279	87.58	87.22	88.499	0.021255					89	30	4	0	0	0	0.016758	2	10933	10933;10944		153.04	51.435	1	2093000			79920	1383	55761	55854	88313;88314	88313					0.015019947861901528
TLWNQELYI	9	Unmodified	_TLWNQELYI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.3057250976562	2	590.305864	1178.59717	-0.65114	-0.00038437	0.84743	0.00050024	0.19629	0.00011587	590.3062969297715	87.498	0.74263	87.319	87.028	87.771	-0.17874					62	17	5	0	0	0	0.03666	3	10654	10630;10642;10654		136.27	56.817	1	1440200			79921	1383	55761	55854	88315;88316;88317	88317					0.015019947861901528
TLWNQELYI	9	Unmodified	_TLWNQELYI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.3053588867188	2	590.305864	1178.59717	-0.32309	-0.00019072	0.25657	0.00015145	-0.066518	-3.9266E-05	590.3059365580992	87.471	0.79175	87.335	86.968	87.76	-0.13613					58	18	4	0	0	0	0.043667	3	10649	10637;10649;10662		131.03	44.625	1	1474800			79922	1383	55761	55854	88318;88319;88320	88319					0.015019947861901528
TLWNQELYI	9	Unmodified	_TLWNQELYI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.3056640625	2	590.305864	1178.59717	-0.59982	-0.00035408	0.75662	0.00044664	0.15681	9.2564E-05	590.3062405281889	87.474	0.87307	87.337	86.911	87.784	-0.13734					66	20	5	0	0	0	0.016542	3	10634	10622;10634;10646		154.12	55.489	1	1390900			79923	1383	55761	55854	88321;88322;88323	88322					0.015019947861901528
TLWPPTQS	8	Unmodified	_TLWPPTQS_					0	0	0		ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2668762207031	2	465.239993	928.465432	-0.078812	-3.6667E-05	3.2221	0.0014991	3.1433	0.0014624	465.2413822615057	43.114	0.50983	42.974	42.737	43.247	-0.13929					21	13	2	0	0	0	0.027866	1	3971	3971		24.203	0	1	270570			79924	15814	55762	55855	88324	88324					-0.0016619051090174253
TLWQALLL	8	Unmodified	_TLWQALLL_					0	0	0			REV__ENST00000545087.1_1:2143528-2143765:-|nuORF	REV__ENST00000545087.1_1:2143528-2143765:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.29229736328125	2	479.292028	956.569503	0.97525	0.00046743	1.4706	0.00070486	2.4459	0.0011723	479.2927133519521	55.744	0.42536	55.744	55.645	56.07	0					15	11	2	0	0	0	0.027866	1	6184	6184		26.796	13.021	1	393880	+		79925	34817	55763	55856	88325	88325					0.08948136316621458
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.2793579101562	2	561.279315	1120.54408	0.59079	0.0003316	-1.0324	-0.00057945	-0.44158	-0.00024785	561.2787533101794	84.979	2.9006	84.979	84.463	87.364	0					191	68	4	0	0	0	0.012965	15	10689	10619;10628;10640;10652;10664;10676;10689;10702;10714;10727;10737;10751;10776;10787;10800		214.25	136.93	1	29317000			79926	4719	55764	55857	88326;88327;88328;88329;88330;88331;88332;88333;88334;88335;88336;88337;88338;88339;88340	88332					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.2794189453125	2	561.279315	1120.54408	-0.72984	-0.00040964	0.27587	0.00015484	-0.45397	-0.0002548	561.2794888253019	84.935	2.6872	84.877	84.442	87.13	-0.05761					184	63	4	0	0	0	0.013995	13	10593	10583;10593;10605;10617;10629;10641;10654;10668;10681;10692;10704;10715;10753		214.25	126.49	1	27275000			79927	4719	55764	55857	88341;88342;88343;88344;88345;88346;88347;88348;88349;88350;88351;88352;88353	88342					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.279296875	2	561.279315	1120.54408	-0.68785	-0.00038608	0.10566	5.9307E-05	-0.58219	-0.00032677	561.2793882770294	84.906	2.8951	84.932	84.415	87.31	0.025528					226	68	4	0	0	0	0.012965	15	10613	10530;10540;10552;10564;10576;10588;10600;10613;10625;10638;10650;10662;10693;10706;10718		214.25	128.81	1	32952000			79928	4719	55764	55857	88354;88355;88356;88357;88358;88359;88360;88361;88362;88363;88364;88365;88366;88367;88368	88361					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.279052734375	2	561.279315	1120.54408	0.31766	0.0001783	-0.9558	-0.00053647	-0.63814	-0.00035817	561.2788277535475	84.998	3.887	84.794	84.377	88.264	-0.20329					273	92	4	0	0	0	0.013995	21	10267	10247;10255;10267;10279;10291;10303;10315;10328;10339;10353;10366;10376;10388;10402;10414;10425;10436;10449;10462;10473;10485		214.25	134.53	1	42722000			79929	4719	55764	55857	88369;88370;88371;88372;88373;88374;88375;88376;88377;88378;88379;88380;88381;88382;88383;88384;88385;88386;88387;88388;88389	88371					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.2794799804688	2	561.279315	1120.54408	0.77864	0.00043704	-1.4744	-0.00082757	-0.69578	-0.00039053	561.2785607602308	84.916	3.9697	84.758	84.321	88.291	-0.15869					302	94	5	0	0	0	0.012965	21	10275	10252;10263;10275;10287;10299;10311;10323;10335;10347;10361;10373;10386;10399;10411;10423;10434;10446;10458;10482;10495;10525		214.25	126.55	1	51030000			79930	4719	55764	55857	88390;88391;88392;88393;88394;88395;88396;88397;88398;88399;88400;88401;88402;88403;88404;88405;88406;88407;88408;88409;88410	88392					-0.011373829964895776
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.2793579101562	2	561.279315	1120.54408	0.31722	0.00017805	-1.0662	-0.00059842	-0.74895	-0.00042037	561.2787919356931	84.946	4.9507	84.808	84.281	89.231	-0.13752					301	117	4	0	0	0	0.010315	22	10284	10237;10248;10260;10272;10284;10296;10308;10321;10332;10344;10356;10369;10382;10394;10407;10419;10429;10441;10453;10465;10478;10491		231.86	144.16	1	46920000			79931	4719	55764	55857	88411;88412;88413;88414;88415;88416;88417;88418;88419;88420;88421;88422;88423;88424;88425;88426;88427;88428;88429;88430;88431;88432	88415					-0.011373829964895776
TLWYRPLD	8	Unmodified	_TLWYRPLD_					0	0	0		CDK5|p.P170L|1|0.31|ENSG00000164885|chr7:151055348-151055348|G/A|missense_variant;CDK15|p.P268L|1|0.38|ENSG00000138395|chr2:201835715-201835715|C/T|missense_variant	CDK5|p.P170L|1|0.31|ENSG00000164885|chr7:151055348-151055348|G/A|missense_variant	CDK5|p.P170L|1|0.31|ENSG00000164885|chr7:151055348-151055348|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.310791015625	2	532.282192	1062.54983	-0.85409	-0.00045462	1.1941	0.0006356	0.34001	0.00018098	532.2824710710479	35.506	0.20179	35.293	35.193	35.395	-0.21246					7	4	2	0	0	0	0.027866	1	2703	2703		15.642	0	1	47932			79932	242	55765	55858	88433	88433					0.02105760305835247
TLYALRIEL	9	Unmodified	_TLYALRIEL_					0	0	0		nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENSG00000137266|ENST00000406686|SLC22A23;nc|ENSG00000137266|A1A5C7-4|SLC22A23;SLC22A23|p.V419Rfs*50|1|0.64|ENSG00000137266|chr6:3289823-3289824|-/A|frameshift_variant	nc|ENSG00000137266|A1A5C7-2|SLC22A23	nc|ENSG00000137266|A1A5C7-2|SLC22A23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2864379882812	2	546.326599	1090.63865	-0.091907	-5.0211E-05	0.037629	2.0558E-05	-0.054278	-2.9653E-05	546.3266863867048	83.89	0.64709	83.751	83.547	84.194	-0.13834					22	14	2	0	0	0	0.023239	1	10173	10173		96.19	0	1	83699			79933	5108	55766	55859	88434	88434					0.09695175545516577
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.2999267578125	2	557.300581	1112.58661	0.22671	0.00012635	-1.2809	-0.00071385	-1.0542	-0.0005875	557.2996942658704	68.003	1.4123	68.003	67.719	69.131	0					84	36	4	0	0	0	0.247	2	8137	8137;8160		82.75	8.4954	1	3441700			79934	18480;38104	55767	55860	88435;88436	88435					0.03482012131780721
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.2993774414062	2	557.300581	1112.58661	-0.089119	-4.9666E-05	-0.58402	-0.00032547	-0.67313	-0.00037514	557.30012876976	68.366	1.044	68.073	67.781	68.825	-0.29267					71	26	4	0	0	0	0.40693	1	8151	8151		65.465	8.7443	1	3583600			79935	18480;38104	55767	55860	88437	88437					0.03482012131780721
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.2996826171875	2	557.300581	1112.58661	0.53121	0.00029605	-1.232	-0.00068658	-0.70075	-0.00039053	557.2997142401326	68.091	1.0178	68.11	67.781	68.799	0.018913					76	26	4	0	0	0	0.22902	1	8076	8076		85.161	10.906	1	3473000			79936	18480;38104	55767	55860	88438	88438					0.03482012131780721
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.300581	1112.58661	0.022078	1.2304E-05	0.43125	0.00024034	0.45333	0.00025264	557.3004389505247	68.326	0.65214	68.067	67.858	68.51	-0.25864	0.010426	0.0013996	NaN	85.161	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679380			79937	18480;38104	55767	55860							0.03482012131780721
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.300581	1112.58661	0.39241	0.00021869	-0.10032	-5.5908E-05	0.2921	0.00016279	557.3003413047871	68.276	0.76009	68.042	67.797	68.557	-0.23375	-0.014935	0.00080708	NaN	85.161	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627580			79938	18480;38104	55767	55860							0.03482012131780721
TLYDSRLFV	9	Unmodified	_TLYDSRLFV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9;TRAPPC9|p.G119R|1|0.43|ENSG00000167632|chr8:140451019-140451019|C/T|missense_variant	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.300581	1112.58661	0.26833	0.00014954	-0.65759	-0.00036648	-0.38927	-0.00021694	557.2999841123205	68.276	0.76502	68.046	67.715	68.48	-0.23048	-0.01117	0.00018595	NaN	85.161	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659690			79939	18480;38104	55767	55860							0.03482012131780721
TLYDSVYLTL	10	Unmodified	_TLYDSVYLTL_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	594.3102416992188	2	594.313354	1186.61216	-1.7121	-0.0010175	-2.807	-0.0016682	-4.519	-0.0026857	594.3115556139444	61.7	0.70609	61.7	61.374	62.08	0					59	18	4	0	0	0	0.88896	2	7144	7144;7168		54.776	13.35	1	3668100			79940	1209	55768	55861	88439;88440	88439					0.02631441863513828
TLYDSVYLTL	10	Unmodified	_TLYDSVYLTL_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	594.3107299804688	2	594.313354	1186.61216	-0.38791	-0.00023054	-4.2342	-0.0025164	-4.6221	-0.002747	594.3106853917436	61.609	0.70603	61.68	61.355	62.061	0.071129					58	18	4	0	0	0	0.77808	1	7062	7062		62.107	3.8775	1	3664700			79941	1209	55768	55861	88441	88441					0.02631441863513828
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.290283203125	2	540.290214	1078.56587	-0.60283	-0.0003257	-0.49542	-0.00026767	-1.0983	-0.00059337	540.2899885069559	53.388	2.9527	53.388	52.974	55.927	0					181	83	5	0	0	0	0.013719	11	5797	5737;5749;5761;5773;5785;5797;5809;5821;5833;5845;5867		168.26	80.562	1	74200000			79942	10190	55769	55862	88442;88443;88444;88445;88446;88447;88448;88449;88450;88451;88452	88447					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.2901611328125	2	540.290214	1078.56587	-1.3085	-0.00070698	0.12833	6.9333E-05	-1.1802	-0.00063765	540.2903286851758	53.439	2.9124	53.292	52.948	55.86	-0.14723					183	81	5	0	0	0	0.013337	11	5737	5726;5737;5749;5761;5773;5785;5797;5809;5821;5834;5867		176.44	91.529	1	81958000			79943	10190	55769	55862	88453;88454;88455;88456;88457;88458;88459;88460;88461;88462;88463	88454					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.28955078125	2	540.290214	1078.56587	-1.1139	-0.0006018	-0.032481	-1.7549E-05	-1.1463	-0.00061935	540.2902278527198	53.222	2.9878	53.318	52.792	55.78	0.095669					176	83	5	0	0	0	0.013946	10	5686	5639;5650;5662;5674;5686;5698;5710;5722;5735;5748		195.05	96.492	1	83022000			79944	10190	55769	55862	88464;88465;88466;88467;88468;88469;88470;88471;88472;88473	88468					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.2904663085938	2	540.290214	1078.56587	-0.62745	-0.00033901	0.1554	8.3963E-05	-0.47205	-0.00025504	540.2902480411419	53.393	1.2149	53.266	52.632	53.847	-0.12705					81	30	5	0	0	0	0.034407	3	5597	5574;5585;5597		138.06	63.807	1	11706000			79945	10190	55769	55862	88474;88475;88476	88476					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.2901611328125	2	540.290214	1078.56587	-0.3825	-0.00020666	-0.16088	-8.692E-05	-0.54338	-0.00029358	540.2900915846168	53.606	1.0747	53.359	52.814	53.889	-0.24733					85	30	5	0	0	0	0.034407	3	5608	5596;5608;5621		138.06	63.807	1	12712000			79946	10190	55769	55862	88477;88478;88479	88478					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.2900390625	2	540.290214	1078.56587	-1.0898	-0.0005888	0.33635	0.00018172	-0.75344	-0.00040707	540.290311332606	53.448	1.266	53.251	52.623	53.889	-0.19739					95	35	4	0	0	0	0.027736	3	5589	5577;5589;5602		143.37	66.599	1	11945000			79947	10190	55769	55862	88480;88481;88482	88481					0.029734217520854145
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.7670288085938	2	566.767103	1131.51965	-0.38757	-0.00021966	-0.10004	-5.6699E-05	-0.48761	-0.00027636	566.767033488706	40.746	2.4339	40.746	40.281	42.715	0					179	69	5	0	0	0	0.016758	6	3644	3595;3607;3619;3631;3644;3659		153.04	57.22	1	34597000			79948	2010	55770	55863	88483;88484;88485;88486;88487;88488	88487					-0.0408464315000856
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.7672119140625	2	566.767103	1131.51965	0.41792	0.00023686	-1.0581	-0.00059969	-0.64017	-0.00036283	566.7665172369585	40.899	2.3444	40.775	40.267	42.611	-0.12317					198	66	5	0	0	0	0.03849	6	3665	3601;3613;3625;3637;3650;3665		134.81	44.094	1	31072000			79949	2010	55770	55863	88489;88490;88491;88492;88493;88494	88494					-0.0408464315000856
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.7672729492188	2	566.767103	1131.51965	-1.0037	-0.00056886	0.46031	0.00026089	-0.54338	-0.00030797	566.7673496169194	40.929	2.5426	40.952	40.46	43.002	0.023006					202	72	5	0	0	0	0.016758	6	3617	3569;3580;3592;3605;3617;3632		153.04	56.845	1	33180000			79950	2010	55770	55863	88495;88496;88497;88498;88499;88500	88499					-0.0408464315000856
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.7672119140625	2	566.767103	1131.51965	-0.38915	-0.00022056	0.26911	0.00015253	-0.12003	-6.8031E-05	566.7671718057749	40.907	1.0267	40.771	40.488	41.515	-0.13553					70	26	4	0	0	0	0.043667	4	3574	3566;3574;3588;3602		131.03	31.178	1	3866900			79951	2010	55770	55863	88501;88502;88503;88504	88502					-0.0408464315000856
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.7670288085938	2	566.767103	1131.51965	-0.16462	-9.3299E-05	-0.0082158	-4.6565E-06	-0.17283	-9.7955E-05	566.7670086765057	41.112	1.0796	40.884	40.544	41.624	-0.2278					80	27	4	0	0	0	0.067814	2	3605	3592;3605		122.18	39.425	1	3447700			79952	2010	55770	55863	88505;88506	88506					-0.0408464315000856
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.7675170898438	2	566.767103	1131.51965	-0.86834	-0.00049215	0.71123	0.0004031	-0.15711	-8.9047E-05	566.7674216944098	41.173	1.1729	40.943	40.624	41.797	-0.23029					81	30	4	0	0	0	0.15366	2	3598	3589;3598		98.629	16.389	1	3809500			79953	2010	55770	55863	88507;88508	88508					-0.0408464315000856
TLYFLQGGL	9	Unmodified	_TLYFLQGGL_					0	0	0			REV__ENST00000374994.8_2_9:101911626-101911818:+|nuORF	REV__ENST00000374994.8_2_9:101911626-101911818:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.8085632324219	2	506.279118	1010.54368	0.12166	6.1595E-05	-4.2546	-0.002154	-4.133	-0.0020924	506.27677717528087	57.235	1.45	57.033	56.327	57.777	-0.20208					66	38	3	0	0	0	0.024294	1	6349	6349		29.15	8.6677	1	2725200	+		79954	31313	55771	55864	88509	88509					0.03883242074334703
TLYFLQGGL	9	Unmodified	_TLYFLQGGL_					0	0	0			REV__ENST00000374994.8_2_9:101911626-101911818:+|nuORF	REV__ENST00000374994.8_2_9:101911626-101911818:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.279118	1010.54368	-0.42652	-0.00021594	-3.5427	-0.0017936	-3.9692	-0.0020095	506.27708601960677	57.338	1.0472	57.106	56.497	57.544	-0.23191	0.033037	0.00035651	NaN	29.15	64	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2378500	+		79955	31313	55771	55864							0.03883242074334703
TLYHPSNI	8	Unmodified	_TLYHPSNI_					0	0	0			REV__ENSG00000131375|ENST00000253693|CAPN7	REV__ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2845764160156	2	472.745442	943.476331	0.025984	1.2284E-05	0.23947	0.00011321	0.26545	0.00012549	472.745377654112	53.116	0.75858	53.212	52.906	53.664	0.095669					32	20	2	0	0	0	0.027866	1	5702	5702		16.473	3.514	1	295740	+		79956	23203	55772	55865	88510	88510					0.002332118633717073
TLYHRAAV	8	Unmodified	_TLYHRAAV_					0	0	0		ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7607421875	2	465.761426	929.5083	0.15209	7.0838E-05	-1.608	-0.00074894	-1.4559	-0.0006781	465.7606084022292	86.637	1.8854	86.45	85.991	87.877	-0.18695					107	44	4	0	0	0	0.53523	1	10559	10559		82.305	5.4584	1	4526900			79957	3015	55773	55866	88511	88511					0.04072624337175057
TLYHRAAV	8	Unmodified	_TLYHRAAV_					0	0	0		ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.76068115234375	2	465.761426	929.5083	0.65909	0.00030698	-2.1902	-0.0010201	-1.5311	-0.00071314	465.7603284371423	86.585	2.299	86.443	85.884	88.183	-0.14217					155	54	4	0	0	0	0.43637	1	10539	10539		92.191	3.5478	1	4715700			79958	3015	55773	55866	88512	88512					0.04072624337175057
TLYIDRIW	8	Unmodified	_TLYIDRIW_					0	0	0		ENST00000518188.5_1_8:82586107-82591385:-|nuORF	ENST00000518188.5_1_8:82586107-82591385:-|nuORF	ENST00000518188.5_1_8:82586107-82591385:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.818359375	2	540.297842	1078.58113	-0.36759	-0.00019861	2.2765	0.00123	1.909	0.0010314	540.2986045253738	74.557	0.63654	74.374	73.918	74.555	-0.18279					23	14	3	0	0	0	0.027866	1	8799	8799		26.796	4.8362	1	256240			79959	15924	55774	55867	88513	88513					0.04498333339938654
TLYITTFF	8	Unmodified	_TLYITTFF_					0	0	0			REV__nc|ENSG00000126251|O15529|GPR42	REV__nc|ENSG00000126251|O15529|GPR42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7820129394531	2	503.268219	1004.52188	-0.29873	-0.00015034	-0.080681	-4.0604E-05	-0.37941	-0.00019095	503.26825982461594	47.733	0.4874	47.58	47.371	47.858	-0.15301					23	14	2	0	0	0	0.027866	1	4778	4778		35.201	0	1	374260	+		79960	22887	55775	55868	88514	88514					0.019804373257557017
TLYNTEVLL	9	Unmodified	_TLYNTEVLL_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.272705078125	2	533.294965	1064.57538	-0.30891	-0.00016474	-0.51844	-0.00027648	-0.82735	-0.00044122	533.2946969987396	78.173	1.1563	78.017	77.7	78.856	-0.15591					55	26	4	0	0	0	0.02435	1	9320	9320		60.972	23.813	1	1102800			79961	6224	55776	55869	88515	88515					0.04567190037619184
TLYSFILI	8	Unmodified	_TLYSFILI_					0	0	0			REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7442321777344	2	485.286411	968.55827	0.19823	9.6201E-05	-3.6323	-0.0017627	-3.4341	-0.0016665	485.2845623794175	61.661	0.89467	61.435	61.189	62.084	-0.22663					32	23	2	0	0	0	0.027866	1	7218	7218		33.516	0	1	326770	+		79962	23739	55777	55870	88516	88516					0.07273314222470617
TLYSFILI	8	Unmodified	_TLYSFILI_					0	0	0			REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.286411	968.55827	-0.0081416	-3.951E-06	-3.2871	-0.0015952	-3.2953	-0.0015991	485.2848277444894	61.435	0.8291	61.435	61.18	62.009	0	-0.013522	-2.4706E-05	NaN	12.207	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319740	+		79963	23739	55777	55870							0.07273314222470617
TLYSFILI	8	Unmodified	_TLYSFILI_					0	0	0			REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	REV__nc|ENSG00000137251|Q9UJW2-2|TINAG	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	485.286411	968.55827	-0.24481	-0.0001188	-2.8616	-0.0013887	-3.1064	-0.0015075	485.2849301972112	61.405	0.93061	61.476	61.095	62.026	0.071129	0.027515	0.0003883	NaN	12.207	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314750	+		79964	23739	55777	55870							0.07273314222470617
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	489.2519226074219	2	489.252243	976.489932	-0.91952	-0.00044988	1.2588	0.00061589	0.33932	0.00016601	489.2527027348977	65.064	1.4482	65.064	64.617	66.065	0					81	39	5	0	0	0	0.03849	1	7674	7674		134.81	28.396	1	4919000			79965	3541	55778	55871	88517	88517					0.0007470158031992469
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.251953125	2	489.252243	976.489932	-0.9299	-0.00045496	1.1483	0.00056182	0.21843	0.00010687	489.25271096842425	65.379	1.5097	65.106	64.712	66.221	-0.27282					85	40	4	0	0	0	0.013293	2	7701	7681;7701		176.09	36.116	1	4275400			79966	3541	55778	55871	88518;88519	88519					0.0007470158031992469
TMADQIVTV	9	Unmodified	_TMADQIVTV_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.2521667480469	2	489.252243	976.489932	-0.65426	-0.0003201	0.87016	0.00042573	0.21591	0.00010563	489.25258207178166	65.063	1.2701	65.101	64.743	66.013	0.037384					78	34	5	0	0	0	0.014918	2	7590	7590;7603		209.84	42.611	1	5326400			79967	3541	55778	55871	88520;88521	88520					0.0007470158031992469
TMAKKMKMP	9	Unmodified	_TMAKKMKMP_					0	0	0		ENST00000465930.1_1_2:98744784-98750261:+|nuORF	ENST00000465930.1_1_2:98744784-98750261:+|nuORF	ENST00000465930.1_1_2:98744784-98750261:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.8207397460938	2	533.284508	1064.55446	-0.72473	-0.00038649	0.84442	0.00045031	0.11969	6.3829E-05	533.2823672872073	69.064	1.6818	69.064	67.987	69.669	0					80	43	3	0	0	0	0.024374	1	8382	8382		40.778	6.6056	1	295980			79968	14799	55779	55872	88522	88522					0.024768618611005877
TMAKVITTVL	10	Unmodified	_TMAKVITTVL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.27880859375	2	538.822835	1075.63112	-0.26	-0.00014009	-3.3643	-0.0018128	-3.6243	-0.0019529	538.8207120784842	84.925	0.53487	84.788	84.62	85.155	-0.13753					24	12	3	0	0	0	0.03519	1	10252	10252		32.812	0	1	207220			79969	5759	55780	55873	88523	88523					0.09632699953590418
TMALFVSPSL	10	Unmodified	_TMALFVSPSL_					0	0	0			REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	REV__ENST00000290795.7_1_1:46126251-46126365:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.24853515625	2	533.286085	1064.55762	-0.91424	-0.00048755	-2.058	-0.0010975	-2.9723	-0.0015851	533.2845299694537	48.863	0.6467	48.763	48.655	49.301	-0.1008					26	16	2	0	0	0	0.03519	1	4922	4922		32.812	0	1	183600	+		79970	29937	55781	55874	88524	88524					0.02792151511107477
TMAQYISEI	9	Unmodified	_TMAQYISEI_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B;REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2803344726562	2	528.257525	1054.5005	-0.04023	-2.1252E-05	-2.2141	-0.0011696	-2.2544	-0.0011909	528.2562604564215	69.189	0.6983	68.946	68.626	69.325	-0.24277					35	16	3	0	0	0	0.024292	1	8004	8004		58.782	5.4305	1	388630	+		79971	28456;23780	55782	55875	88525	88525					-0.024573157652639566
TMARLTGAW	9	Unmodified	_TMARLTGAW_					0	0	0			REV__ENST00000533626.5_1_11:8013664-8014474:+|nuORF	REV__ENST00000533626.5_1_11:8013664-8014474:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7606506347656	2	503.760569	1005.50659	-0.36018	-0.00018145	0.44882	0.0002261	0.088639	4.4653E-05	503.76064943333705	65.335	0.98286	65.1	64.607	65.59	-0.2345					45	23	3	0	0	0	0.45795	1	7468	7468		62.107	10.772	1	2105600	+		79972	34613	55783	55876	88526	88526					0.00405247256912844
TMCLKVLNQ	9	Unmodified	_TMCLKVLNQ_					0	0	0			REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7948608398438	2	525.277738	1048.54092	-0.38503	-0.00020225	0.62866	0.00033022	0.24363	0.00012797	525.2778573924628	36.461	0.90844	36.499	36.133	37.041	0.038044					52	24	3	0	0	0	0.024523	1	2785	2785		21.96	0	1	702850	+		79973	29169	55784	55877	88527	88527					0.01859327353486151
TMDKQPLNT	9	Unmodified	_TMDKQPLNT_					0	0	0		nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.32861328125	2	524.260599	1046.50665	-0.14994	-7.8606E-05	-1.7869	-0.00093678	-1.9368	-0.0010154	524.2595231352556	79.488	0.74254	79.506	79.11	79.853	0.018677					35	17	3	0	0	0	0.024292	1	9824	9824		49.442	5.3247	1	287620			79974	3450	55786	55878	88528	88528					-0.014747975337286334
TMDSCCVE	8	Unmodified	_TMDSCCVE_					0	0	0		ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	ENSG00000181481|ENST00000328381|RNF135	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.28741455078125	2	444.150814	886.287075	0.84465	0.00037515	3.6252	0.0016101	4.4698	0.0019853	444.15318806826	18.141	0.14626	17.985	17.904	18.05	-0.15637					4	2	2	0	0	0	0.027866	1	268	268		7.6903	4.2803	1	6824.6			79975	9046	55787	55879	88529	88529					-0.16061687808110037
TMEARDKTN	9	Unmodified	_TMEARDKTN_					0	0	0			REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.7889404296875	2	533.253305	1064.49206	-0.46121	-0.00024594	1.0979	0.00058545	0.63667	0.00033951	533.2536563606409	64.262	0.67979	64.034	63.74	64.42	-0.22774					43	16	4	0	0	0	0.023842	1	7289	7289		49.536	1.5765	1	574120	+		79976	20645	55788	55880	88530	88530					-0.037608696818551834
TMEATPASPI	10	Unmodified	_TMEATPASPI_					0	0	0		ENST00000284856.3_1_Y:15817281-15817344:+|nuORF	ENST00000284856.3_1_Y:15817281-15817344:+|nuORF	ENST00000284856.3_1_Y:15817281-15817344:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.292724609375	2	509.2497	1016.48485	-0.48689	-0.00024795	-3.091	-0.0015741	-3.5779	-0.0018221	509.24801642974484	64.87	0.72017	64.635	64.413	65.133	-0.2345					39	17	3	0	0	0	0.03519	1	7365	7365		27.882	2.3082	1	962120			79977	11747	55789	55881	88531	88531					-0.02273602282309639
TMEKQYECN	9	Unmodified	_TMEKQYECN_					0	0	0		nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2789916992188	2	573.233724	1144.45289	-0.32258	-0.00018491	-0.47113	-0.00027007	-0.79371	-0.00045498	573.23284571523	77.608	0.42764	77.446	77.225	77.653	-0.16196					17	9	4	0	0	0	0.024477	1	9216	9216		20.947	1.587	1	244260			79978	10053	55790	55882	88532	88532					-0.11355338027738071
TMEQPKQSL	9	Unmodified	_TMEQPKQSL_					0	0	0			REV__OR10X1|p.K277Sfs*11|1|0.08|ENSG00000279111|chr1:158579072-158579072|C/-|frameshift_variant	REV__OR10X1|p.K277Sfs*11|1|0.08|ENSG00000279111|chr1:158579072-158579072|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2671508789062	2	531.268424	1060.5223	-0.52182	-0.00027723	-1.8264	-0.00097031	-2.3482	-0.0012475	531.2672316351087	20.709	0.79307	20.485	20.216	21.009	-0.22344					30	15	3	0	0	0	0.70156	1	555	555		45.972	0	1	689630	+		79979	37307	55791	55883	88533	88533					-0.005545110166849554
TMESYLSESL	10	Unmodified	_TMESYLSESL_					0	0	0		ENST00000510921.5_1_5:86688679-86700752:-|nuORF;ENSG00000134480|ENST00000256897|CCNH	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.7401733398438	2	580.263004	1158.51146	-1.1722	-0.00068016	0.77598	0.00045027	-0.39618	-0.00022989	580.263087664555	35.386	0.23556	35.174	35.038	35.274	-0.21246					6	5	2	0	0	0	0.03519	1	2686	2686		40.778	0	1	39128			79980	4800	55792	55884	88534	88534					-0.06145958181627975
TMFIVAINCR	10	Unmodified	_TMFIVAINCR_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.3563842773438	2	584.304287	1166.59402	-1.0403	-0.00060787	-3.1155	-0.0018204	-4.1559	-0.0024283	584.3022603869439	91.948	2.411	91.825	90.955	93.366	-0.12242					104	56	3	0	0	0	0.03519	1	11179	11179		19.104	0	1	376220	+		79981	20514	55793	55885	88535	88535					0.017387051361538397
TMGPRIQP	8	Unmodified	_TMGPRIQP_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MSMS	OPSCC_40_ClassI_Rep-3	6	450.2441101074219	2	450.242012	898.469472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.157	1	31.005	30.505	31.505	-0.15231								0	0	0	0.71153	1	2027	2027		40.573	4.9543	1		+		79982	26587	55794	55886	88536	88536					0.016175757111682287
TMGRVPAPA	9	Unmodified	_TMGRVPAPA_					0	0	0			REV__ENST00000406555.7_1_9:139557386-139563011:+|nuORF	REV__ENST00000406555.7_1_9:139557386-139563011:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.24334716796875	2	450.242012	898.469472	-0.4364	-0.00019649	0.35485	0.00015977	-0.081549	-3.6717E-05	450.2421079739635	31.07	0.70716	30.885	30.576	31.283	-0.18503					61	17	5	0	0	0	0.70156	1	2037	2037		45.972	1.8554	1	1296400	+		79983	31922	55795	55887	88537	88537					0.0161757571115686
TMHIFSYF	8	Unmodified	_TMHIFSYF_					0	0	0			REV__nc|ENSG00000162711|Q96P20-3|NLRP3	REV__nc|ENSG00000162711|Q96P20-3|NLRP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.32568359375	2	523.244221	1044.47389	-0.20787	-0.00010877	-1.7591	-0.00092043	-1.967	-0.0010292	523.2433137760113	81.12	0.70502	80.978	80.736	81.441	-0.14248					32	16	3	0	0	0	0.027866	1	9699	9699		19.36	0	1	249770	+		79984	25478	55796	55888	88538	88538					-0.04656959865951649
TMHKPPLLL	9	Unmodified	_TMHKPPLLL_					0	0	0			REV__nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	REV__nc|ENSG00000054690|Q9ULM0-2|PLEKHH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2869873046875	2	525.312438	1048.61032	0.25988	0.00013652	-1.4421	-0.00075757	-1.1823	-0.00062105	525.3114185739838	82.156	0.51564	81.935	81.701	82.217	-0.22015					17	11	2	0	0	0	0.024541	1	9913	9913		7.6903	0	1	138650	+		79985	35106	55797	55889	88539	88539					0.08796154364586073
TMIIKFILA	9	Unmodified	_TMIIKFILA_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2665405273438	2	525.325014	1048.63547	-0.10656	-5.5981E-05	2.0825	0.001094	1.9759	0.001038	525.3262940268985	51.249	0.57176	50.973	50.702	51.274	-0.27643					20	14	2	0	0	0	0.024535	1	5227	5227		12.207	0	1	273120	+		79986	21800	55798	55890	88540	88540					0.11310209167163521
TMIIKFILA	9	Unmodified	_TMIIKFILA_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.325014	1048.63547	-0.53491	-0.000281	3.4072	0.0017899	2.8723	0.0015089	525.3268084678415	51.048	0.55017	51.048	50.845	51.395	0	0.041026	0.00029692	NaN	12.207	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	738580	+		79987	21800	55798	55890							0.11310209167163521
TMIIKFILA	9	Unmodified	_TMIIKFILA_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.325014	1048.63547	-0.62189	-0.00032669	3.2754	0.0017206	2.6535	0.0013939	525.3267842998416	51.285	0.61366	51.136	50.861	51.475	-0.14916	0.12917	0.00015836	NaN	12.207	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726960	+		79988	21800	55798	55890							0.11310209167163521
TMIIKFILA	9	Unmodified	_TMIIKFILA_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	525.325014	1048.63547	-0.74449	-0.0003911	3.2349	0.0016994	2.4904	0.0013083	525.3267215721853	50.882	0.66073	50.969	50.75	51.411	0.087006	-0.03797	0.00011582	NaN	12.207	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609670	+		79989	21800	55798	55890							0.11310209167163521
TMILKLQTG	9	Unmodified	_TMILKLQTG_					0	0	0			REV__ENSG00000177706|ENST00000313766|FAM20C	REV__ENSG00000177706|ENST00000313766|FAM20C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.76348876953125	2	502.794078	1003.5736	-0.33476	-0.00016831	-0.040671	-2.0449E-05	-0.37543	-0.00018876	502.79404018681333	39.261	0.60513	39.036	38.6	39.205	-0.2257					26	16	2	0	0	0	0.024506	1	3306	3306		10.866	0	1	359610	+		79990	27141	55799	55891	88541	88541					0.07195857748013168
TMIMGWLSL	9	Unmodified	_TMIMGWLSL_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.26806640625	2	526.269381	1050.52421	-0.21026	-0.00011065	-0.57609	-0.00030318	-0.78634	-0.00041383	526.2689580473678	78.168	0.8279	78.184	77.863	78.69	0.015907					54	19	4	0	0	0	0.75397	1	9589	9589		42.396	8.2236	1	1729800	+		79991	28508	55800	55892	88542	88542					0.0009682646757482871
TMIRLRRYKIL	11	Unmodified	_TMIRLRRYKIL_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2690734863281	3	488.306146	1461.89661	0.13541	6.612E-05	-0.1989	-9.7126E-05	-0.063498	-3.1006E-05	488.30661909719794	47.052	0.39305	46.899	46.659	47.052	-0.15301					16	9	3	0	0	0	0.024876	1	4637	4637		5.6988	2.847	1	122250	+		79992	27591	55801	55893	88543	88543					0.1841358886690614
TMISDVVTH	9	Unmodified	_TMISDVVTH_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.28973388671875	2	501.749867	1001.48518	-0.37927	-0.0001903	-3.4939	-0.0017531	-3.8732	-0.0019434	501.7480250761071	98.532	0.51697	98.367	98.158	98.675	-0.1652					17	11	2	0	0	0	0.024487	1	12199	12199		11.511	0.64546	1	61679	+		79993	19773	55802	55894	88544	88544					-0.015501825624596677
TMKETLQSD	9	Unmodified	_TMKETLQSD_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7589111328125	2	526.750064	1051.48558	-0.48534	-0.00025565	-2.4628	-0.0012973	-2.9482	-0.001553	526.7488503137625	56.872	0.3354	56.705	56.597	56.932	-0.1672					11	8	2	0	0	0	0.024541	1	6202	6202		19.997	4.355	1	219530	+		79994	28328	55803	55895	88545	88545					-0.038108076332719065
TMKHRAAS	8	Unmodified	_TMKHRAAS_					0	0	0			REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2510070800781	2	451.237261	900.45997	-0.35078	-0.00015829	-0.33229	-0.00014994	-0.68307	-0.00030823	451.2371120998554	32.821	0.56847	32.821	32.606	33.174	0					25	14	2	0	0	0	0.027866	1	2363	2363		30.504	0	1	119300	+		79995	29026	55804	55896	88546	88546					0.005758074256277723
TMKHRAAS	8	Unmodified	_TMKHRAAS_					0	0	0			REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	REV__KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2508850097656	2	451.237261	900.45997	-0.38904	-0.00017555	0.46413	0.00020943	0.075085	3.3881E-05	451.2370623435392	32.677	0.67259	32.689	32.45	33.123	0.011799					28	17	3	0	0	0	0.027866	1	2319	2319		30.504	14.03	1	183150	+		79996	29026	55804	55896	88547	88547					0.005758074256277723
TMKMLKDIK	9	Unmodified	_TMKMLKDIK_					0	0	0		nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3223266601562	2	554.316863	1106.61917	-0.12285	-6.8097E-05	2.2117	0.001226	2.0888	0.0011579	554.317999916401	68.586	0.46281	68.294	68.171	68.634	-0.29267					19	11	2	0	0	0	0.024397	1	8179	8179		47.657	10.498	1	196040			79997	18851	55805	55897	88548	88548					0.07012759938743329
TMKRIFKLL	9	Unmodified	_TMKRIFKLL_					0	0	0			REV__TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	REV__TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.8190307617188	2	575.362462	1148.71037	-0.10555	-6.0731E-05	-2.2248	-0.0012801	-2.3304	-0.0013408	575.3610595227125	68.321	0.71861	68.34	67.93	68.648	0.018913					33	18	2	0	0	0	0.024374	1	8148	8148		25.574	0	1	190160	+		79998	20242	55806	55898	88549	88549					0.14196391698396837
TMKRIFKLL	9	Unmodified	_TMKRIFKLL_					0	0	0			REV__TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	REV__TARBP1|p.Q892Lfs*4|1|0.17|ENSG00000059588|chr1:234429597-234429612|GAGAGGCACACCCATT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	574.8192749023438	2	575.362462	1148.71037	0.25372	0.00014598	-2.4159	-0.00139	-2.1622	-0.0012441	575.3610622170211	68.206	0.69087	67.951	67.74	68.431	-0.25516					28	16	2	0	0	0	0.024495	1	7936	7936		34.173	7.4796	1	151270	+		79999	20242	55806	55898	88550	88550					0.14196391698396837
TMKRVSCNL	9	Unmodified	_TMKRVSCNL_					0	0	0		ENST00000298310.9_1_14:50319457-50319715:-|nuORF	ENST00000298310.9_1_14:50319457-50319715:-|nuORF	ENST00000298310.9_1_14:50319457-50319715:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3072509765625	2	526.272986	1050.53142	-0.96694	-0.00050888	3.4776	0.0018302	2.5106	0.0013213	526.2745993284858	48.53	0.91308	48.432	47.78	48.693	-0.097553					34	24	2	0	0	0	0.024319	1	4748	4748		47.657	0	1	619580			80000	11873	55807	55899	88551	88551					0.00817559067968432
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(160)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.26019287109375	2	475.260402	948.506251	1.0588	0.0005032	-1.3333	-0.00063364	-0.27447	-0.00013045	475.25973950444927	40.475	1.0166	40.475	40.137	41.153	0					95	28	5	0	0	0	0.014738	6	3555	3544;3555;3567;3578;3590;3603		163.15	64.135	1	11350000			80001	8381	55808	55900	88552;88553;88554;88555;88556;88557	88553		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(160)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	475.260498046875	2	475.260402	948.506251	0.27874	0.00013247	-0.36087	-0.00017151	-0.082128	-3.9032E-05	475.2601304419995	43.366	4.0604	43.366	41.153	45.214	0					249	115	3	0	0	0	0.014738	14	4082	4013;4023;4035;4046;4058;4070;4082;4094;4105;4118;4130;4143;4157;4174		163.15	80.846	1	7426500			80002	8381	55808	55900	88558;88559;88560;88561;88562;88563;88564;88565;88566;88567;88568;88569;88570;88571	88564		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(140)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.2605285644531	2	475.260402	948.506251	1.2193	0.00057947	-1.5121	-0.00071866	-0.29287	-0.00013919	475.25965810031556	40.626	0.99778	40.503	40.123	41.12	-0.12317					95	27	5	0	0	0	0.034407	7	3603	3545;3554;3565;3577;3589;3603;3617		138.06	55.822	1	10895000			80003	8381	55808	55900	88572;88573;88574;88575;88576;88577;88578	88577		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(140)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.2607421875	2	475.260402	948.506251	-0.1858	-8.8303E-05	0.13136	6.2432E-05	-0.054435	-2.5871E-05	475.260380646554	43.529	3.7389	43.388	41.482	45.221	-0.14151					256	106	4	0	0	0	0.034407	12	4025	4025;4035;4048;4057;4069;4081;4094;4106;4118;4131;4145;4157		138.06	66.185	1	7526600			80004	8381	55808	55900	88579;88580;88581;88582;88583;88584;88585;88586;88587;88588;88589;88590	88579		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(150)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2606201171875	2	475.260402	948.506251	-0.17207	-8.178E-05	-1.3516	-0.00064234	-1.5236	-0.00072412	475.2602686051321	40.691	0.97869	40.714	40.311	41.29	0.023006					94	27	6	0	0	0	0.01896	7	3512	3512;3521;3533;3545;3557;3571;3584		150.36	68.449	1	12805000			80005	8381	55808	55900	88591;88592;88593;88594;88595;88596;88597	88591		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(150)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.2608337402344	2	475.260402	948.506251	0.31471	0.00014957	-0.41951	-0.00019938	-0.1048	-4.9807E-05	475.2600954592017	43.527	4.0354	43.558	41.262	45.298	0.030827					246	114	3	0	0	0	0.023452	12	3985	3974;3985;3997;4006;4019;4031;4043;4055;4069;4082;4092;4110		146.79	74.908	1	6923700			80006	8381	55808	55900	88598;88599;88600;88601;88602;88603;88604;88605;88606;88607;88608;88609	88599		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(140)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.260498046875	2	475.260402	948.506251	-0.24905	-0.00011836	0.92194	0.00043816	0.67289	0.0003198	475.26066683533134	40.609	1.2026	40.46	40.078	41.28	-0.1497					86	31	4	0	0	0	0.034407	5	3557	3521;3534;3545;3557;3570		138.06	75.955	1	6528300			80007	8381	55808	55900	88610;88611;88612;88613;88614	88613		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(150)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.2604064941406	2	475.260402	948.506251	-0.10731	-5.1002E-05	-0.49441	-0.00023497	-0.60172	-0.00028597	475.26008562968485	43.451	5.2189	43.338	41.238	46.457	-0.11253					275	141	2	0	0	0	0.01896	11	3984	3950;3960;3971;3984;3996;4007;4019;4031;4043;4055;4068		150.36	70.911	1	5592600			80008	8381	55808	55900	88615;88616;88617;88618;88619;88620;88621;88622;88623;88624;88625	88618		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(130)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.26019287109375	2	475.260402	948.506251	0.46633	0.00022163	-0.37515	-0.00017829	0.091185	4.3337E-05	475.26012938104446	50.57	0.93085	50.458	50.159	51.09	-0.11163					46	24	2	0	0	0	0.056725	3	5143	5143;5154;5166		126.24	44.002	1	3278300			80009	8381	55808	55900	88626;88627;88628	88626		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(150)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.2603759765625	2	475.260402	948.506251	-0.16735	-7.9536E-05	0.8121	0.00038596	0.64475	0.00030642	475.2605828641556	40.791	1.2894	40.566	40.187	41.476	-0.22501					89	33	5	0	0	0	0.025498	4	3575	3538;3556;3575;3589		145.16	62.851	1	5955000			80010	8381	55808	55900	88629;88630;88631;88632	88631		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(140)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.2601318359375	2	475.260402	948.506251	-0.63601	-0.00030227	0.09649	4.5858E-05	-0.53952	-0.00025641	475.26026970037464	43.643	4.7626	43.406	41.306	46.068	-0.23737					316	128	4	0	0	0	0.034407	13	4017	3919;3959;3971;3981;3993;4006;4017;4031;4042;4055;4067;4081;4093		138.06	66.185	1	6018600			80011	8381	55808	55900	88633;88634;88635;88636;88637;88638;88639;88640;88641;88642;88643;88644;88645	88639		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(130)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2606506347656	2	475.260402	948.506251	-1.2561	-0.00059696	1.8079	0.00085924	0.55188	0.00026229	475.2610928050346	40.839	1.2375	40.609	40.196	41.434	-0.23029					86	32	4	0	0	0	0.056725	3	3551	3539;3551;3581		126.24	72.891	1	6508700			80012	8381	55808	55900	88646;88647;88648	88647		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(160)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2602233886719	2	475.260402	948.506251	-0.85062	-0.00040426	0.059976	2.8504E-05	-0.79064	-0.00037576	475.260307440688	43.61	4.3626	43.391	41.364	45.727	-0.21939					253	119	3	0	0	0	0.014738	12	3989	3953;3966;3976;3989;4001;4014;4024;4036;4048;4060;4074;4087		163.15	75.397	1	6293200			80013	8381	55808	55900	88649;88650;88651;88652;88653;88654;88655;88656;88657;88658;88659;88660	88652		346			0.029938275370682277
TMLARLASA	9	Oxidation (M)	_TM(Oxidation (M))LARLASA_		TM(1)LARLASA		TM(110)LARLASA	0	0	1		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.2598876953125	2	475.260402	948.506251	0.28727	0.00013653	-0.18709	-8.8914E-05	0.10018	4.7614E-05	475.2602468488863	50.65	0.81271	50.469	50.172	50.984	-0.18071					36	21	2	0	0	0	0.10464	1	5166	5166		109.48	43.049	1	1696100			80014	8381	55808	55900	88661	88661		346			0.029938275370682277
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.2622985839844	2	467.262945	932.511337	-0.32689	-0.00015274	0.29631	0.00013846	-0.030572	-1.4285E-05	467.2630977112149	50.559	2.2943	50.559	50.178	52.472	0					146	64	5	0	0	0	0.023452	7	5350	5277;5288;5300;5312;5324;5335;5350		146.79	67.334	1	31710000			80015	8381	55808	55901	88662;88663;88664;88665;88666;88667;88668	88668					0.042381313996770587
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	467.26275634765625	2	467.262945	932.511337	0.089871	4.1993E-05	-0.072446	-3.3851E-05	0.017425	8.1422E-06	467.2628762571784	50.757	2.099	50.608	50.225	52.324	-0.14916					162	59	5	0	0	0	0.023452	8	5306	5283;5294;5306;5318;5330;5344;5356;5381		146.79	75.49	1	40302000			80016	8381	55808	55901	88669;88670;88671;88672;88673;88674;88675;88676	88671					0.042381313996770587
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.26300048828125	2	467.262945	932.511337	0.62754	0.00029322	-0.57814	-0.00027014	0.049399	2.3082E-05	467.2626421665451	50.379	2.2543	50.46	50.18	52.434	0.080994					138	62	5	0	0	0	0.015512	7	5206	5185;5195;5206;5218;5230;5244;5256		159.28	68.499	1	35147000			80017	8381	55808	55901	88677;88678;88679;88680;88681;88682;88683	88679					0.042381313996770587
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.26318359375	2	467.262945	932.511337	0.30284	0.0001415	-0.4255	-0.00019882	-0.12266	-5.7316E-05	467.2627211445789	50.568	1.8254	50.456	50.121	51.946	-0.11163					141	48	5	0	0	0	0.012922	9	5128	5120;5128;5140;5152;5164;5176;5188;5201;5216		172.25	69.475	1	33362000			80018	8381	55808	55901	88684;88685;88686;88687;88688;88689;88690;88691;88692	88685					0.042381313996770587
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.2630615234375	2	467.262945	932.511337	0.3148	0.0001471	-0.493	-0.00023036	-0.1782	-8.3267E-05	467.26271140701425	50.777	1.8227	50.5	50.224	52.047	-0.27643					141	48	5	0	0	0	0.012922	8	5193	5148;5157;5169;5181;5193;5206;5218;5230		172.25	103.46	1	36416000			80019	8381	55808	55901	88693;88694;88695;88696;88697;88698;88699;88700	88697					0.042381313996770587
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.26239013671875	2	467.262945	932.511337	0.12424	5.8053E-05	-0.34461	-0.00016102	-0.22037	-0.00010297	467.26276418369247	50.694	1.9844	50.514	50.172	52.156	-0.18071					135	52	5	0	0	0	0.030064	9	5194	5125;5133;5145;5157;5169;5181;5194;5208;5221		141.52	70.558	1	34691000			80020	8381	55808	55901	88701;88702;88703;88704;88705;88706;88707;88708;88709	88707					0.042381313996770587
TMLDLRLL	8	Unmodified	_TMLDLRLL_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.7724304199219	2	487.788795	973.563038	0.48839	0.00023823	2.6641	0.0012995	3.1525	0.0015378	487.7902059300633	86.309	2.0917	86.171	85.198	87.289	-0.13734					83	48	4	0	0	0	0.027866	1	10366	10366		55.504	0	1	312020	+		80021	25710	55809	55902	88710	88710					0.0751987509358969
TMLDLRLL	8	Unmodified	_TMLDLRLL_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.788795	973.563038	0.69149	0.0003373	2.3911	0.0011663	3.0826	0.0015036	487.7902315305287	86.312	1.1204	86.17	85.841	86.962	-0.14218	-0.00052504	-0.00020045	NaN	55.504	63	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382880	+		80022	25710	55809	55902							0.0751987509358969
TMLGLVGLEI	10	Unmodified	_TMLGLVGLEI_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3038940429688	2	523.301736	1044.58892	0.50944	0.00026659	2.7838	0.0014567	3.2932	0.0017233	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	1.0508	1	10352	10352		39.253	0	1	3714800	+		80023	29003	55810	55903	88711	88711					0.06840724545213561
TMLIIVHRTRN	11	Unmodified	_TMLIIVHRTRN_					0	0	0			REV__nc|ENSG00000243649|P00751-2|CFB	REV__nc|ENSG00000243649|P00751-2|CFB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9327392578125	3	451.930968	1352.77107	-0.033264	-1.5033E-05	3.7241	0.001683	3.6908	0.001668	451.9325712651887	98.979	1.8976	98.81	97.997	99.894	-0.16863					182	46	5	0	0	0	1.0501	1	12337	12337		25.068	0	1	1141700	+		80024	37163	55811	55904	88712	88712					0.10879877010688688
TMLLCLLL	8	Unmodified	_TMLLCLLL_					0	0	0			REV__nc|ENSG00000186642|O00408-5|PDE2A	REV__nc|ENSG00000186642|O00408-5|PDE2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	460.2722473144531	2	460.271393	918.528232	-0.53477	-0.00024614	0.48773	0.00022449	-0.047044	-2.1653E-05	460.2716485380996	61.283	0.8149	61.026	60.732	61.547	-0.25704					39	19	3	0	0	0	0.85409	1	6849	6849		54.765	0	1	1279200	+		80025	27874	55812	55905	88713	88713					0.06570915961276569
TMLLFCQPA	9	Carbamidomethyl (C)	_TMLLFC(Carbamidomethyl (C))QPA_	TMLLFC(1)QPA		TMLLFC(58)QPA		0	1	0		nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.7642822265625	2	540.764463	1079.51437	-0.2368	-0.00012805	0.079665	4.308E-05	-0.15714	-8.4974E-05	540.7643940942081	50.096	1.755	49.816	49.397	51.152	-0.27977					119	46	4	0	0	0	0.52323	1	5098	5098		57.811	11.859	1	11668000			80026	18151	55813	55906	88714	88714	237				-0.022203615378430186
TMLLIAHYY	9	Unmodified	_TMLLIAHYY_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2257690429688	2	562.794078	1123.5736	-0.4091	-0.00023024	-2.2533	-0.0012682	-2.6624	-0.0014984	562.7920871543492	56.4	0.59661	56.244	55.972	56.569	-0.15656					25	14	3	0	0	0	0.024183	1	6137	6137		71.378	27.001	1	336660			80027	5189	55814	55907	88715	88715					0.016758577480004533
TMLLIAHYY	9	Unmodified	_TMLLIAHYY_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	562.794078	1123.5736	-0.54655	-0.0003076	-2.6555	-0.0014945	-3.202	-0.0018021	562.7922964306297	56.271	0.53652	56.271	56.035	56.571	0	0.047065	0.00023343	NaN	71.378	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507750			80028	5189	55814	55907							0.016758577480004533
TMLLIAHYY	9	Unmodified	_TMLLIAHYY_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	562.794078	1123.5736	-0.78326	-0.00044081	-3.1032	-0.0017465	-3.8865	-0.0021873	562.7922759563219	56.397	0.54811	56.233	56.023	56.571	-0.16431	0.0087094	-0.00027058	NaN	71.378	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527860			80029	5189	55814	55907							0.016758577480004533
TMLLIAHYY	9	Unmodified	_TMLLIAHYY_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	562.794078	1123.5736	-1.0492	-0.00059047	-2.9551	-0.0016631	-4.0043	-0.0022536	562.7923689508457	56.053	0.72073	56.151	55.931	56.652	0.097897	-0.072972	-0.00010383	NaN	71.378	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605760			80030	5189	55814	55907							0.016758577480004533
TMLLKKFR	8	Unmodified	_TMLLKKFR_					0	0	0		ENST00000319888.10_1_18:2538642-2538774:-|nuORF	ENST00000319888.10_1_18:2538642-2538774:-|nuORF	ENST00000319888.10_1_18:2538642-2538774:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2774658203125	2	518.82043	1035.62631	0.8961	0.00046491	-1.0267	-0.00053265	-0.13056	-6.7738E-05	518.8197248775434	51.12	0.69267	50.939	50.647	51.34	-0.18071					31	17	3	0	0	0	0.027866	1	5251	5251		27.882	1.0861	1	661930			80031	12189	55815	55908	88716	88716					0.10991860601461667
TMLLKPVTV	9	Unmodified	_TMLLKPVTV_					0	0	0			REV__OR10G8|p.I204*|1|0.25|ENSG00000234560|chr11:124030231-124030231|A/-|frameshift_variant	REV__OR10G8|p.I204*|1|0.25|ENSG00000234560|chr11:124030231-124030231|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.28997802734375	2	501.306821	1000.59909	-0.70164	-0.00035174	-3.035	-0.0015215	-3.7366	-0.0018732	501.3051223644051	83.333	0.72491	83.359	83.003	83.727	0.026558					33	16	3	0	0	0	0.024427	1	10325	10325		19.997	0.89325	1	228430	+		80032	28917	55816	55909	88717	88717					0.09881332270447274
TMLLSLKPQ	9	Unmodified	_TMLLSLKPQ_					0	0	0			REV__ENSG00000167094|ENST00000373289|TTC16	REV__ENSG00000167094|ENST00000373289|TTC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.7757568359375	2	515.801903	1029.58925	-0.91348	-0.00047118	3.9125	0.0020181	2.9991	0.0015469	515.8041425966005	25.071	0.41856	25.071	24.83	25.248	0					20	9	3	0	0	0	0.024261	1	1131	1131		45.972	8.8131	1	101120	+		80033	26101	55817	55910	88718	88718					0.07564144265052164
TMLLSLKPQ	9	Unmodified	_TMLLSLKPQ_					0	0	0			REV__ENSG00000167094|ENST00000373289|TTC16	REV__ENSG00000167094|ENST00000373289|TTC16	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.801903	1029.58925	-0.72132	-0.00037206	3.9693	0.0020474	3.2479	0.0016753	515.8039552481401	25.652	0.41393	25.425	25.231	25.645	-0.22683	0.23703	7.9048E-05	NaN	45.972	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	561000	+		80034	26101	55817	55910							0.07564144265052164
TMLLSLKPQ	9	Unmodified	_TMLLSLKPQ_					0	0	0			REV__ENSG00000167094|ENST00000373289|TTC16	REV__ENSG00000167094|ENST00000373289|TTC16	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.801903	1029.58925	-0.1364	-7.0356E-05	3.0582	0.0015774	2.9218	0.0015071	515.8036560222317	25.459	0.76252	25.288	24.737	25.499	-0.17078	0.10029	-0.00086079	NaN	45.972	31	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469710	+		80035	26101	55817	55910							0.07564144265052164
TMLPILNPL	9	Unmodified	_TMLPILNPL_					0	0	0			REV__ENST00000532268.1_1_11:126134081-126134120:-|nuORF	REV__ENST00000532268.1_1_11:126134081-126134120:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3046875	2	506.298996	1010.58344	0.49189	0.00024904	-3.3909	-0.0017168	-2.899	-0.0014677	506.29709813747695	69.7	0.83189	69.407	69.129	69.96	-0.29291					36	20	2	0	0	0	0.024323	1	8377	8377		53.351	0	1	1374300	+		80036	34579	55818	55911	88719	88719					0.07857045753394232
TMLPILNPLF	10	Unmodified	_TMLPILNPLF_					0	0	0			REV__ENST00000532268.1_1_11:126134081-126134120:-|nuORF	REV__ENST00000532268.1_1_11:126134081-126134120:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.2883911132812	2	579.833203	1157.65185	-0.41363	-0.00023984	1.9955	0.001157	1.5819	0.00091721	579.8344635362508	79.464	0.41781	79.245	79.076	79.494	-0.21922					14	9	2	0	0	0	0.03519	1	9504	9504		39.253	0	1	90987	+		80037	34579	55819	55912	88720	88720					0.07933290333244258
TMLQAQLSL	9	Unmodified	_TMLQAQLSL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.77447509765625	2	502.775885	1003.53722	-0.90271	-0.00045386	-2.4034	-0.0012084	-3.3061	-0.0016622	502.7744210359641	90.264	1.1948	90.264	89.816	91.011	0					70	28	4	0	0	0	0.28753	1	11404	11404		77.318	3.0625	1	1064200			80038	5441	55820	55913	88721	88721					0.0355898085130093
TMLQAQLSL	9	Unmodified	_TMLQAQLSL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	502.775885	1003.53722	-0.036211	-1.8206E-05	-3.1932	-0.0016055	-3.2294	-0.0016237	502.7739714993665	90.256	1.6193	90.239	89.162	90.781	-0.016716	0.063399	-0.00014558	NaN	77.318	80	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	895810			80039	5441	55820	55913							0.0355898085130093
TMLQAQLSL	9	Unmodified	_TMLQAQLSL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.775885	1003.53722	-0.89797	-0.00045148	-1.9033	-0.00095692	-2.8013	-0.0014084	502.77467113071395	90.24	1.2078	90.085	89.436	90.644	-0.1552	-0.090507	0.0011515	NaN	77.318	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601800			80040	5441	55820	55913							0.0355898085130093
TMLQAQLSL	9	Unmodified	_TMLQAQLSL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.775885	1003.53722	-0.67257	-0.00033815	-1.9178	-0.0009642	-2.5903	-0.0013024	502.7745514014005	90.199	1.2937	90.074	89.459	90.753	-0.12513	-0.10152	0.001137	NaN	77.318	76	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585380			80041	5441	55820	55913							0.0355898085130093
TMLQAQLSL	9	Unmodified	_TMLQAQLSL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.775885	1003.53722	-0.016911	-8.5022E-06	-3.044	-0.0015304	-3.0609	-0.0015389	502.7742244149297	90.243	0.82793	90.105	89.835	90.663	-0.13824	-0.070721	4.4595E-06	NaN	77.318	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554930			80042	5441	55820	55913							0.0355898085130093
TMLQRLEQLVE	11	Unmodified	_TMLQRLEQLVE_					0	0	0		nc|ENSG00000107551|Q9H2L5-3|RASSF4;ENSG00000107551|ENST00000340258|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF	nc|ENSG00000107551|Q9H2L5-3|RASSF4	nc|ENSG00000107551|Q9H2L5-3|RASSF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	454.22479248046875	3	453.914872	1358.72279	-0.25933	-0.00011772	-2.1627	-0.00098169	-2.422	-0.0010994	454.2479953665811	38.584	0.49008	38.365	38.117	38.607	-0.21849					20	12	2	0	0	0	0.024723	1	3173	3173		19.627	7.6946	1	145490			80043	2841	55821	55914	88722	88722					0.057773385801056065
TMLSPLEMEL	10	Unmodified	_TMLSPLEMEL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.8171997070312	2	582.287968	1162.56138	-0.65422	-0.00038094	2.9206	0.0017006	2.2664	0.0013197	582.2894411065022	65.002	0.48042	64.768	64.49	64.971	-0.2345					18	11	2	0	0	0	0.03519	1	7431	7431		19.997	0	1	371020			80044	8336	55822	55915	88723	88723					-0.013395467773307246
TMLSRGHSK	9	Unmodified	_TMLSRGHSK_					0	0	0			REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;REV__nc|ENSG00000114805|Q4KWH8|PLCH1	REV__nc|ENSG00000114805|Q4KWH8|PLCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2415771484375	2	508.768926	1015.5233	0.026282	1.3372E-05	2.4512	0.0012471	2.4775	0.0012605	508.77062877655464	36.43	0.48051	36.214	36.05	36.531	-0.21661					14	11	2	0	0	0	0.024447	1	2873	2873		32.812	9.2897	1	114560	+		80045	22146;36582	55823	55916	88724	88724					0.016157481428876963
TMLTARGII	9	Unmodified	_TMLTARGII_					0	0	0		FPR2|p.I208Hfs*4|1|0.34|ENSG00000171049|chr19:51769277-51769278|-/T|frameshift_variant;ENSG00000171049|ENST00000340023|FPR2	FPR2|p.I208Hfs*4|1|0.34|ENSG00000171049|chr19:51769277-51769278|-/T|frameshift_variant	FPR2|p.I208Hfs*4|1|0.34|ENSG00000171049|chr19:51769277-51769278|-/T|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	488.2869873046875	2	488.28642	974.558287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.46	1	102.34	101.84	102.84	-0.12666								0	0	0	0.6291	1	12741	12741		35.618	0	1				80046	8106	55824	55917	88725	88725					0.06998990950842199
TMLVVLNN	8	Unmodified	_TMLVVLNN_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.2680358886719	2	452.252046	902.489538	-0.60221	-0.00027235	0.63952	0.00028922	0.037307	1.6872E-05	452.25234676278495	33.151	0.84483	32.985	32.556	33.401	-0.16565					40	20	3	0	0	0	0.027866	1	2292	2292		47.916	7.343	1	166580	+		80047	26520	55825	55918	88726	88726					0.0343932665111879
TMMFLDKPIL	10	Unmodified	_TMMFLDKPIL_					0	0	0		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;ENSG00000172572|ENST00000359062|PDE3A	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.5538635253906	3	403.552106	1207.63449	-0.43834	-0.00017689	4.0327	0.0016274	3.5944	0.0014505	403.55359958868013	29.424	1.3888	29.275	28.912	30.301	-0.14952					105	32	6	0	0	0	1.1333	1	1801	1801		28.081	1.0342	1	3316200			80048	8291	55826	55919	88727	88727					0.038976267359430494
TMMMKMNQI	9	Unmodified	_TMMMKMNQI_					0	0	0			REV__ENST00000521922.5_1_8:103291424-103292663:-|nuORF	REV__ENST00000521922.5_1_8:103291424-103292663:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.2999267578125	2	564.257633	1126.50071	1.5851	0.00089443	4.1172	0.0023232	5.7023	0.0032176	564.2599062758188	74.304	0.38034	74.304	74.128	74.509	0					12	8	2	0	0	0	0.024261	1	9109	9109		45.972	0	1	73117	+		80049	34328	55827	55920	88728	88728					-0.0574767863292891
TMNGLLTLLY	10	Unmodified	_TMNGLLTLLY_					0	0	0			REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7749633789062	2	569.812467	1137.61038	-0.059182	-3.3723E-05	-3.0538	-0.0017401	-3.113	-0.0017738	569.8107767981667	77.97	0.37584	77.708	77.528	77.904	-0.26202					10	8	2	0	0	0	0.03519	1	9271	9271		56.721	5.3856	1	70569	+		80050	36905	55828	55921	88729	88729					0.047081095739486045
TMNKDLSGDL	10	Unmodified	_TMNKDLSGDL_					0	0	0			REV__ENSG00000119004|ENST00000356079|CYP20A1	REV__ENSG00000119004|ENST00000356079|CYP20A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.3283081054688	2	547.263339	1092.51212	-1.1513	-0.00063005	-0.08305	-4.545E-05	-1.2343	-0.0006755	547.2632660354485	57.343	0.25992	57.438	57.281	57.541	0.095306					10	6	2	0	0	0	0.03519	1	6373	6373		49.536	0	1	502700	+		80051	22436	55829	55922	88730	88730					-0.030431187419253547
TMNSATITTK	10	Unmodified	_TMNSATITTK_					0	0	0			REV__ENSG00000283039|ENST00000634670|KLF18	REV__ENSG00000283039|ENST00000634670|KLF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2755737304688	2	534.273706	1066.53286	-0.36733	-0.00019625	-3.2255	-0.0017233	-3.5928	-0.0019195	534.2705675156524	49.931	0.47758	49.779	49.482	49.96	-0.1512					18	12	2	0	0	0	0.03519	1	5147	5147		47.96	11.513	1	101340	+		80052	29241	55830	55923	88731	88731					0.002254716377137811
TMPGKFFYF	9	Unmodified	_TMPGKFFYF_					0	0	0		ENST00000470889.5_1_3:138327497-138329643:+|nuORF	ENST00000470889.5_1_3:138327497-138329643:+|nuORF	ENST00000470889.5_1_3:138327497-138329643:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2780151367188	2	569.275521	1136.53649	-0.3875	-0.00022059	4.0513	0.0023063	3.6638	0.0020857	569.2773055914291	83.06	1.3771	82.921	82.088	83.465	-0.1386					94	31	4	0	0	0	0.62163	1	9938	9938		51.335	1.8939	1	969920			80053	14943	55831	55924	88732	88732					-0.026318137977341394
TMQFLLDIS	9	Unmodified	_TMQFLLDIS_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.274169921875	2	534.275718	1066.53688	0.97122	0.0005189	-4.2006	-0.0022443	-3.2294	-0.0017254	534.2733088708584	23.119	0.50624	22.928	22.617	23.124	-0.19117					23	10	3	0	0	0	0.82115	1	853	853		37.812	3.639	1	270350			80054	9118	55832	55925	88733	88733					0.006275611314549678
TMQFLLDIS	9	Unmodified	_TMQFLLDIS_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	534.275718	1066.53688	0.065392	3.4937E-05	-2.9088	-0.0015541	-2.8434	-0.0015191	534.2738622833407	23.009	0.79208	22.807	22.361	23.153	-0.20193	-0.095389	-0.00010197	NaN	37.812	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246730			80055	9118	55832	55925							0.006275611314549678
TMQFLLDIS	9	Unmodified	_TMQFLLDIS_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.275718	1066.53688	-0.81701	-0.00043651	-2.1852	-0.0011675	-3.0022	-0.001604	534.2743932149064	23.151	0.54495	22.971	22.697	23.242	-0.17989	0.069126	0.00067115	NaN	37.812	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255490			80056	9118	55832	55925							0.006275611314549678
TMQKKDKKT	9	Oxidation (M)	_TM(Oxidation (M))QKKDKKT_		TM(1)QKKDKKT		TM(76)QKKDKKT	0	0	1			REV__ENSG00000205927|ENST00000382357|OLIG2	REV__ENSG00000205927|ENST00000382357|OLIG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.30859375	2	562.310623	1122.60669	-0.45996	-0.00025864	-2.6958	-0.0015159	-3.1557	-0.0017745	562.3092713126148	69.073	1.2743	69.073	68.641	69.915	0					100	32	4	0	0	0	0.29609	1	8287	8287		76.17	6.5421	1	6071100	+		80057	28697	55833	55926	88734	88734		851			0.050294398000460205
TMQKKDKKT	9	Oxidation (M)	_TM(Oxidation (M))QKKDKKT_		TM(1)QKKDKKT		TM(72)QKKDKKT	0	0	1			REV__ENSG00000205927|ENST00000382357|OLIG2	REV__ENSG00000205927|ENST00000382357|OLIG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.30908203125	2	562.310623	1122.60669	-0.60248	-0.00033878	-2.6167	-0.0014714	-3.2192	-0.0018102	562.3093187449479	69.113	1.6808	69.128	68.234	69.914	0.015129					111	43	4	0	0	0	0.32538	1	8225	8225		72.243	15.522	1	5939300	+		80058	28697	55833	55926	88735	88735		851			0.050294398000460205
TMRFTCLW	8	Unmodified	_TMRFTCLW_					0	0	0		ENST00000433544.1_1_1:94219789-94240816:-|nuORF	ENST00000433544.1_1_1:94219789-94240816:-|nuORF	ENST00000433544.1_1_1:94219789-94240816:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.2506103515625	2	529.251523	1056.48849	0.71404	0.00037791	-2.0253	-0.0010719	-1.3112	-0.00069396	529.2504680872586	51.351	0.90662	51.24	50.896	51.803	-0.11163					63	23	4	0	0	0	0.6248	1	5275	5275		73.975	8.5094	1	1894200			80059	14230	55834	55927	88736	88736					-0.03749210989462881
TMRMGKCVL	9	Unmodified	_TMRMGKCVL_					0	0	0			REV__ENST00000409652.4_1_22:36052503-36054741:+|nuORF	REV__ENST00000409652.4_1_22:36052503-36054741:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3052368164062	2	519.766483	1037.51841	-0.33956	-0.00017649	-2.8841	-0.001499	-3.2236	-0.0016755	519.7641120772333	93.827	0.54074	93.827	93.387	93.927	0					19	12	2	0	0	0	0.024292	1	11920	11920		32.812	0	1	132890	+		80060	31969	55835	55928	88737	88737					0.001154046842657408
TMRPTQKDS	9	Unmodified	_TMRPTQKDS_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2671508789062	2	532.263673	1062.51279	-0.62229	-0.00033122	-0.7621	-0.00040564	-1.3844	-0.00073686	532.2625437303474	20.712	0.29795	20.489	20.315	20.613	-0.22344					9	5	2	0	0	0	0.024397	1	555	555		31.53	0	1	24818			80061	6055	55836	55929	88738	88738					-0.015962793022254118
TMSMACVPLL	10	Unmodified	_TMSMACVPLL_					0	0	0			REV__ENSG00000141469|ENST00000321925|SLC14A1	REV__ENSG00000141469|ENST00000321925|SLC14A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.3001098632812	2	533.260699	1064.50684	-0.51807	-0.00027627	-3.3063	-0.0017631	-3.8244	-0.0020394	533.2595729149717	61.041	0.36583	61.112	60.91	61.276	0.071125					15	9	3	0	0	0	0.03519	1	6975	6975		29.15	11.785	1	179260	+		80062	24093	55837	55930	88739	88739					-0.0228283712974644
TMSNRFGRR	9	Unmodified	_TMSNRFGRR_					0	0	0			REV__ENST00000550150.1_1_12:56578483-56578864:-|nuORF	REV__ENST00000550150.1_1_12:56578483-56578864:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2261962890625	2	562.790724	1123.56689	-0.29941	-0.00016851	3.0086	0.0016932	2.7091	0.0015247	562.7919096437826	56.492	0.5537	56.267	55.99	56.544	-0.22479					23	13	2	0	0	0	0.024539	1	6139	6139		35.618	3.6634	1	449750	+		80063	34900	55838	55931	88740	88740					0.010053576400196107
TMSPRQTQ	8	Unmodified	_TMSPRQTQ_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.26123046875	2	474.732009	947.449465	0.14206	6.7442E-05	-3.4861	-0.0016549	-3.344	-0.0015875	474.7300583662088	33.65	0.56104	33.419	33.153	33.714	-0.23107					22	13	2	0	0	0	0.027866	1	2401	2401		37.159	0	1	268950			80064	9209	55839	55932	88741	88741					-0.026362200194512297
TMSVLRKIFV	10	Unmodified	_TMSVLRKIFV_					0	0	0		ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	ENSG00000103023|ENST00000567164|PRSS54	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.358642578125	2	597.357376	1192.7002	-1.2192	-0.0007283	3.2149	0.0019204	1.9957	0.0011921	597.3590702861352	98.599	1.5555	98.599	98.19	99.746	0					99	35	4	0	0	0	1.0393	1	12580	12580		40.778	1.5253	1	2988700			80065	2455	55840	55933	88742	88742					0.11155783973140387
TMTEPLLP	8	Unmodified	_TMTEPLLP_					0	0	0			REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2508850097656	2	451.238604	900.462655	0.086544	3.9052E-05	-3.5099	-0.0015838	-3.4233	-0.0015447	451.2367055212947	32.565	0.64692	32.628	32.315	32.962	0.062885					25	16	2	0	0	0	0.027866	1	2264	2264		60.294	33.601	1	141360	+		80066	25439	55841	55934	88743	88743					0.008442180399356403
TMTEQLFK	8	Unmodified	_TMTEQLFK_					0	0	0			REV__ENST00000518121.5_1_8:38250464-38262066:+|nuORF	REV__ENST00000518121.5_1_8:38250464-38262066:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7406311035156	2	499.254785	996.495018	-0.53164	-0.00026543	-0.17794	-8.8838E-05	-0.70959	-0.00035426	499.25435959954194	29.378	0.33707	29.229	29	29.337	-0.14952					15	7	3	0	0	0	0.027866	1	1771	1771		19.36	0	1	107160	+		80067	25832	55842	55935	88744	88744					-0.003369945570625532
TMTKIRNL	8	Unmodified	_TMTKIRNL_					0	0	0		ENST00000521575.1_1_17:4802781-4802940:+|nuORF	ENST00000521575.1_1_17:4802781-4802940:+|nuORF	ENST00000521575.1_1_17:4802781-4802940:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2497253417969	2	488.784044	975.553536	-0.25466	-0.00012447	-0.12861	-6.2862E-05	-0.38327	-0.00018733	488.7838696290322	33.448	0.50172	33.248	32.977	33.479	-0.20019					20	12	2	0	0	0	0.027866	1	2392	2392		30.504	0	1	527990			80068	16005	55843	55936	88745	88745					0.0647810680807197
TMTVQSLRN	9	Unmodified	_TMTVQSLRN_					0	0	0			REV__ENST00000446105.6_1_12:6761840-6762457:-|nuORF	REV__ENST00000446105.6_1_12:6761840-6762457:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2973022460938	2	525.274041	1048.53353	-0.019938	-1.0473E-05	2.909	0.001528	2.889	0.0015175	525.2753725804539	81.214	0.37133	80.986	80.776	81.147	-0.2289					20	8	3	0	0	0	0.024495	1	9748	9748		14.137	0	1	118240	+		80069	32600	55844	55937	88746	88746					0.011203110774658853
TMTVTINFTP	10	Unmodified	_TMTVTINFTP_					0	0	0			REV__CON__P02584	REV__CON__P02584	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	561.7947998046875	2	562.78645	1123.55835	-0.27625	-0.00015547	1.3522	0.00076097	1.0759	0.0006055	562.7866554736248	71.322	0.67874	71.333	71.05	71.729	0.010735					47	17	4	0	0	0	0.03519	1	8579	8579		60.118	12.461	1	647520	+	+	80070	19537	55845	55938	88747	88747					0.0015094616016995133
TMVFDIRI	8	Unmodified	_TMVFDIRI_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7744445800781	2	497.773145	993.531738	-0.099282	-4.942E-05	3.6482	0.001816	3.5489	0.0017666	497.7749738154906	100.92	0.87547	100.75	100.46	101.33	-0.17178					51	22	3	0	0	0	0.96769	1	12528	12528		42.396	1.8235	1	606910			80071	1804	55846	55939	88748	88748					0.03471302059483605
TMVGKIKR	8	Unmodified	_TMVGKIKR_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.8079528808594	2	466.78913	931.563706	-1.584	-0.00073942	0.91943	0.00042918	-0.66461	-0.00031024	466.7894789646692	21.446	0.34109	21.233	21.069	21.41	-0.2128					9	6	2	0	0	0	0.027866	1	654	654		27.882	1.1893	1	43921			80072	7059	55847	55940	88749	88749					0.09518714533294315
TMVLCQPR	8	Unmodified	_TMVLCQPR_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.2817077636719	2	474.243698	946.472843	0.0014273	6.7688E-07	3.6965	0.001753	3.6979	0.0017537	474.2452813607443	65.592	0.49776	65.35	65.085	65.583	-0.24145					15	11	2	0	0	0	0.027866	1	7487	7487		40.573	1.7665	1	99451	+		80073	20289	55848	55941	88750	88750					-0.002534975064918399
TMVPGLRR	8	Unmodified	_TMVPGLRR_					0	0	0		ENST00000260324.11_1_15:45927092-45951106:+|nuORF	ENST00000260324.11_1_15:45927092-45951106:+|nuORF	ENST00000260324.11_1_15:45927092-45951106:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7772521972656	2	465.271104	928.527655	0.41155	0.00019148	0.15098	7.0247E-05	0.56253	0.00026173	465.26851814644095	79.781	1.0373	79.803	79.194	80.232	0.021439					55	24	3	0	0	0	0.027866	1	9848	9848		31.955	0	1	404300			80074	11447	55849	55942	88751	88751					0.06053257356438735
TMVVNAEGIPI	11	Unmodified	_TMVVNAEGIPI_					0	0	0		ENSG00000168589|ENST00000305904|DYNLRB2	ENSG00000168589|ENST00000305904|DYNLRB2	ENSG00000168589|ENST00000305904|DYNLRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.3017578125	2	572.307549	1142.60055	-0.46715	-0.00026735	1.1776	0.00067395	0.71045	0.0004066	572.3079427644611	105.21	1.1602	105.21	104.79	105.95	-0.0015945					61	39	3	0	0	0	0.95664	1	13474	13474		46.457	1.4346	1	338300			80075	7841	55850	55943	88752	88752					0.034949215685401214
TMYIIWLV	8	Unmodified	_TMYIIWLV_					0	0	0		ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7898559570312	2	519.788264	1037.56198	-0.81427	-0.00042325	3.0062	0.0015626	2.1919	0.0011393	519.7897760984735	80.099	0.84146	80.099	79.744	80.585	0					66	19	4	0	0	0	0.85409	1	9932	9932		54.765	3.4292	1	4950200			80076	12960	55851	55944	88753	88753					0.0446966072468058
TMYIIWLV	8	Unmodified	_TMYIIWLV_					0	0	0		ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.8198852539062	2	519.788264	1037.56198	0.079118	4.1125E-05	2.485	0.0012917	2.5641	0.0013328	519.7894188339121	80.215	0.70639	79.978	79.662	80.369	-0.23784					55	16	4	0	0	0	0.027866	1	9639	9639		23.037	0	1	2617300			80077	12960	55851	55944	88754	88754					0.0446966072468058
TMYIIWLV	8	Unmodified	_TMYIIWLV_					0	0	0		ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.3334350585938	2	519.788264	1037.56198	0.48623	0.00025274	1.8568	0.00096515	2.343	0.0012179	519.7890696326845	80.227	0.75429	80.02	79.672	80.426	-0.20633					59	17	4	0	0	0	0.027866	1	9595	9595		37.028	7.8584	1	2640300			80078	12960	55851	55944	88755	88755					0.0446966072468058
TMYLFTLV	8	Unmodified	_TMYLFTLV_					0	0	0		ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2947692871094	2	494.264622	986.514691	-0.045506	-2.2492E-05	1.6958	0.00083818	1.6503	0.00081569	494.26458724622563	53.043	0.33075	53.043	52.901	53.232	0					12	8	2	0	0	0	0.027866	1	5738	5738		33.516	0	1	106950			80079	11071	55852	55945	88756	88756					0.020893814537089384
TNAARRPNSV	10	Unmodified	_TNAARRPNSV_					0	0	0		ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.271728515625	2	543.294153	1084.57375	-0.92891	-0.00050467	-2.9407	-0.0015977	-3.8696	-0.0021023	543.2924940820509	55.089	0.47005	54.943	54.686	55.156	-0.14609					23	12	2	0	0	0	0.03519	1	5906	5906		112.41	32.698	1	501340			80080	4004	55853	55946	88757	88757					0.03484993792221758
TNAARRPNSV	10	Unmodified	_TNAARRPNSV_					0	0	0		ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2722778320312	2	543.294153	1084.57375	-0.64019	-0.00034781	-3.7771	-0.0020521	-4.4173	-0.0023999	543.2920133288645	55.225	0.5221	55.019	54.722	55.244	-0.20613					24	14	2	0	0	0	0.03519	1	5928	5928		90.601	28.493	1	609600			80081	4004	55853	55946	88758	88758					0.03484993792221758
TNAARRPNSV	10	Unmodified	_TNAARRPNSV_					0	0	0		ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.294153	1084.57375	-0.77686	-0.00042207	-2.5879	-0.001406	-3.3648	-0.0018281	543.2926479211941	55.165	0.70331	55.014	54.782	55.485	-0.15036	0.022212	0.00016797	NaN	112.41	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2571800			80082	4004	55853	55946							0.03484993792221758
TNAEEDQVC	9	Unmodified	_TNAEEDQVC_					0	0	0			REV__nc|ENSG00000180881|Q9BXY5|CAPS2	REV__nc|ENSG00000180881|Q9BXY5|CAPS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.7511291503906	2	504.700571	1007.38659	-0.13244	-6.6843E-05	0.50736	0.00025606	0.37492	0.00018922	504.70070786811385	33.358	1.6155	33.127	32.221	33.837	-0.23107					46	39	2	0	0	0	0.024427	1	2476	2476		19.997	3.5236	1	125330	+		80083	36987	55854	55947	88759	88759					-0.11680830598163539
TNAPPHSPLT	10	Unmodified	_TNAPPHSPLT_					0	0	0			REV__nc|ENSG00000143575|O00165-2|HAX1	REV__nc|ENSG00000143575|O00165-2|HAX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.28759765625	2	517.766906	1033.51926	-0.056418	-2.9211E-05	-1.3115	-0.00067906	-1.3679	-0.00070827	517.7669660214973	49.922	0.51343	49.771	49.482	49.996	-0.1512					16	13	2	0	0	0	0.03519	1	5121	5121		16.717	5.2064	1	240720	+		80084	36737	55855	55948	88760	88760					0.0038398192079966975
TNAQRGKW	8	Unmodified	_TNAQRGKW_					0	0	0			REV__CON__Q3SX14	REV__CON__Q3SX14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7894592285156	2	480.754133	959.493713	0.29805	0.00014329	-1.2481	-0.00060005	-0.95008	-0.00045675	480.7534151912455	33.69	0.36065	33.459	33.232	33.593	-0.23107					14	8	2	0	0	0	0.027866	1	2438	2438		24.203	1.1603	1	542800	+	+	80085	19586	55856	55949	88761	88761					0.012345521890438249
TNAQRGKW	8	Unmodified	_TNAQRGKW_					0	0	0			REV__CON__Q3SX14	REV__CON__Q3SX14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	480.754133	959.493713	-0.87036	-0.00041843	-0.35033	-0.00016842	-1.2207	-0.00058685	480.7537414657275	33.601	0.47812	33.435	33.077	33.555	-0.16565	1.3549E-05	0.00026678	NaN	24.203	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438430	+	+	80086	19586	55856	55949							0.012345521890438249
TNAVVMHT	8	Unmodified	_TNAVVMHT_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.76318359375	2	436.71837	871.422187	0.12893	5.6308E-05	-3.4117	-0.00149	-3.2828	-0.0014337	436.7167251198568	36.879	0.8446	36.917	36.648	37.493	0.038044					46	21	4	0	0	0	0.027866	1	2870	2870		34.173	8.7224	1	1019700	+		80087	23668	55857	55950	88762	88762					-0.018667035598241455
TNAVYKKGPI	10	Unmodified	_TNAVYKKGPI_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7817993164062	2	545.816399	1089.61824	-1.1904	-0.00064974	4.1458	0.0022628	2.9554	0.0016131	545.818811347573	75.076	1.0422	75.076	74.509	75.551	0					60	26	3	0	0	0	0.03519	1	9246	9246		40.778	3.6191	1	1572500	+		80088	22907	55858	55951	88763	88763					0.07702004885709357
TNCDDQCSLLL	11	Unmodified	_TNCDDQCSLLL_					0	0	0			REV__ENST00000310806.8_1_14:45716397-45716508:-|nuORF	REV__ENST00000310806.8_1_14:45716397-45716508:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	612.76513671875	2	612.765388	1223.51622	0.27601	0.00016913	-0.21695	-0.00013294	0.059063	3.6192E-05	612.7651086115376	61.743	0.68536	61.517	61.189	61.874	-0.22663					40	17	3	0	0	0	0.97926	1	7136	7136		41.427	0.64845	1	2271900	+		80089	30194	55859	55952	88764	88764					-0.08659397310520944
TNCDDQCSLLL	11	Unmodified	_TNCDDQCSLLL_					0	0	0			REV__ENST00000310806.8_1_14:45716397-45716508:-|nuORF	REV__ENST00000310806.8_1_14:45716397-45716508:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	612.7659912109375	2	612.765388	1223.51622	-0.80614	-0.00049398	0.88472	0.00054213	0.078579	4.8151E-05	612.765766054178	61.444	0.75356	61.515	61.203	61.956	0.071129					48	19	3	0	0	0	0.82076	2	7026	7026;7036		56.434	5.6786	1	1995900	+		80090	30194	55859	55952	88765;88766	88765					-0.08659397310520944
TNCQDNTDGAH	11	Unmodified	_TNCQDNTDGAH_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;ENST00000479499.1_1_1:183079785-183086097:+|nuORF	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	588.2232055664062	2	588.222733	1174.43091	0.44803	0.00026354	-0.059398	-3.4939E-05	0.38864	0.0002286	588.2224051722148	84.56	1.0381	84.586	84.206	85.244	0.02655					67	24	4	0	0	0	0.97926	1	10507	10507		41.427	2.1738	1	1685400			80091	4943	55860	55953	88767	88767					-0.1493242645196915
TNCVHGYAE	9	Unmodified	_TNCVHGYAE_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.7560729980469	2	497.208366	992.40218	-0.19092	-9.4926E-05	3.4481	0.0017144	3.2572	0.0016195	497.21006022326054	39.403	0.29951	39.177	39.096	39.395	-0.2257					13	7	2	0	0	0	0.024506	1	3312	3312		6.3127	0	1	111610			80092	2842	55861	55954	88768	88768					-0.09432499290448959
TNDAKILV	8	Unmodified	_TNDAKILV_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.2553405761719	2	437.255643	872.496732	0.528	0.00023087	-0.4236	-0.00018522	0.10439	4.5647E-05	437.25533777611804	61.313	0.76182	61.313	60.996	61.758	0					40	19	3	0	0	0	0.44658	1	7097	7097		90.777	0	1	1468800	+		80093	21663	55862	55955	88769	88769					0.05538382523184282
TNDAKILV	8	Unmodified	_TNDAKILV_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	437.255643	872.496732	0.528	0.00023087	-0.4236	-0.00018522	0.10439	4.5647E-05	437.25533777611804	61.313	0.76182	61.313	60.996	61.758	0	0.026095	-0.00012418	NaN	90.777	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468800	+		80094	21663	55862	55955							0.05538382523184282
TNDAKILV	8	Unmodified	_TNDAKILV_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	437.255643	872.496732	0.37028	0.00016191	-0.19062	-8.3352E-05	0.17966	7.8555E-05	437.25545053313664	61.504	0.82931	61.278	60.937	61.766	-0.22663	-0.009124	7.9559E-05	NaN	90.777	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1513700	+		80095	21663	55862	55955							0.05538382523184282
TNDAKILV	8	Unmodified	_TNDAKILV_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	437.255643	872.496732	0.51965	0.00022722	-0.29213	-0.00012774	0.22752	9.9484E-05	437.2553637763812	61.199	0.68263	61.27	60.947	61.63	0.071129	-0.016971	-9.2085E-06	NaN	90.777	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1450800	+		80096	21663	55862	55955							0.05538382523184282
TNDKEFFY	8	Unmodified	_TNDKEFFY_					0	0	0			REV__ENSG00000215529|ENST00000400522|EFCAB8	REV__ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2383422851562	2	532.24019	1062.46583	-0.62255	-0.00033134	-3.3833	-0.0018007	-4.0059	-0.0021321	532.2382545945179	40.089	0.55164	39.94	39.707	40.258	-0.1497					38	14	3	0	0	0	0.87148	1	3450	3450		53.351	0	1	3881400	+		80097	28808	55863	55956	88770	88770					-0.06290815581701281
TNDSFEIR	8	Unmodified	_TNDSFEIR_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.23492431640625	2	491.235439	980.456324	-1.0811	-0.00053106	-0.29585	-0.00014533	-1.3769	-0.00067639	491.2351832129831	40.391	1.268	40.242	39.933	41.201	-0.1497					67	33	3	0	0	0	0.42912	1	3510	3510		93.195	8.2799	1	5006100			80098	8609	55864	55957	88771	88771					-0.034685838672317004
TNDSFEIR	8	Unmodified	_TNDSFEIR_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.235439	980.456324	-0.073734	-3.6221E-05	-1.6204	-0.00079601	-1.6942	-0.00083224	491.23453602870273	40.575	0.88594	40.35	40.004	40.89	-0.225	0.031005	-0.00088498	NaN	93.195	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2233300			80099	8609	55864	55957							-0.034685838672317004
TNECHELL	8	Unmodified	_TNECHELL_					0	0	0			REV__ENSG00000136928|ENST00000259455|GABBR2	REV__ENSG00000136928|ENST00000259455|GABBR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.73541259765625	2	479.718567	957.422581	0.029858	1.4324E-05	-3.6327	-0.0017427	-3.6029	-0.0017284	479.716468044829	60.03	0.29712	59.781	59.648	59.945	-0.24842					9	7	2	0	0	0	0.027866	1	6642	6642		24.203	0	1	172910			80100	23705	55865	55958	88772	88772					-0.05783328630627693
TNEELELSY	9	Unmodified	_TNEELELSY_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2869873046875	2	549.253494	1096.49243	-0.75452	-0.00041442	1.1941	0.00065585	0.43955	0.00024143	549.2540069415298	48.291	0.91655	48.193	47.593	48.51	-0.097553					35	24	2	0	0	0	0.024506	1	4694	4694		23.042	0	1	450580	+		80101	25846	55866	55959	88773	88773					-0.051951714810456906
TNEELPASNE	10	Unmodified	_TNEELPASNE_					0	0	0			REV__ENSG00000172262|ENST00000682664|ZNF131	REV__ENSG00000172262|ENST00000682664|ZNF131	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.3162231445312	2	552.2462	1102.47785	-0.92005	-0.00050809	-2.2811	-0.0012597	-3.2011	-0.0017678	552.2448118518059	43.89	1.6538	43.646	42.672	44.326	-0.2444					83	44	3	0	0	0	0.03519	1	4074	4074		44.377	7.2181	1	1225200	+		80102	26653	55867	55960	88774	88774					-0.06929243629178927
TNEHKALYQL	10	Unmodified	_TNEHKALYQL_					0	0	0			REV__ENSG00000134107|ENST00000256495|BHLHE40	REV__ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.8162231445312	2	608.81967	1215.62479	-0.59537	-0.00036247	-4.1543	-0.0025292	-4.7497	-0.0028917	608.8171045659574	99.725	1.2635	99.725	99.268	100.53	0					87	30	5	0	0	0	0.64538	1	12730	12730		71.877	3.0906	1	4514300			80103	23421	55868	55961	88775	88775					0.025598980464110355
TNESEICQR	9	Unmodified	_TNESEICQR_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2837524414062	2	540.242938	1078.47132	-0.44324	-0.00023946	1.2453	0.00067276	0.80204	0.0004333	540.243457855108	41.935	0.54854	41.812	41.527	42.076	-0.12299					28	14	3	0	0	0	0.024405	1	3709	3709		27.882	14.428	1	415040	+		80104	20928	55869	55962	88776	88776					-0.0647746006154648
TNESEICQR	9	Unmodified	_TNESEICQR_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.242938	1078.47132	-0.29468	-0.0001592	4.5826	0.0024757	4.2879	0.0023165	540.2448598084685	41.834	0.54491	41.834	41.542	42.087	0	-0.051645	0.0014887	NaN	27.882	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490600	+		80105	20928	55869	55962							-0.0647746006154648
TNESEICQR	9	Unmodified	_TNESEICQR_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.242938	1078.47132	-0.80137	-0.00043293	4.2339	0.0022873	3.4325	0.0018544	540.2449989399272	42.005	0.39892	41.873	41.716	42.115	-0.1322	-0.013251	0.0011119	NaN	27.882	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427670	+		80106	20928	55869	55962							-0.0647746006154648
TNESEICQR	9	Unmodified	_TNESEICQR_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.242938	1078.47132	-0.76639	-0.00041404	4.9737	0.002687	4.2073	0.0022729	540.2451611591704	41.968	0.65339	41.994	41.636	42.289	0.026012	0.10796	0.0019112	NaN	27.882	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394270	+		80107	20928	55869	55962							-0.0647746006154648
TNESTNHSW	9	Unmodified	_TNESTNHSW_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.2784423828125	2	538.225602	1074.43665	-0.73614	-0.00039621	0.18866	0.00010154	-0.54748	-0.00029467	538.2255976107573	29.968	0.37933	29.724	29.525	29.905	-0.24415					16	8	3	0	0	0	0.024477	1	1855	1855		35.618	0	1	73639			80108	7594	55870	55963	88777	88777					-0.09758959878013229
TNFARIEL	8	Unmodified	_TNFARIEL_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2889404296875	2	482.266542	962.51853	0.11801	5.6913E-05	-0.51112	-0.0002465	-0.39311	-0.00018958	482.2660889129145	63.647	1.082	63.395	63.048	64.13	-0.25141					59	29	3	0	0	0	0.027866	1	7363	7363		51.193	7.0759	1	1186600	+		80109	27875	55871	55964	88778	88778					0.03577187271753246
TNFARPLTN	9	Unmodified	_TNFARPLTN_					0	0	0			REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2745361328125	2	517.274898	1032.53524	-0.62608	-0.00032386	-0.57533	-0.0002976	-1.2014	-0.00062146	517.2746085938176	45.402	1.6177	45.253	44.796	46.414	-0.1488					161	46	7	0	0	0	0.1764	1	4354	4354		93.598	2.9967	1	34803000	+		80110	21156	55872	55965	88779	88779					0.020276881577274253
TNFCFWKNL	9	Unmodified	_TNFCFWKNL_					0	0	0		ENST00000366744.5_1_1:228296168-228296940:-|nuORF	ENST00000366744.5_1_1:228296168-228296940:-|nuORF	ENST00000366744.5_1_1:228296168-228296940:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.8080444335938	2	586.781502	1171.54845	-0.43865	-0.00025739	0.34793	0.00020416	-0.09072	-5.3233E-05	586.7830449938501	75.715	0.23294	75.54	75.389	75.622	-0.17548					6	5	2	0	0	0	0.024539	1	8961	8961		20.947	0	1	36774			80111	12826	55873	55966	88780	88780					-0.03046197054550248
TNFCMLTL	8	Unmodified	_TNFCMLTL_					0	0	0		NSD1|p.Y1997C|1|0.68|ENSG00000165671|chr5:177282562-177282562|A/G|missense_variant	NSD1|p.Y1997C|1|0.68|ENSG00000165671|chr5:177282562-177282562|A/G|missense_variant	NSD1|p.Y1997C|1|0.68|ENSG00000165671|chr5:177282562-177282562|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.7832946777344	2	471.724806	941.43506	0.25663	0.00012106	-1.0524	-0.00049645	-0.79579	-0.00037539	471.72411519034915	46.363	0.53355	46.267	46.039	46.572	-0.096649					29	14	3	0	0	0	0.027866	1	4502	4502		14.137	0	1	697060			80112	18891	55874	55967	88781	88781					-0.03800008491953122
TNFEDRNAF	9	Unmodified	_TNFEDRNAF_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.2877807617188	2	557.25162	1112.48869	-0.77637	-0.00043263	1.6825	0.00093759	0.90616	0.00050496	557.2520398130852	48.305	0.58057	48.208	47.966	48.547	-0.097553					31	15	3	0	0	0	0.024427	1	4772	4772		19.997	0	1	159900			80113	11022	55875	55968	88782	88782					-0.0630579646424394
TNFLIDTIAKQ	11	Unmodified	_TNFLIDTIAKQ_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.520751953125	3	421.902961	1262.68705	0.15814	6.6721E-05	0.76024	0.00032075	0.91838	0.00038747	421.9032213890965	31.963	0.71875	31.727	31.411	32.13	-0.23667					39	16	3	0	0	0	0.02475	1	2144	2144		30.139	0	1	401470			80114	4071	55876	55969	88783	88783					0.06621624394756509
TNFRLEEY	8	Unmodified	_TNFRLEEY_					0	0	0			REV__ENST00000556405.1_1_14:45251866-45252022:-|nuORF	REV__ENST00000556405.1_1_14:45251866-45252022:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.258544921875	2	536.258914	1070.50327	-1.0964	-0.00058797	0.93546	0.00050165	-0.16097	-8.6324E-05	536.2594317199504	53.222	0.90029	53.318	52.906	53.806	0.095669					86	24	5	0	0	0	0.95679	1	5687	5687		44.117	1.7207	1	7505900	+		80115	35035	55877	55970	88784	88784					-0.029157243160852886
TNFVKVFF	8	Unmodified	_TNFVKVFF_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.8006896972656	2	501.276378	1000.5382	-0.64203	-0.00032184	-2.9029	-0.0014551	-3.5449	-0.001777	501.27445554455375	44.918	0.51462	44.666	44.429	44.944	-0.25252					19	12	2	0	0	0	0.027866	1	4201	4201		42.474	5.3154	1	316420	+		80116	25596	55878	55971	88785	88785					0.037955632825287466
TNFVKVFF	8	Unmodified	_TNFVKVFF_					0	0	0			REV__ENSG00000163568|ENST00000368130|AIM2	REV__ENSG00000163568|ENST00000368130|AIM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	501.276378	1000.5382	-0.83193	-0.00041703	-2.657	-0.0013319	-3.4889	-0.0017489	501.2744667371224	44.751	0.39671	44.652	44.431	44.828	-0.099445	-0.0071744	0.00014058	NaN	33.516	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245860	+		80117	25596	55878	55971							0.037955632825287466
TNGDGEITLVE	11	Unmodified	_TNGDGEITLVE_					0	0	0		ENSG00000105507|ENST00000293255|CABP5	ENSG00000105507|ENST00000293255|CABP5	ENSG00000105507|ENST00000293255|CABP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.3258056640625	2	574.2775	1146.54045	-0.23796	-0.00013666	2.8354	0.0016283	2.5974	0.0014916	574.2791778961405	72.94	0.76608	72.675	72.17	72.936	-0.26479					22	17	2	0	0	0	0.024774	1	8559	8559		31.634	0	1	104900			80118	2684	55879	55972	88786	88786					-0.026960975609881643
TNILHGKKY	9	Unmodified	_TNILHGKKY_					0	0	0		ENST00000297792.9_1_6:18161585-18171663:+|nuORF;KDM1B|p.W82Gfs*82|1|0.19|ENSG00000165097|chr6:18162863-18162863|T/-|frameshift_variant	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.757080078125	2	537.308741	1072.60293	-0.84586	-0.00045449	1.0254	0.00055095	0.17954	9.6467E-05	537.3092396998472	53.416	0.43954	53.219	53.049	53.489	-0.19739					19	11	2	0	0	0	0.024539	1	5567	5567		20.947	6.0821	1	210070			80119	11866	55880	55973	88787	88787					0.06953138088510968
TNILHGKKY	9	Unmodified	_TNILHGKKY_					0	0	0		ENST00000297792.9_1_6:18161585-18171663:+|nuORF;KDM1B|p.W82Gfs*82|1|0.19|ENSG00000165097|chr6:18162863-18162863|T/-|frameshift_variant	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	ENST00000297792.9_1_6:18161585-18171663:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.308741	1072.60293	-1.2764	-0.00068581	1.239	0.00066573	-0.037366	-2.0077E-05	537.3094080714632	53.367	0.47088	53.22	52.985	53.456	-0.14723	-0.025214	0.00038206	NaN	20.947	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133950			80120	11866	55880	55973							0.06953138088510968
TNIRKNENL	9	Unmodified	_TNIRKNENL_					0	0	0			REV__nc|ENSG00000293504|Q99463|NPY6R	REV__nc|ENSG00000293504|Q99463|NPY6R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	551.3060302734375	2	551.304187	1100.59382	-0.70052	-0.0003862	1.3149	0.00072494	0.61442	0.00033873	551.3053243603531	33.477	1.0737	33.477	33.135	34.209	0					81	28	5	0	0	0	0.30449	1	2417	2417		75.043	0	1	13705000	+		80121	37244	55881	55974	88788	88788					0.04754744732167637
TNIRKNENL	9	Unmodified	_TNIRKNENL_					0	0	0			REV__nc|ENSG00000293504|Q99463|NPY6R	REV__nc|ENSG00000293504|Q99463|NPY6R	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.307373046875	2	551.304187	1100.59382	-1.0731	-0.00059158	1.7504	0.00096503	0.67738	0.00037344	551.3055758199167	33.306	0.9162	33.312	33.043	33.959	0.0066261					72	24	5	0	0	0	0.1158	1	2368	2368		107.01	0	1	14965000	+		80122	37244	55881	55974	88789	88789					0.04754744732167637
TNIYKILLL	9	Unmodified	_TNIYKILLL_					0	0	0		nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT	nc|ENSG00000164362|O14746-3|TERT	nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.7823486328125	2	545.847167	1089.67978	-0.43127	-0.00023541	0.039489	2.1555E-05	-0.39178	-0.00021385	545.8467577707852	75.588	0.31613	75.598	75.399	75.715	0.010376					11	8	2	0	0	0	0.024539	1	9179	9179		14.865	0	1	210050			80123	7269	55882	55975	88790	88790					0.13852936584999043
TNKATGKLI	9	Unmodified	_TNKATGKLI_					0	0	0		nc|ENSG00000112304|Q9NPJ3-2|ACOT13;ENSG00000112304|ENST00000230048|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	nc|ENSG00000112304|Q9NPJ3-2|ACOT13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.77667236328125	2	473.290017	944.565481	-0.068913	-3.2616E-05	3.5403	0.0016756	3.4714	0.001643	473.29144148810803	79.205	0.5375	79.033	78.819	79.356	-0.17226					13	12	2	0	0	0	0.024344	1	9802	9802		23.523	0	1	41184			80124	3198	55883	55976	88791	88791					0.09098046822919059
TNKIKCRRC	9	Unmodified	_TNKIKCRRC_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.280029296875	2	561.305152	1120.59575	-0.62917	-0.00035316	3.5955	0.0020182	2.9663	0.001665	561.3069617381951	39.371	0.52695	39.206	38.971	39.498	-0.16458					30	13	3	0	0	0	0.024539	1	3308	3308		14.865	0	1	1039800			80125	8679	55884	55977	88792	88792					0.04027758944789639
TNKIKCRRC	9	Unmodified	_TNKIKCRRC_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.280517578125	2	561.305152	1120.59575	-0.461	-0.00025876	3.4545	0.001939	2.9935	0.0016803	561.3068048510194	39.529	0.58643	39.306	39.035	39.622	-0.22311					33	14	3	0	0	0	0.024495	1	3329	3329		19.997	5.1319	1	806660			80126	8679	55884	55977	88793	88793					0.04027758944789639
TNKIRKPV	8	Unmodified	_TNKIRKPV_					0	0	0		SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|58|1|anti-sense	SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|58|1|anti-sense	SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|58|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.79766845703125	2	478.306001	954.597449	0.012272	5.8697E-06	0.029437	1.408E-05	0.041709	1.995E-05	478.305820527822	50.325	0.49294	50.045	49.802	50.295	-0.27977					21	12	3	0	0	0	0.027866	1	5088	5088		19.36	0	1	305410			80127	38012	55885	55978	88794	88794					0.11833459296701676
TNKRLLKAE	9	Unmodified	_TNKRLLKAE_					0	0	0			REV__ENST00000519728.5_1_8:56922755-56922824:+|nuORF	REV__ENST00000519728.5_1_8:56922755-56922824:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3116455078125	2	536.827298	1071.64004	0.5545	0.00029767	-1.3586	-0.00072935	-0.80413	-0.00043168	536.8268442671089	97.37	0.94798	97.233	96.746	97.694	-0.1367					36	20	2	0	0	0	0.024541	1	11993	11993		12.207	1.3411	1	65055	+		80128	34270	55886	55979	88795	88795					0.10708809634274985
TNKSQIRTW	9	Unmodified	_TNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3069458007812	2	567.306729	1132.59891	-0.052793	-2.995E-05	-0.20504	-0.00011632	-0.25783	-0.00014627	567.3065735290086	32.578	1.2986	32.341	31.611	32.91	-0.23667					72	30	4	0	0	0	0.015512	1	2258	2258		159.28	52.268	1	1632300			80129	4600	55887	55980	88796	88796					0.03791048594825952
TNKSQIRTW	9	Unmodified	_TNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3068237304688	2	567.306729	1132.59891	0.43444	0.00024646	-0.81993	-0.00046515	-0.38548	-0.00021869	567.3063028002106	32.653	1.1675	32.46	31.856	33.024	-0.19261					76	27	4	0	0	0	0.012922	2	2274	2261;2274		172.25	63.085	1	2296600			80130	4600	55887	55980	88797;88798	88798					0.03791048594825952
TNKSQIRTW	9	Unmodified	_TNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3070678710938	2	567.306729	1132.59891	-0.29244	-0.0001659	0.057213	3.2457E-05	-0.23523	-0.00013345	567.3067340350163	32.51	1.3388	32.353	31.948	33.286	-0.15772					78	32	4	0	0	0	0.012922	3	2231	2220;2231;2242		190.62	58.837	1	4189500			80131	4600	55887	55980	88799;88800;88801	88800					0.03791048594825952
TNKTLIYIL	9	Unmodified	_TNKTLIYIL_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2838745117188	2	539.828975	1077.6434	-0.64403	-0.00034767	0.38812	0.00020952	-0.25592	-0.00013815	539.8290256623958	41.671	0.60986	41.443	41.197	41.807	-0.2278					40	15	4	0	0	0	0.024539	1	3725	3725		27.882	7.4004	1	861570			80132	4839	55888	55981	88802	88802					0.10768059688280118
TNKTLIYIL	9	Unmodified	_TNKTLIYIL_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2828369140625	2	539.828975	1077.6434	-1.1264	-0.00060808	0.78827	0.00042553	-0.33817	-0.00018255	539.8292044014378	41.707	0.5914	41.476	41.274	41.865	-0.2303					36	15	3	0	0	0	0.024535	1	3726	3726		25.45	0	1	932830			80133	4839	55888	55981	88803	88803					0.10768059688280118
TNKYYPNW	8	Unmodified	_TNKYYPNW_					0	0	0			REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.271728515625	2	543.256174	1084.49779	-0.38591	-0.00020965	3.955	0.0021486	3.5691	0.0019389	543.2582898484277	55.523	0.48242	55.292	55.065	55.547	-0.23087					22	13	2	0	0	0	0.027866	1	5926	5926		106.42	13.22	1	355720	+		80134	23502	55889	55982	88804	88804					-0.04107403107900609
TNLAILVYG	9	Unmodified	_TNLAILVYG_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.234375	2	482.279118	962.543683	0.15963	7.6985E-05	3.2148	0.0015504	3.3744	0.0016274	482.2804434322891	41.518	0.64358	41.382	40.947	41.591	-0.13553					20	16	2	0	0	0	0.024262	1	3678	3678		47.916	7.343	1	127550	+		80135	24502	55890	55983	88805	88805					0.060912420743420626
TNLAILVYG	9	Unmodified	_TNLAILVYG_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.23394775390625	2	482.279118	962.543683	-0.41279	-0.00019908	3.5266	0.0017008	3.1138	0.0015017	482.28067778206025	41.733	0.54134	41.505	41.121	41.662	-0.2278					18	13	2	0	0	0	0.024262	1	3702	3702		47.916	22.465	1	165550	+		80136	24502	55890	55983	88806	88806					0.060912420743420626
TNLAILVYG	9	Unmodified	_TNLAILVYG_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.23492431640625	2	482.279118	962.543683	-0.020437	-9.8565E-06	3.1542	0.0015212	3.1338	0.0015114	482.2806727621047	41.734	0.49318	41.504	41.157	41.651	-0.2303					19	12	2	0	0	0	0.024262	1	3684	3684		47.916	9.1095	1	122470	+		80137	24502	55890	55983	88807	88807					0.060912420743420626
TNLAILVYG	9	Unmodified	_TNLAILVYG_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.279118	962.543683	-0.020437	-9.8563E-06	4.3249	0.0020858	4.3045	0.002076	482.2809483490973	41.559	0.45395	41.436	41.12	41.574	-0.12318	-0.038668	0.00069267	NaN	47.916	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148390	+		80138	24502	55890	55983							0.060912420743420626
TNLAILVYG	9	Unmodified	_TNLAILVYG_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	482.279118	962.543683	-0.14181	-6.839E-05	3.7608	0.0018138	3.619	0.0017454	482.2809698074291	41.523	0.3118	41.546	41.358	41.67	0.023006	0.071658	0.00014857	NaN	47.916	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150910	+		80139	24502	55890	55983							0.060912420743420626
TNLASSQNF	9	Unmodified	_TNLASSQNF_					0	0	0			REV__ENSG00000152926|ENST00000282869|ZNF117	REV__ENSG00000152926|ENST00000282869|ZNF117	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.2347717285156	2	491.235439	980.456324	-1.0811	-0.00053106	-0.29585	-0.00014533	-1.3769	-0.00067639	491.2351832129831	40.391	1.268	40.242	39.933	41.201	-0.1497					67	33	3	0	0	0	0.31037	1	3498	3498		74.255	0	1	5006100	+		80140	24869	55891	55984	88808	88808					-0.03468583867220332
TNLFVPLYD	9	Unmodified	_TNLFVPLYD_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	542.26953125	2	541.281857	1080.54916	-0.12808	-6.9325E-05	-2.2373	-0.001211	-2.3654	-0.0012804	541.2804946345392	37.258	0.57589	37.065	36.774	37.35	-0.193					33	14	3	0	0	0	0.024477	1	3014	3014		20.947	0	1	875180	+		80141	20775	55892	55985	88809	88809					0.012109208661513549
TNLHIKKVP	9	Unmodified	_TNLHIKKVP_					0	0	0			REV__ENST00000361138.6_1_9:72965340-72965376:+|nuORF	REV__ENST00000361138.6_1_9:72965340-72965376:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.266845703125	2	525.326934	1048.63931	0.84419	0.00044347	-3.2019	-0.001682	-2.3577	-0.0012386	525.3259119264607	51.09	0.41989	50.909	50.723	51.143	-0.18071					14	10	2	0	0	0	0.024541	1	5232	5232		10.866	0	1	256780	+		80142	30934	55893	55986	88810	88810					0.11694014985209833
TNLLPQSLQ	9	Unmodified	_TNLLPQSLQ_					0	0	0		ENSG00000082397|ENST00000341928|EPB41L3	ENSG00000082397|ENST00000341928|EPB41L3	ENSG00000082397|ENST00000341928|EPB41L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.71435546875	2	507.284931	1012.55531	-1.4443	-0.00073265	3.1065	0.0015759	1.6623	0.00084325	507.2850595022628	33.813	0.46568	33.637	33.469	33.934	-0.17557					24	11	3	0	0	0	0.024495	1	2451	2451		26.693	0	1	234070			80143	1732	55894	55987	88811	88811					0.04953439097675982
TNLNEWYV	8	Unmodified	_TNLNEWYV_					0	0	0		ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	ENSG00000139800|ENST00000267294|ZIC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7476196289062	2	519.748182	1037.48181	1.7804	0.00092534	-2.5701	-0.0013358	-0.78972	-0.00041046	519.7467172564458	18.305	2.2357	18.305	18.038	20.274	0					103	45	3	0	0	0	0.71833	1	282	282		65.803	4.1119	1	472070			80144	5369	55895	55988	88812	88812					-0.03543109344809636
TNLNHLKDL	9	Unmodified	_TNLNHLKDL_					0	0	0			REV__CON__Q3MHH8	REV__CON__Q3MHH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7747802734375	2	534.29583	1066.57711	-0.85462	-0.00045662	-2.7037	-0.0014446	-3.5583	-0.0019012	534.2941495034269	85.222	1.2428	85.165	84.32	85.563	-0.05761					46	29	2	0	0	0	0.024389	1	10531	10531		51.193	3.5354	1	216650	+	+	80145	19584	55896	55989	88813	88813					0.04648243846236255
TNLNHLKDL	9	Unmodified	_TNLNHLKDL_					0	0	0			REV__CON__Q3MHH8	REV__CON__Q3MHH8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.29583	1066.57711	0.37714	0.00020151	-3.8855	-0.002076	-3.5083	-0.0018745	534.2935980764278	85.094	0.87426	85.094	84.669	85.543	0	-0.060663	-0.00096902	NaN	51.193	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170550	+	+	80146	19584	55896	55989							0.04648243846236255
TNLNHLKDL	9	Unmodified	_TNLNHLKDL_					0	0	0			REV__CON__Q3MHH8	REV__CON__Q3MHH8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.29583	1066.57711	-0.97155	-0.00051909	-2.5561	-0.0013657	-3.5276	-0.0018848	534.2944121160864	85.154	1.0786	85.179	84.62	85.699	0.025536	0.024443	0.00045156	NaN	51.193	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271860	+	+	80147	19584	55896	55989							0.04648243846236255
TNLNHLKDL	9	Unmodified	_TNLNHLKDL_					0	0	0			REV__CON__Q3MHH8	REV__CON__Q3MHH8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.29583	1066.57711	0.1455	7.774E-05	-2.9582	-0.0015806	-2.8127	-0.0015028	534.2941933755498	85.221	1.5183	85.026	84.552	86.071	-0.19508	-0.12845	2.1855E-05	NaN	51.193	56	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128300	+	+	80148	19584	55896	55989							0.04648243846236255
TNLNHLKDL	9	Unmodified	_TNLNHLKDL_					0	0	0			REV__CON__Q3MHH8	REV__CON__Q3MHH8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.29583	1066.57711	0.34169	0.00018256	-3.0577	-0.0016337	-2.7161	-0.0014512	534.2942007059004	85.259	1.8994	85.11	84.414	86.313	-0.14967	-0.044997	-8.4502E-05	NaN	51.193	68	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123460	+	+	80149	19584	55896	55989							0.04648243846236255
TNLNHLKDL	9	Unmodified	_TNLNHLKDL_					0	0	0			REV__CON__Q3MHH8	REV__CON__Q3MHH8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.29583	1066.57711	0.089182	4.7649E-05	-2.5205	-0.0013467	-2.4313	-0.0012991	534.294420234474	85.492	0.99979	85.354	84.577	85.577	-0.13753	0.19955	0.00048957	NaN	51.193	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84624	+	+	80150	19584	55896	55989							0.04648243846236255
TNLRHLWTL	9	Unmodified	_TNLRHLWTL_					0	0	0			REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.7901000976562	2	577.327465	1152.64038	0.32314	0.00018656	1.3208	0.00076256	1.644	0.00094911	577.3279311271707	79.054	1.9033	78.8	77.869	79.772	-0.25471					85	44	4	0	0	0	0.024367	1	9357	9357		22.58	0.61977	1	964310	+		80151	35101	55897	55990	88814	88814					0.07016229354121606
TNLSPPQSLLG	11	Unmodified	_TNLSPPQSLLG_					0	0	0			REV__ENSG00000186910|ENST00000334708|SERPINA11	REV__ENSG00000186910|ENST00000334708|SERPINA11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.761962890625	2	563.808771	1125.60299	-0.74953	-0.00042259	-0.09878	-5.5693E-05	-0.84831	-0.00047828	563.8088380494466	45.631	0.19963	45.429	45.259	45.458	-0.20226					9	5	2	0	0	0	0.02475	1	4317	4317		28.081	1.3886	1	160390	+		80152	27895	55898	55991	88815	88815					0.0452109329785344
TNLVRADTF	9	Unmodified	_TNLVRADTF_					0	0	0			REV__ENSG00000130589|ENST00000467148|HELZ2	REV__ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.3081665039062	2	518.774731	1035.53491	-1.4333	-0.00074358	0.47369	0.00024574	-0.95966	-0.00049784	518.7744940576412	48.959	0.50716	49.034	48.772	49.279	0.074196					26	13	3	0	0	0	0.024344	1	4999	4999		54.776	5.3348	1	490850	+		80153	23128	55899	55992	88816	88816					0.018562684378366612
TNMGLIRMS	9	Unmodified	_TNMGLIRMS_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7901306152344	2	511.759712	1021.50487	-0.64216	-0.00032863	-3.4255	-0.001753	-4.0677	-0.0020817	511.7579416842558	43.468	0.54593	43.23	42.839	43.385	-0.23736					21	14	2	0	0	0	0.024397	1	3922	3922		39.253	5.0803	1	380730	+		80154	23640	55900	55993	88817	88817					-0.005021298233259586
TNMNRIAR	8	Unmodified	_TNMNRIAR_					0	0	0			REV__nc|ENSG00000162298|Q86TM6-2|SYVN1	REV__nc|ENSG00000162298|Q86TM6-2|SYVN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.3001403808594	2	488.261268	974.507982	-0.037544	-1.8331E-05	1.4871	0.0007261	1.4496	0.00070777	488.26174813389895	68.38	0.51915	68.399	68.314	68.833	0.018913					21	13	2	0	0	0	0.027866	1	8178	8178		19.997	0	1	531720	+		80155	25425	55901	55994	88818	88818					0.01970881345687303
TNMYNTERA	9	Unmodified	_TNMYNTERA_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.298095703125	2	550.24548	1098.47641	-0.42277	-0.00023263	-1.0264	-0.00056477	-1.4492	-0.0007974	550.2447470800713	62.347	0.3918	62.089	61.897	62.289	-0.25824					14	9	2	0	0	0	0.024511	1	7027	7027		19.104	0	1	127460			80156	1527	55902	55995	88819	88819					-0.0688915619891759
TNNKQKPLIC	10	Unmodified	_TNNKQKPLIC_					0	0	0		ENST00000261488.10_1_13:44058165-44241601:-|nuORF	ENST00000261488.10_1_13:44058165-44241601:-|nuORF	ENST00000261488.10_1_13:44058165-44241601:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.7630004882812	2	579.818615	1157.62268	-0.93952	-0.00054475	1.6773	0.00097252	0.73776	0.00042777	579.819405329004	39.861	0.472	39.636	39.38	39.852	-0.225					16	11	2	0	0	0	0.03519	1	3395	3395		32.812	12.816	1	180320			80157	11474	55903	55996	88820	88820					0.05017146036993836
TNNLRPKKKVK	11	Unmodified	_TNNLRPKKKVK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.61834716796875	3	442.617377	1324.8303	1.3023	0.0005764	-1.1578	-0.00051246	0.14445	6.3934E-05	442.6168112482538	17.081	0.60054	16.926	16.609	17.209	-0.15403					32	11	4	0	0	0	0.96481	1	136	136		44.639	7.1313	1	302430			80158	10631	55904	55997	88821	88821					0.18088096296469303
TNNLRPKKKVK	11	Unmodified	_TNNLRPKKKVK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	442.617377	1324.8303	3.5883	0.0015883	-2.9069	-0.0012867	0.68142	0.00030161	442.9505050879524	16.95	0.34401	16.95	16.807	17.151	0	0.052493	-0.0029372	NaN	44.639	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21769			80159	10631	55904	55997							0.18088096296469303
TNNLRPKKKVK	11	Unmodified	_TNNLRPKKKVK_					0	0	0		ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	ENSG00000221983|ENST00000442744|UBA52	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	442.617377	1324.8303	0.66815	0.00029573	-0.30541	-0.00013518	0.36274	0.00016055	442.6172690869784	17.041	0.22641	16.898	16.79	17.016	-0.14278	0.0011872	0.00051723	NaN	44.639	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21420			80160	10631	55904	55997							0.18088096296469303
TNNPKNVNF	9	Unmodified	_TNNPKNVNF_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3;ENST00000471989.5_1_17:40475518-40477070:-|nuORF	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8212280273438	2	524.26453	1046.51451	-0.8351	-0.00043781	-0.35086	-0.00018395	-1.186	-0.00062176	524.7635239920908	48.264	0.10945	48.166	48.076	48.186	-0.097553					4	2	2	0	0	0	0.024466	1	4774	4774		24.519	13.008	1	48048			80161	7843	55905	55998	88822	88822					-0.0068890222196387185
TNNSSSISGV	10	Unmodified	_TNNSSSISGV_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.2342834472656	2	483.230353	964.446153	0.095927	4.6355E-05	3.1135	0.0015045	3.2094	0.0015509	483.2314046590255	41.57	0.37474	41.435	41.255	41.629	-0.13553					24	9	3	0	0	0	0.52765	1	3690	3690		85.161	13.865	1	1669800			80162	10885	55906	55999	88823	88823					-0.03749191592442003
TNNSSSISGV	10	Unmodified	_TNNSSSISGV_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.234375	2	483.230353	964.446153	-0.40867	-0.00019748	3.6852	0.0017808	3.2765	0.0015833	483.23175723555084	41.782	0.48586	41.552	41.352	41.838	-0.23026					27	12	4	0	0	0	0.61732	1	3712	3712		75.043	6.5586	1	1574900			80163	10885	55906	55999	88824	88824					-0.03749191592442003
TNPGAYTVQP	10	Unmodified	_TNPGAYTVQP_					0	0	0			REV__nc|ENSG00000170848|Q00889|PSG6	REV__nc|ENSG00000170848|Q00889|PSG6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3240356445312	2	524.258914	1046.50327	0.29268	0.00015344	-0.14894	-7.8084E-05	0.14374	7.5355E-05	524.2586892481247	50.899	1.007	50.623	50.035	51.042	-0.27643					64	26	4	0	0	0	0.03519	1	5105	5105		17.468	0	1	1281800	+		80164	36926	55907	56000	88825	88825					-0.018117243160759244
TNPIFPVG	8	Unmodified	_TNPIFPVG_					0	0	0		LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant;ENSG00000121931|ENST00000369763|LRIF1	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.21771240234375	2	422.731803	843.449054	-0.08439	-3.5674E-05	0.52161	0.0002205	0.43722	0.00018483	422.7314689325792	35.789	0.71703	35.576	35	35.717	-0.21246					27	18	2	0	0	0	0.027866	1	2743	2743		31.955	0	1	214310			80165	3897	55908	56001	88826	88826					0.02106728322996787
TNPIFPVG	8	Unmodified	_TNPIFPVG_					0	0	0		LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant;ENSG00000121931|ENST00000369763|LRIF1	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	422.731803	843.449054	-0.20601	-8.7087E-05	-3.3302	-0.0014078	-3.5362	-0.0014949	422.7306294699632	35.532	0.23561	35.317	35.1	35.336	-0.21555	-0.13204	-0.0027691	NaN	31.955	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53813			80166	3897	55908	56001							0.02106728322996787
TNPIFPVG	8	Unmodified	_TNPIFPVG_					0	0	0		LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant;ENSG00000121931|ENST00000369763|LRIF1	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	LRIF1|p.K605Rfs*17|1|0.03|ENSG00000121931|chr1:110949890-110949906|TTTGTAAGTACCACTCT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	422.731803	843.449054	0.20758	8.7752E-05	0.90061	0.00038071	1.1082	0.00046847	422.7314513205448	35.64	0.70737	35.454	35.18	35.888	-0.18675	0.0046905	0.00080788	NaN	31.955	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216300			80167	3897	55908	56001							0.02106728322996787
TNPSSLFKL	9	Unmodified	_TNPSSLFKL_					0	0	0			REV__ENST00000485311.1_1_3:45779316-45781222:+|nuORF	REV__ENST00000485311.1_1_3:45779316-45781222:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.7820739746094	2	503.782025	1005.5495	-0.81244	-0.00040929	0.32655	0.00016451	-0.4859	-0.00024479	503.7821389539086	47.443	1.3343	47.502	47.144	48.478	0.059097					119	38	5	0	0	0	0.74711	1	4754	4754		42.864	1.4377	1	17257000	+		80168	33559	55909	56002	88827	88827					0.04694340586001999
TNPTYLIKG	9	Unmodified	_TNPTYLIKG_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7820129394531	2	503.782025	1005.5495	-0.20843	-0.000105	-0.31641	-0.0001594	-0.52484	-0.00026441	503.7818292198866	47.659	1.3079	47.506	47.125	48.433	-0.15301					122	38	4	0	0	0	0.15366	2	4778	4778;4804		98.629	15.879	1	16032000	+		80169	27297	55910	56003	88828;88829	88828					0.04694340586001999
TNQDRKPPA	9	Unmodified	_TNQDRKPPA_					0	0	0			REV__ENSG00000173166|ENST00000319170|RAPH1	REV__ENSG00000173166|ENST00000319170|RAPH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3086547851562	2	513.76998	1025.52541	-0.061457	-3.1575E-05	0.57383	0.00029482	0.51237	0.00026324	514.2708006021229	54.505	0.31813	54.355	54.156	54.474	-0.15036					11	8	2	0	0	0	0.024381	1	5955	5955		37.159	8.9048	1	91320	+		80170	26747	55911	56004	88830	88830					0.013665001523349929
TNQDRKPPA	9	Unmodified	_TNQDRKPPA_					0	0	0			REV__ENSG00000173166|ENST00000319170|RAPH1	REV__ENSG00000173166|ENST00000319170|RAPH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.76998	1025.52541	-0.076496	-3.9301E-05	3.5853	0.001842	3.5088	0.0018027	513.77160681062	54.253	0.55374	54.008	53.891	54.445	-0.2453	-0.17341	0.001272	NaN	29.15	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172350	+		80171	26747	55911	56004							0.013665001523349929
TNQFRNIN	8	Unmodified	_TNQFRNIN_					0	0	0		ENST00000398334.5_2_X:14883659-14887094:-|nuORF	ENST00000398334.5_2_X:14883659-14887094:-|nuORF	ENST00000398334.5_2_X:14883659-14887094:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7666931152344	2	503.756872	1005.49919	0.55067	0.00027741	2.923	0.0014725	3.4737	0.0017499	503.75816626379367	58.793	0.65028	58.793	58.495	59.145	0					31	17	2	0	0	0	0.027866	1	6643	6643		15.642	0	1	492850			80172	13622	55912	56005	88831	88831					-0.003337690191415277
TNQFRNIN	8	Unmodified	_TNQFRNIN_					0	0	0		ENST00000398334.5_2_X:14883659-14887094:-|nuORF	ENST00000398334.5_2_X:14883659-14887094:-|nuORF	ENST00000398334.5_2_X:14883659-14887094:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7664489746094	2	503.756872	1005.49919	1.3387	0.00067438	2.6385	0.0013291	3.9772	0.0020035	503.75810644518566	58.988	0.5738	58.801	58.575	59.149	-0.18705					24	15	2	0	0	0	0.027866	1	6646	6646		37.159	9.2769	1	587760			80173	13622	55912	56005	88832	88832					-0.003337690191415277
TNRIPESGGD	10	Unmodified	_TNRIPESGGD_					0	0	0		ENSG00000137801|ENST00000260356|THBS1	ENSG00000137801|ENST00000260356|THBS1	ENSG00000137801|ENST00000260356|THBS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.3140258789062	2	523.249077	1044.4836	-0.28157	-0.00014733	3.9944	0.00209	3.7128	0.0019427	523.2509867949966	32.015	0.59499	31.857	31.609	32.204	-0.15772					30	13	3	0	0	0	0.03519	1	2183	2183		35.152	13.192	1	414870			80174	5154	55913	56006	88833	88833					-0.03686100326831365
TNRIYGNVGD	10	Unmodified	_TNRIYGNVGD_					0	0	0		ENSG00000121454|ENST00000263726|LHX4	ENSG00000121454|ENST00000263726|LHX4	ENSG00000121454|ENST00000263726|LHX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8299560546875	2	554.772719	1107.53089	-0.12078	-6.7007E-05	-3.8602	-0.0021415	-3.981	-0.0022086	555.2720661945106	87.17	0.75728	87.033	86.787	87.545	-0.13734					20	17	2	0	0	0	0.03519	1	10586	10586		46.457	17.307	1	89336			80175	3872	55914	56007	88834	88834					-0.018578210558416686
TNRKDVEQWFN	11	Unmodified	_TNRKDVEQWFN_					0	0	0		ENSG00000196859|ENST00000355612|KRT39;CON__Q6IFU6	ENSG00000196859|ENST00000355612|KRT39	ENSG00000196859|ENST00000355612|KRT39	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.290283203125	3	479.568752	1435.68443	-0.0237	-1.1366E-05	-0.25194	-0.00012082	-0.27564	-0.00013219	479.90294362532745	31.068	0.23935	30.915	30.806	31.045	-0.15231					8	5	2	0	0	0	0.024738	1	2020	2020		37.6	0	1	33780		+	80176	558	55915	56008	88835	88835					-0.015988310102102332
TNRLVLLGRNL	11	Unmodified	_TNRLVLLGRNL_					0	0	0		ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENSG00000136682|ENST00000259199|ZNG1B;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF	ENSG00000172785|ENST00000356521|ZNG1A	ENSG00000172785|ENST00000356521|ZNG1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.5973815917969	3	423.598094	1267.77245	-0.23744	-0.00010058	-0.67788	-0.00028715	-0.91532	-0.00038773	423.59771991939675	104.35	0.86096	104.35	103.98	104.84	0					52	20	4	0	0	0	1.0292	1	13389	13389		21.032	0	1	1020200			80177	8309	55916	56009	88836	88836					0.14927834371110293
TNRYVKAR	8	Unmodified	_TNRYVKAR_					0	0	0		ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.2971496582031	2	504.290882	1006.56721	-0.94501	-0.00047656	3.3203	0.0016744	2.3753	0.0011978	504.2924678795801	61.527	0.78341	61.349	60.712	61.495	-0.17781					29	18	3	0	0	0	0.027866	1	6911	6911		12.207	9.0476	1	644470			80178	4992	55917	56010	88837	88837					0.0641910063151272
TNRYVKAR	8	Unmodified	_TNRYVKAR_					0	0	0		ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.290882	1006.56721	-0.51929	-0.00026187	2.6574	0.0013401	2.1381	0.0010782	504.2920391020004	61.677	0.3718	61.419	61.133	61.505	-0.25725	0.0091455	0.00095662	NaN	12.207	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556270			80179	4992	55917	56010							0.0641910063151272
TNSADKGSKV	10	Unmodified	_TNSADKGSKV_					0	0	0		nc|ENSG00000138079|Q07837-4|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;SLC3A1|p.G637Sfs*18|1|0.08|ENSG00000138079|chr2:44320488-44320489|-/CTCTGGAAGGCCCACC|frameshift_variant;ENSG00000138079|ENST00000260649|SLC3A1	nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-4|SLC3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7798767089844	2	503.76182	1005.50909	0.047416	2.3886E-05	-1.4462	-0.00072853	-1.3988	-0.00070465	503.75952233095893	52.828	0.6589	52.92	52.638	53.297	0.091938					24	17	2	0	0	0	0.03519	1	5645	5645		54.722	11.858	1	83883			80180	5201	55918	56011	88838	88838					0.006553741955826808
TNSKKQLVSE	10	Unmodified	_TNSKKQLVSE_					0	0	0		ENSG00000216588|ENST00000402988|IGSF23	ENSG00000216588|ENST00000402988|IGSF23	ENSG00000216588|ENST00000402988|IGSF23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2962646484375	2	567.311677	1132.6088	0.22132	0.00012556	-3.1235	-0.001772	-2.9022	-0.0016465	567.8111903799088	21.023	0.43434	20.846	20.581	21.016	-0.17721					13	8	2	0	0	0	0.03519	1	641	641		25.574	0	1	21638			80181	10598	55919	56012	88839	88839					0.04780191809527423
TNSQVLKY	8	Unmodified	_TNSQVLKY_					0	0	0			REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7576904296875	2	476.758549	951.502546	0.43743	0.00020855	-1.8565	-0.00088511	-1.4191	-0.00067656	476.7577688912986	100.79	1.7036	100.66	100.4	102.11	-0.12569					69	44	2	0	0	0	1.0574	1	12548	12548		23.042	1.0826	1	198430	+		80182	20194	55920	56013	88840	88840					0.024854810348642786
TNSRALLPSL	10	Unmodified	_TNSRALLPSL_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.2385864257812	2	536.31148	1070.60841	-0.96837	-0.00051935	2.0044	0.001075	1.036	0.00055564	536.3121400389401	60.297	0.75019	60.121	59.885	60.635	-0.1761					25	18	2	0	0	0	0.03519	1	6773	6773		106.68	18.987	1	128310	+		80183	28374	55921	56014	88841	88841					0.07592816880332975
TNSRALLPSL	10	Unmodified	_TNSRALLPSL_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.238037109375	2	536.31148	1070.60841	-1.1589	-0.00062155	2.855	0.0015312	1.696	0.0009096	536.312262151693	60.422	0.68357	60.169	60.014	60.697	-0.25373					28	16	2	0	0	0	0.03519	1	6781	6781		101.25	24.406	1	109150	+		80184	28374	55921	56014	88842	88842					0.07592816880332975
TNSVPISKL	9	Unmodified	_TNSVPISKL_					0	0	0			REV__ENSG00000169876|ENST00000306151|MUC17	REV__ENSG00000169876|ENST00000306151|MUC17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7809143066406	2	479.782025	957.549496	-0.34739	-0.00016667	0.5241	0.00025145	0.17671	8.478E-05	479.78219276190885	46.843	0.52068	46.894	46.616	47.136	0.051899					31	13	3	0	0	0	0.062622	1	4615	4615		124.08	10.669	1	2948000	+		80185	26408	55922	56015	88843	88843					0.06902340586009359
TNSVWTEH	8	Unmodified	_TNSVWTEH_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.3160095214844	2	487.222331	972.430109	-0.83474	-0.0004067	1.1363	0.00055365	0.30159	0.00014694	487.22269132046154	39.223	0.42815	39.124	38.983	39.411	-0.098755					17	11	2	0	0	0	0.027866	1	3382	3382		21.96	0	1	139540			80186	4700	55923	56016	88844	88844					-0.05720853038712903
TNSYLRPK	8	Unmodified	_TNSYLRPK_					0	0	0			REV__AluSx_dup108495|chr19:47742279-47742570:-|1.1370174590336468|0.3451542978898808|1.72|520.0|7|2|sense	REV__AluSx_dup108495|chr19:47742279-47742570:-|1.1370174590336468|0.3451542978898808|1.72|520.0|7|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2869567871094	2	489.771991	977.529429	0.46576	0.00022811	-1.1017	-0.00053957	-0.63592	-0.00031146	489.77146709813803	63.305	0.96882	63.047	62.706	63.675	-0.25824					37	24	3	0	0	0	0.027866	1	7144	7144		45.952	0	1	267930	+		80187	19124	55924	56017	88845	88845					0.03976589646049433
TNTAIALSF	9	Unmodified	_TNTAIALSF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.7667236328125	2	469.2531	936.491647	-0.56011	-0.00026283	1.7164	0.00080543	1.1563	0.0005426	469.25336741580986	35.53	0.5785	35.53	35.27	35.849	0					29	14	3	0	0	0	0.024405	1	2732	2732		20.947	0	1	249270			80188	5381	55925	56018	88846	88846					0.020860786605680914
TNTATPGLPTT	11	Unmodified	_TNTATPGLPTT_					0	0	0			REV__nc|ENSG00000169894|Q02505-2|MUC3A	REV__nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.278564453125	2	537.277303	1072.54005	-1.7031	-0.00091504	4.145	0.002227	2.4419	0.001312	537.2795236073608	24.726	0.71023	24.679	24.398	25.108	-0.047146					37	15	4	0	0	0	1.0017	1	1102	1102		36.447	1.2947	1	787200	+		80189	26410	55926	56019	88847	88847					0.006685275098107013
TNTDKTESY	9	Unmodified	_TNTDKTESY_					0	0	0			REV__ENSG00000147852|ENST00000382100|VLDLR	REV__ENSG00000147852|ENST00000382100|VLDLR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3004150390625	2	529.735468	1057.45638	-1.0951	-0.00058011	2.0599	0.0010912	0.96477	0.00051107	529.7365108169704	38.576	0.49835	38.354	38.119	38.617	-0.22149					23	12	2	0	0	0	0.024319	1	3225	3225		39.253	19.256	1	495830	+		80190	24583	55927	56020	88848	88848					-0.07004628657887224
TNTLRILAL	9	Unmodified	_TNTLRILAL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.I757M|1|0.09|ENSG00000189091|chr16:70561767-70561767|C/G|missense_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.8181457519531	2	507.818941	1013.62333	-0.82266	-0.00041776	0.51522	0.00026164	-0.30744	-0.00015612	507.8191002311028	68.721	1.1105	68.459	68.142	69.252	-0.26165					66	26	4	0	0	0	0.016758	4	7937	7937;7949;7962;7974		153.04	59.84	1	2259600			80191	9787	55928	56021	88849;88850;88851;88852	88849					0.1170630874833023
TNTLRILAL	9	Unmodified	_TNTLRILAL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.I757M|1|0.09|ENSG00000189091|chr16:70561767-70561767|C/G|missense_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.8184509277344	2	507.818941	1013.62333	0.21121	0.00010726	-0.56256	-0.00028568	-0.35134	-0.00017842	507.81857183341236	68.625	1.2959	68.383	67.868	69.164	-0.24277					71	31	4	0	0	0	0.12914	3	7937	7937;7950;7968		104.06	21.816	1	2559600			80192	9787	55928	56021	88853;88854;88855	88853					0.1170630874833023
TNTLRILAL	9	Unmodified	_TNTLRILAL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.I757M|1|0.09|ENSG00000189091|chr16:70561767-70561767|C/G|missense_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.81884765625	2	507.818941	1013.62333	0.15491	7.8667E-05	-0.44062	-0.00022375	-0.28571	-0.00014509	507.8186185316053	68.608	0.9762	68.378	68.077	69.054	-0.23048					63	23	4	0	0	0	0.041068	3	7932	7920;7932;7945		132.76	50.517	1	2545600			80193	9787	55928	56021	88856;88857;88858	88857					0.1170630874833023
TNTLRILAL	9	Unmodified	_TNTLRILAL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.I757M|1|0.09|ENSG00000189091|chr16:70561767-70561767|C/G|missense_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.818941	1013.62333	0.070838	3.5973E-05	-2.1826	-0.0011084	-2.1118	-0.0010724	507.8173268607618	68.461	0.23804	68.168	68.013	68.251	-0.29267	-0.17883	-0.0020856	NaN	153.04	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81364			80194	9787	55928	56021							0.1170630874833023
TNVAVHLATL	10	Unmodified	_TNVAVHLATL_					0	0	0			REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2869873046875	2	519.800749	1037.58694	-1.2791	-0.0006649	0.71593	0.00037214	-0.56321	-0.00029276	519.8004706860138	36.058	0.20533	36.015	35.896	36.101	-0.042454					8	5	2	0	0	0	0.03519	1	2799	2799		45.972	15.469	1	204450	+		80195	20400	55929	56022	88859	88859					0.06965431851631365
TNVCHGECSS	10	Unmodified	_TNVCHGECSS_					0	0	0			REV__ENSG00000167992|ENST00000335613|VWCE	REV__ENSG00000167992|ENST00000335613|VWCE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7048950195312	2	518.694766	1035.37498	-0.061859	-3.2086E-05	-2.9373	-0.0015235	-2.9991	-0.0015556	518.6931596674417	34.119	0.81935	33.912	33.587	34.406	-0.20696					50	20	3	0	0	0	0.03519	1	2479	2479		42.864	5.7052	1	2297600	+		80196	26210	55930	56023	88860	88860					-0.14129350893131232
TNVEALIAR	9	Unmodified	_TNVEALIAR_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1;RAB3GAP1|p.A846S|1|0.09|ENSG00000115839|chr2:135163031-135163031|G/T|missense_variant	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.30584716796875	2	493.785099	985.555644	-0.64646	-0.00031921	-2.4713	-0.0012203	-3.1178	-0.0015395	493.7839604105423	85.262	0.62353	85.288	84.912	85.536	0.025536					21	14	2	0	0	0	0.024319	1	10572	10572		47.657	0	1	246930			80197	3494	55931	56024	88861	88861					0.06228858817530636
TNVEVQQCI	9	Unmodified	_TNVEVQQCI_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.2745361328125	2	517.252774	1032.491	-0.59981	-0.00031025	1.947	0.0010071	1.3472	0.00069684	517.2525329415548	45.38	0.57343	45.231	44.974	45.547	-0.1488					21	16	2	0	0	0	0.022587	1	4354	4354		96.19	13.44	1	276080	+		80198	20656	55932	56025	88862	88862					-0.023950840507950488
TNVGGQRA	8	Unmodified	_TNVGGQRA_					0	0	0			REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.7120361328125	2	401.711934	801.409314	0.8179	0.00032856	-0.11777	-4.7311E-05	0.70013	0.00028125	401.71175086667296	26.097	1.2694	25.929	25.662	26.931	-0.16816					77	33	3	0	0	0	1.0516	1	1345	1345		29.15	2.1022	1	3586700	+		80199	24662	55933	56026	88863	88863					0.0006660137228209351
TNVGGQRA	8	Unmodified	_TNVGGQRA_					0	0	0			REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	401.711934	801.409314	-0.029832	-1.1984E-05	0.65657	0.00026375	0.62673	0.00025177	401.71206225370065	26.298	1.2387	26.062	25.762	27.001	-0.23603	0.075335	-0.00013086	NaN	29.15	73	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2701800	+		80200	24662	55933	56026							0.0006660137228209351
TNVGGQRA	8	Unmodified	_TNVGGQRA_					0	0	0			REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	401.711934	801.409314	0.8179	0.00032856	-0.11777	-4.7311E-05	0.70013	0.00028125	401.71175086667296	26.097	1.2694	25.929	25.662	26.931	-0.16816	-0.057299	-0.00075298	NaN	29.15	77	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3586700	+		80201	24662	55933	56026							0.0006660137228209351
TNVGGQRA	8	Unmodified	_TNVGGQRA_					0	0	0			REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	REV__ENST00000460787.1_1_11:75133626-75136632:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	401.711934	801.409314	-1.3297	-0.00053417	1.8586	0.00074663	0.5289	0.00021247	401.7125362926177	26.132	1.5473	25.968	25.631	27.178	-0.16331	-0.018036	0.00083491	NaN	29.15	89	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3952700	+		80202	24662	55933	56026							0.0006660137228209351
TNVTTAVDIY	10	Unmodified	_TNVTTAVDIY_					0	0	0		ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENST00000460499.5_1_2:27659579-27664676:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2418212890625	2	548.779679	1095.5448	-0.07285	-3.9978E-05	-4.0644	-0.0022305	-4.1372	-0.0022704	548.7776278339943	49.832	0.55532	49.552	49.32	49.875	-0.27977					20	14	2	0	0	0	0.03519	1	5005	5005		56.434	25.93	1	324720			80203	3419	55934	56027	88864	88864					0.0008541165257156536
TNVWYVIAQ	9	Unmodified	_TNVWYVIAQ_					0	0	0		ENST00000537589.1_2_2:65301228-65301667:+|nuORF	ENST00000537589.1_2_2:65301228-65301667:+|nuORF	ENST00000537589.1_2_2:65301228-65301667:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.3043212890625	2	547.287474	1092.5604	-1.6324	-0.00089338	-3.2924	-0.0018019	-4.9248	-0.0026953	547.2865034002303	80.727	0.39542	80.751	80.573	80.968	0.023911					15	9	2	0	0	0	0.02435	1	9942	9942		26.693	1.1189	1	74855			80204	16376	55935	56028	88865	88865					0.01781742960270094
TNWIEYMF	8	Unmodified	_TNWIEYMF_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF;NPC1-ANKRD29|1|fusion	ENSG00000141458|ENST00000269228|NPC1;NPC1-ANKRD29|1|fusion	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.316650390625	2	552.24696	1102.47937	-1.0307	-0.0005692	-3.4931	-0.001929	-4.5238	-0.0024982	552.2448366502808	43.97	1.1263	43.751	42.88	44.006	-0.21938					78	30	3	0	0	0	0.027866	1	4075	4075		55.504	16.698	1	1175400			80205	5495;18886	55936	56029	88866	88866					-0.06777281074118946
TNWSTNKLL	9	Unmodified	_TNWSTNKLL_					0	0	0			REV__ENST00000380172.8_1_9:21864290-21864335:+|nuORF	REV__ENST00000380172.8_1_9:21864290-21864335:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.805419921875	2	538.790381	1075.56621	-0.73483	-0.00039592	0.24401	0.00013147	-0.49082	-0.00026445	538.7906256972364	37.153	0.45616	37.185	36.957	37.413	0.032269					24	11	3	0	0	0	0.024397	1	2953	2953		39.253	0	1	104680	+		80206	31467	55937	56030	88867	88867					0.031448414719761786
TNYAAAHCTGL	11	Unmodified	_TNYAAAHCTGL_					0	0	0		ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENST00000434805.1_1_1:35816564-35817152:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	561.2548217773438	2	561.255848	1120.49714	-0.50714	-0.00028464	-1.48	-0.00083065	-1.9871	-0.0011153	561.2549183716083	64.295	1.0019	64.032	63.684	64.686	-0.2626					70	26	5	0	0	0	0.90725	1	7550	7550		51.193	0	1	3631200			80207	14252	55938	56031	88868	88868					-0.05828565819297182
TNYFGCYIP	9	Unmodified	_TNYFGCYIP_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.2440185546875	2	539.239135	1076.46372	-1.1962	-0.00064504	0.82239	0.00044346	-0.37381	-0.00020158	539.238875760926	55.803	0.58664	55.646	55.386	55.972	-0.15655					24	15	2	0	0	0	0.023596	1	5990	5990		53.351	2.1588	1	301210	+		80208	27713	55939	56032	88869	88869					-0.0714556759116931
TPAAAPAIR	9	Unmodified	_TPAAAPAIR_					0	0	0		nc|ENSG00000167644|Q9GZP8-2|IMUP	nc|ENSG00000167644|Q9GZP8-2|IMUP	nc|ENSG00000167644|Q9GZP8-2|IMUP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2553405761719	2	434.255977	866.497401	-0.069794	-3.0309E-05	-2.5192	-0.001094	-2.589	-0.0011243	434.2534449509598	103.37	0.29099	103.25	103	103.29	-0.12783					10	6	2	0	0	0	0.024381	1	12866	12866		29.15	4.9468	1	315820			80209	18481	55940	56033	88870	88870					0.05881221962897598
TPAAAPAIR	9	Unmodified	_TPAAAPAIR_					0	0	0		nc|ENSG00000167644|Q9GZP8-2|IMUP	nc|ENSG00000167644|Q9GZP8-2|IMUP	nc|ENSG00000167644|Q9GZP8-2|IMUP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	434.255977	866.497401	0.54242	0.00023555	1.5853	0.00068844	2.1278	0.00092399	434.25640825541814	103.26	0.54929	103.26	103.14	103.69	-0.0046005	0.0241	0.0034611	NaN	29.15	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351170			80210	18481	55940	56033							0.05881221962897598
TPAALNRAR	9	Unmodified	_TPAALNRAR_					0	0	0		ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENST00000488160.5_1_1:113239361-113241636:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2832336425781	2	485.283057	968.551562	-0.82589	-0.00040079	0.18452	8.9543E-05	-0.64138	-0.00031125	485.28324341775743	21.56	1.7451	21.56	21.195	22.94	0					108	36	6	0	0	0	0.59099	1	659	659		53.351	3.3269	1	9057800			80211	15386	55941	56034	88871	88871					0.06602814114467037
TPAALNRAR	9	Unmodified	_TPAALNRAR_					0	0	0		ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENST00000488160.5_1_1:113239361-113241636:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2829895019531	2	485.283057	968.551562	-0.47049	-0.00022832	-0.20513	-9.9547E-05	-0.67563	-0.00032787	485.28305550469815	21.616	1.7483	21.526	21.158	22.906	-0.090094					100	36	5	0	0	0	0.29158	1	679	679		76.774	25.439	1	9118900			80212	15386	55941	56034	88872	88872					0.06602814114467037
TPAALNRAR	9	Unmodified	_TPAALNRAR_					0	0	0		ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENST00000488160.5_1_1:113239361-113241636:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2829284667969	2	485.283057	968.551562	-0.77196	-0.00037462	0.12227	5.9337E-05	-0.64969	-0.00031528	485.2831968858641	21.498	1.9183	21.569	21.057	22.975	0.071487					104	39	5	0	0	0	0.62163	1	628	628		51.335	3.4199	1	9782400			80213	15386	55941	56034	88873	88873					0.06602814114467037
TPAATLAARA	10	Unmodified	_TPAATLAARA_					0	0	0			REV__ENST00000315215.11_1_8:37654508-37654700:+|nuORF	REV__ENST00000315215.11_1_8:37654508-37654700:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7821044921875	2	471.771991	941.529429	0.27135	0.00012802	2.1309	0.0010053	2.4023	0.0011333	471.77271667827716	28.942	0.58506	29.023	28.945	29.53	0.080811					19	14	2	0	0	0	0.03519	1	1722	1722		29.17	0	1	461830	+		80214	30257	55942	56035	88874	88874					0.056325896460293734
TPAFHFDI	8	Unmodified	_TPAFHFDI_					0	0	0		CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant;ENSG00000171954|ENST00000269703|CYP4F22	CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant	CYP4F22|p.R283Gfs*87|1|0.37|ENSG00000171954|chr19:15540623-15540623|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.76385498046875	2	474.23471	946.454868	-0.3475	-0.00016479	-3.2386	-0.0015358	-3.586	-0.0017006	474.2331835979043	34.663	0.83151	34.713	34.441	35.273	0.050255					26	21	2	0	0	0	0.027866	1	2586	2586		60.294	6.9425	1	110380			80215	616	55944	56036	88875	88875					-0.020501731653439492
TPAGQRRAL	9	Unmodified	_TPAGQRRAL_					0	0	0		ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2833557128906	2	485.283057	968.551562	-0.77196	-0.00037462	0.12227	5.9337E-05	-0.64969	-0.00031528	485.2831968858641	21.498	1.9183	21.569	21.057	22.975	0.071487					104	39	5	0	0	0	0.55828	1	608	608		55.504	11.387	1	9782400			80216	11963	55945	56037	88876	88876					0.06602814114467037
TPAGVKYIKV	10	Unmodified	_TPAGVKYIKV_					0	0	0			REV__nc|ENSG00000172409|Q92989-2|CLP1	REV__nc|ENSG00000172409|Q92989-2|CLP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3267211914062	2	538.329142	1074.64373	0.47679	0.00025667	-4.3339	-0.002333	-3.8571	-0.0020764	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	1.1286	1	12449	12449		25.574	0	1	21461000	+		80217	26669	55946	56038	88877	88877					0.10939479408125408
TPAIKRSIL	9	Unmodified	_TPAIKRSIL_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-8|MYB;ENST00000533837.5_1_6:135518016-135539115:+|nuORF;ENST00000529262.5_1_6:135518089-135539115:+|nuORF	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.8214416503906	2	499.821484	997.628415	0.24232	0.00012112	-0.34481	-0.00017234	-0.10249	-5.1229E-05	499.82116913805385	39.439	1.0889	39.439	38.935	40.024	0					94	30	4	0	0	0	0.14024	2	3381	3381;3407		101.6	16.685	1	4547600			80218	3688	55947	56039	88878;88879	88878					0.1295061261095043
TPAIKRSIL	9	Unmodified	_TPAIKRSIL_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-8|MYB;ENST00000533837.5_1_6:135518016-135539115:+|nuORF;ENST00000529262.5_1_6:135518089-135539115:+|nuORF	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.8213806152344	2	499.821484	997.628415	-0.93232	-0.00046599	0.83558	0.00041764	-0.096738	-4.8352E-05	499.8217568054186	39.514	1.3786	39.415	38.843	40.222	-0.098755					108	37	4	0	0	0	0.1158	3	3376	3376;3387;3399		107.01	11.192	1	4273500			80219	3688	55947	56039	88880;88881;88882	88880					0.1295061261095043
TPAIKRSIL	9	Unmodified	_TPAIKRSIL_					0	0	0		nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-8|MYB;ENST00000533837.5_1_6:135518016-135539115:+|nuORF;ENST00000529262.5_1_6:135518089-135539115:+|nuORF	nc|ENSG00000118513|P10242-10|MYB	nc|ENSG00000118513|P10242-10|MYB	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.8209533691406	2	499.821484	997.628415	-0.73631	-0.00036803	0.70168	0.00035071	-0.034639	-1.7314E-05	499.8216892748856	39.698	1.179	39.722	39.17	40.349	0.023727					91	32	4	0	0	0	0.16638	3	3379	3366;3379;3392		95.815	10.654	1	4486600			80220	3688	55947	56039	88883;88884;88885	88884					0.1295061261095043
TPAKRVRPD	9	Unmodified	_TPAKRVRPD_					0	0	0			REV__ENSG00000130749|ENST00000253048|ZC3H4	REV__ENSG00000130749|ENST00000253048|ZC3H4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.8213500976562	2	520.30399	1038.59343	0.439	0.00022841	2.2505	0.0011709	2.6895	0.0013993	520.3050518275367	81.761	0.46619	81.567	81.377	81.844	-0.19334					15	10	3	0	0	0	0.024381	1	9834	9834		37.159	0	1	80670	+		80221	23148	55948	56040	88886	88886					0.07567369802995927
TPAKSLRLL	9	Unmodified	_TPAKSLRLL_					0	0	0		ENST00000538947.5_1_20:56195285-56195528:-|nuORF;ENST00000546110.5_1_20:56190212-56195528:-|nuORF;ENST00000432548.2_1_20:56190212-56195528:-|nuORF	ENST00000538947.5_1_20:56195285-56195528:-|nuORF	ENST00000538947.5_1_20:56195285-56195528:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.82110595703125	2	499.821484	997.628415	0.24232	0.00012112	-0.34481	-0.00017234	-0.10249	-5.1229E-05	499.82116913805385	39.439	1.0889	39.439	38.935	40.024	0					94	30	4	0	0	0	0.094442	1	3391	3391		112.41	13.782	1	4547600			80222	14207	55949	56041	88887	88887					0.1295061261095043
TPALFSFM	8	Oxidation (M)	_TPALFSFM(Oxidation (M))_		TPALFSFM(1)		TPALFSFM(60)	0	0	1		ENSG00000176787|ENST00000321522|OR52E2	ENSG00000176787|ENST00000321522|OR52E2	ENSG00000176787|ENST00000321522|OR52E2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.23175048828125	2	465.225497	928.43644	0.1348	6.271E-05	4.4096	0.0020514	4.5444	0.0021142	465.22747441787794	36.872	0.65884	36.809	36.432	37.091	-0.063385					28	16	2	0	0	0	0.78609	1	2951	2951		60.294	10.852	1	1637600			80223	8670	55950	56042	88888	88888		363			-0.030640511315368713
TPALIPVDP	9	Unmodified	_TPALIPVDP_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.279296875	2	461.765843	921.517133	0.46486	0.00021466	1.2708	0.00058682	1.7357	0.00080148	461.76606923982047	43.851	1.22	43.882	43.046	44.266	0.030827					68	33	3	0	0	0	0.024323	1	3943	3943		44.117	0	1	885880			80224	8647	55951	56043	88889	88889					0.05323553182995511
TPALQAPPA	9	Unmodified	_TPALQAPPA_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.28271484375	2	433.242535	864.470518	-0.49744	-0.00021551	0.66607	0.00028857	0.16863	7.3058E-05	433.2426928205853	51.647	0.75868	51.499	51.157	51.915	-0.14735					45	21	3	0	0	0	0.024418	1	5531	5531		23.523	0	1	1812200	+		80225	21832	55952	56044	88890	88890					0.03286113351691711
TPALREALTK	10	Unmodified	_TPALREALTK_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;ENSG00000277149|ENST00000620995|TYW1B;nc|ENSG00000198874|Q9NV66-2|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.7743530273438	2	550.327131	1098.63971	-1.2904	-0.00071015	-0.036072	-1.9851E-05	-1.3265	-0.00073	550.3268502716016	43.979	0.51388	43.979	43.8	44.314	0					24	14	3	0	0	0	0.03519	1	4133	4133		21.686	5.2126	1	393660			80226	10233	55953	56045	88891	88891					0.09433389914397594
TPALREATA	9	Unmodified	_TPALREATA_					0	0	0		ENST00000453904.2_1_2:211018217-211034955:-|nuORF;nc|ENSG00000144445|A0AUZ9-4|KANSL1L;nc|ENSG00000144445|A0AUZ9-3|KANSL1L;nc|ENSG00000144445|A0AUZ9-2|KANSL1L;ENSG00000144445|ENST00000281772|KANSL1L	ENST00000453904.2_1_2:211018217-211034955:-|nuORF	ENST00000453904.2_1_2:211018217-211034955:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.255859375	2	465.256174	928.497795	0.70346	0.00032729	-1.6125	-0.00075021	-0.90901	-0.00042292	465.2551344576565	36.946	1.2263	36.946	36.37	37.596	0					68	32	5	0	0	0	0.35646	1	2972	2972		68.787	10.005	1	2678200			80227	5739	55954	56046	88892	88892					0.030685968920806772
TPALREATA	9	Unmodified	_TPALREATA_					0	0	0		ENST00000453904.2_1_2:211018217-211034955:-|nuORF;nc|ENSG00000144445|A0AUZ9-4|KANSL1L;nc|ENSG00000144445|A0AUZ9-3|KANSL1L;nc|ENSG00000144445|A0AUZ9-2|KANSL1L;ENSG00000144445|ENST00000281772|KANSL1L	ENST00000453904.2_1_2:211018217-211034955:-|nuORF	ENST00000453904.2_1_2:211018217-211034955:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2555847167969	2	465.256174	928.497795	0.026164	1.2173E-05	-0.61468	-0.00028598	-0.58851	-0.00027381	465.2557496140408	36.779	0.98215	36.716	36.47	37.452	-0.063389					62	25	6	0	0	0	0.67687	1	2932	2932		47.657	3.2801	1	2689100			80228	5739	55954	56046	88893	88893					0.030685968920806772
TPALSSEN	8	Unmodified	_TPALSSEN_					0	0	0		nc|ENSG00000169550|Q8N387-2|MUC15;nc|ENSG00000169550|Q8N387|MUC15;ENSG00000169550|ENST00000529533|MUC15	nc|ENSG00000169550|Q8N387-2|MUC15	nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.2468566894531	2	409.698158	817.381762	1.0999	0.00045065	-0.78474	-0.00032151	0.31521	0.00012914	409.6977023527234	37.466	0.57405	37.466	37.195	37.769	0					39	15	3	0	0	0	0.027866	1	3109	3109		37.159	27.976	1	1219100			80229	7947	55955	56047	88894	88894					-0.03423346678619055
TPAPARSQL	9	Unmodified	_TPAPARSQL_					0	0	0		ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.7642517089844	2	470.764166	939.513779	0.018021	8.4836E-06	0.26212	0.0001234	0.28014	0.00013188	470.76416663618085	31.849	0.70992	31.849	31.63	32.34	0					45	17	3	0	0	0	0.22379	2	2168	2156;2168		85.862	32.51	1	2225300			80230	1269	55956	56048	88895;88896	88896					0.04160303128992382
TPAPARSQL	9	Unmodified	_TPAPARSQL_					0	0	0		ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.7644348144531	2	470.764166	939.513779	0.038722	1.8229E-05	0.20104	9.4642E-05	0.23976	0.00011287	470.7641538345553	31.747	0.79337	31.758	31.545	32.338	0.011797					41	19	3	0	0	0	0.30449	1	2141	2141		75.043	29.071	1	2276700			80231	1269	55956	56048	88897	88897					0.04160303128992382
TPAPARSQL	9	Unmodified	_TPAPARSQL_					0	0	0		ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	ENSG00000064195|ENST00000434704|DLX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.7641296386719	2	470.764166	939.513779	0.20186	9.5028E-05	0.013107	6.1702E-06	0.21497	0.0001012	470.76404395113553	31.516	0.68431	31.585	31.366	32.051	0.068962					41	16	3	0	0	0	0.10464	2	2065	2054;2065		109.48	34.435	1	2261300			80232	1269	55956	56048	88898;88899	88899					0.04160303128992382
TPAPASCSQEL	11	Unmodified	_TPAPASCSQEL_					0	0	0		ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.252197265625	2	552.255514	1102.49647	-0.19964	-0.00011025	-2.1795	-0.0012036	-2.3791	-0.0013139	552.2541224254933	110.25	0.94171	110.26	110.07	111.01	0.005928					52	29	2	0	0	0	1.0718	1	13907	13907		19.104	2.3986	1	48580			80233	3715	55957	56049	88900	88900					-0.05067405258978397
TPAPPNAAPAP	11	Unmodified	_TPAPPNAAPAP_					0	0	0			REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2906188964844	2	502.263999	1002.51345	-0.76605	-0.00038476	0.61384	0.00030831	-0.15221	-7.645E-05	502.7648726414	86.194	0.43248	86.218	85.987	86.419	0.023666					14	9	2	0	0	0	0.024756	1	10727	10727		29.17	1.2878	1	35786	+		80234	22975	55958	56050	88901	88901					0.012288834091236822
TPAPPTHAL	9	Unmodified	_TPAPPTHAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	452.7479248046875	2	452.747985	903.481417	0.61972	0.00028058	-0.36977	-0.00016741	0.24995	0.00011316	452.74774836047266	39.568	1.5809	39.568	38.97	40.551	0					98	44	4	0	0	0	0.18915	4	3393	3393;3405;3417;3430		90.777	42.861	1	5667000			80235	7453	55959	56051	88902;88903;88904;88905	88902					0.025815157259899024
TPAPPTHAL	9	Unmodified	_TPAPPTHAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.7482604980469	2	452.747985	903.481417	-0.75026	-0.00033968	1.0991	0.0004976	0.3488	0.00015792	452.7484180859108	39.648	1.9418	39.536	38.867	40.808	-0.11223					108	53	4	0	0	0	0.11848	4	3407	3395;3407;3418;3430		106.42	40.612	1	5156500			80236	7453	55959	56051	88906;88907;88908;88909	88907					0.025815157259899024
TPAPPTHAL	9	Unmodified	_TPAPPTHAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.7481384277344	2	452.747985	903.481417	-0.65347	-0.00029586	0.97572	0.00044176	0.32225	0.0001459	452.7483606814775	39.801	1.2531	39.825	39.135	40.388	0.023727					95	34	5	0	0	0	0.08613	3	3402	3385;3402;3414		115.46	53.563	1	5715600			80237	7453	55959	56051	88910;88911;88912	88911					0.025815157259899024
TPAPRIPLG	9	Unmodified	_TPAPRIPLG_					0	0	0		ENST00000217159.5_1_20:61273824-61287749:+|nuORF	ENST00000217159.5_1_20:61273824-61287749:+|nuORF	ENST00000217159.5_1_20:61273824-61287749:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2795104980469	2	461.279452	920.544351	0.11547	5.3265E-05	-0.27145	-0.00012521	-0.15598	-7.1949E-05	461.2792388352515	42.777	0.50159	42.638	42.345	42.846	-0.13929					36	13	3	0	0	0	0.64155	1	3938	3938		50.025	0.58299	1	7065800			80238	11163	55960	56052	88913	88913					0.08090081514058056
TPAPRPAVL	9	Unmodified	_TPAPRPAVL_					0	0	0		ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.279541015625	2	461.279452	920.544351	-0.17079	-7.8781E-05	0.32239	0.00014871	0.15161	6.9933E-05	461.2793790822315	43.157	0.94205	43.018	42.809	43.751	-0.13929					50	25	3	0	0	0	0.2508	2	4003	3994;4003		82.241	8.2658	1	4611000			80239	11504	55961	56053	88914;88915	88915					0.08090081514046688
TPAPSKTKFL	10	Unmodified	_TPAPSKTKFL_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3167114257812	2	545.318774	1088.623	-0.49641	-0.0002707	-2.8445	-0.0015511	-3.3409	-0.0018218	545.3167995568245	101.47	1.1348	101.46	101.15	102.28	-0.0054474					62	25	4	0	0	0	1.1088	1	12917	12917		31.53	1.2121	1	1300000			80240	9461	55962	56054	88916	88916					0.08222889028479585
TPAPTSSGLW	10	Unmodified	_TPAPTSSGLW_					0	0	0		ENST00000485245.2_1_2:98373564-98375685:-|nuORF	ENST00000485245.2_1_2:98373564-98375685:-|nuORF	ENST00000485245.2_1_2:98373564-98375685:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2791748046875	2	508.756007	1015.49746	-0.28802	-0.00014653	-3.0914	-0.0015728	-3.3794	-0.0017193	509.2536958374612	55.59	0.21532	55.374	55.27	55.485	-0.21607					6	5	2	0	0	0	0.03519	1	5965	5965		45.952	3.5558	1	104090			80241	15323	55963	56055	88917	88917					-0.00966822827751912
TPASAGHVW	9	Unmodified	_TPASAGHVW_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2301025390625	2	463.229959	924.445365	-0.028056	-1.2997E-05	0.086752	4.0186E-05	0.058695	2.7189E-05	463.2298735237502	39.302	1.1308	39.302	39.006	40.137	0					75	31	4	0	0	0	0.021668	3	3364	3353;3364;3376		148.21	60.51	1	6733900			80242	4102	55964	56056	88918;88919;88920	88919					-0.019879414508636728
TPASAGHVW	9	Unmodified	_TPASAGHVW_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.23016357421875	2	463.229959	924.445365	-0.72222	-0.00033455	0.74039	0.00034297	0.018168	8.416E-06	463.230180988264	39.279	1.2256	39.18	38.843	40.069	-0.098751					88	33	4	0	0	0	0.028181	4	3334	3334;3344;3357;3370		143.02	57.66	1	5967600			80243	4102	55964	56056	88921;88922;88923;88924	88921					-0.019879414508636728
TPASAGHVW	9	Unmodified	_TPASAGHVW_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.22991943359375	2	463.229959	924.445365	-0.24546	-0.00011371	0.2742	0.00012702	0.028739	1.3313E-05	463.22997146988797	39.439	1.2146	39.462	39.135	40.349	0.023727					82	33	4	0	0	0	0.013018	3	3318	3318;3329;3342		173.85	91.544	1	5408700			80244	4102	55964	56056	88925;88926;88927	88925					-0.019879414508636728
TPASSRAQTL	10	Unmodified	_TPASSRAQTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2772216796875	2	516.277638	1030.54072	-1.2087	-0.00062402	1.3238	0.00068343	0.11507	5.941E-05	516.2776840555384	28.568	1.1115	28.568	28.074	29.186	0					56	26	4	0	0	0	0.047364	1	1671	1671		148.69	33.196	1	1525700			80245	3431	55965	56057	88928	88928					0.02667366949526695
TPASSRAQTL	10	Unmodified	_TPASSRAQTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.27734375	2	516.277638	1030.54072	-0.58888	-0.00030403	0.3098	0.00015995	-0.27908	-0.00014408	516.2770760998294	28.533	0.67768	28.529	28.242	28.92	-0.0042019					41	15	3	0	0	0	0.047364	2	1659	1649;1659		148.69	32.57	1	1499900			80246	3431	55965	56057	88929;88930	88930					0.02667366949526695
TPASSRAQTL	10	Unmodified	_TPASSRAQTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.27734375	2	516.277638	1030.54072	-0.75219	-0.00038834	1.0393	0.00053658	0.28713	0.00014824	516.2776468734718	28.204	0.79177	28.284	27.992	28.784	0.080811					44	18	4	0	0	0	0.22838	2	1568	1568;1579		117.53	26.925	1	1836400			80247	3431	55965	56057	88931;88932	88931					0.02667366949526695
TPASSRKNL	9	Unmodified	_TPASSRKNL_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.27490234375	2	487.274898	972.535243	1.2192	0.00059411	-1.4751	-0.00071877	-0.25583	-0.00012466	487.2741571918297	19.094	0.63802	19.094	18.873	19.511	0					30	12	4	0	0	0	0.071379	2	361	361;377		120.87	30.092	1	1246700			80248	7612	55966	56058	88933;88934	88933					0.047876881577167296
TPASSRKNL	9	Unmodified	_TPASSRKNL_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.2747497558594	2	487.274898	972.535243	-0.13582	-6.6183E-05	0.03165	1.5422E-05	-0.10417	-5.076E-05	487.27478812164793	19.294	0.49317	19.175	18.953	19.446	-0.11872					19	9	3	0	0	0	0.12914	1	380	380		104.06	18.697	1	483470			80249	7612	55966	56058	88935	88935					0.047876881577167296
TPATPPVYGL	10	Unmodified	_TPATPPVYGL_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2791748046875	2	508.276575	1014.5386	-0.30479	-0.00015492	0.352	0.00017891	0.047209	2.3995E-05	508.2766538931545	55.371	0.9382	55.141	54.855	55.794	-0.23087					60	26	3	0	0	0	0.57825	1	5965	5965		79.451	1.1872	1	7001600	+		80250	27306	55967	56059	88936	88936					0.03190938211707817
TPAVGRLEV	9	Unmodified	_TPAVGRLEV_					0	0	0		ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.27459716796875	2	471.274367	940.53418	0.91014	0.00042892	-1.2802	-0.00060333	-0.37007	-0.0001744	471.27367753917747	49.303	0.98122	49.303	49.005	49.986	0					65	26	4	0	0	0	0.087669	3	5079	5079;5089;5103		114.89	52.787	1	7067500			80251	4818	55968	56060	88937;88938;88939	88937					0.061534737887996016
TPAVGRLEV	9	Unmodified	_TPAVGRLEV_					0	0	0		ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2742919921875	2	471.274367	940.53418	0.28498	0.0001343	-0.6769	-0.000319	-0.39192	-0.0001847	471.2739653978459	49.511	1.0827	49.36	49.078	50.16	-0.1512					67	29	4	0	0	0	0.056725	4	5095	5083;5095;5108;5122		126.24	33.047	1	7053600			80252	4818	55968	56060	88940;88941;88942;88943	88941					0.061534737887996016
TPAVGRLEV	9	Unmodified	_TPAVGRLEV_					0	0	0		ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.27447509765625	2	471.274367	940.53418	-0.9513	-0.00044832	0.69073	0.00032552	-0.26057	-0.0001228	471.2745966526108	49.234	0.92554	49.308	48.987	49.912	0.074196					57	24	4	0	0	0	0.034407	4	5002	4992;5002;5015;5030		138.06	49.42	1	7564200			80253	4818	55968	56060	88944;88945;88946;88947	88945					0.061534737887996016
TPAVIPILVI	10	Unmodified	_TPAVIPILVI_					0	0	0		MGAT1|p.A102T|1|0.17|ENSG00000131446|chr5:180792668-180792668|C/T|missense_variant	MGAT1|p.A102T|1|0.17|ENSG00000131446|chr5:180792668-180792668|C/T|missense_variant	MGAT1|p.A102T|1|0.17|ENSG00000131446|chr5:180792668-180792668|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7583618164062	2	518.344261	1034.67397	0.47575	0.0002466	2.1016	0.0010894	2.5774	0.001336	518.345235447688	59.622	0.76259	59.425	58.888	59.651	-0.19742					28	18	2	0	0	0	0.03519	1	6621	6621		5.9211	2.5111	1	131660			80254	17977	55969	56061	88948	88948					0.15801838073343788
TPAVLGHIN	9	Unmodified	_TPAVLGHIN_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.279296875	2	461.261259	920.507966	0.86955	0.00040109	0.75024	0.00034606	1.6198	0.00074715	461.26117302403634	43.033	0.21455	43.064	42.939	43.153	0.030827					6	5	2	0	0	0	0.023007	1	3943	3943		76.774	5.4784	1	63908	+		80255	25129	55970	56062	88949	88949					0.0445320461733445
TPCAGGLDRR	10	Unmodified	_TPCAGGLDRR_					0	0	0			REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3281860351562	2	523.264007	1044.51346	-0.10609	-5.5515E-05	-4.2516	-0.0022247	-4.3577	-0.0022802	523.2617050938125	106.45	0.65974	106.45	106.11	106.77	-0.0013123					50	21	3	0	0	0	0.03519	1	13600	13600		25.574	5.5773	1	1208700	+		80256	31221	55971	56063	88950	88950					-0.007014398625187823
TPCAGGLDRR	10	Unmodified	_TPCAGGLDRR_					0	0	0			REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	523.264007	1044.51346	0.14764	7.7257E-05	-4.8137	-0.0025188	-4.6661	-0.0024416	523.2614131620393	106.37	0.54253	106.37	106.16	106.7	0	-0.22002	-0.00035447	NaN	25.574	47	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442300	+		80257	31221	55971	56063							-0.007014398625187823
TPCAGGLDRR	10	Unmodified	_TPCAGGLDRR_					0	0	0			REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	523.264007	1044.51346	-0.24344	-0.00012739	-4.9803	-0.002606	-5.2237	-0.0027334	523.2613759850262	106.8	0.5076	106.67	106.45	106.95	-0.12381	0.081612	-0.00052882	NaN	25.574	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292760	+		80258	31221	55971	56063							-0.007014398625187823
TPCAGGLDRR	10	Unmodified	_TPCAGGLDRR_					0	0	0			REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.264007	1044.51346	-1.1019	-0.00057657	-3.7659	-0.0019706	-4.8678	-0.0025471	523.2620149705028	106.87	0.5325	106.73	106.47	107.01	-0.1346	0.14051	0.00074207	NaN	25.574	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282090	+		80259	31221	55971	56063							-0.007014398625187823
TPCAGGLDRR	10	Unmodified	_TPCAGGLDRR_					0	0	0			REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	REV__ENST00000372894.7_1_20:43247265-43247484:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.264007	1044.51346	0.6729	0.0003521	-5.5837	-0.0029217	-4.9108	-0.0025696	523.2608918281745	106.94	0.61209	106.79	106.54	107.15	-0.15772	0.19553	-0.0011603	NaN	25.574	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278550	+		80260	31221	55971	56063							-0.007014398625187823
TPCHKVAE	8	Unmodified	_TPCHKVAE_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.26556396484375	2	442.71837	883.422187	-0.51169	-0.00022653	-2.8461	-0.00126	-3.3578	-0.0014866	442.71699890431967	39.121	0.74046	39.022	38.807	39.547	-0.098751					30	20	2	0	0	0	0.027866	1	3349	3349		44.117	6.9577	1	284890	+		80261	24983	55972	56064	88951	88951					-0.024187035598401962
TPDCSPPSPD	10	Unmodified	_TPDCSPPSPD_					0	0	0		nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;ANKS1B|p.H862Tfs*15|1|0.17|ENSG00000185046|chr12:99084967-99084967|C/-|frameshift_variant	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.22772216796875	2	508.205489	1014.39643	-0.40206	-0.00020433	3.821	0.0019419	3.419	0.0017375	508.20702105078703	30.489	0.32959	30.245	30.035	30.364	-0.24415					12	7	2	0	0	0	0.03519	1	1960	1960		27.882	0	1	33687			80262	18588	55973	56065	88952	88952					-0.11019642592782475
TPDINPSQF	9	Unmodified	_TPDINPSQF_					0	0	0			REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.76348876953125	2	509.745639	1017.47673	-0.27387	-0.00013961	-1.7445	-0.00088924	-2.0183	-0.0010288	509.745829077484	49.348	0.41938	49.069	48.861	49.28	-0.27977					18	10	2	0	0	0	0.024466	1	4965	4965		31.53	14.825	1	265570	+		80263	22493	55974	56066	88953	88953					-0.0313141320741579
TPDIQYAKHSI	11	Unmodified	_TPDIQYAKHSI_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.89007568359375	3	424.890944	1271.651	-0.5317	-0.00022591	-1.66	-0.00070531	-2.1917	-0.00093122	424.89036779207765	20.463	2.26	20.358	19.981	22.241	-0.10477					140	46	6	0	0	0	0.97516	1	547	547		42.338	1.258	1	3744000	+		80264	21984	55975	56067	88954	88954					0.02604167217896247
TPDPPRRE	8	Unmodified	_TPDPPRRE_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.3005676269531	2	484.251423	966.488293	-0.11692	-5.6619E-05	0.51668	0.0002502	0.39976	0.00019358	484.2516696570627	60.248	0.11246	60	59.945	60.058	-0.24842					4	2	2	0	0	0	0.027866	1	6683	6683		30.504	0	1	54009			80265	6029	55976	56068	88955	88955					0.003708286065716493
TPDPSSTFPL	10	Unmodified	_TPDPSSTFPL_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2619018554688	2	531.261122	1060.50769	-0.87316	-0.00046388	0.99394	0.00052804	0.12078	6.4164E-05	531.2616686728992	104	0.5307	103.87	103.57	104.1	-0.12927					24	13	2	0	0	0	1.0393	1	12954	12954		40.778	5.1599	1	197770	+		80266	27830	55977	56069	88956	88956					-0.020142598931897737
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	400.90325927734375	3	400.903072	1199.68739	1.5561	0.00062385	-1.4867	-0.00059604	0.069379	2.7814E-05	400.9024379931997	51.16	1.0265	51.16	50.81	51.836	0					86	28	5	0	0	0	0.11127	3	5403	5403;5416;5428		108.31	34.472	1	7646200			80267	6741;15202	55978	56070	88957;88958;88959	88957					0.0955304411461384
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	400.9028015136719	3	400.903072	1199.68739	0.12434	4.9846E-05	-0.30532	-0.00012241	-0.18099	-7.2559E-05	400.9029265051892	51.324	1.1577	51.175	50.861	52.019	-0.14916					81	32	4	0	0	0	0.063826	3	5399	5399;5409;5435		117.71	38.636	1	6606300			80268	6741;15202	55978	56070	88960;88961;88962	88960					0.0955304411461384
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.90313720703125	3	400.903072	1199.68739	1.7791	0.00071323	-1.8805	-0.00075389	-0.10142	-4.0661E-05	400.90227729418086	51.068	1.0995	51.155	50.615	51.715	0.087006					88	30	4	0	0	0	0.37749	4	5315	5303;5315;5327;5342		84.31	14.205	1	6452800			80269	6741;15202	55978	56070	88963;88964;88965;88966	88964					0.0955304411461384
TPEARRLK	8	Unmodified	_TPEARRLK_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7740783691406	2	485.793258	969.571963	-0.54504	-0.00026478	-0.10136	-4.9238E-05	-0.6464	-0.00031401	485.79308305588404	27.278	0.67843	27.109	26.809	27.487	-0.16816					35	15	3	0	0	0	0.027866	1	1499	1499		68.787	15.435	1	273670			80270	6090	55979	56071	88967	88967					0.08595984774285625
TPEARRLK	8	Unmodified	_TPEARRLK_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.7737121582031	2	485.793258	969.571963	0.038879	1.8887E-05	-0.44769	-0.00021748	-0.40881	-0.0001986	485.79277145701224	27.427	0.75454	27.27	26.93	27.685	-0.15664					28	17	2	0	0	0	0.027866	1	1483	1483		52.299	13.493	1	290360			80271	6090	55979	56071	88968	88968					0.08595984774285625
TPEDGPDVIE	10	Unmodified	_TPEDGPDVIE_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.2468872070312	2	536.245669	1070.47678	-0.78009	-0.00041832	2.8071	0.0015053	2.0271	0.001087	536.2470433581592	70.21	2.4621	70.222	69.831	72.293	0.012421					97	64	2	0	0	0	1.0508	1	8405	8405		39.253	1.4413	1	4146200	+		80272	24738	55980	56072	88969	88969					-0.05563457998096055
TPEEESPAK	9	Unmodified	_TPEEESPAK_					0	0	0		ENSG00000130956|ENST00000375249|HABP4	ENSG00000130956|ENST00000375249|HABP4	ENSG00000130956|ENST00000375249|HABP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7795715332031	2	494.235104	986.455655	1.9228	0.00095029	-1.1197	-0.0005534	0.80305	0.0003969	494.23448046505007	23.963	0.26632	23.782	23.626	23.893	-0.18089					8	5	2	0	0	0	0.024397	1	978	978		47.657	36.146	1	25841			80273	4478	55981	56073	88970	88970					-0.038114233069450165
TPEEESPAK	9	Unmodified	_TPEEESPAK_					0	0	0		ENSG00000130956|ENST00000375249|HABP4	ENSG00000130956|ENST00000375249|HABP4	ENSG00000130956|ENST00000375249|HABP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.235104	986.455655	-0.16586	-8.1973E-05	0.35295	0.00017444	0.18709	9.2465E-05	494.2353172195882	23.749	0.4709	23.749	23.523	23.994	0	-0.019919	-0.00036005	NaN	47.657	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86414			80274	4478	55981	56073							-0.038114233069450165
TPEEESPAK	9	Unmodified	_TPEEESPAK_					0	0	0		ENSG00000130956|ENST00000375249|HABP4	ENSG00000130956|ENST00000375249|HABP4	ENSG00000130956|ENST00000375249|HABP4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.235104	986.455655	-0.73514	-0.00036333	1.5159	0.00074919	0.78071	0.00038586	494.2354464170963	23.735	0.51544	23.675	23.428	23.943	-0.060862	-0.094781	0.00078945	NaN	47.657	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115480			80275	4478	55981	56073							-0.038114233069450165
TPEERKKKPQL	11	Unmodified	_TPEERKKKPQL_					0	0	0			REV__ENST00000473131.5_1_20:5924535-5931132:-|nuORF	REV__ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	452.26776123046875	3	451.933143	1352.7776	0.91985	0.00041571	-2.0117	-0.00090914	-1.0918	-0.00049343	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0764	1	12371	12371		17.833	1.8264	1	1435400	+		80276	20846	55982	56074	88971	88971					0.11532093443042868
TPEFQANKVQK	11	Unmodified	_TPEFQANKVQK_					0	0	0		ENST00000418838.1_1_X:40219448-40219874:-|nuORF	ENST00000418838.1_1_X:40219448-40219874:-|nuORF	ENST00000418838.1_1_X:40219448-40219874:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.23541259765625	3	430.56646	1288.67755	0.56917	0.00024507	3.4045	0.0014659	3.9737	0.0017109	430.5679562314814	24.642	0.72274	24.72	24.41	25.132	0.078344					25	15	2	0	0	0	0.024798	1	1073	1073		8.4073	0	1	79592			80277	13944	55983	56075	88972	88972					0.04475856109229426
TPEFVGAQK	9	Unmodified	_TPEFVGAQK_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.75799560546875	2	488.758549	975.502546	-0.62259	-0.0003043	0.94646	0.00046259	0.32387	0.00015829	488.75899349907786	43.466	1.2758	43.326	42.956	44.232	-0.13929					71	35	5	0	0	0	0.17455	1	4036	4036		94.006	3.2298	1	10529000	+		80278	22533	55984	56076	88973	88973					0.013814810348662832
TPEFVGAQK	9	Unmodified	_TPEFVGAQK_					0	0	0			REV__ENSG00000120438|ENST00000321394|TCP1	REV__ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7586364746094	2	488.758549	975.502546	-0.047003	-2.2973E-05	-0.038293	-1.8716E-05	-0.085296	-4.1689E-05	488.75856266750395	43.36	1.0544	43.39	43.082	44.136	0.030823					60	28	4	0	0	0	0.25032	1	3982	3982		82.305	5.4584	1	11840000	+		80279	22533	55984	56076	88974	88974					0.013814810348662832
TPEIKSWNI	9	Unmodified	_TPEIKSWNI_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.3330078125	2	544.292756	1086.57096	-0.10842	-5.9012E-05	-0.098648	-5.3694E-05	-0.20707	-0.00011271	544.2925606436344	97.058	1.401	97.067	96.619	98.019	0.0089111					60	31	3	0	0	0	0.023655	1	12321	12321		69.628	7.5202	1	846790	+		80280	24539	55985	56077	88975	88975					0.031137256147076187
TPEKLWDW	8	Unmodified	_TPEKLWDW_					0	0	0		ENST00000485714.1_1_1:46657733-46659087:-|nuORF;ENST00000396420.7_1_1:46654944-46659087:-|nuORF;ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	ENST00000485714.1_1_1:46657733-46659087:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3292236328125	2	537.766374	1073.5182	-0.19132	-0.00010288	3.4119	0.0018348	3.2206	0.0017319	537.7680366763677	82.075	0.72535	81.882	81.419	82.144	-0.19334					24	16	2	0	0	0	0.027866	1	9846	9846		20.947	0	1	200540			80281	1805	55986	56078	88976	88976					-0.01562232448100076
TPEKTGPV	8	Unmodified	_TPEKTGPV_					0	0	0			REV__ENST00000436565.2_1_13:77559322-77559421:+|nuORF	REV__ENST00000436565.2_1_13:77559322-77559421:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.7373962402344	2	414.726718	827.438883	-0.038559	-1.5992E-05	0.060564	2.5118E-05	0.022005	9.126E-06	414.7268768206979	75.804	0.36477	75.804	75.516	75.881	0					13	9	2	0	0	0	0.027866	1	9278	9278		35.618	0	1	184070	+		80282	32464	55987	56079	88977	88977					0.018261205977637474
TPEKVQNW	8	Unmodified	_TPEKVQNW_					0	0	0		ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.7999267578125	2	501.256174	1000.49779	-1.0936	-0.00054817	-0.39542	-0.0001982	-1.489	-0.00074637	501.2558499337405	44.745	0.35471	44.534	44.399	44.754	-0.21109					16	8	2	0	0	0	0.027866	1	4187	4187		30.504	22.269	1	204930			80283	3900	55988	56080	88978	88978					-0.0024340310790194053
TPELLWVT	8	Unmodified	_TPELLWVT_					0	0	0			REV__ENSG00000212899|ENST00000391586|KRTAP3-3	REV__ENSG00000212899|ENST00000391586|KRTAP3-3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2899169921875	2	479.765843	957.517133	-0.24383	-0.00011698	1.7315	0.00083073	1.4877	0.00071375	479.76669613410746	25.528	0.57434	25.528	25.248	25.823	0					20	13	2	0	0	0	0.027866	1	1225	1225		50.025	14.824	1	86527	+		80284	28721	55989	56081	88979	88979					0.03667553183004202
TPENSWTP	8	Unmodified	_TPENSWTP_					0	0	0		CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2371520996094	2	466.211432	930.408311	-0.91538	-0.00042676	3.4867	0.0016255	2.5713	0.0011988	466.21108855890816	28.096	0.36342	28.096	27.999	28.362	0					12	8	2	0	0	0	0.027866	1	1644	1644		58.782	28.278	1	31193			80285	231	55990	56082	88980	88980					-0.05967657787289227
TPEPSPRRG	9	Unmodified	_TPEPSPRRG_					0	0	0		UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant;nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	UMODL1|p.R802Lfs*97|1|0.19|ENSG00000177398|chr21:42115911-42115915|GTCAG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.7752685546875	2	498.764697	995.514842	-0.15087	-7.5251E-05	-3.1012	-0.0015468	-3.2521	-0.001622	498.7629402479042	100.79	0.74024	100.61	100.5	101.24	-0.17178					32	19	2	0	0	0	0.024292	1	12511	12511		68.787	2.9837	1	281730			80286	8734	55991	56083	88981	88981					0.016905174979115145
TPEQIEKIY	9	Unmodified	_TPEQIEKIY_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.7982177734375	2	560.797872	1119.58119	-0.86745	-0.00048647	0.26238	0.00014714	-0.60507	-0.00033932	560.7979071154483	55.35	0.85149	55.204	54.837	55.688	-0.14609					82	23	6	0	0	0	0.28753	1	5947	5947		77.318	3.0625	1	12824000			80287	1815	55992	56084	88982	88982					0.026182885492971764
TPERCQPQ	8	Unmodified	_TPERCQPQ_					0	0	0			REV__ENST00000572221.5_1_16:67907101-67909932:+|nuORF	REV__ENST00000572221.5_1_16:67907101-67909932:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2899169921875	2	479.724184	957.433814	0.0012718	6.1009E-07	0.77276	0.00037071	0.77403	0.00037132	479.72439445237353	25.743	1.3342	25.743	25.324	26.658	0					39	31	2	0	0	0	0.027866	1	1225	1225		55.504	45.799	1	38447	+		80288	35422	55993	56085	88983	88983					-0.04660506536504272
TPETGQNMSV	10	Unmodified	_TPETGQNMSV_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2384643554688	2	532.239864	1062.46517	-0.6044	-0.00032168	-2.623	-0.0013961	-3.2274	-0.0017177	532.2383187042672	40.269	0.59568	40.044	39.773	40.368	-0.225					48	15	4	0	0	0	0.80817	1	3451	3451		60.118	15.096	1	3674100	+		80289	25874	55994	56086	88984	88984					-0.0635597829307244
TPETGQNMSV	10	Unmodified	_TPETGQNMSV_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.238525390625	2	532.239864	1062.46517	-1.0388	-0.00055288	-2.0116	-0.0010707	-3.0504	-0.0016236	532.2385917317774	40.248	0.646	40.017	39.697	40.343	-0.23021					51	16	4	0	0	0	0.88896	1	3443	3443		54.776	6.8607	1	3673500	+		80290	25874	55994	56086	88985	88985					-0.0635597829307244
TPETKIMVP	9	Unmodified	_TPETKIMVP_					0	0	0			REV__ENSG00000120685|ENST00000352251|PROSER1	REV__ENSG00000120685|ENST00000352251|PROSER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2277526855469	2	508.27826	1014.54197	-0.4042	-0.00020545	2.6331	0.0013384	2.2289	0.0011329	508.2795267567659	30.49	0.37527	30.245	29.948	30.323	-0.24415					18	8	3	0	0	0	0.024523	1	1937	1937		29.15	0	1	76438	+		80291	22547	55995	56087	88986	88986					0.03527864994077845
TPETKIMVP	9	Unmodified	_TPETKIMVP_					0	0	0			REV__ENSG00000120685|ENST00000352251|PROSER1	REV__ENSG00000120685|ENST00000352251|PROSER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.227783203125	2	508.27826	1014.54197	-0.26267	-0.00013351	2.7814	0.0014137	2.5187	0.0012802	508.2795430777311	30.269	0.42249	30.12	29.879	30.301	-0.14952					15	9	2	0	0	0	0.024477	1	1911	1911		35.618	24.753	1	117690	+		80292	22547	55995	56087	88987	88987					0.03527864994077845
TPETSCRLA	9	Unmodified	_TPETSCRLA_					0	0	0			REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF	REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7586364746094	2	489.239667	976.46478	-0.38506	-0.00018839	1.98	0.0009687	1.5949	0.00078031	489.2399340143792	43.819	1.1428	43.85	43.191	44.334	0.030827					55	31	2	0	0	0	0.023837	1	3982	3982		74.255	14.137	1	360330	+		80293	30838	55996	56088	88988	88988					-0.024393532222802605
TPEVFGLHP	9	Unmodified	_TPEVFGLHP_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.7745056152344	2	498.761092	995.507631	0.43444	0.00021668	3.5977	0.0017944	4.0322	0.0020111	498.76275168502514	100.84	0.73277	100.7	100.53	101.27	-0.13364					33	18	2	0	0	0	0.024262	1	12521	12521		57.811	13.694	1	267830			80294	18641	55997	56089	88989	88989					0.009697848974838053
TPEWPTRKP	9	Unmodified	_TPEWPTRKP_					0	0	0			REV__ENST00000436233.8_1_17:75208050-75208206:+|nuORF	REV__ENST00000436233.8_1_17:75208050-75208206:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	556.7315063476562	2	556.298373	1110.58219	-0.51091	-0.00028422	-3.218	-0.0017902	-3.7289	-0.0020744	556.2965628029673	32.103	0.59021	31.945	31.694	32.284	-0.15772					18	13	2	0	0	0	0.024523	1	2201	2201		15.642	0	1	186240	+		80295	32460	55998	56090	88990	88990					0.03132547708855782
TPEWSLLI	8	Unmodified	_TPEWSLLI_					0	0	0			REV__ENST00000370010.6_1_6:76311739-76312006:+|nuORF	REV__ENST00000370010.6_1_6:76311739-76312006:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.28955078125	2	479.765843	957.517133	-0.52775	-0.0002532	1.9259	0.00092399	1.3982	0.0006708	479.76685889817503	25.628	0.6227	25.594	25.275	25.898	-0.034395					26	14	2	0	0	0	0.027866	1	1216	1216		52.299	0	1	120310	+		80296	31107	55999	56091	88991	88991					0.03667553183004202
TPEYKVLED	9	Unmodified	_TPEYKVLED_					0	0	0		nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF;ENST00000497465.1_1_15:44065316-44067617:-|nuORF	nc|ENSG00000128886|Q9HB65-2|ELL3	nc|ENSG00000128886|Q9HB65-2|ELL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2865600585938	2	547.274229	1092.53391	-0.88997	-0.00048706	-2.2264	-0.0012184	-3.1163	-0.0017055	547.2729205729119	85.433	0.6211	85.375	85.104	85.725	-0.05761					24	14	2	0	0	0	0.024292	1	10728	10728		58.782	11.125	1	181590			80297	4318	56000	56092	88992	88992					-0.008659907216951979
TPEYKVLED	9	Unmodified	_TPEYKVLED_					0	0	0		nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF;ENST00000497465.1_1_15:44065316-44067617:-|nuORF	nc|ENSG00000128886|Q9HB65-2|ELL3	nc|ENSG00000128886|Q9HB65-2|ELL3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	547.274229	1092.53391	0.47643	0.00026074	-0.5674	-0.00031053	-0.090976	-4.9789E-05	547.2736623633812	85.436	0.41994	85.436	85.206	85.626	0	0.030172	0.00050328	NaN	58.782	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196430			80298	4318	56000	56092							-0.008659907216951979
TPFCLVLLY	9	Unmodified	_TPFCLVLLY_					0	0	0		OR2F2|p.S217Y|1|0.33|ENSG00000221910|chr7:143935882-143935882|C/A|missense_variant	OR2F2|p.S217Y|1|0.33|ENSG00000221910|chr7:143935882-143935882|C/A|missense_variant	OR2F2|p.S217Y|1|0.33|ENSG00000221910|chr7:143935882-143935882|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.766845703125	2	534.793546	1067.57254	0.18069	9.663E-05	-1.6518	-0.00088336	-1.4711	-0.00078672	534.7918689037605	37.027	0.23794	36.818	36.685	36.923	-0.2092					8	5	2	0	0	0	0.024386	1	2932	2932		33.516	0	1	53807			80299	18908	56001	56093	88993	88993					0.04145643379115427
TPFCRRPR	8	Unmodified	_TPFCRRPR_					0	0	0			REV__ENST00000461762.5_1_9:132593180-132593270:-|nuORF	REV__ENST00000461762.5_1_9:132593180-132593270:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2713623046875	2	516.779628	1031.5447	-0.91409	-0.00047238	-3.8677	-0.0019988	-4.7818	-0.0024711	517.278823507016	48.18	1.3024	48.247	47.497	48.8	0.066795					87	37	4	0	0	0	0.027866	1	4922	4922		19.36	0	1	2132700	+		80300	32873	56002	56094	88994	88994					0.030191779622327886
TPFHLKEA	8	Unmodified	_TPFHLKEA_					0	0	0			REV__ENST00000460400.1_1_20:20240345-20248156:-|nuORF	REV__ENST00000460400.1_1_20:20240345-20248156:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7821044921875	2	471.75581	941.497067	-0.0026375	-1.2443E-06	-3.3475	-0.0015792	-3.3501	-0.0015804	471.7536617486207	29.313	0.62309	29.391	28.904	29.527	0.078344					26	15	4	0	0	0	0.027866	1	1722	1722		35.618	15.622	1	124530	+		80301	32847	56003	56095	88995	88995					0.02397802243035585
TPFIRPVM	8	Unmodified	_TPFIRPVM_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	480.77056884765625	2	480.770406	959.526258	0.25002	0.0001202	1.2075	0.00058055	1.4576	0.00070075	480.7702091777703	58.732	1.4154	58.544	58.093	59.508	-0.18795					72	34	4	0	0	0	0.6536	3	6453	6453;6462;6476		71.296	18.497	1	3147500			80302	10421	56004	56096	88996;88997;88998	88996					0.04487623267687013
TPFIRPVM	8	Unmodified	_TPFIRPVM_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.77032470703125	2	480.770406	959.526258	0.063972	3.0756E-05	1.2888	0.00061961	1.3528	0.00065037	480.77032537317103	58.658	1.1337	58.476	58.101	59.235	-0.18134					55	27	3	0	0	0	0.77775	1	6475	6475		60.972	15.02	1	3092800			80303	10421	56004	56096	88999	88999					0.04487623267687013
TPFIRPVM	8	Unmodified	_TPFIRPVM_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000451446.1_1_13:24697062-24697869:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.770751953125	2	480.770406	959.526258	0.84709	0.00040725	1.3829	0.00066484	2.2299	0.0010721	480.76994743819836	58.801	1.3772	58.559	58.086	59.463	-0.24165					87	33	4	0	0	0	0.53523	1	6452	6452		82.305	5.4584	1	3281900			80304	10421	56004	56096	89000	89000					0.04487623267687013
TPFKIRLGMA	10	Unmodified	_TPFKIRLGMA_					0	0	0			REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3299560546875	2	567.328619	1132.64269	-0.94715	-0.00053735	3.2169	0.001825	2.2697	0.0012877	567.3302848841014	102.52	0.82284	102.52	102.3	103.12	0					41	19	4	0	0	0	1.1333	1	13141	13141		28.081	1.2854	1	875600	+		80305	20945	56005	56097	89001	89001					0.08166941767581193
TPFKIRLGMA	10	Unmodified	_TPFKIRLGMA_					0	0	0			REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.330078125	2	567.328619	1132.64269	0.34076	0.00019332	1.7277	0.00098018	2.0685	0.0011735	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0002	1	11069	11069		45.972	1.8554	1	4116000	+		80306	20945	56005	56097	89002	89002					0.08166941767581193
TPFLPIRA	8	Unmodified	_TPFLPIRA_					0	0	0		nc|ENSG00000179082|Q8NAJ2|LINC02913	nc|ENSG00000179082|Q8NAJ2|LINC02913	nc|ENSG00000179082|Q8NAJ2|LINC02913	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7972412109375	2	457.776545	913.538538	-0.52709	-0.00024129	1.2371	0.00056631	0.71	0.00032502	457.77686740176586	62.791	2.7273	62.552	62.207	64.934	-0.23926					150	74	3	0	0	0	0.027866	1	7664	7664		18.324	0	1	3588500			80307	18551	56006	56098	89003	89003					0.07830983002372705
TPFQVKGDL	9	Unmodified	_TPFQVKGDL_					0	0	0		ENST00000424266.6_1_6:41040043-41040205:-|nuORF;ENST00000479950.5_1_6:41039388-41040205:-|nuORF;ENST00000486443.5_1_6:41038950-41040205:-|nuORF	ENST00000424266.6_1_6:41040043-41040205:-|nuORF	ENST00000424266.6_1_6:41040043-41040205:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78173828125	2	502.7742	1003.53385	-0.96629	-0.00048583	-0.55932	-0.00028121	-1.5256	-0.00076704	502.7732114156503	28.607	0.16505	28.607	28.49	28.655	0					5	3	2	0	0	0	0.024319	1	1677	1677		31.53	0	1	32594			80308	14037	56007	56099	89004	89004					0.032220540689422705
TPFYFHFP	8	Unmodified	_TPFYFHFP_					0	0	0			REV__ENSG00000110195|ENST00000393676|FOLR1	REV__ENSG00000110195|ENST00000393676|FOLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.3060913085938	2	528.252903	1054.49125	-0.54168	-0.00028614	4.2968	0.0022698	3.7551	0.0019836	528.25444926451	31.439	0.48829	31.451	31.214	31.702	0.011797					16	11	3	0	0	0	0.027866	1	2116	2116		21.702	0	1	80898	+		80309	21845	56008	56100	89005	89005					-0.03381296268617007
TPGALLWLHGL	11	Unmodified	_TPGALLWLHGL_					0	0	0			REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	REV__nc|ENSG00000148204|Q5IJ48-3|CRB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.343505859375	2	589.340041	1176.66553	0.92698	0.00054631	3.2392	0.001909	4.1662	0.0024553	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.018	1	11434	11434		32.812	1.2826	1	4746700	+		80310	36768	56009	56101	89006	89006					0.0842628415668969
TPGANKVLFV	10	Unmodified	_TPGANKVLFV_					0	0	0		ENSG00000112812|ENST00000230582|PRSS16;ENST00000485603.1_1_6:27222413-27223091:+|nuORF;ENST00000468138.5_1_6:27219498-27223091:+|nuORF	ENSG00000112812|ENST00000230582|PRSS16	ENSG00000112812|ENST00000230582|PRSS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3038330078125	2	523.305667	1044.59678	-0.39586	-0.00020716	-3.9089	-0.0020455	-4.3047	-0.0022527	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	1.0122	3	10711	10639;10711;10723		44.377	6.4404	1	14072000			80311	3242	56010	56102	89007;89008;89009	89008					0.0762661985700106
TPGDAPVINL	10	Unmodified	_TPGDAPVINL_					0	0	0		ENSG00000205085|ENST00000682356|GARIN1A;nc|ENSG00000205085|Q6NXP2|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7713317871094	2	498.771657	995.528761	0.21295	0.00010622	-1.5928	-0.00079443	-1.3798	-0.00068822	498.7707660735286	104.97	1.7566	104.97	104.34	106.1	-0.0016022					133	55	5	0	0	0	1.0271	2	13415	13388;13415		42.396	3.1433	1	5105000			80312	10403	56011	56103	89010;89011	89011					0.030817502063200664
TPGDKKKQL	9	Unmodified	_TPGDKKKQL_					0	0	0		ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.8136291503906	2	507.800749	1013.58694	-0.50821	-0.00025807	-4.4882	-0.0022791	-4.9964	-0.0025372	507.79864084687927	93.045	0.38103	93.04	92.819	93.2	-0.0042038					13	8	2	0	0	0	0.024487	1	11764	11764		24.203	0	1	135730			80313	9441	56012	56104	89012	89012					0.0806943185162936
TPGEPAASLS	10	Unmodified	_TPGEPAASLS_					0	0	0		ENSG00000178718|ENST00000322177|RPP25	ENSG00000178718|ENST00000322177|RPP25	ENSG00000178718|ENST00000322177|RPP25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.7767639160156	2	465.232364	928.450176	-0.41103	-0.00019123	0.63155	0.00029382	0.22052	0.00010259	465.2325019726681	49.6	0.705	49.674	49.242	49.947	0.074196					27	18	2	0	0	0	0.03519	1	5024	5024		42.396	0	1	251340			80314	8832	56013	56105	89013	89013					-0.01691102098743613
TPGGHKTK	8	Unmodified	_TPGGHKTK_					0	0	0		ENSG00000197416|ENST00000692030|FABP12	ENSG00000197416|ENST00000692030|FABP12	ENSG00000197416|ENST00000692030|FABP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.268798828125	2	413.232502	824.450451	0.017287	7.1436E-06	4.4601	0.0018431	4.4774	0.0018502	413.2340842232059	28.146	0.45051	28.226	28.124	28.574	0.080811					12	10	2	0	0	0	0.027866	1	1582	1582		44.117	12.162	1	39293			80315	9994	56014	56106	89014	89014					0.031203624117551954
TPGGVQIQDSL	11	Unmodified	_TPGGVQIQDSL_					0	0	0		ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.3062744140625	2	557.790578	1113.5666	-0.59786	-0.00033348	-3.2517	-0.0018138	-3.8496	-0.0021472	557.7892984338262	61.916	0.4777	61.916	61.566	62.044	0					17	12	2	0	0	0	0.024747	1	7154	7154		24.519	1.4767	1	267000			80316	3910	56015	56107	89015	89015					0.014362164011572531
TPGISSSEET	10	Unmodified	_TPGISSSEET_					0	0	0		ENST00000524196.5_2_1:227058148-227059051:+|nuORF	ENST00000524196.5_2_1:227058148-227059051:+|nuORF	ENST00000524196.5_2_1:227058148-227059051:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.29644775390625	2	504.230019	1006.44548	3.5119	0.0017708	-3.9338	-0.0019836	-0.42196	-0.00021276	504.230020252645	18.826	0.24484	18.889	18.747	18.992	0.063307					7	4	2	0	0	0	0.03519	1	310	310		51.335	28.293	1	11718			80317	16055	56016	56108	89016	89016					-0.05748031032180734
TPGPARLSG	9	Unmodified	_TPGPARLSG_					0	0	0		ENST00000478389.5_1_20:57566005-57566065:+|nuORF	ENST00000478389.5_1_20:57566005-57566065:+|nuORF	ENST00000478389.5_1_20:57566005-57566065:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.23876953125	2	428.237784	854.461016	0.22468	9.6217E-05	-0.085639	-3.6674E-05	0.13904	5.9544E-05	428.23759017395633	32.414	1.4644	32.477	32.003	33.468	0.062885					86	38	4	0	0	0	0.54416	1	2198	2198		56.434	6.8977	1	1433300			80318	15146	56017	56109	89017	89017					0.027963450661900424
TPGPVAPLY	9	Unmodified	_TPGPVAPLY_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|316|3|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|316|3|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.2486267089844	2	457.752736	913.490919	-0.36799	-0.00016845	-3.706	-0.0016964	-4.074	-0.0018649	457.75086296943664	30.444	1.0849	30.453	30.082	31.167	0.0086708					69	25	5	0	0	0	0.88411	1	1964	1964		33.516	0.70317	1	3511700	+		80319	36126	56018	56110	89018	89018					0.03071284011514308
TPGQAGRRAS	10	Unmodified	_TPGQAGRRAS_					0	0	0		ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	ENSG00000163424|ENST00000295622|TEX55	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2311096191406	2	500.767771	999.52099	-1.3981	-0.00070015	1.368	0.00068506	-0.030122	-1.5084E-05	500.76784499644566	38.509	0.30903	38.537	38.462	38.771	0.027279					11	7	2	0	0	0	0.03519	1	3185	3185		8.6937	0	1	125240			80320	7075	56019	56111	89019	89019					0.021210357294194182
TPGSGYLSLFH	11	Unmodified	_TPGSGYLSLFH_					0	0	0		ENST00000262644.8_1_8:57872809-57872962:-|nuORF	ENST00000262644.8_1_8:57872809-57872962:-|nuORF	ENST00000262644.8_1_8:57872809-57872962:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.795166015625	2	589.795663	1177.57677	-1.3925	-0.00082132	0.30412	0.00017937	-1.0884	-0.00064195	589.795763009884	20.792	0.62068	20.688	20.424	21.045	-0.10477					32	12	3	0	0	0	1.018	1	585	585		32.812	4.9302	1	275550			80321	11509	56020	56112	89020	89020					-0.004911758736170668
TPGTTWIL	8	Unmodified	_TPGTTWIL_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;MUC5B|p.S3321Pfs*27|1|0.3|ENSG00000117983|chr11:1246836-1246836|C/-|frameshift_variant	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2244873046875	2	444.744911	887.475269	0.068342	3.0395E-05	-4.2996	-0.0019122	-4.2312	-0.0018818	444.74286950614083	29.712	0.84414	29.563	29.296	30.14	-0.14952					43	19	3	0	0	0	0.027866	1	1882	1882		18.324	0	1	643070			80322	3665	56021	56113	89021	89021					0.027029974944866808
TPHGGVREL	9	Unmodified	_TPHGGVREL_					0	0	0			REV__ENSG00000197380|ENST00000391916|DACT3	REV__ENSG00000197380|ENST00000391916|DACT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2772521972656	2	483.261791	964.509028	-0.41275	-0.00019947	0.79119	0.00038235	0.37844	0.00018289	483.26201676920743	24.521	0.44422	24.521	24.297	24.741	0					20	9	3	0	0	0	0.024263	1	1095	1095		51.335	0	1	238560	+		80323	28298	56022	56114	89022	89022					0.025354189862468957
TPHKSRVE	8	Unmodified	_TPHKSRVE_					0	0	0			REV__ENSG00000204442|ENST00000375915|NALF1	REV__ENSG00000204442|ENST00000375915|NALF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.23724365234375	2	477.261791	952.509028	-0.14324	-6.8364E-05	1.6049	0.00076596	1.4617	0.0006976	477.2624253400572	31.387	0.67896	31.456	31.166	31.845	0.06896					24	16	2	0	0	0	0.027866	1	2023	2023		21.96	0	1	109650	+		80324	28606	56023	56115	89023	89023					0.03087418986240209
TPHLHSIL	8	Unmodified	_TPHLHSIL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2637939453125	2	459.263802	916.513051	-0.098593	-4.528E-05	0.1512	6.9441E-05	0.052608	2.4161E-05	459.26372469807336	42.124	0.85069	41.992	41.641	42.491	-0.13219					80	24	5	0	0	0	0.52467	1	3827	3827		83.287	8.7706	1	5106500			80325	2258	56024	56116	89024	89024					0.05145508479961336
TPHLHSIL	8	Unmodified	_TPHLHSIL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2636413574219	2	459.263802	916.513051	-0.040593	-1.8643E-05	-0.45027	-0.00020679	-0.49086	-0.00022544	459.26360749820844	41.97	0.96232	41.847	41.527	42.49	-0.12299					49	25	2	0	0	0	0.43637	1	3754	3754		92.191	5.256	1	11769000			80326	2258	56024	56116	89025	89025					0.05145508479961336
TPHQPNHQP	9	Unmodified	_TPHQPNHQP_					0	0	0		nc|ENSG00000138336|Q8NFU7-3|TET1;nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-3|TET1	nc|ENSG00000138336|Q8NFU7-3|TET1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.806640625	2	528.254497	1054.49444	-1.122	-0.0005927	1.5628	0.00082553	0.44075	0.00023283	528.2553074900111	50.02	0.71746	50.02	49.694	50.411	0					39	20	3	0	0	0	0.02435	1	5174	5174		34.173	0	1	832720			80327	5227	56025	56117	89026	89026					-0.030626531619191155
TPHVLTHRW	9	Unmodified	_TPHVLTHRW_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|65|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|65|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|65|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	573.8114624023438	2	573.811982	1145.60941	0.29268	0.00016795	-1.0262	-0.00058882	-0.73348	-0.00042088	573.8112828659573	20.637	0.63919	20.706	20.464	21.103	0.068901					29	12	4	0	0	0	0.94809	1	529	529		29.15	0	1	176000			80328	17870	56026	56118	89027	89027					0.042430760398929124
TPIALTVFL	9	Unmodified	_TPIALTVFL_					0	0	0		nc|ENSG00000139324|Q6ZXV5|TMTC3;ENSG00000139324|ENST00000266712|TMTC3;TMTC3|p.P277Lfs*5|1|0.27|ENSG00000139324|chr12:88166361-88166361|C/-|frameshift_variant	nc|ENSG00000139324|Q6ZXV5|TMTC3	nc|ENSG00000139324|Q6ZXV5|TMTC3	MSMS	OPSCC_40_ClassI_Rep-2	5	487.7999267578125	2	487.799686	973.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.167	1	98.042	97.542	98.542	-0.12413								0	0	0	0.52164	1	12164	12164		50.025	7.5501	1				80329	5325	56027	56119	89028	89028					0.09697003113808478
TPIFLTQGQKV	11	Unmodified	_TPIFLTQGQKV_					0	0	0			REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	REV__nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	616.35693359375	2	616.355888	1230.69722	0.34681	0.00021376	-0.26364	-0.0001625	0.083169	5.1262E-05	616.355660354759	85.546	1.502	85.546	84.669	86.171	0					81	35	4	0	0	0	0.58492	1	10728	10728		70.816	1.1886	1	618320	+		80330	26723	56028	56120	89029	89029					0.09110232119996908
TPILLLINL	9	Unmodified	_TPILLLINL_					0	0	0			REV__ENSG00000164002|ENST00000415550|EXO5	REV__ENSG00000164002|ENST00000415550|EXO5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.7828674316406	2	505.336436	1008.65832	-0.50363	-0.0002545	-2.7238	-0.0013764	-3.2274	-0.0016309	505.33492846110585	30.882	0.45698	30.893	30.627	31.084	0.011797					26	10	3	0	0	0	0.024541	1	1967	1967		27.882	9.5578	1	228590	+		80331	25667	56029	56121	89030	89030					0.15433551556270686
TPILLLINL	9	Unmodified	_TPILLLINL_					0	0	0			REV__ENSG00000164002|ENST00000415550|EXO5	REV__ENSG00000164002|ENST00000415550|EXO5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	505.336436	1008.65832	-1.1382	-0.00057517	-1.9233	-0.0009719	-3.0615	-0.0015471	505.335260081011	30.915	0.49769	30.915	30.675	31.173	0	0.068397	0.00044972	NaN	26.693	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226060	+		80332	25667	56029	56121							0.15433551556270686
TPILLLINL	9	Unmodified	_TPILLLINL_					0	0	0			REV__ENSG00000164002|ENST00000415550|EXO5	REV__ENSG00000164002|ENST00000415550|EXO5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	505.336436	1008.65832	-0.48476	-0.00024497	-2.5809	-0.0013042	-3.0656	-0.0015492	505.3349329884614	30.657	0.58494	30.732	30.502	31.087	0.074316	-0.11506	-0.00021488	NaN	26.693	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208960	+		80333	25667	56029	56121							0.15433551556270686
TPILVVRE	8	Unmodified	_TPILVVRE_					0	0	0		ENST00000261303.12_1_14:90734735-90735799:+|nuORF	ENST00000261303.12_1_14:90734735-90735799:+|nuORF	ENST00000261303.12_1_14:90734735-90735799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.22967529296875	2	463.78711	925.559667	-0.64828	-0.00030066	0.62557	0.00029013	-0.02271	-1.0533E-05	463.7868214763305	39.119	0.21419	39.02	38.949	39.163	-0.098755					7	5	2	0	0	0	0.027866	1	3344	3344		35.618	18.253	1	31953			80334	11467	56030	56122	89031	89031					0.09390948311227021
TPIPTGHDN	9	Unmodified	_TPIPTGHDN_					0	0	0			REV__ENSG00000169855|ENST00000464233|ROBO1	REV__ENSG00000169855|ENST00000464233|ROBO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2608337402344	2	476.230156	950.445759	-0.12395	-5.9029E-05	2.905	0.0013835	2.7811	0.0013244	476.23168802711507	29.654	0.45357	29.505	29.296	29.75	-0.14952					15	10	2	0	0	0	0.024466	1	1794	1794		12.812	0	1	52198	+		80335	26403	56031	56123	89032	89032					-0.031445665216665475
TPIQGTSEL	9	Unmodified	_TPIQGTSEL_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2476806640625	2	473.248015	944.481476	0.77535	0.00036693	-1.332	-0.00063036	-0.55663	-0.00026343	473.2473091353023	50.971	0.75947	50.971	50.707	51.466	0					48	20	3	0	0	0	0.077175	3	5377	5368;5377;5392		118.74	25.548	1	3855000			80336	957	56032	56124	89033;89034;89035	89034					0.007014709353256876
TPIQGTSEL	9	Unmodified	_TPIQGTSEL_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2472839355469	2	473.248015	944.481476	0.1419	6.7156E-05	-0.71097	-0.00033647	-0.56907	-0.00026931	473.2476051780999	51.142	0.71639	50.993	50.723	51.439	-0.14916					54	19	3	0	0	0	0.30449	2	5373	5373;5384		75.043	4.0924	1	3286800			80337	957	56032	56124	89036;89037	89036					0.007014709353256876
TPIQGTSEL	9	Unmodified	_TPIQGTSEL_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2472229003906	2	473.248015	944.481476	-0.3824	-0.00018097	-0.33912	-0.00016049	-0.72153	-0.00034146	473.24776307690405	50.857	1.1683	50.944	50.615	51.783	0.087006					62	32	3	0	0	0	0.16638	2	5293	5293;5304		95.815	16.374	1	3882100			80338	957	56032	56124	89038;89039	89038					0.007014709353256876
TPISRLVAL	9	Unmodified	_TPISRLVAL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.30841064453125	2	485.30821	968.601866	-0.12676	-6.1517E-05	-0.144	-6.9886E-05	-0.27076	-0.0001314	485.3079967023149	63.949	1.2884	63.721	63.366	64.654	-0.22773					80	32	4	0	0	0	0.33603	3	7250	7240;7250;7262		70.816	21.605	1	2430600			80339	8780	56033	56125	89040;89041;89042	89041					0.11630923719621933
TPISRLVAL	9	Unmodified	_TPISRLVAL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.3084411621094	2	485.30821	968.601866	-0.040977	-1.9886E-05	-0.1789	-8.6824E-05	-0.21988	-0.00010671	485.30797581422706	63.994	1.328	63.802	63.38	64.708	-0.19243					74	33	4	0	0	0	0.33603	3	7260	7250;7260;7271		70.816	21.605	1	2437200			80340	8780	56033	56125	89043;89044;89045	89044					0.11630923719621933
TPISRLVAL	9	Unmodified	_TPISRLVAL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.3083190917969	2	485.30821	968.601866	0.21066	0.00010224	-0.38012	-0.00018447	-0.16946	-8.2238E-05	485.3078614307708	64.041	1.1114	63.783	63.39	64.501	-0.25824					78	28	4	0	0	0	0.26413	3	7265	7243;7252;7265		80.455	25.678	1	2623700			80341	8780	56033	56125	89046;89047;89048	89048					0.11630923719621933
TPKDPQAPC	9	Unmodified	_TPKDPQAPC_					0	0	0			REV__ENSG00000077157|ENST00000608999|PPP1R12B	REV__ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7723693847656	2	478.728935	955.443317	-0.79888	-0.00038245	1.3204	0.00063212	0.52153	0.00024967	478.72937485083685	35.565	1.0411	35.543	34.976	36.017	-0.021763					42	27	2	0	0	0	0.024319	1	2762	2762		47.657	3.5405	1	130950	+		80342	20582	56034	56126	89049	89049					-0.03618738250986553
TPKEKAEAL	9	Unmodified	_TPKEKAEAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.779296875	2	493.779482	985.544411	-0.11977	-5.9141E-05	0.43162	0.00021313	0.31185	0.00015398	493.77933034580843	23.896	1.0592	23.716	23.318	24.378	-0.17989					37	24	2	0	0	0	0.78823	1	991	991		40.058	4.9061	1	795860			80343	300	56035	56127	89050	89050					0.0510603672336174
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.E2314Q|1|0.19|ENSG00000148773|chr10:128104900-128104900|C/G|missense_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2875671386719	2	493.287474	984.560395	-0.21668	-0.00010689	-0.26441	-0.00013043	-0.48109	-0.00023732	493.2873143771843	22.172	1.2161	22.172	21.771	22.987	0					65	25	5	0	0	0	0.28753	3	737	737;749;761		77.318	16.445	1	3576000			80344	300	56036	56128	89051;89052;89053	89051					0.06749742960278127
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.E2314Q|1|0.19|ENSG00000148773|chr10:128104900-128104900|C/G|missense_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2875061035156	2	493.287474	984.560395	-0.33192	-0.00016373	-0.16398	-8.0892E-05	-0.49591	-0.00024463	493.28736262475627	22.276	1.2216	22.2	21.745	22.966	-0.075296					70	25	5	0	0	0	0.2101	3	763	742;751;763		87.696	20.643	1	3385700			80345	300	56036	56128	89054;89055;89056	89056					0.06749742960278127
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.E2314Q|1|0.19|ENSG00000148773|chr10:128104900-128104900|C/G|missense_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.2874450683594	2	493.287474	984.560395	-1.2111	-0.00059741	0.68133	0.00033609	-0.52976	-0.00026132	493.28778333225864	22.075	1.2443	22.149	21.687	22.931	0.073956					63	25	4	0	0	0	0.28753	2	706	694;706		77.318	19.534	1	3641700			80346	300	56036	56128	89057;89058	89058					0.06749742960278127
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.E2314Q|1|0.19|ENSG00000148773|chr10:128104900-128104900|C/G|missense_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2872314453125	2	493.287474	984.560395	-0.021172	-1.0444E-05	-1.0081	-0.00049726	-1.0292	-0.0005077	493.287070092578	22.357	1.5154	22.168	21.816	23.331	-0.18894					90	32	5	0	0	0	0.28753	3	796	772;784;796		77.318	19.088	1	17015000			80347	300	56036	56128	89059;89060;89061	89061					0.06749742960278127
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.E2314Q|1|0.19|ENSG00000148773|chr10:128104900-128104900|C/G|missense_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.2872619628906	2	493.287474	984.560395	-0.52724	-0.00026008	-0.49528	-0.00024432	-1.0225	-0.0005044	493.28730389578874	22.489	1.2845	22.304	21.952	23.237	-0.18539					84	27	5	0	0	0	0.15366	4	795	783;795;807;820		98.629	21.312	1	15760000			80348	300	56036	56128	89062;89063;89064;89065	89063					0.06749742960278127
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.E2314Q|1|0.19|ENSG00000148773|chr10:128104900-128104900|C/G|missense_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.287353515625	2	493.287474	984.560395	0.38789	0.00019134	-1.4931	-0.00073654	-1.1052	-0.0005452	493.2868186624525	22.464	1.2377	22.262	21.999	23.237	-0.20199					83	26	5	0	0	0	0.12914	3	789	756;765;789		104.06	21.306	1	15279000			80349	300	56036	56128	89066;89067;89068	89068					0.06749742960278127
TPKGKAQP	8	Unmodified	_TPKGKAQP_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67;ENSG00000148773|ENST00000368654|MKI67	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.19476318359375	2	413.742702	825.470852	-0.64649	-0.00026748	1.3892	0.00057478	0.74273	0.0003073	413.7431602632618	22.454	0.92072	22.268	22.094	23.015	-0.18539					24	19	2	0	0	0	0.027866	1	886	886		15.642	0	1	152510			80350	300	56037	56129	89069	89069					0.05113533071562415
TPKGRAPPRLG	11	Unmodified	_TPKGRAPPRLG_					0	0	0		nc|ENSG00000125746|O95834-2|EML2;OPA3-EML2|1|fusion;nc|ENSG00000125746|O95834-3|EML2;ENST00000585386.1_1_19:46145287-46148597:-|nuORF	nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-2|EML2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.344970703125	2	575.346189	1148.67783	0.86329	0.00049669	-2.0418	-0.0011747	-1.1785	-0.00067804	575.3449012149558	97.098	1.2775	96.961	96.613	97.89	-0.13671					99	28	5	0	0	0	1.0392	1	12062	12062		28.081	0.19925	1	3730600			80351	18245	56038	56130	89070	89070					0.10943320619730912
TPKKGARP	8	Unmodified	_TPKKGARP_					0	0	0			REV__ENSG00000095585|ENST00000224337|BLNK	REV__ENSG00000095585|ENST00000224337|BLNK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7406311035156	2	427.763969	853.513385	0.87496	0.00037428	-0.64013	-0.00027382	0.23483	0.00010045	427.7634381012196	22.554	0.55416	22.352	22.146	22.7	-0.20199					19	11	2	0	0	0	0.027866	1	784	784		40.573	10.069	1	90716	+		80352	20969	56039	56131	89071	89071					0.0807692819979593
TPKKGARPL	9	Unmodified	_TPKKGARPL_					0	0	0			REV__ENSG00000095585|ENST00000224337|BLNK	REV__ENSG00000095585|ENST00000224337|BLNK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2711181640625	2	484.306001	966.597449	-0.68817	-0.00033328	-0.053052	-2.5693E-05	-0.74122	-0.00035898	484.3059058006564	31.415	0.53875	31.415	31.131	31.669	0					26	12	3	0	0	0	0.024323	1	2075	2075		44.117	0	1	93869	+		80353	20969	56040	56132	89072	89072					0.11281459296708363
TPKKIAPVRP	10	Unmodified	_TPKKIAPVRP_					0	0	0			REV__ENSG00000078269|ENST00000355585|SYNJ2;REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__ENSG00000078269|ENST00000355585|SYNJ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.829833984375	2	553.855858	1105.69716	-0.61527	-0.00034077	3.8222	0.002117	3.207	0.0017762	553.856025849334	89.033	0.21004	88.863	88.714	88.924	-0.17054					5	4	2	0	0	0	0.03519	1	10862	10862		24.519	4.5224	1	18338	+		80354	20608;36477	56041	56133	89073	89073					0.14854276910659792
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2900695800781	2	479.290017	956.565481	-0.1334	-6.3937E-05	-0.39958	-0.00019152	-0.53298	-0.00025545	479.2897926204452	25.672	0.96147	25.672	25.445	26.406	0					66	22	5	0	0	0	0.12914	3	1235	1235;1248;1260		104.06	18.934	1	8145500			80355	5130	56042	56134	89074;89075;89076	89074					0.0854604682289164
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2899475097656	2	479.290017	956.565481	-0.4297	-0.00020595	-0.14974	-7.1771E-05	-0.57945	-0.00027772	479.28991002785864	25.738	1.0022	25.704	25.432	26.434	-0.034395					66	23	5	0	0	0	0.15366	3	1250	1225;1238;1250		98.629	22.541	1	7392500			80356	5130	56042	56134	89077;89078;89079	89079					0.0854604682289164
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2775573730469	2	479.290017	956.565481	1.6057	0.00076959	-3.9026	-0.0018705	-2.297	-0.0011009	479.2876115944761	83.027	0.12791	82.937	82.83	82.958	-0.090454					4	2	2	0	0	0	0.0245	1	10329	10329		22.58	0	1	35402			80357	5130	56042	56134	89080	89080					0.0854604682289164
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.29010009765625	2	479.290017	956.565481	0.23078	0.00011061	-0.83438	-0.00039991	-0.6036	-0.0002893	479.28958159307916	25.579	0.75122	25.659	25.418	26.169	0.080088					57	17	5	0	0	0	0.12914	4	1168	1159;1168;1180;1193		104.06	35.323	1	7656900			80358	5130	56042	56134	89081;89082;89083;89084	89082					0.0854604682289164
TPKLFNAALA	10	Unmodified	_TPKLFNAALA_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.303466796875	2	523.305667	1044.59678	-0.97748	-0.00051152	-2.8341	-0.0014831	-3.8115	-0.0019946	523.3040834261025	89.7	0.55897	89.537	89.215	89.774	-0.1626					23	12	2	0	0	0	1.0002	1	10979	10979		45.972	7.1661	1	949050			80359	1432	56043	56135	89085	89085					0.0762661985700106
TPKLGLLMV	9	Oxidation (M)	_TPKLGLLM(Oxidation (M))V_		TPKLGLLM(1)V		TPKLGLLM(48)V	0	0	1		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54951111-54953173:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3010559082031	2	494.298996	986.583439	0.003029	1.4972E-06	3.2604	0.0016116	3.2634	0.0016131	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	0.67308	1	12248	12248		47.916	7.343	1	42897000			80360	1362	56044	56136	89086	89086		42			0.08961045753403596
TPKLGLLMV	9	Oxidation (M)	_TPKLGLLM(Oxidation (M))V_		TPKLGLLM(1)V		TPKLGLLM(48)V	0	0	1		nc|ENSG00000067445|Q12816-2|TRO;ENSG00000067445|ENST00000173898|TRO;ENST00000492706.5_1_X:54951111-54953173:+|nuORF;nc|ENSG00000067445|Q12816-5|TRO;nc|ENSG00000067445|Q12816-3|TRO;nc|ENSG00000067445|Q12816-4|TRO	nc|ENSG00000067445|Q12816-2|TRO	nc|ENSG00000067445|Q12816-2|TRO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.30096435546875	2	494.298996	986.583439	0.83498	0.00041273	2.7667	0.0013676	3.6017	0.0017803	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	0.67308	1	11913	11913		47.916	7.343	1	37582000			80361	1362	56044	56136	89087	89087		42			0.08961045753403596
TPKLHTTLLKM	11	Unmodified	_TPKLHTTLLKM_					0	0	0			REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	REV__ENST00000554674.1_1_14:24799917-24801775:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8827514648438	2	641.881216	1281.74788	-0.70618	-0.00045328	2.528	0.0016227	1.8218	0.0011694	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0238	1	11978	11978		31.53	4.8369	1	3453200	+		80362	34996	56045	56137	89088	89088					0.1182743817332721
TPKLMVDLL	9	Oxidation (M)	_TPKLM(Oxidation (M))VDLL_		TPKLM(1)VDLL		TPKLM(57)VDLL	0	0	1		ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3035888671875	2	523.301736	1044.58892	0.49835	0.00026079	1.637	0.00085665	2.1354	0.0011174	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	0.53979	1	11009	11009		56.721	8.8055	1	11897000			80363	9081	56046	56138	89089	89089		380			0.06840724545213561
TPKLMVDLL	9	Oxidation (M)	_TPKLM(Oxidation (M))VDLL_		TPKLM(1)VDLL		TPKLM(48)VDLL	0	0	1		ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3033447265625	2	523.301736	1044.58892	0.12304	6.4388E-05	3.2645	0.0017083	3.3876	0.0017727	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	0.67687	1	10483	10483		47.657	12.505	1	3963900			80364	9081	56046	56138	89090	89090		380			0.06840724545213561
TPKLVEEH	8	Unmodified	_TPKLVEEH_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8;ENST00000573144.1_1_16:31141947-31142577:+|nuORF;ENST00000537402.1_1_16:31141947-31142310:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	476.7574768066406	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.29	1	100.29	99.787	100.79	-0.0050888								0	0	0	0.85517	1	12754	12754		30.504	5.9844	1				80365	2511	56047	56139	89091	89091					0.0248548103485291
TPKMLTLLA	9	Unmodified	_TPKMLTLLA_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.3008728027344	2	494.298996	986.583439	0.57173	0.00028261	2.7614	0.001365	3.3331	0.0016476	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	0.67687	1	12243	12243		47.657	1.7054	1	37513000	+		80366	27815	56048	56140	89092	89092					0.08961045753380859
TPKMPGQSV	9	Unmodified	_TPKMPGQSV_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1;ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7472229003906	2	472.747127	943.479702	0.9775	0.00046211	-0.79827	-0.00037738	0.17923	8.473E-05	472.7465585488939	36.743	0.53132	36.743	36.474	37.005	0					35	13	3	0	0	0	0.49102	1	2948	2948		59.931	1.1488	1	1565600			80367	6329;13986	56049	56141	89093	89093					0.005701386457417357
TPKNPVKRKDL	11	Unmodified	_TPKNPVKRKDL_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	648.392578125	2	648.393336	1294.77212	1.3712	0.00088907	-2.4045	-0.0015591	-1.0333	-0.00067001	648.3917089448291	105.36	0.63876	105.36	105.12	105.76	0					41	15	4	0	0	0	1.0532	1	13524	13524		24.232	3.2849	1	1173700			80368	9361	56050	56142	89094	89094					0.13652414651232903
TPKNPWSM	8	Unmodified	_TPKNPWSM_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.78692626953125	2	480.73402	959.453487	-0.88651	-0.00042617	-2.5682	-0.0012346	-3.4547	-0.0016608	480.7324995293011	29.341	0.6615	29.341	29.112	29.773	0					27	16	2	0	0	0	0.027866	1	1838	1838		25.45	0	1	108450			80369	4443	56051	56143	89095	89095					-0.027861305257374624
TPKNRKVT	8	Unmodified	_TPKNRKVT_					0	0	0		ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2879333496094	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	0.96769	3	12026	11966;11978;12026		42.396	8.2236	1	51888000			80370	15103	56052	56144	89096;89097;89098	89098					0.08748582399982752
TPKNRKVT	8	Unmodified	_TPKNRKVT_					0	0	0		ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.287353515625	2	472.287808	942.561064	0.20114	9.4994E-05	-0.67758	-0.00032001	-0.47644	-0.00022502	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	1.0198	1	11943	11943		34.173	2.6427	1	52660000			80371	15103	56052	56144	89099	89099					0.08748582399982752
TPKNRKVT	8	Unmodified	_TPKNRKVT_					0	0	0		ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2879333496094	2	472.287808	942.561064	-0.12415	-5.8633E-05	-0.45206	-0.0002135	-0.57621	-0.00027214	472.28759371111266	94.222	2.3523	94.228	93.604	95.957	0.0059814					189	55	6	0	0	0	1.0198	4	11902	11902;11914;11938;11962		34.173	9.9698	1	53299000			80372	15103	56052	56144	89100;89101;89102;89103	89100					0.08748582399982752
TPKNRKVT	8	Unmodified	_TPKNRKVT_					0	0	0		ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2882080078125	2	472.287808	942.561064	-0.48925	-0.00023107	0.00055468	2.6197E-07	-0.4887	-0.00023081	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.0198	1	11635	11635		34.173	3.6689	1	45907000			80373	15103	56052	56144	89104	89104					0.08748582399982752
TPKNRKVT	8	Unmodified	_TPKNRKVT_					0	0	0		ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28765869140625	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	1.0198	2	11637	11637;11661		34.173	2.6427	1	42478000			80374	15103	56052	56144	89105;89106	89105					0.08748582399982752
TPKNRKVT	8	Unmodified	_TPKNRKVT_					0	0	0		ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.28778076171875	2	472.287808	942.561064	-0.32971	-0.00015572	-0.19839	-9.3697E-05	-0.5281	-0.00024942	472.287689544301	94.375	2.2798	94.227	93.609	95.889	-0.14771					198	52	7	0	0	0	1.0574	1	11598	11598		21.96	0	1	42351000			80375	15103	56052	56144	89107	89107					0.08748582399982752
TPKPPKPDPL	10	Unmodified	_TPKPPKPDPL_					0	0	0		nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3164672851562	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0997	1	11255	11255		32.751	2.1817	1	12792000			80376	10346	56053	56145	89108	89108					0.08222889028456848
TPKQPKEP	8	Unmodified	_TPKQPKEP_					0	0	0			REV__ENSG00000277399|ENST00000616987|GPR179	REV__ENSG00000277399|ENST00000616987|GPR179	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7505798339844	2	462.761092	923.507631	-0.5749	-0.00026604	1.1853	0.00054852	0.61043	0.00028248	462.7614430521239	50.309	1.093	50.309	49.582	50.675	0					50	31	3	0	0	0	0.027866	1	5192	5192		29.15	0	1	940580	+		80377	29204	56054	56146	89109	89109					0.04281784897466423
TPKQRITAS	9	Unmodified	_TPKQRITAS_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.29022216796875	2	501.290548	1000.56654	0.7613	0.00038163	-0.95491	-0.00047869	-0.19361	-9.7056E-05	501.28990286512953	98.13	1.7563	98.127	97.769	99.525	-0.0020752					83	40	4	0	0	0	0.97973	1	12466	12466		24.519	0.31644	1	1679000			80378	5156	56055	56147	89110	89110					0.06628261191781348
TPKQRITAS	9	Unmodified	_TPKQRITAS_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2903747558594	2	501.290548	1000.56654	0.34698	0.00017394	-0.62896	-0.00031529	-0.28198	-0.00014135	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.91321	1	10304	10304		31.53	1.0262	1	10557000			80379	5156	56055	56147	89111	89111					0.06628261191781348
TPKQRITAS	9	Unmodified	_TPKQRITAS_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2907409667969	2	501.290548	1000.56654	0.64996	0.00032582	-1.124	-0.00056346	-0.47405	-0.00023764	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.84115	1	10269	10269		36.447	3.6343	1	10571000			80380	5156	56055	56147	89112	89112					0.06628261191781348
TPKQTTTPL	9	Unmodified	_TPKQTTTPL_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7795715332031	2	493.779482	985.544411	1.9476	0.00096169	-1.8897	-0.00093312	0.057861	2.8571E-05	493.77832261532706	23.963	0.96573	23.782	23.495	24.461	-0.18089					34	21	2	0	0	0	0.42604	1	978	978		64.207	0	1	802510	+		80381	27860	56056	56148	89113	89113					0.0510603672336174
TPKRQLEA	8	Unmodified	_TPKRQLEA_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.78228759765625	2	471.771991	941.529429	-0.14708	-6.939E-05	2.9087	0.0013723	2.7616	0.0013029	471.7733097171169	29.215	0.58216	29.219	29.129	29.712	0.0031376					23	14	3	0	0	0	0.027866	1	1787	1787		44.117	0	1	557350	+		80382	19108	56057	56149	89114	89114					0.056325896460293734
TPKSFKRL	8	Unmodified	_TPKSFKRL_					0	0	0			REV__ENSG00000137806|ENST00000260361|NDUFAF1	REV__ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.75799560546875	2	488.800552	975.58655	-0.67754	-0.00033118	-0.27483	-0.00013434	-0.95237	-0.00046552	488.80011415450537	43.487	0.61782	43.347	42.991	43.609	-0.13929					24	16	2	0	0	0	0.027866	1	4036	4036		76.774	37.753	1	96684	+		80383	23783	56058	56150	89115	89115					0.0977805692241418
TPKSFKRL	8	Unmodified	_TPKSFKRL_					0	0	0			REV__ENSG00000137806|ENST00000260361|NDUFAF1	REV__ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7586364746094	2	488.800552	975.58655	-0.068686	-3.3574E-05	-1.1603	-0.00056713	-1.2289	-0.00060071	488.7997169474587	43.407	0.65334	43.438	43.046	43.7	0.030827					30	17	2	0	0	0	0.027866	1	3982	3982		76.774	27.563	1	178020	+		80384	23783	56058	56150	89116	89116					0.0977805692241418
TPKTRRPLLL	10	Unmodified	_TPKTRRPLLL_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|143|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|143|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|143|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	597.8565673828125	2	597.88769	1193.76083	-1.0439	-0.00062411	1.2161	0.00072708	0.17222	0.00010297	597.8861833845624	92.716	0.2128	92.708	92.516	92.729	-0.0082932					5	4	2	0	0	0	0.03519	1	11715	11715		19.104	0	1	22901			80385	17872	56059	56151	89117	89117					0.17169637347751632
TPKTVRKN	8	Unmodified	_TPKTVRKN_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.28790283203125	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	1.0365	1	12014	12014		31.53	6.0796	1	51888000			80386	8729	56060	56152	89118	89118					0.0874858239999412
TPKTVRKN	8	Unmodified	_TPKTVRKN_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.28790283203125	2	472.287808	942.561064	0.20114	9.4994E-05	-0.67758	-0.00032001	-0.47644	-0.00022502	472.28747066881914	94.193	2.2708	94.193	93.627	95.898	-0.00023651					188	53	6	0	0	0	1.0198	4	11931	11931;11955;11967;12016		34.173	3.6689	1	52660000			80387	8729	56060	56152	89119;89120;89121;89122	89119					0.0874858239999412
TPKTVRKN	8	Unmodified	_TPKTVRKN_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2876892089844	2	472.287808	942.561064	-0.48925	-0.00023107	0.00055468	2.6197E-07	-0.4887	-0.00023081	472.28780064834285	94.325	2.3214	94.188	93.53	95.852	-0.13779					191	53	6	0	0	0	1.0365	2	11611	11611;11623		31.53	4.8369	1	45907000			80388	8729	56060	56152	89123;89124	89123					0.0874858239999412
TPKTVRKN	8	Unmodified	_TPKTVRKN_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28778076171875	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.98759	3	11602	11602;11649;11698		39.253	5.1592	1	42478000			80389	8729	56060	56152	89125;89126;89127	89125					0.0874858239999412
TPKVAIIQTY	10	Unmodified	_TPKVAIIQTY_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3302612304688	2	567.331882	1132.64921	-1.643	-0.00093215	-2.353	-0.0013349	-3.996	-0.0022671	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	1.0344	3	11759	11662;11724;11759		41.427	5.9412	1	14057000	+		80390	23846	56061	56153	89128;89129;89130	89130					0.0881915819995811
TPKVAIIQTY	10	Unmodified	_TPKVAIIQTY_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.329833984375	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.1088	1	11311	11311		31.53	3.6476	1	4116000	+		80391	23846	56061	56153	89131	89131					0.0881915819995811
TPKVAIIQTY	10	Unmodified	_TPKVAIIQTY_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3290405273438	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.0909	1	11177	11177		33.922	4.7516	1	4134200	+		80392	23846	56061	56153	89132	89132					0.0881915819995811
TPKVAIIQTY	10	Unmodified	_TPKVAIIQTY_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3299560546875	2	567.331882	1132.64921	-0.25865	-0.00014674	-2.6582	-0.0015081	-2.9169	-0.0016548	567.3302396632416	88.151	1.3013	87.981	87.036	88.338	-0.17053					97	31	4	0	0	0	1.0236	1	10738	10738		42.864	2.0861	1	1743200	+		80393	23846	56061	56153	89133	89133					0.0881915819995811
TPKVAIIQTY	10	Unmodified	_TPKVAIIQTY_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3299560546875	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.1081	2	11478	11127;11478		31.634	1.3165	1	19210000	+		80394	23846	56061	56153	89134;89135	89135					0.0881915819995811
TPKVHPRGKN	10	Unmodified	_TPKVHPRGKN_					0	0	0			REV__DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	REV__DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3298950195312	2	567.330539	1132.64652	-0.25341	-0.00014377	-0.9081	-0.00051519	-1.1615	-0.00065896	567.3299706706163	102.52	0.73519	102.52	102.24	102.97	0.0073471					42	17	4	0	0	0	1.0992	1	13088	13088		32.812	0.85756	1	1033600	+		80395	19719	56062	56154	89136	89136					0.0855074758567298
TPKVHPRGKN	10	Unmodified	_TPKVHPRGKN_					0	0	0			REV__DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	REV__DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3301391601562	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	1.118	1	11404	11404		30.318	0	1	18337000	+		80396	19719	56062	56154	89137	89137					0.0855074758567298
TPKVKNQL	8	Unmodified	_TPKVKNQL_					0	0	0		ENST00000473649.1_1_7:142961996-142965927:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2842102050781	2	464.284734	926.554916	-0.24436	-0.00011345	-0.40772	-0.0001893	-0.65207	-0.00030275	464.2844731676919	24.815	0.90627	24.6	24.336	25.243	-0.21511					35	20	2	0	0	0	0.74904	1	1126	1126		63.306	0	1	3315900			80397	10000	56063	56155	89138	89138					0.08870064168456793
TPKVKNQL	8	Unmodified	_TPKVKNQL_					0	0	0		ENST00000473649.1_1_7:142961996-142965927:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.28460693359375	2	464.284734	926.554916	-0.13653	-6.3389E-05	-0.28926	-0.0001343	-0.42579	-0.00019769	464.2845388068687	24.578	0.82186	24.403	24.129	24.95	-0.17484					31	18	2	0	0	0	0.68535	1	1078	1078		68.485	9.7027	1	3233200			80398	10000	56063	56155	89139	89139					0.08870064168456793
TPKVKNQL	8	Unmodified	_TPKVKNQL_					0	0	0		ENST00000473649.1_1_7:142961996-142965927:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	ENST00000473649.1_1_7:142961996-142965927:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.2842102050781	2	464.284734	926.554916	1.9392	0.00090036	-2.668	-0.0012387	-0.72874	-0.00033834	464.28349537622915	24.681	0.99345	24.5	24.198	25.191	-0.18089					43	22	4	0	0	0	0.26064	2	1078	1066;1078		128.86	43.946	1	2468300			80399	10000	56063	56155	89140;89141	89141					0.08870064168456793
TPKVVDIPTY	10	Unmodified	_TPKVVDIPTY_					0	0	0		ENSG00000143001|ENST00000371268|TMEM61	ENSG00000143001|ENST00000371268|TMEM61	ENSG00000143001|ENST00000371268|TMEM61	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	566.816064	1131.61758	-0.059609	-3.3787E-05	-3.2638	-0.00185	-3.3234	-0.0018838	567.3145034533005	93.473	0.21867	93.329	93.264	93.483	-0.1441					6	4	2	0	0	0	0.03519	1	11480	11480		32.812	13.452	1	24651			80400	5601	56064	56156	89142	89142					0.057031654459933634
TPKWLILS	8	Unmodified	_TPKWLILS_					0	0	0			REV__ENSG00000213949|ENST00000282588|ITGA1	REV__ENSG00000213949|ENST00000282588|ITGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.28955078125	2	479.292028	956.569503	-0.4297	-0.00020595	-4.3463	-0.0020831	-4.776	-0.0022891	479.28991002785864	25.738	1.0022	25.704	25.432	26.434	-0.034395					66	23	5	0	0	0	0.6248	1	1216	1216		73.975	6.4811	1	7392500	+		80401	28759	56065	56157	89143	89143					0.08948136316621458
TPKYSQVL	8	Unmodified	_TPKYSQVL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.2632141113281	2	468.263468	934.512382	-0.65233	-0.00030546	0.030277	1.4178E-05	-0.62205	-0.00029129	468.26334265396395	43.685	0.81184	43.448	43.099	43.911	-0.23737					49	21	3	0	0	0	0.91956	1	4019	4019		49.442	3.4693	1	5523700			80402	1498	56066	56158	89144	89144					0.04250669040231969
TPLAQVRA	8	Unmodified	_TPLAQVRA_					0	0	0			REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7406311035156	2	428.255977	854.497401	0.80233	0.0003436	0.41902	0.00017945	1.2213	0.00052305	428.25588563187074	22.615	0.61016	22.413	21.951	22.561	-0.20199					18	12	2	0	0	0	0.027866	1	784	784		42.396	19.354	1	62079	+		80403	23914	56067	56159	89145	89145					0.06433221962890912
TPLARLPGP	9	Unmodified	_TPLARLPGP_					0	0	0			REV__ENST00000371655.3_1_1:52442766-52456347:-|nuORF	REV__ENST00000371655.3_1_1:52442766-52456347:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.279296875	2	461.279452	920.544351	0.88372	0.00040764	-0.77719	-0.0003585	0.10653	4.914E-05	461.27883874741536	43.066	1.0149	43.097	42.902	43.917	0.030827					64	27	4	0	0	0	0.23085	1	3943	3943		84.916	8.1414	1	4536200	+		80404	31172	56068	56160	89146	89146					0.08090081514035319
TPLARLPGP	9	Unmodified	_TPLARLPGP_					0	0	0			REV__ENST00000371655.3_1_1:52442766-52456347:-|nuORF	REV__ENST00000371655.3_1_1:52442766-52456347:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	461.279452	920.544351	-0.28133	-0.00012977	0.4832	0.00022289	0.20187	9.3119E-05	461.2794181721997	43.032	1.0132	43.032	42.823	43.836	0	-0.017129	0.00043255	NaN	84.916	69	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4277000	+		80405	31172	56068	56160							0.08090081514035319
TPLARLPGP	9	Unmodified	_TPLARLPGP_					0	0	0			REV__ENST00000371655.3_1_1:52442766-52456347:-|nuORF	REV__ENST00000371655.3_1_1:52442766-52456347:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	461.279452	920.544351	0.88372	0.00040764	-0.77719	-0.0003585	0.10653	4.914E-05	461.27883874741536	43.066	1.0149	43.097	42.902	43.917	0.030827	0.047834	-0.00073023	NaN	84.916	64	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4536200	+		80406	31172	56068	56160							0.08090081514035319
TPLCDRVL	8	Unmodified	_TPLCDRVL_					0	0	0			REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	REV__RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.24822998046875	2	458.74967	915.484787	-0.81883	-0.00037564	1.6962	0.00077811	0.87732	0.00040247	458.7504351465362	30.655	0.70483	30.655	30.426	31.131	0					34	16	3	0	0	0	0.027866	1	1995	1995		49.442	2.6751	1	567430	+		80407	28092	56069	56161	89147	89147					0.023664425083552487
TPLCIELLI	9	Unmodified	_TPLCIELLI_					0	0	0			REV__ENSG00000108506|ENST00000251334|INTS2	REV__ENSG00000108506|ENST00000251334|INTS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2799987792969	2	507.798829	1013.5831	0.0034163	1.7348E-06	-1.0328	-0.00052443	-1.0293	-0.0005227	507.800434262574	48.128	0.47572	47.942	47.787	48.263	-0.18684					23	12	3	0	0	0	0.024535	1	4762	4762		18.324	6.1176	1	154100	+		80408	21739	56070	56162	89148	89148					0.07685626033537574
TPLFNPVVY	9	Unmodified	_TPLFNPVVY_					0	0	0		ENSG00000182634|ENST00000641585|OR10G7	ENSG00000182634|ENST00000641585|OR10G7	ENSG00000182634|ENST00000641585|OR10G7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2860717773438	2	525.286943	1048.55933	0.34077	0.000179	-4.2238	-0.0022187	-3.8831	-0.0020397	525.2845914334172	53.171	0.9477	52.913	52.564	53.512	-0.25839					54	24	5	0	0	0	0.62163	1	5563	5563		51.335	1.8939	1	2027900			80409	9150	56071	56163	89149	89149					0.03699528591369017
TPLGPKVV	8	Unmodified	_TPLGPKVV_					0	0	0			REV__ENSG00000184985|ENST00000507866|SORCS2	REV__ENSG00000184985|ENST00000507866|SORCS2	MSMS	OPSCC_40_ClassI_Rep-2	5	405.76397705078125	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.73	1	113.58	113.08	114.08	-0.14448								0	0	0	1.242	1	13696	13696		9.4706	0	1		+		80410	27716	56072	56164	89150	89150					0.08871891736748694
TPLGTKQDAPG	11	Unmodified	_TPLGTKQDAPG_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.3186645507812	2	542.785296	1083.55604	-0.34122	-0.00018521	3.5475	0.0019255	3.2063	0.0017403	542.786230282897	58.957	0.28613	59.043	58.884	59.171	0.085682					11	7	2	0	0	0	0.024747	1	6615	6615		24.519	0	1	117130	+		80411	19108	56073	56165	89151	89151					0.017602337466996687
TPLIAGEGGL	10	Unmodified	_TPLIAGEGGL_					0	0	0			REV__ENST00000491733.2_1_8:21958038-21958496:+|nuORF	REV__ENST00000491733.2_1_8:21958038-21958496:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2565002441406	2	464.260925	926.507297	1.0733	0.00049828	-0.39404	-0.00018294	0.67923	0.00031534	464.26047729473134	59.67	0.69537	59.67	59.37	60.066	0					36	18	3	0	0	0	0.03519	1	6782	6782		14.865	0	1	915810	+		80412	33730	56074	56166	89152	89152					0.04110365177632502
TPLIEDKP	8	Unmodified	_TPLIEDKP_					0	0	0			REV__nc|ENSG00000149273|P23396-2|RPS3;REV__ENST00000433853.1_1_3:183867695-183868220:+|nuORF	REV__nc|ENSG00000149273|P23396-2|RPS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.79742431640625	2	456.755475	911.496398	-1.076	-0.00049147	2.8328	0.0012939	1.7568	0.00080243	456.7564486680148	65.227	0.41427	64.956	64.713	65.127	-0.27149					19	10	2	0	0	0	0.027866	1	7675	7675		40.573	17.53	1	163940	+		80413	36774;32413	56075	56167	89153	89153					0.03710962803336315
TPLKELTEV	9	Unmodified	_TPLKELTEV_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2988891601562	2	515.294965	1028.57538	-0.13206	-6.8052E-05	0.080364	4.1411E-05	-0.051699	-2.664E-05	515.2948357165151	106.85	0.84128	106.73	106.51	107.35	-0.1238					77	28	5	0	0	0	0.56934	1	13327	13327		54.776	4.7518	1	1641300	+		80414	28304	56076	56168	89154	89154					0.062231900375991245
TPLKPGEHQ	9	Unmodified	_TPLKPGEHQ_					0	0	0			REV__ENST00000466521.5_1_16:30127991-30128572:-|nuORF	REV__ENST00000466521.5_1_16:30127991-30128572:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7694396972656	2	503.769448	1005.52434	-0.36997	-0.00018638	0.11308	5.6968E-05	-0.25689	-0.00012941	503.7694368267307	43.17	0.62029	43.031	42.773	43.393	-0.13929					41	16	3	0	0	0	0.5973	1	4018	4018		52.937	1.4089	1	2977900	+		80415	33040	56077	56169	89155	89155					0.021802857834245515
TPLKSVKT	8	Unmodified	_TPLKSVKT_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.8751220703125	2	437.273835	872.533118	0.042819	1.8723E-05	0.078638	3.4386E-05	0.12146	5.311E-05	437.2737248856812	42.255	0.64931	42.122	41.953	42.602	-0.1322					23	18	2	0	0	0	0.027866	1	3911	3911		17.365	7.0997	1	121010	+		80416	33403	56078	56170	89156	89156					0.0917525941989652
TPLKSVKT	8	Unmodified	_TPLKSVKT_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.273835	872.533118	0.50133	0.00021922	-0.5538	-0.00024216	-0.052465	-2.2941E-05	437.27346593685206	42.147	0.33471	42.147	41.954	42.289	0	-0.10275	-0.00052628	NaN	6.7355	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108660	+		80417	33403	56078	56170							0.0917525941989652
TPLKSVKT	8	Unmodified	_TPLKSVKT_					0	0	0			REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	437.273835	872.533118	0.24011	0.00010499	-0.16259	-7.1095E-05	0.077524	3.3899E-05	437.2735894121619	42.149	0.68744	42.175	41.993	42.68	0.026012	-0.07473	-0.00018415	NaN	6.7355	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120610	+		80418	33403	56078	56170							0.0917525941989652
TPLKVLEEW	9	Unmodified	_TPLKVLEEW_					0	0	0		ENST00000422590.6_1_1:231829618-232144897:+|nuORF;ENSG00000162946|ENST00000439617|DISC1	ENST00000422590.6_1_1:231829618-232144897:+|nuORF	ENST00000422590.6_1_1:231829618-232144897:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2593383789062	2	557.810782	1113.60701	0.32995	0.00018405	-3.6127	-0.0020152	-3.2827	-0.0018311	558.3095976977853	85.146	0.24468	85.008	84.868	85.113	-0.13753					7	5	2	0	0	0	0.024427	1	10309	10309		26.693	6.6961	1	41509			80419	7016	56079	56171	89157	89157					0.05475182791565203
TPLLFNFF	8	Unmodified	_TPLLFNFF_					0	0	0			REV__ENST00000579111.5_1_18:22902106-22925248:-|nuORF	REV__ENST00000579111.5_1_18:22902106-22925248:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7163391113281	2	499.770929	997.527304	0.1247	6.232E-05	-2.0629	-0.001031	-1.9382	-0.00096866	499.7688355761035	71.085	0.44478	70.813	70.614	71.059	-0.27185					15	9	2	0	0	0	0.027866	1	8304	8304		25.45	0	1	159300	+		80420	35501	56080	56172	89158	89158					0.028441609082278774
TPLLFNFF	8	Unmodified	_TPLLFNFF_					0	0	0			REV__ENST00000579111.5_1_18:22902106-22925248:-|nuORF	REV__ENST00000579111.5_1_18:22902106-22925248:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.770929	997.527304	-0.072181	-3.6074E-05	-3.9477	-0.001973	-4.0199	-0.002009	499.7686056597771	71.037	0.30569	70.78	70.607	70.913	-0.25712	0.031916	-0.0005201	NaN	25.45	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113660	+		80421	35501	56080	56172							0.028441609082278774
TPLLHAELL	9	Unmodified	_TPLLHAELL_					0	0	0			REV__ENST00000343450.2_1_3:9834214-9834259:-|nuORF	REV__ENST00000343450.2_1_3:9834214-9834259:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7694396972656	2	503.800217	1005.58588	-0.80181	-0.00040395	-1.0785	-0.00054334	-1.8803	-0.00094729	503.7993365342235	43.667	0.50922	43.522	43.094	43.604	-0.14471					16	13	2	0	0	0	0.024205	1	4018	4018		44.117	8.9648	1	74478	+		80422	30666	56081	56173	89159	89159					0.08331217482702868
TPLLHAELL	9	Unmodified	_TPLLHAELL_					0	0	0			REV__ENST00000343450.2_1_3:9834214-9834259:-|nuORF	REV__ENST00000343450.2_1_3:9834214-9834259:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	503.800217	1005.58588	0.19235	9.6905E-05	-1.3338	-0.00067196	-1.1414	-0.00057506	503.79932946742946	43.544	0.14341	43.575	43.45	43.593	0.030827	0.026651	-8.8915E-05	NaN	44.117	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89630	+		80423	30666	56081	56173							0.08331217482702868
TPLLRISQ	8	Unmodified	_TPLLRISQ_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant;nc|ENSG00000183914|Q9P225-3|DNAH2	ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-3|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.25665283203125	2	464.284734	926.554916	0.88153	0.00040928	-1.5969	-0.00074143	-0.71539	-0.00033214	464.28358122621245	59.199	0.4079	59.285	59.171	59.579	0.085686					15	10	2	0	0	0	0.027866	1	6669	6669		58.782	0	1	131450			80424	9292;18581	56082	56174	89160	89160					0.08870064168456793
TPLLRISQ	8	Unmodified	_TPLLRISQ_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.F4075Sfs*87|1|0.41|ENSG00000183914|chr17:7830831-7830831|T/-|frameshift_variant;DNAH2|p.S1741Lfs*46|1|0.04|ENSG00000183914|chr17:7777605-7777606|-/TTCTGAATACTTAT|frameshift_variant;nc|ENSG00000183914|Q9P225-3|DNAH2	ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-3|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.28448486328125	2	464.284734	926.554916	-0.13653	-6.3389E-05	-0.28926	-0.0001343	-0.42579	-0.00019769	464.2845388068687	24.578	0.82186	24.403	24.129	24.95	-0.17484					31	18	2	0	0	0	0.73796	1	1090	1090		64.207	0.901	1	3233200			80425	9292;18581	56082	56174	89161	89161					0.08870064168456793
TPLLSAKEAF	10	Unmodified	_TPLLSAKEAF_					0	0	0			REV__ENST00000473891.1_1_1:26013020-26085338:+|nuORF	REV__ENST00000473891.1_1_1:26013020-26085338:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.8014526367188	2	538.802957	1075.59136	0.59888	0.00032268	-3.154	-0.0016994	-2.5551	-0.0013767	538.8012117427492	18.212	0.64061	18.056	17.805	18.445	-0.15637					34	12	4	0	0	0	1.0508	1	269	269		39.253	0.44669	1	1015600	+		80426	33258	56083	56175	89162	89162					0.05658896274508152
TPLRKEVL	8	Unmodified	_TPLRKEVL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.3004150390625	2	478.300384	954.586216	0.17272	8.2611E-05	-0.43338	-0.00020729	-0.26066	-0.00012468	478.30008272055136	33.334	0.60352	33.103	32.752	33.356	-0.23107					45	14	4	0	0	0	0.42912	2	2354	2354;2364		93.195	1.0048	1	3806000			80427	5872	56084	56176	89163;89164	89163					0.10710637202555517
TPLRKEVL	8	Unmodified	_TPLRKEVL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.3004455566406	2	478.300384	954.586216	-0.27503	-0.00013155	-0.011226	-5.3692E-06	-0.28625	-0.00013692	478.3002707499594	33.313	0.78069	33.113	32.813	33.594	-0.20019					45	19	4	0	0	0	0.27613	3	2374	2351;2362;2374		122.18	42.237	1	4868800			80428	5872	56084	56176	89165;89166;89167	89167					0.10710637202555517
TPLRKEVL	8	Unmodified	_TPLRKEVL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.3004150390625	2	478.300384	954.586216	-0.70208	-0.0003358	0.3795	0.00018152	-0.32258	-0.00015429	478.30047083245205	33.303	0.56231	33.137	32.839	33.401	-0.16565					43	13	4	0	0	0	0.29644	3	2356	2344;2356;2370		113.41	42.116	1	4460400			80429	5872	56084	56176	89168;89169;89170	89169					0.10710637202555517
TPLRQLGR	8	Unmodified	_TPLRQLGR_					0	0	0			REV__ENST00000461778.5_1_11:47279593-47280675:+|nuORF	REV__ENST00000461778.5_1_11:47279593-47280675:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.77752685546875	2	470.787976	939.561398	0.5068	0.00023859	1.3212	0.000622	1.828	0.0008606	470.78841033751377	28.856	0.39984	28.937	28.657	29.056	0.080811					14	9	2	0	0	0	0.027866	1	1656	1656		11.511	5.1984	1	72660	+		80430	32677	56085	56177	89171	89171					0.08920002119862147
TPLSTPSII	9	Unmodified	_TPLSTPSII_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2879638671875	2	464.771126	927.527698	-0.29462	-0.00013693	1.0039	0.00046657	0.70925	0.00032964	464.77127849281106	76.186	0.42574	75.914	75.699	76.125	-0.27266					19	10	2	0	0	0	0.024427	1	9034	9034		42.396	5.237	1	269160			80431	18650	56086	56178	89172	89172					0.06103535837439722
TPLTFGAPVT	10	Unmodified	_TPLTFGAPVT_					0	0	0			REV__nc|ENSG00000146839|Q9Y493-5|ZAN	REV__nc|ENSG00000146839|Q9Y493-5|ZAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.75714111328125	2	502.276575	1002.5386	-0.90445	-0.00045428	-4.3285	-0.0021741	-5.233	-0.0026284	502.27433641832505	43.721	0.54632	43.721	43.44	43.987	0					37	14	3	0	0	0	0.03519	1	4089	4089		31.53	9.8275	1	1084700	+		80432	24514	56087	56179	89173	89173					0.03742938211712499
TPLTNMSFSTT	11	Unmodified	_TPLTNMSFSTT_					0	0	0		nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.5272521972656	3	400.525273	1198.55399	1.2683	0.00050798	3.4053	0.0013639	4.6736	0.0018719	400.52656070945164	18.299	0.644	18.095	17.767	18.411	-0.20371					21	12	2	0	0	0	1.0563	1	276	276		23.378	1.6922	1	47226			80433	7983	56088	56180	89174	89174					-0.037345630533991425
TPLTRMPL	8	Unmodified	_TPLTRMPL_					0	0	0		nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2879943847656	2	464.767863	927.521173	-0.17458	-8.114E-05	-3.6138	-0.0016796	-3.7884	-0.0017607	464.7660548270165	76.271	0.80344	76.103	75.932	76.735	-0.16854					29	18	2	0	0	0	0.027866	1	9016	9016		45.952	3.4775	1	140030			80434	7983	56089	56181	89175	89175					0.05451319405051436
TPLTSRRI	8	Unmodified	_TPLTSRRI_					0	0	0			REV__ENST00000488252.6_1_19:19287863-19288136:-|nuORF	REV__ENST00000488252.6_1_19:19287863-19288136:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2880554199219	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	1.0574	1	12076	12076		25.45	1.2474	1	51888000	+		80435	33637	56090	56182	89176	89176					0.08748582399982752
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(88)GPGRTV	0	0	1		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.237060546875	2	466.236927	930.459301	-0.9041	-0.00042152	0.71167	0.00033181	-0.19243	-8.9716E-05	466.2372265126348	28.1	0.95067	28.1	27.58	28.53	0					76	23	4	0	0	0	0.20652	5	1619	1579;1591;1608;1619;1631		88.177	24.912	1	5606700			80436	3596	56091	56183	89177;89178;89179;89180;89181	89180		137			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(99)GPGRTV	0	0	1		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.2400817871094	2	466.236927	930.459301	-1.3273	-0.00061883	2.4715	0.0011523	1.1442	0.00053347	466.2380910761371	29.277	1.5672	29.277	28.49	30.057	0					124	38	4	0	0	0	0.15366	7	1769	1676;1688;1699;1733;1745;1758;1769		98.629	43.853	1	6177700			80437	3596	56091	56183	89182;89183;89184;89185;89186;89187;89188	89188		137			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(100)GPGRTV	0	0	1		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.2369384765625	2	466.236927	930.459301	-0.31864	-0.00014856	0.052969	2.4696E-05	-0.26567	-0.00012387	466.23692280608145	28.061	1.0307	28.057	27.509	28.54	-0.0042019					74	25	4	0	0	0	0.12914	5	1577	1559;1577;1588;1615;1628		104.06	39.85	1	5780600			80438	3596	56091	56183	89189;89190;89191;89192;89193	89190		137			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(82)GPGRTV	0	0	1		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.23663330078125	2	466.236927	930.459301	-0.40233	-0.00018758	1.6486	0.00076862	1.2462	0.00058104	466.23771639724754	29.224	1.6953	29.228	28.381	30.076	0.0031357					131	41	4	0	0	0	0.2508	4	1701	1690;1701;1714;1742		82.241	23.459	1	5444900			80439	3596	56091	56183	89194;89195;89196;89197	89195		137			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(77)GPGRTV	0	0	1		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.23712158203125	2	466.236927	930.459301	0.14939	6.9651E-05	-0.45217	-0.00021082	-0.30278	-0.00014117	466.2366673058719	27.767	0.93204	27.848	27.357	28.289	0.081291					78	23	4	0	0	0	0.28753	5	1495	1477;1495;1518;1529;1540		77.318	25.982	1	5483800			80440	3596	56091	56183	89198;89199;89200;89201;89202	89199		137			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(77)GPGRTV	0	0	1		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.237060546875	2	466.236927	930.459301	0.51398	0.00023964	0.50636	0.00023608	1.0203	0.00047572	466.2371934475637	29.04	1.597	29.119	28.205	29.802	0.078344					126	39	4	0	0	0	0.28753	6	1637	1603;1616;1625;1637;1662;1692		77.318	27.231	1	6036700			80441	3596	56091	56183	89203;89204;89205;89206;89207;89208	89206		137			-0.008710320140608019
TPMGPGRTV	9	Unmodified	_TPMGPGRTV_					0	0	0		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.23956298828125	2	458.23947	914.464386	-0.1225	-5.6132E-05	-0.29011	-0.00013294	-0.4126	-0.00018907	458.2393417502674	33.678	1.1937	33.678	33.321	34.515	0					95	31	4	0	0	0	0.041068	5	2442	2431;2442;2453;2465;2479		132.76	55.911	1	11923000			80442	3596	56091	56184	89209;89210;89211;89212;89213	89210					0.003732718485480291
TPMGPGRTV	9	Unmodified	_TPMGPGRTV_					0	0	0		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.23956298828125	2	458.23947	914.464386	-0.36585	-0.00016765	0.00067242	3.0813E-07	-0.36518	-0.00016734	458.23946374975316	33.51	1.744	33.516	33.189	34.933	0.0066261					109	45	5	0	0	0	0.025498	5	2419	2397;2407;2419;2431;2446		145.16	70.878	1	14824000			80443	3596	56091	56184	89214;89215;89216;89217;89218	89216					0.003732718485480291
TPMGPGRTV	9	Unmodified	_TPMGPGRTV_					0	0	0		ENST00000489586.6_1_1:236706790-236711458:+|nuORF;ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	458.2395935058594	2	458.23947	914.464386	0.62601	0.00028686	-0.85867	-0.00039347	-0.23266	-0.00010661	458.2390887343516	33.449	1.8839	33.505	33.105	34.989	0.056572					106	48	5	0	0	0	0.053401	5	2346	2346;2356;2368;2380;2395		127.46	58.675	1	11030000			80444	3596	56091	56184	89219;89220;89221;89222;89223	89219					0.003732718485480291
TPMLVTLV	8	Unmodified	_TPMLVTLV_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.8751220703125	2	437.259339	872.504126	-0.084958	-3.7149E-05	4.4427	0.0019426	4.3577	0.0019054	437.2610991033186	42.016	1.1047	41.884	41.387	42.491	-0.13219					59	31	3	0	0	0	0.027866	1	3911	3911		25.45	8.977	1	751030	+		80445	29019	56092	56185	89224	89224					0.0627739879927276
TPMLVTLV	8	Unmodified	_TPMLVTLV_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	437.259339	872.504126	0.45162	0.00019747	3.9646	0.0017336	4.4162	0.001931	437.26090554873764	41.809	0.79335	41.809	41.36	42.154	0	-0.076325	-0.00011517	NaN	12.207	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775070	+		80446	29019	56092	56185							0.0627739879927276
TPMLVTLV	8	Unmodified	_TPMLVTLV_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	437.259339	872.504126	0.26521	0.00011597	3.9021	0.0017062	4.1673	0.0018222	437.26087899195596	41.938	0.92575	41.964	41.501	42.427	0.026012	0.078105	-0.00016979	NaN	12.207	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780640	+		80447	29019	56092	56185							0.0627739879927276
TPMLVTLVL	9	Unmodified	_TPMLVTLVL_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.7795715332031	2	493.801371	985.58819	1.9717	0.00097361	-4.4655	-0.0022051	-2.4938	-0.0012315	493.79977894124005	24.051	0.52953	23.87	23.626	24.156	-0.18089					16	11	2	0	0	0	0.024262	1	978	978		57.811	21.365	1	163160	+		80448	29019	56093	56186	89225	89225					0.09481929896162455
TPMPSNHPP	9	Oxidation (M)	_TPM(Oxidation (M))PSNHPP_		TPM(1)PSNHPP		TPM(80)PSNHPP	0	0	1		ENST00000374303.6_1_1:26158989-26159046:+|nuORF	ENST00000374303.6_1_1:26158989-26159046:+|nuORF	ENST00000374303.6_1_1:26158989-26159046:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2655029296875	2	497.226559	992.438566	-0.87593	-0.00043554	0.52013	0.00025862	-0.3558	-0.00017691	497.2265997976843	38.099	1.2845	38.016	37.323	38.607	-0.082516					45	35	2	0	0	0	0.023061	1	3063	3063		79.713	31.797	1	142130			80449	13110	56094	56187	89226	89226		487			-0.05795622393736721
TPMPSNHPP	9	Oxidation (M)	_TPM(Oxidation (M))PSNHPP_					0	0	1		ENST00000374303.6_1_1:26158989-26159046:+|nuORF	ENST00000374303.6_1_1:26158989-26159046:+|nuORF	ENST00000374303.6_1_1:26158989-26159046:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.226559	992.438566	-1.451	-0.00072147	1.1402	0.00056693	-0.31081	-0.00015454	497.2268237875671	38.362	1.0043	38.389	37.918	38.923	0.027279	0.1863	0.00025146	NaN	79.713	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153690			80450	13110	56094	56187				487			-0.05795622393736721
TPNENRQKL	9	Unmodified	_TPNENRQKL_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2962036132812	2	550.296362	1098.57817	-1.086	-0.00059764	0.81617	0.00044913	-0.26988	-0.00014851	550.2967816240955	21.273	0.77645	21.273	20.9	21.676	0					45	15	4	0	0	0	0.48817	2	648	648;663		60.118	7.1816	1	784400			80451	8830	56095	56188	89227;89228	89227					0.03282458215130646
TPNENRQKL	9	Unmodified	_TPNENRQKL_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.2963256835938	2	550.296362	1098.57817	-0.85585	-0.00047097	0.5836	0.00032115	-0.27225	-0.00014982	550.2966199851545	21.369	0.86917	21.279	20.814	21.683	-0.090092					44	17	4	0	0	0	0.22902	2	649	638;649		85.161	30.385	1	896120			80452	8830	56095	56188	89229;89230	89230					0.03282458215130646
TPNENRQKL	9	Unmodified	_TPNENRQKL_					0	0	0		ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	ENSG00000178691|ENST00000322652|SUZ12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.296362	1098.57817	-0.40804	-0.00022454	-1.4765	-0.0008125	-1.8845	-0.001037	550.295795928366	21.243	0.44184	21.314	21.057	21.499	0.071487	0.025625	-0.0023867	NaN	85.161	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23752			80453	8830	56095	56188							0.03282458215130646
TPNKPSRTSM	10	Oxidation (M)	_TPNKPSRTSM(Oxidation (M))_		TPNKPSRTSM(1)		TPNKPSRTSM(75)	0	0	1		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.78271484375	2	567.78223	1133.54991	2.9078	0.001651	-2.7501	-0.0015615	0.15769	8.9532E-05	567.7805238134418	17.374	0.59455	17.374	17.102	17.697	0					28	11	3	0	0	0	0.61732	1	152	152		75.043	14.925	1	202810			80454	8466	56096	56189	89231	89231		351			-0.011526077564667503
TPNKRALTG	9	Unmodified	_TPNKRALTG_					0	0	0			REV__ENST00000452284.1_1_22:21356738-21362956:+|nuORF	REV__ENST00000452284.1_1_22:21356738-21362956:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27752685546875	2	479.277441	956.540328	0.51465	0.00024666	-0.27369	-0.00013117	0.24097	0.00011549	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.87448	1	10389	10389		34.173	5.023	1	4752300	+		80455	32347	56097	56190	89232	89232					0.060319920203255606
TPNVKNKL	8	Unmodified	_TPNVKNKL_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2768249511719	2	457.276909	912.539266	0.18802	8.5978E-05	0.4048	0.00018511	0.59282	0.00027108	457.2769569885153	25.445	0.67345	25.273	24.95	25.623	-0.17151					28	15	3	0	0	0	0.71833	1	1182	1182		65.803	7.0212	1	996050			80456	5644	56098	56191	89233	89233					0.07949777651424483
TPNVKNKL	8	Unmodified	_TPNVKNKL_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	457.276909	912.539266	-0.48776	-0.00022304	1.115	0.00050985	0.62722	0.00028681	457.2772332030602	25.606	0.58098	25.379	25.148	25.729	-0.22683	0.096338	0.00028999	NaN	65.803	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1096300			80457	5644	56098	56191							0.07949777651424483
TPNVKNKL	8	Unmodified	_TPNVKNKL_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1;nc|ENSG00000143379|Q15047-2|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	457.276909	912.539266	-0.23079	-0.00010554	0.78846	0.00036055	0.55767	0.00025501	457.27713088774146	25.367	0.63	25.196	24.912	25.542	-0.17078	-0.086707	-8.6267E-06	NaN	65.803	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	936930			80458	5644	56098	56191							0.07949777651424483
TPNVMMISK	9	Unmodified	_TPNVMMISK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.259033203125	2	510.764463	1019.51437	-0.69552	-0.00035525	3.3524	0.0017123	2.6568	0.001357	510.7660660767359	24.322	0.99725	24.322	23.566	24.563	0					42	22	3	0	0	0	0.02438	1	1069	1069		54.722	25.573	1	468810			80459	8315	56099	56192	89234	89234					0.005396384622031292
TPNVMMISK	9	Unmodified	_TPNVMMISK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	510.764463	1019.51437	-0.048615	-2.4831E-05	2.1392	0.0010926	2.0906	0.0010678	510.7652840317392	24.227	1.3127	24.306	23.736	25.049	0.078344	-0.013915	-0.00052427	NaN	80.455	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449880			80460	8315	56099	56192							0.005396384622031292
TPPEIVQTLI	10	Unmodified	_TPPEIVQTLI_					0	0	0		ENST00000468432.1_1_6:66498672-66498885:+|nuORF	ENST00000468432.1_1_6:66498672-66498885:+|nuORF	ENST00000468432.1_1_6:66498672-66498885:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.826171875	2	555.823889	1109.63323	1.4609	0.00081198	2.0563	0.0011429	3.5171	0.0019549	555.8251126497871	16.771	0.20678	16.617	16.449	16.656	-0.15376					7	4	2	0	0	0	1.1307	1	104	104		26.693	2.4902	1	23225			80461	14869	56100	56193	89235	89235					0.08279451963062456
TPPHPLFL	8	Unmodified	_TPPHPLFL_					0	0	0			REV__chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	REV__chr2:142883035-142885349|162|16.54|0.23|6.19|+|0|TE_info:L1PA6,L1PA6_dup723,L1,LINE,donor,-,142882331,142883035|None,KYNU|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.21484375	2	461.263271	920.511988	-0.41992	-0.0001937	-3.1445	-0.0014505	-3.5645	-0.0016442	461.2616650785223	26.015	0.30376	25.992	25.82	26.124	-0.023088					11	6	2	0	0	0	0.027866	1	1258	1258		8.2313	0	1	41171	+		80462	19406	56101	56194	89236	89236					0.048552941110415304
TPPLEGPLLCS	11	Unmodified	_TPPLEGPLLCS_					0	0	0			REV__ENST00000395648.7_2_11:44955194-44955650:-|nuORF	REV__ENST00000395648.7_2_11:44955194-44955650:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	563.7930297851562	2	563.794275	1125.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.583	1	74.319	73.819	74.819	-0.26326								0	0	0	2.0375	1	8803	8803		98.629	8.2596	1		+		80463	31708	56102	56195	89237	89237					0.0162323267722968
TPPLEGPLLCS	11	Unmodified	_TPPLEGPLLCS_					0	0	0			REV__ENST00000395648.7_2_11:44955194-44955650:-|nuORF	REV__ENST00000395648.7_2_11:44955194-44955650:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	563.792724609375	2	563.794275	1125.574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.458	1	74.275	73.775	74.775	-0.18279								0	0	0	1.7841	1	8771	8771		93.195	8.0346	1		+		80464	31708	56102	56195	89238	89238					0.0162323267722968
TPPLILPTAD	10	Unmodified	_TPPLILPTAD_					0	0	0			REV__ENSG00000162722|ENST00000366481|TRIM58	REV__ENSG00000162722|ENST00000366481|TRIM58	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7583618164062	2	519.297507	1036.58046	0.33467	0.00017379	-0.25831	-0.00013414	0.07636	3.9654E-05	519.2971773988512	59.404	0.94557	59.213	58.935	59.881	-0.19101					45	23	3	0	0	0	0.03519	1	6621	6621		25.574	1.3713	1	544970	+		80465	25480	56103	56196	89239	89239					0.06363493900221329
TPPMLCGLC	9	Unmodified	_TPPMLCGLC_					0	0	0		ENST00000342115.8_1_1:110173783-110174137:+|nuORF	ENST00000342115.8_1_1:110173783-110174137:+|nuORF	ENST00000342115.8_1_1:110173783-110174137:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.9280700683594	2	467.713385	933.412216	-0.72088	-0.00033717	4.3811	0.0020491	3.6602	0.0017119	467.7153399051721	24.103	0.39404	24.056	23.826	24.22	-0.047148					17	8	3	0	0	0	0.024443	1	1006	1006		12.959	0	1	225460			80466	12503	56104	56197	89240	89240					-0.05715350881075665
TPPPKAAPPPP	11	Unmodified	_TPPPKAAPPPP_					0	0	0		SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant;ENSG00000126461|ENST00000360565|SCAF1	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	SCAF1|p.D1203Gfs*4|1|0.26|ENSG00000126461|chr19:49654855-49654856|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7756958007812	2	535.305667	1068.59678	-0.14907	-7.9798E-05	2.0252	0.0010841	1.8761	0.0010043	535.3047378222115	63.451	0.64793	63.193	62.917	63.565	-0.25824					42	16	4	0	0	0	0.024768	1	7138	7138		39.253	7.298	1	506450			80467	4201	56105	56198	89241	89241					0.06522619856968959
TPPPQLSSH	9	Unmodified	_TPPPQLSSH_					0	0	0			REV__AluJo_dup70939|chr19:16095747-16095917:-|2.609708225140752|0.002178492838753|10.23|514.0|14|2|anti-sense	REV__AluJo_dup70939|chr19:16095747-16095917:-|2.609708225140752|0.002178492838753|10.23|514.0|14|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.2374267578125	2	482.248349	962.482145	-0.84126	-0.0004057	2.185	0.0010537	1.3438	0.00064803	482.24889535452917	40.964	0.52123	40.733	40.52	41.041	-0.2303					17	13	2	0	0	0	0.024457	1	3610	3610		37.159	14.117	1	70152	+		80468	19114	56106	56199	89242	89242					-0.000596896249362544
TPPQPSLKE	9	Unmodified	_TPPQPSLKE_					0	0	0			REV__nc|ENSG00000100889|Q16822-2|PCK2	REV__nc|ENSG00000100889|Q16822-2|PCK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.7712097167969	2	498.771657	995.528761	0.43234	0.00021564	-1.7911	-0.00089334	-1.3587	-0.0006777	498.77066535088994	104.85	1.772	104.85	104.16	105.93	0					146	51	5	0	0	0	0.87448	1	13478	13478		34.173	0.65696	1	5167900	+		80469	36525	56107	56200	89243	89243					0.030817502063428037
TPPQSTPK	8	Unmodified	_TPPQSTPK_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.74041748046875	2	428.232168	854.449782	0.71331	0.00030546	2.852	0.0012213	3.5653	0.0015268	428.23340692541376	22.378	0.36538	22.189	22.055	22.42	-0.18894					10	7	2	0	0	0	0.027866	1	785	785		44.117	0	1	22336			80470	7175	56108	56201	89244	89244					0.016735229720438838
TPPSPLDGNL	10	Unmodified	_TPPSPLDGNL_					0	0	0			REV__ENST00000538780.1_1_12:110152483-110152666:+|nuORF	REV__ENST00000538780.1_1_12:110152483-110152666:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.27764892578125	2	505.761289	1009.50803	0.22009	0.00011131	0.28967	0.0001465	0.50976	0.00025782	505.76120790101163	57.295	0.56187	57.131	56.909	57.471	-0.16432					22	14	2	0	0	0	0.03519	1	6416	6416		66.962	15.769	1	224270	+		80471	34720	56109	56202	89245	89245					0.0036515982668561264
TPPSRLTW	8	Unmodified	_TPPSRLTW_					0	0	0			REV__nc|ENSG00000290966|A6NCN2|KRT87P	REV__nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2628479003906	2	479.261259	956.507966	-0.26088	-0.00012503	3.8616	0.0018507	3.6008	0.0017257	479.26292329969897	17.096	0.40308	16.889	16.762	17.165	-0.20777					13	7	3	0	0	0	1.0574	1	135	135		25.45	3.4903	1	94901	+		80472	37235	56110	56203	89246	89246					0.027972046173204035
TPPSRLTW	8	Unmodified	_TPPSRLTW_					0	0	0			REV__nc|ENSG00000290966|A6NCN2|KRT87P	REV__nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.261259	956.507966	1.8244	0.00087438	1.6876	0.00080882	3.5121	0.0016832	479.2619689499239	17.136	0.35324	16.982	16.856	17.209	-0.15403	0.042061	0.00097978	NaN	25.45	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117910	+		80473	37235	56110	56203							0.027972046173204035
TPPSRLTW	8	Unmodified	_TPPSRLTW_					0	0	0			REV__nc|ENSG00000290966|A6NCN2|KRT87P	REV__nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	479.261259	956.507966	-0.26088	-0.00012503	3.8616	0.0018507	3.6008	0.0017257	479.26292329969897	17.096	0.40308	16.889	16.762	17.165	-0.20777	-0.051509	0.0030636	NaN	25.45	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94901	+		80474	37235	56110	56203							0.027972046173204035
TPPSRLTW	8	Unmodified	_TPPSRLTW_					0	0	0			REV__nc|ENSG00000290966|A6NCN2|KRT87P	REV__nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	479.261259	956.507966	5.2609	0.0025213	-1.7063	-0.00081774	3.5546	0.0017036	479.2603274658735	17.2	0.28814	16.949	16.788	17.076	-0.25049	0.0094477	-0.0022734	NaN	25.45	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193000	+		80475	37235	56110	56203							0.027972046173204035
TPPTPVLRVL	10	Unmodified	_TPPTPVLRVL_					0	0	0		ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8419799804688	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	0.98754	1	12722	12722		47.657	3.5405	1	10488000			80476	4135	56111	56204	89247	89247					0.12811168299458586
TPPTPVLRVL	10	Unmodified	_TPPTPVLRVL_					0	0	0		ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	ENSG00000125744|ENST00000245923|RTN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.841796875	2	546.842416	1091.67028	-0.3389	-0.00018533	-3.9718	-0.002172	-4.3107	-0.0023573	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	1.0002	1	12465	12465		45.972	5.3996	1	9530200			80477	4135	56111	56204	89248	89248					0.12811168299458586
TPPYLFLTN	9	Unmodified	_TPPYLFLTN_					0	0	0		ENST00000373019.4_1_1:38423550-38423604:-|nuORF	ENST00000373019.4_1_1:38423550-38423604:-|nuORF	ENST00000373019.4_1_1:38423550-38423604:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.298583984375	2	533.2844	1064.55425	-0.94214	-0.00050243	-3.4303	-0.0018293	-4.3724	-0.0023317	533.2824636983763	34.485	0.52094	34.31	34.05	34.571	-0.17557					22	12	3	0	0	0	0.024457	1	2532	2532		37.159	18.056	1	251810			80478	13064	56112	56205	89249	89249					0.024552247287601858
TPPYLFLTN	9	Unmodified	_TPPYLFLTN_					0	0	0		ENST00000373019.4_1_1:38423550-38423604:-|nuORF	ENST00000373019.4_1_1:38423550-38423604:-|nuORF	ENST00000373019.4_1_1:38423550-38423604:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.2844	1064.55425	-0.64854	-0.00034586	-3.5699	-0.0019038	-4.2184	-0.0022496	533.2823996417083	34.429	0.47969	34.222	34.005	34.485	-0.20696	-0.074862	-6.2251E-05	NaN	37.159	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285960			80479	13064	56112	56205							0.024552247287601858
TPQERFEI	8	Unmodified	_TPQERFEI_					0	0	0		nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2592468261719	2	510.261456	1018.50836	-1.2719	-0.000649	-3.2252	-0.0016457	-4.4971	-0.0022947	510.25988118619506	24.603	1.1813	24.556	24.044	25.225	-0.047148					62	26	5	0	0	0	0.4075	1	1089	1089		96.19	8.0135	1	2174400			80480	817	56113	56206	89250	89250					-0.00015420453485148755
TPQGFRSTL	9	Unmodified	_TPQGFRSTL_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.76947021484375	2	503.769448	1005.52434	-0.39343	-0.0001982	0.080168	4.0386E-05	-0.31326	-0.00015781	503.76939290068606	42.995	0.68994	42.995	42.642	43.332	0					55	18	4	0	0	0	0.54114	1	4007	4007		56.632	1.8559	1	2708300			80481	5223	56114	56207	89251	89251					0.021802857834245515
TPQGFRSTL	9	Unmodified	_TPQGFRSTL_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	503.769448	1005.52434	-0.36997	-0.00018638	0.11308	5.6968E-05	-0.25689	-0.00012941	503.7694368267307	43.17	0.62029	43.031	42.773	43.393	-0.13929	-0.014809	3.7443E-05	NaN	56.632	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2977900			80482	5223	56114	56207							0.021802857834245515
TPQGQDYADHR	11	Unmodified	_TPQGQDYADHR_					0	0	0		nc|ENSG00000198276|Q9NWZ5-3|UCKL1	nc|ENSG00000198276|Q9NWZ5-3|UCKL1	nc|ENSG00000198276|Q9NWZ5-3|UCKL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	644.2886352539062	2	644.289265	1286.56398	-0.17875	-0.00011517	-0.76026	-0.00048983	-0.93901	-0.000605	644.2887745579836	26.874	0.67949	26.706	26.42	27.099	-0.16816					51	15	5	0	0	0	0.43676	1	1428	1428		80.455	10.827	1	1647500			80483	18647	56115	56208	89252	89252					-0.06784239003832226
TPQIIERGP	9	Unmodified	_TPQIIERGP_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8219299316406	2	505.785099	1009.55564	0.07722	3.9057E-05	1.7927	0.00090674	1.87	0.00094579	505.7848629899992	42.574	0.71853	42.6	42.323	43.042	0.026012					34	19	3	0	0	0	0.024436	1	3936	3936		23.042	0	1	2481800	+		80484	27074	56116	56209	89253	89253					0.05124858817521272
TPQLTPFSGAD	11	Unmodified	_TPQLTPFSGAD_					0	0	0			REV__ENST00000479155.1_1_17:18137242-18138852:+|nuORF	REV__ENST00000479155.1_1_17:18137242-18138852:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3297119140625	2	567.277303	1132.54005	-0.60984	-0.00034595	-1.8693	-0.0010604	-2.4791	-0.0014063	567.7772725129831	93.717	1.0358	93.713	93.032	94.068	-0.0041962					33	24	2	0	0	0	0.024768	1	11797	11797		24.232	0	1	80706	+		80485	23243	56117	56210	89254	89254					-0.02091472490178603
TPQNPQFSL	9	Unmodified	_TPQNPQFSL_					0	0	0		ENST00000542575.6_2_19:47278531-47278672:-|nuORF	ENST00000542575.6_2_19:47278531-47278672:-|nuORF	ENST00000542575.6_2_19:47278531-47278672:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.3138427734375	2	516.261456	1030.50836	0.25857	0.00013349	0.53548	0.00027645	0.79405	0.00040994	516.7633726454028	98.09	0.92133	98.1	97.771	98.693	0.010239					33	21	3	0	0	0	0.024288	1	12502	12502		36.447	0	1	148510			80486	16460	56118	56211	89255	89255					-0.005674204534898308
TPQPARDVK	9	Unmodified	_TPQPARDVK_					0	0	0			REV__ENSG00000156858|ENST00000300835|PRR14	REV__ENSG00000156858|ENST00000300835|PRR14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7036437988281	2	506.282723	1010.55089	0.16248	8.226E-05	2.4968	0.0012641	2.6593	0.0013464	506.28413616854374	32.707	0.73581	32.514	32.249	32.985	-0.19261					27	17	2	0	0	0	0.024523	1	2293	2293		29.15	7.1897	1	177690	+		80487	25093	56119	56212	89256	89256					0.04603974674762412
TPQRASLSR	9	Unmodified	_TPQRASLSR_					0	0	0			REV__SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|26|2|sense	REV__SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|26|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7610168457031	2	508.285797	1014.55704	0.52947	0.00026912	2.5414	0.0012918	3.0709	0.0015609	508.28695405365755	84.366	0.80762	84.162	83.951	84.759	-0.20329					39	18	3	0	0	0	0.024288	1	10233	10233		44.377	0	1	762900	+		80488	37645	56120	56213	89257	89257					0.05034492906270316
TPQRCLPCL	9	Unmodified	_TPQRCLPCL_					0	0	0			REV__ENSG00000165188|ENST00000489339|RNF183	REV__ENSG00000165188|ENST00000489339|RNF183	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2797241210938	2	515.762255	1029.50996	-1.0519	-0.00054252	3.786	0.0019527	2.7341	0.0014102	516.2656584521317	55.556	0.25794	55.4	55.277	55.535	-0.15655					9	6	2	0	0	0	0.0242	1	5963	5963		35.152	12.11	1	107580	+		80489	25853	56121	56214	89258	89258					-0.0036182596074922913
TPQRQSEP	8	Unmodified	_TPQRQSEP_					0	0	0			REV__ENST00000533428.2_1_15:97300531-97301611:+|nuORF	REV__ENST00000533428.2_1_15:97300531-97301611:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.78228759765625	2	471.735606	941.456658	-0.15395	-7.2624E-05	-0.29922	-0.00014115	-0.45318	-0.00021378	471.7360344625913	29.674	0.72271	29.677	29.314	30.036	0.0031376					40	17	4	0	0	0	0.027866	1	1787	1787		29.15	0	1	277230	+		80490	34604	56122	56215	89259	89259					-0.016411641473837335
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(72)	0	0	1		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2573852539062	2	523.258391	1044.50223	-0.98578	-0.00051582	-0.88321	-0.00046214	-1.869	-0.00097796	523.2578764480814	22.826	1.3941	22.826	21.771	23.165	0					114	29	5	0	0	0	0.32811	1	864	864		71.877	29.481	1	2618300			80491	9030	56123	56216	89260	89260		377			-0.018242619566535723
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(160)	0	0	1		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2586059570312	2	523.258391	1044.50223	-1.0722	-0.00056104	0.46234	0.00024192	-0.60987	-0.00031912	523.2586422911149	24.056	3.4521	24.056	23.079	26.531	0					279	81	5	0	0	0	0.015925	21	1113	877;890;902;915;924;935;948;960;973;983;995;1007;1019;1031;1043;1055;1067;1080;1099;1113;1125		157.21	85.331	1	7564300			80492	9030	56123	56216	89261;89262;89263;89264;89265;89266;89267;89268;89269;89270;89271;89272;89273;89274;89275;89276;89277;89278;89279;89280;89281	89280		377			-0.018242619566535723
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(77)	0	0	1		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2574462890625	2	523.258391	1044.50223	-0.52984	-0.00027724	-1.8901	-0.00098901	-2.4199	-0.0012663	523.2573682011821	22.883	1.5005	22.822	21.807	23.308	-0.06086					102	32	5	0	0	0	0.29158	2	861	861;872		76.774	20.685	1	2616500			80493	9030	56123	56216	89282;89283	89282		377			-0.018242619566535723
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(150)	0	0	1		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2582397460938	2	523.258391	1044.50223	-1.1077	-0.00057959	0.53944	0.00028227	-0.56822	-0.00029733	523.258669898982	24.037	3.2964	23.99	23.125	26.422	-0.047146					263	77	5	0	0	0	0.021872	20	1059	886;899;917;929;952;964;975;986;997;1009;1021;1034;1046;1059;1070;1081;1095;1108;1120;1133		148.04	79.256	1	7146100			80494	9030	56123	56216	89284;89285;89286;89287;89288;89289;89290;89291;89292;89293;89294;89295;89296;89297;89298;89299;89300;89301;89302;89303	89297		377			-0.018242619566535723
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(160)	0	0	1		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2579345703125	2	523.258391	1044.50223	-0.26091	-0.00013652	-0.35474	-0.00018562	-0.61565	-0.00032214	523.2582781028731	23.638	4.5159	23.714	21.689	26.205	0.076239					326	101	5	0	0	0	0.014988	30	916	703;716;740;749;761;775;797;810;822;835;847;859;871;882;893;905;916;929;940;952;964;977;989;1002;1015;1027;1039;1049;1061;1076		161.9	82.447	1	8029100			80495	9030	56123	56216	89304;89305;89306;89307;89308;89309;89310;89311;89312;89313;89314;89315;89316;89317;89318;89319;89320;89321;89322;89323;89324;89325;89326;89327;89328;89329;89330;89331;89332;89333	89320		377			-0.018242619566535723
TPQSNRPVM	9	Unmodified	_TPQSNRPVM_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2608032226562	2	515.260933	1028.50731	-1.4849	-0.00076511	-0.38174	-0.00019669	-1.8666	-0.0009618	515.2613631205702	30.056	1.655	30.056	29.773	31.428	0					104	39	5	0	0	0	0.03849	6	1901	1877;1889;1901;1914;1927;1941		134.81	69.389	1	21551000			80496	9030	56123	56217	89334;89335;89336;89337;89338;89339	89336					-0.005799580940447413
TPQSNRPVM	9	Unmodified	_TPQSNRPVM_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2610473632812	2	515.260933	1028.50731	-0.64135	-0.00033046	-0.544	-0.0002803	-1.1854	-0.00061077	515.2609074608492	30.014	2.0591	30.023	29.319	31.378	0.0086689					122	49	5	0	0	0	0.047345	6	1903	1855;1867;1879;1891;1903;1916		129.68	66.376	1	24849000			80497	9030	56123	56217	89340;89341;89342;89343;89344;89345	89344					-0.005799580940447413
TPQSNRPVM	9	Unmodified	_TPQSNRPVM_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2608032226562	2	515.260933	1028.50731	-1.3802	-0.00071117	0.36977	0.00019053	-1.0104	-0.00052064	515.2612293640834	29.664	1.3458	29.742	29.45	30.796	0.078346					87	32	5	0	0	0	0.03201	5	1786	1775;1786;1799;1811;1823		139.97	60.519	1	18966000			80498	9030	56123	56217	89346;89347;89348;89349;89350	89347					-0.005799580940447413
TPQSSGRSSL	10	Unmodified	_TPQSSGRSSL_					0	0	0		ENSG00000135338|ENST00000369846|LCA5;LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.259033203125	2	510.259445	1018.50434	-0.74177	-0.0003785	0.10729	5.4744E-05	-0.63449	-0.00032375	510.25951908944114	24.568	0.91383	24.568	24.297	25.211	0					41	20	4	0	0	0	0.29487	3	1069	1069;1079;1092		109.48	29.988	1	2256100			80499	4881	56124	56218	89351;89352;89353	89351					-0.004175099471808608
TPQSSGRSSL	10	Unmodified	_TPQSSGRSSL_					0	0	0		ENSG00000135338|ENST00000369846|LCA5;LCA5|p.P502Qfs*91|1|0.21|ENSG00000135338|chr6:79487593-79487593|G/-|frameshift_variant	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.25909423828125	2	510.259445	1018.50434	-1.2719	-0.000649	0.71664	0.00036567	-0.55527	-0.00028333	510.25988118619506	24.603	1.1813	24.556	24.044	25.225	-0.047148					62	26	5	0	0	0	0.62511	1	1065	1065		74.165	7.7357	1	2174400			80500	4881	56124	56218	89354	89354					-0.004175099471808608
TPQTLYLSP	9	Unmodified	_TPQTLYLSP_					0	0	0			REV__nc|ENSG00000186377|Q8N118-2|CYP4X1	REV__nc|ENSG00000186377|Q8N118-2|CYP4X1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.8032531738281	2	510.274032	1018.53351	0.11095	5.6615E-05	1.1226	0.00057281	1.2335	0.00062943	510.27450566987744	86.352	0.61157	86.215	85.919	86.53	-0.13734					19	13	2	0	0	0	0.024344	1	10494	10494		37.812	21.338	1	99889	+		80501	37026	56125	56219	89355	89355					0.02498634349092299
TPQYKGKS	8	Unmodified	_TPQYKGKS_					0	0	0		nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2	nc|ENSG00000068745|Q9UHH9-4|IP6K2	nc|ENSG00000068745|Q9UHH9-4|IP6K2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7449035644531	2	454.745442	907.476331	0.2342	0.0001065	-1.5466	-0.00070332	-1.3124	-0.00059682	454.744657043267	101.69	1.5633	101.56	100.98	102.54	-0.12576					94	37	4	0	0	0	1.0106	2	12623	12623;12635		35.618	6.4687	1	2405200			80502	18069	56126	56220	89356;89357	89356					0.018892118633857535
TPRAPNVAP	9	Unmodified	_TPRAPNVAP_					0	0	0		ENST00000361321.5_1_1:91487567-91487819:-|nuORF	ENST00000361321.5_1_1:91487567-91487819:-|nuORF	ENST00000361321.5_1_1:91487567-91487819:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.7591552734375	2	461.758884	921.503215	-0.078002	-3.6018E-05	-0.63106	-0.0002914	-0.70906	-0.00032741	461.75862449237707	30.573	1.8856	30.647	30.17	32.056	0.074314					103	45	4	0	0	0	0.42604	1	1951	1951		64.207	0.901	1	19081000			80503	12794	56127	56221	89358	89358					0.039323204745642215
TPRARARRLW	10	Unmodified	_TPRARARRLW_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8828125	2	641.883804	1281.75306	-2.5036	-0.001607	0.22313	0.00014322	-2.2804	-0.0014638	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.1265	1	11656	11656		24.519	0	1	1400600			80504	8915	56128	56222	89359	89359					0.12344922870829578
TPRGGVGSV	9	Unmodified	_TPRGGVGSV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.2301330566406	2	415.229959	828.445365	0.40021	0.00016618	0.27596	0.00011459	0.67617	0.00028077	415.2299953417559	27.091	1.4348	27.091	26.489	27.924	0					88	36	4	0	0	0	0.2101	1	1443	1443		87.696	18.91	1	2843300			80505	5806	56129	56223	89360	89360					0.024280585491396778
TPRGTTKVV	9	Unmodified	_TPRGTTKVV_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7875061035156	2	479.787641	957.56073	-1.1138	-0.00053437	0.082432	3.955E-05	-1.0313	-0.00049482	479.78740465299296	22.219	0.48206	22.293	22.125	22.607	0.073954					33	9	5	0	0	0	0.70156	1	725	725		45.972	1.8554	1	1215700			80506	5936	56130	56224	89361	89361					0.08025162680144149
TPRGTTKVV	9	Unmodified	_TPRGTTKVV_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	479.787641	957.56073	0.096126	4.612E-05	-0.24147	-0.00011585	-0.14534	-6.9733E-05	479.78722562529333	22.315	0.46633	22.315	22.106	22.572	0	-0.0028365	0.00015948	NaN	45.972	30	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022300			80507	5936	56130	56224							0.08025162680144149
TPRGTTKVV	9	Unmodified	_TPRGTTKVV_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	479.787641	957.56073	-0.12661	-6.0744E-05	-0.74567	-0.00035776	-0.87228	-0.00041851	479.7872742862401	22.42	0.65431	22.345	22.13	22.784	-0.075296	0.027215	-0.00032434	NaN	45.972	40	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130200			80508	5936	56130	56224							0.08025162680144149
TPRKDFTQL	9	Unmodified	_TPRKDFTQL_					0	0	0		ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.30322265625	2	553.303655	1104.59276	-1.3932	-0.00077087	0.69247	0.00038314	-0.70074	-0.00038772	553.3040865252328	36.13	0.97943	36.087	35.83	36.81	-0.042454					83	26	5	0	0	0	0.28047	1	2825	2825		78.264	6.3863	1	5227500			80509	6547	56131	56225	89362	89362					0.04464530363270569
TPRKDFTQL	9	Unmodified	_TPRKDFTQL_					0	0	0		ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.30322265625	2	553.303655	1104.59276	-0.59424	-0.00032879	-0.15573	-8.6169E-05	-0.74997	-0.00041496	553.3036120875139	36.243	1.0045	36.281	35.997	37.002	0.038044					94	27	6	0	0	0	0.32064	1	2809	2809		72.879	5.3856	1	4598800			80510	6547	56131	56225	89363	89363					0.04464530363270569
TPRKDFTQL	9	Unmodified	_TPRKDFTQL_					0	0	0		ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	553.303655	1104.59276	-0.91254	-0.00050491	0.2236	0.00012372	-0.68894	-0.00038119	553.3038108038968	36.272	0.93672	36.272	36.029	36.966	0	0.058433	-6.8555E-05	NaN	78.264	95	25	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4363500			80511	6547	56131	56225							0.04464530363270569
TPRKGLDSH	9	Unmodified	_TPRKGLDSH_					0	0	0			REV__nc|ENSG00000105695|P20916-3|MAG	REV__nc|ENSG00000105695|P20916-3|MAG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7957458496094	2	505.772522	1009.53049	0.092709	4.689E-05	-1.3224	-0.00066883	-1.2297	-0.00062194	505.7715634325957	21.173	0.34445	21.244	21.057	21.401	0.071487					11	6	2	0	0	0	0.024445	1	569	569		31.634	3.38	1	28493	+		80512	21555	56132	56226	89364	89364					0.026108040149551925
TPRKGLDSH	9	Unmodified	_TPRKGLDSH_					0	0	0			REV__nc|ENSG00000105695|P20916-3|MAG	REV__nc|ENSG00000105695|P20916-3|MAG	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.772522	1009.53049	-0.52192	-0.00026397	-0.96026	-0.00048567	-1.4822	-0.00074965	505.7717404951429	21.332	0.34371	21.241	21.059	21.403	-0.090092	-0.0015122	0.00017729	NaN	31.634	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20356	+		80513	21555	56132	56226							0.026108040149551925
TPRLERKQ	8	Unmodified	_TPRLERKQ_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3106079101562	2	514.30399	1026.59343	-0.90203	-0.00046392	0.56276	0.00028943	-0.33928	-0.00017449	514.3028774616569	64.692	0.33481	64.692	64.538	64.873	0					12	8	2	0	0	0	0.027866	1	7652	7652		37.159	4.3467	1	347930	+		80514	24874	56133	56227	89365	89365					0.0811936980298924
TPRLFSVAR	9	Unmodified	_TPRLFSVAR_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.7984008789062	2	523.808908	1045.60326	0.1749	9.1616E-05	0.32841	0.00017202	0.50331	0.00026364	523.8085871771731	21.74	0.43115	21.563	21.35	21.781	-0.17721					17	8	3	0	0	0	0.024447	1	734	734		19.104	0	1	52126			80515	4432	56134	56228	89366	89366					0.08228557808365622
TPRPKFSV	8	Unmodified	_TPRPKFSV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2725524902344	2	466.271627	930.528701	-0.32309	-0.00015065	0.41998	0.00019582	0.096891	4.5178E-05	466.27167990311403	36.288	0.86104	36.083	35.786	36.647	-0.20518					45	22	3	0	0	0	0.76379	1	2828	2828		62.107	1.8135	1	2779500			80516	10190	56135	56229	89367	89367					0.06065794996993645
TPRPKFSV	8	Unmodified	_TPRPKFSV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.27178955078125	2	466.271627	930.528701	0.25947	0.00012098	-0.18114	-8.4461E-05	0.078332	3.6524E-05	466.27133436356917	36.328	0.8707	36.111	35.779	36.65	-0.21661					63	22	5	0	0	0	0.98759	1	2832	2832		39.253	3.6345	1	2798600			80517	10190	56135	56229	89368	89368					0.06065794996993645
TPRPKFSV	8	Unmodified	_TPRPKFSV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.271627	930.528701	-1.0512	-0.00049014	0.86747	0.00040448	-0.18372	-8.5663E-05	466.2716917923193	36.318	0.47863	36.318	36.029	36.508	0	0.16721	0.00099168	NaN	62.107	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217630			80518	10190	56135	56229							0.06065794996993645
TPRPKFSV	8	Unmodified	_TPRPKFSV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.271627	930.528701	-0.94668	-0.00044141	0.20467	9.5431E-05	-0.74201	-0.00034598	466.2712139106308	36.141	0.41439	36.099	35.83	36.244	-0.042454	-0.051469	0.00037358	NaN	62.107	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247300			80519	10190	56135	56229							0.06065794996993645
TPRPKFSV	8	Unmodified	_TPRPKFSV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.271627	930.528701	0.24708	0.00011521	-0.30269	-0.00014114	-0.055616	-2.5932E-05	466.27132011657477	36.257	0.55043	36.295	35.927	36.478	0.038044	0.14419	-9.9552E-05	NaN	62.107	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156870			80520	10190	56135	56229							0.06065794996993645
TPRPKVLR	8	Unmodified	_TPRPKVLR_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.86785888671875	2	483.813993	965.613434	0.11601	5.6129E-05	-0.39314	-0.00019021	-0.27713	-0.00013408	483.8137032838248	37.681	0.38707	37.488	37.229	37.616	-0.193					13	9	2	0	0	0	0.027866	1	3043	3043		24.203	6.8378	1	167040			80521	5270	56136	56230	89369	89369					0.12925165533602012
TPRPKVLR	8	Unmodified	_TPRPKVLR_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.813993	965.613434	-1.0264	-0.00049657	0.54044	0.00026147	-0.48592	-0.00023509	483.81431496169597	37.658	0.45662	37.439	37.231	37.688	-0.2195	-0.02559	0.00033643	NaN	17.365	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218660			80522	5270	56136	56230							0.12925165533602012
TPRPKVLR	8	Unmodified	_TPRPKVLR_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.813993	965.613434	-0.85544	-0.00041387	0.67677	0.00032743	-0.17867	-8.6443E-05	483.81425572391134	37.684	0.49527	37.466	37.223	37.718	-0.21848	0.0016601	0.00046834	NaN	17.365	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238530			80523	5270	56136	56230							0.12925165533602012
TPRPLPTFG	9	Unmodified	_TPRPLPTFG_					0	0	0			REV__ENST00000263269.3_1_19:48947279-48947732:+|nuORF	REV__ENST00000263269.3_1_19:48947279-48947732:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.27880859375	2	493.276909	984.539266	0.73489	0.0003625	2.3259	0.0011473	3.0608	0.0015098	493.2779568879019	20.572	1.2754	20.376	20.187	21.462	-0.19577					49	25	2	0	0	0	0.75397	1	568	568		42.396	8.8806	1	559480	+		80524	29684	56137	56231	89370	89370					0.04637777651419128
TPRPPPQINL	10	Unmodified	_TPRPPPQINL_					0	0	0		ENST00000597550.5_1_19:53700488-53703885:+|nuORF	ENST00000597550.5_1_19:53700488-53703885:+|nuORF	ENST00000597550.5_1_19:53700488-53703885:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.8269653320312	2	566.827298	1131.64004	-0.64123	-0.00036346	0.19276	0.00010926	-0.44846	-0.0002542	566.8273338834334	53.1	2.0654	52.953	52.057	54.123	-0.14723					126	55	4	0	0	0	0.78438	2	5697	5697;5711		61.691	1.573	1	3114600			80525	17450	56138	56232	89371;89372	89371					0.07948809634262943
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.26397705078125	2	478.263999	954.513445	0.14088	6.7377E-05	-0.99546	-0.00047609	-0.85458	-0.00040872	478.2634142984987	38.818	0.77324	38.818	38.515	39.288	0					46	20	3	0	0	0	0.16638	3	3274	3274;3286;3297		95.815	9.0316	1	5730500			80526	5353	56139	56233	89373;89374;89375	89373					0.03436883409131042
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.2637023925781	2	478.263999	954.513445	-0.17012	-8.1363E-05	-0.49503	-0.00023676	-0.66516	-0.00031812	478.26353279569645	38.808	0.80521	38.709	38.358	39.163	-0.098751					63	21	5	0	0	0	0.247	1	3273	3273		82.75	13.964	1	5460700			80527	5353	56139	56233	89376	89376					0.03436883409131042
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2630920410156	2	478.263999	954.513445	-0.95012	-0.00045441	-0.1622	-7.7574E-05	-1.1123	-0.00053198	478.26382117450925	38.985	0.76754	39.009	38.688	39.455	0.023727					49	20	4	0	0	0	0.28753	1	3258	3258		77.318	9.8239	1	6271100			80528	5353	56139	56233	89377	89377					0.03436883409131042
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;ENST00000413800.5_1_7:99764329-99764836:-|nuORF	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.24615478515625	2	482.248349	962.482145	-0.42849	-0.00020664	-0.33365	-0.0001609	-0.76213	-0.00036754	482.2481083382789	38.807	0.77678	38.709	38.278	39.054	-0.098755					48	20	3	0	0	0	0.16638	1	3280	3280		95.815	13.51	1	2817400			80529	14029	56140	56234	89378	89378					-0.0005968962495899177
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;ENST00000413800.5_1_7:99764329-99764836:-|nuORF	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.24639892578125	2	482.248349	962.482145	-1.1947	-0.00057615	0.39417	0.00019009	-0.80055	-0.00038606	482.2484173352333	39.032	0.78068	39.055	38.568	39.349	0.023727					39	20	2	0	0	0	0.22902	2	3253	3253;3264		85.161	13.865	1	3121400			80530	14029	56140	56234	89379;89380	89379					-0.0005968962495899177
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;ENST00000413800.5_1_7:99764329-99764836:-|nuORF	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	nc|ENSG00000197093|Q96RP7-2|GAL3ST4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.248349	962.482145	-0.28767	-0.00013873	-0.40709	-0.00019632	-0.69477	-0.00033505	482.2480747649812	38.883	0.79156	38.883	38.356	39.148	0	0.00096668	-0.0002244	NaN	95.815	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2741700			80531	14029	56140	56234							-0.0005968962495899177
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3265380859375	2	550.327131	1098.63971	-0.30481	-0.00016774	-0.41951	-0.00023087	-0.72431	-0.00039861	550.326899312271	51.979	1.001	51.979	51.633	52.634	0					85	26	4	0	0	0	0.76305	1	5546	5546		59.931	10.395	1	11227000			80532	2997	56141	56235	89381	89381					0.09433389914420331
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3270263671875	2	550.327131	1098.63971	-1.2688	-0.00069827	0.48735	0.0002682	-0.78148	-0.00043007	550.3274046393027	51.874	1.4352	51.966	51.615	53.05	0.091942					82	37	3	0	0	0	0.73399	1	5452	5452		61.691	6.9689	1	9187200			80533	2997	56141	56235	89382	89382					0.09433389914420331
TPRTVQLNS	9	Unmodified	_TPRTVQLNS_					0	0	0			REV__ENST00000396783.2_1_6:29457050-29457287:-|nuORF	REV__ENST00000396783.2_1_6:29457050-29457287:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.271240234375	2	508.28018	1014.54581	0.14281	7.2587E-05	4.0951	0.0020815	4.2379	0.0021541	508.2816498189649	50.47	0.33492	50.289	50.055	50.39	-0.18071					15	8	2	0	0	0	0.024021	1	5116	5116		49.442	15.269	1	264920	+		80534	31747	56142	56236	89383	89383					0.039116708121468946
TPRVGIDP	8	Unmodified	_TPRVGIDP_					0	0	0			REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.74041748046875	2	427.74016	853.465767	0.70193	0.00030024	-0.42337	-0.00018109	0.27856	0.00011915	427.73992970717404	22.355	1.4006	22.166	21.58	22.98	-0.18894					67	29	5	0	0	0	0.74904	1	785	785		63.306	15.391	1	1641700	+		80535	25548	56143	56237	89384	89384					0.03317229208948902
TPRVGIDP	8	Unmodified	_TPRVGIDP_					0	0	0			REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	427.7402038574219	2	427.74016	853.465767	-0.30555	-0.00013069	0.68605	0.00029345	0.38051	0.00016276	427.7403623048281	22.489	1.1089	22.304	21.952	23.061	-0.18539					57	23	4	0	0	0	0.6248	2	785	785;796		73.975	24.533	1	1836000	+		80536	25548	56143	56237	89385;89386	89385					0.03317229208948902
TPRVGIDP	8	Unmodified	_TPRVGIDP_					0	0	0			REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	REV__GABRG1|p.V225*|1|0.31|ENSG00000163285|chr4:46058576-46058576|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.7406311035156	2	427.74016	853.465767	0.64772	0.00027705	-0.39588	-0.00016933	0.25184	0.00010772	427.73991521063635	22.464	1.2131	22.262	21.855	23.069	-0.20199					52	25	3	0	0	0	0.59392	2	784	771;784		76.847	19.035	1	1955600	+		80537	25548	56143	56237	89387;89388	89388					0.03317229208948902
TPRVHISSV	9	Unmodified	_TPRVHISSV_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.28533935546875	2	498.285266	994.555979	-0.12469	-6.2132E-05	-0.20417	-0.00010173	-0.32886	-0.00016387	498.2851794798594	34.625	1.1739	34.401	34.033	35.207	-0.22412					77	29	4	0	0	0	0.26966	3	2580	2567;2580;2594		79.713	20.931	1	4935700			80538	11058	56144	56238	89389;89390;89391	89390					0.05848278537371243
TPRVHISSV	9	Unmodified	_TPRVHISSV_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.28515625	2	498.285266	994.555979	-0.29258	-0.00014579	-0.087267	-4.3484E-05	-0.37985	-0.00018927	498.28517090359276	34.637	1.1172	34.43	34.082	35.199	-0.20696					71	27	4	0	0	0	0.28753	4	2566	2555;2566;2578;2592		77.318	8.7117	1	4984700			80539	11058	56144	56238	89392;89393;89394;89395	89393					0.05848278537371243
TPRVHISSV	9	Unmodified	_TPRVHISSV_					0	0	0		ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	ENSG00000277586|ENST00000610854|NEFL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.28515625	2	498.285266	994.555979	-0.77985	-0.00038859	0.32997	0.00016442	-0.44988	-0.00022417	498.28539627479165	34.531	0.86995	34.355	34.089	34.959	-0.17557					64	21	4	0	0	0	0.5973	1	2536	2536		52.937	3.4952	1	4801900			80540	11058	56144	56238	89396	89396					0.05848278537371243
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1;TNFAIP1|p.E257K|1|0.3|ENSG00000109079|chr17:28344418-28344418|G/A|missense_variant;nc|ENSG00000109079|Q13829-2|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7667236328125	2	499.766906	997.519259	0.34921	0.00017452	-1.9193	-0.00095919	-1.5701	-0.00078467	499.76634807829527	41.793	1.2097	41.793	41.396	42.605	0					96	34	5	0	0	0	0.056725	4	3787	3767;3787;3799;3814		126.24	19.098	1	16714000			80541	2960	56145	56239	89397;89398;89399;89400	89398					0.020399819208023473
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1;TNFAIP1|p.E257K|1|0.3|ENSG00000109079|chr17:28344418-28344418|G/A|missense_variant;nc|ENSG00000109079|Q13829-2|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.76641845703125	2	499.766906	997.519259	-0.32536	-0.0001626	-1.1893	-0.00059436	-1.5146	-0.00075696	499.7666998919668	41.967	1.4708	41.835	41.421	42.892	-0.1322					117	41	6	0	0	0	0.041068	4	3784	3784;3796;3805;3819		132.76	28.701	1	18543000			80542	2960	56145	56239	89401;89402;89403;89404	89401					0.020399819208023473
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1;TNFAIP1|p.E257K|1|0.3|ENSG00000109079|chr17:28344418-28344418|G/A|missense_variant;nc|ENSG00000109079|Q13829-2|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7666931152344	2	499.766906	997.519259	0.021865	1.0927E-05	-1.4806	-0.00073998	-1.4588	-0.00072905	499.7665158496713	41.923	1.3636	41.949	41.533	42.897	0.026016					111	38	6	0	0	0	0.034407	4	3744	3744;3754;3768;3781		138.06	31.157	1	17937000			80543	2960	56145	56239	89405;89406;89407;89408	89405					0.020399819208023473
TPSASRKSL	9	Unmodified	_TPSASRKSL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7693786621094	2	473.769448	945.524344	0.37989	0.00017998	-0.53618	-0.00025402	-0.15629	-7.4045E-05	473.7691713276474	22.408	0.69661	22.408	22.106	22.803	0					26	14	2	0	0	0	0.16539	2	791	774;791		96.034	26.406	1	1480100			80544	2021	56146	56240	89409;89410	89410					0.049402857834252245
TPSASRKSL	9	Unmodified	_TPSASRKSL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.7693786621094	2	473.769448	945.524344	0.16995	8.0516E-05	-0.3621	-0.00017155	-0.19215	-9.1037E-05	473.7692480263877	22.495	0.65669	22.42	22.082	22.739	-0.075296					25	13	2	0	0	0	0.16539	2	787	787;801		96.034	21.779	1	1460700			80545	2021	56146	56240	89411;89412	89411					0.049402857834252245
TPSASRKSL	9	Unmodified	_TPSASRKSL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.7695007324219	2	473.769448	945.524344	-0.71438	-0.00033845	0.4314	0.00020438	-0.28298	-0.00013407	473.7696237897234	22.267	0.71533	22.341	22.03	22.745	0.073954					26	14	2	0	0	0	0.22379	3	736	715;724;736		85.862	17.075	1	1448300			80546	2021	56146	56240	89413;89414;89415	89415					0.049402857834252245
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.758056640625	2	488.758549	975.502546	-0.67571	-0.00033026	0.76716	0.00037496	0.091455	4.4699E-05	488.75898804242513	43.301	1.3344	43.301	42.786	44.12	0					70	36	4	0	0	0	0.074956	2	4034	4034;4045		119.56	25.55	1	11282000			80547	10138	56147	56241	89416;89417	89416					0.013814810348435458
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7583312988281	2	488.758549	975.502546	-0.62259	-0.0003043	0.94646	0.00046259	0.32387	0.00015829	488.75899349907786	43.466	1.2758	43.326	42.956	44.232	-0.13929					71	35	5	0	0	0	0.049585	1	4045	4045		128.86	43.7	1	10529000			80548	10138	56147	56241	89418	89418					0.013814810348435458
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7583312988281	2	488.758549	975.502546	-0.047003	-2.2973E-05	-0.038293	-1.8716E-05	-0.085296	-4.1689E-05	488.75856266750395	43.36	1.0544	43.39	43.082	44.136	0.030823					60	28	4	0	0	0	0.17455	1	3994	3994		94.006	0	1	11840000			80549	10138	56147	56241	89419	89419					0.013814810348435458
TPSFIGENT	9	Unmodified	_TPSFIGENT_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2853088378906	2	483.232364	964.450176	0.22601	0.00010922	3.4614	0.0016727	3.6874	0.0017819	483.23400512446386	53.968	0.48421	54.066	53.876	54.361	0.098015					17	13	2	0	0	0	0.024288	1	5849	5849		11.636	0	1	121340	+		80550	24185	56148	56242	89420	89420					-0.03347102098746291
TPSFSRMKM	9	Unmodified	_TPSFSRMKM_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.3074951171875	2	542.767537	1083.52052	-0.55353	-0.00030044	4.252	0.0023078	3.6984	0.0020074	542.7696690173132	79.535	0.45967	79.385	79.236	79.696	-0.15051					14	10	2	0	0	0	0.024381	1	9541	9541		45.952	13.14	1	144870	+		80551	23960	56149	56243	89421	89421					-0.01789843306301009
TPSFSSSWLY	10	Unmodified	_TPSFSSSWLY_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.7745971679688	2	587.774396	1173.53424	0.043503	2.557E-05	-0.12847	-7.5509E-05	-0.084964	-4.994E-05	587.7741124383633	80.027	0.5851	79.78	79.488	80.074	-0.2465					33	13	3	0	0	0	0.87795	1	9575	9575		55.504	2.1528	1	594480	+		80552	27572	56150	56244	89422	89422					-0.04558571001848577
TPSFSSSWLY	10	Unmodified	_TPSFSSSWLY_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.7747192382812	2	587.774396	1173.53424	-0.5323	-0.00031287	0.29912	0.00017582	-0.23318	-0.00013706	587.7744088189228	79.948	0.92157	79.728	79.076	79.997	-0.21923					47	21	3	0	0	0	0.91051	1	9589	9589		53.351	0.41475	1	595410	+		80553	27572	56150	56244	89423	89423					-0.04558571001848577
TPSFSSSWLY	10	Unmodified	_TPSFSSSWLY_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	587.774396	1173.53424	0.043503	2.557E-05	-0.12847	-7.5509E-05	-0.084964	-4.994E-05	587.7741124383633	80.027	0.5851	79.78	79.488	80.074	-0.2465	0.024572	-0.00032015	NaN	55.504	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	594480	+		80554	27572	56150	56244							-0.04558571001848577
TPSFSSSWLY	10	Unmodified	_TPSFSSSWLY_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	587.774396	1173.53424	-0.5323	-0.00031287	0.29912	0.00017582	-0.23318	-0.00013706	587.7744088189228	79.948	0.92157	79.728	79.076	79.997	-0.21923	-0.027288	0.0001825	NaN	55.504	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595410	+		80555	27572	56150	56244							-0.04558571001848577
TPSGSREGSL	10	Unmodified	_TPSGSREGSL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.74591064453125	2	495.74617	989.477788	-0.24228	-0.00012011	-0.02699	-1.338E-05	-0.26927	-0.00013349	495.74610566513815	25.8	0.87913	25.8	25.527	26.406	0					51	20	4	0	0	0	0.44183	2	1255	1255;1265		94.409	28.944	1	1308600			80556	1047	56151	56245	89424;89425	89424					-0.01737198838520726
TPSGSREGSL	10	Unmodified	_TPSGSREGSL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.74603271484375	2	495.74617	989.477788	-0.59323	-0.00029409	0.26937	0.00013354	-0.32386	-0.00016055	495.74624012175434	25.823	0.88047	25.8	25.403	26.283	-0.023087					50	20	4	0	0	0	0.3672	2	1265	1252;1265		102.06	33.215	1	1293400			80557	1047	56151	56245	89426;89427	89427					-0.01737198838520726
TPSGSREGSL	10	Unmodified	_TPSGSREGSL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.74617	989.477788	0.28534	0.00014146	-0.72138	-0.00035762	-0.43604	-0.00021616	495.74579930838235	25.512	0.54558	25.592	25.377	25.922	0.08009	-0.13847	-0.00060664	NaN	102.06	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398630			80558	1047	56151	56245							-0.01737198838520726
TPSHLFTL	8	Unmodified	_TPSHLFTL_					0	0	0		nc|ENSG998|Q9N2K0|HERV-H-ENH1	nc|ENSG998|Q9N2K0|HERV-H-ENH1	nc|ENSG998|Q9N2K0|HERV-H-ENH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.763916015625	2	458.25036	914.486168	-0.02057	-9.4261E-06	-1.773	-0.00081247	-1.7935	-0.00082189	458.24821144797914	36.485	0.84321	36.485	36.162	37.005	0					40	22	3	0	0	0	0.027866	1	2861	2861		25.45	0	1	180380			80559	18855	56152	56246	89428	89428					0.025503998687554486
TPSITLSQV	9	Unmodified	_TPSITLSQV_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8;nc|ENSG00000215529|A8MWE9|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.2666320800781	2	473.266207	944.517862	0.27369	0.00012953	-0.10396	-4.92E-05	0.16973	8.033E-05	473.2660306892627	74.285	0.81999	74.009	73.777	74.597	-0.27573					40	22	2	0	0	0	0.067814	1	8737	8737		122.18	12.056	1	3560000			80560	10590	56153	56247	89429	89429					0.04338347832060663
TPSKKTSTP	9	Unmodified	_TPSKKTSTP_					0	0	0		ENSG00000198887|ENST00000361138|SMC5;SMC5|p.T702Nfs*28|1|0.47|ENSG00000198887|chr9:70318912-70318913|-/A|frameshift_variant	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.25341796875	2	473.763832	945.513111	-0.45705	-0.00021653	0.95652	0.00045316	0.49947	0.00023663	473.764006331421	30.269	0.4933	30.269	30.057	30.55	0					15	11	2	0	0	0	0.024319	1	1968	1968		56.721	0	1	90267			80561	10237	56154	56248	89430	89430					0.03817463689279066
TPSKRLTL	8	Unmodified	_TPSKRLTL_					0	0	0			REV__ENST00000590307.1_1_18:77636237-77659813:+|nuORF	REV__ENST00000590307.1_1_18:77636237-77659813:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.24822998046875	2	458.284734	914.554916	-0.75893	-0.00034781	1.1342	0.00051976	0.37522	0.00017196	458.28500551249414	30.778	0.62082	30.778	30.426	31.047	0					29	14	3	0	0	0	0.027866	1	1995	1995		96.19	19.416	1	466220	+		80562	35699	56155	56249	89431	89431					0.09422064168461475
TPSLTKRI	8	Unmodified	_TPSLTKRI_					0	0	0		nc|ENSG00000293247|Q96P09|BIRC8	nc|ENSG00000293247|Q96P09|BIRC8	nc|ENSG00000293247|Q96P09|BIRC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2486267089844	2	458.284734	914.554916	-0.29367	-0.00013458	0.75455	0.0003458	0.46088	0.00021122	458.2848232421146	30.718	0.75626	30.727	30.455	31.211	0.0086708					37	17	3	0	0	0	0.027866	1	1964	1964		71.296	10.324	1	552200			80563	18842	56156	56250	89432	89432					0.09422064168484212
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	580.8295288085938	2	580.829703	1159.64485	-1.5271	-0.00088697	0.94306	0.00054775	-0.58402	-0.00033922	580.8302492703679	47.691	1.7532	47.691	47.111	48.864	0					135	51	5	0	0	0	1.011E-09	5	4841	4791;4802;4815;4828;4841		204.79	111.59	1	15946000			80564	4889	56157	56251	89433;89434;89435;89436;89437	89437					0.07141648986407745
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	580.82861328125	2	580.829703	1159.64485	-0.96984	-0.00056331	0.34122	0.00019819	-0.62862	-0.00036512	580.8298429972615	47.872	1.5632	47.719	47.336	48.9	-0.15301					124	45	5	0	0	0	3.3208E-13	5	4840	4793;4803;4815;4827;4840		223.87	124.1	1	17859000			80565	4889	56157	56251	89438;89439;89440;89441;89442	89442					0.07141648986407745
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	580.8297729492188	2	580.829703	1159.64485	-0.76102	-0.00044203	0.19344	0.00011236	-0.56759	-0.00032967	580.829821510085	47.592	1.5421	47.652	47.179	48.721	0.059093					105	44	5	0	0	0	3.547E-10	5	4721	4710;4721;4735;4747;4760		210.64	112.06	1	17396000			80566	4889	56157	56251	89443;89444;89445;89446;89447	89444					0.07141648986407745
TPSPARPAL	9	Unmodified	_TPSPARPAL_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.2608337402344	2	455.261259	908.507966	0.15163	6.9032E-05	-1.3207	-0.00060125	-1.169	-0.00053222	455.26053615575375	38.986	1.1315	38.986	38.639	39.771	0					70	31	3	0	0	0	0.14024	2	3305	3305;3315		101.6	8.4052	1	3943900			80567	7694	56158	56252	89448;89449	89448					0.050052046173163944
TPSPARPAL	9	Unmodified	_TPSPARPAL_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.2607727050781	2	455.261259	908.507966	-0.42297	-0.00019256	-0.67689	-0.00030816	-1.0999	-0.00050072	455.26082726257874	38.994	1.2532	38.895	38.475	39.728	-0.098755					74	34	3	0	0	0	0.16638	3	3298	3287;3298;3309		95.815	8.1293	1	3705100			80568	7694	56158	56252	89450;89451;89452	89451					0.050052046173163944
TPSPARPAL	9	Unmodified	_TPSPARPAL_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.2607421875	2	455.261259	908.507966	-0.6796	-0.00030939	-0.31209	-0.00014208	-0.99168	-0.00045148	455.2609267964083	39.139	1.721	39.163	38.807	40.528	0.023727					92	47	3	0	0	0	0.14024	3	3288	3276;3288;3301		101.6	8.4052	1	3727500			80569	7694	56158	56252	89453;89454;89455	89454					0.050052046173163944
TPSPARPAL	9	Unmodified	_TPSPARPAL_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	455.261259	908.507966	-0.047354	-2.1558E-05	1.3105	0.00059661	1.2631	0.00057505	455.26208259224575	38.89	0.73537	38.664	38.361	39.096	-0.2257	-0.26259	0.0019104	NaN	101.6	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94543			80570	7694	56158	56252							0.050052046173163944
TPSPKSAFF	9	Unmodified	_TPSPKSAFF_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2610778808594	2	491.255643	980.496732	-0.43301	-0.00021272	-4.1647	-0.0020459	-4.5977	-0.0022586	491.25363343680465	40.07	1.3138	39.958	39.677	40.991	-0.11223					96	35	5	0	0	0	0.31037	1	3501	3501		74.255	2.3776	1	10025000	+		80571	22090	56159	56253	89456	89456					0.005703825231876181
TPSPTRYSL	9	Unmodified	_TPSPTRYSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.26885986328125	2	511.269281	1020.52401	-1.1002	-0.00056248	0.39776	0.00020336	-0.70241	-0.00035912	511.26932095029196	44.09	1.1798	43.945	43.279	44.459	-0.1447					91	33	4	0	0	0	0.087669	1	4163	4163		114.89	35.182	1	2449200			80572	6328	56160	56254	89457	89457					0.0145686606357458
TPSPTRYSL	9	Unmodified	_TPSPTRYSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.269281	1020.52401	-0.47447	-0.00024258	-0.17801	-9.1011E-05	-0.65248	-0.00033359	511.26906922688545	43.98	1.1784	44.017	43.197	44.375	0.0369	0.035928	-0.0002335	NaN	114.89	69	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2205900			80573	6328	56160	56254							0.0145686606357458
TPSQFSNAR	9	Unmodified	_TPSQFSNAR_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7694396972656	2	504.24888	1006.48321	-0.30244	-0.0001525	-1.6493	-0.00083165	-1.9517	-0.00098416	504.2480094985933	42.944	2.5409	42.805	41.312	43.853	-0.13929					153	71	4	0	0	0	0.024323	1	4018	4018		44.117	0	1	1102200	+		80574	36675	56161	56255	89458	89458					-0.019774752560579145
TPSQLRTL	8	Unmodified	_TPSQLRTL_					0	0	0		nc|ENSG00000117090|Q13291-4|SLAMF1	nc|ENSG00000117090|Q13291-4|SLAMF1	nc|ENSG00000117090|Q13291-4|SLAMF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.24822998046875	2	458.266542	914.51853	-0.7951	-0.00036437	0.48895	0.00022407	-0.30614	-0.0001403	458.2667870919297	30.622	0.53747	30.622	30.3	30.838	0					13	12	2	0	0	0	0.027866	1	1995	1995		96.19	2.184	1	43313			80575	18197	56162	56256	89459	89459					0.05785187271760606
TPSRKGLVL	9	Unmodified	_TPSRKGLVL_					0	0	0		ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENSG00000161956|ENST00000321337|SENP3	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.80657958984375	2	485.805834	969.597115	-0.55959	-0.00027185	0.29343	0.00014255	-0.26616	-0.0001293	485.8059209527943	34.494	1.1023	34.494	34.168	35.27	0					75	28	4	0	0	0	0.48817	2	2564	2564;2588		60.118	10.094	1	4612900			80576	6904	56163	56257	89460;89461	89460					0.11110039576851705
TPSRKGLVL	9	Unmodified	_TPSRKGLVL_					0	0	0		ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENSG00000161956|ENST00000321337|SENP3	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.8064270019531	2	485.805834	969.597115	-0.14106	-6.8526E-05	-0.30769	-0.00014948	-0.44874	-0.000218	485.80556673210566	34.284	1.1141	34.279	33.988	35.102	-0.0045624					66	28	4	0	0	0	0.40693	1	2525	2525		65.465	16.024	1	4371900			80577	6904	56163	56257	89462	89462					0.11110039576851705
TPSRTLLL	8	Unmodified	_TPSRTLLL_					0	0	0			REV__nc|ENSG00000284194|O43819|SCO2	REV__nc|ENSG00000284194|O43819|SCO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2389221191406	2	450.779285	899.544017	-0.6204	-0.00027967	-0.31912	-0.00014385	-0.93952	-0.00042352	450.7789727961434	23.853	0.3442	23.806	23.656	24	-0.047148					13	7	2	0	0	0	0.027866	1	985	985		47.916	0	1	64979	+		80578	37207	56164	56258	89463	89463					0.09022661794188025
TPSSDPENAL	10	Unmodified	_TPSSDPENAL_					0	0	0		ENSG00000188419|ENST00000357749|CHM	ENSG00000188419|ENST00000357749|CHM	ENSG00000188419|ENST00000357749|CHM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2794189453125	2	515.738011	1029.46147	-0.11538	-5.9504E-05	1.3478	0.0006951	1.2324	0.0006356	516.2415365045092	55.355	0.25814	55.124	54.997	55.255	-0.23087					10	7	2	0	0	0	0.03519	1	5932	5932		34.173	0	1	62062			80579	9719	56165	56259	89464	89464					-0.0520832479528508
TPSSHLLNL	9	Unmodified	_TPSSHLLNL_					0	0	0		ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2610778808594	2	491.271824	980.529095	-0.86575	-0.00042532	0.36244	0.00017806	-0.50331	-0.00024726	491.2717512861738	39.482	1.5174	39.384	38.591	40.108	-0.098751					108	41	4	0	0	0	0.023007	1	3501	3501		66.429	0	1	936470			80580	15818	56166	56260	89465	89465					0.03805169926170038
TPSSHLLNL	9	Unmodified	_TPSSHLLNL_					0	0	0		ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	491.271824	980.529095	-1.0155	-0.0004989	0.47283	0.00023229	-0.5427	-0.00026661	491.2718182878986	39.675	1.0958	39.699	38.882	39.978	0.023727	0.20848	0.00014313	NaN	66.429	56	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049700			80581	15818	56166	56260							0.03805169926170038
TPSSHLLNL	9	Unmodified	_TPSSHLLNL_					0	0	0		ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.271824	980.529095	-0.82496	-0.00040528	1.0812	0.00053116	0.25624	0.00012588	491.2722546015181	39.564	0.87057	39.399	38.898	39.768	-0.16459	-0.0912	0.00074088	NaN	66.429	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573540			80582	15818	56166	56260							0.03805169926170038
TPSSHLLNL	9	Unmodified	_TPSSHLLNL_					0	0	0		ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	ENST00000510230.1_1_5:134786355-134794140:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.271824	980.529095	-0.24371	-0.00011973	0.36538	0.0001795	0.12167	5.9773E-05	491.27200310139506	39.733	1.921	39.51	38.891	40.812	-0.22311	0.019684	3.7554E-05	NaN	66.429	78	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338030			80583	15818	56166	56260							0.03805169926170038
TPSSPSMEF	9	Unmodified	_TPSSPSMEF_					0	0	0			REV__nc|ENSG00000144445|A0AUZ9-4|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-4|KANSL1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2610778808594	2	491.71295	981.411348	-1.0111	-0.00049717	-1.8606	-0.00091486	-2.8716	-0.001412	491.7116883675079	39.697	0.83957	39.585	39.255	40.095	-0.11223					42	22	2	0	0	0	0.023775	1	3501	3501		57.811	2.3071	1	1094600	+		80584	24335	56167	56261	89466	89466					-0.08010150724783216
TPSSPSMEF	9	Unmodified	_TPSSPSMEF_					0	0	0			REV__nc|ENSG00000144445|A0AUZ9-4|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-4|KANSL1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.71295	981.411348	-0.21688	-0.00010664	0.92982	0.00045721	0.71295	0.00035057	491.71325005062556	39.968	0.57726	39.738	39.391	39.968	-0.2302	0.072135	0.00058984	NaN	57.811	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203770	+		80585	24335	56167	56261							-0.08010150724783216
TPSTPVRP	8	Unmodified	_TPSTPVRP_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.7401428222656	2	427.74016	853.465767	-0.84786	-0.00036266	1.5083	0.00064516	0.66044	0.0002825	427.740608936635	22.076	0.77537	22.15	21.735	22.51	0.073954					32	15	3	0	0	0	0.81662	1	704	704		57.811	0	1	314200	+		80586	24353	56168	56262	89467	89467					0.03317229208948902
TPSTRLQL	8	Unmodified	_TPSTRLQL_					0	0	0			REV__ENST00000366835.7_1_1:226059699-226067035:-|nuORF	REV__ENST00000366835.7_1_1:226059699-226067035:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2486267089844	2	458.266542	914.51853	-0.32246	-0.00014777	0.010441	4.7849E-06	-0.31202	-0.00014299	458.2663787301493	30.605	0.37339	30.613	30.414	30.787	0.0086689					10	8	2	0	0	0	0.027866	1	1964	1964		84.916	16.129	1	29991	+		80587	30990	56169	56263	89468	89468					0.05785187271760606
TPSTRLQL	8	Unmodified	_TPSTRLQL_					0	0	0			REV__ENST00000366835.7_1_1:226059699-226067035:-|nuORF	REV__ENST00000366835.7_1_1:226059699-226067035:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.24822998046875	2	458.266542	914.51853	-0.42826	-0.00019626	-0.13108	-6.0068E-05	-0.55934	-0.00025633	458.26614059344774	30.365	0.20718	30.44	30.337	30.544	0.074314					7	4	2	0	0	0	0.027866	1	1882	1882		84.916	16.129	1	32958	+		80588	30990	56169	56263	89469	89469					0.05785187271760606
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.2537841796875	2	491.253631	980.49271	0.35019	0.00017203	-0.99997	-0.00049124	-0.64977	-0.0003192	491.2531916717662	39.98	1.2105	39.98	39.733	40.944	0					92	33	5	0	0	0	0.079716	4	3476	3466;3476;3487;3501		117.81	48.965	1	9188800		+	80589	520;569;17808	56170	56264	89470;89471;89472;89473	89471					0.0016829302948053737
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.25408935546875	2	491.253631	980.49271	-0.43301	-0.00021272	-0.070319	-3.4544E-05	-0.50333	-0.00024726	491.25363343680465	40.07	1.3138	39.958	39.677	40.991	-0.11223					96	35	5	0	0	0	0.11727	3	3476	3464;3476;3488		106.68	21.522	1	10025000		+	80590	520;569;17808	56170	56264	89474;89475;89476	89475					0.0016829302948053737
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.25439453125	2	491.253631	980.49271	-0.94087	-0.0004622	0.61669	0.00030295	-0.32418	-0.00015925	491.2539622442045	40.232	1.0626	40.255	39.977	41.04	0.023006					79	29	5	0	0	0	0.11727	3	3466	3444;3454;3466		106.68	16.321	1	10379000		+	80591	520;569;17808	56170	56264	89477;89478;89479	89479					0.0016829302948053737
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.253631	980.49271	-0.93984	-0.0004617	2.5102	0.0012331	1.5703	0.00077144	491.25462500561366	40.208	0.56217	40.058	39.591	40.153	-0.1497	-0.011046	0.0023655	NaN	117.81	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247640		+	80592	520;569;17808	56170	56264							0.0016829302948053737
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.253631	980.49271	-0.04751	-2.3339E-05	2.7418	0.0013469	2.6943	0.0013236	491.25482499981445	40.304	0.5233	40.079	39.773	40.296	-0.225	0.0093486	0.0025931	NaN	117.81	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213120		+	80593	520;569;17808	56170	56264							0.0016829302948053737
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.253631	980.49271	-0.79078	-0.00038847	2.4421	0.0011997	1.6513	0.00081123	491.2550364248866	40.317	0.34306	40.086	39.93	40.273	-0.23021	0.017093	0.0022987	NaN	117.81	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200780		+	80594	520;569;17808	56170	56264							0.0016829302948053737
TPTAFFLILS	10	Unmodified	_TPTAFFLILS_					0	0	0			REV__ENST00000468507.1_1_1:157648751-157659660:-|nuORF	REV__ENST00000468507.1_1_1:157648751-157659660:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.7785034179688	2	555.3157	1108.61685	-0.13771	-7.6472E-05	3.174	0.0017626	3.0363	0.0016861	555.3180983809683	58.558	0.28526	58.37	58.223	58.509	-0.18795					9	6	2	0	0	0	0.03519	1	6429	6429		25.574	0	1	269110	+		80595	33107	56171	56265	89480	89480					0.06688370796950949
TPTDLQLRVLS	11	Unmodified	_TPTDLQLRVLS_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|74|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|74|2|sense	L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|74|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	3	414.906594	1241.69795	-0.12171	-5.0498E-05	-2.1726	-0.00090141	-2.2943	-0.00095191	414.905759165599	21.171	1.9169	21.171	20.562	22.479	0					106	39	5	0	0	0	0.99648	1	629	629		37.6	0	1	3796700			80596	17854	56172	56266	89481	89481					0.08677026769055374
TPTINYTL	8	Unmodified	_TPTINYTL_					0	0	0		ENSG00000103066|ENST00000219345|PLA2G15;nc|ENSG00000103066|Q8NCC3-2|PLA2G15;ENST00000565460.1_1_16:68289553-68293557:+|nuORF	ENSG00000103066|ENST00000219345|PLA2G15;ENST00000565460.1_1_16:68289553-68293557:+|nuORF	ENSG00000103066|ENST00000219345|PLA2G15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7594299316406	2	461.74765	921.480748	0.22953	0.00010598	-3.0938	-0.0014286	-2.8643	-0.0013226	461.74562787981534	36.743	0.35722	36.781	36.684	37.041	0.038044					13	8	2	0	0	0	0.027866	1	2897	2897		11.511	0	1	139130			80597	2465;16919	56173	56267	89482	89482					0.01686676286283273
TPTKGTHI	8	Unmodified	_TPTKGTHI_					0	0	0			REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.7403259277344	2	427.74016	853.465767	0.64772	0.00027705	-0.39588	-0.00016933	0.25184	0.00010772	427.73991521063635	22.464	1.2131	22.262	21.855	23.069	-0.20199					52	25	3	0	0	0	0.56067	1	760	760		79.939	11.455	1	1955600	+		80598	32295	56174	56268	89483	89483					0.03317229208948902
TPTKGTHI	8	Unmodified	_TPTKGTHI_					0	0	0			REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	427.74016	853.465767	-0.64127	-0.0002743	1.122	0.00047992	0.48072	0.00020562	427.74056587950616	22.178	0.89566	22.178	21.63	22.525	0	-0.024209	0.00092246	NaN	79.939	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250530	+		80599	32295	56174	56268							0.03317229208948902
TPTKGTHI	8	Unmodified	_TPTKGTHI_					0	0	0			REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	427.74016	853.465767	-0.3576	-0.00015296	1.0914	0.00046684	0.73382	0.00031388	427.74040720187753	22.228	0.76104	22.153	21.745	22.506	-0.075296	-0.049578	0.00089631	NaN	79.939	30	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211840	+		80600	32295	56174	56268							0.03317229208948902
TPTKGTHI	8	Unmodified	_TPTKGTHI_					0	0	0			REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	REV__ENST00000427401.8_1_19:20726300-20726477:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	427.74016	853.465767	-0.84786	-0.00036266	1.5083	0.00064516	0.66044	0.0002825	427.740608936635	22.076	0.77537	22.15	21.735	22.51	0.073954	-0.051986	0.0012529	NaN	79.939	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314200	+		80601	32295	56174	56268							0.03317229208948902
TPTQREVI	8	Unmodified	_TPTQREVI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2926330566406	2	472.263999	942.513445	0.47299	0.00022337	-1.612	-0.00076128	-1.139	-0.00053791	472.2632820097585	49.926	0.7343	49.775	49.52	50.254	-0.1512					42	20	3	0	0	0	0.027866	1	5239	5239		34.173	0	1	528300			80602	4580	56175	56269	89484	89484					0.03988883409135724
TPTRHGDHG	9	Unmodified	_TPTRHGDHG_					0	0	0			REV__ENSG00000226887|ENST00000443173|ERVMER34-1	REV__ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7586364746094	2	489.231022	976.447491	0.072057	3.5252E-05	-2.6199	-0.0012817	-2.5479	-0.0012465	489.2293457977053	43.151	0.79888	43.182	42.83	43.629	0.030827					55	21	3	0	0	0	0.024021	1	3982	3982		68.787	5.4806	1	529090	+		80603	28879	56176	56270	89485	89485					-0.04167512713047472
TPTRLKSL	8	Unmodified	_TPTRLKSL_					0	0	0		ENST00000555705.1_1_14:35008764-35008818:-|nuORF	ENST00000555705.1_1_14:35008764-35008818:-|nuORF	ENST00000555705.1_1_14:35008764-35008818:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.24822998046875	2	458.284734	914.554916	-0.33066	-0.00015154	0.62865	0.0002881	0.29798	0.00013656	458.284797101487	30.51	0.57991	30.585	30.254	30.834	0.074314					30	13	3	0	0	0	0.027866	1	1882	1882		71.296	0	1	467140			80604	16688	56177	56271	89486	89486					0.09422064168461475
TPTTRRRQV	9	Unmodified	_TPTTRRRQV_					0	0	0			REV__ENST00000600224.1_1_19:42909662-42909713:-|nuORF	REV__ENST00000600224.1_1_19:42909662-42909713:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2596435546875	2	557.825621	1113.63669	-0.045803	-2.555E-05	-2.8327	-0.0015802	-2.8785	-0.0016057	557.8242605818837	79.665	0.62929	79.514	79.236	79.866	-0.15051					28	14	3	0	0	0	0.024436	1	9505	9505		30.504	1.3541	1	153290	+		80605	35843	56178	56272	89487	89487					0.08441559580273861
TPTTVMCEKY	10	Unmodified	_TPTTVMCEKY_					0	0	0			REV__nc|ENSG00000094841|Q96BW1-3|UPRT	REV__nc|ENSG00000094841|Q96BW1-3|UPRT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7706298828125	2	586.769942	1171.52533	-0.39575	-0.00023222	1.8865	0.0011069	1.4908	0.00087473	586.7707848756055	73.978	0.44438	73.701	73.405	73.849	-0.2769					24	13	3	0	0	0	1.1088	1	8700	8700		31.53	2.3803	1	1326900	+		80606	20950	56179	56273	89488	89488					-0.05357003954213724
TPVAGSQSL	9	Unmodified	_TPVAGSQSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.22991943359375	2	430.229625	858.444697	0.062102	2.6718E-05	0.51675	0.00022232	0.57885	0.00024904	430.2297965994174	42.867	1.2963	42.727	42.278	43.575	-0.13929					88	35	4	0	0	0	0.016871	1	3955	3955		152.47	26.657	1	8392300			80607	7760	56180	56274	89489	89489					0.009812191094397349
TPVAGSQSL	9	Unmodified	_TPVAGSQSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.2300109863281	2	430.229625	858.444697	0.52456	0.00022568	0.055021	2.3672E-05	0.57958	0.00024935	430.22959922038194	42.758	1.4474	42.784	42.323	43.77	0.026012					92	39	4	0	0	0	0.057894	1	3904	3904		125.81	12.402	1	8824600			80608	7760	56180	56274	89490	89490					0.009812191094397349
TPVAIRVV	8	Unmodified	_TPVAIRVV_					0	0	0			REV__OR4M1|p.C189Vfs*9|1|0.12|ENSG00000176299|chr14:19780887-19780887|T/-|frameshift_variant	REV__OR4M1|p.C189Vfs*9|1|0.12|ENSG00000176299|chr14:19780887-19780887|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7401428222656	2	427.776545	853.538538	-0.80361	-0.00034377	0.66062	0.0002826	-0.143	-6.1171E-05	427.77662187719886	22.275	0.28841	22.349	22.125	22.413	0.073954					6	5	2	0	0	0	0.027866	1	704	704		42.474	0	1	4100	+		80609	37316	56181	56275	89491	89491					0.10590983002373378
TPVGTKVI	8	Unmodified	_TPVGTKVI_					0	0	0			REV__nc|ENSG00000144724|P23470-2|PTPRG	REV__nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.75555419921875	2	407.755278	813.496004	-0.14501	-5.9129E-05	0.19047	7.7666E-05	0.04546	1.8536E-05	407.75519432372323	38.89	0.81245	38.667	38.374	39.186	-0.22311					52	21	4	0	0	0	0.53523	1	3244	3244		82.305	0.064519	1	2583100	+		80610	24354	56182	56276	89492	89492					0.08179587874133176
TPVITTAPET	10	Unmodified	_TPVITTAPET_					0	0	0			REV__nc|ENSG00000187955|Q05707-3|COL14A1	REV__nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2944946289062	2	515.276772	1028.53899	-0.26603	-0.00013708	0.20002	0.00010306	-0.066013	-3.4015E-05	515.2769518558408	53.676	0.60613	53.479	53.163	53.769	-0.19739					29	17	2	0	0	0	0.03519	1	5650	5650		25.574	0	1	529210	+		80611	27995	56183	56277	89493	89493					0.025863131408868867
TPVKLGSI	8	Unmodified	_TPVKLGSI_					0	0	0			REV__ENST00000484020.1_1_2:97261350-97267559:-|nuORF	REV__ENST00000484020.1_1_2:97261350-97267559:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.7550964355469	2	407.755278	813.496004	-0.92141	-0.00037571	1.0704	0.00043646	0.14898	6.0748E-05	407.7555368545553	38.771	0.90772	38.607	38.32	39.228	-0.16458					51	24	3	0	0	0	0.53523	1	3248	3248		82.305	0	1	2746400	+		80612	33527	56184	56278	89494	89494					0.08179587874133176
TPVLLEKKSPL	11	Unmodified	_TPVLLEKKSPL_					0	0	0		ENST00000462351.5_1_2:220160899-220172331:-|nuORF;nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN	ENST00000462351.5_1_2:220160899-220172331:-|nuORF	ENST00000462351.5_1_2:220160899-220172331:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	408.9221496582031	3	408.923585	1223.74892	0.68714	0.00028099	-2.4702	-0.0010101	-1.7831	-0.00072915	408.9219166858065	103.23	2.0858	103.23	102.81	104.89	0					71	52	2	0	0	0	1.0327	1	13262	13262		29.551	1.4693	1	819460			80613	1173	56185	56279	89495	89495					0.14599975813894162
TPVLLEKKSPL	11	Unmodified	_TPVLLEKKSPL_					0	0	0		ENST00000462351.5_1_2:220160899-220172331:-|nuORF;nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN	ENST00000462351.5_1_2:220160899-220172331:-|nuORF	ENST00000462351.5_1_2:220160899-220172331:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	408.9227294921875	3	408.923585	1223.74892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.26	1	103.27	102.77	103.77	0.0054245								0	0	0	1.21	1	13210	13210		30.569	2.4874	1				80614	1173	56185	56279	89496	89496					0.14599975813894162
TPVLRRHRYSI	11	Unmodified	_TPVLRRHRYSI_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MSMS	OPSCC_40_ClassI_Rep-2	5	466.6085510253906	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.61	1	100.48	99.983	100.98	-0.12504								0	0	0	1.4803	1	12492	12492		16.53	0.6092	1				80615	6282	56186	56280	89497	89497					0.12262041493931974
TPVLSPSSIM	10	Unmodified	_TPVLSPSSIM_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2825317382812	2	516.275718	1030.53688	-0.69856	-0.00036065	1.4437	0.00074537	0.74518	0.00038472	516.2761199131108	81.256	0.6125	81.256	81.017	81.63	0					31	14	3	0	0	0	1.1267	1	10128	10128		29.15	0	1	428880			80616	9221	56187	56281	89498	89498					0.022835611314576454
TPVLSPSSIM	10	Unmodified	_TPVLSPSSIM_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.275718	1030.53688	-0.83077	-0.00042891	1.5444	0.00079734	0.71364	0.00036844	516.276282439442	81.459	0.52961	81.328	81.055	81.584	-0.13075	0.10043	0.00056659	NaN	29.15	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452360			80617	9221	56187	56281							0.022835611314576454
TPVLSPSSIM	10	Unmodified	_TPVLSPSSIM_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.275718	1030.53688	-1.2163	-0.00062793	2.251	0.0011621	1.0348	0.00053422	516.2764673814047	81.286	0.61157	81.309	81.046	81.658	0.023911	0.081623	0.0012962	NaN	29.15	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457550			80618	9221	56187	56281							0.022835611314576454
TPVLSPSSIM	10	Unmodified	_TPVLSPSSIM_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.275718	1030.53688	0.11335	5.852E-05	-0.71108	-0.00036712	-0.59773	-0.0003086	516.2748885509494	81.354	0.54039	81.126	80.939	81.479	-0.2289	-0.10227	-0.0017623	NaN	29.15	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154270			80619	9221	56187	56281							0.022835611314576454
TPVLSPSSIM	10	Unmodified	_TPVLSPSSIM_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.275718	1030.53688	0.31527	0.00016276	-0.68225	-0.00035223	-0.36698	-0.00018947	516.2751107665795	81.337	0.45283	81.144	80.966	81.419	-0.19333	-0.08421	-0.0017326	NaN	29.15	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108070			80620	9221	56187	56281							0.022835611314576454
TPVLSPSSIM	10	Unmodified	_TPVLSPSSIM_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.275718	1030.53688	-0.35301	-0.00018225	-0.866	-0.00044709	-1.219	-0.00062934	516.2749699798756	81.346	0.54092	81.204	80.942	81.483	-0.14249	-0.024191	-0.0019223	NaN	29.15	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90317			80621	9221	56187	56281							0.022835611314576454
TPVPCATSR	9	Unmodified	_TPVPCATSR_					0	0	0			REV__ENST00000248958.4_1_22:21998288-21998567:+|nuORF	REV__ENST00000248958.4_1_22:21998288-21998567:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.2359619140625	2	466.236927	930.459301	0.51398	0.00023964	0.50636	0.00023608	1.0203	0.00047572	466.2371934475637	29.04	1.597	29.119	28.205	29.802	0.078344					126	39	4	0	0	0	0.67687	1	1704	1704		47.657	0	1	6036700	+		80622	29486	56188	56282	89499	89499					-0.008710320140721706
TPVPSVKP	8	Unmodified	_TPVPSVKP_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.2375793457031	2	412.747453	823.480354	0.3295	0.000136	2.9457	0.0012158	3.2752	0.0013518	412.74613330208774	89.875	0.81575	89.875	89.44	90.255	0					29	19	2	0	0	0	0.027866	1	11310	11310		18.324	0	1	84194			80623	8953	56189	56283	89500	89500					0.06155301357091503
TPVQRLLT	8	Unmodified	_TPVQRLLT_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.28466796875	2	464.284734	926.554916	1.9392	0.00090036	-2.668	-0.0012387	-0.72874	-0.00033834	464.28349537622915	24.681	0.99345	24.5	24.198	25.191	-0.18089					43	22	4	0	0	0	1.0514	1	1091	1091		29.17	1.2878	1	2468300	+		80624	36517	56190	56284	89501	89501					0.08870064168456793
TPVQRTPL	8	Unmodified	_TPVQRTPL_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2695007324219	2	456.269084	910.523616	0.05305	2.4205E-05	-0.70287	-0.0003207	-0.64982	-0.00029649	456.26878214586753	45.083	1.677	45.127	44.756	46.433	0.043877					102	48	4	0	0	0	0.26074	1	4328	4328		128.82	17.167	1	26588000			80625	1610	56191	56285	89502	89502					0.06477491134376123
TPVSDLHNL	9	Unmodified	_TPVSDLHNL_					0	0	0			REV__nc|ENSG00000165383|Q8N456-2|LRRC18	REV__nc|ENSG00000165383|Q8N456-2|LRRC18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2721252441406	2	498.261456	994.50836	0.25003	0.00012458	-1.9944	-0.00099373	-1.7444	-0.00086914	498.2603114660938	89.567	0.66961	89.583	89.257	89.926	0.01535					42	15	3	0	0	0	0.024294	1	11238	11238		29.15	0	1	655250	+		80626	25881	56192	56286	89503	89503					0.010885795465128467
TPVTHTYHV	9	Unmodified	_TPVTHTYHV_					0	0	0		ENST00000267406.10_1_14:24897604-24898679:-|nuORF	ENST00000267406.10_1_14:24897604-24898679:-|nuORF	ENST00000267406.10_1_14:24897604-24898679:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3058471679688	2	527.769448	1053.52434	-1.1873	-0.00062662	-2.5501	-0.0013459	-3.7374	-0.0019725	527.7676627447565	31.594	0.48158	31.594	31.428	31.91	0					17	11	2	0	0	0	0.024487	1	2151	2151		31.955	2.7848	1	82641			80627	11618	56193	56287	89504	89504					-0.00027714216571439465
TPVTIIIPK	9	Unmodified	_TPVTIIIPK_					0	0	0		ENST00000282397.8_1_13:28979936-29001362:-|nuORF	ENST00000282397.8_1_13:28979936-29001362:-|nuORF	ENST00000282397.8_1_13:28979936-29001362:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2986145019531	2	491.320786	980.627018	-0.66061	-0.00032457	0.60245	0.000296	-0.058165	-2.8577E-05	491.32094854988685	60.42	0.71577	60.244	59.998	60.714	-0.1761					36	17	3	0	0	0	0.024397	1	6746	6746		31.53	3.6476	1	895490			80628	11728	56194	56288	89505	89505					0.1359297852218333
TPVTPPSWAT	10	Unmodified	_TPVTPPSWAT_					0	0	0			REV__ENST00000420902.1_1_22:50008608-50009004:-|nuORF	REV__ENST00000420902.1_1_22:50008608-50009004:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.822021484375	2	528.771657	1055.52876	0.025265	1.3359E-05	1.9267	0.0010188	1.9519	0.0010321	529.2747667946752	32.656	0.1506	32.719	32.616	32.766	0.062885					5	3	2	0	0	0	0.03519	1	2222	2222		25.574	0	1	78792	+		80629	32172	56195	56289	89506	89506					0.00321750206330762
TPVTVDMENI	10	Unmodified	_TPVTVDMENI_					0	0	0		CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant;ENSG00000080200|ENST00000389622|CRYBG3	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	CRYBG3|p.C2866Sfs*31|1|0.2|ENSG00000080200|chr3:97941239-97941239|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3248901367188	2	559.773539	1117.53253	0.11322	6.3376E-05	2.6308	0.0014727	2.744	0.001536	559.775722534099	68.011	0.38631	68.011	67.792	68.179	0					15	9	2	0	0	0	0.03519	1	8148	8148		30.318	0	1	206640			80630	590	56196	56290	89507	89507					-0.021539480821274992
TPVVELVV	8	Unmodified	_TPVVELVV_					0	0	0		nc|ENSG00000118946|O14917-2|PCDH17;ENSG00000118946|ENST00000377918|PCDH17	nc|ENSG00000118946|O14917-2|PCDH17	nc|ENSG00000118946|O14917-2|PCDH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2613525390625	2	428.262936	854.51132	0.10911	4.6729E-05	-2.7902	-0.0011949	-2.6811	-0.0011482	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0574	1	11490	11490		21.702	1.2205	1	88816000			80631	3711	56197	56291	89508	89508					0.0782445467133357
TPVVKSAL	8	Unmodified	_TPVVKSAL_					0	0	0		nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.7555847167969	2	407.755278	813.496004	-0.92141	-0.00037571	1.0704	0.00043646	0.14898	6.0748E-05	407.7555368545553	38.771	0.90772	38.607	38.32	39.228	-0.16458					51	24	3	0	0	0	0.28835	2	3221	3221;3233		116.9	16.324	1	2746400			80632	3036	56198	56292	89509;89510	89509					0.08179587874133176
TPVVKSAL	8	Unmodified	_TPVVKSAL_					0	0	0		nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	407.7553405761719	2	407.755278	813.496004	-0.14501	-5.9129E-05	0.19047	7.7666E-05	0.04546	1.8536E-05	407.75519432372323	38.89	0.81245	38.667	38.374	39.186	-0.22311					52	21	4	0	0	0	0.34573	1	3232	3232		104.75	10.74	1	2583100			80633	3036	56198	56292	89511	89511					0.08179587874133176
TPVVKSAL	8	Unmodified	_TPVVKSAL_					0	0	0		nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	407.75579833984375	2	407.755278	813.496004	-0.14682	-5.9866E-05	0.23539	9.5981E-05	0.08857	3.6115E-05	407.7552513278003	38.844	0.77187	38.619	38.361	39.132	-0.2257					50	20	4	0	0	0	0.30694	3	3228	3217;3228;3240		110.12	16.324	1	2821700			80634	3036	56198	56292	89512;89513;89514	89513					0.08179587874133176
TPVVKSAL	8	Unmodified	_TPVVKSAL_					0	0	0		nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	407.755278	813.496004	0.4528	0.00018463	-0.6675	-0.00027218	-0.2147	-8.7544E-05	407.7549291075394	38.745	0.7044	38.745	38.515	39.219	0	0.044992	-0.00043722	NaN	116.9	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1708000			80635	3036	56198	56292							0.08179587874133176
TPVVKSAL	8	Unmodified	_TPVVKSAL_					0	0	0		nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	407.755278	813.496004	0.062478	2.5476E-05	-0.25062	-0.00010219	-0.18814	-7.6716E-05	407.75507843736017	38.756	0.90604	38.657	38.398	39.304	-0.098755	-0.042675	-9.7249E-05	NaN	116.9	52	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1653100			80636	3036	56198	56292							0.08179587874133176
TPVVKSAL	8	Unmodified	_TPVVKSAL_					0	0	0		nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	nc|ENSG00000110330|Q13490-2|BIRC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	407.755278	813.496004	0.22725	9.2663E-05	-0.59796	-0.00024382	-0.3707	-0.00015116	407.75493380959256	38.878	0.80235	38.905	38.691	39.494	0.027275	0.20492	-0.0003805	NaN	116.9	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1790000			80637	3036	56198	56292							0.08179587874133176
TPVVTIFF	8	Unmodified	_TPVVTIFF_					0	0	0			REV__ENSG00000113593|ENST00000261308|PPWD1	REV__ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7594299316406	2	462.265479	922.516405	0.40535	0.00018738	2.8275	0.001307	3.2328	0.0014944	462.268652337953	36.964	0.58051	36.999	36.8	37.38	0.035172					31	14	3	0	0	0	0.027866	1	2897	2897		19.36	6.4008	1	344330	+		80638	22075	56199	56293	89515	89515					0.052047585339551006
TPVVTIFF	8	Unmodified	_TPVVTIFF_					0	0	0			REV__ENSG00000113593|ENST00000261308|PPWD1	REV__ENSG00000113593|ENST00000261308|PPWD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.265479	922.516405	0.24629	0.00011385	2.9654	0.0013708	3.2117	0.0014846	462.2687603783508	36.918	0.49418	36.854	36.669	37.163	-0.063389	-0.072216	6.3825E-05	NaN	44.531	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287710	+		80639	22075	56199	56293							0.052047585339551006
TPVVVEVL	8	Unmodified	_TPVVVEVL_					0	0	0			REV__nc|ENSG00000144115|Q86YJ6-5|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-5|THNSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2618713378906	2	428.262936	854.51132	-0.84173	-0.00036048	-1.8293	-0.00078343	-2.671	-0.0011439	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0574	1	11447	11447		24.203	0	1	86056000	+		80640	24312	56200	56294	89516	89516					0.0782445467133357
TPVVVEVL	8	Unmodified	_TPVVVEVL_					0	0	0			REV__nc|ENSG00000144115|Q86YJ6-5|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-5|THNSL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2617492675781	2	428.262936	854.51132	0.10911	4.6729E-05	-2.7902	-0.0011949	-2.6811	-0.0011482	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0338	2	11441	11441;11467		31.955	5.0938	1	88816000	+		80641	24312	56200	56294	89517;89518	89517					0.0782445467133357
TPVVVEVL	8	Unmodified	_TPVVVEVL_					0	0	0			REV__nc|ENSG00000144115|Q86YJ6-5|THNSL2	REV__nc|ENSG00000144115|Q86YJ6-5|THNSL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.2621765136719	2	428.262936	854.51132	0.60688	0.0002599	-3.4974	-0.0014978	-2.8905	-0.0012379	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.0574	1	11016	11016		25.45	3.7478	1	63872000	+		80642	24312	56200	56294	89519	89519					0.0782445467133357
TPVWTEYES	9	Unmodified	_TPVWTEYES_					0	0	0		ENST00000478895.1_1_10:135169240-135170497:-|nuORF;nc|ENSG00000148803|A2VDF0-2|FUOM;ENSG00000148803|ENST00000278025|FUOM	ENST00000478895.1_1_10:135169240-135170497:-|nuORF	ENST00000478895.1_1_10:135169240-135170497:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.2571411132812	2	556.250754	1110.48696	-0.1478	-8.2214E-05	2.0733	0.0011533	1.9255	0.0010711	556.2516602101323	29.061	0.34807	29.14	28.979	29.327	0.078344					12	8	2	0	0	0	0.024405	1	1718	1718		35.618	5.1146	1	49517			80643	6049	56201	56295	89520	89520					-0.06386850272861011
TPVWTEYES	9	Unmodified	_TPVWTEYES_					0	0	0		ENST00000478895.1_1_10:135169240-135170497:-|nuORF;nc|ENSG00000148803|A2VDF0-2|FUOM;ENSG00000148803|ENST00000278025|FUOM	ENST00000478895.1_1_10:135169240-135170497:-|nuORF	ENST00000478895.1_1_10:135169240-135170497:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	556.250754	1110.48696	-0.51534	-0.00028666	6.0237	0.0033507	5.5084	0.003064	556.2542338189371	29.284	0.34946	29.112	28.85	29.199	-0.17258	-0.014145	0.0018038	NaN	35.618	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28380			80644	6049	56201	56295							-0.06386850272861011
TPWAPRSSRPE	11	Unmodified	_TPWAPRSSRPE_					0	0	0			REV__ENST00000589421.1_1_19:1478470-1478902:-|nuORF	REV__ENST00000589421.1_1_19:1478470-1478902:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2253112792969	3	428.554554	1282.64183	-0.81919	-0.00035107	-0.73089	-0.00031323	-1.5501	-0.00066429	428.55440181007236	25.377	0.68824	25.343	25.121	25.809	-0.034395					28	16	2	0	0	0	0.024738	1	1229	1229		25.068	9.7347	1	266470	+		80645	35676	56202	56296	89521	89521					0.01181818652230504
TPWELTVH	8	Unmodified	_TPWELTVH_					0	0	0		nc|ENSG00000182329|Q0VF49|KIAA2012;ENSG00000182329|ENST00000498697|KIAA2012	nc|ENSG00000182329|Q0VF49|KIAA2012	nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.80352783203125	2	491.753267	981.491981	-1.0368	-0.00050984	-3.182	-0.0015648	-4.2188	-0.0020746	491.75169237079575	35.327	0.73362	35.305	35.013	35.747	-0.021763					39	18	3	0	0	0	0.027866	1	2726	2726		26.796	4.8362	1	643790			80646	9128	56203	56297	89522	89522					0.0004949838041738985
TPWHLPPM	8	Unmodified	_TPWHLPPM_					0	0	0		AREL1|p.I514Tfs*3|1|0.07|ENSG00000119682|chr14:74670819-74670829|TGCTTTGCAGA/-|frameshift_variant;ENST00000469797.5_1_14:75137455-75152321:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	AREL1|p.I514Tfs*3|1|0.07|ENSG00000119682|chr14:74670819-74670829|TGCTTTGCAGA/-|frameshift_variant	AREL1|p.I514Tfs*3|1|0.07|ENSG00000119682|chr14:74670819-74670829|TGCTTTGCAGA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.2635803222656	2	489.746931	977.479308	-0.042191	-2.0663E-05	2.2683	0.0011109	2.2261	0.0010902	489.74600905908477	27.981	0.81014	27.829	27.19	28	-0.15195					22	19	2	0	0	0	0.027866	1	1579	1579		9.4706	0	1	82672			80647	113	56204	56298	89523	89523					-0.010332362834560627
TPWPWVAL	8	Unmodified	_TPWPWVAL_					0	0	0			REV__ENST00000398117.1_1_18:60794470-60795067:-|nuORF	REV__ENST00000398117.1_1_18:60794470-60795067:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.3088073730469	2	485.263271	968.511988	-0.051858	-2.5165E-05	-4.2938	-0.0020836	-4.3457	-0.0021088	485.2610125881018	63.889	0.81606	63.697	63.418	64.234	-0.19243					45	20	3	0	0	0	0.027866	1	7285	7285		25.45	0	1	1032800	+		80648	31796	56205	56299	89524	89524					0.026472941110455395
TPWQPPTVL	9	Unmodified	_TPWQPPTVL_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.785888671875	2	519.784567	1037.55458	0.69291	0.00036016	-1.0358	-0.00053837	-0.34285	-0.00017821	519.783910456929	78.243	1.0313	78.051	77.643	78.674	-0.19211					76	24	4	0	0	0	0.45795	1	9652	9652		62.107	17.576	1	4071600			80649	5651	56206	56300	89525	89525					0.037306444486148393
TPWQPPTVL	9	Unmodified	_TPWQPPTVL_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7855834960938	2	519.784567	1037.55458	-0.68212	-0.00035455	0.49153	0.00025549	-0.19058	-9.9061E-05	519.7847314319765	78.115	0.95178	78.13	77.739	78.69	0.015907					76	22	5	0	0	0	0.42604	1	9593	9593		64.207	0	1	4017700			80650	5651	56206	56300	89526	89526					0.037306444486148393
TPWSPAAGP	9	Unmodified	_TPWSPAAGP_					0	0	0		ENST00000593416.1_3:149689098-149689314:+|nuORF	ENST00000593416.1_3:149689098-149689314:+|nuORF	ENST00000593416.1_3:149689098-149689314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.76708984375	2	442.21906	882.423567	-0.27672	-0.00012237	-3.6889	-0.0016313	-3.9657	-0.0017537	442.21717491840144	26.102	0.87897	26.102	25.779	26.658	0					51	20	3	0	0	0	0.024412	1	1292	1292		40.573	14.999	1	1379900			80651	17390	56207	56301	89527	89527					-0.022347461994286277
TPYFMAIN	8	Unmodified	_TPYFMAIN_					0	0	0			REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF	REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77203369140625	2	478.730946	955.447339	-0.26095	-0.00012493	-3.2513	-0.0015565	-3.5123	-0.0016814	478.7292198253839	35.747	1.1393	35.747	35.056	36.195	0					43	30	2	0	0	0	0.027866	1	2839	2839		30.504	0	1	126750	+		80652	32234	56208	56302	89528	89528					-0.03216648757256735
TPYSHSPRT	9	Unmodified	_TPYSHSPRT_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2579345703125	2	523.256705	1044.49886	-0.52984	-0.00027724	1.3309	0.0006964	0.80105	0.00041916	523.2573682011821	22.883	1.5005	22.822	21.807	23.308	-0.06086					102	32	5	0	0	0	0.77768	1	813	813		40.778	1.5253	1	2616500			80653	8972	56209	56303	89529	89529					-0.021611887390008633
TQAAFQRAEE	10	Unmodified	_TQAAFQRAEE_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.7845458984375	2	575.778002	1149.54145	-0.20354	-0.0001172	-3.2979	-0.0018989	-3.5014	-0.0020161	575.776205174278	60.98	0.19135	60.774	60.658	60.849	-0.20599					7	4	2	0	0	0	0.03519	1	6793	6793		27.047	11.714	1	85262	+		80654	24316	56210	56304	89530	89530					-0.027338384014456096
TQAATIHL	8	Unmodified	_TQAATIHL_					0	0	0			REV__nc|ENSG00000211809|A0A087WT01|TRAV27	REV__nc|ENSG00000211809|A0A087WT01|TRAV27	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.739990234375	2	427.74016	853.465767	0.70193	0.00030024	-0.42337	-0.00018109	0.27856	0.00011915	427.73992970717404	22.355	1.4006	22.166	21.58	22.98	-0.18894					67	29	5	0	0	0	0.93274	1	774	774		47.916	0	1	1641700	+		80655	37112	56211	56305	89531	89531					0.03317229208948902
TQAATIHL	8	Unmodified	_TQAATIHL_					0	0	0			REV__nc|ENSG00000211809|A0A087WT01|TRAV27	REV__nc|ENSG00000211809|A0A087WT01|TRAV27	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.74041748046875	2	427.74016	853.465767	0.64772	0.00027705	-0.39588	-0.00016933	0.25184	0.00010772	427.73991521063635	22.464	1.2131	22.262	21.855	23.069	-0.20199					52	25	3	0	0	0	0.81662	1	750	750		57.811	3.0466	1	1955600	+		80656	37112	56211	56305	89532	89532					0.03317229208948902
TQADALAPII	10	Unmodified	_TQADALAPII_					0	0	0			REV__ENSG00000009335|ENST00000348165|UBE3C;REV__UBE3C-PTPRN2|1|fusion	REV__UBE3C-PTPRN2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.78857421875	2	506.787307	1011.56006	1.5653	0.00079326	2.9341	0.001487	4.4994	0.0022802	506.7887575915182	16.334	0.25115	16.181	16.068	16.319	-0.15376					16	9	2	0	0	0	1.1267	1	67	67		29.15	3.5755	1	52303	+		80657	37751;19891	56212	56306	89533	89533					0.05474323240423473
TQAEVVQPQQA	11	Unmodified	_TQAEVVQPQQA_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400-SFSWAP|1|fusion	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.2072448730469	3	400.206932	1197.59897	0.85121	0.00034066	-0.27117	-0.00010852	0.58004	0.00023214	400.2067293729772	23.997	0.90838	23.781	23.51	24.418	-0.2151					64	20	5	0	0	0	1.0429	1	1014	1014		24.276	0	1	974330	+		80658	27576;35996	56213	56307	89534	89534					0.00807003804152373
TQAGLLEH	8	Unmodified	_TQAGLLEH_					0	0	0		nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.78009033203125	2	434.729792	867.445031	-0.6553	-0.00028488	0.86867	0.00037764	0.21338	9.2761E-05	434.73004068545094	37.612	0.49398	37.548	37.268	37.762	-0.063389					32	13	3	0	0	0	0.027866	1	3101	3101		31.955	5.2619	1	1270700			80659	1939	56214	56308	89535	89535					0.006006388292803422
TQAIAIKQTP	10	Unmodified	_TQAIAIKQTP_					0	0	0		ADAMDEC1|p.G67Afs*14|1|0.24|ENSG00000134028|chr8:24392372-24392372|G/-|frameshift_variant;ENSG00000134028|ENST00000256412|ADAMDEC1	ADAMDEC1|p.G67Afs*14|1|0.24|ENSG00000134028|chr8:24392372-24392372|G/-|frameshift_variant	ADAMDEC1|p.G67Afs*14|1|0.24|ENSG00000134028|chr8:24392372-24392372|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.294189453125	2	535.813856	1069.61316	-0.48234	-0.00025845	1.2654	0.00067801	0.78304	0.00041957	536.3151063876379	75.057	1.4933	74.793	74.098	75.591	-0.26326					68	33	4	0	0	0	0.03519	1	8845	8845		44.377	0	1	325920			80660	24	56215	56309	89536	89536					0.08113701023103204
TQAISIHNQ	9	Unmodified	_TQAISIHNQ_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9;ENST00000469134.1_1_1:52761607-52800448:+|nuORF	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32379150390625	2	506.26453	1010.51451	-0.047746	-2.4172E-05	-4.418	-0.0022367	-4.4658	-0.0022609	506.7639278068048	78.908	0.49908	78.927	78.651	79.15	0.018677					20	11	2	0	0	0	0.024261	1	9712	9712		45.972	1.5951	1	71077			80661	6572	56216	56310	89537	89537					0.009670977780501744
TQAKPIYGGW	10	Unmodified	_TQAKPIYGGW_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.P353Qfs*30|1|0.47|ENSG00000133030|chr17:17143572-17143572|C/-|frameshift_variant;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP;ENST00000395807.2_1_17:16946162-17000093:+|nuORF	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3170776367188	2	560.792924	1119.57129	-0.42974	-0.000241	-0.26052	-0.0001461	-0.69026	-0.00038709	560.7927162619517	47.935	0.39426	47.659	47.457	47.851	-0.27598					14	10	2	0	0	0	0.03519	1	4685	4685		42.396	0	1	150600			80662	4672	56217	56311	89538	89538					0.016291453345957052
TQALSRSP	8	Unmodified	_TQALSRSP_					0	0	0		ENST00000296666.12_1_5:126853314-126859162:+|nuORF	ENST00000296666.12_1_5:126853314-126859162:+|nuORF	ENST00000296666.12_1_5:126853314-126859162:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.27642822265625	2	430.235242	858.45593	-0.39719	-0.00017088	3.0595	0.0013163	2.6623	0.0011454	430.23782686096075	43.34	0.1805	43.114	42.989	43.17	-0.22597					6	4	2	0	0	0	0.027866	1	3948	3948		49.442	12.282	1	28381			80663	11846	56218	56312	89539	89539					0.02104041203574525
TQAMEEQLVST	11	Unmodified	_TQAMEEQLVST_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MSMS	OPSCC_39_ClassI_Rep-2	2	412.8653259277344	3	412.864066	1235.57037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.534	1	19.415	18.915	19.915	-0.11872								0	0	0	1.1423	1	413	413		34.087	2.4522	1				80664	9326	56219	56313	89540	89540					-0.0379948188731305
TQAQRPQDA	9	Unmodified	_TQAQRPQDA_					0	0	0		sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	sp|P03186|LTP_EBVB9LargetegumentproteindeneddylaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BPLF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.29266357421875	2	507.751787	1013.48902	-0.62449	-0.00031708	-1.0351	-0.00052558	-1.6596	-0.00084266	507.7496000817724	74.324	0.2588	74.333	74.138	74.397	0.0096512					7	5	2	0	0	0	0.024261	1	9005	9005		45.972	3.108	1	45157			80665	37919	56220	56314	89541	89541					-0.017183767443839315
TQAQVLLG	8	Unmodified	_TQAQVLLG_					0	0	0		ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	ENSG00000115504|ENST00000431489|EHBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.21221923828125	2	415.242535	828.470518	0.1499	6.2244E-05	0.7324	0.00030412	0.8823	0.00036637	415.2428452178197	27.626	0.48918	27.626	27.435	27.924	0					20	12	2	0	0	0	0.027866	1	1563	1563		33.516	0	1	77915			80666	3455	56221	56315	89542	89542					0.04942113351728494
TQAYQGLGIGA	11	Unmodified	_TQAYQGLGIGA_					0	0	0		ENSG00000184788|ENST00000644105|SATL1	ENSG00000184788|ENST00000644105|SATL1	ENSG00000184788|ENST00000644105|SATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7635498046875	2	539.780013	1077.54547	-0.98277	-0.00053048	3.5368	0.0019091	2.554	0.0013786	539.7815899518597	31.676	0.40311	31.676	31.386	31.789	0					12	9	2	0	0	0	0.02479	1	2136	2136		42.864	0	1	58271			80667	9368	56222	56316	89543	89543					0.009802510922781948
TQAYQGLGIGA	11	Unmodified	_TQAYQGLGIGA_					0	0	0		ENSG00000184788|ENST00000644105|SATL1	ENSG00000184788|ENST00000644105|SATL1	ENSG00000184788|ENST00000644105|SATL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7636108398438	2	539.780013	1077.54547	-0.98367	-0.00053097	-2.2642	-0.0012221	-3.2478	-0.0017531	540.2785012618344	31.384	0.1605	31.453	31.366	31.527	0.06896					5	3	2	0	0	0	0.024795	1	2033	2033		42.864	0	1	28976			80668	9368	56222	56316	89544	89544					0.009802510922781948
TQCMSTLLI	9	Unmodified	_TQCMSTLLI_					0	0	0			REV__FBXO40|p.P687T|1|0.2|ENSG00000163833|chr3:121626839-121626839|C/A|missense_variant	REV__FBXO40|p.P687T|1|0.2|ENSG00000163833|chr3:121626839-121626839|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.24542236328125	2	505.256471	1008.49839	-0.16088	-8.1284E-05	3.8621	0.0019514	3.7013	0.0018701	505.25663033197867	33.313	0.5218	33.082	32.876	33.397	-0.23107					18	12	2	0	0	0	0.024506	1	2335	2335		23.042	8.1776	1	62841	+		80669	36028	56223	56317	89545	89545					-0.005520677747085756
TQCMSTLLI	9	Unmodified	_TQCMSTLLI_					0	0	0			REV__FBXO40|p.P687T|1|0.2|ENSG00000163833|chr3:121626839-121626839|C/A|missense_variant	REV__FBXO40|p.P687T|1|0.2|ENSG00000163833|chr3:121626839-121626839|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	505.256471	1008.49839	-1.0861	-0.00054877	6.0686	0.0030662	4.9824	0.0025174	505.25713614026273	33.362	0.44352	33.196	32.918	33.362	-0.16565	0.039575	0.0011329	NaN	16.473	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104770	+		80670	36028	56223	56317							-0.005520677747085756
TQCTPRHR	8	Unmodified	_TQCTPRHR_					0	0	0			REV__DNMBP|p.E671Q|1|0.24|ENSG00000107554|chr10:99955463-99955463|C/G|missense_variant	REV__DNMBP|p.E671Q|1|0.24|ENSG00000107554|chr10:99955463-99955463|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7666931152344	2	499.751067	997.487581	0.031136	1.556E-05	0.35756	0.00017869	0.3887	0.00019425	499.7514574323801	41.92	0.14058	41.946	41.821	41.961	0.026012					5	3	2	0	0	0	0.027866	1	3744	3744		35.618	11.416	1	150740	+		80671	19698	56224	56318	89546	89546					-0.011262893141292807
TQCTQKMIM	9	Unmodified	_TQCTQKMIM_					0	0	0			REV__ENST00000530104.2_1_11:111951254-111951290:+|nuORF	REV__ENST00000530104.2_1_11:111951254-111951290:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.2958374023438	2	542.253405	1082.49226	1.7237	0.00093469	-4.296	-0.0023295	-2.5723	-0.0013948	542.2507128573022	18.528	0.24321	18.528	18.431	18.674	0					6	4	2	0	0	0	0.024527	1	314	314		24.519	0	1	9849.6	+		80672	31630	56225	56319	89547	89547					-0.045689092778957274
TQCTQKMIM	9	Carbamidomethyl (C),2 Oxidation (M)	_TQC(Carbamidomethyl (C))TQKM(Oxidation (M))IM(Oxidation (M))_	TQC(1)TQKMIM	TQCTQKM(1)IM(1)	TQC(41)TQKMIM	TQCTQKM(41)IM(41)	0	1	2			REV__ENST00000530104.2_1_11:111951254-111951290:+|nuORF	REV__ENST00000530104.2_1_11:111951254-111951290:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.8412475585938	2	586.759052	1171.50355	-0.64384	-0.00037778	0.67898	0.0003984	0.03514	2.0618E-05	586.759418509267	53.201	1.8375	52.943	51.806	53.643	-0.25838					85	48	2	0	0	0	0.024447	1	5573	5573		40.778	19.831	1	546820	+		80673	31630	56225	56320	89548	89548	418	881;882			-0.07534131974421143
TQDAIPALLL	10	Unmodified	_TQDAIPALLL_					0	0	0		ENST00000373675.3_1_10:69902776-69902869:+|nuORF	ENST00000373675.3_1_10:69902776-69902869:+|nuORF	ENST00000373675.3_1_10:69902776-69902869:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7710571289062	2	527.810782	1053.60701	-1.2232	-0.0006456	0.37821	0.00019962	-0.84496	-0.00044598	527.8109611490419	53.863	0.65868	53.727	53.428	54.087	-0.13617					34	20	2	0	0	0	0.03519	1	5690	5690		26.693	6.6961	1	692630			80674	13085	56226	56321	89549	89549					0.08235182791554507
TQDASLKNKL	10	Unmodified	_TQDASLKNKL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.333984375	2	559.31422	1116.61389	0.57975	0.00032426	-2.026	-0.0011332	-1.4463	-0.00080892	559.3127948680406	51.531	0.14812	51.413	51.319	51.468	-0.11875					5	3	2	0	0	0	0.03519	1	5302	5302		30.318	3.6248	1	472910			80675	5785	56227	56322	89550	89550					0.06024495672136254
TQDFSKLLSS	10	Unmodified	_TQDFSKLLSS_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	563.3220825195312	2	563.292953	1124.57135	-0.59935	-0.00033761	-3.9054	-0.0021999	-4.5047	-0.0025375	563.2903617808414	34.027	0.59361	34.027	33.739	34.332	0					17	14	2	0	0	0	0.03519	1	2481	2481		12.207	1.1099	1	91725			80676	2057	56228	56323	89551	89551					0.01405100543934168
TQDIARLR	8	Unmodified	_TQDIARLR_					0	0	0		nc|ENSG00000183798|Q9NT22-2|EMILIN3;ENSG00000183798|ENST00000332312|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	nc|ENSG00000183798|Q9NT22-2|EMILIN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7843933105469	2	486.78289	971.551228	0.40757	0.0001984	2.1191	0.0010315	2.5266	0.0012299	486.78386793825655	100.84	2.6156	100.7	100.13	102.74	-0.13364					201	64	5	0	0	0	0.99042	1	12664	12664		38.806	1.647	1	13798000			80677	9277	56229	56324	89552	89552					0.06431394394621748
TQDISEIGKL	10	Unmodified	_TQDISEIGKL_					0	0	0			REV__nc|ENSG00000042062|Q96MK2|RIPOR3	REV__nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.253173828125	2	552.300778	1102.587	-1.1861	-0.00065509	1.5253	0.00084242	0.33917	0.00018733	552.3015615298802	45.947	0.10354	45.795	45.719	45.823	-0.15157					4	2	2	0	0	0	0.03519	1	4484	4484		25.574	0	1	57901	+		80678	20098	56230	56325	89553	89553					0.03981387060957786
TQDRQVAGSP	10	Unmodified	_TQDRQVAGSP_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7628173828125	2	529.764894	1057.51524	-1.0662	-0.00056485	-2.3012	-0.0012191	-3.3674	-0.001784	529.763499817561	83.061	0.81539	83.061	82.535	83.351	0					36	15	3	0	0	0	0.78438	1	10385	10385		61.691	2.9093	1	673080	+		80679	21256	56231	56326	89554	89554					-0.011221075729054064
TQEAAESRPSP	11	Unmodified	_TQEAAESRPSP_					0	0	0			REV__ENST00000392783.6_3_2:160472966-160473122:-|nuORF	REV__ENST00000392783.6_3_2:160472966-160473122:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.2310180664062	2	586.780741	1171.54693	-1.2912	-0.00075765	3.4956	0.0020511	2.2044	0.0012935	586.7824096300284	49.052	0.36254	48.773	48.611	48.973	-0.27977					14	9	2	0	0	0	0.02406	1	4909	4909		68.626	23.604	1	102150	+		80680	31621	56232	56327	89555	89555					-0.03198159609632967
TQEAQILLRTD	11	Unmodified	_TQEAQILLRTD_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	429.90228271484375	3	429.90162	1286.68303	0.34453	0.00014811	1.2903	0.00055468	1.6348	0.00070279	429.9020722897637	110.42	0.83455	110.43	110.12	110.96	0.0066528					70	24	4	0	0	0	1.0557	1	13893	13893		26.75	11.412	1	652700	+		80681	24922	56233	56328	89556	89556					0.05115534901051433
TQEGLKAVP	9	Unmodified	_TQEGLKAVP_					0	0	0		nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.761474609375	2	471.766374	941.518196	0.33889	0.00015988	4.4888	0.0021177	4.8277	0.0022776	471.76833258073486	32.485	0.60267	32.548	32.125	32.728	0.062889					21	15	2	0	0	0	0.024294	1	2182	2182		37.159	2.9866	1	391880			80682	18779	56234	56329	89557	89557					0.045097675518945834
TQELLVKASE	10	Unmodified	_TQELLVKASE_					0	0	0			REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF	REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.334228515625	2	559.308603	1116.60265	-1.1779	-0.00065879	-0.38247	-0.00021392	-1.5603	-0.00087271	559.308548593126	51.753	0.46048	51.484	51.123	51.584	-0.26903					15	11	2	0	0	0	0.03519	1	5331	5331		60.118	16.001	1	361610	+		80683	33469	56235	56330	89558	89558					0.04901673578001464
TQEMLENDLL	10	Unmodified	_TQEMLENDLL_					0	0	0		nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30;nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.92437744140625	3	402.528794	1204.56455	0.21024	8.4629E-05	-2.5622	-0.0010314	-2.3519	-0.00094672	402.52730000214655	41.047	0.86984	40.912	40.345	41.215	-0.13553					47	22	3	0	0	0	0.03519	1	3542	3542		25.126	14.029	1	178710			80684	3120	56236	56331	89559	89559					-0.029545803989776687
TQEMLENDLL	10	Unmodified	_TQEMLENDLL_					0	0	0		nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30;nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	402.528794	1204.56455	0.75536	0.00030405	-4.3232	-0.0017402	-3.5678	-0.0014362	402.52683854615776	41.202	1.0588	40.975	40.256	41.315	-0.2278	0.0051847	-0.00096067	NaN	19.263	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159500			80685	3120	56236	56331							-0.029545803989776687
TQEMLENDLL	10	Unmodified	_TQEMLENDLL_					0	0	0		nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;nc|ENSG00000288591|Q9Y2I9-4|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30;nc|ENSG00000288591|Q9Y2I9|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	402.528794	1204.56455	-1.159	-0.00046653	-1.2138	-0.0004886	-2.3728	-0.00095513	402.5276806631722	41.252	0.97987	41.022	40.414	41.394	-0.23029	0.052437	0.0027942	NaN	19.263	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193820			80686	3120	56236	56331							-0.029545803989776687
TQEPRAKKGQ	10	Unmodified	_TQEPRAKKGQ_					0	0	0		ZMYND11|p.R399Q|1|0.24|ENSG00000015171|chr10:247435-247435|G/A|missense_variant	ZMYND11|p.R399Q|1|0.24|ENSG00000015171|chr10:247435-247435|G/A|missense_variant	ZMYND11|p.R399Q|1|0.24|ENSG00000015171|chr10:247435-247435|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2877807617188	2	571.817461	1141.62037	-0.084563	-4.8355E-05	2.5941	0.0014833	2.5095	0.001435	571.8187867789741	65.853	0.9022	65.612	65.085	65.988	-0.24145					43	21	3	0	0	0	0.03519	1	7465	7465		30.318	0	1	593540			80687	38179	56237	56332	89560	89560					0.05522433623514189
TQESIITLP	9	Unmodified	_TQESIITLP_					0	0	0		nc|ENSG00000119535|Q99062-2|CSF3R;nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R	nc|ENSG00000119535|Q99062-2|CSF3R	nc|ENSG00000119535|Q99062-2|CSF3R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8005676269531	2	501.279315	1000.54408	-0.53153	-0.00026644	1.7535	0.00087899	1.222	0.00061255	501.28021563913825	47.116	0.69415	47.175	46.729	47.423	0.059097					40	18	3	0	0	0	0.0242	1	4589	4589		60.118	12.461	1	400230			80688	3744	56238	56333	89561	89561					0.04382617003534506
TQETYQDYSK	10	Unmodified	_TQETYQDYSK_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5232238769531	3	421.522697	1261.54626	0.4643	0.00019571	-1.0222	-0.00043089	-0.55793	-0.00023518	421.52227539195707	19.303	0.24869	19.142	18.984	19.233	-0.16079					7	4	2	0	0	0	0.03519	1	401	401		17.167	0	1	35099	+		80689	36535	56239	56334	89562	89562					-0.07404999049322214
TQEVEKLN	8	Unmodified	_TQEVEKLN_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.8001403808594	2	480.753464	959.492375	0.023063	1.1088E-05	1.2652	0.00060824	1.2882	0.00061933	480.75387017520586	27.436	0.45998	27.28	27.061	27.521	-0.15664					15	10	2	0	0	0	0.027866	1	1468	1468		84.916	2.675	1	135280			80690	9513	56240	56335	89563	89563					0.011008733096105061
TQEVVIPIL	9	Unmodified	_TQEVVIPIL_					0	0	0			REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	REV__ENST00000594780.1_1_19:6361708-6364854:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.3082275390625	2	506.307875	1010.6012	0.49317	0.0002497	-0.48693	-0.00024654	0.0062378	3.1582E-06	506.30748460904033	83.987	1.1091	83.818	83.369	84.478	-0.16916					59	25	4	0	0	0	0.74711	1	10155	10155		42.864	2.0861	1	1437800	+		80691	22831	56241	56336	89564	89564					0.09632084279917308
TQFDFVEL	8	Unmodified	_TQFDFVEL_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7884216308594	2	499.745108	997.475663	0.18505	9.248E-05	3.8691	0.0019336	4.0542	0.002026	499.7471902308923	71.303	0.34715	71.314	71.162	71.509	0.010735					12	8	2	0	0	0	0.027866	1	8541	8541		27.882	0	1	46925			80692	6073	56242	56337	89565	89565					-0.023176275763375997
TQFRGHGF	8	Unmodified	_TQFRGHGF_					0	0	0			REV__ENST00000473638.5_1_22:39708982-39709710:-|nuORF	REV__ENST00000473638.5_1_22:39708982-39709710:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7503662109375	2	475.235576	948.456599	-0.0067446	-3.2053E-06	-0.31839	-0.00015131	-0.32514	-0.00015452	475.23670022677584	28.425	0.21286	28.421	28.286	28.499	-0.0042019					6	4	2	0	0	0	0.027866	1	1631	1631		4.3163	0	1	11990	+		80693	33242	56243	56338	89566	89566					-0.019691193567155096
TQFSGFRR	8	Unmodified	_TQFSGFRR_					0	0	0			REV__ENST00000302472.3_1_5:40680399-40680531:+|nuORF	REV__ENST00000302472.3_1_5:40680399-40680531:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2950439453125	2	499.761958	997.509363	0.28895	0.0001444	2.7555	0.0013771	3.0444	0.0015215	499.7632661618806	25.777	0.42537	25.857	25.664	26.09	0.08009					18	9	2	0	0	0	0.027866	1	1232	1232		10.866	0	1	186830	+		80694	30077	56244	56339	89567	89567					0.010508387061008762
TQFTSHLQT	9	Unmodified	_TQFTSHLQT_					0	0	0			REV__nc|ENSG00000126583|P05129-2|PRKCG	REV__nc|ENSG00000126583|P05129-2|PRKCG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7927856445312	2	531.764363	1061.51417	-0.63092	-0.0003355	-1.8957	-0.0010081	-2.5266	-0.0013436	531.7647985473441	24.735	0.2621	24.56	24.425	24.688	-0.17484					8	5	2	0	0	0	0.024367	1	1092	1092		52.937	12.159	1	27068	+		80695	22905	56245	56340	89568	89568					-0.01412321941825212
TQFYPINNK	9	Unmodified	_TQFYPINNK_					0	0	0			REV__RAB7A|p.E153Q|1|0.07|ENSG00000075785|chr3:128807600-128807600|G/C|missense_variant	REV__RAB7A|p.E153Q|1|0.07|ENSG00000075785|chr3:128807600-128807600|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2977905273438	2	562.790381	1123.56621	0.49965	0.0002812	0.87531	0.00049261	1.375	0.00077381	562.7908380769433	58.604	0.93525	58.362	58.001	58.936	-0.24165					43	22	4	0	0	0	0.023837	1	6423	6423		54.776	1.6874	1	1920100	+		80696	37422	56246	56341	89569	89569					0.009368414719119755
TQFYPINNK	9	Unmodified	_TQFYPINNK_					0	0	0			REV__RAB7A|p.E153Q|1|0.07|ENSG00000075785|chr3:128807600-128807600|G/C|missense_variant	REV__RAB7A|p.E153Q|1|0.07|ENSG00000075785|chr3:128807600-128807600|G/C|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	562.790381	1123.56621	0.096532	5.4327E-05	1.4661	0.00082513	1.5627	0.00087946	562.7911114958123	58.523	0.39997	58.342	58.187	58.587	-0.18134	-0.033761	0.00028942	NaN	54.776	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1561600	+		80697	37422	56246	56341							0.009368414719119755
TQGPRLSPIL	10	Unmodified	_TQGPRLSPIL_					0	0	0		ENST00000481948.1_1_16:88104968-88110264:+|nuORF	ENST00000481948.1_1_16:88104968-88110264:+|nuORF	ENST00000481948.1_1_16:88104968-88110264:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.282470703125	2	541.321848	1080.62914	-0.97939	-0.00053017	3.1971	0.0017307	2.2177	0.0012005	541.3237974118347	80.623	0.61034	80.623	80.289	80.899	0					30	14	3	0	0	0	0.03519	1	10002	10002		45.972	0	1	295410			80698	15241	56247	56342	89570	89570					0.09205407259992171
TQGRDPTQ	8	Unmodified	_TQGRDPTQ_					0	0	0		ENST00000567736.5_1_16:89365554-89366736:-|nuORF	ENST00000567736.5_1_16:89365554-89366736:-|nuORF	ENST00000567736.5_1_16:89365554-89366736:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.21734619140625	2	451.719956	901.425358	0.35968	0.00016247	0.51142	0.00023102	0.8711	0.00039349	451.71891972593744	25.012	0.81764	25.091	24.64	25.458	0.079184					24	18	2	0	0	0	0.027866	1	1094	1094		47.657	3.5405	1	215680			80699	16967	56248	56343	89571	89571					-0.029297371814664075
TQGSLLTK	8	Unmodified	_TQGSLLTK_					0	0	0			REV__ENST00000303657.9_1_19:5993631-5994159:-|nuORF	REV__ENST00000303657.9_1_19:5993631-5994159:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.2582702636719	2	424.247818	846.481082	-0.5358	-0.00022731	-0.29639	-0.00012574	-0.83219	-0.00035305	424.24743708314753	26.945	0.62004	26.932	26.621	27.241	-0.012983					22	15	2	0	0	0	0.027866	1	1450	1450		45.972	0	1	167970	+		80700	30098	56249	56344	89572	89572					0.05170096006145286
TQGSRKEAL	9	Unmodified	_TQGSRKEAL_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2966613769531	2	495.272355	988.530158	0.17551	8.6927E-05	-3.2536	-0.0016114	-3.0781	-0.0015245	495.270703453054	54.177	0.47697	53.98	53.889	54.366	-0.19739					14	12	2	0	0	0	0.024495	1	5787	5787		26.693	11.051	1	208870	+		80701	24733	56250	56345	89573	89573					0.0354338429509653
TQGWIGIPTP	10	Unmodified	_TQGWIGIPTP_					0	0	0		ENST00000492581.5_1_22:21065434-21067334:-|nuORF;ENST00000463608.5_1_22:21830433-21838406:-|nuORF	ENST00000492581.5_1_22:21065434-21067334:-|nuORF	ENST00000492581.5_1_22:21065434-21067334:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.23828125	2	535.287474	1068.5604	-2.4161	-0.0012933	1.546	0.00082754	-0.87017	-0.00046579	535.2878734855774	60.306	0.75074	60.385	60.088	60.839	0.078888					27	19	2	0	0	0	0.03519	1	6872	6872		65.465	0	1	353600			80702	15485	56251	56346	89574	89574					0.028857429602794582
TQHAVGIVV	9	Unmodified	_TQHAVGIVV_					0	0	0		ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2690124511719	2	462.269084	922.523616	-0.16979	-7.8487E-05	0.14911	6.8927E-05	-0.020681	-9.5603E-06	462.2690289586842	45.655	1.3816	45.655	45.278	46.659	0					97	39	4	0	0	0	0.17822	5	4443	4433;4443;4454;4466;4478		93.195	13.744	1	10750000			80703	3908	56252	56347	89575;89576;89577;89578;89579	89576					0.0592549113438281
TQHAVGIVV	9	Unmodified	_TQHAVGIVV_					0	0	0		ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.2695007324219	2	462.269084	922.523616	-0.59127	-0.00027332	0.56316	0.00026033	-0.028103	-1.2991E-05	462.26922220859456	45.777	1.4558	45.625	45.244	46.7	-0.15157					91	41	4	0	0	0	0.17822	3	4466	4431;4454;4466		93.195	18.91	1	11311000			80704	3908	56252	56347	89580;89581;89582	89582					0.0592549113438281
TQHAVGIVV	9	Unmodified	_TQHAVGIVV_					0	0	0		ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.26959228515625	2	462.269084	922.523616	0.35503	0.00016412	-0.31448	-0.00014538	0.040544	1.8742E-05	462.26882101083237	45.6	1.2925	45.644	45.279	46.572	0.04388					98	37	4	0	0	0	0.28753	2	4379	4379;4417		77.318	7.9873	1	10810000			80705	3908	56252	56347	89583;89584	89583					0.0592549113438281
TQHAVGIVV	9	Unmodified	_TQHAVGIVV_					0	0	0		ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENSG00000122026|ENST00000311549|RPL21;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	ENST00000493466.1_1_4:37823021-37823243:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.269084	922.523616	-0.19527	-9.0267E-05	0.0079104	3.6567E-06	-0.18736	-8.6611E-05	462.268753481963	45.873	0.52841	45.612	45.249	45.777	-0.26118	-0.021763	-0.00020076	NaN	93.195	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195570			80706	3908	56252	56347							0.0592549113438281
TQHKGNLT	8	Unmodified	_TQHKGNLT_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7455749511719	2	449.740691	897.466829	-0.18795	-8.4529E-05	-2.8683	-0.00129	-3.0563	-0.0013745	449.73931188525916	46.741	0.59192	46.792	46.544	47.136	0.051399					26	15	2	0	0	0	0.027866	1	4628	4628		16.473	0	1	285870	+		80707	20729	56253	56348	89585	89585					0.013994435778499792
TQHKGNLT	8	Unmodified	_TQHKGNLT_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.740691	897.466829	0.30872	0.00013884	-3.7564	-0.0016894	-3.4477	-0.0015506	449.739087390392	46.88	0.48905	46.88	46.587	47.076	0	0.043933	-0.00043015	NaN	10.866	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239530	+		80708	20729	56253	56348							0.013994435778499792
TQHPTPGP	8	Unmodified	_TQHPTPGP_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.7081298828125	2	417.70886	833.403166	1.0537	0.00044014	-0.92999	-0.00038846	0.12371	5.1675E-05	417.7080221269448	99.009	0.94334	98.884	98.328	99.272	-0.12459					41	23	3	0	0	0	1.0338	1	12267	12267		31.955	6.5047	1	140550			80709	4197	56254	56349	89586	89586					-0.020199168592398564
TQHQRGSHH	9	Unmodified	_TQHQRGSHH_					0	0	0		ENST00000500728.2_1_4:3514388-3514475:-|nuORF	ENST00000500728.2_1_4:3514388-3514475:-|nuORF	ENST00000500728.2_1_4:3514388-3514475:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.3212890625	2	544.260645	1086.50674	-0.3463	-0.00018848	1.2759	0.00069442	0.9296	0.00050594	544.7632066319619	24.365	0.1627	24.191	24.089	24.252	-0.17484					6	3	2	0	0	0	0.024506	1	1043	1043		16.473	9.7376	1	50550			80710	15647	56255	56350	89587	89587					-0.033056166988671976
TQHRKSTPS	9	Unmodified	_TQHRKSTPS_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.3399658203125	2	521.275429	1040.53631	-0.89256	-0.00046527	-0.95138	-0.00049593	-1.8439	-0.0009612	521.2750619616666	22.876	0.32092	22.95	22.791	23.112	0.073956					15	6	3	0	0	0	0.024405	1	812	812		20.947	6.0821	1	34230			80711	15514	56256	56351	89588	89588					0.0176590252663118
TQHRKSTPS	9	Unmodified	_TQHRKSTPS_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.275429	1040.53631	1.4767	0.00076975	4.841	0.0025235	6.3177	0.0032933	521.2779767461742	23.145	0.27652	22.954	22.758	23.034	-0.19117	-0.013674	0.0046189	NaN	20.947	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43192			80712	15514	56256	56351							0.0176590252663118
TQHSHVDEN	9	Unmodified	_TQHSHVDEN_					0	0	0		ENST00000417079.5_1_13:30938261-30939654:-|nuORF	ENST00000417079.5_1_13:30938261-30939654:-|nuORF	ENST00000417079.5_1_13:30938261-30939654:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7571411132812	2	533.731052	1065.44755	0.19242	0.0001027	-0.23551	-0.0001257	-0.043086	-2.2996E-05	534.2329321077584	59.238	0.20119	58.996	58.895	59.096	-0.24165					6	4	2	0	0	0	0.024541	1	6519	6519		18.262	5.4504	1	115540			80713	13911	56257	56352	89589	89589					-0.08255557503707678
TQHSHVDEN	9	Unmodified	_TQHSHVDEN_					0	0	0		ENST00000417079.5_1_13:30938261-30939654:-|nuORF	ENST00000417079.5_1_13:30938261-30939654:-|nuORF	ENST00000417079.5_1_13:30938261-30939654:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.731052	1065.44755	0.10811	5.7701E-05	-0.20939	-0.00011176	-0.10128	-5.4055E-05	533.7307187613593	58.849	0.35614	58.849	58.643	58.999	0	-0.052421	0.00060393	NaN	12.812	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121390			80714	13911	56257	56352							-0.08255557503707678
TQHSHVDEN	9	Unmodified	_TQHSHVDEN_					0	0	0		ENST00000417079.5_1_13:30938261-30939654:-|nuORF	ENST00000417079.5_1_13:30938261-30939654:-|nuORF	ENST00000417079.5_1_13:30938261-30939654:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.731052	1065.44755	0.068931	3.6791E-05	-1.2066	-0.00064401	-1.1377	-0.00060722	533.7303710206476	58.768	0.43589	58.859	58.561	58.997	0.091217	-0.042341	-0.00046057	NaN	12.812	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139480			80715	13911	56257	56352							-0.08255557503707678
TQHVYHKYRRR	11	Unmodified	_TQHVYHKYRRR_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.76318359375	3	515.28328	1542.82801	-0.36341	-0.00018726	-2.4217	-0.0012479	-2.7851	-0.0014351	515.2812398528988	42.653	0.41604	42.427	42.181	42.597	-0.22597					15	10	3	0	0	0	0.024865	1	3807	3807		5.1424	0	1	112000			80716	6475	56258	56353	89590	89590					0.07831060611374596
TQIDSLEDET	10	Unmodified	_TQIDSLEDET_					0	0	0			REV__nc|ENSG00000115252|P54750-3|PDE1A	REV__nc|ENSG00000115252|P54750-3|PDE1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	576.3068237304688	2	575.75914	1149.50373	-0.63218	-0.00036398	-0.37825	-0.00021778	-1.0104	-0.00058176	575.7585593852538	73.097	0.42219	72.906	72.504	72.927	-0.19026					13	9	2	0	0	0	0.03519	1	8520	8520		21.686	11.98	1	74946	+		80717	22181	56259	56354	89591	89591					-0.06504394177568429
TQIIRFYCY	9	Unmodified	_TQIIRFYCY_					0	0	0			REV__ENSG00000168329|ENST00000399220|CX3CR1	REV__ENSG00000168329|ENST00000399220|CX3CR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.18780517578125	3	402.870715	1205.59032	1.154	0.0004649	-0.98304	-0.00039604	0.17094	6.8866E-05	402.8702701430015	36.43	0.42766	36.213	35.981	36.408	-0.21661					20	10	3	0	0	0	0.024293	1	2868	2868		25.574	9.5673	1	106050	+		80718	26248	56260	56355	89592	89592					-0.004256413660414182
TQILRNPW	8	Unmodified	_TQILRNPW_					0	0	0		nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.3021850585938	2	514.287808	1026.56106	0.81158	0.00041738	4.3419	0.002233	5.1535	0.0026504	514.7896327574044	51.418	0.42592	51.306	51.012	51.438	-0.11163					13	10	2	0	0	0	0.027866	1	5281	5281		7.6903	0	1	57073			80719	18718	56261	56356	89593	89593					0.048845823999727145
TQILSESPPI	10	Unmodified	_TQILSESPPI_					0	0	0			REV__ENST00000568631.5_2_16:2317267-2317702:-|nuORF	REV__ENST00000568631.5_2_16:2317267-2317702:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7962036132812	2	542.797872	1083.58119	0.017495	9.496E-06	-0.39301	-0.00021332	-0.37551	-0.00020383	542.7975197223367	105.7	0.89027	105.7	105.36	106.25	0					65	31	3	0	0	0	1.0909	1	13592	13592		33.922	2.3918	1	191290	+		80720	35348	56262	56357	89594	89594					0.042742885492771165
TQIPKGAKV	9	Unmodified	_TQIPKGAKV_					0	0	0			REV__nc|ENSG00000163395|Q86VF2-4|IGFN1	REV__nc|ENSG00000163395|Q86VF2-4|IGFN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2927551269531	2	471.292559	940.570566	-0.11834	-5.5771E-05	0.038407	1.8101E-05	-0.07993	-3.7671E-05	471.29258327038116	50.194	1.2249	50.194	49.805	51.03	0					106	35	4	0	0	0	0.42604	1	5216	5216		64.207	3.2353	1	24213000	+		80721	36851	56263	56358	89595	89595					0.09790350685523208
TQIQDRCQN	9	Unmodified	_TQIQDRCQN_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;FSIP2|p.K6621Ifs*2|1|0.2|ENSG00000188738|chr2:185813566-185813567|-/AGAATATA|frameshift_variant	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.30029296875	2	553.256379	1104.49821	-0.26986	-0.0001493	3.8239	0.0021156	3.5541	0.0019663	553.25834057725	54.215	0.52089	54.067	53.821	54.342	-0.14724					36	14	3	0	0	0	0.024397	1	5902	5902		39.253	2.8061	1	1005100			80722	9743	56264	56359	89596	89596					-0.04986351450361326
TQITKVTD	8	Unmodified	_TQITKVTD_					0	0	0		ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENST00000462032.1_1_1:29424324-29436027:+|nuORF	ENST00000462032.1_1_1:29424324-29436027:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2677307128906	2	453.250557	904.486562	-0.39507	-0.00017906	1.4306	0.00064843	1.0356	0.00046937	453.2509844514205	21.367	0.53578	21.367	21.048	21.584	0					14	10	2	0	0	0	0.027866	1	639	639		37.159	0	1	37840			80723	14696	56265	56360	89597	89597					0.030497747979552514
TQKEVIGMEA	10	Unmodified	_TQKEVIGMEA_					0	0	0		ENSG00000188282|ENST00000697321|RUFY4	ENSG00000188282|ENST00000697321|RUFY4	ENSG00000188282|ENST00000697321|RUFY4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8046875	2	553.281531	1104.54851	-0.77161	-0.00042692	0.10306	5.7024E-05	-0.66854	-0.00036989	553.2814334768536	25.245	0.35067	25.245	25.094	25.445	0					12	8	2	0	0	0	0.03519	1	1200	1200		42.864	7.7122	1	59771			80724	9704	56266	56361	89598	89598					0.0004175815481630707
TQKEVIGMEA	10	Unmodified	_TQKEVIGMEA_					0	0	0		ENSG00000188282|ENST00000697321|RUFY4	ENSG00000188282|ENST00000697321|RUFY4	ENSG00000188282|ENST00000697321|RUFY4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.281531	1104.54851	-1.2594	-0.0006968	1.0747	0.0005946	-0.18472	-0.0001022	553.2820206443332	25.295	0.39936	25.261	24.992	25.392	-0.034397	0.010912	0.001033	NaN	53.089	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57686			80725	9704	56266	56361							0.0004175815481630707
TQKKQLLD	8	Unmodified	_TQKKQLLD_					0	0	0		ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.80303955078125	2	487.287474	972.560395	0.28761	0.00014015	-2.9049	-0.0014155	-2.6172	-0.0012754	487.2875788489494	88.558	0.38486	88.558	88.34	88.725	0					11	8	2	0	0	0	0.027866	1	11172	11172		20.947	0	1	74473			80726	1488	56267	56362	89599	89599					0.0730174296027144
TQKKQYKET	9	Unmodified	_TQKKQYKET_					0	0	0		ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	ENSG00000182197|ENST00000378204|EXT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	578.3055419921875	2	577.31422	1152.61389	0.27168	0.00015684	2.3513	0.0013574	2.623	0.0015143	577.3153601414177	71.973	0.78044	71.684	71.351	72.132	-0.28857					44	20	4	0	0	0	0.024405	1	8667	8667		20.947	0	1	1488600			80727	9112	56268	56363	89600	89600					0.043684956721335766
TQKKRTFKNS	10	Unmodified	_TQKKRTFKNS_					0	0	0			REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|93|2|sense	REV__L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|93|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.7428283691406	3	413.238566	1236.69387	0.4226	0.00017464	-0.51918	-0.00021455	-0.096582	-3.9911E-05	413.2382031457827	37.329	0.40092	37.265	37.014	37.415	-0.063385					15	10	2	0	0	0	0.03519	1	3005	3005		19.263	0	1	74639	+		80728	36229	56269	56364	89601	89601					0.08498982065998462
TQKLFASNAD	10	Unmodified	_TQKLFASNAD_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|12|2|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2825971506431357|0.2447948664736123|3.75|522.0|12|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2590942382812	2	547.77747	1093.54039	-0.47964	-0.00026274	2.2131	0.0012123	1.7334	0.00094954	547.7770911525382	52.371	0.31547	52.187	51.998	52.314	-0.18405					9	7	2	0	0	0	0.03519	1	5443	5443		35.152	7.2698	1	83354	+		80729	36341	56270	56365	89602	89602					-0.0026405277033063612
TQKLNGKP	8	Unmodified	_TQKLNGKP_					0	0	0		chr4:177335822-177336108|497|13.98|0.72|4.28|+|0|NEIL3,NEIL3|2	chr4:177335822-177336108|497|13.98|0.72|4.28|+|0|NEIL3,NEIL3|2	chr4:177335822-177336108|497|13.98|0.72|4.28|+|0|NEIL3,NEIL3|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2713928222656	2	443.261259	884.507966	0.030949	1.3718E-05	0.093108	4.1271E-05	0.12406	5.499E-05	443.2612080585299	47.146	1.0086	47.146	46.551	47.56	0					48	27	2	0	0	0	0.027866	1	4617	4617		26.693	20.772	1	1337700			80730	393	56271	56366	89603	89603					0.061092046173257586
TQKNVVIVSCD	11	Unmodified	_TQKNVVIVSCD_					0	0	0			REV__ENSG00000124160|ENST00000290231|NCOA5	REV__ENSG00000124160|ENST00000290231|NCOA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.8655700683594	3	402.544667	1204.61217	-1.1668	-0.00046968	-3.4087	-0.0013721	-4.5754	-0.0018418	402.5433053656552	43.606	0.94689	43.387	42.88	43.826	-0.21939					36	25	2	0	0	0	0.024738	1	3970	3970		25.068	0.83596	1	633870	+		80731	22739	56272	56367	89604	89604					0.01805118591869359
TQKQKRRG	8	Unmodified	_TQKQKRRG_					0	0	0			REV__ENST00000280154.11_1_10:112631644-112635747:+|nuORF	REV__ENST00000280154.11_1_10:112631644-112635747:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.30487060546875	2	501.301781	1000.58901	-0.76578	-0.00038389	2.6253	0.0013161	1.8596	0.0009322	501.3028946026006	33.009	0.54597	33.016	32.776	33.321	0.0066261					28	14	3	0	0	0	0.027866	1	2309	2309		17.365	0	1	481470	+		80732	29874	56273	56368	89605	89605					0.08873905380085034
TQKRKRNW	8	Unmodified	_TQKRKRNW_					0	0	0		ENST00000513237.5_1_4:106164928-106190806:+|nuORF	ENST00000513237.5_1_4:106164928-106190806:+|nuORF	ENST00000513237.5_1_4:106164928-106190806:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	557.8322143554688	2	558.822881	1115.63121	-0.3785	-0.00021152	0.034121	1.9067E-05	-0.34438	-0.00019245	558.8229493180196	39.733	0.31974	39.509	39.302	39.622	-0.22311					9	7	2	0	0	0	0.027866	1	3347	3347		27.882	0.83493	1	106240			80733	15866	56274	56369	89606	89606					0.07801880788451854
TQKTILLVL	9	Unmodified	_TQKTILLVL_					0	0	0			REV__ENST00000252840.10_1_19:7069531-7069681:+|nuORF	REV__ENST00000252840.10_1_19:7069531-7069681:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.839111328125	2	514.839342	1027.66413	0.223	0.00011481	-0.67473	-0.00034738	-0.45173	-0.00023257	514.8389510212749	57.324	0.95783	57.122	56.819	57.777	-0.20209					74	25	4	0	0	0	0.17822	1	6250	6250		93.195	0.052222	1	13377000	+		80734	29515	56275	56370	89607	89607					0.15140650067951356
TQKTRQRG	8	Unmodified	_TQKTRQRG_					0	0	0		ENSG00000204930|ENST00000423537|FAM221B;nc|ENSG00000204930|A6H8Z2-2|FAM221B	ENSG00000204930|ENST00000423537|FAM221B	ENSG00000204930|ENST00000423537|FAM221B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7669372558594	2	487.778139	973.541725	-0.57184	-0.00027893	3.8622	0.0018839	3.2903	0.0016049	487.7796427359679	28.584	0.41471	28.58	28.374	28.789	-0.0042019					12	9	2	0	0	0	0.027866	1	1647	1647		40.778	5.6261	1	47331			80735	10391	56276	56371	89608	89608					0.053896261090812914
TQKYLLIF	8	Unmodified	_TQKYLLIF_					0	0	0		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8367309570312	2	513.305136	1024.59572	-0.39813	-0.00020436	-2.7877	-0.001431	-3.1859	-0.0016353	513.3031982289938	68.453	0.71988	68.453	68.179	68.898	0					24	18	2	0	0	0	0.027866	1	8200	8200		29.15	0	1	154210			80736	5253	56277	56372	89609	89609					0.08440405488067881
TQKYLLIF	8	Unmodified	_TQKYLLIF_					0	0	0		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.837158203125	2	513.305136	1024.59572	0.12522	6.4274E-05	-3.4104	-0.0017506	-3.2852	-0.0016863	513.303218580813	68.779	0.72537	68.487	68.171	68.897	-0.29267					25	18	2	0	0	0	0.027866	1	8226	8226		55.504	0	1	157370			80737	5253	56277	56372	89610	89610					0.08440405488067881
TQLCQRALL	9	Unmodified	_TQLCQRALL_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.7789916992188	2	523.294776	1044.575	-0.77274	-0.00040437	0.25684	0.0001344	-0.5159	-0.00026997	523.2953697855162	78.407	0.74033	78.407	77.876	78.616	0					23	17	2	0	0	0	0.024319	1	9713	9713		47.657	0	1	119590	+		80738	21825	56278	56373	89611	89611					0.05449491836770903
TQLEKEVNV	9	Unmodified	_TQLEKEVNV_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2890625	2	530.287671	1058.56079	-0.31159	-0.00016523	1.7907	0.00094959	1.4791	0.00078436	530.2884227227145	45.611	0.61437	45.655	45.344	45.958	0.043877					41	17	3	0	0	0	0.56934	1	4408	4408		54.776	8.8041	1	7909800			80739	6240;18383	56279	56374	89612	89612					0.03385117889456524
TQLERGAR	8	Unmodified	_TQLERGAR_					0	0	0			REV__nc|ENSG00000105357|Q7Z406|MYH14	REV__nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.78887939453125	2	465.759415	929.504277	0.046496	2.1656E-05	3.1724	0.0014776	3.2189	0.0014992	465.76097507547456	70.293	0.61902	70.043	69.524	70.143	-0.25063					17	14	2	0	0	0	0.027866	1	8118	8118		32.812	0	1	115100	+		80740	21516	56280	56375	89613	89613					0.03670534843467976
TQLERGAR	8	Unmodified	_TQLERGAR_					0	0	0			REV__nc|ENSG00000105357|Q7Z406|MYH14	REV__nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.759415	929.504277	-0.092823	-4.3233E-05	5.6221	0.0026185	5.5292	0.0025753	465.7619948594407	69.733	0.64894	69.733	69.344	69.993	0	-0.15504	0.0010569	NaN	25.574	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89059	+		80741	21516	56280	56375							0.03670534843467976
TQLERVRR	8	Unmodified	_TQLERVRR_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.298583984375	2	529.314889	1056.61522	-0.14454	-7.6509E-05	0.76736	0.00040617	0.62281	0.00032966	529.3147935107999	18.513	0.24675	18.382	18.253	18.499	-0.13147					6	4	2	0	0	0	0.027866	1	279	279		37.159	10.466	1	15974	+		80742	26563	56281	56376	89614	89614					0.08918174551558877
TQLGAFYI	8	Unmodified	_TQLGAFYI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2641906738281	2	456.744911	911.475269	-0.056971	-2.6021E-05	0.66074	0.00030179	0.60377	0.00027577	456.7449596172374	80.994	0.96545	80.994	80.746	81.711	0					56	23	4	0	0	0	0.027866	1	10095	10095		45.952	26.848	1	1458600			80743	5683	56282	56377	89615	89615					0.01598997494465948
TQLIAHSV	8	Unmodified	_TQLIAHSV_					0	0	0			REV__nc|ENSG00000154451|Q96PP8-2|GBP5	REV__nc|ENSG00000154451|Q96PP8-2|GBP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.748046875	2	434.747985	867.481417	-0.20708	-9.0027E-05	0.081859	3.5588E-05	-0.12522	-5.4439E-05	434.7481411347547	65.246	1.5339	65.246	64.69	66.224	0					145	41	5	0	0	0	0.50717	1	7783	7783		84.916	0	1	102340000	+		80744	24960	56283	56378	89616	89616					0.04237515726003949
TQLIFCIFSR	10	Unmodified	_TQLIFCIFSR_					0	0	0		ENST00000476570.2_1_13:44430578-44443512:-|nuORF;nc|ENSG00000151773|Q5T0U0-2|CCDC122	ENST00000476570.2_1_13:44430578-44443512:-|nuORF	ENST00000476570.2_1_13:44430578-44443512:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8804016113281	3	409.889998	1226.64816	-0.22874	-9.3757E-05	3.2216	0.0013205	2.9929	0.0012267	409.89160353755796	33.23	0.61236	33.236	32.776	33.388	0.0066261					25	16	3	0	0	0	0.03519	1	2372	2372		9.2118	0	1	365970			80745	15088	56284	56379	89617	89617					0.04390620559365743
TQLKELFK	8	Unmodified	_TQLKELFK_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7762756347656	2	503.800217	1005.58588	-0.47879	-0.00024121	-3.9945	-0.0020125	-4.4733	-0.0022537	503.79861296767297	73.501	0.15803	73.311	73.197	73.355	-0.19027					5	3	2	0	0	0	0.027866	1	8632	8632		25.574	5.5773	1	32918	+		80746	27943	56285	56380	89618	89618					0.08331217482702868
TQLKGFPLN	9	Unmodified	_TQLKGFPLN_					0	0	0		ENSG00000138653|ENST00000264363|NDST4;NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	ENSG00000138653|ENST00000264363|NDST4	ENSG00000138653|ENST00000264363|NDST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7665100097656	2	509.290017	1016.56548	-0.12855	-6.5469E-05	2.0289	0.0010333	1.9004	0.00096783	509.2912262545998	65.6	0.73928	65.637	65.389	66.128	0.037384					30	19	2	0	0	0	0.024261	1	7700	7700		54.776	3.4409	1	316760			80747	5261	56286	56381	89619	89619					0.057860468229023354
TQLKGFPLN	9	Unmodified	_TQLKGFPLN_					0	0	0		ENSG00000138653|ENST00000264363|NDST4;NDST4|p.R843Efs*22|1|0.42|ENSG00000138653|chr4:114827908-114827908|G/-|frameshift_variant	ENSG00000138653|ENST00000264363|NDST4	ENSG00000138653|ENST00000264363|NDST4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.290017	1016.56548	-0.16547	-8.4274E-05	3.122	0.00159	2.9566	0.0015058	509.2911950390695	65.804	0.21025	65.563	65.414	65.625	-0.24145	-0.019194	0.00079791	NaN	54.776	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82019			80748	5261	56286	56381							0.057860468229023354
TQLKLFSH	8	Unmodified	_TQLKLFSH_					0	0	0			REV__ENST00000400933.2_1_1:247348170-247348461:-|nuORF	REV__ENST00000400933.2_1_1:247348170-247348461:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2874755859375	2	487.276909	972.539266	-0.59719	-0.000291	0.6056	0.00029509	0.0084081	4.0971E-06	487.27666852339917	38.908	0.66176	38.685	38.374	39.035	-0.22311					32	17	3	0	0	0	0.027866	1	3197	3197		13.775	0	1	190530	+		80749	31855	56287	56382	89620	89620					0.05189777651435179
TQLKVINWENT	11	Unmodified	_TQLKVINWENT_					0	0	0		ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.77496337890625	3	449.241865	1344.70376	-0.42393	-0.00019045	-0.94094	-0.00042271	-1.3649	-0.00061316	449.24141445945685	23.524	0.33328	23.463	23.267	23.6	-0.060862					16	7	3	0	0	0	0.024776	1	898	898		24.276	8.3553	1	86196			80750	6136	56288	56383	89621	89621					0.045201252807146375
TQLLKLKRLLH	11	Unmodified	_TQLLKLKRLLH_					0	0	0		nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;ENST00000498300.5_1_10:86198319-86273265:+|nuORF;nc|ENSG00000107771|Q9H7U1-4|CCSER2	nc|ENSG00000107771|Q9H7U1|CCSER2	nc|ENSG00000107771|Q9H7U1|CCSER2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.74273681640625	3	454.96964	1361.88709	0.083212	3.7859E-05	-4.1344	-0.001881	-4.0512	-0.0018432	454.96762314258757	42.597	1.3184	42.458	42.075	43.393	-0.13929					89	36	3	0	0	0	0.024865	1	4042	4042		8.4073	0	1	285680			80751	2854	56289	56384	89622	89622					0.22062143853031557
TQLNEIEIS	9	Unmodified	_TQLNEIEIS_					0	0	0			REV__nc|ENSG00000090565|O75154-2|RAB11FIP3	REV__nc|ENSG00000090565|O75154-2|RAB11FIP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.296875	2	523.771854	1045.52915	-0.5493	-0.00028771	-1.7929	-0.00093906	-2.3422	-0.0012268	524.2734460767361	51.718	0.1696	51.718	51.667	51.836	0					6	4	2	0	0	0	0.024418	1	5510	5510		45.972	11.8	1	37975	+		80752	20879	56290	56385	89623	89623					0.008211251355078275
TQLNIPARI	9	Unmodified	_TQLNIPARI_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ENST00000571720.2_1_16:68596924-68598598:+|nuORF	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.3087158203125	2	513.308741	1024.60293	-0.22423	-0.0001151	-0.27947	-0.00014345	-0.5037	-0.00025855	513.3085070056911	46.183	0.63267	46.183	45.919	46.551	0					42	17	3	0	0	0	0.42604	1	4552	4552		64.207	9.431	1	2285000			80753	9385	56291	56386	89624	89624					0.09161138088529697
TQLNIPARI	9	Unmodified	_TQLNIPARI_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ENST00000571720.2_1_16:68596924-68598598:+|nuORF	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.3085327148438	2	513.308741	1024.60293	-1.1499	-0.00059028	0.8191	0.00042045	-0.33085	-0.00016983	513.3090676079784	46.269	0.65906	46.118	45.856	46.515	-0.15156					44	18	3	0	0	0	0.12602	1	4547	4547		104.75	38.317	1	2330800			80754	9385	56291	56386	89625	89625					0.09161138088529697
TQLNIPARI	9	Unmodified	_TQLNIPARI_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ENST00000571720.2_1_16:68596924-68598598:+|nuORF	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.30810546875	2	513.308741	1024.60293	-0.49227	-0.00025269	-0.10413	-5.3448E-05	-0.5964	-0.00030614	513.3086310650284	46.147	0.86337	46.198	45.932	46.796	0.051399					58	24	4	0	0	0	0.34489	1	4484	4484		69.628	12.907	1	2673300			80755	9385	56291	56386	89626	89626					0.09161138088529697
TQLQHCLPI	9	Unmodified	_TQLQHCLPI_					0	0	0			REV__ENSG00000119326|ENST00000325551|CTNNAL1	REV__ENSG00000119326|ENST00000325551|CTNNAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7695922851562	2	526.781502	1051.54845	-0.72396	-0.00038137	0.61354	0.0003232	-0.11042	-5.8168E-05	526.7796660906424	53.85	0.81119	53.85	53.582	54.393	0					52	22	5	0	0	0	0.024292	1	5811	5811		49.442	7.0454	1	746600	+		80756	22449	56292	56387	89627	89627					0.02473802945451098
TQLQHCLPI	9	Unmodified	_TQLQHCLPI_					0	0	0			REV__ENSG00000119326|ENST00000325551|CTNNAL1	REV__ENSG00000119326|ENST00000325551|CTNNAL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.781502	1051.54845	0.064316	3.3881E-05	-0.44186	-0.00023276	-0.37754	-0.00019888	526.780568834027	53.705	0.59352	53.801	53.629	54.222	0.095669	-0.035095	-0.0008877	NaN	68.787	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793860	+		80757	22449	56292	56387							0.02473802945451098
TQLQPLFPK	9	Unmodified	_TQLQPLFPK_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.784912109375	2	536.313492	1070.61243	-0.79871	-0.00042836	-3.7194	-0.0019948	-4.5181	-0.0024231	536.3115811708568	31.887	0.51335	31.887	31.71	32.224	0					19	12	3	0	0	0	0.024511	1	2198	2198		25.574	0	1	318960	+		80758	20842	56293	56388	89628	89628					0.07994906374028687
TQLRSKFK	8	Unmodified	_TQLRSKFK_					0	0	0		ENST00000540449.5_1_2:70166938-70167127:+|nuORF	ENST00000540449.5_1_2:70166938-70167127:+|nuORF	ENST00000540449.5_1_2:70166938-70167127:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.3037109375	2	504.303458	1006.59236	1.5424	0.00077783	-1.2736	-0.00064227	0.2688	0.00013555	504.3026619777072	23.497	1.1647	23.306	22.897	24.061	-0.19117					64	26	4	0	0	0	0.50717	1	907	907		84.916	0	1	2165200			80759	16422	56294	56389	89629	89629					0.08933155434090168
TQLSHAVL	8	Unmodified	_TQLSHAVL_					0	0	0		ENSG00000187860|ENST00000338306|CCDC157	ENSG00000187860|ENST00000338306|CCDC157	ENSG00000187860|ENST00000338306|CCDC157	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7482604980469	2	434.747985	867.481417	-0.39117	-0.00017006	0.26586	0.00011558	-0.12531	-5.4476E-05	434.74823731018006	65.55	1.4355	65.278	64.786	66.221	-0.27283					145	38	5	0	0	0	0.74904	1	7809	7809		63.306	4.5243	1	100810000			80760	9670	56295	56390	89630	89630					0.0423751572599258
TQLSHAVL	8	Unmodified	_TQLSHAVL_					0	0	0		ENSG00000187860|ENST00000338306|CCDC157	ENSG00000187860|ENST00000338306|CCDC157	ENSG00000187860|ENST00000338306|CCDC157	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.747802734375	2	434.747985	867.481417	0.16778	7.2943E-05	-0.27376	-0.00011901	-0.10597	-4.6072E-05	434.7479913700864	65.234	1.4639	65.272	64.78	66.244	0.037384					144	39	5	0	0	0	0.77775	1	7725	7725		60.972	0	1	104280000			80761	9670	56295	56390	89631	89631					0.0423751572599258
TQLTGPVMPV	10	Unmodified	_TQLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MSMS	OPSCC_39_ClassI_Rep-1	1	521.784423828125	2	521.78371	1041.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.541	1	69.541	69.041	70.041	0								0	0	0	0.25093	1	8381	8381		79.713	15.505	1				80762	7696	56296	56391	89632	89632					0.03375267368346613
TQLTGPVMPV	10	Unmodified	_TQLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7840576171875	2	521.78371	1041.55287	0.47932	0.0002501	0.67334	0.00035134	1.1527	0.00060144	521.7836838911643	69.925	0.56635	69.632	69.312	69.878	-0.29291					47	13	5	0	0	0	0.62431	1	8401	8401		74.255	2.9593	1	4849000			80763	7696	56296	56391	89633	89633					0.03375267368346613
TQLTGPVMPV	10	Unmodified	_TQLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.7843017578125	2	521.78371	1041.55287	-0.52977	-0.00027643	2.402	0.0012533	1.8723	0.00097692	521.785452214949	69.622	1.2373	69.638	68.937	70.174	0.015129					98	31	5	0	0	0	0.37509	1	8315	8315		101.25	29.957	1	4995900			80764	7696	56296	56391	89634	89634					0.03375267368346613
TQLTGPVMPV	10	Unmodified	_TQLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7839965820312	2	521.78371	1041.55287	-0.6279	-0.00032763	1.2078	0.00063022	0.57992	0.0003026	521.7841437229965	69.978	0.54789	69.711	69.451	69.999	-0.26725					37	12	4	0	0	0	0.52765	1	8128	8128		85.161	24.189	1	1764400			80765	7696	56296	56391	89635	89635					0.03375267368346613
TQLTGPVMPV	10	Unmodified	_TQLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7833862304688	2	521.78371	1041.55287	0.24651	0.00012862	0.77356	0.00040363	1.0201	0.00053226	521.7842147745753	69.921	0.78505	69.67	69.358	70.143	-0.25063					37	18	3	0	0	0	0.31896	2	8124	8124;8135		107.01	35.712	1	2006200			80766	7696	56296	56391	89636;89637	89636					0.03375267368346613
TQLTGPVMPV	10	Unmodified	_TQLTGPVMPV_					0	0	0		ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000570149.1_1_16:89628679-89629447:+|nuORF	ENSG00000167526|ENST00000311528|RPL13	ENSG00000167526|ENST00000311528|RPL13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7833862304688	2	521.78371	1041.55287	0.14122	7.3684E-05	0.87493	0.00045652	1.0161	0.00053021	521.7843020030181	69.842	0.7808	69.62	69.307	70.087	-0.22246					45	18	5	0	0	0	0.57594	2	8102	8102;8112		79.713	22.541	1	2167500			80767	7696	56296	56391	89638;89639	89638					0.03375267368346613
TQLVALSLL	9	Unmodified	_TQLVALSLL_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.7637939453125	2	479.302593	956.590633	0.39729	0.00019042	-0.42432	-0.00020338	-0.027025	-1.2953E-05	479.3022140821996	73.47	0.58284	73.47	73.072	73.655	0					22	15	2	0	0	0	0.024457	1	8915	8915		37.159	1.5408	1	827090	+	+	80768	19589	56297	56392	89640	89640					0.11060101625469088
TQLVLLKN	8	Unmodified	_TQLVLLKN_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.2518005371094	2	464.794935	927.575317	-0.58068	-0.0002699	0.34122	0.0001586	-0.23946	-0.0001113	464.79491612155186	27.342	0.34575	27.173	27.057	27.402	-0.16816					11	7	2	0	0	0	0.027866	1	1516	1516		31.955	14.59	1	38985	+		80769	22952	56298	56393	89641	89641					0.1086323482828675
TQLVRLFGRL	10	Unmodified	_TQLVRLFGRL_					0	0	0		ENST00000253008.2_1_9:133556683-133557598:+|nuORF	ENST00000253008.2_1_9:133556683-133557598:+|nuORF	ENST00000253008.2_1_9:133556683-133557598:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.87554931640625	3	401.583785	1201.72953	0.069005	2.7711E-05	0.55703	0.0002237	0.62604	0.00025141	401.58378816636946	37.384	0.69437	37.164	36.885	37.579	-0.2195					41	17	4	0	0	0	0.03519	1	3011	3011		10.104	0.92098	1	516800			80770	11365	56299	56394	89642	89642					0.1367306431363886
TQLVSDLT	8	Unmodified	_TQLVSDLT_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.7532653808594	2	438.737283	875.460012	-0.044228	-1.9404E-05	1.5438	0.00067732	1.4996	0.00065792	438.73784354290456	49.795	0.82578	49.516	49.049	49.875	-0.27977					52	21	4	0	0	0	0.027866	1	4986	4986		54.776	5.3348	1	1137400	+		80771	24799	56300	56395	89643	89643					0.01730085906626755
TQMKTFQPV	9	Unmodified	_TQMKTFQPV_					0	0	0		chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.7997436523438	2	540.281334	1078.54812	-0.56256	-0.00030394	-1.5954	-0.00086197	-2.158	-0.0011659	540.2813218001453	68.213	0.72442	67.982	67.715	68.439	-0.23048					21	17	2	0	0	0	0.023274	1	7879	7879		67.494	21.521	1	189120			80772	330	56301	56396	89644	89644					0.011983832255964444
TQMKTFQPV	9	Unmodified	_TQMKTFQPV_					0	0	0		chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.281334	1078.54812	-0.24119	-0.00013031	-6.3465	-0.0034289	-6.5877	-0.0035592	540.2772937963276	67.876	0.80402	67.876	67.528	68.332	0	-0.070892	0.00022287	NaN	67.494	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557820			80773	330	56301	56396							0.011983832255964444
TQMKTFQPV	9	Unmodified	_TQMKTFQPV_					0	0	0		chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.281334	1078.54812	-0.37895	-0.00020474	-6.8572	-0.0037048	-7.2361	-0.0039095	540.2773795883419	68.245	0.77803	67.952	67.588	68.366	-0.29267	0.0054467	-0.00032892	NaN	67.494	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	774100			80774	330	56301	56396							0.011983832255964444
TQMKTFQPV	9	Unmodified	_TQMKTFQPV_					0	0	0		chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	chr12:90972980-90978088|209|13.86|0.15|6.57|-|0|EPYC,EPYC|1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.281334	1078.54812	-0.375	-0.0002026	-6.6636	-0.0036002	-7.0386	-0.0038028	540.2774348051927	67.958	0.91938	67.977	67.508	68.427	0.018921	0.030115	-0.00011977	NaN	67.494	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718430			80775	330	56301	56396							0.011983832255964444
TQMTRFML	8	Oxidation (M)	_TQMTRFM(Oxidation (M))L_		TQMTRFM(1)L		TQM(-47)TRFM(47)L	0	0	1			REV__ENST00000481340.1_1_X:2832668-2835863:-|nuORF	REV__ENST00000481340.1_1_X:2832668-2835863:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2718505859375	2	522.254262	1042.49397	-0.2684	-0.00014017	-2.5625	-0.0013383	-2.8309	-0.0014785	522.2526930057053	42.511	0.30853	42.379	42.183	42.491	-0.1322					12	8	2	0	0	0	0.027866	1	3902	3902		97.473	47.448	2	254960	+		80776	33453	56302	56397	89645	89645		914			-0.025575321976475607
TQMYIDAAQP	10	Unmodified	_TQMYIDAAQP_					0	0	0			REV__ENSG00000187017|ENST00000645284|ESPN	REV__ENSG00000187017|ENST00000645284|ESPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	568.302734375	2	569.265881	1136.51721	-0.28336	-0.00016131	2.8152	0.0016026	2.5318	0.0014413	569.2670606545813	49.445	0.4395	49.293	49.042	49.481	-0.1519					23	11	3	0	0	0	0.03519	1	5102	5102		17.468	0	1	558890	+		80777	27905	56303	56398	89646	89646					-0.045588148793285654
TQNCVCVTGL	10	Unmodified	_TQNCVCVTGL_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7928466796875	2	519.241352	1036.46815	-1.2736	-0.00066131	-3.8826	-0.002016	-5.1562	-0.0026773	519.7413624965138	55.504	0.48715	55.602	55.332	55.819	0.098015					16	12	2	0	0	0	0.03519	1	6031	6031		29.17	10.067	1	187070	+		80778	28014	56304	56399	89647	89647					-0.04862426439922274
TQNCVCVTGL	10	Unmodified	_TQNCVCVTGL_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.241352	1036.46815	0.22799	0.00011838	-4.4105	-0.0022901	-4.1825	-0.0021717	519.2376806843841	55.64	0.3564	55.64	55.536	55.892	0	0.019124	-0.00035639	NaN	41.427	13	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125080	+		80779	28014	56304	56399							-0.04862426439922274
TQNFLIQKI	9	Unmodified	_TQNFLIQKI_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.8240966796875	2	552.824224	1103.63389	0.046626	2.5776E-05	-0.70523	-0.00038987	-0.6586	-0.00036409	552.8237355049124	61.165	0.94824	61.165	60.884	61.832	0					58	24	3	0	0	0	0.016169	1	7073	7073		219.56	29.303	1	2420400			80780	5593	56305	56400	89648	89648					0.08622291402753035
TQNFLIQKI	9	Unmodified	_TQNFLIQKI_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.8238525390625	2	552.824224	1103.63389	-0.27942	-0.00015447	-0.24641	-0.00013622	-0.52583	-0.00029069	552.8239964613059	61.417	0.94005	61.19	60.899	61.839	-0.22663					58	24	3	0	0	0	0.016506	1	7081	7081		199.7	49.343	1	2484500			80781	5593	56305	56400	89649	89649					0.08622291402753035
TQNFLIQKI	9	Unmodified	_TQNFLIQKI_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.8239135742188	2	552.824224	1103.63389	-0.24367	-0.00013471	-0.43059	-0.00023804	-0.67427	-0.00037275	552.8239139276668	61.079	0.94847	61.15	60.831	61.779	0.071125					59	24	3	0	0	0	0.013337	2	6990	6978;6990		219.56	47.316	1	2620100			80782	5593	56305	56400	89650;89651	89651					0.08622291402753035
TQNKIPINQ	9	Unmodified	_TQNKIPINQ_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2760620117188	2	528.29583	1054.57711	-0.45837	-0.00024215	0.67394	0.00035604	0.21557	0.00011389	528.2960936640619	49.403	0.51283	49.25	49.006	49.518	-0.15277					22	13	2	0	0	0	0.024477	1	5049	5049		20.947	0	1	434270	+		80783	25846	56306	56401	89652	89652					0.05200243846206831
TQNKRDPLT	9	Unmodified	_TQNKRDPLT_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.7803955078125	2	536.790912	1071.56727	-1.4269	-0.00076596	1.1301	0.00060663	-0.29682	-0.00015933	536.7913556902034	35.111	0.48097	35.089	34.866	35.347	-0.021763					20	12	2	0	0	0	0.024397	1	2696	2696		56.721	15.943	1	477950		+	80784	548	56307	56402	89653	89653					0.034350558408505094
TQPAALPTLLP	11	Unmodified	_TQPAALPTLLP_					0	0	0		nc|ENSG00000174807|Q9HCU0-2|CD248;ENSG00000174807|ENST00000311330|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7916870117188	2	561.331882	1120.64921	0.51782	0.00029067	-3.516	-0.0019737	-2.9982	-0.001683	561.3292907044506	51.525	0.67398	51.407	51.123	51.797	-0.11744					45	17	4	0	0	0	0.024741	1	5364	5364		30.318	0	1	2307400			80785	8500	56308	56403	89654	89654					0.09371158199951424
TQPCGPRHRG	10	Unmodified	_TQPCGPRHRG_					0	0	0		ENST00000593500.1_1_19:49136845-49137643:-|nuORF	ENST00000593500.1_1_19:49136845-49137643:-|nuORF	ENST00000593500.1_1_19:49136845-49137643:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.3013305664062	2	554.775074	1107.53559	-0.10252	-5.6874E-05	-0.2887	-0.00016016	-0.39121	-0.00021704	555.277402053404	46.223	0.24049	46.274	46.167	46.408	0.051395					10	6	2	0	0	0	0.03519	1	4488	4488		42.864	14.783	1	140690			80786	17394	56309	56404	89655	89655					-0.013872153941065335
TQPCHVLS	8	Unmodified	_TQPCHVLS_					0	0	0			REV__ENST00000370397.7_1_10:101949281-101949353:-|nuORF	REV__ENST00000370397.7_1_10:101949281-101949353:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2656555175781	2	442.71837	883.422187	0.038401	1.7001E-05	-3.3647	-0.0014896	-3.3263	-0.0014726	442.7167964845839	39.241	0.66127	39.241	38.868	39.529	0					37	18	4	0	0	0	0.027866	1	3377	3377		30.504	0	1	480600	+		80787	31126	56310	56405	89656	89656					-0.02418703559851565
TQPDYMFR	8	Unmodified	_TQPDYMFR_					0	0	0			REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2570190429688	2	529.242209	1056.46987	-0.71499	-0.0003784	0.47551	0.00025166	-0.23947	-0.00012674	529.2419298901638	45.051	0.46058	44.798	44.63	45.091	-0.25252					15	11	2	0	0	0	0.027866	1	4216	4216		21.96	12.777	1	104520	+		80788	27944	56311	56406	89657	89657					-0.05611049359640674
TQPERRRL	8	Unmodified	_TQPERRRL_					0	0	0			REV__ENST00000334082.10_1_5:78809398-78809584:-|nuORF	REV__ENST00000334082.10_1_5:78809398-78809584:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2736206054688	2	528.307064	1054.59957	-0.74167	-0.00039183	-3.4377	-0.0018162	-4.1794	-0.002208	528.3057189567412	45.917	0.48757	45.917	45.748	46.236	0					19	13	2	0	0	0	0.027866	1	4539	4539		17.365	0	1	224050	+		80789	30511	56312	56407	89658	89658					0.07445888034499148
TQPFFIKFAL	10	Unmodified	_TQPFFIKFAL_					0	0	0			REV__ENST00000590181.5_1_17:33310024-33316690:+|nuORF	REV__ENST00000590181.5_1_17:33310024-33316690:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.7376403808594	3	404.56562	1210.67503	0.85804	0.00034714	1.7004	0.00068791	2.5584	0.001035	404.56635734528214	36.537	0.72519	36.537	36.162	36.887	0					41	19	3	0	0	0	0.03519	1	2853	2853		20.837	0	1	946390	+		80790	19796	56313	56408	89659	89659					0.07812052442227468
TQPFFIKFAL	10	Unmodified	_TQPFFIKFAL_					0	0	0			REV__ENST00000590181.5_1_17:33310024-33316690:+|nuORF	REV__ENST00000590181.5_1_17:33310024-33316690:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.7376403808594	3	404.56562	1210.67503	1.4814	0.00059933	1.0859	0.00043932	2.5673	0.0010387	404.56613698493857	36.501	0.83051	36.539	36.133	36.963	0.038044					49	22	3	0	0	0	0.03519	1	2810	2810		33.922	0	1	1042200	+		80791	19796	56313	56408	89660	89660					0.07812052442227468
TQPKRGWASC	10	Unmodified	_TQPKRGWASC_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.2684326171875	2	567.279657	1132.54476	-0.1766	-0.00010018	3.8722	0.0021966	3.6956	0.0020964	567.2816078768292	46.042	0.48916	45.781	45.593	46.083	-0.26118					20	12	2	0	0	0	0.03519	1	4435	4435		17.468	2.6031	1	329100	+		80792	36432	56314	56409	89661	89661					-0.016208668284207306
TQPKRLLLS	9	Unmodified	_TQPKRLLLS_					0	0	0			REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L	REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2745971679688	2	528.332216	1054.64988	-0.64416	-0.00034033	0.15181	8.0205E-05	-0.49235	-0.00026013	528.3323493297111	46.2	0.45866	46.2	46.021	46.48	0					28	12	3	0	0	0	0.02435	1	4562	4562		34.173	0	1	554810	+		80793	25878	56315	56410	89662	89662					0.12473997639654044
TQPKRLLLS	9	Unmodified	_TQPKRLLLS_					0	0	0			REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L	REV__nc|ENSG00000165359|Q5JSJ4-4|INTS6L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.274658203125	2	528.332216	1054.64988	-0.10391	-5.4897E-05	1.6894	0.00089257	1.5855	0.00083767	528.3322944506775	46.261	0.55173	46.313	46.063	46.615	0.051399					43	15	4	0	0	0	0.024374	1	4507	4507		49.442	23.991	1	429140	+		80794	25878	56315	56410	89663	89663					0.12473997639654044
TQPKWDEPG	9	Unmodified	_TQPKWDEPG_					0	0	0			REV__ENSG00000214978|ENST00000399363|GSG1L2	REV__ENSG00000214978|ENST00000399363|GSG1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2570190429688	2	529.251089	1056.48762	-1.0402	-0.00055055	-1.4016	-0.00074182	-2.4419	-0.0012924	529.2488314554292	44.805	0.43253	44.552	44.354	44.786	-0.25252					19	10	3	0	0	0	0.024539	1	4216	4216		9.7057	0	1	106550	+		80795	28795	56316	56411	89664	89664					-0.03836010833151704
TQPLFFHS	8	Unmodified	_TQPLFFHS_					0	0	0			REV__ENST00000480897.5_1_1:227921262-227921628:+|nuORF	REV__ENST00000480897.5_1_1:227921262-227921628:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.76116943359375	2	488.747985	975.481417	-0.51691	-0.00025264	-2.8426	-0.0013893	-3.3595	-0.0016419	488.7463568798141	36.965	0.69939	37	36.681	37.38	0.034924					44	17	3	0	0	0	0.027866	1	2906	2906		23.042	4.7181	1	848860	+		80796	33436	56317	56412	89665	89665					-0.00730484274004084
TQPLRQTV	8	Unmodified	_TQPLRQTV_					0	0	0		ENSG00000180875|ENST00000318160|GREM2	ENSG00000180875|ENST00000318160|GREM2	ENSG00000180875|ENST00000318160|GREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.24951171875	2	471.771991	941.529429	0.6579	0.00031038	-1.6193	-0.00076392	-0.96136	-0.00045354	471.7710735682699	20.901	0.24566	20.705	20.533	20.779	-0.19577					6	4	2	0	0	0	0.027866	1	599	599		23.042	0	1	32849			80797	9002	56318	56413	89666	89666					0.05632589646040742
TQPLVNRSV	9	Unmodified	_TQPLVNRSV_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.33135986328125	2	507.290548	1012.56654	-1.1772	-0.0005972	1.2274	0.00062263	0.050134	2.5432E-05	507.29080824766737	37.733	0.47789	37.733	37.559	38.037	0					19	13	2	0	0	0	0.024447	1	3090	3090		19.104	0	1	216460			80798	4810	56319	56414	89667	89667					0.06076261191810772
TQPLVNTY	8	Unmodified	_TQPLVNTY_					0	0	0		nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	nc|ENSG00000196091|Q00872-5|MYBPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.24481201171875	2	468.245275	934.475997	-0.18849	-8.8262E-05	-1.0016	-0.00046899	-1.1901	-0.00055725	468.2446654145871	103.65	2.5225	103.52	102.63	105.15	-0.12783					146	71	5	0	0	0	0.87148	1	12883	12883		53.351	9.2347	1	4433200			80799	9819	56320	56415	89668	89668					0.006137921435197313
TQPSTKIVN	9	Unmodified	_TQPSTKIVN_					0	0	0			REV__ENSG00000126070|ENST00000373191|AGO3	REV__ENSG00000126070|ENST00000373191|AGO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7975769042969	2	494.277106	986.53966	0.54935	0.00027153	-1.7443	-0.00086219	-1.195	-0.00059066	494.2768691380683	51.173	0.36734	51.173	50.992	51.359	0					20	9	3	0	0	0	0.023837	1	5389	5389		64.207	0	1	513900	+		80800	22878	56321	56416	89669	89669					0.04585152580614249
TQPSTKIVN	9	Unmodified	_TQPSTKIVN_					0	0	0			REV__ENSG00000126070|ENST00000373191|AGO3	REV__ENSG00000126070|ENST00000373191|AGO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79705810546875	2	494.277106	986.53966	-0.4302	-0.00021264	0.22769	0.00011254	-0.20251	-0.00010009	494.27755240670484	51.381	0.36168	51.232	51.008	51.369	-0.14916					21	9	3	0	0	0	0.023239	1	5395	5395		84.916	22.808	1	644990	+		80801	22878	56321	56416	89670	89670					0.04585152580614249
TQPTVQVLL	9	Unmodified	_TQPTVQVLL_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.31365966796875	2	499.797675	997.580796	0.51803	0.00025891	-0.023754	-1.1872E-05	0.49427	0.00024704	500.29935793666385	77.114	0.50723	77.114	76.919	77.426	0					16	11	2	0	0	0	0.024313	1	9558	9558		42.864	0	1	211160			80802	18349	56322	56417	89671	89671					0.08190913620103402
TQPVYRVSV	9	Unmodified	_TQPVYRVSV_					0	0	0		nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7444458007812	2	524.792924	1047.57129	-0.77375	-0.00040606	-1.118	-0.00058671	-1.8917	-0.00099277	524.7920410434311	40.26	0.7414	40.11	39.553	40.294	-0.1497					17	10	2	0	0	0	0.024539	1	3421	3421		14.865	0	1	414240			80803	10868	56323	56418	89672	89672					0.049411453345555856
TQQALLPSQ	9	Unmodified	_TQQALLPSQ_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1;SPATA31E1|p.P680H|1|0.28|ENSG00000177992|chr9:87886526-87886526|C/A|missense_variant	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.78460693359375	2	493.269281	984.52401	-0.3369	-0.00016618	-1.9145	-0.00094436	-2.2514	-0.0011105	493.26882621245386	46.615	0.45638	46.519	46.403	46.86	-0.096649					22	12	3	0	0	0	0.02435	1	4552	4552		42.396	0	1	1023000			80804	8782	56324	56419	89673	89673					0.031128660635772576
TQQEESNL	8	Unmodified	_TQQEESNL_					0	0	0		nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3;nc|ENSG00000113389|P17342-3|NPR3	nc|ENSG00000113389|P17342-2|NPR3	nc|ENSG00000113389|P17342-2|NPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.7628173828125	2	474.717079	947.419604	-0.24498	-0.0001163	1.1192	0.0005313	0.87421	0.000415	474.7174759041556	47.103	0.50833	47.162	46.88	47.389	0.059097					21	13	2	0	0	0	0.027866	1	4675	4675		30.504	7.4612	1	279540			80805	3290	56325	56420	89674	89674					-0.05620880483797919
TQQFVPPT	8	Unmodified	_TQQFVPPT_					0	0	0		nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;ENST00000552109.5_1_12:42554393-42631425:-|nuORF;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2;YAF2|p.E117Cfs*12|1|0.12|ENSG00000015153|chr12:42160776-42160783|GTAACTTC/-|frameshift_variant	nc|ENSG00000015153|Q8IY57-3|YAF2	nc|ENSG00000015153|Q8IY57-3|YAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.2388916015625	2	459.239993	916.465432	1.363	0.00062595	-2.4281	-0.0011151	-1.0651	-0.00048912	459.2388106976969	110.5	0.71297	110.5	110.2	110.91	0					46	22	3	0	0	0	1.0574	1	14033	14033		25.45	0.93098	1	112900			80806	929	56326	56421	89675	89675					0.0038580948910293955
TQQIVKILN	9	Unmodified	_TQQIVKILN_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.298095703125	2	528.824224	1055.63389	-0.78646	-0.0004159	0.40897	0.00021627	-0.37749	-0.00019963	528.8242523707048	52.178	0.82508	52.178	51.77	52.595	0					37	21	2	0	0	0	0.020937	1	5563	5563		98.629	13.469	1	455600			80807	7670	56327	56422	89676	89676					0.10830291402771763
TQQIVKILN	9	Unmodified	_TQQIVKILN_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2975463867188	2	528.824224	1055.63389	-0.25821	-0.00013655	-0.07719	-4.082E-05	-0.3354	-0.00017737	528.8239551015985	52.186	0.68334	52.038	51.846	52.53	-0.14735					31	17	2	0	0	0	0.022657	1	5551	5551		87.696	21.267	1	432720			80808	7670	56327	56422	89677	89677					0.10830291402771763
TQQQHILIS	9	Unmodified	_TQQQHILIS_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|114|2|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|114|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2997436523438	2	534.29583	1066.57711	-0.030344	-1.6212E-05	1.0285	0.0005495	0.99812	0.00053329	534.2961424399678	61.682	0.19679	61.456	61.298	61.495	-0.22663					6	4	2	0	0	0	0.024495	1	7111	7111		19.997	10.291	1	114330	+		80809	36223	56328	56423	89678	89678					0.04648243846236255
TQQQLCVQL	9	Unmodified	_TQQQLCVQL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.8026123046875	2	530.776416	1059.53828	-0.56586	-0.00030034	-2.2404	-0.0011891	-2.8062	-0.0014895	530.7748535116168	61.745	0.18017	61.816	61.67	61.85	0.071129					6	4	2	0	0	0	0.024344	1	7068	7068		37.812	12.237	1	75839			80810	5448	56329	56424	89679	89679					0.010891952201973254
TQQQLPQKV	9	Unmodified	_TQQQLPQKV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.3032836914062	2	535.303655	1068.59276	-1.048	-0.00056098	0.27725	0.00014841	-0.77072	-0.00041257	535.3037373816776	35.069	0.86189	35.069	34.746	35.608	0					58	22	4	0	0	0	0.016542	2	2671	2671;2685		154.12	26.79	1	3097900			80811	2112	56330	56425	89680;89681	89680					0.061205303632732466
TQQQLPQKV	9	Unmodified	_TQQQLPQKV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.3038940429688	2	535.303655	1068.59276	-1.1699	-0.00062626	0.40173	0.00021505	-0.76818	-0.00041121	535.303794774778	34.868	0.87483	34.847	34.551	35.426	-0.021767					56	22	4	0	0	0	0.043667	2	2631	2619;2631		131.03	24.024	1	3091600			80812	2112	56330	56425	89682;89683	89683					0.061205303632732466
TQQQLPQKV	9	Unmodified	_TQQQLPQKV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;SF3A1|p.G432Lfs*33|1|0.07|ENSG00000099995|chr22:30340272-30340278|AAGTCCA/-|frameshift_variant	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.3038330078125	2	535.303655	1068.59276	-1.1143	-0.00059649	0.35598	0.00019056	-0.75832	-0.00040593	535.3037558582326	34.878	0.75044	34.929	34.599	35.349	0.050255					56	19	4	0	0	0	0.016542	2	2588	2588;2600		154.12	20.774	1	2864100			80813	2112	56330	56425	89684;89685	89684					0.061205303632732466
TQQRLMALE	9	Unmodified	_TQQRLMALE_					0	0	0			REV__ENST00000491720.5_1_2:182783318-182792989:+|nuORF	REV__ENST00000491720.5_1_2:182783318-182792989:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2817993164062	2	545.289691	1088.56483	-0.54017	-0.00029455	1.3493	0.00073575	0.80911	0.0004412	545.2903835249544	39.725	0.39582	39.501	39.302	39.698	-0.22311					13	9	2	0	0	0	0.024506	1	3378	3378		23.042	0	1	171400	+		80814	23855	56331	56426	89686	89686					0.024088841115371906
TQRAEVIR	8	Unmodified	_TQRAEVIR_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7838134765625	2	486.78289	971.551228	-0.20217	-9.8412E-05	2.7247	0.0013263	2.5225	0.0012279	486.78418384241957	100.88	2.281	100.89	100.39	102.67	0.0090332					143	53	5	0	0	0	0.72249	1	12825	12825		65.465	4.4934	1	16375000			80815	11066	56332	56427	89687	89687					0.0643139439459901
TQRAQDVW	8	Unmodified	_TQRAQDVW_					0	0	0		nc|ENSG00000119866|Q9H165-2|BCL11A;ENST00000479026.1_1_2:60679712-60687546:-|nuORF	nc|ENSG00000119866|Q9H165-2|BCL11A	nc|ENSG00000119866|Q9H165-2|BCL11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2694091796875	2	502.251423	1002.48829	-0.065772	-3.3034E-05	-1.4116	-0.00070898	-1.4774	-0.00074202	502.25061086460636	36.625	0.36523	36.408	36.205	36.57	-0.21661					11	8	2	0	0	0	0.027866	1	2875	2875		19.997	0	1	123920			80816	18214	56333	56428	89688	89688					-0.01285171393442397
TQRCLRLC	8	Unmodified	_TQRCLRLC_					0	0	0			REV__ENST00000367510.7_1_1:185014628-185056725:+|nuORF	REV__ENST00000367510.7_1_1:185014628-185056725:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.7660827636719	2	496.760046	991.50554	-0.37907	-0.00018831	-3.021	-0.0015007	-3.4001	-0.001689	496.7584067118848	61.7	1.3267	61.443	60.809	62.136	-0.25725					50	32	2	0	0	0	0.027866	1	6998	6998		13.775	2.9098	1	365700	+		80817	31023	56334	56429	89689	89689					0.009447096163398783
TQRLPLDQV	9	Unmodified	_TQRLPLDQV_					0	0	0		ENSG00000121895|ENST00000381938|TMEM156	ENSG00000121895|ENST00000381938|TMEM156	ENSG00000121895|ENST00000381938|TMEM156	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.3030395507812	2	535.303655	1068.59276	-0.48531	-0.00025979	-0.39288	-0.00021031	-0.8782	-0.0004701	535.3032237888527	46.075	0.83886	46.075	45.748	46.587	0					60	23	4	0	0	0	0.56934	1	4529	4529		54.776	0.053964	1	3164800			80818	3894	56335	56430	89690	89690					0.061205303632732466
TQRRKSLP	8	Unmodified	_TQRRKSLP_					0	0	0		ENST00000414996.1_1_3:9710441-9730764:+|nuORF;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14	ENST00000414996.1_1_3:9710441-9730764:+|nuORF	ENST00000414996.1_1_3:9710441-9730764:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.78533935546875	2	493.298707	984.582862	0.4493	0.00022164	1.7441	0.00086037	2.1934	0.001082	493.2995408730169	56.75	0.50491	56.525	56.347	56.851	-0.2248					20	12	2	0	0	0	0.027866	1	6184	6184		37.159	0	1	868880			80819	7135	56336	56431	89691	89691					0.08995387148559075
TQRWEPDEIP	10	Unmodified	_TQRWEPDEIP_					0	0	0			REV__nc|ENSG00000147421|Q6NT76-2|HMBOX1	REV__nc|ENSG00000147421|Q6NT76-2|HMBOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.58209228515625	3	424.206932	1269.59897	-1.3511	-0.00057313	1.4333	0.00060803	0.08226	3.4895E-05	424.2075592084524	43.954	0.2888	43.954	43.8	44.089	0					13	7	2	0	0	0	0.03519	1	4173	4173		18.531	0	1	97943	+		80820	24553	56337	56432	89692	89692					-0.02504996195852982
TQRWQNSLRH	10	Unmodified	_TQRWQNSLRH_					0	0	0		ENSG00000171956|ENST00000396057|FOXB1;ENSG00000204612|ENST00000376708|FOXB2	ENSG00000171956|ENST00000396057|FOXB1	ENSG00000171956|ENST00000396057|FOXB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7696228027344	3	442.565565	1324.67486	-0.25322	-0.00011206	0.44279	0.00019596	0.18957	8.3899E-05	442.5658367318794	20.602	0.33486	20.497	20.326	20.661	-0.10477					11	6	2	0	0	0	0.03519	1	541	541		14.086	0	1	24838			80821	8224	56338	56433	89693	89693					0.025514454949188803
TQRWQNSLRH	10	Unmodified	_TQRWQNSLRH_					0	0	0		ENSG00000171956|ENST00000396057|FOXB1;ENSG00000204612|ENST00000376708|FOXB2	ENSG00000171956|ENST00000396057|FOXB1	ENSG00000171956|ENST00000396057|FOXB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.76971435546875	3	442.565565	1324.67486	1.1853	0.00052457	-1.0877	-0.0004814	0.097557	4.3175E-05	442.5649002446813	20.546	0.39318	20.615	20.366	20.759	0.068901					10	7	2	0	0	0	0.03519	1	487	487		27.047	10.517	1	14868			80822	8224	56338	56433	89694	89694					0.025514454949188803
TQSDEPNL	8	Unmodified	_TQSDEPNL_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24322509765625	2	452.206347	902.39814	0.46451	0.00021005	-2.8539	-0.0012905	-2.3894	-0.0010805	452.2056208048151	53.819	0.3519	53.819	53.691	54.043	0					16	9	3	0	0	0	0.027866	1	5875	5875		30.504	14.03	1	362020			80823	3060	56339	56434	89695	89695					-0.05696265512528953
TQSFRWHP	8	Unmodified	_TQSFRWHP_					0	0	0		ENSG00000164674|ENST00000611299|SYTL3;nc|ENSG00000164674|Q4VX76-2|SYTL3	ENSG00000164674|ENST00000611299|SYTL3	ENSG00000164674|ENST00000611299|SYTL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2738037109375	2	529.761958	1057.50936	-0.64465	-0.00034151	3.2596	0.0017268	2.6149	0.0013853	529.7634382087368	47.034	0.43983	47.034	46.812	47.252	0					20	11	2	0	0	0	0.027866	1	4707	4707		47.916	7.1374	1	177740			80824	7305	56340	56435	89696	89696					-0.017091612939111656
TQSFYCVS	8	Carbamidomethyl (C)	_TQSFYC(Carbamidomethyl (C))VS_	TQSFYC(1)VS		TQSFYC(79)VS		0	1	0			REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	496.2139587402344	2	496.213117	990.411682	-0.78009	-0.00038709	3.9915	0.0019806	3.2114	0.0015935	496.2150552241136	69.666	0.92052	69.399	69.079	69.999	-0.26724					52	21	4	0	0	0	0.56592	1	8087	8087		79.451	16.473	1	1146900	+		80825	29875	56341	56436	89697	89697	391				-0.08390731004919871
TQSFYCVS	8	Carbamidomethyl (C)	_TQSFYC(Carbamidomethyl (C))VS_					0	1	0			REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.213117	990.411682	0.17289	8.579E-05	2.8399	0.0014092	3.0128	0.001495	496.2144276931862	69.159	0.84885	69.159	68.861	69.71	0	-0.13768	-0.0004692	NaN	79.451	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	801430	+		80826	29875	56341	56436			391				-0.08390731004919871
TQSFYCVS	8	Carbamidomethyl (C)	_TQSFYC(Carbamidomethyl (C))VS_					0	1	0			REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.213117	990.411682	0.48547	0.0002409	2.6199	0.0013	3.1054	0.0015409	496.2142879617499	69.489	0.81738	69.196	68.896	69.714	-0.29292	-0.10065	-0.00068748	NaN	79.451	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	750910	+		80827	29875	56341	56436			391				-0.08390731004919871
TQSFYCVS	8	Carbamidomethyl (C)	_TQSFYC(Carbamidomethyl (C))VS_					0	1	0			REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.213117	990.411682	-0.30865	-0.00015316	3.3802	0.0016773	3.0716	0.0015242	496.21469987051444	69.242	1.0541	69.257	68.9	69.955	0.015121	-0.039713	6.7078E-05	NaN	79.451	48	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	879640	+		80828	29875	56341	56436			391				-0.08390731004919871
TQSFYCVS	8	Carbamidomethyl (C)	_TQSFYC(Carbamidomethyl (C))VS_					0	1	0			REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	496.213117	990.411682	-0.78009	-0.00038709	3.9915	0.0019806	3.2114	0.0015935	496.2150552241136	69.666	0.92052	69.399	69.079	69.999	-0.26724	0.10204	0.00067369	NaN	79.451	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146900	+		80829	29875	56341	56436			391				-0.08390731004919871
TQSFYCVS	8	Carbamidomethyl (C)	_TQSFYC(Carbamidomethyl (C))VS_					0	1	0			REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	496.213117	990.411682	0.12837	6.3697E-05	3.2878	0.0016315	3.4162	0.0016952	496.2145858256494	69.622	0.94941	69.372	69.033	69.983	-0.25063	0.075131	-2.4646E-05	NaN	79.451	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1183900	+		80830	29875	56341	56436			391				-0.08390731004919871
TQSFYCVS	8	Carbamidomethyl (C)	_TQSFYC(Carbamidomethyl (C))VS_					0	1	0			REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	REV__ENST00000280346.10_1_11:111895897-111896233:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	496.213117	990.411682	-0.20563	-0.00010204	3.7251	0.0018484	3.5195	0.0017464	496.21481278927575	69.62	0.98831	69.398	69.02	70.008	-0.22245	0.10087	0.00040932	NaN	79.451	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1260700	+		80831	29875	56341	56436			391				-0.08390731004919871
TQSGSLLFI	9	Unmodified	_TQSGSLLFI_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2690124511719	2	483.26875	964.522947	-0.41707	-0.00020156	0.67896	0.00032812	0.26189	0.00012656	483.26912384690826	83.13	1.507	83.13	82.793	84.3	0					95	34	5	0	0	0	0.082191	3	10388	10376;10388;10400		116.9	22.897	1	10967000			80832	6074	56342	56437	89698;89699;89700	89699					0.039266516946554475
TQSGSLLFI	9	Unmodified	_TQSGSLLFI_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2689208984375	2	483.26875	964.522947	0.73448	0.00035495	-0.43749	-0.00021142	0.29699	0.00014353	483.26860464900534	83.199	1.5415	83.108	82.787	84.328	-0.090454					96	35	5	0	0	0	0.15029	2	10365	10353;10365		99.375	17.07	1	10385000			80833	6074	56342	56437	89701;89702	89702					0.039266516946554475
TQSGSLLFI	9	Unmodified	_TQSGSLLFI_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.26885986328125	2	483.26875	964.522947	-0.88347	-0.00042695	1.0503	0.00050757	0.16682	8.0619E-05	483.26932738337007	83.044	1.6305	83.071	82.745	84.375	0.02655					103	37	5	0	0	0	0.091713	3	10324	10288;10300;10324		113.41	22.442	1	12746000			80834	6074	56342	56437	89703;89704;89705	89705					0.039266516946554475
TQSLQWPL	8	Unmodified	_TQSLQWPL_					0	0	0		ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.28631591796875	2	486.761092	971.507631	-0.12201	-5.9391E-05	-0.62821	-0.00030579	-0.75022	-0.00036518	486.76184527129357	49.595	0.56256	49.444	49.182	49.745	-0.1512					29	14	3	0	0	0	0.027866	1	5104	5104		58.782	7.4465	1	123760			80835	16603	56343	56438	89706	89706					0.02073784897470432
TQSLQWPL	8	Unmodified	_TQSLQWPL_					0	0	0		ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.761092	971.507631	-0.11413	-5.5552E-05	3.4532	0.0016809	3.3391	0.0016254	486.7626871969457	49.477	0.45041	49.376	49.226	49.676	-0.1008	-0.061591	0.00049436	NaN	40.778	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264170			80836	16603	56343	56438							0.02073784897470432
TQSLQWPL	8	Unmodified	_TQSLQWPL_					0	0	0		ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.761092	971.507631	0.037956	1.8476E-05	3.1174	0.0015175	3.1554	0.0015359	486.7624246322272	49.772	0.64113	49.492	49.161	49.802	-0.27977	0.054851	0.00016746	NaN	40.778	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345610			80837	16603	56343	56438							0.02073784897470432
TQSLQWPL	8	Unmodified	_TQSLQWPL_					0	0	0		ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.761092	971.507631	0.50636	0.00024648	2.9364	0.0014293	3.4428	0.0016758	486.76228280223233	49.619	0.52569	49.438	49.191	49.717	-0.18071	0.00036477	-8.7772E-06	NaN	40.778	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352260			80838	16603	56343	56438							0.02073784897470432
TQSLSLAVI	9	Unmodified	_TQSLSLAVI_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7685241699219	2	466.276575	930.538597	0.14612	6.8133E-05	-1.4782	-0.00068926	-1.3321	-0.00062112	466.27552614605065	74.385	0.42683	74.395	74.138	74.565	0.0096512					14	9	2	0	0	0	0.024374	1	8995	8995		40.778	2.9666	1	95108			80839	1466	56344	56439	89707	89707					0.07054938211717854
TQSNKVSVT	9	Unmodified	_TQSNKVSVT_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2822570800781	2	482.258914	962.503274	0.28698	0.0001384	3.6819	0.0017756	3.9689	0.001914	482.26065060763904	46.528	0.67508	46.528	46.021	46.696	0					29	18	3	0	0	0	0.024466	1	4565	4565		39.253	0	1	515210			80840	4268	56345	56440	89708	89708					0.020522756839113754
TQSNNPESQ	9	Unmodified	_TQSNNPESQ_					0	0	0			REV__nc|ENSG00000162782|Q8NAT2|TDRD5	REV__nc|ENSG00000162782|Q8NAT2|TDRD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.7383728027344	2	502.71761	1003.42067	0.68181	0.00034276	-1.7034	-0.00085632	-1.0216	-0.00051356	502.71548662249853	36.177	0.51682	35.979	35.776	36.292	-0.19829					22	13	3	0	0	0	0.024477	1	2837	2837		20.947	0	1	337850	+		80841	36847	56346	56441	89709	89709					-0.08090666114901524
TQSSKLVQHQR	11	Unmodified	_TQSSKLVQHQR_					0	0	0		ENSG00000188283|ENST00000684119|ZNF383	ENSG00000188283|ENST00000684119|ZNF383	ENSG00000188283|ENST00000684119|ZNF383	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2713623046875	3	437.909109	1310.7055	0.14002	6.1317E-05	1.1593	0.00050765	1.2993	0.00056897	437.9095516727562	20.632	0.64504	20.408	20.117	20.762	-0.22344					27	12	3	0	0	0	0.024746	1	583	583		21.032	0.19508	1	47435			80842	9705	56347	56442	89710	89710					0.06257179089334386
TQSVLKEL	8	Unmodified	_TQSVLKEL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2845153808594	2	459.26875	916.522947	0.14913	6.8492E-05	3.8328	0.0017603	3.9819	0.0018288	459.26890697781613	56.243	2.3173	56.243	55.249	57.567	0					103	64	5	0	0	0	0.027866	1	6303	6303		71.296	0	1	810810			80843	5547	56348	56443	89711	89711					0.06134651694674176
TQSVLKEL	8	Unmodified	_TQSVLKEL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2841796875	2	459.26875	916.522947	-0.22592	-0.00010376	2.5789	0.0011844	2.353	0.0010806	459.26882392564096	56.343	2.33	56.187	55.26	57.59	-0.15601					116	63	5	0	0	0	0.027866	1	6280	6280		45.952	14.422	1	805080			80844	5547	56348	56443	89712	89712					0.06134651694674176
TQSVRRGVK	9	Unmodified	_TQSVRRGVK_					0	0	0			REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8011474609375	2	515.809439	1029.60433	-0.64125	-0.00033076	2.5211	0.0013004	1.8798	0.00096963	515.8104306767873	36.987	0.73546	37.019	36.678	37.413	0.032269					41	18	3	0	0	0	0.024438	1	2905	2905		44.377	0.26039	1	537690	+		80845	37074	56349	56444	89713	89713					0.09070772177278741
TQTALKFL	8	Unmodified	_TQTALKFL_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7508239746094	2	461.273835	920.533118	0.10452	4.8212E-05	-2.3617	-0.0010894	-2.2572	-0.0010412	461.2726408003767	34.156	0.34986	34.151	33.948	34.298	-0.0045624					13	8	2	0	0	0	0.027866	1	2509	2509		31.955	6.5047	1	74817			80846	1839	56350	56445	89714	89714					0.06967259419900529
TQTAVITRI	9	Unmodified	_TQTAVITRI_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.80096435546875	2	501.800749	1001.58694	0.11178	5.6092E-05	-1.1402	-0.00057213	-1.0284	-0.00051604	501.8002032003808	46.464	1.501	46.464	46.09	47.591	0					138	41	5	0	0	0	0.038547	7	4585	4564;4573;4585;4597;4609;4622;4635		134.77	38.95	1	40403000			80847	2327	56351	56446	89715;89716;89717;89718;89719;89720;89721	89717					0.08621431851599937
TQTAVITRI	9	Unmodified	_TQTAVITRI_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.8005065917969	2	501.800749	1001.58694	-0.8903	-0.00044676	-0.14363	-7.2074E-05	-1.0339	-0.00051883	501.8007093755976	46.544	1.5811	46.391	46.024	47.606	-0.153					153	43	6	0	0	0	0.038547	8	4603	4558;4568;4580;4591;4603;4616;4629;4665		134.77	38.047	1	41649000			80848	2327	56351	56446	89722;89723;89724;89725;89726;89727;89728;89729	89726					0.08621431851599937
TQTAVITRI	9	Unmodified	_TQTAVITRI_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.80035400390625	2	501.800749	1001.58694	-0.056011	-2.8107E-05	-0.97445	-0.00048898	-1.0305	-0.00051708	501.8002919452868	46.405	1.4184	46.456	46.063	47.482	0.051395					139	39	5	0	0	0	0.023452	8	4552	4495;4505;4516;4528;4540;4552;4565;4577		146.79	50.97	1	44212000			80849	2327	56351	56446	89730;89731;89732;89733;89734;89735;89736;89737	89735					0.08621431851599937
TQTFQEQN	8	Unmodified	_TQTFQEQN_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2505187988281	2	498.225071	994.435589	-0.20848	-0.00010387	-4.4731	-0.0022286	-4.6816	-0.0023325	498.2216054721741	25.438	0.37356	25.267	24.997	25.371	-0.17078					18	8	3	0	0	0	0.027866	1	1168	1168		23.042	0	1	78021			80850	5733	56352	56447	89738	89738					-0.0618517424690026
TQTKEEMTR	9	Unmodified	_TQTKEEMTR_					0	0	0		FSTL1|p.E280K|1|0.36|ENSG00000163430|chr3:120399927-120399927|C/T|missense_variant	FSTL1|p.E280K|1|0.36|ENSG00000163430|chr3:120399927-120399927|C/T|missense_variant	FSTL1|p.E280K|1|0.36|ENSG00000163430|chr3:120399927-120399927|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.3145141601562	2	562.274238	1122.53392	-0.86501	-0.00048637	-3.7821	-0.0021266	-4.6471	-0.0026129	562.2721975420337	21.782	0.80952	21.782	21.342	22.152	0					23	16	2	0	0	0	0.024313	1	697	697		35.152	0	1	38068			80851	17661	56353	56448	89739	89739					-0.02244313993378455
TQTKTVPK	8	Unmodified	_TQTKTVPK_					0	0	0			REV__ENST00000356978.8_1_14:90872513-90872717:+|nuORF	REV__ENST00000356978.8_1_14:90872513-90872717:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.21734619140625	2	451.768917	901.523281	0.35611	0.00016088	1.0877	0.00049141	1.4438	0.00065229	451.76932769013575	25.125	0.49269	25.205	25.006	25.499	0.08009					16	11	2	0	0	0	0.027866	1	1094	1094		44.117	0	1	47066	+		80852	30809	56354	56449	89740	89740					0.06858071414524147
TQTKTVPK	8	Unmodified	_TQTKTVPK_					0	0	0			REV__ENST00000356978.8_1_14:90872513-90872717:+|nuORF	REV__ENST00000356978.8_1_14:90872513-90872717:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	451.768917	901.523281	-0.20541	-9.2798E-05	1.3289	0.00060034	1.1235	0.00050754	451.7691001259162	25.547	0.46163	25.376	25.118	25.579	-0.17151	0.085436	0.00019786	NaN	44.117	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96670	+		80853	30809	56354	56449							0.06858071414524147
TQTLALQLQ	9	Unmodified	_TQTLALQLQ_					0	0	0		nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	nc|ENSG00000110497|Q9C0C7-4|AMBRA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.27734375	2	508.292756	1014.57096	-0.49663	-0.00025243	0.41317	0.00021001	-0.083453	-4.2419E-05	508.2930054370574	34.031	0.35602	34.031	33.894	34.25	0					16	8	2	0	0	0	0.024337	1	2532	2532		49.536	0	1	611920			80854	3047	56355	56450	89741	89741					0.06425725614712974
TQTMKVILD	9	Unmodified	_TQTMKVILD_					0	0	0		TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.26953125	2	524.788992	1047.56343	-1.3371	-0.00070167	2.8669	0.0015045	1.5298	0.00080284	524.7906611572525	35.237	0.36317	35.237	35.129	35.492	0					13	9	2	0	0	0	0.024457	1	2725	2725		29.15	7.1897	1	87718			80855	2559	56356	56451	89742	89742					0.04155250022790824
TQTRLTMP	8	Unmodified	_TQTRLTMP_					0	0	0		ENST00000533465.1_1_11:65349377-65351970:+|nuORF	ENST00000533465.1_1_11:65349377-65351970:+|nuORF	ENST00000533465.1_1_11:65349377-65351970:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7634582519531	2	474.252577	946.490601	-0.37782	-0.00017918	-0.68469	-0.00032472	-1.0625	-0.0005039	474.25203057223376	22.99	0.59747	22.805	22.554	23.151	-0.18539					29	12	3	0	0	0	0.027866	1	885	885		53.351	0	1	139270			80856	16316	56357	56452	89743	89743					0.015215410200084989
TQTRWPGP	8	Unmodified	_TQTRWPGP_					0	0	0			REV__nc|ENSG00000143740|Q5SQN1-2|SNAP47	REV__nc|ENSG00000143740|Q5SQN1-2|SNAP47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.31036376953125	2	471.743234	941.471915	0.0046715	2.2038E-06	0.3594	0.00016955	0.36408	0.00017175	471.7431536268383	48.361	0.27387	48.361	48.174	48.448	0					14	7	3	0	0	0	0.027866	1	4934	4934		11.511	0	1	90754	+		80857	36739	56358	56453	89744	89744					-0.0011625255953049418
TQTSQHKF	8	Unmodified	_TQTSQHKF_					0	0	0			REV__ENST00000340807.3_1_13:99910724-99913984:-|nuORF	REV__ENST00000340807.3_1_13:99910724-99913984:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.76116943359375	2	488.745973	975.477394	1.1791	0.0005763	-0.56305	-0.00027519	0.61608	0.00030111	488.7455065062967	37.028	0.76556	37.028	36.685	37.45	0					37	19	3	0	0	0	0.027866	1	2977	2977		30.504	12.179	1	859900	+		80858	30623	56359	56454	89745	89745					-0.011325737677111647
TQTSQHKF	8	Unmodified	_TQTSQHKF_					0	0	0			REV__ENST00000340807.3_1_13:99910724-99913984:-|nuORF	REV__ENST00000340807.3_1_13:99910724-99913984:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.745973	975.477394	0.038971	1.9047E-05	-6.8207	-0.0033336	-6.7817	-0.0033145	488.742327060438	37.116	0.15113	36.923	36.851	37.002	-0.193	-0.018366	-0.0068846	NaN	49.442	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34245	+		80859	30623	56359	56454							-0.011325737677111647
TQTTHELTI	9	Unmodified	_TQTTHELTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.2718505859375	2	522.272021	1042.52949	-0.28854	-0.0001507	-0.34964	-0.00018261	-0.63818	-0.0003333	522.2718053601671	42.339	2.2532	42.339	41.258	43.511	0					179	63	7	0	0	0	0.014034	6	3884	3862;3872;3884;3896;3909;3921		166.68	71.122	1	30428000			80860	7950	56360	56455	89746;89747;89748;89749;89750;89751	89748					0.009925448553758542
TQTTHELTI	9	Unmodified	_TQTTHELTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2714233398438	2	522.272021	1042.52949	-0.15856	-8.2814E-05	-0.30156	-0.0001575	-0.46012	-0.00024031	522.2718185344406	42.413	2.5444	42.439	41.008	43.553	0.026012					193	71	7	0	0	0	0.014034	6	3845	3824;3833;3845;3856;3869;3881		166.68	70.488	1	29904000			80861	7950	56360	56455	89752;89753;89754;89755;89756;89757	89754					0.009925448553758542
TQTVPCNKV	9	Unmodified	_TQTVPCNKV_					0	0	0		ENST00000506191.1_1_4:15780037-15818323:+|nuORF	ENST00000506191.1_1_4:15780037-15818323:+|nuORF	ENST00000506191.1_1_4:15780037-15818323:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2270812988281	2	495.257859	988.501166	-0.99156	-0.00049108	-0.72507	-0.00035909	-1.7166	-0.00085017	495.25670203693426	37.631	0.93818	37.567	37.415	38.353	-0.063389					32	26	2	0	0	0	0.024397	1	3189	3189		47.657	12.039	1	132970			80862	15739	56361	56456	89758	89758					0.006455236744500326
TQTVPCNKV	9	Unmodified	_TQTVPCNKV_					0	0	0		ENST00000506191.1_1_4:15780037-15818323:+|nuORF	ENST00000506191.1_1_4:15780037-15818323:+|nuORF	ENST00000506191.1_1_4:15780037-15818323:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.257859	988.501166	-0.60615	-0.0003002	-0.61031	-0.00030226	-1.2165	-0.00060246	495.2566295550556	37.839	0.90266	37.871	37.264	38.167	0.032269	0.14244	4.2748E-05	NaN	44.377	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171320			80863	15739	56361	56456							0.006455236744500326
TQTYDIAF	8	Unmodified	_TQTYDIAF_					0	0	0		ENSG00000165449|ENST00000395348|SLC16A9	ENSG00000165449|ENST00000395348|SLC16A9	ENSG00000165449|ENST00000395348|SLC16A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.79315185546875	2	479.729458	957.444362	-0.0027959	-1.3413E-06	-4.1414	-0.0019867	-4.1442	-0.0019881	479.7275299351861	30.831	0.25898	30.59	30.41	30.669	-0.24109					7	5	2	0	0	0	0.027866	1	1981	1981		7.1934	0	1	74573			80864	7414	56362	56457	89759	89759					-0.03606200610443011
TQTYDYLWGAI	11	Unmodified	_TQTYDYLWGAI_					0	0	0			REV__nc|ENSG00000168679|O15374-3|SLC16A4	REV__nc|ENSG00000168679|O15374-3|SLC16A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.24273681640625	3	444.215316	1329.62412	-0.40629	-0.00018048	1.9829	0.00088081	1.5766	0.00070034	444.5500164893033	38.436	0.19768	38.354	38.294	38.492	-0.082516					7	4	2	0	0	0	0.024739	1	3201	3201		28.577	3.4507	1	36164	+		80865	26283	56363	56458	89760	89760					-0.02750941393287576
TQVAGTNTLP	10	Unmodified	_TQVAGTNTLP_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.8005676269531	2	501.266739	1000.51892	-0.28151	-0.00014111	3.743	0.0018762	3.4615	0.0017351	501.7695876779669	46.821	0.22819	46.872	46.796	47.024	0.051395					8	5	2	0	0	0	0.03519	1	4589	4589		65.157	19.205	1	67553			80866	7370	56364	56459	89761	89761					0.01868562200957058
TQVDAMQQEQQ	11	Unmodified	_TQVDAMQQEQQ_					0	0	0		ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7976989746094	3	435.862836	1304.56668	-0.41541	-0.00018106	-1.2858	-0.00056044	-1.7012	-0.0007415	435.86209000671977	22.351	0.99235	22.166	21.377	22.369	-0.18539					39	20	3	0	0	0	0.024797	1	739	739		20.315	0.28454	1	91650			80867	14700	56365	56460	89762	89762					-0.0734215166114609
TQVENFSTF	9	Unmodified	_TQVENFSTF_					0	0	0		nc|ENSG00000107593|Q9P0L9-4|PKD2L1;PKD2L1|p.R697Efs*28|1|0.24|ENSG00000107593|chr10:100290439-100290439|G/-|frameshift_variant;nc|ENSG00000107593|Q9P0L9-3|PKD2L1;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7850341796875	2	536.750921	1071.48729	-1.0346	-0.00055531	-4.3061	-0.0023113	-5.3407	-0.0028666	536.7483218593503	55.902	0.67307	55.745	55.462	56.135	-0.15655					40	17	3	0	0	0	0.024447	1	6001	6001		25.574	0	1	775580			80868	2845	56366	56461	89763	89763					-0.04559430552990307
TQVFLQRLLHR	11	Unmodified	_TQVFLQRLLHR_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.9471740722656	3	470.949127	1409.82555	1.6611	0.00078228	-3.7609	-0.0017712	-2.0998	-0.00098889	470.9472048713722	17.012	0.80229	16.858	16.655	17.458	-0.15403					33	15	4	0	0	0	1.0921	1	134	134		13.508	0.55046	1	73522	+		80869	26852	56367	56462	89764	89764					0.13703212153723143
TQVFREQY	8	Unmodified	_TQVFREQY_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000575976.1_1_17:5290923-5291292:-|nuORF;ENST00000576862.5_1_17:5290923-5298221:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7664794921875	2	535.766906	1069.51926	-0.66131	-0.00035431	0.15371	8.2353E-05	-0.5076	-0.00027195	535.7668581103388	30.427	1.7055	30.183	29.737	31.443	-0.24415					130	41	5	0	0	0	0.56592	2	1919	1919;1956		79.451	5.4682	1	3884100			80870	2909	56368	56463	89765;89766	89765					-0.012720180792030078
TQVFREQY	8	Unmodified	_TQVFREQY_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000575976.1_1_17:5290923-5291292:-|nuORF;ENST00000576862.5_1_17:5290923-5298221:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7664794921875	2	535.766906	1069.51926	-1.1028	-0.00059084	0.53523	0.00028676	-0.56757	-0.00030408	535.76707367268	30.339	1.9122	30.161	29.194	31.106	-0.17818					120	45	4	0	0	0	0.44952	1	1912	1912		90.37	16.395	1	3379500			80871	2909	56368	56463	89767	89767					-0.012720180792030078
TQVIDKLTI	9	Unmodified	_TQVIDKLTI_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7901000976562	2	515.810782	1029.60701	-0.19682	-0.00010152	-0.12574	-6.4859E-05	-0.32256	-0.00016638	515.81062424175	52.161	0.70225	52.014	51.745	52.447	-0.14735					38	18	3	0	0	0	0.0242	1	5605	5605		60.118	0	1	1093800	+		80872	27578	56369	56464	89768	89768					0.09339182791563871
TQVLDVIAP	9	Unmodified	_TQVLDVIAP_					0	0	0		ENST00000474543.5_1_20:57569146-57569728:+|nuORF	ENST00000474543.5_1_20:57569146-57569728:+|nuORF	ENST00000474543.5_1_20:57569146-57569728:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7930908203125	2	478.276575	954.538597	-0.63625	-0.0003043	1.5848	0.00075799	0.94859	0.00045369	478.27660437391097	53.984	0.5223	53.848	53.564	54.087	-0.13617					39	16	3	0	0	0	0.024457	1	5702	5702		10.265	0	1	686440			80873	15035	56370	56465	89769	89769					0.05950938211697121
TQVLKKMN	8	Unmodified	_TQVLKKMN_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2926025390625	2	481.278595	960.542637	-0.13678	-6.583E-05	0.56638	0.00027259	0.4296	0.00020676	481.2787127182112	55.795	0.62154	55.579	55.336	55.958	-0.21607					29	16	2	0	0	0	0.027866	1	6043	6043		23.042	0	1	681280			80874	8771	56371	56466	89770	89770					0.06078704433764415
TQVNQNITV	9	Unmodified	_TQVNQNITV_					0	0	0		CON__P0C1U8	CON__P0C1U8	CON__P0C1U8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7720031738281	2	508.772188	1015.52982	-0.54006	-0.00027477	2.0837	0.0010601	1.5436	0.00078533	508.77200365050044	33.945	1.2	33.945	33.626	34.826	0					58	30	3	0	0	0	0.31037	1	2490	2490		74.255	5.4682	1	5734900		+	80875	517	56372	56467	89771	89771					0.022679645752305078
TQVTCKVL	8	Unmodified	_TQVTCKVL_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.2698059082031	2	446.252046	890.489538	-0.012341	-5.5074E-06	-3.8368	-0.0017122	-3.8492	-0.0017177	446.25018708017666	65.709	0.41759	65.436	65.263	65.681	-0.27282					18	11	2	0	0	0	0.027866	1	7731	7731		27.882	0	1	194440	+		80876	22566	56373	56468	89772	89772					0.039913266511234724
TQVTCKVL	8	Unmodified	_TQVTCKVL_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	446.2691650390625	2	446.252046	890.489538	-0.033597	-1.4993E-05	-3.5574	-0.0015875	-3.591	-0.0016025	446.2503098391457	65.4	0.41441	65.438	65.254	65.668	0.037384					17	11	2	0	0	0	0.027866	1	7641	7641		27.882	0	1	284070	+		80877	22566	56373	56468	89773	89773					0.039913266511234724
TQVVGILKI	9	Unmodified	_TQVVGILKI_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.8185119628906	2	485.81841	969.622267	0.359	0.00017441	-0.41931	-0.00020371	-0.060315	-2.9302E-05	485.81805784033173	66.046	0.46336	66.046	65.76	66.224	0					35	11	4	0	0	0	0.014918	3	7856	7845;7856;7867		162.25	31.522	1	3779500			80878	10239	56374	56469	89774;89775;89776	89775					0.13624094379406415
TQVVGILKI	9	Unmodified	_TQVVGILKI_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.8191223144531	2	485.81841	969.622267	-0.26232	-0.00012744	0.24422	0.00011865	-0.018099	-8.7928E-06	485.8183415175806	66.396	0.4772	66.115	65.826	66.303	-0.28149					34	12	4	0	0	0	0.013293	3	7874	7863;7874;7886		185.55	60.955	1	3562000			80879	10239	56374	56469	89777;89778;89779	89778					0.13624094379406415
TQVVGILKI	9	Unmodified	_TQVVGILKI_					0	0	0		ENST00000426421.5_1_7:116544367-116557918:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENST00000426421.5_1_7:116544367-116557918:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.81842041015625	2	485.81841	969.622267	-0.54948	-0.00026695	0.48332	0.0002348	-0.066163	-3.2143E-05	485.81849609503126	66.032	0.51173	66.062	65.812	66.324	0.030106					32	13	3	0	0	0	0.020687	2	7772	7772;7784		148.99	55.791	1	4332300			80880	10239	56374	56469	89780;89781	89780					0.13624094379406415
TQVYFSMF	8	Unmodified	_TQVYFSMF_					0	0	0		ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.274169921875	2	511.736228	1021.4579	-0.48899	-0.00025024	0.23109	0.00011826	-0.25791	-0.00013198	511.736175777157	55.477	0.52201	55.261	54.967	55.489	-0.21551					34	14	3	0	0	0	0.027866	1	5892	5892		29.15	0	1	776310			80881	9681	56375	56470	89782	89782					-0.05196666102835934
TQWAPPGSVP	10	Unmodified	_TQWAPPGSVP_					0	0	0		ENST00000262366.7_1_16:4388647-4388779:+|nuORF	ENST00000262366.7_1_16:4388647-4388779:+|nuORF	ENST00000262366.7_1_16:4388647-4388779:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7672119140625	2	520.263999	1038.51345	-0.83575	-0.00043481	-3.3246	-0.0017297	-4.1603	-0.0021645	520.2621018374414	22.714	1.1494	22.714	22.291	23.441	0					100	25	6	0	0	0	1.0508	1	811	811		39.253	2.8061	1	5519400			80882	11497	56376	56471	89783	89783					-0.004271165908448893
TQWHLAWCVC	10	Unmodified	_TQWHLAWCVC_					0	0	0		ENST00000421116.1_1_22:42973213-42976277:-|nuORF	ENST00000421116.1_1_22:42973213-42976277:-|nuORF	ENST00000421116.1_1_22:42973213-42976277:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.21221923828125	3	416.188049	1245.54232	-0.39589	-0.00016476	3.3388	0.0013896	2.943	0.0012248	416.18895584056077	27.879	0.40829	27.96	27.759	28.168	0.081291					15	9	3	0	0	0	0.03519	1	1505	1505		15.333	0	1	39763			80883	13993	56377	56472	89784	89784					-0.07063038557726031
TQWLRAHS	8	Unmodified	_TQWLRAHS_					0	0	0			REV__ENSG00000116221|ENST00000360840|MRPL37	REV__ENSG00000116221|ENST00000360840|MRPL37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.77166748046875	2	499.761958	997.509363	-1.3343	-0.00066685	1.1849	0.00059217	-0.14944	-7.4682E-05	499.76083839128387	28.932	0.47661	28.687	28.534	29.011	-0.24524					14	10	2	0	0	0	0.027866	1	1714	1714		17.365	3.2278	1	53217	+		80884	22272	56378	56473	89785	89785					0.010508387060895075
TQWRRPLPAR	10	Unmodified	_TQWRRPLPAR_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2646484375	3	427.582667	1279.72617	-0.0036574	-1.5638E-06	-0.7886	-0.00033719	-0.79226	-0.00033876	427.58239020720464	54.427	0.14751	54.277	54.191	54.339	-0.15036					5	3	2	0	0	0	0.03519	1	5929	5929		23.378	10.42	1	101930			80885	4787	56379	56474	89786	89786					0.09749814259635059
TQWWTDVL	8	Unmodified	_TQWWTDVL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.8241577148438	2	524.758549	1047.50255	-0.026466	-1.3888E-05	1.306	0.00068533	1.2795	0.00067144	525.2609928513749	49.711	0.48311	49.605	49.411	49.894	-0.10558					20	12	2	0	0	0	0.027866	1	5053	5053		50.025	4.0726	1	338510	+		80886	24983	56380	56475	89787	89787					-0.019305189651504406
TQWWTDVL	8	Unmodified	_TQWWTDVL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	524.758549	1047.50255	-0.47141	-0.00024738	0.39579	0.00020769	-0.075627	-3.9686E-05	524.7586223795953	49.574	0.62413	49.574	49.362	49.986	0	-0.073755	-0.00028663	NaN	24.203	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1467000	+		80887	24983	56380	56475							-0.019305189651504406
TQWWTDVL	8	Unmodified	_TQWWTDVL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	524.758549	1047.50255	-0.1855	-9.7341E-05	0.14522	7.6205E-05	-0.040277	-2.1136E-05	524.7584339644383	49.808	0.58897	49.657	49.407	49.996	-0.1512	0.0089051	-0.0005496	NaN	24.203	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330300	+		80888	24983	56380	56475							-0.019305189651504406
TQWWTDVL	8	Unmodified	_TQWWTDVL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	524.758549	1047.50255	-1.099	-0.0005767	1.1276	0.00059171	0.028603	1.501E-05	524.7589059224177	49.493	0.66806	49.567	49.279	49.947	0.074196	-0.080247	0.00048141	NaN	24.203	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1323900	+		80889	24983	56380	56475							-0.019305189651504406
TQWWTDVL	8	Unmodified	_TQWWTDVL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	524.758549	1047.50255	-0.0065099	-3.4161E-06	1.2692	0.00066603	1.2627	0.00066261	525.2610630651162	50.077	0.63401	49.797	49.397	50.031	-0.27977	0.14918	0.00063004	NaN	24.203	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576320	+		80890	24983	56380	56475							-0.019305189651504406
TQWWTDVL	8	Unmodified	_TQWWTDVL_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.758549	1047.50255	0.47708	0.00025035	2.8979	0.0015207	3.375	0.001771	524.7587759845999	49.867	0.55727	49.686	49.421	49.978	-0.18071	0.038567	0.0023394	NaN	24.203	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352530	+		80891	24983	56380	56475							-0.019305189651504406
TQYSALKV	8	Unmodified	_TQYSALKV_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.25543212890625	2	455.255643	908.496732	0.033426	1.5217E-05	0.81527	0.00037116	0.84869	0.00038637	455.2555907508415	45.532	0.9499	45.576	45.074	46.024	0.043877					81	27	4	0	0	0	0.74904	1	4368	4368		63.306	0	1	5196900			80892	5441	56381	56476	89788	89788					0.03882382523192973
TQYYFDVI	8	Unmodified	_TQYYFDVI_					0	0	0		NDNF|p.F315I|1|0.19|ENSG00000173376|chr4:121037028-121037028|A/T|missense_variant	NDNF|p.F315I|1|0.19|ENSG00000173376|chr4:121037028-121037028|A/T|missense_variant	NDNF|p.F315I|1|0.19|ENSG00000173376|chr4:121037028-121037028|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3148193359375	2	524.752933	1047.49131	-0.26258	-0.00013779	-3.5575	-0.0018668	-3.8201	-0.0020046	525.2530280191677	73.744	0.43044	73.479	73.217	73.647	-0.26479					19	10	3	0	0	0	0.027866	1	8712	8712		20.947	4.2295	1	303750			80893	18866	56382	56477	89789	89789					-0.030533410592852306
TRACHPYDS	9	Unmodified	_TRACHPYDS_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2573852539062	2	525.227091	1048.43963	-0.71716	-0.00037667	-3.7006	-0.0019437	-4.4178	-0.0023203	525.2250675554474	46.052	1.0115	45.85	45.492	46.504	-0.20226					64	27	4	0	0	0	0.024374	1	4385	4385		49.442	12.282	1	3902200			80894	4022	56383	56478	89790	89790					-0.08265408024840326
TRADRYKKAL	10	Unmodified	_TRADRYKKAL_					0	0	0			REV__RNF213-CSNK1D|1|fusion	REV__RNF213-CSNK1D|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3558349609375	2	611.356754	1220.69895	-0.79597	-0.00048662	-0.30054	-0.00018373	-1.0965	-0.00067036	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.0992	1	11527	11527		32.812	1.2826	1	4189200	+		80895	37445	56384	56479	89791	89791					0.09743285928607293
TRAEFQAKI	9	Unmodified	_TRAEFQAKI_					0	0	0		ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3111572265625	2	532.298373	1062.58219	-0.68023	-0.00036209	0.42274	0.00022503	-0.25749	-0.00013706	532.2984926736406	35.753	0.39566	35.541	35.354	35.75	-0.21246					23	10	3	0	0	0	0.024466	1	2716	2716		47.657	3.5405	1	1338300			80896	9287	56385	56480	89792	89792					0.05340547708851773
TRAFTSRLL	9	Unmodified	_TRAFTSRLL_					0	0	0			REV__ENSG00000178764|ENST00000314393|ZHX2	REV__ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7684326171875	2	532.81419	1063.61383	-1.3538	-0.00072131	1.2188	0.00064939	-0.13498	-7.1919E-05	532.8146892681173	25.19	0.77965	25.155	24.86	25.639	-0.034395					49	18	4	0	0	0	0.024541	1	1121	1121		23.042	10.083	1	864680	+		80897	27204	56386	56481	89793	89793					0.0845654046281652
TRAGARIP	8	Unmodified	_TRAGARIP_					0	0	0		nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	nc|ENSG00000136811|Q5BJF6-9|ODF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.2540588378906	2	421.253769	840.492984	0.71107	0.00029954	-0.48871	-0.00020587	0.22236	9.3669E-05	421.25343309500204	83.612	1.0668	83.4	83.049	84.116	-0.21159					57	24	3	0	0	0	1.0574	1	10114	10114		20.947	1.587	1	583200			80898	18306	56387	56482	89794	89794					0.06635757539982023
TRAHIQLIKAS	11	Unmodified	_TRAHIQLIKAS_					0	0	0			REV__ENSG00000196757|ENST00000254321|ZNF700	REV__ENSG00000196757|ENST00000254321|ZNF700	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.3716430664062	2	619.372404	1236.73025	0.10969	6.7938E-05	-2.6718	-0.0016548	-2.5621	-0.0015869	619.3707577954212	100.03	0.81097	100.04	99.701	100.51	0.010109					50	20	3	0	0	0	1.0624	1	12794	12794		21.686	0	1	871680	+		80899	28223	56388	56483	89795	89795					0.121358589627107
TRAPPPAAP	9	Unmodified	_TRAPPPAAP_					0	0	0			REV__nc|ENSG00000115266|O95996-3|APC2	REV__nc|ENSG00000115266|O95996-3|APC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2480163574219	2	439.248152	876.481751	-0.367	-0.00016121	0.13569	5.9602E-05	-0.23131	-0.0001016	439.24816198999156	33.403	2.0226	33.403	32.186	34.209	0					158	53	5	0	0	0	0.75397	1	2438	2438		42.396	3.1433	1	10783000	+		80900	22184	56389	56484	89796	89796					0.03856935445844556
TRAPTATPTL	10	Unmodified	_TRAPTATPTL_					0	0	0		NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	NOTCH1|p.C381Vfs*250|1|0.31|ENSG00000148400|chr9:136518252-136518252|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2639770507812	2	514.790381	1027.56621	-0.48796	-0.00025119	1.1903	0.00061277	0.70238	0.00036158	514.7903352479791	47.913	0.48333	47.816	47.593	48.076	-0.097553					24	12	3	0	0	0	0.03519	1	4723	4723		26.693	12.556	1	415270			80901	18882	56390	56485	89797	89797					0.05352841471949432
TRARGPPI	8	Unmodified	_TRARGPPI_					0	0	0		ENST00000529635.5_1_11:67174176-67177222:+|nuORF;ENSG00000175463|ENST00000542590|TBC1D10C	ENST00000529635.5_1_11:67174176-67177222:+|nuORF	ENST00000529635.5_1_11:67174176-67177222:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7801208496094	2	434.261594	866.508634	-0.29447	-0.00012788	-0.1626	-7.0611E-05	-0.45707	-0.00019849	434.2609664301085	38.151	0.39463	37.932	37.755	38.15	-0.21848					17	11	3	0	0	0	0.027866	1	3096	3096		24.203	7.4978	1	182570			80902	8560	56391	56486	89798	89798					0.07004044057043757
TRARHLIMTIL	11	Unmodified	_TRARHLIMTIL_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-6|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-6|GLIPR1L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.25909423828125	3	442.26758	1323.78091	-0.25328	-0.00011202	3.4741	0.0015365	3.2208	0.0014245	442.2703282013119	27.253	0.14208	27.253	27.144	27.286	0					5	3	2	0	0	0	0.024759	1	1458	1458		23.378	11.446	1	89169	+		80903	36985	56392	56487	89799	89799					0.1319706501606106
TRAVVVKKIQT	11	Unmodified	_TRAVVVKKIQT_					0	0	0		CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.8994140625	2	621.898254	1241.78196	0.5184	0.00032239	3.7578	0.002337	4.2762	0.0026594	621.9003389778508	105.39	0.39869	105.23	105.09	105.48	-0.16484					24	10	3	0	0	0	1.0989	1	13113	13113		11.636	1.9303	1	1135300		+	80904	577	56393	56488	89800	89800					0.17073602656591902
TRCNMNGLSER	11	Unmodified	_TRCNMNGLSER_					0	0	0			REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.7197570800781	3	427.532656	1279.57614	-0.068069	-2.9102E-05	3.6438	0.0015578	3.5757	0.0015287	427.5342592172372	22.068	0.33413	21.877	21.613	21.947	-0.19072					10	6	2	0	0	0	0.024772	1	712	712		13.73	0	1	71389	+		80905	25495	56394	56489	89801	89801					-0.05246661856631363
TRCQDLMRYKC	11	Unmodified	_TRCQDLMRYKC_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333;REV__nc|ENSG00000160961|Q96JL9-2|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2944641113281	3	472.889675	1415.64719	0.24484	0.00011578	4.2047	0.0019884	4.4496	0.0021042	472.8920459236471	32.277	0.43333	32.04	31.824	32.258	-0.23666					12	9	2	0	0	0	0.024742	1	2214	2214		53.597	15.785	1	49919	+		80906	25364;31628	56395	56490	89802	89802					-0.04400285143469773
TRCYFLLY	8	Unmodified	_TRCYFLLY_					0	0	0		ENST00000155674.9_1_22:17618446-17618698:-|nuORF	ENST00000155674.9_1_22:17618446-17618698:-|nuORF	ENST00000155674.9_1_22:17618446-17618698:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7750244140625	2	539.773145	1077.53174	0.41511	0.00022406	2.2717	0.0012262	2.6868	0.0014503	539.7742232686568	77.252	0.86641	77.01	76.666	77.532	-0.24232					37	21	2	0	0	0	0.65272	1	9199	9199		71.378	0.082209	1	1835000			80907	11110	56396	56491	89803	89803					-0.003926979404923259
TRDPEAPQ	8	Unmodified	_TRDPEAPQ_					0	0	0			REV__ENSG00000122386|ENST00000219091|ZNF205	REV__ENSG00000122386|ENST00000219091|ZNF205	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7669982910156	2	457.222331	912.430109	-0.52641	-0.00024068	1.3035	0.00059598	0.77707	0.0003553	457.2227387740873	23.612	0.3772	23.551	23.308	23.685	-0.060862					13	8	2	0	0	0	0.027866	1	916	916		16.473	0	1	45989	+		80908	22640	56397	56492	89804	89804					-0.0296085303871223
TRDPRPDSH	9	Unmodified	_TRDPRPDSH_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8163452148438	2	540.762686	1079.51082	-0.39969	-0.00021614	-2.9256	-0.0015821	-3.3253	-0.0017982	540.7611024314016	45.672	0.68067	45.42	45.258	45.938	-0.25252					28	18	3	0	0	0	0.024323	1	4372	4372		53.351	7.3995	1	397350	+		80909	27311	56398	56493	89805	89805					-0.02575571995816972
TRDRLIIKQFM	11	Unmodified	_TRDRLIIKQFM_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.2593688964844	3	474.274623	1419.80204	-0.84546	-0.00040098	3.8955	0.0018475	3.05	0.0014465	474.2761682700484	44.332	0.57191	44.088	43.79	44.362	-0.2444					24	15	2	0	0	0	0.024823	1	4081	4081		26.75	8.9166	1	337900	+		80910	25826	56399	56494	89806	89806					0.1089303032490534
TRDVSRVAL	9	Unmodified	_TRDVSRVAL_					0	0	0			REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.79620361328125	2	508.795998	1015.57744	0.36768	0.00018708	-0.41467	-0.00021098	-0.046987	-2.3907E-05	508.79572781930943	102.57	0.85091	102.44	101.9	102.75	-0.12931					31	19	3	0	0	0	0.80003	1	12743	12743		39.253	5.0803	1	300190	+		80911	19174	56400	56495	89807	89807					0.07027663566088904
TRDVSRVAL	9	Unmodified	_TRDVSRVAL_					0	0	0			REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	REV__ASAP2|p.P786Rfs*25|1|0.29|ENSG00000151693|chr2:9388514-9388514|C/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	508.795998	1015.57744	0.11828	6.0178E-05	-0.040277	-2.0493E-05	0.077999	3.9686E-05	508.795892717671	102.66	0.5137	102.48	102.17	102.68	-0.17034	0.03185	0.00022632	NaN	39.253	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240760	+		80912	19174	56400	56495							0.07027663566088904
TREDKTPDL	9	Unmodified	_TREDKTPDL_					0	0	0			REV__ENST00000430012.6_2_19:40317481-40317958:-|nuORF	REV__ENST00000430012.6_2_19:40317481-40317958:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.3042602539062	2	537.774928	1073.5353	0.19197	0.00010324	3.6524	0.0019642	3.8444	0.0020674	538.2783572045385	86.126	0.72867	86.126	85.789	86.517	0					24	16	2	0	0	0	0.022411	1	10824	10824		90.37	17.491	1	196120	+		80913	30719	56401	56496	89808	89808					0.0014764336706321046
TRELALKLN	9	Unmodified	_TRELALKLN_					0	0	0			REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P	REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.80859375	2	529.321848	1056.62914	-0.33583	-0.00017776	1.5513	0.00082113	1.2155	0.00064337	529.8222291918245	73.287	0.41145	73.297	73.107	73.519	0.0096512					23	10	5	0	0	0	0.024405	1	8841	8841		44.117	0	1	792060	+		80914	37204	56402	56497	89809	89809					0.10309407260001535
TRELSPTEP	9	Unmodified	_TRELSPTEP_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1;ENST00000473361.5_1_1:32259103-32263870:-|nuORF;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7902221679688	2	515.264196	1028.51384	-0.23693	-0.00012208	-0.78441	-0.00040418	-1.0213	-0.00052626	515.263733471266	62.085	0.74409	61.859	61.375	62.119	-0.22663					60	19	4	0	0	0	0.024477	1	7146	7146		20.947	0	1	4097900			80915	4816;37964	56403	56498	89810	89810					0.0007225833833217621
TRELSPTEP	9	Unmodified	_TRELSPTEP_					0	0	0		nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1;ENST00000473361.5_1_1:32259103-32263870:-|nuORF;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;SPOCD1|p.V1013Gfs*47|1|0.09|ENSG00000134668|chr1:31791216-31791216|A/-|frameshift_variant	nc|ENSG00000134668|Q6ZMY3-3|SPOCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7897338867188	2	515.264196	1028.51384	-0.92924	-0.0004788	0.038297	1.9733E-05	-0.89094	-0.00045907	515.2640621817453	61.787	1.0373	61.852	61.125	62.162	0.06488					75	27	4	0	0	0	0.024405	1	7053	7053		35.618	1.4457	1	3994700			80916	4816;37964	56403	56498	89811	89811					0.0007225833833217621
TRELVPPIVL	10	Unmodified	_TRELVPPIVL_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.853515625	2	568.855524	1135.69649	-0.66068	-0.00037583	-3.3379	-0.0018988	-3.9986	-0.0022746	568.8534924489414	101.15	1.6136	101.15	100.78	102.39	0					120	36	5	0	0	0	1.0665	1	12955	12955		37.159	0	1	8405100	+		80917	20389	56404	56499	89812	89812					0.1340743747093711
TRELVPPIVL	10	Unmodified	_TRELVPPIVL_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.853271484375	2	568.855524	1135.69649	-0.25628	-0.00014578	-3.6319	-0.0020661	-3.8882	-0.0022118	568.8533241327464	101.1	1.4966	101.11	100.79	102.28	0.0090332					103	34	5	0	0	0	1.0665	1	12931	12931		37.159	0	1	8744300	+		80918	20389	56404	56499	89813	89813					0.1340743747093711
TRETSQRW	8	Unmodified	_TRETSQRW_					0	0	0		ENST00000409393.6_1_14:105953225-105953282:+|nuORF	ENST00000409393.6_1_14:105953225-105953282:+|nuORF	ENST00000409393.6_1_14:105953225-105953282:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2901000976562	2	532.267604	1062.52066	-0.86625	-0.00046108	-2.8773	-0.0015315	-3.7436	-0.0019926	532.2652166993536	55.581	0.18194	55.365	55.268	55.45	-0.21551					7	4	2	0	0	0	0.027866	1	5967	5967		17.365	6.4994	1	105060			80919	13777	56405	56500	89814	89814					-0.008103839904379129
TRFLKESTV	9	Unmodified	_TRFLKESTV_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.815673828125	2	540.806031	1079.59751	-0.29714	-0.00016069	-0.51677	-0.00027947	-0.81391	-0.00044016	540.8057342198147	45.793	0.61142	45.696	45.427	46.039	-0.096649					38	15	3	0	0	0	0.024418	1	4342	4342		54.776	3.4409	1	1687300	+		80920	27972	56406	56501	89815	89815					0.06089414506027424
TRFMDHSI	8	Unmodified	_TRFMDHSI_					0	0	0		ENSG00000257987|ENST00000548380|TEX49	ENSG00000257987|ENST00000548380|TEX49	ENSG00000257987|ENST00000548380|TEX49	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.3081970214844	2	503.742376	1005.4702	-0.041994	-2.1154E-05	-3.4508	-0.0017383	-3.4928	-0.0017595	503.74049841017694	42.602	0.829	42.479	42.195	43.024	-0.12299					53	21	4	0	0	0	0.027866	1	3876	3876		68.485	8.1907	1	2009700			80921	10925	56407	56502	89816	89816					-0.03231629639788025
TRFSGQSYV	9	Unmodified	_TRFSGQSYV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7589111328125	2	522.759081	1043.50361	-0.52619	-0.00027507	0.32603	0.00017043	-0.20016	-0.00010464	522.7591533565277	41.165	1.0272	41.029	40.712	41.74	-0.13554					66	26	4	0	0	0	0.29609	1	3622	3622		76.17	15.198	1	5741100			80922	1818;17643	56408	56503	89817	89817					-0.01640304596230635
TRFSGQSYV	9	Unmodified	_TRFSGQSYV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.75830078125	2	522.759081	1043.50361	-0.13436	-7.0237E-05	0.21607	0.00011295	0.081707	4.2713E-05	522.7589563033606	41.374	1.0335	41.146	40.807	41.841	-0.2278					77	26	5	0	0	0	0.38419	2	3639	3639;3652		66.962	10.356	1	5411400			80923	1818;17643	56408	56503	89818;89819	89818					-0.01640304596230635
TRFSGQSYV	9	Unmodified	_TRFSGQSYV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.75830078125	2	522.759081	1043.50361	-0.44108	-0.00023058	-0.026315	-1.3757E-05	-0.4674	-0.00024434	522.7590362876288	41.446	0.9458	41.216	40.886	41.832	-0.23029					52	24	3	0	0	0	0.29609	3	3640	3631;3640;3652		76.17	20.665	1	5720600			80924	1818;17643	56408	56503	89820;89821;89822	89821					-0.01640304596230635
TRFTHNIRVI	10	Unmodified	_TRFTHNIRVI_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	419.577880859375	3	419.578923	1255.71494	-0.0023189	-9.7298E-07	-3.3028	-0.0013858	-3.3051	-0.0013868	419.57756794524124	21.322	1.1609	21.394	21.057	22.218	0.071487					69	23	4	0	0	0	1.1314	1	619	619		27.047	3.6694	1	820250			80925	3474	56409	56504	89823	89823					0.09730992165486896
TRGEQRVGR	9	Unmodified	_TRGEQRVGR_					0	0	0		ENST00000380834.6_1_2:25042774-25043173:+|nuORF	ENST00000380834.6_1_2:25042774-25043173:+|nuORF	ENST00000380834.6_1_2:25042774-25043173:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7972412109375	2	529.794321	1057.57409	-0.34147	-0.00018091	0.7222	0.00038262	0.38073	0.00020171	529.7958734271577	54.522	1.0142	54.371	54.051	55.065	-0.15036					110	28	6	0	0	0	0.29158	1	5963	5963		76.774	2.5191	1	8188000			80926	13323	56410	56505	89824	89824					0.047604135120991486
TRGGQPPL	8	Unmodified	_TRGGQPPL_					0	0	0			REV__ENST00000525616.1_1_19:50180537-50188241:+|nuORF	REV__ENST00000525616.1_1_19:50180537-50188241:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.55029296875	2	413.232502	824.450451	-0.2696	-0.00011141	1.2089	0.00049955	0.93929	0.00038815	413.2332585759536	29.234	0.36473	29.312	29.242	29.607	0.078346					14	8	2	0	0	0	0.027866	1	1733	1733		30.504	0	1	142060	+		80927	34418	56411	56506	89825	89825					0.031203624117438267
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.28497314453125	2	449.285069	896.555585	-0.33381	-0.00014998	0.20153	9.0543E-05	-0.13229	-5.9434E-05	449.28504697638544	34.952	1.1256	34.952	34.444	35.57	0					75	29	4	0	0	0	0.89627	1	2641	2641		51.335	1.3109	1	3082300			80928	3265	56412	56507	89826	89826					0.10316903608190842
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.2848815917969	2	449.285069	896.555585	-0.40917	-0.00018383	0.29832	0.00013403	-0.11085	-4.9801E-05	449.285071372506	34.764	1.1454	34.742	34.281	35.426	-0.021763					74	29	4	0	0	0	0.77775	1	2614	2614		60.972	5.4677	1	2969900			80929	3265	56412	56507	89827	89827					0.10316903608190842
TRGPVVRL	8	Unmodified	_TRGPVVRL_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.2850036621094	2	449.285069	896.555585	-0.53756	-0.00024152	0.47144	0.00021181	-0.066121	-2.9707E-05	449.28517003425094	34.829	1.0236	34.879	34.441	35.465	0.050255					63	26	3	0	0	0	0.68164	2	2594	2563;2594		68.787	7.8149	1	2745200			80930	3265	56412	56507	89828;89829	89829					0.10316903608190842
TRGRAVLVV	9	Unmodified	_TRGRAVLVV_					0	0	0			REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.81280517578125	2	485.811451	969.608348	-0.18183	-8.8337E-05	2.6982	0.0013108	2.5164	0.0012225	485.81265533177697	89.103	2.093	88.976	88.617	90.71	-0.12774					125	49	4	0	0	0	0.4752	1	10865	10865		60.972	0.67798	1	4180000	+		80931	25085	56413	56508	89830	89830					0.12232861670997863
TRGRSIPV	8	Unmodified	_TRGRSIPV_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.2667236328125	2	443.266876	884.519199	0.094753	4.2001E-05	0.13538	6.0008E-05	0.23013	0.00010201	443.2668579656422	85.931	1.078	85.736	85.386	86.464	-0.19507					68	24	4	0	0	0	1.0574	1	10419	10419		27.882	0	1	1006800			80932	3610	56414	56509	89831	89831					0.07232026711471917
TRGSDVVSL	9	Unmodified	_TRGSDVVSL_					0	0	0			REV__ENST00000395044.7_1_5:133308228-133308315:-|nuORF	REV__ENST00000395044.7_1_5:133308228-133308315:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.2535400390625	2	467.253631	932.49271	0.11535	5.39E-05	-0.28712	-0.00013416	-0.17177	-8.026E-05	467.25338580052164	34.064	1.1091	34.114	33.765	34.874	0.050255					79	27	5	0	0	0	0.29158	1	2459	2459		76.774	4.8967	1	3293900	+		80933	31685	56415	56510	89832	89832					0.023762930294765283
TRGYPKEGR	9	Unmodified	_TRGYPKEGR_					0	0	0		ENST00000553399.1_1_14:68282450-68282693:-|nuORF;ENST00000347230.8_2_14:68275974-68282693:-|nuORF	ENST00000553399.1_1_14:68282450-68282693:-|nuORF	ENST00000553399.1_1_14:68282450-68282693:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.3195190429688	2	532.285797	1062.55704	-0.80471	-0.00042834	-2.7174	-0.0014465	-3.5221	-0.0018748	532.2842738113401	93.564	0.25391	93.56	93.452	93.706	-0.0042038					9	5	2	0	0	0	0.024466	1	11860	11860		31.53	7.3271	1	117740			80934	12570	56416	56511	89833	89833					0.02826492906274325
TRGYQSSLFF	10	Unmodified	_TRGYQSSLFF_					0	0	0			REV__ENST00000466188.1_1_9:90272919-90283745:+|nuORF	REV__ENST00000466188.1_1_9:90272919-90283745:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.5555419921875	3	402.536501	1204.58767	0.76466	0.0003078	-4.2242	-0.0017004	-3.4595	-0.0013926	403.2016015522043	25.67	0.70069	25.499	24.997	25.698	-0.17078					32	16	3	0	0	0	0.03519	1	1254	1254		19.263	2.5453	1	102000	+		80935	33025	56417	56512	89834	89834					-0.006437734993596678
TRHLHRDGRH	10	Unmodified	_TRHLHRDGRH_					0	0	0			REV__ENST00000434316.6_1_13:114193706-114203864:+|nuORF	REV__ENST00000434316.6_1_13:114193706-114203864:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.21978759765625	3	428.897537	1283.67078	-0.15705	-6.736E-05	2.1159	0.00090749	1.9588	0.00084013	428.8981078343393	27.175	0.88967	27.007	26.68	27.57	-0.16816					44	20	3	0	0	0	0.03519	1	1535	1535		19.263	7.3303	1	379750	+		80936	32418	56418	56513	89835	89835					0.04029400791887383
TRHLLQRRLPH	11	Unmodified	_TRHLLQRRLPH_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2608642578125	3	476.288254	1425.84293	-0.42262	-0.00020129	-4.427	-0.0021085	-4.8496	-0.0023098	476.2861071885606	28.216	0.40057	27.971	27.801	28.202	-0.24524					18	9	3	0	0	0	0.024834	1	1618	1618		23.378	5.5448	1	613660			80937	9798	56419	56514	89836	89836					0.1470455247940663
TRHQHIRVQQR	11	Unmodified	_TRHQHIRVQQR_					0	0	0			REV__ENST00000545128.5_1_9:78505928-78547329:+|nuORF	REV__ENST00000545128.5_1_9:78505928-78547329:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7669677734375	3	486.943147	1457.80761	0.070088	3.4129E-05	1.246	0.00060674	1.3161	0.00064087	486.9437604581662	40.334	0.92159	40.334	39.771	40.692	0					67	25	3	0	0	0	0.024726	1	3485	3485		25.892	9.3619	1	797880	+		80938	34818	56420	56515	89837	89837					0.09701889951588782
TRHQHIRVQQR	11	Unmodified	_TRHQHIRVQQR_					0	0	0			REV__ENST00000545128.5_1_9:78505928-78547329:+|nuORF	REV__ENST00000545128.5_1_9:78505928-78547329:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	486.943147	1457.80761	-0.97748	-0.00047598	2.4874	0.0012112	1.51	0.00073527	486.94429902161755	40.555	0.73524	40.578	40.199	40.934	0.023006	0.12457	0.0014006	NaN	25.892	61	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	784980	+		80939	34818	56420	56515							0.09701889951588782
TRIATPWL	8	Unmodified	_TRIATPWL_					0	0	0		ENST00000602919.1_1_5:133562165-133562258:+|nuORF	ENST00000602919.1_1_5:133562165-133562258:+|nuORF	ENST00000602919.1_1_5:133562165-133562258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2781677246094	2	479.279452	956.544351	0.086784	4.1594E-05	-0.97562	-0.00046759	-0.88883	-0.000426	479.2793231244921	81.002	2.3435	81.002	79.447	81.791	0					113	56	3	0	0	0	1.0338	1	10031	10031		31.955	1.4512	1	1529300			80940	17537	56421	56516	89838	89838					0.0643408151404401
TRIATPWL	8	Unmodified	_TRIATPWL_					0	0	0		ENST00000602919.1_1_5:133562165-133562258:+|nuORF	ENST00000602919.1_1_5:133562165-133562258:+|nuORF	ENST00000602919.1_1_5:133562165-133562258:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2774658203125	2	479.279452	956.544351	-0.56358	-0.00027011	-3.3047	-0.0015839	-3.8683	-0.001854	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.95679	1	10355	10355		44.117	1.7207	1	4947400			80941	17537	56421	56516	89839	89839					0.0643408151404401
TRIAYLTSLL	10	Unmodified	_TRIAYLTSLL_					0	0	0		ENST00000512095.5_1_4:39217537-39276579:+|nuORF;ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENST00000512095.5_1_4:39217537-39276579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8425903320312	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	0.88896	1	10832	10832		54.776	3.5836	1	1877500			80942	6622	56422	56517	89840	89840					0.10690847091291289
TRIGKAVR	8	Unmodified	_TRIGKAVR_					0	0	0			REV__SCN10A|p.A1589V|1|0.19|ENSG00000185313|chr3:38698454-38698454|G/A|missense_variant	REV__SCN10A|p.A1589V|1|0.19|ENSG00000185313|chr3:38698454-38698454|G/A|missense_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	450.7904052734375	2	450.790518	899.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.191	1	19.995	19.495	20.495	-0.19577								0	0	0	0.81261	1	509	509		33.516	0	1		+		80943	37464	56423	56518	89841	89841					0.11268305982457605
TRIGKAVR	8	Unmodified	_TRIGKAVR_					0	0	0			REV__SCN10A|p.A1589V|1|0.19|ENSG00000185313|chr3:38698454-38698454|G/A|missense_variant	REV__SCN10A|p.A1589V|1|0.19|ENSG00000185313|chr3:38698454-38698454|G/A|missense_variant	MSMS	OPSCC_40_ClassI_Rep-3	6	450.7903137207031	2	450.790518	899.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.309	1	20.085	19.585	20.585	-0.22344								0	0	0	0.73703	1	505	505		38.806	4.6336	1		+		80944	37464	56423	56518	89842	89842					0.11268305982457605
TRIKAKSI	8	Unmodified	_TRIKAKSI_					0	0	0			REV__ENSG00000180914|ENST00000316793|OXTR	REV__ENSG00000180914|ENST00000316793|OXTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.78790283203125	2	458.800552	915.58655	-1.5491	-0.00071071	0.52524	0.00024098	-1.0238	-0.00046973	458.80090001102843	92.211	0.56886	92.067	91.878	92.447	-0.14356					15	13	2	0	0	0	0.027866	1	11299	11299		30.504	0	1	140780	+		80945	27372	56424	56519	89843	89843					0.12538056922414853
TRIKCFIVAL	10	Unmodified	_TRIKCFIVAL_					0	0	0			REV__ENST00000550937.5_1_12:69924683-69951618:+|nuORF	REV__ENST00000550937.5_1_12:69924683-69951618:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3533935546875	2	582.352094	1162.68964	0.23222	0.00013523	2.1104	0.001229	2.3426	0.0013642	582.3532009393155	102.38	1.4655	102.25	101.9	103.36	-0.12931					112	34	7	0	0	0	1.0616	1	12701	12701		37.812	7.4938	1	8525700	+		80946	34920	56425	56520	89844	89844					0.11479801318728278
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.8633422851562	2	548.863683	1095.71281	-0.25193	-0.00013827	0.17887	9.8175E-05	-0.073058	-4.0099E-05	548.8636329169153	36.602	0.99554	36.397	35.919	36.915	-0.20518					67	25	4	0	0	0	0.091713	2	2880	2880;2893		113.41	36.637	1	1584800			80947	3008	56426	56521	89845;89846	89845					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.8637084960938	2	548.863683	1095.71281	-0.11885	-6.523E-05	0.064198	3.5236E-05	-0.054648	-2.9994E-05	548.8635660017942	36.626	1.3221	36.41	35.68	37.002	-0.21661					79	34	4	0	0	0	0.1158	1	2885	2885		107.01	24.767	1	1589100			80948	3008	56426	56521	89847	89847					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.8633422851562	2	548.863683	1095.71281	1.3921	0.00076406	-1.5499	-0.00085067	-0.1578	-8.661E-05	548.862707602387	36.575	1.1915	36.376	35.742	36.934	-0.19829					78	30	4	0	0	0	0.14024	1	2855	2855		101.6	24.827	1	1684300			80949	3008	56426	56521	89848	89848					0.16878563427690096
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.863683	1095.71281	-1.1458	-0.00062887	0.86897	0.00047694	-0.27679	-0.00015192	548.8640056942144	36.443	1.1318	36.4	35.83	36.962	-0.042454	0.0045647	0.0012811	NaN	113.41	78	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1378500			80950	3008	56426	56521							0.16878563427690096
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.8443603515625	2	548.84549	1095.67643	-0.54527	-0.00029927	-0.15667	-8.5985E-05	-0.70193	-0.00038525	548.8453183569941	45.437	1.6043	45.338	44.431	46.036	-0.099449					122	43	4	0	0	0	0.082191	5	4292	4292;4303;4315;4327;4340		116.9	37.453	1	5330000			80951	1094	56427	56522	89849;89850;89851;89852;89853	89849					0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.84521484375	2	548.84549	1095.67643	-0.19716	-0.00010821	-0.54258	-0.00029779	-0.73973	-0.000406	548.8450873540853	45.605	1.8545	45.352	44.354	46.208	-0.25252					138	49	4	0	0	0	0.03849	4	4320	4309;4320;4343;4356		134.81	44.441	1	5389900			80952	1094	56427	56522	89854;89855;89856;89857	89855					0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.8460083007812	2	548.84549	1095.67643	-0.77116	-0.00042325	0.064039	3.5148E-05	-0.70712	-0.0003881	548.845442712348	45.56	1.669	45.358	44.336	46.005	-0.20226					121	45	4	0	0	0	0.03849	4	4309	4309;4320;4331;4345		134.81	41.721	1	5549300			80953	1094	56427	56522	89858;89859;89860;89861	89858					0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.84549	1095.67643	-0.69732	-0.00038272	-1.0302	-0.00056542	-1.7275	-0.00094815	548.8450378877644	45.405	1.3989	45.405	44.587	45.986	0	0.02587	-0.00075288	NaN	134.81	94	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2233900			80954	1094	56427	56522							0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	548.84549	1095.67643	-1.0371	-0.0005692	-0.43811	-0.00024046	-1.4752	-0.00080966	548.845306485719	45.542	1.269	45.391	44.52	45.789	-0.15113	0.012027	-0.00010294	NaN	134.81	87	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2599300			80955	1094	56427	56522							0.1324168653097786
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	548.84549	1095.67643	-0.73061	-0.00040099	-0.82149	-0.00045087	-1.5521	-0.00085186	548.8451423225649	45.387	1.3054	45.431	44.619	45.925	0.043877	0.051966	-0.00052377	NaN	134.81	89	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2305800			80956	1094	56427	56522							0.1324168653097786
TRIRELTE	8	Unmodified	_TRIRELTE_					0	0	0			REV__ENST00000341170.4_1_9:100389809-100395565:-|nuORF	REV__ENST00000341170.4_1_9:100389809-100395565:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2931213378906	2	509.288005	1016.56146	0.53993	0.00027498	3.1767	0.0016179	3.7167	0.0018928	509.28963854412467	50.904	0.68611	50.792	50.563	51.249	-0.11163					37	17	3	0	0	0	0.027866	1	5177	5177		51.193	6.8155	1	1141500	+		80957	30630	56428	56523	89862	89862					0.05383957329183886
TRIRLLDS	8	Unmodified	_TRIRLLDS_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2936096191406	2	487.293091	972.571629	-1.0283	-0.00050109	1.1383	0.0005547	0.11002	5.361E-05	487.2935230080693	90.04	1.2078	89.877	89.429	90.637	-0.16245					81	28	4	0	0	0	1.0574	1	11026	11026		26.693	4.733	1	2703700			80958	6248	56429	56524	89863	89863					0.08424565054417599
TRIWQTLN	8	Unmodified	_TRIWQTLN_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7897338867188	2	516.285266	1030.55598	-0.78603	-0.00040582	-0.65372	-0.00033751	-1.4398	-0.00074332	516.284323457478	52.173	0.63067	52.265	52.079	52.71	0.091938					27	15	3	0	0	0	0.027866	1	5520	5520		68.787	10.005	1	302400	+		80959	20017	56430	56525	89864	89864					0.04192278537379934
TRIYSHSL	8	Unmodified	_TRIYSHSL_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.77923583984375	2	488.764166	975.513779	2.1843	0.0010676	-2.0219	-0.00098825	0.16235	7.9353E-05	488.7627877117882	24.75	0.43743	24.569	24.374	24.811	-0.18089					15	9	2	0	0	0	0.027866	1	1061	1061		37.159	8.0096	1	67204			80960	6720	56431	56526	89865	89865					0.025043031289897044
TRKAAKRMR	9	Unmodified	_TRKAAKRMR_					0	0	0		ENSG00000197183|ENST00000621426|NOL4L;nc|ENSG00000197183|Q96MY1-2|NOL4L;nc|ENSG00000197183|Q96MY1|NOL4L	ENSG00000197183|ENST00000621426|NOL4L	ENSG00000197183|ENST00000621426|NOL4L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2874145507812	2	559.340384	1116.66621	0.59139	0.00033079	4.0102	0.0022431	4.6016	0.0025738	559.3422977346466	51.035	0.15027	50.923	50.823	50.973	-0.11163					5	3	2	0	0	0	0.024541	1	5226	5226		14.137	2.6261	1	66640			80961	9971	56432	56527	89866	89866					0.11254800324741154
TRKANILTN	9	Unmodified	_TRKANILTN_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.7949829101562	2	515.803823	1029.59309	1.8944	0.00097715	-0.83165	-0.00042897	1.0628	0.00054818	515.803351580392	23.799	0.38333	23.608	23.321	23.705	-0.19117					18	8	3	0	0	0	0.024466	1	957	957		31.53	0	1	192750			80962	7373	56433	56528	89867	89867					0.07947950083121214
TRKAVLVGDP	10	Unmodified	_TRKAVLVGDP_					0	0	0		ENST00000202967.4_1_12:120741738-120750342:+|nuORF	ENST00000202967.4_1_12:120741738-120750342:+|nuORF	ENST00000202967.4_1_12:120741738-120750342:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.3141479492188	2	528.314023	1054.61349	0.6396	0.00033791	0.17025	8.9944E-05	0.80984	0.00042785	528.3142680105974	97.405	1.0351	97.268	96.746	97.781	-0.1367					49	22	3	0	0	0	1.0781	1	12040	12040		35.618	2.8059	1	177890			80963	11131	56434	56529	89868	89868					0.08837120742941806
TRKGGAARAQ	10	Unmodified	_TRKGGAARAQ_					0	0	0		ENST00000447514.1_1_7:131011611-131012806:-|nuORF	ENST00000447514.1_1_7:131011611-131012806:-|nuORF	ENST00000447514.1_1_7:131011611-131012806:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7547912597656	2	508.291414	1014.56827	-0.30406	-0.00015455	-3.6892	-0.0018752	-3.9932	-0.0020297	508.2901407452615	29.057	0.34212	29.135	28.942	29.284	0.078344					11	8	2	0	0	0	0.03519	1	1693	1693		51.193	10.62	1	69068			80964	14469	56435	56530	89869	89869					0.06157315000405106
TRKKIGTQ	8	Unmodified	_TRKKIGTQ_					0	0	0		ENST00000573580.5_2_16:3493766-3529556:+|nuORF	ENST00000573580.5_2_16:3493766-3529556:+|nuORF	ENST00000573580.5_2_16:3493766-3529556:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.76129150390625	2	466.287808	930.561064	-0.13229	-6.1684E-05	4.0346	0.0018813	3.9023	0.0018196	466.2894602056614	45.29	0.4311	45.037	44.826	45.258	-0.25252					17	11	2	0	0	0	0.027866	1	4263	4263		27.882	0	1	221560			80965	17074	56436	56531	89870	89870					0.09300582399998802
TRKLTGPK	8	Unmodified	_TRKLTGPK_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.76861572265625	2	450.784902	899.55525	-0.2311	-0.00010417	-0.30494	-0.00013746	-0.53604	-0.00024164	450.78440360201745	27.799	0.45932	27.644	27.227	27.687	-0.15458					11	10	2	0	0	0	0.027866	1	1509	1509		14.137	0	1	47614			80966	5448	56437	56532	89871	89871					0.10145483888311446
TRKSSHWSLII	11	Unmodified	_TRKSSHWSLII_					0	0	0			REV__ENST00000501122.2_1_11:65192222-65192513:+|nuORF	REV__ENST00000501122.2_1_11:65192222-65192513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2420349121094	3	443.254216	1326.74082	-0.16974	-7.5238E-05	0.65828	0.00029179	0.48854	0.00021655	443.25450523149266	37.496	1.8175	37.528	36.918	38.736	0.032269					89	49	3	0	0	0	0.024777	1	3126	3126		42.338	12.787	1	341380	+		80967	33910	56438	56533	89872	89872					0.09051841617133505
TRLAIMVK	8	Unmodified	_TRLAIMVK_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.7613525390625	2	466.291505	930.568457	-0.64811	-0.00030221	-3.3248	-0.0015503	-3.9729	-0.0018525	466.289801310019	45.114	0.32617	45.015	44.828	45.154	-0.099449					15	8	2	0	0	0	0.027866	1	4236	4236		3.41	0	1	219150			80968	10172	56439	56534	89873	89873					0.10039598676053174
TRLDKQLR	8	Unmodified	_TRLDKQLR_					0	0	0			REV__nc|ENSG00000136717|O00499-9|BIN1	REV__nc|ENSG00000136717|O00499-9|BIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3114624023438	2	515.311815	1028.60908	1.1229	0.00057866	-2.0475	-0.0010551	-0.92454	-0.00047643	515.3108501398033	20.119	1.0239	19.919	19.653	20.676	-0.2001					53	20	5	0	0	0	0.50239	1	495	495		85.359	0	1	7938700	+		80969	23675	56440	56535	89874	89874					0.09591656320026232
TRLDLLVVF	9	Unmodified	_TRLDLLVVF_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3270874023438	2	538.329142	1074.64373	0.30756	0.00016557	-4.081	-0.0021969	-3.7735	-0.0020314	538.3268355651862	99.751	1.5457	99.615	99.129	100.68	-0.13526					148	43	7	0	0	0	0.80658	1	12328	12328		38.806	5.9937	1	21168000	+		80970	21562	56441	56536	89875	89875					0.10939479408125408
TRLEAPDAR	9	Unmodified	_TRLEAPDAR_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8157958984375	2	514.777805	1027.54106	-1.095	-0.00056367	3.0406	0.0015653	1.9457	0.0010016	514.7792762235487	60.639	0.85489	60.639	60.066	60.921	0					31	22	2	0	0	0	0.024292	1	6902	6902		58.782	21.623	1	643890	+		80971	19786	56442	56537	89876	89876					0.028387866693719843
TRLEFLNW	8	Unmodified	_TRLEFLNW_					0	0	0			REV__ENST00000563383.1_2_16:57406464-57416157:+|nuORF	REV__ENST00000563383.1_2_16:57406464-57416157:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3021240234375	2	539.787641	1077.56073	-0.63741	-0.00034407	0.68151	0.00036787	0.044103	2.3806E-05	540.2900538258326	56.928	0.23204	56.703	56.582	56.814	-0.22479					8	5	2	0	0	0	0.027866	1	6167	6167		51.335	10.557	1	95721	+		80972	35223	56443	56538	89877	89877					0.02505162680131434
TRLERQLK	8	Unmodified	_TRLERQLK_					0	0	0			REV__ENST00000496479.5_1_3:37095426-37095935:-|nuORF	REV__ENST00000496479.5_1_3:37095426-37095935:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	522.31964	1042.62473	0.5477	0.00028608	-0.38248	-0.00019978	0.16522	8.6299E-05	522.3191588877726	21.097	0.63905	20.902	20.582	21.221	-0.19577					26	12	3	0	0	0	0.027866	1	633	633		42.474	3.6683	1	130540	+		80973	20946	56444	56539	89878	89878					0.1051194283706991
TRLGLPSAILI	11	Unmodified	_TRLGLPSAILI_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.365966796875	2	577.368798	1152.72304	-0.32694	-0.00018876	-3.4688	-0.0020028	-3.7958	-0.0021916	577.3666744516432	101.1	0.73207	101.11	100.83	101.56	0.0090332					51	16	4	0	0	0	1.0075	1	12914	12914		35.152	3.6222	1	1370400	+		80974	22359	56445	56540	89879	89879					0.1527912636227029
TRLHHSHS	8	Unmodified	_TRLHHSHS_					0	0	0			REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7715759277344	2	487.749382	973.484211	-0.60451	-0.00029485	4.1872	0.0020423	3.5827	0.0017475	487.7510103919822	57.083	0.54303	56.916	56.637	57.18	-0.1672					21	14	2	0	0	0	0.027866	1	6181	6181		16.473	4.2663	1	272870	+		80975	31220	56446	56541	89880	89880					-0.003592160964785762
TRLHHSHS	8	Unmodified	_TRLHHSHS_					0	0	0			REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.749382	973.484211	0.31425	0.00015328	2.7415	0.0013372	3.0557	0.0014904	487.75046652483707	57.136	0.39035	56.934	56.71	57.1	-0.20208	-0.0048186	-0.00030228	NaN	10.866	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320710	+		80976	31220	56446	56541							-0.003592160964785762
TRLHHSHS	8	Unmodified	_TRLHHSHS_					0	0	0			REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	REV__ENST00000372894.7_1_20:43247101-43247245:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.749382	973.484211	0.1468	7.1603E-05	2.9437	0.0014358	3.0905	0.0015074	487.75057240051274	57.191	0.47114	56.966	56.738	57.209	-0.22479	0.027593	-0.00010505	NaN	10.866	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241160	+		80977	31220	56446	56541							-0.003592160964785762
TRLHKLLA	8	Unmodified	_TRLHKLLA_					0	0	0			REV__ENSG00000198816|ENST00000597229|ZNF358	REV__ENSG00000198816|ENST00000597229|ZNF358	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2610778808594	2	476.308544	950.602535	-0.33647	-0.00016026	-0.052311	-2.4916E-05	-0.38878	-0.00018518	476.3098810332648	28.093	0.3939	27.941	27.769	28.162	-0.15195					17	9	3	0	0	0	0.027866	1	1569	1569		23.042	8.3784	1	233260	+		80978	28487	56447	56542	89881	89881					0.12525763159317194
TRLILIGE	8	Unmodified	_TRLILIGE_					0	0	0		nc|ENSG00000095303|P23219-3|PTGS1;nc|ENSG00000095303|P23219-2|PTGS1;ENSG00000095303|ENST00000362012|PTGS1;nc|ENSG00000095303|P23219-6|PTGS1;nc|ENSG00000095303|P23219-5|PTGS1;nc|ENSG00000095303|P23219-4|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	nc|ENSG00000095303|P23219-3|PTGS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7514343261719	2	457.78711	913.559667	-1.2373	-0.00056641	2.0537	0.00094015	0.81641	0.00037374	457.78731604318875	60.549	0.44643	60.628	60.392	60.839	0.078888					19	11	2	0	0	0	0.027866	1	6890	6890		45.952	5.3793	1	109220			80979	2020	56448	56543	89882	89882					0.09942948311231703
TRLKDYFF	8	Unmodified	_TRLKDYFF_					0	0	0			REV__ENSG00000161956|ENST00000321337|SENP3	REV__ENSG00000161956|ENST00000321337|SENP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3117065429688	2	545.290017	1088.56548	-0.94229	-0.00051382	0.77689	0.00042363	-0.16541	-9.0195E-05	545.2902646372214	22.614	1.1141	22.614	21.965	23.079	0					38	23	2	0	0	0	0.027866	1	771	771		23.042	0	1	53595	+		80980	25410	56449	56544	89883	89883					0.024740468228856116
TRLKVMVL	8	Unmodified	_TRLKVMVL_					0	0	0			REV__ENSG00000187871|ENST00000340465|GFRAL	REV__ENSG00000187871|ENST00000340465|GFRAL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.29217529296875	2	480.307155	958.599758	-0.22435	-0.00010776	-1.0259	-0.00049275	-1.2503	-0.00060051	480.3054464463099	31.654	0.27762	31.502	31.379	31.657	-0.15231					11	6	2	0	0	0	0.027866	1	2093	2093		73.975	5.49	1	53778	+		80981	27988	56450	56545	89884	89884					0.11880171710163268
TRLLALLD	8	Unmodified	_TRLLALLD_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7510681152344	2	457.78711	913.559667	-0.55987	-0.0002563	0.50826	0.00023268	-0.051608	-2.3625E-05	457.786958621243	60.57	0.3661	60.57	60.401	60.768	0					15	9	2	0	0	0	0.027866	1	7005	7005		11.511	0	1	82227			80982	7346	56451	56546	89885	89885					0.09942948311231703
TRLLIAEFV	9	Unmodified	_TRLLIAEFV_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.3191528320312	2	531.321317	1060.62808	-0.18565	-9.8638E-05	-3.925	-0.0020854	-4.1106	-0.0021841	531.3190902066726	93.825	1.15	93.677	93.26	94.41	-0.14771					88	26	4	0	0	0	0.96906	1	11544	11544		26.693	2.1737	1	3704000	+		80983	24144	56452	56547	89886	89886					0.1001919289108173
TRLLKKIQ	8	Unmodified	_TRLLKKIQ_					0	0	0		ENST00000260777.14_3_10:118645880-118645988:-|nuORF	ENST00000260777.14_3_10:118645880-118645988:-|nuORF	ENST00000260777.14_3_10:118645880-118645988:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.290771484375	2	500.337301	998.66005	1.5927	0.00079691	-1.2943	-0.00064759	0.29844	0.00014932	500.3366136180463	23.995	0.26754	23.814	23.671	23.938	-0.18089					9	5	2	0	0	0	0.027866	1	979	979		55.504	21.332	1	36575			80984	11454	56453	56548	89887	89887					0.1606660536488107
TRLLLTKT	8	Unmodified	_TRLLLTKT_					0	0	0			REV__ENSG00000101353|ENST00000343811|MROH8	REV__ENSG00000101353|ENST00000343811|MROH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	473.7826232910156	2	473.30821	944.601866	1.408	0.00066641	-1.3361	-0.0006324	0.071873	3.4018E-05	473.30738941918133	17.637	0.59793	17.483	17.308	17.906	-0.15403					25	11	3	0	0	0	0.027866	1	194	194		17.365	3.5896	1	207490	+		80985	21225	56454	56549	89888	89888					0.12734923719619928
TRLLPSTL	8	Unmodified	_TRLLPSTL_					0	0	0			REV__ENST00000269095.8_2_17:41984902-41985106:-|nuORF	REV__ENST00000269095.8_2_17:41984902-41985106:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.2530212402344	2	450.779285	899.544017	-0.85051	-0.00038339	-2.6659	-0.0012017	-3.5164	-0.0015851	450.77767369137524	64.776	0.27067	64.513	64.379	64.65	-0.2626					9	6	2	0	0	0	0.027866	1	7620	7620		27.882	0	1	37874	+		80986	29786	56455	56550	89889	89889					0.09022661794188025
TRLLTKMTA	9	Unmodified	_TRLLTKMTA_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2774658203125	2	517.804977	1033.5954	1.1985	0.00062059	-3.2049	-0.0016595	-2.0064	-0.0010389	517.8028103592933	51.371	0.35495	51.19	51.023	51.378	-0.18071					11	8	2	0	0	0	0.024427	1	5251	5251		42.396	0	1	85999	+		80987	20653	56456	56551	89890	89890					0.07994662496594174
TRLLVFQM	8	Unmodified	_TRLLVFQM_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2552795410156	2	504.288963	1006.56337	-0.38693	-0.00019512	0.73699	0.00037166	0.35006	0.00017653	505.29246201218336	40.937	0.57225	40.802	40.488	41.06	-0.13553					34	14	4	0	0	0	0.027866	1	3584	3584		37.159	0	1	203690	+		80988	23768	56457	56552	89891	89891					0.0603529481344367
TRLLVLSYK	9	Unmodified	_TRLLVLSYK_					0	0	0		ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8413696289062	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	0.94809	1	12810	12810		29.15	0	1	11254000			80989	16152	56458	56553	89892	89892					0.12811168299458586
TRLLVLSYK	9	Unmodified	_TRLLVLSYK_					0	0	0		ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.842529296875	2	546.842416	1091.67028	-0.54263	-0.00029673	-3.6256	-0.0019826	-4.1682	-0.0022794	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	0.75397	1	12752	12752		42.396	0	1	11370000			80990	16152	56458	56553	89893	89893					0.12811168299458586
TRLLVLSYK	9	Unmodified	_TRLLVLSYK_					0	0	0		ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.840087890625	2	546.842416	1091.67028	-0.3389	-0.00018533	-3.9718	-0.002172	-4.3107	-0.0023573	546.8403310324193	99.835	1.3919	99.664	99.241	100.63	-0.17088					102	40	5	0	0	0	0.75397	1	12353	12353		42.396	1.618	1	9530200			80991	16152	56458	56553	89894	89894					0.12811168299458586
TRLNLSATSI	10	Unmodified	_TRLNLSATSI_					0	0	0			REV__nc|ENSG00000148082|Q92529-2|SHC3	REV__nc|ENSG00000148082|Q92529-2|SHC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3275756835938	2	538.308938	1074.60332	0.49164	0.00026465	3.1592	0.0017006	3.6508	0.0019653	538.3114927665791	99.707	0.39734	99.583	99.358	99.756	-0.12458					24	10	3	0	0	0	0.03519	1	12383	12383		41.427	18.384	1	190180	+		80992	24592	56459	56554	89895	89895					0.06900513017717458
TRLPRLSWLP	10	Unmodified	_TRLPRLSWLP_					0	0	0		ENST00000561241.1_1_15:63340374-63341172:-|nuORF	ENST00000561241.1_1_15:63340374-63341172:-|nuORF	ENST00000561241.1_1_15:63340374-63341172:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8692016601562	2	619.87204	1237.72953	0.0094928	5.8843E-06	-4.2055	-0.0026069	-4.196	-0.002601	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	1.0122	1	11999	11999		44.377	1.5129	1	4373200			80993	16820	56460	56555	89896	89896					0.1201706431365892
TRLPRLSWLP	10	Unmodified	_TRLPRLSWLP_					0	0	0		ENST00000561241.1_1_15:63340374-63341172:-|nuORF	ENST00000561241.1_1_15:63340374-63341172:-|nuORF	ENST00000561241.1_1_15:63340374-63341172:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8699340820312	2	619.87204	1237.72953	-0.13269	-8.2249E-05	-4.0649	-0.0025197	-4.1976	-0.002602	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0122	1	11766	11766		44.377	5.1244	1	4730400			80994	16820	56460	56555	89897	89897					0.1201706431365892
TRLPRLWPLMA	11	Unmodified	_TRLPRLWPLMA_					0	0	0		ENST00000587275.1_1_19:56173925-56175041:+|nuORF	ENST00000587275.1_1_19:56173925-56175041:+|nuORF	ENST00000587275.1_1_19:56173925-56175041:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	451.9325256347656	3	451.932309	1352.7751	0.13666	6.176E-05	0.77363	0.00034963	0.91028	0.00041139	451.9325494046975	96.949	2.203	96.949	95.778	97.981	0					146	50	4	0	0	0	1.0563	1	12382	12382		23.378	0.81632	1	652500			80995	17266	56461	56556	89898	89898					0.112819665043844
TRLRAVSP	8	Unmodified	_TRLRAVSP_					0	0	0			REV__ENST00000035307.6_1_7:150930442-150930622:+|nuORF	REV__ENST00000035307.6_1_7:150930442-150930622:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.27447509765625	2	450.274701	898.534849	-0.17068	-7.6855E-05	-0.93719	-0.00042199	-1.1079	-0.00049885	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	0.99672	1	11759	11759		37.812	0.65241	1	67707000	+		80996	29263	56462	56557	89899	89899					0.08152313228515595
TRLRHPRL	8	Unmodified	_TRLRHPRL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000549486.1_1_12:100685283-100685439:+|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.8270874023438	2	524.827966	1047.64138	-0.67594	-0.00035475	-1.2748	-0.00066905	-1.9507	-0.0010238	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	1.0239	1	12536	12536		33.516	0	1	14120000			80997	4971	56463	56558	89900	89900					0.1194648851369493
TRLRHPRL	8	Unmodified	_TRLRHPRL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000549486.1_1_12:100685283-100685439:+|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.8267822265625	2	524.827966	1047.64138	0.15236	7.9965E-05	-2.0921	-0.001098	-1.9397	-0.001018	524.8267476679999	97.913	2.4605	97.923	97.283	99.743	0.010231					170	56	6	0	0	0	1.0239	1	12466	12466		33.516	0	1	13084000			80998	4971	56463	56558	89901	89901					0.1194648851369493
TRLRHPRL	8	Unmodified	_TRLRHPRL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000549486.1_1_12:100685283-100685439:+|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.8272094726562	2	524.827966	1047.64138	-0.04084	-2.1434E-05	-2.3257	-0.0012206	-2.3665	-0.001242	524.8266178770541	98.118	1.9254	97.953	97.397	99.322	-0.1652					155	45	5	0	0	0	1.0239	1	12108	12108		33.516	0	1	11527000			80999	4971	56463	56558	89902	89902					0.1194648851369493
TRLRWWQPF	9	Unmodified	_TRLRWWQPF_					0	0	0		RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant;nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	RELN|p.G3296Wfs*15|1|0.47|ENSG00000189056|chr7:103486294-103486295|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7373046875	3	430.568247	1288.68291	0.27504	0.00011842	4.4592	0.00192	4.7342	0.0020384	430.57002725977463	39.706	0.28498	39.706	39.594	39.879	0					9	7	2	0	0	0	0.024541	1	3463	3463		8.6937	4.8503	1	67269			81000	9783	56464	56559	89903	89903					0.05011624482335719
TRLVPRGG	8	Unmodified	_TRLVPRGG_					0	0	0		ENST00000218104.5_1_X:152990328-152990616:+|nuORF	ENST00000218104.5_1_X:152990328-152990616:+|nuORF	ENST00000218104.5_1_X:152990328-152990616:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.261962890625	2	428.261594	854.508634	0.10911	4.6729E-05	0.34496	0.00014773	0.45407	0.00019446	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0574	1	11454	11454		25.45	6.0902	1	88816000			81001	11165	56465	56560	89904	89904					0.07556044057048439
TRLVPRGG	8	Unmodified	_TRLVPRGG_					0	0	0		ENST00000218104.5_1_X:152990328-152990616:+|nuORF	ENST00000218104.5_1_X:152990328-152990616:+|nuORF	ENST00000218104.5_1_X:152990328-152990616:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.26202392578125	2	428.261594	854.508634	-0.55429	-0.00023738	0.94817	0.00040607	0.39388	0.00016869	428.26208671641444	90.159	2.3879	90.004	89.522	91.91	-0.1552					211	56	6	0	0	0	1.0239	1	11035	11035		33.516	0	1	83817000			81002	11165	56465	56560	89905	89905					0.07556044057048439
TRLVPRGG	8	Unmodified	_TRLVPRGG_					0	0	0		ENST00000218104.5_1_X:152990328-152990616:+|nuORF	ENST00000218104.5_1_X:152990328-152990616:+|nuORF	ENST00000218104.5_1_X:152990328-152990616:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.26202392578125	2	428.261594	854.508634	-0.27209	-0.00011653	0.66798	0.00028607	0.39589	0.00016955	428.2619694709996	90.179	2.1255	90.054	89.502	91.628	-0.12512					198	50	6	0	0	0	1.0574	1	11061	11061		25.45	0	1	68116000			81003	11165	56465	56560	89906	89906					0.07556044057048439
TRLVSVIVYG	10	Unmodified	_TRLVSVIVYG_					0	0	0			REV__ENST00000265734.8_1_7:92462770-92462977:-|nuORF	REV__ENST00000265734.8_1_7:92462770-92462977:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.830078125	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.118	1	10986	10986		30.318	1.1477	1	5986700	+		81004	29745	56466	56561	89907	89907					0.10094577919812764
TRLWVEID	8	Unmodified	_TRLWVEID_					0	0	0			REV__nc|ENSG00000175662|Q6ZVM7-5|TOM1L2	REV__nc|ENSG00000175662|Q6ZVM7-5|TOM1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3135375976562	2	516.279649	1030.54475	0.34503	0.00017813	3.1145	0.001608	3.4596	0.0017861	516.2806333742209	88.01	0.96663	87.876	87.391	88.357	-0.13383					37	23	3	0	0	0	0.027866	1	10732	10732		68.787	10.005	1	209690	+		81005	36961	56467	56562	89908	89908					0.030694564432451443
TRLWVEID	8	Unmodified	_TRLWVEID_					0	0	0			REV__nc|ENSG00000175662|Q6ZVM7-5|TOM1L2	REV__nc|ENSG00000175662|Q6ZVM7-5|TOM1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3131713867188	2	516.279649	1030.54475	0.12097	6.2452E-05	3.847	0.0019861	3.968	0.0020486	516.2807074075744	88.068	1.0248	87.93	87.667	88.692	-0.13744					43	24	3	0	0	0	0.027866	1	10753	10753		74.255	15.473	1	220830	+		81006	36961	56467	56562	89909	89909					0.030694564432451443
TRLYGFTV	8	Unmodified	_TRLYGFTV_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.74566650390625	2	478.763635	955.512717	0.36023	0.00017246	0.8399	0.00040211	1.2001	0.00057458	478.7634156204655	53.179	0.82932	53.179	52.789	53.618	0					49	22	3	0	0	0	0.027866	1	5699	5699		25.45	13.243	1	2252100			81007	6801	56468	56563	89910	89910					0.033180887601020004
TRMVIAGLF	9	Unmodified	_TRMVIAGLF_					0	0	0		ENST00000369982.4_1_X:153238261-153247514:+|nuORF	ENST00000369982.4_1_X:153238261-153247514:+|nuORF	ENST00000369982.4_1_X:153238261-153247514:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.27392578125	2	504.288963	1006.56337	-0.4071	-0.00020529	1.9697	0.0009933	1.5626	0.000788	504.2899989339106	26.913	0.17261	26.745	26.594	26.766	-0.16816					5	3	2	0	0	0	0.024263	1	1437	1437		51.335	1.3109	1	52565			81008	12944	56469	56564	89911	89911					0.06035294813455039
TRMVSIVVAVF	11	Unmodified	_TRMVSIVVAVF_					0	0	0		nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3539428710938	2	611.354834	1220.69511	-0.5279	-0.00032273	2.5058	0.0015319	1.9779	0.0012092	611.3562554984684	92.326	2.2035	92.318	91.16	93.364	-0.0082932					149	52	4	0	0	0	1.018	1	11700	11700		32.812	2.4947	1	3964400			81009	8987	56470	56565	89912	89912					0.09359480110538243
TRMVSIVVAVF	11	Unmodified	_TRMVSIVVAVF_					0	0	0		nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.355712890625	2	611.354834	1220.69511	-0.35919	-0.00021959	2.1332	0.0013041	1.774	0.0010846	611.3559902690897	92.567	2.8634	92.445	90.59	93.453	-0.12241					191	67	5	0	0	0	1.018	1	11416	11416		32.812	0	1	4932800			81010	8987	56470	56565	89913	89913					0.09359480110538243
TRMVSIVVAVF	11	Unmodified	_TRMVSIVVAVF_					0	0	0		nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3551025390625	2	611.354834	1220.69511	-0.19635	-0.00012004	1.9932	0.0012186	1.7969	0.0010985	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	0.98904	2	11379	11379;11427		39.253	5.3312	1	5237500			81011	8987	56470	56565	89914;89915	89914					0.09359480110538243
TRNPILPSPPP	11	Unmodified	_TRNPILPSPPP_					0	0	0			REV__nc|ENSG00000106078|O75128-5|COBL	REV__nc|ENSG00000106078|O75128-5|COBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.2640991210938	2	594.840405	1187.66626	-0.46012	-0.0002737	-0.53416	-0.00031774	-0.99429	-0.00059144	594.8397114582428	47.313	0.32991	47.044	46.908	47.238	-0.26939					16	8	3	0	0	0	0.024727	1	4587	4587		24.519	3.5723	1	118160	+		81012	21594	56471	56566	89916	89916					0.07993078805748155
TRPEEKLD	8	Unmodified	_TRPEEKLD_					0	0	0			REV__ENSG00000133812|ENST00000256190|SBF2	REV__ENSG00000133812|ENST00000256190|SBF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7869567871094	2	494.258914	986.503274	0.05049	2.4955E-05	4.0776	0.0020154	4.1281	0.0020403	494.26083183982627	19.289	0.54503	19.128	18.935	19.48	-0.16079					20	10	3	0	0	0	0.027866	1	424	424		49.442	0	1	75012	+		81013	23398	56472	56567	89917	89917					0.009482756838906425
TRPGVCGVT	9	Unmodified	_TRPGVCGVT_					0	0	0			REV__ENSG00000069764|ENST00000438167|PLA2G10	REV__ENSG00000069764|ENST00000438167|PLA2G10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2686767578125	2	445.231645	888.448736	-0.5541	-0.0002467	1.8978	0.00084494	1.3437	0.00059824	445.2323575176666	28.737	0.47309	28.568	28.38	28.854	-0.16897					13	10	2	0	0	0	0.02435	1	1703	1703		26.693	0	1	57383	+		81014	20407	56473	56568	89918	89918					4.985331509033131E-05
TRPLLSVPPI	10	Unmodified	_TRPLLSVPPI_					0	0	0			REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.8084106445312	2	546.842416	1091.67028	-0.20534	-0.00011229	-3.5917	-0.0019641	-3.797	-0.0020764	546.8399140728435	54.146	0.31991	54.244	54.041	54.361	0.098015					14	8	2	0	0	0	0.03519	1	5809	5809		34.173	14.176	1	208450	+		81015	35315	56474	56569	89919	89919					0.12811168299458586
TRPLRHLD	8	Unmodified	_TRPLRHLD_					0	0	0			REV__ENST00000313432.5_1_12:110785777-110785828:+|nuORF	REV__ENST00000313432.5_1_12:110785777-110785828:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.30804443359375	2	504.290882	1006.56721	-0.02691	-1.3571E-05	2.6009	0.0013116	2.574	0.001298	504.29197878248425	65.396	1.0089	65.433	65.081	66.089	0.037376					82	27	4	0	0	0	0.027866	1	7629	7629		40.778	8.8233	1	7438800	+		81016	30232	56475	56570	89920	89920					0.06419100631501351
TRPNKILV	8	Unmodified	_TRPNKILV_					0	0	0			REV__ENSG00000181666|ENST00000392153|ZNF875	REV__ENSG00000181666|ENST00000392153|ZNF875	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7718811035156	2	470.800552	939.58655	-0.079491	-3.7424E-05	-0.62011	-0.00029195	-0.6996	-0.00032937	470.80020673823725	38.709	0.30047	38.61	38.437	38.737	-0.098755					10	7	2	0	0	0	0.027866	1	3257	3257		44.531	16.649	1	71343	+		81017	27417	56476	56571	89921	89921					0.11434056922416858
TRPSCVLLA	9	Unmodified	_TRPSCVLLA_					0	0	0			REV__ENST00000469390.5_1_1:156876157-156877908:+|nuORF	REV__ENST00000469390.5_1_1:156876157-156877908:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2923889160156	2	480.27077	958.526987	-0.67156	-0.00032253	-3.4924	-0.0016773	-4.164	-0.0019998	480.2690172898288	65.036	0.14603	65.036	64.909	65.055	0					5	3	2	0	0	0	0.024517	1	7670	7670		7.6903	0	1	67808	+		81018	30580	56477	56572	89922	89922					0.04606417916727423
TRPTPRSPA	9	Unmodified	_TRPTPRSPA_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.6992492675781	2	491.775065	981.535577	-1.7873	-0.00087896	1.4434	0.00070984	-0.34391	-0.00016913	491.77563213887385	29.062	0.38989	28.817	28.534	28.924	-0.24524					14	8	2	0	0	0	0.024381	1	1727	1727		45.952	1.8352	1	83754			81019	18447	56478	56573	89923	89923					0.04407107877557337
TRQIVKKP	8	Unmodified	_TRQIVKKP_					0	0	0		nc|ENSG00000147655|Q6UXX9-2|RSPO2;nc|ENSG00000147655|Q6UXX9-3|RSPO2;ENSG00000147655|ENST00000276659|RSPO2	nc|ENSG00000147655|Q6UXX9-2|RSPO2	nc|ENSG00000147655|Q6UXX9-2|RSPO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2715759277344	2	485.313826	968.613099	-0.02411	-1.1701E-05	-0.052181	-2.5324E-05	-0.076291	-3.7025E-05	485.31379150322385	32.649	0.6041	32.491	32.163	32.767	-0.15772					23	14	2	0	0	0	0.027866	1	2277	2277		7.6903	0	1	376460			81020	5987	56479	56574	89924	89924					0.12753745813756723
TRQLYGGDLL	10	Unmodified	_TRQLYGGDLL_					0	0	0			REV__ENSG00000130363|ENST00000367069|RSPH3	REV__ENSG00000130363|ENST00000367069|RSPH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.3110961914062	2	568.308938	1134.60332	0.87683	0.00049831	-1.3539	-0.00076943	-0.47706	-0.00027112	568.3081552585587	58.919	0.65251	58.732	58.424	59.076	-0.18705					47	17	4	0	0	0	0.40067	1	6662	6662		98.629	4.623	1	2887000	+		81021	23107	56480	56575	89925	89925					0.04140513017705416
TRQLYGGDLL	10	Unmodified	_TRQLYGGDLL_					0	0	0			REV__ENSG00000130363|ENST00000367069|RSPH3	REV__ENSG00000130363|ENST00000367069|RSPH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	568.308938	1134.60332	-0.069209	-3.9332E-05	-0.34745	-0.00019746	-0.41666	-0.00023679	568.3087015461214	58.7	0.65479	58.7	58.38	59.035	0	0.019559	0.00027414	NaN	98.629	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2562500	+		81022	23107	56480	56575							0.04140513017705416
TRQLYGGDLL	10	Unmodified	_TRQLYGGDLL_					0	0	0			REV__ENSG00000130363|ENST00000367069|RSPH3	REV__ENSG00000130363|ENST00000367069|RSPH3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	568.308938	1134.60332	0.87683	0.00049831	-1.3539	-0.00076943	-0.47706	-0.00027112	568.3081552585587	58.919	0.65251	58.732	58.424	59.076	-0.18705	0.052016	-0.00086979	NaN	98.629	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2887000	+		81023	23107	56480	56575							0.04140513017705416
TRQLYGGDLL	10	Unmodified	_TRQLYGGDLL_					0	0	0			REV__ENSG00000130363|ENST00000367069|RSPH3	REV__ENSG00000130363|ENST00000367069|RSPH3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	568.308938	1134.60332	-0.31244	-0.00017757	-0.071094	-4.0403E-05	-0.38354	-0.00021797	568.3089028580903	58.517	0.80801	58.609	58.297	59.105	0.091217	-0.071575	0.00058826	NaN	98.629	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2752900	+		81024	23107	56480	56575							0.04140513017705416
TRQNKQDF	8	Unmodified	_TRQNKQDF_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7504272460938	2	518.762155	1035.50976	-0.52146	-0.00027051	0.47347	0.00024562	-0.047981	-2.4891E-05	518.7625078231538	23.769	0.39705	23.845	23.604	24.001	0.076241					14	8	2	0	0	0	0.027866	1	926	926		38.806	15.764	1	72090	+		81025	21134	56481	56576	89926	89926					-0.006577863647407867
TRQNKQDF	8	Unmodified	_TRQNKQDF_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.762155	1035.50976	-0.9586	-0.00049729	1.6894	0.00087642	0.73084	0.00037913	518.7631377088156	23.909	0.38627	23.862	23.614	24	-0.047146	0.008463	0.00071166	NaN	38.806	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59919	+		81026	21134	56481	56576							-0.006577863647407867
TRQRGDFPG	9	Unmodified	_TRQRGDFPG_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.2567138671875	2	517.262322	1032.51009	-0.7793	-0.0004031	-1.2379	-0.00064032	-2.0172	-0.0010434	517.2619733784862	24.363	0.87077	24.363	23.737	24.608	0					27	19	2	0	0	0	0.024436	1	1052	1052		30.504	2.6214	1	85380			81027	2702	56482	56577	89927	89927					-0.004863666448500226
TRQRTHNKW	9	Unmodified	_TRQRTHNKW_					0	0	0			REV__ENST00000328663.8_1_5:68662352-68665530:-|nuORF	REV__ENST00000328663.8_1_5:68662352-68665530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.18304443359375	3	409.554889	1225.64284	-0.33025	-0.00013525	-3.2844	-0.0013451	-3.6146	-0.0014804	409.55413306784044	25.37	0.37996	25.144	24.931	25.311	-0.22683					12	8	2	0	0	0	0.024359	1	1180	1180		56.434	34.358	1	50937	+		81028	30433	56483	56578	89928	89928					0.039040778117851005
TRQSEVALPC	10	Unmodified	_TRQSEVALPC_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.79833984375	2	552.279323	1102.54409	-0.11761	-6.4951E-05	2.6446	0.0014606	2.527	0.0013956	552.2806511089722	18.231	0.49173	18.099	17.86	18.352	-0.13147					15	9	2	0	0	0	0.03519	1	267	267		58.23	3.4536	1	66874			81029	1051	56484	56579	89929	89929					-0.0030770626813136914
TRRARRCAHG	10	Unmodified	_TRRARRCAHG_					0	0	0		ENST00000507961.1_1_4:110650834-110651032:-|nuORF	ENST00000507961.1_1_4:110650834-110651032:-|nuORF	ENST00000507961.1_1_4:110650834-110651032:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	591.8094482421875	2	592.320514	1182.62647	-1.1714	-0.00069386	-1.4077	-0.0008338	-2.5791	-0.0015277	592.820387138161	41.815	0.43454	41.683	41.455	41.889	-0.1322					26	11	4	0	0	0	0.03519	1	3773	3773		23.042	1.0826	1	305050			81030	15775	56485	56580	89930	89930					0.042466733740411655
TRRASQGLLS	10	Unmodified	_TRRASQGLLS_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.8162231445312	2	544.812179	1087.60981	3.9916	0.0021747	2.6303	0.001433	6.6219	0.0036077	544.8136915403146	17.899	0.66283	17.96	17.786	18.449	0.06036					18	14	2	0	0	0	1.1117	1	229	229		16.717	0.24424	1	78060			81031	1685	56486	56581	89931	89931					0.06950450969088706
TRREPRARSSL	11	Unmodified	_TRREPRARSSL_					0	0	0			REV__ENST00000457010.6_2_16:31470184-31470298:+|nuORF	REV__ENST00000457010.6_2_16:31470184-31470298:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.29205322265625	3	443.588369	1327.74328	0.10966	4.8644E-05	0.48899	0.00021691	0.59865	0.00026556	443.58861404742015	37.364	1.1103	37.364	36.927	38.037	0					55	30	2	0	0	0	0.024739	1	3014	3014		35.178	6.6015	1	264680	+		81032	32802	56487	56582	89932	89932					0.09251690074779617
TRRGESGE	8	Unmodified	_TRRGESGE_					0	0	0			REV__ENST00000531187.5_1_11:24518651-24912476:+|nuORF	REV__ENST00000531187.5_1_11:24518651-24912476:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.745849609375	2	446.21758	890.420607	2.2228	0.00099185	3.4285	0.0015299	5.6513	0.0025217	446.21913829343714	24.574	0.69513	24.393	23.983	24.678	-0.18089					31	15	3	0	0	0	0.027866	1	1095	1095		32.812	0	1	210800	+		81033	32680	56488	56583	89933	89933					-0.028986213242433223
TRRGLVTP	8	Unmodified	_TRRGLVTP_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2742004394531	2	450.274701	898.534849	-0.17068	-7.6855E-05	-0.93719	-0.00042199	-1.1079	-0.00049885	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	1.043	1	11773	11773		30.504	0	1	67707000			81034	2727	56489	56584	89934	89934					0.08152313228504227
TRRGRTPPPR	10	Unmodified	_TRRGRTPPPR_					0	0	0			REV__ENST00000586582.5_1_19:4543214-4543517:-|nuORF	REV__ENST00000586582.5_1_19:4543214-4543517:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8565673828125	2	597.352337	1192.69012	-0.1792	-0.00010705	3.007	0.0017962	2.8278	0.0016892	597.3535838614963	103.88	1.0548	103.75	103.23	104.29	-0.126					70	26	4	0	0	0	1.1286	1	12907	12907		25.574	2.0514	1	669990	+		81035	35603	56490	56585	89935	89935					0.10148357082766779
TRRHGRID	8	Unmodified	_TRRHGRID_					0	0	0			REV__ENSG00000102910|ENST00000285737|LONP2	REV__ENSG00000102910|ENST00000285737|LONP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	505.3233947753906	2	505.783756	1009.55296	-0.087735	-4.4375E-05	-0.94128	-0.00047609	-1.029	-0.00052046	505.78316990957	79.811	0.62929	79.661	79.236	79.866	-0.15051					22	14	2	0	0	0	0.027866	1	9486	9486		64.207	7.4862	1	140070	+		81036	21340	56491	56586	89936	89936					0.04856448203213404
TRRHQILIAS	10	Unmodified	_TRRHQILIAS_					0	0	0			REV__ENSG00000186496|ENST00000589332|ZNF396	REV__ENSG00000186496|ENST00000589332|ZNF396	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.855712890625	2	597.856921	1193.69929	-0.21005	-0.00012558	-1.1569	-0.00069164	-1.3669	-0.00081722	597.8560735026185	92.71	3.3637	92.568	91.314	94.678	-0.14131					288	78	5	0	0	0	1.0992	1	11347	11347		32.812	1.2826	1	5598500	+		81037	27861	56492	56587	89937	89937					0.11018705648461946
TRRKIIGG	8	Unmodified	_TRRKIIGG_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2745056152344	2	450.790518	899.566484	-0.13845	-6.2412E-05	3.1736	0.0014306	3.0352	0.0013682	450.7917903653745	91.528	0.80269	91.515	91.238	92.041	-0.012383					35	18	3	0	0	0	0.027866	1	11626	11626		18.324	0	1	392050	+		81038	27992	56493	56588	89938	89938					0.11268305982480342
TRRKKSQF	8	Unmodified	_TRRKKSQF_					0	0	0			REV__UBR7|p.R416T|1|0.18|ENSG00000012963|chr14:93227004-93227004|G/C|missense_variant	REV__UBR7|p.R416T|1|0.18|ENSG00000012963|chr14:93227004-93227004|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2573852539062	2	525.811982	1049.60941	-0.7458	-0.00039215	2.1496	0.0011303	1.4038	0.00073812	525.8126330503902	45.767	0.43067	45.565	45.425	45.855	-0.20226					19	11	2	0	0	0	0.027866	1	4385	4385		29.15	9.7896	1	148770	+		81039	37754	56494	56589	89939	89939					0.08659076039884894
TRRKQRLPV	9	Unmodified	_TRRKQRLPV_					0	0	0		ENST00000308086.2_1_12:72057485-72057791:+|nuORF	ENST00000308086.2_1_12:72057485-72057791:+|nuORF	ENST00000308086.2_1_12:72057485-72057791:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	577.3658447265625	2	577.367456	1152.72036	-1.0688	-0.00061712	-0.58714	-0.000339	-1.656	-0.00095611	577.3670156537873	101.16	0.99826	101.16	100.82	101.82	0					57	22	4	0	0	0	0.98128	1	12969	12969		24.203	0	1	1213500			81040	12023	56495	56590	89940	89940					0.15010715747962422
TRRKVLSR	8	Unmodified	_TRRKVLSR_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;ENST00000552221.1_1_12:108941677-108954930:-|nuORF;nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-3|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7818603515625	2	508.327799	1014.64105	-0.083783	-4.2589E-05	2.6312	0.0013375	2.5474	0.0012949	508.32892370891636	42.057	0.73732	41.934	41.68	42.417	-0.12299					38	19	3	0	0	0	0.027866	1	3726	3726		27.882	7.8855	1	587190			81041	1572	56496	56591	89941	89941					0.1343106879384095
TRRLDIRAPL	10	Unmodified	_TRRLDIRAPL_					0	0	0		LRP5-CLPB|1|fusion;LRP5-CLPB|2|fusion;ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	LRP5-CLPB|1|fusion	LRP5-CLPB|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	605.8719482421875	2	605.872571	1209.73059	-0.60046	-0.0003638	-0.31946	-0.00019355	-0.91992	-0.00055735	605.8721410970385	98.62	1.0824	98.616	98.307	99.389	-0.0038834					72	24	4	0	0	0	1.1286	1	12552	12552		25.574	6.4705	1	1075200			81042	17926	56497	56592	89942	89942					0.13411278682542616
TRRLRSFRYFK	11	Unmodified	_TRRLRSFRYFK_					0	0	0		KIF16B|p.Q697Pfs*51|1|0.06|ENSG00000089177|chr20:16379900-16379912|GTCTCTTCTTCTT/-|frameshift_variant	KIF16B|p.Q697Pfs*51|1|0.06|ENSG00000089177|chr20:16379900-16379912|GTCTCTTCTTCTT/-|frameshift_variant	KIF16B|p.Q697Pfs*51|1|0.06|ENSG00000089177|chr20:16379900-16379912|GTCTCTTCTTCTT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.6335754394531	3	510.631909	1528.8739	0.11702	5.9755E-05	4.2468	0.0021685	4.3638	0.0022283	510.6339323208207	102.13	1.4065	101.96	101.05	102.46	-0.17178					85	32	3	0	0	0	1.1077	1	12695	12695		9.2118	2.5522	1	181380			81043	17797	56498	56593	89943	89943					0.13061705793620604
TRRMETLQSRA	11	Unmodified	_TRRMETLQSRA_					0	0	0			REV__ENSG00000173908|ENST00000306658|KRT28	REV__ENSG00000173908|ENST00000306658|KRT28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2068786621094	3	450.241982	1347.70412	-0.4922	-0.00022161	1.3701	0.00061686	0.87787	0.00039525	450.2426240962477	22.798	0.27723	22.613	22.507	22.784	-0.18539					7	5	2	0	0	0	0.02473	1	822	822		29.245	14.466	1	13850	+	+	81044	19599	56499	56594	89944	89944					0.044172217289315086
TRRPGHKKI	9	Unmodified	_TRRPGHKKI_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3328247070312	2	546.841074	1091.66759	-0.54263	-0.00029673	-1.1703	-0.00063995	-1.7129	-0.00093669	546.8405031906269	99.579	1.4015	99.589	99.179	100.58	0.010231					100	34	6	0	0	0	0.62163	1	12666	12666		51.335	5.3632	1	11370000	+		81045	36745	56500	56595	89945	89945					0.12542757685173456
TRRPGHKKI	9	Unmodified	_TRRPGHKKI_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8404541015625	2	546.841074	1091.66759	0.67566	0.00036948	-2.4362	-0.0013322	-1.7605	-0.00096274	546.839812365238	99.747	1.3753	99.622	99.203	100.58	-0.12458					81	40	3	0	0	0	0.85329	2	12394	12394;12426		35.618	6.4687	1	9262700	+		81046	36745	56500	56595	89946;89947	89946					0.12542757685173456
TRRPVSSN	8	Unmodified	_TRRPVSSN_					0	0	0			REV__ENSG00000112312|ENST00000230056|GMNN	REV__ENSG00000112312|ENST00000230056|GMNN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.7873840332031	2	458.75159	915.488627	0.20993	9.6306E-05	-0.2198	-0.00010083	-0.0098678	-4.5269E-06	458.7518536621815	92.412	0.19943	92.271	92.131	92.331	-0.14131					5	4	2	0	0	0	0.027866	1	11322	11322		49.442	20.292	1	58918	+		81047	21994	56501	56596	89948	89948					0.027502483264242983
TRRPWKKIL	9	Unmodified	_TRRPWKKIL_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.3794555664062	2	599.382574	1196.7506	-0.67183	-0.00040268	-3.6133	-0.0021657	-4.2851	-0.0025684	599.3803918245654	102.23	0.72807	102.24	101.98	102.71	0.0073471					50	16	4	0	0	0	0.85329	2	13041	13041;13064		35.618	7.5368	1	866470			81048	2225	56502	56597	89949;89950	89949					0.16009074413159396
TRRRAIILAAA	11	Unmodified	_TRRRAIILAAA_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	606.3869018554688	2	606.388388	1210.76222	0.024308	1.474E-05	-0.95636	-0.00057992	-0.93205	-0.00056518	606.3876290110409	107.33	0.41655	107.33	107.05	107.47	0					21	9	3	0	0	0	1.0521	1	13797	13797		24.519	2.8334	1	154450			81049	4465	56503	56598	89951	89951					0.165272714365301
TRRSPRSP	8	Unmodified	_TRRSPRSP_					0	0	0		ENST00000572574.5_1_16:3108602-3109024:-|nuORF	ENST00000572574.5_1_16:3108602-3109024:-|nuORF	ENST00000572574.5_1_16:3108602-3109024:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.732421875	2	478.772857	955.531161	0.11662	5.5836E-05	1.7082	0.00081784	1.8248	0.00087367	478.77373309170935	39.374	1.0653	39.149	38.562	39.627	-0.2257					55	28	3	0	0	0	0.027866	1	3293	3293		30.504	1.3541	1	888350			81050	17060	56504	56599	89952	89952					0.05161643454653131
TRRVKSGL	8	Unmodified	_TRRVKSGL_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	458.7873840332031	2	458.787976	915.561398	-0.24714	-0.00011339	-1.5444	-0.00070857	-1.7916	-0.00082196	458.78724723277566	92.233	1.8673	92.224	91.752	93.619	-0.0082932					114	44	3	0	0	0	0.97924	1	11686	11686		40.573	5.3719	1	30570000			81051	9340	56505	56600	89953	89953					0.10024002119860143
TRRVKSGL	8	Unmodified	_TRRVKSGL_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.78753662109375	2	458.787976	915.561398	-0.2269	-0.0001041	-1.4744	-0.00067643	-1.7013	-0.00078052	458.7872764164579	92.323	1.6929	92.2	91.76	93.453	-0.12242					146	39	6	0	0	0	0.97924	1	11373	11373		40.573	7.057	1	20312000			81052	9340	56505	56600	89954	89954					0.10024002119860143
TRRWNHWWDKC	11	Unmodified	_TRRWNHWWDKC_					0	0	0		ENST00000250405.9_2_14:23777280-23778100:+|nuORF	ENST00000250405.9_2_14:23777280-23778100:+|nuORF	ENST00000250405.9_2_14:23777280-23778100:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	3	529.917721	1586.73133	-1.0919	-0.0005786	-2.5839	-0.0013692	-3.6757	-0.0019478	530.2511987606354	73.362	0.21893	73.362	73.219	73.438	0					7	5	2	0	0	0	0.024892	1	8936	8936		8.7993	2.7983	1	87145			81053	11347	56506	56601	89955	89955					-0.03856249940054113
TRRWRRWGRPS	11	Unmodified	_TRRWRRWGRPS_					0	0	0			REV__ENST00000580695.1_1_6:165957046-166399711:-|nuORF	REV__ENST00000580695.1_1_6:165957046-166399711:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.310791015625	3	505.283503	1512.82868	-0.81969	-0.00041418	-0.92638	-0.00046809	-1.7461	-0.00088226	505.28298705773324	35.288	0.3987	35.288	35.056	35.455	0					23	10	3	0	0	0	0.024869	1	2702	2702		6.3209	0	1	218700	+		81054	34667	56507	56602	89956	89956					0.09277900051074539
TRSAAMKL	8	Unmodified	_TRSAAMKL_					0	0	0		ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	438.2636413574219	2	439.249837	876.485122	-0.56905	-0.00024995	-0.74578	-0.00032758	-1.3148	-0.00057754	439.2489559338261	41.053	0.34811	40.917	40.712	41.06	-0.13553					15	8	2	0	0	0	0.027866	1	3578	3578		29.15	8.2026	1	85274			81055	10080	56508	56603	89957	89957					0.041938622282032156
TRSMLVLCT	9	Unmodified	_TRSMLVLCT_					0	0	0		ENST00000256496.7_1_3:5220967-5221039:+|nuORF	ENST00000256496.7_1_3:5220967-5221039:+|nuORF	ENST00000256496.7_1_3:5220967-5221039:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2718505859375	2	512.269912	1022.52527	-0.24649	-0.00012627	2.734	0.0014006	2.4875	0.0012743	512.2709906728722	104.04	1.3639	104.04	103.63	105	0					74	36	3	0	0	0	0.87448	1	13384	13384		34.173	2.6427	1	306250			81056	11397	56509	56604	89958	89958					0.014910408364585237
TRSPLLTQL	9	Unmodified	_TRSPLLTQL_					0	0	0		ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.8092041015625	2	514.808574	1027.60259	-0.25407	-0.0001308	0.44366	0.0002284	0.18959	9.7605E-05	514.8084644994826	67.377	1.0957	67.377	66.968	68.064	0					69	27	4	0	0	0	0.18994	1	8069	8069		90.601	5.2414	1	9407900			81057	3736	56510	56605	89959	89959					0.0898971836866167
TRSPLLTQL	9	Unmodified	_TRSPLLTQL_					0	0	0		ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.8084716796875	2	514.808574	1027.60259	-0.25037	-0.00012889	-0.14604	-7.5184E-05	-0.39641	-0.00020407	514.8084554750968	67.555	1.3612	67.579	67.071	68.432	0.023903					72	34	5	0	0	0	0.079716	3	7979	7979;7992;8004		117.81	8.3327	1	9428800			81058	3736	56510	56605	89960;89961;89962	89960					0.0898971836866167
TRSRLLVV	8	Unmodified	_TRSRLLVV_					0	0	0		ENST00000434411.5_1_17:75084757-75084847:+|nuORF	ENST00000434411.5_1_17:75084757-75084847:+|nuORF	ENST00000434411.5_1_17:75084757-75084847:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2950134277344	2	472.306001	942.597449	-0.063348	-2.992E-05	0.85018	0.00040155	0.78683	0.00037163	472.30566598957756	34.336	0.24033	34.129	34.043	34.284	-0.20696					6	5	2	0	0	0	0.027866	1	2511	2511		26.796	0	1	49887			81059	14244	56511	56606	89963	89963					0.12385459296706358
TRSRVQSQP	9	Unmodified	_TRSRVQSQP_					0	0	0			REV__ENST00000542351.5_2_12:6788321-6797908:-|nuORF	REV__ENST00000542351.5_2_12:6788321-6797908:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.8084716796875	2	529.788704	1057.56285	-1.2404	-0.00065712	1.589	0.00084182	0.34862	0.0001847	529.7894923394097	73.299	0.29262	73.299	73.034	73.327	0					12	7	2	0	0	0	0.024539	1	8936	8936		20.947	14.634	1	1065100	+		81060	34791	56512	56607	89964	89964					0.03637591417941621
TRSTESVKNP	10	Unmodified	_TRSTESVKNP_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0|NRXN3	REV__nc|ENSG00000021645|Q9Y4C0|NRXN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.7960815429688	2	559.793652	1117.57275	0.19867	0.00011121	4.0302	0.0022561	4.2289	0.0023673	559.7957126645771	16.713	0.61002	16.566	16.433	17.043	-0.14753					37	21	3	0	0	0	1.1329	1	81	81		27.882	1.1893	1	151580	+		81061	19996	56513	56608	89965	89965					0.018667346326765255
TRSYMRVKL	9	Unmodified	_TRSYMRVKL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.7644653320312	2	577.32915	1152.64375	0.15137	8.7391E-05	-1.0184	-0.00058795	-0.86702	-0.00050056	577.3282603906297	80.458	0.85568	80.221	79.831	80.686	-0.23783					36	20	3	0	0	0	0.024484	1	9585	9585		30.318	6.795	1	288520	+		81062	20917	56514	56609	89966	89966					0.07353156136468897
TRSYMRVKL	9	Unmodified	_TRSYMRVKL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	577.32915	1152.64375	-0.15256	-8.8076E-05	-1.1314	-0.00065317	-1.2839	-0.00074125	577.3281391584526	80.401	0.6974	80.195	79.969	80.667	-0.20633	-0.0056648	-6.477E-05	NaN	23.523	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318060	+		81063	20917	56514	56609							0.07353156136468897
TRSYMRVKL	9	Unmodified	_TRSYMRVKL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	577.32915	1152.64375	-0.31951	-0.00018446	-1.0908	-0.00062978	-1.4104	-0.00081424	577.3283422509409	80.332	0.57743	80.186	79.995	80.572	-0.146	-0.014444	-1.7976E-05	NaN	23.523	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241970	+		81064	20917	56514	56609							0.07353156136468897
TRTENTQLN	9	Unmodified	_TRTENTQLN_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2;REV__UBE3C-PTPRN2|1|fusion	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2975463867188	2	538.770177	1075.5258	-0.49518	-0.00026679	-3.7889	-0.0020414	-4.2841	-0.0023081	538.7681207849565	59.137	0.91909	59.223	59.099	60.018	0.085682					30	24	2	0	0	0	0.023239	1	6705	6705		64.207	0	1	263630	+		81065	24992;37751	56515	56610	89967	89967					-0.008941249184545086
TRTGVSKM	8	Unmodified	_TRTGVSKM_					0	0	0			REV__ENSG00000088899|ENST00000337576|LZTS3	REV__ENSG00000088899|ENST00000337576|LZTS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.76629638671875	2	440.23947	878.464386	-0.97714	-0.00043018	0.3876	0.00017064	-0.58954	-0.00025954	440.24194553008203	37.216	0.19104	36.997	36.923	37.114	-0.2195					5	4	2	0	0	0	0.027866	1	2979	2979		40.573	18.87	1	31342	+		81066	20829	56516	56611	89968	89968					0.02029271848539338
TRTIESPLL	9	Unmodified	_TRTIESPLL_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3133544921875	2	515.300581	1028.58661	-0.40197	-0.00020713	-2.8081	-0.001447	-3.2101	-0.0016542	515.8013670977991	88.178	0.15586	88.008	87.893	88.049	-0.17054					5	3	2	0	0	0	0.024477	1	10735	10735		44.117	14.947	1	40749	+		81067	20415	56517	56612	89969	89969					0.07346012131779389
TRTISRVP	8	Unmodified	_TRTISRVP_					0	0	0			REV__ENST00000492632.5_1_20:9288449-9449247:+|nuORF	REV__ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2800598144531	2	465.279983	928.545414	-0.188	-8.7473E-05	0.53497	0.00024891	0.34697	0.00016144	465.2799934559697	88.073	1.1725	87.9	87.497	88.67	-0.17254					86	28	5	0	0	0	0.97794	1	10732	10732		40.778	5.5774	1	1783100	+		81068	21218	56518	56613	89970	89970					0.07828295882939074
TRTLKKVAVV	10	Unmodified	_TRTLKKVAVV_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	557.2296142578125	2	557.868966	1113.72338	-0.91492	-0.0005104	4.2716	0.002383	3.3567	0.0018726	558.373319049301	43.233	0.26016	43.007	42.873	43.133	-0.22597					9	6	2	0	0	0	0.03519	1	3949	3949		19.997	0	1	70351	+		81069	20714	56519	56614	89971	89971					0.17106546082118257
TRTPKKGRG	9	Unmodified	_TRTPKKGRG_					0	0	0			REV__ENSG00000147316|ENST00000344683|MCPH1	REV__ENSG00000147316|ENST00000344683|MCPH1	MSMS	OPSCC_40_ClassI_Rep-1	4	500.81842041015625	2	500.804157	999.593761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.06	1	111.93	111.43	112.43	-0.12724								0	0	0	0.74743	1	13681	13681		10.265	1.4429	1		+		81070	24547	56520	56615	89972	89972					0.09394789522855262
TRTPVSPQV	9	Unmodified	_TRTPVSPQV_					0	0	0		nc|ENSG00000172059|O14901-2|KLF11;ENSG00000172059|ENST00000305883|KLF11	nc|ENSG00000172059|O14901-2|KLF11	nc|ENSG00000172059|O14901-2|KLF11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.77789306640625	2	492.777274	983.539994	-0.58139	-0.0002865	0.1337	6.5885E-05	-0.44769	-0.00022061	492.77735506792254	36.519	0.63688	36.557	36.166	36.803	0.038044					70	17	5	0	0	0	0.32811	1	2882	2882		71.877	0	1	8954300			81071	8237	56521	56616	89973	89973					0.04756572300482276
TRTQRIQL	8	Unmodified	_TRTQRIQL_					0	0	0		nc|ENSG00000171243|Q6X4U4-2|SOSTDC1;ENSG00000171243|ENST00000307068|SOSTDC1	nc|ENSG00000171243|Q6X4U4-2|SOSTDC1	nc|ENSG00000171243|Q6X4U4-2|SOSTDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7814025878906	2	508.30399	1014.59343	-0.25551	-0.00012987	-3.7827	-0.0019227	-4.0382	-0.0020526	508.30204598782706	52.89	0.76185	52.743	52.406	53.168	-0.14723					48	19	3	0	0	0	0.027866	1	5638	5638		49.442	0	1	1229500			81072	18513	56522	56617	89974	89974					0.08671369803005291
TRTTATVNP	9	Unmodified	_TRTTATVNP_					0	0	0		ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.800048828125	2	480.759081	959.503609	-1.1169	-0.00053695	0.37824	0.00018184	-0.73864	-0.00035511	480.7590304714949	27.11	0.39656	27.192	26.996	27.392	0.081293					16	10	2	0	0	0	0.019995	1	1373	1373		90.37	5.4543	1	308100			81073	4501	56523	56618	89975	89975					0.022236954037680334
TRTTATVNP	9	Unmodified	_TRTTATVNP_					0	0	0		ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.759081	959.503609	-0.098361	-4.7288E-05	-0.90963	-0.00043731	-1.008	-0.0004846	480.75860417498365	27.466	0.51412	27.466	27.251	27.765	0	0.095933	-0.00045713	NaN	90.37	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175040			81074	4501	56523	56618							0.022236954037680334
TRTTATVNP	9	Unmodified	_TRTTATVNP_					0	0	0		ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	ENSG00000131149|ENST00000253458|GSE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	480.759081	959.503609	-0.26727	-0.00012849	-0.62511	-0.00030053	-0.89238	-0.00042902	480.7586029426908	27.466	0.55222	27.453	27.17	27.722	-0.012983	0.08272	-0.00018357	NaN	90.37	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195600			81075	4501	56523	56618							0.022236954037680334
TRTYNSSW	8	Unmodified	_TRTYNSSW_					0	0	0		ENST00000373609.1_1_1:32655833-32657993:+|nuORF	ENST00000373609.1_1_1:32655833-32657993:+|nuORF	ENST00000373609.1_1_1:32655833-32657993:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.73583984375	2	507.735606	1013.45666	-0.40399	-0.00020512	0.39009	0.00019806	-0.013907	-7.0609E-06	507.73579833306013	39.928	0.83903	39.703	39.42	40.259	-0.22501					61	21	4	0	0	0	0.39824	2	3413	3413;3427		97.473	4.2772	1	5946300			81076	13080	56524	56619	89976;89977	89976					-0.0495316414737772
TRVEPPQY	8	Unmodified	_TRVEPPQY_					0	0	0		ENSG00000263761|ENST00000581492|GDF2	ENSG00000263761|ENST00000581492|GDF2	ENSG00000263761|ENST00000581492|GDF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2864685058594	2	495.256174	988.497795	-0.16037	-7.9424E-05	0.53182	0.00026339	0.37145	0.00018396	495.2561658737699	51.242	0.83465	50.965	50.778	51.613	-0.27643					37	21	3	0	0	0	0.027866	1	5307	5307		25.45	1.2474	1	230430			81077	10963	56525	56620	89978	89978					0.0030859689209137287
TRVGLARA	8	Unmodified	_TRVGLARA_					0	0	0			REV__ENSG00000155729|ENST00000359878|KCTD18	REV__ENSG00000155729|ENST00000359878|KCTD18	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.2619323730469	2	422.261594	842.508634	2.0478	0.00086471	-1.8666	-0.0007882	0.18118	7.6506E-05	422.26077970543906	19.322	0.44624	19.088	18.878	19.325	-0.23345					19	8	3	0	0	0	1.0574	1	389	389		18.324	3.6603	1	142440	+		81078	25022	56526	56621	89979	89979					0.08108044057030384
TRVLAEMLTE	10	Unmodified	_TRVLAEMLTE_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.8089599609375	2	581.810456	1161.60636	-0.35026	-0.00020379	-2.3088	-0.0013433	-2.659	-0.0015471	581.809064621751	17.838	0.73864	17.695	17.552	18.291	-0.14278					17	14	2	0	0	0	1.1088	1	208	208		31.53	3.6476	1	128110			81079	18310	56527	56622	89980	89980					0.032020200801980536
TRVLEWID	8	Unmodified	_TRVLEWID_					0	0	0		ENST00000559126.5_1_15:85186703-85196938:-|nuORF;ENSG00000177082|ENST00000434634|WDR73;ENST00000560966.5_1_15:85196845-85196905:-|nuORF;ENST00000560252.5_1_15:85191115-85197505:-|nuORF;ENST00000559994.5_1_15:85189295-85197510:-|nuORF;ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF;ENST00000559994.5_1_15:85189295-85197510:-|nuORF;ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3130493164062	2	516.279649	1030.54475	-0.40756	-0.00021042	4.4421	0.0022934	4.0346	0.002083	516.2812861310457	88.095	0.58963	87.925	87.625	88.214	-0.17054					27	14	3	0	0	0	0.027866	1	10703	10703		58.782	5.4305	1	161190			81080	8704;16791;16769	56528	56623	89981	89981					0.030694564432451443
TRVLQQCF	8	Unmodified	_TRVLQQCF_					0	0	0			REV__ENSG00000170185|ENST00000307017|USP38	REV__ENSG00000170185|ENST00000307017|USP38	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7590637207031	2	497.760569	993.506586	-1.6707	-0.00083161	-1.8198	-0.00090584	-3.4905	-0.0017374	497.7595527982125	60.283	1.4285	60.362	59.974	61.402	0.078884					114	37	4	0	0	0	0.81662	1	6832	6832		57.811	5.5121	1	6635200	+		81081	26441	56529	56624	89982	89982					0.009572472569061574
TRVQPTPL	8	Unmodified	_TRVQPTPL_					0	0	0		ENSG00000073169|ENST00000380903|SELENOO;ENST00000380903.6_1_22:50639465-50655786:+|nuORF	ENSG00000073169|ENST00000380903|SELENOO	ENSG00000073169|ENST00000380903|SELENOO	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.2693786621094	2	456.269084	910.523616	-0.016669	-7.6056E-06	-0.65379	-0.0002983	-0.67046	-0.00030591	456.2688010774782	45.082	1.6533	45.082	44.725	46.378	0					122	47	5	0	0	0	0.2822	1	4403	4403		119.56	0	1	24759000			81082	1503	56530	56625	89983	89983					0.06477491134376123
TRVRYQQVDK	10	Unmodified	_TRVRYQQVDK_					0	0	0		ENST00000527037.5_1_11:117090171-117090489:-|nuORF	ENST00000527037.5_1_11:117090171-117090489:-|nuORF	ENST00000527037.5_1_11:117090171-117090489:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.8885192871094	3	431.573837	1291.69968	0.68421	0.00029529	-2.6211	-0.0011312	-1.9369	-0.00083592	431.5726778578273	21.962	0.42736	21.774	21.58	22.007	-0.18894					14	8	2	0	0	0	0.03519	1	714	714		24.232	5.7008	1	16039			81083	16138	56531	56626	89984	89984					0.06550080577653716
TRVVKLMYK	9	Unmodified	_TRVVKLMYK_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.3109130859375	2	569.344269	1136.67399	-0.22325	-0.0001271	3.5926	0.0020455	3.3694	0.0019183	569.346533156112	31.311	0.11716	31.07	30.995	31.112	-0.24109					4	2	2	0	0	0	0.024495	1	2068	2068		34.173	1.3601	1	27381			81084	1176	56532	56627	89985	89985					0.11111514801655176
TRVWLSSP	8	Unmodified	_TRVWLSSP_					0	0	0			REV__ENST00000378536.4_1_1:2240916-2241354:+|nuORF	REV__ENST00000378536.4_1_1:2240916-2241354:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.2451477050781	2	473.261259	944.507966	0.20958	9.9188E-05	3.2172	0.0015226	3.4268	0.0016218	473.26297462336436	45.84	0.61942	45.883	45.647	46.267	0.04388					23	17	2	0	0	0	0.027866	1	4393	4393		27.882	0	1	200990	+		81085	31406	56533	56628	89986	89986					0.033492046173250856
TRWARLYV	8	Unmodified	_TRWARLYV_					0	0	0			REV__ENST00000397289.6_1_22:36545187-36556848:-|nuORF	REV__ENST00000397289.6_1_22:36545187-36556848:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7684326171875	2	532.803626	1063.5927	-1.3952	-0.00074337	-2.6177	-0.0013947	-4.0129	-0.0021381	532.8021938592168	25.139	0.61713	25.104	24.815	25.432	-0.034395					40	14	4	0	0	0	0.027866	1	1121	1121		30.504	15.639	1	362510	+		81086	30724	56534	56629	89987	89987					0.06344575153934784
TRYQGVNLY	9	Unmodified	_TRYQGVNLY_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.2877807617188	2	557.288005	1112.56146	-0.70781	-0.00039445	-0.13594	-7.5759E-05	-0.84375	-0.00047021	557.2878059255894	48.211	0.98689	48.114	47.743	48.729	-0.097553					62	26	4	0	0	0	0.37611	1	4772	4772		67.494	12.729	1	2289500			81087	1434	56535	56630	89988	89988					0.009679573292032728
TSAAPVSLSKY	11	Unmodified	_TSAAPVSLSKY_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.2677612304688	2	562.303321	1122.59209	-0.25763	-0.00014487	-0.92497	-0.00052011	-1.1826	-0.00066498	562.302792483207	23.597	0.66836	23.417	23.112	23.78	-0.17989					45	15	4	0	0	0	0.024771	1	952	952		51.193	16.041	1	1458900	+		81088	21364	56536	56631	89989	89989					0.035696909235639396
TSAPDIPDQY	10	Unmodified	_TSAPDIPDQY_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7562255859375	2	553.753661	1105.49277	-0.54974	-0.00030442	4.4352	0.002456	3.8854	0.0021516	553.7560845212123	22.623	1.3678	22.437	22.189	23.557	-0.18539					66	30	4	0	0	0	0.74632	1	805	805		64.207	2.0999	1	1263100	+		81089	21657	56537	56632	89990	89990					-0.055757517611937146
TSAPVWLLL	9	Unmodified	_TSAPVWLLL_					0	0	0			REV__nc|ENSG00000167851|Q9UGN4-4|CD300A	REV__nc|ENSG00000167851|Q9UGN4-4|CD300A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.77825927734375	2	500.29731	998.580068	-0.3365	-0.00016835	-4.3106	-0.0021566	-4.6471	-0.0023249	500.29492736017926	69.228	0.41206	69.244	69.053	69.465	0.015121					14	10	2	0	0	0	0.024466	1	8223	8223		18.324	0	1	66700	+		81090	36899	56538	56633	89991	89991					0.08072118971062991
TSAYYRSAKGI	11	Unmodified	_TSAYYRSAKGI_					0	0	0		ENSG00000206418|ENST00000649141|RAB12;nc|ENSG00000206418|Q6IQ22|RAB12	ENSG00000206418|ENST00000649141|RAB12	ENSG00000206418|ENST00000649141|RAB12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	608.816650390625	2	608.81967	1215.62479	-0.21206	-0.00012911	-4.3275	-0.0026346	-4.5395	-0.0027637	608.8169655148004	99.671	1.2822	99.681	99.268	100.55	0.010231					75	31	5	0	0	0	0.75995	1	12685	12685		60.118	3.3972	1	4620800			81091	10469	56539	56634	89992	89992					0.025598980464110355
TSCPFYNEYF	10	Unmodified	_TSCPFYNEYF_					0	0	0		ENST00000325076.9_1_20:34190424-34191756:-|nuORF	ENST00000325076.9_1_20:34190424-34191756:-|nuORF	ENST00000325076.9_1_20:34190424-34191756:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	424.5083923339844	3	424.174352	1269.50123	0.1543	6.545E-05	2.8096	0.0011917	2.9639	0.0012572	424.5099578061272	70.552	0.54053	70.281	69.911	70.451	-0.27185					20	14	2	0	0	0	0.91448	1	8218	8218		53.089	16.561	1	794530			81092	12266	56540	56635	89993	89993					-0.12274521116228243
TSCWMDRQAES	11	Unmodified	_TSCWMDRQAES_					0	0	0			REV__ENSG00000120318|ENST00000239440|ARAP3	REV__ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2461853027344	3	438.51315	1312.51762	-0.29128	-0.00012773	2.6547	0.0011641	2.3634	0.0010364	438.51439955908387	28.088	0.52922	28.083	27.929	28.458	-0.0042019					18	12	2	0	0	0	0.024767	1	1629	1629		25.068	7.901	1	46249	+		81093	22523	56541	56636	89994	89994					-0.1261376322177057
TSCWMDRQAES	11	Unmodified	_TSCWMDRQAES_					0	0	0			REV__ENSG00000120318|ENST00000239440|ARAP3	REV__ENSG00000120318|ENST00000239440|ARAP3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	438.51315	1312.51762	-1.0929	-0.00047924	5.3477	0.0023451	4.2548	0.0018658	438.5145285148869	28.363	0.24062	28.117	27.961	28.202	-0.24524	-0.032292	0.00293	NaN	25.068	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32180	+		81094	22523	56541	56636							-0.1261376322177057
TSDANKLTAE	10	Unmodified	_TSDANKLTAE_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2581176757812	2	525.259111	1048.50367	1.4352	0.00075388	-3.7617	-0.0019759	-2.3264	-0.001222	525.2569811048166	63.267	1.3961	63.322	62.801	64.197	0.054104					99	37	5	0	0	0	0.37307	1	7327	7327		101.46	8.3166	1	5318600			81095	5771	56542	56637	89995	89995					-0.018643493869149097
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.2852172851562	2	599.285325	1196.5561	-0.56027	-0.00033576	0.53051	0.00031793	-0.029757	-1.7833E-05	599.285521295644	41.414	0.71736	41.278	41.022	41.74	-0.13553					63	18	6	0	0	0	0.0081025	1	3660	3660		172.25	108.04	1	2043600			81096	16133	56543	56638	89996	89996					-0.03431811043947164
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.285400390625	2	599.285325	1196.5561	-0.84326	-0.00050535	0.76142	0.00045631	-0.081835	-4.9043E-05	599.285658993943	41.646	0.61397	41.418	41.159	41.773	-0.2278					66	15	7	0	0	0	0.047364	2	3678	3678;3691		148.69	74.435	1	2123400			81097	16133	56543	56638	89997;89998	89997					-0.03431811043947164
TSDDVKEQIY	10	Unmodified	_TSDDVKEQIY_					0	0	0		ENST00000526895.5_1_11:17095982-17099246:-|nuORF;ENST00000534329.1_1_11:17098694-17099257:-|nuORF;ENSG00000110700|ENST00000525634|RPS13	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000526895.5_1_11:17095982-17099246:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.2848510742188	2	599.285325	1196.5561	-0.44465	-0.00026647	0.26823	0.00016075	-0.17642	-0.00010573	599.2853417302373	41.685	0.56503	41.454	41.196	41.761	-0.23029					58	14	6	0	0	0	0.090646	1	3678	3678		138.06	71.633	1	2062200			81098	16133	56543	56638	89999	89999					-0.03431811043947164
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2348022460938	2	530.235104	1058.45566	0.13578	7.1993E-05	-0.63997	-0.00033933	-0.50419	-0.00026734	530.2345609321485	67.213	0.95225	66.965	66.715	67.667	-0.24839					61	22	4	0	0	0	0.014013	5	7713	7703;7713;7725;7738;7750		166.78	73.663	1	7754000			81099	6197	56544	56639	90000;90001;90002;90003;90004	90001					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2345581054688	2	530.235104	1058.45566	-0.79747	-0.00042285	0.37189	0.00019719	-0.42558	-0.00022566	530.2350518335647	67.224	0.93177	67	66.714	67.646	-0.22374					63	22	4	0	0	0	0.016871	5	7726	7714;7726;7738;7750;7763		152.47	64.406	1	7708400			81100	6197	56544	56639	90005;90006;90007;90008;90009	90006					-0.07123423306939003
TSDELQFGY	9	Unmodified	_TSDELQFGY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2349853515625	2	530.235104	1058.45566	-0.46154	-0.00024472	0.15988	8.4774E-05	-0.30166	-0.00015995	530.2349111657795	67.216	0.90997	66.978	66.72	67.629	-0.23814					68	21	5	0	0	0	0.016838	4	7734	7711;7721;7734;7746		152.63	63.828	1	8105400			81101	6197	56544	56639	90010;90011;90012;90013	90012					-0.07123423306939003
TSDKPGSPY	9	Unmodified	_TSDKPGSPY_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2263488769531	2	476.224539	950.434526	-0.06337	-3.0178E-05	0.33457	0.00015933	0.2712	0.00012915	476.2245644592998	27.256	1.0208	27.014	26.701	27.721	-0.24217					67	23	4	0	0	0	0.34489	1	1490	1490		69.628	3.1983	1	2346600			81102	1381	56545	56640	90014	90014					-0.042673886158013374
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.7719116210938	2	606.772582	1211.53061	-0.76857	-0.00046635	0.70287	0.00042648	-0.065704	-3.9867E-05	606.7727999935476	32.323	0.50677	32.086	31.91	32.417	-0.23666					33	11	4	0	0	0	0.0092789	2	2226	2216;2226		171.33	17.212	1	847150			81103	1545	56546	56641	90015;90016	90016					-0.06669285566363214
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	606.7726440429688	2	606.772582	1211.53061	0.046872	2.8441E-05	-0.05349	-3.2456E-05	-0.0066182	-4.0157E-06	606.7724303922389	32.395	0.59047	32.202	31.986	32.576	-0.19262					42	13	4	0	0	0	0.002678	1	2220	2220		186.41	60.168	1	748840			81104	1545	56546	56641	90017	90017					-0.06669285566363214
TSDLQDKNEY	10	Unmodified	_TSDLQDKNEY_					0	0	0		ENST00000551200.5_1_12:102471044-102512308:-|nuORF;ENSG00000075188|ENST00000552283|NUP37	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	ENST00000551200.5_1_12:102471044-102512308:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	606.7723999023438	2	606.772582	1211.53061	-0.56338	-0.00034184	0.3183	0.00019314	-0.24508	-0.00014871	606.7727273297581	32.221	0.58387	32.063	31.819	32.403	-0.15772					35	13	4	0	0	0	0.10407	2	2188	2176;2188		134.77	22.355	1	899480			81105	1545	56546	56641	90018;90019	90019					-0.06669285566363214
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.7623901367188	2	570.762017	1139.50948	-0.40399	-0.00023058	0.24457	0.00013959	-0.15942	-9.099E-05	570.7620842515502	35.63	0.70834	35.414	35.1	35.809	-0.21556					49	18	4	0	0	0	0.0062026	3	2718	2707;2718;2729		144.77	75.981	1	3948300			81106	2659	56547	56642	90020;90021;90022	90021					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.7620239257812	2	570.762017	1139.50948	-0.21983	-0.00012547	-0.051114	-2.9174E-05	-0.27094	-0.00015464	570.7619399375335	35.587	0.60662	35.375	35.077	35.684	-0.21246					47	15	5	0	0	0	0.0081089	3	2710	2700;2710;2725		142.36	65.587	1	3982500			81107	2659	56547	56642	90023;90024;90025	90024					-0.05469250875239595
TSDNGKDGLAY	11	Unmodified	_TSDNGKDGLAY_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.7617797851562	2	570.762017	1139.50948	-0.42445	-0.00024226	0.102	5.8218E-05	-0.32245	-0.00018404	570.7620402476653	35.451	0.63518	35.264	34.985	35.621	-0.18675					44	16	4	0	0	0	0.00041499	3	2669	2669;2680;2693		156.16	79.387	1	4120100			81108	2659	56547	56642	90026;90027;90028	90026					-0.05469250875239595
TSDQQRQLY	9	Unmodified	_TSDQQRQLY_					0	0	0		nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7780151367188	2	569.778002	1137.54145	0.013148	7.4916E-06	-0.31177	-0.00017764	-0.29862	-0.00017015	569.777754939174	32.514	0.66598	32.277	31.998	32.664	-0.23667					49	15	4	0	0	0	0.057894	2	2239	2239;2250		125.81	46.363	1	2310000			81109	10052	56548	56643	90029;90030	90029					-0.021818384014068215
TSDQQRQLY	9	Unmodified	_TSDQQRQLY_					0	0	0		nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7781982421875	2	569.778002	1137.54145	0.53777	0.00030641	-0.8497	-0.00048414	-0.31193	-0.00017773	569.7774073175017	32.553	1.0381	32.361	31.986	33.024	-0.19261					63	24	5	0	0	0	0.057894	3	2239	2239;2248;2262		125.81	58.927	1	2234400			81110	10052	56548	56643	90031;90032;90033	90031					-0.021818384014068215
TSDQQRQLY	9	Unmodified	_TSDQQRQLY_					0	0	0		nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-2|OCLN;ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	nc|ENSG00000197822|Q16625-3|OCLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7779541015625	2	569.778002	1137.54145	-0.24819	-0.00014141	-0.069616	-3.9665E-05	-0.3178	-0.00018108	569.7778862409058	32.367	0.9032	32.209	31.904	32.807	-0.15772					52	21	5	0	0	0	0.027092	3	2199	2199;2212;2226		143.89	58.971	1	2463700			81111	10052	56548	56643	90034;90035;90036	90034					-0.021818384014068215
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2472534179688	2	528.248212	1054.48187	-1.0545	-0.00055703	0.22882	0.00012087	-0.82566	-0.00043615	528.2482931355338	44.272	0.50626	44.167	43.96	44.467	-0.10468					32	13	4	0	0	0	0.014738	1	4130	4130		163.15	80.91	1	2715900			81112	6911	56549	56644	90037	90037					-0.04319154135487224
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2484741210938	2	528.248212	1054.48187	-1.1448	-0.00060472	0.48559	0.00025651	-0.65917	-0.00034821	528.2482888659675	44.452	0.46606	44.208	44.01	44.476	-0.2444					33	12	3	0	0	0	0.12933	1	4147	4147		104.01	39.806	1	2355800			81113	6911	56549	56644	90038	90038					-0.04319154135487224
TSDVDLDKY	9	Unmodified	_TSDVDLDKY_					0	0	0		ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000569380.5_1_16:1827941-1828049:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	ENST00000564709.5_1_16:1827100-1828401:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.248212	1054.48187	-1.0239	-0.00054085	0.4271	0.00022562	-0.59676	-0.00031524	528.2482319848268	44.465	0.53372	44.246	43.972	44.506	-0.21939	0.038857	5.4697E-05	NaN	163.15	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2558500			81114	6911	56549	56644							-0.04319154135487224
TSDYVSQSY	9	Unmodified	_TSDYVSQSY_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2550659179688	2	525.224736	1048.43492	-0.13808	-7.2523E-05	0.41099	0.00021586	0.27291	0.00014334	525.2248500143118	45.943	0.94094	45.847	45.427	46.368	-0.096649					62	25	4	0	0	0	0.024466	1	4396	4396		47.657	12.039	1	4099500			81115	8016	56550	56645	90039	90039					-0.08736013686598199
TSEVWLID	8	Unmodified	_TSEVWLID_					0	0	0		nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;ENSG00000138078|ENST00000409411|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.2821044921875	2	481.745108	961.475663	-0.22748	-0.00010959	-3.9358	-0.0018961	-4.1633	-0.0020056	481.74335951869654	46.578	0.42051	46.629	46.375	46.796	0.051399					18	11	2	0	0	0	0.027866	1	4514	4514		57.811	9.8957	1	182640			81116	18317	56551	56646	90040	90040					-0.006616275763349222
TSEVWLID	8	Unmodified	_TSEVWLID_					0	0	0		nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;ENSG00000138078|ENST00000409411|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	481.745108	961.475663	0.37122	0.00017883	-5.5121	-0.0026554	-5.1409	-0.0024766	481.74250452025836	46.582	0.21642	46.582	46.48	46.696	0	-0.00011356	-0.00053388	NaN	57.811	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244260			81117	18317	56551	56646							-0.006616275763349222
TSEVWLID	8	Unmodified	_TSEVWLID_					0	0	0		nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;ENSG00000138078|ENST00000409411|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	nc|ENSG00000138078|Q4J6C6-2|PREPL	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	481.745108	961.475663	-0.46486	-0.00022395	-4.4945	-0.0021652	-4.9593	-0.0023891	481.74301318558605	46.687	0.63587	46.534	46.342	46.978	-0.15301	-0.047401	0.00044658	NaN	57.811	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240350			81118	18317	56551	56646							-0.006616275763349222
TSFEQHVLW	9	Unmodified	_TSFEQHVLW_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.7823486328125	2	573.782556	1145.55056	-0.19469	-0.00011171	-0.02664	-1.5285E-05	-0.22133	-0.00012699	573.782528465205	64.351	3.893	64.123	62.569	66.462	-0.22773					221	97	4	0	0	0	0.2101	2	7309	7299;7309		87.696	15.819	1	5968600			81119	7968	56552	56647	90041;90042	90042					-0.016394450450889053
TSFEQHVLW	9	Unmodified	_TSFEQHVLW_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.7824096679688	2	573.782556	1145.55056	-0.36546	-0.00020969	0.14693	8.4304E-05	-0.21853	-0.00012539	573.7827277938131	64.323	3.8502	64.131	62.696	66.546	-0.19243					217	96	4	0	0	0	0.17845	2	7320	7320;7332		93.143	24.356	1	6137800			81120	7968	56552	56647	90043;90044	90043					-0.016394450450889053
TSFEQHVLW	9	Unmodified	_TSFEQHVLW_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.7826538085938	2	573.782556	1145.55056	-0.37208	-0.00021349	-0.0020392	-1.17E-06	-0.37411	-0.00021466	573.7826166563825	64.424	3.778	64.168	62.634	66.412	-0.25563					213	95	4	0	0	0	0.28753	1	7307	7307		77.318	2.2743	1	6621900			81121	7968	56552	56647	90045	90045					-0.016394450450889053
TSFFKGIL	8	Unmodified	_TSFFKGIL_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.75048828125	2	456.763104	911.511654	0.11884	5.428E-05	-2.8042	-0.0012808	-2.6853	-0.0012266	456.76098613403025	60.25	0.70487	60.25	59.951	60.656	0					40	18	3	0	0	0	0.027866	1	6980	6980		35.201	0	1	224560	+		81122	25165	56553	56648	90046	90046					0.052358743911895544
TSFFKGIL	8	Unmodified	_TSFFKGIL_					0	0	0			REV__ENSG00000158006|ENST00000374282|PAFAH2	REV__ENSG00000158006|ENST00000374282|PAFAH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.763104	911.511654	-0.0528	-2.4117E-05	-4.1066	-0.0018757	-4.1594	-0.0018999	456.76091026798514	60.439	0.48276	60.233	59.938	60.421	-0.20599	-0.008693	-0.00059414	NaN	44.531	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88726	+		81123	25165	56553	56648							0.052358743911895544
TSFGLLTIR	9	Unmodified	_TSFGLLTIR_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2976379394531	2	504.297842	1006.58113	-0.054928	-2.77E-05	-0.88891	-0.00044827	-0.94383	-0.00047597	504.2972000121617	61.882	0.77148	61.655	61.415	62.187	-0.22663					79	20	5	0	0	0	0.72875	1	7157	7157		44.117	1.7207	1	14914000	+		81124	25256	56554	56649	90047	90047					0.07810333339944009
TSFNSKFSSV	10	Unmodified	_TSFNSKFSSV_					0	0	0			REV__ENST00000377604.7_1_X:47045994-47046138:+|nuORF	REV__ENST00000377604.7_1_X:47045994-47046138:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.7484741210938	2	552.272021	1102.52949	-0.35672	-0.00019701	1.2047	0.0006653	0.84794	0.00046829	552.2723433670842	39.589	0.64821	39.425	39.044	39.692	-0.16458					50	16	4	0	0	0	0.03519	1	3366	3366		35.152	3.6222	1	1333800	+		81125	31378	56555	56650	90048	90048					-0.0176745514461345
TSFSILGTLL	10	Unmodified	_TSFSILGTLL_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2315063476562	2	526.305332	1050.59611	-0.060202	-3.1685E-05	0.88238	0.0004644	0.82218	0.00043272	526.3057340294434	50.545	0.55319	50.433	50.196	50.749	-0.11163					18	14	2	0	0	0	0.03519	1	5114	5114		40.778	11.629	1	200650	+		81126	25486	56556	56651	90049	90049					0.07283780417310481
TSGAPSSWHS	10	Unmodified	_TSGAPSSWHS_					0	0	0		ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.3008117675781	2	508.725238	1015.43592	-0.086292	-4.3899E-05	3.5415	0.0018016	3.4552	0.0017577	508.72702500464135	42.673	0.21896	42.534	42.448	42.667	-0.13929					7	5	2	0	0	0	0.03519	1	3921	3921		5.5578	0	1	38377			81127	8756	56557	56652	90050	90050					-0.07117754527041598
TSGDMVPCIW	10	Unmodified	_TSGDMVPCIW_					0	0	0			REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.7876586914062	2	554.743728	1107.4729	1.1845	0.00065712	-1.6346	-0.0009068	-0.45009	-0.00024968	555.2421508405432	82.486	0.17178	82.376	82.294	82.466	-0.11006					5	3	2	0	0	0	0.03519	1	10257	10257		35.618	11.416	1	32467	+		81128	31326	56558	56653	90051	90051					-0.07653542297157401
TSGGAPSLLPL	11	Unmodified	_TSGGAPSLLPL_					0	0	0			REV__nc|ENSG00000182896|Q3KNT9-2|TMEM95	REV__nc|ENSG00000182896|Q3KNT9-2|TMEM95	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.30767822265625	2	506.787307	1011.56006	-0.91134	-0.00046185	-2.5342	-0.0012843	-3.4455	-0.0017461	506.7876712942047	83.582	0.73642	83.582	83.435	84.171	0					19	16	2	0	0	0	0.024771	1	10503	10503		42.864	8.9426	1	38952	+		81129	36999	56559	56654	90052	90052					0.054743232404462105
TSGGIYKKA	9	Unmodified	_TSGGIYKKA_					0	0	0		ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.7734375	2	462.761092	923.507631	-0.099295	-4.595E-05	-0.2308	-0.0001068	-0.33009	-0.00015275	462.760248354532	98.33	0.29407	98.165	98.037	98.331	-0.1652					10	6	2	0	0	0	0.024436	1	12171	12171		16.473	4.2663	1	36841			81130	3115	56560	56655	90053	90053					0.04281784897466423
TSGGSLAILA	10	Unmodified	_TSGGSLAILA_					0	0	0			REV__ENST00000543147.1_1_12:9908815-9913428:-|nuORF	REV__ENST00000543147.1_1_12:9908815-9913428:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2685241699219	2	445.2531	888.491647	-1.2178	-0.00054225	2.8502	0.001269	1.6323	0.0007268	445.2542244995484	28.578	0.73597	28.332	27.842	28.578	-0.24524					39	17	3	0	0	0	0.03519	1	1715	1715		21.96	3.6355	1	572370	+		81131	34802	56561	56656	90054	90054					0.042940786605640824
TSGHVGAPLP	10	Unmodified	_TSGHVGAPLP_					0	0	0		nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;ENSG00000164398|ENST00000651883|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	nc|ENSG00000164398|Q9UKU0-7|ACSL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2693176269531	2	468.250892	934.48723	-0.10571	-4.9499E-05	0.078751	3.6875E-05	-0.02696	-1.2624E-05	468.2508933132004	42.92	0.54375	42.92	42.569	43.113	0					29	14	3	0	0	0	0.03519	1	3988	3988		79.451	24.686	1	245050			81132	7272	56562	56657	90055	90055					0.017366142376545213
TSGIHFAWV	9	Unmodified	_TSGIHFAWV_					0	0	0			REV__nc|ENSG00000087303|Q14112-2|NID2	REV__nc|ENSG00000087303|Q14112-2|NID2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.8009338378906	2	509.261259	1016.50797	0.178	9.0647E-05	-1.7651	-0.0008989	-1.5871	-0.00080825	509.2605420795525	59.835	1.2819	59.635	58.888	60.17	-0.20016					65	34	3	0	0	0	0.024412	1	6779	6779		31.955	0	1	959070	+		81133	20798	56563	56658	90056	90056					0.00037204617331099143
TSGKRRQSKTN	11	Unmodified	_TSGKRRQSKTN_					0	0	0			REV__nc|ENSG00000017427|P05019-4|IGF1	REV__nc|ENSG00000017427|P05019-4|IGF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.738037109375	3	421.568975	1261.6851	-0.63282	-0.00026678	3.6316	0.001531	2.9988	0.0012642	421.57065590821173	23.552	0.5025	23.491	23.267	23.77	-0.060862					19	11	2	0	0	0	0.024746	1	909	909		21.032	0	1	261390	+		81134	36438	56564	56659	90057	90057					0.06472008429523157
TSGKRRQSKTN	11	Unmodified	_TSGKRRQSKTN_					0	0	0			REV__nc|ENSG00000017427|P05019-4|IGF1	REV__nc|ENSG00000017427|P05019-4|IGF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	421.568975	1261.6851	-0.14232	-5.9999E-05	3.6193	0.0015258	3.4769	0.0014658	421.57056291726695	23.383	0.72868	23.459	23.272	24.001	0.076241	-0.016113	-4.7051E-06	NaN	31.068	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239620	+		81135	36438	56564	56659							0.06472008429523157
TSGKTHLRK	9	Unmodified	_TSGKTHLRK_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7879638671875	2	514.30399	1026.59343	-0.7777	-0.00039998	0.096759	4.9763E-05	-0.68094	-0.00035021	514.3039248021852	27.565	0.56124	27.565	27.323	27.884	0					29	14	3	0	0	0	0.024484	1	1568	1568		30.318	9.3708	1	88249	+		81136	23713	56565	56660	90058	90058					0.08119369803011978
TSGKYCLKK	9	Unmodified	_TSGKYCLKK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.310791015625	2	514.283877	1026.5532	-0.91116	-0.00046859	-3.1174	-0.0016032	-4.0286	-0.0020718	514.2823927521217	64.636	0.94588	64.373	64.119	65.065	-0.2626					48	18	3	0	0	0	0.024427	1	7692	7692		34.173	0	1	1118600	+		81137	22150	56566	56661	90059	90059					0.040986870881852155
TSGKYCLKK	9	Unmodified	_TSGKYCLKK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.310791015625	2	514.283877	1026.5532	-0.88397	-0.00045461	-2.0259	-0.0010419	-2.9099	-0.0014965	514.2826540280275	65.452	0.53766	65.179	64.825	65.362	-0.27282					27	14	2	0	0	0	0.024427	1	7692	7692		34.173	0	1	569110	+		81138	22150	56566	56661	90060	90060					0.040986870881852155
TSGKYCLKK	9	Unmodified	_TSGKYCLKK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	514.283877	1026.5532	0.038707	1.9906E-05	-4.1165	-0.0021171	-4.0778	-0.0020972	514.2818594538516	64.369	0.66677	64.369	64.133	64.8	0	-0.033101	-0.0003183	NaN	34.173	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1257500	+		81139	22150	56566	56661							0.040986870881852155
TSGKYCLKK	9	Unmodified	_TSGKYCLKK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.283877	1026.5532	-0.12203	-6.2757E-05	-3.9083	-0.00201	-4.0304	-0.0020727	514.2819277316297	64.354	0.74407	64.4	64.081	64.825	0.045502	-0.0021442	-0.00010413	NaN	34.173	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1318100	+		81140	22150	56566	56661							0.040986870881852155
TSGKYCLKK	9	Unmodified	_TSGKYCLKK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.283877	1026.5532	-0.31454	-0.00016176	-4.4576	-0.0022925	-4.7722	-0.0024543	514.2812959776402	64.653	0.27674	64.45	64.224	64.5	-0.20254	0.048454	-0.00066914	NaN	34.173	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84976	+		81141	22150	56566	56661							0.040986870881852155
TSGKYCLKK	9	Unmodified	_TSGKYCLKK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.283877	1026.5532	-0.53296	-0.0002741	-3.3723	-0.0017343	-3.9053	-0.0020084	514.2817259320711	64.673	0.35136	64.418	64.191	64.542	-0.25562	0.015505	0.00044717	NaN	34.173	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86156	+		81142	22150	56566	56661							0.040986870881852155
TSGLKSPKS	9	Unmodified	_TSGLKSPKS_					0	0	0		nc|ENSG00000128573|O15409-5|FOXP2;ENST00000459666.5_1_7:114066566-114268765:+|nuORF;nc|ENSG00000128573|O15409-7|FOXP2;nc|ENSG00000128573|O15409-6|FOXP2;ENSG00000128573|ENST00000350908|FOXP2;nc|ENSG00000128573|O15409-9|FOXP2;nc|ENSG00000128573|O15409-4|FOXP2;nc|ENSG00000128573|O15409-8|FOXP2	nc|ENSG00000128573|O15409-5|FOXP2	nc|ENSG00000128573|O15409-5|FOXP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2680969238281	2	452.758549	903.502546	-0.53802	-0.00024359	4.1993	0.0019013	3.6613	0.0016577	452.76026938976355	21.108	0.34443	21.108	20.9	21.244	0					9	6	2	0	0	0	0.024436	1	626	626		16.473	0	1	26276			81143	4296	56567	56662	90061	90061					0.046934810348602696
TSGLQNPH	8	Unmodified	_TSGLQNPH_					0	0	0			REV__nc|ENSG00000166863|Q9UHF0-2|TAC3	REV__nc|ENSG00000166863|Q9UHF0-2|TAC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2539367675781	2	427.211766	852.40898	-0.56692	-0.0002422	-2.4817	-0.0010602	-3.0486	-0.0013024	427.2106723917969	23.35	0.44402	23.289	23.026	23.47	-0.06086					17	10	3	0	0	0	0.027866	1	919	919		45.952	38.262	1	123500	+		81144	36894	56568	56663	90062	90062					-0.02312818347581924
TSGLSPFSLV	10	Unmodified	_TSGLSPFSLV_					0	0	0			REV__ENST00000347486.8_1_17:26989243-26989330:+|nuORF	REV__ENST00000347486.8_1_17:26989243-26989330:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2934875488281	2	504.274032	1006.53351	-0.21621	-0.00010903	0.89997	0.00045383	0.68376	0.0003448	504.27286058880645	61.61	0.38393	61.61	61.374	61.758	0					13	9	2	0	0	0	0.03519	1	7111	7111		76.774	0	1	144450	+		81145	30707	56569	56664	90063	90063					0.03050634349096981
TSGPFVKF	8	Unmodified	_TSGPFVKF_					0	0	0			REV__nc|ENSG00000130726|Q13263-2|TRIM28	REV__nc|ENSG00000130726|Q13263-2|TRIM28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7880859375	2	441.739628	881.464704	0.30124	0.00013307	-4.3882	-0.0019384	-4.0869	-0.0018054	441.73753867060896	42.523	0.78069	42.523	42.222	43.002	0					52	21	3	0	0	0	0.027866	1	3950	3950		33.516	16.151	1	851480	+		81146	23144	56571	56665	90064	90064					0.019230148400538383
TSGPLTGGLT	10	Unmodified	_TSGPLTGGLT_					0	0	0		ENST00000469300.6_1_2:128400496-128412764:-|nuORF	ENST00000469300.6_1_2:128400496-128412764:-|nuORF	ENST00000469300.6_1_2:128400496-128412764:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	452.24334716796875	2	452.242732	902.470912	-0.23991	-0.0001085	-1.2124	-0.0005483	-1.4523	-0.0006568	452.2424066530748	53.624	1.6782	53.72	53.336	55.014	0.095669					149	47	5	0	0	0	0.52982	1	5814	5814		84.916	2.675	1	123660000			81147	14902	56572	56666	90065	90065					0.0157748828091826
TSGRGLREP	9	Unmodified	_TSGRGLREP_					0	0	0			REV__MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	REV__MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7874755859375	2	486.764697	971.514842	-1.1678	-0.00056845	-0.70458	-0.00034297	-1.8724	-0.00091142	486.7625548269526	44.751	0.34069	44.602	44.422	44.763	-0.1488					14	9	2	0	0	0	0.024344	1	4303	4303		45.972	21.453	1	148030	+		81148	36373	56573	56667	90066	90066					0.027945174978981413
TSGRPLVP	8	Unmodified	_TSGRPLVP_					0	0	0			REV__ENST00000535516.5_1_13:111299446-111303026:-|nuORF	REV__ENST00000535516.5_1_13:111299446-111303026:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1947326660156	2	413.742702	825.470852	1.2483	0.00051649	-1.1173	-0.00046228	0.13102	5.4209E-05	413.7421540697448	22.878	0.68836	22.687	22.479	23.167	-0.19117					22	14	2	0	0	0	0.027866	1	867	867		24.203	0	1	109730	+		81149	34674	56574	56668	90067	90067					0.05113533071562415
TSGRTYPS	8	Unmodified	_TSGRTYPS_					0	0	0			REV__ENST00000395395.6_1_9:97062480-97062831:+|nuORF	REV__ENST00000395395.6_1_9:97062480-97062831:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	434.711599	867.408646	-0.2574	-0.0001119	1.1753	0.0005109	0.91787	0.00039901	434.71069403943284	48.834	0.14514	48.681	48.611	48.756	-0.15277					5	3	2	0	0	0	0.027866	1	4991	4991		56.721	40.248	1	30408	+		81150	31697	56575	56669	90068	90068					-0.03036238067420527
TSGTAASPHQT	11	Unmodified	_TSGTAASPHQT_					0	0	0		ENST00000545800.1_1_11:64014659-64014818:-|nuORF	ENST00000545800.1_1_11:64014659-64014818:-|nuORF	ENST00000545800.1_1_11:64014659-64014818:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2568359375	2	529.249077	1056.4836	-1.0576	-0.00055972	0.33488	0.00017724	-0.7227	-0.00038249	529.2494280979938	44.633	0.35622	44.534	44.354	44.71	-0.099445					11	8	2	0	0	0	0.02474	1	4199	4199		32.751	0	1	191330			81151	16497	56576	56670	90069	90069					-0.04238100326847416
TSGTKAKKS	9	Unmodified	_TSGTKAKKS_					0	0	0		ENSG00000164742|ENST00000297323|ADCY1;ADCY1|p.S945C|1|0.31|ENSG00000164742|chr7:45708366-45708366|C/G|missense_variant	ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	455.23712158203125	2	454.263999	906.513445	0.54185	0.00024614	3.9208	0.0017811	4.4626	0.0020272	454.2656005043423	59.278	0.63979	59.037	58.661	59.301	-0.24165					26	15	3	0	0	0	0.024466	1	6545	6545		12.812	0	1	549070			81152	7314	56577	56671	90070	90070					0.056448834091384015
TSGVSHFVQL	10	Unmodified	_TSGVSHFVQL_					0	0	0			REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	REV__ENST00000541602.5_1_11:113934022-114057819:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7491455078125	2	537.782556	1073.55056	-0.3954	-0.00021264	2.9782	0.0016016	2.5828	0.001389	537.7840194194234	76.538	0.60947	76.55	76.166	76.775	0.011635					23	14	2	0	0	0	0.03519	1	9302	9302		42.864	19.342	1	508310	+		81153	34774	56578	56672	90071	90071					0.016725549548937124
TSGVVRLND	9	Unmodified	_TSGVVRLND_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2920227050781	2	480.759081	959.503609	0.58576	0.00028161	2.9161	0.0014019	3.5018	0.0016835	480.7605133502367	77.908	0.63342	77.666	77.447	78.081	-0.24232					27	14	3	0	0	0	0.024506	1	9274	9274		16.473	0	1	256390			81154	1163	56579	56673	90072	90072					0.022236954037566647
TSGYFVGV	8	Unmodified	_TSGYFVGV_					0	0	0			REV__ENSG00000179094|ENST00000317276|PER1	REV__ENSG00000179094|ENST00000317276|PER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.24835205078125	2	415.208161	828.401769	-0.21669	-8.9972E-05	2.2493	0.00093393	2.0326	0.00084396	415.2086154323567	35.887	0.19016	35.887	35.769	35.96	0					6	4	2	0	0	0	0.027866	1	2801	2801		54.765	5.5539	1	39010	+		81155	27236	56580	56674	90073	90073					-0.019295509479889006
TSHLPIPTKL	10	Unmodified	_TSHLPIPTKL_					0	0	0			REV__ENST00000399725.6_1_18:20586385-20606112:+|nuORF	REV__ENST00000399725.6_1_18:20586385-20606112:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8303833007812	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.089	1	10826	10826		34.173	5.023	1	6583300	+		81156	31838	56581	56675	90074	90074					0.10094577919790026
TSIEKRLD	8	Unmodified	_TSIEKRLD_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.28900146484375	2	481.269281	960.52401	0.9289	0.00044705	4.2483	0.0020446	5.1772	0.0024916	481.2706415955399	65.962	0.57847	65.962	65.566	66.145	0					29	14	3	0	0	0	0.027866	1	7831	7831		58.782	0	1	391560			81157	7217	56582	56676	90075	90075					0.04216866063575253
TSIIHLNP	8	Unmodified	_TSIIHLNP_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	447.75567626953125	2	447.75581	893.497067	0.61884	0.00027709	-0.39734	-0.00017791	0.2215	9.9179E-05	447.75547321758864	57.388	0.77425	57.213	56.834	57.608	-0.1749					57	20	4	0	0	0	0.94517	1	6424	6424		45.952	0	1	3745700			81158	9130	56583	56677	90076	90076					0.046058022430429446
TSKAARVKFR	10	Unmodified	_TSKAARVKFR_					0	0	0		ENST00000476624.1_1_9:130688065-130688256:-|nuORF	ENST00000476624.1_1_9:130688065-130688256:-|nuORF	ENST00000476624.1_1_9:130688065-130688256:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3533325195312	2	582.354014	1162.69348	0.23222	0.00013523	-1.1864	-0.0006909	-0.95417	-0.00055567	582.3532009393155	102.38	1.4655	102.25	101.9	103.36	-0.12931					112	34	7	0	0	0	1.1088	1	12711	12711		31.53	5.9558	1	8525700			81159	15090	56584	56678	90077	90077					0.1186360713677459
TSKFTSRKT	9	Unmodified	_TSKFTSRKT_					0	0	0		ENST00000498707.5_1_3:64501757-64501913:-|nuORF	ENST00000498707.5_1_3:64501757-64501913:-|nuORF	ENST00000498707.5_1_3:64501757-64501913:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7674560546875	2	528.29583	1054.57711	-0.61069	-0.00032263	0.87984	0.00046482	0.26915	0.00014219	528.2959566182072	22.56	0.65153	22.485	22.223	22.875	-0.075296					31	13	3	0	0	0	0.024506	1	837	837		23.042	0	1	127930			81160	15630	56585	56679	90078	90078					0.052002438462295686
TSKHFDTSL	9	Unmodified	_TSKHFDTSL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2566528320312	2	518.258914	1034.50327	-1.1289	-0.00058507	-3.1414	-0.0016281	-4.2703	-0.0022131	518.257257262361	24.244	1.146	24.197	23.656	24.802	-0.047148					69	25	5	0	0	0	0.06122	1	1023	1023		124.59	1.6551	1	2612400			81161	6479	56586	56680	90079	90079					-0.01259724316082611
TSKHFDTSL	9	Unmodified	_TSKHFDTSL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.258914	1034.50327	-0.34037	-0.0001764	-2.1865	-0.0011332	-2.5269	-0.0013096	518.2576471279037	24.131	0.63286	24.209	23.868	24.501	0.078344	0.007081	0.0012086	NaN	124.59	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69059			81162	6479	56586	56680							-0.01259724316082611
TSKHHKNGE	9	Unmodified	_TSKHHKNGE_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2609252929688	2	519.259779	1036.50501	0.17878	9.2832E-05	2.6853	0.0013944	2.8641	0.0014872	519.2611414139045	57.92	0.57126	57.73	57.407	57.978	-0.19018					23	14	2	0	0	0	0.28753	1	6372	6372		77.318	3.0625	1	3466000	+		81163	20676	56587	56681	90080	90080					-0.011786705074882775
TSKITSTAW	9	Unmodified	_TSKITSTAW_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.76397705078125	2	497.763832	993.513111	-0.19953	-9.9319E-05	0.32086	0.00015971	0.12133	6.0393E-05	497.7636485192783	42.383	1.0638	42.26	41.888	42.952	-0.12299					99	27	5	0	0	0	0.014475	4	3810	3798;3810;3822;3834		185.72	84.466	1	7530000			81164	3693	56588	56682	90081;90082;90083;90084	90082					0.016094636892717062
TSKITSTAW	9	Unmodified	_TSKITSTAW_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.7640686035156	2	497.763832	993.513111	-0.3933	-0.00019577	-0.081677	-4.0656E-05	-0.47498	-0.00023643	497.7637369713788	42.525	1.0586	42.293	41.971	43.029	-0.23186					79	27	4	0	0	0	0.015512	4	3809	3809;3820;3832;3845		159.28	68.906	1	8405100			81165	3693	56588	56682	90085;90086;90087;90088	90085					0.016094636892717062
TSKITSTAW	9	Unmodified	_TSKITSTAW_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.763916015625	2	497.763832	993.513111	-0.58687	-0.00029212	0.48749	0.00024265	-0.099382	-4.9469E-05	497.7637653650595	42.548	1.1319	42.318	41.998	43.129	-0.22965					102	29	5	0	0	0	0.01896	4	3825	3813;3825;3840;3851		150.36	69.907	1	8337400			81166	3693	56588	56682	90089;90090;90091;90092	90090					0.016094636892717062
TSKLKYVL	8	Unmodified	_TSKLKYVL_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1;YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2975158691406	2	476.29731	950.580068	-0.099255	-4.7275E-05	0.055473	2.6422E-05	-0.043782	-2.0853E-05	476.2971620672856	40.038	0.70301	39.888	39.591	40.294	-0.1497					47	18	4	0	0	0	0.30694	2	3445	3433;3445		110.12	33.346	1	2862700			81167	1763	56589	56683	90093;90094	90094					0.10280118971036245
TSKLKYVL	8	Unmodified	_TSKLKYVL_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1;YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2973937988281	2	476.29731	950.580068	-0.14744	-7.0226E-05	0.065845	3.1362E-05	-0.081596	-3.8864E-05	476.29719665265725	40.21	0.70989	39.985	39.696	40.406	-0.225					47	18	4	0	0	0	0.27613	2	3449	3449;3469		122.18	34.422	1	3154600			81168	1763	56589	56683	90095;90096	90095					0.10280118971036245
TSKLKYVL	8	Unmodified	_TSKLKYVL_					0	0	0		ENSG00000083896|ENST00000344157|YTHDC1;nc|ENSG00000083896|Q96MU7-2|YTHDC1;YTHDC1|p.V403Qfs*34|1|0.18|ENSG00000083896|chr4:68330225-68330226|AC/-|frameshift_variant	ENSG00000083896|ENST00000344157|YTHDC1	ENSG00000083896|ENST00000344157|YTHDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.2972717285156	2	476.29731	950.580068	-0.75764	-0.00036086	0.70014	0.00033347	-0.057507	-2.739E-05	476.2975178894059	40.182	0.7543	39.952	39.66	40.414	-0.2302					54	19	4	0	0	0	0.42912	1	3438	3438		93.195	13.744	1	2864000			81169	1763	56589	56683	90097	90097					0.10280118971036245
TSKLPNDL	8	Unmodified	_TSKLPNDL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.246337890625	2	444.245275	886.475997	0.15763	7.0029E-05	0.53755	0.0002388	0.69518	0.00030883	444.24545220635093	102.77	1.0672	102.77	102.5	103.57	0.0054169					45	25	2	0	0	0	1.0106	1	13144	13144		35.618	1.4457	1	7580800			81170	1520	56590	56684	90098	90098					0.028217921435157223
TSKLPNDL	8	Unmodified	_TSKLPNDL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	444.24530029296875	2	444.245275	886.475997	0.28073	0.00012471	0.29029	0.00012896	0.57103	0.00025368	444.24547325776797	102.85	1.105	102.85	102.55	103.65	-0.0046082					64	26	5	0	0	0	0.95679	2	13099	13099;13111		44.117	1.7207	1	8156500			81171	1520	56590	56684	90099;90100	90099					0.028217921435157223
TSKLPNDL	8	Unmodified	_TSKLPNDL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.24554443359375	2	444.245275	886.475997	0.24163	0.00010734	-0.061634	-2.738E-05	0.17999	7.9961E-05	444.24543220448146	102.93	1.3256	102.81	102.15	103.48	-0.12724					79	31	4	0	0	0	0.87148	1	12791	12791		53.351	9.2347	1	6673700			81172	1520	56590	56684	90101	90101					0.028217921435157223
TSKLPNDL	8	Unmodified	_TSKLPNDL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MSMS	OPSCC_40_ClassI_Rep-2	5	444.2458190917969	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.03	1	102.91	102.41	103.41	-0.12783								0	0	0	0.80333	1	12822	12822		34.173	3.6689	1				81173	1520	56590	56684	90102	90102					0.028217921435157223
TSKLPNDL	8	Unmodified	_TSKLPNDL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MSMS	OPSCC_40_ClassI_Rep-2	5	444.245361328125	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.13	1	103	102.5	103.5	-0.12783								0	0	0	0.68521	1	12835	12835		42.396	4.5846	1				81174	1520	56590	56684	90103	90103					0.028217921435157223
TSKMQTLLE	9	Unmodified	_TSKMQTLLE_					0	0	0			REV__ENSG00000155975|ENST00000324849|VPS37A	REV__ENSG00000155975|ENST00000324849|VPS37A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.767333984375	2	525.778625	1049.5427	-0.25018	-0.00013154	1.715	0.00090174	1.4649	0.0007702	525.7792339622006	31.296	0.73264	31.143	30.724	31.456	-0.15231					24	18	2	0	0	0	0.024209	1	2023	2023		66.429	5.4573	1	255070	+		81175	25043	56591	56685	90104	90104					0.019906596431155776
TSKPPGTTEW	10	Unmodified	_TSKPPGTTEW_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS;ENST00000514075.2_1_4:8176279-8176723:+|nuORF	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.2716674804688	2	552.272021	1102.52949	-0.203	-0.00011211	0.78822	0.00043531	0.58523	0.0003232	552.2722504491969	39.713	0.79961	39.483	39.091	39.891	-0.23021					51	20	3	0	0	0	0.60734	2	3385	3372;3385		76.17	28.254	1	1546100			81176	7126	56592	56686	90105;90106	90106					-0.0176745514461345
TSKQPVGF	8	Unmodified	_TSKQPVGF_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.23406982421875	2	432.23471	862.454868	-0.43434	-0.00018774	0.71789	0.0003103	0.28354	0.00012256	432.2347968824831	35.827	0.78029	35.622	35.346	36.127	-0.20518					55	21	4	0	0	0	0.35998	3	2762	2750;2762;2779		102.77	50.474	1	2516200			81177	6577	56593	56687	90107;90108;90109	90108					0.01813826834666088
TSKQPVGF	8	Unmodified	_TSKQPVGF_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.2354736328125	2	432.23471	862.454868	0.082771	3.5777E-05	0.061662	2.6653E-05	0.14443	6.2429E-05	432.23456595580916	35.899	0.74062	35.682	35.31	36.05	-0.21661					48	20	3	0	0	0	0.35998	3	2742	2742;2753;2764		102.77	43.891	1	2318300			81178	6577	56593	56687	90110;90111;90112	90110					0.01813826834666088
TSKQPVGF	8	Unmodified	_TSKQPVGF_					0	0	0		nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	nc|ENSG00000157110|Q93062-4|RBPMS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	432.23394775390625	2	432.23471	862.454868	0.5064	0.00021888	-0.22237	-9.6118E-05	0.28402	0.00012276	432.23441045650094	35.761	0.76772	35.563	35.248	36.016	-0.19829					60	21	4	0	0	0	0.35998	3	2748	2725;2736;2748		102.77	40.752	1	2566600			81179	6577	56593	56687	90113;90114;90115	90115					0.01813826834666088
TSKVLDEMV	9	Oxidation (M)	_TSKVLDEM(Oxidation (M))V_		TSKVLDEM(1)V		TSKVLDEM(69)V	0	0	1			REV__ENSG00000163032|ENST00000295156|VSNL1	REV__ENSG00000163032|ENST00000295156|VSNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.260498046875	2	519.262807	1036.51106	-0.29137	-0.0001513	-2.3302	-0.00121	-2.6216	-0.0013613	519.2613996630357	57.88	1.5708	57.705	57.307	58.878	-0.1749					84	42	4	0	0	0	0.35646	1	6506	6506		68.787	8.6686	1	5913500	+		81180	25525	56594	56688	90116	90116		759			-0.0057333311083311855
TSKVTFSKRY	10	Unmodified	_TSKVTFSKRY_					0	0	0		ENST00000469811.1_1_14:77352823-77353039:-|nuORF	ENST00000469811.1_1_14:77352823-77353039:-|nuORF	ENST00000469811.1_1_14:77352823-77353039:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	406.8790283203125	3	406.227667	1215.66117	3.6865	0.0014975	-2.5197	-0.0010236	1.1668	0.00047398	406.56025674708513	19.759	0.2827	19.826	19.735	20.018	0.066195					7	5	2	0	0	0	0.03519	1	431	431		35.178	14.341	1	16421			81181	14917	56595	56689	90117	90117					0.061967749431460106
TSLFIARSF	9	Unmodified	_TSLFIARSF_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.29052734375	2	521.290017	1040.56548	-0.4293	-0.00022379	0.493	0.00025699	0.063693	3.3203E-05	521.2900552590511	66.014	0.72401	65.772	65.5	66.224	-0.24145					49	17	4	0	0	0	0.072913	1	7558	7558		120.31	45.263	1	1824700			81182	8540	56596	56690	90118	90118					0.0468204682290434
TSLFIARSF	9	Unmodified	_TSLFIARSF_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.2914428710938	2	521.290017	1040.56548	-0.4812	-0.00025085	0.76403	0.00039828	0.28282	0.00014743	521.2904157714307	65.987	0.8729	65.774	65.505	66.378	-0.21327					53	21	3	0	0	0	0.072913	2	7566	7550;7566		120.31	45.263	1	1907500			81183	8540	56596	56690	90119;90120	90120					0.0468204682290434
TSLFIARSF	9	Unmodified	_TSLFIARSF_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.292236328125	2	521.290017	1040.56548	-0.31812	-0.00016583	0.8398	0.00043778	0.52168	0.00027195	521.2905499823853	66.009	0.943	65.758	65.437	66.38	-0.25112					54	23	3	0	0	0	0.072913	2	7555	7541;7555		120.31	45.263	1	1972500			81184	8540	56596	56690	90121;90122	90122					0.0468204682290434
TSLILARVF	9	Unmodified	_TSLILARVF_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.3149719238281	2	510.316035	1018.61752	0.061325	3.1295E-05	0.15516	7.918E-05	0.21648	0.00011048	510.3158514637418	74.329	0.71004	74.053	73.887	74.597	-0.27573					40	16	3	0	0	0	0.19099	1	8765	8765		90.37	26.163	1	993690			81185	9151	56597	56691	90123	90123					0.10895210236662933
TSLILARVF	9	Unmodified	_TSLILARVF_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.31634521484375	2	510.316035	1018.61752	0.07356	3.7539E-05	-0.017394	-8.8762E-06	0.056167	2.8663E-05	510.3158818023413	74.336	0.79077	74.072	73.859	74.65	-0.26326					39	18	3	0	0	0	0.027092	2	8769	8756;8769		143.89	42.286	1	1254100			81186	9151	56597	56691	90124;90125	90125					0.10895210236662933
TSLILARVF	9	Unmodified	_TSLILARVF_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.3155822753906	2	510.316035	1018.61752	0.30745	0.0001569	-0.38726	-0.00019763	-0.079811	-4.0729E-05	510.31571969729646	74.074	0.71498	73.889	73.796	74.511	-0.18526					32	17	2	0	0	0	0.091713	1	8728	8728		113.41	39.157	1	780750			81187	9151	56597	56691	90126	90126					0.10895210236662933
TSLIMQYLW	9	Unmodified	_TSLIMQYLW_					0	0	0			REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	577.7694091796875	2	577.79936	1153.58417	-2.5015	-0.0014454	1.0079	0.00058238	-1.4936	-0.00086298	578.301310376254	52.008	0.32085	51.739	51.548	51.869	-0.26904					17	8	3	0	0	0	0.024263	1	5357	5357		71.296	19.96	1	125390	+		81188	19785	56598	56692	90127	90127					0.013518404024353003
TSLLFLTT	8	Unmodified	_TSLLFLTT_					0	0	0			REV__ENSG00000214140|ENST00000592014|PRCD	REV__ENSG00000214140|ENST00000592014|PRCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.2586975097656	2	448.260394	894.506234	-0.45695	-0.00020483	-2.7573	-0.001236	-3.2142	-0.0014408	448.25902243845417	89.198	2.2068	89.035	88.471	90.677	-0.1626					108	52	4	0	0	0	1.0574	1	10891	10891		26.796	1.3459	1	9232100	+		81189	28772	56599	56693	90128	90128					0.05476150808692637
TSLLGGHLRSD	11	Unmodified	_TSLLGGHLRSD_					0	0	0		ENST00000460788.5_1_2:241655965-241656310:-|nuORF	ENST00000460788.5_1_2:241655965-241656310:-|nuORF	ENST00000460788.5_1_2:241655965-241656310:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.3092651367188	2	578.309469	1154.60439	-0.063867	-3.6935E-05	1.9699	0.0011392	1.906	0.0011023	578.3104410652635	109.54	0.36329	109.41	109.26	109.63	-0.12453					29	16	2	0	0	0	1.0281	1	13503	13503		30.569	3.876	1	1325600			81190	14663	56600	56694	90129	90129					0.033267273866158575
TSLLQTTPA	9	Unmodified	_TSLLQTTPA_					0	0	0			REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2740478515625	2	466.258382	930.502212	-0.30025	-0.00013999	0.74794	0.00034873	0.44769	0.00020874	466.2586283080866	52.254	0.63538	52.254	51.836	52.472	0					22	16	2	0	0	0	0.023454	1	5552	5552		82.241	26.736	1	440910	+		81191	35687	56601	56695	90130	90130					0.03418061314982879
TSLLQTTPA	9	Unmodified	_TSLLQTTPA_					0	0	0			REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2742004394531	2	466.258382	930.502212	0.28997	0.0001352	0.14098	6.5733E-05	0.43095	0.00020093	466.2583247049221	52.365	0.45631	52.217	51.95	52.406	-0.14735					17	11	2	0	0	0	0.023454	1	5548	5548		82.241	18.033	1	310860	+		81192	35687	56601	56695	90131	90131					0.03418061314982879
TSLLQTTPA	9	Unmodified	_TSLLQTTPA_					0	0	0			REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	REV__ENST00000589986.2_1_19:38794923-38795601:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.258382	930.502212	0.23332	0.00010879	0.18239	8.5041E-05	0.41571	0.00019383	466.2583135499663	52.109	0.70765	52.201	51.857	52.565	0.091942	-0.022851	-0.00020431	NaN	67.494	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194270	+		81193	35687	56601	56695							0.03418061314982879
TSLLSLDLI	9	Unmodified	_TSLLSLDLI_					0	0	0		ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6;ENST00000515265.2_1_5:140022188-140024328:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79144287109375	2	487.792058	973.569563	-0.64793	-0.00031605	0.48175	0.00023499	-0.16618	-8.106E-05	487.79227441876844	78.361	1.7343	78.377	77.989	79.724	0.015907					129	41	5	0	0	0	0.31247	1	9664	9664		73.975	10.668	1	12051000			81194	3263	56602	56696	90132	90132					0.08172091525955238
TSLLTMILTL	10	Unmodified	_TSLLTMILTL_					0	0	0		ENST00000513573.1_1_5:20305944-20331508:+|nuORF	ENST00000513573.1_1_5:20305944-20331508:+|nuORF	ENST00000513573.1_1_5:20305944-20331508:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3325805664062	2	553.330493	1104.64643	-0.20591	-0.00011394	3.6959	0.002045	3.49	0.0019311	553.3323900913857	95.407	1.2671	95.407	95.007	96.274	0					99	29	5	0	0	0	1.0508	1	12159	12159		39.253	7.723	1	4511400			81195	15870	56603	56697	90133	90133					0.09829566750795493
TSLLWWLL	8	Unmodified	_TSLLWWLL_					0	0	0			REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2997436523438	2	516.299853	1030.58515	-0.083051	-4.2879E-05	-0.2157	-0.00011136	-0.29875	-0.00015424	516.2997814554781	104.12	2.2788	104.13	102.85	105.13	0.0031357					125	61	3	0	0	0	0.71717	1	13310	13310		65.897	0	1	6691800	+		81196	24741	56604	56698	90134	90134					0.07108422833653094
TSLRMLLSI	9	Oxidation (M)	_TSLRM(Oxidation (M))LLSI_		TSLRM(1)LLSI		TSLRM(77)LLSI	0	0	1			REV__ENST00000361436.9_1_9:130210630-130210693:-|nuORF	REV__ENST00000361436.9_1_9:130210630-130210693:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.30322265625	2	525.30481	1048.59507	-0.14172	-7.4444E-05	-3.52	-0.0018491	-3.6617	-0.0019235	525.3028768859093	63.908	1.1946	63.657	63.084	64.278	-0.25141					95	32	4	0	0	0	0.29158	1	7489	7489		76.774	7.1465	1	5748100	+		81197	30942	56605	56699	90135	90135		873			0.07271242776732834
TSLSHVQNG	9	Unmodified	_TSLSHVQNG_					0	0	0		ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	ENSG00000275004|ENST00000626650|ZNF280B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2745056152344	2	471.735606	941.456658	0.77619	0.00036616	3.6187	0.0017071	4.3949	0.0020732	471.73707968303387	42.251	0.44381	42.251	42.053	42.497	0					18	12	2	0	0	0	0.024288	1	3843	3843		62.107	17.73	1	154290			81198	11032	56606	56700	90136	90136					-0.016411641473723648
TSLSPKAEWLF	11	Unmodified	_TSLSPKAEWLF_					0	0	0			REV__ENST00000525002.5_1_6:135521662-135539115:+|nuORF	REV__ENST00000525002.5_1_6:135521662-135539115:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.3466796875	2	639.840071	1277.66559	0.9476	0.00060631	4.292	0.0027462	5.2396	0.0033525	640.3440601921316	99.976	0.55881	99.976	99.704	100.26	0					30	14	3	0	0	0	0.87596	1	12783	12783		53.089	0.15226	1	724450	+		81199	34405	56607	56701	90137	90137					0.037862393660361704
TSLSRNGGSV	10	Unmodified	_TSLSRNGGSV_					0	0	0			REV__ENST00000357360.4_1_X:153707301-153707586:-|nuORF	REV__ENST00000357360.4_1_X:153707301-153707586:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2374267578125	2	489.254163	976.493772	-0.61592	-0.00030134	0.29197	0.00014285	-0.32395	-0.0001585	489.2544634755268	35.397	0.19554	35.182	35.1	35.296	-0.21556					6	4	2	0	0	0	0.03519	1	2678	2678		71.877	0	1	83321	+		81200	30829	56608	56702	90138	90138					0.004585073984003429
TSLVALNFF	9	Unmodified	_TSLVALNFF_					0	0	0			REV__ENSG00000163472|ENST00000405535|TMEM79	REV__ENSG00000163472|ENST00000405535|TMEM79	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.27728271484375	2	506.279118	1010.54368	-0.33973	-0.000172	-3.9025	-0.0019758	-4.2423	-0.0021478	506.2771127179075	54.733	1.0073	54.587	54.281	55.288	-0.14609					71	27	4	0	0	0	0.55828	1	5858	5858		55.504	2.1528	1	10814000	+		81201	25570	56609	56703	90139	90139					0.03883242074323334
TSLVALNFF	9	Unmodified	_TSLVALNFF_					0	0	0			REV__ENSG00000163472|ENST00000405535|TMEM79	REV__ENSG00000163472|ENST00000405535|TMEM79	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.27734375	2	506.279118	1010.54368	-0.19141	-9.6909E-05	-4.2821	-0.0021679	-4.4735	-0.0022648	506.27691475401133	54.813	0.97548	54.582	54.28	55.255	-0.23087					73	27	4	0	0	0	0.31247	1	5853	5853		73.975	15.193	1	9503200	+		81202	25570	56609	56703	90140	90140					0.03883242074323334
TSLVPEDPLP	10	Unmodified	_TSLVPEDPLP_					0	0	0		sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	sp|P03220|UL95_EBVB9LategeneexpressionregulatorBGLF3OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF3PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2840576171875	2	534.284597	1066.55464	0.071868	3.8398E-05	-0.070386	-3.7606E-05	0.0014811	7.9132E-07	534.2847734562439	105.72	0.98301	105.72	105.41	106.39	0					83	35	3	0	0	0	1.089	1	13597	13597		34.173	5.023	1	282140			81203	37933	56610	56704	90141	90141					0.02402599657943938
TSMKEGREL	9	Unmodified	_TSMKEGREL_					0	0	0			REV__ENST00000586897.1_1_19:37838733-37849443:+|nuORF	REV__ENST00000586897.1_1_19:37838733-37849443:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.770263671875	2	525.766049	1049.51754	-0.58049	-0.0003052	0.44654	0.00023478	-0.13395	-7.0428E-05	525.7661099532518	31.109	0.66794	30.868	30.627	31.295	-0.24109					43	16	4	0	0	0	0.26966	1	2054	2054		79.713	5.4575	1	1238200	+		81204	35612	56611	56705	90142	90142					-0.005233951594618702
TSMQSVLQEW	10	Unmodified	_TSMQSVLQEW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	604.7858276367188	2	604.784438	1207.55432	-0.44948	-0.00027184	0.92091	0.00055695	0.47143	0.00028511	604.7847200676822	80.546	0.76655	80.308	80	80.767	-0.23784					37	18	3	0	0	0	0.47249	1	9653	9653		91.265	3.1315	1	516110			81205	1175	56612	56706	90143	90143					-0.041151433335471665
TSMQSVLQEW	10	Unmodified	_TSMQSVLQEW_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	604.7841186523438	2	604.784438	1207.55432	-0.099134	-5.9955E-05	0.11022	6.6661E-05	0.011088	6.7057E-06	604.784372139925	80.503	0.81761	80.297	80.01	80.828	-0.20632					38	19	3	0	0	0	0.37307	1	9655	9655		101.46	0.20722	1	431920			81206	1175	56612	56706	90144	90144					-0.041151433335471665
TSNPASSVI	9	Unmodified	_TSNPASSVI_					0	0	0		nc|ENSG00000175193|Q9H300-2|PARL	nc|ENSG00000175193|Q9H300-2|PARL	nc|ENSG00000175193|Q9H300-2|PARL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.7714538574219	2	438.227082	874.439611	0.9903	0.00043397	0.54064	0.00023692	1.5309	0.0006709	438.2273280620319	22.591	0.69414	22.389	22.146	22.84	-0.20198					16	14	2	0	0	0	0.024477	1	817	817		27.882	21.147	1	39944			81207	18531	56613	56707	90145	90145					-0.0026308475319183344
TSNPASSVI	9	Unmodified	_TSNPASSVI_					0	0	0		nc|ENSG00000175193|Q9H300-2|PARL	nc|ENSG00000175193|Q9H300-2|PARL	nc|ENSG00000175193|Q9H300-2|PARL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	438.227082	874.439611	0.19686	8.627E-05	1.5653	0.00068597	1.7622	0.00077224	438.2276455108092	22.493	0.45901	22.304	22.007	22.466	-0.18894	-0.086139	0.00052542	NaN	14.865	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36825			81208	18531	56613	56707							-0.0026308475319183344
TSPKRVAV	8	Unmodified	_TSPKRVAV_					0	0	0			REV__nc|ENSG00000184271|Q14863|POU6F1	REV__nc|ENSG00000184271|Q14863|POU6F1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.26983642578125	2	429.263802	856.513051	0.29144	0.0001251	-0.67367	-0.00028918	-0.38223	-0.00016408	429.26338461268057	41.199	0.91884	41.222	40.899	41.818	0.023006					68	25	4	0	0	0	0.027866	1	3595	3595		60.294	4.7898	1	4675100	+		81209	27651	56614	56708	90146	90146					0.07905508479939272
TSPLQKMH	8	Unmodified	_TSPLQKMH_					0	0	0			REV__ENST00000417788.5_1_22:22024636-22041216:+|nuORF	REV__ENST00000417788.5_1_22:22024636-22041216:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.78387451171875	2	471.247295	940.480036	0.15378	7.2468E-05	-3.8775	-0.0018273	-3.7237	-0.0017548	471.24525868509994	46.904	0.6221	46.808	46.539	47.161	-0.096649					45	16	4	0	0	0	0.027866	1	4523	4523		60.972	0	1	2373900	+		81210	32101	56615	56709	90147	90147					0.00741558365587025
TSPLRETL	8	Unmodified	_TSPLRETL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2395935058594	2	458.758549	915.502546	0.77268	0.00035448	-2.2116	-0.0010146	-1.4389	-0.00066012	458.7572372349939	33.346	0.7759	33.403	32.995	33.771	0.056568					25	20	3	0	0	0	0.027866	1	2346	2346		24.203	3.2558	1	170920			81211	2074	56616	56710	90148	90148					0.04141481034866956
TSPLTTSKTK	10	Unmodified	_TSPLTTSKTK_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3192138671875	2	532.303321	1062.59209	-0.5685	-0.00030261	3.9901	0.002124	3.4216	0.0018214	532.3053011129712	93.277	0.63496	93.284	92.971	93.606	0.0077286					35	14	3	0	0	0	0.03519	1	11802	11802		22.58	0	1	402440	+		81212	20396	56617	56711	90149	90149					0.06329690923575981
TSPLYFLFPSL	11	Unmodified	_TSPLYFLFPSL_					0	0	0		ENST00000538029.1_1_12:9102760-9162130:+|nuORF	ENST00000538029.1_1_12:9102760-9162130:+|nuORF	ENST00000538029.1_1_12:9102760-9162130:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2619934082031	3	428.900668	1283.68018	0.1034	4.4348E-05	1.2387	0.00053129	1.3421	0.00057564	429.2357779693508	90.134	0.27953	90.117	90.038	90.317	-0.016716					8	6	2	0	0	0	0.024748	1	11379	11379		13.508	0	1	122750			81213	16385	56618	56712	90150	90150					0.04968311514198831
TSPSGMNMAEL	11	Unmodified	_TSPSGMNMAEL_					0	0	0		nc|ENSG00000112561|P19484-2|TFEB;ENSG00000112561|ENST00000373033|TFEB	nc|ENSG00000112561|P19484-2|TFEB	nc|ENSG00000112561|P19484-2|TFEB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2548828125	2	569.249374	1136.4842	-0.31899	-0.00018159	-0.5004	-0.00028485	-0.81939	-0.00046644	569.2488369353786	62.933	0.79798	62.749	62.553	63.351	-0.18386					49	21	3	0	0	0	0.17999	1	7097	7097		101.25	1.8777	1	3207000			81214	3222	56619	56713	90151	90151					-0.07858764993670775
TSQDVLHSW	9	Unmodified	_TSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7564697265625	2	536.756538	1071.49852	-0.2771	-0.00014873	1.8571	0.00099681	1.58	0.00084808	536.7579584429603	53.278	0.86805	53.151	52.672	53.54	-0.12705					49	22	3	0	0	0	0.014738	3	5573	5573;5586;5594		163.15	47.657	1	3142600			81215	10175	56620	56714	90152;90153;90154	90152					-0.03436608458855517
TSQDVLHSW	9	Unmodified	_TSQDVLHSW_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.757080078125	2	536.756538	1071.49852	-0.72924	-0.00039142	2.1048	0.0011298	1.3755	0.00073833	536.7578178892649	53.312	0.73311	53.122	52.831	53.564	-0.18982					54	19	4	0	0	0	0.041068	3	5567	5567;5578;5590		132.76	52.303	1	3398900			81216	10175	56620	56714	90155;90156;90157	90155					-0.03436608458855517
TSQLGSDHEN	10	Unmodified	_TSQLGSDHEN_					0	0	0		ENST00000481421.1_1_3:156431675-156432128:-|nuORF;ENSG00000169519|ENST00000407364|METTL15	ENST00000481421.1_1_3:156431675-156432128:-|nuORF	ENST00000481421.1_1_3:156431675-156432128:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2444458007812	2	544.236167	1086.45778	-0.046514	-2.5315E-05	-3.3212	-0.0018075	-3.3677	-0.0018328	544.2341046264113	67.933	1.14	67.7	67.217	68.357	-0.23376					36	27	2	0	0	0	0.03519	1	7803	7803		35.152	8.4591	1	73142			81217	7946	56621	56715	90158	90158					-0.08198994569124807
TSQQGRPGR	9	Unmodified	_TSQQGRPGR_					0	0	0		SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|65|2|anti-sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|73|3|anti-sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|48|2|anti-sense	SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|65|2|anti-sense	SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|65|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7795104980469	2	493.759946	985.50534	0.67743	0.00033449	3.5842	0.0017697	4.2616	0.0021042	493.7612461019097	58.529	0.77137	58.529	58.228	58.999	0					21	20	2	0	0	0	0.021816	1	6595	6595		85.161	5.4482	1	66495			81218	38004	56622	56716	90159	90159					0.012007492123871089
TSQQSLIPLL	10	Unmodified	_TSQQSLIPLL_					0	0	0			REV__ENSG00000134061|ENST00000256447|CD180	REV__ENSG00000134061|ENST00000256447|CD180	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3219604492188	2	550.321514	1098.62847	0.46749	0.00025727	-1.4855	-0.00081752	-1.018	-0.00056025	550.3207980161034	62.976	0.94212	63.03	62.719	63.662	0.054104					58	24	4	0	0	0	0.54901	1	7261	7261		82.75	9.8712	1	3725600	+		81219	23416	56623	56717	90160	90160					0.08310567820285542
TSQTTSLIT	9	Unmodified	_TSQTTSLIT_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.251953125	2	476.253297	950.492041	-0.12116	-5.7701E-05	1.1079	0.00052763	0.98671	0.00046993	476.25358324425764	27.161	1.1073	26.919	26.488	27.596	-0.24217					53	25	3	0	0	0	0.31037	1	1482	1482		74.255	4.6274	1	1567700			81220	769	56624	56718	90161	90161					0.014814535897698988
TSRRKAGHQFG	11	Unmodified	_TSRRKAGHQFG_					0	0	0		ENST00000484203.5_1_2:86348636-86354493:+|nuORF;ENSG00000132300|ENST00000254630|PTCD3;ENST00000480102.1_1_2:86348636-86354336:+|nuORF	ENST00000484203.5_1_2:86348636-86354493:+|nuORF	ENST00000484203.5_1_2:86348636-86354493:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.5594177246094	3	415.55841	1243.6534	3.4491	0.0014333	-0.51838	-0.00021542	2.9307	0.0012179	415.5580995348037	18.898	1.0836	18.962	18.649	19.732	0.063307					40	21	3	0	0	0	1.0788	1	306	306		17.167	0	1	127060			81221	4588	56625	56719	90162	90162					0.04132060466213261
TSSGFIIMSL	10	Unmodified	_TSSGFIIMSL_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.274169921875	2	528.275718	1054.53688	-0.65496	-0.000346	-3.6385	-0.0019222	-4.2935	-0.0022681	528.2738695912601	92.008	2.8556	91.999	91.326	94.181	-0.0082932					232	68	6	0	0	0	0.62431	1	11737	11737		74.255	5.4682	1	52333000			81222	3763	56626	56720	90163	90163					0.011795611314482812
TSSGFIIMSL	10	Unmodified	_TSSGFIIMSL_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2733154296875	2	528.275718	1054.53688	-1.7092	-0.00090294	-1.6623	-0.00087815	-3.3715	-0.0017811	528.2746774467289	91.967	1.0034	91.818	91.439	92.442	-0.1487					59	23	3	0	0	0	0.85955	1	11289	11289		56.721	1.9447	1	1513500			81223	3763	56626	56720	90164	90164					0.011795611314482812
TSSHQQRL	8	Unmodified	_TSSHQQRL_					0	0	0		ENST00000521249.1_1_14:102697414-102697822:-|nuORF	ENST00000521249.1_1_14:102697414-102697822:-|nuORF	ENST00000521249.1_1_14:102697414-102697822:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7922058105469	2	478.749047	955.483542	0.50872	0.00024355	3.6885	0.0017659	4.1972	0.0020094	478.75045178698997	50.683	0.37002	50.502	50.39	50.76	-0.18071					15	9	2	0	0	0	0.027866	1	5190	5190		49.442	6.9671	1	133200			81224	15999	56627	56721	90165	90165					0.004019444638174718
TSSKNIQNYRK	11	Unmodified	_TSSKNIQNYRK_					0	0	0			REV__ENST00000216968.4_1_20:33764858-33765056:+|nuORF	REV__ENST00000216968.4_1_20:33764858-33765056:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.89654541015625	3	446.908997	1337.70516	-0.37507	-0.00016762	0.5427	0.00024254	0.16763	7.4914E-05	446.9082852904747	24.231	0.21742	24.231	24.08	24.297	0					6	4	2	0	0	0	0.024816	1	1039	1039		21.78	8.8229	1	14309	+		81225	29327	56628	56722	90166	90166					0.04981759369434258
TSSKPDPSQW	10	Unmodified	_TSSKPDPSQW_					0	0	0		nc|ENSG00000147526|O75410-7|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	nc|ENSG00000147526|O75410-7|TACC1	nc|ENSG00000147526|O75410-7|TACC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.766845703125	2	566.767103	1131.51965	-0.55964	-0.00031719	0.76454	0.00043331	0.20489	0.00011613	566.7673284814821	39.33	0.70295	39.165	38.795	39.498	-0.16458					49	18	4	0	0	0	0.20643	2	3332	3319;3332		120.27	29.672	1	2837500			81226	18364	56629	56723	90167;90168	90168					-0.0408464315000856
TSSKPDPSQW	10	Unmodified	_TSSKPDPSQW_					0	0	0		nc|ENSG00000147526|O75410-7|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	nc|ENSG00000147526|O75410-7|TACC1	nc|ENSG00000147526|O75410-7|TACC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.76708984375	2	566.767103	1131.51965	-0.40733	-0.00023086	0.66124	0.00037477	0.25391	0.00014391	566.7671305831327	39.448	0.75413	39.225	38.789	39.543	-0.22311					43	19	3	0	0	0	0.03873	2	3337	3325;3337		150.81	46.797	1	2582800			81227	18364	56629	56723	90169;90170	90170					-0.0408464315000856
TSSKPDPSQW	10	Unmodified	_TSSKPDPSQW_					0	0	0		nc|ENSG00000147526|O75410-7|TACC1;ENST00000522955.5_1_8:38663104-38684943:+|nuORF;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	nc|ENSG00000147526|O75410-7|TACC1	nc|ENSG00000147526|O75410-7|TACC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.76708984375	2	566.767103	1131.51965	-0.065294	-3.7007E-05	0.08803	4.9893E-05	0.022736	1.2886E-05	566.7669182336027	39.419	0.78393	39.194	38.806	39.59	-0.2257					54	20	4	0	0	0	0.44183	1	3318	3318		94.409	11.659	1	2636300			81228	18364	56629	56723	90171	90171					-0.0408464315000856
TSSKPRGPV	9	Unmodified	_TSSKPRGPV_					0	0	0		ENST00000522899.1_1_8:144461534-144462449:+|nuORF;ENSG00000158106|ENST00000289013|RHPN1;ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.7644348144531	2	464.764166	927.513779	-0.64183	-0.0002983	-0.48559	-0.00022569	-1.1274	-0.00052398	464.76391900973266	33.571	0.91515	33.571	33.135	34.05	0					73	24	5	0	0	0	0.50848	1	2418	2418		58.782	2.0609	1	16958000			81229	6645	56630	56724	90172	90172					0.04712303128997064
TSSKPRGPV	9	Unmodified	_TSSKPRGPV_					0	0	0		ENST00000522899.1_1_8:144461534-144462449:+|nuORF;ENSG00000158106|ENST00000289013|RHPN1;ENST00000522335.5_1_8:144462155-144464818:+|nuORF	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7661437988281	2	464.764166	927.513779	-0.47621	-0.00022133	-0.57139	-0.00026556	-1.0476	-0.00048689	464.76385631251856	33.461	1.0306	33.467	32.85	33.881	0.0066261					72	27	5	0	0	0	0.34489	2	2381	2381;2390		69.628	7.5202	1	16599000			81230	6645	56630	56724	90173;90174	90173					0.04712303128997064
TSSLNRHRRR	10	Unmodified	_TSSLNRHRRR_					0	0	0			REV__ENSG00000159166|ENST00000391967|LAD1	REV__ENSG00000159166|ENST00000391967|LAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	428.2618408203125	3	428.244826	1281.71265	0.50146	0.00021475	1.9562	0.00083772	2.4576	0.0010525	428.2455131489962	90.165	0.1584	90.178	90.082	90.24	0.013443					5	3	2	0	0	0	0.03519	1	11320	11320		20.03	4.0237	1	200230	+		81231	25238	56631	56725	90175	90175					0.0830595648039889
TSSLWKDK	8	Unmodified	_TSSLWKDK_					0	0	0		ENSG00000164867|ENST00000297494|NOS3;NOS3|p.G440Afs*64|1|0.52|ENSG00000164867|chr7:151001310-151001310|G/-|frameshift_variant;nc|ENSG00000164867|P29474-3|NOS3;nc|ENSG00000164867|P29474-2|NOS3	ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.758056640625	2	482.758549	963.502546	0.096882	4.6771E-05	-0.027475	-1.3264E-05	0.069407	3.3507E-05	482.75837451346143	49.416	0.90714	49.315	48.918	49.825	-0.1008					54	23	4	0	0	0	1.0009	1	4968	4968		37.159	0	1	2199300			81232	7330	56632	56726	90176	90176					0.01933481034848228
TSSRPLPQ	8	Unmodified	_TSSRPLPQ_					0	0	0		ENST00000482692.1_1_7:28449401-28450235:+|nuORF	ENST00000482692.1_1_7:28449401-28450235:+|nuORF	ENST00000482692.1_1_7:28449401-28450235:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2427978515625	2	443.243067	884.47158	-0.6829	-0.00030269	0.37576	0.00016655	-0.30715	-0.00013614	443.2432481723972	38.172	1.4344	38.089	37.636	39.071	-0.082516					105	39	4	0	0	0	0.59392	1	3175	3175		76.847	2.8719	1	21001000			81233	15265	56633	56727	90177	90177					0.024723277206248895
TSSSHTLTY	9	Unmodified	_TSSSHTLTY_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.73529052734375	2	498.735271	995.45599	-0.26288	-0.00013111	-0.1313	-6.5486E-05	-0.39418	-0.00019659	498.7351591836588	32.923	0.76996	32.692	32.423	33.193	-0.23107					57	18	5	0	0	0	0.11848	3	2298	2298;2309;2321		106.42	40.612	1	4404300			81234	6540	56634	56728	90178;90179;90180	90178					-0.041920035870930406
TSSSHTLTY	9	Unmodified	_TSSSHTLTY_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.735107421875	2	498.735271	995.45599	0.036434	1.8171E-05	-0.47822	-0.0002385	-0.44178	-0.00022033	498.73497590892356	32.993	0.75847	32.792	32.489	33.247	-0.20019					55	18	5	0	0	0	0.11848	3	2319	2299;2307;2319		106.42	32.44	1	4484400			81235	6540	56634	56728	90181;90182;90183	90183					-0.041920035870930406
TSSSHTLTY	9	Unmodified	_TSSSHTLTY_					0	0	0		nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000563753.1_1_15:73884305-73925556:-|nuORF	nc|ENSG00000156642|Q9Y639-3|NPTN	nc|ENSG00000156642|Q9Y639-3|NPTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.73529052734375	2	498.735271	995.45599	-0.6651	-0.00033171	0.1311	6.5387E-05	-0.53399	-0.00026632	498.7352802775386	32.826	0.87999	32.66	32.315	33.195	-0.16565					56	21	4	0	0	0	0.049585	3	2265	2265;2278;2290		128.86	45.574	1	4657000			81236	6540	56634	56728	90184;90185;90186	90184					-0.041920035870930406
TSSSLRLSW	9	Unmodified	_TSSSLRLSW_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7583618164062	2	518.774731	1035.53491	1.0226	0.00053048	-0.073212	-3.798E-05	0.94936	0.0004925	518.7751394542133	59.79	0.46786	59.593	59.297	59.765	-0.19742					17	11	2	0	0	0	0.024466	1	6621	6621		39.253	0	1	210410			81237	7828	56635	56729	90187	90187					0.018562684378366612
TSSVGSKFP	9	Unmodified	_TSSVGSKFP_					0	0	0		nc|ENSG00000010671|Q06187-2|BTK;ENSG00000010671|ENST00000308731|BTK;ENST00000470069.1_1_X:100608145-100608969:-|nuORF	nc|ENSG00000010671|Q06187-2|BTK	nc|ENSG00000010671|Q06187-2|BTK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.2397766113281	2	455.23745	908.460347	0.038356	1.7461E-05	-0.98909	-0.00045027	-0.95073	-0.00043281	455.23706671930125	102.8	0.63968	102.8	102.57	103.21	0					36	15	3	0	0	0	0.96322	1	13162	13162		27.882	1.1893	1	1457300			81238	880	56636	56730	90188	90188					0.002455056264693667
TSTHALTLID	10	Unmodified	_TSTHALTLID_					0	0	0			REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF	REV__ENST00000457750.1_1_3:195341833-195346985:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.80078125	2	536.287671	1070.56079	-0.8587	-0.00046051	2.2908	0.0012285	1.4321	0.00076802	536.2887427698682	55.049	0.21962	54.902	54.837	55.057	-0.14609					8	5	2	0	0	0	0.03519	1	5905	5905		19.997	0.6368	1	90843	+		81239	27064	56637	56731	90189	90189					0.028331178894632103
TSTLFNDQS	9	Unmodified	_TSTLFNDQS_					0	0	0			REV__ENSG00000131043|ENST00000320849|AAR2	REV__ENSG00000131043|ENST00000320849|AAR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2846984863281	2	506.732729	1011.4509	-0.49249	-0.00024956	1.0991	0.00055693	0.60656	0.00030736	506.73332939893345	30.882	0.45698	30.893	30.627	31.084	0.011797					13	10	2	0	0	0	0.024447	1	2000	2000		25.574	3.6142	1	63794	+		81240	23183	56638	56732	90190	90190					-0.0543630744971324
TSTMTRGSPL	10	Unmodified	_TSTMTRGSPL_					0	0	0			REV__ENST00000392474.6_1_12:121675701-121675980:-|nuORF	REV__ENST00000392474.6_1_12:121675701-121675980:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7654418945312	2	525.766049	1049.51754	-1.605	-0.00084386	1.1016	0.00057919	-0.50341	-0.00026468	525.7665353830832	31.066	1.3262	31.066	30.343	31.669	0					75	31	4	0	0	0	0.91678	1	2031	2031		52.937	1.744	1	3271600	+		81241	31606	56639	56733	90191	90191					-0.005233951594391328
TSTPCERKI	9	Unmodified	_TSTPCERKI_					0	0	0			REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A	REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3040771484375	2	517.768591	1033.52263	-0.54909	-0.0002843	0.87242	0.00045171	0.32332	0.00016741	517.7687403238182	60.395	0.59752	60.219	59.885	60.483	-0.1761					33	14	3	0	0	0	0.024381	1	6726	6726		37.159	8.0096	1	826890	+		81242	19831	56640	56734	90192	90192					0.007209087031696981
TSTTPGLRSM	10	Unmodified	_TSTTPGLRSM_					0	0	0		ENST00000559826.1_1_15:70350468-70351103:-|nuORF;ENST00000557815.1_1_15:70350468-70350999:-|nuORF;nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726|TLE3;nc|ENSG00000140332|Q04726-4|TLE3	ENST00000559826.1_1_15:70350468-70351103:-|nuORF	ENST00000559826.1_1_15:70350468-70351103:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7659912109375	2	525.766049	1049.51754	0.20596	0.00010828	-0.54448	-0.00028627	-0.33852	-0.00017798	525.7656434585334	33.361	3.29	33.418	31.555	34.844	0.056572					208	84	3	0	0	0	0.88978	1	2347	2347		54.722	3.3869	1	1622500			81243	5401	56641	56735	90193	90193					-0.005233951594618702
TSTWPNPLP	9	Unmodified	_TSTWPNPLP_					0	0	0			REV__ENSG00000175520|ENST00000311659|UBQLN3	REV__ENSG00000175520|ENST00000311659|UBQLN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.77978515625	2	506.758549	1011.50255	-0.83904	-0.00042519	-3.1432	-0.0015929	-3.9823	-0.002018	506.75683801644124	38.38	0.49784	38.2	38.002	38.5	-0.17929					29	13	3	0	0	0	0.024477	1	3206	3206		20.947	0	1	736230	+		81244	26957	56642	56736	90194	90194					-0.0027451896515913177
TSVKAGEAF	9	Unmodified	_TSVKAGEAF_					0	0	0			REV__ENST00000454219.1_1_1:100435257-100435413:-|nuORF	REV__ENST00000454219.1_1_1:100435257-100435413:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.2374267578125	2	455.23745	908.460347	0.3198	0.00014559	-1.0462	-0.00047625	-0.72635	-0.00033066	455.2368857873741	103.02	0.69856	102.85	102.5	103.2	-0.17034					36	16	3	0	0	0	0.89441	1	12792	12792		32.812	2.3088	1	1771700	+		81245	32757	56643	56737	90195	90195					0.002455056264693667
TSVMFAKKE	9	Oxidation (M)	_TSVM(Oxidation (M))FAKKE_		TSVM(1)FAKKE		TSVM(55)FAKKE	0	0	1			REV__ENST00000473638.5_1_22:39708982-39709710:-|nuORF	REV__ENST00000473638.5_1_22:39708982-39709710:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.7736206054688	2	528.773342	1055.53213	-0.37144	-0.00019641	3.926	0.002076	3.5546	0.0018796	528.7753632166033	31.821	0.82947	31.89	31.567	32.396	0.068962					52	20	4	0	0	0	0.56934	1	2101	2101		54.776	6.8607	1	2722600	+		81246	33242	56644	56738	90196	90196		907			0.00658676988678053
TSVMRLLSK	9	Unmodified	_TSVMRLLSK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.8271484375	2	517.804977	1033.5954	-0.15022	-7.7783E-05	-3.319	-0.0017186	-3.4692	-0.0017964	517.8033233008932	34.692	0.61046	34.485	34.201	34.812	-0.20696					26	14	3	0	0	0	0.024466	1	2616	2616		31.53	0	1	344380			81247	3431	56645	56739	90197	90197					0.07994662496594174
TSVPDHVVW	9	Unmodified	_TSVPDHVVW_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.2638549804688	2	520.263999	1038.51345	-0.88542	-0.00046065	0.41175	0.00021422	-0.47366	-0.00024643	520.2642248947383	57.477	1.1295	57.299	56.665	57.795	-0.17775					87	29	4	0	0	0	0.013018	6	6263	6254;6263;6275;6286;6298;6311		173.85	91.608	1	18864000			81248	5535	56646	56740	90198;90199;90200;90201;90202;90203	90199					-0.0042711659086762666
TSVPDHVVW	9	Unmodified	_TSVPDHVVW_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.2640380859375	2	520.263999	1038.51345	0.3839	0.00019973	-0.95808	-0.00049845	-0.57418	-0.00029872	520.2635296711701	57.502	1.1872	57.3	56.672	57.859	-0.20209					86	31	4	0	0	0	0.013018	6	6280	6259;6268;6280;6291;6303;6318		173.85	99.874	1	20532000			81249	5535	56646	56740	90204;90205;90206;90207;90208;90209	90206					-0.0042711659086762666
TSVPDHVVW	9	Unmodified	_TSVPDHVVW_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185885|ENST00000408968|IFITM1;ENSG00000185201|ENST00000616316|IFITM2;ENST00000505282.1_1_4:66959972-66960239:+|nuORF	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.2645263671875	2	520.263999	1038.51345	-0.454	-0.0002362	-0.077061	-4.0092E-05	-0.53106	-0.00027629	520.263965971501	57.603	1.9786	57.369	56.805	58.784	-0.23363					101	50	4	0	0	0	0.013018	6	6287	6263;6274;6287;6298;6310;6325		173.85	104.22	1	19424000			81250	5535	56646	56740	90210;90211;90212;90213;90214;90215	90212					-0.0042711659086762666
TSVVAILSI	9	Unmodified	_TSVVAILSI_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	451.7803649902344	2	451.781493	901.548434	1.0465	0.00047279	-1.2373	-0.00055901	-0.19084	-8.622E-05	451.78094066128494	78.149	0.86021	77.956	77.604	78.464	-0.1921					43	20	3	0	0	0	0.06122	1	9649	9649		124.59	33.818	1	1003900	+		81251	33749	56647	56741	90216	90216					0.09372126217101595
TSVVAILSI	9	Unmodified	_TSVVAILSI_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.781493	901.548434	0.19445	8.7847E-05	-0.13292	-6.0049E-05	0.061529	2.7798E-05	451.7813137775064	78.033	0.81864	78.033	77.712	78.531	0	0.00087271	1.8542E-05	NaN	124.59	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049900	+		81252	33749	56647	56741							0.09372126217101595
TSVVAILSI	9	Unmodified	_TSVVAILSI_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	451.781493	901.548434	1.0465	0.00047279	-1.2373	-0.00055901	-0.19084	-8.622E-05	451.78094066128494	78.149	0.86021	77.956	77.604	78.464	-0.1921	-0.076064	-0.00097938	NaN	124.59	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1003900	+		81253	33749	56647	56741							0.09372126217101595
TSVVAILSI	9	Unmodified	_TSVVAILSI_					0	0	0			REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	REV__ENST00000492923.1_1_9:5462961-5465689:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	451.781493	901.548434	-0.27273	-0.00012322	0.44184	0.00019961	0.16911	7.6399E-05	451.7815879956312	78.092	0.7418	78.108	77.78	78.522	0.015907	0.075191	0.00053787	NaN	124.59	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1124300	+		81254	33749	56647	56741							0.09372126217101595
TSVVRQCP	8	Unmodified	_TSVVRQCP_					0	0	0			REV__nc|ENSG00000095970|Q9NZC2-2|TREM2	REV__nc|ENSG00000095970|Q9NZC2-2|TREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	444.2686462402344	2	445.231645	888.448736	-0.30562	-0.00013607	0.05241	2.3335E-05	-0.25321	-0.00011274	445.2315372224936	28.649	1.0075	28.645	28.078	29.085	-0.0042019					37	23	2	0	0	0	0.027866	1	1679	1679		38.806	12.01	1	187310	+		81255	36511	56648	56742	90217	90217					4.985331497664447E-05
TSVVYGQQ	8	Unmodified	_TSVVYGQQ_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.2742919921875	2	441.2218	880.429047	0.12011	5.2997E-05	-2.7889	-0.0012305	-2.6688	-0.0011775	441.22043426332255	42.743	0.50507	42.743	42.497	43.002	0					22	13	2	0	0	0	0.027866	1	3962	3962		42.396	19.354	1	257010	+		81256	27536	56649	56743	90218	90218					-0.015950674076179894
TSVYQELLEQE	11	Unmodified	_TSVYQELLEQE_					0	0	0			REV__ENST00000496184.1_1_7:1468309-1476487:-|nuORF	REV__ENST00000496184.1_1_7:1468309-1476487:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	446.89654541015625	3	446.885635	1337.63508	-0.3821	-0.00017076	-3.1273	-0.0013975	-3.5094	-0.0015683	446.88433030618205	24.259	0.17477	24.259	24.166	24.341	0					5	3	2	0	0	0	0.024816	1	1039	1039		16.53	0	1	14065	+		81257	25811	56650	56744	90219	90219					-0.020235838096596126
TSYAALLRI	9	Unmodified	_TSYAALLRI_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-4|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.2979736328125	2	504.297842	1006.58113	-0.054928	-2.77E-05	-0.88891	-0.00044827	-0.94383	-0.00047597	504.2972000121617	61.882	0.77148	61.655	61.415	62.187	-0.22663					79	20	5	0	0	0	0.83071	1	7170	7170		37.159	0	1	14914000			81258	6128;16187	56651	56745	90220	90220					0.0781033333993264
TSYAALLRI	9	Unmodified	_TSYAALLRI_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-4|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.29779052734375	2	504.297842	1006.58113	-0.10118	-5.1026E-05	0.061054	3.0789E-05	-0.040128	-2.0237E-05	504.2977977908085	61.853	0.90803	61.639	61.375	62.283	-0.21375					76	22	4	0	0	0	0.39228	1	6936	6936		66.429	6.1353	1	5668100			81259	6128;16187	56651	56745	90221	90221					0.0781033333993264
TSYAALLRI	9	Unmodified	_TSYAALLRI_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-4|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2977600097656	2	504.297842	1006.58113	-0.93965	-0.00047387	0.75566	0.00038108	-0.18399	-9.2787E-05	504.29810868059883	61.803	1.0546	61.625	61.329	62.383	-0.17781					91	26	5	0	0	0	0.4752	1	6948	6948		60.972	9.6365	1	4994100			81260	6128;16187	56651	56745	90222	90222					0.0781033333993264
TSYAALLRI	9	Unmodified	_TSYAALLRI_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-4|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5;ENST00000528727.5_1_11:99426939-100095567:+|nuORF	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.29766845703125	2	504.297842	1006.58113	-0.33973	-0.00017132	0.10589	5.34E-05	-0.23383	-0.00011792	504.2978054810556	61.944	0.94502	61.687	61.383	62.328	-0.25725					76	23	4	0	0	0	0.35646	1	6930	6930		68.787	2.8894	1	4849600			81261	6128;16187	56651	56745	90223	90223					0.0781033333993264
TSYKLLCKV	9	Unmodified	_TSYKLLCKV_					0	0	0			REV__ENSG00000163257|ENST00000382247|DCAF16	REV__ENSG00000163257|ENST00000382247|DCAF16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.8232421875	2	527.801903	1053.58925	-0.76695	-0.0004048	0.4079	0.00021529	-0.35905	-0.00018951	527.8016984262772	68.364	0.22598	68.364	68.256	68.482	0					6	5	2	0	0	0	0.024447	1	8183	8183		25.574	0	1	108910	+		81262	25546	56652	56746	90224	90224					0.06460144265065537
TSYKPLFLVS	10	Unmodified	_TSYKPLFLVS_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.7703857421875	2	577.826432	1153.63831	0.19233	0.00011113	1.3075	0.00075551	1.4998	0.00086665	578.3284423709194	51.851	0.18027	51.667	51.598	51.778	-0.18404					5	4	2	0	0	0	0.03519	1	5355	5355		64.207	14.671	1	42854	+		81263	23875	56653	56747	90225	90225					0.06763755825659246
TSYRIGDTW	9	Unmodified	_TSYRIGDTW_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-2|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2976684570312	2	549.764363	1097.51417	-0.08727	-4.7978E-05	-0.14676	-8.0683E-05	-0.23403	-0.00012866	549.7641551985006	54.6	0.69745	54.368	54.087	54.784	-0.2312					55	19	4	0	0	0	0.024156	1	5827	5827		58.246	0	1	2532400			81264	3442	56654	56748	90226	90226					-0.03068321941805152
TSYRLTLDI	9	Unmodified	_TSYRLTLDI_					0	0	0		APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.I2641Sfs*26|1|0.14|ENSG00000084674|chr2:21008947-21008947|T/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3321533203125	2	541.298039	1080.58152	-0.71047	-0.00038458	-3.337	-0.0018063	-4.0474	-0.0021909	541.2954447879183	67.478	0.48157	67.19	67.03	67.511	-0.28834					25	11	3	0	0	0	0.02435	1	8048	8048		34.173	0	1	347600			81265	1774;107	56655	56749	90227	90227					0.04445708269145143
TSYSYPSLL	9	Unmodified	_TSYSYPSLL_					0	0	0			REV__ENSG00000118271|ENST00000237014|TTR	REV__ENSG00000118271|ENST00000237014|TTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.3138427734375	2	515.758215	1029.50188	1.241	0.00064006	-1.4682	-0.00075724	-0.22719	-0.00011718	515.7578757736211	98.431	0.43455	98.307	98.069	98.504	-0.12413					14	9	2	0	0	0	0.024412	1	12202	12202		24.203	1.1603	1	42005	+		81266	22396	56656	56750	90228	90228					-0.011693584048316552
TSYVLSLCI	9	Carbamidomethyl (C)	_TSYVLSLC(Carbamidomethyl (C))I_	TSYVLSLC(1)I		TSYVLSLC(85)I		0	1	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.2738647460938	2	528.275718	1054.53688	-0.65496	-0.000346	-3.6385	-0.0019222	-4.2935	-0.0022681	528.2738695912601	92.008	2.8556	91.999	91.326	94.181	-0.0082932					232	68	6	0	0	0	0.22754	1	11591	11591		85.359	11.104	1	52333000	+		81267	22952	56657	56751	90229	90229	301				0.011795611314482812
TTAAQCKTAV	10	Carbamidomethyl (C)	_TTAAQC(Carbamidomethyl (C))KTAV_	TTAAQC(1)KTAV		TTAAQC(120)KTAV		0	1	0			REV__ENSG00000114124|ENST00000682958|GRK7	REV__ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.7657470703125	2	525.766049	1049.51754	-0.5916	-0.00031104	0.18715	9.84E-05	-0.40445	-0.00021265	525.7660322936745	30.996	1.033	31.007	30.709	31.742	0.011799					72	24	6	0	0	0	0.23335	1	2013	2013		116.9	29.149	1	3318100	+		81268	22107	56658	56752	90230	90230	286				-0.005233951594618702
TTAIAPIIKG	10	Unmodified	_TTAIAPIIKG_					0	0	0			REV__ENSG00000033178|ENST00000322244|UBA6;REV__nc|ENSG00000130985|P22314-2|UBA1	REV__ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.7685546875	2	492.808042	983.601532	-0.19167	-9.4456E-05	-1.3465	-0.00066359	-1.5382	-0.00075804	492.80715439745273	60.269	0.49706	60.072	59.765	60.262	-0.19742					16	12	2	0	0	0	0.03519	1	6687	6687		32.812	25.122	1	191370	+		81269	20054;23173	56659	56753	90231	90231					0.10907503999760593
TTAPFKIPKT	10	Unmodified	_TTAPFKIPKT_					0	0	0		ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.2608032226562	2	552.326599	1102.63865	-0.5725	-0.00031621	-0.99192	-0.00054786	-1.5644	-0.00086407	552.3267563468733	45.099	0.67083	44.888	44.514	45.185	-0.21109					39	17	3	0	0	0	0.03519	1	4225	4225		21.686	0	1	222410			81270	1749	56660	56754	90232	90232					0.09143175545523263
TTAPLGRALL	10	Unmodified	_TTAPLGRALL_					0	0	0		ENST00000455661.5_1_10:129796851-129797109:+|nuORF	ENST00000455661.5_1_10:129796851-129797109:+|nuORF	ENST00000455661.5_1_10:129796851-129797109:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.8113098144531	2	506.811116	1011.60768	-0.18697	-9.4759E-05	-0.59738	-0.00030276	-0.78435	-0.00039752	506.8109227453703	54.675	1.2537	54.525	54.156	55.409	-0.15036					111	35	5	0	0	0	0.88896	1	5948	5948		54.776	3.4409	1	35785000			81271	14586	56661	56755	90233	90233					0.10234022231293238
TTAPLGRALL	10	Unmodified	_TTAPLGRALL_					0	0	0		ENST00000455661.5_1_10:129796851-129797109:+|nuORF	ENST00000455661.5_1_10:129796851-129797109:+|nuORF	ENST00000455661.5_1_10:129796851-129797109:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.811279296875	2	506.811116	1011.60768	0.53467	0.00027098	-1.3459	-0.00068214	-0.81128	-0.00041116	506.81053479143134	54.415	1.2551	54.513	54.077	55.332	0.098011					114	35	5	0	0	0	0.74632	1	5896	5896		64.207	0.901	1	38735000			81272	14586	56661	56755	90234	90234					0.10234022231293238
TTASIRLLW	9	Unmodified	_TTASIRLLW_					0	0	0			REV__ENSG00000115827|ENST00000375255|DCAF17	REV__ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2908325195312	2	530.811116	1059.60768	-1.3008	-0.0006905	0.47755	0.00025349	-0.82328	-0.00043701	530.811366539761	61.561	0.92776	61.383	60.995	61.923	-0.17781					54	22	4	0	0	0	0.024344	1	6905	6905		64.207	3.2353	1	1666600	+		81273	22233	56662	56756	90235	90235					0.0802602223127451
TTASSPIGLV	10	Unmodified	_TTASSPIGLV_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.2818298339844	2	473.266207	944.517862	-1.2054	-0.00057049	0.2495	0.00011808	-0.95594	-0.00045241	473.2659712872216	65.223	0.90353	65.02	64.778	65.681	-0.20254					50	21	3	0	0	0	0.03519	1	7490	7490		63.306	27.688	1	488910	+		81274	24554	56663	56757	90236	90236					0.043383478320379254
TTATTALPTF	10	Unmodified	_TTATTALPTF_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2698364257812	2	512.27149	1022.52843	0.53902	0.00027612	-1.7123	-0.00087719	-1.1733	-0.00060106	512.2704614466785	106.94	0.87857	106.78	106.42	107.3	-0.15771					129	36	5	0	0	0	1.1166	1	13334	13334		30.504	1.3541	1	5030900	+		81275	26587	56664	56758	90237	90237					0.018063304864767815
TTAVEVAQRW	10	Unmodified	_TTAVEVAQRW_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.280029296875	2	580.806562	1159.59857	-0.75666	-0.00043947	0.47536	0.00027609	-0.2813	-0.00016338	580.8067385972349	52.205	0.68703	52.086	51.833	52.52	-0.11876					49	17	4	0	0	0	0.03519	1	5395	5395		114.89	18.847	1	1328000			81276	4386	56665	56759	90238	90238					0.02515628874948561
TTAVEVAQRW	10	Unmodified	_TTAVEVAQRW_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.281494140625	2	580.806562	1159.59857	-1.677	-0.000974	1.2212	0.00070929	-0.45577	-0.00026471	580.8072065674129	52.463	0.64899	52.194	51.944	52.593	-0.26904					45	16	4	0	0	0	0.03519	1	5429	5429		104.01	20.726	1	1454000			81277	4386	56665	56759	90239	90239					0.02515628874948561
TTAVEVAQRW	10	Unmodified	_TTAVEVAQRW_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.2813110351562	2	580.806562	1159.59857	-0.63404	-0.00036825	0.040924	2.3769E-05	-0.59311	-0.00034448	580.8065768283985	52.277	0.77826	52.093	51.778	52.557	-0.18404					44	19	3	0	0	0	0.03519	1	5410	5410		61.691	10.499	1	1439700			81278	4386	56665	56759	90240	90240					0.02515628874948561
TTAVTDALAVL	11	Unmodified	_TTAVTDALAVL_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.287109375	2	537.805697	1073.59684	-0.70996	-0.00038182	4.0189	0.0021614	3.3089	0.0017796	537.8080812328894	91.752	0.55814	91.628	91.201	91.759	-0.12341					17	12	2	0	0	0	0.024732	1	11256	11256		32.812	0	1	32185	+		81279	21417	56666	56760	90241	90241					0.06298575066330159
TTCANPPSL	9	Unmodified	_TTCANPPSL_					0	0	0		ENSG00000134061|ENST00000256447|CD180	ENSG00000134061|ENST00000256447|CD180	ENSG00000134061|ENST00000256447|CD180	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2301025390625	2	452.21566	902.416767	-0.23619	-0.00010681	-3.374	-0.0015258	-3.6102	-0.0016326	452.21419028127	26.835	0.33155	26.822	26.579	26.911	-0.012983					11	7	2	0	0	0	0.017891	1	1377	1377		108.09	11.897	1	34132			81280	4750	56667	56761	90242	90242					-0.03834427142305685
TTCPEPGCPAP	11	Unmodified	_TTCPEPGCPAP_					0	0	0		ENSG00000054938|ENST00000376332|CHRDL2;nc|ENSG00000054938|Q6WN34-2|CHRDL2	ENSG00000054938|ENST00000376332|CHRDL2	ENSG00000054938|ENST00000376332|CHRDL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3117065429688	2	536.725535	1071.43652	-0.5333	-0.00028624	1.0884	0.00058415	0.55507	0.00029792	536.7255498883115	34.321	0.1883	34.316	34.225	34.414	-0.0045624					6	4	2	0	0	0	0.024743	1	2523	2523		20.947	0	1	35407			81281	1179	56668	56762	90243	90243					-0.09634419193866961
TTDEDEESSG	10	Unmodified	_TTDEDEESSG_					0	0	0			REV__ENSG00000237452|ENST00000457052|MEIOSIN	REV__ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2142333984375	2	535.19383	1068.37311	-0.60584	-0.00032424	-3.8938	-0.002084	-4.4997	-0.0024082	535.1912982621277	29.795	0.24952	29.646	29.542	29.792	-0.14952					12	5	3	0	0	0	0.03519	1	1839	1839		15.642	0	1	119190	+		81282	28943	56669	56763	90244	90244					-0.15834409896410762
TTDELEKLLY	10	Unmodified	_TTDELEKLLY_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	612.8226318359375	2	612.821544	1223.62853	0.39926	0.00024467	-0.16628	-0.0001019	0.23298	0.00014277	612.8210902783304	71.027	0.84895	70.813	70.563	71.412	-0.21425					50	19	4	0	0	0	0.65479	1	8281	8281		70.816	29.39	1	1080100			81283	9461	56670	56764	90245	90245					0.025665230296226582
TTDFIFNLY	9	Unmodified	_TTDFIFNLY_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.2794799804688	2	567.279315	1132.54408	-0.25202	-0.00014296	-0.033884	-1.9221E-05	-0.2859	-0.00016219	567.2792828682626	95.01	1.4329	94.873	94.334	95.767	-0.13689					75	32	3	0	0	0	0.067814	5	11713	11691;11701;11713;11725;11737		122.18	42.725	1	5040700			81284	6280	56671	56765	90246;90247;90248;90249;90250	90248					-0.016893829964601537
TTDFIFNLY	9	Unmodified	_TTDFIFNLY_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.2791748046875	2	567.279315	1132.54408	0.60791	0.00034486	-0.80163	-0.00045475	-0.19372	-0.00010989	567.2788013338723	95.043	1.5588	94.92	94.466	96.025	-0.12251					94	35	4	0	0	0	0.047345	4	11712	11712;11722;11734;11746		129.68	49.743	1	4715600			81285	6280	56671	56765	90251;90252;90253;90254	90251					-0.016893829964601537
TTDFIFNLY	9	Unmodified	_TTDFIFNLY_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.2789916992188	2	567.279315	1132.54408	-0.25884	-0.00014684	0.079858	4.5302E-05	-0.17899	-0.00010153	567.2792913185621	95.099	1.56	94.947	94.494	96.054	-0.15186					109	35	5	0	0	0	0.021872	5	11724	11691;11700;11712;11724;11736		148.04	74.068	1	4610600			81286	6280	56671	56765	90255;90256;90257;90258;90259	90258					-0.016893829964601537
TTDFIYQLY	9	Unmodified	_TTDFIYQLY_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.285400390625	2	582.284597	1162.55464	0.29914	0.00017419	-0.53621	-0.00031223	-0.23707	-0.00013804	582.2841362912748	84.879	1.1657	84.676	84.253	85.419	-0.20329					80	27	4	0	0	0	0.047345	3	10282	10259;10270;10282		129.68	60.896	1	2056900			81287	1350	56672	56766	90260;90261;90262	90262					-0.02013400342048044
TTDFIYQLY	9	Unmodified	_TTDFIYQLY_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.2852783203125	2	582.284597	1162.55464	0.024774	1.4426E-05	-0.027945	-1.6272E-05	-0.0031709	-1.8463E-06	582.2844063108213	84.832	1.2084	84.673	84.192	85.401	-0.15869					85	28	4	0	0	0	0.096521	2	10265	10265;10277		111.65	42.639	1	2085100			81288	1350	56672	56766	90263;90264	90263					-0.02013400342048044
TTDFIYQLY	9	Unmodified	_TTDFIYQLY_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.2846069335938	2	582.284597	1162.55464	0.036495	2.1251E-05	-0.33658	-0.00019598	-0.30008	-0.00017473	582.2842409852572	84.809	1.3366	84.671	84.323	85.659	-0.13789					94	31	4	0	0	0	0.072054	3	10246	10246;10255;10282		120.62	44.88	1	2162500			81289	1350	56672	56766	90265;90266;90267	90265					-0.02013400342048044
TTDFIYQLY	9	Unmodified	_TTDFIYQLY_					0	0	0		ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP	ENSG00000067057|ENST00000381125|PFKP	ENSG00000067057|ENST00000381125|PFKP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	582.284597	1162.55464	-1.3506	-0.00078644	-2.3438	-0.0013648	-3.6945	-0.0021512	582.7850352433796	84.828	0.16759	84.755	84.674	84.842	-0.072769	0.061505	-0.0023027	NaN	129.68	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33404			81290	1350	56672	56766							-0.02013400342048044
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.2315673828125	2	611.256568	1220.49858	-0.34738	-0.00021234	-0.10021	-6.1255E-05	-0.4476	-0.0002736	611.2564082457483	62.889	0.65933	62.63	62.579	63.239	-0.25824					29	16	2	0	0	0	0.14913	1	7072	7072		104.42	54.399	1	1318400			81291	8151	56673	56767	90268	90268					-0.10284653249505027
TTDFPGNYSGY	11	Unmodified	_TTDFPGNYSGY_					0	0	0		ENST00000512472.5_1_6:43484832-43487226:+|nuORF;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	ENST00000512472.5_1_6:43484832-43487226:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	611.256568	1220.49858	-1.0225	-0.00062502	0.50794	0.00031048	-0.51458	-0.00031454	611.2566482797591	62.565	0.57827	62.381	61.917	62.495	-0.18386	-0.1247	0.00039831	NaN	104.42	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825730			81292	8151	56673	56767							-0.10284653249505027
TTDGYLLRLF	10	Unmodified	_TTDGYLLRLF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENST00000472161.1_1_18:57817108-57817555:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.827392578125	2	599.826963	1197.63937	0.13291	7.9725E-05	-0.27064	-0.00016234	-0.13773	-8.2615E-05	599.8266712648552	82.348	1.0395	82.128	81.828	82.867	-0.22015					68	23	5	0	0	0	0.097953	2	9899	9899;9909		136.27	83.331	1	2312500			81293	5814	56674	56768	90269;90270	90269					0.04845970194560323
TTDGYLLRLF	10	Unmodified	_TTDGYLLRLF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENST00000472161.1_1_18:57817108-57817555:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.8272094726562	2	599.826963	1197.63937	-0.36542	-0.00021919	0.052393	3.1427E-05	-0.31303	-0.00018776	599.8268552318351	82.316	0.9514	82.135	81.856	82.807	-0.18079					64	21	4	0	0	0	0.37509	2	9910	9910;9923		101.25	50.747	1	2258500			81294	5814	56674	56768	90271;90272	90271					0.04845970194560323
TTDGYLLRLF	10	Unmodified	_TTDGYLLRLF_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF;ENST00000472161.1_1_18:57817108-57817555:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.8276977539062	2	599.826963	1197.63937	-0.91743	-0.0005503	0.81247	0.00048734	-0.10497	-6.2961E-05	599.8273042841138	82.305	1.0813	82.165	81.827	82.908	-0.14014					68	24	4	0	0	0	0.26927	2	9902	9890;9902		112.41	59.059	1	2228600			81295	5814	56674	56768	90273;90274	90274					0.04845970194560323
TTDILGLIIV	10	Unmodified	_TTDILGLIIV_					0	0	0		nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7715454101562	2	529.328808	1056.64306	-1.1007	-0.00058264	2.3119	0.0012238	1.2112	0.00064112	529.3296760356659	55.768	0.51483	55.553	55.336	55.851	-0.21551					30	13	3	0	0	0	0.03519	1	6000	6000		24.203	0	1	214090			81296	18610	56675	56769	90275	90275					0.11700639968421456
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.776611328125	2	513.776939	1025.53933	-0.59542	-0.00030591	0.15413	7.9191E-05	-0.44129	-0.00022672	513.7769878321795	25.224	1.2778	24.997	24.451	25.729	-0.22683					93	29	5	0	0	0	0.015752	5	1181	1159;1169;1181;1192;1206		158.07	89.288	1	4382900			81297	1296	56676	56770	90276;90277;90278;90279;90280	90278					0.027577328607549134
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.7767333984375	2	513.776939	1025.53933	-0.20337	-0.00010449	-0.2607	-0.00013394	-0.46407	-0.00023843	513.7767997682822	24.991	1.1975	24.816	24.34	25.537	-0.17484					80	27	5	0	0	0	0.025498	4	1133	1120;1133;1145;1157		145.16	76.369	1	3898500			81298	1296	56676	56770	90281;90282;90283;90284	90282					0.027577328607549134
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.7767333984375	2	513.776939	1025.53933	1.1815	0.00060701	-1.7765	-0.0009127	-0.59499	-0.00030569	513.77602154948	25.015	1.1523	24.843	24.427	25.579	-0.17151					75	26	4	0	0	0	0.071379	4	1114	1102;1114;1127;1140		120.87	52.94	1	4395800			81299	1296	56676	56770	90285;90286;90287;90288	90286					0.027577328607549134
TTDKKSLAY	9	Unmodified	_TTDKKSLAY_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	513.776939	1025.53933	-0.85972	-0.00044171	2.7942	0.0014356	1.9345	0.00099389	513.7781968142659	24.851	0.68539	24.851	24.563	25.248	0	-0.025591	0.0034705	NaN	158.07	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157620			81300	1296	56676	56770							0.027577328607549134
TTDKRTSFY	9	Unmodified	_TTDKRTSFY_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;ENSG00000266094|ENST00000579436|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.77734375	2	559.77747	1117.54039	-0.59628	-0.00033379	0.11993	6.7134E-05	-0.47635	-0.00026665	559.7774088268989	29.84	0.93117	29.596	29.274	30.205	-0.24415					53	21	4	0	0	0	0.041068	3	1853	1853;1866;1880		132.76	55.911	1	1556000			81301	10974	56677	56771	90289;90290;90291	90289					-0.013680527703400003
TTDKRTSFY	9	Unmodified	_TTDKRTSFY_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;ENSG00000266094|ENST00000579436|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.7772827148438	2	559.77747	1117.54039	-0.73529	-0.0004116	0.26305	0.00014725	-0.47224	-0.00026435	559.7775210027794	29.708	0.80285	29.535	29.199	30.002	-0.17258					46	18	3	0	0	0	0.247	2	1835	1835;1848		82.75	36.778	1	1593700			81302	10974	56677	56771	90292;90293	90292					-0.013680527703400003
TTDKRTSFY	9	Unmodified	_TTDKRTSFY_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;ENSG00000266094|ENST00000579436|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.7774047851562	2	559.77747	1117.54039	-0.34891	-0.00019531	-0.078713	-4.4062E-05	-0.42762	-0.00023937	559.7772592197542	29.708	0.92689	29.559	29.213	30.14	-0.14952					58	21	4	0	0	0	0.03201	2	1823	1813;1823		139.97	57.73	1	1610000			81303	10974	56677	56771	90294;90295	90295					-0.013680527703400003
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	644.3139038085938	2	644.314417	1286.61428	-1.5678	-0.0010101	1.6132	0.0010394	0.045395	2.9249E-05	644.3153848785306	67.292	0.95421	67.043	66.792	67.747	-0.2484					42	22	2	0	0	0	3.172E-05	1	7746	7746		171.33	88.58	1	2647100			81304	7978	56678	56772	90296	90296					-0.017561293986545934
TTDLFGRDLSY	11	Unmodified	_TTDLFGRDLSY_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	644.3145141601562	2	644.314417	1286.61428	-0.156	-0.00010051	0.20355	0.00013115	0.047553	3.0639E-05	644.3145439719834	67.347	0.9889	67.124	66.778	67.766	-0.22374					44	23	2	0	0	0	5.8927E-08	2	7758	7747;7758		191.45	114.68	1	2704300			81305	7978	56678	56772	90297;90298	90298					-0.017561293986545934
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.2303466796875	2	568.23055	1134.44655	-0.82579	-0.00046924	0.29675	0.00016862	-0.52904	-0.00030062	568.2307094946844	38.398	1.2302	38.219	37.908	39.138	-0.17929					92	34	5	0	0	0	3.7628E-06	4	3167	3156;3167;3179;3191		288.7	192.89	1	11254000			81306	11001	56679	56773	90299;90300;90301;90302	90300					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.22998046875	2	568.23055	1134.44655	-0.67048	-0.00038099	0.13135	7.4635E-05	-0.53914	-0.00030635	568.2305854362309	38.322	1.3561	38.1	37.832	39.188	-0.22149					99	37	5	0	0	0	4.3571E-06	5	3154	3144;3154;3165;3179;3193		275.71	190.55	1	10685000			81307	11001	56679	56773	90303;90304;90305;90306;90307	90304					-0.11529816663278325
TTDSSYGQNY	10	Unmodified	_TTDSSYGQNY_					0	0	0		nc|ENSG00000270647|Q92804-2|TAF15;ENSG00000270647|ENST00000605844|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	nc|ENSG00000270647|Q92804-2|TAF15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.2299194335938	2	568.23055	1134.44655	-0.60055	-0.00034125	-0.088357	-5.0207E-05	-0.68891	-0.00039146	568.2304427038991	38.226	1.0999	38.007	37.644	38.744	-0.21849					97	30	5	0	0	0	4.3571E-06	4	3132	3109;3120;3132;3143		271.48	178.34	1	10460000			81308	11001	56679	56773	90308;90309;90310;90311	90310					-0.11529816663278325
TTEATCNLWS	10	Unmodified	_TTEATCNLWS_					0	0	0		ENSG00000283528|ENST00000636941|TCAF2C;nc|ENSG00000170379|A6NFQ2-3|TCAF2;nc|ENSG00000170379|A6NFQ2-2|TCAF2;ENSG00000170379|ENST00000684770|TCAF2	ENSG00000283528|ENST00000636941|TCAF2C	ENSG00000283528|ENST00000636941|TCAF2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.2766723632812	2	563.247689	1124.48082	-0.1674	-9.4289E-05	0.96136	0.00054148	0.79396	0.00044719	563.2486337191641	81.895	0.11658	81.764	81.705	81.821	-0.13075					4	2	2	0	0	0	0.03519	1	10180	10180		54.776	0	1	74694			81309	8030	56680	56774	90312	90312					-0.07643691776024752
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.7796630859375	2	570.78021	1139.54587	1.3499	0.00077047	1.8951	0.0010817	3.2449	0.0018521	570.7792411278125	36.309	0.88675	36.11	35.809	36.696	-0.19829					78	22	5	0	0	0	0.094442	1	2827	2827		112.41	35.637	1	2796200			81310	5677	56681	56775	90313	90313					-0.0183237397850462
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	570.78021	1139.54587	-0.17515	-9.9974E-05	-0.038475	-2.1961E-05	-0.21363	-0.00012193	570.7802452399576	36.402	0.80341	36.197	35.919	36.723	-0.20518	0.037543	-0.00025747	NaN	112.41	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2476500			81311	5677	56681	56775							-0.0183237397850462
TTEERTQLY	9	Unmodified	_TTEERTQLY_					0	0	0		ENSG00000143643|ENST00000366661|TTC13;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENST00000471302.2_1_1:231047214-231057243:-|nuORF	ENSG00000143643|ENST00000366661|TTC13	ENSG00000143643|ENST00000366661|TTC13	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	570.78021	1139.54587	0.31008	0.00017698	2.8881	0.0016484	3.1981	0.0018254	570.7798657983366	36.387	0.77668	36.171	35.913	36.689	-0.21661	0.011408	0.0030833	NaN	112.41	75	19	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3065700			81312	5677	56681	56775							-0.0183237397850462
TTEETEVEL	9	Unmodified	_TTEETEVEL_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2792358398438	2	525.745502	1049.47645	1.0203	0.00053639	-3.593	-0.001889	-2.5727	-0.0013526	525.7434633868253	87.414	0.50246	87.436	87.178	87.681	0.021263					14	11	2	0	0	0	0.024506	1	10894	10894		23.042	0	1	81996			81313	9496	56682	56776	90314	90314					-0.04630877717954718
TTEFLYNLY	9	Unmodified	_TTEFLYNLY_					0	0	0		ENST00000474114.5_1_21:45744937-45745285:+|nuORF;ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000474114.5_1_21:45744937-45745285:+|nuORF	ENST00000474114.5_1_21:45744937-45745285:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.285400390625	2	582.284597	1162.55464	-0.1719	-0.00010009	0.40251	0.00023438	0.23061	0.00013428	582.2846043641882	83.871	0.81345	83.702	83.369	84.182	-0.16915					56	18	4	0	0	0	0.35646	1	10139	10139		68.787	2.9837	1	545640			81314	5529	56683	56777	90315	90315					-0.020134003420253066
TTEFLYNLY	9	Unmodified	_TTEFLYNLY_					0	0	0		ENST00000474114.5_1_21:45744937-45745285:+|nuORF;ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000474114.5_1_21:45744937-45745285:+|nuORF	ENST00000474114.5_1_21:45744937-45745285:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	582.284597	1162.55464	-0.19385	-0.00011288	0.37851	0.0002204	0.18466	0.00010753	582.2846056904116	83.865	0.81497	83.726	83.465	84.28	-0.1386	0.0014061	0.00027119	NaN	68.787	56	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667230			81315	5529	56683	56777							-0.020134003420253066
TTEGQENV	8	Unmodified	_TTEGQENV_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.1992492675781	2	439.198522	876.38249	-0.91091	-0.00040007	2.026	0.00088982	1.1151	0.00048975	439.19938876218384	61.7	0.7998	61.523	61.203	62.003	-0.17781					48	19	5	0	0	0	0.6536	1	6908	6908		71.296	4.8664	1	1147000			81316	8590	56684	56778	90316	90316					-0.06064552029567949
TTEKKKLN	8	Unmodified	_TTEKKKLN_					0	0	0			REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	REV__nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.8010559082031	2	481.287474	960.560395	-0.2874	-0.00013832	2.4263	0.0011678	2.1389	0.0010294	481.2885140007641	93.784	0.65074	93.781	93.496	94.147	-0.0028763					27	15	2	0	0	0	0.027866	1	11916	11916		18.324	0	1	310810	+		81317	23332	56685	56779	90317	90317					0.07853742960287491
TTETLEWR	8	Unmodified	_TTETLEWR_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9;nc|ENSG00000115514|O14530-2|TXNDC9;ENST00000463385.5_1_2:99938416-99949470:-|nuORF	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2730712890625	2	518.258914	1034.50327	0.64558	0.00033458	0.20765	0.00010762	0.85323	0.00044219	518.2586443881537	70.915	0.39249	70.7	70.52	70.913	-0.21425					13	8	2	0	0	0	0.027866	1	8277	8277		20.947	3.582	1	320000			81318	3456	56686	56780	90318	90318					-0.012597243161053484
TTETSDGMNFT	11	Unmodified	_TTETSDGMNFT_					0	0	0		PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant;PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	PRUNE2|p.E2085*|1|0.27|ENSG00000106772|chr9:76706022-76706023|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	601.2470092773438	2	602.245343	1202.47613	-0.38572	-0.0002323	-3.4624	-0.0020852	-3.8481	-0.0023175	602.7456786303762	50.292	0.19331	50.012	49.914	50.108	-0.27977					6	4	2	0	0	0	0.02475	1	5095	5095		28.081	0	1	110170			81319	2813	56687	56781	90319	90319					-0.11700620709461873
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.7652587890625	2	544.766571	1087.51859	-0.22526	-0.00012271	-0.046948	-2.5575E-05	-0.2722	-0.00014829	544.7664012614065	46.486	1.0857	46.39	46.115	47.2	-0.096649					87	29	4	0	0	0	0.013805	4	4472	4472;4477;4490;4501		167.82	104.08	1	7952900			81320	4171	56688	56782	90320;90321;90322;90323	90320					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.7667846679688	2	544.766571	1087.51859	-0.22513	-0.00012264	-0.40898	-0.0002228	-0.63411	-0.00034544	544.7662638109508	46.778	1.2358	46.508	46.192	47.427	-0.26939					91	33	5	0	0	0	0.013805	4	4522	4499;4510;4522;4536		183.89	112.02	1	10478000			81321	4171	56688	56782	90324;90325;90326;90327	90326					-0.021668575189096373
TTEVHPELY	9	Unmodified	_TTEVHPELY_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;nc|ENSG00000125991|Q9Y282-2|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.7666015625	2	544.766571	1087.51859	-1.0854	-0.00059128	0.3194	0.000174	-0.76597	-0.00041728	544.7666814784546	46.591	1.027	46.397	46.165	47.192	-0.19387					85	28	4	0	0	0	0.013805	4	4479	4479;4492;4505;4519		167.82	102.02	1	11460000			81322	4171	56688	56782	90328;90329;90330;90331	90328					-0.021668575189096373
TTFVALYDY	9	Unmodified	_TTFVALYDY_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC;ENST00000472968.1_1_20:36012742-36022397:+|nuORF	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7803344726562	2	546.76604	1091.51753	-0.78021	-0.00042659	-2.4824	-0.0013573	-3.2626	-0.0017839	546.7642203272844	73.033	0.69301	72.835	72.497	73.19	-0.1981					36	16	4	0	0	0	0.024205	1	8616	8616		44.117	0	1	257940			81323	9958	56689	56783	90332	90332					-0.02457071887829443
TTFVELLASI	10	Unmodified	_TTFVELLASI_					0	0	0			REV__ENST00000569334.1_1_X:26577244-26577541:+|nuORF	REV__ENST00000569334.1_1_X:26577244-26577541:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3109741210938	2	547.310615	1092.60668	-0.092686	-5.0728E-05	-0.51296	-0.00028075	-0.60564	-0.00033147	547.3102698258109	63.806	1.028	63.548	63.239	64.267	-0.25824					98	26	6	0	0	0	0.96965	1	7254	7254		49.442	0	1	15460000	+		81324	35369	56690	56784	90333	90333					0.0640776307170654
TTFVNGDALFI	11	Unmodified	_TTFVNGDALFI_					0	0	0			REV__ENST00000552030.5_1_12:109042755-109052582:-|nuORF	REV__ENST00000552030.5_1_12:109042755-109052582:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	599.783447265625	2	599.311146	1196.60774	-0.26626	-0.00015957	0.036545	2.1902E-05	-0.22971	-0.00013767	599.3111390853919	82.781	0.47688	82.6	82.331	82.807	-0.18079					26	10	3	0	0	0	0.024496	1	9991	9991		53.089	0	1	224220	+		81325	34944	56691	56785	90334	90334					0.01729977440595576
TTGALTLLVK	10	Unmodified	_TTGALTLLVK_					0	0	0		ENST00000567134.5_1_15:75914696-75914756:-|nuORF	ENST00000567134.5_1_15:75914696-75914756:-|nuORF	ENST00000567134.5_1_15:75914696-75914756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.76849365234375	2	508.82115	1015.62775	-0.24502	-0.00012467	-1.4297	-0.00072744	-1.6747	-0.00085211	508.81967899721565	41.593	0.70918	41.464	41.183	41.892	-0.12931					39	19	3	0	0	0	0.03519	1	3803	3803		14.865	0	1	532540			81326	16955	56692	56786	90335	90335					0.120557731712438
TTGAVSGSFVR	11	Unmodified	_TTGAVSGSFVR_					0	0	0			REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	REV__ENST00000478000.5_1_7:944755-944842:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.28564453125	2	541.285463	1080.55637	-0.32818	-0.00017764	-0.21731	-0.00011763	-0.54549	-0.00029527	541.2852850005885	22.605	0.9293	22.403	22.048	22.977	-0.20199					50	19	4	0	0	0	0.73399	1	780	780		61.691	3.4614	1	930260	+		81327	33350	56693	56787	90336	90336					0.019316534665676954
TTGAWWYLL	9	Unmodified	_TTGAWWYLL_					0	0	0			REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.7804565429688	2	555.784567	1109.55458	0.91219	0.00050698	0.7956	0.00044218	1.7078	0.00094916	555.7847614630133	58.924	0.61124	58.737	58.538	59.149	-0.18705					31	16	3	0	0	0	0.023775	1	6656	6656		79.939	37.075	1	1188200	+		81328	21073	56694	56788	90337	90337					0.004186444486094842
TTGAWWYLL	9	Unmodified	_TTGAWWYLL_					0	0	0			REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.784567	1109.55458	0.68248	0.00037931	1.0336	0.00057447	1.7161	0.00095378	555.7850127467112	58.745	0.65028	58.745	58.495	59.145	0	0.030073	0.0014441	NaN	79.939	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	984260	+		81329	21073	56694	56788							0.004186444486094842
TTGAWWYLL	9	Unmodified	_TTGAWWYLL_					0	0	0			REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	555.784567	1109.55458	-0.43594	-0.00024229	0.042003	2.3345E-05	-0.39394	-0.00021895	555.7844250486091	58.909	0.71069	58.721	58.431	59.141	-0.18795	0.0064367	0.00034189	NaN	79.939	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2502400	+		81330	21073	56694	56788							0.004186444486094842
TTGAWWYLL	9	Unmodified	_TTGAWWYLL_					0	0	0			REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	555.784567	1109.55458	0.21484	0.0001194	-0.73639	-0.00040927	-0.52155	-0.00028987	555.7839572059252	58.871	0.60553	58.689	58.386	58.991	-0.18134	-0.025523	-0.00052334	NaN	79.939	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2556800	+		81331	21073	56694	56788							0.004186444486094842
TTGAWWYLL	9	Unmodified	_TTGAWWYLL_					0	0	0			REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	REV__SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	555.784567	1109.55458	0.44154	0.0002454	-0.89745	-0.00049879	-0.45591	-0.00025339	555.783756119791	58.999	1.0015	58.758	58.216	59.218	-0.24165	0.042872	-0.00070238	NaN	79.939	53	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2572700	+		81332	21073	56694	56788							0.004186444486094842
TTGGALGVLTP	11	Unmodified	_TTGGALGVLTP_					0	0	0			REV__nc|ENSG00000183876|Q5FYB1-2|ARSI	REV__nc|ENSG00000183876|Q5FYB1-2|ARSI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.30877685546875	2	493.779482	985.544411	0.28304	0.00013976	0.13518	6.6749E-05	0.41822	0.00020651	493.7791918150958	69.053	0.79978	68.76	68.366	69.166	-0.29267					27	20	2	0	0	0	0.024756	1	8203	8203		44.377	3.599	1	265380	+		81333	27621	56695	56789	90338	90338					0.05106036723384477
TTGLSPQRK	9	Unmodified	_TTGLSPQRK_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	REV__nc|ENSG00000183530|Q5THK1-4|PRR14L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2773742675781	2	494.282723	986.550893	-0.43692	-0.00021596	-0.31708	-0.00015673	-0.754	-0.00037269	494.28243569039057	20.651	0.42587	20.547	20.326	20.752	-0.10477					14	8	2	0	0	0	0.024527	1	560	560		31.53	6.0796	1	218890	+		81334	37004	56696	56790	90339	90339					0.057079746747604077
TTGNGISVGAP	11	Unmodified	_TTGNGISVGAP_					0	0	0			REV__ENST00000290200.6_1_21:34638802-34640744:+|nuORF	REV__ENST00000290200.6_1_21:34638802-34640744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.23028564453125	2	487.251089	972.487624	-0.71081	-0.00034634	0.68098	0.00033181	-0.02983	-1.4535E-05	487.2513530169321	30.949	0.86529	31.024	30.626	31.492	0.074314					28	20	2	0	0	0	0.02475	1	1973	1973		42.864	13.715	1	806640	+		81335	29931	56697	56791	90340	90340					0.0002798916685833319
TTGNGISVGAP	11	Unmodified	_TTGNGISVGAP_					0	0	0			REV__ENST00000290200.6_1_21:34638802-34640744:+|nuORF	REV__ENST00000290200.6_1_21:34638802-34640744:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.251089	972.487624	-0.058804	-2.8652E-05	-1.3251	-0.00064566	-1.3839	-0.00067431	487.25014520110756	31.684	0.20128	31.499	31.36	31.562	-0.18503	0.21728	-0.001936	NaN	28.081	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17333	+		81336	29931	56697	56791							0.0002798916685833319
TTGPSLRSQP	10	Unmodified	_TTGPSLRSQP_					0	0	0			REV__ENST00000303460.4_1_12:54379276-54379354:+|nuORF	REV__ENST00000303460.4_1_12:54379276-54379354:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.263916015625	2	522.277638	1042.54072	0.14855	7.7584E-05	-3.3999	-0.0017757	-3.2514	-0.0016981	522.776763641545	54.529	0.43817	54.283	54.041	54.479	-0.2453					14	12	2	0	0	0	0.03519	1	5779	5779		61.691	27.519	1	170210	+		81337	30096	56698	56792	90341	90341					0.021153669495106442
TTGSDIGFSVI	11	Unmodified	_TTGSDIGFSVI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.8026123046875	2	548.779679	1095.5448	-0.73515	-0.00040343	-0.32249	-0.00017698	-1.0576	-0.00058041	548.7793968052744	45.664	0.71619	45.708	45.444	46.16	0.043877					38	18	3	0	0	0	0.024752	1	4363	4363		32.812	0	1	796730			81338	4580	56699	56793	90342	90342					0.0008541165257156536
TTGTITVN	8	Unmodified	_TTGTITVN_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	402.72210693359375	2	403.71635	805.418148	1.1459	0.00046261	1.9533	0.00078857	3.0992	0.0012512	403.71718591661926	27.149	0.68843	27.23	26.883	27.571	0.081291					32	18	3	0	0	0	0.027866	1	1356	1356		6.7355	3.5763	1	163320			81339	18480	56700	56794	90343	90343					0.007655302181092338
TTGVVSTPLI	10	Unmodified	_TTGVVSTPLI_					0	0	0		nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.289794921875	2	494.289682	986.564812	0.17358	8.5799E-05	-0.89967	-0.0004447	-0.72609	-0.0003589	494.28932143356565	61.382	1.259	61.453	61.022	62.281	0.071125					109	33	4	0	0	0	0.45367	1	7052	7052		93.195	13.483	1	96299000			81340	18553	56701	56795	90344	90344					0.07099207383214434
TTHETEGFGY	10	Unmodified	_TTHETEGFGY_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.7306518554688	2	571.24346	1140.47237	-0.30671	-0.00017521	3.4319	0.0019604	3.1252	0.0017852	571.7458110096971	69.907	0.50596	69.64	69.41	69.916	-0.26725					25	11	3	0	0	0	0.03519	1	8093	8093		19.104	0	1	249710	+		81341	29092	56702	56796	90345	90345					-0.09224922420980874
TTHGGQMCSI	10	Carbamidomethyl (C)	_TTHGGQMC(Carbamidomethyl (C))SI_	TTHGGQMC(1)SI		TTHGGQMC(96)SI		0	1	0			REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2332153320312	2	546.234058	1090.45356	-1.8804	-0.0010271	2.14	0.001169	0.2597	0.00014186	546.2352850578893	29.709	0.72888	29.709	29.447	30.176	0					35	17	3	0	0	0	0.42812	1	1845	1845		95.815	28.321	1	748380	+		81342	23343	56703	56797	90346	90346	304				-0.08804498588074239
TTHGGQMCSI	10	Carbamidomethyl (C)	_TTHGGQMC(Carbamidomethyl (C))SI_					0	1	0			REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	546.234058	1090.45356	-1.8804	-0.0010271	2.14	0.001169	0.2597	0.00014186	546.2352850578893	29.709	0.72888	29.709	29.447	30.176	0	0.12475	0.0008421	NaN	95.815	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748380	+		81343	23343	56703	56797			304				-0.08804498588074239
TTHGGQMCSI	10	Carbamidomethyl (C)	_TTHGGQMC(Carbamidomethyl (C))SI_					0	1	0			REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.234058	1090.45356	-1.1861	-0.00064786	1.2316	0.00067274	0.045543	2.4877E-05	546.2346094688987	29.639	0.7699	29.642	29.388	30.158	0.0031357	0.058184	-0.00015036	NaN	95.815	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780450	+		81344	23343	56703	56797			304				-0.08804498588074239
TTHGGQMCSI	10	Carbamidomethyl (C)	_TTHGGQMC(Carbamidomethyl (C))SI_					0	1	0			REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	REV__ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.234058	1090.45356	-1.3287	-0.00072576	1.2763	0.00069718	-0.05233	-2.8585E-05	546.2346712457836	29.323	0.71812	29.401	29.165	29.883	0.078344	-0.18294	-0.00010148	NaN	95.815	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745440	+		81345	23343	56703	56797			304				-0.08804498588074239
TTHHGSALV	9	Unmodified	_TTHHGSALV_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-2|KMT2E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.7590637207031	2	461.740691	921.466829	-0.67766	-0.0003129	0.57038	0.00026337	-0.10727	-4.9533E-05	461.7408970097269	31.279	0.46568	31.279	31.003	31.469	0					14	10	2	0	0	0	0.024487	1	2039	2039		24.203	0	1	64458	+		81346	19808	56704	56798	90347	90347					0.002954435778633524
TTHILDEADA	10	Unmodified	_TTHILDEADA_					0	0	0		PCDHA12|p.R635H|1|0.11|ENSG00000251664|chr5:140877376-140877376|G/A|missense_variant	PCDHA12|p.R635H|1|0.11|ENSG00000251664|chr5:140877376-140877376|G/A|missense_variant	PCDHA12|p.R635H|1|0.11|ENSG00000251664|chr5:140877376-140877376|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2799072265625	2	543.259111	1084.50367	-1.0641	-0.0005781	-2.9715	-0.0016143	-4.0356	-0.0021924	543.257025003739	61.879	0.4664	61.701	61.536	62.003	-0.17781					18	11	3	0	0	0	0.03519	1	6922	6922		40.778	0.20554	1	153700			81347	18947	56705	56799	90348	90348					-0.03520349386917587
TTHKEELY	8	Unmodified	_TTHKEELY_					0	0	0		ENST00000478756.1_1_1:155580834-155581160:+|nuORF;ENST00000465137.5_1_1:155580224-155581295:+|nuORF;ENST00000473327.5_1_1:155580203-155581350:+|nuORF;ENST00000490642.5_1_1:155580039-155581213:+|nuORF;ENST00000483832.5_1_1:155580060-155581593:+|nuORF;ENST00000494995.5_1_1:155580107-155581593:+|nuORF;ENST00000488901.5_1_1:155580006-155581350:+|nuORF;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1	ENST00000478756.1_1_1:155580834-155581160:+|nuORF	ENST00000478756.1_1_1:155580834-155581160:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7528991699219	2	510.753464	1019.49238	-0.87701	-0.00044793	0.8265	0.00042214	-0.050506	-2.5796E-05	510.7536276421122	45.842	1.0592	45.639	45.098	46.157	-0.20226					77	29	4	0	0	0	0.71833	1	4373	4373		65.803	4.8312	1	4086900			81348	4108	56706	56800	90349	90349					-0.01659126690390167
TTHNRIHT	8	Unmodified	_TTHNRIHT_					0	0	0		ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	ZNF493|p.K424N|1|0.19|ENSG00000196268|chr19:21424315-21424315|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2579650878906	2	490.25704	978.499526	0.30171	0.00014791	1.7148	0.0008407	2.0165	0.00098862	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	0.97924	1	13491	13491		40.573	3.4135	1	6618800			81349	38195	56707	56801	90350	90350					0.009416507007017572
TTHWVYTY	8	Unmodified	_TTHWVYTY_					0	0	0			REV__F5|p.A1712T|1|0.55|ENSG00000198734|chr1:169530860-169530860|C/T|missense_variant	REV__F5|p.A1712T|1|0.55|ENSG00000198734|chr1:169530860-169530860|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.23828125	2	535.750724	1069.4869	-0.47915	-0.00025671	-1.8728	-0.0010033	-2.3519	-0.00126	535.7490183378418	60.481	0.97783	60.275	59.642	60.62	-0.20599					54	24	4	0	0	0	0.027866	1	6775	6775		33.516	0	1	1860500	+		81350	36017	56708	56802	90351	90351					-0.04506805482196796
TTIATILSDL	10	Unmodified	_TTIATILSDL_					0	0	0			REV__ENSG00000141646|ENST00000342988|SMAD4	REV__ENSG00000141646|ENST00000342988|SMAD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2971801757812	2	524.300247	1046.58594	-1.0531	-0.00055216	-4.2184	-0.0022117	-5.2715	-0.0027639	524.297968411829	103.06	1.2007	103.06	102.65	103.85	0					86	29	4	0	0	0	0.45367	1	13214	13214		93.195	2.8256	1	4462700	+		81351	24115	56709	56803	90352	90352					0.06451172692050022
TTIDDDTTTW	10	Unmodified	_TTIDDDTTTW_					0	0	0			REV__nc|ENSG00000124812|P54107-2|CRISP1	REV__nc|ENSG00000124812|P54107-2|CRISP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.7539672851562	2	584.753858	1167.49316	-0.37842	-0.00022128	0.57995	0.00033913	0.20153	0.00011784	584.7541469407863	70.404	0.62254	70.132	69.741	70.364	-0.27185					21	14	2	0	0	0	0.3934	1	8196	8196		99.375	17.134	1	2562000	+		81352	22791	56710	56804	90353	90353					-0.08388376832022004
TTIDDDTTTW	10	Unmodified	_TTIDDDTTTW_					0	0	0			REV__nc|ENSG00000124812|P54107-2|CRISP1	REV__nc|ENSG00000124812|P54107-2|CRISP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.7540893554688	2	584.753858	1167.49316	-0.78003	-0.00045612	0.91805	0.00053684	0.13803	8.0713E-05	584.7543317875783	70.359	0.47856	70.102	69.768	70.247	-0.25712					22	11	2	0	0	0	0.57825	1	8189	8189		79.451	10.966	1	2080500	+		81353	22791	56710	56804	90354	90354					-0.08388376832022004
TTIDDDTTTW	10	Unmodified	_TTIDDDTTTW_					0	0	0			REV__nc|ENSG00000124812|P54107-2|CRISP1	REV__nc|ENSG00000124812|P54107-2|CRISP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	584.753858	1167.49316	-0.37842	-0.00022128	0.57995	0.00033913	0.20153	0.00011784	584.7541469407863	70.404	0.62254	70.132	69.741	70.364	-0.27185	0.031142	-0.00014391	NaN	99.375	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2562000	+		81354	22791	56710	56804							-0.08388376832022004
TTIDDDTTTW	10	Unmodified	_TTIDDDTTTW_					0	0	0			REV__nc|ENSG00000124812|P54107-2|CRISP1	REV__nc|ENSG00000124812|P54107-2|CRISP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	584.753858	1167.49316	-0.78003	-0.00045612	0.91805	0.00053684	0.13803	8.0713E-05	584.7543317875783	70.359	0.47856	70.102	69.768	70.247	-0.25712	0.00094715	0.00025151	NaN	99.375	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2080500	+		81355	22791	56710	56804							-0.08388376832022004
TTIGLTVF	8	Unmodified	_TTIGLTVF_					0	0	0		ENSG00000175164|ENST00000538324|ABO;nc|ENSG00000175164|P16442|ABO	ENSG00000175164|ENST00000538324|ABO	ENSG00000175164|ENST00000538324|ABO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2467956542969	2	426.247286	850.48002	0.84051	0.00035826	-3.227	-0.0013755	-2.3865	-0.0010172	426.2457364112024	84.25	1.1492	84.047	83.567	84.716	-0.20329					69	26	5	0	0	0	1.0338	1	10179	10179		31.955	3.7006	1	832130			81356	8533	56711	56805	90355	90355					0.04879881637236849
TTIGSKLN	8	Unmodified	_TTIGSKLN_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.2391662597656	2	417.239993	832.465432	0.27597	0.00011514	-2.2001	-0.00091797	-1.9241	-0.00080283	417.238994678704	87.954	1.3047	87.817	87.388	88.693	-0.13613					49	31	2	0	0	0	1.0516	1	10699	10699		29.15	0	1	2230800	+		81357	19108	56712	56806	90356	90356					0.042498094890902394
TTIIFPKH	8	Unmodified	_TTIIFPKH_					0	0	0		nc|ENSG00000178882|Q6ZTI6-2|RFLNA;ENSG00000178882|ENST00000546355|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	nc|ENSG00000178882|Q6ZTI6-2|RFLNA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.30059814453125	2	478.781828	955.549102	-0.22205	-0.00010631	1.4775	0.00070738	1.2554	0.00060106	478.78247356586223	65.597	0.44236	65.324	65.126	65.568	-0.27282					19	12	2	0	0	0	0.027866	1	7779	7779		20.482	0	1	319830			81358	8841	56713	56807	90357	90357					0.0695496565680287
TTIIKLLK	8	Unmodified	_TTIIKLLK_					0	0	0			REV__EPPK1|p.E1829K|1|0.05|ENSG00000261150|chr8:143867769-143867769|C/T|missense_variant	REV__EPPK1|p.E1829K|1|0.05|ENSG00000261150|chr8:143867769-143867769|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2870178222656	2	465.323328	928.632104	0.10388	4.8337E-05	-0.43675	-0.00020323	-0.33287	-0.00015489	465.3232608554034	75.349	0.29082	75.173	74.943	75.234	-0.17548					9	6	2	0	0	0	0.027866	1	8906	8906		39.253	0	1	157130	+		81359	36004	56714	56808	90358	90358					0.16493282384806207
TTIIPKRI	8	Unmodified	_TTIIPKRI_					0	0	0		ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.3104553222656	2	471.310752	940.606951	0.30942	0.00014583	-0.3903	-0.00018395	-0.080879	-3.8119E-05	471.31048489776583	19.95	1.006	19.95	19.366	20.372	0					54	20	4	0	0	0	0.88442	1	469	469		52.299	0.96372	1	911270			81360	1658	56715	56809	90359	90359					0.13427227582246815
TTIIVPVML	9	Unmodified	_TTIIVPVML_					0	0	0		ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.8036193847656	2	493.801371	985.58819	1.6915	0.00083526	1.8395	0.00090834	3.531	0.0017436	493.8022022343365	23.294	0.76568	23.103	22.851	23.616	-0.19117					41	17	4	0	0	0	0.64155	1	895	895		50.025	18.07	1	2247500			81361	10926	56716	56810	90360	90360					0.09481929896162455
TTILDWPI	8	Unmodified	_TTILDWPI_					0	0	0		ENST00000592844.5_1_19:44732925-44738956:-|nuORF	ENST00000592844.5_1_19:44732925-44738956:-|nuORF	ENST00000592844.5_1_19:44732925-44738956:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2801818847656	2	479.765843	957.517133	1.4378	0.00068981	2.6579	0.0012752	4.0957	0.001965	479.7668577670826	85.467	0.79259	85.467	85.206	85.998	0					25	18	2	0	0	0	0.027866	1	10744	10744		35.201	1.6851	1	356330			81362	17383	56717	56811	90361	90361					0.03667553183004202
TTILIALLT	9	Unmodified	_TTILIALLT_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.27886962890625	2	479.812793	957.611034	-0.033473	-1.6061E-05	-0.053456	-2.5649E-05	-0.086929	-4.171E-05	479.8126722691028	96.363	0.81195	96.207	95.965	96.777	-0.15646					31	18	2	0	0	0	0.024457	1	11944	11944		10.265	0	1	152870	+		81363	20289	56718	56812	90362	90362					0.13053272285276307
TTINEHKLM	9	Unmodified	_TTINEHKLM_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.789794921875	2	543.784241	1085.55393	2.935	0.001596	-1.5216	-0.0008274	1.4134	0.00076859	543.7829883632025	16.575	0.46167	16.575	16.413	16.874	0					32	15	3	0	0	0	0.83071	1	68	68		37.159	1.5408	1	75978	+		81364	22560	56719	56813	90363	90363					0.0145748173724769
TTIPLSFFT	9	Unmodified	_TTIPLSFFT_					0	0	0			REV__ENSG00000127329|ENST00000334414|PTPRB	REV__ENSG00000127329|ENST00000334414|PTPRB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.2985229492188	2	513.778951	1025.54335	-0.82425	-0.00042348	-1.6431	-0.0008442	-2.4674	-0.0012677	514.2805036439231	35.024	0.47992	35.024	34.826	35.306	0					17	12	2	0	0	0	0.024323	1	2690	2690		53.351	0	1	87956	+		81365	22927	56720	56814	90364	90364					0.03159822354473363
TTISDKLFIN	10	Unmodified	_TTISDKLFIN_					0	0	0			REV__ENSG00000125730|ENST00000245907|C3	REV__ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.2409057617188	2	576.318971	1150.62339	0.040959	2.3605E-05	-4.1179	-0.0023732	-4.0769	-0.0023496	576.3175243144132	68.566	0.59442	68.323	68.072	68.666	-0.24277					31	14	3	0	0	0	0.03519	1	7947	7947		32.751	0	1	397390	+		81366	22835	56721	56815	90365	90365					0.05410263957674033
TTISDLTTI	9	Unmodified	_TTISDLTTI_					0	0	0			REV__ENSG00000186472|ENST00000333891|PCLO	REV__ENSG00000186472|ENST00000333891|PCLO	MSMS	OPSCC_40_ClassI_Rep-3	6	482.76226806640625	2	482.763497	963.512442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.309	1	87.171	86.671	87.671	-0.13734								0	0	0	0.40817	1	10605	10605		60.972	0.67798	1		+		81367	27860	56722	56816	90366	90366					0.029226242495724364
TTISSMKILI	10	Unmodified	_TTISSMKILI_					0	0	0		ENST00000506111.1_1_4:38775035-38775113:-|nuORF	ENST00000506111.1_1_4:38775035-38775113:-|nuORF	ENST00000506111.1_1_4:38775035-38775113:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.3035888671875	2	553.828117	1105.64168	-0.7273	-0.0004028	3.3636	0.0018628	2.6363	0.00146	553.829888800722	92.018	1.0242	92.018	91.641	92.665	0					44	24	2	0	0	0	0.03519	1	11754	11754		29.17	0	1	421510			81368	15737	56723	56817	90367	90367					0.09308682608048002
TTITSHFAKG	10	Unmodified	_TTITSHFAKG_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.3082275390625	2	531.782556	1061.55056	-0.22975	-0.00012218	3.737	0.0019873	3.5072	0.0018651	531.7842662277219	70.94	0.87889	70.951	70.593	71.472	0.010735					28	21	2	0	0	0	0.03519	1	8478	8478		19.104	0	1	350670			81369	4465	56724	56818	90368	90368					0.022245549549097632
TTKETQKH	8	Unmodified	_TTKETQKH_					0	0	0			REV__ENSG00000159556|ENST00000290759|ISL2	REV__ENSG00000159556|ENST00000290759|ISL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.76068115234375	2	486.759081	971.503609	0.33186	0.00016154	0.63513	0.00030915	0.96699	0.00047069	486.75932391115856	17.769	0.29736	17.627	17.453	17.75	-0.14278					8	5	2	0	0	0	1.0574	1	196	196		26.693	2.1737	1	36987	+		81370	25263	56725	56819	90369	90369					0.016716954037519827
TTKETQKH	8	Unmodified	_TTKETQKH_					0	0	0			REV__ENSG00000159556|ENST00000290759|ISL2	REV__ENSG00000159556|ENST00000290759|ISL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.759081	971.503609	3.3674	0.0016391	-2.0631	-0.0010042	1.3043	0.00063488	486.7579322126341	17.623	0.34613	17.623	17.449	17.795	0	-0.0017974	-0.0012546	NaN	26.693	15	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99836	+		81371	25263	56725	56819							0.016716954037519827
TTKETQKH	8	Unmodified	_TTKETQKH_					0	0	0			REV__ENSG00000159556|ENST00000290759|ISL2	REV__ENSG00000159556|ENST00000290759|ISL2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	486.759081	971.503609	0.33186	0.00016154	0.63513	0.00030915	0.96699	0.00047069	486.75932391115856	17.769	0.29736	17.627	17.453	17.75	-0.14278	0.0017974	0.0013722	NaN	26.693	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36987	+		81372	25263	56725	56819							0.016716954037519827
TTKFERVI	8	Unmodified	_TTKFERVI_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.25042724609375	2	497.290017	992.565481	-0.14244	-7.0833E-05	-0.96109	-0.00047794	-1.1035	-0.00054878	497.2896157955258	25.479	0.54537	25.307	25.034	25.579	-0.17151					24	12	3	0	0	0	0.027866	1	1164	1164		42.396	23.293	1	180000	+		81373	24888	56726	56820	90370	90370					0.06890046822900331
TTKFNILID	9	Unmodified	_TTKFNILID_					0	0	0			REV__KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	REV__KCNH7|p.R471K|1|0.09|ENSG00000184611|chr2:162446160-162446160|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.81689453125	2	532.802957	1063.59136	-0.25911	-0.00013805	-0.52819	-0.00028142	-0.7873	-0.00041947	532.8027015888925	86.807	0.33592	86.762	86.554	86.889	-0.045105					12	7	2	0	0	0	0.024539	1	10876	10876		20.947	6.0821	1	87970	+		81374	36171	56727	56821	90371	90371					0.062108962745242025
TTKGSNTVGSI	11	Unmodified	_TTKGSNTVGSI_					0	0	0			REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1	REV__nc|ENSG00000106733|Q9NWW6-2|NMRK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3062744140625	2	532.782753	1063.55095	0.10726	5.7148E-05	-2.1539	-0.0011475	-2.0466	-0.0010904	532.7814860850954	63.631	0.87628	63.372	62.876	63.752	-0.25824					52	22	3	0	0	0	0.024762	1	7180	7180		51.528	19.998	1	1056700	+		81375	21640	56728	56822	90372	90372					0.021719298840935153
TTKKDLKDYF	10	Unmodified	_TTKKDLKDYF_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.2270202636719	3	420.227444	1257.6605	-0.57115	-0.00024001	0.60712	0.00025513	0.035964	1.5113E-05	420.2276237749497	40.425	0.88994	40.275	40.004	40.894	-0.1497					66	23	4	0	0	0	0.65838	2	3518	3506;3518		70.412	21.132	1	4515900			81376	5263	56729	56823	90373;90374	90374					0.041979355034072796
TTKKDLKDYF	10	Unmodified	_TTKKDLKDYF_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.2278747558594	3	420.227444	1257.6605	-0.10291	-4.3246E-05	-0.025474	-1.0705E-05	-0.12839	-5.3951E-05	420.2273745129356	40.58	1.0061	40.355	40.041	41.047	-0.225					71	26	4	0	0	0	0.64214	3	3535	3511;3521;3535		72.243	28.592	1	3878700			81377	5263	56729	56823	90375;90376;90377	90377					0.041979355034072796
TTKKDLKDYF	10	Unmodified	_TTKKDLKDYF_					0	0	0		nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	nc|ENSG00000138668|Q14103-4|HNRNPD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.227783203125	3	420.227444	1257.6605	-1.065	-0.00044755	1.0534	0.00044267	-0.011622	-4.8841E-06	420.2278272732191	40.659	0.88283	40.429	40.12	41.003	-0.23029					74	23	4	0	0	0	0.65838	2	3521	3521;3532		70.412	27.987	1	3449200			81378	5263	56729	56823	90378;90379	90378					0.041979355034072796
TTKKGTVALL	10	Unmodified	_TTKKGTVALL_					0	0	0			REV__nc|ENSG00000067955|Q13951|CBFB	REV__nc|ENSG00000067955|Q13951|CBFB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.3136596679688	2	516.326599	1030.63865	1.2226	0.00063127	-1.9623	-0.0010132	-0.73964	-0.00038189	516.3256903025941	97.94	0.23872	97.816	97.643	97.882	-0.12413					6	5	2	0	0	0	0.03519	1	12133	12133		33.922	0	1	116920	+		81379	36465	56730	56824	90380	90380					0.12455175545528618
TTKKKVLFN	9	Unmodified	_TTKKKVLFN_					0	0	0			REV__OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant;REV__ENSG00000172487|ENST00000533152|OR8J1	REV__ENSG00000172487|ENST00000533152|OR8J1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8319702148438	2	539.834591	1077.65463	-0.4023	-0.00021718	-3.9737	-0.0021451	-4.376	-0.0023623	539.8322808847142	93.639	1.2247	93.639	93.261	94.486	0					88	29	4	0	0	0	0.5973	1	11890	11890		52.937	10.541	1	1708500	+		81380	26677;26196	56731	56825	90381	90381					0.11890881782437646
TTKKKVLFN	9	Unmodified	_TTKKKVLFN_					0	0	0			REV__OR8J3|p.L101Wfs*12|1|0.14|ENSG00000167822|chr11:56137418-56137418|G/-|frameshift_variant;REV__ENSG00000172487|ENST00000533152|OR8J1	REV__ENSG00000172487|ENST00000533152|OR8J1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.8317260742188	2	539.834591	1077.65463	-0.9624	-0.00051954	-3.3719	-0.0018203	-4.3343	-0.0023398	539.8325618672369	93.688	1.1854	93.684	93.242	94.428	-0.0042038					91	28	5	0	0	0	0.35646	1	11851	11851		68.787	14.022	1	1857700	+		81381	26677;26196	56731	56825	90382	90382					0.11890881782437646
TTKKLGTDI	9	Unmodified	_TTKKLGTDI_					0	0	0			REV__nc|ENSG00000105982|Q9H0A6-6|RNF32	REV__nc|ENSG00000105982|Q9H0A6-6|RNF32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.72796630859375	2	488.787307	975.560061	0.23936	0.000117	3.5625	0.0017413	3.8018	0.0018583	488.7887601325272	80.372	0.33232	80.226	80.035	80.368	-0.146					14	7	3	0	0	0	0.024405	1	9598	9598		20.947	0	1	81266	+		81382	21584	56732	56826	90383	90383					0.07130323240448888
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3443603515625	2	589.342978	1176.6714	-2.3876	-0.0014071	2.2516	0.001327	-0.13604	-8.0173E-05	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0327	1	11393	11393		29.551	2.8578	1	4758600			81383	3667	56733	56827	90384	90384					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3433227539062	2	589.342978	1176.6714	-1.6043	-0.00094547	1.3406	0.00079008	-0.26367	-0.00015539	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0233	1	11793	11793		31.634	0.10446	1	12648000			81384	3667	56733	56827	90385	90385					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3432006835938	2	589.342978	1176.6714	-1.3447	-0.00079247	1.0531	0.00062061	-0.29161	-0.00017186	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0183	1	11615	11615		32.751	2.4328	1	13724000			81385	3667	56733	56827	90386	90386					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3434448242188	2	589.342978	1176.6714	0.92698	0.00054631	-1.7437	-0.0010276	-0.8167	-0.00048132	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	0.99689	1	11520	11520		37.508	4.6958	1	4746700			81386	3667	56733	56827	90387	90387					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.34326171875	2	589.342978	1176.6714	-1.3212	-0.00077864	1.2043	0.00070977	-0.11685	-6.8865E-05	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0392	1	10974	10974		28.081	0.19925	1	5175100			81387	3667	56733	56827	90388	90388					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3436889648438	2	589.342978	1176.6714	-0.17644	-0.00010399	0.36596	0.00021568	0.18952	0.00011169	589.343094607947	95.492	2.0638	95.369	94.554	96.618	-0.12251					103	47	4	0	0	0	1.0392	1	11773	11773		28.081	2.5074	1	959980			81388	3667	56733	56827	90389	90389					0.09013337877718186
TTKKLYLIDL	10	Unmodified	_TTKKLYLIDL_					0	0	0			REV__ENST00000216410.7_1_14:53245033-53245099:-|nuORF	REV__ENST00000216410.7_1_14:53245033-53245099:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.2477111816406	3	403.248068	1206.72238	0.52792	0.00021288	-3.3882	-0.0013663	-2.8602	-0.0011534	403.2466960427338	103.28	1.2607	103.29	102.89	104.15	0.0054245					81	31	4	0	0	0	1.1151	1	13204	13204		18.531	0.26896	1	2575000	+		81389	29313	56734	56828	90390	90390					0.12728286922560983
TTKKLYLIDL	10	Unmodified	_TTKKLYLIDL_					0	0	0			REV__ENST00000216410.7_1_14:53245033-53245099:-|nuORF	REV__ENST00000216410.7_1_14:53245033-53245099:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.2469177246094	3	403.248068	1206.72238	0.67687	0.00027295	-3.4336	-0.0013846	-2.7568	-0.0011117	403.24668819074594	103.44	1.2257	103.31	102.83	104.06	-0.12783					74	29	4	0	0	0	1.126	1	12877	12877		24.232	1.6522	1	1613900	+		81390	29313	56734	56828	90391	90391					0.12728286922560983
TTKKLYLIDL	10	Unmodified	_TTKKLYLIDL_					0	0	0			REV__ENST00000216410.7_1_14:53245033-53245099:-|nuORF	REV__ENST00000216410.7_1_14:53245033-53245099:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.24761962890625	3	403.248068	1206.72238	0.064549	2.6029E-05	-3.03	-0.0012218	-2.9654	-0.0011958	403.246861555348	103.54	1.4225	103.37	102.95	104.38	-0.17034					83	36	4	0	0	0	1.126	1	12852	12852		24.232	1.6522	1	1393700	+		81391	29313	56734	56828	90392	90392					0.12728286922560983
TTKKMKKL	8	Unmodified	_TTKKMKKL_					0	0	0		ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.3136291503906	2	489.312438	976.610322	0.44356	0.00021704	2.6008	0.0012726	3.0443	0.0014896	489.31359152290486	94.352	0.88556	94.23	93.842	94.727	-0.12215					55	20	4	0	0	0	1.0574	1	11622	11622		10.866	0	1	1081100			81392	7279	56735	56829	90393	90393					0.1210815436458006
TTKKMKKL	8	Unmodified	_TTKKMKKL_					0	0	0		ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.31390380859375	2	489.312438	976.610322	0.10783	5.2763E-05	2.8686	0.0014036	2.9764	0.0014564	489.3136970750936	94.352	1.0606	94.204	93.869	94.929	-0.14771					55	24	3	0	0	0	1.0574	1	11638	11638		23.042	1.3402	1	908630			81393	7279	56735	56829	90394	90394					0.1210815436458006
TTKKRKKP	8	Unmodified	_TTKKRKKP_					0	0	0		ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.29986572265625	2	493.827101	985.639649	0.082668	4.0824E-05	2.7775	0.0013716	2.8602	0.0014124	493.8283528672914	105.86	0.60603	105.86	105.59	106.2	-0.0013123					28	21	2	0	0	0	0.027866	1	13562	13562		23.042	2.0956	1	80982			81394	3662	56736	56830	90395	90395					0.14625434705078533
TTKLILKAD	9	Unmodified	_TTKLILKAD_					0	0	0			REV__IGSF3|p.G727A|1|0.26|ENSG00000143061|chr1:116588954-116588954|C/G|missense_variant	REV__IGSF3|p.G727A|1|0.26|ENSG00000143061|chr1:116588954-116588954|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.3059997558594	2	501.813325	1001.6121	1.5885	0.00079711	0.053507	2.685E-05	1.642	0.00082396	501.8132880702339	19.208	0.6432	18.974	18.731	19.374	-0.23345					21	12	3	0	0	0	0.024389	1	413	413		60.118	24.5	1	30200	+		81395	36147	56737	56831	90396	90396					0.11135486654177384
TTKNDVNW	8	Unmodified	_TTKNDVNW_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;PICALM|p.G575Dfs*23|1|0.18|ENSG00000073921|chr11:85981184-85981184|C/-|frameshift_variant	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	489.2375183105469	2	489.237981	976.461409	-0.2439	-0.00011933	-0.049282	-2.4111E-05	-0.29319	-0.00014344	489.23786064990395	35.192	0.76654	35.005	34.721	35.488	-0.18675					51	19	4	0	0	0	0.38451	3	2632	2621;2632;2644		99.375	14.459	1	3311900			81396	1520	56738	56832	90397;90398;90399	90398					-0.027762800046275515
TTKRPKLDS	9	Unmodified	_TTKRPKLDS_					0	0	0			REV__ENSG00000121064|ENST00000262288|SCPEP1	REV__ENSG00000121064|ENST00000262288|SCPEP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3034057617188	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.87448	1	10806	10806		34.173	0.65696	1	14210000	+		81397	22577	56739	56833	90400	90400					0.07224530363282611
TTKRPKSID	9	Unmodified	_TTKRPKSID_					0	0	0		nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-2|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3040161132812	2	523.303655	1044.59276	-0.28114	-0.00014712	0.21503	0.00011253	-0.066114	-3.4598E-05	523.3036290350911	89.646	0.60334	89.518	89.242	89.846	-0.12774					45	13	4	0	0	0	0.91321	1	10945	10945		31.53	0	1	897320			81398	847	56740	56834	90401	90401					0.07224530363282611
TTKSTVNKW	9	Unmodified	_TTKSTVNKW_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.7900390625	2	532.790381	1063.56621	-0.27638	-0.00014725	0.083424	4.4448E-05	-0.19296	-0.0001028	532.7903412434198	24.37	0.94394	24.155	23.909	24.853	-0.2151					46	21	4	0	0	0	0.034407	2	1061	1052;1061		138.06	70.569	1	2100400			81399	3380	56741	56835	90402;90403	90403					0.036968414719467546
TTKSTVNKW	9	Unmodified	_TTKSTVNKW_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.790283203125	2	532.790381	1063.56621	-0.58806	-0.00031331	0.78028	0.00041572	0.19221	0.00010241	532.7907010361665	24.227	0.94283	24.052	23.568	24.511	-0.17484					44	21	4	0	0	0	0.18994	2	1027	1027;1038		90.601	35.825	1	1686500			81400	3380	56741	56835	90404;90405	90404					0.036968414719467546
TTKSTVNKW	9	Unmodified	_TTKSTVNKW_					0	0	0		nc|ENSG00000114742|Q8TAF3-5|WDR48;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.7899780273438	2	532.790381	1063.56621	1.7495	0.00093213	-2.2087	-0.0011767	-0.45912	-0.00024461	532.7891302265638	24.23	1.0521	24.049	23.759	24.811	-0.18089					45	23	4	0	0	0	0.094442	3	1002	1002;1013;1026		112.41	59.474	1	1795200			81401	3380	56741	56835	90406;90407;90408	90406					0.036968414719467546
TTKVKKLL	8	Unmodified	_TTKVKKLL_					0	0	0			REV__ENST00000519124.5_1_8:124335233-124335293:-|nuORF	REV__ENST00000519124.5_1_8:124335233-124335293:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7527770996094	2	465.820953	929.627353	-0.43917	-0.00020457	1.0162	0.00047336	0.57702	0.00026879	465.82155008563547	29.455	0.40078	29.458	29.351	29.751	0.0031357					10	9	2	0	0	0	0.027866	1	1838	1838		76.847	24.547	1	31927	+		81402	34251	56742	56836	90409	90409					0.15972398242047348
TTKVPGSTP	9	Unmodified	_TTKVPGSTP_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	444.24444580078125	2	444.245275	886.475997	0.24163	0.00010734	-0.061634	-2.738E-05	0.17999	7.9961E-05	444.24543220448146	102.93	1.3256	102.81	102.15	103.48	-0.12724					79	31	4	0	0	0	0.89441	1	12767	12767		32.812	3.6629	1	6673700			81403	1883	56743	56837	90410	90410					0.028217921435384596
TTLDKVVQDA	10	Unmodified	_TTLDKVVQDA_					0	0	0		ENSG00000198951|ENST00000396398|NAGA	ENSG00000198951|ENST00000396398|NAGA	ENSG00000198951|ENST00000396398|NAGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2919921875	2	545.292953	1088.57135	-1.1667	-0.00063618	-1.4858	-0.00081018	-2.6524	-0.0014464	545.2920050413636	46.383	0.69634	46.181	45.744	46.441	-0.20226					60	18	4	0	0	0	0.58878	1	4468	4468		78.264	2.0941	1	2485500			81404	10261	56744	56838	90411	90411					0.03061100543914108
TTLDLEELLV	10	Unmodified	_TTLDLEELLV_					0	0	0			REV__ENSG00000101098|ENST00000372851|RIMS4	REV__ENSG00000101098|ENST00000372851|RIMS4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2791137695312	2	573.318637	1144.62272	0.79902	0.00045809	0.2326	0.00013335	1.0316	0.00059145	573.3197724498652	77.669	0.80438	77.427	77.148	77.952	-0.24232					38	18	3	0	0	0	0.03519	1	9267	9267		20.947	0	1	999060	+		81405	21183	56745	56839	90412	90412					0.0561942451795403
TTLDRSKR	8	Unmodified	_TTLDRSKR_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.78271484375	2	488.780348	975.546142	0.16432	8.0315E-05	3.2344	0.0015809	3.3987	0.0016612	488.7818646070015	40.311	1.7687	40.311	39.627	41.396	0					137	49	4	0	0	0	0.59392	1	3512	3512		76.847	2.5916	1	10770000			81406	971	56746	56840	90413	90413					0.057390905319948615
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENST00000474371.1_1_1:32689659-32696621:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.7879028320312	2	552.787838	1103.56112	-0.77882	-0.00043052	0.18442	0.00010194	-0.59441	-0.00032858	552.7878869321944	29.622	1.0634	29.377	29.099	30.162	-0.24524					64	24	4	0	0	0	0.012922	3	1837	1824;1837;1849		172.25	92.798	1	3375100			81407	1771	56747	56841	90414;90415;90416	90415					0.013485376093285595
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENST00000474371.1_1_1:32689659-32696621:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.7877197265625	2	552.787838	1103.56112	-0.67276	-0.0003719	0.13212	7.3036E-05	-0.54064	-0.00029886	552.7878353999691	29.557	1.0185	29.385	29.07	30.088	-0.17258					60	23	4	0	0	0	0.018708	4	1811	1801;1811;1823;1837		214.23	112.98	1	3157000			81408	1771	56747	56841	90417;90418;90419;90420	90418					0.013485376093285595
TTLEHQKTF	9	Unmodified	_TTLEHQKTF_					0	0	0		ENST00000474371.1_1_1:32689659-32696621:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	ENST00000474371.1_1_1:32689659-32696621:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.7879638671875	2	552.787838	1103.56112	-0.27441	-0.00015169	-0.2815	-0.00015561	-0.55591	-0.0003073	552.787591248836	29.543	0.96919	29.394	29.087	30.056	-0.14952					66	22	4	0	0	0	0.012922	3	1793	1793;1804;1819		172.25	95.474	1	3237700			81409	1771	56747	56841	90421;90422;90423	90421					0.013485376093285595
TTLEQPPSV	9	Unmodified	_TTLEQPPSV_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2557373046875	2	486.25584	970.497126	-0.40332	-0.00019611	0.45468	0.00022109	0.051365	2.4977E-05	486.2559129640471	53.162	1.4291	53.162	52.513	53.942	0					95	38	4	0	0	0	0.094442	3	5733	5721;5733;5758		112.41	24.714	1	5329000			81410	4506	56748	56842	90424;90425;90426	90425					0.01069757452387421
TTLEQPPSV	9	Unmodified	_TTLEQPPSV_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.256103515625	2	486.25584	970.497126	-0.66244	-0.00032211	0.90163	0.00043842	0.2392	0.00011631	486.25607927494997	53.237	1.548	53.089	52.406	53.954	-0.14724					102	41	5	0	0	0	0.053401	3	5728	5705;5715;5728		127.46	36.685	1	5141500			81411	4506	56748	56842	90427;90428;90429	90429					0.01069757452387421
TTLEQPPSV	9	Unmodified	_TTLEQPPSV_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2561340332031	2	486.25584	970.497126	-0.60469	-0.00029403	0.7322	0.00035604	0.12752	6.2007E-05	486.2560050457244	52.983	1.2876	53.079	52.449	53.736	0.095669					94	34	5	0	0	0	0.014034	3	5633	5622;5633;5646		166.68	65.078	1	5802900			81412	4506	56748	56842	90430;90431;90432	90431					0.01069757452387421
TTLEQPPSV	9	Unmodified	_TTLEQPPSV_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.25584	970.497126	0.028362	1.3791E-05	-0.72634	-0.00035319	-0.69798	-0.0003394	486.25535262656416	53.531	0.84034	53.272	52.803	53.643	-0.25838	0.10544	-0.0010588	NaN	166.68	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024300			81413	4506	56748	56842							0.01069757452387421
TTLEQPPSV	9	Unmodified	_TTLEQPPSV_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.25584	970.497126	0.10247	4.9825E-05	-0.69333	-0.00033714	-0.59086	-0.00028731	486.25537372476714	53.429	0.90382	53.231	52.746	53.65	-0.19739	0.064648	-0.0010267	NaN	166.68	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955200			81414	4506	56748	56842							0.01069757452387421
TTLFINDTI	9	Unmodified	_TTLFINDTI_					0	0	0			REV__nc|ENSG00000065833|P48163-2|ME1	REV__nc|ENSG00000065833|P48163-2|ME1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2804565429688	2	519.279315	1036.54408	-0.16983	-8.819E-05	0.33173	0.00017226	0.1619	8.4073E-05	519.2793269530661	77.538	0.93553	77.376	77.059	77.994	-0.16196					38	21	3	0	0	0	0.62163	1	9226	9226		51.335	1.8939	1	1309900	+		81415	20322	56749	56843	90433	90433					0.027266170035318282
TTLFNQLNI	9	Unmodified	_TTLFNQLNI_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.2957153320312	2	532.292756	1062.57096	-0.4973	-0.00026471	4.0853	0.0021746	3.588	0.0019099	532.2947155372891	101.1	0.86356	101.11	100.79	101.65	0.0090256					50	19	4	0	0	0	0.19099	1	12898	12898		90.37	5.209	1	1075800	+		81416	29044	56750	56844	90434	90434					0.04217725614716983
TTLFNQLNI	9	Unmodified	_TTLFNQLNI_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	532.292756	1062.57096	0.25514	0.00013581	2.7988	0.0014898	3.054	0.0016256	532.2940081245313	101.61	0.63959	101.48	101.22	101.86	-0.13156	0.25402	-0.0010974	NaN	90.37	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49233	+		81417	29044	56750	56844							0.04217725614716983
TTLGAQAPSFP	11	Unmodified	_TTLGAQAPSFP_					0	0	0			REV__ENSG00000196531|ENST00000454682|NACA	REV__ENSG00000196531|ENST00000454682|NACA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2760009765625	2	545.282389	1088.55022	-0.65808	-0.00035884	-1.7689	-0.00096456	-2.427	-0.0013234	545.2810248585862	73.642	0.59623	73.452	73.047	73.643	-0.19026					18	14	2	0	0	0	0.024771	1	8605	8605		42.864	2.2917	1	181570	+		81418	28191	56751	56845	90435	90435					0.009491352350551097
TTLGAQAPSFP	11	Unmodified	_TTLGAQAPSFP_					0	0	0			REV__ENSG00000196531|ENST00000454682|NACA	REV__ENSG00000196531|ENST00000454682|NACA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	545.282389	1088.55022	-0.38431	-0.00020956	-2.2379	-0.0012203	-2.6222	-0.0014298	545.2806293311703	73.702	0.43156	73.425	73.214	73.645	-0.2769	-0.013457	-0.00021363	NaN	42.864	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201410	+		81419	28191	56751	56845							0.009491352350551097
TTLHAVEK	8	Unmodified	_TTLHAVEK_					0	0	0		ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2066955566406	2	449.753267	897.491981	0.37729	0.00016969	0.65529	0.00029472	1.0326	0.00046441	449.7531819355677	22.539	0.4178	22.337	22.097	22.515	-0.20198					15	8	2	0	0	0	0.027866	1	798	798		28.254	0	1	28083			81420	10466	56752	56846	90436	90436					0.03913498380427427
TTLHRLLAL	9	Unmodified	_TTLHRLLAL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000534210.6_1_11:6559916-6579528:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.3270263671875	2	519.326934	1036.63931	0.068286	3.5463E-05	-0.11016	-5.7211E-05	-0.041877	-2.1748E-05	519.3267295811261	68.869	1.1359	68.576	68.251	69.387	-0.29267					46	29	2	0	0	0	0.12602	2	8238	8238;8250		104.75	10.875	1	5214800			81421	8901	56753	56847	90437;90438	90437					0.12246014985225884
TTLHRLLAL	9	Unmodified	_TTLHRLLAL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000534210.6_1_11:6559916-6579528:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.3272705078125	2	519.326934	1036.63931	-0.16639	-8.641E-05	0.082068	4.262E-05	-0.084319	-4.3789E-05	519.3268692064853	68.572	1.0775	68.591	68.314	69.392	0.018913					46	28	2	0	0	0	0.14024	2	8155	8155;8166		101.6	13.846	1	4698200			81422	8901	56753	56847	90439;90440	90439					0.12246014985225884
TTLIFVGRICV	11	Unmodified	_TTLIFVGRICV_					0	0	0			REV__ENSG00000205060|ENST00000378509|SLC35B4	REV__ENSG00000205060|ENST00000378509|SLC35B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3560180664062	2	611.354834	1220.69511	-0.32068	-0.00019605	2.5162	0.0015383	2.1955	0.0013422	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	0.98904	1	11913	11913		39.253	2.8061	1	11218000	+		81423	28656	56754	56848	90441	90441					0.09359480110538243
TTLIFVGRICV	11	Unmodified	_TTLIFVGRICV_					0	0	0			REV__ENSG00000205060|ENST00000378509|SLC35B4	REV__ENSG00000205060|ENST00000378509|SLC35B4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3566284179688	2	611.354834	1220.69511	-1.8097	-0.0011063	3.9907	0.0024397	2.181	0.0013334	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.0238	1	11683	11683		31.53	1.2121	1	13060000	+		81424	28656	56754	56848	90442	90442					0.09359480110538243
TTLKLYRP	8	Unmodified	_TTLKLYRP_					0	0	0			REV__ENST00000392062.6_1_2:227704325-227729364:+|nuORF	REV__ENST00000392062.6_1_2:227704325-227729364:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.7746887207031	2	496.300384	990.586216	-0.078345	-3.8883E-05	-0.013808	-6.8531E-06	-0.092153	-4.5736E-05	496.3003026746905	73.167	0.57112	73.176	72.986	73.558	0.0096512					21	14	2	0	0	0	0.027866	1	8837	8837		50.025	0	1	136420	+		81425	30635	56755	56849	90443	90443					0.0905463720255284
TTLLIPLL	8	Unmodified	_TTLLIPLL_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2593688964844	2	442.296779	882.579005	-0.20144	-8.9098E-05	1.9883	0.00087944	1.7869	0.00079034	442.2983152437615	27.347	0.51112	27.334	27.134	27.645	-0.012983					19	13	2	0	0	0	0.027866	1	1490	1490		29.842	1.5873	1	108340	+		81426	28454	56756	56850	90444	90444					0.13301904602133163
TTLLIPLL	8	Unmodified	_TTLLIPLL_					0	0	0			REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	REV__nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.296779	882.579005	-0.34203	-0.00015128	7.2079	0.003188	6.8659	0.0030368	442.299046919057	27.524	0.47361	27.524	27.179	27.653	0	0.094916	0.0022139	NaN	29.842	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115110	+		81427	28454	56756	56850							0.13301904602133163
TTLLRPGTA	9	Unmodified	_TTLLRPGTA_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.73162841796875	2	465.274367	928.53418	-0.036224	-1.6854E-05	0.69648	0.00032406	0.66026	0.0003072	465.2739206119589	40.306	0.29037	40.329	40.237	40.527	0.023006					10	7	2	0	0	0	0.024436	1	3488	3488		10.866	3.1753	1	138240			81428	1254	56757	56851	90445	90445					0.06705473788804284
TTLLRPGTA	9	Unmodified	_TTLLRPGTA_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.274367	928.53418	0.0034424	1.6017E-06	-0.18695	-8.6982E-05	-0.1835	-8.538E-05	465.2738265988908	40.149	0.32318	40.149	40.024	40.347	0	-0.09015	-0.00042743	NaN	6.3127	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125630			81429	1254	56757	56851							0.06705473788804284
TTLLSCTNW	9	Unmodified	_TTLLSCTNW_					0	0	0			REV__ENST00000592094.1_1_17:41454936-41458731:-|nuORF	REV__ENST00000592094.1_1_17:41454936-41458731:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2324829101562	2	519.749867	1037.48518	-0.18588	-9.661E-05	-0.52135	-0.00027097	-0.70722	-0.00036758	519.7496130665302	45.795	0.4904	45.698	45.359	45.849	-0.096653					17	13	2	0	0	0	0.024257	1	4358	4358		67.494	19.578	1	371660	+		81430	35739	56758	56852	90446	90446					-0.032061825624850826
TTLLSCTNW	9	Unmodified	_TTLLSCTNW_					0	0	0			REV__ENST00000592094.1_1_17:41454936-41458731:-|nuORF	REV__ENST00000592094.1_1_17:41454936-41458731:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	519.749867	1037.48518	-0.63775	-0.00033147	-1.1859	-0.00061635	-1.8236	-0.00094782	519.7490560798244	45.622	0.30598	45.622	45.478	45.784	0	-0.035554	-8.3233E-05	NaN	67.494	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182220	+		81431	35739	56758	56852							-0.032061825624850826
TTLLTRLCP	9	Unmodified	_TTLLTRLCP_					0	0	0			REV__ENST00000561463.1_1_15:102312101-102312521:+|nuORF	REV__ENST00000561463.1_1_15:102312101-102312521:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.30181884765625	2	509.291702	1016.56885	-0.18552	-9.4483E-05	-0.91417	-0.00046558	-1.0997	-0.00056006	509.29002146631564	55.887	0.58718	55.731	55.48	56.067	-0.15601					29	15	3	0	0	0	0.024263	1	6218	6218		42.396	0	1	674890	+		81432	35174	56759	56853	90447	90447					0.061229736052496264
TTLNTHKL	8	Unmodified	_TTLNTHKL_					0	0	0		ENST00000607044.1_1_3:158519393-158519720:-|nuORF	ENST00000607044.1_1_3:158519393-158519720:-|nuORF	ENST00000607044.1_1_3:158519393-158519720:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2667541503906	2	464.266542	926.51853	0.83634	0.00038828	-0.76388	-0.00035464	0.072455	3.3639E-05	464.2660847026912	42.784	0.90475	42.81	42.393	43.298	0.026012					57	24	3	0	0	0	1.0009	1	3919	3919		37.159	1.5408	1	3667800			81433	17573	56760	56854	90448	90448					0.052331872717559236
TTLPGRLCL	9	Carbamidomethyl (C)	_TTLPGRLC(Carbamidomethyl (C))L_	TTLPGRLC(1)L		TTLPGRLC(93)L		0	1	0		ENST00000366691.3_1_1:228871285-228871396:+|nuORF	ENST00000366691.3_1_1:228871285-228871396:+|nuORF	ENST00000366691.3_1_1:228871285-228871396:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.7870483398438	2	515.789327	1029.5641	0.844	0.00043533	-3.4542	-0.0017817	-2.6102	-0.0013463	515.7874990809202	59.678	0.82842	59.481	59.009	59.838	-0.19742					46	20	4	0	0	0	0.17822	1	6596	6596		93.195	18.152	1	2503300			81434	12824	56761	56855	90449	90449	173				0.05050089462474716
TTLPGRLCL	9	Carbamidomethyl (C)	_TTLPGRLC(Carbamidomethyl (C))L_	TTLPGRLC(1)L		TTLPGRLC(93)L		0	1	0		ENST00000366691.3_1_1:228871285-228871396:+|nuORF	ENST00000366691.3_1_1:228871285-228871396:+|nuORF	ENST00000366691.3_1_1:228871285-228871396:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7875366210938	2	515.789327	1029.5641	0.64383	0.00033208	-3.27	-0.0016866	-2.6261	-0.0013545	515.7875413879261	59.55	1.0174	59.374	58.796	59.813	-0.1761					58	25	4	0	0	0	0.17822	1	6584	6584		93.195	18.152	1	2594400			81435	12824	56761	56855	90450	90450	173				0.05050089462474716
TTLPRAPPLP	10	Unmodified	_TTLPRAPPLP_					0	0	0		ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8167114257812	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.1286	1	10546	10546		25.574	1.3713	1	4853400			81436	17287	56762	56856	90451	90451					0.09498308748334239
TTLSGAPCQP	10	Unmodified	_TTLSGAPCQP_					0	0	0		ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	ENSG00000131187|ENST00000253496|F12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.798095703125	2	487.734217	973.453881	-1.3535	-0.00066013	-1.7953	-0.00087564	-3.1488	-0.0015358	487.7331289237014	49.526	0.96843	49.6	49.204	50.173	0.074192					55	26	3	0	0	0	0.03519	1	5132	5132		34.173	23.988	1	702800			81437	4505	56763	56857	90452	90452					-0.03390755596547024
TTLSQWKI	8	Unmodified	_TTLSQWKI_					0	0	0		nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1;ENSG00000101938|ENST00000372042|CHRDL1	nc|ENSG00000101938|Q9BU40-3|CHRDL1	nc|ENSG00000101938|Q9BU40-3|CHRDL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.77996826171875	2	488.776742	975.538931	-0.066352	-3.2431E-05	-0.50672	-0.00024767	-0.57308	-0.00028011	488.77649131624526	55.534	0.83105	55.303	54.963	55.794	-0.23087					73	23	5	0	0	0	0.6536	1	5964	5964		71.296	0	1	4660900			81438	2362	56764	56858	90453	90453					0.05018357931567152
TTLTHHKC	8	Unmodified	_TTLTHHKC_					0	0	0		ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED;ENST00000327320.8_2_11:85989390-85989564:+|nuORF;ENST00000528250.1_1_11:85988947-85989564:+|nuORF	ENSG00000074266|ENST00000263360|EED	ENSG00000074266|ENST00000263360|EED	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.7551574707031	2	470.737094	939.459635	0.19313	9.0913E-05	2.5083	0.0011807	2.7014	0.0012717	470.7373611957718	37.369	0.25166	37.306	37.163	37.415	-0.063389					10	6	2	0	0	0	0.027866	1	3044	3044		38.806	0	1	55603			81439	1526	56765	56859	90454	90454					-0.012516122942315633
TTLTLRKL	8	Unmodified	_TTLTLRKL_					0	0	0			REV__ENSG00000122591|ENST00000432176|HYCC1	REV__ENSG00000122591|ENST00000432176|HYCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.3081970214844	2	473.30821	944.601866	1.408	0.00066641	-1.3361	-0.0006324	0.071873	3.4018E-05	473.30738941918133	17.637	0.59793	17.483	17.308	17.906	-0.15403					25	11	3	0	0	0	1.0338	1	211	211		31.955	4.0726	1	207490	+		81440	22655	56766	56860	90455	90455					0.12734923719619928
TTLTLRKL	8	Unmodified	_TTLTLRKL_					0	0	0			REV__ENSG00000122591|ENST00000432176|HYCC1	REV__ENSG00000122591|ENST00000432176|HYCC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.30821	944.601866	0.0056062	2.6534E-06	0.25687	0.00012158	0.26248	0.00012423	473.3084635344526	17.955	0.14891	17.748	17.664	17.813	-0.20669	0.13271	0.0013886	NaN	31.955	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14422	+		81441	22655	56766	56860							0.12734923719619928
TTLVAKSSA	9	Unmodified	_TTLVAKSSA_					0	0	0			REV__ENST00000399767.5_1_22:18226574-18257190:-|nuORF	REV__ENST00000399767.5_1_22:18226574-18257190:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2521667480469	2	439.2531	876.491647	0.31156	0.00013685	-1.6579	-0.00072826	-1.3464	-0.00059141	439.25231035470904	90.063	1.0299	90.046	89.541	90.571	-0.016708					62	24	4	0	0	0	0.97973	1	11377	11377		24.519	0.31644	1	1995100	+		81442	31839	56767	56861	90456	90456					0.04846078660580133
TTLVDNNTW	9	Unmodified	_TTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.2559204101562	2	532.256371	1062.49819	-0.30529	-0.00016249	-1.1147	-0.00059331	-1.42	-0.0007558	532.2556063917098	62.659	1.3981	62.438	62.084	63.482	-0.22097					72	37	3	0	0	0	0.015841	4	7038	7038;7048;7056;7065		200.16	105.04	1	6153100			81443	7098	56768	56862	90457;90458;90459;90460	90457					-0.030560281787074928
TTLVDNNTW	9	Unmodified	_TTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2573852539062	2	532.256371	1062.49819	-1.1283	-0.00060054	-0.61919	-0.00032957	-1.7475	-0.00093011	532.2559322414736	62.59	1.4657	62.406	62.035	63.501	-0.18386					83	42	4	0	0	0	0.013887	5	7061	7040;7048;7057;7061;7065		215.39	107.3	1	6918900			81444	7098	56768	56862	90461;90462;90463;90464;90465	90464					-0.030560281787074928
TTLVDNNTW	9	Unmodified	_TTLVDNNTW_					0	0	0		ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	ENSG00000163527|ENST00000295770|STT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.2568359375	2	532.256371	1062.49819	-0.49075	-0.0002612	-0.29608	-0.00015759	-0.78683	-0.0004188	532.2560301656722	62.73	1.0653	62.472	62.173	63.239	-0.25824					70	29	3	0	0	0	0.013887	4	7059	7039;7049;7059;7071		200.16	106.15	1	5820700			81445	7098	56768	56862	90466;90467;90468;90469	90468					-0.030560281787074928
TTLVENKKA	9	Unmodified	_TTLVENKKA_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000441433.1_1_7:26961755-26962307:+|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000441433.1_1_7:26961755-26962307:+|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7542419433594	2	502.292756	1002.57096	0.068898	3.4607E-05	-0.25943	-0.00013031	-0.19053	-9.5703E-05	502.29264315810326	26.097	0.83519	26.178	25.836	26.671	0.081293					36	19	3	0	0	0	0.023417	1	1236	1236		68.787	7.8149	1	242760			81446	14886;6017;14362;13674	56769	56863	90470	90470					0.06977725614717656
TTLVENKKA	9	Unmodified	_TTLVENKKA_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000441433.1_1_7:26961755-26962307:+|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000441433.1_1_7:26961755-26962307:+|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.292756	1002.57096	-0.66926	-0.00033616	-3.1596	-0.0015871	-3.8289	-0.0019232	502.2902084481601	26.469	0.21182	26.233	26.13	26.341	-0.23603	0.0050246	-0.0036919	NaN	68.787	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85702			81447	14886;6017;14362;13674	56769	56863							0.06977725614717656
TTLVENKKA	9	Unmodified	_TTLVENKKA_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000441433.1_1_7:26961755-26962307:+|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF;ENST00000424559.2_1_22:19780074-19780431:+|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000441433.1_1_7:26961755-26962307:+|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.292756	1002.57096	-1.1951	-0.0006003	5.8192	0.002923	4.6241	0.0023227	502.295027742149	26.363	0.20626	26.2	26.101	26.307	-0.16331	-0.028027	0.0053282	NaN	68.787	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60177			81448	14886;6017;14362;13674	56769	56863							0.06977725614717656
TTLVGCILSV	10	Unmodified	_TTLVGCILSV_					0	0	0		ENSG00000181754|ENST00000369864|AMIGO1	ENSG00000181754|ENST00000369864|AMIGO1	ENSG00000181754|ENST00000369864|AMIGO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.3045959472656	2	503.286085	1004.55762	-0.30274	-0.00015236	-2.7375	-0.0013778	-3.0403	-0.0015301	503.2847898668001	96.04	0.79393	96.04	95.562	96.356	0					28	18	2	0	0	0	0.03519	1	12222	12222		51.193	18.38	1	713760			81449	9065	56770	56864	90471	90471					0.055521515111195185
TTLVKLTFPN	10	Unmodified	_TTLVKLTFPN_					0	0	0			REV__nc|ENSG00000163531|O94856-2|NFASC	REV__nc|ENSG00000163531|O94856-2|NFASC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3297729492188	2	567.331882	1132.64921	-0.025912	-1.4701E-05	-3.6495	-0.0020705	-3.6754	-0.0020852	567.3297015547128	93.386	0.56843	93.242	92.914	93.483	-0.1441					23	12	2	0	0	0	1.118	1	11468	11468		30.318	1.1477	1	914870	+		81450	25585	56771	56865	90472	90472					0.0881915819995811
TTLWHFQRNQ	10	Unmodified	_TTLWHFQRNQ_					0	0	0		ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2244873046875	3	444.226549	1329.65782	0.089223	3.9635E-05	-1.3063	-0.00058029	-1.2171	-0.00054065	444.22629870147716	29.733	0.8022	29.583	29.254	30.056	-0.14952					32	18	3	0	0	0	0.03519	1	1882	1882		20.03	14.618	1	108310			81451	10538	56772	56866	90473	90473					0.006175248891395313
TTLYIPRTAD	10	Unmodified	_TTLYIPRTAD_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.7825927734375	2	575.808771	1149.60299	-0.1753	-0.00010094	0.42263	0.00024336	0.24734	0.00014242	576.3099533387145	66.145	0.28142	65.903	65.706	65.988	-0.24145					9	6	2	0	0	0	0.03519	1	7580	7580		19.104	0	1	104010			81452	1082	56773	56867	90474	90474					0.034170932978668134
TTMERLLVQ	9	Unmodified	_TTMERLLVQ_					0	0	0		nc|ENSG00000053524|Q86YR7-2|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:183027559-183118319:-|nuORF;nc|ENSG00000053524|Q86YR7-3|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	nc|ENSG00000053524|Q86YR7-2|MCF2L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.2824096679688	2	545.799891	1089.58523	0.058156	3.1741E-05	-1.6126	-0.00088017	-1.5545	-0.00084843	545.7995991100765	51.692	0.69709	51.573	51.242	51.939	-0.11876					38	18	3	0	0	0	0.024457	1	5292	5292		10.265	0	1	360120			81453	1161	56774	56868	90475	90475					0.0440205477134441
TTMLNQMNYPQ	11	Unmodified	_TTMLNQMNYPQ_					0	0	0			REV__nc|ENSG00000185359|O14964-2|HGS	REV__nc|ENSG00000185359|O14964-2|HGS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.25860595703125	3	447.537296	1339.59006	-0.043832	-1.9616E-05	2.6365	0.0011799	2.5927	0.0011603	447.5383524495245	42.439	0.60171	42.465	42.152	42.754	0.026012					38	16	3	0	0	0	0.024834	1	3865	3865		12.957	0	1	646520	+		81454	27758	56775	56869	90476	90476					-0.06615429148178009
TTMTRTKVTI	10	Unmodified	_TTMTRTKVTI_					0	0	0			REV__ENST00000556034.1_1_15:22567057-22567180:+|nuORF	REV__ENST00000556034.1_1_15:22567057-22567180:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.3256225585938	2	576.326273	1150.63799	-1.0202	-0.00058799	1.6305	0.0009397	0.61028	0.00035172	576.3272480902892	104.22	0.55005	104.22	103.98	104.53	0					33	12	4	0	0	0	0.62431	1	13378	13378		74.255	2.9593	1	459450	+		81455	35022	56776	56870	90477	90477					0.06870012834156114
TTMTRTKVTI	10	Unmodified	_TTMTRTKVTI_					0	0	0			REV__ENST00000556034.1_1_15:22567057-22567180:+|nuORF	REV__ENST00000556034.1_1_15:22567057-22567180:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.3234252929688	2	576.326273	1150.63799	-0.24848	-0.00014321	0.73635	0.00042438	0.48787	0.00028117	576.326755514441	104.23	0.57338	104.23	103.98	104.55	-0.0032196					35	13	4	0	0	0	0.62431	1	13321	13321		74.255	2.3776	1	411850	+		81456	35022	56776	56870	90478	90478					0.06870012834156114
TTMVVGALVK	10	Unmodified	_TTMVVGALVK_					0	0	0			REV__nc|ENSG00000197381|P78563-3|ADARB1	REV__nc|ENSG00000197381|P78563-3|ADARB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8069152832031	2	509.801903	1017.58925	0.60396	0.0003079	2.6714	0.0013619	3.2753	0.0016698	509.80316832379725	83.279	2.7899	83.067	81.496	84.286	-0.21159					160	64	4	0	0	0	0.91678	1	10078	10078		52.937	1.6012	1	1089300	+		81457	37062	56777	56871	90479	90479					0.08116144265068215
TTNIQCKNGK	10	Unmodified	_TTNIQCKNGK_					0	0	0		ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	ENSG00000258818|ENST00000555835|RNASE4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.782958984375	2	553.784773	1105.55499	0.26248	0.00014536	-4.0936	-0.0022669	-3.8311	-0.0021216	553.782490316632	82.752	2.1822	82.571	82.201	84.383	-0.18079					95	50	2	0	0	0	0.66532	1	10018	10018		69.628	2.134	1	5008800			81458	10930	56778	56872	90480	90480					0.006436961061581314
TTNKKFALAL	10	Unmodified	_TTNKKFALAL_					0	0	0			REV__RPP38|p.E237Pfs*20|1|0.05|ENSG00000152464|chr10:15104022-15104023|-/CCACA|frameshift_variant	REV__RPP38|p.E237Pfs*20|1|0.05|ENSG00000152464|chr10:15104022-15104023|-/CCACA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8304443359375	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	1.0992	1	10720	10720		32.812	0	1	1623500	+		81459	24843	56779	56873	90481	90481					0.10094577919790026
TTNKYKAFL	9	Unmodified	_TTNKYKAFL_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000465522.5_1_2:182322141-182350724:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4;ENST00000465522.5_1_2:182322141-182350724:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.7732543945312	2	543.303124	1084.5917	-0.21814	-0.00011851	-2.6124	-0.0014193	-2.8305	-0.0015378	543.301492603659	74.601	0.30688	74.326	74.089	74.396	-0.27573					16	6	3	0	0	0	0.02435	1	8771	8771		51.335	8.861	1	1383300			81460	3420;14786	56780	56874	90482	90482					0.05278315994382865
TTNPKLVSI	9	Unmodified	_TTNPKLVSI_					0	0	0		nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;POGZ-SLC6A13|4|fusion;POGZ-SLC6A13|3|fusion	nc|ENSG00000143442|Q7Z3K3-7|POGZ	nc|ENSG00000143442|Q7Z3K3-7|POGZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2977294921875	2	486.78985	971.565146	-0.13202	-6.4265E-05	0.52637	0.00025623	0.39435	0.00019197	486.78995086750666	67.692	0.40347	67.403	67.108	67.511	-0.28834					16	9	3	0	0	0	0.024344	1	8040	8040		37.812	0	1	335570			81461	18346	56781	56875	90483	90483					0.07822627103041668
TTNPYSTIM	9	Unmodified	_TTNPYSTIM_					0	0	0			REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2869262695312	2	514.241875	1026.4692	-0.43499	-0.00022369	0.32753	0.00016843	-0.10746	-5.526E-05	514.2415877421806	72.274	0.58797	72.076	71.909	72.497	-0.19811					24	13	3	0	0	0	0.024436	1	8478	8478		38.806	18.324	1	137800	+		81462	19710	56782	56876	90484	90484					-0.042978887993513126
TTNQCARSLI	10	Unmodified	_TTNQCARSLI_					0	0	0			REV__ENST00000515401.1_1_5:33881531-33891900:-|nuORF	REV__ENST00000515401.1_1_5:33881531-33891900:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.78271484375	2	553.784773	1105.55499	0.26248	0.00014536	-4.0936	-0.0022669	-3.8311	-0.0021216	553.782490316632	82.752	2.1822	82.571	82.201	84.383	-0.18079					95	50	2	0	0	0	0.47897	1	9970	9970		90.601	2.8466	1	5008800	+		81463	34195	56783	56877	90485	90485					0.006436961061581314
TTPADKSEL	9	Unmodified	_TTPADKSEL_					0	0	0		nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	nc|ENSG00000184792|Q969R2-2|OSBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2459716796875	2	481.245472	960.476391	-0.55026	-0.00026481	0.65665	0.00031601	0.10639	5.1199E-05	481.24583150440225	60.6	1.0385	60.6	60.256	61.295	0					70	27	4	0	0	0	0.03849	1	6962	6962		134.81	16.068	1	10283000			81464	9369	56784	56878	90486	90486					-0.0054283292729451205
TTPDHTCLNRY	11	Unmodified	_TTPDHTCLNRY_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.78533935546875	3	440.871555	1319.59283	0.18477	8.1461E-05	-2.3676	-0.0010438	-2.1828	-0.00096234	440.8703987060673	19.077	0.7378	18.958	18.61	19.348	-0.11872					25	14	2	0	0	0	0.024792	1	317	317		18.531	3.8374	1	31031	+		81465	20567	56785	56879	90487	90487					-0.054178376990421384
TTPKAPLFV	9	Unmodified	_TTPKAPLFV_					0	0	0			REV__nc|ENSG00000153563|P01732-2|CD8A	REV__nc|ENSG00000153563|P01732-2|CD8A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.28973388671875	2	487.289485	972.564418	-0.66796	-0.00032549	0.64189	0.00031278	-0.026071	-1.2704E-05	487.2897074963042	93.238	1.2486	93.245	92.844	94.093	0.0077286					46	29	2	0	0	0	0.4752	1	11779	11779		60.972	5.4677	1	1542700	+		81466	24907	56786	56880	90488	90488					0.07703832454001258
TTPKAPLFV	9	Unmodified	_TTPKAPLFV_					0	0	0			REV__nc|ENSG00000153563|P01732-2|CD8A	REV__nc|ENSG00000153563|P01732-2|CD8A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.289485	972.564418	0.099838	4.865E-05	0.87519	0.00042647	0.97502	0.00047512	487.2896472070372	93.204	0.74031	93.082	92.67	93.41	-0.12215	-0.12186	0.0004973	NaN	60.972	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37818	+		81467	24907	56786	56880							0.07703832454001258
TTPKMLTLL	9	Unmodified	_TTPKMLTLL_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.3057556152344	2	509.304278	1016.594	0.056026	2.8534E-05	3.3679	0.0017153	3.4239	0.0017438	509.30586273305124	92	1.5619	91.858	91.442	93.004	-0.14131					109	36	5	0	0	0	0.91321	1	11307	11307		31.53	3.6476	1	3302600	+		81468	27815	56787	56881	90489	90489					0.08637028407838443
TTPLLLVLLY	10	Unmodified	_TTPLLLVLLY_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.7542114257812	2	573.36265	1144.71075	-0.63489	-0.00036402	-2.0696	-0.0011866	-2.7045	-0.0015507	573.3612982271261	52.261	0.54111	52.143	51.939	52.48	-0.11875					30	13	3	0	0	0	0.03519	1	5407	5407		50.025	19.521	1	464050			81469	7063	56788	56882	90490	90490					0.14418089899231745
TTPLLLVLLY	10	Unmodified	_TTPLLLVLLY_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.7537231445312	2	573.36265	1144.71075	-0.66378	-0.00038059	-2.3091	-0.0013239	-2.9729	-0.0017045	573.3611466277722	52.58	0.46387	52.315	52.094	52.557	-0.26487					28	11	3	0	0	0	0.03519	1	5437	5437		50.025	25.822	1	414610			81470	7063	56788	56882	90491	90491					0.14418089899231745
TTPLLLVLLY	10	Unmodified	_TTPLLLVLLY_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	573.36265	1144.71075	-1.0947	-0.00062768	-1.3307	-0.00076299	-2.4255	-0.0013907	573.3617318160146	52.405	1.1094	52.405	52.123	53.232	0	0.080484	0.00088108	NaN	50.025	63	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1363000			81471	7063	56788	56882							0.14418089899231745
TTPLLLVLLY	10	Unmodified	_TTPLLLVLLY_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	573.36265	1144.71075	0.36403	0.00020872	-2.793	-0.0016014	-2.429	-0.0013927	573.3609313712697	52.548	0.89056	52.401	52.057	52.948	-0.14723	0.07591	-0.00079576	NaN	50.025	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1083200			81472	7063	56788	56882							0.14418089899231745
TTPLLLVLLY	10	Unmodified	_TTPLLLVLLY_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	573.36265	1144.71075	-0.63504	-0.00036411	-2.2	-0.0012614	-2.835	-0.0016255	573.3612556674474	52.373	1.2478	52.465	52.119	53.367	0.091938	0.13977	-0.0001157	NaN	50.025	69	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1547600			81473	7063	56788	56882							0.14418089899231745
TTPLLSFLK	9	Unmodified	_TTPLLSFLK_					0	0	0		ENSG00000125351|ENST00000276201|UPF3B;ENST00000478840.1_1_X:118974578-118977244:-|nuORF;nc|ENSG00000125351|Q9BZI7-2|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.30963134765625	2	510.310418	1018.60628	-1.1441	-0.00058383	0.38356	0.00019573	-0.76051	-0.0003881	510.3103388589466	75.601	1.722	75.601	74.875	76.597	0					88	44	4	0	0	0	0.53979	1	9284	9284		56.721	1.9447	1	4412800			81474	4097	56789	56883	90492	90492					0.09772388142528143
TTPPLTLL	8	Unmodified	_TTPPLTLL_					0	0	0			REV__ENST00000554467.5_1_12:57625133-57626138:+|nuORF	REV__ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2621765136719	2	428.262936	854.51132	0.10911	4.6729E-05	-2.7902	-0.0011949	-2.6811	-0.0011482	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.0572	1	11331	11331		28.254	0	1	88816000	+		81475	34988	56790	56884	90493	90493					0.0782445467133357
TTPQAWLL	8	Unmodified	_TTPQAWLL_					0	0	0			REV__ENST00000393966.1_1_16:67315041-67322708:+|nuORF	REV__ENST00000393966.1_1_16:67315041-67322708:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2586669921875	2	465.258185	928.501818	0.89202	0.00041502	-1.4627	-0.00068052	-0.57065	-0.0002655	465.25703480930673	63.63	1.3182	63.63	63.336	64.654	0					64	35	4	0	0	0	0.59392	1	7455	7455		76.847	2.8719	1	3007000	+		81476	31659	56791	56885	90494	90494					0.034706863857991266
TTPQITFLP	9	Unmodified	_TTPQITFLP_					0	0	0		ENST00000455558.2_3_22:26000393-26080524:+|nuORF	ENST00000455558.2_3_22:26000393-26080524:+|nuORF	ENST00000455558.2_3_22:26000393-26080524:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7452392578125	2	509.2844	1016.55425	-1.0309	-0.00052501	-3.6751	-0.0018716	-4.7059	-0.0023967	509.28247853055893	39.139	0.6465	39.162	38.844	39.49	0.023727					36	17	3	0	0	0	0.024263	1	3244	3244		51.335	17.163	1	628680			81477	14582	56792	56886	90495	90495					0.04663224728756177
TTPRASLP	8	Unmodified	_TTPRASLP_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7691650390625	2	421.74016	841.465767	0.43285	0.00018255	0.13501	5.6939E-05	0.56786	0.00023949	421.7398778706149	58.625	0.51551	58.625	58.38	58.895	0					21	13	2	0	0	0	0.027866	1	6659	6659		65.803	10.299	1	351940			81478	2797	56793	56887	90496	90496					0.03869229208953584
TTPTVTPTNV	10	Unmodified	_TTPTVTPTNV_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.7718505859375	2	515.774396	1029.53424	-0.80413	-0.00041475	0.94508	0.00048745	0.14095	7.2699E-05	515.7748295675646	66.716	0.58585	66.746	66.491	67.077	0.030106					33	13	3	0	0	0	0.86389	1	7851	7851		56.434	6.8977	1	2407100	+		81479	21134	56794	56888	90497	90497					0.02065428998139396
TTPVQTVTI	9	Unmodified	_TTPVQTVTI_					0	0	0		ENSG00000141568|ENST00000335255|FOXK2;nc|ENSG00000141568|Q01167-2|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2736511230469	2	480.274032	958.533512	0.32668	0.00015689	-0.44039	-0.00021151	-0.11371	-5.4614E-05	480.2738193953115	75.842	1.4626	75.667	75.389	76.852	-0.17548					97	35	4	0	0	0	0.15029	1	8982	8982		99.375	0.74558	1	3823800			81480	5504	56795	56889	90498	90498					0.052586343491157095
TTPVSAPPPQS	11	Unmodified	_TTPVSAPPPQS_					0	0	0			REV__nc|ENSG00000137090|Q9Y5R6-2|DMRT1	REV__nc|ENSG00000137090|Q9Y5R6-2|DMRT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2691040039062	2	541.279846	1080.54514	-1.1019	-0.00059645	2.1762	0.0011779	1.0743	0.00058149	541.2808116503379	37.177	0.66399	36.958	36.686	37.35	-0.2195					45	16	4	0	0	0	0.024723	1	3012	3012		32.751	9.708	1	833220	+		81481	23725	56796	56890	90499	90499					0.008088313724329055
TTQKLKENK	9	Unmodified	_TTQKLKENK_					0	0	0			REV__nc|ENSG00000087495|Q96KR7-3|PHACTR3	REV__nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3155517578125	2	545.316763	1088.61897	-0.65894	-0.00035933	0.21599	0.00011778	-0.44296	-0.00024155	545.3167551725024	101.4	1.0525	101.4	101.12	102.17	0					35	23	2	0	0	0	0.82115	1	13011	13011		37.812	0	1	1388500	+		81482	20802	56797	56891	90500	90500					0.07820799534761136
TTQKNLKNS	9	Unmodified	_TTQKNLKNS_					0	0	0		ABCB4|p.S666T|1|0.28|ENSG00000005471|chr7:87426818-87426818|A/T|missense_variant	ABCB4|p.S666T|1|0.28|ENSG00000005471|chr7:87426818-87426818|A/T|missense_variant	ABCB4|p.S666T|1|0.28|ENSG00000005471|chr7:87426818-87426818|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.768310546875	2	517.285463	1032.55637	0.04275	2.2114E-05	-0.60445	-0.00031267	-0.5617	-0.00029056	517.284874926039	39.412	0.44958	39.186	39.022	39.472	-0.2257					18	11	2	0	0	0	0.024428	1	3347	3347		26.063	0.48933	1	151800			81483	4	56798	56892	90501	90501					0.041396534665636864
TTQKNTKKL	9	Unmodified	_TTQKNTKKL_					0	0	0			REV__nc|ENSG00000186960|Q86U37|LINC01551	REV__nc|ENSG00000186960|Q86U37|LINC01551	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2882080078125	2	531.319306	1060.62406	0.22451	0.00011929	3.9455	0.0020963	4.17	0.0022156	531.3215031570521	77.252	0.4826	77.009	76.75	77.233	-0.24232					18	12	2	0	0	0	0.024292	1	9188	9188		32.812	0	1	292660	+		81484	31826	56799	56893	90502	90502					0.0961710339736328
TTQVESPWR	9	Unmodified	_TTQVESPWR_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.L1964Rfs*14|1|0.31|ENSG00000133401|chr5:32089336-32089337|-/TCGT|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2;PDZD2|p.L2696Tfs*58|1|0.49|ENSG00000133401|chr5:32098497-32098498|-/ACAA|frameshift_variant	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.803466796875	2	552.277638	1102.54072	-0.55309	-0.00030546	0.42454	0.00023446	-0.12855	-7.0997E-05	552.2777992346498	57.456	0.71121	57.222	56.952	57.664	-0.23363					43	18	3	0	0	0	0.024319	1	6295	6295		47.657	11.211	1	1103000			81485	4705	56800	56894	90503	90503					-0.0064463305047866015
TTREQDSSL	9	Unmodified	_TTREQDSSL_					0	0	0		ENST00000419802.1_2_2:18060688-18099077:+|nuORF	ENST00000419802.1_2_2:18060688-18099077:+|nuORF	ENST00000419802.1_2_2:18060688-18099077:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7505493164062	2	518.74891	1035.48327	-0.52683	-0.00027329	3.2463	0.001684	2.7195	0.0014107	518.7505367503043	27.201	1.2036	27.188	26.828	28.031	-0.012983					78	31	4	0	0	0	0.59099	1	1462	1462		53.351	2.016	1	3272800			81486	13960	56801	56895	90504	90504					-0.033055200467060786
TTRKAEVIN	9	Unmodified	_TTRKAEVIN_					0	0	0		nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000100031|P19440-2|GGT1;ENSG00000100031|ENST00000400382|GGT1	nc|ENSG00000197421|A6NGU5|GGT3P	nc|ENSG00000197421|A6NGU5|GGT3P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7740478515625	2	516.29583	1030.57711	0.22566	0.00011651	-0.76317	-0.00039402	-0.5375	-0.00027751	516.2970274174705	68.691	0.64609	68.461	68.156	68.802	-0.23048					24	15	2	0	0	0	0.024257	1	7975	7975		41.427	22.323	1	165360			81487	18635	56802	56896	90505	90505					0.06304243846238933
TTRKAEVIN	9	Unmodified	_TTRKAEVIN_					0	0	0		nc|ENSG00000197421|A6NGU5|GGT3P;nc|ENSG00000100031|P19440-2|GGT1;ENSG00000100031|ENST00000400382|GGT1	nc|ENSG00000197421|A6NGU5|GGT3P	nc|ENSG00000197421|A6NGU5|GGT3P	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.29583	1030.57711	0.40193	0.00020751	4.2648	0.0022019	4.6667	0.0024094	516.2971073873955	68.782	0.40007	68.539	68.266	68.666	-0.24278	0.039407	0.0021196	NaN	41.427	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182380			81488	18635	56802	56896							0.06304243846238933
TTRPALQEL	9	Unmodified	_TTRPALQEL_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|26|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|26|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|26|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.7901611328125	2	514.790381	1027.56621	0.24388	0.00012555	-0.82111	-0.0004227	-0.57722	-0.00029715	514.789799882895	61.791	0.85845	61.564	61.261	62.119	-0.22663					52	22	3	0	0	0	0.094442	1	7121	7121		112.41	2.9326	1	15971000			81489	17878	56803	56897	90506	90506					0.05352841471949432
TTRPALQEL	9	Unmodified	_TTRPALQEL_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|26|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|26|1|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|26|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7902221679688	2	514.790381	1027.56621	-0.45899	-0.00023628	-0.0082585	-4.2514E-06	-0.46725	-0.00024054	514.790130969628	61.458	0.85637	61.53	61.239	62.096	0.071125					52	22	3	0	0	0	0.10464	1	7041	7041		109.48	5.4647	1	17971000			81490	17878	56803	56897	90507	90507					0.05352841471949432
TTRSATKS	8	Unmodified	_TTRSATKS_					0	0	0			REV__ENST00000389221.8_2_16:1435340-1440667:-|nuORF	REV__ENST00000389221.8_2_16:1435340-1440667:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.2462158203125	2	426.232699	850.450845	0.22825	9.7286E-05	-1.4641	-0.00062404	-1.2358	-0.00052675	426.23250923961604	87.13	0.41597	86.952	86.822	87.238	-0.17875					12	9	2	0	0	0	0.027866	1	10612	10612		24.203	0	1	96429	+		81491	31567	56804	56898	90508	90508					0.019637373409523207
TTRVLLQGN	9	Unmodified	_TTRVLLQGN_					0	0	0		nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.30706787109375	2	501.290548	1000.56654	0.71184	0.00035684	-1.0172	-0.00050993	-0.30541	-0.0001531	501.2899628674141	96.802	1.0716	96.665	95.853	96.924	-0.13671					37	24	2	0	0	0	0.024539	1	11930	11930		14.865	0.20078	1	168280			81492	1418	56805	56899	90509	90509					0.06628261191815454
TTRVNVSSSK	10	Unmodified	_TTRVNVSSSK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.76416015625	2	539.796195	1077.57784	-0.27234	-0.00014701	3.098	0.0016723	2.8256	0.0015253	539.7976948562933	50.174	0.41247	49.895	49.657	50.07	-0.27977					19	10	2	0	0	0	0.03519	1	5085	5085		20.03	0	1	532450			81493	6479	56806	56900	90510	90510					0.04215038495271983
TTRYFDVL	8	Unmodified	_TTRYFDVL_					0	0	0			REV__ENSG00000154016|ENST00000284154|GRAP	REV__ENSG00000154016|ENST00000284154|GRAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.78826904296875	2	507.766374	1013.5182	0.27832	0.00014132	0.61914	0.00031438	0.89745	0.0004557	507.76644094732023	71.633	1.2119	71.644	71.239	72.451	0.010735					68	31	3	0	0	0	0.027866	1	8670	8670		71.296	7.0884	1	654430	+		81494	24926	56807	56901	90511	90511					0.01197767551900597
TTSGLSSPQP	10	Unmodified	_TTSGLSSPQP_					0	0	0			REV__nc|ENSG00000168453|O43593-2|HR	REV__nc|ENSG00000168453|O43593-2|HR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.798095703125	2	487.743096	973.47164	-0.28732	-0.00014014	4.1863	0.0020418	3.8989	0.0019017	487.7443606403723	50.113	0.22063	50.194	50.022	50.243	0.08099					9	6	2	0	0	0	0.03519	1	5132	5132		42.864	19.822	1	194970	+		81495	26261	56808	56902	90512	90512					-0.016157170700353163
TTSKTDQRW	9	Unmodified	_TTSKTDQRW_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.7802124023438	2	561.780544	1121.54654	0.18144	0.00010193	-0.38674	-0.00021726	-0.20529	-0.00011533	561.7802447021668	23.235	0.78983	23.034	22.733	23.523	-0.20193					40	17	4	0	0	0	0.1158	2	908	896;908		107.01	44.9	1	498930			81496	958	56809	56903	90513;90514	90514					-0.009375345387979905
TTSKTDQRW	9	Unmodified	_TTSKTDQRW_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	561.780544	1121.54654	-0.33926	-0.00019059	0.34605	0.0001944	0.0067864	3.8124E-06	561.7806163725027	23.377	0.63404	23.197	22.929	23.563	-0.17989	0.086585	0.00059015	NaN	107.01	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713150			81497	958	56809	56903							-0.009375345387979905
TTSKTDQRW	9	Unmodified	_TTSKTDQRW_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	561.780544	1121.54654	1.4224	0.00079907	-1.5219	-0.00085499	-0.099531	-5.5914E-05	561.7793750162942	23.293	0.51723	23.101	22.804	23.321	-0.19117	-0.0093139	-0.0015086	NaN	107.01	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139470			81498	958	56809	56903							-0.009375345387979905
TTSLVMPITN	10	Unmodified	_TTSLVMPITN_					0	0	0		ENST00000443967.5_1_5:175717144-175717486:+|nuORF	ENST00000443967.5_1_5:175717144-175717486:+|nuORF	ENST00000443967.5_1_5:175717144-175717486:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2800903320312	2	538.78645	1075.55835	-0.72098	-0.00038846	-3.6433	-0.001963	-4.3643	-0.0023514	538.7841023751195	103.99	0.37812	103.86	103.7	104.08	-0.12927					18	9	3	0	0	0	1.1329	1	12951	12951		27.882	1.1893	1	64355			81499	14411	56810	56904	90515	90515					0.023589461601659423
TTSRVLKVL	9	Unmodified	_TTSRVLKVL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8264465332031	2	508.826766	1015.63898	-0.58341	-0.00029686	-0.05035	-2.5619E-05	-0.63376	-0.00032247	508.8266059696006	40.439	1.3901	40.29	40.004	41.394	-0.1497					92	36	4	0	0	0	0.15366	4	3497	3487;3497;3509;3522		98.629	36.522	1	5830300			81500	7775;8411	56811	56905	90516;90517;90518;90519	90517					0.13178595265389959
TTSRVLKVL	9	Unmodified	_TTSRVLKVL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.8265686035156	2	508.826766	1015.63898	-0.33486	-0.00017039	-0.50037	-0.0002546	-0.83523	-0.00042499	508.8263918018568	40.612	1.3987	40.387	40.078	41.476	-0.225					90	36	4	0	0	0	0.10174	4	3514	3503;3514;3526;3541		110.12	43.691	1	5421000			81501	7775;8411	56811	56905	90520;90521;90522;90523	90521					0.13178595265389959
TTSRVLKVL	9	Unmodified	_TTSRVLKVL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP;JUP-LEPREL4|3|fusion;JUP-LEPREL4|2|fusion;JUP-LEPREL4|1|fusion	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.8265380859375	2	508.826766	1015.63898	-1.4364	-0.00073086	0.73905	0.00037605	-0.69731	-0.00035481	508.82701120713193	40.626	1.3111	40.396	40.083	41.394	-0.2303					95	34	4	0	0	0	0.2101	5	3497	3497;3507;3519;3531;3544		87.696	32.92	1	5256900			81502	7775;8411	56811	56905	90524;90525;90526;90527;90528	90524					0.13178595265389959
TTTAPTTVMLY	11	Unmodified	_TTTAPTTVMLY_					0	0	0			REV__SLITRK6|p.K642Efs*5|1|0.09|ENSG00000184564|chr13:85794586-85794587|-/T|frameshift_variant	REV__SLITRK6|p.K642Efs*5|1|0.09|ENSG00000184564|chr13:85794586-85794587|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.8050537109375	2	599.804839	1197.59513	-0.14686	-8.8085E-05	0.32511	0.000195	0.17825	0.00010692	599.8048310105912	68.168	0.84285	67.934	67.636	68.479	-0.23375					52	20	4	0	0	0	0.30495	1	7876	7876		93.195	23.568	1	3348200	+		81503	27682	56812	56906	90529	90529					0.004231979860833235
TTTEKAQGWGR	11	Unmodified	_TTTEKAQGWGR_					0	0	0		ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.9000549316406	3	412.210676	1233.6102	-0.29	-0.00011954	0.47122	0.00019424	0.18122	7.4702E-05	412.21093303155953	28.196	0.84653	28.044	27.808	28.655	-0.15195					40	20	4	0	0	0	0.024737	1	1678	1678		27.554	11.024	1	280490			81504	13445	56813	56907	90530	90530					0.0027382589828448545
TTTEKLLKIF	10	Unmodified	_TTTEKLLKIF_					0	0	0			REV__NAALAD2|p.P33L|1|0.08|ENSG00000077616|chr11:90135574-90135574|C/T|missense_variant	REV__NAALAD2|p.P33L|1|0.08|ENSG00000077616|chr11:90135574-90135574|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.3621826171875	2	597.360639	1192.70673	0.52306	0.00031246	-3.5336	-0.0021108	-3.0105	-0.0017984	597.3583988905528	98.674	1.502	98.55	98.069	99.571	-0.12413					106	37	4	0	0	0	1.1307	1	12361	12361		26.693	2.4902	1	2779900	+		81505	36417	56814	56908	90531	90531					0.11808000405494568
TTTFLPEDF	9	Unmodified	_TTTFLPEDF_					0	0	0		ENSG00000158470|ENST00000371711|B4GALT5	ENSG00000158470|ENST00000371711|B4GALT5	ENSG00000158470|ENST00000371711|B4GALT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2974853515625	2	535.755672	1069.49679	-0.93472	-0.00050078	1.3686	0.00073324	0.43389	0.00023246	536.2593075758825	57.487	0.49391	57.31	57.06	57.554	-0.17775					26	12	3	0	0	0	0.024506	1	6259	6259		23.042	0	1	297490			81506	6673	56815	56909	90532	90532					-0.03517662267472588
TTTFLPEDF	9	Unmodified	_TTTFLPEDF_					0	0	0		ENSG00000158470|ENST00000371711|B4GALT5	ENSG00000158470|ENST00000371711|B4GALT5	ENSG00000158470|ENST00000371711|B4GALT5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.755672	1069.49679	-1.1716	-0.0006277	1.4399	0.00077142	0.26826	0.00014372	535.7541675874265	57.589	0.42339	57.356	57.2	57.624	-0.23363	0.04349	0.00059883	NaN	16.473	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331220			81507	6673	56815	56909							-0.03517662267472588
TTTIAVEVK	9	Unmodified	_TTTIAVEVK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.2822570800781	2	481.281857	960.549162	0.35786	0.00017223	-0.47549	-0.00022884	-0.11762	-5.661E-05	481.2815012913809	46.325	0.87405	46.325	46.056	46.93	0					66	23	4	0	0	0	0.32811	1	4565	4565		71.877	11.759	1	4058200			81508	3480	56816	56910	90533	90533					0.06730920866152701
TTTITAATATI	11	Unmodified	_TTTITAATATI_					0	0	0			REV__ENSG00000126016|ENST00000371959|AMOT	REV__ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7958984375	2	532.795329	1063.5761	-1.448	-0.0007715	2.2573	0.0012027	0.80925	0.00043116	532.796446057668	35.578	1.0327	35.556	35.196	36.229	-0.021763					65	27	4	0	0	0	0.96599	1	2722	2722		44.377	2.9506	1	2942600	+		81509	22877	56817	56911	90534	90534					0.04685984686670963
TTTKWTKAADK	11	Unmodified	_TTTKWTKAADK_					0	0	0			REV__ENST00000415560.1_1_X:26766244-26766466:+|nuORF	REV__ENST00000415560.1_1_X:26766244-26766466:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.206787109375	3	417.562827	1249.66665	-0.62685	-0.00026175	1.8909	0.00078957	1.2641	0.00052782	417.5634596771578	27.057	0.53413	26.814	26.335	26.869	-0.24217					24	12	3	0	0	0	0.024723	1	1400	1400		31.068	11.038	1	173090	+		81510	32058	56818	56912	90535	90535					0.05180453734942603
TTTKWTKAADK	11	Unmodified	_TTTKWTKAADK_					0	0	0			REV__ENST00000415560.1_1_X:26766244-26766466:+|nuORF	REV__ENST00000415560.1_1_X:26766244-26766466:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	417.562827	1249.66665	-0.29847	-0.00012463	2.2069	0.0009215	1.9084	0.00079687	417.5636082448045	26.909	0.34671	26.741	26.462	26.809	-0.16816	-0.035988	0.00019474	NaN	31.068	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159760	+		81511	32058	56818	56912							0.05180453734942603
TTTKWTKAADK	11	Unmodified	_TTTKWTKAADK_					0	0	0			REV__ENST00000415560.1_1_X:26766244-26766466:+|nuORF	REV__ENST00000415560.1_1_X:26766244-26766466:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	417.562827	1249.66665	-0.29421	-0.00012285	2.0117	0.00083999	1.7174	0.00071714	417.56336164567455	26.932	0.42241	26.776	26.464	26.887	-0.15664	-0.0014106	-4.9789E-05	NaN	31.068	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183710	+		81512	32058	56818	56912							0.05180453734942603
TTTKYRLI	8	Unmodified	_TTTKYRLI_					0	0	0		nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-2|SKIL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2973937988281	2	498.297842	994.581131	-0.31179	-0.00015536	0.15293	7.6204E-05	-0.15886	-7.916E-05	498.2977287074927	61.844	0.97241	61.844	61.144	62.117	0					83	25	6	0	0	0	0.77775	1	7157	7157		60.972	0.56831	1	3636200			81513	18304	56819	56913	90536	90536					0.0836233333996006
TTTMPKALAN	10	Unmodified	_TTTMPKALAN_					0	0	0		ENSG00000187747|ENST00000345043|OR52B6	ENSG00000187747|ENST00000345043|OR52B6	ENSG00000187747|ENST00000345043|OR52B6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2518920898438	2	524.278792	1046.54303	-0.091568	-4.8007E-05	-4.4646	-0.0023407	-4.5562	-0.0023887	524.2762035792134	53.941	0.2796	53.696	53.525	53.804	-0.2453					13	8	2	0	0	0	0.03519	1	5663	5663		75.043	30.666	1	315810			81514	9656	56820	56914	90537	90537					0.021620793629836044
TTTPKACLQV	10	Unmodified	_TTTPKACLQV_					0	0	0			REV__ENST00000497251.1_1_1:36605278-36614725:-|nuORF	REV__ENST00000497251.1_1_1:36605278-36614725:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.8110961914062	2	531.286617	1060.55868	-1.0489	-0.00055727	-2.271	-0.0012066	-3.3199	-0.0017638	531.2850852451551	68.975	0.66028	68.714	68.382	69.043	-0.26166					36	15	3	0	0	0	0.03519	1	7953	7953		29.17	13.528	1	382310	+		81515	33849	56821	56915	90538	90538					0.03082365880004545
TTTRSNGLSF	10	Unmodified	_TTTRSNGLSF_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.7871704101562	2	542.275095	1082.53564	0.23427	0.00012704	-4.2886	-0.0023256	-4.0543	-0.0021986	542.7743697192502	51.256	0.62022	51.076	50.87	51.491	-0.18071					21	15	2	0	0	0	0.03519	1	5311	5311		45.972	0.020292	1	158310	+		81516	22725	56822	56916	90539	90539					-0.0023293691308481357
TTTRSNGLSF	10	Unmodified	_TTTRSNGLSF_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.275095	1082.53564	0.49758	0.00026982	-3.9883	-0.0021627	-3.4907	-0.0018929	542.2726460557064	51.125	0.57828	51.013	50.823	51.401	-0.11163	-0.093294	-0.00025308	NaN	37.812	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178920	+		81517	22725	56822	56916							-0.0023293691308481357
TTTRSNGLSF	10	Unmodified	_TTTRSNGLSF_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.275095	1082.53564	-0.85428	-0.00046325	-1.1087	-0.0006012	-1.9629	-0.0010645	542.2733344434158	51.507	0.50154	51.23	50.929	51.431	-0.27643	0.12387	0.00287	NaN	37.812	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110880	+		81518	22725	56822	56916							-0.0023293691308481357
TTTSRPFV	8	Unmodified	_TTTSRPFV_					0	0	0			REV__nc|ENSG00000205277|Q9UKN1|MUC12	REV__nc|ENSG00000205277|Q9UKN1|MUC12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7457580566406	2	454.745442	907.476331	0.92472	0.00042051	-1.1025	-0.00050137	-0.17781	-8.086E-05	454.74470574641884	98.068	1.428	97.932	97.469	98.897	-0.13625					53	33	2	0	0	0	1.0574	1	12118	12118		26.796	6.3143	1	155900	+		81519	28668	56823	56917	90540	90540					0.018892118633857535
TTTSVYLLF	9	Unmodified	_TTTSVYLLF_					0	0	0		ENSG00000174885|ENST00000534750|NLRP6;nc|ENSG00000174885|P59044|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	ENSG00000174885|ENST00000534750|NLRP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7535400390625	2	522.784233	1043.55391	-0.2116	-0.00011062	-1.3948	-0.00072916	-1.6064	-0.00083978	523.2853361317536	31.869	0.45108	31.632	31.373	31.824	-0.23667					15	10	2	0	0	0	0.024541	1	2119	2119		17.365	0	1	67917			81520	8505	56824	56918	90541	90541					0.03387805008901523
TTTTARPTP	9	Unmodified	_TTTTARPTP_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2520751953125	2	473.253631	944.49271	0.0064711	3.0625E-06	-0.10796	-5.1094E-05	-0.10149	-4.8031E-05	473.2535066556965	30.552	1.0493	30.56	30.247	31.296	0.0086708					64	24	4	0	0	0	0.50848	1	1941	1941		58.782	4.0056	1	3703500			81521	1465	56825	56919	90542	90542					0.018242930294718462
TTTTARPTP	9	Unmodified	_TTTTARPTP_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.2530822753906	2	473.253631	944.49271	-0.47873	-0.00022656	0.3415	0.00016162	-0.13723	-6.4946E-05	473.25372115673474	30.216	1.042	30.29	30.045	31.087	0.074314					54	24	3	0	0	0	0.16468	1	1866	1866		96.19	5.8206	1	3721600			81522	1465	56825	56919	90543	90543					0.018242930294718462
TTTVPHMLV	9	Unmodified	_TTTVPHMLV_					0	0	0		ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	ENSG00000204703|ENST00000377173|OR2B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.770751953125	2	499.770603	997.526652	-0.019671	-9.8308E-06	0.42752	0.00021366	0.40785	0.00020383	499.77068014153656	65.305	1.2762	65.343	64.928	66.205	0.037376					89	34	4	0	0	0	0.52323	1	7667	7667		57.811	7.7867	1	13501000			81523	10371	56826	56920	90544	90544					0.027789981968794564
TTVDLYYLEP	10	Unmodified	_TTVDLYYLEP_					0	0	0		ENST00000507780.1_1_4:81256922-81257812:+|nuORF	ENST00000507780.1_1_4:81256922-81257812:+|nuORF	ENST00000507780.1_1_4:81256922-81257812:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.214599609375	3	405.204417	1212.59142	0.07043	2.8539E-05	-4.0696	-0.001649	-3.9992	-0.0016205	405.2025835050228	28.153	1.0841	28.149	27.581	28.665	-0.0042019					51	26	3	0	0	0	0.03519	1	1660	1660		31.634	0	1	191890			81524	15769	56827	56921	90545	90545					-0.00637148516148045
TTVDRVHLI	9	Unmodified	_TTVDRVHLI_					0	0	0			REV__ENSG00000165434|ENST00000298198|PGM2L1	REV__ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	527.3053588867188	2	527.306198	1052.59784	-0.70856	-0.00037363	-1.751	-0.00092329	-2.4595	-0.0012969	527.3053897775626	97.897	0.98776	97.897	97.37	98.358	0					62	22	4	0	0	0	0.85329	1	12502	12502		35.618	2.8059	1	615700	+		81525	25885	56828	56922	90546	90546					0.07364834225904815
TTVGGHMMY	9	Unmodified	_TTVGGHMMY_					0	0	0		ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	ENSG00000112658|ENST00000265354|SRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7716979980469	2	498.717513	995.420473	-0.40162	-0.00020029	-1.5814	-0.00078868	-1.983	-0.00098897	498.71643804950463	31.187	0.34315	31.002	30.865	31.208	-0.18503					13	8	2	0	0	0	0.024517	1	2034	2034		19.36	0	1	232280			81526	3228	56829	56923	90547	90547					-0.07742080640105087
TTVGTGPLTV	10	Unmodified	_TTVGTGPLTV_					0	0	0			REV__nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8	REV__nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7869567871094	2	473.266207	944.517862	-0.057081	-2.7014E-05	0.052337	2.477E-05	-0.0047431	-2.2448E-06	473.2661277206445	83.831	0.78007	83.831	83.52	84.3	0					29	17	2	0	0	0	0.03519	1	10461	10461		49.442	8.6634	1	269690	+		81527	21517	56830	56924	90548	90548					0.043383478320379254
TTVIIILGCV	10	Unmodified	_TTVIIILGCV_					0	0	0			REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.31396484375	2	516.312103	1030.60965	0.29486	0.00015224	2.9401	0.001518	3.2349	0.0016702	516.3135620168821	97.895	2.6352	97.906	97.149	99.785	0.010239					201	60	6	0	0	0	1.0665	3	12429	12429;12441;12465		37.159	1.4512	1	30092000	+		81528	30637	56831	56925	90549;90550;90551	90549					0.09557314924882121
TTVIIILGCV	10	Unmodified	_TTVIIILGCV_					0	0	0			REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.3141479492188	2	516.312103	1030.60965	0.62813	0.00032431	2.0739	0.0010708	2.702	0.0013951	516.3130364630896	98.045	3.1296	97.909	96.658	99.787	-0.13625					219	74	6	0	0	0	1.0665	2	12131	12131;12140		37.159	1.4512	1	32395000	+		81529	30637	56831	56925	90552;90553	90552					0.09557314924882121
TTVIIILGCV	10	Unmodified	_TTVIIILGCV_					0	0	0			REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.3136596679688	2	516.312103	1030.60965	1.2467	0.00064367	1.4376	0.00074224	2.6842	0.0013859	516.3127200758097	98.004	2.6622	97.879	97.018	99.68	-0.12414					214	65	6	0	0	0	1.0142	2	12133	12133;12166		44.117	1.4512	1	30440000	+		81530	30637	56831	56925	90554;90555	90554					0.09557314924882121
TTVIIILGCV	10	Unmodified	_TTVIIILGCV_					0	0	0			REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	REV__ENST00000341567.8_1_7:66420943-66421105:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3136596679688	2	516.312103	1030.60965	-0.060536	-3.1256E-05	2.6638	0.0013753	2.6033	0.0013441	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	1.1056	1	12124	12124		31.955	1.4512	1	29455000	+		81531	30637	56831	56925	90556	90556					0.09557314924882121
TTVIPVAQP	9	Unmodified	_TTVIPVAQP_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.25909423828125	2	463.271293	924.528032	-0.32607	-0.00015106	-1.9047	-0.00088241	-2.2308	-0.0010335	463.27024143850855	21.658	0.57075	21.568	21.304	21.875	-0.090092					19	11	2	0	0	0	0.024436	1	652	652		30.504	8.5438	1	213160			81532	2431	56832	56926	90557	90557					0.06274955557273643
TTVIVTAF	8	Unmodified	_TTVIVTAF_					0	0	0		ST3GAL6|p.L186V|1|0.3|ENSG00000064225|chr3:98788160-98788160|C/G|missense_variant	ST3GAL6|p.L186V|1|0.3|ENSG00000064225|chr3:98788160-98788160|C/G|missense_variant	ST3GAL6|p.L186V|1|0.3|ENSG00000064225|chr3:98788160-98788160|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2457275390625	2	426.247286	850.48002	0.91762	0.00039113	-3.8716	-0.0016503	-2.954	-0.0012591	426.245560884628	84.243	1.1103	84.084	83.628	84.738	-0.15869					58	25	3	0	0	0	1.0572	1	10176	10176		28.254	1.4582	1	819460			81533	37972	56833	56927	90558	90558					0.04879881637236849
TTVKTSYL	8	Unmodified	_TTVKTSYL_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.755475	911.496398	-0.16103	-7.3553E-05	-2.5497	-0.0011646	-2.7107	-0.0012381	456.75420670625556	22.793	0.78004	22.718	22.317	23.097	-0.075296					47	16	4	0	0	0	0.027866	1	865	865		71.378	21.353	1	995320	+		81534	20688	56834	56928	90559	90559					0.037109628033249464
TTVKTSYL	8	Unmodified	_TTVKTSYL_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	456.755475	911.496398	0.4045	0.00018476	4.4571	0.0020358	4.8616	0.0022206	456.757371315262	23.005	0.69977	22.803	22.453	23.153	-0.20193	0.05348	0.0044161	NaN	71.378	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	803460	+		81535	20688	56834	56928							0.037109628033249464
TTVKTSYL	8	Unmodified	_TTVKTSYL_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	456.755475	911.496398	-0.46019	-0.00021019	5.5215	0.002522	5.0613	0.0023118	456.7578111732551	23.085	0.67529	22.9	22.6	23.275	-0.18539	0.15037	0.0053884	NaN	71.378	47	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1309400	+		81536	20688	56834	56928							0.037109628033249464
TTVKTSYL	8	Unmodified	_TTVKTSYL_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.755475	911.496398	1.0007	0.00045706	-6.6663	-0.0030449	-5.6657	-0.0025878	456.7523799473748	22.913	0.37154	22.722	22.386	22.758	-0.19117	-0.027435	-0.0057453	NaN	71.378	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66204	+		81537	20688	56834	56928							0.037109628033249464
TTVLFFLL	8	Unmodified	_TTVLFFLL_					0	0	0			REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.3055114746094	2	477.288954	952.563355	0.56355	0.00026898	-3.092	-0.0014758	-2.5284	-0.0012068	477.2875823999153	91.554	0.60034	91.565	91.318	91.919	0.010712					19	13	2	0	0	0	0.027866	1	11510	11510		33.516	14.156	1	51999	+		81538	21507	56835	56929	90560	90560					0.08517618085090817
TTVLVELT	8	Unmodified	_TTVLVELT_					0	0	0		nc|ENSG00000020256|Q9NTW7|ZFP64;ZFP64|p.D29Y|1|0.2|ENSG00000020256|chr20:52187033-52187033|C/A|missense_variant;nc|ENSG00000020256|Q9NTW7-3|ZFP64;nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64;nc|ENSG00000020256|Q9NTW7-6|ZFP64	nc|ENSG00000020256|Q9NTW7|ZFP64	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.5216369628906	2	438.257851	874.501149	0.1533	6.7184E-05	1.5307	0.00067084	1.684	0.00073803	438.2582592684836	32.354	0.57344	32.197	31.991	32.564	-0.15772					21	13	2	0	0	0	0.027866	1	2190	2190		17.365	4.4058	1	177390			81539	18037;955	56836	56930	90561	90561					0.058878469460864835
TTVNKKLKT	9	Unmodified	_TTVNKKLKT_					0	0	0		nc|ENSG00000170234|Q96N64-3|PWWP2A;nc|ENSG00000170234|Q96N64-2|PWWP2A;ENSG00000170234|ENST00000307063|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	nc|ENSG00000170234|Q96N64-3|PWWP2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2737426757812	2	516.824224	1031.63389	0.43076	0.00022263	2.9694	0.0015347	3.4001	0.0017573	516.8255804424458	79.567	1.2525	79.32	78.78	80.032	-0.2465					52	29	2	0	0	0	0.024484	1	9563	9563		30.318	7.2752	1	202900			81540	8015	56837	56931	90562	90562					0.1193429140275839
TTVPNTIVVSW	11	Unmodified	_TTVPNTIVVSW_					0	0	0		nc|ENSG00000033800|O75925-3|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.8324584960938	2	608.832246	1215.64994	-0.63962	-0.00038942	0.19692	0.00011989	-0.44271	-0.00026953	608.8325201854615	81.646	0.88437	81.417	81.064	81.948	-0.2289					70	20	6	0	0	0	0.27721	3	9806	9796;9806;9818		91.265	18.386	1	2848400			81541	1025	56838	56932	90563;90564;90565	90564					0.05073952848988483
TTVPNTIVVSW	11	Unmodified	_TTVPNTIVVSW_					0	0	0		nc|ENSG00000033800|O75925-3|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.83203125	2	608.832246	1215.64994	-0.10076	-6.1344E-05	-0.77892	-0.00047423	-0.87967	-0.00053557	608.8317039697384	81.633	1.0574	81.439	81.131	82.188	-0.19334					70	24	4	0	0	0	0.026238	3	9826	9814;9826;9839		128.6	52.432	1	2596600			81542	1025	56838	56932	90566;90567;90568	90567					0.05073952848988483
TTVPNTIVVSW	11	Unmodified	_TTVPNTIVVSW_					0	0	0		nc|ENSG00000033800|O75925-3|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-2|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	nc|ENSG00000033800|O75925-3|PIAS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.8321533203125	2	608.832246	1215.64994	-0.82825	-0.00050426	0.19223	0.00011704	-0.63601	-0.00038723	608.8324720280383	81.586	0.75992	81.444	81.151	81.911	-0.14249					63	17	5	0	0	0	0.17999	4	9799	9790;9799;9812;9824		101.25	38.204	1	2559700			81543	1025	56838	56932	90569;90570;90571;90572	90570					0.05073952848988483
TTVQGDGVI	9	Unmodified	_TTVQGDGVI_					0	0	0		nc|ENSG00000008130|O95544-3|NADK;ENSG00000008130|ENST00000341426|NADK;nc|ENSG00000008130|O95544-2|NADK	nc|ENSG00000008130|O95544-3|NADK	nc|ENSG00000008130|O95544-3|NADK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	444.2459716796875	2	445.234907	888.455261	-0.41092	-0.00018296	-2.0792	-0.00092573	-2.4901	-0.0011087	445.23401261676645	102.8	1.1678	102.8	102.35	103.51	0					74	27	4	0	0	0	0.024405	1	13183	13183		27.882	0	1	2712000			81544	835	56839	56933	90573	90573					0.00657201763874582
TTVRREMD	8	Unmodified	_TTVRREMD_					0	0	0		ENST00000366672.4_1_1:230417100-230417286:+|nuORF	ENST00000366672.4_1_1:230417100-230417286:+|nuORF	ENST00000366672.4_1_1:230417100-230417286:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.3050537109375	2	504.250566	1006.48658	0.055721	2.8097E-05	-3.6542	-0.0018426	-3.5984	-0.0018145	504.24882811169135	68.512	0.81698	68.219	67.936	68.753	-0.29267					37	20	2	0	0	0	0.027866	1	8178	8178		76.774	14.667	1	572230			81545	12823	56840	56934	90574	90574					-0.01640548473687886
TTVRTVTY	8	Unmodified	_TTVRTVTY_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.7480773925781	2	470.758549	939.502546	-0.94027	-0.00044264	0.82323	0.00038754	-0.11704	-5.5098E-05	470.7588635333636	45.645	0.84363	45.443	45.161	46.005	-0.20226					38	23	2	0	0	0	0.027866	1	4303	4303		27.882	21.147	1	1537100	+		81546	28136	56841	56935	90575	90575					0.03037481034857592
TTVVEGVQL	9	Unmodified	_TTVVEGVQL_					0	0	0			REV__ENST00000549302.1_1_12:101799535-101801423:-|nuORF	REV__ENST00000549302.1_1_12:101799535-101801423:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.787109375	2	473.266207	944.517862	-0.34997	-0.00016563	0.52239	0.00024723	0.17241	8.1598E-05	473.2663644334801	83.794	0.60492	83.704	83.469	84.074	-0.090454					21	13	2	0	0	0	0.024263	1	10419	10419		60.972	0	1	268890	+		81547	22562	56842	56936	90576	90576					0.04338347832049294
TTVYDEHTV	9	Unmodified	_TTVYDEHTV_					0	0	0			REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2637939453125	2	532.748379	1063.4822	-0.59338	-0.00031612	0.9857	0.00052513	0.39233	0.00020901	532.748595840771	30.959	0.32942	30.718	30.585	30.915	-0.24109					13	7	2	0	0	0	0.024294	1	2006	2006		37.159	1.5408	1	103210	+		81548	23350	56843	56937	90577	90577					-0.04699734415612511
TTWLRPTVE	9	Unmodified	_TTWLRPTVE_					0	0	0			REV__ENSG00000130377|ENST00000588485|ACSBG2	REV__ENSG00000130377|ENST00000588485|ACSBG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.281005859375	2	551.798206	1101.58186	-0.31074	-0.00017146	1.5805	0.0008721	1.2697	0.00070064	551.798032587846	62.34	0.39289	62.127	61.852	62.244	-0.21375					21	9	3	0	0	0	0.024477	1	6972	6972		20.947	8.7401	1	513570	+		81549	23109	56844	56938	90578	90578					0.03513127989003806
TTYAPRRE	8	Unmodified	_TTYAPRRE_					0	0	0		ENST00000393892.7_1_17:40125938-40126070:+|nuORF	ENST00000393892.7_1_17:40125938-40126070:+|nuORF	ENST00000393892.7_1_17:40125938-40126070:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.283447265625	2	497.259248	992.503943	0.59753	0.00029713	-1.6419	-0.00081643	-1.0443	-0.0005193	497.25879969116266	20.844	1.2202	20.648	19.706	20.926	-0.19577					49	24	4	0	0	0	0.027866	1	533	533		42.396	15.703	1	205370			81550	13474	56845	56939	90579	90579					0.007391151236220139
TTYEFIESSEG	11	Unmodified	_TTYEFIESSEG_					0	0	0			REV__CACNG1|p.F97Y|1|0.39|ENSG00000108878|chr17:67054056-67054056|T/A|missense_variant	REV__CACNG1|p.F97Y|1|0.39|ENSG00000108878|chr17:67054056-67054056|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.7442321777344	3	421.518952	1261.53503	-0.22262	-9.3838E-05	0.96251	0.00040572	0.73989	0.00031188	421.5195734427186	26.823	1.2966	26.823	26.283	27.58	0					61	32	3	0	0	0	0.024748	1	1508	1508		13.508	0	1	116440	+		81551	19235	56846	56940	90580	90580					-0.08527821143502479
TTYITRAPN	9	Unmodified	_TTYITRAPN_					0	0	0			REV__ENSG00000100348|ENST00000216185|TXN2	REV__ENSG00000100348|ENST00000216185|TXN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7836303710938	2	518.774731	1035.53491	-0.26575	-0.00013786	3.9386	0.0020433	3.6729	0.0019054	518.7760088703117	42.206	0.57827	41.974	41.695	42.273	-0.23186					18	12	2	0	0	0	0.024539	1	3775	3775		27.882	0	1	185400	+		81552	21096	56847	56941	90581	90581					0.018562684378593985
TTYIYVFI	8	Unmodified	_TTYIYVFI_					0	0	0			REV__nc|ENSG00000250366|A0A1B0GTB2|TUNAR	REV__nc|ENSG00000250366|A0A1B0GTB2|TUNAR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.8081970214844	2	510.276044	1018.53753	0.25065	0.0001279	-1.1892	-0.00060682	-0.93855	-0.00047892	510.27530185144445	69.232	0.68633	68.939	68.442	69.129	-0.29291					28	17	2	0	0	0	0.027866	1	8217	8217		44.531	3.7529	1	994920	+		81553	29024	56848	56942	90582	90582					0.029007238428107485
TTYKIVPPKS	10	Unmodified	_TTYKIVPPKS_					0	0	0		nc|ENSG00000082438|Q53SF7-2|COBLL1;ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	nc|ENSG00000082438|Q53SF7-2|COBLL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.26806640625	2	567.331882	1132.64921	-0.61137	-0.00034685	-0.31341	-0.00017781	-0.92478	-0.00052466	567.3313711514312	46.419	0.83921	46.217	45.967	46.806	-0.20226					44	23	3	0	0	0	0.03519	1	4426	4426		16.007	0	1	290530			81554	18094	56849	56943	90583	90583					0.0881915819995811
TTYKKVVFRKY	11	Unmodified	_TTYKKVVFRKY_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.2844543457031	3	478.281883	1431.82382	3.5724	0.0017086	1.5413	0.00073718	5.1137	0.0024458	478.28257693330744	18.249	0.59741	18.006	17.577	18.175	-0.24256					21	11	3	0	0	0	1.0684	1	256	256		20.03	7.073	1	78945			81555	10183	56850	56944	90584	90584					0.12518158345119446
TTYKKVVFRKY	11	Unmodified	_TTYKKVVFRKY_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	478.281883	1431.82382	4.1345	0.0019775	0.84578	0.00040452	4.9803	0.002382	478.2821745819039	17.808	0.2946	17.808	17.598	17.892	0	-0.15739	-0.003093	NaN	20.03	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34920			81556	10183	56850	56944							0.12518158345119446
TTYKKVVFRKY	11	Unmodified	_TTYKKVVFRKY_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	478.281883	1431.82382	0.62782	0.00030028	4.393	0.0021011	5.0208	0.0024014	478.283837270859	18.027	0.34357	17.895	17.663	18.006	-0.13148	-0.069919	0.0019967	NaN	20.03	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26579			81557	10183	56850	56944							0.12518158345119446
TTYKKVVFRKY	11	Unmodified	_TTYKKVVFRKY_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	478.281883	1431.82382	1.3146	0.00062873	3.8433	0.0018382	5.1579	0.0024669	478.283559640594	18.14	0.44207	17.983	17.755	18.197	-0.15637	0.017951	0.001208	NaN	20.03	26	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87432			81558	10183	56850	56944							0.12518158345119446
TTYKKVVFRKY	11	Unmodified	_TTYKKVVFRKY_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	478.281883	1431.82382	-0.016836	-8.0523E-06	5.1394	0.0024581	5.1225	0.00245	478.284224598333	18.208	0.39619	18.004	17.767	18.163	-0.20371	0.038663	0.0030676	NaN	20.03	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76343			81559	10183	56850	56944							0.12518158345119446
TTYTSDVSDSE	11	Unmodified	_TTYTSDVSDSE_					0	0	0		ENST00000559126.5_1_15:85186703-85196938:-|nuORF;ENSG00000177082|ENST00000434634|WDR73;ENST00000559015.5_1_15:85186703-85191289:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF	ENST00000559126.5_1_15:85186703-85196938:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.712890625	2	602.74623	1203.47791	-0.66875	-0.00040308	1.4973	0.00090249	0.82854	0.0004994	602.747068857958	28.414	0.36336	28.263	28.121	28.484	-0.15195					13	8	2	0	0	0	0.024756	1	1660	1660		22.58	0	1	105450			81560	8704	56851	56945	90585	90585					-0.11569288419832446
TVAALLIDF	9	Unmodified	_TVAALLIDF_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.7538757324219	2	481.781493	961.548434	-0.75711	-0.00036476	-3.3781	-0.0016275	-4.1352	-0.0019923	481.7797439914103	20.84	0.48835	20.84	20.609	21.097	0					21	9	3	0	0	0	0.024323	1	561	561		35.618	0	1	142080			81561	1881	56852	56946	90586	90586					0.06612126217089553
TVADDRLLR	9	Unmodified	_TVADDRLLR_					0	0	0		nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-3|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	nc|ENSG00000176871|Q9NYS7-2|WSB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.801513671875	2	529.80128	1057.58801	-0.32685	-0.00017316	-0.073786	-3.9092E-05	-0.40063	-0.00021226	529.8012558868443	40.928	1.0367	40.951	40.527	41.564	0.023006					66	29	3	0	0	0	0.33245	1	3572	3572		71.296	7.0884	1	8055600			81562	8674	56853	56947	90587	90587					0.06151646220496332
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2715148925781	2	485.271824	968.529095	-0.78734	-0.00038208	0.13583	6.5916E-05	-0.65151	-0.00031616	485.27179333535065	32.911	0.96011	32.911	32.494	33.454	0					50	25	3	0	0	0	0.056725	3	2323	2313;2323;2335		126.24	46.53	1	3920600			81563	11045	56854	56948	90588;90589;90590	90589					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2715148925781	2	485.271824	968.529095	-0.69128	-0.00033546	0.10324	5.0102E-05	-0.58803	-0.00028536	485.27178495755624	32.761	1.0532	32.768	32.407	33.461	0.0066261					55	28	3	0	0	0	0.071379	2	2293	2281;2293		120.87	44.094	1	4204100			81564	11045	56854	56948	90591;90592	90592					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2713928222656	2	485.271824	968.529095	-0.33856	-0.0001643	-0.21636	-0.00010499	-0.55492	-0.00026929	485.2715981778038	32.643	1.2709	32.706	32.085	33.356	0.062885					61	33	3	0	0	0	0.03201	3	2231	2221;2231;2243		139.97	57.73	1	3619300			81565	11045	56854	56948	90593;90594;90595	90594					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.2715148925781	2	485.271824	968.529095	-0.14174	-6.8782E-05	-0.40211	-0.00019513	-0.54385	-0.00026391	485.27161087080236	32.918	1.452	32.687	32.221	33.673	-0.23107					87	35	4	0	0	0	0.030064	5	2320	2287;2296;2308;2320;2333		141.52	56.605	1	12545000			81566	11045	56854	56948	90596;90597;90598;90599;90600	90599					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2713623046875	2	485.271824	968.529095	-0.21698	-0.00010529	-0.34295	-0.00016642	-0.55993	-0.00027172	485.2716489211315	32.865	1.4354	32.699	32.237	33.672	-0.16565					90	35	4	0	0	0	0.016542	4	2289	2267;2277;2289;2303		154.12	66.364	1	13344000			81567	11045	56854	56948	90601;90602;90603;90604	90603					0.043571699261860886
TVAENVKTET	10	Unmodified	_TVAENVKTET_					0	0	0		ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENST00000484514.1_1_3:78710132-78763649:-|nuORF	ENSG00000169855|ENST00000464233|ROBO1	ENSG00000169855|ENST00000464233|ROBO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2763061523438	2	546.282586	1090.55062	-0.72394	-0.00039548	1.6003	0.00087421	0.87634	0.00047873	546.2834243587954	29.171	0.84182	29.022	28.743	29.584	-0.14952					29	19	2	0	0	0	0.03519	1	1729	1729		24.519	14.814	1	703530			81568	7980	56855	56949	90605	90605					0.008965101642388618
TVAGAAGKPLG	11	Unmodified	_TVAGAAGKPLG_					0	0	0			REV__ENSG00000130699|ENST00000252996|TAF4	REV__ENSG00000130699|ENST00000252996|TAF4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2740783691406	2	471.274367	940.53418	0.23728	0.00011183	-0.35717	-0.00016832	-0.11989	-5.6499E-05	471.2741146106928	42.31	0.99088	42.178	41.789	42.78	-0.13219					71	28	4	0	0	0	0.81602	1	3851	3851		56.721	1.2168	1	7100100	+		81569	23135	56856	56950	90606	90606					0.0615347378881097
TVAGMVEKP	9	Unmodified	_TVAGMVEKP_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;TEK|p.M1042*|1|0.24|ENSG00000120156|chr9:27220066-27220066|G/-|frameshift_variant;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.29254150390625	2	466.249503	930.484453	0.39077	0.0001822	0.24858	0.0001159	0.63936	0.0002981	466.2493192072478	61.703	0.78873	61.476	60.899	61.687	-0.22663					25	20	2	0	0	0	0.02435	1	7068	7068		34.173	11.13	1	274200			81570	3794	56857	56951	90607	90607					0.016430227884939086
TVAHCISVS	9	Carbamidomethyl (C)	_TVAHC(Carbamidomethyl (C))ISVS_	TVAHC(1)ISVS		TVAHC(74)ISVS		0	1	0		ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1	ENSG00000137802|ENST00000457542|MAPKBP1	ENSG00000137802|ENST00000457542|MAPKBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.2403869628906	2	487.242209	972.469866	-0.37104	-0.00018078	-4.249	-0.0020703	-4.62	-0.0022511	487.24050762496984	47.566	0.65688	47.47	47.161	47.818	-0.096653					69	17	5	0	0	0	0.31247	1	4675	4675		73.975	7.5455	1	3943600			81571	5155	56858	56952	90608	90608	65				-0.017470493596420056
TVAKKQAEV	9	Unmodified	_TVAKKQAEV_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2865905761719	2	487.287474	972.560395	0.13586	6.6205E-05	-1.6334	-0.00079594	-1.4975	-0.00072973	487.2860921936134	41.966	1.0847	41.736	41.508	42.593	-0.2303					84	29	5	0	0	0	0.12914	1	3732	3732		104.06	8.0232	1	7245800			81572	9876	56859	56953	90609	90609					0.07301742960282809
TVALAAKSQV	10	Unmodified	_TVALAAKSQV_					0	0	0			REV__nc|ENSG00000165309|Q5W041-3|ARMC3	REV__nc|ENSG00000165309|Q5W041-3|ARMC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.76873779296875	2	494.295299	986.576045	-0.087883	-4.344E-05	-0.92838	-0.00045889	-1.0163	-0.00050233	494.2946982076244	47.302	0.46174	47.108	46.886	47.348	-0.19387					19	11	2	0	0	0	0.03519	1	4645	4645		25.574	0	1	262350	+		81573	25872	56860	56954	90610	90610					0.08222029477337855
TVALALVPFL	10	Unmodified	_TVALALVPFL_					0	0	0		ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.3259887695312	2	522.328611	1042.64267	-1.0417	-0.00054413	-3.7436	-0.0019554	-4.7854	-0.0024995	522.3266087995906	80.945	0.84029	80.945	80.5	81.341	0					35	20	2	0	0	0	0.91051	1	10080	10080		53.351	0	1	2113700			81574	10438	56861	56955	90611	90611					0.12305265039231017
TVALTNTK	8	Unmodified	_TVALTNTK_					0	0	0			REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF	REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	423.2585144042969	2	424.247818	846.481082	-0.62486	-0.00026509	0.21921	9.2999E-05	-0.40565	-0.00017209	424.2471940691469	27.037	0.51505	27.037	26.7	27.215	0					21	12	3	0	0	0	0.027866	1	1449	1449		34.173	0	1	82523	+		81575	22950	56862	56956	90612	90612					0.05170096006145286
TVALWLRWRRP	11	Unmodified	_TVALWLRWRRP_					0	0	0			REV__ENST00000358933.9_1_16:67906988-67910776:+|nuORF	REV__ENST00000358933.9_1_16:67906988-67910776:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2886962890625	3	485.289484	1452.84662	-0.26208	-0.00012718	-0.66799	-0.00032417	-0.93007	-0.00045135	485.2891443299355	65.285	0.81323	65.034	64.665	65.479	-0.25112					62	19	4	0	0	0	0.98082	1	7435	7435		41.08	11.529	1	1636700	+		81576	30870	56863	56957	90613	90613					0.13831222253247688
TVASGGRELI	10	Unmodified	_TVASGGRELI_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENST00000463516.5_1_7:45009010-45014805:-|nuORF;ENST00000480503.5_1_7:45008844-45011824:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.78460693359375	2	501.782556	1001.55056	-0.3627	-0.00018199	0.93885	0.0004711	0.57615	0.0002891	501.78311422641656	45.207	1.2281	45.207	44.758	45.986	0					95	35	4	0	0	0	0.55353	1	4359	4359		82.241	2.5279	1	7121700			81577	5007	56864	56958	90614	90614					0.04984554954910436
TVASPRPK	8	Unmodified	_TVASPRPK_					0	0	0			REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	REV__nc|ENSG00000213689|Q9NSU2-1|TREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.74041748046875	2	428.255977	854.497401	0.70254	0.00030087	1.3656	0.00058482	2.0681	0.00088569	428.25704610012696	22.446	0.9295	22.258	21.863	22.793	-0.18894					33	19	2	0	0	0	0.027866	1	785	785		34.173	0	1	79441	+		81578	37128	56865	56959	90615	90615					0.0643322196290228
TVASSDLLLD	10	Unmodified	_TVASSDLLLD_					0	0	0			REV__PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant	REV__PLXNB3|p.G455Afs*7|1|0.6|ENSG00000198753|chrX:153769044-153769044|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2700805664062	2	517.274229	1032.53391	-0.10597	-5.4816E-05	1.4115	0.00073012	1.3055	0.0006753	517.2748842337628	25.752	0.57938	25.581	25.288	25.867	-0.17078					26	14	2	0	0	0	0.03519	1	1223	1223		25.574	4.6271	1	439230	+		81579	37387	56866	56960	90616	90616					0.01894009278316844
TVASTIRAPP	10	Unmodified	_TVASTIRAPP_					0	0	0			REV__ENST00000392627.5_1_17:72443273-72443525:+|nuORF	REV__ENST00000392627.5_1_17:72443273-72443525:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.31292724609375	2	506.792924	1011.57129	1.6875	0.0008552	3.0276	0.0015344	4.7151	0.0023896	506.7953616474259	63.884	0.60592	63.93	63.583	64.189	0.045506					21	16	2	0	0	0	0.03519	1	7454	7454		54.776	7.119	1	363210	+		81580	31617	56867	56961	90617	90617					0.06597145334569632
TVATIDNDNS	10	Unmodified	_TVATIDNDNS_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3151245117188	2	525.240918	1048.46728	-0.085043	-4.4668E-05	2.3625	0.0012409	2.2775	0.0011962	525.2428596383551	69.12	0.54005	68.89	68.637	69.177	-0.23048					21	12	3	0	0	0	0.03519	1	8006	8006		35.152	0.97948	1	171600	+		81581	28823	56868	56962	90618	90618					-0.0550122628360441
TVATSQSYVP	10	Unmodified	_TVATSQSYVP_					0	0	0			REV__CAND1|p.L790V|1|0.54|ENSG00000111530|chr12:67306036-67306036|C/G|missense_variant	REV__CAND1|p.L790V|1|0.54|ENSG00000111530|chr12:67306036-67306036|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7766723632812	2	526.766571	1051.51859	-0.24478	-0.00012894	-1.9275	-0.0010154	-2.1723	-0.0011443	526.7654509494411	49.794	0.26443	49.642	49.407	49.671	-0.1512					13	6	3	0	0	0	0.03519	1	5107	5107		20.947	0	1	698800	+		81582	19244	56869	56963	90619	90619					-0.005108575189069597
TVAVPVAVFF	10	Unmodified	_TVAVPVAVFF_					0	0	0			REV__ENST00000492938.1_1_7:111123705-111161503:-|nuORF	REV__ENST00000492938.1_1_7:111123705-111161503:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3055419921875	2	525.305136	1048.59572	-1.2086	-0.00063489	-2.9556	-0.0015526	-4.1642	-0.0021875	525.3034140445097	65.616	0.86275	65.403	65.052	65.915	-0.21327					50	20	4	0	0	0	0.91051	1	7505	7505		53.351	2.1588	1	2169400	+		81583	27708	56870	56964	90620	90620					0.07336405488103992
TVCCELSSLA	10	Unmodified	_TVCCELSSLA_					0	0	0		PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant;ENSG00000154415|ENST00000284601|PPP1R3A	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	PPP1R3A|p.T957Qfs*26|1|0.08|ENSG00000154415|chr7:113878223-113878223|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.2794799804688	2	513.235735	1024.45692	0.63019	0.00032343	-0.29445	-0.00015112	0.33574	0.00017231	513.2354212975043	58.601	0.53177	58.359	58.129	58.661	-0.24166					31	12	4	0	0	0	0.03519	1	6404	6404		34.173	5.023	1	1278400			81584	6409	56871	56965	90621	90621					-0.054332485340296444
TVCLKSLKNIF	11	Unmodified	_TVCLKSLKNIF_					0	0	0		nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;ENST00000489483.5_1_3:48663421-48664602:-|nuORF	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.3711547851562	2	633.367941	1264.72133	0.68614	0.00043458	1.2689	0.00080368	1.955	0.0012383	633.3686922361071	98.61	0.99169	98.486	98.154	99.146	-0.12413					51	23	3	0	0	0	1.0327	1	12261	12261		29.551	1.4693	1	268360			81585	10656	56872	56966	90622	90622					0.09955749282016768
TVCRLYEV	8	Unmodified	_TVCRLYEV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.2901611328125	2	491.754953	981.495352	-0.40115	-0.00019727	-3.2714	-0.0016087	-3.6725	-0.001806	491.7537869137414	50.319	0.80366	50.319	49.805	50.609	0					37	23	3	0	0	0	0.027866	1	5231	5231		30.504	18.297	1	176870			81586	5790	56873	56967	90623	90623					0.0038642516277604955
TVCRLYEV	8	Unmodified	_TVCRLYEV_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.754953	981.495352	-0.3269	-0.00016075	-5.3762	-0.0026437	-5.703	-0.0028045	491.753325432413	50.33	0.78625	50.225	49.783	50.569	-0.10558	-0.051359	-0.0016216	NaN	23.042	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420320			81587	5790	56873	56967							0.0038642516277604955
TVDARWPQ	8	Unmodified	_TVDARWPQ_					0	0	0			REV__ENSG00000127415|ENST00000514224|IDUA	REV__ENSG00000127415|ENST00000514224|IDUA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.764892578125	2	486.748516	971.482479	-0.33515	-0.00016313	2.9939	0.0014573	2.6587	0.0012941	486.74975471536345	19.873	0.23127	19.755	19.686	19.918	-0.11872					6	4	2	0	0	0	0.027866	1	453	453		19.36	1.995	1	17586	+		81588	22929	56874	56968	90624	90624					-0.004402699050956471
TVDAYHNKP	9	Unmodified	_TVDAYHNKP_					0	0	0		nc|ENSG00000152592|Q13316-2|DMP1;ENSG00000152592|ENST00000339673|DMP1	nc|ENSG00000152592|Q13316-2|DMP1	nc|ENSG00000152592|Q13316-2|DMP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.292724609375	2	522.759081	1043.50361	0.53552	0.00027995	-0.91569	-0.00047869	-0.38017	-0.00019874	522.7585919502698	51.457	0.42167	51.346	51.09	51.511	-0.11163					13	10	2	0	0	0	0.024021	1	5315	5315		68.787	14.011	1	202330			81589	6285	56875	56969	90625	90625					-0.016403045962533724
TVDDFKRA	8	Unmodified	_TVDDFKRA_					0	0	0			REV__ENSG00000152402|ENST00000526355|GUCY1A2	REV__ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.2608337402344	2	476.248349	950.482145	-0.96286	-0.00045856	2.0634	0.0009827	1.1006	0.00052414	476.24968287068685	41.096	0.56448	40.866	40.554	41.119	-0.23029					19	14	2	0	0	0	0.027866	1	3539	3539		44.117	24.757	1	103550	+		81590	24835	56876	56970	90626	90626					0.004923103750456903
TVDFAQKTVI	10	Unmodified	_TVDFAQKTVI_					0	0	0			REV__nc|ENSG00000183873|Q14524-5|SCN5A	REV__nc|ENSG00000183873|Q14524-5|SCN5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.3138427734375	2	561.313689	1120.61282	-0.31874	-0.00017891	-1.5918	-0.00089348	-1.9105	-0.0010724	561.3121259548456	70.585	1.2547	70.597	69.871	71.126	0.012421					57	32	3	0	0	0	0.98754	1	8466	8466		47.657	1.6851	1	993450	+		81591	27620	56877	56971	90627	90627					0.05734281303239186
TVDFMSVKTV	10	Unmodified	_TVDFMSVKTV_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.3186645507812	2	563.794275	1125.574	-1.1189	-0.00063085	-1.4815	-0.00083528	-2.6005	-0.0014661	563.7926749154633	86.282	0.43391	86.305	86.116	86.55	0.023666					13	9	2	0	0	0	0.03519	1	10741	10741		33.922	10.399	1	59208			81592	6270	56878	56972	90628	90628					0.0162323267722968
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7570190429688	2	518.758549	1035.50255	0.94108	0.00048819	-0.60483	-0.00031376	0.33625	0.00017443	518.7580420036213	59.828	1.2956	59.631	59.256	60.552	-0.19742					71	32	4	0	0	0	0.033883	2	6632	6621;6632		138.48	67.844	1	3614200			81593	1054	56879	56973	90629;90630	90630					-0.013785189651343899
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.758056640625	2	518.758549	1035.50255	0.71516	0.000371	-0.28154	-0.00014605	0.43363	0.00022495	518.7582176880026	59.715	1.48	59.538	59.117	60.597	-0.1761					75	37	5	0	0	0	0.013308	2	6624	6611;6624		170.31	72.841	1	3898700			81594	1054	56879	56973	90631;90632	90632					-0.013785189651343899
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MSMS	OPSCC_40_ClassI_Rep-3	6	518.7578735351562	2	518.758549	1035.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.864	1	59.615	59.115	60.115	-0.24842								0	0	0	0.024645	1	6620	6620		123.99	58.186	1				81595	1054	56879	56973	90633	90633					-0.013785189651343899
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MSMS	OPSCC_40_ClassI_Rep-3	6	518.7573852539062	2	518.758549	1035.50255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.94	1	59.691	59.191	60.191	-0.24842								0	0	0	0.0081515	1	6632	6632		170.31	74.499	1				81596	1054	56879	56973	90634	90634					-0.013785189651343899
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.758549	1035.50255	0.78606	0.00040778	-4.4462	-0.0023065	-3.6601	-0.0018987	518.7559734043235	59.616	0.47953	59.616	59.333	59.813	0	0.04669	-0.0032993	NaN	170.31	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183400			81597	1054	56879	56973							-0.013785189651343899
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.758549	1035.50255	0.20164	0.0001046	-4.2226	-0.0021905	-4.021	-0.0020859	518.756363313395	59.744	0.5119	59.544	59.318	59.83	-0.20016	-0.025747	-0.0030674	NaN	170.31	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271850			81598	1054	56879	56973							-0.013785189651343899
TVDGVVFHY	9	Unmodified	_TVDGVVFHY_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.G1960Vfs*115|1|0.08|ENSG00000038427|chr5:83538879-83538880|-/AG|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.758549	1035.50255	-0.21911	-0.00011366	-3.733	-0.0019365	-3.9521	-0.0020502	518.7565319215671	59.434	0.62708	59.519	59.206	59.833	0.085682	-0.050311	-0.0025594	NaN	170.31	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337040			81599	1054	56879	56973							-0.013785189651343899
TVDIVQSNL	9	Unmodified	_TVDIVQSNL_					0	0	0			REV__ENST00000439192.1_1_2:74185177-74208279:-|nuORF	REV__ENST00000439192.1_1_2:74185177-74208279:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	494.2803039550781	2	494.769114	987.523675	1.8872	0.00093372	2.5015	0.0012376	4.3886	0.0021714	494.77050268514415	24.632	1.2488	24.451	23.983	25.232	-0.18089					67	28	4	0	0	0	0.024263	1	1110	1110		71.296	19.96	1	423250	+		81600	32504	56880	56974	90635	90635					0.029414463437205995
TVDKFGPSF	9	Unmodified	_TVDKFGPSF_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.7918701171875	2	499.2531	996.491647	-1.0165	-0.00050749	4.3476	0.0021705	3.3311	0.0016631	499.2551482654824	29.439	0.68991	29.194	28.709	29.399	-0.24523					19	15	2	0	0	0	0.024447	1	1826	1826		32.812	0	1	102300	+		81601	27189	56881	56975	90636	90636					-0.006739213394098442
TVDKLIKKT	9	Unmodified	_TVDKLIKKT_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7716064453125	2	523.334424	1044.6543	-0.38059	-0.00019918	3.6106	0.0018896	3.23	0.0016904	523.3361451125634	72.655	0.41989	72.457	72.248	72.667	-0.1981					14	9	2	0	0	0	0.02435	1	8525	8525		42.396	0	1	76561			81602	2238;18576;3669	56882	56976	90637	90637					0.13375462062572296
TVDMMCYNS	9	Unmodified	_TVDMMCYNS_					0	0	0			REV__ENST00000552353.2_1_12:93397587-93397737:+|nuORF	REV__ENST00000552353.2_1_12:93397587-93397737:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2255249023438	2	532.198296	1062.38204	-1.1668	-0.00062098	2.9622	0.0015765	1.7954	0.00095551	532.2001338851569	27.506	0.21398	27.338	27.273	27.487	-0.16816					7	4	2	0	0	0	0.024541	1	1521	1521		20.947	2.6225	1	47153	+		81603	34949	56883	56977	90638	90638					-0.14665754336920145
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.7800903320312	2	590.779679	1179.5448	-0.003027	-1.7883E-06	0.15103	8.9227E-05	0.14801	8.7439E-05	590.7796887449798	84.392	2.1972	84.188	83.734	85.931	-0.20329					125	51	5	0	0	0	0.0027948	7	10183	10163;10171;10183;10195;10208;10220;10234		186.09	109.31	1	6622900			81604	1563	56884	56978	90639;90640;90641;90642;90643;90644;90645	90641					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.779541015625	2	590.779679	1179.5448	-0.097368	-5.7523E-05	-0.056201	-3.3203E-05	-0.15357	-9.0726E-05	590.7795877325035	84.287	1.6454	84.128	83.714	85.359	-0.15869					104	38	4	0	0	0	4.3447E-06	7	10203	10170;10180;10191;10203;10215;10230;10243		234.63	144.26	1	7661200			81605	1563	56884	56978	90646;90647;90648;90649;90650;90651;90652	90649					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.7794189453125	2	590.779679	1179.5448	-0.17103	-0.00010104	0.037127	2.1934E-05	-0.1339	-7.9108E-05	590.7796771259065	84.34	2.4218	84.202	83.758	86.18	-0.13789					146	56	6	0	0	0	1.3026E-05	7	10188	10155;10164;10176;10188;10200;10214;10227		217.64	121.83	1	7440600			81606	1563	56884	56978	90653;90654;90655;90656;90657;90658;90659	90656					-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	590.779679	1179.5448	-1.5982	-0.00094416	1.7057	0.0010077	0.10755	6.3539E-05	590.7805844086242	84.198	0.72032	84.198	83.866	84.587	0	0.052733	0.0018391	NaN	234.63	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235580			81607	1563	56884	56978							-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	590.779679	1179.5448	-1.7762	-0.0010494	1.9367	0.0011442	0.16048	9.4807E-05	590.7805581098853	84.137	0.55931	84.065	83.787	84.346	-0.072769	-0.080731	0.002112	NaN	234.63	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231510			81608	1563	56884	56978							-0.03778588347427103
TVDPASLWEY	10	Unmodified	_TVDPASLWEY_					0	0	0		ENSG00000075618|ENST00000382361|FSCN1;ENST00000473330.1_1_7:5642709-5645102:+|nuORF	ENSG00000075618|ENST00000382361|FSCN1	ENSG00000075618|ENST00000382361|FSCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	590.779679	1179.5448	-0.15463	-9.1351E-05	0.49328	0.00029142	0.33866	0.00020007	590.7795583490596	84.064	0.64525	84.091	83.771	84.416	0.026558	-0.054454	0.00040652	NaN	234.63	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223490			81609	1563	56884	56978							-0.03778588347427103
TVDPYPAAR	9	Unmodified	_TVDPYPAAR_					0	0	0			REV__ENST00000454741.5_1_22:28396868-28397276:+|nuORF	REV__ENST00000454741.5_1_22:28396868-28397276:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7811279296875	2	495.256174	988.497795	-0.51336	-0.00025424	3.612	0.0017889	3.0987	0.0015346	495.25721285849176	28.292	0.45315	28.292	28.037	28.49	0					19	10	3	0	0	0	0.024405	1	1646	1646		14.865	0	1	68915	+		81610	32768	56885	56979	90660	90660					0.0030859689209137287
TVDQVPCDL	9	Unmodified	_TVDQVPCDL_					0	0	0			REV__ENSG00000182310|ENST00000637797|SPACA6	REV__ENSG00000182310|ENST00000637797|SPACA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.287109375	2	495.23405	988.453547	0.071582	3.545E-05	-1.3878	-0.00068728	-1.3162	-0.00065183	495.23352902345766	67.296	0.44159	67.32	67.112	67.554	0.023911					14	10	2	0	0	0	0.023239	1	7937	7937		74.255	2.8771	1	103180	+		81611	27467	56886	56980	90661	90661					-0.04114175316408364
TVEADDMKY	9	Unmodified	_TVEADDMKY_					0	0	0			REV__ENSG00000237038|ENST00000527080|USP17L8;REV__nc|ENSG00000205946|Q6QN14|USP17L6P	REV__nc|ENSG00000205946|Q6QN14|USP17L6P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.2384033203125	2	536.23679	1070.45903	-0.52731	-0.00028276	3.6855	0.0019763	3.1582	0.0016936	536.2385506578499	60.803	1.0878	60.597	60.295	61.382	-0.20599					63	26	4	0	0	0	0.18915	1	6762	6762		90.777	16.802	1	3781600	+		81612	28873;28882	56887	56981	90662	90662					-0.07338496524585025
TVEDMNEME	9	Unmodified	_TVEDMNEME_					0	0	0		ENST00000596710.1_1_19:21934351-21934702:+|nuORF;nc|ENSG00000163249|Q8N7R7-3|CCNYL1;nc|ENSG00000163249|Q8N7R7-2|CCNYL1;ENSG00000163249|ENST00000295414|CCNYL1	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.7662353515625	2	549.209914	1096.40528	-0.26072	-0.00014319	-2.9941	-0.0016444	-3.2548	-0.0017876	549.2081598223209	41.901	1.7619	41.778	40.881	42.643	-0.12299					67	46	2	0	0	0	0.024511	1	3770	3770		40.778	12.896	1	169420			81613	7052	56888	56982	90663	90663					-0.13907037018589108
TVEDMNEME	9	Unmodified	_TVEDMNEME_					0	0	0		ENST00000596710.1_1_19:21934351-21934702:+|nuORF;nc|ENSG00000163249|Q8N7R7-3|CCNYL1;nc|ENSG00000163249|Q8N7R7-2|CCNYL1;ENSG00000163249|ENST00000295414|CCNYL1	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.209914	1096.40528	-0.49123	-0.00026979	-2.4945	-0.00137	-2.9857	-0.0016398	549.2084085007889	42.138	1.6074	41.907	40.923	42.53	-0.23186	0.065509	0.00035903	NaN	23.523	54	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162040			81614	7052	56888	56982							-0.13907037018589108
TVEDMNEME	9	Unmodified	_TVEDMNEME_					0	0	0		ENST00000596710.1_1_19:21934351-21934702:+|nuORF;nc|ENSG00000163249|Q8N7R7-3|CCNYL1;nc|ENSG00000163249|Q8N7R7-2|CCNYL1;ENSG00000163249|ENST00000295414|CCNYL1	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	549.209914	1096.40528	-0.34969	-0.00019205	-3.0101	-0.0016532	-3.3598	-0.0018452	549.2081102778843	42.069	0.93425	41.838	41.472	42.406	-0.23029	-0.0027244	-0.00020728	NaN	23.523	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191580			81615	7052	56888	56982							-0.13907037018589108
TVEEVYVE	8	Unmodified	_TVEEVYVE_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000459739.5_1_10:79553706-79569486:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.8174743652344	2	484.234573	966.454593	-0.24438	-0.00011834	-2.3494	-0.0011377	-2.5938	-0.001256	484.23344346774326	34.214	0.33204	34.007	33.75	34.082	-0.20696					14	8	3	0	0	0	0.027866	1	2503	2503		38.806	3.1879	1	79383			81616	6186	56889	56983	90664	90664					-0.02997637675855458
TVEEVYVE	8	Unmodified	_TVEEVYVE_					0	0	0		ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000459739.5_1_10:79553706-79569486:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF	ENSG00000151208|ENST00000372391|DLG5	ENSG00000151208|ENST00000372391|DLG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	484.8164978027344	2	484.234573	966.454593	-0.73061	-0.00035378	-1.6287	-0.00078866	-2.3593	-0.0011424	484.2335540096904	34.167	0.47284	33.991	33.82	34.293	-0.17557					13	11	2	0	0	0	0.027866	1	2478	2478		42.474	0	1	97758			81617	6186	56889	56983	90665	90665					-0.02997637675855458
TVEGAAPSTTF	11	Unmodified	_TVEGAAPSTTF_					0	0	0		ENST00000493504.1_1_19:59093379-59093973:+|nuORF	ENST00000493504.1_1_19:59093379-59093973:+|nuORF	ENST00000493504.1_1_19:59093379-59093973:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7655639648438	2	540.764029	1079.5135	-0.47149	-0.00025496	1.2262	0.00066307	0.75469	0.00040811	540.7645879283925	49.966	1.8384	49.785	49.383	51.222	-0.18071					122	48	4	0	0	0	0.96599	1	5016	5016		44.377	1.9027	1	11458000			81618	15504	56890	56984	90666	90666					-0.02307161381554579
TVEGVDIV	8	Unmodified	_TVEGVDIV_					0	0	0			REV__ENSG00000154760|ENST00000285013|SLFN13	REV__ENSG00000154760|ENST00000285013|SLFN13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8919677734375	2	416.226551	830.438549	-0.92019	-0.00038301	3.1931	0.001329	2.2729	0.00094604	416.22788680099023	37.969	0.49272	37.747	37.466	37.959	-0.22149					18	13	2	0	0	0	0.027866	1	3103	3103		25.45	3.7478	1	140560	+		81619	24973	56891	56985	90667	90667					0.016547008779070893
TVEHLQLE	8	Unmodified	_TVEHLQLE_					0	0	0		ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF;nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1	ENST00000475971.5_1_7:893033-912965:+|nuORF	ENST00000475971.5_1_7:893033-912965:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7900390625	2	484.756007	967.497461	-0.51747	-0.00025085	0.76711	0.00037186	0.24964	0.00012102	484.75615667952667	45.588	0.61409	45.631	45.409	46.024	0.043877					43	17	4	0	0	0	0.027866	1	4452	4452		19.997	9.7315	1	2253400			81620	7327	56892	56986	90668	90668					0.012411771722327103
TVEKVKPAR	9	Unmodified	_TVEKVKPAR_					0	0	0		ENSG00000100565|ENST00000689127|LRRC74A;nc|ENSG00000100565|Q0VAA2|LRRC74A	ENSG00000100565|ENST00000689127|LRRC74A	ENSG00000100565|ENST00000689127|LRRC74A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7902221679688	2	514.316566	1026.61858	-0.083207	-4.2795E-05	1.0881	0.00055965	1.0049	0.00051685	514.3162597109188	41.506	0.74225	41.506	41.051	41.793	0					51	20	4	0	0	0	0.024367	1	3705	3705		44.377	10.862	1	1072900			81621	2217	56893	56987	90669	90669					0.10633424605566688
TVELAKKLL	9	Unmodified	_TVELAKKLL_					0	0	0			REV__ENSG00000152778|ENST00000371795|IFIT5	REV__ENSG00000152778|ENST00000371795|IFIT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.82635498046875	2	507.831517	1013.64848	-0.36082	-0.00018324	0.0027945	1.4191E-06	-0.35803	-0.00018182	507.8314156832862	41.055	0.72412	40.827	40.473	41.197	-0.2278					30	18	2	0	0	0	0.024535	1	3541	3541		25.45	0.93098	1	956990	+		81622	24863	56894	56988	90670	90670					0.14220363550907678
TVELKRYG	8	Unmodified	_TVELKRYG_					0	0	0		nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1;nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENSG00000144596|ENST00000621039|GRIP2	nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000144596|Q9C0E4-2|GRIP2	nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.238037109375	2	483.274367	964.53418	-0.24871	-0.0001202	1.7001	0.00082164	1.4514	0.00070144	483.2750620295007	41.523	0.31389	41.293	41.08	41.394	-0.23029					11	7	2	0	0	0	0.027866	1	3665	3665		25.45	0	1	82466			81623	6504;5752	56895	56989	90671	90671					0.05049473788812975
TVELSRFM	8	Oxidation (M)	_TVELSRFM(Oxidation (M))_		TVELSRFM(1)		TVELSRFM(46)	0	0	1			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.8089599609375	2	499.75241	997.490267	-0.40235	-0.00020107	0.57638	0.00028805	0.17404	8.6975E-05	499.7525896112542	37.978	0.21109	37.799	37.665	37.876	-0.17929					7	5	2	0	0	0	0.027866	1	3106	3106		45.952	15.448	1	66263	+		81624	36693	56896	56990	90672	90672		971			-0.008578786998214127
TVEPRRRKFHK	11	Unmodified	_TVEPRRRKFHK_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENST00000465749.2_1_10:61846327-61848039:-|nuORF;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.2887268066406	3	485.288143	1452.8426	-1.3404	-0.0006505	3.0175	0.0014644	1.6771	0.00081387	485.28959287467956	65.264	0.8198	65.062	64.738	65.557	-0.20254					60	19	4	0	0	0	1.0327	1	7454	7454		29.551	2.801	1	1553600			81625	6183;18381	56897	56991	90673	90673					0.134291327595065
TVEPVKSSP	9	Unmodified	_TVEPVKSSP_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2924499511719	2	472.258382	942.502212	0.47273	0.00022325	-1.1366	-0.00053677	-0.66388	-0.00031352	472.25470640466835	52.086	1.2344	52.086	51.667	52.901	0					76	32	4	0	0	0	0.024261	1	5681	5681		54.776	0	1	1122800	+		81626	26852	56898	56992	90674	90674					0.02866061315000934
TVERGVVSLF	10	Unmodified	_TVERGVVSLF_					0	0	0		ENSG00000111241|ENST00000228837|FGF6	ENSG00000111241|ENST00000228837|FGF6	ENSG00000111241|ENST00000228837|FGF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8134155273438	2	553.813856	1105.61316	0.029142	1.6139E-05	0.0674	3.7327E-05	0.096542	5.3466E-05	553.8138096486558	58.48	0.80201	58.292	58.023	58.825	-0.18787					33	19	3	0	0	0	0.57594	1	6436	6436		79.713	2.395	1	4929500			81627	3095	56899	56993	90675	90675					0.06457701023077789
TVEVAEPKN	9	Unmodified	_TVEVAEPKN_					0	0	0			REV__ENSG00000163466|ENST00000315717|ARPC2	REV__ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.76361083984375	2	493.761289	985.508025	0.39168	0.0001934	4.0467	0.0019981	4.4384	0.0021915	493.7630040976331	74.545	0.96027	74.286	73.944	74.904	-0.25887					67	22	6	0	0	0	0.50848	1	9091	9091		58.782	2.3482	1	1153900	+		81628	25568	56900	56994	90676	90676					0.014691598266608707
TVEVTRFIV	9	Unmodified	_TVEVTRFIV_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.3119506835938	2	532.310949	1062.60735	-0.051736	-2.7539E-05	0.91933	0.00048937	0.86759	0.00046183	532.3111409093975	70.973	0.90414	70.701	70.493	71.397	-0.27185					36	20	3	0	0	0	0.2101	1	8267	8267		87.696	1.8346	1	664980	+		81629	25042	56901	56995	90677	90677					0.07854602511406483
TVEVTRFIV	9	Unmodified	_TVEVTRFIV_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	532.310949	1062.60735	-0.051736	-2.7539E-05	0.91933	0.00048937	0.86759	0.00046183	532.3111409093975	70.973	0.90414	70.701	70.493	71.397	-0.27185	0.061164	-2.7068E-05	NaN	87.696	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	664980	+		81630	25042	56901	56995							0.07854602511406483
TVEVTRFIV	9	Unmodified	_TVEVTRFIV_					0	0	0			REV__ENSG00000155974|ENST00000359742|GRIP1	REV__ENSG00000155974|ENST00000359742|GRIP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	532.310949	1062.60735	-0.47742	-0.00025413	1.2375	0.00065873	0.76008	0.0004046	532.3113159430982	70.934	0.88735	70.677	70.439	71.327	-0.25713	0.037308	0.00031166	NaN	87.696	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782850	+		81631	25042	56901	56995							0.07854602511406483
TVEYHEGSEP	10	Unmodified	_TVEYHEGSEP_					0	0	0			REV__nc|ENSG00000142002|Q86TI2|DPP9	REV__nc|ENSG00000142002|Q86TI2|DPP9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.3012084960938	2	574.248743	1146.48293	0.94978	0.00054541	2.4888	0.0014292	3.4386	0.0019746	574.250065201902	67.903	0.53621	67.648	67.367	67.903	-0.25516					32	12	3	0	0	0	0.03519	1	7824	7824		26.693	0	1	701370	+		81632	24130	56902	56996	90678	90678					-0.084449397665594
TVFERISLA	9	Unmodified	_TVFERISLA_					0	0	0		ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS	ENSG00000164654|ENST00000340080|MIOS	ENSG00000164654|ENST00000340080|MIOS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.780517578125	2	518.295299	1034.57605	-0.63499	-0.00032911	-0.28407	-0.00014723	-0.91906	-0.00047634	518.2945671135027	44.888	0.56063	44.929	44.582	45.142	0.040844					24	15	2	0	0	0	0.024487	1	4202	4202		17.365	0	1	91252			81633	7303	56903	56997	90679	90679					0.060140294773418645
TVFEYASSTP	10	Unmodified	_TVFEYASSTP_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-4|MED25	REV__nc|ENSG00000104973|Q71SY5-4|MED25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.2618408203125	2	551.258579	1100.50261	-1.2865	-0.00070921	-1.0466	-0.00057695	-2.3331	-0.0012862	551.7603775545019	91.338	0.46456	91.338	91.133	91.597	0					17	10	2	0	0	0	0.03519	1	11547	11547		25.574	0	1	133290	+		81634	36535	56904	56998	90680	90680					-0.04362563755807969
TVFGSLIIGY	10	Unmodified	_TVFGSLIIGY_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2;ATF7-ATP5G2|1|fusion;ENST00000433580.1_1_1:209441145-209441361:-|nuORF;ENST00000442175.1_1_X:41958063-41958324:-|nuORF;ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENSG00000154518|ENST00000284727|ATP5MC3	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2973022460938	2	535.30005	1068.58555	-0.70097	-0.00037523	3.3227	0.0017786	2.6217	0.0014034	535.3018205363583	29.069	0.58746	29.147	28.739	29.327	0.078346					19	14	2	0	0	0	0.03519	1	1646	1646		26.693	14.486	1	218160			81635	4889	56905	56999	90681	90681					0.05399797762856906
TVFLLIKW	8	Unmodified	_TVFLLIKW_					0	0	0		ENST00000399034.7_1_7:35946139-35946175:+|nuORF	ENST00000399034.7_1_7:35946139-35946175:+|nuORF	ENST00000399034.7_1_7:35946139-35946175:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.32415771484375	2	510.318046	1018.62154	-0.46725	-0.00023845	-3.446	-0.0017586	-3.9133	-0.001997	510.3158576592784	79.112	0.45352	79.112	78.951	79.405	0					19	10	2	0	0	0	0.027866	1	9809	9809		18.324	0	1	183070			81636	13631	56906	57000	90682	90682					0.11297299730370014
TVFLSSQIT	9	Unmodified	_TVFLSSQIT_					0	0	0		ENST00000475312.1_1_1:85491576-85494918:-|nuORF	ENST00000475312.1_1_1:85491576-85494918:-|nuORF	ENST00000475312.1_1_1:85491576-85494918:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2953186035156	2	498.274032	994.533512	0.40855	0.00020357	3.386	0.0016872	3.7946	0.0018907	498.27566614090716	41.027	0.60714	40.904	40.653	41.26	-0.12317					28	16	2	0	0	0	0.02435	1	3667	3667		26.693	0	1	326410			81637	15059	56907	57001	90683	90683					0.036026343490902946
TVFVIIKSAS	10	Unmodified	_TVFVIIKSAS_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.842041015625	2	532.82115	1063.62775	-0.96272	-0.00051296	-1.0927	-0.00058219	-2.0554	-0.0010951	532.8210750510085	51.672	0.61567	51.524	51.3	51.915	-0.14735					31	17	2	0	0	0	0.03519	1	5432	5432		13.454	0	1	317110	+		81638	22806	56908	57002	90684	90684					0.0984777317123644
TVGAVVGPK	9	Unmodified	_TVGAVVGPK_					0	0	0		ENST00000328086.11_1_16:25268599-25269199:-|nuORF	ENST00000328086.11_1_16:25268599-25269199:-|nuORF	ENST00000328086.11_1_16:25268599-25269199:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2689208984375	2	414.252903	826.491253	-0.28985	-0.00012007	2.1153	0.00087629	1.8255	0.00075622	414.254268735962	28.477	0.36336	28.325	28.121	28.484	-0.15195					14	8	3	0	0	0	0.024262	1	1641	1641		16.473	0	1	44238			81639	12298	56909	57003	90685	90685					0.07106703731381003
TVGEGEDHD	9	Unmodified	_TVGEGEDHD_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7355041503906	2	479.691061	957.367569	0.11539	5.5352E-05	-0.054187	-2.5993E-05	0.061204	2.9359E-05	479.690877699808	59.944	0.25695	59.744	59.538	59.795	-0.20016					11	6	2	0	0	0	0.022924	1	6815	6815		85.359	0	1	236760			81640	2045;18118	56910	57004	90686	90686					-0.11282043897563199
TVGGITSVEV	10	Unmodified	_TVGGITSVEV_					0	0	0			REV__ENST00000521362.1_1_5:159659088-159665663:+|nuORF	REV__ENST00000521362.1_1_5:159659088-159665663:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2822570800781	2	481.263665	960.512776	0.34003	0.00016364	0.69721	0.00033554	1.0372	0.00049919	481.26379741540546	46.206	0.32279	46.206	46.056	46.378	0					13	8	2	0	0	0	0.03519	1	4565	4565		47.657	8.4045	1	95618	+		81641	26445	56911	57005	90687	90687					0.03094043969440463
TVGGPGSALLL	11	Unmodified	_TVGGPGSALLL_					0	0	0			REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2432861328125	2	492.78985	983.565146	-0.77764	-0.00038321	-0.14827	-7.3066E-05	-0.92591	-0.00045628	492.789497899838	37.612	0.38443	37.549	37.305	37.69	-0.063385					15	10	2	0	0	0	0.024768	1	3038	3038		39.253	0	1	342120	+		81642	33681	56912	57006	90688	90688					0.07270627103048355
TVGINAIKEI	10	Unmodified	_TVGINAIKEI_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.3165283203125	2	529.316232	1056.61791	-0.1548	-8.1939E-05	-0.37833	-0.00020026	-0.53313	-0.00028219	529.3159769167021	36.361	0.84978	36.145	35.879	36.729	-0.21661					63	21	5	0	0	0	0.34774	2	2827	2827;2836		104.06	4.946	1	7885400			81643	10119	56913	57007	90689;90690	90689					0.09186585165844008
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2794494628906	2	443.279452	884.544351	0.21705	9.6214E-05	-0.25938	-0.00011498	-0.042332	-1.8765E-05	443.2793232355934	54.927	2.8307	54.927	54.591	57.422	0					194	79	4	0	0	0	0.15677	7	6087	6014;6025;6037;6049;6062;6074;6087		147.69	9.2942	1	13365000			81644	7775	56914	57008	90691;90692;90693;90694;90695;90696;90697	90697					0.09746081514037996
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2796936035156	2	443.279452	884.544351	0.054101	2.3982E-05	-0.12816	-5.681E-05	-0.074057	-3.2828E-05	443.27938040979535	55.029	1.8563	54.879	54.507	56.364	-0.15036					149	51	4	0	0	0	0.24001	7	6005	6005;6013;6025;6049;6062;6074;6089		133.81	0	1	12942000			81645	7775	56914	57008	90698;90699;90700;90701;90702;90703;90704	90698					0.09746081514037996
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2795104980469	2	443.279452	884.544351	-0.1376	-6.0997E-05	-0.026017	-1.1533E-05	-0.16362	-7.253E-05	443.27943161565787	54.761	2.0742	54.859	54.361	56.435	0.098015					170	57	4	0	0	0	0.15677	9	5970	5909;5920;5932;5945;5957;5970;5982;5994;6008		147.69	0	1	14345000			81646	7775	56914	57008	90705;90706;90707;90708;90709;90710;90711;90712;90713	90710					0.09746081514037996
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.2796325683594	2	443.279452	884.544351	-0.67594	-0.00029963	0.70063	0.00031057	0.024683	1.0942E-05	443.27972031723766	54.888	2.5286	54.742	54.389	56.917	-0.14609					174	67	4	0	0	0	0.18427	6	5860	5837;5848;5860;5872;5885;5898		143.11	9.2942	1	10474000			81647	7775	56914	57008	90714;90715;90716;90717;90718;90719	90716					0.09746081514037996
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.2794494628906	2	443.279452	884.544351	-0.17339	-7.686E-05	0.026549	1.1769E-05	-0.14684	-6.5092E-05	443.27940623862924	54.999	2.3317	54.768	54.387	56.718	-0.23087					147	63	4	0	0	0	0.15677	5	5914	5855;5865;5877;5902;5914		147.69	21.595	1	11278000			81648	7775	56914	57008	90720;90721;90722;90723;90724	90724					0.09746081514037996
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.27978515625	2	443.279452	884.544351	0.55456	0.00024582	-0.64779	-0.00028715	-0.093233	-4.1328E-05	443.2791051929255	54.982	2.6583	54.776	54.395	57.053	-0.20613					184	71	5	0	0	0	0.18427	4	5871	5847;5871;5885;5897		143.11	9.2942	1	11537000			81649	7775	56914	57008	90725;90726;90727;90728	90726					0.09746081514037996
TVGLVEYYN	9	Unmodified	_TVGLVEYYN_					0	0	0			REV__ENST00000567680.1_1_15:66064063-66064450:-|nuORF;REV__ENSG00000164031|ENST00000442697|DNAJB14	REV__ENSG00000164031|ENST00000442697|DNAJB14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.8187255859375	2	529.263665	1056.51278	-0.48078	-0.00025446	0.39855	0.00021094	-0.082237	-4.3525E-05	529.2635905448948	70.081	0.66228	69.814	69.536	70.198	-0.26725					32	15	3	0	0	0	0.024457	1	8174	8174		21.96	0	1	788360	+		81650	25672;35324	56915	57009	90729	90729					-0.013219560305742561
TVGMATMILT	10	Unmodified	_TVGMATMILT_					0	0	0		ENSG00000197386|ENST00000355072|HTT;HTT|p.P1176Lfs*3|1|0.36|ENSG00000197386|chr4:3154316-3154316|C/-|frameshift_variant;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.8109130859375	2	519.272121	1036.52969	-2.2521	-0.0011695	-1.7678	-0.00091796	-4.0199	-0.0020874	519.2707154819842	60.303	0.5964	60.382	60.088	60.684	0.078884					27	15	3	0	0	0	0.03519	1	6876	6876		19.104	3.4617	1	237400			81651	9990	56916	57010	90730	90730					0.012885052593674118
TVGNFQIPC	9	Unmodified	_TVGNFQIPC_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.7304992675781	2	489.739302	977.464052	-0.45254	-0.00022163	1.141	0.00055879	0.68845	0.00033716	489.7385960193144	27.529	0.21957	27.516	27.352	27.572	-0.012983					6	5	2	0	0	0	0.024466	1	1493	1493		25.45	4.5032	1	23145			81652	18787	56917	57011	90731	90731					-0.025581478713206707
TVGPKTFSW	9	Unmodified	_TVGPKTFSW_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	511.76885986328125	2	511.768917	1021.52328	-0.12564	-6.43E-05	0.38738	0.00019825	0.26174	0.00013395	511.7687187522557	58.538	0.88869	58.35	58.05	58.938	-0.18795					41	20	3	0	0	0	0.42604	1	6441	6441		64.207	13.015	1	1921400			81653	6954	56918	57012	90732	90732					0.013380714145114325
TVGPKTFSW	9	Unmodified	_TVGPKTFSW_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.7691650390625	2	511.768917	1021.52328	0.58535	0.00029956	0.065501	3.3521E-05	0.65085	0.00033309	511.76840875176146	58.585	0.93525	58.344	58.001	58.936	-0.24165					39	19	3	0	0	0	0.54416	1	6428	6428		56.434	5.0983	1	2096600			81654	6954	56918	57012	90733	90733					0.013380714145114325
TVGRSFEL	8	Unmodified	_TVGRSFEL_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.7444763183594	2	454.745442	907.476331	0.36146	0.00016437	-1.2384	-0.00056316	-0.87694	-0.00039879	454.7447774284476	97.221	1.6099	97.221	96.748	98.358	0					85	36	3	0	0	0	1.0574	1	12474	12474		24.203	0	1	269640	+		81655	28522	56919	57013	90734	90734					0.018892118633857535
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.3195190429688	2	563.316763	1124.61897	-0.53172	-0.00029953	4.2818	0.002412	3.7501	0.0021125	563.3189967024028	95.758	1.3924	95.758	95.179	96.571	0					75	32	4	0	0	0	0.37509	2	12191	12191;12203		101.25	22.989	1	1779400	+		81656	26924	56920	57014	90735;90736	90735					0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.3189086914062	2	563.316763	1124.61897	0.10361	5.8363E-05	3.6028	0.0020295	3.7064	0.0020879	563.3185949025449	95.66	1.0493	95.664	95.175	96.224	0.0033722					75	24	4	0	0	0	0.37509	2	12150	12138;12150		101.25	10.883	1	1775500	+		81657	26924	56920	57014	90737;90738	90738					0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.3192138671875	2	563.316763	1124.61897	0.18613	0.00010485	3.5802	0.0020168	3.7664	0.0021217	563.3185305319165	95.796	1.4801	95.798	95.094	96.574	0.0020752					82	34	4	0	0	0	0.56936	3	12130	12119;12130;12145		80.455	16.247	1	1417400	+		81658	26924	56920	57014	90739;90740;90741	90740					0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.3186645507812	2	563.316763	1124.61897	0.0094622	5.3302E-06	3.8296	0.0021573	3.8391	0.0021626	563.3186847721109	95.699	1.4595	95.563	94.723	96.182	-0.13689					76	33	5	0	0	0	0.34774	3	11798	11798;11810;11824		104.06	16.36	1	1659700	+		81659	26924	56920	57014	90742;90743;90744	90742					0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.3189086914062	2	563.316763	1124.61897	0.67517	0.00038034	3.059	0.0017232	3.7342	0.0021035	563.3182500288241	95.697	1.9295	95.575	94.38	96.31	-0.12251					89	44	5	0	0	0	0.47897	2	11825	11813;11825		90.601	16.153	1	2190700	+		81660	26924	56920	57014	90745;90746	90746					0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.3193359375	2	563.316763	1124.61897	-0.43261	-0.0002437	4.1788	0.002354	3.7462	0.0021103	563.3188593019647	95.711	1.13	95.559	94.882	96.012	-0.15197					78	25	5	0	0	0	0.56936	3	11799	11799;11809;11822		80.455	8.5771	1	1998200	+		81661	26924	56920	57014	90747;90748;90749	90747					0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	563.316763	1124.61897	0.18613	0.00010485	3.5802	0.0020168	3.7664	0.0021217	563.3185305319165	95.796	1.4801	95.798	95.094	96.574	0.0020752	0.14492	-0.00025599	NaN	104.06	82	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1417400	+		81662	26924	56920	57014							0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	563.316763	1124.61897	0.0094622	5.3302E-06	3.8296	0.0021573	3.8391	0.0021626	563.3186847721109	95.699	1.4595	95.563	94.723	96.182	-0.13689	-0.090147	2.5004E-05	NaN	104.06	76	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1659700	+		81663	26924	56920	57014							0.06164799534781196
TVHDKVVQSI	10	Unmodified	_TVHDKVVQSI_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	563.316763	1124.61897	-0.43261	-0.0002437	4.1788	0.002354	3.7462	0.0021103	563.3188593019647	95.711	1.13	95.559	94.882	96.012	-0.15197	-0.093209	0.0004184	NaN	104.06	78	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1998200	+		81664	26924	56920	57014							0.06164799534781196
TVHDNQSVW	9	Unmodified	_TVHDNQSVW_					0	0	0			REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8314819335938	2	543.254163	1084.49377	0.055104	2.9935E-05	-0.49898	-0.00027107	-0.44387	-0.00024114	543.253520797834	71.254	0.61807	71.254	70.948	71.566	0					42	15	4	0	0	0	0.024381	1	8637	8637		21.96	0	1	973780	+		81665	21680	56921	57015	90750	90750					-0.045094926016190584
TVHFEVAIT	9	Unmodified	_TVHFEVAIT_					0	0	0		nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6;ENST00000529467.1_1_8:42620195-42623609:-|nuORF;ENST00000530869.1_1_8:42614249-42623609:-|nuORF	nc|ENSG00000147434|Q15825-2|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7848205566406	2	508.7742	1015.53385	-0.75638	-0.00038483	1.1867	0.00060375	0.4303	0.00021892	508.7744539911588	73.073	0.65546	73.073	72.782	73.438	0					22	16	2	0	0	0	0.024354	1	8870	8870		38.806	0	1	146580			81666	5966	56922	57016	90751	90751					0.02670054068948957
TVHFVAEDVD	10	Unmodified	_TVHFVAEDVD_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.2716064453125	2	566.269478	1130.5244	0.43895	0.00024856	3.6497	0.0020667	4.0886	0.0023153	566.2717012848174	96.177	2.647	96.04	95.243	97.89	-0.1367					96	60	4	0	0	0	0.71272	1	11908	11908		66.429	0.6261	1	1499600			81667	6720	56923	57017	90752	90752					-0.03563759007238332
TVHIINLR	8	Unmodified	_TVHIINLR_					0	0	0			REV__nc|ENSG00000136877|Q05932-3|FPGS	REV__nc|ENSG00000136877|Q05932-3|FPGS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.21942138671875	2	483.298176	964.581799	0.16403	7.9275E-05	-0.51271	-0.00024779	-0.34868	-0.00016852	483.29776683707735	32.113	0.6077	31.92	31.685	32.293	-0.19261					21	13	2	0	0	0	0.027866	1	2227	2227		12.959	0	1	180910	+		81668	23698	56924	57018	90753	90753					0.09809172779648634
TVHLLQKQ	8	Unmodified	_TVHLLQKQ_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.21942138671875	2	483.790184	965.565815	0.25066	0.00012127	0.3849	0.00018621	0.63557	0.00030748	483.78986898822586	32.17	0.56419	31.977	31.771	32.335	-0.19261					20	12	2	0	0	0	0.027866	1	2227	2227		25.45	0	1	131510			81669	8336	56925	57019	90754	90754					0.08165466542766353
TVHRSYQKF	9	Unmodified	_TVHRSYQKF_					0	0	0			REV__nc|ENSG00000159374|Q8TC57-4|M1AP	REV__nc|ENSG00000159374|Q8TC57-4|M1AP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.279541015625	2	583.309272	1164.60399	-1.2818	-0.0007477	-0.9185	-0.00053577	-2.2003	-0.0012835	583.308864527569	48.026	0.58359	47.75	47.421	48.004	-0.27598					32	15	3	0	0	0	0.024427	1	4726	4726		34.173	8.5985	1	417670	+		81670	25250	56926	57020	90755	90755					0.028273524574160547
TVHSIPLTI	9	Unmodified	_TVHSIPLTI_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.79266357421875	2	490.792392	979.570232	-0.30736	-0.00015085	0.40613	0.00019932	0.098774	4.8477E-05	490.79243026213453	60.918	1.2665	60.918	59.988	61.255	0					72	33	3	0	0	0	0.014907	2	7031	7019;7031		162.31	46.847	1	3125800			81671	9572	56927	57021	90756;90757	90757					0.07962930965663872
TVHSIPLTI	9	Unmodified	_TVHSIPLTI_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.7923583984375	2	490.792392	979.570232	-0.32433	-0.00015918	0.50891	0.00024977	0.18458	9.0591E-05	490.7924942302919	61.172	0.81722	60.958	60.457	61.274	-0.21339					57	21	3	0	0	0	0.08613	2	7020	7020;7032		115.46	21.453	1	3300000			81672	9572	56927	57021	90758;90759	90758					0.07962930965663872
TVHSIPLTI	9	Unmodified	_TVHSIPLTI_					0	0	0		nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000487968.5_1_22:23626151-23631864:+|nuORF	nc|ENSG00000186716|P11274-2|BCR	nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.79266357421875	2	490.792392	979.570232	-0.97421	-0.00047814	1.1353	0.00055721	0.16112	7.9078E-05	490.79278205970064	60.852	1.2347	60.923	60.041	61.276	0.071125					70	32	3	0	0	0	0.13494	2	6929	6929;6942		102.77	20.468	1	3257200			81673	9572	56927	57021	90760;90761	90760					0.07962930965663872
TVHTKTTL	8	Unmodified	_TVHTKTTL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101460529-101460730:+|nuORF;ENST00000474883.5_1_20:17934783-17949378:-|nuORF;ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MSMS	OPSCC_40_ClassI_Rep-1	4	450.7610168457031	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.253	1	22.064	21.564	22.564	-0.18894								0	0	0	0.42824	1	775	775		63.306	19.189	1				81674	1887	56928	57022	90762	90762					0.053857848974644185
TVHTKTTL	8	Unmodified	_TVHTKTTL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101460529-101460730:+|nuORF;ENST00000474883.5_1_20:17934783-17949378:-|nuORF;ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MSMS	OPSCC_40_ClassI_Rep-1	4	450.7611083984375	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.351	1	22.162	21.662	22.662	-0.18894								0	0	0	0.46303	1	788	788		58.782	9.3404	1				81675	1887	56928	57022	90763	90763					0.053857848974644185
TVHTKTTL	8	Unmodified	_TVHTKTTL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101460529-101460730:+|nuORF;ENST00000474883.5_1_20:17934783-17949378:-|nuORF;ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.7608642578125	2	450.761092	899.507631	-0.5886	-0.00026532	0.90987	0.00041013	0.32127	0.00014482	450.7613134549622	22.394	0.87933	22.209	21.858	22.738	-0.18539					40	18	4	0	0	0	0.68164	1	786	786		68.787	22.835	1	541270			81676	1887	56928	57022	90764	90764					0.053857848974644185
TVHTKTTL	8	Unmodified	_TVHTKTTL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101460529-101460730:+|nuORF;ENST00000474883.5_1_20:17934783-17949378:-|nuORF;ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MSMS	OPSCC_40_ClassI_Rep-3	6	450.7609558105469	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.399	1	22.197	21.697	22.697	-0.20199								0	0	0	0.3462	1	761	761		73.975	8.1716	1				81677	1887	56928	57022	90765	90765					0.053857848974644185
TVHTKTTL	8	Unmodified	_TVHTKTTL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101460529-101460730:+|nuORF;ENST00000474883.5_1_20:17934783-17949378:-|nuORF;ENST00000469704.1_1_20:17934783-17949290:-|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MSMS	OPSCC_40_ClassI_Rep-3	6	450.7610168457031	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.504	1	22.302	21.802	22.802	-0.20199								0	0	0	0.35696	1	775	775		96.19	10.831	1				81678	1887	56928	57022	90766	90766					0.053857848974644185
TVHVKTVVH	9	Unmodified	_TVHVKTVVH_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.30499267578125	2	510.303458	1018.59236	0.47555	0.00024268	2.6877	0.0013716	3.1633	0.0016142	510.30466137405284	19.018	1.565	18.857	18.54	20.105	-0.16079					67	31	4	0	0	0	0.6504	1	384	384		49.442	8.6634	1	661950		+	81679	540	56929	57023	90767	90767					0.08381155434085485
TVHYSQIEERG	11	Unmodified	_TVHYSQIEERG_					0	0	0			REV__ENST00000307662.4_1_5:150037504-150037675:+|nuORF	REV__ENST00000307662.4_1_5:150037504-150037675:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	440.7657165527344	3	440.217719	1317.63133	-0.43776	-0.00019271	0.75073	0.00033048	0.31296	0.00013777	440.5528139082817	37.512	0.27935	37.302	37.192	37.472	-0.2092					10	6	2	0	0	0	0.024735	1	3024	3024		27.644	8.3812	1	59308	+		81680	30142	56930	57024	90768	90768					-0.014782087928551846
TVIAESLRE	9	Unmodified	_TVIAESLRE_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2920227050781	2	509.282389	1016.55022	-0.63402	-0.00032289	1.5434	0.000786	0.90934	0.00046311	509.2834032643936	64.545	0.77898	64.289	63.999	64.778	-0.25563					37	19	3	0	0	0	0.024323	1	7366	7366		53.351	5.4358	1	881330	+		81681	25264	56931	57025	90769	90769					0.04261135235049096
TVIAYHLL	8	Unmodified	_TVIAYHLL_					0	0	0			REV__nc|ENSG00000152359|Q8NA72-3|POC5	REV__nc|ENSG00000152359|Q8NA72-3|POC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2565002441406	2	465.276378	928.538203	0.5741	0.00026711	-1.1948	-0.00055589	-0.62066	-0.00028878	465.2756015055869	59.007	0.65723	59.007	58.787	59.444	0					44	17	3	0	0	0	0.027866	1	6782	6782		77.944	17.65	1	2415000	+		81682	24834	56932	57026	90770	90770					0.07107563282522733
TVIHIRSET	9	Unmodified	_TVIHIRSET_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2764892578125	2	528.29583	1054.57711	-0.36047	-0.00019044	1.3638	0.00072049	1.0033	0.00053005	528.2958803560111	49.186	0.39262	49.186	48.969	49.362	0					22	10	3	0	0	0	0.024457	1	5055	5055		21.96	0	1	405780			81683	5535	56933	57027	90771	90771					0.052002438462295686
TVIHIRSET	9	Unmodified	_TVIHIRSET_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.29583	1054.57711	-0.27889	-0.00014734	1.0194	0.00053856	0.74053	0.00039122	528.2964415490886	49.534	0.2721	49.254	49.086	49.359	-0.27977	0.04161	-0.00013801	NaN	10.265	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102780			81684	5535	56933	57027							0.052002438462295686
TVIHIRSET	9	Unmodified	_TVIHIRSET_					0	0	0		ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2	ENSG00000142089|ENST00000399808|IFITM3	ENSG00000142089|ENST00000399808|IFITM3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.29583	1054.57711	0.074043	3.9117E-05	1.2736	0.00067285	1.3477	0.00071196	528.7983949333712	49.37	0.3436	49.187	49	49.344	-0.18206	-0.025142	0.00013057	NaN	10.265	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178260			81685	5535	56933	57027							0.052002438462295686
TVIIINGALT	10	Unmodified	_TVIIINGALT_					0	0	0			REV__ENSG00000196184|ENST00000423932|OR10J1	REV__ENSG00000196184|ENST00000423932|OR10J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.82745361328125	2	507.813325	1013.6121	0.20996	0.00010662	-0.15107	-7.6713E-05	0.05889	2.9905E-05	507.81305997360806	67.732	0.89278	67.752	67.227	68.12	0.020393					29	22	2	0	0	0	0.03519	1	7994	7994		47.96	0	1	401160	+		81686	28141	56934	57028	90772	90772					0.10583486654184071
TVIIKFPK	8	Unmodified	_TVIIKFPK_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.97149658203125	2	473.310221	944.605889	-0.40894	-0.00019356	0.19531	9.244E-05	-0.21364	-0.00010112	473.31021182017236	49.062	0.51154	48.783	48.538	49.049	-0.27977					30	13	3	0	0	0	0.027866	1	4933	4933		3.6843	0	1	868560	+		81687	26880	56935	57029	90773	90773					0.1313701321331564
TVILSRNSLS	10	Unmodified	_TVILSRNSLS_					0	0	0			REV__nc|ENSG00000164418|Q13002-6|GRIK2;REV__nc|ENSG00000164418|Q13002-3|GRIK2	REV__nc|ENSG00000164418|Q13002-6|GRIK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3161010742188	2	545.316763	1088.61897	0.47689	0.00026006	-1.2256	-0.00066833	-0.74869	-0.00040827	545.315895622085	20.721	0.64082	20.526	20.236	20.877	-0.19577					35	12	4	0	0	0	1.0002	1	583	583		45.972	0	1	270750	+		81688	36866;25753	56936	57030	90774	90774					0.07820799534761136
TVITPSLNP	9	Unmodified	_TVITPSLNP_					0	0	0		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2683410644531	2	471.26875	940.522947	0.072451	3.4144E-05	0.071321	3.3611E-05	0.14377	6.7755E-05	471.2686955467828	67.232	1.2774	66.943	66.623	67.901	-0.28834					84	31	4	0	0	0	0.028071	1	8003	8003		143.11	3.1364	1	7855900			81689	10372	56937	57031	90775	90775					0.05030651694664812
TVITPSLNP	9	Unmodified	_TVITPSLNP_					0	0	0		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2688293457031	2	471.26875	940.522947	0.3322	0.00015656	-0.22342	-0.00010529	0.10879	5.1268E-05	471.2685481476497	66.94	1.181	66.964	66.643	67.824	0.023911					89	28	5	0	0	0	0.28753	1	7929	7929		77.318	3.0625	1	7533000			81690	10372	56937	57031	90776	90776					0.05030651694664812
TVIVPEEKYNN	11	Unmodified	_TVIVPEEKYNN_					0	0	0			REV__nc|ENSG00000165480|Q8IX90-3|SKA3	REV__nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.2481994628906	3	435.894354	1304.66123	-0.13434	-5.856E-05	-2.4102	-0.0010506	-2.5445	-0.0011091	435.893609268696	34.383	0.4351	34.176	33.931	34.366	-0.20696					17	10	2	0	0	0	0.024734	1	2499	2499		27.644	0	1	118690			81691	25890	56938	57032	90777	90777					0.021087301525085422
TVIVVESLEP	10	Unmodified	_TVIVVESLEP_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8239135742188	2	543.308072	1084.60159	-0.78563	-0.00042684	-0.006899	-3.7483E-06	-0.79253	-0.00043059	543.307695503442	66.674	0.57407	66.674	66.552	67.126	0					15	13	2	0	0	0	0.03519	1	7973	7973		39.253	6.4404	1	273350	+		81692	25715	56939	57033	90778	90778					0.06267459209084336
TVIVVESLEP	10	Unmodified	_TVIVVESLEP_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.308072	1084.60159	-1.0493	-0.0005701	-0.37263	-0.00020245	-1.4219	-0.00077256	543.3077942009967	66.767	0.25558	66.791	66.643	66.898	0.023911	0.05844	-0.00020375	NaN	24.519	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263920	+		81693	25715	56939	57033							0.06267459209084336
TVIWDKNN	8	Unmodified	_TVIWDKNN_					0	0	0		ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	ENSG00000079691|ENST00000329474|CARMIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7742919921875	2	495.256174	988.497795	0.77402	0.00038334	-1.2974	-0.00064252	-0.52333	-0.00025918	495.25538322390076	49.318	0.47587	49.318	49.106	49.582	0					17	12	2	0	0	0	0.027866	1	5123	5123		20.947	0	1	153090			81694	1672	56940	57034	90779	90779					0.0030859689209137287
TVIYVAGAFD	10	Unmodified	_TVIYVAGAFD_					0	0	0		nc|ENSG00000185813|Q99447-2|PCYT2;nc|ENSG00000185813|Q99447-4|PCYT2;ENSG00000185813|ENST00000538936|PCYT2;nc|ENSG00000185813|Q99447-3|PCYT2	nc|ENSG00000185813|Q99447-2|PCYT2	nc|ENSG00000185813|Q99447-2|PCYT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.7999877929688	2	528.274032	1054.53351	-0.10845	-5.729E-05	0.10433	5.5115E-05	-0.0041179	-2.1754E-06	528.2739596465409	83.252	0.94852	83.113	82.392	83.34	-0.1386					37	21	3	0	0	0	0.03519	1	10063	10063		42.396	14.514	1	97950			81695	9478	56941	57035	90780	90780					0.008426343491009902
TVKFKSRIS	9	Unmodified	_TVKFKSRIS_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.8088989257812	2	533.324391	1064.63423	-0.063104	-3.3655E-05	-0.055841	-2.9782E-05	-0.11895	-6.3437E-05	533.3241864130258	41.186	0.49701	41.063	40.797	41.294	-0.12318					26	13	3	0	0	0	0.024541	1	3645	3645		17.365	0.89182	1	285770			81696	423	56942	57036	90781	90781					0.1044971112262374
TVKFKSRIS	9	Unmodified	_TVKFKSRIS_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.324391	1064.63423	-0.37679	-0.00020095	-0.24452	-0.00013041	-0.62131	-0.00033136	533.3243712340126	40.991	0.42469	40.991	40.8	41.225	0	-0.13986	-0.0001501	NaN	17.365	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172590			81697	423	56942	57036							0.1044971112262374
TVKFKSRIS	9	Unmodified	_TVKFKSRIS_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|67	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.324391	1064.63423	-0.35023	-0.00018679	-0.11556	-6.1631E-05	-0.46579	-0.00024842	533.3241624558732	41.316	0.48811	41.339	41.076	41.564	0.023006	0.20812	-1.254E-05	NaN	17.365	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208850			81698	423	56942	57036							0.1044971112262374
TVKFTSVPD	9	Unmodified	_TVKFTSVPD_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.S3753Kfs*11|1|0.26|ENSG00000183091|chr2:151610547-151610548|-/T|frameshift_variant;NEB|p.A3861Gfs*3|1|0.27|ENSG00000183091|chr2:151609830-151609831|-/T|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2682800292969	2	497.266207	992.517862	-0.39739	-0.00019761	4.3181	0.0021473	3.9208	0.0019497	497.26831478291894	35.326	1.0994	35.326	34.629	35.728	0					103	28	5	0	0	0	0.53979	1	2676	2676		56.721	1.9447	1	13547000			81699	9199	56943	57037	90782	90782					0.021303478320419345
TVKHPSKKF	9	Unmodified	_TVKHPSKKF_					0	0	0		ENST00000511604.5_1_3:131753576-131754217:-|nuORF	ENST00000511604.5_1_3:131753576-131754217:-|nuORF	ENST00000511604.5_1_3:131753576-131754217:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.252197265625	2	536.319109	1070.62366	-0.051402	-2.7568E-05	-1.6829	-0.00090255	-1.7343	-0.00093012	536.3179246513132	80.323	1.0609	80.085	79.747	80.808	-0.23784					30	25	2	0	0	0	0.024539	1	9683	9683		27.882	10.414	1	273470			81700	15840	56944	57038	90783	90783					0.09117728468186215
TVKHPSKKF	9	Unmodified	_TVKHPSKKF_					0	0	0		ENST00000511604.5_1_3:131753576-131754217:-|nuORF	ENST00000511604.5_1_3:131753576-131754217:-|nuORF	ENST00000511604.5_1_3:131753576-131754217:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.319109	1070.62366	-0.11078	-5.9414E-05	-1.6422	-0.00088075	-1.753	-0.00094017	536.3180386735429	80.373	0.66946	80.167	79.63	80.3	-0.20632	-0.03754	-0.00082005	NaN	27.882	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123290			81701	15840	56944	57038							0.09117728468186215
TVKHPSKKF	9	Unmodified	_TVKHPSKKF_					0	0	0		ENST00000511604.5_1_3:131753576-131754217:-|nuORF	ENST00000511604.5_1_3:131753576-131754217:-|nuORF	ENST00000511604.5_1_3:131753576-131754217:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.319109	1070.62366	-0.55317	-0.00029668	-1.0529	-0.00056467	-1.606	-0.00086135	536.318251856082	80.227	1.0378	80.081	79.574	80.612	-0.146	-0.1242	-0.00018788	NaN	27.882	32	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198870			81702	15840	56944	57038							0.09117728468186215
TVKIPLIII	9	Unmodified	_TVKIPLIII_					0	0	0		ENST00000584588.5_1_17:38027782-38031519:+|nuORF	ENST00000584588.5_1_17:38027782-38031519:+|nuORF	ENST00000584588.5_1_17:38027782-38031519:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.3544006347656	2	505.354628	1008.6947	-0.76777	-0.000388	0.64308	0.00032498	-0.12469	-6.3014E-05	505.3548331176037	90.436	1.3949	90.311	89.889	91.284	-0.12512					86	33	5	0	0	0	0.11092	1	11093	11093		108.09	3.3409	1	4242500			81703	17209	56945	57039	90784	90784					0.19070428452994292
TVKIRIQTT	9	Unmodified	_TVKIRIQTT_					0	0	0			REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7725219726562	2	530.329673	1058.64479	-0.91723	-0.00048643	0.6869	0.00036428	-0.23033	-0.00012215	530.329827486989	28.772	0.69166	28.603	28.337	29.029	-0.16897					33	15	3	0	0	0	0.024495	1	1687	1687		26.693	0	1	361670	+		81704	29048	56946	57040	90785	90785					0.11781693777015789
TVKISNYGW	9	Unmodified	_TVKISNYGW_					0	0	0		nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	nc|ENSG00000116161|Q9HB71-3|CACYBP	nc|ENSG00000116161|Q9HB71-3|CACYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2789916992188	2	534.279649	1066.54475	-0.66217	-0.00035378	-0.061089	-3.2638E-05	-0.72326	-0.00038642	534.2794550474807	57.086	1.0091	56.919	56.597	57.606	-0.1672					66	26	3	0	0	0	0.26413	2	6217	6206;6217		80.455	20.161	1	4821100			81705	3527	56947	57041	90786;90787	90787					0.014134564432424668
TVKISNYGW	9	Unmodified	_TVKISNYGW_					0	0	0		nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	nc|ENSG00000116161|Q9HB71-3|CACYBP	nc|ENSG00000116161|Q9HB71-3|CACYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2789916992188	2	534.279649	1066.54475	-0.16265	-8.6899E-05	-0.46454	-0.0002482	-0.62719	-0.00033509	534.2792400850675	57.076	1.3338	56.873	56.404	57.738	-0.20208					88	35	4	0	0	0	0.15388	3	6215	6205;6215;6228		98.582	37.61	1	4779500			81706	3527	56947	57041	90788;90789;90790	90789					0.014134564432424668
TVKISNYGW	9	Unmodified	_TVKISNYGW_					0	0	0		nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	nc|ENSG00000116161|Q9HB71-3|CACYBP	nc|ENSG00000116161|Q9HB71-3|CACYBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.279052734375	2	534.279649	1066.54475	-0.50317	-0.00026883	-0.098275	-5.2506E-05	-0.60144	-0.00032134	534.2794550677515	57.162	1.1287	56.938	56.544	57.672	-0.2248					80	29	4	0	0	0	0.16539	2	6205	6205;6214		96.034	23.154	1	4364300			81707	3527	56947	57041	90791;90792	90791					0.014134564432424668
TVKKAARVI	9	Unmodified	_TVKKAARVI_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000559273.1_1_15:83208730-83209179:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2822265625	2	493.329476	984.6444	-0.91884	-0.00045329	1.1695	0.00057695	0.25067	0.00012366	493.32981358950525	25.338	0.30288	25.111	24.887	25.19	-0.22683					15	6	3	0	0	0	0.024523	1	1176	1176		37.159	8.0096	1	119020			81708	9163	56948	57042	90793	90793					0.15146318847837392
TVKKNWET	8	Unmodified	_TVKKNWET_					0	0	0			REV__ENST00000395290.6_1_11:47493253-47493394:-|nuORF	REV__ENST00000395290.6_1_11:47493253-47493394:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.79718017578125	2	503.271824	1004.5291	0.67599	0.00034021	1.7733	0.00089246	2.4493	0.0012327	503.27230121362027	19.548	0.54734	19.347	18.958	19.505	-0.2001					15	10	2	0	0	0	0.027866	1	436	436		14.137	0	1	22520	+		81709	31694	56949	57043	90794	90794					0.027011699261720423
TVKLANAKQT	10	Unmodified	_TVKLANAKQT_					0	0	0		nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG;PARG|p.N277Mfs*5|1|0.25|ENSG00000227345|chr10:49933618-49933618|T/-|frameshift_variant	nc|ENSG00000227345|Q86W56-3|PARG	nc|ENSG00000227345|Q86W56-3|PARG	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7581176757812	2	537.319306	1072.62406	-1.1054	-0.00059394	0.19362	0.00010404	-0.91175	-0.0004899	537.3194888819734	39.155	0.39523	38.991	38.795	39.19	-0.16458					18	10	2	0	0	0	0.03519	1	3328	3328		13.454	0	1	211620			81710	10671	56950	57044	90795	90795					0.09065103397369967
TVKLPVDKT	9	Unmodified	_TVKLPVDKT_					0	0	0		nc|ENSG00000130988|Q15493-2|RGN;ENSG00000130988|ENST00000397180|RGN	nc|ENSG00000130988|Q15493-2|RGN	nc|ENSG00000130988|Q15493-2|RGN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7947082519531	2	500.8055	999.596446	-0.072074	-3.6095E-05	0.25497	0.00012769	0.18289	9.1594E-05	500.8053865246773	49.824	0.39608	49.824	49.656	50.052	0					18	10	2	0	0	0	0.024447	1	5207	5207		25.574	9.9322	1	193550			81711	4482	56951	57045	90796	90796					0.09663200137117656
TVKLRLLI	8	Unmodified	_TVKLRLLI_					0	0	0		ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7777099609375	2	478.33677	954.658987	-0.92791	-0.00044385	-0.69414	-0.00033203	-1.6221	-0.00077589	478.33747761596993	27.183	0.14571	27.265	27.136	27.282	0.081293					5	3	2	0	0	0	0.027866	1	1414	1414		12.207	0	1	101990			81712	5234	56952	57046	90797	90797					0.17984390995979993
TVKRFQMY	8	Unmodified	_TVKRFQMY_					0	0	0			REV__nc|ENSG00000144191|Q16281-2|CNGA3	REV__nc|ENSG00000144191|Q16281-2|CNGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.7817993164062	2	536.784044	1071.55354	-0.44818	-0.00024058	-2.4501	-0.0013152	-2.8983	-0.0015557	536.782521387927	61.114	0.59724	60.908	60.62	61.217	-0.20599					27	14	2	0	0	0	0.87148	1	6830	6830		53.351	1.0523	1	1388800	+		81713	24315	56953	57047	90798	90798					0.020621068080799887
TVKRTLVIH	9	Unmodified	_TVKRTLVIH_					0	0	0		ENSG00000142556|ENST00000270649|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.773681640625	2	533.840208	1065.66586	-0.44589	-0.00023804	2.1449	0.001145	1.699	0.00090701	533.8415851471892	47.629	0.35582	47.531	47.349	47.705	-0.097553					14	9	2	0	0	0	0.024523	1	4702	4702		15.642	6.4589	1	117700			81714	5570	56954	57048	90799	90799					0.13565703876543012
TVKRYASLP	9	Unmodified	_TVKRYASLP_					0	0	0		nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-3|APC2	nc|ENSG00000115266|O95996-3|APC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.292236328125	2	517.803291	1033.59203	-0.57706	-0.0002988	-1.0579	-0.00054777	-1.6349	-0.00084658	517.8025189689378	32.298	0.59963	32.31	32.144	32.743	0.011799					31	15	3	0	0	0	0.024487	1	2194	2194		17.365	0	1	714930			81715	3424	56955	57049	90800	90800					0.07657735714224145
TVKTLAKEV	9	Unmodified	_TVKTLAKEV_					0	0	0		nc|ENSG00000129646|Q9H0J4-2|QRICH2;nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;ENST00000524722.1_2_17:74270319-74300575:-|nuORF	nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7821960449219	2	494.8055	987.596446	-0.23309	-0.00011534	-0.63869	-0.00031603	-0.87178	-0.00043136	494.8050571219936	46.348	0.36009	46.251	46.078	46.438	-0.096649					22	9	3	0	0	0	0.024457	1	4484	4484		37.159	0	1	383210			81716	4361	56956	57050	90801	90801					0.10215200137133706
TVKTLAKEV	9	Unmodified	_TVKTLAKEV_					0	0	0		nc|ENSG00000129646|Q9H0J4-2|QRICH2;nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;ENST00000524722.1_2_17:74270319-74300575:-|nuORF	nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.8055	987.596446	-0.075163	-3.7191E-05	-0.93068	-0.0004605	-1.0058	-0.0004977	494.8048297996099	46.644	0.4868	46.383	46.083	46.569	-0.26118	0.062831	-0.0001388	NaN	37.159	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348410			81717	4361	56956	57050							0.10215200137133706
TVKTLAKEV	9	Unmodified	_TVKTLAKEV_					0	0	0		nc|ENSG00000129646|Q9H0J4-2|QRICH2;nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;ENST00000524722.1_2_17:74270319-74300575:-|nuORF	nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.8055	987.596446	-0.63987	-0.00031661	-1.2717	-0.00062924	-1.9116	-0.00094585	494.80486049967936	46.519	0.48759	46.325	46.089	46.577	-0.19387	0.0055223	-0.00047627	NaN	37.159	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544310			81718	4361	56956	57050							0.10215200137133706
TVKVLPPVK	9	Unmodified	_TVKVLPPVK_					0	0	0			REV__nc|ENSG00000010704|Q30201-7|HFE	REV__nc|ENSG00000010704|Q30201-7|HFE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2525634765625	2	490.828778	979.643003	-0.046619	-2.2882E-05	-0.91473	-0.00044898	-0.96135	-0.00047186	490.8282075921813	42.815	0.76194	42.815	42.534	43.296	0					28	20	2	0	0	0	0.024477	1	4011	4011		9.7057	0	1	146410	+		81719	36168	56957	57051	90802	90802					0.15236684759088348
TVLAGRRPAG	10	Unmodified	_TVLAGRRPAG_					0	0	0			REV__ENST00000591087.1_1_19:46144824-46145007:+|nuORF	REV__ENST00000591087.1_1_19:46144824-46145007:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.77215576171875	2	499.298707	996.582862	-0.18758	-9.3656E-05	-0.435	-0.0002172	-0.62258	-0.00031085	499.29837976487397	24.578	0.25671	24.403	24.169	24.425	-0.17484					8	5	2	0	0	0	0.03519	1	1060	1060		26.693	0	1	32895	+		81720	35715	56958	57052	90803	90803					0.08443387148554393
TVLALAKPPS	10	Unmodified	_TVLALAKPPS_					0	0	0		nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7715759277344	2	498.808042	995.601532	-0.44477	-0.00022185	-2.2765	-0.0011355	-2.7213	-0.0013574	498.80714709123635	31.162	0.50223	30.977	30.743	31.245	-0.18503					14	12	2	0	0	0	0.03519	1	2080	2080		19.104	4.9664	1	121710			81721	1378	56959	57053	90804	90804					0.10355503999744542
TVLALAKPPS	10	Unmodified	_TVLALAKPPS_					0	0	0		nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	nc|ENSG00000068308|Q96G74-4|OTUD5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	498.808042	995.601532	-0.34102	-0.0001701	-3.2167	-0.0016045	-3.5578	-0.0017746	498.8064606328596	31.208	0.21564	31.22	31.041	31.257	0.011797	0.12183	-0.00027328	NaN	8.6937	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104750			81722	1378	56959	57053							0.10355503999744542
TVLAPGVVLI	10	Unmodified	_TVLAPGVVLI_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.T1566Nfs*3|1|0.16|ENSG00000173193|chr3:122718840-122718841|-/A|frameshift_variant;nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.N1099Ifs*17|1|0.2|ENSG00000173193|chr3:122703956-122703969|ATGGTAGCACATCT/-|frameshift_variant	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.2977294921875	2	491.320786	980.627018	-0.40839	-0.00020065	0.083331	4.0942E-05	-0.32506	-0.00015971	491.32067445381676	60.611	0.68357	60.357	60.014	60.697	-0.25373					41	16	4	0	0	0	0.03519	1	6758	6758		21.96	8.1846	1	790660			81723	18521	56960	57054	90805	90805					0.13592978522194699
TVLARKPK	8	Unmodified	_TVLARKPK_					0	0	0		nc|ENSG00000182287|P56377|AP1S2;ENSG00000182287|ENST00000672987|AP1S2;nc|ENSG00000182287|P56377-2|AP1S2	nc|ENSG00000182287|P56377|AP1S2	nc|ENSG00000182287|P56377|AP1S2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7682800292969	2	456.803094	911.591636	-0.81929	-0.00037425	0.7405	0.00033826	-0.078781	-3.5988E-05	456.8033242837561	36.02	1.5192	35.978	35.405	36.925	-0.042454					64	40	2	0	0	0	0.027866	1	2939	2939		10.866	0	1	602630			81724	9122	56961	57055	90806	90806					0.1323036078503037
TVLARLKY	8	Unmodified	_TVLARLKY_					0	0	0		ENST00000405333.5_1_2:10584278-10584637:-|nuORF	ENST00000405333.5_1_2:10584278-10584637:-|nuORF	ENST00000405333.5_1_2:10584278-10584637:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.27447509765625	2	482.302927	962.591301	-0.58152	-0.00028047	0.71243	0.00034361	0.1309	6.3135E-05	482.30318844596314	64.52	0.97118	64.258	63.864	64.835	-0.2626					60	25	3	0	0	0	0.027866	1	7622	7622		38.806	3.1879	1	970040			81725	13714	56962	57056	90807	90807					0.10850941065177722
TVLAWMFF	8	Unmodified	_TVLAWMFF_					0	0	0		ENST00000572703.2_1_19:52207497-52208373:+|nuORF;ENST00000576975.1_1_19:52207252-52208373:+|nuORF;ENSG00000182310|ENST00000637797|SPACA6	ENST00000572703.2_1_19:52207497-52208373:+|nuORF	ENST00000572703.2_1_19:52207497-52208373:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8234558105469	2	507.759507	1013.50446	-0.72475	-0.000368	0.78813	0.00040018	0.063373	3.2178E-05	507.75990825520245	81.313	0.3679	81.337	81.167	81.534	0.023911					13	8	2	0	0	0	0.027866	1	10034	10034		31.579	3.3246	1	142040			81726	9124	56963	57057	90808	90808					-0.0017518148089266106
TVLDLAVVL	9	Unmodified	_TVLDLAVVL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75537109375	2	471.797143	941.579734	-0.36035	-0.00017001	-1.1656	-0.00054995	-1.526	-0.00071996	471.7962477628467	39.611	0.45891	39.634	39.349	39.808	0.023727					20	12	2	0	0	0	0.024436	1	3383	3383		38.806	8.3025	1	99364			81727	7589	56964	57058	90809	90809					0.10660699251184269
TVLDMRDIL	9	Oxidation (M)	_TVLDM(Oxidation (M))RDIL_		TVLDM(1)RDIL		TVLDM(66)RDIL	0	0	1		ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.2898559570312	2	546.291899	1090.56925	-0.70276	-0.00038391	-2.325	-0.0012701	-3.0277	-0.001654	546.2905855380187	97.241	2.1195	97.241	96.748	98.867	0					97	48	4	0	0	0	0.39228	1	12444	12444		66.429	7.6473	1	1377700			81728	6474	56965	57059	90810	90810		269			0.027583485344621295
TVLDSYEDVN	10	Unmodified	_TVLDSYEDVN_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.2445068359375	2	577.764226	1153.5139	-1.9163	-0.0011072	1.9853	0.0011471	0.069054	3.9897E-05	578.2682506668492	65.328	0.16293	65.126	65.063	65.226	-0.20254					5	3	2	0	0	0	0.03519	1	7476	7476		42.864	10.052	1	42235	+		81729	24032	56966	57060	90811	90811					-0.05671786452330707
TVLDSYEDVN	10	Unmodified	_TVLDSYEDVN_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.764226	1153.5139	-0.85634	-0.00049476	-4.622	-0.0026704	-5.4783	-0.0031652	577.7616510352713	64.836	0.54916	64.873	64.672	65.221	0.037384	-0.12627	-0.0020406	NaN	41.427	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107480	+		81730	24032	56966	57060							-0.05671786452330707
TVLECLVKN	9	Unmodified	_TVLECLVKN_					0	0	0		ENST00000263377.6_1_19:15383879-15391216:-|nuORF	ENST00000263377.6_1_19:15383879-15391216:-|nuORF	ENST00000263377.6_1_19:15383879-15391216:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.80889892578125	2	509.78371	1017.55287	-1.0658	-0.00054333	0.54311	0.00027687	-0.5227	-0.00026646	509.78385151548645	60.891	1.6452	60.715	60.239	61.884	-0.1761					65	40	2	0	0	0	0.024323	1	6863	6863		44.117	14.967	1	917140			81731	11531	56967	57061	90812	90812					0.04479267368355977
TVLEGETISC	10	Unmodified	_TVLEGETISC_					0	0	0		ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	ENSG00000157933|ENST00000378536|SKI	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.8056030273438	2	526.25244	1050.49033	-0.28927	-0.00015223	1.515	0.00079728	1.2258	0.00064506	526.2530278419712	43.022	0.26276	42.909	42.735	42.997	-0.11253					10	6	2	0	0	0	0.03519	1	3900	3900		27.882	0	1	249800			81732	6633	56968	57062	90813	90813					-0.03289923490478941
TVLEKVYEL	9	Unmodified	_TVLEKVYEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.3104858398438	2	547.310615	1092.60668	-1.1906	-0.00065164	0.5643	0.00030885	-0.62632	-0.00034279	547.3107880648844	62.832	1.1771	62.832	62.489	63.666	0					71	30	4	0	0	0	0.016542	3	7317	7317;7326;7339		154.12	60.923	1	5085300			81733	10867	56969	57063	90814;90815;90816	90814					0.0640776307170654
TVLEKVYEL	9	Unmodified	_TVLEKVYEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.3107299804688	2	547.310615	1092.60668	-1.1172	-0.00061144	0.50433	0.00027603	-0.61284	-0.00033541	547.3107628549541	63.042	0.96417	62.803	62.492	63.457	-0.23926					66	24	4	0	0	0	0.025498	3	7315	7315;7326;7339		145.16	39.92	1	4864800			81734	10867	56969	57063	90817;90818;90819	90817					0.0640776307170654
TVLEKVYEL	9	Unmodified	_TVLEKVYEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.310791015625	2	547.310615	1092.60668	-0.2837	-0.00015527	-0.35815	-0.00019602	-0.64184	-0.00035129	547.3102787103097	62.769	0.9622	62.823	62.557	63.519	0.054104					69	24	4	0	0	0	0.014475	3	7236	7227;7236;7248		185.72	92.523	1	4890800			81735	10867	56969	57063	90820;90821;90822	90821					0.0640776307170654
TVLEKVYEL	9	Unmodified	_TVLEKVYEL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.310615	1092.60668	-0.17242	-9.4366E-05	2.0826	0.0011399	1.9102	0.0010455	547.3122556049293	63.099	0.41088	62.878	62.691	63.102	-0.22097	0.028332	0.0019413	NaN	185.72	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237020			81736	10867	56969	57063							0.0640776307170654
TVLEQVLPI	9	Unmodified	_TVLEQVLPI_					0	0	0		nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.3084411621094	2	506.307875	1010.6012	-0.1596	-8.0806E-05	0.31679	0.00016039	0.15719	7.9586E-05	506.30788597472065	87.682	0.88621	87.503	87.196	88.082	-0.17875					51	21	4	0	0	0	0.30449	2	10679	10667;10679		75.043	11.737	1	737570			81737	4568	56970	57064	90823;90824	90824					0.09632084279917308
TVLGEPLI	8	Unmodified	_TVLGEPLI_					0	0	0		nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS;ENST00000550033.5_1_12:53701834-53703447:-|nuORF	nc|ENSG00000094914|Q9NRG9-2|AAAS	nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	421.2545471191406	2	421.255111	840.49567	0.65952	0.00027783	-3.5108	-0.001479	-2.8513	-0.0012011	421.2534826375198	83.667	1.0631	83.498	83.119	84.182	-0.16915					54	24	3	0	0	0	1.0239	1	10115	10115		33.516	0	1	627860			81738	2010	56971	57065	90825	90825					0.0690416815430126
TVLGIPQKP	9	Unmodified	_TVLGIPQKP_					0	0	0		CADM3|p.H243Pfs*4|1|0.14|ENSG00000162706|chr1:159196395-159196396|-/C|frameshift_variant;nc|ENSG00000162706|Q8N126-3|CADM3;ENSG00000162706|ENST00000368125|CADM3;nc|ENSG00000162706|Q8N126-2|CADM3	CADM3|p.H243Pfs*4|1|0.14|ENSG00000162706|chr1:159196395-159196396|-/C|frameshift_variant	CADM3|p.H243Pfs*4|1|0.14|ENSG00000162706|chr1:159196395-159196396|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.267578125	2	476.794935	951.575317	-0.36246	-0.00017282	0.017906	8.5373E-06	-0.34456	-0.00016428	476.79485709941406	31.845	0.29264	31.687	31.569	31.861	-0.15772					10	6	2	0	0	0	0.024495	1	2127	2127		26.693	19.5	1	37000			81739	207	56972	57066	90826	90826					0.09759234828277386
TVLGPIKHIF	10	Unmodified	_TVLGPIKHIF_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.7963256835938	2	562.844959	1123.67537	-0.31396	-0.00017671	-3.8221	-0.0021512	-4.1361	-0.002328	562.8425050102758	37.275	0.30055	37.307	37.149	37.45	0.032269					13	7	2	0	0	0	0.03519	1	2966	2966		40.778	0.20554	1	80458	+		81740	25663	56973	57067	90827	90827					0.11847472162071426
TVLGPIKHIF	10	Unmodified	_TVLGPIKHIF_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	562.844959	1123.67537	0.77779	0.00043778	-4.7338	-0.0026644	-3.956	-0.0022266	562.842241185613	37.266	0.40781	37.266	37.042	37.45	0	0.054963	-0.00027266	NaN	32.812	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132120	+		81741	25663	56973	57067							0.11847472162071426
TVLGPIKHIF	10	Unmodified	_TVLGPIKHIF_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	562.844959	1123.67537	0.072327	4.0709E-05	-4.2602	-0.0023978	-4.1878	-0.0023571	562.8426283606783	37.123	0.29475	37.06	36.904	37.198	-0.063389	-0.15118	0.00026047	NaN	32.812	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113460	+		81742	25663	56973	57067							0.11847472162071426
TVLHSSLY	8	Unmodified	_TVLHSSLY_					0	0	0		ENST00000585089.5_1_17:26659306-26662455:-|nuORF	ENST00000585089.5_1_17:26659306-26662455:-|nuORF	ENST00000585089.5_1_17:26659306-26662455:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2585754394531	2	460.247818	918.481082	-1.2889	-0.00059323	2.9578	0.0013613	1.6689	0.00076811	460.24871496875375	37.854	0.09967	37.854	37.769	37.869	0					4	2	2	0	0	0	0.027866	1	3122	3122		83.287	40.891	1	118230			81743	17219	56974	57068	90828	90828					0.018580960061512997
TVLHSSLY	8	Unmodified	_TVLHSSLY_					0	0	0		ENST00000585089.5_1_17:26659306-26662455:-|nuORF	ENST00000585089.5_1_17:26659306-26662455:-|nuORF	ENST00000585089.5_1_17:26659306-26662455:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.247818	918.481082	0.34725	0.00015982	4.043	0.0018608	4.3902	0.0020206	460.24953154573086	37.549	0.22315	37.581	37.377	37.6	0.032269	-0.043947	0.00022174	NaN	83.287	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71446			81744	17219	56974	57068							0.018580960061512997
TVLHSSLY	8	Unmodified	_TVLHSSLY_					0	0	0		ENST00000585089.5_1_17:26659306-26662455:-|nuORF	ENST00000585089.5_1_17:26659306-26662455:-|nuORF	ENST00000585089.5_1_17:26659306-26662455:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	460.247818	918.481082	-0.90936	-0.00041853	3.4167	0.0015725	2.5073	0.001154	460.24845909221034	37.657	0.31636	37.44	37.185	37.501	-0.217	-0.18489	-0.00035477	NaN	83.287	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42349			81745	17219	56974	57068							0.018580960061512997
TVLHTHQS	8	Unmodified	_TVLHTHQS_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.R628Pfs*12|1|0.57|ENSG00000147234|chrX:107597659-107597660|-/C|frameshift_variant	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.2849426269531	2	461.740691	921.466829	1.6652	0.00076887	-0.53583	-0.00024742	1.1293	0.00052146	461.7404208898548	23.325	0.44333	23.134	22.804	23.248	-0.19117					14	9	2	0	0	0	0.027866	1	880	880		26.796	0	1	93972			81746	5949	56975	57069	90829	90829					0.002954435778519837
TVLIILSNG	9	Unmodified	_TVLIILSNG_					0	0	0			REV__ENSG00000166363|ENST00000299454|OR10A5	REV__ENSG00000166363|ENST00000299454|OR10A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.740234375	2	465.286943	928.559333	0.82833	0.00038541	-0.442	-0.00020565	0.38634	0.00017976	465.2864759881883	52.701	1.0817	52.793	52.321	53.403	0.091938					75	28	4	0	0	0	0.024209	1	5575	5575		47.657	3.2801	1	1089800	+		81747	26007	56976	57070	90830	90830					0.09219528591370363
TVLIILSNG	9	Unmodified	_TVLIILSNG_					0	0	0			REV__ENSG00000166363|ENST00000299454|OR10A5	REV__ENSG00000166363|ENST00000299454|OR10A5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	465.286943	928.559333	-0.54479	-0.00025349	0.64686	0.00030097	0.10206	4.7489E-05	465.28714001612656	52.844	0.87574	52.844	52.391	53.267	0	0.052174	0.00030891	NaN	47.657	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	919480	+		81748	26007	56976	57070							0.09219528591370363
TVLIKRNT	8	Unmodified	_TVLIKRNT_					0	0	0		ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.25677490234375	2	472.798009	943.581465	2.3071	0.0010908	2.2576	0.0010674	4.5647	0.0021582	472.79882279386567	74.426	0.62073	74.426	74.215	74.835	0					19	14	2	0	0	0	0.027866	1	9134	9134		11.511	0	1	121550			81749	3008	56977	57071	90831	90831					0.10741753059789971
TVLIKRNT	8	Unmodified	_TVLIKRNT_					0	0	0		ENST00000532091.1_1_11:122929724-122930952:-|nuORF;HSPA8|p.G470Rfs*6|1|0.07|ENSG00000109971|chr11:123058746-123058747|-/T|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENST00000532091.1_1_11:122929724-122930952:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.798009	943.581465	-0.10956	-5.1798E-05	5.278	0.0024954	5.1684	0.0024436	472.8000117470202	74.576	0.54265	74.586	74.312	74.854	0.0096512	0.09913	0.0014393	NaN	17.365	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173300			81750	3008	56977	57071							0.10741753059789971
TVLIQVIDV	9	Unmodified	_TVLIQVIDV_					0	0	0		ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120322|ENST00000239444|PCDHB8	ENSG00000187372|ENST00000341948|PCDHB13	ENSG00000187372|ENST00000341948|PCDHB13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.32421875	2	500.307875	998.601197	0.64923	0.00032481	0.19286	9.6491E-05	0.84209	0.00042131	500.307759005436	63.466	0.90655	63.466	62.938	63.845	0					37	24	2	0	0	0	0.023417	1	7452	7452		90.777	8.4716	1	1366800			81751	3806	56978	57072	90832	90832					0.10184084279899253
TVLIQVIDV	9	Unmodified	_TVLIQVIDV_					0	0	0		ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120322|ENST00000239444|PCDHB8	ENSG00000187372|ENST00000341948|PCDHB13	ENSG00000187372|ENST00000341948|PCDHB13	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	500.307875	998.601197	0.03596	1.7991E-05	1.0824	0.00054153	1.1183	0.00055952	500.30817184719444	63.753	0.55148	63.495	63.162	63.713	-0.25824	0.014505	0.00071202	NaN	90.777	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85679			81752	3806	56978	57072							0.10184084279899253
TVLKLGANGVS	11	Unmodified	_TVLKLGANGVS_					0	0	0			REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7713623046875	2	529.813856	1057.61316	-0.50064	-0.00026525	2.6134	0.0013846	2.1128	0.0011194	529.8143858891989	65.208	0.48718	64.956	64.782	65.269	-0.25211					23	11	3	0	0	0	0.024771	1	7411	7411		65.157	17.5	1	659320	+		81753	33762	56979	57073	90833	90833					0.0866570102307378
TVLKLITGAP	10	Unmodified	_TVLKLITGAP_					0	0	0			REV__ENSG00000172534|ENST00000310441|HCFC1	REV__ENSG00000172534|ENST00000310441|HCFC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.30303955078125	2	506.823692	1011.63283	-0.1911	-9.6852E-05	-0.2547	-0.00012909	-0.4458	-0.00022594	506.8233864029948	56.947	0.50443	57.042	56.815	57.32	0.095306					22	13	2	0	0	0	0.03519	1	6293	6293		44.377	16.495	1	213120	+		81754	26683	56980	57074	90834	90834					0.1274807703384795
TVLKNLMSL	9	Unmodified	_TVLKNLMSL_					0	0	0		nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;COL14A1|p.P852Hfs*5|1|0.28|ENSG00000187955|chr8:120247683-120247683|C/-|frameshift_variant	nc|ENSG00000187955|Q05707-3|COL14A1	nc|ENSG00000187955|Q05707-3|COL14A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8026123046875	2	509.801903	1017.58925	0.74352	0.00037905	2.1983	0.0011207	2.9418	0.0014997	509.80291687751657	98.304	1.8221	98.168	97.854	99.676	-0.13625					55	44	2	0	0	0	0.96906	1	12154	12154		26.693	3.6504	1	682410			81755	9677	56981	57075	90835	90835					0.08116144265068215
TVLLMDLL	8	Unmodified	_TVLLMDLL_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6	REV__ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2585754394531	2	459.272447	916.530341	-1.1651	-0.00053511	3.5289	0.0016207	2.3637	0.0010856	459.2742488011332	37.967	0.36739	37.967	37.735	38.102	0					14	10	2	0	0	0	0.027866	1	3122	3122		25.45	0	1	295680	+		81756	28330	56982	57076	90836	90836					0.06873667970739916
TVLNIPHPS	9	Unmodified	_TVLNIPHPS_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.28472900390625	2	489.274367	976.53418	0.26272	0.00012854	0.56743	0.00027763	0.83015	0.00040617	489.2747527080508	55.139	0.42233	55.139	54.794	55.216	0					25	11	3	0	0	0	0.024292	1	6045	6045		40.778	1.972	1	686470			81757	10317	56983	57077	90837	90837					0.04497473788796924
TVLNIPHPS	9	Unmodified	_TVLNIPHPS_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.274367	976.53418	-0.049979	-2.4453E-05	2.24	0.001096	2.19	0.0010715	489.27505281475777	55.257	0.27984	55.026	54.785	55.065	-0.23087	-0.0061318	0.0012347	NaN	32.812	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139840			81758	10317	56983	57077							0.04497473788796924
TVLNIPHPS	9	Unmodified	_TVLNIPHPS_					0	0	0		ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2	ENSG00000204256|ENST00000374825|BRD2	ENSG00000204256|ENST00000374825|BRD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.274367	976.53418	0.43402	0.00021235	1.7922	0.00087689	2.2262	0.0010892	489.27490225353506	55.189	0.43171	54.983	54.648	55.08	-0.20613	-0.049073	0.00079651	NaN	32.812	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188330			81759	10317	56983	57077							0.04497473788796924
TVLNTLVAP	9	Unmodified	_TVLNTLVAP_					0	0	0		OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2791442871094	2	464.279118	926.543683	-0.6087	-0.00028261	0.77626	0.0003604	0.16756	7.7794E-05	464.27940919538327	80.996	1.6108	80.996	80.626	82.237	0					75	39	3	0	0	0	0.19099	3	10082	10074;10082;10094		90.37	8.1293	1	3227100			81760	18925	56984	57078	90838;90839;90840	90839					0.07747242074333371
TVLNTLVAP	9	Unmodified	_TVLNTLVAP_					0	0	0		OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.27880859375	2	464.279118	926.543683	-0.76344	-0.00035445	1.173	0.00054462	0.40961	0.00019017	464.27964296126913	81.18	1.7865	81.049	80.195	81.982	-0.13075					76	43	3	0	0	0	0.077175	3	10057	10057;10067;10079		118.74	33.828	1	3145900			81761	18925	56984	57078	90841;90842;90843	90841					0.07747242074333371
TVLNTLVAP	9	Unmodified	_TVLNTLVAP_					0	0	0		OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	2	464.279118	926.543683	-0.19628	-9.1128E-05	0.3071	0.00014258	0.11082	5.1453E-05	464.27917818405325	81.014	1.324	81.038	80.656	81.98	0.023903					66	32	3	0	0	0	0.1158	2	9997	9997;10019		107.01	16.638	1	3248100			81762	18925	56984	57078	90844;90845	90844					0.07747242074333371
TVLNTLVAP	9	Unmodified	_TVLNTLVAP_					0	0	0		OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.279118	926.543683	0.21299	9.8886E-05	0.96883	0.00044981	1.1818	0.00054869	464.27970078269647	81.065	1.2208	80.827	80.082	81.303	-0.23784	-0.11513	0.00037098	NaN	118.74	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	711650			81763	18925	56984	57078							0.07747242074333371
TVLNTLVAP	9	Unmodified	_TVLNTLVAP_					0	0	0		OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.279118	926.543683	0.29541	0.00013715	0.66453	0.00030853	0.95994	0.00044568	464.27961652816435	81.059	1.7513	80.853	80.467	82.218	-0.20632	-0.089432	8.8417E-05	NaN	118.74	60	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674820			81764	18925	56984	57078							0.07747242074333371
TVLNTLVAP	9	Unmodified	_TVLNTLVAP_					0	0	0		OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	OR6C70|p.S278L|1|0.07|ENSG00000184954|chr12:55469306-55469306|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.279118	926.543683	-0.30131	-0.00013989	0.34251	0.00015902	0.041199	1.9128E-05	464.2791738346238	81.032	0.65646	80.89	80.536	81.192	-0.14248	-0.052154	-0.0002106	NaN	118.74	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563820			81765	18925	56984	57078							0.07747242074333371
TVLPCDHS	8	Unmodified	_TVLPCDHS_					0	0	0			REV__ENST00000479690.1_1_7:5269116-5270575:+|nuORF	REV__ENST00000479690.1_1_7:5269116-5270575:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.2481994628906	2	436.202553	870.390553	-0.16782	-7.3204E-05	-2.6011	-0.0011346	-2.7689	-0.0012078	436.20147676597645	34.231	0.61652	34.024	33.75	34.366	-0.20696					23	15	2	0	0	0	0.027866	1	2499	2499		50.025	0	1	193250	+		81766	25161	56985	57079	90846	90846					-0.049826963137888924
TVLPGEIQGW	10	Unmodified	_TVLPGEIQGW_					0	0	0		ENST00000574928.5_1_16:3185143-3187740:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2923583984375	2	550.292756	1098.57096	0.19109	0.00010515	0.029376	1.6166E-05	0.22046	0.00012132	550.2927412285214	79.009	0.97002	78.754	78.384	79.354	-0.25471					50	22	3	0	0	0	0.37509	1	9437	9437		101.25	53.595	1	923820			81767	17090	56986	57080	90847	90847					0.025617256147143053
TVLPGEIQGW	10	Unmodified	_TVLPGEIQGW_					0	0	0		ENST00000574928.5_1_16:3185143-3187740:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	550.2923583984375	2	550.292756	1098.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.974	1	78.743	78.243	79.243	-0.23141								0	0	0	0.16915	1	9438	9438		98.629	21.312	1				81768	17090	56986	57080	90848	90848					0.025617256147143053
TVLPGEIQGW	10	Unmodified	_TVLPGEIQGW_					0	0	0		ENST00000574928.5_1_16:3185143-3187740:+|nuORF;ENSG00000085644|ENST00000396878|ZNF213	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	ENST00000574928.5_1_16:3185143-3187740:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.292236328125	2	550.292756	1098.57096	0.02041	1.1231E-05	0.64371	0.00035423	0.66412	0.00036546	550.2928714538789	78.848	1.2712	78.692	78.128	79.399	-0.15591					61	29	3	0	0	0	0.47897	1	9406	9406		90.601	27.067	1	949670			81769	17090	56986	57080	90849	90849					0.025617256147143053
TVLPGRSPK	9	Unmodified	_TVLPGRSPK_					0	0	0			REV__ENSG00000139567|ENST00000388922|ACVRL1	REV__ENSG00000139567|ENST00000388922|ACVRL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.743408203125	2	477.790184	953.565815	-0.47534	-0.00022711	0.39123	0.00018692	-0.084113	-4.0188E-05	477.7902165376228	30.318	0.65943	30.318	30.057	30.717	0					38	15	4	0	0	0	0.024025	1	1907	1907		52.937	2.9122	1	761510	+		81770	23947	56987	57081	90850	90850					0.08717466542748298
TVLPGRSPK	9	Unmodified	_TVLPGRSPK_					0	0	0			REV__ENSG00000139567|ENST00000388922|ACVRL1	REV__ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	477.790184	953.565815	-0.94085	-0.00044953	0.66237	0.00031648	-0.27848	-0.00013306	477.7904062499925	30.022	0.70562	30.098	29.839	30.545	0.075436	-0.13275	0.00027483	NaN	52.937	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763130	+		81771	23947	56987	57081							0.08717466542748298
TVLPKQQAP	9	Unmodified	_TVLPKQQAP_					0	0	0		nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2	nc|ENSG00000066468|P21802-17|FGFR2	nc|ENSG00000066468|P21802-17|FGFR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.3003234863281	2	491.290017	980.565481	0.11811	5.8025E-05	1.0603	0.00052091	1.1784	0.00057893	491.2904131232211	66.501	0.87673	66.501	66.288	67.165	0					34	25	2	0	0	0	0.024292	1	7939	7939		40.778	9.2484	1	1488000			81772	18065	56988	57082	90851	90851					0.07442046822893644
TVLPPRHTP	9	Unmodified	_TVLPPRHTP_					0	0	0			REV__nc|ENSG00000188152|Q5VZR2-2|NUTM2G	REV__nc|ENSG00000188152|Q5VZR2-2|NUTM2G	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.3021240234375	2	509.295633	1016.57671	0.55645	0.0002834	1.2049	0.00061365	1.7613	0.00089704	509.7987045790473	54.928	0.25681	54.722	54.538	54.794	-0.20613					9	6	2	0	0	0	0.024381	1	5827	5827		21.96	0	1	55566	+		81773	28011	56989	57083	90852	90852					0.06908868917037125
TVLPPRHTP	9	Unmodified	_TVLPPRHTP_					0	0	0			REV__nc|ENSG00000188152|Q5VZR2-2|NUTM2G	REV__nc|ENSG00000188152|Q5VZR2-2|NUTM2G	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.295633	1016.57671	0.016712	8.5115E-06	0.30343	0.00015454	0.32014	0.00016305	509.29239761435787	55.112	0.38473	55.112	54.831	55.216	0	0.26283	-0.00055181	NaN	51.335	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154970	+		81774	28011	56989	57083							0.06908868917037125
TVLQAPAVQY	10	Unmodified	_TVLQAPAVQY_					0	0	0			REV__ENSG00000164674|ENST00000611299|SYTL3	REV__ENSG00000164674|ENST00000611299|SYTL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.816650390625	2	545.300581	1088.58661	-0.74861	-0.00040822	3.1007	0.0016908	2.352	0.0012826	545.3021544842178	67.368	1.067	67.13	66.72	67.787	-0.23814					38	25	2	0	0	0	0.03519	1	7770	7770		47.657	18.508	1	270290	+		81775	25789	56990	57084	90853	90853					0.0458601213174461
TVLQCHSLN	9	Unmodified	_TVLQCHSLN_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2923889160156	2	507.755484	1013.49641	0.25946	0.00013174	-2.2298	-0.0011322	-1.9703	-0.0010004	508.256260051803	52.46	0.35917	52.313	52.17	52.53	-0.14723					14	8	2	0	0	0	0.024523	1	5578	5578		29.15	7.1897	1	133150	+		81776	20647	56991	57085	90854	90854					-0.009793604683181911
TVLQCQGPL	9	Unmodified	_TVLQCQGPL_					0	0	0			REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.754638671875	2	479.754953	957.495352	0.01633	7.8343E-06	0.12341	5.9208E-05	0.13974	6.7042E-05	479.7548464399689	48.336	1.1905	48.336	47.779	48.969	0					47	34	2	0	0	0	0.024354	1	4858	4858		38.806	0	1	537330	+		81777	20498	56992	57086	90855	90855					0.014904251627854137
TVLQCQGPL	9	Unmodified	_TVLQCQGPL_					0	0	0			REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.754953	957.495352	-1.0943	-0.00052498	-0.26948	-0.00012929	-1.3638	-0.00065427	479.7548674269098	48.395	0.80372	48.119	47.701	48.505	-0.27598	-0.15858	-0.00042027	NaN	23.042	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105940	+		81778	20498	56992	57086							0.014904251627854137
TVLRNLDL	8	Unmodified	_TVLRNLDL_					0	0	0			REV__ENST00000263511.8_1_1:16802353-16802998:-|nuORF	REV__ENST00000263511.8_1_1:16802353-16802998:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2927551269531	2	472.282192	942.549831	0.64472	0.00030449	-0.69353	-0.00032754	-0.048813	-2.3054E-05	472.28154224123017	49.705	0.68536	49.705	49.399	50.084	0					39	18	4	0	0	0	0.027866	1	5216	5216		27.882	0	1	684300	+		81779	29691	56993	57087	90856	90856					0.0762576030585933
TVLRQADSQV	10	Unmodified	_TVLRQADSQV_					0	0	0		ENSG00000163599|ENST00000648405|CTLA4;nc|ENSG00000163599|P16410-5|CTLA4	ENSG00000163599|ENST00000648405|CTLA4	ENSG00000163599|ENST00000648405|CTLA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8037109375	2	558.80402	1115.59349	-0.43841	-0.00024498	-0.21056	-0.00011766	-0.64897	-0.00036264	558.8038714821063	49.007	1.0114	48.825	48.408	49.419	-0.18206					76	26	5	0	0	0	0.98754	1	4882	4882		47.657	0	1	7281600			81780	7111	56994	57088	90857	90857					0.040313250123290345
TVLRSIGKTG	10	Unmodified	_TVLRSIGKTG_					0	0	0			REV__ENST00000482189.1_1_12:100402990-100403251:-|nuORF	REV__ENST00000482189.1_1_12:100402990-100403251:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.3131713867188	2	516.314023	1030.61349	-0.060536	-3.1256E-05	-1.0547	-0.00054456	-1.1152	-0.00057582	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	1.1266	1	12091	12091		29.17	3.596	1	29455000	+		81781	33479	56995	57089	90858	90858					0.09941120742928433
TVLRTIAEP	9	Unmodified	_TVLRTIAEP_					0	0	0			REV__nc|ENSG00000173039|Q04206-2|RELA	REV__nc|ENSG00000173039|Q04206-2|RELA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8082275390625	2	500.295299	998.576045	-0.12203	-6.1052E-05	-0.70025	-0.00035033	-0.82228	-0.00041138	500.2946641279341	42.5	0.42242	42.368	42.216	42.638	-0.13219					16	11	2	0	0	0	0.024209	1	3886	3886		56.721	14.325	1	177800	+		81782	26732	56996	57090	90859	90859					0.07670029477333173
TVLSGLLNGR	10	Unmodified	_TVLSGLLNGR_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3075561523438	2	515.306198	1028.59784	0.37565	0.00019358	3.5119	0.0018097	3.8875	0.0020033	515.3078653292357	87.383	1.0616	87.404	87.051	88.113	0.021263					90	25	4	0	0	0	0.98527	1	11005	11005		47.96	1.9873	1	1372100	+		81783	27972	56997	57091	90860	90860					0.08468834225891442
TVLTISGLSI	10	Unmodified	_TVLTISGLSI_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.79718017578125	2	502.305332	1002.59611	0.73244	0.00036791	0.014119	7.0923E-06	0.74655	0.000375	502.30520781471427	19.571	0.49673	19.371	19.156	19.653	-0.2001					12	9	2	0	0	0	0.03519	1	436	436		14.137	0	1	200700	+		81784	29234	56998	57092	90861	90861					0.09491780417295104
TVLTNYTL	8	Unmodified	_TVLTNYTL_					0	0	0			REV__ENSG00000188394|ENST00000616002|GPR21	REV__ENSG00000188394|ENST00000616002|GPR21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.7550964355469	2	462.755475	923.496398	-0.41136	-0.00019036	0.41898	0.00019388	0.0076161	3.5244E-06	462.75549687801646	73.537	0.62955	73.273	72.977	73.607	-0.26479					43	15	4	0	0	0	0.42327	1	8667	8667		94.006	3.2298	1	1397400	+		81785	28036	56999	57093	90862	90862					0.03158962803343002
TVLVFLNLI	9	Unmodified	_TVLVFLNLI_					0	0	0		nc|ENSG00000140391|O60637-3|TSPAN3;ENSG00000140391|ENST00000267970|TSPAN3;nc|ENSG00000140391|O60637-2|TSPAN3;ENST00000558394.5_1_15:77348162-77363449:-|nuORF;ENST00000560514.1_1_15:77348372-77363449:-|nuORF	nc|ENSG00000140391|O60637-3|TSPAN3	nc|ENSG00000140391|O60637-3|TSPAN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2401123046875	2	516.328611	1030.64267	-0.19106	-9.8651E-05	0.11557	5.967E-05	-0.075496	-3.8981E-05	516.3285322089099	78.573	0.68875	78.319	77.912	78.6	-0.25471					23	15	2	0	0	0	0.024541	1	9400	9400		24.203	0	1	103720			81786	5406	57000	57094	90863	90863					0.1285726503922433
TVLYLQVAR	9	Unmodified	_TVLYLQVAR_					0	0	0		ENSG00000168306|ENST00000302819|ACOX2;ENST00000467738.1_1_3:58490953-58512473:-|nuORF	ENSG00000168306|ENST00000302819|ACOX2	ENSG00000168306|ENST00000302819|ACOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7987060546875	2	531.818941	1061.62333	-0.35753	-0.00019014	-3.594	-0.0019114	-3.9516	-0.0021015	531.8171725070692	99.857	0.84225	99.867	99.223	100.07	0.010117					39	20	3	0	0	0	0.024527	1	12654	12654		24.519	1.9395	1	906920			81787	7810	57001	57095	90864	90864					0.09498308748311501
TVLYMSLFLG	10	Unmodified	_TVLYMSLFLG_					0	0	0			REV__nc|ENSG00000172148|Q8NGA2|OR7A2P;REV__ENSG00000127529|ENST00000248072|OR7C2;REV__ENSG00000127530|ENST00000641666|OR7C1;REV__ENSG00000185385|ENST00000641113|OR7A17;REV__ENSG00000188000|ENST00000641288|OR7D2	REV__ENSG00000127529|ENST00000248072|OR7C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	572.308837890625	2	572.309561	1142.60457	-0.48405	-0.00027703	-2.5545	-0.001462	-3.0386	-0.001739	572.3078343436534	105.18	1.775	105.18	104.07	105.85	0					75	49	3	0	0	0	0.57825	1	13496	13496		79.451	0	1	467390	+		81788	22937;36939;22938;27759;27999	57002	57096	90865	90865					0.03897011062258571
TVMARQGRA	9	Unmodified	_TVMARQGRA_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.26763916015625	2	495.269093	988.523633	0.60499	0.00029964	1.7996	0.0008913	2.4046	0.0011909	495.2699086369687	39.752	0.63945	39.752	39.459	40.099	0					32	17	2	0	0	0	0.024436	1	3395	3395		10.866	0	1	2072600	+		81789	19816	57003	57097	90866	90866					0.02891167862730981
TVMEVKLNL	9	Oxidation (M)	_TVM(Oxidation (M))EVKLNL_		TVM(1)EVKLNL		TVM(55)EVKLNL	0	0	1		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.31591796875	2	531.796817	1061.57908	0.60884	0.00032378	2.4017	0.0012772	3.0106	0.001601	531.7979445954502	97.484	0.62378	97.484	97.191	97.814	-0.00019073					19	13	2	0	0	0	0.023239	1	12329	12329		54.776	13.998	1	85864			81790	5036	57004	57098	90867	90867		207			0.05075536539811765
TVMIRKLL	8	Oxidation (M)	_TVM(Oxidation (M))IRKLL_		TVM(1)IRKLL		TVM(80)IRKLL	0	0	1		ENST00000373696.7_1_X:70823497-70824427:+|nuORF	ENST00000373696.7_1_X:70823497-70824427:+|nuORF	ENST00000373696.7_1_X:70823497-70824427:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2977600097656	2	495.312438	988.610322	-0.0041349	-2.0481E-06	1.3934	0.00069015	1.3892	0.0006881	495.31398241974995	54.707	0.17876	54.476	54.315	54.494	-0.23087					6	4	2	0	0	0	0.027866	1	5797	5797		79.939	14.136	1	102960			81791	13087	57005	57099	90868	90868		486			0.11556154364586746
TVMKVKPSP	9	Unmodified	_TVMKVKPSP_					0	0	0			REV__ENST00000524964.1_1_11:126164366-126174190:-|nuORF	REV__ENST00000524964.1_1_11:126164366-126174190:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.3294982910156	2	493.788795	985.563038	2.0075	0.00099126	0.81628	0.00040307	2.8237	0.0013943	493.7891528519839	24.142	0.39261	23.961	23.848	24.241	-0.18089					10	8	2	0	0	0	0.024263	1	1036	1036		60.972	13.056	1	66783	+		81792	34402	57006	57100	90869	90869					0.06967875093585008
TVMKVKPSP	9	Unmodified	_TVMKVKPSP_					0	0	0			REV__ENST00000524964.1_1_11:126164366-126174190:-|nuORF	REV__ENST00000524964.1_1_11:126164366-126174190:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	493.788795	985.563038	-1.011	-0.00049923	4.364	0.0021549	3.353	0.0016557	493.7908941516755	24.288	1.1019	24.241	23.656	24.758	-0.047146	0.080658	0.000729	NaN	60.972	93	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1236400	+		81793	34402	57006	57100							0.06967875093585008
TVMQLRNEL	9	Unmodified	_TVMQLRNEL_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.3011474609375	2	552.297516	1102.58048	-0.29602	-0.00016349	2.4439	0.0013498	2.1479	0.0011863	552.2975513545102	54.106	1.1799	54.106	53.799	54.979	0					102	33	6	0	0	0	0.094442	1	5914	5914		112.41	16.596	1	4942300			81794	7612	57007	57101	90870	90870					0.033291706285808687
TVMQLRNEL	9	Unmodified	_TVMQLRNEL_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.30029296875	2	552.297516	1102.58048	-0.31135	-0.00017196	2.4219	0.0013376	2.1106	0.0011657	552.2974661676869	54.197	1.2928	54.05	53.639	54.932	-0.14724					107	36	6	0	0	0	0.062622	3	5902	5890;5902;5914		124.08	30.17	1	4465200			81795	7612	57007	57101	90871;90872;90873	90872					0.033291706285808687
TVMQLRNEL	9	Unmodified	_TVMQLRNEL_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MSMS	OPSCC_39_ClassI_Rep-3	3	552.3015747070312	2	552.297516	1102.58048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.914	1	54.012	53.512	54.512	0.098015								0	0	0	0.024584	1	5791	5791		124.08	13.96	1				81796	7612	57007	57101	90874	90874					0.033291706285808687
TVMQLRNEL	9	Unmodified	_TVMQLRNEL_					0	0	0		nc|ENSG00000166833|Q8IVL1-4|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	nc|ENSG00000166833|Q8IVL1-4|NAV2	MSMS	OPSCC_39_ClassI_Rep-3	3	552.3002319335938	2	552.297516	1102.58048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.985	1	54.083	53.583	54.583	0.098015								0	0	0	0.096778	1	5803	5803		93.143	16.369	1				81797	7612	57007	57101	90875	90875					0.033291706285808687
TVMRIKVL	8	Unmodified	_TVMRIKVL_					0	0	0			REV__nc|ENSG00000203780|Q8TC84-3|FANK1	REV__nc|ENSG00000203780|Q8TC84-3|FANK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2919616699219	2	480.307155	958.599758	-0.26434	-0.00012697	-0.19147	-9.1966E-05	-0.45581	-0.00021893	480.3082385624502	31.551	0.27483	31.366	31.245	31.52	-0.18503					10	6	2	0	0	0	0.027866	1	2122	2122		52.299	24.045	1	59905	+		81798	37072	57008	57102	90876	90876					0.11880171710163268
TVMTSNDYY	9	Unmodified	_TVMTSNDYY_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7803344726562	2	547.228965	1092.44338	-0.66735	-0.00036519	-4.3159	-0.0023618	-4.9832	-0.002727	547.2264822870314	73.367	0.51009	73.177	72.967	73.478	-0.19026					21	12	2	0	0	0	0.024427	1	8616	8616		26.693	0	1	192380	+		81799	25912	57010	57103	90877	90877					-0.09914783041654118
TVMYIALFLA	10	Unmodified	_TVMYIALFLA_					0	0	0			REV__OR5M8|p.T28A|1|0.31|ENSG00000181371|chr11:56491289-56491289|T/C|missense_variant	REV__OR5M8|p.T28A|1|0.31|ENSG00000181371|chr11:56491289-56491289|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.7822265625	2	571.319928	1140.6253	-0.23874	-0.0001364	-2.734	-0.001562	-2.9728	-0.0016984	571.3161311617856	90.835	0.54248	90.82	90.489	91.031	-0.015053					33	12	4	0	0	0	0.03519	1	11484	11484		11.511	0	1	141900	+		81800	37324	57011	57104	90878	90878					0.0606160144191108
TVMYLLSI	8	Oxidation (M)	_TVM(Oxidation (M))YLLSI_		TVM(1)YLLSI		TVM(46)YLLSI	0	0	1		ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.2637939453125	2	478.262079	954.509605	-0.17012	-8.1363E-05	3.5193	0.0016832	3.3492	0.0016018	478.26353279569645	38.808	0.80521	38.709	38.358	39.163	-0.098751					63	21	5	0	0	0	0.94517	1	3285	3285		45.952	7.1458	1	5460700			81801	10077	57012	57105	90879	90879		424			0.030530775910847296
TVMYSDSL	8	Oxidation (M)	_TVM(Oxidation (M))YSDSL_		TVM(1)YSDSL		TVM(68)YSDSL	0	0	1			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	466.2632141113281	2	466.207501	930.400449	-1.0411	-0.00048538	2.4165	0.0011266	1.3754	0.00064122	466.20836556614483	38.029	0.25404	37.811	37.607	37.861	-0.21848					9	6	2	0	0	0	0.027866	1	3087	3087		68.485	29.679	1	138860	+		81802	21249	57013	57106	90880	90880		651			-0.06753553099053988
TVMYWKQP	8	Unmodified	_TVMYWKQP_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.2730712890625	2	526.76532	1051.51609	-1.0717	-0.00056452	4.2653	0.0022468	3.1936	0.0016823	526.7672848722758	58.277	0.83767	58.102	57.859	58.697	-0.1749					56	22	4	0	0	0	0.027866	1	6654	6654		18.324	4.1873	1	2305000	+		81803	28437	57014	57107	90881	90881					-0.007609844575654279
TVNAGLAAEV	10	Unmodified	_TVNAGLAAEV_					0	0	0			REV__ENSG00000156218|ENST00000286744|ADAMTSL3	REV__ENSG00000156218|ENST00000286744|ADAMTSL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7558898925781	2	472.756007	943.497461	0.44422	0.00021001	-0.6329	-0.00029921	-0.18867	-8.9196E-05	472.7556908442252	42.904	1.5014	42.765	42.108	43.609	-0.13929					103	41	4	0	0	0	0.37169	1	3945	3945		101.6	5.5671	1	10041000	+		81804	25059	57015	57108	90882	90882					0.023451771722307058
TVNAGLAAEV	10	Unmodified	_TVNAGLAAEV_					0	0	0			REV__ENSG00000156218|ENST00000286744|ADAMTSL3	REV__ENSG00000156218|ENST00000286744|ADAMTSL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.75628662109375	2	472.756007	943.497461	0.63719	0.00030124	-0.87712	-0.00041466	-0.23993	-0.00011343	472.75558091197695	42.836	1.2514	42.862	42.12	43.371	0.026012					91	34	4	0	0	0	0.37169	1	3894	3894		101.6	5.5671	1	9379300	+		81805	25059	57015	57108	90883	90883					0.023451771722307058
TVNEKPPGVD	10	Unmodified	_TVNEKPPGVD_					0	0	0		nc|ENSG00000198342|Q9H7R0-2|ZNF442;ENSG00000198342|ENST00000242804|ZNF442	nc|ENSG00000198342|Q9H7R0-2|ZNF442	nc|ENSG00000198342|Q9H7R0-2|ZNF442	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2736206054688	2	528.272021	1054.52949	-0.12083	-6.383E-05	-3.9396	-0.0020812	-4.0604	-0.002145	528.7718274224452	58.791	0.55052	58.791	58.38	58.93	0					22	14	2	0	0	0	0.03519	1	6658	6658		25.574	0	1	394730			81806	10123	57016	57109	90884	90884					0.0044054485538254085
TVNLALVMPE	10	Unmodified	_TVNLALVMPE_					0	0	0			REV__ENST00000415912.6_1_1:21545990-21546407:-|nuORF	REV__ENST00000415912.6_1_1:21545990-21546407:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3233032226562	2	543.796817	1085.57908	-0.93469	-0.00050828	1.6784	0.0009127	0.74369	0.00040442	544.3010613335975	81.693	0.85225	81.693	81.097	81.95	0					34	20	2	0	0	0	0.03519	1	10199	10199		54.722	22.767	1	204220	+		81807	32067	57017	57110	90885	90885					0.03971536539847875
TVNNRMVW	8	Unmodified	_TVNNRMVW_					0	0	0			REV__nc|ENSG00000160179|P45844-8|ABCG1	REV__nc|ENSG00000160179|P45844-8|ABCG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.32318115234375	2	510.258194	1018.50183	-0.3801	-0.00019395	-0.37832	-0.00019304	-0.75842	-0.00038699	510.25780188916207	78.071	0.40488	78.071	77.918	78.323	0					13	9	2	0	0	0	0.027866	1	9682	9682		45.952	0	1	133160	+		81808	36833	57018	57111	90886	90886					-0.006676368858506976
TVNPSTGEVIC	11	Unmodified	_TVNPSTGEVIC_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.2698364257812	2	560.271164	1118.52777	-0.19736	-0.00011058	-2.1957	-0.0012302	-2.393	-0.0013407	560.2697182479949	70.495	0.92966	70.507	70.272	71.202	0.012421					52	22	3	0	0	0	0.87847	1	8445	8445		52.937	5.2794	1	2113100			81809	3101	57019	57112	90887	90887					-0.0267483222487499
TVNRQIQLL	9	Unmodified	_TVNRQIQLL_					0	0	0			REV__nc|ENSG00000186480|O15503-2|INSIG1	REV__nc|ENSG00000186480|O15503-2|INSIG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3114013671875	2	542.827298	1083.64004	-0.39719	-0.0002156	0.20307	0.00011023	-0.19411	-0.00010537	542.8271921646821	40.558	0.70323	40.558	40.347	41.051	0					48	19	3	0	0	0	0.024381	1	3593	3593		37.159	12.956	1	2049500	+		81810	22827	57020	57113	90888	90888					0.10156809634281672
TVNRQIQLL	9	Unmodified	_TVNRQIQLL_					0	0	0			REV__nc|ENSG00000186480|O15503-2|INSIG1	REV__nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.827298	1083.64004	-1.0657	-0.00057849	0.86612	0.00047015	-0.19958	-0.00010834	542.827548833148	40.8	0.72777	40.823	40.562	41.29	0.023006	0.16363	0.00073167	NaN	29.15	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1968200	+		81811	22827	57020	57113							0.10156809634281672
TVPCALELL	9	Unmodified	_TVPCALELL_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.750244140625	2	479.767529	957.520504	-0.14189	-6.8076E-05	3.1608	0.0015165	3.0189	0.0014484	479.7690258170012	32.776	0.60189	32.776	32.494	33.096	0					53	15	5	0	0	0	0.024354	1	2321	2321		30.504	1.3541	1	1254400	+		81812	28401	57021	57114	90889	90889					0.04004479965340124
TVPEAIIKW	9	Unmodified	_TVPEAIIKW_					0	0	0			REV__ENST00000572956.5_1_16:8736388-8739997:+|nuORF	REV__ENST00000572956.5_1_16:8736388-8739997:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7797241210938	2	528.808042	1055.60153	0.44619	0.00023595	-4.0661	-0.0021502	-3.6199	-0.0019142	528.8057804620031	49.928	0.63802	49.747	49.495	50.133	-0.18071					44	16	5	0	0	0	0.024263	1	5071	5071		60.972	0	1	1183300	+		81813	20359	57022	57115	90890	90890					0.075955039997325
TVPEPTPEP	9	Unmodified	_TVPEPTPEP_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.8794860839844	2	483.742565	965.470577	-0.74819	-0.00036193	-4.0128	-0.0019412	-4.761	-0.0023031	483.7404176610848	43.56	0.77515	43.323	43.061	43.836	-0.23736					26	20	2	0	0	0	0.024263	1	4030	4030		34.173	12.213	1	131480	+		81814	29184	57023	57116	90891	90891					-0.013539314389504398
TVPERSSF	8	Unmodified	_TVPERSSF_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MSMS	OPSCC_40_ClassI_Rep-3	6	461.7348327636719	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.97	1	103.8	103.3	104.3	-0.16791								0	0	0	0.8743	1	12921	12921		29.15	3.5755	1				81815	6567	57024	57117	90892	90892					-0.008273785162828062
TVPHGIYDL	9	Unmodified	_TVPHGIYDL_					0	0	0			REV__ENST00000450301.2_1_10:57427969-57428101:-|nuORF	REV__ENST00000450301.2_1_10:57427969-57428101:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7825012207031	2	507.766374	1013.5182	-0.13161	-6.6825E-05	-3.9989	-0.0020305	-4.1306	-0.0020974	507.7639428438764	42.018	0.75042	42.045	41.709	42.459	0.026012					35	21	2	0	0	0	0.024205	1	3835	3835		63.306	0	1	273530	+		81816	32697	57025	57118	90893	90893					0.011977675518778597
TVPINVCGGHS	11	Unmodified	_TVPINVCGGHS_					0	0	0		ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2789306640625	2	542.266216	1082.51788	-0.51854	-0.00028119	-1.4884	-0.00080709	-2.0069	-0.0010883	542.2653722828887	63.712	0.21768	63.461	63.3	63.518	-0.25141					7	5	2	0	0	0	0.024765	1	7440	7440		49.536	19.032	1	68267			81817	7464	57026	57119	90894	90894					-0.02007975439596521
TVPKPKRAPK	10	Unmodified	_TVPKPKRAPK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.279541015625	2	561.361308	1120.70806	0.66511	0.00037336	3.8276	0.0021487	4.4927	0.002522	561.363328857481	85.02	0.24733	85.02	84.958	85.206	0					6	5	2	0	0	0	0.03519	1	10676	10676		19.997	0	1	55047			81818	1599	57027	57120	90895	90895					0.15253679284910504
TVPKSQKKP	9	Unmodified	_TVPKSQKKP_					0	0	0			REV__ENST00000388967.3_1_3:36809324-36810203:-|nuORF	REV__ENST00000388967.3_1_3:36809324-36810203:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.3034973144531	2	506.811116	1011.60768	-0.49653	-0.00025165	-1.7249	-0.00087418	-2.2214	-0.0011258	506.8111339547124	56.714	1.0925	56.714	56.174	57.266	0					59	30	4	0	0	0	0.024367	1	6373	6373		44.377	5.1244	1	4233300	+		81819	31564	57028	57121	90896	90896					0.1023402223128187
TVPLLECQ	8	Unmodified	_TVPLLECQ_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7611083984375	2	451.736228	901.457904	-0.77234	-0.00034889	-1.959	-0.00088495	-2.7313	-0.0012338	451.7349394216967	38.511	0.71217	38.332	38.136	38.848	-0.17929					37	19	3	0	0	0	0.027866	1	3238	3238		17.365	0	1	408390	+		81820	25846	57029	57122	90897	90897					0.0032333389716541205
TVPLPSSPISE	11	Unmodified	_TVPLPSSPISE_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.8031005859375	2	563.803154	1125.59175	-0.14728	-8.3039E-05	2.5201	0.0014208	2.3728	0.0013378	563.8027857274413	107.08	0.742	107.08	106.7	107.44	-0.003479					75	24	4	0	0	0	1.0238	1	13695	13695		31.53	10.583	1	189000	+		81821	27387	57030	57123	90898	90898					0.0339827120371865
TVPLVPSFP	9	Unmodified	_TVPLVPSFP_					0	0	0			REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF	REV__ENST00000587992.1_1_19:10445574-10446063:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7610778808594	2	478.776211	955.537869	0.26497	0.00012686	-3.7187	-0.0017804	-3.4538	-0.0016536	478.7740424537984	33.887	0.46664	33.887	33.662	34.129	0					16	11	2	0	0	0	0.024381	1	2513	2513		45.952	10.334	1	186320	+		81822	35638	57031	57124	90899	90899					0.058321435626680795
TVPMLKQN	8	Unmodified	_TVPMLKQN_					0	0	0			REV__ENST00000429178.5_1_7:888195-889183:+|nuORF	REV__ENST00000429178.5_1_7:888195-889183:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2870178222656	2	465.757495	929.500437	0.047279	2.202E-05	-2.9755	-0.0013859	-2.9282	-0.0013639	465.75596718445945	75.497	0.59824	75.321	74.986	75.584	-0.17548					29	14	3	0	0	0	0.027866	1	8906	8906		60.972	15.02	1	368880	+		81823	32328	57032	57125	90900	90900					0.03286729025387558
TVPPVFVSV	9	Unmodified	_TVPPVFVSV_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7768249511719	2	472.776211	943.537869	0.37631	0.00017791	0.079252	3.7469E-05	0.45556	0.00021538	472.7760629626344	79.193	2.2086	79.193	78.122	80.331	0					110	52	3	0	0	0	0.17455	3	9813	9802;9813;9824		94.006	0	1	1289400			81824	6514	57033	57126	90901;90902;90903	90902					0.06384143562661393
TVPPVFVSV	9	Unmodified	_TVPPVFVSV_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7765197753906	2	472.776211	943.537869	0.29213	0.00013811	0.13291	6.2839E-05	0.42504	0.00020095	472.7760702488584	79.302	2.2495	79.321	78.441	80.691	0.018677					107	53	3	0	0	0	0.18915	3	9726	9726;9775;9799		90.777	18.479	1	1137800			81825	6514	57033	57126	90904;90905;90906	90904					0.06384143562661393
TVPRKQKL	8	Unmodified	_TVPRKQKL_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2716064453125	2	485.313826	968.613099	0.32957	0.00015995	-0.027706	-1.3446E-05	0.30186	0.0001465	485.3136458450043	32.694	0.70101	32.502	32.162	32.863	-0.19262					34	16	3	0	0	0	0.027866	1	2313	2313		52.299	13.493	1	215550	+		81826	25619	57034	57127	90907	90907					0.12753745813745354
TVPRLKEL	8	Unmodified	_TVPRLKEL_					0	0	0			REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.3004150390625	2	478.300384	954.586216	0.16459	7.8724E-05	0.031339	1.499E-05	0.19593	9.3714E-05	478.30026947860597	65.818	1.1665	65.546	65.055	66.221	-0.27282					82	31	4	0	0	0	0.59392	1	7803	7803		76.847	0	1	4858100	+		81827	21566	57035	57128	90908	90908					0.10710637202555517
TVPRRPGL	8	Unmodified	_TVPRRPGL_					0	0	0		ENST00000433510.2_1_17:46713876-46724046:-|nuORF	ENST00000433510.2_1_17:46713876-46724046:-|nuORF	ENST00000433510.2_1_17:46713876-46724046:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2755432128906	2	448.277244	894.539935	-0.80659	-0.00036158	0.79439	0.00035611	-0.012205	-5.4713E-06	448.2774972011336	39.609	0.79549	39.505	39.229	40.025	-0.10381					47	21	3	0	0	0	0.95679	1	3425	3425		44.117	5.3107	1	2631000			81828	14229	57036	57129	90909	90909					0.08844617091131113
TVPRRPGL	8	Unmodified	_TVPRRPGL_					0	0	0		ENST00000433510.2_1_17:46713876-46724046:-|nuORF	ENST00000433510.2_1_17:46713876-46724046:-|nuORF	ENST00000433510.2_1_17:46713876-46724046:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	448.27587890625	2	448.277244	894.539935	-0.75969	-0.00034055	0.66133	0.00029646	-0.098359	-4.4092E-05	448.2774826863956	39.846	0.8627	39.87	39.562	40.424	0.023727					57	23	4	0	0	0	1.0516	1	3422	3422		29.15	0	1	3059900			81829	14229	57036	57129	90910	90910					0.08844617091131113
TVPRVLKNPV	10	Unmodified	_TVPRVLKNPV_					0	0	0		ENST00000258739.8_1_7:6501985-6502291:-|nuORF	ENST00000258739.8_1_7:6501985-6502291:-|nuORF	ENST00000258739.8_1_7:6501985-6502291:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.2794189453125	2	561.853316	1121.69208	0.35661	0.00020036	2.9192	0.0016402	3.2758	0.0018405	562.3579044065101	84.983	0.74361	84.78	84.336	85.079	-0.20329					17	17	2	0	0	0	0.03519	1	10315	10315		32.812	7.2384	1	48017			81830	11426	57037	57130	90911	90911					0.13609973048028223
TVPRVQSALMH	11	Unmodified	_TVPRVQSALMH_					0	0	0			REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF	REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.8658142089844	3	413.560652	1237.66013	0.20036	8.2863E-05	3.9673	0.0016407	4.1677	0.0017236	413.5620808251636	19.847	0.37462	19.728	19.495	19.87	-0.11872					11	7	2	0	0	0	0.024757	1	423	423		15.337	4.2407	1	16419	+		81831	33321	57038	57131	90912	90912					0.050802373025589986
TVPSCYLYV	9	Unmodified	_TVPSCYLYV_					0	0	0			REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7587280273438	2	522.757161	1043.49977	-0.52619	-0.00027507	3.9987	0.0020903	3.4725	0.0018153	522.7591533565277	41.165	1.0272	41.029	40.712	41.74	-0.13554					66	26	4	0	0	0	0.52323	1	3635	3635		57.811	1.3775	1	5741100	+		81832	24841	57039	57132	90913	90913					-0.02024110414322422
TVPSCYLYV	9	Unmodified	_TVPSCYLYV_					0	0	0			REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7583618164062	2	522.757161	1043.49977	-0.13436	-7.0237E-05	3.8887	0.0020329	3.7544	0.0019626	522.7589563033606	41.374	1.0335	41.146	40.807	41.841	-0.2278					77	26	5	0	0	0	0.52323	1	3629	3629		57.811	3.0889	1	5411400	+		81833	24841	57039	57132	90914	90914					-0.02024110414322422
TVPSCYLYV	9	Unmodified	_TVPSCYLYV_					0	0	0			REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7586059570312	2	522.757161	1043.49977	-0.44108	-0.00023058	3.6464	0.0019062	3.2053	0.0016756	522.7590362876288	41.446	0.9458	41.216	40.886	41.832	-0.23029					52	24	3	0	0	0	0.64155	1	3666	3666		50.025	4.0523	1	5720600	+		81834	24841	57039	57132	90915	90915					-0.02024110414322422
TVPTRVQT	8	Unmodified	_TVPTRVQT_					0	0	0			REV__ENSG00000269343|ENST00000594901|ZNF587B	REV__ENSG00000269343|ENST00000594901|ZNF587B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2817077636719	2	451.258717	900.50288	0.41085	0.0001854	-0.13721	-6.1918E-05	0.27363	0.00012348	451.25851130207474	50.51	0.70024	50.404	50.202	50.902	-0.10558					28	18	2	0	0	0	0.027866	1	5190	5190		47.916	0	1	758780	+		81835	29157	57040	57133	90916	90916					0.048649007547169276
TVPTRVQT	8	Unmodified	_TVPTRVQT_					0	0	0			REV__ENSG00000269343|ENST00000594901|ZNF587B	REV__ENSG00000269343|ENST00000594901|ZNF587B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2818908691406	2	451.258717	900.50288	0.26382	0.00011905	-0.24301	-0.00010966	0.020808	9.3898E-06	451.25854213696306	50.816	0.59198	50.54	50.299	50.891	-0.27643					26	15	2	0	0	0	0.027866	1	5212	5212		38.806	0	1	377540	+		81836	29157	57040	57133	90917	90917					0.048649007547169276
TVQELNFRSN	10	Unmodified	_TVQELNFRSN_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	403.2069396972656	3	403.207043	1206.5993	-0.31353	-0.00012642	0.35528	0.00014325	0.041742	1.6831E-05	403.2071815592804	35.012	1.2319	34.99	34.551	35.783	-0.021767					87	31	4	0	0	0	1.0461	1	2669	2669		39.873	1.1591	1	7338900			81837	11066	57041	57134	90918	90918					0.0042642352398161165
TVQEPPLNV	9	Unmodified	_TVQEPPLNV_					0	0	0			REV__ENSG00000124920|ENST00000278836|MYRF	REV__ENSG00000124920|ENST00000278836|MYRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.2851867675781	2	498.771657	995.528761	-0.2413	-0.00012035	0.68558	0.00034195	0.44428	0.00022159	498.77193648884696	34.366	0.81757	34.159	33.549	34.366	-0.20696					23	20	2	0	0	0	0.024397	1	2555	2555		39.253	10.103	1	45659	+		81838	22796	57042	57135	90919	90919					0.030817502063200664
TVQEPPLNV	9	Unmodified	_TVQEPPLNV_					0	0	0			REV__ENSG00000124920|ENST00000278836|MYRF	REV__ENSG00000124920|ENST00000278836|MYRF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	498.771657	995.528761	-0.1138	-5.676E-05	2.5351	0.0012645	2.4213	0.0012077	498.77352294632857	34.298	0.27584	34.298	34.168	34.444	0	0.069673	0.0011965	NaN	31.53	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50427	+		81839	22796	57042	57135							0.030817502063200664
TVQKLKNP	8	Unmodified	_TVQKLKNP_					0	0	0			REV__nc|ENSG00000151743|Q8IY45-2|AMN1	REV__nc|ENSG00000151743|Q8IY45-2|AMN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.2947082519531	2	464.284734	926.554916	-0.82808	-0.00038446	-1.5946	-0.00074035	-2.4227	-0.0011248	464.28398883963735	48.814	0.59534	48.713	48.396	48.992	-0.1008					32	15	3	0	0	0	0.027866	1	4832	4832		18.324	0	1	146030	+		81840	24793	57043	57136	90920	90920					0.08870064168456793
TVQLQTVKP	9	Unmodified	_TVQLQTVKP_					0	0	0			REV__ENST00000479096.1_1_20:30135258-30136578:+|nuORF	REV__ENST00000479096.1_1_20:30135258-30136578:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8309020996094	2	507.303124	1012.5917	-0.59601	-0.00030236	0.081263	4.1225E-05	-0.51475	-0.00026113	507.30292530085063	46.888	0.46926	46.694	46.38	46.85	-0.19387					22	13	2	0	0	0	0.024397	1	4536	4536		56.721	32.202	1	418680	+		81841	33387	57044	57137	90921	90921					0.08590315994376851
TVQLRQNN	8	Unmodified	_TVQLRQNN_					0	0	0			REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	REV__nc|ENSG00000007129|Q3KPI0-2|CEACAM21	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7946472167969	2	486.764697	971.514842	-0.98976	-0.00048178	1.7611	0.00085726	0.77137	0.00037548	486.7653734744776	28.454	0.50054	28.454	28.113	28.613	0					18	11	2	0	0	0	0.027866	1	1639	1639		31.955	18.996	1	101390	+		81842	19852	57045	57138	90922	90922					0.027945174978867726
TVQLVEILP	9	Unmodified	_TVQLVEILP_					0	0	0			REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.307861328125	2	506.307875	1010.6012	0.27139	0.00013741	-0.21359	-0.00010814	0.057806	2.9268E-05	506.3076533848368	87.645	1.0125	87.509	87.136	88.148	-0.13613					55	24	3	0	0	0	0.15029	1	10681	10681		99.375	0	1	710350	+		81843	19682	57046	57139	90923	90923					0.0963208427989457
TVQLVEILP	9	Unmodified	_TVQLVEILP_					0	0	0			REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.307875	1010.6012	0.073954	3.7444E-05	0.22061	0.0001117	0.29457	0.00014914	506.3078862326854	87.694	1.1922	87.694	87.321	88.513	0	0.10519	0.00019799	NaN	99.375	65	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1363700	+		81844	19682	57046	57139							0.0963208427989457
TVQLVEILP	9	Unmodified	_TVQLVEILP_					0	0	0			REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	506.307875	1010.6012	0.29222	0.00014795	-0.12018	-6.0847E-05	0.17205	8.7108E-05	506.3076656943394	87.659	1.06	87.623	87.279	88.339	-0.035362	0.034794	-0.0001471	NaN	99.375	68	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1318400	+		81845	19682	57046	57139							0.0963208427989457
TVQLVEILP	9	Unmodified	_TVQLVEILP_					0	0	0			REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.307875	1010.6012	0.85657	0.00043369	-0.73004	-0.00036963	0.12653	6.4063E-05	506.3073741027296	87.703	1.1502	87.721	87.346	88.496	0.018555	0.13247	-0.00076466	NaN	99.375	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1232800	+		81846	19682	57046	57139							0.0963208427989457
TVQLVEILP	9	Unmodified	_TVQLVEILP_					0	0	0			REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	506.307875	1010.6012	0.27139	0.00013741	-0.21359	-0.00010814	0.057806	2.9268E-05	506.3076533848368	87.645	1.0125	87.509	87.136	88.148	-0.13613	-0.079429	-0.00024169	NaN	99.375	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710350	+		81847	19682	57046	57139							0.0963208427989457
TVQLVEILP	9	Unmodified	_TVQLVEILP_					0	0	0			REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	REV__DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	506.307875	1010.6012	-0.1512	-7.6556E-05	0.31608	0.00016004	0.16488	8.348E-05	506.30791743129794	87.619	1.1107	87.481	87.122	88.232	-0.13734	-0.10729	0.00029466	NaN	99.375	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	765780	+		81848	19682	57046	57139							0.0963208427989457
TVQPRRSR	8	Unmodified	_TVQPRRSR_					0	0	0			REV__ENSG00000159348|ENST00000367249|CYB5R1	REV__ENSG00000159348|ENST00000367249|CYB5R1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2780456542969	2	500.293956	998.57336	0.024294	1.2154E-05	0.55848	0.00027941	0.58278	0.00029156	500.29421005630263	61.013	0.37138	61.013	60.845	61.216	0					17	9	3	0	0	0	0.027866	1	7018	7018		17.365	0	1	507430	+		81849	25248	57047	57140	90924	90924					0.07401618863036674
TVQPVIIYL	9	Unmodified	_TVQPVIIYL_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.319091796875	2	523.318243	1044.62193	0.39261	0.00020546	-0.75147	-0.00039326	-0.35885	-0.00018779	523.3177513851402	96.815	1.1515	96.824	96.443	97.594	0.0089111					57	25	3	0	0	0	0.31247	1	12310	12310		73.975	10.668	1	828680			81850	9042	57048	57141	90925	90925					0.1014067465955577
TVQPVIIYL	9	Unmodified	_TVQPVIIYL_					0	0	0		ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	ENSG00000181433|ENST00000370709|SAGE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3193359375	2	523.318243	1044.62193	0.95439	0.00049945	-1.5838	-0.00082882	-0.62938	-0.00032937	523.3174105144036	96.942	1.0204	96.942	96.572	97.592	-3.0518E-05					64	22	4	0	0	0	0.17822	2	12284	12284;12294		93.195	15.878	1	818050			81851	9042	57048	57141	90926;90927	90926					0.1014067465955577
TVQQLTAAQ	9	Unmodified	_TVQQLTAAQ_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7878112792969	2	480.261456	958.50836	-0.16744	-8.0413E-05	-2.3726	-0.0011395	-2.54	-0.0012199	480.26170300954834	22.761	0.78803	22.686	22.223	23.011	-0.075296					48	16	5	0	0	0	0.024292	1	775	775		49.442	0	1	81275			81852	1191	57049	57142	90928	90928					0.027445795465155243
TVQRPGRI	8	Unmodified	_TVQRPGRI_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.76220703125	2	463.780151	925.545748	0.21916	0.00010164	0.10614	4.9226E-05	0.3253	0.00015087	463.7801200849687	29.129	0.70304	29.207	28.904	29.607	0.078346					30	17	2	0	0	0	0.027866	1	1700	1700		42.474	10.52	1	59896			81853	1954	57050	57143	90929	90929					0.07999715602795732
TVQRPGRI	8	Unmodified	_TVQRPGRI_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	463.780151	925.545748	-1.3746	-0.00063753	2.2506	0.0010438	0.87599	0.00040627	463.78100667706707	29.526	0.66476	29.526	29.149	29.814	0	0.15747	0.0011208	NaN	42.474	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74856			81854	1954	57050	57143							0.07999715602795732
TVQRPGRI	8	Unmodified	_TVQRPGRI_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.780151	925.545748	-0.50424	-0.00023385	0.84827	0.00039341	0.34404	0.00015956	463.78054101285994	29.37	0.69698	29.373	29.055	29.751	0.0031357	0.0043297	-0.00017993	NaN	42.474	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67501			81855	1954	57050	57143							0.07999715602795732
TVQRRPSM	8	Unmodified	_TVQRRPSM_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7647399902344	2	487.763643	973.512734	-0.43061	-0.00021004	-1.242	-0.0006058	-1.6726	-0.00081584	487.762358212796	20.484	0.73275	20.379	19.837	20.569	-0.10477					22	14	2	0	0	0	0.027866	1	476	476		7.6903	0	1	14546	+		81856	20736	57051	57144	90930	90930					0.024917654884461626
TVQSTVMDPV	10	Unmodified	_TVQSTVMDPV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.7664184570312	2	538.768257	1075.52196	-0.27394	-0.00014759	-1.9794	-0.0010665	-2.2534	-0.001214	538.7666447055639	83.419	1.3727	83.328	82.744	84.117	-0.090454					116	31	7	0	0	0	0.40067	1	10399	10399		98.629	0	1	1524900	+		81857	27387	57052	57145	90931	90931					-0.012779307365690329
TVQTDPNPT	9	Unmodified	_TVQTDPNPT_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-5|ISM2	REV__nc|ENSG00000100593|Q6H9L7-5|ISM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7480773925781	2	486.735271	971.45599	0.01421	6.9165E-06	-1.2596	-0.0006131	-1.2454	-0.00060619	486.73448333212275	70.312	0.36839	70.058	69.772	70.14	-0.25351					15	8	2	0	0	0	0.024359	1	8166	8166		47.96	3.5823	1	96488	+		81858	36521	57053	57146	90932	90932					-0.030880035871064138
TVQVKMFK	8	Unmodified	_TVQVKMFK_					0	0	0			REV__ENST00000338920.8_1_1:171510416-171510455:+|nuORF	REV__ENST00000338920.8_1_1:171510416-171510455:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2584228515625	2	490.783513	979.552473	-0.014268	-7.0024E-06	-2.8408	-0.0013942	-2.855	-0.0014012	490.7816950059083	75.012	0.59978	74.753	74.577	75.177	-0.25887					26	14	3	0	0	0	0.027866	1	9192	9192		42.396	10.441	1	199050	+		81859	30598	57054	57147	90933	90933					0.06187892439163534
TVQVLEAIP	9	Unmodified	_TVQVLEAIP_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;ENSG00000169692|ENST00000371696|AGPAT2;nc|ENSG00000169692|O15120-2|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.26129150390625	2	485.2844	968.554247	-1.9311	-0.00093714	4.0969	0.0019882	2.1658	0.001051	485.28631250074415	38.494	0.85971	38.521	37.987	38.847	0.027275					49	23	4	0	0	0	0.022832	1	3150	3150		93.195	36.474	1	372660			81860	7966	57055	57148	90934	90934					0.06871224728752168
TVQVLSSGEVH	11	Unmodified	_TVQVLSSGEVH_					0	0	0		nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	nc|ENSG00000120549|Q5T5P2-3|KIAA1217	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3053588867188	2	578.303852	1154.59315	0.22895	0.0001324	1.6785	0.00097067	1.9074	0.0011031	578.3047626805482	110.1	0.30796	109.95	109.85	110.15	-0.14889					23	14	2	0	0	0	0.99553	1	13511	13511		37.812	3.639	1	86568			81861	3824	57056	57149	90935	90935					0.022039052924583302
TVRFPDGQI	9	Unmodified	_TVRFPDGQI_					0	0	0		ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-2|CHRNA7	ENSG00000175344|ENST00000306901|CHRNA7	ENSG00000175344|ENST00000306901|CHRNA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8146362304688	2	516.777274	1031.53999	-0.51698	-0.00026716	0.29983	0.00015495	-0.21714	-0.00011221	516.7774138331982	60.299	0.63083	60.299	59.988	60.619	0					27	16	2	0	0	0	0.023239	1	6917	6917		84.916	0	1	670370			81862	8553	57057	57150	90936	90936					0.02548572300474916
TVRGEPHLRL	10	Unmodified	_TVRGEPHLRL_					0	0	0		ENST00000308064.6_1_11:45672204-45674138:-|nuORF	ENST00000308064.6_1_11:45672204-45674138:-|nuORF	ENST00000308064.6_1_11:45672204-45674138:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3416137695312	2	589.343646	1176.67274	0.82715	0.00048747	-1.7486	-0.0010306	-0.9215	-0.00054308	589.3423171920064	103.68	0.66261	103.68	103.44	104.11	-0.0032196					38	15	3	0	0	0	1.118	1	13256	13256		30.318	6.795	1	579690			81863	12021	57058	57151	90937	90937					0.09147016757128767
TVRGGFDL	8	Unmodified	_TVRGGFDL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.7319030761719	2	432.732335	863.450116	0.38383	0.0001661	-1.6435	-0.00071119	-1.2596	-0.00054509	432.7315659703223	98.469	1.9332	98.479	97.684	99.617	0.010231					99	44	3	0	0	0	0.97924	1	12611	12611		40.573	0	1	3615900	+		81864	23105	57059	57152	90938	90938					0.01292942691884491
TVRGPRRRRRA	11	Unmodified	_TVRGPRRRRRA_					0	0	0		ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	ENST00000322893.11_1_14:63483627-63512140:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2403869628906	3	460.955498	1379.84466	0.098803	4.5544E-05	4.016	0.0018512	4.1148	0.0018967	461.29183000796996	54.471	0.55692	54.321	54.017	54.574	-0.15036					19	15	2	0	0	0	0.02486	1	5932	5932		5.4129	0	1	236820			81865	12231	57060	57153	90939	90939					0.16993606288019691
TVRGQARHP	9	Unmodified	_TVRGQARHP_					0	0	0		ENSG00000129038|ENST00000261921|LOXL1	ENSG00000129038|ENST00000261921|LOXL1	ENSG00000129038|ENST00000261921|LOXL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.3103332519531	2	511.286131	1020.55771	-0.10668	-5.4544E-05	-2.226	-0.0011381	-2.3327	-0.0011927	511.2851190030251	77.558	0.20604	77.558	77.426	77.632	0					7	4	2	0	0	0	0.024427	1	9568	9568		34.173	6.2903	1	34158			81866	4327	57061	57154	90940	90940					0.0482533234597895
TVRKLLSSL	9	Unmodified	_TVRKLLSSL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.3025817871094	2	508.826766	1015.63898	-0.21176	-0.00010775	3.2551	0.0016563	3.0433	0.0015485	508.8283636775702	54.791	0.32212	54.889	54.66	54.982	0.098015					13	8	2	0	0	0	0.024527	1	5910	5910		31.53	4.8369	1	129120			81867	1896	57062	57155	90941	90941					0.13178595265389959
TVRKLLSSL	9	Unmodified	_TVRKLLSSL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.826766	1015.63898	-0.21419	-0.00010899	2.993	0.0015229	2.7788	0.0014139	508.82813893152877	54.961	0.25498	54.961	54.794	55.049	0	0.068634	-0.00036426	NaN	31.53	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74548			81868	1896	57062	57155							0.13178595265389959
TVRKLLSSL	9	Unmodified	_TVRKLLSSL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.826766	1015.63898	-0.26189	-0.00013326	3.5395	0.001801	3.2776	0.0016677	508.8285482184472	54.978	0.28747	54.828	54.745	55.033	-0.15036	-0.064713	0.00019186	NaN	31.53	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93033			81869	1896	57062	57155							0.13178595265389959
TVRPKNAAL	9	Unmodified	_TVRPKNAAL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.2960205078125	2	485.295633	968.576714	-0.12366	-6.0013E-05	-0.29067	-0.00014106	-0.41433	-0.00020107	485.295310707177	24.8	0.40615	24.878	24.685	25.091	0.078344					15	8	2	0	0	0	0.30449	1	1063	1063		75.043	5.4157	1	581660			81870	4783	57063	57156	90942	90942					0.09116868917021748
TVRPKNAAL	9	Unmodified	_TVRPKNAAL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2952880859375	2	485.295633	968.576714	1.513	0.00073423	-1.4435	-0.00070054	0.069417	3.3688E-05	485.294870116159	24.982	0.68536	24.811	24.556	25.241	-0.17151					26	15	2	0	0	0	0.54416	1	1120	1120		56.434	1.6575	1	496160			81871	4783	57063	57156	90943	90943					0.09116868917021748
TVRPKNAAL	9	Unmodified	_TVRPKNAAL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.295633	968.576714	-0.72557	-0.00035212	-0.11808	-5.7303E-05	-0.84365	-0.00040942	485.2953899585205	24.852	0.48588	24.852	24.608	25.094	0	0.007326	-0.00020787	NaN	75.043	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638390			81872	4783	57063	57156							0.09116868917021748
TVRPKNAAL	9	Unmodified	_TVRPKNAAL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.295633	968.576714	-1.244	-0.00060372	0.87313	0.00042373	-0.37088	-0.00017999	485.29594974511036	24.884	0.3979	24.85	24.681	25.079	-0.034395	0.0051344	0.0007542	NaN	75.043	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621570			81873	4783	57063	57156							0.09116868917021748
TVRPKNAAL	9	Unmodified	_TVRPKNAAL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.295633	968.576714	-0.45385	-0.00022025	0.49931	0.00024231	0.045456	2.206E-05	485.29577088249073	25.193	0.6857	24.966	24.708	25.394	-0.22683	0.12168	0.00039137	NaN	75.043	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489180			81874	4783	57063	57156							0.09116868917021748
TVRPKNAAL	9	Unmodified	_TVRPKNAAL_					0	0	0		ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	ENSG00000134323|ENST00000281043|MYCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.295633	968.576714	-0.17492	-8.4887E-05	0.32619	0.0001583	0.15127	7.3412E-05	485.2956808319278	24.885	0.60887	24.71	24.468	25.077	-0.17484	-0.13429	0.00022334	NaN	75.043	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496730			81875	4783	57063	57156							0.09116868917021748
TVRPRSGL	8	Unmodified	_TVRPRSGL_					0	0	0			REV__ENST00000554467.5_1_12:57626939-57627538:+|nuORF	REV__ENST00000554467.5_1_12:57626939-57627538:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2420349121094	2	443.266876	884.519199	-1.5505	-0.00068729	2.6435	0.0011718	1.093	0.00048451	443.2674023923324	38.31	0.65012	38.337	38.197	38.847	0.027279					19	17	2	0	0	0	0.027866	1	3126	3126		82.305	2.854	1	175250	+		81876	34989	57064	57157	90944	90944					0.07232026711460549
TVRSALVW	8	Unmodified	_TVRSALVW_					0	0	0		ENST00000291294.6_1_19:47123946-47124471:-|nuORF	ENST00000291294.6_1_19:47123946-47124471:-|nuORF	ENST00000291294.6_1_19:47123946-47124471:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.27197265625	2	466.271627	930.528701	0.25947	0.00012098	-0.18114	-8.4461E-05	0.078332	3.6524E-05	466.27133436356917	36.328	0.8707	36.111	35.779	36.65	-0.21661					63	22	5	0	0	0	0.95679	1	2845	2845		44.117	5.3107	1	2798600			81877	11795	57065	57158	90945	90945					0.06065794996993645
TVRVMKRR	8	Unmodified	_TVRVMKRR_					0	0	0		ENST00000566987.5_1_16:71898855-71901807:-|nuORF;ENST00000565516.5_1_16:71898855-71913932:-|nuORF;ENST00000313565.10_1_16:71898855-71918020:-|nuORF	ENST00000566987.5_1_16:71898855-71901807:-|nuORF	ENST00000566987.5_1_16:71898855-71901807:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3037719726562	2	523.324202	1044.63385	0.40188	0.00021031	2.0956	0.0010967	2.4975	0.001307	523.32515317778	87.914	0.35283	87.778	87.559	87.912	-0.13613					11	8	2	0	0	0	0.027866	1	10720	10720		23.042	11.531	1	77888			81878	12104	57066	57159	90946	90946					0.11332012921775458
TVRVRGGNKKY	11	Unmodified	_TVRVRGGNKKY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.5861511230469	3	426.586077	1276.7364	1.0875	0.0004639	-1.2032	-0.00051327	-0.11573	-4.937E-05	426.5856060133131	18.428	0.93855	18.272	18.05	18.989	-0.15637					53	18	5	0	0	0	0.99648	1	300	300		37.6	13.368	1	1333200			81879	5596	57067	57160	90947	90947					0.10910377194250032
TVRVRGGNKKY	11	Unmodified	_TVRVRGGNKKY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.5863037109375	3	426.586077	1276.7364	0.48423	0.00020656	-0.6874	-0.00029323	-0.20317	-8.6669E-05	426.5858264495261	18.49	1.0882	18.287	18.014	19.102	-0.20371					57	21	5	0	0	0	0.86757	1	304	304		53.597	25.02	1	1436600			81880	5596	57067	57160	90948	90948					0.10910377194250032
TVRVRGGNKKY	11	Unmodified	_TVRVRGGNKKY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	426.586077	1276.7364	2.7789	0.0011855	-2.9663	-0.0012654	-0.18741	-7.9945E-05	426.5845999999396	18.112	0.34388	18.112	17.94	18.284	0	-0.15769	-0.0015723	NaN	53.597	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30845			81881	5596	57067	57160							0.10910377194250032
TVRVRGGNKKY	11	Unmodified	_TVRVRGGNKKY_					0	0	0		ENSG00000142937|ENST00000396651|RPS8;ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENSG00000142937|ENST00000396651|RPS8	ENSG00000142937|ENST00000396651|RPS8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	426.586077	1276.7364	4.428	0.0018889	-3.9135	-0.0016695	0.51442	0.00021945	426.5844130151495	18.314	0.38781	18.378	18.261	18.649	0.063307	0.1083	-0.0027845	NaN	53.597	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17443			81882	5596	57067	57160							0.10910377194250032
TVRWKGEP	8	Unmodified	_TVRWKGEP_					0	0	0		ENST00000481263.1_1_22:40362084-40364372:+|nuORF	ENST00000481263.1_1_22:40362084-40364372:+|nuORF	ENST00000481263.1_1_22:40362084-40364372:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.28741455078125	2	486.766709	971.518865	-0.46261	-0.00022518	1.1125	0.00054153	0.6499	0.00031635	486.7668127666993	28.728	0.69007	28.559	28.294	28.985	-0.16897					29	15	3	0	0	0	0.027866	1	1722	1722		37.159	8.0096	1	173660			81883	15224	57068	57161	90949	90949					0.03196606991616591
TVSAQDDFPL	10	Unmodified	_TVSAQDDFPL_					0	0	0			REV__ENST00000327064.8_1_19:11032637-11032877:+|nuORF	REV__ENST00000327064.8_1_19:11032637-11032877:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.7656860351562	2	546.764029	1091.5135	-0.55009	-0.00030077	0.27873	0.0001524	-0.27136	-0.00014837	546.7640736317584	67.351	0.97653	67.351	67.049	68.026	0					69	24	4	0	0	0	0.77808	1	8023	8023		62.107	4.2961	1	4128000	+		81884	30411	57069	57162	90950	90950					-0.02859161381525155
TVSFLLGKPD	10	Unmodified	_TVSFLLGKPD_					0	0	0			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.327880859375	2	538.802957	1075.59136	-1.0292	-0.00055454	0.61034	0.00032885	-0.41886	-0.00022568	539.3060630710403	82.018	1.077	82.044	81.454	82.531	0.025711					34	25	2	0	0	0	0.03519	1	10142	10142		47.657	0	1	616510	+		81885	21032	57070	57163	90951	90951					0.05658896274530889
TVSGIGGFLVS	11	Unmodified	_TVSGIGGFLVS_					0	0	0		ENST00000435485.5_1_9:109262681-109320839:+|nuORF;ENST00000593581.5_1_19:8439309-8454924:-|nuORF;ENST00000564621.1_1_15:74754385-74771599:+|nuORF;ENST00000597785.1_1_19:8439309-8454924:-|nuORF	ENST00000435485.5_1_9:109262681-109320839:+|nuORF;ENST00000597785.1_1_19:8439309-8454924:-|nuORF	ENST00000435485.5_1_9:109262681-109320839:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7894897460938	2	518.787307	1035.56006	0.49233	0.00025541	-1.7502	-0.00090796	-1.2578	-0.00065255	518.7863055557881	85.731	0.54142	85.731	85.247	85.789	0					36	12	4	0	0	0	0.28593	1	10739	10739		90.37	13.052	1	1613400			81886	14262;17456	57071	57164	90952	90952					0.04370323240414109
TVSHLPAYSD	10	Unmodified	_TVSHLPAYSD_					0	0	0			REV__ZDBF2|p.H877Y|1|0.25|ENSG00000204186|chr2:206307157-206307157|C/T|missense_variant	REV__ZDBF2|p.H877Y|1|0.25|ENSG00000204186|chr2:206307157-206307157|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.2828369140625	2	545.264196	1088.51384	0.028786	1.5696E-05	0.186	0.00010142	0.21479	0.00011712	545.2644541270839	50.684	1.0077	50.408	49.732	50.74	-0.27643					43	26	3	0	0	0	0.03519	1	5194	5194		20.947	0	1	1987500	+		81887	37793	57072	57165	90953	90953					-0.026877416616798655
TVSIIGLGR	9	Unmodified	_TVSIIGLGR_					0	0	0		GRHPR|p.G157S|1|0.09|ENSG00000137106|chr9:37428548-37428548|G/A|missense_variant	GRHPR|p.G157S|1|0.09|ENSG00000137106|chr9:37428548-37428548|G/A|missense_variant	GRHPR|p.G157S|1|0.09|ENSG00000137106|chr9:37428548-37428548|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.2665100097656	2	458.284734	914.554916	-0.40786	-0.00018692	-3.6229	-0.0016603	-4.0308	-0.0018472	458.28259885532447	28.363	0.48414	28.211	28	28.484	-0.15195					19	11	2	0	0	0	0.024323	1	1656	1656		35.618	0	1	200830			81888	17694	57073	57166	90954	90954					0.09422064168484212
TVSIIPFAR	9	Unmodified	_TVSIIPFAR_					0	0	0			REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF	REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.27032470703125	2	502.300384	1002.58622	-0.4284	-0.00021519	1.2683	0.00063704	0.83985	0.00042186	502.30070698693294	39.743	0.7032	39.52	39.111	39.815	-0.22311					32	17	3	0	0	0	0.024457	1	3394	3394		15.642	0	1	352790	+		81889	34294	57074	57167	90955	90955					0.08502637202559526
TVSKKDFIS	9	Unmodified	_TVSKKDFIS_					0	0	0		ENSG00000067533|ENST00000366932|RRP15	ENSG00000067533|ENST00000366932|RRP15	ENSG00000067533|ENST00000366932|RRP15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7745361328125	2	512.787307	1023.56006	-0.71568	-0.00036699	3.2826	0.0016833	2.5669	0.0013163	512.7899764971469	48.107	0.15333	47.831	47.775	47.928	-0.27598					5	3	2	0	0	0	0.024477	1	4732	4732		14.865	0	1	111530			81890	1363	57075	57168	90956	90956					0.04922323240418791
TVSLMGLPL	9	Unmodified	_TVSLMGLPL_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.738037109375	2	465.770071	929.52559	-0.34753	-0.00016187	4.3187	0.0020115	3.9711	0.0018496	465.77193367946916	45.471	0.36717	45.322	45.148	45.515	-0.1488					17	10	2	0	0	0	0.024535	1	4385	4385		25.45	1.2474	1	280430			81891	419	57076	57169	90957	90957					0.05800783827965006
TVSLMGLPL	9	Unmodified	_TVSLMGLPL_					0	0	0		chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	chr7:40815803-40860316|321|17.55|0.3|5.87|+|0|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|66	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.770071	929.52559	0.52547	0.00024475	3.901	0.001817	4.4265	0.0020617	465.7716672565567	45.364	0.36597	45.408	45.214	45.58	0.04388	0.021902	-0.00028915	NaN	18.324	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223830			81892	419	57076	57169							0.05800783827965006
TVSLMKHLDL	10	Unmodified	_TVSLMKHLDL_					0	0	0		ENST00000345057.8_1_16:67188131-67188353:-|nuORF	ENST00000345057.8_1_16:67188131-67188353:-|nuORF	ENST00000345057.8_1_16:67188131-67188353:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	579.7399291992188	2	578.823366	1155.63218	-0.88118	-0.00051005	3.8244	0.0022136	2.9432	0.0017036	578.8255579679991	35.151	0.73058	34.964	34.721	35.452	-0.18675					46	18	4	0	0	0	0.03519	1	2649	2649		27.882	3.6795	1	865540			81893	12558	57077	57170	90958	90958					0.060589143224888176
TVSLPLKAV	9	Unmodified	_TVSLPLKAV_					0	0	0		ENSG00000126266|ENST00000246553|FFAR1	ENSG00000126266|ENST00000246553|FFAR1	ENSG00000126266|ENST00000246553|FFAR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2789611816406	2	464.29731	926.580068	-0.67178	-0.00031191	0.51704	0.00024006	-0.15474	-7.1846E-05	464.29735884215097	81.47	0.84692	81.339	80.936	81.783	-0.13075					39	20	3	0	0	0	0.023417	1	10092	10092		58.782	0	1	434070			81894	4194	57078	57171	90959	90959					0.11384118971045609
TVSMLPSHL	9	Unmodified	_TVSMLPSHL_					0	0	0			REV__ENSG00000112992|ENST00000344920|NNT	REV__ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7939453125	2	492.762778	983.511002	0.88391	0.00043556	-1.4249	-0.00070212	-0.54096	-0.00026656	492.7620239070714	63.127	0.72742	63.181	62.719	63.447	0.054104					34	18	2	0	0	0	0.024381	1	7263	7263		37.159	0	1	400290	+		81895	22035	57079	57172	90960	90960					0.018587116798244097
TVSPFGYTE	9	Unmodified	_TVSPFGYTE_					0	0	0			REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	REV__ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2084655761719	2	500.73474	999.454927	-0.076657	-3.8385E-05	-3.8814	-0.0019436	-3.9581	-0.0019819	500.7331923446572	43.201	0.50097	43.089	42.854	43.355	-0.11253					23	13	2	0	0	0	0.024477	1	3973	3973		27.882	3.6795	1	419810	+		81896	23344	57080	57173	90961	90961					-0.04482217955990109
TVSPIPFFN	9	Unmodified	_TVSPIPFFN_					0	0	0		nc|ENSG00000116675|O75061-3|DNAJC6;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7533264160156	2	511.271293	1020.52803	0.05833	2.9823E-05	-4.0015	-0.0020459	-3.9432	-0.0020161	511.2691701397247	46.014	0.51926	45.917	45.632	46.152	-0.096653					29	13	3	0	0	0	0.023596	1	4367	4367		63.306	0	1	363340			81897	3562	57081	57174	90962	90962					0.018589555572816607
TVSRVTPLA	9	Unmodified	_TVSRVTPLA_					0	0	0			REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF	REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2924499511719	2	472.282192	942.549831	0.31523	0.00014888	-2.0431	-0.0009649	-1.7278	-0.00081603	472.28056563715126	52.432	0.85089	52.432	52.236	53.086	0					45	21	3	0	0	0	0.024263	1	5681	5681		51.335	7.2187	1	246210	+		81898	34930	57082	57175	90963	90963					0.07625760305847962
TVSRVTPLA	9	Unmodified	_TVSRVTPLA_					0	0	0			REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF	REV__ENST00000551296.5_1_12:56330167-56330479:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.282192	942.549831	0.35526	0.00016778	-0.52106	-0.00024609	-0.1658	-7.8303E-05	472.2818173568414	52.371	0.58857	52.463	52.2	52.788	0.091938	0.048058	0.00019927	NaN	60.972	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476930	+		81899	34930	57082	57175							0.07625760305847962
TVSTVGISII	10	Unmodified	_TVSTVGISII_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2977294921875	2	495.297507	988.580462	-0.25367	-0.00012564	-0.56761	-0.00028114	-0.82128	-0.00040678	495.2972281531602	54.538	1.0702	54.538	54.214	55.284	0					125	30	6	0	0	0	0.17188	1	6022	6022		124.59	0	1	63653000			81900	5790	57083	57176	90964	90964					0.08571493900251426
TVSTVGISII	10	Unmodified	_TVSTVGISII_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.2969665527344	2	495.297507	988.580462	-0.047163	-2.336E-05	-0.52597	-0.00026051	-0.57314	-0.00028387	495.29723956209665	54.627	1.0767	54.476	54.156	55.232	-0.15036					123	30	6	0	0	0	0.27536	1	6041	6041		111.65	0	1	63112000			81901	5790	57083	57176	90965	90965					0.08571493900251426
TVSTVGISII	10	Unmodified	_TVSTVGISII_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.2979736328125	2	495.297507	988.580462	0.71523	0.00035425	-1.4039	-0.00069537	-0.68871	-0.00034112	495.29682218928275	54.345	1.0714	54.444	54.077	55.148	0.098011					121	30	6	0	0	0	0.23335	1	5927	5927		116.9	12.157	1	81215000			81902	5790	57083	57176	90966	90966					0.08571493900251426
TVTARPSSAL	10	Unmodified	_TVTARPSSAL_					0	0	0			REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	REV__nc|ENSG00000162391|Q8WW52-2|FAM151A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7830810546875	2	501.782556	1001.55056	-0.12673	-6.3592E-05	0.94722	0.0004753	0.82049	0.00041171	501.7831587693353	45.205	1.3016	45.249	44.858	46.16	0.04388					105	37	4	0	0	0	0.62431	1	4307	4307		74.255	0	1	6786900	+		81903	25435	57084	57177	90967	90967					0.04984554954910436
TVTDLRIR	8	Unmodified	_TVTDLRIR_					0	0	0		ENST00000477948.1_1_1:107866915-107871621:+|nuORF;nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1	ENST00000477948.1_1_1:107866915-107871621:+|nuORF	ENST00000477948.1_1_1:107866915-107871621:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	487.29052734375	2	487.293091	972.571629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.07	1	101.89	101.39	102.39	-0.17178								0	0	0	0.58353	1	12663	12663		49.442	0	1				81904	6967	57085	57178	90968	90968					0.0842456505440623
TVTFLPAIF	9	Unmodified	_TVTFLPAIF_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.76708984375	2	504.791861	1007.56917	-0.65168	-0.00032896	3.3139	0.0016728	2.6622	0.0013438	504.79246246906666	66.155	0.23949	65.904	65.685	65.925	-0.25112					6	5	2	0	0	0	0.024262	1	7540	7540		38.806	0	1	128430	+		81905	25610	57086	57179	90969	90969					0.0656871659675744
TVTGEMNGAEL	11	Unmodified	_TVTGEMNGAEL_					0	0	0		nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-3|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2796020507812	2	561.260796	1120.50704	0.42022	0.00023585	0.19592	0.00010996	0.61614	0.00034582	561.259897462339	84.881	0.33041	84.881	84.669	84.999	0					10	7	2	0	0	0	0.02479	1	10640	10640		70.816	12.034	1	77295			81906	18767	57087	57180	90970	90970					-0.048394226045502364
TVTGYILKRL	10	Unmodified	_TVTGYILKRL_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	583.2900390625	2	582.360973	1162.70739	-0.62491	-0.00036392	0.39225	0.00022843	-0.23266	-0.00013549	582.361080711886	71.399	0.84689	71.399	70.948	71.795	0					61	21	4	0	0	0	0.03519	1	8651	8651		25.574	0	1	1182100	+		81907	25924	57088	57181	90971	90971					0.13254839845239985
TVTHRLLLL	9	Unmodified	_TVTHRLLLL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.3424072265625	2	533.342584	1064.67061	-1.257	-0.00067041	1.2707	0.00067774	0.013744	7.33E-06	533.3431256649413	65.859	0.7722	65.646	65.421	66.194	-0.21327					43	18	3	0	0	0	0.56934	1	7556	7556		54.776	3.4409	1	1386700			81908	8440	57089	57182	90972	90972					0.14086588019335977
TVTHRREP	8	Unmodified	_TVTHRREP_					0	0	0		ENST00000247843.6_1_12:69753554-69753620:+|nuORF	ENST00000247843.6_1_12:69753554-69753620:+|nuORF	ENST00000247843.6_1_12:69753554-69753620:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.28973388671875	2	498.27269	994.530826	0.25078	0.00012496	3.7701	0.0018785	4.0209	0.0020035	498.2740864016059	50.917	0.57047	50.917	50.642	51.212	0					16	15	2	0	0	0	0.027866	1	5361	5361		35.618	0	1	140640			81909	11329	57090	57183	90973	90973					0.03334223734805164
TVTIIAQYKPE	11	Unmodified	_TVTIIAQYKPE_					0	0	0		nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4;nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-3|DLG4	nc|ENSG00000132535|P78352-3|DLG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.75042724609375	3	421.571211	1261.6918	-0.26866	-0.00011326	-1.222	-0.00051517	-1.4907	-0.00062843	421.90498948571707	41.88	0.40675	41.648	41.43	41.837	-0.23186					16	10	2	0	0	0	0.024816	1	3738	3738		16.53	8.8505	1	70776			81910	4617	57091	57184	90974	90974					0.07142508537504
TVTITVLDI	9	Unmodified	_TVTITVLDI_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3;FAT3|p.S3229Lfs*10|1|0.11|ENSG00000165323|chr11:92836615-92836624|CCATTGTGAA/-|frameshift_variant	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.79058837890625	2	487.792058	973.569563	0.43895	0.00021412	-0.57212	-0.00027908	-0.13317	-6.4961E-05	487.7917661397378	78.47	1.6991	78.278	77.933	79.632	-0.1921					129	40	5	0	0	0	0.35646	1	9733	9733		68.787	5.4806	1	10902000			81911	7399	57092	57185	90975	90975					0.08172091525955238
TVTIVYYGSD	10	Unmodified	_TVTIVYYGSD_					0	0	0			REV__ENSG00000214376|ENST00000409977|VSTM5	REV__ENSG00000214376|ENST00000409977|VSTM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.8037109375	2	559.274229	1116.53391	-0.19693	-0.00011014	0.94436	0.00052816	0.74744	0.00041802	559.274645264285	49.375	0.38389	49.192	48.921	49.305	-0.18206					17	9	2	0	0	0	0.03519	1	4919	4919		31.53	0	1	100260	+		81912	28778	57093	57186	90976	90976					-0.019699907217272994
TVTKADLET	9	Unmodified	_TVTKADLET_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.7331237792969	2	489.261122	976.507691	-0.43707	-0.00021384	0.89665	0.0004387	0.45958	0.00022486	489.2617273356261	22.753	0.59806	22.568	22.325	22.923	-0.18539					19	12	3	0	0	0	0.024405	1	862	862		27.882	1.1893	1	226770	+		81913	22341	57094	57187	90977	90977					0.018497401068088948
TVTKGTLTKVF	11	Unmodified	_TVTKGTLTKVF_					0	0	0			REV__UBA52|p.I13V|1|0.11|ENSG00000221983|chr19:18573337-18573337|A/G|missense_variant	REV__UBA52|p.I13V|1|0.11|ENSG00000221983|chr19:18573337-18573337|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8565063476562	2	597.858264	1193.70197	-0.69485	-0.00041542	-2.7318	-0.0016332	-3.4267	-0.0020487	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	1.0017	1	11828	11828		36.447	4.4919	1	4386000	+		81914	37747	57095	57188	90978	90978					0.11287116262747077
TVTLELPL	8	Unmodified	_TVTLELPL_					0	0	0			REV__ENSG00000221829|ENST00000378643|FANCG	REV__ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	443.2664489746094	2	443.268219	884.521884	0.62205	0.00027574	-3.5455	-0.0015716	-2.9234	-0.0012959	443.26654390952115	85.887	1.0799	85.737	85.451	86.531	-0.14967					73	24	4	0	0	0	1.0338	1	10415	10415		31.955	2.8053	1	1048700	+		81915	28829	57096	57189	90979	90979					0.07500437325779785
TVTLIILAV	9	Unmodified	_TVTLIILAV_					0	0	0		ENST00000531550.1_1_11:118007744-118012097:-|nuORF;nc|ENSG00000177098|Q8IWT1-3|SCN4B;nc|ENSG00000177098|Q8IWT1-2|SCN4B;ENSG00000177098|ENST00000324727|SCN4B	ENST00000531550.1_1_11:118007744-118012097:-|nuORF	ENST00000531550.1_1_11:118007744-118012097:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.78936767578125	2	471.815336	941.616119	-0.15802	-7.4558E-05	2.4842	0.0011721	2.3261	0.0010975	471.8165144706184	48.027	0.25491	47.874	47.702	47.957	-0.15301					12	7	2	0	0	0	0.024535	1	4844	4844		12.207	0	1	159780			81916	8706	57097	57190	90980	90980					0.14297576147907876
TVTNIFICS	9	Unmodified	_TVTNIFICS_					0	0	0		ENST00000512235.1_1_4:122261523-122301889:-|nuORF;ENSG00000186867|ENST00000394427|QRFPR	ENST00000512235.1_1_4:122261523-122301889:-|nuORF	ENST00000512235.1_1_4:122261523-122301889:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7692565917969	2	499.254785	996.495018	0.92118	0.0004599	3.4547	0.0017248	4.3758	0.0021847	499.2565693653528	19.828	0.39575	19.628	19.355	19.751	-0.2001					9	7	2	0	0	0	0.024523	1	455	455		21.96	0	1	26021			81917	9583	57098	57191	90981	90981					-0.003369945570739219
TVTPGLINL	9	Unmodified	_TVTPGLINL_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2793273925781	2	464.279118	926.543683	-0.67681	-0.00031423	1.125	0.00052231	0.44817	0.00020808	464.27950419386343	50.359	0.78941	50.359	49.986	50.775	0					58	23	3	0	0	0	0.35646	1	5267	5267		68.787	7.8149	1	4783400			81918	18644	57099	57192	90982	90982					0.07747242074310634
TVTPYKQR	8	Unmodified	_TVTPYKQR_					0	0	0			REV__ENST00000600065.5_1_19:15492734-15508647:-|nuORF	REV__ENST00000600065.5_1_19:15492734-15508647:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2736511230469	2	496.779816	991.545079	-0.39179	-0.00019463	2.913	0.0014471	2.5213	0.0012525	496.77974014407863	51.935	0.86998	51.788	51.577	52.447	-0.14735					46	23	4	0	0	0	0.027866	1	5614	5614		55.504	2.1528	1	839990	+		81919	35838	57100	57193	90983	90983					0.04896876163093111
TVTRGDPLKL	10	Unmodified	_TVTRGDPLKL_					0	0	0			REV__ENSG00000181786|ENST00000324436|ACTL9	REV__ENSG00000181786|ENST00000324436|ACTL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.3257446289062	2	550.327131	1098.63971	0.081598	4.4906E-05	0.30983	0.00017051	0.39143	0.00021541	550.3276499365805	98.961	0.92738	98.957	98.596	99.523	-0.0038834					49	20	3	0	0	0	1.1161	1	12618	12618		30.569	2.6866	1	255790	+		81920	27425	57101	57194	90984	90984					0.09433389914420331
TVTRTHALC	9	Unmodified	_TVTRTHALC_					0	0	0			REV__KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	REV__KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7880554199219	2	501.263476	1000.5124	-0.28291	-0.00014181	0.26952	0.0001351	-0.013394	-6.7142E-06	501.26215399865674	32.247	0.49894	32.31	32.003	32.502	0.062885					28	12	4	0	0	0	0.024323	1	2148	2148		44.117	0	1	399960	+		81921	25903	57102	57195	90985	90985					0.012163457685687717
TVTRWWTF	8	Unmodified	_TVTRWWTF_					0	0	0		ENST00000407431.5_1_22:26892730-26892817:-|nuORF	ENST00000407431.5_1_22:26892730-26892817:-|nuORF	ENST00000407431.5_1_22:26892730-26892817:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.7138671875	2	548.782359	1095.55016	-1.041	-0.00057126	-1.0648	-0.00058435	-2.1058	-0.0011556	548.7801454931376	44.289	0.33289	44.184	44.134	44.467	-0.10468					12	8	2	0	0	0	0.027866	1	4129	4129		24.203	12.692	1	45412			81922	13749	57103	57196	90986	90986					0.006211800256778588
TVTSLGTK	8	Unmodified	_TVTSLGTK_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.8631896972656	2	403.734543	805.454533	0.104	4.1989E-05	1.5666	0.0006325	1.6706	0.00067449	403.735228215132	27.612	0.6296	27.444	27.099	27.729	-0.16816					19	14	2	0	0	0	0.027866	1	1559	1559		23.042	0	1	69160	+		81923	19108	57104	57197	90987	90987					0.044024071148214716
TVTSLSVHI	9	Unmodified	_TVTSLSVHI_					0	0	0			REV__ENSG00000101890|ENST00000218006|GUCY2F	REV__ENSG00000101890|ENST00000218006|GUCY2F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.732177734375	2	478.7742	955.533846	-0.60877	-0.00029147	-0.8891	-0.00042568	-1.4979	-0.00071715	478.7738438585201	39.338	0.92544	39.115	38.497	39.422	-0.22311					46	24	3	0	0	0	0.024535	1	3294	3294		25.45	4.5032	1	475900	+		81924	21263	57105	57198	90988	90988					0.054300540689382615
TVTTIRNDL	9	Unmodified	_TVTTIRNDL_					0	0	0		nc|ENSG00000293419|Q7Z5A4|PRSS42P	nc|ENSG00000293419|Q7Z5A4|PRSS42P	nc|ENSG00000293419|Q7Z5A4|PRSS42P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2757568359375	2	516.787838	1031.56112	0.52042	0.00026895	3.2853	0.0016978	3.8057	0.0019667	516.7893758904402	88.954	0.63139	88.932	88.652	89.283	-0.021645					36	14	3	0	0	0	0.024495	1	11173	11173		26.693	1.1189	1	699960			81925	18846	57106	57199	90989	90989					0.04660537609311177
TVTTIRNDL	9	Unmodified	_TVTTIRNDL_					0	0	0		nc|ENSG00000293419|Q7Z5A4|PRSS42P	nc|ENSG00000293419|Q7Z5A4|PRSS42P	nc|ENSG00000293419|Q7Z5A4|PRSS42P	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.787838	1031.56112	-0.0034042	-1.7592E-06	3.6625	0.0018927	3.6591	0.001891	516.7894929257521	88.98	0.66857	88.849	88.528	89.197	-0.13111	-0.095135	2.9811E-05	NaN	19.997	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309820			81926	18846	57106	57199							0.04660537609311177
TVTTIRNDL	9	Unmodified	_TVTTIRNDL_					0	0	0		nc|ENSG00000293419|Q7Z5A4|PRSS42P	nc|ENSG00000293419|Q7Z5A4|PRSS42P	nc|ENSG00000293419|Q7Z5A4|PRSS42P	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.787838	1031.56112	0.20343	0.00010513	3.2693	0.0016895	3.4727	0.0017947	516.7893661492114	88.978	0.66565	88.84	88.566	89.231	-0.13762	-0.10438	-0.00037656	NaN	19.997	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334500			81927	18846	57106	57199							0.04660537609311177
TVTTLWFLN	9	Unmodified	_TVTTLWFLN_					0	0	0		ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.819091796875	2	547.797675	1093.5808	-0.91802	-0.00050289	-3.3501	-0.0018352	-4.2681	-0.0023381	547.7961215762723	44.011	0.59974	44.048	43.706	44.306	0.036903					41	16	4	0	0	0	0.024263	1	4122	4122		42.396	28.259	1	1280400			81928	9258	57107	57200	90990	90990					0.03774913620100051
TVTTTLKN	8	Unmodified	_TVTTTLKN_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2524719238281	2	439.2531	876.491647	0.31156	0.00013685	-1.6579	-0.00072826	-1.3464	-0.00059141	439.25231035470904	90.063	1.0299	90.046	89.541	90.571	-0.016708					62	24	4	0	0	0	1.0574	1	11340	11340		24.203	0	1	1995100			81929	4181	57108	57201	90991	90991					0.04846078660580133
TVTTTLKN	8	Unmodified	_TVTTTLKN_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2524108886719	2	439.2531	876.491647	0.44278	0.00019449	-1.6924	-0.0007434	-1.2496	-0.00054891	439.25224259140566	90.069	0.98615	90.082	89.55	90.537	0.013443					57	23	4	0	0	0	1.0574	1	11288	11288		23.042	0	1	2014300			81930	4181	57108	57201	90992	90992					0.04846078660580133
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7923278808594	2	487.792058	973.569563	-0.24082	-0.00011747	0.11959	5.8333E-05	-0.12124	-5.9139E-05	487.792085501976	78.306	1.7835	78.306	77.918	79.701	0					134	42	6	0	0	0	0.074956	2	9681	9670;9681		119.56	0	1	11242000			81931	137	57109	57202	90993;90994	90994					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7920227050781	2	487.792058	973.569563	0.43895	0.00021412	-0.57212	-0.00027908	-0.13317	-6.4961E-05	487.7917661397378	78.47	1.6991	78.278	77.933	79.632	-0.1921					129	40	5	0	0	0	0.08613	4	9671	9671;9682;9706;9719		115.46	9.0438	1	10902000			81932	137	57109	57202	90995;90996;90997;90998	90995					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.792236328125	2	487.792058	973.569563	-0.64793	-0.00031605	0.48175	0.00023499	-0.16618	-8.106E-05	487.79227441876844	78.361	1.7343	78.377	77.989	79.724	0.015907					129	41	5	0	0	0	0.013805	5	9616	9595;9605;9616;9628;9652		167.82	24.805	1	12051000			81933	137	57109	57202	90999;91000;91001;91002;91003	91001					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79229736328125	2	487.792058	973.569563	0.62547	0.0003051	-1.2919	-0.00063016	-0.6664	-0.00032506	487.79150646184695	96.915	0.93105	96.914	96.572	97.503	-3.0518E-05					42	20	3	0	0	0	0.4752	1	12277	12277		60.972	2.19	1	531480			81934	137	57109	57202	91004	91004					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.792058	973.569563	-0.30525	-0.0001489	-0.082134	-4.0065E-05	-0.38738	-0.00018896	487.79207931312675	78.543	0.51568	78.288	77.955	78.471	-0.25471	0.011113	-2.2524E-05	NaN	167.82	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284910			81935	137	57109	57202							0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.792058	973.569563	0.35196	0.00017168	-0.73798	-0.00035998	-0.38602	-0.0001883	487.7916958839596	78.435	0.73016	78.204	77.92	78.65	-0.23141	-0.072764	-0.00066235	NaN	167.82	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293690			81936	137	57109	57202							0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3;ASAP2-CPSF3|2|fusion;ASAP2-CPSF3|1|fusion;ASAP2-CPSF3|4|fusion;ASAP2-CPSF3|3|fusion	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.792058	973.569563	0.27505	0.00013417	-0.32899	-0.00016048	-0.053943	-2.6313E-05	487.7917742302336	78.364	1.1066	78.208	77.914	79.02	-0.15591	-0.068629	-0.00026335	NaN	167.82	44	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354460			81937	137	57109	57202							0.08172091525955238
TVTVKISQKN	10	Unmodified	_TVTVKISQKN_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.801025390625	2	559.332413	1116.65027	0.58204	0.00032555	2.0347	0.0011381	2.6168	0.0014636	559.3334921679743	86.738	0.51681	86.596	86.321	86.838	-0.14218					16	11	2	0	0	0	0.03519	1	10561	10561		58.23	0	1	79420			81938	7364	57110	57203	91005	91005					0.09661372568848492
TVTVNFER	8	Unmodified	_TVTVNFER_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.28497314453125	2	483.256174	964.497795	-0.79592	-0.00038464	0.28896	0.00013964	-0.50696	-0.00024499	483.256136242611	53.957	0.79528	53.821	53.531	54.326	-0.13617					61	24	4	0	0	0	0.027866	1	5786	5786		37.159	6.6555	1	1311100	+		81939	26412	57111	57204	91006	91006					0.01412596892100737
TVTVNFER	8	Unmodified	_TVTVNFER_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	483.256174	964.497795	-0.13464	-6.5064E-05	-0.2349	-0.00011352	-0.36954	-0.00017858	483.25589165950913	54.108	0.60661	53.863	53.625	54.231	-0.2453	0.0269	1.8837E-06	NaN	42.396	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011000	+		81940	26412	57111	57204							0.01412596892100737
TVTVNFER	8	Unmodified	_TVTVNFER_					0	0	0			REV__nc|ENSG00000169896|P11215-2|ITGAM	REV__nc|ENSG00000169896|P11215-2|ITGAM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	483.256174	964.497795	0.12482	6.032E-05	-0.68605	-0.00033154	-0.56123	-0.00027122	483.2556875073764	54.022	0.58022	53.824	53.588	54.168	-0.19739	-0.011894	-0.00043416	NaN	42.396	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1067600	+		81941	26412	57111	57204							0.01412596892100737
TVTVNPSNAD	10	Unmodified	_TVTVNPSNAD_					0	0	0			REV__sp|P03200|GP350_EBVB9EnvelopeglycoproteinGP350OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF1PE=1SV=1	REV__sp|P03200|GP350_EBVB9EnvelopeglycoproteinGP350OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BLLF1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2920227050781	2	509.246003	1016.47745	-0.63136	-0.00032152	4.1984	0.002138	3.567	0.0018165	509.2479884477174	64.924	0.71739	64.668	64.386	65.103	-0.25563					42	17	4	0	0	0	0.03519	1	7366	7366		40.778	0	1	1050400	+		81942	37536	57112	57205	91007	91007					-0.030126185583867482
TVVAVFSVSD	10	Unmodified	_TVVAVFSVSD_					0	0	0		ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.271240234375	2	512.27149	1022.52843	0.51992	0.00026634	-1.4352	-0.00073523	-0.91531	-0.00046889	512.2706158335453	106.37	1.4495	106.37	105.98	107.43	0					130	48	5	0	0	0	1.0271	1	13659	13659		42.396	9.5837	1	6752000			81943	3268	57113	57206	91008	91008					0.018063304864767815
TVVDADEIIV	10	Unmodified	_TVVDADEIIV_					0	0	0		nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	nc|ENSG00000131269|O75027-3|ABCB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.303955078125	2	537.289879	1072.56521	-0.089163	-4.7907E-05	0.69941	0.00037579	0.61025	0.00032788	537.2896995457079	69.111	0.37495	68.868	68.666	69.041	-0.24277					18	8	4	0	0	0	0.03519	1	8009	8009		44.117	0	1	141570			81944	4509	57114	57207	91009	91009					0.03182582312365412
TVVERWLI	8	Unmodified	_TVVERWLI_					0	0	0			REV__ENSG00000102878|ENST00000521374|HSF4	REV__ENSG00000102878|ENST00000521374|HSF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7723083496094	2	508.300384	1014.58622	0.041517	2.1103E-05	1.7387	0.0008838	1.7803	0.0009049	508.30137644323946	51.247	0.95157	51.247	50.92	51.871	0					63	26	3	0	0	0	0.027866	1	5525	5525		24.203	0	1	1843300	+		81945	21334	57115	57208	91010	91010					0.07950637202554844
TVVEVRSKP	9	Unmodified	_TVVEVRSKP_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.771728515625	2	507.800749	1013.58694	-1.0425	-0.0005294	1.2474	0.00063341	0.20482	0.00010401	507.8014042878442	51.631	0.45407	51.718	51.544	51.998	0.087006					20	12	2	0	0	0	0.024323	1	5442	5442		44.117	5.3107	1	2037500			81946	8726	57116	57209	91011	91011					0.08069431851617992
TVVEVRSKP	9	Unmodified	_TVVEVRSKP_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.800749	1013.58694	0.17392	8.8319E-05	-0.30106	-0.00015288	-0.12713	-6.4558E-05	507.8004134547812	51.758	1.0831	51.639	51.357	52.44	-0.11876	-0.058297	-0.001153	NaN	25.574	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1472100			81947	8726	57116	57209							0.08069431851617992
TVVEVRSKP	9	Unmodified	_TVVEVRSKP_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.800749	1013.58694	-2.133	-0.0010831	1.7144	0.00087059	-0.41854	-0.00021253	507.8015084411594	52.018	0.88042	51.749	51.474	52.354	-0.26903	0.051019	0.00089398	NaN	25.574	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1450200			81948	8726	57116	57209							0.08069431851617992
TVVEVRSKP	9	Unmodified	_TVVEVRSKP_					0	0	0		nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF	nc|ENSG00000177302|Q13472-3|TOP3A	nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	507.800749	1013.58694	0.25539	0.00012969	-0.62242	-0.00031607	-0.36703	-0.00018638	507.8003324813896	51.877	0.90443	51.693	51.449	52.354	-0.18405	-0.0048034	-0.0014793	NaN	25.574	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1264700			81949	8726	57116	57209							0.08069431851617992
TVVGKTTVI	9	Unmodified	_TVVGKTTVI_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.2407531738281	2	459.286943	916.559333	0.12019	5.5203E-05	-0.16441	-7.5511E-05	-0.044216	-2.0308E-05	459.28664452377114	54.507	0.48967	54.356	54.084	54.574	-0.15036					21	13	2	0	0	0	0.024477	1	5921	5921		20.947	0	1	332410	+		81950	24260	57117	57210	91012	91012					0.09771528591352308
TVVGNPRSW	9	Unmodified	_TVVGNPRSW_					0	0	0		nc|ENSG00000100926|O15321-2|TM9SF1;ENSG00000100926|ENST00000261789|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.26959228515625	2	508.269616	1014.52468	-0.66094	-0.00033594	-0.11891	-6.044E-05	-0.77985	-0.00039638	508.269456563627	44.965	0.97485	44.713	44.248	45.223	-0.25252					64	25	3	0	0	0	0.28047	3	4217	4206;4217;4230		78.264	28.239	1	2228200			81951	18129	57118	57211	91013;91014;91015	91014					0.017997055032651588
TVVGNPRSW	9	Unmodified	_TVVGNPRSW_					0	0	0		nc|ENSG00000100926|O15321-2|TM9SF1;ENSG00000100926|ENST00000261789|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	nc|ENSG00000100926|O15321-2|TM9SF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2689208984375	2	508.269616	1014.52468	-0.74136	-0.00037681	-0.017556	-8.9229E-06	-0.75891	-0.00038573	508.2694877126544	44.945	0.85478	44.733	44.362	45.217	-0.21109					60	22	3	0	0	0	0.40693	2	4212	4212;4224		65.465	5.1714	1	2298500			81952	18129	57118	57211	91016;91017	91016					0.017997055032651588
TVVIILCII	9	Unmodified	_TVVIILCII_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.27838134765625	2	493.819564	985.624575	1.1123	0.00054927	2.4943	0.0012317	3.6066	0.001781	493.8206302806648	19.978	0.48049	19.778	19.603	20.084	-0.2001					16	9	3	0	0	0	0.024466	1	514	514		33.516	6.7195	1	134420	+		81953	23804	57119	57212	91018	91018					0.13118806792863325
TVVKFWLI	8	Unmodified	_TVVKFWLI_					0	0	0			REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.78167724609375	2	503.310221	1004.60589	-0.81832	-0.00041187	-4.138	-0.0020827	-4.9563	-0.0024946	503.3083766322699	47.367	0.59047	47.426	47.179	47.769	0.059093					55	17	5	0	0	0	0.027866	1	4729	4729		18.324	0	1	1158200	+		81954	31970	57120	57213	91019	91019					0.10377013213314967
TVVKRKGR	8	Unmodified	_TVVKRKGR_					0	0	0		ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	ENST00000490957.5_1_7:11013950-11101713:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2817687988281	2	472.311618	942.608683	-0.2187	-0.0001033	2.3039	0.0010882	2.0852	0.00098488	472.31272483337113	47.49	0.3054	47.303	47.084	47.389	-0.18684					10	7	2	0	0	0	0.027866	1	4614	4614		14.137	0	1	70782			81955	2789	57121	57214	91020	91020					0.13508281390852517
TVVKVTPDL	9	Unmodified	_TVVKVTPDL_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.29241943359375	2	486.292225	970.569897	0.64364	0.00031299	-0.43265	-0.00021039	0.21099	0.0001026	486.2916858716044	55.557	0.61007	55.557	55.353	55.963	0					42	16	4	0	0	0	0.45795	1	6143	6143		62.107	3.8775	1	2616800			81956	8023	57122	57215	91021	91021					0.08343511245811897
TVVKVTPDL	9	Unmodified	_TVVKVTPDL_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.292225	970.569897	-0.64238	-0.00031239	1.9902	0.00096783	1.3478	0.00065544	486.29260239335156	55.663	0.30016	55.447	55.301	55.602	-0.21551	-0.054952	0.0012721	NaN	62.107	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174660			81957	8023	57122	57215							0.08343511245811897
TVVLAGGSTLF	11	Unmodified	_TVVLAGGSTLF_					0	0	0		nc|ENSG00000288649|Q5JWF8|ACTL10	nc|ENSG00000288649|Q5JWF8|ACTL10	nc|ENSG00000288649|Q5JWF8|ACTL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7562255859375	2	532.802957	1063.59136	0.3745	0.00019954	-0.57022	-0.00030381	-0.19572	-0.00010428	532.8024749682892	58.588	0.89035	58.346	58.086	58.977	-0.24166					41	21	3	0	0	0	0.024756	1	6503	6503		36.447	8.3653	1	1788800			81958	18820	57123	57216	91022	91022					0.062108962745242025
TVVLEYVSL	9	Unmodified	_TVVLEYVSL_					0	0	0			REV__nc|ENSG00000204970|Q9Y5I3-2|PCDHA1	REV__nc|ENSG00000204970|Q9Y5I3-2|PCDHA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.3059387207031	2	511.792058	1021.56956	0.316	0.00016173	2.7035	0.0013836	3.0195	0.0015454	512.2953535539855	65.976	0.23026	65.976	65.875	66.105	0					6	4	2	0	0	0	0.024405	1	7848	7848		53.351	5.4358	1	118980	+		81959	28650	57124	57217	91023	91023					0.059640915259592475
TVVLKIKN	8	Unmodified	_TVVLKIKN_					0	0	0			REV__nc|ENSG00000086475|P49903-2|SEPHS1	REV__nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.8049011230469	2	457.805303	913.596052	-0.4582	-0.00020977	-0.02629	-1.2036E-05	-0.48449	-0.0002218	457.80510503900206	23.104	0.83019	22.921	22.602	23.432	-0.18319					38	18	4	0	0	0	0.95679	1	869	869		44.117	0	1	880610	+		81960	20772	57125	57218	91024	91024					0.13579825207921203
TVVPDSARV	9	Unmodified	_TVVPDSARV_					0	0	0		ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2927551269531	2	472.263999	942.513445	0.57568	0.00027187	-1.7228	-0.00081363	-1.1472	-0.00054176	472.2632787523087	49.679	0.61136	49.679	49.473	50.084	0					37	16	3	0	0	0	0.024263	1	5216	5216		34.173	0	1	429750			81961	16748	57126	57219	91025	91025					0.03988883409135724
TVVPESDSNSQ	11	Unmodified	_TVVPESDSNSQ_					0	0	0		ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	580.8302612304688	2	581.764757	1161.51496	-1.3167	-0.00076598	-1.4699	-0.00085512	-2.7865	-0.0016211	581.7638567340277	48.254	0.66899	48.101	47.764	48.433	-0.15301					28	19	2	0	0	0	0.02475	1	4827	4827		42.864	8.6917	1	84617			81962	1449	57127	57220	91026	91026					-0.05933572083426952
TVVPESDSNSQ	11	Unmodified	_TVVPESDSNSQ_					0	0	0		ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	581.764757	1161.51496	-0.49632	-0.00028874	-1.6025	-0.00093225	-2.0988	-0.001221	581.7636722602213	47.898	0.97981	47.801	47.277	48.257	-0.097553	-0.068225	0.00011084	NaN	32.751	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281530			81963	1449	57127	57220							-0.05933572083426952
TVVPESDSNSQ	11	Unmodified	_TVVPESDSNSQ_					0	0	0		ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.764757	1161.51496	-1.4958	-0.00087018	-0.9362	-0.00054465	-2.432	-0.0014148	581.7639214305484	48.092	1.1227	47.816	47.492	48.615	-0.27598	-0.0535	0.00088604	NaN	32.751	44	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216590			81964	1449	57127	57220							-0.05933572083426952
TVVPESDSNSQ	11	Unmodified	_TVVPESDSNSQ_					0	0	0		ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	ENSG00000071243|ENST00000315870|ING3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.764757	1161.51496	-0.30774	-0.00017903	-2.2833	-0.0013284	-2.5911	-0.0015074	581.7635550407991	47.946	1.014	47.759	47.389	48.403	-0.18684	-0.11031	-0.00068139	NaN	32.751	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208440			81965	1449	57127	57220							-0.05933572083426952
TVVQAALPLF	10	Unmodified	_TVVQAALPLF_					0	0	0		ENST00000371602.8_1_20:49506362-49506494:-|nuORF	ENST00000371602.8_1_20:49506362-49506494:-|nuORF	ENST00000371602.8_1_20:49506362-49506494:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.8197021484375	2	529.815867	1057.61718	-0.14063	-7.4508E-05	0.43309	0.00022946	0.29246	0.00015495	529.8166765876556	68.381	0.89134	68.12	67.814	68.706	-0.26166					48	21	4	0	0	0	0.77808	1	7917	7917		62.107	3.3255	1	7798900			81966	13004	57128	57221	91027	91027					0.09067790516792229
TVVQAALPLF	10	Unmodified	_TVVQAALPLF_					0	0	0		ENST00000371602.8_1_20:49506362-49506494:-|nuORF	ENST00000371602.8_1_20:49506362-49506494:-|nuORF	ENST00000371602.8_1_20:49506362-49506494:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.8197631835938	2	529.815867	1057.61718	0.020601	1.0915E-05	0.36408	0.0001929	0.38468	0.00020381	529.8165947976862	68.333	0.72113	68.099	67.797	68.518	-0.23376					48	17	5	0	0	0	0.77808	2	7918	7918;7931		62.107	7.3851	1	8218700			81967	13004	57128	57221	91028;91029	91028					0.09067790516792229
TVVQAALPLF	10	Unmodified	_TVVQAALPLF_					0	0	0		ENST00000371602.8_1_20:49506362-49506494:-|nuORF	ENST00000371602.8_1_20:49506362-49506494:-|nuORF	ENST00000371602.8_1_20:49506362-49506494:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8289184570312	2	529.815867	1057.61718	0.46938	0.00024868	-0.088493	-4.6885E-05	0.38088	0.0002018	529.8163194576168	68.315	0.80464	68.085	67.755	68.559	-0.23047					38	19	3	0	0	0	0.55353	2	7922	7906;7922		82.241	18.033	1	7904400			81968	13004	57128	57221	91030;91031	91031					0.09067790516792229
TVVQEQLYL	9	Unmodified	_TVVQEQLYL_					0	0	0			REV__ENST00000411526.5_1_7:154736168-154736312:+|nuORF	REV__ENST00000411526.5_1_7:154736168-154736312:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.7642211914062	2	546.800414	1091.58628	-0.70162	-0.00038365	0.37351	0.00020424	-0.32811	-0.00017941	546.8005887920632	67.304	0.48243	67.328	67.112	67.595	0.023911					32	11	4	0	0	0	0.022587	1	7968	7968		108.09	0	1	1333200	+		81969	31983	57129	57222	91032	91032					0.04414592411899321
TVVQVEVPK	9	Unmodified	_TVVQVEVPK_					0	0	0			REV__nc|ENSG00000133627|Q9P1U1-2|ACTR3B	REV__nc|ENSG00000133627|Q9P1U1-2|ACTR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.789794921875	2	499.797675	997.580796	-0.43557	-0.0002177	0.62656	0.00031315	0.19098	9.5454E-05	499.797621098677	92.429	0.66008	92.421	92.198	92.858	-0.0082932					31	15	3	0	0	0	0.024495	1	11736	11736		26.693	0	1	327650	+		81970	23382	57130	57223	91033	91033					0.08190913620092033
TVVRQGENITL	11	Unmodified	_TVVRQGENITL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;nc|ENSG00000113721|P09619-2|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.7347412109375	3	410.56646	1228.67755	-0.21761	-8.9343E-05	0.75563	0.00031023	0.53802	0.00022089	410.5668643674405	31.137	0.40498	30.952	30.618	31.023	-0.18503					14	9	2	0	0	0	0.024752	1	2017	2017		22.562	0	1	73742			81971	3322	57131	57224	91034	91034					0.0723585610921873
TVVRWMTL	8	Unmodified	_TVVRWMTL_					0	0	0			REV__ENST00000348370.8_1_15:59359032-59359191:+|nuORF	REV__ENST00000348370.8_1_15:59359032-59359191:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.3050537109375	2	503.281137	1004.54772	0.067578	3.4011E-05	0.59452	0.00029921	0.6621	0.00033322	503.28115315144197	68.289	0.77422	67.997	67.743	68.517	-0.29266					35	19	3	0	0	0	0.027866	1	8178	8178		73.975	17.254	1	386700	+		81972	30714	57132	57225	91035	91035					0.04563008296406679
TVVSVAKE	8	Unmodified	_TVVSVAKE_					0	0	0		nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8919677734375	2	416.742368	831.470183	-0.85038	-0.00035439	1.8861	0.00078601	1.0357	0.00043162	416.7432823935217	38.135	0.43316	37.914	37.686	38.119	-0.22149					20	12	2	0	0	0	0.027866	1	3103	3103		25.574	3.6142	1	296900			81973	18674	57133	57226	91036	91036					0.047706936318604676
TVVSVAKE	8	Unmodified	_TVVSVAKE_					0	0	0		nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	nc|ENSG00000205955|Q58FG0|HSP90AA5P	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	416.742368	831.470183	-0.48683	-0.00020288	0.72421	0.00030181	0.23738	9.8926E-05	416.74275730829504	38.173	0.51197	37.954	37.571	38.083	-0.21849	0.020306	-0.00068435	NaN	25.574	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309260			81974	18674	57133	57226							0.047706936318604676
TVVVFAVIV	9	Unmodified	_TVVVFAVIV_					0	0	0		ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.77825927734375	2	473.802229	945.589904	0.035071	1.6617E-05	0.37224	0.00017637	0.40731	0.00019299	473.80237408835063	23.195	0.16456	23.134	23.026	23.19	-0.060862					5	3	2	0	0	0	0.024541	1	879	879		23.042	0	1	13067			81975	13138	57134	57227	91037	91037					0.11493306976410622
TVVVNRKP	8	Unmodified	_TVVVNRKP_					0	0	0			REV__C12orf10-NFX1|1|fusion;REV__ENSG00000086102|ENST00000379540|NFX1	REV__C12orf10-NFX1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2587890625	2	456.784902	911.55525	-0.31166	-0.00014236	-0.13444	-6.1409E-05	-0.4461	-0.00020377	456.7847768404066	28.025	1.2155	28.021	27.616	28.832	-0.0042019					60	29	4	0	0	0	0.027866	1	1598	1598		30.504	1.3541	1	1066500	+		81976	19226;20767	57135	57228	91038	91038					0.09593483888318133
TVVVRTYVE	9	Unmodified	_TVVVRTYVE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant;TTN|p.C8681Vfs*2|1|0.32|ENSG00000155657|chr2:178713143-178713143|T/-|frameshift_variant;TTN|p.S7471Qfs*14|1|0.11|ENSG00000155657|chr2:178720397-178720401|CAGAG/-|frameshift_variant;TTN|p.L5237Rfs*2|1|0.21|ENSG00000155657|chr2:178732308-178732308|A/-|frameshift_variant;TTN|p.L4812Vfs*8|1|0.15|ENSG00000155657|chr2:178734435-178734439|ACAAG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2587890625	2	533.300581	1064.58661	-0.51219	-0.00027315	3.0656	0.0016349	2.5534	0.0013617	533.3023435027341	69.31	0.78725	69.087	68.645	69.432	-0.22245					24	18	2	0	0	0	0.024263	1	8080	8080		42.396	15.703	1	235730			81977	6479;18400	57136	57229	91039	91039					0.056900121317767116
TVVWRPALV	9	Unmodified	_TVVWRPALV_					0	0	0			REV__ENSG00000166682|ENST00000299882|TMPRSS5	REV__ENSG00000166682|ENST00000299882|TMPRSS5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.766357421875	2	520.816202	1039.61785	0.09126	4.753E-05	2.1642	0.0011271	2.2554	0.0011747	520.8175824969592	47.767	0.32726	47.491	47.268	47.595	-0.27598					5	3	2	0	0	0	0.024294	1	4656	4656		55.504	9.5523	1	265130	+		81978	26043	57137	57230	91040	91040					0.09962629956498859
TVWASTLPR	9	Unmodified	_TVWASTLPR_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7089233398438	2	515.787641	1029.56073	-0.70937	-0.00036589	-3.4023	-0.0017548	-4.1116	-0.0021207	515.7857659436187	29.808	0.71836	29.636	29.284	30.002	-0.17258					39	16	3	0	0	0	0.024457	1	1859	1859		45.952	13.997	1	761040			81979	6240	57138	57231	91041	91041					0.04713162680127425
TVWSVIKSI	9	Unmodified	_TVWSVIKSI_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.8179931640625	2	516.808042	1031.60153	0.10504	5.4283E-05	-2.6323	-0.0013604	-2.5273	-0.0013061	517.309087441418	21.586	0.14441	21.396	21.275	21.42	-0.19072					4	2	2	0	0	0	0.024405	1	679	679		44.117	12.162	1	7566.5			81980	2423	57139	57232	91042	91042					0.08699503999741864
TVYISIRVP	9	Unmodified	_TVYISIRVP_					0	0	0			REV__ENSG00000268089|ENST00000598523|GABRQ	REV__ENSG00000268089|ENST00000598523|GABRQ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.309814453125	2	524.313492	1046.61243	-1.1636	-0.00061009	0.83226	0.00043636	-0.33133	-0.00017372	524.3139743647313	73.243	1.977	73.243	72.74	74.717	0					163	48	5	0	0	0	0.75397	1	9014	9014		42.396	5.237	1	37349000	+		81981	29152	57140	57233	91043	91043					0.09098906374038052
TVYPKPEEW	9	Unmodified	_TVYPKPEEW_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.7839965820312	2	574.784764	1147.55498	-0.24961	-0.00014347	-0.15592	-8.962E-05	-0.40553	-0.00023309	574.7846923137164	52.602	1.2122	52.475	51.93	53.143	-0.12705					105	30	5	0	0	0	0.51687	2	5459	5459;5509		58.23	3.7844	1	3201900			81982	2451	57141	57234	91044;91045	91044					-0.012899806221867038
TVYPKPEEW	9	Unmodified	_TVYPKPEEW_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.7847290039062	2	574.784764	1147.55498	0.084397	4.851E-05	-0.6538	-0.00037579	-0.5694	-0.00032729	574.784504939247	52.883	1.1621	52.625	52.1	53.262	-0.25839					99	29	5	0	0	0	0.34489	4	5477	5477;5487;5502;5527		69.628	16.691	1	2551400			81983	2451	57141	57234	91046;91047;91048;91049	91046					-0.012899806221867038
TVYPKPEEW	9	Unmodified	_TVYPKPEEW_					0	0	0		ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF	ENSG00000102978|ENST00000219252|POLR2C	ENSG00000102978|ENST00000219252|POLR2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7846069335938	2	574.784764	1147.55498	-0.23714	-0.00013631	-0.38716	-0.00022253	-0.6243	-0.00035884	574.784734892199	52.774	1.026	52.584	51.993	53.019	-0.18982					91	25	5	0	0	0	0.37611	2	5481	5481;5495		67.494	12.717	1	2631100			81984	2451	57141	57234	91050;91051	91050					-0.012899806221867038
TVYRALSIV	9	Unmodified	_TVYRALSIV_					0	0	0		ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.3057861328125	2	511.305667	1020.59678	0.39735	0.00020317	-0.95181	-0.00048666	-0.55446	-0.0002835	511.3051399281556	65.894	0.90424	65.894	65.358	66.262	0					70	23	4	0	0	0	0.29158	1	7812	7812		76.774	4.8967	1	14132000			81985	13577	57142	57235	91052	91052					0.08730619857010424
TVYRALSIV	9	Unmodified	_TVYRALSIV_					0	0	0		ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.305908203125	2	511.305667	1020.59678	-0.21139	-0.00010808	-0.35487	-0.00018145	-0.56626	-0.00028953	511.3054507063064	66.245	0.89368	65.963	65.387	66.281	-0.28148					66	23	4	0	0	0	0.12602	1	7853	7853		104.75	6.1172	1	13220000			81986	13577	57142	57235	91053	91053					0.08730619857010424
TVYWMELFSL	10	Unmodified	_TVYWMELFSL_					0	0	0			REV__ENSG00000197532|ENST00000641622|OR6Y1	REV__ENSG00000197532|ENST00000641622|OR6Y1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.9064025878906	3	430.214259	1287.62095	0.24763	0.00010654	0.81244	0.00034952	1.0601	0.00045606	430.214467332245	38.701	0.27977	38.476	38.32	38.6	-0.2257					9	6	2	0	0	0	0.03519	1	3191	3191		19.263	6.3052	1	42218	+		81987	28312	57143	57236	91054	91054					-0.011359077716406318
TWALRTAST	9	Unmodified	_TWALRTAST_					0	0	0			REV__nc|ENSG00000108639|O43760-2|SYNGR2	REV__nc|ENSG00000108639|O43760-2|SYNGR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.77313232421875	2	503.769448	1005.52434	0.42699	0.00021511	1.2054	0.00060726	1.6324	0.00082237	503.7698903371699	59.321	0.40955	59.133	59.06	59.469	-0.18795					13	9	2	0	0	0	0.024397	1	6555	6555		31.53	22.347	1	195270	+		81988	36555	57144	57237	91055	91055					0.021802857834245515
TWALRTAST	9	Unmodified	_TWALRTAST_					0	0	0			REV__nc|ENSG00000108639|O43760-2|SYNGR2	REV__nc|ENSG00000108639|O43760-2|SYNGR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.769448	1005.52434	0.39398	0.00019847	0.69484	0.00035004	1.0888	0.00054851	503.7690935399262	59.322	0.4434	59.141	58.991	59.435	-0.18133	-0.008806	-0.00029285	NaN	31.53	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141440	+		81989	36555	57144	57237							0.021802857834245515
TWALRTAST	9	Unmodified	_TWALRTAST_					0	0	0			REV__nc|ENSG00000108639|O43760-2|SYNGR2	REV__nc|ENSG00000108639|O43760-2|SYNGR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.769448	1005.52434	0.12507	6.3007E-05	0.88458	0.00044563	1.0097	0.00050863	503.7696278249715	59.423	0.28581	59.175	59.05	59.335	-0.24841	0.0254	-0.00010168	NaN	31.53	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127960	+		81990	36555	57144	57237							0.021802857834245515
TWEKPQGV	8	Unmodified	_TWEKPQGV_					0	0	0			REV__ENST00000554154.1_1_17:26926809-26943310:+|nuORF	REV__ENST00000554154.1_1_17:26926809-26943310:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7453918457031	2	472.745442	943.476331	-0.42823	-0.00020244	0.26307	0.00012437	-0.16516	-7.8077E-05	472.74541446500973	48.817	0.75646	48.884	48.588	49.345	0.066795					51	20	3	0	0	0	0.74904	1	4950	4950		63.306	3.0123	1	3583600	+		81991	34983	57145	57238	91056	91056					0.0023321186339444466
TWESSEILY	9	Unmodified	_TWESSEILY_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2686767578125	2	564.266404	1126.51826	0.60711	0.00034257	2.3222	0.0013103	2.9293	0.0016529	564.2675186279926	59.715	0.88198	59.539	59.078	59.96	-0.1761					48	22	4	0	0	0	0.70186	1	6620	6620		45.952	1.8352	1	1741800			81992	7447	57146	57239	91057	91057					-0.03994277238734867
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2732543945312	2	534.274032	1066.53351	-0.14	-7.4799E-05	0.22142	0.0001183	0.081419	4.35E-05	534.2740868481011	88.34	0.91614	88.34	87.767	88.683	0					66	21	4	0	0	0	0.17455	4	11123	11123;11133;11158;11171		94.006	27.577	1	2083400	+		81993	22970	57147	57240	91058;91059;91060;91061	91058					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2734375	2	534.274032	1066.53351	-0.20414	-0.00010907	0.44312	0.00023675	0.23898	0.00012768	534.2741724740465	88.998	0.83987	88.998	88.683	89.523	0					49	19	3	0	0	0	0.17455	3	11206	11206;11217;11230		94.006	22.711	1	2646900	+		81994	22970	57147	57240	91062;91063;91064	91062					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2734985351562	2	534.274032	1066.53351	-0.54432	-0.00029082	0.63431	0.00033889	0.089985	4.8077E-05	534.2742411748468	94.591	0.77688	94.591	94.402	95.179	0					41	17	3	0	0	0	0.25032	2	12035	12035;12048		82.305	18.999	1	862110	+		81995	22970	57147	57240	91065;91066	91065					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2733154296875	2	534.274032	1066.53351	0.18205	9.7264E-05	-0.11936	-6.377E-05	0.062689	3.3493E-05	534.2738870612465	88.312	0.86971	88.285	87.776	88.646	-0.027657					60	20	4	0	0	0	0.13494	3	11124	11077;11088;11124		102.77	17.16	1	2250800	+		81996	22970	57147	57240	91067;91068;91069	91069					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2738037109375	2	534.274032	1066.53351	0.19837	0.00010599	0.074156	3.962E-05	0.27253	0.00014561	534.273949039214	88.965	1.0103	88.944	88.61	89.62	-0.021645					63	23	4	0	0	0	0.11848	3	11182	11171;11182;11195		106.42	21.056	1	2525600	+		81997	22970	57147	57240	91070;91071;91072	91071					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2739868164062	2	534.274032	1066.53351	-0.49327	-0.00026354	0.51052	0.00027276	0.017247	9.2147E-06	534.2740558165776	94.518	0.85628	94.518	94.228	95.085	-0.00022888					38	17	3	0	0	0	0.18915	1	11994	11994		90.777	16.802	1	772030	+		81998	22970	57147	57240	91073	91073					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2731323242188	2	534.274032	1066.53351	0.12787	6.8318E-05	-0.12785	-6.8308E-05	1.7879E-05	9.5521E-09	534.273863395338	88.391	0.92344	88.409	87.832	88.755	0.018555					65	21	4	0	0	0	0.049585	4	11095	11058;11070;11082;11095		128.86	54.606	1	2038900	+		81999	22970	57147	57240	91074;91075;91076;91077	91077					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2735595703125	2	534.274032	1066.53351	-0.12828	-6.8538E-05	0.38207	0.00020413	0.25379	0.00013559	534.2740949011198	89.036	0.96481	89.052	88.753	89.717	0.015907					62	22	4	0	0	0	0.18915	1	11162	11162		90.777	11.326	1	2617000	+		82000	22970	57147	57240	91078	91078					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2742919921875	2	534.274032	1066.53351	-0.67903	-0.00036279	0.7319	0.00039104	0.052873	2.8248E-05	534.2742772822983	94.675	0.73308	94.679	94.363	95.096	0.0041199					29	16	2	0	0	0	0.33245	1	11976	11976		71.296	0	1	918130	+		82001	22970	57147	57240	91079	91079					0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	534.274032	1066.53351	-0.20414	-0.00010907	0.44312	0.00023675	0.23898	0.00012768	534.2741724740465	88.998	0.83987	88.998	88.683	89.523	0	0.076826	9.4207E-05	NaN	106.42	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2646900	+		82002	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	534.274032	1066.53351	-0.54432	-0.00029082	0.63431	0.00033889	0.089985	4.8077E-05	534.2742411748468	94.591	0.77688	94.591	94.402	95.179	0	0.11614	-8.2143E-05	NaN	90.777	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	862110	+		82003	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	534.274032	1066.53351	0.19837	0.00010599	0.074156	3.962E-05	0.27253	0.00014561	534.273949039214	88.965	1.0103	88.944	88.61	89.62	-0.021645	0.022407	-0.00030005	NaN	106.42	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2525600	+		82004	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	534.274032	1066.53351	-0.49327	-0.00026354	0.51052	0.00027276	0.017247	9.2147E-06	534.2740558165776	94.518	0.85628	94.518	94.228	95.085	-0.00022888	0.043034	-0.00021442	NaN	90.777	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772030	+		82005	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.274032	1066.53351	-0.73825	-0.00039443	2.677	0.0014303	1.9388	0.0010358	534.2746961943939	88.983	0.49763	88.813	88.546	89.044	-0.17054	-0.10868	0.0024812	NaN	106.42	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95364	+		82006	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.274032	1066.53351	-0.84005	-0.00044882	1.6332	0.00087259	0.79318	0.00042377	534.2752542355302	94.505	0.8428	94.367	94.051	94.894	-0.13779	-0.10832	0.00098525	NaN	90.777	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288010	+		82007	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.274032	1066.53351	-0.51483	-0.00027506	1.133	0.00060536	0.61822	0.0003303	534.2745694623911	88.978	0.42291	88.846	88.57	88.993	-0.13134	-0.075184	0.00083142	NaN	106.42	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118060	+		82008	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.274032	1066.53351	-0.016544	-8.839E-06	1.0727	0.00057312	1.0562	0.00056428	534.2748225517636	94.455	0.71902	94.333	94.18	94.899	-0.12215	-0.14259	0.00038631	NaN	90.777	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341060	+		82009	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.274032	1066.53351	-0.23927	-0.00012783	0.91546	0.00048911	0.67619	0.00036127	534.27463678114	89.013	0.6676	88.875	88.44	89.107	-0.13762	-0.045867	0.00059892	NaN	106.42	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101460	+		82010	22970	57147	57240							0.0029063434908493946
TWFGLETTL	9	Unmodified	_TWFGLETTL_					0	0	0			REV__nc|ENSG00000128276|O75679-2|RFPL3	REV__nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.274032	1066.53351	-0.55033	-0.00029403	0.89198	0.00047656	0.34165	0.00018253	534.2746034334177	94.51	0.76079	94.363	94.169	94.929	-0.14771	-0.1126	0.00019319	NaN	90.777	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265240	+		82011	22970	57147	57240							0.0029063434908493946
TWGGLLPVI	9	Unmodified	_TWGGLLPVI_					0	0	0		ENSG00000197594|ENST00000647893|ENPP1	ENSG00000197594|ENST00000647893|ENPP1	ENSG00000197594|ENST00000647893|ENPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.29986572265625	2	478.284203	954.553853	0.11264	5.3875E-05	-4.0236	-0.0019244	-3.9109	-0.0018705	478.28212482023156	73.087	0.90479	73.087	72.533	73.438	0					44	22	3	0	0	0	0.023775	1	8859	8859		68.485	12.98	1	747620			82012	10021	57148	57241	91080	91080					0.07475849799561729
TWGSRTPIF	9	Unmodified	_TWGSRTPIF_					0	0	0		ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.78125	2	532.779816	1063.54508	-0.28328	-0.00015093	3.8294	0.0020402	3.5462	0.0018893	532.7811873664854	59.77	3.5685	59.522	58.576	62.145	-0.24841					178	89	5	0	0	0	0.25032	1	6588	6588		82.305	5.4584	1	2682700			82013	16433	57149	57242	91081	91081					0.01584876163087756
TWILGILHY	9	Unmodified	_TWILGILHY_					0	0	0			REV__SLC44A3|p.W380C|1|0.31|ENSG00000143036|chr1:94857402-94857402|G/C|missense_variant	REV__SLC44A3|p.W380C|1|0.31|ENSG00000143036|chr1:94857402-94857402|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2100219726562	2	558.316035	1114.61752	-0.48992	-0.00027353	3.7894	0.0021157	3.2995	0.0018421	558.3184739445848	35.425	0.35112	35.213	34.963	35.314	-0.21246					11	8	2	0	0	0	0.024183	1	2656	2656		71.378	5.5747	1	54410	+		82014	24193	57150	57243	91082	91082					0.06479210236670951
TWLLSYLI	8	Unmodified	_TWLLSYLI_					0	0	0			REV__ENST00000406768.1_1_14:73685932-73685974:+|nuORF	REV__ENST00000406768.1_1_14:73685932-73685974:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.75823974609375	2	504.791861	1007.56917	-0.53044	-0.00026776	-2.2691	-0.0011454	-2.7995	-0.0014132	504.79089060992897	60.28	0.81544	60.077	59.689	60.504	-0.20245					43	21	4	0	0	0	0.027866	1	6842	6842		52.299	4.6418	1	586970	+		82015	31926	57151	57244	91083	91083					0.06568716596768809
TWLQLGKM	8	Unmodified	_TWLQLGKM_					0	0	0		ENST00000567011.1_1_16:57179810-57181567:+|nuORF	ENST00000567011.1_1_16:57179810-57181567:+|nuORF	ENST00000567011.1_1_16:57179810-57181567:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.770263671875	2	488.767863	975.521173	-1.0436	-0.00051009	3.8446	0.0018791	2.801	0.001369	488.7696708105982	28.882	1.0364	28.882	28.113	29.149	0					56	24	3	0	0	0	0.91239	1	1718	1718		50.025	4.0726	1	1346600			82016	16950	57152	57245	91084	91084					0.03243319405055445
TWRLYLVQAE	10	Unmodified	_TWRLYLVQAE_					0	0	0			REV__ENST00000176763.9_1_5:171470677-171470833:-|nuORF	REV__ENST00000176763.9_1_5:171470677-171470833:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.345458984375	2	639.845687	1277.67682	-1.4289	-0.00091429	-1.1574	-0.00074059	-2.5864	-0.0016549	640.3463426063859	105.36	0.40593	105.23	105.03	105.44	-0.12444					26	9	4	0	0	0	1.0816	1	13130	13130		35.152	4.5832	1	454750	+		82017	29288	57153	57246	91085	91085					0.04909061460148223
TWRLYLVQAE	10	Unmodified	_TWRLYLVQAE_					0	0	0			REV__ENST00000176763.9_1_5:171470677-171470833:-|nuORF	REV__ENST00000176763.9_1_5:171470677-171470833:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	639.8418579101562	2	639.845687	1277.67682	-0.3483	-0.00022286	-3.458	-0.0022126	-3.8063	-0.0024354	639.8427864803843	100.12	0.5573	99.947	99.726	100.28	-0.17088					41	18	3	0	0	0	1.0508	1	12391	12391		39.253	1.4413	1	1080000	+		82018	29288	57153	57246	91086	91086					0.04909061460148223
TWSKEMVALL	10	Unmodified	_TWSKEMVALL_					0	0	0		ENSG00000165752|ENST00000298630|STK32C;nc|ENSG00000165752|Q86UX6-2|STK32C	ENSG00000165752|ENST00000298630|STK32C	ENSG00000165752|ENST00000298630|STK32C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	589.343017578125	2	589.317917	1176.62128	-1.3599	-0.00080144	-3.2185	-0.0018967	-4.5784	-0.0026982	589.8162914322811	92.796	0.30074	92.791	92.604	92.904	-0.0047913					9	6	2	0	0	0	0.03519	1	11757	11757		39.253	8.7492	1	57014			82019	7463	57154	57247	91087	91087					0.0400351194821269
TWSKGKGG	8	Unmodified	_TWSKGKGG_					0	0	0			REV__ENST00000437354.1_1_7:3304323-3341903:-|nuORF	REV__ENST00000437354.1_1_7:3304323-3341903:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	410.7187805175781	2	410.719227	819.423902	1.0893	0.0004474	-2.1056	-0.00086482	-1.0163	-0.00041743	410.7182657977767	95.455	1.742	95.459	94.878	96.62	0.0041122					98	40	4	0	0	0	1.0574	1	12101	12101		26.796	1.3459	1	2791300	+		82020	32476	57155	57248	91088	91088					0.006966735204514407
TWWRRWQPRVW	11	Unmodified	_TWWRRWQPRVW_					0	0	0		ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	4	414.971922	1655.85858	-0.12158	-5.0454E-05	2.2963	0.00095292	2.1748	0.00090247	415.2238629387917	21.182	0.34406	21.182	21.048	21.392	0					9	6	2	0	0	0	0.024902	1	629	629		1.4188	1.4188	1	21654			82021	4520	57156	57249	91089	91089					0.05688838996434242
TWYKIPKV	8	Unmodified	_TWYKIPKV_					0	0	0		nc|ENSG00000151150|Q12955-4|ANK3	nc|ENSG00000151150|Q12955-4|ANK3	nc|ENSG00000151150|Q12955-4|ANK3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.768798828125	2	517.805303	1033.59605	-0.50925	-0.00026369	-3.6966	-0.0019141	-4.2059	-0.0021778	517.803334508325	66.179	0.55762	65.966	65.712	66.269	-0.21327					22	13	2	0	0	0	0.027866	1	7565	7565		24.203	0	1	267580			82022	18381	57157	57250	91090	91090					0.08059825207942595
TYAKLVRFL	9	Unmodified	_TYAKLVRFL_					0	0	0			REV__ENST00000462073.5_1_22:30689736-30691829:-|nuORF	REV__ENST00000462073.5_1_22:30689736-30691829:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	555.837158203125	2	555.837134	1109.65972	0.92917	0.00051647	0.53252	0.00029599	1.4617	0.00081246	555.8367682143568	106.52	0.46851	106.52	106.25	106.72	0					29	14	3	0	0	0	0.85329	1	13687	13687		35.618	2.8059	1	93013	+		82023	21028	57158	57251	91091	91091					0.10927185645027748
TYALILGG	8	Unmodified	_TYALILGG_					0	0	0			REV__ENSG00000176076|ENST00000372101|KCNE5	REV__ENSG00000176076|ENST00000372101|KCNE5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.2325744628906	2	404.234179	806.453805	0.2566	0.00010373	-4.2648	-0.001724	-4.0082	-0.0016203	404.23218070982244	84.562	4.1802	84.425	82.175	86.355	-0.13789					179	97	4	0	0	0	1.0472	1	10257	10257		29.842	3.0454	1	12775000	+		82024	26993	57159	57252	91092	91092					0.04283612465758324
TYALKLSR	8	Unmodified	_TYALKLSR_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MSMS	OPSCC_40_ClassI_Rep-3	6	476.28961181640625	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.1	1	101.93	101.43	102.43	-0.17178								0	0	0	0.85517	1	12668	12668		30.504	1.3541	1		+		82025	20330	57160	57253	91093	91093					0.07766064168470166
TYELKKKPI	9	Unmodified	_TYELKKKPI_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3403930664062	2	560.342249	1118.66995	-0.14841	-8.3159E-05	-3.8046	-0.0021319	-3.9531	-0.0022151	560.339968220762	101.14	1.958	101.14	100.73	102.69	0					150	44	6	0	0	0	0.77768	1	13006	13006		40.778	1.5253	1	14784000			82026	5888	57161	57254	91094	91094					0.11535748579603933
TYELKKKPI	9	Unmodified	_TYELKKKPI_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3399658203125	2	560.342249	1118.66995	-0.071418	-4.0019E-05	-3.7355	-0.0020932	-3.8069	-0.0021332	560.3400331414996	101.3	1.9654	101.12	100.8	102.76	-0.17178					141	45	5	0	0	0	0.89441	1	12600	12600		32.812	0	1	13448000			82027	5888	57161	57254	91095	91095					0.11535748579603933
TYFAEYWY	8	Unmodified	_TYFAEYWY_					0	0	0		nc|ENSG00000240053|Q8NDX9-2|LY6G5B;ENSG00000240053|ENST00000375864|LY6G5B	nc|ENSG00000240053|Q8NDX9-2|LY6G5B	nc|ENSG00000240053|Q8NDX9-2|LY6G5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.7120971679688	2	571.745108	1141.47566	-0.9555	-0.0005463	3.2218	0.0018421	2.2663	0.0012958	571.7469781929808	28.468	0.57016	28.223	27.921	28.491	-0.24524					43	13	4	0	0	0	0.027866	1	1694	1694		29.842	8.1392	1	594180			82028	10766	57162	57255	91096	91096					-0.08941627576336941
TYFAEYWY	8	Unmodified	_TYFAEYWY_					0	0	0		nc|ENSG00000240053|Q8NDX9-2|LY6G5B;ENSG00000240053|ENST00000375864|LY6G5B	nc|ENSG00000240053|Q8NDX9-2|LY6G5B	nc|ENSG00000240053|Q8NDX9-2|LY6G5B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	571.745108	1141.47566	-0.5891	-0.00033682	2.9517	0.0016876	2.3626	0.0013508	571.7468115090999	28.335	0.62053	28.166	27.847	28.467	-0.16897	0.0050177	-2.3524E-05	NaN	29.842	46	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590370			82029	10766	57162	57255							-0.08941627576336941
TYFCFSPEFMK	11	Unmodified	_TYFCFSPEFMK_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2371520996094	3	467.206887	1398.59883	0.44137	0.00020621	-4.3257	-0.002021	-3.8843	-0.0018148	467.2047189118434	28.159	0.37531	28.24	28.035	28.411	0.080811					15	8	2	0	0	0	0.024846	1	1540	1540		11.932	0.29645	1	80970	+		82030	22782	57163	57256	91097	91097					-0.0845245551172411
TYFLIDDKD	9	Unmodified	_TYFLIDDKD_					0	0	0			REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.2998046875	2	565.274229	1128.53391	0.14719	8.3201E-05	-1.0097	-0.00057074	-0.86249	-0.00048754	565.2733444287363	74.622	0.50458	74.363	74.114	74.619	-0.25887					15	11	2	0	0	0	0.024381	1	9107	9107		45.952	0	1	117750	+		82031	21014	57164	57257	91098	91098					-0.025219907216978754
TYFQPAISRL	10	Unmodified	_TYFQPAISRL_					0	0	0		ENST00000313755.9_1_22:18900690-18907344:-|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000609229.1_1_22:18904401-18907344:-|nuORF;ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000313755.9_1_22:18900690-18907344:-|nuORF;ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	597.3543701171875	2	598.327131	1194.63971	-1.5366	-0.00091937	0.74081	0.00044325	-0.79576	-0.00047612	598.3272142087495	103.78	0.19408	103.78	103.71	103.9	0					7	4	2	0	0	0	0.03519	1	13325	13325		17.468	0	1	21418			82032	2121;14320	57165	57258	91099	91099					0.05017389914405612
TYGIPTLLQK	10	Unmodified	_TYGIPTLLQK_					0	0	0		ENSG00000176198|ENST00000641082|OR11H4;nc|ENSG00000176198|Q8NGC9|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.331882	1132.64921	0.067311	3.8188E-05	-3.5801	-0.0020311	-3.5128	-0.0019929	567.329771800472	102.68	0.76749	102.55	102.23	103	-0.12666					35	17	4	0	0	0	1.118	1	12774	12774		30.318	4.7437	1	740630			82033	8618	57166	57259	91100	91100					0.0881915819995811
TYGIVLLSGVK	11	Unmodified	_TYGIVLLSGVK_					0	0	0		ENSG00000117560|ENST00000367721|FASLG	ENSG00000117560|ENST00000367721|FASLG	ENSG00000117560|ENST00000367721|FASLG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.3455200195312	2	575.347532	1148.68051	0.60113	0.00034586	-4.2399	-0.0024394	-3.6388	-0.0020935	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	1.0075	1	12365	12365		35.152	4.5832	1	3650400			82034	3640	57167	57260	91101	91101					0.11211731234061517
TYGNVLQHCT	10	Carbamidomethyl (C)	_TYGNVLQHC(Carbamidomethyl (C))T_	TYGNVLQHC(1)T		TYGNVLQHC(72)T		0	1	0		ENST00000497021.1_1_3:100471523-100484734:-|nuORF	ENST00000497021.1_1_3:100471523-100484734:-|nuORF	ENST00000497021.1_1_3:100471523-100484734:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.7750854492188	2	596.774405	1191.53426	-0.11336	-6.7651E-05	0.24336	0.00014523	0.13	7.7583E-05	596.7745211348778	68.712	2.002	68.481	68.077	70.079	-0.23048					129	48	4	0	0	0	0.64538	1	7992	7992		71.877	6.4121	1	16426000			82035	15579	57168	57261	91102	91102	206				-0.053848942735157834
TYGRTFEDL	9	Unmodified	_TYGRTFEDL_					0	0	0			REV__ENSG00000099331|ENST00000682292|MYO9B	REV__ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.813232421875	2	551.264196	1100.51384	-1.4581	-0.00080382	-1.7941	-0.00098903	-3.2523	-0.0017928	551.7634968199634	38.125	0.33008	38.125	37.869	38.199	0					12	9	2	0	0	0	0.024527	1	3174	3174		31.53	6.0796	1	247610	+		82036	21001	57169	57262	91103	91103					-0.03239741661673179
TYGSQNLK	8	Unmodified	_TYGSQNLK_					0	0	0		ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF;ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	ENST00000571335.5_1_17:19445708-19459199:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.7352294921875	2	455.735074	909.455596	-0.25086	-0.00011433	0.34987	0.00015945	0.099003	4.5119E-05	455.7350872760236	32.259	1.065	32.101	31.861	32.926	-0.15772					58	25	4	0	0	0	1.0284	1	2187	2187		32.812	3.6629	1	1521900			82037	5563	57170	57263	91104	91104					-0.0027537851627812415
TYGTDNLLY	9	Unmodified	_TYGTDNLLY_					0	0	0			REV__ENST00000601945.1_1_19:57967019-57967581:-|nuORF	REV__ENST00000601945.1_1_19:57967019-57967581:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.2772216796875	2	530.253297	1058.49204	-0.3429	-0.00018183	-2.3904	-0.0012675	-2.7333	-0.0014493	530.2534895779656	58.678	0.19447	58.49	58.39	58.584	-0.18795					7	4	2	0	0	0	0.023181	1	6455	6455		82.305	10.927	1	136890	+		82038	35866	57171	57264	91105	91105					-0.03486546410226765
TYHLLYFN	8	Unmodified	_TYHLLYFN_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.7818603515625	2	535.768917	1069.52328	-0.7426	-0.00039786	1.2128	0.00064976	0.47017	0.0002519	535.7694680605636	40.688	0.93816	40.552	40.238	41.176	-0.13554					42	24	2	0	0	0	0.027866	1	3590	3590		25.45	8.977	1	219850			82039	5443	57172	57265	91106	91106					-0.00869928585461821
TYHMTNCI	8	Unmodified	_TYHMTNCI_					0	0	0			REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	REV__sp|P03120|VE2_HPV16RegulatoryproteinE2OS=Humanpapillomavirustype16OX=333760GN=E2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2857360839844	2	491.709688	981.404823	1.553	0.00076362	-2.0244	-0.00099543	-0.47143	-0.00023181	491.70850369284994	59.034	0.71888	58.847	58.575	59.294	-0.18705					48	19	3	0	0	0	0.027866	1	6647	6647		25.45	0	1	2096900	+		82040	37523	57173	57266	91107	91107					-0.08662367157148765
TYHRLLEG	8	Unmodified	_TYHRLLEG_					0	0	0		ENST00000399211.7_1_17:16744211-16749072:-|nuORF	ENST00000399211.7_1_17:16744211-16749072:-|nuORF	ENST00000399211.7_1_17:16744211-16749072:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79962158203125	2	494.764166	987.513779	-0.40941	-0.00020256	-1.6578	-0.00082022	-2.0672	-0.0010228	494.76352790647275	93.682	0.5792	93.678	93.368	93.947	-0.0042038					18	13	2	0	0	0	0.027866	1	11850	11850		38.806	10.924	1	141210			82041	13640	57174	57267	91108	91108					0.019523031290077597
TYHRLLEG	8	Unmodified	_TYHRLLEG_					0	0	0		ENST00000399211.7_1_17:16744211-16749072:-|nuORF	ENST00000399211.7_1_17:16744211-16749072:-|nuORF	ENST00000399211.7_1_17:16744211-16749072:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.764166	987.513779	0.39038	0.00019315	-2.4112	-0.001193	-2.0208	-0.00099983	494.7631359371436	93.72	0.53548	93.72	93.472	94.007	0	-0.0094792	-0.00045772	NaN	38.806	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134510			82042	13640	57174	57267							0.019523031290077597
TYHRLVSL	8	Unmodified	_TYHRLVSL_					0	0	0		ENST00000301067.11_1_12:49448325-49448779:-|nuORF	ENST00000301067.11_1_12:49448325-49448779:-|nuORF	ENST00000301067.11_1_12:49448325-49448779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.79962158203125	2	494.782359	987.550165	-0.39989	-0.00019786	-0.090864	-4.4958E-05	-0.49076	-0.00024282	494.7818065110111	93.31	0.67522	93.306	92.948	93.623	-0.0042038					22	15	2	0	0	0	0.027866	1	11850	11850		33.516	8.0654	1	107940			82043	11920	57175	57268	91109	91109					0.05589180025708629
TYIFDIIKRL	10	Unmodified	_TYIFDIIKRL_					0	0	0			REV__nc|ENSG00000003096|Q9P2N7|KLHL13	REV__nc|ENSG00000003096|Q9P2N7|KLHL13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.3843383789062	2	641.381906	1280.74926	0.90452	0.00058014	3.5665	0.0022875	4.471	0.0028676	641.3840517517907	101.3	0.7739	101.31	101.05	101.82	0.0090332					48	17	4	0	0	0	1.1307	1	12927	12927		26.693	1.1189	1	914740	+		82044	36423	57176	57269	91110	91110					0.12011395533750147
TYIIYTNE	8	Unmodified	_TYIIYTNE_					0	0	0			REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.29876708984375	2	508.75039	1015.48623	-0.034058	-1.7327E-05	-2.9059	-0.0014784	-2.94	-0.0014957	508.7487832951281	25.443	0.50172	25.271	25.034	25.536	-0.17151					26	11	3	0	0	0	0.027866	1	1212	1212		19.36	14.747	1	339050	+		82045	23769	57177	57270	91111	91111					-0.020896449218980706
TYIIYTNE	8	Unmodified	_TYIIYTNE_					0	0	0			REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.75039	1015.48623	-0.58893	-0.00029962	-2.3845	-0.0012131	-2.9734	-0.0015127	508.74910533480164	25.651	0.49776	25.424	25.105	25.602	-0.22683	0.085332	0.00030573	NaN	12.959	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405920	+		82046	23769	57177	57270							-0.020896449218980706
TYIIYTNE	8	Unmodified	_TYIIYTNE_					0	0	0			REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	REV__ENST00000521946.5_1_8:70505207-70554528:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.75039	1015.48623	-0.34585	-0.00017595	-2.7064	-0.0013769	-3.0523	-0.0015528	508.7489526361588	25.491	0.78669	25.32	25.081	25.867	-0.17078	-0.018187	-2.1859E-05	NaN	12.959	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352590	+		82047	23769	57177	57270							-0.020896449218980706
TYIKLQAKK	9	Unmodified	_TYIKLQAKK_					0	0	0			REV__ENSG00000125089|ENST00000245105|SH3TC1	REV__ENSG00000125089|ENST00000245105|SH3TC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8110961914062	2	546.842416	1091.67028	-1.0738	-0.00058718	2.5787	0.0014101	1.5049	0.00082296	546.844989369299	46.719	0.1456	46.566	46.514	46.659	-0.15301					5	3	2	0	0	0	0.024495	1	4615	4615		42.396	20.436	1	41230	+		82048	22798	57178	57271	91112	91112					0.1281116829943585
TYILPNLMS	9	Unmodified	_TYILPNLMS_					0	0	0			REV__ENSG00000258817|ENST00000555099|OR4C13	REV__ENSG00000258817|ENST00000555099|OR4C13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2860717773438	2	526.27826	1050.54197	-0.20391	-0.00010732	3.6914	0.0019427	3.4875	0.0018354	526.2803136007599	53.634	0.61686	53.389	52.975	53.591	-0.2453					36	16	3	0	0	0	0.024511	1	5563	5563		40.778	11.629	1	463790	+		82049	29100	57179	57272	91113	91113					0.018718649940410614
TYILSLQKT	9	Unmodified	_TYILSLQKT_					0	0	0			REV__ENST00000366930.8_1_1:218519904-218520003:+|nuORF	REV__ENST00000366930.8_1_1:218519904-218520003:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.82080078125	2	533.810782	1065.60701	0.01531	8.1729E-06	0.046356	2.4745E-05	0.061666	3.2918E-05	533.8106919734305	69.344	1.1227	69.051	68.713	69.836	-0.29291					75	28	4	0	0	0	0.024506	1	8399	8399		23.042	3.939	1	767030	+		82050	30994	57180	57273	91114	91114					0.07683182791583931
TYIVRVRML	9	Unmodified	_TYIVRVRML_					0	0	0		ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	575.841894	1149.66923	-0.26489	-0.00015253	2.1267	0.0012247	1.8619	0.0010721	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	0.98128	1	11417	11417		24.203	0	1	4946400			82051	5918	57181	57274	91115	91115					0.10038630658914371
TYIVTFVY	8	Unmodified	_TYIVTFVY_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.78204345703125	2	503.268219	1004.52188	-0.81378	-0.00040955	0.24015	0.00012086	-0.57363	-0.00028869	503.2681657926267	47.541	0.38086	47.6	47.389	47.769	0.059097					15	11	2	0	0	0	0.027866	1	4703	4703		20.482	0	1	460970	+		82052	27755	57182	57275	91116	91116					0.019804373257670704
TYKDAYFVHW	10	Unmodified	_TYKDAYFVHW_					0	0	0			REV__ENSG00000152749|ENST00000376958|GPR180	REV__ENSG00000152749|ENST00000376958|GPR180	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.726806640625	3	443.880267	1328.61897	0.14266	6.3324E-05	-0.36183	-0.00016061	-0.21917	-9.7286E-05	443.8799288914512	38.793	0.55734	38.567	38.282	38.839	-0.2257					26	14	3	0	0	0	0.03519	1	3220	3220		17.468	0	1	245300	+		82053	24861	57183	57276	91117	91117					-0.03219200465241556
TYKKTCAHGA	10	Unmodified	_TYKKTCAHGA_					0	0	0			REV__ENSG00000136872|ENST00000647789|ALDOB	REV__ENSG00000136872|ENST00000647789|ALDOB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.73681640625	2	540.268758	1078.52296	-0.67371	-0.00036399	-2.8016	-0.0015136	-3.4753	-0.0018776	540.2670207925408	37.151	0.38785	36.941	36.765	37.153	-0.2092					18	9	2	0	0	0	0.03519	1	2929	2929		54.776	18.33	1	290450	+		82054	23695	57184	57277	91118	91118					-0.013156715769810035
TYKKTCAHGA	10	Unmodified	_TYKKTCAHGA_					0	0	0			REV__ENSG00000136872|ENST00000647789|ALDOB	REV__ENSG00000136872|ENST00000647789|ALDOB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.268758	1078.52296	-0.10093	-5.4527E-05	-3.4086	-0.0018416	-3.5095	-0.0018961	540.2665512423978	37.237	0.4581	37.044	36.851	37.309	-0.193	0.072415	-0.00064524	NaN	45.972	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279580	+		82055	23695	57184	57277							-0.013156715769810035
TYKPLLSSIK	10	Unmodified	_TYKPLLSSIK_					0	0	0		nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3452758789062	2	575.347532	1148.68051	-1.1631	-0.00066918	-2.3888	-0.0013744	-3.5519	-0.0020436	575.3460130844637	97.061	1.8236	97.061	96.615	98.439	0					112	41	5	0	0	0	1.1314	1	12431	12431		27.047	4.0048	1	3789000			82056	2442	57185	57278	91119	91119					0.11211731234061517
TYKTEIQSP	9	Unmodified	_TYKTEIQSP_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7744140625	2	533.774396	1065.53424	-0.73145	-0.00039043	0.5415	0.00028904	-0.18995	-0.00010139	533.7746121985524	50.625	1.4231	50.625	50.21	51.633	0					108	37	4	0	0	0	0.34489	1	5337	5337		69.628	1.1429	1	12278000	+		82057	20103	57186	57279	91120	91120					0.004094289981594557
TYKVTAVPALA	11	Unmodified	_TYKVTAVPALA_					0	0	0			REV__nc|ENSG00000182333|P07098-2|LIPF	REV__nc|ENSG00000182333|P07098-2|LIPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3299560546875	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0624	1	11187	11187		21.686	0.73882	1	4298500	+		82058	27471	57187	57280	91121	91121					0.0881915819995811
TYKWTVPESVS	11	Unmodified	_TYKWTVPESVS_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.2560119628906	3	432.887199	1295.63977	0.80347	0.00034781	-2.7875	-0.0012067	-1.984	-0.00085885	433.2212002290089	104.91	1.6236	104.74	103.64	105.26	-0.16484					84	49	2	0	0	0	0.024735	1	12905	12905		21.78	5.8598	1	51691			82059	9034	57188	57281	91122	91122					0.0037734512375209306
TYLNVSHVK	9	Unmodified	_TYLNVSHVK_					0	0	0			REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|59|1|anti-sense	REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|59|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2776489257812	2	530.792924	1059.57129	-0.33921	-0.00018005	1.6388	0.00086987	1.2996	0.00068982	530.7934766741673	57.563	0.45141	57.373	57.184	57.636	-0.19018					18	11	2	0	0	0	0.024323	1	6334	6334		27.882	0	1	877380	+		82060	36299	57189	57282	91123	91123					0.04389145334562272
TYLQKPSQ	8	Unmodified	_TYLQKPSQ_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6465759277344	2	482.758549	963.502546	0.065896	3.1812E-05	0.41825	0.00020191	0.48414	0.00023372	482.7583086853813	47.588	1.3207	47.491	46.681	48.002	-0.097252					48	35	2	0	0	0	0.027866	1	4568	4568		26.693	13.734	1	775390			82061	1491	57190	57283	91124	91124					0.019334810348595965
TYLQKPSQ	8	Unmodified	_TYLQKPSQ_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.758549	963.502546	-0.21304	-0.00010285	0.078173	3.7739E-05	-0.13487	-6.5107E-05	482.758492795639	47.601	1.1936	47.601	47.289	48.482	0	0.042042	-0.00028264	NaN	26.693	76	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1797100			82062	1491	57190	57283							0.019334810348595965
TYLQKPSQ	8	Unmodified	_TYLQKPSQ_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.758549	963.502546	-0.1514	-7.3088E-05	-0.21536	-0.00010396	-0.36675	-0.00017705	482.7585171036898	47.721	0.99404	47.568	47.301	48.295	-0.153	0.0088671	-0.00056605	NaN	26.693	54	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1876100			82063	1491	57190	57283							0.019334810348595965
TYLQKPSQ	8	Unmodified	_TYLQKPSQ_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	482.758549	963.502546	-1.0719	-0.00051748	1.0511	0.00050743	-0.020821	-1.0051E-05	482.75895239008406	47.518	1.3672	47.577	47.282	48.65	0.059097	0.017963	0.00065673	NaN	26.693	69	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2020200			82064	1491	57190	57283							0.019334810348595965
TYLQSRYY	8	Unmodified	_TYLQSRYY_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000163349|Q86Z02-2|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.3037109375	2	547.269281	1092.52401	-1.1738	-0.00064241	-2.5372	-0.0013885	-3.7111	-0.002031	547.2680164031718	37.459	0.58	37.239	36.999	37.579	-0.2195					32	14	3	0	0	0	0.027866	1	2994	2994		44.117	26.649	1	394750			82065	7061;1273;3041	57191	57284	91125	91125					-0.018551339364194064
TYLSRNFIRI	10	Unmodified	_TYLSRNFIRI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.261962890625	3	428.247062	1281.71936	-0.26308	-0.00011266	2.207	0.00094513	1.9439	0.00083246	428.2481059627703	90.124	0.40142	89.998	89.889	90.29	-0.12512					16	9	3	0	0	0	0.03519	1	11073	11073		16.717	6.1306	1	414250			82066	11057	57192	57285	91126	91126					0.0897645658840247
TYLTGILI	8	Unmodified	_TYLTGILI_					0	0	0		nc|ENSG00000221977|Q8NGC2|OR4E2;ENSG00000221977|ENST00000641524|OR4E2	nc|ENSG00000221977|Q8NGC2|OR4E2	nc|ENSG00000221977|Q8NGC2|OR4E2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.24005126953125	2	447.270761	892.52697	-0.033893	-1.5159E-05	-2.1185	-0.00094752	-2.1523	-0.00096268	447.26978925312403	54.563	0.10538	54.318	54.231	54.337	-0.2453					4	2	2	0	0	0	0.027866	1	5793	5793		21.702	0	1	128740			82067	10629	57193	57286	91127	91127					0.0764074118840199
TYLVFFFF	8	Unmodified	_TYLVFFFF_					0	0	0		ENST00000361906.7_1_22:38615520-38615748:-|nuORF	ENST00000361906.7_1_22:38615520-38615748:-|nuORF	ENST00000361906.7_1_22:38615520-38615748:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.282958984375	2	542.281129	1082.54771	-0.85072	-0.00046133	3.5129	0.001905	2.6622	0.0014437	542.2829616630574	52.112	1.0755	51.994	51.646	52.721	-0.11875					70	27	4	0	0	0	0.82104	1	5418	5418		57.453	4.1012	1	5246800			82068	12808	57194	57287	91128	91128					0.009733315680250598
TYLVKTPQAL	10	Unmodified	_TYLVKTPQAL_					0	0	0		chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3298950195312	2	567.331882	1132.64921	-0.38591	-0.00021894	-3.2675	-0.0018538	-3.6535	-0.0020727	567.3298950288189	88.903	2.989	88.903	87.026	90.015	0					234	71	4	0	0	0	1.0508	1	11358	11358		39.253	5.0803	1	4298500			82069	415	57195	57288	91129	91129					0.08819158199935373
TYLVKTPQAL	10	Unmodified	_TYLVKTPQAL_					0	0	0		chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3297119140625	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.0508	1	11293	11293		39.253	2.8061	1	17705000			82070	415	57195	57288	91130	91130					0.08819158199935373
TYLVKTPQAL	10	Unmodified	_TYLVKTPQAL_					0	0	0		chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	chr7:135169060-135177208|339|11.36|0.17|6.03|-|0|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3296508789062	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.118	1	11115	11115		30.318	1.1477	1	19210000			82071	415	57195	57288	91131	91131					0.08819158199935373
TYLVLVRYF	9	Unmodified	_TYLVLVRYF_					0	0	0		ENST00000274242.9_2_5:40832528-40832603:-|nuORF	ENST00000274242.9_2_5:40832528-40832603:-|nuORF	ENST00000274242.9_2_5:40832528-40832603:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	586.7478637695312	2	587.336967	1172.65938	-0.474	-0.0002784	-4.2201	-0.0024786	-4.6941	-0.002757	587.8363324227286	61.318	0.20887	61.112	61.008	61.217	-0.20599					6	4	2	0	0	0	0.024381	1	6843	6843		45.952	8.7928	1	66209			82072	11680	57196	57289	91132	91132					0.07995765925170417
TYLVTIIGNAL	11	Unmodified	_TYLVTIIGNAL_					0	0	0		ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3439331054688	2	589.344989	1176.67542	-1.1102	-0.00065427	-2.5095	-0.001479	-3.6197	-0.0021332	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	1.0017	1	11365	11365		36.447	3.6343	1	4794700			82073	2007	57197	57290	91133	91133					0.09415427371459373
TYMYLAGSI	9	Unmodified	_TYMYLAGSI_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.3205871582031	2	509.749336	1017.48412	-0.34488	-0.0001758	0.2038	0.00010389	-0.14107	-7.1913E-05	509.7493748929849	69.29	2.1234	69.29	67.87	69.993	0					73	54	2	0	0	0	0.024294	1	8348	8348		55.504	36.144	1	392060			82074	7452	57198	57291	91134	91134					-0.02392396931361418
TYNEPGSQVFK	11	Unmodified	_TYNEPGSQVFK_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	635.3094482421875	2	635.309135	1268.60372	-0.94059	-0.00059756	0.77836	0.0004945	-0.16223	-0.00010306	635.3095335714095	46.001	0.69793	45.905	45.597	46.295	-0.096649					56	18	4	0	0	0	0.20179	2	4398	4398;4408		99.013	17.488	1	4775600			82075	7175	57199	57292	91135;91136	91135					-0.01984112053082754
TYNEPGSQVFK	11	Unmodified	_TYNEPGSQVFK_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	635.3092651367188	2	635.309135	1268.60372	-0.60705	-0.00038566	0.4824	0.00030647	-0.12465	-7.9192E-05	635.3093308686998	46.232	0.72175	45.97	45.701	46.423	-0.26118					56	18	4	0	0	0	0.073648	2	4432	4432;4447		114.86	28.996	1	3095700			82076	7175	57199	57292	91137;91138	91137					-0.01984112053082754
TYNEPGSQVFK	11	Unmodified	_TYNEPGSQVFK_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	635.3095703125	2	635.309135	1268.60372	-1.0459	-0.00066446	0.70432	0.00044746	-0.34157	-0.000217	635.3094736565208	46.118	0.77401	45.916	45.632	46.406	-0.20226					63	20	4	0	0	0	0.25451	2	4405	4405;4415		93.598	12.073	1	4362700			82077	7175	57199	57292	91139;91140	91139					-0.01984112053082754
TYNLPHCIA	9	Unmodified	_TYNLPHCIA_					0	0	0			REV__ENSG00000280204|ENST00000641544|OR1S1	REV__ENSG00000280204|ENST00000641544|OR1S1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7694702148438	2	516.252577	1030.4906	0.31074	0.00016042	-3.37	-0.0017397	-3.0592	-0.0015793	516.2507758429832	50.51	0.5168	50.329	50.055	50.572	-0.18071					31	13	3	0	0	0	0.024457	1	5142	5142		45.952	28.587	1	921930	+		82078	29235	57200	57293	91141	91141					-0.02342458979978801
TYNRRGVL	8	Unmodified	_TYNRRGVL_					0	0	0			REV__ENST00000540589.2_1_12:113357336-113369724:+|nuORF	REV__ENST00000540589.2_1_12:113357336-113369724:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.2594299316406	2	489.777608	977.540663	1.2297	0.00060228	0.51036	0.00024996	1.7401	0.00085225	489.77814861653945	98.579	1.1175	98.455	98.028	99.146	-0.12414					41	26	2	0	0	0	0.027866	1	12194	12194		18.324	0	1	89782	+		82079	34749	57201	57294	91142	91142					0.05099411740195592
TYNYEGRGSV	10	Unmodified	_TYNYEGRGSV_					0	0	0		ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	ENSG00000134755|ENST00000280904|DSC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2788696289062	2	573.264727	1144.5149	-0.31296	-0.00017941	-3.54	-0.0020294	-3.853	-0.0022088	573.2627643483611	77.646	0.21405	77.484	77.355	77.569	-0.16196					8	4	3	0	0	0	0.03519	1	9228	9228		45.972	21.769	1	368740			82080	4823	57202	57295	91143	91143					-0.051575272927721016
TYPKIWVK	8	Unmodified	_TYPKIWVK_					0	0	0		nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.3232421875	2	517.805303	1033.59605	-0.21339	-0.0001105	0.30908	0.00016005	0.095691	4.9549E-05	517.8052715628983	73.638	0.63029	73.373	72.936	73.566	-0.26479					24	15	2	0	0	0	0.027866	1	8613	8613		25.45	0	1	138610			82081	18762	57203	57296	91144	91144					0.08059825207942595
TYPLDEVP	8	Unmodified	_TYPLDEVP_					0	0	0			REV__ENSG00000110002|ENST00000456829|VWA5A;REV__nc|ENSG00000110002|O00534-2|VWA5A	REV__nc|ENSG00000110002|O00534-2|VWA5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2371520996094	2	467.231833	932.449113	0.11673	5.454E-05	2.283	0.0010667	2.3998	0.0011212	467.23253437135276	27.669	0.81569	27.751	27.392	28.208	0.081293					35	20	2	0	0	0	0.027866	1	1540	1540		20.482	0	1	120050	+		82082	21829;36562	57204	57297	91145	91145					-0.019813164676634187
TYPLIARVRRR	11	Unmodified	_TYPLIARVRRR_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.6241760253906	3	467.624755	1399.85244	0.98971	0.00046281	-3.1304	-0.0014639	-2.1407	-0.001001	467.6232186790615	106.95	0.65829	106.95	106.77	107.43	0					56	18	5	0	0	0	1.09	1	13768	13768		14.086	3.4992	1	698760	+		82083	24425	57205	57298	91146	91146					0.16850320764910975
TYPLTVYY	8	Unmodified	_TYPLTVYY_					0	0	0		ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15;ENST00000571782.1_1_17:4647099-4647876:+|nuORF	ENSG00000141497|ENST00000433935|ZMYND15	ENSG00000141497|ENST00000433935|ZMYND15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2547302246094	2	510.257851	1018.50115	0.11653	5.946E-05	-4.3849	-0.0022374	-4.2684	-0.002178	510.25555339134246	91.743	1.1503	91.603	91.023	92.173	-0.13942					65	26	5	0	0	0	0.97924	1	11252	11252		40.573	3.5441	1	760350			82084	5497	57206	57299	91147	91147					-0.00736153053912858
TYPQFVQSLD	10	Unmodified	_TYPQFVQSLD_					0	0	0			REV__nc|ENSG00000156504|Q7Z309-4|PABIR2	REV__nc|ENSG00000156504|Q7Z309-4|PABIR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.291748046875	2	599.292953	1196.57135	-0.53758	-0.00032217	-0.78188	-0.00046858	-1.3195	-0.00079074	599.2923973766965	46.978	0.78686	46.825	46.514	47.3	-0.15301					51	20	4	0	0	0	0.94316	1	4667	4667		51.193	1.6567	1	2102200	+		82085	25079	57207	57300	91148	91148					-0.019068994560939245
TYPQGQRQSL	10	Unmodified	_TYPQGQRQSL_					0	0	0		ZNF831|p.V671Afs*34|1|0.33|ENSG00000124203|chr20:59193031-59193031|T/-|frameshift_variant	ZNF831|p.V671Afs*34|1|0.33|ENSG00000124203|chr20:59193031-59193031|T/-|frameshift_variant	ZNF831|p.V671Afs*34|1|0.33|ENSG00000124203|chr20:59193031-59193031|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.301644	1176.58874	-1.8115	-0.0010675	-1.4062	-0.0008287	-3.2178	-0.0018962	589.3006237316658	93.216	0.3494	93.076	92.916	93.266	-0.13995					10	7	2	0	0	0	0.03519	1	11449	11449		40.058	5.8856	1	57603			82086	38212	57208	57301	91149	91149					0.0075044086956950196
TYRERKGN	8	Unmodified	_TYRERKGN_					0	0	0			REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2713012695312	2	512.270147	1022.52574	0.37647	0.00019285	1.6407	0.00084048	2.0172	0.0010333	512.2706228982657	104.7	1.3087	104.53	104.2	105.51	-0.16484					84	41	3	0	0	0	1.043	1	13018	13018		30.504	1.3541	1	273330	+		82087	28403	57209	57302	91150	91150					0.01537919872191651
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3431396484375	2	589.341726	1176.6689	-1.6043	-0.00094547	3.4637	0.0020413	1.8594	0.0010958	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0393	1	11889	11889		40.778	1.5253	1	12648000	+		82088	27558	57210	57303	91151	91151					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.343017578125	2	589.341726	1176.6689	-1.3447	-0.00079247	3.1761	0.0018718	1.8315	0.0010794	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0393	1	11893	11893		40.778	0.71999	1	13724000	+		82089	27558	57210	57303	91152	91152					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3434448242188	2	589.341726	1176.6689	0.92698	0.00054631	0.37938	0.00022358	1.3064	0.00076989	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0508	1	11446	11446		39.253	5.0803	1	4746700	+		82090	27558	57210	57303	91153	91153					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.341726	1176.6689	-1.6034	-0.00094497	3.5155	0.0020718	1.9121	0.0011269	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.089	1	11126	11126		34.173	2.5383	1	5827400	+		82091	27558	57210	57303	91154	91154					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.341726	1176.6689	-1.9349	-0.0011403	3.84	0.002263	1.9051	0.0011227	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0781	3	11425	11425;11449;11461		35.618	3.8548	1	15816000	+		82092	27558	57210	57303	91155;91156;91157	91155					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3436279296875	2	589.341726	1176.6689	-0.46523	-0.00027418	2.847	0.0016778	2.3817	0.0014037	589.3432591363344	95.498	0.94806	95.361	95.112	96.06	-0.13689					59	21	4	0	0	0	1.1088	1	11774	11774		31.53	3.4483	1	845610	+		82093	27558	57210	57303	91158	91158					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.341726	1176.6689	-0.33817	-0.0001993	2.1962	0.0012943	1.858	0.001095	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.1307	1	11199	11199		26.693	1.1189	1	6196800	+		82094	27558	57210	57303	91159	91159					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3430786132812	2	589.341726	1176.6689	-0.57069	-0.00033633	2.3802	0.0014028	1.8095	0.0010664	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0992	1	11484	11484		32.812	0.061884	1	17343000	+		82095	27558	57210	57303	91160	91160					0.08763210939082455
TYRLPKCIAI	10	Unmodified	_TYRLPKCIAI_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3440551757812	2	589.341726	1176.6689	-0.89938	-0.00053004	3.2504	0.0019156	2.351	0.0013855	589.3435287738987	95.622	0.99408	95.471	95.142	96.136	-0.15186					57	22	3	0	0	0	1.1088	1	11764	11764		31.53	1.2121	1	942320	+		82096	27558	57210	57303	91161	91161					0.08763210939082455
TYRSQAVQ	8	Unmodified	_TYRSQAVQ_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.76251220703125	2	476.745973	951.477394	1.7933	0.00085497	0.14737	7.0256E-05	1.9407	0.00092522	476.7456847317394	63.947	0.42948	63.993	63.759	64.189	0.045502					17	11	2	0	0	0	0.027866	1	7459	7459		60.972	0	1	199850			82097	9882	57211	57304	91162	91162					-0.0002857376771316922
TYRVGGNHG	9	Unmodified	_TYRVGGNHG_					0	0	0		ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000460810.1_1_3:122081873-122084409:-|nuORF	ENST00000460810.1_1_3:122081873-122084409:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.8011474609375	2	480.73594	959.457327	-0.079541	-3.8238E-05	-2.2992	-0.0011053	-2.3787	-0.0011435	480.7348966210724	94.248	0.56874	94.248	93.992	94.561	-0.00022888					25	13	3	0	0	0	0.024205	1	11973	11973		27.882	0	1	342780			82098	14664	57212	57305	91163	91163					-0.024023247076570442
TYSIKLLPI	9	Unmodified	_TYSIKLLPI_					0	0	0			REV__ENSG00000236032|ENST00000641380|OR5H14	REV__ENSG00000236032|ENST00000641380|OR5H14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2872924804688	2	524.326068	1046.63758	-0.48857	-0.00025617	-0.48488	-0.00025424	-0.97346	-0.00051041	524.3256220360967	27.841	0.46579	27.597	27.377	27.843	-0.24392					20	10	3	0	0	0	0.024021	1	1586	1586		79.451	30.009	1	99613	+		82099	28930	57213	57306	91164	91164					0.116129611766155
TYSLTTPAR	9	Unmodified	_TYSLTTPAR_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.8087158203125	2	505.269281	1008.52401	0.64414	0.00032546	1.0224	0.0005166	1.6666	0.00084206	505.2695405428629	18.812	0.54345	18.656	18.445	18.989	-0.15637					28	10	4	0	0	0	0.024506	1	356	356		30.504	1.3541	1	182030			82100	9495	57214	57307	91165	91165					0.02008866063579262
TYSLTTPAR	9	Unmodified	_TYSLTTPAR_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	505.269281	1008.52401	0.31778	0.00016056	0.87175	0.00044047	1.1895	0.00060103	505.2695847794763	18.887	0.49367	18.683	18.411	18.904	-0.20371	0.020747	0.00080919	NaN	38.806	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194950			82101	9495	57214	57307							0.02008866063579262
TYSRSGELI	9	Unmodified	_TYSRSGELI_					0	0	0			REV__nc|ENSG00000197381|P78563-3|ADARB1	REV__nc|ENSG00000197381|P78563-3|ADARB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7666015625	2	513.266739	1024.51892	-1.1212	-0.00057548	3.6057	0.0018507	2.4845	0.0012752	513.2691324119681	79.639	3.0855	79.466	78.694	81.78	-0.17226					131	74	5	0	0	0	0.39228	3	9811	9811;9820;9827		66.429	4.7931	1	5750600	+		82102	37062	57215	57308	91166;91167;91168	91166					0.0076456220097043115
TYSVALAM	8	Unmodified	_TYSVALAM_					0	0	0			REV__USP13-PEX5L|1|fusion	REV__USP13-PEX5L|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.26177978515625	2	428.217672	854.42079	-0.97852	-0.00041902	2.2638	0.00096939	1.2853	0.00055037	428.21809495396565	90.102	0.36909	90.102	90.015	90.384	0					13	8	2	0	0	0	0.027866	1	11396	11396		44.531	0	1	92223	+		82103	37764	57216	57309	91169	91169					-0.012243376486026136
TYSVITPILS	10	Unmodified	_TYSVITPILS_					0	0	0			REV__ENSG00000179468|ENST00000350513|OR9A2	REV__ENSG00000179468|ENST00000350513|OR9A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7797241210938	2	547.310615	1092.60668	-0.37681	-0.00020623	3.8757	0.0021212	3.4989	0.001915	547.3112343523678	73.688	0.12444	73.498	73.436	73.561	-0.19026					4	2	2	0	0	0	0.03519	1	8663	8663		42.396	13.247	1	32030	+		82104	27270	57217	57310	91170	91170					0.06407763071729278
TYSVPVGVTG	10	Unmodified	_TYSVPVGVTG_					0	0	0			REV__ENST00000441488.6_1_11:67925157-67938746:-|nuORF	REV__ENST00000441488.6_1_11:67925157-67938746:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2579040527344	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.0271	1	13464	13464		42.396	1.618	1	6618800	+		82105	21835	57218	57311	91171	91171					0.012100613150209938
TYSVSPKTP	9	Unmodified	_TYSVSPKTP_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2580261230469	2	490.258382	978.502212	0.30171	0.00014791	-1.0239	-0.00050197	-0.72218	-0.00035405	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	0.80003	1	13448	13448		39.253	0.23134	1	6618800	+		82106	25854	57219	57312	91172	91172					0.012100613150096251
TYTALPQHP	9	Unmodified	_TYTALPQHP_					0	0	0			REV__ENSG00000110777|ENST00000393067|POU2AF1	REV__ENSG00000110777|ENST00000393067|POU2AF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2720947265625	2	514.263999	1026.51345	-0.45165	-0.00023227	-3.7982	-0.0019533	-4.2498	-0.0021855	514.2619279826122	26.394	1.2433	26.394	26.043	27.286	0					66	30	3	0	0	0	0.02435	1	1374	1374		60.972	26.799	1	425560	+		82107	21874	57220	57313	91173	91173					0.0012488340912568674
TYTCLHWHH	9	Unmodified	_TYTCLHWHH_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	599.810546875	2	599.26655	1196.51855	-1.0157	-0.00060867	-2.7116	-0.001625	-3.7273	-0.0022336	599.76409419891	76.752	0.16502	76.523	76.444	76.609	-0.22843					5	3	2	0	0	0	0.024535	1	9435	9435		25.45	8.0852	1	68946			82108	14277	57221	57314	91174	91174					-0.07185135999907288
TYTEILIPET	10	Unmodified	_TYTEILIPET_					0	0	0			REV__ENSG00000188001|ENST00000345063|TPRG1	REV__ENSG00000188001|ENST00000345063|TPRG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.7504272460938	2	590.310812	1178.60707	-0.77273	-0.00045615	-3.8678	-0.0022832	-4.6405	-0.0027394	590.8093404352312	60.831	0.75492	60.625	60.295	61.05	-0.20599					28	18	2	0	0	0	0.03519	1	6737	6737		56.721	27.571	1	527760	+		82109	28000	57222	57315	91175	91175					0.02491138000891624
TYTLAPLW	8	Unmodified	_TYTLAPLW_					0	0	0			REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF	REV__ENST00000381470.7_1_8:21939427-21939874:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.6465148925781	2	482.760561	963.506569	-0.37164	-0.00017942	-3.2325	-0.0015605	-3.6041	-0.0017399	482.75860229429765	47.874	1.5689	47.598	46.723	48.292	-0.27598					61	42	3	0	0	0	0.027866	1	4590	4590		13.775	0	1	630300	+		82110	31519	57223	57316	91176	91176					0.023355705285666772
TYVEDRDAAE	10	Unmodified	_TYVEDRDAAE_					0	0	0			REV__nc|ENSG00000198948|O75121-2|MFAP3L	REV__nc|ENSG00000198948|O75121-2|MFAP3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.7863159179688	2	584.759475	1167.5044	-2.0322	-0.0011884	-3.2342	-0.0018912	-5.2664	-0.0030796	584.7573506483492	65.187	0.77853	64.985	64.738	65.516	-0.20254					40	18	3	0	0	0	0.03519	1	7517	7517		14.137	0.68308	1	762050	+		82111	28527	57224	57317	91177	91177					-0.07265554737864477
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.3086547851562	2	560.821681	1119.62881	0.51842	0.00029074	-0.81937	-0.00045952	-0.30095	-0.00016878	560.8213597370419	67.539	0.34215	67.283	67.113	67.455	-0.25516					13	7	2	0	0	0	0.024484	1	7767	7767		30.318	7.7381	1	109640			82112	1175;38049	57225	57318	91178	91178					0.07377987540144204
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	560.821681	1119.62881	-0.34798	-0.00019515	-0.51538	-0.00028904	-0.86336	-0.00048419	560.8208717354527	67.22	0.4821	67.22	66.968	67.45	0	-0.054815	-0.0002362	NaN	30.318	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581330			82113	1175;38049	57225	57318							0.07377987540144204
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	560.821681	1119.62881	-0.3934	-0.00022063	-0.26738	-0.00014995	-0.66078	-0.00037058	560.8214252968902	67.562	0.44025	67.274	67.03	67.47	-0.28834	-0.00030806	4.1961E-05	NaN	30.318	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493350			82114	1175;38049	57225	57318							0.07377987540144204
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2-ITPK1|2|fusion;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2;SYNE2-ITPK1|1|fusion	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.821681	1119.62881	-0.13024	-7.3039E-05	-0.24327	-0.00013643	-0.37351	-0.00020947	560.8214675767874	67.286	0.44177	67.31	67.071	67.513	0.023911	0.035707	6.9004E-05	NaN	30.318	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499020			82115	1175;38049	57225	57318							0.07377987540144204
TYVGCAEG	8	Unmodified	_TYVGCAEG_					0	0	0			REV__ENSG00000115457|ENST00000233809|IGFBP2	REV__ENSG00000115457|ENST00000233809|IGFBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.8860168457031	2	400.168179	798.321804	1.1573	0.00046312	0.506	0.00020248	1.6633	0.00066561	400.16863200119144	54.432	1.0678	54.187	53.949	55.017	-0.2453					46	30	3	0	0	0	0.027866	1	5878	5878		18.324	3.6603	1	473660	+		82116	22205	57226	57319	91179	91179					-0.08542360613489564
TYVGLNDPQ	9	Unmodified	_TYVGLNDPQ_					0	0	0			REV__ENST00000586958.1_1_19:38880992-38882662:+|nuORF	REV__ENST00000586958.1_1_19:38880992-38882662:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.76470947265625	2	503.745639	1005.47673	-0.15248	-7.6809E-05	1.1628	0.00058574	1.0103	0.00050893	503.74605500039695	35.304	0.5047	35.088	34.913	35.418	-0.21555					17	12	2	0	0	0	0.024477	1	2672	2672		35.618	14.671	1	77743	+		82117	35615	57227	57320	91180	91180					-0.02579413207433845
TYVLLAGM	8	Oxidation (M)	_TYVLLAGM(Oxidation (M))_		TYVLLAGM(1)		TYVLLAGM(69)	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.23077392578125	2	442.233322	882.45209	-0.26122	-0.00011552	-3.6623	-0.0016196	-3.9235	-0.0017351	442.23161775509965	46.975	1.6118	46.878	46.539	48.151	-0.096649					107	43	4	0	0	0	0.67787	3	4560	4550;4560;4582		69.093	14.978	1	11530000			82118	8504	57228	57321	91181;91182;91183	91182		355			0.006162353855074798
TYVLLAGM	8	Oxidation (M)	_TYVLLAGM(Oxidation (M))_		TYVLLAGM(1)		TYVLLAGM(82)	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.23175048828125	2	442.233322	882.45209	0.075977	3.36E-05	-4.0201	-0.0017778	-3.9441	-0.0017442	442.23146374260193	47.263	1.5678	46.994	46.695	48.263	-0.26939					103	42	4	0	0	0	0.54157	1	4594	4594		81.716	24.263	1	11562000			82119	8504	57228	57321	91184	91184		355			0.006162353855074798
TYVLLAGM	8	Oxidation (M)	_TYVLLAGM(Oxidation (M))_		TYVLLAGM(1)		TYVLLAGM(69)	0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.2313537597656	2	442.233322	882.45209	0.091805	4.0599E-05	-4.0664	-0.0017983	-3.9746	-0.0017577	442.2314296782027	47.099	1.679	46.905	46.577	48.256	-0.19387					108	45	4	0	0	0	0.67787	2	4582	4582;4594		69.093	22.327	1	11135000			82120	8504	57228	57321	91185;91186	91185		355			0.006162353855074798
TYVLLAGM	8	Oxidation (M)	_TYVLLAGM(Oxidation (M))_					0	0	1		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	442.233322	882.45209	0.64898	0.000287	-3.3539	-0.0014832	-2.7049	-0.0011962	442.2312054465681	47.247	0.33812	47.094	46.858	47.196	-0.15301	0.12642	0.00049698	NaN	81.716	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48885			82121	8504	57228	57321				355			0.006162353855074798
TYVLSPIRP	9	Unmodified	_TYVLSPIRP_					0	0	0			REV__ENST00000432854.5_1_7:44100999-44101362:+|nuORF	REV__ENST00000432854.5_1_7:44100999-44101362:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3043212890625	2	523.305667	1044.59678	-1.1808	-0.0006179	-2.3576	-0.0012338	-3.5384	-0.0018517	523.3043344110223	90.238	1.0253	90.083	89.781	90.806	-0.1552					44	24	2	0	0	0	0.77768	1	11027	11027		40.778	1.5253	1	1555500	+		82122	32389	57229	57322	91187	91187					0.07626619856978323
TYVVCYFSQV	10	Unmodified	_TYVVCYFSQV_					0	0	0		IL17RA|p.E506Q|1|0.16|ENSG00000177663|chr22:17108735-17108735|G/C|missense_variant	IL17RA|p.E506Q|1|0.16|ENSG00000177663|chr22:17108735-17108735|G/C|missense_variant	IL17RA|p.E506Q|1|0.16|ENSG00000177663|chr22:17108735-17108735|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.7867431640625	2	604.78645	1207.55835	0.49624	0.00030012	-0.36272	-0.00021937	0.13352	8.075E-05	604.7860799385778	74.173	1.2844	74.173	73.871	75.155	0					84	30	4	0	0	0	0.52765	1	9062	9062		85.161	24.189	1	2331600			82123	17762	57230	57323	91188	91188					-0.037130538398514545
TYVVCYFSQV	10	Unmodified	_TYVVCYFSQV_					0	0	0		IL17RA|p.E506Q|1|0.16|ENSG00000177663|chr22:17108735-17108735|G/C|missense_variant	IL17RA|p.E506Q|1|0.16|ENSG00000177663|chr22:17108735-17108735|G/C|missense_variant	IL17RA|p.E506Q|1|0.16|ENSG00000177663|chr22:17108735-17108735|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.7865600585938	2	604.78645	1207.55835	-0.057425	-3.473E-05	0.075119	4.5431E-05	0.017695	1.0701E-05	604.7863160456002	74.449	1.3496	74.19	73.902	75.252	-0.25887					69	32	4	0	0	0	0.59716	1	9071	9071		77.318	1.1479	1	2432000			82124	17762	57230	57323	91189	91189					-0.037130538398514545
TYVVRPLAFSL	11	Unmodified	_TYVVRPLAFSL_					0	0	0			REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	REV__ENST00000524234.1_2_8:54745628-54755167:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3690795898438	2	633.366256	1264.71796	0.31837	0.00020164	4.1352	0.0026191	4.4535	0.0028207	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	0.97926	1	11922	11922		41.427	4.9799	1	3419700	+		82125	34379	57231	57324	91190	91190					0.09618822499669477
TYYEGGYF	8	Unmodified	_TYYEGGYF_					0	0	0		ENSG00000099804|ENST00000215574|CDC34;ENST00000586788.1_1_19:531880-536341:+|nuORF	ENSG00000099804|ENST00000215574|CDC34	ENSG00000099804|ENST00000215574|CDC34	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.20782470703125	2	500.208358	998.402163	-0.47202	-0.00023611	-0.52382	-0.00026202	-0.99584	-0.00049813	500.20805786375143	42.014	0.84354	41.783	41.43	42.273	-0.23186					79	22	5	0	0	0	0.71717	1	3759	3759		65.897	4.9255	1	17902000			82126	2085	57232	57325	91191	91191					-0.09710176018802485
VAAAALVTY	9	Unmodified	_VAAAALVTY_					0	0	0			REV__ENST00000480230.5_1_2:241465606-241465834:-|nuORF	REV__ENST00000480230.5_1_2:241465606-241465834:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.2663879394531	2	439.752736	877.490919	-0.44089	-0.00019388	1.2049	0.00052985	0.764	0.00033597	439.75313679904906	43.267	0.58298	43.267	43.002	43.585	0					38	15	3	0	0	0	0.023528	1	4049	4049		50.025	9.4519	1	817120	+		82127	33417	57233	57326	91192	91192					0.047272840115169856
VAAAALVTY	9	Unmodified	_VAAAALVTY_					0	0	0			REV__ENST00000480230.5_1_2:241465606-241465834:-|nuORF	REV__ENST00000480230.5_1_2:241465606-241465834:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2664794921875	2	439.752736	877.490919	-0.33067	-0.00014541	1.5375	0.00067612	1.2068	0.00053071	439.7531556859732	43.432	0.54833	43.293	42.991	43.54	-0.13929					44	14	4	0	0	0	0.023775	1	4053	4053		57.811	11.859	1	883750	+		82128	33417	57233	57326	91193	91193					0.047272840115169856
VAAAALVTY	9	Unmodified	_VAAAALVTY_					0	0	0			REV__ENST00000480230.5_1_2:241465606-241465834:-|nuORF	REV__ENST00000480230.5_1_2:241465606-241465834:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2663269042969	2	439.752736	877.490919	0.54757	0.00024079	0.33077	0.00014546	0.87834	0.00038625	439.75271488358413	43.328	0.58273	43.358	43.082	43.664	0.030827					34	15	3	0	0	0	0.020485	1	4009	4009		101.21	21.272	1	894300	+		82129	33417	57233	57326	91194	91194					0.047272840115169856
VAAAATAAAI	10	Unmodified	_VAAAATAAAI_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2424621582031	2	415.242535	828.470518	-0.62714	-0.00026041	1.3293	0.00055199	0.70218	0.00029157	415.24291658557826	35.123	0.68097	35.102	34.828	35.509	-0.021763					55	17	4	0	0	0	0.68163	1	2674	2674		68.485	0	1	2417100			82130	4177	57234	57327	91195	91195					0.04942113351694388
VAAAAVALGLL	11	Unmodified	_VAAAAVALGLL_					0	0	0			REV__ENSG00000167740|ENST00000301391|CYB5D2	REV__ENSG00000167740|ENST00000301391|CYB5D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7975158691406	2	484.810585	967.606617	0.10755	5.214E-05	2.7762	0.0013459	2.8837	0.0013981	484.81009132882315	58.761	0.39634	58.852	58.708	59.105	0.091217					17	10	2	0	0	0	0.024776	1	6578	6578		50.025	5.9077	1	467170	+		82131	26189	57235	57328	91196	91196					0.12151807862369424
VAAAEKEPA	9	Unmodified	_VAAAEKEPA_					0	0	0			REV__ENSG00000108819|ENST00000612501|PPP1R9B	REV__ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2552490234375	2	443.23745	884.460347	0.18233	8.0814E-05	0.57257	0.00025379	0.7549	0.0003346	443.2376291920481	53.758	0.91817	53.758	53.439	54.357	0					55	25	4	0	0	0	0.018368	1	5829	5829		115.46	9.0438	1	2779300	+		82132	21764	57236	57329	91197	91197					0.013495056264787308
VAAAEKEPA	9	Unmodified	_VAAAEKEPA_					0	0	0			REV__ENSG00000108819|ENST00000612501|PPP1R9B	REV__ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2552490234375	2	443.23745	884.460347	-0.078362	-3.4733E-05	0.85022	0.00037685	0.77185	0.00034211	443.23779060149786	53.821	0.99474	53.674	53.383	54.378	-0.14723					51	27	3	0	0	0	0.01589	1	5842	5842		102.77	6.5829	1	2541300	+		82133	21764	57236	57329	91198	91198					0.013495056264787308
VAAAEKEPA	9	Unmodified	_VAAAEKEPA_					0	0	0			REV__ENSG00000108819|ENST00000612501|PPP1R9B	REV__ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.23745	884.460347	-1.209	-0.0005359	2.6768	0.0011864	1.4677	0.00065055	443.23786501784076	53.892	0.79286	53.756	53.462	54.255	-0.13617	0.0046562	0.0016525	NaN	102.77	69	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3503800	+		82134	21764	57236	57329							0.013495056264787308
VAAAEKEPA	9	Unmodified	_VAAAEKEPA_					0	0	0			REV__ENSG00000108819|ENST00000612501|PPP1R9B	REV__ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.23745	884.460347	-0.16257	-7.2058E-05	1.9052	0.00084445	1.7426	0.00077239	443.2374196348268	54.067	1.025	53.822	53.383	54.408	-0.2453	0.070397	0.00096851	NaN	102.77	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4013100	+		82135	21764	57236	57329							0.013495056264787308
VAAAGPEGAR	10	Unmodified	_VAAAGPEGAR_					0	0	0		ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	ENST00000427566.2_1_1:248100136-248100640:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.287353515625	2	449.740691	897.466829	-0.069414	-3.1218E-05	3.8707	0.0017408	3.8013	0.0017096	449.7407839552419	37.287	0.26962	37.078	36.923	37.192	-0.2092					11	6	2	0	0	0	0.03519	1	2945	2945		47.657	0	1	52223			82136	14113	57237	57330	91199	91199					0.013994435778613479
VAAAKHLIL	9	Unmodified	_VAAAKHLIL_					0	0	0		nc|ENSG00000182134|Q9Y2W6-3|TDRKH;ENSG00000182134|ENST00000368824|TDRKH;ENST00000484421.5_1_1:151751155-151751593:-|nuORF	nc|ENSG00000182134|Q9Y2W6-3|TDRKH	nc|ENSG00000182134|Q9Y2W6-3|TDRKH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2954406738281	2	468.30547	934.596387	-0.14446	-6.7653E-05	-0.86869	-0.00040681	-1.0132	-0.00047447	468.3050202581613	61.906	1.6994	61.968	61.542	63.242	0.062767					95	44	5	0	0	0	0.024517	1	7286	7286		35.201	9.7505	1	43419000			82137	9102	57238	57331	91200	91200					0.12647244927802603
VAAATAARV	9	Unmodified	_VAAATAARV_					0	0	0			REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	REV__nc|ENSG00000135272|Q9P1T7-1|MDFIC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.2483215332031	2	415.248152	828.481751	-0.23383	-9.7097E-05	0.052651	2.1863E-05	-0.18118	-7.5233E-05	415.24819602679423	35.905	1.3177	35.905	35.57	36.887	0					101	35	5	0	0	0	0.074956	1	2789	2789		119.56	13.142	1	20766000	+		82138	36685	57239	57332	91201	91201					0.060649354458519156
VAAAVFTLIL	10	Unmodified	_VAAAVFTLIL_					0	0	0			REV__ENSG00000275896|ENST00000539842|PRSS2	REV__ENSG00000275896|ENST00000539842|PRSS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.3222351074219	2	509.320786	1016.62702	0.80436	0.00040968	-0.39038	-0.00019883	0.41398	0.00021085	509.32028968883503	107.18	0.56009	107.18	106.91	107.47	0					36	13	3	0	0	0	1.0004	1	13784	13784		45.952	5.1738	1	370820	+		82139	29197	57240	57333	91202	91202					0.11936978522192021
VAAAVRVSL	9	Unmodified	_VAAAVRVSL_					0	0	0			REV__nc|ENSG00000152234|P25705-3|ATP5F1A	REV__nc|ENSG00000152234|P25705-3|ATP5F1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2552490234375	2	443.279452	884.544351	0.032373	1.435E-05	-0.5668	-0.00025125	-0.53442	-0.0002369	443.27896448844973	53.951	0.49116	53.804	53.529	54.02	-0.14723					21	13	2	0	0	0	0.017891	1	5842	5842		96.19	0	1	305070	+		82140	24825	57241	57334	91203	91203					0.09746081514037996
VAAAVRVSL	9	Unmodified	_VAAAVRVSL_					0	0	0			REV__nc|ENSG00000152234|P25705-3|ATP5F1A	REV__nc|ENSG00000152234|P25705-3|ATP5F1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2547607421875	2	443.279452	884.544351	0.059501	2.6376E-05	-1.0669	-0.00047293	-1.0074	-0.00044655	443.27876178918206	53.717	0.76581	53.812	53.592	54.358	0.095669					32	21	2	0	0	0	0.015349	1	5729	5729		87.754	0	1	424650	+		82141	24825	57241	57334	91204	91204					0.09746081514037996
VAACQVGDPV	10	Unmodified	_VAACQVGDPV_					0	0	0		nc|ENSG00000167632|Q96Q05-2|TRAPPC9;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;ENST00000522504.5_1_8:140743306-140893377:-|nuORF	nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000522504.5_1_8:140743306-140893377:-|nuORF	nc|ENSG00000167632|Q96Q05-2|TRAPPC9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.7357177734375	2	479.73676	957.458967	-0.026737	-1.2827E-05	-3.1348	-0.0015039	-3.1616	-0.0015167	479.7350141799181	60.004	2.0545	59.827	59.401	61.455	-0.1761					147	51	6	0	0	0	0.74632	1	6716	6716		64.207	3.2353	1	26409000			82142	18480;16029	57242	57335	91205	91205					-0.021464517339381928
VAADRDIQG	9	Unmodified	_VAADRDIQG_					0	0	0		ENST00000296543.9_1_4:140222808-140222841:+|nuORF	ENST00000296543.9_1_4:140222808-140222841:+|nuORF	ENST00000296543.9_1_4:140222808-140222841:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7559814453125	2	472.743431	943.472308	0.67649	0.00031981	-3.4626	-0.0016369	-2.7861	-0.0013171	472.74135128529525	42.75	0.32553	42.75	42.497	42.823	0					11	8	2	0	0	0	0.024427	1	3935	3935		19.997	0	1	111520			82143	11844	57243	57336	91206	91206					-0.0016887763032400471
VAADRLTAR	9	Unmodified	_VAADRLTAR_					0	0	0			REV__nc|ENSG00000211812|A0A0B4J265|TRAV26-2	REV__nc|ENSG00000211812|A0A0B4J265|TRAV26-2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2568359375	2	486.78289	971.551228	-0.89409	-0.00043523	2.1548	0.0010489	1.2607	0.00061367	486.78372790106795	25.423	0.20612	25.423	25.363	25.569	0					7	4	2	0	0	0	0.02435	1	1218	1218		51.335	5.3632	1	98569	+		82144	37113	57244	57337	91207	91207					0.06431394394610379
VAADVAGRID	10	Unmodified	_VAADVAGRID_					0	0	0			REV__ENST00000521335.1_1_8:54745492-54754250:-|nuORF	REV__ENST00000521335.1_1_8:54745492-54754250:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7719421386719	2	493.766906	985.519259	-0.29408	-0.00014521	0.68562	0.00033853	0.39153	0.00019333	493.76683279996223	36.641	0.5336	36.594	36.31	36.843	-0.047787					34	13	4	0	0	0	0.03519	1	2936	2936		40.778	7.9657	1	813850	+		82145	20121	57245	57338	91208	91208					0.025919819208070294
VAAEGAYY	8	Unmodified	_VAAEGAYY_					0	0	0		ENST00000413312.5_1_2:214149168-214161993:+|nuORF;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENSG00000144451|ENST00000331683|SPAG16	ENST00000413312.5_1_2:214149168-214161993:+|nuORF	ENST00000413312.5_1_2:214149168-214161993:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.19940185546875	2	422.197793	842.381034	0.69101	0.00029174	1.5375	0.00064914	2.2285	0.00094089	422.1982005437535	82.778	1.4222	82.558	82.086	83.509	-0.22015					61	32	2	0	0	0	1.0472	1	10007	10007		29.842	3.0454	1	194070			82146	5740	57246	57339	91209	91209					-0.04646141327680198
VAAEIVTSH	9	Unmodified	_VAAEIVTSH_					0	0	0		ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2328796386719	2	463.750724	925.486896	0.029342	1.3607E-05	-0.71047	-0.00032948	-0.68113	-0.00031587	463.7502495617449	53.526	0.53424	53.621	53.371	53.905	0.095669					18	14	2	0	0	0	0.024	1	5736	5736		65.803	10.299	1	166220			82147	8192	57247	57340	91210	91210					0.021171945178025453
VAAEIVTSH	9	Unmodified	_VAAEIVTSH_					0	0	0		ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	ENSG00000171798|ENST00000304613|KNDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.750724	925.486896	-0.40401	-0.00018736	-0.65511	-0.00030381	-1.0591	-0.00049117	463.750252623063	53.767	0.40107	53.62	53.42	53.821	-0.14723	-0.0092981	3.3146E-05	NaN	65.803	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207920			82148	8192	57247	57340							0.021171945178025453
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	557.8448486328125	2	557.845156	1113.67576	-0.37455	-0.00020894	0.011546	6.441E-06	-0.363	-0.0002025	557.8449291184573	54.303	0.8592	54.303	54.01	54.869	0					66	24	4	0	0	0	0.015714	2	5931	5931;5944		132.76	15.232	1	6030200			82149	16521	57248	57341	91211;91212	91211					0.12346847091271229
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.844482421875	2	557.845156	1113.67576	-0.23443	-0.00013078	-0.046967	-2.62E-05	-0.2814	-0.00015698	557.8448939271652	54.401	0.69009	54.251	53.951	54.641	-0.15036					58	19	4	0	0	0	0.0058957	2	5920	5920;5933		145.16	16.553	1	5724000			82150	16521	57248	57341	91213;91214	91213					0.12346847091271229
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.84423828125	2	557.845156	1113.67576	0.65068	0.00036298	-0.94166	-0.0005253	-0.29098	-0.00016232	557.8443818256034	54.107	0.85284	54.205	53.739	54.591	0.098015					61	24	5	0	0	0	0.0058957	1	5820	5820		145.16	8.1666	1	4992900			82151	16521	57248	57341	91215	91215					0.12346847091271229
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.845156	1113.67576	-0.67487	-0.00037647	0.066399	3.7041E-05	-0.60847	-0.00033943	557.8449132808216	54.303	0.54626	54.166	53.959	54.505	-0.13616	-0.065749	0.00049232	NaN	145.16	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745430			82152	16521	57248	57341							0.12346847091271229
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.845156	1113.67576	-0.030229	-1.6863E-05	-0.46955	-0.00026194	-0.49978	-0.0002788	557.844602123501	54.48	0.50925	54.234	54.041	54.551	-0.2453	0.0021044	-0.00010564	NaN	145.16	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1041500			82153	16521	57248	57341							0.12346847091271229
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.845156	1113.67576	0.32635	0.00018205	-0.81302	-0.00045354	-0.48666	-0.00027148	557.844439436923	54.44	0.48669	54.234	54.016	54.502	-0.20613	0.0015396	-0.00048884	NaN	145.16	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706000			82154	16521	57248	57341							0.12346847091271229
VAAFLLLP	8	Unmodified	_VAAFLLLP_					0	0	0			REV__ENST00000314103.5_1_21:37781100-37781745:+|nuORF	REV__ENST00000314103.5_1_21:37781100-37781745:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5926818847656	2	422.270564	842.526576	-0.025094	-1.0596E-05	-3.5302	-0.0014907	-3.5553	-0.0015013	422.26907747113813	49.994	0.33759	50.075	49.81	50.148	0.080994					12	9	2	0	0	0	0.027866	1	5144	5144		16.705	0	1	113060	+		82155	30239	57249	57342	91216	91216					0.09901366259180122
VAAFMVEP	8	Unmodified	_VAAFMVEP_					0	0	0		nc|ENSG00000065154|P04181-2|OAT;ENSG00000065154|ENST00000368845|OAT	nc|ENSG00000065154|P04181-2|OAT	nc|ENSG00000065154|P04181-2|OAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	432.74493408203125	2	432.220214	862.425876	-0.28917	-0.00012499	3.1607	0.0013661	2.8715	0.0012411	432.22306941195393	29.816	0.1726	29.572	29.482	29.654	-0.2446					5	3	2	0	0	0	0.027866	1	1843	1843		19.36	10.538	1	26937			82156	1294	57250	57343	91217	91217					-0.010840337859804094
VAAFMVEP	8	Unmodified	_VAAFMVEP_					0	0	0		nc|ENSG00000065154|P04181-2|OAT;ENSG00000065154|ENST00000368845|OAT	nc|ENSG00000065154|P04181-2|OAT	nc|ENSG00000065154|P04181-2|OAT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	432.220214	862.425876	-0.69934	-0.00030227	4.6437	0.0020071	3.9444	0.0017048	432.22278541602805	29.811	0.16092	29.89	29.763	29.924	0.078346	0.15899	0.0012335	NaN	12.959	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33291			82157	1294	57250	57343							-0.010840337859804094
VAAGLRSVA	9	Unmodified	_VAAGLRSVA_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.2560119628906	2	422.255977	842.497401	0.51542	0.00021764	-1.1683	-0.00049331	-0.65286	-0.00027567	422.2554645433403	21.78	0.94479	21.603	21.303	22.247	-0.17721					44	19	4	0	0	0	0.26797	1	707	707		79.939	5.9645	1	643350			82158	8915	57251	57344	91218	91218					0.06985221962895594
VAAGLRSVA	9	Unmodified	_VAAGLRSVA_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	422.255977	842.497401	-0.12014	-5.0728E-05	-0.21418	-9.0438E-05	-0.33431	-0.00014117	422.2558311791269	21.924	0.67052	21.733	21.324	21.994	-0.19072	0.077641	4.3749E-05	NaN	79.939	31	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	640430			82159	8915	57251	57344							0.06985221962895594
VAAGLWLP	8	Unmodified	_VAAGLWLP_					0	0	0			REV__ENST00000252797.6_1_16:30567229-30569136:-|nuORF	REV__ENST00000252797.6_1_16:30567229-30569136:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.25830078125	2	413.744714	825.474875	-1.2498	-0.00051709	4.1053	0.0016985	2.8555	0.0011814	413.7487343862784	38.683	0.33588	38.513	38.351	38.687	-0.17052					18	8	3	0	0	0	0.027866	1	3245	3245		16.705	7.8826	1	112320	+		82160	29514	57252	57345	91219	91219					0.05515622565269496
VAAGNLMNPSL	11	Unmodified	_VAAGNLMNPSL_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7669067382812	2	543.784241	1085.55393	-0.95304	-0.00051825	-2.3624	-0.0012847	-3.3155	-0.0018029	543.7826158553552	58.554	0.36337	58.367	58.137	58.5	-0.18705					15	9	2	0	0	0	0.024747	1	6596	6596		31.53	0	1	351400			82161	957	57253	57346	91220	91220					0.014574817372704274
VAAGNLMNPSL	11	Unmodified	_VAAGNLMNPSL_					0	0	0		ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000020633|Q13761-2|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	ENSG00000020633|ENST00000308873|RUNX3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.784241	1085.55393	-0.89452	-0.00048642	-2.3712	-0.0012894	-3.2657	-0.0017759	543.7826420306836	58.104	0.39201	58.195	57.979	58.371	0.091217	-0.069946	0.00024152	NaN	24.519	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325260			82162	957	57253	57346							0.014574817372704274
VAAGWACSLGQ	11	Unmodified	_VAAGWACSLGQ_					0	0	0			REV__ENSG00000163704|ENST00000412055|PRRT3	REV__ENSG00000163704|ENST00000412055|PRRT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.807861328125	2	531.755484	1061.49641	-0.42316	-0.00022502	3.4611	0.0018404	3.0379	0.0016154	532.2568027374255	47.663	0.46367	47.51	47.3	47.764	-0.15301					16	13	2	0	0	0	0.024785	1	4781	4781		37.812	0	1	73841	+		82163	25621	57254	57347	91221	91221					-0.031873604683369194
VAAGYFLI	8	Unmodified	_VAAGYFLI_					0	0	0			REV__ENSG00000203661|ENST00000641363|OR2T5	REV__ENSG00000203661|ENST00000641363|OR2T5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2664794921875	2	427.244547	852.47454	-0.05339	-2.281E-05	1.8392	0.00078579	1.7858	0.00076297	427.24550582781984	42.613	0.2521	42.473	42.379	42.631	-0.13929					8	6	2	0	0	0	0.027866	1	3913	3913		10.185	0	1	164100	+		82164	27508	57255	57348	91222	91222					0.04240202845414842
VAAILARR	8	Unmodified	_VAAILARR_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.2877502441406	2	435.287611	868.56067	-0.62676	-0.00027282	0.22968	9.9976E-05	-0.39708	-0.00017285	435.28769109878465	26.134	1.5756	25.898	25.425	27.001	-0.23603					100	40	4	0	0	0	1.0017	1	1300	1300		37.028	0	1	13408000			82165	8932	57256	57349	91223	91223					0.12113207470792986
VAAIQPLSRA	10	Unmodified	_VAAIQPLSRA_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3106689453125	2	513.308741	1024.60293	-0.83253	-0.00042735	4.4093	0.0022634	3.5768	0.001836	513.3109833319763	64.986	1.6108	65.023	64.555	66.166	0.037384					101	43	4	0	0	0	0.52982	1	7567	7567		84.916	10.941	1	14191000	+		82166	33833	57257	57350	91224	91224					0.09161138088529697
VAAKCKIVKG	10	Unmodified	_VAAKCKIVKG_					0	0	0			REV__ENSG00000187758|ENST00000209668|ADH1A	REV__ENSG00000187758|ENST00000209668|ADH1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7723083496094	2	508.817887	1015.62122	-1.094	-0.00055667	0.58721	0.00029878	-0.50684	-0.00025789	508.817948598427	51.524	0.47821	51.611	51.339	51.818	0.087006					27	13	3	0	0	0	0.03519	1	5431	5431		21.96	4.5949	1	534660	+		82167	27969	57258	57351	91225	91225					0.11403556738855514
VAAKGIWTMT	10	Unmodified	_VAAKGIWTMT_					0	0	0		ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.73828125	2	539.291702	1076.56885	-0.66823	-0.00036037	-2.4091	-0.0012992	-3.0774	-0.0016596	539.2918065534408	36.815	0.9897	36.598	36.165	37.155	-0.21661					77	24	6	0	0	0	0.03519	1	2909	2909		60.118	10.677	1	541790			82168	6643	57259	57352	91226	91226					0.033629736052489534
VAAKPTHM	8	Unmodified	_VAAKPTHM_					0	0	0			REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	REV__chr10:128113602-128116491|416|12.37|0.71|4.13|-|ENST00000368653|MKI67,MKI67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7585754394531	2	427.73128	853.448008	0.078211	3.3453E-05	1.2046	0.00051526	1.2829	0.00054872	427.7318461914808	41.275	0.23009	41.14	40.985	41.215	-0.13554					7	5	2	0	0	0	0.027866	1	3616	3616		42.474	0	1	24161	+		82169	19339	57260	57353	91227	91227					0.015421906824485632
VAAKTLTVL	9	Unmodified	_VAAKTLTVL_					0	0	0			REV__ENSG00000163755|ENST00000296051|HPS3	REV__ENSG00000163755|ENST00000296051|HPS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2779846191406	2	458.29731	914.580068	-1.0698	-0.00049027	-0.51403	-0.00023558	-1.5838	-0.00072585	458.2967190604574	44.042	0.49	43.798	43.52	44.01	-0.2444					20	12	2	0	0	0	0.024477	1	4101	4101		35.618	11.416	1	337600	+		82170	25630	57261	57354	91228	91228					0.11936118971038923
VAAKTLTVL	9	Unmodified	_VAAKTLTVL_					0	0	0			REV__ENSG00000163755|ENST00000296051|HPS3	REV__ENSG00000163755|ENST00000296051|HPS3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.29731	914.580068	-0.71199	-0.00032631	0.13811	6.3293E-05	-0.57389	-0.00026301	458.29725967149915	43.988	0.44973	43.988	43.765	44.215	0	0.099021	3.2658E-05	NaN	44.117	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302560	+		82171	25630	57261	57354							0.11936118971038923
VAALASGLVG	10	Unmodified	_VAALASGLVG_					0	0	0			REV__ENSG00000104549|ENST00000265896|SQLE	REV__ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.269287109375	2	429.258185	856.501818	0.76138	0.00032683	0.02322	9.9676E-06	0.7846	0.0003368	429.2580530757009	40.685	0.86652	40.562	39.967	40.833	-0.12317					49	23	3	0	0	0	0.03519	1	3622	3622		18.324	0	1	626340	+		82172	21451	57262	57355	91229	91229					0.0678268638581585
VAALHDVALV	10	Unmodified	_VAALHDVALV_					0	0	0			REV__ENSG00000184530|ENST00000329722|C6orf58	REV__ENSG00000184530|ENST00000329722|C6orf58	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2960205078125	2	504.297842	1006.58113	-0.31658	-0.00015965	-1.8243	-0.00091999	-2.1409	-0.0010796	504.29633338861873	61.589	1.2254	61.589	60.996	62.222	0					90	32	5	0	0	0	0.72219	2	7124	7124;7135		65.803	7.9919	1	15843000	+		82173	27678	57263	57356	91230;91231	91230					0.07810333339944009
VAALNELR	8	Unmodified	_VAALNELR_					0	0	0		ENST00000274811.8_1_5:175954527-175954785:-|nuORF	ENST00000274811.8_1_5:175954527-175954785:-|nuORF	ENST00000274811.8_1_5:175954527-175954785:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.2899475097656	2	443.261259	884.507966	-0.42008	-0.0001862	0.70933	0.00031442	0.28925	0.00012821	443.26134585621486	44.895	0.55069	44.684	44.399	44.95	-0.21109					19	13	2	0	0	0	0.027866	1	4169	4169		19.36	1.0356	1	135460			82174	11683	57264	57357	91232	91232					0.061092046173257586
VAALRALPL	9	Unmodified	_VAALRALPL_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.3055725097656	2	462.30547	922.596387	0.33111	0.00015307	-0.16818	-7.7751E-05	0.16293	7.5323E-05	462.305248326146	66.247	2.0939	66.277	65.624	67.718	0.030106					101	55	4	0	0	0	0.80658	1	7779	7779		38.806	3.6054	1	6320400	+		82175	28476	57265	57358	91233	91233					0.13199244927807285
VAALSGPPI	9	Unmodified	_VAALSGPPI_					0	0	0			REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF;REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF	REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.15155029296875	2	412.747453	823.480354	-0.27748	-0.00011453	-2.987	-0.0012329	-3.2645	-0.0013474	412.74618665317024	81.493	0.92931	81.517	80.968	81.897	0.023903					48	22	4	0	0	0	0.024487	1	10052	10052		31.955	7.7521	1	308170	+		82176	33395;33230	57266	57359	91234	91234					0.06155301357091503
VAALSGPPI	9	Unmodified	_VAALSGPPI_					0	0	0			REV__ENST00000479352.5_1_3:124802736-124844777:-|nuORF;REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF	REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	412.747453	823.480354	0.42826	0.00017676	-3.3492	-0.0013824	-2.9209	-0.0012056	412.74592394072425	81.478	0.69215	81.478	81.138	81.83	0	-0.043249	-0.00017968	NaN	31.955	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367410	+		82177	33395;33230	57266	57359							0.06155301357091503
VAALVIIGDL	10	Unmodified	_VAALVIIGDL_					0	0	0			REV__ENSG00000171180|ENST00000641868|OR2M4	REV__ENSG00000171180|ENST00000641868|OR2M4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.287109375	2	492.310418	982.606283	0.16753	8.2477E-05	-0.26354	-0.00012974	-0.09601	-4.7267E-05	492.3100362155253	68.468	0.54797	68.175	67.857	68.405	-0.29267					30	13	3	0	0	0	0.03519	1	8133	8133		21.96	1.013	1	457720	+		82178	26551	57267	57360	91235	91235					0.11428388142508084
VAALVLAFSGI	11	Unmodified	_VAALVLAFSGI_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.7592163085938	2	530.823692	1059.63283	-0.84007	-0.00044593	0.35477	0.00018832	-0.4853	-0.00025761	530.8237964194469	96.789	0.79866	96.789	96.571	97.37	0					22	17	2	0	0	0	0.024793	1	12341	12341		47.657	11.211	1	81765			82179	8108	57268	57361	91236	91236					0.10540077033851958
VAAMKRPE	8	Unmodified	_VAAMKRPE_					0	0	0			REV__ENST00000419533.1_1_1:19487631-19488132:-|nuORF	REV__ENST00000419533.1_1_1:19487631-19488132:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2496032714844	2	451.249837	900.485122	-0.90914	-0.00041025	0.83077	0.00037488	-0.078379	-3.5368E-05	451.25010789877774	37.313	1.1127	37.093	36.686	37.799	-0.2195					70	28	3	0	0	0	0.93274	1	2953	2953		47.916	5.4411	1	3238700	+		82180	32143	57269	57362	91237	91237					0.0308986222820522
VAANPEEA	8	Unmodified	_VAANPEEA_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.25628662109375	2	400.692875	799.371197	2.9851	0.0011961	-0.44816	-0.00017957	2.5369	0.0010165	400.69254149193944	24.992	0.76159	25.07	24.777	25.538	0.078344					32	17	3	0	0	0	0.027866	1	1139	1139		29.15	8.2026	1	477280	+		82181	20984	57270	57363	91238	91238					-0.03651329333058584
VAANPEEA	8	Unmodified	_VAANPEEA_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	400.692875	799.371197	-0.4173	-0.00016721	2.9408	0.0011784	2.5235	0.0010112	400.6938675130458	25.15	0.49173	25.115	24.86	25.351	-0.034397	0.05842	0.001251	NaN	29.15	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363350	+		82182	20984	57270	57363							-0.03651329333058584
VAARCHIV	8	Unmodified	_VAARCHIV_					0	0	0		ENST00000568570.1_1_16:31993258-32005419:+|nuORF	ENST00000568570.1_1_16:31993258-32005419:+|nuORF	ENST00000568570.1_1_16:31993258-32005419:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.2415771484375	2	434.744722	867.474891	0.90386	0.00039295	-0.8162	-0.00035484	0.087666	3.8112E-05	434.74483363139143	97.413	0.68087	97.276	96.969	97.65	-0.1367					23	14	2	0	0	0	0.027866	1	12057	12057		8.2313	0	1	61839			82183	16986	57271	57364	91239	91239					0.03585299293627031
VAARLVSPQ	9	Unmodified	_VAARLVSPQ_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.78289794921875	2	470.782359	939.550165	1.0503	0.00049448	-1.1985	-0.00056422	-0.14814	-6.974E-05	470.7816621766501	18.28	0.44257	18.124	17.953	18.396	-0.15637					17	8	3	0	0	0	0.59099	1	288	288		53.351	2.016	1	147100	+		82184	23429	57272	57365	91240	91240					0.0779718002570462
VAARLVSPQ	9	Unmodified	_VAARLVSPQ_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	470.782359	939.550165	1.0503	0.00049448	-1.1985	-0.00056422	-0.14814	-6.974E-05	470.7816621766501	18.28	0.44257	18.124	17.953	18.396	-0.15637	-0.0073204	-0.00044278	NaN	53.351	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147100	+		82185	23429	57272	57365							0.0779718002570462
VAARLVSPQ	9	Unmodified	_VAARLVSPQ_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.782359	939.550165	0.28476	0.00013406	-0.29666	-0.00013966	-0.011901	-5.6028E-06	470.7820571569211	18.342	0.44602	18.138	17.965	18.411	-0.20371	0.0073204	0.00040633	NaN	53.351	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162610	+		82186	23429	57272	57365							0.0779718002570462
VAARRKLN	8	Unmodified	_VAARRKLN_					0	0	0		chr19:56297531-56301968|496|11.07|0.34|5.04|+|0|EDDM13,EDDM13|2	chr19:56297531-56301968|496|11.07|0.34|5.04|+|0|EDDM13,EDDM13|2	chr19:56297531-56301968|496|11.07|0.34|5.04|+|0|EDDM13,EDDM13|2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.27886962890625	2	464.295968	926.577383	0.098615	4.5786E-05	1.7697	0.00082165	1.8683	0.00086744	464.2963623097674	51.124	0.36596	51.124	50.92	51.286	0					16	9	2	0	0	0	0.027866	1	5408	5408		31.955	6.5047	1	203700			82187	365	57273	57366	91241	91241					0.11115708356737741
VAASLVVLWL	10	Unmodified	_VAASLVVLWL_					0	0	0		ENSG00000001626|ENST00000003084|CFTR;nc|ENSG00000001626|P13569-2|CFTR;CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	ENSG00000001626|ENST00000003084|CFTR	ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.8152465820312	2	535.83406	1069.65357	-0.020724	-1.1105E-05	1.9251	0.0010315	1.9043	0.0010204	535.835098734879	71.92	0.29926	71.632	71.351	71.651	-0.28858					12	7	2	0	0	0	0.03519	1	8663	8663		30.504	4.9296	1	186930			82188	722	57274	57367	91242	91242					0.12152667413511153
VAASVAGLGFF	11	Unmodified	_VAASVAGLGFF_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7854614257812	2	519.784567	1037.55458	-0.078406	-4.0754E-05	-0.46992	-0.00024426	-0.54833	-0.00028501	519.7841337722485	48.647	0.98874	48.464	48.126	49.115	-0.18206					66	26	4	0	0	0	0.49334	1	4831	4831		76.774	1.7308	1	3658300	+		82189	22224	57275	57368	91243	91243					0.037306444486148393
VAAVAATGEP	10	Unmodified	_VAAVAATGEP_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2547607421875	2	443.23745	884.460347	-0.28443	-0.00012607	0.94634	0.00041945	0.66191	0.00029338	443.2378238023287	53.624	0.95615	53.72	53.336	54.292	0.095669					59	26	4	0	0	0	0.03519	1	5729	5729		82.305	0	1	3174700	+		82190	36644	57276	57369	91244	91244					0.013495056264787308
VAAVLRNIK	9	Unmodified	_VAAVLRNIK_					0	0	0		nc|ENSG00000116120|Q9NSD9-2|FARSB;FARSB|p.V568Sfs*12|1|0.07|ENSG00000116120|chr2:222571939-222571940|-/TAGGGAATGGTGCTGAAGA|frameshift_variant;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2730712890625	2	492.321651	982.62875	-0.20079	-9.8852E-05	-0.015115	-7.4415E-06	-0.2159	-0.00010629	492.32155331342096	22.332	0.51353	22.332	22.106	22.619	0					23	10	3	0	0	0	0.024412	1	806	806		17.365	0	1	137470			82191	3520	57277	57370	91245	91245					0.13674032330789032
VAAVRIPSL	9	Unmodified	_VAAVRIPSL_					0	0	0		ENST00000574364.1_1_16:11945522-11945627:+|nuORF	ENST00000574364.1_1_16:11945522-11945627:+|nuORF	ENST00000574364.1_1_16:11945522-11945627:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2328796386719	2	463.295102	924.575651	-0.039445	-1.8274E-05	0.30006	0.00013902	0.26062	0.00012074	463.29505553481977	53.401	0.47018	53.497	53.23	53.7	0.095669					24	12	3	0	0	0	0.022924	1	5736	5736		85.359	0	1	345720			82192	17083	57278	57371	91246	91246					0.11034654548143408
VAAVRIPSL	9	Unmodified	_VAAVRIPSL_					0	0	0		ENST00000574364.1_1_16:11945522-11945627:+|nuORF	ENST00000574364.1_1_16:11945522-11945627:+|nuORF	ENST00000574364.1_1_16:11945522-11945627:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	463.295102	924.575651	-0.60743	-0.00028142	0.81397	0.00037711	0.20654	9.5687E-05	463.2953239801791	53.596	0.43626	53.448	53.239	53.675	-0.14723	-0.039029	0.00032037	NaN	85.359	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430420			82193	17083	57278	57371							0.11034654548143408
VAAVVAALSIL	11	Unmodified	_VAAVVAALSIL_					0	0	0			REV__ENSG00000261272|ENST00000561890|MUC22	REV__ENSG00000261272|ENST00000561890|MUC22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2982177734375	2	513.831517	1025.64848	-0.027327	-1.4041E-05	-1.0314	-0.00052994	-1.0587	-0.00054398	513.831360812665	94.888	0.48019	94.892	94.564	95.045	0.0033798					12	10	2	0	0	0	0.024738	1	12059	12059		19.997	3.5236	1	37542	+		82194	29112	57279	57372	91247	91247					0.13668363550914364
VACFYEATDS	10	Unmodified	_VACFYEATDS_					0	0	0			REV__nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	REV__nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8314819335938	2	553.228965	1104.44338	-0.81371	-0.00045017	3.2856	0.0018177	2.4719	0.0013675	553.2306438912528	48.849	0.64634	48.569	48.288	48.934	-0.27977					24	17	2	0	0	0	0.03519	1	4866	4866		27.882	0	1	104700	+		82195	37107	57280	57373	91248	91248					-0.10466783041647432
VADEFLVLN	9	Unmodified	_VADEFLVLN_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.2746887207031	2	510.274032	1018.53351	0.071912	3.6695E-05	-0.57535	-0.00029359	-0.50344	-0.00025689	510.2737196623369	90.544	2.1866	90.557	90.161	92.347	0.013443					125	52	4	0	0	0	0.067814	1	11419	11419		122.18	0	1	33874000	+		82196	27972	57281	57374	91249	91249					0.024986343490809304
VADIHQKV	8	Unmodified	_VADIHQKV_					0	0	0			REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	REV__ENST00000555762.1_1_14:94524146-94547480:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.73492431640625	2	455.261259	908.507966	0.15113	6.8803E-05	-0.14248	-6.4865E-05	0.0086481	3.9372E-06	455.26102841129824	32.245	1.0065	32.009	31.74	32.746	-0.23666					44	23	4	0	0	0	0.027866	1	2221	2221		12.959	0	1	282470	+		82197	20860	57282	57375	91250	91250					0.05005204617327763
VADILPKV	8	Unmodified	_VADILPKV_					0	0	0			REV__ENSG00000048342|ENST00000424120|CC2D2A	REV__ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.75872802734375	2	427.770929	853.527304	-0.049394	-2.1129E-05	1.7442	0.00074613	1.6948	0.000725	427.77055402627497	41.151	0.24393	41.151	40.981	41.225	0					9	6	2	0	0	0	0.027866	1	3656	3656		85.359	25.066	1	136820	+		82198	20137	57283	57376	91251	91251					0.09468160908227219
VADILPKV	8	Unmodified	_VADILPKV_					0	0	0			REV__ENSG00000048342|ENST00000424120|CC2D2A	REV__ENSG00000048342|ENST00000424120|CC2D2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7583312988281	2	427.770929	853.527304	0.21684	9.2757E-05	-0.18526	-7.9249E-05	0.031578	1.3508E-05	427.770690621798	41.694	1.4615	41.571	40.881	42.343	-0.12299					92	38	3	0	0	0	0.027866	1	3596	3596		71.296	0	1	574380	+		82199	20137	57283	57376	91252	91252					0.09468160908227219
VADIRDSR	8	Unmodified	_VADIRDSR_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2875061035156	2	466.251423	930.488293	0.17662	8.2348E-05	-3.7536	-0.0017501	-3.577	-0.0016678	466.24941194395166	93.855	0.69012	93.861	93.519	94.209	0.0059814					30	16	3	0	0	0	0.027866	1	11863	11863		53.351	12.779	1	340630	+		82200	24642	57284	57377	91253	91253					0.02026828606574327
VADKIHSV	8	Unmodified	_VADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.74786376953125	2	434.747985	867.481417	-0.025013	-1.0874E-05	0.4065	0.00017672	0.38149	0.00016585	434.7479336077456	32.861	0.64259	32.695	32.395	33.038	-0.16565					44	15	4	0	0	0	0.47665	1	2286	2286		87.754	16.376	1	898630			82201	11045	57285	57378	91254	91254					0.04237515726003949
VADKIHSV	8	Unmodified	_VADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.747985	867.481417	-0.37545	-0.00016323	2.8743	0.0012496	2.4988	0.0010863	434.74803294955507	32.861	0.41709	32.861	32.679	33.096	0	0.1125	0.0020464	NaN	87.754	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140830			82202	11045	57285	57378							0.04237515726003949
VADKIHSV	8	Unmodified	_VADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	434.747985	867.481417	-0.44456	-0.00019327	0.88783	0.00038598	0.44327	0.00019271	434.74812774173694	32.752	0.45168	32.759	32.553	33.005	0.0066261	0.010532	0.00031926	NaN	87.754	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114840			82203	11045	57285	57378							0.04237515726003949
VADKIHSV	8	Unmodified	_VADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	434.747985	867.481417	0.37099	0.00016129	0.38003	0.00016522	0.75102	0.00032651	434.7478876966873	32.635	0.49427	32.697	32.428	32.923	0.062885	-0.050802	-0.00012227	NaN	87.754	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142150			82204	11045	57285	57378							0.04237515726003949
VADKIHSV	8	Unmodified	_VADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	434.747985	867.481417	-0.099892	-4.3428E-05	0.54211	0.00023568	0.44222	0.00019225	434.747981928646	32.931	0.65233	32.7	32.263	32.916	-0.23107	-0.048215	1.8655E-05	NaN	87.754	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461840			82205	11045	57285	57378							0.04237515726003949
VADKIHSV	8	Unmodified	_VADKIHSV_					0	0	0		ENSG00000276023|ENST00000617516|DUSP14;DUSP14|p.T107Pfs*9|1|0.45|ENSG00000276023|chr17:37512589-37512589|C/-|frameshift_variant	ENSG00000276023|ENST00000617516|DUSP14	ENSG00000276023|ENST00000617516|DUSP14	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	434.747985	867.481417	0.19999	8.6946E-05	0.14464	6.2881E-05	0.34463	0.00014983	434.74782458824774	32.977	0.56724	32.777	32.489	33.056	-0.20019	0.029006	-0.00032694	NaN	87.754	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541120			82206	11045	57285	57378							0.04237515726003949
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.282470703125	2	538.283877	1074.5532	-1.17	-0.00062978	0.40034	0.0002155	-0.76963	-0.00041428	538.283868176392	44.271	0.81908	44.166	43.925	44.744	-0.10468					53	21	3	0	0	0	0.12914	1	4116	4116		104.06	56.399	1	2691400			82207	3852	57286	57379	91255	91255					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2828369140625	2	538.283877	1074.5532	-1.2059	-0.00064912	0.45419	0.00024448	-0.75171	-0.00040463	538.2839093682499	44.456	1.2907	44.212	43.94	45.231	-0.2444					67	34	3	0	0	0	0.15366	3	4123	4123;4134;4146		98.629	43.58	1	2959400			82208	3852	57286	57379	91256;91257;91258	91256					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2832641601562	2	538.283877	1074.5532	-1.8113	-0.000975	1.1404	0.00061383	-0.67097	-0.00036117	538.2842353230984	44.426	0.72816	44.206	43.9	44.628	-0.21939					45	18	3	0	0	0	0.2101	2	4127	4127;4141		87.696	48.444	1	2992400			82209	3852	57286	57379	91259;91260	91259					0.018906870881892246
VADKVHLMY	9	Unmodified	_VADKVHLMY_					0	0	0		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.283877	1074.5532	-1.0284	-0.00055358	-6.3917	-0.0034405	-7.4201	-0.0039941	538.2804357197432	44.182	0.30759	44.219	43.998	44.306	0.0369	0.018155	-0.006208	NaN	104.06	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1818100			82210	3852	57286	57379							0.018906870881892246
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_		VADKVHLM(1)Y		VADKVHLM(110)Y	0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.2817993164062	2	546.281334	1090.54812	-0.51565	-0.00028169	1.1768	0.00064286	0.66114	0.00036117	546.2817990793123	39.718	0.6652	39.495	39.149	39.815	-0.22311					38	16	3	0	0	0	0.10174	1	3378	3378		110.12	51.338	1	1411100			82211	3852	57286	57380	91261	91261		150			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_					0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.281334	1090.54812	-0.53756	-0.00029366	1.2286	0.00067115	0.69102	0.00037749	546.2818647462684	39.52	0.57539	39.355	39.116	39.692	-0.16458	-0.071636	3.0319E-05	NaN	110.12	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1499900			82212	3852	57286	57380				150			0.006463832255803936
VADKVHLMY	9	Oxidation (M)	_VADKVHLM(Oxidation (M))Y_					0	0	1		ENST00000572021.5_1_17:54969063-54989474:-|nuORF;ENSG00000121060|ENST00000316881|TRIM25	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.281334	1090.54812	-0.46909	-0.00025625	1.175	0.00064187	0.70589	0.00038562	546.2818387128715	39.66	0.64705	39.43	39.164	39.811	-0.2302	0.0031658	-2.8245E-05	NaN	110.12	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1408300			82213	3852	57286	57380				150			0.006463832255803936
VADKVLLP	8	Unmodified	_VADKVLLP_					0	0	0		HSPE1|p.G68A|1|0.08|ENSG00000115541|chr2:197503073-197503073|G/C|missense_variant	HSPE1|p.G68A|1|0.08|ENSG00000115541|chr2:197503073-197503073|G/C|missense_variant	HSPE1|p.G68A|1|0.08|ENSG00000115541|chr2:197503073-197503073|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7579345703125	2	427.770929	853.527304	0.13514	5.7809E-05	-0.2112	-9.0345E-05	-0.076057	-3.2535E-05	427.77063935193377	41.792	1.4785	41.562	40.964	42.442	-0.23029					85	39	3	0	0	0	0.027866	1	3663	3663		82.305	0	1	591500			82214	17755	57287	57381	91262	91262					0.09468160908227219
VADLVENSY	9	Unmodified	_VADLVENSY_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	OPSCC_40_ClassI_Rep-1	4	505.24560546875	2	505.245472	1008.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.458	1	56.294	55.794	56.794	-0.16347								0	0	0	0.31227	1	6115	6115		67.494	5.3863	1				82215	3480	57288	57382	91263	91263					-0.027508329272791343
VADLVENSY	9	Unmodified	_VADLVENSY_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	OPSCC_40_ClassI_Rep-1	4	505.245849609375	2	505.245472	1008.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.543	1	56.376	55.876	56.876	-0.1672								0	0	0	0.3705	1	6128	6128		63.534	14.092	1				82216	3480	57288	57382	91264	91264					-0.027508329272791343
VADLVENSY	9	Unmodified	_VADLVENSY_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	OPSCC_40_ClassI_Rep-2	5	505.24542236328125	2	505.245472	1008.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.606	1	56.403	55.903	56.903	-0.20209								0	0	0	0.061278	1	6137	6137		104.06	16.302	1				82217	3480	57288	57382	91265	91265					-0.027508329272791343
VADLVENSY	9	Unmodified	_VADLVENSY_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	OPSCC_40_ClassI_Rep-3	6	505.2455139160156	2	505.245472	1008.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.584	1	56.36	55.86	56.86	-0.2248								0	0	0	0.061278	1	6121	6121		104.06	5.4274	1				82218	3480	57288	57382	91266	91266					-0.027508329272791343
VADLVENSY	9	Unmodified	_VADLVENSY_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	OPSCC_40_ClassI_Rep-3	6	505.245849609375	2	505.245472	1008.47639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.657	1	56.432	55.932	56.932	-0.2248								0	0	0	0.3705	1	6132	6132		63.534	12.198	1				82219	3480	57288	57382	91267	91267					-0.027508329272791343
VADRNEIIL	9	Unmodified	_VADRNEIIL_					0	0	0			REV__nc|ENSG00000175054|Q13535-3|ATR	REV__nc|ENSG00000175054|Q13535-3|ATR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8173828125	2	521.798206	1041.58186	-0.73527	-0.00038366	1.02	0.00053221	0.28469	0.00014855	521.7988088488902	64.723	0.48913	64.769	64.486	64.975	0.045502					22	12	2	0	0	0	0.023417	1	7573	7573		68.787	6.6794	1	381330	+		82220	36956	57289	57383	91268	91268					0.06273127989015848
VADVPEKP	8	Unmodified	_VADVPEKP_					0	0	0		ENST00000482153.1_1_10:135122453-135123793:+|nuORF;ENSG00000198546|ENST00000361518|ZNF511;nc|ENSG00000198546|Q8NB15-1|ZNF511	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.75836181640625	2	427.734543	853.454533	0.21395	9.1512E-05	-1.8387	-0.00078647	-1.6248	-0.00069496	427.73399186298235	41.261	0.45027	41.138	40.98	41.43	-0.12317					17	12	2	0	0	0	0.027866	1	3698	3698		102.77	20.468	1	195260			82221	10146	57290	57384	91269	91269					0.021944071148027433
VAELREKL	8	Unmodified	_VAELREKL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.7353515625	2	479.290017	956.565481	-0.22462	-0.00010766	0.18455	8.8453E-05	-0.040068	-1.9204E-05	479.29012788393067	60.348	0.83153	60.135	59.888	60.719	-0.2134					53	21	4	0	0	0	0.027866	1	6900	6900		30.504	0	1	1138300			82222	4672	57291	57385	91270	91270					0.0854604682289164
VAEQLRKP	8	Unmodified	_VAEQLRKP_					0	0	0			REV__ENST00000609398.5_1_17:1616063-1617149:-|nuORF	REV__ENST00000609398.5_1_17:1616063-1617149:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	470.230224609375	2	470.782359	939.550165	-0.2267	-0.00010673	0.20564	9.6812E-05	-0.021058	-9.9139E-06	470.7827603548508	30.135	0.24316	30.143	29.962	30.205	0.0086708					6	5	2	0	0	0	0.027866	1	1876	1876		25.45	0	1	44189	+		82223	35983	57292	57386	91271	91271					0.07797180025715988
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	427.7581787109375	2	427.758352	853.502152	-0.044589	-1.9073E-05	0.091156	3.8993E-05	0.046567	1.992E-05	427.758417543511	41.134	1.838	41.134	40.551	42.389	0					99	52	3	0	0	0	0.37125	2	3704	3656;3704		101.21	0	1	21513000	+		82224	34853	57293	57387	91272;91273	91273					0.06954106105649771
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	427.75836181640625	2	427.758352	853.502152	0.2042	8.7347E-05	-0.15936	-6.8168E-05	0.044835	1.9179E-05	427.75831388810724	41.274	1.8482	41.151	40.547	42.395	-0.12317					97	52	3	0	0	0	0.2822	3	3698	3674;3698;3710		119.56	5.4584	1	20883000	+		82225	34853	57293	57387	91274;91275;91276	91275					0.06954106105649771
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.7585754394531	2	427.758352	853.502152	0.06996	2.9926E-05	-0.089386	-3.8235E-05	-0.019425	-8.3094E-06	427.7582931903384	41.226	1.5359	41.09	40.488	42.024	-0.13553					95	40	4	0	0	0	0.46709	2	3616	3596;3616		88.643	5.3557	1	10095000	+		82226	34853	57293	57387	91277;91278	91278					0.06954106105649771
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	427.7579345703125	2	427.758352	853.502152	-0.20028	-8.5672E-05	0.11178	4.7815E-05	-0.088499	-3.7856E-05	427.75838374021447	41.473	1.5917	41.243	40.624	42.216	-0.23029					89	42	3	0	0	0	0.46709	1	3663	3663		88.643	0	1	9164000	+		82227	34853	57293	57387	91279	91279					0.06954106105649771
VAFDSVMSRV	10	Oxidation (M)	_VAFDSVM(Oxidation (M))SRV_		VAFDSVM(1)SRV		VAFDSVM(120)SRV	0	0	1			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.7800903320312	2	563.781699	1125.54884	-0.87149	-0.00049133	-2.6438	-0.0014905	-3.5153	-0.0019819	563.7801842444727	60.819	1.0976	60.819	60.546	61.643	0					65	28	4	0	0	0	0.24462	2	7007	7007;7017		115.49	35.781	1	3741200	+		82228	20160	57294	57388	91280;91281	91280		620			-0.008908221253477677
VAFDSVMSRV	10	Oxidation (M)	_VAFDSVM(Oxidation (M))SRV_		VAFDSVM(1)SRV		VAFDSVM(88)SRV	0	0	1			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.77978515625	2	563.781699	1125.54884	-0.63828	-0.00035985	-3.0403	-0.001714	-3.6785	-0.0020739	563.779941007522	61.068	1.5661	60.854	60.531	62.097	-0.21339					86	41	4	0	0	0	0.50517	2	7027	7015;7027		87.696	34.76	1	3824700	+		82229	20160	57294	57388	91282;91283	91283		620			-0.008908221253477677
VAFDSVMSRV	10	Oxidation (M)	_VAFDSVM(Oxidation (M))SRV_		VAFDSVM(1)SRV		VAFDSVM(110)SRV	0	0	1			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.7799682617188	2	563.781699	1125.54884	-1.579	-0.00089019	-2.1055	-0.0011871	-3.6845	-0.0020773	563.7804962290157	60.692	0.89773	60.771	60.465	61.363	0.078888					69	23	4	0	0	0	0.28861	2	6912	6912;6923		110.12	34.76	1	3965000	+		82230	20160	57294	57388	91284;91285	91284		620			-0.008908221253477677
VAFDSVMSRV	10	Oxidation (M)	_VAFDSVM(Oxidation (M))SRV_					0	0	1			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	563.781699	1125.54884	-0.87149	-0.00049133	-2.6438	-0.0014905	-3.5153	-0.0019819	563.7801842444727	60.819	1.0976	60.819	60.546	61.643	0	0.0041728	-0.00010849	NaN	115.49	65	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3741200	+		82231	20160	57294	57388				620			-0.008908221253477677
VAFDSVMSRV	10	Oxidation (M)	_VAFDSVM(Oxidation (M))SRV_					0	0	1			REV__ENSG00000050438|ENST00000453097|SLC4A8	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	563.781699	1125.54884	-1.579	-0.00089019	-2.1055	-0.0011871	-3.6845	-0.0020773	563.7804962290157	60.692	0.89773	60.771	60.465	61.363	0.078888	-0.043662	0.00049844	NaN	115.49	69	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3965000	+		82232	20160	57294	57388				620			-0.008908221253477677
VAFLGLYDR	9	Unmodified	_VAFLGLYDR_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.2894287109375	2	527.290017	1052.56548	0.042688	2.2509E-05	1.8713	0.00098672	1.914	0.0010092	527.2907758574759	103.95	1.253	103.83	103.52	104.77	-0.12561					50	32	3	0	0	0	0.80003	1	12924	12924		39.253	0.44669	1	435140	+		82233	22316	57295	57389	91286	91286					0.04130046822888289
VAFLIILI	8	Unmodified	_VAFLIILI_					0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7667236328125	2	451.30969	900.604826	-0.5338	-0.00024091	-3.9026	-0.0017613	-4.4364	-0.0020022	451.307846973277	34.569	0.82861	34.394	34.168	34.997	-0.17557					35	20	2	0	0	0	0.027866	1	2631	2631		24.504	7.799	1	296400	+		82234	36990	57296	57390	91287	91287					0.15054798844414563
VAGASRIIG	9	Unmodified	_VAGASRIIG_					0	0	0		ENSG00000197894|ENST00000296412|ADH5;ENST00000512621.5_1_4:99993722-100006301:-|nuORF;ENST00000508511.5_1_4:99997418-100009857:-|nuORF	ENSG00000197894|ENST00000296412|ADH5	ENSG00000197894|ENST00000296412|ADH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.2561950683594	2	422.255977	842.497401	-0.42992	-0.00018154	0.24941	0.00010532	-0.18051	-7.6221E-05	422.25596144628486	21.843	1.0959	21.631	21.315	22.411	-0.21222					43	22	3	0	0	0	0.33184	1	688	688		71.378	0	1	648010			82235	10064	57297	57391	91288	91288					0.06985221962918331
VAGELEQLKA	10	Unmodified	_VAGELEQLKA_					0	0	0			REV__nc|ENSG00000133026|P35580|MYH10	REV__nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	529.298039	1056.58152	-0.76394	-0.00040435	-0.11411	-6.0399E-05	-0.87805	-0.00046475	529.2980663834438	55.984	1.0078	56.082	55.744	56.752	0.097893					72	27	4	0	0	0	0.52982	1	6138	6138		84.916	5.2029	1	4160100	+		82236	23338	57298	57392	91289	91289					0.055497082691545074
VAGELNLL	8	Unmodified	_VAGELNLL_					0	0	0		ENST00000367112.1_2_6:158499176-158499314:+|nuORF	ENST00000367112.1_2_6:158499176-158499314:+|nuORF	ENST00000367112.1_2_6:158499176-158499314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2298278808594	2	414.744911	827.475269	-0.02708	-1.1231E-05	-0.41685	-0.00017288	-0.44393	-0.00018412	414.7445842082093	27.08	0.48342	27.067	26.869	27.352	-0.012981					18	12	2	0	0	0	0.027866	1	1433	1433		26.796	14.589	1	159220			82237	12840	57299	57393	91290	91290					0.05462997494487354
VAGEQAVGT	9	Unmodified	_VAGEQAVGT_					0	0	0		chr6:79312480-79313189|408|27.42|0.0|21.39|-|2|LCAL1,LCAL1|4	chr6:79312480-79313189|408|27.42|0.0|21.39|-|2|LCAL1,LCAL1|4	chr6:79312480-79313189|408|27.42|0.0|21.39|-|2|LCAL1,LCAL1|4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.24835205078125	2	416.213975	830.413397	-0.34837	-0.000145	2.3361	0.00097232	1.9877	0.00082732	416.21511888778974	35.82	0.83908	35.82	35.531	36.37	0					41	22	3	0	0	0	0.024292	1	2801	2801		40.778	18.818	1	261890			82238	414	57300	57394	91291	91291					-0.008593539246589899
VAGFLYEL	8	Unmodified	_VAGFLYEL_					0	0	0			REV__ENST00000485009.1_1_7:115863047-115889401:+|nuORF	REV__ENST00000485009.1_1_7:115863047-115889401:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7582092285156	2	456.247286	910.48002	-0.40373	-0.0001842	0.29907	0.00013645	-0.10466	-4.775E-05	456.24741626787926	47.213	0.43206	47.272	46.957	47.389	0.059097					17	11	2	0	0	0	0.027866	1	4632	4632		62.978	29.463	1	225490	+		82239	32877	57301	57395	91292	91292					0.021198816372361762
VAGGEAVQV	9	Unmodified	_VAGGEAVQV_					0	0	0			REV__ENST00000602622.5_1_16:67693367-67693844:-|nuORF	REV__ENST00000602622.5_1_16:67693367-67693844:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2483215332031	2	415.224342	828.434132	-0.21257	-8.8265E-05	-4.2757	-0.0017754	-4.4883	-0.0018636	415.22290398909945	35.837	0.36757	35.837	35.728	36.096	0					11	9	2	0	0	0	0.021088	1	2789	2789		90.777	0	1	59753	+		82240	35876	57302	57396	91293	91293					0.013052364550048878
VAGGLRRF	8	Unmodified	_VAGGLRRF_					0	0	0			REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	REV__ENST00000003100.12_1_7:91761115-91763805:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.24725341796875	2	438.264136	874.51372	0.071424	3.1302E-05	-0.32373	-0.00014188	-0.2523	-0.00011058	438.263775113946	26.306	1.0048	26.388	25.836	26.841	0.081291					50	23	3	0	0	0	0.027866	1	1338	1338		35.201	9.6267	1	175680	+		82241	29256	57303	57397	91294	91294					0.07144347919654592
VAGGWTLVTV	10	Unmodified	_VAGGWTLVTV_					0	0	0		ENST00000396791.7_1_4:175205180-175219135:+|nuORF	ENST00000396791.7_1_4:175205180-175219135:+|nuORF	ENST00000396791.7_1_4:175205180-175219135:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.79522705078125	2	501.784567	1001.55458	-0.13822	-6.9357E-05	-0.80179	-0.00040233	-0.94001	-0.00047168	501.78419419985875	52.676	0.20044	52.549	52.472	52.672	-0.12705					6	4	2	0	0	0	0.03519	1	5476	5476		37.159	12.64	1	142960			82242	13564	57304	57398	91295	91295					0.05386644448617517
VAGGWTLVTV	10	Unmodified	_VAGGWTLVTV_					0	0	0		ENST00000396791.7_1_4:175205180-175219135:+|nuORF	ENST00000396791.7_1_4:175205180-175219135:+|nuORF	ENST00000396791.7_1_4:175205180-175219135:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3150939941406	2	501.784567	1001.55458	-0.44259	-0.00022209	-2.2346	-0.0011213	-2.6772	-0.0013434	502.28621541723766	60.251	0.23816	60.075	59.96	60.198	-0.1761					8	5	2	0	0	0	0.03519	1	6718	6718		84.916	15.288	1	52185			82243	13564	57304	57398	91296	91296					0.05386644448617517
VAGISIALLS	10	Unmodified	_VAGISIALLS_					0	0	0		ENSG00000205846|ENST00000382073|CLEC6A	ENSG00000205846|ENST00000382073|CLEC6A	ENSG00000205846|ENST00000382073|CLEC6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.748779296875	2	472.294768	942.574983	0.40336	0.00019051	-0.45939	-0.00021697	-0.05603	-2.6463E-05	472.29444281059216	49.956	0.71564	49.85	49.486	50.202	-0.10558					32	18	2	0	0	0	0.03519	1	5003	5003		37.159	0	1	1422500			82244	10449	57305	57399	91297	91297					0.10139815108414041
VAGKPAGLN	9	Unmodified	_VAGKPAGLN_					0	0	0			REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.5220031738281	2	413.742702	825.470852	1.0734	0.00044413	-0.58354	-0.00024144	0.4899	0.00020269	413.7423021252428	36.725	0.56494	36.725	36.44	37.005	0					31	14	3	0	0	0	0.024294	1	2979	2979		37.159	0	1	702860	+		82245	35254	57306	57400	91298	91298					0.05113533071562415
VAGKRIKP	8	Unmodified	_VAGKRIKP_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7718505859375	2	434.789987	867.565421	-0.45041	-0.00019583	-0.19074	-8.2932E-05	-0.64115	-0.00027876	434.79182711589976	25.288	0.55852	25.288	25.094	25.652	0					23	13	3	0	0	0	0.027866	1	1223	1223		21.702	13.471	1	189310	+		82246	19173	57307	57401	91299	91299					0.12634091613540477
VAGLCAIGPSP	11	Unmodified	_VAGLCAIGPSP_					0	0	0		ENSG00000015532|ENST00000017003|XYLT2;ENST00000571021.1_1_17:48437265-48437649:+|nuORF	ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3057556152344	2	492.762778	983.511002	-0.57025	-0.000281	1.174	0.00057851	0.60376	0.00029751	492.76372287588725	84.752	0.5387	84.68	84.468	85.007	-0.072769					22	12	2	0	0	0	0.024749	1	10630	10630		37.159	6.6555	1	64913			82247	934	57308	57402	91300	91300					0.01858711679813041
VAGLGWEVN	9	Unmodified	_VAGLGWEVN_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2821350097656	2	472.745442	943.476331	0.7102	0.00033574	-0.98369	-0.00046503	-0.27349	-0.00012929	472.744900756241	51.616	0.82543	51.497	51.043	51.869	-0.11876					42	21	3	0	0	0	0.024386	1	5251	5251		25.45	4.5032	1	577960			82248	8462	57309	57403	91301	91301					0.00233211863383076
VAGPGPIGR	9	Unmodified	_VAGPGPIGR_					0	0	0		ENSG00000182768|ENST00000379095|NGRN;nc|ENSG00000182768|Q9NPE2-3|NGRN;ENST00000331497.3_1_15:90808929-90809136:+|nuORF	ENSG00000182768|ENST00000379095|NGRN	ENSG00000182768|ENST00000379095|NGRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2276916503906	2	412.24287	822.471186	1.5457	0.0006372	-0.93155	-0.00038403	0.61413	0.00025317	412.2423666315011	36.734	0.75856	36.525	36.24	36.999	-0.2092					29	18	2	0	0	0	0.024386	1	2926	2926		18.324	0	1	482310			82249	9161	57310	57404	91302	91302					0.05284952791430442
VAGPLRPGL	9	Unmodified	_VAGPLRPGL_					0	0	0			REV__nc|ENSG00000108963|Q9BZG8-5|DPH1	REV__nc|ENSG00000108963|Q9BZG8-5|DPH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.2745361328125	2	440.27417	878.533787	0.14736	6.4881E-05	-0.2494	-0.0001098	-0.10203	-4.4922E-05	440.2740269953773	42.966	0.76336	42.827	42.521	43.284	-0.13929					50	20	3	0	0	0	0.33184	2	3967	3967;3979		71.378	2.8932	1	12225000	+		82250	36559	57311	57405	91303;91304	91303					0.08966098859605154
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.75018310546875	2	416.749996	831.485439	0.58529	0.00024392	-1.2373	-0.00051567	-0.65206	-0.00027175	416.7497036922404	61.092	1.1763	61.092	60.692	61.868	0					84	30	5	0	0	0	0.1848	4	7070	7049;7059;7070;7082		143.02	0	1	7552100	+		82251	22684	57312	57406	91305;91306;91307;91308	91307					0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.75054931640625	2	416.749996	831.485439	0.27807	0.00011589	-0.79822	-0.00033266	-0.52015	-0.00021677	416.74985792281075	61.361	1.1326	61.134	60.706	61.839	-0.22663					98	29	7	0	0	0	0.1848	3	7063	7063;7074;7088		143.02	0	1	7794900	+		82252	22684	57312	57406	91309;91310;91311	91309					0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MSMS	OPSCC_39_ClassI_Rep-3	3	416.75	2	416.749996	831.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.962	1	61.033	60.533	61.533	0.071125								0	0	0	0.23738	1	6954	6954		128.86	0	1		+		82253	22684	57312	57406	91312	91312					0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MSMS	OPSCC_39_ClassI_Rep-3	3	416.75	2	416.749996	831.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.095	1	61.166	60.666	61.666	0.071125								0	0	0	0.32265	1	6976	6976		115.46	0	1		+		82254	22684	57312	57406	91313	91313					0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MSMS	OPSCC_39_ClassI_Rep-3	3	416.75	2	416.749996	831.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.174	1	61.245	60.745	61.745	0.071125								0	0	0	0.23738	1	6989	6989		128.86	0	1		+		82255	22684	57312	57406	91314	91314					0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MSMS	OPSCC_40_ClassI_Rep-2	5	416.7499694824219	2	416.749996	831.485439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.187	1	61.01	60.51	61.51	-0.1761								0	0	0	0.32265	1	6842	6842		115.46	0	1		+		82256	22684	57312	57406	91315	91315					0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.7504577636719	2	416.749996	831.485439	-0.30644	-0.00012771	0.42533	0.00017726	0.11889	4.9547E-05	416.7501602329101	61.364	0.57579	61.107	60.888	61.464	-0.25725					37	13	4	0	0	0	0.50239	1	6848	6848		85.359	0	1	1046700	+		82257	22684	57312	57406	91316	91316					0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	416.749996	831.485439	0.58529	0.00024392	-1.2373	-0.00051567	-0.65206	-0.00027175	416.7497036922404	61.092	1.1763	61.092	60.692	61.868	0	-0.018123	-0.00072741	NaN	143.02	84	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7552100	+		82258	22684	57312	57406							0.06295605219713707
VAGPTFKL	8	Unmodified	_VAGPTFKL_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	416.749996	831.485439	-0.23174	-9.6579E-05	1.7496	0.00072913	1.5178	0.00063255	416.7505724255866	61.312	0.89671	61.106	60.695	61.592	-0.20599	-0.0034505	0.0017622	NaN	143.02	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1131400	+		82259	22684	57312	57406							0.06295605219713707
VAGQAHAQVTW	11	Unmodified	_VAGQAHAQVTW_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.2992553710938	2	584.298904	1166.58326	-0.95584	-0.0005585	-0.14073	-8.2226E-05	-1.0966	-0.00064072	584.2987749673964	43.98	0.966	43.876	43.583	44.549	-0.10468					72	25	4	0	0	0	0.012363	4	4078	4056;4066;4078;4091		136.99	43.794	1	11089000			82260	5591	57313	57407	91317;91318;91319;91320	91319					0.006627620777635457
VAGQAHAQVTW	11	Unmodified	_VAGQAHAQVTW_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.2990112304688	2	584.298904	1166.58326	-1.7552	-0.0010256	0.74771	0.00043689	-1.0075	-0.0005887	584.2993187288533	44.13	1.1236	43.886	43.593	44.717	-0.2444					85	29	5	0	0	0	0.011513	4	4083	4071;4083;4096;4110		138.06	50.308	1	11391000			82261	5591	57313	57407	91321;91322;91323;91324	91322					0.006627620777635457
VAGQAHAQVTW	11	Unmodified	_VAGQAHAQVTW_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.299072265625	2	584.298904	1166.58326	-1.5427	-0.00090143	0.54058	0.00031586	-1.0022	-0.00058557	584.299191054455	44.137	1.035	43.918	43.672	44.707	-0.21939					79	27	4	0	0	0	0.016619	4	4068	4068;4078;4089;4102		131.62	46.362	1	11631000			82262	5591	57313	57407	91325;91326;91327;91328	91325					0.006627620777635457
VAGQTGLHK	9	Unmodified	_VAGQTGLHK_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	455.7589111328125	2	455.758884	909.503215	0.41636	0.00018976	-0.20392	-9.2938E-05	0.21245	9.6824E-05	455.7585412647314	47.131	0.75663	47.131	46.772	47.529	0					38	20	3	0	0	0	0.23085	1	4703	4703		84.916	10.941	1	2761600	+		82263	22544	57314	57408	91329	91329					0.04484320474557535
VAGQTGLHK	9	Unmodified	_VAGQTGLHK_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	455.75921630859375	2	455.758884	909.503215	0.65155	0.00029695	-0.6761	-0.00030814	-0.02455	-1.1189E-05	455.75840664698836	47.295	0.69305	47.142	46.817	47.51	-0.15301					45	18	4	0	0	0	0.27161	1	4709	4709		79.451	5.4763	1	2586900	+		82264	22544	57314	57408	91330	91330					0.04484320474557535
VAGQTGLHK	9	Unmodified	_VAGQTGLHK_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	455.7582092285156	2	455.758884	909.503215	-0.36245	-0.00016519	0.55222	0.00025168	0.18978	8.6492E-05	455.7588528392663	47.101	0.68038	47.16	46.842	47.522	0.059097					41	18	4	0	0	0	0.16468	1	4632	4632		96.19	10.831	1	3474500	+		82265	22544	57314	57408	91331	91331					0.04484320474557535
VAGRNVLR	8	Unmodified	_VAGRNVLR_					0	0	0		ENSG00000123213|ENST00000380985|NLN;NLN|p.L231Yfs*6|1|0.67|ENSG00000123213|chr5:65781290-65781291|-/A|frameshift_variant;NLN|p.E232Kfs*12|1|0.67|ENSG00000123213|chr5:65781293-65781293|G/-|frameshift_variant;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7568359375	2	442.774868	883.535184	0.21612	9.5693E-05	-0.11354	-5.0272E-05	0.10258	4.5421E-05	442.7745427597983	21.186	0.2458	21.257	21.106	21.352	0.071487					6	4	2	0	0	0	0.027866	1	570	570		19.36	0	1	15366			82266	3963	57315	57409	91332	91332					0.08875732948365567
VAGRSIFK	8	Unmodified	_VAGRSIFK_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2663879394531	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	0.87148	1	4079	4079		53.351	7.3995	1	3361200			82267	4254	57316	57410	91333	91333					0.07493812342568162
VAGTRHVK	8	Unmodified	_VAGTRHVK_					0	0	0			REV__ENSG00000164344|ENST00000264690|KLKB1	REV__ENSG00000164344|ENST00000264690|KLKB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7799072265625	2	434.261594	866.508634	-0.60835	-0.00026418	0.75592	0.00032827	0.14758	6.4087E-05	434.26182138563047	35.749	0.78989	35.749	35.306	36.096	0					38	20	2	0	0	0	0.027866	1	2810	2810		63.306	13.282	1	386990	+		82268	25743	57317	57411	91334	91334					0.07004044057032388
VAGTRHVK	8	Unmodified	_VAGTRHVK_					0	0	0			REV__ENSG00000164344|ENST00000264690|KLKB1	REV__ENSG00000164344|ENST00000264690|KLKB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.78009033203125	2	434.261594	866.508634	-0.90113	-0.00039133	1.0873	0.00047219	0.1862	8.086E-05	434.261988543362	35.591	1.0076	35.569	34.976	35.984	-0.021763					42	26	2	0	0	0	0.027866	1	2765	2765		63.306	19.189	1	342680	+		82269	25743	57317	57411	91335	91335					0.07004044057032388
VAGTRHVK	8	Unmodified	_VAGTRHVK_					0	0	0			REV__ENSG00000164344|ENST00000264690|KLKB1	REV__ENSG00000164344|ENST00000264690|KLKB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.2386169433594	2	434.261594	866.508634	-0.090274	-3.9203E-05	0.21114	9.1688E-05	0.12086	5.2485E-05	434.2615845980458	35.747	1.0181	35.791	35.12	36.139	0.04406					47	26	2	0	0	0	0.027866	1	2738	2738		60.972	23.813	1	343700	+		82270	25743	57317	57411	91336	91336					0.07004044057032388
VAGTRQED	8	Unmodified	_VAGTRQED_					0	0	0		ENST00000472011.5_1_1:235530775-235577785:+|nuORF	ENST00000472011.5_1_1:235530775-235577785:+|nuORF	ENST00000472011.5_1_1:235530775-235577785:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.24688720703125	2	438.214506	874.414459	-0.25717	-0.00011269	0.039039	1.7108E-05	-0.21813	-9.5587E-05	438.21438147670335	26.674	0.4942	26.651	26.324	26.818	-0.023088					21	11	3	0	0	0	0.027866	1	1394	1394		29.15	0	1	66824			82271	14979	57318	57412	91337	91337					-0.027771395557579126
VAGTVVAGLAV	11	Unmodified	_VAGTVVAGLAV_					0	0	0			REV__HLA-F|p.V314A|1|0.24|ENSG00000204642|chr6:29725501-29725501|T/C|missense_variant	REV__HLA-F|p.V314A|1|0.24|ENSG00000204642|chr6:29725501-29725501|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7925720214844	2	478.792392	955.570232	0.24332	0.0001165	-0.28219	-0.00013511	-0.03887	-1.8611E-05	478.79209530348226	50.971	0.79356	50.695	50.48	51.274	-0.27643					40	20	3	0	0	0	0.782	1	5197	5197		58.782	0	1	2022700	+		82272	36132	57319	57413	91338	91338					0.09066930965661868
VAGVRPSGA	9	Unmodified	_VAGVRPSGA_					0	0	0		ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.2454528808594	2	407.232502	812.450451	0.70886	0.00028867	-0.56289	-0.00022923	0.14597	5.9445E-05	407.23217341249835	31.949	0.79073	31.949	31.509	32.3	0					24	19	2	0	0	0	0.024541	1	2121	2121		8.2313	3.1444	1	158990			82273	16971	57320	57414	91339	91339					0.03672362411748509
VAGVRPSGA	9	Unmodified	_VAGVRPSGA_					0	0	0		ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	407.232502	812.450451	0.18469	7.521E-05	0.25443	0.00010361	0.43912	0.00017882	407.2324793222679	31.844	0.44069	31.856	31.663	32.104	0.011797	0.11451	0.00044931	NaN	3.9852	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160300			82274	16971	57320	57414							0.03672362411748509
VAGVRPSGA	9	Unmodified	_VAGVRPSGA_					0	0	0		ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	407.232502	812.450451	1.1113	0.00045257	-0.57789	-0.00023533	0.53345	0.00021724	407.2320747732655	31.569	0.52251	31.638	31.445	31.967	0.06896	-0.10373	-0.00022859	NaN	3.9852	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159060			82275	16971	57320	57414							0.03672362411748509
VAGVRPSGA	9	Unmodified	_VAGVRPSGA_					0	0	0		ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	ENST00000567890.1_1_12:52449947-52450525:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	407.232502	812.450451	0.43531	0.00017727	-1.706	-0.00069474	-1.2707	-0.00051747	407.23167533847544	31.708	0.32136	31.523	31.283	31.604	-0.18503	-0.21847	-0.0011474	NaN	3.9852	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49177			82276	16971	57320	57414							0.03672362411748509
VAGWGLCGL	9	Unmodified	_VAGWGLCGL_					0	0	0			REV__ENST00000441403.1_1_21:34914462-34914645:-|nuORF	REV__ENST00000441403.1_1_21:34914462-34914645:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	438.2461853027344	2	438.225831	874.437109	-0.36817	-0.00016134	-2.3375	-0.0010244	-2.7057	-0.0011857	438.2246502064393	29.097	1.7872	29.1	28.249	30.036	0.0031357					85	43	3	0	0	0	0.024389	1	1629	1629		29.842	1.5873	1	243600	+		82277	32544	57321	57415	91340	91340					-0.005132116918389329
VAHAVSVSQPS	11	Unmodified	_VAHAVSVSQPS_					0	0	0		ENST00000283415.3_1_5:1477575-1481080:-|nuORF	ENST00000283415.3_1_5:1477575-1481080:-|nuORF	ENST00000283415.3_1_5:1477575-1481080:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.2860107421875	2	541.285463	1080.55637	-0.016107	-8.7182E-06	-0.44786	-0.00024242	-0.46397	-0.00025114	541.2851537360907	22.466	1.1169	22.277	21.816	22.933	-0.18894					54	23	4	0	0	0	0.25893	1	794	794		93.143	5.4468	1	1044700			82278	11737	57322	57416	91341	91341					0.019316534665676954
VAHISTWLY	9	Unmodified	_VAHISTWLY_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2906494140625	2	545.290017	1088.56548	-0.19177	-0.00010457	3.094	0.0016871	2.9022	0.0015826	545.2917217426224	46.182	0.8401	46.086	45.632	46.473	-0.096653					60	22	4	0	0	0	0.64155	1	4460	4460		50.025	2.1089	1	2200100			82279	6301	57323	57417	91342	91342					0.024740468228856116
VAHKLQEKFA	10	Unmodified	_VAHKLQEKFA_					0	0	0			REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	REV__nc|ENSG00000156042|Q5T0N1-2|CFAP70	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	585.8115234375	2	585.835123	1169.65569	-1.8652	-0.0010927	-0.29658	-0.00017375	-2.1617	-0.0012664	586.3348898973657	27.784	0.15153	27.784	27.653	27.804	0					5	3	2	0	0	0	0.03519	1	1549	1549		49.442	1.7842	1	15487	+		82280	36805	57324	57418	91343	91343					0.07765096151319995
VAHSIIFEV	9	Unmodified	_VAHSIIFEV_					0	0	0		nc|ENSG00000197548|O95352-2|ATG7;ENST00000478638.5_1_3:11372879-11389427:+|nuORF;nc|ENSG00000197548|O95352-3|ATG7;ENSG00000197548|ENST00000693202|ATG7	nc|ENSG00000197548|O95352-2|ATG7	nc|ENSG00000197548|O95352-2|ATG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.78411865234375	2	507.784567	1013.55458	-0.26227	-0.00013318	0.077881	3.9547E-05	-0.18439	-9.3628E-05	507.7845669341197	72.678	1.2236	72.678	72.292	73.516	0					71	30	4	0	0	0	0.40179	1	8884	8884		65.803	0	1	5150800			82281	18637	57325	57419	91344	91344					0.04834644448612835
VAHSIIFEV	9	Unmodified	_VAHSIIFEV_					0	0	0		nc|ENSG00000197548|O95352-2|ATG7;ENST00000478638.5_1_3:11372879-11389427:+|nuORF;nc|ENSG00000197548|O95352-3|ATG7;ENSG00000197548|ENST00000693202|ATG7	nc|ENSG00000197548|O95352-2|ATG7	nc|ENSG00000197548|O95352-2|ATG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.78436279296875	2	507.784567	1013.55458	0.23321	0.00011842	-0.47251	-0.00023994	-0.23931	-0.00012152	507.78429752818664	73.015	1.1431	72.734	72.385	73.528	-0.28124					68	28	4	0	0	0	0.40179	1	8896	8896		65.803	0	1	5691900			82282	18637	57325	57419	91345	91345					0.04834644448612835
VAHSIIFEV	9	Unmodified	_VAHSIIFEV_					0	0	0		nc|ENSG00000197548|O95352-2|ATG7;ENST00000478638.5_1_3:11372879-11389427:+|nuORF;nc|ENSG00000197548|O95352-3|ATG7;ENSG00000197548|ENST00000693202|ATG7	nc|ENSG00000197548|O95352-2|ATG7	nc|ENSG00000197548|O95352-2|ATG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.784912109375	2	507.784567	1013.55458	0.2616	0.00013284	-0.41506	-0.00021076	-0.15345	-7.7922E-05	507.78429261693026	72.74	1.1878	72.749	72.331	73.519	0.0096512					69	29	4	0	0	0	0.29104	1	8799	8799		76.847	0	1	4612600			82283	18637	57325	57419	91346	91346					0.04834644448612835
VAIFSSIGTG	10	Unmodified	_VAIFSSIGTG_					0	0	0			REV__ENST00000313182.6_1_15:65899662-65903458:-|nuORF	REV__ENST00000313182.6_1_15:65899662-65903458:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	475.3076477050781	2	476.260925	950.507297	0.22759	0.00010839	1.376	0.00065532	1.6036	0.00076371	476.26153762650455	42.986	1.0171	42.873	42.165	43.182	-0.11253					42	26	3	0	0	0	0.03519	1	3878	3878		29.15	11.785	1	554500	+		82284	30229	57326	57420	91347	91347					0.030063651776458755
VAIIMTGPSL	10	Unmodified	_VAIIMTGPSL_					0	0	0			REV__ENST00000531776.1_1_11:16812090-16812671:-|nuORF	REV__ENST00000531776.1_1_11:16812090-16812671:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2911376953125	2	501.288628	1000.5627	-0.38964	-0.00019532	3.5736	0.0017914	3.184	0.0015961	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.941	1	10587	10587		51.335	3.3759	1	8504000	+		82285	34562	57327	57421	91348	91348					0.06244455373735036
VAIIMTGPSL	10	Unmodified	_VAIIMTGPSL_					0	0	0			REV__ENST00000531776.1_1_11:16812090-16812671:-|nuORF	REV__ENST00000531776.1_1_11:16812090-16812671:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29071044921875	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.0271	1	10266	10266		42.396	8.2236	1	10074000	+		82286	34562	57327	57421	91349	91349					0.06244455373735036
VAIKEFNPLS	10	Unmodified	_VAIKEFNPLS_					0	0	0		nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.313720703125	2	559.316232	1116.61791	-0.36635	-0.0002049	-4.3612	-0.0024393	-4.7275	-0.0026442	559.3130576080923	104	1.1847	103.87	102.87	104.06	-0.12928					42	28	2	0	0	0	1.0271	1	12955	12955		42.396	1.618	1	106820			82287	4668	57328	57422	91350	91350					0.06426585165854704
VAIKEFNPLS	10	Unmodified	_VAIKEFNPLS_					0	0	0		nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	559.316232	1116.61791	0.15894	8.8897E-05	-5.3432	-0.0029885	-5.1842	-0.0028996	559.3121756234218	103.91	1.3852	103.78	102.9	104.29	-0.12561	-0.041588	-0.00067238	NaN	42.396	47	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122930			82288	4668	57328	57422							0.06426585165854704
VAILTATY	8	Unmodified	_VAILTATY_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;nc|ENSG00000154122|Q9HCJ1-2|ANKH;ENST00000503939.5_1_5:14741448-14751330:-|nuORF;ENST00000515517.1_1_5:14741839-14746068:-|nuORF;chr5:14745962-14751069|129|11.92|0.58|4.37|-|0|ANKH,ANKH|1	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.24609375	2	426.247286	850.48002	0.80944	0.00034502	-3.6413	-0.0015521	-2.8319	-0.0012071	426.24565256969305	87.001	2.2437	86.859	86.147	88.391	-0.14217					135	53	5	0	0	0	1.0572	1	10593	10593		28.254	0	1	12732000			82289	6383	57329	57423	91351	91351					0.048798816372254805
VAILYRVDI	9	Unmodified	_VAILYRVDI_					0	0	0			REV__nc|ENSG00000168803|Q6DHV7-2|ADAL	REV__nc|ENSG00000168803|Q6DHV7-2|ADAL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3195190429688	2	531.321317	1060.62808	-0.77263	-0.00041051	-3.6858	-0.0019584	-4.4585	-0.0023689	531.3194526567283	93.654	1.3564	93.649	93.2	94.557	-0.0041962					98	32	4	0	0	0	0.85329	1	11860	11860		35.618	1.4457	1	4020300	+		82290	26294	57330	57424	91352	91352					0.10019192891104467
VAIMREEE	8	Oxidation (M)	_VAIM(Oxidation (M))REEE_		VAIM(1)REEE		VAIM(89)REEE	0	0	1			REV__ENSG00000214029|ENST00000537226|ZNF891	REV__ENSG00000214029|ENST00000537226|ZNF891	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.7371520996094	2	496.739499	991.464446	-1.2569	-0.00062433	-2.7791	-0.0013805	-4.0359	-0.0020048	496.73780868644724	33.587	1.2358	33.421	32.476	33.711	-0.16565					57	30	4	0	0	0	0.46709	1	2383	2383		88.643	8.9303	1	2227100	+		82291	28766	57331	57425	91353	91353		852			-0.031627729421074946
VAINRPLVK	9	Unmodified	_VAINRPLVK_					0	0	0			REV__IDO1|p.R100H|1|0.16|ENSG00000131203|chr8:39918203-39918203|G/A|missense_variant	REV__IDO1|p.R100H|1|0.16|ENSG00000131203|chr8:39918203-39918203|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2657165527344	2	505.329476	1008.6444	0.55347	0.00027968	-1.0433	-0.00052722	-0.48985	-0.00024754	505.32886303641095	62.856	0.48684	62.91	62.64	63.126	0.054104					17	11	2	0	0	0	0.024381	1	7225	7225		45.952	0	1	328510	+		82292	23195	57332	57426	91354	91354					0.14042318847839397
VAITGPQIA	9	Unmodified	_VAITGPQIA_					0	0	0			REV__ENST00000323116.9_2_3:182584147-182584201:+|nuORF	REV__ENST00000323116.9_2_3:182584147-182584201:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.77978515625	2	435.258185	868.501818	-0.095669	-4.1641E-05	0.92584	0.00040298	0.83017	0.00036134	435.2585128690719	35.445	1.8985	35.489	34.551	36.45	0.044056					68	50	2	0	0	0	0.023817	1	2777	2777		60.972	7.6205	1	279120	+		82293	30369	57333	57427	91355	91355					0.06230686385811168
VAKKIQHK	8	Unmodified	_VAKKIQHK_					0	0	0			REV__ENST00000498752.1_1_11:43740306-43740693:+|nuORF	REV__ENST00000498752.1_1_11:43740306-43740693:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	475.7509765625	2	476.308544	950.602535	0.33553	0.00015982	-0.40396	-0.00019241	-0.068423	-3.259E-05	476.3082928343905	32.693	0.96531	32.501	31.814	32.779	-0.19261					31	22	2	0	0	0	0.027866	1	2172	2172		33.516	8.0654	1	166360	+		82294	33890	57334	57428	91356	91356					0.12525763159317194
VAKKLGEMW	9	Unmodified	_VAKKLGEMW_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant;ENSG00000029993|ENST00000325307|HMGB3	nc|ENSG00000124097|B2RPK0|HMGB1P1;HMGB3|p.V180Gfs*6|1|0.73|ENSG00000029993|chrX:150987842-150987843|-/A|frameshift_variant	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2947387695312	2	531.294245	1060.57394	-0.81549	-0.00043327	0.52043	0.0002765	-0.29506	-0.00015676	531.2943695160645	43.197	0.74022	42.96	42.679	43.419	-0.23737					50	19	4	0	0	0	0.26966	1	3924	3924		79.713	10.085	1	2319200			82295	9808;1008	57335	57429	91357	91357					0.046072774678577844
VAKKPTNKA	9	Unmodified	_VAKKPTNKA_					0	0	0		ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	ENSG00000101017|ENST00000372285|CD40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.75274658203125	2	478.798009	955.581465	0.06152	2.9456E-05	-2.9523	-0.0014136	-2.8908	-0.0013841	478.79622589468255	32.551	0.11192	32.551	32.494	32.606	0					4	2	2	0	0	0	0.024523	1	2267	2267		29.15	0	1	219720			82296	2276	57336	57430	91358	91358					0.10189753059796658
VAKLKKSI	8	Unmodified	_VAKLKKSI_					0	0	0		ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2686767578125	2	443.807845	885.601138	-0.48724	-0.00021624	0.83325	0.0003698	0.346	0.00015356	443.8080191501898	28.991	0.519	28.82	28.595	29.114	-0.17173					22	11	3	0	0	0	0.027866	1	1703	1703		24.203	0	1	70374			82297	8738	57337	57431	91359	91359					0.15376129070546085
VAKLKKSI	8	Unmodified	_VAKLKKSI_					0	0	0		ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.807845	885.601138	-1.3176	-0.00058476	1.3573	0.00060238	0.039691	1.7615E-05	443.80852952032774	29.134	0.60835	28.888	28.621	29.229	-0.24524	0.013007	0.00064918	NaN	24.203	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64779			82298	8738	57337	57431							0.15376129070546085
VAKLKKSI	8	Unmodified	_VAKLKKSI_					0	0	0		ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	ENSG00000177453|ENST00000326035|NIM1K	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.807845	885.601138	-0.099201	-4.4026E-05	0.12774	5.6694E-05	0.028543	1.2668E-05	443.80775923971845	29.068	0.51326	28.918	28.7	29.213	-0.14952	0.042755	-0.00044219	NaN	24.203	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109240			82299	8738	57337	57431							0.15376129070546085
VAKLNGLLE	9	Unmodified	_VAKLNGLLE_					0	0	0			REV__ENSG00000125124|ENST00000245157|BBS2	REV__ENSG00000125124|ENST00000245157|BBS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7923583984375	2	478.792392	955.570232	-0.3205	-0.00015346	0.06876	3.2922E-05	-0.25174	-0.00012053	478.79221035259803	50.588	0.51813	50.669	50.477	50.995	0.080994					46	14	4	0	0	0	0.55828	1	5249	5249		55.504	0.72789	1	6525700	+		82300	22800	57338	57432	91360	91360					0.09066930965673237
VAKPSQVYF	9	Unmodified	_VAKPSQVYF_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.7840576171875	2	519.784567	1037.55458	-1.0134	-0.00052673	0.57802	0.00030044	-0.43534	-0.00022628	519.7846581758762	48.489	0.84442	48.392	48.114	48.958	-0.097553					63	22	4	0	0	0	0.40693	2	4830	4819;4830		65.465	6.9922	1	3659200			82301	371	57339	57433	91361;91362	91362					0.037306444486148393
VAKPSQVYF	9	Unmodified	_VAKPSQVYF_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.7843627929688	2	519.784567	1037.55458	-0.59279	-0.00030813	-0.02368	-1.2308E-05	-0.61647	-0.00032043	519.7843991214319	48.832	0.83168	48.552	48.218	49.049	-0.27977					60	22	4	0	0	0	0.30449	1	4872	4872		75.043	6.2565	1	4017100			82302	371	57339	57433	91363	91363					0.037306444486148393
VAKPSQVYF	9	Unmodified	_VAKPSQVYF_					0	0	0		nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229|ITGA6;chr2:172471105-172472774|467|12.93|0.51|4.65|+|ENST00000442250|ITGA6,ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;chr2:172472890-172474055|470|18.7|0.94|4.32|+|ENST00000458358|ITGA6,ITGA6;chr2:172469380-172472774|448|10.26|0.45|4.5|+|ENST00000458358|ITGA6,ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229-4|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6;ENST00000469534.1_1_2:173352734-173354395:+|nuORF	nc|ENSG00000091409|P23229-3|ITGA6	nc|ENSG00000091409|P23229-3|ITGA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.784912109375	2	519.784567	1037.55458	-0.078406	-4.0754E-05	-0.46992	-0.00024426	-0.54833	-0.00028501	519.7841337722485	48.647	0.98874	48.464	48.126	49.115	-0.18206					66	26	4	0	0	0	0.40693	1	4841	4841		65.465	6.6834	1	3658300			82303	371	57339	57433	91364	91364					0.037306444486148393
VAKRGLKTAQQ	11	Unmodified	_VAKRGLKTAQQ_					0	0	0			REV__ENST00000448775.3_1_11:122953804-122954459:-|nuORF	REV__ENST00000448775.3_1_11:122953804-122954459:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.5806884765625	3	400.578811	1198.7146	0.70335	0.00028175	3.5435	0.0014195	4.2469	0.0017012	400.5801374909674	110.7	0.47864	110.58	110.51	110.99	-0.12525					42	17	3	0	0	0	1.09	1	13624	13624		14.086	1.1285	1	1160800	+		82304	32660	57340	57434	91365	91365					0.12319572445653648
VAKSTTSAW	9	Unmodified	_VAKSTTSAW_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	475.75091552734375	2	475.750724	949.486896	0.36114	0.00017181	-0.3374	-0.00016052	0.023735	1.1292E-05	475.75041674307295	31.955	1.1609	31.718	31.336	32.497	-0.23667					44	27	3	0	0	0	0.32811	1	2179	2179		71.877	18.526	1	1780900			82305	7732	57341	57435	91366	91366					0.010131945178045498
VAKSTTSAW	9	Unmodified	_VAKSTTSAW_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	475.750732421875	2	475.750724	949.486896	0.087077	4.1427E-05	-0.019222	-9.1449E-06	0.067854	3.2282E-05	475.75054782568486	31.895	0.8963	31.71	31.36	32.257	-0.18503					45	20	4	0	0	0	0.54416	1	2159	2159		56.434	12.057	1	1754900			82306	7732	57341	57435	91367	91367					0.010131945178045498
VAKSTTSAW	9	Unmodified	_VAKSTTSAW_					0	0	0		nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	nc|ENSG00000167741|Q6P531-2|GGT6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.7508239746094	2	475.750724	949.486896	-0.41322	-0.00019659	0.43277	0.00020589	0.019553	9.3021E-06	475.7508274504726	31.883	0.98438	31.726	31.3	32.284	-0.15772					47	23	3	0	0	0	0.30449	2	2153	2147;2153		75.043	19.836	1	1918700			82307	7732	57341	57435	91368;91369	91369					0.010131945178045498
VAKVGQYTF	9	Unmodified	_VAKVGQYTF_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.7769775390625	2	506.776742	1011.53893	0.78492	0.00039778	-1.092	-0.00055341	-0.30709	-0.00015563	506.77612866393645	51.105	1.2693	50.994	50.712	51.981	-0.11163					81	33	4	0	0	0	0.013924	4	5236	5219;5236;5248;5261		167.23	87.516	1	10349000			82308	8506	57342	57436	91370;91371;91372;91373	91371					0.03362357931553106
VAKVGQYTF	9	Unmodified	_VAKVGQYTF_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.7765197753906	2	506.776742	1011.53893	-0.51287	-0.00025991	0.096676	4.8993E-05	-0.41619	-0.00021092	506.77674913497606	51.376	1.3393	51.1	50.778	52.117	-0.27643					92	35	5	0	0	0	0.01388	3	5259	5259;5271;5283		195.06	101.87	1	10236000			82309	8506	57342	57436	91374;91375;91376	91374					0.03362357931553106
VAKVGQYTF	9	Unmodified	_VAKVGQYTF_					0	0	0		ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	ENST00000593233.1_1_19:5894755-5901370:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.7771301269531	2	506.776742	1011.53893	0.71612	0.00036292	-1.1152	-0.00056518	-0.39912	-0.00020226	506.77611209306957	51.15	1.2824	50.969	50.647	51.93	-0.18071					87	33	5	0	0	0	0.013924	3	5241	5226;5241;5253		209.84	107.07	1	10006000			82310	8506	57342	57436	91377;91378;91379	91378					0.03362357931553106
VAKVSHVQ	8	Unmodified	_VAKVSHVQ_					0	0	0		ENST00000441966.1_1_6:29297957-29298365:-|nuORF	ENST00000441966.1_1_6:29297957-29298365:-|nuORF	ENST00000441966.1_1_6:29297957-29298365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.7799072265625	2	434.255977	866.497401	-0.59755	-0.00025949	1.7646	0.00076629	1.1671	0.0005068	434.2563532522682	36.34	0.68827	36.34	35.96	36.648	0					32	19	2	0	0	0	0.027866	1	2810	2810		47.916	0	1	495090			82311	14371	57343	57437	91380	91380					0.05881221962908967
VALAGALALT	10	Unmodified	_VALAGALALT_					0	0	0			REV__ENSG00000125731|ENST00000245908|SH2D3A	REV__ENSG00000125731|ENST00000245908|SH2D3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.25311279296875	2	450.28166	898.548768	-0.44808	-0.00020176	0.77964	0.00035106	0.33156	0.0001493	450.2818331707007	64.673	0.87594	64.673	64.384	65.26	0					58	23	4	0	0	0	0.03519	1	7608	7608		65.803	0	1	1967700	+		82312	22836	57344	57438	91381	91381					0.09543545936935516
VALASGKEHS	10	Unmodified	_VALASGKEHS_					0	0	0		ENST00000433976.6_1_16:89287482-89288574:+|nuORF	ENST00000433976.6_1_16:89287482-89288574:+|nuORF	ENST00000433976.6_1_16:89287482-89288574:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.7886047363281	2	499.766906	997.519259	0.074959	3.7462E-05	-0.78097	-0.0003903	-0.70601	-0.00035284	499.76368013215557	21.164	0.87324	21.236	20.811	21.684	0.071487					28	17	3	0	0	0	0.03519	1	611	611		47.657	25.078	1	17725			82313	14237	57345	57439	91382	91382					0.02039981920813716
VALDKRTPLPR	11	Unmodified	_VALDKRTPLPR_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31127242-31129800:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	422.59234619140625	3	422.594461	1264.76155	-0.52617	-0.00022236	-3.6431	-0.0015396	-4.1693	-0.0017619	422.59283820863124	49.877	2.9861	49.877	49.249	52.236	0					311	84	6	0	0	0	1.0408	1	5235	5235		27.644	2.5179	1	14959000			82314	4311	57346	57440	91383	91383					0.13976431996798055
VALFNLIDT	9	Unmodified	_VALFNLIDT_					0	0	0		nc|ENSG00000101955|P78539-3|SRPX;ENSG00000101955|ENST00000378533|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENST00000461865.1_1_X:38008966-38013244:-|nuORF;nc|ENSG00000101955|P78539-2|SRPX	nc|ENSG00000101955|P78539-3|SRPX	nc|ENSG00000101955|P78539-3|SRPX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.2814636230469	2	503.2844	1004.55425	-0.62177	-0.00031293	1.2448	0.00062651	0.62306	0.00031358	503.7868907456015	94.3	1.1051	94.162	93.659	94.765	-0.13779					39	25	2	0	0	0	0.024457	1	11543	11543		37.159	16.212	1	168740			82315	2364	57347	57441	91384	91384					0.0521522472874949
VALFNLIDT	9	Unmodified	_VALFNLIDT_					0	0	0		nc|ENSG00000101955|P78539-3|SRPX;ENSG00000101955|ENST00000378533|SRPX;nc|ENSG00000101955|P78539-5|SRPX;ENST00000461865.1_1_X:38008966-38013244:-|nuORF;nc|ENSG00000101955|P78539-2|SRPX	nc|ENSG00000101955|P78539-3|SRPX	nc|ENSG00000101955|P78539-3|SRPX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.2844	1004.55425	0.30299	0.00015249	1.9769	0.00099496	2.2799	0.0011475	503.7868309195096	94.489	0.62624	94.367	94.058	94.685	-0.12215	0.10241	0.00049447	NaN	37.159	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204570			82316	2364	57347	57441							0.0521522472874949
VALGAVVTGAV	11	Unmodified	_VALGAVVTGAV_					0	0	0		HLA-F|p.V314A|1|0.24|ENSG00000204642|chr6:29725501-29725501|T/C|missense_variant	HLA-F|p.V314A|1|0.24|ENSG00000204642|chr6:29725501-29725501|T/C|missense_variant	HLA-F|p.V314A|1|0.24|ENSG00000204642|chr6:29725501-29725501|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.79193115234375	2	478.792392	955.570232	-0.3205	-0.00015346	0.06876	3.2922E-05	-0.25174	-0.00012053	478.79221035259803	50.588	0.51813	50.669	50.477	50.995	0.080994					46	14	4	0	0	0	0.95891	1	5261	5261		45.952	1.8352	1	6525700			82317	17740	57348	57442	91385	91385					0.09066930965673237
VALGRGTVA	9	Unmodified	_VALGRGTVA_					0	0	0			REV__ENST00000548191.1_2_12:110511353-110511446:-|nuORF	REV__ENST00000548191.1_2_12:110511353-110511446:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.2560729980469	2	422.255977	842.497401	-0.12014	-5.0728E-05	-0.21418	-9.0438E-05	-0.33431	-0.00014117	422.2558311791269	21.924	0.67052	21.733	21.324	21.994	-0.19072					31	13	4	0	0	0	0.36105	1	711	711		68.485	8.1907	1	640430	+		82318	34873	57349	57443	91386	91386					0.06985221962906962
VALGVALVLS	10	Unmodified	_VALGVALVLS_					0	0	0		nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4	nc|ENSG00000204385|Q53GD3-4|SLC44A4	nc|ENSG00000204385|Q53GD3-4|SLC44A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.3040466308594	2	471.305136	940.595718	1.2343	0.00058173	-4.0277	-0.0018983	-2.7934	-0.0013165	471.3030939289187	17.933	0.69178	17.779	17.607	18.299	-0.15403					22	13	4	0	0	0	1.1237	1	252	252		23.042	1.0826	1	194490			82319	10338	57350	57444	91387	91387					0.12304405488077919
VALGVVIFN	9	Unmodified	_VALGVVIFN_					0	0	0			REV__nc|ENSG00000157426|Q4L235-4|AASDH	REV__nc|ENSG00000157426|Q4L235-4|AASDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.28369140625	2	466.284203	930.553853	-0.46139	-0.00021514	0.63902	0.00029797	0.17764	8.2828E-05	466.2843406329675	102.26	0.65611	102.26	102.04	102.69	0					34	14	3	0	0	0	0.64155	1	13119	13119		50.025	5.4935	1	314130	+		82320	36813	57351	57445	91388	91388					0.08579849799559724
VALIIKPD	8	Unmodified	_VALIIKPD_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000038382|O75962-4|TRIO	nc|ENSG00000038382|O75962-4|TRIO	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7800598144531	2	434.778754	867.542954	0.15534	6.7538E-05	3.0454	0.0013241	3.2007	0.0013916	434.77996518621967	36.241	1.8835	36.025	35.43	37.314	-0.21661					124	49	3	0	0	0	0.95417	2	2800	2800;2813		44.531	2.0566	1	8069600			82321	1053;6785	57352	57446	91389;91390	91389					0.10388447425282266
VALLAVLDP	9	Unmodified	_VALLAVLDP_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7710876464844	2	455.784036	909.553519	-0.013576	-6.1879E-06	-2.6122	-0.0011906	-2.6258	-0.0011968	455.7826424442197	73.226	0.22096	73.235	73.181	73.402	0.0096512					9	5	2	0	0	0	0.024497	1	8883	8883		20.482	0	1	124440	+		82322	28639	57353	57447	91391	91391					0.09512430079701062
VALLIGRCSFV	11	Unmodified	_VALLIGRCSFV_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3431396484375	2	589.341726	1176.6689	-1.6043	-0.00094547	3.4637	0.0020413	1.8594	0.0010958	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.018	1	11840	11840		32.812	3.6424	1	12648000	+		82323	25650	57354	57448	91392	91392					0.08763210939059718
VALLIGRCSFV	11	Unmodified	_VALLIGRCSFV_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3429565429688	2	589.341726	1176.6689	-1.3447	-0.00079247	3.1761	0.0018718	1.8315	0.0010794	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0238	1	11830	11830		31.53	3.4483	1	13724000	+		82324	25650	57354	57448	91393	91393					0.08763210939059718
VALLIGRCSFV	11	Unmodified	_VALLIGRCSFV_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3424682617188	2	589.341726	1176.6689	-1.9349	-0.0011403	3.84	0.002263	1.9051	0.0011227	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0238	2	11342	11342;11377		31.53	3.596	1	15816000	+		82325	25650	57354	57448	91394;91395	91394					0.08763210939059718
VALLIGRCSFV	11	Unmodified	_VALLIGRCSFV_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3429565429688	2	589.341726	1176.6689	-1.3212	-0.00077864	3.3274	0.001961	2.0062	0.0011823	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	0.82076	3	10985	10985;11009;11236		56.434	24.904	1	5175100	+		82326	25650	57354	57448	91396;91397;91398	91396					0.08763210939059718
VALLIGRCSFV	11	Unmodified	_VALLIGRCSFV_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343505859375	2	589.341726	1176.6689	-0.33817	-0.0001993	2.1962	0.0012943	1.858	0.001095	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0238	2	11137	11125;11137		31.53	3.4483	1	6196800	+		82327	25650	57354	57448	91399;91400	91400					0.08763210939059718
VALLLPGAP	9	Unmodified	_VALLLPGAP_					0	0	0		nc|ENSG00000167992|Q96DN2-2|VWCE;ENSG00000167992|ENST00000335613|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.7746887207031	2	425.773471	849.53239	-0.086541	-3.6847E-05	3.0095	0.0012814	2.923	0.0012445	425.7747981740325	42.002	1.1717	42.002	41.579	42.75	0					125	33	6	0	0	0	0.99355	1	3880	3880		21.702	0	1	65572000			82328	7765	57355	57449	91401	91401					0.10160464770854105
VALLLPGAP	9	Unmodified	_VALLLPGAP_					0	0	0		nc|ENSG00000167992|Q96DN2-2|VWCE;ENSG00000167992|ENST00000335613|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.7748718261719	2	425.773471	849.53239	-0.25623	-0.0001091	3.2704	0.0013925	3.0142	0.0012834	425.7748978545771	42.198	1.1395	42.066	41.641	42.78	-0.13219					115	32	6	0	0	0	0.99355	2	3813	3813;3835		21.702	0	1	68817000			82329	7765	57355	57449	91402;91403	91402					0.10160464770854105
VALLLPGAP	9	Unmodified	_VALLLPGAP_					0	0	0		nc|ENSG00000167992|Q96DN2-2|VWCE;ENSG00000167992|ENST00000335613|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	425.77490234375	2	425.773471	849.53239	0.19274	8.2063E-05	2.6344	0.0011217	2.8272	0.0012037	425.7746312811681	42.075	1.1896	42.101	41.636	42.825	0.026012					124	33	6	0	0	0	0.99355	1	3778	3778		21.702	0	1	66524000			82330	7765	57355	57449	91404	91404					0.10160464770854105
VALLLPGAP	9	Unmodified	_VALLLPGAP_					0	0	0		nc|ENSG00000167992|Q96DN2-2|VWCE;ENSG00000167992|ENST00000335613|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7748718261719	2	425.773471	849.53239	-0.20506	-8.731E-05	3.2791	0.0013961	3.074	0.0013088	425.77482073258034	42.256	0.99166	42.024	41.733	42.725	-0.23186					102	26	5	0	0	0	0.93795	2	3783	3783;3795		29.842	0	1	38059000			82331	7765	57355	57449	91405;91406	91405					0.10160464770854105
VALLLPGAP	9	Unmodified	_VALLLPGAP_					0	0	0		nc|ENSG00000167992|Q96DN2-2|VWCE;ENSG00000167992|ENST00000335613|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	nc|ENSG00000167992|Q96DN2-2|VWCE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.77496337890625	2	425.773471	849.53239	0.11223	4.7786E-05	2.9026	0.0012358	3.0148	0.0012836	425.7746512667468	42.244	1.0604	42.013	41.688	42.749	-0.2303					107	28	5	0	0	0	0.99355	1	3815	3815		21.702	0	1	35838000			82332	7765	57355	57449	91407	91407					0.10160464770854105
VALLPLRG	8	Unmodified	_VALLPLRG_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	419.2509460449219	2	419.779088	837.543623	-0.15805	-6.6346E-05	3.1252	0.0013119	2.9671	0.0012455	419.779496330006	25.832	0.26537	25.661	25.542	25.807	-0.17078					10	6	2	0	0	0	0.027866	1	1251	1251		29.842	15.177	1	33208	+		82333	27175	57356	57450	91408	91408					0.11835286864993577
VALLVPTGL	9	Unmodified	_VALLVPTGL_					0	0	0		ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7879333496094	2	441.786579	881.558604	0.19884	8.7846E-05	2.7852	0.0012305	2.9841	0.0013183	441.78771995741124	42.661	0.83592	42.661	41.987	42.823	0					57	23	5	0	0	0	0.60698	1	3928	3928		52.299	0	1	11253000			82334	16400	57357	57451	91409	91409					0.11308733942325944
VALLVPTGL	9	Unmodified	_VALLVPTGL_					0	0	0		ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.787841796875	2	441.786579	881.558604	0.23631	0.0001044	2.723	0.001203	2.9593	0.0013074	441.7876811390936	42.861	0.74303	42.722	42.142	42.885	-0.13929					56	20	5	0	0	0	0.75282	1	3941	3941		42.474	0	1	12196000			82335	16400	57357	57451	91410	91410					0.11308733942325944
VALNTLCVAI	10	Unmodified	_VALNTLCVAI_					0	0	0		CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	CACNA1A|p.T1355Pfs*16|1|0.22|ENSG00000141837|chr19:13262760-13262760|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2945556640625	2	508.794078	1015.5736	-0.13577	-6.9077E-05	3.8546	0.0019612	3.7188	0.0018921	508.7959594604195	102.56	0.61121	102.43	102.1	102.72	-0.12666					27	13	3	0	0	0	1.1286	1	12747	12747		25.574	1.3713	1	244640			82336	202	57358	57452	91411	91411					0.06643857748008486
VALQPPLL	8	Unmodified	_VALQPPLL_					0	0	0		ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	425.77471923828125	2	425.773471	849.53239	-0.25623	-0.0001091	3.2704	0.0013925	3.0142	0.0012834	425.7748978545771	42.198	1.1395	42.066	41.641	42.78	-0.13219					115	32	6	0	0	0	1.0574	1	3847	3847		15.636	0	1	68817000			82337	10439	57359	57453	91412	91412					0.10160464770854105
VALRFLPL	8	Unmodified	_VALRFLPL_					0	0	0		ENST00000239944.6_1_3:150264054-150264312:-|nuORF	ENST00000239944.6_1_3:150264054-150264312:-|nuORF	ENST00000239944.6_1_3:150264054-150264312:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.287841796875	2	464.802563	927.590573	0.0032533	1.5121E-06	0.2602	0.00012094	0.26345	0.00012245	464.8026350208158	76.255	0.77338	76.003	75.754	76.528	-0.25162					27	18	2	0	0	0	0.027866	1	9063	9063		28.254	0	1	157820			82338	11278	57360	57454	91413	91413					0.1238814641612862
VALSPRLEC	9	Unmodified	_VALSPRLEC_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3063049316406	2	494.268227	986.521901	-0.91347	-0.0004515	-2.2965	-0.0011351	-3.2099	-0.0015866	494.266878884837	55.522	1.1191	55.62	54.982	56.102	0.098015					56	30	3	0	0	0	0.024436	1	6133	6133		16.473	0	1	545610			82339	16039	57361	57455	91414	91414					0.028101140541139102
VALSPVGPI	9	Unmodified	_VALSPVGPI_					0	0	0			REV__ENSG00000169548|ENST00000302097|ZNF280A	REV__ENSG00000169548|ENST00000302097|ZNF280A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.3027038574219	2	426.763104	851.511654	0.098336	4.1966E-05	3.2692	0.0013952	3.3675	0.0014371	426.7644498545757	66.279	0.66277	66.037	65.748	66.41	-0.24145					34	16	3	0	0	0	0.024354	1	7643	7643		23.042	5.6775	1	865340	+		82340	26376	57362	57456	91415	91415					0.07995874391190227
VALSVILFNTT	11	Unmodified	_VALSVILFNTT_					0	0	0			REV__DRD2|p.Y71F|1|0.32|ENSG00000149295|chr11:113424440-113424440|T/A|missense_variant	REV__DRD2|p.Y71F|1|0.32|ENSG00000149295|chr11:113424440-113424440|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3436279296875	2	589.344989	1176.67542	-0.70201	-0.00041373	-2.2615	-0.0013328	-2.9635	-0.0017466	589.3434995059089	95.339	0.8998	95.342	95.045	95.944	0.0033722					53	20	4	0	0	0	1.0344	1	12109	12109		29.17	0.020503	1	728860	+		82341	19708	57363	57457	91416	91416					0.09415427371436635
VALSVILFNTT	11	Unmodified	_VALSVILFNTT_					0	0	0			REV__DRD2|p.Y71F|1|0.32|ENSG00000149295|chr11:113424440-113424440|T/A|missense_variant	REV__DRD2|p.Y71F|1|0.32|ENSG00000149295|chr11:113424440-113424440|T/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3431396484375	2	589.344989	1176.67542	-1.3212	-0.00077864	-2.2086	-0.0013016	-3.5297	-0.0020802	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	1.0465	1	11176	11176		26.063	1.5442	1	5175100	+		82342	19708	57363	57457	91417	91417					0.09415427371436635
VALVFATY	8	Unmodified	_VALVFATY_					0	0	0		ENST00000437413.2_1_16:21498935-21531497:-|nuORF;nc|ENSG00000260727|Q8MH63|SLC7A5P1;nc|ENSG00000258186|Q9GIP4-1|SLC7A5P2;nc|ENSG00000258186|Q9GIP4|SLC7A5P2;ENST00000522841.6_1_16:21495824-21531728:-|nuORF;SLC7A5|p.L213Pfs*11|1|0.38|ENSG00000103257|chr16:87851752-87851753|-/A|frameshift_variant;ENSG00000103257|ENST00000261622|SLC7A5	ENST00000437413.2_1_16:21498935-21531497:-|nuORF	ENST00000437413.2_1_16:21498935-21531497:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	441.76123046875	2	442.249829	882.485105	-0.28151	-0.0001245	0.017892	7.9125E-06	-0.26361	-0.00011658	442.25058121585187	38.853	0.28909	38.754	38.591	38.88	-0.098755					12	7	2	0	0	0	0.027866	1	3268	3268		29.842	8.1392	1	137780			82343	2487	57364	57458	91418	91418					0.03916185499849689
VALVPRLN	8	Unmodified	_VALVPRLN_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.2273864746094	2	441.281995	880.549437	-0.40594	-0.00017914	0.52149	0.00023012	0.11554	5.0988E-05	441.28192317446315	34.988	0.68051	34.988	34.59	35.27	0					22	17	2	0	0	0	0.027866	1	2646	2646		20.482	0	1	53690	+		82344	25098	57365	57459	91419	91419					0.10438385376653514
VALWPGLGL	9	Unmodified	_VALWPGLGL_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.2769470214844	2	463.278921	924.543289	-0.34559	-0.0001601	-3.7549	-0.0017396	-4.1005	-0.0018997	463.2769519548531	56.579	0.98576	56.579	56.241	57.227	0					81	27	6	0	0	0	0.32257	2	6319	6310;6319		72.62	3.8331	1	4698900	+		82345	24213	57366	57460	91420;91421	91421					0.0779986714513825
VALWPGLGL	9	Unmodified	_VALWPGLGL_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.2771301269531	2	463.278921	924.543289	-0.51815	-0.00024005	-3.8619	-0.0017892	-4.3801	-0.0020292	463.27701311614084	56.718	1.1161	56.553	56.201	57.318	-0.16431					75	30	4	0	0	0	0.32257	2	6316	6316;6329		72.62	3.527	1	5274300	+		82346	24213	57366	57460	91422;91423	91422					0.0779986714513825
VALWPGLGL	9	Unmodified	_VALWPGLGL_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	463.278921	924.543289	0.15038	6.9669E-05	-4.4149	-0.0020453	-4.2645	-0.0019757	463.2767385481598	56.431	1.1114	56.529	56.173	57.284	0.097893	-0.025065	-0.00033322	NaN	72.62	73	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4737600	+		82347	24213	57366	57460							0.0779986714513825
VALYDYQAA	9	Unmodified	_VALYDYQAA_					0	0	0		nc|ENSG00000085733|Q14247-2|CTTN;nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-2|CTTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.3083190917969	2	507.250557	1012.48656	0.42757	0.00021689	0.23575	0.00011958	0.66332	0.00033647	507.752662785005	83.765	0.4216	83.596	83.369	83.79	-0.16915					10	9	2	0	0	0	0.024487	1	10146	10146		24.203	0	1	43329			82348	18102	57367	57461	91424	91424					-0.0191822520206415
VAMGVICTAI	10	Unmodified	_VAMGVICTAI_					0	0	0		ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.26434326171875	2	489.261556	976.508559	3.3431	0.0016356	0.63519	0.00031078	3.9782	0.0019464	489.2617385935617	18.641	1.6967	18.704	18.222	19.918	0.063307					66	34	3	0	0	0	1.1166	1	251	251		30.504	2.2494	1	181340			82349	6659	57368	57462	91425	91425					0.019365399504977177
VAMMMVGSLL	10	3 Oxidation (M)	_VAM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))VGSLL_		VAM(1)M(1)M(1)VGSLL		VAM(56)M(56)M(56)VGSLL	0	0	3		nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;ENSG00000140015|ENST00000322893|KCNH5	nc|ENSG00000140015|Q8NCM2-2|KCNH5	nc|ENSG00000140015|Q8NCM2-2|KCNH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2620239257812	2	550.263439	1098.51232	-1.3532	-0.0007446	-1.8613	-0.0010242	-3.2145	-0.0017688	550.2622884144965	91.356	1.0903	91.356	91.011	92.101	0					64	25	3	0	0	0	0.87795	1	11585	11585		55.504	7.8469	1	4093800			82350	5386	57369	57463	91426	91426		225;226;227			-0.03299158337904373
VAMMMVGSLL	10	3 Oxidation (M)	_VAM(Oxidation (M))M(Oxidation (M))M(Oxidation (M))VGSLL_		VAM(1)M(1)M(1)VGSLL		VAM(61)M(61)M(61)VGSLL	0	0	3		nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;ENSG00000140015|ENST00000322893|KCNH5	nc|ENSG00000140015|Q8NCM2-2|KCNH5	nc|ENSG00000140015|Q8NCM2-2|KCNH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2618408203125	2	550.263439	1098.51232	-0.039855	-2.1931E-05	-3.2694	-0.0017991	-3.3093	-0.001821	550.2615259232589	91.344	1.0038	91.355	91.074	92.077	0.011276					60	23	3	0	0	0	0.79525	1	11507	11507		60.972	7.6205	1	3694700			82351	5386	57369	57463	91427	91427		225;226;227			-0.03299158337904373
VAMMVPDYAL	10	Unmodified	_VAMMVPDYAL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF;nc|ENSG00000158486|Q8TD57-3|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2719116210938	2	555.272121	1108.52969	-0.43337	-0.00024064	0.52119	0.0002894	0.08782	4.8764E-05	555.2721837114427	95.823	1.1105	95.666	95.269	96.379	-0.15646					60	25	4	0	0	0	1.0004	1	11840	11840		45.952	5.1738	1	1827300			82352	6676	57370	57464	91428	91428					-0.020234947406379433
VANGFITKSF	10	Unmodified	_VANGFITKSF_					0	0	0			REV__nc|ENSG00000173157|P59510|ADAMTS20	REV__nc|ENSG00000173157|P59510|ADAMTS20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2954711914062	2	542.295299	1082.57605	-0.40057	-0.00021723	0.62691	0.00033997	0.22634	0.00012274	542.2955453600698	18.409	0.88302	18.277	17.86	18.743	-0.13147					43	17	3	0	0	0	1.0992	1	310	310		32.812	3.6629	1	666370	+		82353	26745	57371	57465	91429	91429					0.038060294773458736
VANLRGESL	9	Unmodified	_VANLRGESL_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7691955566406	2	479.769448	957.524344	-0.016878	-8.0975E-06	0.1928	9.2501E-05	0.17592	8.4403E-05	479.7693866283587	40.905	0.72654	40.769	40.488	41.215	-0.13553					41	18	4	0	0	0	0.053401	2	3589	3575;3589		127.46	17.342	1	2147000			82354	3287	57372	57466	91430;91431	91431					0.04388285783431911
VANLRGESL	9	Unmodified	_VANLRGESL_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.769287109375	2	479.769448	957.524344	-0.32545	-0.00015614	0.3512	0.0001685	0.025752	1.2355E-05	479.7694950348989	41.095	0.77423	40.867	40.581	41.355	-0.2278					38	19	3	0	0	0	0.12914	1	3606	3606		104.06	16.36	1	2080900			82355	3287	57372	57466	91432	91432					0.04388285783431911
VANLRGESL	9	Unmodified	_VANLRGESL_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.7696228027344	2	479.769448	957.524344	-0.68413	-0.00032823	0.57248	0.00027466	-0.11165	-5.3565E-05	479.76963252590184	41.137	0.77018	40.906	40.624	41.394	-0.23029					48	19	4	0	0	0	0.12914	1	3600	3600		104.06	5.4274	1	2130200			82356	3287	57372	57466	91433	91433					0.04388285783431911
VANQAEIVA	9	Unmodified	_VANQAEIVA_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	458.24822998046875	2	457.750724	913.486896	-0.80997	-0.00037076	1.4515	0.00066442	0.64152	0.00029365	457.7510301746539	30.5	1.2041	30.5	30.096	31.3	0					73	28	5	0	0	0	0.6504	1	1995	1995		49.442	3.4896	1	3767600	+		82357	28263	57373	57467	91434	91434					0.026691945178072274
VANQWRDTL	9	Unmodified	_VANQWRDTL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.311279296875	2	551.78563	1101.55671	-0.076504	-4.2214E-05	0.10381	5.7283E-05	0.02731	1.5069E-05	551.7854915416129	32.276	0.59552	32.04	31.782	32.378	-0.23667					30	13	3	0	0	0	0.024506	1	2191	2191		30.504	0	1	218840	+		82358	20191	57374	57468	91435	91435					0.00999073186426358
VANQWRDTL	9	Unmodified	_VANQWRDTL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.311767578125	2	551.78563	1101.55671	0.3232	0.00017834	-0.39234	-0.00021649	-0.06914	-3.815E-05	551.7851745654315	32.337	0.60038	32.144	31.856	32.457	-0.19261					27	13	3	0	0	0	0.024457	1	2189	2189		29.15	7.1897	1	247810	+		82359	20191	57374	57468	91436	91436					0.00999073186426358
VANQWRDTL	9	Unmodified	_VANQWRDTL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.78563	1101.55671	-0.68969	-0.00038056	-1.5703	-0.00086649	-2.26	-0.001247	551.785751500658	32.559	0.67936	32.559	32.3	32.979	0	0.34482	-0.0018289	NaN	29.15	34	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229730	+		82360	20191	57374	57468							0.00999073186426358
VANQWRDTL	9	Unmodified	_VANQWRDTL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.78563	1101.55671	-0.8642	-0.00047685	0.29894	0.00016495	-0.56525	-0.0003119	551.785885834732	32.28	0.4541	32.292	32.104	32.558	0.011799	0.078381	0.00023393	NaN	29.15	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312530	+		82361	20191	57374	57468							0.00999073186426358
VANQWRDTL	9	Unmodified	_VANQWRDTL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.78563	1101.55671	-0.662	-0.00036528	0.23986	0.00013235	-0.42214	-0.00023293	551.785897469026	32.07	0.61913	32.133	31.921	32.54	0.062885	-0.080815	0.00016872	NaN	29.15	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177960	+		82362	20191	57374	57468							0.00999073186426358
VAPALYRLT	9	Unmodified	_VAPALYRLT_					0	0	0			REV__ENST00000462742.1_1_21:45755312-45758250:-|nuORF	REV__ENST00000462742.1_1_21:45755312-45758250:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.2699279785156	2	502.300384	1002.58622	-0.38479	-0.00019328	1.4718	0.00073929	1.087	0.00054601	502.3008702040963	39.717	0.49655	39.487	39.275	39.771	-0.23021					23	12	2	0	0	0	0.024497	1	3382	3382		13.775	0	1	346460	+		82363	32914	57375	57469	91437	91437					0.08502637202559526
VAPFEVRLY	9	Unmodified	_VAPFEVRLY_					0	0	0		ENSG00000120337|ENST00000404377|TNFSF18	ENSG00000120337|ENST00000404377|TNFSF18	ENSG00000120337|ENST00000404377|TNFSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.3033447265625	2	547.305667	1092.59678	-1.034	-0.00056593	-2.9568	-0.0016183	-3.9909	-0.0021842	547.3040135815362	37.253	0.96876	37.034	36.647	37.615	-0.2195					55	24	3	0	0	0	0.62163	1	3007	3007		51.335	10.763	1	4289300			82364	3811	57376	57470	91438	91438					0.05418619857005069
VAPGIMGILS	10	Unmodified	_VAPGIMGILS_					0	0	0			REV__ENSG00000119899|ENST00000355773|SLC17A5	REV__ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.28131103515625	2	479.275521	956.536489	0.70366	0.00033725	4.4553	0.0021353	5.1589	0.0024726	479.27737502520233	96.231	2.3544	96.108	95.378	97.732	-0.12305					131	53	5	0	0	0	1.0142	1	11867	11867		44.117	3.5442	1	1695100	+		82365	22495	57377	57471	91439	91439					0.05648186202256511
VAPGQPGVE	9	Unmodified	_VAPGQPGVE_					0	0	0			REV__ENSG00000127586|ENST00000262315|CHTF18	REV__ENSG00000127586|ENST00000262315|CHTF18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.2712707519531	2	427.224342	852.434132	-0.51703	-0.00022089	2.0273	0.00086609	1.5102	0.0006452	427.22508417689386	39.69	0.59898	39.714	39.49	40.089	0.023727					24	16	2	0	0	0	0.024262	1	3378	3378		57.811	39.487	1	146520	+		82366	22941	57378	57472	91440	91440					0.0020123645499552367
VAPNGFQLL	9	Unmodified	_VAPNGFQLL_					0	0	0			REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF	REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.77117919921875	2	479.77146	957.528367	0.28083	0.00013473	-0.43041	-0.0002065	-0.14958	-7.1765E-05	479.771175165179	74.985	1.3386	74.726	73.986	75.325	-0.25887					89	32	5	0	0	0	0.70186	1	9137	9137		45.952	1.4209	1	8055700	+		82367	32800	57379	57473	91441	91441					0.04790375277127623
VAPPARVAP	9	Unmodified	_VAPPARVAP_					0	0	0		HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	HIVEP3|p.P2147Sfs*12|1|0.28|ENSG00000127124|chr1:41511220-41511233|TGAGCAGGGCCGGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.266357421875	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	0.55828	1	4090	4090		55.504	20.303	1	3361200			82368	4229	57380	57474	91442	91442					0.07493812342556794
VAPQQTMC	8	Unmodified	_VAPQQTMC_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1;ENSG00000130558|ENST00000371793|OLFM1;nc|ENSG00000130558|Q99784-4|OLFM1;nc|ENSG00000130558|Q99784-2|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	439.2663269042969	2	439.198956	876.383359	-0.63646	-0.00027953	-0.58428	-0.00025661	-1.2207	-0.00053615	439.1995259157179	43.517	0.32584	43.517	43.332	43.658	0					16	8	3	0	0	0	0.027866	1	4067	4067		63.306	20.832	1	104600			82369	18267	57381	57475	91443	91443					-0.05977752185856389
VAPQQTMC	8	Unmodified	_VAPQQTMC_					0	0	0		nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1;ENSG00000130558|ENST00000371793|OLFM1;nc|ENSG00000130558|Q99784-4|OLFM1;nc|ENSG00000130558|Q99784-2|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	nc|ENSG00000130558|Q99784-3|OLFM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.26605224609375	2	439.198956	876.383359	0.43604	0.00019151	-0.33202	-0.00014582	0.10402	4.5687E-05	439.19872991954645	43.516	0.32482	43.547	43.34	43.664	0.030827					13	8	2	0	0	0	0.027866	1	4020	4020		44.117	10.601	1	146540			82370	18267	57381	57475	91444	91444					-0.05977752185856389
VAPSAPGRVL	10	Unmodified	_VAPSAPGRVL_					0	0	0		MYOM2|p.V611A|1|0.41|ENSG00000036448|chr8:2092349-2092349|T/C|missense_variant	MYOM2|p.V611A|1|0.41|ENSG00000036448|chr8:2092349-2092349|T/C|missense_variant	MYOM2|p.V611A|1|0.41|ENSG00000036448|chr8:2092349-2092349|T/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7905578613281	2	483.790184	965.565815	-0.89839	-0.00043463	0.22188	0.00010734	-0.67651	-0.00032729	483.79028072148355	45.957	1.843	45.805	45.211	47.054	-0.15156					113	51	5	0	0	0	0.98754	1	4528	4528		47.657	0	1	22498000			82371	18016	57382	57476	91445	91445					0.08165466542754984
VAPVKVHQ	8	Unmodified	_VAPVKVHQ_					0	0	0		ENSG00000155875|ENST00000380534|SAXO1	ENSG00000155875|ENST00000380534|SAXO1	ENSG00000155875|ENST00000380534|SAXO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2663879394531	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	0.93274	1	4036	4036		47.916	5.4411	1	3361200			82372	6493	57383	57477	91446	91446					0.07493812342568162
VAPVKVHQ	8	Unmodified	_VAPVKVHQ_					0	0	0		ENSG00000155875|ENST00000380534|SAXO1	ENSG00000155875|ENST00000380534|SAXO1	ENSG00000155875|ENST00000380534|SAXO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.26666259765625	2	439.266345	876.518136	-0.47805	-0.00020999	0.71342	0.00031338	0.23537	0.00010339	439.26654545883497	43.416	2.7354	43.277	42.521	45.256	-0.13929					191	77	3	0	0	0	0.91239	2	4083	4083;4109		50.025	1.9018	1	3268000			82373	6493	57383	57477	91447;91448	91447					0.07493812342568162
VAPVLLLEDV	10	Unmodified	_VAPVLLLEDV_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7748413085938	2	534.320983	1066.62741	-1.0039	-0.00053642	1.3881	0.00074171	0.38421	0.00020529	534.321583503198	50.371	0.39893	50.371	50.21	50.609	0					20	11	2	0	0	0	0.03519	1	5313	5313		44.117	16.235	1	277570			82374	10614	57384	57478	91449	91449					0.09676353451368414
VAPVVCCQ	8	Unmodified	_VAPVVCCQ_					0	0	0			REV__ENST00000362097.1_1_X:49354144-49355288:+|nuORF	REV__ENST00000362097.1_1_X:49354144-49355288:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.7423095703125	2	409.698592	817.382631	1.459	0.00059775	-2.8919	-0.0011848	-1.4329	-0.00058706	409.6975096107161	55.207	0.10028	55.207	55.149	55.249	0					4	2	2	0	0	0	0.027866	1	6092	6092		39.021	9.18	1	106880	+		82375	30966	57385	57479	91450	91450					-0.03336546834918863
VAPVVILGT	9	Unmodified	_VAPVVILGT_					0	0	0		ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.7803039550781	2	434.778754	867.542954	-0.77622	-0.00033748	4.009	0.001743	3.2328	0.0014056	434.780341833039	38.941	1.099	38.776	38.554	39.653	-0.16458					92	29	4	0	0	0	1.0051	1	3260	3260		19.36	0	1	3470400			82376	7510	57386	57480	91451	91451					0.10388447425293634
VAQHAEAMD	9	Unmodified	_VAQHAEAMD_					0	0	0			REV__ENST00000295404.9_1_19:50194996-50204826:+|nuORF	REV__ENST00000295404.9_1_19:50194996-50204826:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.28125	2	486.216192	970.41783	-0.25941	-0.00012613	-4.2913	-0.0020865	-4.5507	-0.0022126	486.2145604150195	89.446	0.20945	89.446	89.313	89.523	0					8	4	2	0	0	0	0.024506	1	11300	11300		30.504	0	1	49097	+		82377	29980	57387	57481	91452	91452					-0.06856212773413972
VAQLQKQLS	9	Unmodified	_VAQLQKQLS_					0	0	0			REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7408752441406	2	507.800749	1013.58694	-0.74894	-0.00038031	-0.24624	-0.00012504	-0.99518	-0.00050535	507.80067124828184	51.457	0.64965	51.181	50.891	51.54	-0.27643					36	16	3	0	0	0	0.024374	1	5298	5298		49.442	35.988	1	798910	+		82378	24525	57388	57482	91453	91453					0.08069431851606623
VAQQFPVPH	9	Unmodified	_VAQQFPVPH_					0	0	0			REV__ENST00000595934.1_1_19:50360913-50361129:+|nuORF	REV__ENST00000595934.1_1_19:50360913-50361129:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.750244140625	2	511.774534	1021.53451	-0.9243	-0.00047303	-3.0775	-0.001575	-4.0018	-0.002048	511.77284749622265	25.156	0.533	25.156	24.83	25.363	0					19	12	2	0	0	0	0.024412	1	1190	1190		31.955	17.09	1	86046	+		82379	35790	57389	57483	91454	91454					0.02460893508657591
VAQQFPVPH	9	Unmodified	_VAQQFPVPH_					0	0	0			REV__ENST00000595934.1_1_19:50360913-50361129:+|nuORF	REV__ENST00000595934.1_1_19:50360913-50361129:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	511.774534	1021.53451	-0.038527	-1.9717E-05	-4.1372	-0.0021173	-4.1757	-0.002137	511.7722298776085	25.091	0.41592	25.171	24.961	25.377	0.08009	-0.0060695	-0.00061127	NaN	17.365	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80998	+		82380	35790	57389	57483							0.02460893508657591
VAREYTDL	8	Unmodified	_VAREYTDL_					0	0	0		RTN4|p.L885V|1|0.65|ENSG00000115310|chr2:55025446-55025446|A/C|missense_variant	RTN4|p.L885V|1|0.65|ENSG00000115310|chr2:55025446-55025446|A/C|missense_variant	RTN4|p.L885V|1|0.65|ENSG00000115310|chr2:55025446-55025446|A/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7486267089844	2	483.748182	965.481811	-0.06475	-3.1323E-05	0.51648	0.00024985	0.45173	0.00021853	483.7484727760296	68.574	0.93627	68.593	68.276	69.212	0.018913					71	24	5	0	0	0	0.94517	1	8139	8139		45.952	2.3259	1	4063700			82381	37848	57390	57484	91455	91455					-0.002311093448156498
VARFDLEEE	9	Unmodified	_VARFDLEEE_					0	0	0			REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7875366210938	2	554.269478	1106.5244	0.10687	5.9237E-05	-1.8959	-0.0010508	-1.789	-0.0009916	554.2702998976955	82.36	0.26053	82.179	82.114	82.374	-0.18079					8	5	2	0	0	0	0.024506	1	9922	9922		30.504	1.3541	1	26415	+		82382	26032	57391	57485	91456	91456					-0.02459759007251705
VARGGGVAASL	11	Unmodified	_VARGGGVAASL_					0	0	0			REV__ENST00000367196.3_3_11:1783371-1783533:-|nuORF	REV__ENST00000367196.3_3_11:1783371-1783533:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2778015136719	2	479.277441	956.540328	-0.050895	-2.4393E-05	0.92199	0.00044189	0.87109	0.0004175	479.2776228774827	96.341	2.321	96.184	95.4	97.721	-0.15646					118	52	5	0	0	0	0.98542	1	11896	11896		40.058	2.8991	1	1642300	+		82383	31007	57392	57486	91457	91457					0.06031992020314192
VARGGTLGASL	11	Unmodified	_VARGGTLGASL_					0	0	0			REV__ENST00000397981.7_1_19:7968762-7974950:+|nuORF	REV__ENST00000397981.7_1_19:7968762-7974950:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2906799316406	2	501.290548	1000.56654	-0.25386	-0.00012726	-0.032713	-1.6399E-05	-0.28657	-0.00014365	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.99553	1	10154	10154		37.812	0.65241	1	2648000	+		82384	31792	57393	57487	91458	91458					0.06628261191815454
VARKSAPATG	10	Unmodified	_VARKSAPATG_					0	0	0		ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2775573730469	2	479.277441	956.540328	0.63902	0.00030627	-0.86315	-0.00041369	-0.22414	-0.00010742	479.2771210125938	81.156	2.9484	80.92	79.122	82.071	-0.23574					188	70	3	0	0	0	1.0719	1	9789	9789		36.447	0	1	2107600			82385	7790	57394	57488	91459	91459					0.060319920203255606
VARKSAPATG	10	Unmodified	_VARKSAPATG_					0	0	0		ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2775573730469	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	1.1088	1	10141	10141		31.53	0	1	7774800			82386	7790	57394	57488	91460	91460					0.060319920203255606
VARKSAPATG	10	Unmodified	_VARKSAPATG_					0	0	0		ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2774353027344	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	1.118	1	10185	10185		30.318	0.47618	1	7158600			82387	7790	57394	57488	91461	91461					0.060319920203255606
VARLEKQN	8	Unmodified	_VARLEKQN_					0	0	0		ENSG00000162373|ENST00000371833|BEND5	ENSG00000162373|ENST00000371833|BEND5	ENSG00000162373|ENST00000371833|BEND5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2774353027344	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	1.0106	1	10090	10090		35.618	0	1	7158600			82388	6930	57395	57489	91462	91462					0.06031992020314192
VARLRREH	8	Unmodified	_VARLRREH_					0	0	0			REV__nc|ENSG00000240403|P43630-2|KIR3DL2	REV__nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.8103637695312	2	518.809774	1035.60499	-0.39184	-0.00020329	1.5002	0.00077833	1.1084	0.00057504	518.8104013285716	95.186	1.339	95.049	94.68	96.019	-0.13689					62	30	3	0	0	0	0.94517	2	11738	11726;11738		45.952	1.8352	1	1542000	+		82389	28960	57396	57490	91463;91464	91464					0.08861611616976006
VARLRREH	8	Unmodified	_VARLRREH_					0	0	0			REV__nc|ENSG00000240403|P43630-2|KIR3DL2	REV__nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.8104248046875	2	518.809774	1035.60499	0.53798	0.00027911	0.45748	0.00023734	0.99546	0.00051645	518.8099775695938	96.776	1.4907	96.639	95.978	97.468	-0.13671					99	33	4	0	0	0	0.89627	2	11971	11959;11971		51.335	7.2187	1	1624000	+		82390	28960	57396	57490	91465;91466	91466					0.08861611616976006
VARLRREH	8	Unmodified	_VARLRREH_					0	0	0			REV__nc|ENSG00000240403|P43630-2|KIR3DL2	REV__nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.8108520507812	2	518.809774	1035.60499	1.0782	0.00055937	-0.0087816	-4.556E-06	1.0694	0.00055482	518.80965249002	96.763	1.4917	96.64	96.108	97.599	-0.12305					65	33	3	0	0	0	1.0009	1	11957	11957		37.159	0	1	2118600	+		82391	28960	57396	57490	91467	91467					0.08861611616976006
VARLRREH	8	Unmodified	_VARLRREH_					0	0	0			REV__nc|ENSG00000240403|P43630-2|KIR3DL2	REV__nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	518.809774	1035.60499	0.53798	0.00027911	0.45748	0.00023734	0.99546	0.00051645	518.8099775695938	96.776	1.4907	96.639	95.978	97.468	-0.13671	0.0068046	4.6071E-05	NaN	51.335	99	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1624000	+		82392	28960	57396	57490							0.08861611616976006
VARMKPILSVK	11	Unmodified	_VARMKPILSVK_					0	0	0			REV__ENST00000465670.1_1_7:2418302-2418434:+|nuORF	REV__ENST00000465670.1_1_7:2418302-2418434:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3927001953125	2	621.391751	1240.76895	0.38115	0.00023684	1.5699	0.0009755	1.951	0.0012123	621.3925178018	103.51	0.68594	103.34	103.12	103.81	-0.17034					47	16	4	0	0	0	1.0183	1	12889	12889		32.751	2.4328	1	476900	+		82393	33012	57397	57491	91468	91468					0.15819448272850423
VARNFSHSRTI	11	Unmodified	_VARNFSHSRTI_					0	0	0			REV__nc|ENSG00000107771|Q9H7U1-2|CCSER2	REV__nc|ENSG00000107771|Q9H7U1-2|CCSER2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	644.3499755859375	2	644.34946	1286.68437	2.0421	0.0013158	-1.6232	-0.0010459	0.41886	0.00026989	644.3482775431247	110.37	0.78791	110.37	110.02	110.81	0					74	23	5	0	0	0	1.0233	1	14022	14022		31.634	1.0654	1	637790	+		82394	21684	57398	57492	91469	91469					0.05249213780462014
VARNFSHSRTI	11	Unmodified	_VARNFSHSRTI_					0	0	0			REV__nc|ENSG00000107771|Q9H7U1-2|CCSER2	REV__nc|ENSG00000107771|Q9H7U1-2|CCSER2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	644.3499755859375	2	644.34946	1286.68437	0.27072	0.00017444	0.11961	7.7072E-05	0.39034	0.00025151	644.3494009474977	110.4	0.73016	110.41	110.11	110.84	0.0062943					57	20	4	0	0	0	1.013	1	13916	13916		33.922	11.962	1	415830	+		82395	21684	57398	57492	91470	91470					0.05249213780462014
VARNVALGN	9	Unmodified	_VARNVALGN_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2641296386719	2	457.264333	912.514114	0.19667	8.9932E-05	-0.16674	-7.6245E-05	0.029932	1.3687E-05	457.2641530854736	78.972	2.3995	78.741	77.586	79.985	-0.23141					139	56	5	0	0	0	0.94809	1	9442	9442		29.15	0	1	1085400			82396	9881	57399	57493	91471	91471					0.054357228488470355
VARPAPVAV	9	Unmodified	_VARPAPVAV_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000505366.1_1_5:32406854-32444764:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	440.2742614746094	2	440.27417	878.533787	0.14736	6.4881E-05	-0.2494	-0.0001098	-0.10203	-4.4922E-05	440.2740269953773	42.966	0.76336	42.827	42.521	43.284	-0.13929					50	20	3	0	0	0	0.29104	1	3991	3991		76.847	8.3619	1	12225000			82397	1195	57400	57494	91472	91472					0.08966098859605154
VARPFLLPYLC	11	Unmodified	_VARPFLLPYLC_					0	0	0			REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|38	REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|38	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	646.3651123046875	2	646.365201	1290.71585	-2.1546	-0.0013927	2.9026	0.0018761	0.74801	0.00048349	646.3670544986726	46.371	0.64639	46.274	45.999	46.645	-0.096649					62	17	5	0	0	0	1.0651	1	4468	4468		20.947	0.95016	1	16880000	+		82398	19375	57401	57495	91473	91473					0.08212070490208134
VARPTRDLHL	10	Unmodified	_VARPTRDLHL_					0	0	0			REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3430786132812	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	0.86389	1	11570	11570		56.434	13.57	1	15816000	+		82399	30145	57402	57496	91474	91474					0.09147016757128767
VARPTRDLHL	10	Unmodified	_VARPTRDLHL_					0	0	0			REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.343646	1176.67274	-0.33817	-0.0001993	-1.0615	-0.00062561	-1.3997	-0.0008249	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0616	1	11080	11080		37.812	0	1	6196800	+		82400	30145	57402	57496	91475	91475					0.09147016757128767
VARPVSVGL	9	Unmodified	_VARPVSVGL_					0	0	0		nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.2783203125	2	449.279452	896.544351	0.14861	6.6767E-05	-0.47566	-0.0002137	-0.32705	-0.00014694	449.27904975027144	57.586	0.99926	57.586	57.266	58.266	0					45	26	3	0	0	0	0.15029	1	6508	6508		99.375	5.3685	1	4179000			82401	1415	57403	57497	91476	91476					0.09194081514044683
VARPVSVGL	9	Unmodified	_VARPVSVGL_					0	0	0		nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.280029296875	2	449.279452	896.544351	0.072224	3.2449E-05	-0.074081	-3.3283E-05	-0.0018566	-8.3415E-07	449.27930437967393	57.839	0.90779	57.664	57.345	58.252	-0.1749					36	24	2	0	0	0	0.25032	2	6512	6501;6512		82.305	7.5735	1	3673500			82402	1415	57403	57497	91477;91478	91478					0.09194081514044683
VARPVSVGL	9	Unmodified	_VARPVSVGL_					0	0	0		nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;nc|ENSG00000070047|Q9P1Y6-2|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	nc|ENSG00000070047|Q9P1Y6-3|PHRF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.2782287597656	2	449.279452	896.544351	-0.47153	-0.00021185	0.67983	0.00030543	0.2083	9.3587E-05	449.2796187371609	57.551	1.0558	57.646	57.281	58.337	0.095306					46	28	2	0	0	0	0.25032	2	6406	6406;6419		82.305	8.05	1	2806900			82403	1415	57403	57497	91479;91480	91479					0.09194081514044683
VARRAGAVHTL	11	Unmodified	_VARRAGAVHTL_					0	0	0		ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8428955078125	2	575.843813	1149.67307	-2.0743	-0.0011945	0.6137	0.00035339	-1.4606	-0.00084106	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	0.96599	1	11506	11506		44.377	11.565	1	5238400			82404	3240	57404	57498	91481	91481					0.10422436476983421
VARRPRDLPA	10	Unmodified	_VARRPRDLPA_					0	0	0		ENST00000523994.1_1_8:37620177-37624049:+|nuORF;ENST00000520073.5_1_8:37620150-37623956:+|nuORF;ENSG00000147471|ENST00000328195|PLPBP	ENST00000523994.1_1_8:37620177-37624049:+|nuORF	ENST00000523994.1_1_8:37620177-37624049:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.8433227539062	2	575.843813	1149.67307	-2.0743	-0.0011945	0.6137	0.00035339	-1.4606	-0.00084106	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.0992	1	11589	11589		32.812	0	1	5238400			82405	5970	57405	57499	91482	91482					0.10422436476983421
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	466.6080322265625	3	466.608098	1396.80247	0.02491	1.1623E-05	-0.14293	-6.6691E-05	-0.11802	-5.5068E-05	466.60793572858927	100.17	2.0135	100.17	99.98	101.99	0					84	47	2	0	0	0	1.0739	1	12855	12855		18.531	0.69791	1	846240	+		82406	31014	57406	57500	91483	91483					0.11993630879624106
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	466.6078796386719	3	466.608098	1396.80247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.24	1	100.25	99.748	100.75	0.010117								0	0	0	1.4277	1	12788	12788		19.263	1.4295	1		+		82407	31014	57406	57500	91484	91484					0.11993630879624106
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.9417724609375	3	466.608098	1396.80247	-0.089898	-4.1947E-05	-0.013996	-6.5305E-06	-0.10389	-4.8478E-05	466.6080804541521	100.51	2.3323	100.33	99.316	101.65	-0.17088					127	63	3	0	0	0	1.0532	1	12450	12450		24.232	2.4514	1	684720	+		82408	31014	57406	57500	91485	91485					0.11993630879624106
VARSAPASAV	10	Unmodified	_VARSAPASAV_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.7641296386719	2	464.764166	927.513779	-0.64183	-0.0002983	-0.48559	-0.00022569	-1.1274	-0.00052398	464.76391900973266	33.571	0.91515	33.571	33.135	34.05	0					73	24	5	0	0	0	0.91678	1	2441	2441		52.937	0	1	16958000	+		82409	28095	57407	57501	91486	91486					0.047123031289856954
VARSAYEI	8	Unmodified	_VARSAYEI_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.74468994140625	2	454.745442	907.476331	0.47062	0.00021401	-1.899	-0.00086356	-1.4284	-0.00064954	454.74449165346823	101.24	1.4761	101.24	100.76	102.24	-0.0054474					99	33	4	0	0	0	1.0338	1	12864	12864		31.955	5.2619	1	3938500			82410	5547	57408	57502	91487	91487					0.01889211863363016
VARSAYEI	8	Unmodified	_VARSAYEI_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7447204589844	2	454.745442	907.476331	0.6119	0.00027826	-1.9362	-0.0008805	-1.3243	-0.00060224	454.74447025012137	101.61	1.8033	101.48	100.73	102.53	-0.13157					101	41	4	0	0	0	1.0338	1	12604	12604		31.955	0	1	2784600			82411	5547	57408	57502	91488	91488					0.01889211863363016
VARSAYEI	8	Unmodified	_VARSAYEI_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7447204589844	2	454.745442	907.476331	0.2342	0.0001065	-1.5466	-0.00070332	-1.3124	-0.00059682	454.744657043267	101.69	1.5633	101.56	100.98	102.54	-0.12576					94	37	4	0	0	0	1.0239	1	12671	12671		33.516	4.366	1	2405200			82412	5547	57408	57502	91489	91489					0.01889211863363016
VARVIAGYS	9	Unmodified	_VARVIAGYS_					0	0	0			REV__nc|ENSG00000204701|O76001|OR2J3	REV__nc|ENSG00000204701|O76001|OR2J3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.268798828125	2	468.269084	934.523616	-0.28939	-0.00013551	0.32376	0.00015161	0.034369	1.6094E-05	468.26914846799536	43.033	1.1605	43.033	42.534	43.695	0					95	31	4	0	0	0	0.33245	1	4010	4010		71.296	0	1	6354200	+		82413	37082	57409	57503	91490	91490					0.05373491134366759
VASAVKRPF	9	Unmodified	_VASAVKRPF_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2687072753906	2	487.792727	973.5709	-0.11836	-5.7733E-05	1.1949	0.00058288	1.0766	0.00052514	487.79256718655944	47.147	1.9222	46.994	46.135	48.057	-0.15301					105	54	2	0	0	0	0.024405	1	4612	4612		44.117	3.5442	1	527940			82414	8985	57410	57504	91491	91491					0.08305770405377189
VASDVVRKV	9	Unmodified	_VASDVVRKV_					0	0	0		ENSG00000063660|ENST00000264039|GPC1;nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF	ENSG00000063660|ENST00000264039|GPC1	ENSG00000063660|ENST00000264039|GPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.7952880859375	2	486.795466	971.57638	-0.51032	-0.00024842	0.3759	0.00018299	-0.13442	-6.5433E-05	486.79549030719994	30.918	1.0354	30.677	30.038	31.073	-0.24109					54	24	4	0	0	0	0.54416	1	2012	2012		56.434	6.9922	1	1000200			82415	1264	57411	57505	91492	91492					0.08945449197187827
VASDVVRKV	9	Unmodified	_VASDVVRKV_					0	0	0		ENSG00000063660|ENST00000264039|GPC1;nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF	ENSG00000063660|ENST00000264039|GPC1	ENSG00000063660|ENST00000264039|GPC1	MSMS	OPSCC_40_ClassI_Rep-2	5	486.7956237792969	2	486.795466	971.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.845	1	30.667	30.167	31.167	-0.17818								0	0	0	0.14369	1	1997	1997		82.75	10.873	1				82416	1264	57411	57505	91493	91493					0.08945449197187827
VASDVVRKV	9	Unmodified	_VASDVVRKV_					0	0	0		ENSG00000063660|ENST00000264039|GPC1;nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF	ENSG00000063660|ENST00000264039|GPC1	ENSG00000063660|ENST00000264039|GPC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7953796386719	2	486.795466	971.57638	0.081021	3.9441E-05	-0.25873	-0.00012595	-0.17771	-8.6508E-05	486.7951985209379	30.896	0.67883	30.743	30.553	31.232	-0.15231					41	16	4	0	0	0	0.17845	2	1987	1987;1997		93.143	18.103	1	972000			82417	1264	57411	57505	91494;91495	91494					0.08945449197187827
VASGLRAGL	9	Unmodified	_VASGLRAGL_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	422.2560729980469	2	422.255977	842.497401	-0.12014	-5.0728E-05	-0.21418	-9.0438E-05	-0.33431	-0.00014117	422.2558311791269	21.924	0.67052	21.733	21.324	21.994	-0.19072					31	13	4	0	0	0	0.31247	1	724	724		73.975	2.5968	1	640430	+		82418	26598	57412	57506	91496	91496					0.06985221962906962
VASISKRR	8	Unmodified	_VASISKRR_					0	0	0			REV__ENST00000589453.5_1_19:9875654-9879114:-|nuORF	REV__ENST00000589453.5_1_19:9875654-9879114:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.7876281738281	2	458.787976	915.561398	-0.2269	-0.0001041	-1.4744	-0.00067643	-1.7013	-0.00078052	458.7872764164579	92.323	1.6929	92.2	91.76	93.453	-0.12242					146	39	6	0	0	0	1.043	1	11325	11325		30.504	3.7075	1	20312000	+		82419	35678	57413	57507	91497	91497					0.10024002119848774
VASLGNQKEPL	11	Unmodified	_VASLGNQKEPL_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3199462890625	2	578.322045	1154.62954	-0.10983	-6.3517E-05	-2.6051	-0.0015066	-2.7149	-0.0015701	578.3208506804065	91.109	3.046	90.97	89.617	92.663	-0.13941					173	72	3	0	0	0	1.013	1	11158	11158		33.922	1.1092	1	506690	+		82420	25659	57414	57508	91498	91498					0.058407821891933054
VASLGNQKEPL	11	Unmodified	_VASLGNQKEPL_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.322045	1154.62954	-2.2265	-0.0012876	-0.26622	-0.00015396	-2.4927	-0.0014416	578.322382064303	90.822	2.0856	90.822	90.054	92.139	0	-0.082361	0.0016925	NaN	33.922	109	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355400	+		82421	25659	57414	57508							0.058407821891933054
VASLGNQKEPL	11	Unmodified	_VASLGNQKEPL_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	578.322045	1154.62954	-0.53913	-0.00031179	-1.9055	-0.001102	-2.4447	-0.0014138	578.3213840264743	90.984	2.0348	90.972	90.12	92.155	-0.012383	0.067337	-0.00020356	NaN	33.922	108	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367780	+		82422	25659	57414	57508							0.058407821891933054
VASLGNQKEPL	11	Unmodified	_VASLGNQKEPL_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	578.322045	1154.62954	0.083317	4.8184E-05	-2.6193	-0.0015148	-2.536	-0.0014666	578.3210992917448	90.927	1.9572	90.938	90.158	92.116	0.011276	0.033734	-0.0010291	NaN	33.922	82	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360810	+		82423	25659	57414	57508							0.058407821891933054
VASLGNQKEPL	11	Unmodified	_VASLGNQKEPL_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	578.322045	1154.62954	-1.2728	-0.00073606	-1.6892	-0.00097689	-2.9619	-0.0017129	578.3216124617642	90.942	2.4944	90.787	90.022	92.517	-0.1552	-0.11777	4.6693E-05	NaN	33.922	120	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522250	+		82424	25659	57414	57508							0.058407821891933054
VASLGNQKEPL	11	Unmodified	_VASLGNQKEPL_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.322045	1154.62954	-0.99192	-0.00057365	-2.0543	-0.0011881	-3.0462	-0.0017617	578.3213859390428	91.061	2.535	90.938	90.05	92.586	-0.12341	0.033551	-0.00037565	NaN	33.922	142	60	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459960	+		82425	25659	57414	57508							0.058407821891933054
VASLGNQKEPL	11	Unmodified	_VASLGNQKEPL_					0	0	0			REV__ENSG00000163930|ENST00000460680|BAP1	REV__ENSG00000163930|ENST00000460680|BAP1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	578.322045	1154.62954	-0.10983	-6.3517E-05	-2.6051	-0.0015066	-2.7149	-0.0015701	578.3208506804065	91.109	3.046	90.97	89.617	92.663	-0.13941	0.06551	-0.0010127	NaN	33.922	173	72	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506690	+		82426	25659	57414	57508							0.058407821891933054
VASLHSFLL	9	Unmodified	_VASLHSFLL_					0	0	0			REV__ENSG00000171864|ENST00000305817|PRND	REV__ENSG00000171864|ENST00000305817|PRND	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7902526855469	2	493.78711	985.559667	1.0855	0.000536	-2.4045	-0.0011873	-1.319	-0.00065131	493.78570443970716	59.934	1.2157	59.934	59.257	60.473	0					74	32	4	0	0	0	0.80658	1	6880	6880		38.806	3.1879	1	3637500	+		82427	26612	57415	57509	91499	91499					0.06630948311226348
VASLMEVAIL	10	Unmodified	_VASLMEVAIL_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3040771484375	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	1.0142	1	11151	11151		44.117	3.3386	1	11993000	+		82428	24424	57416	57510	91500	91500					0.06840724545213561
VASLMEVAIL	10	Unmodified	_VASLMEVAIL_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3038330078125	2	523.301736	1044.58892	-0.39587	-0.00020716	3.6036	0.0018858	3.2077	0.0016786	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	1.1267	1	10807	10807		29.15	1.0681	1	14072000	+		82429	24424	57416	57510	91501	91501					0.06840724545213561
VASLMEVAIL	10	Unmodified	_VASLMEVAIL_					0	0	0			REV__ENSG00000145703|ENST00000274364|IQGAP2	REV__ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.301736	1044.58892	0.14525	7.6008E-05	2.9462	0.0015418	3.0914	0.0016178	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	1.0781	1	10716	10716		35.618	2.8059	1	14210000	+		82430	24424	57416	57510	91502	91502					0.06840724545213561
VASLQHKG	8	Unmodified	_VASLQHKG_					0	0	0		ENSG00000142609|ENST00000682832|CFAP74;ENST00000412120.2_1_1:1853728-1858343:-|nuORF;ENST00000464311.5_1_1:1853728-1858229:-|nuORF	ENSG00000142609|ENST00000682832|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.24102783203125	2	420.240327	838.466101	0.19337	8.1263E-05	-0.0055441	-2.3299E-06	0.18783	7.8933E-05	420.24034106984726	37.327	1.653	37.134	36.335	37.988	-0.193					116	43	4	0	0	0	0.83003	1	3031	3031		56.721	3.7844	1	19678000			82431	5574	57417	57511	91503	91503					0.040406489287988734
VASLRPRPWL	10	Unmodified	_VASLRPRPWL_					0	0	0		ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8562622070312	2	597.858932	1193.70331	-1.6739	-0.0010008	-2.9165	-0.0017437	-4.5904	-0.0027444	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.0271	1	11750	11750		42.396	3.1433	1	4454900			82432	17488	57418	57512	91504	91504					0.11420795142180395
VASLRPRPWL	10	Unmodified	_VASLRPRPWL_					0	0	0		ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8566284179688	2	597.858932	1193.70331	-1.0361	-0.00061944	-3.5653	-0.0021315	-4.6014	-0.002751	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.0271	1	11789	11789		42.396	0.96952	1	4942300			82433	17488	57418	57512	91505	91505					0.11420795142180395
VASLRPRPWL	10	Unmodified	_VASLRPRPWL_					0	0	0		ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8558349609375	2	597.858932	1193.70331	-1.8915	-0.0011309	-2.7233	-0.0016281	-4.6148	-0.002759	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.0271	1	11355	11355		42.396	2.338	1	5655800			82434	17488	57418	57512	91506	91506					0.11420795142180395
VASLRPRPWL	10	Unmodified	_VASLRPRPWL_					0	0	0		ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563842773438	2	597.858932	1193.70331	-0.56214	-0.00033608	-4.1507	-0.0024815	-4.7128	-0.0028176	597.8562796364726	92.731	2.8372	92.609	91.717	94.554	-0.12241					268	66	5	0	0	0	0.98754	2	11422	11422;11543		47.657	4.4825	1	5880700			82435	17488	57418	57512	91507;91508	91507					0.11420795142180395
VASMALITSR	10	Unmodified	_VASMALITSR_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.258056640625	2	524.794609	1047.57467	-0.2592	-0.00013603	-0.34357	-0.0001803	-0.60277	-0.00031633	524.7932184788032	63.353	0.79774	63.102	62.683	63.48	-0.25141					22	20	2	0	0	0	0.03519	1	7424	7424		45.972	3.5761	1	718900	+		82436	25290	57419	57513	91509	91509					0.052780721169028766
VASMIEGIL	9	Unmodified	_VASMIEGIL_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	466.7591552734375	2	466.759704	931.504854	-0.074523	-3.4784E-05	-3.4751	-0.001622	-3.5496	-0.0016568	466.75793899745094	81.082	1.002	81.106	80.735	81.737	0.023911					56	24	4	0	0	0	0.29104	1	10038	10038		76.847	5.4687	1	1579900	+	+	82437	19568	57420	57514	91510	91510					0.036361934483238656
VASSHMTF	8	Unmodified	_VASSHMTF_					0	0	0		ENST00000544665.7_1_16:31282313-31282355:+|nuORF	ENST00000544665.7_1_16:31282313-31282355:+|nuORF	ENST00000544665.7_1_16:31282313-31282355:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7658996582031	2	440.205096	878.395638	-0.15455	-6.8033E-05	-0.01308	-5.7577E-06	-0.16763	-7.3791E-05	440.20498211961365	36.831	0.97523	36.638	36.139	37.114	-0.193					39	24	2	0	0	0	0.027866	1	2980	2980		37.028	15.069	1	157310			82438	16483	57421	57515	91511	91511					-0.04842392451166688
VASVQLPAL	9	Unmodified	_VASVQLPAL_					0	0	0			REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.27410888671875	2	449.273835	896.533118	-0.084628	-3.8021E-05	0.039474	1.7735E-05	-0.045154	-2.0287E-05	449.27378529470496	56.825	1.2748	56.825	56.07	57.345	0					114	35	4	0	0	0	0.016871	5	6322	6322;6332;6357;6382;6394		152.47	23.609	1	14120000	+		82439	36020	57422	57516	91512;91513;91514;91515;91516	91512					0.08071259419898524
VASVQLPAL	9	Unmodified	_VASVQLPAL_					0	0	0			REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.2740478515625	2	449.273835	896.533118	-0.038526	-1.7309E-05	-0.04396	-1.975E-05	-0.082486	-3.7059E-05	449.27375771357504	56.993	1.5204	56.829	55.95	57.471	-0.16432					125	41	4	0	0	0	0.033448	4	6310	6310;6332;6356;6369		138.83	18.205	1	12477000	+		82440	36020	57422	57516	91517;91518;91519;91520	91517					0.08071259419898524
VASVQLPAL	9	Unmodified	_VASVQLPAL_					0	0	0			REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	449.27423095703125	2	449.273835	896.533118	-0.21244	-9.5445E-05	0.16087	7.2276E-05	-0.05157	-2.3169E-05	449.2738669914797	56.702	1.36	56.8	55.999	57.359	0.097893					117	37	4	0	0	0	0.014013	6	6265	6218;6227;6239;6251;6265;6289		166.78	19.089	1	14918000	+		82441	36020	57422	57516	91521;91522;91523;91524;91525;91526	91525					0.08071259419898524
VASVQLPAL	9	Unmodified	_VASVQLPAL_					0	0	0			REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.27392578125	2	449.273835	896.533118	-0.080622	-3.6221E-05	0.35672	0.00016027	0.2761	0.00012405	449.273864034416	56.852	1.3275	56.685	56.041	57.369	-0.1672					73	34	3	0	0	0	0.11092	1	6176	6176		108.09	17.311	1	1531200	+		82442	36020	57422	57516	91527	91527					0.08071259419898524
VASVQLPAL	9	Unmodified	_VASVQLPAL_					0	0	0			REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.27447509765625	2	449.273835	896.533118	0.26721	0.00012005	-0.024448	-1.0984E-05	0.24276	0.00010907	449.2736802997399	56.961	1.1149	56.759	56.132	57.247	-0.20209					66	29	3	0	0	0	0.033448	1	6193	6193		138.83	30.738	1	1634800	+		82443	36020	57422	57516	91528	91528					0.08071259419898524
VASVQLPAL	9	Unmodified	_VASVQLPAL_					0	0	0			REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	REV__FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.2743225097656	2	449.273835	896.533118	0.12518	5.6239E-05	0.041829	1.8793E-05	0.16701	7.5032E-05	449.27371517612767	57.048	1.3689	56.823	55.952	57.321	-0.22479					72	35	3	0	0	0	0.033448	1	6187	6187		138.83	30.738	1	1784100	+		82444	36020	57422	57516	91529	91529					0.08071259419898524
VASWGLLTLC	10	Unmodified	_VASWGLLTLC_					0	0	0			REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7684326171875	2	531.786253	1061.55795	-1.3564	-0.00072132	2.8257	0.0015027	1.4693	0.00078136	531.7876577448228	25.239	0.46722	25.204	24.771	25.238	-0.034395					12	8	2	0	0	0	0.03519	1	1121	1121		29.15	18.884	1	92233	+		82445	33663	57423	57517	91530	91530					0.02963571230998241
VASWGLLTLC	10	Unmodified	_VASWGLLTLC_					0	0	0			REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.786253	1061.55795	-0.76982	-0.00040938	3.7196	0.001978	2.9498	0.0015687	531.7881356020322	25.657	0.32832	25.43	25.231	25.559	-0.22683	0.13367	0.00014381	NaN	21.96	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91638	+		82446	33663	57423	57517							0.02963571230998241
VASWGLLTLC	10	Unmodified	_VASWGLLTLC_					0	0	0			REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.786253	1061.55795	-0.65701	-0.00034939	4.3003	0.0022868	3.6432	0.0019374	531.7881447523914	25.421	0.33136	25.25	25.039	25.371	-0.17078	-0.046862	0.00076138	NaN	21.96	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77107	+		82447	33663	57423	57517							0.02963571230998241
VASWGLLTLC	10	Unmodified	_VASWGLLTLC_					0	0	0			REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	REV__ENST00000489207.1_1_14:74766721-74769615:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.786253	1061.55795	-0.043229	-2.2988E-05	2.96	0.0015741	2.9168	0.0015511	531.787613015948	25.474	0.28799	25.302	25.118	25.406	-0.17151	0.0055122	-0.00066406	NaN	21.96	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91240	+		82448	33663	57423	57517							0.02963571230998241
VATIKSSL	8	Unmodified	_VATIKSSL_					0	0	0			REV__sp|P0C725|LF2_EBVB9ProteinLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF2PE=1SV=1	REV__sp|P0C725|LF2_EBVB9ProteinLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.74261474609375	2	409.752736	817.490919	1.8967	0.00077719	-0.6329	-0.00025933	1.2638	0.00051786	409.7525034559314	55.445	0.14733	55.445	55.353	55.5	0					5	3	2	0	0	0	0.027866	1	6115	6115		12.207	0	1	40219	+		82449	37557	57424	57518	91531	91531					0.07487284011529027
VATIKSSL	8	Unmodified	_VATIKSSL_					0	0	0			REV__sp|P0C725|LF2_EBVB9ProteinLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF2PE=1SV=1	REV__sp|P0C725|LF2_EBVB9ProteinLF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LF2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.74273681640625	2	409.752736	817.490919	1.2912	0.00052905	-0.68143	-0.00027922	0.60972	0.00024983	409.7518763001727	55.148	0.48729	55.148	54.831	55.319	0					22	13	3	0	0	0	0.027866	1	6067	6067		31.955	0	1	407140	+		82450	37557	57424	57518	91532	91532					0.07487284011529027
VATITEIPP	9	Unmodified	_VATITEIPP_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.27972412109375	2	470.771126	939.527698	0.8485	0.00039945	1.592	0.00074948	2.4405	0.0011489	470.7713846863861	75.532	0.31613	75.542	75.399	75.715	0.010376					11	8	2	0	0	0	0.023355	1	9206	9206		76.847	21.342	1	484980			82451	7094	57425	57519	91533	91533					0.05551535837423671
VATKKAQEW	9	Unmodified	_VATKKAQEW_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.7926635742188	2	530.792924	1059.57129	-0.46051	-0.00024444	-0.032598	-1.7303E-05	-0.49311	-0.00026174	530.7927376056003	24.787	0.65043	24.572	24.336	24.987	-0.2151					40	14	4	0	0	0	0.1158	2	1116	1116;1127		107.01	19.253	1	1554300			82452	6943	57426	57520	91534;91535	91534					0.04389145334562272
VATKKAQEW	9	Unmodified	_VATKKAQEW_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.7928466796875	2	530.792924	1059.57129	-0.61755	-0.00032779	0.09896	5.2527E-05	-0.51859	-0.00027526	530.7929107774216	24.605	0.82439	24.431	24.169	24.993	-0.17484					56	18	5	0	0	0	0.1158	2	1081	1081;1092		107.01	21.56	1	1391700			82453	6943	57426	57520	91536;91537	91536					0.04389145334562272
VATKKAQEW	9	Unmodified	_VATKKAQEW_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.7926025390625	2	530.792924	1059.57129	1.9656	0.0010433	-2.6186	-0.0013899	-0.65298	-0.0003466	530.7914610829649	24.653	0.869	24.472	24.198	25.067	-0.18089					58	19	4	0	0	0	0.1158	2	1073	1063;1073		107.01	13.864	1	1131200			82454	6943	57426	57520	91538;91539	91539					0.04389145334562272
VATLHPLHH	9	Unmodified	_VATLHPLHH_					0	0	0		ENST00000443945.6_1_13:47127426-47279607:+|nuORF;nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1	ENST00000443945.6_1_13:47127426-47279607:+|nuORF	ENST00000443945.6_1_13:47127426-47279607:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7868041992188	2	512.787976	1023.5614	-0.52682	-0.00027015	-1.4622	-0.00074978	-1.989	-0.0010199	512.7869887194586	66.228	0.65099	66.259	65.812	66.463	0.030106					32	19	2	0	0	0	1.0568	1	7810	7810		8.8223	0	1	2029700			82455	4986	57427	57521	91540	91540					0.0505600211985211
VATLILNVD	9	Unmodified	_VATLILNVD_					0	0	0			REV__ENSG00000064115|ENST00000343028|TM7SF3	REV__ENSG00000064115|ENST00000343028|TM7SF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.30035400390625	2	479.2844	956.554247	0.89499	0.00042896	-0.36432	-0.00017461	0.53067	0.00025434	479.2841885703935	72.747	0.69378	72.466	72.18	72.873	-0.28124					22	16	2	0	0	0	0.023837	1	8851	8851		64.207	14.766	1	130460	+		82456	20277	57428	57522	91541	91541					0.0742322472875685
VATQGPLAN	9	Unmodified	_VATQGPLAN_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;ENST00000460731.5_1_7:77166863-77213036:+|nuORF	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.7560119628906	2	435.737617	869.460681	0.27126	0.0001182	3.3785	0.0014721	3.6497	0.0015903	435.7393690277892	63.86	0.17838	63.609	63.48	63.659	-0.25141					6	4	2	0	0	0	0.024477	1	7459	7459		27.882	3.6795	1	117760			82457	4268	57429	57523	91542	91542					0.020729253463287023
VATSLLLLL	9	Unmodified	_VATSLLLLL_					0	0	0		ENSG00000161558|ENST00000293261|TMEM143;nc|ENSG00000161558|Q96AN5-2|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.8150329589844	2	471.815336	941.616119	1.5842	0.00074745	-1.1733	-0.00055359	0.41089	0.00019386	471.8145968420477	107.27	0.41655	107.27	107.05	107.47	0					20	9	3	0	0	0	0.64155	1	13779	13779		50.025	7.5501	1	290420			82458	6880	57430	57524	91543	91543					0.14297576147907876
VATSLLLLL	9	Unmodified	_VATSLLLLL_					0	0	0		ENSG00000161558|ENST00000293261|TMEM143;nc|ENSG00000161558|Q96AN5-2|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.81427001953125	2	471.815336	941.616119	0.52863	0.00024941	-0.35995	-0.00016983	0.16868	7.9584E-05	471.81502989862935	107.24	0.37688	107.23	107.06	107.44	-0.0034866					18	12	2	0	0	0	0.64155	1	13725	13725		50.025	2.1089	1	182260			82459	6880	57430	57524	91544	91544					0.14297576147907876
VATSLLLLL	9	Unmodified	_VATSLLLLL_					0	0	0		ENSG00000161558|ENST00000293261|TMEM143;nc|ENSG00000161558|Q96AN5-2|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	ENSG00000161558|ENST00000293261|TMEM143	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.815336	941.616119	0.49266	0.00023244	-0.021928	-1.0346E-05	0.47073	0.0002221	471.8151297317129	107.35	0.28773	107.35	107.18	107.47	0.0018311	0.067356	0.00059967	NaN	50.025	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77739			82460	6880	57430	57524							0.14297576147907876
VATSPMLIVF	10	Oxidation (M)	_VATSPM(Oxidation (M))LIVF_		VATSPM(1)LIVF		VATSPM(59)LIVF	0	0	1		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3035278320312	2	547.301736	1092.58892	-0.014614	-7.9982E-06	3.6118	0.0019767	3.5971	0.0019687	547.3036205754988	37.252	1.0608	37.059	36.735	37.796	-0.193					68	27	4	0	0	0	0.82838	1	3006	3006		58.782	8.7574	1	4318700			82461	3842	57431	57525	91545	91545		149			0.0463272454521757
VATVSEKSRI	10	Unmodified	_VATVSEKSRI_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3164672851562	2	545.316763	1088.61897	-0.23183	-0.00012642	0.0239	1.3033E-05	-0.20793	-0.00011339	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	1.0074	3	11412	11169;11265;11412		45.022	9.4039	1	11601000			82462	4458	57432	57526	91546;91547;91548	91548					0.07820799534783873
VATVSEKSRI	10	Unmodified	_VATVSEKSRI_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3167724609375	2	545.316763	1088.61897	-0.95669	-0.0005217	0.92924	0.00050673	-0.027442	-1.4965E-05	545.3171411063826	89.124	3.4609	88.961	88.181	91.641	-0.1626					295	82	5	0	0	0	1.1286	1	10837	10837		25.574	1.0549	1	15621000			82463	4458	57432	57526	91549	91549					0.07820799534783873
VATVSEKSRI	10	Unmodified	_VATVSEKSRI_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.316650390625	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0447	2	11019	10827;11019		40.058	2.4328	1	17400000			82464	4458	57432	57526	91550;91551	91551					0.07820799534783873
VATYRALLE	9	Unmodified	_VATYRALLE_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM;nc|ENSG00000182253|O15061-3|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2974243164062	2	518.295299	1034.57605	-0.78256	-0.0004056	4.4189	0.0022903	3.6364	0.0018847	518.2976765003833	102.67	3.4549	102.67	101.08	104.53	0					224	81	6	0	0	0	0.4752	1	13251	13251		60.972	2.19	1	63214000			82465	9117	57433	57527	91552	91552					0.06014029477319127
VAVALKQV	8	Unmodified	_VAVALKQV_					0	0	0		ENST00000554467.5_1_12:57626939-57627538:+|nuORF	ENST00000554467.5_1_12:57626939-57627538:+|nuORF	ENST00000554467.5_1_12:57626939-57627538:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2408142089844	2	414.271096	826.527639	-0.54186	-0.00022448	0.09991	4.139E-05	-0.44195	-0.00018309	414.2709272052084	30.517	0.70825	30.592	30.337	31.045	0.074314					19	16	2	0	0	0	0.027866	1	1946	1946		14.664	0	1	96028			82466	16657	57434	57528	91553	91553					0.10743580628081872
VAVALKQV	8	Unmodified	_VAVALKQV_					0	0	0		ENST00000554467.5_1_12:57626939-57627538:+|nuORF	ENST00000554467.5_1_12:57626939-57627538:+|nuORF	ENST00000554467.5_1_12:57626939-57627538:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	414.271096	826.527639	-0.20673	-8.5644E-05	-2.5631	-0.0010618	-2.7698	-0.0011475	414.2699241376852	30.784	1.0823	30.784	30.467	31.549	0	0.083245	-0.00032564	NaN	14.664	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215560			82467	16657	57434	57528							0.10743580628081872
VAVALKQV	8	Unmodified	_VAVALKQV_					0	0	0		ENST00000554467.5_1_12:57626939-57627538:+|nuORF	ENST00000554467.5_1_12:57626939-57627538:+|nuORF	ENST00000554467.5_1_12:57626939-57627538:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	414.271096	826.527639	0.0023139	9.5856E-07	-2.5741	-0.0010664	-2.5718	-0.0010654	414.2698306856971	30.718	1.0064	30.727	30.414	31.42	0.0086708	0.025962	-0.00033479	NaN	14.664	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224460			82468	16657	57434	57528							0.10743580628081872
VAVAQTQATQL	11	Unmodified	_VAVAQTQATQL_					0	0	0		WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.316162109375	2	565.31422	1128.61389	-0.55768	-0.00031526	4.113	0.0023251	3.5553	0.0020099	565.3164309945279	95.114	1.291	95.114	94.573	95.864	0					78	29	4	0	0	0	0.51994	1	12123	12123		75.043	0.78827	1	2251100			82469	38155	57435	57529	91554	91554					0.05472495672142941
VAVAQTQATQL	11	Unmodified	_VAVAQTQATQL_					0	0	0		WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.3162841796875	2	565.31422	1128.61389	-0.15064	-8.5161E-05	3.7028	0.0020932	3.5521	0.0020081	565.3162646410173	95	1.208	95.004	94.564	95.772	0.0033722					76	27	4	0	0	0	0.51994	1	12064	12064		75.043	0.78827	1	2159100			82470	38155	57435	57529	91555	91555					0.05472495672142941
VAVAQTQATQL	11	Unmodified	_VAVAQTQATQL_					0	0	0		WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	WNK1|p.P1061L|1|0.18|ENSG00000060237|chr12:881762-881762|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.3164672851562	2	565.31422	1128.61389	-0.51774	-0.00029268	4.0954	0.0023152	3.5777	0.0020225	565.3164586892149	95.11	1.3372	95.114	94.617	95.955	0.0041199					77	30	4	0	0	0	0.51994	1	12048	12048		75.043	0	1	2113100			82471	38155	57435	57529	91556	91556					0.05472495672142941
VAVEPLLAGL	10	Unmodified	_VAVEPLLAGL_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285;ENSG00000161031|ENST00000340880|PGLYRP2;nc|ENSG00000161031|Q96PD5-2|PGLYRP2	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.30230712890625	2	491.302593	980.590633	-0.05885	-2.8913E-05	0.080629	3.9613E-05	0.021778	1.07E-05	491.3025230644942	95.459	0.89596	95.459	95.179	96.075	0					62	20	4	0	0	0	1.0665	1	12150	12150		37.159	0	1	1437100		+	82472	484	57436	57530	91557	91557					0.09956101625471092
VAVETTTPK	9	Unmodified	_VAVETTTPK_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.2819519042969	2	473.266207	944.517862	-0.63456	-0.00030031	0.24999	0.00011831	-0.38456	-0.000182	473.2661143867496	65.266	0.9417	65.014	64.743	65.685	-0.25112					47	22	3	0	0	0	0.024205	1	7483	7483		44.117	0	1	477510			82473	866	57437	57531	91558	91558					0.043383478320379254
VAVFLLVSL	9	Unmodified	_VAVFLLVSL_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	480.2875671386719	2	480.810054	959.605554	-0.69267	-0.00033304	0.9678	0.00046533	0.27513	0.00013229	480.8103364461325	66.431	0.65591	66.207	65.783	66.439	-0.22374					38	16	3	0	0	0	0.024325	1	7576	7576		40.573	1.7665	1	344160	+		82474	22525	57438	57532	91559	91559					0.12413593493465669
VAVFLLVSL	9	Unmodified	_VAVFLLVSL_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.28741455078125	2	480.810054	959.605554	-0.19108	-9.1875E-05	0.18116	8.7106E-05	-0.0099186	-4.769E-06	480.8099828605165	66.484	0.61055	66.239	65.812	66.422	-0.24517					38	15	3	0	0	0	0.024325	1	7564	7564		50.025	11.218	1	332800	+		82475	22525	57438	57532	91560	91560					0.12413593493465669
VAVGVINVGL	10	Unmodified	_VAVGVINVGL_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.78265380859375	2	470.794935	939.575317	-0.76131	-0.00035842	-0.42909	-0.00020201	-1.1904	-0.00056043	470.79443761062305	46.737	0.46968	46.543	46.345	46.814	-0.19387					21	13	2	0	0	0	0.03519	1	4495	4495		55.504	0	1	627480	+		82476	20683	57439	57533	91561	91561					0.10311234828270699
VAVKVQHP	8	Unmodified	_VAVKVQHP_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2666015625	2	439.266345	876.518136	-0.47805	-0.00020999	0.71342	0.00031338	0.23537	0.00010339	439.26654545883497	43.416	2.7354	43.277	42.521	45.256	-0.13929					191	77	3	0	0	0	0.96719	1	4072	4072		42.474	0	1	3268000			82477	1265	57440	57534	91562	91562					0.07493812342568162
VAVLELLQV	9	Unmodified	_VAVLELLQV_					0	0	0		ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2873840332031	2	492.310418	982.606283	0.21773	0.00010719	-0.32864	-0.00016179	-0.11091	-5.4601E-05	492.31000828534377	68.154	0.97945	68.173	67.707	68.686	0.018913					53	25	4	0	0	0	0.024477	1	8036	8036		20.947	0	1	494000			82478	16902	57441	57535	91563	91563					0.11428388142519452
VAVLIFCI	8	Unmodified	_VAVLIFCI_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2660827636719	2	439.264425	876.514297	0.40112	0.0001762	4.2142	0.0018512	4.6153	0.0020274	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	0.8525	1	4058	4058		54.895	6.979	1	3207400	+		82479	25096	57442	57536	91564	91564					0.07110006524476375
VAVLKQKL	8	Unmodified	_VAVLKQKL_					0	0	0		ENST00000510921.5_1_5:86688679-86700752:-|nuORF;ENSG00000134480|ENST00000256897|CCNH	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2873229980469	2	449.807845	897.601138	0.48848	0.00021972	-0.67203	-0.00030229	-0.18355	-8.2563E-05	449.80760386186654	37.172	0.45509	36.979	36.774	37.229	-0.193					17	11	2	0	0	0	0.027866	1	2956	2956		39.021	0	1	178830			82480	4800	57443	57537	91565	91565					0.14824129070552772
VAVLWARA	8	Unmodified	_VAVLWARA_					0	0	0		ENST00000451963.1_2_7:99816827-99817049:+|nuORF;ENST00000317271.2_1_7:99816887-99817430:+|nuORF	ENST00000451963.1_2_7:99816827-99817049:+|nuORF	ENST00000451963.1_2_7:99816827-99817049:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	444.2509765625	2	443.268887	884.523222	-0.55397	-0.00024556	-4.0093	-0.0017772	-4.5633	-0.0020228	443.2670353906837	29.431	1.1385	29.509	29.202	30.341	0.078344					83	27	4	0	0	0	0.027866	1	1714	1714		15.636	14.639	1	3748000			82481	12161	57444	57538	91566	91566					0.07634116205178998
VAVRVRAPP	9	Unmodified	_VAVRVRAPP_					0	0	0			REV__ENSG00000079616|ENST00000160827|KIF22	REV__ENSG00000079616|ENST00000160827|KIF22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7663879394531	2	482.806168	963.597784	-0.010456	-5.0484E-06	-0.41173	-0.00019879	-0.42219	-0.00020384	482.8058695813512	47.305	0.49704	47.305	46.967	47.464	0					24	13	3	0	0	0	0.024541	1	4718	4718		13.775	0	1	278300	+		82482	20641	57445	57539	91567	91567					0.11452879016553652
VAVTSVYI	8	Unmodified	_VAVTSVYI_					0	0	0			REV__ENSG00000132017|ENST00000254337|DCAF15	REV__ENSG00000132017|ENST00000254337|DCAF15	MSMS	OPSCC_39_ClassI_Rep-2	2	426.2469787597656	2	426.247286	850.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.09	1	103.1	102.6	103.6	0.0054245								0	0	0	0.88695	1	13186	13186		28.254	1.4582	1		+		82483	23252	57446	57540	91568	91568					0.04879881637236849
VAVVTLFIIS	10	Unmodified	_VAVVTLFIIS_					0	0	0			REV__ENSG00000182782|ENST00000328880|HCAR2	REV__ENSG00000182782|ENST00000328880|HCAR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.2973022460938	2	531.333893	1060.65323	-0.15194	-8.073E-05	-0.56217	-0.0002987	-0.71411	-0.00037943	531.3339419185392	65.594	0.15198	65.594	65.529	65.681	0					5	3	2	0	0	0	0.03519	1	7787	7787		20.947	0	1	74754	+		82484	27507	57447	57541	91569	91569					0.12533247693681915
VAVYCSFIS	9	Unmodified	_VAVYCSFIS_					0	0	0		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.25042724609375	2	494.744053	987.473554	-0.21983	-0.00010876	3.3994	0.0016818	3.1796	0.0015731	494.7456262752347	45.014	0.58959	45.014	44.657	45.246	0					33	16	3	0	0	0	0.023775	1	4324	4324		57.811	2.3071	1	1829800			82485	2695	57448	57542	91570	91570					-0.02068379585796265
VAVYCSFIS	9	Unmodified	_VAVYCSFIS_					0	0	0		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.744053	987.473554	-0.099703	-4.9328E-05	3.5085	0.0017358	3.4088	0.0016865	494.745693671336	45.338	0.49906	45.086	44.826	45.325	-0.25252	0.038821	-7.5212E-05	NaN	57.811	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1028300			82486	2695	57448	57542							-0.02068379585796265
VAVYCSFIS	9	Unmodified	_VAVYCSFIS_					0	0	0		ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	ENSG00000105583|ENST00000596731|WDR83OS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.744053	987.473554	-0.40354	-0.00019965	4.0026	0.0019803	3.5991	0.0017806	494.7457026106582	45.296	0.56237	45.085	44.754	45.316	-0.21109	0.037987	0.00041369	NaN	57.811	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1059000			82487	2695	57448	57542							-0.02068379585796265
VAVYRYGL	8	Unmodified	_VAVYRYGL_					0	0	0			REV__ENSG00000139572|ENST00000267015|GPR84	REV__ENSG00000139572|ENST00000267015|GPR84	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	470.78265380859375	2	470.766178	939.517802	-0.74573	-0.00035107	2.1291	0.0010023	1.3833	0.00065123	470.7645108472565	46.759	0.5771	46.565	46.202	46.779	-0.19387					25	16	3	0	0	0	0.027866	1	4495	4495		44.531	0	1	212480	+		82488	23948	57449	57543	91571	91571					0.04562392622710831
VAWDKPGL	8	Unmodified	_VAWDKPGL_					0	0	0		ENST00000426034.5_1_3:50596907-50597087:-|nuORF	ENST00000426034.5_1_3:50596907-50597087:-|nuORF	ENST00000426034.5_1_3:50596907-50597087:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.24322509765625	2	443.245078	884.475603	-1.0212	-0.00045263	-3.7478	-0.0016612	-4.769	-0.0021138	443.2434356810486	38.266	1.6567	38.266	37.803	39.459	0					88	46	3	0	0	0	0.59392	1	3193	3193		76.847	5.5509	1	23284000			82489	14078	57450	57544	91572	91572					0.028744172143206015
VAWDKPGL	8	Unmodified	_VAWDKPGL_					0	0	0		ENST00000426034.5_1_3:50596907-50597087:-|nuORF	ENST00000426034.5_1_3:50596907-50597087:-|nuORF	ENST00000426034.5_1_3:50596907-50597087:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2431335449219	2	443.245078	884.475603	-0.6829	-0.00030269	-4.1621	-0.0018448	-4.845	-0.0021475	443.2432481723972	38.172	1.4344	38.089	37.636	39.071	-0.082516					105	39	4	0	0	0	0.68535	1	3163	3163		68.485	5.5063	1	21001000			82490	14078	57450	57544	91573	91573					0.028744172143206015
VAWDKPGL	8	Unmodified	_VAWDKPGL_					0	0	0		ENST00000426034.5_1_3:50596907-50597087:-|nuORF	ENST00000426034.5_1_3:50596907-50597087:-|nuORF	ENST00000426034.5_1_3:50596907-50597087:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	443.2431335449219	2	443.245078	884.475603	-1.5616	-0.00069217	-3.2024	-0.0014195	-4.764	-0.0021116	443.2436552231153	38.354	1.6453	38.381	37.884	39.529	0.027275					110	45	4	0	0	0	0.46709	2	3160	3149;3160		88.643	8.5853	1	22628000			82491	14078	57450	57544	91574;91575	91575					0.028744172143206015
VAWHCMEPAR	10	Unmodified	_VAWHCMEPAR_					0	0	0		ENST00000527372.6_2_17:27401475-27401541:-|nuORF	ENST00000527372.6_2_17:27401475-27401541:-|nuORF	ENST00000527372.6_2_17:27401475-27401541:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.52392578125	3	400.519799	1198.53757	2.2818	0.00091389	2.9719	0.0011903	5.2536	0.0021042	400.520907303308	16.182	0.18414	16.028	15.938	16.122	-0.15376					11	6	2	0	0	0	1.1031	1	49	49		12.207	0	1	19426			82492	16151	57451	57545	91576	91576					-0.053759227005002685
VAWLVVSVEI	10	Unmodified	_VAWLVVSVEI_					0	0	0			REV__ENSG00000167769|ENST00000301452|ACER1	REV__ENSG00000167769|ENST00000301452|ACER1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	557.8265991210938	2	557.828975	1113.6434	-0.3453	-0.00019262	0.2302	0.00012841	-0.1151	-6.4207E-05	557.8289070961246	102.14	0.50815	102.15	101.82	102.33	0.0073471					17	11	2	0	0	0	0.84306	1	13045	13045		57.811	15.415	1	115200	+		82493	26193	57452	57546	91577	91577					0.09112059688277441
VAWLVVSVEI	10	Unmodified	_VAWLVVSVEI_					0	0	0			REV__ENSG00000167769|ENST00000301452|ACER1	REV__ENSG00000167769|ENST00000301452|ACER1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.828975	1113.6434	-0.24784	-0.00013825	-0.3506	-0.00019558	-0.59844	-0.00033383	557.8285253180901	102.22	0.6637	102.22	101.86	102.53	0	0.070055	0.00018243	NaN	57.811	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90742	+		82494	26193	57452	57546							0.09112059688277441
VAWLVVSVEI	10	Unmodified	_VAWLVVSVEI_					0	0	0			REV__ENSG00000167769|ENST00000301452|ACER1	REV__ENSG00000167769|ENST00000301452|ACER1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	557.828975	1113.6434	-0.3453	-0.00019262	0.2302	0.00012841	-0.1151	-6.4207E-05	557.8289070961246	102.14	0.50815	102.15	101.82	102.33	0.0073471	0.0057647	0.0008304	NaN	57.811	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115200	+		82495	26193	57452	57546							0.09112059688277441
VAWLVVSVEI	10	Unmodified	_VAWLVVSVEI_					0	0	0			REV__ENSG00000167769|ENST00000301452|ACER1	REV__ENSG00000167769|ENST00000301452|ACER1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.828975	1113.6434	0.37502	0.0002092	-0.92616	-0.00051664	-0.55114	-0.00030744	557.8283805052102	102.18	0.74809	102.17	101.89	102.63	-0.0054474	0.026531	-0.0004597	NaN	57.811	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106040	+		82496	26193	57452	57546							0.09112059688277441
VAWLVVSVEI	10	Unmodified	_VAWLVVSVEI_					0	0	0			REV__ENSG00000167769|ENST00000301452|ACER1	REV__ENSG00000167769|ENST00000301452|ACER1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.828975	1113.6434	0.028975	1.6163E-05	-2.4322	-0.0013568	-2.4032	-0.0013406	557.8286065123818	102.21	0.31761	102.04	101.89	102.2	-0.17178	-0.10235	-0.0021399	NaN	57.811	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22261	+		82497	26193	57452	57546							0.09112059688277441
VAYPQTQQL	9	Unmodified	_VAYPQTQQL_					0	0	0			REV__nc|ENSG00000158161|Q99504-4|EYA3	REV__nc|ENSG00000158161|Q99504-4|EYA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3082885742188	2	524.277106	1046.53966	0.22237	0.00011658	-3.9777	-0.0020854	-3.7553	-0.0019688	524.2743887741924	71.625	1.1563	71.635	70.976	72.132	0.010735					49	30	3	0	0	0	0.022411	1	8589	8589		101.6	29.723	1	919930	+		82498	25179	57453	57547	91578	91578					0.01825152580613576
VAYQKDRRW	9	Unmodified	_VAYQKDRRW_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	407.8875732421875	3	407.887756	1220.64144	0.13412	5.4704E-05	-0.17861	-7.2853E-05	-0.044495	-1.8149E-05	407.88761810853975	27.552	0.89105	27.31	26.954	27.845	-0.24217					45	20	3	0	0	0	0.77768	1	1531	1531		40.778	2.0246	1	980190			82499	3327	57454	57548	91579	91579					0.03994443723013319
VAYQKDRRW	9	Unmodified	_VAYQKDRRW_					0	0	0		ENSG00000113810|ENST00000357388|SMC4;SMC4|p.R1131Gfs*11|1|0.36|ENSG00000113810|chr3:160432374-160432374|A/-|frameshift_variant;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	ENSG00000113810|ENST00000357388|SMC4	ENSG00000113810|ENST00000357388|SMC4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	407.887756	1220.64144	-0.18189	-7.4192E-05	0.37067	0.00015119	0.18877	7.6999E-05	407.88778044280417	27.439	0.8763	27.271	26.931	27.808	-0.16816	-0.01944	0.00051697	NaN	40.778	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	837590			82500	3327	57454	57548							0.03994443723013319
VAYSVLLLSF	10	Unmodified	_VAYSVLLLSF_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	556.3250732421875	2	556.323525	1110.6325	2.616	0.0014554	1.2253	0.00068165	3.8413	0.002137	556.3241015454903	19.513	0.58402	19.579	19.291	19.875	0.066195					24	11	3	0	0	0	1.1217	1	397	397		21.96	2.5999	1	144410	+		82501	27437	57455	57549	91580	91580					0.0816065731398794
VCDVNGFSFV	10	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))DVNGFSFV_	VC(1)DVNGFSFV		VC(75)DVNGFSFV		0	1	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	572.2620239257812	2	572.260599	1142.50665	-0.25021	-0.00014319	3.1451	0.0017998	2.8949	0.0016567	572.262299854047	43.113	1.0838	42.974	42.667	43.751	-0.13929					66	29	4	0	0	0	0.61732	1	3995	3995		75.043	14.925	1	4738900			82502	7862;5831	57456	57550	91581	91581	75				-0.05890797533743353
VCDVNGFSFV	10	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))DVNGFSFV_	VC(1)DVNGFSFV		VC(100)DVNGFSFV		0	1	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.2630615234375	2	572.260599	1142.50665	-0.032091	-1.8364E-05	3.0695	0.0017566	3.0374	0.0017382	572.2620928900733	43.109	1.4607	42.996	42.735	44.195	-0.11253					119	39	5	0	0	0	0.37509	4	3924	3913;3924;3935;3962		101.25	16.346	1	13018000			82503	7862;5831	57456	57550	91582;91583;91584;91585	91583	75				-0.05890797533743353
VCDVNGFSFV	10	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))DVNGFSFV_	VC(1)DVNGFSFV		VC(100)DVNGFSFV		0	1	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2622680664062	2	572.260599	1142.50665	-0.42736	-0.00024456	3.2047	0.0018339	2.7773	0.0015894	572.2622304881089	43.285	1.4679	43.047	42.759	44.227	-0.23737					103	39	6	0	0	0	0.37509	2	3952	3952;3964		101.25	19.012	1	12537000			82504	7862;5831	57456	57550	91586;91587	91586	75				-0.05890797533743353
VCDVNGFSFV	10	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))DVNGFSFV_	VC(1)DVNGFSFV		VC(110)DVNGFSFV		0	1	0		nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000145725|O43314-2|PPIP5K2	nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2620849609375	2	572.260599	1142.50665	-0.81838	-0.00046833	3.6763	0.0021038	2.8579	0.0016354	572.2623985938371	43.323	1.3085	43.097	42.793	44.101	-0.22597					109	35	6	0	0	0	0.26927	2	3957	3945;3957		112.41	24.657	1	12310000			82505	7862;5831	57456	57550	91588;91589	91589	75				-0.05890797533743353
VCELSRLESC	10	Unmodified	_VCELSRLESC_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	570.3319091796875	2	569.765191	1137.51583	0.36455	0.00020771	-2.735	-0.0015583	-2.3704	-0.0013506	569.7629534531942	47.283	0.81129	47.13	46.698	47.51	-0.15301					46	21	3	0	0	0	0.03519	1	4658	4658		35.618	18.253	1	700510	+		82506	36664	57457	57551	91590	91590					-0.04742772239728765
VCFIGRPW	8	Unmodified	_VCFIGRPW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27473425-27473950:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1;ENST00000564747.1_1_16:27473425-27473950:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2377014160156	2	489.254923	976.495293	-0.95537	-0.00046742	3.0679	0.001501	2.1125	0.0010336	489.256013054985	35.791	0.74956	35.586	35.306	36.056	-0.20518					31	20	3	0	0	0	0.027866	1	2701	2701		69.093	15.742	1	378300			82507	1604;16902	57458	57552	91591	91591					0.006104699534375868
VCFIGRPW	8	Unmodified	_VCFIGRPW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27473425-27473950:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1;ENST00000564747.1_1_16:27473425-27473950:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.254923	976.495293	-0.11118	-5.4393E-05	2.5502	0.0012477	2.439	0.0011933	489.25588127255276	35.729	0.78089	35.517	35.274	36.054	-0.21246	0.0047582	-7.6069E-05	NaN	69.093	32	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494630			82508	1604;16902	57458	57552							0.006104699534375868
VCFIGRPW	8	Unmodified	_VCFIGRPW_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27473425-27473950:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1;ENST00000564747.1_1_16:27473425-27473950:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.254923	976.495293	0.042584	2.0835E-05	2.4602	0.0012037	2.5028	0.0012245	489.25574739592656	35.619	0.71419	35.432	35.14	35.854	-0.18675	-0.079289	-0.00016412	NaN	69.093	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611830			82509	1604;16902	57458	57552							0.006104699534375868
VCFLLGRRCL	10	Unmodified	_VCFLLGRRCL_					0	0	0			REV__ENST00000399976.6_1_21:30396952-30400215:+|nuORF	REV__ENST00000399976.6_1_21:30396952-30400215:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	591.3010864257812	2	590.328096	1178.64164	-0.77289	-0.00045626	3.5767	0.0021114	2.8038	0.0016552	590.3300935975409	71.26	0.54293	71.003	70.784	71.327	-0.25712					19	12	2	0	0	0	0.03519	1	8293	8293		10.866	0	1	181740	+		82510	31845	57459	57553	91592	91592					0.05946404127053029
VCGHLILEKIL	11	Unmodified	_VCGHLILEKIL_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.2503662109375	3	413.249415	1236.72641	1.0715	0.0004428	0.56229	0.00023237	1.6338	0.00067516	413.5843367164303	100.09	0.65361	100.09	99.746	100.4	0					23	16	2	0	0	0	1.0614	1	12820	12820		19.263	0	1	329900			82511	4349	57460	57554	91593	91593					0.1175205314464165
VCGHLLQDP	9	Unmodified	_VCGHLLQDP_					0	0	0		ENSG00000174579|ENST00000309993|MSL2	ENSG00000174579|ENST00000309993|MSL2	ENSG00000174579|ENST00000309993|MSL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.7952880859375	2	491.244752	980.474951	-0.49158	-0.00024149	0.95993	0.00047156	0.46835	0.00023007	491.2451185265089	48.71	0.31808	48.557	48.364	48.682	-0.15277					12	8	2	0	0	0	0.024294	1	4954	4954		29.15	9.7896	1	108160			82512	8483	57461	57555	91594	91594					-0.016067454970425388
VCGIALAVLL	10	Unmodified	_VCGIALAVLL_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.8182067871094	2	486.301539	970.588524	0.37095	0.00018039	-4.4197	-0.0021493	-4.0488	-0.0019689	486.29940499733624	65.632	0.63937	65.632	65.426	66.065	0					37	16	3	0	0	0	0.03519	1	7845	7845		35.201	12.158	1	684920	+		82513	22118	57462	57556	91595	91595					0.10205349616023796
VCGLALVISL	10	Unmodified	_VCGLALVISL_					0	0	0			REV__ENSG00000157005|ENST00000287641|SST	REV__ENSG00000157005|ENST00000287641|SST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3004455566406	2	494.298996	986.583439	0.003029	1.4972E-06	3.2604	0.0016116	3.2634	0.0016131	494.30071556705917	96.134	3.0066	96.134	95.392	98.398	0					219	69	6	0	0	0	1.0781	1	12377	12377		35.618	3.6634	1	42897000	+		82514	25105	57463	57557	91596	91596					0.08961045753392227
VCGTYLFKV	9	Unmodified	_VCGTYLFKV_					0	0	0			REV__ENST00000356986.7_1_12:9162089-9162140:+|nuORF	REV__ENST00000356986.7_1_12:9162089-9162140:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.7740478515625	2	515.275521	1028.53649	0.17725	9.1334E-05	-2.1907	-0.0011288	-2.0135	-0.0010375	515.2751603310174	68.802	1.1451	68.571	68.195	69.34	-0.23048					55	27	3	0	0	0	0.4752	1	7975	7975		60.972	2.19	1	1369700	+		82515	30810	57464	57558	91597	91597					0.023361862022284186
VCHDPKLPY	9	Unmodified	_VCHDPKLPY_					0	0	0		ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2	ENSG00000163513|ENST00000295754|TGFBR2	ENSG00000163513|ENST00000295754|TGFBR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2344360351562	2	536.268227	1070.5219	0.62239	0.00033377	-3.6218	-0.0019423	-2.9994	-0.0016085	536.2660532363011	68.004	1.1513	67.749	67.279	68.431	-0.25516					70	27	5	0	0	0	0.024262	1	7792	7792		47.916	0	1	987660			82516	7092	57465	57559	91598	91598					-0.010538859458847583
VCIFFTDLS	9	Unmodified	_VCIFFTDLS_					0	0	0		ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	ENST00000301785.5_1_11:62482034-62482370:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2794799804688	2	522.757161	1043.49977	-0.39528	-0.00020663	2.6336	0.0013767	2.2383	0.0011701	522.7554872174421	59.991	0.47586	59.791	59.577	60.053	-0.20016					33	12	3	0	0	0	0.024412	1	6832	6832		31.955	0	1	200750			82517	11938	57466	57560	91599	91599					-0.02024110414322422
VCIHLTDEM	9	Unmodified	_VCIHLTDEM_					0	0	0		ENST00000457356.8_1_8:72965957-72966179:+|nuORF	ENST00000457356.8_1_8:72965957-72966179:+|nuORF	ENST00000457356.8_1_8:72965957-72966179:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2964477539062	2	530.743728	1059.4729	-0.2531	-0.00013433	-3.9235	-0.0020824	-4.1767	-0.0022167	531.2425578541638	106.34	0.53592	106.33	106.14	106.67	-0.0013199					22	16	2	0	0	0	0.024487	1	13596	13596		31.955	16.313	1	171650			82518	14609	57467	57561	91600	91600					-0.0544554229716141
VCIMALLGCF	10	Unmodified	_VCIMALLGCF_					0	0	0		ENSG00000171942|ENST00000305899|OR10H2	ENSG00000171942|ENST00000305899|OR10H2	ENSG00000171942|ENST00000305899|OR10H2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2384033203125	2	535.265784	1068.51702	-0.44713	-0.00023933	1.6088	0.00086111	1.1616	0.00062178	535.2645494383077	61.018	0.19347	60.812	60.695	60.889	-0.20599					9	4	3	0	0	0	0.03519	1	6801	6801		35.201	2.3883	1	59358			82519	8221	57468	57562	91601	91601					-0.014502294045314557
VCIMALLGCF	10	Unmodified	_VCIMALLGCF_					0	0	0		ENSG00000171942|ENST00000305899|OR10H2	ENSG00000171942|ENST00000305899|OR10H2	ENSG00000171942|ENST00000305899|OR10H2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	535.265784	1068.51702	-1.3019	-0.00069687	1.4726	0.00078822	0.17067	9.1356E-05	535.2662351905782	61.07	0.20254	60.894	60.753	60.955	-0.1761	0.040728	-8.7074E-05	NaN	35.201	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63283			82520	8221	57468	57562							-0.014502294045314557
VCINDYLDV	9	Unmodified	_VCINDYLDV_					0	0	0		ENSG00000184349|ENST00000333274|EFNA5;ENST00000504941.1_1_5:106762801-107006392:-|nuORF	ENSG00000184349|ENST00000333274|EFNA5	ENSG00000184349|ENST00000333274|EFNA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2616577148438	2	527.2497	1052.48485	0.10692	5.6375E-05	4.0785	0.0021504	4.1854	0.0022068	527.251399323791	77.418	1.1764	77.156	76.771	77.948	-0.26202					61	28	3	0	0	0	0.50848	1	9172	9172		58.782	7.4465	1	3102000			82521	9329	57469	57563	91602	91602					-0.039296022823236854
VCIPHLLPGL	10	Unmodified	_VCIPHLLPGL_					0	0	0			REV__ENST00000376514.6_2_19:54969867-54970041:+|nuORF	REV__ENST00000376514.6_2_19:54969867-54970041:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.80859375	2	531.312438	1060.61032	-0.80217	-0.0004262	-2.1378	-0.0011358	-2.94	-0.001562	531.3114245459103	103.81	0.70023	103.68	103.13	103.83	-0.12927					22	16	2	0	0	0	0.03519	1	12909	12909		35.201	15.841	1	160010	+		82522	31358	57470	57564	91603	91603					0.08244154364570022
VCIVLLNEV	9	Unmodified	_VCIVLLNEV_					0	0	0			REV__ENSG00000166856|ENST00000300098|GPR182	REV__ENSG00000166856|ENST00000300098|GPR182	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2895812988281	2	501.288628	1000.5627	-0.41084	-0.00020595	3.8495	0.0019297	3.4386	0.0017237	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	0.72875	1	10414	10414		44.117	0	1	2038300	+		82523	26066	57471	57565	91604	91604					0.062444553737236674
VCKLTVEDL	9	Unmodified	_VCKLTVEDL_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.2756042480469	2	510.275718	1018.53688	0.53585	0.00027343	-3.6381	-0.0018564	-3.1023	-0.001583	510.2735587206571	70.615	0.74947	70.615	70.316	71.065	0					45	17	4	0	0	0	0.45795	1	8534	8534		62.107	3.3255	1	1236700	+		82524	25943	57472	57566	91605	91605					0.028355611314509588
VCKNTLRL	8	Unmodified	_VCKNTLRL_					0	0	0		EML4-MTA3|1|fusion;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	EML4-MTA3|1|fusion;ENSG00000057935|ENST00000405094|MTA3	EML4-MTA3|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.7791442871094	2	473.778762	945.542971	0.27668	0.00013108	-2.0152	-0.00095474	-1.7385	-0.00082366	473.7783942020908	24.129	2.5601	24.129	23.441	26.001	0					118	59	3	0	0	0	0.77775	1	1085	1085		60.972	0.67798	1	5959600			82525	707;1208	57473	57567	91606	91606					0.06802124153637124
VCKSMSTVI	9	Unmodified	_VCKSMSTVI_					0	0	0		ATP2B2|p.R606C|1|0.55|ENSG00000157087|chr3:10359967-10359967|G/A|missense_variant	ATP2B2|p.R606C|1|0.55|ENSG00000157087|chr3:10359967-10359967|G/A|missense_variant	ATP2B2|p.R606C|1|0.55|ENSG00000157087|chr3:10359967-10359967|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.2496337890625	2	484.251188	966.487824	-1.136	-0.00055009	-2.156	-0.001044	-3.2919	-0.0015941	484.2499100919961	80.206	1.2622	80.054	79.377	80.639	-0.15168					76	29	4	0	0	0	0.56934	1	9912	9912		54.776	2.4771	1	1881600			82526	155	57474	57568	91607	91607					0.003239495708612594
VCLAAALLTV	10	Unmodified	_VCLAAALLTV_					0	0	0		ENST00000537237.5_1_12:110017641-110029070:+|nuORF;ENSG00000110921|ENST00000228510|MVK	ENST00000537237.5_1_12:110017641-110029070:+|nuORF	ENST00000537237.5_1_12:110017641-110029070:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2894592285156	2	487.291171	972.567789	-0.11103	-5.4103E-05	-3.3274	-0.0016214	-3.4384	-0.0016755	487.2894983609172	93.257	1.2939	93.257	92.794	94.088	0					65	30	4	0	0	0	1.0142	1	11867	11867		44.117	1.6423	1	1269400			82527	3076	57475	57569	91608	91608					0.08040759236348549
VCLAWLVLL	9	Unmodified	_VCLAWLVLL_					0	0	0			REV__ENSG00000160539|ENST00000372264|PLPP7	REV__ENSG00000160539|ENST00000372264|PLPP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.290771484375	2	515.311906	1028.60926	-0.53931	-0.00027791	3.1939	0.0016459	2.6546	0.0013679	515.3134102978081	70.672	0.42371	70.685	70.347	70.77	0.012421					14	9	2	0	0	0	0.024475	1	8429	8429		21.702	0	1	251430	+		82528	25326	57476	57570	91609	91609					0.09609939995675632
VCLENKCGY	9	Unmodified	_VCLENKCGY_					0	0	0		ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.31103515625	2	514.73062	1027.44669	-0.45697	-0.00023522	0.40056	0.00020618	-0.056407	-2.9034E-05	514.7306111840637	78.773	0.54621	78.773	78.489	79.035	0					26	12	3	0	0	0	0.024495	1	9750	9750		26.693	5.746	1	254920			82529	12977	57477	57571	91610	91610					-0.06593811468610511
VCLENKCGY	9	Unmodified	_VCLENKCGY_					0	0	0		ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	514.73062	1027.44669	-0.088128	-4.5362E-05	-0.034588	-1.7803E-05	-0.12272	-6.3165E-05	514.730397958229	78.893	0.54459	78.701	78.422	78.966	-0.1921	0.028107	-7.9334E-05	NaN	19.997	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288250			82530	12977	57477	57571							-0.06593811468610511
VCLENKCGY	9	Unmodified	_VCLENKCGY_					0	0	0		ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.73062	1027.44669	-0.56163	-0.00028909	0.56004	0.00028827	-0.00159	-8.1841E-07	514.7307560226585	78.71	0.50386	78.728	78.524	79.028	0.018677	0.055778	0.00053281	NaN	19.997	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256780			82531	12977	57477	57571							-0.06593811468610511
VCLENKCGY	9	Unmodified	_VCLENKCGY_					0	0	0		ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.73062	1027.44669	0.10297	5.3002E-05	-0.28909	-0.0001488	-0.18612	-9.5801E-05	514.7304332848585	78.906	0.51399	78.652	78.384	78.898	-0.25471	-0.020921	-0.00034133	NaN	19.997	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149140			82532	12977	57477	57571							-0.06593811468610511
VCLENKCGY	9	Unmodified	_VCLENKCGY_					0	0	0		ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.73062	1027.44669	0.23587	0.00012141	-0.24615	-0.0001267	-0.010282	-5.2925E-06	514.7304039695684	78.843	0.51289	78.611	78.389	78.902	-0.23141	-0.061466	-0.00029713	NaN	19.997	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151240			82533	12977	57477	57571							-0.06593811468610511
VCLENKCGY	9	Unmodified	_VCLENKCGY_					0	0	0		ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	ENST00000370952.3_1_1:70654916-70654949:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.73062	1027.44669	0.10255	5.2786E-05	-0.07963	-4.0988E-05	0.02292	1.1798E-05	514.7303947448446	78.727	0.47536	78.571	78.34	78.815	-0.15591	-0.10156	-0.0001257	NaN	19.997	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154290			82534	12977	57477	57571							-0.06593811468610511
VCLEVLKEI	9	Unmodified	_VCLEVLKEI_					0	0	0			REV__ENST00000532469.1_1_11:65029724-65047127:+|nuORF	REV__ENST00000532469.1_1_11:65029724-65047127:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3026733398438	2	523.301736	1044.58892	0.13302	6.9608E-05	2.0601	0.001078	2.1931	0.0011476	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.6504	1	10812	10812		49.442	0	1	10615000	+		82535	19964	57478	57572	91611	91611					0.06840724545213561
VCLPLSGYL	9	Unmodified	_VCLPLSGYL_					0	0	0			REV__ENSG00000173653|ENST00000309657|RCE1	REV__ENSG00000173653|ENST00000309657|RCE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7619323730469	2	482.762246	963.50994	0.67057	0.00032373	-0.66299	-0.00032007	0.0075865	3.6625E-06	482.7617960043813	85.609	0.71635	85.459	85.03	85.747	-0.14967					41	16	3	0	0	0	0.52323	1	10380	10380		57.811	2.3071	1	521010	+		82536	26794	57479	57573	91612	91612					0.02672497310925337
VCLVLLVAN	9	Unmodified	_VCLVLLVAN_					0	0	0		nc|ENSG00000122490|Q8N2U9-3|SLC66A2;nc|ENSG00000122490|Q8N2U9-2|SLC66A2;ENSG00000122490|ENST00000397778|SLC66A2	nc|ENSG00000122490|Q8N2U9-3|SLC66A2	nc|ENSG00000122490|Q8N2U9-3|SLC66A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28790283203125	2	472.285889	942.557224	0.48131	0.00022732	3.1588	0.0014918	3.6401	0.0017192	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.97516	1	11591	11591		25.45	1.2474	1	42478000			82537	3927	57480	57574	91613	91613					0.08364776581902333
VCLVLQLTL	9	Unmodified	_VCLVLQLTL_					0	0	0			REV__ENSG00000086159|ENST00000315520|AQP6	REV__ENSG00000086159|ENST00000315520|AQP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.2895812988281	2	501.306821	1000.59909	-0.59998	-0.00030078	-3.4795	-0.0017443	-4.0795	-0.0020451	501.3047510087969	83.372	0.68492	83.372	83.138	83.823	0					32	15	3	0	0	0	0.024405	1	10414	10414		35.618	0.41757	1	221270	+		82538	20768	57481	57575	91614	91614					0.09881332270435905
VCLVLSRVS	9	Unmodified	_VCLVLSRVS_					0	0	0		ENST00000459857.5_1_22:45072965-45122509:+|nuORF	ENST00000459857.5_1_22:45072965-45122509:+|nuORF	ENST00000459857.5_1_22:45072965-45122509:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2375183105469	2	488.28642	974.558287	-0.38565	-0.00018831	-3.719	-0.0018159	-4.1046	-0.0020042	488.28459287978717	35.297	0.38816	35.085	34.766	35.154	-0.21246					16	9	3	0	0	0	0.024292	1	2669	2669		68.787	50.462	1	48492			82539	14640	57482	57576	91615	91615					0.06998990950819461
VCLVLVPLL	9	Unmodified	_VCLVLVPLL_					0	0	0			REV__ENSG00000180305|ENST00000372643|WFDC10A	REV__ENSG00000180305|ENST00000372643|WFDC10A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.816162109375	2	484.814282	967.614011	-0.18626	-9.0303E-05	3.983	0.001931	3.7967	0.0018407	484.8162082535944	66.563	0.57334	66.318	65.972	66.545	-0.24517					50	16	4	0	0	0	0.32257	1	7649	7649		72.62	21.284	1	12870000	+		82540	27330	57483	57577	91616	91616					0.12890824138423795
VCMAIDRYVA	10	Unmodified	_VCMAIDRYVA_					0	0	0		ENSG00000181017|ENST00000641377|OR56B2P;nc|ENSG00000181017|Q8NGI1|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.781982421875	2	570.780644	1139.54674	-2.0569	-0.001174	4.4217	0.0025238	2.3648	0.0013498	570.7830948125485	90.782	1.4752	90.782	90.469	91.945	0					98	34	6	0	0	0	0.50517	1	11486	11486		87.696	5.4559	1	5198400			82541	9017	57484	57578	91617	91617					-0.017455741348385345
VCMAIDRYVA	10	Unmodified	_VCMAIDRYVA_					0	0	0		ENSG00000181017|ENST00000641377|OR56B2P;nc|ENSG00000181017|Q8NGI1|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.7824096679688	2	570.780644	1139.54674	-0.26844	-0.00015322	2.5308	0.0014445	2.2623	0.0012913	570.7820424904656	90.818	1.7574	90.801	90.317	92.075	-0.016708					107	41	6	0	0	0	0.50517	3	11448	11448;11458;11471		87.696	12.653	1	5149800			82542	9017	57484	57578	91618;91619;91620	91618					-0.017455741348385345
VCPLALISPI	10	Unmodified	_VCPLALISPI_					0	0	0		ENST00000394249.7_1_15:91509410-91509812:-|nuORF	ENST00000394249.7_1_15:91509410-91509812:-|nuORF	ENST00000394249.7_1_15:91509410-91509812:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.2982788085938	2	513.306821	1024.59909	-0.87365	-0.00044845	4.1674	0.0021392	3.2938	0.0016907	513.3087709367624	34.936	0.5501	34.986	34.723	35.273	0.050255					26	14	2	0	0	0	0.03519	1	2596	2596		57.811	24.296	1	346270			82543	13483	57485	57579	91621	91621					0.08777332270460647
VCPLKAAID	9	Unmodified	_VCPLKAAID_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2789306640625	2	465.259871	928.505189	-0.26802	-0.0001247	-0.99748	-0.00046409	-1.2655	-0.00058879	465.25936874382364	50.794	0.63514	50.794	50.577	51.212	0					21	17	2	0	0	0	0.024457	1	5397	5397		37.159	3.6435	1	199220			82544	10973	57486	57580	91622	91622					0.03807613168135049
VCPLKAAID	9	Unmodified	_VCPLKAAID_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.259871	928.505189	0.41413	0.00019268	-0.0077268	-3.595E-06	0.4064	0.00018908	465.2603013193133	50.89	0.22645	50.71	50.534	50.76	-0.18071	-0.057382	0.00089953	NaN	29.15	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72052			82545	10973	57486	57580							0.03807613168135049
VCPQVAVVL	9	Unmodified	_VCPQVAVVL_					0	0	0		ENST00000462753.5_1_7:129841718-129841784:-|nuORF	ENST00000462753.5_1_7:129841718-129841784:-|nuORF	ENST00000462753.5_1_7:129841718-129841784:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2723388671875	2	464.270238	926.525924	0.56497	0.0002623	2.9535	0.0013712	3.5184	0.0016335	464.27169400340784	19.391	0.85992	19.391	19.168	20.028	0					50	17	5	0	0	0	0.80658	1	434	434		38.806	3.6541	1	7141300			82546	14718	57487	57581	91623	91623					0.05972203547821664
VCPVLLFGGGG	11	Unmodified	_VCPVLLFGGGG_					0	0	0			REV__ENST00000472524.1_1_11:64122872-64124957:+|nuORF	REV__ENST00000472524.1_1_11:64122872-64124957:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.283935546875	2	509.773145	1017.53174	-0.55441	-0.00028262	2.8755	0.0014659	2.3211	0.0011832	509.77454905066304	69.697	0.66735	69.43	69.164	69.831	-0.26725					26	15	2	0	0	0	0.024764	1	8129	8129		40.573	0	1	556540	+		82547	33208	57488	57582	91624	91624					0.02367302059519716
VCQQEQVGVL	10	Unmodified	_VCQQEQVGVL_					0	0	0			REV__nc|ENSG00000123843|P20851-2|C4BPB	REV__nc|ENSG00000123843|P20851-2|C4BPB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	551.2404174804688	2	551.781699	1101.54884	-0.88449	-0.00048804	1.1859	0.00065438	0.30145	0.00016634	551.7820614916493	82.972	0.5553	82.998	82.702	83.257	0.026558					14	11	2	0	0	0	0.03519	1	10291	10291		21.96	0	1	129840	+		82548	22717	57489	57583	91625	91625					0.0021317787463885907
VCQRLSLKS	9	Unmodified	_VCQRLSLKS_					0	0	0		ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.292724609375	2	517.294776	1032.575	-0.69821	-0.00036118	-3.2869	-0.0017003	-3.9851	-0.0020615	517.2930434943544	32.13	0.70465	32.13	31.789	32.494	0					54	17	4	0	0	0	0.67687	1	2179	2179		47.657	1.7054	1	7851200			82549	1139	57490	57584	91626	91626					0.06001491836786954
VCQTRGGTC	9	Unmodified	_VCQTRGGTC_					0	0	0			REV__ENSG00000164619|ENST00000649409|BMPER	REV__ENSG00000164619|ENST00000649409|BMPER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7560729980469	2	462.704937	923.39532	0.14881	6.8855E-05	4.1305	0.0019112	4.2794	0.0019801	462.7070324056436	40.399	0.13347	40.399	40.314	40.448	0					5	3	2	0	0	0	0.024511	1	3553	3553		32.812	15.447	1	123830	+		82550	25779	57491	57585	91627	91627					-0.0694413544267718
VCRDVMYH	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))RDVMYH_	VC(1)RDVMYH		VC(68)RDVMYH		0	1	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.2620239257812	2	540.241686	1078.46882	-0.47833	-0.00025842	-4.4075	-0.0023811	-4.8858	-0.0026395	540.7402765368571	61.933	0.15096	61.719	61.624	61.774	-0.21375					5	3	2	0	0	0	0.027866	1	6949	6949		68.485	37.981	1	49295	+		82551	25017	57492	57586	91628	91628	330				-0.06727587000204949
VCRLLRQL	8	Unmodified	_VCRLLRQL_					0	0	0			REV__ENST00000589335.5_1_17:58329793-58422939:-|nuORF	REV__ENST00000589335.5_1_17:58329793-58422939:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.80792236328125	2	500.807854	999.601155	1.1367	0.00056929	-1.4491	-0.00072572	-0.31236	-0.00015643	500.80691396471514	107.23	0.54973	107.23	106.88	107.43	0					24	10	3	0	0	0	0.96719	1	13778	13778		42.474	3.2216	1	389010	+		82552	35674	57493	57587	91629	91629					0.10133805798921003
VCRLTVPEL	9	Unmodified	_VCRLTVPEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7740478515625	2	515.291702	1028.56885	0.021942	1.1306E-05	-3.7554	-0.0019351	-3.7334	-0.0019238	515.2896318760492	68.965	0.53088	68.734	68.439	68.97	-0.23048					18	12	2	0	0	0	0.019436	1	7975	7975		95.815	56.562	1	257150	+		82553	20753	57494	57588	91630	91630					0.05570973605267682
VCSAPRRGLP	10	Unmodified	_VCSAPRRGLP_					0	0	0		ENST00000461654.1_1_3:119182219-119182481:-|nuORF	ENST00000461654.1_1_3:119182219-119182481:-|nuORF	ENST00000461654.1_1_3:119182219-119182481:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.7718505859375	2	528.292568	1054.57058	-0.92516	-0.00048875	1.0957	0.00057885	0.17054	9.0097E-05	528.2921931072165	55.906	0.51623	55.75	55.535	56.052	-0.15656					26	13	3	0	0	0	0.03519	1	5996	5996		47.657	0	1	193000			82554	14686	57495	57589	91631	91631					0.04548027413852651
VCSMCPHGY	9	Unmodified	_VCSMCPHGY_					0	0	0			REV__ENST00000423469.6_1_8:144917834-144920143:-|nuORF	REV__ENST00000423469.6_1_8:144917834-144920143:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.7716979980469	2	498.690441	995.366329	-0.43659	-0.00021772	2.1933	0.0010938	1.7567	0.00087604	498.69102721012126	31.151	0.15797	30.966	30.865	31.023	-0.18503					5	3	2	0	0	0	0.024541	1	2034	2034		20.482	0	1	30115	+		82555	32219	57496	57590	91632	91632					-0.13153996063317663
VCSQSDLGPVY	11	Unmodified	_VCSQSDLGPVY_					0	0	0			REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.2694702148438	2	584.271164	1166.52777	0.039387	2.3013E-05	-2.11	-0.0012328	-2.0707	-0.0012098	584.269772673167	77.708	1.5352	77.466	77.148	78.683	-0.24232					101	35	4	0	0	0	0.48498	2	9256	9247;9256		77.318	6.3214	1	3666000	+		82556	37565	57497	57591	91633;91634	91634					-0.04882832224870981
VCSQSDLGPVY	11	Unmodified	_VCSQSDLGPVY_					0	0	0			REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	REV__sp|P14347|BFRF2_EBVB9LategeneexpressionregulatorBFRF2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BFRF2PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.269287109375	2	584.271164	1166.52777	-0.74981	-0.00043809	-1.5209	-0.00088862	-2.2707	-0.0013267	584.2700868116382	77.645	1.6269	77.483	77.183	78.809	-0.16196					113	37	5	0	0	0	0.44817	1	9230	9230		79.713	2.9384	1	3708000	+		82557	37565	57497	57591	91635	91635					-0.04882832224870981
VCSTSSFL	8	Unmodified	_VCSTSSFL_					0	0	0			REV__ENST00000435682.1_1_2:21912159-21933190:-|nuORF	REV__ENST00000435682.1_1_2:21912159-21933190:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.1994323730469	2	422.199479	842.384405	0.691	0.00029174	-2.4544	-0.0010363	-1.7634	-0.00074452	422.1982005437535	82.778	1.4222	82.558	82.086	83.509	-0.22015					61	32	2	0	0	0	1.0017	1	9995	9995		37.028	1.8278	1	194070	+		82558	32444	57498	57592	91636	91636					-0.04309214545298801
VCSTSSFL	8	Unmodified	_VCSTSSFL_					0	0	0			REV__ENST00000435682.1_1_2:21912159-21933190:-|nuORF	REV__ENST00000435682.1_1_2:21912159-21933190:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.199479	842.384405	0.40184	0.00016966	-2.4143	-0.0010193	-2.0125	-0.00084967	422.19828230493573	82.772	1.3324	82.591	81.984	83.316	-0.18079	0.023011	-9.706E-05	NaN	37.028	56	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186290	+		82559	32444	57498	57592							-0.04309214545298801
VCSTSSFL	8	Unmodified	_VCSTSSFL_					0	0	0			REV__ENST00000435682.1_1_2:21912159-21933190:-|nuORF	REV__ENST00000435682.1_1_2:21912159-21933190:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	422.199479	842.384405	-0.079479	-3.3556E-05	-2.0748	-0.00087599	-2.1543	-0.00090954	422.1984270439818	82.696	1.3796	82.556	82.043	83.422	-0.14014	-0.012173	0.00018961	NaN	37.028	59	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151500	+		82560	32444	57498	57592							-0.04309214545298801
VCTIVDQDKD	10	Unmodified	_VCTIVDQDKD_					0	0	0			REV__TAF1L|p.A173V|1|0.31|ENSG00000122728|chr9:32635062-32635062|G/A|missense_variant	REV__TAF1L|p.A173V|1|0.31|ENSG00000122728|chr9:32635062-32635062|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3294067382812	2	568.268621	1134.52269	-0.61299	-0.00034834	1.4759	0.00083873	0.86295	0.00049038	568.2694402395201	93.3	0.72038	93.3	92.967	93.687	0					37	16	3	0	0	0	0.03519	1	11832	11832		24.519	0	1	423200	+		82561	37673	57499	57593	91637	91637					-0.03919136087483821
VCTKTGNLTY	10	Unmodified	_VCTKTGNLTY_					0	0	0			REV__ENST00000585420.5_1_19:13002616-13007066:+|nuORF	REV__ENST00000585420.5_1_19:13002616-13007066:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8077392578125	2	550.276249	1098.53795	0.57733	0.00031769	-3.8632	-0.0021258	-3.2858	-0.0018081	550.2739524078736	60.121	0.73187	59.924	59.613	60.345	-0.19742					37	18	4	0	0	0	0.03519	1	6699	6699		24.519	1.4767	1	801400	+		82562	35574	57500	57594	91638	91638					-0.007382244996506415
VCVCLMPRQ	9	Unmodified	_VCVCLMPRQ_					0	0	0			REV__ENST00000468221.5_1_2:219246767-219246929:+|nuORF	REV__ENST00000468221.5_1_2:219246767-219246929:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2879028320312	2	524.758658	1047.50276	-0.3717	-0.00019505	-3.1684	-0.0016627	-3.5401	-0.0018577	524.7564999017079	28.829	0.46585	28.679	28.403	28.869	-0.14952					15	10	2	0	0	0	0.024466	1	1661	1661		25.45	0	1	135010	+		82563	33099	57501	57595	91639	91639					-0.019088818328100388
VCVFLLLVCV	10	Unmodified	_VCVFLLLVCV_					0	0	0			REV__ENST00000486390.1_1_1:16767863-16768082:+|nuORF	REV__ENST00000486390.1_1_1:16767863-16768082:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7792358398438	2	554.318874	1106.6232	-0.87169	-0.00048319	-0.63642	-0.00035278	-1.5081	-0.00083597	554.8200778004826	62.3	0.2661	62.123	61.963	62.229	-0.17782					10	6	2	0	0	0	0.03519	1	7004	7004		26.796	7.4361	1	100320	+		82564	33588	57502	57596	91640	91640					0.07414849432461779
VCVPGLCL	8	Unmodified	_VCVPGLCL_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8112487792969	2	402.211335	802.408117	0.34348	0.00013815	1.4656	0.00058947	1.8091	0.00072762	402.21186323351395	29.641	1.4084	29.468	28.507	29.915	-0.17258					52	32	3	0	0	0	0.027866	1	1701	1701		5.0869	1.1017	1	454880			82565	8573	57503	57597	91641	91641					-0.0009907231250281257
VCVPGLCL	8	Unmodified	_VCVPGLCL_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	402.211335	802.408117	-0.062101	-2.4978E-05	2.1105	0.00084885	2.0484	0.00082388	402.21208307974257	29.715	0.80391	29.715	29.333	30.137	0	0.14254	0.00038064	NaN	5.0869	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314790			82566	8573	57503	57597							-0.0009907231250281257
VCVPGLCL	8	Unmodified	_VCVPGLCL_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	402.211335	802.408117	0.0050471	2.03E-06	1.9927	0.00080147	1.9977	0.0008035	402.2119890931884	29.657	0.64838	29.66	29.388	30.036	0.0031357	0.08776	0.00028587	NaN	5.0869	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280640			82567	8573	57503	57597							-0.0009907231250281257
VCVPGLCL	8	Unmodified	_VCVPGLCL_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	402.211335	802.408117	1.8113	0.00072854	0.56261	0.00022629	2.3739	0.00095483	402.2113653844321	29.472	1.0284	29.55	28.979	30.007	0.078346	-0.021734	-0.00086449	NaN	5.0869	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250290			82568	8573	57503	57597							-0.0009907231250281257
VCVPGLCL	8	Unmodified	_VCVPGLCL_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	402.211335	802.408117	0.038532	1.5498E-05	1.4253	0.00057328	1.4638	0.00058878	402.21187632187826	29.722	0.84795	29.477	29.142	29.99	-0.24524	-0.0953	-0.00017051	NaN	5.0869	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391330			82569	8573	57503	57597							-0.0009907231250281257
VCVPGLCL	8	Unmodified	_VCVPGLCL_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	402.211335	802.408117	-0.45867	-0.00018448	2.3775	0.00095625	1.9188	0.00077177	402.2123175036711	29.712	1.1362	29.563	29.044	30.18	-0.14952	-0.0093605	0.00059543	NaN	5.0869	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378420			82570	8573	57503	57597							-0.0009907231250281257
VCVPSYLEL	9	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))VPSYLEL_	VC(1)VPSYLEL		VC(100)VPSYLEL		0	1	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2762451171875	2	540.275718	1078.53688	-1.0633	-0.00057447	4.0415	0.0021835	2.9782	0.0016091	540.2777271564354	60.933	1.7757	61.004	60.004	61.779	0.071125					98	46	4	0	0	0	0.13494	1	6959	6959		102.77	31.478	1	3404300			82571	2388	57504	57598	91642	91642	33				0.0007556113143891707
VCWLEKMNN	9	Unmodified	_VCWLEKMNN_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2;REV__ERCC6L2|p.F323Lfs*30|1|0.18|ENSG00000182150|chr9:96012598-96012598|T/-|frameshift_variant	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.8106689453125	2	568.764994	1135.51544	-1.1464	-0.00065201	0.32487	0.00018477	-0.8215	-0.00046724	568.7653813555679	69.527	0.58529	69.542	69.209	69.794	0.015129					24	14	2	0	0	0	0.024205	1	8256	8256		63.306	27.688	1	141860	+		82572	27450;36012	57505	57599	91643	91643					-0.046901471689125174
VDAGHTLLLD	10	Unmodified	_VDAGHTLLLD_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6|TANC2	REV__nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.3021850585938	2	527.282389	1052.55022	-0.2948	-0.00015544	4.2539	0.002243	3.9591	0.0020876	527.2842365479279	75.059	0.7497	74.796	74.404	75.153	-0.26326					22	17	2	0	0	0	0.03519	1	8820	8820		34.173	5.023	1	149450	+		82573	26519	57506	57600	91644	91644					0.026051352350577872
VDAGKLHYH	9	Unmodified	_VDAGKLHYH_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2675170898438	2	520.269616	1038.52468	-1.5666	-0.00081507	-3.1499	-0.0016388	-4.7165	-0.0024538	520.2679631185694	20.544	1.1669	20.544	20.028	21.195	0					55	23	4	0	0	0	0.75397	1	572	572		42.396	5.237	1	812800			82574	1604	57507	57601	91645	91645					0.006957055032899007
VDAGNGVLLEL	11	Unmodified	_VDAGNGVLLEL_					0	0	0			REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF	REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.7582397460938	2	550.303321	1098.59209	-0.29794	-0.00016396	-1.279	-0.00070382	-1.5769	-0.00086778	550.3025191819572	68.118	0.94744	67.83	67.268	68.215	-0.28834					26	23	2	0	0	0	0.024756	1	8177	8177		52.937	10.462	1	237190	+		82575	28711	57508	57602	91646	91646					0.04673690923573304
VDAKEIVADST	11	Unmodified	_VDAKEIVADST_					0	0	0			REV__ENSG00000115977|ENST00000409085|AAK1	REV__ENSG00000115977|ENST00000409085|AAK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	574.3154296875	2	574.295693	1146.57683	-1.1817	-0.00067862	-0.74166	-0.00042593	-1.9233	-0.0011046	574.295606339077	56.3	0.90099	56.3	56.035	56.936	0					35	25	2	0	0	0	0.024814	1	6347	6347		61.691	25.245	1	167300	+		82576	22246	57509	57603	91647	91647					0.009407793357013361
VDAKKIGPL	9	Unmodified	_VDAKKIGPL_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.7838134765625	2	470.794935	939.575317	0.19581	9.2186E-05	-0.75057	-0.00035336	-0.55475	-0.00026118	470.79407417523123	46.926	0.52776	46.657	46.415	46.943	-0.26939					19	14	2	0	0	0	0.024021	1	4545	4545		58.782	0.97068	1	430150			82577	1436	57510	57604	91648	91648					0.10311234828270699
VDALATKGRL	10	Unmodified	_VDALATKGRL_					0	0	0		nc|ENSG00000180011|Q8N4Q0-2|PTGR3;ENSG00000180011|ENST00000322342|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	nc|ENSG00000180011|Q8N4Q0-2|PTGR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.3134765625	2	522.314023	1042.61349	-0.5108	-0.0002668	1.453	0.00075894	0.94223	0.00049214	522.3145142338739	31.962	0.43879	32.031	31.805	32.244	0.06885					30	10	4	0	0	0	0.57594	1	2129	2129		79.713	2.395	1	1124800			82578	8953	57511	57605	91649	91649					0.0938912074293512
VDALGRGVTV	10	Unmodified	_VDALGRGVTV_					0	0	0		ENST00000321264.8_1_2:242707521-242708037:+|nuORF	ENST00000321264.8_1_2:242707521-242708037:+|nuORF	ENST00000321264.8_1_2:242707521-242708037:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7850646972656	2	493.785099	985.555644	0.25844	0.00012761	-0.44391	-0.0002192	-0.18547	-9.158E-05	493.7847408991358	56.944	0.64471	56.719	56.426	57.07	-0.2248					44	16	4	0	0	0	0.74632	1	6174	6174		64.207	0	1	3980500			82579	12205	57512	57606	91650	91650					0.06228858817519267
VDANQKSVLG	10	Unmodified	_VDANQKSVLG_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.7813110351562	2	515.780013	1029.54547	0.42726	0.00022037	3.8991	0.0020111	4.3264	0.0022315	515.7819126822233	71.716	1.2236	71.427	71.113	72.337	-0.28858					92	31	5	0	0	0	0.50091	1	8686	8686		88.177	0.4805	1	4783600			82580	7910	57513	57607	91651	91651					0.03188251092274186
VDATAEQEL	9	Unmodified	_VDATAEQEL_					0	0	0			REV__ENSG00000136718|ENST00000259239|IMP4	REV__ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	488.23541259765625	2	488.235104	974.455655	-0.80071	-0.00039094	1.6328	0.00079719	0.83208	0.00040625	488.23574126598385	83.596	0.94864	83.596	83.266	84.215	0					52	21	3	0	0	0	0.4752	1	10456	10456		60.972	0	1	1354700	+		82581	23676	57514	57608	91652	91652					-0.03259423306951703
VDATCKGN	8	Unmodified	_VDATCKGN_					0	0	0		ENST00000431167.1_1_21:36972032-36972302:-|nuORF	ENST00000431167.1_1_21:36972032-36972302:-|nuORF	ENST00000431167.1_1_21:36972032-36972302:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.2328186035156	2	404.186903	806.359253	0.87097	0.00035203	1.4471	0.00058489	2.3181	0.00093693	404.186951902046	81.762	1.0106	81.533	80.98	81.991	-0.2289					46	23	3	0	0	0	0.027866	1	9820	9820		30.504	0	1	101150			82582	14182	57515	57609	91653	91653					-0.051672693478849396
VDATLNPLF	9	Unmodified	_VDATLNPLF_					0	0	0			REV__ENSG00000008952|ENST00000337002|SEC62	REV__ENSG00000008952|ENST00000337002|SEC62	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.3084411621094	2	495.26875	988.522947	0.036197	1.7927E-05	0.99944	0.00049499	1.0356	0.00051292	495.2701502245797	79.124	0.3663	79.143	78.987	79.354	0.018669					11	8	2	0	0	0	0.024541	1	9739	9739		17.365	0	1	90801	+		82583	19888	57516	57610	91654	91654					0.02822651694657452
VDAWAGPAQV	10	Unmodified	_VDAWAGPAQV_					0	0	0		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.8121337890625	2	507.256174	1012.49779	-0.17292	-8.7717E-05	0.37382	0.00018962	0.20089	0.0001019	507.25629193326836	54.643	1.4044	54.492	54.156	55.56	-0.15036					79	39	3	0	0	0	0.03519	1	6002	6002		42.396	0	1	2824700			82584	10004	57517	57611	91655	91655					-0.007954031079066226
VDAYPGLCPP	10	Unmodified	_VDAYPGLCPP_					0	0	0		KSR2|p.L536Sfs*61|1|0.67|ENSG00000171435|chr12:117539800-117539800|G/-|frameshift_variant;ENSG00000171435|ENST00000339824|KSR2	KSR2|p.L536Sfs*61|1|0.67|ENSG00000171435|chr12:117539800-117539800|G/-|frameshift_variant	KSR2|p.L536Sfs*61|1|0.67|ENSG00000171435|chr12:117539800-117539800|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.27734375	2	516.24696	1030.47937	-0.056473	-2.9154E-05	-0.875	-0.00045171	-0.93147	-0.00048087	516.2462964828194	45.952	0.36977	45.855	45.669	46.039	-0.096653					15	9	2	0	0	0	0.03519	1	4406	4406		16.473	0	1	307890			82585	8146	57518	57612	91656	91656					-0.03465281074136328
VDCGQIFGETC	11	Unmodified	_VDCGQIFGETC_					0	0	0			REV__ENST00000334564.11_1_19:52817458-52824874:+|nuORF	REV__ENST00000334564.11_1_19:52817458-52824874:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	586.2412719726562	2	586.241549	1170.46855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.674	1	61.496	60.996	61.996	-0.17781								0	0	0	0.805	1	6912	6912		63.534	1.4264	1		+		82586	30522	57519	57613	91657	91657					-0.10987051510687706
VDCLFHNI	8	Unmodified	_VDCLFHNI_					0	0	0			REV__ENSG00000180475|ENST00000316770|OR10Q1	REV__ENSG00000180475|ENST00000316770|OR10Q1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7506103515625	2	480.73402	959.453487	0.0034235	1.6458E-06	-3.6063	-0.0017337	-3.6028	-0.001732	480.7322228596116	32.98	3.7104	33.039	32.612	36.322	0.059048					147	97	3	0	0	0	0.027866	1	2298	2298		47.916	0	1	793490	+		82587	27345	57520	57614	91658	91658					-0.02786130525748831
VDCLPAQLQA	10	Unmodified	_VDCLPAQLQA_					0	0	0		ENST00000314485.11_2_1:160061198-160061616:-|nuORF	ENST00000314485.11_2_1:160061198-160061616:-|nuORF	ENST00000314485.11_2_1:160061198-160061616:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.296875	2	529.270967	1056.52738	-0.91309	-0.00048327	1.3119	0.00069435	0.39882	0.00021108	529.2715528373366	56.284	0.57288	56.284	56.035	56.608	0					29	15	2	0	0	0	0.03519	1	6233	6233		56.721	0	1	946530			82588	12118	57521	57615	91659	91659					0.0013779284593056218
VDCLPAQLQA	10	Unmodified	_VDCLPAQLQA_					0	0	0		ENST00000314485.11_2_1:160061198-160061616:-|nuORF	ENST00000314485.11_2_1:160061198-160061616:-|nuORF	ENST00000314485.11_2_1:160061198-160061616:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	529.270967	1056.52738	-0.69135	-0.00036591	1.985	0.0010506	1.2936	0.00068469	529.2713291773213	56.133	0.58133	56.231	55.965	56.546	0.097893					49	15	4	0	0	0	0.03519	1	6138	6138		56.721	0	1	938540			82589	12118	57521	57615	91660	91660					0.0013779284593056218
VDCVGLIKGD	10	Unmodified	_VDCVGLIKGD_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.28363037109375	2	509.765517	1017.51648	0.11224	5.7214E-05	-2.4038	-0.0012254	-2.2916	-0.0011682	509.7639316782293	70.183	0.36259	69.968	69.772	70.135	-0.21425					14	8	2	0	0	0	0.03519	1	8137	8137		47.96	22.385	1	189740			82590	7217	57522	57616	91661	91661					0.008423904716437391
VDDDRILVI	9	Unmodified	_VDDDRILVI_					0	0	0			REV__ENST00000434597.2_1_9:37477166-37477928:+|nuORF	REV__ENST00000434597.2_1_9:37477166-37477928:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7553100585938	2	529.298039	1056.58152	-0.88309	-0.00046742	1.4366	0.0007604	0.55354	0.00029299	529.2993918415708	85.738	0.70564	85.761	85.367	86.072	0.023666					26	16	2	0	0	0	0.024323	1	10646	10646		44.117	16.235	1	94147	+		82591	32426	57523	57617	91662	91662					0.055497082691545074
VDDEIIAIN	9	Unmodified	_VDDEIIAIN_					0	0	0		nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;ENST00000485987.1_1_13:76397799-76412346:+|nuORF;nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.80584716796875	2	501.261122	1000.50769	0.29929	0.00015002	0.89817	0.00045022	1.1975	0.00060024	501.2613983661139	42.49	0.69691	42.49	42.053	42.75	0					39	19	3	0	0	0	0.023181	1	3867	3867		51.335	25.761	1	503930			82592	4988	57524	57618	91663	91663					0.007457401067995306
VDDEIIAIN	9	Unmodified	_VDDEIIAIN_					0	0	0		nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;ENST00000485987.1_1_13:76397799-76412346:+|nuORF;nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8052978515625	2	501.261122	1000.50769	0.18683	9.3648E-05	1.346	0.00067471	1.5328	0.00076836	501.26146193092296	42.698	0.5717	42.724	42.289	42.861	0.026012					32	15	3	0	0	0	0.02435	1	3830	3830		42.396	8.2236	1	591120			82593	4988	57524	57618	91664	91664					0.007457401067995306
VDDERKPE	8	Unmodified	_VDDERKPE_					0	0	0			REV__ENSG00000165832|ENST00000298746|TRUB1	REV__ENSG00000165832|ENST00000298746|TRUB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.2897644042969	2	494.240721	986.466889	0.14389	7.1119E-05	-1.2107	-0.0005984	-1.0668	-0.00052728	494.2401837159935	61.382	0.19613	61.453	61.394	61.59	0.071125					7	4	2	0	0	0	0.027866	1	7040	7040		35.618	6.4687	1	102200	+		82594	25938	57525	57619	91665	91665					-0.026886012128102266
VDDFASFQR	9	Unmodified	_VDDFASFQR_					0	0	0		nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	nc|ENSG00000100150|O75140-8|DEPDC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.7747802734375	2	542.756538	1083.49852	-0.19957	-0.00010832	2.9918	0.0016238	2.7922	0.0015155	542.7582401175122	72.581	0.16263	72.59	72.489	72.652	0.0097733					5	3	2	0	0	0	0.024457	1	8762	8762		29.15	2.4566	1	50869			82595	2142	57526	57620	91666	91666					-0.0398860845884883
VDDGVDVSANP	11	Unmodified	_VDDGVDVSANP_					0	0	0			REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	544.7898559570312	2	544.248743	1086.48293	-1.2747	-0.00069374	0.47869	0.00026053	-0.79599	-0.00043322	544.2492518220116	33.243	0.64397	33.249	33.005	33.649	0.0066261					27	17	2	0	0	0	0.024765	1	2409	2409		49.536	28.589	1	123800	+		82596	28420	57527	57621	91667	91667					-0.05684939766570096
VDDKRLLK	8	Unmodified	_VDDKRLLK_					0	0	0			REV__ENST00000423083.1_1_7:72645910-72649821:+|nuORF	REV__ENST00000423083.1_1_7:72645910-72649821:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.25341796875	2	493.803291	985.59203	-0.053402	-2.637E-05	-0.38247	-0.00018886	-0.43587	-0.00021523	493.80290901846575	56.951	0.37041	56.951	56.778	57.148	0					17	10	2	0	0	0	0.027866	1	6393	6393		32.812	0	1	776100	+		82597	32211	57528	57622	91668	91668					0.09865735714242874
VDDLKEKEP	9	Unmodified	_VDDLKEKEP_					0	0	0			REV__ENSG00000182898|ENST00000368806|TCHHL1	REV__ENSG00000182898|ENST00000368806|TCHHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8383178710938	2	536.779679	1071.5448	-0.012746	-6.8416E-06	-4.484	-0.0024069	-4.4968	-0.0024138	536.7773164089684	72.021	0.44898	72.021	71.642	72.091	0					13	11	2	0	0	0	0.024374	1	8716	8716		40.778	25.136	1	77353	+		82598	27517	57529	57623	91669	91669					0.011894116525809295
VDDPLLQI	8	Unmodified	_VDDPLLQI_					0	0	0			REV__ENST00000432460.1_3_2:219523523-219523947:-|nuORF	REV__ENST00000432460.1_3_2:219523523-219523947:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.7574462890625	2	456.755475	911.496398	0.4045	0.00018476	4.4571	0.0020358	4.8616	0.0022206	456.757371315262	23.005	0.69977	22.803	22.453	23.153	-0.20193					36	14	3	0	0	0	0.65272	1	883	883		71.378	5.5747	1	803460	+		82599	32383	57530	57624	91670	91670					0.03710962803347684
VDDWLEFD	8	Unmodified	_VDDWLEFD_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2984619140625	2	519.724372	1037.43419	-0.0079663	-4.1403E-06	0.019606	1.019E-05	0.01164	6.0494E-06	519.7242566986583	60.261	0.53824	60.064	59.765	60.303	-0.19742					21	13	2	0	0	0	0.027866	1	6727	6727		33.516	6.8227	1	166060	+		82600	23452	57531	57625	91671	91671					-0.08302808335656664
VDEAVRKGL	9	Unmodified	_VDEAVRKGL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.288330078125	2	493.785099	985.555644	-0.19922	-9.8374E-05	-3.7392	-0.0018464	-3.9385	-0.0019448	493.7797785056796	57.96	1.4252	58.051	57.643	59.068	0.091217					119	38	6	0	0	0	0.39228	1	6526	6526		66.429	4.3219	1	14888000			82601	18548	57532	57626	91672	91672					0.06228858817530636
VDEDIIVTQ	9	Unmodified	_VDEDIIVTQ_					0	0	0		ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2896728515625	2	516.266404	1030.51826	-0.252	-0.0001301	1.274	0.00065771	1.022	0.00052761	516.2673485510578	33.932	0.19836	33.927	33.79	33.988	-0.0045624					7	4	2	0	0	0	0.024405	1	2479	2479		20.947	0.95016	1	27646			82602	6552	57533	57627	91673	91673					0.004217227612343777
VDEEIQTHT	9	Unmodified	_VDEEIQTHT_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.2667846679688	2	536.251286	1070.48802	-0.87395	-0.00046866	-0.99433	-0.00053321	-1.8683	-0.0010019	536.2507608221863	48.299	1.3431	48.299	47.906	49.249	0					92	38	3	0	0	0	0.024354	1	5043	5043		38.806	3.1879	1	840580	+		82603	23842	57534	57628	91674	91674					-0.04440635903961265
VDEGGPGVDEA	11	Unmodified	_VDEGGPGVDEA_					0	0	0			REV__ENSG00000174450|ENST00000567107|GOLGA6L2	REV__ENSG00000174450|ENST00000567107|GOLGA6L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3101196289062	2	522.727643	1043.44073	-1.124	-0.00058757	2.0683	0.0010812	0.94429	0.00049361	522.7284815172319	60.36	0.51134	60.36	60.181	60.692	0					24	13	2	0	0	0	0.024747	1	6959	6959		18.262	6.0552	1	394130	+		82604	26864	57535	57629	91675	91675					-0.0792491517495364
VDEGQDREVP	10	Unmodified	_VDEGQDREVP_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.2693481445312	2	572.267467	1142.52038	0.50597	0.00028955	4.1731	0.0023881	4.679	0.0026777	572.2697949389308	85.018	1.8221	84.814	84.459	86.281	-0.20329					100	42	4	0	0	0	0.73195	3	10271	10271;10281;10294		65.157	3.8704	1	1716700			82605	6613	57536	57630	91676;91677;91678	91676					-0.045178485009500946
VDEGQDREVP	10	Unmodified	_VDEGQDREVP_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2694702148438	2	572.267467	1142.52038	0.80949	0.00046325	3.7755	0.0021606	4.585	0.0026238	572.2695586517846	84.933	2.3333	84.774	84.405	86.738	-0.15869					108	54	4	0	0	0	0.49336	2	10289	10279;10289		89.029	21.535	1	1791900			82606	6613	57536	57630	91679;91680	91680					-0.045178485009500946
VDEGQDREVP	10	Unmodified	_VDEGQDREVP_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.2699584960938	2	572.267467	1142.52038	0.50293	0.00028781	3.9439	0.002257	4.4469	0.0025448	572.2696616588045	84.913	1.9924	84.776	84.407	86.399	-0.13753					101	46	4	0	0	0	0.62511	1	10267	10267		74.165	12.474	1	1720100			82607	6613	57536	57630	91681	91681					-0.045178485009500946
VDEGQDREVP	10	Unmodified	_VDEGQDREVP_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	572.267467	1142.52038	-0.045525	-2.6052E-05	4.7909	0.0027417	4.7454	0.0027156	572.2700709396067	84.953	1.8458	84.953	84.628	86.474	0	0.10011	0.00054525	NaN	89.029	91	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303200			82608	6613	57536	57630							-0.045178485009500946
VDEGQDREVP	10	Unmodified	_VDEGQDREVP_					0	0	0		nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENSG00000157637|ENST00000374759|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	572.267467	1142.52038	-1.0237	-0.00058583	5.7507	0.0032909	4.727	0.0027051	572.2706469274149	84.901	1.0795	84.926	84.579	85.659	0.025528	0.073174	0.0016438	NaN	89.029	69	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1229600			82609	6613	57536	57630							-0.045178485009500946
VDEIEAALSN	10	Unmodified	_VDEIEAALSN_					0	0	0		ENSG00000101311|ENST00000217289|FERMT1;nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	ENSG00000101311|ENST00000217289|FERMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.319091796875	2	530.761486	1059.50842	-0.015092	-8.0102E-06	3.1783	0.0016869	3.1632	0.0016789	530.7630523627984	104.17	0.53555	104.17	103.89	104.43	-0.0032196					29	12	3	0	0	0	0.03519	1	13266	13266		41.427	7.2541	1	137470			82610	2310	57537	57631	91682	91682					-0.018954652441152575
VDEIFDSLD	9	Unmodified	_VDEIFDSLD_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2820434570312	2	526.742762	1051.47097	0.41426	0.00021821	-3.4235	-0.0018033	-3.0092	-0.0015851	526.7409596726609	63.411	0.38413	63.153	63.041	63.425	-0.25824					15	9	2	0	0	0	0.024457	1	7135	7135		15.642	0	1	178030	+		82611	26855	57538	57632	91683	91683					-0.05270556509776725
VDEIIACYY	9	Carbamidomethyl (C)	_VDEIIAC(Carbamidomethyl (C))YY_	VDEIIAC(1)YY		VDEIIAC(110)YY		0	1	0			REV__ENSG00000143324|ENST00000367590|XPR1	REV__ENSG00000143324|ENST00000367590|XPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.2578125	2	573.262807	1144.51106	0.040129	2.3005E-05	-3.8579	-0.0022116	-3.8178	-0.0021886	573.2596837940429	79.697	0.8364	79.546	79.195	80.031	-0.15051					75	19	6	0	0	0	0.12366	2	9524	9513;9524		105.27	17.514	1	2902000	+		82612	24226	57539	57633	91684;91685	91685	316				-0.055413331108638886
VDELEYFVN	9	Unmodified	_VDELEYFVN_					0	0	0			REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.266357421875	2	564.266404	1126.51826	-0.0093432	-5.2721E-06	0.012383	6.9872E-06	0.0030397	1.7152E-06	564.2663254149563	76.581	0.91814	76.313	76.008	76.927	-0.26806					49	21	4	0	0	0	0.13494	2	9068	9068;9080		102.77	8.7669	1	3573600	+		82613	29203	57540	57634	91686;91687	91686					-0.03994277238757604
VDELEYFVN	9	Unmodified	_VDELEYFVN_					0	0	0			REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	REV__nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2667236328125	2	564.266404	1126.51826	-0.17958	-0.00010133	0.07764	4.381E-05	-0.10194	-5.7522E-05	564.2663760655837	76.371	0.87784	76.202	75.816	76.693	-0.16854					49	20	4	0	0	0	0.13494	1	9063	9063		102.77	8.7669	1	4199200	+		82614	29203	57540	57634	91688	91688					-0.03994277238757604
VDELKLYLDN	10	Unmodified	_VDELKLYLDN_					0	0	0			REV__ENSG00000151151|ENST00000373935|IPMK	REV__ENSG00000151151|ENST00000373935|IPMK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.8876953125	3	407.883566	1220.62887	-1.3454	-0.00054875	0.41191	0.00016801	-0.93344	-0.00038074	407.883483106417	33.819	0.3894	33.643	33.507	33.896	-0.17557					15	9	2	0	0	0	0.03519	1	2412	2412		13.508	0	1	187100	+		82615	24757	57541	57635	91689	91689					0.027379427494679476
VDELLPVDE	9	Unmodified	_VDELLPVDE_					0	0	0			REV__nc|ENSG00000288642|P51861|CDR1	REV__nc|ENSG00000288642|P51861|CDR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8148803710938	2	514.760955	1027.50736	-0.65942	-0.00033944	0.65218	0.00033572	-0.0072367	-3.7252E-06	514.761686735809	45.217	0.71745	45.217	44.862	45.58	0					69	20	5	0	0	0	0.024436	1	4342	4342		23.042	0	1	2572300	+		82616	37222	57542	57636	91690	91690					-0.005296796130551229
VDELQGKAW	9	Unmodified	_VDELQGKAW_					0	0	0			REV__ENST00000578883.1_1_17:29351359-29359472:+|nuORF	REV__ENST00000578883.1_1_17:29351359-29359472:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2263793945312	2	523.269281	1044.52401	-0.70116	-0.0003669	-0.42244	-0.00022105	-1.1236	-0.00058795	523.2685804884693	52.524	0.15846	52.4	52.276	52.435	-0.124					5	3	2	0	0	0	0.024436	1	5465	5465		16.473	0	1	53023	+		82617	35495	57543	57637	91691	91691					0.0035286606357658457
VDEMFYVL	8	Unmodified	_VDEMFYVL_					0	0	0		ENSG00000100302|ENST00000216127|RASD2	ENSG00000100302|ENST00000216127|RASD2	ENSG00000100302|ENST00000216127|RASD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2765808105469	2	508.243886	1014.47322	0.72831	0.00037016	1.7021	0.00086508	2.4304	0.0012352	508.2456963441168	78.362	0.4082	78.17	77.849	78.257	-0.19211					12	9	2	0	0	0	0.027866	1	9658	9658		35.201	6.9464	1	95855			82618	2174	57544	57638	91692	91692					-0.033437993056509185
VDENDRRE	8	Unmodified	_VDENDRRE_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.297119140625	2	516.738877	1031.4632	-0.80651	-0.00041676	2.512	0.0012981	1.7055	0.00088131	516.7400596397138	26.6	1.4127	26.364	25.843	27.255	-0.23603					62	36	2	0	0	0	0.027866	1	1441	1441		47.657	11.211	1	304310			82619	4474	57545	57639	91693	91693					-0.051272709866452715
VDEPIIPI	8	Unmodified	_VDEPIIPI_					0	0	0			REV__nc|ENSG00000183579|Q9ULT6-2|ZNRF3	REV__nc|ENSG00000183579|Q9ULT6-2|ZNRF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	448.258544921875	2	448.260394	894.506234	0.22564	0.00010115	-3.2498	-0.0014568	-3.0242	-0.0013556	448.2589828323748	86.522	1.0706	86.336	85.991	87.062	-0.18696					55	24	3	0	0	0	1.0574	1	10517	10517		26.796	0	1	545560	+		82620	27585	57546	57640	91694	91694					0.05476150808715374
VDEPVMARA	9	Unmodified	_VDEPVMARA_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.288330078125	2	494.250034	986.485516	0.8657	0.00042787	2.2855	0.0011296	3.1512	0.0015575	494.2530513204722	58.763	0.58447	58.576	58.386	58.971	-0.18705					25	15	2	0	0	0	0.022484	1	6629	6629		60.972	30.654	1	142660	+		82621	29168;36188	57547	57641	91695	91695					-0.008267628425983276
VDEPVMARA	9	Unmodified	_VDEPVMARA_					0	0	0			REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant;REV__KMT2B|p.A1408Gfs*270|1|0.28|ENSG00000272333|chr19:35727538-35727539|-/G|frameshift_variant	REV__KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.250034	986.485516	-0.57905	-0.0002862	9.9304	0.0049081	9.3513	0.0046219	494.25394700460214	58.831	0.19245	58.643	58.471	58.663	-0.18795	0.06197	0.0030101	NaN	60.972	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77835	+		82622	29168;36188	57547	57641							-0.008267628425983276
VDEPVSIPI	9	Unmodified	_VDEPVSIPI_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.7691345214844	2	484.768583	967.522613	0.35653	0.00017284	-0.39928	-0.00019356	-0.042749	-2.0723E-05	484.76831097020835	80.276	0.82599	80.038	79.705	80.531	-0.23784					50	19	4	0	0	0	0.72875	1	9635	9635		44.117	1.7207	1	1321400	+		82623	26916	57548	57642	91696	91696					0.03755231974821527
VDERPRAAR	9	Unmodified	_VDERPRAAR_					0	0	0			REV__ENST00000355585.8_2_6:158402926-158403049:+|nuORF	REV__ENST00000355585.8_2_6:158402926-158403049:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2608032226562	2	535.296696	1068.57884	-0.5668	-0.0003034	3.5203	0.0018844	2.9535	0.001581	535.2982572394561	23.939	0.84901	23.759	23.356	24.205	-0.17989					33	19	3	0	0	0	0.023417	1	1041	1041		68.787	10.557	1	644520	+		82624	30777	57549	57643	91697	91697					0.04729297654853326
VDERPRAAR	9	Unmodified	_VDERPRAAR_					0	0	0			REV__ENST00000355585.8_2_6:158402926-158403049:+|nuORF	REV__ENST00000355585.8_2_6:158402926-158403049:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.296696	1068.57884	1.4383	0.00076992	1.9664	0.0010526	3.4047	0.0018225	535.297538324553	23.976	0.48905	23.795	23.582	24.072	-0.18089	-0.017186	-0.0010516	NaN	68.787	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563470	+		82625	30777	57549	57643							0.04729297654853326
VDETGTIAEN	10	Unmodified	_VDETGTIAEN_					0	0	0			REV__DTD1-RALGAPA2|1|fusion	REV__DTD1-RALGAPA2|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2781372070312	2	524.743293	1047.47203	-0.63438	-0.00033289	-4.3845	-0.0023007	-5.0188	-0.0026336	524.7408959029697	56.326	1.0316	56.169	55.499	56.53	-0.15655					57	26	3	0	0	0	0.03519	1	6143	6143		32.812	1.2826	1	521850	+		82626	19715	57550	57644	91698	91698					-0.04980342140856919
VDETRPQQP	9	Unmodified	_VDETRPQQP_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.2667846679688	2	535.26727	1068.51999	-0.61686	-0.00033018	0.99105	0.00053048	0.37419	0.00020029	535.2670148969205	48.974	3.4282	48.974	47.181	50.609	0					215	99	3	0	0	0	0.4752	1	5043	5043		60.972	4.5381	1	2488400	+		82627	22029	57551	57645	91699	91699					-0.01153223430151229
VDEVIIKVT	9	Unmodified	_VDEVIIKVT_					0	0	0			REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.30657958984375	2	508.305332	1014.59611	0.55692	0.00028309	-0.63697	-0.00032378	-0.080054	-4.0692E-05	508.30494283370876	98.387	0.79891	98.385	98.014	98.813	-0.0020752					43	18	3	0	0	0	0.14024	1	12492	12492		101.6	5.4103	1	316360	+		82628	19282	57552	57646	91700	91700					0.08939780417290422
VDEVIIKVT	9	Unmodified	_VDEVIIKVT_					0	0	0			REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.3053283691406	2	508.305332	1014.59611	0.74325	0.0003778	-1.125	-0.00057183	-0.38172	-0.00019403	508.30459137696585	98.321	1.1213	98.185	97.891	99.012	-0.13625					57	26	3	0	0	0	0.15366	1	12182	12182		98.629	8.2596	1	473070	+		82629	19282	57552	57646	91701	91701					0.08939780417290422
VDEVIIKVT	9	Unmodified	_VDEVIIKVT_					0	0	0			REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	REV__CDH7|p.E713Kfs*3|1|0.46|ENSG00000081138|chr18:65880671-65880671|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.3052978515625	2	508.305332	1014.59611	1.0561	0.00053682	-1.4285	-0.00072613	-0.37242	-0.0001893	508.3044793341435	98.299	0.80177	98.175	97.947	98.749	-0.12413					35	18	2	0	0	0	0.51687	1	12209	12209		58.23	1.5089	1	556590	+		82630	19282	57552	57646	91702	91702					0.08939780417290422
VDEVVRNAP	9	Unmodified	_VDEVVRNAP_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A;ENST00000488235.1_1_3:195969427-195975126:-|nuORF	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7884521484375	2	499.766906	997.519259	-0.43552	-0.00021766	-2.3983	-0.0011986	-2.8338	-0.0014162	499.76386448205886	21.75	0.37621	21.66	21.354	21.73	-0.090092					9	7	2	0	0	0	0.02435	1	686	686		34.173	0	1	7281.9			82631	6867	57553	57647	91703	91703					0.020399819208023473
VDEYCLQVV	9	Unmodified	_VDEYCLQVV_					0	0	0			REV__ENSG00000146385|ENST00000275200|TAAR8	REV__ENSG00000146385|ENST00000275200|TAAR8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.259033203125	2	534.257525	1066.5005	-0.44731	-0.00023898	3.1077	0.0016603	2.6604	0.0014213	534.2592292246243	66.498	1.0608	66.25	65.45	66.511	-0.24839					68	27	4	0	0	0	0.62163	1	7652	7652		51.335	5.3632	1	6256200	+		82632	24484	57554	57648	91704	91704					-0.030093157652800073
VDFGLRFF	8	Unmodified	_VDFGLRFF_					0	0	0			REV__CERS3|p.L193F|1|0.07|ENSG00000154227|chr15:100476116-100476116|T/A|missense_variant	REV__CERS3|p.L193F|1|0.07|ENSG00000154227|chr15:100476116-100476116|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2720947265625	2	500.766178	999.517802	-0.2628	-0.0001316	3.6276	0.0018166	3.3648	0.001685	501.2696802089984	39.524	0.91064	39.36	39.228	40.138	-0.16459					34	23	2	0	0	0	0.027866	1	3347	3347		40.573	0	1	178380	+		82633	19296	57555	57649	91705	91705					0.018023926227101583
VDFLLLIY	8	Unmodified	_VDFLLLIY_					0	0	0		ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	ENST00000209875.8_1_12:54630896-54631028:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.2557067871094	2	498.294236	994.57392	-0.85948	-0.00042827	-2.0117	-0.0010024	-2.8712	-0.0014307	498.29362008953586	61.992	0.71297	61.814	61.329	62.042	-0.17781					23	17	2	0	0	0	0.027866	1	6990	6990		52.299	13.493	1	208600			82634	11139	57556	57650	91706	91706					0.07641600739520982
VDFQEFISL	9	Unmodified	_VDFQEFISL_					0	0	0		ENSG00000163221|ENST00000368737|S100A12	ENSG00000163221|ENST00000368737|S100A12	ENSG00000163221|ENST00000368737|S100A12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.275634765625	2	549.279315	1096.54408	-0.89735	-0.0004929	-3.0875	-0.0016959	-3.9849	-0.0021888	549.2774662490143	46.781	0.92206	46.628	46.309	47.231	-0.15301					51	24	3	0	0	0	0.56934	1	4642	4642		54.776	7.119	1	2354700			82635	7051	57557	57651	91707	91707					-0.0003338299648021348
VDFRGKKVI	9	Unmodified	_VDFRGKKVI_					0	0	0		nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3;ENSG00000123427|ENST00000300209|EEF1AKMT3	nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3	nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.289794921875	2	531.326934	1060.63931	-0.37264	-0.00019799	3.8523	0.0020468	3.4796	0.0018488	531.3286767624946	55.4	0.301	55.184	54.967	55.268	-0.21551					10	8	2	0	0	0	0.024427	1	5931	5931		34.173	8.7224	1	266660			82636	3977	57558	57652	91708	91708					0.11142014985239257
VDFSENLFF	9	Unmodified	_VDFSENLFF_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.2777099609375	2	559.263665	1116.51278	-0.33936	-0.00018979	1.9223	0.0010751	1.5829	0.00088529	559.2642921732848	68.76	0.41728	68.76	68.52	68.938	0					16	10	2	0	0	0	0.024466	1	8222	8222		42.474	1.9018	1	107730			82637	7232	57559	57653	91709	91709					-0.040819560305635605
VDFSENLFF	9	Unmodified	_VDFSENLFF_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	559.263665	1116.51278	0.010395	5.8135E-06	2.5266	0.001413	2.537	0.0014188	559.2644596123475	68.751	0.3708	68.766	68.683	69.053	0.015129	0.0031483	0.00032657	NaN	42.474	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122840			82638	7232	57559	57653							-0.040819560305635605
VDFYLASI	8	Unmodified	_VDFYLASI_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7504577636719	2	464.244744	926.474934	0.70612	0.00032781	2.5536	0.0011855	3.2597	0.0015133	464.24578053170427	42.606	0.25746	42.632	42.459	42.717	0.026016					10	6	2	0	0	0	0.027866	1	3846	3846		31.955	0	1	125210			82639	12269	57560	57654	91710	91710					0.008755777746159765
VDGAPALNSL	10	Unmodified	_VDGAPALNSL_					0	0	0		ENSG00000197353|ENST00000359228|LYPD2	ENSG00000197353|ENST00000359228|LYPD2	ENSG00000197353|ENST00000359228|LYPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2777404785156	2	478.756007	955.497461	-0.72411	-0.00034667	1.4855	0.00071121	0.76142	0.00036453	478.75630730747105	83.555	0.4734	83.582	83.384	83.858	0.026558					16	10	3	0	0	0	0.03519	1	10367	10367		56.434	13.57	1	79605			82640	9985	57561	57655	91711	91711					0.017931771722260237
VDGAPHQTIY	10	Unmodified	_VDGAPHQTIY_					0	0	0		ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.7723999023438	2	550.772188	1099.52982	-1.0027	-0.00055224	2.0859	0.0011488	1.0832	0.00059661	550.7731470036658	48.807	1.171	48.706	48.358	49.529	-0.1008					81	30	5	0	0	0	0.69662	1	4850	4850		67.494	1.0644	1	5813400			82641	3715	57562	57656	91712	91712					-0.015960354247454234
VDGAPHQTIY	10	Unmodified	_VDGAPHQTIY_					0	0	0		ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.7731323242188	2	550.772188	1099.52982	-0.50119	-0.00027604	1.5219	0.00083824	1.0208	0.0005622	550.7728657741285	49.088	0.77874	48.809	48.501	49.28	-0.27977					72	20	5	0	0	0	0.45418	2	4893	4882;4893		93.143	5.9763	1	6108900			82642	3715	57562	57656	91713;91714	91714					-0.015960354247454234
VDGAPHQTIY	10	Unmodified	_VDGAPHQTIY_					0	0	0		ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	ENSG00000118972|ENST00000237837|FGF23	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.77294921875	2	550.772188	1099.52982	-0.35104	-0.00019334	1.2391	0.00068249	0.88811	0.00048914	550.7727478599835	48.949	0.74455	48.767	48.408	49.153	-0.18206					71	19	5	0	0	0	0.59716	1	4865	4865		77.318	0.54344	1	6122000			82643	3715	57562	57656	91715	91715					-0.015960354247454234
VDGKEFNLE	9	Unmodified	_VDGKEFNLE_					0	0	0			REV__NCK1-STAG1|1|fusion	REV__NCK1-STAG1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.7948608398438	2	525.758746	1049.50294	-0.37589	-0.00019763	3.1465	0.0016543	2.7706	0.0014567	525.7596528308613	36.298	0.54791	36.336	35.997	36.545	0.03804					29	15	3	0	0	0	0.024477	1	2785	2785		44.117	6.9577	1	207470	+		82644	37265	57563	57657	91716	91716					-0.019831440359666885
VDGLMCIYL	9	Carbamidomethyl (C),Oxidation (M)	_VDGLM(Oxidation (M))C(Carbamidomethyl (C))IYL_	VDGLMC(1)IYL	VDGLM(1)CIYL	VDGLMC(60)IYL	VDGLM(60)CIYL	0	1	1			REV__PDE7A|p.R64C|1|0.42|ENSG00000205268|chr8:65782792-65782792|G/A|missense_variant	REV__PDE7A|p.R64C|1|0.42|ENSG00000205268|chr8:65782792-65782792|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2556762695312	2	550.261753	1098.50895	0.1473	8.1055E-05	-0.18871	-0.00010384	-0.041409	-2.2786E-05	550.2614914202358	91.431	1.3494	91.291	90.943	92.292	-0.13942					75	31	3	0	0	0	0.4855	1	11188	11188		60.294	6.9425	1	2815800	+		82645	37365	57564	57658	91717	91717	481	986			-0.03636085120297139
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.2766723632812	2	569.278457	1136.54236	-1.0327	-0.00058791	-2.3434	-0.001334	-3.3761	-0.001922	569.2769368352411	79.556	2.6287	79.556	79.201	81.83	0					198	63	4	0	0	0	0.42446	3	9867	9867;9879;9960		96.19	35.218	1	2608600	+		82646	32182	57565	57659	91718;91719;91720	91718					-0.020447600767283802
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.2770385742188	2	569.278457	1136.54236	-0.96243	-0.00054789	-1.8487	-0.0010524	-2.8111	-0.0016003	569.2772724119607	82.436	2.25	82.436	81.791	84.041	0					133	52	4	0	0	0	0.60198	3	10288	10277;10288;10299		76.774	14.667	1	1615000	+		82647	32182	57565	57659	91721;91722;91723	91722					-0.020447600767283802
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.27685546875	2	569.278457	1136.54236	-1.108	-0.00063075	-2.0889	-0.0011892	-3.1969	-0.0018199	569.2769780262627	79.841	2.7082	79.669	79.15	81.858	-0.17225					169	65	4	0	0	0	0.71272	6	9880	9868;9880;9943;9954;10021;10033		66.429	5.3856	1	2401400	+		82648	32182	57565	57659	91724;91725;91726;91727;91728;91729	91725					-0.020447600767283802
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.2764892578125	2	569.278457	1136.54236	1.3076	0.00074441	-4.0423	-0.0023012	-2.7346	-0.0015568	569.275995448091	82.585	1.8247	82.475	81.881	83.706	-0.11006					111	42	4	0	0	0	0.60198	2	10271	10271;10282		76.774	13.078	1	1661300	+		82649	32182	57565	57659	91730;91731	91730					-0.020447600767283802
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.2764282226562	2	569.278457	1136.54236	-1.0669	-0.00060736	-2.0432	-0.0011631	-3.11	-0.0017705	569.2771577721113	79.614	2.4603	79.633	79.233	81.693	0.018669					115	59	4	0	0	0	0.60198	1	9791	9791		76.774	5.9579	1	2642900	+		82650	32182	57565	57659	91732	91732					-0.020447600767283802
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.2766723632812	2	569.278457	1136.54236	-1.0894	-0.00062019	-1.6346	-0.00093052	-2.724	-0.0015507	569.2773502290091	82.352	2.2873	82.378	81.7	83.987	0.025711					132	53	4	0	0	0	0.50466	3	10219	10196;10219;10242		87.754	13.499	1	1981700	+		82651	32182	57565	57659	91733;91734;91735	91734					-0.020447600767283802
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2826538085938	2	569.278457	1136.54236	0.63156	0.00035954	-0.51472	-0.00029302	0.11684	6.6514E-05	569.2765907642538	82.705	1.4251	82.485	82.043	83.468	-0.22016					98	32	5	0	0	0	0.85955	1	10017	10017		56.721	3.7844	1	789050	+		82652	32182	57565	57659	91736	91736					-0.020447600767283802
VDGMLDLFLD	10	Unmodified	_VDGMLDLFLD_					0	0	0			REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	REV__ENST00000421606.6_2_16:55801397-55827869:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2860717773438	2	569.278457	1136.54236	-0.38749	-0.00022059	-1.1072	-0.0006303	-1.4947	-0.00085089	569.2773055914291	83.06	1.3771	82.921	82.088	83.465	-0.1386					94	31	4	0	0	0	0.71272	1	10009	10009		66.429	11.665	1	969920	+		82653	32182	57565	57659	91737	91737					-0.020447600767283802
VDGPYPNN	8	Unmodified	_VDGPYPNN_					0	0	0			REV__nc|ENSG00000137073|Q5T6F2-2|UBAP2	REV__nc|ENSG00000137073|Q5T6F2-2|UBAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.21954345703125	2	438.198325	874.382096	0.076139	3.3364E-05	0.63699	0.00027913	0.71313	0.00031249	438.1985257965579	44.797	0.56007	44.833	44.612	45.173	0.0369					27	15	2	0	0	0	0.027866	1	4235	4235		24.203	0	1	376130	+		82654	23721	57566	57660	91738	91738					-0.0601192695876307
VDGRNFSKW	9	Unmodified	_VDGRNFSKW_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.2643432617188	2	554.780348	1107.54614	-0.27296	-0.00015143	-0.64665	-0.00035875	-0.91961	-0.00051018	555.2803916991626	32.007	0.39924	32.007	31.749	32.149	0					12	9	2	0	0	0	0.024477	1	2186	2186		44.117	25.013	1	49626	+		82655	22949	57567	57661	91739	91739					-0.003329094680111666
VDGRNFSKW	9	Unmodified	_VDGRNFSKW_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.2642211914062	2	554.780348	1107.54614	-0.60024	-0.000333	2.125	0.0011789	1.5248	0.00084593	554.7814442708955	31.838	0.59964	31.85	31.424	32.023	0.011797					18	14	2	0	0	0	0.024495	1	2135	2135		42.396	16.822	1	56143	+		82656	22949	57567	57661	91740	91740					-0.003329094680111666
VDGTRNKPQ	9	Unmodified	_VDGTRNKPQ_					0	0	0			REV__ENSG00000213949|ENST00000282588|ITGA1	REV__ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8418273925781	2	507.76998	1013.52541	-0.50214	-0.00025497	-3.8293	-0.0019444	-4.3315	-0.0021994	507.76789890340876	65.311	0.51356	65.311	65.091	65.605	0					23	14	2	0	0	0	0.024457	1	7776	7776		29.15	11.785	1	194750	+		82657	28759	57568	57662	91741	91741					0.019185001523283063
VDGVLLVVL	9	Unmodified	_VDGVLLVVL_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.8000183105469	2	463.799686	925.584819	0.80673	0.00037416	-0.39423	-0.00018285	0.4125	0.00019132	463.7993651467069	103.04	1.7183	103.04	102.79	104.51	-0.0046005					75	41	3	0	0	0	0.90698	1	13148	13148		31.955	1.4512	1	829060			82658	5361	57569	57663	91742	91742					0.11905003113804469
VDHKTKNW	8	Unmodified	_VDHKTKNW_					0	0	0			REV__ENSG00000103353|ENST00000395878|UBFD1	REV__ENSG00000103353|ENST00000395878|UBFD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.2939453125	2	514.269616	1026.52468	-0.034751	-1.7871E-05	4.267	0.0021944	4.2322	0.0021765	514.2716107492113	70.414	0.4633	70.157	69.976	70.439	-0.25713					15	12	2	0	0	0	0.027866	1	8227	8227		53.351	0	1	667600	+		82659	21380	57570	57664	91743	91743					0.01247705503283214
VDHKTKNW	8	Unmodified	_VDHKTKNW_					0	0	0			REV__ENSG00000103353|ENST00000395878|UBFD1	REV__ENSG00000103353|ENST00000395878|UBFD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2952880859375	2	514.269616	1026.52468	0.30631	0.00015752	4.3785	0.0022517	4.6848	0.0024092	514.2716452875869	70.422	0.40024	70.207	69.977	70.377	-0.21425					17	10	3	0	0	0	0.027866	1	8177	8177		44.117	0	1	1160600	+		82660	21380	57570	57664	91744	91744					0.01247705503283214
VDHTNLSR	8	Unmodified	_VDHTNLSR_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.2456970214844	2	471.243598	940.472643	0.28424	0.00013395	3.7218	0.0017539	4.006	0.0018878	471.2451444515998	47.231	1.0126	46.961	46.695	47.708	-0.26939					67	27	4	0	0	0	0.89627	1	4597	4597		51.335	0	1	3069500	+		82661	23141	57571	57665	91745	91745					2.5420895326533355E-05
VDHVIVTEI	9	Unmodified	_VDHVIVTEI_					0	0	0		ENST00000331585.6_1_2:196447906-196448179:-|nuORF	ENST00000331585.6_1_2:196447906-196448179:-|nuORF	ENST00000331585.6_1_2:196447906-196448179:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.7870483398438	2	512.787307	1023.56006	0.68684	0.0003522	-1.2401	-0.00063591	-0.55327	-0.00028371	512.7867245104212	71.421	2.5325	71.132	70.459	72.992	-0.28858					132	63	5	0	0	0	0.29104	1	8589	8589		76.847	8.0598	1	32469000			82662	12346	57572	57666	91746	91746					0.04922323240418791
VDHVIVTEI	9	Unmodified	_VDHVIVTEI_					0	0	0		ENST00000331585.6_1_2:196447906-196448179:-|nuORF	ENST00000331585.6_1_2:196447906-196448179:-|nuORF	ENST00000331585.6_1_2:196447906-196448179:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7883911132812	2	512.787307	1023.56006	0.65295	0.00033482	-0.99474	-0.00051009	-0.3418	-0.00017527	512.7866985631875	71.191	0.7561	70.985	70.703	71.459	-0.20613					45	17	3	0	0	0	0.29104	2	8307	8295;8307		76.847	0	1	5124400			82663	12346	57572	57666	91747;91748	91748					0.04922323240418791
VDHVYCPPY	9	Unmodified	_VDHVYCPPY_					0	0	0			REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3035278320312	2	546.744585	1091.47462	-0.21114	-0.00011544	2.6725	0.0014612	2.4614	0.0013457	546.7458239535637	37.548	0.35613	37.355	37.152	37.508	-0.193					25	8	4	0	0	0	0.024436	1	3006	3006		38.806	0	1	228920	+		82664	29069	57573	57667	91749	91749					-0.06746165216895861
VDICQWHYF	9	Unmodified	_VDICQWHYF_					0	0	0			REV__nc|ENSG00000167280|Q8NFI3-2|ENGASE	REV__nc|ENSG00000167280|Q8NFI3-2|ENGASE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	606.2787475585938	2	605.771134	1209.52771	-0.87206	-0.00052827	3.6621	0.0022184	2.7901	0.0016901	605.7730300585715	58.112	0.68253	57.935	57.636	58.318	-0.17775					27	16	2	0	0	0	0.40179	1	6365	6365		65.803	21.426	1	2691300	+		82665	26123	57574	57668	91750	91750					-0.06866787434228172
VDICQWHYF	9	Unmodified	_VDICQWHYF_					0	0	0			REV__nc|ENSG00000167280|Q8NFI3-2|ENGASE	REV__nc|ENSG00000167280|Q8NFI3-2|ENGASE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.7693481445312	2	605.771134	1209.52771	-0.13178	-7.9826E-05	2.9177	0.0017675	2.7859	0.0016876	605.7726182526892	58.16	0.68563	57.927	57.664	58.349	-0.23363					37	16	3	0	0	0	0.67308	1	6372	6372		47.916	1.9434	1	2499500	+		82666	26123	57574	57668	91751	91751					-0.06866787434228172
VDIDNQYGFE	10	Unmodified	_VDIDNQYGFE_					0	0	0			REV__nc|ENSG00000114487|Q86VD1-2|MORC1	REV__nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	600.3004760742188	2	600.264393	1198.51423	-0.8837	-0.00053045	-1.9106	-0.0011469	-2.7943	-0.0016773	600.2623463184533	60.825	0.19645	60.571	60.463	60.66	-0.25373					6	4	2	0	0	0	0.03519	1	6773	6773		15.642	0	1	48145	+		82667	22126	57575	57669	91752	91752					-0.07708366732458671
VDIGLLIESL	10	Unmodified	_VDIGLLIESL_					0	0	0		ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.808349609375	2	536.31844	1070.62233	-1.1404	-0.00061164	-0.11943	-6.4051E-05	-1.2599	-0.00067569	536.3187584294133	85.114	0.24705	85.14	84.953	85.2	0.025528					8	5	2	0	0	0	0.03519	1	10579	10579		24.519	0	1	74076			82668	5678	57576	57670	91753	91753					0.08984049588775633
VDIIPGAWRSV	11	Unmodified	_VDIIPGAWRSV_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9229431152344	3	404.896029	1211.66626	0.50708	0.00020531	3.8586	0.0015623	4.3657	0.0017676	404.8975908203997	26.527	0.16141	26.359	26.301	26.462	-0.16816					5	3	2	0	0	0	0.024741	1	1383	1383		21.032	0.71722	1	39675	+		82669	19175	57577	57671	91754	91754					0.06889078805738791
VDIKLFFVPYL	11	Unmodified	_VDIKLFFVPYL_					0	0	0			REV__nc|ENSG00000064933|P54277-4|PMS1	REV__nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9322814941406	3	451.93208	1352.77441	0.95574	0.00043193	0.53022	0.00023962	1.486	0.00067155	451.93215521600763	97.035	2.3592	96.912	95.552	97.912	-0.12368					183	54	5	0	0	0	1.0739	1	12131	12131		18.531	2.0012	1	477030	+		82670	20296	57578	57672	91755	91755					0.1121345033632224
VDILLIETI	9	Unmodified	_VDILLIETI_					0	0	0		ENSG00000116984|ENST00000366577|MTR;nc|ENSG00000116984|Q99707-2|MTR	ENSG00000116984|ENST00000366577|MTR	ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.79296875	2	514.815533	1027.61651	0.10635	5.4749E-05	3.5353	0.00182	3.6417	0.0018748	514.8161278859624	71.778	0.84212	71.503	71.188	72.03	-0.27509					62	20	4	0	0	0	0.024405	1	8416	8416		44.117	1.7207	1	1220000			82671	3598	57579	57673	91756	91756					0.10380951077104328
VDILLSATY	9	Unmodified	_VDILLSATY_					0	0	0			REV__ENST00000491881.1_1_6:142491486-142519763:+|nuORF	REV__ENST00000491881.1_1_6:142491486-142519763:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.77471923828125	2	497.776408	993.538263	-0.1595	-7.9396E-05	-3.0482	-0.0015173	-3.2077	-0.0015967	497.77493450857236	100.88	0.98188	100.89	100.58	101.56	0.0090332					51	22	4	0	0	0	0.25032	1	12859	12859		82.305	0	1	662100	+		82672	19897	57580	57674	91757	91757					0.04123518491849154
VDILPVET	8	Unmodified	_VDILPVET_					0	0	0		ENSG00000139835|ENST00000375431|GRTP1;nc|ENSG00000139835|Q5TC63-3|GRTP1;nc|ENSG00000139835|Q5TC63-2|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.4970703125	2	443.250026	884.485499	-0.88096	-0.00039049	-2.5584	-0.001134	-3.4394	-0.0015245	443.2490303779779	29.599	0.72756	29.354	28.967	29.695	-0.24524					34	16	3	0	0	0	0.027866	1	1801	1801		17.365	0	1	323390			82673	5371	57581	57675	91758	91758					0.03863560429056179
VDILYRCI	8	Unmodified	_VDILYRCI_					0	0	0			REV__ENSG00000144048|ENST00000272444|DUSP11	REV__ENSG00000144048|ENST00000272444|DUSP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.77496337890625	2	497.773145	993.531738	0.38265	0.00019047	2.7993	0.0013934	3.1819	0.0015839	497.77461153467283	100.88	0.9181	100.87	100.62	101.53	-0.0054474					46	21	4	0	0	0	0.68535	1	12853	12853		68.485	2.6815	1	953960	+		82674	24311	57582	57676	91759	91759					0.03471302059483605
VDIMFIVDI	9	Unmodified	_VDIMFIVDI_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2;nc|ENSG00000055118|Q12809-6|KCNH2;nc|ENSG00000055118|Q12809-2|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF;ENST00000461280.1_1_7:150646989-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2;ENST00000473610.5_1_7:150648470-150652738:-|nuORF	nc|ENSG00000055118|Q12809-5|KCNH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2821044921875	2	532.788461	1063.56237	0.2147	0.00011439	2.295	0.0012228	2.5097	0.0013372	532.7898447783971	54.417	0.50881	54.515	54.225	54.733	0.098015					20	14	2	0	0	0	0.024477	1	5833	5833		35.618	7.736	1	1197500			82675	1184;14680	57583	57677	91760	91760					0.03313035653877705
VDINDPHKY	9	Unmodified	_VDINDPHKY_					0	0	0			REV__nc|ENSG00000115705|P07202-5|TPO	REV__nc|ENSG00000115705|P07202-5|TPO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.77197265625	2	550.772188	1099.52982	-1.0027	-0.00055224	2.0859	0.0011488	1.0832	0.00059661	550.7731470036658	48.807	1.171	48.706	48.358	49.529	-0.1008					81	30	5	0	0	0	0.2508	1	4861	4861		82.241	7.9855	1	5813400	+		82676	22227	57584	57678	91761	91761					-0.015960354247454234
VDINDPHKY	9	Unmodified	_VDINDPHKY_					0	0	0			REV__nc|ENSG00000115705|P07202-5|TPO	REV__nc|ENSG00000115705|P07202-5|TPO	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.7723388671875	2	550.772188	1099.52982	-0.35104	-0.00019334	1.2391	0.00068249	0.88811	0.00048914	550.7727478599835	48.949	0.74455	48.767	48.408	49.153	-0.18206					71	19	5	0	0	0	0.29158	1	4877	4877		76.774	5.4784	1	6122000	+		82677	22227	57584	57678	91762	91762					-0.015960354247454234
VDIQKSLQL	9	Unmodified	_VDIQKSLQL_					0	0	0		NALCN|p.R1545Q|1|0.22|ENSG00000102452|chr13:101062089-101062089|C/T|missense_variant	NALCN|p.R1545Q|1|0.22|ENSG00000102452|chr13:101062089-101062089|C/T|missense_variant	NALCN|p.R1545Q|1|0.22|ENSG00000102452|chr13:101062089-101062089|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3101196289062	2	522.308406	1042.60226	-0.67296	-0.00035149	-1.9133	-0.00099935	-2.5863	-0.0013508	522.3071687495956	32.324	0.86607	32.336	32.144	33.01	0.011799					55	22	4	0	0	0	0.26966	1	2205	2205		79.713	2.395	1	2360400			82678	18021	57585	57679	91763	91763					0.08266298648823067
VDITPHLDL	9	Unmodified	_VDITPHLDL_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.78009033203125	2	511.779482	1021.54441	-0.47707	-0.00024415	1.474	0.00075436	0.99692	0.0005102	511.7802780537528	92.908	0.93394	92.903	92.604	93.538	-0.0042038					51	21	3	0	0	0	0.43973	1	11760	11760		63.306	6.5852	1	710830	+		82679	26582	57586	57680	91764	91764					0.034500367233818
VDITPHLDL	9	Unmodified	_VDITPHLDL_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	511.779482	1021.54441	-0.47707	-0.00024415	1.474	0.00075436	0.99692	0.0005102	511.7802780537528	92.908	0.93394	92.903	92.604	93.538	-0.0042038	0.040927	-0.00019195	NaN	63.306	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710830	+		82680	26582	57586	57680							0.034500367233818
VDITPHLDL	9	Unmodified	_VDITPHLDL_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.779482	1021.54441	-1.6042	-0.00082101	3.5072	0.0017949	1.903	0.0009739	511.7811212898784	92.868	0.60016	92.725	92.488	93.088	-0.14356	-0.13778	0.0018892	NaN	63.306	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143840	+		82681	26582	57586	57680							0.034500367233818
VDITPHLDL	9	Unmodified	_VDITPHLDL_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.779482	1021.54441	-0.13539	-6.9291E-05	1.7837	0.00091285	1.6483	0.00084356	511.78025350337174	92.886	0.68059	92.763	92.423	93.103	-0.12242	-0.099084	0.00012504	NaN	63.306	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175830	+		82682	26582	57586	57680							0.034500367233818
VDITPHLDL	9	Unmodified	_VDITPHLDL_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.779482	1021.54441	-0.0045103	-2.3083E-06	1.3627	0.00069741	1.3582	0.00069511	511.7802086923469	92.959	0.55698	92.815	92.576	93.133	-0.1441	-0.047826	-0.00030584	NaN	63.306	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145350	+		82683	26582	57586	57680							0.034500367233818
VDKDQSLQL	9	Unmodified	_VDKDQSLQL_					0	0	0		nc|ENSG00000239605|Q8N801-2|STPG4;ENSG00000239605|ENST00000445927|STPG4	nc|ENSG00000239605|Q8N801-2|STPG4	nc|ENSG00000239605|Q8N801-2|STPG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3004150390625	2	523.279846	1044.54514	-0.71059	-0.00037184	1.9574	0.0010243	1.2468	0.00065244	523.2809258622954	52.13	1.0612	52.13	51.803	52.864	0					38	27	2	0	0	0	0.018452	1	5570	5570		134.81	25.332	1	1439100			82684	10760	57587	57681	91765	91765					0.02464831372435583
VDKETLQSF	9	Unmodified	_VDKETLQSF_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7742309570312	2	533.774396	1065.53424	-0.53891	-0.00028766	0.35791	0.00019104	-0.181	-9.6614E-05	533.7745057007689	50.856	1.1847	50.707	50.39	51.575	-0.14916					94	33	4	0	0	0	0.30449	1	5319	5319		75.043	1.0686	1	12060000	+		82685	20119	57588	57682	91766	91766					0.004094289981367183
VDKETLQSI	9	Unmodified	_VDKETLQSI_					0	0	0			REV__chr1:153345370-153346102|466|17.2|0.53|5.02|-|2|PGLYRP4,PGLYRP4|1	REV__chr1:153345370-153346102|466|17.2|0.53|5.02|-|2|PGLYRP4,PGLYRP4|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.7847900390625	2	516.782222	1031.54989	-0.2569	-0.00013276	3.9186	0.0020251	3.6617	0.0018923	516.7841270902311	94.105	1.5772	94.105	93.645	95.222	0					106	37	4	0	0	0	0.12914	1	11993	11993		104.06	2.4561	1	6750500	+		82686	19312	57589	57683	91767	91767					0.035377155151991246
VDKHFDVL	8	Unmodified	_VDKHFDVL_					0	0	0		chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5	chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5	chr8:127290060-127311835|129|17.6|0.0|12.04|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.75921630859375	2	486.761092	971.507631	-0.42773	-0.0002082	-3.9739	-0.0019343	-4.4016	-0.0021425	486.7591111495507	37.395	1.1613	37.427	37.074	38.235	0.032269					69	31	4	0	0	0	0.81662	1	3012	3012		57.811	1.0902	1	13073000			82687	431	57590	57684	91768	91768					0.02073784897470432
VDKHLQVDEK	10	Unmodified	_VDKHLQVDEK_					0	0	0			REV__ENSG00000170160|ENST00000399273|CCDC144A	REV__ENSG00000170160|ENST00000399273|CCDC144A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.21881103515625	3	404.21906	1209.63535	1.0514	0.00042499	-3.0962	-0.0012515	-2.0448	-0.00082655	404.21777515581726	57.25	1.112	57.048	56.747	57.859	-0.20208					101	29	5	0	0	0	1.0816	1	6226	6226		35.152	2.3396	1	15287000	+		82688	26438	57591	57685	91769	91769					0.03891880700825823
VDKKELWH	8	Unmodified	_VDKKELWH_					0	0	0			REV__nc|ENSG00000140612|P67812-4|SEC11A	REV__nc|ENSG00000140612|P67812-4|SEC11A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7694091796875	2	527.787641	1053.56073	-0.73609	-0.0003885	2.8882	0.0015244	2.1521	0.0011359	527.7900355173928	53.47	0.31742	53.47	53.337	53.655	0					12	8	2	0	0	0	0.027866	1	5776	5776		60.972	0	1	77774	+		82689	36718	57592	57686	91770	91770					0.03609162680118061
VDKKELWH	8	Unmodified	_VDKKELWH_					0	0	0			REV__nc|ENSG00000140612|P67812-4|SEC11A	REV__nc|ENSG00000140612|P67812-4|SEC11A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	527.787641	1053.56073	-0.46832	-0.00024717	1.9495	0.0010289	1.4812	0.00078175	527.7887125806693	53.919	0.3521	53.771	53.602	53.954	-0.14723	0.15052	-0.00028102	NaN	60.972	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191400	+		82690	36718	57592	57686							0.03609162680118061
VDKKKQALI	9	Unmodified	_VDKKKQALI_					0	0	0			REV__nc|ENSG00000104067|Q07157|TJP1	REV__nc|ENSG00000104067|Q07157|TJP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8341674804688	2	521.834591	1041.65463	-0.57935	-0.00030232	-0.0052191	-2.7235E-06	-0.58457	-0.00030505	521.834532631446	69.308	1.0601	69.323	68.974	70.034	0.015129					68	26	3	0	0	0	0.45795	1	8292	8292		62.107	3.8775	1	4382800	+		82691	21416	57593	57687	91771	91771					0.13546881782417586
VDKLQFEP	8	Unmodified	_VDKLQFEP_					0	0	0		ENST00000554990.5_1_14:50886739-50915587:-|nuORF	ENST00000554990.5_1_14:50886739-50915587:-|nuORF	ENST00000554990.5_1_14:50886739-50915587:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2610168457031	2	488.260925	974.507297	-0.78072	-0.00038119	1.3915	0.00067944	0.61083	0.00029825	488.2614123261354	69.375	0.97741	69.39	68.937	69.914	0.015121					57	24	4	0	0	0	0.845	1	8283	8283		55.504	2.1528	1	1222000			82692	16667	57594	57688	91772	91772					0.01902365177613774
VDKMKKLAE	9	Unmodified	_VDKMKKLAE_					0	0	0			REV__ENST00000600677.5_1_19:6744980-6751219:+|nuORF	REV__ENST00000600677.5_1_19:6744980-6751219:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.3052368164062	2	531.30481	1060.59507	-0.59219	-0.00031463	0.23868	0.00012681	-0.35351	-0.00018782	531.3048332996739	47.974	0.73618	47.876	47.52	48.257	-0.097553					44	19	3	0	0	0	0.15366	1	4742	4742		98.629	2.8142	1	2685500	+		82693	22837	57595	57689	91773	91773					0.0671924277673952
VDKNIISYYF	10	Unmodified	_VDKNIISYYF_					0	0	0		ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	ENSG00000280314|ENST00000641662|OR8K3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	421.220703125	3	421.22029	1260.63904	-0.12759	-5.3745E-05	0.69976	0.00029475	0.57217	0.00024101	421.22056498337747	56.512	0.7525	56.345	55.962	56.714	-0.1672					54	18	4	0	0	0	0.99657	1	6133	6133		46.457	0.54867	1	2963100			82694	11080	57596	57690	91774	91774					0.019145504747029918
VDKRLAGLTL	10	Unmodified	_VDKRLAGLTL_					0	0	0		ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3196411132812	2	543.337498	1084.66044	-1.31	-0.00071177	0.39777	0.00021612	-0.91223	-0.00049565	543.3375492602507	64.676	1.1291	64.676	64.097	65.226	0					69	30	4	0	0	0	0.03519	1	7589	7589		23.523	0	1	2368000			82695	8166	57597	57691	91775	91775					0.12149980294088891
VDKRLAGLTL	10	Unmodified	_VDKRLAGLTL_					0	0	0		ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	543.337498	1084.66044	-2.0134	-0.0010939	0.99729	0.00054186	-1.0161	-0.00055207	543.3378392287661	65.042	0.8401	64.779	64.532	65.372	-0.2626	-0.0018785	0.00036027	NaN	49.536	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3248400			82696	8166	57597	57691							0.12149980294088891
VDKRLAGLTL	10	Unmodified	_VDKRLAGLTL_					0	0	0		ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	ENSG00000171522|ENST00000302472|PTGER4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.337498	1084.66044	-1.288	-0.00069981	0.68167	0.00037038	-0.6063	-0.00032943	543.3376778517959	64.85	0.82742	64.888	64.595	65.422	0.037384	0.1066	1.7297E-05	NaN	49.536	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2485100			82697	8166	57597	57691							0.12149980294088891
VDKTKKKY	8	Unmodified	_VDKTKKKY_					0	0	0		ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.258544921875	2	505.305667	1008.59678	-0.014357	-7.2544E-06	-0.40528	-0.00020479	-0.41963	-0.00021204	505.3052806713781	40.89	0.60106	40.89	40.657	41.258	0					29	16	2	0	0	0	0.027866	1	3653	3653		31.955	5.2619	1	320600			82698	6432	57598	57692	91776	91776					0.09282619856981
VDKYFVAY	8	Unmodified	_VDKYFVAY_					0	0	0			REV__ENSG00000203972|ENST00000371197|GLYATL3	REV__ENSG00000203972|ENST00000371197|GLYATL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.28204345703125	2	502.758018	1003.50148	-0.61106	-0.00030721	2.3541	0.0011835	1.743	0.00087632	503.2610992774692	51.39	0.34875	51.114	51.004	51.353	-0.27643					12	8	2	0	0	0	0.027866	1	5302	5302		33.516	5.6333	1	59064	+		82699	28556	57599	57693	91777	91777					-0.00012733334051517886
VDKYFVAY	8	Unmodified	_VDKYFVAY_					0	0	0			REV__ENSG00000203972|ENST00000371197|GLYATL3	REV__ENSG00000203972|ENST00000371197|GLYATL3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.758018	1003.50148	0.71081	0.00035737	0.45363	0.00022806	1.1644	0.00058543	503.2606126997437	51.297	0.31376	51.116	50.908	51.222	-0.18071	0.001324	-0.00093185	NaN	33.516	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78381	+		82700	28556	57599	57693							-0.00012733334051517886
VDLAHQGVR	9	Unmodified	_VDLAHQGVR_					0	0	0		nc|ENSG00000125618|Q06710-2|PAX8;ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-5|PAX8;nc|ENSG00000125618|Q06710-4|PAX8;nc|ENSG00000125618|Q06710-3|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.7748107910156	2	497.775065	993.535577	0.31474	0.00015667	-1.1873	-0.00059101	-0.87257	-0.00043434	497.77466424727845	100.84	1.0196	100.84	100.53	101.55	0					54	23	3	0	0	0	0.53979	1	12895	12895		56.721	1.2168	1	849760			82701	4120	57600	57694	91778	91778					0.03855107877575392
VDLAHQGVR	9	Unmodified	_VDLAHQGVR_					0	0	0		nc|ENSG00000125618|Q06710-2|PAX8;ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-5|PAX8;nc|ENSG00000125618|Q06710-4|PAX8;nc|ENSG00000125618|Q06710-3|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7751159667969	2	497.775065	993.535577	0.38265	0.00019047	-1.0577	-0.00052651	-0.67507	-0.00033604	497.77461153467283	100.88	0.9181	100.87	100.62	101.53	-0.0054474					46	21	4	0	0	0	0.35646	1	12827	12827		68.787	2.9837	1	953960			82702	4120	57600	57694	91779	91779					0.03855107877575392
VDLAHQGVR	9	Unmodified	_VDLAHQGVR_					0	0	0		nc|ENSG00000125618|Q06710-2|PAX8;ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-5|PAX8;nc|ENSG00000125618|Q06710-4|PAX8;nc|ENSG00000125618|Q06710-3|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	nc|ENSG00000125618|Q06710-2|PAX8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.77520751953125	2	497.775065	993.535577	0.38742	0.00019285	-0.58383	-0.00029062	-0.19641	-9.7768E-05	497.7747674784176	100.81	1.1712	100.67	100.46	101.63	-0.13364					54	28	3	0	0	0	0.42604	1	12512	12512		64.207	5.4253	1	642740			82703	4120	57600	57694	91780	91780					0.03855107877575392
VDLDGPSLGPP	11	Unmodified	_VDLDGPSLGPP_					0	0	0			REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.774658203125	2	533.774396	1065.53424	-0.60224	-0.00032146	1.036	0.00055302	0.43381	0.00023155	533.7745829780545	84.276	1.5497	84.276	83.823	85.372	0					98	36	4	0	0	0	0.25842	1	10559	10559		93.195	2.5946	1	2544700	+		82704	23253	57601	57695	91781	91781					0.004094289981594557
VDLERTIAL	9	Unmodified	_VDLERTIAL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2970581054688	2	515.300581	1028.58661	-1.1243	-0.00057934	-0.91274	-0.00047033	-2.037	-0.0010497	515.300031937481	62.489	0.5605	62.249	61.932	62.492	-0.23926					30	17	2	0	0	0	0.18915	1	7244	7244		90.777	5.8611	1	5590100			82705	2521	57602	57696	91782	91782					0.07346012131756652
VDLERTIAL	9	Unmodified	_VDLERTIAL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.299072265625	2	515.300581	1028.58661	-1.604	-0.00082652	-0.56436	-0.00029081	-2.1683	-0.0011173	515.3001094362164	62.224	0.61223	62.287	61.912	62.524	0.062767					28	16	2	0	0	0	0.39228	1	7142	7142		66.429	7.6473	1	5638500			82706	2521	57602	57696	91783	91783					0.07346012131756652
VDLERTIAL	9	Unmodified	_VDLERTIAL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.T2659Afs*18|1|0.09|ENSG00000103657|chr15:63672567-63672568|-/CA|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	515.300581	1028.58661	-0.78093	-0.00040242	-0.74083	-0.00038175	-1.5218	-0.00078417	515.3001078838886	62.425	0.55283	62.247	61.883	62.435	-0.17781	-0.02019	7.3764E-05	NaN	90.777	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7810900			82707	2521	57602	57696							0.07346012131756652
VDLGIPLEL	9	Unmodified	_VDLGIPLEL_					0	0	0		ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	ENSG00000166997|ENST00000262932|CNPY4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.8798522949219	2	484.786776	967.558998	-0.70033	-0.00033951	3.2343	0.0015679	2.534	0.0012284	484.7878887316043	44.102	1.0726	43.883	43.176	44.249	-0.21939					42	29	2	0	0	0	0.024436	1	4045	4045		16.473	0	1	952910			82708	7640	57603	57697	91784	91784					0.07392108871522396
VDLIDAIQPG	10	Unmodified	_VDLIDAIQPG_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.7843627929688	2	520.784764	1039.55498	0.26776	0.00013944	-1.2734	-0.00066318	-1.0057	-0.00052373	520.7839534325605	106.38	2.0666	106.38	105.36	107.43	0					149	67	4	0	0	0	1.1307	1	13655	13655		26.693	0	1	6875800			82709	2372	57604	57698	91785	91785					0.036780193777985914
VDLIDAIQPG	10	Unmodified	_VDLIDAIQPG_					0	0	0		nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3	nc|ENSG00000102024|P13797-3|PLS3	nc|ENSG00000102024|P13797-3|PLS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7841186523438	2	520.784764	1039.55498	0.7045	0.00036689	-1.8684	-0.00097301	-1.1639	-0.00060612	520.7836765092428	106.97	0.83977	106.81	106.46	107.3	-0.15771					117	34	4	0	0	0	1.1307	1	13264	13264		26.693	1.1189	1	3641400			82710	2372	57604	57698	91786	91786					0.036780193777985914
VDLKELAFL	9	Unmodified	_VDLKELAFL_					0	0	0			REV__ENSG00000111203|ENST00000228799|ITFG2	REV__ENSG00000111203|ENST00000228799|ITFG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.3058471679688	2	524.307875	1046.6012	-0.014905	-7.815E-06	-2.786	-0.0014607	-2.8009	-0.0014685	524.305984370498	71.688	1.74	71.413	71.188	72.928	-0.27509					105	41	5	0	0	0	0.4752	1	8357	8357		60.972	2.19	1	10472000	+		82711	21899	57605	57699	91787	91787					0.07976084279903262
VDLLQVLAR	9	Unmodified	_VDLLQVLAR_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1;AP5B1|p.C829Lfs*32|1|0.48|ENSG00000254470|chr11:65778008-65778009|-/G|frameshift_variant;ENST00000316846.2_11:65545618-65547282:-|nuORF	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7538452148438	2	513.818941	1025.62333	-0.48516	-0.00024928	-0.26564	-0.00013649	-0.7508	-0.00038577	513.8187968638016	50.627	1.002	50.627	50.21	51.212	0					60	28	3	0	0	0	0.024539	1	5357	5357		14.865	0	1	1740100			82712	102	57606	57700	91788	91788					0.11154308748336916
VDLLRQSL	8	Unmodified	_VDLLRQSL_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.7523193359375	2	472.282192	942.549831	0.24245	0.0001145	0.026203	1.2375E-05	0.26865	0.00012688	472.2821359226737	33.84	0.85381	33.84	33.554	34.408	0					58	21	5	0	0	0	0.027866	1	2511	2511		44.117	3.5442	1	728840			82713	4649	57607	57701	91789	91789					0.0762576030585933
VDLMRTMQTF	10	2 Oxidation (M)	_VDLM(Oxidation (M))RTM(Oxidation (M))QTF_		VDLM(1)RTM(1)QTF		VDLM(52)RTM(52)QTF	0	0	2			REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	425.2019958496094	3	425.202024	1272.58424	0.22096	9.3951E-05	0.14735	6.2655E-05	0.36831	0.00015661	425.2019046530184	34.51	0.86798	34.286	33.997	34.865	-0.22412					51	21	4	0	0	0	0.93809	1	2546	2546		51.528	9.1897	1	1575800	+		82714	37579;20657	57608	57702	91790	91790		631;632			-0.041145276598399505
VDLPLINSL	9	Unmodified	_VDLPLINSL_					0	0	0		SAAL1|p.D354N|1|0.11|ENSG00000166788|chr11:18083714-18083714|C/T|missense_variant	SAAL1|p.D354N|1|0.11|ENSG00000166788|chr11:18083714-18083714|C/T|missense_variant	SAAL1|p.D354N|1|0.11|ENSG00000166788|chr11:18083714-18083714|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.29266357421875	2	492.292225	982.569897	-0.20541	-0.00010112	0.1349	6.6408E-05	-0.070515	-3.4714E-05	492.292149008535	70.601	0.46665	70.613	70.347	70.813	0.012421					23	10	4	0	0	0	0.51687	1	8458	8458		58.23	1.5089	1	804980			82715	37850	57609	57703	91791	91791					0.07791511245807214
VDLQRKNQ	8	Unmodified	_VDLQRKNQ_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1;ENST00000501271.2_1_12:122757424-122758769:-|nuORF	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.306884765625	2	500.780348	999.546142	-0.40859	-0.00020461	-0.51238	-0.00025659	-0.92097	-0.0004612	500.78007486529833	31.72	1.1101	31.72	30.879	31.989	0					32	26	2	0	0	0	0.027866	1	2055	2055		45.952	15.448	1	214640			82716	4458	57610	57704	91792	91792					0.04635090531996866
VDLQYINGD	9	Unmodified	_VDLQYINGD_					0	0	0			REV__ENSG00000175575|ENST00000310571|PAAF1	REV__ENSG00000175575|ENST00000310571|PAAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.769287109375	2	518.750921	1035.48729	-0.39471	-0.00020475	-1.5559	-0.00080713	-1.9506	-0.0010119	518.7501098293382	66.603	0.53432	66.379	65.905	66.439	-0.22374					26	13	2	0	0	0	0.024541	1	7633	7633		17.365	3.5896	1	286650	+		82717	26960	57611	57705	91793	91793					-0.029034305530103666
VDLRFLTM	8	Unmodified	_VDLRFLTM_					0	0	0		nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-4|NRP2	nc|ENSG00000118257|O60462-4|NRP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7770690917969	2	497.773145	993.531738	-0.1595	-7.9396E-05	3.5061	0.0017452	3.3466	0.0016658	497.77493450857236	100.88	0.98188	100.89	100.58	101.56	0.0090332					51	22	4	0	0	0	0.71063	1	12847	12847		66.429	7.6473	1	662100			82718	3674	57612	57706	91794	91794					0.03471302059494974
VDLRFLTM	8	Unmodified	_VDLRFLTM_					0	0	0		nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-4|NRP2	nc|ENSG00000118257|O60462-4|NRP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7745361328125	2	497.773145	993.531738	-0.099282	-4.942E-05	3.6482	0.001816	3.5489	0.0017666	497.7749738154906	100.92	0.87547	100.75	100.46	101.33	-0.17178					51	22	3	0	0	0	0.6536	1	12497	12497		71.296	2.811	1	606910			82719	3674	57612	57706	91795	91795					0.03471302059494974
VDLSKIPLI	9	Unmodified	_VDLSKIPLI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.2873229980469	2	499.318243	996.621933	-0.10326	-5.156E-05	-1.4295	-0.00071378	-1.5328	-0.00076534	499.3179943071793	55.802	0.26059	55.646	55.517	55.778	-0.15601					8	6	2	0	0	0	0.023007	1	6157	6157		87.754	0	1	112700			82720	4623	57613	57707	91796	91796					0.12348674659574499
VDLSRKKV	8	Unmodified	_VDLSRKKV_					0	0	0			REV__ENSG00000158220|ENST00000389567|ESYT3	REV__ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7998962402344	2	472.798009	943.581465	0.60203	0.00028464	3.9515	0.0018682	4.5535	0.0021529	472.7997418850287	77.773	1.5665	77.773	77.469	79.035	0					102	37	4	0	0	0	0.68164	1	9617	9617		68.787	2.9837	1	3021000	+		82721	25181	57614	57708	91797	91797					0.10741753059812709
VDLSRWQP	8	Unmodified	_VDLSRWQP_					0	0	0		ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3130187988281	2	500.764166	999.513779	-0.48414	-0.00024244	-3.6105	-0.001808	-4.0947	-0.0020505	500.7611431085234	76.82	0.37061	76.592	76.36	76.731	-0.22843					9	8	2	0	0	0	0.027866	1	9441	9441		34.173	0	1	37283			82722	3834	57615	57709	91798	91798					0.014003031290030776
VDLTCEIEIK	10	Unmodified	_VDLTCEIEIK_					0	0	0		KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.2664794921875	2	581.804839	1161.59513	-0.29741	-0.00017304	-1.9228	-0.0011187	-2.2202	-0.0012918	581.8034330289498	60.967	1.6782	60.761	60.421	62.099	-0.20599					50	38	3	0	0	0	0.03519	1	6943	6943		36.447	7.2972	1	394680			82723	17800	57616	57710	91799	91799					0.020791979860632637
VDLTCEIEIK	10	Unmodified	_VDLTCEIEIK_					0	0	0		KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	581.804839	1161.59513	-1.6819	-0.00097856	-0.34685	-0.0002018	-2.0288	-0.0011804	582.3057821405741	60.903	0.52548	60.903	60.582	61.108	0	0.04472	0.00086237	NaN	22.58	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114370			82724	17800	57616	57710							0.020791979860632637
VDLTCEIEIK	10	Unmodified	_VDLTCEIEIK_					0	0	0		KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	581.804839	1161.59513	-1.1189	-0.00065096	-0.23802	-0.00013848	-1.3569	-0.00078944	581.8047250000619	61.137	0.5946	60.924	60.643	61.238	-0.21339	0.065835	0.00098902	NaN	22.58	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131110			82725	17800	57616	57710							0.020791979860632637
VDLTCEIEIK	10	Unmodified	_VDLTCEIEIK_					0	0	0		KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	581.804839	1161.59513	-0.60537	-0.00035221	-1.5353	-0.00089323	-2.1406	-0.0012454	582.3051864312466	60.877	0.56326	60.948	60.639	61.203	0.071125	0.090198	-0.00052048	NaN	22.58	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136790			82726	17800	57616	57710							0.020791979860632637
VDLTCEIEIK	10	Unmodified	_VDLTCEIEIK_					0	0	0		KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	581.804839	1161.59513	-1.6661	-0.00096934	-0.28363	-0.00016502	-1.9497	-0.0011344	581.8045693027226	60.929	1.0559	60.753	60.521	61.577	-0.1761	-0.10493	0.00093593	NaN	22.58	38	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448960			82727	17800	57616	57710							0.020791979860632637
VDLTCEIEIK	10	Unmodified	_VDLTCEIEIK_					0	0	0		KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	KIF21B|p.A637V|1|0.45|ENSG00000116852|chr1:200998551-200998551|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	581.804839	1161.59513	-1.2833	-0.00074661	-0.81316	-0.0004731	-2.0964	-0.0012197	581.8042228517306	61.112	0.59504	60.859	60.584	61.179	-0.25373	0.00073344	0.00031977	NaN	22.58	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415650			82728	17800	57616	57710							0.020791979860632637
VDLTRLPE	8	Unmodified	_VDLTRLPE_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;RAPGEF6|p.V482Kfs*5|1|0.12|ENSG00000158987|chr5:131495636-131495637|-/ACTCCTT|frameshift_variant;ENST00000514179.5_1_5:130834202-130867847:-|nuORF	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2497253417969	2	471.766374	941.518196	-0.7908	-0.00037307	-1.1666	-0.00055035	-1.9574	-0.00092342	471.76583478648286	20.712	0.8418	20.489	20.266	21.108	-0.22344					26	16	3	0	0	0	0.027866	1	593	593		12.207	0	1	130440			82729	6713	57617	57711	91800	91800					0.045097675518945834
VDLVVIRVT	9	Unmodified	_VDLVVIRVT_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3310546875	2	507.321317	1012.62808	-0.6479	-0.00032869	0.76537	0.00038829	0.11746	5.9592E-05	507.32157172709447	73.319	0.62286	73.319	72.994	73.617	0					46	16	4	0	0	0	0.024466	1	8979	8979		39.253	10.103	1	2768100	+		82730	22525	57618	57712	91801	91801					0.12227192891100458
VDLYGFPSDL	10	Unmodified	_VDLYGFPSDL_					0	0	0			REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	REV__CFTR|p.L1143Yfs*22|1|0.07|ENSG00000001626|chr7:117614672-117614673|-/ATCACATTAAATTTACATTTCAATTTTA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.27685546875	2	563.276772	1124.53899	0.20952	0.00011802	-0.76473	-0.00043075	-0.5552	-0.00031273	563.2764196630745	81.846	2.6296	81.653	81.05	83.679	-0.19334					207	61	5	0	0	0	0.42446	1	9837	9837		96.19	0	1	5941100	+		82731	19302	57619	57713	91802	91802					-0.01829686859082358
VDMATVTKRK	10	Unmodified	_VDMATVTKRK_					0	0	0			REV__ENSG00000278705|ENST00000377745|H4C2	REV__ENSG00000278705|ENST00000377745|H4C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	574.8372192382812	2	574.82644	1147.63833	-1.4538	-0.00083567	-2.2082	-0.0012693	-3.662	-0.002105	574.8251890295079	51.695	0.46404	51.782	51.61	52.074	0.087009					28	12	3	0	0	0	0.03519	1	5418	5418		36.447	9.7538	1	766490	+		82732	25191	57620	57714	91803	91803					0.07041432554001403
VDMICEESFM	10	Unmodified	_VDMICEESFM_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-2|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.8877868652344	3	401.829199	1202.46577	0.88979	0.00035755	0.12189	4.8979E-05	1.0117	0.00040652	401.8291332328485	21.634	2.0466	21.444	20.686	22.732	-0.19072					82	42	3	0	0	0	0.03519	1	847	847		21.686	9.4791	1	71072	+		82733	21151	57621	57715	91804	91804					-0.12736642959885103
VDMIKPNL	8	Unmodified	_VDMIKPNL_					0	0	0			REV__nc|ENSG00000136205|Q68CZ2-2|TNS3	REV__nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2784729003906	2	465.259871	928.505189	-0.10289	-4.787E-05	-1.5786	-0.00073446	-1.6815	-0.00078233	465.2593011465829	50.946	0.49796	50.797	50.657	51.155	-0.14916					19	13	2	0	0	0	0.027866	1	5398	5398		12.207	0	1	187280	+		82734	23637	57622	57716	91805	91805					0.03807613168157786
VDMPLGHLL	9	Unmodified	_VDMPLGHLL_					0	0	0			REV__ENST00000296490.7_1_3:52291178-52291430:-|nuORF	REV__ENST00000296490.7_1_3:52291178-52291430:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7753601074219	2	497.773145	993.531738	0.38265	0.00019047	2.7993	0.0013934	3.1819	0.0015839	497.77461153467283	100.88	0.9181	100.87	100.62	101.53	-0.0054474					46	21	4	0	0	0	0.60698	1	12818	12818		52.299	3.0884	1	953960	+		82735	29995	57623	57717	91806	91806					0.03471302059483605
VDMQKLLGGQ	10	Unmodified	_VDMQKLLGGQ_					0	0	0		ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.8295288085938	2	544.792066	1087.56958	0.023946	1.3046E-05	-2.0235	-0.0011024	-1.9995	-0.0010893	545.2923972172615	54.319	0.23072	54.417	54.294	54.525	0.098011					9	6	2	0	0	0	0.03519	1	5870	5870		33.922	1.9668	1	349220			82736	8930	57624	57718	91807	91807					0.029297682543301562
VDMQKLLGGQ	10	Unmodified	_VDMQKLLGGQ_					0	0	0		ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.792066	1087.56958	-0.74827	-0.00040765	-3.0784	-0.0016771	-3.8267	-0.0020847	545.2914954017092	54.437	0.71286	54.3	54.021	54.734	-0.13617	-0.035476	0.00041799	NaN	49.536	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454580			82737	8930	57624	57718							0.029297682543301562
VDMQKLLGGQ	10	Unmodified	_VDMQKLLGGQ_					0	0	0		ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.792066	1087.56958	-0.19811	-0.00010793	-4.754	-0.00259	-4.9521	-0.0026979	545.2908049158947	54.536	0.37624	54.291	54.103	54.479	-0.2453	-0.045228	-0.0014078	NaN	49.536	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491090			82738	8930	57624	57718							0.029297682543301562
VDMSPEAEPDL	11	Unmodified	_VDMSPEAEPDL_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.8877868652344	3	401.513033	1201.51727	0.60935	0.00024466	4.1855	0.0016805	4.7948	0.0019252	401.51456528908807	22.898	0.32332	22.713	22.554	22.877	-0.18539					10	6	2	0	0	0	0.024727	1	847	847		21.78	12.569	1	45078	+		82739	24139	57625	57719	91808	91808					-0.07542859669979407
VDNFTLDIN	9	Unmodified	_VDNFTLDIN_					0	0	0		IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7946166992188	2	525.758746	1049.50294	-1.4749	-0.00077546	3.5016	0.001841	2.0267	0.0010655	525.7605176495331	36.43	0.4158	36.43	36.162	36.578	0					17	11	2	0	0	0	0.024457	1	2865	2865		37.159	0	1	166530			82740	4589	57626	57720	91809	91809					-0.01983144035943951
VDNFTLDIN	9	Unmodified	_VDNFTLDIN_					0	0	0		IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7953491210938	2	525.758746	1049.50294	-1.1683	-0.00061423	3.3092	0.0017398	2.1409	0.0011256	525.7603616774034	36.217	0.35096	36.175	36.032	36.383	-0.042454					16	9	2	0	0	0	0.024427	1	2818	2818		42.396	16.822	1	109530			82741	4589	57626	57720	91810	91810					-0.01983144035943951
VDNFTLDIN	9	Unmodified	_VDNFTLDIN_					0	0	0		IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.758746	1049.50294	0.089571	4.7093E-05	3.5858	0.0018853	3.6754	0.0019324	526.2612269788426	36.254	0.52921	36.037	35.879	36.408	-0.21661	-0.14909	0.0002691	NaN	42.396	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109390			82742	4589	57626	57720							-0.01983144035943951
VDNFTLDIN	9	Unmodified	_VDNFTLDIN_					0	0	0		IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	IMMT|p.S584Ifs*11|1|0.54|ENSG00000132305|chr2:86144795-86144796|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.758746	1049.50294	1.0363	0.00054485	2.8529	0.0014999	3.8892	0.0020448	526.2608464787804	36.153	0.59132	35.955	35.742	36.334	-0.19829	-0.23179	-0.00050162	NaN	42.396	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218510			82743	4589	57626	57720							-0.01983144035943951
VDNINKLLL	9	Unmodified	_VDNINKLLL_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;PLXNA3|p.Y104Mfs*78|1|0.56|ENSG00000130827|chrX:154460492-154460492|C/-|frameshift_variant	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MSMS	OPSCC_39_ClassI_Rep-2	2	521.3184814453125	2	521.318774	1040.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.166	1	64.904	64.404	65.404	-0.2626								0	0	0	0.1457	1	7668	7668		82.305	0	1				82744	4467	57627	57721	91811	91811					0.10430889028475576
VDNKMLDDLY	10	Unmodified	_VDNKMLDDLY_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	613.2904052734375	2	613.292096	1224.56964	-1.3678	-0.00083883	-1.8261	-0.0011199	-3.1938	-0.0019588	613.2910663344024	60.993	2.0779	60.787	60.213	62.291	-0.20599					148	51	4	0	0	0	0.45367	5	6857	6809;6833;6845;6857;6871		93.195	16.179	1	52007000			82745	4666	57628	57722	91812;91813;91814;91815;91816	91815					-0.03366276536348778
VDNKMLDDLY	10	Unmodified	_VDNKMLDDLY_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.2907104492188	2	613.292096	1224.56964	-1.2832	-0.00078698	-2.041	-0.0012517	-3.3242	-0.0020387	613.2908696486643	60.831	2.3089	60.654	60.076	62.385	-0.1761					192	57	5	0	0	0	0.45367	4	6832	6808;6820;6832;6845		93.195	10.955	1	55768000			82746	4666	57628	57722	91817;91818;91819;91820	91819					-0.03366276536348778
VDNKMLDDLY	10	Unmodified	_VDNKMLDDLY_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;XPO4|p.E724*|1|0.03|ENSG00000132953|chr13:20799317-20799318|-/A|frameshift_variant	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	613.2907104492188	2	613.292096	1224.56964	-1.0024	-0.00061478	-2.4462	-0.0015002	-3.4486	-0.002115	613.2906327929812	61.043	2.0404	60.789	60.253	62.293	-0.25373					176	50	5	0	0	0	0.40067	5	6839	6791;6827;6839;6852;6864		98.629	10.456	1	55372000			82747	4666	57628	57722	91821;91822;91823;91824;91825	91823					-0.03366276536348778
VDNKRCYL	8	Unmodified	_VDNKRCYL_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	505.7575378417969	2	505.758027	1009.5015	0.29515	0.00014928	-1.7096	-0.00086464	-1.4144	-0.00071536	505.75699380975925	100.85	2.1791	100.84	100.65	102.83	-0.0054474					63	50	2	0	0	0	0.91956	1	12842	12842		49.442	5.3247	1	335470			82748	1046	57629	57723	91826	91826					-0.0028705660571404223
VDNVATDCY	9	Unmodified	_VDNVATDCY_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.2083435058594	2	500.208032	998.401511	-0.44125	-0.00022072	-0.1117	-5.5871E-05	-0.55294	-0.00027659	500.2079617673512	41.963	1.0523	41.732	41.354	42.406	-0.2303					95	28	4	0	0	0	0.31037	1	3757	3757		74.255	0	1	21828000	+		82749	25854	57630	57724	91827	91827					-0.09775338730173644
VDPEGKVRTKD	11	Unmodified	_VDPEGKVRTKD_					0	0	0		nc|ENSG00000185634|Q6S5L8-2|SHC4;ENSG00000185634|ENST00000332408|SHC4	nc|ENSG00000185634|Q6S5L8-2|SHC4	nc|ENSG00000185634|Q6S5L8-2|SHC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3367919921875	2	622.335684	1242.65681	0.2866	0.00017836	1.052	0.0006547	1.3386	0.00083306	622.3362135426892	110.15	0.73624	110.02	109.81	110.54	-0.12525					84	27	4	0	0	0	1.0947	1	13565	13565		12.812	0.60486	1	1619900			82750	9460	57631	57725	91828	91828					0.04519265729572908
VDPFTDHDL	9	Unmodified	_VDPFTDHDL_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.3419189453125	2	529.743096	1057.47164	-0.63645	-0.00033715	4.3426	0.0023005	3.7062	0.0019633	529.7454912534209	84.128	0.34713	84.155	83.945	84.292	0.026558					13	7	2	0	0	0	0.024405	1	10430	10430		53.351	15.54	1	56186			82751	10117	57632	57726	91829	91829					-0.05479717070033985
VDPFTDHDL	9	Unmodified	_VDPFTDHDL_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	529.743096	1057.47164	0.3336	0.00017672	1.0527	0.00055764	1.3863	0.00073437	529.7437444064625	84.483	0.42346	84.324	84.149	84.573	-0.15869	0.12181	-0.0021775	NaN	60.972	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40026			82752	10117	57632	57726							-0.05479717070033985
VDPITVPEM	9	Unmodified	_VDPITVPEM_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3070373535156	2	500.754618	999.494683	-0.59452	-0.00029771	-1.5847	-0.00079353	-2.1792	-0.0010912	501.25428292221676	31.351	0.25343	31.351	31.216	31.469	0					8	5	2	0	0	0	0.024457	1	2079	2079		45.952	0	1	77703	+		82753	24139	57633	57727	91830	91830					-0.0050841427693057994
VDPLDPCKTY	10	Carbamidomethyl (C)	_VDPLDPC(Carbamidomethyl (C))KTY_	VDPLDPC(1)KTY		VDPLDPC(85)KTY		0	1	0			REV__ENSG00000100253|ENST00000216075|MIOX	REV__ENSG00000100253|ENST00000216075|MIOX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.2847290039062	2	604.286814	1206.55907	-0.42352	-0.00025593	-2.4705	-0.0014929	-2.894	-0.0017488	604.285200230153	62.233	0.6226	61.975	61.667	62.289	-0.25771					52	15	4	0	0	0	0.52982	1	6983	6983		84.916	10.66	1	3319300	+		82754	21074	57634	57728	91831	91831	268				-0.03594259190799676
VDPSHNWTL	9	Unmodified	_VDPSHNWTL_					0	0	0			REV__ENSG00000179057|ENST00000513874|IGSF22	REV__ENSG00000179057|ENST00000513874|IGSF22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.7593383789062	2	534.759081	1067.50361	-0.46196	-0.00024704	-1.0074	-0.00053869	-1.4693	-0.00078573	534.7592841268855	73.079	0.6386	72.802	72.454	73.092	-0.2769					30	14	3	0	0	0	0.48817	1	8573	8573		60.118	8.5905	1	1123400	+		82755	27232	57635	57729	91832	91832					-0.027443045962399992
VDPSSNLYY	9	Unmodified	_VDPSSNLYY_					0	0	0		nc|ENSG00000144191|Q16281-3|CNGA3;nc|ENSG00000144191|Q16281-2|CNGA3;ENSG00000144191|ENST00000272602|CNGA3	nc|ENSG00000144191|Q16281-3|CNGA3	nc|ENSG00000144191|Q16281-3|CNGA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.2482299804688	2	529.245472	1056.47639	-0.036451	-1.9292E-05	2.6238	0.0013886	2.5873	0.0013693	529.2465583974295	58.882	1.313	58.701	58.386	59.699	-0.18133					84	32	4	0	0	0	0.29158	1	6542	6542		76.774	5.4784	1	2469000			82756	18353	57636	57730	91833	91833					-0.04958832927286494
VDPSTLYSI	9	Unmodified	_VDPSTLYSI_					0	0	0			REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1	REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2718811035156	2	497.758215	993.501877	0.16985	8.4542E-05	0.97071	0.00048318	1.1406	0.00056772	497.7590063555252	52.768	0.43125	52.621	52.366	52.797	-0.14723					17	10	2	0	0	0	0.024205	1	5623	5623		27.882	0	1	132740	+		82757	20318	57637	57731	91834	91834					0.004866415951369163
VDQATLVTL	9	Unmodified	_VDQATLVTL_					0	0	0			REV__nc|ENSG00000163026|Q9H6R7-2|WDCP	REV__nc|ENSG00000163026|Q9H6R7-2|WDCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.2740173339844	2	480.274032	958.533512	0.32668	0.00015689	-0.44039	-0.00021151	-0.11371	-5.4614E-05	480.2738193953115	75.842	1.4626	75.667	75.389	76.852	-0.17548					97	35	4	0	0	0	0.2101	1	8994	8994		87.696	10.922	1	3823800	+		82758	25523	57638	57732	91835	91835					0.052586343491157095
VDQATLVTLI	10	Unmodified	_VDQATLVTLI_					0	0	0			REV__nc|ENSG00000163026|Q9H6R7-2|WDCP	REV__nc|ENSG00000163026|Q9H6R7-2|WDCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.29541015625	2	536.816064	1071.61758	-0.39348	-0.00021123	0.20001	0.00010737	-0.19347	-0.00010386	536.8160618832914	63.679	0.39748	63.428	63.156	63.553	-0.25141					25	10	3	0	0	0	0.03519	1	7381	7381		22.58	0.61977	1	1752600	+		82759	25523	57639	57733	91836	91836					0.08463165446028142
VDQERTRF	8	Unmodified	_VDQERTRF_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7689208984375	2	525.76998	1049.52541	-0.33165	-0.00017437	0.32209	0.00016934	-0.0095677	-5.0304E-06	525.7695742420977	34.074	1.1849	33.867	33.627	34.812	-0.20696					73	29	4	0	0	0	0.80469	1	2460	2460		58.782	4.0596	1	9132600	+		82760	26587	57640	57734	91837	91837					0.0026250015232562873
VDQETFDLI	9	Unmodified	_VDQETFDLI_					0	0	0			REV__ENSG00000174059|ENST00000310833|CD34	REV__ENSG00000174059|ENST00000310833|CD34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.800048828125	2	540.266404	1078.51826	-0.62312	-0.00033665	-0.15577	-8.4159E-05	-0.77889	-0.00042081	540.2658882365132	68.528	0.89303	68.267	67.654	68.547	-0.26166					28	21	2	0	0	0	0.024374	1	7888	7888		49.442	0	1	343700	+		82761	26831	57641	57735	91838	91838					-0.017862772387616133
VDQGMRLVE	9	Unmodified	_VDQGMRLVE_					0	0	0			REV__ENST00000488136.5_1_9:79034776-79115945:+|nuORF	REV__ENST00000488136.5_1_9:79034776-79115945:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7617797851562	2	523.768591	1045.52263	0.354	0.00018541	-0.6396	-0.000335	-0.2856	-0.00014959	523.7674926236298	59.553	0.32668	59.305	59.13	59.457	-0.24842					14	7	4	0	0	0	0.024381	1	6595	6595		45.952	0	1	132490	+		82762	33632	57642	57736	91839	91839					0.0016890870317638473
VDQKNALV	8	Unmodified	_VDQKNALV_					0	0	0			REV__ENST00000609537.5_1_20:62333085-62338084:-|nuORF	REV__ENST00000609537.5_1_20:62333085-62338084:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.27960205078125	2	443.753267	885.491981	-0.19451	-8.6314E-05	-1.4839	-0.00065847	-1.6784	-0.00074478	443.75343332744234	54.826	0.17963	54.826	54.689	54.869	0					6	4	2	0	0	0	0.027866	1	6025	6025		24.203	0	1	54136	+		82763	21207	57643	57737	91840	91840					0.044654983804207404
VDQLVEDDL	9	Unmodified	_VDQLVEDDL_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.2898559570312	2	523.256037	1044.49752	0.22429	0.00011736	4.0508	0.0021196	4.275	0.0022369	523.2597277855098	57.428	0.59913	57.253	56.898	57.497	-0.1749					44	15	5	0	0	0	0.024288	1	6386	6386		44.377	17.684	1	428270	+		82764	32494	57644	57738	91841	91841					-0.02294867618434182
VDQNTAIV	8	Unmodified	_VDQNTAIV_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	430.2298889160156	2	430.229625	858.444697	-0.52877	-0.00022749	0.74555	0.00032076	0.21679	9.3269E-05	430.2298226062416	27.761	1.3254	27.593	27.317	28.642	-0.16816					66	31	5	0	0	0	0.53523	1	1549	1549		82.305	16.502	1	1874800			82765	912	57645	57739	91842	91842					0.009812191094283662
VDQNTAIV	8	Unmodified	_VDQNTAIV_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.22967529296875	2	430.229625	858.444697	0.1038	4.4659E-05	0.16825	7.2388E-05	0.27206	0.00011705	430.22956854895466	27.815	1.2165	27.662	27.352	28.569	-0.15279					54	29	4	0	0	0	0.6536	1	1542	1542		71.296	13.484	1	1955600			82766	912	57645	57739	91843	91843					0.009812191094283662
VDQNTAIV	8	Unmodified	_VDQNTAIV_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	430.229625	858.444697	0.001048	4.5087E-07	0.30771	0.00013238	0.30875	0.00013283	430.22963372454177	27.944	0.90549	27.699	27.376	28.281	-0.24524	0.04762	-6.9195E-05	NaN	82.305	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247700			82767	912	57645	57739							0.009812191094283662
VDQSSTLGLLI	11	Unmodified	_VDQSSTLGLLI_					0	0	0			REV__OR4K17|p.C210Vfs*12|1|0.1|ENSG00000176230|chr14:20118029-20118029|T/-|frameshift_variant	REV__OR4K17|p.C210Vfs*12|1|0.1|ENSG00000176230|chr14:20118029-20118029|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.3265991210938	2	573.324254	1144.63395	-0.5235	-0.00030014	2.8128	0.0016127	2.2893	0.0013125	573.3256531057511	72.733	1.347	72.535	72.248	73.595	-0.19811					59	32	4	0	0	0	0.93459	1	8532	8532		49.536	5.1589	1	1057800	+		82768	27007	57646	57740	91844	91844					0.06742246612111558
VDQVFFIFL	9	Unmodified	_VDQVFFIFL_					0	0	0			REV__SCAMP3|p.F237L|1|0.21|ENSG00000116521|chr1:155257353-155257353|G/C|missense_variant	REV__SCAMP3|p.F237L|1|0.21|ENSG00000116521|chr1:155257353-155257353|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	564.31298828125	2	564.310418	1126.60628	-0.84121	-0.0004747	-2.5054	-0.0014138	-3.3466	-0.0018885	564.3087935774306	66.714	0.46941	66.744	66.565	67.034	0.030098					19	10	3	0	0	0	0.024381	1	7898	7898		37.159	0	1	427500	+		82769	37461	57647	57741	91845	91845					0.04804388142520111
VDRAERFYGK	10	Unmodified	_VDRAERFYGK_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	413.26904296875	3	414.219283	1239.63602	-0.77908	-0.00032271	-1.885	-0.00078081	-2.6641	-0.0011035	414.2183110264589	28.204	0.40821	28.035	27.886	28.294	-0.16897					13	9	2	0	0	0	0.03519	1	1642	1642		28.577	0	1	54912	+		82770	28458	57648	57742	91846	91846					0.025787201405364613
VDREGGLNTV	10	Unmodified	_VDREGGLNTV_					0	0	0		ENST00000505145.1_1_5:177034264-177036693:+|nuORF;ENSG00000027847|ENST00000029410|B4GALT7	ENST00000505145.1_1_5:177034264-177036693:+|nuORF	ENST00000505145.1_1_5:177034264-177036693:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.311279296875	2	530.275095	1058.53564	-0.44072	-0.0002337	4.3398	0.0023013	3.8991	0.0020676	530.277005132011	57.058	0.70703	56.894	56.571	57.278	-0.16432					60	18	5	0	0	0	0.03519	1	6417	6417		27.047	0	1	1385300			82771	1000	57649	57743	91847	91847					0.008710630869245506
VDRETKLAN	9	Unmodified	_VDRETKLAN_					0	0	0			REV__nc|ENSG00000183020|O94973-3|AP2A2;REV__nc|ENSG00000196961|O95782|AP2A1	REV__nc|ENSG00000196961|O95782|AP2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7661743164062	2	523.285463	1044.55637	-0.028646	-1.499E-05	2.357	0.0012334	2.3284	0.0012184	523.7880203777952	78.882	0.76907	78.627	78.17	78.939	-0.25471					26	17	2	0	0	0	0.024397	1	9415	9415		47.657	22.083	1	306490	+		82772	28246;27526	57650	57744	91848	91848					0.035876534665476356
VDRFMPRT	8	Unmodified	_VDRFMPRT_					0	0	0		ENSG00000127993|ENST00000265732|RBM48;nc|ENSG00000127993|Q5RL73-2|RBM48	ENSG00000127993|ENST00000265732|RBM48	ENSG00000127993|ENST00000265732|RBM48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.80322265625	2	511.266019	1020.51748	0.37078	0.00018957	0.57506	0.00029401	0.94584	0.00048358	511.76869443529057	19.017	0.24612	18.813	18.658	18.904	-0.20371					6	4	2	0	0	0	0.027866	1	353	353		34.173	7.3764	1	20978			82773	4273	57651	57745	91849	91849					0.008046496311976625
VDRIDETQD	9	Unmodified	_VDRIDETQD_					0	0	0			REV__ENSG00000100290|ENST00000216115|BIK	REV__ENSG00000100290|ENST00000216115|BIK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.30078125	2	545.754192	1089.49383	-0.67067	-0.00036602	4.3691	0.0023845	3.6984	0.0020184	545.7564933086678	50.522	0.52514	50.373	50.132	50.657	-0.14916					49	15	4	0	0	0	0.024344	1	5265	5265		37.812	4.9991	1	1364600	+		82774	21081	57652	57746	91850	91850					-0.04733537392280596
VDRIKRRLELQ	11	Unmodified	_VDRIKRRLELQ_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.96148681640625	3	475.959803	1424.85758	0.51954	0.00024728	2.1965	0.0010454	2.716	0.0012927	475.9607391172343	63.756	1.3488	63.504	63.156	64.505	-0.25141					111	36	5	0	0	0	1.0501	1	7435	7435		25.068	6.1015	1	6049200	+		82775	24099	57653	57747	91851	91851					0.16214579836901066
VDRLSAAADL	10	Unmodified	_VDRLSAAADL_					0	0	0		nc|ENSG00000144619|Q8IWV2-3|CNTN4;nc|ENSG00000144619|Q8IWV2-4|CNTN4;ENST00000430505.6_1_3:2613181-3079017:+|nuORF;ENSG00000144619|ENST00000418658|CNTN4	nc|ENSG00000144619|Q8IWV2-3|CNTN4	nc|ENSG00000144619|Q8IWV2-3|CNTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3087158203125	2	515.780013	1029.54547	0.45284	0.00023357	-2.3084	-0.0011906	-1.8556	-0.00095708	516.2793158795365	87.403	0.16885	87.424	87.349	87.518	0.021255					5	3	2	0	0	0	0.03519	1	10921	10921		52.937	3.4952	1	25480			82776	5753	57654	57748	91852	91852					0.031882510922514484
VDRPLRSA	8	Unmodified	_VDRPLRSA_					0	0	0			REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.26422119140625	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0365	1	10276	10276		31.53	4.8369	1	3048400	+		82777	30944	57655	57749	91853	91853					0.054357228488470355
VDRPLRSA	8	Unmodified	_VDRPLRSA_					0	0	0			REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	REV__ENST00000361545.9_1_7:73703847-73704045:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2641296386719	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.93437	1	10259	10259		47.657	1.7054	1	2903100	+		82778	30944	57655	57749	91854	91854					0.054357228488470355
VDRPQRFETA	10	Unmodified	_VDRPQRFETA_					0	0	0		ENST00000584265.1_1_17:60749371-60749413:+|nuORF	ENST00000584265.1_1_17:60749371-60749413:+|nuORF	ENST00000584265.1_1_17:60749371-60749413:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	406.87908935546875	3	406.879038	1217.61528	0.25194	0.00010251	0.13398	5.4512E-05	0.38592	0.00015702	406.8790741365247	19.918	1.2902	19.813	19.509	20.799	-0.10477					72	26	4	0	0	0	1.0814	1	477	477		35.178	1.0917	1	1107600			82779	17203	57656	57750	91855	91855					0.015181297608933164
VDRRCHGL	8	Unmodified	_VDRRCHGL_					0	0	0			REV__TSNARE1|p.Y176H|1|0.1|ENSG00000171045|chr8:142344185-142344185|A/G|missense_variant	REV__TSNARE1|p.Y176H|1|0.1|ENSG00000171045|chr8:142344185-142344185|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2773132324219	2	478.24816	954.481768	0.39441	0.00018863	-1.9515	-0.00093328	-1.557	-0.00074465	478.2468558245708	75.473	0.46912	75.484	75.211	75.68	0.010376					20	12	2	0	0	0	0.027866	1	9146	9146		30.504	19.638	1	296050	+		82780	37737	57657	57751	91856	91856					0.0027061217421078254
VDRRKREP	8	Unmodified	_VDRRKREP_					0	0	0			REV__ENSG00000140443|ENST00000650285|IGF1R	REV__ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8185424804688	2	528.307064	1054.59957	0.41402	0.00021873	-3.8466	-0.0020322	-3.4325	-0.0018134	528.8052898013694	70.162	0.24667	69.869	69.673	69.92	-0.29291					7	5	2	0	0	0	0.027866	1	8437	8437		15.642	0	1	91269	+		82781	24015	57658	57752	91857	91857					0.07445888034521886
VDRRPAVL	8	Unmodified	_VDRRPAVL_					0	0	0		ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.313232421875	2	463.282526	924.550499	1.7057	0.00079023	-1.6582	-0.00076824	0.047477	2.1995E-05	463.2815697629844	19.236	0.59467	19.002	18.829	19.424	-0.23345					19	11	2	0	0	0	0.027866	1	376	376		37.159	0	1	47141			82782	3661	57659	57753	91858	91858					0.0852059974556596
VDRYIWSWTKN	11	Unmodified	_VDRYIWSWTKN_					0	0	0		CPA3|p.G222R|1|0.23|ENSG00000163751|chr3:148881609-148881609|G/A|missense_variant	CPA3|p.G222R|1|0.23|ENSG00000163751|chr3:148881609-148881609|G/A|missense_variant	CPA3|p.G222R|1|0.23|ENSG00000163751|chr3:148881609-148881609|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.7738952636719	3	489.917493	1466.73065	-1.019	-0.00049925	-1.4227	-0.00069699	-2.4417	-0.0011962	489.91666637771726	65.649	0.20911	65.435	65.338	65.547	-0.21328					6	4	2	0	0	0	0.024834	1	7524	7524		8.7993	0	1	118550			82783	580	57660	57754	91859	91859					0.015952338918850728
VDRYNIYKKYW	11	Unmodified	_VDRYNIYKKYW_					0	0	0		ENST00000347053.7_1_7:107002482-107002769:-|nuORF	ENST00000347053.7_1_7:107002482-107002769:-|nuORF	ENST00000347053.7_1_7:107002482-107002769:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7892456054688	3	516.605026	1546.79325	-1.1296	-0.00058357	2.106	0.001088	0.9764	0.00050441	516.6060170184207	52.069	0.43209	52.161	51.93	52.363	0.091938					20	10	2	0	0	0	0.024876	1	5509	5509		9.2118	0	1	345340			82784	12568	57661	57755	91860	91860					0.04172379960073158
VDSAGPSLGLD	11	Unmodified	_VDSAGPSLGLD_					0	0	0			REV__ENSG00000160883|ENST00000292432|HK3	REV__ENSG00000160883|ENST00000292432|HK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.8021240234375	2	515.756204	1029.49785	0.51604	0.00026615	-0.3754	-0.00019362	0.14064	7.2535E-05	515.7559979198373	58.906	1.6084	58.906	58.38	59.988	0					60	43	3	0	0	0	0.024785	1	6801	6801		45.972	0.020292	1	452880	+		82785	25357	57662	57756	91861	91861					-0.01571447898572842
VDSCSQLY	8	Carbamidomethyl (C)	_VDSC(Carbamidomethyl (C))SQLY_	VDSC(1)SQLY		VDSC(68)SQLY		0	1	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	486.210575	970.406597	1.1593	0.00056365	1.4612	0.00071047	2.6205	0.0012741	486.2094417323482	54.669	0.21607	54.462	54.395	54.611	-0.20613					7	5	2	0	0	0	0.027866	1	5825	5825		68.485	11.764	1	61093	+		82786	20429	57663	57757	91862	91862	262				-0.07979034867548762
VDSEHGERL	9	Unmodified	_VDSEHGERL_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7691040039062	2	521.25162	1040.48869	-1.1953	-0.00062304	-4.4198	-0.0023038	-5.615	-0.0029268	521.2505131716666	55.291	0.15188	55.389	55.332	55.484	0.098015					5	3	2	0	0	0	0.024374	1	6040	6040		25.574	0	1	53335	+		82787	27626	57664	57758	91863	91863					-0.029937964642158477
VDSKEAQLI	9	Unmodified	_VDSKEAQLI_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2948913574219	2	501.776939	1001.53933	-0.22793	-0.00011437	0.34312	0.00017217	0.11518	5.7796E-05	501.7768447501494	54.171	0.69359	54.171	53.799	54.492	0					32	19	2	0	0	0	0.024263	1	5878	5878		60.972	8.6728	1	705240			82788	8735	57665	57759	91864	91864					0.038617328607642776
VDSKEAQLI	9	Unmodified	_VDSKEAQLI_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.776939	1001.53933	-0.02475	-1.2419E-05	0.29461	0.00014783	0.26985	0.00013541	501.7769001044255	54.319	0.55572	54.172	53.921	54.477	-0.14723	0.030546	6.5146E-05	NaN	60.972	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688890			82789	8735	57665	57759							0.038617328607642776
VDSKGLIVK	9	Unmodified	_VDSKGLIVK_					0	0	0		nc|ENSG00000065833|P48163-2|ME1;ENSG00000065833|ENST00000369705|ME1;ME3|p.F587Hfs*12|1|0.26|ENSG00000151376|chr11:86441333-86441336|AAAG/-|frameshift_variant;ENSG00000151376|ENST00000524826|ME3	nc|ENSG00000065833|P48163-2|ME1	nc|ENSG00000065833|P48163-2|ME1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7693786621094	2	479.800217	957.585882	-0.96117	-0.00046117	0.88636	0.00042528	-0.074812	-3.5895E-05	479.8004667227563	51.767	1.2567	51.854	51.264	52.521	0.087006					62	33	4	0	0	0	0.023635	1	5420	5420		76.774	29.117	1	1285400			82790	1320	57666	57760	91865	91865					0.1053921748269886
VDSLEAFSH	9	Unmodified	_VDSLEAFSH_					0	0	0			REV__ENST00000543687.1_1_12:124241315-124242576:+|nuORF	REV__ENST00000543687.1_1_12:124241315-124242576:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.2841796875	2	502.737814	1003.46108	0.71045	0.00035717	3.4005	0.0017096	4.1109	0.0020667	502.73923641446873	84.923	1.2026	84.764	84.364	85.566	-0.15869					80	28	4	0	0	0	0.024405	1	10339	10339		20.947	0	1	958880	+		82791	34805	57667	57761	91866	91866					-0.04051699724482205
VDSLKPIEL	9	Unmodified	_VDSLKPIEL_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.29718017578125	2	507.297507	1012.58046	0.066731	3.3852E-05	-0.25534	-0.00012954	-0.18861	-9.5683E-05	507.2973380610919	86.256	0.74238	86.119	85.832	86.574	-0.13734					40	16	4	0	0	0	0.56934	1	10462	10462		54.776	13.998	1	405760			82792	3685	57668	57762	91867	91867					0.07467493900230693
VDSLKPIEL	9	Unmodified	_VDSLKPIEL_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.297507	1012.58046	0.32156	0.00016312	0.67126	0.00034053	0.99281	0.00050365	507.29780351961335	86.405	0.605	86.405	86.128	86.733	0	0.20487	0.0010087	NaN	54.776	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78172			82793	3685	57668	57762							0.07467493900230693
VDSLKPIEL	9	Unmodified	_VDSLKPIEL_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.297507	1012.58046	0.16315	8.2765E-05	-0.15031	-7.6254E-05	0.012834	6.5108E-06	507.29742299032864	86.332	0.78768	86.145	85.859	86.647	-0.18696	-0.055953	0.00017515	NaN	54.776	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392020			82794	3685	57668	57762							0.07467493900230693
VDSLKPIEL	9	Unmodified	_VDSLKPIEL_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.297507	1012.58046	0.51907	0.00026332	-0.56703	-0.00028765	-0.047962	-2.4331E-05	507.297178501142	86.275	0.82812	86.133	85.798	86.626	-0.14217	-0.06744	-0.00024765	NaN	54.776	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322480			82795	3685	57668	57762							0.07467493900230693
VDSLLARSI	9	Unmodified	_VDSLLARSI_					0	0	0			REV__MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant	REV__MFSD9|p.S283Ffs*23|1|0.21|ENSG00000135953|chr2:102718997-102718998|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.2690734863281	2	487.287474	972.560395	-0.71347	-0.00034766	0.49474	0.00024108	-0.21873	-0.00010658	487.28757284987023	53.092	0.68677	53.188	52.906	53.592	0.095669					44	18	3	0	0	0	0.02435	1	5711	5711		42.396	0	1	1562500	+		82796	23603	57669	57763	91868	91868					0.0730174296027144
VDSNLPLTI	9	Unmodified	_VDSNLPLTI_					0	0	0			REV__nc|ENSG00000130939|O95155-3|UBE4B	REV__nc|ENSG00000130939|O95155-3|UBE4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2921447753906	2	486.274032	970.533512	0.28108	0.00013668	-0.2215	-0.00010771	0.059579	2.8972E-05	486.27390015362886	59.764	0.84706	59.515	59.211	60.058	-0.24842					28	21	2	0	0	0	0.024397	1	6654	6654		47.657	3.5405	1	412620	+		82797	23168	57670	57764	91869	91869					0.0470663434908829
VDSPDSLENI	10	Unmodified	_VDSPDSLENI_					0	0	0		ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.8139038085938	2	544.758943	1087.50333	-1.5056	-0.00082021	-3.3507	-0.0018253	-4.8563	-0.0026455	544.7572247923625	34.046	0.79494	34.096	34.005	34.8	0.050255					23	19	2	0	0	0	0.03519	1	2538	2538		39.253	0	1	55576			82798	5697	57671	57765	91870	91870					-0.03691769106740139
VDSQDSHI	8	Unmodified	_VDSQDSHI_					0	0	0			REV__nc|ENSG00000154040|O75952-2|CABYR	REV__nc|ENSG00000154040|O75952-2|CABYR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7607116699219	2	450.706514	899.398475	-0.19799	-8.9234E-05	3.3481	0.001509	3.1502	0.0014198	450.70801489772833	38.886	0.29049	38.886	38.68	38.97	0					19	7	3	0	0	0	0.027866	1	3307	3307		29.15	0	1	392500	+		82799	36797	57672	57766	91871	91871					-0.055248457926495576
VDSRFDYIE	9	Unmodified	_VDSRFDYIE_					0	0	0		ENSG00000081479|ENST00000649046|LRP2;LRP2|p.V584L|1|0.37|ENSG00000081479|chr2:169277767-169277767|C/A|missense_variant	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	572.2697143554688	2	572.269478	1142.5244	-0.50634	-0.00028976	1.8579	0.0010632	1.3516	0.00077348	572.2703535825093	84.934	1.3264	84.875	84.522	85.848	-0.058136					84	31	5	0	0	0	0.6238	1	10602	10602		51.193	3.5354	1	1305400			82800	1711	57673	57767	91872	91872					-0.041157590072543826
VDSRGLVVL	9	Unmodified	_VDSRGLVVL_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7353210449219	2	479.290017	956.565481	-0.30202	-0.00014476	0.77328	0.00037063	0.47126	0.00022587	479.29050748929654	60.431	0.40755	60.177	60.014	60.421	-0.25373					18	9	2	0	0	0	0.024427	1	6702	6702		34.173	0	1	166010			82801	3167	57674	57768	91873	91873					0.08546046822914377
VDSRTIYV	8	Unmodified	_VDSRTIYV_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7580871582031	2	476.758549	951.502546	0.34901	0.00016639	-1.4907	-0.00071071	-1.1417	-0.00054432	476.75772494847956	103.11	2.084	103.12	102.24	104.32	0.0054245					130	51	5	0	0	0	1.043	1	13286	13286		30.504	3.7075	1	5192800			82802	1386	57675	57769	91874	91874					0.024854810348642786
VDSTTMYEL	9	Unmodified	_VDSTTMYEL_					0	0	0		ENSG00000106392|ENST00000436587|C1GALT1	ENSG00000106392|ENST00000436587|C1GALT1	ENSG00000106392|ENST00000436587|C1GALT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.279052734375	2	529.739165	1057.46378	-0.70948	-0.00037584	-1.3405	-0.00071009	-2.0499	-0.0010859	530.2408581465942	69.464	0.28024	69.464	69.308	69.588	0					11	6	2	0	0	0	0.024381	1	8377	8377		55.504	9.5523	1	99275			82803	2785	57676	57770	91875	91875					-0.06265612381821484
VDTDRYWAH	9	Unmodified	_VDTDRYWAH_					0	0	0			REV__nc|ENSG00000108231|O95970-3|LGI1	REV__nc|ENSG00000108231|O95970-3|LGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.3362426757812	2	581.767437	1161.52032	-1.0759	-0.00062592	-3.4154	-0.001987	-4.4913	-0.0026129	581.765229779341	53.694	0.46704	53.694	53.509	53.976	0					23	12	3	0	0	0	0.024541	1	5861	5861		17.365	0	1	246610	+		82804	21717	57677	57771	91876	91876					-0.053978037102979215
VDTERIMTE	9	Unmodified	_VDTERIMTE_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.3269653320312	2	547.263339	1092.51212	-0.24089	-0.00013183	3.0147	0.0016498	2.7738	0.001518	547.2655096334859	79.831	0.37775	79.681	79.446	79.823	-0.15051					10	8	2	0	0	0	0.024381	1	9531	9531		37.159	1.5408	1	33243			82805	1742	57678	57772	91877	91877					-0.030431187419026173
VDTFVVNKKP	10	Unmodified	_VDTFVVNKKP_					0	0	0		nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.7738037109375	2	573.829506	1145.64446	-0.033103	-1.8996E-05	0.42936	0.00024638	0.39625	0.00022738	573.8294434659413	49.63	1.5121	49.449	48.058	49.57	-0.18071					53	40	2	0	0	0	0.03519	1	4921	4921		19.104	0	1	334370			82806	6573	57679	57773	91878	91878					0.07746274057171831
VDTLQFLL	8	Unmodified	_VDTLQFLL_					0	0	0		TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1;ENST00000554784.2_1_12:56776062-56776206:-|nuORF	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.7735900878906	2	474.773668	947.532783	0.72497	0.0003442	-0.9589	-0.00045526	-0.23393	-0.00011106	474.77314857512465	99.207	1.1754	99.203	98.724	99.899	-0.0038757					63	26	3	0	0	0	0.87148	1	12585	12585		53.351	3.9099	1	2143100			82807	3329	57680	57774	91879	91879					0.056918397000458754
VDTLRSMLL	9	Oxidation (M)	_VDTLRSM(Oxidation (M))LL_		VDTLRSM(1)LL		VDTLRSM(85)LL	0	0	1		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2940673828125	2	532.294442	1062.57433	-0.53236	-0.00028337	-2.7312	-0.0014538	-3.2636	-0.0017372	532.2929520611472	77.717	0.98764	77.717	77.295	78.282	0					35	23	2	0	0	0	0.23085	1	9623	9623		84.916	8.1414	1	2574200			82808	8927	57681	57775	91880	91880		374			0.04554652397064274
VDTLRSMLL	9	Oxidation (M)	_VDTLRSM(Oxidation (M))LL_					0	0	1		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	532.294442	1062.57433	0.21527	0.00011458	-3.6054	-0.0019191	-3.3901	-0.0018045	532.2924725682137	77.909	0.82346	77.698	77.333	78.157	-0.21087	-0.041393	-0.00048058	NaN	84.916	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2653200			82809	8927	57681	57775				374			0.04554652397064274
VDTSISRS	8	Unmodified	_VDTSISRS_					0	0	0			REV__ENSG00000196990|ENST00000673969|FAM163B	REV__ENSG00000196990|ENST00000673969|FAM163B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.8885192871094	2	432.724707	863.43486	0.61369	0.00026556	-1.9189	-0.00083034	-1.3052	-0.00056478	432.72378715745674	21.917	0.42736	21.733	21.584	22.012	-0.18428					11	8	2	0	0	0	0.027866	1	714	714		17.365	5.8539	1	20443	+		82810	28249	57682	57776	91881	91881					-0.002319688959460109
VDTTIFSRRW	10	Unmodified	_VDTTIFSRRW_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	640.777587890625	2	640.840936	1279.66732	-1.6551	-0.0010606	-0.096668	-6.1949E-05	-1.7518	-0.0011226	640.840746903207	51.872	0.39839	51.753	51.54	51.939	-0.11876					24	10	4	0	0	0	0.03519	1	5333	5333		39.253	8.9351	1	273510	+		82811	23388	57683	57777	91882	91882					0.03867293174675979
VDTTIFSRRW	10	Unmodified	_VDTTIFSRRW_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	640.7778930664062	2	640.840936	1279.66732	-0.070917	-4.5446E-05	-2.8615	-0.0018337	-2.9324	-0.0018792	640.8390795374506	51.955	0.47445	51.771	51.598	52.072	-0.18405					24	12	3	0	0	0	0.03519	1	5338	5338		31.53	9.5699	1	386860	+		82812	23388	57683	57777	91883	91883					0.03867293174675979
VDVCWLVL	8	Unmodified	_VDVCWLVL_					0	0	0			REV__ENST00000274712.7_1_5:140085673-140085886:+|nuORF	REV__ENST00000274712.7_1_5:140085673-140085886:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.7806701660156	2	473.756964	945.499375	1.8719	0.00088681	3.7722	0.0017871	5.6441	0.0026739	473.758660742965	24.271	1.3569	24.09	23.626	24.983	-0.18089					47	30	3	0	0	0	0.027866	1	955	955		54.765	0	1	388540	+		82813	29839	57684	57778	91884	91884					0.024445146564858078
VDVGPLAVRA	10	Unmodified	_VDVGPLAVRA_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1;REV__ENST00000532415.5_1_16:18477017-18479494:-|nuORF	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.27471923828125	2	498.795466	995.57638	0.81861	0.00040832	-0.60241	-0.00030048	0.2162	0.00010784	498.7948423123714	20.459	0.63868	20.264	19.993	20.632	-0.19577					25	12	3	0	0	0	0.03519	1	515	515		29.17	0	1	92227	+		82814	19884;34581	57685	57779	91885	91885					0.07841449197178463
VDVHHRRS	8	Unmodified	_VDVHHRRS_					0	0	0		chr7:139542748-139544231|157|32.04|0.02|10.5|+|0|None,CLEC2L|2	chr7:139542748-139544231|157|32.04|0.02|10.5|+|0|None,CLEC2L|2	chr7:139542748-139544231|157|32.04|0.02|10.5|+|0|None,CLEC2L|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2947082519531	2	503.270481	1004.52641	-0.22879	-0.00011514	2.8794	0.0014491	2.6506	0.001334	503.27175479989677	53.876	0.40498	53.631	53.458	53.863	-0.2453					21	12	2	0	0	0	0.027866	1	5699	5699		16.473	0	1	623590			82815	416	57686	57780	91886	91886					0.024327593118982804
VDVIEYGLL	9	Unmodified	_VDVIEYGLL_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2562255859375	2	510.784233	1019.55391	-1.9265	-0.00098402	-1.5988	-0.00081663	-3.5253	-0.0018006	510.7832931706195	38.311	0.55495	38.339	38.057	38.612	0.027275					22	15	2	0	0	0	0.024466	1	3101	3101		18.324	0.95945	1	239480	+		82816	27225	57687	57781	91887	91887					0.04491805008922256
VDVILRKTN	9	Unmodified	_VDVILRKTN_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2824096679688	2	529.321848	1056.62914	-0.84956	-0.00044969	-0.98296	-0.0005203	-1.8325	-0.00097	529.3220329873458	40.119	0.36368	40.142	39.873	40.237	0.023006					26	9	4	0	0	0	0.024418	1	3424	3424		37.812	3.639	1	346980	+		82817	24032	57688	57782	91888	91888					0.10309407260001535
VDVKKVERA	9	Unmodified	_VDVKKVERA_					0	0	0			REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF	REV__ENST00000421108.1_1_17:18419857-18420688:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.3139038085938	2	522.314023	1042.61349	-0.23038	-0.00012033	0.22206	0.00011599	-0.0083158	-4.3435E-06	522.3140313228869	32.299	0.84069	32.062	31.74	32.581	-0.23667					46	19	4	0	0	0	0.30449	1	2234	2234		75.043	4.2271	1	1607300	+		82818	32176	57689	57783	91889	91889					0.09389120742957857
VDVLQVKL	8	Unmodified	_VDVLQVKL_					0	0	0		ENST00000474289.6_1_6:127610971-127611001:-|nuORF	ENST00000474289.6_1_6:127610971-127611001:-|nuORF	ENST00000474289.6_1_6:127610971-127611001:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	457.2904052734375	2	457.289485	912.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.935	1	85.959	85.459	86.459	0.023666								0	0	0	0.26985	1	10712	10712		124.59	5.0374	1				82819	15028	57690	57784	91890	91890					0.10463832454001931
VDVLRKKV	8	Unmodified	_VDVLRKKV_					0	0	0		ENSG00000151338|ENST00000684589|MIPOL1;nc|ENSG00000151338|Q8TD10-2|MIPOL1	ENSG00000151338|ENST00000684589|MIPOL1	ENSG00000151338|ENST00000684589|MIPOL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2952575683594	2	478.816202	955.617851	-0.37597	-0.00018002	0.90082	0.00043133	0.52486	0.00025131	478.81631341717497	23.445	1.0732	23.265	22.929	24.002	-0.17989					31	24	3	0	0	0	0.027866	1	1021	1021		50.025	0	1	181040			82820	6196	57691	57785	91891	91891					0.13826629956508896
VDVPVVVMPE	10	Unmodified	_VDVPVVVMPE_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	542.3082275390625	2	542.291368	1082.56818	-0.73211	-0.00039702	1.7597	0.00095424	1.0275	0.00055723	542.292054061317	70.855	0.16864	70.866	70.769	70.937	0.010735					6	3	2	0	0	0	0.03519	1	8486	8486		25.574	0	1	71413	+		82821	22566	57692	57786	91892	91892					0.030201341655583747
VDVRYPIII	9	Unmodified	_VDVRYPIII_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.3158569335938	2	544.329142	1086.64373	-0.28864	-0.00015712	0.092101	5.0133E-05	-0.19654	-0.00010698	544.3287079482375	86.043	0.47633	85.906	85.66	86.136	-0.13734					24	10	3	0	0	0	0.024506	1	10448	10448		10.866	0	1	121560	+		82822	20191	57693	57787	91893	91893					0.10387479408132094
VDVSAVWWN	9	Unmodified	_VDVSAVWWN_					0	0	0			REV__ENSG00000151552|ENST00000281243|QDPR	REV__ENSG00000151552|ENST00000281243|QDPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.2957763671875	2	538.263999	1074.51345	-0.94936	-0.00051101	0.43843	0.00023599	-0.51094	-0.00027502	538.7663384603014	37.608	0.31885	37.608	37.45	37.769	0					12	8	2	0	0	0	0.024436	1	3069	3069		38.806	20.544	1	184010	+		82823	24777	57694	57788	91894	91894					-0.020831165908703042
VDVSDEMSK	9	Unmodified	_VDVSDEMSK_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2749938964844	2	505.228965	1008.44338	-0.44959	-0.00022714	-0.67656	-0.00034182	-1.1261	-0.00056896	505.22924756777155	56.554	0.42088	56.554	56.388	56.809	0					20	11	3	0	0	0	0.024405	1	6346	6346		27.882	5.9224	1	123430	+		82824	27773	57695	57789	91895	91895					-0.060507830416327124
VDVSPPKVEA	10	Unmodified	_VDVSPPKVEA_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.S3032Lfs*13|1|0.21|ENSG00000185567|chr14:104946358-104946358|G/-|frameshift_variant;AHNAK2|p.S2674*|1|0.22|ENSG00000185567|chr14:104947429-104947430|AG/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.766357421875	2	520.784764	1039.55498	-1.0626	-0.0005534	-1.4209	-0.00073997	-2.4835	-0.0012934	521.2874192018246	47.288	0.3992	47.347	47.247	47.647	0.059097					12	11	2	0	0	0	0.03519	1	4702	4702		62.107	12.083	1	521330			82825	9453	57696	57790	91896	91896					0.03678019377821329
VDVTVNSPK	9	Unmodified	_VDVTVNSPK_					0	0	0			REV__ENSG00000135917|ENST00000644224|SLC19A3	REV__ENSG00000135917|ENST00000644224|SLC19A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.2921447753906	2	479.763832	957.513111	0.49094	0.00023554	1.3694	0.00065699	1.8604	0.00089253	479.764164921481	32.039	0.21295	31.803	31.611	31.824	-0.23667					5	4	2	0	0	0	0.024323	1	2161	2161		44.117	0	1	28377	+		82826	23597	57697	57791	91897	91897					0.032654636892857525
VDWFSLASVI	10	Unmodified	_VDWFSLASVI_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.8109130859375	2	568.802957	1135.59136	0.35916	0.00020429	-3.3049	-0.0018798	-2.9457	-0.0016755	568.8009274738856	56.547	0.65763	56.344	56.051	56.709	-0.20282					47	16	4	0	0	0	0.03519	1	6085	6085		29.15	10.887	1	1174000			82827	8319	57698	57792	91898	91898					0.028988962745188473
VDWGVLHST	9	Unmodified	_VDWGVLHST_					0	0	0			REV__ENST00000496131.1_1_1:44442124-44442513:+|nuORF	REV__ENST00000496131.1_1_1:44442124-44442513:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.841796875	2	507.256174	1012.49779	-0.024441	-1.2398E-05	-0.047926	-2.4311E-05	-0.072367	-3.6709E-05	507.25593091367836	65.63	0.40398	65.667	65.455	65.859	0.037384					18	10	2	0	0	0	0.02435	1	7723	7723		42.396	3.59	1	155180	+		82828	33817	57699	57793	91899	91899					-0.0079540310792936
VDWNDTKS	8	Unmodified	_VDWNDTKS_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36;DHX36|p.R975K|1|0.09|ENSG00000174953|chr3:154276274-154276274|C/T|missense_variant	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.26263427734375	2	482.722164	963.429775	0.088092	4.2524E-05	3.2467	0.0015672	3.3348	0.0016098	482.72366042473146	36.573	2.2718	36.573	35.531	37.803	0					74	61	2	0	0	0	0.027866	1	2790	2790		47.916	13.743	1	223920			82829	8515	57700	57794	91900	91900					-0.05340272758564879
VDWQPVLT	8	Unmodified	_VDWQPVLT_					0	0	0		ENSG00000234278|ENST00000434815|PRR20E;ENSG00000229665|ENST00000544357|PRR20C;ENSG00000227151|ENST00000452123|PRR20D;ENSG00000204919|ENST00000377931|PRR20A;ENSG00000204918|ENST00000377930|PRR20B	ENSG00000234278|ENST00000434815|PRR20E	ENSG00000234278|ENST00000434815|PRR20E	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2901306152344	2	479.255643	956.496732	0.22492	0.00010779	-3.4984	-0.0016766	-3.2735	-0.0015688	479.25359061260133	25.932	0.17061	26.012	25.879	26.049	0.08009					5	3	2	0	0	0	0.027866	1	1206	1206		73.975	13.003	1	32249			82830	10390	57701	57795	91901	91901					0.01674382523174245
VDYIENRF	8	Unmodified	_VDYIENRF_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2587280273438	2	528.261456	1054.50836	-0.27069	-0.00014299	0.27114	0.00014324	0.00045918	2.4257E-07	528.2613686860421	61.694	0.52788	61.48	61.209	61.737	-0.21375					34	12	4	0	0	0	0.59392	1	6921	6921		76.847	0.072494	1	995000	+		82831	25524	57702	57796	91902	91902					-0.016714204534764576
VDYIENRF	8	Unmodified	_VDYIENRF_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	528.261456	1054.50836	-0.27069	-0.00014299	0.27114	0.00014324	0.00045918	2.4257E-07	528.2613686860421	61.694	0.52788	61.48	61.209	61.737	-0.21375	0.023508	0.0003756	NaN	76.847	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995000	+		82832	25524	57702	57796							-0.016714204534764576
VDYIENRF	8	Unmodified	_VDYIENRF_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.261456	1054.50836	-1.1135	-0.00058822	1.5172	0.00080147	0.40368	0.00021325	528.2615190971659	61.565	0.68412	61.387	61.12	61.804	-0.17782	-0.06969	0.0016921	NaN	76.847	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	881810	+		82833	25524	57702	57796							-0.016714204534764576
VDYIENRF	8	Unmodified	_VDYIENRF_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.261456	1054.50836	-0.15988	-8.4461E-05	-0.5207	-0.00027507	-0.68058	-0.00035953	528.2610705180334	61.76	0.64533	61.503	61.175	61.821	-0.25725	0.046182	-0.000461	NaN	76.847	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753340	+		82834	25524	57702	57796							-0.016714204534764576
VDYKSLDDI	9	Unmodified	_VDYKSLDDI_					0	0	0			REV__nc|ENSG00000091181|Q01344-3|IL5RA	REV__nc|ENSG00000091181|Q01344-3|IL5RA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7869873046875	2	534.266404	1066.51826	0.31593	0.00016879	2.3265	0.001243	2.6424	0.0014117	534.2666348801182	78.407	0.61465	78.215	77.891	78.506	-0.1921					36	14	3	0	0	0	0.024292	1	9637	9637		58.782	0	1	120250	+		82835	20905	57703	57797	91903	91903					-0.012342772387455625
VDYKSLDDI	9	Unmodified	_VDYKSLDDI_					0	0	0			REV__nc|ENSG00000091181|Q01344-3|IL5RA	REV__nc|ENSG00000091181|Q01344-3|IL5RA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.7864990234375	2	534.266404	1066.51826	-0.80702	-0.00043116	3.113	0.0016632	2.306	0.001232	534.2670248544923	78.22	0.74308	78.236	77.905	78.649	0.015907					28	17	2	0	0	0	0.024209	1	9572	9572		66.429	9.7082	1	181010	+		82836	20905	57703	57797	91904	91904					-0.012342772387455625
VDYKVSSCK	9	Unmodified	_VDYKVSSCK_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7342529296875	2	514.757692	1027.50083	-0.1885	-9.7032E-05	-0.871	-0.00044835	-1.0595	-0.00054539	515.2594599578215	42.146	0.26274	42.023	41.853	42.116	-0.12299					10	6	2	0	0	0	0.024541	1	3755	3755		19.997	0	1	94099	+		82837	22933	57704	57798	91905	91905					-0.01181896045409303
VDYLVDLAP	9	Unmodified	_VDYLVDLAP_					0	0	0			REV__ENSG00000107581|ENST00000369144|EIF3A	REV__ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2941589355469	2	502.768583	1003.52261	-0.081874	-4.1163E-05	-4.2324	-0.0021279	-4.3143	-0.0021691	502.7672777846209	54.107	0.37458	53.96	53.784	54.159	-0.14723					15	10	2	0	0	0	0.024294	1	5840	5840		55.504	19.886	1	83139	+		82838	21674	57705	57799	91906	91906					0.020992319748074806
VDYRGFGDS	9	Unmodified	_VDYRGFGDS_					0	0	0		nc|ENSG00000131969|Q7Z5M8-5|ABHD12B;nc|ENSG00000131969|Q7Z5M8-2|ABHD12B;ENSG00000131969|ENST00000337334|ABHD12B	nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2298278808594	2	508.227613	1014.44067	0.4477	0.00022753	0.12147	6.1733E-05	0.56917	0.00028927	508.2275354112543	110.47	0.67	110.32	110.09	110.76	-0.14888					40	23	2	0	0	0	1.0402	1	13541	13541		12.207	0	1	17067			82839	4564	57706	57800	91907	91907					-0.0659687038427137
VDYRIILN	8	Unmodified	_VDYRIILN_					0	0	0			REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2480773925781	2	503.290017	1004.56548	-0.037484	-1.8866E-05	-0.35884	-0.0001806	-0.39632	-0.00019947	503.2891382571879	61.348	0.5208	61.121	60.974	61.495	-0.22663					21	13	2	0	0	0	0.027866	1	7069	7069		37.159	18.835	1	322370	+		82840	20209	57707	57801	91908	91908					0.06338046822907017
VDYRIILN	8	Unmodified	_VDYRIILN_					0	0	0			REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.77313232421875	2	503.290017	1004.56548	-0.0090362	-4.5478E-06	-2.4021	-0.0012089	-2.4111	-0.0012135	503.7903820374056	59.19	0.68922	59.002	58.858	59.547	-0.18795					12	7	2	0	0	0	0.027866	1	6555	6555		35.618	0	1	421870	+		82841	20209	57707	57801	91909	91909					0.06338046822907017
VDYVFLVRS	9	Unmodified	_VDYVFLVRS_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.7686767578125	2	549.303124	1096.5917	-0.52583	-0.00028884	0.64716	0.00035548	0.12132	6.6642E-05	549.3032427496162	83.407	1.2871	83.317	82.83	84.117	-0.090446					46	29	2	0	0	0	0.024477	1	10433	10433		20.947	0	1	85957	+		82842	26855	57708	57802	91910	91910					0.04726315994366814
VEAAAEAVKL	10	Unmodified	_VEAAAEAVKL_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-4|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.78717041015625	2	500.787307	999.560061	-0.7892	-0.00039522	0.89849	0.00044995	0.10928	5.4727E-05	500.7875275158058	72.37	0.67551	72.171	71.949	72.625	-0.19811					27	15	2	0	0	0	0.77808	1	8473	8473		62.107	3.8775	1	908850			82843	6775	57709	57803	91911	91911					0.060263232404167866
VEAALKNLPLV	11	Unmodified	_VEAALKNLPLV_					0	0	0		ENST00000474422.1_1_2:223795406-223797999:+|nuORF;ENSG00000123983|ENST00000357430|ACSL3	ENST00000474422.1_1_2:223795406-223797999:+|nuORF	ENST00000474422.1_1_2:223795406-223797999:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.859375	2	583.860806	1165.70706	0.62502	0.00036493	-3.9432	-0.0023023	-3.3182	-0.0019374	583.8583386779724	97.147	1.1257	97.011	96.613	97.738	-0.13671					80	24	4	0	0	0	1.0777	1	11987	11987		17.468	0.75062	1	1483900			82844	4003	57710	57804	91912	91912					0.1308342012534922
VEAAMGAPEPS	11	Unmodified	_VEAAMGAPEPS_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7484741210938	2	529.744782	1057.47501	0.406	0.00021508	-1.8849	-0.00099853	-1.4789	-0.00078346	529.7430137961989	84.957	0.78804	84.798	84.488	85.276	-0.15869					31	18	2	0	0	0	0.024778	1	10345	10345		52.937	39.161	1	104220	+		82845	27307	57711	57805	91913	91913					-0.05142790287709431
VEAARLGI	8	Unmodified	_VEAARLGI_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2121887207031	2	414.750527	827.486502	-0.2804	-0.00011629	-3.7229	-0.0015441	-4.0033	-0.0016604	414.75101147580466	29.15	0.24044	29.229	29.128	29.368	0.078344					9	5	2	0	0	0	0.027866	1	1709	1709		31.955	1.4512	1	25701			82846	1947	57712	57806	91914	91914					0.06585819588610775
VEAAYLRGHI	10	Unmodified	_VEAAYLRGHI_					0	0	0		ENSG00000131067|ENST00000336431|GGT7	ENSG00000131067|ENST00000336431|GGT7	ENSG00000131067|ENST00000336431|GGT7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.8113403320312	2	564.811648	1127.60874	-0.55541	-0.0003137	-1.628	-0.0009195	-2.1834	-0.0012332	564.8106150874135	108.46	0.30607	108.47	108.27	108.58	0.00457					39	15	3	0	0	0	1.0992	1	13770	13770		32.812	3.6424	1	5482600			82847	4492	57713	57807	91915	91915					0.050042366001889604
VEADKELV	8	Unmodified	_VEADKELV_					0	0	0			REV__ENSG00000121749|ENST00000485960|TBC1D15	REV__ENSG00000121749|ENST00000485960|TBC1D15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2320251464844	2	451.745108	901.475663	-0.62084	-0.00028046	2.5627	0.0011577	1.9418	0.00087721	451.74588870967114	35.934	0.70338	35.934	35.492	36.195	0					36	18	3	0	0	0	0.027866	1	2803	2803		65.803	19.851	1	500390	+		82848	22605	57714	57808	91916	91916					0.020983724236771195
VEADRLQK	8	Unmodified	_VEADRLQK_					0	0	0			REV__nc|ENSG00000105357|Q7Z406|MYH14	REV__nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.2525939941406	2	479.769448	957.524344	-0.44492	-0.00021346	-1.4318	-0.00068693	-1.8767	-0.00090039	479.76907655815194	35.496	0.66002	35.54	35.343	36.003	0.04406					26	16	2	0	0	0	0.027866	1	2692	2692		45.952	0	1	187500	+		82849	21516	57715	57809	91917	91917					0.043882857834205424
VEAELELAR	9	Unmodified	_VEAELELAR_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.3087158203125	2	515.282389	1028.55022	0.012141	6.2559E-06	-0.86749	-0.000447	-0.85535	-0.00044075	515.2828995414217	87.528	0.33069	87.528	87.321	87.651	0					10	7	2	0	0	0	0.024261	1	10998	10998		54.776	5.3348	1	51384	+		82850	24041	57716	57810	91918	91918					0.037091352350216766
VEAGRDIL	8	Unmodified	_VEAGRDIL_					0	0	0			REV__ANKRD50|p.I1094Sfs*12|1|0.07|ENSG00000151458|chr4:124669997-124669998|-/CAAATAGCTCTGGTAGTACTGGTGGAGGGGA|frameshift_variant	REV__ANKRD50|p.I1094Sfs*12|1|0.07|ENSG00000151458|chr4:124669997-124669998|-/CAAATAGCTCTGGTAGTACTGGTGGAGGGGA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.7553405761719	2	436.745442	871.476331	0.24587	0.00010738	2.9605	0.001293	3.2063	0.0014003	436.74555939747904	22.758	0.74654	22.569	22.327	23.074	-0.18894					43	15	5	0	0	0	0.027866	1	851	851		93.195	10.89	1	85713	+		82851	19146	57717	57811	91919	91919					0.03545211863365694
VEAGRDIL	8	Unmodified	_VEAGRDIL_					0	0	0			REV__ANKRD50|p.I1094Sfs*12|1|0.07|ENSG00000151458|chr4:124669997-124669998|-/CAAATAGCTCTGGTAGTACTGGTGGAGGGGA|frameshift_variant	REV__ANKRD50|p.I1094Sfs*12|1|0.07|ENSG00000151458|chr4:124669997-124669998|-/CAAATAGCTCTGGTAGTACTGGTGGAGGGGA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7552185058594	2	436.745442	871.476331	-0.46083	-0.00020126	1.1954	0.00052207	0.73453	0.0003208	436.74581883724056	22.808	0.73657	22.623	22.415	23.151	-0.18539					18	15	2	0	0	0	0.027866	1	850	850		76.774	5.4784	1	90827	+		82852	19146	57717	57811	91920	91920					0.03545211863365694
VEAGSEKLY	9	Unmodified	_VEAGSEKLY_					0	0	0			REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.2557067871094	2	498.25584	994.497126	-0.86216	-0.00042958	1.168	0.00058195	0.30582	0.00015237	498.2562842467697	62.235	0.97144	62.057	61.412	62.383	-0.17781					56	24	4	0	0	0	0.53979	1	6990	6990		56.721	1.2168	1	2617800	+		82853	27697	57718	57812	91921	91921					-0.0003424254762194323
VEAIFLVIL	9	Unmodified	_VEAIFLVIL_					0	0	0		MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.7519836425781	2	508.823161	1015.63177	-0.03619	-1.8414E-05	-3.951	-0.0020104	-3.9872	-0.0020288	508.82106685285544	43.604	0.3971	43.634	43.45	43.847	0.030827					22	10	3	0	0	0	0.024183	1	4032	4032		60.294	0	1	360160			82854	6220	57719	57813	91922	91922					0.12457862664939512
VEAIKKVK	8	Unmodified	_VEAIKKVK_					0	0	0		nc|ENSG00000133878|Q9BV47-2|DUSP26;ENSG00000133878|ENST00000256261|DUSP26	nc|ENSG00000133878|Q9BV47-2|DUSP26	nc|ENSG00000133878|Q9BV47-2|DUSP26	MSMS	OPSCC_40_ClassI_Rep-3	6	457.80535888671875	2	457.805303	913.596052	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.286	1	23.095	22.595	23.595	-0.19117								0	0	0	0.66038	1	877	877		44.117	0	1				82855	4738	57720	57814	91923	91923					0.13579825207932572
VEALDLRIT	9	Unmodified	_VEALDLRIT_					0	0	0		ENST00000580948.1_1_17:70416883-70417330:-|nuORF	ENST00000580948.1_1_17:70416883-70417330:-|nuORF	ENST00000580948.1_1_17:70416883-70417330:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.7429809570312	2	515.300581	1028.58661	-0.16322	-8.4109E-05	0.34596	0.00017827	0.18274	9.4165E-05	515.3005413249729	69.687	0.56976	69.687	69.423	69.993	0					29	13	3	0	0	0	0.024427	1	8435	8435		14.137	0	1	681930			82856	17155	57721	57815	91924	91924					0.07346012131756652
VEALGKELCT	10	Unmodified	_VEALGKELCT_					0	0	0			REV__ENSG00000131016|ENST00000402676|AKAP12	REV__ENSG00000131016|ENST00000402676|AKAP12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.8004150390625	2	531.778625	1061.5427	-0.43961	-0.00023377	2.3673	0.0012589	1.9277	0.0010251	531.7796118312946	95.764	0.35083	95.608	95.4	95.751	-0.15646					10	7	2	0	0	0	0.03519	1	11816	11816		23.523	2.5758	1	54612	+		82857	23177	57722	57816	91925	91925					0.014386596431222642
VEALLSRTV	9	Unmodified	_VEALLSRTV_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENSG00000078596|ENST00000373298|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.295166015625	2	494.295299	986.576045	-0.70862	-0.00035027	0.577	0.00028521	-0.13162	-6.506E-05	494.2955265778733	53.287	0.54632	53.14	52.873	53.42	-0.14723					55	14	5	0	0	0	0.32811	1	5733	5733		71.877	0.58177	1	5214300			82858	1639	57723	57817	91926	91926					0.08222029477326487
VEARLQPTP	9	Unmodified	_VEARLQPTP_					0	0	0			REV__nc|ENSG00000172575|O95267-2|RASGRP1	REV__nc|ENSG00000172575|O95267-2|RASGRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.3239440917969	2	505.785099	1009.55564	0.69714	0.0003526	-4.1358	-0.0020918	-3.4386	-0.0017392	506.28438002041327	79.587	0.12646	79.341	79.278	79.405	-0.2465					4	2	2	0	0	0	0.023837	1	9501	9501		64.207	0	1	21750	+		82859	26689	57724	57818	91927	91927					0.05124858817509903
VEARRYSM	8	Unmodified	_VEARRYSM_					0	0	0			REV__ENST00000520316.5_1_8:28627126-28633440:-|nuORF	REV__ENST00000520316.5_1_8:28627126-28633440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.79876708984375	2	506.255651	1010.49675	-0.99478	-0.00050362	-0.050572	-2.5602E-05	-1.0454	-0.00052922	506.25514642298936	80.873	0.43726	80.722	80.556	80.994	-0.15168					14	10	2	0	0	0	0.027866	1	10026	10026		37.159	8.0096	1	62907	+		82860	21430	57725	57819	91928	91928					-0.00807940748461533
VEARVYGY	8	Unmodified	_VEARVYGY_					0	0	0			REV__ENSG00000162695|ENST00000357650|SLC30A7	REV__ENSG00000162695|ENST00000357650|SLC30A7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	477.7559814453125	2	478.745442	955.476331	-0.052998	-2.5373E-05	-0.023888	-1.1436E-05	-0.076886	-3.6809E-05	478.74543331975747	49.74	0.7156	49.461	49.123	49.839	-0.27977					41	18	3	0	0	0	0.027866	1	4967	4967		14.664	0	1	744010	+		82861	25476	57726	57820	91929	91929					-0.003187881366216061
VEASKKSY	8	Unmodified	_VEASKKSY_					0	0	0		ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7589111328125	2	456.245275	910.475997	0.33402	0.0001524	0.45996	0.00020985	0.79398	0.00036225	456.24660653394267	47.308	0.50371	47.308	46.892	47.395	0					22	13	3	0	0	0	0.027866	1	4703	4703		71.296	37.123	1	198120			82862	7482	57727	57821	91930	91930					0.017177921435290955
VEAVAADVR	9	Unmodified	_VEAVAADVR_					0	0	0		ENSG00000134253|ENST00000256649|TRIM45;nc|ENSG00000134253|Q9H8W5-2|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.25634765625	2	465.256174	928.497795	1.3734	0.000639	-1.4759	-0.00068665	-0.10242	-4.7653E-05	465.2555335000608	59.394	0.80378	59.194	58.923	59.727	-0.20016					81	21	5	0	0	0	0.67687	1	6749	6749		47.657	0	1	14947000			82863	4771	57728	57822	91931	91931					0.030685968920806772
VEAVAIKR	8	Unmodified	_VEAVAIKR_					0	0	0			REV__ENST00000419233.6_1_3:20225478-20227592:-|nuORF	REV__ENST00000419233.6_1_3:20225478-20227592:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2741394042969	2	443.279452	884.544351	0.18678	8.2798E-05	-0.71623	-0.00031749	-0.52944	-0.00023469	443.2788730404854	50.495	0.39305	50.346	50.067	50.46	-0.14915					35	11	5	0	0	0	0.027866	1	5276	5276		18.324	11.131	1	1832000	+		82864	32137	57729	57823	91932	91932					0.09746081514037996
VEAVTGRSAIL	11	Unmodified	_VEAVTGRSAIL_					0	0	0		ENSG00000158786|ENST00000375102|PLA2G2F;nc|ENSG00000158786|Q9BZM2|PLA2G2F	ENSG00000158786|ENST00000375102|PLA2G2F	ENSG00000158786|ENST00000375102|PLA2G2F	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3237915039062	2	558.324588	1114.63462	0.61136	0.00034134	-0.57434	-0.00032067	0.037017	2.0668E-05	558.3242932364805	98.782	1.2337	98.646	98.19	99.423	-0.13626					48	29	3	0	0	0	1.0499	1	12244	12244		25.126	1.6033	1	245640			82865	6701	57730	57824	91933	91933					0.081890860518115
VECIRYNF	8	Unmodified	_VECIRYNF_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.279541015625	2	522.252577	1042.4906	0.62211	0.0003249	0.67783	0.000354	1.2999	0.0006789	522.7546709144373	59.829	0.35131	59.829	59.637	59.988	0					12	9	2	0	0	0	0.027866	1	6842	6842		31.955	0	1	232920			82866	1044	57731	57825	91934	91934					-0.028944589799948517
VEDQFVHSGG	10	Unmodified	_VEDQFVHSGG_					0	0	0			REV__ENSG00000165733|ENST00000374518|BMS1	REV__ENSG00000165733|ENST00000374518|BMS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2868041992188	2	537.74617	1073.47779	-1.1557	-0.00062146	-3.1208	-0.0016782	-4.2764	-0.0022996	537.7445178275349	65.937	0.20284	65.686	65.603	65.806	-0.25112					6	4	2	0	0	0	0.03519	1	7548	7548		32.812	7.2384	1	56233	+		82867	25924	57732	57826	91935	91935					-0.05601198838508026
VEDQGSPPLQ	10	Unmodified	_VEDQGSPPLQ_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7289428710938	2	535.261653	1068.50875	0.54674	0.00029265	-3.5912	-0.0019222	-3.0445	-0.0016296	535.2589417523733	59.551	0.59819	59.353	59.091	59.689	-0.19742					25	14	3	0	0	0	0.03519	1	6633	6633		24.519	3.5723	1	262860			82868	3302	57733	57827	91936	91936					-0.022760455242632815
VEDVCSPLGVL	11	Unmodified	_VEDVCSPLGVL_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.2958374023438	2	565.791732	1129.56891	-0.34427	-0.00019478	1.4145	0.00080029	1.0702	0.0006055	565.7923484398424	100.33	0.99588	100.34	100.13	101.13	0.010117					36	23	3	0	0	0	1.018	1	12824	12824		32.812	0.85756	1	429600	+		82869	22407	57734	57828	91937	91937					0.009309288145914252
VEDVQNQVH	9	Unmodified	_VEDVQNQVH_					0	0	0			REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.3191528320312	2	534.259445	1066.50434	1.0771	0.00057546	2.0562	0.0010986	3.1333	0.001674	534.2604137998682	18.982	0.83589	18.982	18.382	19.218	0					20	16	2	0	0	0	0.024541	1	379	379		21.96	1.013	1	60443	+		82870	22354	57735	57829	91938	91938					-0.026255099471882204
VEDVQNQVH	9	Unmodified	_VEDVQNQVH_					0	0	0			REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.259445	1066.50434	-0.44572	-0.00023813	3.8427	0.002053	3.397	0.0018149	534.2612291786587	19.195	0.78633	19.077	18.512	19.299	-0.11872	0.047105	0.0010264	NaN	10.265	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42789	+		82871	22354	57735	57829							-0.026255099471882204
VEDVRWRKPKP	11	Unmodified	_VEDVRWRKPKP_					0	0	0			REV__ENSG00000233232|ENST00000452313|NPIPB7	REV__ENSG00000233232|ENST00000452313|NPIPB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.2979431152344	3	470.605249	1408.79392	-0.034109	-1.6052E-05	-0.14442	-6.7966E-05	-0.17853	-8.4017E-05	470.6051754932334	32.962	0.4916	32.731	32.544	33.036	-0.23107					20	11	2	0	0	0	0.024792	1	2317	2317		24.232	0	1	105040	+		82872	28182	57736	57830	91939	91939					0.10587219399781134
VEEAPKND	8	Unmodified	_VEEAPKND_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7843933105469	2	451.216714	900.418876	-0.31583	-0.00014251	-1.0353	-0.00046716	-1.3512	-0.00060966	451.21588132551614	28.566	0.28989	28.562	28.499	28.789	-0.0042019					8	6	2	0	0	0	0.027866	1	1675	1675		63.306	2.3343	1	24848	+		82873	22314	57737	57831	91940	91940					-0.035316751328537066
VEEAPLGIL	9	Unmodified	_VEEAPLGIL_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.31036376953125	2	470.771126	939.527698	1.5994	0.00075294	-4.049	-0.0019062	-2.4497	-0.0011532	470.7689141513411	20.469	0.54158	20.538	20.316	20.858	0.068901					14	10	2	0	0	0	0.024541	1	476	476		26.796	5.8492	1	53399	+		82874	25683	57738	57832	91941	91941					0.05551535837423671
VEEEKRKK	8	Unmodified	_VEEEKRKK_					0	0	0		nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;ENST00000466442.6_1_11:3023374-3028178:-|nuORF	nc|ENSG00000110619|P49589|CARS1	nc|ENSG00000110619|P49589|CARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3038330078125	2	523.303655	1044.59276	-0.3005	-0.00015725	0.32198	0.00016849	0.021478	1.124E-05	523.3036719773831	99.834	1.216	99.834	99.358	100.57	0					55	29	3	0	0	0	0.99042	1	12786	12786		38.806	0	1	1346600			82875	3050	57739	57833	91942	91942					0.07224530363282611
VEEFLNTLN	9	Unmodified	_VEEFLNTLN_					0	0	0		ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2	ENSG00000152527|ENST00000282406|PLEKHH2	ENSG00000152527|ENST00000282406|PLEKHH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7919311523438	2	539.774396	1077.53424	-0.23065	-0.0001245	-0.32782	-0.00017695	-0.55847	-0.00030145	540.2750478814803	72.581	1.0844	72.591	72.023	73.107	0.0097733					44	26	2	0	0	0	0.0242	1	8802	8802		42.864	3.6114	1	279240			82876	6279	57740	57834	91943	91943					-0.0014257100183385774
VEEGDHLTM	9	Unmodified	_VEEGDHLTM_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8324584960938	2	515.729132	1029.44371	0.79161	0.00040825	-4.3976	-0.002268	-3.606	-0.0018597	515.7266395584559	18.231	0.19491	18.075	17.953	18.148	-0.15637					5	3	2	0	0	0	0.024541	1	272	272		23.042	15.352	1	11068			82877	2329	57741	57835	91944	91944					-0.06983363321796787
VEEIRKVV	8	Unmodified	_VEEIRKVV_					0	0	0		TGFBR1|p.M441I|1|0.12|ENSG00000106799|chr9:99147721-99147721|G/C|missense_variant	TGFBR1|p.M441I|1|0.12|ENSG00000106799|chr9:99147721-99147721|G/C|missense_variant	TGFBR1|p.M441I|1|0.12|ENSG00000106799|chr9:99147721-99147721|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2815246582031	2	486.297842	970.581131	-0.29253	-0.00014226	-2.9327	-0.0014261	-3.2252	-0.0015684	486.29684529440874	89.419	0.58813	89.419	89.186	89.774	0					20	13	2	0	0	0	0.027866	1	11336	11336		55.504	0	1	240880			82878	38066	57742	57836	91945	91945					0.09466333339946686
VEEKTQPD	8	Unmodified	_VEEKTQPD_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2953796386719	2	473.229822	944.445091	0.21993	0.00010408	2.0444	0.00096747	2.2643	0.0010715	473.2305620655169	34.275	0.18206	34.05	33.997	34.179	-0.22412					6	4	2	0	0	0	0.027866	1	2512	2512		49.442	8.6634	1	43137	+		82879	22428	57743	57837	91946	91946					-0.029354059613751815
VEELEEKT	8	Unmodified	_VEELEEKT_					0	0	0			REV__nc|ENSG00000143106|P28066-2|PSMA5	REV__nc|ENSG00000143106|P28066-2|PSMA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7623291015625	2	488.745305	975.476056	0.0030292	1.4805E-06	2.1023	0.0010275	2.1053	0.001029	488.74608163171325	36.876	0.69051	36.813	36.508	37.198	-0.063389					38	17	3	0	0	0	0.027866	1	2967	2967		35.618	13.658	1	907300	+		82880	24199	57744	57838	91947	91947					-0.012662526471444835
VEELEENISH	10	Unmodified	_VEELEENISH_					0	0	0		nc|ENSG00000157827|Q96PY5|FMNL2;FMNL2|p.Y981Ifs*2|1|0.4|ENSG00000157827|chr2:152637667-152637668|-/A|frameshift_variant;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	400.88800048828125	3	400.191059	1197.55135	0.7921	0.00031699	0.35022	0.00014016	1.1423	0.00045715	400.1913646372645	23.166	0.36703	22.986	22.79	23.157	-0.17989					14	7	3	0	0	0	0.03519	1	859	859		24.232	8.8987	1	75402			82881	18411	57745	57839	91948	91948					-0.03952695186717392
VEELHEAAL	9	Unmodified	_VEELHEAAL_					0	0	0			REV__nc|ENSG00000126012|P41229-2|KDM5C;REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000126012|P41229-2|KDM5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.3089904785156	2	505.761289	1009.50803	0.66517	0.00033641	1.6725	0.00084589	2.3377	0.0011823	505.7633645565566	83.732	0.8082	83.521	83.221	84.029	-0.21159					23	18	2	0	0	0	0.024323	1	10155	10155		44.117	0	1	71801	+		82882	22876;19947	57746	57840	91949	91949					0.0036515982666287528
VEELPVPE	8	Unmodified	_VEELPVPE_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.268798828125	2	456.239658	910.464763	0.12432	5.672E-05	2.0466	0.00093372	2.1709	0.00099044	456.2403355521064	47.68	0.19954	47.527	47.406	47.606	-0.15301					7	5	2	0	0	0	0.027866	1	4783	4783		12.959	0	1	113360	+		82883	37077	57747	57841	91950	91950					0.005949700493943055
VEEMRSTD	8	Unmodified	_VEEMRSTD_					0	0	0			REV__ENSG00000080824|ENST00000216281|HSP90AA1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__DYNC1H1-HSP90AA1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7910461425781	2	483.713482	965.41241	-0.39966	-0.00019332	-2.6819	-0.0012973	-3.0815	-0.0014906	483.7125070694148	46.193	0.27926	46.244	46.096	46.375	0.051399					10	7	2	0	0	0	0.027866	1	4466	4466		37.159	0	1	83111	+		82884	19723;20665	57748	57842	91951	91951					-0.07167936355881466
VEEQASPEY	9	Unmodified	_VEEQASPEY_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2328491210938	2	526.232561	1050.45057	0.020986	1.1044E-05	1.0331	0.00054366	1.0541	0.00055471	526.2329565299273	50.547	0.55961	50.268	49.953	50.513	-0.27977					42	14	4	0	0	0	0.42604	1	5124	5124		64.207	2.0999	1	2429100	+		82885	23505	57749	57843	91952	91952					-0.07263727169561207
VEERKIALY	9	Unmodified	_VEERKIALY_					0	0	0		nc|ENSG00000163539|O75122-3|CLASP2;nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	nc|ENSG00000163539|O75122-3|CLASP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.7777709960938	2	560.821681	1119.62881	-0.36661	-0.0002056	-2.1915	-0.001229	-2.5581	-0.0014346	560.8219584165489	68.531	1.5854	68.531	68.369	69.954	0					62	40	3	0	0	0	0.024506	1	8425	8425		30.504	2.6214	1	815870			82886	18447	57750	57844	91953	91953					0.07377987540144204
VEERNLLSV	9	Unmodified	_VEERNLLSV_					0	0	0		ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000108953|ENST00000264335|YWHAE	ENST00000489287.1_1_17:1268113-1303470:-|nuORF	ENST00000489287.1_1_17:1268113-1303470:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7957153320312	2	529.795663	1057.57677	-1.1714	-0.00062061	0.45436	0.00024072	-0.71706	-0.00037989	529.7958641276311	63.036	1.1882	63.036	62.729	63.917	0					79	31	3	0	0	0	0.31037	2	7337	7337;7349		74.255	2.9593	1	11029000			82887	2951	57751	57845	91954;91955	91954					0.05028824126384279
VEERWWGLFAF	11	Unmodified	_VEERWWGLFAF_					0	0	0		ENST00000469132.1_1_6:32947934-32948492:+|nuORF	ENST00000469132.1_1_6:32947934-32948492:+|nuORF	ENST00000469132.1_1_6:32947934-32948492:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.7627258300781	3	480.575067	1438.70337	0.67545	0.0003246	-2.4605	-0.0011824	-1.785	-0.00085784	480.57387092804	74.797	0.41566	74.614	74.351	74.767	-0.18278					13	9	2	0	0	0	0.024792	1	8784	8784		9.2118	0	1	71225			82888	14898	57752	57846	91956	91956					0.0015675035151616612
VEESAGLVGLK	11	Unmodified	_VEESAGLVGLK_					0	0	0		ENSG00000164898|ENST00000297534|FMC1;ENST00000481123.1_1_7:139025293-139030447:+|nuORF	ENSG00000164898|ENST00000297534|FMC1	ENSG00000164898|ENST00000297534|FMC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.29345703125	2	551.311146	1100.60774	0.87828	0.00048421	-0.57983	-0.00031966	0.29845	0.00016454	551.3112781122965	107.36	0.33499	107.36	107.13	107.47	0					10	7	2	0	0	0	0.024787	1	13773	13773		49.536	20.386	1	54374			82889	7338	57753	57847	91957	91957					0.061459774406330325
VEESAGLVGLK	11	Unmodified	_VEESAGLVGLK_					0	0	0		ENSG00000164898|ENST00000297534|FMC1;ENST00000481123.1_1_7:139025293-139030447:+|nuORF	ENSG00000164898|ENST00000297534|FMC1	ENSG00000164898|ENST00000297534|FMC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.311146	1100.60774	-0.28805	-0.0001588	3.9454	0.0021752	3.6574	0.0020164	551.3140154200706	107.37	0.37688	107.37	107.06	107.44	-0.0034866	0.0036891	0.0038968	NaN	49.536	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124240			82890	7338	57753	57847							0.061459774406330325
VEEVGVFHSA	10	Unmodified	_VEEVGVFHSA_					0	0	0			REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.7814331054688	2	537.266739	1072.51892	-0.91709	-0.00049272	2.2256	0.0011958	1.3085	0.00070304	537.2677474476658	94.618	1.019	94.622	94.207	95.226	0.0041199					36	23	2	0	0	0	0.03519	1	12037	12037		34.173	1.3601	1	393970	+		82891	29043	57754	57848	91958	91958					-0.014434377990255598
VEEVKKVL	8	Unmodified	_VEEVKKVL_					0	0	0			REV__ENST00000459854.5_1_22:19442175-19463025:-|nuORF	REV__ENST00000459854.5_1_22:19442175-19463025:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.295166015625	2	472.294768	942.574983	0.19548	9.2324E-05	-0.30112	-0.00014222	-0.10564	-4.9893E-05	472.29456751299625	34.314	1.6062	34.09	33.803	35.409	-0.22412					97	40	4	0	0	0	0.53523	1	2536	2536		82.305	2.3658	1	14155000	+		82892	32831	57755	57849	91959	91959					0.10139815108436778
VEEVQRIL	8	Unmodified	_VEEVQRIL_					0	0	0			REV__ENSG00000175229|ENST00000312006|GAL3ST3	REV__ENSG00000175229|ENST00000312006|GAL3ST3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.30694580078125	2	493.287474	984.560395	-0.98847	-0.0004876	2.0878	0.0010299	1.0994	0.00054231	493.288504655812	69.589	0.58385	69.321	69.079	69.662	-0.26725					36	13	3	0	0	0	0.027866	1	8091	8091		56.721	1.9447	1	827530	+		82893	26931	57756	57850	91960	91960					0.06749742960300864
VEEVRKQRRLL	11	Unmodified	_VEEVRKQRRLL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.3155822753906	3	475.959803	1424.85758	1.4618	0.00069575	1.7913	0.00085259	3.2531	0.0015483	475.9604830529904	65.762	0.85781	65.762	65.326	66.184	0					53	22	3	0	0	0	0.024873	1	7836	7836		9.6461	1.2389	1	239010			82894	3488	57757	57851	91961	91961					0.16214579836901066
VEEVSSPRG	9	Unmodified	_VEEVSSPRG_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.8000183105469	2	480.243264	958.471974	-0.80947	-0.00038874	0.59806	0.00028721	-0.21141	-0.00010153	480.2431901462865	26.738	0.32445	26.819	26.671	26.996	0.081293					11	7	2	0	0	0	0.022083	1	1363	1363		87.754	13.499	1	73833	+		82895	25031	57758	57852	91962	91962					-0.008922973501739762
VEEVSSPRG	9	Unmodified	_VEEVSSPRG_					0	0	0			REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.8000183105469	2	480.243264	958.471974	-0.57105	-0.00027424	3.6339	0.0017452	3.0629	0.0014709	480.24669188155394	27.12	0.16489	26.952	26.892	27.057	-0.16816					5	3	2	0	0	0	0.022083	1	1468	1468		87.754	31.033	1	14051	+		82896	25031	57758	57852	91963	91963					-0.008922973501739762
VEEVTWFL	8	Unmodified	_VEEVTWFL_					0	0	0		ENST00000433644.2_2_9:98178049-98189049:-|nuORF	ENST00000433644.2_2_9:98178049-98189049:-|nuORF	ENST00000433644.2_2_9:98178049-98189049:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	511.7621765136719	2	511.7633	1021.51205	0.37128	0.00019001	-3.8258	-0.0019579	-3.4545	-0.0017679	511.7613558416419	94.971	1.0715	94.848	94.219	95.291	-0.12251					42	24	2	0	0	0	0.95417	1	11719	11719		44.531	2.0566	1	202270			82897	14231	57759	57853	91964	91964					0.0021524932037664257
VEEYLIRLTK	10	Unmodified	_VEEYLIRLTK_					0	0	0			REV__nc|ENSG00000142002|Q86TI2|DPP9	REV__nc|ENSG00000142002|Q86TI2|DPP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	421.9166259765625	3	421.915089	1262.72344	0.98351	0.00041496	3.0782	0.0012987	4.0617	0.0017137	421.91623567655034	19.2	0.76648	19.2	18.922	19.689	0					42	15	4	0	0	0	1.1314	1	372	372		27.047	4.4677	1	454120	+		82898	24130	57760	57854	91965	91965					0.1025850129144601
VEEYLIRLTK	10	Unmodified	_VEEYLIRLTK_					0	0	0			REV__nc|ENSG00000142002|Q86TI2|DPP9	REV__nc|ENSG00000142002|Q86TI2|DPP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	421.9166564941406	3	421.915089	1262.72344	2.812	0.0011864	1.0575	0.00044619	3.8696	0.0016326	421.915427910184	19.396	0.87496	19.462	19.143	20.018	0.066195					45	17	4	0	0	0	1.1314	1	370	370		27.047	1.9213	1	315030	+		82899	24130	57760	57854	91966	91966					0.1025850129144601
VEFFFVTQ	8	Unmodified	_VEFFFVTQ_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2931213378906	2	508.758018	1015.50148	0.41016	0.00020867	-0.30581	-0.00015558	0.10435	5.3087E-05	508.7578715940672	50.926	0.78674	50.815	50.303	51.09	-0.11163					39	20	2	0	0	0	0.027866	1	5177	5177		23.042	0	1	467920	+		82900	28709	57761	57855	91967	91967					-0.005647333340334626
VEFLYDQF	8	Unmodified	_VEFLYDQF_					0	0	0			REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	REV__MIS12|p.I147Nfs*14|1|0.25|ENSG00000167842|chr17:5489295-5489296|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.7854614257812	2	530.752933	1059.49131	0.24331	0.00012914	0.098097	5.2065E-05	0.34141	0.0001812	530.7524807972487	43.167	0.54693	43.198	42.939	43.486	0.030823					29	14	3	0	0	0	0.027866	1	3958	3958		55.504	2.1528	1	350500	+		82901	26197	57762	57856	91968	91968					-0.03605341059278544
VEFRQPGG	8	Unmodified	_VEFRQPGG_					0	0	0			REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.76116943359375	2	445.229959	888.445365	-0.18941	-8.4329E-05	-3.8915	-0.0017326	-4.0809	-0.001817	445.22803168984143	24.285	0.8548	24.11	23.699	24.554	-0.17484					30	19	2	0	0	0	0.027866	1	993	993		97.473	28.988	1	182600	+		82902	21690	57763	57857	91969	91969					-0.0033194145084962656
VEFRQPGG	8	Unmodified	_VEFRQPGG_					0	0	0			REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	REV__ENST00000477979.5_1_10:102823983-102824674:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.76116943359375	2	445.229959	888.445365	-0.31856	-0.00014183	-3.8609	-0.001719	-4.1795	-0.0018608	445.2280885091114	23.637	0.94413	23.457	22.836	23.78	-0.17989					33	21	2	0	0	0	0.027866	1	993	993		97.473	28.988	1	215060	+		82903	21690	57763	57857	91970	91970					-0.0033194145084962656
VEFSGRRPK	9	Unmodified	_VEFSGRRPK_					0	0	0			REV__ENST00000533321.1_1_11:57509317-57509464:+|nuORF	REV__ENST00000533321.1_1_11:57509317-57509464:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.3233642578125	2	538.30399	1074.59343	-0.8054	-0.00043355	2.4665	0.0013277	1.6611	0.00089419	538.3044761444075	81.735	0.64368	81.604	81.217	81.86	-0.13075					22	15	2	0	0	0	0.024436	1	10141	10141		30.504	3.8107	1	130020	+		82904	28715	57764	57858	91971	91971					0.05911369802993249
VEFTHQDII	9	Unmodified	_VEFTHQDII_					0	0	0			REV__ENSG00000167986|ENST00000301764|DDB1	REV__ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.302978515625	2	551.282389	1100.55022	-0.82468	-0.00045463	-1.3976	-0.00077046	-2.2222	-0.0012251	551.2814504827688	33.611	0.41695	33.618	33.423	33.84	0.0066261					12	10	2	0	0	0	0.024405	1	2404	2404		44.117	3.3386	1	44979	+		82905	26208	57765	57859	91972	91972					0.003971352350617963
VEFTVGDKP	9	Unmodified	_VEFTVGDKP_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B;nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000109103|ENST00000335765|UNC119	ENSG00000175970|ENST00000344651|UNC119B;nc|ENSG00000109103|Q13432-2|UNC119	nc|ENSG00000109103|Q13432-2|UNC119	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.29248046875	2	496.258382	990.502212	0.40374	0.00020036	-1.7314	-0.0008592	-1.3276	-0.00065884	496.25765355019394	68.159	0.47922	67.926	67.756	68.236	-0.23376					14	11	2	0	0	0	0.024457	1	7899	7899		37.159	0	1	85983			82906	8602;2962	57766	57860	91973	91973					0.00658061315004943
VEFVRLPVP	9	Unmodified	_VEFVRLPVP_					0	0	0			REV__ENST00000396185.7_1_3:41241009-41266025:+|nuORF	REV__ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.3289184570312	2	528.316035	1054.61752	-0.35619	-0.00018818	3.0008	0.0015854	2.6446	0.0013972	528.3173891636908	77.994	1.2448	78.01	77.863	79.107	0.015907					53	29	3	0	0	0	0.024397	1	9559	9559		47.657	10.498	1	762230	+		82907	31724	57767	57861	91974	91974					0.09239210236682993
VEFVYAICL	9	Unmodified	_VEFVYAICL_					0	0	0			REV__nc|ENSG00000197905|Q15561-2|TEAD4	REV__nc|ENSG00000197905|Q15561-2|TEAD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2465209960938	2	528.775354	1055.53615	0.13857	7.3272E-05	3.1694	0.0016759	3.3079	0.0017492	528.7766179436792	59.306	0.48472	59.124	58.831	59.316	-0.18133					16	11	2	0	0	0	0.024386	1	6515	6515		25.45	0	1	189250	+		82908	28362	57768	57862	91975	91975					0.01060766482373765
VEGAAPCQTPS	11	Unmodified	_VEGAAPCQTPS_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.300537109375	2	530.242406	1058.47026	-0.43349	-0.00022986	-0.78071	-0.00041397	-1.2142	-0.00064382	530.2416987039006	54.449	0.19748	54.204	54.103	54.301	-0.2453					7	5	2	0	0	0	0.024736	1	5795	5795		44.377	16.495	1	127820	+		82909	36984	57769	57863	91976	91976					-0.05663674430456922
VEGISNPLI	9	Unmodified	_VEGISNPLI_					0	0	0			REV__ENST00000411573.6_1_17:45977579-45977684:-|nuORF	REV__ENST00000411573.6_1_17:45977579-45977684:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2689208984375	2	471.26875	940.522947	0.27441	0.00012932	0.00088899	4.1895E-07	0.2753	0.00012974	471.26860627698454	78.303	1.0331	78.303	77.959	78.993	0					45	24	3	0	0	0	0.70156	1	9708	9708		45.972	0.020292	1	2363600	+		82910	31984	57770	57864	91977	91977					0.0503065169467618
VEGKNFIILT	10	Unmodified	_VEGKNFIILT_					0	0	0		SLC25A44|p.S257F|1|0.36|ENSG00000160785|chr1:156210256-156210256|C/T|missense_variant	SLC25A44|p.S257F|1|0.36|ENSG00000160785|chr1:156210256-156210256|C/T|missense_variant	SLC25A44|p.S257F|1|0.36|ENSG00000160785|chr1:156210256-156210256|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7689819335938	2	567.331882	1132.64921	-1.5301	-0.00086808	0.50206	0.00028483	-1.028	-0.00058325	567.3326556681145	83.269	1.2454	83.295	82.874	84.119	0.026558					46	28	2	0	0	0	0.03519	1	10415	10415		52.937	5.2794	1	92032			82911	37880	57771	57865	91978	91978					0.0881915819995811
VEGKNFIILT	10	Unmodified	_VEGKNFIILT_					0	0	0		SLC25A44|p.S257F|1|0.36|ENSG00000160785|chr1:156210256-156210256|C/T|missense_variant	SLC25A44|p.S257F|1|0.36|ENSG00000160785|chr1:156210256-156210256|C/T|missense_variant	SLC25A44|p.S257F|1|0.36|ENSG00000160785|chr1:156210256-156210256|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	567.331882	1132.64921	0.076952	4.3658E-05	-0.49644	-0.00028164	-0.41948	-0.00023799	567.3317732282832	83.405	0.72437	83.314	82.958	83.682	-0.090454	-0.011283	-0.00096918	NaN	36.447	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89680			82912	37880	57771	57865							0.0881915819995811
VEGKNKTVS	9	Unmodified	_VEGKNKTVS_					0	0	0		nc|ENSG00000037280|P35916-3|FLT4;FLT4|p.E1138Gfs*76|1|0.2|ENSG00000037280|chr5:180613031-180613032|-/G|frameshift_variant;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;ENST00000507059.5_1_5:180043993-180056331:-|nuORF	nc|ENSG00000037280|P35916-3|FLT4	nc|ENSG00000037280|P35916-3|FLT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.75335693359375	2	481.269281	960.52401	-0.17085	-8.2224E-05	-1.8436	-0.00088726	-2.0144	-0.00096949	481.26930691935826	48.291	0.54185	48.291	47.906	48.448	0					22	15	2	0	0	0	0.024447	1	4870	4870		32.812	0	1	187570			82913	1045	57772	57866	91979	91979					0.042168660635638844
VEGLIKPL	8	Unmodified	_VEGLIKPL_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.252197265625	2	434.778754	867.542954	0.021685	9.4284E-06	0.70868	0.00030812	0.73036	0.00031755	434.77908534347364	79.254	0.66588	79.254	78.993	79.658	0					21	15	2	0	0	0	0.027866	1	9814	9814		23.042	0	1	94189	+		82914	23118	57773	57867	91980	91980					0.10388447425270897
VEGLPLLGLA	10	Unmodified	_VEGLPLLGLA_					0	0	0			REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	REV__nc|ENSG00000183629|P0DX53-4|GOLGA8G	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.3023986816406	2	491.302593	980.590633	-0.05885	-2.8913E-05	0.080629	3.9613E-05	0.021778	1.07E-05	491.3025230644942	95.459	0.89596	95.459	95.179	96.075	0					62	20	4	0	0	0	1.0665	1	12166	12166		37.159	1.5408	1	1437100	+		82915	37005	57774	57868	91981	91981					0.09956101625459723
VEGLVILGK	9	Unmodified	_VEGLVILGK_					0	0	0			REV__ENSG00000120071|ENST00000432791|KANSL1	REV__ENSG00000120071|ENST00000432791|KANSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.27874755859375	2	464.29731	926.580068	-0.048464	-2.2502E-05	0.061081	2.836E-05	0.012618	5.8585E-06	464.2971388794038	81.288	0.69107	81.312	81.046	81.737	0.023911					36	16	3	0	0	0	0.023817	1	10032	10032		71.296	32.49	1	472080	+		82916	22512	57775	57869	91982	91982					0.11384118971056978
VEGNVKQP	8	Unmodified	_VEGNVKQP_					0	0	0			REV__ENSG00000079819|ENST00000337057|EPB41L2	REV__ENSG00000079819|ENST00000337057|EPB41L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.7439880371094	2	435.737617	869.460681	0.6131	0.00026715	0.48057	0.0002094	1.0937	0.00047655	435.7376949234942	33.459	0.54521	33.516	33.386	33.931	0.056572					37	13	4	0	0	0	0.027866	1	2348	2348		23.042	0	1	1308200	+		82917	20643	57776	57870	91983	91983					0.020729253463287023
VEGPEPMC	8	Unmodified	_VEGPEPMC_					0	0	0		ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	431.1785583496094	2	431.177689	860.340825	0.62457	0.0002693	-0.0061023	-2.6312E-06	0.61847	0.00026667	431.17806128843546	22.761	0.51189	22.572	22.327	22.839	-0.18894					27	10	4	0	0	0	1.0017	1	848	848		37.028	8.7742	1	227540			82918	7619	57777	57871	91984	91984					-0.09493147314105954
VEGPEPMC	8	Unmodified	_VEGPEPMC_					0	0	0		ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	431.177689	860.340825	-0.22262	-9.5988E-05	1.8084	0.00077975	1.5858	0.00068376	431.17829252170435	22.919	0.3693	22.734	22.554	22.923	-0.18539	0.080585	0.00080156	NaN	37.028	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28655			82919	7619	57777	57871							-0.09493147314105954
VEGRPKRL	8	Unmodified	_VEGRPKRL_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7972412109375	2	477.795801	953.577048	0.40374	0.0001929	2.4895	0.0011895	2.8932	0.0013824	477.7969033037499	96.363	2.7985	96.363	95.476	98.275	0					152	64	4	0	0	0	0.94517	1	12302	12302		45.952	1.8352	1	7655300	+		82920	27536	57778	57872	91985	91985					0.09840288636894456
VEGRVLRVL	9	Unmodified	_VEGRVLRVL_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.766357421875	2	520.832383	1039.65021	0.014632	7.6209E-06	-0.91027	-0.0004741	-0.89563	-0.00046647	520.831323100342	47.853	0.32465	47.577	47.305	47.63	-0.27598					9	8	2	0	0	0	0.024323	1	4656	4656		44.117	3.5442	1	114870	+		82921	26688	57779	57873	91986	91986					0.13197417359515384
VEGTEKQSHS	10	Unmodified	_VEGTEKQSHS_					0	0	0		nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF	nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1|PCDH15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2577514648438	2	551.262185	1100.50982	0.15162	8.3582E-05	2.8687	0.0015814	3.0203	0.001665	551.2638946432583	21.184	0.52931	21.007	20.726	21.256	-0.17721					13	10	2	0	0	0	0.03519	1	608	608		27.882	12.24	1	25608			82922	18380	57780	57874	91987	91987					-0.03641831155368891
VEGVFKILL	9	Unmodified	_VEGVFKILL_					0	0	0		ENST00000426431.2_1_12:53805763-53805964:+|nuORF	ENST00000426431.2_1_12:53805763-53805964:+|nuORF	ENST00000426431.2_1_12:53805763-53805964:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3221740722656	2	509.320786	1016.62702	0.03139	1.5988E-05	-0.1555	-7.9198E-05	-0.12411	-6.3211E-05	509.3206392516868	107.05	0.61258	107.05	106.83	107.44	-0.003479					31	19	2	0	0	0	0.50848	1	13719	13719		58.782	5.4305	1	247190			82923	14085	57781	57875	91988	91988					0.11936978522192021
VEGVLVNSA	9	Unmodified	_VEGVLVNSA_					0	0	0			REV__ENSG00000050438|ENST00000453097|SLC4A8;REV__nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;REV__nc|ENSG00000188687|Q9BY07-6|SLC4A5;REV__nc|ENSG00000033867|Q9Y6M7-10|SLC4A7	REV__ENSG00000050438|ENST00000453097|SLC4A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	444.2453918457031	2	444.245275	886.475997	0.15763	7.0029E-05	0.53755	0.0002388	0.69518	0.00030883	444.24545220635093	102.77	1.0672	102.77	102.5	103.57	0.0054169					45	25	2	0	0	0	0.77768	1	13156	13156		40.778	3.6191	1	7580800	+		82924	20160;20654;28053;36444	57782	57876	91989	91989					0.02821792143527091
VEHEQQVTESP	11	Unmodified	_VEHEQQVTESP_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.19012451171875	3	428.201846	1281.58371	-0.16399	-7.0223E-05	2.5588	0.0010957	2.3949	0.0010255	428.53838261981997	25.268	0.21802	25.041	24.887	25.105	-0.22683					7	4	2	0	0	0	0.02473	1	1182	1182		21.032	0	1	21459			82925	4940	57783	57877	91990	91990					-0.045819077836767974
VEHRKVSCS	9	Unmodified	_VEHRKVSCS_					0	0	0			REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	REV__nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7647705078125	2	522.766383	1043.51821	-0.55449	-0.00028987	-3.0502	-0.0015945	-3.6047	-0.0018844	522.7646778054808	35.848	1.0717	35.892	35.343	36.415	0.04406					75	28	3	0	0	0	0.35646	2	2749	2725;2749		68.787	15.435	1	5251300	+		82926	22505	57784	57878	91991;91992	91992					-0.0018055571974855411
VEHTGRSL	8	Unmodified	_VEHTGRSL_					0	0	0			REV__NID2|p.Y463H|1|0.25|ENSG00000087303|chr14:52053621-52053621|A/G|missense_variant	REV__NID2|p.Y463H|1|0.25|ENSG00000087303|chr14:52053621-52053621|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	449.74072265625	2	449.740691	897.466829	-0.88526	-0.00039814	0.97463	0.00043833	0.089377	4.0196E-05	449.74102511164796	30.615	0.7449	30.615	30.258	31.003	0					34	17	3	0	0	0	0.56592	1	1970	1970		79.451	0	1	1712300	+		82927	37280	57785	57879	91993	91993					0.013994435778499792
VEHTGRSL	8	Unmodified	_VEHTGRSL_					0	0	0			REV__NID2|p.Y463H|1|0.25|ENSG00000087303|chr14:52053621-52053621|A/G|missense_variant	REV__NID2|p.Y463H|1|0.25|ENSG00000087303|chr14:52053621-52053621|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	449.7407531738281	2	449.740691	897.466829	-0.27002	-0.00012144	0.39576	0.00017799	0.12575	5.6553E-05	449.7407696479239	30.594	1.1138	30.603	29.797	30.911	0.0086708					37	26	2	0	0	0	0.6536	1	1949	1949		71.296	2.5089	1	1738200	+		82928	37280	57785	57879	91994	91994					0.013994435778499792
VEHYRLTK	8	Unmodified	_VEHYRLTK_					0	0	0		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7645263671875	2	523.293091	1044.57163	-1.3017	-0.00068116	3.7176	0.0019454	2.416	0.0012643	523.2947059875388	35.796	0.475	35.753	35.488	35.963	-0.042458					29	12	3	0	0	0	0.027866	1	2757	2757		71.296	13.484	1	515690			82929	6179	57786	57880	91995	91995					0.05112565054400875
VEIAKNIIL	9	Unmodified	_VEIAKNIIL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.76800537109375	2	506.823692	1011.63283	-1.6662	-0.00084445	1.3725	0.0006956	-0.29369	-0.00014885	506.82407902075926	60.142	0.78567	60.221	59.936	60.722	0.078888					43	20	4	0	0	0	0.024344	1	6897	6897		45.972	22.93	1	2684600			82930	4481	57787	57881	91996	91996					0.12748077033870686
VEIAKNIIL	9	Unmodified	_VEIAKNIIL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	506.823692	1011.63283	-0.81002	-0.00041054	0.89079	0.00045147	0.080773	4.0937E-05	506.8240199283193	60.391	0.7917	60.215	59.922	60.714	-0.1761	-0.038746	0.00027122	NaN	45.972	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2464900			82931	4481	57787	57881							0.12748077033870686
VEIAKNIIL	9	Unmodified	_VEIAKNIIL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	506.823692	1011.63283	-0.73543	-0.00037273	0.71123	0.00036047	-0.024198	-1.2264E-05	506.8239055099606	60.55	0.83784	60.296	60.014	60.852	-0.25374	0.042362	8.9203E-05	NaN	45.972	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1803900			82932	4481	57787	57881							0.12748077033870686
VEIDPDFLE	9	Unmodified	_VEIDPDFLE_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.8025512695312	2	538.760955	1075.50736	-0.40497	-0.00021818	3.489	0.0018798	3.0841	0.0016616	538.7630656591612	93.925	0.23761	93.925	93.77	94.007	0					9	5	2	0	0	0	0.024205	1	11942	11942		53.351	0	1	45264	+		82933	24799	57788	57882	91997	91997					-0.027376796130283765
VEIENELNI	9	Unmodified	_VEIENELNI_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.329345703125	2	536.779679	1071.5448	0.35909	0.00019275	3.4232	0.0018375	3.7823	0.0020302	536.7814770455461	19.394	0.74451	19.194	18.908	19.653	-0.2001					17	14	2	0	0	0	0.024025	1	381	381		82.241	0	1	41114			82934	2699	57789	57883	91998	91998					0.011894116525809295
VEIKSKKDP	9	Unmodified	_VEIKSKKDP_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7587280273438	2	522.308406	1042.60226	-0.39503	-0.00020633	0.98058	0.00051216	0.58554	0.00030583	522.3083114196552	41.512	0.56901	41.376	41.06	41.629	-0.13553					40	14	5	0	0	0	0.024344	1	3635	3635		30.318	0	1	537210	+		82935	22407	57790	57884	91999	91999					0.0826629864880033
VEILDVGY	8	Unmodified	_VEILDVGY_					0	0	0			REV__ENSG00000122512|ENST00000265849|PMS2;REV__nc|ENSG00000078319|A4D2B8-3|PMS2P1;REV__nc|ENSG00000291092|Q13401|PMS2P3	REV__ENSG00000122512|ENST00000265849|PMS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	453.34375	2	454.242201	906.469849	0.1139	5.1737E-05	2.3187	0.0010532	2.4326	0.001105	454.24335174146586	100.61	0.17436	100.44	100.28	100.46	-0.17088					5	3	2	0	0	0	0.027866	1	12462	12462		54.765	29.315	1	37371	+		82936	22649;36479;32127	57791	57885	92000	92000					0.012872739119984544
VEILEQISV	9	Unmodified	_VEILEQISV_					0	0	0			REV__ENST00000532469.1_1_11:65029724-65047127:+|nuORF	REV__ENST00000532469.1_1_11:65029724-65047127:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2952270507812	2	515.294965	1028.57538	-0.2986	-0.00015387	0.98839	0.00050931	0.68979	0.00035544	515.2956771851015	73.628	0.66979	73.363	73.017	73.687	-0.26479					57	16	4	0	0	0	0.18994	1	8646	8646		90.601	5.44	1	14291000	+		82937	19964	57792	57886	92001	92001					0.062231900375991245
VEIMATELL	9	Unmodified	_VEIMATELL_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.8028564453125	2	509.778093	1017.54163	0.54122	0.0002759	-3.4777	-0.0017729	-2.9365	-0.001497	509.77599377235276	82.633	0.73807	82.413	82.086	82.824	-0.22015					25	16	2	0	0	0	0.024457	1	10001	10001		37.159	5.6293	1	332810			82938	1708	57793	57887	92002	92002					0.033564452741984496
VEIPCPPAVS	10	Carbamidomethyl (C)	_VEIPC(Carbamidomethyl (C))PPAVS_	VEIPC(1)PPAVS		VEIPC(82)PPAVS		0	1	0		nc|ENSG00000078018|P11137-3|MAP2;ENSG00000078018|ENST00000682079|MAP2	nc|ENSG00000078018|P11137-3|MAP2	nc|ENSG00000078018|P11137-3|MAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.7715454101562	2	534.773342	1067.53213	-0.19001	-0.00010161	-3.026	-0.0016182	-3.216	-0.0017199	534.7715322128588	55.115	0.63984	54.909	54.538	55.177	-0.20613					51	17	4	0	0	0	0.55353	1	5881	5881		82.241	10.363	1	3470800			82939	1623	57794	57888	92003	92003	22				0.0010667698868473963
VEIQFTTY	8	Unmodified	_VEIQFTTY_					0	0	0			REV__ENSG00000183914|ENST00000572933|DNAH2	REV__ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.75433349609375	2	500.752933	999.491313	-0.67099	-0.000336	0.56372	0.00028228	-0.10728	-5.3719E-05	500.75312562117807	69.366	1.044	69.099	68.66	69.704	-0.26725					73	24	4	0	0	0	0.56592	1	8022	8022		79.451	2.6044	1	5494400	+		82940	27624	57795	57889	92004	92004					-0.008453410592892396
VEIRSVQPQF	10	Unmodified	_VEIRSVQPQF_					0	0	0			REV__ENST00000534788.1_1_11:118795899-118828340:+|nuORF	REV__ENST00000534788.1_1_11:118795899-118828340:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.55706787109375	3	401.555784	1201.64552	1.2158	0.00048822	2.439	0.00097938	3.6548	0.0014676	401.5566326583334	72.614	0.80853	72.349	72.001	72.81	-0.26479					49	18	4	0	0	0	1.0814	1	8534	8534		35.178	1.2566	1	812220	+		82941	34654	57796	57890	92005	92005					0.05276488426079595
VEISSVMVLY	10	Unmodified	_VEISSVMVLY_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.3040771484375	2	570.304475	1138.5944	0.7405	0.00042231	-3.4931	-0.0019921	-2.7526	-0.0015698	570.3023893112485	99.188	1.6807	99.053	98.191	99.871	-0.13526					119	40	4	0	0	0	0.75995	1	12256	12256		63.306	17.334	1	1167300			82942	18521	57797	57891	92006	92006					0.03064403337020849
VEIVDDDKD	9	Unmodified	_VEIVDDDKD_					0	0	0			REV__ENSG00000164080|ENST00000684192|RAD54L2	REV__ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8365478515625	2	524.245669	1046.47678	-0.83547	-0.00043799	1.9979	0.0010474	1.1624	0.00060939	524.2464305005496	60.878	0.5663	60.665	60.384	60.95	-0.21339					18	14	2	0	0	0	0.017891	1	7002	7002		108.09	25.847	1	133940	+		82943	25688	57798	57892	92007	92007					-0.044594579981094284
VEIVDDDKD	9	Unmodified	_VEIVDDDKD_					0	0	0			REV__ENSG00000164080|ENST00000684192|RAD54L2	REV__ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.8384399414062	2	524.245669	1046.47678	-1.5843	-0.00083054	1.9581	0.0010265	0.37385	0.00019599	524.2468803194569	60.483	0.48646	60.562	60.392	60.879	0.078888					20	12	2	0	0	0	0.023837	1	6911	6911		74.255	19.479	1	100800	+		82944	25688	57798	57892	92008	92008					-0.044594579981094284
VEIVGIPDK	9	Unmodified	_VEIVGIPDK_					0	0	0		ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.2844	968.554247	-0.67147	-0.00032585	4.2507	0.0020628	3.5792	0.0017369	485.28617288720517	44.052	1.0497	44.089	43.528	44.578	0.0369					35	29	2	0	0	0	0.024209	1	4127	4127		56.721	0	1	1665500			82945	801	57799	57893	92009	92009					0.06871224728763536
VEIVRSGI	8	Unmodified	_VEIVRSGI_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.7637023925781	2	436.763635	871.512717	-0.043406	-1.8958E-05	0.22025	9.6199E-05	0.17685	7.7241E-05	436.76361114986486	26.98	1.0193	26.823	26.586	27.605	-0.15664					55	23	4	0	0	0	0.50239	1	1438	1438		85.359	3.0545	1	2220400			82946	8382	57800	57894	92010	92010					0.071820887600893
VEIVVWFKI	9	Unmodified	_VEIVVWFKI_					0	0	0		ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3132934570312	2	566.841885	1131.66922	-0.030169	-1.7101E-05	-3.8148	-0.0021624	-3.845	-0.0021795	566.8397606868909	67.555	0.50255	67.321	67.093	67.595	-0.23376					26	11	3	0	0	0	0.024405	1	7801	7801		27.882	0	1	348950			82947	15215	57801	57895	92011	92011					0.1086495393055884
VEIVVWFKI	9	Unmodified	_VEIVVWFKI_					0	0	0		ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	566.841885	1131.66922	-0.65457	-0.00037104	-4.1845	-0.002372	-4.8391	-0.002743	566.8393637517887	67.272	0.5952	67.272	67.049	67.644	0	-0.055462	5.6335E-05	NaN	34.173	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	924450			82948	15215	57801	57895							0.1086495393055884
VEIVVWFKI	9	Unmodified	_VEIVVWFKI_					0	0	0		ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.841885	1131.66922	-0.28507	-0.00016159	-4.5793	-0.0025957	-4.8644	-0.0027573	566.8391948174148	67.653	0.56329	67.365	67.108	67.671	-0.28835	0.037212	-0.00039119	NaN	34.173	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037800			82949	15215	57801	57895							0.1086495393055884
VEIVVWFKI	9	Unmodified	_VEIVVWFKI_					0	0	0		ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	ENST00000480884.5_1_3:56649942-56650128:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	566.841885	1131.66922	-0.69213	-0.00039233	-4.7501	-0.0026926	-5.4422	-0.0030849	566.8389572094148	67.381	0.59587	67.405	67.152	67.748	0.023911	0.076925	-0.00058484	NaN	34.173	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722330			82950	15215	57801	57895							0.1086495393055884
VEKDNVKVL	9	Unmodified	_VEKDNVKVL_					0	0	0			REV__ENSG00000186716|ENST00000305877|BCR	REV__ENSG00000186716|ENST00000305877|BCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7586059570312	2	522.308406	1042.60226	-0.1913	-9.9915E-05	0.13711	7.1614E-05	-0.054185	-2.8301E-05	522.3079676012306	41.674	0.5402	41.446	41.159	41.699	-0.2278					40	13	4	0	0	0	0.024344	1	3652	3652		45.972	0	1	550870	+		82951	27880	57802	57896	92012	92012					0.08266298648823067
VEKEKLPP	8	Unmodified	_VEKEKLPP_					0	0	0			REV__ENSG00000170653|ENST00000420353|ATF7	REV__ENSG00000170653|ENST00000420353|ATF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.2801208496094	2	470.279118	938.543683	-0.62422	-0.00029356	1.4582	0.00068578	0.83403	0.00039222	470.27965427441234	75.498	1.2418	75.498	75.232	76.473	0					75	32	3	0	0	0	0.32162	1	9271	9271		108.09	14.081	1	3098300	+		82952	26492	57803	57897	92013	92013					0.07195242074340058
VEKFGKEW	8	Unmodified	_VEKFGKEW_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7328491210938	2	511.768917	1021.52328	0.47461	0.00024289	0.19053	9.751E-05	0.66514	0.0003404	511.76883075784673	59.551	0.50829	59.375	59.158	59.667	-0.1761					19	12	2	0	0	0	0.027866	1	6558	6558		24.203	0	1	314350			82953	2693	57804	57898	92014	92014					0.013380714145228012
VEKFNLDIS	9	Unmodified	_VEKFNLDIS_					0	0	0		nc|ENSG00000186976|Q5THR3-2|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-4|EFCAB6;nc|ENSG00000186976|Q5THR3-3|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-2|EFCAB6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2256469726562	2	532.784764	1063.55498	-0.35694	-0.00019017	-2.1605	-0.0011511	-2.5174	-0.0013413	532.7847434101595	27.594	0.56204	27.351	27.076	27.638	-0.24217					23	12	3	0	0	0	0.024367	1	1564	1564		44.377	0	1	168470			82954	9598	57805	57899	92015	92015					0.025740193778119647
VEKFPIRIT	9	Unmodified	_VEKFPIRIT_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2401123046875	2	551.834591	1101.65463	0.10884	6.0062E-05	-0.46353	-0.00025579	-0.35469	-0.00019573	551.8341827669249	83.245	0.34128	83.154	83.043	83.385	-0.090454					10	7	2	0	0	0	0.024477	1	10373	10373		35.618	5.1146	1	38325	+		82955	23384	57806	57900	92016	92016					0.10786881782405544
VEKFPNYSN	9	Unmodified	_VEKFPNYSN_					0	0	0			REV__EHBP1-MDH1|3|fusion	REV__EHBP1-MDH1|3|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2877197265625	2	549.266739	1096.51892	0.022034	1.2103E-05	-1.2016	-0.00066001	-1.1796	-0.0006479	549.7679225752493	47.738	0.36033	47.551	47.389	47.749	-0.18684					13	9	2	0	0	0	0.024511	1	4691	4691		19.104	1.6355	1	140910	+		82956	19734	57807	57901	92017	92017					-0.025474377990576613
VEKGFYNC	8	Unmodified	_VEKGFYNC_					0	0	0		ENST00000373840.8_1_9:123943038-123943272:-|nuORF	ENST00000373840.8_1_9:123943038-123943272:-|nuORF	ENST00000373840.8_1_9:123943038-123943272:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2897644042969	2	480.218203	958.421853	0.40964	0.00019672	2.7888	0.0013392	3.1985	0.001536	480.21944154241703	49.536	2.4079	49.536	48.037	50.445	0					92	68	2	0	0	0	0.027866	1	5019	5019		30.504	9.5567	1	189510			82957	13094	57808	57902	92018	92018					-0.059021232797022094
VEKGKAAGLL	10	Unmodified	_VEKGKAAGLL_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.79730224609375	2	493.305667	984.596781	-0.78754	-0.0003885	0.60337	0.00029764	-0.18417	-9.0853E-05	493.3059751286045	61.352	0.70483	61.176	60.833	61.538	-0.1761					35	16	3	0	0	0	0.03519	1	6827	6827		32.812	6.1195	1	834770	+		82958	27906	57809	57903	92019	92019					0.10386619857001733
VEKGLPMW	8	Unmodified	_VEKGLPMW_					0	0	0			REV__ENST00000474370.1_1_7:33138787-33148984:-|nuORF	REV__ENST00000474370.1_1_7:33138787-33148984:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2897644042969	2	480.254588	958.494624	0.20504	9.8472E-05	0.96427	0.00046309	1.1693	0.00056157	480.25599664844987	48.724	0.5898	48.724	48.551	49.141	0					22	16	2	0	0	0	0.027866	1	5019	5019		30.504	0	1	140500	+		82959	25777	57810	57904	92020	92020					0.013716305137336349
VEKKKEEV	8	Unmodified	_VEKKKEEV_					0	0	0			REV__ENSG00000147604|ENST00000352983|RPL7	REV__ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7869567871094	2	494.787307	987.560061	0.020928	1.0355E-05	-0.59709	-0.00029543	-0.57617	-0.00028508	494.78703127438985	19.419	0.9779	19.258	18.984	19.962	-0.16079					59	19	5	0	0	0	0.34573	2	424	424;436		104.75	6.2317	1	4279000	+		82960	24570	57811	57905	92021;92022	92021					0.06578323240432837
VEKKKEEV	8	Unmodified	_VEKKKEEV_					0	0	0			REV__ENSG00000147604|ENST00000352983|RPL7	REV__ENSG00000147604|ENST00000352983|RPL7	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	494.787307	987.560061	0.86651	0.00042874	-0.4077	-0.00020173	0.45881	0.00022701	494.78678261273404	19.53	0.78685	19.33	19.156	19.943	-0.2001	0.03395	0.00024093	NaN	104.75	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183980	+		82961	24570	57811	57905							0.06578323240432837
VEKKKEEV	8	Unmodified	_VEKKKEEV_					0	0	0			REV__ENSG00000147604|ENST00000352983|RPL7	REV__ENSG00000147604|ENST00000352983|RPL7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.787307	987.560061	1.3895	0.00068751	-2.2009	-0.001089	-0.81141	-0.00040147	494.7864608232076	19.533	0.24793	19.3	19.176	19.424	-0.23345	0.004169	-0.0015336	NaN	104.75	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18375	+		82962	24570	57811	57905							0.06578323240432837
VEKKKKPS	8	Unmodified	_VEKKKKPS_					0	0	0		nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.3001708984375	2	472.300384	942.586216	0.1909	9.016E-05	-0.68597	-0.00032398	-0.49507	-0.00023382	472.3000857074888	20.146	1.1134	19.979	19.718	20.832	-0.16774					67	22	7	0	0	0	0.38451	2	505	505;515		99.375	22.528	1	3651400			82963	7394	57812	57906	92023;92024	92023					0.11262637202571568
VEKKKKPS	8	Unmodified	_VEKKKKPS_					0	0	0		nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.3002624511719	2	472.300384	942.586216	1.1537	0.0005449	-1.6097	-0.00076026	-0.45599	-0.00021536	472.29961352116766	20.212	1.1715	20.016	19.706	20.877	-0.19577					57	23	4	0	0	0	0.53523	1	503	503		82.305	8.3303	1	3234100			82964	7394	57812	57906	92025	92025					0.11262637202571568
VEKKKKPS	8	Unmodified	_VEKKKKPS_					0	0	0		nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.3000793457031	2	472.300384	942.586216	0.086269	4.0745E-05	0.85799	0.00040523	0.94426	0.00044598	472.3002368661611	20.268	0.73473	20.045	19.68	20.415	-0.22344					51	14	7	0	0	0	0.89627	1	499	499		51.335	10.557	1	468440			82965	7394	57812	57906	92026	92026					0.11262637202571568
VEKKQLRA	8	Unmodified	_VEKKQLRA_					0	0	0			REV__nc|ENSG00000104221|Q9HAW0-2|BRF2	REV__nc|ENSG00000104221|Q9HAW0-2|BRF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3028259277344	2	486.303458	970.592364	0.29385	0.0001429	-0.99079	-0.00048183	-0.69695	-0.00033893	486.3029765935442	47.556	1.5497	47.369	46.966	48.516	-0.18684					93	41	5	0	0	0	1.0009	1	4641	4641		37.159	0	1	15120000	+		82966	21426	57813	57907	92027	92027					0.10589155434081476
VEKLSLHIT	9	Unmodified	_VEKLSLHIT_					0	0	0			REV__ENST00000586194.1_1_19:56204029-56204606:+|nuORF	REV__ENST00000586194.1_1_19:56204029-56204606:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.357421875	2	520.310949	1038.60735	0.40498	0.00021072	3.5988	0.0018725	4.0038	0.0020832	520.3127695602424	82.508	0.90878	82.327	82.027	82.936	-0.18079					37	20	3	0	0	0	0.024319	1	9913	9913		39.253	5.0803	1	495470	+		82967	35591	57814	57908	92028	92028					0.08958602511415847
VEKNKEKN	8	Unmodified	_VEKNKEKN_					0	0	0			REV__ENST00000503104.5_1_4:164775306-164909688:-|nuORF	REV__ENST00000503104.5_1_4:164775306-164909688:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7747802734375	2	494.774731	987.534909	0.057696	2.8547E-05	0.097858	4.8417E-05	0.15555	7.6964E-05	494.77472324366863	49.839	0.55312	49.688	49.407	49.96	-0.1512					43	14	5	0	0	0	0.47665	1	5156	5156		87.754	10.98	1	6218900	+		82968	33945	57815	57909	92029	92029					0.040642684378553895
VEKQKVINE	9	Unmodified	_VEKQKVINE_					0	0	0		nc|ENSG00000141052|Q8IZQ8-2|MYOCD;MYOCD|p.L825Afs*4|1|0.18|ENSG00000141052|chr17:12763300-12763322|CTTCTAAAAATTGGGAGCGAAGA/-|frameshift_variant;MYOCD|p.F842Lfs*14|1|0.08|ENSG00000141052|chr17:12763352-12763353|-/A|frameshift_variant;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.810546875	2	543.811313	1085.60807	-1.0481	-0.00056999	-0.11497	-6.2524E-05	-1.1631	-0.00063252	543.8112096698534	44.015	1.3038	43.911	43.363	44.667	-0.10468					83	34	5	0	0	0	0.030064	2	4100	4063;4100		141.52	5.2523	1	9210600			82969	5467	57816	57910	92030;92031	92031					0.06869397160471635
VEKQPPLHP	9	Unmodified	_VEKQPPLHP_					0	0	0			REV__ENST00000526030.1_1_11:77938056-78128734:-|nuORF	REV__ENST00000526030.1_1_11:77938056-78128734:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.7645874023438	2	522.795466	1043.57638	-0.57502	-0.00030062	3.8507	0.0020131	3.2756	0.0017125	522.7970514020546	36.052	0.3788	36.09	35.855	36.234	0.038044					14	10	2	0	0	0	0.024	1	2735	2735		55.504	0	1	328520	+		82970	34428	57817	57911	92032	92032					0.056334491971938405
VEKRAVLL	8	Unmodified	_VEKRAVLL_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.3031311035156	2	464.302927	926.591301	-0.024529	-1.1389E-05	-0.16081	-7.4664E-05	-0.18534	-8.6052E-05	464.30269718180347	35.18	0.74677	34.964	34.671	35.418	-0.21556					47	18	4	0	0	0	0.44658	1	2651	2651		90.777	8.4716	1	2723000			82971	7027	57818	57912	92033	92033					0.125069410651804
VEKRAVLL	8	Unmodified	_VEKRAVLL_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.3028869628906	2	464.302927	926.591301	-0.41748	-0.00019384	0.32108	0.00014908	-0.096394	-4.4756E-05	464.3028918834726	35.159	0.78765	34.946	34.685	35.472	-0.21246					47	19	4	0	0	0	0.56592	1	2652	2652		79.451	2.6769	1	2290600			82972	7027	57818	57912	92034	92034					0.125069410651804
VEKRAVLL	8	Unmodified	_VEKRAVLL_					0	0	0		nc|ENSG00000163026|Q9H6R7-3|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	nc|ENSG00000163026|Q9H6R7-3|WDCP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.3031311035156	2	464.302927	926.591301	-0.55791	-0.00025904	0.36123	0.00016772	-0.19668	-9.132E-05	464.30289491124677	35.089	1.2108	34.902	34.241	35.452	-0.18675					58	30	4	0	0	0	0.44658	2	2620	2620;2634		90.777	3.0224	1	2228500			82973	7027	57818	57912	92035;92036	92035					0.125069410651804
VEKSEQEDD	9	Unmodified	_VEKSEQEDD_					0	0	0			REV__NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	REV__NCAPG|p.D828*|1|0.24|ENSG00000109805|chr4:17839689-17839690|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7672119140625	2	539.730383	1077.44621	-1.5252	-0.00082319	1.8803	0.0010149	0.35514	0.00019168	540.2342993627128	27.384	0.17871	27.465	27.392	27.571	0.081291					7	4	2	0	0	0	0.024323	1	1456	1456		44.117	0	1	49550	+		82974	21817	57819	57913	92037	92037					-0.0894123638313431
VEKTPSLPD	9	Unmodified	_VEKTPSLPD_					0	0	0		nc|ENSG00000168546|O00451-2|GFRA2;nc|ENSG00000168546|O00451-3|GFRA2;ENSG00000168546|ENST00000524240|GFRA2;ENST00000306793.4_1_8:21550792-21640469:-|nuORF	nc|ENSG00000168546|O00451-2|GFRA2	nc|ENSG00000168546|O00451-2|GFRA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.3058166503906	2	493.263665	984.512776	-0.43764	-0.00021587	0.0034215	1.6877E-06	-0.43422	-0.00021418	493.26377965341385	69.663	0.6747	69.679	69.28	69.955	0.015129					21	16	2	0	0	0	0.024292	1	8304	8304		49.442	0	1	385140			82975	7838	57820	57914	92038	92038					0.01990043969431099
VEKVKRIAV	9	Unmodified	_VEKVKRIAV_					0	0	0			REV__ENSG00000196329|ENST00000358647|GIMAP5	REV__ENSG00000196329|ENST00000358647|GIMAP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.30615234375	2	521.342584	1040.67061	-0.65558	-0.00034178	-1.1671	-0.00060844	-1.8227	-0.00095023	521.3419112830975	46.991	0.1511	47.05	46.918	47.069	0.059097					5	3	2	0	0	0	0.024477	1	4618	4618		44.117	19.914	1	163240	+		82976	28164	57821	57915	92039	92039					0.15190588019322604
VELASRVK	8	Unmodified	_VELASRVK_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7853088378906	2	451.276909	900.539266	-0.10572	-4.771E-05	0.79798	0.00036011	0.69226	0.0003124	451.2771418472522	28.995	0.54425	29.076	28.826	29.371	0.080811					29	13	3	0	0	0	0.027866	1	1651	1651		35.618	5.1146	1	558790			82977	18548	57822	57916	92040	92040					0.08501777651429165
VELASRVK	8	Unmodified	_VELASRVK_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	451.276909	900.539266	-0.92278	-0.00041643	2.396	0.0010812	1.4732	0.00066481	451.27785006782005	29.277	1.0668	29.277	28.99	30.057	0	0.074271	0.00085945	NaN	35.618	42	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521030			82978	18548	57822	57916							0.08501777651429165
VELASRVK	8	Unmodified	_VELASRVK_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.276909	900.539266	-0.35564	-0.00016049	1.7345	0.00078274	1.3789	0.00062225	451.27755153376523	29.253	0.57958	29.256	28.971	29.551	0.0031357	0.053276	0.00026246	NaN	35.618	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610820			82979	18548	57822	57916							0.08501777651429165
VELDKLKQL	9	Unmodified	_VELDKLKQL_					0	0	0			REV__ENSG00000055813|ENST00000407595|CCDC85A	REV__ENSG00000055813|ENST00000407595|CCDC85A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8033447265625	2	543.331882	1084.64921	-0.83559	-0.000454	-0.16298	-8.8551E-05	-0.99856	-0.00054255	543.3317393230504	56.922	1.0308	56.922	56.314	57.345	0					58	27	3	0	0	0	0.024374	1	6389	6389		32.812	0	1	1061500	+		82980	20207	57823	57917	92041	92041					0.11027158199954101
VELEGIKKAF	10	Unmodified	_VELEGIKKAF_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.329345703125	2	567.331882	1132.64921	0.30028	0.00017036	-3.0059	-0.0017053	-2.7056	-0.001535	567.3299930544371	88.156	1.3452	88.025	87.056	88.401	-0.13135					87	32	4	0	0	0	1.1005	1	10787	10787		10.866	2.6343	1	1707200	+		82981	28313	57824	57918	92042	92042					0.0881915819995811
VELEKVVL	8	Unmodified	_VELEKVVL_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.7893371582031	2	464.789318	927.564084	-0.3116	-0.00014483	0.41708	0.00019385	0.10547	4.9024E-05	464.7894328741805	69.964	0.74973	69.697	69.41	70.159	-0.26725					46	17	4	0	0	0	0.27973	2	8124	8124;8134		120.62	0	1	1561700			82982	2461	57825	57919	92043;92044	92043					0.09740412734140591
VELEKVVL	8	Unmodified	_VELEKVVL_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7892150878906	2	464.789318	927.564084	0.076677	3.5639E-05	-0.075088	-3.49E-05	0.0015891	7.3861E-07	464.78922666920295	69.84	0.82629	69.589	69.317	70.143	-0.25063					48	19	4	0	0	0	0.32162	2	8129	8118;8129		108.09	0	1	1764600			82983	2461	57825	57919	92045;92046	92046					0.09740412734140591
VELEKVVL	8	Unmodified	_VELEKVVL_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.788818359375	2	464.789318	927.564084	-0.083773	-3.8937E-05	0.093238	4.3336E-05	0.0094649	4.3992E-06	464.78926971630017	69.8	0.7808	69.578	69.307	70.087	-0.22245					46	18	4	0	0	0	0.32162	1	8101	8101		108.09	0	1	1704600			82984	2461	57825	57919	92047	92047					0.09740412734140591
VELFFYLT	8	Unmodified	_VELFFYLT_					0	0	0		ENSG00000108960|ENST00000262065|MMD	ENSG00000108960|ENST00000262065|MMD	ENSG00000108960|ENST00000262065|MMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.3082275390625	2	516.276044	1030.53753	0.064696	3.3401E-05	-2.4361	-0.0012577	-2.3714	-0.0012243	516.2744316452693	87.165	0.46005	87.027	86.787	87.248	-0.13734					16	10	2	0	0	0	0.027866	1	10592	10592		31.955	0	1	94288			82985	2952	57826	57920	92048	92048					0.02348723842783329
VELFFYLT	8	Unmodified	_VELFFYLT_					0	0	0		ENSG00000108960|ENST00000262065|MMD	ENSG00000108960|ENST00000262065|MMD	ENSG00000108960|ENST00000262065|MMD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.276044	1030.53753	-0.37236	-0.00019224	4.2031	0.00217	3.8308	0.0019777	516.279880526119	86.88	0.33361	86.901	86.634	86.968	0.021255	-0.16027	0.0050893	NaN	30.504	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35498			82986	2952	57826	57920							0.02348723842783329
VELFYDAY	8	Unmodified	_VELFYDAY_					0	0	0			REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.25	2	510.239658	1018.46476	-0.48369	-0.0002468	-3.7332	-0.0019049	-4.2169	-0.0021516	510.2380467044994	52.478	0.23717	52.359	52.243	52.48	-0.11875					8	5	2	0	0	0	0.027866	1	5460	5460		28.254	0	1	66255	+		82987	21667	57827	57921	92049	92049					-0.043730299506364645
VELKHAQI	8	Unmodified	_VELKHAQI_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.2768859863281	2	469.276909	936.539266	0.01001	4.6973E-06	-0.032594	-1.5296E-05	-0.022584	-1.0598E-05	469.2768016189534	49.86	1.0709	49.86	49.473	50.544	0					66	30	3	0	0	0	0.845	1	5165	5165		55.504	2.1528	1	4447200	+		82988	20648	57828	57922	92050	92050					0.06845777651415119
VELKRGVAL	9	Unmodified	_VELKRGVAL_					0	0	0			REV__ENST00000444319.1_1_13:30944653-30947955:-|nuORF	REV__ENST00000444319.1_1_13:30944653-30947955:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.8135986328125	2	492.813659	983.612765	-0.19088	-9.4067E-05	-0.10165	-5.0093E-05	-0.29253	-0.00014416	492.8134768205706	53.629	0.96735	53.432	53.201	54.168	-0.19739					61	28	4	0	0	0	0.2101	1	5634	5634		87.696	5.4559	1	4620900	+		82989	32588	57829	57923	92051	92051					0.12030326093884014
VELKRLANE	9	Unmodified	_VELKRLANE_					0	0	0			REV__GABRA6|p.G19R|1|0.35|ENSG00000145863|chr5:161686246-161686246|G/A|missense_variant	REV__GABRA6|p.G19R|1|0.35|ENSG00000145863|chr5:161686246-161686246|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.295166015625	2	536.31148	1070.60841	-0.68654	-0.0003682	1.9981	0.0010716	1.3116	0.00070342	536.3116761865138	56.313	0.24262	56.156	55.972	56.215	-0.15656					8	5	2	0	0	0	0.024261	1	6101	6101		54.776	7.119	1	71783	+		82990	36055	57830	57924	92052	92052					0.07592816880310238
VELKTVRSN	9	Unmodified	_VELKTVRSN_					0	0	0		ENSG00000181626|ENST00000587848|ANKRD62;nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENST00000434304.2_1_22:17154630-17158220:-|nuORF	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3035278320312	2	523.303655	1044.59276	0.13302	6.9608E-05	-1.6088	-0.00084187	-1.4758	-0.00077227	523.302381243852	86.951	3.0538	86.916	86.216	89.27	-0.035362					264	72	4	0	0	0	0.5973	1	11015	11015		52.937	5.2794	1	10615000			82991	9054	57831	57925	92053	92053					0.07224530363305348
VELLEVTL	8	Unmodified	_VELLEVTL_					0	0	0		nc|ENSG00000165801|Q8TER5-3|ARHGEF40;nc|ENSG00000165801|Q8TER5-4|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	nc|ENSG00000165801|Q8TER5-3|ARHGEF40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.7991638183594	2	458.273501	914.532449	-0.10122	-4.6386E-05	-2.5719	-0.0011786	-2.6731	-0.001225	458.2743496219209	72.924	0.13062	72.647	72.582	72.713	-0.2769					4	2	2	0	0	0	0.027866	1	8550	8550		50.025	0	1	20914			82992	18469	57832	57926	92054	92054					0.07176419980191895
VELLLPGGV	9	Unmodified	_VELLLPGGV_					0	0	0			REV__ENST00000494781.5_1_6:167412945-167425107:+|nuORF	REV__ENST00000494781.5_1_6:167412945-167425107:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.2577209472656	2	448.776211	895.537869	0.34319	0.00015402	-0.031051	-1.3935E-05	0.31214	0.00014008	448.7759884244427	86.848	0.71741	86.803	86.466	87.184	-0.045105					26	16	3	0	0	0	0.024535	1	10837	10837		12.207	3.9756	1	172840	+		82993	28724	57833	57927	92055	92055					0.08592143562680121
VELLPKNVN	9	Unmodified	_VELLPKNVN_					0	0	0		ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;LARP7|p.T405Qfs*5|1|0.41|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant	ENSG00000174720|ENST00000344442|LARP7	ENSG00000174720|ENST00000344442|LARP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2689208984375	2	513.303124	1024.5917	0.1725	8.8546E-05	3.3368	0.0017128	3.5093	0.0018013	513.3045625881675	78.905	1.268	78.65	78.212	79.48	-0.25471					57	29	4	0	0	0	0.024447	1	9512	9512		32.812	10.853	1	610500			82994	8491	57834	57928	92056	92056					0.0803831599437217
VELLPKNVN	9	Unmodified	_VELLPKNVN_					0	0	0		ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;LARP7|p.T405Qfs*5|1|0.41|ENSG00000174720|chr4:112649598-112649598|A/-|frameshift_variant	ENSG00000174720|ENST00000344442|LARP7	ENSG00000174720|ENST00000344442|LARP7	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	513.303124	1024.5917	0.081555	4.1862E-05	3.636	0.0018664	3.7175	0.0019082	513.3048161068251	78.739	0.8924	78.583	78.297	79.189	-0.15591	-0.034384	6.5794E-05	NaN	40.778	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660320			82995	8491	57834	57928							0.0803831599437217
VELPKKLL	8	Unmodified	_VELPKKLL_					0	0	0			REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.31536865234375	2	470.315503	938.616454	-0.27778	-0.00013065	0.37359	0.00017571	0.095808	4.506E-05	470.31554670627236	56.263	1.1121	56.107	55.535	56.648	-0.15655					78	28	4	0	0	0	0.33369	2	6071	6071;6094		106.42	5.3007	1	5525100	+		82996	22050	57835	57929	92057;92058	92057					0.14468995867753165
VELPKKLL	8	Unmodified	_VELPKKLL_					0	0	0			REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.3153991699219	2	470.315503	938.616454	0.35122	0.00016518	-0.27939	-0.0001314	0.071833	3.3784E-05	470.31523834516287	56.345	1.1351	56.129	55.598	56.733	-0.21607					85	29	4	0	0	0	0.39824	1	6081	6081		97.473	0	1	6063100	+		82997	22050	57835	57929	92059	92059					0.14468995867753165
VELPKKLL	8	Unmodified	_VELPKKLL_					0	0	0			REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	REV__PCDHB15|p.L327Ffs*21|1|0.22|ENSG00000113248|chr5:141246556-141246556|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.315673828125	2	470.315503	938.616454	-0.59671	-0.00028064	0.67347	0.00031674	0.076759	3.6101E-05	470.31569899175867	56.428	1.1519	56.203	55.7	56.851	-0.2248					82	29	4	0	0	0	0.42327	3	6106	6093;6106;6119		94.006	0	1	5121100	+		82998	22050	57835	57929	92060;92061;92062	92061					0.14468995867753165
VELRGQPVT	9	Unmodified	_VELRGQPVT_					0	0	0			REV__KMT2D|p.K1466Qfs*25|1|0.1|ENSG00000167548|chr12:49046631-49046632|-/G|frameshift_variant	REV__KMT2D|p.K1466Qfs*25|1|0.1|ENSG00000167548|chr12:49046631-49046632|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.7662658691406	2	499.785099	997.555644	-0.36605	-0.00018295	-0.52513	-0.00026245	-0.89118	-0.0004454	500.28792717223104	36.631	0.17645	36.669	36.545	36.721	0.038044					6	4	2	0	0	0	0.023239	1	2875	2875		84.916	16.129	1	48491	+		82999	36191	57836	57930	92063	92063					0.05676858817525954
VELRGQPVT	9	Unmodified	_VELRGQPVT_					0	0	0			REV__KMT2D|p.K1466Qfs*25|1|0.1|ENSG00000167548|chr12:49046631-49046632|-/G|frameshift_variant	REV__KMT2D|p.K1466Qfs*25|1|0.1|ENSG00000167548|chr12:49046631-49046632|-/G|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.785099	997.555644	-0.049838	-2.4908E-05	-0.35149	-0.00017567	-0.40133	-0.00020058	499.78510286945834	36.639	0.51905	36.434	36.242	36.762	-0.20518	-0.11764	0.00014179	NaN	84.916	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97959	+		83000	36191	57836	57930							0.05676858817525954
VELRKNLAA	9	Unmodified	_VELRKNLAA_					0	0	0		ENSG00000256525|ENST00000539111|POLG2;ENST00000585141.5_1_17:62481823-62493086:-|nuORF	ENSG00000256525|ENST00000539111|POLG2	ENSG00000256525|ENST00000539111|POLG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3076477050781	2	507.308741	1012.60293	-0.8274	-0.00041975	-0.78171	-0.00039657	-1.6091	-0.00081632	507.3084751133819	43.57	1.8058	43.333	42.879	44.685	-0.23736					159	48	6	0	0	0	0.33245	1	3999	3999		71.296	5.4925	1	107780000			83001	10909	57837	57931	92064	92064					0.09713138088500273
VELRKNLAA	9	Unmodified	_VELRKNLAA_					0	0	0		ENSG00000256525|ENST00000539111|POLG2;ENST00000585141.5_1_17:62481823-62493086:-|nuORF	ENSG00000256525|ENST00000539111|POLG2	ENSG00000256525|ENST00000539111|POLG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3080749511719	2	507.308741	1012.60293	-1.0431	-0.00052917	-0.64497	-0.0003272	-1.6881	-0.00085637	507.3085410053728	43.586	1.6368	43.367	43.032	44.668	-0.21939					155	44	6	0	0	0	0.20967	2	3999	3965;3999		87.754	5.5138	1	106880000			83002	10909	57837	57931	92065;92066	92066					0.09713138088500273
VELRVHYT	8	Unmodified	_VELRVHYT_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7493896484375	2	508.779816	1015.54508	-0.82314	-0.0004188	3.8263	0.0019467	3.0031	0.0015279	508.78165329051205	29.431	0.51544	29.509	29.327	29.842	0.078344					22	12	2	0	0	0	0.027866	1	1805	1805		55.504	2.1528	1	122870	+		83003	19884	57838	57932	92067	92067					0.03792876163083747
VELRVLALP	9	Unmodified	_VELRVLALP_					0	0	0		ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.3235168457031	2	505.32386	1008.63317	-0.41311	-0.00020875	-0.55573	-0.00028082	-0.96884	-0.00048958	505.3239398964379	79.056	3.538	79.056	78.616	82.154	0					279	85	6	0	0	0	0.6504	1	9782	9782		49.442	3.4896	1	98664000			83004	8393	57839	57933	92068	92068					0.12919496753693238
VELRVLALP	9	Unmodified	_VELRVLALP_					0	0	0		ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.32379150390625	2	505.32386	1008.63317	0.12083	6.106E-05	-0.87121	-0.00044024	-0.75037	-0.00037918	505.32350651286185	79.073	3.4594	78.842	78.346	81.805	-0.23141					204	82	5	0	0	0	0.45795	1	9496	9496		62.107	7.3311	1	35664000			83005	8393	57839	57933	92069	92069					0.12919496753693238
VELSPWVI	8	Unmodified	_VELSPWVI_					0	0	0		ENST00000281456.10_1_4:186064458-186064554:+|nuORF	ENST00000281456.10_1_4:186064458-186064554:+|nuORF	ENST00000281456.10_1_4:186064458-186064554:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3104248046875	2	471.768386	941.522219	0.074178	3.4995E-05	-4.3454	-0.00205	-4.2712	-0.002015	471.7662114531755	41.595	0.58548	41.459	41.255	41.84	-0.13553					27	15	2	0	0	0	0.027866	1	3680	3680		74.517	0	1	212590			83006	11720	57840	57934	92070	92070					0.04911857045601664
VELSPWVI	8	Unmodified	_VELSPWVI_					0	0	0		ENST00000281456.10_1_4:186064458-186064554:+|nuORF	ENST00000281456.10_1_4:186064458-186064554:+|nuORF	ENST00000281456.10_1_4:186064458-186064554:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.768386	941.522219	-0.24599	-0.00011605	-4.201	-0.0019819	-4.447	-0.002098	471.7661084279209	41.899	0.62637	41.667	41.311	41.937	-0.23186	0.091814	6.4941E-05	NaN	74.517	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171500			83007	11720	57840	57934							0.04911857045601664
VELSPWVI	8	Unmodified	_VELSPWVI_					0	0	0		ENST00000281456.10_1_4:186064458-186064554:+|nuORF	ENST00000281456.10_1_4:186064458-186064554:+|nuORF	ENST00000281456.10_1_4:186064458-186064554:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.768386	941.522219	-0.35549	-0.00016771	-4.2761	-0.0020173	-4.6316	-0.002185	471.7662107033857	41.829	0.57831	41.599	41.354	41.932	-0.23029	0.023795	-5.8703E-06	NaN	74.517	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168340			83008	11720	57840	57934							0.04911857045601664
VELTGPQKW	9	Unmodified	_VELTGPQKW_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3049926757812	2	529.287474	1056.5604	-0.5132	-0.00027163	-0.8718	-0.00046143	-1.385	-0.00073306	529.2867546230947	64.774	0.47144	64.518	64.307	64.778	-0.25562					16	11	2	0	0	0	0.024539	1	7335	7335		27.882	13.017	1	135390	+		83009	22971	57841	57935	92071	92071					0.03437742960295509
VELTRTDL	8	Unmodified	_VELTRTDL_					0	0	0			REV__ENSG00000164362|ENST00000310581|TERT	REV__ENSG00000164362|ENST00000310581|TERT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7634582519531	2	473.763832	945.513111	-0.33077	-0.00015671	-0.021666	-1.0264E-05	-0.35244	-0.00016697	473.7637647990358	23.132	0.64179	22.952	22.559	23.201	-0.17989					35	13	4	0	0	0	0.62178	1	885	885		74.255	0.28031	1	1714000	+		83010	25746	57842	57936	92072	92072					0.03817463689279066
VELVMLLCS	9	Unmodified	_VELVMLLCS_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	ENSG00000172915|ENST00000379939|NBEA;LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.29119873046875	2	503.769214	1005.52388	-0.22943	-0.00011558	0.82133	0.00041376	0.5919	0.00029818	503.7694067371497	55.204	0.4056	54.973	54.785	55.19	-0.23087					17	11	2	0	0	0	0.02435	1	5881	5881		42.396	0	1	228800			83011	10155;8321	57843	57937	92073	92073					0.021334067477141616
VELVVQDLSN	10	Unmodified	_VELVVQDLSN_					0	0	0			REV__ENSG00000135426|ENST00000449076|TESPA1	REV__ENSG00000135426|ENST00000449076|TESPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.25927734375	2	558.300778	1114.587	0.7294	0.00040723	-4.2689	-0.0023833	-3.5395	-0.0019761	558.2988197885828	85.498	0.41976	85.349	85.114	85.534	-0.14967					13	9	2	0	0	0	0.03519	1	10341	10341		79.713	26.361	1	44440	+		83012	23543	57844	57938	92074	92074					0.03429387060964473
VELVVQDLSN	10	Unmodified	_VELVVQDLSN_					0	0	0			REV__ENSG00000135426|ENST00000449076|TESPA1	REV__ENSG00000135426|ENST00000449076|TESPA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	558.300778	1114.587	0.23778	0.00013275	-3.6137	-0.0020175	-3.3759	-0.0018848	558.2989497553157	85.642	0.12413	85.447	85.345	85.469	-0.19508	0.049344	0.00043658	NaN	79.713	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27256	+		83013	23543	57844	57938							0.03429387060964473
VELWRQVL	8	Unmodified	_VELWRQVL_					0	0	0			REV__ENST00000580193.1_1_18:14630000-14630792:-|nuORF	REV__ENST00000580193.1_1_18:14630000-14630792:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3247680664062	2	521.805834	1041.59712	-1.5968	-0.00083324	-0.36772	-0.00019188	-1.9646	-0.0010251	521.8055456854461	49.356	0.8793	49.431	48.736	49.615	0.074196					21	11	2	0	0	0	0.027866	1	5057	5057		73.975	7.5455	1	931620	+		83014	22535	57845	57939	92075	92075					0.0779803957684635
VELYDSDA	8	Unmodified	_VELYDSDA_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.23297119140625	2	456.203273	910.391992	-0.46606	-0.00021262	2.0293	0.00092577	1.5632	0.00071316	456.2040444321483	29.76	0.50452	29.514	29.273	29.777	-0.24524					19	11	2	0	0	0	0.027866	1	1838	1838		60.294	12.378	1	126140			83015	10569	57846	57940	92076	92076					-0.06678783744041539
VELYTTLKP	9	Unmodified	_VELYTTLKP_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|25|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|25|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.3067626953125	2	532.305332	1062.59611	-0.18073	-9.6201E-05	-1.3857	-0.00073762	-1.5664	-0.00083382	532.3039933121048	58.47	0.8797	58.47	57.835	58.714	0					43	23	3	0	0	0	0.024457	1	6663	6663		29.15	0	1	1742700	+		83016	36239	57847	57941	92077	92077					0.06731780417271693
VEMCVRPSY	9	Unmodified	_VEMCVRPSY_					0	0	0		ENST00000375245.8_1_10:32096390-32096486:-|nuORF	ENST00000375245.8_1_10:32096390-32096486:-|nuORF	ENST00000375245.8_1_10:32096390-32096486:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2823486328125	2	542.25172	1082.48889	-1.8647	-0.0010111	1.4781	0.0008015	-0.38655	-0.00020961	542.2522408453939	52.288	0.77274	52.019	51.62	52.393	-0.26903					52	20	3	0	0	0	0.024436	1	5435	5435		23.042	0	1	850920			83017	13154	57848	57942	92078	92078					-0.049058360602430184
VEMDTDQLK	9	Unmodified	_VEMDTDQLK_					0	0	0		ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant;nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.T653Ffs*12|1|0.05|ENSG00000175054|chr3:142556498-142556504|CTGCTGT/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	ATR|p.M2526Rfs*15|1|0.08|ENSG00000175054|chr3:142457682-142457682|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.3340454101562	2	539.757889	1077.50123	-0.024101	-1.3009E-05	-0.10818	-5.8389E-05	-0.13228	-7.1398E-05	539.7565911748078	78.468	0.99267	78.276	78.056	79.049	-0.1921					52	23	4	0	0	0	0.023239	1	9778	9778		74.255	10.949	1	289590			83018	163	57849	57943	92079	92079					-0.03442521116221542
VEMIPPSK	8	Unmodified	_VEMIPPSK_					0	0	0			REV__ENSG00000136449|ENST00000323776|MYCBPAP	REV__ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7843933105469	2	450.746596	899.478639	0.16133	7.2718E-05	3.6113	0.0016278	3.7726	0.0017005	450.7484615341523	28.686	0.29181	28.767	28.615	28.907	0.080811					15	6	3	0	0	0	0.027866	1	1624	1624		60.972	0	1	59623	+		83019	23657	57850	57944	92080	92080					0.024879242768406584
VEMIQLHH	8	Unmodified	_VEMIQLHH_					0	0	0			REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF	REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.3036193847656	2	503.760569	1005.50659	-0.42467	-0.00021393	4.4284	0.0022309	4.0038	0.0020169	503.7626061969876	23.372	0.63404	23.192	22.929	23.563	-0.17989					22	14	2	0	0	0	0.027866	1	936	936		29.15	0	1	400470	+		83020	31266	57851	57945	92081	92081					0.00405247256912844
VEMLDELVEL	10	Oxidation (M)	_VEM(Oxidation (M))LDELVEL_		VEM(1)LDELVEL		VEM(41)LDELVEL	0	0	1			REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.53662109375	3	402.537178	1204.58971	0.51166	0.00020596	-2.306	-0.00092824	-1.7943	-0.00072228	402.5362114269767	32.674	1.0761	32.437	31.954	33.03	-0.23666					44	25	3	0	0	0	1.0344	1	2274	2274		41.427	6.2746	1	3852400	+		83021	23469	57852	57946	92082	92082		697			-0.004405255964002208
VEMRKKLS	8	Unmodified	_VEMRKKLS_					0	0	0			REV__nc|nan|Q49AR2-2|C5orf22	REV__nc|nan|Q49AR2-2|C5orf22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2677001953125	2	495.791869	989.569186	-0.57295	-0.00028406	0.40663	0.0002016	-0.16632	-8.2461E-05	495.7919210981648	34.741	0.98258	34.792	34.367	35.349	0.050255					53	25	3	0	0	0	0.027866	1	2574	2574		42.396	16.946	1	2100800	+		83022	20692	57853	57947	92083	92083					0.07398393325115649
VEMRKKLS	8	Unmodified	_VEMRKKLS_					0	0	0			REV__nc|nan|Q49AR2-2|C5orf22	REV__nc|nan|Q49AR2-2|C5orf22	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	495.791869	989.569186	-0.16266	-8.0648E-05	-0.096343	-4.7766E-05	-0.25901	-0.00012841	495.79167602682065	34.858	0.82748	34.858	34.552	35.38	0	0.089522	-0.00027572	NaN	42.396	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2368500	+		83023	20692	57853	57947							0.07398393325115649
VENAVHPV	8	Unmodified	_VENAVHPV_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.73187255859375	2	432.732335	863.450116	0.88379	0.00038244	-2.0138	-0.00087142	-1.13	-0.00048898	432.73139151529796	99.129	1.5961	98.994	98.234	99.83	-0.13526					95	38	3	0	0	0	1.0574	1	12238	12238		25.45	0	1	2327700	+		83024	29044	57854	57948	92084	92084					0.012929426918958598
VENEAMCQYV	10	Oxidation (M)	_VENEAM(Oxidation (M))CQYV_		VENEAM(1)CQYV		VENEAM(67)CQYV	0	0	1			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.2473754882812	2	601.246831	1200.47911	-0.38166	-0.00022947	0.58304	0.00035055	0.20138	0.00012108	601.2470115431221	50.335	0.6376	50.056	49.802	50.44	-0.27977					46	16	5	0	0	0	0.69662	1	5107	5107		67.494	9.2637	1	2327700	+		83025	24369	57855	57949	92085	92085		724			-0.11311068856298334
VENEAMCQYV	10	Oxidation (M)	_VENEAM(Oxidation (M))CQYV_					0	0	1			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	601.246831	1200.47911	-1.543	-0.00092775	1.5569	0.00093609	0.013871	8.3398E-06	601.2475798178343	49.898	0.65451	49.898	49.62	50.274	0	-0.052359	0.00068232	NaN	67.494	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1460700	+		83026	24369	57855	57949				724			-0.11311068856298334
VENEAMCQYV	10	Oxidation (M)	_VENEAM(Oxidation (M))CQYV_					0	0	1			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	601.246831	1200.47911	-0.50233	-0.00030202	0.55542	0.00033395	0.053094	3.1922E-05	601.2470061385861	50.099	0.65326	49.948	49.634	50.287	-0.1512	-0.0023765	-0.00052196	NaN	67.494	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1435100	+		83027	24369	57855	57949				724			-0.11311068856298334
VENEAMCQYV	10	Oxidation (M)	_VENEAM(Oxidation (M))CQYV_					0	0	1			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	601.246831	1200.47911	-1.7131	-0.00103	1.8107	0.0010887	0.097676	5.8727E-05	601.2477098616057	49.762	0.62657	49.836	49.578	50.204	0.074192	-0.11415	0.00098753	NaN	67.494	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1304700	+		83028	24369	57855	57949				724			-0.11311068856298334
VENEAMCQYV	10	Oxidation (M)	_VENEAM(Oxidation (M))CQYV_					0	0	1			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	601.246831	1200.47911	-0.16825	-0.00010116	0.52108	0.0003133	0.35283	0.00021214	601.246902345653	50.082	0.82322	49.976	49.708	50.531	-0.10558	0.026023	-0.00056327	NaN	67.494	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2210000	+		83029	24369	57855	57949				724			-0.11311068856298334
VENEAMCQYV	10	Oxidation (M)	_VENEAM(Oxidation (M))CQYV_					0	0	1			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	601.246831	1200.47911	-0.38166	-0.00022947	0.58304	0.00035055	0.20138	0.00012108	601.2470115431221	50.335	0.6376	50.056	49.802	50.44	-0.27977	0.10542	-0.00048876	NaN	67.494	46	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2327700	+		83030	24369	57855	57949				724			-0.11311068856298334
VENEAMCQYV	10	Oxidation (M)	_VENEAM(Oxidation (M))CQYV_					0	0	1			REV__ENSG00000144857|ENST00000682979|BOC	REV__ENSG00000144857|ENST00000682979|BOC	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	601.246831	1200.47911	0.22578	0.00013575	0.10466	6.2927E-05	0.33044	0.00019868	601.2466658222669	50.168	0.74535	49.988	49.717	50.462	-0.18071	0.03744	-0.001064	NaN	67.494	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2089500	+		83031	24369	57855	57949				724			-0.11311068856298334
VENLFLSLATH	11	Unmodified	_VENLFLSLATH_					0	0	0		ENSG00000164674|ENST00000611299|SYTL3	ENSG00000164674|ENST00000611299|SYTL3	ENSG00000164674|ENST00000611299|SYTL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.3368530273438	2	622.337695	1242.66084	0.86696	0.00053954	-2.6556	-0.0016527	-1.7887	-0.0011132	622.3359965526924	109.95	0.83836	109.95	109.77	110.61	0					74	26	4	0	0	0	1.0292	1	13982	13982		30.318	2.2362	1	2123200			83032	7305	57856	57950	92086	92086					0.04921355223291357
VENLLWVD	8	Unmodified	_VENLLWVD_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2697448730469	2	494.260925	986.507297	-0.90603	-0.00044781	-1.816	-0.00089758	-2.722	-0.0013454	494.25984608711025	25.606	0.53861	25.38	25.148	25.686	-0.22683					26	12	3	0	0	0	0.027866	1	1237	1237		34.173	0	1	117010			83033	1037	57857	57951	92087	92087					0.01350365177609092
VENLWPRSY	9	Unmodified	_VENLWPRSY_					0	0	0		ENST00000262544.6_1_20:18516322-18516370:+|nuORF	ENST00000262544.6_1_20:18516322-18516370:+|nuORF	ENST00000262544.6_1_20:18516322-18516370:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.8447875976562	2	582.29583	1162.57711	-0.36057	-0.00020996	4.1509	0.0024171	3.7903	0.0022071	582.2977641551533	68.423	0.80238	68.18	67.667	68.47	-0.24277					32	19	2	0	0	0	0.024541	1	7954	7954		26.693	6.6961	1	231980			83034	11506	57858	57952	92088	92088					0.002322438462442733
VENNDLVI	8	Unmodified	_VENNDLVI_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.284912109375	2	458.242732	914.470912	1.0622	0.00048674	-0.63905	-0.00029284	0.42314	0.0001939	458.2423591908005	59.008	0.72718	59.008	58.643	59.37	0					38	19	3	0	0	0	0.027866	1	6698	6698		71.296	2.811	1	1386700			83035	2734	57859	57953	92089	92089					0.010254882808908405
VENVRCIKR	9	Unmodified	_VENVRCIKR_					0	0	0			REV__ENSG00000088782|ENST00000382388|DEFB127	REV__ENSG00000088782|ENST00000382388|DEFB127	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.591552734375	2	558.81895	1115.62335	-0.33996	-0.00018998	-4.1027	-0.0022927	-4.4427	-0.0024826	558.8165855939113	42.078	0.63543	41.847	41.58	42.216	-0.23029					38	17	3	0	0	0	0.024495	1	3805	3805		9.1829	0	1	969520	+		83036	20820	57860	57954	92090	92090					0.07015985476664355
VEPDLEVLD	9	Unmodified	_VEPDLEVLD_					0	0	0			REV__nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	REV__nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8003540039062	2	514.760955	1027.50736	-0.63245	-0.00032556	2.2678	0.0011674	1.6353	0.0008418	514.7619115396236	45.326	0.66305	45.226	44.828	45.491	-0.099445					32	18	2	0	0	0	0.024323	1	4321	4321		44.117	1.7207	1	576000	+		83037	24250	57861	57955	92091	92091					-0.005296796130551229
VEPDSRAPG	9	Unmodified	_VEPDSRAPG_					0	0	0			REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF	REV__ENST00000590637.1_1_17:40257054-40259850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2789306640625	2	464.230156	926.445759	0.4502	0.000209	4.2535	0.0019746	4.7037	0.0021836	464.23142048798394	51.677	0.17888	51.558	51.431	51.61	-0.11875					6	4	2	0	0	0	0.024457	1	5332	5332		29.15	17.639	1	108930	+		83038	35706	57862	57956	92092	92092					-0.02040566521668552
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.869384765625	2	619.871371	1237.72819	-1.0156	-0.00062956	-2.1325	-0.0013219	-3.1482	-0.0019515	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	0.94988	1	11958	11958		47.96	0.30219	1	4459000	+		83039	20317	57863	57957	92093	92093					0.11883385434225602
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.868896484375	2	619.871371	1237.72819	-0.47108	-0.00029201	-2.6122	-0.0016192	-3.0832	-0.0019112	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	0.9728	2	11595	11595;11815		42.864	3.6039	1	4765600	+		83040	20317	57863	57957	92094;92095	92094					0.11883385434225602
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.869384765625	2	619.871371	1237.72819	-0.13269	-8.2249E-05	-2.9862	-0.001851	-3.1189	-0.0019333	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	1.0557	2	11660	11563;11660		23.523	0.73882	1	4730400	+		83041	20317	57863	57957	92096;92097	92097					0.11883385434225602
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.86962890625	2	619.871371	1237.72819	0.45812	0.00028397	-3.8152	-0.0023649	-3.3571	-0.002081	619.8688770335856	104.94	0.57281	104.78	104.47	105.04	-0.16485					46	20	3	0	0	0	1.0557	1	13051	13051		23.523	2.5758	1	167060	+		83042	20317	57863	57957	92098	92098					0.11883385434225602
VEPESVRR	8	Unmodified	_VEPESVRR_					0	0	0		ENST00000480687.5_1_3:49761158-49761296:-|nuORF;ENST00000481959.1_1_3:49761155-49761356:-|nuORF	ENST00000480687.5_1_3:49761158-49761296:-|nuORF	ENST00000480687.5_1_3:49761158-49761296:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.7904968261719	2	486.267073	970.519593	-0.81768	-0.00039761	3.4385	0.001672	2.6208	0.0012744	486.2674359649981	31.92	0.55799	31.989	31.686	32.244	0.06896					22	13	2	0	0	0	0.027866	1	2088	2088		47.916	0	1	79267			83043	15208	57864	57958	92099	92099					0.033154016406683695
VEPLTKLLTH	10	Unmodified	_VEPLTKLLTH_					0	0	0		nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;ENST00000483596.5_1_10:23220925-23250957:+|nuORF	nc|ENSG00000165309|Q5W041-4|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	575.845156	1149.67576	-0.26488	-0.00015253	-3.539	-0.0020379	-3.8039	-0.0021904	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	1.0992	1	11633	11633		32.812	0	1	4946400			83044	7397	57865	57959	92100	92100					0.10690847091291289
VEPLTKLLTH	10	Unmodified	_VEPLTKLLTH_					0	0	0		nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;ENST00000483596.5_1_10:23220925-23250957:+|nuORF	nc|ENSG00000165309|Q5W041-4|ARMC3	nc|ENSG00000165309|Q5W041-4|ARMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8427124023438	2	575.845156	1149.67576	-1.2575	-0.00072414	-2.5466	-0.0014665	-3.8042	-0.0021906	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0616	1	11350	11350		37.812	6.2817	1	6251500			83045	7397	57865	57959	92101	92101					0.10690847091291289
VEPNFITH	8	Unmodified	_VEPNFITH_					0	0	0			REV__nc|ENSG00000109320|P19838|NFKB1	REV__nc|ENSG00000109320|P19838|NFKB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.2899169921875	2	478.745442	955.476331	-0.039621	-1.8968E-05	-3.4632	-0.001658	-3.5028	-0.0016769	478.74350350365995	25.727	0.71863	25.727	25.445	26.163	0					46	16	4	0	0	0	0.027866	1	1225	1225		45.952	15.448	1	558720	+		83046	21790	57866	57960	92102	92102					-0.003187881366329748
VEPPLRQI	8	Unmodified	_VEPPLRQI_					0	0	0			REV__ENSG00000180900|ENST00000356994|SCRIB	REV__ENSG00000180900|ENST00000356994|SCRIB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7876281738281	2	476.284734	950.554916	1.9974	0.00095131	-0.42106	-0.00020054	1.5763	0.00075077	476.28484721972086	59.502	0.56584	59.502	59.145	59.711	0					24	14	2	0	0	0	0.027866	1	6815	6815		45.952	0	1	1391200	+		83047	27370	57867	57961	92103	92103					0.07766064168458797
VEPPLRQI	8	Unmodified	_VEPPLRQI_					0	0	0			REV__ENSG00000180900|ENST00000356994|SCRIB	REV__ENSG00000180900|ENST00000356994|SCRIB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7876281738281	2	476.284734	950.554916	1.8986	0.00090427	-1.9439	-0.00092584	-0.045292	-2.1572E-05	476.2836592203967	59.832	0.92366	59.832	59.295	60.219	0					47	24	3	0	0	0	0.027866	1	6815	6815		45.952	0	1	1382300	+		83048	27370	57867	57961	92104	92104					0.07766064168458797
VEPSGRIG	8	Unmodified	_VEPSGRIG_					0	0	0			REV__ENST00000477184.5_1_7:102123867-102123918:-|nuORF	REV__ENST00000477184.5_1_7:102123867-102123918:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.158447265625	2	407.72451	813.434466	0.14332	5.8436E-05	0.613	0.00024994	0.75633	0.00030837	407.7244750850159	34.928	0.40471	34.716	34.519	34.924	-0.21246					12	9	2	0	0	0	0.027866	1	2605	2605		12.207	0	1	36728	+		83049	33328	57868	57962	92105	92105					0.02028656174866228
VEPTPEAELLA	11	Unmodified	_VEPTPEAELLA_					0	0	0		ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	584.7538452148438	2	584.808436	1167.60232	-0.25873	-0.00015131	3.9623	0.0023172	3.7036	0.0021659	585.3122637990348	70.394	0.31537	70.18	69.937	70.253	-0.21425					11	7	2	0	0	0	0.024649	1	8185	8185		62.107	1.9892	1	423020			83050	9580	57869	57963	92106	92106					0.02522253858160184
VEPTQVQSN	9	Unmodified	_VEPTQVQSN_					0	0	0			REV__ENSG00000160803|ENST00000368309|UBQLN4	REV__ENSG00000160803|ENST00000368309|UBQLN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2486877441406	2	501.248546	1000.48254	0.16682	8.3617E-05	0.009021	4.5217E-06	0.17584	8.8139E-05	501.24847195430425	105.31	0.78471	105.18	104.77	105.56	-0.12444					34	22	2	0	0	0	0.67687	1	13111	13111		47.657	6.8792	1	285490	+		83051	25348	57870	57964	92107	92107					-0.0176831469575518
VEPTSLFIAGV	11	Unmodified	_VEPTSLFIAGV_					0	0	0		ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	ENSG00000182747|ENST00000331858|SLC35D3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.8357543945312	2	566.816064	1131.61758	-0.085358	-4.8382E-05	-0.16746	-9.492E-05	-0.25282	-0.0001433	566.815561549995	22.248	0.47694	22.046	21.808	22.285	-0.20198					19	9	3	0	0	0	0.024724	1	714	714		9.7057	0	1	25421			83052	9158	57871	57965	92108	92108					0.05703165445970626
VEPVLRTKN	9	Unmodified	_VEPVLRTKN_					0	0	0		ENST00000351050.7_1_1:110155437-110155518:-|nuORF	ENST00000351050.7_1_1:110155437-110155518:-|nuORF	ENST00000351050.7_1_1:110155437-110155518:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.3165283203125	2	528.314023	1054.61349	0.75618	0.0003995	-0.14705	-7.7689E-05	0.60913	0.00032181	528.3141069659536	97.333	1.0258	97.21	96.706	97.732	-0.12368					46	22	3	0	0	0	0.89441	1	12082	12082		32.812	2.3088	1	207000			83053	12599	57872	57966	92109	92109					0.08837120742964544
VEQDHPTLV	9	Unmodified	_VEQDHPTLV_					0	0	0			REV__PRKCB|p.P643H|1|0.34|ENSG00000166501|chr16:24220025-24220025|C/A|missense_variant	REV__PRKCB|p.P643H|1|0.34|ENSG00000166501|chr16:24220025-24220025|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7846069335938	2	519.266739	1036.51892	-0.69855	-0.00036273	1.5196	0.00078908	0.82106	0.00042635	519.2675985878795	78.127	0.6591	78.143	77.863	78.522	0.015915					55	15	5	0	0	0	0.02435	1	9571	9571		34.173	7.4796	1	618820	+		83054	37403	57873	57967	92110	92110					0.002125622009543804
VEQGREQT	8	Unmodified	_VEQGREQT_					0	0	0		nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;ENST00000529299.2_1_1:110170417-110171118:+|nuORF	nc|ENSG00000116337|Q01433-5|AMPD2	nc|ENSG00000116337|Q01433-5|AMPD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.755859375	2	473.733063	945.451573	0.15903	7.5337E-05	2.9789	0.0014112	3.138	0.0014866	473.7353424460626	43.022	0.26276	42.909	42.735	42.997	-0.11253					10	6	2	0	0	0	0.027866	1	3898	3898		64.207	3.2353	1	76636			83055	3545	57874	57968	92111	92111					-0.02333468009999251
VEQIEEEI	8	Unmodified	_VEQIEEEI_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7747802734375	2	494.745305	987.476056	0.056517	2.7961E-05	-1.6166	-0.00079981	-1.5601	-0.00077185	494.7441967604847	49.856	0.44444	49.705	49.445	49.889	-0.1512					24	11	3	0	0	0	0.027866	1	5156	5156		82.305	0	1	249420			83056	9435	57875	57969	92112	92112					-0.018182526471264282
VEQKFGLHLR	10	Unmodified	_VEQKFGLHLR_					0	0	0			REV__ENST00000409609.5_1_2:189158598-189158697:+|nuORF	REV__ENST00000409609.5_1_2:189158598-189158697:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5500183105469	3	409.571657	1225.69314	-0.043554	-1.7838E-05	0.2995	0.00012267	0.25595	0.00010483	409.57137863728644	53.194	0.36759	53.047	52.835	53.203	-0.14724					14	9	2	0	0	0	0.03519	1	5725	5725		31.634	15.627	1	68092	+		83057	31966	57876	57970	92113	92113					0.08932187416939996
VEQLGLSGLRK	11	Unmodified	_VEQLGLSGLRK_					0	0	0			REV__ENST00000533499.1_1_11:62560034-62562480:-|nuORF	REV__ENST00000533499.1_1_11:62560034-62562480:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.8682556152344	3	400.575067	1198.70337	4.7985	0.0019222	-1.7577	-0.00070409	3.0408	0.0012181	400.57439220573326	17.672	0.59109	17.672	17.349	17.94	0					16	11	2	0	0	0	0.024821	1	188	188		14.086	8.3872	1	27452	+		83058	34607	57877	57971	92114	92114					0.11196750351496121
VEQLGLSGLRK	11	Unmodified	_VEQLGLSGLRK_					0	0	0			REV__ENST00000533499.1_1_11:62560034-62562480:-|nuORF	REV__ENST00000533499.1_1_11:62560034-62562480:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	400.575067	1198.70337	0.97804	0.00039178	2.0965	0.0008398	3.0745	0.0012316	400.575601778729	17.776	0.39565	17.633	17.453	17.849	-0.14278	-0.083613	0.0033751	NaN	9.6461	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17818	+		83059	34607	57877	57971							0.11196750351496121
VEQLREALH	9	Unmodified	_VEQLREALH_					0	0	0		nc|ENSG00000173153|P11474-2|ESRRA;ENSG00000173153|ENST00000000442|ESRRA	nc|ENSG00000173153|P11474-2|ESRRA	nc|ENSG00000173153|P11474-2|ESRRA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.8030395507812	2	547.80128	1093.58801	-0.63951	-0.00035033	1.5488	0.00084842	0.90926	0.00049809	547.8012374687493	30.798	1.0485	30.62	30.203	31.252	-0.17818					69	25	4	0	0	0	0.6238	1	1999	1999		51.193	1.6567	1	1290200			83060	8344	57878	57972	92115	92115					0.04495646220493654
VEQLREALH	9	Unmodified	_VEQLREALH_					0	0	0		nc|ENSG00000173153|P11474-2|ESRRA;ENSG00000173153|ENST00000000442|ESRRA	nc|ENSG00000173153|P11474-2|ESRRA	nc|ENSG00000173153|P11474-2|ESRRA	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	547.80128	1093.58801	-0.57434	-0.00031463	1.8483	0.0010125	1.274	0.0006979	547.801424815344	30.93	1.1983	30.689	30.287	31.485	-0.24109	0.020759	0.00031948	NaN	51.193	80	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1434400			83061	8344	57878	57972							0.04495646220493654
VEQLYRHY	8	Unmodified	_VEQLYRHY_					0	0	0			REV__ENSG00000104805|ENST00000405315|NUCB1	REV__ENSG00000104805|ENST00000405315|NUCB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.2733154296875	2	554.282723	1106.55089	1.6556	0.00091765	-1.8519	-0.0010265	-0.19635	-0.00010883	554.7790521155022	36.574	0.20331	36.376	36.292	36.496	-0.19829					9	4	3	0	0	0	0.027866	1	2849	2849		26.796	4.8362	1	100610	+		83062	21465	57879	57973	92116	92116					0.001879746747590616
VEQTGLEPL	9	Unmodified	_VEQTGLEPL_					0	0	0			REV__ENST00000599799.1_1_19:35820106-35820811:+|nuORF	REV__ENST00000599799.1_1_19:35820106-35820811:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.2635498046875	2	493.263665	984.512776	0.90884	0.0004483	-0.93341	-0.00046042	-0.024572	-1.2121E-05	493.2632028296755	71.047	1.3707	71.047	70.569	71.94	0					95	34	5	0	0	0	0.26966	1	8625	8625		79.713	0	1	11696000	+		83063	35832	57880	57974	92117	92117					0.01990043969431099
VEQVRLALDKE	11	Unmodified	_VEQVRLALDKE_					0	0	0			REV__nc|ENSG00000130779|P30622-2|CLIP1	REV__nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.9127197265625	3	433.913748	1298.71942	-0.69342	-0.00030088	-0.88934	-0.0003859	-1.5828	-0.00068678	433.9131221716381	21.025	1.0195	21.025	20.704	21.723	0					79	20	5	0	0	0	0.98082	1	595	595		41.08	8.0407	1	1030200	+		83064	23156	57881	57975	92118	92118					0.0820041179774762
VERALPVLL	9	Unmodified	_VERALPVLL_					0	0	0			REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.32379150390625	2	505.32386	1008.63317	0.12083	6.106E-05	-0.87121	-0.00044024	-0.75037	-0.00037918	505.32350651286185	79.073	3.4594	78.842	78.346	81.805	-0.23141					204	82	5	0	0	0	0.72494	1	9510	9510		44.377	7.2181	1	35664000	+		83065	29379	57882	57976	92119	92119					0.12919496753693238
VERARQVQVA	10	Unmodified	_VERARQVQVA_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.3057861328125	2	578.333279	1154.652	-0.64317	-0.00037197	-1.063	-0.00061478	-1.7062	-0.00098675	578.3334050834371	75.997	0.30228	75.739	75.596	75.898	-0.25866					9	7	2	0	0	0	0.03519	1	9035	9035		26.693	0	1	82342			83066	18548	57883	57977	92120	92120					0.08086426377485623
VERDLKEYL	9	Unmodified	_VERDLKEYL_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	582.8238525390625	2	582.816596	1163.61864	-1.3919	-0.00081121	-2.2448	-0.0013083	-3.6367	-0.0021195	582.8153348839908	78.716	0.37879	78.716	78.531	78.91	0					12	8	2	0	0	0	0.024344	1	9725	9725		54.776	0	1	70397	+		83067	22048	57884	57978	92121	92121					0.043373798149104914
VERDLKEYL	9	Unmodified	_VERDLKEYL_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	582.816596	1163.61864	-0.056426	-3.2886E-05	1.9143	0.0011157	1.8579	0.0010828	582.8176753599788	78.758	0.51645	78.503	78.297	78.814	-0.25471	-0.039727	0.00039496	NaN	37.812	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300510	+		83068	22048	57884	57978							0.043373798149104914
VERDLKEYL	9	Unmodified	_VERDLKEYL_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	582.816596	1163.61864	-0.52763	-0.00030751	2.0855	0.0012155	1.5579	0.00090795	582.8179941509179	78.709	0.56039	78.478	78.176	78.736	-0.23141	-0.065261	0.00059446	NaN	37.812	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350470	+		83069	22048	57884	57978							0.043373798149104914
VERDLKEYL	9	Unmodified	_VERDLKEYL_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	582.816596	1163.61864	-0.44649	-0.00026022	1.8072	0.0010533	1.3607	0.00079304	582.8174582781874	78.631	0.47717	78.475	78.254	78.731	-0.15591	-0.068133	0.00027007	NaN	37.812	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303160	+		83070	22048	57884	57978							0.043373798149104914
VEREAQLV	8	Unmodified	_VEREAQLV_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A;REV__nc|ENSG00000131037|Q8TE68-3|EPS8L1	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.2633056640625	2	472.263999	942.513445	0.45136	0.00021316	-1.1079	-0.0005232	-0.65651	-0.00031004	472.2634781202726	62.647	1.4688	62.709	62.201	63.67	0.062767					109	38	5	0	0	0	0.89627	1	7199	7199		51.335	1.8939	1	18436000			83071	5096;23181	57885	57979	92122	92122					0.039888834091470926
VEREGDHGE	9	Unmodified	_VEREGDHGE_					0	0	0		SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|77|3|anti-sense	SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|77|3|anti-sense	SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|77|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8150634765625	2	514.225602	1026.43665	-0.13087	-6.7296E-05	0.08782	4.516E-05	-0.043047	-2.2136E-05	514.2251233315279	59.91	0.63017	59.709	59.463	60.093	-0.20016					22	16	2	0	0	0	0.024457	1	6892	6892		29.15	6.1071	1	332430			83072	38039	57886	57980	92123	92123					-0.07550959877994501
VERGRGLCAR	10	Unmodified	_VERGRGLCAR_					0	0	0		ENST00000506894.5_1_4:176622911-176923710:-|nuORF	ENST00000506894.5_1_4:176622911-176923710:-|nuORF	ENST00000506894.5_1_4:176622911-176923710:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.8035888671875	2	558.806374	1115.59819	-0.4384	-0.00024498	-4.4233	-0.0024718	-4.8617	-0.0027168	558.8038714821063	49.007	1.0114	48.825	48.408	49.419	-0.18206					76	26	5	0	0	0	0.77808	1	4872	4872		62.107	8.756	1	7281600			83073	15750	57887	57981	92124	92124					0.04501930674086907
VERGRRWLYSL	11	Unmodified	_VERGRRWLYSL_					0	0	0			REV__ENST00000588286.1_1_19:36035906-36036008:-|nuORF	REV__ENST00000588286.1_1_19:36035906-36036008:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2818603515625	3	478.936999	1433.78917	0.23811	0.00011404	-0.67849	-0.00032495	-0.44038	-0.00021091	478.93640327553294	50.263	0.26675	50.344	50.243	50.51	0.080994					9	7	2	0	0	0	0.024816	1	5209	5209		16.53	0	1	75389	+		83074	35649	57888	57982	92125	92125					0.08962335257047016
VERILYSKT	9	Unmodified	_VERILYSKT_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.8086547851562	2	554.821681	1107.62881	-0.0098477	-5.4637E-06	2.4054	0.0013346	2.3956	0.0013291	554.8226041284847	45.913	0.21764	45.817	45.706	45.923	-0.096649					7	5	2	0	0	0	0.024428	1	4381	4381		32.751	0	1	119580			83075	1392	57889	57983	92126	92126					0.07929987540137517
VERKAVLL	8	Unmodified	_VERKAVLL_					0	0	0			REV__VCL-ADK|13|fusion;REV__ENSG00000035403|ENST00000211998|VCL	REV__ENSG00000035403|ENST00000211998|VCL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.3028564453125	2	464.302927	926.591301	-0.41748	-0.00019384	0.32108	0.00014908	-0.096394	-4.4756E-05	464.3028918834726	35.159	0.78765	34.946	34.685	35.472	-0.21246					47	19	4	0	0	0	0.38451	1	2640	2640		99.375	8.5983	1	2290600	+		83076	37775;20060	57890	57984	92127	92127					0.125069410651804
VERKNEELSVL	11	Unmodified	_VERKNEELSVL_					0	0	0		ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	ENSG00000163507|ENST00000295746|CIP2A	MSMS	OPSCC_40_ClassI_Rep-1	4	439.24737548828125	3	439.245386	1314.71433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.64	1	100.51	100.01	101.01	-0.13364								0	0	0	1.1213	1	12483	12483		35.178	5.6275	1				83077	7090	57891	57985	92128	92128					0.06956107935138789
VERLFNKLKT	10	Unmodified	_VERLFNKLKT_					0	0	0			REV__ENSG00000188322|ENST00000341901|SBK1	REV__ENSG00000188322|ENST00000341901|SBK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2389831542969	3	416.587195	1246.73976	-0.41868	-0.00017441	1.0996	0.0004581	0.68096	0.00028368	416.5880010796205	41.908	0.15022	41.676	41.583	41.733	-0.23186					5	3	2	0	0	0	0.03519	1	3711	3711		17.833	4.3252	1	56781	+		83078	28030	57892	57986	92129	92129					0.12625627248212368
VERLLSQED	9	Unmodified	_VERLLSQED_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.8033447265625	2	544.782753	1087.55095	-0.71569	-0.0003899	-0.85646	-0.00046659	-1.5722	-0.00085648	545.2836084273476	57.365	0.66761	57.365	56.936	57.603	0					31	17	3	0	0	0	0.024344	1	6389	6389		37.812	2.6595	1	648550			83079	2641	57893	57987	92130	92130					0.010679298841296259
VERLLSQED	9	Unmodified	_VERLLSQED_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	544.782753	1087.55095	-1.1101	-0.00060478	0.57865	0.00031524	-0.53147	-0.00028954	545.2838921446162	57.214	0.45303	57.31	57.088	57.541	0.095306	0.013695	0.00058519	NaN	37.812	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436800			83080	2641	57893	57987							0.010679298841296259
VERLLSQED	9	Unmodified	_VERLLSQED_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	544.782753	1087.55095	0.0088494	4.821E-06	5.2824	0.0028778	5.2912	0.0028826	545.2863344265322	57.348	0.18227	57.146	57.064	57.247	-0.20209	-0.14964	0.0057102	NaN	37.812	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137440			83081	2641	57893	57987							0.010679298841296259
VERNEDALL	9	Unmodified	_VERNEDALL_					0	0	0			REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13	REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7788696289062	2	529.77747	1057.54039	0.020673	1.0952E-05	3.7403	0.0019815	3.761	0.0019925	529.7793013122537	86.152	0.73918	85.965	85.602	86.341	-0.18696					47	16	4	0	0	0	0.20967	1	10438	10438		87.754	5.5138	1	1080800	+		83082	23355	57894	57988	92131	92131					0.01391947229649304
VERNGQSVQVA	11	Unmodified	_VERNGQSVQVA_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8124389648438	2	593.812376	1185.6102	-1.943	-0.0011537	3.9592	0.002351	2.0162	0.0011973	594.316357453992	110.51	0.53113	110.37	110.09	110.62	-0.13983					35	21	2	0	0	0	1.0532	1	13545	13545		24.232	0.029068	1	56136	+		83083	22183	57895	57989	92132	92132					0.024818258983032138
VERNGQSVQVA	11	Unmodified	_VERNGQSVQVA_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	593.812376	1185.6102	-0.031193	-1.8523E-05	3.4669	0.0020587	3.4357	0.0020402	594.3163286568847	109.96	0.070061	109.97	109.93	110	0.005928	-0.24162	0.00095582	NaN	24.232	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49296	+		83084	22183	57895	57989							0.024818258983032138
VERNGQSVQVA	11	Unmodified	_VERNGQSVQVA_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	593.812376	1185.6102	-0.55919	-0.00033205	2.2744	0.0013506	1.7152	0.0010185	593.8134983360825	110.35	0.57113	110.23	109.99	110.57	-0.12524	0.016511	-0.00046041	NaN	24.232	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55140	+		83085	22183	57895	57989							0.024818258983032138
VERNGQSVQVA	11	Unmodified	_VERNGQSVQVA_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	593.812376	1185.6102	-1.943	-0.0011537	3.9592	0.002351	2.0162	0.0011973	594.316357453992	110.51	0.53113	110.37	110.09	110.62	-0.13983	0.16091	0.0015405	NaN	24.232	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56136	+		83086	22183	57895	57989							0.024818258983032138
VERNGQSVQVA	11	Unmodified	_VERNGQSVQVA_					0	0	0			REV__ENSG00000115257|ENST00000300954|PCSK4	REV__ENSG00000115257|ENST00000300954|PCSK4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	593.812376	1185.6102	0.12296	7.3012E-05	1.6492	0.00097931	1.7721	0.0010523	593.8131186520174	110.42	0.46198	110.28	110.09	110.55	-0.14889	0.064204	-0.001203	NaN	24.232	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17422	+		83087	22183	57895	57989							0.024818258983032138
VERNPVTALE	10	Unmodified	_VERNPVTALE_					0	0	0		NRG3|p.H435N|1|0.24|ENSG00000185737|chr10:82973806-82973806|C/A|missense_variant	NRG3|p.H435N|1|0.24|ENSG00000185737|chr10:82973806-82973806|C/A|missense_variant	NRG3|p.H435N|1|0.24|ENSG00000185737|chr10:82973806-82973806|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.3178100585938	2	564.306395	1126.59824	-0.70788	-0.00039946	4.1643	0.00235	3.4564	0.0019505	564.3084937796167	66.977	0.44356	66.696	66.555	66.998	-0.28148					18	10	3	0	0	0	0.03519	1	7981	7981		45.972	19.279	1	325440			83088	18889	57896	57990	92133	92133					0.040002091550604746
VERPKSAI	8	Unmodified	_VERPKSAI_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.26910400390625	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.80469	1	3231	3231		58.782	5.4305	1	136700000	+		83089	20720	57897	57991	92134	92134					0.07029491134380805
VERRALHE	8	Unmodified	_VERRALHE_					0	0	0		ENSG00000178752|ENST00000546354|ERFE;ENST00000481917.5_1_2:239072313-239074302:+|nuORF	ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.32403564453125	2	505.280515	1008.54648	-0.14053	-7.1009E-05	3.5783	0.0018081	3.4378	0.001737	505.28229388494645	78.942	0.29315	78.75	78.506	78.799	-0.19211					10	6	2	0	0	0	0.027866	1	9749	9749		17.365	0	1	102600			83090	8835	57898	57992	92135	92135					0.04254510251848842
VERRGPHY	8	Unmodified	_VERRGPHY_					0	0	0			REV__ENST00000414276.6_1_1:150239820-150241394:-|nuORF	REV__ENST00000414276.6_1_1:150239820-150241394:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2929382324219	2	507.267407	1012.52026	3.2295	0.0016382	3.0892	0.0015671	6.3187	0.0032053	507.26882250547686	17.869	0.29243	17.869	17.746	18.038	0					8	5	2	0	0	0	0.027866	1	218	218		46.766	9.6073	1	27176	+		83091	32033	57899	57993	92136	92136					0.01450241080374326
VERRNNLL	8	Unmodified	_VERRNNLL_					0	0	0		ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7682189941406	2	507.296165	1012.57778	-0.84927	-0.00043083	-3.8918	-0.0019743	-4.7411	-0.0024051	507.79485746359535	60.806	0.22791	60.806	60.656	60.884	0					8	5	2	0	0	0	0.027866	1	7004	7004		66.429	0	1	42319			83092	10024;1976	57900	57994	92137	92137					0.07199083285945562
VERSPEGLE	9	Unmodified	_VERSPEGLE_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.27459716796875	2	508.256371	1014.49819	-0.025128	-1.2771E-05	1.3724	0.00069755	1.3473	0.00068478	508.7599001712248	100.97	0.10043	100.79	100.74	100.84	-0.17178					4	2	2	0	0	0	0.024427	1	12515	12515		26.693	3.6504	1	34321			83093	728	57901	57995	92138	92138					-0.008480281787001331
VERSRQGR	8	Unmodified	_VERSRQGR_					0	0	0		SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|21|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|20|2|sense	SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|21|2|sense	SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|21|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.3056335449219	2	494.275764	986.536974	0.7938	0.00039236	-2.5555	-0.0012631	-1.7617	-0.00087075	494.2730615958123	84.594	0.67542	84.436	84.063	84.738	-0.15869					23	15	2	0	0	0	0.027866	1	10281	10281		38.806	0	1	67153			83094	38003	57902	57996	92139	92139					0.04316741966340487
VERVKAVIE	9	Unmodified	_VERVKAVIE_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7833862304688	2	521.816399	1041.61824	0.30277	0.00015799	3.5762	0.0018661	3.879	0.0020241	521.8180965462368	70.287	1.0999	70.073	69.153	70.253	-0.21425					75	26	4	0	0	0	0.024374	1	8102	8102		32.812	0	1	2796000	+		83095	25018	57903	57997	92140	92140					0.09910004885728085
VERVSRLL	8	Unmodified	_VERVSRLL_					0	0	0			REV__TIMELESS|p.A622V|1|0.06|ENSG00000111602|chr12:56424765-56424765|G/A|missense_variant	REV__TIMELESS|p.A622V|1|0.06|ENSG00000111602|chr12:56424765-56424765|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3036193847656	2	486.303458	970.592364	-0.11046	-5.3718E-05	-0.62688	-0.00030485	-0.73734	-0.00035857	486.30316316197457	47.719	1.2822	47.443	47.044	48.326	-0.27598					88	34	4	0	0	0	0.87148	1	4684	4684		53.351	2.016	1	15986000	+		83096	37694	57904	57998	92141	92141					0.10589155434104214
VERWRRAN	8	Unmodified	_VERWRRAN_					0	0	0			REV__ENST00000261497.8_1_17:20922449-20924439:-|nuORF	REV__ENST00000261497.8_1_17:20922449-20924439:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2808227539062	2	543.799406	1085.58426	-0.96016	-0.00052213	3.9836	0.0021663	3.0234	0.0016441	544.3048548486369	62.393	0.43073	62.135	61.82	62.25	-0.25824					12	10	2	0	0	0	0.027866	1	7003	7003		12.959	1.4482	1	122920	+		83097	29626	57905	57999	92142	92142					0.04489021237327506
VERYMREF	8	Unmodified	_VERYMREF_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.286376953125	2	565.276583	1128.53861	-0.30716	-0.00017363	4.0516	0.0022903	3.7444	0.0021166	565.2789113552701	67.675	0.79284	67.386	67.108	67.901	-0.28835					34	19	2	0	0	0	0.027866	1	8016	8016		12.959	0	1	459250			83098	8838	57906	58000	92143	92143					-0.02051385059940003
VESEEVLGLL	10	Unmodified	_VESEEVLGLL_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.7665405273438	2	544.297704	1086.58086	-1.124	-0.0006118	1.5568	0.00084736	0.43278	0.00023556	544.2984389792264	46.618	0.61407	46.424	46.165	46.779	-0.19387					35	17	3	0	0	0	0.03519	1	4519	4519		35.618	1.4457	1	1336200	+		83099	25033	57907	58001	92144	92144					0.041028688294545645
VESELRSICT	10	Unmodified	_VESELRSICT_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ;ENST00000460093.1_1_2:9768976-9770356:-|nuORF	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.83056640625	2	568.784438	1135.55432	0.26311	0.00014965	0.99223	0.00056436	1.2553	0.00071401	568.7849434746881	90.195	0.74918	90.057	89.488	90.237	-0.13824					26	17	2	0	0	0	0.03519	1	11030	11030		30.318	4.7437	1	158920			83100	4779	57908	58002	92145	92145					-0.008031433335418114
VESESKKKI	9	Unmodified	_VESESKKKI_					0	0	0			REV__ENST00000534551.2_1_11:118947733-118948890:+|nuORF	REV__ENST00000534551.2_1_11:118947733-118948890:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.3082885742188	2	524.305864	1046.59717	0.14593	7.651E-05	2.0856	0.0010935	2.2315	0.00117	524.3069452935372	71.441	0.52877	71.452	71.05	71.579	0.010735					25	13	2	0	0	0	0.19099	1	8589	8589		90.37	1.7269	1	15074000	+		83101	25336	57909	58003	92146	92146					0.07573994786184812
VESFKAMW	8	Unmodified	_VESFKAMW_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2558288574219	2	499.244221	996.473888	-0.18971	-9.4712E-05	-0.90872	-0.00045367	-1.0984	-0.00054839	499.2435291788052	79.626	1.4148	79.645	79.11	80.525	0.018677					49	33	2	0	0	0	0.027866	1	9787	9787		25.45	0	1	222140			83102	1633	57910	58004	92147	92147					-0.024489598659329204
VESFKAMW	8	Unmodified	_VESFKAMW_					0	0	0		nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.244221	996.473888	-0.15949	-7.9626E-05	-2.1472	-0.001072	-2.3067	-0.0011516	499.2433239166629	79.685	0.54498	79.535	79.278	79.823	-0.15051	-0.11446	-0.00073027	NaN	25.45	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76966			83103	1633	57910	58004							-0.024489598659329204
VESFLKVAGM	10	Unmodified	_VESFLKVAGM_					0	0	0		ENSG00000170667|ENST00000465829|RASA4B	ENSG00000170667|ENST00000465829|RASA4B	ENSG00000170667|ENST00000465829|RASA4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.8097534179688	2	540.791535	1079.56852	-0.28262	-0.00015284	-1.3147	-0.00071098	-1.5973	-0.00086382	541.2925813498703	107.08	0.080673	106.92	106.88	106.96	-0.15772					4	2	2	0	0	0	0.03519	1	13291	13291		34.173	5.9183	1	38378			83104	8066	57911	58005	92148	92148					0.03191553885403664
VESIRREKTQ	10	Unmodified	_VESIRREKTQ_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.72198486328125	3	415.901843	1244.6837	0.88602	0.0003685	2.8401	0.0011812	3.7261	0.0015497	415.9028558184481	42.456	0.35755	42.456	42.322	42.679	0					14	9	2	0	0	0	0.03519	1	3908	3908		20.837	8.6305	1	92731			83105	5593	57912	58006	92149	92149					0.07114374340744689
VESISVKKP	9	Unmodified	_VESISVKKP_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;chr22:45345569-45353978|138|19.05|0.54|5.15|-|ENST00000404354|SMC1B,SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7742919921875	2	493.797675	985.580796	0.44498	0.00021973	-0.5502	-0.00027169	-0.10522	-5.1957E-05	493.7973189464462	49.607	0.55121	49.607	49.362	49.913	0					32	14	3	0	0	0	0.023454	1	5123	5123		93.195	34.966	1	789470			83106	386	57913	58007	92150	92150					0.08742913620096715
VESITGLVL	9	Unmodified	_VESITGLVL_					0	0	0			REV__ENST00000468556.1_1_10:49450143-49459678:-|nuORF	REV__ENST00000468556.1_1_10:49450143-49459678:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.7773742675781	2	465.778951	929.543348	-0.18378	-8.5601E-05	-3.5688	-0.0016623	-3.7526	-0.0017479	465.7770589296706	81.53	4.4485	81.399	79.15	83.599	-0.13075					270	106	3	0	0	0	0.70186	1	10013	10013		45.952	7.1458	1	1253000	+		83107	26457	57914	58008	92151	92151					0.07575822354476713
VESKVHVMP	9	Unmodified	_VESKVHVMP_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7328491210938	2	513.276052	1024.53755	0.5056	0.00025951	-3.4146	-0.0017526	-2.909	-0.0014931	513.2750723094558	59.742	0.72667	59.566	59.158	59.885	-0.1761					65	18	5	0	0	0	0.024323	1	6558	6558		20.947	0	1	354340	+		83108	20141	57915	58009	92152	92152					0.026264005711709615
VESKWISSSC	10	Unmodified	_VESKWISSSC_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2679443359375	2	563.265881	1124.51721	-0.24281	-0.00013676	3.6771	0.0020712	3.4343	0.0019344	563.2677150653773	23.556	1.4804	23.376	23.112	24.593	-0.17989					93	34	5	0	0	0	0.80817	1	978	978		60.118	0	1	7326800			83109	4620	57916	58010	92153	92153					-0.04006814879289777
VESLRKKR	8	Unmodified	_VESLRKKR_					0	0	0		nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	nc|ENSG00000125779|Q9BZ23-3|PANK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.2928161621094	2	508.322183	1014.62981	0.26116	0.00013275	2.7356	0.0013906	2.9968	0.0015233	508.323443212363	74.744	0.45839	74.485	74.244	74.702	-0.25887					17	10	2	0	0	0	0.027866	1	9088	9088		17.365	0	1	104250			83110	4139	57917	58011	92154	92154					0.1230824669970616
VESLRTLMQ	9	Unmodified	_VESLRTLMQ_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000536170.1_1_11:73054124-73064192:+|nuORF	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.8046264648438	2	538.792066	1075.56958	-0.24747	-0.00013333	-3.2709	-0.0017623	-3.5184	-0.0018957	538.790308098542	37.01	0.41784	36.947	36.709	37.127	-0.063385					17	10	2	0	0	0	0.024319	1	2993	2993		47.657	14.845	1	163480			83111	3030	57918	58012	92155	92155					0.03481768254300732
VESNVRTP	8	Unmodified	_VESNVRTP_					0	0	0		ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-8|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7853088378906	2	451.240524	900.466495	0.019881	8.971E-06	3.6145	0.001631	3.6344	0.00164	451.24114469978934	28.903	0.71328	28.984	28.699	29.412	0.080811					39	17	3	0	0	0	0.027866	1	1651	1651		71.296	10.324	1	324820			83112	2893	57919	58013	92156	92156					0.012280238579933211
VESNVRTP	8	Unmodified	_VESNVRTP_					0	0	0		ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-8|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	451.240524	900.466495	-0.35299	-0.00015928	4.7395	0.0021387	4.3865	0.0019794	451.24126577332675	29.146	0.41692	29.149	28.971	29.388	0.0031357	0.082447	0.00055102	NaN	71.296	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361660			83113	2893	57919	58013							0.012280238579933211
VESPIWNP	8	Unmodified	_VESPIWNP_					0	0	0			REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.3106994628906	2	471.239993	940.465432	0.33928	0.00015988	-4.3245	-0.0020379	-3.9853	-0.001878	471.2379996793525	34.274	0.93076	34.269	33.599	34.53	-0.0045624					24	23	2	0	0	0	0.027866	1	2530	2530		45.952	0	1	150540	+		83114	34666	57920	58014	92157	92157					-0.007181905109177933
VESPVQEGV	9	Unmodified	_VESPVQEGV_					0	0	0			REV__nc|ENSG00000204536|Q8TD31|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.2926330566406	2	472.24019	942.465826	-0.80438	-0.00037986	0.33976	0.00016045	-0.46462	-0.00021941	472.24021533529543	60.847	0.51413	60.67	60.483	60.997	-0.1761					19	12	2	0	0	0	0.024539	1	6805	6805		35.618	13.916	1	136480	+		83115	28615	57921	58015	92158	92158					-0.007708155816999351
VESPVQEGV	9	Unmodified	_VESPVQEGV_					0	0	0			REV__nc|ENSG00000204536|Q8TD31|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.24019	942.465826	-0.34225	-0.00016163	0.44535	0.00021031	0.1031	4.8689E-05	472.2402912922149	60.565	0.44349	60.565	60.401	60.845	0	-0.11766	-0.00044478	NaN	34.173	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129660	+		83116	28615	57921	58015							-0.007708155816999351
VESPVQEGV	9	Unmodified	_VESPVQEGV_					0	0	0			REV__nc|ENSG00000204536|Q8TD31|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.24019	942.465826	-0.22844	-0.00010788	0.05423	2.561E-05	-0.17421	-8.227E-05	472.24001804617916	60.894	0.44792	60.681	60.347	60.795	-0.21339	-0.0018034	-0.00081418	NaN	34.173	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101210	+		83117	28615	57921	58015							-0.007708155816999351
VESPVQEGV	9	Unmodified	_VESPVQEGV_					0	0	0			REV__nc|ENSG00000204536|Q8TD31|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.24019	942.465826	-0.018126	-8.5598E-06	-0.5787	-0.00027329	-0.59683	-0.00028185	472.2397248996571	60.92	0.42584	60.714	60.463	60.889	-0.20599	0.031482	-0.001412	NaN	34.173	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110420	+		83118	28615	57921	58015							-0.007708155816999351
VESPVQEGV	9	Unmodified	_VESPVQEGV_					0	0	0			REV__nc|ENSG00000204536|Q8TD31|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	472.24019	942.465826	-1.0301	-0.00048645	1.434	0.00067718	0.40387	0.00019072	472.2407626631169	61.036	0.42712	60.782	60.544	60.971	-0.25373	0.099979	0.00048895	NaN	34.173	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221370	+		83119	28615	57921	58015							-0.007708155816999351
VESQDNDQP	9	Unmodified	_VESQDNDQP_					0	0	0		nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;GIT2|p.S532Efs*58|1|0.05|ENSG00000139436|chr12:109947304-109947305|-/T|frameshift_variant;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;ENST00000547694.2_1_12:110390821-110397718:-|nuORF;ENST00000549999.1_1_12:110386630-110391055:-|nuORF	nc|ENSG00000139436|Q14161-10|GIT2	nc|ENSG00000139436|Q14161-10|GIT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8258666992188	2	516.217443	1030.42033	-0.54415	-0.0002809	-0.96562	-0.00049847	-1.5098	-0.00077937	516.2168268295496	56.788	0.27858	56.623	56.535	56.813	-0.16431					11	7	2	0	0	0	0.024457	1	6339	6339		37.159	8.0096	1	98753			83120	18329	57922	58016	92159	92159					-0.09366085834744808
VESSRHMLWG	10	Unmodified	_VESSRHMLWG_					0	0	0		ENST00000521731.1_1_8:28108019-28196754:-|nuORF	ENST00000521731.1_1_8:28108019-28196754:-|nuORF	ENST00000521731.1_1_8:28108019-28196754:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	600.3010864257812	2	601.292765	1200.57098	-1.3602	-0.00081788	-2.5377	-0.0015259	-3.8979	-0.0023438	601.2911752397387	61.018	0.56935	60.842	60.635	61.205	-0.1761					20	12	2	0	0	0	0.03519	1	6792	6792		21.96	0	1	533100			83121	16010	57923	58017	92160	92160					-0.021285976569515697
VETELQLTF	9	Unmodified	_VETELQLTF_					0	0	0		ENST00000527224.1_1_11:65837957-65984297:+|nuORF;ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1	ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENST00000527224.1_1_11:65837957-65984297:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	540.284597	1078.55464	-0.5815	-0.00031418	-2.3808	-0.0012863	-2.9623	-0.0016005	540.2830567671101	52.487	0.60543	52.579	52.445	53.05	0.091938					16	8	2	0	0	0	0.024457	1	5594	5594		29.15	0	1	638760			83122	8531	57924	58018	92161	92161					0.018505996579506245
VETEQRKNMRR	11	Unmodified	_VETEQRKNMRR_					0	0	0			REV__ENST00000558196.1_1_15:85235330-85259288:-|nuORF	REV__ENST00000558196.1_1_15:85235330-85259288:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.230224609375	3	482.924653	1445.75213	-0.61088	-0.00029501	0.27262	0.00013166	-0.33826	-0.00016335	483.25876748076064	28.571	0.47211	28.402	28.213	28.685	-0.16897					19	10	2	0	0	0	0.024809	1	1680	1680		17.167	0	1	111430	+		83123	35092	57925	58019	92162	92162					0.04708295648947569
VETFGTTSYYD	11	Unmodified	_VETFGTTSYYD_					0	0	0		ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3	ENSG00000183625|ENST00000395940|CCR3	ENSG00000183625|ENST00000395940|CCR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2618408203125	3	428.187314	1281.54011	-0.68094	-0.00029157	-4.0054	-0.001715	-4.6863	-0.0020066	428.5197477783701	89.875	0.12273	89.875	89.774	89.896	0					4	2	2	0	0	0	0.024792	1	11348	11348		24.232	2.5461	1	49575			83124	9252	57926	58020	92163	92163					-0.0893951728085085
VETFPKKI	8	Unmodified	_VETFPKKI_					0	0	0			REV__ENSG00000166123|ENST00000340124|GPT2	REV__ENSG00000166123|ENST00000340124|GPT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7312927246094	2	481.289485	960.564418	-0.39752	-0.00019132	-2.7835	-0.0013397	-3.181	-0.001531	481.28796785598956	31.016	0.90371	31.085	30.703	31.606	0.06896					39	21	3	0	0	0	0.027866	1	1993	1993		23.042	0	1	159900	+		83125	25971	57927	58021	92164	92164					0.08255832453994572
VETKKGLIVTR	11	Unmodified	_VETKKGLIVTR_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	622.896240234375	2	622.390262	1242.76597	-0.1391	-8.6575E-05	4.2105	0.0026206	4.0714	0.002534	622.392726665712	100.64	0.50755	100.64	100.35	100.86	0					27	11	3	0	0	0	1.0655	1	12884	12884		20.837	0.84038	1	933150	+		83126	27461	57928	58022	92165	92165					0.1542989641970962
VETKKGLIVTR	11	Unmodified	_VETKKGLIVTR_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	622.390262	1242.76597	-0.1391	-8.6575E-05	4.2105	0.0026206	4.0714	0.002534	622.392726665712	100.64	0.50755	100.64	100.35	100.86	0	-0.0020178	0.00020686	NaN	20.837	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	933150	+		83127	27461	57928	58022							0.1542989641970962
VETKKGLIVTR	11	Unmodified	_VETKKGLIVTR_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	622.390262	1242.76597	0.12038	7.4924E-05	3.9796	0.0024769	4.1	0.0025518	622.392820251768	100.62	0.52869	100.63	100.34	100.87	0.010117	-0.0052861	-8.0505E-05	NaN	20.837	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763890	+		83128	27461	57928	58022							0.1542989641970962
VETKKGLIVTR	11	Unmodified	_VETKKGLIVTR_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	622.390262	1242.76597	-0.28332	-0.00017633	4.5153	0.0028103	4.232	0.002634	622.3931070514229	100.66	0.50674	100.66	100.43	100.93	-0.0054398	0.01909	0.00058632	NaN	20.837	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575000	+		83129	27461	57928	58022							0.1542989641970962
VETKKGLIVTR	11	Unmodified	_VETKKGLIVTR_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	622.390262	1242.76597	0.8468	0.00052704	3.5722	0.0022233	4.419	0.0027503	622.3924985288094	100.77	0.43911	100.63	100.41	100.85	-0.13364	-0.005948	-0.00058765	NaN	20.837	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477490	+		83130	27461	57928	58022							0.1542989641970962
VETKKGLIVTR	11	Unmodified	_VETKKGLIVTR_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	622.390262	1242.76597	-0.50263	-0.00031283	4.6932	0.002921	4.1905	0.0026081	622.3933037088833	100.76	0.36621	100.63	100.44	100.81	-0.12504	-0.0062352	0.00080769	NaN	20.837	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254820	+		83131	27461	57928	58022							0.1542989641970962
VETKKGLIVTR	11	Unmodified	_VETKKGLIVTR_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	622.390262	1242.76597	0.1449	9.0185E-05	3.6525	0.0022733	3.7974	0.0023635	622.3924566218542	100.81	0.38126	100.64	100.46	100.84	-0.17178	0.00039766	-0.00048765	NaN	20.837	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347590	+		83132	27461	57928	58022							0.1542989641970962
VETLLDILI	9	Unmodified	_VETLLDILI_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	514.334228515625	2	514.815533	1027.61651	0.049567	2.5518E-05	4.1122	0.002117	4.1618	0.0021426	514.8175657286686	49.526	0.40598	49.526	49.362	49.768	0					14	10	2	0	0	0	0.022924	1	5152	5152		63.306	20.91	1	146350			83133	5686	57929	58023	92166	92166					0.10380951077104328
VETTARPK	8	Unmodified	_VETTARPK_					0	0	0			REV__ENSG00000124688|ENST00000372171|MAD2L1BP	REV__ENSG00000124688|ENST00000372171|MAD2L1BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7853088378906	2	451.258717	900.50288	0.046591	2.1025E-05	0.86231	0.00038913	0.9089	0.00041015	451.2593950981107	28.471	0.57756	28.552	28.329	28.907	0.080812					33	13	3	0	0	0	0.027866	1	1651	1651		44.117	0	1	222720	+		83134	22781	57930	58024	92167	92167					0.04864900754705559
VETTKEAGE	9	Unmodified	_VETTKEAGE_					0	0	0		ENSG00000075399|ENST00000389386|VPS9D1;nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	ENSG00000075399|ENST00000389386|VPS9D1	ENSG00000075399|ENST00000389386|VPS9D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.2375793457031	2	482.235104	962.455655	0.23089	0.00011134	4.07	0.0019627	4.3009	0.002074	482.23693779076655	69.785	1.0238	69.563	69.103	70.127	-0.22246					58	24	4	0	0	0	0.72494	1	8113	8113		44.377	0.26039	1	1999600			83135	1556	57931	58025	92168	92168					-0.02707423306947021
VETVRLGQ	8	Unmodified	_VETVRLGQ_					0	0	0			REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7843933105469	2	451.258717	900.50288	-0.33111	-0.00014942	-0.21564	-9.7311E-05	-0.54676	-0.00024673	451.25865033384076	28.827	0.58923	28.83	28.465	29.055	0.0031357					30	13	3	0	0	0	0.027866	1	1675	1675		74.255	0	1	175030	+		83136	29379	57932	58026	92169	92169					0.04864900754705559
VEVDGISLV	9	Unmodified	_VEVDGISLV_					0	0	0		nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7602233886719	2	465.760758	929.506963	0.34163	0.00015912	0.19961	9.2968E-05	0.54123	0.00025209	465.7605704864563	80.568	1.2728	80.362	79.886	81.158	-0.20633					57	30	3	0	0	0	0.33245	1	9666	9666		71.296	0	1	674130			83137	6681	57933	58027	92170	92170					0.03938945457775844
VEVDIHCCRGR	11	Unmodified	_VEVDIHCCRGR_					0	0	0		ENSG00000040199|ENST00000568954|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	ENSG00000040199|ENST00000568954|PHLPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.22686767578125	3	429.541263	1285.60196	-0.38708	-0.00016627	2.4591	0.0010563	2.0721	0.00089003	429.54225067277645	44.988	0.62135	44.888	44.633	45.254	-0.099445					28	16	2	0	0	0	0.024735	1	4254	4254		27.644	2.5179	1	847660			83138	1065	57934	58028	92171	92171					-0.02941767614379387
VEVDPMLTL	9	Unmodified	_VEVDPMLTL_					0	0	0		nc|ENSG00000105290|P51693|APLP1;ENSG00000105290|ENST00000221891|APLP1	nc|ENSG00000105290|P51693|APLP1	nc|ENSG00000105290|P51693|APLP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2414855957031	2	508.770268	1015.52598	-0.20788	-0.00010576	-0.61044	-0.00031058	-0.81832	-0.00041634	508.77069125666264	36.448	0.43394	36.243	36.091	36.525	-0.20518					15	10	2	0	0	0	0.024427	1	2882	2882		51.335	5.3835	1	83833			83139	2657	57935	58029	92172	92172					0.018841587571614582
VEVEFRNLI	9	Unmodified	_VEVEFRNLI_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.815185546875	2	559.813856	1117.61316	-0.54513	-0.00030517	3.5584	0.0019921	3.0133	0.0016869	559.8157653628313	80.904	2.796	80.904	79.911	82.707	0					244	67	6	0	0	0	0.35646	2	10125	10125;10161		68.787	5.4806	1	11331000	+		83140	22782	57936	58030	92173;92174	92173					0.05905701023107213
VEVEFRNLI	9	Unmodified	_VEVEFRNLI_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8155517578125	2	559.813856	1117.61316	-0.92953	-0.00052036	3.9468	0.0022095	3.0173	0.0016891	559.8160033081188	81.045	2.7136	80.914	79.904	82.618	-0.13075					247	65	6	0	0	0	0.50848	1	10170	10170		58.782	0.97068	1	11139000	+		83141	22782	57936	58030	92175	92175					0.05905701023107213
VEVEFRNLI	9	Unmodified	_VEVEFRNLI_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.815185546875	2	559.813856	1117.61316	0.050072	2.8031E-05	2.9997	0.0016793	3.0498	0.0017073	559.8155046600118	80.867	2.2167	80.629	80.287	82.504	-0.23784					212	52	6	0	0	0	0.31037	2	9783	9759;9783		74.255	2.9593	1	31546000	+		83142	22782	57936	58030	92176;92177	92177					0.05905701023107213
VEVFGKLKD	9	Unmodified	_VEVFGKLKD_					0	0	0		ENST00000490165.5_1_X:152728086-152735946:-|nuORF;ENST00000464993.1_1_X:152722593-152735946:-|nuORF;nc|ENSG00000213397|Q99871-3|HAUS7;ENSG00000213397|ENST00000370211|HAUS7;nc|ENSG00000213397|Q99871-2|HAUS7	ENST00000490165.5_1_X:152728086-152735946:-|nuORF	ENST00000490165.5_1_X:152728086-152735946:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8132934570312	2	517.797675	1033.5808	-1.0329	-0.00053485	-0.043044	-2.2288E-05	-1.076	-0.00055713	517.7975611531356	65.134	0.92668	65.134	64.873	65.799	0					48	25	3	0	0	0	0.024456	1	7692	7692		28.081	7.1346	1	2388400			83143	10503	57937	58031	92178	92178					0.06534913620112093
VEVGQLEP	8	Unmodified	_VEVGQLEP_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7786865234375	2	435.732	869.449448	0.24825	0.00010817	3.5781	0.0015591	3.8264	0.0016673	435.7326126720531	36.484	0.55565	36.267	36.015	36.57	-0.21661					24	13	3	0	0	0	0.027866	1	2871	2871		16.473	0	1	328500	+		83144	20800	57938	58032	92179	92179					0.009501032521939123
VEVKKRRHRLK	11	Unmodified	_VEVKKRRHRLK_					0	0	0		ENST00000427755.2_1_11:33037501-33047701:+|nuORF;ENST00000532078.1_1_11:33037501-33049388:+|nuORF;nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7	ENST00000427755.2_1_11:33037501-33047701:+|nuORF	ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.7585144042969	3	483.647671	1447.92118	-0.88348	-0.00042729	-1.8089	-0.00087487	-2.6924	-0.0013022	483.64666777790575	48.579	1.4719	48.303	47.966	49.438	-0.27598					147	39	5	0	0	0	0.02483	1	4993	4993		10.998	0.8943	1	3742500			83145	3880	57939	58033	92180	92180					0.2151398506462101
VEVLESIYL	9	Unmodified	_VEVLESIYL_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.79736328125	2	532.79734	1063.58013	-0.41765	-0.00022252	0.63832	0.00034009	0.22066	0.00011757	532.7973647286237	100.63	1.3968	100.63	100.07	101.46	0					58	32	3	0	0	0	0.36105	1	12889	12889		68.485	8.1907	1	1217100			83146	7084	57940	58034	92181	92181					0.05088074180366675
VEVLESIYL	9	Unmodified	_VEVLESIYL_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7972412109375	2	532.79734	1063.58013	-0.045357	-2.4166E-05	0.045125	2.4042E-05	-0.00023249	-1.2387E-07	532.797169869545	100.63	0.68692	100.62	100.25	100.93	-0.0054474					36	16	3	0	0	0	0.52323	2	12806	12806;12829		57.811	3.0466	1	1041100			83147	7084	57940	58034	92182;92183	92182					0.05088074180366675
VEVLWSLL	8	Unmodified	_VEVLWSLL_					0	0	0			REV__ENST00000373699.5_1_6:36839520-36839613:-|nuORF	REV__ENST00000373699.5_1_6:36839520-36839613:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7843322753906	2	479.784036	957.553519	1.0358	0.00049695	-0.81309	-0.00039011	0.22269	0.00010684	479.7834953911984	96.749	1.2415	96.749	96.44	97.682	-3.0518E-05					79	27	5	0	0	0	0.52467	1	12256	12256		83.287	3.348	1	2432500	+		83148	31269	57941	58035	92184	92184					0.07304430079727808
VEVPKEEPQI	10	Unmodified	_VEVPKEEPQI_					0	0	0			REV__ENSG00000133104|ENST00000438666|SPART	REV__ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.3189697265625	2	584.316428	1166.6183	-0.75014	-0.00043832	4.2572	0.0024876	3.5071	0.0020492	584.318794468666	49.347	0.9083	49.347	49.005	49.913	0					60	24	4	0	0	0	0.52143	2	5109	5087;5109		85.862	20.396	1	3939100	+		83149	23348	57942	58036	92185;92186	92186					0.04165960095042465
VEVPKVIK	8	Unmodified	_VEVPKVIK_					0	0	0			REV__ENST00000454858.1_1_3:195281775-195281898:+|nuORF	REV__ENST00000454858.1_1_3:195281775-195281898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.24627685546875	2	456.299853	910.585153	0.029548	1.3483E-05	2.9395	0.0013413	2.9691	0.0013548	456.30100948781103	41.895	1.4557	41.772	41.227	42.683	-0.12299					72	38	3	0	0	0	0.027866	1	3751	3751		24.203	7.4978	1	414050	+		83150	32772	57943	58037	92187	92187					0.1262842283366581
VEVPKVIK	8	Unmodified	_VEVPKVIK_					0	0	0			REV__ENST00000454858.1_1_3:195281775-195281898:+|nuORF	REV__ENST00000454858.1_1_3:195281775-195281898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.24609375	2	456.299853	910.585153	-0.45688	-0.00020847	3.2268	0.0014724	2.7699	0.0012639	456.3012009059836	42.139	1.4534	41.907	41.469	42.923	-0.23186					79	38	3	0	0	0	0.027866	1	3778	3778		33.516	3.0119	1	477380	+		83151	32772	57943	58037	92188	92188					0.1262842283366581
VEVPVLKK	8	Unmodified	_VEVPVLKK_					0	0	0		ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;nc|ENSG00000040275|Q96EA4-2|SPDL1	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	ENST00000507232.5_1_5:169018105-169028825:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.7666320800781	2	456.299853	910.585153	0.31991	0.00014597	2.1851	0.00099706	2.505	0.001143	456.3007655467536	39.08	0.89965	39.08	38.761	39.661	0					38	25	2	0	0	0	0.027866	1	3351	3351		11.511	0	1	252030			83152	15756	57944	58038	92189	92189					0.1262842283365444
VEVQKVYEL	9	Unmodified	_VEVQKVYEL_					0	0	0		ENSG00000131381|ENST00000253699|RBSN	ENSG00000131381|ENST00000253699|RBSN	ENSG00000131381|ENST00000253699|RBSN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	554.7666625976562	2	553.808239	1105.60193	-1.0877	-0.00060237	0.33173	0.00018372	-0.75596	-0.00041866	553.8082392159822	53.334	0.69141	53.187	52.948	53.639	-0.14723					53	18	4	0	0	0	0.024313	1	5746	5746		42.864	0	1	2629800			83153	4517	57945	58039	92190	92190					0.05334878928965736
VEVRKDIDG	9	Unmodified	_VEVRKDIDG_					0	0	0			REV__nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	REV__nc|ENSG00000137449|Q7Z5Q1-8|CPEB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3082275390625	2	515.780013	1029.54547	0.59088	0.00030477	3.325	0.001715	3.9159	0.0020197	515.7817181736958	87.238	0.71426	87.101	86.802	87.516	-0.13613					30	16	3	0	0	0	0.024294	1	10601	10601		55.504	2.1528	1	237070	+		83154	23753	57946	58040	92191	92191					0.03188251092274186
VEVTYDDM	8	Unmodified	_VEVTYDDM_					0	0	0		FLNB|p.V1311M|1|0.12|ENSG00000136068|chr3:58125613-58125613|G/A|missense_variant	FLNB|p.V1311M|1|0.12|ENSG00000136068|chr3:58125613-58125613|G/A|missense_variant	FLNB|p.V1311M|1|0.12|ENSG00000136068|chr3:58125613-58125613|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.28125	2	486.204958	970.395363	-0.31801	-0.00015462	-1.5164	-0.00073729	-1.8344	-0.00089191	486.20583681614727	89.481	0.37672	89.481	89.27	89.647	0					11	8	2	0	0	0	0.027866	1	11300	11300		42.474	0	1	30368			83155	17653	57947	58041	92192	92192					-0.09101856961683552
VEVVLWKTY	9	Unmodified	_VEVVLWKTY_					0	0	0		ENST00000525444.1_1_11:12281266-12284064:+|nuORF	ENST00000525444.1_1_11:12281266-12284064:+|nuORF	ENST00000525444.1_1_11:12281266-12284064:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.853271484375	2	568.82115	1135.62775	-0.77815	-0.00044263	-4.1817	-0.0023786	-4.9598	-0.0028213	569.3188781741655	101.65	0.31135	101.65	101.42	101.73	0					10	6	2	0	0	0	0.024506	1	12999	12999		10.866	0	1	59167			83156	16095	57948	58042	92193	92193					0.06535773171253823
VEVYLLDT	8	Unmodified	_VEVYLLDT_					0	0	0		ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000169174|Q8NBP7-2|PCSK9;ENST00000490692.1_1_1:55517886-55523720:+|nuORF	ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.25408935546875	2	476.255308	950.496064	0.21387	0.00010185	-2.3165	-0.0011033	-2.1027	-0.0010014	476.2536982686061	22.407	0.89087	22.205	21.903	22.793	-0.20199					77	18	8	0	0	0	0.96719	1	772	772		42.474	0.078325	1	1288400			83157	7909	57949	58043	92194	92194					0.01883543083465611
VEVYRDIILE	10	Unmodified	_VEVYRDIILE_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	416.9017333984375	3	416.899328	1247.67615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.605	1	16.662	16.162	17.162	0.057352								0	0	0	0.77833	1	77	77		15.333	2.5214	1				83158	15010	57950	58044	92195	92195					0.062222220205057965
VEWFSLHDLT	10	Unmodified	_VEWFSLHDLT_					0	0	0			REV__ENSG00000189050|ENST00000305783|RNFT1	REV__ENSG00000189050|ENST00000305783|RNFT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	622.866455078125	2	623.808771	1245.60299	0.41895	0.00026134	-0.58779	-0.00036667	-0.16884	-0.00010533	623.808342640375	74.971	0.84618	74.712	74.368	75.214	-0.25887					50	20	3	0	0	0	0.03519	1	9127	9127		10.866	0	1	567450	+		83159	28090	57951	58045	92196	92196					-0.009989067021479059
VEWGWPAL	8	Unmodified	_VEWGWPAL_					0	0	0			REV__ENST00000266058.8_1_10:98758565-98758625:-|nuORF	REV__ENST00000266058.8_1_10:98758565-98758625:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	479.245078	956.475603	1.3439	0.00064406	4.1077	0.0019686	5.4516	0.0026126	479.2469266629918	51.302	0.61499	51.19	50.896	51.511	-0.11163					35	15	3	0	0	0	0.61897	1	5270	5270		74.517	3.2209	1	1575800	+		83160	29756	57952	58046	92197	92197					-0.004375827856847536
VEWKGQPIAK	10	Unmodified	_VEWKGQPIAK_					0	0	0			REV__ENST00000270357.9_2_2:241517773-241518097:+|nuORF	REV__ENST00000270357.9_2_2:241517773-241518097:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.3390502929688	2	578.329673	1154.64479	0.095313	5.5122E-05	3.5771	0.0020688	3.6725	0.0021239	578.3314533860063	105.13	0.41925	105.01	104.77	105.19	-0.12444					25	12	3	0	0	0	1.0393	1	13095	13095		40.778	0.20554	1	174520	+		83161	29798	57953	58047	92198	92198					0.07365693777023807
VEWLQIKD	8	Unmodified	_VEWLQIKD_					0	0	0		ENSG00000155115|ENST00000329970|GTF3C6;GTF3C6|p.P198Tfs*3|1|0.32|ENSG00000155115|chr6:110967737-110967738|-/T|frameshift_variant	ENSG00000155115|ENST00000329970|GTF3C6	ENSG00000155115|ENST00000329970|GTF3C6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.80224609375	2	515.782025	1029.5495	0.33236	0.00017143	0.23778	0.00012264	0.57014	0.00029407	515.7817322599184	69.357	0.15733	69.064	68.933	69.09	-0.29292					5	3	2	0	0	0	0.027866	1	8295	8295		51.335	3.6781	1	100820			83162	6456	57954	58048	92199	92199					0.035903405860153725
VEWPEALG	8	Unmodified	_VEWPEALG_					0	0	0			REV__ENST00000490993.5_1_3:132435693-132435738:-|nuORF	REV__ENST00000490993.5_1_3:132435693-132435738:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2873229980469	2	450.726718	899.438883	-0.78966	-0.00035592	-3.4789	-0.001568	-4.2686	-0.001924	450.725287292977	37.179	0.38786	36.96	36.726	37.114	-0.2195					15	9	2	0	0	0	0.027866	1	2957	2957		42.474	14.22	1	75350	+		83163	33716	57955	58049	92200	92200					-0.014858794022416077
VEWRRIGWVL	10	Unmodified	_VEWRRIGWVL_					0	0	0			REV__ENST00000226091.2_1_17:7613862-7613994:+|nuORF	REV__ENST00000226091.2_1_17:7613862-7613994:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	438.7294006347656	3	438.587418	1312.74043	-0.15079	-6.6134E-05	3.9932	0.0017514	3.8424	0.0016852	438.9233806800749	35.121	0.33136	35.165	35.05	35.381	0.04406					15	8	2	0	0	0	0.03519	1	2629	2629		22.58	6.659	1	106470	+		83164	29382	57956	58050	92201	92201					0.09656466687943066
VEWVSLVKE	9	Unmodified	_VEWVSLVKE_					0	0	0			REV__ENST00000571392.1_1_16:72050816-72057384:+|nuORF	REV__ENST00000571392.1_1_16:72050816-72057384:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.8038330078125	2	544.802957	1087.59136	-0.96087	-0.00052349	-3.5855	-0.0019534	-4.5464	-0.0024769	544.8010530365178	45.34	1.5115	45.129	44.637	46.148	-0.21109					95	41	3	0	0	0	0.6504	1	4241	4241		49.442	3.4693	1	34916000	+		83165	35403	57957	58051	92202	92202					0.05106896274537576
VEYDFHFSGSP	11	Unmodified	_VEYDFHFSGSP_					0	0	0			REV__nc|ENSG00000047648|O43182-3|ARHGAP6	REV__nc|ENSG00000047648|O43182-3|ARHGAP6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.7846984863281	3	428.855899	1283.54587	-0.24118	-0.00010343	-0.36272	-0.00015555	-0.6039	-0.00025898	428.8547968178049	25.865	0.29511	25.629	25.508	25.803	-0.23603					8	6	2	0	0	0	0.024801	1	1294	1294		12.957	10.106	1	36833	+		83166	36450	57958	58052	92203	92203					-0.0845637397851533
VEYDFHFSGSP	11	Unmodified	_VEYDFHFSGSP_					0	0	0			REV__nc|ENSG00000047648|O43182-3|ARHGAP6	REV__nc|ENSG00000047648|O43182-3|ARHGAP6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	428.855899	1283.54587	0.12281	5.267E-05	3.0966	0.001328	3.2195	0.0013807	428.8574357681142	25.48	0.29416	25.31	25.205	25.499	-0.17078	-0.15946	0.0022754	NaN	5.4129	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35390	+		83167	36450	57958	58052							-0.0845637397851533
VEYLFLII	8	Unmodified	_VEYLFLII_					0	0	0		nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	nc|ENSG00000151067|Q13936-17|CACNA1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.32379150390625	2	505.302062	1008.58957	0.12068	6.0981E-05	2.64	0.001334	2.7606	0.001395	505.30230489925225	79.141	0.57925	78.918	78.744	79.324	-0.22306					21	13	3	0	0	0	0.027866	1	9510	9510		52.299	9.8247	1	271470			83168	6175	57959	58053	92204	92204					0.08561887256576028
VFAALFQAGV	10	Unmodified	_VFAALFQAGV_					0	0	0			REV__AQP9|p.G112A|1|0.22|ENSG00000103569|chr15:58173164-58173164|G/C|missense_variant	REV__AQP9|p.G112A|1|0.22|ENSG00000103569|chr15:58173164-58173164|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.83721923828125	2	511.78711	1021.55967	-0.42912	-0.00021962	-3.3225	-0.0017004	-3.7517	-0.0019201	511.7851725900997	45.953	0.78551	46.005	45.758	46.544	0.051395					31	22	2	0	0	0	0.03519	1	4442	4442		38.806	4.6336	1	328030	+		83169	19157	57960	58054	92205	92205					0.0497494831122367
VFADFLHFT	9	Unmodified	_VFADFLHFT_					0	0	0			REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.29541015625	2	548.776742	1095.53893	-0.69964	-0.00038395	3.563	0.0019553	2.8634	0.0015714	548.7786541381638	20.004	0.39409	20.004	19.831	20.225	0					13	7	2	0	0	0	0.024487	1	493	493		31.955	8.9124	1	63935	+		83170	20061	57961	58055	92206	92206					-0.005016420684341938
VFAEFLNSK	9	Unmodified	_VFAEFLNSK_					0	0	0			REV__ENSG00000169752|ENST00000394907|NRG4	REV__ENSG00000169752|ENST00000394907|NRG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.7642211914062	2	527.782025	1053.5495	-0.41854	-0.0002209	0.044721	2.3603E-05	-0.37382	-0.0001973	527.7819561451197	62.401	0.15419	62.18	62.045	62.199	-0.22097					6	3	2	0	0	0	0.024495	1	7007	7007		19.997	0	1	86202	+		83171	26397	57962	58056	92207	92207					0.024863405860060084
VFAGMPWAL	9	Unmodified	_VFAGMPWAL_					0	0	0		ENST00000424529.6_1_3:11610113-11610296:-|nuORF	ENST00000424529.6_1_3:11610113-11610296:-|nuORF	ENST00000424529.6_1_3:11610113-11610296:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.76611328125	2	496.257131	990.499709	-1.0529	-0.00052252	-3.6376	-0.0018052	-4.6905	-0.0023277	496.25510874346577	55.828	0.66365	55.671	55.348	56.011	-0.15656					30	17	2	0	0	0	0.024389	1	6068	6068		39.021	3.8208	1	523510			83172	14047	57963	58057	92208	92208					0.004079343763464749
VFAGSWLVY	9	Unmodified	_VFAGSWLVY_					0	0	0		ENSG00000165716|ENST00000371692|DIPK1B	ENSG00000165716|ENST00000371692|DIPK1B	ENSG00000165716|ENST00000371692|DIPK1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.266357421875	2	521.273835	1040.53312	-0.093343	-4.8657E-05	-3.6372	-0.001896	-3.7305	-0.0019446	521.2718063503462	50.552	1.0083	50.44	50.121	51.129	-0.11163					54	26	3	0	0	0	0.33184	1	5148	5148		71.378	5.9125	1	2085300			83173	7458	57964	58058	92209	92209					0.014472594198878141
VFAILSAKNL	10	Unmodified	_VFAILSAKNL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	537.77587890625	2	538.329142	1074.64373	-1.2286	-0.00066138	-0.35775	-0.00019259	-1.5863	-0.00085396	538.3281368075245	79.33	0.74887	79.158	78.819	79.568	-0.17226					31	17	3	0	0	0	0.03519	1	9819	9819		54.776	15.97	1	176810			83174	3841	57965	58059	92210	92210					0.10939479408125408
VFAILSAKNL	10	Unmodified	_VFAILSAKNL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7759399414062	2	538.329142	1074.64373	-0.66843	-0.00035983	0.16693	8.9863E-05	-0.5015	-0.00026997	538.3292700481131	79.179	0.6967	79.198	78.903	79.6	0.018669					24	16	3	0	0	0	0.03519	1	9755	9755		54.776	3.4409	1	169640			83175	3841	57965	58059	92211	92211					0.10939479408125408
VFAKRKFMA	9	Unmodified	_VFAKRKFMA_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000025008	REV__CON__ENSEMBL:ENSBTAP00000025008	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.31787109375	2	549.318054	1096.62156	0.4694	0.00025785	-0.69	-0.00037903	-0.2206	-0.00012118	549.3175615102906	99.732	0.62275	99.597	99.249	99.871	-0.13526					38	14	4	0	0	0	0.88411	1	12349	12349		33.516	3.0119	1	405160	+	+	83176	19527	57966	58060	92212	92212					0.07710976458724872
VFAKRKFMA	9	Unmodified	_VFAKRKFMA_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000025008	REV__CON__ENSEMBL:ENSBTAP00000025008	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.3181762695312	2	549.318054	1096.62156	0.75373	0.00041404	-1.0333	-0.0005676	-0.27955	-0.00015356	549.3174448773781	99.74	0.56215	99.616	99.234	99.796	-0.12458					46	14	4	0	0	0	0.90698	1	12360	12360		31.955	6.3808	1	437000	+	+	83177	19527	57966	58060	92213	92213					0.07710976458724872
VFALNLKPN	9	Unmodified	_VFALNLKPN_					0	0	0			REV__ENSG00000120756|ENST00000457734|PLS1	REV__ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3023376464844	2	508.300384	1014.58622	-0.35052	-0.00017817	3.5065	0.0017824	3.156	0.0016042	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.31247	1	6182	6182		73.975	2.0973	1	8370900	+		83178	22559	57967	58061	92214	92214					0.07950637202554844
VFALPRRG	8	Unmodified	_VFALPRRG_					0	0	0			REV__ENST00000568996.1_1_1:25573505-25664619:-|nuORF	REV__ENST00000568996.1_1_1:25573505-25664619:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2678527832031	2	458.279786	914.54502	0.10166	4.659E-05	-1.4749	-0.00067589	-1.3732	-0.0006293	458.2791011160205	75.062	0.89417	74.803	74.535	75.429	-0.25887					34	22	2	0	0	0	0.027866	1	9175	9175		20.482	0	1	1362600	+		83179	32712	57968	58062	92215	92215					0.08432920953760004
VFARPVLDN	9	Unmodified	_VFARPVLDN_					0	0	0			REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	REV__nc|ENSG00000163803|Q6P1J6-3|PLB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8087768554688	2	515.787641	1029.56073	0.059811	3.085E-05	-1.1785	-0.00060788	-1.1187	-0.00057703	516.2878588105161	67.999	0.62929	67.711	67.388	68.017	-0.28834					36	15	3	0	0	0	0.023417	1	8063	8063		68.787	6.6794	1	751590	+		83180	36856	57969	58063	92216	92216					0.047131626801501625
VFARSPSKP	9	Unmodified	_VFARSPSKP_					0	0	0		ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	ENSG00000088179|ENST00000263708|PTPN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.78521728515625	2	494.782359	987.550165	0.23967	0.00011858	-3.2065	-0.0015865	-2.9668	-0.0014679	494.78077282274	25.232	0.49762	25.313	24.961	25.459	0.08009					23	11	3	0	0	0	0.024405	1	1146	1146		20.947	0	1	890500			83181	1861	57970	58064	92217	92217					0.05589180025708629
VFASEGKYRA	10	Unmodified	_VFASEGKYRA_					0	0	0		ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7	ENSG00000091127|ENST00000469408|PUS7	ENSG00000091127|ENST00000469408|PUS7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2957153320312	2	564.29583	1126.57711	-0.17543	-9.8996E-05	0.15708	8.8637E-05	-0.018356	-1.0358E-05	564.2957824766013	40.914	1.0308	40.686	40.403	41.434	-0.2278					57	26	4	0	0	0	0.48123	1	3570	3570		90.37	10.657	1	1646100			83182	1951	57971	58065	92218	92218					0.018882438462242135
VFAVGIVGNL	10	Unmodified	_VFAVGIVGNL_					0	0	0		ENSG00000170075|ENST00000367282|GPR37L1;GPR37L1|p.S150L|1|0.42|ENSG00000170075|chr1:202123412-202123412|C/T|missense_variant	ENSG00000170075|ENST00000367282|GPR37L1	ENSG00000170075|ENST00000367282|GPR37L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7757568359375	2	494.794935	987.575317	-0.55237	-0.00027331	4.1724	0.0020645	3.6201	0.0017912	494.79671360557427	60.912	1.0982	60.699	59.962	61.06	-0.2134					49	28	3	0	0	0	0.03519	1	6899	6899		42.396	1.618	1	996300			83183	8007	57972	58066	92219	92219					0.08103234828286077
VFCFCFII	8	Unmodified	_VFCFCFII_					0	0	0			REV__ENSG00000139679|ENST00000620633|LPAR6	REV__ENSG00000139679|ENST00000620633|LPAR6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.30657958984375	2	496.242635	990.470717	-0.071128	-3.5297E-05	0.49265	0.00024447	0.42152	0.00020918	496.2419161022271	65.274	0.85134	65.274	64.909	65.76	0					40	23	2	0	0	0	0.027866	1	7665	7665		24.504	0	1	1295500	+		83184	23959	57973	58067	92220	92220					-0.024899262443000225
VFCHAFPLL	9	Unmodified	_VFCHAFPLL_					0	0	0			REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7988891601562	2	523.778231	1045.54191	0.14593	7.6433E-05	3.6505	0.0019121	3.7965	0.0019885	523.7796403468002	71.544	0.69595	71.282	70.824	71.52	-0.26199					26	16	2	0	0	0	0.024389	1	8335	8335		21.702	0	1	302610	+		83185	33231	57974	58068	92221	92221					0.02095909784725336
VFCHAFPLL	9	Unmodified	_VFCHAFPLL_					0	0	0			REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7902221679688	2	523.778231	1045.54191	0.47649	0.00024957	1.3253	0.00069417	1.8018	0.00094374	523.779425566675	84.118	0.68886	83.98	83.801	84.49	-0.13789					20	15	2	0	0	0	0.024475	1	10152	10152		29.842	1.9593	1	55903	+		83186	33231	57974	58068	92222	92222					0.02095909784725336
VFCLRLRA	8	Unmodified	_VFCLRLRA_					0	0	0		ENST00000229416.10_1_6:53409297-53409843:-|nuORF	ENST00000229416.10_1_6:53409297-53409843:-|nuORF	ENST00000229416.10_1_6:53409297-53409843:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2584228515625	2	489.289297	976.564041	-0.30087	-0.00014721	-3.6011	-0.001762	-3.902	-0.0019092	489.28782549772535	75.138	0.23841	75.148	74.973	75.211	0.010376					8	5	2	0	0	0	0.027866	1	9144	9144		28.254	13.59	1	49078			83187	11230	57975	58069	92223	92223					0.07482134253143613
VFCLTLHTF	9	Unmodified	_VFCLTLHTF_					0	0	0			REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8048095703125	2	540.78097	1079.54739	-0.85632	-0.00046308	-1.983	-0.0010724	-2.8393	-0.0015354	540.7791480132128	53.053	0.48917	52.906	52.607	53.096	-0.14723					16	12	2	0	0	0	0.024294	1	5675	5675		37.159	0.13063	1	458700	+		83188	31806	57976	58070	92224	92224					0.010795885765219282
VFCLTLHTF	9	Unmodified	_VFCLTLHTF_					0	0	0			REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.78097	1079.54739	-0.1115	-6.0299E-05	-2.4935	-0.0013484	-2.605	-0.0014087	540.7800030086888	52.981	0.31374	52.854	52.713	53.027	-0.12705	-0.042365	1.3602E-05	NaN	37.159	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408350	+		83189	31806	57976	58070							0.010795885765219282
VFCLTLHTF	9	Unmodified	_VFCLTLHTF_					0	0	0			REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.78097	1079.54739	0.10845	5.8648E-05	-2.3258	-0.0012578	-2.2174	-0.0011991	540.7801150440606	53.16	0.27221	52.901	52.803	53.075	-0.25838	0.0050627	0.00019495	NaN	37.159	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649810	+		83190	31806	57976	58070							0.010795885765219282
VFCLTLHTF	9	Unmodified	_VFCLTLHTF_					0	0	0			REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	REV__ENST00000398637.9_1_12:46582428-46582674:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.78097	1079.54739	-0.82908	-0.00044835	-2.8591	-0.0015461	-3.6881	-0.0019945	540.7798263381654	53.031	0.30315	52.842	52.754	53.057	-0.18982	-0.054898	-0.00038176	NaN	37.159	17	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	551570	+		83191	31806	57976	58070							0.010795885765219282
VFDHLAVFL	9	Unmodified	_VFDHLAVFL_					0	0	0			REV__ABL1|p.Y70H|1|0.27|ENSG00000097007|chr9:130854192-130854192|T/C|missense_variant	REV__ABL1|p.Y70H|1|0.27|ENSG00000097007|chr9:130854192-130854192|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.79736328125	2	530.794935	1059.57532	-0.34557	-0.00018342	0.3316	0.00017601	-0.013967	-7.4137E-06	530.7949316671137	95.904	1.5554	95.747	95.4	96.955	-0.15646					84	35	3	0	0	0	0.78069	1	11828	11828		40.573	0	1	903670	+		83192	19049	57977	58071	92225	92225					0.04791234828257984
VFDIIYPYA	9	Unmodified	_VFDIIYPYA_					0	0	0			REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B	REV__nc|ENSG00000170456|Q6ZUT9-3|DENND5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.268798828125	2	550.786776	1099.559	-1.2811	-0.0007056	2.667	0.0014689	1.3859	0.00076333	550.7904581250593	65.184	0.68961	64.981	64.617	65.307	-0.20254					37	16	4	0	0	0	0.024412	1	7444	7444		40.573	12.318	1	576950	+		83193	36920	57978	58072	92226	92226					0.013201088715277365
VFDNMGAYTV	10	Oxidation (M)	_VFDNM(Oxidation (M))GAYTV_		VFDNM(1)GAYTV		VFDNM(70)GAYTV	0	0	1		ENST00000478204.5_1_1:33557816-33585780:+|nuORF;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	ENST00000478204.5_1_1:33557816-33585780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.7547607421875	2	566.752607	1131.49066	0.22604	0.00012811	3.1605	0.0017912	3.3865	0.0019193	566.7542263813289	50.535	0.66591	50.354	50.094	50.76	-0.18071					43	17	3	0	0	0	0.66532	1	5130	5130		69.628	6.3214	1	3759800			83194	15135	57979	58073	92227	92227		516			-0.06982503770655057
VFDRIPLP	8	Unmodified	_VFDRIPLP_					0	0	0		ENST00000435125.1_1_2:203385410-203385494:+|nuORF	ENST00000435125.1_1_2:203385410-203385494:+|nuORF	ENST00000435125.1_1_2:203385410-203385494:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2901306152344	2	478.781828	955.549102	0.20459	9.7952E-05	-3.9036	-0.001869	-3.699	-0.001771	478.7794704562054	25.975	0.74831	26.055	25.54	26.288	0.08009					32	17	4	0	0	0	0.027866	1	1206	1206		50.025	16.509	1	940410			83195	14258	57980	58074	92228	92228					0.06954965656814238
VFDVLGHKA	9	Unmodified	_VFDVLGHKA_					0	0	0		ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.27838134765625	2	493.276909	984.539266	0.73489	0.0003625	2.3259	0.0011473	3.0608	0.0015098	493.2779568879019	20.572	1.2754	20.376	20.187	21.462	-0.19577					49	25	2	0	0	0	0.55828	1	555	555		55.504	2.5675	1	559480			83196	5659	57981	58075	92229	92229					0.04637777651430497
VFEAPTIVKV	10	Unmodified	_VFEAPTIVKV_					0	0	0		nc|ENSG00000170017|Q13740-3|ALCAM;ENST00000470756.5_1_3:105086066-105243357:+|nuORF;ENST00000481337.5_1_3:105238990-105260608:+|nuORF;nc|ENSG00000170017|Q13740-2|ALCAM;ENSG00000170017|ENST00000306107|ALCAM	nc|ENSG00000170017|Q13740-3|ALCAM	nc|ENSG00000170017|Q13740-3|ALCAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.8289184570312	2	551.828975	1101.6434	-0.43905	-0.00024228	0.99688	0.00055011	0.55783	0.00030783	551.8293845140449	102.8	2.3433	102.8	102.5	104.84	0.0054245					140	61	4	0	0	0	0.30843	1	13150	13150		108.09	5.3142	1	4472800			83197	8004	57982	58076	92230	92230					0.09664059688270754
VFEEEVILN	9	Unmodified	_VFEEEVILN_					0	0	0		nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2	nc|ENSG00000145725|O43314-2|PPIP5K2	nc|ENSG00000145725|O43314-2|PPIP5K2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.316650390625	2	546.284597	1090.55464	-1.4587	-0.00079687	3.4513	0.0018854	1.9926	0.0010885	546.2862054726171	85.746	2.5186	85.77	84.535	87.054	0.023666					114	59	2	0	0	0	0.024405	1	10760	10760		35.618	0	1	648250			83198	5831	57983	58077	92231	92231					0.012985996579573111
VFEEFGFFYFF	11	Unmodified	_VFEEFGFFYFF_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.78497314453125	3	493.560423	1477.65944	-0.16753	-8.2689E-05	-3.4471	-0.0017014	-3.6147	-0.0017841	493.5586367998004	27.699	0.49623	27.542	27.307	27.804	-0.15664					27	11	3	0	0	0	0.024782	1	1517	1517		25.126	12.169	1	532960			83199	6127	57984	58078	92232	92232					-0.060282788654831165
VFEFLNVL	8	Unmodified	_VFEFLNVL_					0	0	0			REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|21	REV__chr15:53523322-53684228|237|21.71|0.04|9.0|-|0|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	490.773681640625	2	490.776211	979.537869	-1.3191	-0.0006474	-4.2679	-0.0020946	-5.587	-0.002742	490.7739507814715	28.259	0.56395	28.014	27.842	28.406	-0.24524					30	13	4	0	0	0	1.0133	1	1652	1652		35.201	0.04869	1	851850	+		83200	19373	57985	58079	92233	92233					0.04728143562670084
VFEGERSNI	9	Unmodified	_VFEGERSNI_					0	0	0		nc|ENSG00000148842|Q9H8M5-3|CNNM2;nc|ENSG00000148842|Q9H8M5-2|CNNM2;ENSG00000148842|ENST00000369878|CNNM2	nc|ENSG00000148842|Q9H8M5-3|CNNM2	nc|ENSG00000148842|Q9H8M5-3|CNNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2716064453125	2	525.764363	1049.51417	-0.69482	-0.00036531	0.61193	0.00032173	-0.082889	-4.358E-05	525.7645173562981	39.596	0.41789	39.62	39.49	39.908	0.023727					26	11	3	0	0	0	0.0242	1	3360	3360		69.628	0	1	1226200			83201	18372	57986	58080	92234	92234					-0.008603219417864238
VFEKELAV	8	Unmodified	_VFEKELAV_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;SPTA1|p.G1024Afs*87|1|0.4|ENSG00000163554|chr1:158653391-158653391|C/-|frameshift_variant	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.7669982910156	2	467.765843	933.517133	0.30522	0.00014277	0.13733	6.4236E-05	0.44254	0.00020701	467.7656345433532	87.021	0.84044	87.021	86.733	87.573	0					52	19	4	0	0	0	0.29372	1	10938	10938		114.59	13.374	1	1033000			83202	7105	57987	58081	92235	92235					0.04771553183002197
VFEKEPLYGG	10	Unmodified	_VFEKEPLYGG_					0	0	0		nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO;PCLO|p.L2932*|1|0.19|ENSG00000186472|chr7:82952158-82952158|A/-|frameshift_variant;PCLO|p.E3238Nfs*26|1|0.43|ENSG00000186472|chr7:82950876-82950876|C/-|frameshift_variant;PCLO|p.P3614Lfs*23|1|0.21|ENSG00000186472|chr7:82949747-82949747|G/-|frameshift_variant;PCLO|p.S2108*|1|0.22|ENSG00000186472|chr7:82954630-82954630|G/-|frameshift_variant	nc|ENSG00000186472|Q9Y6V0-6|PCLO	nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	568.8023071289062	2	569.792589	1137.57063	-1.142	-0.0006507	1.5113	0.00086114	0.36932	0.00021044	570.2951507807219	81.162	0.60646	81.162	80.899	81.506	0					21	12	3	0	0	0	0.03519	1	10154	10154		52.937	12.364	1	157680			83203	9552	57988	58082	92236	92236					0.0073430589486633835
VFELPVLC	8	Unmodified	_VFELPVLC_					0	0	0			REV__ENST00000530302.1_1_5:157218668-157230721:-|nuORF	REV__ENST00000530302.1_1_5:157218668-157230721:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	459.263916015625	2	460.251514	918.488476	0.44636	0.00020544	-4.4221	-0.0020353	-3.9757	-0.0018298	460.24935505069107	42.539	0.70839	42.565	42.152	42.861	0.026012					31	19	2	0	0	0	0.027866	1	3793	3793		28.254	0	1	652220	+		83204	34534	57989	58083	92237	92237					0.025971122822056714
VFEMLLMAN	9	Unmodified	_VFEMLLMAN_					0	0	0			REV__nc|ENSG00000172508|A5YM72|CARNS1	REV__nc|ENSG00000172508|A5YM72|CARNS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.8042602539062	2	534.266838	1066.51912	-0.64001	-0.00034193	-0.31184	-0.0001666	-0.95184	-0.00050854	534.2666739869579	45.23	0.19711	45.274	45.18	45.377	0.043877					7	5	2	0	0	0	0.024263	1	4334	4334		42.396	5.237	1	159630	+		83205	26680	57990	58084	92238	92238					-0.011474773950340023
VFEMLLMAN	9	Unmodified	_VFEMLLMAN_					0	0	0			REV__nc|ENSG00000172508|A5YM72|CARNS1	REV__nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.266838	1066.51912	-1.0506	-0.00056129	0.99327	0.00053067	-0.057311	-3.062E-05	534.2670313689397	45.047	0.48692	44.947	44.633	45.12	-0.099449	-0.096761	0.00077149	NaN	42.396	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383950	+		83206	26680	57990	58084							-0.011474773950340023
VFEMLLMAN	9	Unmodified	_VFEMLLMAN_					0	0	0			REV__nc|ENSG00000172508|A5YM72|CARNS1	REV__nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.266838	1066.51912	-0.68002	-0.00036331	0.39654	0.00021186	-0.28348	-0.00015145	534.2663023226409	45.196	0.68286	44.944	44.709	45.392	-0.25252	-0.10031	0.00013387	NaN	42.396	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356340	+		83207	26680	57990	58084							-0.011474773950340023
VFERKKKI	8	Unmodified	_VFERKKKI_					0	0	0		ENST00000205061.9_2_16:74481415-74481883:-|nuORF	ENST00000205061.9_2_16:74481415-74481883:-|nuORF	ENST00000205061.9_2_16:74481415-74481883:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2901000976562	2	524.337301	1046.66005	-0.024038	-1.2604E-05	0.2278	0.00011945	0.20377	0.00010684	524.3384381681539	71.931	0.1189	71.656	71.588	71.706	-0.27509					4	2	2	0	0	0	0.027866	1	8414	8414		47.916	0	1	36759			83208	11136	57991	58085	92239	92239					0.13858605364907817
VFERVVTL	8	Unmodified	_VFERVVTL_					0	0	0			REV__ENSG00000221888|ENST00000641256|OR1C1	REV__ENSG00000221888|ENST00000641256|OR1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	482.2850646972656	2	481.78711	961.559667	-0.11486	-5.5336E-05	-0.32663	-0.00015737	-0.44149	-0.0002127	481.78679696667655	54.382	0.41635	54.137	53.92	54.337	-0.2453					23	12	3	0	0	0	0.027866	1	5801	5801		8.2313	0	1	372400	+		83209	28836	57992	58086	92240	92240					0.07734948311247081
VFERWMEWQPE	11	Unmodified	_VFERWMEWQPE_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7698364257812	3	512.902855	1535.68673	-0.36629	-0.00018787	-0.43162	-0.00022138	-0.7979	-0.00040925	513.2372715111585	31.18	0.34025	31.192	31.041	31.382	0.011797					11	7	2	0	0	0	0.024856	1	2047	2047		13.508	0.55046	1	43914			83210	2313	57993	58087	92241	92241					-0.05968118596751992
VFESDVNLK	9	Unmodified	_VFESDVNLK_					0	0	0		ENST00000464213.1_1_7:80300260-80302160:+|nuORF;nc|ENSG00000135218|P16671-4|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	ENST00000464213.1_1_7:80300260-80302160:+|nuORF	ENST00000464213.1_1_7:80300260-80302160:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.7927856445312	2	525.776939	1049.53933	0.50722	0.00026668	0.57729	0.00030353	1.0845	0.00057021	525.7772798129014	70.322	0.27506	70.029	69.795	70.07	-0.29292					11	6	2	0	0	0	0.024506	1	8463	8463		30.504	0	1	383830			83211	4868	57994	58088	92242	92242					0.016537328607682866
VFEVRKRR	8	Unmodified	_VFEVRKRR_					0	0	0			REV__ENSG00000006118|ENST00000453848|TMEM132A	REV__ENSG00000006118|ENST00000453848|TMEM132A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3164672851562	2	545.335624	1088.6567	-0.41513	-0.00022639	0.86168	0.0004699	0.44655	0.00024352	545.338617130205	89.166	0.84589	89.039	88.914	89.76	-0.12774					27	19	2	0	0	0	0.027866	1	10959	10959		15.642	0	1	112530	+		83212	19823	57995	58089	92243	92243					0.11591355310883955
VFFFFFLI	8	Unmodified	_VFFFFFLI_					0	0	0		ENST00000355937.8_1_20:57609923-57610052:-|nuORF	ENST00000355937.8_1_20:57609923-57610052:-|nuORF	ENST00000355937.8_1_20:57609923-57610052:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7906494140625	2	540.301865	1078.58918	-0.77958	-0.00042121	-0.72854	-0.00039363	-1.5081	-0.00081484	540.3004132476767	82.741	0.85885	82.741	82.279	83.138	0					35	19	3	0	0	0	0.027866	1	10374	10374		24.504	0	1	454860			83213	12659	57996	58090	92244	92244					0.053025123273755526
VFFFIISV	8	Unmodified	_VFFFIISV_					0	0	0			REV__ENST00000228872.8_1_12:12870254-12870344:+|nuORF	REV__ENST00000228872.8_1_12:12870254-12870344:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.8127136230469	2	486.283672	970.552791	-0.1685	-8.1941E-05	3.4605	0.0016828	3.2919	0.0016008	486.28518160944543	89.074	1.1846	88.946	88.532	89.716	-0.12774					49	27	2	0	0	0	0.027866	1	10927	10927		20.482	7.0278	1	286450	+		83214	29395	57997	58091	92245	92245					0.06633635430671347
VFFFIISVA	9	Unmodified	_VFFFIISVA_					0	0	0			REV__ENST00000228872.8_1_12:12870254-12870344:+|nuORF	REV__ENST00000228872.8_1_12:12870254-12870344:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.2739868164062	2	521.802229	1041.5899	-0.22384	-0.0001168	4.2335	0.002209	4.0096	0.0020922	521.8037221105526	90.418	0.54749	90.401	90.276	90.823	-0.016716					13	12	2	0	0	0	0.024541	1	11455	11455		12.959	0	1	53636	+		83215	29395	57998	58092	92246	92246					0.07077306976430009
VFFFRTCV	8	Unmodified	_VFFFRTCV_					0	0	0			REV__ENSG00000137817|ENST00000569795|PARP6;REV__ENSG00000151883|ENST00000281631|PARP8	REV__ENSG00000151883|ENST00000281631|PARP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7452392578125	2	509.762581	1017.51061	-0.68967	-0.00035157	-1.5656	-0.0007981	-2.2553	-0.0011497	509.76186774348673	38.484	0.60416	38.401	38.149	38.753	-0.082516					26	15	2	0	0	0	0.027866	1	3266	3266		31.955	0	1	460800	+		83216	23786;24803	57999	58093	92247	92247					0.0025533675063798
VFFGKVDGAV	10	Unmodified	_VFFGKVDGAV_					0	0	0			REV__ENST00000488550.5_1_2:66662823-66662913:+|nuORF	REV__ENST00000488550.5_1_2:66662823-66662913:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7998046875	2	519.784567	1037.55458	0.1393	7.2407E-05	-0.65373	-0.0003398	-0.51443	-0.00026739	519.7841892789297	63.634	0.65352	63.442	63.186	63.84	-0.19243					39	16	3	0	0	0	0.03519	1	7169	7169		31.955	15.482	1	2583400	+		83217	33649	58000	58094	92248	92248					0.037306444486148393
VFFIDSPTVI	10	Unmodified	_VFFIDSPTVI_					0	0	0		nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C	nc|ENSG00000233013|P0CG42|FAM157B	nc|ENSG00000233013|P0CG42|FAM157B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	569.2766723632812	2	569.313158	1136.61176	-0.99205	-0.00056478	-0.017116	-9.7446E-06	-1.0092	-0.00057453	569.314672221291	79.822	1.5082	79.822	79.077	80.585	0					84	35	4	0	0	0	0.03519	1	9867	9867		79.451	2.1334	1	1931000			83218	18748	58001	58095	92249	92249					0.04892066934326067
VFFKLRPE	8	Unmodified	_VFFKLRPE_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MSMS	OPSCC_39_ClassI_Rep-3	3	518.3016357421875	2	518.302927	1034.5913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.3	1	105.3	104.8	105.8	-0.0015945								0	0	0	0.71153	1	13441	13441		40.573	1.7665	1				83219	9617	58002	58096	92250	92250					0.07538941065172367
VFFLFVVM	8	Unmodified	_VFFLFVVM_					0	0	0		nc|ENSG00000102468|P28223-2|HTR2A;ENSG00000102468|ENST00000542664|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	nc|ENSG00000102468|P28223-2|HTR2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.319091796875	2	501.280075	1000.5456	-0.028959	-1.4517E-05	-1.0417	-0.00052217	-1.0706	-0.00053669	501.27909547033005	42.305	0.70179	42.182	41.752	42.454	-0.12299					42	18	4	0	0	0	0.027866	1	3818	3818		24.504	12.297	1	322570			83220	18136	58003	58097	92251	92251					0.04534579558605856
VFFLIDPGLG	10	Unmodified	_VFFLIDPGLG_					0	0	0			REV__ENST00000574285.2_1_16:9197140-9197224:+|nuORF	REV__ENST00000574285.2_1_16:9197140-9197224:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.2838745117188	2	539.302593	1076.59063	-0.71966	-0.00038811	-0.61201	-0.00033006	-1.3317	-0.00071817	539.3023364408986	42.011	1.2159	41.779	41.351	42.567	-0.23186					64	32	3	0	0	0	0.03519	1	3725	3725		29.15	0	1	341740	+		83221	35442	58004	58098	92252	92252					0.0554010162547911
VFFLIDPGLG	10	Unmodified	_VFFLIDPGLG_					0	0	0			REV__ENST00000574285.2_1_16:9197140-9197224:+|nuORF	REV__ENST00000574285.2_1_16:9197140-9197224:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2828369140625	2	539.302593	1076.59063	-1.0218	-0.00055107	0.14901	8.0362E-05	-0.87281	-0.00047071	539.3026905814659	41.839	1.3192	41.608	41.274	42.593	-0.23029					57	35	2	0	0	0	0.03519	1	3726	3726		23.042	5.6775	1	310710	+		83222	35442	58004	58098	92253	92253					0.0554010162547911
VFFLIVVALL	10	Unmodified	_VFFLIVVALL_					0	0	0			REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	REV__ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3297119140625	2	567.370278	1132.726	-0.59468	-0.00033741	-0.96237	-0.00054602	-1.5571	-0.00088343	567.3701006670422	90.591	0.21285	90.466	90.374	90.587	-0.12512					6	4	2	0	0	0	0.03519	1	11091	11091		12.959	2.0936	1	33347	+		83223	23878	58005	58099	92254	92254					0.16495001487101035
VFFPFSIQL	9	Unmodified	_VFFPFSIQL_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3025512695312	2	549.305136	1096.59572	-0.61842	-0.0003397	-3.5517	-0.001951	-4.1701	-0.0022907	549.3031625449072	78.887	1.7112	78.695	78.298	80.009	-0.1921					129	40	6	0	0	0	0.6504	1	9803	9803		49.442	1.7842	1	14463000			83224	7805	58006	58100	92255	92255					0.051284054880852636
VFFPSLFSI	9	Unmodified	_VFFPSLFSI_					0	0	0		ENST00000577684.1_1_17:18314705-18315443:+|nuORF	ENST00000577684.1_1_17:18314705-18315443:+|nuORF	ENST00000577684.1_1_17:18314705-18315443:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.7901000976562	2	528.791861	1055.56917	-0.28265	-0.00014947	-2.306	-0.0012194	-2.5886	-0.0013688	528.790594430676	104.63	0.73366	104.63	104.36	105.09	0.00103					47	22	3	0	0	0	0.55828	1	13396	13396		55.504	0	1	383360			83225	17119	58007	58101	92256	92256					0.04360716596761449
VFFQSLLV	8	Unmodified	_VFFQSLLV_					0	0	0		ENST00000354922.3_1_6:89793769-89793874:+|nuORF	ENST00000354922.3_1_6:89793769-89793874:+|nuORF	ENST00000354922.3_1_6:89793769-89793874:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.30670166015625	2	476.778754	951.542954	0.0082857	3.9504E-06	-0.19029	-9.0727E-05	-0.18201	-8.6777E-05	476.7785452659901	64.367	0.35023	64.174	63.961	64.311	-0.19243					12	8	2	0	0	0	0.027866	1	7304	7304		68.787	18.762	1	131720			83226	12635	58008	58102	92257	92257					0.06524447425294966
VFFSTLTKGG	10	Unmodified	_VFFSTLTKGG_					0	0	0			REV__ENST00000359042.6_1_17:71233009-71239119:+|nuORF	REV__ENST00000359042.6_1_17:71233009-71239119:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	528.7904052734375	2	528.78985	1055.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.83	1	104.66	104.16	105.16	-0.16484								0	0	0	0.75273	1	13036	13036		44.377	0	1		+		83227	30873	58009	58103	92258	92258					0.03958627103043
VFFSVGLFV	9	Unmodified	_VFFSVGLFV_					0	0	0			REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.78448486328125	2	507.786579	1013.5586	-0.26227	-0.00013318	-3.8832	-0.0019718	-4.1454	-0.002105	507.7845669341197	72.678	1.2236	72.678	72.292	73.516	0					71	30	4	0	0	0	0.26797	3	8852	8840;8852;8870		79.939	11.455	1	5150800	+		83228	19981	58010	58104	92259;92260;92261	92260					0.052367339423540216
VFFSVGLFV	9	Unmodified	_VFFSVGLFV_					0	0	0			REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.786579	1013.5586	-0.19723	-0.00010015	-6.035	-0.0030645	-6.2323	-0.0031647	507.78261377777255	72.878	0.63632	72.614	72.3	72.936	-0.26479	-0.038846	-0.0017562	NaN	79.939	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212050	+		83229	19981	58010	58104							0.052367339423540216
VFFSVGLFV	9	Unmodified	_VFFSVGLFV_					0	0	0			REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.786579	1013.5586	-0.61464	-0.0003121	-4.3425	-0.0022051	-4.9572	-0.0025172	507.78420401913485	72.686	0.50471	72.488	72.206	72.71	-0.19811	-0.16488	-3.7271E-05	NaN	79.939	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251700	+		83230	19981	58010	58104							0.052367339423540216
VFGACSLIDLA	11	Unmodified	_VFGACSLIDLA_					0	0	0			REV__nc|ENSG00000020922|P49959-2|MRE11	REV__nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	554.787109375	2	554.788992	1107.56343	0.95948	0.00053231	-4.0949	-0.0022718	-3.1355	-0.0017395	554.7865883209164	82.385	1.4384	82.275	81.842	83.28	-0.11006					105	33	5	0	0	0	0.84811	1	10297	10297		54.776	0.053964	1	8937200	+		83231	19994	58011	58105	92262	92262					0.013952500228015197
VFGEDHPEL	9	Unmodified	_VFGEDHPEL_					0	0	0		CLUH|p.A1142_K1144del|1|0.42|ENSG00000132361|chr17:2692371-2692379|CCTTGAGGG/-|inframe_deletion	CLUH|p.A1142_K1144del|1|0.42|ENSG00000132361|chr17:2692371-2692379|CCTTGAGGG/-|inframe_deletion	CLUH|p.A1142_K1144del|1|0.42|ENSG00000132361|chr17:2692371-2692379|CCTTGAGGG/-|inframe_deletion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7326049804688	2	521.745639	1041.47673	-1.3871	-0.0007237	2.4611	0.0012841	1.0741	0.00056039	521.7475790876842	38.572	0.57719	38.393	38.136	38.713	-0.17929					21	15	2	0	0	0	0.024506	1	3223	3223		38.806	16.846	1	121610			83232	458	58012	58106	92263	92263					-0.04235413207425154
VFGFKPPIPV	10	Unmodified	_VFGFKPPIPV_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.813232421875	2	550.828778	1099.643	-1.4889	-0.00082013	3.7393	0.0020597	2.2504	0.0012396	550.831409625702	38.118	0.22951	38.118	37.969	38.199	0					12	6	2	0	0	0	0.03519	1	3174	3174		24.203	3.7209	1	532630			83233	7413	58013	58107	92264	92264					0.09716684759064265
VFGFKPPIPV	10	Unmodified	_VFGFKPPIPV_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.828778	1099.643	-0.76367	-0.00042065	7.4118	0.0040826	6.6481	0.003662	550.8325107113445	38.153	0.42949	37.974	37.876	38.305	-0.17929	-0.045223	0.00046766	NaN	23.042	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412960			83234	7413	58013	58107							0.09716684759064265
VFGFKPPIPV	10	Unmodified	_VFGFKPPIPV_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.828778	1099.643	-0.83878	-0.00046202	7.3774	0.0040637	6.5386	0.0036017	550.8325900262813	38.187	0.38916	37.965	37.832	38.221	-0.22149	-0.054126	0.00042983	NaN	23.042	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620870			83235	7413	58013	58107							0.09716684759064265
VFGFKPPIPV	10	Unmodified	_VFGFKPPIPV_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.828778	1099.643	-0.68533	-0.0003775	6.8921	0.0037964	6.2068	0.0034189	550.8325253075049	38.238	0.35675	38.02	37.861	38.218	-0.21848	0.00030482	-0.00010477	NaN	23.042	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641210			83236	7413	58013	58107							0.09716684759064265
VFGIENSNKNL	11	Unmodified	_VFGIENSNKNL_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	617.827392578125	2	617.824952	1233.63535	-0.32862	-0.00020303	3.9911	0.0024658	3.6625	0.0022628	617.8273664081208	95.503	0.93824	95.507	95.139	96.078	0.0039825					56	21	4	0	0	0	0.93459	1	12091	12091		49.536	4.5138	1	693370			83237	5771	58014	58108	92265	92265					0.027878807008619333
VFGIENSNKNL	11	Unmodified	_VFGIENSNKNL_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	617.824952	1233.63535	-0.65515	-0.00040477	4.3332	0.0026771	3.678	0.0022724	617.8274642852637	95.48	0.728	95.48	95.136	95.864	0	0.026031	0.00041094	NaN	49.536	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422150			83238	5771	58014	58108							0.027878807008619333
VFGIENSNKNL	11	Unmodified	_VFGIENSNKNL_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	617.824952	1233.63535	0.34726	0.00021455	3.3976	0.0020991	3.7449	0.0023137	617.8269809192491	95.372	0.77081	95.376	95.045	95.815	0.0033798	-0.078567	-0.00074506	NaN	49.536	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485490			83239	5771	58014	58108							0.027878807008619333
VFGILNAFEI	10	Unmodified	_VFGILNAFEI_					0	0	0		ENST00000338051.4_1_5:134192873-134192915:+|nuORF	ENST00000338051.4_1_5:134192873-134192915:+|nuORF	ENST00000338051.4_1_5:134192873-134192915:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	561.7821044921875	2	561.813325	1121.6121	-1.5278	-0.00085835	-0.63271	-0.00035546	-2.1605	-0.0012138	562.3143586660735	64.929	0.22579	64.666	64.532	64.758	-0.2626					8	5	2	0	0	0	0.03519	1	7614	7614		19.104	0	1	91822			83240	12434	58015	58109	92266	92266					0.05615486654187407
VFGIVYSH	8	Unmodified	_VFGIVYSH_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	461.7591247558594	2	461.245078	920.475603	0.10254	4.7294E-05	-3.9149	-0.0018057	-3.8124	-0.0017584	461.24309127192225	37.284	1.228	37.221	36.294	37.522	-0.063389					65	32	3	0	0	0	0.027866	1	2890	2890		37.028	13.986	1	497710	+		83241	22722	58016	58110	92267	92267					0.012184172143292926
VFGLGCLICL	10	Unmodified	_VFGLGCLICL_					0	0	0			REV__ENSG00000011638|ENST00000233047|LDAF1	REV__ENSG00000011638|ENST00000233047|LDAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7694091796875	2	519.279749	1036.54494	-0.99138	-0.0005148	0.064305	3.3392E-05	-0.92707	-0.00048141	519.2795177909268	65.637	0.494	65.423	65.094	65.588	-0.21327					23	11	3	0	0	0	0.03519	1	7526	7526		35.201	0	1	429630	+		83242	19938	58017	58111	92268	92268					0.02813416847220651
VFGLPLAIW	9	Unmodified	_VFGLPLAIW_					0	0	0			REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	REV__ENST00000403729.6_1_4:80992740-80994184:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.3017883300781	2	508.302396	1014.59024	-0.97292	-0.00049454	-0.24312	-0.00012358	-1.216	-0.00061811	508.3020902894339	56.024	1.3523	55.809	55.003	56.356	-0.21551					90	36	3	0	0	0	0.48384	1	6055	6055		60.404	0	1	1989300	+		83243	31895	58018	58112	92269	92269					0.08352726696261925
VFGSVRDDGKF	11	Unmodified	_VFGSVRDDGKF_					0	0	0		ENSG00000106628|ENST00000610533|POLD2;ENST00000511220.1_1_5:92603163-92603583:+|nuORF;ENST00000463464.5_1_7:44156730-44161694:-|nuORF	ENSG00000106628|ENST00000610533|POLD2	ENSG00000106628|ENST00000610533|POLD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.5426025390625	3	409.543655	1225.60914	0.61019	0.0002499	-3.6134	-0.0014799	-3.0032	-0.00123	409.5423486624834	21.981	1.1252	21.793	21.434	22.559	-0.18894					67	23	4	0	0	0	1.0022	1	761	761		36.318	2.396	1	2651300			83244	2803	58019	58113	92270	92270					0.005356115293579933
VFGYVQWP	8	Unmodified	_VFGYVQWP_					0	0	0			REV__ENSG00000164362|ENST00000310581|TERT	REV__ENSG00000164362|ENST00000310581|TERT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2624816894531	2	498.252903	994.491253	-0.71657	-0.00035704	2.1158	0.0010542	1.3992	0.00069715	498.2539372442451	48.147	1.1777	48.049	47.817	48.995	-0.097553					56	31	4	0	0	0	0.027866	1	4741	4741		57.453	12.922	1	2252000	+		83245	25746	58020	58114	92271	92271					-0.006212962686163337
VFHLLSVQV	9	Unmodified	_VFHLLSVQV_					0	0	0			REV__nc|ENSG00000105695|P20916-3|MAG	REV__nc|ENSG00000105695|P20916-3|MAG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.306396484375	2	521.30821	1040.60187	-0.78146	-0.00040738	-2.3274	-0.0012133	-3.1089	-0.0016207	521.3075774927855	53.133	0.98209	53.133	52.673	53.655	0					69	26	4	0	0	0	0.29158	1	5725	5725		76.774	1.7308	1	7460800	+		83246	21555	58021	58115	92272	92272					0.08318923719616578
VFHLLSVQV	9	Unmodified	_VFHLLSVQV_					0	0	0			REV__nc|ENSG00000105695|P20916-3|MAG	REV__nc|ENSG00000105695|P20916-3|MAG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.3070068359375	2	521.30821	1040.60187	-0.75795	-0.00039513	-2.9836	-0.0015554	-3.7416	-0.0019505	521.3070231279734	53.187	0.80917	53.039	52.72	53.529	-0.14723					62	21	5	0	0	0	0.15029	2	5713	5703;5713		99.375	14.214	1	8489300	+		83247	21555	58021	58115	92273;92274	92274					0.08318923719616578
VFHLSSKLS	9	Unmodified	_VFHLSSKLS_					0	0	0		ENSG00000152926|ENST00000282869|ZNF117	ENSG00000152926|ENST00000282869|ZNF117	ENSG00000152926|ENST00000282869|ZNF117	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.27740478515625	2	509.290017	1016.56548	-0.47911	-0.00024401	-0.22551	-0.00011485	-0.70462	-0.00035886	509.28996562344	35.594	0.22766	35.407	35.26	35.488	-0.18675					8	5	2	0	0	0	0.024323	1	2687	2687		44.117	1.7207	1	95210			83248	6306	58022	58116	92275	92275					0.05786046822890967
VFHTLSPVK	9	Unmodified	_VFHTLSPVK_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3231811523438	2	514.300384	1026.58622	-0.28583	-0.000147	-2.6381	-0.0013568	-2.9239	-0.0015038	514.2991270493852	97.582	0.90987	97.582	97.28	98.19	0					32	20	2	0	0	0	0.024541	1	12414	12414		11.511	4.7755	1	91099			83249	1998	58023	58117	92276	92276					0.07398637202550162
VFHVLLIDV	9	Unmodified	_VFHVLLIDV_					0	0	0		ENST00000489591.5_1_17:39969413-39975983:+|nuORF;ENSG00000141756|ENST00000321562|FKBP10	ENST00000489591.5_1_17:39969413-39975983:+|nuORF	ENST00000489591.5_1_17:39969413-39975983:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2713623046875	2	527.81841	1053.62227	-1.1517	-0.00060787	1.5077	0.00079581	0.35606	0.00018793	527.8184893082475	80.774	1.9922	80.774	80.12	82.113	0					81	48	4	0	0	0	0.023775	1	10245	10245		47.916	9.1095	1	908800			83250	5522	58024	58118	92277	92277					0.09760094379430484
VFIACWAPL	9	Unmodified	_VFIACWAPL_					0	0	0		ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.79217529296875	2	510.272781	1018.53101	0.25583	0.00013054	2.6318	0.0013429	2.8876	0.0014735	510.2739555565408	86.42	1.0649	86.42	86.171	87.236	0					42	24	3	0	0	0	0.024289	1	10866	10866		39.021	5.5285	1	439300			83251	8101	58025	58119	92278	92278					0.022485074104451996
VFIFDPPFGV	10	Unmodified	_VFIFDPPFGV_					0	0	0			REV__ENST00000492406.5_1_3:112299413-112299470:+|nuORF	REV__ENST00000492406.5_1_3:112299413-112299470:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2780151367188	2	569.302593	1136.59063	-0.45528	-0.00025919	-4.1927	-0.0023869	-4.648	-0.0026461	569.8016793395749	82.727	0.30401	82.587	82.39	82.694	-0.14014					10	6	2	0	0	0	0.03519	1	9938	9938		45.952	3.4775	1	53287	+		83252	33739	58026	58120	92279	92279					0.02780101625444331
VFIGQDGGGT	10	Unmodified	_VFIGQDGGGT_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.2540283203125	2	475.732532	949.45051	0.42847	0.00020384	3.4045	0.0016196	3.833	0.0018235	475.73398389694916	25.676	2.6166	25.756	24.14	26.757	0.08009					76	60	2	0	0	0	0.03519	1	1326	1326		9.7057	0	1	120040	+		83253	27773	58027	58121	92280	92280					-0.026236823788963193
VFIIYYLI	8	Unmodified	_VFIIYYLI_					0	0	0			REV__ENSG00000180772|ENST00000371906|AGTR2	REV__ENSG00000180772|ENST00000371906|AGTR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7476196289062	2	522.312429	1042.61031	-0.36115	-0.00018863	-2.5393	-0.0013263	-2.9005	-0.001515	522.8109474904253	36.469	0.70577	36.264	36.056	36.762	-0.20518					26	17	3	0	0	0	0.027866	1	2876	2876		43.626	10.133	1	226950	+		83254	27361	58028	58122	92281	92281					0.09070477636237229
VFIIYYLI	8	Unmodified	_VFIIYYLI_					0	0	0			REV__ENSG00000180772|ENST00000371906|AGTR2	REV__ENSG00000180772|ENST00000371906|AGTR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	522.312429	1042.61031	-1.321	-0.00068996	2.3534	0.0012292	1.0324	0.00053926	522.3136449519191	36.097	0.20531	36.054	35.931	36.136	-0.042454	-0.16732	0.0011468	NaN	24.504	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136510	+		83255	27361	58028	58122							0.09070477636237229
VFIIYYLI	8	Unmodified	_VFIIYYLI_					0	0	0			REV__ENSG00000180772|ENST00000371906|AGTR2	REV__ENSG00000180772|ENST00000371906|AGTR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	522.312429	1042.61031	-0.61857	-0.00032309	2.9708	0.0015517	2.3523	0.0012286	522.3138778004958	36.233	0.31034	36.271	36.098	36.409	0.03804	0.049982	0.0017917	NaN	24.504	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114440	+		83256	27361	58028	58122							0.09070477636237229
VFIKMNRVI	9	Unmodified	_VFIKMNRVI_					0	0	0		ENSG00000129244|ENST00000250111|ATP1B2	ENSG00000129244|ENST00000250111|ATP1B2	ENSG00000129244|ENST00000250111|ATP1B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3397827148438	2	560.338987	1118.66342	-0.38797	-0.00021739	2.3922	0.0013405	2.0043	0.0011231	560.3401809188904	101.1	1.8443	101.11	100.79	102.63	0.0090256					135	42	6	0	0	0	0.78069	1	12957	12957		40.573	1.7665	1	14349000			83257	4338	58029	58123	92282	92282					0.10883532147249753
VFILKMKV	8	Unmodified	_VFILKMKV_					0	0	0		ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.31390380859375	2	489.314449	976.614345	0.44356	0.00021704	-1.5098	-0.00073878	-1.0663	-0.00052174	489.31359152290486	94.352	0.88556	94.23	93.842	94.727	-0.12215					55	20	4	0	0	0	1.0574	1	11659	11659		8.8223	0	1	1081100			83258	9024	58030	58124	92283	92283					0.1251024385829851
VFILPALNL	9	Unmodified	_VFILPALNL_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3131103515625	2	500.315503	998.616454	-0.090474	-4.5266E-05	-4.4205	-0.0022116	-4.511	-0.0022569	500.31332521540634	76.17	3.2658	76.17	75.769	79.035	0					276	79	5	0	0	0	0.26797	1	9438	9438		79.939	3.1651	1	55910000			83259	17782	58031	58125	92284	92284					0.11708995867729755
VFILPALNL	9	Unmodified	_VFILPALNL_					0	0	0		KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	KBTBD6|p.C613Afs*34|1|0.26|ENSG00000165572|chr13:41130675-41130675|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.3127136230469	2	500.315503	998.616454	-0.39709	-0.00019867	-4.0718	-0.0020372	-4.4689	-0.0022358	500.3135104911785	76.329	3.772	76.101	75.528	79.3	-0.22843					266	92	6	0	0	0	0.20304	1	9613	9613		88.643	3.482	1	57941000			83260	17782	58031	58125	92285	92285					0.11708995867729755
VFILTGAS	8	Unmodified	_VFILTGAS_					0	0	0		nc|ENSG00000113073|Q96Q91-4|SLC4A9;nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	404.23291015625	2	404.234179	806.453805	-0.10547	-4.2633E-05	-3.6241	-0.001465	-3.7296	-0.0015076	404.23247999449234	84.477	3.3436	84.404	82.163	85.507	-0.072769					158	78	4	0	0	0	1.0572	1	10539	10539		28.254	0	1	13931000			83261	3259	58032	58126	92286	92286					0.04283612465758324
VFIMKKNTL	9	Unmodified	_VFIMKKNTL_					0	0	0			REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.327880859375	2	547.325545	1092.63654	-0.17293	-9.4651E-05	3.1694	0.0017347	2.9965	0.0016401	547.3271763228121	57.592	0.91434	57.417	56.769	57.684	-0.1749					71	24	4	0	0	0	0.67308	1	6466	6466		47.916	5.5195	1	4166200	+		83262	26481	58033	58127	92287	92287					0.09392423536064598
VFIPEEGRVPT	11	Unmodified	_VFIPEEGRVPT_					0	0	0			REV__ENSG00000176624|ENST00000406189|MEX3C	REV__ENSG00000176624|ENST00000406189|MEX3C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	622.3370361328125	2	622.337695	1242.66084	0.39402	0.00024521	-2.0935	-0.0013029	-1.6995	-0.0010577	622.336188137673	109.98	0.52066	109.97	109.79	110.31	-0.009491					57	23	4	0	0	0	0.98218	1	13916	13916		40.778	5.6261	1	2001700	+		83263	27035	58034	58128	92288	92288					0.04921355223291357
VFITKGDVGV	10	Unmodified	_VFITKGDVGV_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7466430664062	2	517.797675	1033.5808	0.33489	0.0001734	-0.66491	-0.00034429	-0.33003	-0.00017089	517.7969445503194	48.017	0.41709	47.83	47.635	48.052	-0.18684					19	10	3	0	0	0	0.03519	1	4698	4698		23.523	11.316	1	205480			83264	9404	58035	58129	92289	92289					0.06534913620112093
VFITTLSA	8	Unmodified	_VFITTLSA_					0	0	0			REV__ENST00000607662.1_1_5:8446330-8452338:-|nuORF	REV__ENST00000607662.1_1_5:8446330-8452338:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2462158203125	2	426.247286	850.48002	0.53403	0.00022763	-3.626	-0.0015456	-3.092	-0.0013179	426.24566550272664	89.556	2.4252	89.419	88.44	90.865	-0.13762					100	57	3	0	0	0	1.0574	1	10935	10935		26.796	2.2921	1	549880	+		83265	35955	58036	58130	92290	92290					0.04879881637248218
VFIVTATHI	9	Unmodified	_VFIVTATHI_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.798583984375	2	500.794935	999.575317	-0.32576	-0.00016314	4.3199	0.0021634	3.9942	0.0020003	500.7983165331858	93.371	1.1756	93.227	92.914	94.09	-0.1441					73	26	5	0	0	0	0.78069	1	11499	11499		40.573	0	1	1859500	+		83266	28655	58037	58131	92291	92291					0.07551234828292763
VFIVVIVVMA	10	Unmodified	_VFIVVIVVMA_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.3165283203125	2	545.340664	1088.66677	-1.0934	-0.00059626	3.006	0.0016393	1.9126	0.001043	545.3420740916937	89.873	0.29131	89.71	89.645	89.936	-0.1626					9	6	2	0	0	0	0.03519	1	10981	10981		26.796	0	1	72668	+		83267	27649	58038	58132	92292	92292					0.12598782201257563
VFKHQVKL	8	Unmodified	_VFKHQVKL_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.27490234375	2	499.810919	997.607286	-0.093041	-4.6503E-05	-4.3936	-0.002196	-4.4867	-0.0022425	499.808389586068	40.304	0.62881	40.192	39.754	40.382	-0.11223					36	16	3	0	0	0	0.027866	1	3543	3543		19.36	3.7182	1	429890	+		83268	21457	58039	58133	92293	92293					0.10838647302091431
VFKIAPMLN	9	Unmodified	_VFKIAPMLN_					0	0	0		ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4	ENSG00000186094|ENST00000371839|AGBL4	ENSG00000186094|ENST00000371839|AGBL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2669067382812	2	516.799163	1031.58377	-0.42098	-0.00021756	-4.1716	-0.0021559	-4.5926	-0.0023734	516.7970925592925	31.063	0.46836	31.074	30.831	31.299	0.011797					28	10	4	0	0	0	0.024457	1	2042	2042		45.952	27.628	1	164000			83269	9511	58040	58134	92294	92294					0.06924465473275632
VFKITTTKQ	9	Unmodified	_VFKITTTKQ_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8048095703125	2	533.318774	1064.623	-0.91335	-0.00048711	-1.4206	-0.00075763	-2.3339	-0.0012447	533.3188773701728	45.345	0.43885	45.196	45.044	45.483	-0.1488					30	12	3	0	0	0	0.024397	1	4365	4365		39.253	6.4404	1	1330500			83270	3503	58041	58135	92295	92295					0.09326889028443475
VFKKAKRL	8	Unmodified	_VFKKAKRL_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2973937988281	2	495.334562	988.65457	0.80745	0.00039996	2.0522	0.0010165	2.8596	0.0014165	495.3354376917974	54.311	0.29794	54.409	54.26	54.558	0.098015					14	8	3	0	0	0	0.027866	1	5854	5854		33.516	0	1	224190	+		83271	19868	58042	58136	92296	92296					0.15978926573086483
VFKKKIAD	8	Unmodified	_VFKKKIAD_					0	0	0			REV__nc|ENSG00000101958|P23416-3|GLRA2	REV__nc|ENSG00000101958|P23416-3|GLRA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.75592041015625	2	474.797478	947.580402	0.19691	9.3494E-05	-0.12893	-6.1215E-05	0.067984	3.2279E-05	474.7972885285387	70.29	0.3989	70.076	69.814	70.213	-0.21425					27	9	4	0	0	0	0.027866	1	8166	8166		17.365	0	1	1417500	+		83272	21269	58043	58137	92297	92297					0.10451538690904272
VFKKKYNT	8	Unmodified	_VFKKKYNT_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.29833984375	2	514.300384	1026.58622	0.092328	4.7485E-05	-4.1912	-0.0021555	-4.0988	-0.002108	514.2981816905186	95.108	0.82266	95.112	94.651	95.474	0.0033722					47	18	5	0	0	0	1.0239	1	12071	12071		33.516	1.5607	1	1292300	+		83273	27537	58044	58138	92298	92298					0.07398637202550162
VFKKRRTEN	9	Unmodified	_VFKKRRTEN_					0	0	0		nc|ENSG00000120688|O75554-2|WBP4;ENSG00000120688|ENST00000379487|WBP4	nc|ENSG00000120688|O75554-2|WBP4	nc|ENSG00000120688|O75554-2|WBP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3431396484375	2	589.343646	1176.67274	-1.6043	-0.00094547	0.20595	0.00012138	-1.3983	-0.0008241	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	0.87448	1	11864	11864		34.173	0.25091	1	12648000			83274	3828	58045	58139	92299	92299					0.09147016757174242
VFKKRRTEN	9	Unmodified	_VFKKRRTEN_					0	0	0		nc|ENSG00000120688|O75554-2|WBP4;ENSG00000120688|ENST00000379487|WBP4	nc|ENSG00000120688|O75554-2|WBP4	nc|ENSG00000120688|O75554-2|WBP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3428955078125	2	589.343646	1176.67274	-1.1102	-0.00065427	-0.23125	-0.00013629	-1.3414	-0.00079055	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	0.72875	1	11292	11292		44.117	6.3053	1	4794700			83275	3828	58045	58139	92300	92300					0.09147016757174242
VFKLLPSRS	9	Unmodified	_VFKLLPSRS_					0	0	0			REV__nc|ENSG00000181982|Q6ZUS6|CCDC149	REV__nc|ENSG00000181982|Q6ZUS6|CCDC149	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3093872070312	2	523.821484	1045.62842	0.75409	0.00039501	-1.4344	-0.00075138	-0.68032	-0.00035637	523.8208789741418	71.206	0.76124	71	70.659	71.42	-0.20613					24	17	2	0	0	0	0.024374	1	8337	8337		49.442	28.495	1	229820	+		83276	27441	58046	58140	92301	92301					0.1074261261094307
VFKNSQPDY	9	Unmodified	_VFKNSQPDY_					0	0	0			REV__ENSG00000175946|ENST00000684634|KLHL38	REV__ENSG00000175946|ENST00000684634|KLHL38	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	549.28515625	2	549.266739	1096.51892	0.049401	2.7134E-05	-1.5363	-0.00084383	-1.4869	-0.00081669	549.2656538213328	49.944	0.2216	49.839	49.635	49.856	-0.10558					6	5	2	0	0	0	0.0245	1	5030	5030		44.377	13.874	1	82703	+		83277	26985	58047	58141	92302	92302					-0.025474377990576613
VFKQEKGKQP	10	Unmodified	_VFKQEKGKQP_					0	0	0		ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	ENSG00000109445|ENST00000262990|ZNF330	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	594.2633666992188	2	594.840405	1187.66626	-0.56986	-0.00033898	0.049795	2.962E-05	-0.52007	-0.00030936	594.8406249444656	47.011	0.36491	46.915	46.719	47.083	-0.096649					13	9	2	0	0	0	0.03519	1	4559	4559		23.042	3.939	1	102130			83278	2975	58048	58142	92303	92303					0.07993078805770892
VFKRAASP	8	Unmodified	_VFKRAASP_					0	0	0			REV__ENSG00000070501|ENST00000265421|POLB	REV__ENSG00000070501|ENST00000265421|POLB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	439.2481689453125	2	438.25852	874.502486	-0.44108	-0.0001933	1.1344	0.00049714	0.69328	0.00030383	438.2587605348333	33.397	0.79952	33.404	32.888	33.687	0.0066261					31	21	2	0	0	0	0.027866	1	2332	2332		23.042	13.572	1	170260	+		83279	20428	58049	58143	92304	92304					0.06021525825519802
VFKSSYKLND	10	Unmodified	_VFKSSYKLND_					0	0	0			REV__ENSG00000143816|ENST00000272164|WNT9A	REV__ENSG00000143816|ENST00000272164|WNT9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	401.8655700683594	3	400.880156	1199.61864	-0.85834	-0.00034409	-0.60675	-0.00024323	-1.4651	-0.00058733	401.2142476151767	42.941	1.3424	42.715	42.001	43.344	-0.22597					58	35	2	0	0	0	0.03519	1	3970	3970		30.569	0	1	271840	+		83280	24287	58050	58144	92305	92305					0.026813798149305512
VFKTKKKV	8	Unmodified	_VFKTKKKV_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.2728576660156	2	489.328945	976.643337	0.77379	0.00037864	-1.364	-0.00066747	-0.59026	-0.00028883	489.3282653610619	59.278	0.36267	59.037	58.814	59.177	-0.24165					13	8	2	0	0	0	0.027866	1	6525	6525		8.2313	0	1	147500	+		83281	35120	58051	58145	92306	92306					0.15408104478945006
VFLAPSAF	8	Unmodified	_VFLAPSAF_					0	0	0		ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	426.2389831542969	2	426.236722	850.45889	0.16145	6.8818E-05	4.22	0.0017987	4.3814	0.0018675	426.2385205947043	58.082	0.26736	57.892	57.789	58.056	-0.19018					11	6	2	0	0	0	1.0133	1	6387	6387		35.201	1.7077	1	1880500			83282	14574	58052	58146	92307	92307					0.027679163283778507
VFLAPSAF	8	Unmodified	_VFLAPSAF_					0	0	0		ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	426.236722	850.45889	-0.32246	-0.00013744	4.2327	0.0018041	3.9102	0.0016667	426.2385972281959	57.671	0.22918	57.671	57.567	57.796	0	-0.099702	7.3518E-05	NaN	35.201	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1253600			83283	14574	58052	58146							0.027679163283778507
VFLAPSAF	8	Unmodified	_VFLAPSAF_					0	0	0		ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	426.236722	850.45889	-0.25974	-0.00011071	4.3184	0.0018407	4.0587	0.00173	426.238769846629	57.9	0.21612	57.725	57.608	57.825	-0.1749	-0.046002	0.0001466	NaN	35.201	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	881300			83284	14574	58052	58146							0.027679163283778507
VFLAPSAF	8	Unmodified	_VFLAPSAF_					0	0	0		ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	426.236722	850.45889	-0.25914	-0.00011046	4.4307	0.0018885	4.1715	0.0017781	426.23846841886166	57.547	0.22241	57.642	57.503	57.725	0.09531	-0.12869	0.00024231	NaN	35.201	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	840630			83285	14574	58052	58146							0.027679163283778507
VFLAPSAF	8	Unmodified	_VFLAPSAF_					0	0	0		ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	ENST00000455271.5_1_15:63449103-63449277:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	426.236722	850.45889	0.30409	0.00012961	3.7832	0.0016125	4.0873	0.0017421	426.2383551597777	58.098	0.26447	57.865	57.702	57.966	-0.23363	0.094036	-0.00030967	NaN	35.201	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1808500			83286	14574	58052	58146							0.027679163283778507
VFLARVVGN	9	Unmodified	_VFLARVVGN_					0	0	0		TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant;ENSG00000075568|ENST00000186436|TMEM131	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	TMEM131|p.C1612Afs*23|1|0.23|ENSG00000075568|chr2:97762091-97762091|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7906494140625	2	487.792727	973.5709	-0.96209	-0.0004693	-3.3876	-0.0016524	-4.3497	-0.0021217	487.791008935931	82.797	2.8056	82.824	82.231	85.037	0.02655					218	65	4	0	0	0	0.78069	2	10307	10307;10398		40.573	3.6054	1	1891000			83287	1562	58053	58147	92308;92309	92308					0.08305770405388557
VFLCLFRH	8	Unmodified	_VFLCLFRH_					0	0	0		ENST00000246024.6_1_20:7964451-7967995:-|nuORF	ENST00000246024.6_1_20:7964451-7967995:-|nuORF	ENST00000246024.6_1_20:7964451-7967995:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2989501953125	2	517.783847	1033.55314	0.05645	2.9229E-05	1.0948	0.00056686	1.1512	0.00059609	517.7841139449016	58.615	0.44022	58.706	58.486	58.926	0.091217					26	11	3	0	0	0	0.027866	1	6544	6544		23.037	2.5549	1	148720			83288	11316	58054	58148	92310	92310					0.037707318788534394
VFLDDLDED	9	Unmodified	_VFLDDLDED_					0	0	0			REV__nc|ENSG00000121152|Q15003-2|NCAPH	REV__nc|ENSG00000121152|Q15003-2|NCAPH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.7965087890625	2	540.740219	1079.46589	-0.20194	-0.0001092	-1.92	-0.0010382	-2.1219	-0.0011474	540.7389209321894	99.227	0.40161	99.227	99.045	99.447	0					11	8	2	0	0	0	0.024381	1	12666	12666		45.952	31.087	1	28007	+		83289	22583	58055	58149	92311	92311					-0.07066860372378869
VFLDDLDED	9	Unmodified	_VFLDDLDED_					0	0	0			REV__nc|ENSG00000121152|Q15003-2|NCAPH	REV__nc|ENSG00000121152|Q15003-2|NCAPH	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.740219	1079.46589	-0.28563	-0.00015445	-2.6219	-0.0014178	-2.9075	-0.0015722	540.7386907819839	99.326	0.35687	99.322	99.166	99.523	-0.0038834	0.047824	-0.00047732	NaN	45.952	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27483	+		83290	22583	58055	58149							-0.07066860372378869
VFLEKLKKD	9	Unmodified	_VFLEKLKKD_					0	0	0		nc|ENSG00000150867|P48426-2|PIP4K2A;ENSG00000150867|ENST00000376573|PIP4K2A	nc|ENSG00000150867|P48426-2|PIP4K2A	nc|ENSG00000150867|P48426-2|PIP4K2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.340087890625	2	560.342249	1118.66995	0.14489	8.1187E-05	-3.9654	-0.002222	-3.8205	-0.0021408	560.3398724189238	101.17	1.8281	101.17	100.81	102.63	-0.0054474					131	41	5	0	0	0	0.80003	1	12905	12905		39.253	2.8061	1	15569000			83291	6158	58056	58150	92312	92312					0.11535748579603933
VFLFVCLLL	9	Unmodified	_VFLFVCLLL_					0	0	0			REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.7978515625	2	533.822107	1065.62966	-0.51426	-0.00027452	4.2586	0.0022733	3.7443	0.0019988	533.8248029496143	55.414	0.20998	55.258	55.194	55.404	-0.15601					7	5	2	0	0	0	0.024389	1	6081	6081		29.842	0	1	46470	+		83292	34843	58057	58151	92313	92313					0.09947110655480174
VFLGKSALAL	10	Unmodified	_VFLGKSALAL_					0	0	0			REV__chr2:172469308-172470974|183|109.68|0.39|8.13|+|0|None,ITGA6|1	REV__chr2:172469308-172470974|183|109.68|0.39|8.13|+|0|None,ITGA6|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2716979980469	2	509.81841	1017.62227	0.19706	0.00010047	-1.1903	-0.00060682	-0.9932	-0.00050635	509.81788112929365	49.849	0.63791	49.743	49.411	50.049	-0.10558					28	16	3	0	0	0	0.03519	1	5075	5075		37.159	0	1	328890	+		83293	19409	58058	58152	92314	92314					0.11416094379399055
VFLGSEKGII	10	Unmodified	_VFLGSEKGII_					0	0	0		nc|ENSG00000092421|Q9H2E6-2|SEMA6A;ENSG00000092421|ENST00000343348|SEMA6A;ENST00000514316.1_1_5:115814236-115815903:-|nuORF	nc|ENSG00000092421|Q9H2E6-2|SEMA6A	nc|ENSG00000092421|Q9H2E6-2|SEMA6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7984619140625	2	531.813325	1061.6121	-0.094496	-5.0254E-05	2.3811	0.0012663	2.2866	0.001216	532.3143800937273	98.463	0.63177	98.473	98.148	98.78	0.010231					21	14	2	0	0	0	0.03519	1	12583	12583		39.253	13.803	1	117660			83294	1990	58059	58153	92315	92315					0.08375486654199449
VFLHERELWLK	11	Unmodified	_VFLHERELWLK_					0	0	0		nc|ENSG00000089225|Q99593-2|TBX5;nc|ENSG00000089225|Q99593-3|TBX5;ENSG00000089225|ENST00000405440|TBX5	nc|ENSG00000089225|Q99593-2|TBX5	nc|ENSG00000089225|Q99593-2|TBX5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.77191162109375	3	490.613633	1468.81907	-0.040082	-1.9665E-05	-0.38832	-0.00019052	-0.42841	-0.00021018	490.61347576154725	42.995	0.57874	42.855	42.484	43.063	-0.13929					28	15	2	0	0	0	0.024727	1	3949	3949		23.378	14.166	1	546130			83295	1903	58060	58154	92316	92316					0.1034127420234654
VFLILCLL	8	Unmodified	_VFLILCLL_					0	0	0		ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENST00000302806.5_1_4:48621203-48655803:-|nuORF	ENST00000302806.5_1_4:48621203-48655803:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.262939453125	2	467.295725	932.576897	0.70096	0.00032756	-4.41	-0.0020608	-3.709	-0.0017332	467.2946287890367	50.443	0.26476	50.524	50.377	50.642	0.080994					9	7	2	0	0	0	0.027866	1	5218	5218		16.705	1.0687	1	89274			83296	11962	58061	58155	92317	92317					0.10791152592673825
VFLKKQDAD	9	Unmodified	_VFLKKQDAD_					0	0	0		ENST00000368678.8_1_6:112041256-112194621:-|nuORF	ENST00000368678.8_1_6:112041256-112194621:-|nuORF	ENST00000368678.8_1_6:112041256-112194621:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7986450195312	2	532.292756	1062.57096	-0.57925	-0.00030833	4.0524	0.0021571	3.4732	0.0018488	532.2946716746322	101.14	0.90977	101.14	100.82	101.73	0					32	20	2	0	0	0	0.024427	1	13023	13023		42.396	0	1	798520			83297	12900	58062	58156	92318	92318					0.04217725614716983
VFLKRLNH	8	Unmodified	_VFLKRLNH_					0	0	0			REV__ENSG00000168280|ENST00000435030|KIF5C;REV__ENSG00000170759|ENST00000302418|KIF5B	REV__ENSG00000170759|ENST00000302418|KIF5B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.8143920898438	2	513.813993	1025.61343	-0.94853	-0.00048737	3.5421	0.00182	2.5936	0.0013326	513.8156433009345	44.854	0.93732	44.755	44.317	45.254	-0.099445					54	24	4	0	0	0	1.0574	1	4208	4208		26.796	0	1	2718800	+		83298	26501;26243	58063	58157	92319	92319					0.10165165533612708
VFLLASAALAN	11	Unmodified	_VFLLASAALAN_					0	0	0		nc|ENSG00000188487|Q1MX18-3|INSC;ENST00000447214.6_1_11:15209769-15267583:+|nuORF;nc|ENSG00000188487|Q1MX18-4|INSC;nc|ENSG00000188487|Q1MX18-6|INSC;ENSG00000188487|ENST00000379556|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3165893554688	2	545.318774	1088.623	-0.4393	-0.00023956	-3.572	-0.0019479	-4.0113	-0.0021875	545.3167011647485	87.211	2.5302	87.073	85.702	88.232	-0.13734					199	59	4	0	0	0	1.0483	1	10568	10568		25.574	2.0514	1	5204600			83299	9723	58064	58158	92320	92320					0.08222889028456848
VFLLGVTRN	9	Unmodified	_VFLLGVTRN_					0	0	0		ENST00000316660.6_1_18:57570570-57570669:+|nuORF	ENST00000316660.6_1_18:57570570-57570669:+|nuORF	ENST00000316660.6_1_18:57570570-57570669:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8031921386719	2	509.805834	1017.59712	0.26088	0.000133	-4.4458	-0.0022665	-4.185	-0.0021335	509.8034341260335	98.051	1.1848	98.061	97.728	98.913	0.010231					53	27	3	0	0	0	0.90698	1	12497	12497		31.955	2.1133	1	929870			83300	12150	58065	58159	92321	92321					0.08902039576844345
VFLLMLSPP	9	Unmodified	_VFLLMLSPP_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7768249511719	2	508.796089	1015.57763	-0.39875	-0.00020288	3.5176	0.0017897	3.1189	0.0015869	508.7975924241759	82.142	0.93054	82.168	81.899	82.83	0.025711					30	21	2	0	0	0	0.024517	1	10223	10223		19.36	0	1	440270			83301	17863	58066	58160	92322	92322					0.07045947241726935
VFLLMLSPP	9	Unmodified	_VFLLMLSPP_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.796089	1015.57763	0.4873	0.00024794	1.9022	0.00096785	2.3895	0.0012158	508.79653711987254	82.285	0.38805	82.065	81.785	82.173	-0.22015	-0.04633	-0.0011331	NaN	19.36	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98586			83302	17863	58066	58160							0.07045947241726935
VFLLMLSPP	9	Unmodified	_VFLLMLSPP_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.796089	1015.57763	-0.016037	-8.1596E-06	2.5993	0.0013225	2.5833	0.0013144	508.7970568790358	82.219	0.47292	82.038	81.814	82.287	-0.18079	-0.07307	-0.00042373	NaN	19.36	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82636			83303	17863	58066	58160							0.07045947241726935
VFLLMLSPP	9	Unmodified	_VFLLMLSPP_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|114|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.796089	1015.57763	-0.95408	-0.00048543	2.9942	0.0015234	2.0401	0.001038	508.7973795079493	82.161	0.38962	82.021	81.87	82.26	-0.14014	-0.090154	-2.193E-05	NaN	19.36	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98395			83304	17863	58066	58160							0.07045947241726935
VFLLQQLR	8	Unmodified	_VFLLQQLR_					0	0	0			REV__ENSG00000173285|ENST00000641535|OR10K1	REV__ENSG00000173285|ENST00000641535|OR10K1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.8055419921875	2	508.816202	1015.61785	-0.68794	-0.00035004	3.4614	0.0017612	2.7735	0.0014112	508.81749301941176	83.117	0.12986	83.117	83.008	83.138	0					4	2	2	0	0	0	0.027866	1	10379	10379		14.664	0	1	35218	+		83305	26763	58067	58161	92323	92323					0.11066629956519591
VFLLREQN	8	Unmodified	_VFLLREQN_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.8036193847656	2	509.787641	1017.56073	0.20115	0.00010254	-0.013706	-6.9873E-06	0.18744	9.5557E-05	509.7877889229296	86.029	0.65221	85.834	85.594	86.246	-0.19508					18	14	2	0	0	0	0.027866	1	10466	10466		40.573	0	1	25974	+		83306	23569	58068	58162	92324	92324					0.05265162680143476
VFLLRTQA	8	Unmodified	_VFLLRTQA_					0	0	0		ENSG00000135407|ENST00000549994|AVIL;ENST00000548843.1_1_12:58200052-58208006:-|nuORF;nc|ENSG00000135407|O75366-2|AVIL;ENST00000549851.5_1_12:58191667-58209405:-|nuORF	ENSG00000135407|ENST00000549994|AVIL	ENSG00000135407|ENST00000549994|AVIL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7853088378906	2	474.287277	946.560001	0.46897	0.00022243	-0.48759	-0.00023126	-0.018621	-8.8318E-06	474.2868465930916	34.094	0.70101	34.089	33.79	34.491	-0.0045624					27	17	3	0	0	0	0.027866	1	2517	2517		25.45	1.2474	1	1197200			83307	4891	58069	58163	92325	92325					0.08458368031097052
VFLLTTQVGGV	11	Unmodified	_VFLLTTQVGGV_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3294677734375	2	567.331882	1132.64921	0.34076	0.00019332	-4.023	-0.0022824	-3.6823	-0.0020891	567.3294879689347	88.98	2.5687	88.959	87.503	90.072	-0.021645					239	61	5	0	0	0	1.0238	1	11298	11298		31.53	1.0262	1	4116000			83308	9585	58070	58164	92326	92326					0.08819158199935373
VFLLTTQVGGV	11	Unmodified	_VFLLTTQVGGV_					0	0	0		ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	ERCC6L|p.I1229Nfs*7|1|0.27|ENSG00000186871|chrX:72205081-72205082|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.329833984375	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.87847	2	11276	11224;11276		52.937	3.4007	1	4134200			83309	9585	58070	58164	92327;92328	92328					0.08819158199935373
VFLLTTRVGG	10	Unmodified	_VFLLTTRVGG_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8165283203125	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.1329	1	10520	10520		27.882	1.0861	1	4521600			83310	10657	58071	58165	92329	92329					0.09498308748334239
VFLLVMYVV	9	Unmodified	_VFLLVMYVV_					0	0	0		ENSG00000198835|ENST00000366714|GJC2	ENSG00000198835|ENST00000366714|GJC2	ENSG00000198835|ENST00000366714|GJC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.3031005859375	2	541.819564	1081.62458	-0.35853	-0.00019426	-0.90414	-0.00048988	-1.2627	-0.00068414	541.8189254203764	47.517	0.96902	47.364	46.858	47.827	-0.15301					63	27	4	0	0	0	0.024389	1	4700	4700		29.842	0	1	2752400			83311	10218	58072	58166	92330	92330					0.08702806792871343
VFLMICSTHS	10	Unmodified	_VFLMICSTHS_					0	0	0		ENST00000539945.5_1_2:63833100-63833157:+|nuORF	ENST00000539945.5_1_2:63833100-63833157:+|nuORF	ENST00000539945.5_1_2:63833100-63833157:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.3123779296875	2	569.275195	1136.53584	-0.0847	-4.8218E-05	2.8531	0.0016242	2.7684	0.001576	569.2765429349173	80.94	0.86293	80.794	80.076	80.939	-0.14586					55	20	3	0	0	0	0.03519	1	9613	9613		49.442	0	1	604550			83312	16411	58073	58167	92331	92331					-0.026969765091052977
VFLMLDLVI	9	Unmodified	_VFLMLDLVI_					0	0	0			REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8174438476562	2	531.817021	1061.61949	-0.018498	-9.8373E-06	-0.55332	-0.00029426	-0.57182	-0.0003041	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.67308	1	11056	11056		47.916	0.25827	1	3781500	+		83313	33706	58074	58168	92332	92332					0.09114502930242452
VFLMLYLITL	10	Unmodified	_VFLMLYLITL_					0	0	0		ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.2471008300781	3	409.247011	1224.7192	0.3861	0.00015801	-0.90703	-0.0003712	-0.52093	-0.00021319	409.2466817578181	37.591	1.5283	37.591	37.269	38.797	0					127	42	5	0	0	0	0.64538	1	3071	3071		71.877	4.9155	1	11619000			83314	8278	58075	58169	92333	92333					0.11583320544195885
VFLPCPIIF	9	Unmodified	_VFLPCPIIF_					0	0	0		ENST00000521913.6_3_8:26514019-26514187:+|nuORF	ENST00000521913.6_3_8:26514019-26514187:+|nuORF	ENST00000521913.6_3_8:26514019-26514187:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2798461914062	2	524.798632	1047.58271	0.48932	0.00025679	2.6729	0.0014027	3.1622	0.0016595	524.8000440879424	78.167	1.3655	77.975	77.723	79.089	-0.19211					50	32	3	0	0	0	0.024389	1	9757	9757		39.021	0	1	371950			83315	16017	58076	58170	92334	92334					0.06082251104339775
VFLSASCFDS	10	Unmodified	_VFLSASCFDS_					0	0	0		ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	ENSG00000218891|ENST00000325421|ZNF579	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7589111328125	2	538.241875	1074.4692	-0.76082	-0.0004095	3.1543	0.0016978	2.3935	0.0012883	538.7455695043101	39.647	0.3572	39.424	39.186	39.543	-0.22311					9	8	2	0	0	0	0.03519	1	3363	3363		23.042	7.4007	1	100930			83316	10605	58077	58171	92335	92335					-0.06505888799370041
VFLSPPVKP	9	Unmodified	_VFLSPPVKP_					0	0	0		ENST00000420940.6_1_3:39137751-39138060:+|nuORF	ENST00000420940.6_1_3:39137751-39138060:+|nuORF	ENST00000420940.6_1_3:39137751-39138060:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.8055419921875	2	492.299853	982.585153	-0.23523	-0.00011581	-3.2807	-0.0016151	-3.516	-0.0017309	492.2979125169118	60.015	0.59288	59.815	59.5	60.093	-0.20016					38	15	4	0	0	0	0.024405	1	6870	6870		20.947	7.1716	1	2243900			83317	13983	58078	58172	92336	92336					0.09316422833660454
VFLSRRLP	8	Unmodified	_VFLSRRLP_					0	0	0			REV__ENST00000279488.7_1_12:89746238-89746319:-|nuORF	REV__ENST00000279488.7_1_12:89746238-89746319:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.78277587890625	2	494.308544	986.602535	-0.46071	-0.00022773	0.39706	0.00019627	-0.063646	-3.1461E-05	494.30910039525156	56.77	0.6247	56.605	56.35	56.974	-0.16431					36	17	3	0	0	0	0.027866	1	6321	6321		47.916	0	1	460410	+		83318	29871	58079	58173	92337	92337					0.10869763159325885
VFLSVILLP	9	Unmodified	_VFLSVILLP_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.30584716796875	2	500.825704	999.636855	0.08738	4.3762E-05	-1.3401	-0.00067118	-1.2528	-0.00062741	500.8252795372363	106.03	0.2932	105.9	105.77	106.06	-0.1238					18	10	2	0	0	0	0.024466	1	13195	13195		25.45	0	1	57383	+		83319	25641	58080	58174	92338	92338					0.13702166527559712
VFLSVVAILA	10	Unmodified	_VFLSVVAILA_					0	0	0		nc|ENSG00000089505|Q8IZ96-7|CMTM1;nc|ENSG00000089505|Q8IZ96-3|CMTM1;nc|ENSG00000089505|Q8IZ96-4|CMTM1;nc|ENSG00000089505|Q8IZ96-6|CMTM1;nc|ENSG00000089505|Q8IZ96-5|CMTM1;nc|ENSG00000089505|Q8IZ96-2|CMTM1;nc|ENSG00000089505|Q8IZ96|CMTM1;ENSG00000089505|ENST00000379500|CMTM1	nc|ENSG00000089505|Q8IZ96-7|CMTM1	nc|ENSG00000089505|Q8IZ96-7|CMTM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.2713012695312	2	516.328611	1030.64267	-1.4894	-0.000769	-2.946	-0.0015211	-4.4354	-0.0022901	516.3270035017807	28.652	0.41947	28.407	28.202	28.621	-0.24524					13	9	2	0	0	0	0.03519	1	1673	1673		38.806	15.764	1	62934			83320	1909	58081	58175	92339	92339					0.1285726503922433
VFLSVVAILA	10	Unmodified	_VFLSVVAILA_					0	0	0		nc|ENSG00000089505|Q8IZ96-7|CMTM1;nc|ENSG00000089505|Q8IZ96-3|CMTM1;nc|ENSG00000089505|Q8IZ96-4|CMTM1;nc|ENSG00000089505|Q8IZ96-6|CMTM1;nc|ENSG00000089505|Q8IZ96-5|CMTM1;nc|ENSG00000089505|Q8IZ96-2|CMTM1;nc|ENSG00000089505|Q8IZ96|CMTM1;ENSG00000089505|ENST00000379500|CMTM1	nc|ENSG00000089505|Q8IZ96-7|CMTM1	nc|ENSG00000089505|Q8IZ96-7|CMTM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.328611	1030.64267	-0.48693	-0.00025142	-3.7739	-0.0019486	-4.2608	-0.0022	516.3265504968261	28.546	0.42852	28.377	28.213	28.641	-0.16897	-0.029119	-0.00054838	NaN	38.806	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36938			83321	1909	58081	58175							0.1285726503922433
VFLSVVAILA	10	Unmodified	_VFLSVVAILA_					0	0	0		nc|ENSG00000089505|Q8IZ96-7|CMTM1;nc|ENSG00000089505|Q8IZ96-3|CMTM1;nc|ENSG00000089505|Q8IZ96-4|CMTM1;nc|ENSG00000089505|Q8IZ96-6|CMTM1;nc|ENSG00000089505|Q8IZ96-5|CMTM1;nc|ENSG00000089505|Q8IZ96-2|CMTM1;nc|ENSG00000089505|Q8IZ96|CMTM1;ENSG00000089505|ENST00000379500|CMTM1	nc|ENSG00000089505|Q8IZ96-7|CMTM1	nc|ENSG00000089505|Q8IZ96-7|CMTM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.328611	1030.64267	-0.47292	-0.00024418	-4.6386	-0.0023951	-5.1116	-0.0026392	516.3265731599998	28.586	0.29092	28.434	28.321	28.612	-0.15195	0.028305	-0.0014414	NaN	38.806	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47545			83322	1909	58081	58175							0.1285726503922433
VFLTKQKKQY	10	Unmodified	_VFLTKQKKQY_					0	0	0			REV__ENST00000399799.2_1_18:18619516-18622115:-|nuORF	REV__ENST00000399799.2_1_18:18619516-18622115:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8819580078125	2	641.87953	1281.74451	0.34309	0.00022022	4.1213	0.0026454	4.4644	0.0028656	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	1.1259	1	11705	11705		24.203	1.6231	1	1209200	+		83323	31840	58082	58176	92340	92340					0.11490511391002656
VFLTLLHF	8	Unmodified	_VFLTLLHF_					0	0	0		ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;BAIAP2-TBCD|1|fusion;ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENSG00000141556|ENST00000355528|TBCD	ENSG00000141556|ENST00000355528|TBCD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.2561340332031	2	495.294571	988.574589	-0.11147	-5.5209E-05	3.7028	0.001834	3.5913	0.0017787	495.296391895103	64.154	0.50765	63.895	63.565	64.073	-0.25824					21	12	2	0	0	0	0.027866	1	7261	7261		37.028	0	1	162830			83324	5503	58083	58177	92341	92341					0.07984440179234298
VFLVPPAS	8	Unmodified	_VFLVPPAS_					0	0	0			REV__ENSG00000183153|ENST00000578689|GJD3	REV__ENSG00000183153|ENST00000578689|GJD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.7616271972656	2	415.244547	828.47454	0.86911	0.00036089	0.88548	0.00036769	1.7546	0.00072858	415.24491693992087	87.871	0.11664	87.89	87.832	87.948	0.018555					4	2	2	0	0	0	0.027866	1	10996	10996		37.028	22.364	1	84482	+		83325	27546	58084	58178	92342	92342					0.05344202845424206
VFLVQASGF	9	Unmodified	_VFLVQASGF_					0	0	0			REV__ENST00000599652.5_1_19:49969097-49972327:+|nuORF	REV__ENST00000599652.5_1_19:49969097-49972327:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2789611816406	2	484.26601	966.517468	-0.57896	-0.00028037	1.7527	0.00084879	1.1738	0.00056842	484.2668610956416	94.302	0.5845	94.164	93.878	94.463	-0.13779					21	13	2	0	0	0	0.024506	1	11639	11639		16.473	9.2798	1	176820	+		83326	35831	58085	58179	92343	92343					0.03286972902856178
VFLVVLLLI	9	Unmodified	_VFLVVLLLI_					0	0	0			REV__SUSD6|p.G183Wfs*11|1|0.46|ENSG00000100647|chr14:69708763-69708764|-/T|frameshift_variant	REV__SUSD6|p.G183Wfs*11|1|0.46|ENSG00000100647|chr14:69708763-69708764|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.8048095703125	2	514.859547	1027.70454	-0.7746	-0.00039881	-3.8467	-0.0019805	-4.6213	-0.0023793	514.857471863271	56.551	0.58144	56.649	56.435	57.016	0.097897					31	16	3	0	0	0	0.024541	1	6203	6203		21.702	0	1	240050	+		83327	21140	58086	58180	92344	92344					0.19179616458382043
VFLVWLTI	8	Unmodified	_VFLVWLTI_					0	0	0			REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.8060607910156	2	495.804771	989.59499	-0.22031	-0.00010923	3.43	0.0017006	3.2097	0.0015914	495.80636838214787	89.904	1.4064	89.904	89.523	90.929	0					89	33	5	0	0	0	0.95417	1	11363	11363		44.531	3.7529	1	1146200	+		83328	37033	58087	58181	92345	92345					0.09977610839030149
VFLVYLLPL	9	Unmodified	_VFLVYLLPL_					0	0	0		ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7770385742188	2	538.841354	1075.66815	-0.53964	-0.00029078	-3.457	-0.0018628	-3.9967	-0.0021536	538.8393372714705	56.813	0.89035	56.645	56.363	57.253	-0.1672					58	23	4	0	0	0	0.024389	1	6265	6265		39.021	0	1	2824900			83329	15638	58088	58182	92346	92346					0.13334739561673814
VFLVYLLPL	9	Unmodified	_VFLVYLLPL_					0	0	0		ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.776611328125	2	538.841354	1075.66815	-1.4145	-0.00076217	-2.8879	-0.0015561	-4.3024	-0.0023183	539.3418815514849	57.574	0.45938	57.34	57.164	57.624	-0.23363					14	11	2	0	0	0	0.024389	1	6258	6258		39.021	0	1	161110			83330	15638	58088	58182	92347	92347					0.13334739561673814
VFLVYLLPL	9	Unmodified	_VFLVYLLPL_					0	0	0		ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	538.841354	1075.66815	-0.06065	-3.2681E-05	-4.0074	-0.0021593	-4.068	-0.002192	538.8390640449311	56.867	0.69907	56.665	56.365	57.064	-0.20209	-0.0075591	-0.00030632	NaN	39.021	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3047900			83331	15638	58088	58182							0.13334739561673814
VFLVYLLPL	9	Unmodified	_VFLVYLLPL_					0	0	0		ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	ENST00000499291.6_1_12:11709371-11709509:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.841354	1075.66815	-0.59034	-0.0003181	-3.6079	-0.0019441	-4.1983	-0.0022622	538.8392701921168	56.931	1.0202	56.706	56.189	57.209	-0.2248	0.034329	0.00012416	NaN	39.021	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2969400			83332	15638	58088	58182							0.13334739561673814
VFLWNIQV	8	Unmodified	_VFLWNIQV_					0	0	0		L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|85|2|anti-sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|85|2|anti-sense	L1PA6_dup4626|chr12:12411356-12412894:-|1.088162519094923|0.0078869281237918|7.11|501.0|85|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.8035888671875	2	509.789653	1017.56475	0.38173	0.0001946	-0.36812	-0.00018766	0.013613	6.9398E-06	509.78939140914974	83.629	1.1068	83.46	83.162	84.269	-0.16916					65	25	4	0	0	0	0.027866	1	10063	10063		65.803	0	1	909770			83333	17862	58089	58183	92348	92348					0.05667252173839188
VFMFLLGI	8	Unmodified	_VFMFLLGI_					0	0	0			REV__ENST00000580156.1_1_17:29599642-29624196:-|nuORF	REV__ENST00000580156.1_1_17:29599642-29624196:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.27252197265625	2	470.27225	938.529947	-0.81684	-0.00038414	1.1104	0.00052218	0.29354	0.00013805	470.2727082504141	91.182	1.3816	91.182	90.719	92.101	0					75	32	4	0	0	0	1.0241	1	11553	11553		33.493	0	1	4597800	+		83334	35511	58090	58184	92349	92349					0.05822293041535431
VFMLLSNL	8	Oxidation (M)	_VFM(Oxidation (M))LLSNL_		VFM(1)LLSNL		VFM(82)LLSNL	0	0	1		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF;ENST00000583765.1_1_18:67687135-67692051:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7626037597656	2	476.762246	951.50994	1.9818	0.00094486	-1.6919	-0.00080662	0.28996	0.00013824	476.76126309106206	63.976	2.1623	63.976	63.558	65.721	0					187	59	5	0	0	0	0.53523	1	7557	7557		82.305	10.927	1	17568000			83335	8622	58091	58185	92350	92350		359			0.03224497310941388
VFMLLSNL	8	Oxidation (M)	_VFM(Oxidation (M))LLSNL_		VFM(1)LLSNL		VFM(82)LLSNL	0	0	1		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF;ENST00000583765.1_1_18:67687135-67692051:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7622985839844	2	476.762246	951.50994	0.18973	9.0456E-05	-0.042871	-2.0439E-05	0.14686	7.0017E-05	476.7620701585215	64.209	1.8639	63.957	63.553	65.417	-0.2514					140	50	5	0	0	0	0.53523	1	7556	7556		82.305	11.009	1	18540000			83336	8622	58091	58185	92351	92351		359			0.03224497310941388
VFMLLSNL	8	Oxidation (M)	_VFM(Oxidation (M))LLSNL_		VFM(1)LLSNL		VFM(94)LLSNL	0	0	1		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF;ENST00000583765.1_1_18:67687135-67692051:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.7623596191406	2	476.762246	951.50994	1.5106	0.00072018	-1.4551	-0.00069375	0.055441	2.6432E-05	476.7614084089925	63.947	1.984	63.992	63.583	65.567	0.045502					151	54	5	0	0	0	0.42327	1	7473	7473		94.006	17.16	1	21920000			83337	8622	58091	58185	92352	92352		359			0.03224497310941388
VFMLLTLEP	9	Unmodified	_VFMLLTLEP_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.801513671875	2	531.798829	1061.5831	-0.0992	-5.2755E-05	-1.2155	-0.00064638	-1.3147	-0.00069914	531.797912469683	101.33	1.0826	101.21	100.74	101.83	-0.12576					29	25	2	0	0	0	0.023775	1	12545	12545		68.485	8.1907	1	42201			83338	5257	58092	58186	92353	92353					0.05477626033575689
VFMLMKASGG	10	Unmodified	_VFMLMKASGG_					0	0	0			REV__ENSG00000237649|ENST00000428849|KIFC1	REV__ENSG00000237649|ENST00000428849|KIFC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.291259765625	2	520.767006	1039.51946	-0.32327	-0.00016835	-3.0083	-0.0015666	-3.3316	-0.001735	520.7656637012558	65.931	1.3082	65.68	65.108	66.416	-0.25112					59	32	2	0	0	0	0.03519	1	7541	7541		42.396	14.514	1	469310	+		83339	28944	58093	58187	92354	92354					0.0012794232482065127
VFMSSTTSAS	10	Unmodified	_VFMSSTTSAS_					0	0	0		nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1	nc|ENSG00000014123|O94874-2|UFL1	nc|ENSG00000014123|O94874-2|UFL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.23223876953125	2	509.231507	1016.44846	-0.014216	-7.2395E-06	-3.312	-0.0016866	-3.3262	-0.0016938	509.22926876565225	104.97	0.48813	104.97	104.63	105.12	-0.0015945					21	16	3	0	0	0	1.089	1	13403	13403		34.173	5.023	1	51781			83340	921	58094	58188	92355	92355					-0.05910479179021877
VFNILCLKD	9	Unmodified	_VFNILCLKD_					0	0	0		ENST00000453258.6_2_10:97626149-97626437:+|nuORF	ENST00000453258.6_2_10:97626149-97626437:+|nuORF	ENST00000453258.6_2_10:97626149-97626437:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.7986450195312	2	532.794078	1063.5736	-0.19956	-0.00010632	-0.2543	-0.00013549	-0.45386	-0.00024181	533.2963692057974	98.766	0.75014	98.776	98.607	99.357	0.010239					21	16	2	0	0	0	0.02435	1	12591	12591		51.335	3.4199	1	32230			83341	14544	58095	58189	92356	92356					0.044358577480352324
VFNLINDPL	9	Unmodified	_VFNLINDPL_					0	0	0			REV__ENSG00000168758|ENST00000305476|SEMA4C	REV__ENSG00000168758|ENST00000305476|SEMA4C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3045654296875	2	522.78985	1043.56515	0.27606	0.00014432	0.14145	7.3948E-05	0.41751	0.00021827	522.7897435731371	89.387	0.41725	89.249	89.028	89.445	-0.13762					14	9	2	0	0	0	0.024323	1	10929	10929		35.618	0	1	89024	+		83342	26288	58096	58190	92357	92357					0.04510627103036313
VFNNKNTYTI	10	Unmodified	_VFNNKNTYTI_					0	0	0			REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	607.3148193359375	2	607.31422	1212.61389	-0.70277	-0.0004268	0.3968	0.00024098	-0.30597	-0.00018582	607.3145560787636	66.823	0.40723	66.541	66.432	66.839	-0.28148					19	11	2	0	0	0	0.74632	1	7929	7929		64.207	4.089	1	790270	+		83343	30323	58097	58191	92358	92358					0.016084956721442722
VFNNKNTYTI	10	Unmodified	_VFNNKNTYTI_					0	0	0			REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	607.31422	1212.61389	-1.0797	-0.00065573	1.1761	0.00071427	0.096393	5.8541E-05	607.3146810032472	66.506	0.34494	66.506	66.41	66.755	0	-0.019666	0.0004069	NaN	64.207	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642740	+		83344	30323	58097	58191							0.016084956721442722
VFNNKNTYTI	10	Unmodified	_VFNNKNTYTI_					0	0	0			REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	607.31422	1212.61389	-0.70277	-0.0004268	0.3968	0.00024098	-0.30597	-0.00018582	607.3145560787636	66.823	0.40723	66.541	66.432	66.839	-0.28148	0.015669	-0.00053968	NaN	64.207	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790270	+		83345	30323	58097	58191							0.016084956721442722
VFNNKNTYTI	10	Unmodified	_VFNNKNTYTI_					0	0	0			REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	607.31422	1212.61389	-1.4286	-0.0008676	1.2676	0.00076984	-0.16098	-9.7766E-05	607.3151336006141	66.499	0.4698	66.529	66.435	66.905	0.030106	0.0039969	0.00051804	NaN	64.207	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713520	+		83346	30323	58097	58191							0.016084956721442722
VFNVIKPTQ	9	Unmodified	_VFNVIKPTQ_					0	0	0			REV__nc|ENSG00000077238|P24394-3|IL4R	REV__nc|ENSG00000077238|P24394-3|IL4R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2577514648438	2	523.305667	1044.59678	-1.0922	-0.00057154	-0.93926	-0.00049152	-2.0314	-0.0010631	523.3063501053205	23.997	0.34736	23.95	23.741	24.088	-0.047146					9	7	2	0	0	0	0.024477	1	964	964		20.947	0	1	30419	+		83347	20584	58098	58192	92359	92359					0.0762661985700106
VFPAVPSVPST	11	Unmodified	_VFPAVPSVPST_					0	0	0		ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	ENSG00000116786|ENST00000375799|PLEKHM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.2801513671875	2	550.802957	1099.59136	0.060845	3.3513E-05	-0.28197	-0.00015531	-0.22113	-0.0001218	550.8023509443753	72.57	0.53345	72.58	72.411	72.944	0.0097733					18	12	2	0	0	0	0.024747	1	8778	8778		31.53	2.3598	1	122560			83348	3577	58099	58193	92360	92360					0.04554896274521525
VFPCPRTRS	9	Unmodified	_VFPCPRTRS_					0	0	0		ENST00000510554.1_2_17:48556455-48556545:+|nuORF	ENST00000510554.1_2_17:48556455-48556545:+|nuORF	ENST00000510554.1_2_17:48556455-48556545:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.29248046875	2	531.779293	1061.54403	-1.3099	-0.0006966	-2.4589	-0.0013076	-3.7688	-0.0020042	531.7777540373387	61.899	0.3071	61.721	61.536	61.843	-0.17782					10	7	2	0	0	0	0.024487	1	6944	6944		24.203	0	1	57955			83349	15825	58100	58194	92361	92361					0.015723385225328457
VFPLKGDQKL	10	Unmodified	_VFPLKGDQKL_					0	0	0			REV__ENST00000470507.1_1_2:9546965-9548358:-|nuORF	REV__ENST00000470507.1_1_2:9546965-9548358:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.8399658203125	2	572.839874	1143.66519	-0.26213	-0.00015016	0.059588	3.4134E-05	-0.20254	-0.00011602	572.8397344156838	76.614	0.71848	76.445	76.181	76.899	-0.16854					41	16	3	0	0	0	1.0122	1	9096	9096		44.377	0.26039	1	534200	+		83350	32857	58101	58195	92362	92362					0.09910864436847078
VFPNIQNPD	9	Unmodified	_VFPNIQNPD_					0	0	0		chr14:22507723-22547506|257|13.0|0.0|20.31|+|2|TRAJ34,TRAC|1	chr14:22507723-22547506|257|13.0|0.0|20.31|+|2|TRAJ34,TRAC|1	chr14:22507723-22547506|257|13.0|0.0|20.31|+|2|TRAJ34,TRAC|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3018188476562	2	522.261456	1042.50836	0.070407	3.6771E-05	-3.7132	-0.0019393	-3.6428	-0.0019025	522.2598124681977	61.636	0.94559	61.409	60.821	61.766	-0.22663					56	24	3	0	0	0	0.02435	1	7021	7021		51.335	10.557	1	528110			83351	336	58102	58196	92363	92363					-0.011194204534604069
VFPSEQLCL	9	Unmodified	_VFPSEQLCL_					0	0	0			REV__ENST00000574946.5_1_17:6026260-6026440:+|nuORF	REV__ENST00000574946.5_1_17:6026260-6026440:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.2815551757812	2	518.26261	1034.51067	7.7928E-06	4.0387E-09	0.0055386	2.8704E-06	0.0055464	2.8745E-06	518.2624818411751	48.469	0.90014	48.287	47.983	48.883	-0.18206					47	24	3	0	0	0	0.024523	1	4825	4825		21.96	0	1	2219900	+		83352	35453	58103	58197	92364	92364					-0.0052070804001687065
VFPTSASVQV	10	Unmodified	_VFPTSASVQV_					0	0	0		ENSG00000108510|ENST00000397786|MED13;ENST00000582786.1_1_17:60032737-60033083:-|nuORF	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7809448242188	2	517.779482	1033.54441	-0.10717	-5.5492E-05	2.92	0.0015119	2.8128	0.0014564	517.7809343172893	41.938	1.1374	41.938	41.505	42.642	0					93	32	5	0	0	0	0.31896	1	3825	3825		107.01	7.6326	1	9989100			83353	2905	58104	58198	92365	92365					0.028980367233771176
VFPTSASVQV	10	Unmodified	_VFPTSASVQV_					0	0	0		ENSG00000108510|ENST00000397786|MED13;ENST00000582786.1_1_17:60032737-60033083:-|nuORF	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7805786132812	2	517.779482	1033.54441	-1.2376	-0.00064079	3.9131	0.0020261	2.6755	0.0013853	517.7812906055916	44.314	2.5096	44.314	42.569	45.079	0					177	70	4	0	0	0	0.21865	2	4221	4221;4245		118.74	9.2647	1	4913000			83354	2905	58104	58198	92366;92367	92366					0.028980367233771176
VFPTSASVQV	10	Unmodified	_VFPTSASVQV_					0	0	0		ENSG00000108510|ENST00000397786|MED13;ENST00000582786.1_1_17:60032737-60033083:-|nuORF	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7808227539062	2	517.779482	1033.54441	-0.69299	-0.00035882	3.317	0.0017175	2.624	0.0013586	517.7810779074306	44.264	2.4861	44.301	42.652	45.138	0.0369					160	69	3	0	0	0	0.31896	1	4184	4184		107.01	8.4255	1	4634400			83355	2905	58104	58198	92368	92368					0.028980367233771176
VFPTSASVQV	10	Unmodified	_VFPTSASVQV_					0	0	0		ENSG00000108510|ENST00000397786|MED13;ENST00000582786.1_1_17:60032737-60033083:-|nuORF	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7846069335938	2	517.779482	1033.54441	-0.873	-0.00045202	3.2733	0.0016948	2.4003	0.0012428	517.7810853631835	44.449	3.1348	44.345	42.935	46.07	-0.10468					164	85	2	0	0	0	0.40067	2	4159	4159;4171		98.629	24.374	1	2000900			83356	2905	58104	58198	92369;92370	92369					0.028980367233771176
VFPTSASVQV	10	Unmodified	_VFPTSASVQV_					0	0	0		ENSG00000108510|ENST00000397786|MED13;ENST00000582786.1_1_17:60032737-60033083:-|nuORF	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	517.779482	1033.54441	-0.56394	-0.000292	3.0665	0.0015878	2.5025	0.0012958	517.780877628135	44.55	3.1907	44.306	42.832	46.023	-0.2444					163	86	3	0	0	0	0.57594	1	4176	4176		79.713	0.26157	1	1985000			83357	2905	58104	58198	92371	92371					0.028980367233771176
VFPVVMYF	8	Unmodified	_VFPVVMYF_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1;nc|ENSG00000121446|A5PLK6-4|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3029479980469	2	501.261882	1000.50921	-0.25268	-0.00012666	0.01883	9.4386E-06	-0.23385	-0.00011722	501.2615833898607	25.312	0.67596	25.141	24.781	25.457	-0.17078					35	15	4	0	0	0	0.027866	1	1217	1217		33.493	0	1	235460			83358	3871	58105	58199	92372	92372					0.008977026618822492
VFQEDDFLL	9	Unmodified	_VFQEDDFLL_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.2765502929688	2	563.276772	1124.53899	-0.073824	-4.1583E-05	-0.5296	-0.00029831	-0.60342	-0.00033989	563.2764708422711	81.861	3.0713	81.73	81.298	84.369	-0.13075					222	72	4	0	0	0	0.15029	1	10192	10192		99.375	3.1845	1	21913000	+		83359	24114	58106	58200	92373	92373					-0.01829686859082358
VFQEDDFLL	9	Unmodified	_VFQEDDFLL_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.2767333984375	2	563.276772	1124.53899	0.20952	0.00011802	-0.76473	-0.00043075	-0.5552	-0.00031273	563.2764196630745	81.846	2.6296	81.653	81.05	83.679	-0.19334					207	61	5	0	0	0	0.20967	2	9849	9849;9861		87.754	5.4493	1	5941100	+		83360	24114	58106	58200	92374;92375	92374					-0.01829686859082358
VFQEDDFLL	9	Unmodified	_VFQEDDFLL_					0	0	0			REV__ENSG00000141642|ENST00000269466|ELAC1	REV__ENSG00000141642|ENST00000269466|ELAC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.2762451171875	2	563.276772	1124.53899	-0.78978	-0.00044486	0.30193	0.00017007	-0.48785	-0.00027479	563.2769492546245	81.784	2.2277	81.642	81.151	83.379	-0.14248					171	51	5	0	0	0	0.12602	1	9828	9828		104.75	16.992	1	6248000	+		83361	24114	58106	58200	92376	92376					-0.01829686859082358
VFQEVSVLN	9	Unmodified	_VFQEVSVLN_					0	0	0		ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7836303710938	2	517.779482	1033.54441	-0.30217	-0.00015646	3.799	0.0019671	3.4969	0.0018106	517.7810786490392	42.254	0.98607	42.022	41.658	42.644	-0.23186					77	26	5	0	0	0	0.17822	1	3775	3775		93.195	2.5946	1	3958600			83362	7481	58107	58201	92377	92377					0.02898036723399855
VFQHLGNL	8	Unmodified	_VFQHLGNL_					0	0	0		ENSG00000172061|ENST00000347624|LRRC15;nc|ENSG00000172061|Q8TF66-2|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2789611816406	2	464.255977	926.497401	0.16661	7.7349E-05	1.4337	0.0006656	1.6003	0.00074295	464.2561776126063	52.31	0.57296	52.162	51.915	52.488	-0.14735					28	14	3	0	0	0	0.027866	1	5541	5541		35.201	6.0512	1	260880			83363	8238	58108	58202	92378	92378					0.031212219629082938
VFQKGETTI	9	Unmodified	_VFQKGETTI_					0	0	0		ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.7807312011719	2	511.779482	1021.54441	-0.40689	-0.00020824	1.7948	0.00091853	1.3879	0.00071029	511.7803163207234	92.989	1.0225	92.989	92.665	93.687	0					52	23	3	0	0	0	0.62163	1	11820	11820		51.335	5.3632	1	877000			83364	16409	58109	58203	92379	92379					0.034500367233818
VFQLGSILH	9	Unmodified	_VFQLGSILH_					0	0	0		L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|286|2|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|286|2|anti-sense	L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|286|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.2943115234375	2	507.292559	1012.57057	-0.19931	-0.00010111	-4.2576	-0.0021598	-4.4569	-0.002261	507.29028140352375	21.325	0.92149	21.397	21.057	21.978	0.071487					52	18	4	0	0	0	0.77768	1	594	594		40.778	1.5253	1	1018300			83365	17843	58110	58204	92380	92380					0.06478350685517853
VFQLHLVHW	9	Unmodified	_VFQLHLVHW_					0	0	0		ENST00000496188.1_1_X:15792412-15793509:+|nuORF	ENST00000496188.1_1_X:15792412-15793509:+|nuORF	ENST00000496188.1_1_X:15792412-15793509:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.3439331054688	2	589.827101	1177.63965	0.85044	0.00050161	1.232	0.00072665	2.0824	0.0012283	589.8279236773267	90.512	0.25217	90.525	90.409	90.661	0.013443					7	5	2	0	0	0	0.024466	1	11353	11353		33.516	12.569	1	38918			83366	15561	58111	58205	92381	92381					0.057934347050832
VFQNIELKV	9	Unmodified	_VFQNIELKV_					0	0	0		ENST00000477941.2_1_1:144952199-144955307:-|nuORF	ENST00000477941.2_1_1:144952199-144955307:-|nuORF	ENST00000477941.2_1_1:144952199-144955307:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3156127929688	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.48817	1	11437	11437		60.118	1.3363	1	12792000			83367	15123	58112	58206	92382	92382					0.08222889028479585
VFQPRKVSV	9	Unmodified	_VFQPRKVSV_					0	0	0		ENST00000537376.1_1_12:121000762-121000978:+|nuORF	ENST00000537376.1_1_12:121000762-121000978:+|nuORF	ENST00000537376.1_1_12:121000762-121000978:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7611694335938	2	530.319109	1058.62366	-0.52892	-0.0002805	3.0294	0.0016066	2.5005	0.0013261	530.3205837409971	45.472	0.38709	45.219	44.905	45.292	-0.25252					16	10	2	0	0	0	0.024541	1	4271	4271		30.504	7.4612	1	168720			83368	16372	58113	58207	92383	92383					0.09669728468179528
VFQRIKFLVP	10	Unmodified	_VFQRIKFLVP_					0	0	0			REV__ENST00000241527.10_1_2:242028394-242028526:-|nuORF	REV__ENST00000241527.10_1_2:242028394-242028526:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.9035949707031	3	416.260531	1245.75976	-0.15557	-6.4756E-05	-2.7422	-0.0011415	-2.8978	-0.0012062	416.2591489055405	31.77	0.36653	31.532	31.372	31.738	-0.23833					17	8	3	0	0	0	0.03519	1	2154	2154		28.081	0	1	60861	+		83369	29451	58114	58208	92384	92384					0.14671422978858573
VFQRPRVRYG	10	Unmodified	_VFQRPRVRYG_					0	0	0		ENSG00000181610|ENST00000313608|MRPS23;ENST00000579768.1_1_17:55926599-55927356:-|nuORF	ENSG00000181610|ENST00000313608|MRPS23	ENSG00000181610|ENST00000313608|MRPS23	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	639.3626098632812	2	639.364913	1276.71527	0.083932	5.3663E-05	-2.6837	-0.0017159	-2.5998	-0.0016622	639.3630283090524	109.99	0.45077	110	109.83	110.28	0.0059204					54	19	4	0	0	0	1.1307	1	13871	13871		26.693	1.1189	1	2199500			83370	9052	58115	58209	92385	92385					0.08798411885368296
VFQVFRNI	8	Unmodified	_VFQVFRNI_					0	0	0		ENST00000491811.5_1_1:68608485-68620847:-|nuORF;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	ENST00000491811.5_1_1:68608485-68620847:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7685852050781	2	511.792727	1021.5709	0.28159	0.00014412	-4.3225	-0.0022122	-4.041	-0.0020681	512.294086470293	69.229	0.15034	68.936	68.86	69.01	-0.29291					5	3	2	0	0	0	0.027866	1	8305	8305		12.959	0	1	35661			83371	3571	58116	58210	92386	92386					0.06097770405369829
VFQVFVLSL	9	Unmodified	_VFQVFVLSL_					0	0	0			REV__ENST00000496384.6_2_7:140426169-140434419:-|nuORF	REV__ENST00000496384.6_2_7:140426169-140434419:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2779541015625	2	526.312961	1050.61137	0.09691	5.1005E-05	2.7385	0.0014413	2.8354	0.0014923	526.3142322864861	85.741	1.7919	85.741	84.422	86.214	0					91	42	3	0	0	0	0.024457	1	10602	10602		21.96	4.5949	1	209570	+		83372	33825	58117	58211	92387	92387					0.08808692005163721
VFQVPHIGR	9	Unmodified	_VFQVPHIGR_					0	0	0		ENST00000531920.6_2_11:93528046-93528097:+|nuORF	ENST00000531920.6_2_11:93528046-93528097:+|nuORF	ENST00000531920.6_2_11:93528046-93528097:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.8556518554688	2	526.803626	1051.5927	-0.10204	-5.3755E-05	-1.228	-0.00064693	-1.3301	-0.00070068	526.802869917496	76.413	0.95818	76.162	75.905	76.863	-0.25162					51	22	4	0	0	0	0.024457	1	9152	9152		15.642	0	1	917820			83373	16274	58118	58212	92388	92388					0.06896575153950835
VFRDILTAVQ	10	Unmodified	_VFRDILTAVQ_					0	0	0			REV__nc|ENSG00000102854|Q13421-4|MSLN	REV__nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.3040771484375	2	581.334956	1160.65536	-0.93943	-0.00054612	-1.8789	-0.0010923	-2.8184	-0.0016384	581.333780614243	29.805	0.52822	29.883	29.646	30.174	0.078346					33	12	4	0	0	0	0.03519	1	1847	1847		51.335	8.9393	1	338170	+		83374	21331	58119	58213	92389	92389					0.08145676431468019
VFRGLFII	8	Unmodified	_VFRGLFII_					0	0	0		ENST00000466174.5_1_19:12907897-12910877:-|nuORF	ENST00000466174.5_1_19:12907897-12910877:-|nuORF	ENST00000466174.5_1_19:12907897-12910877:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.777099609375	2	482.802563	963.590573	-0.4512	-0.00021784	-4.1836	-0.0020198	-4.6348	-0.0022377	482.8002708815008	44.695	0.76373	44.732	44.443	45.207	0.0369					43	21	3	0	0	0	0.027866	1	4256	4256		29.842	9.3597	1	417560			83375	14804	58120	58214	92390	92390					0.10732146416137311
VFRKMLFPI	9	Unmodified	_VFRKMLFPI_					0	0	0		ENSG00000171202|ENST00000304511|TMEM126A;nc|ENSG00000171202|Q9H061-2|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	ENSG00000171202|ENST00000304511|TMEM126A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.843017578125	2	575.843905	1149.67326	-0.59889	-0.00034487	-1.031	-0.00059368	-1.6299	-0.00093855	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.4855	1	10857	10857		60.294	0.17569	1	2151700			83376	8126	58121	58215	92391	92391					0.10440720152655558
VFRLQVLVL	9	Unmodified	_VFRLQVLVL_					0	0	0		ENST00000526148.5_2_11:10829311-10829500:-|nuORF	ENST00000526148.5_2_11:10829311-10829500:-|nuORF	ENST00000526148.5_2_11:10829311-10829500:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.2722778320312	2	543.855327	1085.6961	-1.2163	-0.00066148	0.81956	0.00044572	-0.39671	-0.00021575	543.8557054414416	55.549	0.46506	55.392	55.178	55.643	-0.15656					21	12	2	0	0	0	0.024535	1	5940	5940		3.41	0	1	199910			83377	16114	58122	58216	92392	92392					0.1566806254174935
VFRLRKWI	8	Unmodified	_VFRLRKWI_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000573175.1_1_17:4451225-4453465:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.3572998046875	2	559.353286	1116.69202	-1.0152	-0.00056787	4.1952	0.0023466	3.18	0.0017787	559.3556216029515	106.16	0.37318	106.02	105.81	106.18	-0.1328					23	14	2	0	0	0	0.85409	1	13217	13217		54.765	16.953	1	196700			83378	4599	58123	58217	92393	92393					0.13834017838712498
VFRNSLGLI	9	Unmodified	_VFRNSLGLI_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8038024902344	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	0.64155	1	10814	10814		50.025	0	1	2572600			83379	2157	58124	58218	92394	92394					0.08902039576844345
VFRRNLLF	8	Unmodified	_VFRRNLLF_					0	0	0			REV__ENSG00000103489|ENST00000261381|XYLT1	REV__ENSG00000103489|ENST00000261381|XYLT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2882080078125	2	532.821818	1063.62908	0.1049	5.5891E-05	-1.3748	-0.00073253	-1.2699	-0.00067664	532.8208592153173	77.079	0.40182	76.827	76.571	76.972	-0.25162					22	9	4	0	0	0	0.027866	1	9188	9188		44.531	0	1	379600	+		83380	21388	58125	58219	92395	92395					0.09981452050647022
VFRTGDVLL	9	Unmodified	_VFRTGDVLL_					0	0	0			REV__ENSG00000112078|ENST00000373731|KCTD20	REV__ENSG00000112078|ENST00000373731|KCTD20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7872619628906	2	510.297842	1018.58113	-0.7024	-0.00035843	-0.18843	-9.6156E-05	-0.89083	-0.00045459	510.29747201459014	60.691	0.63774	60.477	60.196	60.834	-0.21339					46	16	4	0	0	0	0.024292	1	6930	6930		58.782	7.4465	1	2595100	+		83381	21964	58126	58220	92396	92396					0.07258333339962064
VFRTILPKP	9	Unmodified	_VFRTILPKP_					0	0	0			REV__nc|ENSG00000099250|O14786-3|NRP1	REV__nc|ENSG00000099250|O14786-3|NRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7669677734375	2	535.839677	1069.6648	-1.1022	-0.00059061	-3.4866	-0.0018683	-4.5888	-0.0024589	535.837714012462	30.375	0.75757	30.197	29.909	30.667	-0.17818					43	17	4	0	0	0	0.024389	1	1925	1925		35.152	3.1972	1	1420000	+		83382	20996	58127	58221	92397	92397					0.13275489507645943
VFRVHIPE	8	Unmodified	_VFRVHIPE_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.3167419433594	2	498.784902	995.55525	-1.0419	-0.00051968	0.81983	0.00040892	-0.22205	-0.00011076	498.78493580297203	79.55	0.12354	79.378	79.275	79.399	-0.17226					4	2	2	0	0	0	0.027866	1	9822	9822		24.203	0	1	27976			83383	2280	58128	58222	92398	92398					0.05729483888319464
VFRVLVYVV	9	Unmodified	_VFRVLVYVV_					0	0	0		ENSG00000188910|ENST00000373366|GJB3	ENSG00000188910|ENST00000373366|GJB3	ENSG00000188910|ENST00000373366|GJB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.8416137695312	2	547.342052	1092.66955	-0.64128	-0.000351	-1.1336	-0.00062049	-1.7749	-0.00097149	547.3417784949847	100.23	0.29428	100.24	100.1	100.39	0.010109					11	6	3	0	0	0	0.024541	1	12784	12784		13.775	0	1	117590			83384	9766	58129	58223	92399	92399					0.12692373650406807
VFRVRAIN	8	Unmodified	_VFRVRAIN_					0	0	0		ENSG00000101605|ENST00000356443|MYOM1;nc|ENSG00000101605|P52179-2|MYOM1;MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	ENSG00000101605|ENST00000356443|MYOM1	ENSG00000101605|ENST00000356443|MYOM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7970275878906	2	487.798343	973.582134	-1.0216	-0.00049831	-1.6099	-0.00078533	-2.6315	-0.0012836	487.7974619641112	75.539	1.6042	75.539	75.155	76.759	0					110	41	4	0	0	0	0.78609	1	9252	9252		60.294	0	1	8547400			83385	2339	58130	58224	92400	92400					0.0942859249950061
VFRVRAIN	8	Unmodified	_VFRVRAIN_					0	0	0		ENSG00000101605|ENST00000356443|MYOM1;nc|ENSG00000101605|P52179-2|MYOM1;MYOM1|p.I1410Nfs*18|1|0.13|ENSG00000101605|chr18:3086060-3086061|-/T|frameshift_variant	ENSG00000101605|ENST00000356443|MYOM1	ENSG00000101605|ENST00000356443|MYOM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.797607421875	2	487.798343	973.582134	-0.47015	-0.00022934	-2.0389	-0.00099456	-2.509	-0.0012239	487.7972225991239	75.737	1.5239	75.492	75.191	76.715	-0.24455					98	39	4	0	0	0	0.97924	1	9264	9264		40.573	0	1	9873000			83386	2339	58130	58224	92401	92401					0.0942859249950061
VFRVSKEP	8	Unmodified	_VFRVSKEP_					0	0	0			REV__COBL|p.L157F|1|0.33|ENSG00000106078|chr7:51191064-51191064|C/A|missense_variant	REV__COBL|p.L157F|1|0.33|ENSG00000106078|chr7:51191064-51191064|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.73223876953125	2	481.276909	960.539266	-0.26154	-0.00012587	0.78025	0.00037552	0.51871	0.00024964	481.2765277269191	56.883	0.20439	56.979	56.846	57.051	0.095306					8	5	2	0	0	0	0.027866	1	6301	6301		35.618	0	1	49690	+		83387	19508	58131	58225	92402	92402					0.057417776514284924
VFSACSVPVV	10	Unmodified	_VFSACSVPVV_					0	0	0		nc|ENSG00000204852|Q2MV58-5|TCTN1;ENST00000552762.5_1_12:111057717-111064296:+|nuORF;ENST00000464809.5_1_12:111052207-111065748:+|nuORF;ENST00000478122.6_1_12:111052207-111066834:+|nuORF;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	nc|ENSG00000204852|Q2MV58-5|TCTN1	nc|ENSG00000204852|Q2MV58-5|TCTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.27459716796875	2	504.265153	1006.51575	-1.2349	-0.00062272	-2.4646	-0.0012428	-3.6995	-0.0018655	504.26383836965744	91.243	1.0151	91.243	90.887	91.902	0					51	23	4	0	0	0	0.03519	1	11549	11549		63.306	20.91	1	1121700			83388	18666	58132	58226	92403	92403					0.012755958225966424
VFSACSVPVV	10	Unmodified	_VFSACSVPVV_					0	0	0		nc|ENSG00000204852|Q2MV58-5|TCTN1;ENST00000552762.5_1_12:111057717-111064296:+|nuORF;ENST00000464809.5_1_12:111052207-111065748:+|nuORF;ENST00000478122.6_1_12:111052207-111066834:+|nuORF;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	nc|ENSG00000204852|Q2MV58-5|TCTN1	nc|ENSG00000204852|Q2MV58-5|TCTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2742614746094	2	504.265153	1006.51575	-0.43866	-0.0002212	-3.5673	-0.0017989	-4.006	-0.0020201	504.2632599374226	91.279	0.79842	91.266	90.993	91.791	-0.012383					39	18	4	0	0	0	0.03519	1	11537	11537		44.117	0	1	1067300			83389	18666	58132	58226	92404	92404					0.012755958225966424
VFSIIKRPSV	10	Unmodified	_VFSIIKRPSV_					0	0	0			REV__ENSG00000179919|ENST00000326258|OR10A7	REV__ENSG00000179919|ENST00000326258|OR10A7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	573.2788696289062	2	573.355691	1144.69683	-0.33953	-0.00019467	-0.40326	-0.00023121	-0.74279	-0.00042588	573.3553471914879	77.552	0.42613	77.39	77.268	77.694	-0.16196					11	9	2	0	0	0	0.03519	1	9228	9228		29.15	2.4566	1	94502	+		83390	27302	58133	58227	92405	92405					0.13026857190789087
VFSITLKTRAN	11	Unmodified	_VFSITLKTRAN_					0	0	0		ENST00000581398.1_1_4:1245665-1246076:+|nuORF	ENST00000581398.1_1_4:1245665-1246076:+|nuORF	ENST00000581398.1_1_4:1245665-1246076:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	625.3662719726562	2	625.366787	1248.71902	0.43075	0.00026937	-0.56026	-0.00035037	-0.12952	-8.0997E-05	625.3662978121002	105.37	0.52142	105.2	105.07	105.59	-0.16484					36	14	3	0	0	0	1.0292	1	13142	13142		30.318	0	1	2623700			83391	17162	58134	58228	92406	92406					0.10461036868582596
VFSKRLEIN	9	Unmodified	_VFSKRLEIN_					0	0	0		ENST00000442952.1_1_10:121664067-121664139:+|nuORF	ENST00000442952.1_1_10:121664067-121664139:+|nuORF	ENST00000442952.1_1_10:121664067-121664139:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.2894897460938	2	553.321848	1104.62914	0.13313	7.3666E-05	-2.6779	-0.0014817	-2.5448	-0.0014081	553.3217932539179	41.68	0.35656	41.68	41.469	41.825	0					12	9	2	0	0	0	0.024477	1	3785	3785		20.947	0	1	60938			83392	14390	58135	58229	92407	92407					0.08101407260005544
VFSNLFLI	8	Unmodified	_VFSNLFLI_					0	0	0			REV__ENST00000312275.9_1_3:157296100-157296295:+|nuORF	REV__ENST00000312275.9_1_3:157296100-157296295:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.306884765625	2	476.778754	951.542954	-0.4019	-0.00019162	0.096593	4.6054E-05	-0.30531	-0.00014556	476.7787081274222	64.46	0.3462	64.205	63.999	64.346	-0.25563					14	8	2	0	0	0	0.027866	1	7297	7297		25.45	0	1	90567	+		83393	30218	58136	58230	92408	92408					0.06524447425283597
VFSPRPSLL	9	Unmodified	_VFSPRPSLL_					0	0	0			REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3021545410156	2	508.300384	1014.58622	-0.034944	-1.7762E-05	3.1468	0.0015995	3.1118	0.0015818	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.2508	1	6160	6160		82.241	7.9855	1	8817200	+		83394	29751	58137	58231	92409	92409					0.07950637202577582
VFSPRPSLL	9	Unmodified	_VFSPRPSLL_					0	0	0			REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.30169677734375	2	508.300384	1014.58622	-0.88652	-0.00045062	3.9722	0.0020191	3.0857	0.0015685	508.3023500786697	55.676	1.7745	55.774	54.66	56.435	0.098015					108	39	3	0	0	0	0.32811	1	6106	6106		71.877	0.58177	1	9000800	+		83395	29751	58137	58231	92410	92410					0.07950637202577582
VFSQLMPVN	9	Oxidation (M)	_VFSQLM(Oxidation (M))PVN_		VFSQLM(1)PVN		VFSQLM(99)PVN	0	0	1		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.7662353515625	2	525.76806	1049.52157	-0.95147	-0.00050025	0.75484	0.00039687	-0.19663	-0.00010338	525.7683466237007	78.96	0.78945	78.96	78.658	79.447	0					43	18	3	0	0	0	0.15366	1	9798	9798		98.629	21.855	1	768140			83396	2231	58138	58232	92411	92411		85			-0.0012130566574342083
VFSRILTLN	9	Unmodified	_VFSRILTLN_					0	0	0			REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.816650390625	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.89441	1	10894	10894		32.812	3.6629	1	3741200	+		83397	23411	58139	58233	92412	92412					0.09498308748356976
VFSRSPIN	8	Unmodified	_VFSRSPIN_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.27911376953125	2	460.253434	918.492316	0.75069	0.00034551	2.5318	0.0011653	3.2825	0.0015108	460.2532161001453	71.076	0.64585	70.862	70.651	71.297	-0.21425					18	14	2	0	0	0	0.027866	1	8271	8271		51.335	1.8939	1	103930			83398	9097	58140	58234	92413	92413					0.029809181002974583
VFSWLLPL	8	Unmodified	_VFSWLLPL_					0	0	0			REV__ENST00000263981.9_1_4:153273802-153273886:-|nuORF	REV__ENST00000263981.9_1_4:153273802-153273886:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.79119873046875	2	487.789121	973.56369	0.56547	0.00027583	2.4795	0.0012095	3.0449	0.0014853	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	0.95417	1	9977	9977		44.531	2.1349	1	2408700	+		83399	29704	58141	58235	92414	92414					0.0758503780494948
VFTEPNLKS	9	Unmodified	_VFTEPNLKS_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7803344726562	2	517.779482	1033.54441	-1.2376	-0.00064079	3.9131	0.0020261	2.6755	0.0013853	517.7812906055916	44.314	2.5096	44.314	42.569	45.079	0					177	70	4	0	0	0	0.31037	1	4259	4259		74.255	1.3758	1	4913000	+		83400	28815	58142	58236	92415	92415					0.028980367233543802
VFTGFCNELN	10	Unmodified	_VFTGFCNELN_					0	0	0			REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	572.2623291015625	2	572.260599	1142.50665	-0.19531	-0.00011177	3.0384	0.0017388	2.8431	0.001627	572.2621887533759	43.036	1.123	43.066	42.759	43.882	0.030823					65	30	3	0	0	0	0.61732	1	3947	3947		75.043	5.4157	1	4217100	+		83401	30885	58143	58237	92416	92416					-0.05890797533720615
VFTHFEVI	8	Unmodified	_VFTHFEVI_					0	0	0			REV__CLCA2|p.I345F|1|0.08|ENSG00000137975|chr1:86438936-86438936|A/T|missense_variant	REV__CLCA2|p.I345F|1|0.08|ENSG00000137975|chr1:86438936-86438936|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2652282714844	2	496.26601	990.517468	-0.2568	-0.00012744	-1.1881	-0.00058962	-1.4449	-0.00071706	496.26542763132267	37.219	3.0763	37.156	35.942	39.018	-0.063389					158	84	2	0	0	0	0.71717	1	3037	3037		65.897	3.79	1	8069400	+		83402	19490	58144	58238	92417	92417					0.021829729028581824
VFTHFEVI	8	Unmodified	_VFTHFEVI_					0	0	0			REV__CLCA2|p.I345F|1|0.08|ENSG00000137975|chr1:86438936-86438936|A/T|missense_variant	REV__CLCA2|p.I345F|1|0.08|ENSG00000137975|chr1:86438936-86438936|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.26544189453125	2	496.26601	990.517468	-0.24536	-0.00012176	-1.2444	-0.00061756	-1.4898	-0.00073933	496.26541624758113	37.364	3.0166	37.396	36.127	39.143	0.032269					163	82	2	0	0	0	0.71717	1	2981	2981		65.897	2.5912	1	8318800	+		83403	19490	58144	58238	92418	92418					0.021829729028581824
VFTKHPEK	8	Unmodified	_VFTKHPEK_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.2782897949219	2	493.276909	984.539266	-0.3339	-0.00016471	3.6147	0.001783	3.2808	0.0016183	493.2784954520519	20.146	1.7381	19.978	19.669	21.407	-0.16774					95	35	3	0	0	0	0.96769	1	539	539		42.396	3.59	1	867630	+		83404	27045	58145	58239	92419	92419					0.04637777651419128
VFTLITTT	8	Unmodified	_VFTLITTT_					0	0	0			REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	REV__ADGRG4|p.M2834Sfs*5|1|0.05|ENSG00000156920|chrX:136400042-136400042|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	448.2589111328125	2	448.260394	894.506234	-0.21973	-9.8495E-05	-3.0208	-0.0013541	-3.2406	-0.0014526	448.2589085096466	89.199	1.7144	89.071	88.532	90.246	-0.12774					103	40	5	0	0	0	1.0133	1	10912	10912		35.201	0	1	9247200	+		83405	19076	58146	58240	92420	92420					0.05476150808692637
VFTLTKQLN	9	Unmodified	_VFTLTKQLN_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.310791015625	2	532.310949	1062.60735	0.31832	0.00016945	0.58669	0.0003123	0.90501	0.00048175	532.310915437083	70.756	0.92995	70.542	70.406	71.336	-0.21425					30	22	2	0	0	0	0.26966	1	8243	8243		79.713	18.741	1	859060			83406	10174	58147	58241	92421	92421					0.0785460251142922
VFTLVTHPI	9	Unmodified	_VFTLVTHPI_					0	0	0			REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF	REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.2855224609375	2	513.80276	1025.59097	-0.10577	-5.4346E-05	-0.73602	-0.00037817	-0.84179	-0.00043251	513.8020526980073	62.043	0.4296	61.785	61.628	62.058	-0.25725					13	10	2	0	0	0	0.024466	1	6971	6971		25.45	1.2474	1	97734	+		83407	27530	58148	58242	92422	92422					0.0791952134532039
VFTMKWNKHIE	11	Unmodified	_VFTMKWNKHIE_					0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.777587890625	3	478.251707	1431.73329	0.2692	0.00012874	3.4528	0.0016513	3.722	0.0017801	478.2533740509604	27.376	0.25373	27.376	27.144	27.398	0					9	6	2	0	0	0	0.024801	1	1487	1487		23.378	6.2112	1	221230			83408	1532	58149	58243	92423	92423					0.034693660251832625
VFTMPLLSPS	10	Unmodified	_VFTMPLLSPS_					0	0	0		nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;ENSG00000175727|ENST00000319080|MLXIP	nc|ENSG00000175727|Q9HAP2-4|MLXIP	nc|ENSG00000175727|Q9HAP2-4|MLXIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.7687377929688	2	546.293911	1090.57327	-0.80842	-0.00044164	3.4409	0.0018797	2.6325	0.0014381	546.2957104131167	38.842	0.44885	38.619	38.374	38.823	-0.22241					20	11	2	0	0	0	0.03519	1	3203	3203		25.574	6.4705	1	350680			83409	8586	58150	58244	92424	92424					0.03160438028180579
VFTQTRGYV	9	Unmodified	_VFTQTRGYV_					0	0	0		ENST00000493753.1_1_21:42771285-42771387:+|nuORF	ENST00000493753.1_1_21:42771285-42771387:+|nuORF	ENST00000493753.1_1_21:42771285-42771387:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.787109375	2	535.785099	1069.55564	0.018321	9.8159E-06	4.2765	0.0022913	4.2949	0.0023011	535.7871417403009	17.46	0.41826	17.317	17.134	17.552	-0.14278					18	8	3	0	0	0	0.78069	1	161	161		40.573	1.7665	1	82508			83410	15512	58151	58245	92425	92425					0.023648588175319674
VFTRGGCLLA	10	Unmodified	_VFTRGGCLLA_					0	0	0			REV__ENST00000591462.5_1_19:11560227-11561639:+|nuORF	REV__ENST00000591462.5_1_19:11560227-11561639:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7698974609375	2	518.784044	1035.55354	-1.2145	-0.00063009	1.134	0.00058833	-0.080498	-4.1761E-05	518.7845180692824	35.791	0.96021	35.748	35.176	36.136	-0.042458					38	25	2	0	0	0	0.03519	1	2740	2740		27.882	0	1	127590	+		83411	35724	58152	58246	92426	92426					0.03718106808082666
VFTVATSILI	10	Unmodified	_VFTVATSILI_					0	0	0			REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.776611328125	2	532.323525	1062.6325	0.91754	0.00048843	-0.3994	-0.00021261	0.51815	0.00027582	532.322933664322	82.394	1.1514	82.284	82.043	83.195	-0.11006					33	26	2	0	0	0	0.03519	1	10347	10347		49.442	12.282	1	133270	+		83412	28640	58153	58247	92427	92427					0.10368657314006668
VFTYGHLKV	9	Unmodified	_VFTYGHLKV_					0	0	0		nc|ENSG00000141485|Q86YT5-4|SLC13A5;nc|ENSG00000141485|Q86YT5-3|SLC13A5;ENSG00000141485|ENST00000433363|SLC13A5	nc|ENSG00000141485|Q86YT5-4|SLC13A5	nc|ENSG00000141485|Q86YT5-4|SLC13A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.8140258789062	2	532.300384	1062.58622	-0.19373	-0.00010312	1.8847	0.0010032	1.6909	0.00090008	532.803180658726	87.527	0.29723	87.39	87.248	87.545	-0.13734					9	6	2	0	0	0	0.024506	1	10626	10626		23.042	0	1	94506			83413	5496	58154	58248	92428	92428					0.05742637202570222
VFVAQPLAEY	10	Unmodified	_VFVAQPLAEY_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.8009643554688	2	568.802957	1135.59136	-1.2627	-0.00071821	-2.7241	-0.0015495	-3.9867	-0.0022677	568.8013133151399	33.815	0.54237	33.639	33.43	33.972	-0.17557					33	13	3	0	0	0	0.79525	1	2437	2437		60.972	4.5381	1	939360	+		83414	28212	58155	58249	92429	92429					0.028988962745188473
VFVASPHKT	9	Unmodified	_VFVASPHKT_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.27838134765625	2	493.276909	984.539266	1.1061	0.0005456	2.4011	0.0011844	3.5071	0.00173	493.27787412812	20.173	1.7642	19.977	19.26	21.024	-0.19577					59	35	4	0	0	0	0.77768	1	514	514		40.778	1.5253	1	719150			83415	2414	58156	58250	92430	92430					0.04637777651419128
VFVICFLPSV	10	Unmodified	_VFVICFLPSV_					0	0	0		ENSG00000182782|ENST00000328880|HCAR2;ENSG00000255398|ENST00000528880|HCAR3	ENSG00000182782|ENST00000328880|HCAR2	ENSG00000182782|ENST00000328880|HCAR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.7841186523438	2	562.314646	1122.61474	-0.89994	-0.00050605	3.0711	0.0017269	2.1711	0.0012208	562.3160359214232	46.202	0.48546	45.999	45.744	46.23	-0.20226					20	12	2	0	0	0	0.03519	1	4459	4459		27.882	0	1	355820			83416	9164	58157	58251	92431	92431					0.05833618787505657
VFVIKNTLN	9	Unmodified	_VFVIKNTLN_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.7793579101562	2	524.313492	1046.61243	-0.057874	-3.0344E-05	0.3279	0.00017192	0.27002	0.00014158	524.3135709452822	78.906	0.91364	78.925	78.4	79.314	0.018677					32	21	2	0	0	0	0.024261	1	9636	9636		54.776	8.8041	1	138480	+		83417	20986	58158	58252	92432	92432					0.09098906374060789
VFVIVWGW	8	Unmodified	_VFVIVWGW_					0	0	0			REV__ENSG00000165449|ENST00000395348|SLC16A9	REV__ENSG00000165449|ENST00000395348|SLC16A9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.28619384765625	2	503.281463	1004.54837	0.068971	3.4712E-05	0.4573	0.00023015	0.52627	0.00026486	503.2820003470484	63.194	0.41357	62.973	62.648	63.062	-0.22097					17	9	2	0	0	0	0.027866	1	7126	7126		33.493	0	1	398500	+		83418	25886	58159	58253	92433	92433					0.046281710077551
VFVKFIVPK	9	Unmodified	_VFVKFIVPK_					0	0	0			REV__nc|ENSG00000196208|Q4ZG55-3|GREB1	REV__nc|ENSG00000196208|Q4ZG55-3|GREB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.86328125	2	538.846971	1075.67939	-1.3603	-0.00073301	1.6515	0.00088988	0.29113	0.00015688	538.8490652151725	80.29	0.29685	80.311	80.189	80.486	0.021439					10	6	2	0	0	0	0.024541	1	9916	9916		31.955	12.595	1	64890	+		83419	37049	58160	58254	92434	92434					0.14457561655808604
VFVKPLVLF	9	Unmodified	_VFVKPLVLF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.3392944335938	2	531.341521	1060.66849	-0.43388	-0.00023054	-3.3019	-0.0017544	-3.7357	-0.001985	531.339615983951	59.068	0.8021	58.88	58.546	59.348	-0.18795					50	19	3	0	0	0	0.33184	2	6513	6513;6523		71.378	18.601	1	3034300			83420	4060	58161	58255	92435;92436	92435					0.1405815928148968
VFVKPLVLF	9	Unmodified	_VFVKPLVLF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	531.341521	1060.66849	-0.17011	-9.0386E-05	-3.6963	-0.001964	-3.8664	-0.0020544	531.3394129590275	58.969	0.76921	58.787	58.466	59.235	-0.18134	-0.065766	4.9541E-05	NaN	71.378	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3050600			83421	4060	58161	58255							0.1405815928148968
VFVLIAPLL	9	Unmodified	_VFVLIAPLL_					0	0	0			REV__SLC4A2|p.I1006V|1|0.38|ENSG00000164889|chr7:151074810-151074810|A/G|missense_variant	REV__SLC4A2|p.I1006V|1|0.38|ENSG00000164889|chr7:151074810-151074810|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.78875732421875	2	492.828246	983.64194	0.081172	4.0004E-05	2.136	0.0010527	2.2171	0.0010927	492.82935776561345	77.972	0.16638	77.972	77.876	78.042	0					5	3	2	0	0	0	0.024289	1	9628	9628		60.404	11.193	1	67282	+		83422	37507	58162	58256	92437	92437					0.1494647039019128
VFVLIAPLL	9	Unmodified	_VFVLIAPLL_					0	0	0			REV__SLC4A2|p.I1006V|1|0.38|ENSG00000164889|chr7:151074810-151074810|A/G|missense_variant	REV__SLC4A2|p.I1006V|1|0.38|ENSG00000164889|chr7:151074810-151074810|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.78240966796875	2	492.828246	983.64194	0.8692	0.00042836	1.5247	0.00075141	2.3939	0.0011798	492.8300100858098	78.146	0.20725	77.954	77.849	78.056	-0.1921					7	4	2	0	0	0	0.024475	1	9627	9627		39.021	19.662	1	34670	+		83423	37507	58162	58256	92438	92438					0.1494647039019128
VFVLNIHY	8	Unmodified	_VFVLNIHY_					0	0	0		nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.784423828125	2	502.781828	1003.5491	0.0028264	1.4211E-06	-1.4986	-0.00075349	-1.4958	-0.00075207	502.7814247779999	72.625	0.42554	72.348	72.028	72.454	-0.2769					13	9	2	0	0	0	0.027866	1	8468	8468		37.028	5.0736	1	61922			83424	5966	58163	58257	92439	92439					0.0474696565679551
VFVLSPLTN	9	Unmodified	_VFVLSPLTN_					0	0	0		ENST00000442760.2_1_13:45914489-45915204:-|nuORF	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2872314453125	2	495.286943	988.559333	0.098235	4.8654E-05	-0.32089	-0.00015894	-0.22266	-0.00011028	495.2867927615451	67.123	2.1847	67.123	66.714	68.898	0					130	55	5	0	0	0	0.42604	1	7982	7982		64.207	0	1	21018000			83425	14386	58164	58258	92440	92440					0.06459528591358321
VFVLVTKAL	9	Unmodified	_VFVLVTKAL_					0	0	0			REV__ENSG00000126010|ENST00000380289|GRPR	REV__ENSG00000126010|ENST00000380289|GRPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.80596923828125	2	495.323328	988.632104	-0.0071412	-3.5372E-06	-0.87599	-0.0004339	-0.88313	-0.00043744	495.3224716958558	81.999	0.77618	81.999	81.63	82.406	0					20	18	2	0	0	0	0.024381	1	10205	10205		21.96	6.3181	1	114210	+		83426	22875	58165	58259	92441	92441					0.13733282384794165
VFVLVTKAL	9	Unmodified	_VFVLVTKAL_					0	0	0			REV__ENSG00000126010|ENST00000380289|GRPR	REV__ENSG00000126010|ENST00000380289|GRPR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.323328	988.632104	0.20251	0.00010031	-3.0682	-0.0015198	-2.8657	-0.0014194	495.3211265150027	81.933	0.63877	81.74	81.419	82.058	-0.19334	-0.181	-0.0020937	NaN	21.96	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53291	+		83427	22875	58165	58259							0.13733282384794165
VFVQILRLI	9	Unmodified	_VFVQILRLI_					0	0	0		ENSG00000138379|ENST00000260950|MSTN	ENSG00000138379|ENST00000260950|MSTN	ENSG00000138379|ENST00000260950|MSTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.8131713867188	2	550.863152	1099.71175	-1.437	-0.0007916	0.88067	0.00048513	-0.55634	-0.00030647	550.8630680400375	38.018	0.2331	37.935	37.883	38.116	-0.082516					9	6	2	0	0	0	0.024541	1	3139	3139		8.2313	0	1	69941			83428	5235	58166	58260	92442	92442					0.16588349058815766
VFVRLRRH	8	Unmodified	_VFVRLRRH_					0	0	0		nc|ENSG00000092929|Q70J99-3|UNC13D;ENSG00000092929|ENST00000207549|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-3|UNC13D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.7927856445312	2	541.838334	1081.66212	-1.3844	-0.00075012	-0.97699	-0.00052937	-2.3614	-0.0012795	541.8377653664045	44.51	0.5815	44.51	44.281	44.862	0					35	16	3	0	0	0	0.027866	1	4247	4247		26.796	4.8362	1	424000			83429	1999	58167	58261	92443	92443					0.124550788933675
VFVSTYYTL	9	Unmodified	_VFVSTYYTL_					0	0	0		ENSG00000250510|ENST00000311268|GPR162;ENST00000535220.1_1_12:6933100-6934099:+|nuORF	ENSG00000250510|ENST00000311268|GPR162	ENSG00000250510|ENST00000311268|GPR162	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.8404541015625	2	546.784233	1091.55391	-0.16593	-9.0727E-05	0.62717	0.00034293	0.46124	0.0002522	546.7838460535793	99.615	0.43594	99.615	99.268	99.704	0					11	9	2	0	0	0	0.024436	1	12706	12706		30.504	1.3541	1	37904			83430	10849	58168	58262	92444	92444					0.011798050089055323
VFVSTYYTL	9	Unmodified	_VFVSTYYTL_					0	0	0		ENSG00000250510|ENST00000311268|GPR162;ENST00000535220.1_1_12:6933100-6934099:+|nuORF	ENSG00000250510|ENST00000311268|GPR162	ENSG00000250510|ENST00000311268|GPR162	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.784233	1091.55391	0.43023	0.00023524	-0.68799	-0.00037618	-0.25776	-0.00014094	546.7830132411532	99.403	0.16042	99.268	99.129	99.29	-0.13526	-0.17345	-0.00071618	NaN	30.504	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19418			83431	10849	58168	58262							0.011798050089055323
VFVTGEIAV	9	Unmodified	_VFVTGEIAV_					0	0	0			REV__OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	REV__OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	467.7663879394531	2	467.765843	933.517133	1.1376	0.00053213	-0.81226	-0.00037995	0.32533	0.00015218	467.76525024702903	87.009	0.96416	87.03	86.677	87.641	0.021263					59	22	4	0	0	0	0.20304	1	10868	10868		88.643	0	1	1301100	+		83432	28947	58169	58263	92445	92445					0.04771553183002197
VFVTGEIAV	9	Unmodified	_VFVTGEIAV_					0	0	0			REV__OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	REV__OR2W3|p.L284Sfs*14|1|0.27|ENSG00000238243|chr1:247896431-247896431|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	467.765843	933.517133	0.42609	0.00019931	0.034999	1.6371E-05	0.46109	0.00021568	467.76561421553316	87.002	0.83951	86.966	86.692	87.532	-0.035362	-0.039426	0.00030852	NaN	88.643	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042500	+		83433	28947	58169	58263							0.04771553183002197
VFVVTVLKN	9	Unmodified	_VFVVTVLKN_					0	0	0		ENST00000409258.2_1_2:86386442-86398424:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.7841796875	2	509.81841	1017.62227	-0.11206	-5.7131E-05	-0.40129	-0.00020458	-0.51335	-0.00026171	509.8179415873776	47.588	0.47993	47.318	47.087	47.567	-0.26939					21	12	2	0	0	0	0.024506	1	4642	4642		23.042	0	1	291390			83434	13768	58170	58264	92446	92446					0.11416094379421793
VFVWGFSFSGA	11	Unmodified	_VFVWGFSFSGA_					0	0	0		nc|ENSG00000274523|Q96I51-2|RCC1L;nc|ENSG00000274523|Q96I51-3|RCC1L;ENSG00000274523|ENST00000610322|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	nc|ENSG00000274523|Q96I51-2|RCC1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	401.865966796875	3	401.865958	1202.57605	0.48425	0.00019461	-0.39431	-0.00015846	0.08994	3.6144E-05	401.86569934878145	43.469	0.80042	43.232	42.8	43.6	-0.23736					79	21	5	0	0	0	1.0281	1	3958	3958		30.569	0.25114	1	5163100			83435	11030	58171	58265	92447	92447					-0.017139705226554725
VFWELLVL	8	Unmodified	_VFWELLVL_					0	0	0		ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15;nc|ENSG00000141497|Q9H091-2|ZMYND15;ENST00000571782.1_1_17:4647099-4647876:+|nuORF	ENSG00000141497|ENST00000433935|ZMYND15	ENSG00000141497|ENST00000433935|ZMYND15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8040771484375	2	509.802229	1017.5899	0.26088	0.000133	2.6261	0.0013388	2.887	0.0014718	509.8034341260335	98.051	1.1848	98.061	97.728	98.913	0.010231					53	27	3	0	0	0	1.0133	1	12463	12463		35.201	3.2459	1	929870			83436	5497	58172	58266	92448	92448					0.08181306976428004
VFWINPKT	8	Unmodified	_VFWINPKT_					0	0	0		ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	ENSG00000128536|ENST00000317716|CDHR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.7845458984375	2	502.781828	1003.5491	-0.76678	-0.00038552	-0.066817	-3.3594E-05	-0.8336	-0.00041912	502.78148810670444	72.405	0.33668	72.207	72.034	72.371	-0.1981					13	7	2	0	0	0	0.027866	1	8466	8466		31.955	0	1	125600			83437	4293	58173	58267	92449	92449					0.04746965656784141
VFWLDTLS	8	Unmodified	_VFWLDTLS_					0	0	0			REV__ENST00000334534.9_1_20:10579325-10582447:+|nuORF	REV__ENST00000334534.9_1_20:10579325-10582447:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.7613525390625	2	490.758018	979.501483	-0.32836	-0.00016114	3.5296	0.0017322	3.2012	0.001571	490.759672680245	86.564	1.3982	86.587	86.245	87.644	0.023666					50	32	2	0	0	0	0.027866	1	10826	10826		42.474	0	1	353200	+		83438	30521	58174	58268	92450	92450					0.010912666659464776
VFWLIALL	8	Unmodified	_VFWLIALL_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.29052734375	2	487.807314	973.600075	0.45278	0.00022087	2.3768	0.0011594	2.8296	0.0013803	487.8083742242203	102.19	0.34485	102.02	101.82	102.17	-0.17178					14	8	2	0	0	0	0.027866	1	12663	12663		10.185	0	1	95564			83439	3997	58175	58269	92451	92451					0.11221914701650348
VFWLIALL	8	Unmodified	_VFWLIALL_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.807314	973.600075	-0.31121	-0.00015181	3.5533	0.0017333	3.2421	0.0015815	487.80905330013167	102.02	0.52851	102.02	101.77	102.3	0	0.021663	0.00042041	NaN	10.185	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273590			83440	3997	58175	58269							0.11221914701650348
VFWLIALL	8	Unmodified	_VFWLIALL_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.807314	973.600075	-0.14926	-7.2809E-05	3.4176	0.0016672	3.2684	0.0015943	487.80887869357326	102.04	0.43951	102.04	101.84	102.28	-0.0054474	0.045873	0.0002881	NaN	10.185	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222070			83441	3997	58175	58269							0.11221914701650348
VFWLIALL	8	Unmodified	_VFWLIALL_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.807314	973.600075	0.21775	0.00010622	2.7408	0.001337	2.9585	0.0014432	487.808565484241	102.08	0.39034	101.95	101.76	102.15	-0.12931	-0.044775	-0.00037227	NaN	10.185	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110860			83442	3997	58175	58269							0.11221914701650348
VFWLIALL	8	Unmodified	_VFWLIALL_					0	0	0		ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	ENSG00000123700|ENST00000243457|KCNJ2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.807314	973.600075	0.20528	0.00010014	2.5094	0.0012241	2.7147	0.0013242	487.808428526615	102.08	0.38819	101.95	101.76	102.15	-0.12666	-0.044293	-0.000598	NaN	10.185	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93527			83443	3997	58175	58269							0.11221914701650348
VFWLPLLE	8	Unmodified	_VFWLPLLE_					0	0	0		nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;ENSG00000142330|ENST00000391984|CAPN10;nc|ENSG00000142330|Q9HC96-6|CAPN10	nc|ENSG00000142330|Q9HC96-5|CAPN10	nc|ENSG00000142330|Q9HC96-5|CAPN10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.794189453125	2	508.794404	1015.57425	-0.69878	-0.00035553	1.0787	0.00054882	0.37989	0.00019329	508.79480674111306	104.53	0.69931	104.4	104.16	104.86	-0.12927					39	19	3	0	0	0	0.82104	1	13018	13018		57.453	8.2419	1	238860			83444	5554	58176	58270	92452	92452					0.06709020459379644
VFWNLPTN	8	Unmodified	_VFWNLPTN_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.26025390625	2	495.75581	989.497067	-0.55419	-0.00027474	2.1478	0.0010648	1.5936	0.00079003	495.75758519960266	29.402	0.5452	29.405	29.166	29.712	0.0031376					24	13	3	0	0	0	0.027866	1	1811	1811		17.365	0	1	90028			83445	3417	58177	58271	92453	92453					0.0018980224303959403
VFWNLPTN	8	Unmodified	_VFWNLPTN_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.75581	989.497067	-0.77717	-0.00038528	1.2548	0.00062207	0.47762	0.00023678	495.75704832965346	29.627	0.31513	29.706	29.527	29.842	0.078344	0.15044	-0.00042197	NaN	11.511	8	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45000			83446	3417	58177	58271							0.0018980224303959403
VFWRKRWAQMQ	11	Unmodified	_VFWRKRWAQMQ_					0	0	0			REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF	REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2689208984375	3	512.606595	1534.79796	0.14573	7.47E-05	-3.9376	-0.0020184	-3.7918	-0.0019437	512.604634090669	79.424	0.37578	79.205	79.076	79.452	-0.21923					13	8	2	0	0	0	0.024873	1	9532	9532		14.086	11.06	1	49052	+		83447	33826	58178	58272	92454	92454					0.05194985621869819
VFWSSVPEI	9	Unmodified	_VFWSSVPEI_					0	0	0			REV__ENST00000438427.1_1_7:39609015-39609585:-|nuORF	REV__ENST00000438427.1_1_7:39609015-39609585:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7974853515625	2	532.276575	1062.5386	0.059283	3.1555E-05	-1.9262	-0.0010252	-1.8669	-0.00099369	532.7776036580028	91.266	0.20465	91.277	91.114	91.319	0.011276					6	4	2	0	0	0	0.024412	1	11456	11456		40.573	10.255	1	56241	+		83448	32492	58179	58273	92455	92455					0.009829382117231944
VFYEQLPS	8	Unmodified	_VFYEQLPS_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;nc|ENSG00000154262|Q8N139-2|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.79266357421875	2	491.74765	981.480748	0.018649	9.1704E-06	-3.7569	-0.0018475	-3.7383	-0.0018383	491.7457331715122	61.041	0.60637	61.041	60.768	61.374	0					33	15	3	0	0	0	0.027866	1	7031	7031		40.573	16.37	1	710700			83449	6395	58180	58274	92456	92456					-0.010733237137174001
VFYKTPDP	8	Unmodified	_VFYKTPDP_					0	0	0			REV__nc|ENSG00000165097|Q8NB78-4|KDM1B	REV__nc|ENSG00000165097|Q8NB78-4|KDM1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7483825683594	2	483.750193	965.485833	-0.06475	-3.1323E-05	-3.6414	-0.0017615	-3.7061	-0.0017928	483.7484727760296	68.574	0.93627	68.593	68.276	69.212	0.018913					71	24	5	0	0	0	0.845	1	8160	8160		55.504	2.1528	1	4063700	+		83450	25837	58181	58275	92457	92457					0.0017098014890279956
VFYKVKQLA	9	Unmodified	_VFYKVKQLA_					0	0	0			REV__nc|ENSG00000214193|A4FU49|SH3D21	REV__nc|ENSG00000214193|A4FU49|SH3D21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.7670288085938	2	548.331685	1094.64882	0.21427	0.00011749	-4.1048	-0.0022508	-3.8905	-0.0021333	548.3292219497457	32.137	0.68573	31.945	31.771	32.457	-0.19261					25	15	2	0	0	0	0.024541	1	2169	2169		11.511	0	1	60959	+		83451	28774	58182	58276	92458	92458					0.10527783270754298
VFYLNPLN	8	Unmodified	_VFYLNPLN_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7735290527344	2	490.26601	978.517468	-0.24163	-0.00011846	0.9313	0.00045658	0.68967	0.00033812	490.26547834839175	65.625	0.2899	65.374	65.189	65.479	-0.25112					10	6	2	0	0	0	0.027866	1	7500	7500		28.254	0	1	106040			83452	1408	58183	58277	92459	92459					0.027349729028514957
VFYPVWKAL	9	Unmodified	_VFYPVWKAL_					0	0	0			REV__ENST00000551872.1_1_12:57927977-57928175:-|nuORF	REV__ENST00000551872.1_1_12:57927977-57928175:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	562.2930908203125	2	561.820953	1121.62735	-0.95699	-0.00053765	3.0902	0.0017361	2.1332	0.0011985	561.8214173231374	82.139	0.77553	81.999	81.659	82.434	-0.14014					53	17	4	0	0	0	0.024466	1	9931	9931		25.45	0	1	200200	+		83453	34942	58184	58278	92460	92460					0.07140398242017909
VFYQPMLN	8	Unmodified	_VFYQPMLN_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.76513671875	2	506.252046	1010.48954	-0.56867	-0.00028789	-2.9087	-0.0014725	-3.4773	-0.0017604	506.751003509693	80.126	0.33701	80.148	80.021	80.358	0.021439					9	7	2	0	0	0	0.027866	1	9880	9880		35.201	0	1	55968	+		83454	21003	58185	58279	92461	92461					-0.015286733488892423
VFYRSSDT	8	Unmodified	_VFYRSSDT_					0	0	0			REV__nc|ENSG00000089818|Q8NC96-2|NECAP1	REV__nc|ENSG00000089818|Q8NC96-2|NECAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2864990234375	2	487.732532	973.45051	0.030654	1.4951E-05	0.2766	0.0001349	0.30725	0.00014986	487.7325211015692	49.647	0.89099	49.647	49.287	50.178	0					58	24	3	0	0	0	0.027866	1	5099	5099		35.201	3.2459	1	609180	+		83455	20861	58186	58280	92462	92462					-0.03727682378894315
VFYVRSSQ	8	Unmodified	_VFYVRSSQ_					0	0	0			REV__ENSG00000005206|ENST00000613503|SPPL2B	REV__ENSG00000005206|ENST00000613503|SPPL2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2784423828125	2	493.258717	984.50288	-0.35366	-0.00017444	-4.4417	-0.0021909	-4.7953	-0.0023653	493.25625620677863	19.992	0.23708	19.824	19.718	19.955	-0.16774					6	4	2	0	0	0	0.027866	1	506	506		34.173	9.6685	1	11332	+		83456	19799	58187	58281	92463	92463					0.010009007547182591
VGAAAGQLGLV	11	Unmodified	_VGAAAGQLGLV_					0	0	0			REV__ENST00000480549.5_1_1:36787373-36789572:+|nuORF	REV__ENST00000480549.5_1_1:36787373-36789572:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3002014160156	2	478.282192	954.549831	0.13217	6.3214E-05	-0.022962	-1.0982E-05	0.10921	5.2232E-05	478.2820792567584	73.436	0.6563	73.164	72.842	73.499	-0.27126					40	16	3	0	0	0	0.024802	1	8888	8888		58.782	0	1	716650	+		83457	33426	58188	58282	92464	92464					0.0707376030584328
VGAAVDLTL	9	Unmodified	_VGAAVDLTL_					0	0	0		ENSG00000066056|ENST00000372476|TIE1;nc|ENSG00000066056|P35590-3|TIE1;nc|ENSG00000066056|P35590-2|TIE1	ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.2275695800781	2	429.750193	857.485833	-0.38305	-0.00016462	-2.539	-0.0010911	-2.9221	-0.0012558	429.74901815879423	27.544	0.36837	27.531	27.314	27.683	-0.012983					16	9	2	0	0	0	0.024386	1	1475	1475		18.324	0	1	93626			83458	1330	58189	58283	92465	92465					0.05138980148910832
VGAEKHRA	8	Unmodified	_VGAEKHRA_					0	0	0		DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.7767333984375	2	434.243401	866.472249	-0.5554	-0.00024118	1.2966	0.00056303	0.74119	0.00032186	434.2438719427016	29.641	0.67229	29.468	29.199	29.872	-0.17258					21	15	2	0	0	0	0.027866	1	1804	1804		68.787	7.8149	1	134720			83459	663	58190	58284	92466	92466					0.03367167160331519
VGAENVARIR	10	Unmodified	_VGAENVARIR_					0	0	0			REV__ENSG00000179057|ENST00000513874|IGSF22	REV__ENSG00000179057|ENST00000513874|IGSF22	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.8143310546875	2	542.814722	1083.61489	-1.7798	-0.00096609	1.4315	0.00077702	-0.34831	-0.00018907	542.8154250042096	30.038	0.73472	30.038	29.732	30.467	0					48	17	4	0	0	0	0.6365	1	1903	1903		72.879	10.772	1	1570400	+		83460	27232	58191	58285	92467	92467					0.07642754831681486
VGAFKKSI	8	Unmodified	_VGAFKKSI_					0	0	0		nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	424.86212158203125	2	425.263271	848.511988	-0.58655	-0.00024944	0.90199	0.00038358	0.31544	0.00013415	425.26352559415994	29.936	0.46933	29.764	29.533	30.002	-0.17258					22	10	3	0	0	0	0.027866	1	1866	1866		27.882	0	1	143250			83461	6841	58192	58286	92468	92468					0.08167294111046886
VGAFMLESVL	10	Unmodified	_VGAFMLESVL_					0	0	0		ENST00000466561.1_1_1:17312718-17313137:-|nuORF;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2	ENST00000466561.1_1_1:17312718-17313137:-|nuORF	ENST00000466561.1_1_1:17312718-17313137:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.82080078125	2	533.286085	1064.55762	-0.65755	-0.00035066	-1.2125	-0.0006466	-1.87	-0.00099726	533.7878179920417	69.15	1.7177	69.165	68.076	69.794	0.015129					74	44	3	0	0	0	0.03519	1	8316	8316		30.504	12.179	1	149710			83462	6742	58193	58287	92469	92469					0.02792151511107477
VGAFRAPI	8	Unmodified	_VGAFRAPI_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.72198486328125	2	415.747788	829.481023	0.94241	0.0003918	3.2503	0.0013513	4.1927	0.0017431	415.7495671134746	42.373	0.34053	42.373	42.12	42.461	0					14	9	2	0	0	0	0.027866	1	3908	3908		9.4706	0.64823	1	179580	+		83463	21876	58194	58288	92470	92470					0.05946140796800137
VGAFRAPI	8	Unmodified	_VGAFRAPI_					0	0	0			REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	REV__VWF|p.S2741Vfs*2|1|0.29|ENSG00000110799|chr12:5949819-5949820|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.7220153808594	2	415.747788	829.481023	0.24358	0.00010127	0.41146	0.00017106	0.65504	0.00027233	415.74806397542875	42.5	0.34528	42.368	42.183	42.528	-0.13219					15	9	2	0	0	0	0.027866	1	3889	3889		49.211	33.575	1	262850	+		83464	21876	58194	58288	92471	92471					0.05946140796800137
VGAHLQLI	8	Unmodified	_VGAHLQLI_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	REV__nc|ENSG00000139990|Q96JK2-2|DCAF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.5677185058594	2	425.760895	849.507237	0.83519	0.00035559	-0.75587	-0.00032182	0.079315	3.3769E-05	425.76048472309685	59.278	0.686	59.037	58.738	59.424	-0.24165					25	16	2	0	0	0	0.027866	1	6560	6560		21.702	0	1	504840	+		83465	23981	58195	58289	92472	92472					0.07646409968276657
VGAKNATLS	9	Unmodified	_VGAKNATLS_					0	0	0		nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	nc|ENSG00000063244|P26368-2|U2AF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.2259826660156	2	430.745442	859.476331	-0.36919	-0.00015902	-0.24547	-0.00010573	-0.61465	-0.00026476	430.7452649161422	45.083	0.461	44.984	44.828	45.289	-0.099449					22	12	3	0	0	0	0.024412	1	4266	4266		24.203	1.1603	1	206340			83466	18059	58197	58290	92473	92473					0.04097211863393113
VGALGNLTL	9	Unmodified	_VGALGNLTL_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000183873|Q14524-5|SCN5A;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.7361145019531	2	429.258185	856.501818	0.051014	2.1898E-05	0.72274	0.00031024	0.77375	0.00033214	429.2583524658455	40.55	0.81063	40.55	40.024	40.835	0					52	22	3	0	0	0	0.024381	1	3489	3489		29.15	0	1	483010			83467	7940;6337;18631;5026;9288;37863;816	58198	58291	92474	92474					0.06782686385793113
VGALGNLTL	9	Unmodified	_VGALGNLTL_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000007314|ENST00000435607|SCN4A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000183873|Q14524-5|SCN5A;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	429.258185	856.501818	0.042332	1.8171E-05	0.17763	7.625E-05	0.21997	9.4422E-05	429.25790739170344	41.065	0.19572	40.929	40.752	40.947	-0.13553	0.22843	-0.00028141	NaN	55.504	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48793			83468	7940;6337;18631;5026;9288;37863;816	58198	58291							0.06782686385793113
VGALHLIQ	8	Unmodified	_VGALHLIQ_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-4|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.2633056640625	2	425.760895	849.507237	0.059442	2.5308E-05	-2.5298	-0.0010771	-2.4703	-0.0010518	425.7595340175068	47.096	0.92008	46.943	46.276	47.196	-0.15301					37	24	2	0	0	0	0.027866	1	4575	4575		39.021	0	1	235160			83469	6775	58199	58292	92475	92475					0.07646409968276657
VGALHLIQ	8	Unmodified	_VGALHLIQ_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-4|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.760895	849.507237	-0.3042	-0.00012952	-1.699	-0.00072337	-2.0032	-0.00085289	425.7596361893337	46.937	0.73672	46.937	46.515	47.252	0	-0.014656	-0.00031431	NaN	21.702	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173760			83470	6775	58199	58292							0.07646409968276657
VGALHLIQ	8	Unmodified	_VGALHLIQ_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-4|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	425.760895	849.507237	-0.13474	-5.7366E-05	-0.75413	-0.00032108	-0.88887	-0.00037845	425.76043659876626	46.916	0.55618	46.975	46.623	47.179	0.059097	0.023721	0.00049027	NaN	21.702	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193440			83471	6775	58199	58292							0.07646409968276657
VGALLPYL	8	Unmodified	_VGALLPYL_					0	0	0		ENST00000475300.1_1_10:45935943-45936950:+|nuORF	ENST00000475300.1_1_10:45935943-45936950:+|nuORF	ENST00000475300.1_1_10:45935943-45936950:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5181884765625	2	423.260197	844.50584	-0.12949	-5.481E-05	-4.4046	-0.0018643	-4.5341	-0.0019191	423.25824915129573	31.305	0.73505	31.064	30.711	31.446	-0.24109					22	18	2	0	0	0	0.027866	1	2023	2023		24.504	0	1	82177			83472	15057	58200	58293	92476	92476					0.07736775879493507
VGALLVYD	8	Unmodified	_VGALLVYD_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.23858642578125	2	425.239461	848.46437	0.18391	7.8206E-05	-3.2747	-0.0013925	-3.0908	-0.0013143	425.237952861479	29.64	1.0108	29.49	29.129	30.14	-0.14952					46	23	3	0	0	0	1.0572	1	1812	1812		28.254	0	1	1459300			83473	2528	58201	58294	92477	92477					0.034075951201771204
VGALRETV	8	Unmodified	_VGALRETV_					0	0	0		ENSG00000204396|ENST00000375688|VWA7;nc|ENSG00000204396|Q9Y334-2|VWA7;VWA7|p.Y468Ifs*107|1|0.19|ENSG00000204396|chr6:31769119-31769120|-/T|frameshift_variant	ENSG00000204396|ENST00000375688|VWA7	ENSG00000204396|ENST00000375688|VWA7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2221984863281	2	422.747985	843.481417	-0.27296	-0.00011539	-0.99657	-0.0004213	-1.2695	-0.00053669	422.7480478484442	29.275	0.36238	29.354	29.165	29.527	0.078344					17	8	3	0	0	0	0.027866	1	1735	1735		8.8223	5.138	1	76748			83474	10342	58202	58295	92478	92478					0.05341515726001944
VGALTRRLE	9	Unmodified	_VGALTRRLE_					0	0	0		ENST00000375050.5_1_6:32154027-32154156:-|nuORF	ENST00000375050.5_1_6:32154027-32154156:-|nuORF	ENST00000375050.5_1_6:32154027-32154156:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.806396484375	2	507.806365	1013.59818	-0.62227	-0.000316	0.59839	0.00030387	-0.023881	-1.2127E-05	507.8064844652341	20.733	0.69473	20.51	20.167	20.861	-0.22344					37	13	4	0	0	0	0.77768	1	562	562		40.778	1.972	1	325060			83475	13145	58203	58296	92479	92479					0.09192253945741413
VGAPARAET	9	Unmodified	_VGAPARAET_					0	0	0		nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	nc|ENSG829|Q9HDB9|ERVK-5_gag	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.743408203125	2	436.235242	870.45593	-0.51813	-0.00022603	-0.21858	-9.5354E-05	-0.73672	-0.00032138	436.2350101314816	33.041	0.4054	33.048	32.85	33.255	0.0066261					22	10	3	0	0	0	0.024436	1	2356	2356		38.806	15.764	1	274710			83476	18851	58204	58297	92480	92480					0.01552041203558474
VGAPGARAAA	10	Unmodified	_VGAPGARAAA_					0	0	0			REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7381896972656	2	420.737951	839.46135	-0.347	-0.000146	0.98873	0.00041599	0.64172	0.00027	420.73828310758734	23.34	1.1792	23.34	22.987	24.166	0					65	27	4	0	0	0	0.9856	1	906	906		47.916	5.5195	1	3391000	+		83477	31707	58205	58298	92481	92481					0.03519764786040014
VGAPGARAAA	10	Unmodified	_VGAPGARAAA_					0	0	0			REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	REV__ENST00000395595.7_1_22:51221660-51222060:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.7381896972656	2	420.737951	839.46135	-0.48906	-0.00020577	1.2308	0.00051783	0.7417	0.00031206	420.7383850676549	23.32	1.3138	23.259	22.981	24.295	-0.060862					62	30	4	0	0	0	0.75995	1	896	896		63.306	2.3343	1	3425100	+		83478	31707	58205	58298	92482	92482					0.03519764786040014
VGAPGVRVL	9	Unmodified	_VGAPGVRVL_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2516784667969	2	434.27417	866.533787	-0.2096	-9.1024E-05	-3.99	-0.0017328	-4.1996	-0.0018238	434.27302479089593	80.351	1.4181	80.372	79.235	80.654	0.021439					40	33	2	0	0	0	0.024262	1	9745	9745		47.916	5.5195	1	180960	+		83479	33266	58206	58299	92483	92483					0.09518098859598467
VGAPGVRVL	9	Unmodified	_VGAPGVRVL_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.27417	866.533787	-0.18538	-8.0506E-05	-11.049	-0.0047984	-11.235	-0.0048789	434.2694789888904	80.369	0.42272	80.369	80.163	80.585	0	-0.0014901	-0.0010025	NaN	47.916	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146430	+		83480	33266	58206	58299							0.09518098859598467
VGAPRPPAS	9	Unmodified	_VGAPRPPAS_					0	0	0		nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.7198486328125	2	426.240327	850.466101	0.65477	0.00027909	2.7766	0.0011835	3.4314	0.0014626	426.24030024836634	22.256	0.89367	22.067	21.434	22.327	-0.18894					35	18	3	0	0	0	0.024541	1	702	702		7.6903	0	1	244800			83481	18460	58207	58300	92484	92484					0.0348864892880556
VGARARLGI	9	Unmodified	_VGARARLGI_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.25830078125	2	456.790518	911.566484	-0.21052	-9.6165E-05	0.63127	0.00028836	0.42074	0.00019219	456.7909155913889	31.958	0.39975	31.97	31.663	32.063	0.011797					14	9	2	0	0	0	0.024293	1	2169	2169		25.45	0	1	122680			83482	14217	58208	58301	92485	92485					0.10716305982452923
VGARATVVRA	10	Unmodified	_VGARATVVRA_					0	0	0			REV__ENST00000498008.5_1_1:46809037-46809295:+|nuORF	REV__ENST00000498008.5_1_1:46809037-46809295:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7795104980469	2	500.306532	998.598512	-0.72523	-0.00036284	-0.12813	-6.4102E-05	-0.85335	-0.00042694	500.3064276370605	32.939	0.83373	32.946	32.738	33.572	0.0066261					42	22	3	0	0	0	0.03519	1	2291	2291		51.193	0	1	3294800	+		83483	33866	58209	58302	92486	92486					0.09915673665602753
VGAREKKP	8	Unmodified	_VGAREKKP_					0	0	0			REV__ENSG00000160818|ENST00000368232|GPATCH4	REV__ENSG00000160818|ENST00000368232|GPATCH4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.74005126953125	2	442.769252	883.52395	0.36004	0.00015942	0.49169	0.0002177	0.85173	0.00037712	442.7691689855977	25.234	0.40624	25.314	25.093	25.499	0.08009					14	9	2	0	0	0	0.027866	1	1147	1147		17.365	0	1	73477	+		83484	25350	58210	58303	92487	92487					0.07752910854230777
VGARFIGI	8	Unmodified	_VGARFIGI_					0	0	0			REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.89141845703125	2	416.755613	831.496673	-0.30922	-0.00012887	0.67556	0.00028155	0.36634	0.00015267	416.7559141720842	33.35	0.60394	33.119	32.835	33.439	-0.23107					24	14	2	0	0	0	0.027866	1	2411	2411		9.4706	0.64823	1	153400	+		83485	34125	58211	58304	92488	92488					0.07418427313837128
VGARFIGI	8	Unmodified	_VGARFIGI_					0	0	0			REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8916931152344	2	416.755613	831.496673	-0.5662	-0.00023597	1.2003	0.00050023	0.63411	0.00026427	416.75599707330514	33.229	0.60106	33.063	32.839	33.44	-0.16565					31	14	3	0	0	0	0.027866	1	2373	2373		29.842	0	1	315770	+		83486	34125	58211	58304	92489	92489					0.07418427313837128
VGARFIGI	8	Unmodified	_VGARFIGI_					0	0	0			REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	416.755613	831.496673	-0.25151	-0.00010482	0.96294	0.00040131	0.71143	0.00029649	416.75589949914706	33.276	0.46899	33.076	32.896	33.365	-0.20019	-0.010172	-1.2097E-05	NaN	9.4706	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255120	+		83487	34125	58211	58304							0.07418427313837128
VGARGVRARA	10	Unmodified	_VGARGVRARA_					0	0	0		ENST00000533032.1_1_11:65374739-65375163:-|nuORF	ENST00000533032.1_1_11:65374739-65375163:-|nuORF	ENST00000533032.1_1_11:65374739-65375163:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2929382324219	2	506.809774	1011.60499	3.2469	0.0016456	-0.93593	-0.00047434	2.311	0.0011712	506.8092007911716	17.721	0.6879	17.721	17.399	18.087	0					23	13	2	0	0	0	0.03519	1	218	218		14.865	0	1	352440			83488	16306	58212	58305	92490	92490					0.09965611616974002
VGARREAR	8	Unmodified	_VGARREAR_					0	0	0		ENST00000225972.7_1_17:48474746-48474890:-|nuORF	ENST00000225972.7_1_17:48474746-48474890:-|nuORF	ENST00000225972.7_1_17:48474746-48474890:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7682800292969	2	457.767575	913.520596	0.0029712	1.3601E-06	3.2121	0.0014704	3.215	0.0014717	457.7689124090992	36.716	0.83609	36.653	36.362	37.198	-0.063385					46	21	3	0	0	0	0.44658	1	2939	2939		90.777	0.40684	1	2101400			83489	11210	58213	58306	92491	92491					0.06037660800222966
VGAVAKLRL	9	Unmodified	_VGAVAKLRL_					0	0	0			REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.2765197753906	2	463.810919	925.607286	-1.4919	-0.00069195	0.60233	0.00027937	-0.88955	-0.00041258	463.8110467323925	37.863	0.4048	37.863	37.632	38.037	0					19	11	2	0	0	0	0.024325	1	3105	3105		31.955	5.1588	1	308700	+		83490	33980	58214	58307	92492	92492					0.1415064730207405
VGAVAKLRL	9	Unmodified	_VGAVAKLRL_					0	0	0			REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	463.810919	925.607286	-0.17132	-7.9462E-05	-0.23433	-0.00010869	-0.40566	-0.00018815	463.81061045387844	37.855	0.29253	37.676	37.483	37.775	-0.17929	-0.079238	-0.0005667	NaN	24.203	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162700	+		83491	33980	58214	58307							0.1415064730207405
VGAVAKLRL	9	Unmodified	_VGAVAKLRL_					0	0	0			REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.810919	925.607286	-0.9068	-0.00042058	1.274	0.00059088	0.36717	0.0001703	463.8112377639653	37.877	0.33086	37.656	37.466	37.797	-0.22149	-0.099716	0.00083242	NaN	24.203	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177660	+		83492	33980	58214	58307							0.1415064730207405
VGAVAKLRL	9	Unmodified	_VGAVAKLRL_					0	0	0			REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	REV__ENST00000504300.1_1_5:79781370-79783658:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	463.810919	925.607286	-1.0314	-0.00047837	0.42002	0.00019481	-0.61137	-0.00028356	463.8111684624879	37.862	0.3614	37.644	37.5	37.861	-0.21848	-0.11163	4.0285E-05	NaN	24.203	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134810	+		83493	33980	58214	58307							0.1415064730207405
VGAVCIFF	8	Unmodified	_VGAVCIFF_					0	0	0			REV__nc|ENSG00000124786|Q9H1N7-2|SLC35B3	REV__nc|ENSG00000124786|Q9H1N7-2|SLC35B3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2253112792969	2	428.2253	854.436046	-0.64819	-0.00027757	0.62501	0.00026765	-0.023175	-9.9241E-06	428.2255376804418	25.744	1.2906	25.71	25.392	26.682	-0.034395					60	30	4	0	0	0	1.0241	1	1229	1229		33.493	2.9893	1	1508300	+		83494	22789	58215	58308	92493	92493					0.003005739392506257
VGAVPPPSASA	11	Unmodified	_VGAVPPPSASA_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7579650878906	2	476.758549	951.502546	0.42943	0.00020474	-1.5491	-0.00073853	-1.1196	-0.00053379	476.75768410619594	103.06	1.8983	103.06	102.3	104.2	0					121	45	4	0	0	0	1.0119	1	13226	13226		34.173	1.3601	1	5421500	+		83495	24236	58216	58309	92494	92494					0.024854810348415413
VGAVVAVVTL	10	Unmodified	_VGAVVAVVTL_					0	0	0			REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2970275878906	2	464.29731	926.580068	0.51598	0.00023957	-0.32995	-0.0001532	0.18603	8.6372E-05	464.29701225148847	84.894	0.78568	84.894	84.587	85.372	0					48	18	3	0	0	0	0.87795	1	10650	10650		55.504	6.0627	1	2026400	+		83496	21507	58217	58310	92495	92495					0.1138411897103424
VGAVVAVVTL	10	Unmodified	_VGAVVAVVTL_					0	0	0			REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	REV__SLC1A5|p.P278Lfs*64|1|0.37|ENSG00000105281|chr19:46778900-46778900|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2970886230469	2	464.29731	926.580068	0.2301	0.00010684	-0.12361	-5.7392E-05	0.10649	4.9443E-05	464.297125666511	84.822	0.78975	84.847	84.537	85.327	0.025528					46	18	3	0	0	0	1.0271	2	10560	10550;10560		42.396	6.7778	1	2095600	+		83497	21507	58217	58310	92496;92497	92497					0.1138411897103424
VGCSPLPR	8	Unmodified	_VGCSPLPR_					0	0	0			REV__ENST00000224950.7_1_10:105677279-105677345:-|nuORF	REV__ENST00000224950.7_1_10:105677279-105677345:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.8985595703125	2	414.723455	827.432358	0.018406	7.6335E-06	-2.7519	-0.0011413	-2.7335	-0.0011336	414.7221512527984	25.339	0.99218	25.339	25.009	26.001	0					48	23	3	0	0	0	0.027866	1	1164	1164		35.201	0	1	979490	+		83498	29369	58218	58311	92498	92498					0.011739041653868298
VGCSPLPR	8	Unmodified	_VGCSPLPR_					0	0	0			REV__ENST00000224950.7_1_10:105677279-105677345:-|nuORF	REV__ENST00000224950.7_1_10:105677279-105677345:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	414.723455	827.432358	-0.69311	-0.00028745	-2.8965	-0.0012012	-3.5896	-0.0014887	414.72206174480186	25.733	0.70432	25.506	25.148	25.852	-0.22683	0.17597	-6.1017E-05	NaN	35.201	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375170	+		83499	29369	58218	58311							0.011739041653868298
VGCSPLPR	8	Unmodified	_VGCSPLPR_					0	0	0			REV__ENST00000224950.7_1_10:105677279-105677345:-|nuORF	REV__ENST00000224950.7_1_10:105677279-105677345:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	414.723455	827.432358	0.36823	0.00015271	-2.9407	-0.0012196	-2.5725	-0.0010669	414.7225905106951	25.41	0.41489	25.238	25.034	25.449	-0.17151	-0.091689	-9.7718E-05	NaN	35.201	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43597	+		83500	29369	58218	58311							0.011739041653868298
VGDGERFIF	9	Unmodified	_VGDGERFIF_					0	0	0			REV__nc|ENSG00000006712|Q8N7H5-3|PAF1	REV__nc|ENSG00000006712|Q8N7H5-3|PAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.264404296875	2	520.263999	1038.51345	-0.9474	-0.0004929	0.34348	0.0001787	-0.60392	-0.0003142	520.2642539538033	56.007	1.8706	56.105	55.561	57.432	0.097897					153	51	6	0	0	0	0.4752	1	6121	6121		60.972	0.67798	1	22881000	+		83501	19841	58219	58312	92499	92499					-0.0042711659086762666
VGDKAGVFPSN	11	Unmodified	_VGDKAGVFPSN_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;ENST00000504159.1_1_5:10665035-10665137:-|nuORF;ENST00000487427.5_1_21:35190579-35201291:+|nuORF	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.318115234375	2	545.780013	1089.54547	-1.0059	-0.00054901	1.7199	0.00093868	0.71397	0.00038967	545.7801842980405	81.378	0.53126	81.378	81.057	81.589	0					15	12	2	0	0	0	0.024787	1	10167	10167		49.536	8.1094	1	255620			83502	10440	58220	58313	92500	92500					0.004282510923076188
VGDVFLPI	8	Unmodified	_VGDVFLPI_					0	0	0			REV__ENSG00000108018|ENST00000263054|SORCS1	REV__ENSG00000108018|ENST00000263054|SORCS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.2483825683594	2	430.249829	858.485105	-0.62197	-0.0002676	-2.3874	-0.0010272	-3.0093	-0.0012948	430.24867503810003	37.622	1.2229	37.412	37.114	38.336	-0.2092					68	33	4	0	0	0	0.98906	1	3023	3023		39.021	1.8624	1	2279400	+		83503	21707	58221	58314	92501	92501					0.050201854998590534
VGDVRLEL	8	Unmodified	_VGDVRLEL_					0	0	0		ENST00000509781.5_1_17:47783523-47785306:-|nuORF;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000509781.5_1_17:47783523-47785306:-|nuORF	ENST00000509781.5_1_17:47783523-47785306:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.7607727050781	2	450.761092	899.507631	-0.30836	-0.000139	-1.7355	-0.00078229	-2.0439	-0.00092129	450.76061454673373	38.853	2.0204	38.754	38.166	40.186	-0.098751					168	54	6	0	0	0	0.77775	1	3245	3245		60.972	0.85368	1	138210000			83504	15810	58222	58315	92502	92502					0.053857848974644185
VGDYSCCC	8	Unmodified	_VGDYSCCC_					0	0	0			REV__ENST00000562844.5_1_16:2256163-2257242:+|nuORF	REV__ENST00000562844.5_1_16:2256163-2257242:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.181884765625	2	425.132424	848.250296	-0.059362	-2.5237E-05	-0.073467	-3.1233E-05	-0.13283	-5.647E-05	425.1316080970428	34.649	0.36411	34.442	34.242	34.607	-0.20696					11	8	2	0	0	0	0.027866	1	2553	2553		3.9852	0	1	67557	+		83505	35205	58223	58316	92503	92503					-0.17989939634026086
VGEEMQLTWAQ	11	Unmodified	_VGEEMQLTWAQ_					0	0	0		ENST00000553431.5_1_14:77787511-77795561:+|nuORF;nc|ENSG00000100577|O43708-3|GSTZ1;nc|ENSG00000100577|O43708|GSTZ1;ENSG00000100577|ENST00000216465|GSTZ1;ENST00000555208.1_1_14:77795315-77795561:+|nuORF;nc|ENSG00000100577|O43708-2|GSTZ1;ENST00000555093.1_1_14:77794152-77797535:+|nuORF	ENST00000553431.5_1_14:77787511-77795561:+|nuORF	ENST00000553431.5_1_14:77787511-77795561:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.23138427734375	3	431.204422	1290.59144	-0.44952	-0.00019383	1.4052	0.00060594	0.95571	0.00041211	431.20552132811855	26.021	0.38923	25.998	25.735	26.124	-0.023087					11	8	2	0	0	0	0.024739	1	1283	1283		12.433	2.7867	1	25713			83506	2220	58224	58317	92504	92504					-0.04223471787804556
VGEGKLLEP	9	Unmodified	_VGEGKLLEP_					0	0	0			REV__ENSG00000172680|ENST00000311923|MOS	REV__ENSG00000172680|ENST00000311923|MOS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.310302734375	2	471.26875	940.522947	-0.012602	-5.9388E-06	0.21755	0.00010252	0.20495	9.6585E-05	471.2696311084771	48.578	0.65504	48.578	48.209	48.864	0					30	18	3	0	0	0	0.024288	1	4948	4948		52.937	13.684	1	365600	+		83507	26697	58225	58318	92505	92505					0.05030651694664812
VGESRNYG	8	Unmodified	_VGESRNYG_					0	0	0		nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	nc|ENSG00000135048|Q9UHN6-2|CEMIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2275695800781	2	441.209224	880.403895	-0.42099	-0.00018575	2.3272	0.0010268	1.9062	0.00084105	441.2099733083379	34.823	0.40984	34.874	34.682	35.091	0.050255					15	10	2	0	0	0	0.027866	1	2560	2560		47.916	31.211	1	126210			83508	4851	58226	58319	92506	92506					-0.04109122210195437
VGFFTLVHF	9	Unmodified	_VGFFTLVHF_					0	0	0		nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7918090820312	2	533.789653	1065.56475	-0.12907	-6.8895E-05	4.3253	0.0023088	4.1963	0.0022399	533.7918260845735	19.575	1.1525	19.575	19.268	20.42	0					45	23	3	0	0	0	0.64155	1	441	441		50.025	0	1	499020			83509	9697	58227	58320	92507	92507					0.03459252173843197
VGFSVKNAS	9	Unmodified	_VGFSVKNAS_					0	0	0		ENST00000492880.1_1_3:149213287-149213530:+|nuORF	ENST00000492880.1_1_3:149213287-149213530:+|nuORF	ENST00000492880.1_1_3:149213287-149213530:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.744873046875	2	454.745442	907.476331	0.6119	0.00027826	-1.9362	-0.0008805	-1.3243	-0.00060224	454.74447025012137	101.61	1.8033	101.48	100.73	102.53	-0.13157					101	41	4	0	0	0	0.96322	1	12629	12629		27.882	1.0861	1	2784600			83510	15492	58228	58321	92508	92508					0.01889211863374385
VGGALGMLGA	10	Unmodified	_VGGALGMLGA_					0	0	0			REV__ENSG00000128482|ENST00000461366|RNF112	REV__ENSG00000128482|ENST00000461366|RNF112	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.5472717285156	2	423.231113	844.447674	-0.39736	-0.00016818	-1.504	-0.00063653	-1.9013	-0.00080471	423.2307576168539	29.35	0.17075	29.178	29.113	29.284	-0.17258					5	3	2	0	0	0	0.03519	1	1783	1783		12.959	0.75233	1	38678	+		83511	22983	58229	58322	92509	92509					0.019227709625852185
VGGAQHSLR	9	Unmodified	_VGGAQHSLR_					0	0	0		ENST00000247668.6_1_9:139820478-139821042:+|nuORF	ENST00000247668.6_1_9:139820478-139821042:+|nuORF	ENST00000247668.6_1_9:139820478-139821042:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.7559814453125	2	462.754133	923.493713	0.5585	0.00025845	3.5479	0.0016418	4.1064	0.0019003	462.75574290148563	40.466	1.5802	40.354	39.792	41.372	-0.11222					124	43	5	0	0	0	0.53979	1	3587	3587		56.721	3.3696	1	25791000			83512	11328	58230	58323	92510	92510					0.028905521890465025
VGGFLHSV	8	Unmodified	_VGGFLHSV_					0	0	0		ENSG00000237388|ENST00000446524|OR4A47	ENSG00000237388|ENST00000446524|OR4A47	ENSG00000237388|ENST00000446524|OR4A47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.2685852050781	2	408.224146	814.433738	-0.018194	-7.4273E-06	3.7345	0.0015245	3.7163	0.0015171	408.2241004817962	28.881	0.46525	28.884	28.589	29.055	0.0031357					18	10	2	0	0	0	0.027866	1	1673	1673		28.254	7.7724	1	96866			83513	10745	58231	58324	92511	92511					0.01909861525814449
VGGGARAGQPV	11	Unmodified	_VGGGARAGQPV_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2830505371094	2	484.76724	967.519927	-0.67234	-0.00032593	0.87976	0.00042648	0.20742	0.00010055	484.76744816353585	21.795	0.80071	21.795	21.491	22.291	0					27	16	2	0	0	0	0.024762	1	671	671		30.318	0	1	672750			83514	822	58232	58325	92512	92512					0.034868213605250276
VGGGGGGA	8	Unmodified	_VGGGGGGA_					0	0	0		nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	nc|ENSG00000113389|P17342-2|NPR3	nc|ENSG00000113389|P17342-2|NPR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2384643554688	1	531.252151	530.244875	-0.61476	-0.00032659	-2.5665	-0.0013635	-3.1813	-0.0016901	531.2501676506416	40.277	0.18609	40.052	39.928	40.114	-0.225					6	4	2	0	0	0	0.027866	1	3451	3451		10.185	0	1	44655			83515	3290	58233	58326	92513	92513					-0.039037910476736215
VGGGQPPAR	9	Unmodified	_VGGGQPPAR_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|39|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|20|2|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|23|2|sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|26|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|25|2|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|39|3|sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|7|1|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|40|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|7|1|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|39|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|39|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2458190917969	2	419.730126	837.4457	0.5539	0.00023249	0.39349	0.00016516	0.94739	0.00039765	419.7300327457587	19.63	0.61397	19.63	19.414	20.028	0					16	12	2	0	0	0	0.024487	1	476	476		24.203	15.971	1	26563			83516	37999	58234	58327	92514	92514					0.02047478268980285
VGGGQPPAR	9	Unmodified	_VGGGQPPAR_					0	0	0		SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|39|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|20|2|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|23|2|sense;SVA_F_dup121|chr2:96460830-96461922:+|1.3574831860865415|0.0330649849408489|5.36|512.0|26|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|25|2|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|39|3|sense;SVA_F_dup361|chr7:1037298-1038651:+|1.345362213143661|0.1508264377577863|3.16|519.0|7|1|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|40|3|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|7|1|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|39|3|sense	SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|39|3|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	419.730126	837.4457	-0.13471	-5.6543E-05	0.52011	0.00021831	0.3854	0.00016176	419.73017133101513	19.846	0.6685	19.727	19.446	20.115	-0.11872	0.048507	5.7499E-05	NaN	24.203	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18095			83517	37999	58234	58327							0.02047478268980285
VGGGVRLLP	9	Unmodified	_VGGGVRLLP_					0	0	0		ENST00000264025.7_1_11:119534775-119534964:-|nuORF	ENST00000264025.7_1_11:119534775-119534964:-|nuORF	ENST00000264025.7_1_11:119534775-119534964:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.24603271484375	2	434.27417	866.533787	0.39316	0.00017074	-3.8198	-0.0016588	-3.4266	-0.0014881	434.27448180468025	24.017	0.3168	24.094	23.957	24.274	0.077402					9	6	2	0	0	0	0.024412	1	973	973		40.573	18.613	1	10650			83518	11548	58235	58328	92515	92515					0.09518098859598467
VGGIDVRMD	9	Unmodified	_VGGIDVRMD_					0	0	0		ENSG00000092345|ENST00000399444|DAZL;nc|ENSG00000092345|Q92904-2|DAZL	ENSG00000092345|ENST00000399444|DAZL	ENSG00000092345|ENST00000399444|DAZL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.8008117675781	2	481.242209	960.469866	-0.66452	-0.00031979	3.4282	0.0016498	2.7637	0.00133	481.2421028139412	93.984	0.81799	93.99	93.391	94.209	0.0059814					24	19	2	0	0	0	0.024021	1	11896	11896		49.442	3.4896	1	61568			83519	1989	58236	58329	92516	92516					-0.011950493596373235
VGGIPIRRVI	10	Unmodified	_VGGIPIRRVI_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2902221679688	2	540.356025	1078.6975	-0.65131	-0.00035194	3.4159	0.0018458	2.7646	0.0014939	540.3564419561634	53.346	0.17235	53.346	53.232	53.404	0					9	4	3	0	0	0	0.03519	1	5749	5749		23.042	12.177	1	190720	+		83520	22635	58237	58330	92517	92517					0.16129696630491708
VGGKKITE	8	Unmodified	_VGGKKITE_					0	0	0			REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	REV__GRID2|p.P593Hfs*8|1|0.37|ENSG00000152208|chr4:93455890-93455890|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	416.5580139160156	2	416.25036	830.486168	0.061384	2.5551E-05	-0.077427	-3.2229E-05	-0.016043	-6.6779E-06	416.25022290968366	24.663	0.4451	24.663	24.429	24.874	0					11	9	2	0	0	0	0.027866	1	1077	1077		15.642	0	1	37585	+		83521	24821	58238	58331	92518	92518					0.06414399868742748
VGGKKKGR	8	Unmodified	_VGGKKKGR_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10;ENST00000593502.5_1_19:40715047-40719145:+|nuORF	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2608337402344	2	415.271961	828.52937	1.3295	0.00055211	-2.5192	-0.0010462	-1.1897	-0.00049404	415.270057776626	20.371	0.29558	20.44	20.316	20.612	0.068901					7	5	2	0	0	0	0.027866	1	474	474		19.36	4.6959	1	17441			83522	4453	58239	58332	92519	92519					0.10824634436710312
VGGLAARKGG	10	Unmodified	_VGGLAARKGG_					0	0	0			REV__ENST00000327470.4_1_11:22647115-22647214:-|nuORF	REV__ENST00000327470.4_1_11:22647115-22647214:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.26641845703125	2	443.266876	884.519199	0.0095454	4.2312E-06	0.22489	9.9684E-05	0.23443	0.00010392	443.2668808099724	85.766	1.0554	85.708	85.355	86.411	-0.05761					65	24	4	0	0	0	1.1237	1	10723	10723		23.042	1.0826	1	1292400	+		83523	30416	58240	58333	92520	92520					0.07232026711471917
VGGRHVALL	9	Unmodified	_VGGRHVALL_					0	0	0		ENST00000339157.9_1_20:25281118-25281484:-|nuORF	ENST00000339157.9_1_20:25281118-25281484:-|nuORF	ENST00000339157.9_1_20:25281118-25281484:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.7693176269531	2	461.285069	920.555585	0.33873	0.00015625	-1.0888	-0.00050223	-0.75004	-0.00034598	461.28431832979936	39.911	0.6201	39.911	39.661	40.281	0					35	16	3	0	0	0	0.024293	1	3507	3507		42.474	0	1	1192600			83524	12452	58241	58334	92521	92521					0.09212903608181477
VGGRSVAR	8	Unmodified	_VGGRSVAR_					0	0	0		ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.5546875	2	401.238119	800.461684	1.6812	0.00067458	3.3416	0.0013408	5.0229	0.0020154	401.2392979041024	26.965	0.53078	27.046	26.714	27.245	0.081293					17	13	2	0	0	0	0.027866	1	1327	1327		12.959	4.7279	1	75259			83525	12223	58242	58335	92522	92522					0.053471845058993495
VGGSEGTKLD	10	Unmodified	_VGGSEGTKLD_					0	0	0		ENST00000582245.1_1_17:28951467-28951551:+|nuORF	ENST00000582245.1_1_17:28951467-28951551:+|nuORF	ENST00000582245.1_1_17:28951467-28951551:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.76800537109375	2	481.743096	961.47164	1.4436	0.00069544	3.1625	0.0015235	4.6061	0.002219	481.7444305884787	37.184	0.91147	37.184	36.685	37.596	0					33	23	3	0	0	0	0.03519	1	2957	2957		30.318	7.2752	1	449870			83526	17176	58243	58336	92523	92523					-0.010637170700420029
VGGSEGTKLD	10	Unmodified	_VGGSEGTKLD_					0	0	0		ENST00000582245.1_1_17:28951467-28951551:+|nuORF	ENST00000582245.1_1_17:28951467-28951551:+|nuORF	ENST00000582245.1_1_17:28951467-28951551:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	481.743096	961.47164	-0.16307	-7.856E-05	4.8297	0.0023267	4.6667	0.0022481	481.7452169932659	37.172	0.68211	37.205	36.918	37.6	0.032269	0.010331	0.00051182	NaN	23.523	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401980			83527	17176	58243	58336							-0.010637170700420029
VGGSGIRVS	9	Unmodified	_VGGSGIRVS_					0	0	0			REV__CON__P19001	REV__CON__P19001	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.23846435546875	2	416.237784	830.461016	0.017107	7.1205E-06	2.0643	0.00085923	2.0814	0.00086635	416.2384827656349	21.809	1.312	21.809	21.491	22.803	0					59	27	4	0	0	0	0.72875	1	716	716		44.117	0	1	569180	+	+	83528	19556	58244	58337	92524	92524					0.03900345066188038
VGGSGIRVS	9	Unmodified	_VGGSGIRVS_					0	0	0			REV__CON__P19001	REV__CON__P19001	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	416.237784	830.461016	-0.068542	-2.853E-05	2.074	0.00086327	2.0054	0.00083474	416.2384853766801	21.846	1.7794	21.757	21.5	23.279	-0.089378	-0.049393	-0.00021029	NaN	44.117	72	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525730	+	+	83529	19556	58244	58337							0.03900345066188038
VGGSGIRVS	9	Unmodified	_VGGSGIRVS_					0	0	0			REV__CON__P19001	REV__CON__P19001	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	416.237784	830.461016	-0.70007	-0.00029139	2.6163	0.001089	1.9162	0.00079761	416.23873726177936	21.781	1.9755	21.852	21.254	23.229	0.071487	0.046139	0.00024119	NaN	44.117	79	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494160	+	+	83530	19556	58244	58337							0.03900345066188038
VGGSRPDL	8	Unmodified	_VGGSRPDL_					0	0	0			REV__ENSG00000162851|ENST00000366514|TFB2M	REV__ENSG00000162851|ENST00000366514|TFB2M	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2388916015625	2	400.716685	799.418816	0.81809	0.00032782	-0.48753	-0.00019536	0.33057	0.00013246	400.7164790741299	27.475	0.36504	27.475	27.361	27.726	0					14	9	2	0	0	0	0.027866	1	1502	1502		11.511	4.3177	1	64739	+		83531	25496	58245	58338	92525	92525					0.011083696578111812
VGGSRPDL	8	Unmodified	_VGGSRPDL_					0	0	0			REV__ENSG00000162851|ENST00000366514|TFB2M	REV__ENSG00000162851|ENST00000366514|TFB2M	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	400.716685	799.418816	1.6878	0.00067634	-0.38086	-0.00015262	1.307	0.00052372	400.71643175282315	27.081	0.43126	27.163	26.996	27.427	0.081291	-0.15626	7.1037E-05	NaN	11.511	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84313	+		83532	25496	58245	58338							0.011083696578111812
VGGSVRLL	8	Unmodified	_VGGSVRLL_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2388916015625	2	400.75307	799.491587	0.94593	0.00037908	0.53879	0.00021592	1.4847	0.00059501	400.75306075077316	27.245	0.39767	27.245	27.073	27.471	0					12	10	2	0	0	0	0.027866	1	1502	1502		7.6903	0	1	72159	+		83533	28535	58246	58339	92526	92526					0.08382123451235657
VGGSVRLL	8	Unmodified	_VGGSVRLL_					0	0	0			REV__ENSG00000203485|ENST00000392634|INF2	REV__ENSG00000203485|ENST00000392634|INF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	400.75307	799.491587	-0.55455	-0.00022224	0.017571	7.0418E-06	-0.53698	-0.0002152	400.7528375516115	27.444	0.28901	27.287	27.145	27.434	-0.15664	0.020819	-0.00030691	NaN	7.6903	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36580	+		83534	28535	58246	58339							0.08382123451235657
VGGTVKLRA	9	Unmodified	_VGGTVKLRA_					0	0	0		ENST00000463001.5_1_1:157765400-157765580:-|nuORF	ENST00000463001.5_1_1:157765400-157765580:-|nuORF	ENST00000463001.5_1_1:157765400-157765580:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7846984863281	2	450.784902	899.55525	-0.71854	-0.00032391	-0.50162	-0.00022612	-1.2202	-0.00055003	450.78482508917403	28.68	2.232	28.68	28.318	30.55	0					135	54	5	0	0	0	0.55828	1	1679	1679		55.504	4.1688	1	30076000			83535	14723	58247	58340	92527	92527					0.10145483888311446
VGGVGYGDS	9	Unmodified	_VGGVGYGDS_					0	0	0		ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	ENSG00000198839|ENST00000361822|ZNF277	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.9229431152344	2	405.68505	809.355547	-0.29899	-0.0001213	2.2977	0.00093216	1.9988	0.00081087	405.687452438326	26.656	0.15111	26.42	26.305	26.456	-0.23603					5	3	2	0	0	0	0.024443	1	1397	1397		26.796	13.021	1	17275			83536	10222	58248	58341	92528	92528					-0.0567561585007752
VGHLKKEL	8	Unmodified	_VGHLKKEL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	462.2875061035156	2	462.287277	922.560001	0.38881	0.00017974	-0.42537	-0.00019664	-0.036555	-1.6899E-05	462.286885027958	22.538	0.65821	22.336	21.903	22.561	-0.20199					30	13	3	0	0	0	0.47665	1	786	786		87.754	32.25	1	509400			83537	1458	58249	58342	92529	92529					0.09562368031083679
VGHLKKEL	8	Unmodified	_VGHLKKEL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	462.287277	922.560001	-0.6167	-0.00028509	0.71714	0.00033153	0.10044	4.6432E-05	462.28747083981415	22.489	0.5514	22.304	22.094	22.646	-0.18539	0.020231	0.00065187	NaN	87.754	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521640			83538	1458	58249	58342							0.09562368031083679
VGINSSRV	8	Unmodified	_VGINSSRV_					0	0	0		ENST00000542244.5_1_12:31227164-31227200:+|nuORF	ENST00000542244.5_1_12:31227164-31227200:+|nuORF	ENST00000542244.5_1_12:31227164-31227200:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	416.2384033203125	2	416.237784	830.461016	0.017107	7.1205E-06	2.0643	0.00085923	2.0814	0.00086635	416.2384827656349	21.809	1.312	21.809	21.491	22.803	0					59	27	4	0	0	0	0.97924	1	729	729		40.573	11.423	1	569180			83539	16450	58250	58343	92530	92530					0.03900345066188038
VGKEKVIG	8	Unmodified	_VGKEKVIG_					0	0	0			REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF	REV__ENST00000579991.2_1_17:56166989-56167148:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.26104736328125	2	415.260728	828.506903	-0.10251	-4.2569E-05	0.38796	0.00016111	0.28545	0.00011854	415.26087388806656	20.504	0.96532	20.4	20.178	21.143	-0.10477					52	19	4	0	0	0	0.6248	1	535	535		73.975	5.1879	1	2920200	+		83540	35510	58251	58344	92531	92531					0.08578990248429363
VGKGKRLP	8	Unmodified	_VGKGKRLP_					0	0	0		nc|ENSG00000175984|Q68D51-3|DENND2C;ENST00000481894.1_1_1:115138166-115167938:-|nuORF;nc|ENSG00000175984|Q68D51-2|DENND2C;ENSG00000175984|ENST00000393274|DENND2C	nc|ENSG00000175984|Q68D51-3|DENND2C	nc|ENSG00000175984|Q68D51-3|DENND2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.7586364746094	2	427.782162	853.549771	-0.22848	-9.7738E-05	1.9008	0.00081312	1.6723	0.00071539	427.7832797045977	41.382	0.27228	41.152	41.041	41.313	-0.2303					9	6	2	0	0	0	0.027866	1	3628	3628		21.702	0	1	32723			83541	18534	58252	58345	92532	92532					0.11713805096496799
VGKGRRRL	8	Unmodified	_VGKGRRRL_					0	0	0		ENST00000593075.1_1_19:36606086-36606371:+|nuORF	ENST00000593075.1_1_19:36606086-36606371:+|nuORF	ENST00000593075.1_1_19:36606086-36606371:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	471.30914306640625	2	471.30941	940.604266	1.5197	0.00071624	-2.1623	-0.0010191	-0.64262	-0.00030287	471.3084331857164	17.339	0.65063	17.185	17.007	17.658	-0.15403					35	12	4	0	0	0	1.0574	1	193	193		20.482	0	1	2941000			83542	17387	58253	58346	92533	92533					0.13158816967927578
VGKKKKKTKGP	11	Unmodified	_VGKKKKKTKGP_					0	0	0		PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant;ENSG00000100764|ENST00000261303|PSMC1;ENST00000557357.5_1_14:90722941-90730025:+|nuORF;ENST00000554624.5_1_14:90722881-90729792:+|nuORF;ENST00000555679.5_1_14:90722941-90730197:+|nuORF;ENST00000396338.3_1_12:18845807-18846413:+|nuORF	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	PSMC1|p.E401Rfs*11|1|0.09|ENSG00000100764|chr14:90272282-90272283|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	400.2304382324219	3	400.271319	1197.79213	0.2381	9.5304E-05	-2.583	-0.0010339	-2.3449	-0.00093859	400.2704118737938	22.038	0.23959	21.963	21.89	22.13	-0.075296					7	4	2	0	0	0	0.02476	1	739	739		45.908	8.0966	1	9457.7			83543	2245	58254	58347	92534	92534					0.20114210381825615
VGKKRPVA	8	Unmodified	_VGKKRPVA_					0	0	0		ENST00000531381.1_1_11:121972385-121972643:-|nuORF	ENST00000531381.1_1_11:121972385-121972643:-|nuORF	ENST00000531381.1_1_11:121972385-121972643:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.7585754394531	2	427.782162	853.549771	0.058348	2.496E-05	-1.312	-0.00056127	-1.2537	-0.00053631	427.78173915949645	41.216	0.22883	41.08	40.908	41.137	-0.13553					7	5	2	0	0	0	0.027866	1	3616	3616		54.765	35.405	1	39391			83544	16258	58255	58348	92535	92535					0.11713805096508167
VGKRCMEI	8	Unmodified	_VGKRCMEI_					0	0	0		ENSG00000189433|ENST00000339480|GJB4	ENSG00000189433|ENST00000339480|GJB4	ENSG00000189433|ENST00000339480|GJB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	468.24517822265625	2	468.243698	934.472843	0.2011	9.4162E-05	2.1461	0.0010049	2.3472	0.001099	468.2445715077833	103.12	2.3598	103.12	102.32	104.68	0.0054245					123	59	5	0	0	0	0.97924	1	13163	13163		40.573	7.057	1	6608800			83545	9814	58256	58349	92536	92536					0.002985024935014735
VGKRVSPKV	9	Unmodified	_VGKRVSPKV_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.313826	968.613099	-0.73355	-0.000356	0.35686	0.00017319	-0.37669	-0.00018281	485.3138184753033	44.155	1.6502	44.192	43.923	45.573	0.036903					127	47	5	0	0	0	0.42604	1	4127	4127		64.207	0.901	1	37463000	+		83546	19892	58257	58350	92537	92537					0.12753745813756723
VGKSVIAK	8	Unmodified	_VGKSVIAK_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENST00000602588.1_2_2:84885442-84924911:+|nuORF	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5149230957031	2	401.263271	800.511988	0.53166	0.00021333	-0.27782	-0.00011148	0.25384	0.00010185	401.26312656309693	24.548	0.32949	24.333	24.177	24.506	-0.2151					12	7	2	0	0	0	0.027866	1	1076	1076		24.203	0	1	109410			83547	3446	58258	58351	92538	92538					0.10375294111042876
VGKVGKKL	8	Unmodified	_VGKVGKKL_					0	0	0			REV__ENST00000484081.1_1_2:225370642-225376119:-|nuORF	REV__ENST00000484081.1_1_2:225370642-225376119:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.1986389160156	2	414.786913	827.559273	-0.39059	-0.00016201	1.0106	0.0004192	0.62005	0.00025719	414.7872791974846	20.843	0.34717	20.619	20.415	20.762	-0.22344					11	6	2	0	0	0	0.027866	1	576	576		20.482	11.66	1	32661	+		83548	33529	58259	58352	92539	92539					0.1385957338203525
VGKVLLAL	8	Unmodified	_VGKVLLAL_					0	0	0		ENST00000507834.3_1_4:86167663-86168062:+|nuORF	ENST00000507834.3_1_4:86167663-86168062:+|nuORF	ENST00000507834.3_1_4:86167663-86168062:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.6959228515625	2	406.783839	811.553125	0.30868	0.00012557	3.2678	0.0013293	3.5765	0.0014548	406.78502015723956	36.796	0.40172	36.579	36.368	36.769	-0.21661					14	9	2	0	0	0	0.027866	1	2887	2887		29.842	0	1	57407			83549	15770	58260	58353	92540	92540					0.13981055150509292
VGKVMIAKH	9	Unmodified	_VGKVMIAKH_					0	0	0			REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7958068847656	2	491.796955	981.579357	-0.20623	-0.00010142	-1.9893	-0.00097835	-2.1956	-0.0010798	491.7957748473887	47.704	1.5509	47.704	46.623	48.174	0					133	44	4	0	0	0	0.92825	1	4810	4810		30.504	6.3009	1	6134900	+		83550	23504	58261	58354	92541	92541					0.08783001050335315
VGKVMIAKH	9	Unmodified	_VGKVMIAKH_					0	0	0			REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7959899902344	2	491.796955	981.579357	-0.29263	-0.00014392	-1.9493	-0.00095868	-2.242	-0.0011026	491.7958180674967	47.843	1.5335	47.69	46.659	48.193	-0.153					136	43	4	0	0	0	0.83071	1	4877	4877		37.159	0.13063	1	6197300	+		83551	23504	58261	58354	92542	92542					0.08783001050335315
VGKVMIAKH	9	Unmodified	_VGKVMIAKH_					0	0	0			REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	REV__ENST00000468639.5_1_9:75766818-75774345:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7958679199219	2	491.796955	981.579357	-0.043829	-2.1555E-05	-2.2081	-0.0010859	-2.2519	-0.0011075	491.79569659030346	55.146	1.8896	54.94	54.318	56.207	-0.20613					161	51	4	0	0	0	0.92825	1	5899	5899		30.504	1.3541	1	3172100	+		83552	23504	58261	58354	92543	92543					0.08783001050335315
VGKYFWPRITK	11	Unmodified	_VGKYFWPRITK_					0	0	0		ENST00000511405.1_1_5:111575355-111600594:-|nuORF;ENSG00000129595|ENST00000261486|EPB41L4A	ENST00000511405.1_1_5:111575355-111600594:-|nuORF	ENST00000511405.1_1_5:111575355-111600594:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.802978515625	3	465.602957	1393.78704	-1.1844	-0.00055145	-1.8007	-0.00083841	-2.9851	-0.0013899	465.60201648720846	28.997	0.56473	28.752	28.534	29.099	-0.24524					18	12	2	0	0	0	0.024809	1	1735	1735		12.433	0	1	90262			83553	4359	58262	58355	92544	92544					0.10589906519203396
VGLAMGLIR	9	Oxidation (M)	_VGLAM(Oxidation (M))GLIR_		VGLAM(1)GLIR		VGLAM(92)GLIR	0	0	1		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.28155517578125	2	473.281137	944.547722	-0.013013	-6.1587E-06	0.20769	9.8295E-05	0.19468	9.2137E-05	473.2810018157535	65.609	0.744	65.368	65.045	65.789	-0.24145					40	17	3	0	0	0	0.18276	1	7497	7497		92.191	8.9034	1	1088300			83554	2146	58263	58356	92545	92545		78			0.07323008296407352
VGLAMGLIR	9	Oxidation (M)	_VGLAM(Oxidation (M))GLIR_					0	0	1		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	473.281137	944.547722	0.20961	9.9205E-05	-1.839	-0.00087035	-1.6294	-0.00077114	473.2799062776773	65.3	0.27104	65.3	65.055	65.326	0	-0.034566	-0.0023117	NaN	92.191	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2020800			83555	2146	58263	58356				78			0.07323008296407352
VGLAMGLIR	9	Oxidation (M)	_VGLAM(Oxidation (M))GLIR_					0	0	1		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	473.281137	944.547722	-1.11	-0.00052533	1.1036	0.0005223	-0.0064081	-3.0329E-06	473.2815250605979	65.546	0.74036	65.333	65.094	65.834	-0.21327	-0.0014185	0.00047356	NaN	92.191	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1241800			83556	2146	58263	58356				78			0.07323008296407352
VGLAMGLIR	9	Oxidation (M)	_VGLAM(Oxidation (M))GLIR_					0	0	1		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	473.281137	944.547722	-0.62122	-0.00029401	0.54782	0.00025927	-0.073406	-3.4742E-05	473.28125591307196	65.589	0.61737	65.338	65.027	65.644	-0.25112	0.0030537	-5.2494E-05	NaN	92.191	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247400			83557	2146	58263	58356				78			0.07323008296407352
VGLAWVDV	8	Unmodified	_VGLAWVDV_					0	0	0			REV__nc|ENSG00000130822|Q6P2M8-3|PNCK	REV__nc|ENSG00000130822|Q6P2M8-3|PNCK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.22674560546875	2	429.739628	857.464704	-0.011509	-4.9457E-06	-1.6901	-0.00072629	-1.7016	-0.00073124	429.73887966492083	45.331	0.13017	45.12	45.022	45.153	-0.21109					5	3	2	0	0	0	0.027866	1	4273	4273		29.842	1.9593	1	39625	+		83558	23160	58264	58357	92546	92546					0.03027014840040465
VGLCLKFA	8	Unmodified	_VGLCLKFA_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	425.20208740234375	2	425.746399	849.478245	-0.38684	-0.0001647	0.67531	0.00028751	0.28847	0.00012281	425.7463621406916	34.473	0.63189	34.298	33.859	34.491	-0.17557					22	15	2	0	0	0	0.027866	1	2515	2515		26.796	1.3459	1	64757	+		83559	29106	58265	58358	92547	92547					0.04748549347618791
VGLCTLRA	8	Unmodified	_VGLCTLRA_					0	0	0			REV__ENSG00000111845|ENST00000379568|PAK1IP1	REV__ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.5576477050781	2	416.739105	831.463658	-0.94777	-0.00039497	-1.9201	-0.00080016	-2.8678	-0.0011951	416.7377958519908	24.73	0.58192	24.683	24.398	24.98	-0.047146					20	12	2	0	0	0	0.027866	1	1066	1066		25.45	11.675	1	78628	+		83560	21950	58266	58359	92548	92548					0.0411847719948355
VGLDPSPD	8	Unmodified	_VGLDPSPD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.19622802734375	2	400.195251	798.375948	0.93276	0.00037329	-0.82559	-0.0003304	0.10717	4.2888E-05	400.1951375684852	80.381	1.1826	80.143	79.789	80.971	-0.23784					68	28	3	0	0	0	0.94001	1	9619	9619		46.766	6.1938	1	6749300			83561	8901	58267	58360	92549	92549					-0.03130445190288356
VGLDPSPD	8	Unmodified	_VGLDPSPD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	400.1962585449219	2	400.195251	798.375948	1.3624	0.00054521	-0.039597	-1.5847E-05	1.3228	0.00052936	400.19566925186354	83.823	1.1063	83.611	83.221	84.327	-0.21159					67	25	4	0	0	0	0.98906	1	10130	10130		39.021	1.8624	1	3795100			83562	8901	58267	58360	92550	92550					-0.03130445190288356
VGLDPSPD	8	Unmodified	_VGLDPSPD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.19708251953125	2	400.195251	798.375948	1.6964	0.00067887	-2.0251	-0.00081042	-0.3287	-0.00013154	400.1946294840402	83.512	1.0624	83.343	83.033	84.096	-0.16916					58	24	3	0	0	0	0.98906	2	10069	10069;10078		39.021	1.8624	1	4784400			83563	8901	58267	58360	92551;92552	92551					-0.03130445190288356
VGLDPSPD	8	Unmodified	_VGLDPSPD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	400.19647216796875	2	400.195251	798.375948	-0.36218	-0.00014494	-2.2745	-0.00091024	-2.6367	-0.0010552	400.1941234050417	80.162	1.196	80.016	79.701	80.897	-0.146					62	28	3	0	0	0	0.98906	1	9582	9582		39.021	1.8624	1	1977600			83564	8901	58267	58360	92553	92553					-0.03130445190288356
VGLDPSPD	8	Unmodified	_VGLDPSPD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MSMS	OPSCC_40_ClassI_Rep-3	6	400.1965026855469	2	400.195251	798.375948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.804	1	83.666	83.166	84.166	-0.1386								0	0	0	0.76268	1	10111	10111		37.028	7.1869	1				83565	8901	58267	58360	92554	92554					-0.03130445190288356
VGLGPHVQ	8	Unmodified	_VGLGPHVQ_					0	0	0			REV__ENST00000338483.6_1_22:38610719-38611061:+|nuORF	REV__ENST00000338483.6_1_22:38610719-38611061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	403.1878662109375	2	403.729595	805.444637	0.6303	0.00025447	0.30612	0.00012359	0.93642	0.00037806	403.7294802909582	36.767	0.40172	36.55	36.368	36.769	-0.21661					16	9	2	0	0	0	0.027866	1	2878	2878		13.775	0	1	141430	+		83566	30585	58268	58361	92555	92555					0.034132639000858944
VGLGRGATT	9	Unmodified	_VGLGRGATT_					0	0	0		ENST00000361246.6_1_14:103523571-103523724:-|nuORF	ENST00000361246.6_1_14:103523571-103523724:-|nuORF	ENST00000361246.6_1_14:103523571-103523724:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.2384338378906	2	416.237784	830.461016	2.0395	0.00084891	-0.0048	-1.9979E-06	2.0347	0.00084691	416.237657627207	19.773	1.6125	19.839	19.587	21.2	0.066195					66	32	3	0	0	0	0.92825	1	433	433		30.504	1.3541	1	419820			83567	12789	58269	58362	92556	92556					0.03900345066176669
VGLHALRA	8	Unmodified	_VGLHALRA_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	417.8589782714844	2	418.758687	835.502821	-0.054021	-2.2622E-05	1.289	0.00053977	1.2349	0.00051714	418.75902388055584	32.002	0.55068	32.002	31.749	32.3	0					28	13	3	0	0	0	0.027866	1	2193	2193		20.482	15.395	1	477300	+		83568	25654	58270	58363	92557	92557					0.078489455453564
VGLHALRA	8	Unmodified	_VGLHALRA_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	418.758687	835.502821	-0.20559	-8.6093E-05	1.4865	0.00062247	1.2809	0.00053638	418.75910940784246	31.936	0.63598	31.948	31.663	32.299	0.011797	0.019141	0.00023794	NaN	20.482	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435060	+		83569	25654	58270	58363							0.078489455453564
VGLHALRA	8	Unmodified	_VGLHALRA_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	418.758687	835.502821	-0.20727	-8.6796E-05	0.87969	0.00036838	0.67242	0.00028158	418.7588995787657	31.768	0.5995	31.837	31.606	32.206	0.068962	-0.092086	-0.00027024	NaN	20.482	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442670	+		83570	25654	58270	58363							0.078489455453564
VGLHLPTL	8	Unmodified	_VGLHLPTL_					0	0	0		nc|ENSG00000211791|A0A0B4J235|TRAV13-2	nc|ENSG00000211791|A0A0B4J235|TRAV13-2	nc|ENSG00000211791|A0A0B4J235|TRAV13-2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	424.8623046875	2	425.263271	848.511988	0.1978	8.4119E-05	0.26366	0.00011213	0.46147	0.00019624	425.2632662255501	29.937	0.67521	29.787	29.337	30.012	-0.14952					21	15	2	0	0	0	0.027866	1	1849	1849		42.474	15.678	1	117040			83571	18698	58271	58364	92558	92558					0.08167294111046886
VGLIRNLAL	9	Unmodified	_VGLIRNLAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.81610107421875	2	484.816202	967.617851	-0.14146	-6.8582E-05	0.36185	0.00017543	0.22039	0.00010685	484.8163290937619	66.633	0.5708	66.385	66.021	66.592	-0.24839					46	17	4	0	0	0	0.25032	3	7624	7624;7634;7657		82.305	10.324	1	20963000			83572	7775	58272	58365	92559;92560;92561	92559					0.13274629956492845
VGLIRNLAL	9	Unmodified	_VGLIRNLAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	484.8165283203125	2	484.816202	967.617851	-0.57331	-0.00027795	0.41073	0.00019913	-0.16259	-7.8825E-05	484.816425412224	66.574	0.62075	66.35	65.986	66.607	-0.22374					52	17	5	0	0	0	0.25032	4	7642	7621;7630;7642;7654		82.305	17.944	1	14085000			83573	7775	58272	58365	92562;92563;92564;92565	92564					0.13274629956492845
VGLIRNLAL	9	Unmodified	_VGLIRNLAL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.8164367675781	2	484.816202	967.617851	-0.18626	-9.0303E-05	0.022873	1.1089E-05	-0.16339	-7.9214E-05	484.8162082535944	66.563	0.57334	66.318	65.972	66.545	-0.24517					50	16	4	0	0	0	0.17455	4	7613	7603;7613;7624;7635		94.006	18.999	1	12870000			83574	7775	58272	58365	92566;92567;92568;92569	92567					0.13274629956492845
VGLKQGVI	8	Unmodified	_VGLKQGVI_					0	0	0			REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.5873718261719	2	407.263271	812.511988	-0.28769	-0.00011716	0.59358	0.00024174	0.30589	0.00012458	407.263346792575	25.932	0.60036	25.696	25.467	26.067	-0.23603					40	15	4	0	0	0	0.027866	1	1261	1261		35.201	0	1	2299700	+		83575	33552	58273	58366	92570	92570					0.09823294111038194
VGLKQGVI	8	Unmodified	_VGLKQGVI_					0	0	0			REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	REV__ENST00000485029.5_1_3:47545746-47555080:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.5874938964844	2	407.263271	812.511988	-0.91167	-0.00037129	1.0971	0.0004468	0.18541	7.5509E-05	407.2635522597993	25.813	0.7926	25.641	25.365	26.157	-0.17151					45	21	4	0	0	0	0.027866	1	1217	1217		35.201	8.4046	1	2092300	+		83576	33552	58273	58366	92571	92571					0.09823294111038194
VGLKSAVAE	9	Unmodified	_VGLKSAVAE_					0	0	0			REV__SCGB1D2|p.A58S|1|0.1|ENSG00000124935|chr11:62243405-62243405|G/T|missense_variant	REV__SCGB1D2|p.A58S|1|0.1|ENSG00000124935|chr11:62243405-62243405|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	437.2554016113281	2	437.255643	872.496732	-0.79637	-0.00034822	1.2273	0.00053666	0.43098	0.00018845	437.2560159374034	62.171	0.57781	62.171	61.868	62.446	0					36	18	3	0	0	0	0.047345	1	7235	7235		129.68	0	1	3267100	+		83577	37463	58274	58367	92572	92572					0.05538382523184282
VGLKWKFTLF	10	Unmodified	_VGLKWKFTLF_					0	0	0			REV__ENST00000477649.1_1_X:150565000-150565102:+|nuORF	REV__ENST00000477649.1_1_X:150565000-150565102:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8690795898438	2	619.868434	1237.72232	0.19629	0.00012167	1.4718	0.00091231	1.6681	0.001034	619.8690521890022	104.69	0.53136	104.69	104.4	104.93	0.00096893					43	16	4	0	0	0	1.089	1	13411	13411		34.173	7.4796	1	199580	+		83578	33340	58275	58368	92573	92573					0.11296331713219843
VGLKWKFTLF	10	Unmodified	_VGLKWKFTLF_					0	0	0			REV__ENST00000477649.1_1_X:150565000-150565102:+|nuORF	REV__ENST00000477649.1_1_X:150565000-150565102:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8697509765625	2	619.868434	1237.72232	-0.14808	-9.1793E-05	2.1901	0.0013576	2.042	0.0012658	619.8695806131489	97.172	1.0765	97.011	96.684	97.76	-0.16106					51	23	3	0	0	0	1.1265	1	12039	12039		24.519	0.31644	1	207720	+		83579	33340	58275	58368	92574	92574					0.11296331713219843
VGLNIKKV	8	Unmodified	_VGLNIKKV_					0	0	0		ENST00000447052.1_1_21:24762753-24763314:+|nuORF	ENST00000447052.1_1_21:24762753-24763314:+|nuORF	ENST00000447052.1_1_21:24762753-24763314:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7614440917969	2	435.792195	869.569838	-0.081058	-3.5325E-05	1.2155	0.00052972	1.1345	0.00049439	435.79278884444255	34.506	0.34034	34.506	34.25	34.59	0					15	8	2	0	0	0	0.027866	1	2553	2553		14.664	5.8418	1	67653			83580	14462	58276	58369	92575	92575					0.12983556036465416
VGLPAAGKTTW	11	Unmodified	_VGLPAAGKTTW_					0	0	0		HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.8090209960938	2	550.808574	1099.60259	-0.91772	-0.00050549	0.39316	0.00021655	-0.52456	-0.00028893	550.808844397368	55.868	1.717	55.712	55.08	56.797	-0.15656					140	45	4	0	0	0	5.2252E-07	10	6041	5972;5981;5993;6005;6017;6029;6041;6053;6065;6078		177.3	81.49	1	41552000			83581	2658	58277	58370	92576;92577;92578;92579;92580;92581;92582;92583;92584;92585	92582					0.056777183686335775
VGLPAAGKTTW	11	Unmodified	_VGLPAAGKTTW_					0	0	0		HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.80810546875	2	550.808574	1099.60259	-0.017228	-9.4893E-06	-0.58703	-0.00032334	-0.60426	-0.00033283	550.8082978781943	55.955	2.0895	55.739	55.143	57.233	-0.21607					149	56	4	0	0	0	5.2252E-07	9	6052	5992;6004;6016;6028;6040;6052;6065;6077;6090		177.3	78.292	1	41754000			83582	2658	58277	58370	92586;92587;92588;92589;92590;92591;92592;92593;92594	92591					0.056777183686335775
VGLPAAGKTTW	11	Unmodified	_VGLPAAGKTTW_					0	0	0		HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	HNRNPUL1|p.K448Rfs*17|1|0.36|ENSG00000105323|chr19:41294411-41294411|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.8082885742188	2	550.808574	1099.60259	-1.2104	-0.00066668	0.45593	0.00025113	-0.75442	-0.00041554	550.808861135274	55.98	1.6818	55.765	55.104	56.785	-0.21551					137	44	4	0	0	0	1.0518E-09	11	6028	5971;5980;5992;6004;6016;6028;6040;6053;6065;6077;6090		204.42	115.4	1	40443000			83583	2658	58277	58370	92595;92596;92597;92598;92599;92600;92601;92602;92603;92604;92605	92600					0.056777183686335775
VGLSSLGAQ	9	Unmodified	_VGLSSLGAQ_					0	0	0		nc|ENSG00000118705|P04844-2|RPN2;ENSG00000118705|ENST00000237530|RPN2;ENST00000456102.5_1_20:35806883-35832332:+|nuORF;ENST00000462163.1_1_20:35807747-35832332:+|nuORF	nc|ENSG00000118705|P04844-2|RPN2	nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.7094421386719	2	416.232168	830.449782	-0.2902	-0.00012079	-1.4535	-0.00060498	-1.7437	-0.00072577	416.2323614373674	26.317	0.62173	26.148	25.928	26.55	-0.16816					32	16	3	0	0	0	0.023635	1	1361	1361		66.429	15.094	1	252500			83584	3700	58278	58371	92606	92606					0.02777522972053248
VGLTIPILTL	10	Unmodified	_VGLTIPILTL_					0	0	0			REV__ENSG00000175782|ENST00000398004|SLC35E3	REV__ENSG00000175782|ENST00000398004|SLC35E3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.3399047851562	2	520.341718	1038.66888	-0.84823	-0.00044137	-2.3106	-0.0012023	-3.1588	-0.0016437	520.340348831719	23.013	1.1625	23.087	22.791	23.954	0.073954					64	26	4	0	0	0	1.0781	1	823	823		35.618	3.6634	1	869850	+		83585	26971	58279	58372	92607	92607					0.15109534210705533
VGLVNIPTAS	10	Unmodified	_VGLVNIPTAS_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2620849609375	2	485.782025	969.549496	-1.1125	-0.00054041	1.6082	0.00078126	0.49579	0.00024084	485.7824855272854	24.302	0.92489	24.254	23.699	24.623	-0.047146					26	20	2	0	0	0	0.03519	1	1031	1031		49.442	13.823	1	85917			83586	1555	58280	58373	92608	92608					0.06350340585993308
VGLVPPKV	8	Unmodified	_VGLVPPKV_					0	0	0			REV__nc|ENSG00000204231|P28702-3|RXRB	REV__nc|ENSG00000204231|P28702-3|RXRB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.1701354980469	2	404.768189	807.521825	-0.10864	-4.3975E-05	0.42895	0.00017362	0.3203	0.00012965	404.76830695958296	76.045	0.66684	75.876	75.514	76.181	-0.16853					29	16	2	0	0	0	0.027866	1	9014	9014		29.842	8.1392	1	228740	+		83587	28576	58281	58374	92609	92609					0.1103648211642394
VGLVSPLVL	9	Unmodified	_VGLVSPLVL_					0	0	0			REV__ENST00000560371.5_1_14:103373770-103374100:+|nuORF	REV__ENST00000560371.5_1_14:103373770-103374100:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2530212402344	2	448.794404	895.574254	-1.0045	-0.00045081	-3.2411	-0.0014546	-4.2456	-0.0019054	448.79292076479146	25.925	0.25381	25.761	25.544	25.798	-0.16331					8	5	2	0	0	0	0.024541	1	1231	1231		8.2313	0	1	35417	+		83588	35144	58282	58375	92610	92610					0.12229020459369622
VGMIPAPK	8	Unmodified	_VGMIPAPK_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF;ENST00000594773.5_1_19:19112476-19115035:-|nuORF	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2351989746094	2	406.738574	811.462595	0.1352	5.4991E-05	-0.0074277	-3.0211E-06	0.12777	5.197E-05	406.73967306115384	29.102	0.73592	28.93	28.463	29.199	-0.17258					31	16	3	0	0	0	0.027866	1	1769	1769		20.482	12.251	1	74385			83589	1277	58283	58376	92611	92611					0.04932262830573109
VGMIPAPK	8	Unmodified	_VGMIPAPK_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF;ENST00000594773.5_1_19:19112476-19115035:-|nuORF	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	406.738574	811.462595	-0.86606	-0.00035226	4.7275	0.0019229	3.8615	0.0015706	406.74058526864616	29.022	0.64817	28.777	28.363	29.011	-0.24524	-0.060179	0.00070081	NaN	20.482	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57493			83590	1277	58283	58376							0.04932262830573109
VGMITQEEVV	10	Unmodified	_VGMITQEEVV_					0	0	0		ENSG00000235718|ENST00000619721|MFRP	ENSG00000235718|ENST00000619721|MFRP	ENSG00000235718|ENST00000619721|MFRP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.7824096679688	2	552.783907	1103.55326	-0.4896	-0.00027064	-1.8415	-0.0010179	-2.3311	-0.0012886	552.7829241490338	41.564	0.72045	41.333	41.041	41.761	-0.23029					41	18	3	0	0	0	1.1088	1	3661	3661		31.53	4.7337	1	2056800			83591	10734	58284	58377	92612	92612					0.005626422975410605
VGMQWLKT	8	Unmodified	_VGMQWLKT_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-2|FN1;FN1|p.P969Lfs*12|1|0.35|ENSG00000115414|chr2:215406318-215406318|G/-|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.75860595703125	2	481.760038	961.505523	-0.28522	-0.00013741	-2.2489	-0.0010834	-2.5341	-0.0012209	481.75875160152214	21.876	0.89709	21.796	21.509	22.406	-0.080242					43	18	3	0	0	0	0.89627	1	699	699		51.335	1.8939	1	590420			83592	3442	58285	58378	92613	92613					0.023230328880117668
VGMSKWRLCF	10	Unmodified	_VGMSKWRLCF_					0	0	0			REV__nc|ENSG00000165688|Q10713-2|PMPCA	REV__nc|ENSG00000165688|Q10713-2|PMPCA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.54266357421875	3	409.543945	1225.61	0.61019	0.0002499	-4.3202	-0.0017693	-3.71	-0.0015194	409.5423486624834	21.981	1.1252	21.793	21.434	22.559	-0.18894					67	23	4	0	0	0	1.1081	1	727	727		31.634	2.0835	1	2651300	+		83593	36877	58286	58379	92614	92614					0.006224113730695535
VGNASSVLL	9	Unmodified	_VGNASSVLL_					0	0	0			REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.24798583984375	2	430.247818	858.481082	-0.62197	-0.0002676	2.2875	0.00098421	1.6656	0.00071661	430.24867503810003	37.622	1.2229	37.412	37.114	38.336	-0.2092					68	33	4	0	0	0	0.67308	2	3011	3011;3037		47.916	1.9636	1	2279400	+		83594	34555	58287	58380	92615;92616	92615					0.046180960061633414
VGNASSVLL	9	Unmodified	_VGNASSVLL_					0	0	0			REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	430.247818	858.481082	-0.93418	-0.00040193	2.1231	0.00091345	1.1889	0.00051153	430.24873059638054	37.625	0.47998	37.625	37.523	38.003	0	0.039197	0.00022018	NaN	47.916	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152720	+		83595	34555	58287	58380							0.046180960061633414
VGNASSVLL	9	Unmodified	_VGNASSVLL_					0	0	0			REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	430.247818	858.481082	-1.1294	-0.00048594	-4.6916	-0.0020186	-5.8211	-0.0025045	430.2441747556015	37.837	0.27821	37.755	37.57	37.848	-0.082512	0.16959	-0.0056438	NaN	47.916	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58844	+		83596	34555	58287	58380							0.046180960061633414
VGNASSVLL	9	Unmodified	_VGNASSVLL_					0	0	0			REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	430.247818	858.481082	-0.58656	-0.00025237	1.861	0.00080067	1.2744	0.00054831	430.24846232341076	37.883	0.63956	37.915	37.563	38.202	0.032272	0.32955	-5.3818E-06	NaN	47.916	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96765	+		83597	34555	58287	58380							0.046180960061633414
VGNASSVLL	9	Unmodified	_VGNASSVLL_					0	0	0			REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	430.247818	858.481082	0.28713	0.00012354	1.4429	0.00062078	1.73	0.00074432	430.2482917407296	37.615	0.84295	37.422	37.114	37.957	-0.193	-0.16318	-0.00036516	NaN	47.916	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1293600	+		83598	34555	58287	58380							0.046180960061633414
VGNASSVLL	9	Unmodified	_VGNASSVLL_					0	0	0			REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	430.247818	858.481082	-0.7208	-0.00031012	2.485	0.0010692	1.7642	0.00075903	430.24876131140496	37.603	0.89296	37.383	37.037	37.93	-0.2195	-0.2023	0.00053159	NaN	47.916	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1515400	+		83599	34555	58287	58380							0.046180960061633414
VGNISNHQ	8	Unmodified	_VGNISNHQ_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7803649902344	2	434.717216	867.419879	0.038111	1.6568E-05	0.36601	0.00015911	0.40412	0.00017568	434.717206924343	38.432	0.44145	38.214	38.049	38.491	-0.21848					16	11	2	0	0	0	0.027866	1	3149	3149		23.042	4.7181	1	114410			83600	1606	58288	58381	92617	92617					-0.01913415973285737
VGNVWVIA	8	Unmodified	_VGNVWVIA_					0	0	0			REV__ENST00000476486.5_1_7:65444492-65445384:-|nuORF	REV__ENST00000476486.5_1_7:65444492-65445384:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	430.22686767578125	2	429.247621	856.480688	-0.47046	-0.00020194	-4.3971	-0.0018875	-4.8676	-0.0020894	429.2456057463711	44.886	0.4578	44.786	44.554	45.012	-0.099445					20	11	2	0	0	0	0.027866	1	4254	4254		39.021	0	1	279100	+		83601	26418	58289	58382	92618	92618					0.046707210769341145
VGNVWVIA	8	Unmodified	_VGNVWVIA_					0	0	0			REV__ENST00000476486.5_1_7:65444492-65445384:-|nuORF	REV__ENST00000476486.5_1_7:65444492-65445384:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	429.247621	856.480688	-0.14154	-6.0755E-05	-5.1591	-0.0022145	-5.3006	-0.0022753	429.2452871830364	45.038	0.61484	44.827	44.474	45.089	-0.21109	0.028467	-9.9691E-05	NaN	29.842	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217500	+		83602	26418	58289	58382							0.046707210769341145
VGPAPSFRPG	10	Unmodified	_VGPAPSFRPG_					0	0	0		ENST00000394411.8_1_5:146257648-146258181:-|nuORF	ENST00000394411.8_1_5:146257648-146258181:-|nuORF	ENST00000394411.8_1_5:146257648-146258181:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.79534912109375	2	492.766709	983.518865	0.13677	6.7398E-05	4.3093	0.0021235	4.4461	0.0021909	492.7688355928044	24.886	0.31434	24.964	24.777	25.091	0.078344					11	6	2	0	0	0	0.03519	1	1069	1069		30.318	1.1682	1	330330			83603	13487	58290	58383	92619	92619					0.026446069916232773
VGPERKKKV	9	Unmodified	_VGPERKKKV_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.8336181640625	2	520.832383	1039.65021	0.33601	0.00017501	-0.50598	-0.00026353	-0.16997	-8.8524E-05	520.8320546702805	20.835	0.83604	20.904	20.563	21.399	0.068901					42	16	4	0	0	0	0.75397	1	539	539		42.396	1.618	1	459760	+		83604	36693	58291	58384	92620	92620					0.13197417359515384
VGPGGRLR	8	Unmodified	_VGPGGRLR_					0	0	0			REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.2489013671875	2	406.248486	810.48242	2.0091	0.00081618	-1.5127	-0.00061453	0.49635	0.00020164	406.2477457430993	20.901	0.92783	20.969	20.661	21.589	0.068901					39	18	3	0	0	0	1.0017	2	551	551;563		37.028	7.1869	1	186460	+		83605	32782	58292	58385	92621;92622	92621					0.06959774885558545
VGPGGRLR	8	Unmodified	_VGPGGRLR_					0	0	0			REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	406.248486	810.48242	0.13698	5.5646E-05	-0.1298	-5.2729E-05	0.007181	2.9173E-06	406.2484805826555	20.941	0.83457	20.941	20.656	21.491	0	-0.011714	0.00032518	NaN	37.028	46	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152170	+		83606	32782	58292	58385							0.06959774885558545
VGPGGRLR	8	Unmodified	_VGPGGRLR_					0	0	0			REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	406.248486	810.48242	0.10898	4.4271E-05	0.47123	0.00019144	0.5802	0.00023571	406.2485127117805	21.038	0.77895	20.948	20.72	21.499	-0.090094	-0.0050682	0.00081351	NaN	37.028	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176410	+		83607	32782	58292	58385							0.06959774885558545
VGPGGRLR	8	Unmodified	_VGPGGRLR_					0	0	0			REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	REV__ENST00000455580.5_1_2:28974542-28974650:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	406.248486	810.48242	2.0091	0.00081618	-1.5127	-0.00061453	0.49635	0.00020164	406.2477457430993	20.901	0.92783	20.969	20.661	21.589	0.068901	0.016783	-0.00079843	NaN	37.028	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186460	+		83608	32782	58292	58385							0.06959774885558545
VGPGRTET	8	Unmodified	_VGPGRTET_					0	0	0		ENST00000430430.5_1_8:81397991-81398551:+|nuORF	ENST00000430430.5_1_8:81397991-81398551:+|nuORF	ENST00000430430.5_1_8:81397991-81398551:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.2299499511719	2	408.714142	815.413731	-0.41765	-0.0001707	1.4495	0.00059245	1.0319	0.00042175	408.71459007994747	25.267	0.52616	25.233	24.948	25.474	-0.034395					20	12	2	0	0	0	0.027866	1	1125	1125		31.955	3.7006	1	45291			83609	14171	58293	58386	92623	92623					-0.001359342048090184
VGPILKQET	9	Unmodified	_VGPILKQET_					0	0	0		ENST00000560717.5_2_15:65295402-65319196:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.3454895019531	2	492.78985	983.565146	0.89883	0.00044294	-3.4796	-0.0017147	-2.5808	-0.0012718	492.78776934403294	19.581	0.2995	19.381	19.206	19.505	-0.2001					8	5	2	0	0	0	0.024447	1	442	442		40.778	17.736	1	38237			83610	2523	58294	58387	92624	92624					0.07270627103048355
VGPKLPWKL	9	Unmodified	_VGPKLPWKL_					0	0	0		ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.3236694335938	2	519.328945	1036.64334	-1.3268	-0.00068904	-3.1411	-0.0016313	-4.4679	-0.0023203	519.32720664179	51.715	0.6036	51.802	51.511	52.114	0.087006					31	16	2	0	0	0	0.80658	1	5432	5432		38.806	3.6054	1	3730200			83611	6921	58295	58388	92625	92625					0.12648104478921596
VGPKRSVCS	9	Unmodified	_VGPKRSVCS_					0	0	0			REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	REV__ENST00000393640.8_1_16:70414628-70415099:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.2667541503906	2	466.752744	931.490935	1.1562	0.00053965	-0.49383	-0.0002305	0.66235	0.00030915	466.75227827849494	20.115	0.48122	19.915	19.701	20.183	-0.2001					20	9	3	0	0	0	0.024539	1	492	492		27.882	0	1	34519	+		83612	31651	58296	58389	92626	92626					0.02244960739869839
VGPLGQRR	8	Unmodified	_VGPLGQRR_					0	0	0			REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.766845703125	2	441.767043	881.519533	-0.8515	-0.00037616	1.1535	0.00050958	0.30201	0.00013342	441.76740648292235	22.317	1.2359	22.391	21.832	23.068	0.073954					44	25	3	0	0	0	1.0133	1	728	728		35.201	3.2459	1	234650	+		83613	35304	58297	58390	92627	92627					0.07403446431317207
VGPLGQRR	8	Unmodified	_VGPLGQRR_					0	0	0			REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	441.767043	881.519533	-0.12239	-5.4066E-05	0.50386	0.00022259	0.38148	0.00016852	441.7671394650597	22.451	1.0764	22.375	21.89	22.966	-0.075296	-0.11774	-0.00031327	NaN	35.201	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262010	+		83614	35304	58297	58390							0.07403446431317207
VGPLGQRR	8	Unmodified	_VGPLGQRR_					0	0	0			REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	441.767043	881.519533	-0.8515	-0.00037616	1.1535	0.00050958	0.30201	0.00013342	441.76740648292235	22.317	1.2359	22.391	21.832	23.068	0.073954	-0.10213	0.00026072	NaN	35.201	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234650	+		83615	35304	58297	58390							0.07403446431317207
VGPLGQRR	8	Unmodified	_VGPLGQRR_					0	0	0			REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	REV__ENST00000566635.5_1_15:28356911-28362639:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	441.767043	881.519533	-0.57577	-0.00025436	2.1082	0.00093132	1.5324	0.00067696	441.76737905217396	22.898	0.59531	22.713	22.236	22.831	-0.18539	0.21988	0.0011042	NaN	35.201	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21455	+		83616	35304	58297	58390							0.07403446431317207
VGPLVAKGSH	10	Unmodified	_VGPLVAKGSH_					0	0	0			REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	REV__ENST00000345016.9_1_19:2101205-2101811:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.27435302734375	2	482.782359	963.550165	-0.95303	-0.00046011	0.077064	3.7205E-05	-0.87596	-0.0004229	482.78240514876813	30.627	1.1245	30.627	30.176	31.3	0					48	26	3	0	0	0	0.03519	1	1973	1973		62.107	8.756	1	2307000	+		83617	30693	58298	58391	92628	92628					0.06693180025706624
VGPMTLAVLL	10	Unmodified	_VGPMTLAVLL_					0	0	0			REV__nc|ENSG00000197375|O76082-3|SLC22A5	REV__nc|ENSG00000197375|O76082-3|SLC22A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.79278564453125	2	507.306821	1012.59909	-0.37788	-0.0001917	3.9852	0.0020217	3.6073	0.00183	507.30901596075694	44.252	0.16645	44.289	44.209	44.375	0.0369					7	4	2	0	0	0	0.03519	1	4138	4138		38.806	0	1	527690	+		83618	37061	58299	58392	92629	92629					0.09329332270431223
VGPNRPPT	8	Unmodified	_VGPNRPPT_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2279357910156	2	419.232502	836.450451	-0.41683	-0.00017475	0.73346	0.00030749	0.31663	0.00013274	419.23266741092397	26.649	1.7636	26.73	25.337	27.1	0.081293					81	42	3	0	0	0	0.027866	1	1187	1187		35.201	16.876	1	1384500			83619	3953	58300	58393	92630	92630					0.025683624117391446
VGPPGPPGPFG	11	Unmodified	_VGPPGPPGPFG_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.75634765625	2	489.75581	977.497067	-0.31425	-0.00015391	1.2401	0.00060733	0.92583	0.00045343	489.7562457875752	19.827	1.7318	19.708	19.446	21.178	-0.11872					64	35	3	0	0	0	1.0219	1	454	454		31.955	0	1	478210	+		83620	36998	58301	58394	92631	92631					0.007418022430556448
VGPRLGRP	8	Unmodified	_VGPRLGRP_					0	0	0			REV__ENST00000368654.7_1_10:129924452-129924542:-|nuORF	REV__ENST00000368654.7_1_10:129924452-129924542:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.26409912109375	2	426.264136	850.51372	-0.81601	-0.00034784	0.67128	0.00028614	-0.14473	-6.1693E-05	426.2644227504415	23.76	0.93377	23.699	23.229	24.163	-0.06086					65	21	5	0	0	0	1.0239	1	976	976		33.516	5.2613	1	2633000	+		83621	31059	58302	58395	92632	92632					0.08248347919652588
VGPRLGRP	8	Unmodified	_VGPRLGRP_					0	0	0			REV__ENST00000368654.7_1_10:129924452-129924542:-|nuORF	REV__ENST00000368654.7_1_10:129924452-129924542:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.26409912109375	2	426.264136	850.51372	0.098292	4.1898E-05	-0.089843	-3.8297E-05	0.008449	3.6015E-06	426.2640566355832	23.675	0.98676	23.751	23.195	24.182	0.076241					65	22	4	0	0	0	1.0017	1	906	906		37.028	0	1	2570600	+		83622	31059	58302	58395	92633	92633					0.08248347919652588
VGPRPWLDH	9	Unmodified	_VGPRPWLDH_					0	0	0			REV__ENST00000348655.10_1_11:615398-615620:-|nuORF	REV__ENST00000348655.10_1_11:615398-615620:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	538.7835693359375	2	538.785433	1075.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.249	1	29.328	28.828	29.828	0.078344								0	0	0	0.47068	1	1728	1728		56.721	5.5284	1		+		83623	30718	58303	58396	92634	92634					0.021556982572064953
VGPRPWLDH	9	Unmodified	_VGPRPWLDH_					0	0	0			REV__ENST00000348655.10_1_11:615398-615620:-|nuORF	REV__ENST00000348655.10_1_11:615398-615620:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	538.7839965820312	2	538.785433	1075.55631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.339	1	29.417	28.917	29.917	0.078344								0	0	0	0.48579	1	1741	1741		54.776	7.119	1		+		83624	30718	58303	58396	92635	92635					0.021556982572064953
VGPRQYQPG	9	Unmodified	_VGPRQYQPG_					0	0	0			REV__ENST00000448841.5_1_10:104575113-104575296:+|nuORF	REV__ENST00000448841.5_1_10:104575113-104575296:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.8241271972656	2	501.261791	1000.50903	-0.41551	-0.00020828	0.28499	0.00014286	-0.13052	-6.5423E-05	501.2614397557909	33.739	0.42183	33.734	33.486	33.908	-0.0045624					17	10	2	0	0	0	0.024183	1	2422	2422		60.294	5.5293	1	81469	+		83625	32661	58304	58397	92636	92636					0.008794189862328494
VGPRVQRLR	9	Unmodified	_VGPRVQRLR_					0	0	0		ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.8410034179688	2	540.841074	1079.66759	2.2284	0.0012052	-2.443	-0.0013213	-0.21461	-0.00011607	540.8395988288055	18.308	0.63639	18.308	17.99	18.626	0					31	12	4	0	0	0	0.70186	1	275	275		45.952	8.7928	1	304970			83626	10775	58305	58398	92637	92637					0.1309475768516677
VGPRVQRLR	9	Unmodified	_VGPRVQRLR_					0	0	0		ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	ENSG00000240857|ENST00000381249|RDH14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.841074	1079.66759	3.2119	0.0017371	-3.2407	-0.0017527	-0.02883	-1.5592E-05	540.8391951246953	18.52	0.5866	18.583	18.307	18.893	0.063309	0.16069	-0.0015845	NaN	45.952	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179140			83627	10775	58305	58398							0.1309475768516677
VGPRVTLL	8	Unmodified	_VGPRVTLL_					0	0	0			REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.21673583984375	2	427.776545	853.538538	-0.50686	-0.00021682	3.4033	0.0014558	2.8964	0.001239	427.7765600366788	30.155	0.5885	29.977	29.655	30.243	-0.17817					30	13	4	0	0	0	0.027866	1	1861	1861		37.028	24.822	1	130410	+		83628	32187	58306	58399	92638	92638					0.10590983002373378
VGPRVTLL	8	Unmodified	_VGPRVTLL_					0	0	0			REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	427.776545	853.538538	-0.070208	-3.0033E-05	0.41384	0.00017703	0.34363	0.000147	427.77663477643983	30.214	0.5448	29.97	29.779	30.323	-0.24415	-0.033125	-0.0003303	NaN	28.254	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92679	+		83629	32187	58306	58399							0.10590983002373378
VGPRVTLL	8	Unmodified	_VGPRVTLL_					0	0	0			REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	REV__ENST00000421764.1_1_1:145493952-145507392:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.776545	853.538538	0.22789	9.7488E-05	1.5688	0.00067109	1.7967	0.00076858	427.7762644123452	30.212	0.55198	30.063	29.792	30.344	-0.14952	0.059241	0.00065782	NaN	28.254	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131080	+		83630	32187	58306	58399							0.10590983002373378
VGPSHQAKLPD	11	Unmodified	_VGPSHQAKLPD_					0	0	0		ENST00000480342.5_1_1:8525723-8716473:-|nuORF;ENSG00000142599|ENST00000400908|RERE	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.8082275390625	2	574.806562	1147.59857	2.4863	0.0014291	0.22374	0.00012861	2.71	0.0015577	574.8064347990075	17.838	0.88269	17.838	17.598	18.48	0					36	17	3	0	0	0	1.0183	1	223	223		32.751	0	1	171010			83631	5572	58307	58400	92639	92639					0.030676288749418745
VGPSHQAKLPD	11	Unmodified	_VGPSHQAKLPD_					0	0	0		ENST00000480342.5_1_1:8525723-8716473:-|nuORF;ENSG00000142599|ENST00000400908|RERE	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	574.806562	1147.59857	0.38072	0.00021884	2.4741	0.0014221	2.8548	0.001641	574.8078090614657	18.028	0.83729	17.897	17.613	18.45	-0.13147	-0.051904	0.0022788	NaN	32.751	34	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131010			83632	5572	58307	58400							0.030676288749418745
VGPSRYLL	8	Unmodified	_VGPSRYLL_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9;ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF	ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2537841796875	2	452.766178	903.517802	-0.64309	-0.00029117	-2.6817	-0.0012142	-3.3247	-0.0015053	452.7650449188671	20.397	0.19429	20.397	20.274	20.468	0					5	3	2	0	0	0	0.027866	1	533	533		42.474	34.784	1	38823			83633	5309	58308	58401	92640	92640					0.06218392622713509
VGPVQLREQ	9	Unmodified	_VGPVQLREQ_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3104858398438	2	513.290548	1024.56654	-1.3175	-0.00067627	4.0728	0.0020905	2.7553	0.0014143	513.2924243481744	65.006	0.18221	65.006	64.909	65.091	0					7	4	2	0	0	0	0.024397	1	7679	7679		47.657	12.039	1	114410			83634	18518	58309	58402	92641	92641					0.055242611917947215
VGPVQLREQ	9	Unmodified	_VGPVQLREQ_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	513.290548	1024.56654	-1.3509	-0.00069339	4.9935	0.0025631	3.6426	0.0018697	513.2930020068255	65.24	0.60938	65.037	64.697	65.307	-0.20254	0.029791	0.00036875	NaN	62.107	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1453700			83635	18518	58309	58402							0.055242611917947215
VGPVTHEI	8	Unmodified	_VGPVTHEI_					0	0	0		ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR;ENST00000597211.1_1_19:7141597-7143049:-|nuORF	ENSG00000171105|ENST00000302850|INSR	ENSG00000171105|ENST00000302850|INSR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.246337890625	2	426.23471	850.454868	0.82698	0.00035249	-0.73496	-0.00031326	0.092027	3.9225E-05	426.23539804420443	86.959	0.51535	86.816	86.364	86.879	-0.14217					14	11	2	0	0	0	0.027866	1	10537	10537		50.025	14.406	1	99858			83636	8111	58310	58403	92642	92642					0.023658268346594014
VGQALRTH	8	Unmodified	_VGQALRTH_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	440.2616882324219	2	441.251226	880.487899	0.20959	9.2482E-05	-3.6158	-0.0015955	-3.4062	-0.001503	441.2492793444777	19.758	0.37868	19.758	19.6	19.979	0					11	7	2	0	0	0	0.027866	1	445	445		47.916	7.343	1	31148			83637	8772	58311	58404	92643	92643					0.04287453677363828
VGQAVTSMVVS	11	Unmodified	_VGQAVTSMVVS_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2816772460938	2	539.284074	1076.5536	-1.4631	-0.00078902	-1.4978	-0.00080772	-2.9609	-0.0015967	539.2826563414301	52.395	0.60978	52.126	51.944	52.553	-0.26903					53	15	4	0	0	0	0.67171	1	5443	5443		65.465	0	1	2911700	+		83638	25209	58312	58405	92644	92644					0.01838062017395714
VGQDDILLL	9	Unmodified	_VGQDDILLL_					0	0	0			REV__ENSG00000171443|ENST00000301073|ZNF524	REV__ENSG00000171443|ENST00000301073|ZNF524	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2635498046875	2	493.281857	984.549162	0.96261	0.00047484	-1.3748	-0.00067818	-0.41222	-0.00020334	493.28088039870494	70.927	0.95377	70.927	70.613	71.566	0					44	23	3	0	0	0	0.022832	1	8625	8625		71.877	15.156	1	1416900	+		83639	26562	58313	58406	92645	92645					0.056269208661547054
VGQLKGGPI	9	Unmodified	_VGQLKGGPI_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2948303222656	2	434.766178	867.517802	0.70117	0.00030484	-0.39273	-0.00017075	0.30844	0.0001341	434.76589586889065	59.032	0.61483	59.118	58.849	59.464	0.085682					34	16	3	0	0	0	0.024293	1	6699	6699		52.299	6.3472	1	428070	+		83640	28831	58314	58407	92646	92646					0.07874392622716186
VGQLKGGPI	9	Unmodified	_VGQLKGGPI_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	434.766178	867.517802	1.1176	0.00048589	-0.95154	-0.0004137	0.16605	7.2192E-05	434.7657591558551	59.136	0.54886	59.136	58.895	59.444	0	-0.0080554	3.7066E-05	NaN	52.299	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337200	+		83641	28831	58314	58407							0.07874392622716186
VGQLKLQP	8	Unmodified	_VGQLKLQP_					0	0	0			REV__ENST00000489421.1_1_1:41507155-41512268:-|nuORF	REV__ENST00000489421.1_1_1:41507155-41512268:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2452392578125	2	441.774003	881.533452	-0.2266	-0.00010011	1.4511	0.00064104	1.2245	0.00054093	441.7745217383464	32.002	0.51614	32.065	31.799	32.315	0.062893					16	12	2	0	0	0	0.027866	1	2168	2168		33.516	0	1	50842	+		83642	33667	58315	58408	92647	92647					0.08794679139748496
VGQTRGPGE	9	Unmodified	_VGQTRGPGE_					0	0	0			REV__ENST00000463472.1_1_22:50969089-50969740:-|nuORF	REV__ENST00000463472.1_1_22:50969089-50969740:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.760498046875	2	450.730323	899.446094	-0.57769	-0.00026038	-4.4356	-0.0019993	-5.0133	-0.0022596	450.7303084646077	39.14	0.28876	38.917	38.823	39.111	-0.22311					12	7	3	0	0	0	0.024319	1	3273	3273		31.53	5.9558	1	227400	+		83643	32937	58316	58409	92648	92648					-0.007651468018138985
VGRAKIAY	8	Unmodified	_VGRAKIAY_					0	0	0			REV__ENSG00000113262|ENST00000517717|GRM6	REV__ENSG00000113262|ENST00000517717|GRM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2663269042969	2	439.266345	876.518136	-0.49866	-0.00021905	0.74098	0.00032549	0.24231	0.00010644	439.26654024714026	43.322	3.0179	43.322	42.461	45.478	0					165	85	3	0	0	0	0.88442	1	4067	4067		52.299	2.2746	1	3361200	+		83644	22052	58317	58410	92649	92649					0.07493812342545425
VGRAKIAY	8	Unmodified	_VGRAKIAY_					0	0	0			REV__ENSG00000113262|ENST00000517717|GRM6	REV__ENSG00000113262|ENST00000517717|GRM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2663269042969	2	439.266345	876.518136	0.40112	0.0001762	-0.15652	-6.8755E-05	0.2446	0.00010744	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	0.65272	1	4009	4009		71.378	2.8932	1	3207400	+		83645	22052	58317	58410	92650	92650					0.07493812342545425
VGRCAGTH	8	Unmodified	_VGRCAGTH_					0	0	0			REV__chr8:122487466-122567577|179|10.42|0.51|4.35|-|0|TE_info:L1PA7,L1PA7_dup7028,L1,LINE,acceptor,-,122487167,122487466|None,LINC01151|5	REV__chr8:122487466-122567577|179|10.42|0.51|4.35|-|0|TE_info:L1PA7,L1PA7_dup7028,L1,LINE,acceptor,-,122487167,122487466|None,LINC01151|5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.1956481933594	2	400.695229	799.375906	-0.14974	-6.0001E-05	1.5062	0.00060355	1.3565	0.00054355	400.6958732757097	83.591	1.1125	83.452	83.124	84.237	-0.1386					38	25	2	0	0	0	0.027866	1	10124	10124		57.811	24.296	1	934910	+		83646	19470	58318	58411	92651	92651					-0.03180723671277974
VGRDNCKDTTC	11	Unmodified	_VGRDNCKDTTC_					0	0	0			REV__nc|ENSG00000104755|Q99965-2|ADAM2	REV__nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.5113220214844	3	404.509628	1210.50706	-0.57769	-0.00023368	3.5898	0.0014521	3.0121	0.0012184	404.51126135525834	31.999	1.1152	31.841	31.489	32.605	-0.15772					91	26	7	0	0	0	0.89117	1	2157	2157		52.167	1.3759	1	6431900	+		83647	21458	58319	58412	92652	92652					-0.0897774587620006
VGRIRKSP	8	Unmodified	_VGRIRKSP_					0	0	0		ENST00000514611.1_1_5:139625581-139680122:-|nuORF	ENST00000514611.1_1_5:139625581-139680122:-|nuORF	ENST00000514611.1_1_5:139625581-139680122:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7663269042969	2	456.790518	911.566484	-0.30509	-0.00013936	-3.5597	-0.001626	-3.8648	-0.0017654	456.78860760487504	23.108	0.50598	23.184	22.886	23.392	0.076239					21	11	3	0	0	0	0.027866	1	826	826		63.306	5.495	1	100420			83648	15884	58320	58413	92653	92653					0.10716305982452923
VGRKKGPN	8	Unmodified	_VGRKKGPN_					0	0	0		ENST00000297785.7_1_9:75524650-75527037:-|nuORF	ENST00000297785.7_1_9:75524650-75527037:-|nuORF	ENST00000297785.7_1_9:75524650-75527037:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.26165771484375	2	428.261594	854.508634	0.4968	0.00021276	-0.17636	-7.5526E-05	0.32044	0.00013723	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0574	1	11383	11383		23.042	0	1	86424000			83649	11865	58321	58414	92654	92654					0.0755604405703707
VGRKRGRL	8	Unmodified	_VGRKRGRL_					0	0	0		ENST00000394198.6_1_3:97686370-97686451:-|nuORF	ENST00000394198.6_1_3:97686370-97686451:-|nuORF	ENST00000394198.6_1_3:97686370-97686451:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.309326171875	2	471.30941	940.604266	3.9418	0.0018578	-4.2708	-0.0020129	-0.32902	-0.00015507	471.3074177863345	17.226	0.83264	17.226	17.06	17.892	0					41	16	4	0	0	0	1.0572	2	149	137;149		28.254	1.4582	1	1547100			83650	13482	58322	58415	92655;92656	92656					0.13158816967927578
VGRLGKFT	8	Unmodified	_VGRLGKFT_					0	0	0			REV__ENSG00000155858|ENST00000286307|LSM11	REV__ENSG00000155858|ENST00000286307|LSM11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2666931152344	2	439.266345	876.518136	-0.47805	-0.00020999	0.71342	0.00031338	0.23537	0.00010339	439.26654545883497	43.416	2.7354	43.277	42.521	45.256	-0.13929					191	77	3	0	0	0	1.0239	1	4030	4030		33.516	5.2613	1	3268000	+		83651	25034	58323	58416	92657	92657					0.07493812342568162
VGRPAMKP	8	Unmodified	_VGRPAMKP_					0	0	0		ENST00000555837.5_1_14:54863771-54875466:+|nuORF	ENST00000555837.5_1_14:54863771-54875466:+|nuORF	ENST00000555837.5_1_14:54863771-54875466:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.2616271972656	2	428.247098	854.479642	0.58768	0.00025167	0.80499	0.00034473	1.3927	0.00059641	428.246994574336	90.059	0.20895	89.92	89.749	89.958	-0.13824					5	4	2	0	0	0	0.027866	1	10982	10982		7.6903	0	1	94205			83652	16694	58324	58417	92658	92658					0.04658183436390573
VGRQKRRRF	9	Unmodified	_VGRQKRRRF_					0	0	0		ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	ENST00000479578.5_1_1:110198981-110200495:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.87567138671875	3	401.58289	1201.72684	0.81514	0.00032735	2.0848	0.00083724	2.9	0.0011646	401.583633728369	37.342	0.79802	37.149	36.927	37.725	-0.193					37	20	3	0	0	0	0.024541	1	3025	3025		19.997	4.0761	1	490020			83653	15174	58325	58418	92659	92659					0.13404653699330993
VGRRENLKIK	10	Unmodified	_VGRRENLKIK_					0	0	0		ENST00000563278.1_1_15:75661126-75661180:+|nuORF	ENST00000563278.1_1_15:75661126-75661180:+|nuORF	ENST00000563278.1_1_15:75661126-75661180:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9226989746094	3	404.922689	1211.74624	-0.22601	-9.1516E-05	-0.11784	-4.7715E-05	-0.34385	-0.00013923	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	1.1081	1	1408	1408		31.634	9.9485	1	42722000			83654	16862	58326	58419	92660	92660					0.14883565199579607
VGRSGALAV	9	Unmodified	_VGRSGALAV_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.26104736328125	2	415.248152	828.481751	1.3542	0.00056233	2.7033	0.0011225	4.0575	0.0016849	415.24946533955	20.371	0.14803	20.44	20.316	20.464	0.068901					4	2	2	0	0	0	0.023239	1	485	485		64.207	8.7031	1	29412			83655	6028	58327	58420	92661	92661					0.06064935445840547
VGRTPQAAI	9	Unmodified	_VGRTPQAAI_					0	0	0			REV__ENST00000556412.4_1_14:77917607-77919698:-|nuORF	REV__ENST00000556412.4_1_14:77917607-77919698:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7664489746094	2	456.766709	911.518865	-0.3124	-0.0001427	-0.36958	-0.00016881	-0.68198	-0.00031151	456.7666391219193	23.195	1.3674	23.134	22.663	24.03	-0.060862					88	31	3	0	0	0	0.18915	1	865	865		90.777	0	1	21323000	+		83656	35037	58328	58421	92662	92662					0.05956606991605895
VGRTPQAAI	9	Unmodified	_VGRTPQAAI_					0	0	0			REV__ENST00000556412.4_1_14:77917607-77919698:-|nuORF	REV__ENST00000556412.4_1_14:77917607-77919698:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.7663269042969	2	456.766709	911.518865	-0.30931	-0.00014128	-0.43086	-0.0001968	-0.74017	-0.00033808	456.76661331979113	23.06	1.5263	23.137	22.656	24.182	0.076241					120	34	5	0	0	0	0.33245	2	826	814;826		71.296	7.7619	1	22697000	+		83657	35037	58328	58421	92663;92664	92664					0.05956606991605895
VGRWGVMV	8	Unmodified	_VGRWGVMV_					0	0	0			REV__ENST00000506393.5_1_5:140047926-140048692:+|nuORF	REV__ENST00000506393.5_1_5:140047926-140048692:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	452.2450256347656	2	452.247098	902.479642	-0.21846	-9.8797E-05	-4.1164	-0.0018616	-4.3349	-0.0019604	452.24510360219574	20.372	0.39397	20.267	20.03	20.424	-0.10477					19	7	3	0	0	0	1.0472	1	531	531		29.842	6.7991	1	443050	+		83658	34027	58329	58422	92665	92665					0.024501834363945818
VGSADSRALP	10	Unmodified	_VGSADSRALP_					0	0	0		ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2724914550781	2	486.759081	971.503609	-0.49012	-0.00023857	1.6914	0.00082332	1.2013	0.00058475	486.7599700995892	21.125	0.44233	21.035	20.911	21.354	-0.090092					11	8	2	0	0	0	0.03519	1	627	627		96.19	32.884	1	23808			83659	4031	58330	58423	92666	92666					0.01671695403740614
VGSAHPPPEL	10	Unmodified	_VGSAHPPPEL_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3048400878906	2	502.263999	1002.51345	-0.24588	-0.0001235	3.114	0.001564	2.8681	0.0014405	502.26524608327514	24.868	0.43774	24.693	24.598	25.035	-0.17484					11	9	2	0	0	0	0.03519	1	1117	1117		34.173	3.8548	1	26101	+		83660	23777	58331	58424	92667	92667					0.012288834091350509
VGSALHPE	8	Unmodified	_VGSALHPE_					0	0	0		ENST00000530196.1_1_14:70714393-70714507:-|nuORF	ENST00000530196.1_1_14:70714393-70714507:-|nuORF	ENST00000530196.1_1_14:70714393-70714507:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.5110778808594	2	405.211235	808.407917	1.129	0.00045747	-0.50215	-0.00020348	0.62681	0.00025399	405.210800540822	32.389	0.89092	32.196	31.685	32.576	-0.19262					34	20	3	0	0	0	0.027866	1	2170	2170		26.796	8.4717	1	161070			83661	16225	58332	58425	92668	92668					-0.003950327164943701
VGSATTWSTA	10	Unmodified	_VGSATTWSTA_					0	0	0			REV__NOTCH1|p.C1311Afs*134|1|0.5|ENSG00000148400|chr9:136506610-136506610|A/-|frameshift_variant	REV__NOTCH1|p.C1311Afs*134|1|0.5|ENSG00000148400|chr9:136506610-136506610|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.75567626953125	2	490.737814	979.461075	-0.91108	-0.0004471	4.2404	0.0020809	3.3294	0.0016338	490.7402166048054	43.823	0.77831	43.678	43.353	44.131	-0.14471					42	21	3	0	0	0	0.03519	1	4087	4087		35.618	18.253	1	277490	+		83662	37290	58333	58426	92669	92669					-0.029476997244842096
VGSDAPKVH	9	Unmodified	_VGSDAPKVH_					0	0	0		ENSG00000175518|ENST00000380184|UBQLNL	ENSG00000175518|ENST00000380184|UBQLNL	ENSG00000175518|ENST00000380184|UBQLNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.75677490234375	2	455.243067	908.47158	0.41165	0.0001874	0.25876	0.0001178	0.67041	0.0003052	455.2432584417574	21.059	0.68517	21.131	20.86	21.546	0.071487					16	13	2	0	0	0	0.024354	1	600	600		23.042	0	1	41179			83663	8567	58334	58427	92670	92670					0.013683277206041566
VGSDKETVS	9	Unmodified	_VGSDKETVS_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	461.2607727050781	2	461.229822	920.445091	-0.084081	-3.878E-05	0.77241	0.00035626	0.68833	0.00031748	461.2304643796701	29.976	0.88046	29.826	29.087	29.967	-0.14952					30	20	3	0	0	0	0.023417	1	1751	1751		58.782	0	1	80237	+		83664	24852	58335	58428	92671	92671					-0.01831405961377186
VGSDREGR	8	Unmodified	_VGSDREGR_					0	0	0			REV__ENST00000473758.5_1_14:23536847-23537051:-|nuORF	REV__ENST00000473758.5_1_14:23536847-23537051:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.5216369628906	2	438.220123	874.425693	0.10284	4.5065E-05	4.0364	0.0017688	4.1393	0.0018139	438.2217871622944	32.243	0.3429	32.085	31.861	32.204	-0.15772					9	7	2	0	0	0	0.027866	1	2190	2190		13.775	0	1	20375	+		83665	33250	58336	58429	92672	92672					-0.016543174616231227
VGSFKETETI	10	Unmodified	_VGSFKETETI_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.7886962890625	2	555.787504	1109.56045	0.21265	0.00011819	3.2708	0.0018179	3.4835	0.0019361	555.7893337760734	105.68	0.40529	105.68	105.49	105.9	0.00014496					32	14	3	0	0	0	0.98527	1	13490	13490		47.96	0	1	144520	+		83666	23574	58337	58430	92673	92673					0.010056981696379808
VGSGLHLQV	9	Unmodified	_VGSGLHLQV_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.78924560546875	2	455.261259	908.507966	0.42565	0.00019378	0.052321	2.382E-05	0.47797	0.0002176	455.26104083815596	25.636	0.59089	25.716	25.459	26.049	0.08009					25	13	2	0	0	0	0.024487	1	1176	1176		11.511	0	1	134950			83667	1095	58338	58431	92674	92674					0.05005204617327763
VGSGLRSGV	9	Unmodified	_VGSGLRSGV_					0	0	0		ENST00000591380.1_1_19:37960150-37961132:+|nuORF	ENST00000591380.1_1_19:37960150-37961132:+|nuORF	ENST00000591380.1_1_19:37960150-37961132:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.23876953125	2	416.237784	830.461016	2.0395	0.00084891	-0.0048	-1.9979E-06	2.0347	0.00084691	416.237657627207	19.773	1.6125	19.839	19.587	21.2	0.066195					66	32	3	0	0	0	0.72875	1	410	410		44.117	0	1	419820			83668	17355	58339	58432	92675	92675					0.03900345066188038
VGSGMYSNI	9	Unmodified	_VGSGMYSNI_					0	0	0		ENST00000473371.1_1_13:39613176-39613868:+|nuORF	ENST00000473371.1_1_13:39613176-39613868:+|nuORF	ENST00000473371.1_1_13:39613176-39613868:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.2776794433594	2	464.21566	926.416767	0.24816	0.0001152	0.06303	2.926E-05	0.31119	0.00014446	464.2156751629319	49.346	0.86926	49.346	48.899	49.768	0					32	23	2	0	0	0	0.024025	1	5078	5078		52.937	10.541	1	110380			83669	15008	58340	58433	92676	92676					-0.04938427142326418
VGSHFLLP	8	Unmodified	_VGSHFLLP_					0	0	0		ENSG00000078579|ENST00000180166|FGF20	ENSG00000078579|ENST00000180166|FGF20	ENSG00000078579|ENST00000180166|FGF20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7590637207031	2	435.247621	868.480688	-0.2214	-9.6363E-05	0.07941	3.4563E-05	-0.14199	-6.18E-05	435.24759215452906	21.626	0.1843	21.535	21.452	21.636	-0.090094					5	3	2	0	0	0	0.027866	1	663	663		20.482	0	1	12091			83670	1637	58341	58434	92677	92677					0.04118721076940801
VGSHHQPQLSQ	11	Unmodified	_VGSHHQPQLSQ_					0	0	0		ENST00000359570.9_1_2:234116149-234116401:+|nuORF	ENST00000359570.9_1_2:234116149-234116401:+|nuORF	ENST00000359570.9_1_2:234116149-234116401:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	407.2452087402344	3	406.538904	1216.59488	0.27772	0.00011291	0.31143	0.00012661	0.58915	0.00023951	406.5388438068864	31.397	0.60877	31.409	31.214	31.823	0.011797					31	14	3	0	0	0	0.024774	1	2099	2099		7.6794	6.4475	1	277710			83671	12744	58342	58435	92678	92678					-0.004750408989139032
VGSHVLVE	8	Unmodified	_VGSHVLVE_					0	0	0		ENSG00000188996|ENST00000380907|HUS1B	ENSG00000188996|ENST00000380907|HUS1B	ENSG00000188996|ENST00000380907|HUS1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	419.2509460449219	2	420.23471	838.454868	-0.13344	-5.6075E-05	1.8815	0.00079065	1.748	0.00073458	420.2351958438477	25.73	0.60175	25.559	25.205	25.807	-0.17078					31	14	4	0	0	0	0.027866	1	1251	1251		26.796	0	1	218160			83672	9776	58343	58436	92679	92679					0.029178268346640834
VGSIVYVL	8	Unmodified	_VGSIVYVL_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	425.25628662109375	2	425.257654	848.500755	-1.1644	-0.00049519	-1.7308	-0.00073602	-2.8952	-0.0012312	425.25682355913864	35.588	1.0631	35.588	35.2	36.263	0					41	28	2	0	0	0	0.98906	1	2744	2744		39.021	5.5059	1	2609900			83673	3931	58344	58437	92680	92680					0.07044472016900727
VGSKRLVA	8	Unmodified	_VGSKRLVA_					0	0	0			REV__ENST00000357179.9_1_22:22330132-22337130:-|nuORF	REV__ENST00000357179.9_1_22:22330132-22337130:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.2323913574219	2	415.266345	828.518136	-0.52305	-0.0002172	0.7174	0.00029791	0.19436	8.071E-05	415.2665539047225	23.969	0.56744	23.921	23.741	24.308	-0.047148					16	12	2	0	0	0	0.027866	1	967	967		16.473	0	1	90903	+		83674	30822	58345	58438	92681	92681					0.09701812342564153
VGSLAGEAK	9	Unmodified	_VGSLAGEAK_					0	0	0		nc|ENSG00000148835|Q15542-2|TAF5;ENSG00000148835|ENST00000369839|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.7095642089844	2	416.232168	830.449782	-0.62387	-0.00025967	1.6817	0.0007	1.0579	0.00044032	416.232800637104	26.395	0.81505	26.231	25.98	26.795	-0.16331					27	21	2	0	0	0	0.023635	1	1342	1342		47.657	27.661	1	213730			83675	6053	58346	58439	92682	92682					0.027775229720305106
VGSLGAHIL	9	Unmodified	_VGSLGAHIL_					0	0	0			REV__nc|ENSG00000115129|Q53FA7-2|TP53I3	REV__nc|ENSG00000115129|Q53FA7-2|TP53I3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.7767333984375	2	433.758352	865.502152	-0.48079	-0.00020855	3.6866	0.0015991	3.2058	0.0013905	433.757882709791	29.535	0.16339	29.363	29.242	29.406	-0.17258					5	3	2	0	0	0	0.017513	1	1804	1804		101.21	10.435	1	14090	+		83676	22168	58347	58440	92683	92683					0.06402106105645089
VGSLGLKLL	9	Unmodified	_VGSLGLKLL_					0	0	0			REV__ENST00000542456.5_1_9:130647660-130647927:-|nuORF	REV__ENST00000542456.5_1_9:130647660-130647927:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2817077636719	2	450.299853	898.585153	0.28438	0.00012806	-3.7687	-0.001697	-3.4843	-0.001569	450.2986978250867	50.969	0.47122	50.969	50.707	51.178	0					27	12	3	0	0	0	0.024436	1	5395	5395		30.504	5.0535	1	479260	+		83677	34793	58348	58441	92684	92684					0.13180422833659122
VGSLKKRL	8	Unmodified	_VGSLKKRL_					0	0	0		ENST00000484662.1_1_1:78445045-78445108:+|nuORF	ENST00000484662.1_1_1:78445045-78445108:+|nuORF	ENST00000484662.1_1_1:78445045-78445108:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7901306152344	2	450.803094	899.591636	0.82625	0.00037248	-0.65375	-0.00029471	0.1725	7.7764E-05	450.8027363954905	19.567	0.78685	19.367	19.156	19.943	-0.2001					27	15	3	0	0	0	0.027866	1	497	497		63.306	0	1	189750			83678	15306	58349	58442	92685	92685					0.13782360785035053
VGSLKLDL	8	Unmodified	_VGSLKLDL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.24017333984375	2	422.760561	843.506569	-0.12523	-5.2943E-05	2.2794	0.00096362	2.1541	0.00091068	422.76082693582345	34.026	0.20416	34.022	33.908	34.112	-0.0045624					6	4	2	0	0	0	0.027866	1	2487	2487		31.955	1.4512	1	25858	+		83679	25017	58350	58443	92686	92686					0.07855570528568023
VGSLKLET	8	Unmodified	_VGSLKLET_					0	0	0		ENST00000266643.5_1_12:58152740-58152866:+|nuORF	ENST00000266643.5_1_12:58152740-58152866:+|nuORF	ENST00000266643.5_1_12:58152740-58152866:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2582702636719	2	423.750193	845.485833	-0.7069	-0.00029955	3.4381	0.0014569	2.7312	0.0011574	423.7514669177952	26.934	1.1095	27.015	26.21	27.319	0.081293					56	27	3	0	0	0	0.027866	1	1376	1376		29.15	3.6994	1	1506400			83680	11608	58351	58444	92687	92687					0.056909801489041456
VGSLKLET	8	Unmodified	_VGSLKLET_					0	0	0		ENST00000266643.5_1_12:58152740-58152866:+|nuORF	ENST00000266643.5_1_12:58152740-58152866:+|nuORF	ENST00000266643.5_1_12:58152740-58152866:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.258056640625	2	423.750193	845.485833	-0.41664	-0.00017655	0.95203	0.00040342	0.53539	0.00022687	423.75048010151806	27.332	0.47082	27.164	26.931	27.402	-0.16816					22	10	3	0	0	0	0.027866	1	1483	1483		45.952	10.334	1	189380			83681	11608	58351	58444	92688	92688					0.056909801489041456
VGSLKLQT	8	Unmodified	_VGSLKLQT_					0	0	0		ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	ENSG00000186260|ENST00000571589|MRTFB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2583923339844	2	423.258185	844.501818	-0.58061	-0.00024575	0.77057	0.00032615	0.18996	8.0402E-05	423.2584790819546	27.135	1.2846	27.135	26.867	28.151	0					79	33	4	0	0	0	0.71833	1	1460	1460		65.803	1.5959	1	3881700			83682	9533	58352	58445	92689	92689					0.07334686385797795
VGSLKVGLL	9	Unmodified	_VGSLKVGLL_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.279541015625	2	443.292028	884.569503	0.22672	0.0001005	1.5404	0.00068286	1.7672	0.00078336	443.29260911481447	54.617	0.14706	54.715	54.66	54.807	0.098015					6	3	2	0	0	0	0.024506	1	5909	5909		10.866	0	1	81098	+		83683	36998	58353	58446	92690	92690					0.12260136316615444
VGSLLKGR	8	Unmodified	_VGSLLKGR_					0	0	0		ENSG00000253251|ENST00000510585|SHLD3	ENSG00000253251|ENST00000510585|SHLD3	ENSG00000253251|ENST00000510585|SHLD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.2121276855469	2	415.266345	828.518136	-0.076036	-3.1575E-05	0.20717	8.6032E-05	0.13114	5.4457E-05	415.26636670020827	27.64	0.40885	27.627	27.391	27.799	-0.012983					16	10	2	0	0	0	0.027866	1	1550	1550		3.6843	0	1	82499			83684	10858	58354	58447	92691	92691					0.09701812342564153
VGSLLLEV	8	Unmodified	_VGSLLLEV_					0	0	0			REV__CSMD3|p.M3537V|1|0.1|ENSG00000164796|chr8:112237208-112237208|T/C|missense_variant	REV__CSMD3|p.M3537V|1|0.1|ENSG00000164796|chr8:112237208-112237208|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315368652344	2	415.255111	828.49567	0.10049	4.173E-05	3.714	0.0015423	3.8145	0.001584	415.2542244992029	21.131	0.28924	20.954	20.726	21.016	-0.17721					11	5	3	0	0	0	0.027866	1	635	635		8.2313	0	1	14359	+		83685	19618	58355	58448	92692	92692					0.07456168154271836
VGSLQARV	8	Unmodified	_VGSLQARV_					0	0	0		nc|ENSG00000136944|O60663-2|LMX1B;ENSG00000136944|ENST00000373474|LMX1B;nc|ENSG00000136944|O60663-3|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2482604980469	2	415.248152	828.481751	-0.74758	-0.00031043	0.6482	0.00026917	-0.099381	-4.1268E-05	415.2484510520065	35.786	1.2836	35.744	35.366	36.649	-0.042458					86	34	4	0	0	0	0.44658	1	2773	2773		90.777	3.0224	1	19276000			83686	5075	58356	58449	92693	92693					0.06064935445840547
VGSLQHAR	8	Unmodified	_VGSLQHAR_					0	0	0		ENSG00000124194|ENST00000342560|GDAP1L1;nc|ENSG00000124194|Q96MZ0-4|GDAP1L1	ENSG00000124194|ENST00000342560|GDAP1L1	ENSG00000124194|ENST00000342560|GDAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.78009033203125	2	434.243401	866.472249	0.27672	0.00012016	0.75105	0.00032614	1.0278	0.0004463	434.2435751684945	38.71	0.38718	38.485	38.282	38.669	-0.2257					12	9	2	0	0	0	0.027866	1	3183	3183		6.3127	0	1	85219			83687	4020	58357	58450	92694	92694					0.0336716716032015
VGSNRICR	8	Unmodified	_VGSNRICR_					0	0	0			REV__LHFPL2|p.P71S|1|0.5|ENSG00000145685|chr5:78510003-78510003|G/A|missense_variant	REV__LHFPL2|p.P71S|1|0.5|ENSG00000145685|chr5:78510003-78510003|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2539367675781	2	452.742711	903.470869	-0.25586	-0.00011584	0.96644	0.00043755	0.71058	0.00032171	452.74325024670907	20.787	0.37505	20.682	20.424	20.799	-0.10477					11	7	2	0	0	0	0.027866	1	542	542		38.806	12.113	1	57390	+		83688	36309	58358	58451	92695	92695					0.015272097999172729
VGSPGARSV	9	Unmodified	_VGSPGARSV_					0	0	0		ENST00000572652.5_1_17:78194749-78195028:+|nuORF	ENST00000572652.5_1_17:78194749-78195028:+|nuORF	ENST00000572652.5_1_17:78194749-78195028:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.2299499511719	2	415.229959	828.445365	-0.061699	-2.5619E-05	0.70475	0.00029263	0.64305	0.00026701	415.2301529633156	27.037	1.1519	27.024	26.456	27.608	-0.012983					69	29	4	0	0	0	0.23085	2	1420	1420;1433		84.916	5.4645	1	2792100			83689	17062	58359	58452	92696;92697	92696					0.024280585491396778
VGSPRPSFP	9	Unmodified	_VGSPRPSFP_					0	0	0		ENST00000591475.5_1_18:61064221-61089576:-|nuORF	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.7745666503906	2	472.253434	942.492316	0.97094	0.00045853	-0.96083	-0.00045376	0.010111	4.7748E-06	472.2527387960007	36.837	0.43931	36.627	36.405	36.844	-0.2092					18	10	2	0	0	0	0.024292	1	2933	2933		49.442	15.926	1	105850			83690	17356	58360	58453	92698	92698					0.018769181002767255
VGSQSRPAAW	10	Unmodified	_VGSQSRPAAW_					0	0	0		ENST00000533173.1_1_8:145676847-145677204:-|nuORF	ENST00000533173.1_1_8:145676847-145677204:-|nuORF	ENST00000533173.1_1_8:145676847-145677204:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7725219726562	2	529.772522	1057.53049	-0.94048	-0.00049824	0.60482	0.00032042	-0.33566	-0.00017782	529.7728441129415	28.621	1.0544	28.452	27.886	28.941	-0.16897					72	24	4	0	0	0	0.80817	1	1687	1687		60.118	5.3419	1	890200			83691	16311	58361	58454	92699	92699					0.0040280401492509554
VGSRTLSK	8	Unmodified	_VGSRTLSK_					0	0	0		ENST00000517557.5_1_8:97274268-97299434:+|nuORF;PTDSS1|p.T304Pfs*4|1|0.43|ENSG00000156471|chr8:96306459-96306459|A/-|frameshift_variant;ENSG00000156471|ENST00000517309|PTDSS1	ENST00000517557.5_1_8:97274268-97299434:+|nuORF	ENST00000517557.5_1_8:97274268-97299434:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	424.7661437988281	2	424.253434	846.492316	0.70062	0.00029724	-1.2038	-0.00051072	-0.5032	-0.00021348	424.25387797143287	71.409	0.54918	71.121	70.802	71.351	-0.28858					15	13	2	0	0	0	0.027866	1	8643	8643		15.642	0	1	56671			83692	6532	58362	58455	92700	92700					0.06292918100291445
VGSSGLKSL	9	Unmodified	_VGSSGLKSL_					0	0	0			REV__ENSG00000126246|ENST00000246532|IGFLR1	REV__ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2582702636719	2	424.247818	846.481082	-0.55843	-0.00023691	-0.36216	-0.00015365	-0.92059	-0.00039056	424.24750484337835	26.831	0.47741	26.912	26.586	27.064	0.081293					16	11	2	0	0	0	0.024541	1	1376	1376		17.365	0	1	114210	+		83693	22885	58363	58456	92701	92701					0.051700960061339174
VGSSVRLK	8	Unmodified	_VGSSVRLK_					0	0	0		ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	ENSG00000127418|ENST00000510644|FGFRL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	423.55487060546875	2	423.263802	844.513051	0.019486	8.2479E-06	0.087616	3.7085E-05	0.1071	4.5333E-05	423.2637430483775	24.204	0.51128	24.029	23.829	24.34	-0.17484					26	11	3	0	0	0	0.027866	1	1011	1011		18.324	0	1	456150			83694	4243	58364	58457	92702	92702					0.08457508479955322
VGSTEYDPEAR	11	Unmodified	_VGSTEYDPEAR_					0	0	0			REV__nc|ENSG00000101901|Q9NP73-4|ALG13	REV__nc|ENSG00000101901|Q9NP73-4|ALG13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.8852233886719	3	408.522808	1222.5466	1.9904	0.00081311	1.5047	0.0006147	3.4951	0.0014278	408.5234949645503	24.259	0.30296	24.078	23.938	24.241	-0.18089					10	6	2	0	0	0	0.024734	1	997	997		21.78	7.6944	1	29609	+		83695	21264	58365	58458	92703	92703					-0.05577579329474247
VGSTEYDPEAR	11	Unmodified	_VGSTEYDPEAR_					0	0	0			REV__nc|ENSG00000101901|Q9NP73-4|ALG13	REV__nc|ENSG00000101901|Q9NP73-4|ALG13	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	408.522808	1222.5466	0.16101	6.5777E-05	5.8074	0.0023725	5.9684	0.0024382	408.5255606222671	24.457	0.32964	24.242	24.089	24.418	-0.2151	0.081934	0.0025715	NaN	21.78	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41069	+		83696	21264	58365	58458							-0.05577579329474247
VGSTPLTAGLL	11	Unmodified	_VGSTPLTAGLL_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.7897338867188	2	514.802957	1027.59136	-0.88335	-0.00045475	-1.4237	-0.00073292	-2.307	-0.0011877	514.8019094301168	61.7	0.47039	61.772	61.59	62.061	0.071129					24	12	3	0	0	0	0.024752	1	7053	7053		19.104	0	1	1175900	+		83697	28014	58366	58459	92704	92704					0.0786689627452688
VGSVDVDVVY	10	Unmodified	_VGSVDVDVVY_					0	0	0		ENST00000368178.3_1_1:157716528-157737507:-|nuORF;nc|ENSG00000132704|Q96LA5-2|FCRL2;ENSG00000132704|ENST00000361516|FCRL2	ENST00000368178.3_1_1:157716528-157737507:-|nuORF;ENSG00000132704|ENST00000361516|FCRL2	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	526.2938842773438	2	526.268947	1050.52334	-0.69046	-0.00036337	4.1904	0.0022053	3.5	0.0018419	526.7706897469586	52.117	0.75795	51.998	51.682	52.44	-0.11876					71	19	5	0	0	0	0.03519	1	5413	5413		40.778	9.2484	1	803840			83698	12883;4646	58367	58460	92705	92705					0.00010026623863268469
VGSVGLEVIT	10	Unmodified	_VGSVGLEVIT_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6;DOCK6|p.S1249Lfs*27|1|0.12|ENSG00000130158|chr19:11217063-11217064|-/G|frameshift_variant	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2885437011719	2	487.281857	972.549162	-0.22373	-0.00010902	0.70049	0.00034134	0.47677	0.00023232	487.282535487013	58.163	1.1282	58.255	58.118	59.246	0.091217					49	30	3	0	0	0	0.03519	1	6542	6542		49.442	0	1	454180			83699	4388;663	58368	58461	92706	92706					0.061789208661252815
VGSVRQSQ	8	Unmodified	_VGSVRQSQ_					0	0	0			REV__ZBTB9|p.P237S|1|0.42|ENSG00000213588|chr6:33455809-33455809|C/T|missense_variant	REV__ZBTB9|p.P237S|1|0.42|ENSG00000213588|chr6:33455809-33455809|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	431.72930908203125	2	430.732866	859.451179	-0.7342	-0.00031624	-2.8112	-0.0012109	-3.5454	-0.0015271	430.7317425096817	39.011	0.52882	38.846	38.515	39.044	-0.16458					23	14	2	0	0	0	0.027866	1	3284	3284		12.207	0	1	231370	+		83700	37790	58369	58462	92707	92707					0.015831570608156653
VGSVSRSKT	9	Unmodified	_VGSVSRSKT_					0	0	0			REV__nc|ENSG00000129682|Q92913-2|FGF13	REV__nc|ENSG00000129682|Q92913-2|FGF13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.7510681152344	2	460.761623	919.508694	-0.1974	-9.0954E-05	3.4957	0.0016107	3.2983	0.0015197	460.7632416399553	34.351	0.16211	34.351	34.209	34.371	0					7	3	3	0	0	0	0.024506	1	2540	2540		6.3127	0	1	103030	+		83701	23060	58370	58463	92708	92708					0.045719992663862286
VGSWHEAQV	9	Unmodified	_VGSWHEAQV_					0	0	0			REV__ENST00000513886.1_1_16:61684-61825:+|nuORF	REV__ENST00000513886.1_1_16:61684-61825:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.3080139160156	2	506.745973	1011.47739	-0.40817	-0.00020684	2.4579	0.0012455	2.0497	0.0010387	506.7473111579644	41.468	0.4299	41.24	41.082	41.512	-0.2278					15	10	2	0	0	0	0.024323	1	3673	3673		35.618	13.039	1	105370	+		83702	34160	58371	58464	92709	92709					-0.02788573767725211
VGSWHEAQV	9	Unmodified	_VGSWHEAQV_					0	0	0			REV__ENST00000513886.1_1_16:61684-61825:+|nuORF	REV__ENST00000513886.1_1_16:61684-61825:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.745973	1011.47739	-0.6198	-0.00031408	1.0419	0.00052798	0.4221	0.0002139	506.74615457410096	41.465	0.46128	41.234	41.119	41.58	-0.2303	-0.13194	-0.0012904	NaN	35.618	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103810	+		83703	34160	58371	58464							-0.02788573767725211
VGVAVTVEV	9	Unmodified	_VGVAVTVEV_					0	0	0		ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.7576904296875	2	436.758018	871.501483	0.18585	8.1173E-05	0.0039389	1.7204E-06	0.18979	8.2893E-05	436.7578567498781	66.137	0.43362	66.167	65.89	66.324	0.030106					24	11	3	0	0	0	0.43973	1	7790	7790		63.306	0	1	1469900			83704	7632	58372	58465	92710	92710					0.0605926666595451
VGVAVTVEV	9	Unmodified	_VGVAVTVEV_					0	0	0		ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	436.758018	871.501483	-0.026195	-1.1441E-05	0.28403	0.00012405	0.25783	0.00011261	436.7579781445106	66.421	0.34678	66.139	65.904	66.251	-0.28148	-0.050446	8.6707E-06	NaN	63.306	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858820			83705	7632	58372	58465							0.0605926666595451
VGVAVTVEV	9	Unmodified	_VGVAVTVEV_					0	0	0		ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	436.758018	871.501483	-0.28074	-0.00012261	0.71519	0.00031237	0.43445	0.00018975	436.7581862301919	66.473	0.50116	66.225	65.94	66.441	-0.24839	0.035381	0.0003853	NaN	63.306	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609300			83706	7632	58372	58465							0.0605926666595451
VGVAVTVEV	9	Unmodified	_VGVAVTVEV_					0	0	0		ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	436.758018	871.501483	0.0082727	3.6132E-06	0.11629	5.0788E-05	0.12456	5.4402E-05	436.75802756880506	66.468	0.53157	66.223	65.891	66.422	-0.24517	0.033077	-0.00013785	NaN	63.306	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303900			83707	7632	58372	58465							0.0605926666595451
VGVEGCVH	8	Unmodified	_VGVEGCVH_					0	0	0			REV__nc|ENSG00000267235|O60384|ZNF861P	REV__nc|ENSG00000267235|O60384|ZNF861P	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.1959228515625	2	400.191988	798.369423	1.4544	0.00058205	3.8541	0.0015424	5.3085	0.0021244	400.19317366168235	80.238	1.1138	80.031	79.714	80.828	-0.20633					52	26	3	0	0	0	0.82104	1	9659	9659		57.453	7.4281	1	2185200	+		83708	37193	58373	58466	92711	92711					-0.03782661622642536
VGVGAQLVL	9	Unmodified	_VGVGAQLVL_					0	0	0		ENSG00000135404|ENST00000257857|CD63	ENSG00000135404|ENST00000257857|CD63	ENSG00000135404|ENST00000257857|CD63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7846984863281	2	428.268553	854.522553	-0.74761	-0.00032018	-2.6284	-0.0011256	-3.376	-0.0014458	428.26883306292996	26.072	0.50155	25.908	25.631	26.133	-0.16331					17	14	2	0	0	0	0.024443	1	1305	1305		35.201	2.3883	1	142990			83709	4890	58374	58467	92712	92712					0.0894727676545699
VGVGRKLP	8	Unmodified	_VGVGRKLP_					0	0	0		ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.2690124511719	2	413.268887	824.523222	-0.074845	-3.0931E-05	-0.095019	-3.9268E-05	-0.16986	-7.02E-05	413.2688655646756	28.455	1.0346	28.455	28.151	29.186	0					69	24	5	0	0	0	0.71717	1	1643	1643		65.897	5.6035	1	11996000			83710	13735	58375	58468	92713	92713					0.10394116205168302
VGVGRKLP	8	Unmodified	_VGVGRKLP_					0	0	0		ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.2690734863281	2	413.268887	824.523222	-0.041635	-1.7207E-05	-0.09002	-3.7203E-05	-0.13166	-5.4409E-05	413.26887745814287	28.4	1.3509	28.396	27.808	29.159	-0.0042019					82	32	4	0	0	0	0.71717	1	1667	1667		65.897	2.919	1	11141000			83711	13735	58375	58468	92714	92714					0.10394116205168302
VGVGRKLP	8	Unmodified	_VGVGRKLP_					0	0	0		ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.2690734863281	2	413.268887	824.523222	-0.038992	-1.6114E-05	-0.10212	-4.2201E-05	-0.14111	-5.8316E-05	413.2688300684122	28.189	1.2222	28.27	27.759	28.981	0.080812					72	29	4	0	0	0	0.71717	1	1596	1596		65.897	13.598	1	12564000			83712	13735	58375	58468	92715	92715					0.10394116205168302
VGVGRKLP	8	Unmodified	_VGVGRKLP_					0	0	0		ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.26959228515625	2	413.268887	824.523222	-0.65926	-0.00027245	0.44759	0.00018497	-0.21167	-8.7478E-05	413.2690179537799	28.36	1.4822	28.191	27.847	29.329	-0.16897					73	34	4	0	0	0	0.85409	1	1668	1668		54.765	7.9982	1	5715900			83713	13735	58375	58468	92716	92716					0.10394116205168302
VGVGRKLP	8	Unmodified	_VGVGRKLP_					0	0	0		ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	ENST00000406721.7_1_9:139633979-139636154:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2690124511719	2	413.268887	824.523222	-0.32611	-0.00013477	0.094917	3.9226E-05	-0.23119	-9.5544E-05	413.26888367366564	28.457	1.3519	28.305	27.689	29.041	-0.15195					69	32	4	0	0	0	0.71717	1	1631	1631		65.897	2.919	1	7049300			83714	13735	58375	58468	92717	92717					0.10394116205168302
VGVGRSVVG	9	Unmodified	_VGVGRSVVG_					0	0	0			REV__ENST00000412095.1_1_6:32812086-32812371:+|nuORF	REV__ENST00000412095.1_1_6:32812086-32812371:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.24835205078125	2	415.248152	828.481751	-0.23383	-9.7097E-05	0.052651	2.1863E-05	-0.18118	-7.5233E-05	415.24819602679423	35.905	1.3177	35.905	35.57	36.887	0					101	35	5	0	0	0	0.20304	1	2801	2801		88.643	3.2834	1	20766000	+		83715	31992	58376	58469	92718	92718					0.060649354458519156
VGVHARIA	8	Unmodified	_VGVHARIA_					0	0	0			REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	REV__nc|ENSG00000169660|Q8WVB3-2|HEXD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.858642578125	2	411.750862	821.487171	-0.64332	-0.00026489	4.4055	0.001814	3.7621	0.0015491	411.7504856698136	30.299	0.29399	30.121	29.909	30.203	-0.17818					10	6	2	0	0	0	0.027866	1	1908	1908		20.482	11.011	1	16288	+		83716	36915	58377	58470	92719	92719					0.06928659028301354
VGVKPLGR	8	Unmodified	_VGVKPLGR_					0	0	0			REV__ENST00000402119.8_1_19:16045502-16045571:-|nuORF	REV__ENST00000402119.8_1_19:16045502-16045571:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2691650390625	2	413.268887	824.523222	-0.32611	-0.00013477	0.094917	3.9226E-05	-0.23119	-9.5544E-05	413.26888367366564	28.457	1.3519	28.305	27.689	29.041	-0.15195					69	32	4	0	0	0	0.845	1	1655	1655		55.504	10.973	1	7049300	+		83717	31867	58378	58471	92720	92720					0.1039411620519104
VGVLAVNIYI	10	Unmodified	_VGVLAVNIYI_					0	0	0		ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7863159179688	2	530.823692	1059.63283	-0.19707	-0.00010461	3.45	0.0018313	3.2529	0.0017267	530.8243537503212	56.968	0.22327	56.766	56.596	56.819	-0.20209					7	5	2	0	0	0	0.03519	1	6195	6195		30.504	16.367	1	190470			83718	1560	58379	58472	92721	92721					0.10540077033851958
VGVLHGRA	8	Unmodified	_VGVLHGRA_					0	0	0			REV__nc|ENSG00000172508|A5YM72|CARNS1	REV__nc|ENSG00000172508|A5YM72|CARNS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	403.8630676269531	2	404.743037	807.471521	-0.54663	-0.00022125	0.56829	0.00023001	0.021655	8.7648E-06	404.7431936623861	28.056	0.67318	27.904	27.61	28.283	-0.15195					24	16	2	0	0	0	0.027866	1	1554	1554		14.664	5.1935	1	425540	+		83719	26680	58380	58473	92722	92722					0.060083725112690445
VGVPLPPAIA	10	Unmodified	_VGVPLPPAIA_					0	0	0			REV__ENST00000355105.7_1_1:46126895-46152108:-|nuORF	REV__ENST00000355105.7_1_1:46126895-46152108:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.7403564453125	2	467.292028	932.569503	-0.32269	-0.00015079	2.9595	0.001383	2.6368	0.0012322	467.29338759379743	37.898	0.75957	37.718	37.443	38.203	-0.17929					27	21	2	0	0	0	0.03519	1	3152	3152		19.36	0	1	132610	+		83720	30770	58381	58474	92723	92723					0.10052136316585347
VGVQPRLPLH	10	Unmodified	_VGVQPRLPLH_					0	0	0			REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF	REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.3355712890625	2	558.337833	1114.66111	0.22028	0.00012299	-4.408	-0.0024612	-4.1877	-0.0023382	558.335436203206	19.419	0.74025	19.258	19.034	19.774	-0.16079					25	14	2	0	0	0	1.0665	1	437	437		37.159	5.2042	1	1619300	+		83721	33696	58382	58475	92724	92724					0.1083681973379953
VGVTKDKV	8	Unmodified	_VGVTKDKV_					0	0	0			REV__ENSG00000182271|ENST00000328886|TMIGD1	REV__ENSG00000182271|ENST00000328886|TMIGD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.2582092285156	2	423.258185	844.501818	-0.21137	-8.9463E-05	0.39095	0.00016547	0.17958	7.6009E-05	423.25824823313735	27.226	1.0208	26.984	26.701	27.721	-0.24217					63	23	5	0	0	0	0.6536	1	1502	1502		71.296	7.0884	1	2125500	+		83722	27465	58383	58476	92725	92725					0.07334686385797795
VGVTKDKV	8	Unmodified	_VGVTKDKV_					0	0	0			REV__ENSG00000182271|ENST00000328886|TMIGD1	REV__ENSG00000182271|ENST00000328886|TMIGD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.25836181640625	2	423.258185	844.501818	-0.27339	-0.00011571	0.36242	0.0001534	0.08903	3.7683E-05	423.2582263060112	27.077	1.0641	26.908	26.506	27.57	-0.16816					71	24	5	0	0	0	0.42327	2	1457	1447;1457		94.006	9.0909	1	3024700	+		83723	27465	58383	58476	92726;92727	92727					0.07334686385797795
VGVVQSIK	8	Unmodified	_VGVVQSIK_					0	0	0		ENSG00000185519|ENST00000375662|FAM131C	ENSG00000185519|ENST00000375662|FAM131C	ENSG00000185519|ENST00000375662|FAM131C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	415.1986999511719	2	415.260728	828.506903	-0.029135	-1.2099E-05	0.17394	7.2229E-05	0.1448	6.013E-05	415.26070504755637	20.619	0.77917	20.451	20.197	20.976	-0.16774					43	15	5	0	0	0	0.027866	1	551	551		40.573	8.6178	1	1355500			83724	9448	58384	58477	92728	92728					0.08578990248429363
VGYKRQEAR	9	Unmodified	_VGYKRQEAR_					0	0	0			REV__ENSG00000135521|ENST00000367576|LTV1	REV__ENSG00000135521|ENST00000367576|LTV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.8290405273438	2	553.806897	1105.59924	-0.37822	-0.00020946	3.485	0.00193	3.1068	0.0017206	553.8086214075817	48.925	0.40548	48.743	48.595	49	-0.18206					19	10	2	0	0	0	0.024506	1	4900	4900		30.504	0	1	118900	+		83725	23553	58385	58478	92729	92729					0.05066468314657868
VGYRELLPD	9	Unmodified	_VGYRELLPD_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2882080078125	2	531.284931	1060.55531	-0.38572	-0.00020493	2.59	0.001376	2.2042	0.0011711	531.2843874418105	45.731	0.64808	45.775	45.512	46.16	0.04388					31	18	2	0	0	0	0.024381	1	4374	4374		29.15	2.4566	1	361710	+		83726	21802	58386	58479	92730	92730					0.027454390976799914
VGYRELLPD	9	Unmodified	_VGYRELLPD_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.284931	1060.55531	-0.66197	-0.0003517	3.4206	0.0018173	2.7586	0.0014656	531.2862222016474	45.904	0.3777	45.904	45.748	46.126	0	0.081056	0.0054065	NaN	29.15	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365800	+		83727	21802	58386	58479							0.027454390976799914
VGYRELLPD	9	Unmodified	_VGYRELLPD_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.284931	1060.55531	-0.085889	-4.5631E-05	-2.5379	-0.0013483	-2.6237	-0.001394	531.2824568040943	45.937	0.18207	45.84	45.741	45.923	-0.096649	0.017285	-0.00092478	NaN	29.15	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82750	+		83728	21802	58386	58479							0.027454390976799914
VHAAGGEQCEC	11	Unmodified	_VHAAGGEQCEC_					0	0	0			REV__nc|ENSG00000135622|O95754-2|SEMA4F	REV__nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2997436523438	2	552.215866	1102.41718	-0.81375	-0.00044936	-4.4613	-0.0024636	-5.275	-0.0029129	552.2134243777443	26.628	0.65219	26.605	26.405	27.057	-0.023088					23	15	2	0	0	0	0.024771	1	1346	1346		42.864	17.29	1	68880	+		83729	23561	58387	58480	92731	92731					-0.12993375484757053
VHACRAPK	8	Unmodified	_VHACRAPK_					0	0	0			REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|18|1|sense	REV__L1PA4_dup9334|chr12:12409221-12411354:-|1.138339360958882|0.0111968938891953|6.67|504.0|18|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.8537292480469	2	441.242347	880.47014	-0.2014	-8.8865E-05	-3.1978	-0.001411	-3.3992	-0.0014999	441.24077272556065	31.983	0.64435	31.746	31.529	32.173	-0.23667					24	14	2	0	0	0	0.027866	1	2148	2148		20.482	0	1	197730	+		83730	36243	58388	58481	92732	92732					0.025124151508634895
VHAHACMYLF	10	Unmodified	_VHAHACMYLF_					0	0	0		ENST00000299163.6_1_10:102308182-102308395:+|nuORF	ENST00000299163.6_1_10:102308182-102308395:+|nuORF	ENST00000299163.6_1_10:102308182-102308395:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	595.3445434570312	2	596.275529	1190.53651	-0.4457	-0.00026576	-3.5805	-0.002135	-4.0262	-0.0024007	596.2731825219759	71.744	1.4426	71.482	70.602	72.045	-0.26199					56	34	2	0	0	0	0.03519	1	8421	8421		19.36	13.047	1	167050			83731	11879	58389	58482	92733	92733					-0.05114137069426761
VHAPFLLSR	9	Unmodified	_VHAPFLLSR_					0	0	0		ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.3052368164062	2	520.306001	1038.59745	0.41563	0.00021626	-2.1341	-0.0011104	-1.7185	-0.00089414	520.304800388179	93.554	0.91519	93.432	92.971	93.886	-0.12215					61	20	4	0	0	0	0.59099	1	11519	11519		53.351	10.877	1	1813800			83732	17287	58390	58483	92734	92734					0.07969459296691639
VHAYIVSL	8	Unmodified	_VHAYIVSL_					0	0	0			REV__nc|ENSG00000196115|Q6NVV9-5|ADAM5	REV__nc|ENSG00000196115|Q6NVV9-5|ADAM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7795104980469	2	451.260728	900.506903	-0.096642	-4.3611E-05	0.3764	0.00016985	0.27976	0.00012624	451.26080205581053	47.754	0.71028	47.754	47.464	48.174	0					35	21	2	0	0	0	0.027866	1	4811	4811		20.482	0	1	698390	+		83733	37047	58391	58484	92735	92735					0.05266990248424008
VHCSFHTL	8	Unmodified	_VHCSFHTL_					0	0	0		ENST00000229328.9_1_12:120118126-120118270:+|nuORF	ENST00000229328.9_1_12:120118126-120118270:+|nuORF	ENST00000229328.9_1_12:120118126-120118270:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7666931152344	2	472.226362	942.438172	0.47274	0.00022324	-0.12046	-5.6887E-05	0.35228	0.00016635	472.2267114753297	71.043	0.42294	71.054	70.896	71.319	0.010735					14	10	2	0	0	0	0.027866	1	8553	8553		40.573	8.6178	1	102390			83734	11227	58392	58485	92736	92736					-0.03534997322935851
VHDDARPAK	9	Unmodified	_VHDDARPAK_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.7490234375	2	504.764697	1007.51484	-0.55434	-0.00027981	0.26586	0.00013419	-0.28848	-0.00014562	504.7648008605163	26.734	0.60481	26.711	26.486	27.091	-0.023088					34	14	3	0	0	0	0.024261	1	1421	1421		54.776	0	1	505350	+		83735	19108	58394	58486	92737	92737					0.01138517497884095
VHDDARPAK	9	Unmodified	_VHDDARPAK_					0	0	0			REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	REV__ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.7492370605469	2	504.764697	1007.51484	-0.3271	-0.00016511	0.3955	0.00019964	0.068407	3.4529E-05	504.7646688104806	26.411	0.63335	26.493	26.249	26.883	0.081291					34	14	4	0	0	0	0.024021	1	1330	1330		68.787	14.011	1	442090	+		83736	19108	58394	58486	92738	92738					0.01138517497884095
VHDELEVLS	9	Unmodified	_VHDELEVLS_					0	0	0			REV__ENST00000464757.1_1_1:245005324-245005529:+|nuORF	REV__ENST00000464757.1_1_1:245005324-245005529:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7666015625	2	520.766571	1039.51859	-0.46416	-0.00024172	-0.34831	-0.00018139	-0.81247	-0.00042311	520.7664167659216	47.498	3.4956	47.402	46.86	50.355	-0.096649					231	93	6	0	0	0	0.13494	1	4684	4684		102.77	5.3007	1	69514000	+		83737	32988	58395	58487	92739	92739					0.0004114248110909102
VHDEYILEWYK	11	Unmodified	_VHDEYILEWYK_					0	0	0			REV__ENST00000464192.1_1_3:107047282-107047681:-|nuORF	REV__ENST00000464192.1_1_3:107047282-107047681:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.82684326171875	3	498.913637	1493.71908	-0.57369	-0.00028622	-4.229	-0.0021099	-4.8027	-0.0023961	498.91158991223205	22.15	0.67659	21.948	21.469	22.146	-0.20198					19	13	2	0	0	0	0.024746	1	717	717		33.039	11.259	1	31825	+		83738	32963	58396	58488	92740	92740					-0.008030079221043707
VHDSRYGRY	9	Unmodified	_VHDSRYGRY_					0	0	0		ENSG00000185105|ENST00000409745|MYADML2	ENSG00000185105|ENST00000409745|MYADML2	ENSG00000185105|ENST00000409745|MYADML2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7822265625	2	576.780879	1151.5472	-0.73593	-0.00042447	3.1926	0.0018415	2.4567	0.001417	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	0.59099	1	7570	7570		53.351	11.925	1	1832600			83739	9409	58397	58489	92741	92741					-0.02250695099087352
VHEFLLALE	9	Unmodified	_VHEFLLALE_					0	0	0			REV__ENSG00000117013|ENST00000347132|KCNQ4	REV__ENSG00000117013|ENST00000347132|KCNQ4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7667846679688	2	535.797675	1069.5808	-0.014637	-7.8426E-06	-0.55471	-0.00029721	-0.56935	-0.00030506	536.2979659564393	36.992	0.43404	36.799	36.455	36.889	-0.193					14	10	2	0	0	0	0.024487	1	2951	2951		24.203	5.0992	1	140970	+		83740	22319	58398	58490	92742	92742					0.04878913620086678
VHEKIKKV	8	Unmodified	_VHEKIKKV_					0	0	0			REV__UBD|p.Y27C|1|0.3|ENSG00000213886|chr6:29556298-29556298|T/C|missense_variant	REV__UBD|p.Y27C|1|0.3|ENSG00000213886|chr6:29556298-29556298|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2713928222656	2	490.816202	979.617851	-0.035446	-1.7398E-05	-1.081	-0.00053057	-1.1164	-0.00054797	490.81567287705684	63.377	0.36495	63.125	62.935	63.3	-0.25141					13	9	2	0	0	0	0.027866	1	7387	7387		17.365	0	1	106490	+		83741	28753	58399	58491	92743	92743					0.1272262995652227
VHELHGNP	8	Unmodified	_VHELHGNP_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	451.2533264160156	2	451.727584	901.440614	-0.33839	-0.00015286	3.2191	0.0014542	2.8807	0.0013013	451.72905957218273	27.954	0.68353	27.954	27.508	28.191	0					24	17	2	0	0	0	0.027866	1	1599	1599		40.573	8.6178	1	48666	+		83742	24537	58400	58492	92744	92744					-0.014048255936245369
VHELHGNP	8	Unmodified	_VHELHGNP_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2532043457031	2	451.727584	901.440614	-0.46575	-0.00021039	2.8924	0.0013066	2.4266	0.0010962	451.72867656523493	27.749	0.46481	27.831	27.571	28.036	0.081293					15	11	2	0	0	0	0.027866	1	1507	1507		24.203	7.7296	1	32806	+		83743	24537	58400	58492	92745	92745					-0.014048255936245369
VHERGFAL	8	Unmodified	_VHERGFAL_					0	0	0			REV__USP13-PEX5L|1|fusion	REV__USP13-PEX5L|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.79827880859375	2	464.753601	927.49265	0.21627	0.00010051	3.8201	0.0017754	4.0364	0.0018759	464.75504944264634	41.366	0.9284	41.243	40.833	41.762	-0.12317					57	25	5	0	0	0	0.027866	1	3777	3777		40.573	5.3719	1	2771000	+		83744	37764	58401	58493	92746	92746					0.026003378201380656
VHERGFAL	8	Unmodified	_VHERGFAL_					0	0	0			REV__USP13-PEX5L|1|fusion	REV__USP13-PEX5L|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.7983703613281	2	464.753601	927.49265	0.70055	0.00032558	2.6992	0.0012545	3.3998	0.0015801	464.75481744430516	41.377	0.74366	41.4	41.111	41.854	0.023006					31	20	2	0	0	0	0.027866	1	3738	3738		31.955	3.7006	1	2188200	+		83745	37764	58401	58493	92747	92747					0.026003378201380656
VHETHDSTD	9	Unmodified	_VHETHDSTD_					0	0	0			REV__ENST00000567216.5_1_16:587614-588244:+|nuORF	REV__ENST00000567216.5_1_16:587614-588244:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2869873046875	2	520.71761	1039.42067	-1.2949	-0.00067429	-0.33248	-0.00017313	-1.6274	-0.00084742	521.2179423133216	36.023	0.20327	35.98	35.864	36.067	-0.042458					9	5	2	0	0	0	0.024354	1	2799	2799		38.806	15.764	1	57575	+		83746	35316	58402	58494	92748	92748					-0.09746666114892832
VHFHKIGL	8	Unmodified	_VHFHKIGL_					0	0	0			REV__ENST00000518942.1_1_8:52812321-52859098:+|nuORF	REV__ENST00000518942.1_1_8:52812321-52859098:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2881164550781	2	475.782162	949.549771	0.21266	0.00010118	0.2393	0.00011385	0.45196	0.00021503	475.7809298596252	102.09	1.1661	101.96	101.07	102.23	-0.12666					38	28	2	0	0	0	1.0472	1	12678	12678		29.842	1.5873	1	126380	+		83747	34249	58403	58495	92749	92749					0.07297805096516186
VHFILSPG	8	Unmodified	_VHFILSPG_					0	0	0			REV__ENST00000314103.5_1_21:37781100-37781745:+|nuORF	REV__ENST00000314103.5_1_21:37781100-37781745:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2409362792969	2	435.247621	868.480688	-0.026852	-1.1687E-05	-3.8669	-0.001683	-3.8937	-0.0016947	435.24560859753484	32.009	0.59106	32.072	31.799	32.39	0.062885					19	14	2	0	0	0	0.027866	1	2144	2144		10.185	0	1	164490	+		83748	30239	58404	58496	92750	92750					0.0411872107695217
VHFLLPPL	8	Unmodified	_VHFLLPPL_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.30438232421875	2	468.289288	934.564024	-0.29895	-0.00013999	1.1162	0.00052272	0.81729	0.00038273	468.2900555032229	62.211	0.28069	61.984	61.839	62.119	-0.22663					10	7	2	0	0	0	0.027866	1	7216	7216		24.504	0	1	332440			83749	8686	58405	58497	92751	92751					0.09412457524797446
VHFLVRCG	8	Unmodified	_VHFLVRCG_					0	0	0			REV__nc|ENSG00000168067|Q12851-2|MAP4K2	REV__nc|ENSG00000168067|Q12851-2|MAP4K2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	466.2369689941406	2	465.752547	929.490542	-0.29828	-0.00013892	-0.93707	-0.00043644	-1.2353	-0.00057537	465.75204479427134	27.29	1.4137	27.277	26.994	28.407	-0.012983					45	36	2	0	0	0	0.027866	1	1615	1615		28.254	0	1	138250	+		83750	26227	58406	58498	92752	92752					0.022975858106747182
VHFVSNDVL	9	Unmodified	_VHFVSNDVL_					0	0	0			REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant	REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.2944946289062	2	515.271824	1028.5291	-1.0952	-0.00056433	0.34027	0.00017533	-0.75494	-0.000389	515.2719252014815	54.041	0.48908	53.905	53.63	54.119	-0.13617					21	15	2	0	0	0	0.024523	1	5669	5669		21.96	0	1	256730	+		83751	22146	58407	58499	92753	92753					0.01597169926208153
VHFVVLTQL	9	Unmodified	_VHFVVLTQL_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.313232421875	2	528.316035	1054.61752	0.93363	0.00049325	-3.9645	-0.0020945	-3.0309	-0.0016013	528.314039597707	97.298	1.0642	97.298	96.793	97.857	-3.0518E-05					54	23	3	0	0	0	0.92825	1	12361	12361		30.504	1.3541	1	285260			83752	3953	58408	58500	92754	92754					0.09239210236660256
VHFVYQCNWF	10	Unmodified	_VHFVYQCNWF_					0	0	0			REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|21|1|anti-sense	REV__ORSL-2a_dup209|chr10:46413845-46414221:+|1.838289740722608|0.0969854977839809|4.24|512.0|21|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.23529052734375	3	448.206098	1341.59646	0.030043	1.3466E-05	2.2509	0.0010089	2.2809	0.0010223	448.5419327502881	37.708	0.23021	37.524	37.359	37.589	-0.18374					7	5	2	0	0	0	0.03519	1	3055	3055		16.007	8.9881	1	84643	+		83753	37338	58409	58501	92755	92755					-0.06067123134516805
VHGCRLCRE	9	Unmodified	_VHGCRLCRE_					0	0	0			REV__ENST00000486107.5_1_3:49947550-49967319:-|nuORF	REV__ENST00000486107.5_1_3:49947550-49967319:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2957153320312	2	536.760578	1071.5066	-1.4951	-0.00080249	-2.0399	-0.0010949	-3.5349	-0.0018974	536.7588185789917	37.807	0.64249	37.84	37.525	38.167	0.032269					36	17	3	0	0	0	0.024457	1	3084	3084		37.159	8.0096	1	398300	+		83754	33578	58410	58502	92756	92756					-0.02629076014727616
VHGGLVLR	8	Unmodified	_VHGGLVLR_					0	0	0			REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	425.23822021484375	2	425.766512	849.518471	0.658	0.00028015	-0.61169	-0.00026044	0.046307	1.9716E-05	425.7661463497392	21.933	0.5723	21.745	21.483	22.055	-0.18841					28	11	3	0	0	0	0.027866	1	738	738		14.664	0	1	240830	+		83755	35380	58411	58503	92757	92757					0.08769232062411447
VHGKDIDLY	9	Unmodified	_VHGKDIDLY_					0	0	0			REV__nc|ENSG00000079785|Q92499-3|DDX1	REV__nc|ENSG00000079785|Q92499-3|DDX1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2776489257812	2	530.277106	1058.53966	-0.441	-0.00023385	0.48154	0.00025535	0.040531	2.1493E-05	530.2771948294628	57.917	0.94466	57.727	57.148	58.092	-0.19017					72	24	5	0	0	0	0.70186	1	6334	6334		45.952	0	1	20667000	+		83756	20642	58412	58504	92758	92758					0.012731525806202626
VHGRHQPVQ	9	Unmodified	_VHGRHQPVQ_					0	0	0			REV__ENSG00000224420|ENST00000420022|ADM5	REV__ENSG00000224420|ENST00000420022|ADM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3054809570312	2	529.286131	1056.55771	-0.6222	-0.00032932	2.5415	0.0013452	1.9193	0.0010159	529.7887049303016	64.761	0.63057	64.527	64.137	64.768	-0.2345					18	15	2	0	0	0	0.024487	1	7315	7315		17.365	0	1	243290	+		83757	28859	58413	58505	92759	92759					0.03169332345987641
VHGSAPWS	8	Unmodified	_VHGSAPWS_					0	0	0			REV__nc|ENSG00000141956|P57071|PRDM15	REV__nc|ENSG00000141956|P57071|PRDM15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.70404052734375	2	420.703577	839.392602	-0.062575	-2.6326E-05	0.28349	0.00011926	0.22091	9.2939E-05	420.7035690313256	33.738	0.90265	33.508	33.234	34.137	-0.22926					57	22	4	0	0	0	0.95417	1	2424	2424		44.531	2.0566	1	3549800	+		83758	36727	58414	58506	92760	92760					-0.03351899513677381
VHGWKYSR	8	Unmodified	_VHGWKYSR_					0	0	0		ENST00000314138.10_1_11:8710898-8710934:+|nuORF	ENST00000314138.10_1_11:8710898-8710934:+|nuORF	ENST00000314138.10_1_11:8710898-8710934:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.8082275390625	2	516.772326	1031.5301	-1.011	-0.00052246	4.1436	0.0021413	3.1326	0.0016188	516.770947140932	93.823	0.32851	93.829	93.562	93.89	0.0059814					12	7	3	0	0	0	0.027866	1	11818	11818		38.806	14.603	1	58274			83759	12115	58415	58507	92761	92761					0.015594290857279702
VHHLKNII	8	Unmodified	_VHHLKNII_					0	0	0			REV__ENSG00000154122|ENST00000284268|ANKH	REV__ENSG00000154122|ENST00000284268|ANKH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.7908020019531	2	487.300719	972.586885	0.63574	0.0003098	3.819	0.001861	4.4548	0.0021708	487.30136843474804	83.958	0.1735	83.789	83.66	83.834	-0.16915					5	3	2	0	0	0	0.027866	1	10143	10143		14.664	0	1	17053	+		83760	24935	58416	58508	92762	92762					0.0994947664225947
VHHLLLLFASP	11	Unmodified	_VHHLLLLFASP_					0	0	0			REV__ENST00000515653.1_1_5:140019075-140022107:+|nuORF	REV__ENST00000515653.1_1_5:140019075-140022107:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.9033508300781	3	416.248403	1245.72338	-0.091314	-3.8009E-05	3.7996	0.0015816	3.7083	0.0015436	416.24961316714035	32.13	0.60391	31.894	31.654	32.258	-0.23667					18	13	2	0	0	0	0.024736	1	2165	2165		25.126	3.4402	1	111900	+		83761	34202	58417	58509	92763	92763					0.11034546082123597
VHHLVHIRY	9	Unmodified	_VHHLVHIRY_					0	0	0			REV__ENST00000493829.5_1_2:85843459-85872221:+|nuORF	REV__ENST00000493829.5_1_2:85843459-85872221:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.7208251953125	2	587.335624	1172.6567	-1.2052	-0.00070789	-1.1669	-0.00068534	-2.3721	-0.0013932	587.3353209420148	33.023	0.23817	32.857	32.8	33.038	-0.16565					6	5	2	0	0	0	0.024357	1	2308	2308		35.201	14.254	1	50258	+		83762	33773	58418	58510	92764	92764					0.07727355310885287
VHHLYPLLK	9	Unmodified	_VHHLYPLLK_					0	0	0			REV__ENST00000367455.8_1_1:192985286-192985367:-|nuORF	REV__ENST00000367455.8_1_1:192985286-192985367:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2796020507812	2	560.337301	1118.66005	0.11657	6.5318E-05	3.4708	0.0019448	3.5873	0.0020101	560.8389646692797	85.884	0.34203	85.746	85.577	85.919	-0.13743					12	7	3	0	0	0	0.024517	1	10419	10419		26.796	8.4717	1	37780	+		83763	31021	58419	58511	92765	92765					0.10546605364879724
VHHRSVLV	8	Unmodified	_VHHRSVLV_					0	0	0			REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.7806701660156	2	473.782693	945.550834	1.6966	0.00080383	-1.9811	-0.00093863	-0.28452	-0.0001348	473.78163175453676	23.641	0.53668	23.45	23.124	23.66	-0.19117					40	12	4	0	0	0	0.75307	1	955	955		62.978	11.643	1	1562200	+		83764	37036	58420	58512	92766	92766					0.07588019465424622
VHHTNAVLL	9	Unmodified	_VHHTNAVLL_					0	0	0			REV__nc|ENSG00000112303|O95498-6|VNN2	REV__nc|ENSG00000112303|O95498-6|VNN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.2668151855469	2	502.287808	1002.56106	-1.0442	-0.00052451	2.0151	0.0010121	0.97081	0.00048762	502.28927714552265	82.033	0.86083	81.893	81.486	82.347	-0.14014					29	19	2	0	0	0	0.024405	1	9849	9849		44.117	12.162	1	152900	+		83765	21991	58421	58513	92767	92767					0.05988582400004816
VHILKRSF	8	Unmodified	_VHILKRSF_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7430114746094	2	500.308544	998.602535	0.12601	6.3044E-05	-1.7267	-0.0008639	-1.6007	-0.00080085	500.3074855161152	56.302	0.85062	56.086	55.845	56.696	-0.21607					43	21	3	0	0	0	0.027866	1	6184	6184		83.287	28.523	1	2018000			83766	774	58422	58514	92768	92768					0.10317763159321203
VHILTSVSSL	10	Unmodified	_VHILTSVSSL_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2	nc|ENSG00000106462|Q15910|EZH2	nc|ENSG00000106462|Q15910|EZH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2738037109375	2	528.308406	1054.60226	0.45182	0.0002387	-1.1489	-0.00060698	-0.69709	-0.00036828	528.8106491095024	91.727	0.17369	91.736	91.658	91.832	0.0094147					6	3	2	0	0	0	0.03519	1	11552	11552		42.396	15.703	1	21594			83767	2791	58423	58515	92769	92769					0.07714298648807016
VHIRRTTDKDA	11	Unmodified	_VHIRRTTDKDA_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	438.75042724609375	3	437.909109	1310.7055	-0.29432	-0.00012889	3.178	0.0013917	2.8837	0.0012628	437.91045245168704	45.19	0.62263	44.938	44.67	45.292	-0.25252					37	16	3	0	0	0	0.024816	1	4229	4229		21.78	0	1	869140	+		83768	23428	58424	58516	92770	92770					0.06257179089311649
VHIVLDSVRR	10	Unmodified	_VHIVLDSVRR_					0	0	0		ENSG00000154760|ENST00000285013|SLFN13;nc|ENSG00000154760|Q68D06-2|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	ENSG00000154760|ENST00000285013|SLFN13	MSMS	OPSCC_39_ClassI_Rep-1	1	597.3565673828125	2	597.359296	1192.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.935	1	90.935	90.435	91.435	0								0	0	0	0.73952	1	11507	11507		37.159	6.6555	1				83769	6433	58425	58517	92771	92771					0.11539589791209437
VHIVPFGKI	9	Unmodified	_VHIVPFGKI_					0	0	0			REV__ENST00000389063.2_1_5:112356311-112356485:+|nuORF	REV__ENST00000389063.2_1_5:112356311-112356485:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3111877441406	2	505.313295	1008.61204	-0.63879	-0.00032279	-3.8008	-0.0019206	-4.4396	-0.0022434	505.3113234396928	48.502	1.6091	48.35	48.023	49.632	-0.15276					92	44	4	0	0	0	0.72268	1	4913	4913		44.531	0.90502	1	6450700	+		83770	31566	58426	58518	92772	92772					0.10807531444845608
VHKDPPLVK	9	Unmodified	_VHKDPPLVK_					0	0	0		ENST00000356384.4_1_9:137331265-137331760:+|nuORF	ENST00000356384.4_1_9:137331265-137331760:+|nuORF	ENST00000356384.4_1_9:137331265-137331760:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.784423828125	2	516.813659	1031.61277	-0.01784	-9.2198E-06	-1.8341	-0.0009479	-1.852	-0.00095712	516.812689388529	93.903	0.52066	93.755	93.479	94	-0.14771					20	11	2	0	0	0	0.024523	1	11570	11570		29.15	0	1	61258			83771	12666	58427	58519	92773	92773					0.09822326093899392
VHKEYAESEQE	11	Unmodified	_VHKEYAESEQE_					0	0	0			REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.2063293457031	3	450.205368	1347.59427	0.82021	0.00036926	1.8239	0.00082115	2.6441	0.0011904	450.2062862239645	22.791	1.1455	22.589	22.285	23.431	-0.20199					72	25	5	0	0	0	1.0327	1	831	831		29.551	1.167	1	4455900	+		83772	22116	58428	58520	92774	92774					-0.06561925129267365
VHKGMFATN	9	Unmodified	_VHKGMFATN_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.77984619140625	2	502.752744	1003.49094	-0.8789	-0.00044187	0.67625	0.00033999	-0.20265	-0.00010188	502.7527810254785	53.572	0.36038	53.425	53.132	53.493	-0.14723					11	9	2	0	0	0	0.024374	1	5781	5781		40.778	0	1	63766			83773	3776	58429	58521	92775	92775					-0.010670392601355161
VHKGNESL	8	Unmodified	_VHKGNESL_					0	0	0			REV__ENSG00000110723|ENST00000265843|EXPH5	REV__ENSG00000110723|ENST00000265843|EXPH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2355041503906	2	442.235242	882.45593	-0.187	-8.2699E-05	0.095085	4.205E-05	-0.091918	-4.0649E-05	442.2352870999212	33.992	1.0781	33.992	33.59	34.668	0					75	27	4	0	0	0	0.38451	1	2495	2495		99.375	8.5983	1	10490000	+		83774	21871	58430	58522	92776	92776					0.010000412035765294
VHKGNESL	8	Unmodified	_VHKGNESL_					0	0	0			REV__ENSG00000110723|ENST00000265843|EXPH5	REV__ENSG00000110723|ENST00000265843|EXPH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2355041503906	2	442.235242	882.45593	-0.03966	-1.7539E-05	-0.058251	-2.5761E-05	-0.09791	-4.3299E-05	442.2352293682261	33.816	1.2333	33.811	33.377	34.61	-0.0045624					79	31	4	0	0	0	0.42327	2	2455	2445;2455		94.006	8.3619	1	10562000	+		83775	21871	58430	58522	92777;92778	92778					0.010000412035765294
VHKGNESL	8	Unmodified	_VHKGNESL_					0	0	0			REV__ENSG00000110723|ENST00000265843|EXPH5	REV__ENSG00000110723|ENST00000265843|EXPH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.235595703125	2	442.235242	882.45593	-0.0023553	-1.0416E-06	0.013759	6.0846E-06	0.011403	5.043E-06	442.23524894786095	33.737	1.2094	33.793	33.315	34.524	0.056572					86	30	5	0	0	0	0.46709	2	2404	2396;2404		88.643	20.158	1	9637300	+		83776	21871	58430	58522	92779;92780	92780					0.010000412035765294
VHKIEFEH	8	Unmodified	_VHKIEFEH_					0	0	0		ENST00000491175.1_1_3:138340270-138348004:+|nuORF;ENST00000470889.5_1_3:138329799-138348004:+|nuORF;nc|ENSG00000158234|Q9NVQ4|FAIM;ENSG00000158234|ENST00000360570|FAIM;nc|ENSG00000158234|Q9NVQ4-2|FAIM	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	ENST00000491175.1_1_3:138340270-138348004:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3146362304688	2	519.771991	1037.52943	-1.2076	-0.00062766	-2.9401	-0.0015282	-4.1477	-0.0021558	519.7703466375854	35.629	0.78732	35.607	35.196	35.984	-0.021763					47	20	3	0	0	0	0.027866	1	2753	2753		52.299	0	1	1781500			83777	6655	58431	58523	92781	92781					0.012165896460601289
VHKNLIPQGIV	11	Unmodified	_VHKNLIPQGIV_					0	0	0		ENST00000454201.5_1_3:50363554-50364527:-|nuORF;ENST00000421918.1_1_3:50363554-50364574:-|nuORF;ENSG00000114383|ENST00000232496|TUSC2	ENST00000454201.5_1_3:50363554-50364527:-|nuORF	ENST00000454201.5_1_3:50363554-50364527:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.5845642089844	3	406.583674	1216.72919	0.36669	0.00014909	0.40293	0.00016383	0.76962	0.00031291	406.5837615324145	110.7	0.44067	110.58	110.51	110.95	-0.12525					30	15	2	0	0	0	1.0684	1	13604	13604		20.03	2.8637	1	830120			83778	3358	58432	58524	92782	92782					0.12949644593800258
VHKQIEVLV	9	Unmodified	_VHKQIEVLV_					0	0	0			REV__ENSG00000132554|ENST00000360863|RGS22	REV__ENSG00000132554|ENST00000360863|RGS22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.269287109375	2	532.826766	1063.63898	0.10159	5.4132E-05	0.13327	7.1012E-05	0.23487	0.00012514	532.8269807759503	50.273	0.45694	50.092	49.788	50.245	-0.18071					16	11	2	0	0	0	0.024506	1	5082	5082		38.806	25.847	1	103070	+		83779	23291	58433	58525	92783	92783					0.1097059526537123
VHLEYTGGVNQ	11	Unmodified	_VHLEYTGGVNQ_					0	0	0			REV__ENSG00000120337|ENST00000404377|TNFSF18	REV__ENSG00000120337|ENST00000404377|TNFSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2023620605469	3	406.20341	1215.5884	0.46159	0.0001875	-2.6628	-0.0010817	-2.2012	-0.00089415	406.20220140731254	17.645	0.44887	17.439	17.216	17.664	-0.20669					21	8	4	0	0	0	1.0074	1	196	196		35.178	0.026198	1	184590	+		83780	22529	58434	58526	92784	92784					-0.01076978850278465
VHLEYTGGVNQ	11	Unmodified	_VHLEYTGGVNQ_					0	0	0			REV__ENSG00000120337|ENST00000404377|TNFSF18	REV__ENSG00000120337|ENST00000404377|TNFSF18	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	406.20341	1215.5884	1.6229	0.00065921	-3.6758	-0.0014931	-2.0529	-0.0008339	406.2018038899567	17.593	0.39863	17.439	17.259	17.658	-0.15403	0.00014129	-0.00075426	NaN	35.178	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101830	+		83781	22529	58434	58526							-0.01076978850278465
VHLEYTGGVNQ	11	Unmodified	_VHLEYTGGVNQ_					0	0	0			REV__ENSG00000120337|ENST00000404377|TNFSF18	REV__ENSG00000120337|ENST00000404377|TNFSF18	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	406.20341	1215.5884	0.46159	0.0001875	-2.6628	-0.0010817	-2.2012	-0.00089415	406.20220140731254	17.645	0.44887	17.439	17.216	17.664	-0.20669	-0.00014129	0.00048013	NaN	35.178	21	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184590	+		83782	22529	58434	58526							-0.01076978850278465
VHLFRLGQPE	10	Unmodified	_VHLFRLGQPE_					0	0	0			REV__ITIH2|p.N310Tfs*8|1|0.09|ENSG00000151655|chr10:7723505-7723505|C/-|frameshift_variant	REV__ITIH2|p.N310Tfs*8|1|0.09|ENSG00000151655|chr10:7723505-7723505|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.3576049804688	2	598.332747	1194.65094	0.027716	1.6584E-05	2.5666	0.0015357	2.5943	0.0015522	598.3343727276983	91.301	0.41894	91.162	90.983	91.402	-0.13942					15	9	2	0	0	0	0.03519	1	11176	11176		10.866	0	1	66660	+		83783	24786	58435	58527	92785	92785					0.061402120085631395
VHLGIFFMGIF	11	Unmodified	_VHLGIFFMGIF_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	640.3478393554688	2	640.846645	1279.67874	-1.0536	-0.00067522	0.58089	0.00037226	-0.47274	-0.00030296	641.3486832904243	100.03	0.48997	99.9	99.637	100.13	-0.13364					25	14	4	0	0	0	0.024733	1	12421	12421		17.365	0	1	610450			83784	6248	58436	58528	92786	92786					0.05008398944437431
VHLGVEPESP	10	Unmodified	_VHLGVEPESP_					0	0	0		ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	ENSG00000166261|ENST00000530393|ZNF202	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7978515625	2	532.274564	1062.53457	-0.46286	-0.00024637	-2.5628	-0.0013641	-3.0256	-0.0016105	532.2755402263527	100.25	0.45369	100.26	100.1	100.55	0.010117					21	10	3	0	0	0	0.03519	1	12818	12818		49.442	1.7842	1	101040			83785	7530	58437	58529	92787	92787					0.0058084871798200766
VHLHQWTL	8	Unmodified	_VHLHQWTL_					0	0	0		ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8195190429688	2	517.282526	1032.5505	-1.5508	-0.00080221	-0.63541	-0.00032868	-2.1862	-0.0011309	517.2830279633703	91.556	0.68832	91.407	91.097	91.785	-0.1487					57	15	5	0	0	0	0.027866	1	11260	11260		31.955	1.4512	1	333990			83786	5696	58438	58530	92788	92788					0.03552599745557927
VHLHWWLWWLW	11	Unmodified	_VHLHWWLWWLW_					0	0	0		ENST00000361229.8_1_X:101976007-102003782:+|nuORF;ENST00000448867.1_1_X:102001081-102003782:+|nuORF	ENST00000361229.8_1_X:101976007-102003782:+|nuORF	ENST00000361229.8_1_X:101976007-102003782:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2303771972656	4	416.218666	1660.84556	0.09775	4.0685E-05	2.5862	0.0010764	2.6839	0.0011171	416.21966607295406	25.873	0.34497	25.873	25.779	26.124	0					13	7	2	0	0	0	0.024901	1	1279	1279		1.523	1.523	1	54539			83787	12787	58439	58531	92789	92789					0.04157007884350605
VHLLLGGIL	9	Unmodified	_VHLLLGGIL_					0	0	0			REV__nc|ENSG00000134490|Q24JQ0-2|TMEM241	REV__nc|ENSG00000134490|Q24JQ0-2|TMEM241	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.7899169921875	2	467.807845	933.601138	-0.2413	-0.00011288	-1.248	-0.00058381	-1.4893	-0.0006967	467.8068604434439	26.934	0.18965	27.015	26.841	27.031	0.081293					6	4	2	0	0	0	0.024541	1	1362	1362		21.702	0	1	31631	+		83788	23458	58440	58532	92790	92790					0.13168129070572832
VHLLQHLKA	9	Unmodified	_VHLLQHLKA_					0	0	0		ENST00000595671.5_1_19:57286058-57293785:-|nuORF;nc|ENSG00000269699|Q9NZV7|ZIM2;ENSG00000269699|ENST00000629319|ZIM2	ENST00000595671.5_1_19:57286058-57293785:-|nuORF	ENST00000595671.5_1_19:57286058-57293785:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3026123046875	2	529.827101	1057.63965	-0.62536	-0.00033133	3.2771	0.0017363	2.6517	0.001405	529.8288172801822	34.53	0.51881	34.354	34.011	34.53	-0.17557					21	12	2	0	0	0	0.024523	1	2485	2485		29.15	0	1	253310			83789	10997	58441	58533	92791	92791					0.11313434705061809
VHLNIGIPSL	10	Unmodified	_VHLNIGIPSL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A;ENST00000497678.2_1_1:52834449-52834671:+|nuORF	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.3046875	2	531.818941	1061.62333	-0.57461	-0.00030559	-0.0864	-4.5949E-05	-0.66101	-0.00035154	531.8188032985591	61.247	0.51833	61.033	60.756	61.274	-0.2134					20	13	2	0	0	0	0.03519	1	7033	7033		47.657	0	1	260210			83790	3998	58442	58534	92792	92792					0.09498308748334239
VHLNRKVF	8	Unmodified	_VHLNRKVF_					0	0	0		nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;ENSG00000140015|ENST00000322893|KCNH5;nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1	nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000143473|O95259-2|KCNH1	nc|ENSG00000140015|Q8NCM2-2|KCNH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7766418457031	2	506.806168	1011.59778	0.83094	0.00042113	3.7422	0.0018966	4.5731	0.0023177	507.3081149391232	51.183	0.30975	51.072	50.859	51.169	-0.11163					10	7	2	0	0	0	0.027866	1	5219	5219		28.254	6.5519	1	208930			83791	5386;5650	58443	58535	92793	92793					0.09244879016557661
VHMLKSCLS	9	Unmodified	_VHMLKSCLS_					0	0	0		ENST00000582050.1_1_17:7481447-7481477:+|nuORF	ENST00000582050.1_1_17:7481447-7481477:+|nuORF	ENST00000582050.1_1_17:7481447-7481477:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.2868957519531	2	509.26463	1016.51471	-0.13868	-7.0624E-05	-3.1329	-0.0015955	-3.2716	-0.0016661	509.26091067207904	53.515	1.1396	53.256	52.564	53.704	-0.25838					43	30	3	0	0	0	0.024	1	5519	5519		65.803	7.9919	1	350550			83792	17171	58444	58536	92794	92794					0.0071105818203704985
VHMLKSCLS	9	Unmodified	_VHMLKSCLS_					0	0	0		ENST00000582050.1_1_17:7481447-7481477:+|nuORF	ENST00000582050.1_1_17:7481447-7481477:+|nuORF	ENST00000582050.1_1_17:7481447-7481477:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.26463	1016.51471	-0.91063	-0.00046375	-5.7449	-0.0029257	-6.6556	-0.0033894	509.2615092440499	53.387	0.46997	53.239	53.023	53.493	-0.14724	0.0036374	0.00016324	NaN	65.803	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269020			83793	17171	58444	58536							0.0071105818203704985
VHMLKSCLS	9	Unmodified	_VHMLKSCLS_					0	0	0		ENST00000582050.1_1_17:7481447-7481477:+|nuORF	ENST00000582050.1_1_17:7481447-7481477:+|nuORF	ENST00000582050.1_1_17:7481447-7481477:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.26463	1016.51471	-0.45838	-0.00023344	-6.4346	-0.0032769	-6.8929	-0.0035103	509.26124476576285	53.116	0.76277	53.212	52.83	53.592	0.095669	-0.024273	-0.00053916	NaN	65.803	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293640			83794	17171	58444	58536							0.0071105818203704985
VHMQGVSL	8	Unmodified	_VHMQGVSL_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7430725097656	2	435.728738	869.442923	-0.18626	-8.1159E-05	-2.3408	-0.00102	-2.5271	-0.0011011	435.7274345838842	33.608	0.65574	33.608	33.356	34.011	0					32	17	3	0	0	0	0.027866	1	2415	2415		31.955	19.748	1	343820	+		83795	27515	58445	58537	92795	92795					0.002978868198283635
VHMVPGKPM	9	Unmodified	_VHMVPGKPM_					0	0	0		EEF1A1|p.D403H|1|0.27|ENSG00000156508|chr6:73518087-73518087|C/G|missense_variant	EEF1A1|p.D403H|1|0.27|ENSG00000156508|chr6:73518087-73518087|C/G|missense_variant	EEF1A1|p.D403H|1|0.27|ENSG00000156508|chr6:73518087-73518087|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.26171875	2	498.26189	994.509228	-0.07118	-3.5466E-05	-3.7016	-0.0018444	-3.7728	-0.0018798	498.2593387357041	48.193	0.80216	48.006	47.355	48.157	-0.18684					58	21	6	0	0	0	0.024293	1	4769	4769		42.474	7.2737	1	1793200			83796	682	58446	58538	92796	92796					0.011753793902357756
VHNYIQVVRL	10	Unmodified	_VHNYIQVVRL_					0	0	0			REV__ENST00000502187.5_1_14:98426074-98426648:-|nuORF	REV__ENST00000502187.5_1_14:98426074-98426648:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.245361328125	3	414.24354	1239.70879	0.64048	0.00026531	2.9892	0.0012383	3.6297	0.0015036	414.2446662000623	50.752	0.94818	50.752	50.411	51.359	0					73	26	4	0	0	0	1.0816	1	5345	5345		35.152	3.6222	1	4416100	+		83797	33920	58447	58539	92797	92797					0.09852473933983674
VHPAGILY	8	Unmodified	_VHPAGILY_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	435.21905517578125	2	435.247621	868.480688	-0.34491	-0.00015012	-4.3875	-0.0019096	-4.7324	-0.0020598	435.24539114006035	30.386	0.50112	30.395	30.164	30.665	0.0086708					16	11	2	0	0	0	0.027866	1	1936	1936		16.705	0	1	105380			83798	6595	58448	58540	92798	92798					0.041187210769294325
VHPAVALGLS	10	Unmodified	_VHPAVALGLS_					0	0	0			REV__DDX10|p.R509H|1|0.27|ENSG00000178105|chr11:108723023-108723023|G/A|missense_variant	REV__DDX10|p.R509H|1|0.27|ENSG00000178105|chr11:108723023-108723023|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.28485107421875	2	482.284734	962.554916	0.45539	0.00021963	-0.73141	-0.00035275	-0.27602	-0.00013312	482.2843740070333	54.345	1.4847	54.443	54.114	55.598	0.098015					81	41	2	0	0	0	0.9856	1	5911	5911		47.916	7.343	1	27421000	+		83799	19658	58449	58541	92799	92799					0.07214064168454115
VHPEVTVKKM	10	Unmodified	_VHPEVTVKKM_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	583.7966918945312	2	584.331359	1166.64816	-0.60109	-0.00035123	-2.8593	-0.0016708	-3.4604	-0.002022	584.3293691774901	69.454	0.37833	69.161	68.896	69.275	-0.29291					16	9	3	0	0	0	0.03519	1	8343	8343		40.778	2.9666	1	191170			83800	8896	58450	58542	92800	92800					0.07150620559377785
VHPEVTVKKM	10	Unmodified	_VHPEVTVKKM_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	584.331359	1166.64816	-1.4363	-0.0008393	-1.6102	-0.00094087	-3.0465	-0.0017802	584.3301728243744	69.12	0.37428	69.12	68.898	69.273	0	-0.041817	0.001161	NaN	40.778	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130840			83801	8896	58450	58542							0.07150620559377785
VHPEVTVKKM	10	Unmodified	_VHPEVTVKKM_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	584.331359	1166.64816	0.073418	4.29E-05	-3.4647	-0.0020245	-3.3913	-0.0019816	584.3290892091546	69.189	0.37445	69.205	69.014	69.388	0.015129	0.042906	-0.0010063	NaN	40.778	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172440			83802	8896	58450	58542							0.07150620559377785
VHPLGSVLPE	10	Unmodified	_VHPLGSVLPE_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.296630859375	2	524.295299	1046.57605	-0.31499	-0.00016515	4.1351	0.002168	3.8202	0.0020029	524.2973676751948	100.38	1.3018	100.39	99.91	101.21	0.010117					96	32	5	0	0	0	0.67706	1	12776	12776		68.787	2.8894	1	2834100	+		83803	26866	58451	58543	92801	92801					0.054620294773030764
VHPLRHEHV	9	Unmodified	_VHPLRHEHV_					0	0	0			REV__ENST00000567110.1_1_16:56481699-56485159:-|nuORF	REV__ENST00000567110.1_1_16:56481699-56485159:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.273193359375	2	562.309606	1122.60466	-0.34973	-0.00019665	2.6078	0.0014664	2.2581	0.0012697	562.3113143314763	64.274	0.47059	64.047	63.949	64.42	-0.22773					13	11	2	0	0	0	0.024535	1	7325	7325		25.45	1.2474	1	117070	+		83804	26097	58452	58544	92802	92802					0.04826191897132048
VHPLSTPLSP	10	Unmodified	_VHPLSTPLSP_					0	0	0		ENST00000473757.5_1_7:99936468-99948908:+|nuORF	ENST00000473757.5_1_7:99936468-99948908:+|nuORF	ENST00000473757.5_1_7:99936468-99948908:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2977905273438	2	524.295299	1046.57605	-0.31499	-0.00016515	4.1351	0.002168	3.8202	0.0020029	524.2973676751948	100.38	1.3018	100.39	99.91	101.21	0.010117					96	32	5	0	0	0	0.91051	1	12767	12767		53.351	2.1588	1	2834100			83805	15017	58453	58545	92803	92803					0.05462029477325814
VHPQRRSHS	9	Unmodified	_VHPQRRSHS_					0	0	0			REV__nc|ENSG00000188372|P21754-2|ZP3	REV__nc|ENSG00000188372|P21754-2|ZP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.2640380859375	2	552.294488	1102.57442	-0.084579	-4.6712E-05	3.6703	0.0020271	3.5857	0.0019804	552.2967359315668	61.519	0.57808	61.519	61.18	61.758	0					19	14	3	0	0	0	0.024487	1	7151	7151		17.365	0	1	100360	+		83806	28034	58454	58546	92804	92804					0.02723833231948447
VHPVACLKVN	10	Unmodified	_VHPVACLKVN_					0	0	0		ENST00000341084.6_1_8:101271265-101271364:-|nuORF	ENST00000341084.6_1_8:101271265-101271364:-|nuORF	ENST00000341084.6_1_8:101271265-101271364:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.2921142578125	2	540.305144	1078.59573	-0.26625	-0.00014386	3.6226	0.0019573	3.3564	0.0018135	540.3076446483748	72.28	0.20193	72.003	71.868	72.07	-0.27668					6	4	2	0	0	0	0.03519	1	8463	8463		20.947	0	1	50663			83807	12483	58455	58547	92805	92805					0.05958082216443472
VHQALKGRL	9	Unmodified	_VHQALKGRL_					0	0	0		ENST00000242059.9_1_7:29963066-29963327:-|nuORF	ENST00000242059.9_1_7:29963066-29963327:-|nuORF	ENST00000242059.9_1_7:29963066-29963327:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.31622314453125	2	511.3169	1020.61925	-0.40085	-0.00020496	0.0018113	9.2615E-07	-0.39904	-0.00020404	511.3167968113799	22.52	1.4526	22.444	21.514	22.966	-0.075296					61	30	4	0	0	0	0.67308	1	797	797		47.916	7.343	1	462260			83808	11284	58456	58548	92806	92806					0.10976264045268636
VHQASNII	8	Unmodified	_VHQASNII_					0	0	0		ENST00000371711.4_1_20:48250044-48250149:-|nuORF	ENST00000371711.4_1_20:48250044-48250149:-|nuORF	ENST00000371711.4_1_20:48250044-48250149:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.2275695800781	2	441.245609	880.476666	-0.3214	-0.00014182	0.55977	0.00024699	0.23837	0.00010518	441.24559339600677	34.987	1.1882	35.031	34.634	35.823	0.044437					67	30	3	0	0	0	0.027866	1	2560	2560		25.45	1.2474	1	894240			83809	13010	58457	58549	92807	92807					0.03164631583240407
VHQFGPAVS	9	Unmodified	_VHQFGPAVS_					0	0	0			REV__nc|ENSG00000178795|Q6W3E5|GDPD4	REV__nc|ENSG00000178795|Q6W3E5|GDPD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.245361328125	2	471.245609	940.476666	-0.53732	-0.00025321	0.28698	0.00013524	-0.25034	-0.00011797	471.2456433428432	47.025	0.93951	46.832	46.545	47.484	-0.19387					62	25	4	0	0	0	0.55828	1	4561	4561		55.504	2.1528	1	3611400	+		83810	36980	58458	58550	92808	92808					0.00404631583239734
VHQVVLRF	8	Unmodified	_VHQVVLRF_					0	0	0		ENST00000230895.10_2_5:10680115-10680181:-|nuORF	ENST00000230895.10_2_5:10680115-10680181:-|nuORF	ENST00000230895.10_2_5:10680115-10680181:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7378845214844	2	499.300719	996.586885	-1.528	-0.00076295	-3.4492	-0.0017222	-4.9772	-0.0024851	499.2994782999724	33.722	0.47329	33.547	33.268	33.742	-0.17557					23	11	3	0	0	0	0.027866	1	2403	2403		21.702	2.3424	1	265580			83811	11236	58459	58551	92809	92809					0.08845476642284211
VHRFLLQA	8	Unmodified	_VHRFLLQA_					0	0	0		ENSG00000125351|ENST00000276201|UPF3B;ENST00000478840.1_1_X:118974578-118977244:-|nuORF	ENSG00000125351|ENST00000276201|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2908630371094	2	492.292894	982.571235	-0.45798	-0.00022546	-4.1068	-0.0020218	-4.5648	-0.0022472	492.29085079942007	20.553	0.67523	20.449	20.03	20.705	-0.10477					18	13	2	0	0	0	0.85409	1	530	530		54.765	3.572	1	775280			83812	4097	58460	58552	92810	92810					0.07925190125240533
VHRGCLLLSSE	11	Unmodified	_VHRGCLLLSSE_					0	0	0			REV__chr11:44566061-44587475|148|46.86|0.61|6.27|+|2|None,CD82|3	REV__chr11:44566061-44587475|148|46.86|0.61|6.27|+|2|None,CD82|3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.21826171875	3	405.216774	1212.62849	-0.074455	-3.017E-05	-0.96728	-0.00039196	-1.0417	-0.00042213	405.2157985393351	57.222	0.74777	57.054	56.858	57.606	-0.1672					25	19	2	0	0	0	0.024762	1	6223	6223		11.455	0	1	139190	+		83813	19350	58461	58553	92811	92811					0.030682445486490906
VHRIVGTN	8	Unmodified	_VHRIVGTN_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-8|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-8|TRPM3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2581481933594	2	448.259051	894.503549	0.74944	0.00033594	-0.89695	-0.00040207	-0.14751	-6.6124E-05	448.2585106257318	89.09	1.8304	89.069	88.61	90.44	-0.021645					94	43	4	0	0	0	1.0338	1	11250	11250		31.955	0	1	7259500	+		83814	20706	58462	58554	92812	92812					0.05207740194418875
VHRLVVVN	8	Unmodified	_VHRLVVVN_					0	0	0		nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.258544921875	2	468.292894	934.571235	-0.66069	-0.0003094	-0.52802	-0.00024727	-1.1887	-0.00055667	468.2925011751329	44.909	0.41644	44.76	44.557	44.974	-0.1488					15	11	2	0	0	0	0.027866	1	4329	4329		19.36	0	1	102670			83815	2801	58463	58555	92813	92813					0.10133190125225155
VHRPGLDAHSR	11	Unmodified	_VHRPGLDAHSR_					0	0	0		ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	ENST00000344575.4_1_7:72848585-72849218:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	415.5597839355469	3	415.55841	1243.6534	0.37394	0.00015539	2.5511	0.0010601	2.925	0.0012155	415.55934743142825	18.88	1.1282	18.749	18.45	19.579	-0.13148					50	22	4	0	0	0	1.0592	1	335	335		22.562	1.5294	1	143050			83816	12553	58464	58556	92814	92814					0.04132060466213261
VHRPLVSL	8	Unmodified	_VHRPLVSL_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5	REV__nc|ENSG00000173175|O95622-2|ADCY5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2278747558594	2	460.787444	919.560336	-0.62093	-0.00028612	0.78285	0.00036073	0.16192	7.4611E-05	460.7875969270304	25.423	0.44575	25.423	25.248	25.694	0					11	10	2	0	0	0	0.027866	1	1213	1213		47.916	23.713	1	31914	+		83817	26749	58465	58557	92815	92815					0.09733787750928968
VHRPLVSL	8	Unmodified	_VHRPLVSL_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5	REV__nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	460.787444	919.560336	0.67892	0.00031284	-0.49958	-0.0002302	0.17934	8.2637E-05	460.7871870842724	25.443	0.49736	25.523	25.294	25.792	0.08009	-0.042231	0.0020212	NaN	47.916	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24359	+		83818	26749	58465	58557							0.09733787750928968
VHRPLVSL	8	Unmodified	_VHRPLVSL_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5	REV__nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	460.787444	919.560336	-0.29135	-0.00013425	-5.5574	-0.0025608	-5.8488	-0.002695	460.78499604070464	25.921	0.22551	25.75	25.581	25.807	-0.17078	0.1848	-0.00264	NaN	47.916	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128520	+		83819	26749	58465	58557							0.09733787750928968
VHRYEESE	8	Unmodified	_VHRYEESE_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.266845703125	2	524.738345	1047.46214	0.023737	1.2456E-05	-2.4362	-0.0012784	-2.4124	-0.0012659	524.7380926948665	53.056	0.58965	52.928	52.591	53.181	-0.12705					36	14	4	0	0	0	0.027866	1	5495	5495		12.959	0	1	468050			83820	3256	58466	58558	92816	92816					-0.05969485355581128
VHSKSSKELSY	11	Unmodified	_VHSKSSKELSY_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.8463439941406	3	422.222582	1263.64592	-0.79429	-0.00033537	0.26592	0.00011228	-0.52837	-0.00022309	422.2223673452669	33.555	0.39925	33.389	33.156	33.555	-0.16565					14	9	2	0	0	0	0.02473	1	2364	2364		33.039	12.007	1	87513	+		83821	28437	58467	58559	92817	92817					0.024638633552967804
VHSLINLPA	9	Unmodified	_VHSLINLPA_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.28466796875	2	482.284734	962.554916	1.0582	0.00051037	-1.7424	-0.00084035	-0.68419	-0.00032997	482.2839715054123	54.672	1.7378	54.466	54.087	55.825	-0.20613					114	47	4	0	0	0	0.33245	1	5795	5795		71.296	2.811	1	19378000			83822	2577	58468	58560	92818	92818					0.07214064168465484
VHSNVDPLI	9	Unmodified	_VHSNVDPLI_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2721252441406	2	497.271824	992.529095	0.26598	0.00013226	0.62195	0.00030928	0.88793	0.00044154	497.2720541478914	89.561	1.6965	89.577	89.133	90.83	0.015724					66	40	3	0	0	0	0.56934	1	11238	11238		54.776	1.4249	1	1230800	+		83823	20103	58469	58561	92819	92819					0.03253169926199462
VHSPHLKDA	9	Unmodified	_VHSPHLKDA_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2934265136719	2	502.269616	1002.52468	0.066753	3.3528E-05	-1.1659	-0.00058561	-1.0992	-0.00055208	502.2699883247648	82.36	0.73759	82.179	82.027	82.765	-0.18079					23	16	2	0	0	0	0.024477	1	9967	9967		35.618	0	1	200780			83824	2976	58470	58562	92820	92820					0.023517055032812095
VHSYSGVSSL	10	Unmodified	_VHSYSGVSSL_					0	0	0		ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.79296875	2	518.258914	1034.50327	-0.22898	-0.00011867	0.0067171	3.4812E-06	-0.22226	-0.00011519	518.2589336356956	55.401	0.53162	55.245	55.059	55.591	-0.15602					19	14	2	0	0	0	0.03519	1	6119	6119		27.882	10.517	1	313930			83825	3180	58471	58563	92821	92821					-0.01259724316082611
VHTARALLD	9	Unmodified	_VHTARALLD_					0	0	0		PCDHGA12|p.R627H|1|0.09|ENSG00000253159|chr5:141432639-141432639|G/A|missense_variant	PCDHGA12|p.R627H|1|0.09|ENSG00000253159|chr5:141432639-141432639|G/A|missense_variant	PCDHGA12|p.R627H|1|0.09|ENSG00000253159|chr5:141432639-141432639|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2859802246094	2	498.285266	994.555979	-0.69899	-0.0003483	-1.4859	-0.00074039	-2.1849	-0.0010887	498.2841397636483	36.14	0.47932	35.935	35.684	36.164	-0.20518					23	13	3	0	0	0	0.024427	1	2766	2766		19.997	0	1	254210			83826	18950	58472	58564	92822	92822					0.05848278537382612
VHTCVHTGLW	10	Unmodified	_VHTCVHTGLW_					0	0	0			REV__nc|ENSG00000107798|P38571-2|LIPA	REV__nc|ENSG00000107798|P38571-2|LIPA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.78173828125	2	576.784576	1151.5546	-0.24821	-0.00014316	-3.7636	-0.0021708	-4.0118	-0.0023139	576.7822400949027	65.926	1.9371	65.684	64.6	66.538	-0.24145					163	49	4	0	0	0	0.941	1	7593	7593		51.335	12.083	1	1844500	+		83827	21687	58473	58565	92823	92823					-0.01511678823044349
VHTHLLNPE	9	Unmodified	_VHTHLLNPE_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;ENST00000466513.1_1_17:57742174-57744343:+|nuORF;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	CLTC-VMP1|9|fusion;ENSG00000070371|ENST00000427926|CLTCL1	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	530.2821044921875	2	530.282723	1058.55089	-0.49066	-0.00026019	0.72581	0.00038489	0.23516	0.0001247	530.2828975892907	48.216	1.009	48.283	47.97	48.979	0.066795					91	27	4	0	0	0	0.4752	1	4854	4854		60.972	0.85368	1	6683100			83828	456;1424	58474	58566	92824	92824					0.023959746747550525
VHTHYQEE	8	Unmodified	_VHTHYQEE_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2504272460938	2	521.733063	1041.45157	0.21174	0.00011047	-0.65368	-0.00034105	-0.44195	-0.00023058	522.2318846878959	71.884	0.12253	71.678	71.577	71.699	-0.20613					4	2	2	0	0	0	0.027866	1	8398	8398		25.45	0	1	72208			83829	2676	58475	58567	92825	92825					-0.06749468010002602
VHTILTADLVI	11	Unmodified	_VHTILTADLVI_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8564453125	2	597.858264	1193.70197	-1.6739	-0.0010008	-1.798	-0.001075	-3.4719	-0.0020757	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.0292	1	11786	11786		30.318	2.2362	1	4454900			83830	1402	58476	58568	92826	92826					0.11287116262747077
VHTLFCIY	8	Unmodified	_VHTLFCIY_					0	0	0		ENST00000379238.5_1_9:34017145-34048882:-|nuORF	ENST00000379238.5_1_9:34017145-34048882:-|nuORF	ENST00000379238.5_1_9:34017145-34048882:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.2554931640625	2	498.254588	994.494624	-0.86216	-0.00042958	3.6792	0.0018332	2.817	0.0014036	498.2562842467697	62.235	0.97144	62.057	61.412	62.383	-0.17781					56	24	4	0	0	0	0.67787	1	7002	7002		69.093	2.6637	1	2617800			83831	13258	58477	58569	92827	92827					-0.002843694862690427
VHTVVFLL	8	Unmodified	_VHTVVFLL_					0	0	0		ENST00000344726.9_2_6:79911083-79911197:-|nuORF	ENST00000344726.9_2_6:79911083-79911197:-|nuORF	ENST00000344726.9_2_6:79911083-79911197:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.73797607421875	2	464.286746	926.558939	0.25518	0.00011848	-3.4632	-0.0016079	-3.208	-0.0014894	464.2845079501419	31.944	0.51789	32.013	31.726	32.244	0.068962					18	12	2	0	0	0	0.027866	1	2102	2102		29.842	0	1	113070			83832	12556	58478	58570	92828	92828					0.09272153662175242
VHVFVRFLRTL	11	Unmodified	_VHVFVRFLRTL_					0	0	0			REV__ENSG00000142961|ENST00000319928|MOB3C	REV__ENSG00000142961|ENST00000319928|MOB3C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.800048828125	3	462.950468	1385.82957	0.75446	0.00034928	2.145	0.00099304	2.8995	0.0013423	462.9515182372388	103.42	0.59122	103.41	103.1	103.69	-0.0046005					26	13	3	0	0	0	0.024856	1	13159	13159		13.508	0	1	143660	+		83833	24190	58479	58571	92829	92829					0.15209301647450957
VHVLDGEP	8	Unmodified	_VHVLDGEP_					0	0	0			REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	REV__ENST00000529567.5_1_11:89372457-89431764:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.5483093261719	2	433.224342	864.434132	0.57817	0.00025048	1.4493	0.00062787	2.0275	0.00087835	433.2249212351303	25.087	0.77719	25.167	24.641	25.418	0.08009					24	17	2	0	0	0	0.027866	1	1044	1044		20.482	8.2751	1	176660	+		83834	34517	58480	58572	92830	92830					-0.0035076354498642104
VHVQGQEPL	9	Unmodified	_VHVQGQEPL_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2477722167969	2	503.769448	1005.52434	-1.7204	-0.00086671	2.146	0.0010811	0.42557	0.00021439	503.7703640212608	60.452	0.63639	60.531	60.242	60.879	0.078888					27	11	3	0	0	0	0.024405	1	6914	6914		27.882	0	1	536570			83835	1434	58481	58573	92831	92831					0.021802857834245515
VHVQGQEPL	9	Unmodified	_VHVQGQEPL_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	503.769448	1005.52434	-0.9842	-0.00049581	1.2862	0.00064796	0.30203	0.00015215	503.76999529447323	60.573	0.39952	60.573	60.33	60.73	0	-0.012248	-0.00039326	NaN	51.335	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605650			83836	1434	58481	58573							0.021802857834245515
VHVQGQEPL	9	Unmodified	_VHVQGQEPL_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.769448	1005.52434	-0.771	-0.00038841	1.1241	0.00056628	0.35308	0.00017787	503.7700422741733	60.865	0.52099	60.652	60.235	60.756	-0.21339	0.066638	-0.00055662	NaN	51.335	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612510			83837	1434	58481	58573							0.021802857834245515
VHVVVRQL	8	Unmodified	_VHVVVRQL_					0	0	0			REV__ENSG00000263528|ENST00000581977|IKBKE	REV__ENSG00000263528|ENST00000581977|IKBKE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.24932861328125	2	475.300719	948.586885	-0.63763	-0.00030307	0.28605	0.00013596	-0.35159	-0.00016711	475.30070327956935	48.882	0.68753	48.954	48.662	49.35	0.071636					40	18	3	0	0	0	0.027866	1	5012	5012		26.796	5.0938	1	1271300	+		83838	29129	58482	58574	92832	92832					0.11053476642291571
VHWIPAVCACP	11	Unmodified	_VHWIPAVCACP_					0	0	0			REV__ENST00000528668.1_8:145484669-145484995:+|nuORF	REV__ENST00000528668.1_8:145484669-145484995:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.7445678710938	2	598.291179	1194.56781	0.26007	0.0001556	-2.2567	-0.0013502	-1.9967	-0.0011946	598.2894393335773	59.185	0.84148	58.943	58.661	59.502	-0.24165					45	20	3	0	0	0	0.02474	1	6597	6597		24.203	0	1	776520	+		83839	34497	58483	58575	92833	92833					-0.02169564035307303
VHWTSCVSIFI	11	Unmodified	_VHWTSCVSIFI_					0	0	0			REV__ENSG00000134802|ENST00000395124|SLC43A3	REV__ENSG00000134802|ENST00000395124|SLC43A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	430.8860168457031	3	431.221636	1290.64308	-0.69187	-0.00029835	-3.3059	-0.0014256	-3.9978	-0.0017239	431.220222637229	21.995	1.2894	22.066	21.546	22.835	0.071487					68	26	4	0	0	0	0.024748	1	682	682		37.508	14.13	1	1080600	+		83840	23482	58484	58576	92834	92834					0.009383166967836587
VHYGVNFTI	9	Unmodified	_VHYGVNFTI_					0	0	0			REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000168350|ENST00000305631|DEGS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3140869140625	2	525.274367	1048.53418	-0.52035	-0.00027332	1.592	0.00083623	1.0716	0.00056291	525.2748188163445	73.674	0.25797	73.402	73.241	73.499	-0.27126					9	6	2	0	0	0	0.024466	1	8947	8947		18.324	0	1	107250	+		83841	26250	58485	58577	92835	92835					0.01185473788791569
VIAALIHF	8	Unmodified	_VIAALIHF_					0	0	0		nc|ENSG00000120798|P13056-3|NR2C1	nc|ENSG00000120798|P13056-3|NR2C1	nc|ENSG00000120798|P13056-3|NR2C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.7882080078125	2	442.273638	882.532724	0.47051	0.0002081	-3.7115	-0.0016415	-3.241	-0.0014334	442.2720581806165	42.974	0.80086	43.005	42.685	43.486	0.030823					27	21	2	0	0	0	0.027866	1	3952	3952		24.504	0	1	243770			83842	18217	58486	58578	92836	92836					0.08675884490708086
VIADSFCN	8	Unmodified	_VIADSFCN_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.697103	867.379654	0.26523	0.0001153	-3.8393	-0.0016689	-3.5741	-0.0015536	434.695307327571	42.362	0.45221	42.388	42.152	42.605	0.026016					29	12	3	0	0	0	0.027866	1	3864	3864		55.504	45.319	1	433350	+		83843	29153	58487	58579	92837	92837					-0.05934098688067024
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.3080139160156	2	485.30821	968.601866	-0.23038	-0.00011181	0.35812	0.0001738	0.12774	6.1991E-05	485.3082621800352	65.341	1.3476	65.341	64.836	66.184	0					91	36	4	0	0	0	0.013887	5	7765	7727;7740;7753;7765;7777		180.93	56.332	1	10654000			83844	2316	58488	58580	92838;92839;92840;92841;92842	92841					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.3086853027344	2	485.30821	968.601866	-0.29196	-0.00014169	0.35238	0.00017101	0.06042	2.9322E-05	485.30829853028314	65.725	1.3195	65.453	64.94	66.26	-0.27282					90	35	4	0	0	0	0.013887	5	7776	7743;7752;7764;7776;7789		180.93	56.332	1	9629800			83845	2316	58488	58580	92843;92844;92845;92846;92847	92846					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.3082580566406	2	485.30821	968.601866	-0.41659	-0.00020217	0.42584	0.00020666	0.0092533	4.4907E-06	485.30831425558443	65.434	1.2765	65.472	64.967	66.244	0.037384					97	34	4	0	0	0	0.014034	5	7701	7652;7663;7675;7688;7701		166.68	55.03	1	9677100			83846	2316	58488	58580	92848;92849;92850;92851;92852	92852					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.3096923828125	2	485.30821	968.601866	-0.15956	-7.7435E-05	0.26193	0.00012712	0.10237	4.9681E-05	485.30816530660144	65.719	0.94083	65.478	65.167	66.108	-0.24145					57	22	4	0	0	0	0.12914	2	7509	7509;7529		104.06	24.39	1	1878000			83847	2316	58488	58580	92853;92854	92853					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.3082580566406	2	485.30821	968.601866	-1.0702	-0.0005194	1.0501	0.00050961	-0.020175	-9.7913E-06	485.30857033540383	65.656	1.0206	65.442	65.135	66.156	-0.21327					54	24	4	0	0	0	0.17845	1	7513	7513		93.143	21.848	1	1511200			83848	2316	58488	58580	92855	92855					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.3087463378906	2	485.30821	968.601866	-0.22823	-0.00011076	0.30346	0.00014727	0.075232	3.6511E-05	485.3082250245553	65.696	0.93414	65.445	65.148	66.082	-0.25112					49	22	3	0	0	0	0.17845	2	7499	7499;7519		93.143	26.714	1	1577400			83849	2316	58488	58580	92856;92857	92856					0.11630923719633302
VIAELKAIA	9	Unmodified	_VIAELKAIA_					0	0	0			REV__ENSG00000140057|ENST00000267584|AK7	REV__ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2967529296875	2	464.29731	926.580068	-0.56623	-0.0002629	-0.17185	-7.9789E-05	-0.73808	-0.00034269	464.2969062046417	56.57	0.95722	56.406	56.165	57.122	-0.16432					57	26	4	0	0	0	0.2508	1	6286	6286		82.241	2.5279	1	3276400	+		83850	23988	58489	58581	92858	92858					0.11384118971045609
VIAFPLDFRIN	11	Unmodified	_VIAFPLDFRIN_					0	0	0			REV__ENST00000296933.10_1_5:171289513-171289747:-|nuORF	REV__ENST00000296933.10_1_5:171289513-171289747:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7803955078125	3	435.583562	1303.72886	0.64827	0.00028238	1.784	0.0007771	2.4323	0.0010595	435.58378243494553	41.011	0.25231	40.887	40.833	41.086	-0.12317					9	6	2	0	0	0	0.024809	1	3646	3646		12.433	0	1	75181	+		83851	30006	58490	58582	92859	92859					0.089142248739563
VIAFVFEV	8	Unmodified	_VIAFVFEV_					0	0	0		ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2865295410156	2	462.265479	922.516405	0.3897	0.00018014	-3.3124	-0.0015312	-2.9228	-0.0013511	462.26368215057187	52.724	0.5477	52.577	52.326	52.873	-0.14723					17	13	2	0	0	0	0.027866	1	5627	5627		46.766	9.738	1	279560			83852	825	58491	58583	92860	92860					0.052047585339551006
VIAFVFEV	8	Unmodified	_VIAFVFEV_					0	0	0		ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	ENSG00000007866|ENST00000338863|TEAD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.265479	922.516405	-0.28464	-0.00013158	-2.5581	-0.0011825	-2.8428	-0.0013141	462.2631500004372	52.622	0.35824	52.495	52.273	52.632	-0.12706	-0.040715	0.00044497	NaN	37.028	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174370			83853	825	58491	58583							0.052047585339551006
VIAGPWNL	8	Unmodified	_VIAGPWNL_					0	0	0		ENST00000512138.1_1_5:39203048-39250878:-|nuORF	ENST00000512138.1_1_5:39203048-39250878:-|nuORF	ENST00000512138.1_1_5:39203048-39250878:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	435.247621	868.480688	-0.092767	-4.0377E-05	4.1385	0.0018013	4.0458	0.0017609	435.2510496198035	46.691	0.15991	46.497	46.449	46.609	-0.19387					6	4	2	0	0	0	0.027866	1	4500	4500		35.201	0	1	67163			83854	15853	58492	58584	92861	92861					0.04118721076940801
VIAGQIVNL	9	Unmodified	_VIAGQIVNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7869873046875	2	463.78711	925.559667	0.69134	0.00032063	-0.63638	-0.00029515	0.054954	2.5487E-05	463.7866923026978	70.808	1.1213	70.808	70.483	71.604	0					65	27	4	0	0	0	0.4855	1	8592	8592		60.294	2.4827	1	6074700			83855	3559	58493	58585	92862	92862					0.09390948311227021
VIAHPEDI	8	Unmodified	_VIAHPEDI_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	447.2397766113281	2	447.239993	892.465432	-0.043021	-1.9241E-05	-0.52919	-0.00023667	-0.57221	-0.00025592	447.2397669443325	54.553	1.6237	54.308	53.98	55.604	-0.2453					126	46	5	0	0	0	0.75307	1	5831	5831		62.978	10.679	1	33233000	+		83856	22693	58494	58586	92863	92863					0.01489809489100935
VIAINEKLD	9	Unmodified	_VIAINEKLD_					0	0	0			REV__ENSG00000197616|ENST00000405093|MYH6	REV__ENSG00000197616|ENST00000405093|MYH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.27191162109375	2	507.795132	1013.57571	-0.50981	-0.00025888	1.3938	0.00070778	0.88403	0.0004489	507.7957403731583	35.722	0.5359	35.766	35.535	36.071	0.044056					33	13	3	0	0	0	0.024354	1	2732	2732		30.504	4.9296	1	412420	+		83857	28330	58495	58587	92864	92864					0.06946609757483202
VIAKDLVIP	9	Unmodified	_VIAKDLVIP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3030090332031	2	484.312961	966.611368	-0.081779	-3.9607E-05	-0.1024	-4.9593E-05	-0.18418	-8.9199E-05	484.31276607639	86.912	0.58971	86.934	86.547	87.137	0.021263					20	13	2	0	0	0	0.024487	1	10796	10796		31.955	7.7521	1	84446			83858	6479	58496	58588	92865	92865					0.12672692005139652
VIAKDLVIP	9	Unmodified	_VIAKDLVIP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.312961	966.611368	0.31469	0.00015241	-0.016648	-8.063E-06	0.29804	0.00014434	484.3127865252677	86.902	0.42003	86.902	86.647	87.067	0	0.027023	7.0091E-05	NaN	24.203	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66906			83859	6479	58496	58588							0.12672692005139652
VIAKDLVIP	9	Unmodified	_VIAKDLVIP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	484.312961	966.611368	0.076357	3.6981E-05	-0.16135	-7.8143E-05	-0.084992	-4.1163E-05	484.31257063962283	86.833	0.50474	86.788	86.554	87.058	-0.045105	-0.086226	-7.0069E-05	NaN	24.203	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91016			83860	6479	58496	58588							0.12672692005139652
VIAKRKEDS	9	Unmodified	_VIAKRKEDS_					0	0	0		nc|ENSG00000139154|Q6ZN18-3|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3035888671875	2	523.303655	1044.59276	0.47324	0.00024765	-0.96385	-0.00050438	-0.49061	-0.00025674	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.77768	1	10506	10506		40.778	5.1599	1	13836000			83861	18328	58497	58589	92866	92866					0.07224530363282611
VIALELLN	8	Unmodified	_VIALELLN_					0	0	0		nc|ENSG00000165629|P36542-2|ATP5F1C;ENST00000493053.5_1_10:7830135-7848940:+|nuORF;ENSG00000165629|ENST00000356708|ATP5F1C	nc|ENSG00000165629|P36542-2|ATP5F1C	nc|ENSG00000165629|P36542-2|ATP5F1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7579345703125	2	442.776211	883.537869	-0.091687	-4.0597E-05	0.79434	0.00035171	0.70265	0.00031112	442.7764300440748	79.673	0.53902	79.693	79.315	79.855	0.020485					15	12	2	0	0	0	0.027866	1	9805	9805		13.775	0	1	62613			83862	7440	58498	58590	92867	92867					0.09144143562673435
VIALLRIYD	9	Unmodified	_VIALLRIYD_					0	0	0			REV__ENST00000560260.5_1_15:64422114-64427054:+|nuORF	REV__ENST00000560260.5_1_15:64422114-64427054:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3267211914062	2	538.329142	1074.64373	-0.74783	-0.00040258	-3.1387	-0.0016897	-3.8866	-0.0020923	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	0.90698	1	12445	12445		31.955	0.42505	1	21993000	+		83863	20036	58499	58591	92868	92868					0.10939479408125408
VIALTHVL	8	Unmodified	_VIALTHVL_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-4|DOK7	REV__nc|ENSG00000175920|Q18PE1-4|DOK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	433.24285888671875	2	433.278921	864.543289	0.089958	3.8977E-05	0.41996	0.00018196	0.50992	0.00022094	433.2788773970997	46.8	0.5194	46.851	46.579	47.099	0.051395					30	13	3	0	0	0	0.027866	1	4597	4597		28.254	7.7724	1	333620	+		83864	26982	58500	58592	92869	92869					0.10559867145138924
VIALTHVLGE	10	Unmodified	_VIALTHVLGE_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-4|DOK7	REV__nc|ENSG00000175920|Q18PE1-4|DOK7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2922973632812	2	526.310949	1050.60735	-0.3715	-0.00019552	-0.94175	-0.00049565	-1.3132	-0.00069118	526.3102829323857	62.502	0.31009	62.243	62.017	62.327	-0.25824					13	7	2	0	0	0	0.03519	1	6995	6995		6.7355	0	1	705220	+		83865	26982	58501	58593	92870	92870					0.08406602511445271
VIALWKIS	8	Unmodified	_VIALWKIS_					0	0	0			REV__ENSG00000092847|ENST00000373204|AGO1	REV__ENSG00000092847|ENST00000373204|AGO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2882995605469	2	465.294571	928.574589	-0.12816	-5.963E-05	-3.5369	-0.0016457	-3.6651	-0.0017053	465.29293668617026	62.016	0.58547	61.789	61.534	62.119	-0.22663					31	15	3	0	0	0	0.24207	1	7164	7164		133.47	27.054	1	1932000	+		83866	20938	58502	58594	92871	92871					0.10744440179223602
VIAMSYLI	8	Unmodified	_VIAMSYLI_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.8880615234375	2	455.259339	908.504126	-0.77043	-0.00035074	-0.79061	-0.00035993	-1.561	-0.00071068	455.258388678766	37.812	0.441	37.812	37.596	38.037	0					16	12	2	0	0	0	0.027866	1	3133	3133		28.254	3.7503	1	163090			83867	5741	58503	58595	92872	92872					0.046213987992587136
VIAQQGVRTT	10	Unmodified	_VIAQQGVRTT_					0	0	0			REV__NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	REV__NRF1|p.I320Yfs*14|1|0.4|ENSG00000106459|chr7:129710563-129710564|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2786865234375	2	536.809105	1071.60366	1.3653	0.0007329	-1.1013	-0.00059121	0.26396	0.00014169	536.80850443231	24.695	0.34951	24.514	24.418	24.767	-0.18089					11	7	2	0	0	0	0.03519	1	1089	1089		54.776	0	1	117660	+		83868	21620	58504	58596	92873	92873					0.07071932737562747
VIAQRPTL	8	Unmodified	_VIAQRPTL_					0	0	0		ENST00000548303.1_1_12:53819264-53819576:+|nuORF	ENST00000548303.1_1_12:53819264-53819576:+|nuORF	ENST00000548303.1_1_12:53819264-53819576:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.26910400390625	2	449.279452	896.544351	-0.80969	-0.00036378	0.49628	0.00022297	-0.31341	-0.00014081	449.2796449331854	44.038	0.73311	44.038	43.548	44.281	0					28	20	2	0	0	0	0.027866	1	4142	4142		55.504	0	1	238610			83869	16551	58505	58597	92874	92874					0.09194081514044683
VIASGRTN	8	Unmodified	_VIASGRTN_					0	0	0		nc|ENSG00000069188|Q58EX2-2|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF;SDK2|p.R2017Gfs*28|1|0.24|ENSG00000069188|chr17:73348716-73348716|G/-|frameshift_variant;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	nc|ENSG00000069188|Q58EX2-2|SDK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5194396972656	2	409.229959	816.445365	-0.63385	-0.00025939	1.0671	0.00043668	0.43322	0.00017729	409.23030218954614	24.916	0.55668	24.882	24.681	25.238	-0.034395					27	12	3	0	0	0	0.027866	1	1103	1103		27.882	0	1	1107000			83870	18071	58506	58598	92875	92875					0.029800585491329912
VIATPKNKV	9	Unmodified	_VIATPKNKV_					0	0	0			REV__ENSG00000151005|ENST00000280605|TKTL2	REV__ENSG00000151005|ENST00000280605|TKTL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.26611328125	2	485.30821	968.601866	0.15221	7.3871E-05	-0.90368	-0.00043856	-0.75147	-0.00036469	485.3076663629521	69.121	0.99739	68.828	67.936	68.933	-0.29267					33	25	2	0	0	0	0.02435	1	8156	8156		34.173	0	1	167800	+		83871	24743	58507	58599	92876	92876					0.11630923719610564
VIAVSVALP	9	Unmodified	_VIAVSVALP_					0	0	0		ENST00000566486.1_1_16:67261036-67261533:+|nuORF;ENST00000567193.5_1_16:67261036-67261779:+|nuORF;ENST00000563953.5_2_16:67261036-67261779:+|nuORF	ENST00000566486.1_1_16:67261036-67261533:+|nuORF	ENST00000566486.1_1_16:67261036-67261533:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7801513671875	2	434.778754	867.542954	0.41622	0.00018096	2.7977	0.0012164	3.2139	0.0013973	434.7798384167601	42.164	1.8968	42.164	41.579	43.475	0					153	53	3	0	0	0	0.88411	1	3905	3905		33.516	0	1	2761500			83872	16877	58508	58600	92877	92877					0.10388447425293634
VIAVSVALP	9	Unmodified	_VIAVSVALP_					0	0	0		ENST00000566486.1_1_16:67261036-67261533:+|nuORF;ENST00000567193.5_1_16:67261036-67261779:+|nuORF;ENST00000563953.5_2_16:67261036-67261779:+|nuORF	ENST00000566486.1_1_16:67261036-67261533:+|nuORF	ENST00000566486.1_1_16:67261036-67261533:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7804870605469	2	434.778754	867.542954	-0.67943	-0.0002954	3.9749	0.0017282	3.2955	0.0014328	434.7803374546711	40.718	2.068	40.488	39.546	41.614	-0.2303					180	54	4	0	0	0	0.88411	1	3540	3540		33.516	0	1	6443300			83873	16877	58508	58600	92878	92878					0.10388447425293634
VIAVVVGPP	9	Unmodified	_VIAVVVGPP_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	425.7749328613281	2	425.773471	849.53239	-0.44573	-0.00018978	3.8346	0.0016327	3.3889	0.0014429	425.77499342824996	43.306	1.947	43.08	42.753	44.7	-0.22597					119	52	5	0	0	0	0.99355	1	3964	3964		21.702	0	1	11576000	+		83874	25874	58509	58601	92879	92879					0.10160464770865474
VICFLNVNAN	10	Unmodified	_VICFLNVNAN_					0	0	0			REV__nc|ENSG00000166473|Q7Z442|PKD1L2	REV__nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.813720703125	2	553.786784	1105.55902	0.06475	3.5858E-05	0.49035	0.00027155	0.5551	0.00030741	553.787134174537	59.518	0.79339	59.27	58.93	59.723	-0.24842					28	19	2	0	0	0	0.03519	1	6585	6585		20.947	0	1	156550	+		83875	36888	58510	58602	92880	92880					0.010457855998765808
VICLIRGPK	9	Unmodified	_VICLIRGPK_					0	0	0		ENST00000491031.5_1_2:25016788-25038721:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF	ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.8270568847656	2	499.812605	997.610657	-0.38117	-0.00019052	-1.2486	-0.00062405	-1.6297	-0.00081457	500.3135373707719	21.997	0.23693	21.807	21.71	21.947	-0.19072					7	4	2	0	0	0	0.024466	1	721	721		25.45	4.9683	1	38757			83876	15449	58511	58603	92881	92881					0.11175574084438722
VICLPCVTL	9	Unmodified	_VICLPCVTL_					0	0	0		ENST00000404025.2_1_2:32489892-32490824:-|nuORF	ENST00000404025.2_1_2:32489892-32490824:-|nuORF	ENST00000404025.2_1_2:32489892-32490824:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7685852050781	2	480.766474	959.518396	-0.45381	-0.00021818	0.53356	0.00025652	0.07975	3.8341E-05	480.7666361479519	36.568	1.8582	36.525	35.326	37.184	-0.042454					108	49	3	0	0	0	0.4855	1	2931	2931		60.294	2.4827	1	5699900			83877	13700	58512	58604	92882	92882					0.037017279558881455
VICVMSSDMQ	10	Carbamidomethyl (C),2 Oxidation (M)	_VIC(Carbamidomethyl (C))VM(Oxidation (M))SSDM(Oxidation (M))Q_	VIC(1)VMSSDMQ	VICVM(1)SSDM(1)Q	VIC(66)VMSSDMQ	VICVM(66)SSDM(66)Q	0	1	2			REV__ENST00000487189.5_1_16:11118684-11138007:+|nuORF	REV__ENST00000487189.5_1_16:11118684-11138007:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	601.2470092773438	2	601.248517	1200.48248	-0.38166	-0.00022947	-2.2201	-0.0013349	-2.6018	-0.0015643	601.2470115431221	50.335	0.6376	50.056	49.802	50.44	-0.27977					46	16	5	0	0	0	0.71272	1	5095	5095		66.429	15.094	1	2327700	+		83878	33605	58513	58605	92883	92883	442	916;917			-0.10974142073928306
VICVMSSDMQ	10	Carbamidomethyl (C),2 Oxidation (M)	_VIC(Carbamidomethyl (C))VM(Oxidation (M))SSDM(Oxidation (M))Q_	VIC(1)VMSSDMQ	VICVM(1)SSDM(1)Q	VIC(57)VMSSDMQ	VICVM(57)SSDM(57)Q	0	1	2			REV__ENST00000487189.5_1_16:11118684-11138007:+|nuORF	REV__ENST00000487189.5_1_16:11118684-11138007:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	601.2465209960938	2	601.248517	1200.48248	0.22578	0.00013575	-2.6985	-0.0016225	-2.4727	-0.0014867	601.2466658222669	50.168	0.74535	49.988	49.717	50.462	-0.18071					46	19	3	0	0	0	0.85955	1	5077	5077		56.721	7.185	1	2089500	+		83879	33605	58513	58605	92884	92884	442	916;917			-0.10974142073928306
VIDGHIYAV	9	Unmodified	_VIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.76837158203125	2	493.768917	985.523281	0.50835	0.000251	-0.034228	-1.6901E-05	0.47412	0.0002341	493.76852830176335	53.136	0.80629	52.878	52.564	53.37	-0.25838					58	20	4	0	0	0	0.29104	1	5538	5538		76.847	10.417	1	1843100			83880	1680	58514	58606	92885	92885					0.0299407141451411
VIDGHIYAV	9	Unmodified	_VIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.G429S|1|0.23|ENSG00000079999|chr19:10491617-10491617|C/T|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	493.7686462402344	2	493.768917	985.523281	0.04339	2.1424E-05	0.1999	9.8704E-05	0.24329	0.00012013	493.768766589548	52.987	0.69448	52.798	52.551	53.245	-0.18982					43	17	3	0	0	0	0.22754	1	5520	5520		85.359	13.982	1	2442600			83881	1680	58514	58606	92886	92886					0.0299407141451411
VIDIISVFV	9	Unmodified	_VIDIISVFV_					0	0	0			REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__ENSG00000100346|ENST00000402142|CACNA1I	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.8141174316406	2	502.804968	1003.59538	0.29621	0.00014894	-0.049467	-2.4872E-05	0.24674	0.00012406	503.30635278523397	95.799	1.1387	95.805	95.048	96.186	0.0065079					23	17	2	0	0	0	0.024412	1	12185	12185		24.203	0	1	2957000	+		83882	21095;36517	58515	58607	92887	92887					0.09372985768243325
VIDITRSSVF	10	Unmodified	_VIDITRSSVF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.8532104492188	2	568.819138	1135.62372	0.53502	0.00030433	-3.4958	-0.0019885	-2.9608	-0.0016842	568.8189101951832	101.3	0.31814	101.17	100.9	101.22	-0.13156					11	6	2	0	0	0	0.03519	1	12568	12568		49.442	0	1	27962			83883	6479	58516	58608	92888	92888					0.06133683677512636
VIDKLAEYV	9	Unmodified	_VIDKLAEYV_					0	0	0		ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENST00000538548.5_1_12:132198725-132271134:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2960815429688	2	525.297507	1048.58046	0.22599	0.00011871	-1.8762	-0.00098555	-1.6502	-0.00086684	525.2959609605002	81.067	0.98353	80.86	80.508	81.492	-0.20632					54	23	4	0	0	0	0.39228	1	9762	9762		66.429	0	1	1164200			83884	1248	58517	58609	92889	92889					0.05811493900228015
VIDKSHLSK	9	Unmodified	_VIDKSHLSK_					0	0	0		ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.3077392578125	2	513.800749	1025.58694	-1.26	-0.00064739	1.336	0.00068646	0.076033	3.9066E-05	513.8011450703859	44.467	0.5788	44.322	43.848	44.426	-0.14471					27	16	3	0	0	0	0.024374	1	4241	4241		25.574	0	1	832780			83885	2575	58518	58610	92890	92890					0.07517431851601941
VIDLIGDEYID	11	Unmodified	_VIDLIGDEYID_					0	0	0			REV__ENSG00000129636|ENST00000320640|ITFG1	REV__ENSG00000129636|ENST00000320640|ITFG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7280578613281	3	422.215093	1263.62345	-1.0173	-0.00042953	-1.1878	-0.00050153	-2.2052	-0.00093106	422.2144775877059	28.426	1.0346	28.426	28.151	29.186	0					29	24	3	0	0	0	0.024759	1	1681	1681		23.378	2.5408	1	74545	+		83886	23054	58519	58611	92891	92891					0.002182191670044631
VIDLIGDEYID	11	Unmodified	_VIDLIGDEYID_					0	0	0			REV__ENSG00000129636|ENST00000320640|ITFG1	REV__ENSG00000129636|ENST00000320640|ITFG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	422.215093	1263.62345	-0.08668	-3.6597E-05	-2.3018	-0.00097184	-2.3884	-0.0010084	422.21390800487063	28.197	0.50035	28.278	27.91	28.411	0.080811	-0.073786	-0.0011211	NaN	23.378	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42724	+		83887	23054	58519	58611							0.002182191670044631
VIDLVEVEV	9	Unmodified	_VIDLVEVEV_					0	0	0		ENST00000444527.2_1_8:56362086-56362449:-|nuORF	ENST00000444527.2_1_8:56362086-56362449:-|nuORF	ENST00000444527.2_1_8:56362086-56362449:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.7922668457031	2	507.789515	1013.56448	-0.29805	-0.00015134	4.1496	0.0021071	3.8516	0.0019558	507.79172186684144	44.696	0.51543	44.732	44.443	44.959	0.0369					23	14	2	0	0	0	0.024436	1	4187	4187		38.806	0	1	1049600			83888	14424	58520	58612	92892	92892					0.05823787663337043
VIDNENDWEPE	11	Unmodified	_VIDNENDWEPE_					0	0	0			REV__nc|ENSG00000070961|P20020-5|ATP2B1	REV__nc|ENSG00000070961|P20020-5|ATP2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.28216552734375	3	453.86149	1358.56264	-0.9686	-0.00043961	-2.4436	-0.0011091	-3.4122	-0.0015487	453.8602185580465	49.004	0.36563	49.079	48.913	49.279	0.074196					14	9	2	0	0	0	0.02477	1	4985	4985		22.562	6.6409	1	119930	+		83889	20442	58521	58613	92893	92893					-0.10229917883225426
VIDQKVYEI	9	Unmodified	_VIDQKVYEI_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000476955.5_1_22:38245435-38266306:+|nuORF;ENST00000406934.5_1_22:38246060-38259001:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.7667846679688	2	553.808239	1105.60193	-0.19346	-0.00010714	-0.57227	-0.00031693	-0.76573	-0.00042406	553.8076991675609	53.25	0.82444	53.25	52.974	53.799	0					62	22	4	0	0	0	0.02433	1	5752	5752		70.816	31.795	1	2929400			83890	2139	58522	58614	92894	92894					0.05334878928965736
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2666625976562	2	525.266739	1048.51892	-0.39295	-0.0002064	-0.010923	-5.7376E-06	-0.40387	-0.00021214	525.2665603985766	52.67	0.98614	52.543	52.118	53.104	-0.12705					71	22	5	0	0	0	0.16468	3	5473	5473;5483;5495		96.19	36.072	1	3057700			83891	4600	58523	58615	92895;92896;92897	92895					-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2662963867188	2	525.266739	1048.51892	0.50359	0.00026452	-0.72664	-0.00038168	-0.22305	-0.00011716	525.2662017612543	52.928	0.93335	52.67	52.365	53.298	-0.25838					57	23	4	0	0	0	0.021872	2	5514	5503;5514		148.04	83.836	1	2987600			83892	4600	58523	58615	92898;92899	92899					-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.267333984375	2	525.266739	1048.51892	0.036537	1.9192E-05	-0.70098	-0.0003682	-0.66444	-0.00034901	525.2661778026219	52.861	1.0117	52.671	52.308	53.32	-0.18982					49	25	3	0	0	0	0.067814	3	5482	5482;5493;5506		122.18	48.201	1	3134900			83893	4600	58523	58615	92900;92901;92902	92900					-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.266739	1048.51892	-0.93967	-0.00049358	2.5374	0.0013328	1.5977	0.00083922	525.26850351009	52.47	0.43787	52.47	52.273	52.711	0	-0.077272	0.0030361	NaN	148.04	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117050			83894	4600	58523	58615							-0.0033943779901619564
VIDQQNGLY	9	Unmodified	_VIDQQNGLY_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	525.266739	1048.51892	0.16216	8.5177E-05	1.5728	0.00082612	1.7349	0.0009113	525.7683936939293	52.614	0.43424	52.467	52.248	52.682	-0.14723	-0.080662	0.0020228	NaN	148.04	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92037			83895	4600	58523	58615							-0.0033943779901619564
VIDSAELQAY	10	Unmodified	_VIDSAELQAY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.7794799804688	2	554.779679	1107.5448	-0.30477	-0.00016908	-0.60134	-0.00033361	-0.90611	-0.00050269	554.7792114196827	62.363	0.51071	62.149	61.852	62.362	-0.21375					36	12	4	0	0	0	0.024725	3	7020	7009;7020;7033		159.28	89.648	1	6359200			83896	10867	58524	58616	92903;92904;92905	92904					-0.00466588347421748
VIDSAELQAY	10	Unmodified	_VIDSAELQAY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.779296875	2	554.779679	1107.5448	-0.84943	-0.00047124	0.37819	0.00020981	-0.47123	-0.00026143	554.7797741895047	62.372	0.57866	62.194	61.804	62.383	-0.17782					50	14	5	0	0	0	0.00015698	4	7013	7004;7013;7025;7038		199.7	116.06	1	6127300			83897	10867	58524	58616	92906;92907;92908;92909	92907					-0.00466588347421748
VIDSAELQAY	10	Unmodified	_VIDSAELQAY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.7796020507812	2	554.779679	1107.5448	-0.55659	-0.00030879	-0.3419	-0.00018968	-0.89849	-0.00049846	554.7793928531919	62.503	0.57645	62.245	61.897	62.473	-0.25824					41	14	4	0	0	0	0.0081025	3	7020	7010;7020;7032		172.25	95.474	1	5698000			83898	10867	58524	58616	92910;92911;92912	92911					-0.00466588347421748
VIDTIDWN	8	Unmodified	_VIDTIDWN_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.75799560546875	2	488.242732	974.470912	-0.80999	-0.00039547	1.9131	0.00093408	1.1032	0.00053861	488.24363746774856	43.636	0.47055	43.491	43.205	43.675	-0.14471					16	12	2	0	0	0	0.027866	1	4036	4036		55.504	4.1688	1	85337			83899	10921	58525	58617	92913	92913					-0.017345117190984638
VIDVQRLRVVQ	11	Unmodified	_VIDVQRLRVVQ_					0	0	0		ENSG00000170667|ENST00000465829|RASA4B;ENST00000523568.1_7:102228019-102246337:-|nuORF;nc|ENSG00000105808|O43374-2|RASA4;ENSG00000105808|ENST00000262940|RASA4	ENSG00000170667|ENST00000465829|RASA4B	ENSG00000170667|ENST00000465829|RASA4B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.25933837890625	3	442.273499	1323.79867	-0.19748	-8.7342E-05	0.67185	0.00029714	0.47436	0.0002098	442.2738010806173	27.275	0.39548	27.262	27.032	27.427	-0.012983					12	10	2	0	0	0	0.02477	1	1466	1466		12.433	9.2215	1	343570			83900	8066	58526	58618	92914	92914					0.14972103542572768
VIDYYDGV	8	Unmodified	_VIDYYDGV_					0	0	0		HCCS|p.G232V|1|0.25|ENSG00000004961|chrX:11121698-11121698|G/T|missense_variant	HCCS|p.G232V|1|0.25|ENSG00000004961|chrX:11121698-11121698|G/T|missense_variant	HCCS|p.G232V|1|0.25|ENSG00000004961|chrX:11121698-11121698|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.3106994628906	2	472.224008	942.433463	2.2093	0.0010433	-1.214	-0.00057329	0.99532	0.00047002	472.22333410590267	20.009	0.87393	20.076	19.637	20.511	0.066195					25	17	2	0	0	0	0.027866	1	449	449		29.842	0	1	42691			83901	17706	58527	58619	92915	92915					-0.04005602984705092
VIEAYQAF	8	Unmodified	_VIEAYQAF_					0	0	0			REV__ENSG00000116039|ENST00000234396|ATP6V1B1	REV__ENSG00000116039|ENST00000234396|ATP6V1B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.7953186035156	2	470.742368	939.470183	0.10381	4.8867E-05	-1.8597	-0.00087545	-1.7559	-0.00082659	470.7397150515688	42.462	0.33221	42.339	42.195	42.527	-0.12299					16	8	3	0	0	0	0.027866	1	3841	3841		35.201	0	1	78293	+		83902	22254	58528	58620	92916	92916					-0.001973063681475651
VIEFASTK	8	Unmodified	_VIEFASTK_					0	0	0		nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;nc|ENSG00000048028|Q96RU2-3|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.73809814453125	2	447.750193	893.485833	0.27801	0.00012448	0.52135	0.00023343	0.79936	0.00035791	447.7500542274391	40.925	0.84422	40.925	40.448	41.292	0					41	23	3	0	0	0	0.027866	1	3700	3700		29.15	0	1	318560			83903	1113	58529	58621	92917	92917					0.03482980148896786
VIEVRSNPRPV	11	Unmodified	_VIEVRSNPRPV_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3689575195312	2	633.369861	1264.72517	0.31837	0.00020164	-1.5571	-0.00098625	-1.2388	-0.0007846	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	1.0624	1	11974	11974		21.686	1.6553	1	3419700	+		83904	28522	58530	58622	92918	92918					0.1033955510006308
VIEVRSNPRPV	11	Unmodified	_VIEVRSNPRPV_					0	0	0			REV__nc|ENSG00000198929|O75052-3|NOS1AP	REV__nc|ENSG00000198929|O75052-3|NOS1AP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.369873046875	2	633.369861	1264.72517	-2.2268	-0.0014104	1.1831	0.00074936	-1.0437	-0.00066102	633.3704900800258	93.216	1.2663	93.076	92.131	93.397	-0.13996					96	29	4	0	0	0	1.0017	1	11481	11481		36.447	2.5251	1	1660400	+		83905	28522	58530	58622	92919	92919					0.1033955510006308
VIFATIKTVN	10	Unmodified	_VIFATIKTVN_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.33154296875	2	553.334424	1104.6543	-0.4027	-0.00022283	-3.2671	-0.0018078	-3.6698	-0.0020306	553.332456575769	95.559	1.4151	95.408	95.012	96.427	-0.15186					99	32	5	0	0	0	1.1266	1	11750	11750		29.17	5.6474	1	3966700			83906	9960	58531	58623	92920	92920					0.10615462062582992
VIFDEVHYL	9	Unmodified	_VIFDEVHYL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.7947387695312	2	567.795132	1133.57571	-0.27412	-0.00015564	0.1589	9.022E-05	-0.11522	-6.5423E-05	567.7950485188554	72.398	0.93962	72.398	72.054	72.994	0					64	22	4	0	0	0	0.021668	2	8819	8806;8819		148.21	0	1	1691600			83907	9038	58532	58624	92921;92922	92922					0.014266097574591186
VIFDEVHYL	9	Unmodified	_VIFDEVHYL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.794677734375	2	567.795132	1133.57571	0.51505	0.00029244	-0.76764	-0.00043587	-0.2526	-0.00014342	567.7945607541056	72.744	1.0546	72.462	72.139	73.194	-0.28124					62	25	4	0	0	0	0.08613	3	8837	8825;8837;8849		115.46	0	1	1492800			83908	9038	58532	58624	92923;92924;92925	92924					0.014266097574591186
VIFDEVHYL	9	Unmodified	_VIFDEVHYL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.79443359375	2	567.795132	1133.57571	-0.16246	-9.2245E-05	-0.11496	-6.5277E-05	-0.27743	-0.00015752	567.7949440820323	72.466	1.086	72.476	72.131	73.217	0.0097733					62	24	4	0	0	0	0.10076	3	8754	8741;8754;8766		110.34	0	1	1694300			83909	9038	58532	58624	92926;92927;92928	92927					0.014266097574591186
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7868957519531	2	502.786776	1003.559	0.23814	0.00011974	0.014367	7.2236E-06	0.25251	0.00012696	502.7866401451937	87.485	0.61125	87.485	87.194	87.805	0					25	14	2	0	0	0	0.31247	1	11004	11004		73.975	16.163	1	1485000			83910	1103	58533	58625	92929	92929					0.0573610887150835
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.78717041015625	2	502.786776	1003.559	0.96523	0.0004853	-0.70743	-0.00035568	0.2578	0.00012962	502.7862797747855	87.49	0.89393	87.511	87.137	88.031	0.021263					32	21	2	0	0	0	0.4752	1	10922	10922		60.972	4.5381	1	1671500			83911	1103	58533	58625	92930	92930					0.0573610887150835
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	502.786776	1003.559	-0.0879	-4.4195E-05	0.91486	0.00045998	0.82696	0.00041578	502.78695581335796	87.503	0.58862	87.324	86.986	87.575	-0.17874	-0.090102	0.00097127	NaN	73.975	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374170			83912	1103	58533	58625							0.0573610887150835
VIFDLPTTV	9	Unmodified	_VIFDLPTTV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	502.786776	1003.559	-0.2623	-0.00013188	0.84008	0.00042238	0.57778	0.0002905	502.7870572839708	87.447	0.50711	87.31	87.038	87.545	-0.13734	-0.10385	0.00089607	NaN	73.975	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404100			83913	1103	58533	58625							0.0573610887150835
VIFFTEIN	8	Unmodified	_VIFFTEIN_					0	0	0			REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	REV__ADCY1|p.P854Lfs*27|1|0.06|ENSG00000164742|chr7:45703481-45703482|-/TGGA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7922668457031	2	491.765843	981.517133	-0.58416	-0.00028727	-2.4205	-0.0011903	-3.0046	-0.0014776	491.7645865232579	61.007	0.56204	61.078	60.714	61.276	0.071125					22	14	2	0	0	0	0.027866	1	6942	6942		40.573	6.4001	1	363980	+		83914	19071	58534	58626	92931	92931					0.025635531829948377
VIFHEPEA	8	Unmodified	_VIFHEPEA_					0	0	0		ENSG00000153823|ENST00000392055|PID1;nc|ENSG00000153823|Q7Z2X4-2|PID1;nc|ENSG00000153823|Q7Z2X4|PID1;ENST00000482518.6_1_2:229715274-230109633:-|nuORF	ENSG00000153823|ENST00000392055|PID1	ENSG00000153823|ENST00000392055|PID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.31072998046875	2	471.239993	940.465432	-0.29962	-0.00014119	-1.4646	-0.00069016	-1.7642	-0.00083136	471.2383128984458	34.299	0.59275	34.349	33.965	34.557	0.050255					29	14	3	0	0	0	0.027866	1	2490	2490		28.254	0	1	106650			83915	6361	58535	58627	92932	92932					-0.007181905109177933
VIFHNHLD	8	Unmodified	_VIFHNHLD_					0	0	0		nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	nc|ENSG00000198554|O75717-2|WDHD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.272705078125	2	497.758884	993.503215	0.19247	9.5803E-05	0.87085	0.00043347	1.0633	0.00052928	497.75919982182353	52.494	0.54843	52.586	52.24	52.788	0.091938					22	13	2	0	0	0	0.027866	1	5533	5533		25.45	0	1	260450			83916	10148	58536	58628	92933	92933					0.006203204745474977
VIFHPVFSV	9	Unmodified	_VIFHPVFSV_					0	0	0		ENST00000572915.6_1_17:2570288-2573571:+|nuORF;ENST00000609078.1_1_17:2569342-2573633:+|nuORF;nc|ENSG00000007168|P43034-2|PAFAH1B1;ENSG00000007168|ENST00000397195|PAFAH1B1	ENST00000572915.6_1_17:2570288-2573571:+|nuORF	ENST00000572915.6_1_17:2570288-2573571:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.771728515625	2	522.797478	1043.5804	-0.25403	-0.00013281	0.1717	8.9765E-05	-0.082327	-4.304E-05	522.7971466556797	72.261	0.5004	72.062	71.788	72.289	-0.1981					18	11	2	0	0	0	0.024325	1	8476	8476		31.955	0	1	198530			83917	808	58537	58629	92934	92934					0.060355386908895525
VIFIRHGL	8	Unmodified	_VIFIRHGL_					0	0	0		ENST00000563108.5_1_16:53528870-53534189:-|nuORF;ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP	ENST00000563108.5_1_16:53528870-53534189:-|nuORF	ENST00000563108.5_1_16:53528870-53534189:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.79736328125	2	477.797812	953.581071	-0.14445	-6.9017E-05	-0.66454	-0.00031752	-0.80899	-0.00038653	477.797220551232	96.255	2.049	96.099	95.794	97.843	-0.15646					71	46	2	0	0	0	1.0574	1	11890	11890		26.796	1.3459	1	721640			83918	7636	58538	58630	92935	92935					0.10242378130590168
VIFISYLF	8	Unmodified	_VIFISYLF_					0	0	0		ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29010009765625	2	501.288954	1000.56336	1.1341	0.00056849	1.7906	0.00089763	2.9247	0.0014661	501.2895170379871	98.251	1.1783	98.127	97.812	98.99	-0.12413					77	28	4	0	0	0	1.0472	1	12180	12180		29.842	1.5873	1	1580300			83919	8268	58539	58631	92936	92936					0.06309618085083457
VIFMFFVL	8	Unmodified	_VIFMFFVL_					0	0	0		ENSG00000135324|ENST00000257776|MRAP2	ENSG00000135324|ENST00000257776|MRAP2	ENSG00000135324|ENST00000257776|MRAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7677917480469	2	508.2879	1014.56125	0.80483	0.00040908	-2.9432	-0.001496	-2.1383	-0.0010869	508.28638751791294	59.527	0.56007	59.527	58.999	59.559	0					20	14	2	0	0	0	0.027866	1	6721	6721		33.493	8.989	1	151360			83920	4879	58540	58632	92937	92937					0.05454866075638165
VIFMLIFY	8	Unmodified	_VIFMLIFY_					0	0	0			REV__chr3:119176109-119186714|204|38.14|0.71|5.75|+|ENST00000479520|UPK1B,UPK1B	REV__chr3:119176109-119186714|204|38.14|0.71|5.75|+|ENST00000479520|UPK1B,UPK1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.796875	2	523.293182	1044.57181	0.019316	1.0108E-05	2.9845	0.0015618	3.0039	0.0015719	523.2947868914312	35.908	1.4191	35.692	35.31	36.729	-0.21661					102	37	5	0	0	0	0.027866	1	2820	2820		24.504	0	1	19574000	+		83921	19432	58541	58633	92938	92938					0.05130848730050275
VIFMMNSK	8	Unmodified	_VIFMMNSK_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2873840332031	2	485.248449	968.482345	-0.53936	-0.00026172	3.8204	0.0018538	3.281	0.0015921	485.25045138570573	23.068	1.1461	23.007	22.753	23.899	-0.060862					54	26	3	0	0	0	0.027866	1	874	874		37.028	10.232	1	131050			83922	2889	58542	58634	92939	92939					-0.0031572922096074763
VIFNREKL	8	Unmodified	_VIFNREKL_					0	0	0		ENSG00000165752|ENST00000298630|STK32C;nc|ENSG00000165752|Q86UX6-2|STK32C	ENSG00000165752|ENST00000298630|STK32C	ENSG00000165752|ENST00000298630|STK32C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8036193847656	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	0.99042	1	10609	10609		38.806	1.647	1	2572600			83923	7463	58543	58635	92940	92940					0.08902039576844345
VIFNVLRR	8	Unmodified	_VIFNVLRR_					0	0	0			REV__ENST00000409592.7_1_2:225761057-225796351:-|nuORF	REV__ENST00000409592.7_1_2:225761057-225796351:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.76959228515625	2	508.821818	1015.62908	-0.55441	-0.0002821	-0.71988	-0.00036629	-1.2743	-0.00064839	508.8213564078407	42.446	0.45231	42.214	42.042	42.494	-0.23186					24	11	3	0	0	0	0.027866	1	3805	3805		26.796	8.4717	1	641600	+		83924	31965	58544	58636	92941	92941					0.12189452050654381
VIFRILFNL	9	Unmodified	_VIFRILFNL_					0	0	0			REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.2906494140625	2	567.855327	1133.6961	-0.34061	-0.00019342	-0.96353	-0.00054714	-1.3041	-0.00074056	567.8551061852277	58.806	0.25152	58.893	58.741	58.993	0.08733					10	6	2	0	0	0	0.024487	1	6605	6605		40.573	7.7602	1	67598	+		83925	31097	58545	58637	92942	92942					0.1346006254175336
VIFRILFNL	9	Unmodified	_VIFRILFNL_					0	0	0			REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.855327	1133.6961	-0.28148	-0.00015984	0.36979	0.00020999	0.088308	5.0146E-05	567.8551585341619	59.08	0.43911	58.892	58.702	59.141	-0.18795	0.03059	0.00092854	NaN	68.485	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134140	+		83926	31097	58545	58637							0.1346006254175336
VIFRILFNL	9	Unmodified	_VIFRILFNL_					0	0	0			REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.855327	1133.6961	0.37326	0.00021196	-0.6905	-0.00039211	-0.31725	-0.00018015	567.8547472189799	58.952	0.24367	58.771	58.628	58.872	-0.18134	-0.091035	-0.00027564	NaN	68.485	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164900	+		83927	31097	58545	58637							0.1346006254175336
VIFRILFNL	9	Unmodified	_VIFRILFNL_					0	0	0			REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	REV__ENST00000369681.9_1_6:84603324-84618761:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	567.855327	1133.6961	0.56145	0.00031882	-0.63848	-0.00036256	-0.077026	-4.374E-05	567.8547994917665	59.132	0.35587	58.891	58.661	59.017	-0.24165	0.029146	-0.00021656	NaN	68.485	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129370	+		83928	31097	58545	58637							0.1346006254175336
VIFVFRLA	8	Unmodified	_VIFVFRLA_					0	0	0		ENSG00000243627|ENST00000450895|SMIM34	ENSG00000243627|ENST00000450895|SMIM34	ENSG00000243627|ENST00000450895|SMIM34	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2852478027344	2	482.802563	963.590573	0.022366	1.0798E-05	-4.4565	-0.0021516	-4.4342	-0.0021408	482.80016646356216	54.491	0.65731	54.34	53.984	54.641	-0.15036					42	18	3	0	0	0	0.027866	1	5953	5953		40.573	7.0796	1	1049700			83929	10809	58546	58638	92943	92943					0.10732146416125943
VIFVIFTLL	9	Unmodified	_VIFVIFTLL_					0	0	0		nc|ENSG00000205754|G3V0H7|SLCO1B7;nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7901000976562	2	532.841354	1063.66815	-0.39009	-0.00020786	-4.3961	-0.0023424	-4.7862	-0.0025503	532.8392630733839	64.159	0.18471	63.907	63.838	64.023	-0.25141					5	4	2	0	0	0	0.024517	1	7496	7496		35.201	0	1	51553			83930	18673	58547	58639	92944	92944					0.13886739561667127
VIFYLRDKV	9	Unmodified	_VIFYLRDKV_					0	0	0		nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1	nc|ENSG00000156709|O95831-3|AIFM1	nc|ENSG00000156709|O95831-3|AIFM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	576.3082885742188	2	576.842416	1151.67028	-0.25753	-0.00014855	-1.2554	-0.00072416	-1.5129	-0.00087272	577.3428525880003	73.352	0.58809	73.075	72.626	73.214	-0.2769					18	13	2	0	0	0	0.024541	1	8566	8566		17.365	0	1	92148			83931	6546	58548	58640	92945	92945					0.10051168299446545
VIGDRSLIV	9	Unmodified	_VIGDRSLIV_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2979736328125	2	486.297842	970.581131	-0.21435	-0.00010424	0.050583	2.4599E-05	-0.16376	-7.9639E-05	486.29779633204737	67.313	0.7653	67.313	66.841	67.606	0					47	18	4	0	0	0	0.31037	1	8039	8039		74.255	2.3776	1	2382400	+		83932	27262	58549	58641	92946	92946					0.09466333339946686
VIGEKTKSI	9	Unmodified	_VIGEKTKSI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79705810546875	2	487.797675	973.580796	-1.0216	-0.00049831	-0.23908	-0.00011662	-1.2606	-0.00061494	487.7974619641112	75.539	1.6042	75.539	75.155	76.759	0					110	41	4	0	0	0	0.72875	1	9300	9300		44.117	3.3386	1	8547400	+		83933	25017	58550	58642	92947	92947					0.0929491362007866
VIGEKTKSI	9	Unmodified	_VIGEKTKSI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7979736328125	2	487.797675	973.580796	-0.47015	-0.00022934	-0.66802	-0.00032586	-1.1382	-0.0005552	487.7972225991239	75.737	1.5239	75.492	75.191	76.715	-0.24455					98	39	4	0	0	0	0.59099	1	9300	9300		53.351	9.2347	1	9873000	+		83934	25017	58550	58642	92948	92948					0.0929491362007866
VIGPHELKA	9	Unmodified	_VIGPHELKA_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.2853088378906	2	482.284734	962.554916	0.45539	0.00021963	-0.73141	-0.00035275	-0.27602	-0.00013312	482.2843740070333	54.345	1.4847	54.443	54.114	55.598	0.098015					81	41	2	0	0	0	0.31247	2	5849	5849;5885		73.975	13.003	1	27421000	+		83935	19737	58551	58643	92949;92950	92949					0.07214064168454115
VIGPHELKA	9	Unmodified	_VIGPHELKA_					0	0	0			REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	REV__EIF2AK3|p.P1083Qfs*13|1|0.44|ENSG00000172071|chr2:88557841-88557841|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2848815917969	2	482.284734	962.554916	-0.12077	-5.8243E-05	-0.60003	-0.00028938	-0.72079	-0.00034763	482.28451687068633	54.696	1.6493	54.465	54.181	55.83	-0.23087					115	46	5	0	0	0	0.40179	1	5811	5811		65.803	2.4969	1	22178000	+		83936	19737	58551	58643	92951	92951					0.07214064168454115
VIGRQWSI	8	Unmodified	_VIGRQWSI_					0	0	0			REV__ENST00000332624.7_1_2:202264167-202265775:-|nuORF	REV__ENST00000332624.7_1_2:202264167-202265775:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7760009765625	2	479.777077	957.5396	0.17588	8.4383E-05	-0.28112	-0.00013488	-0.10524	-5.0493E-05	479.77652803261265	79.68	0.46397	79.68	79.447	79.911	0					25	10	3	0	0	0	0.46709	1	9894	9894		88.643	11.796	1	470370	+		83937	30494	58552	58644	92952	92952					0.05913197371273782
VIGSFKLW	8	Unmodified	_VIGSFKLW_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.2876281738281	2	475.278921	948.543289	-0.018584	-8.8327E-06	0.82573	0.00039245	0.80714	0.00038362	475.2795444223799	52.202	0.45458	52.018	51.778	52.233	-0.18404					19	11	2	0	0	0	0.027866	1	5365	5365		60.294	10.269	1	180450			83938	18387	58553	58645	92953	92953					0.06695867145140255
VIGSFKLW	8	Unmodified	_VIGSFKLW_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	475.278921	948.543289	0.87315	0.00041499	-5.2595	-0.0024997	-4.3863	-0.0020847	475.2762590567485	51.972	0.69503	51.972	51.736	52.431	0	0.010772	-0.0015438	NaN	60.294	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347870			83939	18387	58553	58645							0.06695867145140255
VIGSFKLW	8	Unmodified	_VIGSFKLW_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	475.278921	948.543289	0.26539	0.00012613	-4.8143	-0.0022881	-4.5489	-0.002162	475.27647630422587	52.08	0.5286	51.933	51.642	52.17	-0.14735	-0.028892	-0.0011207	NaN	60.294	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467330			83940	18387	58553	58645							0.06695867145140255
VIGSFKLW	8	Unmodified	_VIGSFKLW_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.278921	948.543289	-0.59934	-0.00028485	-3.8643	-0.0018366	-4.4636	-0.0021215	475.2769750980002	51.834	0.68455	51.923	51.716	52.401	0.088894	-0.038851	-0.0002176	NaN	60.294	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290050			83941	18387	58553	58645							0.06695867145140255
VIGSFKLW	8	Unmodified	_VIGSFKLW_					0	0	0		nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.278921	948.543289	-1.7685	-0.00084051	2.8301	0.0013451	1.0617	0.00050459	475.2803174582565	52.232	0.33137	51.963	51.831	52.162	-0.26903	0.0011209	0.0061458	NaN	60.294	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133310			83942	18387	58553	58645							0.06695867145140255
VIGSVVARAE	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VIGSVVARAE_					1	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENST00000487155.1_1_21:34882015-34883589:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7978515625	2	521.798206	1041.58186	-1.5505	-0.00080905	0.48639	0.0002538	-1.0641	-0.00055525	521.7982530916629	62.084	0.47951	62.084	61.796	62.275	0					34	13	4	0	0	0	0.56936	1	7215	7215		80.455	15.297	1	3989500			83943	6720	58554	58646	92954	92954					0.06273127989015848
VIGSVVARAE	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VIGSVVARAE_					1	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF;ENST00000487155.1_1_21:34882015-34883589:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7982177734375	2	521.798206	1041.58186	-0.89746	-0.00046829	-0.19661	-0.00010259	-1.0941	-0.00057088	521.797784192497	62.293	0.47356	62.053	61.791	62.264	-0.23926					41	13	5	0	0	0	0.56936	1	7214	7214		80.455	11.608	1	4598900			83944	6720	58554	58646	92955	92955					0.06273127989015848
VIGTRLHAAV	10	Unmodified	_VIGTRLHAAV_					0	0	0		ENSG00000215717|ENST00000338272|TMEM167B;ENST00000479160.1_1_1:109634321-109637118:+|nuORF	ENSG00000215717|ENST00000338272|TMEM167B	ENSG00000215717|ENST00000338272|TMEM167B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.7767944335938	2	518.816733	1035.61891	0.41385	0.00021471	-4.3927	-0.002279	-3.9788	-0.0020643	519.3150018761866	79.61	0.2079	79.391	79.244	79.452	-0.21923					7	4	2	0	0	0	0.03519	1	9528	9528		15.642	0	1	25694			83945	10592	58555	58647	92956	92956					0.10252844325395927
VIGVLPPL	8	Unmodified	_VIGVLPPL_					0	0	0		ENST00000585111.1_1_17:62502244-62502892:-|nuORF;ENST00000577922.5_1_17:62502244-62502687:-|nuORF;ENST00000584279.5_1_17:62502244-62502687:-|nuORF	ENST00000585111.1_1_17:62502244-62502892:-|nuORF	ENST00000585111.1_1_17:62502244-62502892:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.2328796386719	2	404.270564	806.526576	1.0217	0.00041303	2.8642	0.0011579	3.8859	0.0015709	404.2715746171025	84.523	0.37646	84.32	84.211	84.587	-0.20329					13	8	3	0	0	0	0.027866	1	10213	10213		16.705	6.5202	1	50587			83946	17124	58556	58648	92957	92957					0.115573662591828
VIGVTPPK	8	Unmodified	_VIGVTPPK_					0	0	0			REV__ENST00000565125.5_1_11:68658919-68659369:-|nuORF	REV__ENST00000565125.5_1_11:68658919-68659369:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	405.7593078613281	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.62	1	113.5	113	114	-0.12832								0	0	0	1.3698	1	13749	13749		5.0869	0	1		+		83947	35269	58557	58649	92958	92958					0.08871891736760062
VIHAHDLSGF	10	Unmodified	_VIHAHDLSGF_					0	0	0			REV__ERBB3|p.I763F|1|0.22|ENSG00000065361|chr12:56097057-56097057|A/T|missense_variant	REV__ERBB3|p.I763F|1|0.22|ENSG00000065361|chr12:56097057-56097057|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3035888671875	2	548.282723	1094.55089	-0.039077	-2.1425E-05	3.3907	0.0018591	3.3516	0.0018376	548.2853260203071	37.353	0.23291	37.16	37.076	37.309	-0.193					8	5	3	0	0	0	0.03519	1	2994	2994		40.573	0	1	51894	+		83948	36010	58558	58650	92959	92959					0.00739974674752375
VIHAWLII	8	Unmodified	_VIHAWLII_					0	0	0		PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant;nc|ENSG00000080815|P49768-6|PSEN1	PSEN1|p.W244Kfs*15|1|0.06|ENSG00000080815|chr14:73192824-73192825|-/AAAAAATTACACAGATT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2846374511719	2	482.802563	963.590573	-0.31147	-0.00015038	-4.3779	-0.0021137	-4.6894	-0.0022641	482.8003398337964	54.311	0.58176	54.311	54.01	54.591	0					43	16	4	0	0	0	0.027866	1	5977	5977		33.493	0	1	1104700			83949	19002;1695	58559	58651	92960	92960					0.10732146416137311
VIHGIYIP	8	Unmodified	_VIHGIYIP_					0	0	0			REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	REV__nc|ENSG00000151276|Q96QZ7-3|MAGI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2582702636719	2	456.271096	910.527639	-0.33603	-0.00015332	0.12812	5.8456E-05	-0.20791	-9.4864E-05	456.27075875497167	32.443	0.75491	32.455	32.063	32.818	0.011799					30	19	2	0	0	0	0.027866	1	2203	2203		43.626	0	1	213000	+		83950	24762	58560	58652	92961	92961					0.06879580628083204
VIHISDSIL	9	Unmodified	_VIHISDSIL_					0	0	0		ENST00000426052.6_1_3:170110523-170110649:+|nuORF	ENST00000426052.6_1_3:170110523-170110649:+|nuORF	ENST00000426052.6_1_3:170110523-170110649:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7896728515625	2	498.78985	995.565146	-0.10721	-5.3477E-05	0.40637	0.00020269	0.29916	0.00014922	498.7899003988223	70.097	1.8667	70.109	69.751	71.618	0.012421					99	48	3	0	0	0	0.36105	1	8423	8423		68.485	2.6815	1	8064700			83951	14079	58561	58653	92962	92962					0.06718627103043673
VIHLPQSVQ	9	Unmodified	_VIHLPQSVQ_					0	0	0		nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	nc|ENSG00000076944|Q15833-3|STXBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2743835449219	2	510.795466	1019.57638	-0.24551	-0.00012541	1.5726	0.00080328	1.3271	0.00067788	510.79373903771597	76.586	0.25887	76.417	76.266	76.525	-0.16854					9	5	3	0	0	0	0.024457	1	9069	9069		21.96	0	1	54426			83952	18085	58562	58654	92963	92963					0.06737449197191836
VIHVVDSPII	10	Unmodified	_VIHVVDSPII_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.7797241210938	2	546.326599	1090.63865	-0.2454	-0.00013407	0.41791	0.00022831	0.17251	9.4245E-05	546.3266344404881	73.866	1.2783	73.676	73.396	74.674	-0.19027					41	32	2	0	0	0	0.03519	1	8663	8663		38.806	1.647	1	940190			83953	6959	58563	58655	92964	92964					0.09695175545516577
VIHVVDSPII	10	Unmodified	_VIHVVDSPII_					0	0	0		nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	nc|ENSG00000162600|Q96E52-2|OMA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.326599	1090.63865	-0.25893	-0.00014146	0.70822	0.00038692	0.44929	0.00024546	546.8284224870779	74.021	0.13073	73.744	73.645	73.776	-0.2769	0.034187	0.00021987	NaN	38.806	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567240			83954	6959	58563	58655							0.09695175545516577
VIHVVHPDL	9	Unmodified	_VIHVVHPDL_					0	0	0		ENST00000261038.5_1_3:122564669-122591304:+|nuORF	ENST00000261038.5_1_3:122564669-122591304:+|nuORF	ENST00000261038.5_1_3:122564669-122591304:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.7994384765625	2	514.798009	1027.58147	-0.54969	-0.00028298	3.3492	0.0017241	2.7995	0.0014412	514.7996695574594	45.302	1.4969	45.203	44.868	46.365	-0.099445					97	41	5	0	0	0	0.44472	1	4308	4308		62.978	2.0065	1	15757000			83955	11458	58564	58656	92965	92965					0.06877753059779934
VIHVVHPDL	9	Unmodified	_VIHVVHPDL_					0	0	0		ENST00000261038.5_1_3:122564669-122591304:+|nuORF	ENST00000261038.5_1_3:122564669-122591304:+|nuORF	ENST00000261038.5_1_3:122564669-122591304:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	514.7999267578125	2	514.798009	1027.58147	-0.054432	-2.8021E-05	2.7115	0.0013959	2.6571	0.0013679	514.799356717267	45.461	1.1885	45.208	44.826	46.015	-0.25252					91	32	5	0	0	0	0.24299	3	4312	4312;4326;4339		83.287	5.5747	1	17317000			83956	11458	58564	58656	92966;92967;92968	92966					0.06877753059779934
VIIASIGLVC	10	Unmodified	_VIIASIGLVC_					0	0	0			REV__ENST00000495562.5_1_1:202910703-202913132:-|nuORF	REV__ENST00000495562.5_1_1:202910703-202913132:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.3014221191406	2	494.298996	986.583439	0.89614	0.00044296	2.2975	0.0011357	3.1936	0.0015786	494.3002378958665	96.132	3.036	96.134	95.524	98.56	0.0020752					189	70	6	0	0	0	1.1056	1	12178	12178		31.955	0	1	45891000	+		83957	25247	58565	58657	92969	92969					0.08961045753392227
VIICMMGAV	9	Unmodified	_VIICMMGAV_					0	0	0			REV__KIT|p.A755Pfs*10|1|0.21|ENSG00000157404|chr4:54731897-54731897|C/-|frameshift_variant	REV__KIT|p.A755Pfs*10|1|0.21|ENSG00000157404|chr4:54731897-54731897|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.76434326171875	2	468.739402	935.464252	0.59897	0.00028076	-0.31079	-0.00014568	0.28818	0.00013508	468.73957866778056	71.843	0.75837	71.843	71.453	72.211	0					33	19	2	0	0	0	0.024389	1	8724	8724		29.842	0	1	170290	+		83958	25128	58566	58658	92970	92970					-0.006061874673150669
VIIDQLPDL	9	Unmodified	_VIIDQLPDL_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68154039-68171824:+|nuORF;ENSG00000070018|ENST00000261349|LRP6;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L	ENSG00000162337|ENST00000294304|LRP5;ENSG00000070018|ENST00000261349|LRP6;nc|ENSG00000290796|A4QPB2-2|LRP5L	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2965698242188	2	513.297507	1024.58046	-0.35487	-0.00018215	-0.61879	-0.00031763	-0.97367	-0.00049978	513.296950543903	85.5	0.78635	85.442	85.063	85.849	-0.05761					42	18	3	0	0	0	0.077175	1	10693	10693		118.74	28.373	1	662650			83959	6926;1413;18829	58567	58659	92971	92971					0.0691549390023738
VIIDQLPDL	9	Unmodified	_VIIDQLPDL_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68154039-68171824:+|nuORF;ENSG00000070018|ENST00000261349|LRP6;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L	ENSG00000162337|ENST00000294304|LRP5;ENSG00000070018|ENST00000261349|LRP6;nc|ENSG00000290796|A4QPB2-2|LRP5L	ENSG00000070018|ENST00000261349|LRP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	513.297507	1024.58046	-1.0827	-0.00055576	0.15152	7.7774E-05	-0.93122	-0.00047799	513.2973174760236	85.474	0.57777	85.499	85.243	85.821	0.025536	0.028756	0.00026822	NaN	118.74	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692830			83960	6926;1413;18829	58567	58659							0.0691549390023738
VIIFILMID	9	Unmodified	_VIIFILMID_					0	0	0		LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|65|3|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|65|3|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|65|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2779541015625	2	538.824846	1075.63514	-1.1743	-0.00063275	2.6818	0.001445	1.5075	0.00081227	538.826238320507	45.73	0.51271	45.578	45.343	45.856	-0.15157					21	14	2	0	0	0	0.024443	1	4450	4450		19.36	0	1	227720			83961	17933	58568	58660	92972	92972					0.10034789447308867
VIIFILMID	9	Unmodified	_VIIFILMID_					0	0	0		LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|65|3|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|65|3|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|65|3|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	538.824846	1075.63514	-1.537	-0.00082815	3.75	0.0020206	2.213	0.0011924	538.8266867392908	46.24	0.37546	46.038	45.781	46.157	-0.20226	0.24062	0.0007239	NaN	35.201	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165280			83962	17933	58568	58660							0.10034789447308867
VIIIHPGKGT	10	Unmodified	_VIIIHPGKGT_					0	0	0		nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3	nc|ENSG00000079215|P43003-2|SLC1A3	nc|ENSG00000079215|P43003-2|SLC1A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.8193359375	2	517.821484	1033.62842	-1.1532	-0.00059714	-2.9121	-0.001508	-4.0653	-0.0021051	517.8198004944113	91.792	1.1119	91.792	91.425	92.537	0					81	26	5	0	0	0	1.0665	1	11651	11651		37.159	8.0096	1	1448700			83963	1654	58569	58661	92973	92973					0.1129461261095912
VIIIPTES	8	Unmodified	_VIIIPTES_					0	0	0			REV__ENSG00000270885|ENST00000603017|RASL10B	REV__ENSG00000270885|ENST00000603017|RASL10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2691955566406	2	436.260394	870.506234	0.22333	9.7429E-05	-2.9028	-0.0012664	-2.6795	-0.001169	436.25903485321936	23.777	0.83107	23.853	23.351	24.182	0.076241					50	18	4	0	0	0	0.027866	1	884	884		8.2313	4.2461	1	366870	+		83964	29164	58570	58662	92974	92974					0.06580150808702001
VIIKKKRY	8	Unmodified	_VIIKKKRY_					0	0	0			REV__ENST00000273258.3_1_3:69154031-69154163:+|nuORF	REV__ENST00000273258.3_1_3:69154031-69154163:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3140869140625	2	524.355494	1046.69644	-0.49997	-0.00026216	-1.2135	-0.00063628	-1.7134	-0.00089844	524.3550895211104	73.53	0.3307	73.259	73.09	73.421	-0.27126					12	8	2	0	0	0	0.027866	1	8947	8947		4.6817	0	1	86764	+		83965	29822	58571	58663	92975	92975					0.17495482261597317
VIIKRITVT	9	Unmodified	_VIIKRITVT_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8125	2	521.852784	1041.69102	-0.22453	-0.00011717	3.4599	0.0018056	3.2354	0.0016884	521.8546551777429	41.546	0.16936	41.423	41.294	41.464	-0.12317					7	4	2	0	0	0	0.024541	1	3715	3715		20.947	0.95016	1	49320	+		83966	32223	58572	58664	92976	92976					0.17183758679129824
VIILHTFAK	9	Unmodified	_VIILHTFAK_					0	0	0			REV__nc|ENSG00000172748|Q8TC21-3|ZNF596	REV__nc|ENSG00000172748|Q8TC21-3|ZNF596	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.308349609375	2	521.326402	1040.63825	-0.56981	-0.00029706	-3.8619	-0.0020133	-4.4317	-0.0023104	521.3242730816464	30.838	0.54218	30.85	30.499	31.041	0.011797					21	12	2	0	0	0	0.024541	1	2018	2018		18.324	0.95945	1	177270	+		83967	36943	58573	58665	92977	92977					0.11955800616306078
VIILIQPVSAN	11	Unmodified	_VIILIQPVSAN_					0	0	0			REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.858642578125	2	583.860806	1165.70706	-0.41859	-0.0002444	-2.9873	-0.0017442	-3.4059	-0.0019886	583.8588726706961	96.987	1.2388	96.995	96.575	97.813	0.0089111					82	27	5	0	0	0	1.0075	1	12333	12333		35.152	0.97948	1	1557300	+		83968	25934	58574	58666	92978	92978					0.13083420125371958
VIILIQPVSAN	11	Unmodified	_VIILIQPVSAN_					0	0	0			REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.85791015625	2	583.860806	1165.70706	-0.716	-0.00041804	-2.5967	-0.0015161	-3.3127	-0.0019342	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	1.0557	1	12082	12082		23.523	1.5628	1	1429300	+		83969	25934	58574	58666	92979	92979					0.13083420125371958
VIILITLIE	9	Unmodified	_VIILITLIE_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.8155517578125	2	513.844093	1025.67363	-0.89554	-0.00046017	0.4207	0.00021617	-0.47484	-0.00024399	513.8423103940682	44.775	0.24273	44.775	44.691	44.934	0					9	6	2	0	0	0	0.024386	1	4315	4315		33.516	10.473	1	68721			83970	9588	58575	58667	92980	92980					0.16182418353491812
VIILKMFW	8	Unmodified	_VIILKMFW_					0	0	0		ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.28515625	2	525.314449	1048.61435	-0.38161	-0.00020047	2.4934	0.0013098	2.1118	0.0011093	525.3155824403422	65.88	0.79739	65.628	65.437	66.234	-0.25112					34	19	3	0	0	0	0.027866	1	7591	7591		37.028	17.032	1	400530			83971	3471	58576	58668	92981	92981					0.09198243858304522
VIIVCKMLY	9	Unmodified	_VIIVCKMLY_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;ENSG00000103335|ENST00000301015|PIEZO1	nc|ENSG00000154864|Q9H5I5|PIEZO2;ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8316040039062	2	541.311049	1080.60755	-0.97525	-0.00052791	-1.6963	-0.00091823	-2.6716	-0.0014461	541.3099459389284	75.6	0.51024	75.355	75.037	75.547	-0.24455					15	13	2	0	0	0	0.024183	1	9257	9257		60.294	10.269	1	374520			83972	6441;2494	58577	58669	92982	92982					0.07046562915411414
VIKEVLKRA	9	Unmodified	_VIKEVLKRA_					0	0	0		ENSG00000120437|ENST00000367048|ACAT2;nc|ENSG00000120437|Q9BWD1-2|ACAT2	ENSG00000120437|ENST00000367048|ACAT2	ENSG00000120437|ENST00000367048|ACAT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.2952270507812	2	528.350409	1054.68626	-0.87322	-0.00046137	-0.17263	-9.1207E-05	-1.0458	-0.00055257	528.3503554091894	45.259	0.40756	45.11	44.974	45.381	-0.1488					17	11	2	0	0	0	0.024523	1	4357	4357		21.96	0	1	165530			83973	3813	58578	58670	92983	92983					0.1611087453638902
VIKEWGTGRD	10	Unmodified	_VIKEWGTGRD_					0	0	0		nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;PDXDC1-ATP2A1|1|fusion;PDXDC1-ATP2A1|2|fusion	nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000196296|O14983-3|ATP2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.8443603515625	2	580.806562	1159.59857	-0.25582	-0.00014858	0.88093	0.00051165	0.62511	0.00036307	580.8071063678248	100.81	0.81071	100.69	100.6	101.42	-0.12576					23	20	2	0	0	0	0.03519	1	12579	12579		19.997	6.2214	1	147240			83974	9848	58579	58671	92984	92984					0.02515628874948561
VIKGMRVL	8	Unmodified	_VIKGMRVL_					0	0	0		ENSG00000120063|ENST00000439174|GNA13	ENSG00000120063|ENST00000439174|GNA13	ENSG00000120063|ENST00000439174|GNA13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.75115966796875	2	458.294048	914.573543	-0.04623	-2.1187E-05	-3.1127	-0.0014265	-3.1589	-0.0014477	458.29249826512637	29.81	0.72054	29.661	29.459	30.18	-0.14952					29	16	2	0	0	0	0.027866	1	1858	1858		19.36	0	1	160250			83975	3791	58580	58672	92985	92985					0.11283902538662005
VIKGTRRLT	9	Unmodified	_VIKGTRRLT_					0	0	0			REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2999877929688	2	522.337833	1042.66111	0.68751	0.00035911	-0.69655	-0.00036384	-0.0090419	-4.7229E-06	522.3373946667784	18.202	0.34304	18.045	17.854	18.197	-0.15637					12	6	3	0	0	0	0.024447	1	292	292		8.6937	0	1	54855	+		83976	36477	58581	58673	92986	92986					0.14148819733782148
VIKKGKIV	8	Unmodified	_VIKKGKIV_					0	0	0		nc|ENSG00000125775|Q9H190-3|SDCBP2;ENSG00000125775|ENST00000360779|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	442.73516845703125	2	442.818213	883.621873	1.9428	0.0008603	-1.6252	-0.00071967	0.31757	0.00014062	442.8173073444371	23.295	0.30519	23.104	22.942	23.248	-0.19117					13	6	3	0	0	0	0.027866	1	897	897		21.702	6.0661	1	124140			83977	4138	58582	58674	92987	92987					0.17540719450221331
VIKKLMFAP	9	Unmodified	_VIKKLMFAP_					0	0	0			REV__nc|ENSG00000090487|Q9NZD8-2|SPG21	REV__nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.8228759765625	2	523.825181	1045.63581	0.44531	0.00023327	-4.4138	-0.002312	-3.9685	-0.0020788	523.8227315094858	18.79	0.59282	18.587	18.411	19.004	-0.20371					22	11	3	0	0	0	0.4855	1	333	333		60.294	4.7898	1	519710	+		83978	20876	58583	58675	92988	92988					0.1148162888700881
VIKKMSSV	8	Unmodified	_VIKKMSSV_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.745849609375	2	446.270238	890.525924	1.7508	0.00078135	-2.3342	-0.0010417	-0.58331	-0.00026031	446.2690146458362	24.858	1.0761	24.686	24.165	25.241	-0.17151					43	24	3	0	0	0	0.027866	1	1095	1095		38.806	0	1	159690	+		83979	24364	58584	58676	92989	92989					0.0762820354783571
VIKKQPLPP	9	Unmodified	_VIKKQPLPP_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.28924560546875	2	510.334227	1018.6539	0.3659	0.00018673	-0.12919	-6.5929E-05	0.23671	0.0001208	510.33404923516025	71.169	1.9171	71.169	70.656	72.573	0					77	48	3	0	0	0	0.024535	1	8657	8657		33.516	0	1	347980	+		83980	29189	58585	58677	92990	92990					0.14532087133352434
VIKLITSNL	9	Unmodified	_VIKLITSNL_					0	0	0			REV__ENST00000249442.10_1_2:177202345-177202405:+|nuORF	REV__ENST00000249442.10_1_2:177202345-177202405:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.30401611328125	2	500.823692	999.632832	0.59788	0.00029943	-1.2995	-0.00065082	-0.70161	-0.00035138	500.82286296256257	58.598	0.73385	58.598	58.266	58.999	0					48	19	3	0	0	0	0.024466	1	6669	6669		47.657	19.775	1	419300	+		83981	29490	58586	58678	92991	92991					0.13300077033841262
VIKLITSNL	9	Unmodified	_VIKLITSNL_					0	0	0			REV__ENST00000249442.10_1_2:177202345-177202405:+|nuORF	REV__ENST00000249442.10_1_2:177202345-177202405:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.30450439453125	2	500.823692	999.632832	0.21817	0.00010926	-0.68868	-0.00034491	-0.47051	-0.00023564	500.82322786037537	58.929	0.52624	58.747	58.505	59.032	-0.18133					19	12	2	0	0	0	0.024344	1	6484	6484		45.972	10.354	1	388530	+		83982	29490	58586	58678	92992	92992					0.13300077033841262
VIKLNLNKL	9	Unmodified	_VIKLNLNKL_					0	0	0			REV__ENST00000303469.6_1_1:169762846-169762909:-|nuORF	REV__ENST00000303469.6_1_1:169762846-169762909:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.32861328125	2	527.852784	1053.69102	0.083389	4.4017E-05	-0.16207	-8.5548E-05	-0.078679	-4.1531E-05	527.8526022761538	77.101	0.92145	77.114	76.939	77.86	0.013496					39	21	3	0	0	0	0.024412	1	9508	9508		50.025	0	1	577460	+		83983	30097	58587	58679	92993	92993					0.1663175867913651
VIKNINTIS	9	Unmodified	_VIKNINTIS_					0	0	0		ENSG00000234511|ENST00000593851|C5orf58	ENSG00000234511|ENST00000593851|C5orf58	ENSG00000234511|ENST00000593851|C5orf58	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.30291748046875	2	501.303124	1000.5917	-0.26398	-0.00013233	-0.29325	-0.00014701	-0.55722	-0.00027934	501.3029012958998	25.517	0.70069	25.346	24.997	25.698	-0.17078					35	16	3	0	0	0	0.67687	1	1229	1229		47.657	0	1	1839800			83984	10721	58588	58680	92994	92994					0.09142315994370165
VIKNKAHPK	9	Unmodified	_VIKNKAHPK_					0	0	0		ENSG00000115145|ENST00000263904|STAM2;ENST00000465460.5_1_2:153001287-153006696:-|nuORF;nc|ENSG00000115145|O75886-2|STAM2;ENST00000463854.5_1_2:152988626-153032156:-|nuORF;ENST00000482997.5_1_2:152982712-153032156:-|nuORF	ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7996215820312	2	517.827101	1033.63965	-0.48166	-0.00024942	1.0708	0.00055449	0.58913	0.00030507	518.3285187749169	104.84	0.16912	104.71	104.6	104.77	-0.13099					6	4	2	0	0	0	0.024541	1	13062	13062		23.042	12.177	1	48338			83985	3412	58589	58681	92995	92995					0.12417434705071173
VIKPQIKF	8	Unmodified	_VIKPQIKF_					0	0	0			REV__ENST00000521804.1_1_8:142264369-142264606:-|nuORF	REV__ENST00000521804.1_1_8:142264369-142264606:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.8135070800781	2	486.81567	971.616788	-0.94213	-0.00045864	-3.9413	-0.0019187	-4.8834	-0.0023773	486.8137603404704	21.599	0.96792	21.386	21.118	22.086	-0.2128					63	19	5	0	0	0	0.88442	1	683	683		52.299	1.1065	1	3573300	+		83986	34326	58590	58682	92996	92996					0.12984415587607145
VIKRACII	8	Unmodified	_VIKRACII_					0	0	0			REV__ENSG00000120563|ENST00000649382|LYZL1	REV__ENSG00000120563|ENST00000649382|LYZL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.7508850097656	2	458.294048	914.573543	-0.82688	-0.00037895	-2.142	-0.00098166	-2.9689	-0.0013606	458.29286240327554	29.799	0.8034	29.626	29.406	30.209	-0.17258					33	18	2	0	0	0	0.027866	1	1847	1847		40.573	7.057	1	181650	+		83987	22541	58591	58683	92997	92997					0.11283902538662005
VIKRLISVL	9	Unmodified	_VIKRLISVL_					0	0	0		ENSG00000112339|ENST00000367837|HBS1L;nc|ENSG00000112339|Q9Y450-4|HBS1L;ENST00000527005.5_1_6:135286419-135303731:-|nuORF	ENSG00000112339|ENST00000367837|HBS1L	ENSG00000112339|ENST00000367837|HBS1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.766357421875	2	520.863152	1039.71175	-1.1563	-0.00060229	-0.21054	-0.00010966	-1.3669	-0.00071195	520.8637206766874	47.463	0.1585	47.522	47.457	47.615	0.059097					5	4	2	0	0	0	0.024209	1	4702	4702		56.721	0	1	85470			83988	3205	58592	58684	92998	92998					0.19348349058782333
VIKSLPMPM	9	Unmodified	_VIKSLPMPM_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|329|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|329|3|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|329|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	508.287574	1014.56059	0.56742	0.00028841	-1.0795	-0.00054868	-0.51205	-0.00026027	508.28731519746134	59.73	0.36822	59.53	59.209	59.577	-0.20016					14	9	2	0	0	0	0.024294	1	6762	6762		55.504	11.878	1	212700			83989	17882	58593	58685	92999	92999					0.053897033642783754
VIKSNALFLL	10	Unmodified	_VIKSNALFLL_					0	0	0			REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	560.3473510742188	2	559.352617	1116.69068	0.57238	0.00032016	4.0009	0.0022379	4.5733	0.0025581	559.3550010909189	106.02	0.23093	106.02	105.87	106.1	0					14	10	2	0	0	0	0.03519	1	13616	13616		47.657	13.485	1	66672	+		83990	37085	58594	58686	93000	93000					0.1370033895927918
VIKSNALFLL	10	Unmodified	_VIKSNALFLL_					0	0	0			REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3492431640625	2	559.352617	1116.69068	0.072466	4.0534E-05	4.2294	0.0023657	4.3018	0.0024062	559.3548289363215	106.09	0.46116	106.09	105.81	106.27	0.00014496					28	17	2	0	0	0	0.03519	1	13522	13522		34.173	0	1	274750	+		83991	37085	58594	58686	93001	93001					0.1370033895927918
VIKSRYQTL	9	Unmodified	_VIKSRYQTL_					0	0	0		ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF	ENSG00000182628|ENST00000330137|SKA2	ENSG00000182628|ENST00000330137|SKA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	554.3292236328125	2	554.329673	1106.64479	-0.11573	-6.4155E-05	-0.10433	-5.7831E-05	-0.22006	-0.00012199	554.3294656592068	32.389	0.83807	32.152	31.867	32.705	-0.23666					52	19	4	0	0	0	0.077175	3	2222	2222;2233;2245		118.74	33.828	1	1937500			83992	9149	58595	58687	93002;93003;93004	93002					0.09573693777042536
VIKSRYQTL	9	Unmodified	_VIKSRYQTL_					0	0	0		ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF	ENSG00000182628|ENST00000330137|SKA2	ENSG00000182628|ENST00000330137|SKA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.3292236328125	2	554.329673	1106.64479	0.39593	0.00021947	-0.55952	-0.00031016	-0.16359	-9.0682E-05	554.3292160609645	32.464	0.96358	32.271	31.899	32.863	-0.19261					55	22	4	0	0	0	0.14024	2	2226	2226;2238		101.6	42.819	1	1720200			83993	9149	58595	58687	93005;93006	93005					0.09573693777042536
VIKSRYQTL	9	Unmodified	_VIKSRYQTL_					0	0	0		ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF	ENSG00000182628|ENST00000330137|SKA2	ENSG00000182628|ENST00000330137|SKA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	554.3292236328125	2	554.329673	1106.64479	-0.42286	-0.0002344	0.16628	9.2174E-05	-0.25658	-0.00014223	554.3296426372566	32.381	0.93892	32.224	31.948	32.886	-0.15772					52	22	4	0	0	0	0.11727	2	2202	2202;2213		106.68	40.254	1	2197000			83994	9149	58595	58687	93007;93008	93007					0.09573693777042536
VIKTSTRQVS	10	Unmodified	_VIKTSTRQVS_					0	0	0		ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENST00000528362.1_1_11:47446139-47447800:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.7791748046875	2	559.830037	1117.64552	-0.73336	-0.00041055	4.4898	0.0025135	3.7565	0.002103	559.8320305192099	60.495	0.44482	60.241	59.977	60.421	-0.25373					15	10	3	0	0	0	0.03519	1	6705	6705		24.519	12.312	1	101490			83995	16179	58596	58688	93009	93009					0.09140488426078264
VIKTYFQV	8	Unmodified	_VIKTYFQV_					0	0	0		ENST00000279907.11_2_12:100451948-100451981:-|nuORF	ENST00000279907.11_2_12:100451948-100451981:-|nuORF	ENST00000279907.11_2_12:100451948-100451981:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.8323059082031	2	499.289485	996.564418	-0.92873	-0.0004637	-3.3507	-0.001673	-4.2794	-0.0021367	499.28778886720244	44.633	0.31769	44.534	44.354	44.672	-0.099445					12	7	2	0	0	0	0.027866	1	4168	4168		44.117	0	1	80550			83996	11709	58597	58689	93010	93010					0.06599832453991894
VILAALQQ	8	Unmodified	_VILAALQQ_					0	0	0			REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.1900634765625	2	428.268553	854.522553	1.7271	0.00073967	-0.82968	-0.00035532	0.89744	0.00038434	428.26771809676904	24.952	0.6884	24.78	24.471	25.159	-0.17151					26	15	3	0	0	0	0.027866	1	1139	1139		42.474	8.9589	1	180340	+		83997	21282	58598	58690	93011	93011					0.0894727676545699
VILADQGTY	9	Unmodified	_VILADQGTY_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220417726-220421339:-|nuORF	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.2576904296875	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	0.67308	1	13112	13112		47.916	0	1	4976900			83998	4006	58599	58691	93012	93012					0.012100613149982564
VILADYKGVSL	11	Unmodified	_VILADYKGVSL_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3428344726562	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	1.0465	1	11902	11902		26.063	0.48933	1	12648000			83999	4010	58600	58692	93013	93013					0.09415427371436635
VILADYKGVSL	11	Unmodified	_VILADYKGVSL_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3435668945312	2	589.344989	1176.67542	-1.1102	-0.00065427	-2.5095	-0.001479	-3.6197	-0.0021332	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	0.99689	2	11526	11493;11526		37.508	4.6958	1	4794700			84000	4010	58600	58692	93014;93015	93015					0.09415427371436635
VILADYKGVSL	11	Unmodified	_VILADYKGVSL_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3430786132812	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	0.94988	2	11806	11781;11806		47.96	3.6114	1	13724000			84001	4010	58600	58692	93016;93017	93017					0.09415427371436635
VILADYKGVSL	11	Unmodified	_VILADYKGVSL_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3429565429688	2	589.344989	1176.67542	-1.6034	-0.00094497	-2.0205	-0.0011907	-3.6239	-0.0021357	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0392	1	11186	11186		28.081	3.5623	1	5827400			84002	4010	58600	58692	93018	93018					0.09415427371436635
VILADYKGVSL	11	Unmodified	_VILADYKGVSL_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3427124023438	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.0075	1	11306	11306		35.152	3.6222	1	15816000			84003	4010	58600	58692	93019	93019					0.09415427371436635
VILADYKGVSL	11	Unmodified	_VILADYKGVSL_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.343505859375	2	589.344989	1176.67542	-0.80911	-0.00047685	-2.3196	-0.001367	-3.1287	-0.0018439	589.3434865746038	94.967	0.64822	94.829	94.506	95.155	-0.13779					49	14	4	0	0	0	1.0075	1	11702	11702		35.152	0	1	1636700			84004	4010	58600	58692	93020	93020					0.09415427371436635
VILADYKGVSL	11	Unmodified	_VILADYKGVSL_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3432006835938	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	0.9728	1	11556	11556		42.864	6.4175	1	17343000			84005	4010	58600	58692	93021	93021					0.09415427371436635
VILDLPLVI	9	Unmodified	_VILDLPLVI_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.8304443359375	2	497.830986	993.647419	0.63692	0.00031708	-0.17385	-8.6546E-05	0.46307	0.00023053	497.83050855377445	105.3	1.056	105.3	104.95	106.01	0					70	32	3	0	0	0	0.15889	2	13526	13513;13526		97.473	17.533	1	1020000			84006	10971	58601	58693	93022;93023	93023					0.15034149181985867
VILDLPLVI	9	Unmodified	_VILDLPLVI_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.8315124511719	2	497.830986	993.647419	0.20834	0.00010372	0.097029	4.8304E-05	0.30537	0.00015202	497.830747809974	105.34	0.85092	105.33	105.05	105.9	-0.0015945					58	28	3	0	0	0	0.29104	1	13446	13446		76.847	16.553	1	975990			84007	10971	58601	58693	93024	93024					0.15034149181985867
VILGYQSSL	9	Unmodified	_VILGYQSSL_					0	0	0			REV__ENSG00000163982|ENST00000296358|OTOP1	REV__ENSG00000163982|ENST00000296358|OTOP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.274658203125	2	490.276575	978.538597	-0.90452	-0.00044346	-2.6219	-0.0012855	-3.5264	-0.0017289	490.2750858074762	75.536	1.0746	75.536	75.194	76.268	0					90	28	4	0	0	0	0.033448	3	9286	9253;9286;9313		138.83	39.451	1	10852000	+		84008	25666	58602	58694	93025;93026;93027	93026					0.04846938211710494
VILGYQSSL	9	Unmodified	_VILGYQSSL_					0	0	0			REV__ENSG00000163982|ENST00000296358|OTOP1	REV__ENSG00000163982|ENST00000296358|OTOP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.276575	978.538597	-0.83327	-0.00040853	-2.1663	-0.0010621	-2.9996	-0.0014706	490.2753314100696	75.795	0.65692	75.522	75.267	75.924	-0.27266	0.0068107	0.001	NaN	138.83	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360940	+		84009	25666	58602	58694							0.04846938211710494
VILGYQSSL	9	Unmodified	_VILGYQSSL_					0	0	0			REV__ENSG00000163982|ENST00000296358|OTOP1	REV__ENSG00000163982|ENST00000296358|OTOP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.276575	978.538597	-0.099253	-4.8661E-05	-2.6449	-0.0012967	-2.7441	-0.0013454	490.2750522457989	75.755	0.6198	75.496	75.24	75.86	-0.25866	-0.01885	0.00053077	NaN	138.83	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424940	+		84010	25666	58602	58694							0.04846938211710494
VILGYQSSL	9	Unmodified	_VILGYQSSL_					0	0	0			REV__ENSG00000163982|ENST00000296358|OTOP1	REV__ENSG00000163982|ENST00000296358|OTOP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.276575	978.538597	0.3783	0.00018547	-2.6081	-0.0012787	-2.2298	-0.0010932	490.27479697056685	75.624	0.57478	75.449	75.234	75.809	-0.17548	-0.066197	0.00056681	NaN	138.83	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400980	+		84011	25666	58602	58694							0.04846938211710494
VILHIGKC	8	Unmodified	_VILHIGKC_					0	0	0		ARC|p.Q30H|1|0.17|ENSG00000198576|chr8:142614182-142614182|C/G|missense_variant	ARC|p.Q30H|1|0.17|ENSG00000198576|chr8:142614182-142614182|C/G|missense_variant	ARC|p.Q30H|1|0.17|ENSG00000198576|chr8:142614182-142614182|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7513122558594	2	441.765123	881.515694	0.41526	0.00018345	-0.26169	-0.00011561	0.15357	6.7842E-05	441.764828235029	24.81	0.27187	24.888	24.777	25.049	0.078346					7	5	2	0	0	0	0.027866	1	1070	1070		31.579	0	1	51358			84012	112	58603	58695	93028	93028					0.07019640613248157
VILHLRTH	8	Unmodified	_VILHLRTH_					0	0	0		ENSG00000144792|ENST00000322734|ZNF660	ENSG00000144792|ENST00000322734|ZNF660	ENSG00000144792|ENST00000322734|ZNF660	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.77398681640625	2	494.806168	987.597784	-0.62957	-0.00031151	-1.9704	-0.00097496	-2.6	-0.0012865	494.80379966993047	21.053	0.14843	21.053	20.949	21.097	0					4	2	2	0	0	0	0.027866	1	601	601		19.36	11.67	1	5569.2			84013	5767	58604	58696	93029	93029					0.10348879016555657
VILHLTVLL	9	Unmodified	_VILHLTVLL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.8444519042969	2	510.844428	1019.6743	-0.0052629	-2.6885E-06	-0.86397	-0.00044136	-0.86923	-0.00044404	510.84398698266796	76.001	1.8188	75.826	75.154	76.973	-0.17548					158	44	5	0	0	0	0.22754	1	9045	9045		85.359	14.064	1	28789000			84014	6329	58605	58697	93030	93030					0.16525257793159653
VILHSPLTSGM	11	Unmodified	_VILHSPLTSGM_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	576.822265625	2	577.815541	1153.61653	-0.61951	-0.00035796	-3.0059	-0.0017368	-3.6254	-0.0020948	577.8137401136095	66.615	0.61368	66.645	66.463	67.077	0.030106					21	14	2	0	0	0	0.024735	1	7845	7845		19.997	7.0376	1	654450			84015	2836	58606	58698	93031	93031					0.04586627805451826
VILHSPLTSGM	11	Unmodified	_VILHSPLTSGM_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.815541	1153.61653	-1.1187	-0.00064642	-1.9199	-0.0011094	-3.0387	-0.0017558	577.8143153130238	66.527	0.40707	66.527	66.434	66.841	0	-0.08069	0.00075108	NaN	14.137	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	809670			84016	2836	58606	58698							0.04586627805451826
VILHSPLTSGM	11	Unmodified	_VILHSPLTSGM_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	577.815541	1153.61653	-0.64626	-0.00037342	-2.4754	-0.0014303	-3.1216	-0.0018037	577.8138770650439	66.932	0.61926	66.65	66.456	67.075	-0.28148	0.042797	0.00010921	NaN	14.137	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824480			84017	2836	58606	58698							0.04586627805451826
VILINKADLLT	11	Unmodified	_VILINKADLLT_					0	0	0		ENSG00000041802|ENST00000265245|LSG1;LSG1|p.Q563Rfs*4|1|0.16|ENSG00000041802|chr3:194644682-194644682|T/-|frameshift_variant	ENSG00000041802|ENST00000265245|LSG1	ENSG00000041802|ENST00000265245|LSG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.8876953125	3	404.923585	1211.74892	0.21378	8.6566E-05	-1.8794	-0.000761	-1.6656	-0.00067443	404.9225870737715	22.535	0.4178	22.333	22.097	22.515	-0.20199					16	8	2	0	0	0	0.024757	1	796	796		10.998	2.1989	1	83459			84018	1072	58607	58699	93032	93032					0.15151975813887475
VILKVGPK	8	Unmodified	_VILKVGPK_					0	0	0			REV__ENST00000355295.4_1_9:100193224-100193323:+|nuORF	REV__ENST00000355295.4_1_9:100193224-100193323:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7135925292969	2	427.297114	852.579674	-0.86101	-0.00036791	1.1296	0.0004827	0.26864	0.00011479	427.2974506852617	31.42	0.37253	31.42	31.257	31.63	0					14	8	2	0	0	0	0.027866	1	2096	2096		12.959	5.2689	1	73041	+		84019	30772	58608	58700	93033	93033					0.14748744041855844
VILKVGPK	8	Unmodified	_VILKVGPK_					0	0	0			REV__ENST00000355295.4_1_9:100193224-100193323:+|nuORF	REV__ENST00000355295.4_1_9:100193224-100193323:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	427.297114	852.579674	-0.03562	-1.522E-05	1.0776	0.00046044	1.0419	0.00044522	427.29787247858224	31.329	0.33706	31.144	31.023	31.36	-0.18503	-0.1822	0.00045734	NaN	12.959	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75428	+		84020	30772	58608	58700							0.14748744041855844
VILKVGPK	8	Unmodified	_VILKVGPK_					0	0	0			REV__ENST00000355295.4_1_9:100193224-100193323:+|nuORF	REV__ENST00000355295.4_1_9:100193224-100193323:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.297114	852.579674	-0.049269	-2.1053E-05	1.5545	0.00066423	1.5052	0.00064318	427.2977984638164	31.459	0.29559	31.307	31.161	31.456	-0.15231	-0.019179	0.00086492	NaN	12.959	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52833	+		84021	30772	58608	58700							0.14748744041855844
VILLFCDW	8	Unmodified	_VILLFCDW_					0	0	0		ENST00000486831.5_1_3:138189538-138191915:+|nuORF	ENST00000486831.5_1_3:138189538-138191915:+|nuORF	ENST00000486831.5_1_3:138189538-138191915:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.30572509765625	2	504.764789	1007.51502	-0.36673	-0.00018511	-3.3237	-0.0016777	-3.6904	-0.0018628	505.26474879876514	69.552	0.47363	69.567	69.28	69.754	0.015129					20	11	2	0	0	0	0.027866	1	8309	8309		60.404	15.873	1	240590			84022	15353	58609	58701	93034	93034					0.011568011735221262
VILLLVSF	8	Unmodified	_VILLLVSF_					0	0	0		ENST00000357992.8_1_1:205578424-205578586:-|nuORF	ENST00000357992.8_1_1:205578424-205578586:-|nuORF	ENST00000357992.8_1_1:205578424-205578586:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.2539367675781	2	452.299322	902.584091	-0.77362	-0.00034991	-3.468	-0.0015686	-4.2416	-0.0019185	452.2972901669707	20.493	0.33309	20.493	20.323	20.656	0					12	6	2	0	0	0	0.027866	1	557	557		28.254	14.479	1	12981			84023	12706	58610	58702	93035	93035					0.12890208464762054
VILLQYVSE	9	Unmodified	_VILLQYVSE_					0	0	0			REV__ENST00000372827.7_1_1:40224173-40224701:-|nuORF	REV__ENST00000372827.7_1_1:40224173-40224701:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.3056030273438	2	532.305332	1062.59611	0.79499	0.00042318	-1.005	-0.00053495	-0.20998	-0.00011178	532.3045992059642	63.101	1.1874	63.156	62.76	63.947	0.054104					86	31	5	0	0	0	0.31247	1	7272	7272		73.975	8.5094	1	7723800	+		84024	31217	58611	58703	93036	93036					0.06731780417271693
VILLTLVAI	9	Unmodified	_VILLTLVAI_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.8338317871094	2	477.833529	953.652505	1.2397	0.00059239	-0.82252	-0.00039303	0.41722	0.00019936	477.83300080283107	105.72	1.0572	105.72	105.41	106.46	0					78	37	4	0	0	0	0.88411	1	13575	13575		33.516	0	1	749940			84025	2563	58612	58704	93037	93037					0.17382453044604063
VILLVLENS	9	Unmodified	_VILLVLENS_					0	0	0			REV__ENST00000340648.5_1_21:45114371-45114962:+|nuORF	REV__ENST00000340648.5_1_21:45114371-45114962:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.3190002441406	2	500.307875	998.601197	1.1359	0.00056831	-1.0107	-0.00050568	0.12518	6.2629E-05	500.3068386132666	96.727	0.96738	96.727	96.312	97.28	-3.0518E-05					40	21	3	0	0	0	0.024487	1	12258	12258		24.203	0	1	239230	+		84026	30621	58613	58705	93038	93038					0.10184084279887884
VILNLSGSH	9	Unmodified	_VILNLSGSH_					0	0	0			REV__ENST00000540200.5_1_17:26674994-26675081:-|nuORF	REV__ENST00000540200.5_1_17:26674994-26675081:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7551574707031	2	470.266542	938.51853	0.45753	0.00021516	-0.28357	-0.00013336	0.17395	8.1805E-05	470.26618028756394	37.06	0.77209	37.092	36.678	37.45	0.032269					41	19	3	0	0	0	0.024541	1	2989	2989		24.203	7.7296	1	473870	+		84027	34743	58614	58706	93039	93039					0.04681187271773979
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A;ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.8009948730469	2	503.800217	1005.58588	0.068719	3.4621E-05	0.021123	1.0642E-05	0.089841	4.5262E-05	503.8000685189278	58.04	1.1041	58.04	57.719	58.823	0					75	29	4	0	0	0	0.43973	1	6549	6549		63.306	3.0123	1	8770800			84028	8502	58615	58707	93040	93040					0.08331217482714237
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A;ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.80029296875	2	503.800217	1005.58588	-0.36472	-0.00018375	0.50026	0.00025203	0.13554	6.8287E-05	503.80030953178107	57.933	0.98797	58.024	57.683	58.671	0.091217					70	26	4	0	0	0	0.29104	1	6460	6460		76.847	0.072494	1	6780700			84029	8502	58615	58707	93041	93041					0.08331217482714237
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A;ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.8000183105469	2	503.800217	1005.58588	-0.046787	-2.3571E-05	0.33259	0.00016756	0.28581	0.00014399	503.800246150847	58.247	0.79987	58.069	57.795	58.595	-0.17775					41	19	3	0	0	0	0.096521	3	6401	6380;6389;6401		111.65	18.453	1	3531500			84030	8502	58615	58707	93042;93043;93044	93044					0.08331217482714237
VILPTVHEV	9	Unmodified	_VILPTVHEV_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A;ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7991027832031	2	503.800217	1005.58588	-0.13951	-7.0286E-05	0.56388	0.00028408	0.42437	0.0002138	503.80035086169596	58.261	1.1021	58.071	57.599	58.701	-0.19018					47	27	2	0	0	0	0.096521	1	6400	6400		111.65	15.601	1	3241400			84031	8502	58615	58707	93045	93045					0.08331217482714237
VILQAKCKGY	10	Unmodified	_VILQAKCKGY_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	562.2927856445312	2	561.820627	1121.6267	0.15418	8.6622E-05	-0.0023431	-1.3164E-06	0.15184	8.5305E-05	561.8206723030306	82.117	1.2903	81.929	81.424	82.714	-0.18838					43	29	2	0	0	0	0.03519	1	9957	9957		37.159	0	1	225850			84032	7065	58616	58708	93046	93046					0.07075235530692225
VILRGVLGT	9	Unmodified	_VILRGVLGT_					0	0	0		ENST00000333017.6_1_2:99863168-99871557:-|nuORF	ENST00000333017.6_1_2:99863168-99871557:-|nuORF	ENST00000333017.6_1_2:99863168-99871557:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.7691345214844	2	464.302927	926.591301	-0.10026	-4.6549E-05	0.08594	3.9902E-05	-0.014316	-6.647E-06	464.30287428359736	67.465	0.95352	67.177	66.832	67.785	-0.28834					43	23	3	0	0	0	0.024466	1	7976	7976		7.1934	0	1	426200			84033	12364	58617	58709	93047	93047					0.12506941065203137
VILSLILHL	9	Unmodified	_VILSLILHL_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.8441467285156	2	510.844428	1019.6743	0.059948	3.0624E-05	-1.0024	-0.00051207	-0.94246	-0.00048145	510.8439425160303	76.098	5.1728	76.109	75.471	80.644	0.011642					256	126	5	0	0	0	0.52323	1	9410	9410		57.811	4.4598	1	54455000			84034	3273	58618	58710	93048	93048					0.1652525779318239
VILSPIFAF	9	Unmodified	_VILSPIFAF_					0	0	0			REV__ENST00000263168.3_1_1:113213397-113213451:+|nuORF	REV__ENST00000263168.3_1_1:113213397-113213451:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.8006896972656	2	503.802229	1005.5899	0.068718	3.4621E-05	-3.9713	-0.0020007	-3.9025	-0.0019661	503.8000685189278	58.04	1.1041	58.04	57.719	58.823	0					75	29	4	0	0	0	0.26797	2	6575	6563;6575		79.939	8.5613	1	8770800	+		84035	29679	58619	58711	93049;93050	93050					0.08733306976409949
VILSPIFAF	9	Unmodified	_VILSPIFAF_					0	0	0			REV__ENST00000263168.3_1_1:113213397-113213451:+|nuORF	REV__ENST00000263168.3_1_1:113213397-113213451:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.8005065917969	2	503.802229	1005.5899	-0.88638	-0.00044656	-3.0964	-0.00156	-3.9828	-0.0020065	503.8005509346189	58.337	0.98093	58.152	57.814	58.795	-0.1853					66	26	3	0	0	0	0.10362	2	6577	6553;6577		109.7	6.8311	1	6742800	+		84036	29679	58619	58711	93051;93052	93052					0.08733306976409949
VILTGDHTI	9	Unmodified	_VILTGDHTI_					0	0	0		ENSG00000181499|ENST00000321252|OR6T1;OR6T1|p.D191Tfs*5|1|0.22|ENSG00000181499|chr11:123943268-123943268|C/-|frameshift_variant	ENSG00000181499|ENST00000321252|OR6T1	ENSG00000181499|ENST00000321252|OR6T1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7777404785156	2	484.7742	967.533846	-1.3726	-0.00066539	-4.1314	-0.0020028	-5.504	-0.0026682	484.77187850106213	29.44	0.20005	29.44	29.37	29.57	0					6	4	2	0	0	0	0.024466	1	1800	1800		25.45	0	1	102890			84037	9047	58620	58712	93053	93053					0.04878054068944948
VILTGGKVKP	10	Unmodified	_VILTGGKVKP_					0	0	0		ENST00000377524.7_1_10:17737239-17738814:+|nuORF	ENST00000377524.7_1_10:17737239-17738814:+|nuORF	ENST00000377524.7_1_10:17737239-17738814:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2969665527344	2	506.331685	1010.64882	-0.27855	-0.00014104	0.17637	8.9303E-05	-0.10218	-5.1736E-05	506.33160703033053	57.999	0.50175	58.091	57.908	58.409	0.091217					20	13	2	0	0	0	0.03519	1	6513	6513		15.642	0	1	348890			84038	13210	58621	58713	93054	93054					0.14391783270752967
VILTLVPVK	9	Unmodified	_VILTLVPVK_					0	0	0		ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2874755859375	2	491.338978	980.663404	-0.41887	-0.0002058	-0.36236	-0.00017804	-0.78122	-0.00038385	491.33861542754954	75.612	1.1074	75.367	74.997	76.104	-0.24455					59	29	3	0	0	0	0.024381	1	9322	9322		45.952	0	1	962510			84039	7099	58622	58714	93055	93055					0.17229855418895568
VILTLVPVK	9	Unmodified	_VILTLVPVK_					0	0	0		ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.338978	980.663404	-0.66051	-0.00032453	0.0030469	1.4971E-06	-0.65746	-0.00032304	491.3388406712549	75.48	0.76927	75.208	74.891	75.661	-0.27266	-0.10635	0.00053323	NaN	53.351	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486820			84040	7099	58622	58714							0.17229855418895568
VILTLVPVK	9	Unmodified	_VILTLVPVK_					0	0	0		ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	491.338978	980.663404	-0.1871	-9.1928E-05	-0.47935	-0.00023552	-0.66645	-0.00032745	491.3386219245533	75.496	0.76665	75.237	74.906	75.672	-0.25866	-0.076979	5.9187E-05	NaN	53.351	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337690			84041	7099	58622	58714							0.17229855418895568
VILTLVPVK	9	Unmodified	_VILTLVPVK_					0	0	0		ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	ENSG00000163530|ENST00000478945|DPPA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.338978	980.663404	0.37645	0.00018497	-1.0057	-0.00049414	-0.62925	-0.00030918	491.338330530743	75.393	0.76415	75.218	74.858	75.622	-0.17548	-0.096361	-0.00045805	NaN	53.351	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394260			84042	7099	58622	58714							0.17229855418895568
VILYTGPEL	9	Unmodified	_VILYTGPEL_					0	0	0			REV__nc|ENSG00000214711|A8MX76-2|CAPN14	REV__nc|ENSG00000214711|A8MX76-2|CAPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.7867736816406	2	502.786776	1003.559	0.24389	0.00012263	-0.071508	-3.5953E-05	0.17239	8.6674E-05	502.786606808958	87.475	1.0565	87.44	87.11	88.167	-0.035362					36	25	2	0	0	0	0.36105	1	10974	10974		68.485	5.1784	1	1495100	+		84043	28785	58623	58715	93056	93056					0.057361088715197184
VIMIDPKLRN	10	Unmodified	_VIMIDPKLRN_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-5|GNE	REV__nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.23046875	3	400.237398	1197.69036	0.70239	0.00028112	2.2434	0.00089791	2.9458	0.001179	400.23814411601444	21.737	0.47453	21.737	21.491	21.965	0					12	9	2	0	0	0	0.03519	1	721	721		19.263	0.73163	1	16784	+		84044	25283	58624	58716	93057	93057					0.09942595967754642
VIMLGNGDPE	10	Unmodified	_VIMLGNGDPE_					0	0	0			REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.30078125	2	522.755149	1043.49575	-0.9352	-0.00048888	2.2661	0.0011846	1.3309	0.00069571	522.7555052978612	80.015	0.67235	80.015	79.658	80.331	0					18	15	2	0	0	0	0.03519	1	9893	9893		37.159	6.8414	1	92171	+		84045	22538	58625	58717	93058	93058					-0.02426199908018134
VIMTIITLL	9	Unmodified	_VIMTIITLL_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|75|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|75|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|75|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.8232421875	2	508.824846	1015.63514	-0.40757	-0.00020738	-3.3028	-0.0016805	-3.7104	-0.0018879	508.82298845164956	101.75	1.2755	101.75	101.42	102.69	0					78	28	4	0	0	0	0.67308	1	13072	13072		47.916	0	1	1725400			84046	17814	58626	58718	93059	93059					0.12794789447298172
VIMTIITLL	9	Unmodified	_VIMTIITLL_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|75|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|75|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|75|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.8240966796875	2	508.824846	1015.63514	-0.19171	-9.7545E-05	-3.3083	-0.0016833	-3.5	-0.0017809	508.8230084269507	101.71	1.1201	101.72	101.29	102.41	0.0073471					70	25	4	0	0	0	0.70186	1	13033	13033		45.952	1.8352	1	1705800			84047	17814	58626	58718	93060	93060					0.12794789447298172
VIMVSAIGND	10	Unmodified	_VIMVSAIGND_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1;MBTPS1|p.Q444Afs*17|1|0.29|ENSG00000140943|chr16:84081866-84081867|-/T|frameshift_variant	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7666320800781	2	509.765517	1017.51648	-0.23072	-0.00011761	0.42409	0.00021619	0.19337	9.8572E-05	509.7652631587463	66.269	0.46307	65.987	65.75	66.213	-0.28149					23	11	3	0	0	0	0.03519	1	7819	7819		39.253	0	1	222560			84048	5453	58627	58719	93061	93061					0.008423904716437391
VINLCKGKF	9	Unmodified	_VINLCKGKF_					0	0	0		nc|ENSG00000153832|Q8NEA4-3|FBXO36;ENSG00000153832|ENST00000283946|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	nc|ENSG00000153832|Q8NEA4-3|FBXO36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7724304199219	2	511.296788	1020.57902	-0.56749	-0.00029015	4.3037	0.0022005	3.7362	0.0019103	511.29893083748675	31.953	0.39911	31.953	31.71	32.109	0					15	9	2	0	0	0	0.024436	1	2138	2138		30.504	0	1	67984			84049	6363	58628	58720	93062	93062					0.06955581330487348
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3432006835938	2	589.344989	1176.67542	-2.3876	-0.0014071	-1.1613	-0.0006844	-3.5489	-0.0020915	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	1.0292	4	11369	11322;11369;11474;11499		30.318	7.7381	1	4758600			84050	16527	58629	58721	93063;93064;93065;93066	93064					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3421020507812	2	589.344989	1176.67542	-1.6043	-0.00094547	-2.0723	-0.0012213	-3.6766	-0.0021668	589.3436219724761	92.615	3.4958	92.615	91.597	95.093	0					292	83	4	0	0	0	0.99553	5	11685	11661;11673;11685;11708;11756		37.812	12.237	1	12648000			84051	16527	58629	58721	93067;93068;93069;93070;93071	93069					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3432006835938	2	589.344989	1176.67542	-1.1102	-0.00065427	-2.5095	-0.001479	-3.6197	-0.0021332	589.3433662764764	90.777	2.4125	90.76	89.331	91.743	-0.016716					149	57	3	0	0	0	0.95882	3	11316	11303;11316;11341		45.972	14.442	1	4794700			84052	16527	58629	58721	93072;93073;93074	93073					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3426513671875	2	589.344989	1176.67542	-1.3447	-0.00079247	-2.3598	-0.0013908	-3.7045	-0.0021832	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	0.99553	4	11628	11628;11721;11880;11983		37.812	10.873	1	13724000			84053	16527	58629	58721	93075;93076;93077;93078	93075					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3428955078125	2	589.344989	1176.67542	-1.6034	-0.00094497	-2.0205	-0.0011907	-3.6239	-0.0021357	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	0.99553	3	10984	10984;11091;11114		37.812	6.2817	1	5827400			84054	16527	58629	58721	93079;93080;93081	93079					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.342529296875	2	589.344989	1176.67542	-1.9349	-0.0011403	-1.696	-0.00099954	-3.6309	-0.0021398	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	0.99553	1	11330	11330		37.812	7.4938	1	15816000			84055	16527	58629	58721	93082	93082					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.3429565429688	2	589.344989	1176.67542	-1.3212	-0.00077864	-2.2086	-0.0013016	-3.5297	-0.0020802	589.3435504964173	90.926	3.3089	90.801	88.492	91.801	-0.12512					234	78	4	0	0	0	0.99553	1	11116	11116		37.812	4.9991	1	5175100			84056	16527	58629	58721	93083	93083					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3426513671875	2	589.344989	1176.67542	-0.33817	-0.0001993	-3.3398	-0.0019683	-3.6779	-0.0021676	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0075	1	11150	11150		35.152	0.97948	1	6196800			84057	16527	58629	58721	93084	93084					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.344989	1176.67542	-0.57069	-0.00033633	-3.1557	-0.0018598	-3.7264	-0.0021962	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	0.99553	5	11508	11295;11317;11329;11508;11725		37.812	5.7985	1	17343000			84058	16527	58629	58721	93085;93086;93087;93088;93089	93088					0.09415427371436635
VINLWCFWF	9	Unmodified	_VINLWCFWF_					0	0	0			REV__ENST00000392350.7_1_2:190635870-190636011:-|nuORF	REV__ENST00000392350.7_1_2:190635870-190636011:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.9156494140625	3	409.872167	1226.59467	0.25934	0.0001063	-0.35446	-0.00014528	-0.095113	-3.8984E-05	409.8729424959129	32.232	0.68373	31.995	31.489	32.173	-0.23667					15	14	2	0	0	0	0.024381	1	2202	2202		45.952	8.4438	1	46100	+		84059	31603	58630	58722	93090	93090					-0.009561321524870436
VINNGNKGPPV	11	Unmodified	_VINNGNKGPPV_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	554.8075561523438	2	554.809105	1107.60366	-0.2987	-0.00016572	-0.87248	-0.00048406	-1.1712	-0.00064978	554.8086076818097	46.207	0.75617	45.946	45.593	46.35	-0.26118					49	15	4	0	0	0	0.99553	1	4452	4452		37.812	2.6595	1	9121300			84060	6618	58631	58723	93091	93091					0.0541593273756007
VINRSLVL	8	Unmodified	_VINRSLVL_					0	0	0		ENSG00000023697|ENST00000428559|DERA;ENST00000528821.5_1_12:16109876-16185684:+|nuORF	ENSG00000023697|ENST00000428559|DERA	ENSG00000023697|ENST00000428559|DERA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2953186035156	2	457.295102	912.575651	-0.1327	-6.0685E-05	0.13616	6.2265E-05	0.0034546	1.5798E-06	457.29508557830275	56.119	0.76651	55.963	55.554	56.321	-0.15601					62	20	4	0	0	0	0.56067	1	6195	6195		79.939	3.0926	1	6013900			84061	975	58632	58724	93092	93092					0.11586654548113984
VIPDDVLL	8	Unmodified	_VIPDDVLL_					0	0	0			REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.22625732421875	2	442.260394	882.506234	-1.188	-0.00052542	-1.6344	-0.00072283	-2.8224	-0.0012483	442.2594580923069	29.477	0.8712	29.477	29.186	30.057	0					37	21	3	0	0	0	0.027866	1	1868	1868		21.702	0	1	547560	+		84062	23973	58633	58725	93093	93093					0.06028150808708688
VIPDDVLL	8	Unmodified	_VIPDDVLL_					0	0	0			REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	REV__MDGA2|p.K322Sfs*7|1|0.21|ENSG00000139915|chr14:47096877-47096877|T/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	442.260394	882.506234	-0.3722	-0.00016461	-2.7292	-0.001207	-3.1014	-0.0013716	442.25900251651814	29.258	1.2043	29.337	29.054	30.258	0.078344	-0.10374	-0.0003377	NaN	21.702	43	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471700	+		84063	23973	58633	58725							0.06028150808708688
VIPNPSHF	8	Unmodified	_VIPNPSHF_					0	0	0			REV__nc|ENSG00000102908|O94916-2|NFAT5	REV__nc|ENSG00000102908|O94916-2|NFAT5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.26904296875	2	455.742702	909.470852	-0.18419	-8.3943E-05	-3.8783	-0.0017675	-4.0625	-0.0018515	455.74072849855645	27.754	0.49362	27.597	27.349	27.842	-0.15664					32	11	4	0	0	0	0.027866	1	1546	1546		26.796	20.061	1	744670	+		84064	21339	58634	58726	93094	93094					0.012495330715637465
VIPPTWIL	8	Unmodified	_VIPPTWIL_					0	0	0		nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF	nc|ENSG00000149091|Q13574-6|DGKZ	nc|ENSG00000149091|Q13574-6|DGKZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.30303955078125	2	469.789121	937.56369	0.24681	0.00011595	-4.3756	-0.0020556	-4.1288	-0.0019397	469.78708010433263	67.42	0.1646	67.42	67.285	67.45	0					6	3	2	0	0	0	0.027866	1	8035	8035		29.842	8.1392	1	70913			84065	6062	58635	58727	93095	93095					0.09241037804952157
VIPTIHVLDL	10	Unmodified	_VIPTIHVLDL_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3405151367188	2	560.342249	1118.66995	0.39378	0.00022065	-4.1525	-0.0023268	-3.7587	-0.0021062	560.3398073886877	101.24	2.0145	101.11	100.73	102.74	-0.13156					150	46	6	0	0	0	1.0271	2	12618	12618;12689		42.396	7.9657	1	14365000			84066	5390	58636	58728	93096;93097	93096					0.11535748579603933
VIPTIHVLDL	10	Unmodified	_VIPTIHVLDL_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3402709960938	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	1.089	1	12543	12543		34.173	5.023	1	13153000			84067	5390	58636	58728	93098	93098					0.11535748579603933
VIPTLADII	9	Unmodified	_VIPTLADII_					0	0	0		nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6;ENST00000497882.5_1_2:220079653-220079878:-|nuORF;ENST00000446716.5_1_2:220075515-220081188:-|nuORF	nc|ENSG00000115657|Q9NP58-4|ABCB6	nc|ENSG00000115657|Q9NP58-4|ABCB6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.7974548339844	2	477.797143	953.579734	0.73932	0.00035325	-0.22918	-0.0001095	0.51014	0.00024375	477.7968431092399	96.212	1.509	96.089	95.465	96.974	-0.12305					73	34	4	0	0	0	0.83071	1	11881	11881		37.159	5.2042	1	760830			84068	3478	58637	58729	93099	93099					0.10108699251179587
VIPVAQKTK	9	Unmodified	_VIPVAQKTK_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.26983642578125	2	492.316035	982.617516	-0.11239	-5.5329E-05	-3.1306	-0.0015413	-3.243	-0.0015966	492.31434296088406	25.606	0.33582	25.435	25.163	25.499	-0.17078					13	7	2	0	0	0	0.024535	1	1200	1200		18.324	0	1	77609	+		84069	21065	58638	58730	93100	93100					0.12551210236642873
VIPVRIHTIVI	11	Unmodified	_VIPVRIHTIVI_					0	0	0		ENSG00000151224|ENST00000372213|MAT1A	ENSG00000151224|ENST00000372213|MAT1A	ENSG00000151224|ENST00000372213|MAT1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	630.4149169921875	2	630.41354	1258.81253	-0.20101	-0.00012672	1.816	0.0011449	1.615	0.0010181	630.414584541208	106.04	1.3341	106.04	105.73	107.06	0.00015259					78	46	3	0	0	0	1.1017	1	13536	13536		10.866	0.6003	1	829630			84070	6187	58639	58731	93101	93101					0.1934738104164353
VIQAKARGT	9	Unmodified	_VIQAKARGT_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.28759765625	2	472.287808	942.561064	0.59467	0.00028086	-1.1095	-0.00052398	-0.51478	-0.00024312	472.28728237386264	94.224	2.3916	94.224	93.558	95.95	0					188	56	6	0	0	0	1.0148	1	12114	12114		17.365	0	1	51888000	+		84071	24611;36769	58640	58732	93102	93102					0.08748582399982752
VIQMRPDL	8	Unmodified	_VIQMRPDL_					0	0	0		nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF	nc|ENSG00000120251|P42262-4|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF	nc|ENSG00000120251|P42262-4|GRIA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2918395996094	2	486.27077	970.526987	-0.19584	-9.5234E-05	-2.369	-0.001152	-2.5648	-0.0012472	486.2694728111219	55.359	0.89107	55.208	54.929	55.82	-0.15036					58	24	3	0	0	0	0.027866	1	6125	6125		68.787	0	1	2447000			84072	3799;14963	58641	58733	93103	93103					0.04054417916722741
VIQRKRELW	9	Unmodified	_VIQRKRELW_					0	0	0		ENSG00000229833|ENST00000594797|PET100	ENSG00000229833|ENST00000594797|PET100	ENSG00000229833|ENST00000594797|PET100	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.9155578613281	3	409.915535	1226.72478	0.26192	0.00010737	-0.23307	-9.5539E-05	0.028853	1.1827E-05	409.9153156863466	32.104	0.64629	31.867	31.611	32.258	-0.23667					49	14	5	0	0	0	0.96906	1	2190	2190		26.693	0.62953	1	947570			84073	10684	58642	58734	93104	93104					0.12048180170882006
VIQRKRELW	9	Unmodified	_VIQRKRELW_					0	0	0		ENSG00000229833|ENST00000594797|PET100	ENSG00000229833|ENST00000594797|PET100	ENSG00000229833|ENST00000594797|PET100	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.9154357910156	3	409.915535	1226.72478	0.52808	0.00021647	-0.57313	-0.00023494	-0.045052	-1.8467E-05	409.9152633306445	32.131	1.0561	31.938	31.641	32.697	-0.19261					65	24	5	0	0	0	0.97455	1	2196	2196		25.574	1.3422	1	927910			84074	10684	58642	58734	93105	93105					0.12048180170882006
VIQVEYPLS	9	Unmodified	_VIQVEYPLS_					0	0	0		ENST00000512145.1_1_6:18237336-18256602:-|nuORF	ENST00000512145.1_1_6:18237336-18256602:-|nuORF	ENST00000512145.1_1_6:18237336-18256602:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2831420898438	2	524.289682	1046.56481	0.25589	0.00013416	2.1159	0.0011093	2.3717	0.0012435	524.2910198038102	71.832	1.3537	71.57	70.992	72.345	-0.262					90	32	4	0	0	0	0.29158	1	8388	8388		76.774	2.5191	1	28665000			84075	15854	58643	58735	93106	93106					0.04339207383191024
VIQYYLQGN	9	Unmodified	_VIQYYLQGN_					0	0	0			REV__ENSG00000079112|ENST00000027335|CDH17	REV__ENSG00000079112|ENST00000027335|CDH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.8555908203125	2	549.284931	1096.55531	0.16034	8.8073E-05	-1.5877	-0.00087212	-1.4274	-0.00078405	549.28376039423	79.799	0.33479	79.58	79.452	79.786	-0.21923					11	7	2	0	0	0	0.024487	1	9575	9575		31.955	11.008	1	86995	+		84076	20626	58644	58736	93107	93107					0.010894390976545765
VIRAAVAGF	9	Unmodified	_VIRAAVAGF_					0	0	0		ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	452.2428894042969	2	452.27417	902.533787	-0.10473	-4.7365E-05	2.4438	0.0011052	2.339	0.0010579	452.2757706913678	54.065	0.20358	53.819	53.717	53.92	-0.2453					14	6	3	0	0	0	0.024443	1	5691	5691		26.796	0	1	535660			84077	10482	58645	58737	93108	93108					0.07862098859607158
VIRAFPKN	8	Unmodified	_VIRAFPKN_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2948303222656	2	472.787444	943.560336	-1.1401	-0.00053902	-4.1463	-0.0019603	-5.2864	-0.0024993	472.7857142122537	34.228	0.23064	34.053	33.859	34.089	-0.17557					7	5	2	0	0	0	0.027866	1	2487	2487		8.2313	0	1	95535	+		84078	25129	58646	58738	93109	93109					0.08629787750930973
VIRFPYLDPP	10	Unmodified	_VIRFPYLDPP_					0	0	0		nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	nc|ENSG00000108406|Q8IX18-4|DHX40	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.8369750976562	2	608.839874	1215.66519	-1.5508	-0.00094421	-3.5804	-0.0021799	-5.1312	-0.0031241	608.8375823790956	109.85	0.61025	109.72	109.5	110.11	-0.13983					81	26	5	0	0	0	1.1329	1	13503	13503		27.882	4.3595	1	5424900			84079	2895	58647	58739	93110	93110					0.06598864436841723
VIRIPQLQN	9	Unmodified	_VIRIPQLQN_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8313598632812	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.59099	1	9293	9293		53.351	8.9743	1	94452000	+		84080	27181	58648	58740	93111	93111					0.10849113496919927
VIRLSSLNLT	10	Unmodified	_VIRLSSLNLT_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	559.2689819335938	2	558.342781	1114.67101	-0.13721	-7.6609E-05	0.01936	1.081E-05	-0.11785	-6.5799E-05	558.3424784900153	33.236	0.3955	33.036	32.813	33.209	-0.20019					11	9	2	0	0	0	0.03519	1	2347	2347		13.454	3.7484	1	82934			84081	3145	58649	58741	93112	93112					0.11825962948478264
VIRPILQQV	9	Unmodified	_VIRPILQQV_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.8214111328125	2	533.342584	1064.67061	-0.78677	-0.00041962	0.58461	0.0003118	-0.20216	-0.00010782	533.8440935247403	69.488	0.40156	69.503	69.352	69.754	0.015129					10	9	2	0	0	0	0.024541	1	8327	8327		18.324	6.1176	1	61558			84082	3041	58650	58742	93113	93113					0.1408658801931324
VIRREHGD	8	Unmodified	_VIRREHGD_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.27679443359375	2	491.264865	980.515176	0.095196	4.6766E-05	-2.3448	-0.0011519	-2.2496	-0.0011051	491.26396030789186	76.377	0.36039	76.389	76.128	76.488	0.011635					14	8	2	0	0	0	0.027866	1	9339	9339		31.955	15.482	1	79148			84083	2035	58651	58743	93114	93114					0.024139372177501173
VIRRERVPG	9	Unmodified	_VIRRERVPG_					0	0	0		ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.801025390625	2	541.333082	1080.65161	1.2165	0.00065852	-4.41	-0.0023873	-3.1935	-0.0017288	541.332004157533	18.844	0.24781	18.844	18.724	18.972	0					9	4	3	0	0	0	0.024541	1	341	341		23.042	15.849	1	12699			84084	15420	58652	58744	93115	93115					0.11451051448261751
VIRTSITDI	9	Unmodified	_VIRTSITDI_					0	0	0			REV__ENST00000474112.5_1_3:63850616-63884087:+|nuORF	REV__ENST00000474112.5_1_3:63850616-63884087:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.768798828125	2	509.300581	1016.58661	-0.61828	-0.00031489	-4.3624	-0.0022217	-4.9806	-0.0025366	509.79820912002924	23.218	0.46593	23.218	22.894	23.36	0					23	10	3	0	0	0	0.024323	1	852	852		53.351	0	1	98724	+		84085	33263	58653	58745	93116	93116					0.07898012131749965
VIRVNLSTF	9	Unmodified	_VIRVNLSTF_					0	0	0		FAM199X|p.D385Vfs*43|1|0.02|ENSG00000123575|chrX:104189764-104189765|-/TAGT|frameshift_variant	FAM199X|p.D385Vfs*43|1|0.02|ENSG00000123575|chrX:104189764-104189765|-/TAGT|frameshift_variant	FAM199X|p.D385Vfs*43|1|0.02|ENSG00000123575|chrX:104189764-104189765|-/TAGT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2676391601562	2	524.811116	1047.60768	-0.91861	-0.0004821	0.63732	0.00033447	-0.2813	-0.00014763	524.8112104574407	45.564	0.33828	45.564	45.375	45.714	0					13	9	2	0	0	0	0.024205	1	4409	4409		73.975	26.317	1	159750			84086	17634	58654	58746	93117	93117					0.08578022231267823
VIRVNLSTF	9	Unmodified	_VIRVNLSTF_					0	0	0		FAM199X|p.D385Vfs*43|1|0.02|ENSG00000123575|chrX:104189764-104189765|-/TAGT|frameshift_variant	FAM199X|p.D385Vfs*43|1|0.02|ENSG00000123575|chrX:104189764-104189765|-/TAGT|frameshift_variant	FAM199X|p.D385Vfs*43|1|0.02|ENSG00000123575|chrX:104189764-104189765|-/TAGT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2676391601562	2	524.811116	1047.60768	-0.13547	-7.1096E-05	0.95647	0.00050197	0.821	0.00043087	524.8114734903313	45.613	0.3071	45.657	45.444	45.751	0.04388					15	8	2	0	0	0	0.024205	1	4362	4362		63.306	20.91	1	137790			84087	17634	58654	58746	93118	93118					0.08578022231267823
VIRWALPLL	9	Unmodified	_VIRWALPLL_					0	0	0			REV__nc|ENSG00000112237|P24863-2|CCNC	REV__nc|ENSG00000112237|P24863-2|CCNC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8311767578125	2	540.850045	1079.68554	-1.649	-0.00089185	1.5223	0.00082334	-0.12668	-6.8513E-05	540.8508683678008	75.325	0.50369	75.325	75.155	75.659	0					28	13	3	0	0	0	0.024436	1	9232	9232		47.916	7.343	1	731120	+		84088	21982	58655	58747	93119	93119					0.1488807988730514
VISAMVSPVY	10	Unmodified	_VISAMVSPVY_					0	0	0		ENST00000550906.1_1_12:29614693-29617397:+|nuORF	ENST00000550906.1_1_12:29614693-29617397:+|nuORF	ENST00000550906.1_1_12:29614693-29617397:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.2716674804688	2	533.286085	1064.55762	0.025454	1.3574E-05	3.5834	0.001911	3.6089	0.0019246	533.2878572318963	50.299	0.59872	50.119	49.864	50.462	-0.18071					36	15	3	0	0	0	0.03519	1	5057	5057		34.173	7.3764	1	1660900			84089	16593	58656	58748	93120	93120					0.02792151511107477
VISDLLGFNL	10	Unmodified	_VISDLLGFNL_					0	0	0		nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2;nc|ENSG00000006576|Q8N3S3-4|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.8114013671875	2	545.810782	1089.60701	-0.96752	-0.00052808	0.91985	0.00050207	-0.047666	-2.6017E-05	545.8112395180657	91.515	1.3143	91.503	91.156	92.471	-0.012383					82	31	5	0	0	0	0.88896	1	11573	11573		54.776	0	1	4054900			84090	796	58657	58749	93121	93121					0.0657918279155183
VISILALSGLA	11	Unmodified	_VISILALSGLA_					0	0	0			REV__BTNL3|p.P138A|1|0.23|ENSG00000168903|chr5:180997227-180997227|C/G|missense_variant	REV__BTNL3|p.P138A|1|0.23|ENSG00000168903|chr5:180997227-180997227|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.8267822265625	2	528.8368	1055.65905	0.074751	3.9531E-05	-2.3391	-0.001237	-2.2643	-0.0011975	528.8349996233418	68.529	0.24136	68.286	68.149	68.39	-0.24277					6	5	2	0	0	0	0.024738	1	7931	7931		26.693	7.5894	1	103680	+		84091	19224	58658	58750	93122	93122					0.13344346205326474
VISKFRPK	8	Unmodified	_VISKFRPK_					0	0	0			REV__nc|ENSG00000154678|Q14123-2|PDE1C	REV__nc|ENSG00000154678|Q14123-2|PDE1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.79766845703125	2	487.810919	973.607286	-0.081012	-3.9518E-05	-1.6527	-0.0008062	-1.7337	-0.00084572	487.8094473572241	50.428	0.29338	50.277	50.13	50.423	-0.15084					14	8	3	0	0	0	0.027866	1	5269	5269		27.882	0	1	414010	+		84092	24970	58659	58751	93123	93123					0.11942647302078058
VISNRIQS	8	Unmodified	_VISNRIQS_					0	0	0			REV__nc|ENSG00000197857|P15621-2|ZNF44	REV__nc|ENSG00000197857|P15621-2|ZNF44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	459.2743835449219	2	458.764166	915.513779	0.049681	2.2792E-05	1.6737	0.00076783	1.7234	0.00079062	458.76592390512405	34.535	0.47368	34.311	34.106	34.58	-0.22412					15	11	2	0	0	0	0.027866	1	2540	2540		45.952	0	1	248900	+		84093	28353	58660	58752	93124	93124					0.052643031289903774
VISPGTRHLSE	11	Unmodified	_VISPGTRHLSE_					0	0	0		ENST00000337959.8_1_22:43267082-43267280:-|nuORF	ENST00000337959.8_1_22:43267082-43267280:-|nuORF	ENST00000337959.8_1_22:43267082-43267280:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	598.2591552734375	2	598.325119	1194.63569	-1.2366	-0.00073989	3.0124	0.0018024	1.7758	0.0010625	598.327246331221	64.84	0.27722	64.637	64.5	64.778	-0.20254					10	6	2	0	0	0	0.02478	1	7404	7404		56.434	24.904	1	116810			84094	12433	58661	58753	93125	93125					0.046153004207099
VISRAKVMV	9	Unmodified	_VISRAKVMV_					0	0	0		nc|ENSG00000171174|Q9H477-2|RBKS;ENSG00000171174|ENST00000302188|RBKS	nc|ENSG00000171174|Q9H477-2|RBKS	nc|ENSG00000171174|Q9H477-2|RBKS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.80352783203125	2	501.810062	1001.60557	-0.054233	-2.7214E-05	-1.1665	-0.00058537	-1.2207	-0.00061258	501.80921435824865	57.561	0.4528	57.561	57.227	57.68	0					15	11	2	0	0	0	0.024292	1	6453	6453		49.442	0	1	786590			84095	8123	58662	58754	93126	93126					0.10483270221823204
VISSAISTKS	10	Unmodified	_VISSAISTKS_					0	0	0		ENST00000412898.5_3_22:25006393-25007149:+|nuORF;ENST00000474191.6_1_22:25006393-25007149:+|nuORF	ENST00000412898.5_3_22:25006393-25007149:+|nuORF	ENST00000412898.5_3_22:25006393-25007149:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.2664489746094	2	496.784764	991.554975	1.3872	0.00068915	-0.34939	-0.00017357	1.0378	0.00051558	496.7842092551939	37.286	0.25875	37.286	37.12	37.379	0					11	6	2	0	0	0	0.03519	1	3002	3002		22.58	6.1065	1	151240			84096	13830	58663	58755	93127	93127					0.05886019377805951
VISSHGNPI	9	Unmodified	_VISSHGNPI_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	462.25103759765625	2	462.250892	922.48723	-0.76959	-0.00035574	0.17134	7.9202E-05	-0.59825	-0.00027654	462.25086787587975	30.319	1.0904	30.141	29.782	30.872	-0.17817					65	25	4	0	0	0	0.50848	1	1945	1945		58.782	6.4828	1	4652100			84097	4878	58664	58756	93128	93128					0.022886142376592034
VISSMDHAFHA	11	Unmodified	_VISSMDHAFHA_					0	0	0		ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	406.2558288574219	3	405.525607	1213.55499	-1.4029	-0.0005689	4.2249	0.0017133	2.822	0.0011444	405.5272815804911	40.53	0.4771	40.299	40.008	40.485	-0.23021					18	12	2	0	0	0	0.024749	1	3523	3523		10.104	0	1	246970			84098	714	58665	58757	93129	93129					-0.04324303893827164
VISVSYTHIL	10	Unmodified	_VISVSYTHIL_					0	0	0		OR2T2|p.S213F|1|0.07|ENSG00000196240|chr1:248453435-248453435|C/T|missense_variant;ENSG00000177151|ENST00000641268|OR2T35;ENSG00000196240|ENST00000641925|OR2T2	OR2T2|p.S213F|1|0.07|ENSG00000196240|chr1:248453435-248453435|C/T|missense_variant	OR2T2|p.S213F|1|0.07|ENSG00000196240|chr1:248453435-248453435|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.8034057617188	2	566.324057	1130.63356	-0.10582	-5.9927E-05	-0.63147	-0.00035762	-0.73729	-0.00041755	566.3239266085961	78.033	0.63687	77.877	77.617	78.254	-0.15591					29	13	3	0	0	0	0.03519	1	9327	9327		29.15	4.9468	1	161880			84099	8714	58666	58758	93130	93130					0.07346871682921119
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.78155517578125	2	494.78169	987.548827	0.95415	0.0004721	-0.86696	-0.00042896	0.087195	4.3142E-05	494.78105551311484	65.894	0.93118	65.894	65.292	66.224	0					79	24	5	0	0	0	0.013492	4	7830	7808;7818;7830;7843		177.71	80.234	1	11675000			84100	699	58667	58759	93131;93132;93133;93134	93133					0.054555011462980474
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.78204345703125	2	494.78169	987.548827	-0.088865	-4.3969E-05	0.29583	0.00014637	0.20697	0.0001024	494.78162046990974	66.228	0.89734	65.946	65.354	66.251	-0.28148					70	23	5	0	0	0	0.013492	4	7836	7824;7836;7848;7861		177.71	67.37	1	10437000			84101	699	58667	58759	93135;93136;93137;93138	93136					0.054555011462980474
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7818603515625	2	494.78169	987.548827	-0.062766	-3.1056E-05	0.26965	0.00013342	0.20688	0.00010236	494.7816042761908	65.879	0.88897	65.909	65.348	66.237	0.030098					71	23	5	0	0	0	0.016838	4	7740	7729;7740;7752;7766		204.1	93.759	1	10887000			84102	699	58667	58759	93139;93140;93141;93142	93140					0.054555011462980474
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7818908691406	2	494.78169	987.548827	-0.45208	-0.00022368	0.49338	0.00024412	0.041302	2.0436E-05	494.7818576381043	66.214	0.77209	65.969	65.65	66.422	-0.24517					63	19	5	0	0	0	0.11848	3	7576	7576;7589;7602		106.42	27.47	1	4224300			84103	699	58667	58759	93143;93144;93145	93143					0.054555011462980474
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.78169	987.548827	-0.49729	-0.00024605	0.42469	0.00021013	-0.072603	-3.5923E-05	494.7819549420201	66.247	0.74214	66.006	65.706	66.448	-0.24145	0.049081	1.2607E-05	NaN	177.71	56	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4005300			84104	699	58667	58759							0.054555011462980474
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ELF2|p.K531Rfs*18|1|0.33|ENSG00000109381|chr4:139059173-139059173|T/-|frameshift_variant;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.78169	987.548827	-0.57555	-0.00028477	0.49172	0.00024329	-0.083833	-4.1479E-05	494.782013292965	66.23	0.89586	66.017	65.629	66.525	-0.21327	0.060088	7.894E-05	NaN	177.71	64	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4265600			84105	699	58667	58759							0.054555011462980474
VITGIAIVLN	10	Unmodified	_VITGIAIVLN_					0	0	0			REV__ENSG00000011105|ENST00000011898|TSPAN9	REV__ENSG00000011105|ENST00000011898|TSPAN9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2746276855469	2	506.823692	1011.63283	-0.21528	-0.00010911	-1.3292	-0.00067367	-1.5445	-0.00078278	506.8231012518243	66.897	0.54839	66.921	66.643	67.191	0.023911					20	12	2	0	0	0	0.03519	1	7905	7905		74.255	1.3758	1	462420	+		84106	19917	58668	58760	93146	93146					0.1274807703383658
VITIFHGTI	9	Unmodified	_VITIFHGTI_					0	0	0		OR5D16|p.A249V|1|0.22|ENSG00000205029|chr11:55839497-55839497|C/T|missense_variant	OR5D16|p.A249V|1|0.22|ENSG00000205029|chr11:55839497-55839497|C/T|missense_variant	OR5D16|p.A249V|1|0.22|ENSG00000205029|chr11:55839497-55839497|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.30401611328125	2	500.794935	999.575317	0.6991	0.00035011	0.82104	0.00041117	1.5201	0.00076128	500.7919971757884	58.829	0.57653	58.829	58.531	59.108	0					35	15	4	0	0	0	0.024436	1	6669	6669		30.504	7.4612	1	192450			84107	18923	58669	58761	93147	93147					0.07551234828292763
VITLLEVVN	9	Unmodified	_VITLLEVVN_					0	0	0			REV__nc|ENSG00000290988|Q8N8C0-2|ZNF781	REV__nc|ENSG00000290988|Q8N8C0-2|ZNF781	MSMS	OPSCC_40_ClassI_Rep-3	6	500.3063049316406	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.163	1	94.015	93.515	94.515	-0.14771								0	0	0	0.59296	1	11584	11584		40.573	3.4135	1		+		84108	37236	58670	58762	93148	93148					0.10184084279899253
VITLLNSTD	9	Unmodified	_VITLLNSTD_					0	0	0		ENSG00000166603|ENST00000299766|MC4R	ENSG00000166603|ENST00000299766|MC4R	ENSG00000166603|ENST00000299766|MC4R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7586364746094	2	488.27149	974.528426	0.067684	3.3048E-05	-0.68309	-0.00033353	-0.6154	-0.00030048	488.2709537135295	43.138	0.65482	43.169	42.685	43.34	0.030823					33	17	3	0	0	0	0.023817	1	3982	3982		51.335	1.8939	1	869770			84109	7590	58671	58763	93149	93149					0.040143304864727725
VITLPHVIVE	10	Unmodified	_VITLPHVIVE_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000506426.1_1_4:184626141-184627956:+|nuORF;nc|ENSG00000168538|Q7Z392-2|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.3396606445312	2	560.342249	1118.66995	0.38121	0.00021361	-4.1736	-0.0023386	-3.7924	-0.002125	560.3397886527284	101.22	1.9311	101.09	100.74	102.68	-0.12576					152	46	6	0	0	0	1.0781	1	12665	12665		35.618	0	1	13153000			84110	7835	58672	58764	93150	93150					0.11535748579603933
VITMQYYL	8	Unmodified	_VITMQYYL_					0	0	0		SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.2881469726562	2	515.767529	1029.5205	-0.71903	-0.00037085	3.9004	0.0020117	3.1814	0.0016409	515.7693621184638	40.498	0.62046	40.349	40.078	40.698	-0.1497					38	16	3	0	0	0	0.027866	1	3473	3473		20.482	7.0278	1	2169400			84111	37890	58673	58765	93151	93151					0.006924799653461378
VITMQYYL	8	Unmodified	_VITMQYYL_					0	0	0		SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.767529	1029.5205	-0.1358	-7.0042E-05	3.2153	0.0016583	3.0794	0.0015883	515.7690188527381	40.716	0.70758	40.491	40.222	40.93	-0.225	0.041606	-0.00074129	NaN	26.796	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2002800			84112	37890	58673	58765							0.006924799653461378
VITMQYYL	8	Unmodified	_VITMQYYL_					0	0	0		SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	SLC38A8|p.V193M|1|0.19|ENSG00000166558|chr16:84031922-84031922|C/T|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.767529	1029.5205	-1.3015	-0.00067126	4.5293	0.0023361	3.2278	0.0016648	515.7696664241129	40.738	0.72993	40.508	40.273	41.003	-0.2303	0.058805	0.00061418	NaN	26.796	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1986000			84113	37890	58673	58765							0.006924799653461378
VITTDLLAR	9	Unmodified	_VITTDLLAR_					0	0	0		EIF4A2|p.L327V|1|0.1|ENSG00000156976|chr3:186787564-186787564|C/G|missense_variant	EIF4A2|p.L327V|1|0.1|ENSG00000156976|chr3:186787564-186787564|C/G|missense_variant	EIF4A2|p.L327V|1|0.1|ENSG00000156976|chr3:186787564-186787564|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.3048400878906	2	501.303124	1000.5917	-0.22471	-0.00011265	-0.34743	-0.00017417	-0.57214	-0.00028682	501.3028624991617	24.621	0.8645	24.447	24.129	24.993	-0.17484					49	19	4	0	0	0	0.82115	1	1117	1117		37.812	2.1932	1	2302800			84114	693	58674	58766	93152	93152					0.09142315994370165
VITTLAFEA	9	Unmodified	_VITTLAFEA_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2851257324219	2	482.771126	963.527698	-0.23591	-0.00011389	-0.48403	-0.00023368	-0.71994	-0.00034757	482.77033153646227	54.67	0.78807	54.67	54.428	55.216	0					39	22	3	0	0	0	0.024381	1	5989	5989		45.952	5.3793	1	578060	+		84115	20968	58675	58767	93153	93153					0.04447535837425676
VITVVSDSH	9	Unmodified	_VITVVSDSH_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5;OR4F4|p.V198Cfs*10|1|0.06|ENSG00000177693|chr15:101922468-101922468|C/-|frameshift_variant	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.3004455566406	2	478.756007	955.497461	-0.77312	-0.00037013	-3.8208	-0.0018292	-4.5939	-0.0021993	478.75270696144423	37.983	1.2197	37.901	37.603	38.823	-0.082512					79	33	4	0	0	0	0.022924	1	3085	3085		85.359	32.008	1	685520			84116	8661	58676	58768	93154	93154					0.01793177172248761
VIVCDKQR	8	Unmodified	_VIVCDKQR_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.76763916015625	2	480.768394	959.522236	0.31574	0.0001518	-4.1368	-0.0019889	-3.8211	-0.0018371	480.76628466762816	36.666	1.8832	36.666	35.531	37.414	0					109	50	3	0	0	0	0.78609	1	2889	2889		60.294	12.637	1	5909600	+		84117	21663	58677	58769	93155	93155					0.04085533773957195
VIVCDKQR	8	Unmodified	_VIVCDKQR_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7671813964844	2	480.768394	959.522236	-0.45381	-0.00021818	-3.4599	-0.0016634	-3.9137	-0.0018816	480.7666361479519	36.568	1.8582	36.525	35.326	37.184	-0.042454					108	49	3	0	0	0	0.68535	3	2888	2853;2888;2917		68.485	8.3664	1	5699900	+		84118	21663	58677	58769	93156;93157;93158	93157					0.04085533773957195
VIVCDKQR	8	Unmodified	_VIVCDKQR_					0	0	0			REV__ENSG00000107290|ENST00000224140|SETX	REV__ENSG00000107290|ENST00000224140|SETX	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7676696777344	2	480.768394	959.522236	-0.4943	-0.00023764	-3.9337	-0.0018912	-4.428	-0.0021288	480.766213553103	36.649	1.85	36.687	35.569	37.419	0.038044					129	49	3	0	0	0	0.845	1	2821	2821		55.504	0	1	5721100	+		84119	21663	58677	58769	93159	93159					0.04085533773957195
VIVDGALLD	9	Unmodified	_VIVDGALLD_					0	0	0			REV__ENSG00000237172|ENST00000449549|B3GNT9	REV__ENSG00000237172|ENST00000449549|B3GNT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.2396240234375	2	457.7633	913.512048	-0.0020297	-9.2913E-07	1.4428	0.00066047	1.4408	0.00065954	457.7637529224213	33.902	0.86442	33.958	33.315	34.179	0.056572					47	21	4	0	0	0	0.024381	1	2395	2395		37.159	3.6661	1	945930	+		84120	28938	58678	58770	93160	93160					0.05183249320384675
VIVDPHLH	8	Unmodified	_VIVDPHLH_					0	0	0		ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	ENSG00000165762|ENST00000641885|OR4K2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2615966796875	2	465.263802	928.513051	-0.21416	-9.9639E-05	-4.3609	-0.002029	-4.575	-0.0021286	465.2616626224276	22.602	0.74398	22.527	22.177	22.921	-0.075296					36	15	4	0	0	0	1.0017	1	809	809		37.028	1.4102	1	585940			84121	7465	58679	58771	93161	93161					0.04593508479945285
VIVEREPGEI	10	Unmodified	_VIVEREPGEI_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.8189697265625	2	570.816596	1139.61864	-0.0012246	-6.9903E-07	3.4693	0.0019803	3.4681	0.0019796	570.8184228443282	75.009	1.0745	74.75	74.285	75.36	-0.25887					85	26	5	0	0	0	0.66532	1	9142	9142		69.628	0.8408	1	4304000	+		84122	24228	58680	58772	93162	93162					0.05441379814897118
VIVHRLLAV	9	Unmodified	_VIVHRLLAV_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.8011474609375	2	510.339844	1018.66514	0.61482	0.00031377	4.1347	0.0021101	4.7495	0.0024239	510.3419613045427	83.241	0.9431	83.03	82.574	83.517	-0.21158					25	21	2	0	0	0	0.024535	1	9989	9989		18.324	10.093	1	611160			84123	1753	58681	58773	93163	93163					0.15654909227498592
VIVHTNPDP	9	Unmodified	_VIVHTNPDP_					0	0	0		NHS|p.Q814Sfs*19|1|0.04|ENSG00000188158|chrX:17726608-17726609|-/T|frameshift_variant;NHS|p.N1245Tfs*24|1|0.47|ENSG00000188158|chrX:17727899-17727899|A/-|frameshift_variant;nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	NHS|p.Q814Sfs*19|1|0.04|ENSG00000188158|chrX:17726608-17726609|-/T|frameshift_variant	NHS|p.Q814Sfs*19|1|0.04|ENSG00000188158|chrX:17726608-17726609|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2657470703125	2	496.263999	990.513445	0.43634	0.00021654	2.3097	0.0011462	2.746	0.0013627	496.2650620795505	37.339	2.9423	37.339	35.96	38.902	0					208	81	5	0	0	0	0.31247	1	3099	3099		73.975	7.5455	1	9375100			84124	9696	58682	58774	93164	93164					0.017808834091283643
VIVKEPAPL	9	Unmodified	_VIVKEPAPL_					0	0	0			REV__ENSG00000170091|ENST00000303177|NSG2	REV__ENSG00000170091|ENST00000303177|NSG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.7900085449219	2	483.305136	964.595718	-0.18751	-9.0623E-05	-3.6928	-0.0017848	-3.8804	-0.0018754	483.30355721712215	36.689	0.40419	36.472	36.245	36.65	-0.21661					14	9	2	0	0	0	0.024436	1	2889	2889		38.806	14.603	1	62322	+		84125	26434	58683	58775	93165	93165					0.11200405488068554
VIVKTLGSPI	10	Unmodified	_VIVKTLGSPI_					0	0	0			REV__CON__P17697	REV__CON__P17697	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.83154296875	2	513.831517	1025.64848	-0.14252	-7.323E-05	-0.26151	-0.00013437	-0.40403	-0.0002076	513.8313241570768	67.575	1.0663	67.286	67.03	68.096	-0.28835					76	26	5	0	0	0	0.91678	1	8051	8051		52.937	1.6012	1	6087100	+	+	84126	19555	58684	58776	93166	93166					0.13668363550914364
VIVKVTMDI	9	Unmodified	_VIVKVTMDI_					0	0	0		ENST00000587125.1_1_17:58040633-58079710:-|nuORF	ENST00000587125.1_1_17:58040633-58079710:-|nuORF	ENST00000587125.1_1_17:58040633-58079710:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.28839111328125	2	509.304278	1016.594	-0.51463	-0.0002621	-0.60592	-0.0003086	-1.1206	-0.0005707	509.30357949624994	64.982	0.59932	64.747	64.452	65.052	-0.2345					25	14	3	0	0	0	0.024487	1	7402	7402		17.365	0	1	360500			84127	17263	58685	58777	93167	93167					0.08637028407815706
VIVPLCVP	8	Unmodified	_VIVPLCVP_					0	0	0			REV__sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	REV__sp|P13285|LMP2_EBVB9Latentmembraneprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=LMP2PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.5302734375	2	420.2566	838.498647	-0.28474	-0.00011966	-1.0713	-0.00045024	-1.3561	-0.0005699	420.25403690220173	23.315	0.13619	23.135	23.021	23.157	-0.17989					4	2	2	0	0	0	0.027866	1	900	900		10.185	0	1	13184	+		84128	37563	58686	58778	93168	93168					0.07293720007442062
VIVPLTCPEL	10	Carbamidomethyl (C)	_VIVPLTC(Carbamidomethyl (C))PEL_	VIVPLTC(1)PEL		VIVPLTC(91)PEL		0	1	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.8186645507812	2	570.820292	1139.62603	-0.91076	-0.00051988	-2.1083	-0.0012034	-3.019	-0.0017233	570.8189258378085	74.798	1.1221	74.808	74.313	75.435	0.010368					85	27	5	0	0	0	0.47726	1	9109	9109		90.777	16.522	1	4241700	+		84129	26602	58687	58779	93169	93169	352				0.061803960909628586
VIVPPVGWLN	10	Unmodified	_VIVPPVGWLN_					0	0	0		ENST00000438649.5_1_2:39811767-39811905:+|nuORF	ENST00000438649.5_1_2:39811767-39811905:+|nuORF	ENST00000438649.5_1_2:39811767-39811905:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.3036499023438	2	547.32386	1092.63317	-1.0714	-0.0005864	-2.8577	-0.0015641	-3.9291	-0.0021505	547.3220726724223	37.547	0.71125	37.484	37.014	37.725	-0.063385					31	19	2	0	0	0	0.03519	1	2985	2985		29.15	4.9468	1	287610			84130	14315	58688	58780	93170	93170					0.09055496753717307
VIVPSSLPR	9	Unmodified	_VIVPSSLPR_					0	0	0			REV__ENST00000563810.1_1_8:41685974-41686286:-|nuORF	REV__ENST00000563810.1_1_8:41685974-41686286:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.301025390625	2	484.300384	966.586216	-0.3848	-0.00018636	0.63055	0.00030538	0.24575	0.00011902	484.30042563791926	54.737	0.59054	54.835	54.525	55.116	0.098015					32	16	3	0	0	0	0.55828	1	5930	5930		55.504	0	1	1869600	+		84131	35236	58689	58781	93171	93171					0.10158637202573573
VIVPSSLPR	9	Unmodified	_VIVPSSLPR_					0	0	0			REV__ENST00000563810.1_1_8:41685974-41686286:-|nuORF	REV__ENST00000563810.1_1_8:41685974-41686286:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	484.300384	966.586216	-0.3848	-0.00018636	0.63055	0.00030538	0.24575	0.00011902	484.30042563791926	54.737	0.59054	54.835	54.525	55.116	0.098015	0	0	NaN	55.504	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1869600	+		84132	35236	58689	58781							0.10158637202573573
VIVRAAHS	8	Unmodified	_VIVRAAHS_					0	0	0			REV__nc|ENSG00000110148|P32239-3|CCKBR	REV__nc|ENSG00000110148|P32239-3|CCKBR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	425.77508544921875	2	426.756144	851.497735	-0.1844	-7.8696E-05	-1.3531	-0.00057745	-1.5375	-0.00065614	426.7571737802829	42.256	0.18448	42.024	41.971	42.155	-0.23186					5	4	2	0	0	0	0.027866	1	3795	3795		20.482	0	1	28307	+		84133	21842	58690	58782	93172	93172					0.0660464168274757
VIVSKPHSW	9	Unmodified	_VIVSKPHSW_					0	0	0			REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	527.3059692382812	2	526.798009	1051.58147	0.93787	0.00049407	1.054	0.00055522	1.9918	0.0010493	526.7988585815973	97.7	0.48541	97.576	97.327	97.812	-0.12368					17	10	3	0	0	0	0.024436	1	12129	12129		23.042	0	1	112310	+		84134	24752	58691	58783	93173	93173					0.05773753059793307
VIVSVTTLIN	10	Unmodified	_VIVSVTTLIN_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A;SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.3048706054688	2	529.826432	1057.63831	-0.44718	-0.00023693	-0.74982	-0.00039728	-1.197	-0.0006342	529.8260785820637	64.313	0.15636	64.086	64.027	64.184	-0.22773					5	3	2	0	0	0	0.03519	1	7303	7303		21.96	0	1	184290			84135	7814	58692	58784	93174	93174					0.11179755825673965
VIVTAIVVGG	10	Unmodified	_VIVTAIVVGG_					0	0	0			REV__nc|ENSG00000142192|P05067-10|APP	REV__nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.29656982421875	2	464.29731	926.580068	-0.40728	-0.0001891	-0.48382	-0.00022464	-0.8911	-0.00041374	464.2967012948291	56.442	0.82912	56.442	56.174	57.003	0					48	23	4	0	0	0	0.55296	1	6286	6286		82.305	2.5924	1	3600900	+		84136	24142	58693	58785	93175	93175					0.11384118971056978
VIVYFMDL	8	Unmodified	_VIVYFMDL_					0	0	0		ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000495756.5_1_3:112255248-112280627:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.6048278808594	2	500.264622	998.514691	-0.78648	-0.00039345	4.1765	0.0020894	3.39	0.0016959	500.26663496754793	55.847	1.022	55.691	55.312	56.334	-0.15656					38	26	3	0	0	0	0.027866	1	6089	6089		46.766	0	1	575650			84137	15553	58694	58786	93176	93176					0.015373814536701502
VIVYVLPN	8	Unmodified	_VIVYVLPN_					0	0	0			REV__nc|ENSG00000168398|P30411-2|BDKRB2	REV__nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7640686035156	2	458.778754	915.542954	-1.0059	-0.00046151	3.0526	0.0014004	2.0466	0.00093894	458.78073665158666	36	0.20222	35.957	35.83	36.032	-0.042458					8	5	2	0	0	0	0.027866	1	2804	2804		21.702	0	1	98611	+		84138	26256	58695	58787	93177	93177					0.08180447425274906
VIWEIRAI	8	Unmodified	_VIWEIRAI_					0	0	0		ENST00000332843.2_1_8:120079524-120116116:+|nuORF	ENST00000332843.2_1_8:120079524-120116116:+|nuORF	ENST00000332843.2_1_8:120079524-120116116:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.3049621582031	2	500.302927	998.591301	-0.0382	-1.9111E-05	2.6083	0.001305	2.5702	0.0012859	500.3041456687165	60.043	1.1568	59.867	59.478	60.635	-0.1761					62	29	4	0	0	0	0.71833	1	6684	6684		65.803	7.0212	1	4970600			84139	12363	58696	58788	93178	93178					0.09194941065175044
VIWGTDVNV	9	Unmodified	_VIWGTDVNV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;chr8:47973064-47976686|511|10.2|0.61|4.07|+|ENST00000648407|MCM4,MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7656555175781	2	501.766374	1001.5182	0.14192	7.121E-05	0.041941	2.1044E-05	0.18386	9.2255E-05	501.7661977747597	74.262	0.75459	74.003	73.78	74.535	-0.25887					37	17	3	0	0	0	0.17822	1	9061	9061		93.195	21.9	1	1542500			84140	2593	58697	58789	93179	93179					0.017497675518939104
VIWPNPIVW	9	Unmodified	_VIWPNPIVW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3184814453125	2	562.318577	1122.6226	0.5457	0.00030686	-0.60286	-0.000339	-0.057166	-3.2145E-05	562.3183197561337	99.764	0.73508	99.629	99.095	99.83	-0.13526					40	18	3	0	0	0	0.20304	2	12365	12365;12379		88.643	30.832	1	341540			84141	8881	58698	58790	93180;93181	93180					0.06619514099270418
VIWPNPIVW	9	Unmodified	_VIWPNPIVW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3180541992188	2	562.318577	1122.6226	0.83077	0.00046716	-1.0921	-0.00061413	-0.26137	-0.00014697	562.3179082213078	99.751	0.62002	99.626	99.176	99.796	-0.12458					38	16	3	0	0	0	0.14199	2	12387	12387;12396		101.21	17.239	1	344300			84142	8881	58698	58790	93182;93183	93182					0.06619514099270418
VIWPNPIVW	9	Unmodified	_VIWPNPIVW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.3176879882812	2	562.318577	1122.6226	-0.14389	-8.0913E-05	-0.088003	-4.9486E-05	-0.23189	-0.0001304	562.3184912277312	99.867	0.58178	99.696	99.279	99.861	-0.17088					37	15	3	0	0	0	0.52323	2	12372	12372;12381		57.811	6.489	1	363150			84143	8881	58698	58790	93184;93185	93184					0.06619514099270418
VIWPNPVIW	9	Unmodified	_VIWPNPVIW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.3186645507812	2	562.318577	1122.6226	0.61283	0.00034461	-0.62652	-0.0003523	-0.013685	-7.6955E-06	562.3180819679015	98.972	0.78701	98.836	98.547	99.334	-0.13528					53	19	4	0	0	0	0.15889	4	12254	12242;12254;12266;12277		97.473	20.699	1	602720			84144	8881	58699	58791	93186;93187;93188;93189	93187					0.06619514099270418
VIWPNPVIW	9	Unmodified	_VIWPNPVIW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3186645507812	2	562.318577	1122.6226	1.0565	0.00059411	-0.85938	-0.00048324	0.19716	0.00011087	562.3180944465894	98.944	1.2441	98.819	98.069	99.313	-0.12458					73	30	4	0	0	0	0.14199	4	12259	12251;12259;12269;12281		101.21	32.727	1	581480			84145	8881	58699	58791	93190;93191;93192;93193	93191					0.06619514099270418
VIWPNPVIW	9	Unmodified	_VIWPNPVIW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3191528320312	2	562.318577	1122.6226	0.83077	0.00046716	-1.0921	-0.00061413	-0.26137	-0.00014697	562.3179082213078	99.751	0.62002	99.626	99.176	99.796	-0.12458					38	16	3	0	0	0	0.40179	1	12376	12376		65.803	0	1	344300			84146	8881	58699	58791	93194	93194					0.06619514099270418
VIWPNPVIW	9	Unmodified	_VIWPNPVIW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.3182373046875	2	562.318577	1122.6226	-0.20647	-0.0001161	-0.0056743	-3.1908E-06	-0.21214	-0.00011929	562.3184977261947	98.991	0.81255	98.823	98.551	99.363	-0.16863					56	18	4	0	0	0	0.14199	4	12239	12239;12250;12262;12275		101.21	32.727	1	587770			84147	8881	58699	58791	93195;93196;93197;93198	93195					0.06619514099270418
VIYFISAMY	9	Unmodified	_VIYFISAMY_					0	0	0			REV__ENST00000568668.1_1_15:52885687-52897350:-|nuORF	REV__ENST00000568668.1_1_15:52885687-52897350:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8313598632812	2	553.783179	1105.5518	-0.12501	-6.9229E-05	4.4277	0.002452	4.3027	0.0023828	553.7855180948194	52.936	0.69802	52.746	52.51	53.208	-0.18982					25	17	2	0	0	0	0.024517	1	5537	5537		19.36	7.1531	1	193750	+		84148	35351	58700	58792	93199	93199					0.0032505299946024024
VIYGFFIAL	9	Unmodified	_VIYGFFIAL_					0	0	0		ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.8040771484375	2	521.802229	1041.5899	-0.19074	-9.9529E-05	3.5133	0.0018333	3.3226	0.0017337	521.8039699427699	39.872	0.84398	39.642	39.391	40.235	-0.23021					39	21	2	0	0	0	0.48384	1	3415	3415		60.404	0.10967	1	2378900			84149	8678	58701	58793	93200	93200					0.07077306976407272
VIYGKKRL	8	Unmodified	_VIYGKKRL_					0	0	0			REV__nc|ENSG00000206203|Q96PF2|TSSK2	REV__nc|ENSG00000206203|Q96PF2|TSSK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.2711181640625	2	488.818744	975.622936	-0.064783	-3.1667E-05	0.48261	0.00023591	0.41782	0.00020424	488.8186167961989	24.204	0.2606	24.029	23.829	24.089	-0.17484					7	5	2	0	0	0	0.027866	1	1008	1008		19.36	12.167	1	47199	+		84150	37091	58702	58794	93201	93201					0.13414933819137786
VIYIICFPI	9	Unmodified	_VIYIICFPI_					0	0	0			REV__ENSG00000181616|ENST00000322653|OR52H1	REV__ENSG00000181616|ENST00000322653|OR52H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8309936523438	2	540.811739	1079.60893	-1.6421	-0.00088806	0.054756	2.9613E-05	-1.5873	-0.00085845	540.8122160550876	75.34	0.47476	75.34	75.076	75.551	0					20	12	2	0	0	0	0.024389	1	9281	9281		39.021	0	1	624510	+		84151	27413	58703	58795	93202	93202					0.07230520275834351
VIYKYVLD	8	Unmodified	_VIYKYVLD_					0	0	0			REV__ENSG00000144635|ENST00000273130|DYNC1LI1	REV__ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3316345214844	2	506.789318	1011.56408	-0.81998	-0.00041556	2.2961	0.0011637	1.4761	0.00074809	506.79042609764656	73.265	0.29141	73.265	73.146	73.438	0					12	7	2	0	0	0	0.027866	1	8966	8966		18.324	6.8134	1	207800	+		84152	24347	58704	58796	93203	93203					0.058764127341419226
VIYRQGWIT	9	Unmodified	_VIYRQGWIT_					0	0	0			REV__ENST00000500949.6_1_15:41595550-41595637:+|nuORF	REV__ENST00000500949.6_1_15:41595550-41595637:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	568.784423828125	2	568.316566	1134.61858	0.4049	0.00023011	-3.3285	-0.0018916	-2.9236	-0.0016615	568.3159228701542	94.072	1.276	93.95	93.278	94.554	-0.12215					46	29	3	0	0	0	0.024457	1	11676	11676		21.96	0	1	102990	+		84153	33909	58705	58797	93204	93204					0.056654246055586555
VKAALKSLIP	10	Unmodified	_VKAALKSLIP_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.357421875	2	520.347335	1038.68012	0.38582	0.00020076	-0.54286	-0.00028248	-0.15705	-8.1718E-05	520.3468468979198	82.338	0.60791	82.157	81.941	82.549	-0.18079					17	13	2	0	0	0	0.03519	1	9913	9913		30.318	0	1	25355			84154	1691	58706	58798	93205	93205					0.16232356304840323
VKAAQKRR	8	Unmodified	_VKAAQKRR_					0	0	0		ENSG00000005100|ENST00000225296|DHX33;nc|ENSG00000005100|Q9H6R0-2|DHX33	ENSG00000005100|ENST00000225296|DHX33	ENSG00000005100|ENST00000225296|DHX33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.2775573730469	2	478.809242	955.603932	0.23904	0.00011446	2.5796	0.0012351	2.8186	0.0013496	478.8104393723225	80.852	0.44312	80.646	80.426	80.869	-0.20633					18	10	2	0	0	0	0.027866	1	9733	9733		24.203	11.244	1	142000			84155	758	58707	58799	93206	93206					0.12435397248077606
VKAASVLCAL	10	Unmodified	_VKAASVLCAL_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.7904052734375	2	487.788795	973.563038	0.33726	0.00016451	3.3292	0.001624	3.6665	0.0017885	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0616	1	10216	10216		37.812	4.2959	1	1999500	+		84156	20440	58708	58800	93207	93207					0.0751987509358969
VKAFVTQDI	9	Unmodified	_VKAFVTQDI_					0	0	0		ENST00000495533.1_1_22:31501645-31501693:-|nuORF;ENST00000469262.1_1_22:31501139-31501933:-|nuORF;ENSG00000198832|ENST00000400299|SELENOM	ENST00000495533.1_1_22:31501645-31501693:-|nuORF	ENST00000495533.1_1_22:31501645-31501693:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.77093505859375	2	510.78985	1019.56515	-0.49907	-0.00025492	-0.22443	-0.00011463	-0.7235	-0.00036956	510.7895402028928	84.15	0.80772	84.15	83.779	84.587	0					30	18	2	0	0	0	0.01791	1	10572	10572		127.46	20.454	1	577930			84157	10217	58709	58801	93208	93208					0.056146271030456774
VKAIRILA	8	Unmodified	_VKAIRILA_					0	0	0		TXNIP|p.V44I|1|0.28|ENSG00000265972|chr1:145996137-145996137|C/T|missense_variant	TXNIP|p.V44I|1|0.28|ENSG00000265972|chr1:145996137-145996137|C/T|missense_variant	TXNIP|p.V44I|1|0.28|ENSG00000265972|chr1:145996137-145996137|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.25909423828125	2	442.308013	882.601472	-0.28018	-0.00012392	3.2391	0.0014327	2.9589	0.0013088	442.3101186397545	27.28	0.1466	27.28	27.215	27.361	0					6	3	2	0	0	0	0.027866	1	1481	1481		18.324	0	1	37059			84158	38120	58710	58802	93209	93209					0.15547548790414112
VKAIRLLEP	9	Unmodified	_VKAIRLLEP_					0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.7669067382812	2	519.837134	1037.65972	-0.67948	-0.00035322	0.17629	9.164E-05	-0.50319	-0.00026158	519.8369850242891	48.315	0.44063	48.039	47.851	48.292	-0.27598					20	11	2	0	0	0	0.024323	1	4765	4765		44.117	1.7207	1	164090	+	+	84159	19606	58711	58803	93210	93210					0.1423918564505584
VKAKAREV	8	Unmodified	_VKAKAREV_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4;nc|ENSG00000196440|Q5H9R4-2|ARMCX4;nc|ENSG00000196440|Q5H9R4-3|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4;nc|ENSG00000196440|Q5H9R4-2|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.784423828125	2	450.784902	899.55525	0.027053	1.2195E-05	-1.1807	-0.00053224	-1.1536	-0.00052005	450.78445917154596	28.47	2.1759	28.551	28.167	30.343	0.080812					127	53	5	0	0	0	0.32162	2	1612	1612;1636		108.09	11.897	1	29153000			84160	9876;18625	58712	58804	93211;93212	93211					0.10145483888322815
VKAKIYDN	8	Unmodified	_VKAKIYDN_					0	0	0			REV__sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	REV__sp|P03226|MCP_EBVB9MajorcapsidproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=MCPPE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.7582092285156	2	475.768917	949.523281	0.58983	0.00028062	-0.3783	-0.00017998	0.21153	0.00010064	475.7684163933633	37.066	0.85157	36.873	36.578	37.43	-0.193					36	21	3	0	0	0	0.027866	1	2984	2984		37.159	6.6555	1	597150	+		84161	37548	58713	58805	93213	93213					0.04650071414505419
VKAKKQLTK	9	Unmodified	_VKAKKQLTK_					0	0	0			REV__ENST00000510118.5_2_6:167184367-167271722:-|nuORF	REV__ENST00000510118.5_2_6:167184367-167271722:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2509765625	2	522.350409	1042.68626	-0.20346	-0.00010628	-0.14958	-7.8133E-05	-0.35304	-0.00018441	522.3501053262191	35.032	0.39883	34.819	34.601	35	-0.21246					13	9	2	0	0	0	0.024541	1	2625	2625		10.866	0	1	65614	+		84162	34098	58714	58806	93214	93214					0.16662874536359595
VKAKQKKR	8	Unmodified	_VKAKQKKR_					0	0	0			REV__ENSG00000187730|ENST00000378585|GABRD	REV__ENSG00000187730|ENST00000378585|GABRD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3056640625	2	493.335093	984.655633	-1.0334	-0.00050981	0.96386	0.00047551	-0.069541	-3.4307E-05	493.33460826280617	69.494	0.20675	69.226	69.121	69.327	-0.26725					7	4	2	0	0	0	0.027866	1	8045	8045		12.207	0	1	61269	+		84163	27963	58715	58807	93215	93215					0.1626914094198355
VKAKRAAA	8	Unmodified	_VKAKRAAA_					0	0	0			REV__ENSG00000157152|ENST00000621198|SYN2	REV__ENSG00000157152|ENST00000621198|SYN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	408.7322998046875	2	407.766512	813.518471	0.23556	9.6053E-05	-0.65825	-0.00026841	-0.4227	-0.00017236	407.7663075088863	31.207	0.42501	31.207	31.003	31.428	0					12	9	2	0	0	0	0.027866	1	2057	2057		26.796	1.3459	1	77452	+		84164	25116	58716	58808	93216	93216					0.10425232062402756
VKALKTRYI	9	Unmodified	_VKALKTRYI_					0	0	0		nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-2|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.821533203125	2	546.350409	1090.68626	-1.8953	-0.0010355	1.1187	0.00061119	-0.77662	-0.00042431	546.3508723378654	65.032	0.99989	64.77	64.341	65.34	-0.2626					54	26	3	0	0	0	0.02435	1	7583	7583		51.335	8.9393	1	399620			84165	4444	58717	58809	93217	93217					0.14454874536363604
VKAPGNIDAL	10	Unmodified	_VKAPGNIDAL_					0	0	0			REV__nc|ENSG00000152270|Q13370-2|PDE3B	REV__nc|ENSG00000152270|Q13370-2|PDE3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.80059814453125	2	499.287474	996.560395	-0.047886	-2.3909E-05	-0.72762	-0.00036329	-0.7755	-0.0003872	499.2868000764641	28.373	0.53292	28.454	28.124	28.657	0.080811					19	12	3	0	0	0	0.03519	1	1595	1595		25.574	0	1	102600	+		84166	24831	58718	58810	93218	93218					0.061977429602734446
VKAPPALRGR	10	Unmodified	_VKAPPALRGR_					0	0	0		ENST00000478406.5_1_1:227171537-227174435:+|nuORF	ENST00000478406.5_1_1:227171537-227174435:+|nuORF	ENST00000478406.5_1_1:227171537-227174435:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8085327148438	2	532.838	1063.66145	-0.14274	-7.6056E-05	-0.042782	-2.2796E-05	-0.18552	-9.8852E-05	533.3391284997335	45.747	0.14402	45.65	45.597	45.741	-0.096649					8	3	3	0	0	0	0.03519	1	4378	4378		20.947	5.3051	1	270450			84167	15148	58719	58811	93219	93219					0.1321623945364081
VKAQEVQW	8	Unmodified	_VKAQEVQW_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7599182128906	2	494.266542	986.51853	-0.77645	-0.00038377	0.14578	7.2055E-05	-0.63067	-0.00031172	494.2664907488997	45.937	0.66499	45.785	45.544	46.209	-0.15156					24	18	2	0	0	0	0.027866	1	4535	4535		44.117	0	1	1422500			84168	10690	58720	58812	93220	93220					0.024731872717552505
VKARKLGG	8	Unmodified	_VKARKLGG_					0	0	0			REV__ENST00000509044.1_1_4:84519769-84525917:+|nuORF	REV__ENST00000509044.1_1_4:84519769-84525917:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.7619934082031	2	414.774337	827.534121	1.0569	0.00043838	1.1669	0.00048401	2.2238	0.00092239	414.7747164921443	87.825	0.44198	87.825	87.728	88.17	0					19	10	2	0	0	0	0.027866	1	11109	11109		19.36	7.849	1	207510	+		84169	23884	58721	58813	93221	93221					0.1134551857948054
VKARKLGG	8	Unmodified	_VKARKLGG_					0	0	0			REV__ENST00000509044.1_1_4:84519769-84525917:+|nuORF	REV__ENST00000509044.1_1_4:84519769-84525917:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	414.774337	827.534121	0.1889	7.835E-05	6.2469	0.0025911	6.4358	0.0026694	414.7770375996998	87.914	0.35283	87.778	87.559	87.912	-0.13613	-0.023186	0.0028988	NaN	19.36	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267550	+		84170	23884	58721	58813							0.1134551857948054
VKARPGRPG	9	Unmodified	_VKARPGRPG_					0	0	0		ENST00000430466.6_1_11:66205689-66206247:-|nuORF;ENST00000310999.11_1_11:66205692-66206247:-|nuORF	ENST00000430466.6_1_11:66205689-66206247:-|nuORF	ENST00000430466.6_1_11:66205689-66206247:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	468.3055114746094	2	469.288143	936.561733	0.55664	0.00026123	2.4027	0.0011276	2.9594	0.0013888	469.2891430007576	52.677	1.9825	52.769	52.2	54.182	0.091938					71	53	2	0	0	0	0.024294	1	5629	5629		55.504	11.387	1	234420			84171	12074	58722	58814	93222	93222					0.09091421839707436
VKAVKRVK	8	Unmodified	_VKAVKRVK_					0	0	0			REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	2	464.326737	926.63892	-0.32404	-0.00015046	1.7393	0.00080759	1.4152	0.00065713	464.3276018904338	51.341	0.21781	51.428	51.227	51.445	0.087006					7	5	2	0	0	0	0.027866	1	5362	5362		19.36	5.5846	1	189260	+		84172	32587	58723	58815	93223	93223					0.17266640056038796
VKAYQTNKI	9	Unmodified	_VKAYQTNKI_					0	0	0			REV__ENST00000360000.8_1_X:102508893-102510067:-|nuORF	REV__ENST00000360000.8_1_X:102508893-102510067:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.7814331054688	2	532.808574	1063.60259	0.14017	7.4686E-05	0.41232	0.00021969	0.55249	0.00029437	532.80865540391	59.399	0.5271	59.15	58.93	59.457	-0.24842					26	12	3	0	0	0	0.024511	1	6577	6577		40.778	3.6191	1	399460	+		84173	30894	58724	58816	93224	93224					0.07333718368658992
VKCQKTYVD	9	Unmodified	_VKCQKTYVD_					0	0	0			REV__ENST00000510543.1_1_4:63682918-63683389:+|nuORF	REV__ENST00000510543.1_1_4:63682918-63683389:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.2824096679688	2	542.278792	1082.54303	-1.5663	-0.00084936	4.4594	0.0024182	2.8931	0.0015689	542.2812364836782	80.527	0.44942	80.549	80.4	80.85	0.021439					14	10	2	0	0	0	0.024288	1	9919	9919		62.107	12.083	1	289480	+		84174	34105	58725	58817	93225	93225					0.005060793629809268
VKCSLEGPN	9	Unmodified	_VKCSLEGPN_					0	0	0			REV__ENST00000508492.1_1_4:152065365-152065440:-|nuORF	REV__ENST00000508492.1_1_4:152065365-152065440:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7923583984375	2	473.73676	945.458967	-0.37658	-0.0001784	0.88827	0.00042081	0.51169	0.00024241	473.73703228310677	55.055	0.67772	55.153	54.845	55.523	0.098015					28	18	2	0	0	0	0.0242	1	6002	6002		69.628	3.7302	1	535150	+		84175	34066	58726	58818	93226	93226					-0.01594451733922142
VKCSLEGPN	9	Unmodified	_VKCSLEGPN_					0	0	0			REV__ENST00000508492.1_1_4:152065365-152065440:-|nuORF	REV__ENST00000508492.1_1_4:152065365-152065440:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	473.73676	945.458967	0.36077	0.00017091	-0.053199	-2.5202E-05	0.30757	0.00014571	473.7365911379603	55.289	0.62892	55.139	54.894	55.523	-0.15036	-0.053634	-0.00050881	NaN	69.628	35	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686370	+		84176	34066	58726	58818							-0.01594451733922142
VKCSLEGPN	9	Unmodified	_VKCSLEGPN_					0	0	0			REV__ENST00000508492.1_1_4:152065365-152065440:-|nuORF	REV__ENST00000508492.1_1_4:152065365-152065440:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.73676	945.458967	-0.56661	-0.00026842	0.90564	0.00042903	0.33903	0.00016061	473.7369290984776	55.5	0.30787	55.285	55.104	55.412	-0.21551	0.09222	0.00039966	NaN	69.628	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83804	+		84177	34066	58726	58818							-0.01594451733922142
VKCTAHNL	8	Unmodified	_VKCTAHNL_					0	0	0			REV__ENST00000475978.1_1_1:249106101-249108957:-|nuORF	REV__ENST00000475978.1_1_1:249106101-249108957:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7567443847656	2	443.234187	884.453822	-0.21404	-9.4871E-05	0.53705	0.00023804	0.32301	0.00014317	443.234446045795	21.026	0.68575	20.936	20.766	21.452	-0.090092					20	13	2	0	0	0	0.027866	1	623	623		21.96	0	1	29321	+		84178	26919	58727	58819	93227	93227					0.006972891941018133
VKCTASGLTW	10	Unmodified	_VKCTASGLTW_					0	0	0			REV__ENSG00000183150|ENST00000651487|GPR19	REV__ENSG00000183150|ENST00000651487|GPR19	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2754516601562	2	533.273509	1064.53247	-0.44721	-0.00023849	4.0842	0.002178	3.637	0.0019395	533.2758097120734	49.639	0.84327	49.639	49.399	50.242	0					61	23	4	0	0	0	0.74632	1	5141	5141		64.207	0.901	1	3307600	+		84179	27545	58728	58820	93228	93228					0.00278096708530029
VKCVGNQSQL	10	Unmodified	_VKCVGNQSQL_					0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.2739868164062	2	538.281866	1074.54918	-0.59914	-0.00032251	-4.374	-0.0023545	-4.9732	-0.002677	538.7832546406702	57.366	0.6847	57.366	57.073	57.758	0					32	17	2	0	0	0	0.17599	2	6496	6485;6496		124.08	22.553	1	6131600	+		84180	19097	58729	58821	93229;93230	93230					0.014885975944935126
VKCVGNQSQL	10	Unmodified	_VKCVGNQSQL_					0	0	0			REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	REV__AKAP3|p.S807Lfs*31|1|0.05|ENSG00000111254|chr12:4615881-4615882|-/GACTCGGGGCACGGGCACCCTGTGGGCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.7843017578125	2	538.281866	1074.54918	-0.59914	-0.00032251	-4.374	-0.0023545	-4.9732	-0.002677	538.7832546406702	57.366	0.6847	57.366	57.073	57.758	0					32	17	2	0	0	0	0.03519	1	6455	6455		75.043	0	1	6131600	+		84181	19097	58729	58821	93231	93231					0.014885975944935126
VKDAQEIAR	9	Unmodified	_VKDAQEIAR_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2881469726562	2	515.288005	1028.56146	-0.16419	-8.4605E-05	-0.68695	-0.00035397	-0.85113	-0.00043858	515.2876455401987	34.346	1.2585	34.139	33.824	35.083	-0.20696					72	31	4	0	0	0	0.28753	1	2544	2544		77.318	0.54344	1	6499000	+		84182	19687	58730	58822	93232	93232					0.04831957329179204
VKDAWPNL	8	Unmodified	_VKDAWPNL_					0	0	0			REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3104248046875	2	471.75581	941.497067	0.081178	3.8296E-05	4.2739	0.0020162	4.3551	0.0020545	471.75756691171114	41.672	0.37124	41.549	41.346	41.718	-0.12299					16	9	3	0	0	0	0.027866	1	3680	3680		49.442	1.5259	1	105140	+		84183	20047	58731	58823	93233	93233					0.023978022430242163
VKDAWPNL	8	Unmodified	_VKDAWPNL_					0	0	0			REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.75581	941.497067	-0.24489	-0.00011553	4.489	0.0021177	4.2441	0.0020022	471.7576295817776	41.844	0.51903	41.612	41.351	41.87	-0.23186	0.0090599	0.00013908	NaN	49.442	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105170	+		84184	20047	58731	58823							0.023978022430242163
VKDAWPNL	8	Unmodified	_VKDAWPNL_					0	0	0			REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.75581	941.497067	-0.31869	-0.00015034	4.2197	0.0019907	3.901	0.0018403	471.75752388616456	41.878	0.28979	41.648	41.472	41.761	-0.23029	0.044767	-0.00011497	NaN	49.442	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100040	+		84185	20047	58731	58823							0.023978022430242163
VKDEMRDLS	9	Unmodified	_VKDEMRDLS_					0	0	0			REV__ENST00000429998.2_6:34249014-34249158:+|nuORF	REV__ENST00000429998.2_6:34249014-34249158:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2943115234375	2	546.771331	1091.52811	-0.48649	-0.000266	-1.4552	-0.00079564	-1.9416	-0.0010616	546.7706206952704	57.136	0.65699	56.911	56.738	57.395	-0.22479					28	17	3	0	0	0	0.024457	1	6281	6281		21.96	0	1	279380	+		84186	32348	58732	58824	93234	93234					-0.013994125050203365
VKDERELSV	9	Unmodified	_VKDERELSV_					0	0	0			REV__ENSG00000132688|ENST00000368223|NES	REV__ENSG00000132688|ENST00000368223|NES	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7716674804688	2	537.793121	1073.57169	-0.26078	-0.00014025	-1.0742	-0.00057771	-1.335	-0.00071796	537.7932382749251	58.563	0.15765	58.382	58.268	58.426	-0.18134					6	3	2	0	0	0	0.024477	1	6432	6432		27.882	0	1	103960	+		84187	23309	58733	58825	93235	93235					0.03784520263752711
VKDERELSV	9	Unmodified	_VKDERELSV_					0	0	0			REV__ENSG00000132688|ENST00000368223|NES	REV__ENSG00000132688|ENST00000368223|NES	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	537.793121	1073.57169	-0.29225	-0.00015717	2.7302	0.0014683	2.4379	0.0013111	537.7955345805325	58.067	0.69933	58.067	57.796	58.495	0	-0.12685	-0.0007147	NaN	27.882	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476700	+		84188	23309	58733	58825							0.03784520263752711
VKDERELSV	9	Unmodified	_VKDERELSV_					0	0	0			REV__ENSG00000132688|ENST00000368223|NES	REV__ENSG00000132688|ENST00000368223|NES	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.793121	1073.57169	-1.2118	-0.00065167	7.0291	0.0037802	5.8174	0.0031285	537.7973069096508	58.162	0.53575	57.987	57.825	58.36	-0.1749	-0.20711	0.0039092	NaN	27.882	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548760	+		84189	23309	58733	58825							0.03784520263752711
VKDERELSV	9	Unmodified	_VKDERELSV_					0	0	0			REV__ENSG00000132688|ENST00000368223|NES	REV__ENSG00000132688|ENST00000368223|NES	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	537.793121	1073.57169	-0.79163	-0.00042573	4.284	0.0023039	3.4923	0.0018781	538.2950890446798	58.248	0.65141	58.339	57.835	58.486	0.091217	0.14555	0.00095655	NaN	27.882	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328210	+		84190	23309	58733	58825							0.03784520263752711
VKDFQELSL	9	Unmodified	_VKDFQELSL_					0	0	0		ENSG00000182264|ENST00000332955|IZUMO1;nc|ENSG00000182264|Q8IYV9-2|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.7883911132812	2	539.792589	1077.57063	-1.1314	-0.0006107	-4.3764	-0.0023623	-5.5077	-0.002973	539.7900164000199	57.33	0.71268	57.425	57.088	57.801	0.095306					35	18	3	0	0	0	0.33603	1	6366	6366		70.816	1.1886	1	4246600			84191	9120	58734	58826	93236	93236					0.03494305894855643
VKDFQELSL	9	Unmodified	_VKDFQELSL_					0	0	0		ENSG00000182264|ENST00000332955|IZUMO1;nc|ENSG00000182264|Q8IYV9-2|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.792589	1077.57063	-0.83683	-0.00045172	-4.4719	-0.0024139	-5.3087	-0.0028656	539.7896234958903	57.765	0.72567	57.588	57.206	57.932	-0.17775	0.03188	0.00022396	NaN	70.816	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	823590			84192	9120	58734	58826							0.03494305894855643
VKDFQELSL	9	Unmodified	_VKDFQELSL_					0	0	0		ENSG00000182264|ENST00000332955|IZUMO1;nc|ENSG00000182264|Q8IYV9-2|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.792589	1077.57063	-0.26889	-0.00014514	-5.1994	-0.0028066	-5.4682	-0.0029517	539.7895458039545	57.929	0.64936	57.739	57.222	57.871	-0.19017	0.18338	-0.00056144	NaN	70.816	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1336200			84193	9120	58734	58826							0.03494305894855643
VKDFQELSL	9	Unmodified	_VKDFQELSL_					0	0	0		ENSG00000182264|ENST00000332955|IZUMO1;nc|ENSG00000182264|Q8IYV9-2|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	ENSG00000182264|ENST00000332955|IZUMO1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.792589	1077.57063	-1.2538	-0.00067677	-4.1732	-0.0022526	-5.4269	-0.0029294	539.7898953008865	57.808	0.76631	57.574	57.2	57.966	-0.23363	0.018487	0.00054643	NaN	70.816	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044900			84194	9120	58734	58826							0.03494305894855643
VKDGRRKI	8	Unmodified	_VKDGRRKI_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;KDM5A|p.P1190Lfs*19|1|0.16|ENSG00000073614|chr12:307815-307815|G/-|frameshift_variant	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.31097412109375	2	486.309075	970.603597	0.1072	5.2135E-05	3.0777	0.0014967	3.1849	0.0015488	486.31047267943796	75.059	1.14	74.784	74.479	75.619	-0.27573					63	27	4	0	0	0	0.94517	1	8837	8837		45.952	1.8352	1	2099400			84195	1512	58735	58827	93237	93237					0.11711977528227635
VKDHEVPLG	9	Unmodified	_VKDHEVPLG_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A;DCLRE1A|p.K345*|1|0.2|ENSG00000198924|chr10:113850072-113850073|-/A|frameshift_variant	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2723693847656	2	497.271824	992.529095	0.33768	0.00016792	0.26862	0.00013358	0.6063	0.0003015	497.2720213084273	89.52	1.2819	89.498	89.115	90.397	-0.021645					92	30	6	0	0	0	0.67687	1	11293	11293		47.657	0	1	1256900			84196	10253	58736	58828	93238	93238					0.03253169926188093
VKDHEVPLG	9	Unmodified	_VKDHEVPLG_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A;DCLRE1A|p.K345*|1|0.2|ENSG00000198924|chr10:113850072-113850073|-/A|frameshift_variant	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.27203369140625	2	497.271824	992.529095	0.26598	0.00013226	0.62195	0.00030928	0.88793	0.00044154	497.2720541478914	89.561	1.6965	89.577	89.133	90.83	0.015724					66	40	3	0	0	0	0.62163	1	11216	11216		51.335	3.4199	1	1230800			84197	10253	58736	58828	93239	93239					0.03253169926188093
VKDHVTWASL	10	Unmodified	_VKDHVTWASL_					0	0	0		ENST00000526950.1_1_12:104712789-104714972:+|nuORF	ENST00000526950.1_1_12:104712789-104714972:+|nuORF	ENST00000526950.1_1_12:104712789-104714972:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.2914428710938	2	578.31148	1154.60841	-0.39731	-0.00022977	-2.9614	-0.0017126	-3.3587	-0.0019424	578.3085486111707	99.137	0.43385	98.968	98.595	99.029	-0.16862					12	9	2	0	0	0	0.03519	1	12259	12259		21.686	0	1	36046			84198	16134	58737	58829	93240	93240					0.037288168803115695
VKDQMPQGAP	10	Unmodified	_VKDQMPQGAP_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;ENST00000482556.5_1_20:47242425-47249020:-|nuORF;nc|ENSG00000124126|Q8TCU6-2|PREX1	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.30615234375	2	535.768591	1069.52263	-0.64991	-0.0003482	2.4234	0.0012984	1.7735	0.00095016	535.7689672582266	47.901	0.40897	47.804	47.63	48.039	-0.097553					19	10	2	0	0	0	0.03519	1	4746	4746		49.442	17.487	1	515110			84199	4011	58738	58830	93241	93241					-0.009350912968329794
VKDQMPQGAP	10	Unmodified	_VKDQMPQGAP_					0	0	0		ENSG00000124126|ENST00000371941|PREX1;ENST00000482556.5_1_20:47242425-47249020:-|nuORF;nc|ENSG00000124126|Q8TCU6-2|PREX1	ENSG00000124126|ENST00000371941|PREX1	ENSG00000124126|ENST00000371941|PREX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3058471679688	2	535.768591	1069.52263	-1.1891	-0.0006371	1.0044	0.00053813	-0.18473	-9.8972E-05	535.7690941316341	48.229	0.44853	47.953	47.738	48.187	-0.27598					18	11	2	0	0	0	0.03519	1	4761	4761		42.396	5.237	1	204510			84200	4011	58738	58830	93242	93242					-0.009350912968329794
VKDRFSPEW	9	Unmodified	_VKDRFSPEW_					0	0	0			REV__ABCC2|p.Q524K|1|0.1|ENSG00000023839|chr10:99807423-99807423|C/A|missense_variant	REV__ABCC2|p.Q524K|1|0.1|ENSG00000023839|chr10:99807423-99807423|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.8400268554688	2	582.29583	1162.57711	0.0050918	2.9649E-06	-3.5703	-0.002079	-3.5652	-0.002076	582.2933324531523	74.861	0.96603	74.871	74.397	75.363	0.010376					42	23	3	0	0	0	0.024523	1	9039	9039		29.15	0	1	545640	+		84201	19047	58739	58831	93243	93243					0.002322438462442733
VKDRFSPEW	9	Unmodified	_VKDRFSPEW_					0	0	0			REV__ABCC2|p.Q524K|1|0.1|ENSG00000023839|chr10:99807423-99807423|C/A|missense_variant	REV__ABCC2|p.Q524K|1|0.1|ENSG00000023839|chr10:99807423-99807423|C/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	582.29583	1162.57711	-0.7734	-0.00045035	-3.3428	-0.0019465	-4.1162	-0.0023968	582.2936893851326	75.062	0.80508	74.803	74.409	75.214	-0.25887	-0.024374	0.00046431	NaN	34.173	36	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650150	+		84202	19047	58739	58831							0.002322438462442733
VKDRIATIN	9	Unmodified	_VKDRIATIN_					0	0	0		ENSG00000171481|ENST00000304820|OR1L3	ENSG00000171481|ENST00000304820|OR1L3	ENSG00000171481|ENST00000304820|OR1L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3080444335938	2	515.306198	1028.59784	-0.45028	-0.00023203	3.259	0.0016794	2.8087	0.0014473	515.3077403903917	62.664	0.82809	62.727	62.483	63.311	0.062767					35	18	2	0	0	0	0.2101	1	7229	7229		87.696	5.4559	1	6202100			84203	8156	58740	58832	93244	93244					0.08468834225914179
VKDSQYEMDSE	11	Unmodified	_VKDSQYEMDSE_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.18896484375	3	444.187097	1329.53946	-0.24747	-0.00010992	3.3182	0.0014739	3.0707	0.001364	444.1887742329825	33.276	1.1308	33.076	32.771	33.902	-0.20019					86	28	5	0	0	0	0.99648	1	2344	2344		37.6	6.0701	1	8870100			84204	7610	58741	58833	93245	93245					-0.11212679992218
VKEALKKT	8	Unmodified	_VKEALKKT_					0	0	0		OR9G1|p.L303Tfs*?|1|0.1|ENSG00000174914|chr11:56701287-56701288|-/A|frameshift_variant	OR9G1|p.L303Tfs*?|1|0.1|ENSG00000174914|chr11:56701287-56701288|-/A|frameshift_variant	OR9G1|p.L303Tfs*?|1|0.1|ENSG00000174914|chr11:56701287-56701288|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.26641845703125	2	458.794935	915.575317	-1.3686	-0.00062791	1.0417	0.00047793	-0.3269	-0.00014998	458.79519381499347	28.74	0.4679	28.495	28.241	28.709	-0.24524					15	10	2	0	0	0	0.027866	1	1682	1682		10.866	0	1	64448			84205	18929	58742	58834	93246	93246					0.11415234828268694
VKEDSVLN	8	Unmodified	_VKEDSVLN_					0	0	0		ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.24761962890625	2	452.242732	902.470912	-0.20786	-9.4002E-05	1.8854	0.00085264	1.6775	0.00075863	452.244557454852	39.853	0.38181	39.623	39.429	39.811	-0.23021					15	9	2	0	0	0	0.027866	1	3361	3361		42.396	0	1	58671			84206	97	58743	58835	93247	93247					0.015774882809068913
VKEFKQIIN	9	Unmodified	_VKEFKQIIN_					0	0	0			REV__nc|ENSG00000170266|P16278-2|GLB1	REV__nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.8314819335938	2	559.832049	1117.64954	-0.66156	-0.00037036	0.59905	0.00033536	-0.06251	-3.4995E-05	559.832158678196	78.962	1.7548	78.77	78.422	80.177	-0.1921					114	41	4	0	0	0	0.50848	1	9799	9799		58.782	0	1	3397800	+		84207	26451	58744	58836	93248	93248					0.0954257791981945
VKEHVARL	8	Unmodified	_VKEHVARL_					0	0	0			REV__ENST00000563957.6_1_16:30392441-30392549:-|nuORF	REV__ENST00000563957.6_1_16:30392441-30392549:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.29058837890625	2	476.290351	950.566149	2.315	0.0011026	-2.3485	-0.0011186	-0.033542	-1.5976E-05	476.289082723405	18.94	0.69294	18.706	18.483	19.176	-0.23345					25	13	3	0	0	0	0.78609	1	346	346		60.294	5.5293	1	404600	+		84208	27314	58745	58837	93249	93249					0.08888886262604956
VKEIFNNM	8	Unmodified	_VKEIFNNM_					0	0	0			REV__ENSG00000164506|ENST00000321680|STXBP5	REV__ENSG00000164506|ENST00000321680|STXBP5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.75830078125	2	497.754953	993.495352	0.41286	0.0002055	-1.951	-0.00097114	-1.5382	-0.00076563	497.75377027341364	67.941	0.60748	67.96	67.63	68.237	0.018921					32	15	3	0	0	0	0.027866	1	8078	8078		29.15	0	1	1322000	+		84209	25763	58746	58838	93250	93250					-0.0016557483721726385
VKEITKKD	8	Unmodified	_VKEITKKD_					0	0	0			REV__ENSG00000140015|ENST00000322893|KCNH5	REV__ENSG00000140015|ENST00000322893|KCNH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.80035400390625	2	480.78985	959.565146	0.37395	0.00017979	0.32037	0.00015403	0.69432	0.00033382	480.78981033611296	22.356	0.61262	22.154	21.855	22.468	-0.20199					22	12	2	0	0	0	0.027866	1	732	732		55.504	5.4797	1	86512	+		84210	23983	58747	58839	93251	93251					0.0837462710304635
VKEKETTVV	9	Unmodified	_VKEKETTVV_					0	0	0			REV__OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant;REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.8009033203125	2	516.800414	1031.58628	0.43698	0.00022583	0.57883	0.00029914	1.0158	0.00052498	516.8005415032402	36.863	1.0149	36.863	36.508	37.523	0					65	26	4	0	0	0	0.85329	1	2965	2965		35.618	0	1	2832300	+		84211	36798;24957	58748	58840	93252	93252					0.07174592411888625
VKEKLIPL	8	Unmodified	_VKEKLIPL_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO;REV__nc|ENSG00000160145|O60229|KALRN;REV__TRIO-PPP2R5E|1|fusion	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.3152160644531	2	470.315503	938.616454	-0.27778	-0.00013065	0.37359	0.00017571	0.095808	4.506E-05	470.31554670627236	56.263	1.1121	56.107	55.535	56.648	-0.15655					78	28	4	0	0	0	0.2822	2	6083	6083;6107		119.56	7.9085	1	5525100	+		84212	25290;20078;37730	58749	58841	93253;93254	93253					0.14468995867753165
VKEKLIPL	8	Unmodified	_VKEKLIPL_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO;REV__nc|ENSG00000160145|O60229|KALRN;REV__TRIO-PPP2R5E|1|fusion	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.3155822753906	2	470.315503	938.616454	0.35122	0.00016518	-0.27939	-0.0001314	0.071833	3.3784E-05	470.31523834516287	56.345	1.1351	56.129	55.598	56.733	-0.21607					85	29	4	0	0	0	0.33369	1	6105	6105		106.42	0	1	6063100	+		84213	25290;20078;37730	58749	58841	93255	93255					0.14468995867753165
VKEKLIPL	8	Unmodified	_VKEKLIPL_					0	0	0			REV__nc|ENSG00000038382|O75962-5|TRIO;REV__nc|ENSG00000160145|O60229|KALRN;REV__TRIO-PPP2R5E|1|fusion	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.3160705566406	2	470.315503	938.616454	-0.59671	-0.00028064	0.67347	0.00031674	0.076759	3.6101E-05	470.31569899175867	56.428	1.1519	56.203	55.7	56.851	-0.2248					82	29	4	0	0	0	0.33369	1	6082	6082		106.42	3.6419	1	5121100	+		84214	25290;20078;37730	58749	58841	93256	93256					0.14468995867753165
VKEKPVQV	8	Unmodified	_VKEKPVQV_					0	0	0			REV__nc|ENSG00000133433|P0CG29|GSTT2	REV__nc|ENSG00000133433|P0CG29|GSTT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.7869567871094	2	463.78711	925.559667	0.97648	0.00045288	-0.9771	-0.00045317	-0.00061882	-2.87E-07	463.7865642315273	71.188	1.3287	70.899	70.546	71.875	-0.28857					72	33	4	0	0	0	0.6248	1	8596	8596		73.975	0	1	6749200	+		84215	36671	58750	58842	93257	93257					0.0939094831123839
VKEKQEEDI	9	Unmodified	_VKEKQEEDI_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.295166015625	2	559.290411	1116.56627	-0.22391	-0.00012523	2.5416	0.0014215	2.3177	0.0012963	559.2922459906471	103.76	0.47316	103.76	103.43	103.9	0					14	11	2	0	0	0	0.82115	1	13317	13317		37.812	1.3648	1	44800			84216	10079	58751	58843	93258	93258					0.012647966812892264
VKEKQEEDI	9	Unmodified	_VKEKQEEDI_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	559.290411	1116.56627	-0.28143	-0.0001574	2.8517	0.0015949	2.5703	0.0014375	559.2924337453215	103.71	0.34198	103.71	103.57	103.91	0.0031357	0.084533	0.0008642	NaN	37.812	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54536			84217	10079	58751	58843							0.012647966812892264
VKEKQEEDI	9	Unmodified	_VKEKQEEDI_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	559.290411	1116.56627	0.17317	9.6851E-05	3.6199	0.0020246	3.7931	0.0021214	559.292695137368	103.82	0.44742	103.82	103.49	103.94	-0.0032196	0.18971	0.0017235	NaN	37.812	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40545			84218	10079	58751	58843							0.012647966812892264
VKEKQEEDI	9	Unmodified	_VKEKQEEDI_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	559.290411	1116.56627	0.18486	0.00010339	1.8419	0.0010302	2.0268	0.0011336	559.2913095267337	103.59	0.4165	103.46	103.28	103.69	-0.12724	-0.16833	-0.0002653	NaN	37.812	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61200			84219	10079	58751	58843							0.012647966812892264
VKEKQEEDI	9	Unmodified	_VKEKQEEDI_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.290411	1116.56627	-0.29392	-0.00016438	1.948	0.0010895	1.654	0.00092509	559.2917805695472	103.65	0.36557	103.52	103.29	103.66	-0.12783	-0.10874	-0.0001467	NaN	37.812	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44921			84220	10079	58751	58843							0.012647966812892264
VKEKQEEDI	9	Unmodified	_VKEKQEEDI_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.290411	1116.56627	0.12217	6.833E-05	1.3602	0.00076076	1.4824	0.00082909	559.2911152556551	103.67	0.35695	103.51	103.28	103.64	-0.16791	-0.1228	-0.00080414	NaN	37.812	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67397			84221	10079	58751	58843							0.012647966812892264
VKEKTYLY	8	Unmodified	_VKEKTYLY_					0	0	0			REV__ENSG00000174173|ENST00000309922|TRMT10C	REV__ENSG00000174173|ENST00000309922|TRMT10C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7586059570312	2	522.292225	1042.5699	-0.14393	-7.5171E-05	-3.4004	-0.001776	-3.5443	-0.0018512	522.2907294209373	41.671	0.46494	41.443	41.197	41.662	-0.2278					18	11	2	0	0	0	0.027866	1	3652	3652		38.806	19.446	1	332020	+		84222	26838	58752	58844	93259	93259					0.050315112458065414
VKEKVVAL	8	Unmodified	_VKEKVVAL_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.29217529296875	2	443.292028	884.569503	-0.33111	-0.00014678	0.52882	0.00023442	0.19771	8.7643E-05	443.29212234490024	33.315	1.2011	33.084	32.752	33.953	-0.23107					72	29	4	0	0	0	0.47727	1	2382	2382		87.696	21.893	1	2684100			84223	849	58753	58845	93260	93260					0.12260136316615444
VKEKVVAL	8	Unmodified	_VKEKVVAL_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	443.2920837402344	2	443.292028	884.569503	-0.60643	-0.00026882	0.68888	0.00030538	0.082453	3.6551E-05	443.2921818776006	33.289	1.2605	33.124	32.8	34.06	-0.16565					66	31	4	0	0	0	0.28835	2	2363	2351;2363		116.9	29.149	1	2973100			84224	849	58753	58845	93261;93262	93262					0.12260136316615444
VKELKRAKT	9	Unmodified	_VKELKRAKT_					0	0	0		ENSG00000196083|ENST00000447382|IL1RAP	ENSG00000196083|ENST00000447382|IL1RAP	ENSG00000196083|ENST00000447382|IL1RAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.306396484375	2	536.84549	1071.67643	-1.1256	-0.0006043	-1.6331	-0.00087672	-2.7587	-0.001481	536.8433485391515	48.089	0.29288	47.936	47.764	48.057	-0.15301					16	8	3	0	0	0	0.024511	1	4825	4825		19.104	0	1	882940			84225	9817	58754	58846	93263	93263					0.14345686530987223
VKELLSNVD	9	Unmodified	_VKELLSNVD_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.8022766113281	2	508.784764	1015.55498	-0.47643	-0.0002424	0.59959	0.00030506	0.12315	6.2659E-05	508.7847807314407	63.247	0.71067	63.247	62.811	63.522	0					32	18	3	0	0	0	0.024427	1	7321	7321		26.693	3.6504	1	1563600			84226	3557	58755	58847	93264	93264					0.047820193778079556
VKELLSNVD	9	Unmodified	_VKELLSNVD_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.784764	1015.55498	-0.056463	-2.8727E-05	-0.34991	-0.00017803	-0.40637	-0.00020676	508.78465225720714	63.552	0.56723	63.324	63.095	63.662	-0.22773	-0.01008	-0.00015685	NaN	19.997	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365760			84227	3557	58755	58847							0.047820193778079556
VKELLSNVD	9	Unmodified	_VKELLSNVD_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.784764	1015.55498	-0.24029	-0.00012225	-0.095137	-4.8404E-05	-0.33542	-0.00017066	508.78453359222135	63.63	0.56831	63.437	63.109	63.677	-0.19243	0.10323	0.0001024	NaN	19.997	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436040			84228	3557	58755	58847							0.047820193778079556
VKELLSNVD	9	Unmodified	_VKELLSNVD_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	508.784764	1015.55498	0.23687	0.00012052	-0.64665	-0.00032901	-0.40978	-0.00020849	508.78441784826225	63.68	0.71557	63.421	63.201	63.916	-0.25824	0.087582	-0.00045881	NaN	19.997	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331100			84229	3557	58755	58847							0.047820193778079556
VKELNFND	8	Unmodified	_VKELNFND_					0	0	0			REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.31829833984375	2	489.748182	977.481811	-1.2391	-0.00060682	-3.2471	-0.0015902	-4.4861	-0.0021971	489.746253509698	29.437	0.25779	29.191	29.099	29.357	-0.24524					10	5	2	0	0	0	0.027866	1	1816	1816		38.806	8.3025	1	52185	+		84230	32896	58756	58848	93265	93265					-0.007831093448089632
VKELNFND	8	Unmodified	_VKELNFND_					0	0	0			REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	489.748182	977.481811	-1.2468	-0.00061064	-6.3311	-0.0031007	-7.578	-0.0037113	489.745454661138	29.428	0.23209	29.428	29.296	29.528	0	0.082056	-0.00034567	NaN	30.504	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51112	+		84231	32896	58756	58848							-0.007831093448089632
VKELNFND	8	Unmodified	_VKELNFND_					0	0	0			REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	REV__ENST00000462207.1_1_3:52620428-52643468:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	489.748182	977.481811	-0.59322	-0.00029053	-7.1777	-0.0035153	-7.7709	-0.0038058	489.74473817532044	29.414	0.31102	29.417	29.24	29.551	0.0031376	0.071982	-0.0011749	NaN	30.504	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50059	+		84232	32896	58756	58848							-0.007831093448089632
VKEMALRKV	9	Unmodified	_VKEMALRKV_					0	0	0		ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;nc|ENSG00000144406|Q8N2C7-6|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80	ENSG00000144406|ENST00000673920|UNC80	ENSG00000144406|ENST00000673920|UNC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.3052368164062	2	537.328619	1072.64269	-0.66291	-0.0003562	0.70772	0.00038028	0.044815	2.408E-05	537.3284257614362	68.497	0.49235	68.497	68.332	68.825	0					20	12	3	0	0	0	0.024484	1	8254	8254		17.468	0	1	264690			84233	5735	58757	58849	93266	93266					0.10926941767570497
VKENGSLLSH	10	Unmodified	_VKENGSLLSH_					0	0	0			REV__CON__Q7Z3Y9	REV__CON__Q7Z3Y9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.2935180664062	2	542.293288	1082.57202	-1.5645	-0.00084841	1.124	0.00060956	-0.44045	-0.00023885	542.2939208376687	39.531	0.98125	39.432	39.127	40.108	-0.098755					72	26	4	0	0	0	0.14896	1	3419	3419		127.46	26.209	1	6546900	+	+	84234	19600	58758	58850	93267	93267					0.03403939983627424
VKETGSELL	9	Unmodified	_VKETGSELL_					0	0	0			REV__nc|ENSG00000111266|Q9BY84-2|DUSP16	REV__nc|ENSG00000111266|Q9BY84-2|DUSP16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.2712707519531	2	488.27149	974.528426	2.1849	0.0010668	-2.4506	-0.0011965	-0.26564	-0.0001297	488.27014538848647	24.051	0.61454	23.87	23.626	24.241	-0.18089					29	13	3	0	0	0	0.59099	1	989	989		53.351	0	1	509290	+		84235	19722	58759	58851	93268	93268					0.0401433048649551
VKETVHNAF	9	Unmodified	_VKETVHNAF_					0	0	0		nc|ENSG00000124678|Q8WWU5-3|TCP11;nc|ENSG00000124678|Q8WWU5-6|TCP11;nc|ENSG00000124678|Q8WWU5-4|TCP11;ENSG00000124678|ENST00000311875|TCP11;nc|ENSG00000124678|Q8WWU5-5|TCP11;nc|ENSG00000124678|Q8WWU5-7|TCP11;nc|ENSG00000124678|Q8WWU5-2|TCP11;ENST00000510465.5_1_6:35096565-35108647:-|nuORF;ENST00000505335.1_1_6:35096565-35109010:-|nuORF;ENST00000479418.6_1_6:35096079-35103912:-|nuORF	nc|ENSG00000124678|Q8WWU5-3|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2669677734375	2	522.777274	1043.53999	-0.6521	-0.0003409	-3.6186	-0.0018917	-4.2707	-0.0022326	522.7753712239223	26.373	0.6111	26.35	26.124	26.735	-0.023087					22	14	3	0	0	0	0.024381	1	1365	1365		45.952	5.3793	1	220260			84236	4068	58760	58852	93269	93269					0.019965723004588654
VKEVEMLI	8	Unmodified	_VKEVEMLI_					0	0	0			REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2595520019531	2	480.775354	959.536154	0.58552	0.00028151	3.3479	0.0016096	3.9334	0.0018911	480.77691422615976	20.831	0.67881	20.664	20.444	21.123	-0.16774					22	13	2	0	0	0	0.027866	1	596	596		24.203	0	1	288100	+		84237	19863	58761	58853	93270	93270					0.05476766482399853
VKEVEMLI	8	Unmodified	_VKEVEMLI_					0	0	0			REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	REV__ENST00000490762.5_1_16:240794-277276:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	480.775354	959.536154	0.38697	0.00018605	3.8101	0.0018318	4.1971	0.0020178	480.77708001960764	20.919	0.44139	20.723	20.533	20.975	-0.19577	0.029682	0.00033601	NaN	24.203	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97236	+		84238	19863	58761	58853							0.05476766482399853
VKEVKKDL	8	Unmodified	_VKEVKKDL_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.8001403808594	2	479.800217	957.585882	0.13205	6.3358E-05	-0.95677	-0.00045906	-0.82472	-0.0003957	479.7997429560041	27.15	1.8721	27.15	26.741	28.613	0					109	47	5	0	0	0	0.23402	1	1440	1440		134.81	3.7794	1	9170000	+		84239	20984	58762	58854	93271	93271					0.1053921748269886
VKEVKKDL	8	Unmodified	_VKEVKKDL_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.800048828125	2	479.800217	957.585882	-0.20709	-9.9361E-05	-0.63012	-0.00030233	-0.83721	-0.00040169	479.7998909925094	27.099	1.5372	27.086	26.828	28.365	-0.012983					101	39	5	0	0	0	0.30694	1	1425	1425		110.12	8.5192	1	8444300	+		84240	20984	58762	58854	93272	93272					0.1053921748269886
VKEVKKDL	8	Unmodified	_VKEVKKDL_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.800048828125	2	479.800217	957.585882	-1.0179	-0.00048839	0.16014	7.6833E-05	-0.85776	-0.00041155	479.8002873956686	26.965	1.9416	27.046	26.758	28.699	0.081293					104	49	4	0	0	0	0.20308	2	1373	1363;1373		139.97	8.7186	1	11813000	+		84241	20984	58762	58854	93273;93274	93274					0.1053921748269886
VKEVKKDL	8	Unmodified	_VKEVKKDL_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.8002014160156	2	479.800217	957.585882	0.033614	1.6128E-05	-0.56025	-0.00026881	-0.52663	-0.00025268	479.79991854114894	27.258	1.2599	27.016	26.744	28.004	-0.24217					55	29	4	0	0	0	0.23402	3	1477	1477;1487;1499		134.81	19.374	1	4984400	+		84242	20984	58762	58854	93275;93276;93277	93275					0.1053921748269886
VKEVKKDL	8	Unmodified	_VKEVKKDL_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.8001403808594	2	479.800217	957.585882	-0.53026	-0.00025442	-0.069474	-3.3334E-05	-0.59973	-0.00028775	479.80016106242334	27.079	1.6197	26.911	26.594	28.213	-0.16816					69	38	4	0	0	0	0.20308	3	1456	1446;1456;1468		139.97	5.2724	1	7179200	+		84243	20984	58762	58854	93278;93279;93280	93279					0.1053921748269886
VKEVKKDL	8	Unmodified	_VKEVKKDL_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.8001403808594	2	479.800217	957.585882	-0.049965	-2.3973E-05	-0.65426	-0.00031391	-0.70422	-0.00033789	479.79994306575855	27.321	1.3138	27.164	26.844	28.158	-0.15664					56	31	4	0	0	0	0.078056	2	1468	1468;1480		166.68	6.6819	1	9005200	+		84244	20984	58762	58854	93281;93282	93281					0.1053921748269886
VKFFKSKP	8	Unmodified	_VKFFKSKP_					0	0	0		nc|ENSG00000170473|Q9BRP8-2|PYM1;ENSG00000170473|ENST00000408946|PYM1	nc|ENSG00000170473|Q9BRP8-2|PYM1	nc|ENSG00000170473|Q9BRP8-2|PYM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.2728576660156	2	490.80002	979.585488	-0.32074	-0.00015742	-3.9332	-0.0019304	-4.2539	-0.0020878	490.79808112933455	31.108	0.43904	30.923	30.66	31.099	-0.18503					16	10	2	0	0	0	0.027866	1	2040	2040		35.618	20.954	1	256150			84245	8045	58763	58855	93283	93283					0.09487842553505743
VKFGAWYCL	9	Unmodified	_VKFGAWYCL_					0	0	0			REV__ENST00000550078.2_2_1:203770869-203770902:+|nuORF	REV__ENST00000550078.2_2_1:203770869-203770902:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.8350219726562	2	543.775688	1085.53682	1.2429	0.00067587	-2.0885	-0.0011357	-0.8456	-0.00045982	543.7743086394183	19.236	0.34602	19.002	18.78	19.126	-0.23345					11	6	2	0	0	0	0.024386	1	372	372		52.299	0	1	42518	+		84246	34897	58764	58856	93284	93284					-0.0025239407791559643
VKFIHFPTSV	10	Unmodified	_VKFIHFPTSV_					0	0	0			REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	587.7744750976562	2	587.834591	1173.65463	-0.47856	-0.00028131	0.6297	0.00037016	0.15114	8.8847E-05	587.8347518254207	79.814	0.58731	79.663	79.278	79.866	-0.15051					30	13	3	0	0	0	0.03519	1	9556	9556		23.523	0	1	187010	+		84247	36732	58765	58857	93285	93285					0.07474881782400189
VKFLDAYAE	9	Unmodified	_VKFLDAYAE_					0	0	0		ENST00000566701.5_1_1:155184905-155187601:-|nuORF;nc|ENSG00000177628|P04062-3|GBA1;ENST00000486197.5_1_1:155184905-155187358:-|nuORF;nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1;ENST00000473223.5_1_1:155184463-155187072:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.355224609375	2	528.274032	1054.53351	-1.2647	-0.0006681	0.75703	0.00039992	-0.50766	-0.00026818	528.2742702887832	50.237	0.52956	50.237	49.949	50.479	0					29	15	2	0	0	0	0.024457	1	5265	5265		10.265	0	1	370230			84248	16947	58766	58858	93286	93286					0.008426343490782529
VKFLDKPMR	9	Unmodified	_VKFLDKPMR_					0	0	0			REV__ENST00000445681.1_1_7:65958944-65960296:+|nuORF	REV__ENST00000445681.1_1_7:65958944-65960296:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3299560546875	2	567.328619	1132.64269	0.14889	8.447E-05	1.9222	0.0010905	2.0711	0.001175	567.3295598013149	89.096	1.6828	88.959	88.315	89.998	-0.13762					153	39	5	0	0	0	0.99726	1	10837	10837		20.947	0	1	5699400	+		84249	32620	58767	58859	93287	93287					0.08166941767581193
VKFLETLEL	9	Unmodified	_VKFLETLEL_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.2865600585938	2	546.320983	1090.62741	-0.6856	-0.00037456	-2.7547	-0.001505	-3.4403	-0.0018795	546.3200108115283	86.139	1.0188	86.094	85.535	86.554	-0.045097					40	23	2	0	0	0	0.020546	1	10728	10728		108.09	28.636	1	196350			84250	8503	58768	58860	93288	93288					0.0857235345135905
VKFLETLEL	9	Unmodified	_VKFLETLEL_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.320983	1090.62741	-1.5116	-0.00082579	-0.66529	-0.00036346	-2.1768	-0.0011893	546.3205378585579	86.224	0.68472	86.248	85.778	86.462	0.023666	0.064981	0.001548	NaN	108.09	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213810			84251	8503	58768	58860							0.0857235345135905
VKFLETLEL	9	Unmodified	_VKFLETLEL_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.320983	1090.62741	-0.21458	-0.00011723	-2.4506	-0.0013388	-2.6652	-0.0014561	546.3196693149933	86.262	0.74165	86.125	85.789	86.53	-0.13734	-0.058056	-0.00040276	NaN	108.09	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247320			84252	8503	58768	58860							0.0857235345135905
VKFNKTISL	9	Unmodified	_VKFNKTISL_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.30322265625	2	525.321317	1048.62808	-0.32097	-0.00016861	-0.068833	-3.616E-05	-0.3898	-0.00020477	525.3209435272396	64.239	0.32825	63.982	63.796	64.124	-0.25727					11	8	2	0	0	0	0.024017	1	7489	7489		56.434	0	1	82944	+		84253	22585	58769	58861	93289	93289					0.1057119289109778
VKFQFQRF	8	Unmodified	_VKFQFQRF_					0	0	0		GRIK4|p.A169Sfs*28|1|0.72|ENSG00000149403|chr11:120819910-120819911|-/A|frameshift_variant;GRIK4|p.D470Mfs*20|1|0.47|ENSG00000149403|chr11:120905422-120905422|G/-|frameshift_variant;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4	REV__ENSG00000171793|ENST00000650070|CTPS1	REV__ENSG00000171793|ENST00000650070|CTPS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.3057250976562	2	550.306001	1098.59745	1.4238	0.00078355	-1.8933	-0.0010419	-0.46949	-0.00025836	550.3047371925553	16.582	0.27276	16.429	16.294	16.567	-0.15376					15	7	3	0	0	0	1.0574	1	76	76		26.796	3.7536	1	64510			84254	26600	58770	58862	93290	93290					0.052094592967023345
VKFQPLVTTT	10	Unmodified	_VKFQPLVTTT_					0	0	0			REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3294067382812	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.1088	1	11152	11152		31.53	3.4483	1	4134200	+		84255	31340	58771	58863	93291	93291					0.08819158199935373
VKFQPLVTTT	10	Unmodified	_VKFQPLVTTT_					0	0	0			REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.0992	2	11221	11221;11257		32.812	3.6424	1	17705000	+		84256	31340	58771	58863	93292;93293	93292					0.08819158199935373
VKFQPLVTTT	10	Unmodified	_VKFQPLVTTT_					0	0	0			REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0393	3	11223	11223;11345;11382		40.778	6.2817	1	19210000	+		84257	31340	58771	58863	93294;93295;93296	93294					0.08819158199935373
VKFTRLGSI	9	Unmodified	_VKFTRLGSI_					0	0	0			REV__SCN10A|p.R218K|1|0.33|ENSG00000185313|chr3:38763543-38763543|C/T|missense_variant	REV__SCN10A|p.R218K|1|0.33|ENSG00000185313|chr3:38763543-38763543|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.27392578125	2	510.813659	1019.61277	0.020729	1.0589E-05	-1.4377	-0.00073442	-1.417	-0.00072383	510.8125635150565	90.453	0.74521	90.466	90.082	90.827	0.013443					48	17	4	0	0	0	0.024506	1	11405	11405		23.042	0	1	1169500	+		84258	37465	58772	58864	93297	93297					0.10374326093892705
VKFTVQTK	8	Unmodified	_VKFTVQTK_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;nc|ENSG00000172803|Q86XE0-2|SNX32;ENST00000530101.5_1_11:65601488-65618753:+|nuORF;ENST00000531503.5_1_11:65603108-65617212:+|nuORF;ENST00000524729.1_1_11:65601488-65617212:+|nuORF;ENST00000533298.5_1_11:65601362-65617723:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.75830078125	2	475.78711	949.559667	-0.19242	-9.1549E-05	0.45097	0.00021457	0.25856	0.00012302	475.78708877209925	36.735	0.63952	36.519	36.286	36.926	-0.21661					35	15	4	0	0	0	0.027866	1	2956	2956		18.324	6.8134	1	483400			84259	8311	58773	58865	93298	93298					0.08286948311240394
VKFTVQTK	8	Unmodified	_VKFTVQTK_					0	0	0		ENSG00000172803|ENST00000308342|SNX32;nc|ENSG00000172803|Q86XE0-2|SNX32;ENST00000530101.5_1_11:65601488-65618753:+|nuORF;ENST00000531503.5_1_11:65603108-65617212:+|nuORF;ENST00000524729.1_1_11:65601488-65617212:+|nuORF;ENST00000533298.5_1_11:65601362-65617723:+|nuORF	ENSG00000172803|ENST00000308342|SNX32	ENSG00000172803|ENST00000308342|SNX32	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	475.78711	949.559667	0.3768	0.00017928	-0.34496	-0.00016413	0.031837	1.5147E-05	475.7867395863711	36.751	0.51563	36.558	36.335	36.851	-0.193	0.033754	3.6303E-05	NaN	7.1934	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490850			84260	8311	58773	58865							0.08286948311240394
VKFVRRTE	8	Unmodified	_VKFVRRTE_					0	0	0			REV__ENSG00000275663|ENST00000611444|H4C7	REV__ENSG00000275663|ENST00000611444|H4C7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.8087768554688	2	517.808908	1033.60326	-0.73098	-0.00037851	0.33756	0.00017479	-0.39342	-0.00020372	517.8089053448344	38.004	0.95093	37.782	37.466	38.417	-0.22148					60	26	4	0	0	0	0.78609	1	3084	3084		60.294	1.512	1	2407700	+		84261	29192	58774	58866	93299	93299					0.08780557808381673
VKGAINRQ	8	Unmodified	_VKGAINRQ_					0	0	0			REV__ENSG00000147316|ENST00000344683|MCPH1	REV__ENSG00000147316|ENST00000344683|MCPH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2921142578125	2	443.266876	884.519199	0.33646	0.00014914	-3.5246	-0.0015623	-3.1881	-0.0014132	443.26469713983715	36.881	0.42137	36.818	36.669	37.091	-0.063389					20	10	3	0	0	0	0.027866	1	2959	2959		57.811	7.7867	1	138130	+		84262	24547	58775	58867	93300	93300					0.07232026711471917
VKGAKPHFI	9	Unmodified	_VKGAKPHFI_					0	0	0		ENSG00000132330|ENST00000254663|SCLY;ENST00000482031.5_1_2:238973007-238991399:+|nuORF;nc|ENSG00000132330|Q96I15-2|SCLY	ENSG00000132330|ENST00000254663|SCLY	ENSG00000132330|ENST00000254663|SCLY	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.80389404296875	2	498.803094	995.591636	-0.076385	-3.8101E-05	0.61262	0.00030558	0.53624	0.00026748	498.8033988625939	52.928	2.1732	52.928	51.836	54.01	0					154	58	5	0	0	0	0.83071	1	5780	5780		37.159	3.6435	1	12555000			84263	4593	58776	58868	93301	93301					0.09366360785031702
VKGCPFTSF	9	Unmodified	_VKGCPFTSF_					0	0	0		ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.24163818359375	2	493.244221	984.473888	-0.11378	-5.6119E-05	-3.7773	-0.0018631	-3.8911	-0.0019193	493.2421873255801	17.499	0.69769	17.293	17.116	17.813	-0.20669					27	13	3	0	0	0	0.67308	1	199	199		47.916	1.9636	1	247480			84264	1517	58777	58869	93302	93302					-0.018969598659282383
VKGDTRAYR	9	Unmodified	_VKGDTRAYR_					0	0	0			REV__ENST00000470961.1_1_3:101405187-101405544:-|nuORF	REV__ENST00000470961.1_1_3:101405187-101405544:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2926025390625	2	533.293622	1064.57269	-0.59478	-0.00031719	0.13046	6.9572E-05	-0.46432	-0.00024762	533.2935839798809	24.626	0.56864	24.452	24.252	24.821	-0.17484					36	12	5	0	0	0	0.96322	1	1111	1111		27.882	3.3631	1	1079400	+		84265	22119	58778	58870	93303	93303					0.042987794233113164
VKGFLGIVI	9	Unmodified	_VKGFLGIVI_					0	0	0			REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.26611328125	2	473.310221	944.605889	2.2546	0.0010671	-2.0565	-0.00097338	0.19806	9.3743E-05	473.3089587995474	74.043	0.55309	74.043	73.871	74.424	0					27	12	3	0	0	0	0.024412	1	9041	9041		40.573	7.057	1	193320	+		84266	26304	58779	58871	93304	93304					0.1313701321331564
VKGFLGIVI	9	Unmodified	_VKGFLGIVI_					0	0	0			REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.26641845703125	2	473.310221	944.605889	-0.13563	-6.4196E-05	-0.10444	-4.9432E-05	-0.24007	-0.00011363	473.3099937021413	74.006	0.59985	74.016	73.881	74.481	0.0096512					24	13	2	0	0	0	0.024386	1	8983	8983		42.474	7.2737	1	286090	+		84267	26304	58779	58871	93305	93305					0.1313701321331564
VKGGRHAP	8	Unmodified	_VKGGRHAP_					0	0	0			REV__ENST00000361317.6_1_20:62688688-62688904:+|nuORF	REV__ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	411.2408142089844	2	411.240661	820.46677	3.5833	0.0014736	-3.1692	-0.0013033	0.41411	0.0001703	411.23922088930476	19.164	0.83446	19.23	18.995	19.829	0.066195					29	16	3	0	0	0	1.0239	1	346	346		33.516	6.7195	1	274850	+		84268	30936	58780	58872	93306	93306					0.04935488368505503
VKGGRRLL	8	Unmodified	_VKGGRRLL_					0	0	0			REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF	REV__ENST00000584588.5_1_17:38027782-38031519:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.753662109375	2	449.800886	897.587219	0.93743	0.00042166	-4.2936	-0.0019313	-3.3562	-0.0015096	449.79900570897667	65.741	0.11707	65.741	65.643	65.76	0					4	2	2	0	0	0	0.027866	1	7797	7797		14.664	0.88877	1	21313	+		84269	35564	58781	58873	93307	93307					0.1343289636214422
VKGGVQHER	9	Unmodified	_VKGGVQHER_					0	0	0			REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|53|2|anti-sense	REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.0958511358986025|0.476847412502663|1.2|522.0|53|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.28070068359375	2	505.280515	1008.54648	-1.3277	-0.00067085	1.0849	0.0005482	-0.24274	-0.00012265	505.2809940202597	24.724	1.0357	24.677	24.264	25.3	-0.047148					58	23	4	0	0	0	0.17822	1	1093	1093		93.195	5.499	1	1670000	+		84270	37611	58782	58874	93308	93308					0.04254510251848842
VKGHFPCL	8	Unmodified	_VKGHFPCL_					0	0	0			REV__ENST00000374358.4_1_1:25687736-25687844:+|nuORF	REV__ENST00000374358.4_1_1:25687736-25687844:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.76080322265625	2	450.741648	899.468743	0.1214	5.4722E-05	-4.0544	-0.0018275	-3.933	-0.0017728	450.73978697909865	39.062	0.48943	39.062	38.935	39.425	0					18	13	2	0	0	0	0.027866	1	3359	3359		19.36	0	1	286880	+		84271	31293	58783	58875	93309	93309					0.014987810620937125
VKGILMPQ	8	Unmodified	_VKGILMPQ_					0	0	0		ENST00000444363.5_1_7:87488057-87505510:-|nuORF	ENST00000444363.5_1_7:87488057-87505510:-|nuORF	ENST00000444363.5_1_7:87488057-87505510:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.29217529296875	2	443.264956	884.515359	-0.090954	-4.0317E-05	1.2098	0.00053627	1.1189	0.00049596	443.264807595914	36.988	0.2769	37.02	36.797	37.074	0.032269					8	6	2	0	0	0	0.027866	1	2902	2902		42.474	0	1	59182			84272	14420	58784	58876	93310	93310					0.06848220893391499
VKGISKVGI	9	Unmodified	_VKGISKVGI_					0	0	0		ENST00000460288.1_1_3:186257375-186257486:-|nuORF	ENST00000460288.1_1_3:186257375-186257486:-|nuORF	ENST00000460288.1_1_3:186257375-186257486:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7686462402344	2	450.797478	899.580402	-0.22037	-9.9343E-05	0.61788	0.00027854	0.39751	0.0001792	450.7974779125163	35.741	0.50951	35.529	35.274	35.783	-0.21246					30	13	4	0	0	0	0.023635	1	2694	2694		47.657	5.2612	1	933720			84273	14649	58785	58877	93311	93311					0.12659538690911631
VKGISKVGI	9	Unmodified	_VKGISKVGI_					0	0	0		ENST00000460288.1_1_3:186257375-186257486:-|nuORF	ENST00000460288.1_1_3:186257375-186257486:-|nuORF	ENST00000460288.1_1_3:186257375-186257486:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.797478	899.580402	-0.31293	-0.00014107	0.81685	0.00036824	0.50392	0.00022717	450.79755743329906	35.734	0.44569	35.529	35.306	35.752	-0.20518	0.022897	7.4073E-05	NaN	47.657	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	859330			84274	14649	58785	58877							0.12659538690911631
VKGISKVGI	9	Unmodified	_VKGISKVGI_					0	0	0		ENST00000460288.1_1_3:186257375-186257486:-|nuORF	ENST00000460288.1_1_3:186257375-186257486:-|nuORF	ENST00000460288.1_1_3:186257375-186257486:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	450.797478	899.580402	-0.20612	-9.2918E-05	0.80998	0.00036514	0.60386	0.00027222	450.7976110515099	35.647	0.45995	35.46	35.26	35.72	-0.18675	-0.045973	6.7876E-05	NaN	47.657	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850910			84275	14649	58785	58877							0.12659538690911631
VKGKATAR	8	Unmodified	_VKGKATAR_					0	0	0		ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	ENSG00000149488|ENST00000358864|TMC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	415.7220153808594	2	415.763969	829.513385	0.22492	9.3514E-05	4.017	0.0016701	4.2419	0.0017636	415.7658903839609	42.449	0.17032	42.317	42.216	42.386	-0.13219					6	4	2	0	0	0	0.027866	1	3889	3889		12.959	0	1	69684			84276	6095	58786	58878	93312	93312					0.09180928199793925
VKGKKNIRA	9	Unmodified	_VKGKKNIRA_					0	0	0		nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG;ENST00000483659.5_1_2:85622736-85628768:-|nuORF	nc|ENSG00000042493|P40121-2|CAPG	nc|ENSG00000042493|P40121-2|CAPG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.3157043457031	2	507.33255	1012.65055	0.25291	0.00012831	2.1376	0.0010845	2.3905	0.0012128	507.3342050554702	69.281	0.33774	68.988	68.753	69.09	-0.29291					11	8	2	0	0	0	0.024541	1	8315	8315		11.511	0	1	71914			84277	1080	58787	58879	93313	93313					0.1447283707935867
VKGKRESEI	9	Unmodified	_VKGKRESEI_					0	0	0		ENSG00000204296|ENST00000533191|TSBP1;nc|ENSG00000204296|Q5SRN2-2|TSBP1;nc|ENSG00000204296|Q5SRN2|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3036499023438	2	523.303655	1044.59276	0.12304	6.4388E-05	-0.40431	-0.00021158	-0.28127	-0.00014719	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	0.80003	1	10471	10471		39.253	1.4413	1	3963900			84278	10325	58788	58880	93314	93314					0.07224530363282611
VKGKRESEI	9	Unmodified	_VKGKRESEI_					0	0	0		ENSG00000204296|ENST00000533191|TSBP1;nc|ENSG00000204296|Q5SRN2-2|TSBP1;nc|ENSG00000204296|Q5SRN2|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	ENSG00000204296|ENST00000533191|TSBP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3045043945312	2	523.303655	1044.59276	-0.97748	-0.00051152	1.0095	0.00052829	0.032046	1.677E-05	523.3040834261025	89.7	0.55897	89.537	89.215	89.774	-0.1626					23	12	2	0	0	0	0.89441	1	10924	10924		32.812	4.5581	1	949050			84279	10325	58788	58880	93315	93315					0.07224530363282611
VKGLGQSYI	9	Unmodified	_VKGLGQSYI_					0	0	0		ENSG00000129990|ENST00000354308|SYT5	ENSG00000129990|ENST00000354308|SYT5	ENSG00000129990|ENST00000354308|SYT5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7764587402344	2	482.776742	963.538931	0.52381	0.00025288	-0.19218	-9.2781E-05	0.33163	0.0001601	482.776321729423	97.206	1.4382	97.215	96.751	98.189	0.0089111					62	32	3	0	0	0	0.96322	1	12370	12370		27.882	1.0861	1	987190			84280	4377	58789	58881	93316	93316					0.05570357931560466
VKGLLGGLL	9	Unmodified	_VKGLLGGLL_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.779541015625	2	435.294571	868.574589	-0.053809	-2.3423E-05	-0.47403	-0.00020634	-0.52784	-0.00022976	435.2941765877244	41.982	0.39466	41.859	41.642	42.037	-0.12299					12	10	2	0	0	0	0.024354	1	3764	3764		47.916	14.4	1	62134	+		84281	28396	58790	58882	93317	93317					0.13504440179247013
VKGLLGGLL	9	Unmodified	_VKGLLGGLL_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.7804870605469	2	435.294571	868.574589	-0.19751	-8.5974E-05	-0.39138	-0.00017037	-0.58889	-0.00025634	435.2941814142495	46.133	0.46033	45.872	45.739	46.2	-0.26118					15	11	2	0	0	0	0.024436	1	4453	4453		30.504	15.84	1	113180	+		84282	28396	58790	58882	93318	93318					0.13504440179247013
VKGLLGGLL	9	Unmodified	_VKGLLGGLL_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	435.294571	868.574589	0.14103	6.1388E-05	-0.4467	-0.00019444	-0.30567	-0.00013306	435.2942314514749	41.511	0.38203	41.388	41.155	41.537	-0.12318	-0.27879	-1.2815E-05	NaN	38.806	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109340	+		84283	28396	58790	58882							0.13504440179247013
VKGLLGGLL	9	Unmodified	_VKGLLGGLL_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	435.294571	868.574589	0.38524	0.00016769	-0.378	-0.00016454	0.0072414	3.1521E-06	435.29417789661755	41.549	0.49385	41.572	41.324	41.818	0.023006	-0.094844	4.6994E-05	NaN	38.806	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89505	+		84284	28396	58790	58882							0.13504440179247013
VKGLLGGLL	9	Unmodified	_VKGLLGGLL_					0	0	0			REV__ENSG00000198183|ENST00000354297|BPIFA1	REV__ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	435.294571	868.574589	0.2704	0.0001177	-0.51406	-0.00022377	-0.24366	-0.00010606	435.2941253182401	42.078	0.20333	41.847	41.761	41.965	-0.23029	0.18107	-7.1465E-05	NaN	38.806	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73407	+		84285	28396	58790	58882							0.13504440179247013
VKGLQAQIA	9	Unmodified	_VKGLQAQIA_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000435622.1_1_22:44963433-44963604:+|nuORF;ENST00000565278.1_1_16:72763101-72763278:+|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF;ENST00000458108.1_1_3:32300804-32301218:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.7823791503906	2	464.284734	926.554916	-0.57694	-0.00026786	1.079	0.00050094	0.50202	0.00023308	464.2848471722407	45.748	0.96753	45.596	45.309	46.277	-0.15156					47	27	3	0	0	0	0.024506	1	4499	4499		23.042	0	1	1089600			84286	3084;15898	58791	58883	93319	93319					0.08870064168468161
VKGLQKTQ	8	Unmodified	_VKGLQKTQ_					0	0	0			REV__ENSG00000159267|ENST00000674895|HLCS	REV__ENSG00000159267|ENST00000674895|HLCS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.22857666015625	2	451.276909	900.539266	-0.14031	-6.3317E-05	2.9014	0.0013093	2.7611	0.001246	451.27774999664626	102.78	0.90065	102.78	102.57	103.47	0					26	21	2	0	0	0	0.027866	1	13160	13160		15.642	0	1	200180	+		84287	25246	58792	58884	93320	93320					0.08501777651417797
VKGLSWMLA	9	Unmodified	_VKGLSWMLA_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.27032470703125	2	502.783513	1003.55247	-0.32564	-0.00016372	2.327	0.00117	2.0014	0.0010063	502.7854666652562	39.967	0.31018	39.742	39.581	39.891	-0.225					12	7	2	0	0	0	0.024487	1	3394	3394		24.203	6.8378	1	90304	+		84288	21408	58793	58885	93321	93321					0.05083892439165538
VKGMLDNPN	9	Unmodified	_VKGMLDNPN_					0	0	0		ENSG00000171914|ENST00000636159|TLN2;ENST00000489129.5_1_15:63032816-63046163:+|nuORF	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7973937988281	2	494.250034	986.485516	-0.50951	-0.00025182	-3.3419	-0.0016517	-3.8514	-0.0019036	494.2483998690501	50.687	0.56138	50.768	50.51	51.071	0.08099					24	15	2	0	0	0	0.024205	1	5299	5299		53.351	9.2347	1	337620			84289	8217	58794	58886	93322	93322					-0.008267628425983276
VKGMLDNPN	9	Unmodified	_VKGMLDNPN_					0	0	0		ENSG00000171914|ENST00000636159|TLN2;ENST00000489129.5_1_15:63032816-63046163:+|nuORF	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.250034	986.485516	0.0077819	3.8462E-06	-3.726	-0.0018416	-3.7182	-0.0018377	494.2480637361582	50.771	0.59467	50.66	50.379	50.973	-0.11163	-0.20132	-7.7037E-05	NaN	53.351	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	830250			84290	8217	58794	58886							-0.008267628425983276
VKGMLDNPN	9	Unmodified	_VKGMLDNPN_					0	0	0		ENSG00000171914|ENST00000636159|TLN2;ENST00000489129.5_1_15:63032816-63046163:+|nuORF	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.250034	986.485516	-0.49192	-0.00024313	-3.1203	-0.0015422	-3.6122	-0.0017853	494.2486759621641	51.438	0.23521	51.161	51.078	51.313	-0.27643	0.30033	0.00052169	NaN	53.351	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63159			84291	8217	58794	58886							-0.008267628425983276
VKGNPHTV	8	Unmodified	_VKGNPHTV_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2386779785156	2	426.240327	850.466101	0.013817	5.8894E-06	-4.4399	-0.0018925	-4.4261	-0.0018866	426.23842914859904	58.007	0.29911	57.829	57.675	57.974	-0.17775					14	7	3	0	0	0	1.043	1	6373	6373		30.504	5.0535	1	1904600			84292	9876	58795	58887	93323	93323					0.03488648928794191
VKGPPHGDFLA	11	Unmodified	_VKGPPHGDFLA_					0	0	0			REV__ENSG00000104529|ENST00000618139|EEF1D	REV__ENSG00000104529|ENST00000618139|EEF1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.7783203125	2	569.306198	1136.59784	-0.0023502	-1.338E-06	-3.9056	-0.0022235	-3.9079	-0.0022248	569.3040464725138	32.521	0.40873	32.284	32.13	32.539	-0.23666					19	9	3	0	0	0	0.024727	1	2250	2250		33.922	15.597	1	361560	+		84293	21450	58796	58888	93324	93324					0.03500834225928884
VKGPRSSPAL	10	Unmodified	_VKGPRSSPAL_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.777587890625	2	506.300916	1010.58728	-1.0805	-0.00054704	0.57082	0.00028901	-0.50965	-0.00025804	506.30098837857327	28.328	0.88083	28.328	28.151	29.032	0					23	20	2	0	0	0	0.03519	1	1707	1707		56.721	6.6965	1	193750			84294	790	58797	58889	93325	93325					0.08240851571463281
VKGPRSSPAL	10	Unmodified	_VKGPRSSPAL_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.300916	1010.58728	-0.60149	-0.00030454	-0.050884	-2.5763E-05	-0.65238	-0.0003303	506.30066196289977	28.305	1.0069	28.301	28.04	29.047	-0.0042019	0.037487	-9.8297E-05	NaN	56.721	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185030			84295	790	58797	58889							0.08240851571463281
VKGPRSSPAL	10	Unmodified	_VKGPRSSPAL_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.300916	1010.58728	-0.32699	-0.00016555	-0.41539	-0.00021031	-0.74238	-0.00037587	506.30056516602843	28.081	0.58084	28.161	27.871	28.452	0.080811	-0.1019	-0.00046739	NaN	56.721	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198160			84296	790	58797	58889							0.08240851571463281
VKGQDKVK	8	Unmodified	_VKGQDKVK_					0	0	0		ENSG00000124102|ENST00000243924|PI3	ENSG00000124102|ENST00000243924|PI3	ENSG00000124102|ENST00000243924|PI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.23040771484375	2	451.276909	900.539266	-0.22525	-0.00010165	-0.83964	-0.00037891	-1.0649	-0.00048056	451.27654372051956	26.945	0.24853	26.932	26.745	26.994	-0.012983					6	5	2	0	0	0	0.027866	1	1415	1415		18.324	0	1	33944			84297	4009	58798	58890	93326	93326					0.08501777651417797
VKGQEVRK	8	Unmodified	_VKGQEVRK_					0	0	0		nc|ENSG00000130830|Q00013-2|MPP1;nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-2|MPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.7667236328125	2	472.287808	942.561064	1.3078	0.00061766	2.9236	0.0013808	4.2314	0.0019985	472.2890222812131	71.278	0.5541	70.989	70.719	71.273	-0.28858					22	13	2	0	0	0	0.027866	1	8625	8625		38.806	4.6336	1	328040			84298	4469;14971	58799	58891	93327	93327					0.0874858239999412
VKGQGTICWVD	11	Unmodified	_VKGQGTICWVD_					0	0	0		nc|ENSG00000065485|Q14554-2|PDIA5;ENSG00000065485|ENST00000316218|PDIA5	nc|ENSG00000065485|Q14554-2|PDIA5	nc|ENSG00000065485|Q14554-2|PDIA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.90374755859375	3	402.537624	1204.59104	0.40847	0.00016443	-1.0822	-0.00043561	-0.67369	-0.00027119	402.5390930845327	30.801	0.33954	30.622	30.41	30.75	-0.17818					17	7	3	0	0	0	0.024756	1	1965	1965		15.337	0	1	54134			84299	1304	58800	58892	93328	93328					-0.003068467169896394
VKGQSKHS	8	Unmodified	_VKGQSKHS_					0	0	0			REV__ENST00000496081.5_1_6:29912565-29912706:+|nuORF	REV__ENST00000496081.5_1_6:29912565-29912706:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.2409362792969	2	435.743234	869.471915	0.0696	3.0328E-05	0.11048	4.8141E-05	0.18008	7.8469E-05	435.7429833560068	32.273	0.65446	32.336	31.961	32.616	0.062885					29	16	3	0	0	0	0.027866	1	2144	2144		16.473	4.2663	1	485950	+		84300	33816	58801	58893	93329	93329					0.03195747440474861
VKGRCMLIS	9	Unmodified	_VKGRCMLIS_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7890930175781	2	503.780447	1005.54634	-0.37231	-0.00018756	-2.504	-0.0012615	-2.8763	-0.001449	503.778450844955	28.004	0.37537	28.085	27.832	28.208	0.08099					16	8	3	0	0	0	0.024323	1	1508	1508		44.117	0	1	80694			84301	5232	58802	58894	93330	93330					0.0437905093599511
VKGRLFSYV	9	Unmodified	_VKGRLFSYV_					0	0	0			REV__ENST00000489585.5_1_1:236046795-236046873:-|nuORF	REV__ENST00000489585.5_1_1:236046795-236046873:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.812255859375	2	534.813659	1067.61277	2.5486	0.001363	3.585	0.0019173	6.1335	0.0032803	534.8153469571226	19.081	0.29606	19.146	18.993	19.289	0.064991					9	5	2	0	0	0	0.024523	1	341	341		21.96	0	1	18958	+		84302	33672	58803	58895	93331	93331					0.08166326093896714
VKGRQTPKHI	10	Unmodified	_VKGRQTPKHI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;BRCA2|p.Y839Ifs*42|1|0.11|ENSG00000139618|chr13:32336864-32336865|-/A|frameshift_variant;BRCA2|p.S727Gfs*5|1|0.11|ENSG00000139618|chr13:32336533-32336534|-/GGTTC|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	582.3533935546875	2	582.354014	1162.69348	-1.4953	-0.00087077	0.5142	0.00029945	-0.98105	-0.00057132	582.3541963101079	102.27	0.85596	102.27	101.95	102.81	0					90	19	7	0	0	0	1.118	2	13110	13110;13122		30.318	3.6248	1	8600900			84303	5346	58804	58896	93332;93333	93332					0.11863607136797327
VKGRQTPKHI	10	Unmodified	_VKGRQTPKHI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E1465Dfs*5|1|0.06|ENSG00000139618|chr13:32338749-32338750|-/C|frameshift_variant;BRCA2|p.L1466Nfs*8|1|0.06|ENSG00000139618|chr13:32338750-32338751|-/AATCTTCT|frameshift_variant;BRCA2|p.Y839Ifs*42|1|0.11|ENSG00000139618|chr13:32336864-32336865|-/A|frameshift_variant;BRCA2|p.S727Gfs*5|1|0.11|ENSG00000139618|chr13:32336533-32336534|-/GGTTC|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3531494140625	2	582.354014	1162.69348	0.45576	0.00026541	-1.5295	-0.00089072	-1.0738	-0.00062531	582.3530460378859	102.36	1.1668	102.35	101.97	103.14	-0.0054474					95	27	7	0	0	0	0.99657	2	13030	13018;13030		46.457	9.2977	1	8508600			84304	5346	58804	58896	93334;93335	93335					0.11863607136797327
VKGSYVSI	8	Unmodified	_VKGSYVSI_					0	0	0		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000431908.5_1_6:31504422-31508408:-|nuORF;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.302490234375	2	426.744911	851.475269	0.074115	3.1628E-05	0.4657	0.00019874	0.53982	0.00023036	426.7448204919807	67.997	0.62929	67.709	67.388	68.017	-0.28834					32	15	3	0	0	0	0.027866	1	8127	8127		24.203	0	1	450440			84305	10149	58805	58897	93336	93336					0.04358997494466621
VKGTGATVII	10	Unmodified	_VKGTGATVII_					0	0	0		ENST00000484700.1_1_2:127413817-127415240:+|nuORF	ENST00000484700.1_1_2:127413817-127415240:+|nuORF	ENST00000484700.1_1_2:127413817-127415240:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7895202636719	2	479.800217	957.585882	-0.78292	-0.00037565	0.72703	0.00034883	-0.055895	-2.6819E-05	479.8003697691335	34.129	0.5513	33.953	33.742	34.293	-0.17557					29	13	3	0	0	0	0.03519	1	2442	2442		9.7057	0	1	325070			84306	15309	58806	58898	93337	93337					0.1053921748269886
VKGTQSVK	8	Unmodified	_VKGTQSVK_					0	0	0			REV__SPATA31D1|p.E55Kfs*45|1|0.35|ENSG00000214929|chr9:81988979-81988979|C/-|frameshift_variant	REV__SPATA31D1|p.E55Kfs*45|1|0.35|ENSG00000214929|chr9:81988979-81988979|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.55487060546875	2	423.75581	845.497067	2.3064	0.00097736	-1.5892	-0.00067343	0.71722	0.00030393	423.7557896430229	24.201	0.26321	24.02	23.893	24.156	-0.18089					8	5	2	0	0	0	0.027866	1	993	993		19.997	0	1	39328	+		84307	37571	58807	58899	93338	93338					0.06813802243050304
VKGTSLELF	9	Unmodified	_VKGTSLELF_					0	0	0			REV__ENSG00000053108|ENST00000265342|FSTL4	REV__ENSG00000053108|ENST00000265342|FSTL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.28472900390625	2	497.2844	992.554247	-0.0023212	-1.1543E-06	-0.47782	-0.00023761	-0.48014	-0.00023877	497.28392079915557	63.17	0.75379	62.912	62.706	63.46	-0.25824					43	18	3	0	0	0	0.27161	1	7117	7117		79.451	2.6769	1	1004500	+		84308	20177	58808	58900	93339	93339					0.05767224728765541
VKGTSLELF	9	Unmodified	_VKGTSLELF_					0	0	0			REV__ENSG00000053108|ENST00000265342|FSTL4	REV__ENSG00000053108|ENST00000265342|FSTL4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	497.2844	992.554247	-0.14232	-7.0772E-05	-0.4258	-0.00021174	-0.56811	-0.00028251	497.2840663211	63.124	0.94672	62.903	62.609	63.556	-0.22097	-0.025397	8.7451E-05	NaN	79.451	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958660	+		84309	20177	58808	58900							0.05767224728765541
VKGTSLELF	9	Unmodified	_VKGTSLELF_					0	0	0			REV__ENSG00000053108|ENST00000265342|FSTL4	REV__ENSG00000053108|ENST00000265342|FSTL4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	497.2844	992.554247	-0.0023212	-1.1543E-06	-0.47782	-0.00023761	-0.48014	-0.00023877	497.28392079915557	63.17	0.75379	62.912	62.706	63.46	-0.25824	-0.016457	3.5707E-05	NaN	79.451	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1004500	+		84310	20177	58808	58900							0.05767224728765541
VKGTVHQV	8	Unmodified	_VKGTVHQV_					0	0	0		ENST00000512283.1_1_11:66384104-66384788:+|nuORF	ENST00000512283.1_1_11:66384104-66384788:+|nuORF	ENST00000512283.1_1_11:66384104-66384788:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7801208496094	2	434.255977	866.497401	-1.1319	-0.00049156	3.8482	0.0016711	2.7163	0.0011796	434.2568806981392	38.594	0.62157	38.621	38.264	38.886	0.027275					37	16	4	0	0	0	0.027866	1	3210	3210		23.042	0	1	245430			84311	15855	58809	58901	93340	93340					0.05881221962908967
VKGVPQSI	8	Unmodified	_VKGVPQSI_					0	0	0			REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.24053955078125	2	414.252903	826.491253	0.32914	0.00013635	-0.62355	-0.00025831	-0.2944	-0.00012196	414.2525282072358	34.709	0.87907	34.709	34.25	35.129	0					29	22	2	0	0	0	0.027866	1	2539	2539		26.693	0	1	237080	+		84312	25025	58810	58902	93341	93341					0.07106703731381003
VKHEAKVN	8	Unmodified	_VKHEAKVN_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7559814453125	2	462.766709	923.518865	0.22691	0.00010501	-0.15188	-7.0284E-05	0.075037	3.4724E-05	462.76636757538824	39.977	0.65373	39.977	39.661	40.314	0					26	17	2	0	0	0	0.027866	1	3533	3533		21.96	13.138	1	305940			84313	2863	58811	58903	93342	93342					0.054046069916125816
VKHFGQPE	8	Unmodified	_VKHFGQPE_					0	0	0			REV__ENSG00000197081|ENST00000356956|IGF2R	REV__ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	471.24530029296875	2	471.245609	940.476666	-0.53732	-0.00025321	0.28698	0.00013524	-0.25034	-0.00011797	471.2456433428432	47.025	0.93951	46.832	46.545	47.484	-0.19387					62	25	4	0	0	0	0.68164	1	4584	4584		68.787	5.4806	1	3611400	+		84314	28261	58812	58904	93343	93343					0.00404631583239734
VKHGELKVY	9	Unmodified	_VKHGELKVY_					0	0	0		ENST00000515140.1_3_4:68340585-68358532:-|nuORF;ENST00000513216.5_3_4:68338325-68358532:-|nuORF;CENPC|p.S868Lfs*5|1|0.3|ENSG00000145241|chr4:67490035-67490035|A/-|frameshift_variant;ENSG00000145241|ENST00000273853|CENPC	ENST00000515140.1_3_4:68340585-68358532:-|nuORF	ENST00000515140.1_3_4:68340585-68358532:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3423461914062	2	536.811116	1071.60768	-0.68409	-0.00036722	-3.2415	-0.0017401	-3.9255	-0.0021073	536.8093747116574	26.926	0.45129	26.926	26.658	27.109	0					23	10	3	0	0	0	0.024436	1	1445	1445		23.042	0	1	153300			84315	250	58813	58905	93344	93344					0.07474022231281197
VKHGYRLAGKY	11	Unmodified	_VKHGYRLAGKY_					0	0	0		ENST00000315127.8_2_15:74967415-74988272:-|nuORF	ENST00000315127.8_2_15:74967415-74988272:-|nuORF	ENST00000315127.8_2_15:74967415-74988272:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	646.3662109375	2	646.367121	1290.71969	-2.1546	-0.0013927	-0.067712	-4.3767E-05	-2.2223	-0.0014364	646.3670544986726	46.371	0.64639	46.274	45.999	46.645	-0.096649					62	17	5	0	0	0	1.0238	1	4496	4496		31.53	0	1	16880000			84316	12128	58814	58906	93345	93345					0.08595876308277184
VKHILTRF	8	Unmodified	_VKHILTRF_					0	0	0			REV__ENST00000263733.4_1_1:179043785-179043902:+|nuORF	REV__ENST00000263733.4_1_1:179043785-179043902:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7958984375	2	507.316369	1012.61818	-1.5776	-0.00080032	-3.3963	-0.001723	-4.9739	-0.0025233	507.31459856293117	21.405	0.44276	21.192	20.872	21.315	-0.2128					10	8	2	0	0	0	0.027866	1	634	634		31.955	11.473	1	42651	+		84317	29696	58815	58907	93346	93346					0.11238049676364881
VKHYLEPAI	9	Unmodified	_VKHYLEPAI_					0	0	0			REV__ENST00000566560.5_1_16:75668010-75682538:-|nuORF	REV__ENST00000566560.5_1_16:75668010-75682538:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	535.7846069335938	2	535.305667	1068.59678	-0.49955	-0.00026741	-3.5566	-0.0019039	-4.0561	-0.0021713	535.3034962476374	55.742	0.52106	55.586	55.293	55.814	-0.15601					22	13	2	0	0	0	0.024477	1	6151	6151		20.947	1.587	1	407390	+		84318	35301	58816	58908	93347	93347					0.06522619856991696
VKIAVFFF	8	Unmodified	_VKIAVFFF_					0	0	0		ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENST00000489378.5_1_7:141438966-141445458:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3105773925781	2	485.791664	969.568775	0.14564	7.0753E-05	-1.0433	-0.00050685	-0.8977	-0.00043609	485.79114793109113	74.787	0.97129	74.511	74.001	74.973	-0.27573					37	22	2	0	0	0	0.027866	1	8860	8860		37.028	12.826	1	368920			84319	15407	58817	58909	93348	93348					0.08277341667564997
VKICVNVSI	9	Unmodified	_VKICVNVSI_					0	0	0			REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	REV__ENST00000496607.5_1_21:47655184-47686088:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7906799316406	2	487.788795	973.563038	0.29152	0.0001422	3.4181	0.0016673	3.7097	0.0018095	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.77768	1	10343	10343		40.778	1.5253	1	2091900	+		84320	25307	58818	58910	93349	93349					0.0751987509358969
VKIDLKTKSC	10	Unmodified	_VKIDLKTKSC_					0	0	0		ENST00000519072.5_1_8:42251729-42254267:+|nuORF;ENST00000521348.5_1_8:42251729-42259534:+|nuORF;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3	ENST00000519072.5_1_8:42251729-42254267:+|nuORF;ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.828369140625	2	567.831191	1133.64783	0.19762	0.00011222	-3.6546	-0.0020752	-3.457	-0.001963	567.8292504058043	50.369	0.97453	50.09	49.839	50.813	-0.27977					58	25	4	0	0	0	0.83648	1	5119	5119		58.246	20.435	1	2297800			84321	15941;1641	58819	58911	93350	93350					0.08635200839535173
VKIDLKTKSC	10	Unmodified	_VKIDLKTKSC_					0	0	0		ENST00000519072.5_1_8:42251729-42254267:+|nuORF;ENST00000521348.5_1_8:42251729-42259534:+|nuORF;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3	ENST00000519072.5_1_8:42251729-42254267:+|nuORF;ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENST00000521348.5_1_8:42251729-42259534:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.8287353515625	2	567.831191	1133.64783	0.32673	0.00018553	-3.777	-0.0021447	-3.4503	-0.0019592	567.8291508534147	50.231	0.8168	50.05	49.717	50.534	-0.18071					55	21	4	0	0	0	0.70466	1	5095	5095		66.962	10.33	1	2207600			84322	15941;1641	58819	58911	93351	93351					0.08635200839535173
VKIFLILIV	9	Unmodified	_VKIFLILIV_					0	0	0		nc|ENSG00000162236|Q13190-2|STX5;ENSG00000162236|ENST00000294179|STX5	nc|ENSG00000162236|Q13190-2|STX5	nc|ENSG00000162236|Q13190-2|STX5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.3058471679688	2	529.372821	1056.73109	-0.31286	-0.00016562	-1.7049	-0.00090251	-2.0177	-0.0010681	529.87316610935	64.311	0.23357	64.056	63.919	64.152	-0.25563					6	5	2	0	0	0	0.024541	1	7275	7275		17.365	0	1	69722			84323	6924	58820	58912	93352	93352					0.2049930534969917
VKIFVQVL	8	Unmodified	_VKIFVQVL_					0	0	0			REV__ENST00000309096.4_1_5:56542249-56542282:+|nuORF	REV__ENST00000309096.4_1_5:56542249-56542282:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.2662658691406	2	473.310221	944.605889	0.76201	0.00036067	-0.88315	-0.00041801	-0.12114	-5.7338E-05	473.3096911125464	74.359	0.54866	74.1	73.902	74.451	-0.25887					25	12	3	0	0	0	0.027866	1	9058	9058		40.573	0	1	395450	+		84324	30157	58821	58913	93353	93353					0.1313701321331564
VKIGHYVL	8	Unmodified	_VKIGHYVL_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.2803955078125	2	464.78437	927.554188	-0.11345	-5.2731E-05	-4.0099	-0.0018638	-4.1234	-0.0019165	464.7821341207523	24.322	0.51063	24.147	23.786	24.296	-0.17484					20	11	2	0	0	0	0.027866	1	1059	1059		19.36	0	1	194260			84325	6939	58822	58914	93354	93354					0.08751269519416383
VKIILPEG	8	Unmodified	_VKIILPEG_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.77984619140625	2	434.778754	867.542954	-0.71291	-0.00030996	3.9086	0.0016994	3.1957	0.0013894	434.78032008757486	38.379	0.57756	38.379	38.102	38.68	0					51	15	4	0	0	0	0.93274	1	3248	3248		47.916	7.343	1	7961300			84326	7168	58823	58915	93355	93355					0.10388447425282266
VKIILPEG	8	Unmodified	_VKIILPEG_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7806396484375	2	434.778754	867.542954	0.45067	0.00019594	2.8989	0.0012604	3.3496	0.0014563	434.7798992749092	40.428	1.9181	40.428	39.696	41.615	0					185	53	4	0	0	0	1.0239	1	3584	3584		33.516	3.674	1	6987300			84327	7168	58823	58915	93356	93356					0.10388447425282266
VKIILPEG	8	Unmodified	_VKIILPEG_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7802734375	2	434.778754	867.542954	0.54167	0.00023551	2.8257	0.0012286	3.3674	0.0014641	434.77987646317166	40.581	2.017	40.469	39.792	41.809	-0.11223					161	55	3	0	0	0	1.0239	1	3585	3585		33.516	0	1	6285600			84328	7168	58823	58915	93357	93357					0.10388447425282266
VKIILPEG	8	Unmodified	_VKIILPEG_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7803649902344	2	434.778754	867.542954	0.40532	0.00017623	2.8811	0.0012527	3.2864	0.0014289	434.779881348069	42.323	1.8081	42.349	41.709	43.517	0.026012					172	50	4	0	0	0	1.0338	1	3842	3842		31.955	3.7006	1	2864800			84329	7168	58823	58915	93358	93358					0.10388447425282266
VKIILPEG	8	Unmodified	_VKIILPEG_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.78009033203125	2	434.778754	867.542954	-0.33827	-0.00014707	3.568	0.0015513	3.2297	0.0014042	434.78018520007214	36.207	1.8701	36.002	35.467	37.337	-0.20518					135	49	3	0	0	0	0.99042	1	2849	2849		38.806	1.7777	1	8541000			84330	7168	58823	58915	93359	93359					0.10388447425282266
VKIINPQF	8	Unmodified	_VKIINPQF_					0	0	0		CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant;ENSG00000127995|ENST00000297273|CASD1	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.7773742675781	2	479.789653	957.564752	-0.064284	-3.0843E-05	-4.1964	-0.0020134	-4.2607	-0.0020442	479.78730949007917	27.86	0.36467	27.709	27.482	27.847	-0.15195					13	8	2	0	0	0	0.027866	1	1548	1548		25.45	1.2474	1	141880			84331	217	58824	58916	93360	93360					0.0842725217385123
VKIIPDSKI	9	Unmodified	_VKIIPDSKI_					0	0	0		nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10	nc|ENSG00000086827|O43264-2|ZW10	nc|ENSG00000086827|O43264-2|ZW10	MSMS	OPSCC_39_ClassI_Rep-2	2	506.82403564453125	2	506.823692	1011.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.517	1	81.387	80.887	81.887	-0.13075								0	0	0	0.24781	1	10122	10122		71.877	4.3838	1				84332	1826	58825	58917	93361	93361					0.1274807703384795
VKIIPVKT	8	Unmodified	_VKIIPVKT_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.26361083984375	2	449.310221	896.605889	-0.0070969	-3.1887E-06	0.44889	0.00020169	0.4418	0.0001985	449.3103082593989	61.023	0.38837	60.817	60.62	61.008	-0.20599					15	9	2	0	0	0	0.027866	1	6840	6840		10.866	4.5529	1	82004			84333	2034	58826	58918	93362	93362					0.15345013213323
VKIIPVKT	8	Unmodified	_VKIIPVKT_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	449.310221	896.605889	-0.91903	-0.00041293	0.96319	0.00043277	0.044167	1.9845E-05	449.31068575945386	60.881	0.3583	60.705	60.597	60.955	-0.1761	-0.055936	0.0002651	NaN	6.3127	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79471			84334	2034	58826	58918							0.15345013213323
VKILGLNIL	9	Unmodified	_VKILGLNIL_					0	0	0			REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.292236328125	2	491.836603	981.658653	-0.29701	-0.00014608	0.47105	0.00023168	0.17403	8.5596E-05	491.836622773599	79.035	1.3665	79.054	78.777	80.143	0.018669					58	32	2	0	0	0	0.024	1	9763	9763		45.952	0	1	141190	+		84335	25469	58827	58919	93363	93363					0.1670897127612534
VKILTEEIN	9	Unmodified	_VKILTEEIN_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2764892578125	2	529.808239	1057.60193	-0.1757	-9.3085E-05	0.90746	0.00048078	0.73177	0.0003877	529.8083408179606	49.306	0.5397	49.306	49.005	49.544	0					46	14	4	0	0	0	0.024427	1	5055	5055		34.173	12.213	1	1520900			84336	5372	58828	58920	93364	93364					0.07542878928961727
VKIMADKEI	9	Unmodified	_VKIMADKEI_					0	0	0			REV__ENSG00000126016|ENST00000371959|AMOT;REV__nc|ENSG00000166025|Q8IY63-2|AMOTL1	REV__ENSG00000126016|ENST00000371959|AMOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.8384399414062	2	523.79936	1045.58417	-1.0478	-0.00054886	1.5472	0.00081041	0.49934	0.00026155	523.8001059628473	60.763	0.30804	60.838	60.643	60.951	0.074306					9	7	2	0	0	0	0.023239	1	6911	6911		74.255	7.8258	1	98050	+		84337	22877;25960	58829	58921	93365	93365					0.06319840402443333
VKIMYANDV	9	Unmodified	_VKIMYANDV_					0	0	0			REV__ENSG00000172867|ENST00000309680|KRT2	REV__ENSG00000172867|ENST00000309680|KRT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.8192138671875	2	526.775885	1051.53722	0.19792	0.00010426	-0.57454	-0.00030265	-0.37662	-0.0001984	526.7752695285769	71.093	0.6657	71.104	70.769	71.434	0.010735					28	16	2	0	0	0	0.024477	1	8520	8520		9.7057	0	1	344170	+	+	84338	19561	58830	58922	93366	93366					0.013509808512708332
VKIMYANDV	9	Unmodified	_VKIMYANDV_					0	0	0			REV__ENSG00000172867|ENST00000309680|KRT2	REV__ENSG00000172867|ENST00000309680|KRT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.775885	1051.53722	-0.029103	-1.5331E-05	-0.72194	-0.0003803	-0.75105	-0.00039563	526.7753862795224	71.304	0.61078	71.029	70.744	71.354	-0.27478	0.01492	7.7109E-05	NaN	9.7057	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137330	+	+	84339	19561	58830	58922							0.013509808512708332
VKIMYANDV	9	Unmodified	_VKIMYANDV_					0	0	0			REV__ENSG00000172867|ENST00000309680|KRT2	REV__ENSG00000172867|ENST00000309680|KRT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.775885	1051.53722	-0.14629	-7.706E-05	-0.25716	-0.00013547	-0.40345	-0.00021253	526.7756872487834	71.227	0.71315	70.97	70.695	71.408	-0.25713	-0.044854	0.00056678	NaN	9.7057	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161070	+	+	84340	19561	58830	58922							0.013509808512708332
VKIMYANDV	9	Unmodified	_VKIMYANDV_					0	0	0			REV__ENSG00000172867|ENST00000309680|KRT2	REV__ENSG00000172867|ENST00000309680|KRT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.775885	1051.53722	0.70425	0.00037098	-2.2202	-0.0011696	-1.516	-0.00079858	526.7750058727037	71.161	0.65009	70.955	70.615	71.265	-0.20613	-0.059691	-0.0015014	NaN	9.7057	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193410	+	+	84341	19561	58830	58922							0.013509808512708332
VKINSGHVE	9	Unmodified	_VKINSGHVE_					0	0	0			REV__ENST00000585720.1_1_17:58285392-58286144:-|nuORF	REV__ENST00000585720.1_1_17:58285392-58286144:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.7957458496094	2	491.769448	981.524344	-0.081547	-4.0102E-05	2.1619	0.0010631	2.0803	0.001023	491.77056688734433	47.732	0.50676	47.456	47.231	47.738	-0.27598					18	13	2	0	0	0	0.024367	1	4697	4697		16.717	0	1	140910	+		84342	35583	58831	58923	93367	93367					0.03284285783422547
VKIPSRPW	8	Unmodified	_VKIPSRPW_					0	0	0			REV__chrX:152759684-152759843|401|37.81|0.3|6.97|+|0|CSAG3,CSAG3|1	REV__chrX:152759684-152759843|401|37.81|0.3|6.97|+|0|CSAG3,CSAG3|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.79559326171875	2	491.795269	981.575986	-0.63498	-0.00031228	1.8996	0.00093421	1.2646	0.00062193	491.79600483017987	47.5	1.5976	47.404	46.295	47.893	-0.096649					123	43	5	0	0	0	1.043	1	4662	4662		30.504	1.3541	1	5430200	+		84343	19479	58832	58924	93368	93368					0.08446074267988024
VKIPTSKY	8	Unmodified	_VKIPTSKY_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000551414.1_1_14:31762513-31765297:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	468.30517578125	2	468.28166	934.548768	-0.24355	-0.00011405	0.29734	0.00013924	0.053788	2.5188E-05	468.2813951493726	53.2	0.37775	53.011	52.831	53.208	-0.18982					11	9	2	0	0	0	0.027866	1	5561	5561		50.025	25.521	1	76238			84344	4352	58833	58925	93369	93369					0.07887545936932838
VKIQSRLSH	9	Unmodified	_VKIQSRLSH_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|84|2|anti-sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|84|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.260986328125	2	534.31964	1066.62473	-0.42958	-0.00022953	1.089	0.00058186	0.65939	0.00035233	534.3217842852024	24.598	0.25332	24.383	24.296	24.55	-0.2151					10	5	3	0	0	0	0.024209	1	1090	1090		47.657	0	1	33050	+		84345	36199	58834	58926	93370	93370					0.09407942837083283
VKIRLSFLL	9	Unmodified	_VKIRLSFLL_					0	0	0			REV__ENST00000380358.8_2_17:7814903-7815650:+|nuORF	REV__ENST00000380358.8_2_17:7814903-7815650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.299072265625	2	544.863152	1087.71175	-0.57487	-0.00031322	0.63722	0.0003472	0.062358	3.3976E-05	544.8633926737398	63.712	0.11	63.461	63.408	63.518	-0.25141					4	2	2	0	0	0	0.024374	1	7428	7428		49.442	0	1	78023	+		84346	31476	58835	58927	93371	93371					0.17140349058786342
VKISATVNT	9	Unmodified	_VKISATVNT_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8934326171875	2	466.7742	931.533846	-0.59428	-0.0002774	0.38554	0.00017996	-0.20875	-9.7437E-05	466.77431056508374	30.48	1.0061	30.302	29.866	30.872	-0.17818					46	23	3	0	0	0	0.024374	1	1883	1883		25.574	0	1	746370			84347	1804	58836	58928	93372	93372					0.06534054068947626
VKISVEDID	9	Unmodified	_VKISVEDID_					0	0	0		CDH9|p.R587Cfs*6|1|0.34|ENSG00000113100|chr5:26885736-26885737|CG/-|frameshift_variant;ENSG00000113100|ENST00000231021|CDH9	CDH9|p.R587Cfs*6|1|0.34|ENSG00000113100|chr5:26885736-26885737|CG/-|frameshift_variant	CDH9|p.R587Cfs*6|1|0.34|ENSG00000113100|chr5:26885736-26885737|CG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.27520751953125	2	509.276772	1016.53899	0.52365	0.00026668	-0.27519	-0.00014015	0.24846	0.00012654	509.276541544826	70.929	1.2565	70.929	70.613	71.869	0					67	31	4	0	0	0	0.4752	1	8602	8602		60.972	2.19	1	6719600			84348	241	58837	58929	93373	93373					0.031383131409029374
VKITRDLSAS	10	Unmodified	_VKITRDLSAS_					0	0	0			REV__ENSG00000184432|ENST00000333188|COPB2	REV__ENSG00000184432|ENST00000333188|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3167724609375	2	545.316763	1088.61897	-0.47781	-0.00026056	0.35183	0.00019186	-0.12598	-6.87E-05	545.3168390277557	89.217	3.4705	89.089	88.198	91.668	-0.12774					302	82	5	0	0	0	1.0616	2	10923	10887;10923		37.812	4.7437	1	17400000	+		84349	27668	58838	58930	93374;93375	93375					0.07820799534738399
VKIVINEI	8	Unmodified	_VKIVINEI_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2967834472656	2	464.29731	926.580068	-0.2132	-9.8987E-05	0.21311	9.8948E-05	-8.4638E-05	-3.9297E-08	464.297257107157	65.51	1.1431	65.269	65.004	66.148	-0.24144					55	27	4	0	0	0	0.83003	1	7491	7491		56.721	5.3856	1	1662700			84350	18160	58839	58931	93376	93376					0.1138411897103424
VKIVINEI	8	Unmodified	_VKIVINEI_					0	0	0		nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.29693603515625	2	464.29731	926.580068	-1.2542	-0.00058234	1.2129	0.00056315	-0.04134	-1.9194E-05	464.29767860842486	65.527	0.74085	65.314	65.012	65.753	-0.21328					38	17	3	0	0	0	0.5947	1	7494	7494		76.774	4.8967	1	1606800			84351	18160	58839	58931	93377	93377					0.1138411897103424
VKIVKIHPL	9	Unmodified	_VKIVKIHPL_					0	0	0		nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENSG00000009954|ENST00000339594|BAZ1B;BAZ1B|p.D931Nfs*41|1|0.06|ENSG00000009954|chr7:73469593-73469594|-/CGTTTTCCATTTGCAGAATTTCTTTATTG|frameshift_variant	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.8365478515625	2	523.85787	1045.70119	-0.53291	-0.00027917	-2.94	-0.0015402	-3.473	-0.0018193	523.8571055906078	61.172	0.34074	60.959	60.719	61.06	-0.2134					11	8	2	0	0	0	0.023355	1	7002	7002		76.847	0	1	49494			84352	866	58840	58932	93378	93378					0.18016366404367545
VKIVVRQAP	9	Unmodified	_VKIVVRQAP_					0	0	0		SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP;SRCAP|p.H2830Qfs*3|1|0.18|ENSG00000080603|chr16:30738528-30738529|-/A|frameshift_variant	SRCAP|p.H2418Lfs*57|1|0.23|ENSG00000080603|chr16:30737293-30737293|A/-|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.26605224609375	2	505.329476	1008.6444	-0.89846	-0.00045402	0.086459	4.369E-05	-0.812	-0.00041033	505.32943762419046	62.858	0.44221	62.858	62.612	63.054	0					13	10	2	0	0	0	0.024457	1	7303	7303		21.96	5.4867	1	278450			84353	1690;37967	58841	58933	93379	93379					0.14042318847839397
VKKAEKLDI	9	Unmodified	_VKKAEKLDI_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1;REV__ENST00000490842.5_1_7:97862595-97863063:-|nuORF	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7470092773438	2	522.326599	1042.63865	0.83646	0.00043691	-1.1662	-0.00060911	-0.32969	-0.0001722	522.3256566644036	37.012	0.59217	36.803	36.445	37.037	-0.2092					22	14	2	0	0	0	0.024477	1	2890	2890		35.618	1.4457	1	110910	+		84354	28676;33712	58842	58934	93380	93380					0.11903175545512568
VKKALVSKP	9	Unmodified	_VKKALVSKP_					0	0	0			REV__VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	REV__VANGL2|p.Q449Pfs*70|1|0.06|ENSG00000162738|chr1:160425154-160425155|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2920227050781	2	485.326402	968.638252	-0.5975	-0.00028998	0.93254	0.00045259	0.33504	0.0001626	485.32671986812096	80.684	2.1168	80.684	80.289	82.406	0					108	51	3	0	0	0	0.024374	1	10270	10270		49.442	15.269	1	1576700	+		84355	25484	58843	58935	93381	93381					0.15267800616322802
VKKARNILP	9	Unmodified	_VKKARNILP_					0	0	0			REV__ENSG00000049239|ENST00000377403|H6PD	REV__ENSG00000049239|ENST00000377403|H6PD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7664794921875	2	519.842751	1037.67095	-0.66505	-0.00034572	0.46159	0.00023995	-0.20347	-0.00010577	519.8429345111454	47.378	1.0319	47.378	47.04	48.072	0					78	30	4	0	0	0	0.024294	1	4796	4796		37.159	0	1	7895300	+		84356	20144	58844	58936	93382	93382					0.15362007739167893
VKKCCKSVGE	10	Unmodified	_VKKCCKSVGE_					0	0	0		ENSG00000182111|ENST00000420713|ZNF716	ENSG00000182111|ENST00000420713|ZNF716	ENSG00000182111|ENST00000420713|ZNF716	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.7803344726562	2	540.780644	1079.54674	-0.97183	-0.00052555	0.78441	0.00042419	-0.18742	-0.00010135	540.7808863692434	28.21	1.0813	28.041	27.688	28.769	-0.16897					54	25	3	0	0	0	0.55353	1	1614	1614		82.241	7.9855	1	1383100			84357	9100	58845	58937	93383	93383					0.010144258651962446
VKKDLQVIL	9	Unmodified	_VKKDLQVIL_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7715454101562	2	528.344792	1054.67503	-1.232	-0.00065091	0.46142	0.00024379	-0.77056	-0.00040712	528.3452755196444	55.901	0.35899	55.685	55.528	55.887	-0.21551					24	9	3	0	0	0	0.024354	1	6000	6000		38.806	8.3025	1	181430	+		84358	25147	58846	58938	93384	93384					0.14988052442231492
VKKDLQVIL	9	Unmodified	_VKKDLQVIL_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.344792	1054.67503	-0.41589	-0.00021974	-0.54385	-0.00028734	-0.95974	-0.00050708	528.3441330079427	55.921	0.70129	55.765	55.293	55.995	-0.15601	0.04086	-0.00076586	NaN	35.618	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215840	+		84359	25147	58846	58938							0.14988052442231492
VKKEGQVL	8	Unmodified	_VKKEGQVL_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.7791442871094	2	450.779285	899.544017	-0.62299	-0.00028083	0.39551	0.00017829	-0.22749	-0.00010255	450.779287593624	30.569	0.78777	30.391	30.124	30.912	-0.17817					43	18	4	0	0	0	0.39824	1	1972	1972		97.473	0	1	1396700	+		84360	36664	58847	58939	93385	93385					0.09022661794188025
VKKEGQVL	8	Unmodified	_VKKEGQVL_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-3|DCTN4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7792663574219	2	450.779285	899.544017	-0.13074	-5.8934E-05	-0.0095328	-4.2972E-06	-0.14027	-6.3232E-05	450.77907792362157	30.642	0.82892	30.492	30.219	31.048	-0.14952					46	19	4	0	0	0	0.35998	1	1962	1962		102.77	0	1	1281300	+		84361	36664	58847	58939	93386	93386					0.09022661794188025
VKKEHKPE	8	Unmodified	_VKKEHKPE_					0	0	0			REV__ENST00000508165.1_1_4:135248307-135248892:+|nuORF	REV__ENST00000508165.1_1_4:135248307-135248892:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.78704833984375	2	497.787641	993.56073	-1.2608	-0.0006276	1.1267	0.00056084	-0.13411	-6.6761E-05	497.7880770920266	60.587	1.0045	60.666	60.318	61.322	0.078888					57	26	4	0	0	0	0.68164	1	6893	6893		68.787	0	1	4286200	+		84362	34060	58848	58940	93387	93387					0.06369162680130103
VKKEITLL	8	Unmodified	_VKKEITLL_					0	0	0		ENST00000470800.1_1_21:30518012-30547210:+|nuORF;ENSG00000156265|ENST00000399928|MAP3K7CL;nc|ENSG00000156265|P57077-1|MAP3K7CL	ENST00000470800.1_1_21:30518012-30547210:+|nuORF	ENST00000470800.1_1_21:30518012-30547210:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2953796386719	2	472.312961	942.611368	-0.065047	-3.0723E-05	4.0563	0.0019159	3.9913	0.0018851	472.3148063636504	34.28	0.23734	34.073	34.005	34.242	-0.20696					9	5	2	0	0	0	0.027866	1	2502	2502		55.504	14.932	1	61648			84363	6519	58849	58941	93388	93388					0.13776692005137647
VKKEKRRK	8	Unmodified	_VKKEKRRK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3422241210938	2	536.359099	1070.70365	-0.86328	-0.00046303	-0.43232	-0.00023188	-1.2956	-0.00069491	536.3587865672467	27.321	0.24816	27.164	27.018	27.266	-0.15664					7	5	2	0	0	0	0.027866	1	1479	1479		34.173	3.6689	1	91006	+		84364	22150	58850	58942	93389	93389					0.1711221486202703
VKKEYRDD	8	Unmodified	_VKKEYRDD_					0	0	0		nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2;nc|ENSG00000006576|Q8N3S3-4|PHTF2;ENST00000454592.5_1_7:77538159-77567164:+|nuORF;nc|ENSG00000006576|Q8N3S3-7|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.355224609375	2	526.772188	1051.52982	-1.249	-0.00065793	0.17078	8.9963E-05	-1.0782	-0.00056797	526.772147222963	50.131	0.86504	50.131	49.842	50.707	0					54	25	3	0	0	0	0.027866	1	5265	5265		37.159	22.294	1	709270			84365	796	58851	58943	93390	93390					0.006119645752505676
VKKEYRDD	8	Unmodified	_VKKEYRDD_					0	0	0		nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2;nc|ENSG00000006576|Q8N3S3-4|PHTF2;ENST00000454592.5_1_7:77538159-77567164:+|nuORF;nc|ENSG00000006576|Q8N3S3-7|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2	nc|ENSG00000006576|Q8N3S3-3|PHTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3558349609375	2	526.772188	1051.52982	0.20097	0.00010586	-0.83282	-0.00043871	-0.63186	-0.00033284	526.7716338219044	49.998	0.65878	50.079	49.884	50.543	0.080994					33	19	2	0	0	0	0.027866	1	5184	5184		37.159	0	1	715120			84366	796	58851	58943	93391	93391					0.006119645752505676
VKKFFKPI	8	Unmodified	_VKKFFKPI_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-2|OSBPL6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.2538757324219	2	503.826038	1005.63752	-1.0643	-0.0005362	-3.9782	-0.0020043	-5.0424	-0.0025405	503.82379947982855	44.881	0.55599	44.732	44.488	45.044	-0.1488					31	15	3	0	0	0	0.027866	1	4281	4281		12.207	0	1	177400	+		84367	20628	58852	58944	93392	93392					0.13493005967268346
VKKGHAHVQ	9	Unmodified	_VKKGHAHVQ_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant;nc|ENSG00000157423|Q4G0P3-5|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.3230285644531	2	502.293425	1002.5723	-0.12957	-6.5084E-05	3.1051	0.0015597	2.9755	0.0014946	502.2948360651326	74.005	0.45183	73.74	73.406	73.858	-0.26479					19	12	2	0	0	0	0.024405	1	8685	8685		27.882	0	1	859460			84368	6595	58853	58945	93393	93393					0.07111404494128237
VKKGKAITP	9	Unmodified	_VKKGKAITP_					0	0	0		nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2	nc|ENSG00000152455|Q9H5I1-2|SUV39H2	nc|ENSG00000152455|Q9H5I1-2|SUV39H2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.3106689453125	2	471.310752	940.606951	0.16549	7.7998E-05	-0.71405	-0.00033654	-0.54855	-0.00025854	471.31033490871096	48.289	1.2648	48.356	48.043	49.308	0.066795					95	34	5	0	0	0	0.32811	1	4841	4841		71.877	5.4482	1	7919300			84369	6273	58854	58946	93394	93394					0.13427227582224077
VKKGKKLIV	9	Unmodified	_VKKGKKLIV_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7918701171875	2	506.865695	1011.71684	-1.261	-0.00063913	3.1875	0.0016157	1.9266	0.00097652	506.86858116774744	44.325	0.22709	44.18	44.065	44.292	-0.14471					10	6	2	0	0	0	0.024466	1	4207	4207		18.324	0	1	204950	+		84370	26603	58855	58947	93395	93395					0.21144652921418583
VKKGPDDLI	9	Unmodified	_VKKGPDDLI_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.7661437988281	2	492.78985	983.565146	-0.37271	-0.00018367	-0.0041396	-2.04E-06	-0.37685	-0.00018571	492.7894064389454	77.738	0.37393	77.754	77.406	77.78	0.015907					14	8	3	0	0	0	0.024344	1	9497	9497		64.207	20.09	1	310450	+		84371	20205	58856	58948	93396	93396					0.07270627103048355
VKKHIKELLDM	11	Unmodified	_VKKHIKELLDM_					0	0	0		ENST00000557763.5_1_15:91524929-91537713:-|nuORF;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;ENST00000555791.5_1_15:91527220-91537794:-|nuORF	ENST00000557763.5_1_15:91524929-91537713:-|nuORF	ENST00000557763.5_1_15:91524929-91537713:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.2667236328125	3	451.935607	1352.78499	-0.11057	-4.9968E-05	3.366	0.0015212	3.2554	0.0014712	451.9368260225389	21.456	0.52717	21.527	21.205	21.732	0.071487					21	10	3	0	0	0	0.02484	1	588	588		12.433	0	1	48823			84372	10242	58857	58949	93397	93397					0.12271109719085871
VKKIGSLR	8	Unmodified	_VKKIGSLR_					0	0	0		ENSG00000183463|ENST00000332715|URAD	ENSG00000183463|ENST00000332715|URAD	ENSG00000183463|ENST00000332715|URAD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.76068115234375	2	450.803094	899.591636	-0.87531	-0.00039459	1.7342	0.00078178	0.85889	0.00038719	450.8041556049864	39.022	0.24966	39.045	38.956	39.206	0.023727					10	6	2	0	0	0	0.027866	1	3274	3274		23.042	0	1	341690			84373	9232	58858	58950	93398	93398					0.1378236078504642
VKKIGSLR	8	Unmodified	_VKKIGSLR_					0	0	0		ENSG00000183463|ENST00000332715|URAD	ENSG00000183463|ENST00000332715|URAD	ENSG00000183463|ENST00000332715|URAD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.803094	899.591636	-0.34558	-0.00015579	5.8946	0.0026573	5.549	0.0025015	450.805751159014	38.923	0.211	38.824	38.772	38.983	-0.098755	-0.11078	0.0021065	NaN	38.806	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234600			84374	9232	58858	58950							0.1378236078504642
VKKILKKGL	9	Unmodified	_VKKILKKGL_					0	0	0		ENSG00000230062|ENST00000565422|ANKRD66	ENSG00000230062|ENST00000565422|ANKRD66	ENSG00000230062|ENST00000565422|ANKRD66	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.837158203125	2	513.87352	1025.73249	-0.020023	-1.0289E-05	3.0851	0.0015854	3.0651	0.0015751	513.8749330990097	68.39	0.26144	68.409	68.237	68.499	0.018913					8	6	2	0	0	0	0.024541	1	8117	8117		7.6903	0	1	81707			84375	10686	58859	58951	93399	93399					0.22064939438450892
VKKIVLLA	8	Unmodified	_VKKIVLLA_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.25933837890625	2	442.320589	882.626624	-0.19549	-8.6469E-05	-3.0712	-0.0013585	-3.2667	-0.0014449	442.31976603309687	27.323	0.22237	27.31	27.205	27.427	-0.012983					7	5	2	0	0	0	0.027866	1	1466	1466		20.482	6.7065	1	86501			84376	990	58860	58952	93400	93400					0.1806160359299156
VKKIVSLV	8	Unmodified	_VKKIVSLV_					0	0	0		nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	nc|ENSG00000178104|Q5VU43|PDE4DIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.29217529296875	2	443.310221	884.605889	-0.027289	-1.2098E-05	3.8962	0.0017272	3.8689	0.0017151	443.3113151668255	37.023	0.42947	37.055	36.797	37.226	0.032269					12	10	2	0	0	0	0.027866	1	2902	2902		38.806	0	1	62696			84377	8792	58861	58953	93401	93401					0.15897013213327682
VKKKEKIL	8	Unmodified	_VKKKEKIL_					0	0	0		ENST00000506175.1_1_4:69188337-69188418:-|nuORF	ENST00000506175.1_1_4:69188337-69188418:-|nuORF	ENST00000506175.1_1_4:69188337-69188418:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3056335449219	2	493.342052	984.669552	0.43511	0.00021466	1.9102	0.00094238	2.3453	0.001157	493.3430576094667	69.389	0.15569	69.096	69.01	69.166	-0.29292					6	3	2	0	0	0	0.027866	1	8309	8309		18.324	0.95945	1	45005			84378	15738	58862	58954	93402	93402					0.1766037365041484
VKKKGGKK	8	Unmodified	_VKKKGGKK_					0	0	0		nc|ENSG00000160401|Q5JU67-2|CFAP157;ENSG00000160401|ENST00000373295|CFAP157	nc|ENSG00000160401|Q5JU67-2|CFAP157	nc|ENSG00000160401|Q5JU67-2|CFAP157	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7747802734375	2	436.805637	871.596721	0.67774	0.00029604	-0.94331	-0.00041204	-0.26557	-0.000116	436.80368023803817	90.242	0.48862	90.104	89.749	90.237	-0.13824					17	11	2	0	0	0	0.027866	1	11022	11022		1.3276	0	1	45226			84379	6812	58863	58955	93403	93403					0.15578664647659934
VKKKIKEV	8	Unmodified	_VKKKIKEV_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;nc|ENSG00000171109|Q8IWA4-3|MFN1;ENST00000482661.1_1_3:179094869-179095079:+|nuORF	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2921447753906	2	486.334227	970.653902	-0.42267	-0.00020556	2.9251	0.0014226	2.5024	0.001217	486.33304024397756	81.839	0.29897	81.697	81.483	81.782	-0.14249					9	6	2	0	0	0	0.027866	1	9811	9811		19.36	0	1	50987			84380	8112	58864	58956	93404	93404					0.16740087133371162
VKKKKEVE	8	Unmodified	_VKKKKEVE_					0	0	0			REV__ENST00000445338.1_1_10:13633913-13634195:-|nuORF	REV__ENST00000445338.1_1_10:13633913-13634195:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2704162597656	2	494.313492	986.612431	-0.17676	-8.7376E-05	3.4913	0.0017258	3.3146	0.0016384	494.3161515397243	77.51	0.42145	77.524	77.275	77.696	0.013496					20	9	3	0	0	0	0.027866	1	9504	9504		17.365	0.89182	1	88475	+		84381	32609	58865	58957	93405	93405					0.11858906374038725
VKKKKGLL	8	Unmodified	_VKKKKGLL_					0	0	0			REV__ENST00000403491.7_1_1:61922313-61922541:+|nuORF	REV__ENST00000403491.7_1_1:61922313-61922541:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.289306640625	2	457.331488	912.648422	0.44767	0.00020473	3.0305	0.001386	3.4782	0.0015907	457.33256933923366	93.851	0.48666	93.851	93.602	94.088	0					19	11	3	0	0	0	0.027866	1	11948	11948		28.254	6.5519	1	77077	+		84382	31890	58866	58958	93406	93406					0.18860408341561197
VKKKKGLL	8	Unmodified	_VKKKKGLL_					0	0	0			REV__ENST00000403491.7_1_1:61922313-61922541:+|nuORF	REV__ENST00000403491.7_1_1:61922313-61922541:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.2892150878906	2	457.331488	912.648422	0.18247	8.3449E-05	2.5633	0.0011723	2.7458	0.0012557	457.33287699518036	93.726	0.17059	93.603	93.54	93.711	-0.12215					5	3	2	0	0	0	0.027866	1	11553	11553		20.482	6.7065	1	28656	+		84383	31890	58866	58958	93407	93407					0.18860408341561197
VKKKKSPTFM	10	Unmodified	_VKKKKSPTFM_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.3535766601562	2	597.357376	1192.7002	-0.68039	-0.00040643	-4.1504	-0.0024793	-4.8308	-0.0028857	597.3540221839667	103.66	1.264	103.66	103.14	104.4	0.0031357					78	31	5	0	0	0	1.0122	1	13285	13285		44.377	12.847	1	534480	+		84384	22985	58867	58959	93408	93408					0.11155783973140387
VKKKLRTL	8	Unmodified	_VKKKLRTL_					0	0	0		nc|ENSG00000134899|P28715-2|ERCC5;ENSG00000134899|ENST00000652225|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	nc|ENSG00000134899|P28715-2|ERCC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3056640625	2	493.347669	984.680785	-1.0431	-0.00051463	-3.9682	-0.0019577	-5.0114	-0.0024724	493.34557161863455	69.47	0.12595	69.203	69.121	69.247	-0.26725					4	2	2	0	0	0	0.027866	1	8045	8045		10.866	0	1	23591			84385	4841	58868	58960	93409	93409					0.18783195744561
VKKKMATN	8	Unmodified	_VKKKMATN_					0	0	0			REV__ENSG00000155876|ENST00000380527|RRAGA	REV__ENSG00000155876|ENST00000380527|RRAGA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.2791442871094	2	460.273312	918.532072	-0.12981	-5.975E-05	-3.7008	-0.0017034	-3.8306	-0.0017631	460.27141862825374	67.607	0.51134	67.369	67.118	67.629	-0.23814					24	11	3	0	0	0	0.027866	1	7772	7772		34.173	0	1	511610	+		84386	20721	58869	58961	93410	93410					0.0695472177933425
VKKKTRKA	8	Unmodified	_VKKKTRKA_					0	0	0		ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENST00000420969.1_1_2:162357792-162360000:-|nuORF	ENST00000420969.1_1_2:162357792-162360000:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.800048828125	2	479.829643	957.644734	0.17442	8.3693E-05	3.409	0.0016357	3.5834	0.0017194	479.8314902084468	27.127	0.10999	27.127	27.034	27.144	0					4	2	2	0	0	0	0.027866	1	1453	1453		53.351	7.3995	1	54603			84387	13986	58870	58962	93411	93411					0.16421738567680677
VKKKTVHLIG	10	Unmodified	_VKKKTVHLIG_					0	0	0			REV__nc|ENSG00000109320|P19838|NFKB1	REV__nc|ENSG00000109320|P19838|NFKB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2706298828125	2	561.871508	1121.72846	-0.2418	-0.00013586	1.4386	0.0008083	1.1968	0.00067244	561.8719642841002	26.114	0.45232	25.946	25.809	26.262	-0.16816					13	13	2	0	0	0	0.03519	1	1329	1329		19.997	0	1	251040	+		84388	21790	58871	58963	93412	93412					0.17246849944717724
VKKLFPVLK	9	Unmodified	_VKKLFPVLK_					0	0	0			REV__ENSG00000189369|ENST00000340438|GSPT2	REV__ENSG00000189369|ENST00000340438|GSPT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3422241210938	2	536.36807	1070.72159	-0.84601	-0.00045377	1.3804	0.00074039	0.53436	0.00028661	536.3689219253591	27.332	0.20485	27.176	27.061	27.266	-0.15664					8	4	2	0	0	0	0.024457	1	1479	1479		37.159	6.6555	1	32386	+		84389	28117	58872	58964	93413	93413					0.189055370641654
VKKLKNLKT	9	Unmodified	_VKKLKNLKT_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3426513671875	2	536.366059	1070.71756	-1.6107	-0.00086391	-1.359	-0.00072892	-2.9697	-0.0015928	536.3653362107228	26.934	0.32499	27.015	26.883	27.208	0.081293					12	8	2	0	0	0	0.024484	1	1404	1404		30.318	0	1	246050			84390	8502	58873	58965	93414	93414					0.18503447570446951
VKKLLAAGVV	10	Unmodified	_VKKLLAAGVV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.8045349121094	2	499.342052	996.669552	-0.29759	-0.0001486	1.0379	0.00051824	0.74026	0.00036964	499.3422825083737	52.672	0.2403	52.545	52.391	52.632	-0.12705					9	5	2	0	0	0	0.03519	1	5488	5488		23.042	11.531	1	114270			84391	5425	58874	58966	93415	93415					0.17108373650410158
VKKLLAAGVV	10	Unmodified	_VKKLLAAGVV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.8034362792969	2	499.342052	996.669552	0.49566	0.00024751	-1.3714	-0.00068482	-0.87579	-0.00043732	499.3411908606056	52.854	0.27989	52.596	52.443	52.723	-0.25838					10	6	2	0	0	0	0.03519	1	5511	5511		29.15	10.825	1	87990			84392	5425	58874	58966	93416	93416					0.17108373650410158
VKKLLAAGVV	10	Unmodified	_VKKLLAAGVV_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.8038024902344	2	499.342052	996.669552	-0.33225	-0.00016591	-0.28142	-0.00014053	-0.61368	-0.00030643	499.34174229952805	52.858	0.36341	52.669	52.43	52.793	-0.18982					11	8	2	0	0	0	0.03519	1	5488	5488		35.618	10.168	1	158880			84393	5425	58874	58966	93417	93417					0.17108373650410158
VKKLLCKLG	9	Unmodified	_VKKLLCKLG_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2923278808594	2	501.33063	1000.64671	-0.51642	-0.0002589	0.31655	0.0001587	-0.19987	-0.0001002	501.8329710975124	57.287	0.17864	57.12	57.001	57.18	-0.1672					6	4	2	0	0	0	0.024541	1	6229	6229		23.042	14.811	1	144640	+		84394	22001	58875	58967	93418	93418					0.14641031261294302
VKKLLDLL	8	Unmodified	_VKKLLDLL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2927551269531	2	471.323328	940.632104	-0.1589	-7.4894E-05	-1.0114	-0.0004767	-1.1703	-0.0005516	471.3232435105439	50.161	0.28896	50.161	50.052	50.341	0					11	8	2	0	0	0	0.027866	1	5216	5216		42.396	0	1	135040			84395	7771	58876	58968	93419	93419					0.15941282384790156
VKKMIGPK	8	Unmodified	_VKKMIGPK_					0	0	0			REV__ENST00000325042.2_1_7:22766279-22767222:-|nuORF	REV__ENST00000325042.2_1_7:22766279-22767222:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.76116943359375	2	450.788598	899.562644	-0.57948	-0.00026122	1.3925	0.00062772	0.81302	0.0003665	450.7904150883573	39.165	0.39693	38.942	38.789	39.186	-0.22311					14	10	2	0	0	0	0.027866	1	3321	3321		17.365	0	1	406070	+		84396	30383	58877	58969	93420	93420					0.10884500164388555
VKKMKIGIL	9	Unmodified	_VKKMKIGIL_					0	0	0		ENST00000291232.4_2_22:42318247-42318586:-|nuORF	ENST00000291232.4_2_22:42318247-42318586:-|nuORF	ENST00000291232.4_2_22:42318247-42318586:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.313232421875	2	515.34628	1028.67801	0.26492	0.00013653	0.5403	0.00027844	0.80522	0.00041497	515.3469204250353	88.066	0.26896	87.935	87.803	88.072	-0.13135					9	6	2	0	0	0	0.024541	1	10744	10744		24.203	4.8428	1	70468			84397	11792	58878	58970	93421	93421					0.16481604295381658
VKKMKVGN	8	Unmodified	_VKKMKVGN_					0	0	0			REV__ENSG00000128596|ENST00000297788|CCDC136	REV__ENSG00000128596|ENST00000297788|CCDC136	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.2427062988281	2	452.275855	902.537157	-0.041767	-1.889E-05	2.2058	0.00099762	2.164	0.00097873	452.27683703491886	53.871	0.28648	53.724	53.602	53.889	-0.14723					10	7	2	0	0	0	0.027866	1	5851	5851		19.36	0	1	192370	+		84398	22999	58879	58971	93422	93422					0.08199025641965818
VKKPACPDD	9	Unmodified	_VKKPACPDD_					0	0	0			REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2923278808594	2	486.744585	971.474617	-0.1931	-9.3992E-05	1.5496	0.00075425	1.3565	0.00066026	486.74489121753896	81.341	1.1368	81.199	80.817	81.954	-0.14248					61	26	4	0	0	0	0.024477	1	9871	9871		44.117	15.863	1	519550	+		84399	22388	58880	58972	93423	93423					-0.012261652168945147
VKKPERTP	8	Unmodified	_VKKPERTP_					0	0	0			REV__ENST00000570299.5_1_17:44039703-44096001:+|nuORF	REV__ENST00000570299.5_1_17:44039703-44096001:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.8037414550781	2	477.790184	953.565815	0.17158	8.1978E-05	-0.47492	-0.00022691	-0.30334	-0.00014493	477.7899721172703	52.492	0.97242	52.584	52.04	53.013	0.091942					47	24	3	0	0	0	0.027866	1	5538	5538		27.882	3.6795	1	421580	+		84400	27890	58881	58973	93424	93424					0.08717466542748298
VKKPHHYR	8	Unmodified	_VKKPHHYR_					0	0	0		ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENST00000497682.1_1_3:109128527-109128830:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.781494140625	2	532.809242	1063.60393	0.13444	7.1633E-05	-0.42887	-0.0002285	-0.29442	-0.00015687	532.8089394921419	59.36	0.53118	59.172	58.938	59.469	-0.18795					22	12	3	0	0	0	0.027866	1	6589	6589		50.025	16.509	1	346340			84401	15600	58882	58974	93425	93425					0.07467397248069574
VKKPPKEQRSI	11	Unmodified	_VKKPPKEQRSI_					0	0	0		ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	ENSG00000154839|ENST00000285116|SKA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2808837890625	3	437.269866	1308.78777	-0.067139	-2.9358E-05	-3.6847	-0.0016112	-3.7519	-0.0016406	437.2681798961521	20.723	1.3767	20.5	20.216	21.593	-0.22344					47	27	3	0	0	0	0.024734	1	648	648		36.528	21.834	1	226530			84402	6438	58883	58975	93426	93426					0.1457270116827658
VKKPTVMW	8	Unmodified	_VKKPTVMW_					0	0	0		ENST00000354416.7_1_X:118753668-118753848:-|nuORF	ENST00000354416.7_1_X:118753668-118753848:-|nuORF	ENST00000354416.7_1_X:118753668-118753848:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.8036193847656	2	494.786056	987.557558	1.763	0.00087232	-2.0406	-0.0010096	-0.27754	-0.00013732	494.78629891656726	23.592	0.54004	23.4	23.209	23.749	-0.19117					20	12	3	0	0	0	0.027866	1	895	895		20.482	0	1	72470			84403	12623	58884	58976	93427	93427					0.06328196301774369
VKKQLLHS	8	Unmodified	_VKKQLLHS_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000146731|P40227-2|CCT6A;ENST00000466479.1_1_7:56130338-56130775:+|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7906188964844	2	476.800552	951.58655	-0.2737	-0.0001305	-1.1938	-0.0005692	-1.4675	-0.0006997	476.79986445184755	53.374	0.75858	53.469	52.906	53.664	0.095669					28	20	2	0	0	0	0.027866	1	5669	5669		31.955	7.7521	1	118600			84404	4575;18273	58885	58977	93428	93428					0.10882056922412175
VKKQRPLLP	9	Unmodified	_VKKQRPLLP_					0	0	0		nc|ENSG00000101040|Q9ULU4-2|ZMYND8;nc|ENSG00000101040|Q9ULU4-4|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	nc|ENSG00000101040|Q9ULU4-2|ZMYND8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8162841796875	2	539.858401	1077.70225	-1.5523	-0.00083805	3.2503	0.0017547	1.698	0.00091667	539.8603388112004	45.676	0.37238	45.474	45.226	45.598	-0.20226					15	10	2	0	0	0	0.024457	1	4300	4300		29.15	11.785	1	211870			84405	2278	58886	58978	93429	93429					0.16650580773261936
VKKQVEELN	9	Unmodified	_VKKQVEELN_					0	0	0			REV__ENSG00000118473|ENST00000371037|SGIP1	REV__ENSG00000118473|ENST00000371037|SGIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8101806640625	2	543.811313	1085.60807	-1.6367	-0.00089008	0.63912	0.00034756	-0.99763	-0.00054252	543.811625998734	44.239	1.0666	44.019	43.562	44.628	-0.21939					74	28	4	0	0	0	0.033448	1	4091	4091		138.83	0	1	9084800	+		84406	22406	58887	58979	93430	93430					0.06869397160471635
VKKRAIVKKLP	11	Unmodified	_VKKRAIVKKLP_					0	0	0		PSMD1-ATP2C1|2|fusion;PSMD1-ATP2C1|4|fusion;PSMD1-ATP2C1|3|fusion;PSMD1-ATP2C1|1|fusion;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	PSMD1-ATP2C1|2|fusion	PSMD1-ATP2C1|2|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	427.3031005859375	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.719	1	70.426	69.926	70.926	-0.29291								0	0	0	1.7149	1	8513	8513		5.4129	2.2016	1				84407	19003	58888	58980	93431	93431					0.2580734920395571
VKKRCLILV	9	Unmodified	_VKKRCLILV_					0	0	0			REV__nc|ENSG00000116161|Q9HB71-3|CACYBP	REV__nc|ENSG00000116161|Q9HB71-3|CACYBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.305908203125	2	536.357179	1070.69981	-1.4101	-0.00075631	3.4181	0.0018333	2.008	0.001077	536.8625843251577	47.68	0.12283	47.739	47.647	47.769	0.059097					7	3	3	0	0	0	0.024541	1	4732	4732		18.324	6.8134	1	533640	+		84408	22262	58889	58981	93432	93432					0.16728409043935244
VKKRKEDL	8	Unmodified	_VKKRKEDL_					0	0	0			REV__ENSG00000104129|ENST00000220496|DNAJC17	REV__ENSG00000104129|ENST00000220496|DNAJC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7958068847656	2	508.316566	1014.61858	0.26121	0.00013278	-0.64811	-0.00032944	-0.3869	-0.00019667	508.31629184267945	21.242	0.3873	21.064	20.774	21.162	-0.17721					9	6	2	0	0	0	0.027866	1	643	643		57.811	9.8957	1	23393	+		84409	21419	58890	58982	93433	93433					0.11185424605560002
VKKRNDNL	8	Unmodified	_VKKRNDNL_					0	0	0		ENSG00000196604|ENST00000409914|POTEF	ENSG00000196604|ENST00000409914|POTEF	ENSG00000196604|ENST00000409914|POTEF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.81329345703125	2	493.790715	985.566878	-0.97201	-0.00047997	-2.367	-0.0011688	-3.339	-0.0016488	493.7894863314738	29.838	1.741	29.594	28.666	30.407	-0.24415					64	40	3	0	0	0	0.027866	1	1892	1892		76.847	5.4687	1	168900			84410	9900	58891	58983	93434	93434					0.07351680911654057
VKKRNLNPVF	10	Unmodified	_VKKRNLNPVF_					0	0	0		ENSG00000142765|ENST00000616558|SYTL1;nc|ENSG00000142765|Q8IYJ3-2|SYTL1	ENSG00000142765|ENST00000616558|SYTL1	ENSG00000142765|ENST00000616558|SYTL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	405.89971923828125	3	405.583785	1213.72953	0.38321	0.00015542	-0.035204	-1.4278E-05	0.348	0.00014114	405.58365473326256	23.443	0.54005	23.263	23.067	23.607	-0.17989					30	12	4	0	0	0	0.03519	1	970	970		20.837	0	1	506750			84411	5588	58892	58984	93435	93435					0.1312106431362281
VKKSSVGPKSD	11	Unmodified	_VKKSSVGPKSD_					0	0	0			REV__NUFIP2|p.F315Vfs*2|1|0.37|ENSG00000108256|chr17:29287052-29287053|-/T|frameshift_variant	REV__NUFIP2|p.F315Vfs*2|1|0.37|ENSG00000108256|chr17:29287052-29287053|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.3219604492188	2	566.322045	1130.62954	0.46208	0.00026169	-0.11181	-6.3323E-05	0.35027	0.00019836	566.3219869268645	106.01	0.50353	105.85	105.65	106.16	-0.16132					58	22	4	0	0	0	0.99129	1	13194	13194		38.754	0.94209	1	515910	+		84412	37299	58893	58985	93436	93436					0.06944782189179932
VKKTFETTT	9	Unmodified	_VKKTFETTT_					0	0	0			REV__ENST00000526265.5_1_11:82984683-82985032:-|nuORF	REV__ENST00000526265.5_1_11:82984683-82985032:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.3048095703125	2	527.792589	1053.57063	0.82873	0.0004374	-0.57396	-0.00030293	0.25476	0.00013446	528.2930339125514	97.778	1.0546	97.776	97.501	98.556	-0.0020828					33	24	2	0	0	0	0.024209	1	12456	12456		47.657	9.8458	1	79211	+		84413	34438	58894	58986	93437	93437					0.045983058948422695
VKKTWEKP	8	Unmodified	_VKKTWEKP_					0	0	0			REV__ENSG00000100994|ENST00000216962|PYGB	REV__ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7666931152344	2	508.300384	1014.58622	0.49061	0.00024938	-0.076644	-3.8958E-05	0.41397	0.00021042	508.30029699902127	65.756	0.57558	65.756	65.529	66.105	0					25	14	2	0	0	0	0.027866	1	7788	7788		57.811	0	1	1018600	+		84414	21172	58895	58987	93438	93438					0.07950637202554844
VKKVEGTK	8	Unmodified	_VKKVEGTK_					0	0	0			REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	445.7457275390625	2	444.779285	887.544017	-0.19563	-8.7011E-05	0.4175	0.00018569	0.22187	9.8683E-05	444.77925167325094	24.471	0.50574	24.256	24.044	24.55	-0.2151					15	11	2	0	0	0	0.027866	1	1108	1108		11.511	0.64546	1	65152	+		84415	20333	58896	58988	93439	93439					0.09574661794181338
VKKVKKFL	8	Unmodified	_VKKVKKFL_					0	0	0			REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.2866516113281	2	495.347138	988.679722	-0.12358	-6.1215E-05	3.0477	0.0015096	2.9241	0.0014484	495.3482952494757	67.536	0.11948	67.248	67.187	67.307	-0.28834					4	2	2	0	0	0	0.027866	1	8033	8033		8.2313	0	1	24228	+		84416	32632	58897	58989	93440	93440					0.18492981375641193
VKKVKKFL	8	Unmodified	_VKKVKKFL_					0	0	0			REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	495.29248046875	2	495.347138	988.679722	-0.50853	-0.0002519	2.8412	0.0014074	2.3327	0.0011555	495.3481506013571	68.479	0.19951	68.217	68.142	68.341	-0.26165					5	4	2	0	0	0	0.027866	1	7910	7910		7.6903	6.3626	1	68684	+		84417	32632	58897	58989	93441	93441					0.18492981375641193
VKKVKKFL	8	Unmodified	_VKKVKKFL_					0	0	0			REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2977600097656	2	495.347138	988.679722	-0.002695	-1.335E-06	-2.7346	-0.0013546	-2.7373	-0.0013559	495.3464872138277	54.673	0.17876	54.442	54.315	54.494	-0.23087					5	4	2	0	0	0	0.027866	1	5797	5797		8.2313	4.2461	1	80233	+		84418	32632	58897	58989	93442	93442					0.18492981375641193
VKKVNGLLERK	11	Unmodified	_VKKVNGLLERK_					0	0	0			REV__USP29|p.H681Qfs*23|1|0.07|ENSG00000131864|chr19:57130717-57130718|-/ACGGG|frameshift_variant	REV__USP29|p.H681Qfs*23|1|0.07|ENSG00000131864|chr19:57130717-57130718|-/ACGGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.7847595214844	3	428.610111	1282.8085	0.089094	3.8187E-05	-3.0871	-0.0013232	-2.998	-0.001285	428.942949369136	25.932	0.14746	25.761	25.659	25.807	-0.17078					5	3	2	0	0	0	0.024779	1	1281	1281		11.932	0	1	70251	+		84419	23240	58898	58990	93443	93443					0.17841291547938454
VKKVRKLT	8	Unmodified	_VKKVRKLT_					0	0	0		ENST00000369577.7_1_6:87966729-87966783:+|nuORF	ENST00000369577.7_1_6:87966729-87966783:+|nuORF	ENST00000369577.7_1_6:87966729-87966783:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2919921875	2	486.339844	970.665135	-0.0598	-2.9083E-05	3.1765	0.0015449	3.1167	0.0015158	486.3414289215569	60.175	0.10886	59.927	59.873	59.982	-0.24842					4	2	2	0	0	0	0.027866	1	6678	6678		7.6903	0	1	56073			84420	12928	58899	58991	93444	93444					0.17862909227505952
VKKVRKRTHK	10	Unmodified	_VKKVRKRTHK_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2643127441406	3	427.285962	1278.83606	0.016766	7.1641E-06	4.1193	0.0017601	4.1361	0.0017673	427.2871862992226	54.325	0.656	54.177	53.921	54.577	-0.14723					26	18	2	0	0	0	0.03519	1	5941	5941		30.569	0	1	264650			84421	7259	58900	58992	93445	93445					0.2077923959882355
VKKVVNPLF	9	Unmodified	_VKKVVNPLF_					0	0	0		ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000416120.1_1_6:64259201-64259360:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7589721679688	2	522.334227	1042.6539	-0.58548	-0.00030582	0.74783	0.00039062	0.16235	8.4801E-05	522.3344664585801	58.996	0.51596	58.808	58.584	59.1	-0.18795					19	12	2	0	0	0	0.024541	1	6506	6506		24.203	1.1603	1	214530			84422	13893	58901	58993	93446	93446					0.13428087133365807
VKKYLSLP	8	Unmodified	_VKKYLSLP_					0	0	0			REV__ENSG00000184967|ENST00000330579|NOC4L	REV__ENSG00000184967|ENST00000330579|NOC4L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.2710266113281	2	474.299853	946.585153	0.036891	1.7497E-05	-0.0086866	-4.1201E-06	0.028204	1.3377E-05	474.2999381365936	79.739	0.50031	79.76	79.397	79.897	0.021439					17	11	2	0	0	0	0.027866	1	9838	9838		55.504	0	1	84315	+		84423	27714	58902	58994	93447	93447					0.10972422833663131
VKKYQEGL	8	Unmodified	_VKKYQEGL_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7770690917969	2	482.776742	963.538931	0.52381	0.00025288	-0.19218	-9.2781E-05	0.33163	0.0001601	482.776321729423	97.206	1.4382	97.215	96.751	98.189	0.0089111					62	32	3	0	0	0	1.0009	1	12403	12403		37.159	2.9866	1	987190			84424	18383	58903	58995	93448	93448					0.05570357931560466
VKLAMKRIL	9	Unmodified	_VKLAMKRIL_					0	0	0			REV__ENST00000464735.1_1_13:24164310-24168479:+|nuORF	REV__ENST00000464735.1_1_13:24164310-24168479:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3423461914062	2	536.357179	1070.69981	-0.81084	-0.0004349	1.4032	0.00075262	0.59236	0.00031772	536.3582567334338	27.206	0.21724	27.206	27.144	27.361	0					6	5	2	0	0	0	0.024506	1	1482	1482		16.473	0	1	190070	+		84425	32987	58904	58996	93449	93449					0.1672840904395798
VKLARDVNI	9	Unmodified	_VKLARDVNI_					0	0	0			REV__nc|ENSG00000183580|Q9UJT9-2|FBXL7	REV__nc|ENSG00000183580|Q9UJT9-2|FBXL7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.3169555664062	2	514.316566	1026.61858	-0.80494	-0.000414	-0.056856	-2.9242E-05	-0.8618	-0.00044324	514.3164871489489	32.602	1.0809	32.602	32.34	33.421	0					62	28	4	0	0	0	0.45795	1	2300	2300		62.107	0	1	5265600	+		84426	27586	58905	58997	93450	93450					0.10633424605566688
VKLAWRAK	8	Unmodified	_VKLAWRAK_					0	0	0			REV__nc|ENSG00000145113|Q99102-17|MUC4	REV__nc|ENSG00000145113|Q99102-17|MUC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2922668457031	2	486.311087	970.60762	-0.93184	-0.00045316	1.5006	0.00072974	0.56872	0.00027658	486.31189653476383	81.72	0.1593	81.745	81.619	81.779	0.025711					6	3	2	0	0	0	0.027866	1	10098	10098		31.955	4.0726	1	160720	+		84427	36751	58906	58998	93451	93451					0.12114067021923347
VKLCAQFPLQ	10	Unmodified	_VKLCAQFPLQ_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	573.2860717773438	2	573.820627	1145.6267	-0.34461	-0.00019774	1.7089	0.00098063	1.3643	0.00078288	573.8216075004752	64.32	1.8116	64.057	63.289	65.101	-0.2626					68	48	2	0	0	0	0.03519	1	7539	7539		42.396	3.1433	1	209420	+		84428	26845	58907	58999	93452	93452					0.05971235530660124
VKLCLILI	8	Unmodified	_VKLCLILI_					0	0	0			REV__ENST00000251527.9_1_7:158524237-158524429:-|nuORF	REV__ENST00000251527.9_1_7:158524237-158524429:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2354431152344	2	457.808999	913.603446	0.13041	5.9705E-05	3.7672	0.0017247	3.8977	0.0017844	457.8104681780897	22.354	0.47467	22.152	21.855	22.33	-0.20199					20	9	3	0	0	0	0.027866	1	755	755		21.702	0	1	87763	+		84429	29507	58908	59000	93453	93453					0.1431884148400968
VKLFIGLVA	9	Unmodified	_VKLFIGLVA_					0	0	0			REV__ENST00000520996.5_1_8:86376310-86386651:+|nuORF	REV__ENST00000520996.5_1_8:86376310-86386651:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2923278808594	2	480.318046	958.621539	-0.75697	-0.00036359	-1.1199	-0.00053789	-1.8768	-0.00090147	480.31752748925624	56.123	0.17931	55.908	55.745	55.924	-0.21551					6	4	2	0	0	0	0.024541	1	6031	6031		19.36	6.4008	1	312080	+		84430	21429	58909	59001	93454	93454					0.14057299730359318
VKLFKGILK	9	Unmodified	_VKLFKGILK_					0	0	0		ENSG00000139780|ENST00000267273|METTL21C	ENSG00000139780|ENST00000267273|METTL21C	ENSG00000139780|ENST00000267273|METTL21C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.323486328125	2	523.360245	1044.70594	-0.82943	-0.00043409	-1.2411	-0.00064953	-2.0705	-0.0010836	523.8606728949702	67.186	0.11855	67.186	67.126	67.245	0					4	2	2	0	0	0	0.024523	1	8015	8015		37.159	12.956	1	60361			84431	5367	58910	59002	93455	93455					0.18537250547115036
VKLFRSLIE	9	Unmodified	_VKLFRSLIE_					0	0	0			REV__chr10:5001681-5002704|117|87.4|0.8|6.76|-|1|AKR1C2,None|1	REV__chr10:5001681-5002704|117|87.4|0.8|6.76|-|1|AKR1C2,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.7886962890625	2	552.842416	1103.67028	0.53375	0.00029508	2.2197	0.0012271	2.7534	0.0015222	552.8434132456827	18.824	0.3946	18.668	18.495	18.889	-0.15637					10	7	2	0	0	0	0.024541	1	364	364		19.997	3.5236	1	50857	+		84432	19341	58911	59003	93456	93456					0.12259168299465273
VKLFRSLIE	9	Unmodified	_VKLFRSLIE_					0	0	0			REV__chr10:5001681-5002704|117|87.4|0.8|6.76|-|1|AKR1C2,None|1	REV__chr10:5001681-5002704|117|87.4|0.8|6.76|-|1|AKR1C2,None|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.842416	1103.67028	0.39751	0.00021976	1.8872	0.0010433	2.2847	0.0012631	552.8431534395535	18.853	0.44408	18.65	18.46	18.904	-0.20371	0.0060932	0.00044795	NaN	19.997	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37478	+		84433	19341	58911	59003							0.12259168299465273
VKLFRSLIE	9	Unmodified	_VKLFRSLIE_					0	0	0			REV__chr10:5001681-5002704|117|87.4|0.8|6.76|-|1|AKR1C2,None|1	REV__chr10:5001681-5002704|117|87.4|0.8|6.76|-|1|AKR1C2,None|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	552.842416	1103.67028	2.5249	0.0013959	-1.9403	-0.0010727	0.58461	0.0003232	552.8410439167782	18.856	0.69479	18.613	18.175	18.869	-0.24256	-0.030598	-0.0037841	NaN	19.997	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49369	+		84434	19341	58911	59003							0.12259168299465273
VKLFTAHNN	9	Unmodified	_VKLFTAHNN_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3250122070312	2	522.285266	1042.55598	-1.5175	-0.00079258	3.0575	0.0015969	1.54	0.00080431	522.2864727219173	49.389	0.67063	49.464	49.022	49.693	0.074192					32	17	3	0	0	0	0.023817	1	5033	5033		42.396	0	1	405130			84435	4938	58912	59004	93457	93457					0.03640278537386621
VKLGIRND	8	Unmodified	_VKLGIRND_					0	0	0			REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7784423828125	2	457.774534	913.534515	0.1695	7.7594E-05	-0.07237	-3.3129E-05	0.097132	4.4464E-05	457.77441785637654	42.825	0.61351	42.686	42.413	43.027	-0.13929					27	16	2	0	0	0	0.027866	1	3986	3986		31.955	6.5047	1	2876800	+		84436	24916	58913	59005	93458	93458					0.07428893508654255
VKLGYKLSL	9	Unmodified	_VKLGYKLSL_					0	0	0			REV__ENST00000547357.5_1_12:82752311-82853681:+|nuORF	REV__ENST00000547357.5_1_12:82752311-82853681:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.78948974609375	2	510.826235	1019.63792	0.30411	0.00015535	2.5465	0.0013008	2.8506	0.0014561	510.82760661536474	85.652	0.41894	85.515	85.326	85.745	-0.13753					14	9	2	0	0	0	0.024457	1	10374	10374		37.159	1.9584	1	75240	+		84437	22946	58914	59006	93459	93459					0.12888380896470153
VKLHLIWTRFL	11	Unmodified	_VKLHLIWTRFL_					0	0	0		ENST00000293362.7_1_17:40990986-40991166:+|nuORF	ENST00000293362.7_1_17:40990986-40991166:+|nuORF	ENST00000293362.7_1_17:40990986-40991166:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.7622985839844	3	475.962485	1424.86563	0.51954	0.00024728	-3.4381	-0.0016364	-2.9185	-0.0013891	475.9607391172343	63.756	1.3488	63.504	63.156	64.505	-0.25141					111	36	5	0	0	0	0.024792	1	7556	7556		13.508	5.8285	1	6049200			84438	11806	58915	59007	93460	93460					0.1701875882429249
VKLHLPISE	9	Unmodified	_VKLHLPISE_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.7813110351562	2	518.313492	1034.61243	-0.091223	-4.7282E-05	-0.44394	-0.0002301	-0.53517	-0.00027738	518.3129763876253	42.24	0.30181	42.24	42.02	42.322	0					15	8	2	0	0	0	0.024495	1	3838	3838		34.173	0	1	225230			84439	4420	58916	59008	93461	93461					0.09650906374031365
VKLHLPISE	9	Unmodified	_VKLHLPISE_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.313492	1034.61243	-0.47235	-0.00024482	0.31562	0.00016359	-0.15673	-8.1233E-05	518.313501528218	42.453	0.31122	42.479	42.255	42.566	0.026012	0.11938	0.00047442	NaN	34.173	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127520			84440	4420	58916	59008							0.09650906374031365
VKLIHIPIN	9	Unmodified	_VKLIHIPIN_					0	0	0		ENST00000461536.1_1_7:54823470-54826890:-|nuORF;ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF	ENST00000461536.1_1_7:54823470-54826890:-|nuORF	ENST00000461536.1_1_7:54823470-54826890:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2731323242188	2	523.839677	1045.6648	-0.6611	-0.00034631	0.143	7.4908E-05	-0.5181	-0.0002714	523.8396405564513	62.752	1.9452	62.512	62.419	64.364	-0.23926					74	51	2	0	0	0	0.024477	1	7304	7304		44.117	0	1	356690			84441	4605	58917	59009	93462	93462					0.14379489507678045
VKLITKII	8	Unmodified	_VKLITKII_					0	0	0			REV__ENSG00000172377|ENST00000641439|OR9I1	REV__ENSG00000172377|ENST00000641439|OR9I1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.2792053222656	2	464.333696	926.652839	-0.24513	-0.00011382	0.092096	4.2763E-05	-0.15303	-7.1057E-05	464.3335827333062	52.003	0.63602	51.884	51.646	52.282	-0.11875					32	16	3	0	0	0	0.027866	1	5345	5345		29.15	0	1	797280	+		84442	26666	58918	59010	93463	93463					0.18657872764458716
VKLIVQDKVLS	11	Unmodified	_VKLIVQDKVLS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.392822265625	2	621.395013	1240.77547	-1.458	-0.00090597	-2.1618	-0.0013434	-3.6198	-0.0022493	621.3934809680574	104.25	0.27953	104.12	104.02	104.3	-0.12927					17	10	2	0	0	0	1.0655	1	12997	12997		20.837	0.80668	1	95721	+		84443	22314	58919	59011	93464	93464					0.1647166470522734
VKLKHGAEGE	10	Unmodified	_VKLKHGAEGE_					0	0	0			REV__nc|ENSG00000105227|Q9BXM0-3|PRX	REV__nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.3192138671875	2	534.29583	1066.57711	-1.0954	-0.00058529	0.40209	0.00021484	-0.69336	-0.00037046	534.2958890203453	33.293	0.79859	33.299	32.85	33.649	0.0066261					53	21	3	0	0	0	0.03519	1	2426	2426		40.778	0	1	595350	+		84444	21502	58920	59012	93465	93465					0.04648243846236255
VKLKLVSID	9	Unmodified	_VKLKLVSID_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.77783203125	2	507.831517	1013.64848	-1.5126	-0.00076813	0.689	0.00034989	-0.82357	-0.00041824	507.8317914718104	49.223	0.33276	49.297	49.133	49.465	0.074196					12	8	2	0	0	0	0.024436	1	5032	5032		10.866	0	1	73563	+		84445	20738	58921	59013	93466	93466					0.1422036355088494
VKLLDLSSN	9	Unmodified	_VKLLDLSSN_					0	0	0		nc|ENSG00000285053|Q15813-2|TBCE;nc|ENSG00000285053|Q15813|TBCE;ENST00000472011.5_1_1:235582749-235612074:+|nuORF	nc|ENSG00000285053|Q15813-2|TBCE	nc|ENSG00000285053|Q15813-2|TBCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7889709472656	2	494.787307	987.560061	0.67145	0.00033222	2.9636	0.0014664	3.6351	0.0017986	494.78847282340365	88.492	1.311	88.492	88.044	89.355	0					67	30	4	0	0	0	0.34489	1	11165	11165		69.628	2.134	1	1579400			84446	18813	58922	59014	93467	93467					0.06578323240432837
VKLLDLSSN	9	Unmodified	_VKLLDLSSN_					0	0	0		nc|ENSG00000285053|Q15813-2|TBCE;nc|ENSG00000285053|Q15813|TBCE;ENST00000472011.5_1_1:235582749-235612074:+|nuORF	nc|ENSG00000285053|Q15813-2|TBCE	nc|ENSG00000285053|Q15813-2|TBCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7893371582031	2	494.787307	987.560061	0.66532	0.00032919	2.8556	0.0014129	3.5209	0.0017421	494.7884529949755	88.467	1.1826	88.439	87.968	89.151	-0.027657					65	27	4	0	0	0	0.40693	1	11128	11128		65.465	5.1714	1	1659000			84447	18813	58922	59014	93468	93468					0.06578323240432837
VKLLGVIIEEG	11	Unmodified	_VKLLGVIIEEG_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	585.3436279296875	2	585.360639	1168.70673	-0.26561	-0.00015548	-1.3252	-0.00077573	-1.5908	-0.00093121	585.3599107570371	90.923	0.82703	90.784	90.036	90.863	-0.13942					27	19	2	0	0	0	0.024774	1	11133	11133		7.8045	0	1	165300			84448	5111	58923	59015	93469	93469					0.12912000405503932
VKLLLEMKRL	10	Unmodified	_VKLLLEMKRL_					0	0	0			REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146	REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.8994750976562	2	621.901951	1241.78935	0.57434	0.00035718	-1.8775	-0.0011676	-1.3031	-0.00081043	621.9007683682157	106.12	0.1525	105.96	105.87	106.03	-0.16133					10	6	2	0	0	0	1.1096	1	13198	13198		15.642	0.3087	1	70085	+		84449	19255	58924	59016	93470	93470					0.17812618932657642
VKLLSRKS	8	Unmodified	_VKLLSRKS_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	466.2535705566406	2	465.808377	929.6022	-0.21371	-9.9546E-05	-1.4967	-0.00069718	-1.7104	-0.00079672	465.8073962263709	26.527	0.16141	26.359	26.301	26.462	-0.16816					5	3	2	0	0	0	0.027866	1	1391	1391		7.6903	0	1	35069	+		84450	28124	58925	59017	93471	93471					0.1345834343945853
VKLLVEELP	9	Unmodified	_VKLLVEELP_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD;DMD|p.L3148Cfs*7|1|0.69|ENSG00000198947|chrX:31209619-31209619|G/-|frameshift_variant	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8230590820312	2	520.323525	1038.6325	-1.1207	-0.00058315	-2.999	-0.0015605	-4.1198	-0.0021436	520.3220031055255	80.768	4.5521	80.792	80.234	84.786	0.023911					203	108	3	0	0	0	0.024323	1	10202	10202		53.351	7.3995	1	74458000			84451	10259	58926	59018	93472	93472					0.11472657313993295
VKLMSTTKV	9	Unmodified	_VKLMSTTKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.758544921875	2	503.801903	1005.58925	0.2482	0.00012505	-3.7526	-0.0018905	-3.5044	-0.0017655	503.79985955832353	59.281	1.1086	59.366	59.063	60.171	0.085686					52	29	3	0	0	0	0.024487	1	6756	6756		11.511	0	1	1690500	+		84452	36804	58927	59019	93473	93473					0.08668144265061528
VKLNNNEL	8	Unmodified	_VKLNNNEL_					0	0	0		nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3;ENST00000548968.1_1_12:59307761-59313848:-|nuORF	nc|ENSG00000139263|Q6UXM1-2|LRIG3	nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.7874755859375	2	472.263999	942.513445	0.31966	0.00015097	0.95201	0.0004496	1.2717	0.00060057	472.2644607307189	56.223	0.88567	56.223	55.892	56.778	0					55	24	3	0	0	0	0.027866	1	6202	6202		74.255	0	1	1406800			84453	5318	58928	59020	93474	93474					0.03988883409135724
VKLQKTVI	8	Unmodified	_VKLQKTVI_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.8125915527344	2	464.813128	927.611703	-0.78326	-0.00036407	0.2922	0.00013582	-0.49106	-0.00022825	464.81328090009987	38.134	2.684	37.913	37.542	40.226	-0.22149					161	72	5	0	0	0	0.15677	2	3118	3118;3142		147.69	0	1	33345000	+		84454	28299	58929	59021	93475;93476	93475					0.1450011172498762
VKLQRLET	8	Unmodified	_VKLQRLET_					0	0	0			REV__ENSG00000128596|ENST00000297788|CCDC136	REV__ENSG00000128596|ENST00000297788|CCDC136	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.2533874511719	2	493.803291	985.59203	1.138	0.00056194	-1.8431	-0.00091015	-0.70515	-0.0003482	493.8035362381691	55.538	0.21804	55.538	55.427	55.645	0					6	5	2	0	0	0	0.027866	1	6154	6154		16.473	0	1	58339	+		84455	22999	58930	59022	93477	93477					0.09865735714231505
VKLRSLIN	8	Unmodified	_VKLRSLIN_					0	0	0		ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.8085632324219	2	471.808377	941.6022	0.65627	0.00030963	-0.63977	-0.00030185	0.016498	7.7838E-06	471.80798184376744	40.57	1.0797	40.57	40.281	41.36	0					76	30	4	0	0	0	0.42912	1	3569	3569		93.195	10.955	1	8176800			84456	6531	58931	59023	93478	93478					0.12906343439465218
VKLRSLIN	8	Unmodified	_VKLRSLIN_					0	0	0		ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.8085021972656	2	471.808377	941.6022	0.07174	3.3848E-05	-0.15796	-7.4528E-05	-0.086222	-4.068E-05	471.80821029540795	40.758	1.2493	40.781	40.494	41.743	0.023006					82	35	5	0	0	0	0.42912	1	3542	3542		93.195	5.4412	1	8657500			84457	6531	58931	59023	93479	93479					0.12906343439465218
VKLSGHLL	8	Unmodified	_VKLSGHLL_					0	0	0			REV__nc|ENSG00000138614|Q96SY0-4|INTS14	REV__nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	433.7767333984375	2	433.776545	865.538538	-0.48511	-0.00021043	0.6594	0.00028603	0.17429	7.5602E-05	433.77670826378187	29.509	1.0213	29.336	28.981	30.002	-0.17258					55	23	3	0	0	0	0.6536	1	1804	1804		71.296	5.4925	1	2297100	+		84458	23866	58932	59024	93480	93480					0.10038983002368695
VKLSKQLIG	9	Unmodified	_VKLSKQLIG_					0	0	0			REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	REV__DNAH10|p.K4139Rfs*69|1|0.16|ENSG00000197653|chr12:123930556-123930556|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2696533203125	2	493.32386	984.633166	0.45969	0.00022678	-0.87004	-0.00042921	-0.41035	-0.00020243	493.3233301956698	25.331	0.45613	25.159	24.993	25.449	-0.17151					22	10	3	0	0	0	0.024374	1	1177	1177		32.812	0	1	215800	+		84459	19683	58933	59025	93481	93481					0.14023496753702602
VKLSLWTKEFY	11	Unmodified	_VKLSLWTKEFY_					0	0	0			REV__ENSG00000134262|ENST00000369569|AP4B1	REV__ENSG00000134262|ENST00000369569|AP4B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7453918457031	3	471.930739	1412.77039	-0.60677	-0.00028635	1.851	0.00087356	1.2443	0.00058721	472.26581477415255	48.949	0.43497	49.023	48.807	49.242	0.074196					17	11	2	0	0	0	0.024723	1	4950	4950		44.639	22.859	1	130790	+		84460	23432	58934	59026	93482	93482					0.08051360842614486
VKLSVRSNI	9	Unmodified	_VKLSVRSNI_					0	0	0			REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.8265380859375	2	508.316566	1014.61858	-1.0382	-0.00052773	0.84382	0.00042893	-0.19438	-9.8807E-05	508.31682475698614	40.259	0.45689	40.029	39.851	40.308	-0.23021					15	11	2	0	0	0	0.024405	1	3497	3497		35.618	3.6634	1	143290	+		84461	19639	58935	59027	93483	93483					0.11185424605560002
VKLSVRSNI	9	Unmodified	_VKLSVRSNI_					0	0	0			REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.316566	1014.61858	-0.46303	-0.00023536	0.98983	0.00050315	0.5268	0.00026778	508.31666463356584	40.202	0.36974	40.053	39.783	40.153	-0.1497	-0.0093147	5.501E-05	NaN	35.618	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172110	+		84462	19639	58935	59027							0.11185424605560002
VKLSVRSNI	9	Unmodified	_VKLSVRSNI_					0	0	0			REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	REV__CYLD|p.C934Afs*20|1|0.26|ENSG00000083799|chr16:50796433-50796434|-/GG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.316566	1014.61858	-0.2907	-0.00014777	1.0742	0.00054604	0.7835	0.00039827	508.31647569327083	40.329	0.33503	40.104	39.852	40.187	-0.225	0.042371	0.00014079	NaN	35.618	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163480	+		84463	19639	58935	59027							0.11185424605560002
VKLTMLTRS	9	Unmodified	_VKLTMLTRS_					0	0	0			REV__ENST00000396595.7_1_4:41615083-41615657:+|nuORF	REV__ENST00000396595.7_1_4:41615083-41615657:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.7979736328125	2	524.812802	1047.61105	-0.74864	-0.0003929	-2.838	-0.0014894	-3.5866	-0.0018823	524.8110783669435	39.891	0.45533	39.914	39.671	40.126	0.023727					23	12	3	0	0	0	0.024511	1	3428	3428		32.812	0	1	194450	+		84464	31741	58936	59028	93484	93484					0.08914949013592377
VKLTQHLAA	9	Unmodified	_VKLTQHLAA_					0	0	0		nc|ENSG00000101846|P08842|STS;ENSG00000101846|ENST00000674429|STS;ENST00000412493.1_1_Y:17659176-17661596:+|nuORF	nc|ENSG00000101846|P08842|STS	nc|ENSG00000101846|P08842|STS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.27215576171875	2	490.798009	979.581465	-0.82968	-0.0004072	0.85304	0.00041867	0.023368	1.1469E-05	490.79837630031176	31.17	0.44313	30.929	30.669	31.112	-0.24109					23	10	3	0	0	0	0.024477	1	2060	2060		27.882	0	1	220650			84465	2352	58937	59029	93485	93485					0.09085753059787294
VKLTSGKP	8	Unmodified	_VKLTSGKP_					0	0	0			REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.90576171875	2	415.260728	828.506903	1.3735	0.00057038	-1.0522	-0.00043695	0.32132	0.00013343	415.2602695397028	20.322	1.1814	20.39	20.119	21.3	0.068901					51	23	4	0	0	0	0.027866	1	574	574		11.511	0	1	2384600	+		84466	34896	58938	59030	93486	93486					0.08578990248417995
VKLTSRTIP	9	Unmodified	_VKLTSRTIP_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8233337402344	2	507.818941	1013.62333	0.89831	0.00045618	-1.2365	-0.00062794	-0.33824	-0.00017176	507.81825573639713	59.829	0.62057	59.829	59.598	60.219	0					47	16	4	0	0	0	0.024397	1	6911	6911		56.721	18.91	1	2706100	+		84467	24305	58939	59031	93487	93487					0.1170630874833023
VKLTTVNAE	9	Unmodified	_VKLTTVNAE_					0	0	0			REV__CDH1|p.V392_I393del|1|0.3|ENSG00000039068|chr16:68813347-68813352|TCGTAA/-|inframe_deletion	REV__CDH1|p.V392_I393del|1|0.3|ENSG00000039068|chr16:68813347-68813352|TCGTAA/-|inframe_deletion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2683410644531	2	487.779482	973.544411	0.21881	0.00010673	-0.71567	-0.00034909	-0.49685	-0.00024236	487.7790228020094	47.47	0.69119	47.317	46.978	47.669	-0.15301					50	19	4	0	0	0	0.024374	1	4774	4774		19.104	4.2386	1	2196100	+		84468	19278	58940	59032	93488	93488					0.05658036723366422
VKLTTVNAE	9	Unmodified	_VKLTTVNAE_					0	0	0			REV__CDH1|p.V392_I393del|1|0.3|ENSG00000039068|chr16:68813347-68813352|TCGTAA/-|inframe_deletion	REV__CDH1|p.V392_I393del|1|0.3|ENSG00000039068|chr16:68813347-68813352|TCGTAA/-|inframe_deletion	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.779482	973.544411	-1.1406	-0.00055638	0.59052	0.00028804	-0.55012	-0.00026834	487.7796571081003	47.251	0.75146	47.31	46.957	47.708	0.059097	-0.0047249	0.00072285	NaN	30.318	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2058400	+		84469	19278	58940	59032							0.05658036723366422
VKLVEKRA	8	Unmodified	_VKLVEKRA_					0	0	0		ENST00000598285.1_1_19:48259921-48260259:+|nuORF;ENSG00000105373|ENST00000246802|NOP53	ENST00000598285.1_1_19:48259921-48260259:+|nuORF	ENST00000598285.1_1_19:48259921-48260259:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.29473876953125	2	471.808377	941.6022	-0.070022	-3.3037E-05	-0.52469	-0.00024755	-0.59471	-0.00028059	471.8083294710064	40.819	0.36419	40.591	40.404	40.768	-0.22724					11	9	2	0	0	0	0.027866	1	3565	3565		45.952	0	1	109440			84470	2663	58941	59033	93489	93489					0.12906343439465218
VKLVKPHA	8	Unmodified	_VKLVKPHA_					0	0	0			REV__ENST00000381359.5_2_15:44085983-44086238:+|nuORF	REV__ENST00000381359.5_2_15:44085983-44086238:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	446.8028564453125	2	446.292362	890.570172	0.80279	0.00035828	-1.0909	-0.00048684	-0.28807	-0.00012856	446.29181124250755	72.238	0.57555	71.957	71.769	72.344	-0.28124					20	14	2	0	0	0	0.027866	1	8716	8716		47.916	12.715	1	234930	+		84471	31517	58942	59034	93490	93490					0.1205097575631271
VKLVNLGF	8	Unmodified	_VKLVNLGF_					0	0	0		ENSG00000183734|ENST00000331289|ASCL2;ENSG00000139352|ENST00000266744|ASCL1	ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	446.218994140625	2	445.278921	888.543289	-0.75447	-0.00033595	0.70182	0.00031251	-0.05265	-2.3444E-05	445.2791875776685	66.027	0.40776	65.813	65.629	66.037	-0.21327					15	9	2	0	0	0	0.027866	1	7585	7585		7.6903	0	1	232110			84472	5328	58943	59035	93491	93491					0.09455867145140928
VKLVPSSSYI	10	Unmodified	_VKLVPSSSYI_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8196411132812	2	546.818607	1091.62266	-0.48313	-0.00026418	2.9384	0.0016068	2.4553	0.0013426	546.821116872408	64.405	1.0762	64.451	63.939	65.015	0.045502					79	28	5	0	0	0	0.77808	1	7505	7505		62.107	0	1	8562400			84473	18052	58944	59036	93492	93492					0.08051469308611559
VKLVTGSLIA	10	Unmodified	_VKLVTGSLIA_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	500.823692	999.632832	1.0973	0.00054956	2.1838	0.0010937	3.2811	0.0016432	500.82381382620065	59.885	0.20577	59.885	59.745	59.951	0					6	5	2	0	0	0	0.03519	1	6843	6843		39.253	2.8061	1	62338			84474	6938	58945	59037	93493	93493					0.1330007703385263
VKLWLPSN	8	Unmodified	_VKLWLPSN_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3005676269531	2	478.781828	955.549102	-0.10643	-5.0955E-05	1.0624	0.00050864	0.95595	0.00045769	478.7821806889194	65.267	0.44135	65.304	65.117	65.559	0.037384					19	12	2	0	0	0	0.027866	1	7671	7671		30.504	12.179	1	355750	+		84475	20398	58946	59038	93494	93494					0.0695496565680287
VKLWSLNPD	9	Unmodified	_VKLWSLNPD_					0	0	0		ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	ENSG00000138615|ENST00000261883|CILP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2954711914062	2	536.295299	1070.57605	0.24224	0.00012991	3.8857	0.0020839	4.128	0.0022138	536.2983486733813	74.566	2.1755	74.566	74.34	76.516	0					83	55	3	0	0	0	0.2101	1	9138	9138		87.696	10.922	1	2790100			84476	5254	58947	59039	93495	93495					0.04358029477339187
VKMAIFPKV	9	Unmodified	_VKMAIFPKV_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|165|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|165|3|sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|165|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.763427734375	2	516.817356	1031.62016	-0.51861	-0.00026803	2.0804	0.0010752	1.5618	0.00080718	516.8178197174961	67.208	0.77818	67.208	66.672	67.45	0					22	18	2	0	0	0	0.024374	1	8022	8022		40.778	7.9657	1	167320			84477	17874	58948	59040	93496	93496					0.10561342369942395
VKMHQLSVT	9	Unmodified	_VKMHQLSVT_					0	0	0		ENSG00000152689|ENST00000403687|RASGRP3;nc|ENSG00000152689|Q8IV61-2|RASGRP3;ENST00000477927.1_1_2:33749528-33755971:+|nuORF	ENSG00000152689|ENST00000403687|RASGRP3	ENSG00000152689|ENST00000403687|RASGRP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.3053588867188	2	521.789327	1041.5641	0.26484	0.00013819	-2.2737	-0.0011864	-2.0088	-0.0010482	521.7885466045327	47.297	0.6303	47.144	46.776	47.406	-0.15301					17	16	2	0	0	0	0.023635	1	4747	4747		66.429	0	1	309260			84478	6295	58949	59041	93497	93497					0.0449808946250414
VKMKKSPLI	9	Unmodified	_VKMKKSPLI_					0	0	0			REV__ENSG00000088325|ENST00000300403|TPX2	REV__ENSG00000088325|ENST00000300403|TPX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7584838867188	2	522.335913	1042.65727	0.67997	0.00035517	-3.8024	-0.0019861	-3.1224	-0.001631	522.3336686181035	59.015	0.6344	58.774	58.583	59.218	-0.24165					22	15	2	0	0	0	0.024487	1	6488	6488		17.365	0	1	381880	+		84479	20811	58950	59042	93498	93498					0.13765013915713098
VKMKKVTKPC	10	Oxidation (M)	_VKM(Oxidation (M))KKVTKPC_		VKM(1)KKVTKPC		VKM(51)KKVTKPC	0	0	1		ENST00000480137.1_1_7:128450376-128461960:+|nuORF;ENSG00000128596|ENST00000297788|CCDC136;nc|ENSG00000128596|Q96JN2-4|CCDC136	ENST00000480137.1_1_7:128450376-128461960:+|nuORF	ENST00000480137.1_1_7:128450376-128461960:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3426513671875	2	589.343412	1176.67227	-0.33817	-0.0001993	-0.66363	-0.0003911	-1.0018	-0.0005904	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	0.94316	1	11187	11187		51.193	14.746	1	6196800			84480	4301	58951	59043	93499	93499		168			0.09100137721407009
VKMLHSNKD	9	Unmodified	_VKMLHSNKD_					0	0	0		nc|ENSG00000182175|Q96B86-3|RGMA;ENSG00000182175|ENST00000329082|RGMA;nc|ENSG00000182175|Q96B86-4|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3108520507812	2	536.284408	1070.55426	-0.42634	-0.00022864	1.3648	0.00073191	0.93844	0.00050327	536.7853478870811	53.586	0.182	53.586	53.509	53.691	0					5	4	2	0	0	0	0.024397	1	5810	5810		39.253	3.6345	1	25884			84481	9108	58952	59044	93500	93500					0.0218090145710903
VKMLVLLAFII	11	Unmodified	_VKMLVLLAFII_					0	0	0		ENST00000342147.4_1_16:10641279-10641510:-|nuORF	ENST00000342147.4_1_16:10641279-10641510:-|nuORF	ENST00000342147.4_1_16:10641279-10641510:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	630.4143676757812	2	630.41162	1258.80869	0.63796	0.00040218	4.2272	0.0026649	4.8651	0.003067	630.4141158409542	105.94	1.2188	105.94	105.67	106.89	-0.0013123					72	41	3	0	0	0	1.0781	1	13554	13554		17.365	3.2278	1	929820			84482	12505	58953	59045	93501	93501					0.18963575223597218
VKMPKLKMP	9	Unmodified	_VKMPKLKMP_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.7772216796875	2	536.324491	1070.63443	-0.59514	-0.00031919	-1.079	-0.00057868	-1.6741	-0.00089787	536.3237474584639	56.994	0.89581	56.829	56.459	57.355	-0.16431					68	24	4	0	0	0	0.024205	1	6419	6419		53.351	0	1	4533200			84483	2648	58954	59046	93502	93502					0.10193671526599246
VKMVCLREP	9	Unmodified	_VKMVCLREP_					0	0	0		ENST00000462330.5_1_22:19864636-19868612:-|nuORF;ENST00000462843.2_1_22:19864636-19868414:-|nuORF;ENST00000495655.2_1_22:19864636-19868294:-|nuORF;ENST00000485358.5_1_22:19864636-19868612:-|nuORF;ENST00000487165.5_1_22:19864636-19870997:-|nuORF;nc|ENSG00000184470|Q9NNW7-4|TXNRD2;nc|ENSG00000184470|Q9NNW7-3|TXNRD2;ENST00000494454.5_1_22:19864636-19903590:-|nuORF;ENST00000400518.5_2_22:19864636-19919892:-|nuORF;nc|ENSG00000184470|Q9NNW7-2|TXNRD2;ENST00000400525.6_1_22:19864636-19929326:-|nuORF;ENSG00000184470|ENST00000400521|TXNRD2	ENST00000462330.5_1_22:19864636-19868612:-|nuORF	ENST00000462330.5_1_22:19864636-19868612:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7772216796875	2	537.793555	1073.57256	0.17226	9.2639E-05	4.4602	0.0023987	4.6324	0.0024913	537.7944304129151	79.173	0.4574	78.918	78.729	79.187	-0.25471					17	10	2	0	0	0	0.024506	1	9472	9472		30.504	1.3541	1	101800			84484	9341	58955	59047	93503	93503					0.03871320107441534
VKMVCLREP	9	Unmodified	_VKMVCLREP_					0	0	0		ENST00000462330.5_1_22:19864636-19868612:-|nuORF;ENST00000462843.2_1_22:19864636-19868414:-|nuORF;ENST00000495655.2_1_22:19864636-19868294:-|nuORF;ENST00000485358.5_1_22:19864636-19868612:-|nuORF;ENST00000487165.5_1_22:19864636-19870997:-|nuORF;nc|ENSG00000184470|Q9NNW7-4|TXNRD2;nc|ENSG00000184470|Q9NNW7-3|TXNRD2;ENST00000494454.5_1_22:19864636-19903590:-|nuORF;ENST00000400518.5_2_22:19864636-19919892:-|nuORF;nc|ENSG00000184470|Q9NNW7-2|TXNRD2;ENST00000400525.6_1_22:19864636-19929326:-|nuORF;ENSG00000184470|ENST00000400521|TXNRD2	ENST00000462330.5_1_22:19864636-19868612:-|nuORF	ENST00000462330.5_1_22:19864636-19868612:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.793555	1073.57256	-0.11702	-6.2933E-05	2.9202	0.0015705	2.8032	0.0015076	537.7955717877736	79.005	0.21111	78.773	78.65	78.861	-0.23141	-0.072341	-0.00082151	NaN	23.042	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122900			84485	9341	58955	59047							0.03871320107441534
VKMVQNTLSV	10	Unmodified	_VKMVQNTLSV_					0	0	0			REV__ENST00000326047.8_1_3:44815907-44819655:+|nuORF	REV__ENST00000326047.8_1_3:44815907-44819655:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.831787109375	2	559.815541	1117.61653	-0.31163	-0.00017446	0.60442	0.00033836	0.29279	0.00016391	559.8156178382187	79.535	1.0373	79.553	79.192	80.229	0.018669					46	24	3	0	0	0	0.03519	1	9751	9751		49.536	0	1	459900	+		84486	30400	58956	59048	93504	93504					0.06242627805431766
VKNDDKTDHLS	11	Unmodified	_VKNDDKTDHLS_					0	0	0		nc|ENSG00000141522|P52565-2|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.5461730957031	3	424.545724	1270.61534	0.17676	7.5044E-05	0.57784	0.00024532	0.7546	0.00032036	424.54595992791525	18.094	0.59477	17.887	17.664	18.259	-0.20669					21	11	2	0	0	0	0.96481	1	257	257		44.639	0	1	283000			84487	18339	58957	59049	93505	93505					-0.009139150297642118
VKNDDNHIA	9	Unmodified	_VKNDDNHIA_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2689208984375	2	513.254163	1024.49377	0.17407	8.9342E-05	2.3357	0.0011988	2.5097	0.0012881	513.2555239955414	79.663	0.16613	79.444	79.327	79.494	-0.21923					5	3	2	0	0	0	0.024487	1	9544	9544		17.365	0.89182	1	35854	+		84488	20462	58958	59050	93506	93506					-0.01749492601629754
VKNFSFSEN	9	Unmodified	_VKNFSFSEN_					0	0	0			REV__ENST00000254940.9_1_16:69376017-69376176:+|nuORF	REV__ENST00000254940.9_1_16:69376017-69376176:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.30615234375	2	536.258914	1070.50327	-0.88714	-0.00047574	-0.6661	-0.0003572	-1.5532	-0.00083294	536.2589333059628	47.922	0.22989	47.922	47.875	48.105	0					10	6	2	0	0	0	0.024506	1	4849	4849		30.504	0	1	1679200	+		84489	29535	58959	59051	93507	93507					-0.029157243160852886
VKNGLPTDKP	10	Unmodified	_VKNGLPTDKP_					0	0	0		OBSCN-CASZ1|1|fusion;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;CASZ1|p.M554Ifs*6|1|0.69|ENSG00000130940|chr1:10655652-10655653|-/A|frameshift_variant;CASZ1|p.K505Tfs*60|1|0.46|ENSG00000130940|chr1:10655788-10655800|ATCACGTCCTGCT/-|frameshift_variant;ENST00000496432.6_1_1:10713095-10754402:-|nuORF	OBSCN-CASZ1|1|fusion	OBSCN-CASZ1|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.8052368164062	2	534.806031	1067.59751	-1.385	-0.00074073	1.1895	0.00063615	-0.19555	-0.00010458	534.8066463394102	80.531	0.90666	80.379	80.008	80.915	-0.15169					39	21	2	0	0	0	0.72729	1	9996	9996		65.465	5.3471	1	1834600			84490	18899	58960	59052	93508	93508					0.06641414506020737
VKNIIHEEV	9	Unmodified	_VKNIIHEEV_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;ENST00000474368.1_1_21:42773880-42775423:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8163452148438	2	540.806031	1079.59751	-0.52431	-0.00028355	0.046798	2.5309E-05	-0.47751	-0.00025824	540.8059690080196	46.007	0.52336	45.746	45.521	46.044	-0.26118					23	13	2	0	0	0	0.024374	1	4372	4372		40.778	12.896	1	652280			84491	9235	58961	59053	93509	93509					0.060894145060501614
VKNIIHEEV	9	Unmodified	_VKNIIHEEV_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;ENST00000474368.1_1_21:42773880-42775423:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	540.806031	1079.59751	-1.4092	-0.00076209	-0.54599	-0.00029528	-1.9552	-0.0010574	540.8054826655639	45.91	0.83083	45.758	45.446	46.277	-0.15157	0.00026285	-0.00047716	NaN	40.778	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521560			84492	9235	58961	59053							0.060894145060501614
VKNIIHEEV	9	Unmodified	_VKNIIHEEV_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;ENST00000474368.1_1_21:42773880-42775423:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.806031	1079.59751	-0.87047	-0.00047075	0.77966	0.00042165	-0.090809	-4.911E-05	540.8060143460986	45.875	0.61968	45.922	45.684	46.303	0.046429	0.16397	0.00095668	NaN	40.778	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	690070			84493	9235	58961	59053							0.060894145060501614
VKNILHET	8	Unmodified	_VKNILHET_					0	0	0			REV__nc|ENSG00000036257|Q13618-2|CUL3	REV__nc|ENSG00000036257|Q13618-2|CUL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.7584533691406	2	477.274367	952.53418	0.26979	0.00012876	-0.35583	-0.00016983	-0.086044	-4.1066E-05	477.27394819617706	37.204	0.42729	36.995	36.765	37.192	-0.2092					19	10	2	0	0	0	0.027866	1	2949	2949		16.473	0.83134	1	173180	+		84494	20065	58962	59054	93510	93510					0.056014737887949195
VKNILSSTP	9	Unmodified	_VKNILSSTP_					0	0	0			REV__ENST00000341307.6_1_11:63526292-63526517:+|nuORF	REV__ENST00000341307.6_1_11:63526292-63526517:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.8125915527344	2	479.782025	957.549496	0.46348	0.00022237	-0.30273	-0.00014524	0.16075	7.7127E-05	479.7817564089709	57.69	0.53307	57.515	57.19	57.723	-0.1749					39	13	4	0	0	0	0.024541	1	6449	6449		16.473	0	1	5709900	+		84495	30634	58963	59055	93511	93511					0.06902340586009359
VKNITMHLL	9	Unmodified	_VKNITMHLL_					0	0	0		ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	ENSG00000165078|ENST00000297770|CPA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8123779296875	2	534.815344	1067.61614	1.1431	0.00061137	2.0793	0.001112	3.2224	0.0017234	534.8159880668444	18.919	0.3954	18.919	18.674	19.07	0					10	7	2	0	0	0	0.024457	1	363	363		37.159	8.0096	1	24347			84496	7362	58964	59056	93512	93512					0.08503252876244005
VKNKTVKDL	9	Unmodified	_VKNKTVKDL_					0	0	0		ENSG00000253457|ENST00000517349|SMIM18	ENSG00000253457|ENST00000517349|SMIM18	ENSG00000253457|ENST00000517349|SMIM18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.769775390625	2	522.824224	1043.63389	-0.72866	-0.00038096	3.6166	0.0018908	2.8879	0.0015099	522.8260478010432	61.339	0.41303	61.163	60.833	61.246	-0.1761					10	9	2	0	0	0	0.024374	1	6848	6848		40.778	17.736	1	54569			84497	10862	58965	59057	93513	93513					0.11382291402765077
VKNKTVKDL	9	Unmodified	_VKNKTVKDL_					0	0	0		ENSG00000253457|ENST00000517349|SMIM18	ENSG00000253457|ENST00000517349|SMIM18	ENSG00000253457|ENST00000517349|SMIM18	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.824224	1043.63389	-0.31651	-0.00016548	3.4263	0.0017913	3.1098	0.0016259	522.8264858697462	61.539	0.37237	61.282	61.091	61.464	-0.25725	0.059222	-0.00010986	NaN	25.574	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55307			84498	10862	58965	59057							0.11382291402765077
VKNLQQIYL	9	Unmodified	_VKNLQQIYL_					0	0	0			REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.8152465820312	2	559.832049	1117.64954	-0.49408	-0.0002766	2.2962	0.0012855	1.8022	0.0010089	559.8334614678533	81.424	1.22	81.424	81.017	82.237	0					49	29	3	0	0	0	0.021616	1	10187	10187		73.975	23.95	1	265110	+		84499	22094	58966	59058	93514	93514					0.09542577919773976
VKNLVKIF	8	Unmodified	_VKNLVKIF_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4;ABCA4|p.E939Q|1|0.05|ENSG00000198691|chr1:94047022-94047022|C/G|missense_variant	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	480.8155822753906	2	480.81567	959.616788	-0.063836	-3.0693E-05	-0.3027	-0.00014554	-0.36654	-0.00017624	480.8153904982512	53.781	1.6371	53.583	53.312	54.949	-0.19739					94	46	4	0	0	0	0.28298	1	5656	5656		119.22	0	1	6932800			84500	10172	58967	59059	93515	93515					0.1353641558760046
VKNNQLIK	8	Unmodified	_VKNNQLIK_					0	0	0		nc|ENSG00000196236|Q9NQH7-2|XPNPEP3;nc|ENSG00000196236|Q9NQH7-4|XPNPEP3;ENSG00000196236|ENST00000357137|XPNPEP3	nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.8125915527344	2	478.798009	955.581465	0.72264	0.000346	-0.42769	-0.00020478	0.29495	0.00014122	478.7976935411697	57.45	0.59913	57.275	56.898	57.497	-0.1749					38	15	4	0	0	0	0.027866	1	6449	6449		12.959	0	1	817000			84501	9843	58968	59060	93516	93516					0.10189753059796658
VKNQFGPNL	9	Unmodified	_VKNQFGPNL_					0	0	0			REV__ENST00000602009.5_1_19:16512885-16513104:-|nuORF	REV__ENST00000602009.5_1_19:16512885-16513104:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7493896484375	2	508.779816	1015.54508	-0.66288	-0.00033726	2.6871	0.0013672	2.0243	0.0010299	508.7813509752818	29.772	0.9646	29.781	29.282	30.247	0.0086689					30	23	2	0	0	0	0.024263	1	1901	1901		34.173	5.023	1	60451	+		84502	35867	58969	59061	93517	93517					0.03792876163083747
VKNQFGPNL	9	Unmodified	_VKNQFGPNL_					0	0	0			REV__ENST00000602009.5_1_19:16512885-16513104:-|nuORF	REV__ENST00000602009.5_1_19:16512885-16513104:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	508.779816	1015.54508	-0.41548	-0.00021139	8.3005	0.0042231	7.885	0.0040117	508.78430175918726	29.992	0.20762	29.748	29.612	29.82	-0.24415	0.055862	0.0044759	NaN	34.173	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48511	+		84503	35867	58969	59061							0.03792876163083747
VKNRLLVK	8	Unmodified	_VKNRLLVK_					0	0	0		ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENSG00000184863|ENST00000401878|RBM33	ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.313232421875	2	485.332019	968.649485	-1.2073	-0.00058596	-1.1449	-0.00055566	-2.3522	-0.0011416	485.33072300828127	44.324	0.23645	44.179	43.958	44.194	-0.14471					10	6	2	0	0	0	0.027866	1	4201	4201		47.916	0	1	310390			84504	9375	58970	59062	93518	93518					0.1639062271046896
VKNRLLVK	8	Unmodified	_VKNRLLVK_					0	0	0		ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENSG00000184863|ENST00000401878|RBM33	ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.313232421875	2	485.332019	968.649485	-1.273	-0.0006178	2.286	0.0011095	1.0131	0.00049169	485.332672134665	44.354	0.12998	44.209	44.162	44.292	-0.14471					6	3	2	0	0	0	0.027866	1	4201	4201		47.916	0	1	158000			84505	9375	58970	59062	93519	93519					0.1639062271046896
VKNRLLVK	8	Unmodified	_VKNRLLVK_					0	0	0		ENSG00000184863|ENST00000401878|RBM33;ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENSG00000184863|ENST00000401878|RBM33	ENSG00000184863|ENST00000401878|RBM33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3134460449219	2	485.332019	968.649485	-0.73673	-0.00035756	-0.265	-0.00012861	-1.0017	-0.00048617	485.331364276798	44.155	0.2745	44.192	43.998	44.273	0.0369					11	7	2	0	0	0	0.027866	1	4127	4127		40.573	0	1	154600			84506	9375	58970	59062	93520	93520					0.1639062271046896
VKNVGILMGPL	11	Unmodified	_VKNVGILMGPL_					0	0	0		SLC36A2|p.A82V|1|0.2|ENSG00000186335|chr5:151344187-151344187|G/A|missense_variant	SLC36A2|p.A82V|1|0.2|ENSG00000186335|chr5:151344187-151344187|G/A|missense_variant	SLC36A2|p.A82V|1|0.2|ENSG00000186335|chr5:151344187-151344187|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	570.7899780273438	2	570.844102	1139.67365	-0.87383	-0.00049882	-1.1464	-0.00065444	-2.0203	-0.0011533	571.3452000767761	78.062	0.36954	78.062	77.792	78.162	0					11	8	2	0	0	0	0.024738	1	9644	9644		34.173	8.5985	1	87431			84507	37888	58971	59063	93521	93521					0.10940095081855361
VKNVPMLI	8	Unmodified	_VKNVPMLI_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	457.2354431152344	2	457.280606	912.546659	0.034446	1.5752E-05	2.3765	0.0010867	2.411	0.0011025	457.2813399860767	22.339	0.29124	22.137	21.903	22.194	-0.20198					8	5	2	0	0	0	0.027866	1	755	755		28.254	0	1	14262	+		84508	25648	58972	59064	93522	93522					0.08688793927501592
VKNVSGIGQI	10	Unmodified	_VKNVSGIGQI_					0	0	0		nc|ENSG00000168826|Q6ZSB9-4|ZBTB49;nc|ENSG00000168826|Q6ZSB9-3|ZBTB49;nc|ENSG00000168826|Q6ZSB9-5|ZBTB49;nc|ENSG00000168826|Q6ZSB9-2|ZBTB49;ENSG00000168826|ENST00000337872|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3316345214844	2	507.800749	1013.58694	-0.095336	-4.8412E-05	-0.90752	-0.00046084	-1.0029	-0.00050925	507.7999688483924	41.964	0.48734	41.99	41.601	42.088	0.026012					15	13	2	0	0	0	0.03519	1	3698	3698		58.23	0	1	147070			84509	7871	58973	59065	93523	93523					0.0806943185162936
VKNVYEESL	9	Unmodified	_VKNVYEESL_					0	0	0		ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.7805786132812	2	540.782222	1079.54989	-1.324	-0.00071598	-1.9246	-0.0010408	-3.2486	-0.0017568	540.7810206603442	28.347	0.87072	28.102	27.882	28.753	-0.24524					47	20	3	0	0	0	0.25032	1	1656	1656		82.305	5.5309	1	1470200			84510	4669	58974	59066	93524	93524					0.013297155152031337
VKNVYEESL	9	Unmodified	_VKNVYEESL_					0	0	0		ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	540.7803955078125	2	540.782222	1079.54989	-1.342	-0.00072574	-1.7409	-0.00094147	-3.083	-0.0016672	540.781171006324	28.291	0.85553	28.139	27.885	28.74	-0.15195					44	20	3	0	0	0	0.25032	1	1619	1619		82.305	5.5309	1	1741000			84511	4669	58974	59066	93525	93525					0.013297155152031337
VKNWQDIDLI	10	Unmodified	_VKNWQDIDLI_					0	0	0			REV__ENST00000469110.1_1_10:49633920-49634247:+|nuORF	REV__ENST00000469110.1_1_10:49633920-49634247:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2120666503906	3	415.227556	1242.66084	-0.13922	-5.781E-05	0.55494	0.00023042	0.41571	0.00017262	415.2278544549027	28.184	0.87617	28.265	27.95	28.826	0.080811					26	20	2	0	0	0	0.03519	1	1530	1530		20.03	3.5006	1	159100	+		84512	33124	58975	59067	93526	93526					0.04921355223291357
VKNYHINN	8	Unmodified	_VKNYHINN_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;GPI-EYS|2|fusion;GPI-EYS|1|fusion	ENSG00000188107|ENST00000503581|EYS;GPI-EYS|2|fusion	GPI-EYS|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.2776184082031	2	501.261791	1000.50903	-0.17779	-8.9117E-05	1.8743	0.00093951	1.6965	0.0008504	501.2628166402388	61.277	0.4432	61.055	60.787	61.23	-0.22134					23	11	3	0	0	0	0.027866	1	7060	7060		31.955	1.4512	1	289310			84513	17687;9692	58976	59068	93527	93527					0.008794189862214807
VKNYYCPD	8	Unmodified	_VKNYYCPD_					0	0	0			REV__nc|ENSG00000147130|Q14202-2|ZMYM3	REV__nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.778076171875	2	501.223485	1000.43242	1.6884	0.00084625	1.3845	0.00069394	3.0729	0.0015402	501.22420657422646	63.877	0.28973	63.877	63.736	64.026	0					10	7	2	0	0	0	0.027866	1	7493	7493		12.959	4.7279	1	142040	+		84514	36761	58977	59069	93528	93528					-0.06778140625272044
VKPALAPAV	9	Unmodified	_VKPALAPAV_					0	0	0			REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2428283691406	2	433.278921	864.543289	0.13702	5.9369E-05	-0.20872	-9.0434E-05	-0.071697	-3.1065E-05	433.27874144738206	46.935	0.53893	46.782	46.55	47.089	-0.15301					23	13	2	0	0	0	0.024325	1	4672	4672		40.573	22.248	1	348060	+		84515	22816	58978	59070	93529	93529					0.10559867145127555
VKPALAPAV	9	Unmodified	_VKPALAPAV_					0	0	0			REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	433.278921	864.543289	0.26546	0.00011502	-0.40291	-0.00017457	-0.13744	-5.9552E-05	433.2786219088238	46.857	0.48905	46.857	46.587	47.076	0	0.02731	-0.00016461	NaN	38.806	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351720	+		84516	22816	58978	59070							0.10559867145127555
VKPAPSKQA	9	Unmodified	_VKPAPSKQA_					0	0	0			REV__nc|nan|Q6ZRI6-3|C15orf39	REV__nc|nan|Q6ZRI6-3|C15orf39	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	463.2768859863281	2	463.276909	924.539266	-0.051122	-2.3684E-05	-0.88144	-0.00040835	-0.93256	-0.00043203	463.2763255673225	37.739	0.8216	37.771	37.413	38.235	0.032269					62	22	4	0	0	0	0.67687	1	3038	3038		47.657	3.5405	1	3895800	+		84517	26115	58979	59071	93530	93530					0.07397777651419801
VKPARRVNL	9	Unmodified	_VKPARRVNL_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.3147583007812	2	526.838	1051.66145	-0.35812	-0.00018867	2.582	0.0013603	2.2239	0.0011716	526.8385095484349	75.176	0.29594	74.912	74.774	75.07	-0.26326					9	6	2	0	0	0	0.024541	1	8876	8876		10.265	0	1	43911			84518	5106	58980	59072	93531	93531					0.1376823945365686
VKPDEVGAW	9	Unmodified	_VKPDEVGAW_					0	0	0			REV__ENSG00000136718|ENST00000259239|IMP4	REV__ENSG00000136718|ENST00000259239|IMP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.75830078125	2	500.758549	999.502546	-0.06234	-3.1217E-05	-0.90429	-0.00045283	-0.96663	-0.00048405	500.758514269829	70.047	0.90707	69.796	69.236	70.143	-0.25063					67	21	5	0	0	0	0.33245	1	8152	8152		71.296	0	1	1907500	+		84519	23676	58981	59073	93532	93532					0.00277481034856919
VKPGKLNLDV	10	Unmodified	_VKPGKLNLDV_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2803344726562	2	541.832049	1081.64954	-2.0625	-0.0011175	0.17059	9.2434E-05	-1.8919	-0.0010251	542.3332981128499	52.239	0.29346	51.97	51.869	52.162	-0.26903					10	7	2	0	0	0	0.03519	1	5412	5412		29.17	18.305	1	62434	+		84520	22797	58982	59074	93533	93533					0.11198577919776653
VKPGKLNLNID	11	Unmodified	_VKPGKLNLNID_					0	0	0			REV__AHNAK|p.D4727N|1|0.08|ENSG00000124942|chr11:62520238-62520238|C/T|missense_variant	REV__AHNAK|p.D4727N|1|0.08|ENSG00000124942|chr11:62520238-62520238|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.2273254394531	3	404.243317	1209.70812	0.46267	0.00018703	-2.548	-0.00103	-2.0853	-0.00084297	404.5765439146534	25.238	0.77814	25.238	24.874	25.652	0					32	18	4	0	0	0	0.024779	1	1128	1128		27.644	18.845	1	327670	+		84521	19091	58983	59075	93534	93534					0.11165634494250298
VKPGKLNLNID	11	Unmodified	_VKPGKLNLNID_					0	0	0			REV__AHNAK|p.D4727N|1|0.08|ENSG00000124942|chr11:62520238-62520238|C/T|missense_variant	REV__AHNAK|p.D4727N|1|0.08|ENSG00000124942|chr11:62520238-62520238|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	404.243317	1209.70812	2.2631	0.00091485	-4.2088	-0.0017014	-1.9457	-0.00078655	404.24147586113816	25.114	0.70667	25.195	24.916	25.622	0.08009	-0.021748	-0.00094457	NaN	25.892	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324370	+		84522	19091	58983	59075							0.11165634494250298
VKPIEEDEP	9	Unmodified	_VKPIEEDEP_					0	0	0			REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	REV__XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2388916015625	2	528.266404	1054.51826	1.3122	0.00069321	-0.75796	-0.0004004	0.55428	0.00029281	528.265683457117	63.23	0.10408	63.284	63.198	63.302	0.054104					4	2	2	0	0	0	0.024541	1	7301	7301		17.365	0.89182	1	52287	+		84523	25531	58984	59076	93535	93535					-0.006822772387522491
VKPITLKAR	9	Unmodified	_VKPITLKAR_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.310791015625	2	513.345126	1024.6757	-1.1955	-0.00061368	-1.8094	-0.00092883	-3.0048	-0.0015425	513.3442768474399	65.294	0.15424	65.021	64.901	65.055	-0.27282					5	3	2	0	0	0	0.024319	1	7692	7692		56.721	9.0637	1	31762			84524	1582	58985	59077	93536	93536					0.16434891881908698
VKPITLKAR	9	Unmodified	_VKPITLKAR_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3106689453125	2	513.345126	1024.6757	-0.82823	-0.00042517	-2.4817	-0.001274	-3.31	-0.0016991	513.3444656630121	64.99	0.19046	65.027	64.854	65.045	0.037384					6	4	2	0	0	0	0.024374	1	7567	7567		40.778	0	1	140380			84525	1582	58985	59077	93537	93537					0.16434891881908698
VKPKAGPQ	8	Unmodified	_VKPKAGPQ_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2073974609375	2	412.75307	823.491587	0.38777	0.00016005	0.45506	0.00018783	0.84283	0.00034788	412.7530176581848	22.4	0.45901	22.211	22.007	22.466	-0.18894					21	9	4	0	0	0	0.027866	1	782	782		17.365	4.4058	1	230670	+		84526	20707	58986	59078	93538	93538					0.07278123451237661
VKPKAGPQ	8	Unmodified	_VKPKAGPQ_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	412.75307	823.491587	0.55759	0.00023015	-0.00017208	-7.1026E-08	0.55742	0.00023008	412.752852261802	22.54	0.69641	22.338	22.097	22.793	-0.20198	0.063378	-0.0002517	NaN	17.365	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332050	+		84527	20707	58986	59078							0.07278123451237661
VKPKDTEII	9	Unmodified	_VKPKDTEII_					0	0	0			REV__nc|ENSG00000095139|P48444-2|ARCN1	REV__nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8121948242188	2	521.810782	1041.60701	-0.13268	-6.9233E-05	3.9032	0.0020368	3.7706	0.0019675	521.8128118762803	41.489	1.2789	41.512	41.111	42.39	0.023006					85	36	4	0	0	0	0.92825	1	3688	3688		30.504	2.6214	1	16691000	+		84528	20959	58987	59079	93539	93539					0.0878718279154782
VKPKEEPSST	10	Unmodified	_VKPKEEPSST_					0	0	0			REV__nc|ENSG00000172548|Q0D2K0-2|NIPAL4	REV__nc|ENSG00000172548|Q0D2K0-2|NIPAL4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.322021484375	2	551.292953	1100.57135	-0.072157	-3.978E-05	0.77811	0.00042897	0.70596	0.00038919	551.2932445549246	46.701	0.71537	46.605	46.368	47.083	-0.096649					42	19	3	0	0	0	0.03519	1	4580	4580		30.318	0	1	1497400	+		84529	19445	58988	59080	93540	93540					0.025091005438980574
VKPKMKRVKRF	11	Unmodified	_VKPKMKRVKRF_					0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.9710388183594	3	472.970986	1415.89113	-0.21442	-0.00010141	0.20081	9.4979E-05	-0.013603	-6.4339E-06	472.9710650802329	49.088	1.4052	48.987	48.726	50.131	-0.1008					127	36	6	0	0	0	1.0739	2	4902	4902;4949		18.531	5.5736	1	6827200			84530	14035	58989	59081	93541;93542	93541					0.19981910075080123
VKPKMKRVKRF	11	Unmodified	_VKPKMKRVKRF_					0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.97149658203125	3	472.970986	1415.89113	0.041171	1.9473E-05	0.014921	7.0571E-06	0.056092	2.653E-05	472.9709299389086	49.368	1.396	49.088	48.825	50.221	-0.27977					123	36	5	0	0	0	1.0764	2	4933	4933;4966		17.833	3.7471	1	7255500			84531	14035	58989	59081	93543;93544	93543					0.19981910075080123
VKPKMKRVKRF	11	Unmodified	_VKPKMKRVKRF_					0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.9711608886719	3	472.970986	1415.89113	-0.11653	-5.5115E-05	0.24787	0.00011724	0.13134	6.2122E-05	472.9710320575272	49.257	1.3974	49.075	48.773	50.17	-0.18206					114	36	5	0	0	0	1.09	2	4917	4917;4941		14.086	0.57807	1	6253400			84532	14035	58989	59081	93545;93546	93545					0.19981910075080123
VKPKRRKK	8	Unmodified	_VKPKRRKK_					0	0	0		nc|ENSG00000164125|Q6UWH4-2|GASK1B;ENSG00000164125|ENST00000585682|GASK1B;nc|ENSG00000164125|Q6UWH4-3|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	nc|ENSG00000164125|Q6UWH4-2|GASK1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.8203125	2	520.364185	1038.71382	-1.1699	-0.00060877	-3.6377	-0.0018929	-4.8076	-0.0025017	520.3627515836683	80.677	0.20248	80.701	80.573	80.775	0.023903					5	4	2	0	0	0	0.027866	1	9940	9940		8.8223	0	1	143050			84533	7221	58990	59082	93547	93547					0.1960082258726743
VKPLGIKLS	9	Unmodified	_VKPLGIKLS_					0	0	0		ENST00000470506.1_1_2:58390162-58390210:-|nuORF;ENSG00000115392|ENST00000233741|FANCL;nc|ENSG00000115392|Q9NW38-2|FANCL	ENST00000470506.1_1_2:58390162-58390210:-|nuORF	ENST00000470506.1_1_2:58390162-58390210:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77752685546875	2	477.820953	953.627353	-0.088718	-4.2392E-05	2.797	0.0013365	2.7083	0.0012941	477.82242908538154	27.347	0.36821	27.334	27.277	27.645	-0.012983					19	9	3	0	0	0	0.023007	1	1501	1501		56.721	0	1	189870			84534	3441	58991	59083	93548	93548					0.14868398242026615
VKPMIGLL	8	Unmodified	_VKPMIGLL_					0	0	0			REV__ENST00000320339.8_1_X:118699189-118699333:-|nuORF	REV__ENST00000320339.8_1_X:118699189-118699333:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.7433166503906	2	435.777699	869.540846	-0.15408	-6.7144E-05	2.6408	0.0011508	2.4867	0.0010836	435.7787895439718	33.578	0.881	33.578	33.287	34.168	0					37	23	2	0	0	0	0.027866	1	2391	2391		20.482	0	1	508790	+		84535	30332	58992	59084	93549	93549					0.10085695415830287
VKPMIRVE	8	Unmodified	_VKPMIRVE_					0	0	0		nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-1|AFDN	nc|ENSG00000130396|P55196-1|AFDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2776794433594	2	486.288963	970.563372	-0.77287	-0.00037584	0.01161	5.646E-06	-0.76126	-0.00037019	486.28891689409204	40.453	0.53193	40.222	39.811	40.343	-0.23021					34	13	4	0	0	0	0.027866	1	3498	3498		30.504	0	1	251070			84536	18266	58993	59085	93550	93550					0.07691294813457716
VKPPIPAL	8	Unmodified	_VKPPIPAL_					0	0	0			REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.73284912109375	2	417.776014	833.537475	0.20838	8.7057E-05	-0.63379	-0.00026478	-0.42541	-0.00017773	417.7756343648633	39.178	0.73529	38.953	38.736	39.472	-0.2257					27	19	2	0	0	0	0.027866	1	3349	3349		8.2313	4.2461	1	441560	+		84537	19843	58994	59086	93551	93551					0.11404768633451567
VKPQPLPIP	9	Unmodified	_VKPQPLPIP_					0	0	0		ENST00000465409.1_1_10:104183641-104183911:-|nuORF	ENST00000465409.1_1_10:104183641-104183911:-|nuORF	ENST00000465409.1_1_10:104183641-104183911:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.25042724609375	2	494.813128	987.611703	-0.34634	-0.00017137	-0.23564	-0.0001166	-0.58197	-0.00028797	494.81287265138246	44.964	0.96631	44.964	44.247	45.214	0					63	27	3	0	0	0	0.024323	1	4324	4324		44.117	14.967	1	443290			84538	14782	58995	59087	93552	93552					0.11740111724986946
VKPQPLPIP	9	Unmodified	_VKPQPLPIP_					0	0	0		ENST00000465409.1_1_10:104183641-104183911:-|nuORF	ENST00000465409.1_1_10:104183641-104183911:-|nuORF	ENST00000465409.1_1_10:104183641-104183911:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.25018310546875	2	494.813128	987.611703	-0.2028	-0.00010035	-0.3306	-0.00016358	-0.5334	-0.00026393	494.8127896175497	44.943	1.2295	44.987	44.248	45.478	0.043877					69	35	3	0	0	0	0.024412	1	4261	4261		40.573	6.4001	1	557560			84539	14782	58995	59087	93553	93553					0.11740111724986946
VKPRTEGKI	9	Unmodified	_VKPRTEGKI_					0	0	0		nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENSG00000167393|ENST00000390665|PPP2R3B;ENST00000477110.6_1_X:299337-302121:-|nuORF;ENST00000468169.6_1_X:299440-306311:-|nuORF	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8002319335938	2	514.316566	1026.61858	-0.34243	-0.00017612	0.26329	0.00013542	-0.079135	-4.0701E-05	514.3167044560358	31.633	0.56201	31.645	31.34	31.902	0.011797					20	13	2	0	0	0	0.024495	1	2092	2092		34.173	7.4796	1	73991			84540	7683	58996	59088	93554	93554					0.10633424605566688
VKPSPLPVSVQ	11	Unmodified	_VKPSPLPVSVQ_					0	0	0			REV__ENSG00000095203|ENST00000374566|EPB41L4B	REV__ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8428344726562	2	575.845156	1149.67576	-0.59889	-0.00034487	-3.2038	-0.0018449	-3.8027	-0.0021898	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.95664	1	10822	10822		46.457	8.6453	1	2151700	+		84541	20960	58997	59089	93555	93555					0.10690847091291289
VKPSTFYAPTK	11	Unmodified	_VKPSTFYAPTK_					0	0	0			REV__ENSG00000002587|ENST00000002596|HS3ST1	REV__ENSG00000002587|ENST00000002596|HS3ST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.26922607421875	3	413.564168	1237.67067	-0.01804	-7.4608E-06	2.1206	0.000877	2.1026	0.00086954	413.5646070156698	27.912	1.8334	27.907	27.214	29.047	-0.0042019					84	45	3	0	0	0	0.024778	1	1627	1627		32.034	0	1	527120	+		84542	19764	58998	59090	93556	93556					0.061345432286543655
VKPVTISR	8	Unmodified	_VKPVTISR_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.20648193359375	2	450.287277	898.560001	0.59027	0.00026579	-1.7733	-0.0007985	-1.183	-0.00053271	450.2864151248329	22.479	0.41227	22.29	22.147	22.559	-0.18894					11	8	2	0	0	0	0.027866	1	839	839		30.504	3.7075	1	33492			84543	9219	58999	59091	93557	93557					0.10666368031093043
VKQAMCLY	8	Unmodified	_VKQAMCLY_					0	0	0		ENST00000489318.1_1_9:97523006-97535511:+|nuORF	ENST00000489318.1_1_9:97523006-97535511:+|nuORF	ENST00000489318.1_1_9:97523006-97535511:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.3237609863281	2	478.240624	954.466695	0.19615	9.3806E-05	4.2407	0.0020281	4.4368	0.0021219	478.2423991821072	24.531	0.63009	24.316	24.134	24.764	-0.2151					22	14	2	0	0	0	0.027866	1	1124	1124		26.796	0	1	162500			84544	15403	59000	59092	93558	93558					-0.012360157380044257
VKQAMKAIL	9	Unmodified	_VKQAMKAIL_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7807922363281	2	501.312438	1000.61032	-0.66028	-0.00033101	0.12203	6.1174E-05	-0.53825	-0.00026983	501.31233063663217	45.3	0.61854	45.151	44.83	45.449	-0.1488					44	17	3	0	0	0	0.023596	1	4396	4396		73.975	0	1	1835500			84545	3849	59001	59093	93559	93559					0.11004154364582064
VKQASQKQP	9	Unmodified	_VKQASQKQP_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.841796875	2	507.290548	1012.56654	-0.15658	-7.9429E-05	3.731	0.0018927	3.5744	0.0018133	507.29238519911365	66.032	0.4925	66.062	65.774	66.267	0.030106					28	12	3	0	0	0	0.024381	1	7723	7723		37.159	0	1	3477900	+		84546	26870;28236	59002	59094	93560	93560					0.06076261191810772
VKQASQKQP	9	Unmodified	_VKQASQKQP_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.290548	1012.56654	-0.19064	-9.6712E-05	3.8656	0.001961	3.6749	0.0018642	507.2923365074488	66.221	0.66277	65.979	65.748	66.41	-0.24145	-0.015311	3.8487E-05	NaN	37.159	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	593990	+		84547	26870;28236	59002	59094							0.06076261191810772
VKQASQKQP	9	Unmodified	_VKQASQKQP_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.290548	1012.56654	-0.75992	-0.0003855	4.3067	0.0021847	3.5467	0.0017992	507.29269511979976	66.2	0.63089	65.987	65.712	66.343	-0.21327	-0.0074875	0.00048602	NaN	37.159	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579350	+		84548	26870;28236	59002	59094							0.06076261191810772
VKQASQKQP	9	Unmodified	_VKQASQKQP_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	REV__nc|ENSG00000174501|Q5JPF3|ANKRD36C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.290548	1012.56654	-0.58208	-0.00029528	4.0937	0.0020767	3.5116	0.0017814	507.29250668122523	66.209	0.50827	65.964	65.732	66.24	-0.24517	-0.030686	0.00026997	NaN	37.159	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571580	+		84549	26870;28236	59002	59094							0.06076261191810772
VKQDKTEV	8	Unmodified	_VKQDKTEV_					0	0	0			REV__nc|ENSG00000078814|A7E2Y1|MYH7B	REV__nc|ENSG00000078814|A7E2Y1|MYH7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7637023925781	2	473.763832	945.513111	0.52302	0.00024779	-0.79548	-0.00037687	-0.27246	-0.00012908	473.7634056593197	23.146	1.0645	22.944	22.593	23.657	-0.20193					46	23	4	0	0	0	0.53593	1	892	892		82.241	0	1	1696200	+		84550	20622	59003	59095	93561	93561					0.03817463689279066
VKQEEPVQIKR	11	Unmodified	_VKQEEPVQIKR_					0	0	0			REV__ENST00000594723.1_1_19:49136676-49136928:-|nuORF	REV__ENST00000594723.1_1_19:49136676-49136928:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9328918457031	3	451.933143	1352.7776	1.0325	0.00046661	-2.0942	-0.00094645	-1.0617	-0.00047983	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0371	1	12231	12231		28.577	1.827	1	1299700	+		84551	35777	59004	59096	93562	93562					0.11532093442997393
VKQGLIQRY	9	Unmodified	_VKQGLIQRY_					0	0	0			REV__nc|ENSG00000226660|A0A1B0GX68|TRBV2	REV__nc|ENSG00000226660|A0A1B0GX68|TRBV2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.81103515625	2	552.82984	1103.64513	-0.96681	-0.00053448	-0.55909	-0.00030908	-1.5259	-0.00084356	552.8293110463387	51.734	1.1224	51.587	50.935	52.057	-0.14735					62	31	4	0	0	0	0.024436	1	5462	5462		23.042	5.6775	1	1358300	+		84552	37141	59005	59097	93563	93563					0.09745113496887825
VKQHHTKA	8	Unmodified	_VKQHHTKA_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7856140136719	2	474.772326	947.530098	0.27069	0.00012852	-1.3357	-0.00063418	-1.0651	-0.00050566	474.77152223639484	33.656	0.87483	33.712	33.423	34.298	0.056572					36	21	2	0	0	0	0.027866	1	2477	2477		29.15	0	1	1274300	+		84553	22849	59006	59098	93564	93564					0.054234290857380074
VKQHIPLRNL	10	Unmodified	_VKQHIPLRNL_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	406.2109680175781	3	406.587418	1216.74043	-0.041041	-1.6687E-05	-0.22869	-9.2984E-05	-0.26974	-0.00010967	406.58723321730673	27.292	1.2815	27.124	26.809	28.09	-0.16816					41	30	2	0	0	0	0.03519	1	1494	1494		15.333	0	1	66666			84554	8805	59007	59099	93565	93565					0.14072466687935048
VKQIERIW	8	Unmodified	_VKQIERIW_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3421630859375	2	536.319109	1070.62366	-0.79971	-0.0004289	-0.69356	-0.00037197	-1.4933	-0.00080087	536.3187250802754	27.108	0.16272	26.94	26.809	26.971	-0.16816					5	3	2	0	0	0	0.027866	1	1455	1455		16.473	0	1	26468	+		84555	28263;19723	59008	59100	93566	93566					0.09117728468186215
VKQLEDWY	8	Unmodified	_VKQLEDWY_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.3084106445312	2	540.771657	1079.52876	-0.55667	-0.00030103	-1.5538	-0.00084027	-2.1105	-0.0011413	540.7705784243252	42.966	0.35986	42.827	42.631	42.991	-0.13929					12	9	2	0	0	0	0.027866	1	3977	3977		42.474	8.9589	1	235010	+		84556	23290	59009	59101	93567	93567					-0.007822497936786021
VKQLEDWY	8	Unmodified	_VKQLEDWY_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.771657	1079.52876	-1.3305	-0.00071951	-4.9566	-0.0026804	-6.2871	-0.0033999	540.7690791173216	42.692	0.26202	42.466	42.374	42.636	-0.22597	-0.18058	-0.0020453	NaN	33.516	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73499	+		84557	23290	59009	59101							-0.007822497936786021
VKQLGRTLS	9	Unmodified	_VKQLGRTLS_					0	0	0			REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.30908203125	2	501.308741	1000.60293	0.36331	0.00018213	-0.93362	-0.00046803	-0.5703	-0.0002859	501.3081616442008	21.41	0.72216	21.233	20.918	21.64	-0.17721					33	14	3	0	0	0	0.50848	1	685	685		58.782	5.4305	1	715790	+		84558	26830	59010	59102	93568	93568					0.10265138088516323
VKQLLESH	8	Unmodified	_VKQLLESH_					0	0	0			REV__ENSG00000147586|ENST00000276585|MRPS28	REV__ENSG00000147586|ENST00000276585|MRPS28	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2673645019531	2	477.274367	952.53418	0.2215	0.00010572	-0.61768	-0.0002948	-0.39618	-0.00018908	477.27391930183853	49.487	0.80152	49.336	48.794	49.596	-0.1512					32	21	2	0	0	0	0.027866	1	5069	5069		29.15	4.9468	1	565810	+		84559	24567	59011	59103	93569	93569					0.05601473788806288
VKQLLESH	8	Unmodified	_VKQLLESH_					0	0	0			REV__ENSG00000147586|ENST00000276585|MRPS28	REV__ENSG00000147586|ENST00000276585|MRPS28	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	477.274367	952.53418	1.2022	0.00057377	-1.4557	-0.00069478	-0.25355	-0.00012101	477.2735333454119	49.267	0.68316	49.267	48.899	49.582	0	-0.020696	-0.0010936	NaN	29.15	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662350	+		84560	24567	59011	59103							0.05601473788806288
VKQLNDGHSE	10	Unmodified	_VKQLNDGHSE_					0	0	0			REV__ENST00000560002.5_1_15:56999309-56999485:-|nuORF	REV__ENST00000560002.5_1_15:56999309-56999485:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8403930664062	2	563.778002	1125.54145	-1.0757	-0.00060647	-0.75698	-0.00042677	-1.8327	-0.0010332	563.7770313665203	58.311	0.58216	58.134	57.966	58.548	-0.1767					28	15	3	0	0	0	0.03519	1	6560	6560		43.651	0	1	670680	+		84561	35131	59012	59104	93570	93570					-0.016298384014362455
VKQLRGHPK	9	Unmodified	_VKQLRGHPK_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion;REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7849731445312	2	531.830175	1061.6458	-0.48822	-0.00025965	1.777	0.00094505	1.2888	0.0006854	531.8309015502754	46.404	0.54452	46.404	46.308	46.852	0					33	14	3	0	0	0	0.024487	1	4642	4642		17.365	0	1	1197600	+		84562	26810;37445;35108	59013	59105	93571	93571					0.11743952936603819
VKQLVMRF	8	Unmodified	_VKQLVMRF_					0	0	0			REV__ENSG00000115155|ENST00000272371|OTOF	REV__ENSG00000115155|ENST00000272371|OTOF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7896423339844	2	510.80478	1019.59501	0.8121	0.00041483	-3.2254	-0.0016475	-2.4133	-0.0012327	510.8031878926634	82.257	0.37337	82.147	81.921	82.294	-0.11006					15	8	3	0	0	0	0.027866	1	10251	10251		33.516	6.7195	1	218370	+		84563	22169	59014	59106	93572	93572					0.08599287567392366
VKQLVMRF	8	Unmodified	_VKQLVMRF_					0	0	0			REV__ENSG00000115155|ENST00000272371|OTOF	REV__ENSG00000115155|ENST00000272371|OTOF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.78948974609375	2	510.80478	1019.59501	-0.031438	-1.6059E-05	-1.4763	-0.0007541	-1.5077	-0.00077016	510.80403028952367	82.247	0.43311	82.066	81.941	82.374	-0.18079					12	9	2	0	0	0	0.027866	1	9897	9897		44.531	36.841	1	32053	+		84564	22169	59014	59106	93573	93573					0.08599287567392366
VKQMLESSMLV	11	Unmodified	_VKQMLESSMLV_					0	0	0		SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.7820129394531	3	422.22617	1263.65668	2.4028	0.0010145	-1.5272	-0.00064483	0.87553	0.00036967	422.2254267245606	24.55	0.56214	24.369	24.072	24.634	-0.18089					25	12	4	0	0	0	0.024734	1	1068	1068		27.644	0	1	122710			84565	38041	59015	59107	93574	93574					0.035398064136870744
VKQMLESSMLV	11	Unmodified	_VKQMLESSMLV_					0	0	0		SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	422.22617	1263.65668	-0.15091	-6.3718E-05	0.46972	0.00019833	0.31881	0.00013461	422.2265293133912	24.746	0.64108	24.531	24.257	24.898	-0.2151	0.12366	0.00055539	NaN	27.644	29	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183190			84566	38041	59015	59107							0.035398064136870744
VKQMLESSMLV	11	Unmodified	_VKQMLESSMLV_					0	0	0		SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	422.22617	1263.65668	-0.021169	-8.9381E-06	1.1275	0.00047605	1.1063	0.00046711	422.22658789278125	24.497	0.42139	24.322	24.089	24.511	-0.17484	-0.085421	0.0013886	NaN	27.644	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144720			84567	38041	59015	59107							0.035398064136870744
VKQPAPSK	8	Unmodified	_VKQPAPSK_					0	0	0			REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.21673583984375	2	427.758352	853.502152	-0.46041	-0.00019694	0.32388	0.00013854	-0.13653	-5.84E-05	427.7583562907155	30.281	0.66836	30.103	29.655	30.323	-0.17818					23	15	2	0	0	0	0.027866	1	1861	1861		23.042	0	1	258410	+		84568	34563	59016	59108	93575	93575					0.0695410610566114
VKQPAPSK	8	Unmodified	_VKQPAPSK_					0	0	0			REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	427.758352	853.502152	-0.063386	-2.7114E-05	0.20139	8.6148E-05	0.13801	5.9034E-05	427.758362373255	30.361	0.84536	30.117	29.862	30.708	-0.24415	-0.030703	7.6426E-05	NaN	16.473	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220280	+		84569	34563	59016	59108							0.0695410610566114
VKQPAPSK	8	Unmodified	_VKQPAPSK_					0	0	0			REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	REV__ENST00000531788.5_1_6:135639599-135639752:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	427.758352	853.502152	0.22951	9.8176E-05	-0.29549	-0.0001264	-0.065977	-2.8222E-05	427.75807998145973	30.372	0.59227	30.223	29.879	30.471	-0.14952	0.075199	-0.00034867	NaN	16.473	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267430	+		84570	34563	59016	59108							0.0695410610566114
VKQQFYLVS	9	Unmodified	_VKQQFYLVS_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.2762451171875	2	556.310949	1110.60735	0.24538	0.00013651	-0.69947	-0.00038912	-0.45408	-0.00025261	556.3103962838908	77.558	0.83022	77.558	77.252	78.082	0					53	19	4	0	0	0	0.024427	1	9567	9567		34.173	6.2903	1	885220	+		84571	23765	59017	59109	93576	93576					0.05646602511410492
VKQQFYLVS	9	Unmodified	_VKQQFYLVS_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.2769775390625	2	556.310949	1110.60735	0.11887	6.6126E-05	-0.56056	-0.00031185	-0.4417	-0.00024572	556.3105056779707	77.684	0.7905	77.473	77.165	77.956	-0.21087					44	18	3	0	0	0	0.024477	1	9568	9568		20.947	0	1	958590	+		84572	23765	59017	59109	93577	93577					0.05646602511410492
VKQQFYLVS	9	Unmodified	_VKQQFYLVS_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	557.2766723632812	2	556.310949	1110.60735	-0.069442	-3.8631E-05	-0.46637	-0.00025945	-0.53581	-0.00029808	556.3105261726475	77.582	0.92097	77.595	77.231	78.152	0.013504					48	21	3	0	0	0	0.024405	1	9505	9505		44.117	0	1	936980	+		84573	23765	59017	59109	93578	93578					0.05646602511410492
VKQRAKVI	8	Unmodified	_VKQRAKVI_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	471.316369	940.618185	0.61622	0.00029043	3.1445	0.0014821	3.7607	0.0017725	471.3180522381598	50.113	0.29006	50.194	50.054	50.344	0.08099					10	8	2	0	0	0	0.027866	1	5141	5141		30.504	0	1	138370	+		84574	23528	59018	59110	93579	93579					0.14550049676358867
VKQRLDLL	8	Unmodified	_VKQRLDLL_					0	0	0			REV__ENSG00000189420|ENST00000338647|ZFP92	REV__ENSG00000189420|ENST00000338647|ZFP92	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.81329345703125	2	492.813659	983.612765	-0.82114	-0.00040467	0.27892	0.00013745	-0.54222	-0.00026721	492.81384715240534	30.083	0.71518	29.839	29.568	30.284	-0.24415					41	16	3	0	0	0	0.39824	2	1892	1892;1904		97.473	4.3295	1	709600	+		84575	28121	59019	59111	93580;93581	93580					0.12030326093884014
VKQRVAPTME	10	Unmodified	_VKQRVAPTME_					0	0	0			REV__HMOX1|p.R198K|1|0.28|ENSG00000100292|chr22:35387133-35387133|G/A|missense_variant	REV__HMOX1|p.R198K|1|0.28|ENSG00000100292|chr22:35387133-35387133|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	579.7911376953125	2	579.818615	1157.62268	-0.63722	-0.00036947	-1.9968	-0.0011578	-2.634	-0.0015273	579.8170184061212	49.92	0.67236	49.641	49.32	49.992	-0.27977					47	17	4	0	0	0	0.03519	1	4992	4992		21.96	6.3181	1	903350	+		84576	36134	59020	59112	93582	93582					0.050171460369710985
VKQRVINL	8	Unmodified	_VKQRVINL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.3134460449219	2	485.313826	968.613099	-0.19609	-9.5163E-05	-0.68154	-0.00033076	-0.87763	-0.00042592	485.31350998505343	40.188	1.7945	40.076	39.754	41.548	-0.11223					134	49	5	0	0	0	0.52467	1	3511	3511		83.287	3.348	1	28426000			84577	9658	59021	59113	93583	93583					0.12753745813745354
VKQSSDLPL	9	Unmodified	_VKQSSDLPL_					0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2;REV__ENST00000561220.6_1_15:45434150-45457096:+|nuORF	REV__ENSG00000140279|ENST00000389039|DUOX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.3056640625	2	493.779482	985.544411	-1.1757	-0.00058055	2.0402	0.0010074	0.86452	0.00042688	493.7805501510984	69.105	0.62234	68.844	68.547	69.169	-0.26166					21	14	2	0	0	0	0.024541	1	8045	8045		10.866	0	1	206570	+		84578	23997;23792	59022	59114	93584	93584					0.05106036723384477
VKQTGQITV	9	Unmodified	_VKQTGQITV_					0	0	0		nc|ENSG00000211819|A0A0B4J280|TRAV40	nc|ENSG00000211819|A0A0B4J280|TRAV40	nc|ENSG00000211819|A0A0B4J280|TRAV40	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2895812988281	2	487.287474	972.560395	-0.11103	-5.4103E-05	4.259	0.0020754	4.148	0.0020213	487.2894983609172	93.257	1.2939	93.257	92.794	94.088	0					65	30	4	0	0	0	0.56934	1	11844	11844		54.776	1.4249	1	1269400			84579	18702	59023	59115	93585	93585					0.07301742960282809
VKQVHAKK	8	Unmodified	_VKQVHAKK_					0	0	0			REV__ENST00000593859.5_1_19:51322452-51323394:-|nuORF	REV__ENST00000593859.5_1_19:51322452-51323394:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7689514160156	2	469.300719	936.586885	-0.52952	-0.0002485	-1.3268	-0.00062268	-1.8563	-0.00087118	469.2996761286606	25.372	1.0839	25.372	24.653	25.737	0					36	25	2	0	0	0	0.027866	1	1184	1184		26.796	8.4717	1	223170	+		84580	26190	59024	59116	93586	93586					0.11605476642262147
VKQVVKNLN	9	Unmodified	_VKQVVKNLN_					0	0	0		ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.3247680664062	2	521.324391	1040.63423	-0.17093	-8.9111E-05	-0.83739	-0.00043655	-1.0083	-0.00052566	521.3241757669083	49.527	1.3085	49.527	48.934	50.242	0					118	36	6	0	0	0	0.31247	1	5137	5137		73.975	7.5455	1	9390200			84581	1749	59025	59117	93587	93587					0.11553711122610366
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.7952880859375	2	491.795269	981.575986	-0.29263	-0.00014392	1.4777	0.00072673	1.1851	0.00058281	491.7958180674967	47.843	1.5335	47.69	46.659	48.193	-0.153					136	43	4	0	0	0	0.87148	1	4847	4847		53.351	19.836	1	6197300			84582	3010	59026	59118	93588	93588					0.08446074267999393
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.79510498046875	2	491.795269	981.575986	-1.0943	-0.00053818	2.0342	0.0010004	0.93987	0.00046222	491.7961070619947	48.176	2.2411	48.078	47.855	50.096	-0.097553					125	59	4	0	0	0	1.0106	1	4770	4770		35.618	3.6634	1	3339200			84583	3010	59026	59118	93589	93589					0.08446074267999393
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.7957458496094	2	491.795269	981.575986	-1.1222	-0.00055189	2.3564	0.0011589	1.2342	0.000607	491.7962479689419	54.98	1.8175	54.834	54.245	56.062	-0.14609					124	49	3	0	0	0	1.043	1	5870	5870		30.504	2.2494	1	1879000			84584	3010	59026	59118	93590	93590					0.08446074267999393
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.7959899902344	2	491.795269	981.575986	-0.021829	-1.0736E-05	1.1922	0.00058632	1.1704	0.00057558	491.79567731175905	55.087	1.7912	54.856	54.351	56.142	-0.23087					149	49	4	0	0	0	1.043	1	5875	5875		30.504	3.7075	1	2622000			84585	3010	59026	59118	93591	93591					0.08446074267999393
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MSMS	OPSCC_40_ClassI_Rep-2	5	491.79547119140625	2	491.795269	981.575986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.44	1	47.17	46.67	47.67	-0.26939								0	0	0	0.80333	1	4626	4626		34.173	1.3601	1				84586	3010	59026	59118	93592	93592					0.08446074267999393
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7961120605469	2	491.795269	981.575986	0.18124	8.9134E-05	0.94681	0.00046563	1.128	0.00055477	491.7954877774719	47.616	1.6243	47.429	46.316	47.94	-0.18684					123	44	5	0	0	0	1.0284	1	4662	4662		32.812	6.0163	1	5640400			84587	3010	59026	59118	93593	93593					0.08446074267999393
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7959289550781	2	491.795269	981.575986	0.13012	6.3993E-05	0.85662	0.00042128	0.98674	0.00048528	491.79557204432604	48.3	5.1977	48.113	47.902	53.099	-0.18684					252	137	4	0	0	0	1.043	1	4855	4855		30.504	2.2494	1	3829000			84588	3010	59026	59118	93594	93594					0.08446074267999393
VKRAFFSK	8	Unmodified	_VKRAFFSK_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4;DNAJC4|p.E49K|1|0.31|ENSG00000110011|chr11:64231929-64231929|G/A|missense_variant;ENST00000535246.1_3_11:63999367-63999984:+|nuORF;ENST00000537109.1_1_11:63999298-63999511:+|nuORF;ENST00000542376.5_1_11:63999367-64000338:+|nuORF;ENST00000543791.5_1_11:63999367-64000338:+|nuORF	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7962646484375	2	491.795269	981.575986	-0.043829	-2.1555E-05	1.219	0.00059949	1.1752	0.00057794	491.79569659030346	55.146	1.8896	54.94	54.318	56.207	-0.20613					161	51	4	0	0	0	0.89627	1	5863	5863		51.335	10.763	1	3172100			84589	3010	59026	59118	93595	93595					0.08446074267999393
VKRALKSED	9	Unmodified	_VKRALKSED_					0	0	0		nc|ENSG00000162669|A2PYH4-2|HFM1;ENST00000462405.5_1_1:91728075-91813019:-|nuORF;ENSG00000162669|ENST00000370425|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	nc|ENSG00000162669|A2PYH4-2|HFM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.303466796875	2	523.303655	1044.59276	0.82974	0.00043421	-1.2581	-0.00065835	-0.42833	-0.00022415	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	0.91321	1	10291	10291		31.53	1.2121	1	3893600			84590	6974	59027	59119	93596	93596					0.07224530363282611
VKRGLVNTG	9	Unmodified	_VKRGLVNTG_					0	0	0			REV__nc|ENSG00000137409|Q9NZJ7-2|MTCH1	REV__nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28778076171875	2	472.287808	942.561064	0.48131	0.00022732	-0.90639	-0.00042807	-0.42508	-0.00020076	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.80003	1	11674	11674		39.253	10.103	1	42478000	+		84591	23750	59028	59120	93597	93597					0.0874858239999412
VKRGPGNQ	8	Unmodified	_VKRGPGNQ_					0	0	0		ENST00000409714.7_1_2:170460711-170470975:+|nuORF	ENST00000409714.7_1_2:170460711-170470975:+|nuORF	ENST00000409714.7_1_2:170460711-170470975:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.9343566894531	2	428.243401	854.472249	-0.068259	-2.9231E-05	0.47031	0.00020141	0.40205	0.00017218	428.24393010615086	28.182	0.47481	28.03	27.808	28.283	-0.15195					14	11	2	0	0	0	0.027866	1	1621	1621		35.201	9.7505	1	60646			84592	13789	59029	59121	93598	93598					0.039191671603248324
VKRGSLTIA	9	Unmodified	_VKRGSLTIA_					0	0	0		ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant;ENSG00000100403|ENST00000352645|ZC3H7B	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	ZC3H7B|p.H809Tfs*68|1|0.22|ENSG00000100403|chr22:41356377-41356378|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	473.7806701660156	2	472.798009	943.581465	1.6794	0.000794	-2.0248	-0.00095732	-0.34543	-0.00016332	472.7968490964486	23.741	0.51673	23.55	23.321	23.838	-0.19117					24	11	3	0	0	0	0.024457	1	955	955		21.96	0	1	344030			84593	2197	59030	59122	93599	93599					0.1074175305980134
VKRGVKEN	8	Unmodified	_VKRGVKEN_					0	0	0			REV__SAT2|p.E162Rfs*21|1|0.06|ENSG00000141504|chr17:7626476-7626477|-/TCCT|frameshift_variant	REV__SAT2|p.E162Rfs*21|1|0.06|ENSG00000141504|chr17:7626476-7626477|-/TCCT|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.28021240234375	2	465.279983	928.545414	1.4489	0.00067412	-1.362	-0.00063371	0.086852	4.041E-05	465.2792483869207	87.826	1.4105	87.845	87.515	88.925	0.018555					84	33	4	0	0	0	1.0009	1	11004	11004		37.159	1.5408	1	1753000	+		84594	37458	59031	59123	93600	93600					0.07828295882939074
VKRHEMVTEP	10	Unmodified	_VKRHEMVTEP_					0	0	0		ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.8803405761719	3	409.216774	1224.62849	0.16657	6.8164E-05	0.19027	7.7862E-05	0.35684	0.00014603	409.21667950590495	33.762	0.69409	33.758	33.377	34.071	-0.0045624					31	17	2	0	0	0	0.03519	1	2399	2399		15.333	1.2471	1	159530			84595	9986	59032	59124	93601	93601					0.025162445486330398
VKRHEMVTEP	10	Unmodified	_VKRHEMVTEP_					0	0	0		ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	409.216774	1224.62849	0.65997	0.00027007	-0.51506	-0.00021077	0.14491	5.9299E-05	409.2164099659224	33.912	0.78217	33.912	33.626	34.408	0	0.072843	-5.3768E-05	NaN	10.587	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152630			84596	9986	59032	59124							0.025162445486330398
VKRIERPP	8	Unmodified	_VKRIERPP_					0	0	0			REV__ENST00000467324.5_1_2:122513466-122522940:+|nuORF	REV__ENST00000467324.5_1_2:122513466-122522940:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.761474609375	2	497.811451	993.608348	-0.60656	-0.00030195	0.050983	2.538E-05	-0.55558	-0.00027657	497.8116754161404	52.522	0.31635	52.399	52.198	52.515	-0.1237					10	7	2	0	0	0	0.027866	1	5449	5449		17.365	0	1	148010	+		84597	33072	59033	59125	93602	93602					0.11128861670988499
VKRISAVK	8	Unmodified	_VKRISAVK_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.78448486328125	2	450.803094	899.591636	-0.69942	-0.0003153	-3.0481	-0.0013741	-3.7475	-0.0016894	450.8022869555386	28.634	0.45539	28.634	28.449	28.904	0					18	10	3	0	0	0	0.027866	1	1703	1703		66.429	24.033	1	247790			84598	7493	59034	59126	93603	93603					0.13782360785035053
VKRKKMIL	8	Unmodified	_VKRKKMIL_					0	0	0		ENST00000372771.4_1_1:40705712-40705763:+|nuORF	ENST00000372771.4_1_1:40705712-40705763:+|nuORF	ENST00000372771.4_1_1:40705712-40705763:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7958068847656	2	508.344072	1014.67359	0.29047	0.00014766	-0.89126	-0.00045307	-0.60079	-0.00030541	508.343389472303	21.315	0.24007	21.138	21.016	21.256	-0.17721					6	4	2	0	0	0	0.027866	1	643	643		26.796	7.4361	1	23971			84599	13053	59035	59127	93604	93604					0.16684139872484138
VKRKLSPSF	9	Unmodified	_VKRKLSPSF_					0	0	0			REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	REV__ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3040771484375	2	531.326934	1060.63931	0.39339	0.00020902	1.0127	0.00053809	1.4061	0.00074711	531.327279950938	19.67	0.19902	19.47	19.355	19.554	-0.2001					5	3	2	0	0	0	0.024506	1	437	437		16.473	0	1	7781.1	+		84600	21102	59036	59128	93605	93605					0.1114201498521652
VKRKMKSS	8	Unmodified	_VKRKMKSS_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.2563781738281	2	482.292037	962.56952	-0.67816	-0.00032707	-3.0656	-0.0014785	-3.7438	-0.0018056	482.29040055682475	39.244	0.42545	39.145	38.843	39.269	-0.098755					19	11	2	0	0	0	0.027866	1	3335	3335		6.3127	0	1	153630			84601	5868	59037	59129	93606	93606					0.08673813044958933
VKRLEKQNL	9	Unmodified	_VKRLEKQNL_					0	0	0		ENST00000466256.6_1_1:17257024-17267483:+|nuORF;CROCC|p.L1854Rfs*2|1|0.12|ENSG00000058453|chr1:16970362-16970375|TGGCTCAGCTGGAA/-|frameshift_variant;ENSG00000058453|ENST00000375541|CROCC	ENST00000466256.6_1_1:17257024-17267483:+|nuORF	ENST00000466256.6_1_1:17257024-17267483:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.8058471679688	2	564.348397	1126.68224	-0.65829	-0.0003715	0.0094271	5.3202E-06	-0.64886	-0.00036618	564.3481485351479	56.648	1.1084	56.648	56.351	57.459	0					72	30	4	0	0	0	0.024477	1	6289	6289		27.882	1.1893	1	1660200			84602	589	59038	59130	93607	93607					0.12396785042665215
VKRLFEDL	8	Unmodified	_VKRLFEDL_					0	0	0		ENST00000581216.5_2_17:29233661-29233769:-|nuORF	ENST00000581216.5_2_17:29233661-29233769:-|nuORF	ENST00000581216.5_2_17:29233661-29233769:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7641296386719	2	510.297842	1018.58113	-0.61149	-0.00031204	-0.00038319	-1.9554E-07	-0.61188	-0.00031224	510.2976602394255	25.717	0.45542	25.49	25.231	25.686	-0.22683					22	10	3	0	0	0	0.027866	1	1272	1272		33.516	0	1	131430			84603	17161	59039	59131	93608	93608					0.07258333339939327
VKRLGHIDSK	10	Unmodified	_VKRLGHIDSK_					0	0	0			REV__ENST00000581937.1_1_18:9678609-9679128:-|nuORF	REV__ENST00000581937.1_1_18:9678609-9679128:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	577.2984008789062	2	576.846022	1151.67749	-0.50415	-0.00029082	2.2147	0.0012776	1.7106	0.00098674	576.8470315714595	93.074	0.5491	93.081	92.801	93.35	0.0077286					29	12	4	0	0	0	0.03519	1	11701	11701		37.812	11.119	1	80164	+		84604	35537	59040	59132	93609	93609					0.10771900899885622
VKRLGNID	8	Unmodified	_VKRLGNID_					0	0	0			REV__ENSG00000167916|ENST00000264651|KRT24;REV__CON__Q9Z2K1	REV__ENSG00000167916|ENST00000264651|KRT24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.77862548828125	2	457.774534	913.534515	0.47353	0.00021677	-0.41711	-0.00019094	0.056421	2.5828E-05	457.7742725829095	42.587	0.68047	42.587	42.322	43.002	0					29	18	2	0	0	0	0.027866	1	3982	3982		19.36	0	1	3053100	+	+	84605	19578;19590	59041	59133	93610	93610					0.07428893508654255
VKRLISFLFLL	11	Unmodified	_VKRLISFLFLL_					0	0	0			REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	REV__nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7789001464844	3	450.295353	1347.86423	0.29835	0.00013434	0.51846	0.00023346	0.81681	0.0003678	450.295647068909	54.211	0.61302	54.013	53.827	54.44	-0.19739					21	16	2	0	0	0	0.02477	1	5765	5765		22.562	8.4756	1	159970	+		84606	23737	59042	59134	93611	93611					0.204211247355488
VKRLKVESE	9	Unmodified	_VKRLKVESE_					0	0	0		nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1;nc|ENSG00000156384|Q86XK3-2|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	nc|ENSG00000156384|Q86XK3-3|SFR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.730224609375	2	544.327131	1086.63971	-0.55152	-0.00030021	3.6329	0.0019775	3.0814	0.0016773	544.3289367487552	51.957	0.47625	51.838	51.61	52.086	-0.11875					22	12	2	0	0	0	0.024527	1	5342	5342		18.262	0	1	550090			84607	6523	59043	59135	93612	93612					0.09985389914436382
VKRLVKILL	9	Unmodified	_VKRLVKILL_					0	0	0		ENSG00000120063|ENST00000439174|GNA13	ENSG00000120063|ENST00000439174|GNA13	ENSG00000120063|ENST00000439174|GNA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8319091796875	2	541.394619	1080.77469	-0.95009	-0.00051437	2.7583	0.0014933	1.8082	0.00097897	541.8969958082768	75.5	0.18741	75.255	75.116	75.303	-0.24455					6	4	2	0	0	0	0.024541	1	9232	9232		17.365	5.1581	1	150350			84608	3791	59044	59136	93613	93613					0.23752914846841122
VKRMSLLE	8	Unmodified	_VKRMSLLE_					0	0	0			REV__ENST00000354752.5_1_9:99922575-99942308:-|nuORF	REV__ENST00000354752.5_1_9:99922575-99942308:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7982177734375	2	488.28642	974.558287	-0.61593	-0.00030075	0.7635	0.00037281	0.14757	7.2058E-05	488.28681268279433	50.567	0.67738	50.648	50.243	50.92	0.080994					26	19	2	0	0	0	0.027866	1	5192	5192		23.042	6.5693	1	223370	+		84609	30759	59045	59137	93614	93614					0.0699899095083083
VKRNKLSR	8	Unmodified	_VKRNKLSR_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2783508300781	2	500.82235	999.630147	0.11638	5.8288E-05	1.1776	0.00058978	1.294	0.00064807	500.8226935450088	61.14	0.94847	61.211	60.831	61.779	0.071129					52	24	4	0	0	0	0.027866	1	6928	6928		38.806	8.3025	1	1734900	+		84610	22351	59046	59138	93615	93615					0.130316664195675
VKRNTFRSICQ	11	Unmodified	_VKRNTFRSICQ_					0	0	0			REV__ENST00000606893.5_1_6:110533295-110551331:+|nuORF	REV__ENST00000606893.5_1_6:110533295-110551331:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.7611083984375	3	451.246956	1350.71904	-0.98334	-0.00044373	1.6188	0.00073046	0.63541	0.00028673	451.24760962277884	38.876	0.13546	38.711	38.625	38.761	-0.16458					5	3	2	0	0	0	0.024809	1	3238	3238		8.4073	0	1	479360	+		84611	26259	59047	59139	93616	93616					0.057707135969394585
VKRPKLLI	8	Unmodified	_VKRPKLLI_					0	0	0		nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.7895812988281	2	483.844762	965.674971	-0.030718	-1.4863E-05	-3.7513	-0.0018151	-3.782	-0.0018299	483.8430103932889	45.968	0.10154	45.968	45.885	45.986	0					4	2	2	0	0	0	0.027866	1	4509	4509		8.8223	4.1406	1	67796			84612	3713	59048	59140	93617	93617					0.19076097232891698
VKRPRQRPS	9	Unmodified	_VKRPRQRPS_					0	0	0			REV__ENSG00000167094|ENST00000373289|TTC16	REV__ENSG00000167094|ENST00000373289|TTC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	562.31103515625	2	562.343981	1122.67341	0.028792	1.6191E-05	-1.4618	-0.00082201	-1.433	-0.00080582	562.3429379374887	87.125	1.2055	87.125	86.561	87.767	0					55	28	3	0	0	0	0.024436	1	11021	11021		23.042	1.0826	1	162190	+		84613	26101	59049	59141	93618	93618					0.11697856196815337
VKRPVLEGQ	9	Unmodified	_VKRPVLEGQ_					0	0	0		ENSG00000163704|ENST00000412055|PRRT3;nc|ENSG00000163704|Q5FWE3-3|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	ENSG00000163704|ENST00000412055|PRRT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.3108520507812	2	513.308741	1024.60293	-0.83253	-0.00042735	4.4093	0.0022634	3.5768	0.001836	513.3109833319763	64.986	1.6108	65.023	64.555	66.166	0.037384					101	43	4	0	0	0	0.22902	1	7577	7577		85.161	2.9203	1	14191000			84614	7134	59050	59142	93619	93619					0.09161138088529697
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	445.63623046875	3	445.638001	1333.89217	-0.14356	-6.3977E-05	-4.2216	-0.0018813	-4.3652	-0.0019453	445.6360158251409	38.894	1.0496	38.894	38.721	39.771	0					135	29	5	0	0	0	1.0788	3	3287	3287;3299;3322		17.167	7.5206	1	5170400	+		84615	25910	59051	59143	93620;93621;93622	93620					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	445.6361389160156	3	445.638001	1333.89217	-0.79268	-0.00035325	-3.6523	-0.0016276	-4.445	-0.0019808	445.63625327080524	39.407	1.0337	39.431	39.242	40.275	0.023727					123	28	5	0	0	0	1.096	1	3368	3368		12.433	3.221	1	3933600	+		84616	25910	59051	59143	93623	93623					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	445.6357116699219	3	445.638001	1333.89217	-0.41799	-0.00018627	-4.0577	-0.0018083	-4.4757	-0.0019945	445.63608809011873	40.543	1.8033	40.566	40.051	41.854	0.023006					203	50	5	0	0	0	1.0621	6	3523	3499;3510;3523;3535;3546;3560		21.78	7.6944	1	7582000	+		84617	25910	59051	59143	93624;93625;93626;93627;93628;93629	93626					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.63604736328125	3	445.638001	1333.89217	-0.52599	-0.0002344	-3.814	-0.0016997	-4.34	-0.0019341	445.6361772627151	40.212	1.7286	40.062	39.629	41.358	-0.1497					166	45	5	0	0	0	1.0811	1	3480	3480		16.53	6.8837	1	4197600	+		84618	25910	59051	59143	93630	93630					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.7268981933594	3	445.638001	1333.89217	-0.8236	-0.00036703	-3.5446	-0.0015796	-4.3682	-0.0019466	445.63628889836	38.955	1.1431	38.79	38.625	39.768	-0.16458					123	30	5	0	0	0	0.02486	1	3302	3302		8.7993	5.588	1	3668400	+		84619	25910	59051	59143	93631	93631					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.9710693359375	3	445.638001	1333.89217	-0.54838	-0.00024438	-3.7238	-0.0016594	-4.2721	-0.0019038	445.63621864370356	39.086	1.1722	38.863	38.721	39.893	-0.22311					117	30	5	0	0	0	1.0621	1	3307	3307		21.78	12.134	1	3399800	+		84620	25910	59051	59143	93632	93632					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.63604736328125	3	445.638001	1333.89217	-0.22348	-9.959E-05	-4.1616	-0.0018546	-4.3851	-0.0019542	445.6360074128349	40.438	2.0072	40.213	39.658	41.665	-0.225					176	52	4	0	0	0	1.0941	2	3490	3490;3544		12.957	3.3113	1	5821200	+		84621	25910	59051	59143	93633;93634	93633					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	445.6361389160156	3	445.638001	1333.89217	-0.97497	-0.00043448	-3.3561	-0.0014956	-4.3311	-0.0019301	445.6363691293585	40.465	1.7994	40.235	39.851	41.651	-0.23021					187	47	5	0	0	0	1.0941	4	3496	3483;3496;3511;3520		12.957	6.6366	1	4700100	+		84622	25910	59051	59143	93635;93636;93637;93638	93636					0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	445.638001	1333.89217	-0.14356	-6.3977E-05	-4.2216	-0.0018813	-4.3652	-0.0019453	445.6360158251409	38.894	1.0496	38.894	38.721	39.771	0	0.01914	-0.00036895	NaN	12.957	135	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5170400	+		84623	25910	59051	59143							0.23858447715633702
VKRQPKLLKPK	11	Unmodified	_VKRQPKLLKPK_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	445.638001	1333.89217	-0.58172	-0.00025924	-3.8063	-0.0016962	-4.388	-0.0019555	445.6361941580526	39.023	1.1456	38.924	38.772	39.918	-0.098755	0.049755	0.00018632	NaN	12.957	127	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4067900	+		84624	25910	59051	59143							0.23858447715633702
VKRRLLEV	8	Unmodified	_VKRRLLEV_					0	0	0			REV__nc|ENSG00000196365|P36776-2|LONP1	REV__nc|ENSG00000196365|P36776-2|LONP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.25421142578125	2	506.834926	1011.6553	-0.15277	-7.7428E-05	0.2786	0.0001412	0.12583	6.3776E-05	506.83488393291424	56.602	0.84293	56.434	56.124	56.967	-0.1672					40	21	3	0	0	0	0.027866	1	6109	6109		10.866	4.13	1	652350	+		84625	28171	59052	59144	93639	93639					0.14993721222128897
VKRRLLEV	8	Unmodified	_VKRRLLEV_					0	0	0			REV__nc|ENSG00000196365|P36776-2|LONP1	REV__nc|ENSG00000196365|P36776-2|LONP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.2565612792969	2	506.834926	1011.6553	0.13344	6.7633E-05	-0.10958	-5.5538E-05	0.023863	1.2095E-05	506.8346884825265	56.63	0.57606	56.428	56.171	56.747	-0.20208					33	14	3	0	0	0	0.027866	1	6109	6109		30.504	8.5438	1	827040	+		84626	28171	59052	59144	93640	93640					0.14993721222128897
VKRRRHTL	8	Unmodified	_VKRRRHTL_					0	0	0			REV__SPATA17|p.P204R|1|0.56|ENSG00000162814|chr1:217774425-217774425|C/G|missense_variant	REV__SPATA17|p.P204R|1|0.56|ENSG00000162814|chr1:217774425-217774425|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.33984375	2	533.341241	1064.66793	0.56165	0.00029955	-2.9162	-0.0015553	-2.3546	-0.0012558	533.339545522493	98.05	0.94133	97.914	97.56	98.501	-0.13626					56	22	3	0	0	0	1.0338	1	12159	12159		31.955	12.595	1	1206100	+		84627	37570	59053	59145	93641	93641					0.1381817740502811
VKRRRRWYFRV	11	Unmodified	_VKRRRRWYFRV_					0	0	0		ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.24853515625	4	406.247018	1620.95897	0.17203	6.9888E-05	3.9484	0.001604	4.1204	0.0016739	406.2486217566342	87.93	2.3085	87.751	87.363	89.672	-0.17875					59	55	2	0	0	0	1.1135	9	10658	10658;10669;10693;10729;10741;10765;10789;10802;10835		1.3219	0.98142	1	91211000			84628	11122	59054	59146	93642;93643;93644;93645;93646;93647;93648;93649;93650	93642					0.17332496050084956
VKRRRRWYFRV	11	Unmodified	_VKRRRRWYFRV_					0	0	0		ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.24908447265625	4	406.247018	1620.95897	-0.071125	-2.8894E-05	3.9772	0.0016157	3.9061	0.0015868	406.24863586850125	87.901	2.2035	87.764	87.373	89.576	-0.13743					56	52	2	0	0	0	1.1135	10	10698	10652;10698;10722;10758;10771;10784;10810;10821;10834;10840		6.001	5.6605	1	67155000			84629	11122	59054	59146	93651;93652;93653;93654;93655;93656;93657;93658;93659;93660	93652					0.17332496050084956
VKRRVNALK	9	Unmodified	_VKRRVNALK_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;NAP1L1|p.A93Vfs*45|1|0.16|ENSG00000187109|chr12:76060181-76060208|AGATCGTGAACTTCCTCATAGAATTTGG/-|frameshift_variant;ENST00000549988.5_1_12:76453547-76478450:-|nuORF	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3621215820312	2	542.359099	1082.70365	-0.13622	-7.3882E-05	0.12314	6.6788E-05	-0.013081	-7.0944E-06	542.3589504214738	17.102	0.18127	16.959	16.867	17.048	-0.14278					6	4	2	0	0	0	1.0101	1	122	122		18.324	6.1176	1	15481			84630	9608	59055	59147	93661	93661					0.1656021486201098
VKRRVNALK	9	Unmodified	_VKRRVNALK_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1;NAP1L1|p.A93Vfs*45|1|0.16|ENSG00000187109|chr12:76060181-76060208|AGATCGTGAACTTCCTCATAGAATTTGG/-|frameshift_variant;ENST00000549988.5_1_12:76453547-76478450:-|nuORF	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	542.359099	1082.70365	2.9555	0.001603	-3.4516	-0.001872	-0.49607	-0.00026905	542.3571419367647	16.964	0.15296	16.964	16.907	17.06	0	0.0024336	-0.00070375	NaN	18.324	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17888			84631	9608	59055	59147							0.1656021486201098
VKRRVPGL	8	Unmodified	_VKRRVPGL_					0	0	0		ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2635498046875	2	462.808711	923.602869	0.38839	0.00017975	2.6428	0.0012231	3.0312	0.0014029	462.8097009265902	69.138	1.1464	68.845	68.405	69.551	-0.29269					53	29	3	0	0	0	0.027866	1	8264	8264		28.254	7.7724	1	1567600			84632	7351	59056	59148	93662	93662					0.13801182879183216
VKRRVPGL	8	Unmodified	_VKRRVPGL_					0	0	0		ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	462.808711	923.602869	-0.31221	-0.00014449	3.3236	0.0015382	3.0114	0.0013937	462.81004978397175	68.85	0.64124	68.85	68.56	69.202	0	0.025331	0.00058977	NaN	20.482	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1637300			84633	7351	59056	59148							0.13801182879183216
VKRRVPGL	8	Unmodified	_VKRRVPGL_					0	0	0		ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	462.808711	923.602869	0.46463	0.00021503	2.6401	0.0012219	3.1048	0.0014369	462.8097395502139	68.865	0.93974	68.88	68.607	69.546	0.015129	0.054963	-4.283E-05	NaN	20.482	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1644900			84634	7351	59056	59148							0.13801182879183216
VKRRVPGL	8	Unmodified	_VKRRVPGL_					0	0	0		ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	462.808711	923.602869	-0.77274	-0.00035763	3.4047	0.0015757	2.632	0.0012181	462.8101333687835	69.128	0.62614	68.866	68.626	69.252	-0.26165	0.041467	0.00066487	NaN	20.482	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	740710			84635	7351	59056	59148							0.13801182879183216
VKRRVPGL	8	Unmodified	_VKRRVPGL_					0	0	0		ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	462.808711	923.602869	0.25983	0.00012025	2.1005	0.00097214	2.3604	0.0010924	462.809518756886	69.011	0.77541	68.768	68.509	69.284	-0.24277	-0.056509	-0.0005423	NaN	20.482	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659250			84636	7351	59056	59148							0.13801182879183216
VKRRVPGL	8	Unmodified	_VKRRVPGL_					0	0	0		ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	462.808711	923.602869	-0.04639	-2.1469E-05	1.9765	0.00091476	1.9301	0.00089329	462.80946581366834	68.97	0.57507	68.739	68.52	69.095	-0.23048	-0.085459	-0.00065707	NaN	20.482	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588670			84637	7351	59056	59148							0.13801182879183216
VKRTGGPAP	9	Unmodified	_VKRTGGPAP_					0	0	0		ENST00000573951.1_1_16:3313772-3314576:+|nuORF	ENST00000573951.1_1_16:3313772-3314576:+|nuORF	ENST00000573951.1_1_16:3313772-3314576:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.78802490234375	2	441.761426	881.5083	-0.3541	-0.00015643	2.8492	0.0012587	2.4951	0.0011023	441.76160246223174	41.39	0.62675	41.163	40.807	41.434	-0.2278					33	15	3	0	0	0	0.02435	1	3627	3627		51.335	29.376	1	186120			84638	17076	59057	59149	93663	93663					0.06280624337182417
VKRTIHNL	8	Unmodified	_VKRTIHNL_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.802734375	2	490.803626	979.592698	-0.073491	-3.607E-05	0.28414	0.00013946	0.21065	0.00010339	490.8035980678856	17.447	0.29956	17.24	17.065	17.364	-0.20669					10	5	3	0	0	0	0.74904	1	174	174		63.306	2.3343	1	106520			84639	7034	59058	59150	93664	93664					0.10208575153933452
VKRVKPSL	8	Unmodified	_VKRVKPSL_					0	0	0			REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF	REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.2762451171875	2	463.810919	925.607286	-0.54059	-0.00025073	-0.3457	-0.00016034	-0.88629	-0.00041107	463.8105560755846	37.978	0.44773	38.006	37.782	38.23	0.027275					19	12	2	0	0	0	0.027866	1	3048	3048		29.15	3.6994	1	207060	+		84640	31880	59059	59151	93665	93665					0.1415064730207405
VKRVYRLAKD	10	Unmodified	_VKRVYRLAKD_					0	0	0		ENSG00000168350|ENST00000305631|DEGS2	ENSG00000168350|ENST00000305631|DEGS2	ENSG00000168350|ENST00000305631|DEGS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	624.376708984375	2	624.382771	1246.75099	-0.38101	-0.0002379	-4.1453	-0.0025883	-4.5263	-0.0028262	624.3801142496206	100.73	0.45973	100.6	100.31	100.77	-0.12504					31	13	3	0	0	0	1.1265	1	12518	12518		24.519	0	1	407080			84641	7813	59060	59152	93666	93666					0.13748449342347158
VKRWIRVG	8	Unmodified	_VKRWIRVG_					0	0	0			REV__ENST00000490912.5_1_7:26240373-26240535:-|nuORF	REV__ENST00000490912.5_1_7:26240373-26240535:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7923583984375	2	507.321986	1012.62942	0.088417	4.4856E-05	-1.6739	-0.00084922	-1.5855	-0.00080436	507.32106873717197	67.777	0.6881	67.777	67.568	68.256	0					33	17	3	0	0	0	0.027866	1	8168	8168		12.959	0	1	825590	+		84642	33713	59061	59153	93667	93667					0.12360871770522408
VKSALIVQ	8	Unmodified	_VKSALIVQ_					0	0	0		ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1	ENSG00000065600|ENST00000261455|PACC1	ENSG00000065600|ENST00000261455|PACC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	429.73779296875	2	429.276378	856.538203	-1.0017	-0.00043003	1.4852	0.00063757	0.48348	0.00020755	429.27709430361875	25.077	0.70295	25.043	24.771	25.474	-0.034395					22	16	2	0	0	0	0.027866	1	1111	1111		53.351	0	1	88161			84643	1311	59062	59154	93668	93668					0.10419563282528088
VKSAPRDQ	8	Unmodified	_VKSAPRDQ_					0	0	0			REV__ENSG00000189186|ENST00000451261|DCAF8L2	REV__ENSG00000189186|ENST00000451261|DCAF8L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.78448486328125	2	450.748516	899.482479	-0.34255	-0.00015441	0.26394	0.00011897	-0.078616	-3.5436E-05	450.74848161341396	29.012	0.45735	29.015	28.672	29.129	0.0031376					15	10	2	0	0	0	0.027866	1	1699	1699		66.429	22.052	1	66917	+		84644	28107	59063	59155	93669	93669					0.028717300948983393
VKSCFQNMEI	10	Unmodified	_VKSCFQNMEI_					0	0	0		nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000163349|Q86Z02-2|HIPK1;nc|ENSG00000064393|Q9H2X6-2|HIPK2	nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	599.3113403320312	2	599.783384	1197.55222	-1.3332	-0.00079965	-0.88633	-0.0005316	-2.2196	-0.0013313	599.7821111598566	82.503	0.30045	82.529	82.401	82.701	0.025711					10	6	2	0	0	0	0.03519	1	10244	10244		47.657	1.6851	1	54712			84645	7061;1273	59064	59156	93670	93670					-0.03865895343005832
VKSDPSHSPF	10	Unmodified	_VKSDPSHSPF_					0	0	0		ENSG00000196782|ENST00000509479|MAML3	ENSG00000196782|ENST00000509479|MAML3	ENSG00000196782|ENST00000509479|MAML3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8245239257812	2	550.772188	1099.52982	-0.060623	-3.339E-05	-4.4027	-0.0024249	-4.4633	-0.0024583	550.7695136573218	36.748	0.51984	36.554	36.214	36.734	-0.19378					20	12	3	0	0	0	0.03519	1	2868	2868		58.782	10.866	1	92642			84646	9921	59065	59157	93671	93671					-0.015960354247454234
VKSEPEENI	9	Unmodified	_VKSEPEENI_					0	0	0		ENSG00000032219|ENST00000355431|ARID4A;ARID4A|p.D569Wfs*5|1|0.31|ENSG00000032219|chr14:58353706-58353709|AGAC/-|frameshift_variant;nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3095703125	2	522.764029	1043.5135	-1.0643	-0.00055638	0.75267	0.00039347	-0.31163	-0.00016291	522.7642376379678	32.4	0.7556	32.4	32.109	32.865	0					57	19	5	0	0	0	0.022482	1	2245	2245		72.879	3.2516	1	1073100			84647	1014	59066	59158	93672	93672					-0.006511613815291639
VKSFFIRQ	8	Unmodified	_VKSFFIRQ_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.M1923Ifs*12|1|0.24|ENSG00000118058|chr11:118498047-118498048|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2794799804688	2	512.800552	1023.58655	1.2894	0.00066121	1.4922	0.00076521	2.7816	0.0014264	512.8010876109522	18.953	0.49419	18.953	18.724	19.218	0					23	9	3	0	0	0	0.027866	1	348	348		24.203	3.2558	1	38950			84648	3667	59067	59159	93673	93673					0.07570056922418189
VKSFLSVLN	9	Unmodified	_VKSFLSVLN_					0	0	0		ENSG00000166349|ENST00000299440|RAG1;nc|ENSG00000166349|P15918-2|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.2671813964844	2	503.800217	1005.58588	0.23821	0.00012001	1.6717	0.00084221	1.9099	0.00096223	504.3017406589699	71.571	0.7543	71.582	71.2	71.954	0.010735					26	19	2	0	0	0	0.024288	1	8574	8574		52.937	12.159	1	431780			84649	7546	59068	59160	93674	93674					0.083312174826915
VKSGLQRL	8	Unmodified	_VKSGLQRL_					0	0	0			REV__nc|ENSG00000117090|Q13291-4|SLAMF1	REV__nc|ENSG00000117090|Q13291-4|SLAMF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.7853088378906	2	450.784902	899.55525	0.027053	1.2195E-05	-1.1807	-0.00053224	-1.1536	-0.00052005	450.78445917154596	28.47	2.1759	28.551	28.167	30.343	0.080812					127	53	5	0	0	0	0.68164	1	1651	1651		68.787	0	1	29153000	+		84650	36596	59069	59161	93675	93675					0.10145483888311446
VKSGWEAPD	9	Unmodified	_VKSGWEAPD_					0	0	0			REV__ENST00000524614.1_1_11:124545226-124566136:+|nuORF	REV__ENST00000524614.1_1_11:124545226-124566136:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7672119140625	2	494.740357	987.46616	-0.38334	-0.00018966	1.9843	0.0009817	1.6009	0.00079205	494.7408709327759	40.725	0.30579	40.748	40.629	40.934	0.023006					15	8	2	0	0	0	0.024457	1	3565	3565		15.642	0	1	80228	+		84651	20278	59070	59162	93676	93676					-0.028073958618620054
VKSLDGISNI	10	Unmodified	_VKSLDGISNI_					0	0	0		nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4	nc|ENSG00000114698|Q9NRQ2-2|PLSCR4	nc|ENSG00000114698|Q9NRQ2-2|PLSCR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2673950195312	2	523.298039	1044.58152	-0.62754	-0.00032839	0.59803	0.00031295	-0.029505	-1.544E-05	523.2982504909361	26.943	0.71953	26.93	26.415	27.134	-0.012983					37	17	3	0	0	0	0.03519	1	1402	1402		56.721	19.562	1	167840			84652	3376	59071	59163	93677	93677					0.061017082691250835
VKSMWYPE	8	Unmodified	_VKSMWYPE_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.3162841796875	2	520.249503	1038.48445	-0.49522	-0.00025764	4.0337	0.0020985	3.5385	0.0018409	520.2511955085887	66.032	0.32753	65.818	65.588	65.915	-0.21327					11	7	2	0	0	0	0.027866	1	7574	7574		29.15	7.1897	1	95194			84653	1481	59072	59164	93678	93678					-0.033249772115368614
VKSMWYPE	8	Unmodified	_VKSMWYPE_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	520.249503	1038.48445	-0.23039	-0.00011986	3.4279	0.0017834	3.1975	0.0016635	520.2514183975384	65.57	0.39484	65.57	65.326	65.721	0	-0.081616	0.00030999	NaN	10.265	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201470			84654	1481	59072	59164							-0.033249772115368614
VKSMWYPE	8	Unmodified	_VKSMWYPE_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.249503	1038.48445	-0.15636	-8.1344E-05	2.2937	0.0011933	2.1373	0.001112	520.2510299541252	65.846	0.32816	65.573	65.43	65.758	-0.27282	-0.078243	-0.00087016	NaN	10.265	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268920			84655	1481	59072	59164							-0.033249772115368614
VKSMWYPE	8	Unmodified	_VKSMWYPE_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.249503	1038.48445	-0.26692	-0.00013886	3.1439	0.0016356	2.877	0.0014967	520.2513492316773	65.606	0.46984	65.644	65.389	65.859	0.037376	-0.0074515	1.4444E-05	NaN	10.265	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339710			84656	1481	59072	59164							-0.033249772115368614
VKSNEIKSC	9	Unmodified	_VKSNEIKSC_					0	0	0		ENSG00000147138|ENST00000645147|GPR174	ENSG00000147138|ENST00000645147|GPR174	ENSG00000147138|ENST00000645147|GPR174	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2615966796875	2	504.263142	1006.51173	0.29971	0.00015113	-3.8821	-0.0019576	-3.5824	-0.0018065	504.26112780311314	70.883	0.58217	70.669	70.461	71.043	-0.21425					32	13	3	0	0	0	0.17822	1	8259	8259		93.195	2.8256	1	2042100			84657	5938	59073	59165	93679	93679					0.00873506328878193
VKSNLAIAR	9	Unmodified	_VKSNLAIAR_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.3031311035156	2	486.303458	970.592364	-0.11046	-5.3718E-05	-0.62688	-0.00030485	-0.73734	-0.00035857	486.30316316197457	47.719	1.2822	47.443	47.044	48.326	-0.27598					88	34	4	0	0	0	0.80003	1	4671	4671		39.253	0	1	15986000			84658	8799	59074	59166	93680	93680					0.10589155434081476
VKSQFVPTP	9	Unmodified	_VKSQFVPTP_					0	0	0			REV__ENST00000567727.5_1_16:2089927-2093790:-|nuORF	REV__ENST00000567727.5_1_16:2089927-2093790:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.7817077636719	2	501.784567	1001.55458	-0.58724	-0.00029467	-4.0166	-0.0020155	-4.6038	-0.0023101	501.78240977670066	28.519	0.92817	28.515	28.157	29.085	-0.0042					44	21	3	0	0	0	0.14024	1	1654	1654		101.6	5.4103	1	1379500	+		84659	35326	59075	59167	93681	93681					0.05386644448606148
VKSQFVPTP	9	Unmodified	_VKSQFVPTP_					0	0	0			REV__ENST00000567727.5_1_16:2089927-2093790:-|nuORF	REV__ENST00000567727.5_1_16:2089927-2093790:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.784567	1001.55458	-0.72298	-0.00036278	-3.4818	-0.0017471	-4.2048	-0.0021099	501.78274319536473	28.344	0.49418	28.175	27.886	28.38	-0.16897	-0.19749	0.00031959	NaN	101.6	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374100	+		84660	35326	59075	59167							0.05386644448606148
VKSQFVPTP	9	Unmodified	_VKSQFVPTP_					0	0	0			REV__ENST00000567727.5_1_16:2089927-2093790:-|nuORF	REV__ENST00000567727.5_1_16:2089927-2093790:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.784567	1001.55458	-0.7907	-0.00039676	-3.9286	-0.0019713	-4.7193	-0.0023681	501.78262676693936	28.371	0.48414	28.219	28	28.484	-0.15195	-0.1532	-0.00012877	NaN	101.6	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398160	+		84661	35326	59075	59167							0.05386644448606148
VKSQIWSAYS	10	Unmodified	_VKSQIWSAYS_					0	0	0			REV__nc|ENSG00000052344|Q16651-2|PRSS8	REV__nc|ENSG00000052344|Q16651-2|PRSS8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3363647460938	2	584.803488	1167.59242	-0.36714	-0.0002147	0.21398	0.00012514	-0.15315	-8.9565E-05	584.8037151643082	73.756	0.43156	73.479	73.214	73.645	-0.2769					17	10	2	0	0	0	0.03519	1	8688	8688		51.193	16.041	1	149070	+		84662	20172	59076	59168	93682	93682					0.01533110643413238
VKSSCRKL	8	Unmodified	_VKSSCRKL_					0	0	0			REV__ENST00000262735.9_1_22:46639202-46639412:+|nuORF	REV__ENST00000262735.9_1_22:46639202-46639412:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.75018310546875	2	460.770937	919.527321	-0.91095	-0.00041974	-2.9387	-0.0013541	-3.8496	-0.0017738	460.7694402919266	38.306	0.50538	38.306	38.134	38.639	0					26	13	3	0	0	0	0.027866	1	3181	3181		39.253	28.387	1	658560	+		84663	29670	59077	59169	93683	93683					0.0643383763657539
VKSSCRKL	8	Unmodified	_VKSSCRKL_					0	0	0			REV__ENST00000262735.9_1_22:46639202-46639412:+|nuORF	REV__ENST00000262735.9_1_22:46639202-46639412:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.75042724609375	2	460.770937	919.527321	-1.1034	-0.00050841	-2.972	-0.0013694	-4.0754	-0.0018778	460.76944707211254	38.469	0.69262	38.496	38.23	38.923	0.027279					43	18	3	0	0	0	0.027866	1	3140	3140		62.107	16.155	1	554010	+		84664	29670	59077	59169	93684	93684					0.0643383763657539
VKSSLGPVGLD	11	Unmodified	_VKSSLGPVGLD_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000545764.1_1_6:160208906-160209185:-|nuORF;ENST00000536607.1_1_6:160208906-160210500:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.832275390625	2	536.305864	1070.59717	-0.01827	-9.7984E-06	0.31158	0.0001671	0.29331	0.0001573	536.306009010925	78.331	0.94128	78.1	77.92	78.861	-0.23141					32	21	3	0	0	0	0.024761	1	9367	9367		20.837	2.5751	1	238280			84665	3814	59078	59170	93685	93685					0.06469994786198185
VKSTAPIAFI	10	Unmodified	_VKSTAPIAFI_					0	0	0			REV__ENST00000521467.5_1_8:72740403-72875206:+|nuORF	REV__ENST00000521467.5_1_8:72740403-72875206:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3001098632812	2	523.815867	1045.61718	-0.89577	-0.00046922	-0.37947	-0.00019877	-1.2752	-0.00066799	523.8155832185562	96.098	0.66237	96.098	95.778	96.44	0					22	15	2	0	0	0	0.03519	1	12282	12282		45.972	29.499	1	109370	+		84666	34317	59079	59171	93686	93686					0.0961979051680828
VKSTAPIAFI	10	Unmodified	_VKSTAPIAFI_					0	0	0			REV__ENST00000521467.5_1_8:72740403-72875206:+|nuORF	REV__ENST00000521467.5_1_8:72740403-72875206:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.815867	1045.61718	0.29299	0.00015347	-1.1621	-0.00060873	-0.86912	-0.00045526	523.8148540160203	95.877	0.79481	95.883	95.689	96.484	0.0065079	-0.12741	-0.00037913	NaN	45.972	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129670	+		84667	34317	59079	59171							0.0961979051680828
VKSTAPIAFI	10	Unmodified	_VKSTAPIAFI_					0	0	0			REV__ENST00000521467.5_1_8:72740403-72875206:+|nuORF	REV__ENST00000521467.5_1_8:72740403-72875206:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.815867	1045.61718	0.82725	0.00043333	-1.8928	-0.00099147	-1.0655	-0.00055814	523.8149737899064	96.049	0.61647	96.051	95.782	96.399	0.0020752	0.040508	-0.0011446	NaN	45.972	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96491	+		84668	34317	59079	59171							0.0961979051680828
VKSTLTTLS	9	Unmodified	_VKSTLTTLS_					0	0	0		ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	ENST00000607005.5_1_5:477473-477927:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2603454589844	2	475.281857	948.549162	-0.35583	-0.00016912	-0.71803	-0.00034127	-1.0739	-0.00051039	475.2814384115047	43.738	0.53536	43.593	43.279	43.814	-0.14471					28	14	3	0	0	0	0.024292	1	4106	4106		32.812	11.865	1	330840			84669	17572	59080	59172	93687	93687					0.07282920866123277
VKSVDLALK	9	Unmodified	_VKSVDLALK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.25030517578125	2	486.808042	971.601532	0.08921	4.3428E-05	-1.3748	-0.00066925	-1.2856	-0.00062583	486.80724707779353	33.24	0.47139	33.296	33.105	33.577	0.056572					20	12	2	0	0	0	0.024427	1	2309	2309		34.173	0	1	190060			84670	10614	59081	59173	93688	93688					0.11459503999731169
VKTAAQRK	8	Unmodified	_VKTAAQRK_					0	0	0		nc|ENSG00000112701|Q9GZR1-2|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.28472900390625	2	451.282526	900.550499	-0.15261	-6.887E-05	4.3375	0.0019574	4.1848	0.0018885	451.28432060037784	53.821	0.64495	53.576	53.275	53.92	-0.2453					47	19	3	0	0	0	0.93274	1	5652	5652		47.916	3.7988	1	5271500			84671	18180	59082	59174	93689	93689					0.09624599745552587
VKTDKVHKL	9	Unmodified	_VKTDKVHKL_					0	0	0			REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	REV__ENST00000550917.1_1_12:32879649-32880297:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7511596679688	2	534.332216	1066.64988	-0.58302	-0.00031153	0.32712	0.00017479	-0.25591	-0.00013674	534.3324985175133	40.136	0.23173	39.911	39.773	40.004	-0.225					9	5	2	0	0	0	0.024374	1	3420	3420		40.778	3.6191	1	89955	+		84672	34919	59083	59175	93690	93690					0.11921997639660731
VKTEMDKLSS	10	Unmodified	_VKTEMDKLSS_					0	0	0		nc|ENSG00000172489|Q8NGG3|OR5T3	nc|ENSG00000172489|Q8NGG3|OR5T3	nc|ENSG00000172489|Q8NGG3|OR5T3	MSMS	OPSCC_40_ClassI_Rep-2	5	569.2955932617188	2	569.294639	1136.57472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.354	1	45.102	44.602	45.602	-0.25252								0	0	0	0.50561	1	4279	4279		67.494	14.557	1				84673	18520	59084	59176	93691	93691					0.011900273262654082
VKTFPSNVF	9	Unmodified	_VKTFPSNVF_					0	0	0			REV__ENST00000425586.5_1_13:50618805-50623788:-|nuORF	REV__ENST00000425586.5_1_13:50618805-50623788:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.784423828125	2	519.784567	1037.55458	-0.59279	-0.00030813	-0.02368	-1.2308E-05	-0.61647	-0.00032043	519.7843991214319	48.832	0.83168	48.552	48.218	49.049	-0.27977					60	22	4	0	0	0	0.56934	1	4859	4859		54.776	0	1	4017100	+		84674	32258	59085	59177	93692	93692					0.037306444486148393
VKTGCTSHAR	10	Unmodified	_VKTGCTSHAR_					0	0	0			REV__ENSG00000155897|ENST00000286355|ADCY8	REV__ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2982177734375	2	530.271832	1058.52911	-1.0132	-0.00053729	1.0781	0.00057169	0.06487	3.4399E-05	530.7739536867732	51.858	0.1094	51.95	51.894	52.003	0.091938					4	2	2	0	0	0	0.03519	1	5465	5465		30.318	2.4355	1	45636	+		84675	25036	59086	59178	93693	93693					0.002188466545248957
VKTGKLCKP	9	Unmodified	_VKTGKLCKP_					0	0	0			REV__ENST00000469535.5_1_1:207934598-207940656:+|nuORF	REV__ENST00000469535.5_1_1:207934598-207940656:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.2406921386719	2	487.296788	972.579022	0.50168	0.00024447	-0.77281	-0.00037659	-0.27112	-0.00013212	487.29628685888247	47.968	0.52534	47.781	47.561	48.086	-0.18684					25	13	2	0	0	0	0.024405	1	4692	4692		35.618	6.4687	1	663800	+		84676	33129	59087	59179	93694	93694					0.09163581330483339
VKTHLCVDP	9	Unmodified	_VKTHLCVDP_					0	0	0			REV__ENST00000418696.5_2_16:90060228-90061249:+|nuORF	REV__ENST00000418696.5_2_16:90060228-90061249:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.26605224609375	2	506.268227	1010.5219	-0.9592	-0.00048561	-4.2628	-0.0021581	-5.222	-0.0026437	506.26651750700626	62.875	1.3015	62.636	62.264	63.566	-0.23926					106	35	5	0	0	0	0.4752	1	7273	7273		60.972	8.0352	1	4047000	+		84677	32124	59088	59180	93695	93695					0.017061140540931774
VKTIDVASHS	10	Unmodified	_VKTIDVASHS_					0	0	0			REV__nc|ENSG00000171723|Q9NQX3|GPHN	REV__nc|ENSG00000171723|Q9NQX3|GPHN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2466430664062	2	528.787838	1055.56112	0.15464	8.1774E-05	4.2074	0.0022248	4.362	0.0023066	528.790096935458	59.345	0.52354	59.164	58.872	59.395	-0.18134					18	12	2	0	0	0	0.03519	1	6527	6527		24.519	8.8774	1	182830	+		84678	26594	59089	59181	93696	93696					0.035565376093245504
VKTIEHEHGK	10	Unmodified	_VKTIEHEHGK_					0	0	0			REV__ENST00000461942.5_1_9:116083780-116093329:-|nuORF	REV__ENST00000461942.5_1_9:116083780-116093329:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3195190429688	2	589.319837	1176.62512	-0.90214	-0.00053165	-0.27654	-0.00016297	-1.1787	-0.00069462	589.3195484938886	54.186	0.6967	54.038	53.748	54.445	-0.14723					59	19	4	0	0	0	1.0616	1	5878	5878		37.812	2.6595	1	3073900	+		84679	24600	59090	59182	93697	93697					0.0438731776628174
VKTIKTLPL	9	Unmodified	_VKTIKTLPL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8309020996094	2	506.841885	1011.66922	-0.7081	-0.00035889	0.16178	8.1997E-05	-0.54632	-0.0002769	506.84186091712064	46.645	0.57635	46.451	46.238	46.814	-0.19387					38	16	3	0	0	0	0.024418	1	4536	4536		23.523	6.8053	1	1129500			84680	2338	59091	59183	93698	93698					0.16384953930560187
VKTKFDLLI	9	Unmodified	_VKTKFDLLI_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.8186645507812	2	538.839342	1075.66413	-0.084243	-4.5393E-05	0.65658	0.00035379	0.57234	0.0003084	538.8393114416716	74.458	0.39247	74.194	74.054	74.446	-0.26326					12	8	2	0	0	0	0.024535	1	8783	8783		25.45	3.4903	1	89482	+		84681	21022	59092	59184	93699	93699					0.12932650067932627
VKTKKSTK	8	Unmodified	_VKTKKSTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	461.2555847167969	2	460.300384	918.586216	-0.28846	-0.00013278	2.3357	0.0010751	2.0473	0.00094237	460.3021731745954	46.354	0.60663	46.092	45.854	46.461	-0.26118					32	15	3	0	0	0	0.027866	1	4446	4446		11.511	0	1	342030			84682	1147	59093	59185	93700	93700					0.12366637202569564
VKTKSLEP	8	Unmodified	_VKTKSLEP_					0	0	0		nc|ENSG00000114805|Q4KWH8-2|PLCH1;PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2827453613281	2	451.271293	900.528032	-0.058806	-2.6537E-05	0.66363	0.00029948	0.60482	0.00027294	451.2713556346745	78.696	0.46011	78.714	78.4	78.86	0.018677					18	10	2	0	0	0	0.027866	1	9667	9667		8.2313	0	1	242270			84683	3386	59094	59186	93701	93701					0.07378955557283007
VKTLFRNSC	9	Unmodified	_VKTLFRNSC_					0	0	0		SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	SMG1|p.K3131Sfs*4|1|0.16|ENSG00000157106|chr16:18829496-18829497|TT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.7926025390625	2	534.286951	1066.55935	-1.0923	-0.00058362	-2.7507	-0.0014697	-3.843	-0.0020533	534.7872186076246	44.252	0.34988	44.147	43.889	44.239	-0.10468					18	9	3	0	0	0	0.02366	1	4126	4126		46.457	0	1	1877500			84684	6575	59095	59187	93702	93702					0.028732053197245477
VKTLIQPI	8	Unmodified	_VKTLIQPI_					0	0	0			REV__ENSG00000146476|ENST00000367294|ARMT1	REV__ENSG00000146476|ENST00000367294|ARMT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.7582092285156	2	456.299853	910.585153	-0.41153	-0.00018778	3.0019	0.0013698	2.5904	0.001182	456.30096241249515	47.003	1.3433	47.062	46.766	48.109	0.059097					71	38	3	0	0	0	0.027866	1	4632	4632		73.975	26.059	1	337200	+		84685	24496	59096	59188	93703	93703					0.1262842283365444
VKTLLKAK	8	Unmodified	_VKTLLKAK_					0	0	0			REV__ENSG00000119283|ENST00000366653|TRIM67	REV__ENSG00000119283|ENST00000366653|TRIM67	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.78448486328125	2	450.81567	899.616788	-0.70127	-0.00031614	0.16161	7.2857E-05	-0.53966	-0.00024329	450.81487152298877	28.701	0.37165	28.701	28.49	28.862	0					14	8	3	0	0	0	0.027866	1	1703	1703		51.335	14.176	1	126030	+		84686	22446	59097	59189	93704	93704					0.16296415587601132
VKTRLKGQKPN	11	Unmodified	_VKTRLKGQKPN_					0	0	0			REV__nc|ENSG00000160710|P55265-3|ADAR	REV__nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	634.8931274414062	2	634.893503	1267.77245	0.41338	0.00026245	-1.871	-0.0011879	-1.4576	-0.00092541	634.8925865119255	104.35	1.0618	104.35	103.98	105.04	0					81	29	5	0	0	0	0.98542	1	13394	13394		40.058	0.80534	1	1987300	+		84687	25338	59098	59190	93705	93705					0.14927834371087556
VKTRLKGQKPN	11	Unmodified	_VKTRLKGQKPN_					0	0	0			REV__nc|ENSG00000160710|P55265-3|ADAR	REV__nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	634.892822265625	2	634.893503	1267.77245	-0.8856	-0.00056226	-0.78632	-0.00049923	-1.6719	-0.0010615	634.8932926299759	104.48	1.2787	104.35	103.91	105.19	-0.12928					115	41	5	0	0	0	1.0238	1	13009	13009		31.53	1.2121	1	1402800	+		84688	25338	59098	59190	93706	93706					0.14927834371087556
VKTSWRGRV	9	Unmodified	_VKTSWRGRV_					0	0	0		ENST00000396722.2_1_17:41158964-41164381:+|nuORF	ENST00000396722.2_1_17:41158964-41164381:+|nuORF	ENST00000396722.2_1_17:41158964-41164381:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.8236083984375	2	544.819807	1087.62506	0.92509	0.000504	1.7341	0.00094477	2.6592	0.0014488	544.8205090762251	98.64	1.3744	98.515	98.197	99.571	-0.12413					70	34	3	0	0	0	0.50848	1	12314	12314		58.782	3.2778	1	834230			84689	13562	59099	59191	93707	93707					0.08475362556941946
VKTVSSLLL	9	Unmodified	_VKTVSSLLL_					0	0	0			REV__ENSG00000119326|ENST00000325551|CTNNAL1	REV__ENSG00000119326|ENST00000325551|CTNNAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.29193115234375	2	480.310418	958.606283	-0.24329	-0.00011686	-2.5641	-0.0012316	-2.8074	-0.0013484	480.30919976193275	56.032	0.41511	55.875	55.678	56.093	-0.15656					16	10	2	0	0	0	0.024405	1	6082	6082		53.351	12.573	1	449440	+		84690	22449	59100	59192	93708	93708					0.12532388142540185
VKVAATLTAM	10	Unmodified	_VKVAATLTAM_					0	0	0		ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	ENSG00000197496|ENST00000359271|SLC2A10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.3067932128906	2	502.794078	1003.5736	0.29769	0.00014968	0.94615	0.00047572	1.2438	0.0006254	502.7935587227192	23.309	0.48463	23.107	22.873	23.358	-0.20193					23	10	3	0	0	0	0.03519	1	902	902		19.997	0	1	106550			84691	10007	59101	59193	93709	93709					0.071958577480018
VKVAQPIGAP	10	Unmodified	_VKVAQPIGAP_					0	0	0			REV__ENST00000504528.2_1_4:113747508-113747850:+|nuORF	REV__ENST00000504528.2_1_4:113747508-113747850:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.3001403808594	2	490.300384	978.586216	-0.5999	-0.00029413	1.8641	0.00091397	1.2642	0.00061983	490.3002892838921	63.076	0.74804	62.837	62.492	63.24	-0.23926					53	18	4	0	0	0	0.91051	1	7331	7331		53.351	7.3995	1	2597100	+		84692	33986	59102	59194	93710	93710					0.09606637202557522
VKVATTTTG	9	Unmodified	_VKVATTTTG_					0	0	0			REV__ENST00000460874.6_1_9:21802747-21802786:+|nuORF	REV__ENST00000460874.6_1_9:21802747-21802786:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.25225830078125	2	439.2531	876.491647	0.69602	0.00030573	-1.9582	-0.00086013	-1.2621	-0.0005544	439.25217434324423	90.16	0.91758	90.022	89.575	90.493	-0.13824					54	21	4	0	0	0	0.99726	1	11002	11002		20.947	0.4651	1	1418600	+		84693	32865	59103	59195	93711	93711					0.048460786605687645
VKVCYVLWAS	10	Unmodified	_VKVCYVLWAS_					0	0	0		ENST00000342287.9_2_9:128728684-128729074:+|nuORF	ENST00000342287.9_2_9:128728684-128729074:+|nuORF	ENST00000342287.9_2_9:128728684-128729074:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	585.2409057617188	2	584.315177	1166.6158	-1.7968	-0.0010499	-1.0772	-0.00062941	-2.874	-0.0016793	584.3147171645187	39.26	0.56632	39.161	38.914	39.48	-0.098755					20	15	2	0	0	0	0.03519	1	3327	3327		35.618	7.736	1	118040			84694	12507	59104	59196	93712	93712					0.039158331563839965
VKVDDLSLN	9	Unmodified	_VKVDDLSLN_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.7790832519531	2	501.776939	1001.53933	-0.53761	-0.00026976	-4.3809	-0.0021982	-4.9185	-0.002468	501.7747197820525	45.512	0.23538	45.364	45.214	45.449	-0.1488					9	6	2	0	0	0	0.023454	1	4409	4409		71.877	15.156	1	485430	+		84695	20736	59105	59197	93713	93713					0.03861732860775646
VKVEIEKLD	9	Unmodified	_VKVEIEKLD_					0	0	0		ENST00000541974.5_1_6:163418555-163736016:+|nuORF	ENST00000541974.5_1_6:163418555-163736016:+|nuORF	ENST00000541974.5_1_6:163418555-163736016:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3425903320312	2	536.816064	1071.61758	-0.93739	-0.00050321	-1.1143	-0.00059819	-2.0517	-0.0011014	536.8154199616732	27.527	0.29139	27.527	27.361	27.653	0					10	7	2	0	0	0	0.02435	1	1496	1496		34.173	0	1	78450			84696	16446	59106	59198	93714	93714					0.08463165446005405
VKVFLADLD	9	Unmodified	_VKVFLADLD_					0	0	0			REV__nc|ENSG00000169031|Q01955-3|COL4A3	REV__nc|ENSG00000169031|Q01955-3|COL4A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.2735595703125	2	510.292225	1018.5699	-0.13203	-6.7374E-05	2.4155	0.0012326	2.2835	0.0011652	510.2933532373554	90.544	0.70163	90.527	90.038	90.739	-0.016716					29	16	3	0	0	0	0.024405	1	11421	11421		44.117	8.4985	1	225130	+		84697	36911	59107	59199	93715	93715					0.06135511245793168
VKVFSVVHS	9	Unmodified	_VKVFSVVHS_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.29083251953125	2	501.292559	1000.57057	-0.38963	-0.00019532	-4.2687	-0.0021399	-4.6584	-0.0023352	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.62163	1	10677	10677		51.335	5.3632	1	8504000			84698	6526	59108	59200	93716	93716					0.07030350685522535
VKVFSVVHS	9	Unmodified	_VKVFSVVHS_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2901611328125	2	501.292559	1000.57057	-0.55827	-0.00027985	-3.5602	-0.0017847	-4.1184	-0.0020645	501.2907010769845	83.142	2.6701	83.168	81.579	84.249	0.02655					168	62	4	0	0	0	0.92825	1	10394	10394		30.504	0	1	2156900			84699	6526	59108	59200	93717	93717					0.07030350685522535
VKVGRVLEL	9	Unmodified	_VKVGRVLEL_					0	0	0		nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF	nc|ENSG00000101158|Q8IXH7-3|NELFCD	nc|ENSG00000101158|Q8IXH7-3|NELFCD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.2664489746094	2	506.829309	1011.64407	-0.56366	-0.00028568	-1.4516	-0.00073574	-2.0153	-0.0010214	506.828099162123	45.295	0.40601	45.084	44.91	45.316	-0.21109					14	11	2	0	0	0	0.024397	1	4254	4254		31.53	0	1	134360			84700	15268	59109	59201	93718	93718					0.1387089912798274
VKVGSRFRI	9	Unmodified	_VKVGSRFRI_					0	0	0			REV__ENST00000486335.1_1_2:74702161-74702799:-|nuORF	REV__ENST00000486335.1_1_2:74702161-74702799:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3191528320312	2	531.33255	1060.65055	-0.62845	-0.00033391	3.139	0.0016679	2.5106	0.001334	531.33410700223	93.611	0.12744	93.617	93.519	93.646	0.0059891					4	2	2	0	0	0	0.024367	1	11813	11813		44.377	7.2181	1	51661	+		84701	33585	59110	59202	93719	93719					0.12264837079374047
VKVGVSYKLN	10	Unmodified	_VKVGVSYKLN_					0	0	0		ENST00000557271.5_1_14:105211116-105211251:+|nuORF;ENSG00000185100|ENST00000330877|ADSS1;nc|ENSG00000185100|Q8N142-2|ADSS1	ENST00000557271.5_1_14:105211116-105211251:+|nuORF	ENST00000557271.5_1_14:105211116-105211251:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8302612304688	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.1088	1	11077	11077		31.53	2.3598	1	6921700			84702	9408	59111	59203	93720	93720					0.10094577919812764
VKVIAINDLN	10	Unmodified	_VKVIAINDLN_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.8319091796875	2	549.829506	1097.64446	-0.43179	-0.00023741	4.0928	0.0022503	3.661	0.0020129	549.8317110257594	105.19	0.52906	105.19	104.96	105.49	0.00096893					25	16	2	0	0	0	0.57594	1	13465	13465		79.713	16.179	1	422930			84703	5151	59112	59204	93721	93721					0.0995427405719056
VKVIFHPE	8	Unmodified	_VKVIFHPE_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.8159484863281	2	484.781828	967.549102	-0.61473	-0.00029801	3.051	0.0014791	2.4363	0.0011811	484.7828361435745	66.326	0.57973	66.113	65.834	66.414	-0.21327					20	14	2	0	0	0	0.027866	1	7630	7630		38.806	0	1	106570			84704	2601	59113	59205	93722	93722					0.06402965656798187
VKVKAQTID	9	Unmodified	_VKVKAQTID_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2804870605469	2	501.303124	1000.5917	0.87749	0.00043989	2.9553	0.0014815	3.8328	0.0019214	501.3044237760636	96.972	0.88982	96.848	96.528	97.417	-0.12368					30	19	2	0	0	0	0.024381	1	12024	12024		21.96	6.3181	1	229990			84705	4127	59114	59206	93723	93723					0.09142315994370165
VKVKKKLD	8	Unmodified	_VKVKKKLD_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.7926025390625	2	479.326402	956.638252	0.60707	0.00029099	-1.9534	-0.00093631	-1.3463	-0.00064533	479.32535355149514	53.883	0.31692	53.883	53.726	54.043	0					12	8	2	0	0	0	0.027866	1	5870	5870		42.474	19.432	1	138970			84706	7399	59115	59207	93724	93724					0.15819800616316115
VKVKKKLD	8	Unmodified	_VKVKKKLD_					0	0	0		nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.792724609375	2	479.326402	956.638252	0.16681	7.9957E-05	-2.3304	-0.001117	-2.1636	-0.0010371	479.32519482188053	53.975	0.34285	53.828	53.711	54.054	-0.14723					12	9	2	0	0	0	0.027866	1	5872	5872		52.299	32.302	1	120740			84707	7399	59115	59207	93725	93725					0.15819800616316115
VKVKKLKNL	9	Unmodified	_VKVKKLKNL_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.2609252929688	2	535.376426	1068.7383	-0.38299	-0.00020504	-0.75438	-0.00040388	-1.1374	-0.00060892	535.3763399804228	24.531	0.11887	24.316	24.218	24.336	-0.2151					4	2	2	0	0	0	0.024354	1	1078	1078		47.916	3.3845	1	31387			84708	8502	59116	59208	93726	93726					0.20668037950122198
VKVKLTLVD	9	Unmodified	_VKVKLTLVD_					0	0	0		ENST00000563743.1_1_16:30393079-30393866:-|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000180096|ENST00000321367|SEPTIN1	ENST00000563743.1_1_16:30393079-30393866:-|nuORF	ENST00000563743.1_1_16:30393079-30393866:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.83392333984375	2	507.831517	1013.64848	0.72093	0.00036611	2.5937	0.0013172	3.3146	0.0016833	507.8328452439654	106.91	0.58641	106.91	106.68	107.26	0					29	18	2	0	0	0	0.99229	1	13731	13731		21.96	0	1	161030			84709	8960	59117	59209	93727	93727					0.1422036355089631
VKVKVEPI	8	Unmodified	_VKVKVEPI_					0	0	0		ENSG00000141568|ENST00000335255|FOXK2;nc|ENSG00000141568|Q01167-2|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7589111328125	2	456.299853	910.585153	0.3415	0.00015583	2.1609	0.00098604	2.5024	0.0011419	456.3006492951697	47.099	1.2638	47.099	46.515	47.779	0					68	35	3	0	0	0	0.027866	1	4703	4703		79.451	10.664	1	306090			84710	5504	59118	59210	93728	93728					0.1262842283365444
VKVKVEPI	8	Unmodified	_VKVKVEPI_					0	0	0		ENSG00000141568|ENST00000335255|FOXK2;nc|ENSG00000141568|Q01167-2|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.75921630859375	2	456.299853	910.585153	0.35964	0.0001641	1.8978	0.00086598	2.2575	0.0010301	456.30060551309634	47.321	1.2816	47.168	46.514	47.795	-0.15301					59	35	2	0	0	0	0.027866	1	4709	4709		79.451	21.64	1	211520			84711	5504	59118	59210	93729	93729					0.1262842283365444
VKVKVEPI	8	Unmodified	_VKVKVEPI_					0	0	0		ENSG00000141568|ENST00000335255|FOXK2;nc|ENSG00000141568|Q01167-2|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	ENSG00000141568|ENST00000335255|FOXK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.299853	910.585153	0.053624	2.4469E-05	2.6564	0.0012121	2.71	0.0012366	456.3009015206997	47.143	1.4427	46.874	46.415	47.858	-0.26939	-0.17684	0.00012839	NaN	79.451	87	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499850			84712	5504	59118	59210							0.1262842283365444
VKVLAKPHQM	10	Unmodified	_VKVLAKPHQM_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034-2|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.843505859375	2	575.841894	1149.66923	-2.0743	-0.0011945	3.9478	0.0022733	1.8735	0.0010789	575.8440262915791	90.799	3.5728	90.799	89.856	93.429	0					292	85	5	0	0	0	1.0393	2	11529	11529;11730		40.778	2.1737	1	5238400			84713	1238;18054	59119	59211	93730;93731	93730					0.10038630658914371
VKVLAKPHQM	10	Unmodified	_VKVLAKPHQM_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034-2|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.843017578125	2	575.841894	1149.66923	-0.10957	-6.3095E-05	1.9835	0.0011422	1.8739	0.0010791	575.8429154034562	90.929	3.3979	90.94	90.041	93.438	0.011276					296	81	5	0	0	0	1.089	1	11514	11514		34.173	1.3601	1	4935500			84714	1238;18054	59119	59211	93732	93732					0.10038630658914371
VKVLAKPHQM	10	Unmodified	_VKVLAKPHQM_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034-2|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8435668945312	2	575.841894	1149.66923	-0.77613	-0.00044693	2.6848	0.001546	1.9087	0.0010991	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0393	2	11158	11158;11170		40.778	4.3314	1	6382400			84715	1238;18054	59119	59211	93733;93734	93733					0.10038630658914371
VKVLAKPHQM	10	Unmodified	_VKVLAKPHQM_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034-2|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2;nc|ENSG00000060709|O15034|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8427734375	2	575.841894	1149.66923	0.019504	1.1231E-05	1.8334	0.0010558	1.8529	0.001067	575.8428148215032	91.052	3.4474	90.913	89.996	93.444	-0.13942					222	81	3	0	0	0	1.0393	2	11166	11166;11238		40.778	5.6261	1	5880000			84716	1238;18054	59119	59211	93735;93736	93735					0.10038630658914371
VKVLDVDLV	9	Unmodified	_VKVLDVDLV_					0	0	0		nc|ENSG00000222009|C9JJ37-2|BTBD19;ENST00000482715.5_1_1:45274492-45278998:+|nuORF;ENSG00000222009|ENST00000450269|BTBD19	nc|ENSG00000222009|C9JJ37-2|BTBD19	nc|ENSG00000222009|C9JJ37-2|BTBD19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.31854248046875	2	500.307875	998.601197	0.5802	0.00029028	-0.49593	-0.00024812	0.084272	4.2162E-05	500.30715182282313	96.561	0.7881	96.568	96.269	97.057	0.0065079					33	17	3	0	0	0	0.024477	1	12287	12287		35.618	12.576	1	273880			84717	10635	59120	59212	93737	93737					0.10184084279899253
VKVLEKATM	9	Unmodified	_VKVLEKATM_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8033752441406	2	509.801903	1017.58925	0.56391	0.00028748	2.8432	0.0014495	3.4071	0.0017369	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.67687	1	10348	10348		47.657	6.8792	1	3699900	+		84718	28494	59121	59213	93738	93738					0.08116144265056846
VKVLFIRPV	9	Unmodified	_VKVLFIRPV_					0	0	0			REV__ENST00000498209.6_1_11:2937879-2942743:+|nuORF	REV__ENST00000498209.6_1_11:2937879-2942743:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.7863159179688	2	535.85787	1069.70119	-1.5717	-0.00084222	0.58692	0.00031451	-0.98481	-0.00052772	535.8580391918738	55.25	0.88269	55.348	55.083	55.965	0.098015					51	23	4	0	0	0	0.024541	1	6104	6104		17.365	0.89182	1	1395200	+		84719	21865	59122	59214	93739	93739					0.16912366404380919
VKVLLGLK	8	Unmodified	_VKVLLGLK_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.28765869140625	2	435.312764	868.610974	-0.61264	-0.00026669	-2.8669	-0.001248	-3.4795	-0.0015147	435.31184003991984	26.099	0.22803	25.863	25.72	25.948	-0.23603					7	5	2	0	0	0	0.027866	1	1289	1289		7.6903	6.2255	1	82329			84720	3774	59123	59215	93740	93740					0.17141317075925144
VKVLLKQK	8	Unmodified	_VKVLLKQK_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF	REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3057556152344	2	478.33677	954.658987	-0.3141	-0.00015025	-2.8081	-0.0013432	-3.1222	-0.0014935	478.3354929392494	32.107	0.354	32.17	31.961	32.315	0.062885					10	8	2	0	0	0	0.027866	1	2152	2152		18.324	0	1	38569	+		84721	29701	59124	59216	93741	93741					0.17984390995979993
VKVLNCDTI	9	Unmodified	_VKVLNCDTI_					0	0	0		ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000196576|ENST00000359337|PLXNB2;ENSG00000076356|ENST00000367033|PLXNA2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF;ENSG00000076356|ENST00000367033|PLXNA2	ENST00000479701.5_1_22:50714135-50720918:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.308349609375	2	502.775885	1003.53722	-0.49635	-0.00024955	-1.5529	-0.00078077	-2.0493	-0.0010303	502.77474065559903	65.604	0.62598	65.332	65.055	65.681	-0.27282					26	17	2	0	0	0	0.024344	1	7725	7725		54.776	7.119	1	335570			84722	9894;1582	59125	59217	93742	93742					0.0355898085130093
VKVLTGQGETE	11	Unmodified	_VKVLTGQGETE_					0	0	0			REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	REV__nc|ENSG00000151952|Q14C87-2|TMEM132D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	581.7802734375	2	580.81151	1159.60847	-0.9756	-0.00056664	2.6213	0.0015225	1.6457	0.00095583	580.8121912323077	44.734	0.51048	44.635	44.431	44.942	-0.099449					24	12	3	0	0	0	0.024762	1	4184	4184		17.468	0	1	306110	+		84723	24807	59126	59218	93743	93743					0.03504772089695507
VKVQFFSSN	9	Unmodified	_VKVQFFSSN_					0	0	0		nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;ENSG00000132958|ENST00000697147|TPTE2;ENST00000445572.5_1_13:25163437-25171624:+|nuORF;nc|ENSG00000132958|Q6XPS3-6|TPTE2	nc|ENSG00000132958|Q6XPS3-5|TPTE2	nc|ENSG00000132958|Q6XPS3-5|TPTE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7357788085938	2	528.279649	1054.54475	-0.65674	-0.00034694	0.18982	0.00010028	-0.46693	-0.00024667	528.2794274811816	60.249	0.39946	60.073	59.922	60.322	-0.1761					13	9	2	0	0	0	0.024319	1	6733	6733		24.519	0	1	165040			84724	4667	59127	59219	93744	93744					0.0196545644323578
VKVQLIGVD	9	Unmodified	_VKVQLIGVD_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.26654052734375	2	485.800217	969.585882	0.25347	0.00012314	-1.6378	-0.00079566	-1.3844	-0.00067252	485.79956543937095	67.836	0.49332	67.598	67.334	67.827	-0.23814					17	11	2	0	0	0	0.024477	1	7842	7842		35.618	5.1146	1	104370	+		84725	24030	59128	59220	93745	93745					0.09987217482705546
VKVRPVLLP	9	Unmodified	_VKVRPVLLP_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1;REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7887878417969	2	510.850045	1019.68554	0.29669	0.00015156	3.3172	0.0016946	3.6139	0.0018461	510.85205844650454	85.725	0.25018	85.53	85.301	85.552	-0.19508					6	5	2	0	0	0	0.024541	1	10357	10357		7.6903	0	1	85507	+		84726	24428;36753	59129	59221	93746	93746					0.17648079887305812
VKVRPVLLP	9	Unmodified	_VKVRPVLLP_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1;REV__nc|ENSG00000145734|A6H8Y1-3|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7894592285156	2	510.850045	1019.68554	0.30477	0.00015569	-1.0703	-0.00054676	-0.76552	-0.00039107	510.8494622967799	85.678	0.41824	85.541	85.284	85.702	-0.13752					12	9	2	0	0	0	0.024535	1	10386	10386		25.45	6.0902	1	45415	+		84727	24428;36753	59129	59221	93747	93747					0.17648079887305812
VKVSAAPGPAD	11	Unmodified	_VKVSAAPGPAD_					0	0	0		ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ALMS1|p.M3079Rfs*24|1|0.31|ENSG00000116127|chr2:73491195-73491195|T/-|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	ALMS1|p.T3760Lfs*8|1|0.07|ENSG00000116127|chr2:73573153-73573154|-/GT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.2748718261719	2	506.277106	1010.53966	-0.49819	-0.00025222	0.96428	0.00048819	0.46608	0.00023597	506.27749652421954	56.182	0.92963	56.026	55.678	56.608	-0.15655					54	23	4	0	0	0	0.75995	1	6085	6085		60.118	1.3363	1	1675000			84728	64	59130	59222	93748	93748					0.03481152580604885
VKVSAPPMA	9	Unmodified	_VKVSAPPMA_					0	0	0			REV__ENSG00000183018|ENST00000329078|SPNS2	REV__ENSG00000183018|ENST00000329078|SPNS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.27447509765625	2	450.254588	898.494624	0.318	0.00014318	2.1415	0.00096424	2.4595	0.0011074	450.25529535441024	92.314	0.39439	92.323	92.152	92.546	0.0094147					19	9	3	0	0	0	0.024292	1	11638	11638		49.442	37.235	1	262890	+		84729	27525	59131	59223	93749	93749					0.04131630513722939
VKVSARVGAEG	11	Unmodified	_VKVSARVGAEG_					0	0	0			REV__ENST00000483658.1_1_3:123881162-123881255:+|nuORF	REV__ENST00000483658.1_1_3:123881162-123881255:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3422241210938	2	536.809105	1071.60366	-0.93652	-0.00050273	1.2272	0.00065875	0.29064	0.00015602	536.8102132150264	27.3	0.3385	27.144	26.887	27.225	-0.15664					10	6	2	0	0	0	0.024745	1	1479	1479		27.047	5.0874	1	65802	+		84730	33517	59132	59224	93750	93750					0.07071932737562747
VKVSDRGKPPR	11	Unmodified	_VKVSDRGKPPR_					0	0	0		ENSG00000156453|ENST00000287008|PCDH1;nc|ENSG00000156453|Q08174|PCDH1;ENST00000511044.1_1_5:141242715-141245657:-|nuORF	ENSG00000156453|ENST00000287008|PCDH1	ENSG00000156453|ENST00000287008|PCDH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.870028	1237.7255	-0.66003	-0.00040914	-0.31019	-0.00019228	-0.97023	-0.00060142	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0392	1	11564	11564		28.081	0	1	5229800			84731	6528	59133	59225	93751	93751					0.11614974819917734
VKVSEPPL	8	Unmodified	_VKVSEPPL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.75933837890625	2	434.760561	867.506569	0.64611	0.00028091	-3.6542	-0.0015887	-3.0081	-0.0013078	434.75893033757467	86.807	1.5618	86.807	86.128	87.69	0					94	36	5	0	0	0	1.0009	1	10892	10892		37.159	3.6435	1	5395200			84732	6479	59134	59226	93752	93752					0.06751570528570028
VKVSEPPL	8	Unmodified	_VKVSEPPL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.2525634765625	2	434.760561	867.506569	0.091165	3.9635E-05	-0.060695	-2.6388E-05	0.03047	1.3247E-05	434.7605356575858	78.399	0.61742	78.399	78.082	78.7	0					20	14	2	0	0	0	0.027866	1	9672	9672		30.504	5.0535	1	115800			84733	6479	59134	59226	93753	93753					0.06751570528570028
VKVSEPPL	8	Unmodified	_VKVSEPPL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.75921630859375	2	434.760561	867.506569	0.063598	2.765E-05	-2.9827	-0.0012968	-2.9191	-0.0012691	434.75923619358696	86.978	1.558	86.791	86.167	87.725	-0.18696					82	36	4	0	0	0	0.97924	1	10556	10556		40.573	7.057	1	6540900			84734	6479	59134	59226	93754	93754					0.06751570528570028
VKVSLTKGFQ	10	Unmodified	_VKVSLTKGFQ_					0	0	0			REV__ENST00000525751.5_1_1:40034389-40035574:-|nuORF	REV__ENST00000525751.5_1_1:40034389-40035574:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.830078125	2	553.832049	1105.64954	0.31464	0.00017426	-4.0369	-0.0022358	-3.7222	-0.0020615	553.8296747582538	87.083	2.4623	87.083	85.708	88.17	0					172	58	4	0	0	0	1.1088	1	10920	10920		31.53	1.2121	1	1317800	+		84735	20882	59135	59227	93755	93755					0.10094577919790026
VKVSLTKGFQ	10	Unmodified	_VKVSLTKGFQ_					0	0	0			REV__ENST00000525751.5_1_1:40034389-40035574:-|nuORF	REV__ENST00000525751.5_1_1:40034389-40035574:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.829833984375	2	553.832049	1105.64954	0.21415	0.0001186	-4.0285	-0.0022311	-3.8143	-0.0021125	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	1.0719	2	11148	11148;11196		36.447	2.5251	1	4967900	+		84736	20882	59135	59227	93756;93757	93756					0.10094577919790026
VKVTADMVK	9	Oxidation (M)	_VKVTADM(Oxidation (M))VK_		VKVTADM(1)VK		VKVTADM(120)VK	0	0	1		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.78253173828125	2	503.78371	1005.55287	-0.4164	-0.00020978	-3.2367	-0.0016306	-3.6531	-0.0018404	503.7818695110624	52.771	0.73791	52.771	52.311	53.049	0					42	18	3	0	0	0	0.077175	1	5663	5663		118.74	12.06	1	1543600			84737	1954	59136	59228	93758	93758		70			0.0503126736834929
VKVTHQPPL	9	Unmodified	_VKVTHQPPL_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.80377197265625	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	0.91321	1	10632	10632		31.53	1.6883	1	2572600			84738	3826	59137	59229	93759	93759					0.08902039576844345
VKVTHQPPL	9	Unmodified	_VKVTHQPPL_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MSMS	OPSCC_39_ClassI_Rep-3	3	509.8042907714844	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.069	1	83.095	82.595	83.595	0.026558								0	0	0	0.5792	1	10303	10303		42.396	2.338	1				84739	3826	59137	59229	93760	93760					0.08902039576844345
VKVTHQPPL	9	Unmodified	_VKVTHQPPL_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.80267333984375	2	509.805834	1017.59712	-0.090625	-4.6201E-05	-3.144	-0.0016028	-3.2346	-0.001649	509.8043774925809	88.366	1.288	88.235	87.993	89.281	-0.13135					62	30	3	0	0	0	0.85329	1	10795	10795		35.618	6.4687	1	423260			84740	3826	59137	59229	93761	93761					0.08902039576844345
VKVVAAEL	8	Unmodified	_VKVVAAEL_					0	0	0			REV__ENSG00000096088|ENST00000373025|PGC	REV__ENSG00000096088|ENST00000373025|PGC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.76141357421875	2	414.763104	827.511654	0.17372	7.2053E-05	-3.8235	-0.0015859	-3.6498	-0.0015138	414.76147745809476	87.954	2.2305	87.817	87.304	89.534	-0.13613					149	53	5	0	0	0	1.0338	1	10775	10775		31.955	2.8053	1	32442000	+		84741	20982	59138	59230	93762	93762					0.09099874391165486
VKVVAWAAP	9	Unmodified	_VKVVAWAAP_					0	0	0		ENST00000371521.8_3_9:140111106-140111352:+|nuORF	ENST00000371521.8_3_9:140111106-140111352:+|nuORF	ENST00000371521.8_3_9:140111106-140111352:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.7837829589844	2	470.78437	939.554188	-0.74324	-0.0003499	0.72432	0.000341	-0.018919	-8.9066E-06	470.78457770753676	46.722	1.9491	46.528	46.165	48.114	-0.19387					124	53	4	0	0	0	0.72875	1	4543	4543		44.117	3.5442	1	13054000			84742	13001	59139	59231	93763	93763					0.08199269519400332
VKVVLFSIP	9	Unmodified	_VKVVLFSIP_					0	0	0			REV__ENSG00000120322|ENST00000239444|PCDHB8	REV__ENSG00000120322|ENST00000239444|PCDHB8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.29315185546875	2	501.323328	1000.6321	-0.28437	-0.00014256	0.35626	0.0001786	0.071892	3.6041E-05	501.3233204182814	73.544	1.3163	73.553	73.29	74.607	0.0096512					39	31	2	0	0	0	0.024495	1	8972	8972		19.997	1.6724	1	1698400	+		84743	22524	59140	59232	93764	93764					0.13181282384800852
VKVVMLNIS	9	Oxidation (M)	_VKVVM(Oxidation (M))LNIS_		VKVVM(1)LNIS		VKVVM(41)LNIS	0	0	1			REV__ENSG00000134917|ENST00000257359|ADAMTS8	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.80377197265625	2	509.801903	1017.58925	0.28849	0.00014708	3.1095	0.0015852	3.398	0.0017323	509.803454894187	85.43	3.0929	85.293	84.238	87.331	-0.13753					191	72	4	0	0	0	0.77768	1	10315	10315		40.778	6.6056	1	3441300	+		84744	23497	59141	59233	93765	93765		698			0.08116144265056846
VKVVVGVAR	9	Unmodified	_VKVVVGVAR_					0	0	0		ENSG00000118482|ENST00000262043|PHF3;nc|ENSG00000118482|Q92576-2|PHF3	ENSG00000118482|ENST00000262043|PHF3	ENSG00000118482|ENST00000262043|PHF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	463.8100891113281	2	463.810919	925.607286	-0.43953	-0.00020386	-0.84098	-0.00039006	-1.2805	-0.00059391	463.81039039633123	38.84	0.89667	38.741	38.514	39.411	-0.098751					59	24	4	0	0	0	0.6504	1	3281	3281		49.442	1.5259	1	2528000			84745	3684	59142	59234	93766	93766					0.14150647302085417
VKVYRVGSSP	10	Unmodified	_VKVYRVGSSP_					0	0	0			REV__ENST00000559934.5_1_15:78833043-78833268:+|nuORF	REV__ENST00000559934.5_1_15:78833043-78833268:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2944946289062	2	546.314023	1090.61349	-0.88061	-0.00048109	1.2407	0.0006778	0.36007	0.00019671	546.3147005611661	57.408	0.60479	57.241	57.001	57.606	-0.1672					29	15	3	0	0	0	0.03519	1	6282	6282		30.318	0	1	450230	+		84746	35129	59143	59235	93767	93767					0.07181120742961866
VKVYRVGSSP	10	Unmodified	_VKVYRVGSSP_					0	0	0			REV__ENST00000559934.5_1_15:78833043-78833268:+|nuORF	REV__ENST00000559934.5_1_15:78833043-78833268:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.2943115234375	2	546.314023	1090.61349	-0.946	-0.00051681	1.1163	0.00060986	0.17033	9.3052E-05	546.314490754197	57.528	0.59766	57.294	57.026	57.624	-0.23363					27	15	2	0	0	0	0.03519	1	6281	6281		28.081	0	1	535670	+		84747	35129	59143	59235	93768	93768					0.07181120742961866
VKWCFVPS	8	Unmodified	_VKWCFVPS_					0	0	0			REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10	REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.3109436035156	2	483.249306	964.484059	-0.39756	-0.00019212	-1.9772	-0.00095546	-2.3747	-0.0011476	483.24798765724165	66.956	0.50049	66.98	66.769	67.27	0.023903					24	11	3	0	0	0	0.027866	1	7934	7934		40.573	17.53	1	138410	+		84748	27049	59144	59236	93769	93769					0.0003964785930747894
VKWEDLNL	8	Unmodified	_VKWEDLNL_					0	0	0		ENST00000262419.10_2_17:44248905-44248953:-|nuORF	ENST00000262419.10_2_17:44248905-44248953:-|nuORF	ENST00000262419.10_2_17:44248905-44248953:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7723083496094	2	508.7742	1015.53385	-0.20394	-0.00010376	-3.9089	-0.0019887	-4.1128	-0.0020925	508.7721394772849	51.876	1.065	51.876	51.286	52.351	0					61	29	4	0	0	0	0.6536	2	5525	5525;5541		71.296	4.8664	1	4342400			84749	11501	59145	59237	93770;93771	93770					0.02670054068948957
VKWEDLNL	8	Unmodified	_VKWEDLNL_					0	0	0		ENST00000262419.10_2_17:44248905-44248953:-|nuORF	ENST00000262419.10_2_17:44248905-44248953:-|nuORF	ENST00000262419.10_2_17:44248905-44248953:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7723083496094	2	508.7742	1015.53385	-1.083	-0.00055101	-3.1202	-0.0015875	-4.2032	-0.0021385	508.7725080259925	51.711	0.89981	51.798	51.375	52.275	0.087006					61	24	6	0	0	0	0.53523	2	5431	5431;5442		82.305	7.2617	1	3959300			84750	11501	59145	59237	93772;93773	93772					0.02670054068948957
VKWKKGPK	8	Unmodified	_VKWKKGPK_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.8117370605469	2	485.813462	969.612371	-0.098117	-4.7666E-05	-3.9971	-0.0019418	-4.0952	-0.0019895	485.8113535059715	42.147	0.89096	42.024	41.752	42.643	-0.12299					60	23	4	0	0	0	0.99042	1	3793	3793		38.806	5.2906	1	2102000	+		84751	28019	59146	59238	93774	93774					0.12634951164704944
VKWKKGPK	8	Unmodified	_VKWKKGPK_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.81158447265625	2	485.813462	969.612371	-0.42027	-0.00020417	-3.6327	-0.0017648	-4.053	-0.001969	485.8115393994058	42.319	0.80231	42.087	41.803	42.605	-0.23186					55	21	4	0	0	0	0.94517	1	3804	3804		45.952	5.1738	1	2536700	+		84752	28019	59146	59238	93775	93775					0.12634951164704944
VKWMSKLW	8	Unmodified	_VKWMSKLW_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2642822265625	2	539.29933	1076.58411	-0.81524	-0.00043966	2.1631	0.0011666	1.3479	0.00072692	539.3003812549316	68.904	0.94209	68.674	68.398	69.34	-0.23048					36	22	3	0	0	0	0.027866	1	8060	8060		63.306	8.53	1	629990			84753	1596	59147	59239	93776	93776					0.04887885193102193
VKWMSKLW	8	Unmodified	_VKWMSKLW_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.29933	1076.58411	-1.199	-0.00064663	2.5586	0.0013799	1.3596	0.00073322	539.3005698609855	68.999	0.53508	68.737	68.466	69.001	-0.26165	0.024178	0.00070282	NaN	63.306	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511430			84754	1596	59147	59239							0.04887885193102193
VKWMSKLW	8	Unmodified	_VKWMSKLW_					0	0	0		ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	ENSG00000077063|ENST00000160373|CTTNBP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.29933	1076.58411	-0.021663	-1.1683E-05	1.2554	0.00067701	1.2337	0.00066533	539.2998252428797	68.971	0.48813	68.728	68.47	68.958	-0.24277	0.014962	-0.00070287	NaN	63.306	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	533190			84755	1596	59147	59239							0.04887885193102193
VKWTSLKL	8	Unmodified	_VKWTSLKL_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.24237060546875	2	487.805303	973.596052	-1.6275	-0.00079391	1.7394	0.00084848	0.11186	5.4566E-05	487.8059637979026	60.642	0.60262	60.721	60.536	61.139	0.078888					27	15	3	0	0	0	0.027866	1	6935	6935		65.803	33.848	1	452670	+		84756	23683	59148	59240	93777	93777					0.10819825207954636
VKWTSLKL	8	Unmodified	_VKWTSLKL_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.805303	973.596052	-0.85768	-0.00041838	0.74703	0.0003644	-0.11065	-5.3977E-05	487.8054809859516	60.714	0.5569	60.714	60.401	60.958	0	0.0099212	0.00013717	NaN	65.803	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527500	+		84757	23683	59148	59240							0.10819825207954636
VKWTSLKL	8	Unmodified	_VKWTSLKL_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	487.805303	973.596052	-0.42741	-0.00020849	0.3563	0.0001738	-0.071107	-3.4686E-05	487.8052897407082	60.922	0.67006	60.716	60.421	61.091	-0.20599	0.011638	-0.00024403	NaN	65.803	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	488210	+		84758	23683	59148	59240							0.10819825207954636
VKWTSLKL	8	Unmodified	_VKWTSLKL_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	487.805303	973.596052	-0.87973	-0.00042913	0.56417	0.00027521	-0.31556	-0.00015393	487.8054089160498	60.765	0.75981	60.589	60.362	61.122	-0.1761	-0.11496	-4.1233E-05	NaN	65.803	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508550	+		84759	23683	59148	59240							0.10819825207954636
VKWTSLKL	8	Unmodified	_VKWTSLKL_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.805303	973.596052	-0.56433	-0.00027528	0.31708	0.00015467	-0.24725	-0.00012061	487.80529414890594	60.995	0.67446	60.741	60.504	61.179	-0.25374	0.036715	-0.0002823	NaN	65.803	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498110	+		84760	23683	59148	59240							0.10819825207954636
VKYGIYLKKDI	11	Unmodified	_VKYGIYLKKDI_					0	0	0			REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|42|1|sense	REV__L1PB3_dup2938|chr14:24649260-24653347:+|1.7539165250723294|0.0778290538073656|4.49|510.0|42|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	447.27374267578125	3	447.270984	1338.79112	0.79111	0.00035384	3.6625	0.0016381	4.4536	0.001992	447.27252393560246	106.17	0.60676	106.17	105.93	106.54	0					88	23	5	0	0	0	1.0674	1	13638	13638		20.315	1.784	1	2219100	+		84761	36295	59149	59241	93778	93778					0.1352795122227235
VKYGPDPVE	9	Unmodified	_VKYGPDPVE_					0	0	0		nc|ENSG00000273777|Q6UY09-4|CEACAM20;nc|ENSG00000273777|Q6UY09-3|CEACAM20;nc|ENSG00000273777|Q6UY09-2|CEACAM20;nc|ENSG00000273777|Q6UY09-5|CEACAM20;ENSG00000273777|ENST00000614924|CEACAM20	nc|ENSG00000273777|Q6UY09-4|CEACAM20	nc|ENSG00000273777|Q6UY09-4|CEACAM20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78375244140625	2	502.258382	1002.50221	0.44988	0.00022596	2.7378	0.0013751	3.1877	0.0016011	502.25935201614317	72.037	0.18673	72.037	71.904	72.091	0					5	4	2	0	0	0	0.024487	1	8758	8758		31.955	11.958	1	124890			84762	11023	59150	59242	93779	93779					0.0010606131498889226
VKYHLGAR	8	Unmodified	_VKYHLGAR_					0	0	0			REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	REV__nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2520751953125	2	472.277244	942.539935	-0.021057	-9.9449E-06	0.90591	0.00042784	0.88485	0.0004179	472.27755683186786	24.285	1.0769	24.11	23.656	24.733	-0.17484					34	24	2	0	0	0	0.027866	1	1007	1007		24.203	0	1	569410	+		84763	37043	59151	59243	93780	93780					0.06636617091135122
VKYIQPMQK	9	Unmodified	_VKYIQPMQK_					0	0	0		ENSG00000171812|ENST00000397799|COL8A2	ENSG00000171812|ENST00000397799|COL8A2	ENSG00000171812|ENST00000397799|COL8A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.8212890625	2	567.820627	1133.6267	-0.41841	-0.00023758	-0.94522	-0.00053671	-1.3636	-0.0007743	567.8199710770728	68.259	0.38062	68.278	68.118	68.499	0.018913					13	9	3	0	0	0	0.024457	1	8085	8085		45.952	18.07	1	59783			84764	8196	59152	59244	93781	93781					0.06523235530676175
VKYISNEEV	9	Unmodified	_VKYISNEEV_					0	0	0			REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.8160400390625	2	540.782222	1079.54989	-0.696	-0.00037639	-0.32231	-0.0001743	-1.0183	-0.00055069	540.7817855049174	45.639	0.74338	45.639	45.278	46.021	0					48	21	3	0	0	0	0.023655	1	4432	4432		79.713	20.931	1	786570	+		84765	31134	59153	59245	93782	93782					0.013297155152031337
VKYISNEEV	9	Unmodified	_VKYISNEEV_					0	0	0			REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.815673828125	2	540.782222	1079.54989	-0.31379	-0.00016969	-0.98348	-0.00053185	-1.2973	-0.00070154	540.7812446099166	45.755	0.49968	45.658	45.461	45.961	-0.096653					21	13	2	0	0	0	0.024418	1	4342	4342		45.972	3.5761	1	424040	+		84766	31134	59153	59245	93783	93783					0.013297155152031337
VKYISNEEV	9	Unmodified	_VKYISNEEV_					0	0	0			REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.8167724609375	2	540.782222	1079.54989	-1.6799	-0.00090846	-3.7872	-0.002048	-5.4671	-0.0029565	540.7804541051712	45.898	0.61959	45.696	45.425	46.044	-0.20226					27	16	2	0	0	0	0.024466	1	4360	4360		24.519	0	1	183160	+		84767	31134	59153	59245	93784	93784					0.013297155152031337
VKYISNEEV	9	Unmodified	_VKYISNEEV_					0	0	0			REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	REV__ENST00000370654.5_1_1:84962027-84963169:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	540.782222	1079.54989	-0.88093	-0.00047639	0.02346	1.2687E-05	-0.85747	-0.0004637	540.7820583506943	45.625	1.0868	45.669	45.214	46.301	0.043877	0.0035888	0.00042505	NaN	79.713	72	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2271600	+		84768	31134	59153	59245							0.013297155152031337
VKYKKLRL	8	Unmodified	_VKYKKLRL_					0	0	0			REV__CON__P02662	REV__CON__P02662	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.3138427734375	2	524.355494	1046.69644	-0.13676	-7.1713E-05	2.8674	0.0015035	2.7306	0.0014318	524.3566108850525	73.169	0.10989	73.179	73.107	73.217	0.0096512					4	2	2	0	0	0	0.027866	1	8840	8840		4.3163	0	1	54100	+	+	84769	19538	59154	59246	93785	93785					0.17495482261597317
VKYKVALKA	9	Unmodified	_VKYKVALKA_					0	0	0			REV__SGPL1|p.I310V|1|0.22|ENSG00000166224|chr10:70871855-70871855|A/G|missense_variant	REV__SGPL1|p.I310V|1|0.22|ENSG00000166224|chr10:70871855-70871855|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7833251953125	2	510.334227	1018.6539	-0.23998	-0.00012247	0.38728	0.00019764	0.1473	7.5171E-05	510.8373939097733	50.83	2.5044	50.681	49.819	52.324	-0.14916					127	71	3	0	0	0	0.024541	1	5180	5180		31.955	0	1	382240	+		84770	37483	59155	59247	93786	93786					0.14532087133352434
VKYKVALKA	9	Unmodified	_VKYKVALKA_					0	0	0			REV__SGPL1|p.I310V|1|0.22|ENSG00000166224|chr10:70871855-70871855|A/G|missense_variant	REV__SGPL1|p.I310V|1|0.22|ENSG00000166224|chr10:70871855-70871855|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7833251953125	2	510.334227	1018.6539	-0.49457	-0.00025239	0.86564	0.00044177	0.37107	0.00018937	510.83757638175234	50.425	2.9659	50.506	49.661	52.627	0.080994					147	82	3	0	0	0	0.024506	1	5080	5080		30.504	2.6214	1	286070	+		84771	37483	59155	59247	93787	93787					0.14532087133352434
VKYLECLALT	10	Unmodified	_VKYLECLALT_					0	0	0		ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENST00000419413.1_1_X:136523419-136523611:-|nuORF	ENST00000419413.1_1_X:136523419-136523611:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	575.8435668945312	2	576.820292	1151.62603	-0.93258	-0.00053793	-1.7583	-0.0010142	-2.6909	-0.0015522	576.8192345089683	90.238	0.44141	90.083	89.864	90.305	-0.1552					19	10	2	0	0	0	0.03519	1	11061	11061		19.104	4.2386	1	170450			84772	13953	59156	59248	93788	93788					0.05628396090969545
VKYLKPQP	8	Unmodified	_VKYLKPQP_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.3107604980469	2	486.797478	971.580402	-0.19402	-9.4447E-05	0.43354	0.00021105	0.23953	0.0001166	486.7976635692009	75.228	0.46283	74.97	74.737	75.2	-0.25866					21	10	3	0	0	0	0.027866	1	8869	8869		20.482	0	1	210760	+		84773	27144	59157	59249	93789	93789					0.09347538690894908
VKYPDSALG	9	Unmodified	_VKYPDSALG_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.2405090332031	2	475.2531	948.491647	-0.063236	-3.0053E-05	0.12343	5.8659E-05	0.06019	2.8606E-05	475.2544777997083	37.491	0.66897	37.427	37.127	37.796	-0.063385					47	18	4	0	0	0	0.024523	1	2999	2999		29.15	7.1897	1	493270			84774	7853	59158	59250	93790	93790					0.015340786605634094
VKYVRQSLKKT	11	Unmodified	_VKYVRQSLKKT_					0	0	0			REV__ENSG00000214946|ENST00000437605|TBC1D26	REV__ENSG00000214946|ENST00000437605|TBC1D26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.74310302734375	3	450.613633	1348.81907	-0.059907	-2.6995E-05	2.184	0.00098414	2.1241	0.00095714	450.6145411284846	27.163	0.45277	27.163	26.908	27.361	0					32	11	4	0	0	0	0.024846	1	1479	1479		2.534	0	1	419980	+		84775	28793	59159	59251	93791	93791					0.15861274202347886
VKYYNLPI	8	Unmodified	_VKYYNLPI_					0	0	0		ENST00000378572.7_1_10:13672661-13672748:+|nuORF	ENST00000378572.7_1_10:13672661-13672748:+|nuORF	ENST00000378572.7_1_10:13672661-13672748:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3236999511719	2	505.289485	1008.56442	-0.44972	-0.00022724	1.1931	0.00060285	0.74335	0.00037561	505.2881540703286	79.557	0.25416	79.557	79.447	79.701	0					7	5	2	0	0	0	0.027866	1	9860	9860		42.474	0	1	30874			84776	13243	59160	59252	93792	93792					0.060478324539985806
VLAAGKVAEV	10	Unmodified	_VLAAGKVAEV_					0	0	0			REV__ENSG00000087074|ENST00000200453|PPP1R15A	REV__ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.7919616699219	2	478.792392	955.570232	-0.25316	-0.00012121	0.56316	0.00026963	0.31	0.00014842	478.79248360850306	45.925	0.54113	45.664	45.35	45.891	-0.26118					41	14	4	0	0	0	0.37169	2	4379	4379;4392		101.6	16.241	1	2419600	+		84777	20782	59161	59253	93793;93794	93793					0.09066930965650499
VLAAGVVAVL	10	Unmodified	_VLAAGVVAVL_					0	0	0			REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	456.7427978515625	2	456.299853	910.585153	0.068313	3.1171E-05	2.6618	0.0012146	2.7301	0.0012457	456.3008933876462	45.842	1.5819	45.745	44.713	46.295	-0.096649					65	43	3	0	0	0	0.03519	1	4370	4370		26.796	0	1	410660	+		84778	28071	59162	59254	93795	93795					0.1262842283365444
VLAARVLL	8	Unmodified	_VLAARVLL_					0	0	0			REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	427.794677734375	2	427.794738	853.574923	1.6659	0.00071266	-1.4164	-0.00060593	0.24949	0.00010673	427.7940030346814	63.974	0.84826	64.02	63.794	64.642	0.045502					44	22	3	0	0	0	0.95417	1	7443	7443		44.531	3.9584	1	1210200	+		84779	35112	59163	59255	93796	93796					0.14227859899096984
VLAARVLL	8	Unmodified	_VLAARVLL_					0	0	0			REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	427.794738	853.574923	1.2409	0.00053084	-0.71265	-0.00030487	0.52823	0.00022597	427.79431203991504	63.997	0.72118	63.997	63.701	64.422	0	-0.01312	-0.00011893	NaN	44.531	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1155200	+		84780	35112	59163	59255							0.14227859899096984
VLAARVLL	8	Unmodified	_VLAARVLL_					0	0	0			REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	427.794738	853.574923	-0.22715	-9.7171E-05	0.5834	0.00024958	0.35626	0.00015241	427.79484183105103	64.276	0.77437	64.014	63.719	64.493	-0.2626	0.0034714	0.00098996	NaN	44.531	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1351100	+		84781	35112	59163	59255							0.14227859899096984
VLAARVLL	8	Unmodified	_VLAARVLL_					0	0	0			REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	REV__ENST00000559126.5_1_15:85197121-85197442:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	427.794738	853.574923	1.6659	0.00071266	-1.4164	-0.00060593	0.24949	0.00010673	427.7940030346814	63.974	0.84826	64.02	63.794	64.642	0.045502	0.0096488	-0.00072104	NaN	44.531	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1210200	+		84782	35112	59163	59255							0.14227859899096984
VLACMMALHPK	11	Unmodified	_VLACMMALHPK_					0	0	0			REV__ENSG00000076604|ENST00000262395|TRAF4	REV__ENSG00000076604|ENST00000262395|TRAF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	405.2353820800781	3	405.213319	1212.61813	0.68977	0.0002795	1.1473	0.00046489	1.837	0.00074439	405.2137529970396	23.888	0.38608	23.888	23.737	24.123	0					13	8	2	0	0	0	0.024782	1	967	967		6.001	0	1	66712	+		84783	20570	59164	59256	93797	93797					0.02032222298180386
VLADALKSI	9	Unmodified	_VLADALKSI_					0	0	0		ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.28662109375	2	465.286943	928.559333	-0.34155	-0.00015892	0.60226	0.00028022	0.2607	0.0001213	465.28709546667505	61.587	0.53749	61.587	61.295	61.832	0					40	13	4	0	0	0	0.041068	4	7138	7126;7138;7150;7162		132.76	36.943	1	5072600			84784	4794	59165	59257	93798;93799;93800;93801	93799					0.09219528591370363
VLADALKSI	9	Unmodified	_VLADALKSI_					0	0	0		ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2868957519531	2	465.286943	928.559333	0.39616	0.00018433	-0.12517	-5.8242E-05	0.27098	0.00012609	465.286769990306	61.858	0.50249	61.631	61.336	61.839	-0.22663					37	12	4	0	0	0	0.015752	3	7139	7128;7139;7151		158.07	39.332	1	4709400			84785	4794	59165	59257	93802;93803;93804	93803					0.09219528591370363
VLADALKSI	9	Unmodified	_VLADALKSI_					0	0	0		ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2870788574219	2	465.286943	928.559333	0.64883	0.00030189	-0.42624	-0.00019832	0.22259	0.00010357	465.2866172197636	61.511	0.46472	61.582	61.315	61.779	0.071129					39	11	4	0	0	0	0.025498	3	7032	7032;7043;7054		145.16	38.148	1	4736100			84786	4794	59165	59257	93805;93806;93807	93805					0.09219528591370363
VLADALKSI	9	Unmodified	_VLADALKSI_					0	0	0		ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	465.286943	928.559333	-0.029001	-1.3494E-05	0.51497	0.00023961	0.48596	0.00022611	465.2870420104321	61.779	0.55725	61.565	61.375	61.932	-0.21375	-0.040238	0.00035919	NaN	158.07	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406250			84787	4794	59165	59257							0.09219528591370363
VLADALKSI	9	Unmodified	_VLADALKSI_					0	0	0		ENST00000573554.1_1_16:18800267-18800435:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENST00000573554.1_1_16:18800267-18800435:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.286943	928.559333	-0.19634	-9.1355E-05	0.54773	0.00025485	0.35139	0.0001635	465.28707714926315	61.917	0.71345	61.66	61.383	62.097	-0.25725	0.054953	0.00038967	NaN	158.07	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307040			84788	4794	59165	59257							0.09219528591370363
VLADQVWTL	9	Unmodified	_VLADQVWTL_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.7899169921875	2	522.78985	1043.56515	-0.78655	-0.0004112	0.74719	0.00039062	-0.039363	-2.0578E-05	522.7901349707964	84.233	1.0095	84.233	83.866	84.876	0					60	23	4	0	0	0	0.082191	3	10539	10529;10539;10551		116.9	41.333	1	2932800			84789	3339	59166	59258	93808;93809;93810	93809					0.04510627103036313
VLADQVWTL	9	Unmodified	_VLADQVWTL_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.7894287109375	2	522.78985	1043.56515	-1.0169	-0.00053165	0.91394	0.0004778	-0.103	-5.3849E-05	522.7902280256903	84.225	1.0571	84.153	83.743	84.8	-0.072769					61	22	4	0	0	0	0.1158	2	10510	10499;10510		107.01	29.657	1	2774300			84790	3339	59166	59258	93811;93812	93812					0.04510627103036313
VLADQVWTL	9	Unmodified	_VLADQVWTL_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7897338867188	2	522.78985	1043.56515	-0.62694	-0.00032776	0.65336	0.00034157	0.02642	1.3812E-05	522.7901053210006	84.154	1.227	84.18	83.727	84.954	0.02655					74	28	4	0	0	0	0.14024	3	10451	10439;10451;10465		101.6	28.988	1	2814400			84791	3339	59166	59258	93813;93814;93815	93814					0.04510627103036313
VLADQVWTL	9	Unmodified	_VLADQVWTL_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7923583984375	2	522.78985	1043.56515	0.31814	0.00016632	-0.011429	-5.9749E-06	0.30671	0.00016035	522.7897224695572	84.26	1.1089	84.057	83.65	84.759	-0.20328					66	25	4	0	0	0	0.01452	3	10161	10161;10166;10178		186.09	89.899	1	2859700			84792	3339	59166	59258	93816;93817;93818	93816					0.04510627103036313
VLADQVWTL	9	Unmodified	_VLADQVWTL_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7893676757812	2	522.78985	1043.56515	0.79084	0.00041344	-0.87738	-0.00045869	-0.086546	-4.5246E-05	522.7892500947819	84.186	1.1469	84.028	83.671	84.818	-0.15869					64	26	4	0	0	0	0.015901	3	10179	10168;10179;10192		157.33	71.184	1	2861300			84793	3339	59166	59258	93819;93820;93821	93820					0.04510627103036313
VLADQVWTL	9	Unmodified	_VLADQVWTL_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7894287109375	2	522.78985	1043.56515	0.50137	0.00026211	-0.44731	-0.00023385	0.054062	2.8263E-05	522.7894929779558	84.182	1.0752	84.044	83.672	84.747	-0.13789					69	24	4	0	0	0	0.027092	3	10165	10152;10165;10177		143.89	61.582	1	2601700			84794	3339	59166	59258	93822;93823;93824	93823					0.04510627103036313
VLADTSFNY	9	Unmodified	_VLADTSFNY_					0	0	0		ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2|C10orf67	ENSG00000179133|ENST00000636213|C10orf67	ENSG00000179133|ENST00000636213|C10orf67	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7821044921875	2	515.248015	1028.48148	0.15135	7.7985E-05	-1.1117	-0.00057282	-0.96038	-0.00049483	515.2469196361376	71.523	0.90012	71.261	70.779	71.679	-0.26199					31	21	2	0	0	0	0.02435	1	8375	8375		60.972	9.6365	1	331510			84795	8874	59167	59259	93825	93825					-0.03162529064638875
VLAEKLAAI	9	Unmodified	_VLAEKLAAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.29632568359375	2	464.29731	926.580068	-0.40728	-0.0001891	-0.48382	-0.00022464	-0.8911	-0.00041374	464.2967012948291	56.442	0.82912	56.442	56.174	57.003	0					48	23	4	0	0	0	0.12914	1	6297	6297		104.06	13.687	1	3600900			84796	18548	59168	59260	93826	93826					0.1138411897103424
VLAEKLAAI	9	Unmodified	_VLAEKLAAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2959289550781	2	464.29731	926.580068	-0.56623	-0.0002629	-0.17185	-7.9789E-05	-0.73808	-0.00034269	464.2969062046417	56.57	0.95722	56.406	56.165	57.122	-0.16432					57	26	4	0	0	0	0.22902	1	6274	6274		85.161	5.4482	1	3276400			84797	18548	59168	59260	93827	93827					0.1138411897103424
VLAEKLAAI	9	Unmodified	_VLAEKLAAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2967834472656	2	464.29731	926.580068	0.12842	5.9623E-05	-0.85705	-0.00039793	-0.72864	-0.0003383	464.29656844267146	56.289	0.84428	56.387	56.136	56.981	0.097893					53	23	3	0	0	0	0.17845	2	6192	6182;6192		93.143	6.3214	1	3230200			84798	18548	59168	59260	93828;93829	93829					0.1138411897103424
VLAEKLAAI	9	Unmodified	_VLAEKLAAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	464.29731	926.580068	-0.13976	-6.4892E-05	0.20464	9.5014E-05	0.064877	3.0122E-05	464.2972379286545	56.507	0.67508	56.34	56.001	56.676	-0.1672	-0.056601	0.00027602	NaN	104.06	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1351200			84799	18548	59168	59260							0.1138411897103424
VLAEKLAAI	9	Unmodified	_VLAEKLAAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	464.29731	926.580068	0.27942	0.00012973	-0.23794	-0.00011047	0.041478	1.9258E-05	464.2970262104109	56.624	0.69102	56.422	56.092	56.783	-0.20209	0.02547	-0.00013495	NaN	104.06	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1393900			84800	18548	59168	59260							0.1138411897103424
VLAEKLAAI	9	Unmodified	_VLAEKLAAI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	464.29731	926.580068	0.16106	7.4781E-05	-0.056907	-2.6422E-05	0.10416	4.8359E-05	464.29710265481987	56.607	0.77396	56.382	56.149	56.923	-0.2248	-0.014698	3.3152E-05	NaN	104.06	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1139300			84801	18548	59168	59260							0.1138411897103424
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.Q355Tfs*12|1|0.51|ENSG00000005339|chr16:3793539-3793540|-/T|frameshift_variant;CREBBP-ATG10|1|fusion;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.28155517578125	2	487.281857	972.549162	-0.96695	-0.00047118	1.1622	0.00056631	0.19523	9.513E-05	487.28231458336796	65.071	1.337	65.071	64.538	65.875	0					97	36	5	0	0	0	0.013094	2	7686	7686;7705		171.38	50.764	1	5696100			84802	587;585	59169	59261	93830;93831	93830					0.0617892086613665
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.Q355Tfs*12|1|0.51|ENSG00000005339|chr16:3793539-3793540|-/T|frameshift_variant;CREBBP-ATG10|1|fusion;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.28192138671875	2	487.281857	972.549162	-0.90253	-0.00043979	1.1128	0.00054225	0.21027	0.00010246	487.28227414959105	65.391	1.4671	65.118	64.675	66.142	-0.27282					95	39	4	0	0	0	0.013094	3	7706	7694;7706;7719		171.38	60.652	1	4986200			84803	587;585	59169	59261	93832;93833;93834	93833					0.0617892086613665
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.Q355Tfs*12|1|0.51|ENSG00000005339|chr16:3793539-3793540|-/T|frameshift_variant;CREBBP-ATG10|1|fusion;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2815856933594	2	487.281857	972.549162	-0.74104	-0.0003611	0.85039	0.00041438	0.10935	5.3283E-05	487.2822155694386	65.06	1.5317	65.098	64.634	66.166	0.037384					93	41	5	0	0	0	0.01452	1	7617	7617		186.09	52.276	1	5340800			84804	587;585	59169	59261	93835	93835					0.0617892086613665
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.Q355Tfs*12|1|0.51|ENSG00000005339|chr16:3793539-3793540|-/T|frameshift_variant;CREBBP-ATG10|1|fusion;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.28173828125	2	487.281857	972.549162	-0.47203	-0.00023001	0.45607	0.00022223	-0.015964	-7.779E-06	487.28191425591996	65.471	1.3032	65.229	64.883	66.186	-0.24145					88	31	5	0	0	0	0.013094	4	7484	7460;7472;7484;7498		217.64	91.828	1	3350100			84805	587;585	59169	59261	93836;93837;93838;93839	93838					0.0617892086613665
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.Q355Tfs*12|1|0.51|ENSG00000005339|chr16:3793539-3793540|-/T|frameshift_variant;CREBBP-ATG10|1|fusion;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.28179931640625	2	487.281857	972.549162	-1.2868	-0.00062703	1.1895	0.00057963	-0.097281	-4.7403E-05	487.28229479367207	65.424	1.026	65.211	64.93	65.956	-0.21327					80	24	5	0	0	0	0.013468	3	7469	7469;7481;7493		225.24	82.13	1	3620000			84806	587;585	59169	59261	93840;93841;93842	93840					0.0617892086613665
VLAETLTQV	9	Unmodified	_VLAETLTQV_					0	0	0		CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;CREBBP|p.Q355Tfs*12|1|0.51|ENSG00000005339|chr16:3793539-3793540|-/T|frameshift_variant;CREBBP-ATG10|1|fusion;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant;CREBBP-TRAP1|1|fusion	CREBBP|p.L1346Ffs*8|1|0.27|ENSG00000005339|chr16:3740494-3740495|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.28173828125	2	487.281857	972.549162	-0.24727	-0.00012049	0.23595	0.00011497	-0.011319	-5.5153E-06	487.28180162559914	65.457	1.1795	65.205	64.864	66.044	-0.25112					71	28	4	0	0	0	0.01452	4	7451	7451;7461;7473;7487		190.52	75.059	1	3703700			84807	587;585	59169	59261	93843;93844;93845;93846	93843					0.0617892086613665
VLAFIHTF	8	Unmodified	_VLAFIHTF_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-2|GARNL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7503662109375	2	474.271096	946.527639	0.062207	2.9503E-05	-0.70903	-0.00033627	-0.64683	-0.00030677	474.2707188560831	27.992	0.93769	27.988	27.436	28.374	-0.0042019					38	23	2	0	0	0	0.027866	1	1631	1631		8.8223	0	1	140730	+		84808	23702	59170	59262	93847	93847					0.05223580628091895
VLAFKATHI	9	Unmodified	_VLAFKATHI_					0	0	0			REV__nc|ENSG00000143252|Q99643-5|SDHC	REV__nc|ENSG00000143252|Q99643-5|SDHC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.313232421875	2	500.302927	998.591301	-0.12807	-6.4076E-05	-3.0203	-0.0015111	-3.1484	-0.0015752	500.3015572047978	76.156	0.23129	75.897	75.784	76.016	-0.25866					8	5	2	0	0	0	0.024436	1	9030	9030		30.504	0	1	212790	+		84809	24217	59171	59263	93848	93848					0.09194941065175044
VLAGFLIKTL	10	Unmodified	_VLAGFLIKTL_					0	0	0			REV__nc|ENSG00000054793|O75110-2|ATP9A	REV__nc|ENSG00000054793|O75110-2|ATP9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7966918945312	2	537.84971	1073.68487	-0.59109	-0.00031792	-0.93989	-0.00050552	-1.531	-0.00082344	537.8489421865513	77.995	0.40977	77.995	77.752	78.162	0					14	9	2	0	0	0	0.03519	1	9636	9636		58.782	0	1	75781	+		84810	20193	59172	59264	93849	93849					0.1509724044763061
VLAGPSVLL	9	Unmodified	_VLAGPSVLL_					0	0	0			REV__ENSG00000164050|ENST00000296440|PLXNB1	REV__ENSG00000164050|ENST00000296440|PLXNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7795104980469	2	434.778754	867.542954	0.47497	0.00020651	2.855	0.0012413	3.33	0.0014478	434.7798589866304	47.13	1.0835	46.977	46.586	47.669	-0.15301					89	29	4	0	0	0	0.52323	1	4703	4703		57.811	5.5121	1	2312100	+		84811	25678	59173	59265	93850	93850					0.10388447425293634
VLAGPSVLL	9	Unmodified	_VLAGPSVLL_					0	0	0			REV__ENSG00000164050|ENST00000296440|PLXNB1	REV__ENSG00000164050|ENST00000296440|PLXNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7801513671875	2	434.778754	867.542954	-0.21804	-9.48E-05	3.4579	0.0015034	3.2399	0.0014086	434.7801379909437	46.891	1.0545	46.95	46.623	47.677	0.059097					87	29	4	0	0	0	0.80658	1	4614	4614		38.806	3.6054	1	2944300	+		84812	25678	59173	59265	93851	93851					0.10388447425293634
VLAGRAPRRVD	11	Unmodified	_VLAGRAPRRVD_					0	0	0		ENST00000534797.5_1_11:503263-503554:-|nuORF	ENST00000534797.5_1_11:503263-503554:-|nuORF	ENST00000534797.5_1_11:503263-503554:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	605.3600463867188	2	605.36237	1208.71019	-0.64469	-0.00039027	-0.47319	-0.00028645	-1.1179	-0.00067672	605.3615888791153	106.88	0.46687	106.75	106.45	106.91	-0.1238					19	15	2	0	0	0	0.98904	1	13301	13301		39.253	7.723	1	134720			84813	16337	59174	59266	93852	93852					0.11418108022735396
VLAGRAPRRVD	11	Unmodified	_VLAGRAPRRVD_					0	0	0		ENST00000534797.5_1_11:503263-503554:-|nuORF	ENST00000534797.5_1_11:503263-503554:-|nuORF	ENST00000534797.5_1_11:503263-503554:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	605.36237	1208.71019	0.38082	0.00023054	-2.137	-0.0012937	-1.7562	-0.0010631	605.3607985561961	107.01	0.28292	106.85	106.74	107.02	-0.15772	0.044605	-0.0015683	NaN	39.253	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89506			84814	16337	59174	59266							0.11418108022735396
VLAGYSRARA	10	Unmodified	_VLAGYSRARA_					0	0	0			REV__ENSG00000100156|ENST00000681075|SLC16A8	REV__ENSG00000100156|ENST00000681075|SLC16A8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.3048706054688	2	532.30399	1062.59343	-0.39696	-0.0002113	2.7336	0.0014551	2.3367	0.0012438	532.3052780156318	63.365	1.3344	63.113	62.724	64.059	-0.25141					85	35	5	0	0	0	0.64538	1	7359	7359		71.877	2.2498	1	7509400	+		84815	21058	59175	59267	93853	93853					0.064633698030093
VLAHGFLL	8	Unmodified	_VLAHGFLL_					0	0	0			REV__ENST00000298105.7_1_13:103543811-103548031:+|nuORF	REV__ENST00000298105.7_1_13:103543811-103548031:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7799377441406	2	435.265813	868.517074	0.081589	3.5513E-05	0.011697	5.0911E-06	0.093285	4.0604E-05	435.26560157674845	46.597	0.82993	46.5	46.331	47.161	-0.096653					36	22	2	0	0	0	0.027866	1	4495	4495		16.705	0	1	817720	+		84816	30019	59176	59268	93854	93854					0.07755597973664408
VLAHGFLL	8	Unmodified	_VLAHGFLL_					0	0	0			REV__ENST00000298105.7_1_13:103543811-103548031:+|nuORF	REV__ENST00000298105.7_1_13:103543811-103548031:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.77947998046875	2	435.265813	868.517074	-0.068162	-2.9668E-05	0.22648	9.8577E-05	0.15831	6.8909E-05	435.26586017189095	46.716	1.0022	46.522	46.309	47.311	-0.19387					60	27	4	0	0	0	0.027866	1	4500	4500		24.504	0	1	2521900	+		84817	30019	59176	59268	93855	93855					0.07755597973664408
VLAHPNLTV	9	Unmodified	_VLAHPNLTV_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.2849426269531	2	482.284734	962.554916	1.0582	0.00051037	-1.7424	-0.00084035	-0.68419	-0.00032997	482.2839715054123	54.672	1.7378	54.466	54.087	55.825	-0.20613					114	47	4	0	0	0	0.39228	1	5783	5783		66.429	3.123	1	19378000	+		84818	28521	59177	59269	93856	93856					0.07214064168465484
VLAILGGIL	9	Unmodified	_VLAILGGIL_					0	0	0			REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7955017089844	2	434.796946	867.57934	0.051061	2.2201E-05	-2.8544	-0.0012411	-2.8034	-0.0012189	434.79561369245266	18.006	0.49628	17.799	17.614	18.11	-0.20669					15	9	2	0	0	0	0.99355	1	244	244		21.702	1.2205	1	78761	+		84819	22217	59178	59270	93857	93857					0.14025324322005872
VLAILGGIL	9	Unmodified	_VLAILGGIL_					0	0	0			REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	434.796946	867.57934	1.0989	0.00047778	-3.792	-0.0016487	-2.6931	-0.001171	434.79514137913117	17.988	0.49434	17.832	17.605	18.099	-0.15637	0.032626	0.0012923	NaN	21.702	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46611	+		84820	22217	59178	59270							0.14025324322005872
VLAILGGIL	9	Unmodified	_VLAILGGIL_					0	0	0			REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	434.796946	867.57934	0.051061	2.2201E-05	-2.8544	-0.0012411	-2.8034	-0.0012189	434.79561369245266	18.006	0.49628	17.799	17.614	18.11	-0.20669	0.00013906	0.0021076	NaN	21.702	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78761	+		84821	22217	59178	59270							0.14025324322005872
VLAILGGIL	9	Unmodified	_VLAILGGIL_					0	0	0			REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	434.796946	867.57934	4.1436	0.0018016	-6.8163	-0.0029637	-2.6727	-0.0011621	434.793903364592	18.009	0.39706	17.766	17.627	18.024	-0.24256	-0.032765	-0.0013376	NaN	21.702	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68278	+		84822	22217	59178	59270							0.14025324322005872
VLAIMRLTHL	10	Unmodified	_VLAIMRLTHL_					0	0	0			REV__ENST00000432329.6_1_2:208464230-208464308:+|nuORF	REV__ENST00000432329.6_1_2:208464230-208464308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	583.858642578125	2	583.857544	1165.70053	-0.4186	-0.0002444	2.6006	0.0015184	2.182	0.001274	583.8588726706961	96.987	1.2388	96.995	96.575	97.813	0.0089111					82	27	5	0	0	0	1.0992	1	12358	12358		32.812	2.4947	1	1557300	+		84823	32380	59179	59271	93858	93858					0.12431203693017778
VLAIMRLTHL	10	Unmodified	_VLAIMRLTHL_					0	0	0			REV__ENST00000432329.6_1_2:208464230-208464308:+|nuORF	REV__ENST00000432329.6_1_2:208464230-208464308:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.85888671875	2	583.857544	1165.70053	1.3634	0.00079603	0.85502	0.00049921	2.2184	0.0012952	583.8578996469528	97.062	1.11	97.062	96.705	97.815	-3.0518E-05					72	24	5	0	0	0	1.0142	1	12312	12312		44.117	9.9443	1	1447700	+		84824	32380	59179	59271	93859	93859					0.12431203693017778
VLAISHGMGIP	11	Unmodified	_VLAISHGMGIP_					0	0	0		ENSG00000007001|ENST00000005756|UPP2;nc|ENSG00000007001|O95045-2|UPP2	ENSG00000007001|ENST00000005756|UPP2	ENSG00000007001|ENST00000005756|UPP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.26904296875	2	547.804977	1093.5954	-0.83058	-0.00045499	-2.2626	-0.0012395	-3.0932	-0.0016945	547.8037123163471	56.028	0.8462	55.871	55.607	56.453	-0.15655					59	21	4	0	0	0	0.024738	1	6026	6026		26.693	2.1737	1	1166900			84825	805	59180	59272	93860	93860					0.05234662496582132
VLAKANLLGF	10	Unmodified	_VLAKANLLGF_					0	0	0			REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3281860351562	2	523.32386	1044.63317	0.35475	0.00018565	-0.89058	-0.00046606	-0.53583	-0.00028041	523.3234051835421	72.145	1.7182	71.864	71.281	72.999	-0.28133					127	43	5	0	0	0	0.87795	1	8789	8789		55.504	3.205	1	15725000	+		84826	26949	59181	59273	93861	93861					0.11263496753713298
VLAKATKLIN	10	Unmodified	_VLAKATKLIN_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.3311157226562	2	535.850242	1069.68593	-0.19186	-0.00010281	-0.21659	-0.00011606	-0.40845	-0.00021887	535.8500273150347	46.34	0.50691	46.243	45.999	46.506	-0.096649					21	13	2	0	0	0	0.03519	1	4499	4499		30.318	4.8675	1	651490	+		84827	26616	59182	59274	93862	93862					0.1538745481652768
VLAKATKLIN	10	Unmodified	_VLAKATKLIN_					0	0	0			REV__ENSG00000171914|ENST00000636159|TLN2	REV__ENSG00000171914|ENST00000636159|TLN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3309936523438	2	535.850242	1069.68593	-0.51134	-0.000274	-0.2224	-0.00011917	-0.73374	-0.00039317	535.8500071820603	46.584	0.52021	46.323	46.083	46.603	-0.26118					21	13	2	0	0	0	0.03519	1	4517	4517		30.318	7.2752	1	404730	+		84828	26616	59182	59274	93863	93863					0.1538745481652768
VLAKGLLV	8	Unmodified	_VLAKGLLV_					0	0	0		ZFR|p.L800V|1|0.31|ENSG00000056097|chr5:32387650-32387650|G/C|missense_variant	ZFR|p.L800V|1|0.31|ENSG00000056097|chr5:32387650-32387650|G/C|missense_variant	ZFR|p.L800V|1|0.31|ENSG00000056097|chr5:32387650-32387650|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.5791931152344	2	406.783839	811.553125	0.67356	0.00027399	3.8486	0.0015655	4.5221	0.0018395	406.7853175647937	34.482	0.33554	34.482	34.371	34.706	0					12	8	2	0	0	0	0.027866	1	2595	2595		14.664	0	1	41060			84829	38177	59183	59275	93864	93864					0.1398105515052066
VLAKRYPI	8	Unmodified	_VLAKRYPI_					0	0	0		ENST00000495550.5_1_1:197704780-197743705:-|nuORF	ENST00000495550.5_1_1:197704780-197743705:-|nuORF	ENST00000495550.5_1_1:197704780-197743705:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7696228027344	2	480.30547	958.596387	-0.77554	-0.0003725	0.92565	0.0004446	0.15011	7.21E-05	480.3057918862759	40.993	0.60729	40.763	40.589	41.196	-0.2303					24	15	2	0	0	0	0.027866	1	3600	3600		20.482	7.5226	1	224040			84830	15552	59184	59276	93865	93865					0.11543244927804608
VLALDDGTPAL	11	Unmodified	_VLALDDGTPAL_					0	0	0		DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2;DCHS2|p.F2432Sfs*12|1|0.08|ENSG00000197410|chr4:154235992-154235992|A/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	DCHS2|p.Y2860Tfs*10|1|0.21|ENSG00000197410|chr4:154234710-154234710|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.79638671875	2	542.797872	1083.58119	0.017495	9.496E-06	-0.39301	-0.00021332	-0.37551	-0.00020383	542.7975197223367	105.7	0.89027	105.7	105.36	106.25	0					65	31	3	0	0	0	1.0054	1	13612	13612		35.618	1.4457	1	191290			84831	624	59185	59277	93866	93866					0.042742885492771165
VLALILTHT	9	Unmodified	_VLALILTHT_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.3310852050781	2	490.810585	979.606617	-1.2183	-0.00059794	1.3416	0.00065849	0.12336	6.0546E-05	490.8110844075414	90.744	0.50376	90.744	90.384	90.887	0					23	11	3	0	0	0	0.024541	1	11428	11428		7.6903	0	1	191420			84832	5881	59186	59278	93867	93867					0.11599807862364742
VLALLELPE	9	Unmodified	_VLALLELPE_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.80340576171875	2	498.802426	995.590298	-0.032016	-1.5969E-05	2.1041	0.0010495	2.0721	0.0010336	498.80335500721344	52.799	1.1628	52.891	52.674	53.836	0.091938					99	31	4	0	0	0	0.88411	1	5615	5615		33.516	1.5607	1	12396000			84833	6209	59187	59279	93868	93868					0.09232681905609752
VLALLITL	8	Unmodified	_VLALLITL_					0	0	0			REV__ENSG00000125255|ENST00000245312|SLC10A2	REV__ENSG00000125255|ENST00000245312|SLC10A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	429.24017333984375	2	428.299322	854.584091	0.032645	1.3982E-05	-2.7842	-0.0011925	-2.7516	-0.0011785	428.2980305367929	31.276	0.60553	31.123	30.928	31.534	-0.15231					20	15	2	0	0	0	0.027866	1	2076	2076		4.6817	0	1	181830	+		84834	22805	59188	59280	93869	93869					0.15098208464758045
VLALLITL	8	Unmodified	_VLALLITL_					0	0	0			REV__ENSG00000125255|ENST00000245312|SLC10A2	REV__ENSG00000125255|ENST00000245312|SLC10A2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	428.299322	854.584091	-0.07089	-3.0362E-05	-3.0277	-0.0012967	-3.0985	-0.0013271	428.2978942403701	31.229	0.49943	31.044	30.784	31.283	-0.18503	-0.039512	-0.00012447	NaN	4.6817	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121520	+		84835	22805	59188	59280							0.15098208464758045
VLALPNGQLVL	11	Unmodified	_VLALPNGQLVL_					0	0	0			REV__nc|ENSG00000158113|Q8N309-2|LRRC43	REV__nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8534545898438	2	568.855524	1135.69649	-0.66068	-0.00037583	-3.3379	-0.0018988	-3.9986	-0.0022746	568.8534924489414	101.15	1.6136	101.15	100.78	102.39	0					120	36	5	0	0	0	1.0399	2	12979	12979;12999		27.882	4.8398	1	8405100	+		84836	25175	59189	59281	93870;93871	93870					0.1340743747093711
VLALPNGQLVL	11	Unmodified	_VLALPNGQLVL_					0	0	0			REV__nc|ENSG00000158113|Q8N309-2|LRRC43	REV__nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.853271484375	2	568.855524	1135.69649	0.16699	9.4994E-05	-3.9808	-0.0022645	-3.8138	-0.0021695	568.8531476773758	101.29	1.5817	101.12	100.84	102.42	-0.17178					102	36	5	0	0	0	1.0399	1	12568	12568		27.882	0	1	6685000	+		84837	25175	59189	59281	93872	93872					0.1340743747093711
VLALPSVAL	9	Unmodified	_VLALPSVAL_					0	0	0		ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7879333496094	2	441.786579	881.558604	-0.30922	-0.00013661	3.3597	0.0014843	3.0505	0.0013477	441.78798563803605	43.02	2.2928	43.02	42.786	45.079	0					149	64	5	0	0	0	0.96855	1	4003	4003		26.796	1.3459	1	23586000			84838	6557	59190	59282	93873	93873					0.11308733942325944
VLALPSVAL	9	Unmodified	_VLALPSVAL_					0	0	0		ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7881164550781	2	441.786579	881.558604	0.87176	0.00038513	2.2048	0.00097404	3.0765	0.0013592	441.78747647612784	40.712	1.9602	40.589	40.197	42.158	-0.12317					202	55	5	0	0	0	0.96855	2	3643	3643;3656		26.796	0	1	30089000			84839	6557	59190	59282	93874;93875	93874					0.11308733942325944
VLALPSVAL	9	Unmodified	_VLALPSVAL_					0	0	0		ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7880859375	2	441.786579	881.558604	-0.14438	-6.3786E-05	3.1599	0.001396	3.0155	0.0013322	441.787903461034	40.762	1.8988	40.785	40.387	42.286	0.023006					181	54	5	0	0	0	0.97516	1	3616	3616		25.45	0	1	39693000			84840	6557	59190	59282	93876	93876					0.11308733942325944
VLALPSVAL	9	Unmodified	_VLALPSVAL_					0	0	0		ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7876281738281	2	441.786579	881.558604	0.5436	0.00024016	2.4419	0.0010788	2.9855	0.001319	441.7875773536456	43.102	2.1581	43.133	42.939	45.097	0.030827					145	60	5	0	0	0	0.90698	1	3976	3976		31.955	5.1588	1	24747000			84841	6557	59190	59282	93877	93877					0.11308733942325944
VLALPSVAL	9	Unmodified	_VLALPSVAL_					0	0	0		ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	ENSG00000156885|ENST00000287490|COX6A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.78790283203125	2	441.786579	881.558604	-0.34704	-0.00015332	3.3795	0.001493	3.0324	0.0013397	441.78799059467195	43.095	2.3661	42.982	42.775	45.141	-0.11253					131	63	5	0	0	0	0.96121	1	3901	3901		28.254	4.0515	1	16234000			84842	6557	59190	59282	93878	93878					0.11308733942325944
VLALRALEG	9	Unmodified	_VLALRALEG_					0	0	0			REV__ENSG00000234127|ENST00000454678|TRIM26	REV__ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.771484375	2	471.292559	940.570566	0.55417	0.00026117	-1.7191	-0.00081019	-1.1649	-0.00054902	471.291716415025	46.629	0.49938	46.629	46.273	46.772	0					18	13	2	0	0	0	0.024381	1	4613	4613		37.159	9.2769	1	122220	+		84843	28913	59191	59283	93879	93879					0.09790350685523208
VLALTVPGL	9	Unmodified	_VLALTVPGL_					0	0	0		ENST00000005340.9_1_17:7128967-7129144:-|nuORF	ENST00000005340.9_1_17:7128967-7129144:-|nuORF	ENST00000005340.9_1_17:7128967-7129144:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.7877502441406	2	441.786579	881.558604	-0.43648	-0.00019283	3.3822	0.0014942	2.9457	0.0013014	441.78796500551965	43.27	2.2731	43.044	42.833	45.106	-0.22597					132	61	5	0	0	0	0.80658	2	3979	3951;3979		38.806	3.6054	1	17296000			84844	11096	59192	59284	93880;93881	93881					0.11308733942325944
VLALWALVP	9	Unmodified	_VLALWALVP_					0	0	0		ENST00000351010.6_1_5:149602275-149624861:-|nuORF	ENST00000351010.6_1_5:149602275-149624861:-|nuORF	ENST00000351010.6_1_5:149602275-149624861:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.248046875	2	491.310221	980.605889	0.12934	6.3549E-05	-0.28285	-0.00013897	-0.1535	-7.5417E-05	491.3099745504856	68.447	0.6353	68.466	68.198	68.833	0.018913					25	16	2	0	0	0	0.024289	1	8132	8132		21.702	0	1	321510			84845	12597	59193	59285	93882	93882					0.11481013213301594
VLAMPLLL	8	Unmodified	_VLAMPLLL_					0	0	0		ENST00000419810.6_1_2:10563224-10563620:+|nuORF	ENST00000419810.6_1_2:10563224-10563620:+|nuORF	ENST00000419810.6_1_2:10563224-10563620:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.2536926269531	2	435.280075	868.545597	0.20528	8.9356E-05	3.0129	0.0013114	3.2181	0.0014008	435.28132841679326	50.183	0.56484	50.078	49.82	50.385	-0.10558					24	14	2	0	0	0	0.027866	1	5088	5088		33.493	5.2387	1	298800			84846	13962	59194	59286	93883	93883					0.10606579558600515
VLAMPLLL	8	Unmodified	_VLAMPLLL_					0	0	0		ENST00000419810.6_1_2:10563224-10563620:+|nuORF	ENST00000419810.6_1_2:10563224-10563620:+|nuORF	ENST00000419810.6_1_2:10563224-10563620:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	435.280075	868.545597	-0.18241	-7.9401E-05	3.3843	0.0014731	3.2019	0.0013937	435.2815892694149	50.471	0.58925	50.471	50.052	50.642	0	0.25598	0.00028116	NaN	24.504	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110540			84847	13962	59194	59286							0.10606579558600515
VLANVISEP	9	Unmodified	_VLANVISEP_					0	0	0		APP|p.M580V|1|0.6|ENSG00000142192|chr21:25911912-25911912|T/C|missense_variant	APP|p.M580V|1|0.6|ENSG00000142192|chr21:25911912-25911912|T/C|missense_variant	APP|p.M580V|1|0.6|ENSG00000142192|chr21:25911912-25911912|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.3106994628906	2	471.26875	940.522947	0.26106	0.00012303	2.7624	0.0013018	3.0235	0.0014249	471.27062633437436	34.385	0.37882	34.381	34.19	34.568	-0.0045624					12	9	2	0	0	0	0.024319	1	2530	2530		56.721	12.19	1	64893			84848	108	59195	59287	93884	93884					0.05030651694664812
VLANVISEP	9	Unmodified	_VLANVISEP_					0	0	0		APP|p.M580V|1|0.6|ENSG00000142192|chr21:25911912-25911912|T/C|missense_variant	APP|p.M580V|1|0.6|ENSG00000142192|chr21:25911912-25911912|T/C|missense_variant	APP|p.M580V|1|0.6|ENSG00000142192|chr21:25911912-25911912|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.26875	940.522947	0.015549	7.3279E-06	1.0413	0.00049071	1.0568	0.00049804	471.269163264164	34.648	0.19132	34.648	34.515	34.706	0	0.13378	-0.00077585	NaN	66.429	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76793			84849	108	59195	59287							0.05030651694664812
VLANVLGLL	9	Unmodified	_VLANVLGLL_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.7664794921875	2	456.299853	910.585153	-0.057844	-2.6394E-05	2.7754	0.0012664	2.7176	0.00124	456.3010193376728	44.075	1.3979	44.112	43.419	44.817	0.036903					71	39	2	0	0	0	0.024325	1	4044	4044		40.573	5.3719	1	1173800			84850	611	59196	59288	93885	93885					0.1262842283365444
VLANVLGLL	9	Unmodified	_VLANVLGLL_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.299853	910.585153	-0.59478	-0.0002714	2.736	0.0012484	2.1412	0.00097703	456.30096750108976	44.085	2.0018	43.98	42.742	44.744	-0.10468	-0.037915	-0.00031236	NaN	31.955	98	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	961530			84851	611	59196	59288							0.1262842283365444
VLANVLGLL	9	Unmodified	_VLANVLGLL_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.299853	910.585153	-0.91815	-0.00041895	3.1025	0.0014157	2.1844	0.00099672	456.3011167600268	44.238	2.1225	43.994	42.712	44.835	-0.2444	-0.024109	2.213E-05	NaN	31.955	125	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037900			84852	611	59196	59288							0.1262842283365444
VLANVLGLL	9	Unmodified	_VLANVLGLL_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;CYB561|p.Y217Tfs*3|1|0.2|ENSG00000008283|chr17:63434509-63434509|A/-|frameshift_variant;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.299853	910.585153	-0.92494	-0.00042205	3.2166	0.0014677	2.2916	0.0010457	456.30113756605476	44.214	2.0634	43.995	42.76	44.823	-0.21939	-0.023257	0.00012622	NaN	31.955	122	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1391200			84853	611	59196	59288							0.1262842283365444
VLAPLFVYL	9	Unmodified	_VLAPLFVYL_					0	0	0		ENSG00000157240|ENST00000287934|FZD1;ENSG00000155760|ENST00000286201|FZD7;FZD2|p.F425L|1|0.17|ENSG00000180340|chr17:44558963-44558963|C/G|missense_variant;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.8189086914062	2	517.817879	1033.6212	0.11782	6.1008E-05	-0.1606	-8.3164E-05	-0.042787	-2.2156E-05	517.8176026656681	105.55	0.70149	105.55	105.28	105.98	0					59	20	5	0	0	0	0.22343	3	13546	13546;13558;13569		85.909	25.506	1	1058300			84854	6587;8973	59197	59289	93886;93887;93888	93886					0.10573880010497305
VLAPLFVYL	9	Unmodified	_VLAPLFVYL_					0	0	0		ENSG00000157240|ENST00000287934|FZD1;ENSG00000155760|ENST00000286201|FZD7;FZD2|p.F425L|1|0.17|ENSG00000180340|chr17:44558963-44558963|C/G|missense_variant;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.8184814453125	2	517.817879	1033.6212	-0.053769	-2.7842E-05	0.054255	2.8094E-05	0.00048616	2.5174E-07	517.8177357671252	105.49	0.66341	105.49	105.26	105.92	0.00097656					61	23	4	0	0	0	0.22343	5	13503	13491;13497;13503;13513;13522		85.909	25.506	1	928430			84855	6587;8973	59197	59289	93889;93890;93891;93892;93893	93891					0.10573880010497305
VLAPLFVYL	9	Unmodified	_VLAPLFVYL_					0	0	0		ENSG00000157240|ENST00000287934|FZD1;ENSG00000155760|ENST00000286201|FZD7;FZD2|p.F425L|1|0.17|ENSG00000180340|chr17:44558963-44558963|C/G|missense_variant;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1;ENSG00000180340|ENST00000315323|FZD2	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.8204956054688	2	517.817879	1033.6212	-0.34751	-0.00017995	0.3419	0.00017704	-0.00561	-2.905E-06	517.8179162661872	105.6	0.71975	105.6	105.38	106.1	0.00014496					57	24	3	0	0	0	0.22343	4	13467	13467;13476;13483;13488		85.909	25.506	1	1049200			84856	6587;8973	59197	59289	93894;93895;93896;93897	93894					0.10573880010497305
VLAPLHSLAS	10	Unmodified	_VLAPLHSLAS_					0	0	0		ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	ENSG00000172889|ENST00000308874|EGFL7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27496337890625	2	504.297842	1006.58113	-0.15898	-8.0172E-05	-0.60476	-0.00030498	-0.76373	-0.00038515	504.29730781665205	56.779	0.55176	56.877	56.616	57.168	0.097893					27	15	3	0	0	0	0.03519	1	6242	6242		24.203	0	1	391450			84857	8318	59198	59290	93898	93898					0.07810333339944009
VLAPLIALV	9	Unmodified	_VLAPLIALV_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.8126525878906	2	454.812596	907.61064	0.69049	0.00031404	-0.50484	-0.00022961	0.18564	8.4433E-05	454.8123190165907	100.22	0.52263	100.22	100.01	100.53	0					25	12	3	0	0	0	0.48384	2	12821	12821;12833		60.404	0	1	245100			84858	38096	59199	59291	93899;93900	93899					0.15313897356077177
VLAPLIALV	9	Unmodified	_VLAPLIALV_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;TMX2-CTNND1|11|fusion;TMX2-CTNND1|12|fusion;TMX2-CTNND1|14|fusion;TMX2-CTNND1|15|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.8109130859375	2	454.812596	907.61064	0.11255	5.1189E-05	0.23222	0.00010562	0.34477	0.00015681	454.8124864639198	100.2	0.47688	100.21	100.04	100.51	0.010109					19	11	2	0	0	0	0.48384	2	12778	12778;12790		60.404	11.193	1	236870			84859	38096	59199	59291	93901;93902	93901					0.15313897356077177
VLAQARLW	8	Unmodified	_VLAQARLW_					0	0	0			REV__ENST00000497613.2_1_8:145667249-145667900:-|nuORF	REV__ENST00000497613.2_1_8:145667249-145667900:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.79132080078125	2	478.787444	955.560336	-0.31898	-0.00015272	-1.442	-0.00069039	-1.7609	-0.00084311	478.7867643352563	46.095	0.72117	45.834	45.666	46.387	-0.26118					30	18	3	0	0	0	0.027866	1	4392	4392		62.978	2.6845	1	501850	+		84860	33855	59200	59292	93903	93903					0.0807778775093766
VLAQFFDL	8	Unmodified	_VLAQFFDL_					0	0	0			REV__nc|ENSG00000111530|Q86VP6-2|CAND1	REV__nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	476.3223571777344	2	476.760561	951.506569	0.076063	3.6264E-05	3.7521	0.0017888	3.8281	0.0018251	476.7622472670074	66.372	3.2238	66.402	65.552	68.775	0.030106					144	85	2	0	0	0	0.027866	1	7856	7856		55.504	32.462	1	1627700	+		84861	21921	59201	59293	93904	93904					0.028875705285713593
VLAQFFDL	8	Unmodified	_VLAQFFDL_					0	0	0			REV__nc|ENSG00000111530|Q86VP6-2|CAND1	REV__nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.3219909667969	2	476.760561	951.506569	0.10441	4.9776E-05	3.7406	0.0017834	3.845	0.0018331	476.762236258177	66.603	0.90652	66.354	65.535	66.441	-0.24839					32	22	2	0	0	0	0.027866	1	7648	7648		40.573	21.213	1	413690	+		84862	21921	59201	59293	93905	93905					0.028875705285713593
VLARGKLL	8	Unmodified	_VLARGKLL_					0	0	0			REV__nc|ENSG00000088280|Q8TDY4-2|ASAP3	REV__nc|ENSG00000088280|Q8TDY4-2|ASAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.7801513671875	2	435.300188	868.585822	-0.45785	-0.0001993	0.033457	1.4564E-05	-0.42439	-0.00018474	435.3000247207702	40.221	0.29412	40.071	39.859	40.153	-0.1497					13	7	2	0	0	0	0.027866	1	3478	3478		28.254	0	1	145080	+		84863	20809	59202	59294	93906	93906					0.14627262273381803
VLARIDAAAF	10	Unmodified	_VLARIDAAAF_					0	0	0		ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.7391357421875	2	523.803291	1045.59203	-0.61387	-0.00032155	0.51345	0.00026895	-0.10042	-5.26E-05	523.8035562978836	46.938	0.4474	46.938	46.733	47.181	0					19	11	2	0	0	0	0.03519	1	4643	4643		30.504	11.144	1	290470			84864	1068	59203	59295	93907	93907					0.07105735714230832
VLARIDAAAF	10	Unmodified	_VLARIDAAAF_					0	0	0		ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.803291	1045.59203	0.15846	8.3004E-05	-0.39351	-0.00020612	-0.23505	-0.00012312	523.8028992037418	47.149	0.45922	46.996	46.736	47.196	-0.15301	-0.0626	-0.00056082	NaN	38.806	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249740			84865	1068	59203	59295							0.07105735714230832
VLARIDAAAF	10	Unmodified	_VLARIDAAAF_					0	0	0		ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.803291	1045.59203	-0.46589	-0.00024403	0.57635	0.00030189	0.11046	5.786E-05	523.8035277314292	46.93	0.37556	46.989	46.803	47.179	0.059097	-0.069805	0.00045521	NaN	38.806	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211740			84866	1068	59203	59295							0.07105735714230832
VLARIDAAAF	10	Unmodified	_VLARIDAAAF_					0	0	0		ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	ENSG00000040608|ENST00000043402|RTN4R	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.803291	1045.59203	-0.38621	-0.0002023	-1.9546	-0.0010238	-2.3408	-0.0012261	523.800772513274	47.409	0.14969	47.312	47.2	47.35	-0.096649	0.25317	-0.0021962	NaN	38.806	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31634			84867	1068	59203	59295							0.07105735714230832
VLARIFKET	9	Unmodified	_VLARIFKET_					0	0	0		nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-5|ERBB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.2490844726562	2	538.826766	1075.63898	-0.52052	-0.00028047	0.49287	0.00026557	-0.027655	-1.4901E-05	538.8267167625063	56.067	0.59818	56.067	55.679	56.277	0					31	16	3	0	0	0	0.024405	1	6213	6213		35.618	10.044	1	319620			84868	1301	59204	59296	93908	93908					0.10418595265377917
VLARKPKMC	9	Unmodified	_VLARKPKMC_					0	0	0		ENSG00000106367|ENST00000337619|AP1S1;nc|ENSG00000106367|P61966-2|AP1S1;nc|ENSG00000182287|P56377|AP1S2;ENSG00000182287|ENST00000672987|AP1S2;nc|ENSG00000182287|P56377-2|AP1S2	ENSG00000106367|ENST00000337619|AP1S1;nc|ENSG00000182287|P56377|AP1S2	ENSG00000106367|ENST00000337619|AP1S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2586059570312	2	523.30409	1044.59363	-1.1441	-0.00059872	0.036194	1.8941E-05	-1.1079	-0.00057977	523.3041142588357	24.669	0.53314	24.669	24.341	24.874	0					25	11	3	0	0	0	0.024487	1	1113	1113		31.955	8.9124	1	140800			84869	2784;9122	59205	59297	93909	93909					0.07311330206994171
VLARLIGEP	9	Unmodified	_VLARLIGEP_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.6461181640625	2	484.300384	966.586216	-0.53164	-0.00025747	-0.26365	-0.00012768	-0.79529	-0.00038516	484.30003591669185	48.33	0.36132	48.233	48.076	48.438	-0.097549					12	9	2	0	0	0	0.024506	1	4766	4766		23.042	2.0956	1	96172			84870	8851	59206	59298	93910	93910					0.10158637202584941
VLARLIGEP	9	Unmodified	_VLARLIGEP_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.646484375	2	484.300384	966.586216	-1.0621	-0.00051439	1.1391	0.00055165	0.076925	3.7255E-05	484.30084569632555	48.689	0.32196	48.409	48.253	48.575	-0.27977					10	8	2	0	0	0	0.024436	1	4824	4824		30.504	0	1	119200			84871	8851	59206	59298	93911	93911					0.10158637202584941
VLARYPGSV	9	Unmodified	_VLARYPGSV_					0	0	0		ENST00000369583.3_1_10:112270861-112271212:+|nuORF	ENST00000369583.3_1_10:112270861-112271212:+|nuORF	ENST00000369583.3_1_10:112270861-112271212:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.2789001464844	2	481.276909	960.539266	-0.093547	-4.5022E-05	4.4267	0.0021305	4.3332	0.0020855	481.2788966998881	70.032	0.62059	69.781	69.483	70.103	-0.25063					42	14	4	0	0	0	0.59099	1	8149	8149		53.351	7.3995	1	1039600			84872	12929	59207	59299	93912	93912					0.057417776514284924
VLASPQQYT	9	Unmodified	_VLASPQQYT_					0	0	0		TMEM72|p.E147Q|1|0.09|ENSG00000187783|chr10:44934745-44934745|G/C|missense_variant	TMEM72|p.E147Q|1|0.09|ENSG00000187783|chr10:44934745-44934745|G/C|missense_variant	TMEM72|p.E147Q|1|0.09|ENSG00000187783|chr10:44934745-44934745|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.77667236328125	2	503.763832	1005.51311	-0.35856	-0.00018063	0.068823	3.4671E-05	-0.28974	-0.00014596	503.7651022653427	73.69	0.23507	73.425	73.331	73.566	-0.26479					6	5	2	0	0	0	0.024405	1	8696	8696		44.117	25.792	1	106430			84873	38089	59208	59300	93913	93913					0.010574636892783928
VLASRLVL	8	Unmodified	_VLASRLVL_					0	0	0		ENSG00000131873|ENST00000254190|CHSY1	ENSG00000131873|ENST00000254190|CHSY1	ENSG00000131873|ENST00000254190|CHSY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.76123046875	2	435.792195	869.569838	-0.49814	-0.00021709	1.4406	0.0006278	0.94246	0.00041072	435.7928085975741	34.321	0.38457	34.371	34.173	34.557	0.050255					15	9	2	0	0	0	0.027866	1	2467	2467		47.916	0	1	69133			84874	4558	59209	59301	93914	93914					0.12983556036476784
VLASVKNKI	9	Unmodified	_VLASVKNKI_					0	0	0		ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.28094482421875	2	486.316035	970.617516	0.62895	0.00030587	-0.58217	-0.00028312	0.046775	2.2747E-05	486.3156389419286	70.093	0.49094	69.8	69.509	70	-0.29292					33	11	4	0	0	0	0.024374	1	8451	8451		58.782	8.7574	1	1130700			84875	7224	59210	59302	93915	93915					0.13103210236658924
VLATAAPLL	9	Unmodified	_VLATAAPLL_					0	0	0			REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.77996826171875	2	434.778754	867.542954	0.47497	0.00020651	2.855	0.0012413	3.33	0.0014478	434.7798589866304	47.13	1.0835	46.977	46.586	47.669	-0.15301					89	29	4	0	0	0	0.88411	1	4678	4678		33.516	0	1	2312100	+		84876	32097	59211	59303	93916	93916					0.10388447425293634
VLATAAPLL	9	Unmodified	_VLATAAPLL_					0	0	0			REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.7799987792969	2	434.778754	867.542954	-0.095049	-4.1325E-05	3.2879	0.0014295	3.1928	0.0013882	434.78010469367223	36.167	2.0758	36.205	35.569	37.645	0.038044					161	55	3	0	0	0	0.88411	1	2851	2851		33.516	0	1	9580100	+		84877	32097	59211	59303	93917	93917					0.10388447425293634
VLATAAPLL	9	Unmodified	_VLATAAPLL_					0	0	0			REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7802734375	2	434.778754	867.542954	0.072718	3.1616E-05	2.8406	0.001235	2.9133	0.0012666	434.77984164352523	46.699	1.5772	46.505	46.165	47.742	-0.19387					162	43	6	0	0	0	0.97516	1	4627	4627		25.45	1.2474	1	7314300	+		84878	32097	59211	59303	93918	93918					0.10388447425293634
VLATAAPLL	9	Unmodified	_VLATAAPLL_					0	0	0			REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7799377441406	2	434.778754	867.542954	0.30511	0.00013265	2.618	0.0011382	2.9231	0.0012709	434.7797610540028	48.309	1.399	48.122	47.596	48.995	-0.18684					119	37	4	0	0	0	0.88411	1	4885	4885		33.516	6.7195	1	3718000	+		84879	32097	59211	59303	93919	93919					0.10388447425293634
VLATALFF	8	Unmodified	_VLATALFF_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.78778076171875	2	441.260197	880.50584	0.52939	0.0002336	0.85908	0.00037908	1.3885	0.00061268	441.25966915688656	43.353	0.40396	43.384	43.082	43.486	0.030823					14	10	2	0	0	0	0.027866	1	4000	4000		29.842	13.137	1	104920	+		84880	20079	59212	59304	93920	93920					0.06080775879513567
VLATLKIK	8	Unmodified	_VLATLKIK_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.2923583984375	2	443.310221	884.605889	1.2965	0.00057477	1.7445	0.00077338	3.0411	0.0013481	443.31096539872993	36.947	0.30785	36.947	36.887	37.195	0					12	7	2	0	0	0	0.027866	1	2999	2999		33.516	9.3128	1	87164	+		84881	19839	59213	59305	93921	93921					0.15897013213327682
VLATLKIK	8	Unmodified	_VLATLKIK_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	443.310221	884.605889	0.24414	0.00010823	6.2961	0.0027911	6.5403	0.0028994	443.3132113075343	36.872	0.19648	36.809	36.669	36.866	-0.063385	-0.12807	0.0019897	NaN	47.916	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55371	+		84882	19839	59213	59305							0.15897013213327682
VLATLLNNL	9	Unmodified	_VLATLLNNL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.78729248046875	2	485.800217	969.585882	-0.59387	-0.0002885	-2.3879	-0.00116	-2.9818	-0.0014485	485.798680711819	45.036	0.14425	45.08	44.966	45.11	0.043877					5	3	2	0	0	0	0.024292	1	4280	4280		49.442	13.823	1	59966			84883	3459	59214	59306	93922	93922					0.09987217482705546
VLATRPRLG	9	Unmodified	_VLATRPRLG_					0	0	0		ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.7957763671875	2	491.811451	981.608348	-0.68217	-0.0003355	-0.36685	-0.00018042	-1.049	-0.00051592	491.8110921911504	48.64	1.007	48.707	48.154	49.161	0.066795					38	27	2	0	0	0	0.024457	1	4843	4843		21.96	0	1	322760			84884	12133	59215	59307	93923	93923					0.11680861670981812
VLATVPLLG	9	Unmodified	_VLATVPLLG_					0	0	0		ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7880859375	2	441.786579	881.558604	-0.34704	-0.00015332	3.3795	0.001493	3.0324	0.0013397	441.78799059467195	43.095	2.3661	42.982	42.775	45.141	-0.11253					131	63	5	0	0	0	1.0051	1	3911	3911		19.36	0	1	16234000			84885	7656	59216	59308	93924	93924					0.11308733942337312
VLAVHILKAR	10	Unmodified	_VLAVHILKAR_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3228759765625	2	560.371675	1118.7288	0.17848	0.00010001	1.9257	0.0010791	2.1041	0.0011791	560.3731660878125	67.791	0.18488	67.81	67.707	67.892	0.018921					6	4	2	0	0	0	0.03519	1	8009	8009		10.866	0	1	44879			84886	3761	59217	59309	93925	93925					0.17418269664608488
VLAVIAPNWHE	11	Unmodified	_VLAVIAPNWHE_					0	0	0			REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.90325927734375	3	416.896029	1247.66626	0.34864	0.00014535	-4.1396	-0.0017258	-3.791	-0.0015804	416.89434878753354	32.665	0.92062	32.472	31.942	32.863	-0.19261					43	17	4	0	0	0	0.024734	1	2190	2190		41.08	14.033	1	507870	+		84887	24925	59218	59310	93926	93926					0.05233078805736113
VLAVIAPNWHE	11	Unmodified	_VLAVIAPNWHE_					0	0	0			REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	416.896029	1247.66626	-0.19208	-8.0079E-05	-3.4871	-0.0014538	-3.6792	-0.0015338	416.894551731033	32.58	0.90815	32.343	32.042	32.95	-0.23667	-0.050033	0.00023342	NaN	41.08	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	935070	+		84888	24925	59218	59310							0.05233078805736113
VLAVIAPNWHE	11	Unmodified	_VLAVIAPNWHE_					0	0	0			REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	416.896029	1247.66626	-0.01049	-4.3733E-06	-3.6868	-0.001537	-3.6973	-0.0015414	416.8944249456226	32.521	0.60809	32.364	32.079	32.687	-0.15772	-0.029225	-1.6308E-05	NaN	41.08	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499810	+		84889	24925	59218	59310							0.05233078805736113
VLAVLAVNL	9	Unmodified	_VLAVLAVNL_					0	0	0			REV__ENSG00000164040|ENST00000296425|PGRMC2	REV__ENSG00000164040|ENST00000296425|PGRMC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7666931152344	2	456.299853	910.585153	-0.64652	-0.00029501	3.3094	0.0015101	2.6629	0.0012151	456.30132301244527	39.297	1.0368	39.199	38.807	39.844	-0.098751					46	28	2	0	0	0	0.024418	1	3328	3328		28.254	3.7503	1	209140	+		84890	25675	59219	59311	93927	93927					0.1262842283365444
VLAVLCFI	8	Unmodified	_VLAVLCFI_					0	0	0			REV__ENSG00000175893|ENST00000380916|ZDHHC21	REV__ENSG00000175893|ENST00000380916|ZDHHC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	439.2660827636719	2	439.264425	876.514297	0.40112	0.0001762	4.2142	0.0018512	4.6153	0.0020274	439.2661463744232	43.317	2.7502	43.348	42.646	45.396	0.030827					176	77	3	0	0	0	0.9599	1	4046	4046		43.626	0	1	3207400	+		84891	26980	59220	59312	93928	93928					0.07110006524499113
VLAVRVLV	8	Unmodified	_VLAVRVLV_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;ENST00000529028.1_1_11:12297633-12308767:+|nuORF	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	434.80242919921875	2	434.802563	867.590573	-0.10355	-4.5025E-05	0.41901	0.00018219	0.31545	0.00013716	434.80258553449914	65.927	0.92402	65.686	65.414	66.338	-0.24145					64	22	4	0	0	0	0.95417	1	7577	7577		44.531	0	1	3442700			84892	18282	59221	59313	93929	93929					0.15148146416140662
VLAVVVRL	8	Unmodified	_VLAVVVRL_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.8027038574219	2	434.802563	867.590573	-0.028794	-1.252E-05	0.10652	4.6316E-05	0.077727	3.3796E-05	434.80246974338013	65.915	1.0267	65.664	65.353	66.38	-0.25112					59	25	3	0	0	0	0.67787	2	7559	7547;7559		69.093	6.1145	1	3429700	+		84893	27672	59222	59314	93930;93931	93931					0.15148146416129293
VLAVYRLAI	9	Unmodified	_VLAVYRLAI_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.3262023925781	2	509.326402	1016.63825	-0.048329	-2.4615E-05	-0.21789	-0.00011098	-0.26622	-0.00013559	509.32621852016973	77.811	0.80763	77.549	77.226	78.034	-0.26202					57	18	4	0	0	0	0.4855	2	9259	9259;9273		60.294	8.9585	1	5836100	+		84894	23031	59223	59315	93932;93933	93932					0.13059800616315442
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	492.79730224609375	2	492.797478	983.580402	0.12232	6.0277E-05	-0.025163	-1.24E-05	0.097153	4.7877E-05	492.79725297863723	97.576	2.249	97.576	96.398	98.647	0					103	51	3	0	0	0	0.088511	5	12464	12432;12441;12452;12464;12478		114.59	37.905	1	1478300			84895	5913	59224	59316	93934;93935;93936;93937;93938	93937					0.08795538690912963
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.79742431640625	2	492.797478	983.580402	0.46511	0.0002292	-0.44357	-0.00021859	0.021541	1.0615E-05	492.79706052738436	97.518	2.7521	97.527	95.437	98.189	0.0089111					82	63	2	0	0	0	0.049708	3	12405	12394;12405;12417		128.82	51.969	1	1424600			84896	5913	59224	59316	93939;93940;93941	93940					0.08795538690912963
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.7973327636719	2	492.797478	983.580402	0.73028	0.00035988	-0.60478	-0.00029803	0.1255	6.1845E-05	492.79696481530806	97.667	2.1546	97.665	96.703	98.857	-0.0020752					84	49	3	0	0	0	0.088511	4	12376	12367;12376;12388;12402		114.59	40.331	1	1152100			84897	5913	59224	59316	93942;93943;93944;93945	93943					0.08795538690912963
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.797478	983.580402	0.41863	0.0002063	-0.25487	-0.0001256	0.16376	8.0702E-05	492.79704079757016	97.474	1.0796	97.338	96.702	97.781	-0.1367	-0.11636	5.4514E-05	NaN	128.82	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185950			84898	5913	59224	59316							0.08795538690912963
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.797478	983.580402	1.1219	0.00055287	-0.85182	-0.00041977	0.27009	0.0001331	492.79676500002034	97.416	0.88982	97.292	96.884	97.774	-0.12368	-0.16175	-0.00053383	NaN	128.82	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187960			84899	5913	59224	59316							0.08795538690912963
VLAWGLLNV	9	Unmodified	_VLAWGLLNV_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-4|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.797478	983.580402	-0.071962	-3.5463E-05	0.23756	0.00011707	0.1656	8.1607E-05	492.7973722028359	97.487	0.78786	97.326	97.084	97.872	-0.16106	-0.1277	0.00053985	NaN	128.82	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195120			84900	5913	59224	59316							0.08795538690912963
VLCCAIRNSR	10	Unmodified	_VLCCAIRNSR_					0	0	0		nc|ENSG00000134198|O60636-2|TSPAN2;ENSG00000134198|ENST00000369516|TSPAN2	nc|ENSG00000134198|O60636-2|TSPAN2	nc|ENSG00000134198|O60636-2|TSPAN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.8115844726562	2	567.79716	1133.57977	0.12027	6.8289E-05	-4.2127	-0.0023919	-4.0924	-0.0023236	567.7950930220184	71.045	0.4756	71.045	70.787	71.263	0					19	11	2	0	0	0	0.03519	1	8597	8597		37.812	11.119	1	287040			84901	4763	59225	59317	93946	93946					0.0183205270786857
VLCFRLHFTK	10	Unmodified	_VLCFRLHFTK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENST00000549378.5_1_12:62860945-62902293:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	422.51324462890625	3	421.905871	1262.69578	-0.50214	-0.00021186	3.0399	0.0012826	2.5378	0.0010707	421.90693709586145	31.705	0.60068	31.705	31.469	32.07	0					25	14	2	0	0	0	0.03519	1	2159	2159		19.263	7.3303	1	118890			84902	16521	59226	59318	93947	93947					0.07494319550210093
VLCKLINSL	9	Unmodified	_VLCKLINSL_					0	0	0		ENSG00000144834|ENST00000478951|TAGLN3	ENSG00000144834|ENST00000478951|TAGLN3	ENSG00000144834|ENST00000478951|TAGLN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.2948913574219	2	501.804445	1001.59434	0.025408	1.275E-05	-1.4341	-0.00071964	-1.4087	-0.00070689	501.80332057835903	53.938	0.38083	53.938	53.763	54.144	0					16	10	2	0	0	0	0.024319	1	5878	5878		47.657	0	1	254520			84903	5774	59227	59319	93948	93948					0.09360448127665677
VLCLCPESAP	10	Unmodified	_VLCLCPESAP_					0	0	0		ENST00000433686.6_1_19:58595781-58596009:-|nuORF	ENST00000433686.6_1_19:58595781-58596009:-|nuORF	ENST00000433686.6_1_19:58595781-58596009:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.26708984375	2	516.248646	1030.48274	-0.73952	-0.00038178	4.3123	0.0022262	3.5728	0.0018445	516.2506796614939	32.273	2.3234	32.273	31.131	33.454	0					108	59	3	0	0	0	0.03519	1	2093	2093		31.955	2.8053	1	1267200			84904	14232	59228	59320	93949	93949					-0.031283542917663
VLCLLAIIFI	10	Unmodified	_VLCLLAIIFI_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.358642578125	2	559.356314	1116.69807	-1.0152	-0.00056787	-1.2183	-0.00068146	-2.2335	-0.0012493	559.3556216029515	106.16	0.37318	106.02	105.81	106.18	-0.1328					23	14	2	0	0	0	1.1309	1	13208	13208		26.796	0	1	196700			84905	6901	59229	59321	93950	93950					0.14439355235322182
VLCLLRPW	8	Unmodified	_VLCLLRPW_					0	0	0		ENST00000460612.5_1_1:53372128-53387345:-|nuORF;nc|ENSG00000121310|Q86YB7-2|ECHDC2;ENSG00000121310|ENST00000371522|ECHDC2	ENST00000460612.5_1_1:53372128-53387345:-|nuORF	ENST00000460612.5_1_1:53372128-53387345:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.60418701171875	2	500.294048	998.573543	0.15255	7.6319E-05	2.5734	0.0012874	2.7259	0.0013638	500.29500793163083	56.425	0.62277	56.209	55.845	56.468	-0.21607					29	15	3	0	0	0	0.027866	1	6089	6089		42.474	20.515	1	243190			84906	3862	59230	59322	93951	93951					0.07419902538674705
VLCLLRPW	8	Unmodified	_VLCLLRPW_					0	0	0		ENST00000460612.5_1_1:53372128-53387345:-|nuORF;nc|ENSG00000121310|Q86YB7-2|ECHDC2;ENSG00000121310|ENST00000371522|ECHDC2	ENST00000460612.5_1_1:53372128-53387345:-|nuORF	ENST00000460612.5_1_1:53372128-53387345:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.6050720214844	2	500.294048	998.573543	-0.56619	-0.00028326	2.942	0.0014719	2.3758	0.0011886	500.29522718316855	56.43	0.62884	56.206	55.915	56.544	-0.2248					37	15	3	0	0	0	0.027866	1	6083	6083		33.516	0	1	369660			84907	3862	59230	59322	93952	93952					0.07419902538674705
VLCPLRDL	8	Unmodified	_VLCPLRDL_					0	0	0			REV__ENST00000463758.1_1_1:1244702-1244984:+|nuORF	REV__ENST00000463758.1_1_1:1244702-1244984:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.81298828125	2	464.767863	927.521173	-0.37844	-0.00017589	3.8417	0.0017855	3.4632	0.0016096	464.7691105035153	38.039	0.13265	37.859	37.775	37.908	-0.17929					6	3	2	0	0	0	0.027866	1	3101	3101		9.4706	0	1	69372	+		84908	32945	59231	59323	93953	93953					0.05451319405051436
VLCPPLTL	8	Unmodified	_VLCPPLTL_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.1900939941406	2	428.254057	854.493561	1.9956	0.0008546	1.4713	0.00063007	3.4668	0.0014847	428.2546894096509	24.837	0.3944	24.665	24.513	24.907	-0.17151					12	8	2	0	0	0	0.027866	1	1117	1117		37.028	0	1	17719	+		84909	36337	59232	59324	93954	93954					0.06049416144821862
VLCRLCSK	8	Unmodified	_VLCRLCSK_					0	0	0		ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.7549133300781	2	461.254065	920.493578	-0.65905	-0.00030399	-0.33915	-0.00015643	-0.9982	-0.00046042	461.25571986969874	46.256	1.0085	46.053	45.528	46.536	-0.20226					67	27	4	0	0	0	0.97924	1	4447	4447		40.573	1.7665	1	2299100			84910	4287	59233	59325	93955	93955					0.030150928731586646
VLCRQFPT	8	Unmodified	_VLCRQFPT_					0	0	0			REV__nc|ENSG00000116198|O60308-2|CEP104	REV__nc|ENSG00000116198|O60308-2|CEP104	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2846374511719	2	482.257662	962.500772	-0.017069	-8.2315E-06	1.2232	0.00058991	1.2062	0.00058168	482.2583339035075	54.675	0.4788	54.525	54.266	54.745	-0.15036					24	13	2	0	0	0	0.027866	1	5991	5991		45.952	11.779	1	389410	+		84911	36589	59234	59326	93956	93956					0.018021487452415386
VLCRYTSL	8	Unmodified	_VLCRYTSL_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2847900390625	2	477.757495	953.500437	-0.73761	-0.0003524	-2.4219	-0.0011571	-3.1595	-0.0015095	477.75610392724195	55.652	0.98883	55.75	55.294	56.283	0.098015					58	26	4	0	0	0	0.027866	1	6050	6050		30.504	2.6214	1	710290	+		84912	21249	59235	59327	93957	93957					0.021827290253895626
VLCTIVFLA	9	Unmodified	_VLCTIVFLA_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.2644958496094	2	489.788264	977.561975	-0.099131	-4.8553E-05	3.7504	0.0018369	3.6513	0.0017883	489.79001263325995	50.675	1.8901	50.675	49.913	51.803	0					99	54	3	0	0	0	0.024386	1	5355	5355		52.299	18.784	1	1067200	+		84913	23793	59236	59328	93958	93958					0.07229660724681253
VLCTPQKPS	9	Unmodified	_VLCTPQKPS_					0	0	0		ENST00000389561.6_1_12:132562514-132562787:+|nuORF	ENST00000389561.6_1_12:132562514-132562787:+|nuORF	ENST00000389561.6_1_12:132562514-132562787:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.78387451171875	2	486.762778	971.511002	-0.15622	-7.6043E-05	-1.9112	-0.00093031	-2.0674	-0.0010063	486.76210762968117	100.88	0.17169	100.87	100.72	100.89	-0.0054474					6	3	2	0	0	0	0.024457	1	12814	12814		29.15	3.6994	1	69456			84914	13379	59237	59329	93959	93959					0.024107116798290917
VLCVFLLTV	9	Unmodified	_VLCVFLLTV_					0	0	0		ENST00000377191.4_1_20:21370021-21370174:+|nuORF	ENST00000377191.4_1_20:21370021-21370174:+|nuORF	ENST00000377191.4_1_20:21370021-21370174:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.7507629394531	2	503.803914	1005.59328	-0.41389	-0.00020852	-4.378	-0.0022057	-4.7919	-0.0024142	503.8015962607767	33.938	0.35091	33.938	33.739	34.09	0					15	8	2	0	0	0	0.024183	1	2473	2473		60.294	3.5729	1	119410			84915	13199	59238	59330	93960	93960					0.09070233758779978
VLCVPYLS	8	Unmodified	_VLCVPYLS_					0	0	0		ENST00000273375.7_1_3:120408429-120408636:-|nuORF	ENST00000273375.7_1_3:120408429-120408636:-|nuORF	ENST00000273375.7_1_3:120408429-120408636:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2637634277344	2	447.243689	892.472826	0.044306	1.9816E-05	-0.85871	-0.00038405	-0.81441	-0.00036424	447.24381084097195	45.938	0.48584	45.938	45.714	46.199	0					17	13	2	0	0	0	0.027866	1	4520	4520		37.028	3.5129	1	245390			84916	11667	59239	59331	93961	93961					0.022288257651553067
VLDAATLGPLS	11	Unmodified	_VLDAATLGPLS_					0	0	0			REV__ENST00000403325.5_1_22:19808897-19842309:-|nuORF	REV__ENST00000403325.5_1_22:19808897-19842309:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2737426757812	2	528.800414	1055.58628	-0.85264	-0.00045087	-1.0731	-0.00056745	-1.9257	-0.0010183	528.7996483028669	47.286	0.54536	47.286	47.076	47.622	0					27	15	2	0	0	0	0.024768	1	4751	4751		39.253	2.8061	1	1076100	+		84917	31888	59240	59332	93962	93962					0.06070592411901998
VLDAKPLL	8	Unmodified	_VLDAKPLL_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	434.2745361328125	2	434.778754	867.542954	0.066923	2.9097E-05	3.1259	0.0013591	3.1928	0.0013882	434.78002409768595	48.515	2.6376	48.515	47.906	50.544	0					183	75	4	0	0	0	0.027866	1	4852	4852		60.294	0	1	1902700	+		84918	23378	59241	59333	93963	93963					0.10388447425293634
VLDAPGHTSW	10	Unmodified	_VLDAPGHTSW_					0	0	0			REV__CON__Q2KJF1	REV__CON__Q2KJF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2824096679688	2	541.766906	1081.51926	-1.2883	-0.00069796	1.1382	0.00061666	-0.15007	-8.1301E-05	541.767717902853	52.502	0.48851	52.233	51.944	52.432	-0.26903					15	12	2	0	0	0	0.03519	1	5447	5447		42.396	8.8806	1	135570	+	+	84919	19577	59242	59334	93964	93964					-0.018240180791963212
VLDASVKEV	9	Unmodified	_VLDASVKEV_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.2755126953125	2	480.274032	958.533512	-0.56871	-0.00027314	-0.067757	-3.2542E-05	-0.63646	-0.00030568	480.27388961355445	43.928	1.0669	43.928	43.658	44.725	0					65	30	4	0	0	0	0.048057	1	4150	4150		129.42	27.821	1	2912900			84920	4429	59243	59335	93965	93965					0.05258634349104341
VLDASVKEV	9	Unmodified	_VLDASVKEV_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.275146484375	2	480.274032	958.533512	-0.85289	-0.00040962	0.41579	0.00019969	-0.4371	-0.00020993	480.2740553603693	44.048	1.1004	43.904	43.461	44.561	-0.14471					60	31	4	0	0	0	0.030064	1	4156	4156		141.52	28.109	1	3013700			84921	4429	59243	59335	93966	93966					0.05258634349104341
VLDASVKEV	9	Unmodified	_VLDASVKEV_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2753601074219	2	480.274032	958.533512	-0.26423	-0.0001269	-0.14527	-6.9771E-05	-0.40951	-0.00019668	480.2738502992458	43.915	0.83497	43.952	43.743	44.578	0.0369					44	23	2	0	0	0	0.048057	1	4097	4097		129.42	30.792	1	3107800			84922	4429	59243	59335	93967	93967					0.05258634349104341
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	564.2864990234375	2	564.284597	1126.55464	-0.7	-0.000395	-1.817	-0.0010253	-2.517	-0.0014203	564.2847691075751	66.997	1.4337	66.997	66.63	68.064	0					78	35	4	0	0	0	0.30449	2	7994	7979;7994		75.043	9.2401	1	4247000			84923	3463	59244	59336	93968;93969	93969					-0.003574003420453664
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	564.2979125976562	2	564.284597	1126.55464	-0.49247	-0.00027789	-2.1045	-0.0011876	-2.597	-0.0014655	564.2846352515496	67.33	1.3501	67.042	66.707	68.057	-0.28834					75	33	4	0	0	0	0.18994	2	7994	7994;7999		90.601	5.6853	1	4034800			84924	3463	59244	59336	93970;93971	93970					-0.003574003420453664
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	564.2924194335938	2	564.284597	1126.55464	-0.62026	-0.00035001	0.081747	4.6129E-05	-0.53852	-0.00030388	564.2847023777113	67.093	1.3156	67.117	66.769	68.085	0.023911					65	32	5	0	0	0	0.28753	2	7909	7909;7933		77.318	5.0617	1	3897400			84925	3463	59244	59336	93972;93973	93972					-0.003574003420453664
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.7872924804688	2	564.284597	1126.55464	0.42089	0.0002375	0.071735	4.0479E-05	0.49262	0.00027798	564.2839868066454	67.381	0.7098	67.126	66.828	67.538	-0.25517					48	16	4	0	0	0	0.34489	1	7770	7770		69.628	6.3214	1	1207300			84926	3463	59244	59336	93974	93974					-0.003574003420453664
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2852783203125	2	564.284597	1126.55464	-0.20638	-0.00011646	0.29632	0.00016721	0.089941	5.0753E-05	564.2843864844629	67.358	0.70634	67.132	66.896	67.603	-0.22641					46	16	4	0	0	0	0.45795	1	7765	7765		62.107	1.1355	1	1378700			84927	3463	59244	59336	93975	93975					-0.003574003420453664
VLDDKDYFL	9	Unmodified	_VLDDKDYFL_					0	0	0		ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	ENST00000550617.1_1_12:102267096-102267252:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	564.284597	1126.55464	-0.52787	-0.00029787	0.62451	0.0003524	0.096644	5.4535E-05	564.2846186226689	67.336	0.67092	67.098	66.878	67.549	-0.23814	0.012767	0.00056549	NaN	90.601	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1390400			84928	3463	59244	59336							-0.003574003420453664
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.3072509765625	2	524.307875	1046.6012	-0.098936	-5.1873E-05	-1.4207	-0.00074486	-1.5196	-0.00079673	524.3070362173403	71.396	0.83302	71.396	70.656	71.489	0					38	20	2	0	0	0	0.062622	3	8642	8632;8642;8654		124.08	47.306	1	15267000			84929	8711	59245	59337	93976;93977;93978	93977					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.3070068359375	2	524.307875	1046.6012	0.28972	0.0001519	-1.736	-0.00091019	-1.4463	-0.00075829	524.3068447544946	71.728	1.011	71.44	70.677	71.688	-0.28858					57	25	5	0	0	0	0.062622	2	8661	8649;8661		124.08	30.885	1	13108000			84930	8711	59245	59337	93979;93980	93980					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.3074340820312	2	524.307875	1046.6012	0.14593	7.651E-05	-1.7507	-0.0009179	-1.6048	-0.00084139	524.3069452935372	71.441	0.52877	71.452	71.05	71.579	0.010735					25	13	2	0	0	0	0.094442	1	8577	8577		112.41	30.106	1	15074000			84931	8711	59245	59337	93981	93981					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.3098754882812	2	524.307875	1046.6012	-0.014905	-7.815E-06	-2.786	-0.0014607	-2.8009	-0.0014685	524.305984370498	71.688	1.74	71.413	71.188	72.928	-0.27509					105	41	5	0	0	0	0.17845	1	8367	8367		93.143	23.516	1	10472000			84932	8711	59245	59337	93982	93982					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.3078002929688	2	524.307875	1046.6012	0.19621	0.00010287	-3.4093	-0.0017875	-3.213	-0.0016846	524.3055528248348	71.688	1.7381	71.426	71.159	72.897	-0.26199					121	41	5	0	0	0	0.17845	2	8369	8369;8381		93.143	24.356	1	9680300			84933	8711	59245	59337	93983;93984	93983					0.07976084279880524
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.3043212890625	2	532.305332	1062.59611	-0.9652	-0.00051378	1.0721	0.00057066	0.10686	5.6882E-05	532.3054609379652	63.12	1.2968	63.12	62.729	64.026	0					104	34	5	0	0	0	0.30449	3	7352	7352;7364;7376		75.043	9.2401	1	9491800			84934	2997	59246	59338	93985;93986;93987	93985					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.3051147460938	2	532.305332	1062.59611	-0.39696	-0.0002113	0.21125	0.00011245	-0.1857	-9.885E-05	532.3052780156318	63.365	1.3344	63.113	62.724	64.059	-0.25141					85	35	5	0	0	0	0.30449	2	7382	7370;7382		75.043	19.539	1	7509400			84935	2997	59246	59338	93988;93989	93989					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.3055419921875	2	532.305332	1062.59611	0.79499	0.00042318	-1.005	-0.00053495	-0.20998	-0.00011178	532.3045992059642	63.101	1.1874	63.156	62.76	63.947	0.054104					86	31	5	0	0	0	0.43628	2	7283	7283;7296		63.534	8.0296	1	7723800			84936	2997	59246	59338	93990;93991	93990					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.3049926757812	2	532.305332	1062.59611	-0.20481	-0.00010902	-0.38625	-0.0002056	-0.59105	-0.00031462	532.3049777016188	63.385	1.2168	63.157	62.81	64.027	-0.22773					70	30	4	0	0	0	0.18994	3	7154	7142;7154;7166		90.601	22.457	1	10906000			84937	2997	59246	59338	93992;93993;93994	93993					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.304931640625	2	532.305332	1062.59611	-0.59161	-0.00031492	0.2474	0.00013169	-0.34422	-0.00018323	532.3051088022723	63.393	1.2879	63.209	62.915	64.203	-0.18386					77	32	4	0	0	0	0.086035	3	7151	7151;7163;7175		115.49	54.522	1	10950000			84938	2997	59246	59338	93995;93996;93997	93995					0.06731780417271693
VLDDKLYVV	9	Unmodified	_VLDDKLYVV_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.3049926757812	2	532.305332	1062.59611	0.15126	8.0519E-05	-0.74475	-0.00039643	-0.59348	-0.00031591	532.3047608094935	63.484	1.2773	63.226	62.835	64.112	-0.25824					78	32	4	0	0	0	0.094442	3	7155	7145;7155;7167		112.41	43.624	1	11598000			84939	2997	59246	59338	93998;93999;94000	93999					0.06731780417271693
VLDDSTAKL	9	Unmodified	_VLDDSTAKL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	481.2112731933594	2	481.263665	960.512776	-0.11096	-5.34E-05	-0.85763	-0.00041275	-0.96859	-0.00046615	481.2631314958873	43.74	0.66726	43.635	43.363	44.03	-0.10468					36	17	3	0	0	0	0.022657	1	4033	4033		110.12	27.879	1	726700			84940	928	59247	59339	94001	94001					0.030940439694290944
VLDDSTAKL	9	Unmodified	_VLDDSTAKL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.21221923828125	2	481.263665	960.512776	-0.71611	-0.00034464	-0.22764	-0.00010955	-0.94374	-0.00045419	481.26338401412244	43.931	0.61813	43.711	43.455	44.073	-0.21939					32	16	3	0	0	0	0.023061	1	4050	4050		101.6	27.346	1	753140			84941	928	59247	59339	94002	94002					0.030940439694290944
VLDELKSSKS	10	Unmodified	_VLDELKSSKS_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ENST00000490152.1_1_13:20641134-20642237:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3261108398438	2	553.308603	1104.60265	-0.098364	-5.4425E-05	-0.24516	-0.00013565	-0.34352	-0.00019007	553.8092896932334	54.181	0.08886	53.936	53.891	53.98	-0.2453					4	2	2	0	0	0	0.03519	1	5727	5727		13.454	0	1	173710			84942	3883	59248	59340	94003	94003					0.05453673578017515
VLDELLKT	8	Unmodified	_VLDELLKT_					0	0	0			REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.77703857421875	2	465.778951	929.543348	0.3767	0.00017546	-3.2562	-0.0015167	-2.8795	-0.0013412	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.0516	1	10006	10006		29.15	2.4566	1	1283800	+		84943	24742	59249	59341	94004	94004					0.07575822354476713
VLDFMVIAV	9	Unmodified	_VLDFMVIAV_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.78692626953125	2	503.785721	1005.55689	0.71569	0.00036056	2.7258	0.0013732	3.4415	0.0017338	503.7870478937873	54.217	1.1421	54.315	53.94	55.083	0.098015					89	32	5	0	0	0	0.30842	1	5856	5856		74.517	8.7134	1	10060000	+		84944	27855	59250	59342	94005	94005					0.0543335686206774
VLDFPFLY	8	Unmodified	_VLDFPFLY_					0	0	0		ENST00000581444.5_1_18:20889645-20956810:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241	ENST00000581444.5_1_18:20889645-20956810:-|nuORF	ENST00000581444.5_1_18:20889645-20956810:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7038269042969	2	507.270761	1012.52697	-0.059066	-2.9963E-05	1.2052	0.00061138	1.1462	0.00058142	507.27124780778615	32.529	0.66758	32.293	31.954	32.622	-0.23666					25	15	2	0	0	0	0.027866	1	2273	2273		39.021	1.993	1	149570			84945	4802	59251	59343	94006	94006					0.021207411883892746
VLDFYDVPI	9	Unmodified	_VLDFYDVPI_					0	0	0		MRPL50|p.N131D|1|0.37|ENSG00000136897|chr9:101390552-101390552|T/C|missense_variant	MRPL50|p.N131D|1|0.37|ENSG00000136897|chr9:101390552-101390552|T/C|missense_variant	MRPL50|p.N131D|1|0.37|ENSG00000136897|chr9:101390552-101390552|T/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8316040039062	2	540.784233	1079.55391	-0.96864	-0.00052383	2.3405	0.0012657	1.3719	0.00074188	540.7850718028864	75.528	0.36133	75.284	75.116	75.477	-0.24455					19	9	3	0	0	0	0.02435	1	9257	9257		34.173	0	1	254210			84946	17994	59252	59344	94007	94007					0.017318050088988457
VLDHVNLLH	9	Unmodified	_VLDHVNLLH_					0	0	0			REV__ENSG00000090857|ENST00000288050|PDPR	REV__ENSG00000090857|ENST00000288050|PDPR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	530.298583984375	2	530.300916	1058.58728	-0.079339	-4.2073E-05	-4.4206	-0.0023442	-4.4999	-0.0023863	530.2986568771888	18.213	1.3273	18.081	17.663	18.99	-0.13148					65	26	5	0	0	0	0.80658	1	279	279		38.806	1.647	1	3857200	+		84947	20885	59253	59345	94008	94008					0.06032851571490028
VLDILAKNL	9	Unmodified	_VLDILAKNL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.8165588378906	2	499.815867	997.617182	-0.2159	-0.00010791	0.49776	0.00024879	0.28187	0.00014088	499.8147140525297	66.895	0.84743	66.895	66.519	67.367	0					52	20	4	0	0	0	0.94809	1	7976	7976		29.15	0	1	1794100			84948	3387	59254	59346	94009	94009					0.11827790516804271
VLDIRLWF	8	Unmodified	_VLDIRLWF_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|179|1|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|179|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.238525390625	2	531.310752	1060.60695	-0.37921	-0.00020148	-2.5235	-0.0013408	-2.9027	-0.0015423	531.3095982806025	39.87	0.57726	39.64	39.391	39.968	-0.23021					27	14	3	0	0	0	0.027866	1	3443	3443		29.15	1.2673	1	189830	+		84949	19336	59255	59347	94010	94010					0.07907227582222731
VLDIRLWF	8	Unmodified	_VLDIRLWF_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|179|1|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|179|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.310752	1060.60695	-0.38317	-0.00020358	-2.6293	-0.001397	-3.0124	-0.0016005	531.3092618097184	39.722	0.61633	39.572	39.205	39.821	-0.1497	-0.049117	-0.00020907	NaN	29.15	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263030	+		84950	19336	59255	59347							0.07907227582222731
VLDIRLWF	8	Unmodified	_VLDIRLWF_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|179|1|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|179|1|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.310752	1060.60695	-0.76473	-0.00040631	-1.9042	-0.0010117	-2.669	-0.001418	531.3096862730658	39.877	0.54825	39.652	39.38	39.928	-0.225	0.030969	0.00056136	NaN	29.15	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254690	+		84951	19336	59255	59347							0.07907227582222731
VLDLRGIKNTH	11	Unmodified	_VLDLRGIKNTH_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3690185546875	2	633.369861	1264.72517	-0.65795	-0.00041673	-0.54786	-0.000347	-1.2058	-0.00076372	633.3694183053203	93.968	1.7038	93.974	93.307	95.011	0.0059814					148	40	4	0	0	0	0.95664	1	11888	11888		46.457	6.3986	1	3181800	+		84952	27316	59256	59348	94011	94011					0.1033955510006308
VLDNLLAFV	9	Unmodified	_VLDNLLAFV_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.2945556640625	2	502.294768	1002.57498	-0.31002	-0.00015572	1.899	0.00095384	1.5889	0.00079812	502.2949886629202	102.23	0.70419	102.23	101.95	102.65	0					43	15	4	0	0	0	0.096521	3	13105	13093;13105;13118		111.65	42.861	1	1745500			84953	5064	59257	59349	94012;94013;94014	94013					0.07379815108424737
VLDNLLAFV	9	Unmodified	_VLDNLLAFV_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.294677734375	2	502.294768	1002.57498	-0.16823	-8.45E-05	0.82342	0.0004136	0.65519	0.0003291	502.2952977191527	102.2	1.0041	102.21	101.78	102.78	0.0073471					37	23	2	0	0	0	0.16468	3	13060	13049;13060;13072		96.19	24.409	1	1470600			84954	5064	59257	59349	94015;94016;94017	94016					0.07379815108424737
VLDNLLAFV	9	Unmodified	_VLDNLLAFV_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2942199707031	2	502.294768	1002.57498	0.28262	0.00014196	1.7811	0.00089462	2.0637	0.0010366	502.2951171078753	102.27	1.162	102.27	101.67	102.83	-0.0054474					56	26	4	0	0	0	0.047345	3	13024	13012;13024;13037		129.68	58.387	1	1686200			84955	5064	59257	59349	94018;94019;94020	94019					0.07379815108424737
VLDNLLAFV	9	Unmodified	_VLDNLLAFV_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2945556640625	2	502.294768	1002.57498	0.44023	0.00022112	0.62724	0.00031506	1.0675	0.00053618	502.2952905619934	102.18	0.91065	102.05	101.8	102.71	-0.12931					32	21	2	0	0	0	0.12602	2	12674	12674;12685		104.75	33.451	1	764750			84956	5064	59257	59349	94021;94022	94021					0.07379815108424737
VLDNLLAFV	9	Unmodified	_VLDNLLAFV_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.29437255859375	2	502.294768	1002.57498	0.045993	2.3102E-05	0.79046	0.00039704	0.83645	0.00042015	502.2953164539095	102.14	0.96004	102.01	101.79	102.76	-0.12666					37	23	2	0	0	0	0.11092	3	12699	12689;12699;12715		108.09	28.972	1	867030			84957	5064	59257	59349	94023;94024;94025	94024					0.07379815108424737
VLDNLLAFV	9	Unmodified	_VLDNLLAFV_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2939453125	2	502.294768	1002.57498	-0.074426	-3.7384E-05	0.16998	8.5378E-05	0.095549	4.7994E-05	502.2948440330956	102.25	0.60912	102.08	101.85	102.46	-0.17178					28	14	2	0	0	0	0.047345	3	12687	12678;12687;12699		129.68	52.908	1	833950			84958	5064	59257	59349	94026;94027;94028	94027					0.07379815108424737
VLDPELKVV	9	Unmodified	_VLDPELKVV_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.3071594238281	2	506.307875	1010.6012	0.15853	8.0265E-05	0.051471	2.606E-05	0.21	0.00010633	506.3077712435844	83.991	1.2368	83.853	83.383	84.62	-0.13789					60	28	4	0	0	0	0.72875	1	10147	10147		44.117	8.4985	1	1196600	+		84959	36680	59258	59350	94029	94029					0.09632084279905939
VLDPNKRLS	9	Unmodified	_VLDPNKRLS_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7378540039062	2	521.306198	1040.59784	-0.47513	-0.00024769	2.6369	0.0013746	2.1618	0.0011269	521.3069663231825	62.172	0.47641	61.946	61.573	62.049	-0.22663					20	12	2	0	0	0	0.024381	1	7196	7196		29.15	2.4566	1	197160			84960	6823	59259	59351	94030	94030					0.07916834225898128
VLDPNKRLS	9	Unmodified	_VLDPNKRLS_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7379150390625	2	521.306198	1040.59784	-0.86448	-0.00045066	2.8109	0.0014654	1.9464	0.0010147	521.3070596926599	61.838	0.31742	61.901	61.735	62.052	0.062763					14	8	2	0	0	0	0.02435	1	7092	7092		26.693	0	1	129010			84961	6823	59259	59351	94031	94031					0.07916834225898128
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.323974609375	2	562.323525	1122.6325	-0.66855	-0.00037594	0.38191	0.00021475	-0.28664	-0.00016118	562.323686296349	69.574	1.3253	69.307	68.912	70.237	-0.26724					104	31	6	0	0	0	0.027092	6	8060	8049;8060;8072;8084;8096;8118		143.89	39.765	1	15926000			84962	10764	59260	59352	94032;94033;94034;94035;94036;94037	94033					0.07608657313994627
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	562.3237915039062	2	562.323525	1122.6325	0.15697	8.8267E-05	-0.4679	-0.00026311	-0.31093	-0.00017484	562.3232172047386	69.506	1.2737	69.256	68.908	70.182	-0.25063					109	30	5	0	0	0	0.043667	6	8062	8053;8062;8073;8085;8097;8113		131.03	26.285	1	16517000			84963	10764	59260	59352	94038;94039;94040;94041;94042;94043	94039					0.07608657313994627
VLDPYLLKY	9	Unmodified	_VLDPYLLKY_					0	0	0		ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	ENSG00000239789|ENST00000285298|MRPS17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	562.3237915039062	2	562.323525	1122.6325	-0.33454	-0.00018812	0.02839	1.5964E-05	-0.30615	-0.00017215	562.3235129953082	69.462	1.2325	69.24	68.894	70.127	-0.22245					104	29	5	0	0	0	0.043667	6	8044	8035;8044;8056;8068;8081;8096		131.03	33.559	1	15624000			84964	10764	59260	59352	94044;94045;94046;94047;94048;94049	94045					0.07608657313994627
VLDQLDICT	9	Unmodified	_VLDQLDICT_					0	0	0			REV__PKHD1L1|p.L796Q|1|0.26|ENSG00000205038|chr8:109419123-109419123|T/A|missense_variant	REV__PKHD1L1|p.L796Q|1|0.26|ENSG00000205038|chr8:109419123-109419123|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.3260803222656	2	510.257525	1018.5005	-0.58132	-0.00029662	1.4634	0.00074673	0.88212	0.00045011	510.257755378895	78.159	0.32942	78.175	77.905	78.235	0.015907					12	7	2	0	0	0	0.02435	1	9556	9556		51.335	23.453	1	143360	+		84965	37382	59261	59353	94050	94050					-0.008013157652499103
VLDQLDICT	9	Unmodified	_VLDQLDICT_					0	0	0			REV__PKHD1L1|p.L796Q|1|0.26|ENSG00000205038|chr8:109419123-109419123|T/A|missense_variant	REV__PKHD1L1|p.L796Q|1|0.26|ENSG00000205038|chr8:109419123-109419123|T/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.257525	1018.5005	0.80506	0.00041079	-0.57157	-0.00029165	0.23349	0.00011914	510.2570473820446	78.308	0.36569	78.116	77.891	78.257	-0.1921	-0.0044953	-0.0011039	NaN	47.657	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174940	+		84966	37382	59261	59353							-0.008013157652499103
VLDRHMDEYKL	11	Unmodified	_VLDRHMDEYKL_					0	0	0			REV__ENST00000475131.1_1_22:44224871-44234759:-|nuORF	REV__ENST00000475131.1_1_22:44224871-44234759:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7782897949219	3	473.574738	1417.70238	0.14144	6.6984E-05	2.6288	0.0012449	2.7703	0.0013119	473.5756596576729	24.852	0.62298	24.852	24.429	25.052	0					26	13	3	0	0	0	0.024736	1	1063	1063		25.126	6.5949	1	53878	+		84967	23123	59262	59354	94051	94051					0.010241679202863452
VLDRLNVI	8	Unmodified	_VLDRLNVI_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2925720214844	2	471.292559	940.570566	0.54867	0.00025858	-0.64577	-0.00030435	-0.097105	-4.5765E-05	471.2922474433009	50.099	1.4463	50.18	49.775	51.221	0.080994					107	41	4	0	0	0	0.56067	1	5165	5165		79.939	0.48821	1	26009000			84968	3207	59263	59355	94052	94052					0.09790350685523208
VLDSAPAVL	9	Unmodified	_VLDSAPAVL_					0	0	0			REV__ENST00000399173.5_1_1:27952575-27952749:-|nuORF	REV__ENST00000399173.5_1_1:27952575-27952749:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.7696228027344	2	442.758018	883.501483	-0.21769	-9.6383E-05	-1.9974	-0.00088438	-2.2151	-0.00098077	442.75691531949775	20.622	1.0063	20.518	19.745	20.752	-0.10477					25	20	2	0	0	0	0.024466	1	541	541		25.45	18.715	1	26751	+		84969	31820	59264	59356	94053	94053					0.055072666659384595
VLDSFSAKI	9	Unmodified	_VLDSFSAKI_					0	0	0			REV__ENST00000558594.5_2_15:49907420-49912367:-|nuORF	REV__ENST00000558594.5_2_15:49907420-49912367:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.27783203125	2	490.276575	978.538597	-0.063677	-3.1219E-05	-0.32288	-0.0001583	-0.38656	-0.00018952	490.2762825818869	76.366	0.76899	76.366	76.071	76.84	0					42	18	3	0	0	0	0.4752	1	9433	9433		60.972	0	1	1492100	+		84970	35098	59265	59357	94054	94054					0.04846938211710494
VLDSVDVRL	9	Unmodified	_VLDSVDVRL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2920837402344	2	508.292756	1014.57096	-0.014189	-7.2124E-06	-0.75191	-0.00038219	-0.7661	-0.0003894	508.29207313177085	61.433	0.57808	61.433	61.18	61.758	0					22	10	3	0	0	0	0.12914	1	7114	7114		104.06	0	1	1546300			84971	7903	59266	59358	94055	94055					0.06425725614712974
VLDSVDVRL	9	Unmodified	_VLDSVDVRL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2911682128906	2	508.292756	1014.57096	0.17634	8.9635E-05	-0.75008	-0.00038126	-0.57373	-0.00029163	508.2920215186414	61.374	0.71896	61.446	61.095	61.814	0.071125					25	11	3	0	0	0	0.086035	1	7025	7025		115.49	0	1	1175500			84972	7903	59266	59358	94056	94056					0.06425725614712974
VLEDFEEV	8	Unmodified	_VLEDFEEV_					0	0	0		ENSG00000121577|ENST00000493094|POPDC2	ENSG00000121577|ENST00000493094|POPDC2	ENSG00000121577|ENST00000493094|POPDC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.7925109863281	2	490.234573	978.454593	-0.63844	-0.00031298	1.3344	0.00065416	0.69594	0.00034118	490.23496874791823	37.848	0.64002	37.669	37.204	37.844	-0.17929					25	16	2	0	0	0	0.027866	1	3044	3044		12.959	0	1	349380			84973	3874	59267	59359	94057	94057					-0.035496376758374026
VLEDFEEV	8	Unmodified	_VLEDFEEV_					0	0	0		ENSG00000121577|ENST00000493094|POPDC2	ENSG00000121577|ENST00000493094|POPDC2	ENSG00000121577|ENST00000493094|POPDC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.234573	978.454593	-0.7965	-0.00039047	0.99099	0.00048582	0.19449	9.5348E-05	490.23467018387635	37.77	0.80014	37.552	37.028	37.828	-0.21848	-0.044218	-0.00039556	NaN	7.6903	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382030			84974	3874	59267	59359							-0.035496376758374026
VLEELITK	8	Unmodified	_VLEELITK_					0	0	0			REV__ENSG00000196620|ENST00000338206|UGT2B15;REV__ENSG00000197888|ENST00000317746|UGT2B17	REV__ENSG00000196620|ENST00000338206|UGT2B15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.26922607421875	2	472.786776	943.558998	0.4879	0.00023067	-3.7316	-0.0017642	-3.2437	-0.0015336	472.7849068298523	26.705	0.46112	26.705	26.447	26.908	0					17	10	2	0	0	0	0.027866	1	1394	1394		29.15	15.374	1	144260	+		84975	28206;28357	59268	59360	94058	94058					0.08496108871509023
VLEELITK	8	Unmodified	_VLEELITK_					0	0	0			REV__ENSG00000196620|ENST00000338206|UGT2B15;REV__ENSG00000197888|ENST00000317746|UGT2B17	REV__ENSG00000196620|ENST00000338206|UGT2B15	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.786776	943.558998	-0.18967	-8.9672E-05	-1.9053	-0.00090082	-2.095	-0.00099049	472.78581192092076	26.6	0.50368	26.682	26.456	26.96	0.081293	-0.045377	0.0012821	NaN	29.15	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137530	+		84976	28206;28357	59268	59360							0.08496108871509023
VLEELITK	8	Unmodified	_VLEELITK_					0	0	0			REV__ENSG00000196620|ENST00000338206|UGT2B15;REV__ENSG00000197888|ENST00000317746|UGT2B17	REV__ENSG00000196620|ENST00000338206|UGT2B15	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	472.786776	943.558998	-0.24432	-0.00011551	-2.4607	-0.0011634	-2.705	-0.0012789	472.78526432491617	27.091	0.42082	26.848	26.614	27.035	-0.24217	0.12131	0.00075691	NaN	29.15	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167500	+		84977	28206;28357	59268	59360							0.08496108871509023
VLEELITK	8	Unmodified	_VLEELITK_					0	0	0			REV__ENSG00000196620|ENST00000338206|UGT2B15;REV__ENSG00000197888|ENST00000317746|UGT2B17	REV__ENSG00000196620|ENST00000338206|UGT2B15	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.786776	943.558998	-0.2244	-0.00010609	-2.6911	-0.0012723	-2.9155	-0.0013784	472.7854323872278	26.896	0.38596	26.728	26.506	26.892	-0.16816	0.00085712	0.00053904	NaN	29.15	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131110	+		84978	28206;28357	59268	59360							0.08496108871509023
VLEERQVL	8	Unmodified	_VLEERQVL_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.305419921875	2	493.287474	984.560395	-0.49757	-0.00024545	-4.401	-0.002171	-4.8986	-0.0024164	493.28551646553694	69.279	0.29866	69.294	69.053	69.352	0.015129					18	7	3	0	0	0	0.027866	1	8255	8255		47.916	14.4	1	988090	+		84979	20649	59269	59361	94059	94059					0.06749742960278127
VLEESLAAV	9	Unmodified	_VLEESLAAV_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7607421875	2	465.760758	929.506963	0.2699	0.00012571	-0.30187	-0.0001406	-0.031967	-1.4889E-05	465.7605587627355	86.539	1.5618	86.539	86.128	87.69	0					103	36	4	0	0	0	0.4855	1	10907	10907		60.294	8.9585	1	3222000			84980	17711	59270	59362	94060	94060					0.03938945457753107
VLEESLAAV	9	Unmodified	_VLEESLAAV_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7607116699219	2	465.760758	929.506963	0.15209	7.0838E-05	-0.17226	-8.0234E-05	-0.020173	-9.3958E-06	465.7606084022292	86.637	1.8854	86.45	85.991	87.877	-0.18695					107	44	4	0	0	0	0.26797	2	10487	10487;10546		79.939	0	1	4526900			84981	17711	59270	59362	94061;94062	94061					0.03938945457753107
VLEESLAAV	9	Unmodified	_VLEESLAAV_					0	0	0		HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	HERVH-int_dup112|chr1:68386440-68389684:+|17.390725168865124|0.162428503918862|6.74|510.0|116|2|anti-sense	MSMS	OPSCC_40_ClassI_Rep-3	6	465.7606506347656	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.749	1	86.612	86.112	87.112	-0.13734								0	0	0	0.10108	1	10525	10525		92.191	0	1				84982	17711	59270	59362	94063	94063					0.03938945457753107
VLEFELRKA	9	Unmodified	_VLEFELRKA_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.7936401367188	2	552.824224	1103.63389	-0.64965	-0.00035914	-0.23153	-0.000128	-0.88118	-0.00048714	552.8239493141002	66.242	0.74928	66.029	65.629	66.378	-0.21327					38	15	3	0	0	0	0.024506	1	7604	7604		30.504	0	1	441560			84983	4796	59271	59363	94064	94064					0.08622291402775772
VLEGLFVGAL	10	Unmodified	_VLEGLFVGAL_					0	0	0			REV__nc|ENSG00000151287|Q5JUR7-2|TEX30	REV__nc|ENSG00000151287|Q5JUR7-2|TEX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7687072753906	2	509.302593	1016.59063	-0.0186	-9.4732E-06	-4.452	-0.0022674	-4.4706	-0.0022769	509.3003220617516	41.776	0.47815	41.776	41.542	42.02	0					32	13	3	0	0	0	0.03519	1	3791	3791		31.955	0	1	746810	+		84984	36783	59272	59364	94065	94065					0.08300101625468415
VLEIFISNI	9	Unmodified	_VLEIFISNI_					0	0	0		ENST00000366554.2_1_1:241757348-241757720:-|nuORF	ENST00000366554.2_1_1:241757348-241757720:-|nuORF	ENST00000366554.2_1_1:241757348-241757720:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.3093872070312	2	524.307875	1046.6012	0.51295	0.00026894	-3.8719	-0.0020301	-3.359	-0.0017611	524.3053699912336	71.566	1.6923	71.36	71.094	72.787	-0.20614					104	40	5	0	0	0	0.35646	1	8337	8337		68.787	10.005	1	10042000			84985	12817	59273	59365	94066	94066					0.07976084279880524
VLEIFSNIF	9	Unmodified	_VLEIFSNIF_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|83|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|83|2|anti-sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|83|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8311767578125	2	541.30005	1080.58555	-0.56666	-0.00030673	-3.0561	-0.0016543	-3.6228	-0.001961	541.7995286860074	75.304	0.19202	75.314	75.171	75.363	0.010376					6	4	2	0	0	0	0.024436	1	9162	9162		38.806	0	1	142070			84986	17816	59274	59366	94067	94067					0.04847797762840855
VLEILEVLVS	10	Unmodified	_VLEILEVLVS_					0	0	0		nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;RILPL1|p.E146Gfs*6|1|0.14|ENSG00000188026|chr12:123523514-123523518|CTCCT/-|frameshift_variant	nc|ENSG00000188026|Q5EBL4-2|RILPL1	nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.34375	2	557.341915	1112.66928	-0.11476	-6.3961E-05	1.9758	0.0011012	1.8611	0.0010373	557.3429446630656	73.981	0.90208	73.705	73.405	74.307	-0.2769					55	25	3	0	0	0	0.82838	1	8699	8699		58.782	2.3482	1	3768100			84987	9685	59275	59367	94068	94068					0.11744909139906667
VLEKKLVL	8	Unmodified	_VLEKKLVL_					0	0	0			REV__ENST00000486329.1_1_9:130581879-130586657:-|nuORF	REV__ENST00000486329.1_1_9:130581879-130586657:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2926330566406	2	471.323328	940.632104	0.36513	0.00017209	-2.6901	-0.0012679	-2.325	-0.0010958	471.3218769430174	50.389	0.35797	50.238	50.065	50.423	-0.1512					13	10	2	0	0	0	0.027866	1	5239	5239		73.975	10.668	1	171820	+		84988	21649	59276	59368	94069	94069					0.15941282384790156
VLEKLRSIN	9	Unmodified	_VLEKLRSIN_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8010864257812	2	536.329673	1070.64479	-0.59806	-0.00032076	-0.96776	-0.00051904	-1.5658	-0.0008398	536.3292564734414	41.516	0.5662	41.539	41.324	41.89	0.023006					26	15	3	0	0	0	0.024261	1	3660	3660		54.776	34.746	1	242200			84989	10138	59277	59369	94070	94070					0.11229693777045213
VLEKPPFLD	9	Unmodified	_VLEKPPFLD_					0	0	0			REV__nc|ENSG00000108389|Q9NYA4|MTMR4	REV__nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.328857421875	2	529.30005	1056.58555	-0.049486	-2.6193E-05	-4.1046	-0.0021725	-4.154	-0.0021987	529.2980709674032	77.6	0.62493	77.389	77.08	77.705	-0.21087					21	14	2	0	0	0	0.024397	1	9567	9567		31.53	0	1	181500	+		84990	21730	59278	59370	94071	94071					0.059517977628502194
VLELIPELN	9	Unmodified	_VLELIPELN_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3051147460938	2	520.305332	1038.59611	-0.36642	-0.00019065	-0.12605	-6.5587E-05	-0.49248	-0.00025624	520.305250529144	93.624	1.9066	93.624	92.495	94.402	0					92	45	4	0	0	0	0.2508	1	11908	11908		82.241	10.363	1	6754900			84991	5204	59279	59371	94072	94072					0.07835780417281057
VLELVTPPL	9	Unmodified	_VLELVTPPL_					0	0	0		ENST00000599510.1_1_19:49299609-49300643:-|nuORF;nc|ENSG00000105552|O15382-2|BCAT2;ENSG00000105552|ENST00000316273|BCAT2	ENST00000599510.1_1_19:49299609-49300643:-|nuORF	ENST00000599510.1_1_19:49299609-49300643:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.8052978515625	2	490.804968	979.595384	0.60343	0.00029617	0.15894	7.8009E-05	0.76237	0.00037418	490.80522986585635	96.276	1.5143	96.283	95.988	97.502	0.0065079					93	34	5	0	0	0	0.40179	1	12294	12294		65.803	15.779	1	4546800			84992	2691	59280	59372	94073	94073					0.1047698576824132
VLELVTPPL	9	Unmodified	_VLELVTPPL_					0	0	0		ENST00000599510.1_1_19:49299609-49300643:-|nuORF;nc|ENSG00000105552|O15382-2|BCAT2;ENSG00000105552|ENST00000316273|BCAT2	ENST00000599510.1_1_19:49299609-49300643:-|nuORF	ENST00000599510.1_1_19:49299609-49300643:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.8055114746094	2	490.804968	979.595384	0.83764	0.00041112	-0.0083106	-4.0789E-06	0.82933	0.00040704	490.8051528571539	96.333	1.6486	96.335	96.035	97.684	0.0020752					98	37	5	0	0	0	0.36105	1	12265	12265		68.485	2.6815	1	5332500			84993	2691	59280	59372	94074	94074					0.1047698576824132
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_		VLEM(1)QM(1)EGV		VLEM(96)QM(96)EGV	0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2402954101562	2	534.241018	1066.46748	-0.22494	-0.00012017	0.68289	0.00036483	0.45796	0.00024466	534.2411995321897	58.362	0.42592	58.184	57.974	58.4	-0.17775					26	9	3	0	0	0	0.16468	2	6399	6399;6410		96.19	24.895	1	1229800	+		84994	26900	59281	59373	94075;94076	94075		794;795			-0.0630926587959948
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_		VLEM(1)QM(1)EGV		VLEM(85)QM(85)EGV	0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2413330078125	2	534.241018	1066.46748	0.1426	7.6183E-05	0.56091	0.00029966	0.70351	0.00037585	534.2411418954381	58.449	0.54312	58.207	57.958	58.502	-0.24166					26	12	3	0	0	0	0.23085	1	6409	6409		84.916	24.622	1	1569700	+		84995	26900	59281	59373	94077	94077		794;795			-0.0630926587959948
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_					0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	534.241018	1066.46748	-0.35627	-0.00019033	0.65944	0.0003523	0.30318	0.00016197	534.2411473912676	58.04	0.35577	58.04	57.872	58.228	0	-0.071362	-0.00034102	NaN	96.19	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1651500	+		84996	26900	59281	59373				794;795			-0.0630926587959948
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_					0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.241018	1066.46748	-1.2961	-0.00069244	1.6591	0.00088637	0.36301	0.00019393	534.2416531051571	58.271	0.4277	58.096	57.896	58.323	-0.1749	-0.015398	0.00072711	NaN	96.19	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1328500	+		84997	26900	59281	59373				794;795			-0.0630926587959948
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_					0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.241018	1066.46748	-0.8934	-0.00047729	1.3954	0.00074548	0.502	0.00026819	534.2414837746785	57.946	0.42686	58.038	57.797	58.224	0.091217	-0.07364	0.00044533	NaN	96.19	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1137100	+		84998	26900	59281	59373				794;795			-0.0630926587959948
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_					0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	534.241018	1066.46748	-0.22494	-0.00012017	0.68289	0.00036483	0.45796	0.00024466	534.2411995321897	58.362	0.42592	58.184	57.974	58.4	-0.17775	0.072781	-0.00031597	NaN	96.19	26	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1229800	+		84999	26900	59281	59373				794;795			-0.0630926587959948
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_					0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.241018	1066.46748	-0.42437	-0.00022672	1.0539	0.00056301	0.62948	0.0003363	534.2414704828216	58.293	0.51849	58.103	57.978	58.496	-0.19018	-0.0086183	8.0398E-05	NaN	96.19	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1336900	+		85000	26900	59281	59373				794;795			-0.0630926587959948
VLEMQMEGV	9	2 Oxidation (M)	_VLEM(Oxidation (M))QM(Oxidation (M))EGV_					0	0	2			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	534.241018	1066.46748	0.1426	7.6183E-05	0.56091	0.00029966	0.70351	0.00037585	534.2411418954381	58.449	0.54312	58.207	57.958	58.502	-0.24166	0.096238	-0.0004463	NaN	96.19	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1569700	+		85001	26900	59281	59373				794;795			-0.0630926587959948
VLEPLLSLDF	10	Unmodified	_VLEPLLSLDF_					0	0	0			REV__ENSG00000133863|ENST00000643185|TEX15	REV__ENSG00000133863|ENST00000643185|TEX15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	573.3238525390625	2	573.326265	1144.63798	0.17561	0.00010068	-4.0864	-0.0023428	-3.9108	-0.0022422	573.32394098064	107.15	0.61134	107.15	106.86	107.47	0					28	15	2	0	0	0	1.1307	1	13790	13790		26.693	0.62953	1	179510	+		85002	23401	59282	59374	94078	94078					0.0714433610580727
VLEPQLPG	8	Unmodified	_VLEPQLPG_					0	0	0		ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.30291748046875	2	426.744911	851.475269	0.4386	0.00018717	2.519	0.001075	2.9576	0.0012621	426.74508849569213	67.965	0.44299	67.727	67.466	67.909	-0.23814					17	10	2	0	0	0	0.027866	1	7859	7859		37.159	6.6555	1	119010			85003	5525	59283	59375	94079	94079					0.0435899749447799
VLERIHPLET	10	Unmodified	_VLERIHPLET_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	402.2112121582031	3	402.89955	1205.67682	-0.40955	-0.00016501	-4.3527	-0.0017537	-4.7623	-0.0019187	402.8976378451041	36.01	3.051	35.967	34.492	37.543	-0.042454					112	81	2	0	0	0	0.03519	1	2771	2771		33.039	18.261	1	1059800			85004	9617	59284	59376	94080	94080					0.08221061460153578
VLESDIAML	9	Unmodified	_VLESDIAML_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.7882080078125	2	495.762443	989.510333	-0.77177	-0.00038261	-4.1384	-0.0020516	-4.9101	-0.0024343	495.76018269705463	30.611	0.66098	30.611	30.3	30.961	0					36	15	3	0	0	0	0.024354	1	1957	1957		57.811	0	1	637610	+		85005	27684	59285	59377	94081	94081					0.015158722401224622
VLESNPKW	8	Unmodified	_VLESNPKW_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4;ERCC4|p.A428Ifs*20|1|0.05|ENSG00000175595|chr16:13935212-13935213|-/TATTAAAGATCCACAATTT|frameshift_variant	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.8064270019531	2	486.761092	971.507631	-0.44428	-0.00021626	-1.3367	-0.00065065	-1.781	-0.00086691	486.75894967123054	34.583	0.76779	34.579	34.225	34.993	-0.0045624					48	19	4	0	0	0	0.027866	1	2525	2525		33.516	8.0654	1	396050			85006	8575	59286	59378	94082	94082					0.02073784897470432
VLESVTLEP	9	Unmodified	_VLESVTLEP_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7719421386719	2	493.773865	985.533177	-0.78917	-0.00038967	-2.215	-0.0010937	-3.0042	-0.0014834	493.77269736627943	20.777	0.72832	20.777	20.516	21.244	0					23	14	2	0	0	0	0.78069	1	577	577		40.573	1.7665	1	493290			85007	5054	59287	59379	94083	94083					0.03983214629249687
VLETPQPHP	9	Unmodified	_VLETPQPHP_					0	0	0		ENST00000493924.5_1_11:2323379-2334921:+|nuORF	ENST00000493924.5_1_11:2323379-2334921:+|nuORF	ENST00000493924.5_1_11:2323379-2334921:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.28216552734375	2	509.271824	1016.5291	-0.37452	-0.00019073	-2.4097	-0.0012272	-2.7842	-0.0014179	509.2716622512704	23.785	0.21735	23.605	23.477	23.694	-0.17989					6	4	2	0	0	0	0.024436	1	964	964		38.806	10.552	1	15137			85008	15515	59288	59380	94084	94084					0.021491699261900976
VLETTLAQP	9	Unmodified	_VLETTLAQP_					0	0	0		ENST00000296028.3_1_4:74853816-74853858:-|nuORF	ENST00000296028.3_1_4:74853816-74853858:-|nuORF	ENST00000296028.3_1_4:74853816-74853858:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.8050537109375	2	486.274032	970.533512	-0.6388	-0.00031063	1.2412	0.00060357	0.60241	0.00029294	486.27467812431735	34.826	0.31549	34.826	34.629	34.944	0					10	7	2	0	0	0	0.024209	1	2601	2601		39.253	0	1	71492			85009	11836	59289	59381	94085	94085					0.04706634349099659
VLFAEKPLS	9	Unmodified	_VLFAEKPLS_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.2926330566406	2	502.294768	1002.57498	-0.71598	-0.00035963	-4.198	-0.0021086	-4.914	-0.0024683	502.2925567996126	39.042	0.98854	38.943	38.702	39.69	-0.098755					69	27	4	0	0	0	0.43973	1	3317	3317		63.306	1.1989	1	4615500	+		85010	26589	59290	59382	94086	94086					0.07379815108413368
VLFDFVPKI	9	Unmodified	_VLFDFVPKI_					0	0	0			REV__ENSG00000182405|ENST00000397766|PGBD4	REV__ENSG00000182405|ENST00000397766|PGBD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.2766723632812	2	539.320786	1076.62702	-0.53596	-0.00028906	-3.7463	-0.0020204	-4.2822	-0.0023095	539.3185417842104	61.163	0.93973	61.235	60.91	61.85	0.071125					33	16	3	0	0	0	0.024292	1	6947	6947		68.787	10.005	1	1433600	+		85011	27474	59291	59383	94087	94087					0.0917697852216861
VLFDTQLII	9	Unmodified	_VLFDTQLII_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.315673828125	2	531.3157	1060.61685	-0.71227	-0.00037844	0.44694	0.00023747	-0.26532	-0.00014097	531.3157761224343	97.26	2.5222	97.26	96.925	99.447	0					107	57	4	0	0	0	0.016871	6	12422	12389;12399;12410;12422;12435;12461		152.47	27.876	1	1772500			85012	5354	59292	59384	94088;94089;94090;94091;94092;94093	94091					0.0889637079694694
VLFDTQLII	9	Unmodified	_VLFDTQLII_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.315673828125	2	531.3157	1060.61685	0.16192	8.6032E-05	-0.50652	-0.00026912	-0.3446	-0.00018309	531.3153337598757	97.177	1.6453	97.186	96.751	98.396	0.0089111					67	37	2	0	0	0	0.021872	5	12354	12343;12354;12366;12375;12388		148.04	25.204	1	1548300			85013	5354	59292	59384	94094;94095;94096;94097;94098	94095					0.0889637079694694
VLFDTQLII	9	Unmodified	_VLFDTQLII_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.3157	1060.61685	0.67905	0.00036079	-0.61898	-0.00032887	0.060076	3.1919E-05	531.3150795242103	97.238	0.58348	97.101	96.702	97.285	-0.13671	0.0054829	-0.00061262	NaN	152.47	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44448			85014	5354	59292	59384							0.0889637079694694
VLFDTQLII	9	Unmodified	_VLFDTQLII_					0	0	0		ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF	ENSG00000139644|ENST00000267115|TMBIM6	ENSG00000139644|ENST00000267115|TMBIM6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.3157	1060.61685	0.48262	0.00025642	-3.4681	-0.0018427	-2.9855	-0.0015863	531.3137315057485	96.993	0.6236	96.869	96.661	97.285	-0.12368	-0.22676	-0.0036402	NaN	152.47	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39811			85015	5354	59292	59384							0.0889637079694694
VLFEDVYEL	9	Unmodified	_VLFEDVYEL_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000477823.1_1_X:41646429-41782226:-|nuORF;ENST00000468986.6_1_X:41602925-41782241:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.7870483398438	2	563.786973	1125.55939	-1.485	-0.00083722	1.6202	0.00091343	0.13518	7.6211E-05	563.7877232377436	90.516	0.79692	90.516	90.214	91.011	0					52	18	5	0	0	0	0.33245	3	11452	11440;11452;11466		71.296	17.451	1	1660700			85016	5926	59293	59385	94099;94100;94101	94100					0.001634838007248618
VLFEDVYEL	9	Unmodified	_VLFEDVYEL_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000477823.1_1_X:41646429-41782226:-|nuORF;ENST00000468986.6_1_X:41602925-41782241:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MSMS	OPSCC_39_ClassI_Rep-2	2	563.7869262695312	2	563.786973	1125.55939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.469	1	90.453	89.953	90.953	-0.016716								0	0	0	0.17581	1	11406	11406		76.774	20.142	1				85017	5926	59293	59385	94102	94102					0.001634838007248618
VLFEDVYEL	9	Unmodified	_VLFEDVYEL_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000477823.1_1_X:41646429-41782226:-|nuORF;ENST00000468986.6_1_X:41602925-41782241:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MSMS	OPSCC_39_ClassI_Rep-2	2	563.7869262695312	2	563.786973	1125.55939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.56	1	90.543	90.043	91.043	-0.016716								0	0	0	0.1457	1	11419	11419		82.305	24.075	1				85018	5926	59293	59385	94103	94103					0.001634838007248618
VLFEDVYEL	9	Unmodified	_VLFEDVYEL_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000477823.1_1_X:41646429-41782226:-|nuORF;ENST00000468986.6_1_X:41602925-41782241:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MSMS	OPSCC_39_ClassI_Rep-3	3	563.7870483398438	2	563.786973	1125.55939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.452	1	90.466	89.966	90.966	0.013443								0	0	0	0.014381	1	11360	11360		147.69	59.516	1				85019	5926	59293	59385	94104	94104					0.001634838007248618
VLFEDVYEL	9	Unmodified	_VLFEDVYEL_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000477823.1_1_X:41646429-41782226:-|nuORF;ENST00000468986.6_1_X:41602925-41782241:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MSMS	OPSCC_39_ClassI_Rep-3	3	563.7869873046875	2	563.786973	1125.55939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.537	1	90.55	90.05	91.05	0.013443								0	0	0	0.018056	1	11372	11372		133.81	51.062	1				85020	5926	59293	59385	94105	94105					0.001634838007248618
VLFEDVYEL	9	Unmodified	_VLFEDVYEL_					0	0	0		nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000477823.1_1_X:41646429-41782226:-|nuORF;ENST00000468986.6_1_X:41602925-41782241:-|nuORF	nc|ENSG00000147044|O14936-3|CASK	nc|ENSG00000147044|O14936-3|CASK	MSMS	OPSCC_39_ClassI_Rep-3	3	563.7866821289062	2	563.786973	1125.55939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.619	1	90.63	90.13	91.13	0.011276								0	0	0	0.015085	1	11384	11384		138.24	50.065	1				85021	5926	59293	59385	94106	94106					0.001634838007248618
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	637.3245239257812	2	637.324785	1272.63502	0.40467	0.00025791	-0.55941	-0.00035653	-0.15474	-9.8621E-05	637.3244012735765	66.527	0.53387	66.527	66.392	66.926	0					25	14	2	0	0	0	3.8806E-07	2	7918	7918;7928		181.41	98.657	1	1518700			85022	9744	59294	59386	94107;94108	94107					0.009604609810139664
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	637.3273315429688	2	637.324785	1272.63502	0.41148	0.00026225	-0.29008	-0.00018487	0.1214	7.7372E-05	637.324410121301	66.87	0.67383	66.589	66.481	67.154	-0.28148					37	17	3	0	0	0	8.603E-08	1	7933	7933		190.62	105.71	1	1243700			85023	9744	59294	59386	94109	94109					0.009604609810139664
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	637.3237915039062	2	637.324785	1272.63502	-0.33464	-0.00021328	0.12672	8.0764E-05	-0.20792	-0.00013251	637.3247884007945	66.64	0.7341	66.67	66.463	67.197	0.030106					38	17	3	0	0	0	2.1039E-09	1	7850	7850		195.05	112.3	1	1909200			85024	9744	59294	59386	94110	94110					0.009604609810139664
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MSMS	OPSCC_40_ClassI_Rep-3	6	637.3245239257812	2	637.324785	1272.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.906	1	66.661	66.161	67.161	-0.24517								0	0	0	0.11846	1	7680	7680		129.42	44.26	1				85025	9744	59294	59386	94111	94111					0.009604609810139664
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENSG00000188739|ENST00000408888|RBM34;ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENSG00000188739|ENST00000408888|RBM34	ENSG00000188739|ENST00000408888|RBM34	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	637.324785	1272.63502	-1.05	-0.00066918	0.68632	0.00043741	-0.36367	-0.00023177	637.8268647817965	67.034	0.36461	66.786	66.715	67.08	-0.24839	0.1429	0.0010403	NaN	195.05	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557710			85026	9744	59294	59386							0.009604609810139664
VLFEWPQS	8	Unmodified	_VLFEWPQS_					0	0	0			REV__ENSG00000166888|ENST00000300134|STAT6	REV__ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.27716064453125	2	503.255643	1004.49673	-0.85502	-0.0004303	1.0238	0.00051525	0.1688	8.4951E-05	503.2576409748547	31.195	0.12625	31.195	31.089	31.216	0					4	2	2	0	0	0	0.027866	1	2063	2063		23.042	0	1	25215	+		85027	26074	59295	59387	94112	94112					-0.005336174768103774
VLFFFAAI	8	Unmodified	_VLFFFAAI_					0	0	0		nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.29656982421875	2	464.270564	926.526576	-0.3735	-0.00017341	1.7926	0.00083225	1.4191	0.00065885	464.27079250294094	56.385	0.75045	56.385	55.892	56.643	0					27	20	2	0	0	0	0.027866	1	6286	6286		67.327	22.796	1	249970			85028	965	59296	59388	94113	94113					0.060373662591814536
VLFFLVIMV	9	Unmodified	_VLFFLVIMV_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7535400390625	2	540.829932	1079.64531	-1.0722	-0.00057987	1.0259	0.00055481	-0.046338	-2.5061E-05	540.8302882147384	38.638	0.55938	38.414	38.111	38.671	-0.22393					32	14	3	0	0	0	0.024541	1	3189	3189		14.664	0	1	548350			85029	1440	59297	59389	94114	94114					0.10867397172523852
VLFGHFSSL	9	Unmodified	_VLFGHFSSL_					0	0	0			REV__ENSG00000065325|ENST00000262441|GLP2R	REV__ENSG00000065325|ENST00000262441|GLP2R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27447509765625	2	503.77146	1005.52837	-0.66513	-0.00033508	0.50414	0.00025397	-0.16099	-8.1103E-05	503.77142040108924	55.983	0.87193	56.081	55.744	56.616	0.097897					49	23	4	0	0	0	0.024436	1	6212	6212		38.806	6.8513	1	969670	+		85030	20306	59298	59390	94115	94115					0.025823752771316322
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.328369140625	2	523.32386	1044.63317	-0.94982	-0.00049706	0.52283	0.00027361	-0.42699	-0.00022345	523.3240099048708	79.426	2.1398	79.426	79.119	81.258	0					129	51	3	0	0	0	0.067814	3	9875	9851;9864;9875		122.18	34.422	1	1121400			85031	5444	59299	59391	94116;94117;94118	94118					0.1126349675369056
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.32421875	2	523.32386	1044.63317	-1.2339	-0.00064571	0.73958	0.00038704	-0.49427	-0.00025866	523.3241022064196	79.563	1.9431	79.391	79.15	81.093	-0.17226					113	46	4	0	0	0	0.10174	2	9839	9839;9852		110.12	33.346	1	1082600			85032	5444	59299	59391	94119;94120	94119					0.1126349675369056
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3242797851562	2	523.32386	1044.63317	-0.47554	-0.00024886	0.1703	8.9123E-05	-0.30524	-0.00015974	523.3237891430659	79.457	2.0921	79.476	79.15	81.243	0.018677					122	50	3	0	0	0	0.067814	2	9780	9780;9794		122.18	34.422	1	1272800			85033	5444	59299	59391	94121;94122	94121					0.1126349675369056
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3248291015625	2	523.32386	1044.63317	0.37959	0.00019865	-0.50314	-0.00026331	-0.12355	-6.4659E-05	523.3235426926948	79.446	1.3359	79.199	78.738	80.074	-0.2465					77	31	4	0	0	0	0.067814	3	9479	9479;9489;9503		122.18	33.346	1	1862400			85034	5444	59299	59391	94123;94124;94125	94123					0.1126349675369056
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3243408203125	2	523.32386	1044.63317	0.32612	0.00017067	-0.52574	-0.00027513	-0.19962	-0.00010446	523.3234832041636	79.359	1.1668	79.14	78.706	79.873	-0.21922					72	27	4	0	0	0	0.03849	3	9503	9492;9503;9517		134.81	35.436	1	1758200			85035	5444	59299	59391	94126;94127;94128	94127					0.1126349675369056
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3236694335938	2	523.32386	1044.63317	0.26785	0.00014017	-0.49771	-0.00026047	-0.22987	-0.0001203	523.3234893767143	79.282	1.2559	79.131	78.694	79.949	-0.15051					75	29	5	0	0	0	0.067814	3	9465	9454;9465;9476		122.18	34.422	1	2389600			85036	5444	59299	59391	94129;94130;94131	94130					0.1126349675369056
VLFGPLQAL	9	Unmodified	_VLFGPLQAL_					0	0	0		ENST00000540564.5_1_1:179322848-179323091:+|nuORF	ENST00000540564.5_1_1:179322848-179323091:+|nuORF	ENST00000540564.5_1_1:179322848-179323091:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.72247314453125	2	479.292028	956.569503	-0.65218	-0.00031259	-3.6549	-0.0017518	-4.3071	-0.0020644	479.2900380716072	28.477	0.76398	28.308	28.048	28.812	-0.16897					49	17	4	0	0	0	0.024443	1	1693	1693		26.796	0	1	542500			85037	16425	59300	59392	94132	94132					0.0894813631659872
VLFGVETHV	9	Unmodified	_VLFGVETHV_					0	0	0		ADC-ISOC1|1|fusion;ENSG00000066583|ENST00000173527|ISOC1	ADC-ISOC1|1|fusion	ADC-ISOC1|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7768249511719	2	500.776742	999.538931	-0.93774	-0.0004696	0.58229	0.0002916	-0.35545	-0.000178	500.7769231862793	61.235	1.7152	61.059	60.403	62.119	-0.1761					55	42	2	0	0	0	0.11848	2	6834	6834;6844		106.42	26.703	1	4719100			85038	30	59301	59393	94133;94134	94133					0.03914357931557788
VLFHKISN	8	Unmodified	_VLFHKISN_					0	0	0		ENST00000478192.1_1_10:70055990-70056739:-|nuORF	ENST00000478192.1_1_10:70055990-70056739:-|nuORF	ENST00000478192.1_1_10:70055990-70056739:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	479.7696228027344	2	479.279452	956.544351	-0.19122	-9.165E-05	2.563	0.0012284	2.3718	0.0011367	479.28021306971686	41.587	0.87224	41.357	40.925	41.797	-0.23029					69	22	5	0	0	0	0.027866	1	3600	3600		13.775	0	1	524500			85039	15133	59302	59394	94135	94135					0.06434081514032641
VLFHNLPSL	9	Unmodified	_VLFHNLPSL_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.3009643554688	2	520.300384	1038.58622	-0.33519	-0.0001744	0.69739	0.00036285	0.3622	0.00018845	520.3005934493665	70.455	0.55801	70.183	69.869	70.427	-0.27184					24	14	3	0	0	0	0.16468	1	8200	8200		96.19	19.416	1	1896400			85040	5610	59303	59395	94136	94136					0.06846637202556849
VLFHNLPSL	9	Unmodified	_VLFHNLPSL_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.3009643554688	2	520.300384	1038.58622	0.22706	0.00011814	-0.082767	-4.3064E-05	0.1443	7.5077E-05	520.3002582548368	70.402	0.43654	70.145	69.81	70.247	-0.25713					25	10	3	0	0	0	0.18915	1	8208	8208		90.777	14.003	1	1716200			85041	5610	59303	59395	94137	94137					0.06846637202556849
VLFHNLPSL	9	Unmodified	_VLFHNLPSL_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.300384	1038.58622	-0.40728	-0.00021191	0.62104	0.00032313	0.21376	0.00011122	520.3006022100818	70.278	0.45706	70.29	70.225	70.682	0.012421	0.11657	0.00051979	NaN	96.19	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472370			85042	5610	59303	59395							0.06846637202556849
VLFHNLPSL	9	Unmodified	_VLFHNLPSL_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	520.300384	1038.58622	0.38352	0.00019955	-0.26322	-0.00013695	0.1203	6.2592E-05	520.3000785816646	70.29	0.44061	70.076	69.772	70.213	-0.21425	-0.097917	-0.00040037	NaN	96.19	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2189600			85043	5610	59303	59395							0.06846637202556849
VLFLAVKPH	9	Unmodified	_VLFLAVKPH_					0	0	0		ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;nc|ENSG00000183010|P32322-3|PYCR1;ENST00000478402.5_1_1:226109873-226110089:-|nuORF	ENSG00000143811|ENST00000343818|PYCR2	ENSG00000143811|ENST00000343818|PYCR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.3021240234375	2	512.32112	1022.62769	-1.4765	-0.00075642	-2.6531	-0.0013593	-4.1296	-0.0021157	512.3195633181836	51.763	0.8212	51.494	51.085	51.907	-0.26903					44	21	3	0	0	0	0.024541	1	5305	5305		18.324	0.95945	1	829480			85044	5689	59304	59396	94138	94138					0.11727817961889286
VLFLGELYL	9	Unmodified	_VLFLGELYL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.8131713867188	2	533.812793	1065.61103	-0.57757	-0.00030832	0.6837	0.00036497	0.10612	5.6649E-05	533.812877015647	104.01	0.89204	104.01	103.67	104.57	0					55	21	4	0	0	0	0.088511	2	13336	13336;13359		114.59	13.374	1	504300			85045	8258	59305	59397	94139;94140	94139					0.08085272285256906
VLFLGELYL	9	Unmodified	_VLFLGELYL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.8128051757812	2	533.812793	1065.61103	-0.41025	-0.000219	0.637	0.00034004	0.22675	0.00012104	533.8128275898247	104.01	1.0144	104.01	103.57	104.58	0.0031357					45	21	4	0	0	0	0.14199	2	13299	13293;13299		101.21	32.727	1	400730			85046	8258	59305	59397	94141;94142	94142					0.08085272285256906
VLFLGELYL	9	Unmodified	_VLFLGELYL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.8137817382812	2	533.812793	1065.61103	-0.27117	-0.00014476	0.33783	0.00018034	0.066655	3.5581E-05	533.812758900687	104.03	0.82424	104.02	103.77	104.6	-0.0032196					50	19	4	0	0	0	0.14199	2	13283	13270;13283		101.21	11.043	1	503330			85047	8258	59305	59397	94143;94144	94144					0.08085272285256906
VLFLGELYL	9	Unmodified	_VLFLGELYL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.8129272460938	2	533.812793	1065.61103	0.028485	1.5206E-05	0.25001	0.00013346	0.27849	0.00014866	533.8125928762054	103.88	1.229	103.76	103.28	104.51	-0.12574					68	28	4	0	0	0	0.15889	2	12916	12908;12916		97.473	28.988	1	574130			85048	8258	59305	59397	94145;94146	94146					0.08085272285256906
VLFLGELYL	9	Unmodified	_VLFLGELYL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.8137817382812	2	533.812793	1065.61103	-0.80338	-0.00042886	0.60572	0.00032334	-0.19767	-0.00010552	533.8129979702742	103.85	0.77637	103.72	103.45	104.23	-0.12928					49	21	3	0	0	0	0.29104	2	12940	12929;12940		76.847	19.035	1	396330			85049	8258	59305	59397	94147;94148	94148					0.08085272285256906
VLFLGELYL	9	Unmodified	_VLFLGELYL_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.8131713867188	2	533.812793	1065.61103	0.00092354	4.93E-07	-0.24401	-0.00013025	-0.24308	-0.00012976	533.8125151137867	103.95	0.95638	103.78	103.55	104.51	-0.16791					41	24	3	0	0	0	0.20304	3	12911	12911;12920;12932		88.643	17.265	1	363870			85050	8258	59305	59397	94149;94150;94151	94149					0.08085272285256906
VLFLRCPSL	9	Unmodified	_VLFLRCPSL_					0	0	0			REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.306396484375	2	524.304613	1046.59467	0.14593	7.651E-05	4.472	0.0023447	4.6179	0.0024212	524.3069452935372	71.441	0.52877	71.452	71.05	71.579	0.010735					25	13	2	0	0	0	0.26966	1	8566	8566		79.713	5.4575	1	15074000	+		85051	34009	59306	59398	94152	94152					0.07323867847526344
VLFLTRLF	8	Unmodified	_VLFLTRLF_					0	0	0		ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7665100097656	2	504.81567	1007.61679	-0.067461	-3.4055E-05	-4.3128	-0.0021772	-4.3803	-0.0022112	504.81258145638736	63.76	0.3349	63.532	63.366	63.7	-0.22773					10	8	2	0	0	0	0.027866	1	7207	7207		62.978	0	1	110740			85052	10195	59307	59399	94153	94153					0.11328415587604468
VLFLVPLL	8	Unmodified	_VLFLVPLL_					0	0	0			REV__nc|ENSG00000124490|P16562-2|CRISP2	REV__nc|ENSG00000124490|P16562-2|CRISP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.2891540527344	2	457.30969	912.604826	-0.29346	-0.0001342	3.2424	0.0014828	2.949	0.0013486	457.3112307946708	93.946	0.67883	93.952	93.646	94.325	0.0059814					20	16	2	0	0	0	0.027866	1	11866	11866		33.493	0	1	426550	+		85053	36630	59308	59400	94154	94154					0.1450279884442125
VLFMDLIEL	9	Unmodified	_VLFMDLIEL_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.2867431640625	2	546.804111	1091.59367	0.32063	0.00017532	3.4187	0.0018693	3.7393	0.0020447	546.8059858201715	84.349	0.4719	84.146	83.864	84.336	-0.20329					15	10	2	0	0	0	0.022484	1	10191	10191		94.006	6.2521	1	191570			85054	6601	59309	59401	94155	94155					0.05153608687965061
VLFNKVLVN	9	Unmodified	_VLFNKVLVN_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2;ENST00000308080.9_1_18:2906258-2913399:+|nuORF	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3276977539062	2	523.32386	1044.63317	-1.2339	-0.00064571	0.73958	0.00038704	-0.49427	-0.00025866	523.3241022064196	79.563	1.9431	79.391	79.15	81.093	-0.17226					113	46	4	0	0	0	0.40179	1	9892	9892		65.803	3.6958	1	1082600			85055	4583	59310	59402	94156	94156					0.1126349675369056
VLFPDTKTL	9	Unmodified	_VLFPDTKTL_					0	0	0		ENSG00000086159|ENST00000315520|AQP6	ENSG00000086159|ENST00000315520|AQP6	ENSG00000086159|ENST00000315520|AQP6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2722778320312	2	517.30005	1032.58555	-1.226	-0.00063422	0.83983	0.00043444	-0.38618	-0.00019977	517.3003731158349	85.463	1.1721	85.488	85.119	86.291	0.025528					40	27	3	0	0	0	0.024457	1	10628	10628		29.15	0	1	217770			85056	1811	59311	59403	94157	94157					0.07055797762859584
VLFPEPLTW	9	Unmodified	_VLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3026123046875	2	551.302593	1100.59063	0.6977	0.00038465	-0.94943	-0.00052342	-0.25173	-0.00013878	551.3019885991338	97.74	1.5303	97.604	97.194	98.725	-0.1367					88	35	4	0	0	0	0.013018	8	12085	12061;12073;12085;12097;12110;12122;12133;12149		173.85	91.544	1	4092500			85057	5421	59312	59404	94158;94159;94160;94161;94162;94163;94164;94165	94160					0.04436101625447009
VLFPEPLTW	9	Unmodified	_VLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.302734375	2	551.302593	1100.59063	1.0783	0.00059445	-1.3813	-0.00076154	-0.30309	-0.00016709	551.3017516976703	97.7	1.7475	97.576	97.243	98.99	-0.12368					92	41	4	0	0	0	0.015769	8	12075	12075;12086;12098;12110;12124;12136;12146;12158		157.99	88.362	1	4304900			85058	5421	59312	59404	94166;94167;94168;94169;94170;94171;94172;94173	94166					0.04436101625447009
VLFPEPLTW	9	Unmodified	_VLFPEPLTW_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3026733398438	2	551.302593	1100.59063	-0.21843	-0.00012042	-0.2486	-0.00013705	-0.46703	-0.00025748	551.3023615367912	97.796	1.9457	97.631	97.26	99.206	-0.1652					103	45	4	0	0	0	0.012052	8	12096	12060;12072;12084;12096;12109;12119;12131;12142		228.21	116.56	1	3964700			85059	5421	59312	59404	94174;94175;94176;94177;94178;94179;94180;94181	94177					0.04436101625447009
VLFPFERV	8	Unmodified	_VLFPFERV_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|3|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|3|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7872619628906	2	503.789653	1005.56475	-0.59339	-0.00029895	-3.8425	-0.0019358	-4.4359	-0.0022348	503.78766809417283	54.415	1.0401	54.415	54.043	55.083	0					80	29	4	0	0	0	0.65272	1	5924	5924		71.378	5.4805	1	11352000	+		85060	36231	59313	59405	94182	94182					0.0621925217384387
VLFPFERV	8	Unmodified	_VLFPFERV_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|3|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|3|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7875671386719	2	503.789653	1005.56475	-0.12215	-6.154E-05	-4.0447	-0.0020377	-4.1669	-0.0020992	503.78756264105124	54.543	1.1477	54.392	53.984	55.132	-0.15036					86	32	4	0	0	0	0.59392	3	5911	5911;5923;5956		76.847	15.875	1	11879000	+		85061	36231	59313	59405	94183;94184;94185	94183					0.0621925217384387
VLFPMDLAL	9	Oxidation (M)	_VLFPM(Oxidation (M))DLAL_		VLFPM(1)DLAL		VLFPM(80)DLAL	0	0	1		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.782470703125	2	517.783179	1033.5518	-1.5255	-0.0007899	0.89963	0.00046581	-0.62591	-0.00032408	517.7834619898512	91.084	0.96528	91.084	90.719	91.685	0					50	22	3	0	0	0	0.26797	2	11525	11525;11537		79.939	14.136	1	667450			85062	6248	59314	59406	94186;94187	94186		261			0.036370529994201206
VLFPMDLAL	9	Oxidation (M)	_VLFPM(Oxidation (M))DLAL_		VLFPM(1)DLAL		VLFPM(89)DLAL	0	0	1		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.7825927734375	2	517.783179	1033.5518	-0.41755	-0.0002162	-0.26566	-0.00013756	-0.68321	-0.00035376	517.7828968580611	91.166	1.006	91.153	90.785	91.791	-0.012383					46	23	3	0	0	0	0.20304	1	11502	11502		88.643	17.265	1	534910			85063	6248	59314	59406	94188	94188		261			0.036370529994201206
VLFPMDLAL	9	Oxidation (M)	_VLFPM(Oxidation (M))DLAL_		VLFPM(1)DLAL		VLFPM(80)DLAL	0	0	1		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7821655273438	2	517.783179	1033.5518	-0.10599	-5.4878E-05	-0.77876	-0.00040323	-0.88474	-0.00045811	517.7826689548161	91.143	1.0933	91.154	90.783	91.877	0.011276					45	25	3	0	0	0	0.26797	1	11460	11460		79.939	29.915	1	734190			85064	6248	59314	59406	94189	94189		261			0.036370529994201206
VLFPNLKTV	9	Unmodified	_VLFPNLKTV_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.8181762695312	2	515.81841	1029.62227	0.45225	0.00023328	-0.60306	-0.00031107	-0.15081	-7.7791E-05	515.817937587727	67.552	1.076	67.296	66.952	68.028	-0.25516					59	25	4	0	0	0	0.016584	3	7773	7763;7773;7785		200.16	79.536	1	3019900			85065	7953	59315	59407	94190;94191;94192	94191					0.10864094379394373
VLFPNLKTV	9	Unmodified	_VLFPNLKTV_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.8182983398438	2	515.81841	1029.62227	-0.11732	-6.0518E-05	-0.062402	-3.2188E-05	-0.17972	-9.2705E-05	515.8182357554878	67.473	1.0719	67.239	66.929	68.001	-0.23376					64	25	4	0	0	0	0.016758	2	7775	7775;7787		153.04	65.282	1	3161900			85066	7953	59315	59407	94193;94194	94193					0.10864094379394373
VLFPNLKTV	9	Unmodified	_VLFPNLKTV_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.8179931640625	2	515.81841	1029.62227	-0.33902	-0.00017487	0.23437	0.00012089	-0.10464	-5.3978E-05	515.8183725509401	67.416	0.99084	67.178	66.919	67.909	-0.23814					56	23	4	0	0	0	0.043667	3	7776	7753;7764;7776		131.03	43.277	1	3000400			85067	7953	59315	59407	94195;94196;94197	94197					0.10864094379394373
VLFPNLKTV	9	Unmodified	_VLFPNLKTV_					0	0	0		ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	ENSG00000169594|ENST00000345382|BNC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.81841	1029.62227	-0.4715	-0.00024321	-0.3916	-0.000202	-0.86311	-0.00044521	515.8181184383037	67.275	0.40016	67.299	67.071	67.471	0.023911	0.047305	-0.00022965	NaN	200.16	25	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1242300			85068	7953	59315	59407							0.10864094379394373
VLFPSNGN	8	Unmodified	_VLFPSNGN_					0	0	0			REV__ENST00000282120.6_1_2:85547765-85547996:-|nuORF	REV__ENST00000282120.6_1_2:85547765-85547996:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.218505859375	2	424.21906	846.423567	-0.22547	-9.5648E-05	-1.0525	-0.00044649	-1.278	-0.00054214	424.2185251046166	98.415	2.1934	98.415	97.594	99.787	0					127	50	5	0	0	0	0.95679	1	12628	12628		44.117	5.3107	1	7415800	+		85069	29894	59316	59408	94198	94198					-0.005787461994259502
VLFPTFIAGI	10	Unmodified	_VLFPTFIAGI_					0	0	0		ENST00000325327.3_1_19:2429156-2429273:-|nuORF	ENST00000325327.3_1_19:2429156-2429273:-|nuORF	ENST00000325327.3_1_19:2429156-2429273:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.2766723632812	2	539.320786	1076.62702	-0.23879	-0.00012878	-4.0372	-0.0021774	-4.276	-0.0023062	539.3183945270101	61.221	0.7612	61.221	60.921	61.682	0					34	15	3	0	0	0	0.03519	1	7052	7052		55.504	7.5886	1	1133800			85070	12270	59317	59409	94199	94199					0.0917697852216861
VLFPVSLML	9	Unmodified	_VLFPVSLML_					0	0	0			REV__SSTR1|p.V181Rfs*69|1|0.18|ENSG00000139874|chr14:38209924-38209925|-/T|frameshift_variant	REV__SSTR1|p.V181Rfs*69|1|0.18|ENSG00000139874|chr14:38209924-38209925|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8037414550781	2	509.803914	1017.59328	0.28678	0.0001462	-0.72585	-0.00037004	-0.43907	-0.00022384	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.97516	1	10286	10286		25.45	0	1	3746700	+		85071	23969	59318	59410	94200	94200					0.08518233758763927
VLFQGTPDL	9	Unmodified	_VLFQGTPDL_					0	0	0			REV__ENST00000467699.5_1_17:7605976-7606801:+|nuORF	REV__ENST00000467699.5_1_17:7605976-7606801:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.2700500488281	2	495.26875	988.522947	0.605	0.00029964	2.4917	0.001234	3.0966	0.0015337	495.2699086369687	39.752	0.63945	39.752	39.459	40.099	0					32	17	2	0	0	0	0.23085	1	3443	3443		84.916	4.4609	1	2072600	+		85072	24094	59319	59411	94201	94201					0.028226516946688207
VLFQGTPDL	9	Unmodified	_VLFQGTPDL_					0	0	0			REV__ENST00000467699.5_1_17:7605976-7606801:+|nuORF	REV__ENST00000467699.5_1_17:7605976-7606801:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.27044677734375	2	495.26875	988.522947	-0.9545	-0.00047274	4.0791	0.0020203	3.1246	0.0015475	495.27068300468716	39.819	1.0202	39.707	39.398	40.418	-0.11223					43	27	2	0	0	0	0.32811	1	3436	3436		71.877	0.58177	1	1962000	+		85073	24094	59319	59411	94202	94202					0.028226516946688207
VLFQLPPKP	9	Unmodified	_VLFQLPPKP_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.2412109375	2	519.820953	1037.62735	-0.035337	-1.8369E-05	-3.9193	-0.0020374	-3.9547	-0.0020557	519.8188070054576	76.455	0.53022	76.467	76.205	76.735	0.011635					20	12	2	0	0	0	0.024487	1	9321	9321		11.511	0	1	145870	+		85074	29019	59320	59412	94203	94203					0.11004398242039315
VLFSDLIEL	9	Unmodified	_VLFSDLIEL_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2798461914062	2	524.799883	1047.58521	-0.28762	-0.00015094	1.2893	0.0006766	1.0016	0.00052566	524.8004912247364	78.071	1.45	78.087	77.821	79.271	0.015907					62	34	3	0	0	0	0.024354	1	9690	9690		30.504	1.3541	1	319420			85075	5555	59321	59413	94204	94204					0.06332378042998243
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	592.8681030273438	2	592.8681	1183.72165	-1.7622	-0.0010448	2.5215	0.0014949	0.75929	0.00045016	592.8694402767204	102.66	1.1678	102.66	102.35	103.51	0					69	27	4	0	0	0	0.00050823	5	13159	13136;13146;13159;13172;13186		152.47	39.451	1	3198100			85076	8212	59322	59414	94205;94206;94207;94208;94209	94207					0.13713492273518568
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	592.8682250976562	2	592.8681	1183.72165	-0.89357	-0.00052977	1.4562	0.00086331	0.56259	0.00033354	592.8687996697352	102.66	1.1608	102.67	102.28	103.44	0.0065231					72	27	5	0	0	0	0.00027003	3	13107	13095;13107;13120		161.9	55.932	1	2942200			85077	8212	59322	59414	94210;94211;94212	94211					0.13713492273518568
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	592.8681030273438	2	592.8681	1183.72165	0.2989	0.00017721	0.54938	0.00032571	0.84827	0.00050291	592.8681959636573	102.72	1.5659	102.71	102.28	103.85	-0.0046082					82	37	5	0	0	0	0.00038852	5	13078	13066;13078;13091;13105;13117		157.21	40.822	1	3088200			85078	8212	59322	59414	94213;94214;94215;94216;94217	94214					0.13713492273518568
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	593.3453369140625	2	592.8681	1183.72165	-0.26416	-0.00015661	0.30065	0.00017824	0.036485	2.1631E-05	592.8680015378122	102.58	0.51749	102.41	102.2	102.72	-0.17178					33	11	4	0	0	0	0.024793	1	12723	12723		56.721	12.604	1	523730			85079	8212	59322	59414	94218	94218					0.13713492273518568
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.8681	1183.72165	-0.18819	-0.00011157	0.47776	0.00028325	0.28957	0.00017168	592.86799906213	102.51	0.6378	102.39	102.07	102.71	-0.1293	-0.14773	-0.00070591	NaN	161.9	37	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542510			85080	8212	59322	59414							0.13713492273518568
VLFSSPPVILL	11	Unmodified	_VLFSSPPVILL_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	592.8681	1183.72165	-0.6937	-0.00041127	0.88426	0.00052425	0.19056	0.00011298	592.868353411333	102.49	0.52523	102.36	102.15	102.67	-0.12666	-0.172	-0.00022391	NaN	161.9	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499580			85081	8212	59322	59414							0.13713492273518568
VLFVDKVE	8	Unmodified	_VLFVDKVE_					0	0	0			REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	474.77392578125	2	474.773668	947.532783	1.1535	0.00054764	-1.3124	-0.00062307	-0.15888	-7.5433E-05	474.77297582327463	99.198	1.0987	99.198	98.647	99.746	0					64	24	3	0	0	0	1.0239	1	12705	12705		33.516	0	1	2194500	+		85082	35240	59323	59415	94219	94219					0.056918397000458754
VLFVIFNSL	9	Unmodified	_VLFVIFNSL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7896118164062	2	526.312961	1050.61137	0.0099025	5.2118E-06	3.0157	0.0015872	3.0256	0.0015924	526.3143124951429	77.224	1.2424	76.962	75.785	77.028	-0.26202					48	30	2	0	0	0	0.024427	1	9051	9051		34.173	9.9698	1	340180			85083	7239	59324	59416	94220	94220					0.08808692005140983
VLFVVDAYEP	10	Unmodified	_VLFVVDAYEP_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.84375	2	576.30279	1150.59103	-0.19996	-0.00011524	-0.18783	-0.00010825	-0.3878	-0.00022349	576.3026123815831	90.188	0.48753	90.202	89.964	90.452	0.013435					15	11	2	0	0	0	0.03519	1	11336	11336		42.396	0	1	53666	+		85084	28706	59325	59417	94221	94221					0.0217547655463477
VLFVVFPVK	9	Unmodified	_VLFVVFPVK_					0	0	0			REV__OR4C12|p.T25P|1|0.11|ENSG00000221954|chr11:49982429-49982429|T/G|missense_variant	REV__OR4C12|p.T25P|1|0.11|ENSG00000221954|chr11:49982429-49982429|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.3135986328125	2	524.333696	1046.65284	-0.52591	-0.00027575	3.543	0.0018577	3.0171	0.001582	524.3353180380922	73.568	0.29165	73.297	73.129	73.421	-0.27126					12	7	3	0	0	0	0.024535	1	8959	8959		18.324	0	1	289180	+		85085	37313	59326	59418	94222	94222					0.13137872764446
VLFWFQTSL	9	Unmodified	_VLFWFQTSL_					0	0	0		ENST00000421109.6_1_15:96881263-96881344:+|nuORF	ENST00000421109.6_1_15:96881263-96881344:+|nuORF	ENST00000421109.6_1_15:96881263-96881344:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.8071899414062	2	570.808042	1139.60153	0.17838	0.00010182	-2.7693	-0.0015807	-2.5909	-0.0014789	570.8062420139803	74.289	0.88057	74.03	73.78	74.661	-0.25887					56	20	4	0	0	0	0.31037	1	9053	9053		74.255	2.3776	1	3552700			85086	13992	59327	59419	94223	94223					0.03731503999756569
VLFWFQTSL	9	Unmodified	_VLFWFQTSL_					0	0	0		ENST00000421109.6_1_15:96881263-96881344:+|nuORF	ENST00000421109.6_1_15:96881263-96881344:+|nuORF	ENST00000421109.6_1_15:96881263-96881344:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.807861328125	2	570.808042	1139.60153	-1.1434	-0.00065268	-1.6665	-0.00095127	-2.81	-0.001604	570.8069424010596	73.973	0.9367	73.983	73.753	74.69	0.0096512					64	21	4	0	0	0	0.35646	1	8971	8971		68.787	6.6794	1	3712400			85087	13992	59327	59419	94224	94224					0.03731503999756569
VLFYDPYL	8	Unmodified	_VLFYDPYL_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.7493286132812	2	515.268219	1028.52188	-1.0754	-0.00055414	-2.5378	-0.0013077	-3.6133	-0.0018618	515.2668055585686	80.351	0.5049	80.199	79.966	80.471	-0.15169					25	11	3	0	0	0	0.027866	1	9937	9937		37.028	0	1	321220			85088	6762	59328	59420	94225	94225					0.008764373257463376
VLFYDPYL	8	Unmodified	_VLFYDPYL_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.268219	1028.52188	-0.64079	-0.00033018	-2.66	-0.0013706	-3.3008	-0.0017008	515.26661821582	80.181	0.58913	80.181	79.911	80.5	0	0.099903	0.00060799	NaN	37.028	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415860			85089	6762	59328	59420							0.008764373257463376
VLFYDPYL	8	Unmodified	_VLFYDPYL_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.268219	1028.52188	0.17585	9.0612E-05	-4.4254	-0.0022803	-4.2495	-0.0021896	515.2659623581699	80.267	0.49973	80.029	79.747	80.246	-0.23784	-0.052107	-0.0012113	NaN	37.028	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186280			85090	6762	59328	59420							0.008764373257463376
VLFYDPYL	8	Unmodified	_VLFYDPYL_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.268219	1028.52188	0.29155	0.00015023	-4.1608	-0.0021439	-3.8692	-0.0019937	515.2658955345642	80.137	0.54333	79.925	79.751	80.294	-0.21205	-0.15624	-0.00093863	NaN	37.028	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140960			85091	6762	59328	59420							0.008764373257463376
VLFYDPYL	8	Unmodified	_VLFYDPYL_					0	0	0		ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1;ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENSG00000159692|ENST00000382952|CTBP1	ENSG00000159692|ENST00000382952|CTBP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.268219	1028.52188	0.04768	2.4568E-05	-3.7898	-0.0019528	-3.7421	-0.0019282	515.2661255827428	80.186	0.74737	80.04	79.785	80.532	-0.146	-0.041661	-0.00055633	NaN	37.028	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196090			85092	6762	59328	59420							0.008764373257463376
VLGAEMPLTL	10	Oxidation (M)	_VLGAEM(Oxidation (M))PLTL_		VLGAEM(1)PLTL		VLGAEM(77)PLTL	0	0	1			REV__ENSG00000087253|ENST00000262134|LPCAT2	REV__ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2879028320312	2	530.291368	1058.56818	-0.78729	-0.00041749	-2.2836	-0.001211	-3.0709	-0.0016285	530.2899128369015	95.457	0.64204	95.457	95.179	95.821	0					43	14	4	0	0	0	0.60198	1	12162	12162		76.774	7.9873	1	412950	+		85093	20793	59329	59421	94226	94226		638			0.04124134165522264
VLGAEMPLTL	10	Oxidation (M)	_VLGAEM(Oxidation (M))PLTL_					0	0	1			REV__ENSG00000087253|ENST00000262134|LPCAT2	REV__ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	530.291368	1058.56818	-0.78729	-0.00041749	-2.2836	-0.001211	-3.0709	-0.0016285	530.2899128369015	95.457	0.64204	95.457	95.179	95.821	0	0.042121	0.00070623	NaN	76.774	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412950	+		85094	20793	59329	59421				638			0.04124134165522264
VLGAEMPLTL	10	Oxidation (M)	_VLGAEM(Oxidation (M))PLTL_					0	0	1			REV__ENSG00000087253|ENST00000262134|LPCAT2	REV__ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.291368	1058.56818	-0.077877	-4.1298E-05	-2.9241	-0.0015506	-3.002	-0.0015919	530.2896868101938	95.326	0.64099	95.329	95.088	95.729	0.0033722	-0.085226	2.691E-05	NaN	76.774	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390070	+		85095	20793	59329	59421				638			0.04124134165522264
VLGAEMPLTL	10	Oxidation (M)	_VLGAEM(Oxidation (M))PLTL_					0	0	1			REV__ENSG00000087253|ENST00000262134|LPCAT2	REV__ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.291368	1058.56818	0.25304	0.00013418	-3.451	-0.00183	-3.198	-0.0016959	530.2893938940831	95.454	0.68765	95.458	95.14	95.827	0.0041199	0.043106	-0.00053189	NaN	76.774	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406370	+		85096	20793	59329	59421				638			0.04124134165522264
VLGAKQRA	8	Unmodified	_VLGAKQRA_					0	0	0		ENST00000498596.5_1_1:171557633-171560983:+|nuORF	ENST00000498596.5_1_1:171557633-171560983:+|nuORF	ENST00000498596.5_1_1:171557633-171560983:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	422.25592041015625	2	421.763969	841.513385	0.49481	0.00020869	0.28565	0.00012048	0.78046	0.00032917	421.7630126396016	21.764	0.3379	21.587	21.35	21.688	-0.17721					8	6	2	0	0	0	0.027866	1	721	721		19.36	0	1	8374.6			85097	15625	59330	59422	94227	94227					0.08628928199800612
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.3098754882812	2	524.307875	1046.6012	0.46841	0.00024559	-2.6816	-0.001406	-2.2132	-0.0011604	524.3063657963678	73.879	0.51696	73.879	73.698	74.215	0					20	11	2	0	0	0	0.086035	2	9038	9038;9049		115.49	27.798	1	706000			85098	2459	59331	59423	94228;94229	94228					0.07976084279903262
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.3092651367188	2	524.307875	1046.6012	-0.039101	-2.0501E-05	-2.4371	-0.0012778	-2.4762	-0.0012983	524.3064593623842	74.224	0.49989	73.965	73.744	74.244	-0.25887					21	11	2	0	0	0	0.03201	1	9049	9049		139.97	33.555	1	771200			85099	2459	59331	59423	94230	94230					0.07976084279903262
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.3092651367188	2	524.307875	1046.6012	-0.46255	-0.00024252	-1.7022	-0.00089246	-2.1647	-0.001135	524.3068333939331	73.921	0.60165	73.931	73.753	74.355	0.0096512					23	13	2	0	0	0	0.086035	1	8966	8966		115.49	19.304	1	790390			85100	2459	59331	59423	94231	94231					0.07976084279903262
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.307875	1046.6012	0.15599	8.1787E-05	-2.7236	-0.001428	-2.5676	-0.0013462	524.306523360154	73.841	0.20584	73.651	73.478	73.683	-0.19027	-0.20572	-0.00043103	NaN	139.97	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445020			85101	2459	59331	59423							0.07976084279903262
VLGERIVIV	9	Unmodified	_VLGERIVIV_					0	0	0		ENSG00000175946|ENST00000684634|KLHL38	ENSG00000175946|ENST00000684634|KLHL38	ENSG00000175946|ENST00000684634|KLHL38	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.3236389160156	2	499.32386	996.633166	1.7703	0.00088394	-2.3345	-0.0011657	-0.56427	-0.00028175	499.3226952178435	63.697	1.7933	63.751	63.41	65.203	0.054104					115	48	4	0	0	0	0.29158	1	7409	7409		76.774	5.4784	1	32941000			85102	8601	59332	59424	94232	94232					0.1347149675370929
VLGFNLVAR	9	Unmodified	_VLGFNLVAR_					0	0	0			REV__ENST00000366919.6_1_6:161505579-161507421:+|nuORF	REV__ENST00000366919.6_1_6:161505579-161507421:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.8034362792969	2	494.800552	987.58655	-0.079634	-3.9403E-05	-1.2601	-0.00062348	-1.3397	-0.00066288	494.80006586111733	31.931	1.2488	31.931	31.131	32.379	0					83	30	4	0	0	0	0.024523	1	2191	2191		15.642	0	1	1839100	+		85103	30993	59333	59425	94233	94233					0.09226056922420867
VLGFVNPLN	9	Unmodified	_VLGFVNPLN_					0	0	0			REV__FBXO7|p.D328N|1|0.26|ENSG00000100225|chr22:32493119-32493119|G/A|missense_variant	REV__FBXO7|p.D328N|1|0.26|ENSG00000100225|chr22:32493119-32493119|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7869873046875	2	486.779285	971.544017	-0.63318	-0.00030822	-2.8483	-0.0013865	-3.4815	-0.0016947	486.7779475072858	45.375	1.0952	45.226	44.73	45.825	-0.1488					71	31	3	0	0	0	0.024412	1	4316	4316		17.365	0	1	1752300	+		85104	36029	59334	59426	94234	94234					0.0571066179418267
VLGGVSCGLR	10	Unmodified	_VLGGVSCGLR_					0	0	0		ENST00000291041.5_1_16:67961537-67962017:+|nuORF	ENST00000291041.5_1_16:67961537-67962017:+|nuORF	ENST00000291041.5_1_16:67961537-67962017:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7671813964844	2	480.768394	959.522236	-0.45381	-0.00021818	-3.4599	-0.0016634	-3.9137	-0.0018816	480.7666361479519	36.568	1.8582	36.525	35.326	37.184	-0.042454					108	49	3	0	0	0	0.64538	1	2866	2866		71.877	4.3838	1	5699900			85105	11791	59335	59427	94235	94235					0.04085533773957195
VLGHFGVNE	9	Unmodified	_VLGHFGVNE_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.787353515625	2	486.250892	970.48723	-0.57874	-0.00028141	0.74255	0.00036107	0.16382	7.9656E-05	486.25113776278556	45.142	0.81508	45.142	44.898	45.714	0					33	23	2	0	0	0	0.024325	1	4334	4334		50.025	22.142	1	510080			85106	8466	59336	59428	94236	94236					0.0008061423767458109
VLGHFQLL	8	Unmodified	_VLGHFQLL_					0	0	0			REV__ENSG00000101000|ENST00000216968|PROCR	REV__ENSG00000101000|ENST00000216968|PROCR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	463.7507019042969	2	463.776545	925.538538	-0.35244	-0.00016345	-1.3674	-0.00063415	-1.7198	-0.0007976	463.7750461672715	49.913	0.18063	49.913	49.805	49.986	0					10	4	3	0	0	0	0.027866	1	5180	5180		21.702	0	1	77624	+		85107	21174	59337	59429	94237	94237					0.07278983002368022
VLGIEDMIRA	10	Unmodified	_VLGIEDMIRA_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8265991210938	2	558.807716	1115.60088	-0.33882	-0.00018933	4.28	0.0023917	3.9412	0.0022024	558.8101495967077	102.06	1.1562	102.07	101.74	102.89	0.0073395					32	27	2	0	0	0	0.03519	1	13045	13045		34.173	0	1	91879			85108	9029	59338	59430	94238	94238					0.047703412883720375
VLGIKEVK	8	Unmodified	_VLGIKEVK_					0	0	0			REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	REV__NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.2921142578125	2	443.292028	884.569503	1.2385	0.00054902	-1.4195	-0.00062926	-0.18101	-8.0238E-05	443.2913950271453	37.021	1.4543	37.021	36.648	38.102	0					104	39	5	0	0	0	0.21202	2	2963	2963;3014		138.48	7.4482	1	18914000	+		85109	25714	59339	59431	94239;94240	94239					0.12260136316604076
VLGILSDDTE	10	Unmodified	_VLGILSDDTE_					0	0	0		ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7871704101562	2	531.271687	1060.52882	-0.22187	-0.00011787	3.4183	0.0018161	3.1965	0.0016982	531.2742179298716	56.893	0.61715	56.691	56.092	56.71	-0.20209					19	15	2	0	0	0	0.03519	1	6183	6183		30.504	0	1	252440			85110	9807	59340	59432	94241	94241					0.0009770541569196212
VLGIRPCSL	9	Unmodified	_VLGIRPCSL_					0	0	0			REV__nc|ENSG00000144837|Q53H76-4|PLA1A	REV__nc|ENSG00000144837|Q53H76-4|PLA1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.281982421875	2	479.281137	956.547722	0.17719	8.4923E-05	-1.3877	-0.00066508	-1.2105	-0.00058016	479.27978105577375	81.39	0.93456	81.39	81.178	82.113	0					30	22	2	0	0	0	0.72875	1	10133	10133		44.117	0	1	1158600	+		85111	24367	59341	59433	94242	94242					0.06771008296379932
VLGKAKHI	8	Unmodified	_VLGKAKHI_					0	0	0			REV__ENSG00000099995|ENST00000215793|SF3A1	REV__ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	433.2564392089844	2	433.284537	864.554522	0.097756	4.2356E-05	-3.0896	-0.0013387	-2.9919	-0.0012963	433.2846343103691	97.616	0.44409	97.616	97.37	97.814	0					12	9	2	0	0	0	0.027866	1	12468	12468		35.201	5.3592	1	33498	+		85112	21030	59342	59434	94243	94243					0.11682689239262345
VLGKAKHI	8	Unmodified	_VLGKAKHI_					0	0	0			REV__ENSG00000099995|ENST00000215793|SF3A1	REV__ENSG00000099995|ENST00000215793|SF3A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	433.284537	864.554522	0.5927	0.00025681	-5.3842	-0.0023329	-4.7915	-0.0020761	433.2843193617298	97.518	0.26752	97.527	97.415	97.683	0.0089111	-0.044766	-0.00074045	NaN	35.201	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36490	+		85113	21030	59342	59434							0.11682689239262345
VLGKIEKV	8	Unmodified	_VLGKIEKV_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.2920227050781	2	443.292028	884.569503	0.2804	0.0001243	-0.44662	-0.00019798	-0.16622	-7.3684E-05	443.2918371506299	36.873	1.3264	36.809	36.47	37.796	-0.063389					100	35	5	0	0	0	0.68164	1	2987	2987		68.787	12.353	1	17693000			85114	10155	59343	59435	94244	94244					0.12260136316604076
VLGKRLLGL	9	Unmodified	_VLGKRLLGL_					0	0	0			REV__ENST00000583277.1_1_17:7468610-7469096:+|nuORF	REV__ENST00000583277.1_1_17:7468610-7469096:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.79803466796875	2	484.834394	967.654236	1.8427	0.00089342	1.3783	0.00066825	3.221	0.0015617	484.83481332143214	59.176	0.14043	58.989	58.936	59.076	-0.18705					6	3	2	0	0	0	0.024487	1	6718	6718		24.203	6.8378	1	100520	+		85115	35551	59344	59436	94245	94245					0.1691150685322782
VLGLSLWALL	10	Unmodified	_VLGLSLWALL_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2586669921875	2	542.841885	1083.66922	-0.51457	-0.00027933	-3.788	-0.0020563	-4.3026	-0.0023356	542.839630505402	47.845	0.96349	47.658	47.123	48.086	-0.18684					50	25	3	0	0	0	0.03519	1	4681	4681		30.504	0	1	457210			85116	7998	59345	59437	94246	94246					0.13072953930532094
VLGLTFKS	8	Unmodified	_VLGLTFKS_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|302|3|anti-sense;L1PA2_dup2825|chr9:94089083-94095103:-|1.1634730141956713|0.1800513114118117|2.69|510.0|247|2|anti-sense;chr5:90929313-90965415|334|14.64|0.23|5.99|+|2|TE_info:L1PA2,L1PA2_dup1646,L1,LINE,donor,-,90923631,90929313|None,ADGRV1|22;chr2:222572022-222586338|114|12.89|0.25|5.66|-|1|TE_info:L1PA5,L1PA5_dup1583,L1,LINE,donor,+,222586338,222590526|FARSB,None|21;chr15:53523322-53684228|237|21.71|0.04|9.0|-|1|TE_info:L1PA3,L1PA3_dup9610,L1,LINE,donor,+,53684228,53690229|WDR72,None|10;chr15:53523322-53540662|353|34.83|0.17|7.69|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|10;chr1:89418355-89420191|233|12.99|0.01|10.41|+|2|TE_info:L1PA2,L1PA2_dup101,L1,LINE,donor,-,89412580,89418355|None,GBP1P1|11;chr1:245764149-245816795|230|20.85|0.05|8.85|-|0|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|10	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|302|3|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|302|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	432.28240966796875	2	432.763104	863.511654	0.037953	1.6424E-05	0.72325	0.000313	0.76121	0.00032942	432.76316339837376	52.109	0.36687	52.109	51.906	52.273	0					14	9	2	0	0	0	0.027866	1	5542	5542		50.025	9.4519	1	48425			85117	281	59346	59438	94247	94247					0.07443874391185545
VLGLTSIFGN	10	Unmodified	_VLGLTSIFGN_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3;REV__ITPR2|p.N1546Ifs*19|1|0.14|ENSG00000123104|chr12:26561946-26561946|T/-|frameshift_variant;REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2737121582031	2	510.78985	1019.56515	-0.0046682	-2.3844E-06	-3.3692	-0.001721	-3.3739	-0.0017234	510.7887142238654	90.259	0.28749	90.272	90.121	90.409	0.013443					9	6	2	0	0	0	0.03519	1	11346	11346		19.997	0	1	48522	+		85118	20986;22678;24742	59347	59439	94248	94248					0.05614627103057046
VLGMSNGII	9	Unmodified	_VLGMSNGII_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.264404296875	2	452.252046	902.489538	0.027281	1.2338E-05	0.099243	4.4883E-05	0.12652	5.7221E-05	452.2520183322227	33.233	0.72971	33.001	32.503	33.232	-0.23107					30	17	2	0	0	0	0.024418	1	2353	2353		13.775	6.085	1	183480	+		85119	27801	59348	59440	94249	94249					0.0343932665111879
VLGMSNGII	9	Unmodified	_VLGMSNGII_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	452.252046	902.489538	-0.32829	-0.00014847	3.3558	0.0015177	3.0275	0.0013692	452.25361927893897	33.116	0.23327	33.116	32.941	33.174	0	0.093899	0.0024064	NaN	13.775	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132420	+		85120	27801	59348	59440							0.0343932665111879
VLGMSNGII	9	Unmodified	_VLGMSNGII_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	452.252046	902.489538	-0.46996	-0.00021254	3.661	0.0016557	3.191	0.0014431	452.25377897569376	32.98	0.19298	32.987	32.85	33.043	0.0066261	-0.035748	0.0026825	NaN	13.775	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86945	+		85121	27801	59348	59440							0.0343932665111879
VLGMVLHV	8	Unmodified	_VLGMVLHV_					0	0	0		ENST00000265362.8_1_7:83606489-83610685:-|nuORF	ENST00000265362.8_1_7:83606489-83610685:-|nuORF	ENST00000265362.8_1_7:83606489-83610685:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.24639892578125	2	434.259674	866.504795	0.4017	0.00017444	1.9216	0.00083449	2.3233	0.0010089	434.2611494405335	24.116	0.27172	24.194	23.958	24.23	0.078344					6	5	2	0	0	0	0.027866	1	961	961		16.705	0.23182	1	10650			85122	11591	59349	59441	94250	94250					0.06620238238974707
VLGNLTIIYI	10	Unmodified	_VLGNLTIIYI_					0	0	0		ENSG00000180785|ENST00000396952|OR51E1	ENSG00000180785|ENST00000396952|OR51E1	ENSG00000180785|ENST00000396952|OR51E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8157348632812	2	559.844625	1117.6747	-0.31509	-0.0001764	-0.39976	-0.0002238	-0.71485	-0.00040021	559.8459173991529	80.723	0.28203	80.577	80.45	80.733	-0.146					10	6	2	0	0	0	0.03519	1	9678	9678		56.721	1.9447	1	92759			85123	8997	59350	59442	94251	94251					0.12056632722351424
VLGNRYKQR	9	Unmodified	_VLGNRYKQR_					0	0	0		ADCYAP1|p.K160N|1|0.06|ENSG00000141433|chr18:909584-909584|G/C|missense_variant	ADCYAP1|p.K160N|1|0.06|ENSG00000141433|chr18:909584-909584|G/C|missense_variant	ADCYAP1|p.K160N|1|0.06|ENSG00000141433|chr18:909584-909584|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3309326171875	2	567.330539	1132.64652	-0.10765	-6.1074E-05	-1.2583	-0.00071388	-1.366	-0.00077496	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.0365	1	10800	10800		12.959	2.0936	1	5896300			85124	33	59351	59443	94252	94252					0.08550747585650242
VLGNTHVL	8	Unmodified	_VLGNTHVL_					0	0	0		nc|ENSG00000182853|Q7Z5L0-3|VMO1	nc|ENSG00000182853|Q7Z5L0-3|VMO1	nc|ENSG00000182853|Q7Z5L0-3|VMO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.3025207519531	2	426.750527	851.486502	0.75875	0.0003238	-2.4445	-0.0010432	-1.6857	-0.00071939	426.7496818467496	68.209	0.35889	67.979	67.875	68.234	-0.23048					10	8	2	0	0	0	0.027866	1	7872	7872		25.45	0	1	48946			85125	18571	59352	59444	94253	94253					0.054818195886127796
VLGPEAALARG	11	Unmodified	_VLGPEAALARG_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.304443359375	2	527.306198	1052.59784	0.57506	0.00030323	-3.3221	-0.0017518	-2.7471	-0.0014485	527.3045102353642	98.07	1.4368	97.933	97.377	98.814	-0.13625					64	33	3	0	0	0	1.0521	1	12167	12167		24.519	0	1	643280			85126	8888	59353	59445	94254	94254					0.07364834225882078
VLGPHSDEPW	10	Unmodified	_VLGPHSDEPW_					0	0	0			REV__ENST00000498794.1_1_3:49054806-49055376:-|nuORF	REV__ENST00000498794.1_1_3:49054806-49055376:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.7698974609375	2	568.772188	1135.52982	-0.46185	-0.00026269	-3.5485	-0.0020183	-4.0103	-0.002281	568.7699956205862	72.382	0.79871	72.184	71.869	72.667	-0.19811					34	18	3	0	0	0	1.0665	1	8479	8479		37.159	1.5408	1	956560	+		85127	33547	59354	59446	94255	94255					-0.03252035424770838
VLGPILVSG	9	Unmodified	_VLGPILVSG_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.3030090332031	2	427.770929	853.527304	0.8375	0.00035826	-0.19533	-8.3556E-05	0.64217	0.0002747	427.77066221296406	68.304	0.44003	68.073	67.917	68.357	-0.23048					16	10	2	0	0	0	0.024325	1	7896	7896		40.573	8.6178	1	85840	+		85128	23233	59355	59447	94256	94256					0.09468160908238588
VLGPLLQIG	9	Unmodified	_VLGPLLQIG_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|236|3|anti-sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|236|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.7654724121094	2	455.292028	908.569503	0.86979	0.00039601	-1.6234	-0.0007391	-0.75356	-0.00034309	455.2910763865293	88.598	0.6378	88.598	88.34	88.978	0					26	14	3	0	0	0	0.024541	1	11196	11196		19.36	0	1	121490	+		85129	36256	59356	59448	94257	94257					0.1115613631660608
VLGPVVSHAGK	11	Unmodified	_VLGPVVSHAGK_					0	0	0		UGT1A1|p.S250Wfs*11|1|0.22|ENSG00000241635|chr2:233761035-233761036|-/GGACAGTCAC|frameshift_variant;nc|ENSG00000241635|P22309-2|UGT1A1;ENSG00000241635|ENST00000305208|UGT1A1	UGT1A1|p.S250Wfs*11|1|0.22|ENSG00000241635|chr2:233761035-233761036|-/GGACAGTCAC|frameshift_variant	UGT1A1|p.S250Wfs*11|1|0.22|ENSG00000241635|chr2:233761035-233761036|-/GGACAGTCAC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7832641601562	2	532.316566	1062.61858	-0.84806	-0.00045144	3.8474	0.002048	2.9993	0.0015966	532.3167602085058	56.765	0.1979	56.765	56.643	56.841	0					8	5	2	0	0	0	0.024736	1	6349	6349		44.377	15.228	1	231190			85130	10783	59357	59449	94258	94258					0.0897742460556401
VLGPYGPEW	9	Unmodified	_VLGPYGPEW_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.7660217285156	2	509.255643	1016.49673	-0.73756	-0.00037561	1.3219	0.00067317	0.58431	0.00029757	509.25578079132447	66.418	0.4632	66.195	65.905	66.368	-0.22374					16	11	2	0	0	0	0.024517	1	7579	7579		26.796	0	1	170210			85131	8856	59358	59450	94259	94259					-0.010856174768150595
VLGPYGPEW	9	Unmodified	_VLGPYGPEW_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.255643	1016.49673	-0.53281	-0.00027134	1.6349	0.00083261	1.1021	0.00056127	509.2551251068946	66.441	0.41409	66.196	65.972	66.386	-0.24517	0.0006011	0.00020396	NaN	19.36	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135980			85132	8856	59358	59450							-0.010856174768150595
VLGRATTHPL	10	Unmodified	_VLGRATTHPL_					0	0	0		ENST00000395784.1_1_5:96272371-96272563:+|nuORF	ENST00000395784.1_1_5:96272371-96272563:+|nuORF	ENST00000395784.1_1_5:96272371-96272563:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7681884765625	2	532.81419	1063.61383	-1.2262	-0.00065332	1.0492	0.00055902	-0.17699	-9.4304E-05	532.8146365760584	25.139	0.82252	25.139	24.83	25.652	0					47	19	4	0	0	0	0.03519	1	1117	1117		20.947	0	1	828650			85133	13529	59359	59451	94260	94260					0.08456540462793782
VLGRQGDLL	9	Unmodified	_VLGRQGDLL_					0	0	0			REV__nc|ENSG00000060709|O15034-2|RIMBP2	REV__nc|ENSG00000060709|O15034-2|RIMBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.78729248046875	2	485.787641	969.56073	-0.63293	-0.00030747	-0.19075	-9.2665E-05	-0.82368	-0.00040013	485.7875273592426	44.827	1.1312	44.864	44.306	45.437	0.0369					97	32	4	0	0	0	0.70186	1	4280	4280		45.952	5.3793	1	15896000	+		85134	20253	59360	59452	94261	94261					0.07473162680150836
VLGRQGNVM	9	Unmodified	_VLGRQGNVM_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3037414550781	2	487.266019	972.517485	-0.23137	-0.00011274	-0.079079	-3.8533E-05	-0.31045	-0.00015127	487.2654817272572	47.129	0.38116	47.033	46.897	47.278	-0.096653					12	9	2	0	0	0	0.024506	1	4620	4620		23.042	0	1	134610	+		85135	21057	59361	59453	94262	94262					0.03012649631216391
VLGRVWDL	8	Unmodified	_VLGRVWDL_					0	0	0		EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	EPS15L1|p.P361Efs*24|1|0.81|ENSG00000127527|chr19:16417967-16417974|TCCGAAGG/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2776794433594	2	479.279452	956.544351	0.21198	0.0001016	-4.0742	-0.0019527	-3.8622	-0.0018511	479.27739593141627	82.96	3.7977	82.96	82.031	85.829	0					175	89	2	0	0	0	0.99042	1	10594	10594		38.806	1.647	1	4888300			85136	4251	59362	59454	94263	94263					0.0643408151404401
VLGSEVLEAL	10	Unmodified	_VLGSEVLEAL_					0	0	0		ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;ENSG00000164808|ENST00000297423|SPIDR	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.2821655273438	2	515.294965	1028.57538	-0.55767	-0.00028737	-0.17014	-8.7672E-05	-0.72781	-0.00037504	515.2948094678898	65.901	0.38424	65.931	65.774	66.159	0.030098					15	9	2	0	0	0	0.03519	1	7746	7746		37.159	15.199	1	145490			85137	7323	59363	59455	94264	94264					0.06223190037621862
VLGSYGEPPC	10	Unmodified	_VLGSYGEPPC_					0	0	0			REV__ENST00000367446.7_1_1:193038603-193038657:+|nuORF	REV__ENST00000367446.7_1_1:193038603-193038657:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.84417724609375	2	511.236593	1020.45863	-0.24941	-0.00012751	-0.36363	-0.0001859	-0.61304	-0.00031341	511.23706798332734	76.027	0.45889	75.768	75.557	76.016	-0.25866					27	11	4	0	0	0	0.03519	1	9047	9047		51.335	20.832	1	142180	+		85138	31020	59364	59456	94265	94265					-0.05077871453784155
VLGTKSVASL	10	Unmodified	_VLGTKSVASL_					0	0	0		ENST00000494986.5_1_2:74682243-74683007:+|nuORF	ENST00000494986.5_1_2:74682243-74683007:+|nuORF	ENST00000494986.5_1_2:74682243-74683007:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.79718017578125	2	487.797675	973.580796	-0.05951	-2.9029E-05	-1.0578	-0.00051597	-1.1173	-0.000545	487.7970494161524	75.582	1.604	75.592	75.211	76.815	0.010368					111	41	4	0	0	0	0.96965	1	9212	9212		49.442	10.635	1	8631500			85139	15539	59365	59457	94266	94266					0.0929491362007866
VLGVGRSAAL	10	Unmodified	_VLGVGRSAAL_					0	0	0			REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.7909240722656	2	471.790184	941.565815	0.67712	0.00031946	-0.32998	-0.00015568	0.34713	0.00016377	471.7898154094353	25.524	0.67272	25.604	25.336	26.008	0.08009					31	15	3	0	0	0	0.94316	1	1178	1178		51.193	3.5354	1	679190	+		85140	35540	59366	59458	94267	94267					0.0926946654275298
VLGVPPIPVV	10	Unmodified	_VLGVPPIPVV_					0	0	0		ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.8050537109375	2	495.323328	988.632104	0.6012	0.00029779	-1.2028	-0.00059579	-0.60164	-0.00029801	495.32249654552226	82.111	0.4483	82.001	81.803	82.252	-0.11006					19	10	3	0	0	0	0.03519	1	10182	10182		12.959	0	1	114250			85141	14672	59367	59459	94268	94268					0.13733282384794165
VLGYMCTK	8	Unmodified	_VLGYMCTK_					0	0	0		L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense	L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense	L1PA6_dup2721|chr7:23261331-23261795:+|1.112793339272387|0.2438478610544489|2.19|518.0|17|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2824401855469	2	457.727349	913.440145	-0.22419	-0.00010262	0.92319	0.00042257	0.69901	0.00031996	457.72776003365567	35.054	0.60254	35.054	34.668	35.27	0					22	15	2	0	0	0	0.027866	1	2633	2633		17.365	0	1	205910			85142	17856	59368	59460	94269	94269					-0.020037046293396088
VLHAAEKDQV	10	Unmodified	_VLHAAEKDQV_					0	0	0		nc|ENSG00000150773|Q8WWB5-3|PIH1D2;nc|ENSG00000150773|Q8WWB5-2|PIH1D2;ENSG00000150773|ENST00000280350|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.7664794921875	2	555.301113	1108.58767	-0.25348	-0.00014076	0.063042	3.5007E-05	-0.19044	-0.00010575	555.3010960948878	53.004	0.72804	53.004	52.711	53.439	0					34	19	3	0	0	0	0.03519	1	5765	5765		60.118	30.948	1	548400			85143	6155	59369	59461	94270	94270					0.037722265006550515
VLHAAEKDQV	10	Unmodified	_VLHAAEKDQV_					0	0	0		nc|ENSG00000150773|Q8WWB5-3|PIH1D2;nc|ENSG00000150773|Q8WWB5-2|PIH1D2;ENSG00000150773|ENST00000280350|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.301113	1108.58767	-0.59309	-0.00032934	0.68362	0.00037961	0.09053	5.0272E-05	555.301541773485	53.064	0.59657	52.917	52.607	53.203	-0.14724	-0.030355	0.00074517	NaN	35.152	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579530			85144	6155	59369	59461							0.037722265006550515
VLHAAEKDQV	10	Unmodified	_VLHAAEKDQV_					0	0	0		nc|ENSG00000150773|Q8WWB5-3|PIH1D2;nc|ENSG00000150773|Q8WWB5-2|PIH1D2;ENSG00000150773|ENST00000280350|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.301113	1108.58767	0.091844	5.1001E-05	-0.31218	-0.00017336	-0.22034	-0.00012236	555.3008768361523	52.829	0.48361	52.921	52.674	53.157	0.091938	-0.026465	-0.00036077	NaN	35.152	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733220			85145	6155	59369	59461							0.037722265006550515
VLHFGDKT	8	Unmodified	_VLHFGDKT_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.26641845703125	2	458.747985	915.481417	-0.3004	-0.00013781	-4.4107	-0.0020234	-4.7111	-0.0021612	458.7460371767586	28.957	0.558	28.808	28.529	29.087	-0.14952					33	12	3	0	0	0	0.027866	1	1681	1681		18.324	0.8564	1	317850	+		85146	26875	59370	59462	94271	94271					0.020295157259852203
VLHFGDKT	8	Unmodified	_VLHFGDKT_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	458.747985	915.481417	-1.0858	-0.0004981	-3.4476	-0.0015816	-4.5334	-0.0020797	458.746404127599	29.157	0.56475	28.912	28.665	29.229	-0.24524	0.059736	0.00047369	NaN	12.207	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335170	+		85147	26875	59370	59462							0.020295157259852203
VLHFGDKT	8	Unmodified	_VLHFGDKT_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	458.747985	915.481417	-0.4807	-0.00022052	-4.0268	-0.0018473	-4.5075	-0.0020678	458.7462246466969	29.01	0.64935	28.837	28.507	29.156	-0.17258	-0.015198	-5.7785E-05	NaN	12.207	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292460	+		85148	26875	59370	59462							0.020295157259852203
VLHGLFIL	8	Unmodified	_VLHGLFIL_					0	0	0		ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	ENSG00000162383|ENST00000371494|SLC1A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.258544921875	2	456.289288	910.564024	-0.12055	-5.5004E-05	-1.4187	-0.00064734	-1.5393	-0.00070234	456.2892131465808	32.623	0.25916	32.623	32.494	32.753	0					8	6	2	0	0	0	0.027866	1	2297	2297		43.626	10.133	1	39749			85149	6932	59371	59463	94272	94272					0.1051645752480681
VLHHGGGHP	9	Unmodified	_VLHHGGGHP_					0	0	0		ENST00000584106.1_1_17:37034352-37046744:+|nuORF	ENST00000584106.1_1_17:37034352-37046744:+|nuORF	ENST00000584106.1_1_17:37034352-37046744:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2585754394531	2	455.735743	909.456933	0.3247	0.00014798	-0.74376	-0.00033896	-0.41906	-0.00019098	455.73487678956207	32.634	0.79641	32.696	32.315	33.112	0.062885					40	20	3	0	0	0	0.023868	1	2200	2200		39.021	0	1	409870			85150	17201	59372	59464	94273	94273					-0.0014169963685617404
VLHILRIHS	9	Unmodified	_VLHILRIHS_					0	0	0		ENST00000591073.1_1_19:37935822-37959899:-|nuORF;ENST00000591710.5_1_19:37945970-37958237:-|nuORF	ENST00000591073.1_1_19:37935822-37959899:-|nuORF	ENST00000591073.1_1_19:37935822-37959899:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.3213500976562	2	544.340375	1086.6662	-0.4574	-0.00024898	-1.0039	-0.00054647	-1.4613	-0.00079545	544.3394039751921	24.547	0.28868	24.332	24.218	24.506	-0.2151					10	6	2	0	0	0	0.024541	1	1091	1091		10.265	4.3441	1	56917			85151	17344	59373	59465	94274	94274					0.12633123596401674
VLHLIQRLV	9	Unmodified	_VLHLIQRLV_					0	0	0			REV__ENST00000598928.1_1_19:58452294-58458975:-|nuORF	REV__ENST00000598928.1_1_19:58452294-58458975:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8345336914062	2	545.858401	1089.70225	-0.75244	-0.00041073	0.023065	1.259E-05	-0.72937	-0.00039814	545.8586130493255	48.784	0.29441	48.602	48.408	48.702	-0.18206					10	7	2	0	0	0	0.024541	1	4864	4864		13.775	0	1	100330	+		85152	24840	59374	59466	94275	94275					0.16098580773245885
VLHLLVIRL	9	Unmodified	_VLHLLVIRL_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.2781372070312	2	538.371144	1074.72774	-1.0649	-0.00057334	-3.839	-0.0020668	-4.9039	-0.0026401	538.3702063860954	84.517	0.16416	84.544	84.416	84.58	0.026558					5	3	2	0	0	0	0.024541	1	10510	10510		8.2313	0	1	27312			85153	10177	59375	59467	94276	94276					0.19336055295684673
VLHLRRDL	8	Unmodified	_VLHLRRDL_					0	0	0		nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.26324462890625	2	511.3169	1020.61925	0.45891	0.00023465	2.2122	0.0011311	2.6711	0.0013658	511.3177601018719	83.955	0.55852	83.786	83.451	84.009	-0.16916					24	12	3	0	0	0	0.027866	1	10164	10164		31.955	0	1	86605			85154	18033	59376	59468	94277	94277					0.10976264045268636
VLHPVIGSDIV	11	Unmodified	_VLHPVIGSDIV_					0	0	0			REV__ENSG00000186432|ENST00000334256|KPNA4	REV__ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.8348999023438	2	574.837331	1147.66011	-1.1507	-0.00066148	-2.5992	-0.0014941	-3.7499	-0.0021556	574.8357398577799	105.99	0.48483	105.86	105.56	106.04	-0.1328					42	20	3	0	0	0	1.0399	1	13197	13197		27.882	1.1893	1	202310	+		85155	27854	59377	59469	94278	94278					0.09218560574208823
VLHQKLLL	8	Unmodified	_VLHQKLLL_					0	0	0			REV__ENSG00000197912|ENST00000645818|SPG7	REV__ENSG00000197912|ENST00000645818|SPG7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2850036621094	2	482.32112	962.627687	1.0482	0.00050555	3.7763	0.0018214	4.8244	0.0023269	482.3229571951742	54.585	0.1847	54.379	54.318	54.502	-0.20613					5	4	2	0	0	0	0.027866	1	5805	5805		29.842	16.882	1	56116	+		85156	28363	59378	59470	94279	94279					0.14487817961901328
VLHRCGKKA	9	Unmodified	_VLHRCGKKA_					0	0	0			REV__ENST00000546672.1_1_12:113866224-113872009:+|nuORF	REV__ENST00000546672.1_1_12:113866224-113872009:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.77874755859375	2	506.297653	1010.58075	-0.12448	-6.3025E-05	-2.0311	-0.0010284	-2.1556	-0.0010914	506.29605872246304	98.045	2.331	98.045	97.415	99.746	0					85	53	3	0	0	0	0.024487	1	12642	12642		31.955	6.3808	1	247850	+		85157	23941	59379	59471	94280	94280					0.07588635139097732
VLHVFGMMY	9	Unmodified	_VLHVFGMMY_					0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.8206176757812	2	548.769548	1095.52454	-0.52184	-0.00028637	0.61997	0.00034022	0.098126	5.3849E-05	548.7697087029917	56.982	0.47002	56.815	56.637	57.107	-0.1672					18	12	2	0	0	0	0.024475	1	6193	6193		29.842	12.477	1	286740			85158	1532	59380	59472	94281	94281					-0.01939753812575873
VLHVKTESL	9	Unmodified	_VLHVKTESL_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.3028564453125	2	513.303124	1024.5917	0.13007	6.6766E-05	-0.49928	-0.00025628	-0.36921	-0.00018952	513.3029453508955	37.266	0.73151	37.073	36.812	37.543	-0.193					46	18	3	0	0	0	0.22902	2	2983	2983;2995		85.161	13.865	1	2618700			85159	10516	59381	59473	94282;94283	94282					0.0803831599437217
VLHVKTESL	9	Unmodified	_VLHVKTESL_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.3031005859375	2	513.303124	1024.5917	-0.99763	-0.00051209	0.65732	0.0003374	-0.34031	-0.00017468	513.3034380943269	37.291	0.8177	37.072	36.726	37.544	-0.2195					66	20	5	0	0	0	0.16638	1	3001	3001		95.815	26.188	1	2670700			85160	10516	59381	59473	94284	94284					0.0803831599437217
VLHVKTESL	9	Unmodified	_VLHVKTESL_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.30322265625	2	513.303124	1024.5917	-0.074146	-3.806E-05	-0.29923	-0.0001536	-0.37338	-0.00019166	513.3030000173754	37.25	0.86414	37.041	36.645	37.509	-0.2092					65	21	5	0	0	0	0.027092	3	2965	2965;2976;2989		143.89	32.238	1	2409900			85161	10516	59381	59473	94285;94286;94287	94285					0.0803831599437217
VLHYTCII	8	Unmodified	_VLHYTCII_					0	0	0			REV__nc|ENSG00000205494|A6NMU1|OR52A4P	REV__nc|ENSG00000205494|A6NMU1|OR52A4P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2114562988281	2	481.262413	960.510274	-1.0649	-0.0005125	2.6489	0.0012748	1.584	0.00076232	481.26353498023224	43.896	0.45588	43.652	43.448	43.904	-0.2444					22	11	2	0	0	0	0.027866	1	4020	4020		44.531	7.5026	1	927750	+		85162	37087	59382	59474	94288	94288					0.02843917030781995
VLIAAYVAVF	10	Unmodified	_VLIAAYVAVF_					0	0	0		ENSG00000121764|ENST00000403528|HCRTR1	ENSG00000121764|ENST00000403528|HCRTR1	ENSG00000121764|ENST00000403528|HCRTR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.8345336914062	2	533.320786	1064.62702	-0.14161	-7.5523E-05	-0.89289	-0.0004762	-1.0345	-0.00055172	533.3201533807573	80.975	0.40813	80.768	80.587	80.996	-0.20633					14	9	2	0	0	0	0.03519	1	9757	9757		35.201	3.2459	1	120890			85163	3887	59383	59475	94289	94289					0.09728978522161924
VLIAIAVSS	9	Unmodified	_VLIAIAVSS_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.7747497558594	2	436.776211	871.537869	0.28535	0.00012463	-3.604	-0.0015741	-3.3186	-0.0014495	436.7745739222148	90.041	2.3328	90.025	89.541	91.873	-0.016708					171	55	5	0	0	0	0.92825	1	11385	11385		30.504	0.6621	1	37030000	+		85164	25803	59384	59476	94290	94290					0.09696143562666748
VLIDDLTTL	9	Unmodified	_VLIDDLTTL_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-2|MTO1;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1;ENST00000370308.8_1_6:74189644-74210455:+|nuORF	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7905578613281	2	501.789515	1001.56448	0.39432	0.00019787	1.7709	0.0008886	2.1652	0.0010865	501.7903236977826	86.836	0.67462	86.836	86.561	87.236	0					28	15	2	0	0	0	0.13494	1	10913	10913		102.77	25.927	1	2224600			85165	4873	59385	59477	94291	94291					0.06375787663318988
VLIDDLTTL	9	Unmodified	_VLIDDLTTL_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-2|MTO1;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1;ENST00000370308.8_1_6:74189644-74210455:+|nuORF	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.79052734375	2	501.789515	1001.56448	0.054249	2.7222E-05	2.1059	0.0010567	2.1601	0.0010839	501.7905292818232	86.845	0.63228	86.8	86.51	87.142	-0.045105					28	14	2	0	0	0	0.18915	3	10890	10877;10890;10897		90.777	35.272	1	2076600			85166	4873	59385	59477	94292;94293;94294	94293					0.06375787663318988
VLIDDLTTL	9	Unmodified	_VLIDDLTTL_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-2|MTO1;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1;ENST00000370308.8_1_6:74189644-74210455:+|nuORF	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.7908020019531	2	501.789515	1001.56448	0.11433	5.7372E-05	1.697	0.00085154	1.8113	0.00090891	501.790422872517	86.713	1.0219	86.734	86.157	87.178	0.021263					70	23	4	0	0	0	0.034181	4	10830	10824;10830;10843;10849		138.24	41.307	1	2423900			85167	4873	59385	59477	94295;94296;94297;94298	94296					0.06375787663318988
VLIDEVESL	9	Unmodified	_VLIDEVESL_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13;ENST00000512024.5_1_5:893053-908577:+|nuORF	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7784729003906	2	508.779148	1015.54374	-0.436	-0.00022183	-0.23189	-0.00011798	-0.6679	-0.00033981	508.77903459645586	78.803	1.716	78.803	78.447	80.163	0					92	40	4	0	0	0	0.015769	4	9770	9746;9758;9770;9783		157.99	56.778	1	3538000			85168	1454	59386	59478	94299;94300;94301;94302	94301					0.03659197283673166
VLIDEVESL	9	Unmodified	_VLIDEVESL_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13;ENST00000512024.5_1_5:893053-908577:+|nuORF	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.7789306640625	2	508.779148	1015.54374	-0.26588	-0.00013528	-0.30153	-0.00015341	-0.56741	-0.00028869	508.77893405840524	78.955	1.2959	78.763	78.464	79.76	-0.1921					82	30	4	0	0	0	0.013018	3	9747	9747;9760;9772		173.85	72.637	1	3179900			85169	1454	59386	59478	94303;94304;94305	94303					0.03659197283673166
VLIDEVESL	9	Unmodified	_VLIDEVESL_					0	0	0		ENSG00000071539|ENST00000166345|TRIP13;ENST00000512024.5_1_5:893053-908577:+|nuORF	ENSG00000071539|ENST00000166345|TRIP13	ENSG00000071539|ENST00000166345|TRIP13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.7788391113281	2	508.779148	1015.54374	-0.2056	-0.0001046	-0.14289	-7.2697E-05	-0.34848	-0.0001773	508.77896209298814	78.817	1.662	78.835	78.567	80.229	0.018677					72	39	4	0	0	0	0.016838	3	9688	9673;9688;9701		152.63	63.99	1	3753800			85170	1454	59386	59478	94306;94307;94308	94307					0.03659197283673166
VLIDLSSWL	9	Unmodified	_VLIDLSSWL_					0	0	0		ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3001098632812	2	523.30005	1044.58555	-0.89596	-0.00046886	0.7553	0.00039525	-0.14066	-7.3607E-05	523.3002275851705	96.219	0.97531	96.219	95.95	96.925	0					48	22	3	0	0	0	0.29104	1	12282	12282		76.847	0.072494	1	709770			85171	15872	59387	59479	94309	94309					0.06503797762843533
VLIDLSSWL	9	Unmodified	_VLIDLSSWL_					0	0	0		ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.30005	1044.58555	0.37728	0.00019743	-0.54624	-0.00028584	-0.16895	-8.8414E-05	523.299509484461	96.109	0.92999	96.115	95.818	96.748	0.0065079	0.017726	1.712E-05	NaN	76.847	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598910			85172	15872	59387	59479							0.06503797762843533
VLIDLSSWL	9	Unmodified	_VLIDLSSWL_					0	0	0		ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.30005	1044.58555	0.9181	0.00048044	-1.1976	-0.00062672	-0.27952	-0.00014627	523.2992730718757	96.203	0.973	96.205	95.911	96.884	0.0020752	0.10713	-0.00066462	NaN	76.847	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638880			85173	15872	59387	59479							0.06503797762843533
VLIDLSSWL	9	Unmodified	_VLIDLSSWL_					0	0	0		ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.30005	1044.58555	0.11746	6.1464E-05	-0.73005	-0.00038203	-0.61259	-0.00032057	523.2995521401585	96.094	0.7561	95.957	95.767	96.524	-0.1367	-0.14059	-0.00017526	NaN	76.847	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365910			85174	15872	59387	59479							0.06503797762843533
VLIDLSSWL	9	Unmodified	_VLIDLSSWL_					0	0	0		ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.30005	1044.58555	0.86049	0.00045029	-1.4737	-0.00077119	-0.61322	-0.0003209	523.2990311306496	96.154	0.62463	96.031	95.771	96.396	-0.12305	-0.066241	-0.00095357	NaN	76.847	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284120			85175	15872	59387	59479							0.06503797762843533
VLIDLSSWL	9	Unmodified	_VLIDLSSWL_					0	0	0		ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	ENST00000513705.5_1_4:5205889-5347127:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.30005	1044.58555	-0.17351	-9.0799E-05	0.552	0.00028886	0.37848	0.00019806	523.2995599274582	96.214	1.0223	96.058	95.444	96.466	-0.15646	-0.039906	0.0011665	NaN	76.847	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310420			85176	15872	59387	59479							0.06503797762843533
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	560.3106689453125	2	560.31148	1118.60841	0.032144	1.801E-05	-1.3254	-0.00074265	-1.2933	-0.00072464	560.3107890557492	51.584	3.1801	51.584	51.248	54.428	0					234	87	6	0	0	0	0.014454	8	5509	5449;5461;5473;5485;5497;5509;5523;5537		185.55	80.803	1	98249000			85177	1742	59388	59480	94310;94311;94312;94313;94314;94315;94316;94317	94315					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.310791015625	2	560.31148	1118.60841	-0.87549	-0.00049055	-0.47646	-0.00026696	-1.3519	-0.00075751	560.3112763338007	51.74	2.6256	51.593	51.263	53.889	-0.14735					204	71	6	0	0	0	0.016758	8	5473	5451;5461;5473;5485;5497;5509;5524;5537		153.04	65.705	1	99150000			85178	1742	59388	59480	94318;94319;94320;94321;94322;94323;94324;94325	94320					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.3109130859375	2	560.31148	1118.60841	-1.0816	-0.00060601	-0.29248	-0.00016388	-1.374	-0.00076989	560.311366664109	51.473	2.6425	51.56	51.189	53.831	0.087009					213	71	6	0	0	0	0.015752	9	5416	5358;5368;5380;5392;5404;5416;5428;5440;5455		158.07	70.32	1	94004000			85179	1742	59388	59480	94326;94327;94328;94329;94330;94331;94332;94333;94334	94331					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.3117065429688	2	560.31148	1118.60841	0.27501	0.00015409	-0.53603	-0.00030034	-0.26102	-0.00014625	560.3111581288904	51.647	1.3582	51.528	51.122	52.48	-0.11875					96	33	6	0	0	0	0.086035	2	5346	5334;5346		115.49	30.579	1	18166000			85180	1742	59388	59480	94335;94336	94336					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.311279296875	2	560.31148	1118.60841	-1.857	-0.0010405	1.4089	0.00078942	-0.44813	-0.00025109	560.3122612596297	51.944	1.3126	51.675	51.321	52.633	-0.26904					93	34	5	0	0	0	0.041068	2	5362	5362;5374		132.76	47.842	1	18310000			85181	1742	59388	59480	94337;94338	94337					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.3115844726562	2	560.31148	1118.60841	0.41635	0.00023329	-1.0011	-0.00056095	-0.58479	-0.00032766	560.3109687338258	51.768	1.2175	51.584	51.258	52.475	-0.18404					95	31	5	0	0	0	0.071379	3	5357	5331;5344;5357		120.87	44.094	1	18788000			85182	1742	59388	59480	94339;94340;94341	94341					0.05384816880314247
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2840576171875	2	479.2844	956.554247	-0.40677	-0.00019496	-1.0445	-0.00050062	-1.4513	-0.00069558	479.2843308619538	75.502	4.331	75.502	75.116	79.447	0					269	107	6	0	0	0	0.008678	23	9292	9234;9245;9256;9268;9280;9292;9304;9316;9328;9340;9352;9365;9377;9389;9401;9414;9426;9439;9451;9463;9474;9509;9522		247.94	95.471	1	268590000			85183	8615	59389	59481	94342;94343;94344;94345;94346;94347;94348;94349;94350;94351;94352;94353;94354;94355;94356;94357;94358;94359;94360;94361;94362;94363;94364	94347					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.2841491699219	2	479.2844	956.554247	-0.17092	-8.1919E-05	-1.2144	-0.00058206	-1.3854	-0.00066398	479.284255808727	75.738	4.5874	75.493	75.077	79.665	-0.24455					323	113	6	0	0	0	0.0085264	27	9267	9235;9245;9255;9267;9279;9291;9303;9315;9328;9341;9353;9363;9376;9388;9400;9412;9425;9437;9449;9461;9472;9505;9515;9547;9582;9726;9775		255.13	83.095	1	288610000			85184	8615	59389	59481	94365;94366;94367;94368;94369;94370;94371;94372;94373;94374;94375;94376;94377;94378;94379;94380;94381;94382;94383;94384;94385;94386;94387;94388;94389;94390;94391	94368					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2843322753906	2	479.2844	956.554247	0.32812	0.00015726	-1.75	-0.00083877	-1.4219	-0.0006815	479.28399912512674	75.544	3.717	75.554	75.051	78.768	0.010376					288	92	6	0	0	0	0.008678	24	9185	9164;9175;9185;9197;9209;9221;9233;9245;9257;9269;9281;9295;9307;9318;9330;9342;9355;9368;9380;9391;9403;9432;9444;9488		265.41	81.686	1	292750000			85185	8615	59389	59481	94392;94393;94394;94395;94396;94397;94398;94399;94400;94401;94402;94403;94404;94405;94406;94407;94408;94409;94410;94411;94412;94413;94414;94415	94394					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.28460693359375	2	479.2844	956.554247	-0.03533	-1.6933E-05	0.18168	8.7077E-05	0.14635	7.0143E-05	479.28435968930916	78.983	1.034	79.002	78.777	79.811	0.018677					61	24	3	0	0	0	0.014034	2	9714	9714;9727		166.68	70.488	1	1185600			85186	8615	59389	59481	94416;94417	94416					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2843322753906	2	479.2844	956.554247	0.0025884	1.2406E-06	-0.47246	-0.00022644	-0.46987	-0.0002252	479.28415891742657	75.794	1.616	75.521	75.186	76.802	-0.27266					117	39	5	0	0	0	0.0089939	5	8966	8944;8955;8966;8977;8993		237.81	78.22	1	9964100			85187	8615	59389	59481	94418;94419;94420;94421;94422	94420					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2844543457031	2	479.2844	956.554247	-0.2717	-0.00013022	-0.31143	-0.00014926	-0.58313	-0.00027949	479.2843184908486	75.766	1.7394	75.508	75.117	76.856	-0.25865					116	42	5	0	0	0	0.0089939	5	8987	8952;8964;8975;8987;9002		237.81	78.22	1	10399000			85188	8615	59389	59481	94423;94424;94425;94426;94427	94426					0.0742322472875685
VLIENVASL	9	Unmodified	_VLIENVASL_					0	0	0		GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant;ENSG00000176153|ENST00000389614|GPX2	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	GPX2|p.E106Gfs*?|1|0.07|ENSG00000176153|chr14:64939743-64939744|CT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.28424072265625	2	479.2844	956.554247	0.32364	0.00015511	-0.87791	-0.00042077	-0.55427	-0.00026565	479.28402545677847	75.658	1.7798	75.483	75.113	76.892	-0.17548					113	43	5	0	0	0	0.0089939	4	8948	8926;8936;8948;8962		237.81	80.605	1	10451000			85189	8615	59389	59481	94428;94429;94430;94431	94430					0.0742322472875685
VLIEPVAAG	9	Unmodified	_VLIEPVAAG_					0	0	0		nc|ENSG00000011021|P51797-5|CLCN6;nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-5|CLCN6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	434.7591857910156	2	434.760561	867.506569	0.64611	0.00028091	-3.6542	-0.0015887	-3.0081	-0.0013078	434.75893033757467	86.807	1.5618	86.807	86.128	87.69	0					94	36	5	0	0	0	0.78069	1	10916	10916		40.573	0	1	5395200			85190	18033	59390	59482	94432	94432					0.06751570528570028
VLIEQQIP	8	Unmodified	_VLIEQQIP_					0	0	0			REV__ENSG00000112115|ENST00000648244|IL17A	REV__ENSG00000112115|ENST00000648244|IL17A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	470.27911376953125	2	470.279118	938.543683	-0.62422	-0.00029356	1.4582	0.00068578	0.83403	0.00039222	470.27965427441234	75.498	1.2418	75.498	75.232	76.473	0					75	32	3	0	0	0	0.46709	1	9290	9290		88.643	0	1	3098300	+		85191	21966	59391	59483	94433	94433					0.07195242074340058
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.81768798828125	2	500.818076	999.621598	0.165	8.2636E-05	-0.77744	-0.00038935	-0.61243	-0.00030672	500.81766576740466	93.788	1.7071	93.788	93.429	95.136	0					121	40	5	0	0	0	0.011373	5	11914	11903;11914;11926;11939;11952		229.64	38.928	1	8749400			85192	2325	59392	59484	94434;94435;94436;94437;94438	94435					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.8179626464844	2	500.818076	999.621598	-0.46372	-0.00023224	-0.12184	-6.102E-05	-0.58557	-0.00029326	500.8179713616033	93.73	2.4397	93.726	93.368	95.808	-0.0041962					140	57	4	0	0	0	0.011373	4	11886	11862;11874;11886;11898		229.64	55.789	1	8695600			85193	2325	59392	59484	94439;94440;94441;94442	94441					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.8177795410156	2	500.818076	999.621598	-0.46036	-0.00023055	-0.05644	-2.8266E-05	-0.5168	-0.00025882	500.8180220654646	93.819	1.7515	93.825	93.433	95.185	0.0059891					115	41	5	0	0	0	0.011373	4	11836	11825;11836;11848;11861		229.64	55.789	1	7446100			85194	2325	59392	59484	94443;94444;94445;94446	94444					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.818115234375	2	500.818076	999.621598	-1.0243	-0.00051299	0.48501	0.0002429	-0.5393	-0.00027009	500.81829990686464	93.731	1.7993	93.591	93.223	95.022	-0.13995					98	41	6	0	0	0	0.011373	4	11521	11511;11521;11533;11546		229.64	55.789	1	5337800			85195	2325	59392	59484	94447;94448;94449;94450	94448					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.8180236816406	2	500.818076	999.621598	0.17864	8.9466E-05	-0.78678	-0.00039403	-0.60814	-0.00030457	500.8176478413199	93.684	2.7511	93.562	93.191	95.942	-0.12215					145	63	5	0	0	0	0.011373	5	11536	11526;11536;11547;11559;11574		229.64	55.789	1	5803700			85196	2325	59392	59484	94451;94452;94453;94454;94455	94452					0.12177254939717841
VLIETLVTL	9	Unmodified	_VLIETLVTL_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000606061.1_1_20:32881868-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.8175048828125	2	500.818076	999.621598	-0.39343	-0.00019704	-0.19927	-9.9798E-05	-0.5927	-0.00029684	500.8179403337622	93.777	2.7572	93.629	93.217	95.974	-0.14765					149	63	4	0	0	0	0.011373	5	11532	11511;11521;11532;11546;11558		229.64	55.789	1	5203900			85197	2325	59392	59484	94456;94457;94458;94459;94460	94458					0.12177254939717841
VLIFTGVRN	9	Unmodified	_VLIFTGVRN_					0	0	0			REV__OR6B3|p.T7N|1|0.61|ENSG00000178586|chr2:240046053-240046053|G/T|missense_variant	REV__OR6B3|p.T7N|1|0.61|ENSG00000178586|chr2:240046053-240046053|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8036193847656	2	509.805834	1017.59712	-0.7437	-0.00037914	-3.7263	-0.0018997	-4.47	-0.0022788	509.80404291470217	85.231	3.3668	85.257	83.9	87.267	0.025536					203	79	4	0	0	0	0.92825	1	10549	10549		30.504	0	1	2572600	+		85198	37326	59393	59485	94461	94461					0.08902039576844345
VLIGLQQKLSE	11	Unmodified	_VLIGLQQKLSE_					0	0	0			REV__DDX59|p.N184S|1|0.04|ENSG00000118197|chr1:200666190-200666190|T/C|missense_variant	REV__DDX59|p.N184S|1|0.04|ENSG00000118197|chr1:200666190-200666190|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	409.9156799316406	3	409.915089	1226.72344	-0.31281	-0.00012823	1.3915	0.00057041	1.0787	0.00044218	409.9155577399488	32.104	0.83226	31.946	31.651	32.484	-0.15772					52	19	4	0	0	0	1.0764	1	2172	2172		17.833	0.36513	1	985050	+		85199	19663	59394	59486	94462	94462					0.11914501291471424
VLIIGFVLET	10	Unmodified	_VLIIGFVLET_					0	0	0			REV__nc|ENSG00000166091|Q96DZ9-4|CMTM5	REV__nc|ENSG00000166091|Q96DZ9-4|CMTM5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.3141479492188	2	552.339175	1102.6638	3.5113	0.0019394	4.1032	0.0022663	7.6145	0.0042058	552.3413357549331	18.628	0.2944	18.691	18.55	18.845	0.063307					9	5	2	0	0	0	0.03519	1	266	266		12.207	0.69583	1	19280	+		85200	36882	59395	59487	94463	94463					0.11657230348077974
VLIIGFVLET	10	Unmodified	_VLIIGFVLET_					0	0	0			REV__nc|ENSG00000166091|Q96DZ9-4|CMTM5	REV__nc|ENSG00000166091|Q96DZ9-4|CMTM5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	552.339175	1102.6638	2.389	0.0013196	4.8242	0.0026646	7.2133	0.0039842	552.3418325874313	18.395	0.29324	18.395	18.284	18.577	0	-0.12089	-0.00057561	NaN	12.207	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25690	+		85201	36882	59395	59487							0.11657230348077974
VLIIGFVLET	10	Unmodified	_VLIIGFVLET_					0	0	0			REV__nc|ENSG00000166091|Q96DZ9-4|CMTM5	REV__nc|ENSG00000166091|Q96DZ9-4|CMTM5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	552.339175	1102.6638	-0.23533	-0.00012998	7.6154	0.0042063	7.3801	0.0040763	552.3432303543108	18.593	0.34303	18.462	18.302	18.645	-0.13147	-0.054179	0.0025077	NaN	12.207	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30130	+		85202	36882	59395	59487							0.11657230348077974
VLILFKLIL	9	Unmodified	_VLILFKLIL_					0	0	0		AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant;nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.3423461914062	2	536.380646	1070.74674	-0.75406	-0.00040446	-2.974	-0.0015952	-3.7281	-0.0019997	536.3788504123521	27.105	0.15115	27.105	26.993	27.144	0					6	3	2	0	0	0	0.024517	1	1433	1433		12.959	5.2689	1	88644			85203	169	59396	59488	94464	94464					0.21419591866765586
VLILFKLIL	9	Unmodified	_VLILFKLIL_					0	0	0		AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant;nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	AVL9|p.I384Dfs*52|1|0.12|ENSG00000105778|chr7:32559397-32559398|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3418579101562	2	536.380646	1070.74674	-0.80121	-0.00042975	-2.3646	-0.0012683	-3.1658	-0.0016981	536.8809849010196	27.079	0.20451	26.911	26.809	27.013	-0.16816					6	4	2	0	0	0	0.024541	1	1467	1467		7.6903	3.705	1	31611			85204	169	59396	59488	94465	94465					0.21419591866765586
VLILIKRLI	9	Unmodified	_VLILIKRLI_					0	0	0			REV__nc|ENSG00000101773|Q99708-3|RBBP8	REV__nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8311767578125	2	540.896995	1079.77944	-0.49361	-0.00026699	1.79	0.00096822	1.2964	0.00070122	540.8981431283869	75.334	0.2587	75.344	75.211	75.47	0.010376					10	6	2	0	0	0	0.024541	1	9162	9162		17.365	0	1	146170	+		85205	36527	59397	59489	94466	94466					0.2427379898961135
VLILIKRLI	9	Unmodified	_VLILIKRLI_					0	0	0			REV__nc|ENSG00000101773|Q99708-3|RBBP8	REV__nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	540.896995	1079.77944	-1.6611	-0.00089846	-4.9153	-0.0026587	-6.5763	-0.0035571	540.8946025432101	75.365	0.24949	75.365	75.232	75.481	0	0.010622	-0.0036307	NaN	11.511	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123970	+		85206	36527	59397	59489							0.2427379898961135
VLILLYSLLV	10	Unmodified	_VLILLYSLLV_					0	0	0			REV__ENSG00000280314|ENST00000641662|OR8K3	REV__ENSG00000280314|ENST00000641662|OR8K3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	573.2791137695312	2	573.380843	1144.74713	0.1627	9.3287E-05	-0.86904	-0.00049829	-0.70635	-0.00040501	573.3807284127241	77.683	0.21578	77.421	77.313	77.528	-0.26202					5	4	2	0	0	0	0.03519	1	9253	9253		12.207	0	1	97997	+		85207	29237	59398	59490	94467	94467					0.18054966795921246
VLIMILLLS	9	Unmodified	_VLIMILLLS_					0	0	0		ENST00000485978.1_1_9:136338979-136343630:-|nuORF;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6	ENST00000485978.1_1_9:136338979-136343630:-|nuORF	ENST00000485978.1_1_9:136338979-136343630:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	507.8367614746094	2	507.835214	1013.65588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.611	1	17.404	16.904	17.904	-0.20669								0	0	0	0.67604	1	195	195		25.45	4.5032	1				85208	6807	59399	59491	94468	94468					0.14959379826984787
VLIMVISLL	9	Oxidation (M)	_VLIM(Oxidation (M))VISLL_		VLIM(1)VISLL		VLIM(48)VISLL	0	0	1			REV__nc|ENSG00000015520|Q9UHC9-2|NPC1L1	REV__nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.8233947753906	2	508.824846	1015.63514	0.15015	7.6401E-05	-3.5195	-0.0017908	-3.3693	-0.0017144	508.822869453823	101.57	0.56902	101.45	101.19	101.76	-0.12576					37	12	4	0	0	0	0.67308	1	12608	12608		47.916	9.1095	1	426800	+		85209	19969	59400	59492	94469	94469		617			0.1279478944730954
VLINTSVTL	9	Unmodified	_VLINTSVTL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7711486816406	2	480.292225	958.569897	-0.61057	-0.00029325	0.81384	0.00039088	0.20327	9.7629E-05	480.29249000806794	74.292	0.68099	74.301	74.009	74.69	0.0096588					30	15	3	0	0	0	0.024438	1	9061	9061		22.58	1.6327	1	351280			85210	9775	59401	59493	94470	94470					0.08895511245816579
VLINTSVTL	9	Unmodified	_VLINTSVTL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	480.292225	958.569897	2.2976	0.0011035	-2.1227	-0.0010195	0.17483	8.3968E-05	480.2910963566368	74.262	0.59412	74.262	73.999	74.593	0	0.0080297	-0.0012733	NaN	22.58	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296190			85211	9775	59401	59493							0.08895511245816579
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.8446350097656	2	510.844428	1019.6743	-0.62786	-0.00032074	-0.33286	-0.00017004	-0.96071	-0.00049078	510.8442846520898	76.082	4.224	76.082	75.307	79.53	0					236	104	5	0	0	0	0.08613	11	9346	9314;9323;9335;9346;9358;9382;9394;9412;9442;9455;9467		115.46	41.732	1	51425000			85212	8236	59402	59494	94471;94472;94473;94474;94475;94476;94477;94478;94479;94480;94481	94474					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.84423828125	2	510.844428	1019.6743	-0.48705	-0.00024881	-0.37206	-0.00019007	-0.85911	-0.00043887	510.84425462162284	76.25	4.5619	76.022	75.245	79.807	-0.22843					244	112	5	0	0	0	0.06122	13	9375	9307;9317;9329;9339;9351;9375;9387;9399;9411;9429;9443;9460;9473		124.59	62.81	1	57788000			85213	8236	59402	59494	94482;94483;94484;94485;94486;94487;94488;94489;94490;94491;94492;94493;94494	94487					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.8441162109375	2	510.844428	1019.6743	0.059948	3.0624E-05	-1.0024	-0.00051207	-0.94246	-0.00048145	510.8439425160303	76.098	5.1728	76.109	75.471	80.644	0.011642					256	126	5	0	0	0	0.034181	9	9275	9242;9252;9264;9275;9306;9323;9335;9360;9384		138.24	53.873	1	54455000			85214	8236	59402	59494	94495;94496;94497;94498;94499;94500;94501;94502;94503	94498					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.8442687988281	2	510.844428	1019.6743	-0.35367	-0.00018067	-0.46384	-0.00023695	-0.81751	-0.00041762	510.844178073158	76.215	1.6554	75.943	75.227	76.882	-0.27266					148	40	5	0	0	0	0.096521	7	9044	8985;8995;9007;9019;9044;9061;9082		111.65	40.353	1	29239000			85215	8236	59402	59494	94504;94505;94506;94507;94508;94509;94510	94508					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.84393310546875	2	510.844428	1019.6743	-0.22774	-0.00011634	-0.54879	-0.00028035	-0.77653	-0.00039669	510.8441376321849	76.118	1.8347	75.859	75.158	76.993	-0.25865					162	45	5	0	0	0	0.13494	6	9029	8994;9005;9017;9029;9071;9095		102.77	24.879	1	26498000			85216	8236	59402	59494	94511;94512;94513;94514;94515;94516	94514					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.8441467285156	2	510.844428	1019.6743	-0.0052629	-2.6885E-06	-0.86397	-0.00044136	-0.86923	-0.00044404	510.84398698266796	76.001	1.8188	75.826	75.154	76.973	-0.17548					158	44	5	0	0	0	0.062871	7	8963	8963;8973;8984;8997;9009;9021;9033		123.99	37.931	1	28789000			85217	8236	59402	59494	94517;94518;94519;94520;94521;94522;94523	94517					0.1652525779318239
VLIPWFVPV	9	Unmodified	_VLIPWFVPV_					0	0	0			REV__ENSG00000157916|ENST00000605895|RER1	REV__ENSG00000157916|ENST00000605895|RER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.23681640625	2	535.325871	1068.63719	-0.2864	-0.00015332	-4.2423	-0.002271	-4.5287	-0.0024243	535.3235524533346	69.642	0.45158	69.391	69.156	69.608	-0.25063					17	10	2	0	0	0	0.024389	1	8063	8063		39.021	11.139	1	137730	+		85218	25159	59403	59495	94524	94524					0.10561586247422383
VLIQLSSVL	9	Unmodified	_VLIQLSSVL_					0	0	0			REV__nc|ENSG00000166343|Q4VC12-2|MSS51	REV__nc|ENSG00000166343|Q4VC12-2|MSS51	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3107604980469	2	486.310418	970.606283	-0.93526	-0.00045483	0.23094	0.00011231	-0.70432	-0.00034252	486.3103548117762	44.622	0.66168	44.521	44.243	44.905	-0.10087					37	16	3	0	0	0	0.70186	1	4178	4178		45.952	0	1	1303900	+		85219	26003	59404	59496	94525	94525					0.11980388142512766
VLIQSHLAIL	10	Unmodified	_VLIQSHLAIL_					0	0	0		ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8475341796875	2	553.850242	1105.68593	-0.25805	-0.00014292	-3.6696	-0.0020324	-3.9276	-0.0021753	553.8482485949685	105.46	0.41885	105.46	105.29	105.71	0.00096893					21	14	2	0	0	0	1.1217	1	13501	13501		21.96	2.5999	1	126390			85220	17280	59405	59497	94526	94526					0.13731454816502264
VLIQSHLAIL	10	Unmodified	_VLIQSHLAIL_					0	0	0		ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	553.850242	1105.68593	0.44495	0.00024644	-4.1023	-0.0022721	-3.6573	-0.0020256	553.847956678458	105.5	0.4071	105.5	105.32	105.73	0	-0.0070763	-0.00029982	NaN	21.96	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144180			85221	17280	59405	59497							0.13731454816502264
VLIQSHLAIL	10	Unmodified	_VLIQSHLAIL_					0	0	0		ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.850242	1105.68593	0.026244	1.4535E-05	-4.0137	-0.002223	-3.9875	-0.0022085	553.8482684616499	105.61	0.3717	105.61	105.44	105.81	0.00015259	0.095409	-0.00020172	NaN	21.96	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132280			85222	17280	59405	59497							0.13731454816502264
VLIQSHLAIL	10	Unmodified	_VLIQSHLAIL_					0	0	0		ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	553.850242	1105.68593	0.0049168	2.7232E-06	-3.6294	-0.0020101	-3.6244	-0.0020074	553.8481797641034	105.59	0.38959	105.46	105.28	105.67	-0.12444	-0.047612	0.00022407	NaN	21.96	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91548			85223	17280	59405	59497							0.13731454816502264
VLIQSHLAIL	10	Unmodified	_VLIQSHLAIL_					0	0	0		ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.850242	1105.68593	-0.88124	-0.00048808	-2.6161	-0.0014489	-3.4974	-0.001937	553.8488357136262	105.6	0.34335	105.47	105.3	105.65	-0.13099	-0.041397	0.0013464	NaN	21.96	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75800			85224	17280	59405	59497							0.13731454816502264
VLIQSHLAIL	10	Unmodified	_VLIQSHLAIL_					0	0	0		ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.850242	1105.68593	0.36629	0.00020287	-4.1366	-0.002291	-3.7703	-0.0020882	553.8479279865625	105.72	0.31989	105.56	105.37	105.69	-0.16132	0.046476	-0.00033776	NaN	21.96	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88650			85225	17280	59405	59497							0.13731454816502264
VLIRDGFLL	9	Unmodified	_VLIRDGFLL_					0	0	0		ENSG00000125457|ENST00000325102|MIF4GD;nc|ENSG00000125457|A9UHW6-2|MIF4GD;nc|ENSG00000125457|A9UHW6-3|MIF4GD	ENSG00000125457|ENST00000325102|MIF4GD	ENSG00000125457|ENST00000325102|MIF4GD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3252563476562	2	523.32386	1044.63317	-0.16436	-8.6012E-05	-0.40606	-0.0002125	-0.57042	-0.00029851	523.3236606525719	71.83	1.3883	71.83	71.185	72.573	0					117	35	5	0	0	0	0.62163	1	8765	8765		51.335	2.1247	1	15698000			85226	4107	59406	59498	94527	94527					0.11263496753713298
VLIRPLIVS	9	Unmodified	_VLIRPLIVS_					0	0	0			REV__ENST00000415482.6_1_7:77256452-77256497:+|nuORF	REV__ENST00000415482.6_1_7:77256452-77256497:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.30596923828125	2	505.342052	1008.66955	-0.30961	-0.00015646	-0.26877	-0.00013582	-0.57839	-0.00029228	505.34170015943386	69.248	0.61282	69.248	69.056	69.669	0					34	15	3	0	0	0	0.024427	1	8386	8386		42.396	3.59	1	483710	+		85227	32054	59407	59499	94528	94528					0.16556373650428213
VLISPDRAWLI	11	Unmodified	_VLISPDRAWLI_					0	0	0		ENSG00000198963|ENST00000376896|RORB;nc|ENSG00000198963|Q92753|RORB	ENSG00000198963|ENST00000376896|RORB	ENSG00000198963|ENST00000376896|RORB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.882568359375	2	641.87953	1281.74451	1.496	0.00096027	2.9831	0.0019148	4.4792	0.0028751	641.8813252890238	95.712	2.8518	95.715	94.87	97.721	0.0033722					257	65	5	0	0	0	0.94988	1	12258	12258		47.96	5.0953	1	2979200			85228	10267	59408	59500	94529	94529					0.11490511391002656
VLITILDVN	9	Unmodified	_VLITILDVN_					0	0	0		nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MSMS	OPSCC_40_ClassI_Rep-1	4	500.3065185546875	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.111	1	93.973	93.473	94.473	-0.13779								0	0	0	0.56622	1	11584	11584		44.117	11.304	1				85229	10868	59409	59501	94530	94530					0.10184084279887884
VLITILDVN	9	Unmodified	_VLITILDVN_					0	0	0		nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MSMS	OPSCC_40_ClassI_Rep-1	4	500.3066101074219	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.197	1	94.059	93.559	94.559	-0.13779								0	0	0	0.13191	1	11596	11596		85.359	27.548	1				85230	10868	59409	59501	94531	94531					0.10184084279887884
VLITILDVN	9	Unmodified	_VLITILDVN_					0	0	0		nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MSMS	OPSCC_40_ClassI_Rep-2	5	500.30633544921875	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.195	1	94.073	93.573	94.573	-0.12215								0	0	0	0.61872	1	11611	11611		37.159	5.2042	1				85231	10868	59409	59501	94532	94532					0.10184084279887884
VLITILDVN	9	Unmodified	_VLITILDVN_					0	0	0		nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MSMS	OPSCC_40_ClassI_Rep-3	6	500.30682373046875	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.249	1	94.101	93.601	94.601	-0.14771								0	0	0	0.65896	1	11596	11596		29.15	0	1				85232	10868	59409	59501	94533	94533					0.10184084279887884
VLITYVPSL	9	Unmodified	_VLITYVPSL_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.8134460449219	2	502.804968	1003.59538	-0.54961	-0.00027635	0.26014	0.0001308	-0.28947	-0.00014555	503.30654037813144	96.044	0.90915	95.888	95.181	96.091	-0.15646					28	18	2	0	0	0	0.024354	1	11868	11868		30.504	12.179	1	2362500			85233	15459	59410	59502	94534	94534					0.09372985768243325
VLIVDSPASL	10	Unmodified	_VLIVDSPASL_					0	0	0			REV__nc|ENSG00000164451|Q5JW98-4|CALHM4	REV__nc|ENSG00000164451|Q5JW98-4|CALHM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7035217285156	2	507.297507	1012.58046	-0.4236	-0.00021489	2.0633	0.0010467	1.6397	0.0008318	507.80050305467154	32.628	0.65193	32.471	32.035	32.687	-0.15772					20	15	2	0	0	0	0.03519	1	2218	2218		42.396	0	1	283320	+		85234	36867	59411	59503	94535	94535					0.07467493900230693
VLIVFLTF	8	Unmodified	_VLIVFLTF_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	475.7508239746094	2	476.299322	950.584091	-0.4233	-0.00020162	-3.1563	-0.0015033	-3.5796	-0.0017049	476.2982104133387	31.665	0.56817	31.513	31.342	31.91	-0.15231					15	13	2	0	0	0	0.027866	1	2147	2147		46.766	0	1	157380	+		85235	19944	59412	59504	94536	94536					0.10682208464743326
VLIVHPPK	8	Unmodified	_VLIVHPPK_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	451.7699279785156	2	451.794738	901.574923	-0.91197	-0.00041202	-4.2293	-0.0019108	-5.1413	-0.0023228	451.79275080424856	21.777	0.53197	21.564	21.266	21.798	-0.2128					13	10	2	0	0	0	0.027866	1	691	691		8.8223	0	1	21544	+		85236	19173	59413	59505	94537	94537					0.12019859899078256
VLIVIAWSL	9	Unmodified	_VLIVIAWSL_					0	0	0		nc|ENSG00000187258|Q6W5P4-2|NPSR1;nc|ENSG00000187258|Q6W5P4-5|NPSR1;ENSG00000187258|ENST00000360581|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1;nc|ENSG00000187258|Q6W5P4-3|NPSR1	nc|ENSG00000187258|Q6W5P4-2|NPSR1	nc|ENSG00000187258|Q6W5P4-2|NPSR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2963562011719	2	507.323328	1012.6321	-0.26578	-0.00013484	-3.7996	-0.0019276	-4.0654	-0.0020625	507.32113435113376	61.869	0.39956	61.612	61.383	61.783	-0.25725					20	9	3	0	0	0	0.024466	1	6920	6920		25.45	0	1	253480			85237	9619	59414	59506	94538	94538					0.1262928238479617
VLIVLNGAF	9	Unmodified	_VLIVLNGAF_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.2620849609375	2	473.292028	944.569503	-0.41764	-0.00019766	-3.9477	-0.0018684	-4.3653	-0.0020661	473.29001382989884	26.016	0.64688	25.78	25.55	26.197	-0.23603					32	17	3	0	0	0	0.024517	1	1274	1274		26.796	7.4361	1	566080			85238	3461	59415	59507	94539	94539					0.09500136316614771
VLIVLNGAF	9	Unmodified	_VLIVLNGAF_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.292028	944.569503	-0.12377	-5.8578E-05	-4.1575	-0.0019677	-4.2813	-0.0020263	473.28994278098247	25.767	0.52529	25.596	25.371	25.896	-0.17078	-0.10644	-0.00038615	NaN	26.796	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461700			85239	3461	59415	59507							0.09500136316614771
VLIVVEFYRM	10	Unmodified	_VLIVVEFYRM_					0	0	0			REV__nc|ENSG00000148408|Q00975-2|CACNA1B	REV__nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.22259521484375	3	423.573898	1267.69987	-0.061406	-2.601E-05	0.46731	0.00019794	0.40591	0.00017193	423.5735101110337	29.089	0.15134	29.167	29.091	29.242	0.078344					5	3	2	0	0	0	0.03519	1	1711	1711		20.03	5.3368	1	22096	+		85240	24615	59416	59508	94540	94540					0.07672364253289743
VLIVVLTI	8	Unmodified	_VLIVVLTI_					0	0	0		ENSG00000135643|ENST00000258111|KCNMB4;ENST00000602150.2_2_19:35530007-35530163:+|nuORF;ENSG00000105711|ENST00000262631|SCN1B	ENSG00000135643|ENST00000258111|KCNMB4	ENSG00000135643|ENST00000258111|KCNMB4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	435.7922058105469	2	435.307147	868.599741	0.0050946	2.2177E-06	-3.0735	-0.0013379	-3.0684	-0.0013357	435.30582639669996	33.168	0.40238	32.968	32.73	33.133	-0.20019					15	9	2	0	0	0	0.027866	1	2335	2335		15.636	0	1	84687			85241	4920	59417	59509	94541	94541					0.16018494981790354
VLIYFIQFV	9	Unmodified	_VLIYFIQFV_					0	0	0		ENST00000554581.5_1_14:105236164-105236665:-|nuORF	ENST00000554581.5_1_14:105236164-105236665:-|nuORF	ENST00000554581.5_1_14:105236164-105236665:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.2737426757812	2	571.336436	1140.65832	-0.068163	-3.8944E-05	2.8606	0.0016344	2.7925	0.0015954	571.3387619869585	56.534	0.31385	56.367	56.245	56.558	-0.1672					10	7	2	0	0	0	0.024497	1	6130	6130		28.254	7.7724	1	96409			85242	16660	59418	59510	94542	94542					0.09361551556253289
VLIYFLIKG	9	Unmodified	_VLIYFLIKG_					0	0	0		ENST00000567806.1_1_16:27471942-27472230:-|nuORF	ENST00000567806.1_1_16:27471942-27472230:-|nuORF	ENST00000567806.1_1_16:27471942-27472230:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.3389892578125	2	533.338978	1064.6634	0.56165	0.00029955	1.3262	0.0007073	1.8878	0.0010069	533.339545522493	98.05	0.94133	97.914	97.56	98.501	-0.13626					56	22	3	0	0	0	0.97516	1	12137	12137		25.45	6.0902	1	1206100			85243	16969	59419	59511	94543	94543					0.133658554188969
VLKCLLWF	8	Unmodified	_VLKCLLWF_					0	0	0			REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF;REV__nc|ENSG00000115464|Q70CQ2-3|USP34	REV__nc|ENSG00000115464|Q70CQ2-3|USP34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2872009277344	2	511.298799	1020.58304	-0.1418	-7.2501E-05	3.929	0.0020089	3.7872	0.0019364	511.30064426161005	72.046	0.407	71.84	71.577	71.984	-0.20613					13	9	2	0	0	0	0.027866	1	8407	8407		46.766	9.738	1	96503	+		85244	33532;22206	59420	59512	94544	94544					0.07357670824194429
VLKDSNLNI	9	Unmodified	_VLKDSNLNI_					0	0	0			REV__nc|ENSG00000111319|P37088-3|SCNN1A	REV__nc|ENSG00000111319|P37088-3|SCNN1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2923278808594	2	508.292756	1014.57096	-0.18492	-9.3995E-05	-0.28081	-0.00014273	-0.46573	-0.00023673	508.2926832659402	50.447	0.92987	50.528	50.18	51.11	0.08099					93	26	5	0	0	0	0.56934	1	5276	5276		54.776	1.8396	1	48444000	+		85245	21908	59421	59513	94545	94545					0.06425725614690236
VLKEFQVLLQH	11	Unmodified	_VLKEFQVLLQH_					0	0	0		ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-3|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.9330139160156	3	451.934484	1352.78162	-0.17787	-8.0388E-05	-3.7049	-0.0016744	-3.8828	-0.0017548	451.9326727882281	97.157	2.1391	96.996	95.832	97.972	-0.16105					138	49	5	0	0	0	1.0371	1	11980	11980		28.577	1.827	1	578610			85246	1422	59422	59514	94546	94546					0.1193418293673858
VLKEKGQSL	9	Unmodified	_VLKEKGQSL_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.3029479980469	2	501.303124	1000.5917	-0.56196	-0.00028171	-0.027346	-1.3709E-05	-0.58931	-0.00029542	501.3030416609013	25.762	0.62114	25.535	25.231	25.852	-0.22683					32	14	3	0	0	0	0.14181	1	1254	1254		101.25	26.998	1	2021300			85247	3485	59423	59515	94547	94547					0.09142315994370165
VLKEKGQSL	9	Unmodified	_VLKEKGQSL_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.30291748046875	2	501.303124	1000.5917	-0.26398	-0.00013233	-0.29325	-0.00014701	-0.55722	-0.00027934	501.3029012958998	25.517	0.70069	25.346	24.997	25.698	-0.17078					35	16	3	0	0	0	0.077175	2	1207	1207;1217		118.74	19.368	1	1839800			85248	3485	59423	59515	94548;94549	94548					0.09142315994370165
VLKEKGQSL	9	Unmodified	_VLKEKGQSL_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.3030090332031	2	501.303124	1000.5917	-0.57399	-0.00028774	-0.086292	-4.3258E-05	-0.66028	-0.000331	501.30296177072506	25.587	0.86431	25.415	24.993	25.857	-0.17151					41	20	3	0	0	0	0.10464	1	1197	1197		109.48	4.7318	1	1868100			85249	3485	59423	59515	94550	94550					0.09142315994370165
VLKEKGQSL	9	Unmodified	_VLKEKGQSL_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	501.303124	1000.5917	-0.67341	-0.00033758	2.0529	0.0010291	1.3795	0.00069153	501.30386631286063	25.847	0.6397	25.824	25.443	26.083	-0.023087	0.24033	0.0020998	NaN	118.74	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70755			85250	3485	59423	59515							0.09142315994370165
VLKEKGQSL	9	Unmodified	_VLKEKGQSL_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	501.303124	1000.5917	0.27537	0.00013804	1.4107	0.00070721	1.6861	0.00084525	501.3037042305679	25.719	0.63103	25.799	25.459	26.09	0.08009	0.21532	0.0014561	NaN	118.74	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72873			85251	3485	59423	59515							0.09142315994370165
VLKEKRSL	8	Unmodified	_VLKEKRSL_					0	0	0		nc|ENSG00000137814|Q9NVX0-2|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.81365966796875	2	486.813659	971.612765	0.21446	0.0001044	-0.87224	-0.00042462	-0.65778	-0.00032022	486.81321491012056	21.41	1.0528	21.233	20.918	21.971	-0.17721					64	21	5	0	0	0	0.56311	3	670	658;670;682		79.713	5.4575	1	3666200			85252	5158	59424	59516	94551;94552;94553	94552					0.12582326093888696
VLKEKRSL	8	Unmodified	_VLKEKRSL_					0	0	0		nc|ENSG00000137814|Q9NVX0-2|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.8136901855469	2	486.813659	971.612765	-0.0018056	-8.7897E-07	-0.6097	-0.00029681	-0.61151	-0.00029769	486.8133579342013	21.59	1.0108	21.4	21.078	22.089	-0.19072					64	20	5	0	0	0	0.62178	2	676	676;699		74.255	2.9593	1	2962300			85253	5158	59424	59516	94554;94555	94554					0.12582326093888696
VLKEKRSL	8	Unmodified	_VLKEKRSL_					0	0	0		nc|ENSG00000137814|Q9NVX0-2|HAUS2;HAUS2|p.T152Sfs*3|1|0.05|ENSG00000137814|chr15:42563811-42563812|-/GAGCCAAT|frameshift_variant;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	nc|ENSG00000137814|Q9NVX0-2|HAUS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.8135681152344	2	486.813659	971.612765	-0.94213	-0.00045864	0.19038	9.268E-05	-0.75175	-0.00036596	486.8137603404704	21.599	0.96792	21.386	21.118	22.086	-0.2128					63	19	5	0	0	0	0.36844	3	669	646;657;669		101.6	0	1	3573300			85254	5158	59424	59516	94556;94557;94558	94558					0.12582326093888696
VLKESGQND	9	Unmodified	_VLKESGQND_					0	0	0			REV__ENSG00000113048|ENST00000261413|MRPS27	REV__ENSG00000113048|ENST00000261413|MRPS27	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.2596130371094	2	495.248546	988.482539	-0.16871	-8.3556E-05	-1.4851	-0.00073549	-1.6538	-0.00081905	495.2477551529534	83.152	0.59972	83.152	82.835	83.435	0					31	13	3	0	0	0	0.024319	1	10398	10398		56.721	26.217	1	257100	+		85255	22038	59425	59517	94559	94559					-0.012163146957618665
VLKGEYKL	8	Unmodified	_VLKGEYKL_					0	0	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7876281738281	2	475.289485	948.564418	2.0866	0.00099172	-0.98644	-0.00046884	1.1001	0.00052288	475.2885340333852	59.768	0.6581	59.768	59.408	60.066	0					26	17	2	0	0	0	0.027866	1	6815	6815		42.396	9.5837	1	532210	+		85256	28098	59426	59518	94560	94560					0.08807832453999254
VLKIDRTEPKD	11	Unmodified	_VLKIDRTEPKD_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	437.87506103515625	3	438.585632	1312.73507	0.44629	0.00019574	1.6446	0.00072129	2.0909	0.00091703	438.5863401002117	42.479	1.3874	42.479	41.688	43.075	0					100	39	4	0	0	0	0.024726	1	3893	3893		32.034	9.4725	1	2751800			85257	3207	59427	59519	94561	94561					0.09120698314791298
VLKIEEVCI	9	Unmodified	_VLKIEEVCI_					0	0	0		ARFGEF3|p.A139E|1|0.86|ENSG00000112379|chr6:138229848-138229848|C/A|missense_variant	ARFGEF3|p.A139E|1|0.86|ENSG00000112379|chr6:138229848-138229848|C/A|missense_variant	ARFGEF3|p.A139E|1|0.86|ENSG00000112379|chr6:138229848-138229848|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3062133789062	2	523.301736	1044.58892	-0.3005	-0.00015725	3.9908	0.0020884	3.6903	0.0019312	523.3036719773831	99.834	1.216	99.834	99.358	100.57	0					55	29	3	0	0	0	0.89441	1	12794	12794		32.812	2.4947	1	1346600			85258	117	59428	59520	94562	94562					0.06840724545190824
VLKIFQSH	8	Unmodified	_VLKIFQSH_					0	0	0			REV__nc|ENSG00000170502|Q9BW91-2|NUDT9	REV__nc|ENSG00000170502|Q9BW91-2|NUDT9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3107604980469	2	486.287277	970.560001	-0.86347	-0.00041989	2.4329	0.0011831	1.5694	0.0007632	486.288819594763	44.101	1.0451	43.996	43.622	44.667	-0.10468					38	27	2	0	0	0	0.027866	1	4178	4178		40.778	18.818	1	406220	+		85259	26480	59429	59521	94563	94563					0.0735436803107632
VLKIGKSII	9	Unmodified	_VLKIGKSII_					0	0	0			REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.8370361328125	2	485.836603	969.658653	-0.12199	-5.9267E-05	0.06596	3.2046E-05	-0.05603	-2.7221E-05	485.8365079384279	33.763	0.94017	33.538	33.239	34.179	-0.22466					65	23	4	0	0	0	0.78069	1	2418	2418		40.573	3.5441	1	5251400	+		85260	27455	59430	59522	94564	94564					0.17260971276130022
VLKIGKSII	9	Unmodified	_VLKIGKSII_					0	0	0			REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.8365783691406	2	485.836603	969.658653	-0.33934	-0.00016487	0.20807	0.00010109	-0.13127	-6.3777E-05	485.83661434416143	33.74	1.1642	33.54	33.209	34.373	-0.20019					79	29	4	0	0	0	0.78069	1	2454	2454		40.573	0	1	5154200	+		85261	27455	59430	59522	94565	94565					0.17260971276130022
VLKIGKSII	9	Unmodified	_VLKIGKSII_					0	0	0			REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.83648681640625	2	485.836603	969.658653	-1.0033	-0.00048742	0.8919	0.00043332	-0.11137	-5.4106E-05	485.8369188835123	33.741	1.1476	33.566	33.226	34.374	-0.17557					70	28	4	0	0	0	0.55828	1	2417	2417		55.504	0	1	4470500	+		85262	27455	59430	59522	94566	94566					0.17260971276130022
VLKIGKSII	9	Unmodified	_VLKIGKSII_					0	0	0			REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	REV__ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	485.836603	969.658653	-0.12199	-5.9267E-05	0.06596	3.2046E-05	-0.05603	-2.7221E-05	485.8365079384279	33.763	0.94017	33.538	33.239	34.179	-0.22466	-0.010002	-0.00023384	NaN	55.504	65	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5251400	+		85263	27455	59430	59522							0.17260971276130022
VLKIYKSEL	9	Unmodified	_VLKIYKSEL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;ENST00000480636.1_1_3:179094944-179096278:+|nuORF	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.2779541015625	2	546.8368	1091.65905	-1.0331	-0.00056492	-1.9124	-0.0010458	-2.9454	-0.0016107	546.8356253520755	30.97	1.224	31.042	30.624	31.848	0.071672					67	29	4	0	0	0	0.024292	1	1961	1961		40.778	0	1	459210			85264	8112	59431	59523	94567	94567					0.11688346205323796
VLKIYKSEL	9	Unmodified	_VLKIYKSEL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1;ENST00000480636.1_1_3:179094944-179096278:+|nuORF	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.729736328125	2	546.8368	1091.65905	-0.45698	-0.00024989	0.23071	0.00012616	-0.22627	-0.00012373	546.8367967542363	61.994	0.5146	61.737	61.383	61.898	-0.25725					19	12	2	0	0	0	0.024506	1	6895	6895		30.504	0	1	149280			85265	8112	59431	59523	94568	94568					0.11688346205323796
VLKKAPVKKLR	11	Unmodified	_VLKKAPVKKLR_					0	0	0			REV__ENST00000409410.6_3_19:38826782-38827079:+|nuORF	REV__ENST00000409410.6_3_19:38826782-38827079:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3028564453125	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.102	1	69.851	69.351	70.351	-0.25063								0	0	0	1.8	1	8158	8158		1.4188	0	1		+		85266	31958	59432	59524	94569	94569					0.2580734920395571
VLKKGLKIA	9	Unmodified	_VLKKGLKIA_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MSMS	OPSCC_39_ClassI_Rep-1	1	485.3473815917969	2	485.344595	968.674637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.09	1	110.09	109.59	110.59	0								0	0	0	0.75732	1	13996	13996		8.2313	0	1				85267	9482	59433	59525	94570	94570					0.1890467751303504
VLKKKIAN	8	Unmodified	_VLKKKIAN_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.313232421875	2	457.313295	912.612037	-1.0544	-0.00048217	0.46745	0.00021377	-0.58691	-0.0002684	457.3134766275095	44.501	1.4861	44.356	44.065	45.551	-0.14471					106	43	4	0	0	0	0.88442	1	4263	4263		52.299	0	1	12904000	+		85268	23724	59434	59526	94571	94571					0.1522353144483759
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	419.315673828125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.03	1	112.03	111.53	112.53	0								0	0	0	0.77833	1	14120	14120		0.48304	0	1				85269	15877	59435	59527	94572	94572					0.3054822610067731
VLKKKKKKKK	10	Unmodified	_VLKKKKKKKK_					0	0	0		ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	ENST00000522197.1_1_8:122652185-122654912:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	419.31524658203125	3	419.314859	1254.92275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.9	1	111.76	111.26	112.26	-0.14545								0	0	0	0.77833	1	13611	13611		0.48304	0	1				85270	15877	59435	59527	94573	94573					0.3054822610067731
VLKKLFPK	8	Unmodified	_VLKKLFPK_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.8135681152344	2	486.833863	971.653173	0.22583	0.00010994	0.52058	0.00025344	0.74641	0.00036338	486.83384890987946	21.456	0.33198	21.279	21.113	21.445	-0.17721					9	6	2	0	0	0	0.027866	1	695	695		44.531	0	1	17355			85271	4214	59436	59528	94574	94574					0.16621292484308015
VLKKLKMS	8	Unmodified	_VLKKLKMS_					0	0	0		ENST00000442018.5_2_X:39911364-39913101:-|nuORF;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR	ENST00000442018.5_2_X:39911364-39913101:-|nuORF	ENST00000442018.5_2_X:39911364-39913101:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.7784118652344	2	473.809531	945.604509	0.28506	0.00013506	2.3191	0.0010988	2.6042	0.0012339	473.8108961655914	24.07	0.17236	24.07	23.994	24.166	0					5	3	2	0	0	0	0.027866	1	1025	1025		4.3163	0	1	12645			85272	9218	59437	59529	94575	94575					0.1295305585291544
VLKKLTTL	8	Unmodified	_VLKKLTTL_					0	0	0			REV__ENST00000374787.7_1_9:106891992-106892061:+|nuORF	REV__ENST00000374787.7_1_9:106891992-106892061:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.24713134765625	2	458.315503	914.616454	-0.8954	-0.00041037	-0.18728	-8.5835E-05	-1.0827	-0.00049621	458.31526083965775	44.102	0.4211	43.958	43.71	44.131	-0.14471					14	11	2	0	0	0	0.027866	1	4137	4137		25.45	0	1	190400	+		85273	31308	59438	59530	94576	94576					0.15572995867739792
VLKKLTTL	8	Unmodified	_VLKKLTTL_					0	0	0			REV__ENST00000374787.7_1_9:106891992-106892061:+|nuORF	REV__ENST00000374787.7_1_9:106891992-106892061:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.315503	914.616454	-0.69783	-0.00031983	0.57762	0.00026473	-0.12021	-5.5096E-05	458.3155431376761	43.929	0.3238	43.929	43.765	44.089	0	-0.038815	0.00061622	NaN	25.45	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196400	+		85274	31308	59438	59530							0.15572995867739792
VLKKNGQAR	9	Unmodified	_VLKKNGQAR_					0	0	0			REV__ENSG00000130119|ENST00000360845|GNL3L	REV__ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2950744628906	2	507.314358	1012.61416	-0.96166	-0.00048786	-1.4534	-0.00073735	-2.4151	-0.0012252	507.3135550709978	21.455	0.33654	21.455	21.293	21.63	0					10	6	2	0	0	0	0.024457	1	645	645		37.159	16.677	1	21944	+		85275	23082	59439	59531	94577	94577					0.108359601826578
VLKKRCKD	8	Unmodified	_VLKKRCKD_					0	0	0		ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.2867431640625	2	495.299862	988.58517	-0.96395	-0.00047745	1.4428	0.00071462	0.47884	0.00023717	495.30077900140645	51.662	0.23545	51.393	51.203	51.438	-0.26903					8	5	2	0	0	0	0.027866	1	5295	5295		45.952	21.749	1	43187			85276	8145	59440	59532	94578	94578					0.0904209956199793
VLKKRIAEL	9	Unmodified	_VLKKRIAEL_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2604370117188	2	535.358234	1068.70191	-0.52201	-0.00027946	-0.38226	-0.00020465	-0.90427	-0.00048411	535.3579594234687	55.622	0.28733	55.406	55.237	55.525	-0.21607					11	7	2	0	0	0	0.024535	1	5989	5989		25.45	0	1	95653	+		85277	19687	59441	59533	94579	94579					0.1703116105340996
VLKKRRLS	8	Unmodified	_VLKKRRLS_					0	0	0		ENSG00000115008|ENST00000263339|IL1A	ENSG00000115008|ENST00000263339|IL1A	ENSG00000115008|ENST00000263339|IL1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.80596923828125	2	500.342918	998.671283	-0.42176	-0.00021103	-2.6816	-0.0013417	-3.1034	-0.0015528	500.8453829013238	59.746	0.17868	59.831	59.728	59.906	0.085686					6	4	2	0	0	0	0.027866	1	6748	6748		13.775	5.544	1	79076			85278	3402	59442	59534	94580	94580					0.1718942745902723
VLKLRITRRFF	11	Unmodified	_VLKLRITRRFF_					0	0	0			REV__nc|ENSG00000186951|Q07869-2|PPARA	REV__nc|ENSG00000186951|Q07869-2|PPARA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.6463928222656	3	483.645267	1447.91397	0.20024	9.6846E-05	2.4071	0.0011642	2.6074	0.001261	483.64633390828976	46.582	1.5588	46.485	46.259	47.818	-0.096649					170	42	6	0	0	0	1.1077	1	4505	4505		9.2118	1.8121	1	30354000	+		85279	27899	59443	59535	94581	94581					0.20793252464181933
VLKLRITRRFF	11	Unmodified	_VLKLRITRRFF_					0	0	0			REV__nc|ENSG00000186951|Q07869-2|PPARA	REV__nc|ENSG00000186951|Q07869-2|PPARA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	483.6468200683594	3	483.645267	1447.91397	-0.11273	-5.4519E-05	2.6678	0.0012903	2.5551	0.0012358	483.64647688807395	46.72	1.5498	46.526	46.345	47.895	-0.19387					182	42	5	0	0	0	1.0921	1	4534	4534		13.508	3.404	1	10437000	+		85280	27899	59443	59535	94582	94582					0.20793252464181933
VLKMIHKN	8	Unmodified	_VLKMIHKN_					0	0	0			REV__RASGRP3|p.R422M|1|0.31|ENSG00000152689|chr2:33539197-33539197|G/T|missense_variant	REV__RASGRP3|p.R422M|1|0.31|ENSG00000152689|chr2:33539197-33539197|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7958068847656	2	491.796955	981.579357	0.18124	8.9134E-05	-2.4802	-0.0012198	-2.299	-0.0011306	491.7954877774719	47.616	1.6243	47.429	46.316	47.94	-0.18684					123	44	5	0	0	0	0.96719	1	4734	4734		42.474	8.9589	1	5640400	+		85281	37429	59444	59536	94583	94583					0.08783001050335315
VLKMWKLV	8	Unmodified	_VLKMWKLV_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.3158264160156	2	508.819899	1015.62524	-0.14368	-7.3105E-05	-1.8992	-0.00096636	-2.0429	-0.0010395	509.3208528593036	104.42	0.59348	104.42	104.12	104.71	0					18	14	2	0	0	0	0.027866	1	13435	13435		35.201	6.0512	1	43457			85282	9402	59445	59537	94584	94584					0.11805646232585332
VLKNLQTYL	9	Unmodified	_VLKNLQTYL_					0	0	0		NIPBL-WDR70|1|fusion;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MSMS	OPSCC_39_ClassI_Rep-2	2	546.3269653320312	2	546.326599	1090.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.567	1	64.304	63.804	64.804	-0.2626								0	0	0	0.51175	1	7573	7573		51.335	3.6781	1				85283	18873	59446	59538	94585	94585					0.0969517554549384
VLKNLQTYL	9	Unmodified	_VLKNLQTYL_					0	0	0		NIPBL-WDR70|1|fusion;nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.A2781Dfs*2|1|0.17|ENSG00000164190|chr5:37064817-37064827|TGCTAATAAGC/-|frameshift_variant;ENSG00000164190|ENST00000282516|NIPBL	NIPBL-WDR70|1|fusion	NIPBL-WDR70|1|fusion	MSMS	OPSCC_39_ClassI_Rep-3	3	546.32763671875	2	546.326599	1090.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.192	1	64.238	63.738	64.738	0.045502								0	0	0	0.40817	1	7467	7467		60.972	2.742	1				85284	18873	59446	59538	94586	94586					0.0969517554549384
VLKPHIIEP	9	Unmodified	_VLKPHIIEP_					0	0	0			REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	REV__nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3240966796875	2	523.32386	1044.63317	-0.16436	-8.6012E-05	-0.40606	-0.0002125	-0.57042	-0.00029851	523.3236606525719	71.83	1.3883	71.83	71.185	72.573	0					117	35	5	0	0	0	0.36105	1	8751	8751		68.485	9.7027	1	15698000	+		85285	26573	59447	59539	94587	94587					0.1126349675369056
VLKQHFND	8	Unmodified	_VLKQHFND_					0	0	0		ENST00000511386.1_1_5:99285077-99285230:-|nuORF;nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3	ENST00000511386.1_1_5:99285077-99285230:-|nuORF	ENST00000511386.1_1_5:99285077-99285230:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3128356933594	2	500.764166	999.513779	-0.48229	-0.00024151	0.75244	0.0003768	0.27016	0.00013529	500.76589821953456	76.334	0.23301	76.106	75.927	76.16	-0.22843					7	5	2	0	0	0	0.027866	1	9345	9345		33.516	4.366	1	31658			85286	8634	59448	59540	94588	94588					0.01400303128991709
VLKRYRDA	8	Unmodified	_VLKRYRDA_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;ENST00000580251.1_1_17:8169604-8170225:+|nuORF	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2893371582031	2	510.801083	1019.58761	0.5093	0.00026015	-0.83784	-0.00042797	-0.32855	-0.00016782	510.80108139519245	50.98	0.22417	50.799	50.61	50.834	-0.18071					8	5	2	0	0	0	0.027866	1	5201	5201		24.203	0	1	78379			85287	8844	59449	59541	94589	94589					0.07860271291315257
VLKSAPRDQRL	11	Unmodified	_VLKSAPRDQRL_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	641.8846435546875	2	641.883136	1281.75172	1.1008	0.00070659	-1.6366	-0.0010505	-0.5358	-0.00034392	641.8818200654002	105.72	0.56815	105.72	105.35	105.92	-0.0013123					32	20	2	0	0	0	1.0238	1	13537	13537		31.53	2.3598	1	192210	+		85288	23315	59450	59542	94590	94590					0.12211243991396259
VLKSAPRDQRL	11	Unmodified	_VLKSAPRDQRL_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	641.883136	1281.75172	-0.92919	-0.00059643	0.37306	0.00023946	-0.55613	-0.00035697	641.8832283038703	105.9	0.30985	105.76	105.65	105.96	-0.1328	-0.0021399	0.0014021	NaN	31.53	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129160	+		85289	23315	59450	59542							0.12211243991396259
VLKSAPRDQRL	11	Unmodified	_VLKSAPRDQRL_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	641.883136	1281.75172	0.061656	3.9576E-05	-1.0656	-0.00068402	-1.004	-0.00064444	641.8825269270669	105.98	0.3097	105.82	105.69	106	-0.16132	0.04965	-0.00044482	NaN	31.53	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125020	+		85290	23315	59450	59542							0.12211243991396259
VLKSISVID	9	Unmodified	_VLKSISVID_					0	0	0		ENSG00000103966|ENST00000220325|EHD4;ENST00000569223.1_1_15:42235208-42264692:-|nuORF	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.8026123046875	2	487.30005	972.585547	0.62845	0.00030624	-3.654	-0.0017806	-3.0256	-0.0014744	487.2981308051146	88.722	0.42558	88.695	88.476	88.901	-0.027657					14	9	2	0	0	0	0.024427	1	11137	11137		34.173	7.3764	1	52892			85291	2534	59451	59543	94591	94591					0.09815797762848888
VLKSLRLL	8	Unmodified	_VLKSLRLL_					0	0	0		SLIT2|p.G823V|1|0.23|ENSG00000145147|chr4:20549107-20549107|G/T|missense_variant	SLIT2|p.G823V|1|0.23|ENSG00000145147|chr4:20549107-20549107|G/T|missense_variant	SLIT2|p.G823V|1|0.23|ENSG00000145147|chr4:20549107-20549107|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.78814697265625	2	471.328945	940.643337	0.018165	8.5616E-06	-1.5266	-0.00071955	-1.5085	-0.00071099	471.3280681392596	23.715	0.42501	23.715	23.441	23.866	0					13	9	2	0	0	0	0.027866	1	954	954		3.1592	1.8316	1	90602			85292	37899	59452	59544	94592	94592					0.17064104478936315
VLKSNYMK	8	Unmodified	_VLKSNYMK_					0	0	0			REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	REV__PRTG|p.F1056Sfs*30|1|0.33|ENSG00000166450|chr15:55620694-55620694|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.7925109863281	2	491.773145	981.531738	-0.53751	-0.00026433	0.047058	2.3142E-05	-0.49045	-0.00024119	491.7731761762408	37.691	0.64881	37.501	37.08	37.728	-0.18972					25	16	2	0	0	0	0.027866	1	3044	3044		24.203	6.8378	1	162330	+		85293	26018	59453	59545	94593	94593					0.04023302059488287
VLKVGHASL	9	Unmodified	_VLKVGHASL_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	462.2876892089844	2	462.287277	922.560001	1.0941	0.00050578	-0.64818	-0.00029964	0.44591	0.00020614	462.28699399765384	59.462	0.77258	59.462	59.108	59.88	0					57	20	4	0	0	0	0.35646	1	6776	6776		68.787	10.005	1	6074900	+		85294	20842	59454	59546	94594	94594					0.09562368031083679
VLKVGHASL	9	Unmodified	_VLKVGHASL_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	462.287841796875	2	462.287277	922.560001	0.7174	0.00033165	-0.24353	-0.00011258	0.47387	0.00021907	462.28718933821114	59.597	1.0144	59.397	58.816	59.83	-0.20016					62	27	4	0	0	0	0.20967	2	6796	6796;6811		87.754	5.4493	1	4814200	+		85295	20842	59454	59546	94595;94596	94595					0.09562368031083679
VLKVGHASL	9	Unmodified	_VLKVGHASL_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	462.287277	922.560001	1.0941	0.00050578	-0.64818	-0.00029964	0.44591	0.00020614	462.28699399765384	59.462	0.77258	59.462	59.108	59.88	0	0.052153	-0.00021053	NaN	87.754	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6074900	+		85296	20842	59454	59546							0.09562368031083679
VLKVGHPI	8	Unmodified	_VLKVGHPI_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-2|SPOCD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	431.7245788574219	2	431.779088	861.543623	0.36294	0.00015671	-0.1692	-7.3057E-05	0.19374	8.3654E-05	431.7789797861488	36.213	0.28168	35.997	35.845	36.126	-0.21661					10	7	2	0	0	0	0.027866	1	2819	2819		13.775	4.3048	1	81188	+		85297	23469	59455	59547	94597	94597					0.10731286864995582
VLKVLSDLL	9	Unmodified	_VLKVLSDLL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.31329345703125	2	500.326068	998.637583	-0.47676	-0.00023854	3.4691	0.0017357	2.9923	0.0014971	500.3280403479217	76.369	0.44321	76.14	76.041	76.485	-0.22843					18	10	3	0	0	0	0.024374	1	9417	9417		40.778	3.6191	1	371300			85298	4956	59456	59548	94598	94598					0.1382096117661149
VLKYQIVE	8	Unmodified	_VLKYQIVE_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.7668762207031	2	496.294768	990.574983	-0.15516	-7.7005E-05	0.068391	3.3942E-05	-0.08677	-4.3063E-05	496.29456570598103	52.763	0.55671	52.573	52.348	52.905	-0.18982					24	13	2	0	0	0	0.027866	1	5485	5485		26.796	0	1	243760	+		85299	28479	59457	59549	94599	94599					0.0793181510841805
VLLADPESF	9	Unmodified	_VLLADPESF_					0	0	0			REV__nc|ENSG00000135625|Q05215|EGR4	REV__nc|ENSG00000135625|Q05215|EGR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.7625732421875	2	495.760758	989.506963	0.84961	0.0004212	0.14034	6.9575E-05	0.98995	0.00049078	495.7609657176907	64.294	1.5456	64.294	63.88	65.426	0					100	42	5	0	0	0	0.52323	1	7585	7585		57.811	4.4598	1	10712000	+		85300	36691	59458	59550	94600	94600					0.011789454577638026
VLLAESVFE	9	Unmodified	_VLLAESVFE_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7927551269531	2	503.776408	1005.53826	-0.21542	-0.00010852	1.9267	0.00097064	1.7113	0.00086211	504.2790232343599	64.263	0.79654	64.036	63.7	64.497	-0.22773					37	19	3	0	0	0	0.024354	1	7281	7281		23.042	0	1	123920	+		85301	21509	59459	59551	94601	94601					0.03571518491855841
VLLAGPPGT	9	Unmodified	_VLLAGPPGT_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.746337890625	2	412.747453	823.480354	0.53661	0.00022148	-3.6343	-0.0015	-3.0976	-0.0012785	412.7458595051266	84.56	2.4958	84.357	83.567	86.063	-0.20329					121	58	4	0	0	0	0.88411	1	10207	10207		33.516	1.5607	1	8025800			85302	8589	59460	59552	94602	94602					0.06155301357091503
VLLAGPPGT	9	Unmodified	_VLLAGPPGT_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	412.747453	823.480354	0.66518	0.00027455	-3.7783	-0.0015595	-3.1131	-0.0012849	412.74581110347407	84.535	2.0721	84.397	83.629	85.702	-0.13789	0.017386	-0.00023279	NaN	33.516	118	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4796400			85303	8589	59460	59552							0.06155301357091503
VLLAKCLL	8	Unmodified	_VLLAKCLL_					0	0	0		ENSG00000116176|ENST00000234798|TPSG1	ENSG00000116176|ENST00000234798|TPSG1	ENSG00000116176|ENST00000234798|TPSG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.77508544921875	2	436.785524	871.556496	0.36673	0.00016018	-3.1179	-0.0013619	-2.7512	-0.0012017	436.7838817791501	89.974	0.2038	89.958	89.795	89.999	-0.016708					5	4	2	0	0	0	0.027866	1	11314	11314		20.482	0	1	130310			85304	3529	59461	59553	94603	94603					0.11557981932867278
VLLAKCLL	8	Unmodified	_VLLAKCLL_					0	0	0		ENSG00000116176|ENST00000234798|TPSG1	ENSG00000116176|ENST00000234798|TPSG1	ENSG00000116176|ENST00000234798|TPSG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	436.7747802734375	2	436.785524	871.556496	0.67589	0.00029522	3.0818	0.0013461	3.7577	0.0016413	436.78665346868917	90.195	0.32124	90.057	89.835	90.156	-0.13824					12	7	2	0	0	0	0.027866	1	11022	11022		26.796	0	1	171960			85305	3529	59461	59553	94604	94604					0.11557981932867278
VLLAKESL	8	Unmodified	_VLLAKESL_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	436.7747497558594	2	436.776211	871.537869	0.53541	0.00023385	-3.9142	-0.0017096	-3.3788	-0.0014758	436.77442646981	90.011	2.1118	90.025	89.55	91.662	0.013443					149	50	5	0	0	0	1.0239	1	11350	11350		33.516	0	1	34213000			85306	10919	59462	59554	94605	94605					0.09696143562666748
VLLALKLRRWH	11	Unmodified	_VLLALKLRRWH_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.2766418457031	3	468.969863	1403.88776	-0.51045	-0.00023938	3.6271	0.001701	3.1166	0.0014616	468.97133207949565	49.469	1.025	49.543	49.022	50.047	0.074196					50	27	3	0	0	0	0.024869	1	5084	5084		6.3209	0	1	126440			85307	10959	59463	59555	94606	94606					0.20196983292726145
VLLAPTPPGKN	11	Unmodified	_VLLAPTPPGKN_					0	0	0		ENSG00000142025|ENST00000269945|DMRTC2	ENSG00000142025|ENST00000269945|DMRTC2	ENSG00000142025|ENST00000269945|DMRTC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8309326171875	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0442	1	10814	10814		26.693	8.3685	1	6583300			85308	5533	59464	59556	94607	94607					0.10094577919812764
VLLARLQP	8	Unmodified	_VLLARLQP_					0	0	0			REV__nc|ENSG00000101417|Q9Y6I8-2|PXMP4	REV__nc|ENSG00000101417|Q9Y6I8-2|PXMP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	455.7590026855469	2	455.297645	908.580737	0.39226	0.0001786	0.041971	1.9109E-05	0.43424	0.00019771	455.2974920055351	23.522	0.60015	23.32	22.967	23.567	-0.20193					28	13	3	0	0	0	0.027866	1	926	926		21.702	1.2205	1	163430	+		85309	21232	59465	59557	94608	94608					0.1227895841074087
VLLAVVHALGA	11	Unmodified	_VLLAVVHALGA_					0	0	0			REV__ENST00000354190.9_1_11:73366948-73372760:+|nuORF	REV__ENST00000354190.9_1_11:73366948-73372760:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8350830078125	2	531.837134	1061.65972	-0.51233	-0.00027247	-3.4505	-0.0018351	-3.9629	-0.0021076	531.8350949499164	104.36	0.51607	104.36	104.16	104.68	0					27	12	3	0	0	0	1.0533	1	13397	13397		24.203	0	1	196300	+		85310	30750	59466	59558	94609	94609					0.1313518564502374
VLLCSKSLSL	10	Unmodified	_VLLCSKSLSL_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8163452148438	2	531.81501	1061.61547	-0.094811	-5.0422E-05	3.426	0.001822	3.3312	0.0017716	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.98754	1	10618	10618		47.657	0	1	4853400			85311	9475	59467	59559	94610	94610					0.0871241343654674
VLLCSKSLSL	10	Unmodified	_VLLCSKSLSL_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8169555664062	2	531.81501	1061.61547	-0.11038	-5.8701E-05	3.3846	0.0018	3.2743	0.0017413	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.91678	2	10759	10650;10759		52.937	1.6012	1	4521600			85312	9475	59467	59559	94611;94612	94612					0.0871241343654674
VLLDAPIQL	9	Unmodified	_VLLDAPIQL_					0	0	0		ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.3026428222656	2	491.302593	980.590633	0.38327	0.0001883	-0.46082	-0.0002264	-0.077543	-3.8097E-05	491.30236774869115	87.512	1.8685	87.512	86.899	88.767	0					105	44	5	0	0	0	0.014013	4	11020	10995;11007;11020;11033		166.78	55.134	1	5850800			85313	8	59468	59560	94613;94614;94615;94616	94615					0.09956101625471092
VLLDAPIQL	9	Unmodified	_VLLDAPIQL_					0	0	0		ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.3023986816406	2	491.302593	980.590633	0.33828	0.0001662	-0.47745	-0.00023457	-0.13917	-6.8374E-05	491.30234438466783	87.491	1.9101	87.455	87.068	88.978	-0.035355					107	45	5	0	0	0	0.012965	4	10971	10960;10971;10983;10996		191.63	71.005	1	5863900			85314	8	59468	59560	94617;94618;94619;94620	94618					0.09956101625471092
VLLDAPIQL	9	Unmodified	_VLLDAPIQL_					0	0	0		ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.3026123046875	2	491.302593	980.590633	0.72161	0.00035453	-0.84757	-0.00041641	-0.12596	-6.1884E-05	491.3021607495425	87.478	1.6637	87.5	87.137	88.801	0.021263					102	39	5	0	0	0	0.01471	4	10930	10918;10930;10943;10955		187.63	68.077	1	6321500			85315	8	59468	59560	94621;94622;94623;94624	94622					0.09956101625471092
VLLDAPIQL	9	Unmodified	_VLLDAPIQL_					0	0	0		ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.302490234375	2	491.302593	980.590633	-0.62062	-0.00030491	0.56749	0.00027881	-0.053135	-2.6106E-05	491.3028407111625	87.518	1.0537	87.339	87.028	88.082	-0.17875					57	25	4	0	0	0	0.12602	2	10641	10624;10641		104.75	13.998	1	1966300			85316	8	59468	59560	94625;94626	94626					0.09956101625471092
VLLDAPIQL	9	Unmodified	_VLLDAPIQL_					0	0	0		ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.3023376464844	2	491.302593	980.590633	0.56145	0.00027584	-0.72843	-0.00035788	-0.16699	-8.2042E-05	491.30223163230545	87.461	1.1393	87.325	87.009	88.148	-0.13614					81	27	6	0	0	0	0.082191	2	10643	10643;10655		116.9	34.599	1	1984300			85317	8	59468	59560	94627;94628	94627					0.09956101625471092
VLLDAPIQL	9	Unmodified	_VLLDAPIQL_					0	0	0		ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ABCF3|p.T145Rfs*36|1|0.06|ENSG00000161204|chr3:184187748-184187749|-/GAGAACATCT|frameshift_variant;nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	ENST00000485921.5_1_3:183903968-183904686:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.3025207519531	2	491.302593	980.590633	0.19243	9.4541E-05	-0.33354	-0.00016387	-0.14111	-6.933E-05	491.30235991176954	87.462	1.2372	87.325	86.995	88.232	-0.13734					67	29	4	0	0	0	0.082191	2	10628	10616;10628		116.9	26.127	1	1866200			85318	8	59468	59560	94629;94630	94630					0.09956101625471092
VLLDEGLVP	9	Unmodified	_VLLDEGLVP_					0	0	0		ENSG00000205221|ENST00000379242|VIT	ENSG00000205221|ENST00000379242|VIT	ENSG00000205221|ENST00000379242|VIT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.77935791015625	2	477.778951	953.543348	0.22121	0.00010569	-0.016132	-7.7077E-06	0.20508	9.7983E-05	477.7786265770096	100.93	0.57929	100.76	100.57	101.15	-0.17178					29	15	3	0	0	0	0.64155	1	12530	12530		50.025	7.5501	1	143740			85319	10410	59469	59561	94631	94631					0.06471822354467349
VLLDILSAPG	10	Unmodified	_VLLDILSAPG_					0	0	0			REV__ANKRD27|p.Q475P|1|0.32|ENSG00000105186|chr19:32626824-32626824|T/G|missense_variant	REV__ANKRD27|p.Q475P|1|0.32|ENSG00000105186|chr19:32626824-32626824|T/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2529296875	2	499.30005	996.585547	-0.00094006	-4.6937E-07	0.087062	4.347E-05	0.086122	4.3001E-05	499.2999447813271	95.514	0.68518	95.514	95.222	95.907	0					27	15	2	0	0	0	0.03519	1	12210	12210		23.042	6.5693	1	149280	+		85320	19141	59470	59562	94632	94632					0.08711797762850892
VLLDLEPRVI	10	Unmodified	_VLLDLEPRVI_					0	0	0		ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2;ENST00000589613.1_1_17:40761741-40762767:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF	ENSG00000131462|ENST00000251413|TUBG1	ENSG00000131462|ENST00000251413|TUBG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.8591918945312	2	583.860806	1165.70706	-0.716	-0.00041804	-2.5967	-0.0015161	-3.3127	-0.0019342	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	1.1329	1	11997	11997		27.882	1.1893	1	1429300			85321	4526	59471	59563	94633	94633					0.1308342012534922
VLLDNLPGV	9	Unmodified	_VLLDNLPGV_					0	0	0		nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU;ENST00000503952.5_1_4:128606686-128637588:+|nuORF	nc|ENSG00000164066|Q9ULD6-4|INTU	nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2796325683594	2	470.279118	938.543683	0.86215	0.00040545	-0.066088	-3.108E-05	0.79607	0.00037437	470.278938519176	75.58	1.5245	75.59	75.25	76.774	0.010376					85	39	4	0	0	0	0.25032	1	9219	9219		82.305	5.4584	1	3647200			85322	7201	59472	59564	94634	94634					0.07195242074340058
VLLDPPLIAL	10	Unmodified	_VLLDPPLIAL_					0	0	0		ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	ENSG00000171603|ENST00000377298|CLSTN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7968139648438	2	532.341718	1062.66888	-0.42814	-0.00022792	0.16431	8.7467E-05	-0.26383	-0.00014045	532.3418339132276	100.65	0.64129	100.65	100.26	100.9	0					18	14	2	0	0	0	0.03519	1	12866	12866		53.351	16.192	1	96980			85323	8175	59473	59565	94635	94635					0.1400553421069617
VLLDTVETL	9	Unmodified	_VLLDTVETL_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2	REV__ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7890319824219	2	501.789515	1001.56448	0.39693	0.00019918	-0.39411	-0.00019776	0.0028252	1.4177E-06	501.7891433083652	99.616	0.60301	99.616	99.268	99.871	0					29	13	3	0	0	0	0.59099	1	12755	12755		53.351	2.016	1	558770	+		85324	20281	59474	59566	94636	94636					0.06375787663341725
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	631.84326171875	2	631.842613	1261.67067	-0.59047	-0.00037309	0.77367	0.00048884	0.1832	0.00011575	631.8429788825928	77.845	0.98616	77.861	77.578	78.564	0.015907					57	23	3	0	0	0	0.19121	1	9554	9554		122.18	37.26	1	1260800			85325	2377	59475	59567	94637	94637					0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	631.842613	1261.67067	0.16084	0.00010162	0.081054	5.1213E-05	0.24189	0.00015284	631.8424633042983	77.831	0.97873	77.831	77.51	78.489	0	0.097876	-9.2764E-05	NaN	122.18	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385300			85326	2377	59475	59567							0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	631.842613	1261.67067	1.3001	0.00082148	-1.1156	-0.0007049	0.18452	0.00011659	631.8417499408063	77.936	1.0688	77.725	77.418	78.487	-0.21087	-0.0086655	-0.001605	NaN	122.18	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1451100			85327	2377	59475	59567							0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	631.842613	1261.67067	-0.74032	-0.00046777	0.97997	0.00061919	0.23965	0.00015142	631.8429633683782	77.963	0.50577	77.701	77.485	77.991	-0.26202	-0.03212	0.0010432	NaN	122.18	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456710			85328	2377	59475	59567							0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	631.842613	1261.67067	0.20049	0.00012668	-0.19466	-0.000123	0.005826	3.6811E-06	631.8423259593567	77.874	0.76043	77.632	77.362	78.123	-0.24232	-0.10202	-0.00044118	NaN	122.18	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609630			85329	2377	59475	59567							0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	631.842613	1261.67067	-0.3542	-0.0002238	0.19404	0.00012261	-0.16016	-0.00010119	631.8426274193284	77.813	0.63942	77.651	77.355	77.994	-0.16196	-0.082561	5.0021E-05	NaN	122.18	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497450			85330	2377	59475	59567							0.05030543228667739
VLLEDGLSL	9	Unmodified	_VLLEDGLSL_					0	0	0			REV__ENSG00000133401|ENST00000438447|PDZD2	REV__ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.7757568359375	2	479.776408	957.538263	0.17588	8.4383E-05	1.1127	0.00053383	1.2885	0.00061821	479.77652803261265	79.68	0.46397	79.68	79.447	79.911	0					25	10	3	0	0	0	0.15889	1	9898	9898		97.473	15.168	1	470370	+		85331	23370	59476	59568	94638	94638					0.057795184918632
VLLEEGPAI	9	Unmodified	_VLLEEGPAI_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2;REV__nc|ENSG00000116731|Q13029-4|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.2801208496094	2	470.771126	939.527698	-0.60881	-0.00028661	3.1263	0.0014718	2.5175	0.0011852	470.7723165280038	75.529	0.38935	75.529	75.307	75.696	0					21	10	3	0	0	0	0.024262	1	9271	9271		68.485	22.533	1	364670	+		85332	22298;36592	59477	59569	94639	94639					0.05551535837423671
VLLEELEAL	9	Unmodified	_VLLEELEAL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.796630859375	2	514.79734	1027.58013	-0.40356	-0.00020775	1.0151	0.00052257	0.61154	0.00031482	514.7975586048747	91.712	0.82302	91.7	91.447	92.27	-0.012383					49	19	4	0	0	0	0.33245	1	11587	11587		71.296	7.9894	1	586100			85333	4266	59478	59570	94640	94640					0.06744074180369353
VLLEELEAL	9	Unmodified	_VLLEELEAL_					0	0	0		nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;AKAP9|p.D2313Efs*5|1|0.12|ENSG00000127914|chr7:92077868-92077869|-/AATCAGAGCC|frameshift_variant	nc|ENSG00000127914|Q99996-5|AKAP9	nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.7968139648438	2	514.79734	1027.58013	-0.022078	-1.1366E-05	0.53764	0.00027678	0.51557	0.00026541	514.7973868281068	91.729	0.78075	91.738	91.485	92.265	0.009407					56	18	4	0	0	0	0.62163	1	11546	11546		51.335	6.9583	1	534330			85334	4266	59478	59570	94641	94641					0.06744074180369353
VLLEHRTI	8	Unmodified	_VLLEHRTI_					0	0	0		TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant;ENSG00000104321|ENST00000262209|TRPA1	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	TRPA1|p.T673Hfs*23|1|0.11|ENSG00000104321|chr8:72046557-72046557|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	491.3137512207031	2	490.798009	979.581465	0.20869	0.00010242	-0.4181	-0.0002052	-0.20941	-0.00010278	490.7974597908762	22.29	0.24319	22.088	21.951	22.194	-0.20199					8	4	2	0	0	0	0.027866	1	731	731		14.664	0	1	25043			85335	2559	59479	59571	94642	94642					0.09085753059810031
VLLELQQHL	9	Unmodified	_VLLELQQHL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.825927734375	2	546.824224	1091.63389	-1.6043	-0.00087724	1.8343	0.001003	0.23005	0.0001258	546.8252279614363	65.309	0.74652	65.036	64.786	65.532	-0.27282					44	20	3	0	0	0	0.16468	1	7689	7689		96.19	21.935	1	1670500			85336	9105	59480	59572	94643	94643					0.09174291402769086
VLLELQQHL	9	Unmodified	_VLLELQQHL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8245239257812	2	546.824224	1091.63389	-1.1628	-0.00063584	1.2444	0.00068045	0.081568	4.4603E-05	546.8249093266359	65.023	0.53751	65.061	64.817	65.355	0.037376					42	14	4	0	0	0	0.26966	1	7605	7605		79.713	22.992	1	2739400			85337	9105	59480	59572	94644	94644					0.09174291402769086
VLLELQQHL	9	Unmodified	_VLLELQQHL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.824224	1091.63389	-1.5855	-0.00086701	1.81	0.00098973	0.22442	0.00012272	546.8251462237022	65.004	0.73128	65.004	64.763	65.494	0	-0.045165	-0.0001281	NaN	96.19	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2110700			85338	9105	59480	59572							0.09174291402769086
VLLELQQHL	9	Unmodified	_VLLELQQHL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.824224	1091.63389	-0.61815	-0.00033802	2.2307	0.0012198	1.6125	0.00088177	546.8252438301649	65.268	0.48793	65.034	64.849	65.337	-0.2345	-0.015966	0.00033203	NaN	96.19	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406390			85339	9105	59480	59572							0.09174291402769086
VLLELQQHL	9	Unmodified	_VLLELQQHL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.824224	1091.63389	-1.4951	-0.00081754	2.7451	0.0015011	1.2501	0.00068357	546.8256994631937	65.312	0.48866	65.109	64.818	65.307	-0.20254	0.0596	0.00089465	NaN	96.19	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275700			85340	9105	59480	59572							0.09174291402769086
VLLELQQHL	9	Unmodified	_VLLELQQHL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.824224	1091.63389	-0.87878	-0.00048054	2.2177	0.0012127	1.3389	0.00073216	546.825331036337	65.304	0.44732	65.053	64.864	65.312	-0.25112	0.0035176	0.00031785	NaN	96.19	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462600			85341	9105	59480	59572							0.09174291402769086
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2940063476562	2	539.294965	1076.57538	-0.97764	-0.00052724	0.16386	8.8367E-05	-0.81378	-0.00043887	539.2950825672216	80.866	1.7038	80.866	80.205	81.909	0					101	41	5	0	0	0	0.013333	6	10048	10038;10048;10059;10071;10083;10098		191.63	74.722	1	7192800			85342	16753	59481	59573	94645;94646;94647;94648;94649;94650	94646					0.04015190037625871
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.2952270507812	2	539.294965	1076.57538	-1.3791	-0.00074376	0.43622	0.00023525	-0.94292	-0.00050851	539.2953011005633	81.042	1.4995	80.911	80.322	81.821	-0.13075					96	36	5	0	0	0	0.013333	6	10037	10027;10037;10049;10060;10073;10087		176.41	71.664	1	7121500			85343	16753	59481	59573	94651;94652;94653;94654;94655;94656	94652					0.04015190037625871
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.2947998046875	2	539.294965	1076.57538	-1.5809	-0.00085255	0.70362	0.00037946	-0.87724	-0.00047309	539.2953422606176	80.867	1.3691	80.891	80.488	81.857	0.023911					99	33	5	0	0	0	0.013333	6	9971	9961;9971;9983;9995;10009;10022		191.63	74.722	1	7050100			85344	16753	59481	59573	94657;94658;94659;94660;94661;94662	94658					0.04015190037625871
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.295166015625	2	539.294965	1076.57538	-0.19689	-0.00010618	-0.018867	-1.0175E-05	-0.21576	-0.00011636	539.2948500881148	80.979	1.3932	80.742	80.206	81.599	-0.23784					78	33	5	0	0	0	0.0152	3	9715	9704;9715;9730		191.63	76.167	1	2034100			85345	16753	59481	59573	94663;94664;94665	94664					0.04015190037625871
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2950439453125	2	539.294965	1076.57538	-0.024597	-1.3265E-05	-0.2606	-0.00014054	-0.28519	-0.0001538	539.2947172709474	80.936	1.3625	80.73	80.343	81.705	-0.20632					61	32	4	0	0	0	0.013995	4	9724	9715;9724;9736;9751		191.63	85.211	1	2144700			85346	16753	59481	59573	94666;94667;94668;94669	94667					0.04015190037625871
VLLESEQFL	9	Unmodified	_VLLESEQFL_					0	0	0		ENST00000558527.5_1_15:40329525-40331317:-|nuORF;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENSG00000140319|ENST00000267884|SRP14	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENST00000558527.5_1_15:40329525-40331317:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2947998046875	2	539.294965	1076.57538	-1.0458	-0.000564	0.81278	0.00043833	-0.23303	-0.00012567	539.2952636332562	80.899	1.7433	80.753	80.035	81.779	-0.146					84	41	5	0	0	0	0.0152	3	9698	9687;9698;9711		191.63	85.211	1	1964700			85347	16753	59481	59573	94670;94671;94672	94671					0.04015190037625871
VLLFDDALV	9	Unmodified	_VLLFDDALV_					0	0	0		ENST00000450172.5_2_3:46722734-46730936:-|nuORF;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000431015.5_2_3:46722577-46730936:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL	ENST00000450172.5_2_3:46722734-46730936:-|nuORF	ENST00000450172.5_2_3:46722734-46730936:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.78668212890625	2	502.786776	1003.559	0.96523	0.0004853	-0.70743	-0.00035568	0.2578	0.00012962	502.7862797747855	87.49	0.89393	87.511	87.137	88.031	0.021263					32	21	2	0	0	0	0.31247	1	10934	10934		73.975	2.679	1	1671500			85348	8787	59482	59574	94673	94673					0.0573610887150835
VLLFEADTITL	11	Unmodified	_VLLFEADTITL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	618.352294921875	2	617.850104	1233.68566	-0.16914	-0.00010451	-0.72093	-0.00044543	-0.89008	-0.00054993	617.8500234323988	98.738	1.7562	98.735	97.811	99.567	-0.0038834					72	40	4	0	0	0	0.32544	1	12558	12558		87.696	30.975	1	344100			85349	18787	59483	59575	94674	94674					0.07815990305994092
VLLFEADTITL	11	Unmodified	_VLLFEADTITL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	617.850104	1233.68566	-0.30979	-0.0001914	-0.32096	-0.0001983	-0.63075	-0.00038971	617.8500999872052	98.69	1.3047	98.69	98.317	99.621	0	0.12386	0.00031436	NaN	87.696	65	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357290			85350	18787	59483	59575							0.07815990305994092
VLLFEADTITL	11	Unmodified	_VLLFEADTITL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	617.850104	1233.68566	0.34325	0.00021208	-1.0376	-0.0006411	-0.69439	-0.00042903	617.8496960836566	98.627	1.5922	98.637	97.897	99.49	0.010231	0.071428	-0.00057124	NaN	87.696	69	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351660			85351	18787	59483	59575							0.07815990305994092
VLLFEADTITL	11	Unmodified	_VLLFEADTITL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	617.850104	1233.68566	0.30236	0.00018681	-0.2521	-0.00015576	0.050253	3.1049E-05	617.8499331833038	98.61	0.70882	98.473	98.147	98.855	-0.13625	-0.092587	0.00039944	NaN	87.696	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165560			85352	18787	59483	59575							0.07815990305994092
VLLFEADTITL	11	Unmodified	_VLLFEADTITL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	617.850104	1233.68566	0.4375	0.00027031	-0.50805	-0.0003139	-0.070549	-4.3589E-05	617.8497321146749	98.521	0.75874	98.397	98.111	98.87	-0.12413	-0.16887	8.3173E-05	NaN	87.696	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167050			85353	18787	59483	59575							0.07815990305994092
VLLFEADTITL	11	Unmodified	_VLLFEADTITL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	617.850104	1233.68566	-0.11376	-7.0287E-05	-0.63692	-0.00039352	-0.75068	-0.00046381	617.8499067391695	98.629	1.1722	98.464	98.075	99.247	-0.1652	-0.10244	-7.6075E-05	NaN	87.696	46	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194420			85354	18787	59483	59575							0.07815990305994092
VLLFGIKNF	9	Unmodified	_VLLFGIKNF_					0	0	0		ENST00000225388.8_1_17:27588513-27588570:-|nuORF	ENST00000225388.8_1_17:27588513-27588570:-|nuORF	ENST00000225388.8_1_17:27588513-27588570:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.23828125	2	525.820953	1049.62735	-1.0602	-0.00055749	-4.1227	-0.0021678	-5.1829	-0.0027253	525.8190893357096	44.187	0.25057	43.943	43.829	44.08	-0.2444					9	6	2	0	0	0	0.024466	1	4114	4114		25.45	4.9683	1	88107			85355	11204	59484	59576	94675	94675					0.10452398242023264
VLLFPVTIN	9	Unmodified	_VLLFPVTIN_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7845153808594	2	508.312961	1014.61137	0.22421	0.00011397	3.0878	0.0015695	3.312	0.0016835	508.3143583073638	72.192	0.24368	71.93	71.72	71.964	-0.26199					8	5	2	0	0	0	0.024412	1	8456	8456		40.573	0	1	112470	+		85356	25129	59485	59577	94676	94676					0.10464692005143661
VLLFQVLEA	9	Unmodified	_VLLFQVLEA_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.758056640625	2	516.310418	1030.60628	-0.096868	-5.0014E-05	0.18249	9.422E-05	0.085619	4.4206E-05	516.3103093877751	73.566	0.47619	73.376	73.085	73.561	-0.19026					20	11	2	0	0	0	0.024381	1	8673	8673		37.159	5.2042	1	224180	+		85357	27109	59486	59578	94677	94677					0.09220388142512093
VLLGATHGLI	10	Unmodified	_VLLGATHGLI_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.7557678222656	2	497.30821	992.601866	0.24831	0.00012348	-0.6799	-0.00033812	-0.4316	-0.00021464	497.3077360800207	67.375	0.44112	67.375	67.165	67.606	0					16	10	2	0	0	0	0.03519	1	8064	8064		55.504	11.878	1	139510			85358	5495	59487	59579	94678	94678					0.10526923719623937
VLLGATHGLI	10	Unmodified	_VLLGATHGLI_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	497.30821	992.601866	-0.04959	-2.4662E-05	-0.54812	-0.00027259	-0.59771	-0.00029725	497.30787072363853	67.715	0.48378	67.426	67.187	67.671	-0.28834	-0.0045887	0.00013407	NaN	55.504	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145340			85359	5495	59487	59579							0.10526923719623937
VLLGATHGLI	10	Unmodified	_VLLGATHGLI_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF;nc|ENSG00000141458|O15118-2|NPC1	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.30821	992.601866	0.26931	0.00013393	-0.86659	-0.00043096	-0.59728	-0.00029703	497.3075877137563	67.468	0.4785	67.492	67.27	67.748	0.023911	0.060686	-0.00018268	NaN	55.504	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133170			85360	5495	59487	59579							0.10526923719623937
VLLGHIFYV	9	Unmodified	_VLLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.8135375976562	2	530.813128	1059.6117	-0.6895	-0.000366	0.56867	0.00030185	-0.12084	-6.4143E-05	530.8133099069676	77.823	1.8129	77.823	77.551	79.364	0					109	43	4	0	0	0	0.32257	1	9630	9630		72.62	15.899	1	1504100			85361	4373	59488	59580	94679	94679					0.0842811172499296
VLLGHIFYV	9	Unmodified	_VLLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8130493164062	2	530.813128	1059.6117	-0.24966	-0.00013252	0.12782	6.7848E-05	-0.12184	-6.4674E-05	530.8130961945517	77.862	1.5762	77.6	77.356	78.932	-0.26202					92	36	4	0	0	0	0.084323	3	9267	9257;9267;9291		116.12	33.817	1	3237300			85362	4373	59488	59580	94680;94681;94682	94681					0.0842811172499296
VLLGHIFYV	9	Unmodified	_VLLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.8134155273438	2	530.813128	1059.6117	0.25669	0.00013625	-0.26705	-0.00014176	-0.010366	-5.5025E-06	530.8128579958319	77.838	1.8187	77.596	77.276	79.095	-0.24233					96	42	4	0	0	0	0.22343	3	9282	9271;9282;9293		85.909	14.613	1	3355600			85363	4373	59488	59580	94683;94684;94685	94684					0.0842811172499296
VLLGHIFYV	9	Unmodified	_VLLGHIFYV_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000587709.5_1_19:19459550-19466588:+|nuORF	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8134155273438	2	530.813128	1059.6117	-0.24007	-0.00012743	0.036954	1.9616E-05	-0.20312	-0.00010782	530.812994257019	77.747	1.6232	77.585	77.268	78.891	-0.16196					88	37	4	0	0	0	0.084323	3	9247	9237;9247;9259		116.12	33.817	1	3160800			85364	4373	59488	59580	94686;94687;94688	94687					0.0842811172499296
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.3233947753906	2	495.323328	988.632104	1.2745	0.00063129	-1.8073	-0.00089522	-0.53284	-0.00026393	495.32249124022263	64.117	2.3725	64.117	63.772	66.145	0					180	64	5	0	0	0	0.17455	7	7517	7506;7517;7529;7541;7553;7565;7598		94.006	33.034	1	54354000			85365	3385	59489	59581	94689;94690;94691;94692;94693;94694;94695	94690					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.3232116699219	2	495.323328	988.632104	-0.46162	-0.00022865	-0.20503	-0.00010155	-0.66665	-0.0003302	495.32330385371785	64.399	2.4406	64.136	63.791	66.231	-0.2626					172	65	5	0	0	0	0.17455	9	7530	7521;7530;7541;7553;7565;7577;7591;7604;7616		94.006	22.629	1	53359000			85366	3385	59489	59581	94696;94697;94698;94699;94700;94701;94702;94703;94704	94697					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.3231201171875	2	495.323328	988.632104	1.0017	0.00049616	-1.7934	-0.00088831	-0.7917	-0.00039215	495.32250512256286	64.126	2.3443	64.171	63.83	66.174	0.045502					193	63	5	0	0	0	0.11848	7	7451	7429;7440;7451;7463;7475;7487;7502		106.42	43.109	1	55275000			85367	3385	59489	59581	94705;94706;94707;94708;94709;94710;94711	94707					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.3233642578125	2	495.323328	988.632104	-0.56323	-0.00027898	0.15739	7.7961E-05	-0.40584	-0.00020102	495.32338153858757	64.351	1.689	64.123	63.825	65.513	-0.22775					109	41	5	0	0	0	0.11848	5	7316	7283;7292;7304;7316;7328		106.42	45.443	1	12776000			85368	3385	59489	59581	94712;94713;94714;94715;94716	94715					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.3231506347656	2	495.323328	988.632104	-0.020807	-1.0306E-05	-0.37759	-0.00018703	-0.39839	-0.00019733	495.32310428487835	64.327	2.524	64.134	63.84	66.364	-0.19243					136	62	4	0	0	0	0.074956	4	7312	7292;7301;7312;7324		119.56	58.585	1	13165000			85369	3385	59489	59581	94717;94718;94719;94720	94719					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.32318115234375	2	495.323328	988.632104	-0.48747	-0.00024145	0.11924	5.9062E-05	-0.36823	-0.00018239	495.32332824979056	64.426	2.0064	64.171	63.755	65.761	-0.25562					118	49	4	0	0	0	0.11848	4	7293	7283;7293;7305;7318		106.42	43.109	1	14079000			85370	3385	59489	59581	94721;94722;94723;94724	94722					0.13733282384794165
VLLGRLAM	8	Unmodified	_VLLGRLAM_					0	0	0			REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	REV__ENST00000257572.5_1_12:117298148-117298622:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	436.7748107910156	2	436.772948	871.531344	0.28535	0.00012463	3.8657	0.0016885	4.1511	0.0018131	436.7745739222148	90.041	2.3328	90.025	89.541	91.873	-0.016708					171	55	5	0	0	0	1.0133	1	11398	11398		35.201	5.3592	1	37030000	+		85371	29564	59490	59582	94725	94725					0.0904392713028983
VLLHADKIL	9	Unmodified	_VLLHADKIL_					0	0	0			REV__ENSG00000138095|ENST00000260665|LRPPRC	REV__ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2657470703125	2	511.32386	1020.63317	-1.1032	-0.00056409	1.5004	0.00076717	0.39717	0.00020308	511.3244594297847	80.653	1.6194	80.677	80.361	81.98	0.023911					60	39	3	0	0	0	0.023596	1	10062	10062		85.359	19.556	1	334100	+		85372	23819	59491	59583	94726	94726					0.12367496753699925
VLLHIDAES	9	Unmodified	_VLLHIDAES_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.7711486816406	2	498.771657	995.528761	0.041478	2.0688E-05	-1.1705	-0.00058379	-1.129	-0.0005631	498.77099238659383	105.33	1.7748	105.2	104.54	106.32	-0.12444					139	57	4	0	0	0	0.96855	1	13092	13092		26.796	1.222	1	3882100	+		85373	21931	59492	59584	94727	94727					0.030817502063200664
VLLHSAVEE	9	Unmodified	_VLLHSAVEE_					0	0	0		nc|ENSG00000162576|Q9BRK3-4|MXRA8	nc|ENSG00000162576|Q9BRK3-4|MXRA8	nc|ENSG00000162576|Q9BRK3-4|MXRA8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.7712097167969	2	498.771657	995.528761	0.20366	0.00010158	-1.3994	-0.00069797	-1.1957	-0.00059639	498.770832586192	105.37	1.3357	105.2	104.87	106.2	-0.16484					137	51	4	0	0	0	0.88411	1	13147	13147		33.516	5.6333	1	3775500			85374	18435	59493	59585	94728	94728					0.03081750206331435
VLLIEGSYP	9	Unmodified	_VLLIEGSYP_					0	0	0		ENST00000542362.1_1_12:133218156-133218763:-|nuORF	ENST00000542362.1_1_12:133218156-133218763:-|nuORF	ENST00000542362.1_1_12:133218156-133218763:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7625732421875	2	495.778951	989.543348	0.77438	0.00038392	-3.8795	-0.0019234	-3.1051	-0.0015395	495.77780023515834	64.329	0.1472	64.329	64.275	64.422	0					5	3	2	0	0	0	0.024	1	7585	7585		55.504	0	1	91082			85375	16451	59494	59586	94729	94729					0.04815822354487409
VLLIILSHI	9	Unmodified	_VLLIILSHI_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.8449401855469	2	510.844428	1019.6743	-0.62786	-0.00032074	-0.33286	-0.00017004	-0.96071	-0.00049078	510.8442846520898	76.082	4.224	76.082	75.307	79.53	0					236	104	5	0	0	0	0.4855	1	9479	9479		60.294	10.269	1	51425000			85376	10425	59495	59587	94730	94730					0.1652525779318239
VLLIILSHI	9	Unmodified	_VLLIILSHI_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.8443298339844	2	510.844428	1019.6743	0.059948	3.0624E-05	-1.0024	-0.00051207	-0.94246	-0.00048145	510.8439425160303	76.098	5.1728	76.109	75.471	80.644	0.011642					256	126	5	0	0	0	0.24299	1	9293	9293		83.287	3.348	1	54455000			85377	10425	59495	59587	94731	94731					0.1652525779318239
VLLILAIA	8	Unmodified	_VLLILAIA_					0	0	0			REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.268798828125	2	413.29404	824.573526	-0.036435	-1.5058E-05	-2.7214	-0.0011247	-2.7578	-0.0011398	413.29288931663183	28.178	0.2032	28.259	28.167	28.37	0.080811					7	4	2	0	0	0	0.027866	1	1582	1582		24.504	0	1	34678	+		85378	19976	59496	59588	94732	94732					0.1542222581031183
VLLIQPQE	8	Unmodified	_VLLIQPQE_					0	0	0			REV__ENST00000525367.1_1_11:11901789-11906208:+|nuORF	REV__ENST00000525367.1_1_11:11901789-11906208:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.2799987792969	2	470.279118	938.543683	-0.076771	-3.6104E-05	0.82128	0.00038623	0.74451	0.00035013	470.2793582758717	75.724	1.1156	75.48	75.229	76.344	-0.24455					66	29	3	0	0	0	0.43637	1	9265	9265		92.191	3.5478	1	2871400	+		85379	34413	59497	59589	94733	94733					0.0719524207432869
VLLIRVTL	8	Unmodified	_VLLIRVTL_					0	0	0		ENST00000578327.1_3_18:5293292-5294813:-|nuORF	ENST00000578327.1_3_18:5293292-5294813:-|nuORF	ENST00000578327.1_3_18:5293292-5294813:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2506408691406	2	463.823495	925.632438	-0.58035	-0.00026918	0.50971	0.00023642	-0.070637	-3.2763E-05	463.8239402289751	48.156	0.59914	48.003	47.764	48.363	-0.15301					34	17	3	0	0	0	0.027866	1	4892	4892		14.664	0	1	789960			85380	17129	59498	59590	94734	94734					0.16664702104651496
VLLKCEVI	8	Unmodified	_VLLKCEVI_					0	0	0		ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	ENSG00000187323|ENST00000442544|DCC	MSMS	OPSCC_40_ClassI_Rep-3	6	458.7785339355469	2	458.780439	915.546325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.099	1	70.884	70.384	71.384	-0.21425								0	0	0	0.38842	1	8287	8287		68.485	2.6815	1				85381	9622	59499	59591	94735	94735					0.08517374207622197
VLLKEIHIQ	9	Unmodified	_VLLKEIHIQ_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6;ENST00000497023.1_1_2:32727936-32730277:+|nuORF	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.840576171875	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	0.72875	1	12745	12745		44.117	0	1	10488000			85382	186	59500	59592	94736	94736					0.12811168299458586
VLLKKEKI	8	Unmodified	_VLLKKEKI_					0	0	0			REV__nc|ENSG00000197694|Q13813|SPTAN1	REV__nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.8366394042969	2	485.836603	969.658653	-0.12199	-5.9267E-05	0.06596	3.2046E-05	-0.05603	-2.7221E-05	485.8365079384279	33.763	0.94017	33.538	33.239	34.179	-0.22466					65	23	4	0	0	0	0.97924	2	2441	2429;2441		40.573	0	1	5251400	+		85383	28337	59501	59593	94737;94738	94738					0.17260971276130022
VLLKKEKI	8	Unmodified	_VLLKKEKI_					0	0	0			REV__nc|ENSG00000197694|Q13813|SPTAN1	REV__nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.83660888671875	2	485.836603	969.658653	-0.33934	-0.00016487	0.20807	0.00010109	-0.13127	-6.3777E-05	485.83661434416143	33.74	1.1642	33.54	33.209	34.373	-0.20019					79	29	4	0	0	0	1.0133	1	2428	2428		35.201	0	1	5154200	+		85384	28337	59501	59593	94739	94739					0.17260971276130022
VLLKKEKI	8	Unmodified	_VLLKKEKI_					0	0	0			REV__nc|ENSG00000197694|Q13813|SPTAN1	REV__nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.83636474609375	2	485.836603	969.658653	-1.0033	-0.00048742	0.8919	0.00043332	-0.11137	-5.4106E-05	485.8369188835123	33.741	1.1476	33.566	33.226	34.374	-0.17557					70	28	4	0	0	0	1.0133	1	2430	2430		35.201	0	1	4470500	+		85385	28337	59501	59593	94740	94740					0.17260971276130022
VLLKKSGG	8	Unmodified	_VLLKKSGG_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	401.2616271972656	2	401.263271	800.511988	0.25207	0.00010115	-3.7878	-0.0015199	-3.5358	-0.0014188	401.2616516837039	85.433	1.2566	85.375	84.98	86.237	-0.057617					73	29	4	0	0	0	1.0574	1	10665	10665		19.36	0	1	3809400	+		85386	21245	59502	59594	94741	94741					0.10375294111054245
VLLKTCPVY	9	Unmodified	_VLLKTCPVY_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.263916015625	2	518.298996	1034.58344	-1.4212	-0.00073662	4.1483	0.00215	2.727	0.0014134	518.3009258737764	29.78	0.73589	29.858	29.646	30.382	0.078344					46	17	4	0	0	0	0.024381	1	1820	1820		37.159	0	1	722260	+		85387	22745	59503	59595	94742	94742					0.06753045753384868
VLLLASSY	8	Unmodified	_VLLLASSY_					0	0	0		ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2571716308594	2	433.255111	864.49567	0.082102	3.5571E-05	-1.5381	-0.00066638	-1.456	-0.00063081	433.25533421616046	102.79	2.2075	102.8	102.41	104.62	0.0054245					176	55	6	0	0	0	0.94001	1	13233	13233		46.766	0	1	219000000			85388	6593	59504	59596	94743	94743					0.05800168154280527
VLLLDVIPL	9	Unmodified	_VLLLDVIPL_					0	0	0		ENST00000432228.1_1_2:222827655-222828180:+|nuORF	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.83197021484375	2	497.830986	993.647419	0.63692	0.00031708	-0.17385	-8.6546E-05	0.46307	0.00023053	497.83050855377445	105.3	1.056	105.3	104.95	106.01	0					70	32	3	0	0	0	0.64155	1	13500	13500		50.025	0	1	1020000			85389	14200	59505	59597	94744	94744					0.15034149182008605
VLLLDVIPL	9	Unmodified	_VLLLDVIPL_					0	0	0		ENST00000432228.1_1_2:222827655-222828180:+|nuORF	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.771240234375	2	497.830986	993.647419	0.019037	9.4772E-06	0.087275	4.3448E-05	0.10631	5.2926E-05	497.8307746655362	105.22	0.9332	105.22	104.93	105.86	0.00096893					62	31	3	0	0	0	0.024487	1	13454	13454		17.365	0	1	977390			85390	14200	59505	59597	94745	94745					0.15034149182008605
VLLLEQPQ	8	Unmodified	_VLLLEQPQ_					0	0	0			REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2802734375	2	470.279118	938.543683	0.86215	0.00040545	-0.066088	-3.108E-05	0.79607	0.00037437	470.278938519176	75.58	1.5245	75.59	75.25	76.774	0.010376					85	39	4	0	0	0	0.34196	1	9195	9195		105.27	4.0572	1	3647200	+		85391	21106	59506	59598	94746	94746					0.07195242074340058
VLLLGHSADLR	11	Unmodified	_VLLLGHSADLR_					0	0	0		ENSG00000170801|ENST00000307358|HTRA3;nc|ENSG00000170801|P83110-2|HTRA3	ENSG00000170801|ENST00000307358|HTRA3	ENSG00000170801|ENST00000307358|HTRA3	MSMS	OPSCC_39_ClassI_Rep-1	1	597.3543701171875	2	597.35368	1192.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.86	1	103.86	103.36	104.36	0								0	0	0	1.3265	1	13325	13325		24.519	0.31644	1				85392	8080	59507	59599	94747	94747					0.10416767697074647
VLLLGHSADLR	11	Unmodified	_VLLLGHSADLR_					0	0	0		ENSG00000170801|ENST00000307358|HTRA3;nc|ENSG00000170801|P83110-2|HTRA3	ENSG00000170801|ENST00000307358|HTRA3	ENSG00000170801|ENST00000307358|HTRA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.353759765625	2	597.35368	1192.69281	0.058256	3.48E-05	0.064133	3.831E-05	0.12239	7.311E-05	597.3533732191595	103.93	0.82243	103.77	103.44	104.26	-0.16791					29	21	2	0	0	0	1.0392	1	12908	12908		28.081	3.5623	1	689690			85393	8080	59507	59599	94748	94748					0.10416767697074647
VLLLGILLT	9	Unmodified	_VLLLGILLT_					0	0	0			REV__nc|ENSG00000151490|Q16827-2|PTPRO	REV__nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.833251953125	2	477.833529	953.652505	0.39262	0.00018761	0.073048	3.4905E-05	0.46566	0.00022251	477.8334281447745	105.79	1.1708	105.79	105.37	106.54	-0.0013199					118	39	4	0	0	0	1.0101	1	13581	13581		18.324	0	1	1956600	+		85394	24775	59508	59600	94749	94749					0.17382453044604063
VLLLGVVGLL	10	Unmodified	_VLLLGVVGLL_					0	0	0			REV__nc|ENSG00000159884|Q8WV48-5|CCDC107	REV__nc|ENSG00000159884|Q8WV48-5|CCDC107	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.760498046875	2	498.346803	994.679054	-0.69919	-0.00034844	0.022974	1.1449E-05	-0.67621	-0.00033699	498.34674565691824	75.59	0.53851	75.59	75.343	75.881	0					27	14	2	0	0	0	0.03519	1	9260	9260		44.531	0	1	291360	+		85395	25279	59509	59601	94750	94750					0.18150141935961983
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3027648925781	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.192	1	69.942	69.442	70.442	-0.25063								0	0	0	1.7024	1	8171	8171		6.001	2.5923	1		+		85396	25794	59510	59602	94751	94751					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-2	5	427.30279541015625	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.267	1	70.017	69.517	70.517	-0.25063								0	0	0	1.7024	1	8182	8182		6.001	2.5923	1		+		85397	25794	59510	59602	94752	94752					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3027648925781	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.342	1	70.085	69.585	70.585	-0.25713								0	0	0	1.7576	1	8193	8193		3.4087	0	1		+		85398	25794	59510	59602	94753	94753					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3027038574219	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.421	1	70.164	69.664	70.664	-0.25713								0	0	0	1.7024	1	8205	8205		6.001	2.5923	1		+		85399	25794	59510	59602	94754	94754					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3020324707031	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.504	1	70.247	69.747	70.747	-0.25713								0	0	0	1.7024	1	8218	8218		6.001	0	1		+		85400	25794	59510	59602	94755	94755					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3020324707031	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.582	1	70.324	69.824	70.824	-0.25713								0	0	0	1.7024	1	8229	8229		6.001	2.7897	1		+		85401	25794	59510	59602	94756	94756					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-2	5	427.3029479980469	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.923	1	70.666	70.166	71.166	-0.25713								0	0	0	1.7024	1	8277	8277		6.001	2.5923	1		+		85402	25794	59510	59602	94757	94757					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-3	6	427.3027038574219	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.029	1	69.807	69.307	70.307	-0.22245								0	0	0	1.7024	1	8136	8136		6.001	2.7897	1		+		85403	25794	59510	59602	94758	94758					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-3	6	427.30267333984375	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.104	1	69.885	69.385	70.385	-0.21958								0	0	0	1.7024	1	8147	8147		6.001	0	1		+		85404	25794	59510	59602	94759	94759					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-3	6	427.30267333984375	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.185	1	69.971	69.471	70.471	-0.21425								0	0	0	1.6956	1	8159	8159		6.3209	2.9122	1		+		85405	25794	59510	59602	94760	94760					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-3	6	427.3028259277344	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.337	1	70.123	69.623	70.623	-0.21425								0	0	0	1.7576	1	8182	8182		3.4087	0	1		+		85406	25794	59510	59602	94761	94761					0.25807349203978447
VLLLKRVRLLG	11	Unmodified	_VLLLKRVRLLG_					0	0	0			REV__ENSG00000164707|ENST00000682651|SLC13A4	REV__ENSG00000164707|ENST00000682651|SLC13A4	MSMS	OPSCC_40_ClassI_Rep-3	6	427.3027038574219	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.414	1	70.2	69.7	70.7	-0.21425								0	0	0	1.7024	1	8194	8194		6.001	2.7897	1		+		85407	25794	59510	59602	94762	94762					0.25807349203978447
VLLLKSFQN	9	Unmodified	_VLLLKSFQN_					0	0	0		nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2503662109375	2	531.321317	1060.62808	-0.50783	-0.00026982	0.45608	0.00024233	-0.051747	-2.7494E-05	531.3213241126521	77.087	0.40758	76.925	76.616	77.024	-0.16196					15	9	2	0	0	0	0.024484	1	9112	9112		37.812	7.3079	1	414280			85408	1021	59511	59603	94763	94763					0.10019192891104467
VLLLLCFLF	9	Unmodified	_VLLLLCFLF_					0	0	0			REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.83154296875	2	540.829932	1079.64531	-1.5879	-0.00085881	4.1646	0.0022523	2.5766	0.0013935	540.8322474413316	75.313	1.8855	75.313	74.914	76.799	0					179	48	6	0	0	0	0.80342	1	9269	9269		39.021	0.21535	1	90806000	+		85409	26163	59512	59604	94764	94764					0.10867397172523852
VLLLMTKSN	9	Unmodified	_VLLLMTKSN_					0	0	0			REV__GLT6D1|p.R5T|1|0.3|ENSG00000204007|chr9:135639174-135639174|C/G|missense_variant	REV__GLT6D1|p.R5T|1|0.3|ENSG00000204007|chr9:135639174-135639174|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8028564453125	2	509.801903	1017.58925	0.60396	0.0003079	2.6714	0.0013619	3.2753	0.0016698	509.80316832379725	83.279	2.7899	83.067	81.496	84.286	-0.21159					160	64	4	0	0	0	0.75397	1	10001	10001		42.396	10.441	1	1089300	+		85410	36075	59513	59605	94765	94765					0.08116144265068215
VLLLNVAI	8	Unmodified	_VLLLNVAI_					0	0	0			REV__ENSG00000130035|ENST00000252318|GALNT8	REV__ENSG00000130035|ENST00000252318|GALNT8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7585144042969	2	427.789121	853.56369	0.35695	0.0001527	-1.447	-0.00061903	-1.0901	-0.00046633	427.78641990599425	41.299	0.17506	41.322	41.219	41.394	0.023006					7	4	2	0	0	0	0.027866	1	3647	3647		8.8223	0	1	61781	+		85411	23075	59514	59606	94766	94766					0.13105037804950825
VLLLQPKIP	9	Unmodified	_VLLLQPKIP_					0	0	0		ENSG00000174606|ENST00000366962|ANGEL2;nc|ENSG00000174606|Q5VTE6-2|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.844482421875	2	510.844428	1019.6743	0.059948	3.0624E-05	-1.0024	-0.00051207	-0.94246	-0.00048145	510.8439425160303	76.098	5.1728	76.109	75.471	80.644	0.011642					256	126	5	0	0	0	0.15889	2	9372	9372;9396		97.473	3.4663	1	54455000			85412	8484	59515	59607	94767;94768	94767					0.16525257793159653
VLLLQRSVS	9	Unmodified	_VLLLQRSVS_					0	0	0		ENST00000489980.5_1_2:85924472-85925694:+|nuORF	ENST00000489980.5_1_2:85924472-85925694:+|nuORF	ENST00000489980.5_1_2:85924472-85925694:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7358093261719	2	507.818941	1013.62333	-0.48715	-0.00024738	0.26583	0.000135	-0.22131	-0.00011239	507.81904560499964	39.764	0.51143	39.541	39.263	39.775	-0.22311					18	12	2	0	0	0	0.024262	1	3400	3400		38.806	0	1	107950			85413	15425	59516	59608	94769	94769					0.1170630874833023
VLLLTLLLPG	10	Unmodified	_VLLLTLLLPG_					0	0	0			REV__ENSG00000121281|ENST00000673801|ADCY7	REV__ENSG00000121281|ENST00000673801|ADCY7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.3118896484375	2	526.359911	1050.70527	-0.82743	-0.00043553	2.9893	0.0015735	2.1619	0.0011379	526.3612681208856	36.402	1.5368	36.402	36.096	37.632	0					112	41	4	0	0	0	0.03519	1	2984	2984		17.365	0	1	878950	+		85414	22588	59517	59609	94770	94770					0.1819441110740172
VLLNGFVALL	10	Unmodified	_VLLNGFVALL_					0	0	0			REV__ENSG00000146385|ENST00000275200|TAAR8	REV__ENSG00000146385|ENST00000275200|TAAR8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2505493164062	2	529.83406	1057.65357	-1.7106	-0.00090634	-2.9039	-0.0015386	-4.6145	-0.0024449	529.8325899123897	51.736	0.37808	51.467	51.242	51.62	-0.26903					13	9	2	0	0	0	0.03519	1	5316	5316		24.203	5.0992	1	136460	+		85415	24484	59518	59610	94771	94771					0.12704667413527204
VLLNNGVGLL	10	Unmodified	_VLLNNGVGLL_					0	0	0			REV__ENSG00000054277|ENST00000366554|OPN3	REV__ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3131103515625	2	506.313492	1010.61243	-0.54367	-0.00027527	-1.5296	-0.00077445	-2.0733	-0.0010497	506.31352244677424	64.414	1.1433	64.151	63.578	64.722	-0.2626					79	30	4	0	0	0	0.75995	1	7538	7538		63.306	2.3343	1	3363100	+		85416	20187	59519	59611	94772	94772					0.10754906374052098
VLLPFHRCS	9	Unmodified	_VLLPFHRCS_					0	0	0			REV__nc|ENSG00000164078|Q04912-2|MST1R	REV__nc|ENSG00000164078|Q04912-2|MST1R	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.34228515625	2	536.292037	1070.56952	-1.6066	-0.00086161	-4.2278	-0.0022673	-5.8344	-0.003129	536.2891349147935	26.963	0.28864	27.044	26.883	27.171	0.081291					10	7	2	0	0	0	0.024477	1	1358	1358		20.947	0	1	57746	+		85417	25687	59520	59612	94773	94773					0.037058130449622695
VLLPHNGG	8	Unmodified	_VLLPHNGG_					0	0	0			REV__ENSG00000198626|ENST00000366574|RYR2	REV__ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	404.58941650390625	2	403.729595	805.444637	1.3674	0.00055207	-0.54317	-0.00021929	0.82425	0.00033277	403.72919370303117	40.239	0.64956	40.262	40.013	40.663	0.023006					31	17	3	0	0	0	0.027866	1	3482	3482		4.3163	0	1	988300	+		85418	28441	59521	59613	94774	94774					0.03413263900097263
VLLPPVEQP	9	Unmodified	_VLLPPVEQP_					0	0	0		ENSG00000107185|ENST00000378078|RGP1;ENST00000496906.1_1_9:35750742-35753913:+|nuORF	ENSG00000107185|ENST00000378078|RGP1	ENSG00000107185|ENST00000378078|RGP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2660827636719	2	496.294768	990.574983	0.61188	0.00030367	-0.16148	-8.0141E-05	0.4504	0.00022353	496.29450830219423	87.511	0.85011	87.511	87.278	88.128	0					47	20	3	0	0	0	0.024386	1	10978	10978		33.516	7.9415	1	665960			85419	2830	59522	59614	94775	94775					0.07931815108429419
VLLPTENI	8	Unmodified	_VLLPTENI_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6|ANKMY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	449.7792053222656	2	449.765843	897.517133	0.2497	0.00011231	0.22832	0.00010269	0.47802	0.000215	449.76576686068046	68.197	0.61227	68.197	67.87	68.482	0					23	15	2	0	0	0	0.027866	1	8130	8130		38.806	0	1	191160	+		85420	24340	59523	59615	94776	94776					0.06427553183004875
VLLQELQP	8	Unmodified	_VLLQELQP_					0	0	0		ENST00000597186.5_1_19:58640094-58640166:-|nuORF	ENST00000597186.5_1_19:58640094-58640166:-|nuORF	ENST00000597186.5_1_19:58640094-58640166:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	470.280029296875	2	470.279118	938.543683	-0.076771	-3.6104E-05	0.82128	0.00038623	0.74451	0.00035013	470.2793582758717	75.724	1.1156	75.48	75.229	76.344	-0.24455					66	29	3	0	0	0	0.33369	1	9277	9277		106.42	1.1464	1	2871400			85421	17443	59524	59616	94777	94777					0.07195242074340058
VLLQIQPV	8	Unmodified	_VLLQIQPV_					0	0	0		ENSG00000163884|ENST00000296233|KLF15	ENSG00000163884|ENST00000296233|KLF15	ENSG00000163884|ENST00000296233|KLF15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.7657775878906	2	455.292028	908.569503	0.85883	0.00039102	-1.4021	-0.00063836	-0.54326	-0.00024734	455.2913343283966	88.644	0.42688	88.617	88.389	88.816	-0.027664					16	9	2	0	0	0	0.027866	1	11167	11167		35.201	0	1	99822			85422	7165	59525	59617	94778	94778					0.1115613631660608
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8172607421875	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.87448	1	11062	11062		34.173	2.6427	1	3741200			85423	2037	59526	59618	94779	94779					0.09498308748311501
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167114257812	2	531.818941	1061.62333	0.17298	9.1995E-05	-4.1238	-0.0021931	-3.9509	-0.0021011	531.8166531068138	85.355	2.6332	85.16	83.7	86.333	-0.19508					190	61	4	0	0	0	0.72875	3	10306	10306;10318;10360		44.117	1.7207	1	1282000			85424	2037	59526	59618	94780;94781;94782	94780					0.09498308748311501
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167114257812	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.87448	1	10700	10700		34.173	0	1	5249700			85425	2037	59526	59618	94783	94783					0.09498308748311501
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8167114257812	2	531.818941	1061.62333	0.26844	0.00014276	-4.3102	-0.0022922	-4.0418	-0.0021495	531.8165379240309	85.325	2.5466	85.175	83.81	86.356	-0.14967					195	59	4	0	0	0	0.94809	2	10315	10315;10501		29.15	4.6304	1	1303400			85426	2037	59526	59618	94784;94785	94784					0.09498308748311501
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8163452148438	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.94809	1	10750	10750		29.15	0	1	4853400			85427	2037	59526	59618	94786	94786					0.09498308748311501
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.81640625	2	531.818941	1061.62333	0.2592	0.00013785	-4.2699	-0.0022708	-4.0107	-0.0021329	531.8165415557128	85.414	2.6836	85.276	83.672	86.356	-0.13752					166	62	4	0	0	0	0.85329	1	10300	10300		35.618	1.4457	1	1297700			85428	2037	59526	59618	94787	94787					0.09498308748311501
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant;ENSG00000095777|ENST00000642920|MYO3A	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MYO3A|p.M1192*|1|0.28|ENSG00000095777|chr10:26173831-26173831|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8179321289062	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.87448	1	10798	10798		34.173	0	1	4521600			85429	2037	59526	59618	94788	94788					0.09498308748311501
VLLQRRKRE	9	Unmodified	_VLLQRRKRE_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.C1338Vfs*17|1|0.35|ENSG00000005483|chr7:105110812-105110812|T/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-3|KMT2E;nc|ENSG00000005483|Q8IZD2-4|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.3798217773438	2	599.380563	1196.74657	-0.43786	-0.00026245	-0.51716	-0.00030997	-0.95502	-0.00057242	599.3801501968157	102.33	0.59103	102.21	102	102.59	-0.12666					41	13	5	0	0	0	0.98128	1	12746	12746		24.203	2.517	1	662760			85430	771	59527	59619	94789	94789					0.15606984919463684
VLLQTYRES	9	Unmodified	_VLLQTYRES_					0	0	0		ENSG00000127423|ENST00000374298|AUNIP;nc|ENSG00000127423|Q9H7T9-2|AUNIP	ENSG00000127423|ENST00000374298|AUNIP	ENSG00000127423|ENST00000374298|AUNIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	554.2821044921875	2	554.803488	1107.59242	0.14767	8.1927E-05	2.5331	0.0014054	2.6807	0.0014873	554.8046803535188	93.478	0.46856	93.478	93.261	93.73	0					27	10	3	0	0	0	0.024523	1	11880	11880		29.15	0	1	157040			85431	4244	59528	59620	94790	94790					0.0429311064342528
VLLQWHLL	8	Unmodified	_VLLQWHLL_					0	0	0			REV__nc|ENSG00000092931|O43934-2|MFSD11	REV__nc|ENSG00000092931|O43934-2|MFSD11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2641906738281	2	511.313295	1020.61204	-0.90026	-0.00046032	0.19193	9.8138E-05	-0.70833	-0.00036218	511.31312581361595	81.211	0.36087	81.081	80.897	81.258	-0.13075					12	8	2	0	0	0	0.027866	1	10096	10096		20.482	0	1	66226	+		85432	20942	59529	59621	94791	94791					0.10255531444840926
VLLRAQPPAL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VLLRAQPPAL_					1	0	0		ENST00000491277.1_1_1:214724828-214724885:-|nuORF	ENST00000491277.1_1_1:214724828-214724885:-|nuORF	ENST00000491277.1_1_1:214724828-214724885:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.349853515625	2	560.347866	1118.68118	-0.18989	-0.0001064	3.1646	0.0017733	2.9747	0.0016669	560.3495502471608	105.99	0.56302	105.99	105.7	106.27	-0.0013123					45	19	3	0	0	0	1.0142	1	13560	13560		44.117	6.3053	1	423880			85433	15456	59530	59622	94792	94792					0.1265857067376146
VLLRNAVQ	8	Unmodified	_VLLRNAVQ_					0	0	0		ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.26947021484375	2	456.784902	911.55525	-0.15479	-7.0706E-05	0.73998	0.00033801	0.58519	0.00026731	456.7851212962305	25.781	0.75744	25.781	25.486	26.243	0					23	17	2	0	0	0	0.027866	1	1221	1221		18.324	0	1	59846			85434	5621	59531	59623	94793	94793					0.09593483888318133
VLLRPDSSI	9	Unmodified	_VLLRPDSSI_					0	0	0		ENST00000419303.5_1_22:22348995-22398182:-|nuORF	ENST00000419303.5_1_22:22348995-22398182:-|nuORF	ENST00000419303.5_1_22:22348995-22398182:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.77789306640625	2	500.295299	998.576045	-0.061244	-3.064E-05	-0.83557	-0.00041803	-0.89681	-0.00044867	500.29497979073676	69.171	0.2917	69.171	69.016	69.308	0					12	7	2	0	0	0	0.024427	1	8312	8312		34.173	0	1	90001			85435	13952	59532	59624	94794	94794					0.07670029477333173
VLLRSCAATYE	11	Carbamidomethyl (C)	_VLLRSC(Carbamidomethyl (C))AATYE_	VLLRSC(1)AATYE		VLLRSC(41)AATYE		0	1	0			REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2193908691406	3	428.220184	1281.63872	0.19369	8.294E-05	-2.0852	-0.00089292	-1.8915	-0.00080998	428.21931550063135	27.637	1.4544	27.395	26.911	28.366	-0.24217					81	34	5	0	0	0	0.98082	1	1540	1540		41.08	8.3295	1	2506600	+		85436	25362	59533	59625	94795	94795	333				0.00916807483190496
VLLRSCAATYE	11	Carbamidomethyl (C)	_VLLRSC(Carbamidomethyl (C))AATYE_					0	1	0			REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	428.220184	1281.63872	-0.71769	-0.00030733	-0.6655	-0.00028498	-1.3832	-0.00059231	428.21994052448116	27.614	1.2441	27.614	27.286	28.53	0	0.17233	0.0010051	NaN	41.08	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684850	+		85437	25362	59533	59625			333				0.00916807483190496
VLLRSCAATYE	11	Carbamidomethyl (C)	_VLLRSC(Carbamidomethyl (C))AATYE_					0	1	0			REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	428.220184	1281.63872	-0.43456	-0.00018609	-0.83633	-0.00035814	-1.2709	-0.00054422	428.2197727139616	27.529	1.2959	27.516	27.277	28.573	-0.012983	0.073932	0.00078563	NaN	41.08	61	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	593410	+		85438	25362	59533	59625			333				0.00916807483190496
VLLRSCAATYE	11	Carbamidomethyl (C)	_VLLRSC(Carbamidomethyl (C))AATYE_					0	1	0			REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	REV__ENST00000526977.5_1_8:145650235-145651211:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	428.220184	1281.63872	-0.49265	-0.00021096	-0.93393	-0.00039993	-1.4266	-0.00061089	428.21979679373766	27.311	1.1632	27.392	27.208	28.371	0.081293	-0.050097	0.00066026	NaN	41.08	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479220	+		85439	25362	59533	59625			333				0.00916807483190496
VLLRTINRWG	10	Unmodified	_VLLRTINRWG_					0	0	0			REV__ITGB2|p.V255I|1|0.22|ENSG00000160255|chr21:44900454-44900454|C/T|missense_variant	REV__ITGB2|p.V255I|1|0.22|ENSG00000160255|chr21:44900454-44900454|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.91558837890625	3	409.915535	1226.72478	0.52808	0.00021647	-0.57313	-0.00023494	-0.045052	-1.8467E-05	409.9152633306445	32.131	1.0561	31.938	31.641	32.697	-0.19261					65	24	5	0	0	0	1.118	1	2185	2185		20.03	0.033703	1	927910	+		85440	36159	59534	59626	94796	94796					0.12048180170882006
VLLSAELGVHI	11	Unmodified	_VLLSAELGVHI_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.842529296875	2	575.845156	1149.67576	-0.081707	-4.705E-05	-3.8561	-0.0022205	-3.9378	-0.0022676	575.8428075160716	88.161	0.67118	88.03	87.647	88.318	-0.13135					43	16	3	0	0	0	1.0119	1	10765	10765		34.173	1.3601	1	551680	+		85441	20082	59535	59627	94797	94797					0.10690847091291289
VLLSALVHRA	10	Unmodified	_VLLSALVHRA_					0	0	0			REV__ZZEF1|p.A2628V|1|0.09|ENSG00000074755|chr17:4017489-4017489|G/A|missense_variant	REV__ZZEF1|p.A2628V|1|0.09|ENSG00000074755|chr17:4017489-4017489|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.764404296875	2	539.840208	1077.66586	-1.8408	-0.00099375	2.1357	0.0011529	0.29486	0.00015918	539.8413717015954	49.5	0.30224	49.574	49.391	49.693	0.074196					10	7	2	0	0	0	0.03519	1	5053	5053		25.574	9.9322	1	56270	+		85442	37831	59536	59628	94798	94798					0.13013703876572436
VLLSEILHL	9	Unmodified	_VLLSEILHL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.8230590820312	2	518.823692	1035.63283	-0.12271	-6.3664E-05	0.78369	0.00040659	0.66098	0.00034293	518.8240317886853	86.647	0.64069	86.46	86.254	86.895	-0.18696					27	14	3	0	0	0	0.040175	2	10510	10510;10523		133.47	41.278	1	462630			85443	1544	59537	59629	94799;94800	94799					0.11644077033861322
VLLSEILHL	9	Unmodified	_VLLSEILHL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.8232421875	2	518.823692	1035.63283	0.79998	0.00041505	-0.38549	-0.0002	0.41448	0.00021504	518.8234626879945	86.542	0.64922	86.399	86.147	86.796	-0.14218					34	14	3	0	0	0	0.021668	2	10523	10513;10523		148.21	33.62	1	568380			85444	1544	59537	59629	94801;94802	94802					0.11644077033861322
VLLSEILHL	9	Unmodified	_VLLSEILHL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.8230590820312	2	518.823692	1035.63283	0.25755	0.00013362	0.054037	2.8036E-05	0.31159	0.00016166	518.8236354189295	86.589	0.60744	86.451	86.18	86.787	-0.13734					30	13	3	0	0	0	0.021668	2	10503	10503;10516		148.21	33.62	1	573000			85445	1544	59537	59629	94803;94804	94803					0.11644077033861322
VLLSERGM	8	Unmodified	_VLLSERGM_					0	0	0		nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;nc|ENSG00000040341|Q9NUL3-4|STAU2;nc|ENSG00000040341|Q9NUL3-6|STAU2;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;ENSG00000040341|ENST00000524300|STAU2	nc|ENSG00000040341|Q9NUL3-3|STAU2	nc|ENSG00000040341|Q9NUL3-3|STAU2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.22900390625	2	452.74967	903.484787	-0.05336	-2.4159E-05	1.2713	0.00057558	1.2179	0.00055142	452.7499046533567	102.63	0.69164	102.63	102.39	103.08	0					20	16	2	0	0	0	0.027866	1	13185	13185		57.811	0	1	168520			85446	18043	59538	59630	94805	94805					0.029184425083599308
VLLSGLHADLL	11	Unmodified	_VLLSGLHADLL_					0	0	0		ENST00000285518.10_1_8:6615806-6616025:+|nuORF	ENST00000285518.10_1_8:6615806-6616025:+|nuORF	ENST00000285518.10_1_8:6615806-6616025:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8429565429688	2	575.845156	1149.67576	-0.081707	-4.705E-05	-3.8561	-0.0022205	-3.9378	-0.0022676	575.8428075160716	88.161	0.67118	88.03	87.647	88.318	-0.13135					43	16	3	0	0	0	1.0119	1	10753	10753		34.173	0.25091	1	551680			85447	11751	59539	59631	94806	94806					0.10690847091291289
VLLSGLLGG	9	Unmodified	_VLLSGLLGG_					0	0	0			REV__ENSG00000197241|ENST00000400906|SLC2A7	REV__ENSG00000197241|ENST00000400906|SLC2A7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.76202392578125	2	414.763104	827.511654	-0.33499	-0.00013894	-3.3986	-0.0014096	-3.7336	-0.0015486	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	0.78069	1	10817	10817		40.573	0	1	36536000	+		85448	28281	59540	59632	94807	94807					0.09099874391188223
VLLSGLLGG	9	Unmodified	_VLLSGLLGG_					0	0	0			REV__ENSG00000197241|ENST00000400906|SLC2A7	REV__ENSG00000197241|ENST00000400906|SLC2A7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	414.763104	827.511654	1.0345	0.00042909	-4.8261	-0.0020017	-3.7916	-0.0015726	414.76104676582395	87.72	2.4947	87.72	87.152	89.647	0	-0.053458	-0.00049115	NaN	40.573	199	59	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52577000	+		85449	28281	59540	59632							0.09099874391188223
VLLSGLLGG	9	Unmodified	_VLLSGLLGG_					0	0	0			REV__ENSG00000197241|ENST00000400906|SLC2A7	REV__ENSG00000197241|ENST00000400906|SLC2A7	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	414.763104	827.511654	0.89315	0.00037045	-4.6653	-0.001935	-3.7722	-0.0015646	414.761127402026	87.767	2.46	87.786	87.26	89.72	0.018555	0.012471	-0.00035775	NaN	40.573	174	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41862000	+		85450	28281	59540	59632							0.09099874391188223
VLLSKEEAE	9	Unmodified	_VLLSKEEAE_					0	0	0			REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	REV__ENST00000595108.5_1_19:6733949-6737021:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.27740478515625	2	509.276772	1016.53899	-0.53702	-0.00027349	1.0772	0.00054861	0.54022	0.00027512	509.2774489461317	35.354	1.7074	35.167	34.76	36.467	-0.18675					157	45	7	0	0	0	0.55828	1	2687	2687		55.504	2.1528	1	9291900	+		85451	35781	59541	59633	94808	94808					0.031383131409029374
VLLSLPLLL	9	Unmodified	_VLLSLPLLL_					0	0	0			REV__nc|ENSG00000117091|P09326-2|CD48	REV__nc|ENSG00000117091|P09326-2|CD48	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.25933837890625	2	490.841354	979.668155	-0.39465	-0.00019371	0.10515	5.1613E-05	-0.28949	-0.0001421	490.84123214915417	105.75	0.39359	105.62	105.44	105.83	-0.12444					25	12	3	0	0	0	0.024541	1	13187	13187		13.775	0.81615	1	115330	+		85452	22322	59542	59634	94809	94809					0.17750739561665796
VLLSRNGSEV	10	Unmodified	_VLLSRNGSEV_					0	0	0		nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4	nc|ENSG00000145113|Q99102-3|MUC4	nc|ENSG00000145113|Q99102-3|MUC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.2779541015625	2	537.301113	1072.58767	-1.142	-0.00061358	-0.35937	-0.00019309	-1.5013	-0.00080667	537.3003775438032	45.809	0.57974	45.657	45.276	45.856	-0.15157					21	16	2	0	0	0	0.03519	1	4450	4450		26.693	0	1	412920			85453	5792	59543	59635	94810	94810					0.054282265006804664
VLLSTIHEL	9	Unmodified	_VLLSTIHEL_					0	0	0		ENSG00000163634|ENST00000295899|THOC7	ENSG00000163634|ENST00000295899|THOC7	ENSG00000163634|ENST00000295899|THOC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.8048706054688	2	512.8055	1023.59645	-0.86198	-0.00044203	0.55321	0.00028369	-0.30877	-0.00015834	512.8056415995076	62.955	0.78929	62.716	62.451	63.24	-0.23926					32	19	3	0	0	0	0.22754	1	7322	7322		85.359	0.44396	1	2175500			85454	7121	59544	59636	94811	94811					0.08559200137142398
VLLTAVLLL	9	Unmodified	_VLLTAVLLL_					0	0	0		ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8332214355469	2	477.833529	953.652505	0.19865	9.4921E-05	0.15185	7.2557E-05	0.35049	0.00016748	477.833467546802	105.85	1.2379	105.85	105.54	106.78	0.00014496					116	43	4	0	0	0	1.0051	2	13525	13525;13538		19.36	0	1	2681800			85455	3449	59545	59637	94812;94813	94812					0.173824530446268
VLLTDAQIL	9	Unmodified	_VLLTDAQIL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.8266296386719	2	493.30005	984.585547	0.080747	3.9832E-05	3.9765	0.0019616	4.0572	0.0020014	493.3016499522218	105.95	0.42146	105.95	105.78	106.2	-0.0013199					20	14	2	0	0	0	0.024209	1	13552	13552		76.774	17.992	1	99876	+		85456	24273	59546	59638	94814	94814					0.09263797762855575
VLLTDAQIL	9	Unmodified	_VLLTDAQIL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.30005	984.585547	-0.91808	-0.00045289	4.0574	0.0020015	3.1393	0.0015486	493.3019065464985	106.09	0.34456	105.96	105.77	106.12	-0.13279	0.0052929	4.0226E-05	NaN	76.774	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116890	+		85457	24273	59546	59638							0.09263797762855575
VLLTFGSVRA	10	Unmodified	_VLLTFGSVRA_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000548622.1_1_12:104324188-104325414:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.817626953125	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.98754	1	11068	11068		47.657	0	1	3781500			85458	7589	59547	59639	94815	94815					0.09498308748334239
VLLTFGSVRA	10	Unmodified	_VLLTFGSVRA_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000548622.1_1_12:104324188-104325414:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.816650390625	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.0992	1	10726	10726		32.812	0	1	4853400			85459	7589	59547	59639	94816	94816					0.09498308748334239
VLLTFPTPG	9	Unmodified	_VLLTFPTPG_					0	0	0		ENST00000498057.1_1_3:48678700-48679554:-|nuORF	ENST00000498057.1_1_3:48678700-48679554:-|nuORF	ENST00000498057.1_1_3:48678700-48679554:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.7779541015625	2	472.776211	943.537869	-0.34485	-0.00016304	0.73701	0.00034844	0.39216	0.0001854	472.7763802643566	79.401	2.2977	79.229	78.195	80.493	-0.17226					108	54	3	0	0	0	0.75282	1	9895	9895		42.474	12.633	1	1264700			85460	15612	59548	59640	94817	94817					0.06384143562650024
VLLTHLLV	8	Unmodified	_VLLTHLLV_					0	0	0		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.3024597167969	2	454.302396	906.590239	-0.13391	-6.0836E-05	0.25357	0.0001152	0.11966	5.436E-05	454.30240875554233	60.384	0.89383	60.384	60.027	60.921	0					68	23	4	0	0	0	0.82104	1	6939	6939		57.453	0	1	5804800			85461	5253	59549	59641	94818	94818					0.13320726696292695
VLLTHLLV	8	Unmodified	_VLLTHLLV_					0	0	0		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.3023681640625	2	454.302396	906.590239	-0.40778	-0.00018525	0.48158	0.00021878	0.073808	3.3531E-05	454.30249065456167	60.652	1.1657	60.439	60	61.166	-0.21339					78	30	4	0	0	0	0.82104	2	6944	6944;6979		57.453	0	1	5020400			85462	5253	59549	59641	94819;94820	94819					0.13320726696292695
VLLTHLLV	8	Unmodified	_VLLTHLLV_					0	0	0		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.3023376464844	2	454.302396	906.590239	-1.6978	-0.00077133	1.831	0.00083181	0.13311	6.0474E-05	454.3030965930214	60.403	1.1292	60.481	59.974	61.103	0.078888					72	29	4	0	0	0	0.61897	1	6849	6849		74.517	8.6191	1	5922700			85463	5253	59549	59641	94821	94821					0.13320726696292695
VLLTIKCLL	9	Unmodified	_VLLTIKCLL_					0	0	0		ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	ENSG00000108106|ENST00000264552|UBE2S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.28173828125	2	508.332839	1014.65112	1.6552	0.00084139	-1.4809	-0.00075277	0.17432	8.8613E-05	508.33190206711396	23.537	0.20111	23.346	23.284	23.485	-0.19117					10	4	3	0	0	0	0.024541	1	927	927		24.203	0	1	55516			85464	2879	59550	59642	94822	94822					0.1443849568419182
VLLTLQKP	8	Unmodified	_VLLTLQKP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.1557312011719	2	456.299853	910.585153	-0.69603	-0.0003176	2.3228	0.0010599	1.6268	0.00074229	456.30081349833944	38.964	1.1053	38.799	38.625	39.731	-0.16459					44	29	2	0	0	0	0.027866	1	3410	3410		37.159	22.294	1	231100			85465	5087	59551	59643	94823	94823					0.1262842283365444
VLLTLQKP	8	Unmodified	_VLLTLQKP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.1557312011719	2	456.299853	910.585153	-0.3968	-0.00018106	3.5791	0.0016332	3.1823	0.0014521	456.30133234693466	40.2	1.6481	40.05	39.553	41.201	-0.1497					64	43	2	0	0	0	0.027866	1	3410	3410		37.159	22.294	1	786080			85466	5087	59551	59643	94824	94824					0.1262842283365444
VLLTLQKP	8	Unmodified	_VLLTLQKP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	456.299853	910.585153	0.63724	0.00029077	2.2898	0.0010448	2.927	0.0013356	456.3007733119435	40.142	1.4926	40.142	39.661	41.153	0	-0.12113	-0.00065886	NaN	37.159	83	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899870			85467	5087	59551	59643							0.1262842283365444
VLLTLQKP	8	Unmodified	_VLLTLQKP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	456.299853	910.585153	0.55276	0.00025222	2.5607	0.0011684	3.1135	0.0014207	456.30087400147994	40.397	1.9791	40.285	39.83	41.809	-0.11223	0.021407	-0.00041163	NaN	37.159	97	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745870			85468	5087	59551	59643							0.1262842283365444
VLLTLQKP	8	Unmodified	_VLLTLQKP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	456.299853	910.585153	-0.23877	-0.00010895	3.1658	0.0014446	2.9271	0.0013356	456.3011331431189	40.521	1.8768	40.544	40.013	41.89	0.023006	0.28086	0.00014061	NaN	37.159	91	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1315100			85469	5087	59551	59643							0.1262842283365444
VLLTLQKP	8	Unmodified	_VLLTLQKP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.299853	910.585153	-0.21659	-9.8832E-05	3.3113	0.0015109	3.0947	0.0014121	456.30126602218616	40.491	1.8523	40.266	39.813	41.665	-0.225	0.002785	0.00027336	NaN	37.159	74	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1228500			85470	5087	59551	59643							0.1262842283365444
VLLTLQKP	8	Unmodified	_VLLTLQKP_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.299853	910.585153	-1.1123	-0.00050756	4.2218	0.0019264	3.1095	0.0014189	456.30163335632034	40.524	1.8372	40.293	39.851	41.688	-0.23021	0.029732	0.0011043	NaN	37.159	88	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1129000			85471	5087	59551	59643							0.1262842283365444
VLLTLVAPIT	10	Unmodified	_VLLTLVAPIT_					0	0	0			REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220	REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3399047851562	2	520.341718	1038.66888	-0.85581	-0.00044532	-2.1686	-0.0011284	-3.0244	-0.0015737	520.3404255871862	23.102	0.75929	23.102	22.848	23.607	0					42	17	3	0	0	0	1.1166	1	897	897		30.504	0	1	946820	+		85472	27981	59552	59644	94825	94825					0.15109534210682796
VLLTRKDIC	9	Unmodified	_VLLTRKDIC_					0	0	0		ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant;nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	ADAMTS12|p.G831Afs*8|1|0.32|ENSG00000151388|chr5:33614273-33614273|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.8139038085938	2	530.812802	1059.61105	-0.24966	-0.00013252	0.7419	0.00039381	0.49224	0.00026129	530.8130961945517	77.862	1.5762	77.6	77.356	78.932	-0.26202					92	36	4	0	0	0	0.25032	1	9279	9279		82.305	5.4584	1	3237300			85473	25	59553	59645	94826	94826					0.08362949013621801
VLLTRRARTLS	11	Unmodified	_VLLTRRARTLS_					0	0	0		ENSG00000186364|ENST00000334513|NUDT17;ENST00000498192.5_1_1:145588480-145589073:-|nuORF;ENST00000477878.5_1_1:145588480-145589427:-|nuORF	ENSG00000186364|ENST00000334513|NUDT17	ENSG00000186364|ENST00000334513|NUDT17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	643.3997192382812	2	643.406778	1284.799	1.1133	0.00071631	-1.2277	-0.00078994	-0.11444	-7.3635E-05	643.406068364471	104.31	0.59724	104.31	104.02	104.62	0.0031357					37	14	4	0	0	0	0.024785	1	13368	13368		11.636	6.4158	1	372490			85474	9543	59554	59646	94827	94827					0.16799523262420735
VLLTTIQAQF	10	Unmodified	_VLLTTIQAQF_					0	0	0			REV__ENSG00000125755|ENST00000245934|SYMPK	REV__ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3297119140625	2	567.331882	1132.64921	-0.10765	-6.1074E-05	-3.625	-0.0020566	-3.7326	-0.0021176	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.1265	1	10835	10835		24.519	3.5723	1	5896300	+		85475	22840	59555	59647	94828	94828					0.0881915819995811
VLLVAGWILP	10	Unmodified	_VLLVAGWILP_					0	0	0			REV__nc|ENSG00000161911|Q86YW5-2|TREML1	REV__nc|ENSG00000161911|Q86YW5-2|TREML1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8316040039062	2	540.844428	1079.6743	-0.97638	-0.00052807	4.4731	0.0024193	3.4967	0.0018912	540.8468203844516	75.637	0.20801	75.393	75.339	75.547	-0.24455					8	5	2	0	0	0	0.03519	1	9257	9257		54.765	0	1	406920	+		85476	25406	59556	59648	94829	94829					0.13765257793193086
VLLVAPVASL	10	Unmodified	_VLLVAPVASL_					0	0	0			REV__ENSG00000054803|ENST00000064571|CBLN4	REV__ENSG00000054803|ENST00000064571|CBLN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.291259765625	2	491.320786	980.627018	-0.45398	-0.00022305	1.8591	0.00091342	1.4051	0.00069038	491.3215082660114	66.442	0.49401	66.472	66.324	66.818	0.030098					23	14	2	0	0	0	0.03519	1	7835	7835		37.159	0	1	1115100	+		85477	20195	59557	59649	94830	94830					0.1359297852217196
VLLVASQPVE	10	Unmodified	_VLLVASQPVE_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7695922851562	2	527.810782	1053.60701	-0.66318	-0.00035004	0.28186	0.00014877	-0.38132	-0.00020126	527.8105742569697	53.91	0.66677	53.91	53.618	54.285	0					35	18	2	0	0	0	0.03519	1	5811	5811		37.812	0	1	1113300			85478	6178	59558	59650	94831	94831					0.08235182791554507
VLLVDDLSV	9	Unmodified	_VLLVDDLSV_					0	0	0		ENSG00000163832|ENST00000296149|ELP6;nc|ENSG00000163832|Q0PNE2-2|ELP6	ENSG00000163832|ENST00000296149|ELP6;nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7839050292969	2	486.784233	971.553913	0.35347	0.00017206	-0.60482	-0.00029442	-0.25135	-0.00012235	486.78388065302573	100.91	2.3972	100.74	100.32	102.72	-0.17178					119	58	3	0	0	0	0.78069	1	12620	12620		40.573	4.9543	1	13095000			85479	7155;18453	59559	59651	94832	94832					0.06699805008906878
VLLVPLSELKN	11	Unmodified	_VLLVPLSELKN_					0	0	0		ENST00000369005.5_2_10:123970214-123970343:+|nuORF	ENST00000369005.5_2_10:123970214-123970343:+|nuORF	ENST00000369005.5_2_10:123970214-123970343:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	408.92218017578125	3	408.923585	1223.74892	0.53896	0.00022039	-2.9764	-0.0012171	-2.4375	-0.00099674	408.9219207611176	103.38	1.6685	103.26	102.75	104.42	-0.12724					74	41	4	0	0	0	1.0123	1	12870	12870		34.087	9.8547	1	776240			85480	12912	59560	59652	94833	94833					0.14599975813894162
VLLVPLSELKN	11	Unmodified	_VLLVPLSELKN_					0	0	0		ENST00000369005.5_2_10:123970214-123970343:+|nuORF	ENST00000369005.5_2_10:123970214-123970343:+|nuORF	ENST00000369005.5_2_10:123970214-123970343:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	408.923585	1223.74892	0.31907	0.00013048	-2.3424	-0.00095786	-2.0233	-0.00082738	408.92206108975233	103.5	1.8197	103.33	102.8	104.62	-0.17034	0.058555	0.00036671	NaN	34.087	60	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303160			85481	12912	59560	59652							0.14599975813894162
VLLVQIDDK	9	Unmodified	_VLLVQIDDK_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8131103515625	2	521.810782	1041.60701	-0.37996	-0.00019827	4.1607	0.0021711	3.7807	0.0019728	521.8129367151431	41.316	0.74377	41.316	40.944	41.688	0					65	18	4	0	0	0	0.93097	1	3697	3697		30.318	1.1477	1	14596000			85482	2241	59561	59653	94834	94834					0.0878718279154782
VLLVQIDDK	9	Unmodified	_VLLVQIDDK_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.8128662109375	2	521.810782	1041.60701	-0.33508	-0.00017485	4.428	0.0023106	4.0929	0.0021357	521.8130217566711	41.917	1.8968	41.917	41.579	43.475	0					149	53	4	0	0	0	0.91321	1	3797	3797		31.53	1.0262	1	7471500			85483	2241	59561	59653	94835	94835					0.0878718279154782
VLLVQIDDK	9	Unmodified	_VLLVQIDDK_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.81298828125	2	521.810782	1041.60701	-0.21676	-0.00011311	4.2662	0.0022262	4.0494	0.002113	521.8130103174198	42.098	1.6966	42.124	41.821	43.517	0.026016					122	47	3	0	0	0	0.80003	1	3798	3798		39.253	0.44669	1	8235700			85484	2241	59561	59653	94836	94836					0.0878718279154782
VLLVQRELSI	10	Unmodified	_VLLVQRELSI_					0	0	0			REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	585.3627319335938	2	585.366256	1168.71796	-0.57984	-0.00033942	-2.5668	-0.0015025	-3.1467	-0.001842	585.3647032757316	96	1.0136	96.007	95.647	96.66	0.0065079					44	23	2	0	0	0	1.0992	1	12205	12205		32.812	2.4947	1	476700	+		85485	36600	59562	59654	94837	94837					0.14034822499684196
VLLVQRELSI	10	Unmodified	_VLLVQRELSI_					0	0	0			REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	585.366256	1168.71796	-1.5207	-0.00089015	-2.0089	-0.0011759	-3.5295	-0.0020661	585.3649405471673	96.109	1.0574	96.109	95.735	96.792	0	0.04594	0.00099283	NaN	32.812	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492430	+		85486	36600	59562	59654							0.14034822499684196
VLLVQRELSI	10	Unmodified	_VLLVQRELSI_					0	0	0			REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	585.366256	1168.71796	-0.57984	-0.00033942	-2.5668	-0.0015025	-3.1467	-0.001842	585.3647032757316	96	1.0136	96.007	95.647	96.66	0.0065079	-0.05645	0.00033959	NaN	32.812	44	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476700	+		85487	36600	59562	59654							0.14034822499684196
VLLVQRELSI	10	Unmodified	_VLLVQRELSI_					0	0	0			REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	585.366256	1168.71796	1.4104	0.00082563	-4.6308	-0.0027107	-3.2204	-0.0018851	585.3635189735419	96.104	0.96735	96.107	95.739	96.707	0.0020752	0.043215	-0.0020768	NaN	32.812	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475960	+		85488	36600	59562	59654							0.14034822499684196
VLLVQRELSI	10	Unmodified	_VLLVQRELSI_					0	0	0			REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	585.366256	1168.71796	0.08575	5.0195E-05	-3.1729	-0.0018573	-3.0872	-0.0018071	585.3643680785276	96.123	0.93053	95.986	95.682	96.613	-0.1367	-0.07749	-0.00036997	NaN	32.812	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341980	+		85489	36600	59562	59654							0.14034822499684196
VLLVQRELSI	10	Unmodified	_VLLVQRELSI_					0	0	0			REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	585.366256	1168.71796	0.00019969	1.1689E-07	-3.1857	-0.0018648	-3.1855	-0.0018647	585.3644607528693	96.156	0.93396	96.033	95.728	96.662	-0.12305	-0.030037	-0.00038494	NaN	32.812	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375290	+		85490	36600	59562	59654							0.14034822499684196
VLLVQRELSI	10	Unmodified	_VLLVQRELSI_					0	0	0			REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	REV__nc|ENSG00000117543|Q9H2P9-4|DPH5	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.366256	1168.71796	-0.8119	-0.00047526	-2.2101	-0.0012937	-3.022	-0.001769	585.3649736541947	96.295	0.89432	96.138	95.794	96.688	-0.15646	0.074822	0.00075723	NaN	32.812	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255440	+		85491	36600	59562	59654							0.14034822499684196
VLLVSLVVI	9	Unmodified	_VLLVSLVVI_					0	0	0		ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	ENSG00000134294|ENST00000256689|SLC38A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.8353271484375	2	477.833529	953.652505	0.39262	0.00018761	0.073048	3.4905E-05	0.46566	0.00022251	477.8334281447745	105.79	1.1708	105.79	105.37	106.54	-0.0013199					118	39	4	0	0	0	1.0281	1	13569	13569		14.664	0	1	1956600			85492	4778	59563	59655	94838	94838					0.173824530446268
VLLVVEGFQP	10	Unmodified	_VLLVVEGFQP_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2952270507812	2	550.82115	1099.62775	0.1642	9.0443E-05	-0.18421	-0.00010147	-0.020013	-1.1024E-05	550.8209186459341	96.173	0.92999	96.179	95.818	96.748	0.0065002					39	21	3	0	0	0	0.03519	1	12175	12175		35.618	0	1	163260	+		85493	23894	59564	59656	94839	94839					0.08191773171233763
VLLWCIPAL	9	Unmodified	_VLLWCIPAL_					0	0	0		ENST00000388966.4_1_12:8169981-8170332:-|nuORF	ENST00000388966.4_1_12:8169981-8170332:-|nuORF	ENST00000388966.4_1_12:8169981-8170332:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	514.8214111328125	2	514.304081	1026.59361	-0.69516	-0.00035753	0.1422	7.3132E-05	-0.55297	-0.00028439	514.3050661486485	56.638	0.20158	56.736	56.616	56.818	0.097893					7	5	2	0	0	0	0.024389	1	6230	6230		29.842	0	1	96566			85494	13373	59565	59657	94840	94840					0.08137653478615903
VLLWVIKV	8	Unmodified	_VLLWVIKV_					0	0	0		nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7;ENST00000465487.5_1_3:27418257-27433320:-|nuORF	nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	nc|ENSG00000033867|Q9Y6M7-5|SLC4A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.3132629394531	2	485.328414	968.642274	-0.73323	-0.00035586	2.3734	0.0011519	1.6401	0.00079601	485.32993148060274	44.252	0.16645	44.289	44.209	44.375	0.0369					7	4	2	0	0	0	0.027866	1	4151	4151		57.453	10.686	1	337470			85495	1026	59566	59658	94841	94841					0.1566989011004125
VLLYIICIV	9	Unmodified	_VLLYIICIV_					0	0	0		ENST00000553612.5_1_14:81644196-81644316:-|nuORF	ENST00000553612.5_1_14:81644196-81644316:-|nuORF	ENST00000553612.5_1_14:81644196-81644316:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.8267211914062	2	524.827389	1047.64023	0.15236	7.9965E-05	-0.99221	-0.00052074	-0.83984	-0.00044077	524.8267476679999	97.913	2.4605	97.923	97.283	99.743	0.010231					170	56	6	0	0	0	0.93795	1	12425	12425		29.842	0	1	13084000			85496	16642	59567	59659	94842	94842					0.11831093309911012
VLLYPEKEE	9	Unmodified	_VLLYPEKEE_					0	0	0		CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	560.3240966796875	2	560.300247	1118.58594	-0.091567	-5.1305E-05	3.7755	0.0021154	3.6839	0.0020641	560.3029703428018	68.179	0.35094	67.89	67.784	68.135	-0.28947					9	8	2	0	0	0	0.024477	1	8147	8147		44.117	14.275	1	299650		+	85497	492	59568	59660	94843	94843					0.03139172692044667
VLLYRQDL	8	Unmodified	_VLLYRQDL_					0	0	0			REV__ENST00000601803.5_1_19:19032987-19035509:+|nuORF	REV__ENST00000601803.5_1_19:19032987-19035509:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.79608154296875	2	510.297842	1018.58113	-0.066298	-3.3832E-05	0.017927	9.1481E-06	-0.048371	-2.4683E-05	510.2975590163441	61.353	0.86636	61.353	61.108	61.974	0					36	22	2	0	0	0	0.027866	1	7169	7169		50.025	0	1	1426400	+		85498	21553	59569	59661	94844	94844					0.07258333339939327
VLLYSVVVVV	10	Unmodified	_VLLYSVVVVV_					0	0	0		ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3168334960938	2	545.349543	1088.68453	0.38932	0.00021231	-1.4717	-0.00080259	-1.0824	-0.00059027	545.3484166856673	87.042	0.3765	86.906	86.675	87.051	-0.13613					15	8	2	0	0	0	0.03519	1	10584	10584		16.473	0	1	164390			85499	3782	59570	59662	94845	94845					0.14373820727746534
VLMCHEPNI	9	Unmodified	_VLMCHEPNI_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.7693481445312	2	528.254262	1054.49397	-1.0964	-0.0005792	-1.9764	-0.001044	-3.0728	-0.0016232	528.2531683430898	53.512	0.68954	53.365	52.985	53.675	-0.14723					34	18	2	0	0	0	0.022924	1	5758	5758		85.359	7.0957	1	1751600	+		85500	28462	59571	59663	94846	94846					-0.03109532197640874
VLMCHEPNI	9	Unmodified	_VLMCHEPNI_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	528.254262	1054.49397	-0.36865	-0.00019474	-2.2098	-0.0011673	-2.5784	-0.0013621	528.2528826762889	53.622	0.39603	53.376	53.163	53.559	-0.2453	0.041772	-2.6607E-05	NaN	85.359	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1551600	+		85501	28462	59571	59663							-0.03109532197640874
VLMDLMYL	8	Unmodified	_VLMDLMYL_					0	0	0		OR2T3|p.A72V|1|0.27|ENSG00000196539|chr1:248473565-248473565|C/T|missense_variant	OR2T3|p.A72V|1|0.27|ENSG00000196539|chr1:248473565-248473565|C/T|missense_variant	OR2T3|p.A72V|1|0.27|ENSG00000196539|chr1:248473565-248473565|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8959655761719	2	499.258482	996.502411	0.23629	0.00011797	0.3744	0.00018692	0.61069	0.00030489	499.25847975274075	46.36	0.72622	46.36	46.126	46.852	0					44	19	4	0	0	0	0.027866	1	4553	4553		49.211	17.256	1	905410			85502	18913	59572	59664	94847	94847					0.004020217189918185
VLMDQRLD	8	Unmodified	_VLMDQRLD_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2700500488281	2	495.257859	988.501166	0.55711	0.00027591	-3.226	-0.0015977	-2.6689	-0.0013218	495.2560782133673	39.986	0.78605	39.986	39.495	40.281	0					33	21	2	0	0	0	0.027866	1	3443	3443		85.359	25.066	1	193780	+		85503	36711	59573	59665	94848	94848					0.006455236744386639
VLMDQRLD	8	Unmodified	_VLMDQRLD_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	495.26947021484375	2	495.257859	988.501166	-0.53452	-0.00026472	-2.6091	-0.0012922	-3.1436	-0.0015569	495.2566152080317	40.051	0.81112	39.939	39.467	40.278	-0.11222					32	21	2	0	0	0	0.027866	1	3449	3449		71.296	0	1	222110	+		85504	36711	59573	59665	94849	94849					0.006455236744386639
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	522.2998046875	2	522.299527	1042.5845	-0.7879	-0.00041152	0.61378	0.00032058	-0.17412	-9.0941E-05	522.2996407688547	69.129	0.74364	69.129	68.6	69.344	0					59	19	4	0	0	0	0.247	1	8305	8305		82.75	17.285	1	2279000			85505	5547	59574	59666	94850	94850					0.06491260122288622
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.8341674804688	2	522.299527	1042.5845	0.23076	0.00012053	-0.53338	-0.00027859	-0.30262	-0.00015806	522.2990664073097	69.408	0.83131	69.115	68.595	69.427	-0.29292					54	21	3	0	0	0	0.023291	1	8337	8337		101.25	16.337	1	2873100			85506	5547	59574	59666	94851	94851					0.06491260122288622
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.2999877929688	2	522.299527	1042.5845	-0.41026	-0.00021428	0.19469	0.00010169	-0.21556	-0.00011259	522.2994877877012	69.171	0.81969	69.186	68.607	69.426	0.015129					54	21	3	0	0	0	0.17845	2	8240	8240;8252		93.143	30.197	1	2422500			85507	5547	59574	59666	94852;94853	94852					0.06491260122288622
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.2994995117188	2	522.299527	1042.5845	0.37258	0.0001946	0.24456	0.00012774	0.61714	0.00032233	522.2988967475337	69.296	0.90385	69.053	68.587	69.491	-0.24277					45	21	3	0	0	0	0.086035	1	8047	8047		115.49	41.519	1	1055900			85508	5547	59574	59666	94854	94854					0.06491260122288622
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	522.299527	1042.5845	-0.9422	-0.00049211	3.6436	0.001903	2.7014	0.0014109	522.2997119239535	69.453	0.91498	69.185	68.621	69.536	-0.26724	0.054318	0.0036022	NaN	101.25	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	919290			85509	5547	59574	59666							0.06491260122288622
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	522.299527	1042.5845	-0.12254	-6.4001E-05	0.071055	3.7112E-05	-0.051482	-2.6889E-05	522.2991446079737	69.341	0.87035	69.118	68.685	69.556	-0.22245	-0.012847	-0.00012961	NaN	101.25	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1050500			85510	5547	59574	59666							0.06491260122288622
VLMENIVYL	9	Oxidation (M)	_VLM(Oxidation (M))ENIVYL_		VLM(1)ENIVYL		VLM(120)ENIVYL	0	0	1		nc|ENSG00000133706|Q9P2J5-3|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-3|LARS1	nc|ENSG00000133706|Q9P2J5-3|LARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.299072265625	2	555.299193	1108.58383	0.39213	0.00021775	-0.48176	-0.00026752	-0.089625	-4.9769E-05	555.2986311062564	78.439	1.0751	78.247	77.891	78.966	-0.19211					59	25	4	0	0	0	0.067814	1	9679	9679		122.18	20.575	1	1544300			85511	4726	59575	59667	94855	94855		188			0.03388420682586002
VLMENIVYL	9	Oxidation (M)	_VLM(Oxidation (M))ENIVYL_		VLM(1)ENIVYL		VLM(99)ENIVYL	0	0	1		nc|ENSG00000133706|Q9P2J5-3|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-3|LARS1	nc|ENSG00000133706|Q9P2J5-3|LARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.2989501953125	2	555.299193	1108.58383	-0.23696	-0.00013158	0.018891	1.049E-05	-0.21807	-0.00012109	555.2990150130984	78.281	1.118	78.297	77.989	79.107	0.015907					65	26	4	0	0	0	0.15366	1	9613	9613		98.629	24.655	1	1810300			85512	4726	59575	59667	94856	94856		188			0.03388420682586002
VLMGHFPCK	9	Unmodified	_VLMGHFPCK_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.F2612Lfs*63|1|0.25|ENSG00000205038|chr8:109464663-109464663|T/-|frameshift_variant;PKHD1L1|p.G2188Efs*28|1|0.42|ENSG00000205038|chr8:109452767-109452767|G/-|frameshift_variant	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.801025390625	2	516.26189	1030.50923	-0.62699	-0.00032369	4.0382	0.0020848	3.4112	0.0017611	516.2637708772905	37.048	0.46759	37.08	36.797	37.264	0.032269					17	11	2	0	0	0	0.024357	1	2894	2894		54.765	16.953	1	202530			85513	10401	59576	59668	94857	94857					-0.00480620609801008
VLMGNPLVLQ	10	Unmodified	_VLMGNPLVLQ_					0	0	0		ENST00000475666.1_1_2:242048116-242051833:-|nuORF	ENST00000475666.1_1_2:242048116-242051833:-|nuORF	ENST00000475666.1_1_2:242048116-242051833:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.2989501953125	2	542.315177	1082.6158	0.1957	0.00010613	-3.0241	-0.00164	-2.8284	-0.0015339	542.3126671910676	72.687	0.12066	72.405	72.344	72.465	-0.28124					4	2	2	0	0	0	0.03519	1	8813	8813		14.865	0	1	53709			85514	15067	59577	59669	94858	94858					0.07779833156405402
VLMGSLVYL	9	Unmodified	_VLMGSLVYL_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.78558349609375	2	497.785721	993.55689	-1.0782	-0.00053673	0.35457	0.0001765	-0.72366	-0.00036023	497.785769002404	90.878	0.62161	90.878	90.511	91.133	0					38	14	4	0	0	0	0.18276	1	11501	11501		92.191	20.813	1	846460			85515	6350	59578	59670	94859	94859					0.05985356862061053
VLMGSLVYL	9	Unmodified	_VLMGSLVYL_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.7843017578125	2	497.785721	993.55689	0.4058	0.000202	-1.3509	-0.00067245	-0.94508	-0.00047045	497.784824412729	90.877	0.66096	90.889	90.576	91.237	0.011276					40	15	4	0	0	0	0.52323	1	11438	11438		57.811	2.3071	1	1045900			85516	6350	59578	59670	94860	94860					0.05985356862061053
VLMGSLVYL	9	Unmodified	_VLMGSLVYL_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	497.785721	993.55689	-1.2345	-0.00061449	-0.2906	-0.00014466	-1.5251	-0.00075915	497.785568001951	90.736	0.37782	90.581	90.348	90.725	-0.1552	-0.17422	0.00027827	NaN	92.191	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109110			85517	6350	59578	59670							0.05985356862061053
VLMGSLVYL	9	Unmodified	_VLMGSLVYL_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	497.785721	993.55689	-0.64225	-0.0003197	-1.51	-0.00075167	-2.1523	-0.0010714	497.78519289113274	90.776	0.33634	90.651	90.416	90.753	-0.12512	-0.10388	-0.00093576	NaN	92.191	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121540			85518	6350	59578	59670							0.05985356862061053
VLMGSLVYL	9	Unmodified	_VLMGSLVYL_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	497.785721	993.55689	0.095663	4.762E-05	-1.248	-0.00062121	-1.1523	-0.00057359	497.78489650569253	90.81	0.37439	90.671	90.449	90.824	-0.13908	-0.083531	-0.00067484	NaN	92.191	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104130			85519	6350	59578	59670							0.05985356862061053
VLMPPDAIK	9	Unmodified	_VLMPPDAIK_					0	0	0		SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant;ENSG00000198879|ENST00000397167|SFMBT2	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.3026428222656	2	492.283346	982.552139	0.53293	0.00026235	3.842	0.0018913	4.3749	0.0021537	492.28565943128626	95.746	0.83353	95.748	95.481	96.314	0.0020752					27	19	3	0	0	0	0.024427	1	12121	12121		51.335	27.133	1	128960			85520	10235	59579	59671	94861	94861					0.06016472719284138
VLMPPDAIK	9	Unmodified	_VLMPPDAIK_					0	0	0		SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant;ENSG00000198879|ENST00000397167|SFMBT2	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.283346	982.552139	-0.23962	-0.00011796	5.2019	0.0025608	4.9622	0.0024428	492.2860622308708	95.797	0.88513	95.66	95.419	96.304	-0.13689	-0.068788	0.00059291	NaN	51.335	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173530			85521	10235	59579	59671							0.06016472719284138
VLMPPDAIK	9	Unmodified	_VLMPPDAIK_					0	0	0		SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant;ENSG00000198879|ENST00000397167|SFMBT2	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.283346	982.552139	0.80136	0.0003945	4.0203	0.0019791	4.8217	0.0023736	492.2854569697737	95.843	1.1496	95.72	95.29	96.44	-0.12268	-0.009124	-0.00057042	NaN	51.335	49	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147020			85522	10235	59579	59671							0.06016472719284138
VLMPPDAIK	9	Unmodified	_VLMPPDAIK_					0	0	0		SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant;ENSG00000198879|ENST00000397167|SFMBT2	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	SFMBT2|p.D225Tfs*38|1|0.1|ENSG00000198879|chr10:7284003-7284003|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	492.283346	982.552139	-0.15215	-7.4899E-05	4.8606	0.0023928	4.7085	0.0023179	492.28585568208973	95.985	1.1541	95.828	95.356	96.511	-0.15646	0.099419	0.00025696	NaN	51.335	42	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168670			85523	10235	59579	59671							0.06016472719284138
VLMQPVTTT	9	Unmodified	_VLMQPVTTT_					0	0	0			REV__ENSG00000177535|ENST00000641149|OR2B11	REV__ENSG00000177535|ENST00000641149|OR2B11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.26947021484375	2	495.270435	988.526318	-0.9545	-0.00047274	0.6761	0.00033485	-0.27839	-0.00013788	495.27068300468716	39.819	1.0202	39.707	39.398	40.418	-0.11223					43	27	2	0	0	0	0.29158	1	3449	3449		76.774	4.8967	1	1962000	+		85524	27121	59580	59672	94862	94862					0.03159578477016112
VLMQQQNE	8	Unmodified	_VLMQQQNE_					0	0	0			REV__ENSG00000088808|ENST00000202556|PPP1R13B	REV__ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2700500488281	2	495.239667	988.46478	0.54913	0.00027195	-3.7908	-0.0018773	-3.2416	-0.0016054	495.2378206127139	40.157	0.75197	40.157	39.562	40.314	0					27	20	2	0	0	0	0.027866	1	3443	3443		65.803	25.231	1	155370	+		85525	20821	59581	59673	94863	94863					-0.029913532222622052
VLMQQQNE	8	Unmodified	_VLMQQQNE_					0	0	0			REV__ENSG00000088808|ENST00000202556|PPP1R13B	REV__ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	495.239667	988.46478	-0.1607	-7.9586E-05	-3.3349	-0.0016516	-3.4957	-0.0017312	495.23794091988555	40.199	0.44545	40.087	39.867	40.312	-0.11223	-0.099308	-0.00014923	NaN	65.803	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123390	+		85526	20821	59581	59673							-0.029913532222622052
VLMQQQNE	8	Unmodified	_VLMQQQNE_					0	0	0			REV__ENSG00000088808|ENST00000202556|PPP1R13B	REV__ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	495.239667	988.46478	-0.68658	-0.00034002	-2.9025	-0.0014374	-3.5891	-0.0017775	495.23799052779816	40.334	0.56772	40.357	40.162	40.73	0.023006	0.17097	0.0002791	NaN	65.803	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172750	+		85527	20821	59581	59673							-0.029913532222622052
VLMQQQNE	8	Unmodified	_VLMQQQNE_					0	0	0			REV__ENSG00000088808|ENST00000202556|PPP1R13B	REV__ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	495.239667	988.46478	-0.11633	-5.7609E-05	-1.8085	-0.00089564	-1.9248	-0.00095325	495.238795405764	40.368	0.44936	40.143	39.773	40.222	-0.22501	-0.042586	0.0013627	NaN	65.803	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96112	+		85528	20821	59581	59673							-0.029913532222622052
VLMSRTGGSV	10	Unmodified	_VLMSRTGGSV_					0	0	0			REV__ENST00000256496.7_1_3:5220967-5221039:+|nuORF	REV__ENST00000256496.7_1_3:5220967-5221039:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.786865234375	2	503.771134	1005.52771	-0.12234	-6.163E-05	1.3729	0.00069162	1.2506	0.00062999	503.7710444038547	54.561	0.17504	54.41	54.266	54.442	-0.15036					6	4	2	0	0	0	0.03519	1	5923	5923		69.628	0	1	57770	+		85529	29554	59582	59674	94864	94864					0.0251721256579458
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(180)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2968139648438	2	539.29665	1076.57875	-0.33389	-0.00018007	0.010223	5.5131E-06	-0.32367	-0.00017455	539.2966724170291	58.054	1.1097	58.054	57.641	58.75	0					70	29	3	0	0	0	0.013293	8	6585	6524;6535;6548;6560;6572;6585;6597;6609		190.52	60.835	1	18723000			85530	3392	59583	59675	94865;94866;94867;94868;94869;94870;94871;94872	94870		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(180)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2962036132812	2	539.29665	1076.57875	-0.46155	-0.00024891	-0.42235	-0.00022777	-0.8839	-0.00047668	539.296537336968	60.204	2.5623	60.204	59.482	62.044	0					139	68	3	0	0	0	0.013293	4	6952	6925;6938;6952;6983		176.09	67.999	1	7206900			85531	3392	59583	59675	94873;94874;94875;94876	94875		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(150)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.2962646484375	2	539.29665	1076.57875	-0.29369	-0.00015839	-0.18333	-9.8868E-05	-0.47702	-0.00025726	539.2964536386496	65.589	1.2034	65.589	65.02	66.224	0					65	32	4	0	0	0	0.020687	3	7761	7761;7772;7784		148.99	45.491	1	5987000			85532	3392	59583	59675	94877;94878;94879	94877		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(160)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.296142578125	2	539.29665	1076.57875	-1.1835	-0.00063828	0.79657	0.00042959	-0.38697	-0.00020869	539.2971576899049	58.309	1.1217	58.133	57.683	58.804	-0.17616					93	30	5	0	0	0	0.014918	7	6569	6533;6544;6557;6569;6580;6593;6606		190.52	69.897	1	16838000			85533	3392	59583	59675	94880;94881;94882;94883;94884;94885;94886	94883		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(180)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.296630859375	2	539.29665	1076.57875	-0.95545	-0.00051527	0.13338	7.1929E-05	-0.82207	-0.00044334	539.29676216482	60.482	2.6461	60.268	59.487	62.133	-0.2134					121	70	2	0	0	0	0.013293	7	6928	6928;6940;6955;6967;6978;6992;7010		176.09	58.21	1	7615100			85534	3392	59583	59675	94887;94888;94889;94890;94891;94892;94893	94887		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(160)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.2963256835938	2	539.29665	1076.57875	-0.59773	-0.00032236	-0.027791	-1.4988E-05	-0.62553	-0.00033734	539.2966210567517	65.827	1.0908	65.554	65.09	66.181	-0.27282					65	29	4	0	0	0	0.014918	4	7783	7772;7783;7797;7808		162.25	54.165	1	6091600			85535	3392	59583	59675	94894;94895;94896;94897	94895		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(180)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.29638671875	2	539.29665	1076.57875	-1.099	-0.00059269	0.85393	0.00046052	-0.24508	-0.00013217	539.2970905242147	57.979	1.0673	58.07	57.604	58.671	0.091217					70	28	3	0	0	0	0.013293	8	6434	6422;6434;6446;6459;6471;6483;6497;6509		176.09	55.466	1	20150000			85536	3392	59583	59675	94898;94899;94900;94901;94902;94903;94904;94905	94899		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(160)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.2967529296875	2	539.29665	1076.57875	-1.9529	-0.0010532	1.08	0.00058242	-0.8729	-0.00047075	539.2972929122448	60.113	2.6116	60.191	59.457	62.069	0.078888					161	69	3	0	0	0	0.014918	6	6856	6831;6844;6856;6867;6881;6936		162.25	59.479	1	6659100			85537	3392	59583	59675	94906;94907;94908;94909;94910;94911	94908		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(160)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.2963256835938	2	539.29665	1076.57875	-0.68228	-0.00036795	0.1703	9.1843E-05	-0.51198	-0.00027611	539.2966837016994	65.54	1.0178	65.577	65.187	66.205	0.037384					71	27	5	0	0	0	0.014918	4	7692	7683;7692;7706;7718		162.25	52.796	1	8983200			85538	3392	59583	59675	94912;94913;94914;94915	94913		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(130)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.296630859375	2	539.29665	1076.57875	-0.50889	-0.00027444	1.0175	0.00054876	0.50865	0.00027431	539.2969858809365	65.778	1.0211	65.536	65.126	66.148	-0.24145					65	24	4	0	0	0	0.043667	2	7522	7522;7534		131.03	30.669	1	2687200			85539	3392	59583	59675	94916;94917	94916		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(140)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2962036132812	2	539.29665	1076.57875	-1.3016	-0.00070195	1.5867	0.00085572	0.28512	0.00015377	539.2973086792285	65.757	1.0569	65.543	65.175	66.232	-0.21327					63	25	4	0	0	0	0.03666	1	7529	7529		136.27	51.107	1	2680900			85540	3392	59583	59675	94918	94918		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_		VLM(1)TEDIKL		VLM(160)TEDIKL	0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2969970703125	2	539.29665	1076.57875	-1.3268	-0.00071556	1.7365	0.00093652	0.40972	0.00022096	539.2972620860268	65.772	1.1605	65.521	65.148	66.309	-0.25112					75	28	4	0	0	0	0.015901	2	7510	7510;7524		157.33	75.024	1	2257000			85541	3392	59583	59675	94919;94920	94919		128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_					0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.29665	1076.57875	-0.37369	-0.00020153	-0.019943	-1.0755E-05	-0.39363	-0.00021229	539.2965335843578	58.337	0.83883	58.16	57.795	58.634	-0.17775	0.042627	-0.00057254	NaN	176.09	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	946320			85542	3392	59583	59675				128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_					0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.29665	1076.57875	-0.97332	-0.00052491	0.21475	0.00011582	-0.75857	-0.00040909	539.2968606552638	60.395	1.6097	60.219	59.554	61.164	-0.1761	-0.019588	-9.6169E-05	NaN	176.09	73	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1173200			85543	3392	59583	59675				128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_					0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.29665	1076.57875	-0.33621	-0.00018132	0.22867	0.00012332	-0.10754	-5.7997E-05	539.2966108155806	58.287	0.74145	58.097	57.636	58.377	-0.19017	-0.019872	-0.00030439	NaN	176.09	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665560			85544	3392	59583	59675				128			0.04352116819973162
VLMTEDIKL	9	Oxidation (M)	_VLM(Oxidation (M))TEDIKL_					0	0	1		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.29665	1076.57875	-0.45765	-0.00024681	0.27956	0.00015076	-0.17809	-9.6043E-05	539.2968569410579	58.43	0.72964	58.188	57.772	58.502	-0.24165	0.070966	-0.0002495	NaN	176.09	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1225200			85545	3392	59583	59675				128			0.04352116819973162
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.2989501953125	2	531.299193	1060.58383	-0.40337	-0.00021431	-0.1788	-9.4999E-05	-0.58218	-0.00030931	531.2990483423647	65.476	1.1038	65.476	65.158	66.262	0					92	29	4	0	0	0	0.014454	6	7751	7741;7751;7763;7775;7787;7800		190.52	64.929	1	25357000			85546	3392	59583	59676	94921;94922;94923;94924;94925;94926	94922					0.05596420682581993
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.29833984375	2	531.299193	1060.58383	-0.39684	-0.00021084	-0.52483	-0.00027884	-0.92166	-0.00048968	531.2988856943937	65.861	0.99644	65.588	65.263	66.26	-0.27282					89	26	5	0	0	0	0.014454	6	7770	7761;7770;7781;7793;7805;7818		190.52	72.138	1	29340000			85547	3392	59583	59676	94927;94928;94929;94930;94931;94932	94928					0.05596420682581993
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.2991333007812	2	531.299193	1060.58383	-0.21296	-0.00011315	-0.47031	-0.00024987	-0.68327	-0.00036302	531.298896715699	65.539	0.98977	65.577	65.254	66.244	0.037384					88	26	5	0	0	0	0.013065	6	7669	7669;7679;7691;7703;7716;7730		200.16	61.412	1	32121000			85548	3392	59583	59676	94933;94934;94935;94936;94937;94938	94933					0.05596420682581993
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2939453125	2	531.299193	1060.58383	-0.3349	-0.00017793	0.51637	0.00027435	0.18148	9.6418E-05	531.2993668411399	65.804	0.93492	65.563	65.289	66.224	-0.24145					38	22	2	0	0	0	0.014918	3	7538	7515;7525;7538		190.52	69.897	1	3540600			85549	3392	59583	59676	94939;94940;94941	94941					0.05596420682581993
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2963256835938	2	531.299193	1060.58383	-1.4391	-0.00076459	1.7412	0.00092507	0.30205	0.00016048	531.2998807034949	65.788	1.0569	65.575	65.175	66.232	-0.21328					65	25	5	0	0	0	0.014918	3	7523	7514;7523;7534		162.25	59.479	1	3209200			85550	3392	59583	59676	94942;94943;94944	94943					0.05596420682581993
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;EIF4G1|p.S1311Lfs*30|1|0.06|ENSG00000114867|chr3:184327979-184327979|G/-|frameshift_variant;EIF4G1|p.M1355Ifs*36|1|0.1|ENSG00000114867|chr3:184328740-184328741|-/T|frameshift_variant	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2979125976562	2	531.299193	1060.58383	-0.56248	-0.00029884	0.57914	0.0003077	0.016667	8.855E-06	531.2994018919452	65.751	1.0385	65.499	65.27	66.309	-0.25112					40	25	2	0	0	0	0.013293	3	7504	7504;7516;7530		176.09	65.967	1	4328400			85551	3392	59583	59676	94945;94946;94947	94945					0.05596420682581993
VLMTFGRR	8	Unmodified	_VLMTFGRR_					0	0	0			REV__ENST00000467918.5_1_1:155213976-155214347:-|nuORF	REV__ENST00000467918.5_1_1:155213976-155214347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.33697509765625	2	490.278929	978.543305	-0.35403	-0.00017358	-4.24	-0.0020788	-4.594	-0.0022524	490.2766753273398	76.629	0.8391	76.361	76.048	76.887	-0.26806					47	19	4	0	0	0	0.027866	1	9074	9074		55.504	14.726	1	745380	+		85552	33088	59584	59677	94948	94948					0.05317543873491104
VLNAKLPLV	9	Unmodified	_VLNAKLPLV_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.78973388671875	2	483.820953	965.627353	-0.45237	-0.00021887	2.2133	0.0010709	1.761	0.00085198	483.82170730075006	45.832	0.14102	45.876	45.751	45.892	0.043877					5	3	2	0	0	0	0.024325	1	4415	4415		40.573	10.069	1	122590	+		85553	20082	59585	59678	94949	94949					0.143163982420333
VLNATESFV	9	Unmodified	_VLNATESFV_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2595520019531	2	490.258382	978.502212	-0.11017	-5.4014E-05	3.1041	0.0015218	2.9939	0.0014678	490.26074189152354	102.25	3.064	102.25	100.58	103.64	0.0073471					108	72	4	0	0	0	0.89441	1	13042	13042		32.812	2.3088	1	519180			85554	15514	59586	59679	94950	94950					0.012100613149982564
VLNATESFV	9	Unmodified	_VLNATESFV_					0	0	0		ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-3|IFI16;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	ENST00000493884.5_1_1:158984458-159022017:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.26123046875	2	490.258382	978.502212	0.70772	0.00034696	-1.3177	-0.00064602	-0.61	-0.00029906	490.2577815576486	105.47	1.6362	105.3	104.8	106.43	-0.16484					175	66	4	0	0	0	0.96322	1	13188	13188		27.882	1.0861	1	4976900			85555	15514	59586	59679	94951	94951					0.012100613149982564
VLNCAVPEIL	10	Unmodified	_VLNCAVPEIL_					0	0	0			REV__ENST00000581193.5_1_18:3277909-3278131:+|nuORF	REV__ENST00000581193.5_1_18:3277909-3278131:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7688598632812	2	535.79936	1069.58417	-0.26901	-0.00014413	-1.395	-0.00074743	-1.664	-0.00089156	535.7985338193013	87.005	0.33099	86.818	86.647	86.978	-0.18696					10	7	2	0	0	0	0.03519	1	10583	10583		32.812	7.3622	1	118040	+		85556	35529	59587	59680	94952	94952					0.05215840402433969
VLNCLVAIS	9	Unmodified	_VLNCLVAIS_					0	0	0			REV__nc|ENSG00000119787|Q8NHH9-3|ATL2	REV__nc|ENSG00000119787|Q8NHH9-3|ATL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.77734375	2	466.267696	930.520839	-0.81762	-0.00038123	-2.9621	-0.0013811	-3.7797	-0.0017624	466.266187869827	81.801	0.59738	81.659	81.399	81.997	-0.14248					22	13	2	0	0	0	0.024323	1	9855	9855		20.947	0	1	315670	+		85557	22490	59588	59681	94953	94953					0.05279899685194778
VLNEPLDL	8	Unmodified	_VLNEPLDL_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.76666259765625	2	456.755475	911.496398	-0.58268	-0.00026614	2.8953	0.0013224	2.3126	0.0010563	456.7566078006256	39.271	0.17892	39.295	39.206	39.385	0.023727					7	4	2	0	0	0	0.027866	1	3314	3314		25.45	0	1	68811	+		85558	27215	59589	59682	94954	94954					0.03710962803347684
VLNEPLDL	8	Unmodified	_VLNEPLDL_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.755475	911.496398	-0.46323	-0.00021158	9.6884	0.0044252	9.2252	0.0042137	456.76070658900124	39.596	0.23783	39.373	39.225	39.462	-0.22311	0.039127	0.0054947	NaN	30.504	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62566	+		85559	27215	59589	59682							0.03710962803347684
VLNEQVKEA	9	Unmodified	_VLNEQVKEA_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2822875976562	2	515.282389	1028.55022	-0.35565	-0.00018326	0.23672	0.00012198	-0.11893	-6.1281E-05	515.2822869084521	32.679	0.68209	32.742	32.465	33.147	0.062889					42	17	4	0	0	0	0.016249	1	2246	2246		155.58	37.774	1	1406400			85560	4651;16166	59590	59683	94955	94955					0.03709135235044414
VLNEQVKEA	9	Unmodified	_VLNEQVKEA_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	515.282389	1028.55022	0.020125	1.037E-05	0.45783	0.00023591	0.47796	0.00024628	515.2824914601777	33.081	0.40642	32.881	32.649	33.056	-0.20019	0.053586	-9.2928E-06	NaN	155.58	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242680			85561	4651;16166	59590	59683							0.03709135235044414
VLNEQVKEA	9	Unmodified	_VLNEQVKEA_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;nc|ENSG00000132780|P49321-2|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP;ENST00000527932.1_1_1:46080644-46081380:+|nuORF	nc|ENSG00000132780|P49321-4|NASP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	515.282389	1028.55022	-0.54625	-0.00028147	0.7531	0.00038806	0.20685	0.00010659	515.2826184403987	33.053	0.52085	32.887	32.556	33.077	-0.16565	0.059548	0.000295	NaN	155.58	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252170			85562	4651;16166	59590	59683							0.03709135235044414
VLNESGRIY	9	Unmodified	_VLNESGRIY_					0	0	0		ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	ENSG00000092295|ENST00000206765|TGM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7830810546875	2	525.782556	1049.55056	0.46431	0.00024412	-0.91098	-0.00047898	-0.44667	-0.00023485	525.7820983599777	49.833	1.0497	49.652	49.268	50.317	-0.18071					80	27	6	0	0	0	0.35646	3	5013	5002;5013;5025		68.787	4.1688	1	14979000			85563	1987	59591	59684	94956;94957;94958	94957					0.027765549549030766
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3190307617188	2	567.782556	1133.55056	-0.8566	-0.00048636	0.71836	0.00040787	-0.13824	-7.8489E-05	567.7826858153949	57.037	0.64404	57.037	56.778	57.422	0					48	17	4	0	0	0	0.024409	1	6413	6413		58.23	26.7	1	1828500			85564	1081	59592	59685	94959	94959					-0.01087445045095592
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3192749023438	2	567.782556	1133.55056	-0.044541	-2.529E-05	0.14694	8.3429E-05	0.1024	5.814E-05	567.7822890667899	57.184	0.72553	57.019	56.745	57.471	-0.16431					57	19	4	0	0	0	0.024017	1	6401	6401		75.043	20.321	1	1738300			85565	1081	59592	59685	94960	94960					-0.01087445045095592
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.7809448242188	2	567.782556	1133.55056	-0.45394	-0.00025774	0.19926	0.00011313	-0.25468	-0.0001446	567.7826580611834	57.174	0.97141	57.007	56.714	57.686	-0.1672					68	25	4	0	0	0	0.023452	3	6220	6220;6234;6247		146.79	56.009	1	6581300			85566	1081	59592	59685	94961;94962;94963	94961					-0.01087445045095592
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.7801513671875	2	567.782556	1133.55056	0.33175	0.00018836	-0.55821	-0.00031694	-0.22646	-0.00012858	567.7822612695875	57.199	1.0299	56.997	56.747	57.777	-0.20209					84	27	4	0	0	0	0.015512	3	6247	6223;6234;6247		159.28	77.035	1	6365100			85567	1081	59592	59685	94964;94965;94966	94966					-0.01087445045095592
VLNEYFHNV	9	Unmodified	_VLNEYFHNV_					0	0	0		nc|ENSG00000042753|P53680-2|AP2S1;ENSG00000042753|ENST00000263270|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	nc|ENSG00000042753|P53680-2|AP2S1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.780517578125	2	567.782556	1133.55056	-0.24482	-0.00013901	0.0043015	2.4423E-06	-0.24052	-0.00013656	567.7825364876774	57.243	1.0886	57.018	56.7	57.789	-0.2248					78	26	5	0	0	0	0.065	3	6222	6222;6233;6246		123.21	43.757	1	6222400			85568	1081	59592	59685	94967;94968;94969	94967					-0.01087445045095592
VLNFTCEPK	9	Unmodified	_VLNFTCEPK_					0	0	0		nc|ENSG00000124467|Q9UQ74-2|PSG8;nc|ENSG00000231924|P11464-3|PSG1;nc|ENSG00000124467|Q9UQ74-3|PSG8;ENSG00000231924|ENST00000436291|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000124467|ENST00000306511|PSG8;nc|ENSG00000231924|P11464-2|PSG1	nc|ENSG00000124467|Q9UQ74-2|PSG8	nc|ENSG00000124467|Q9UQ74-2|PSG8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.7662963867188	2	525.76806	1049.52157	0.20596	0.00010828	-4.3701	-0.0022976	-4.1641	-0.0021894	525.7656434585334	33.361	3.29	33.418	31.555	34.844	0.056572					208	84	3	0	0	0	0.39228	1	2358	2358		66.429	13.078	1	1622500			85569	4049	59593	59686	94970	94970					-0.001213056657661582
VLNHSAPTAVF	11	Unmodified	_VLNHSAPTAVF_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-3|C2CD3;REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.3069458007812	2	578.31148	1154.60841	0.22833	0.00013204	-2.0464	-0.0011834	-1.8181	-0.0010514	578.3101666613311	109.57	0.35733	109.42	109.29	109.65	-0.14889					32	17	2	0	0	0	1.0292	1	13472	13472		30.318	4.8675	1	1649300	+		85570	26215;36902	59594	59687	94971	94971					0.037288168803115695
VLNIPREKK	9	Unmodified	_VLNIPREKK_					0	0	0		ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	ANKRD36B|p.A481P|1|0.1|ENSG00000196912|chr2:97549455-97549455|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	549.2775268554688	2	548.84549	1095.67643	-0.67292	-0.00036933	4.1065	0.0022538	3.4336	0.0018845	548.8475856730337	34.833	0.35629	34.646	34.441	34.798	-0.18675					12	8	2	0	0	0	0.024541	1	2592	2592		10.866	0	1	81829			85571	97	59595	59688	94972	94972					0.1324168653097786
VLNKNDRV	8	Unmodified	_VLNKNDRV_					0	0	0			REV__ENST00000318782.8_1_16:3023261-3023465:+|nuORF	REV__ENST00000318782.8_1_16:3023261-3023465:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2782897949219	2	479.277441	956.540328	-0.71663	-0.00034346	3.8434	0.0018421	3.1268	0.0014986	479.2799764755381	80.941	2.5403	80.965	79.605	82.145	0.023911					119	61	4	0	0	0	1.0338	1	9968	9968		31.955	1.4512	1	1543800	+		85572	30313	59596	59689	94973	94973					0.06031992020314192
VLNKTTSEL	9	Unmodified	_VLNKTTSEL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;VPS13D|p.L4367Sfs*9|1|0.09|ENSG00000048707|chr1:12508955-12508955|C/-|frameshift_variant;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.S3164*|1|0.18|ENSG00000048707|chr1:12354032-12354033|TC/-|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.7871398925781	2	502.784764	1003.55498	0.23814	0.00011974	4.0148	0.0020186	4.253	0.0021383	502.7866401451937	87.485	0.61125	87.485	87.194	87.805	0					25	14	2	0	0	0	0.62163	1	11022	11022		51.335	1.3109	1	1485000			85573	1119	59597	59690	94974	94974					0.05334019377801269
VLNLIINNGN	10	Unmodified	_VLNLIINNGN_					0	0	0		ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	542.2783813476562	2	542.31148	1082.60841	-0.95053	-0.00051548	-3.7328	-0.0020243	-4.6833	-0.0025398	542.8111036378995	63.118	0.80206	62.879	62.654	63.457	-0.23926					30	20	2	0	0	0	0.03519	1	7418	7418		45.952	0	1	2597900			85574	10670	59598	59691	94975	94975					0.07040816880339662
VLNLWPQVI	9	Unmodified	_VLNLWPQVI_					0	0	0		ENST00000306026.5_1_3:49155182-49156625:-|nuORF;ENST00000417901.5_1_3:49155182-49156664:-|nuORF	ENST00000306026.5_1_3:49155182-49156625:-|nuORF	ENST00000306026.5_1_3:49155182-49156625:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.3221435546875	2	541.32386	1080.63317	-0.98464	-0.00053301	-3.802	-0.0020581	-4.7867	-0.0025911	541.3217675287749	60.274	2.0855	60.073	59.356	61.442	-0.2004					144	55	4	0	0	0	0.64155	1	6923	6923		50.025	4.0523	1	23185000			85575	11995	59599	59692	94976	94976					0.09607496753687883
VLNQIFEN	8	Unmodified	_VLNQIFEN_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7972106933594	2	488.758549	975.502546	-0.96681	-0.00047253	0.58832	0.00028755	-0.37849	-0.00018499	488.7586680912965	75.585	0.35654	75.585	75.413	75.769	0					13	9	2	0	0	0	0.027866	1	9287	9287		30.504	0	1	99226	+		85576	21424	59601	59693	94977	94977					0.013814810348549145
VLNRFKLPP	9	Unmodified	_VLNRFKLPP_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.3184204101562	2	542.337301	1082.66005	-1.0472	-0.00056796	-3.0955	-0.0016788	-4.1427	-0.0022467	542.335626892425	50.32	0.89761	50.32	49.878	50.775	0					63	26	4	0	0	0	0.024541	1	5205	5205		24.203	16.512	1	1015600			85577	7009	59602	59694	94978	94978					0.12202605364882402
VLNRFKLPP	9	Unmodified	_VLNRFKLPP_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	542.337301	1082.66005	-0.64578	-0.00035023	-3.278	-0.0017778	-3.9238	-0.002128	542.3354040607323	50.604	0.62962	50.455	50.162	50.792	-0.14916	0.10427	5.5341E-05	NaN	24.203	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970110			85578	7009	59602	59694							0.12202605364882402
VLNRFKLPP	9	Unmodified	_VLNRFKLPP_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	542.337301	1082.66005	-0.59203	-0.00032108	-3.6205	-0.0019636	-4.2126	-0.0022846	542.3352934553006	50.196	0.90131	50.277	49.775	50.676	0.080994	-0.073735	-0.00031621	NaN	24.203	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1020000			85579	7009	59602	59694							0.12202605364882402
VLNRQELF	8	Unmodified	_VLNRQELF_					0	0	0			REV__ENST00000591735.2_1_19:1491211-1495711:+|nuORF	REV__ENST00000591735.2_1_19:1491211-1495711:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.22509765625	2	509.787641	1017.56073	-0.14299	-7.2896E-05	-3.9049	-0.0019907	-4.0479	-0.0020636	509.78553954782467	19.256	0.64107	19.138	18.707	19.348	-0.11872					23	12	3	0	0	0	0.027866	1	341	341		31.955	0	1	66368	+		85580	22182	59603	59695	94979	94979					0.05265162680143476
VLNRRMAN	8	Unmodified	_VLNRRMAN_					0	0	0			REV__ENST00000552503.1_1_12:72668319-72697007:+|nuORF	REV__ENST00000552503.1_1_12:72668319-72697007:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2919616699219	2	487.271635	972.528718	-1.1408	-0.0005559	0.74804	0.0003645	-0.39281	-0.0001914	487.271902244572	93.831	0.60794	93.691	93.441	94.049	-0.13995					18	13	2	0	0	0	0.027866	1	11579	11579		26.796	0	1	49546	+		85581	34955	59604	59696	94980	94980					0.04135471725339812
VLNRYNEFM	9	Oxidation (M)	_VLNRYNEFM(Oxidation (M))_		VLNRYNEFM(1)		VLNRYNEFM(91)	0	0	1			REV__ENST00000608949.5_1_1:227751395-227838673:+|nuORF;REV__ENSG00000173041|ENST00000309683|ZNF680	REV__ENSG00000173041|ENST00000309683|ZNF680	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	601.24658203125	2	601.287148	1200.55974	-0.24583	-0.00014781	-1.9733	-0.0011865	-2.2191	-0.0013343	601.2859694077174	49.741	1.9905	49.636	48.95	50.94	-0.10558					70	52	2	0	0	0	0.023417	1	5070	5070		90.777	26.569	1	218760	+		85582	35975;26734	59605	59697	94981	94981		788			-0.03251419751109097
VLNSHEPL	8	Unmodified	_VLNSHEPL_					0	0	0		ENST00000555795.1_1_14:75988823-76013011:+|nuORF;ENSG00000156127|ENST00000286639|BATF	ENST00000555795.1_1_14:75988823-76013011:+|nuORF	ENST00000555795.1_1_14:75988823-76013011:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.7453918457031	2	454.745442	907.476331	1.1404	0.00051861	-1.516	-0.0006894	-0.37557	-0.00017079	454.74450919229935	98.106	1.4741	97.981	97.553	99.027	-0.12413					60	35	2	0	0	0	0.97924	1	12188	12188		40.573	1.7665	1	120330			85583	6515	59606	59698	94982	94982					0.01889211863363016
VLNSHEPL	8	Unmodified	_VLNSHEPL_					0	0	0		ENST00000555795.1_1_14:75988823-76013011:+|nuORF;ENSG00000156127|ENST00000286639|BATF	ENST00000555795.1_1_14:75988823-76013011:+|nuORF	ENST00000555795.1_1_14:75988823-76013011:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	454.745442	907.476331	0.92472	0.00042051	-1.1025	-0.00050137	-0.17781	-8.086E-05	454.74470574641884	98.068	1.428	97.932	97.469	98.897	-0.13625	-0.019442	-0.00011688	NaN	40.573	53	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155900			85584	6515	59606	59698							0.01889211863363016
VLNSLANVL	9	Unmodified	_VLNSLANVL_					0	0	0		ENSG00000242574|ENST00000418107|HLA-DMB;ENST00000498020.1_1_6:32906368-32908584:-|nuORF	ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.76165771484375	2	471.784567	941.554582	-0.0037281	-1.7588E-06	-0.27602	-0.00013022	-0.27975	-0.00013198	471.78433568543005	32.492	0.64184	32.492	32.149	32.79	0					34	16	3	0	0	0	0.024381	1	2298	2298		37.159	2.9866	1	907180			85585	10799	59607	59699	94983	94983					0.08146644448606821
VLNTGADVF	9	Unmodified	_VLNTGADVF_					0	0	0		nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341|ENST00000264233|POLQ	nc|ENSG00000051341|O75417-2|POLQ	nc|ENSG00000051341|O75417-2|POLQ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24468994140625	2	468.245275	934.475997	-0.11067	-5.1819E-05	-1.3018	-0.00060958	-1.4125	-0.0006614	468.2445766995356	100.87	1.8003	100.7	100.32	102.12	-0.17178					73	44	2	0	0	0	0.75397	1	12536	12536		42.396	3.59	1	336910			85586	1146	59608	59700	94984	94984					0.006137921435197313
VLNTGADVF	9	Unmodified	_VLNTGADVF_					0	0	0		nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341|ENST00000264233|POLQ	nc|ENSG00000051341|O75417-2|POLQ	nc|ENSG00000051341|O75417-2|POLQ	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	468.245275	934.475997	0.64251	0.00030085	-2.7666	-0.0012954	-2.1241	-0.00099459	468.24433668787503	100.83	1.938	100.69	100.13	102.07	-0.13364	0.018786	-0.0011514	NaN	42.396	90	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403970			85587	1146	59608	59700							0.006137921435197313
VLNVRRKPRLT	11	Unmodified	_VLNVRRKPRLT_					0	0	0		ENST00000380008.1_1_21:47251066-47256320:-|nuORF	ENST00000380008.1_1_21:47251066-47256320:-|nuORF	ENST00000380008.1_1_21:47251066-47256320:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7904052734375	3	451.293005	1350.85719	1.0777	0.00048634	-2.4509	-0.0011061	-1.3733	-0.00061975	451.2918465892427	20.081	0.92568	19.881	19.701	20.627	-0.2001					42	18	4	0	0	0	0.024735	1	509	509		27.644	0	1	298140			85588	13295	59609	59701	94985	94985					0.19579204907677195
VLNWLLSD	8	Unmodified	_VLNWLLSD_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2783203125	2	480.263468	958.512382	-0.68914	-0.00033097	4.471	0.0021472	3.7818	0.0018163	480.2655537801078	81.071	0.63871	80.94	80.619	81.258	-0.13075					27	15	2	0	0	0	0.027866	1	10093	10093		40.573	15.122	1	184820			85589	5928	59610	59702	94986	94986					0.031466690402339736
VLNWQAPL	8	Unmodified	_VLNWQAPL_					0	0	0			REV__nc|ENSG00000197375|O76082-3|SLC22A5	REV__nc|ENSG00000197375|O76082-3|SLC22A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.27911376953125	2	470.766178	939.517802	-0.2915	-0.00013723	0.97094	0.00045708	0.67943	0.00031985	470.76640758519085	75.813	0.6383	75.813	75.551	76.189	0					36	16	3	0	0	0	0.027866	1	9290	9290		52.299	9.8247	1	680980	+		85590	37061	59611	59703	94987	94987					0.04562392622688094
VLNYAPGPLD	10	Unmodified	_VLNYAPGPLD_					0	0	0		ENSG00000116096|ENST00000234454|SPR	ENSG00000116096|ENST00000234454|SPR	ENSG00000116096|ENST00000234454|SPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.7911376953125	2	529.779482	1057.54441	-0.30237	-0.00016019	-1.2435	-0.00065876	-1.5458	-0.00081894	529.7786679747132	104.68	0.59177	104.68	104.4	104.99	0.00096893					34	18	3	0	0	0	0.03519	1	13379	13379		44.117	0	1	114440			85591	3517	59612	59704	94988	94988					0.017940367233904908
VLNYFQPFL	9	Unmodified	_VLNYFQPFL_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.E4123K|1|0.44|ENSG00000198626|chr1:237784079-237784079|G/A|missense_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.8085327148438	2	570.808042	1139.60153	0.17838	0.00010182	-2.7693	-0.0015807	-2.5909	-0.0014789	570.8062420139803	74.289	0.88057	74.03	73.78	74.661	-0.25887					56	20	4	0	0	0	0.26797	1	9043	9043		79.939	11.152	1	3552700			85592	10159	59613	59705	94989	94989					0.03731503999756569
VLNYFQPFL	9	Unmodified	_VLNYFQPFL_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;RYR2|p.E4123K|1|0.44|ENSG00000198626|chr1:237784079-237784079|G/A|missense_variant	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	570.808042	1139.60153	0.12842	7.3303E-05	-2.1514	-0.001228	-2.0229	-0.0011547	570.8065865087192	74.215	0.41399	73.938	73.849	74.263	-0.2768	-0.044345	0.00022137	NaN	79.939	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635980			85593	10159	59613	59705							0.03731503999756569
VLNYVLIAL	9	Unmodified	_VLNYVLIAL_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.3244323730469	2	509.320786	1016.62702	-0.39813	-0.00020278	3.9654	0.0020197	3.5673	0.0018169	509.32286050156773	78.341	0.65765	78.341	78.042	78.7	0					44	15	4	0	0	0	0.36105	1	9731	9731		68.485	6.3773	1	3718500	+		85594	26531	59614	59706	94990	94990					0.11936978522169284
VLPCDRVL	8	Unmodified	_VLPCDRVL_					0	0	0			REV__ENST00000373202.7_1_10:72639920-72640070:+|nuORF	REV__ENST00000373202.7_1_10:72639920-72640070:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.750244140625	2	457.760038	913.505523	-0.4076	-0.00018658	3.9131	0.0017913	3.5055	0.0016047	457.76158386153656	29.453	0.27411	29.532	29.45	29.724	0.078344					11	6	2	0	0	0	0.027866	1	1766	1766		51.335	22.186	1	132440	+		85595	31242	59615	59707	94991	94991					0.04531032888007758
VLPCRPPGG	9	Unmodified	_VLPCRPPGG_					0	0	0		UNC5A|p.E174G|1|0.27|ENSG00000113763|chr5:176868645-176868645|A/G|missense_variant	UNC5A|p.E174G|1|0.27|ENSG00000113763|chr5:176868645-176868645|A/G|missense_variant	UNC5A|p.E174G|1|0.27|ENSG00000113763|chr5:176868645-176868645|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2588806152344	2	448.244555	894.474557	0.36287	0.00016266	-3.769	-0.0016894	-3.4061	-0.0015268	448.24202844001655	89.116	0.25008	89.132	88.965	89.215	0.015907					7	5	2	0	0	0	0.024293	1	11171	11171		18.324	0	1	56132			85596	38129	59616	59708	94992	94992					0.023098795737723776
VLPCRPPI	8	Unmodified	_VLPCRPPI_					0	0	0		NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant;nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	NRCAM|p.I903Dfs*20|2|0.24|ENSG00000091129|chr7:108180368-108180369|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2897644042969	2	447.765123	893.515694	0.020372	9.1218E-06	1.573	0.00070433	1.5934	0.00071346	447.767406820979	52.855	0.14893	52.949	52.866	53.015	0.094536					6	3	2	0	0	0	0.027866	1	5612	5612		35.201	10.998	1	32557			85597	1953	59617	59709	94993	94993					0.06467640613232106
VLPDLWDL	8	Unmodified	_VLPDLWDL_					0	0	0			REV__ENST00000225964.9_1_17:48265286-48266811:-|nuORF	REV__ENST00000225964.9_1_17:48265286-48266811:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.765625	2	485.765843	969.517133	-0.18025	-8.7557E-05	1.8618	0.00090442	1.6816	0.00081686	485.765883638505	101.75	2.1296	101.76	100.58	102.71	0.0073471					64	49	2	0	0	0	0.96719	1	12999	12999		42.474	0	1	326100	+		85598	29378	59618	59710	94994	94994					0.031155531829995198
VLPERLKKIF	10	Unmodified	_VLPERLKKIF_					0	0	0			REV__ENST00000524333.5_1_8:95877920-95879436:+|nuORF	REV__ENST00000524333.5_1_8:95877920-95879436:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.9017333984375	2	621.900266	1241.78598	-1.8282	-0.001137	2.8398	0.0017661	1.0115	0.00062907	621.901779649968	105.46	0.42779	105.33	105.07	105.5	-0.13099					28	11	3	0	0	0	1.1112	1	13131	13131		16.473	0.83134	1	1094000	+		85599	25822	59619	59711	94995	94995					0.1747569215031035
VLPFGLTP	8	Unmodified	_VLPFGLTP_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	422.25372314453125	2	422.252372	842.49019	-0.093892	-3.9646E-05	0.40547	0.00017121	0.31158	0.00013156	422.25242197534305	81.273	1.0092	81.131	80.858	81.868	-0.14249					41	23	3	0	0	0	0.97924	1	9760	9760		40.573	7.057	1	483050			85600	4533	59620	59712	94996	94996					0.06264489362456516
VLPFGLTP	8	Unmodified	_VLPFGLTP_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	422.252372	842.49019	0.3548	0.00014981	0.018701	7.8965E-06	0.3735	0.00015771	422.2523025104356	81.373	0.74586	81.144	80.776	81.522	-0.2289	0.0050325	-6.6636E-05	NaN	40.573	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178180			85601	4533	59620	59712							0.06264489362456516
VLPFGLTP	8	Unmodified	_VLPFGLTP_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	422.252372	842.49019	0.37715	0.00015925	-0.15952	-6.7356E-05	0.21763	9.1895E-05	422.2521959477659	81.335	0.83391	81.142	80.8	81.634	-0.19334	0.0028375	-0.00021714	NaN	40.573	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336600			85602	4533	59620	59712							0.06264489362456516
VLPGDRVLL	9	Unmodified	_VLPGDRVLL_					0	0	0		ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3	ENSG00000205517|ENST00000380456|RGL3	ENSG00000205517|ENST00000380456|RGL3	MSMS	OPSCC_39_ClassI_Rep-2	2	491.3009948730469	2	491.30821	980.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.628	1	59.428	58.928	59.928	-0.20016								0	0	0	0.5395	1	6786	6786		47.657	8.4045	1				85603	10432	59621	59713	94997	94997					0.11078923719617251
VLPGGNLGAQ	10	Unmodified	_VLPGGNLGAQ_					0	0	0		ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000547655.1_1_12:49989013-49989364:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF;ENSG00000116288|ENST00000338639|PARK7	ENST00000460192.5_1_1:8025453-8031070:+|nuORF	ENST00000460192.5_1_1:8025453-8031070:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2691955566406	2	463.258717	924.50288	-0.91202	-0.0004225	1.7328	0.00080272	0.82075	0.00038022	463.2591549241143	46.25	1.4204	46.099	45.48	46.9	-0.15157					72	39	3	0	0	0	0.03519	1	4443	4443		23.042	0	1	351480			85604	3544	59622	59714	94998	94998					0.03760900754718932
VLPGHFNT	8	Unmodified	_VLPGHFNT_					0	0	0		ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.7348937988281	2	442.734877	883.455202	0.051575	2.2834E-05	0.025669	1.1365E-05	0.077244	3.4199E-05	442.734834374609	23.462	1.2635	23.26	22.967	24.231	-0.20193					77	28	4	0	0	0	0.88442	1	955	955		52.299	0	1	4046600			85605	8608	59623	59715	94999	94999					0.008812465545133819
VLPGHFNT	8	Unmodified	_VLPGHFNT_					0	0	0		ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.7349853515625	2	442.734877	883.455202	-0.36527	-0.00016172	0.34365	0.00015214	-0.021621	-9.5726E-06	442.73503775671423	23.477	1.4062	23.297	22.929	24.335	-0.17989					73	32	3	0	0	0	0.88442	1	934	934		52.299	0	1	7343900			85606	8608	59623	59715	95000	95000					0.008812465545133819
VLPGVTLIG	9	Unmodified	_VLPGVTLIG_					0	0	0			REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.7799072265625	2	434.778754	867.542954	0.074719	3.2486E-05	3.0656	0.0013329	3.1403	0.0013654	434.77992067571773	38.391	0.75215	38.173	37.957	38.71	-0.21849					69	20	4	0	0	0	0.97516	1	3162	3162		25.45	0	1	5000400	+		85607	34974	59624	59716	95001	95001					0.10388447425305003
VLPIIDRCCFN	11	Unmodified	_VLPIIDRCCFN_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	646.3656005859375	2	646.828126	1291.6417	0.032442	2.0984E-05	-1.82	-0.0011772	-1.7876	-0.0011563	646.8269692481789	46.324	0.45867	46.062	45.854	46.313	-0.26118					24	11	3	0	0	0	0.024762	1	4469	4469		30.318	0	1	369490	+		85608	20389	59625	59717	95002	95002					0.007543593363607215
VLPITGFEG	9	Unmodified	_VLPITGFEG_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.2576599121094	2	466.758018	931.501483	0.34463	0.00016086	4.4217	0.0020639	4.7663	0.0022247	466.7601053830869	73.769	0.32317	73.779	73.558	73.881	0.0096512					12	7	2	0	0	0	0.024466	1	8922	8922		18.324	0	1	944440	+		85609	22056	59626	59718	95003	95003					0.03299266665965206
VLPKSRVE	8	Unmodified	_VLPKSRVE_					0	0	0		ENST00000485901.1_1_6:32974995-32975826:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974995-32975826:-|nuORF	ENST00000485901.1_1_6:32974995-32975826:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.8130187988281	2	464.284734	926.554916	-0.83781	-0.00038898	-1.4518	-0.00067403	-2.2896	-0.001063	464.28392391724	38.071	0.17974	37.85	37.686	37.866	-0.22149					6	4	2	0	0	0	0.027866	1	3106	3106		31.955	0	1	73554			85610	10316	59627	59719	95004	95004					0.08870064168468161
VLPLDRPVP	9	Unmodified	_VLPLDRPVP_					0	0	0		ENSG00000205268|ENST00000401827|PDE7A;nc|ENSG00000205268|Q13946-3|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.78173828125	2	503.30821	1004.60187	-0.30334	-0.00015268	-0.5651	-0.00028442	-0.86845	-0.0004371	503.30813792928456	47.4	0.53625	47.4	47.181	47.717	0					41	15	4	0	0	0	0.024405	1	4754	4754		35.618	12.576	1	1280900			85611	10411	59628	59720	95005	95005					0.09974923719607887
VLPLGVEDTV	10	Unmodified	_VLPLGVEDTV_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.7774658203125	2	521.294965	1040.57538	-1.2661	-0.00066002	4.4511	0.0023203	3.185	0.0016603	521.2975192276408	28.123	0.31192	28.123	27.963	28.274	0					12	7	2	0	0	0	0.03519	1	1593	1593		29.15	8.2026	1	44394			85612	2047	59629	59721	95006	95006					0.05671190037605811
VLPLSKPLC	9	Unmodified	_VLPLSKPLC_					0	0	0			REV__ENST00000490199.2_1_9:35829798-35841141:+|nuORF	REV__ENST00000490199.2_1_9:35829798-35841141:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7768249511719	2	485.293714	968.572874	-0.6489	-0.00031491	3.2631	0.0015835	2.6142	0.0012686	485.2955322583734	29.527	1.1973	29.53	28.839	30.036	0.0031357					68	29	5	0	0	0	0.024487	1	1849	1849		24.203	0	1	3417700	+		85613	23728	59630	59722	95007	95007					0.08733063098964067
VLPNSPPYF	9	Unmodified	_VLPNSPPYF_					0	0	0		ENST00000498029.1_1_X:153648339-153649340:+|nuORF;nc|ENSG00000102125|Q16635-9|TAFAZZIN;nc|ENSG00000102125|Q16635-8|TAFAZZIN;nc|ENSG00000102125|Q16635-7|TAFAZZIN;nc|ENSG00000102125|Q16635-6|TAFAZZIN;nc|ENSG00000102125|Q16635|TAFAZZIN;nc|ENSG00000102125|Q16635-4|TAFAZZIN;nc|ENSG00000102125|Q16635-2|TAFAZZIN;nc|ENSG00000102125|Q16635-5|TAFAZZIN;ENSG00000102125|ENST00000601016|TAFAZZIN	ENST00000498029.1_1_X:153648339-153649340:+|nuORF	ENST00000498029.1_1_X:153648339-153649340:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2723999023438	2	517.271293	1032.52803	0.67173	0.00034746	2.8565	0.0014776	3.5282	0.001825	517.2725746100771	71.015	1.1293	70.8	70.52	71.65	-0.21424					57	26	3	0	0	0	0.27161	1	8291	8291		79.451	2.6769	1	4508600			85614	2383	59631	59723	95008	95008					0.0130695555726561
VLPPAKGR	8	Unmodified	_VLPPAKGR_					0	0	0		ENST00000497030.5_1_1:65613330-65614002:+|nuORF	ENST00000497030.5_1_1:65613330-65614002:+|nuORF	ENST00000497030.5_1_1:65613330-65614002:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	418.7530212402344	2	419.268887	836.523222	-0.36492	-0.000153	0.41216	0.0001728	0.047231	1.9803E-05	419.26901404078035	45.389	0.54638	45.29	45.048	45.594	-0.099445					26	15	2	0	0	0	0.027866	1	4338	4338		24.203	10.427	1	161120			85615	15581	59632	59724	95009	95009					0.09842116205186358
VLPPEMSAR	9	Unmodified	_VLPPEMSAR_					0	0	0			REV__ENST00000566699.1_1_7:139877376-139877601:+|nuORF	REV__ENST00000566699.1_1_7:139877376-139877601:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.7427978515625	2	500.268227	998.521901	-0.076376	-3.8209E-05	-1.4589	-0.00072983	-1.5352	-0.00076803	500.26768902859084	56.765	0.66765	56.541	56.109	56.776	-0.2248					22	16	2	0	0	0	0.024457	1	6178	6178		21.96	0	1	113820	+		85616	35307	59633	59725	95010	95010					0.02258114054109228
VLPPEMSAR	9	Unmodified	_VLPPEMSAR_					0	0	0			REV__ENST00000566699.1_1_7:139877376-139877601:+|nuORF	REV__ENST00000566699.1_1_7:139877376-139877601:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	500.268227	998.521901	-0.25283	-0.00012649	-1.2468	-0.00062374	-1.4996	-0.00075023	500.7691226598151	56.982	0.23116	56.818	56.71	56.941	-0.16431	0.13061	0.00050854	NaN	21.96	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247680	+		85617	35307	59633	59725							0.02258114054109228
VLPPGTEGDI	10	Unmodified	_VLPPGTEGDI_					0	0	0		ENSG00000183747|ENST00000573854|ACSM2A;ENSG00000066813|ENST00000329697|ACSM2B	ENSG00000183747|ENST00000573854|ACSM2A	ENSG00000183747|ENST00000573854|ACSM2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.7900390625	2	499.263665	996.512776	0.6592	0.00032911	-0.57595	-0.00028755	0.083248	4.1563E-05	499.26336149920525	70.108	0.40929	69.815	69.551	69.96	-0.29291					14	9	2	0	0	0	0.03519	1	8448	8448		53.351	9.2347	1	114930			85618	1345	59634	59726	95011	95011					0.014380439694264169
VLPPLLLLLLL	11	Unmodified	_VLPPLLLLLLL_					0	0	0			REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MSMS	OPSCC_39_ClassI_Rep-1	1	406.2940979003906	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.88	1	111.88	111.38	112.38	0								0	0	0	1.8223	1	14112	14112		0.37141	0	1		+		85619	29249	59635	59727	95012	95012					0.2577239213514986
VLPPLLLLLLL	11	Unmodified	_VLPPLLLLLLL_					0	0	0			REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	REV__nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MSMS	OPSCC_39_ClassI_Rep-3	3	406.29449462890625	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.6	1	112.61	112.11	113.11	0.0084457								0	0	0	1.7978	1	14037	14037		1.523	0	1		+		85620	29249	59635	59727	95013	95013					0.2577239213514986
VLPPLSPK	8	Unmodified	_VLPPLSPK_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.K1521Rfs*3|1|0.09|ENSG00000157423|chr16:70978989-70978990|TT/-|frameshift_variant;nc|ENSG00000157423|Q4G0P3-5|HYDIN;nc|ENSG00000157423|Q4G0P3-6|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN;HYDIN|p.C113Vfs*8|1|0.1|ENSG00000157423|chr16:71178973-71178973|G/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.57928466796875	2	425.773471	849.53239	0.27162	0.00011565	3.8018	0.0016187	4.0734	0.0017344	425.7748119484665	36.567	0.63898	36.35	36.05	36.689	-0.21661					24	15	2	0	0	0	0.027866	1	2826	2826		4.3163	0	1	92782			85621	6595	59636	59728	95014	95014					0.10160464770854105
VLPPPAPSVDV	11	Unmodified	_VLPPPAPSVDV_					0	0	0		ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	ENSG00000161681|ENST00000293441|SHANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.8121337890625	2	545.810782	1089.60701	-0.37303	-0.00020361	1.0814	0.00059025	0.70839	0.00038665	545.8117218925679	91.512	1.7794	91.523	91.237	93.017	0.011276					99	42	5	0	0	0	0.95124	1	11551	11551		47.657	4.7931	1	4663500			85622	6889	59637	59729	95015	95015					0.0657918279155183
VLPPPYLL	8	Unmodified	_VLPPPYLL_					0	0	0		ENST00000377792.3_2_9:37486484-37486616:+|nuORF	ENST00000377792.3_2_9:37486484-37486616:+|nuORF	ENST00000377792.3_2_9:37486484-37486616:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.25830078125	2	456.283672	910.552791	-0.0070913	-3.2357E-06	2.4915	0.0011368	2.4844	0.0011336	456.28453451858786	32.36	0.19462	32.36	32.224	32.418	0					6	4	2	0	0	0	0.027866	1	2237	2237		67.327	23.701	1	85240			85623	13215	59638	59730	95016	95016					0.09393635430660652
VLPPPYLL	8	Unmodified	_VLPPPYLL_					0	0	0		ENST00000377792.3_2_9:37486484-37486616:+|nuORF	ENST00000377792.3_2_9:37486484-37486616:+|nuORF	ENST00000377792.3_2_9:37486484-37486616:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.283672	910.552791	-0.30086	-0.00013728	4.6511	0.0021222	4.3502	0.0019849	456.28728956841394	32.127	0.21297	31.969	31.778	31.991	-0.15772	-0.19549	0.0005494	NaN	67.327	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12526			85624	13215	59638	59730							0.09393635430660652
VLPQATLTV	9	Unmodified	_VLPQATLTV_					0	0	0			REV__ENST00000438047.1_1_7:157655587-157655827:+|nuORF	REV__ENST00000438047.1_1_7:157655587-157655827:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.30303955078125	2	471.286943	940.559333	0.48222	0.00022726	-0.33255	-0.00015673	0.14967	7.0537E-05	471.286423376205	67.376	0.74321	67.376	67.165	67.908	0					24	18	2	0	0	0	0.024541	1	8035	8035		12.959	0	1	210670	+		85625	32488	59639	59731	95017	95017					0.08667528591365681
VLPQEAEEE	9	Unmodified	_VLPQEAEEE_					0	0	0		ENSG00000131748|ENST00000336308|STARD3;nc|ENSG00000131748|Q14849-2|STARD3;ENST00000484773.6_1_17:37809763-37814894:+|nuORF;ENST00000544210.6_1_17:37814089-37815307:+|nuORF;nc|ENSG00000010270|O95772-2|STARD3NL;ENSG00000010270|ENST00000009041|STARD3NL;ENST00000488876.5_1_17:37814522-37819158:+|nuORF;ENST00000583582.5_1_17:37814522-37814894:+|nuORF	ENSG00000131748|ENST00000336308|STARD3;ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENSG00000131748|ENST00000336308|STARD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.2504272460938	2	522.248212	1042.48187	-0.019448	-1.0157E-05	-3.462	-0.001808	-3.4814	-0.0018182	522.245660843966	72.091	0.70043	71.886	71.498	72.198	-0.20541					47	16	4	0	0	0	0.024523	1	8398	8398		29.15	13.508	1	145090			85626	4547;15395	59640	59732	95018	95018					-0.037671541354711735
VLPQPSENQ	9	Unmodified	_VLPQPSENQ_					0	0	0			REV__nc|ENSG00000007171|P35228-2|NOS2	REV__nc|ENSG00000007171|P35228-2|NOS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.323486328125	2	506.258914	1010.50327	-0.62828	-0.00031807	-0.30081	-0.00015229	-0.9291	-0.00047036	506.25844533849505	38.804	0.75912	38.705	38.475	39.234	-0.098755					46	20	3	0	0	0	0.024374	1	3297	3297		40.778	0	1	357380	+		85627	19854	59641	59733	95019	95019					-0.0015572431609598425
VLPRGNVK	8	Unmodified	_VLPRGNVK_					0	0	0			REV__ENSG00000170801|ENST00000307358|HTRA3	REV__ENSG00000170801|ENST00000307358|HTRA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.756591796875	2	441.779619	881.544686	-0.68992	-0.00030479	0.82683	0.00036528	0.13691	6.0486E-05	441.77987436272605	21.304	0.48968	21.304	21.048	21.537	0					16	9	2	0	0	0	0.027866	1	621	621		11.511	0	1	23567	+		85628	26506	59642	59734	95020	95020					0.09917501233894654
VLPSTFFL	8	Unmodified	_VLPSTFFL_					0	0	0			REV__ENST00000511398.1_1_4:54374388-54374445:-|nuORF	REV__ENST00000511398.1_1_4:54374388-54374445:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.8104553222656	2	462.265479	922.516405	-0.24209	-0.00011191	-3.9109	-0.0018079	-4.153	-0.0019198	462.2635075749737	68.62	0.83654	68.62	68.295	69.131	0					56	21	4	0	0	0	0.027866	1	8276	8276		29.842	0	1	2457700	+		85629	34121	59643	59735	95021	95021					0.052047585339551006
VLPTSQRP	8	Unmodified	_VLPTSQRP_					0	0	0		ENST00000334530.9_2_8:21998982-21999198:-|nuORF	ENST00000334530.9_2_8:21998982-21999198:-|nuORF	ENST00000334530.9_2_8:21998982-21999198:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2438049316406	2	449.261259	896.507966	-0.34671	-0.00015576	0.52047	0.00023383	0.17376	7.8065E-05	449.2613411260057	31.304	0.82402	31.119	30.576	31.4	-0.18503					39	20	2	0	0	0	0.027866	1	2027	2027		47.916	14.4	1	1452200			85630	12386	59644	59736	95022	95022					0.05557204617332445
VLPVYGGPKGL	11	Unmodified	_VLPVYGGPKGL_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.3258056640625	2	550.329142	1098.64373	-0.021848	-1.2023E-05	-2.7261	-0.0015002	-2.7479	-0.0015123	550.3277998075141	98.945	1.0124	98.945	98.479	99.492	0					46	22	3	0	0	0	1.0054	1	12659	12659		35.618	1.4457	1	260500			85631	10490	59645	59737	95023	95023					0.09835479408138781
VLQAEMDCEL	10	Unmodified	_VLQAEMDCEL_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.76123046875	2	575.759575	1149.5046	2.5003	0.0014396	0.85763	0.00049379	3.3579	0.0019334	575.7599587348586	16.939	0.66926	16.939	16.78	17.449	0					36	15	4	0	0	0	1.1197	1	126	126		20.947	0.95016	1	571000			85632	5541	59646	59738	95024	95024					-0.06417594333856869
VLQATWGIY	9	Unmodified	_VLQATWGIY_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7825317382812	2	525.784567	1049.55458	-0.016827	-8.8472E-06	-4.1999	-0.0022082	-4.2167	-0.0022171	525.7824062473394	49.726	1.0136	49.621	49.259	50.273	-0.10558					90	26	6	0	0	0	0.67308	2	5014	4992;5014		47.916	1.8352	1	15556000			85633	952	59647	59739	95025;95026	95026					0.031786444485987886
VLQATWGIY	9	Unmodified	_VLQATWGIY_					0	0	0		ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	ENSG00000019995|ENST00000359653|ZRANB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7824096679688	2	525.784567	1049.55458	-0.067203	-3.5334E-05	-4.2166	-0.002217	-4.2838	-0.0022524	525.7823705063088	49.99	1.1902	49.71	49.359	50.549	-0.27977					84	31	6	0	0	0	0.67308	1	5068	5068		47.916	1.9636	1	15789000			85634	952	59647	59739	95027	95027					0.031786444485987886
VLQAVAEKV	9	Unmodified	_VLQAVAEKV_					0	0	0		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	478.7924499511719	2	478.792392	955.570232	-0.63496	-0.00030401	1.024	0.0004903	0.38908	0.00018629	478.79267138806694	45.797	0.57201	45.594	45.358	45.93	-0.20226					38	15	4	0	0	0	0.17845	2	4368	4368;4381		93.143	10.838	1	2250200			85635	4484	59648	59740	95028;95029	95028					0.09066930965650499
VLQCLKTKI	9	Unmodified	_VLQCLKTKI_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.322998046875	2	523.325545	1044.63654	-0.84744	-0.00044349	-3.24	-0.0016956	-4.0874	-0.0021391	523.3237443108741	67.129	1.6087	67.129	66.798	68.407	0					101	40	5	0	0	0	0.35646	1	8028	8028		68.787	6.6794	1	10719000	+		85636	28219	59649	59741	95030	95030					0.11600423536060589
VLQDIQVML	9	Oxidation (M)	_VLQDIQVM(Oxidation (M))L_		VLQDIQVM(1)L		VLQDIQVM(190)L	0	0	1		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7958984375	2	537.796817	1073.57908	-1.2392	-0.00066642	2.6494	0.0014248	1.4102	0.00075842	537.7971756048902	75.703	1.5678	75.703	75.232	76.799	0					121	37	5	0	0	0	0.015064	3	9298	9298;9324;9336		190.52	32.443	1	11340000			85637	2171	59650	59742	95031;95032;95033	95031		81			0.04523536539818451
VLQDIQVML	9	Oxidation (M)	_VLQDIQVM(Oxidation (M))L_		VLQDIQVM(1)L		VLQDIQVM(180)L	0	0	1		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7968139648438	2	537.796817	1073.57908	-0.90829	-0.00048848	2.1436	0.0011528	1.2353	0.00066436	537.7969692633176	75.927	1.498	75.682	75.339	76.837	-0.24455					123	38	5	0	0	0	0.013293	5	9321	9287;9298;9310;9321;9334		221.33	66.608	1	12637000			85638	2171	59650	59742	95034;95035;95036;95037;95038	95037		81			0.04523536539818451
VLQDIQVML	9	Oxidation (M)	_VLQDIQVM(Oxidation (M))L_		VLQDIQVM(1)L		VLQDIQVM(160)L	0	0	1		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7968139648438	2	537.796817	1073.57908	-0.34757	-0.00018692	1.8102	0.00097354	1.4627	0.00078662	537.7967378860309	75.724	1.3803	75.736	75.436	76.816	0.011635					109	35	5	0	0	0	0.014918	3	9246	9222;9234;9246		190.52	50.547	1	12487000			85639	2171	59650	59742	95039;95040;95041	95041		81			0.04523536539818451
VLQDIQVML	9	Oxidation (M)	_VLQDIQVM(Oxidation (M))L_		VLQDIQVM(1)L		VLQDIQVM(65)L	0	0	1		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7970581054688	2	537.796817	1073.57908	-0.90747	-0.00048803	1.0783	0.00057992	0.17086	9.1886E-05	537.7972456256986	77.675	3.3997	77.691	76.575	79.974	0.015907					185	81	3	0	0	0	0.40693	1	9535	9535		65.465	9.0316	1	2174400			85640	2171	59650	59742	95042	95042		81			0.04523536539818451
VLQDIQVML	9	Unmodified	_VLQDIQVML_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7997436523438	2	529.79936	1057.58417	-1.2974	-0.00068734	1.5121	0.00080111	0.21475	0.00011377	529.8000147897122	83.414	1.6144	83.414	83.095	84.709	0					97	37	4	0	0	0	0.094442	1	10442	10442		112.41	16.22	1	5561600			85641	2171	59650	59743	95043	95043					0.057678404024500196
VLQDIQVML	9	Unmodified	_VLQDIQVML_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.7988891601562	2	529.79936	1057.58417	-0.43782	-0.00023195	0.23111	0.00012244	-0.20671	-0.00010951	529.799341014226	83.51	2.1514	83.419	83.043	85.195	-0.090454					87	50	3	0	0	0	0.020687	4	10413	10392;10401;10413;10426		148.99	25.548	1	5755700			85642	2171	59650	59743	95044;95045;95046;95047	95046					0.057678404024500196
VLQDIQVML	9	Unmodified	_VLQDIQVML_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.799560546875	2	529.79936	1057.58417	-0.86681	-0.00045924	0.81374	0.00043112	-0.053073	-2.8118E-05	529.799589946442	83.416	1.702	83.442	83.046	84.748	0.02655					102	39	4	0	0	0	0.03666	3	10343	10332;10343;10366		136.27	31.522	1	5869600			85643	2171	59650	59743	95048;95049;95050	95049					0.057678404024500196
VLQDIQVML	9	Unmodified	_VLQDIQVML_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7991943359375	2	529.79936	1057.58417	0.47842	0.00025346	-0.33165	-0.00017571	0.14676	7.7755E-05	529.7989328546739	83.501	1.0235	83.289	82.919	83.943	-0.21159					49	23	3	0	0	0	0.45795	1	10058	10058		62.107	7.3311	1	1102200			85644	2171	59650	59743	95051	95051					0.057678404024500196
VLQDIQVML	9	Unmodified	_VLQDIQVML_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7990112304688	2	529.79936	1057.58417	0.095908	5.0812E-05	0.057418	3.042E-05	0.15333	8.1232E-05	529.799066088616	83.442	1.0167	83.273	82.905	83.922	-0.16915					57	23	4	0	0	0	0.39228	1	10073	10073		66.429	5.4573	1	1201400			85645	2171	59650	59743	95052	95052					0.057678404024500196
VLQDIQVML	9	Unmodified	_VLQDIQVML_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7991943359375	2	529.79936	1057.58417	0.10661	5.6482E-05	0.017475	9.2583E-06	0.12409	6.5741E-05	529.799093203696	83.445	1.1538	83.306	82.91	84.063	-0.13861					50	26	3	0	0	0	0.28753	1	10052	10052		77.318	20.597	1	1150600			85646	2171	59650	59743	95053	95053					0.057678404024500196
VLQDMARVSYT	11	Unmodified	_VLQDMARVSYT_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.2196044921875	3	428.220184	1281.63872	0.19369	8.294E-05	-2.0852	-0.00089292	-1.8915	-0.00080998	428.21931550063135	27.637	1.4544	27.395	26.911	28.366	-0.24217					81	34	5	0	0	0	1.0501	1	1530	1530		25.068	1.6899	1	2506600	+		85647	24719	59651	59744	95054	95054					0.00916807483190496
VLQDVGGKII	10	Unmodified	_VLQDVGGKII_					0	0	0		ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.318115234375	2	521.318774	1040.623	-0.022624	-1.1794E-05	-0.68726	-0.00035828	-0.70989	-0.00037008	521.3183377873627	60.051	0.72767	60.051	59.745	60.473	0					64	19	4	0	0	0	0.66532	1	6885	6885		69.628	5.4204	1	3638700			85648	10501	59652	59745	95055	95055					0.10430889028475576
VLQEMRDL	8	Unmodified	_VLQEMRDL_					0	0	0		nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENSG00000241839|ENST00000323544|PLEKHO2	nc|ENSG00000241839|Q8TD55-2|PLEKHO2	nc|ENSG00000241839|Q8TD55-2|PLEKHO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.77984619140625	2	502.265684	1002.51682	-0.82033	-0.00041202	-2.2251	-0.0011176	-3.0454	-0.0015296	502.2659447330488	53.469	0.5798	53.322	53.168	53.748	-0.14724					20	15	2	0	0	0	0.027866	1	5781	5781		68.485	10.673	1	122450			85649	10785	59653	59746	95056	95056					0.015658101914937106
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.266357421875	2	442.26601	882.517468	0.1286	5.6873E-05	0.15604	6.9012E-05	0.28464	0.00012589	442.26589517911003	60.237	0.52104	60.237	59.88	60.401	0					46	13	5	0	0	0	0.021872	2	6920	6910;6920		148.04	36.395	1	3307800			85650	5888	59654	59747	95057;95058	95058					0.07150972902843478
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2664489746094	2	442.26601	882.517468	-0.28194	-0.00012469	0.50299	0.00022246	0.22105	9.7763E-05	442.2660839392333	60.468	0.56842	60.255	59.852	60.421	-0.21339					48	14	5	0	0	0	0.047345	2	6912	6912;6925		129.68	41.928	1	3237500			85651	5888	59654	59747	95059;95060	95059					0.07150972902843478
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2663269042969	2	442.26601	882.517468	-1.4467	-0.00063982	1.678	0.00074212	0.2313	0.0001023	442.26660041069727	60.147	0.52953	60.226	59.863	60.392	0.078888					46	13	5	0	0	0	0.015925	1	6827	6827		157.21	32.614	1	3018000			85652	5888	59654	59747	95061	95061					0.07150972902843478
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.2665100097656	2	442.26601	882.517468	-0.4284	-0.00018947	0.77011	0.00034059	0.34171	0.00015113	442.26616651356187	60.487	0.90608	60.281	59.866	60.772	-0.20599					58	22	4	0	0	0	0.072054	2	6738	6729;6738		120.62	38.316	1	1709900			85653	5888	59654	59747	95062;95063	95063					0.07150972902843478
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	442.2663879394531	2	442.26601	882.517468	-0.8613	-0.00038093	1.0813	0.00047823	0.22002	9.7308E-05	442.2663339548586	60.488	0.90774	60.312	59.885	60.793	-0.1761					51	22	3	0	0	0	0.17455	2	6745	6731;6745		94.006	16.522	1	1700100			85654	5888	59654	59747	95064;95065	95065					0.07150972902843478
VLQGAVPTV	9	Unmodified	_VLQGAVPTV_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	442.2660217285156	2	442.26601	882.517468	-0.26751	-0.00011831	0.48978	0.00021661	0.22227	9.8301E-05	442.2660627596861	60.613	1.0676	60.36	59.904	60.971	-0.25373					59	26	3	0	0	0	0.27161	2	6738	6729;6738		79.451	12.066	1	1554700			85655	5888	59654	59747	95066;95067	95067					0.07150972902843478
VLQGEEPIEI	10	Unmodified	_VLQGEEPIEI_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.8027954101562	2	563.803154	1125.59175	0.46106	0.00025995	-3.6393	-0.0020518	-3.1782	-0.0017919	563.8021598808236	107.45	0.39825	107.29	106.9	107.3	-0.15771					22	14	2	0	0	0	0.98754	1	13336	13336		47.657	4.7931	1	97033			85656	8096	59655	59748	95068	95068					0.03398271203695913
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7921142578125	2	478.792392	955.570232	0.41381	0.00019813	-0.43949	-0.00021043	-0.02568	-1.2296E-05	478.792014920724	45.655	1.0713	45.655	45.375	46.447	0					75	30	4	0	0	0	0.043667	4	4455	4445;4455;4467;4479		131.03	22.944	1	6167300			85657	4256;18250	59656	59749	95069;95070;95071;95072	95070					0.09066930965650499
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.79266357421875	2	478.792392	955.570232	-0.40937	-0.000196	0.32923	0.00015763	-0.080141	-3.8371E-05	478.792400315705	45.777	0.96753	45.625	45.309	46.277	-0.15157					67	27	4	0	0	0	0.077175	3	4445	4445;4457;4467		118.74	18.021	1	6904200			85658	4256;18250	59656	59749	95073;95074;95075	95073					0.09066930965650499
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7931213378906	2	478.792392	955.570232	-0.12999	-6.2236E-05	0.16593	7.9446E-05	0.035944	1.721E-05	478.7923162471154	45.62	1.0568	45.664	45.377	46.433	0.043877					74	30	4	0	0	0	0.1158	3	4380	4380;4392;4404		107.01	10.817	1	6572200			85659	4256;18250	59656	59749	95076;95077;95078	95076					0.09066930965650499
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.79156494140625	2	478.792392	955.570232	0.38264	0.00018321	0.16053	7.6862E-05	0.54318	0.00026007	478.7922835795712	45.737	0.67945	45.64	45.359	46.039	-0.096649					45	18	4	0	0	0	0.091713	2	4363	4363;4374		113.41	2.337	1	2494300			85660	4256;18250	59656	59749	95079;95080	95079					0.09066930965650499
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;MACF1|p.N6271Mfs*32|1|0.21|ENSG00000127603|chr1:39442719-39442719|A/-|frameshift_variant;MACF1|p.I5321Dfs*20|1|0.07|ENSG00000127603|chr1:39422502-39422503|-/GATCCACTTGTTCTTTCTGAAACATCTAGAT|frameshift_variant;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3|MACF1	ENSG00000127603|ENST00000564288|MACF1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	478.792392	955.570232	-0.25316	-0.00012121	0.56316	0.00026963	0.31	0.00014842	478.79248360850306	45.925	0.54113	45.664	45.35	45.891	-0.26118	0.023563	0.00038808	NaN	131.03	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2419600			85661	4256;18250	59656	59749							0.09066930965650499
VLQGWPLL	8	Unmodified	_VLQGWPLL_					0	0	0		ENST00000592540.5_1_19:11256868-11257009:-|nuORF	ENST00000592540.5_1_19:11256868-11257009:-|nuORF	ENST00000592540.5_1_19:11256868-11257009:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.25067138671875	2	463.278921	924.543289	0.11638	5.3917E-05	-4.0894	-0.0018945	-3.973	-0.0018406	463.27665593907983	48.079	1.1229	48.146	47.747	48.87	0.066799					32	31	2	0	0	0	0.027866	1	4844	4844		29.842	0	1	240090			85662	17373	59657	59750	95081	95081					0.0779986714513825
VLQHELVAV	9	Unmodified	_VLQHELVAV_					0	0	0			REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72	REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.2976989746094	2	504.297842	1006.58113	-0.28794	-0.00014521	-0.5046	-0.00025447	-0.79254	-0.00039968	504.29746516953116	61.591	1.3014	61.663	61.315	62.616	0.071125					92	34	5	0	0	0	0.32811	2	7058	7046;7058		71.877	23.962	1	13741000	+		85663	27095	59658	59751	95082;95083	95083					0.07810333339944009
VLQIDKPMI	9	Unmodified	_VLQIDKPMI_					0	0	0			REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.81005859375	2	528.809728	1055.6049	0.093015	4.9187E-05	-1.9178	-0.0010141	-1.8248	-0.00096495	528.8086122210756	105.59	0.31338	105.59	105.44	105.75	0.00015259					18	10	2	0	0	0	0.56934	1	13473	13473		54.776	4.7518	1	67074	+		85664	31858	59659	59752	95084	95084					0.07932430782102529
VLQIDKPMI	9	Unmodified	_VLQIDKPMI_					0	0	0			REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.809728	1055.6049	-0.19549	-0.00010338	-1.7292	-0.0009144	-1.9247	-0.0010178	528.8087767939354	105.54	0.39572	105.54	105.36	105.76	0	-0.025489	4.1384E-05	NaN	54.776	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62430	+		85665	31858	59659	59752							0.07932430782102529
VLQIDKPMI	9	Unmodified	_VLQIDKPMI_					0	0	0			REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	528.809728	1055.6049	0.093015	4.9187E-05	-1.9178	-0.0010141	-1.8248	-0.00096495	528.8086122210756	105.59	0.31338	105.59	105.44	105.75	0.00015259	0.025489	-0.00015808	NaN	54.776	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67074	+		85666	31858	59659	59752							0.07932430782102529
VLQIFKSE	8	Unmodified	_VLQIFKSE_					0	0	0		nc|ENSG00000204410|O43196-4|MSH5;ENSG00000204410|ENST00000375750|MSH5;nc|ENSG00000204410|O43196-2|MSH5;nc|ENSG00000204410|O43196-3|MSH5	nc|ENSG00000204410|O43196-4|MSH5	nc|ENSG00000204410|O43196-4|MSH5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7601013183594	2	482.279118	962.543683	0.097219	4.6887E-05	0.36546	0.00017625	0.46267	0.00022314	482.27923854584844	77.965	0.52948	77.965	77.712	78.242	0					21	12	2	0	0	0	0.027866	1	9618	9618		47.916	0	1	323520			85667	10344	59660	59753	95085	95085					0.06091242074319325
VLQKAKEWEMK	11	Unmodified	_VLQKAKEWEMK_					0	0	0		ENSG00000157510|ENST00000296721|AFAP1L1;nc|ENSG00000157510|Q8TED9-4|AFAP1L1	ENSG00000157510|ENST00000296721|AFAP1L1	ENSG00000157510|ENST00000296721|AFAP1L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.81298828125	3	463.923479	1388.74861	-0.81491	-0.00037805	2.1137	0.00098059	1.2988	0.00060254	463.9245550555759	38.145	0.32445	37.924	37.761	38.085	-0.22149					12	9	2	0	0	0	0.024747	1	3142	3142		47.228	26.913	1	173680			85668	6604	59661	59754	95086	95086					0.06978232822370956
VLQKSRDLKF	10	Unmodified	_VLQKSRDLKF_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;nc|ENSG00000123815|Q96D53-2|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	411.560791015625	3	411.915312	1232.72411	-0.35362	-0.00014566	0.36603	0.00015077	0.012408	5.1109E-06	411.9153441099238	20.711	0.39708	20.488	20.365	20.762	-0.22344					12	7	2	0	0	0	0.03519	1	540	540		32.751	25.351	1	26943			85669	3999	59662	59755	95087	95087					0.11705340731145952
VLQLAPCLH	9	Unmodified	_VLQLAPCLH_					0	0	0			REV__ENST00000311481.10_1_11:66044719-66044914:+|nuORF	REV__ENST00000311481.10_1_11:66044719-66044914:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2986755371094	2	497.281137	992.547722	1.0908	0.00054242	-1.1907	-0.00059213	-0.099961	-4.9708E-05	497.27895305969383	70.719	0.4265	70.719	70.483	70.909	0					18	9	3	0	0	0	0.024517	1	8526	8526		26.796	0	1	131660	+		85670	30208	59663	59756	95088	95088					0.05115008296377255
VLQLPLFPV	9	Unmodified	_VLQLPLFPV_					0	0	0		ENST00000393784.7_1_5:172377848-172378373:+|nuORF	ENST00000393784.7_1_5:172377848-172378373:+|nuORF	ENST00000393784.7_1_5:172377848-172378373:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2691040039062	2	513.323328	1024.6321	0.34152	0.00017531	-4.4657	-0.0022924	-4.1242	-0.002117	513.3209284901822	79.132	0.66954	78.877	78.6	79.27	-0.25471					24	15	2	0	0	0	0.024541	1	9500	9500		18.324	4.1873	1	361720			85671	13464	59664	59757	95089	95089					0.12077282384802857
VLQNARGSL	9	Unmodified	_VLQNARGSL_					0	0	0		nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000160882|ENST00000292427|CYP11B1;ENSG00000179142|ENST00000323110|CYP11B2	nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000179142|ENST00000323110|CYP11B2	nc|ENSG00000160882|P15538-2|CYP11B1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2842102050781	2	479.277441	956.540328	0.086785	4.1594E-05	3.2211	0.0015438	3.3078	0.0015854	479.2793231244921	81.002	2.3435	81.002	79.447	81.791	0					113	56	3	0	0	0	0.33245	1	9888	9888		71.296	10.324	1	1529300			85672	6847;8876	59665	59758	95090	95090					0.06031992020314192
VLQNGYKFQ	9	Unmodified	_VLQNGYKFQ_					0	0	0			REV__nc|ENSG00000166508|P33993-2|MCM7	REV__nc|ENSG00000166508|P33993-2|MCM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.8209228515625	2	548.792924	1095.57129	0.1781	9.7742E-05	-0.50263	-0.00027584	-0.32453	-0.0001781	548.792717800121	56.999	0.80032	56.797	56.52	57.32	-0.20209					43	21	4	0	0	0	0.024506	1	6199	6199		30.504	4.9296	1	853000	+		85673	26029	59666	59759	95091	95091					0.027331453345595946
VLQPGRRA	8	Unmodified	_VLQPGRRA_					0	0	0			REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.261474609375	2	448.774868	895.535184	-0.093007	-4.1739E-05	0.39752	0.0001784	0.30452	0.00013666	448.77489135816427	41.06	0.49296	41.083	40.797	41.29	0.023006					28	13	3	0	0	0	0.027866	1	3637	3637		40.573	11.423	1	548760	+		85674	20252	59667	59760	95092	95092					0.08323732948372253
VLQPHENIV	9	Unmodified	_VLQPHENIV_					0	0	0		nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	nc|ENSG00000169554|O60315-2|ZEB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.7919921875	2	524.792924	1047.57129	-0.13961	-7.3266E-05	-0.6019	-0.00031587	-0.74151	-0.00038914	524.7925667156934	61.43	1.2235	61.204	60.86	62.084	-0.22663					95	32	4	0	0	0	0.50848	1	7075	7075		58.782	7.5893	1	8030000			85675	7948	59668	59761	95093	95093					0.04941145334532848
VLQPQVKNL	9	Unmodified	_VLQPQVKNL_					0	0	0			REV__ENST00000528307.5_1_11:14539460-14541880:-|nuORF	REV__ENST00000528307.5_1_11:14539460-14541880:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.305419921875	2	519.818941	1037.62333	0.16523	8.5888E-05	-1.7434	-0.00090624	-1.5782	-0.00082035	519.818251164067	93.095	1.0269	92.951	92.368	93.395	-0.1441					43	23	3	0	0	0	0.024436	1	11492	11492		23.042	1.0826	1	183670	+		85676	34493	59669	59762	95094	95094					0.10602308748320866
VLQQHLETL	9	Unmodified	_VLQQHLETL_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.3271484375	2	540.806031	1079.59751	-1.7096	-0.00092456	1.2787	0.00069151	-0.43094	-0.00023305	540.8065496867426	48.932	0.78894	49.006	48.527	49.316	0.074192					55	21	4	0	0	0	0.024466	1	4949	4949		39.253	3.6345	1	2318600			85677	5404	59670	59763	95095	95095					0.060894145060501614
VLQTALCCFT	10	Unmodified	_VLQTALCCFT_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ENST00000473136.4_2_3:88108451-88184391:+|nuORF	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.2794799804688	2	549.769745	1097.52494	0.027515	1.5127E-05	-0.23347	-0.00012835	-0.20596	-0.00011323	549.7695328192841	77.803	0.66365	77.592	77.333	77.997	-0.21087					34	15	3	0	0	0	0.03519	1	9600	9600		39.253	1.4413	1	806260			85678	8529	59671	59764	95096	95096					-0.019923788833921208
VLQVPIKLVDS	11	Unmodified	_VLQVPIKLVDS_					0	0	0			REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	REV__CD109|p.N1348Lfs*7|1|0.13|ENSG00000156535|chr6:73818517-73818518|-/CTCAGGAA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	605.8719482421875	2	605.873914	1209.73327	-0.27427	-0.00016617	-2.7727	-0.0016799	-3.047	-0.0018461	605.8720979427297	98.799	1.1689	98.63	98.284	99.453	-0.16862					84	26	5	0	0	0	1.018	1	12249	12249		32.812	0	1	990980	+		85679	19269	59672	59765	95097	95097					0.13679689296850484
VLQWFAERVDR	11	Unmodified	_VLQWFAERVDR_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7453918457031	3	473.589487	1417.74663	-0.3646	-0.00017267	-0.55538	-0.00026302	-0.91998	-0.00043569	473.92363909677323	48.723	0.32196	48.79	48.657	48.979	0.066795					14	8	2	0	0	0	0.024734	1	4950	4950		36.528	8.884	1	61604			85680	2534	59673	59766	95098	95098					0.054469401287633445
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2998046875	2	523.30005	1044.58555	-0.58399	-0.0003056	0.19796	0.00010359	-0.38604	-0.00020201	523.3001170119963	76.568	1.7253	76.568	76.15	77.876	0					84	41	5	0	0	0	0.057894	5	9450	9416;9425;9436;9450;9462		125.81	59.917	1	7889200			85681	2844	59674	59767	95099;95100;95101;95102;95103	95102					0.06503797762843533
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2997436523438	2	523.30005	1044.58555	-0.60792	-0.00031812	0.17486	9.1503E-05	-0.43306	-0.00022662	523.3001095672797	76.735	1.6071	76.506	76.121	77.728	-0.22843					85	38	5	0	0	0	0.11092	2	9423	9423;9448		108.09	38.849	1	7828000			85682	2844	59674	59767	95104;95105	95104					0.06503797762843533
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2991943359375	2	523.30005	1044.58555	0.2043	0.00010691	-0.82805	-0.00043332	-0.62375	-0.00032641	523.2996151246642	76.538	1.6888	76.55	76.128	77.817	0.011635					86	40	5	0	0	0	0.082191	4	9379	9343;9354;9366;9379		116.9	23.708	1	8080200			85683	2844	59674	59767	95106;95107;95108;95109	95109					0.06503797762843533
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	523.30005	1044.58555	-0.0031694	-1.6586E-06	-0.36576	-0.0001914	-0.36893	-0.00019306	523.2998094208159	76.806	0.75753	76.538	76.129	76.887	-0.26806	0.018774	-0.00017073	NaN	125.81	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1008500			85684	2844	59674	59767							0.06503797762843533
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.30005	1044.58555	0.38507	0.00020151	-0.82866	-0.00043364	-0.44359	-0.00023213	523.2995548376696	76.743	0.67699	76.492	76.186	76.863	-0.25163	-0.028081	-0.00065519	NaN	125.81	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	912530			85685	2844	59674	59767							0.06503797762843533
VLQYVVPEV	9	Unmodified	_VLQYVVPEV_					0	0	0		nc|ENSG00000107581|Q14152-2|EIF3A;ENSG00000107581|ENST00000369144|EIF3A;EIF3A|p.D389Y|1|0.15|ENSG00000107581|chr10:119061286-119061286|C/A|missense_variant	nc|ENSG00000107581|Q14152-2|EIF3A	nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.30005	1044.58555	-0.11135	-5.8269E-05	-0.42979	-0.00022491	-0.54114	-0.00028318	523.2997523173441	76.632	0.76118	76.463	76.138	76.899	-0.16854	-0.056212	-0.00023774	NaN	125.81	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897310			85686	2844	59674	59767							0.06503797762843533
VLRAGGPF	8	Unmodified	_VLRAGGPF_					0	0	0			REV__ENST00000608477.1_1_7:128170420-128171047:-|nuORF	REV__ENST00000608477.1_1_7:128170420-128171047:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.5423278808594	2	408.739963	815.465373	0.42481	0.00017364	0.63797	0.00026076	1.0628	0.0004344	408.7397014489218	22.545	0.3692	22.343	22.146	22.515	-0.20199					11	7	2	0	0	0	0.027866	1	763	763		29.842	6.8048	1	22132	+		85687	35970	59675	59768	95110	95110					0.05025854279756459
VLRALKTISV	10	Unmodified	_VLRALKTISV_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN3A|p.K585Efs*6|1|0.12|ENSG00000153253|chr2:165140917-165140918|-/C|frameshift_variant;SCN2A|p.E459Kfs*22|1|0.21|ENSG00000136531|chr2:165314100-165314100|G/-|frameshift_variant;SCN3A|p.R219T|1|0.25|ENSG00000153253|chr2:165163840-165163840|C/G|missense_variant;ENST00000472119.1_1_2:167159564-167162327:-|nuORF;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000183873|Q14524-5|SCN5A;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8118286132812	2	550.363516	1098.71248	-0.53948	-0.00029691	3.6673	0.0020183	3.1278	0.0017214	550.3655988860271	64.717	0.35153	64.482	64.256	64.607	-0.2345					12	8	2	0	0	0	0.03519	1	7330	7330		18.262	0	1	87289			85688	7940;6337;18631;5026;9288;37863	59676	59769	95111	95111					0.16707143707844807
VLRALPAH	8	Unmodified	_VLRALPAH_					0	0	0			REV__ENST00000550426.5_1_12:47599871-47609950:-|nuORF	REV__ENST00000550426.5_1_12:47599871-47609950:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.853515625	2	438.774337	875.534121	-0.76413	-0.00033528	0.61753	0.00027095	-0.1466	-6.4326E-05	438.77441981668954	38.604	0.46462	38.382	38.153	38.617	-0.22149					16	11	2	0	0	0	0.027866	1	3221	3221		15.636	0	1	88862	+		85689	34903	59677	59770	95112	95112					0.09137518579450443
VLRCIRLL	8	Unmodified	_VLRCIRLL_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.30609130859375	2	493.320597	984.626641	0.24125	0.00011902	0.90613	0.00044701	1.1474	0.00056603	493.32153009615047	69.398	0.24299	69.148	69.033	69.276	-0.25063					8	5	2	0	0	0	0.027866	1	8061	8061		26.796	0	1	44895			85690	1708	59678	59771	95113	95113					0.13371280321325685
VLRDGPAL	8	Unmodified	_VLRDGPAL_					0	0	0		nc|ENSG00000204161|Q5T292-3|TMEM273;nc|ENSG00000204161|Q5T292-2|TMEM273	nc|ENSG00000204161|Q5T292-3|TMEM273	nc|ENSG00000204161|Q5T292-3|TMEM273	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.52203369140625	2	420.750527	839.486502	-0.06718	-2.8266E-05	2.9397	0.0012369	2.8726	0.0012086	420.75114936792045	24.645	0.65187	24.47	24.169	24.821	-0.17484					22	14	2	0	0	0	0.027866	1	1115	1115		12.207	0	1	51225			85691	18655	59679	59772	95114	95114					0.06033819588606093
VLRDSIVML	9	Unmodified	_VLRDSIVML_					0	0	0		ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000479212.5_1_3:113627916-113664322:+|nuORF;nc|ENSG00000178075|Q8IYS0-2|GRAMD1C;ENST00000491038.1_1_3:113658724-113664322:+|nuORF	ENSG00000178075|ENST00000358160|GRAMD1C	ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3004760742188	2	523.307352	1044.60015	-1.3086	-0.00068481	-1.8642	-0.00097555	-3.1728	-0.0016604	523.306396315596	79.818	1.1321	79.646	79.275	80.407	-0.17226					58	26	3	0	0	0	0.19099	2	9865	9865;9876		90.37	20.742	1	996030			85692	8789	59680	59773	95115;95116	95115					0.07963546639348351
VLRDSIVML	9	Unmodified	_VLRDSIVML_					0	0	0		ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000479212.5_1_3:113627916-113664322:+|nuORF;nc|ENSG00000178075|Q8IYS0-2|GRAMD1C;ENST00000491038.1_1_3:113658724-113664322:+|nuORF	ENSG00000178075|ENST00000358160|GRAMD1C	ENSG00000178075|ENST00000358160|GRAMD1C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.30078125	2	523.307352	1044.60015	-0.3626	-0.00018975	-2.9279	-0.0015322	-3.2904	-0.0017219	523.3058564361266	79.646	0.95958	79.664	79.354	80.313	0.018677					50	22	3	0	0	0	0.19099	2	9816	9806;9816		90.37	13.596	1	936050			85693	8789	59680	59773	95117;95118	95118					0.07963546639348351
VLREVPSL	8	Unmodified	_VLREVPSL_					0	0	0		ENST00000350796.7_1_7:6203237-6203393:-|nuORF	ENST00000350796.7_1_7:6203237-6203393:-|nuORF	ENST00000350796.7_1_7:6203237-6203393:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.3128356933594	2	456.779285	911.544017	-0.55114	-0.00025175	1.7823	0.00081413	1.2312	0.00056238	456.7794830272025	44.317	0.44181	44.317	44.215	44.657	0					20	12	2	0	0	0	0.027866	1	4219	4219		55.504	27.622	1	90303			85694	12593	59681	59774	95119	95119					0.08470661794183343
VLREVTTEF	9	Unmodified	_VLREVTTEF_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.2981567382812	2	547.298039	1092.58152	-0.8593	-0.00047029	0.48207	0.00026384	-0.37722	-0.00020645	547.2982576321953	55.467	0.99401	55.251	54.967	55.961	-0.21551					65	27	3	0	0	0	0.53979	1	5969	5969		56.721	0	1	8005400			85695	4299	59682	59775	95120	95120					0.038937082691290925
VLRFISGR	8	Unmodified	_VLRFISGR_					0	0	0		ENSG00000174992|ENST00000400752|ZG16	ENSG00000174992|ENST00000400752|ZG16	ENSG00000174992|ENST00000400752|ZG16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.27166748046875	2	474.292894	946.571235	0.37067	0.00017581	-4.3935	-0.0020838	-4.0228	-0.001908	474.29077179975326	80.798	2.413	80.798	80.036	82.449	0					77	58	2	0	0	0	0.027866	1	9952	9952		19.36	0	1	98611			85696	8519	59683	59776	95121	95121					0.09581190125220473
VLRGAKVPTV	10	Unmodified	_VLRGAKVPTV_					0	0	0			REV__ENSG00000166902|ENST00000300151|MRPL16	REV__ENSG00000166902|ENST00000300151|MRPL16	MSMS	OPSCC_39_ClassI_Rep-1	1	520.8038940429688	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.255	1	70.255	69.755	70.755	0								0	0	0	0.16915	1	8486	8486		98.629	19.178	1		+		85697	26077	59684	59777	95122	95122					0.13718301502262875
VLRGHPPLL	9	Unmodified	_VLRGHPPLL_					0	0	0		nc|ENSG00000131779|O96011-2|PEX11B;ENSG00000131779|ENST00000369306|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.79559326171875	2	501.316369	1000.61818	-0.49146	-0.00024638	-0.0014498	-7.2682E-07	-0.49291	-0.0002471	501.3161168709779	67.045	0.41022	66.764	66.588	66.998	-0.28148					16	9	2	0	0	0	0.024541	1	7961	7961		16.473	0	1	397120			85698	4550	59685	59778	95123	95123					0.11790049676358194
VLRGLFGV	8	Unmodified	_VLRGLFGV_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL;nc|ENSG00000147485|A1KZ92-3|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	430.2483825683594	2	430.771263	859.527973	-0.69353	-0.00029875	1.1375	0.00049001	0.44398	0.00019125	430.7716355197884	37.848	0.4436	37.63	37.384	37.828	-0.21849					23	11	3	0	0	0	0.027866	1	3023	3023		37.028	8.7742	1	155110			85699	5972	59686	59779	95124	95124					0.09259000347947222
VLRGLFGV	8	Unmodified	_VLRGLFGV_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL;nc|ENSG00000147485|A1KZ92-3|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	430.771263	859.527973	-0.66955	-0.00028842	1.2232	0.0005269	0.55361	0.00023848	430.7717417664629	37.829	0.47726	37.608	37.39	37.867	-0.22017	-0.010572	3.0411E-05	NaN	37.028	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113510			85700	5972	59686	59779							0.09259000347947222
VLRGQNLVL	9	Unmodified	_VLRGQNLVL_					0	0	0		ENSG00000174456|ENST00000615315|C12orf76	ENSG00000174456|ENST00000615315|C12orf76	ENSG00000174456|ENST00000615315|C12orf76	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.3190002441406	2	506.319109	1010.62366	-0.49543	-0.00025085	-0.10034	-5.0807E-05	-0.59578	-0.00030165	506.3190492521723	53.076	1.0665	52.929	52.645	53.711	-0.14723					82	28	4	0	0	0	0.55828	1	5695	5695		55.504	0	1	10306000			85701	8469	59687	59780	95125	95125					0.11877728468152782
VLRHQRLT	8	Unmodified	_VLRHQRLT_					0	0	0			REV__nc|ENSG00000105732|Q6ZN55-2|ZNF574	REV__nc|ENSG00000105732|Q6ZN55-2|ZNF574	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2633972167969	2	511.814525	1021.6145	-0.65167	-0.00033353	-4.1974	-0.0021483	-4.8491	-0.0024818	512.3132533887897	79.179	0.66408	79.007	78.777	79.441	-0.17226					25	15	2	0	0	0	0.027866	1	9809	9809		13.775	0	1	167740	+		85702	36544	59688	59781	95126	95126					0.10455379902498407
VLRIRKRA	8	Unmodified	_VLRIRKRA_					0	0	0		ENSG00000115718|ENST00000234071|PROC;nc|ENSG00000115718|P04070-2|PROC	ENSG00000115718|ENST00000234071|PROC	ENSG00000115718|ENST00000234071|PROC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3312072753906	2	506.348535	1010.68252	-0.40497	-0.00020505	-3.1829	-0.0016117	-3.5879	-0.0018167	506.34742864212086	37.649	0.1507	37.681	37.6	37.751	0.032269					5	3	2	0	0	0	0.027866	1	3023	3023		28.254	6.5519	1	33281			85703	3483	59689	59782	95127	95127					0.17760249553157337
VLRKTLDP	8	Unmodified	_VLRKTLDP_					0	0	0		nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4;ENSG00000132718|ENST00000368324|SYT11	nc|ENSG00000132872|Q9H2B2-2|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.29296875	2	471.292559	940.570566	-0.11834	-5.5771E-05	0.038407	1.8101E-05	-0.07993	-3.7671E-05	471.29258327038116	50.194	1.2249	50.194	49.805	51.03	0					106	35	4	0	0	0	0.6248	1	5240	5240		73.975	0	1	24213000			85704	4648	59690	59783	95128	95128					0.09790350685523208
VLRLKGSG	8	Unmodified	_VLRLKGSG_					0	0	0		ENSG00000166226|ENST00000299300|CCT2;ENST00000551620.5_1_12:69979244-69983508:+|nuORF;nc|ENSG00000166226|P78371-2|CCT2	ENSG00000166226|ENST00000299300|CCT2	ENSG00000166226|ENST00000299300|CCT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.21221923828125	2	415.266345	828.518136	0.14789	6.1416E-05	0.55785	0.00023166	0.70574	0.00029307	415.26642004462065	27.682	0.4529	27.682	27.471	27.924	0					18	11	2	0	0	0	0.027866	1	1563	1563		19.36	0	1	81785			85705	7527	59691	59784	95129	95129					0.09701812342564153
VLRLNLGD	8	Unmodified	_VLRLNLGD_					0	0	0		nc|ENSG00000159082|O43426|SYNJ1;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426-5|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2684326171875	2	450.269084	898.523616	-1.0195	-0.00045903	-1.0014	-0.00045089	-2.0209	-0.00090993	450.2689401553208	38.077	2.3223	38.077	37.702	40.024	0					119	65	6	0	0	0	0.94517	1	3161	3161		45.952	5.1738	1	141320000			85706	18418	59692	59785	95130	95130					0.07029491134369437
VLRLNLGD	8	Unmodified	_VLRLNLGD_					0	0	0		nc|ENSG00000159082|O43426|SYNJ1;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426-5|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2688293457031	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.91239	2	3157	3157;3194		50.025	1.9636	1	136700000			85707	18418	59692	59785	95131;95132	95131					0.07029491134369437
VLRLNLGD	8	Unmodified	_VLRLNLGD_					0	0	0		nc|ENSG00000159082|O43426|SYNJ1;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426-5|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426|SYNJ1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2681884765625	2	450.269084	898.523616	-1.452	-0.00065378	-0.56919	-0.00025629	-2.0212	-0.00091006	450.2691329936004	38.153	1.9282	38.181	37.817	39.745	0.027279					131	53	5	0	0	0	0.93274	1	3112	3112		47.916	0	1	125590000			85708	18418	59692	59785	95133	95133					0.07029491134369437
VLRLVSGSAL	10	Unmodified	_VLRLVSGSAL_					0	0	0			REV__ENST00000461608.1_1_X:48664862-48665114:+|nuORF	REV__ENST00000461608.1_1_X:48664862-48665114:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2819519042969	2	507.818941	1013.62333	0.30683	0.00015581	-0.71172	-0.00036142	-0.40489	-0.00020561	507.818447851776	22.912	0.73805	22.71	22.499	23.237	-0.20193					29	15	3	0	0	0	0.03519	1	910	910		35.618	14.671	1	366590	+		85709	20947	59693	59786	95134	95134					0.1170630874833023
VLRNEIQR	8	Unmodified	_VLRNEIQR_					0	0	0		ENSG00000185737|ENST00000372141|NRG3;nc|ENSG00000185737|P56975-2|NRG3;nc|ENSG00000185737|P56975|NRG3;ENST00000555784.5_1_10:84711227-84745358:+|nuORF;nc|ENSG00000185737|P56975-3|NRG3	ENSG00000185737|ENST00000372141|NRG3	ENSG00000185737|ENST00000372141|NRG3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7881469726562	2	514.30399	1026.59343	-0.47775	-0.00024571	-0.20183	-0.0001038	-0.67958	-0.00034951	514.3037719910174	27.556	0.48366	27.543	27.277	27.761	-0.012983					24	12	3	0	0	0	0.027866	1	1540	1540		42.474	8.9589	1	134900			85710	9469	59694	59787	95135	95135					0.0811936980298924
VLRNSIMP	8	Unmodified	_VLRNSIMP_					0	0	0		ENST00000371368.5_1_1:54412201-54413639:+|nuORF	ENST00000371368.5_1_1:54412201-54413639:+|nuORF	ENST00000371368.5_1_1:54412201-54413639:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.31549072265625	2	465.265487	928.516422	-0.82411	-0.00038343	-1.5562	-0.00072403	-2.3803	-0.0011075	465.2648025585299	61.269	0.20789	61.093	60.997	61.205	-0.1761					6	4	2	0	0	0	0.027866	1	6841	6841		40.573	0	1	47271			85711	12992	59695	59788	95136	95136					0.04930435262292576
VLRPAQAL	8	Unmodified	_VLRPAQAL_					0	0	0		ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.2740783691406	2	434.27417	866.533787	-0.22234	-9.6558E-05	0.065116	2.8278E-05	-0.15723	-6.828E-05	434.27417487933866	47.873	1.456	47.72	47.336	48.792	-0.15301					85	42	4	0	0	0	0.85409	2	4819	4819;4833		54.765	10.234	1	19138000			85712	11564	59696	59789	95137;95138	95137					0.09518098859598467
VLRPAQAL	8	Unmodified	_VLRPAQAL_					0	0	0		ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	ENST00000264560.11_1_19:746959-747340:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.27508544921875	2	434.27417	866.533787	-0.41972	-0.00018227	0.26555	0.00011532	-0.15416	-6.695E-05	434.2742455559153	47.633	1.5808	47.692	47.354	48.935	0.059093					80	45	4	0	0	0	0.85409	1	4771	4771		54.765	12.29	1	18334000			85713	11564	59696	59789	95139	95139					0.09518098859598467
VLRPGGAF	8	Unmodified	_VLRPGGAF_					0	0	0		ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	ENSG00000185432|ENST00000332160|METTL7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	408.8852233886719	2	408.739963	815.465373	1.9881	0.00081261	2.1766	0.00088966	4.1647	0.0017023	408.74150241722117	24.213	0.25945	24.032	23.938	24.198	-0.18089					8	5	2	0	0	0	0.027866	1	1007	1007		37.028	15.326	1	22217			85714	9437	59697	59790	95140	95140					0.05025854279756459
VLRQTPPL	8	Unmodified	_VLRQTPPL_					0	0	0		ENSG00000103260|ENST00000568223|METRN;ENST00000219542.3_3_16:767039-767384:+|nuORF	ENSG00000103260|ENST00000568223|METRN	ENSG00000103260|ENST00000568223|METRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	462.2879638671875	2	462.287277	922.560001	0.75314	0.00034817	-0.25079	-0.00011594	0.50234	0.00023223	462.28721463804175	59.285	0.69884	59.37	59.099	59.798	0.085686					54	18	4	0	0	0	0.46709	1	6686	6686		88.643	0	1	5592900			85715	2488	59698	59791	95141	95141					0.09562368031083679
VLRRGSSQL	9	Unmodified	_VLRRGSSQL_					0	0	0		ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7749938964844	2	508.30399	1014.59343	0.080344	4.0839E-05	1.9595	0.00099602	2.0398	0.0010369	508.30475278936814	86.969	0.71536	86.933	86.563	87.279	-0.035355					29	16	3	0	0	0	0.024541	1	10915	10915		25.574	0	1	322510			85716	13581	59699	59792	95142	95142					0.08671369803005291
VLRRGSSQL	9	Unmodified	_VLRRGSSQL_					0	0	0		ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.30399	1014.59343	0.069806	3.5483E-05	1.3288	0.00067543	1.3986	0.00071091	508.30454772113166	87.02	0.63293	87.02	86.561	87.194	0	0.045235	-0.00024513	NaN	47.657	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290560			85717	13581	59699	59792							0.08671369803005291
VLRRGSSQL	9	Unmodified	_VLRRGSSQL_					0	0	0		ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	ENST00000397128.6_1_5:40765139-40765226:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	508.30399	1014.59343	0.24655	0.00012532	1.3043	0.00066297	1.5508	0.0007883	508.30447370865835	86.951	0.63124	86.972	86.547	87.178	0.021263	-0.0032438	-0.00027004	NaN	47.657	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350950			85718	13581	59699	59792							0.08671369803005291
VLRRKMEEA	9	Unmodified	_VLRRKMEEA_					0	0	0		KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.7764282226562	2	566.318783	1130.62301	0.074084	4.1955E-05	-3.9497	-0.0022368	-3.8756	-0.0021948	566.3166893073362	46.155	0.48173	46.058	45.777	46.259	-0.096649					20	12	3	0	0	0	0.024447	1	4453	4453		25.574	9.9322	1	384830			85719	17801	59700	59793	95143	95143					0.0629256575684849
VLRRKMEEA	9	Unmodified	_VLRRKMEEA_					0	0	0		KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.318783	1130.62301	-1.0471	-0.00059297	-9.4182	-0.0053337	-10.465	-0.0059267	566.3132836207292	45.924	0.79767	45.773	45.512	46.31	-0.15156	-0.20121	-0.0014353	NaN	25.574	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2208900			85720	17801	59700	59793							0.0629256575684849
VLRRKMEEA	9	Unmodified	_VLRRKMEEA_					0	0	0		KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	KIF4B|p.T704M|1|0.22|ENSG00000226650|chr5:155015970-155015970|C/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	566.318783	1130.62301	-0.91387	-0.00051754	-9.3836	-0.0053141	-10.297	-0.0058316	566.3133127274425	45.809	0.65356	45.853	45.647	46.301	0.04388	-0.12129	-0.0013961	NaN	25.574	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1924400			85721	17801	59700	59793							0.0629256575684849
VLRRPQKG	8	Unmodified	_VLRRPQKG_					0	0	0		nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;ENST00000532504.5_1_11:70185286-70228249:+|nuORF	nc|ENSG00000131626|Q13136-2|PPFIA1	nc|ENSG00000131626|Q13136-2|PPFIA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.27703857421875	2	477.303793	952.593033	-0.065255	-3.1146E-05	2.1609	0.0010314	2.0957	0.0010003	477.3045422158358	74.919	0.3216	74.929	74.69	75.012	0.010368					11	7	2	0	0	0	0.027866	1	9108	9108		33.516	13.519	1	74869			85722	4537	59701	59794	95144	95144					0.11483994873799475
VLRSIVGI	8	Unmodified	_VLRSIVGI_					0	0	0		ENSG00000186918|ENST00000344423|ZNF395	ENSG00000186918|ENST00000344423|ZNF395	ENSG00000186918|ENST00000344423|ZNF395	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	428.19012451171875	2	428.78437	855.554188	-0.1145	-4.9097E-05	0.19079	8.1807E-05	0.076286	3.271E-05	428.7843329250873	25.211	0.35259	24.984	24.752	25.105	-0.22683					13	7	2	0	0	0	0.027866	1	1182	1182		19.36	0	1	73158			85723	9594	59702	59795	95145	95145					0.12063269519433106
VLRSKEGLL	9	Unmodified	_VLRSKEGLL_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.28515625	2	507.818941	1013.62333	-1.2024	-0.00061061	0.36446	0.00018508	-0.83795	-0.00042553	507.8190540995337	30.816	0.54012	30.816	30.675	31.216	0					18	12	2	0	0	0	0.024405	1	2013	2013		35.618	10.044	1	82736			85724	1247	59703	59796	95146	95146					0.1170630874833023
VLRSKEGLL	9	Unmodified	_VLRSKEGLL_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.2846984863281	2	507.818941	1013.62333	-0.50131	-0.00025457	-0.25943	-0.00013174	-0.76074	-0.00038632	507.8187381628023	30.757	0.54236	30.769	30.584	31.127	0.011797					18	12	2	0	0	0	0.024405	1	2000	2000		44.117	6.9577	1	103410			85725	1247	59703	59796	95147	95147					0.1170630874833023
VLRSLHLE	8	Unmodified	_VLRSLHLE_					0	0	0		CRADD|p.R13H|1|0.52|ENSG00000169372|chr12:93678812-93678812|G/A|missense_variant	CRADD|p.R13H|1|0.52|ENSG00000169372|chr12:93678812-93678812|G/A|missense_variant	CRADD|p.R13H|1|0.52|ENSG00000169372|chr12:93678812-93678812|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	483.7901306152344	2	483.790184	965.565815	-0.12779	-6.1822E-05	-0.22514	-0.00010892	-0.35293	-0.00017075	483.79006972796594	36.645	1.3437	36.429	36.088	37.432	-0.21661					71	33	3	0	0	0	0.68164	1	2917	2917		68.787	2.3575	1	9174100			85726	583	59704	59797	95148	95148					0.08165466542766353
VLRTKEAF	8	Unmodified	_VLRTKEAF_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2844543457031	2	482.284734	962.554916	-0.12077	-5.8243E-05	-0.60003	-0.00028938	-0.72079	-0.00034763	482.28451687068633	54.696	1.6493	54.465	54.181	55.83	-0.23087					115	46	5	0	0	0	0.65272	1	5835	5835		71.378	0	1	22178000			85727	6556	59705	59798	95149	95149					0.07214064168454115
VLRTKEAF	8	Unmodified	_VLRTKEAF_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.284423828125	2	482.284734	962.554916	1.0582	0.00051037	-1.7424	-0.00084035	-0.68419	-0.00032997	482.2839715054123	54.672	1.7378	54.466	54.087	55.825	-0.20613					114	47	4	0	0	0	0.97924	1	5851	5851		40.573	0	1	19378000			85728	6556	59705	59798	95150	95150					0.07214064168454115
VLRTKRIYN	9	Unmodified	_VLRTKRIYN_					0	0	0			REV__NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	REV__NUP155|p.V528Gfs*55|1|0.25|ENSG00000113569|chr5:37331731-37331731|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	582.2907104492188	2	581.85639	1161.69823	-1.0181	-0.00059241	3.9979	0.0023262	2.9798	0.0017338	581.8585696828312	65.05	0.64323	64.794	64.582	65.225	-0.25562					37	15	3	0	0	0	0.024405	1	7464	7464		44.117	8.4985	1	574910	+		85729	37300	59706	59799	95151	95151					0.12384491279567555
VLRVPLTQ	8	Unmodified	_VLRVPLTQ_					0	0	0		ENST00000565054.5_1_16:81772902-81819632:+|nuORF	ENST00000565054.5_1_16:81772902-81819632:+|nuORF	ENST00000565054.5_1_16:81772902-81819632:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	463.25164794921875	2	463.295102	924.575651	-0.36474	-0.00016898	0.36506	0.00016913	0.00032393	1.5008E-07	463.29513299671424	30.257	0.34294	30.013	29.862	30.205	-0.24415					11	7	2	0	0	0	0.027866	1	1915	1915		23.042	3.6825	1	79120			85730	16911	59707	59800	95152	95152					0.1103465454812067
VLRVPLTQ	8	Unmodified	_VLRVPLTQ_					0	0	0		ENST00000565054.5_1_16:81772902-81819632:+|nuORF	ENST00000565054.5_1_16:81772902-81819632:+|nuORF	ENST00000565054.5_1_16:81772902-81819632:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	463.295102	924.575651	-0.80592	-0.00037338	0.77021	0.00035683	-0.035706	-1.6543E-05	463.2952270774176	30.162	0.42443	29.984	29.74	30.164	-0.17818	-0.014115	0.00027344	NaN	23.042	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69912			85731	16911	59707	59800							0.1103465454812067
VLRVSSSF	8	Unmodified	_VLRVSSSF_					0	0	0			REV__ENST00000264235.12_2_3:119812650-119812956:-|nuORF	REV__ENST00000264235.12_2_3:119812650-119812956:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2082214355469	2	447.75581	893.497067	-1.1041	-0.00049436	1.958	0.00087671	0.85394	0.00038236	447.7564740292115	21.637	0.43678	21.424	21.118	21.555	-0.2128					12	8	2	0	0	0	0.027866	1	666	666		26.796	0	1	27838	+		85732	29715	59708	59801	95153	95153					0.04605802243054313
VLRVTHEL	8	Unmodified	_VLRVTHEL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	483.7900695800781	2	483.790184	965.565815	0.12753	6.1697E-05	-0.62637	-0.00030303	-0.49884	-0.00024133	483.7898822683617	36.627	1.5424	36.422	35.953	37.496	-0.20518					84	39	3	0	0	0	0.71063	2	2890	2890;2902		66.429	2.222	1	9434800			85733	7485;16179	59709	59802	95154;95155	95154					0.08165466542754984
VLRVTHEL	8	Unmodified	_VLRVTHEL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MSMS	OPSCC_40_ClassI_Rep-3	6	483.7901611328125	2	483.790184	965.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.521	1	36.322	35.822	36.822	-0.19829								0	0	0	0.44619	1	2853	2853		60.972	7.6205	1				85734	7485;16179	59709	59802	95156	95156					0.08165466542754984
VLRVTHEL	8	Unmodified	_VLRVTHEL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MSMS	OPSCC_40_ClassI_Rep-3	6	483.79010009765625	2	483.790184	965.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.787	1	36.578	36.078	37.078	-0.2092								0	0	0	0.46303	1	2893	2893		58.782	2.0609	1				85735	7485;16179	59709	59802	95157	95157					0.08165466542754984
VLSAAKKSTG	10	Unmodified	_VLSAAKKSTG_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.80096435546875	2	481.287474	960.560395	0.38525	0.00018542	2.4271	0.0011681	2.8123	0.0013535	481.28850125499474	93.877	0.92906	93.877	93.515	94.444	0					32	22	2	0	0	0	0.03519	1	12015	12015		44.377	12.422	1	292050			85736	5959	59710	59803	95158	95158					0.07853742960287491
VLSAAYGPTVI	11	Unmodified	_VLSAAYGPTVI_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.81103515625	2	545.810782	1089.60701	-1.5334	-0.00083692	2.8431	0.0015518	1.3097	0.00071486	545.8126020667369	91.474	1.5267	91.474	91.011	92.537	0					93	36	4	0	0	0	0.44817	1	11607	11607		79.713	2.9384	1	3855000	+		85737	24950	59711	59804	95159	95159					0.0657918279155183
VLSAAYGPTVI	11	Unmodified	_VLSAAYGPTVI_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.8106689453125	2	545.810782	1089.60701	-0.37303	-0.00020361	1.0814	0.00059025	0.70839	0.00038665	545.8117218925679	91.512	1.7794	91.523	91.237	93.017	0.011276					99	42	5	0	0	0	0.72712	1	11538	11538		62.107	0	1	4663500	+		85738	24950	59711	59804	95160	95160					0.0657918279155183
VLSAEPQETP	10	Unmodified	_VLSAEPQETP_					0	0	0			REV__nc|nan|Q96N68|C18orf15	REV__nc|nan|Q96N68|C18orf15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7568359375	2	535.771854	1069.52915	-0.49163	-0.0002634	-3.3432	-0.0017912	-3.8348	-0.0020546	535.7703720620746	76.097	0.64882	75.928	75.703	76.352	-0.16853					22	15	2	0	0	0	0.03519	1	9070	9070		28.081	3.8787	1	85087	+		85739	37262	59712	59805	95161	95161					-0.002828748644787993
VLSAFQEPHL	10	Unmodified	_VLSAFQEPHL_					0	0	0		nc|ENSG00000166888|P42226-3|STAT6;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF	nc|ENSG00000166888|P42226-3|STAT6	nc|ENSG00000166888|P42226-3|STAT6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.8069458007812	2	570.806031	1139.59751	-1.1434	-0.00065268	1.8572	0.0010601	0.71376	0.00040742	570.8069424010596	73.973	0.9367	73.983	73.753	74.69	0.0096512					64	21	4	0	0	0	0.91678	1	8982	8982		52.937	2.9122	1	3712400			85740	7622	59713	59806	95162	95162					0.0332941450603812
VLSAFVEKKV	10	Unmodified	_VLSAFVEKKV_					0	0	0		ENST00000590387.1_1_18:21107838-21109292:+|nuORF	ENST00000590387.1_1_18:21107838-21109292:+|nuORF	ENST00000590387.1_1_18:21107838-21109292:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	560.3402099609375	2	560.342249	1118.66995	-0.38796	-0.00021739	-3.4302	-0.0019221	-3.8182	-0.0021395	560.3401809188904	101.1	1.8443	101.11	100.79	102.63	0.0090256					135	42	6	0	0	0	1.0236	1	12943	12943		42.864	2.0861	1	14349000			85741	17332	59714	59807	95163	95163					0.11535748579603933
VLSAIKAKLP	10	Unmodified	_VLSAIKAKLP_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.76416015625	2	520.347335	1038.68012	-0.66556	-0.00034632	0.85457	0.00044467	0.18901	9.835E-05	520.3475961423559	83.589	1.9402	83.498	83.172	85.112	-0.090454					78	45	3	0	0	0	0.03519	1	10493	10493		26.693	3.6504	1	231990	+		85742	27391	59715	59808	95164	95164					0.16232356304840323
VLSAIYRMN	9	Unmodified	_VLSAIYRMN_					0	0	0			REV__VPS33B|p.K90R|1|0.19|ENSG00000184056|chr15:91014404-91014404|T/C|missense_variant	REV__VPS33B|p.K90R|1|0.19|ENSG00000184056|chr15:91014404-91014404|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.3388671875	2	533.789327	1065.5641	0.68211	0.0003641	-1.8877	-0.0010077	-1.2056	-0.00064356	534.2885418788079	97.814	0.48541	97.691	97.327	97.812	-0.12369					15	10	2	0	0	0	0.024506	1	12128	12128		30.504	15.84	1	122010	+		85743	27633	59716	59809	95165	95165					0.03394089462494776
VLSARVVTP	9	Unmodified	_VLSARVVTP_					0	0	0			REV__ENST00000540317.5_1_11:61120455-61129340:-|nuORF	REV__ENST00000540317.5_1_11:61120455-61129340:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7718811035156	2	471.292559	940.570566	0.401	0.00018899	-1.8765	-0.00088437	-1.4755	-0.00069538	471.2919867167171	46.536	0.48409	46.587	46.274	46.758	0.051395					18	13	2	0	0	0	0.024477	1	4573	4573		27.882	0	1	148050	+		85744	34744	59717	59810	95166	95166					0.09790350685523208
VLSAVSWKL	9	Unmodified	_VLSAVSWKL_					0	0	0		ENST00000534564.5_1_11:85975200-85975380:+|nuORF	ENST00000534564.5_1_11:85975200-85975380:+|nuORF	ENST00000534564.5_1_11:85975200-85975380:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.80303955078125	2	501.80276	1001.59097	0.36344	0.00018238	-1.2762	-0.00064039	-0.91273	-0.00045801	501.8020144701798	57.551	0.53634	57.376	57.072	57.608	-0.1749					49	13	5	0	0	0	0.17822	1	6443	6443		93.195	18.94	1	2857800			85745	16332	59718	59811	95167	95167					0.09023521345329755
VLSAVSWKL	9	Unmodified	_VLSAVSWKL_					0	0	0		ENST00000534564.5_1_11:85975200-85975380:+|nuORF	ENST00000534564.5_1_11:85975200-85975380:+|nuORF	ENST00000534564.5_1_11:85975200-85975380:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	501.80276	1001.59097	-0.12442	-6.2434E-05	-0.62603	-0.00031414	-0.75045	-0.00037658	501.80227747186404	57.367	0.49363	57.367	57.073	57.567	0	0.016939	0.00022152	NaN	93.195	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4063600			85746	16332	59718	59811							0.09023521345329755
VLSDFVEGRSR	11	Unmodified	_VLSDFVEGRSR_					0	0	0		ENST00000419850.1_2_11:5705367-5706176:-|nuORF;ENST00000380034.7_1_11:5701415-5706176:-|nuORF	ENST00000419850.1_2_11:5705367-5706176:-|nuORF	ENST00000419850.1_2_11:5705367-5706176:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.1620788574219	3	422.226326	1263.65715	-0.07914	-3.3415E-05	0.33364	0.00014087	0.2545	0.00010746	422.2264340489578	31.422	0.73141	31.27	30.968	31.699	-0.15231					42	18	3	0	0	0	0.024738	1	2052	2052		31.068	6.0004	1	300770			85747	13296	59719	59812	95168	95168					0.0358668544943157
VLSDIIQNL	9	Unmodified	_VLSDIIQNL_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7959289550781	2	507.795132	1013.57571	0.56356	0.00028617	-0.34986	-0.00017766	0.21369	0.00010851	507.7947934484365	84.285	0.93963	84.082	83.776	84.716	-0.20329					32	21	3	0	0	0	0.14024	2	10174	10174;10186		101.6	13.846	1	506610			85748	3969	59720	59813	95169;95170	95169					0.06946609757460465
VLSDIIQNL	9	Unmodified	_VLSDIIQNL_					0	0	0		nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7948303222656	2	507.795132	1013.57571	0.5135	0.00026076	-0.55891	-0.00028381	-0.045407	-2.3058E-05	507.7946354186715	84.193	0.89978	84.034	83.757	84.657	-0.15868					33	20	4	0	0	0	0.091713	1	10183	10183		113.41	14.037	1	696960			85749	3969	59720	59813	95171	95171					0.06946609757460465
VLSDQPGLL	9	Unmodified	_VLSDQPGLL_					0	0	0		nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.268798828125	2	471.26875	940.522947	0.99618	0.00046947	-0.69563	-0.00032783	0.30055	0.00014164	471.26825266472514	78.428	0.94969	78.236	77.891	78.841	-0.1921					43	22	3	0	0	0	0.5973	1	9697	9697		52.937	6.4799	1	2285200			85750	18056	59721	59814	95172	95172					0.0503065169467618
VLSDTTIDI	9	Unmodified	_VLSDTTIDI_					0	0	0			REV__ENST00000471426.1_1_3:29322824-29323057:+|nuORF	REV__ENST00000471426.1_1_3:29322824-29323057:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.24981689453125	2	488.763497	975.512442	-0.11548	-5.6441E-05	2.4636	0.0012041	2.3481	0.0011477	488.7646241183782	25.53	0.59089	25.61	25.459	26.049	0.08009					29	13	3	0	0	0	0.024354	1	1218	1218		38.806	6.8513	1	130540	+		85751	33175	59722	59815	95173	95173					0.02370624249579123
VLSELLWQV	9	Unmodified	_VLSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8134155273438	2	543.813325	1085.6121	-0.48146	-0.00026183	0.29691	0.00016147	-0.18455	-0.00010036	543.8134062116874	93.473	2.0855	93.473	93.093	95.179	0					127	49	4	0	0	0	0.021872	5	11871	11850;11860;11871;11882;11896		148.04	43.619	1	4663900			85752	4051;3357	59723	59816	95174;95175;95176;95177;95178	95176					0.07271486654190085
VLSELLWQV	9	Unmodified	_VLSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	543.813232421875	2	543.813325	1085.6121	-1.0513	-0.00057171	0.79174	0.00043056	-0.25955	-0.00014115	543.8136882490887	93.459	2.4349	93.455	92.776	95.211	-0.0042038					125	57	4	0	0	0	0.014988	4	11841	11820;11831;11841;11856		161.9	47.056	1	5067900			85753	4051;3357	59723	59816	95179;95180;95181;95182	95181					0.07271486654190085
VLSELLWQV	9	Unmodified	_VLSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.813232421875	2	543.813325	1085.6121	-1.1179	-0.00060795	0.90295	0.00049104	-0.21499	-0.00011691	543.8137326401533	93.534	2.1756	93.542	93.097	95.273	0.0077286					110	51	4	0	0	0	0.027092	5	11814	11780;11788;11800;11814;11826		143.89	59.374	1	4268500			85754	4051;3357	59723	59816	95183;95184;95185;95186;95187	95186					0.07271486654190085
VLSELLWQV	9	Unmodified	_VLSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	543.8134155273438	2	543.813325	1085.6121	-1.5332	-0.00083376	1.4456	0.00078611	-0.087625	-4.7652E-05	543.8140236078639	93.369	1.9326	93.229	92.873	94.805	-0.13995					100	44	3	0	0	0	0.021872	5	11475	11465;11475;11487;11499;11513		148.04	48.668	1	3411200			85755	4051;3357	59723	59816	95188;95189;95190;95191;95192	95189					0.07271486654190085
VLSELLWQV	9	Unmodified	_VLSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.8134765625	2	543.813325	1085.6121	-0.059452	-3.2331E-05	-0.031303	-1.7023E-05	-0.090754	-4.9353E-05	543.8132500611687	93.419	1.8004	93.297	92.927	94.727	-0.12215					137	41	6	0	0	0	0.021872	4	11517	11484;11494;11505;11517		148.04	48.668	1	3859300			85756	4051;3357	59723	59816	95193;95194;95195;95196	95196					0.07271486654190085
VLSELLWQV	9	Unmodified	_VLSELLWQV_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.8134765625	2	543.813325	1085.6121	-0.64465	-0.00035057	0.30577	0.00016628	-0.33888	-0.00018429	543.8134735055382	93.475	1.975	93.331	93.002	94.976	-0.1441					124	45	5	0	0	0	0.013333	4	11497	11474;11485;11497;11510		176.41	52.331	1	4132800			85757	4051;3357	59723	59816	95197;95198;95199;95200	95199					0.07271486654190085
VLSELPPI	8	Unmodified	_VLSELPPI_					0	0	0		ENSG00000067840|ENST00000393758|PDZD4	ENSG00000067840|ENST00000393758|PDZD4	ENSG00000067840|ENST00000393758|PDZD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.247314453125	2	434.262936	866.51132	-0.89666	-0.00038939	-0.022035	-9.569E-06	-0.91869	-0.00039896	434.2629640287862	29.105	0.24469	29.105	28.904	29.149	0					8	5	2	0	0	0	0.027866	1	1759	1759		20.482	0	1	41090			85758	1371	59724	59817	95201	95201					0.07272454671340256
VLSEQGKSLP	10	Unmodified	_VLSEQGKSLP_					0	0	0		chr4:67649211-67660890|138|12.25|0.08|7.18|-|0|TE_info:THE1D-int,THE1D-int_dup616,ERVL-MaLR,LTR,donor,+,67660890,67661264|UBA6,None|2	chr4:67649211-67660890|138|12.25|0.08|7.18|-|0|TE_info:THE1D-int,THE1D-int_dup616,ERVL-MaLR,LTR,donor,+,67660890,67661264|UBA6,None|2	chr4:67649211-67660890|138|12.25|0.08|7.18|-|0|TE_info:THE1D-int,THE1D-int_dup616,ERVL-MaLR,LTR,donor,+,67660890,67661264|UBA6,None|2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2982788085938	2	529.298039	1056.58152	-0.22091	-0.00011693	-0.71947	-0.00038082	-0.94038	-0.00049774	529.2974915684347	106.43	0.70708	106.43	106.04	106.75	-0.0013199					53	23	4	0	0	0	1.089	1	13606	13606		34.173	5.0025	1	1408400			85759	395	59725	59818	95202	95202					0.055497082691545074
VLSETLYEL	9	Unmodified	_VLSETLYEL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.7869873046875	2	533.786973	1065.55939	0.461	0.00024607	0.54897	0.00029303	1.01	0.00053911	533.7871441592763	78.22	0.65277	78.028	77.564	78.216	-0.1921					44	15	4	0	0	0	0.22754	1	9637	9637		85.359	0.44396	1	1979900			85760	3124	59726	59819	95203	95203					0.02923483800714166
VLSETLYEL	9	Unmodified	_VLSETLYEL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.7864990234375	2	533.786973	1065.55939	-0.82484	-0.00044029	1.9294	0.0010299	1.1045	0.00058958	533.7878279789699	78.054	0.9056	78.07	77.658	78.564	0.015907					48	21	4	0	0	0	0.29104	1	9572	9572		76.847	8.0598	1	1890500			85761	3124	59726	59819	95204	95204					0.02923483800714166
VLSETLYEL	9	Unmodified	_VLSETLYEL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.786973	1065.55939	-0.4588	-0.0002449	1.1696	0.00062434	0.71084	0.00037944	533.7875396194574	78.227	0.76398	77.971	77.319	78.083	-0.2555	-0.0080629	-0.00029444	NaN	85.359	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585480			85762	3124	59726	59819							0.02923483800714166
VLSETLYEL	9	Unmodified	_VLSETLYEL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.786973	1065.55939	0.14885	7.9455E-05	1.5534	0.00082918	1.7022	0.00090864	533.7876605769814	78.13	0.67525	77.888	77.32	77.995	-0.24232	-0.091667	0.00011524	NaN	85.359	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	759570			85763	3124	59726	59819							0.02923483800714166
VLSETLYEL	9	Unmodified	_VLSETLYEL_					0	0	0		nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	nc|ENSG00000111602|Q9UNS1-2|TIMELESS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.786973	1065.55939	-0.42825	-0.0002286	1.4242	0.00076021	0.99593	0.00053161	533.7876910115322	78.069	0.68272	77.913	77.317	78	-0.15591	-0.066315	-2.2704E-05	NaN	85.359	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684490			85764	3124	59726	59819							0.02923483800714166
VLSFLNSSLW	10	Unmodified	_VLSFLNSSLW_					0	0	0			REV__nc|ENSG00000155463|Q15070-2|OXA1L	REV__nc|ENSG00000155463|Q15070-2|OXA1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.28515625	2	583.316232	1164.61791	-0.91782	-0.00053538	-1.2795	-0.00074636	-2.1973	-0.0012817	583.3150549576478	55.344	0.13119	55.113	54.997	55.128	-0.23087					6	3	2	0	0	0	0.03519	1	5931	5931		98.629	21.312	1	108270	+		85765	25007	59727	59820	95205	95205					0.042185851658587126
VLSFPVSIL	9	Unmodified	_VLSFPVSIL_					0	0	0			REV__ENST00000414276.6_1_1:150237967-150238186:-|nuORF	REV__ENST00000414276.6_1_1:150237967-150238186:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79742431640625	2	487.799686	973.584819	-1.0216	-0.00049831	-4.3624	-0.002128	-5.384	-0.0026263	487.7974619641112	75.539	1.6042	75.539	75.155	76.759	0					110	41	4	0	0	0	0.75282	1	9276	9276		42.474	0	1	8547400	+		85766	32032	59728	59821	95206	95206					0.09697003113808478
VLSGKRIPPD	10	Unmodified	_VLSGKRIPPD_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	541.322265625	2	541.321848	1080.62914	-0.98465	-0.00053301	-0.086361	-4.6749E-05	-1.071	-0.00057976	541.3217675287749	60.274	2.0855	60.073	59.356	61.442	-0.2004					144	55	4	0	0	0	0.69662	1	6910	6910		67.494	4.1874	1	23185000			85767	790	59729	59822	95207	95207					0.09205407259969434
VLSGLLAVLD	10	Unmodified	_VLSGLLAVLD_					0	0	0			REV__ENSG00000150656|ENST00000358821|CNDP1	REV__ENSG00000150656|ENST00000358821|CNDP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.6048278808594	2	500.307875	998.601197	-0.45662	-0.00022845	0.31677	0.00015848	-0.13986	-6.9972E-05	500.307762747397	56.236	0.94172	56.079	55.82	56.761	-0.15655					51	23	4	0	0	0	0.03519	1	6089	6089		66.429	24.033	1	1668100	+		85768	24728	59730	59823	95208	95208					0.10184084279887884
VLSHLIAPGG	10	Unmodified	_VLSHLIAPGG_					0	0	0			REV__DTD1-RALGAPA2|1|fusion	REV__DTD1-RALGAPA2|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.2848815917969	2	482.284734	962.554916	-0.35687	-0.00017212	-0.066731	-3.2184E-05	-0.42361	-0.0002043	482.284692551653	54.575	1.5368	54.575	54.249	55.786	0					78	43	2	0	0	0	0.91051	1	5965	5965		53.351	0	1	24056000	+		85769	19715	59731	59824	95209	95209					0.07214064168465484
VLSHLQPLG	9	Unmodified	_VLSHLQPLG_					0	0	0			REV__ENSG00000130764|ENST00000378251|LRRC47	REV__ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2850646972656	2	482.284734	962.554916	-0.12077	-5.8243E-05	-0.60003	-0.00028938	-0.72079	-0.00034763	482.28451687068633	54.696	1.6493	54.465	54.181	55.83	-0.23087					115	46	5	0	0	0	0.35646	1	5801	5801		68.787	2.3575	1	22178000	+		85770	23152	59732	59825	95210	95210					0.07214064168465484
VLSIQTPTE	9	Unmodified	_VLSIQTPTE_					0	0	0			REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	REV__ENST00000418843.5_2_10:14977491-14987187:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.7347717285156	2	494.27149	986.528426	0.62668	0.00030975	3.5446	0.001752	4.1712	0.0020617	494.2715025001857	67.975	0.36523	67.72	67.497	67.862	-0.25516					11	8	2	0	0	0	0.024447	1	7815	7815		49.442	32.077	1	68536	+		85771	24841	59733	59826	95211	95211					0.03462330486456722
VLSKKNQF	8	Unmodified	_VLSKKNQF_					0	0	0			REV__ENST00000533268.1_1_11:100207665-100208043:+|nuORF	REV__ENST00000533268.1_1_11:100207665-100208043:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2853088378906	2	482.284734	962.554916	-0.12077	-5.8243E-05	-0.60003	-0.00028938	-0.72079	-0.00034763	482.28451687068633	54.696	1.6493	54.465	54.181	55.83	-0.23087					115	46	5	0	0	0	0.845	1	5862	5862		55.504	0	1	22178000	+		85772	34598	59734	59827	95212	95212					0.07214064168465484
VLSLAHLLHL	10	Unmodified	_VLSLAHLLHL_					0	0	0			REV__nc|ENSG00000185433|P58513|LINC00158	REV__nc|ENSG00000185433|P58513|LINC00158	MSMS	OPSCC_40_ClassI_Rep-3	6	558.3280639648438	2	558.350409	1114.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.427	1	99.259	98.759	99.759	-0.16862								0	0	0	0.73832	1	12312	12312		35.618	2.8059	1		+		85773	37014	59735	59828	95213	95213					0.13350874536376978
VLSLKTSLI	9	Unmodified	_VLSLKTSLI_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.263671875	2	487.318243	972.621933	-0.23566	-0.00011484	0.46798	0.00022806	0.23232	0.00011321	487.3182952380403	67.404	1.4642	67.115	66.791	68.255	-0.28834					77	36	3	0	0	0	0.024374	1	7963	7963		49.442	17.487	1	1690900			85774	3186	59736	59829	95214	95214					0.13452674659572494
VLSLKTSLI	9	Unmodified	_VLSLKTSLI_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.318243	972.621933	-0.34618	-0.0001687	0.71846	0.00035012	0.37228	0.00018142	487.3184317593667	67.089	1.4615	67.089	66.755	68.217	0	-0.054423	5.4078E-05	NaN	64.207	95	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1669500			85775	3186	59736	59829							0.13452674659572494
VLSLKTSLI	9	Unmodified	_VLSLKTSLI_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.318243	972.621933	-0.39803	-0.00019397	0.74659	0.00036383	0.34855	0.00016986	487.31844751100533	67.203	1.3486	67.227	66.855	68.203	0.023911	0.083038	8.1494E-05	NaN	64.207	88	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1406000			85776	3186	59736	59829							0.13452674659572494
VLSLLSLEP	9	Unmodified	_VLSLLSLEP_					0	0	0		ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2814025878906	2	485.794601	969.574648	0.086828	4.2181E-05	-0.27548	-0.00013383	-0.18865	-9.1646E-05	485.79447720424065	89.927	1.3641	89.91	89.583	90.948	-0.016708					49	32	2	0	0	0	0.024506	1	11295	11295		30.504	7.4612	1	689900			85777	6826	59737	59830	95215	95215					0.08864395388570756
VLSLPFLAN	9	Unmodified	_VLSLPFLAN_					0	0	0		ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2895202636719	2	487.289485	972.564418	-0.11103	-5.4103E-05	0.13136	6.4008E-05	0.020327	9.9051E-06	487.2894983609172	93.257	1.2939	93.257	92.794	94.088	0					65	30	4	0	0	0	0.78069	1	11831	11831		40.573	3.4135	1	1269400			85778	10308	59738	59831	95216	95216					0.07703832453978521
VLSLPLRIY	9	Unmodified	_VLSLPLRIY_					0	0	0		ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7017211914062	2	537.33951	1072.66447	-0.64552	-0.00034686	0.91995	0.00049433	0.27443	0.00014746	537.3397406237593	89.417	0.68031	89.289	89.079	89.76	-0.12774					34	15	3	0	0	0	0.024262	1	10903	10903		47.916	0	1	270410			85779	1638	59739	59832	95217	95217					0.13104069787800654
VLSLPLRIY	9	Unmodified	_VLSLPLRIY_					0	0	0		ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.701416015625	2	537.33951	1072.66447	-0.48443	-0.0002603	0.87185	0.00046848	0.38743	0.00020818	537.3397691382522	89.5	0.89066	89.362	89.107	89.998	-0.13762					32	20	3	0	0	0	0.024205	1	10894	10894		73.975	29.858	1	250380			85780	1638	59739	59832	95218	95218					0.13104069787800654
VLSLRRRL	8	Unmodified	_VLSLRRRL_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.31585693359375	2	506.840542	1011.66653	0.098402	4.9874E-05	-2.2082	-0.0011192	-2.1098	-0.0010693	506.8384852857366	68.972	0.38452	68.679	68.405	68.789	-0.29267					17	9	2	0	0	0	0.027866	1	8263	8263		17.365	0	1	141120			85781	7857	59740	59833	95219	95219					0.1611654331625232
VLSMFDVN	8	Unmodified	_VLSMFDVN_					0	0	0			REV__nc|ENSG00000107036|Q4ADV7-2|RIC1	REV__nc|ENSG00000107036|Q4ADV7-2|RIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7559814453125	2	462.728403	923.442254	0.1376	6.3672E-05	-1.3118	-0.00060699	-1.1742	-0.00054332	462.7274163170543	40.455	0.37603	40.455	40.247	40.623	0					14	10	2	0	0	0	0.027866	1	3533	3533		31.955	18.18	1	132130	+		85782	36549	59741	59834	95220	95220					-0.022529526198809435
VLSNVEVTL	9	Unmodified	_VLSNVEVTL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.2818908691406	2	487.281857	972.549162	0.35566	0.00017331	-0.58013	-0.00028269	-0.22447	-0.00010938	487.28146286558086	70.158	0.8679	70.158	69.832	70.7	0					41	24	2	0	0	0	0.012965	3	8484	8464;8473;8484		215.39	72.284	1	2464700			85783	9952;677	59742	59835	95221;95222;95223	95223					0.06178920866148019
VLSNVEVTL	9	Unmodified	_VLSNVEVTL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.2811584472656	2	487.281857	972.549162	-0.58347	-0.00028431	0.69067	0.00033655	0.1072	5.2235E-05	487.2819835610659	70.207	0.78154	70.219	70.032	70.813	0.012421					44	20	3	0	0	0	0.012965	3	8406	8393;8397;8406		172.03	28.924	1	2966200			85784	9952;677	59742	59835	95224;95225;95226	95226					0.06178920866148019
VLSNVEVTL	9	Unmodified	_VLSNVEVTL_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	487.281857	972.549162	0.52661	0.00025661	-0.91405	-0.0004454	-0.38744	-0.00018879	487.28108291281535	70.434	0.59949	70.22	69.688	70.288	-0.21424	0.020655	-0.00084481	NaN	172.03	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	800490			85785	9952;677	59742	59835							0.06178920866148019
VLSPADKTNV	10	Unmodified	_VLSPADKTNV_					0	0	0		ENST00000472694.1_1_16:226715-226811:+|nuORF;ENST00000397797.1_1_16:226715-226977:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENST00000472694.1_1_16:226715-226811:+|nuORF	ENST00000472694.1_1_16:226715-226811:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7924194335938	2	522.290214	1042.56587	-0.50097	-0.00026165	0.86525	0.00045191	0.36428	0.00019026	522.79233737002	37.856	0.92707	37.676	37.242	38.17	-0.17929					57	25	5	0	0	0	0.54901	1	3071	3071		82.75	17.285	1	3156200			85786	9727	59743	59836	95227	95227					0.04629421752088092
VLSPADKTNV	10	Unmodified	_VLSPADKTNV_					0	0	0		ENST00000472694.1_1_16:226715-226811:+|nuORF;ENST00000397797.1_1_16:226715-226977:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENST00000472694.1_1_16:226715-226811:+|nuORF	ENST00000472694.1_1_16:226715-226811:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7930297851562	2	522.290214	1042.56587	-0.83475	-0.00043598	1.3304	0.00069487	0.49568	0.00025889	522.2901545581767	37.935	0.76569	37.717	37.384	38.15	-0.21849					55	21	5	0	0	0	0.50091	1	3071	3071		88.177	17.361	1	3021000			85787	9727	59743	59836	95228	95228					0.04629421752088092
VLSPFHPI	8	Unmodified	_VLSPFHPI_					0	0	0		nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;SCN5A|p.G1675Afs*112|1|0.61|ENSG00000183873|chr3:38551348-38551348|C/-|frameshift_variant;ENST00000491944.1_1_3:38656036-38674834:-|nuORF;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant;ENST00000476683.1_1_3:38671674-38674684:-|nuORF	nc|ENSG00000183873|Q14524-5|SCN5A;SCN5A|p.Y1009Tfs*136|1|0.61|ENSG00000183873|chr3:38581135-38581135|G/-|frameshift_variant;ENST00000476683.1_1_3:38671674-38674684:-|nuORF	nc|ENSG00000183873|Q14524-5|SCN5A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.74273681640625	2	455.263271	908.511988	-0.44904	-0.00020443	-4.4036	-0.0020048	-4.8526	-0.0022092	455.2613929981519	43.441	0.64906	43.302	43.137	43.786	-0.13929					21	17	2	0	0	0	0.027866	1	4042	4042		29.842	0	1	142800			85788	9288;37863;15093	59744	59837	95229	95229					0.054072941110462125
VLSQKVVKP	9	Unmodified	_VLSQKVVKP_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3127746582031	2	499.32386	996.633166	0.38604	0.00019276	-0.27224	-0.00013593	0.11381	5.6827E-05	499.32367611671106	75.985	1.0941	75.997	75.681	76.775	0.011635					62	27	3	0	0	0	0.024319	1	9377	9377		66.429	22.312	1	6312300			85789	1266	59745	59838	95230	95230					0.1347149675370929
VLSQTKQDI	9	Unmodified	_VLSQTKQDI_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2898559570312	2	516.290214	1030.56587	-0.54776	-0.00028281	-0.004034	-2.0827E-06	-0.5518	-0.00028489	516.2901986620751	34.133	1.2786	34.133	33.777	35.056	0					83	32	5	0	0	0	0.014738	3	2519	2510;2519;2531		190.26	60.579	1	7013500			85790	9931	59746	59839	95231;95232;95233	95232					0.051814217520814054
VLSQTKQDI	9	Unmodified	_VLSQTKQDI_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2896728515625	2	516.290214	1030.56587	-0.22106	-0.00011413	-0.24297	-0.00012544	-0.46403	-0.00023957	516.2900674413742	33.934	1.2823	33.93	33.486	34.769	-0.0045624					75	32	4	0	0	0	0.015032	3	2479	2469;2479;2491		204.62	73.358	1	7058100			85791	9931	59746	59839	95234;95235;95236	95235					0.051814217520814054
VLSQTKQDI	9	Unmodified	_VLSQTKQDI_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2896118164062	2	516.290214	1030.56587	-0.91535	-0.00047259	0.42838	0.00022117	-0.48697	-0.00025142	516.290425036496	33.934	1.153	33.991	33.615	34.768	0.056572					79	28	5	0	0	0	0.013337	3	2446	2424;2434;2446		195.05	63.033	1	6773400			85792	9931	59746	59839	95237;95238;95239	95239					0.051814217520814054
VLSQTNLVL	9	Unmodified	_VLSQTNLVL_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.7975769042969	2	493.797675	985.580796	0.50681	0.00025026	-1.3474	-0.00066534	-0.84058	-0.00041507	493.79700361881004	51.161	0.75517	51.161	50.845	51.6	0					71	20	5	0	0	0	0.18915	1	5389	5389		90.777	5.6158	1	16397000	+		85793	22909	59747	59840	95240	95240					0.08742913620085346
VLSQTNLVL	9	Unmodified	_VLSQTNLVL_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.79705810546875	2	493.797675	985.580796	-0.43011	-0.00021239	-0.55641	-0.00027476	-0.98652	-0.00048714	493.7973939581735	51.311	0.81356	51.162	50.826	51.64	-0.14916					75	22	5	0	0	0	0.17455	2	5395	5385;5395		94.006	11.009	1	15754000	+		85794	22909	59747	59840	95241;95242	95242					0.08742913620085346
VLSQTNLVL	9	Unmodified	_VLSQTNLVL_					0	0	0			REV__ENSG00000126838|ENST00000261336|PZP	REV__ENSG00000126838|ENST00000261336|PZP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7973937988281	2	493.797675	985.580796	-0.96026	-0.00047417	0.015629	7.7175E-06	-0.94463	-0.00046645	493.79766170345863	51.079	0.85957	51.166	50.785	51.644	0.087006					82	23	5	0	0	0	0.25032	1	5299	5299		82.305	5.5309	1	14376000	+		85795	22909	59747	59840	95243	95243					0.08742913620085346
VLSRKESAL	9	Unmodified	_VLSRKESAL_					0	0	0			REV__ENST00000428135.7_1_7:17831871-17832039:-|nuORF	REV__ENST00000428135.7_1_7:17831871-17832039:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.80352783203125	2	501.800749	1001.58694	-0.12442	-6.2434E-05	3.3823	0.0016972	3.2579	0.0016348	501.80227747186404	57.367	0.49363	57.367	57.073	57.567	0					32	12	3	0	0	0	0.42604	2	6453	6453;6466		64.207	7.4862	1	4063600	+		85796	32314	59748	59841	95244;95245	95244					0.08621431851599937
VLSRPASVL	9	Unmodified	_VLSRPASVL_					0	0	0			REV__ENSG00000178202|ENST00000323468|POGLUT3	REV__ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.2926330566406	2	471.292559	940.570566	0.3653	0.00017216	-0.44603	-0.00021021	-0.080726	-3.8046E-05	471.29235913514	50.39	1.4067	50.238	49.817	51.224	-0.1512					111	40	4	0	0	0	0.42604	1	5239	5239		64.207	0.901	1	27149000	+		85797	27174	59749	59842	95246	95246					0.09790350685523208
VLSRSPVAAL	10	Unmodified	_VLSRSPVAAL_					0	0	0			REV__ENST00000220597.4_1_8:82024143-82024278:-|nuORF	REV__ENST00000220597.4_1_8:82024143-82024278:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.8113708496094	2	506.811116	1011.60768	-0.76083	-0.0003856	-0.20864	-0.00010574	-0.96948	-0.00049134	506.8111194725813	54.608	1.2505	54.608	54.214	55.464	0					119	35	5	0	0	0	0.67706	1	5984	5984		68.787	4.5796	1	40876000	+		85798	29344	59750	59843	95247	95247					0.10234022231270501
VLSRTQIF	8	Unmodified	_VLSRTQIF_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79034050-79057839:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2847900390625	2	482.284734	962.554916	-0.12077	-5.8243E-05	-0.60003	-0.00028938	-0.72079	-0.00034763	482.28451687068633	54.696	1.6493	54.465	54.181	55.83	-0.23087					115	46	5	0	0	0	0.81662	1	5849	5849		57.811	4.4598	1	22178000			85799	7259	59751	59844	95248	95248					0.07214064168465484
VLSRVPGPPL	10	Unmodified	_VLSRVPGPPL_					0	0	0			REV__ENST00000481828.5_1_3:154797714-154801954:+|nuORF	REV__ENST00000481828.5_1_3:154797714-154801954:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.8195190429688	2	517.821484	1033.62842	-1.6951	-0.00087776	-2.517	-0.0013033	-4.2121	-0.0021811	517.8200078149463	91.902	1.1742	91.753	91.268	92.442	-0.1487					75	27	4	0	0	0	1.0781	1	11260	11260		35.618	2.1027	1	1173500	+		85800	33462	59752	59845	95249	95249					0.1129461261095912
VLSRWFIC	8	Unmodified	_VLSRWFIC_					0	0	0		ENST00000326132.10_1_22:31602138-31602333:+|nuORF	ENST00000326132.10_1_22:31602138-31602333:+|nuORF	ENST00000326132.10_1_22:31602138-31602333:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.313720703125	2	512.275855	1022.53716	-0.085537	-4.3819E-05	2.766	0.0014169	2.6804	0.0013731	512.2771386701731	50.374	0.93547	50.223	49.996	50.931	-0.1512					50	27	3	0	0	0	0.027866	1	5279	5279		13.775	0	1	2085900			85801	12278	59753	59846	95250	95250					0.026790256419531033
VLSSAPLLTHL	11	Unmodified	_VLSSAPLLTHL_					0	0	0			REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8431396484375	2	575.845156	1149.67576	-1.2575	-0.00072414	-2.5466	-0.0014665	-3.8042	-0.0021906	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.018	1	11288	11288		32.812	3.6424	1	6251500	+		85802	31612	59754	59847	95251	95251					0.10690847091291289
VLSSAPLLTHL	11	Unmodified	_VLSSAPLLTHL_					0	0	0			REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8428955078125	2	575.845156	1149.67576	-0.15316	-8.8197E-05	-3.6529	-0.0021035	-3.806	-0.0021917	575.8428321284123	88.142	1.3184	88.004	87.122	88.44	-0.13744					76	31	4	0	0	0	0.9749	1	10738	10738		42.396	8.8806	1	544820	+		85803	31612	59754	59847	95252	95252					0.10690847091291289
VLSTRQTF	8	Unmodified	_VLSTRQTF_					0	0	0		AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.2667541503906	2	476.266542	950.51853	0.23064	0.00010985	-0.87967	-0.00041896	-0.64903	-0.00030911	476.2661721293344	31.667	1.3792	31.426	31.073	32.452	-0.24109					107	33	5	0	0	0	0.43637	3	2106	2106;2128;2140		92.191	7.2751	1	26303000			85804	48	59755	59848	95253;95254;95255	95253					0.041291872717465594
VLSTRQTF	8	Unmodified	_VLSTRQTF_					0	0	0		AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2666015625	2	476.266542	950.51853	-0.14156	-6.7422E-05	-0.49715	-0.00023677	-0.63871	-0.0003042	476.2663416797438	31.6	1.9286	31.415	31.023	32.952	-0.18503					131	46	5	0	0	0	0.50239	2	2133	2121;2133		85.359	8.5128	1	21439000			85805	48	59755	59848	95256;95257	95257					0.041291872717465594
VLSTRQTF	8	Unmodified	_VLSTRQTF_					0	0	0		AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	AHDC1|p.A917T|1|0.26|ENSG00000126705|chr1:27549367-27549367|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.266357421875	2	476.266542	950.51853	-0.41395	-0.00019715	-0.25686	-0.00012233	-0.6708	-0.00031948	476.2664642284955	31.629	1.4048	31.476	31.124	32.529	-0.15231					112	34	5	0	0	0	0.50239	3	2103	2103;2115;2127		85.359	8.1716	1	24194000			85806	48	59755	59848	95258;95259;95260	95258					0.041291872717465594
VLSVLRRVP	9	Unmodified	_VLSVLRRVP_					0	0	0			REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.766357421875	2	519.842751	1037.67095	-1.1435	-0.00059441	0.81877	0.00042563	-0.32468	-0.00016878	519.8431577702415	47.313	0.85958	47.372	47.069	47.929	0.059097					65	25	3	0	0	0	0.024381	1	4702	4702		45.952	20.502	1	7636100	+		85807	37036	59756	59849	95261	95261					0.15362007739167893
VLSVLRSVL	9	Unmodified	_VLSVLRSVL_					0	0	0		MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|12|1|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|12|1|anti-sense	MER4B_dup1429|chr15:88940351-88940618:-|1.5143447900640588|0.0058128892937222|8.03|465.0|12|1|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.305419921875	2	493.32386	984.633166	-0.48024	-0.00023691	-4.001	-0.0019738	-4.4812	-0.0022107	493.3220268630226	69.282	0.33469	69.297	69.053	69.388	0.015129					20	8	3	0	0	0	0.024447	1	8255	8255		40.778	11.629	1	508620			85808	17971	59757	59850	95262	95262					0.1402349675371397
VLSVRKVL	8	Unmodified	_VLSVRKVL_					0	0	0		ENST00000473380.1_1_X:11786546-11786591:+|nuORF	ENST00000473380.1_1_X:11786546-11786591:+|nuORF	ENST00000473380.1_1_X:11786546-11786591:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.3125305175781	2	457.313295	912.612037	-1.0544	-0.00048217	0.46745	0.00021377	-0.58691	-0.0002684	457.3134766275095	44.501	1.4861	44.356	44.065	45.551	-0.14471					106	43	4	0	0	0	0.6248	2	4238	4217;4238		73.975	8.1716	1	12904000			85809	15009	59758	59851	95263;95264	95264					0.1522353144483759
VLSWKLVPDN	10	Unmodified	_VLSWKLVPDN_					0	0	0		ENSG00000005302|ENST00000312196|MSL3;nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000224287|P0C860|MSL3B;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3	ENSG00000005302|ENST00000312196|MSL3	ENSG00000005302|ENST00000312196|MSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	585.3117065429688	2	585.829506	1169.64446	-1.832	-0.0010732	-2.3097	-0.0013531	-4.1417	-0.0024263	585.8277767482305	50.321	0.62239	50.321	50.052	50.675	0					50	18	4	0	0	0	0.03519	1	5245	5245		40.058	9.7405	1	1420500			85810	766	59759	59852	95265	95265					0.06642274057207942
VLSWLAIEG	9	Unmodified	_VLSWLAIEG_					0	0	0			REV__ENSG00000163914|ENST00000296271|RHO	REV__ENSG00000163914|ENST00000296271|RHO	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.278564453125	2	494.279118	986.543683	-1.0487	-0.00051833	0.92631	0.00045786	-0.12234	-6.047E-05	494.27948544352836	89.601	0.60027	89.439	89.173	89.774	-0.1626					31	13	3	0	0	0	0.72875	1	10955	10955		44.117	1.6423	1	358760	+		85811	25658	59760	59853	95266	95266					0.04987242074309961
VLTAAAGVFA	10	Unmodified	_VLTAAAGVFA_					0	0	0			REV__nc|ENSG00000123560|P60201-2|PLP1	REV__nc|ENSG00000123560|P60201-2|PLP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	459.274169921875	2	460.26601	918.517468	-0.46956	-0.00021612	3.0032	0.0013823	2.5336	0.0011661	460.267278099205	34.53	0.56381	34.354	34.128	34.692	-0.17557					16	13	2	0	0	0	0.03519	1	2514	2514		23.042	3.6825	1	77137	+		85812	22703	59761	59854	95267	95267					0.05494972902852169
VLTAEPPEHY	10	Unmodified	_VLTAEPPEHY_					0	0	0		nc|ENSG00000180347|Q6ZRS4-3|ITPRID1;ENSG00000180347|ENST00000615280|ITPRID1;nc|ENSG00000180347|Q6ZRS4-4|ITPRID1;nc|ENSG00000180347|Q6ZRS4-2|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.8040161132812	2	578.287671	1154.56079	0.45063	0.0002606	0.27575	0.00015946	0.72638	0.00042006	578.2877546157077	77.111	0.20618	76.843	76.681	76.887	-0.26807					6	4	2	0	0	0	0.03519	1	9143	9143		37.159	5.6293	1	94143			85813	8975	59762	59855	95268	95268					-0.010308821105354582
VLTAIRIY	8	Unmodified	_VLTAIRIY_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B;REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	474.75567626953125	2	474.797478	947.580402	0.033066	1.57E-05	0.043173	2.0499E-05	0.076239	3.6198E-05	474.79735697074597	70.363	0.42982	70.106	69.852	70.282	-0.25713					24	10	3	0	0	0	0.027866	1	8191	8191		65.803	0	1	968480	+		85814	20226;33049	59763	59856	95269	95269					0.10451538690881534
VLTFPYVE	8	Unmodified	_VLTFPYVE_					0	0	0			REV__nc|ENSG00000163565|Q16666-8|IFI16	REV__nc|ENSG00000163565|Q16666-8|IFI16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.3005676269531	2	484.260394	966.506234	-0.25576	-0.00012385	-3.3065	-0.0016012	-3.5622	-0.001725	484.25866987263106	60.154	0.19382	59.978	59.922	60.116	-0.1761					6	4	2	0	0	0	0.027866	1	6706	6706		42.474	7.2737	1	95565	+		85815	25595	59764	59857	95270	95270					0.021641508087100192
VLTFSNLEG	9	Unmodified	_VLTFSNLEG_					0	0	0		ENST00000314686.9_1_3:40518691-40519449:+|nuORF	ENST00000314686.9_1_3:40518691-40519449:+|nuORF	ENST00000314686.9_1_3:40518691-40519449:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.25732421875	2	490.258382	978.502212	-0.31937	-0.00015657	0.36804	0.00018044	0.048678	2.3865E-05	490.25833968779074	75.055	1.2109	75.055	74.34	75.551	0					78	30	4	0	0	0	0.2101	1	9229	9229		87.696	0	1	4507400			85816	12120	59765	59858	95271	95271					0.012100613150096251
VLTGILEQV	9	Unmodified	_VLTGILEQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2921142578125	2	486.292225	970.569897	0.74679	0.00036316	-0.54757	-0.00026628	0.19922	9.6881E-05	486.2917820445947	78.134	0.65578	77.942	77.683	78.339	-0.1921					42	15	3	0	0	0	0.1158	1	9625	9625		107.01	19.253	1	1841700			85817	1401	59766	59859	95272	95272					0.08343511245811897
VLTGILEQV	9	Unmodified	_VLTGILEQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.29248046875	2	486.292225	970.569897	-0.83607	-0.00040658	1.3495	0.00065623	0.51339	0.00024966	486.2926510602458	77.993	0.69963	78.009	77.739	78.438	0.015907					49	16	5	0	0	0	0.03849	1	9564	9564		134.81	17.907	1	1985600			85818	1401	59766	59859	95273	95273					0.08343511245811897
VLTGILEQV	9	Unmodified	_VLTGILEQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	486.292225	970.569897	-0.27371	-0.0001331	0.57383	0.00027905	0.30012	0.00014594	486.2922968399634	78.185	1.1087	77.923	77.571	78.68	-0.26202	-0.0012482	0.00021672	NaN	134.81	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311700			85819	1401	59766	59859							0.08343511245811897
VLTGILEQV	9	Unmodified	_VLTGILEQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	486.292225	970.569897	0.54474	0.0002649	-0.40648	-0.00019767	0.13826	6.7236E-05	486.2919710149628	78.093	0.84888	77.85	77.617	78.465	-0.24232	-0.073818	-0.00073671	NaN	134.81	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363860			85820	1401	59766	59859							0.08343511245811897
VLTGILEQV	9	Unmodified	_VLTGILEQV_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	486.292225	970.569897	0.18603	9.0467E-05	-0.031648	-1.539E-05	0.15439	7.5076E-05	486.29216662140476	78.008	1.1133	77.852	77.575	78.688	-0.15592	-0.071945	-0.00037215	NaN	134.81	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315720			85821	1401	59766	59859							0.08343511245811897
VLTGKKVVQ	9	Unmodified	_VLTGKKVVQ_					0	0	0		nc|ENSG00000156709|O95831-3|AIFM1;ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	nc|ENSG00000156709|O95831-3|AIFM1	nc|ENSG00000156709|O95831-3|AIFM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7488098144531	2	486.316035	970.617516	0.030729	1.4944E-05	0.043046	2.0934E-05	0.073776	3.5878E-05	486.31590384950164	70.012	0.66194	69.761	69.441	70.103	-0.25063					39	15	4	0	0	0	0.024263	1	8143	8143		42.396	8.2236	1	573210			85822	6546	59767	59860	95274	95274					0.13103210236658924
VLTGLSIRL	9	Unmodified	_VLTGLSIRL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.31549072265625	2	486.316035	970.617516	0.023176	1.1271E-05	0.094455	4.5935E-05	0.11763	5.7206E-05	486.3160025972211	69.854	0.48682	69.854	69.506	69.993	0					28	11	3	0	0	0	0.16638	1	8426	8426		95.815	5.4453	1	1328100			85823	5524	59768	59861	95275	95275					0.13103210236658924
VLTGLSIRL	9	Unmodified	_VLTGLSIRL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.3155517578125	2	486.316035	970.617516	-0.7205	-0.00035039	0.94403	0.0004591	0.22353	0.00010871	486.3163587643094	69.841	0.48552	69.853	69.585	70.071	0.012421					34	11	4	0	0	0	0.12914	1	8366	8366		104.06	2.4561	1	1239200			85824	5524	59768	59861	95276	95276					0.13103210236658924
VLTGLVCLW	9	Unmodified	_VLTGLVCLW_					0	0	0			REV__CD27|p.R131Lfs*4|1|0.34|ENSG00000139193|chr12:6450294-6450300|TCGGTCG/-|frameshift_variant	REV__CD27|p.R131Lfs*4|1|0.34|ENSG00000139193|chr12:6450294-6450300|TCGGTCG/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.2934265136719	2	502.285889	1002.55722	0.13734	6.8985E-05	3.3217	0.0016684	3.459	0.0017374	502.28773554947526	82.723	0.43488	82.542	82.244	82.679	-0.18079					13	9	2	0	0	0	0.024443	1	9967	9967		35.201	0	1	131140	+		85825	19272	59769	59862	95277	95277					0.05604776581913029
VLTGNATNEL	10	Unmodified	_VLTGNATNEL_					0	0	0			REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	REV__nc|ENSG00000204969|Q9Y5H9-2|PCDHA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2684936523438	2	516.272021	1030.52949	-0.29821	-0.00015396	-0.52097	-0.00026896	-0.81918	-0.00042292	516.2718386354584	48.919	0.74252	48.919	48.619	49.362	0					72	20	5	0	0	0	0.94316	1	5047	5047		51.193	1.1682	1	39736000	+		85826	37085	59770	59863	95278	95278					0.01544544855391905
VLTILFPI	8	Unmodified	_VLTILFPI_					0	0	0			REV__ENSG00000131477|ENST00000253796|RAMP2	REV__ENSG00000131477|ENST00000253796|RAMP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.24713134765625	2	458.299322	914.584091	-0.91325	-0.00041854	-4.0877	-0.0018734	-5.0009	-0.0022919	458.2973855711888	44.15	0.45259	44.006	43.71	44.162	-0.14471					21	12	3	0	0	0	0.027866	1	4137	4137		35.201	0	1	217160	+		85827	23215	59771	59864	95279	95279					0.12338208464757372
VLTKPLPVT	9	Unmodified	_VLTKPLPVT_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.3125305175781	2	484.312961	966.611368	-0.021439	-1.0383E-05	-0.05842	-2.8294E-05	-0.079859	-3.8677E-05	484.31268608515995	99.524	0.92699	99.534	99.046	99.973	0.010239					54	21	4	0	0	0	0.11092	1	12687	12687		108.09	14.892	1	882620			85828	6206	59772	59865	95280	95280					0.12672692005139652
VLTKPLPVT	9	Unmodified	_VLTKPLPVT_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.31298828125	2	484.312961	966.611368	0.020142	9.7552E-06	-0.69318	-0.00033571	-0.67303	-0.00032596	484.31221817997033	99.631	2.0202	99.626	99.21	101.23	-0.0050888					75	50	3	0	0	0	0.18915	1	12689	12689		90.777	5.4172	1	1132000			85829	6206	59772	59865	95281	95281					0.12672692005139652
VLTKVLKKS	9	Unmodified	_VLTKVLKKS_					0	0	0			REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	REV__nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2817077636719	2	508.347335	1014.68012	0.25011	0.00012715	2.5529	0.0012978	2.803	0.0014249	508.34840425710314	23.461	0.21823	23.259	23.061	23.279	-0.20193					8	4	3	0	0	0	0.024541	1	934	934		34.173	11.13	1	46052	+		85830	23937	59773	59866	95282	95282					0.17336356304861056
VLTLDPETL	9	Unmodified	_VLTLDPETL_					0	0	0		ENST00000447976.1_3_22:30681611-30689721:-|nuORF;ENST00000330168.9_3_22:30681611-30688778:-|nuORF;ENSG00000239282|ENST00000407689|CASTOR1;ENST00000497605.6_1_22:30682689-30683547:-|nuORF;ENST00000418047.5_3_22:30682067-30689721:-|nuORF;ENST00000463795.5_1_22:30682689-30685486:-|nuORF;ENST00000434987.5_3_22:30681611-30689737:-|nuORF	ENST00000447976.1_3_22:30681611-30689721:-|nuORF	ENST00000447976.1_3_22:30681611-30689721:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.30682373046875	2	500.78169	999.548827	-0.41482	-0.00020774	-2.4408	-0.0012223	-2.8556	-0.00143	500.78044342022133	30.641	0.37348	30.716	30.544	30.917	0.074314					11	8	2	0	0	0	0.024487	1	1957	1957		17.365	0	1	42522			85831	10754	59774	59867	95283	95283					0.04903501146293365
VLTLIHVL	8	Unmodified	_VLTLIHVL_					0	0	0			REV__ENSG00000030304|ENST00000374448|MUSK	REV__ENSG00000030304|ENST00000374448|MUSK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	454.3023986816406	2	454.302396	906.590239	-0.13391	-6.0836E-05	0.25357	0.0001152	0.11966	5.436E-05	454.30240875554233	60.384	0.89383	60.384	60.027	60.921	0					68	23	4	0	0	0	0.71717	1	6950	6950		65.897	2.5912	1	5804800	+		85832	20043	59775	59868	95284	95284					0.13320726696281326
VLTLIHVL	8	Unmodified	_VLTLIHVL_					0	0	0			REV__ENSG00000030304|ENST00000374448|MUSK	REV__ENSG00000030304|ENST00000374448|MUSK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.30218505859375	2	454.302396	906.590239	-1.6978	-0.00077133	1.831	0.00083181	0.13311	6.0474E-05	454.3030965930214	60.403	1.1292	60.481	59.974	61.103	0.078888					72	29	4	0	0	0	0.67787	1	6861	6861		69.093	3.1955	1	5922700	+		85833	20043	59775	59868	95285	95285					0.13320726696281326
VLTLIHVL	8	Unmodified	_VLTLIHVL_					0	0	0			REV__ENSG00000030304|ENST00000374448|MUSK	REV__ENSG00000030304|ENST00000374448|MUSK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.3023681640625	2	454.302396	906.590239	-0.1451	-6.5919E-05	0.33212	0.00015088	0.18702	8.4966E-05	454.30239685516165	60.597	0.83844	60.391	60.05	60.889	-0.20599					43	20	3	0	0	0	0.85409	1	6745	6745		54.765	10.234	1	1331100	+		85834	20043	59775	59868	95286	95286					0.13320726696281326
VLTLNNGKL	9	Unmodified	_VLTLNNGKL_					0	0	0		ENSG00000177853|ENST00000316045|ZNF518A;ZNF518A|p.N1204Vfs*6|1|0.09|ENSG00000177853|chr10:96159931-96159932|-/GTCAC|frameshift_variant;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.2971496582031	2	486.297842	970.581131	-0.13158	-6.3987E-05	-0.10854	-5.2783E-05	-0.24012	-0.00011677	486.2977452954503	67.653	0.64139	67.365	67.03	67.671	-0.28835					46	15	4	0	0	0	0.26966	1	8067	8067		79.713	5.4575	1	2846800			85835	8771	59776	59869	95287	95287					0.09466333339958055
VLTMLTNET	9	Unmodified	_VLTMLTNET_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.79608154296875	2	511.26535	1020.51615	-0.46405	-0.00023725	-2.4424	-0.0012487	-2.9064	-0.0014859	511.7652184756755	61.702	0.4877	61.702	61.453	61.941	0					16	12	2	0	0	0	0.024457	1	7169	7169		37.159	15.199	1	908650			85836	5672	59777	59870	95288	95288					0.006709707517643437
VLTNKLLTV	9	Unmodified	_VLTNKLLTV_					0	0	0		ENSG00000165195|ENST00000333590|PIGA	ENSG00000165195|ENST00000333590|PIGA	ENSG00000165195|ENST00000333590|PIGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.30474853515625	2	500.823692	999.632832	0.90961	0.00045556	-1.4596	-0.00073101	-0.55	-0.00027545	500.8226201696202	58.821	0.6585	58.634	58.348	59.007	-0.18705					40	17	3	0	0	0	0.024427	1	6683	6683		26.693	0	1	427880			85837	7379	59778	59871	95289	95289					0.1330007703385263
VLTNRGTLL	9	Unmodified	_VLTNRGTLL_					0	0	0		ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7721252441406	2	493.803291	985.59203	-0.18428	-9.0997E-05	-1.0074	-0.00049744	-1.1916	-0.00058844	493.8025327722034	33.716	0.95425	33.716	33.174	34.129	0					52	25	3	0	0	0	0.024292	1	2396	2396		49.442	7.0454	1	691610			85838	13207	59779	59872	95290	95290					0.09865735714254242
VLTNRGTLL	9	Unmodified	_VLTNRGTLL_					0	0	0		ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.803291	985.59203	0.15236	7.5235E-05	-0.93706	-0.00046272	-0.7847	-0.00038749	493.80267908538195	33.613	0.90621	33.67	33.105	34.012	0.056572	0.10437	-0.00041976	NaN	69.628	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549180			85839	13207	59779	59872							0.09865735714254242
VLTNRGTLL	9	Unmodified	_VLTNRGTLL_					0	0	0		ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.803291	985.59203	-0.47306	-0.0002336	0.48512	0.00023956	0.012064	5.9573E-06	493.80336974435266	33.728	0.52008	33.497	33.153	33.673	-0.23107	-0.06898	0.0009848	NaN	69.628	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236790			85840	13207	59779	59872							0.09865735714254242
VLTNRGTLL	9	Unmodified	_VLTNRGTLL_					0	0	0		ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.803291	985.59203	-0.31909	-0.00015757	0.33263	0.00016426	0.013548	6.6899E-06	493.80328600879193	33.661	0.50945	33.461	33.286	33.795	-0.20019	-0.10505	0.0008342	NaN	69.628	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225890			85841	13207	59779	59872							0.09865735714254242
VLTNRGTLL	9	Unmodified	_VLTNRGTLL_					0	0	0		ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	ENST00000377482.9_1_1:8072006-8072207:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.803291	985.59203	-1.1669	-0.0005762	1.1392	0.00056256	-0.027619	-1.3638E-05	493.8035806429904	33.625	0.59023	33.459	33.278	33.869	-0.16565	-0.1065	0.0016308	NaN	69.628	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195800			85842	13207	59779	59872							0.09865735714254242
VLTPFLNPV	9	Unmodified	_VLTPFLNPV_					0	0	0		ENSG00000230178|ENST00000456475|OR4F3;ENSG00000176269|ENST00000320901|OR4F21	ENSG00000230178|ENST00000456475|OR4F3	ENSG00000230178|ENST00000456475|OR4F3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.6048278808594	2	500.29731	998.580068	-0.3557	-0.00017796	-3.1188	-0.0015603	-3.4745	-0.0017383	500.2954109772226	56.358	0.59808	56.201	55.894	56.492	-0.15655					33	14	3	0	0	0	0.024292	1	6089	6089		40.778	0	1	235680			85843	8629	59780	59873	95291	95291					0.08072118971040254
VLTPKGPVC	9	Unmodified	_VLTPKGPVC_					0	0	0			REV__PCDHA13|p.A733V|1|0.85|ENSG00000239389|chr5:140884466-140884466|C/T|missense_variant	REV__PCDHA13|p.A733V|1|0.85|ENSG00000239389|chr5:140884466-140884466|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2643127441406	2	457.262413	912.510274	0.383	0.00017513	3.8425	0.001757	4.2255	0.0019322	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	0.70186	1	9830	9830		45.952	0	1	4505400	+		85844	37356	59781	59874	95292	95292					0.05051917030777986
VLTPVALEL	9	Unmodified	_VLTPVALEL_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	477.7972106933594	2	477.797143	953.579734	-0.14445	-6.9017E-05	0.73501	0.00035118	0.59056	0.00028217	477.797220551232	96.255	2.049	96.099	95.794	97.843	-0.15646					71	46	2	0	0	0	0.92825	1	11877	11877		30.504	0	1	721640			85845	8285	59782	59875	95293	95293					0.10108699251179587
VLTRDYSIL	9	Unmodified	_VLTRDYSIL_					0	0	0			REV__ENSG00000166908|ENST00000354947|PIP4K2C	REV__ENSG00000166908|ENST00000354947|PIP4K2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2901000976562	2	540.308406	1078.60226	-1.4361	-0.00077593	1.3797	0.00074548	-0.05635	-3.0447E-05	540.3086117785956	53.404	0.43346	53.257	53.023	53.456	-0.14723					19	11	3	0	0	0	0.024523	1	5749	5749		21.96	0	1	681920	+		85846	26078	59783	59876	95294	95294					0.0661029864882039
VLTRMIPLD	9	Unmodified	_VLTRMIPLD_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8242797851562	2	529.307352	1056.60015	-0.55052	-0.0002914	-3.9215	-0.0020757	-4.472	-0.0023671	529.3050864533137	60.933	0.71777	61.005	60.677	61.394	0.071125					28	18	2	0	0	0	0.024523	1	7012	7012		15.642	3.435	1	499350			85847	8954	59784	59877	95295	95295					0.07411546639355038
VLTRPRFRYYL	11	Unmodified	_VLTRPRFRYYL_					0	0	0		nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-2|FAM135B	nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.7929992675781	3	495.289261	1482.84595	0.34089	0.00016884	4.1895	0.002075	4.5304	0.0022439	495.29135186779763	18.633	0.93958	18.43	18.113	19.053	-0.20371					41	18	3	0	0	0	0.024851	1	385	385		19.263	5.7547	1	205770			85848	5992	59785	59878	95296	95296					0.12384382813570483
VLTRPRPHAS	10	Unmodified	_VLTRPRPHAS_					0	0	0		chr1:1042597-1043239|204|13.41|0.19|6.12|+|0|None,AGRN|1	chr1:1042597-1043239|204|13.41|0.19|6.12|+|0|None,AGRN|1	chr1:1042597-1043239|204|13.41|0.19|6.12|+|0|None,AGRN|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3300170898438	2	567.330539	1132.64652	0.053871	3.0563E-05	-0.83373	-0.000473	-0.77986	-0.00044244	567.3299406004519	88.124	1.3605	87.986	87.038	88.398	-0.13744					93	32	4	0	0	0	1.1228	1	10755	10755		22.58	2.5829	1	1828400			85849	268	59786	59879	95297	95297					0.0855074758567298
VLTRSDWNL	9	Unmodified	_VLTRSDWNL_					0	0	0			REV__ENSG00000118508|ENST00000367495|RAB32	REV__ENSG00000118508|ENST00000367495|RAB32	MSMS	OPSCC_40_ClassI_Rep-3	6	552.2943115234375	2	552.29583	1102.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.35	1	97.189	96.689	97.689	-0.16106								0	0	0	0.52604	1	12028	12028		49.442	1.482	1		+		85850	22412	59787	59880	95298	95298					0.029922438462335776
VLTRVLPLL	9	Unmodified	_VLTRVLPLL_					0	0	0			REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.2962646484375	2	512.349877	1022.6852	0.74859	0.00038354	-1.3065	-0.00066937	-0.55787	-0.00028583	512.3490829467652	85.436	0.5441	85.436	85.123	85.667	0					22	12	2	0	0	0	0.024292	1	10734	10734		68.787	0	1	147350	+		85851	20400	59788	59881	95299	95299					0.1747666016748326
VLTRVLPLL	9	Unmodified	_VLTRVLPLL_					0	0	0			REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	REV__ENST00000403534.7_1_19:45250964-45261799:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	512.349877	1022.6852	-0.97533	-0.00049971	0.21914	0.00011228	-0.75619	-0.00038743	512.3497646032241	85.436	0.62155	85.461	85.078	85.699	0.025536	0.067774	0.00047021	NaN	68.787	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127360	+		85852	20400	59788	59881							0.1747666016748326
VLTTKLLCMVL	11	Unmodified	_VLTTKLLCMVL_					0	0	0		ENST00000462119.5_1_6:111621047-111621194:-|nuORF	ENST00000462119.5_1_6:111621047-111621194:-|nuORF	ENST00000462119.5_1_6:111621047-111621194:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.5611572265625	3	411.915156	1232.72364	0.1683	6.9325E-05	0.23296	9.5959E-05	0.40126	0.00016528	411.9152202324344	20.585	0.34471	20.417	20.246	20.591	-0.16774					14	6	3	0	0	0	0.024727	1	578	578		36.318	17.787	1	36841			85853	14699	59789	59882	95300	95300					0.11658461695446931
VLTTLILI	8	Unmodified	_VLTTLILI_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENST00000494614.5_1_3:98520348-98531278:-|nuORF;ENST00000470393.1_1_3:98526911-98531458:-|nuORF	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2922668457031	2	443.304604	884.594655	0.29482	0.00013069	1.8618	0.00082534	2.1566	0.00095603	443.3053105027204	36.918	0.38586	36.855	36.628	37.014	-0.063389					13	9	2	0	0	0	0.027866	1	2971	2971		20.482	0	1	78559			85854	1201	59790	59883	95301	95301					0.14774191119192892
VLVALVAFGR	10	Unmodified	_VLVALVAFGR_					0	0	0			REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|10|2|sense	REV__SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|10|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7313842773438	2	522.831852	1043.64915	-0.65932	-0.00034471	-3.1472	-0.0016454	-3.8065	-0.0019901	522.8300275409168	38.227	0.53205	38.005	37.724	38.256	-0.22149					20	15	2	0	0	0	0.03519	1	3121	3121		16.473	4.2663	1	336430	+		85855	37593	59791	59884	95302	95302					0.1290720299059558
VLVASDGARGL	11	Unmodified	_VLVASDGARGL_					0	0	0			REV__nc|ENSG00000120913|Q96JY6-4|PDLIM2	REV__nc|ENSG00000120913|Q96JY6-4|PDLIM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8239135742188	2	529.303655	1056.59276	-0.45932	-0.00024312	2.9137	0.0015423	2.4544	0.0012991	529.3051541133462	61.262	0.63483	61.047	60.832	61.467	-0.21533					28	16	3	0	0	0	0.024743	1	7092	7092		20.947	0	1	394750	+		85856	22569	59792	59885	95303	95303					0.0667253036326656
VLVCSHPDLS	10	Unmodified	_VLVCSHPDLS_					0	0	0			REV__ENST00000373204.5_1_1:36389579-36389801:+|nuORF	REV__ENST00000373204.5_1_1:36389579-36389801:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.2757568359375	2	535.270967	1068.52738	-0.63333	-0.000339	1.0553	0.00056489	0.422	0.00022588	535.2711331677372	52.353	1.026	52.169	51.998	53.024	-0.18404					51	25	4	0	0	0	0.03519	1	5407	5407		21.96	0	1	628360	+		85857	31243	59793	59886	95304	95304					-0.004142071540854886
VLVCSKEIS	9	Unmodified	_VLVCSKEIS_					0	0	0		nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C;ENST00000481638.1_1_21:33785131-33805466:+|nuORF;nc|ENSG00000166979|P58658-2|EVA1C;ENST00000469079.5_1_21:33785131-33840206:+|nuORF	nc|ENSG00000166979|P58658-3|EVA1C	nc|ENSG00000166979|P58658-3|EVA1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2585144042969	2	489.270435	976.526318	0.677	0.00033124	-3.9978	-0.001956	-3.3208	-0.0016248	489.2685020261893	70.17	0.24656	69.877	69.714	69.96	-0.29292					9	5	2	0	0	0	0.02435	1	8438	8438		34.173	8.5985	1	94022			85858	7638	59794	59887	95305	95305					0.03711578477009425
VLVCSKEIS	9	Unmodified	_VLVCSKEIS_					0	0	0		nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C;ENST00000481638.1_1_21:33785131-33805466:+|nuORF;nc|ENSG00000166979|P58658-2|EVA1C;ENST00000469079.5_1_21:33785131-33840206:+|nuORF	nc|ENSG00000166979|P58658-3|EVA1C	nc|ENSG00000166979|P58658-3|EVA1C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.270435	976.526318	-0.60665	-0.00029682	-2.4922	-0.0012194	-3.0989	-0.0015162	489.2690866993322	70.19	0.62376	69.923	69.536	70.159	-0.26725	0.068077	0.00092086	NaN	34.173	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356190			85859	7638	59794	59887							0.03711578477009425
VLVCSKEIS	9	Unmodified	_VLVCSKEIS_					0	0	0		nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C;ENST00000481638.1_1_21:33785131-33805466:+|nuORF;nc|ENSG00000166979|P58658-2|EVA1C;ENST00000469079.5_1_21:33785131-33840206:+|nuORF	nc|ENSG00000166979|P58658-3|EVA1C	nc|ENSG00000166979|P58658-3|EVA1C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	489.270435	976.526318	0.08185	4.0047E-05	-3.2001	-0.0015657	-3.1182	-0.0015257	489.26870867051025	70.046	0.5793	69.795	69.524	70.103	-0.25063	-0.059223	0.0002282	NaN	34.173	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380090			85860	7638	59794	59887							0.03711578477009425
VLVCSKEIS	9	Unmodified	_VLVCSKEIS_					0	0	0		nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C;ENST00000481638.1_1_21:33785131-33805466:+|nuORF;nc|ENSG00000166979|P58658-2|EVA1C;ENST00000469079.5_1_21:33785131-33840206:+|nuORF	nc|ENSG00000166979|P58658-3|EVA1C	nc|ENSG00000166979|P58658-3|EVA1C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.270435	976.526318	0.3804	0.00018612	-4.1214	-0.0020165	-3.741	-0.0018304	489.2683738073005	70.047	0.56848	69.824	69.597	70.165	-0.22245	-0.030144	-0.00067335	NaN	34.173	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370170			85861	7638	59794	59887							0.03711578477009425
VLVDFVINS	9	Unmodified	_VLVDFVINS_					0	0	0		ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	ENSG00000197403|ENST00000641846|OR6N1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.29315185546875	2	503.2844	1004.55425	-0.51855	-0.00026098	-4.1839	-0.0021057	-4.7025	-0.0023667	503.28311543480794	74.314	0.47182	74.324	74.009	74.481	0.0096512					15	10	2	0	0	0	0.024506	1	8972	8972		30.504	8.8013	1	64000			85862	9991	59795	59888	95306	95306					0.05215224728760859
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.2667541503906	2	473.266207	944.517862	0.7975	0.00037743	-1.5764	-0.00074608	-0.77894	-0.00036865	473.26518680449095	61.17	1.0279	61.17	60.768	61.796	0					58	26	3	0	0	0	0.013094	3	7065	7055;7065;7078		221.33	100.71	1	3263600			85863	1329	59796	59889	95307;95308;95309	95308					0.04338347832026557
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2664489746094	2	473.266207	944.517862	0.54766	0.00025919	-0.52028	-0.00024623	0.027379	1.2957E-05	473.26582679261423	61.398	0.94312	61.171	60.86	61.803	-0.22663					63	24	4	0	0	0	0.013094	3	7066	7066;7080;7094		201.49	96.741	1	3319500			85864	1329	59796	59889	95310;95311;95312	95310					0.04338347832026557
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	473.26702880859375	2	473.266207	944.517862	0.37957	0.00017964	-0.44542	-0.0002108	-0.06585	-3.1165E-05	473.2658975361053	61.101	0.98314	61.172	60.831	61.814	0.071125					63	25	4	0	0	0	0.0085264	4	6966	6966;6977;6988;7002		255.13	139.67	1	4385600			85865	1329	59796	59889	95313;95314;95315;95316	95313					0.04338347832026557
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	473.266207	944.517862	0.17238	8.1579E-05	-0.075305	-3.5639E-05	0.09707	4.594E-05	473.2660121227691	61.476	0.58385	61.263	61.001	61.584	-0.21375	0.033351	3.1854E-05	NaN	255.13	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736450			85866	1329	59796	59889							0.04338347832026557
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	473.266207	944.517862	-0.75176	-0.00035578	0.96488	0.00045665	0.21312	0.00010086	473.2664814485561	61.441	0.73744	61.264	60.955	61.693	-0.1761	0.035149	0.0010164	NaN	255.13	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	927090			85867	1329	59796	59889							0.04338347832026557
VLVDQTTGL	9	Unmodified	_VLVDQTTGL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	473.266207	944.517862	-0.47067	-0.00022275	0.61842	0.00029268	0.14775	6.9927E-05	473.26633221879985	61.593	0.85048	61.336	61.008	61.859	-0.25725	0.10622	0.00068849	NaN	255.13	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1071900			85868	1329	59796	59889							0.04338347832026557
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MSMS	OPSCC_39_ClassI_Rep-1	1	546.3278198242188	2	546.326599	1090.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.214	1	64.214	63.714	64.714	0								0	0	0	0.096778	1	7551	7551		93.143	13.692	1				85869	4618	59797	59890	95317	95317					0.09695175545516577
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MSMS	OPSCC_39_ClassI_Rep-1	1	546.3272094726562	2	546.326599	1090.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.275	1	64.275	63.775	64.775	0								0	0	0	0.49967	1	7561	7561		52.937	0	1				85870	4618	59797	59890	95318	95318					0.09695175545516577
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MSMS	OPSCC_39_ClassI_Rep-2	2	546.3276977539062	2	546.326599	1090.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.506	1	64.243	63.743	64.743	-0.2626								0	0	0	0.31227	1	7563	7563		67.494	14.142	1				85871	4618	59797	59890	95319	95319					0.09695175545516577
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MSMS	OPSCC_39_ClassI_Rep-3	3	546.3270874023438	2	546.326599	1090.63865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.253	1	64.298	63.798	64.798	0.045502								0	0	0	0.12136	1	7477	7477		87.696	25.589	1				85872	4618	59797	59890	95320	95320					0.09695175545516577
VLVDYGFSFY	10	Unmodified	_VLVDYGFSFY_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	604.7513427734375	2	605.294965	1208.57538	-0.023292	-1.4099E-05	2.9258	0.001771	2.9025	0.0017569	605.2966140599688	62.997	1.0062	62.739	62.631	63.637	-0.25824					45	25	2	0	0	0	0.03519	1	7089	7089		47.916	10.756	1	272010			85873	10603	59798	59891	95321	95321					-0.020568099623687885
VLVESEHQV	9	Unmodified	_VLVESEHQV_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.273681640625	2	520.274564	1038.53457	-1.666	-0.00086677	0.60567	0.00031511	-1.0603	-0.00055165	520.2747885707746	38.15	1.0591	38.15	37.702	38.761	0					51	29	3	0	0	0	0.013094	1	3183	3183		171.38	91.446	1	4079400			85874	6943	59799	59892	95322	95322					0.016848487179913718
VLVESEHQV	9	Unmodified	_VLVESEHQV_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2743530273438	2	520.274564	1038.53457	-1.0898	-0.00056701	0.22041	0.00011467	-0.86942	-0.00045234	520.2745199089038	38.097	1.0747	38.014	37.57	38.645	-0.082512					69	29	4	0	0	0	0.013094	1	3160	3160		171.38	91.446	1	3652300			85875	6943	59799	59892	95323	95323					0.016848487179913718
VLVESEHQV	9	Unmodified	_VLVESEHQV_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2737426757812	2	520.274564	1038.53457	-1.9541	-0.0010167	1.2316	0.00064076	-0.7225	-0.0003759	520.2751029077609	38.274	1.1803	38.301	37.817	38.997	0.027279					70	32	3	0	0	0	0.013887	2	3134	3134;3145		180.93	79.325	1	3824900			85876	6943	59799	59892	95324;95325	95324					0.016848487179913718
VLVEVVDVN	9	Unmodified	_VLVEVVDVN_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1;PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000204963|ENST00000525929|PCDHA7	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2870178222656	2	493.281857	984.549162	0.20351	0.00010039	1.4642	0.00072228	1.6677	0.00082267	493.2824230411201	76.241	0.60362	76.252	76.09	76.694	0.011642					19	14	2	0	0	0	0.024541	1	9297	9297		17.365	0	1	152810			85877	8197	59800	59893	95326	95326					0.05626920866143337
VLVEVVDVN	9	Unmodified	_VLVEVVDVN_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1;PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000204963|ENST00000525929|PCDHA7	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.281857	984.549162	-0.052301	-2.5799E-05	0.71268	0.00035155	0.66038	0.00032575	493.28218566838	76.184	0.52376	76.184	76.032	76.556	0	-0.041026	-0.00042023	NaN	24.203	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182430			85878	8197	59800	59893							0.05626920866143337
VLVEVVDVN	9	Unmodified	_VLVEVVDVN_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1;PCDHA7|p.A706Dfs*24|1|0.38|ENSG00000204963|chr5:140836499-140836500|-/A|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000204963|ENST00000525929|PCDHA7	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.281857	984.549162	-0.40813	-0.00020132	0.8772	0.00043271	0.46906	0.00023138	493.28241980691377	76.467	0.59922	76.239	75.927	76.526	-0.22843	0.013765	-0.00025793	NaN	24.203	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172080			85879	8197	59800	59893							0.05626920866143337
VLVFPLLSL	9	Unmodified	_VLVFPLLSL_					0	0	0		ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.3047790527344	2	500.825704	999.636855	-0.32912	-0.00016483	-3.9788	-0.0019927	-4.3079	-0.0021575	500.82355526841934	59.006	0.55431	58.818	58.546	59.1	-0.18795					25	13	3	0	0	0	0.024325	1	6504	6504		40.573	10.255	1	331040			85880	14603	59801	59894	95327	95327					0.13702166527559712
VLVFPLLSL	9	Unmodified	_VLVFPLLSL_					0	0	0		ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENST00000456901.1_1_7:145280818-145281352:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.304443359375	2	500.825704	999.636855	0.25522	0.00012782	-4.3532	-0.0021802	-4.0979	-0.0020524	500.82338730054585	59.032	0.51315	58.791	58.583	59.096	-0.24165					26	12	3	0	0	0	0.024325	1	6486	6486		50.025	7.5501	1	387680			85881	14603	59801	59894	95328	95328					0.13702166527559712
VLVGLLGF	8	Unmodified	_VLVGLLGF_					0	0	0			REV__nc|ENSG00000292348|P14209-2|CD99	REV__nc|ENSG00000292348|P14209-2|CD99	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.5426025390625	2	409.262739	816.510926	0.3402	0.00013923	-4.4418	-0.0018179	-4.1016	-0.0016786	409.260766956576	22.479	0.42006	22.277	22.048	22.468	-0.20199					10	8	2	0	0	0	0.027866	1	747	747		33.493	0	1	36939	+		85882	19763	59802	59895	95329	95329					0.09533079742141126
VLVGSFSASL	10	Unmodified	_VLVGSFSASL_					0	0	0		ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2745361328125	2	490.276575	978.538597	-0.90452	-0.00044346	-2.6219	-0.0012855	-3.5264	-0.0017289	490.2750858074762	75.536	1.0746	75.536	75.194	76.268	0					90	28	4	0	0	0	0.47726	1	9264	9264		90.777	5.8611	1	10852000			85883	9347	59803	59896	95330	95330					0.04846938211710494
VLVGSFSASL	10	Unmodified	_VLVGSFSASL_					0	0	0		ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2767028808594	2	490.276575	978.538597	-0.44078	-0.00021611	-3.0523	-0.0014965	-3.493	-0.0017126	490.274863199453	75.777	0.99203	75.532	75.191	76.183	-0.24455					83	26	4	0	0	0	0.3934	1	9252	9252		99.375	3.1845	1	11390000			85884	9347	59803	59896	95331	95331					0.04846938211710494
VLVGSFSASL	10	Unmodified	_VLVGSFSASL_					0	0	0		ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2759704589844	2	490.276575	978.538597	0.082561	4.0478E-05	-3.7554	-0.0018412	-3.6729	-0.0018007	490.2746491718579	75.545	0.877	75.556	75.25	76.127	0.010376					69	23	4	0	0	0	0.30843	1	9181	9181		108.09	14.892	1	12327000			85885	9347	59803	59896	95332	95332					0.04846938211710494
VLVGWAGT	8	Unmodified	_VLVGWAGT_					0	0	0			REV__ENSG00000144045|ENST00000404568|DQX1;REV__ENST00000473508.1_1_2:74750418-74753390:-|nuORF	REV__ENSG00000144045|ENST00000404568|DQX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.5721435546875	2	401.726521	801.438489	0.6779	0.00027233	-0.10473	-4.2074E-05	0.57316	0.00023026	401.726462115295	33.631	0.42501	33.431	33.209	33.634	-0.20019					15	10	2	0	0	0	0.027866	1	2387	2387		13.775	0	1	112800	+		85886	24310;33237	59804	59897	95333	95333					0.029827456685552534
VLVHLLSAI	9	Unmodified	_VLVHLLSAI_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2792053222656	2	482.813128	963.611703	0.42192	0.00020371	0.033657	1.625E-05	0.45558	0.00021996	482.812757234055	67.686	0.65175	67.686	67.45	68.102	0					29	16	2	0	0	0	0.024517	1	8071	8071		19.36	11.129	1	430960			85887	1058	59805	59898	95334	95334					0.1284411172498494
VLVHLTGQT	9	Unmodified	_VLVHLTGQT_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.301025390625	2	484.282192	966.549831	0.29686	0.00014377	-0.048448	-2.3463E-05	0.24842	0.0001203	484.2820241603854	54.292	1.6276	54.39	53.521	55.148	0.098015					121	46	4	0	0	0	0.024294	1	5930	5930		29.15	0	1	5478400			85888	3722	59806	59899	95335	95335					0.06521760305861335
VLVHTRSK	8	Unmodified	_VLVHTRSK_					0	0	0		ENSG00000142609|ENST00000682832|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.22760009765625	2	470.290351	938.566149	-1.5463	-0.00072722	1.3744	0.00064635	-0.17196	-8.087E-05	470.2908605482495	33.897	0.73783	33.722	33.43	34.168	-0.17557					34	18	3	0	0	0	0.027866	1	2405	2405		3.41	0.48058	1	529180			85889	5574	59807	59900	95336	95336					0.09440886262598269
VLVHTRSK	8	Unmodified	_VLVHTRSK_					0	0	0		ENSG00000142609|ENST00000682832|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	ENSG00000142609|ENST00000682832|CFAP74	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	470.290351	938.566149	-0.13518	-6.3574E-05	-0.11146	-5.2419E-05	-0.24664	-0.00011599	470.2902210540108	33.924	0.57056	33.719	33.399	33.97	-0.20482	-0.0010451	-0.00069456	NaN	10.866	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397880			85890	5574	59807	59900							0.09440886262598269
VLVIERCGGV	10	Unmodified	_VLVIERCGGV_					0	0	0			REV__ENST00000311177.6_1_17:46698590-46699007:-|nuORF	REV__ENST00000311177.6_1_17:46698590-46699007:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	522.796875	2	522.797152	1043.57975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.236	1	36.019	35.519	36.519	-0.21661								0	0	0	0.76217	1	2820	2820		49.536	8.9634	1		+		85891	30201	59808	59901	95337	95337					0.05970375979518394
VLVIYPTNQ	9	Unmodified	_VLVIYPTNQ_					0	0	0		ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	ENSG00000092068|ENST00000316902|SLC7A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2584228515625	2	523.797675	1045.5808	0.071744	3.758E-05	-4.1231	-0.0021597	-4.0514	-0.0021221	523.7943417279704	26.048	0.40754	26.129	25.924	26.331	0.081291					22	9	3	0	0	0	0.024523	1	1254	1254		29.15	0	1	154710			85892	1978	59809	59902	95338	95338					0.059829136200733046
VLVKKKDM	8	Unmodified	_VLVKKKDM_					0	0	0			REV__ENST00000581764.1_1_17:61907183-61907321:+|nuORF	REV__ENST00000581764.1_1_17:61907183-61907321:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.8013610839844	2	480.799163	959.583773	-0.09375	-4.5075E-05	3.1194	0.0014998	3.0257	0.0014547	480.80055226574177	94.208	2.7272	94.208	93.75	96.477	-0.00022888					182	64	6	0	0	0	1.0516	1	12048	12048		29.15	2.3535	1	24672000	+		85893	20791	59810	59903	95339	95339					0.10236465473246881
VLVKKKKK	8	Unmodified	_VLVKKKKK_					0	0	0			REV__ENSG00000185056|ENST00000340147|C5orf47	REV__ENSG00000185056|ENST00000340147|C5orf47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.7769775390625	2	485.860412	969.706272	-1.4535	-0.00070619	-2.275	-0.0011053	-3.7285	-0.0018115	485.8576151553783	29.847	0.24365	29.847	29.692	29.936	0					9	5	2	0	0	0	0.027866	1	1871	1871		1.619	0	1	26520	+		85894	27731	59811	59904	95340	95340					0.2202067026697705
VLVKPVGP	8	Unmodified	_VLVKPVGP_					0	0	0			REV__ENSG00000179403|ENST00000476993|VWA1	REV__ENSG00000179403|ENST00000476993|VWA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.16998291015625	2	404.768189	807.521825	0.69002	0.0002793	-0.53897	-0.00021816	0.15105	6.114E-05	404.7678772264415	76.052	0.66445	75.793	75.557	76.221	-0.25866					22	16	2	0	0	0	0.027866	1	9026	9026		35.201	9.7505	1	125640	+		85895	27264	59812	59905	95341	95341					0.1103648211642394
VLVLHEKKD	9	Unmodified	_VLVLHEKKD_					0	0	0			REV__ENSG00000120318|ENST00000239440|ARAP3	REV__ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.33447265625	2	540.824224	1079.63389	0.0046591	2.5198E-06	-1.9633	-0.0010618	-1.9586	-0.0010593	540.8230986637748	79.12	0.16824	78.865	78.729	78.898	-0.25471					5	3	2	0	0	0	0.024205	1	9435	9435		53.351	10.955	1	43224	+		85896	22523	59813	59906	95342	95342					0.09726291402762399
VLVLKIRPQ	9	Unmodified	_VLVLKIRPQ_					0	0	0		ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENST00000534591.1_1_11:64876790-64877821:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7977905273438	2	533.360776	1064.707	-0.074374	-3.9668E-05	-2.6511	-0.001414	-2.7255	-0.0014537	533.861565848083	55.175	0.30468	55.175	55.014	55.319	0					18	8	3	0	0	0	0.024487	1	6081	6081		31.955	6.3808	1	175350			85897	16334	59814	59907	95343	95343					0.17723464916025478
VLVLKIRPQTN	11	Unmodified	_VLVLKIRPQTN_					0	0	0		ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENST00000534591.1_1_11:64876790-64877821:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.2647705078125	3	427.606478	1279.79761	0.015691	6.7096E-06	3.5405	0.0015139	3.5562	0.0015206	427.6081773756552	54.4	0.18253	54.25	54.12	54.302	-0.15036					7	4	2	0	0	0	0.024767	1	5905	5905		25.068	12.635	1	135160			85898	16334	59815	59908	95344	95344					0.16889889173648953
VLVLSAYTI	9	Unmodified	_VLVLSAYTI_					0	0	0			REV__ENSG00000127412|ENST00000265310|TRPV5	REV__ENSG00000127412|ENST00000265310|TRPV5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.2997131347656	2	489.797143	977.579734	-0.43511	-0.00021312	1.2332	0.00060401	0.79807	0.00039089	489.794659557829	67.065	1.0843	66.783	66.555	67.639	-0.28148					60	26	4	0	0	0	0.75282	1	7958	7958		42.474	1.9018	1	1259300	+		85899	22928	59816	59909	95345	95345					0.09004699251181592
VLVMNDEHT	9	Unmodified	_VLVMNDEHT_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.2825927734375	2	529.252774	1056.491	-1.1306	-0.00059837	2.0206	0.0010694	0.89	0.00047104	529.253894023747	24.402	0.35353	24.402	24.209	24.563	0					10	7	2	0	0	0	0.024541	1	1041	1041		12.207	0	1	17517			85900	7239	59817	59910	95346	95346					-0.034990840507816756
VLVNFPSKL	9	Unmodified	_VLVNFPSKL_					0	0	0			REV__ENST00000344337.10_1_3:122140911-122141163:-|nuORF	REV__ENST00000344337.10_1_3:122140911-122141163:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.7665100097656	2	508.810585	1015.60662	-0.39691	-0.00020195	-3.4045	-0.0017323	-3.8015	-0.0019342	509.31222923755894	22.772	0.13737	22.696	22.602	22.739	-0.075296					4	2	2	0	0	0	0.024477	1	811	811		35.618	0	1	7851.7	+		85901	30680	59818	59911	95347	95347					0.09943807862362064
VLVPACLQGLP	11	Unmodified	_VLVPACLQGLP_					0	0	0		ENST00000316097.12_1_19:1918171-1918902:+|nuORF	ENST00000316097.12_1_19:1918171-1918902:+|nuORF	ENST00000316097.12_1_19:1918171-1918902:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.300537109375	2	555.323002	1108.63145	0.18086	0.00010043	0.57958	0.00032185	0.76044	0.00042229	555.3233524792934	46.483	0.49938	46.483	46.273	46.772	0					16	13	2	0	0	0	0.024752	1	4581	4581		49.442	3.4896	1	146210			85902	12145	59819	59912	95348	95348					0.0814811967343303
VLVPLLKP	8	Unmodified	_VLVPLLKP_					0	0	0		ENST00000332180.9_1_12:105527636-105531712:+|nuORF	ENST00000332180.9_1_12:105527636-105531712:+|nuORF	ENST00000332180.9_1_12:105527636-105531712:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	439.2520751953125	2	439.807314	877.600075	-1.2815	-0.00056361	1.2242	0.00053839	-0.057332	-2.5215E-05	439.80779430119077	90.494	0.53766	90.339	90.022	90.56	-0.1552					18	12	2	0	0	0	0.027866	1	11044	11044		4.3163	0	1	103450			85903	12352	59820	59913	95349	95349					0.15637914701665068
VLVPPPPSQ	9	Unmodified	_VLVPPPPSQ_					0	0	0		ENST00000371521.8_3_9:140111080-140111233:+|nuORF	ENST00000371521.8_3_9:140111080-140111233:+|nuORF	ENST00000371521.8_3_9:140111080-140111233:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	467.25604248046875	2	467.273835	932.533118	0.96744	0.00045206	-1.6665	-0.0007787	-0.69904	-0.00032664	467.2730108718712	76.744	0.36974	76.757	76.448	76.818	0.013504					13	8	2	0	0	0	0.024381	1	9385	9385		45.952	17.698	1	133770			85904	13000	59821	59914	95350	95350					0.06415259419895847
VLVPTHFEW	9	Unmodified	_VLVPTHFEW_					0	0	0		nc|ENSG00000167711|P08697-2|SERPINF2;ENSG00000167711|ENST00000453066|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.3177490234375	2	564.297842	1126.58113	-0.3336	-0.00018825	4.4462	0.002509	4.1126	0.0023207	564.3000692631559	61.725	0.84047	61.468	61.217	62.058	-0.25725					36	20	3	0	0	0	0.024262	1	6949	6949		57.811	13.434	1	333010			85905	7728	59822	59915	95351	95351					0.02290333339942663
VLVPYEPPQV	10	Unmodified	_VLVPYEPPQV_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8186645507812	2	570.818607	1139.62266	-0.15014	-8.5702E-05	0.14651	8.3632E-05	-0.0036262	-2.0699E-06	570.8185328032396	74.747	1.0131	74.747	74.256	75.269	0					69	24	4	0	0	0	0.52765	2	9168	9143;9168		85.161	18.732	1	4676500			85906	1504	59823	59916	95352;95353	95353					0.0584346930859283
VLVPYEPPQV	10	Unmodified	_VLVPYEPPQV_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.81884765625	2	570.818607	1139.62266	-0.0012246	-6.9903E-07	-0.054374	-3.1038E-05	-0.055598	-3.1737E-05	570.8184228443282	75.009	1.0745	74.75	74.285	75.36	-0.25887					85	26	5	0	0	0	0.52982	2	9167	9155;9167		84.916	2.675	1	4304000			85907	1504	59823	59916	95354;95355	95355					0.0584346930859283
VLVPYEPPQV	10	Unmodified	_VLVPYEPPQV_					0	0	0		nc|ENSG00000073282|Q9H3D4-2|TP63;ENSG00000073282|ENST00000264731|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;chr3:189872995-189880064|491|15.24|0.81|4.23|+|ENST00000437221|TP63,TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-10|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	nc|ENSG00000073282|Q9H3D4-2|TP63	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.81884765625	2	570.818607	1139.62266	-0.91076	-0.00051988	0.84435	0.00048197	-0.066416	-3.7912E-05	570.8189258378085	74.798	1.1221	74.808	74.313	75.435	0.010368					85	27	5	0	0	0	0.55353	2	9084	9074;9084		82.241	9.3613	1	4241700			85908	1504	59823	59916	95356;95357	95357					0.0584346930859283
VLVQFPVGL	9	Unmodified	_VLVQFPVGL_					0	0	0			REV__ENST00000593706.3_1_19:50365412-50367307:-|nuORF	REV__ENST00000593706.3_1_19:50365412-50367307:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.77099609375	2	486.299853	970.585153	-0.02753	-1.3388E-05	-1.7044	-0.00082886	-1.732	-0.00084225	486.2989741222313	72.635	0.36375	72.635	72.292	72.656	0					12	8	2	0	0	0	0.024412	1	8831	8831		31.955	0	1	1118800	+		85909	20086	59824	59917	95358	95358					0.09868422833653767
VLVRAGEVL	9	Unmodified	_VLVRAGEVL_					0	0	0		ENST00000460427.2_1_2:98275340-98276060:-|nuORF	ENST00000460427.2_1_2:98275340-98276060:-|nuORF	ENST00000460427.2_1_2:98275340-98276060:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.3012390136719	2	478.300384	954.586216	-0.27503	-0.00013155	-0.011226	-5.3692E-06	-0.28625	-0.00013692	478.3002707499594	33.313	0.78069	33.113	32.813	33.594	-0.20019					45	19	4	0	0	0	0.31247	1	2388	2388		73.975	8.1716	1	4868800			85910	14654	59825	59918	95359	95359					0.10710637202555517
VLVRAGSSLV	10	Unmodified	_VLVRAGSSLV_					0	0	0			REV__ENSG00000083807|ENST00000263093|SLC27A5	REV__ENSG00000083807|ENST00000263093|SLC27A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.8109130859375	2	500.811116	999.60768	-1.5959	-0.00079922	1.1237	0.00056276	-0.47217	-0.00023647	500.81159743921705	38.354	0.83333	38.381	38.127	38.96	0.027275					43	22	2	0	0	0	1.0665	1	3152	3152		37.159	4.3467	1	3109600	+		85911	20722	59826	59919	95360	95360					0.10786022231275183
VLVRGLVL	8	Unmodified	_VLVRGLVL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.80242919921875	2	434.802563	867.590573	-0.67817	-0.00029487	0.83446	0.00036283	0.15629	6.7957E-05	434.8027786390961	65.961	0.99223	65.748	65.421	66.414	-0.21327					63	24	4	0	0	0	0.85409	1	7538	7538		54.765	0	1	3002400			85912	2625	59827	59920	95361	95361					0.15148146416129293
VLVRHVDQS	9	Unmodified	_VLVRHVDQS_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	526.2820434570312	2	526.795998	1051.57744	0.38727	0.00020401	3.7586	0.00198	4.1459	0.002184	526.7975824360223	63.471	0.4346	63.212	62.917	63.352	-0.25824					16	10	2	0	0	0	0.024447	1	7135	7135		32.812	1.2826	1	216500	+		85913	24671	59828	59921	95362	95362					0.05371663566097595
VLVRLWRG	8	Unmodified	_VLVRLWRG_					0	0	0		nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.8109130859375	2	499.816536	997.618519	-1.6077	-0.00080354	-0.19719	-9.8559E-05	-1.8049	-0.0009021	499.8160507437928	38.307	0.40377	38.334	38.092	38.496	0.027279					17	11	2	0	0	0	0.027866	1	3152	3152		20.482	7.5226	1	85409			85914	18078	59829	59922	95363	95363					0.11961469396214852
VLVRSTETV	9	Unmodified	_VLVRSTETV_					0	0	0		ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	ENSG00000094631|ENST00000334136|HDAC6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.2926330566406	2	502.292756	1002.57096	-0.81202	-0.00040787	-0.062954	-3.1621E-05	-0.87497	-0.00043949	502.2926760928546	39.196	0.785	39.22	38.956	39.741	0.023727					62	21	4	0	0	0	0.20967	1	3308	3308		87.754	2.5935	1	4695500			85915	2006	59830	59923	95364	95364					0.06977725614729025
VLVSELGAGR	10	Unmodified	_VLVSELGAGR_					0	0	0		ENST00000353332.9_1_3:9691169-9691235:+|nuORF	ENST00000353332.9_1_3:9691169-9691235:+|nuORF	ENST00000353332.9_1_3:9691169-9691235:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.7784729003906	2	500.792924	999.571294	0.035729	1.7893E-05	-3.1639	-0.0015845	-3.1282	-0.0015666	500.79142240473055	64.027	0.36411	63.776	63.659	64.023	-0.25141					11	9	2	0	0	0	0.03519	1	7508	7508		54.776	0	1	163040			85916	12612	59831	59924	95365	95365					0.07149145334562945
VLVSFVDGR	9	Unmodified	_VLVSFVDGR_					0	0	0			REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	REV__nc|ENSG00000168743|Q6UXI9-2|NPNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	496.2655944824219	2	496.282192	990.549831	0.14713	7.3017E-05	-3.0305	-0.001504	-2.8833	-0.0014309	496.27819046606965	37.27	0.45089	37.302	37.112	37.563	0.032269					19	11	2	0	0	0	0.023417	1	3004	3004		49.442	3.4896	1	130230	+		85917	36909	59832	59925	95366	95366					0.054177603058633395
VLVSGGRPLI	10	Unmodified	_VLVSGGRPLI_					0	0	0			REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.2657165527344	2	505.821484	1009.62842	-0.079209	-4.0066E-05	-0.78934	-0.00039927	-0.86855	-0.00043933	505.82099581887115	62.619	0.53843	62.681	62.401	62.94	0.062763					26	12	3	0	0	0	0.03519	1	7225	7225		39.253	0	1	653590	+		85918	20870	59833	59926	95367	95367					0.12398612610945747
VLVSVFSFDK	10	Unmodified	_VLVSVFSFDK_					0	0	0			REV__ENSG00000251247|ENST00000420450|ZNF345	REV__ENSG00000251247|ENST00000420450|ZNF345	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8187255859375	2	570.818607	1139.62266	-0.15014	-8.5702E-05	0.14651	8.3632E-05	-0.0036262	-2.0699E-06	570.8185328032396	74.747	1.0131	74.747	74.256	75.269	0					69	24	4	0	0	0	0.88896	1	9155	9155		54.776	0	1	4676500	+		85919	29031	59834	59927	95368	95368					0.058434693086155676
VLVSVFSFDK	10	Unmodified	_VLVSVFSFDK_					0	0	0			REV__ENSG00000251247|ENST00000420450|ZNF345	REV__ENSG00000251247|ENST00000420450|ZNF345	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.8187255859375	2	570.818607	1139.62266	-0.0012246	-6.9903E-07	-0.054374	-3.1038E-05	-0.055598	-3.1737E-05	570.8184228443282	75.009	1.0745	74.75	74.285	75.36	-0.25887					85	26	5	0	0	0	0.52982	1	9180	9180		84.916	5.2029	1	4304000	+		85920	29031	59834	59927	95369	95369					0.058434693086155676
VLVTLLITVY	10	Unmodified	_VLVTLLITVY_					0	0	0			REV__ENSG00000179817|ENST00000314254|MRGPRX4	REV__ENSG00000179817|ENST00000314254|MRGPRX4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2683715820312	2	567.36265	1132.71075	-0.039525	-2.2425E-05	1.6859	0.00095652	1.6464	0.00093409	567.3635084326755	45.648	1.6158	45.551	44.752	46.368	-0.096653					104	44	3	0	0	0	0.03519	1	4434	4434		10.265	0	1	1789300	+		85921	27293	59835	59928	95370	95370					0.1497008989922506
VLVTLSYT	8	Unmodified	_VLVTLSYT_					0	0	0		ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	ENSG00000179626|ENST00000641569|OR6C4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.2589111328125	2	448.260394	894.506234	0.74944	0.00033594	-3.8922	-0.0017447	-3.1428	-0.0014088	448.2585106257318	89.09	1.8304	89.069	88.61	90.44	-0.021645					94	43	4	0	0	0	0.96719	1	11199	11199		42.474	1.9018	1	7259500			85922	8911	59836	59929	95371	95371					0.05476150808715374
VLVTQKLP	8	Unmodified	_VLVTQKLP_					0	0	0		nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.2919616699219	2	449.292028	896.569503	-0.39132	-0.00017582	0.5968	0.00026814	0.20548	9.232E-05	449.29213448868916	57.419	1.0117	57.186	56.652	57.664	-0.23363					56	26	3	0	0	0	0.21344	1	6257	6257		138.24	3.4315	1	2061000			85923	6367	59837	59930	95372	95372					0.11708136316599393
VLVVEMVVV	9	Unmodified	_VLVVEMVVV_					0	0	0			REV__ENST00000599047.1_1_19:42334540-42334855:+|nuORF	REV__ENST00000599047.1_1_19:42334540-42334855:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.78509521484375	2	493.801371	985.58819	0.045157	2.2299E-05	3.0178	0.0014902	3.0629	0.0015125	493.8021098062461	47.645	0.43852	47.492	47.231	47.669	-0.15301					15	12	2	0	0	0	0.024443	1	4779	4779		19.36	0	1	177880	+		85924	35825	59838	59931	95373	95373					0.09481929896162455
VLVVKGPK	8	Unmodified	_VLVVKGPK_					0	0	0			REV__ENST00000587478.1_1_17:41150475-41150953:+|nuORF	REV__ENST00000587478.1_1_17:41150475-41150953:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	420.7037658691406	2	420.289288	838.564024	-0.9705	-0.00040789	1.1386	0.00047855	0.16811	7.0656E-05	420.28974644721893	33.716	0.66163	33.54	33.311	33.972	-0.17557					30	16	3	0	0	0	0.027866	1	2409	2409		7.6903	3.0085	1	293180	+		85925	23213	59839	59932	95374	95374					0.13828457524800797
VLVWAFFAV	9	Unmodified	_VLVWAFFAV_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF	ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7659301757812	2	526.302396	1050.59024	-1.4721	-0.00077476	4.034	0.0021231	2.562	0.0013484	526.3044662439354	31.266	0.58733	31.266	31.003	31.591	0					22	13	2	0	0	0	0.024475	1	2040	2040		39.021	8.7038	1	577130			85926	6875;2678	59840	59933	95375	95375					0.06696726696259248
VLVWLNRGK	9	Unmodified	_VLVWLNRGK_					0	0	0			REV__ENSG00000135678|ENST00000551568|CPM	REV__ENSG00000135678|ENST00000551568|CPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.311767578125	2	542.834926	1083.6553	0.079797	4.3317E-05	-0.38513	-0.00020906	-0.30533	-0.00016575	542.8346421508029	70.406	0.36031	70.406	70.209	70.569	0					14	8	2	0	0	0	0.024535	1	8529	8529		12.207	0	1	1754100	+		85927	23568	59841	59934	95376	95376					0.11681721222134911
VLWCSAQEL	9	Unmodified	_VLWCSAQEL_					0	0	0		ENST00000566637.5_1_16:88776385-88780917:+|nuORF;nc|ENSG00000174177|Q2VPK5-3|CTU2;nc|ENSG00000174177|Q2VPK5-5|CTU2;ENSG00000174177|ENST00000453996|CTU2	ENST00000566637.5_1_16:88776385-88780917:+|nuORF	ENST00000566637.5_1_16:88776385-88780917:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2901000976562	2	524.760235	1047.50592	-0.095116	-4.9913E-05	3.4251	0.0017973	3.3299	0.0017474	524.7620364666506	72.056	0.73489	71.78	71.549	72.284	-0.27509					29	17	2	0	0	0	0.024292	1	8414	8414		58.782	19.529	1	322640			85928	8448	59842	59935	95377	95377					-0.015935921828031496
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.31201171875	2	568.808574	1135.60259	-0.29208	-0.00016614	4.2664	0.0024268	3.9743	0.0022606	568.8087103479095	76.88	1.1559	76.88	76.556	77.712	0					36	27	2	0	0	0	0.17845	3	9502	9486;9502;9510		93.143	32.849	1	2175200			85929	3443	59843	59936	95378;95379;95380	95379					0.04021718368676375
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.3139038085938	2	568.808574	1135.60259	-0.41122	-0.00023391	2.7603	0.0015701	2.3491	0.0013362	568.8087659695697	77.037	1.0393	76.816	76.575	77.614	-0.22134					70	24	4	0	0	0	0.20652	3	9484	9467;9484;9509		88.177	16.299	1	2201500			85930	3443	59843	59936	95381;95382;95383	95382					0.04021718368676375
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.314453125	2	568.808574	1135.60259	-0.59373	-0.00033772	3.8602	0.0021957	3.2665	0.001858	569.3152454142521	76.932	1.2057	76.945	76.613	77.819	0.013496					77	28	4	0	0	0	0.18994	1	9433	9433		90.601	19.223	1	2231100			85931	3443	59843	59936	95384	95384					0.04021718368676375
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.8085327148438	2	568.808574	1135.60259	0.48274	0.00027459	-0.26787	-0.00015237	0.21487	0.00012222	568.8081824126106	77.053	1.6899	76.785	76.467	78.157	-0.26806					101	40	5	0	0	0	0.01388	5	9133	9125;9133;9145;9157;9169		180.87	73.862	1	18838000			85932	3443	59843	59936	95385;95386;95387;95388;95389	95386					0.04021718368676375
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.808349609375	2	568.808574	1135.60259	0.63416	0.00036071	-0.41515	-0.00023614	0.219	0.00012457	568.8080441133784	76.971	1.757	76.72	76.356	78.113	-0.25162					102	42	5	0	0	0	0.041068	5	9161	9137;9149;9161;9174;9186		132.76	39.562	1	17149000			85933	3443	59843	59936	95390;95391;95392;95393;95394	95392					0.04021718368676375
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.80859375	2	568.808574	1135.60259	-0.27544	-0.00015667	-0.18394	-0.00010463	-0.45938	-0.0002613	568.8084867971884	76.84	1.8493	76.672	76.266	78.115	-0.16854					89	43	5	0	0	0	0.016542	6	9128	9093;9104;9116;9128;9141;9153		154.12	60.923	1	16029000			85934	3443	59843	59936	95395;95396;95397;95398;95399;95400	95398					0.04021718368676375
VLWECQIR	8	Unmodified	_VLWECQIR_					0	0	0			REV__ENST00000550614.5_2_14:105455660-105455831:+|nuORF	REV__ENST00000550614.5_2_14:105455660-105455831:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2885131835938	2	523.776219	1045.53789	-1.6155	-0.00084614	-2.7665	-0.001449	-4.3819	-0.0022951	524.2756124882003	28.98	0.34744	28.735	28.448	28.796	-0.24524					13	7	2	0	0	0	0.027866	1	1705	1705		40.573	8.6178	1	38636	+		85935	34913	59844	59937	95401	95401					0.016938202909841493
VLWECQIR	8	Unmodified	_VLWECQIR_					0	0	0			REV__ENST00000550614.5_2_14:105455660-105455831:+|nuORF	REV__ENST00000550614.5_2_14:105455660-105455831:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	523.776219	1045.53789	-0.41674	-0.00021828	-3.005	-0.0015739	-3.4217	-0.0017922	523.7743187333926	28.739	0.34444	28.57	28.467	28.812	-0.16897	-0.082554	-6.7871E-05	NaN	40.573	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37750	+		85936	34913	59844	59937							0.016938202909841493
VLWGSPAASD	10	Unmodified	_VLWGSPAASD_					0	0	0		nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4;ENST00000468472.1_1_3:52847439-52852236:-|nuORF	nc|ENSG00000055955|Q14624-4|ITIH4	nc|ENSG00000055955|Q14624-4|ITIH4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	501.2905578613281	2	501.748182	1001.48181	0.77481	0.00038876	-1.3859	-0.00069536	-0.61108	-0.00030661	501.74734064998233	98.51	0.4892	98.374	98.147	98.636	-0.13625					15	10	2	0	0	0	0.03519	1	12165	12165		29.15	10.887	1	40009			85937	1192	59845	59938	95402	95402					-0.018871093448183274
VLWKKKGY	8	Unmodified	_VLWKKKGY_					0	0	0			REV__ENST00000233057.8_1_2:37374882-37376072:-|nuORF	REV__ENST00000233057.8_1_2:37374882-37376072:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.2903137207031	2	511.313295	1020.61204	0.8758	0.00044781	2.0796	0.0010633	2.9554	0.0015112	511.31427303415046	51.287	1.3055	51.175	50.749	52.055	-0.11163					51	34	2	0	0	0	0.027866	1	5198	5198		21.702	0	1	1990500	+		85938	29415	59846	59939	95403	95403					0.10255531444840926
VLWLFSSVK	9	Unmodified	_VLWLFSSVK_					0	0	0		ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;UGGT1|p.G926Dfs*4|1|0.05|ENSG00000136731|chr2:128161219-128161219|G/-|frameshift_variant	ENSG00000136731|ENST00000259253|UGGT1	ENSG00000136731|ENST00000259253|UGGT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.767333984375	2	539.81841	1077.62227	-0.97071	-0.00052401	1.6806	0.00090724	0.70993	0.00038323	539.8199634937376	27.664	0.22754	27.651	27.572	27.799	-0.012983					6	5	2	0	0	0	0.024209	1	1520	1520		66.429	5.4573	1	39541			85939	5040	59847	59940	95404	95404					0.0865609437942112
VLWLIRDSFL	10	Unmodified	_VLWLIRDSFL_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.5218200683594	3	421.248291	1260.72304	-0.44966	-0.00018942	-3.112	-0.0013109	-3.5617	-0.0015004	421.5825378949573	25.289	0.52291	25.062	24.708	25.231	-0.22683					25	11	4	0	0	0	0.03519	1	1142	1142		11.636	0	1	82717	+		85940	23406	59848	59941	95405	95405					0.10311126362262257
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2841186523438	2	515.2844	1028.55425	0.27142	0.00013986	-0.36386	-0.00018749	-0.092431	-4.7628E-05	515.2839719318654	85.286	0.70184	85.091	84.767	85.469	-0.19508					60	16	5	0	0	0	0.06122	3	10313	10313;10323;10336		124.59	25.219	1	1477000			85941	1605	59849	59942	95406;95407;95408	95406					0.04111224728740126
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2843627929688	2	515.2844	1028.55425	0.81415	0.00041952	-0.99855	-0.00051454	-0.18439	-9.5016E-05	515.2836010428184	85.203	0.7449	85.053	84.747	85.492	-0.14967					62	17	5	0	0	0	0.013805	3	10321	10321;10332;10344		167.82	43.23	1	1503800			85942	1605	59849	59942	95409;95410;95411	95409					0.04111224728740126
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.2839965820312	2	515.2844	1028.55425	0.51226	0.00026396	-0.78399	-0.00040398	-0.27173	-0.00014002	515.2838144267937	85.231	0.78809	85.094	84.705	85.493	-0.13753					55	18	4	0	0	0	0.034181	3	10329	10305;10316;10329		138.24	38.867	1	1677000			85943	1605	59849	59942	95412;95413;95414	95414					0.04111224728740126
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.2844	1028.55425	0.75722	0.00039018	-1.1545	-0.00059491	-0.39731	-0.00020473	515.2834836180017	85.261	0.8302	85.261	84.958	85.789	0	0.11641	-0.00068694	NaN	167.82	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253310			85944	1605	59849	59942							0.04111224728740126
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.2844	1028.55425	-0.44367	-0.00022862	0.39924	0.00020572	-0.044434	-2.2896E-05	515.2843395455425	85.222	0.70458	85.165	84.939	85.643	-0.05761	0.020502	0.00091432	NaN	167.82	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274260			85945	1605	59849	59942							0.04111224728740126
VLWPESISV	9	Unmodified	_VLWPESISV_					0	0	0		nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-3|IL4R	nc|ENSG00000077238|P24394-3|IL4R	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.2844	1028.55425	-1.0567	-0.00054452	0.98669	0.00050843	-0.070042	-3.6092E-05	515.2845344651803	85.177	0.90874	85.203	84.871	85.78	0.025528	0.05848	0.0015197	NaN	167.82	32	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280710			85946	1605	59849	59942							0.04111224728740126
VLWRHLKLY	9	Unmodified	_VLWRHLKLY_					0	0	0			REV__ENST00000234816.6_1_1:178840050-178840176:-|nuORF	REV__ENST00000234816.6_1_1:178840050-178840176:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	409.9156494140625	3	409.916876	1226.7288	0.26192	0.00010737	-3.5043	-0.0014365	-3.2423	-0.0013291	409.9153156863466	32.104	0.64629	31.867	31.611	32.258	-0.23667					49	14	5	0	0	0	0.85329	1	2202	2202		35.618	0.46626	1	947570	+		85947	29426	59850	59943	95415	95415					0.12450269664600455
VLWVEVRA	8	Unmodified	_VLWVEVRA_					0	0	0			REV__ENST00000413074.1_1_1:222763317-222763545:+|nuORF	REV__ENST00000413074.1_1_1:222763317-222763545:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.81268310546875	2	486.287277	970.560001	-0.061192	-2.9757E-05	-2.0127	-0.00097874	-2.0739	-0.0010085	486.2862210448341	88.901	0.7617	88.917	88.58	89.342	0.015907					39	17	3	0	0	0	0.027866	1	11188	11188		54.765	0	1	270860	+		85948	32018	59851	59944	95416	95416					0.0735436803107632
VLWVRPEA	8	Unmodified	_VLWVRPEA_					0	0	0			REV__ENST00000251268.10_1_19:42855853-42855892:+|nuORF	REV__ENST00000251268.10_1_19:42855853-42855892:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.2393798828125	2	485.279452	968.544351	-0.60606	-0.00029411	-2.7124	-0.0013163	-3.3185	-0.0016104	485.2774767758035	56.965	1.0392	57.06	56.28	57.32	0.095306					34	28	2	0	0	0	0.027866	1	6332	6332		42.474	8.9589	1	251010	+		85949	29500	59852	59945	95417	95417					0.05882081514027959
VLWVRPEA	8	Unmodified	_VLWVRPEA_					0	0	0			REV__ENST00000251268.10_1_19:42855853-42855892:+|nuORF	REV__ENST00000251268.10_1_19:42855853-42855892:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	485.279452	968.544351	-0.36688	-0.00017804	-0.84323	-0.0004092	-1.2101	-0.00058724	485.27846109916845	57.255	0.51196	57.255	56.872	57.384	0	0.083183	-3.4663E-05	NaN	33.516	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406220	+		85950	29500	59852	59945							0.05882081514027959
VLWVRPEA	8	Unmodified	_VLWVRPEA_					0	0	0			REV__ENST00000251268.10_1_19:42855853-42855892:+|nuORF	REV__ENST00000251268.10_1_19:42855853-42855892:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	485.279452	968.544351	0.26856	0.00013033	0.48654	0.00023611	0.7551	0.00036644	485.2795380137191	57.375	0.76476	57.201	56.769	57.534	-0.1749	0.028708	0.001256	NaN	33.516	31	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385580	+		85951	29500	59852	59945							0.05882081514027959
VLYHVETEV	9	Unmodified	_VLYHVETEV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.7846069335938	2	544.784764	1087.55498	-0.36082	-0.00019657	-0.52107	-0.00028387	-0.88189	-0.00048044	544.7844863294101	51.094	1.0612	51.094	50.675	51.736	0					91	23	6	0	0	0	0.014251	4	5390	5381;5390;5402;5417		183.89	37.316	1	6055600			85952	4366	59853	59946	95418;95419;95420;95421	95419					0.014700193778253379
VLYHVETEV	9	Unmodified	_VLYHVETEV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.7840576171875	2	544.784764	1087.55498	-1.0683	-0.00058198	0.12559	6.8417E-05	-0.94269	-0.00051357	544.7848560769028	51.287	0.98537	51.138	50.758	51.743	-0.14916					83	21	6	0	0	0	0.028181	3	5386	5386;5397;5411		143.02	38.273	1	6419500			85953	4366	59853	59946	95422;95423;95424	95422					0.014700193778253379
VLYHVETEV	9	Unmodified	_VLYHVETEV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.7848510742188	2	544.784764	1087.55498	-1.6303	-0.00088817	0.71557	0.00038983	-0.91474	-0.00049834	544.7851755245067	50.972	0.96222	51.059	50.648	51.61	0.087006					86	23	6	0	0	0	0.014251	2	5310	5298;5310		183.89	35.852	1	6307300			85954	4366	59853	59946	95425;95426	95426					0.014700193778253379
VLYKWHSL	8	Unmodified	_VLYKWHSL_					0	0	0			REV__ENST00000566986.1_1_17:80251923-80252148:+|nuORF	REV__ENST00000566986.1_1_17:80251923-80252148:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.7716674804688	2	523.295102	1044.57565	-0.39018	-0.00020418	0.67178	0.00035154	0.2816	0.00014736	523.7972047050299	72.567	0.16541	72.369	72.289	72.454	-0.19811					5	3	2	0	0	0	0.027866	1	8511	8511		24.203	0	1	30512	+		85955	35309	59854	59947	95427	95427					0.05514654548142062
VLYLAMSPDG	10	Unmodified	_VLYLAMSPDG_					0	0	0		nc|ENSG00000105325|Q9UM11-3|FZR1;ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	nc|ENSG00000105325|Q9UM11-3|FZR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.8342895507812	2	533.267893	1064.52123	-0.19921	-0.00010623	3.5062	0.0018698	3.307	0.0017635	533.2696729456567	81.427	0.70992	81.234	80.966	81.676	-0.19334					25	16	2	0	0	0	0.03519	1	9775	9775		45.952	10.334	1	247510			85956	2659	59855	59948	95428	95428					-0.008447253855820236
VLYNESLQL	9	Unmodified	_VLYNESLQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7916259765625	2	539.792589	1077.57063	-0.51543	-0.00027822	0.84948	0.00045854	0.33406	0.00018032	539.7928802336032	73.26	0.77933	72.989	72.719	73.499	-0.27126					64	19	4	0	0	0	0.053401	1	8894	8894		127.46	11.968	1	4213800			85957	6489	59856	59949	95429	95429					0.03494305894855643
VLYNESLQL	9	Unmodified	_VLYNESLQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3153076171875	2	539.792589	1077.57063	-0.57842	-0.00031223	0.66455	0.00035872	0.086126	4.649E-05	539.7928388437615	73.281	1.2773	73.004	72.368	73.645	-0.2769					72	30	4	0	0	0	0.024344	1	8598	8598		54.776	7.119	1	1012600			85958	6489	59856	59949	95430	95430					0.03494305894855643
VLYNESLQL	9	Unmodified	_VLYNESLQL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.314453125	2	539.792589	1077.57063	-0.6601	-0.00035632	0.64649	0.00034897	-0.013617	-7.3501E-06	539.7927835101964	73.257	0.80431	72.992	72.681	73.485	-0.26479					54	19	4	0	0	0	0.014839	1	8611	8611		132.76	23.28	1	1293400			85959	6489	59856	59949	95431	95431					0.03494305894855643
VLYPLSKLL	9	Unmodified	_VLYPLSKLL_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.7709350585938	2	523.336436	1044.65832	0.20077	0.00010507	-0.54907	-0.00028735	-0.3483	-0.00018228	523.3359569902411	72.992	0.73226	72.711	72.425	73.157	-0.28124					36	17	3	0	0	0	0.024427	1	8827	8827		34.173	11.13	1	296460	+		85960	26054	59857	59950	95432	95432					0.13777551556268008
VLYRAKSK	8	Unmodified	_VLYRAKSK_					0	0	0			REV__CLTCL1|p.E943K|1|0.22|ENSG00000070371|chr22:19219977-19219977|C/T|missense_variant	REV__CLTCL1|p.E943K|1|0.22|ENSG00000070371|chr22:19219977-19219977|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2853088378906	2	482.800552	963.58655	0.41577	0.00020074	-1.463	-0.00070634	-1.0472	-0.0005056	482.7997817879947	54.178	0.61809	54.276	53.973	54.591	0.098015					48	17	4	0	0	0	0.027866	1	5860	5860		30.504	17.544	1	1171500	+		85961	19501	59858	59951	95433	95433					0.10330056922418862
VLYRITEA	8	Unmodified	_VLYRITEA_					0	0	0		nc|ENSG00000113889|P01042-3|KNG1;nc|ENSG00000113889|P01042-2|KNG1;ENSG00000113889|ENST00000644859|KNG1	nc|ENSG00000113889|P01042-3|KNG1	nc|ENSG00000113889|P01042-3|KNG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.28472900390625	2	482.776742	963.538931	-0.09096	-4.3913E-05	1.7569	0.00084821	1.666	0.0008043	482.77727390470324	54.734	0.48935	54.588	54.459	54.948	-0.14609					20	12	3	0	0	0	0.027866	1	5818	5818		47.916	18.766	1	1690500			85962	3332	59859	59952	95434	95434					0.05570357931560466
VLYRITEA	8	Unmodified	_VLYRITEA_					0	0	0		nc|ENSG00000113889|P01042-3|KNG1;nc|ENSG00000113889|P01042-2|KNG1;ENSG00000113889|ENST00000644859|KNG1	nc|ENSG00000113889|P01042-3|KNG1	nc|ENSG00000113889|P01042-3|KNG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2843017578125	2	482.776742	963.538931	0.91085	0.00043974	-2.3639	-0.0011413	-1.4531	-0.00070152	482.7763812362381	54.851	0.50891	54.645	54.538	55.047	-0.20613					20	13	2	0	0	0	0.027866	1	5832	5832		45.952	18.07	1	878180			85963	3332	59859	59952	95435	95435					0.05570357931560466
VLYVIQEVT	9	Unmodified	_VLYVIQEVT_					0	0	0			REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.3071899414062	2	532.305332	1062.59611	-0.20481	-0.00010902	-0.38625	-0.0002056	-0.59105	-0.00031462	532.3049777016188	63.385	1.2168	63.157	62.81	64.027	-0.22773					70	30	4	0	0	0	0.27161	1	7186	7186		79.451	22.73	1	10906000	+		85964	27479	59860	59953	95436	95436					0.0673178041729443
VLYVIQEVT	9	Unmodified	_VLYVIQEVT_					0	0	0			REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.3067626953125	2	532.305332	1062.59611	-0.59161	-0.00031492	0.2474	0.00013169	-0.34422	-0.00018323	532.3051088022723	63.393	1.2879	63.209	62.915	64.203	-0.18386					77	32	4	0	0	0	0.18915	1	7188	7188		90.777	15.733	1	10950000	+		85965	27479	59860	59953	95437	95437					0.0673178041729443
VLYVIQEVT	9	Unmodified	_VLYVIQEVT_					0	0	0			REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	REV__KPNA2|p.A523Gfs*6|1|0.21|ENSG00000182481|chr17:68046569-68046570|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.3062744140625	2	532.305332	1062.59611	0.15126	8.0519E-05	-0.74475	-0.00039643	-0.59348	-0.00031591	532.3047608094935	63.484	1.2773	63.226	62.835	64.112	-0.25824					78	32	4	0	0	0	0.22754	1	7180	7180		85.359	10.316	1	11598000	+		85966	27479	59860	59953	95438	95438					0.0673178041729443
VMAATLPEAY	10	Unmodified	_VMAATLPEAY_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2695922851562	2	533.267893	1064.52123	-0.085784	-4.5746E-05	3.0824	0.0016437	2.9966	0.001598	533.2694635591936	86.494	0.61243	86.307	85.991	86.604	-0.18696					24	13	2	0	0	0	0.941	1	10499	10499		51.335	3.4199	1	397180	+		85967	28263;19723	59861	59954	95439	95439					-0.00844725385604761
VMAEKLLEL	9	Unmodified	_VMAEKLLEL_					0	0	0			REV__nc|ENSG00000154027|Q9Y6K8-3|AK5	REV__nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3042602539062	2	523.301736	1044.58892	0.47324	0.00024765	2.705	0.0014155	3.1782	0.0016632	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.50848	1	10530	10530		58.782	2.0609	1	13836000	+		85968	24928	59862	59955	95440	95440					0.06840724545213561
VMAFMVLER	9	Unmodified	_VMAFMVLER_					0	0	0		ENST00000521864.1_1_8:107754486-107754546:+|nuORF;ENST00000531443.5_1_8:107754486-107758071:+|nuORF	ENST00000521864.1_1_8:107754486-107754546:+|nuORF	ENST00000521864.1_1_8:107754486-107754546:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2640380859375	2	548.288105	1094.56166	-0.29199	-0.00016009	-1.4414	-0.0007903	-1.7334	-0.00095039	548.2871751081541	46.442	0.83221	46.181	45.666	46.498	-0.26118					29	21	2	0	0	0	0.024466	1	4451	4451		18.324	0.062328	1	434910			85969	16014	59863	59956	95441	95441					0.018159177331881438
VMAIALVLW	9	Unmodified	_VMAIALVLW_					0	0	0			REV__ENSG00000165996|ENST00000361271|HACD1	REV__ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.30181884765625	2	508.304081	1014.59361	-0.76104	-0.00038684	-3.6076	-0.0018338	-4.3686	-0.0022206	508.30208349404677	55.636	1.4334	55.48	54.901	56.334	-0.15655					93	38	3	0	0	0	0.48384	1	6067	6067		60.404	0	1	1941200	+		85970	25954	59864	59957	95442	95442					0.08689653478620585
VMALSGLLIT	10	Unmodified	_VMALSGLLIT_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.3059387207031	2	509.304278	1016.594	0.26627	0.00013561	3.1542	0.0016064	3.4204	0.001742	509.30576152941245	91.807	1.4459	91.816	91.442	92.888	0.0094147					101	34	5	0	0	0	1.0781	1	11543	11543		35.618	4.0885	1	3719700	+		85971	25056	59865	59958	95443	95443					0.08637028407838443
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.31231689453125	2	507.312438	1012.61032	-0.24355	-0.00012356	0.25698	0.00013037	0.013432	6.8145E-06	507.3124918159891	63.249	0.82715	63.249	63.018	63.845	0					52	22	3	0	0	0	0.19099	2	7394	7394;7407		90.37	21.583	1	3612300			85972	10471	59866	59959	95444;95445	95444					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.31280517578125	2	507.312438	1012.61032	-0.042036	-2.1325E-05	-0.091237	-4.6285E-05	-0.13327	-6.7611E-05	507.3123409464033	63.531	0.78984	63.28	63.048	63.838	-0.25141					57	21	4	0	0	0	0.14024	2	7395	7395;7406		101.6	10.824	1	3991900			85973	10471	59866	59959	95446;95447	95446					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.3126525878906	2	507.312438	1012.61032	1.3328	0.00067613	-1.5254	-0.00077383	-0.19259	-9.7702E-05	507.3115592927916	63.3	0.7855	63.354	63.09	63.875	0.054104					60	21	4	0	0	0	0.14024	2	7310	7310;7322		101.6	22.15	1	3136400			85974	10471	59866	59959	95448;95449	95448					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.31231689453125	2	507.312438	1012.61032	-0.44672	-0.00022663	0.158	8.0154E-05	-0.28873	-0.00014647	507.3123795931097	64.806	0.99889	64.571	64.256	65.255	-0.2345					61	24	4	0	0	0	0.091713	3	7389	7378;7389;7403		113.41	22.635	1	2828400			85975	10471	59866	59959	95450;95451;95452	95451					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.3121337890625	2	507.312438	1012.61032	-0.77097	-0.00039112	0.48697	0.00024705	-0.28399	-0.00014407	507.31254743470396	64.795	1.1692	64.592	64.263	65.432	-0.20254					59	28	3	0	0	0	0.077175	2	7379	7379;7391		118.74	32.814	1	3071200			85976	10471	59866	59959	95453;95454	95453					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	507.3130798339844	2	507.312438	1012.61032	-0.68567	-0.00034785	0.16691	8.4676E-05	-0.51876	-0.00026318	507.31239215247916	64.803	0.99631	64.547	64.269	65.266	-0.25563					56	24	3	0	0	0	0.19099	2	7374	7374;7385		90.37	23.708	1	2743900			85977	10471	59866	59959	95455;95456	95455					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.312438	1012.61032	-0.018413	-9.3412E-06	-0.27269	-0.00013834	-0.29111	-0.00014768	507.3120970020965	63.446	0.76653	63.218	62.974	63.74	-0.22773	-0.051888	0.00034198	NaN	101.6	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1700700			85978	10471	59866	59959							0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	507.312438	1012.61032	-0.25222	-0.00012796	-0.16821	-8.5334E-05	-0.42043	-0.00021329	507.3121335374651	63.443	0.81044	63.251	62.988	63.798	-0.19243	-0.019449	0.00044799	NaN	101.6	48	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1633800			85979	10471	59866	59959							0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.312438	1012.61032	0.23116	0.00011727	-0.59661	-0.00030267	-0.36546	-0.0001854	507.3119650372349	63.527	0.67449	63.269	63	63.675	-0.25824	-0.0012033	1.3319E-05	NaN	101.6	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1683200			85980	10471	59866	59959							0.10452154364600119
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(85)APRTLLL	0	0	1		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3098754882812	2	515.309895	1028.60524	1.0729	0.00055289	-1.1082	-0.00057107	-0.035268	-1.8174E-05	515.3091421605477	59.487	0.61555	59.287	58.923	59.538	-0.20016					52	16	4	0	0	0	0.22902	1	6770	6770		85.161	26.379	1	2926200			85981	10471	59866	59960	95457	95457		442			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(70)APRTLLL	0	0	1		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.3096923828125	2	515.309895	1028.60524	-0.32213	-0.000166	0.78802	0.00040608	0.4659	0.00024008	515.3102019388278	60.506	1.1742	60.3	59.794	60.968	-0.20599					73	29	3	0	0	0	0.34489	1	6739	6739		69.628	20.186	1	1552800			85982	10471	59866	59960	95458	95458		442			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(96)APRTLLL	0	0	1		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.3089599609375	2	515.309895	1028.60524	-0.70365	-0.0003626	1.1459	0.00059049	0.44225	0.00022789	515.3104177108936	60.543	1.1695	60.366	59.704	60.874	-0.1761					75	29	3	0	0	0	0.16638	1	6734	6734		95.815	24.519	1	1667000			85983	10471	59866	59960	95459	95459		442			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(65)APRTLLL	0	0	1		HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant;HLA-A|p.E79Gfs*20|1|0.19|ENSG00000206503|chr6:29942915-29942916|-/A|frameshift_variant;HLA-A|p.E77Dfs*23|1|0.1|ENSG00000206503|chr6:29942907-29942908|-/GATA|frameshift_variant;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;HLA-A|p.L154Gfs*16|1|0.66|ENSG00000206503|chr6:29943383-29943402|CCTGCGCTCTTGGACCGCGG/-|frameshift_variant;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	HLA-A|p.R45Pfs*54|1|0.35|ENSG00000206503|chr6:29942812-29942813|-/C|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.3090209960938	2	515.309895	1028.60524	-0.57607	-0.00029686	0.88894	0.00045808	0.31287	0.00016122	515.310237245306	60.611	1.3315	60.357	59.68	61.012	-0.25373					83	33	3	0	0	0	0.40693	1	6739	6739		65.465	17.506	1	1587800			85984	10471	59866	59960	95460	95460		442			0.0920785050197992
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(90)APRTVLL	0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3027038574219	2	508.30207	1014.58959	-0.034944	-1.7762E-05	-0.16899	-8.5896E-05	-0.20393	-0.00010366	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.19099	3	6253	6230;6253;6268		90.37	27.35	1	8817200			85985	10724	59867	59961	95461;95462;95463	95462		450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(96)APRTVLL	0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3021240234375	2	508.30207	1014.58959	-0.35052	-0.00017817	0.19073	9.6946E-05	-0.15979	-8.1223E-05	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.16638	2	6229	6229;6241		95.815	26.188	1	8370900			85986	10724	59867	59961	95464;95465	95464		450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(110)APRTVLL	0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.3025207519531	2	508.30207	1014.58959	-0.88652	-0.00045062	0.65647	0.00033369	-0.23005	-0.00011693	508.3023500786697	55.676	1.7745	55.774	54.66	56.435	0.098015					108	39	3	0	0	0	0.091713	3	6170	6132;6158;6170		113.41	46.036	1	9000800			85987	10724	59867	59961	95466;95467;95468	95468		450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(51)APRTVLL	0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.3007507324219	2	508.30207	1014.58959	-0.13688	-6.9575E-05	-0.35711	-0.00018152	-0.49399	-0.0002511	508.3016883344783	55.812	1.4169	55.596	55.012	56.429	-0.21607					105	38	3	0	0	0	0.6238	1	5995	5995		51.193	11.94	1	2058700			85988	10724	59867	59961	95469	95469		450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(85)APRTVLL	0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.30255126953125	2	508.30207	1014.58959	0.56135	0.00028533	-0.84065	-0.0004273	-0.2793	-0.00014197	508.3014337405353	54.883	0.76797	54.676	54.279	55.047	-0.20613					63	20	4	0	0	0	0.22902	2	5857	5827;5857		85.161	16.374	1	2509900			85989	10724	59867	59961	95470;95471	95471		450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(85)APRTVLL	0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.301513671875	2	508.30207	1014.58959	-0.97292	-0.00049454	0.39816	0.00020239	-0.57476	-0.00029215	508.3020902894339	56.024	1.3523	55.809	55.003	56.356	-0.21551					90	36	3	0	0	0	0.22902	1	6001	6001		85.161	20.954	1	1989300			85990	10724	59867	59961	95472	95472		450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_					0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	508.30207	1014.58959	-0.57149	-0.00029049	-0.082735	-4.2054E-05	-0.65423	-0.00033254	508.3018985612322	54.679	1.1742	54.679	53.942	55.116	0	0.0009039	0.00023618	NaN	85.161	88	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3939200			85991	10724	59867	59961				450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_					0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.30207	1014.58959	-0.21039	-0.00010694	-0.2871	-0.00014593	-0.4975	-0.00025288	508.30178363335017	54.898	1.2474	54.747	53.852	55.099	-0.15036	0.06897	2.8425E-05	NaN	85.161	88	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3934400			85992	10724	59867	59961				450			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_					0	0	1		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	508.30207	1014.58959	-0.22447	-0.0001141	-0.038591	-1.9616E-05	-0.26306	-0.00013371	508.301834599668	54.927	0.682	54.696	54.315	54.997	-0.23087	0.017664	0.00028106	NaN	85.161	60	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2273300			85993	10724	59867	59961				450			0.08287563984924873
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.3043212890625	2	500.304613	998.594672	0.67735	0.00033888	-1.0396	-0.00052011	-0.36223	-0.00018122	500.30399539328306	58.739	0.87779	58.739	58.342	59.22	0					55	23	3	0	0	0	0.015901	4	6657	6657;6669;6681;6695		157.33	56.776	1	5827400			85994	10724	59867	59962	95473;95474;95475;95476	95473					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.30487060546875	2	500.304613	998.594672	0.99374	0.00049717	-2.2001	-0.0011007	-1.2064	-0.00060355	500.80465730354445	59.912	1.3243	59.912	59.559	60.884	0					100	34	5	0	0	0	0.19099	2	6892	6866;6892		90.37	31.588	1	23828000			85995	10724	59867	59962	95477;95478	95478					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.30474853515625	2	500.304613	998.594672	1.3081	0.00065443	-1.7427	-0.0008719	-0.43467	-0.00021747	500.3036575397508	58.969	0.79834	58.781	58.424	59.222	-0.18705					56	21	4	0	0	0	0.027092	3	6683	6672;6683;6697		143.89	56.776	1	6553500			85996	10724	59867	59962	95479;95480;95481	95480					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.30450439453125	2	500.304613	998.594672	0.56419	0.00028226	-1.051	-0.00052582	-0.48682	-0.00024356	500.3040423039491	58.6	0.84323	58.692	58.297	59.14	0.091217					64	22	5	0	0	0	0.033448	3	6564	6564;6572;6586		138.83	48.049	1	6078200			85997	10724	59867	59962	95482;95483;95484	95482					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3046569824219	2	500.304613	998.594672	-0.62494	-0.00031266	-0.68092	-0.00034067	-1.3059	-0.00065333	500.80550597038047	59.82	0.85738	59.899	59.572	60.429	0.078888					78	22	5	0	0	0	0.34489	2	6795	6758;6795		69.628	12.907	1	18276000			85998	10724	59867	59962	95485;95486	95486					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.3047180175781	2	500.304613	998.594672	-0.29594	-0.00014806	0.1803	9.0203E-05	-0.11565	-5.7859E-05	500.3046392057588	58.888	1.1181	58.7	58.39	59.508	-0.18795					83	27	4	0	0	0	0.013094	4	6481	6471;6481;6492;6504		171.38	63.297	1	6599400			85999	10724	59867	59962	95487;95488;95489;95490	95488					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.3045654296875	2	500.304613	998.594672	0.63553	0.00031796	-1.685	-0.00084303	-1.0495	-0.00052507	500.3037940479863	60.116	1.053	59.918	59.499	60.552	-0.19742					66	26	5	0	0	0	0.091713	3	6681	6663;6668;6681		113.41	42.116	1	5022700			86000	10724	59867	59962	95491;95492;95493	95493					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.30413818359375	2	500.304613	998.594672	0.20345	0.00010178	-0.35317	-0.00017669	-0.14972	-7.4906E-05	500.3042888747428	58.871	1.2032	58.689	58.308	59.511	-0.18134					73	29	4	0	0	0	0.027092	4	6497	6476;6484;6497;6510		143.89	46.363	1	6642700			86001	10724	59867	59962	95494;95495;95496;95497	95496					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.3052062988281	2	500.304613	998.594672	-0.0382	-1.9111E-05	-0.76043	-0.00038044	-0.79862	-0.00039956	500.3041456687165	60.043	1.1568	59.867	59.478	60.635	-0.1761					62	29	4	0	0	0	0.50848	1	6674	6674		58.782	9.3404	1	4970600			86002	10724	59867	59962	95498	95498					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.3048400878906	2	500.304613	998.594672	0.25329	0.00012672	-0.38665	-0.00019344	-0.13337	-6.6724E-05	500.3043120802185	58.996	1.4966	58.754	58.044	59.54	-0.24166					83	36	4	0	0	0	0.015901	4	6474	6474;6486;6497;6513		157.33	49.242	1	6757400			86003	10724	59867	59962	95499;95500;95501;95502	95499					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant;HLA-B|p.H216Pfs*5|1|0.12|ENSG00000234745|chr6:31355565-31355566|-/G|frameshift_variant;HLA-B|p.V285Pfs*5|1|0.23|ENSG00000234745|chr6:31355359-31355360|-/ATGG|frameshift_variant;HLA-B|p.V309Gfs*24|1|0.39|ENSG00000234745|chr6:31355192-31355193|CA/-|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	HLA-B|p.T211Dfs*10|1|0.29|ENSG00000234745|chr6:31355582-31355583|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.3045654296875	2	500.304613	998.594672	-0.61641	-0.00030839	-0.26293	-0.00013155	-0.87934	-0.00043994	500.30437947927174	60.136	1.1696	59.887	59.495	60.665	-0.24842					67	29	5	0	0	0	0.23085	1	6669	6669		84.916	26.134	1	4802100			86004	10724	59867	59962	95503	95503					0.09531867847545072
VMDECTHVANF	11	Unmodified	_VMDECTHVANF_					0	0	0		nc|ENSG00000164074|Q0P651-3|ABHD18;nc|ENSG00000164074|Q0P651-2|ABHD18;ENST00000473040.6_1_4:128905516-128956965:+|nuORF;nc|ENSG00000164074|Q0P651|ABHD18;ENSG00000164074|ENST00000645843|ABHD18;nc|ENSG00000164074|Q0P651-4|ABHD18	nc|ENSG00000164074|Q0P651-3|ABHD18	nc|ENSG00000164074|Q0P651-3|ABHD18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.2659912109375	2	633.268098	1264.52164	-0.082153	-5.2025E-05	-3.3672	-0.0021323	-3.4493	-0.0021843	633.2661262132405	32.046	1.1928	32.046	31.71	32.903	0					89	30	5	0	0	0	0.79085	1	2184	2184		40.778	18.199	1	3955700			86005	7205	59868	59963	95504	95504					-0.10003673728056128
VMDECTHVANF	11	Unmodified	_VMDECTHVANF_					0	0	0		nc|ENSG00000164074|Q0P651-3|ABHD18;nc|ENSG00000164074|Q0P651-2|ABHD18;ENST00000473040.6_1_4:128905516-128956965:+|nuORF;nc|ENSG00000164074|Q0P651|ABHD18;ENSG00000164074|ENST00000645843|ABHD18;nc|ENSG00000164074|Q0P651-4|ABHD18	nc|ENSG00000164074|Q0P651-3|ABHD18	nc|ENSG00000164074|Q0P651-3|ABHD18	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	633.268098	1264.52164	0.29916	0.00018945	-3.6047	-0.0022827	-3.3055	-0.0020933	633.2659246060883	31.908	1.2692	31.92	31.624	32.893	0.011799	0.028138	-0.00034108	NaN	40.778	90	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3981800			86006	7205	59868	59963							-0.10003673728056128
VMDFLKTRLLD	11	Unmodified	_VMDFLKTRLLD_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.263427734375	3	450.919846	1349.73771	0.1818	8.1978E-05	-4.0226	-0.0018139	-3.8408	-0.0017319	451.2527847113236	61.791	0.45283	61.577	61.209	61.662	-0.21375					17	10	2	0	0	0	0.024782	1	6875	6875		25.126	0	1	97400			86007	8332	59869	59964	95505	95505					0.07682830448129607
VMDFYLVK	8	Unmodified	_VMDFYLVK_					0	0	0			REV__nc|ENSG00000122008|Q9UBT6-2|POLK	REV__nc|ENSG00000122008|Q9UBT6-2|POLK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	507.770071	1013.52559	-0.48527	-0.00024641	-3.7558	-0.0019071	-4.241	-0.0021535	507.7679860837699	60.878	2.5298	60.664	59.603	62.133	-0.21339					184	67	4	0	0	0	0.81662	1	7007	7007		57.811	4.4598	1	7156300	+		86008	36619	59870	59965	95506	95506					0.019367838279663374
VMDHSQNN	8	Unmodified	_VMDHSQNN_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000044524|P29320-2|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7618408203125	2	472.698166	943.381779	-0.11093	-5.2435E-05	0.43734	0.00020673	0.32641	0.00015429	472.6984280841751	32.628	0.14521	32.64	32.523	32.669	0.011795					5	3	2	0	0	0	0.027866	1	2264	2264		29.15	3.6994	1	68583			86009	1093	59871	59966	95507	95507					-0.09217669950260188
VMDLLKGLPG	10	Unmodified	_VMDLLKGLPG_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7573852539062	2	521.801903	1041.58925	-0.023891	-1.2466E-05	4.0082	0.0020915	3.9843	0.002079	521.8037006249467	26.171	0.48788	26.003	25.774	26.262	-0.16816					24	14	2	0	0	0	0.03519	1	1279	1279		23.042	14.22	1	286020			86010	5200	59872	59967	95508	95508					0.0701214426505885
VMDLLKGLPG	10	Unmodified	_VMDLLKGLPG_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	521.801903	1041.58925	-0.78331	-0.00040873	3.8331	0.0020001	3.0498	0.0015914	521.8036871874509	26.327	0.86601	26.327	26.001	26.867	0	0.11195	-8.85E-05	NaN	23.042	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939950			86011	5200	59872	59967							0.0701214426505885
VMDLLKGLPG	10	Unmodified	_VMDLLKGLPG_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	521.801903	1041.58925	-0.63512	-0.00033141	3.6319	0.0018951	2.9967	0.0015637	521.8035760468149	26.343	0.86399	26.32	25.954	26.818	-0.023088	0.10456	-0.00029853	NaN	23.042	44	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	991370			86012	5200	59872	59967							0.0701214426505885
VMDLLKGLPG	10	Unmodified	_VMDLLKGLPG_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	521.801903	1041.58925	-0.26134	-0.00013637	3.2928	0.0017182	3.0315	0.0015818	521.8033998242684	26.183	0.91588	26.264	25.967	26.883	0.081293	0.049016	-0.00065238	NaN	23.042	45	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	975350			86013	5200	59872	59967							0.0701214426505885
VMDLLKGLPG	10	Unmodified	_VMDLLKGLPG_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.801903	1041.58925	-0.95513	-0.00049839	5.1597	0.0026923	4.2045	0.0021939	521.8044130935941	26.415	0.54706	26.179	25.948	26.495	-0.23603	-0.036366	0.0012959	NaN	23.042	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267680			86014	5200	59872	59967							0.0701214426505885
VMDLLKGLPG	10	Unmodified	_VMDLLKGLPG_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.801903	1041.58925	-0.79596	-0.00041533	4.913	0.0025636	4.117	0.0021483	521.8040775689295	26.361	0.47778	26.198	25.98	26.458	-0.16331	-0.017202	0.0010385	NaN	23.042	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238230			86015	5200	59872	59967							0.0701214426505885
VMDLPNPLD	9	Unmodified	_VMDLPNPLD_					0	0	0			REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	REV__ENST00000285071.8_1_17:17116142-17116382:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.3072814941406	2	507.252243	1012.48993	-0.77646	-0.00039386	-3.2443	-0.0016457	-4.0207	-0.0020395	507.250515365708	83.667	0.51934	83.693	83.469	83.988	0.026558					18	11	2	0	0	0	0.024288	1	10427	10427		52.937	20.124	1	64761	+		86016	29913	59873	59968	95509	95509					-0.015812984197054902
VMDPTKILI	9	Oxidation (M)	_VM(Oxidation (M))DPTKILI_		VM(1)DPTKILI		VM(57)DPTKILI	0	0	1		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3;nc|ENSG00000152520|Q58A45-4|PAN3;ENST00000503791.5_1_13:28712794-28846220:+|nuORF	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.3031005859375	2	523.301736	1044.58892	-0.30343	-0.00015878	2.751	0.0014396	2.4476	0.0012808	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	0.53979	1	10851	10851		56.721	9.0637	1	11993000			86017	6278	59874	59969	95510	95510		262			0.06840724545213561
VMDRTQIL	8	Unmodified	_VMDRTQIL_					0	0	0		CON__Q0VCM5	CON__Q0VCM5	CON__Q0VCM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.26837158203125	2	488.268227	974.521901	-0.24673	-0.00012047	-0.063167	-3.0842E-05	-0.30989	-0.00015131	488.26828955129054	43.545	1.3545	43.575	43.116	44.47	0.030823					102	37	5	0	0	0	0.74904	1	4050	4050		63.306	2.3343	1	11714000		+	86018	537	59875	59970	95511	95511					0.03362114054118592
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(130)DSKIVQV	0	0	1		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7813110351562	2	517.781167	1033.54778	-0.10717	-5.5492E-05	-0.33509	-0.0001735	-0.44226	-0.000229	517.7809343172893	41.938	1.1374	41.938	41.505	42.642	0					93	32	5	0	0	0	0.041068	3	3813	3790;3813;3838		132.76	25.75	1	9989100			86019	991;3340	59876	59971	95512;95513;95514	95513		28			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(120)DSKIVQV	0	0	1		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7809448242188	2	517.781167	1033.54778	-1.2376	-0.00064079	0.65802	0.00034071	-0.57955	-0.00030008	517.7812906055916	44.314	2.5096	44.314	42.569	45.079	0					177	70	4	0	0	0	0.062622	3	4199	4199;4210;4232		124.08	30.885	1	4913000			86020	991;3340	59876	59971	95515;95516;95517	95515		28			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(120)DSKIVQV	0	0	1		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.7813110351562	2	517.781167	1033.54778	-0.32696	-0.00016929	-0.1829	-9.47E-05	-0.50986	-0.00026399	517.7810496391146	42.101	1.0371	41.969	41.565	42.602	-0.1322					83	29	4	0	0	0	0.071379	3	3830	3797;3818;3830		120.87	25.053	1	10024000			86021	991;3340	59876	59971	95518;95519;95520	95520		28			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(120)DSKIVQV	0	0	1		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.7805786132812	2	517.781167	1033.54778	-1.1653	-0.00060335	0.87773	0.00045447	-0.28753	-0.00014888	517.7812978180569	44.489	2.5305	44.344	42.553	45.083	-0.14471					177	71	5	0	0	0	0.071379	3	4246	4210;4246;4259		120.87	19.109	1	4813600			86022	991;3340	59876	59971	95521;95522;95523	95522		28			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(110)DSKIVQV	0	0	1		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7808227539062	2	517.781167	1033.54778	-0.53141	-0.00027515	0.015846	8.2046E-06	-0.51557	-0.00026695	517.781147224784	42.014	1.0813	42.04	41.636	42.717	0.026012					84	30	4	0	0	0	0.094442	2	3785	3772;3785		112.41	27.495	1	11102000			86023	991;3340	59876	59971	95524;95525	95525		28			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(130)DSKIVQV	0	0	1		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.7810668945312	2	517.781167	1033.54778	-0.69299	-0.00035882	0.061884	3.2042E-05	-0.63111	-0.00032677	517.7810779074306	44.264	2.4861	44.301	42.652	45.138	0.0369					160	69	3	0	0	0	0.041068	4	4147	4124;4147;4172;4202		132.76	42.388	1	4634400			86024	991;3340	59876	59971	95526;95527;95528;95529	95527		28			0.03234963505747146
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_					0	0	1		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.781167	1033.54778	-0.26105	-0.00013517	0.18796	9.7325E-05	-0.07309	-3.7844E-05	517.7810263050159	42.079	0.92366	41.956	41.603	42.527	-0.12299	-0.039679	0.00027705	NaN	132.76	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3609300			86025	991;3340	59876	59971				28			0.03234963505747146
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7835388183594	2	509.78371	1017.55287	-0.12847	-6.5491E-05	-0.46308	-0.00023607	-0.59154	-0.00030156	509.7835164689934	49.671	0.81575	49.671	49.362	50.178	0					66	22	4	0	0	0	0.013337	5	5155	5131;5143;5155;5169;5182		176.44	71.698	1	26826000			86026	991;3340	59876	59972	95530;95531;95532;95533;95534	95532					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7834777832031	2	509.78371	1017.55287	-0.038754	-1.9756E-05	-0.60049	-0.00030612	-0.63925	-0.00032588	509.7834565940141	49.878	0.73524	49.727	49.33	50.065	-0.1512					49	19	3	0	0	0	0.013337	5	5143	5143;5155;5167;5180;5195		176.44	47.657	1	29784000			86027	991;3340	59876	59972	95535;95536;95537;95538;95539	95535					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7833251953125	2	509.78371	1017.55287	-1.1081	-0.00056491	0.48755	0.00024855	-0.62059	-0.00031637	509.7839875836236	49.596	0.7574	49.67	49.352	50.11	0.074192					73	20	6	0	0	0	0.014738	5	5080	5045;5056;5068;5080;5094		163.15	56.143	1	27531000			86028	991;3340	59876	59972	95540;95541;95542;95543;95544	95543					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.7839660644531	2	509.78371	1017.55287	0.19579	9.9811E-05	-0.53397	-0.00027221	-0.33818	-0.0001724	509.78342217405765	49.792	1.178	49.686	48.987	50.165	-0.10558					65	30	4	0	0	0	0.013924	6	5020	4999;5008;5020;5033;5045;5059		167.23	56.355	1	12999000			86029	991;3340	59876	59972	95545;95546;95547;95548;95549;95550	95547					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.784423828125	2	509.78371	1017.55287	-0.13783	-7.0265E-05	-1.024	-0.00052203	-1.1618	-0.00059229	509.78314456127896	50.027	1.2111	49.747	48.934	50.145	-0.27977					95	31	4	0	0	0	0.016542	5	5049	5027;5037;5049;5062;5076		154.12	60.112	1	15314000			86030	991;3340	59876	59972	95551;95552;95553;95554;95555	95553					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.7837219238281	2	509.78371	1017.55287	0.29137	0.00014854	-1.253	-0.00063874	-0.9616	-0.00049021	509.78295952296355	49.877	1.0929	49.696	49.002	50.094	-0.18071					89	28	5	0	0	0	0.013337	5	5031	5011;5019;5031;5043;5056		176.44	74.844	1	15032000			86031	991;3340	59876	59972	95556;95557;95558;95559;95560	95558					0.044792673683673456
VMDSVRKIH	9	Unmodified	_VMDSVRKIH_					0	0	0			REV__ENSG00000168016|ENST00000645898|TRANK1	REV__ENSG00000168016|ENST00000645898|TRANK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.7947387695312	2	542.800226	1083.5859	-0.28428	-0.00015431	-0.77509	-0.00042072	-1.0594	-0.00057503	542.7996369913358	39.898	0.50971	39.898	39.627	40.137	0					24	13	2	0	0	0	0.4752	1	3491	3491		60.972	3.1607	1	1004200	+		86032	26216	59877	59973	95561	95561					0.04744894211080464
VMEAVSLLD	9	Unmodified	_VMEAVSLLD_					0	0	0			REV__FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	REV__FBXO46|p.P291Lfs*80|1|0.47|ENSG00000177051|chr19:45712624-45712624|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25408935546875	2	488.754618	975.494683	-1.2881	-0.00062956	2.2616	0.0011054	0.97349	0.0004758	488.7555228098664	29.389	0.74984	29.389	29.186	29.936	0					47	18	4	0	0	0	0.02435	1	1783	1783		42.396	16.946	1	2388800	+		86033	27078	59878	59974	95562	95562					0.005955857230787842
VMEGDDDI	8	Unmodified	_VMEGDDDI_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.2395324707031	2	447.181483	892.348413	-0.038957	-1.7421E-05	-1.7295	-0.00077338	-1.7684	-0.0007908	447.1801079457891	54.583	0.10673	54.346	54.273	54.38	-0.2376					4	2	2	0	0	0	0.027866	1	5805	5805		52.299	0	1	23489			86034	2432	59879	59975	95563	95563					-0.10206716512834646
VMEINESY	8	Unmodified	_VMEINESY_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.2586364746094	2	492.720775	983.426998	-1.2323	-0.0006072	1.109	0.00054644	-0.12332	-6.0762E-05	492.72131036571227	54.194	0.79814	54.058	53.564	54.363	-0.13617					43	24	3	0	0	0	0.027866	1	5732	5732		27.882	0	1	506920	+		86035	26325	59880	59976	95564	95564					-0.06537864207723487
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.2813720703125	2	573.281	1144.54745	0.44912	0.00025747	-0.30641	-0.00017566	0.14271	8.1813E-05	573.2806544204061	59.393	0.76259	59.205	58.897	59.66	-0.18856					56	18	4	0	0	0	0.041068	3	6559	6548;6559;6571		132.76	66.329	1	3406200			86036	6728	59881	59977	95565;95566;95567	95566					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.2816162109375	2	573.281	1144.54745	0.37714	0.00021621	-0.24253	-0.00013904	0.13462	7.7172E-05	573.2806850306167	59.231	0.64208	59.05	58.831	59.473	-0.18133					47	15	4	0	0	0	0.071379	3	6536	6536;6546;6557		120.87	54.439	1	3515700			86037	6728	59881	59977	95568;95569;95570	95568					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.2814331054688	2	573.281	1144.54745	0.32269	0.00018499	-0.43473	-0.00024923	-0.11204	-6.4232E-05	573.2805852735966	59.389	0.80216	59.141	58.808	59.61	-0.24842					56	19	4	0	0	0	0.025498	3	6540	6540;6553;6565		145.16	65.705	1	3311600			86038	6728	59881	59977	95571;95572;95573	95571					-0.01904456214106176
VMEKSFLEY	9	Unmodified	_VMEKSFLEY_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	573.281	1144.54745	-0.26972	-0.00015462	-5.7358	-0.0032882	-6.0055	-0.0034428	573.276590517799	59.162	0.32949	59.248	59.134	59.464	0.085682	0.087181	-0.0061443	NaN	145.16	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113050			86039	6728	59881	59977							-0.01904456214106176
VMEQTRPCL	9	Oxidation (M)	_VM(Oxidation (M))EQTRPCL_		VM(1)EQTRPCL		VM(74)EQTRPCL	0	0	1		nc|ENSG00000187720|Q6ZMP0-2|THSD4;ENSG00000187720|ENST00000261862|THSD4	nc|ENSG00000187720|Q6ZMP0-2|THSD4	nc|ENSG00000187720|Q6ZMP0-2|THSD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.764404296875	2	546.762452	1091.51035	-0.62137	-0.00033974	3.4075	0.0018631	2.7861	0.0015234	546.7641126564824	67.699	1.1072	67.411	67.069	68.176	-0.28834					77	27	4	0	0	0	0.31037	1	8079	8079		74.255	10.048	1	4039100			86040	9651	59882	59978	95574	95574		401			-0.03174451031532044
VMFFAASLL	9	Unmodified	_VMFFAASLL_					0	0	0			REV__ENSG00000146360|ENST00000275169|GPR6	REV__ENSG00000146360|ENST00000275169|GPR6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7709655761719	2	499.772614	997.530675	-0.40997	-0.00020489	-3.1525	-0.0015755	-3.5625	-0.0017804	499.77090805100687	65.6	1.2041	65.327	65.017	66.221	-0.27283					93	32	4	0	0	0	0.44472	1	7747	7747		62.978	6.2574	1	10582000	+		86041	24479	59883	59979	95575	95575					0.03181087690586537
VMFFFMQLEW	10	Unmodified	_VMFFFMQLEW_					0	0	0			REV__ENSG00000165762|ENST00000641885|OR4K2	REV__ENSG00000165762|ENST00000641885|OR4K2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2742004394531	3	459.883856	1376.62974	-0.29429	-0.00013534	2.3816	0.0010953	2.0873	0.00095993	459.88509969108276	34.199	0.53396	33.993	33.75	34.284	-0.20696					13	13	2	0	0	0	0.03519	1	2533	2533		23.523	2.4905	1	78343	+		86042	25926	59884	59980	95576	95576					-0.04351257406824516
VMGSRFIFL	9	Unmodified	_VMGSRFIFL_					0	0	0			REV__ENST00000494462.1_1_2:183593610-183593745:+|nuORF	REV__ENST00000494462.1_1_2:183593610-183593745:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.2969360351562	2	535.296788	1068.57902	-0.35562	-0.00019036	0.4422	0.00023671	0.086588	4.635E-05	535.2968901723351	79.648	1.2514	79.498	79.195	80.446	-0.15051					89	29	5	0	0	0	0.18915	1	9534	9534		90.777	11.064	1	4361500	+		86043	33783	59885	59981	95577	95577					0.047475813304799885
VMHSWQDL	8	Unmodified	_VMHSWQDL_					0	0	0			REV__ENST00000554012.5_1_14:96176735-96176822:-|nuORF	REV__ENST00000554012.5_1_14:96176735-96176822:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	508.29254150390625	2	508.236927	1014.4593	-0.16223	-8.2453E-05	1.2974	0.0006594	1.1352	0.00057695	508.2383264372504	50.753	0.26646	50.604	50.39	50.657	-0.14916					13	7	3	0	0	0	0.027866	1	5293	5293		71.296	30.518	1	149180	+		86044	34980	59886	59982	95578	95578					-0.04735032014082208
VMHVGHPR	8	Unmodified	_VMHVGHPR_					0	0	0			REV__ENST00000566774.1_1_16:68264768-68266536:-|nuORF	REV__ENST00000566774.1_1_16:68264768-68266536:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.2629699707031	2	466.747796	931.481039	0.0013357	6.2346E-07	2.0027	0.00093473	2.004	0.00093536	466.7495957293194	50.925	0.27144	50.776	50.626	50.897	-0.14916					10	7	2	0	0	0	0.027866	1	5344	5344		25.45	1.2474	1	121010	+		86045	21354	59887	59983	95579	95579					0.012558175251683679
VMIGKLEDV	9	Unmodified	_VMIGKLEDV_					0	0	0			REV__nc|ENSG00000292366|P51809-3|VAMP7	REV__nc|ENSG00000292366|P51809-3|VAMP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2783203125	2	502.27826	1002.54197	0.55993	0.00028124	-0.45552	-0.0002288	0.10441	5.2441E-05	502.2779297665883	79.865	0.75435	79.619	79.278	80.032	-0.2465					29	17	2	0	0	0	0.31037	1	9556	9556		74.255	0	1	967760	+		86046	22758	59888	59984	95580	95580					0.04079864994048421
VMIILLCKL	9	Unmodified	_VMIILLCKL_					0	0	0			REV__ENST00000423485.5_1_17:38559296-38560432:-|nuORF	REV__ENST00000423485.5_1_17:38559296-38560432:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2967529296875	2	523.329242	1044.64393	-0.43277	-0.00022648	0.59221	0.00030992	0.15943	8.3435E-05	523.329452259821	51.617	0.13221	51.617	51.501	51.633	0					5	3	2	0	0	0	0.024354	1	5486	5486		47.916	15.961	1	99767	+		86047	32221	59889	59985	95581	95581					0.1233943981212633
VMIRILVK	8	Unmodified	_VMIRILVK_					0	0	0			REV__ENSG00000182718|ENST00000451270|ANXA2	REV__ENSG00000182718|ENST00000451270|ANXA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.3107604980469	2	486.325348	970.636143	-0.69282	-0.00033694	3.1409	0.0015275	2.448	0.0011905	486.3266937195369	74.826	0.48598	74.836	74.565	75.051	0.010376					19	11	2	0	0	0	0.027866	1	9103	9103		25.45	6.0902	1	154170	+		86048	27505	59890	59986	95582	95582					0.14965048606859455
VMIVYCSKD	9	Unmodified	_VMIVYCSKD_					0	0	0			REV__SLC26A2|p.A218V|1|0.27|ENSG00000155850|chr5:149978305-149978305|C/T|missense_variant	REV__SLC26A2|p.A218V|1|0.27|ENSG00000155850|chr5:149978305-149978305|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3291015625	2	529.256471	1056.49839	0.15654	8.2851E-05	4.0628	0.0021503	4.2194	0.0022331	530.2594385328392	78.191	0.97562	77.959	77.501	78.476	-0.23141					56	22	3	0	0	0	0.024466	1	9277	9277		42.474	18.272	1	61348	+		86049	37500	59891	59987	95583	95583					-0.027600677747159352
VMKAQWPF	8	Unmodified	_VMKAQWPF_					0	0	0			REV__nc|ENSG00000257017|P00738-2|HP	REV__nc|ENSG00000257017|P00738-2|HP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.7790222167969	2	503.762581	1005.51061	-0.47948	-0.00024155	-0.57117	-0.00028773	-1.0506	-0.00052928	503.76216986066527	23.134	0.62775	23.21	22.933	23.561	0.076241					32	14	3	0	0	0	0.027866	1	824	824		35.201	17.836	1	325570	+		86050	29084	59892	59988	95584	95584					0.008073367506312934
VMKKHKEL	8	Unmodified	_VMKKHKEL_					0	0	0		nc|ENSG00000164118|Q9C0F1-2|CEP44;ENSG00000164118|ENST00000503780|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	nc|ENSG00000164118|Q9C0F1-2|CEP44	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.8025817871094	2	506.802237	1011.58992	-0.31051	-0.00015737	0.28742	0.00014566	-0.023087	-1.1701E-05	506.8023690012955	17.348	0.25104	17.141	17.014	17.265	-0.20669					7	4	2	0	0	0	1.0106	1	169	169		35.618	0.41757	1	33806			86051	7217	59893	59989	95585	95585					0.08458983704770162
VMKKVPLED	9	Unmodified	_VMKKVPLED_					0	0	0		ENST00000482108.1_2_7:94296225-94296471:+|nuORF	ENST00000482108.1_2_7:94296225-94296471:+|nuORF	ENST00000482108.1_2_7:94296225-94296471:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.7989501953125	2	529.79936	1057.58417	-1.2974	-0.00068734	1.5121	0.00080111	0.21475	0.00011377	529.8000147897122	83.414	1.6144	83.414	83.095	84.709	0					97	37	4	0	0	0	0.31247	1	10454	10454		73.975	4.3471	1	5561600			86052	15247	59894	59990	95586	95586					0.057678404024500196
VMKRVVEDTTA	11	Unmodified	_VMKRVVEDTTA_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;nc|ENSG00000149823|Q9UID3-2|VPS51;ENST00000533827.5_1_11:64876997-64879056:+|nuORF;ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENSG00000149823|ENST00000279281|VPS51;ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENSG00000149823|ENST00000279281|VPS51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2457580566406	3	416.892067	1247.65437	-0.60139	-0.00025071	-0.69471	-0.00028962	-1.2961	-0.00054033	416.89141709118053	28.471	0.84668	28.302	28.007	28.854	-0.16897					42	19	3	0	0	0	0.024739	1	1697	1697		22.562	6.0317	1	319030			86053	6122;16334	59895	59991	95587	95587					0.04045094000252902
VMKRVVEDTTA	11	Unmodified	_VMKRVVEDTTA_					0	0	0		ENSG00000149823|ENST00000279281|VPS51;nc|ENSG00000149823|Q9UID3-2|VPS51;ENST00000533827.5_1_11:64876997-64879056:+|nuORF;ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENSG00000149823|ENST00000279281|VPS51;ENST00000534591.1_1_11:64876790-64877821:+|nuORF	ENSG00000149823|ENST00000279281|VPS51	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	416.892067	1247.65437	-1.3668	-0.0005698	0.18162	7.5716E-05	-1.1852	-0.00049409	416.891725153577	28.593	1.0371	28.348	27.801	28.838	-0.24524	0.052855	0.00080454	NaN	22.562	38	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359760			86054	6122;16334	59895	59991							0.04045094000252902
VMLAKPWLD	9	Unmodified	_VMLAKPWLD_					0	0	0		TLK2|p.R158W|1|0.09|ENSG00000146872|chr17:62536278-62536278|C/T|missense_variant	TLK2|p.R158W|1|0.09|ENSG00000146872|chr17:62536278-62536278|C/T|missense_variant	TLK2|p.R158W|1|0.09|ENSG00000146872|chr17:62536278-62536278|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.758056640625	2	536.79662	1071.57869	-0.81018	-0.0004349	-1.7384	-0.00093316	-2.5486	-0.0013681	536.7956531206628	39.821	0.77188	39.59	39.275	40.046	-0.23021					37	19	3	0	0	0	0.024535	1	3352	3352		18.324	1.8513	1	859730			86055	38076	59896	59992	95588	95588					0.04576161610634699
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	528.32861328125	2	528.31772	1054.62089	-0.79455	-0.00041978	0.727	0.00038409	-0.067556	-3.5691E-05	528.3180911520376	77.91	0.86539	77.91	77.792	78.658	0					36	20	2	0	0	0	0.022657	1	9634	9634		110.12	49.148	1	1008500			86056	1555	59897	59993	95589	95589					0.0957613701898481
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.3292236328125	2	528.31772	1054.62089	0.48568	0.00025659	-0.46978	-0.0002482	0.015895	8.3976E-06	528.3175205145488	78.062	0.86774	77.87	77.723	78.591	-0.1921					36	20	3	0	0	0	0.024257	1	9605	9605		77.318	40.158	1	952970			86057	1555	59897	59993	95590	95590					0.0957613701898481
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.3291015625	2	528.31772	1054.62089	-0.3362	-0.00017762	0.51764	0.00027348	0.18144	9.5857E-05	528.317819011578	77.988	0.8479	77.726	77.528	78.376	-0.26202					55	19	5	0	0	0	0.024367	1	9263	9263		62.107	26.489	1	1091200			86058	1555	59897	59993	95591	95591					0.0957613701898481
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant;nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	RASAL2|p.P860Hfs*19|1|0.24|ENSG00000075391|chr1:178458293-178458293|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.3291015625	2	528.31772	1054.62089	0.37023	0.0001956	-0.45909	-0.00024254	-0.088859	-4.6946E-05	528.3172837256752	77.923	1.0625	77.681	77.49	78.552	-0.24232					53	24	3	0	0	0	0.023454	1	9277	9277		93.195	39.844	1	977140			86059	1555	59897	59993	95592	95592					0.0957613701898481
VMLFLISWMS	10	Unmodified	_VMLFLISWMS_					0	0	0		ENST00000603037.2_2_X:73422686-73423058:-|nuORF	ENST00000603037.2_2_X:73422686-73423058:-|nuORF	ENST00000603037.2_2_X:73422686-73423058:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.5496826171875	3	409.548584	1225.62392	0.24031	9.842E-05	3.029	0.0012405	3.2693	0.0013389	409.54970570953697	54.063	1.6668	53.818	53.383	55.05	-0.2453					147	49	4	0	0	0	1.0719	1	5677	5677		36.447	1.2685	1	4274900			86060	17539	59898	59994	95593	95593					0.020136440815122114
VMLGGAVQL	9	Oxidation (M)	_VM(Oxidation (M))LGGAVQL_		VM(1)LGGAVQL		VM(50)LGGAVQL	0	0	1		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	452.2521667480469	2	452.252046	902.489538	-0.55977	-0.00025316	1.3807	0.00062444	0.82096	0.00037128	452.2525995172372	104.54	0.86827	104.41	104.18	105.05	-0.12927					62	26	4	0	0	0	0.64155	1	13005	13005		50.025	10.772	1	1140700			86061	2460	59899	59995	95594	95594		95			0.034393266511074216
VMLHYLLP	8	Unmodified	_VMLHYLLP_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.2698669433594	2	493.280606	984.546659	-0.75849	-0.00037415	-3.6255	-0.0017884	-4.3839	-0.0021625	493.27911682284594	25.777	0.48015	25.605	25.406	25.886	-0.17151					17	11	2	0	0	0	0.027866	1	1201	1201		16.705	0	1	98679			86062	1561	59900	59996	95595	95595					0.053767939274848686
VMLLAALWM	9	Unmodified	_VMLLAALWM_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.313720703125	2	524.290117	1046.56568	-0.4676	-0.00024516	-3.1268	-0.0016394	-3.5944	-0.0018845	524.2879571200181	73.566	0.44965	73.295	73.009	73.459	-0.27126					19	11	3	0	0	0	0.024475	1	8935	8935		29.842	1.5873	1	289290			86063	2736	59901	59997	95596	95596					0.04426007226879847
VMLLETLIL	9	Unmodified	_VMLLETLIL_					0	0	0			REV__nc|ENSG00000054793|O75110-2|ATP9A;REV__ENSG00000166377|ENST00000426216|ATP9B	REV__nc|ENSG00000054793|O75110-2|ATP9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2635498046875	2	522.822304	1043.63005	0.68041	0.00035573	2.4434	0.0012775	3.1238	0.0016332	522.8234747548961	54.508	0.62986	54.302	53.981	54.611	-0.20613					42	16	3	0	0	0	0.024443	1	5749	5749		44.531	5.7249	1	1494400	+		86064	20193;26008	59902	59998	95597	95597					0.1099848558467329
VMLNSRVIPLP	11	Unmodified	_VMLNSRVIPLP_					0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.86962890625	2	619.868108	1237.72166	-0.66004	-0.00040914	2.7871	0.0017276	2.1271	0.0013185	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0429	1	11720	11720		27.047	2.5281	1	5229800	+		86065	19902	59903	59999	95598	95598					0.11231169001871422
VMLPEKLF	8	Unmodified	_VMLPEKLF_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.7825622558594	2	488.780439	975.546325	0.33802	0.00016522	3.4898	0.0017058	3.8279	0.001871	488.7820637509025	56.741	1.3498	56.539	55.934	57.283	-0.20208					92	35	4	0	0	0	0.6248	1	6166	6166		73.975	8.1716	1	6973100			86066	6234	59904	60000	95599	95599					0.057573742076328926
VMLPEKLF	8	Unmodified	_VMLPEKLF_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7827453613281	2	488.780439	975.546325	0.5948	0.00029073	3.1544	0.0015418	3.7492	0.0018325	488.78187985732905	56.787	1.18	56.562	56.029	57.209	-0.2248					85	30	4	0	0	0	0.50239	1	6137	6137		85.359	24.388	1	6569200			86067	6234	59904	60000	95600	95600					0.057573742076328926
VMLPVMLF	8	Unmodified	_VMLPVMLF_					0	0	0		ENSG00000176925|ENST00000322110|OR51F2;nc|ENSG00000176925|Q8NH61|OR51F2	ENSG00000176925|ENST00000322110|OR51F2	ENSG00000176925|ENST00000322110|OR51F2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.96148681640625	2	475.26611	948.517667	1.7819	0.00084688	4.1836	0.0019883	5.9655	0.0028352	475.2704318123973	63.451	0.28921	63.505	63.338	63.627	0.054104					9	7	2	0	0	0	0.027866	1	7356	7356		16.705	2.0409	1	68168			86068	8687	59905	60001	95601	95601					0.041349333068524174
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_		VM(1)LSTPVAEA		VM(74)LSTPVAEA	0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.79638671875	2	517.26535	1032.51615	0.054823	2.8358E-05	0.044952	2.3252E-05	0.099775	5.161E-05	517.2651192153754	58.332	2.271	58.332	57.68	59.951	0					148	61	4	0	0	0	0.03519	1	6592	6592		74.255	15.473	1	3152200			86069	10708	59906	60002	95602	95602		449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_		VM(1)LSTPVAEA		VM(96)LSTPVAEA	0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.2653198242188	2	517.26535	1032.51615	0.29885	0.00015458	-0.47473	-0.00024556	-0.17588	-9.0976E-05	517.2649797206891	57.385	0.87627	57.211	56.769	57.646	-0.1749					72	23	4	0	0	0	0.42446	3	6423	6423;6435;6447		96.19	29.761	1	4618800			86070	10708	59906	60002	95603;95604;95605	95603		449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_		VM(1)LSTPVAEA		VM(85)LSTPVAEA	0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.796142578125	2	517.26535	1032.51615	0.10485	5.4237E-05	0.069773	3.6091E-05	0.17463	9.0328E-05	517.26508534432	58.627	2.0313	58.44	57.743	59.774	-0.18705					157	55	4	0	0	0	0.03519	1	6602	6602		84.916	28.194	1	2908800			86071	10708	59906	60002	95606	95606		449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_		VM(1)LSTPVAEA		VM(96)LSTPVAEA	0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2652587890625	2	517.26535	1032.51615	-0.75912	-0.00039266	0.55902	0.00028916	-0.2001	-0.0001035	517.2655387136089	57.086	0.79276	57.181	56.815	57.608	0.095306					61	21	4	0	0	0	0.42446	2	6323	6323;6336		96.19	29.761	1	4951700			86072	10708	59906	60002	95607;95608	95607		449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_		VM(1)LSTPVAEA		VM(85)LSTPVAEA	0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.7955322265625	2	517.26535	1032.51615	-0.41169	-0.00021296	0.38785	0.00020062	-0.023848	-1.2336E-05	517.2653400563315	58.221	2.1549	58.312	57.683	59.838	0.091217					160	58	3	0	0	0	0.03519	1	6498	6498		84.916	10.66	1	3233500			86073	10708	59906	60002	95609	95609		449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_					0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.26535	1032.51615	-0.26041	-0.0001347	0.31328	0.00016205	0.05287	2.7348E-05	517.2653615953686	58.601	1.6203	58.413	57.964	59.584	-0.18795	0.023013	0.00021852	NaN	74.255	74	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804790			86074	10708	59906	60002				449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_					0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.26535	1032.51615	-0.7884	-0.00040781	1.3805	0.0007141	0.59213	0.00030629	517.2657739594833	57.371	0.79232	57.203	56.932	57.725	-0.1672	-0.010869	0.0011101	NaN	96.19	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1249600			86075	10708	59906	60002				449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_					0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	517.26535	1032.51615	0.28362	0.00014671	-0.024591	-1.272E-05	0.25903	0.00013399	517.265134529981	58.575	1.2545	58.394	58.101	59.356	-0.18133	0.0034237	-0.00013102	NaN	74.255	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	875990			86076	10708	59906	60002				449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_					0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	517.26535	1032.51615	0.27297	0.0001412	0.26398	0.00013655	0.53695	0.00027774	517.2651926948009	57.401	0.81538	57.199	56.962	57.777	-0.20209	-0.015663	-4.4981E-05	NaN	96.19	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100800			86077	10708	59906	60002				449			0.0011897075175966165
VMLSTPVAEA	10	Oxidation (M)	_VM(Oxidation (M))LSTPVAEA_					0	0	1		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.26535	1032.51615	0.67688	0.00035013	-0.41856	-0.00021651	0.25832	0.00013362	517.2648047748027	58.692	1.6489	58.45	58.044	59.692	-0.24166	0.059918	-0.00053859	NaN	74.255	72	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687130			86078	10708	59906	60002				449			0.0011897075175966165
VMLSTPVAEA	10	Unmodified	_VMLSTPVAEA_					0	0	0		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.266845703125	2	509.267893	1016.52123	-0.62628	-0.00031894	0.34374	0.00017505	-0.28254	-0.00014389	509.26786794442546	62.245	0.62704	62.019	61.65	62.277	-0.22663					59	17	6	0	0	0	0.30843	1	7219	7219		108.09	36.792	1	5926600			86079	10708	59906	60003	95610	95610					0.0136327461439123
VMLSTPVAEA	10	Unmodified	_VMLSTPVAEA_					0	0	0		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.266357421875	2	509.267893	1016.52123	-0.90773	-0.00046228	0.55643	0.00028337	-0.3513	-0.00017891	509.26800632983526	61.9	0.57803	61.963	61.582	62.16	0.062763					48	15	5	0	0	0	0.60198	1	7121	7121		76.774	7.9873	1	6078500			86080	10708	59906	60003	95611	95611					0.0136327461439123
VMLSTPVAEA	10	Unmodified	_VMLSTPVAEA_					0	0	0		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.2682189941406	2	509.267893	1016.52123	-0.21204	-0.00010799	0.2944	0.00014993	0.082356	4.1941E-05	509.2678316208108	62.256	0.5827	62.042	61.7	62.283	-0.21375					65	14	7	0	0	0	0.16213	2	6984	6984;6998		125.81	49.04	1	2242500			86081	10708	59906	60003	95612;95613	95612					0.0136327461439123
VMLSTPVAEA	10	Unmodified	_VMLSTPVAEA_					0	0	0		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.2679748535156	2	509.267893	1016.52123	-0.99794	-0.00050822	0.93247	0.00047488	-0.065475	-3.3344E-05	509.2682643148187	62.226	0.68961	62.048	61.654	62.343	-0.17781					30	17	2	0	0	0	0.05	2	7003	6992;7003		148.04	73.479	1	2380500			86082	10708	59906	60003	95614;95615	95615					0.0136327461439123
VMLSTPVAEA	10	Unmodified	_VMLSTPVAEA_					0	0	0		nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	nc|ENSG00000232629|P05538-2|HLA-DQB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.2677917480469	2	509.267893	1016.52123	-0.4324	-0.00022021	0.36994	0.0001884	-0.062469	-3.1814E-05	509.26797644753566	62.363	0.50764	62.105	61.82	62.327	-0.25824					50	12	6	0	0	0	0.26127	1	6997	6997		113.41	39.437	1	2273700			86083	10708	59906	60003	95616	95616					0.0136327461439123
VMLVAVLNL	9	Oxidation (M)	_VM(Oxidation (M))LVAVLNL_		VM(1)LVAVLNL		VM(42)LVAVLNL	0	0	1		ENST00000398319.6_1_22:24431931-24432574:+|nuORF	ENST00000398319.6_1_22:24431931-24432574:+|nuORF	ENST00000398319.6_1_22:24431931-24432574:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.30078125	2	494.298996	986.583439	0.57173	0.00028261	2.7614	0.001365	3.3331	0.0016476	494.3003703614101	96.104	4.0884	96.111	95.265	99.353	0.0065002					233	94	6	0	0	0	0.75282	1	12303	12303		42.474	13.325	1	37513000			86084	13621	59907	60004	95617	95617		494			0.08961045753380859
VMLVAVLNL	9	Unmodified	_VMLVAVLNL_					0	0	0		ENST00000398319.6_1_22:24431931-24432574:+|nuORF	ENST00000398319.6_1_22:24431931-24432574:+|nuORF	ENST00000398319.6_1_22:24431931-24432574:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.3037414550781	2	486.301539	970.588524	-0.23737	-0.00011543	3.583	0.0017424	3.3456	0.001627	486.3032593590347	47.428	1.5784	47.332	46.897	48.475	-0.096653					99	42	5	0	0	0	0.72268	1	4620	4620		44.531	0.41427	1	15954000			86085	13621	59907	60005	95618	95618					0.10205349616001058
VMLVTSLVAL	10	Oxidation (M)	_VM(Oxidation (M))LVTSLVAL_		VM(1)LVTSLVAL		VM(53)LVTSLVAL	0	0	1		nc|ENSG00000117281|O95971-2|CD160;nc|ENSG00000117281|O95971-4|CD160;ENSG00000117281|ENST00000369288|CD160;nc|ENSG00000117281|O95971-3|CD160	nc|ENSG00000117281|O95971-2|CD160	nc|ENSG00000117281|O95971-2|CD160	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.3191528320312	2	531.317386	1060.62022	-0.77263	-0.00041051	3.7133	0.0019729	2.9406	0.0015624	531.3194526567283	93.654	1.3564	93.649	93.2	94.557	-0.0041962					98	32	4	0	0	0	0.91051	1	11847	11847		53.351	20.539	1	4020300			86086	3619	59908	60006	95619	95619		138			0.09233297579316968
VMLVVICLL	9	Oxidation (M)	_VM(Oxidation (M))LVVICLL_		VM(1)LVVICLL		VM(49)LVVICLL	0	0	1		ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8034973144531	2	509.805599	1017.59665	-0.17148	-8.7423E-05	-3.589	-0.0018297	-3.7605	-0.0019171	509.80368236575634	98.113	1.9328	98.113	97.771	99.704	0					58	44	2	0	0	0	0.65391	1	12550	12550		49.211	6.7363	1	902990			86087	10677	59909	60007	95620	95620		448			0.08855160541133955
VMLWQTLDL	9	Unmodified	_VMLWQTLDL_					0	0	0			REV__PDXDC1-ATP2A1|1|fusion	REV__PDXDC1-ATP2A1|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2705078125	2	559.79936	1117.58417	-0.96628	-0.00054092	-3.4033	-0.0019052	-4.3696	-0.0024461	559.7973490787326	62.496	0.40181	62.496	62.409	62.811	0					13	9	2	0	0	0	0.021513	1	7309	7309		93.195	34.414	1	333690	+		86088	28160	59910	60008	95621	95621					0.03007840402437978
VMMEAILEV	9	Unmodified	_VMMEAILEV_					0	0	0		ENST00000550482.1_1_12:54676362-54677673:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF	ENST00000550482.1_1_12:54676362-54677673:+|nuORF	ENST00000550482.1_1_12:54676362-54677673:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.2713623046875	2	517.766671	1033.51879	-0.80241	-0.00041546	2.7721	0.0014353	1.9697	0.0010198	518.272194321954	84.505	0.91531	84.432	84.091	85.007	-0.072769					44	21	4	0	0	0	0.024541	1	10621	10621		17.365	0	1	200620			86089	16581	59911	60009	95622	95622					0.0033710288510064856
VMMQLRKW	8	Unmodified	_VMMQLRKW_					0	0	0		SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	SMARCAD1|p.M781Wfs*25|1|0.2|ENSG00000163104|chr4:94278970-94278970|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	546.780029296875	2	546.296265	1090.57798	-1.1365	-0.00062084	2.6645	0.0014556	1.528	0.00083475	546.2975501048041	30.231	1.9397	30.24	29.356	31.296	0.0086708					84	46	3	0	0	0	0.027866	1	2044	2044		46.766	0	1	162410			86090	37905	59912	60010	95623	95623					0.03631043689915714
VMNPVIQAV	9	Unmodified	_VMNPVIQAV_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.2966613769531	2	485.773145	969.531738	-0.05763	-2.7995E-05	1.0856	0.00052733	1.0279	0.00049934	485.77356581639367	67.548	0.47942	67.548	67.165	67.644	0					19	11	2	0	0	0	0.020004	1	8054	8054		82.305	0	1	1688400			86091	8449	59913	60011	95624	95624					0.045753020594929694
VMNPVIQAV	9	Unmodified	_VMNPVIQAV_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2971496582031	2	485.773145	969.531738	-0.040029	-1.9445E-05	1.265	0.00061453	1.225	0.00059508	485.7736180628939	67.871	0.48251	67.583	67.227	67.71	-0.28834					26	11	3	0	0	0	0.024263	1	8067	8067		71.296	32.49	1	1553600			86092	8449	59913	60011	95625	95625					0.045753020594929694
VMNPVIQAV	9	Unmodified	_VMNPVIQAV_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	485.773145	969.531738	0.89151	0.00043307	-0.048895	-2.3752E-05	0.84261	0.00040932	485.77305234980895	67.908	0.3686	67.653	67.412	67.78	-0.25516	0.05087	-0.00071762	NaN	66.429	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357110			86093	8449	59913	60011							0.045753020594929694
VMNPVIQAV	9	Unmodified	_VMNPVIQAV_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	485.773145	969.531738	0.13094	6.3609E-05	0.63765	0.00030976	0.7686	0.00037336	485.77339726347276	67.89	0.36903	67.657	67.387	67.756	-0.23376	0.054735	-5.0604E-05	NaN	66.429	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400060			86094	8449	59913	60011							0.045753020594929694
VMNPVIQAV	9	Unmodified	_VMNPVIQAV_					0	0	0		nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;MGA|p.M3028*|1|0.25|ENSG00000174197|chr15:41767161-41767161|A/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF	nc|ENSG00000174197|Q8IWI9-3|MGA	nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	485.773145	969.531738	0.21972	0.00010673	0.48041	0.00023337	0.70012	0.0003401	485.77323815978826	67.873	0.45768	67.635	67.289	67.747	-0.23814	0.032827	-0.00020337	NaN	66.429	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280850			86095	8449	59913	60011							0.045753020594929694
VMPAPTLAL	9	Unmodified	_VMPAPTLAL_					0	0	0		ENST00000578845.2_2_9:21971004-21971304:-|nuORF	ENST00000578845.2_2_9:21971004-21971304:-|nuORF	ENST00000578845.2_2_9:21971004-21971304:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.766845703125	2	456.764789	911.515025	0.30083	0.00013741	3.5765	0.0016336	3.8773	0.001771	456.76631185682055	39.198	1.3541	39.198	38.597	39.951	0					89	37	4	0	0	0	0.33184	2	3340	3340;3351		71.378	5.5747	1	3722500			86096	17135	59914	60012	95626;95627	95626					0.05572801173525477
VMPCYEKF	8	Unmodified	_VMPCYEKF_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3263854980469	2	508.732632	1015.45071	0.11484	5.8423E-05	1.5717	0.00079958	1.6865	0.000858	508.73349045681294	56.716	0.88939	56.514	56.211	57.1	-0.20209					29	23	2	0	0	0	0.027866	1	6148	6148		49.211	0	1	153910	+		86097	32200	59915	60013	95628	95628					-0.05639721974910117
VMPFHVGLI	9	Unmodified	_VMPFHVGLI_					0	0	0			REV__ENST00000429033.1_1_21:32433463-32434067:-|nuORF	REV__ENST00000429033.1_1_21:32433463-32434067:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7883605957031	2	506.786056	1011.55756	-0.36364	-0.00018429	2.2205	0.0011253	1.8569	0.00094105	506.78675821252	49.188	1.5551	49.035	48.261	49.816	-0.15277					97	42	5	0	0	0	0.48384	1	5042	5042		60.404	1.6217	1	3626500	+		86098	32327	59916	60014	95629	95629					0.05224196301799111
VMPLDLFVPF	10	Unmodified	_VMPLDLFVPF_					0	0	0			REV__PKHD1|p.V88M|1|0.56|ENSG00000170927|chr6:52082411-52082411|C/T|missense_variant	REV__PKHD1|p.V88M|1|0.56|ENSG00000170927|chr6:52082411-52082411|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.3200073242188	2	589.319928	1176.6253	0.83332	0.00049109	-2.1945	-0.0012932	-1.3612	-0.00080216	589.3185326467396	53.922	0.694	54.02	53.667	54.361	0.098015					55	19	4	0	0	0	1.1056	1	5804	5804		31.955	2.8053	1	3194800	+		86099	37381	59917	60015	95630	95630					0.04405601441908402
VMPLLPPAL	9	Unmodified	_VMPLLPPAL_					0	0	0		ENST00000269919.10_1_19:18475054-18475243:+|nuORF	ENST00000269919.10_1_19:18475054-18475243:+|nuORF	ENST00000269919.10_1_19:18475054-18475243:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.2491760253906	2	475.790807	949.56706	1.2062	0.00057388	2.4949	0.0011871	3.7011	0.0017609	475.7919015756154	51.34	0.81128	51.34	50.992	51.803	0					38	22	2	0	0	0	0.024475	1	5471	5471		29.842	0	1	518410			86100	11639	59918	60016	95631	95631					0.09025964587283397
VMPLLPPAL	9	Unmodified	_VMPLLPPAL_					0	0	0		ENST00000269919.10_1_19:18475054-18475243:+|nuORF	ENST00000269919.10_1_19:18475054-18475243:+|nuORF	ENST00000269919.10_1_19:18475054-18475243:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	475.790807	949.56706	-0.71144	-0.00033849	4.3268	0.0020586	3.6153	0.0017201	475.79280488334103	51.284	0.64359	51.371	51.001	51.644	0.087006	0.00020506	0.00060848	NaN	29.842	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542660			86101	11639	59918	60016							0.09025964587283397
VMPNLAPPI	9	Oxidation (M)	_VM(Oxidation (M))PNLAPPI_		VM(1)PNLAPPI		VM(71)PNLAPPI	0	0	1			REV__ENSG00000181616|ENST00000322653|OR52H1;REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181616|ENST00000322653|OR52H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.2703552246094	2	484.267696	966.520839	-0.56038	-0.00027137	4.2289	0.0020479	3.6685	0.0017766	484.2696104545332	31.034	0.74202	31.103	30.744	31.486	0.068962					57	17	4	0	0	0	0.33184	1	2004	2004		71.378	16.602	1	2863200	+		86102	27413;27380	59919	60017	95632	95632		814			0.03623899685203469
VMPTPRPS	8	Unmodified	_VMPTPRPS_					0	0	0			REV__ENST00000315293.6_2_9:67031499-67031610:-|nuORF	REV__ENST00000315293.6_2_9:67031499-67031610:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	442.7348937988281	2	442.736563	883.458573	0.051574	2.2834E-05	-3.7811	-0.001674	-3.7296	-0.0016512	442.734834374609	23.462	1.2635	23.26	22.967	24.231	-0.20193					77	28	4	0	0	0	0.71833	1	966	966		65.803	2.8247	1	4046600	+		86103	30262	59920	60018	95633	95633					0.012181733368834102
VMQIVKNMV	9	Unmodified	_VMQIVKNMV_					0	0	0			REV__MGRN1-SNX29|1|fusion	REV__MGRN1-SNX29|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3196411132812	2	531.29593	1060.57731	-0.054515	-2.8964E-05	3.624	0.0019254	3.5694	0.0018964	531.7978300435605	104.05	0.85432	104.05	103.62	104.47	-0.0032196					28	20	2	0	0	0	0.024323	1	13249	13249		44.117	0	1	78100	+		86104	36378	59921	60019	95634	95634					0.04944204250227813
VMRKKRGR	8	Unmodified	_VMRKKRGR_					0	0	0		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;HELLS|p.Y469Mfs*16|1|0.3|ENSG00000119969|chr10:94588305-94588305|T/-|frameshift_variant;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;ENST00000462057.2_1_10:96313888-96330576:+|nuORF	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.8182373046875	2	515.824369	1029.63419	-0.76475	-0.00039448	-4.0272	-0.0020773	-4.792	-0.0024718	515.8222806404979	21.807	0.52908	21.595	21.363	21.892	-0.2128					16	10	2	0	0	0	0.027866	1	661	661		33.516	10.473	1	154780			86105	3781	59922	60020	95635	95635					0.12055432641614061
VMRLVKLL	8	Unmodified	_VMRLVKLL_					0	0	0		nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;CACNA1D|p.R1332K|1|0.51|ENSG00000157388|chr3:53770503-53770503|G/A|missense_variant;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3105773925781	2	486.325348	970.636143	0.38712	0.00018826	3.0764	0.0014961	3.4635	0.0016844	486.3266252635544	74.856	0.44582	74.856	74.509	74.955	0					17	10	2	0	0	0	0.027866	1	9150	9150		13.775	6.085	1	109460			86106	18408;6175;18133	59923	60021	95636	95636					0.14965048606859455
VMRRLSSL	8	Unmodified	_VMRRLSSL_					0	0	0		ENST00000493184.5_1_20:18474605-18477811:-|nuORF	ENST00000493184.5_1_20:18474605-18477811:-|nuORF	ENST00000493184.5_1_20:18474605-18477811:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7311706542969	2	481.284211	960.55387	-0.23583	-0.0001135	-3.5499	-0.0017085	-3.7857	-0.001822	481.28215467376737	31.871	0.36085	31.883	31.702	32.063	0.011797					11	8	2	0	0	0	0.027866	1	2153	2153		30.504	1.3541	1	101110			86107	15496	59924	60022	95637	95637					0.07201526527921942
VMSDRYLN	8	Unmodified	_VMSDRYLN_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.2565612792969	2	499.242209	996.469866	-0.12639	-6.3097E-05	1.7912	0.00089423	1.6648	0.00083113	499.2433272855628	79.722	1.0019	79.722	79.119	80.12	0					43	23	3	0	0	0	0.027866	1	9857	9857		37.159	3.6435	1	189660	+		86108	23687	59925	60023	95638	95638					-0.028510493596513697
VMSRVGTAQ	9	Unmodified	_VMSRVGTAQ_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000478311.1_1_2:27587269-27587801:-|nuORF;EIF2B4|p.A424S|1|0.18|ENSG00000115211|chr2:27364820-27364820|C/A|missense_variant	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	474.7856140136719	2	474.750201	947.48585	0.18335	8.7047E-05	-0.7814	-0.00037097	-0.59805	-0.00028392	474.7496636159338	33.832	1.0146	33.889	33.245	34.26	0.056568					40	25	2	0	0	0	0.024427	1	2477	2477		26.693	0	1	130000			86109	3418	59926	60024	95639	95639					0.01000656877261008
VMTGPLLH	8	Unmodified	_VMTGPLLH_					0	0	0			REV__ENSG00000149798|ENST00000279249|CDC42EP2	REV__ENSG00000149798|ENST00000279249|CDC42EP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	434.24139404296875	2	434.241481	866.468409	0.26381	0.00011456	-1.1283	-0.00048996	-0.86449	-0.0003754	434.2398725292002	97.606	0.73466	97.445	97.174	97.908	-0.16106					32	16	3	0	0	0	1.0017	1	12061	12061		37.028	3.5129	1	142660	+		86110	24701	59927	60025	95640	95640					0.02983361342239732
VMVDGKPVNL	10	Unmodified	_VMVDGKPVNL_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.294921875	2	536.296985	1070.57942	-0.31968	-0.00017144	-2.2274	-0.0011945	-2.5471	-0.001366	536.295725604554	74.774	0.83963	74.511	74.231	75.07	-0.26326					41	19	3	0	0	0	0.50517	1	8833	8833		87.696	5.4559	1	1376300			86111	4998	59928	60026	95641	95641					0.04694956259686478
VMVLKMNKL	9	Unmodified	_VMVLKMNKL_					0	0	0		ENSG00000107140|ENST00000336395|TESK1;ENST00000498522.5_1_9:35605559-35607650:+|nuORF	ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.32666015625	2	538.321948	1074.62934	-0.64218	-0.0003457	2.1676	0.0011669	1.5255	0.00082119	538.3217849734116	100.84	0.26031	100.85	100.7	100.96	0.0090256					12	5	3	0	0	0	0.024477	1	12868	12868		35.618	11.416	1	97058			86112	2825	59929	60027	95642	95642					0.09501367663983729
VMVLKMNKL	9	Unmodified	_VMVLKMNKL_					0	0	0		ENSG00000107140|ENST00000336395|TESK1;ENST00000498522.5_1_9:35605559-35607650:+|nuORF	ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	MSMS	OPSCC_40_ClassI_Rep-2	5	538.3244018554688	2	538.321948	1074.62934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.76	1	100.64	100.14	101.14	-0.12504								0	0	0	0.61872	1	12512	12512		37.159	2.9866	1				86113	2825	59929	60027	95643	95643					0.09501367663983729
VMVLPILSTG	10	Oxidation (M)	_VM(Oxidation (M))VLPILSTG_		VM(1)VLPILSTG		VM(48)VLPILSTG	0	0	1			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3034057617188	2	523.301736	1044.58892	0.47324	0.00024765	2.705	0.0014155	3.1782	0.0016632	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.9856	1	10708	10708		47.916	9.1095	1	13836000	+		86114	26902	59930	60028	95644	95644		796			0.06840724545190824
VMVMVVRK	8	Unmodified	_VMVMVVRK_					0	0	0			REV__ENST00000356352.6_1_10:11962921-11963005:-|nuORF	REV__ENST00000356352.6_1_10:11962921-11963005:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.7588195800781	2	481.287908	960.561264	-0.36072	-0.00017361	0.29942	0.00014411	-0.061298	-2.9502E-05	481.2878897189565	21.305	1.2602	21.377	20.91	22.17	0.071487					50	25	3	0	0	0	0.027866	1	655	655		23.037	13.566	1	149810	+		86115	30791	59931	60029	95645	95645					0.07940542803987682
VMVTEEKK	8	Unmodified	_VMVTEEKK_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.2821044921875	2	482.26261	962.510668	-0.73979	-0.00035677	-2.2072	-0.0010644	-2.947	-0.0014212	482.2614699130225	46.575	0.3795	46.422	46.242	46.622	-0.15301					17	10	2	0	0	0	0.027866	1	4565	4565		42.474	18.272	1	477180			86116	8322	59932	60030	95646	95646					0.027912919599771158
VMVVLVVNV	9	Unmodified	_VMVVLVVNV_					0	0	0			REV__ENSG00000264717|ENST00000576178|NPY4R2	REV__ENSG00000264717|ENST00000576178|NPY4R2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	486.7832946777344	2	486.301539	970.588524	0.062434	3.0362E-05	3.0543	0.0014853	3.1167	0.0015157	486.3028525755756	31.9	0.68061	31.715	31.4	32.081	-0.18503					23	15	2	0	0	0	0.024412	1	2203	2203		24.203	0	1	191240	+		86117	28570	59933	60031	95647	95647					0.10205349616023796
VMWLLAFL	8	Oxidation (M)	_VM(Oxidation (M))WLLAFL_		VM(1)WLLAFL		VM(44)WLLAFL	0	0	1			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7850341796875	2	504.782982	1007.55141	-0.34095	-0.00017211	1.7967	0.00090696	1.4558	0.00073485	504.7838187807542	98.035	1.7286	97.87	97.125	98.853	-0.1652					69	37	2	0	0	0	0.9599	1	12207	12207		43.626	10.133	1	974710	+		86118	23876	59934	60032	95648	95648		707			0.047936780702571014
VMYKNRNL	8	Unmodified	_VMYKNRNL_					0	0	0			REV__nc|ENSG00000180287|Q8N7P1-3|PLD5	REV__nc|ENSG00000180287|Q8N7P1-3|PLD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.777099609375	2	519.281669	1036.54878	-0.88643	-0.00046031	0.24701	0.00012827	-0.63941	-0.00033204	519.2818125638408	29.335	0.86691	29.414	29.016	29.883	0.078344					27	21	2	0	0	0	0.027866	1	1771	1771		20.482	0	1	119360	+		86119	27328	59935	60033	95649	95649					0.03197222665312438
VNAACPAPP	9	Unmodified	_VNAACPAPP_					0	0	0			REV__nc|ENSG00000172059|O14901-2|KLF11	REV__nc|ENSG00000172059|O14901-2|KLF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2403259277344	2	420.207638	838.400723	0.19768	8.3067E-05	-1.5893	-0.00066783	-1.3916	-0.00058477	420.2069806757669	37.253	0.26552	37.285	37.074	37.339	0.032269					8	6	2	0	0	0	0.024487	1	2956	2956		11.511	0	1	44583	+		86120	26631	59936	60034	95650	95650					-0.024940885885712305
VNAKLSPLN	9	Unmodified	_VNAKLSPLN_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.79766845703125	2	478.282192	954.549831	0.047671	2.28E-05	-0.23155	-0.00011075	-0.18388	-8.7948E-05	478.2819762937223	50.43	0.7103	50.15	49.839	50.549	-0.27977					32	18	4	0	0	0	0.024457	1	5088	5088		29.15	15.012	1	676230			86121	7358	59937	60035	95651	95651					0.0707376030584328
VNALAKQVM	9	Unmodified	_VNALAKQVM_					0	0	0		ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.27752685546875	2	487.278595	972.542637	-1.0632	-0.00051807	-0.97105	-0.00047317	-2.0342	-0.00099124	487.2779947779413	40.586	0.91746	40.356	40.046	40.964	-0.23028					57	24	3	0	0	0	0.36105	1	3510	3510		68.485	0	1	2642700			86122	4173	59938	60036	95652	95652					0.0552670443378247
VNALGLPK	8	Unmodified	_VNALGLPK_					0	0	0		nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	nc|ENSG00000129116|Q8WX93-4|PALLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.547607421875	2	406.255446	810.496338	0.82798	0.00033637	3.1119	0.0012642	3.9398	0.0016006	406.2565991303471	40.358	0.9425	40.246	39.83	40.773	-0.11223					53	25	3	0	0	0	0.027866	1	3497	3497		12.959	4.7279	1	334450			86123	18259	59939	60037	95653	95653					0.08351007593989834
VNARDEDP	8	Unmodified	_VNARDEDP_					0	0	0			REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.7642517089844	2	458.211963	914.409374	-0.14859	-6.8084E-05	2.635	0.0012074	2.4864	0.0011393	458.2125907521215	36.1	0.27181	36.138	35.927	36.199	0.038044					10	7	2	0	0	0	0.027866	1	2764	2764		16.473	0	1	91470	+		86124	23080	59940	60038	95654	95654					-0.051254434183874764
VNARPHKVD	9	Unmodified	_VNARPHKVD_					0	0	0		ENST00000432375.1_1_6:32293195-32293354:+|nuORF	ENST00000432375.1_1_6:32293195-32293354:+|nuORF	ENST00000432375.1_1_6:32293195-32293354:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.2716064453125	2	518.28834	1034.56213	-0.93904	-0.00048669	-3.7357	-0.0019362	-4.6747	-0.0024228	518.2862260157689	85.073	0.16447	85.098	84.995	85.159	0.025536					5	3	2	0	0	0	0.024477	1	10584	10584		27.882	13.017	1	62031			86125	14204	59941	60039	95655	95655					0.04622796768899207
VNAVPRPI	8	Unmodified	_VNAVPRPI_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2430114746094	2	433.266345	864.518136	-0.90505	-0.00039213	1.0713	0.00046414	0.16621	7.2012E-05	433.266595269838	46.223	1.0701	46.072	45.789	46.859	-0.15156					69	29	4	0	0	0	0.027866	1	4659	4659		26.796	0	1	1989600			86126	1600	59942	60040	95656	95656					0.08045812342561476
VNCNGTEDEL	10	Unmodified	_VNCNGTEDEL_					0	0	0		CON__ENSEMBL:ENSBTAP00000031360	CON__ENSEMBL:ENSBTAP00000031360	CON__ENSEMBL:ENSBTAP00000031360	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.818603515625	2	547.226953	1092.43935	-0.87327	-0.00047788	0.7554	0.00041338	-0.11787	-6.4504E-05	547.2268659293954	64.75	0.31425	64.495	64.307	64.621	-0.25563					10	7	2	0	0	0	0.03519	1	7342	7342		41.427	17.904	1	84592		+	86127	490	59943	60041	95657	95657					-0.1031687253534983
VNCTLTATK	9	Unmodified	_VNCTLTATK_					0	0	0			REV__ATP8A1|p.G412A|1|0.16|ENSG00000124406|chr4:42574679-42574679|C/G|missense_variant	REV__ATP8A1|p.G412A|1|0.16|ENSG00000124406|chr4:42574679-42574679|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.7848205566406	2	475.75241	949.490267	0.38976	0.00018543	-0.74434	-0.00035412	-0.35458	-0.00016869	475.75190118185037	34.236	0.58041	34.231	33.988	34.568	-0.0045624					24	14	2	0	0	0	0.024457	1	2528	2528		15.642	0	1	82754	+		86128	19187	59944	60042	95658	95658					0.013501213001518408
VNDFIIKAS	9	Unmodified	_VNDFIIKAS_					0	0	0		ENSG00000150768|ENST00000280346|DLAT;ENST00000533297.1_1_11:111896132-111933256:+|nuORF	ENSG00000150768|ENST00000280346|DLAT	ENSG00000150768|ENST00000280346|DLAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	502.7868957519531	2	503.782025	1005.5495	0.19052	9.598E-05	0.54869	0.00027642	0.73921	0.0003724	503.78225209444145	87.621	0.68369	87.621	87.278	87.962	0					49	16	4	0	0	0	0.024397	1	11004	11004		39.253	0	1	1646500			86129	6154	59945	60043	95659	95659					0.04694340586001999
VNDVYNFN	8	Unmodified	_VNDVYNFN_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.795166015625	2	492.724707	983.43486	-0.42566	-0.00020973	-3.1418	-0.0015481	-3.5675	-0.0017578	492.72304866238494	24.879	0.57187	24.879	24.563	25.135	0					18	12	2	0	0	0	0.027866	1	1142	1142		34.173	20.397	1	63400			86130	9816	59946	60044	95660	95660					-0.057519688959587256
VNEESHLTE	9	Unmodified	_VNEESHLTE_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7607421875	2	529.24346	1056.47237	-0.42235	-0.00022353	-3.1094	-0.0016456	-3.5317	-0.0018691	529.2418457123142	45.255	0.50208	45.044	44.715	45.217	-0.21109					20	13	2	0	0	0	0.024523	1	4260	4260		37.159	8.0096	1	173120			86131	648	59947	60045	95661	95661					-0.05360922420982206
VNEGGATILI	10	Unmodified	_VNEGGATILI_					0	0	0			REV__ENSG00000130377|ENST00000588485|ACSBG2	REV__ENSG00000130377|ENST00000588485|ACSBG2	MSMS	OPSCC_39_ClassI_Rep-3	3	493.7826843261719	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.271	1	70.283	69.783	70.783	0.012421								0	0	0	0.4525	1	8408	8408		69.628	0	1		+		86132	23109	59948	60046	95662	95662					0.05106036723384477
VNELEKFD	8	Unmodified	_VNELEKFD_					0	0	0		CON__Q05443	CON__Q05443	CON__Q05443	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.3003234863281	2	497.248015	992.481476	-0.058933	-2.9304E-05	0.61153	0.00030408	0.5526	0.00027478	497.2482049999199	63.815	1.1272	63.622	63.263	64.391	-0.19243					70	28	5	0	0	0	0.027866	1	7350	7350		47.916	21.223	1	662150		+	86133	534	59949	60047	95663	95663					-0.015065290646703033
VNELLQRW	8	Unmodified	_VNELLQRW_					0	0	0		nc|ENSG00000161013|Q9UQ53-3|MGAT4B	nc|ENSG00000161013|Q9UQ53-3|MGAT4B	nc|ENSG00000161013|Q9UQ53-3|MGAT4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7357788085938	2	529.293091	1056.57163	-0.9353	-0.00049505	2.2533	0.0011927	1.318	0.00069761	529.2958073720372	60.373	0.4452	60.197	59.998	60.443	-0.1761					12	10	2	0	0	0	0.027866	1	6733	6733		51.335	24.539	1	41817			86134	18430	59950	60048	95664	95664					0.04560565054430299
VNEPIHMNV	9	Unmodified	_VNEPIHMNV_					0	0	0			REV__ENSG00000129810|ENST00000412997|SGO1	REV__ENSG00000129810|ENST00000412997|SGO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7877807617188	2	526.763309	1051.51206	-0.80126	-0.00042207	3.2413	0.0017074	2.44	0.0012853	526.7649909981313	29.543	0.41861	29.37	29.199	29.618	-0.17258					12	9	2	0	0	0	0.024436	1	1813	1813		23.042	5.6775	1	53978	+		86135	23064	59951	60049	95665	95665					-0.011630739512838772
VNERGSSSDV	10	Unmodified	_VNERGSSSDV_					0	0	0			REV__ENSG00000144233|ENST00000272647|AMMECR1L	REV__ENSG00000144233|ENST00000272647|AMMECR1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7882690429688	2	525.246535	1048.47852	-0.85121	-0.00044709	-4.3112	-0.0022645	-5.1625	-0.0027116	525.2426761603376	29.705	0.33811	29.46	29.316	29.654	-0.24524					18	7	3	0	0	0	0.03519	1	1840	1840		28.081	11.608	1	80256	+		86136	24319	59952	60050	95666	95666					-0.0437840418946962
VNESSLDSVH	10	Unmodified	_VNESSLDSVH_					0	0	0		ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant;ENSG00000138658|ENST00000505019|ZGRF1;ENST00000473015.5_1_4:113483525-113509083:-|nuORF	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	ZGRF1|p.R2022Kfs*8|1|0.35|ENSG00000138658|chr4:112539970-112539971|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2692260742188	2	543.756735	1085.49892	-0.78153	-0.00042496	-3.1276	-0.0017006	-3.9091	-0.0021256	543.7547782363254	69.737	1.5368	69.469	68.7	70.237	-0.26725					82	36	3	0	0	0	0.03519	1	8182	8182		34.173	1.3601	1	686990			86137	5262	59953	60051	95667	95667					-0.04041233529642341
VNEVLKWVE	9	Unmodified	_VNEVLKWVE_					0	0	0		HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.A1808Efs*13|1|0.22|ENSG00000143341|chr1:186018305-186018305|C/-|frameshift_variant;HMCN1|p.S243Kfs*17|1|0.21|ENSG00000143341|chr1:185909441-185909442|-/A|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	HMCN1|p.D4205Lfs*10|1|0.06|ENSG00000143341|chr1:186125716-186125717|-/CTCTTTTCAG|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2512817382812	2	558.308406	1114.60226	0.39831	0.00022238	-1.1166	-0.00062341	-0.7183	-0.00040103	558.3078791627414	43.091	1.3773	43.122	42.759	44.136	0.030827					111	37	4	0	0	0	0.024436	1	3966	3966		38.806	16.846	1	1612500			86138	5635	59954	60052	95668	95668					0.04954298648794975
VNFFLKNNV	9	Unmodified	_VNFFLKNNV_					0	0	0			REV__ENST00000491117.5_1_7:2770817-2802736:-|nuORF	REV__ENST00000491117.5_1_7:2770817-2802736:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2671508789062	2	547.803291	1093.59203	-1.1594	-0.0006351	1.5023	0.00082298	0.34295	0.00018787	547.8039865617577	56.142	0.80074	55.927	55.673	56.474	-0.21551					63	20	4	0	0	0	0.024523	1	6023	6023		21.96	0	1	1219600	+		86139	24499	59955	60053	95669	95669					0.04897735714234841
VNFGTWFL	8	Unmodified	_VNFGTWFL_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	492.2875061035156	2	492.252903	982.491253	-0.60086	-0.00029578	0.77313	0.00038058	0.17227	8.4799E-05	492.25308988723896	75.719	0.48155	75.719	75.551	76.032	0					24	12	3	0	0	0	0.027866	1	9329	9329		31.955	0	1	453040			86140	7311	59956	60054	95670	95670					-0.000692962686230203
VNFGTWFL	8	Unmodified	_VNFGTWFL_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.2865295410156	2	492.252903	982.491253	-0.41885	-0.00020618	0.30138	0.00014836	-0.11747	-5.7825E-05	492.25299566885525	75.916	0.4366	75.671	75.512	75.949	-0.24455					20	11	2	0	0	0	0.027866	1	9312	9312		55.504	9.532	1	465580			86141	7311	59956	60054	95671	95671					-0.000692962686230203
VNFGTWFL	8	Unmodified	_VNFGTWFL_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	492.252903	982.491253	-0.91746	-0.00045162	1.8973	0.00093394	0.97981	0.00048232	492.252941126813	76.029	0.42126	75.756	75.542	75.964	-0.27266	0.030359	0.0016116	NaN	55.504	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136460			86142	7311	59956	60054							-0.000692962686230203
VNFGTWFL	8	Unmodified	_VNFGTWFL_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	492.252903	982.491253	-0.05522	-2.7182E-05	1.166	0.00057398	1.1108	0.0005468	492.25223089936134	75.977	0.53878	75.718	75.517	76.056	-0.25866	-0.0072494	0.00089165	NaN	55.504	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104260			86143	7311	59956	60054							-0.000692962686230203
VNFRSFLLS	9	Unmodified	_VNFRSFLLS_					0	0	0		chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|73	chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|73	chr1:245764149-245816795|230|20.85|0.05|8.85|-|1|TE_info:L1PA3,L1PA3_dup734,L1,LINE,donor,+,245816795,245822560|SMYD3,None|73	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2803344726562	2	541.803291	1081.59203	-1.9547	-0.0010591	-0.055242	-2.9931E-05	-2.01	-0.001089	541.8039778407558	52.325	0.29346	52.056	51.869	52.162	-0.26903					9	7	2	0	0	0	0.024495	1	5412	5412		14.137	0	1	62440			86144	285	59957	60055	95672	95672					0.05449735714250892
VNFVVKDKL	9	Unmodified	_VNFVVKDKL_					0	0	0			REV__ENST00000338366.5_1_1:109606819-109606927:-|nuORF	REV__ENST00000338366.5_1_1:109606819-109606927:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3192138671875	2	531.321317	1060.62808	-0.68999	-0.0003666	-3.685	-0.0019579	-4.375	-0.0023245	531.319452090534	93.628	1.6585	93.634	93.265	94.924	0.0059814					106	39	5	0	0	0	0.77768	1	11802	11802		40.778	1.5253	1	3894200	+		86145	30583	59958	60056	95673	95673					0.10019192891104467
VNGILAVVF	9	Unmodified	_VNGILAVVF_					0	0	0			REV__ENSG00000137252|ENST00000370862|HCRTR2	REV__ENSG00000137252|ENST00000370862|HCRTR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.26617431640625	2	466.284203	930.553853	0.16221	7.5634E-05	2.3087	0.0010765	2.4709	0.0011522	466.28504650588985	46.249	0.33251	46.152	45.999	46.331	-0.096649					12	8	2	0	0	0	0.024517	1	4442	4442		26.796	2.5934	1	115690	+		86146	23740	59959	60057	95674	95674					0.08579849799559724
VNGIPVPPD	9	Unmodified	_VNGIPVPPD_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.3023681640625	2	454.247818	906.481082	-0.011279	-5.1233E-06	2.189	0.00099435	2.1777	0.00098923	454.2486880441918	60.398	0.37032	60.201	60.059	60.429	-0.19742					15	8	2	0	0	0	0.024292	1	6745	6745		49.442	6.9671	1	166500			86147	4485	59960	60058	95675	95675					0.024100960061332444
VNGIPVPPD	9	Unmodified	_VNGIPVPPD_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;SYNE1|p.L1268Pfs*33|1|0.04|ENSG00000131018|chr6:152444423-152444445|AAGTAACTGCTGTGCTTCAAACA/-|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	454.247818	906.481082	-0.45412	-0.00020628	2.3171	0.0010525	1.8629	0.00084623	454.2487741181	60.456	0.75602	60.203	59.904	60.66	-0.25373	0.0010041	2.4126E-05	NaN	49.442	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279910			86148	4485	59960	60058							0.024100960061332444
VNGITKKFFVE	11	Unmodified	_VNGITKKFFVE_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.75823974609375	3	427.911568	1280.71287	0.0014593	6.2443E-07	-2.8156	-0.0012048	-2.8141	-0.0012042	427.91137596892537	41.349	1.4008	41.121	40.473	41.874	-0.2278					49	36	2	0	0	0	0.02477	1	3657	3657		8.4073	4.3244	1	124470	+		86149	21996	59961	60059	95676	95676					0.08374518637015171
VNGKPKLK	8	Unmodified	_VNGKPKLK_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.76971435546875	2	442.28982	882.565087	1.5448	0.00068325	-1.2272	-0.00054276	0.31764	0.00014049	442.28918276121635	20.285	0.395	20.354	20.119	20.514	0.068901					11	7	2	0	0	0	0.027866	1	487	487		24.203	5.8783	1	29680	+		86150	27788	59962	60060	95677	95677					0.11910671893690505
VNGNQSLS	8	Unmodified	_VNGNQSLS_					0	0	0		nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG;TG|p.V2115Cfs*24|1|0.88|ENSG00000042832|chr8:133011979-133011980|-/T|frameshift_variant	nc|ENSG00000042832|P01266-2|TG	nc|ENSG00000042832|P01266-2|TG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.74273681640625	2	409.703774	817.392996	1.2393	0.00050773	-3.028	-0.0012406	-1.7887	-0.00073286	409.70263773858005	55.092	0.20322	55.092	54.979	55.182	0					8	5	2	0	0	0	0.027866	1	6067	6067		44.117	21.074	1	144470			86151	1083	59963	60061	95678	95678					-0.02300524584472896
VNGPHITE	8	Unmodified	_VNGPHITE_					0	0	0			REV__ENSG00000112893|ENST00000261483|MAN2A1	REV__ENSG00000112893|ENST00000261483|MAN2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.77685546875	2	433.721967	865.429381	-0.046388	-2.012E-05	0.24989	0.00010838	0.2035	8.8262E-05	433.7220988831013	31.566	0.67939	31.381	31.099	31.779	-0.18503					24	16	2	0	0	0	0.027866	1	2143	2143		38.806	0	1	217670	+		86152	22030	59964	60062	95679	95679					-0.008716476877566492
VNHIQDLISL	10	Unmodified	_VNHIQDLISL_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3190651-3210559:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.3251342773438	2	576.324588	1150.63462	-0.070895	-4.0859E-05	3.3448	0.0019277	3.2739	0.0018869	576.3266139869812	104.17	0.57404	104.18	103.94	104.51	0.0031357					28	13	3	0	0	0	0.40067	1	13341	13341		98.629	2.8142	1	422510			86153	9990	59965	60063	95680	95680					0.06533086051808823
VNHSSWDL	8	Unmodified	_VNHSSWDL_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.28460693359375	2	479.224874	956.435195	-0.61942	-0.00029684	-2.9303	-0.0014043	-3.5497	-0.0017011	479.22333163545113	90.448	0.83763	90.448	90.173	91.011	0					24	19	2	0	0	0	0.027866	1	11405	11405		29.15	0.89528	1	73668	+		86154	20567	59966	60064	95681	95681					-0.04476549176104072
VNIFRTHQL	9	Unmodified	_VNIFRTHQL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.2239990234375	2	564.31964	1126.62473	-0.21262	-0.00011998	-3.8362	-0.0021648	-4.0488	-0.0022848	564.3174793562226	37.282	0.50744	37.073	36.806	37.313	-0.2092					31	12	3	0	0	0	0.024374	1	2939	2939		32.812	10.853	1	338000			86155	2418	59967	60065	95682	95682					0.06647942837071241
VNIFRTHQL	9	Unmodified	_VNIFRTHQL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	564.31964	1126.62473	-0.03721	-2.0998E-05	3.0064	0.0016966	2.9692	0.0016756	564.3209627632117	37.172	0.70569	37.108	36.709	37.415	-0.063385	-0.043991	0.0044436	NaN	35.152	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89743			86156	2418	59967	60065							0.06647942837071241
VNIIDRTQ	8	Unmodified	_VNIIDRTQ_					0	0	0			REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	480.7685852050781	2	479.769448	957.524344	0.28313	0.00013584	-0.90313	-0.0004333	-0.62	-0.00029746	479.7684828413526	37.35	0.81885	37.287	36.669	37.488	-0.063385					33	21	2	0	0	0	0.027866	1	2931	2931		26.693	6.2111	1	218670	+		86157	32312	59968	60066	95683	95683					0.04388285783431911
VNIISKLVN	9	Unmodified	_VNIISKLVN_					0	0	0			REV__ENST00000378535.4_1_12:88888944-88889016:-|nuORF	REV__ENST00000378535.4_1_12:88888944-88889016:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.77032470703125	2	500.313492	998.612431	0.13193	6.6004E-05	-0.56142	-0.00028089	-0.4295	-0.00021488	500.31270880097594	65.409	0.72753	65.409	65.26	65.987	0					25	19	2	0	0	0	0.024025	1	7760	7760		71.877	2.2498	1	198380	+		86158	31404	59969	60067	95684	95684					0.11306906374034043
VNIKQKPE	8	Unmodified	_VNIKQKPE_					0	0	0		ENST00000598319.5_1_19:50023996-50024257:+|nuORF	ENST00000598319.5_1_19:50023996-50024257:+|nuORF	ENST00000598319.5_1_19:50023996-50024257:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7926940917969	2	478.282192	954.549831	-0.75139	-0.00035938	-0.58864	-0.00028153	-1.34	-0.00064091	478.2815569434672	48.884	0.72744	48.604	48.322	49.049	-0.27977					28	19	2	0	0	0	0.027866	1	4932	4932		24.203	0	1	341920			86159	17467	59970	60068	95685	95685					0.0707376030584328
VNILYQALSI	10	Unmodified	_VNILYQALSI_					0	0	0			REV__nc|ENSG00000197111|Q15366-7|PCBP2	REV__nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3306274414062	2	567.331882	1132.64921	0.34975	0.00019842	-4.0392	-0.0022916	-3.6895	-0.0020932	567.3294474759615	93.874	1.3174	93.752	93.41	94.727	-0.12215					92	30	5	0	0	0	1.1088	1	11581	11581		31.53	0.96095	1	1325500	+		86160	28265	59971	60069	95686	95686					0.0881915819995811
VNIMFRIK	8	Unmodified	_VNIMFRIK_					0	0	0			REV__ENST00000497715.1_1_2:225338964-225343150:-|nuORF	REV__ENST00000497715.1_1_2:225338964-225343150:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7894592285156	2	510.80478	1019.59501	0.15848	8.0953E-05	3.8286	0.0019557	3.9871	0.0020366	510.80710580434385	86.024	1.2521	85.886	85.577	86.829	-0.13734					50	28	2	0	0	0	0.027866	1	10386	10386		28.254	0	1	248270	+		86161	33857	59972	60070	95687	95687					0.08599287567380998
VNINGKPITT	10	Unmodified	_VNINGKPITT_					0	0	0		ENSG00000169495|ENST00000302495|HTRA4	ENSG00000169495|ENST00000302495|HTRA4	ENSG00000169495|ENST00000302495|HTRA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.729736328125	2	528.806031	1055.59751	0.29595	0.0001565	-0.23687	-0.00012526	0.059089	3.1247E-05	528.8057831381934	50.695	0.55151	50.514	50.209	50.76	-0.18071					30	14	3	0	0	0	0.03519	1	5197	5197		41.427	12.277	1	1116000			86162	7942	59973	60071	95688	95688					0.07193414506014051
VNINIHKKTN	10	Unmodified	_VNINIHKKTN_					0	0	0		ZNF804A|p.T410N|1|0.25|ENSG00000170396|chr2:184936625-184936625|C/A|missense_variant	ZNF804A|p.T410N|1|0.25|ENSG00000170396|chr2:184936625-184936625|C/A|missense_variant	ZNF804A|p.T410N|1|0.25|ENSG00000170396|chr2:184936625-184936625|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	590.8666381835938	2	590.843479	1179.67241	-1.64	-0.000969	2.9359	0.0017347	1.2959	0.00076568	590.8446818090948	102.28	0.26524	102.28	102.17	102.44	0					7	5	2	0	0	0	0.03519	1	13092	13092		45.972	16.802	1	35542			86163	38210	59974	60072	95689	95689					0.08975597037283478
VNIQAQAQSI	10	Unmodified	_VNIQAQAQSI_					0	0	0		ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3058471679688	2	536.293288	1070.57202	-1.48	-0.00079369	0.68732	0.0003686	-0.79264	-0.00042509	536.2936985217144	48.521	0.5358	48.245	48.043	48.578	-0.27598					37	14	3	0	0	0	0.03519	1	4788	4788		45.972	5.1941	1	867900			86164	8093	59975	60073	95690	95690					0.039559399836207376
VNISASFRRK	10	Unmodified	_VNISASFRRK_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3431396484375	2	589.343646	1176.67274	-1.3447	-0.00079247	-0.0816	-4.809E-05	-1.4263	-0.00084056	589.3434627424228	92.592	3.4116	92.583	91.708	95.12	-0.0082932					290	81	4	0	0	0	1.0719	4	11733	11664;11687;11733;11818		36.447	8.3653	1	13724000			86165	5846	59976	60074	95691;95692;95693;95694	95693					0.09147016757128767
VNISASFRRK	10	Unmodified	_VNISASFRRK_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.343646	1176.67274	-1.6034	-0.00094497	0.25779	0.00015193	-1.3456	-0.00079304	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.118	2	11139	11057;11139		30.318	1.3886	1	5827400			86166	5846	59976	60074	95695;95696	95696					0.09147016757128767
VNISASFRRK	10	Unmodified	_VNISASFRRK_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.34326171875	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	1.1266	1	11485	11485		29.17	0	1	15816000			86167	5846	59976	60074	95697	95697					0.09147016757128767
VNISASFRRK	10	Unmodified	_VNISASFRRK_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3427734375	2	589.343646	1176.67274	-0.33817	-0.0001993	-1.0615	-0.00062561	-1.3997	-0.0008249	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.1246	1	11211	11211		23.523	0	1	6196800			86168	5846	59976	60074	95698	95698					0.09147016757128767
VNISASFRRK	10	Unmodified	_VNISASFRRK_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3433837890625	2	589.343646	1176.67274	-0.57069	-0.00033633	-0.8775	-0.00051715	-1.4482	-0.00085348	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0719	1	11448	11448		36.447	7.2767	1	17343000			86169	5846	59976	60074	95699	95699					0.09147016757128767
VNKEKQYRYPL	11	Unmodified	_VNKEKQYRYPL_					0	0	0			REV__ENSG00000164485|ENST00000296980|IL22RA2	REV__ENSG00000164485|ENST00000296980|IL22RA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.28411865234375	3	479.933143	1436.7776	-0.22044	-0.0001058	-0.89841	-0.00043118	-1.1189	-0.00053697	480.2659527385531	75.744	0.38481	75.5	75.303	75.688	-0.24455					17	10	3	0	0	0	0.024851	1	9255	9255		9.6461	0	1	533240	+		86170	25760	59977	60075	95700	95700					0.076680934430442
VNKFNPHCL	9	Unmodified	_VNKFNPHCL_					0	0	0		ENSG00000166387|ENST00000299492|PPFIBP2;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENST00000528929.1_1_11:7670445-7672214:+|nuORF;ENST00000524495.5_1_11:7669669-7672116:+|nuORF	ENSG00000166387|ENST00000299492|PPFIBP2	ENSG00000166387|ENST00000299492|PPFIBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.30615234375	2	536.273844	1070.53313	-0.98124	-0.00052621	-1.7442	-0.00093538	-2.7255	-0.0014616	536.2725049962236	48.49	0.45029	48.337	48.125	48.575	-0.15283					21	12	2	0	0	0	0.024466	1	4922	4922		33.516	0.70317	1	182860			86171	7548	59978	60076	95701	95701					0.0006893614825003169
VNKILIVTQ	9	Unmodified	_VNKILIVTQ_					0	0	0		ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1	ENSG00000155506|ENST00000518297|LARP1	ENSG00000155506|ENST00000518297|LARP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.7496948242188	2	514.329142	1026.64373	-0.51157	-0.00026311	-0.1052	-5.4108E-05	-0.61677	-0.00031722	514.32882165801	40.829	0.49944	40.693	40.561	41.06	-0.13553					18	12	2	0	0	0	0.024541	1	3608	3608		14.137	0	1	149910			86172	6475	59979	60077	95702	95702					0.13147479408144136
VNKKAAVP	8	Unmodified	_VNKKAAVP_					0	0	0			REV__ENST00000485009.1_1_7:115863047-115889401:+|nuORF	REV__ENST00000485009.1_1_7:115863047-115889401:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.7613220214844	2	413.760895	825.507237	0.1025	4.2409E-05	-0.0075458	-3.1222E-06	0.094952	3.9287E-05	413.7607466503138	48.526	0.94002	48.344	48.02	48.96	-0.18206					59	25	4	0	0	0	0.91239	1	4818	4818		50.025	2.1089	1	3214700	+		86173	32877	59980	60078	95703	95703					0.08750409968274653
VNKKPVYDL	9	Unmodified	_VNKKPVYDL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.2967529296875	2	538.310949	1074.60735	-2.3737	-0.0012778	-2.0713	-0.001115	-4.445	-0.0023928	538.3098343387917	60.452	0.78592	60.531	60.011	60.797	0.078888					29	20	2	0	0	0	0.024405	1	6856	6856		20.947	0	1	327710			86174	6479	59981	60079	95704	95704					0.0730260251141317
VNKLKISP	8	Unmodified	_VNKLKISP_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2066650390625	2	449.789653	897.564752	-0.56924	-0.00025604	0.67616	0.00030413	0.10692	4.8093E-05	449.78980082125497	22.348	0.78633	22.162	21.906	22.692	-0.18539					32	16	3	0	0	0	0.027866	1	843	843		31.955	1.4512	1	231000			86175	9238	59982	60080	95705	95705					0.11187252173851903
VNKRSVPN	8	Unmodified	_VNKRSVPN_					0	0	0			REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	REV__nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2642822265625	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	1.0009	1	9695	9695		37.159	5.2042	1	4140300	+		86176	27082	59983	60081	95706	95706					0.05435722848858404
VNKSLLNAL	9	Unmodified	_VNKSLLNAL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	485.77166748046875	2	486.297842	970.581131	-0.11263	-5.4773E-05	-0.31685	-0.00015409	-0.42949	-0.00020886	486.2975617925047	67.966	1.1646	67.985	67.669	68.833	0.018913					87	30	5	0	0	0	0.022832	1	8001	8001		62.107	0	1	2511200			86177	6479	59984	60082	95707	95707					0.09466333339958055
VNKSLLNAL	9	Unmodified	_VNKSLLNAL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	486.297842	970.581131	0.098443	4.7872E-05	-0.69221	-0.00033662	-0.59377	-0.00028875	486.2974230764526	68.244	1.3052	67.951	67.628	68.933	-0.29267	0.011091	-7.7328E-05	NaN	62.107	89	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2775900			86178	6479	59984	60082							0.09466333339958055
VNKSVVPDL	9	Unmodified	_VNKSVVPDL_					0	0	0		nc|ENSG00000188175|A8MVW5-2|HEPACAM2;ENSG00000188175|ENST00000394468|HEPACAM2;nc|ENSG00000188175|A8MVW5-3|HEPACAM2	nc|ENSG00000188175|A8MVW5-2|HEPACAM2	nc|ENSG00000188175|A8MVW5-2|HEPACAM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.2662353515625	2	485.782025	969.549496	0.14277	6.9353E-05	-1.7428	-0.00084663	-1.6001	-0.00077728	485.78107401726055	67.841	0.3429	67.841	67.644	67.987	0					12	8	2	0	0	0	0.024025	1	8122	8122		52.937	0	1	124000			86179	9699	59985	60083	95708	95708					0.06350340586004677
VNKYSTPEAL	10	Unmodified	_VNKYSTPEAL_					0	0	0		nc|ENSG00000131061|Q9BYN7-2|ZNF341;ENSG00000131061|ENST00000375200|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	nc|ENSG00000131061|Q9BYN7-2|ZNF341	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.2792358398438	2	561.295496	1120.57644	0.26781	0.00015032	-1.3238	-0.00074301	-1.0559	-0.0005927	561.2952170323131	85.313	0.17055	85.176	85.07	85.241	-0.13753					5	3	2	0	0	0	0.03519	1	10332	10332		30.318	0	1	39987			86180	4491	59986	60084	95709	95709					0.02097404406526948
VNLEDLDLD	9	Unmodified	_VNLEDLDLD_					0	0	0			REV__ENSG00000180611|ENST00000392452|MB21D2	REV__ENSG00000180611|ENST00000392452|MB21D2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.2571411132812	2	523.256037	1044.49752	-0.98578	-0.00051582	3.6158	0.001892	2.63	0.0013761	523.2578764480814	22.826	1.3941	22.826	21.771	23.165	0					114	29	5	0	0	0	0.50848	1	829	829		58.782	0	1	2618300	+		86181	27349	59987	60085	95710	95710					-0.022948676184114447
VNLGNPTVVD	10	Unmodified	_VNLGNPTVVD_					0	0	0			REV__ENSG00000111713|ENST00000261195|GYS2	REV__ENSG00000111713|ENST00000261195|GYS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3171997070312	2	514.274564	1026.53457	-0.53014	-0.00027264	-0.37033	-0.00019045	-0.90046	-0.00046309	514.2742263627832	32.383	0.30607	32.395	32.182	32.488	0.011799					11	7	2	0	0	0	0.03519	1	2237	2237		14.865	0	1	85477	+		86182	21941	59988	60086	95711	95711					0.022368487179846852
VNLKVNLLL	9	Unmodified	_VNLKVNLLL_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2691040039062	2	513.33951	1024.66447	-0.63257	-0.00032473	0.10179	5.2252E-05	-0.53079	-0.00027247	513.3392887974195	79.687	0.45999	79.709	79.437	79.897	0.021439					17	10	2	0	0	0	0.024263	1	9809	9809		42.396	0	1	123550			86183	5370	59989	60087	95712	95712					0.15312069787796645
VNLLNDIV	8	Unmodified	_VNLLNDIV_					0	0	0		ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.2510070800781	2	450.263468	898.512382	-0.40792	-0.00018367	-4.2826	-0.0019283	-4.6906	-0.002112	450.2611323602969	33.173	0.27239	33.173	32.941	33.213	0					9	6	2	0	0	0	0.027866	1	2363	2363		31.955	0	1	44358			86184	10015	59990	60088	95713	95713					0.05906669040223278
VNLLSIPHTI	10	Unmodified	_VNLLSIPHTI_					0	0	0		ENST00000491720.5_1_2:182780297-182780357:+|nuORF	ENST00000491720.5_1_2:182780297-182780357:+|nuORF	ENST00000491720.5_1_2:182780297-182780357:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8306274414062	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.0616	1	11023	11023		37.812	0	1	5986700			86185	15467	59991	60089	95714	95714					0.10094577919812764
VNLLSSNKY	9	Unmodified	_VNLLSSNKY_					0	0	0		ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF	ENSG00000196961|ENST00000354293|AP2A1	ENSG00000196961|ENST00000354293|AP2A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2640991210938	2	519.284931	1036.55531	-0.32486	-0.0001687	-0.10986	-5.705E-05	-0.43473	-0.00022575	519.284913532277	55.982	0.74131	55.982	55.536	56.277	0					38	20	2	0	0	0	0.024292	1	6260	6260		40.778	1.5253	1	1252600			86186	9939	59992	60090	95715	95715					0.03849439097666618
VNLMTIILT	9	Unmodified	_VNLMTIILT_					0	0	0			REV__ENSG00000134115|ENST00000446702|CNTN6	REV__ENSG00000134115|ENST00000446702|CNTN6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.3061218261719	2	509.304278	1016.594	-0.42573	-0.00021683	3.8285	0.0019499	3.4027	0.001733	509.30608017634603	91.974	1.4257	91.851	91.414	92.84	-0.12241					104	33	5	0	0	0	0.82115	1	11322	11322		37.812	2.6595	1	3160300	+		86187	23422	59993	60091	95716	95716					0.08637028407838443
VNLNKMILL	9	Unmodified	_VNLNKMILL_					0	0	0			REV__nc|ENSG00000065361|P21860-4|ERBB3	REV__nc|ENSG00000065361|P21860-4|ERBB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.7822875976562	2	529.325545	1056.63654	0.34686	0.0001836	-3.9221	-0.0020761	-3.5753	-0.0018925	529.3233562699066	88.997	1.2757	89.013	88.236	89.511	0.015915					41	29	2	0	0	0	0.024405	1	11156	11156		27.882	17.017	1	53769	+		86188	20309	59994	60092	95717	95717					0.11048423536067276
VNLNKMILL	9	Unmodified	_VNLNKMILL_					0	0	0			REV__nc|ENSG00000065361|P21860-4|ERBB3	REV__nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.325545	1056.63654	-0.40551	-0.00021465	-3.172	-0.001679	-3.5775	-0.0018937	529.3237172099974	88.998	0.96731	88.998	88.555	89.523	0	-0.014336	0.00041844	NaN	27.882	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93029	+		86189	20309	59994	60092							0.11048423536067276
VNLNKMILL	9	Unmodified	_VNLNKMILL_					0	0	0			REV__nc|ENSG00000065361|P21860-4|ERBB3	REV__nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.325545	1056.63654	0.27406	0.00014507	-3.7158	-0.0019669	-3.4417	-0.0018218	529.3235488497094	89.049	1.0111	89.027	88.482	89.493	-0.021645	0.014347	-0.00015725	NaN	27.882	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85407	+		86190	20309	59994	60092							0.11048423536067276
VNLNVLREA	9	Unmodified	_VNLNVLREA_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.3171997070312	2	514.298373	1026.58219	-0.57172	-0.00029404	0.73024	0.00037556	0.15852	8.1525E-05	514.2986818638119	32.458	0.71073	32.47	32.182	32.893	0.011799					31	18	2	0	0	0	0.024436	1	2237	2237		30.504	9.5567	1	233480			86191	5362	59995	60093	95718	95718					0.0699654770885445
VNLPLSVLF	9	Unmodified	_VNLPLSVLF_					0	0	0			REV__nc|ENSG00000117501|Q5TGP6|MROH9	REV__nc|ENSG00000117501|Q5TGP6|MROH9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2747497558594	2	501.305136	1000.59572	-0.42966	-0.00021539	-3.4166	-0.0017128	-3.8463	-0.0019281	501.3032366915805	34.933	0.59819	34.721	34.479	35.077	-0.21246					27	14	3	0	0	0	0.024541	1	2586	2586		30.504	14.862	1	320850	+		86192	36599	59996	60094	95719	95719					0.09544405488088614
VNLSKRFL	8	Unmodified	_VNLSKRFL_					0	0	0			REV__nc|ENSG00000162222|Q8N5M4-2|TTC9C	REV__nc|ENSG00000162222|Q8N5M4-2|TTC9C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7583923339844	2	488.800552	975.58655	-0.68803	-0.00033631	0.71505	0.00034952	0.027024	1.3209E-05	488.8008108689523	43.341	0.54561	43.341	43.002	43.548	0					25	14	2	0	0	0	0.027866	1	4045	4045		34.173	5.023	1	146240	+		86193	36843	59997	60095	95720	95720					0.0977805692241418
VNLSLIPVM	9	Oxidation (M)	_VNLSLIPVM(Oxidation (M))_		VNLSLIPVM(1)		VNLSLIPVM(41)	0	0	1		ENSG00000189339|ENST00000617444|SLC35E2B;ENST00000481276.1_1_1:1602946-1608282:-|nuORF	ENSG00000189339|ENST00000617444|SLC35E2B	ENSG00000189339|ENST00000617444|SLC35E2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2908020019531	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.78069	1	10528	10528		40.573	6.4001	1	10571000			86194	9805	59998	60096	95721	95721		404			0.06244455373746405
VNLTKFELP	9	Unmodified	_VNLTKFELP_					0	0	0			REV__ENSG00000113532|ENST00000231461|ST8SIA4	REV__ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3231201171875	2	530.8055	1059.59645	-0.029342	-1.5575E-05	-1.4123	-0.00074963	-1.4416	-0.00076521	531.3063326589669	94.805	0.42838	94.683	94.299	94.727	-0.12215					13	9	2	0	0	0	0.024541	1	11694	11694		20.947	0	1	42928	+		86195	22071	59999	60097	95722	95722					0.0690320013713972
VNLTRLRSL	9	Unmodified	_VNLTRLRSL_					0	0	0			REV__MFHAS1|p.D187N|1|0.47|ENSG00000147324|chr8:8892500-8892500|C/T|missense_variant	REV__MFHAS1|p.D187N|1|0.47|ENSG00000147324|chr8:8892500-8892500|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.3058471679688	2	536.33529	1070.65603	-1.099	-0.00058941	-1.8935	-0.0010155	-2.9925	-0.001605	536.3347167989466	48.044	0.25805	48.111	48.007	48.265	0.066795					9	6	2	0	0	0	0.024477	1	4828	4828		27.882	0	1	230960	+		86196	36375	60000	60098	95723	95723					0.12352515871180003
VNLVLKPKV	9	Unmodified	_VNLVLKPKV_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.3056335449219	2	505.342052	1008.66955	0.42224	0.00021337	-1.147	-0.00057961	-0.72473	-0.00036624	505.34130852124093	69.581	0.74579	69.288	69.09	69.836	-0.29291					34	18	3	0	0	0	0.024205	1	8387	8387		35.618	5.1146	1	452510	+		86197	25736	60001	60099	95724	95724					0.16556373650405476
VNLVSAPLP	9	Unmodified	_VNLVSAPLP_					0	0	0		ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.74456787109375	2	455.273835	908.533118	0.64263	0.00029257	-0.75368	-0.00034313	-0.11105	-5.0559E-05	455.27339103266974	97.429	0.75107	97.438	97.104	97.855	0.0089111					28	16	2	0	0	0	0.024021	1	12391	12391		32.812	11.865	1	170430			86198	14924	60002	60100	95725	95725					0.07519259419893842
VNLVSAPLPP	10	Unmodified	_VNLVSAPLPP_					0	0	0		ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.8005676269531	2	503.800217	1005.58588	-0.88638	-0.00044656	0.896	0.00045141	0.0096175	4.8453E-06	503.8005509346189	58.337	0.98093	58.152	57.814	58.795	-0.1853					66	26	3	0	0	0	0.45367	1	6565	6565		93.195	1.0048	1	6742800			86199	14924	60003	60101	95726	95726					0.08331217482702868
VNLVSAPLPP	10	Unmodified	_VNLVSAPLPP_					0	0	0		ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.8003234863281	2	503.800217	1005.58588	-0.36472	-0.00018375	0.50026	0.00025203	0.13554	6.8287E-05	503.80030953178107	57.933	0.98797	58.024	57.683	58.671	0.091217					70	26	4	0	0	0	0.34101	2	6472	6449;6472		104.75	3.535	1	6780700			86200	14924	60003	60101	95727;95728	95728					0.08331217482702868
VNLVSAPLPP	10	Unmodified	_VNLVSAPLPP_					0	0	0		ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7996826171875	2	503.800217	1005.58588	-0.13951	-7.0286E-05	0.56388	0.00028408	0.42437	0.0002138	503.80035086169596	58.261	1.1021	58.071	57.599	58.701	-0.19018					47	27	2	0	0	0	0.64538	1	6391	6391		71.877	0.49956	1	3241400			86201	14924	60003	60101	95729	95729					0.08331217482702868
VNLVSAPLPP	10	Unmodified	_VNLVSAPLPP_					0	0	0		ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	ENST00000470053.1_1_2:106717459-106717567:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7991943359375	2	503.800217	1005.58588	0.11842	5.9659E-05	0.30232	0.00015231	0.42074	0.00021197	503.8001643063495	58.309	0.96804	58.075	57.854	58.822	-0.23405					59	23	4	0	0	0	0.37169	3	6380	6380;6389;6401		101.6	18.934	1	3807800			86202	14924	60003	60101	95730;95731;95732	95730					0.08331217482702868
VNLYKGAVL	9	Unmodified	_VNLYKGAVL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7947082519531	2	488.794935	975.575317	0.14444	7.0602E-05	-0.25553	-0.0001249	-0.11109	-5.4299E-05	488.794670399138	72.607	0.96754	72.617	72.25	73.217	0.0097733					64	23	4	0	0	0	0.83071	1	8753	8753		37.159	5.2042	1	2650200			86203	5257	60004	60102	95733	95733					0.08655234828290759
VNNEWSKP	8	Unmodified	_VNNEWSKP_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2586975097656	2	487.240524	972.466495	-0.26672	-0.00012996	-0.59018	-0.00028756	-0.8569	-0.00041752	487.23997867248414	45.075	0.46078	44.864	44.595	45.056	-0.21109					25	11	3	0	0	0	0.027866	1	4237	4237		42.396	0	1	275130	+		86204	21880	60005	60103	95734	95734					-0.020839761420006653
VNNNIKLK	8	Unmodified	_VNNNIKLK_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.77703857421875	2	471.790184	941.565815	-0.5494	-0.0002592	0.75897	0.00035807	0.20957	9.8873E-05	471.79015960489204	29.138	0.67973	28.988	28.657	29.337	-0.14952					24	15	3	0	0	0	0.027866	1	1717	1717		45.952	0	1	340490	+		86205	27626	60006	60104	95735	95735					0.09269466542741611
VNNTLVDDY	9	Unmodified	_VNNTLVDDY_					0	0	0		nc|ENSG00000115598|Q9HB29-2|IL1RL2;ENSG00000115598|ENST00000264257|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.7465209960938	2	526.748379	1051.4822	-0.51999	-0.00027391	-3.4866	-0.0018366	-4.0066	-0.0021105	526.7467088338344	31.429	1.2156	31.44	31.084	32.299	0.011797					94	29	6	0	0	0	0.32811	1	2096	2096		71.877	0.58177	1	9216400			86206	3470	60007	60105	95736	95736					-0.041477344156191975
VNPLLGNI	8	Unmodified	_VNPLLGNI_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	420.24066162109375	2	420.252903	838.491253	-0.95095	-0.00039964	2.22	0.00093294	1.269	0.00053331	420.25408486563236	37.354	0.34914	37.134	36.962	37.311	-0.2195					12	8	2	0	0	0	0.027866	1	2992	2992		12.959	0	1	230790	+		86207	25610	60008	60106	95737	95737					0.06554703731376321
VNPNTLKE	8	Unmodified	_VNPNTLKE_					0	0	0		ENST00000491694.1_1_3:111658417-111664240:+|nuORF;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2	ENST00000491694.1_1_3:111658417-111664240:+|nuORF	ENST00000491694.1_1_3:111658417-111664240:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.7509765625	2	457.750724	913.486896	-0.83299	-0.0003813	0.88098	0.00040327	0.047989	2.1967E-05	457.7510139270922	29.814	1.2658	29.641	29.365	30.631	-0.17258					73	29	5	0	0	0	0.87148	1	1871	1871		53.351	0.41475	1	1777000			86208	5773	60009	60107	95738	95738					0.026691945178072274
VNPSVNPSI	9	Unmodified	_VNPSVNPSI_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	463.7508239746094	2	463.750724	925.486896	-0.25313	-0.00011739	0.21696	0.00010061	-0.036173	-1.6775E-05	463.75081717597857	49.834	1.101	49.834	49.508	50.609	0					92	31	5	0	0	0	0.40693	1	5159	5159		65.465	0.30814	1	11037000			86209	1775	60010	60108	95739	95739					0.021171945178025453
VNPVLRFPS	9	Unmodified	_VNPVLRFPS_					0	0	0			REV__SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	REV__SH3RF2|p.V421Afs*72|1|0.04|ENSG00000156463|chr5:146049181-146049182|-/GC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.3165283203125	2	514.798009	1027.58147	-0.38783	-0.00019966	1.5183	0.0007816	1.1304	0.00058194	514.7990009267827	32.824	0.40286	32.659	32.476	32.879	-0.16565					13	9	2	0	0	0	0.024506	1	2254	2254		6.3127	0	1	126330	+		86210	25077	60011	60109	95740	95740					0.06877753059802671
VNPVLSSRLHV	11	Unmodified	_VNPVLSSRLHV_					0	0	0		nc|ENSG00000168907|Q68DD2-3|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	406.75311279296875	3	407.575178	1219.70371	-0.3351	-0.00013658	0.29692	0.00012102	-0.038183	-1.5562E-05	407.5752202792757	44.975	0.82453	44.826	44.455	45.279	-0.1488					80	23	4	0	0	0	0.024779	1	4373	4373		21.78	0	1	1454000			86211	7880	60012	60110	95741	95741					0.10264170071354783
VNPWRNWEMS	10	Unmodified	_VNPWRNWEMS_					0	0	0			REV__ENSG00000163833|ENST00000338040|FBXO40	REV__ENSG00000163833|ENST00000338040|FBXO40	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	440.73028564453125	3	440.204757	1317.59244	-0.0097594	-4.2961E-06	2.4732	0.0010887	2.4634	0.0010844	440.54022207850966	34.434	0.49919	34.429	34.152	34.651	-0.0045624					20	12	3	0	0	0	0.03519	1	2555	2555		14.086	0	1	175380	+		86212	25644	60013	60111	95742	95742					-0.053652126282258905
VNQIQLSY	8	Unmodified	_VNQIQLSY_					0	0	0			REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7601013183594	2	482.758549	963.502546	0.19266	9.3007E-05	4.1618	0.0020092	4.3545	0.0021022	482.760366535382	77.612	1.8258	77.612	77.167	78.993	0					101	43	3	0	0	0	0.68535	1	9618	9618		68.485	10.673	1	1986500	+		86213	26652	60014	60112	95743	95743					0.019334810348595965
VNQLFNKRE	9	Unmodified	_VNQLFNKRE_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.3154296875	2	574.314554	1146.61456	-1.2076	-0.00069355	4.4826	0.0025744	3.275	0.0018809	574.3169222215326	56.773	0.76707	56.773	56.46	57.227	0					50	21	4	0	0	0	0.53979	1	6347	6347		56.721	5.5284	1	4443600	+		86214	28646	60015	60113	95744	95744					0.04711335111824155
VNQLFNKRE	9	Unmodified	_VNQLFNKRE_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	574.314554	1146.61456	-1.2076	-0.00069355	4.4826	0.0025744	3.275	0.0018809	574.3169222215326	56.773	0.76707	56.773	56.46	57.227	0	0.028559	0.00068703	NaN	56.721	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4443600	+		86215	28646	60015	60113							0.04711335111824155
VNQMQTPSL	9	Unmodified	_VNQMQTPSL_					0	0	0		ENST00000483728.5_1_2:231265586-231265823:+|nuORF	ENST00000483728.5_1_2:231265586-231265823:+|nuORF	ENST00000483728.5_1_2:231265586-231265823:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2994384765625	2	509.255317	1016.49608	-0.042564	-2.1676E-05	-3.9056	-0.0019889	-3.9481	-0.0020106	509.2540836992037	42.643	0.7505	42.669	42.255	43.005	0.026012					48	20	3	0	0	0	0.024427	1	3876	3876		19.997	0	1	626770			86216	15289	60016	60114	95745	95745					-0.011507801881634805
VNQRALSH	8	Unmodified	_VNQRALSH_					0	0	0			REV__ENST00000430211.1_7:75039430-75040029:+|nuORF	REV__ENST00000430211.1_7:75039430-75040029:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.3000183105469	2	462.754133	923.493713	0.006649	3.0768E-06	-3.663	-0.0016951	-3.6563	-0.001692	462.75252370007297	86.343	1.1859	86.298	85.368	86.554	-0.045105					37	27	2	0	0	0	0.027866	1	10831	10831		6.3127	0	1	125210	+		86217	32350	60017	60115	95746	95746					0.028905521890351338
VNQRDELVR	9	Unmodified	_VNQRDELVR_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1;ENST00000533364.1_1_11:65359049-65359770:+|nuORF	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.813232421875	2	564.809636	1127.60472	3.9116	0.0022093	2.4665	0.0013931	6.3782	0.0036025	564.8109499272249	17.844	0.84043	17.594	17.276	18.116	-0.25049					21	16	2	0	0	0	0.82115	1	214	214		37.812	1.3648	1	170160			86218	8374	60018	60116	95747	95747					0.04602147106470511
VNRALSLRKGV	11	Unmodified	_VNRALSLRKGV_					0	0	0			REV__ENSG00000213903|ENST00000345363|LTB4R	REV__ENSG00000213903|ENST00000345363|LTB4R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.9228515625	3	404.922689	1211.74624	-0.22601	-9.1516E-05	-0.11784	-4.7715E-05	-0.34385	-0.00013923	404.92283633226685	26.49	3.6476	26.254	25.843	29.49	-0.23603					235	89	5	0	0	0	1.0648	1	1446	1446		21.032	0.19508	1	42722000	+		86219	28755	60019	60117	95748	95748					0.14883565199579607
VNRAQPIPS	9	Unmodified	_VNRAQPIPS_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	nc|ENSG00000111837|P20794-3|MAK	nc|ENSG00000111837|P20794-3|MAK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2767639160156	2	491.277441	980.540328	-0.85017	-0.00041767	0.20438	0.00010041	-0.64579	-0.00031726	491.2773623778141	40.423	1.3428	40.446	39.84	41.182	0.023003					80	37	4	0	0	0	0.35646	1	3497	3497		68.787	1.2932	1	6116300			86220	3149	60020	60118	95749	95749					0.049279920203161964
VNRFMPSTI	9	Unmodified	_VNRFMPSTI_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0|NRXN3	REV__nc|ENSG00000021645|Q9Y4C0|NRXN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3067626953125	2	532.781502	1063.54845	-0.55996	-0.00029834	1.4591	0.0007774	0.89918	0.00047907	532.782151298909	63.529	1.0588	63.336	62.822	63.881	-0.19243					57	26	3	0	0	0	0.024261	1	7188	7188		45.972	0	1	828190	+		86221	19996	60021	60119	95750	95750					0.019218029454577845
VNRIVHWAI	9	Unmodified	_VNRIVHWAI_					0	0	0			REV__ENSG00000080618|ENST00000181383|CPB2	REV__ENSG00000080618|ENST00000181383|CPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	553.78271484375	2	554.324725	1106.6349	-0.66716	-0.00036982	-2.3666	-0.0013118	-3.0337	-0.0016817	554.3237348654037	83.097	0.63992	83.124	82.702	83.342	0.026558					22	14	2	0	0	0	0.024466	1	10250	10250		42.474	0	1	53467	+		86222	20659	60022	60120	95751	95751					0.0858455056229559
VNRIVPVV	8	Unmodified	_VNRIVPVV_					0	0	0			REV__nc|ENSG00000119689|P36957-2|DLST	REV__nc|ENSG00000119689|P36957-2|DLST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.2901306152344	2	448.28982	894.565087	-0.19046	-8.5379E-05	0.18931	8.4864E-05	-0.0011488	-5.1498E-07	448.28977296816504	53.003	0.98671	53.003	52.595	53.582	0					58	26	3	0	0	0	0.88442	1	5705	5705		52.299	2.2746	1	2627800	+		86223	22478	60023	60121	95752	95752					0.1135867189370856
VNRKSIRI	8	Unmodified	_VNRKSIRI_					0	0	0			REV__ENST00000317357.9_1_6:107956536-107979693:+|nuORF	REV__ENST00000317357.9_1_6:107956536-107979693:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.30596923828125	2	493.3169	984.619247	0.054628	2.6949E-05	3.3886	0.0016716	3.4432	0.0016986	493.3182878167695	69.29	0.21376	69.29	69.094	69.308	0					11	5	3	0	0	0	0.027866	1	8338	8338		29.15	0	1	432660	+		86224	30293	60024	60122	95753	95753					0.12632264045259944
VNRLIYGW	8	Unmodified	_VNRLIYGW_					0	0	0			REV__ENST00000506503.1_1_4:39219821-39219944:+|nuORF	REV__ENST00000506503.1_1_4:39219821-39219944:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.8085021972656	2	510.784902	1019.55525	0.11525	5.8868E-05	2.4349	0.0012437	2.5501	0.0013026	511.28702387187377	68.456	0.21917	68.475	68.353	68.573	0.018913					7	5	2	0	0	0	0.027866	1	8127	8127		26.796	0	1	61581	+		86225	34029	60025	60123	95754	95754					0.04625483888321469
VNRRLVVE	8	Unmodified	_VNRRLVVE_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7;nc|ENSG00000186862|Q9H5P4-2|PDZD7;nc|ENSG00000186862|Q9H5P4-1|PDZD7;ENST00000474125.6_1_10:102781964-102783431:-|nuORF	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.8011169433594	2	492.801083	983.587613	-1.1104	-0.0005472	0.25036	0.00012338	-0.86003	-0.00042383	492.80119252309186	36.024	1.4739	35.981	35.488	36.962	-0.042454					96	39	5	0	0	0	0.95679	1	2842	2842		44.117	1.7207	1	18457000			86226	9581	60026	60124	95755	95755					0.09516271291317935
VNRRRRLL	8	Unmodified	_VNRRRRLL_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.2803344726562	2	541.854516	1081.69448	-2.2444	-0.0012161	4.339	0.0023511	2.0946	0.001135	541.8567225555472	52.214	0.39986	51.945	51.725	52.125	-0.26903					13	10	2	0	0	0	0.027866	1	5412	5412		8.2313	0	1	169390	+		86227	23141	60027	60125	95756	95756					0.15689866296361288
VNRTLGRNVPL	11	Unmodified	_VNRTLGRNVPL_					0	0	0		ENSG00000111752|ENST00000544916|PHC1;ENST00000433847.2_1_12:9067399-9086462:+|nuORF	ENSG00000111752|ENST00000544916|PHC1	ENSG00000111752|ENST00000544916|PHC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8692016601562	2	619.870028	1237.7255	-0.98359	-0.0006097	-0.34317	-0.00021272	-1.3268	-0.00082242	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	0.99553	1	11412	11412		37.812	0	1	1625000			86228	3146	60028	60126	95757	95757					0.11614974819940471
VNSIVWVRQL	10	Unmodified	_VNSIVWVRQL_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	405.23895263671875	3	405.239907	1212.69789	0.80208	0.00032504	-3.8571	-0.0015631	-3.055	-0.001238	405.23838878540363	27	1.0374	27.081	26.758	27.795	0.081293					99	27	5	0	0	0	0.93809	1	1384	1384		51.528	3.5682	1	14939000			86229	9617	60029	60127	95758	95758					0.10005071559703538
VNSKYISL	8	Unmodified	_VNSKYISL_					0	0	0			REV__ENST00000295190.8_1_2:230910810-230911044:-|nuORF	REV__ENST00000295190.8_1_2:230910810-230911044:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.2876892089844	2	462.263468	922.512382	0.95561	0.00044174	-0.31576	-0.00014596	0.63985	0.00029578	462.26309705233285	59.246	0.95064	59.246	58.895	59.846	0					51	25	3	0	0	0	0.027866	1	6776	6776		49.442	0	1	621620	+		86230	29974	60030	60128	95759	95759					0.04802669040236651
VNTDQEHIS	9	Unmodified	_VNTDQEHIS_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.2503051757812	2	521.743628	1041.4727	0.61137	0.00031898	0.75518	0.00039401	1.3666	0.00071299	521.7434942820463	72.286	0.5386	72.021	71.718	72.256	-0.26479					18	12	2	0	0	0	0.02435	1	8455	8455		42.396	0	1	206790	+		86231	37044	60031	60129	95760	95760					-0.04637502701143603
VNTHRLLL	8	Unmodified	_VNTHRLLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2690124511719	2	483.298176	964.581799	-0.40093	-0.00019377	1.4556	0.00070349	1.0547	0.00050972	483.2986809954725	83.159	0.21526	83.159	83.008	83.223	0					7	4	2	0	0	0	0.027866	1	10388	10388		31.955	7.7521	1	34334			86232	9286	60032	60130	95761	95761					0.09809172779660003
VNTPTQPE	8	Unmodified	_VNTPTQPE_					0	0	0			REV__ENSG00000108559|ENST00000573584|NUP88	REV__ENSG00000108559|ENST00000573584|NUP88	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2922668457031	2	443.219257	884.423961	0.13507	5.9865E-05	2.959	0.0013115	3.094	0.0013713	443.22088818478113	36.779	0.16026	36.716	36.628	36.789	-0.063385					5	3	2	0	0	0	0.027866	1	2935	2935		37.159	0	1	27170	+		86233	21746	60033	60131	95762	95762					-0.02287371270233507
VNTYQVPW	8	Unmodified	_VNTYQVPW_					0	0	0		ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.75067138671875	2	503.753267	1005.49198	-0.42818	-0.0002157	-4.0783	-0.0020544	-4.5064	-0.0022701	503.75117260548325	33.779	1.5079	33.775	33.143	34.651	-0.0045624					107	39	4	0	0	0	0.42327	1	2432	2432		94.006	17.232	1	4863200			86234	13843	60034	60132	95763	95763					-0.01054501619569237
VNTYQVPW	8	Unmodified	_VNTYQVPW_					0	0	0		ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7509765625	2	503.753267	1005.49198	-0.40463	-0.00020383	-3.8026	-0.0019156	-4.2072	-0.0021194	503.75132876540437	33.907	1.2345	33.705	33.054	34.288	-0.20204					92	31	4	0	0	0	0.56592	1	2418	2418		79.451	4.4077	1	10064000			86235	13843	60034	60132	95764	95764					-0.01054501619569237
VNTYQVPW	8	Unmodified	_VNTYQVPW_					0	0	0		ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.7514953613281	2	503.753267	1005.49198	-1.4696	-0.00074032	-2.8249	-0.0014231	-4.2945	-0.0021634	503.7518470905498	33.896	1.1077	33.72	33.185	34.293	-0.17557					87	27	4	0	0	0	0.35998	2	2445	2445;2484		102.77	16.163	1	9550700			86236	13843	60034	60132	95765;95766	95765					-0.01054501619569237
VNVAHDVL	8	Unmodified	_VNVAHDVL_					0	0	0		ENSG00000155254|ENST00000285605|MARVELD1	ENSG00000155254|ENST00000285605|MARVELD1	ENSG00000155254|ENST00000285605|MARVELD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	433.7762145996094	2	433.74016	865.465767	-0.042222	-1.8314E-05	0.68684	0.00029791	0.64462	0.0002796	433.74034721042614	31.677	0.5147	31.524	31.269	31.783	-0.15231					20	12	2	0	0	0	0.027866	1	2123	2123		53.351	0	1	158130			86237	6461	60035	60133	95767	95767					0.027652292089555885
VNVAITMCVL	10	Unmodified	_VNVAITMCVL_					0	0	0		nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L;ENST00000581423.1_1_19:5687386-5687953:+|nuORF;nc|ENSG00000167733|Q7Z5J1-4|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-5|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-3|HSD11B1L;ENSG00000167733|ENST00000339423|HSD11B1L;nc|ENSG00000167733|Q7Z5J1|HSD11B1L	nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L	nc|ENSG00000167733|Q7Z5J1-7|HSD11B1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2672119140625	2	531.787938	1061.56132	0.051981	2.7643E-05	2.4233	0.0012887	2.4752	0.0013163	532.2916603927885	71.903	0.26057	71.615	71.427	71.688	-0.28858					9	6	2	0	0	0	0.03519	1	8687	8687		67.494	23.116	1	86962			86238	7731	60036	60134	95768	95768					0.03300498013300057
VNVATKSKKK	10	Unmodified	_VNVATKSKKK_					0	0	0			REV__ENSG00000068784|ENST00000263736|SRBD1	REV__ENSG00000068784|ENST00000263736|SRBD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.7593994140625	2	551.850773	1101.68699	-0.29829	-0.00016461	3.4823	0.0019217	3.184	0.0017571	551.8526442870682	51.915	0.36521	51.797	51.646	52.011	-0.11876					15	9	2	0	0	0	0.03519	1	5380	5380		11.636	0	1	149190	+		86239	20387	60037	60135	95769	95769					0.14021669185399332
VNVAYTTK	8	Unmodified	_VNVAYTTK_					0	0	0			REV__ZNF432|p.N204Tfs*45|1|0.43|ENSG00000256087|chr19:52035068-52035068|T/-|frameshift_variant	REV__ZNF432|p.N204Tfs*45|1|0.43|ENSG00000256087|chr19:52035068-52035068|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.2901306152344	2	448.247818	894.481082	-0.22113	-9.9123E-05	0.54458	0.00024411	0.32345	0.00014499	448.2480167953813	52.874	0.41373	52.874	52.673	53.086	0					18	10	2	0	0	0	0.027866	1	5705	5705		32.812	0	1	168200	+		86240	37805	60038	60136	95770	95770					0.029620960061265578
VNVKYTEI	8	Unmodified	_VNVKYTEI_					0	0	0			REV__ENSG00000189221|ENST00000338702|MAOA	REV__ENSG00000189221|ENST00000338702|MAOA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2688903808594	2	483.26875	964.522947	0.73448	0.00035495	-0.43749	-0.00021142	0.29699	0.00014353	483.26860464900534	83.199	1.5415	83.108	82.787	84.328	-0.090454					96	35	5	0	0	0	0.6248	1	10377	10377		73.975	0	1	10385000	+		86241	28109	60039	60137	95771	95771					0.039266516946554475
VNVVDRLF	8	Unmodified	_VNVVDRLF_					0	0	0			REV__nc|ENSG00000117143|Q16222-2|UAP1	REV__nc|ENSG00000117143|Q16222-2|UAP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.2451171875	2	481.276909	960.539266	-0.63012	-0.00030326	-0.62542	-0.000301	-1.2555	-0.00060426	481.27705606283604	61.008	0.19059	60.754	60.584	60.774	-0.25373					6	4	2	0	0	0	0.027866	1	6782	6782		35.201	5.3592	1	68893	+		86242	22328	60040	60138	95772	95772					0.057417776514284924
VNVWNAETK	9	Unmodified	_VNVWNAETK_					0	0	0			REV__nc|ENSG00000164136|P40933-2|IL15	REV__nc|ENSG00000164136|P40933-2|IL15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.7462158203125	2	530.774731	1059.53491	-0.2285	-0.00012128	-0.052833	-2.8042E-05	-0.28133	-0.00014932	530.7745271325932	32.505	0.53845	32.268	32.042	32.581	-0.23666					19	12	2	0	0	0	0.024405	1	2238	2238		14.865	1.9057	1	131940	+		86243	25704	60041	60139	95773	95773					0.007522684378500344
VNVWNAETK	9	Unmodified	_VNVWNAETK_					0	0	0			REV__nc|ENSG00000164136|P40933-2|IL15	REV__nc|ENSG00000164136|P40933-2|IL15	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.774731	1059.53491	-1.1346	-0.00060221	-2.9746	-0.0015788	-4.1091	-0.002181	530.7729693705733	32.516	0.86986	32.516	32.186	33.056	0	0.17137	-0.00043534	NaN	14.865	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405570	+		86244	25704	60041	60139							0.007522684378500344
VNVWNAETK	9	Unmodified	_VNVWNAETK_					0	0	0			REV__nc|ENSG00000164136|P40933-2|IL15	REV__nc|ENSG00000164136|P40933-2|IL15	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.774731	1059.53491	-0.84052	-0.00044613	-3.6095	-0.0019158	-4.45	-0.002362	530.7726464648865	32.378	0.82798	32.39	32.144	32.972	0.011799	0.045816	-0.0011094	NaN	14.865	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379380	+		86245	25704	60041	60139							0.007522684378500344
VNVWNAETK	9	Unmodified	_VNVWNAETK_					0	0	0			REV__nc|ENSG00000164136|P40933-2|IL15	REV__nc|ENSG00000164136|P40933-2|IL15	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.774731	1059.53491	-0.53782	-0.00028546	-3.5912	-0.0019061	-4.129	-0.0021916	530.7726666702174	32.094	0.88528	32.157	31.921	32.806	0.062885	-0.1871	-0.00109	NaN	14.865	35	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346710	+		86246	25704	60041	60139							0.007522684378500344
VNWEILTP	8	Unmodified	_VNWEILTP_					0	0	0		ENSG00000237700|ENST00000437300|PRAMEF33;ENSG00000187545|ENST00000235347|PRAMEF10	ENSG00000237700|ENST00000437300|PRAMEF33	ENSG00000237700|ENST00000437300|PRAMEF33	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2819519042969	2	486.263468	970.512382	0.28699	0.00013955	2.8791	0.0014	3.166	0.0015395	486.2650323488991	89.59	0.71529	89.568	89.199	89.914	-0.021645					35	16	3	0	0	0	0.027866	1	11235	11235		45.952	11.779	1	195390			86247	9634	60042	60140	95774	95774					0.025946690402406603
VNWIESSSW	9	Unmodified	_VNWIESSSW_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF;ENST00000400943.3_1_1:240136137-240136869:+|nuORF	ENSG00000112972|ENST00000325110|HMGCS1;ENST00000400943.3_1_1:240136137-240136869:+|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	554.7796020507812	2	554.258914	1106.50327	-0.53582	-0.00029699	-2.1805	-0.0012086	-2.7164	-0.0015056	554.2567804245502	62.475	0.19295	62.217	62.096	62.289	-0.25824					6	4	2	0	0	0	0.024539	1	7020	7020		20.947	0	1	46963			86248	3253;13663	60043	60141	95775	95775					-0.04571724316087966
VNWKKKKS	8	Unmodified	_VNWKKKKS_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;ENST00000525284.5_1_15:101565016-101602660:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.2796630859375	2	509.313826	1016.6131	-0.27353	-0.00013931	1.1336	0.00057738	0.86011	0.00043806	509.31364586003906	35.44	0.19312	35.225	35.062	35.255	-0.21555					6	4	2	0	0	0	0.027866	1	2665	2665		23.042	3.6825	1	23441			86249	6392	60044	60142	95776	95776					0.10545745813749363
VNWKRIKR	8	Unmodified	_VNWKRIKR_					0	0	0		nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.30859375	2	550.345992	1098.67743	-1.8439	-0.0010148	0.54621	0.00030061	-1.2977	-0.00071417	550.3461633696626	49.337	0.56215	49.411	49.169	49.731	0.074192					41	14	4	0	0	0	0.027866	1	5072	5072		33.516	8.0654	1	1579300			86250	4988	60045	60143	95777	95777					0.1320394569054315
VNWKRIKR	8	Unmodified	_VNWKRIKR_					0	0	0		nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.345992	1098.67743	-0.47724	-0.00026265	-0.81774	-0.00045004	-1.295	-0.00071269	550.3454203758945	49.651	0.52498	49.5	49.256	49.781	-0.1512	0.0465	-0.00021184	NaN	33.516	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1740100			86251	4988	60045	60143							0.1320394569054315
VNYCLVTDLI	10	Unmodified	_VNYCLVTDLI_					0	0	0		nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.8429565429688	2	576.8021	1151.58965	-0.05843	-3.3702E-05	-2.2908	-0.0013213	-2.3492	-0.001355	576.8002233895542	89.905	0.426	89.767	89.532	89.958	-0.13824					24	9	3	0	0	0	0.03519	1	10972	10972		20.947	0	1	170320			86252	5893	60046	60144	95778	95778					0.019915191942573074
VNYESFKV	8	Unmodified	_VNYESFKV_					0	0	0		SEC23IP|p.E766K|1|0.06|ENSG00000107651|chr10:119926210-119926210|G/A|missense_variant	SEC23IP|p.E766K|1|0.06|ENSG00000107651|chr10:119926210-119926210|G/A|missense_variant	SEC23IP|p.E766K|1|0.06|ENSG00000107651|chr10:119926210-119926210|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.25390625	2	493.2531	984.491647	0.88028	0.0004342	-0.67154	-0.00033124	0.20874	0.00010296	493.2526019417458	55.628	0.82064	55.628	55.319	56.139	0					57	22	4	0	0	0	0.62178	1	6167	6167		74.255	2.9593	1	2530600			86253	37866	60047	60145	95779	95779					-0.0012192133942789951
VNYNIIRSV	9	Unmodified	_VNYNIIRSV_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7997436523438	2	539.306198	1076.59784	-1.0042	-0.00054156	3.8832	0.0020942	2.879	0.0015527	539.3084566054201	68.624	0.52323	68.362	68.103	68.626	-0.26166					19	12	2	0	0	0	0.024438	1	7900	7900		36.447	15.965	1	952590	+		86254	25826	60048	60146	95780	95780					0.06260834225895451
VNYYLHQP	8	Unmodified	_VNYYLHQP_					0	0	0		nc|ENSG00000056291|Q9Y5X5|NPFFR2;NPFFR2|p.T494Pfs*15|1|0.33|ENSG00000056291|chr4:72147721-72147721|A/-|frameshift_variant;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2	nc|ENSG00000056291|Q9Y5X5|NPFFR2	nc|ENSG00000056291|Q9Y5X5|NPFFR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.2896728515625	2	517.258717	1032.50288	-0.54582	-0.00028233	-0.70468	-0.0003645	-1.2505	-0.00064684	517.2585577412642	33.419	1.0434	33.425	33.08	34.124	0.0066261					45	27	2	0	0	0	0.027866	1	2479	2479		33.516	19.378	1	98702			86255	18050	60049	60147	95781	95781					-0.012070992453118379
VPAAFHLL	8	Unmodified	_VPAAFHLL_					0	0	0		ENST00000337288.9_2_2:96850901-96851006:-|nuORF	ENST00000337288.9_2_2:96850901-96851006:-|nuORF	ENST00000337288.9_2_2:96850901-96851006:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7799377441406	2	434.257988	866.501424	0.18904	8.2094E-05	-4.2988	-0.0018668	-4.1097	-0.0017847	434.25590770494915	40.208	1.2731	40.096	39.754	41.027	-0.11222					50	34	2	0	0	0	0.027866	1	3513	3513		33.493	2.9893	1	209500			86256	12418	60050	60148	95782	95782					0.06283311456604679
VPAAFRLPT	9	Unmodified	_VPAAFRLPT_					0	0	0		ENST00000472403.5_2_17:42766475-42767202:+|nuORF	ENST00000472403.5_2_17:42766475-42767202:+|nuORF	ENST00000472403.5_2_17:42766475-42767202:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.8124694824219	2	486.287277	970.560001	-0.63683	-0.00030968	-3.4168	-0.0016616	-4.0537	-0.0019712	486.28550530580964	89.065	1.1769	88.9	88.552	89.729	-0.16445					50	27	2	0	0	0	0.024436	1	10912	10912		38.806	15.764	1	250960			86257	14988	60051	60149	95783	95783					0.0735436803107632
VPADTIDPE	9	Unmodified	_VPADTIDPE_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7605895996094	2	478.732197	955.449842	0.49168	0.00023538	-3.9327	-0.0018827	-3.441	-0.0016473	478.7303672410494	33.385	0.79018	33.442	33.141	33.931	0.056572					32	20	2	0	0	0	0.024183	1	2410	2410		40.573	0	1	276740	+		86258	22391	60052	60150	95784	95784					-0.02966521818621004
VPAELLVPN	9	Unmodified	_VPAELLVPN_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2488098144531	2	476.279118	950.543683	-0.22324	-0.00010633	-0.89211	-0.00042489	-1.1154	-0.00053122	476.278771167644	51.651	0.41266	51.504	51.263	51.676	-0.14735					36	11	4	0	0	0	0.024209	1	5471	5471		47.657	18.487	1	1838400	+		86259	19912	60053	60151	95785	95785					0.06643242074335376
VPAELLVPN	9	Unmodified	_VPAELLVPN_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.279118	950.543683	-0.75818	-0.00036111	-0.49715	-0.00023678	-1.2553	-0.00059789	476.2790349826081	51.375	0.56387	51.462	51.116	51.679	0.087006	0.072547	0.00062999	NaN	47.657	46	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1565400	+		86260	19912	60053	60151							0.06643242074335376
VPAELLVPN	9	Unmodified	_VPAELLVPN_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	476.279118	950.543683	-0.33301	-0.0001586	0.17547	8.3573E-05	-0.15754	-7.5032E-05	476.2791783713341	51.407	0.42257	51.131	50.891	51.313	-0.27643	-0.25878	0.0012707	NaN	47.657	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135200	+		86261	19912	60053	60151							0.06643242074335376
VPAGARVDAL	10	Unmodified	_VPAGARVDAL_					0	0	0		nc|ENSG00000100124|Q6NXT1-2|ANKRD54;ENST00000498417.5_1_22:38227952-38229926:-|nuORF	nc|ENSG00000100124|Q6NXT1-2|ANKRD54	nc|ENSG00000100124|Q6NXT1-2|ANKRD54	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	484.7796325683594	2	484.779816	967.545079	-0.55184	-0.00026752	-0.48793	-0.00023654	-1.0398	-0.00050406	484.77954223867596	38.783	1.0132	38.684	38.398	39.411	-0.098755					57	27	3	0	0	0	0.62679	1	3256	3256		73.975	8.5094	1	5665000			86262	15620	60054	60152	95786	95786					0.06000876163091107
VPAGARVDAL	10	Unmodified	_VPAGARVDAL_					0	0	0		nc|ENSG00000100124|Q6NXT1-2|ANKRD54;ENST00000498417.5_1_22:38227952-38229926:-|nuORF	nc|ENSG00000100124|Q6NXT1-2|ANKRD54	nc|ENSG00000100124|Q6NXT1-2|ANKRD54	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7794189453125	2	484.779816	967.545079	-1.3933	-0.00067547	0.22353	0.00010837	-1.1698	-0.0005671	484.7798639632356	38.977	0.83774	39.001	38.688	39.526	0.023727					53	22	3	0	0	0	0.52589	2	3241	3241;3259		85.359	8.5094	1	5065100			86263	15620	60054	60152	95787;95788	95787					0.06000876163091107
VPAHIFNHSI	10	Unmodified	_VPAHIFNHSI_					0	0	0		ENSG00000196228|ENST00000681802|SULT1C3	ENSG00000196228|ENST00000681802|SULT1C3	ENSG00000196228|ENST00000681802|SULT1C3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.7857666015625	2	567.806365	1133.59818	-0.61645	-0.00035002	-0.12523	-7.1108E-05	-0.74168	-0.00042113	567.8065384376245	44.982	0.60712	44.771	44.514	45.121	-0.21109					23	13	2	0	0	0	0.03519	1	4239	4239		14.137	0	1	265990			86264	9839	60055	60153	95789	95789					0.03672253945751436
VPAKKSASL	9	Unmodified	_VPAKKSASL_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.7745056152344	2	450.779285	899.544017	0.57254	0.00025809	-0.45074	-0.00020319	0.1218	5.4905E-05	450.7788567299024	21.348	0.91006	21.171	20.918	21.828	-0.17721					33	18	2	0	0	0	0.024495	1	656	656		19.997	19.169	1	261940			86265	9922	60056	60154	95790	95790					0.09022661794188025
VPAKKSASL	9	Unmodified	_VPAKKSASL_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	450.779285	899.544017	-0.62912	-0.00028359	1.0374	0.00046763	0.40827	0.00018404	450.77954318345496	21.091	0.64013	21.091	20.801	21.441	0	-0.080145	0.00044518	NaN	19.997	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56957			86266	9922	60056	60154							0.09022661794188025
VPAKKSASL	9	Unmodified	_VPAKKSASL_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.779285	899.544017	-0.21673	-9.7695E-05	0.66578	0.00030012	0.44906	0.00020243	450.7793226749117	21.223	0.6363	21.133	20.863	21.499	-0.090092	-0.038081	0.00011016	NaN	19.997	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67587			86267	9922	60056	60154							0.09022661794188025
VPAKKSASL	9	Unmodified	_VPAKKSASL_					0	0	0		nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	450.779285	899.544017	0.40528	0.00018269	0.035448	1.5979E-05	0.44073	0.00019867	450.7788281194629	21.021	1.0319	21.09	20.465	21.497	0.069462	-0.080871	-0.00045812	NaN	19.997	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68147			86268	9922	60056	60154							0.09022661794188025
VPAKPEKTAR	10	Unmodified	_VPAKPEKTAR_					0	0	0			REV__ENSG00000198740|ENST00000430262|ZNF652	REV__ENSG00000198740|ENST00000430262|ZNF652	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.3427124023438	2	548.827298	1095.64004	-0.50016	-0.0002745	-1.5253	-0.00083713	-2.0255	-0.0011116	549.3265249685434	50.239	0.17001	50.088	49.96	50.13	-0.1512					5	4	2	0	0	0	0.03519	1	5206	5206		25.574	3.6142	1	80226	+		86269	28460	60057	60155	95791	95791					0.09604809634265621
VPAKRVGL	8	Unmodified	_VPAKRVGL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2404479980469	2	420.276712	838.538872	0.4081	0.00017151	2.2074	0.00092773	2.6155	0.0010992	420.2775625037898	37.172	0.2977	37.108	36.866	37.163	-0.063385					10	7	2	0	0	0	0.027866	1	2989	2989		33.516	19.74	1	102070			86270	7521	60058	60156	95792	95792					0.11314402722223349
VPAKRVGL	8	Unmodified	_VPAKRVGL_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	420.276712	838.538872	0.22438	9.4301E-05	8.5311	0.0035854	8.7555	0.0036797	420.28040030415735	37.283	0.33843	37.315	37.112	37.45	0.032269	0.10319	0.0035835	NaN	24.203	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35840			86271	7521	60058	60156							0.11314402722223349
VPAKTVAGL	9	Unmodified	_VPAKTVAGL_					0	0	0			REV__nc|ENSG00000141384|Q92750-2|TAF4B	REV__nc|ENSG00000141384|Q92750-2|TAF4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.26983642578125	2	428.268553	854.522553	0.047683	2.0421E-05	0.24375	0.00010439	0.29143	0.00012481	428.2685018199434	40.927	0.6567	40.95	40.562	41.219	0.023003					52	18	4	0	0	0	0.43973	1	3595	3595		63.306	0.32785	1	3675200	+		86272	24077	60059	60157	95793	95793					0.0894727676545699
VPALEPTET	9	Unmodified	_VPALEPTET_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.7534484863281	2	478.75039	955.486227	0.06535	3.1286E-05	4.2801	0.0020491	4.3455	0.0020804	478.752473881619	33.469	0.98684	33.469	32.79	33.777	0					89	26	4	0	0	0	0.40179	1	2460	2460		65.803	5.5092	1	14467000			86273	2107	60060	60158	95794	95794					0.006703550781026024
VPALEPTET	9	Unmodified	_VPALEPTET_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	478.7542724609375	2	478.75039	955.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.51	1	33.566	33.066	34.066	0.056572								0	0	0	0.33713	1	2374	2374		65.803	10.299	1				86274	2107	60060	60158	95795	95795					0.006703550781026024
VPALLEGAL	9	Unmodified	_VPALLEGAL_					0	0	0			REV__BIRC6-SPAST|1|fusion	REV__BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7681884765625	2	441.768386	881.522219	-0.32178	-0.00014215	-0.70805	-0.00031279	-1.0298	-0.00045495	441.7681351071089	102.79	1.3357	102.79	102.48	103.82	0					96	32	5	0	0	0	0.75282	1	13245	13245		42.474	0	1	28165000	+		86275	19208	60061	60159	95796	95796					0.07671857045602337
VPAPRAVAV	9	Unmodified	_VPAPRAVAV_					0	0	0			REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	440.2742919921875	2	440.27417	878.533787	0.032739	1.4414E-05	-0.17859	-7.8628E-05	-0.14585	-6.4213E-05	440.274075435859	42.842	0.79799	42.842	42.534	43.332	0					54	21	3	0	0	0	0.36105	2	3962	3962;3986		68.485	10.673	1	12206000	+		86276	20211	60062	60160	95797;95798	95797					0.08966098859605154
VPAPRAVAV	9	Unmodified	_VPAPRAVAV_					0	0	0			REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	440.2743835449219	2	440.27417	878.533787	0.50925	0.00022421	-0.60368	-0.00026578	-0.094428	-4.1574E-05	440.27386999663213	42.89	0.73027	42.916	42.605	43.335	0.026012					50	19	3	0	0	0	0.26797	2	3916	3916;3928		79.939	22.128	1	11981000	+		86277	20211	60062	60160	95799;95800	95799					0.08966098859605154
VPAPRAVAV	9	Unmodified	_VPAPRAVAV_					0	0	0			REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	REV__ENST00000505366.1_1_5:32406854-32444764:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	440.27417	878.533787	0.50925	0.00022421	-0.60368	-0.00026578	-0.094428	-4.1574E-05	440.27386999663213	42.89	0.73027	42.916	42.605	43.335	0.026012	0.054058	-0.00024105	NaN	79.939	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11981000	+		86278	20211	60062	60160							0.08966098859605154
VPAQPAARA	9	Unmodified	_VPAQPAARA_					0	0	0		ENST00000370223.7_2_10:102766720-102766858:+|nuORF	ENST00000370223.7_2_10:102766720-102766858:+|nuORF	ENST00000370223.7_2_10:102766720-102766858:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.21075439453125	2	440.753601	879.49265	-0.17013	-7.4986E-05	-4.0246	-0.0017739	-4.1948	-0.0018489	440.7516479038244	50.378	0.48224	50.272	50.049	50.531	-0.10558					23	12	3	0	0	0	0.024354	1	5138	5138		16.473	0	1	281460			86279	12951	60063	60161	95801	95801					0.04808337820122688
VPAQRGYGI	9	Unmodified	_VPAQRGYGI_					0	0	0			REV__ENSG00000138622|ENST00000261917|HCN4	REV__ENSG00000138622|ENST00000261917|HCN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.76788330078125	2	480.766709	959.518865	-0.4943	-0.00023764	-0.428	-0.00020577	-0.9223	-0.00044341	480.766213553103	36.649	1.85	36.687	35.569	37.419	0.038044					129	49	3	0	0	0	0.52323	1	2878	2878		57.811	3.0466	1	5721100	+		86280	23869	60064	60162	95802	95802					0.03748606991609904
VPASQVRSL	9	Unmodified	_VPASQVRSL_					0	0	0		nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM	nc|ENSG00000173482|P28827|PTPRM	nc|ENSG00000173482|P28827|PTPRM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7605895996094	2	478.779816	955.545079	0.087116	4.1709E-05	3.6094	0.0017281	3.6965	0.0017698	478.78114208868664	33.695	0.38914	33.752	33.461	33.85	0.056572					11	9	2	0	0	0	0.023007	1	2410	2410		66.429	0	1	84856			86281	8377	60065	60163	95803	95803					0.0655287616308442
VPASRCAI	8	Unmodified	_VPASRCAI_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.18304443359375	2	408.723455	815.432358	0.24878	0.00010168	2.7934	0.0011417	3.0421	0.0012434	408.72370385818795	24.75	0.21713	24.575	24.425	24.643	-0.17484					6	4	2	0	0	0	0.027866	1	1108	1108		19.36	0	1	11536	+		86282	25140	60066	60164	95804	95804					0.01725904165391512
VPASRRKKGKG	11	Unmodified	_VPASRRKKGKG_					0	0	0			REV__ENST00000545245.5_2_11:61580788-61582536:-|nuORF	REV__ENST00000545245.5_2_11:61580788-61582536:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	591.811767578125	2	592.372738	1182.73092	-0.28425	-0.00016838	-1.4896	-0.00088237	-1.7738	-0.0010508	592.3714153499702	97.018	0.70737	97.027	96.619	97.326	0.0089111					30	15	3	0	0	0	0.024727	1	12295	12295		24.519	0	1	169230	+		86283	34778	60067	60165	95805	95805					0.1468669840239727
VPASVMRAR	9	Unmodified	_VPASVMRAR_					0	0	0		ENST00000526715.5_1_11:46639304-46639823:+|nuORF;ENST00000579280.1_1_11:46639304-46642626:+|nuORF;ENST00000530942.1_1_11:46639304-46646882:+|nuORF;ENST00000530500.5_1_11:46639304-46666920:+|nuORF;ENST00000583249.5_1_11:46639304-46642626:+|nuORF;ENST00000578626.5_1_11:46639304-46651635:+|nuORF;ENST00000580238.5_2_11:46639304-46642626:+|nuORF;ENST00000581416.5_2_11:46639304-46642626:+|nuORF;ENST00000577256.5_1_11:46639304-46651635:+|nuORF;ENST00000534610.5_1_11:46639304-46666898:+|nuORF;ENST00000529655.5_1_11:46639304-46666898:+|nuORF	ENST00000526715.5_1_11:46639304-46639823:+|nuORF	ENST00000526715.5_1_11:46639304-46639823:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2952880859375	2	493.781836	985.549119	-0.70755	-0.00034937	-3.1346	-0.0015478	-3.8422	-0.0018972	493.78019817351804	35.48	0.47213	35.265	35.062	35.534	-0.21555					17	11	2	0	0	0	0.024487	1	2696	2696		17.365	0	1	125050			86284	16128	60068	60166	95806	95806					0.055766423851537184
VPASVTVKR	9	Unmodified	_VPASVTVKR_					0	0	0			REV__ENST00000514424.5_1_5:177651412-177651655:-|nuORF	REV__ENST00000514424.5_1_5:177651412-177651655:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7612609863281	2	478.798009	955.581465	0.11786	5.6433E-05	-1.0234	-0.00048999	-0.9055	-0.00043355	478.79730521225554	33.932	0.93397	33.927	33.676	34.61	-0.0045624					50	23	3	0	0	0	0.024263	1	2501	2501		42.396	8.2236	1	968010	+		86285	34172	60069	60167	95807	95807					0.10189753059796658
VPASVTVKR	9	Unmodified	_VPASVTVKR_					0	0	0			REV__ENST00000514424.5_1_5:177651412-177651655:-|nuORF	REV__ENST00000514424.5_1_5:177651412-177651655:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7605895996094	2	478.798009	955.581465	-0.36511	-0.00017481	-0.63238	-0.00030278	-0.99749	-0.0004776	478.7975336154991	33.934	0.64411	33.991	33.654	34.298	0.056572					36	15	3	0	0	0	0.023817	1	2410	2410		60.972	15.02	1	807470	+		86286	34172	60069	60167	95808	95808					0.10189753059796658
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.75994873046875	2	478.761623	955.508694	0.27162	0.00013004	-2.7325	-0.0013082	-2.4608	-0.0011782	478.76012637655305	33.912	1.0459	33.912	33.7	34.746	0					97	26	5	0	0	0	0.10174	4	2483	2471;2483;2501;2513		110.12	27.815	1	19029000			86287	2566	60070	60168	95809;95810;95811;95812	95810					0.029159992663721823
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.760009765625	2	478.761623	955.508694	0.0056597	2.7096E-06	-2.5273	-0.00121	-2.5216	-0.0012073	478.76028389743067	33.751	1.128	33.746	33.523	34.651	-0.0045624					93	28	5	0	0	0	0.082191	4	2449	2437;2449;2473;2485		116.9	29.149	1	19598000			86288	2566	60070	60168	95813;95814;95815;95816	95814					0.029159992663721823
VPATPHYPAD	10	Unmodified	_VPATPHYPAD_					0	0	0		nc|ENSG00000285133|P35638-2|DDIT3	nc|ENSG00000285133|P35638-2|DDIT3	nc|ENSG00000285133|P35638-2|DDIT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2637939453125	2	534.261456	1066.50836	-0.62005	-0.00033127	-3.4029	-0.001818	-4.0229	-0.0021493	534.2592939061893	31.05	0.45363	30.809	30.541	30.995	-0.24109					21	10	3	0	0	0	0.03519	1	2006	2006		53.351	31.392	1	171380			86289	18814	60071	60169	95817	95817					-0.022234204534925084
VPATPLTLA	9	Unmodified	_VPATPLTLA_					0	0	0			REV__nc|ENSG00000147813|Q6XQN6-2|NAPRT	REV__nc|ENSG00000147813|Q6XQN6-2|NAPRT	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7679748535156	2	441.768386	881.522219	0.37011	0.0001635	-1.3269	-0.00058618	-0.95679	-0.00042268	441.76786199204633	102.85	1.6021	102.85	102.5	104.11	-0.0046005					103	38	6	0	0	0	0.78069	2	13079	13079;13126		40.573	7.057	1	25278000	+		86290	36765	60072	60170	95818;95819	95818					0.07671857045613706
VPATPLTLA	9	Unmodified	_VPATPLTLA_					0	0	0			REV__nc|ENSG00000147813|Q6XQN6-2|NAPRT	REV__nc|ENSG00000147813|Q6XQN6-2|NAPRT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.76800537109375	2	441.768386	881.522219	0.61928	0.00027358	-1.6395	-0.00072428	-1.0202	-0.00045071	441.767731371388	103.03	1.3899	102.86	102.5	103.89	-0.17034					84	33	5	0	0	0	0.88411	1	12802	12802		33.516	0	1	21018000	+		86291	36765	60072	60170	95820	95820					0.07671857045613706
VPAVEIPT	8	Unmodified	_VPAVEIPT_					0	0	0		ENSG00000173212|ENST00000369500|MAB21L3	ENSG00000173212|ENST00000369500|MAB21L3	ENSG00000173212|ENST00000369500|MAB21L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	412.7130432128906	2	413.239461	824.46437	0.39272	0.00016229	-3.4357	-0.0014198	-3.043	-0.0012575	413.2379424252752	73.425	0.85983	73.425	72.656	73.516	0					28	21	2	0	0	0	0.027866	1	8933	8933		35.201	14.719	1	202600			86292	8354	60073	60171	95821	95821					0.04511595120175116
VPAVSLMHVE	10	Unmodified	_VPAVSLMHVE_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8057250976562	2	541.289159	1080.56377	-0.48985	-0.00026515	-3.2721	-0.0017712	-3.7619	-0.0020363	541.287274198852	52.716	0.45977	52.808	52.404	52.864	0.091938					21	11	3	0	0	0	0.03519	1	5594	5594		42.396	15.703	1	567950	+		86293	24428	60074	60172	95822	95822					0.026706697426561732
VPAWLKSL	8	Unmodified	_VPAWLKSL_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.2486267089844	2	457.278921	912.543289	-0.29827	-0.00013639	-2.7097	-0.0012391	-3.008	-0.0013755	457.2776801415908	30.731	0.62208	30.741	30.332	30.954	0.0096836					21	14	2	0	0	0	0.027866	1	1964	1964		33.516	3.674	1	54456			86294	956	60075	60173	95823	95823					0.08351867145120195
VPAWLKSL	8	Unmodified	_VPAWLKSL_					0	0	0		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.24822998046875	2	457.278921	912.543289	-0.4494	-0.0002055	-3.3572	-0.0015352	-3.8066	-0.0017407	457.2771373979247	30.27	0.78829	30.344	30.129	30.917	0.074314					33	18	2	0	0	0	0.027866	1	1882	1882		42.474	14.22	1	82867			86295	956	60075	60173	95824	95824					0.08351867145120195
VPCLQNKVL	9	Unmodified	_VPCLQNKVL_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.76788330078125	2	507.294245	1012.57394	-0.62278	-0.00031593	1.3622	0.00069102	0.73939	0.00037509	507.7975703118726	60.98	0.41939	60.766	60.531	60.95	-0.2134					15	10	2	0	0	0	0.024183	1	7007	7007		31.955	0	1	58988	+		86296	22872	60076	60174	95825	95825					0.06815277467853775
VPCPLREP	8	Unmodified	_VPCPLREP_					0	0	0			REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.75921630859375	2	455.744388	909.474223	0.54989	0.00025061	-2.7048	-0.0012327	-2.1549	-0.00098208	455.7423631056468	47.372	0.72545	47.219	46.817	47.542	-0.15301					37	19	3	0	0	0	0.027866	1	4709	4709		55.504	13.03	1	241890	+		86297	32469	60077	60175	95826	95826					0.015864598539110375
VPCPSPPAR	9	Unmodified	_VPCPSPPAR_					0	0	0		ENST00000265052.9_1_3:127410292-127410427:-|nuORF	ENST00000265052.9_1_3:127410292-127410427:-|nuORF	ENST00000265052.9_1_3:127410292-127410427:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.3053894042969	2	462.242012	922.469472	0.55712	0.00025752	3.6754	0.0016989	4.2326	0.0019565	462.2435639027099	66.075	0.34537	66.075	65.799	66.145	0					12	8	2	0	0	0	0.024436	1	7861	7861		47.916	22.465	1	143130			86298	11583	60078	60176	95827	95827					0.005135757111474959
VPCSAPRRA	9	Unmodified	_VPCSAPRRA_					0	0	0			REV__SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|17|3|sense	REV__SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|17|3|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7607421875	2	478.758361	955.502169	-0.0057592	-2.7572E-06	1.2596	0.00060306	1.2539	0.0006003	478.7598129096646	33.667	1.8776	33.724	32.647	34.524	0.056572					112	48	5	0	0	0	0.33245	1	2435	2435		71.296	7.9894	1	20332000	+		86299	37636	60079	60177	95828	95828					0.022637828340066335
VPCSHPYIG	9	Unmodified	_VPCSHPYIG_					0	0	0		SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant;ENSG00000014824|ENST00000264451|SLC30A9;ENST00000510460.1_1_4:41992668-42022533:+|nuORF	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	SLC30A9|p.G426Vfs*9|1|0.33|ENSG00000014824|chr4:42070549-42070549|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2926025390625	2	486.73402	971.453487	-1.2428	-0.00060489	-2.4787	-0.0012065	-3.7214	-0.0018114	486.73266589206236	55.865	0.76045	55.963	55.523	56.283	0.097893					29	20	2	0	0	0	0.024436	1	6056	6056		30.504	11.144	1	170820			86300	925	60080	60178	95829	95829					-0.033381305257421445
VPDAGVYKS	9	Unmodified	_VPDAGVYKS_					0	0	0		ENSG00000277399|ENST00000616987|GPR179;nc|ENSG00000277399|Q6PRD1|GPR179	ENSG00000277399|ENST00000616987|GPR179	ENSG00000277399|ENST00000616987|GPR179	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.24505615234375	2	468.245275	934.475997	0.40243	0.00018843	-1.4974	-0.00070113	-1.0949	-0.0005127	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.98128	1	12922	12922		24.203	3.2558	1	4364500			86301	11055	60081	60179	95830	95830					0.006137921435083626
VPDLWSNH	8	Unmodified	_VPDLWSNH_					0	0	0			REV__ENST00000389341.9_1_19:42594034-42594316:-|nuORF	REV__ENST00000389341.9_1_19:42594034-42594316:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	484.236083984375	2	484.235242	966.45593	0.72235	0.00034979	1.2027	0.00058238	1.925	0.00093216	484.2357566892018	82.977	1.0398	82.757	82.086	83.126	-0.22015					55	23	3	0	0	0	0.91239	1	9999	9999		50.025	5.9077	1	604890	+		86302	31568	60082	60180	95831	95831					-0.028639587964335078
VPDLWSNH	8	Unmodified	_VPDLWSNH_					0	0	0			REV__ENST00000389341.9_1_19:42594034-42594316:-|nuORF	REV__ENST00000389341.9_1_19:42594034-42594316:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	484.235242	966.45593	0.72235	0.00034979	1.2027	0.00058238	1.925	0.00093216	484.2357566892018	82.977	1.0398	82.757	82.086	83.126	-0.22015	0.049446	-0.0002369	NaN	50.025	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604890	+		86303	31568	60082	60180							-0.028639587964335078
VPDLWSNH	8	Unmodified	_VPDLWSNH_					0	0	0			REV__ENST00000389341.9_1_19:42594034-42594316:-|nuORF	REV__ENST00000389341.9_1_19:42594034-42594316:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	484.235242	966.45593	-0.12528	-6.0665E-05	1.7172	0.00083153	1.5919	0.00077087	484.2360693812538	82.849	1.2972	82.709	81.999	83.296	-0.14014	0.00093864	0.00026141	NaN	50.025	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	533930	+		86304	31568	60082	60180							-0.028639587964335078
VPDSERVI	8	Unmodified	_VPDSERVI_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7509460449219	2	457.750724	913.486896	-0.43553	-0.00019937	0.78006	0.00035707	0.34452	0.00015771	457.7508979773472	29.825	0.95444	29.834	29.209	30.164	0.0086708					52	23	4	0	0	0	0.6536	1	1841	1841		71.296	2.5089	1	1174300			86305	3737	60083	60181	95832	95832					0.026691945178072274
VPDSERVI	8	Unmodified	_VPDSERVI_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.7509765625	2	457.750724	913.486896	-0.34771	-0.00015916	0.45482	0.0002082	0.10712	4.9033E-05	457.7507988385714	29.959	1.2242	29.715	29.358	30.582	-0.24415					67	28	4	0	0	0	0.39824	1	1877	1877		97.473	8.8298	1	1876100			86306	3737	60083	60181	95833	95833					0.026691945178072274
VPDSERVI	8	Unmodified	_VPDSERVI_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.7508850097656	2	457.750724	913.486896	-0.83299	-0.0003813	0.88098	0.00040327	0.047989	2.1967E-05	457.7510139270922	29.814	1.2658	29.641	29.365	30.631	-0.17258					73	29	5	0	0	0	0.74904	1	1858	1858		63.306	0.32785	1	1777000			86307	3737	60083	60181	95834	95834					0.026691945178072274
VPDSERVI	8	Unmodified	_VPDSERVI_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.75103759765625	2	457.750724	913.486896	-0.052218	-2.3903E-05	0.01558	7.1316E-06	-0.036638	-1.6771E-05	457.7506345967356	29.835	0.92331	29.686	29.296	30.219	-0.14952					58	21	4	0	0	0	0.39824	2	1847	1825;1847		97.473	5.5309	1	1834400			86308	3737	60083	60181	95835;95836	95836					0.026691945178072274
VPDSLRDI	8	Unmodified	_VPDSLRDI_					0	0	0		ENSG00000109576|ENST00000337664|AADAT;nc|ENSG00000109576|Q8N5Z0-2|AADAT	ENSG00000109576|ENST00000337664|AADAT	ENSG00000109576|ENST00000337664|AADAT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.7507019042969	2	457.750724	913.486896	-0.34771	-0.00015916	0.45482	0.0002082	0.10712	4.9033E-05	457.7507988385714	29.959	1.2242	29.715	29.358	30.582	-0.24415					67	28	4	0	0	0	0.91956	1	1903	1903		49.442	1.5259	1	1876100			86309	2982	60084	60182	95837	95837					0.026691945178072274
VPDSPKII	8	Unmodified	_VPDSPKII_					0	0	0			REV__nc|ENSG00000169641|Q86V48-2|LUZP1	REV__nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	434.7594299316406	2	434.760561	867.506569	0.66526	0.00028923	-3.4121	-0.0014835	-2.7469	-0.0011942	434.7589968686671	86.998	1.8354	86.856	86.147	87.982	-0.14218					104	43	4	0	0	0	0.95417	1	10549	10549		44.531	3.9584	1	5508400	+		86310	26389	60085	60183	95838	95838					0.06751570528570028
VPDSRIGGY	9	Unmodified	_VPDSRIGGY_					0	0	0			REV__ENSG00000221878|ENST00000406070|PSG7	REV__ENSG00000221878|ENST00000406070|PSG7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.7611389160156	2	482.248349	962.482145	-0.21048	-0.0001015	-3.2715	-0.0015777	-3.4819	-0.0016792	482.2486315884029	42.094	0.40438	41.961	41.678	42.082	-0.13219					19	11	3	0	0	0	0.024506	1	3781	3781		30.504	11.144	1	88073	+		86311	28835	60086	60184	95839	95839					-0.0005968962494762309
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	585.3114013671875	2	585.311677	1168.6088	-1.6841	-0.0009857	1.1515	0.000674	-0.53254	-0.0003117	585.3123878498227	50.005	2.1602	50.005	49.473	51.633	0					201	61	5	0	0	0	0.00051858	11	5257	5164;5175;5186;5197;5209;5221;5234;5245;5257;5269;5290		152.06	64.364	1	22067000			86312	7366	60087	60185	95840;95841;95842;95843;95844;95845;95846;95847;95848;95849;95850	95848					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	585.3114624023438	2	585.311677	1168.6088	-1.1122	-0.00065096	0.63044	0.000369	-0.48172	-0.00028195	585.3120940926426	50.265	1.9822	50.114	49.558	51.54	-0.1512					194	56	5	0	0	0	0.0056542	11	5222	5177;5187;5198;5209;5222;5235;5247;5258;5270;5284;5297		145.46	63.22	1	21830000			86313	7366	60087	60185	95851;95852;95853;95854;95855;95856;95857;95858;95859;95860;95861	95855					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.R326Dfs*22|1|0.05|ENSG00000165119|chr9:83971698-83971704|TCCCTCT/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	585.3118286132812	2	585.311677	1168.6088	0.38629	0.0002261	-0.8429	-0.00049336	-0.45661	-0.00026726	585.3112358050024	49.955	2.0658	50.036	49.472	51.538	0.080994					202	58	5	0	0	0	7.412E-05	11	5158	5078;5089;5099;5110;5122;5134;5146;5158;5170;5183;5197		169.65	59.672	1	22411000			86314	7366	60087	60185	95862;95863;95864;95865;95866;95867;95868;95869;95870;95871;95872	95869					0.031241918095247456
VPEEARPAL	9	Unmodified	_VPEEARPAL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.270751953125	2	491.271824	980.529095	0.27408	0.00013465	-0.61546	-0.00030236	-0.34138	-0.00016771	491.2714613672253	41.319	1.1868	41.319	40.8	41.987	0					74	33	3	0	0	0	0.26966	2	3707	3707;3724		79.713	23.966	1	3794300			86315	4571	60088	60186	95873;95874	95873					0.03805169926170038
VPEEARPAL	9	Unmodified	_VPEEARPAL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2713623046875	2	491.271824	980.529095	-0.03917	-1.9243E-05	-0.35278	-0.00017331	-0.39195	-0.00019255	491.2715537746869	41.501	1.5186	41.378	40.476	41.994	-0.12318					90	42	4	0	0	0	0.067814	3	3736	3712;3723;3736		122.18	58.87	1	3641600			86316	4571	60088	60186	95875;95876;95877	95877					0.03805169926170038
VPEEARPAL	9	Unmodified	_VPEEARPAL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.2704772949219	2	491.271824	980.529095	-0.15224	-7.4793E-05	-0.20808	-0.00010222	-0.36032	-0.00017702	491.27162148688564	41.48	0.97721	41.503	41.076	42.053	0.023006					73	27	4	0	0	0	0.2101	2	3692	3692;3704		87.696	35.596	1	3968800			86317	4571	60088	60186	95878;95879	95878					0.03805169926170038
VPEELELL	8	Unmodified	_VPEELELL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	471.263133	940.511714	-0.6119	-0.00028837	2.345	0.0011051	1.7331	0.00081673	471.26406168873	49.458	1.0273	49.532	49.242	50.269	0.074196					44	28	2	0	0	0	0.027866	1	5141	5141		35.201	1.6851	1	881150	+		86318	20977	60089	60187	95880	95880					0.03907829600530022
VPEGLIRIY	9	Unmodified	_VPEGLIRIY_					0	0	0		nc|ENSG00000065621|Q9H4Y5-2|GSTO2;ENSG00000065621|ENST00000338595|GSTO2	nc|ENSG00000065621|Q9H4Y5-2|GSTO2	nc|ENSG00000065621|Q9H4Y5-2|GSTO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7792358398438	2	530.313492	1058.61243	-0.45831	-0.00024305	1.0934	0.00057987	0.63513	0.00033682	530.8156117995012	64.029	0.47161	63.837	63.529	64	-0.19243					20	11	2	0	0	0	0.024427	1	7243	7243		42.396	3.3746	1	507310			86319	1316	60090	60188	95881	95881					0.08546906374044738
VPEGPRDL	8	Unmodified	_VPEGPRDL_					0	0	0			REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2656555175781	2	441.737617	881.460681	0.3708	0.0001638	0.51326	0.00022673	0.88406	0.00039052	441.73807987048616	39.533	0.8766	39.533	39.148	40.024	0					29	24	2	0	0	0	0.027866	1	3377	3377		37.159	5.6293	1	119970	+		86320	34995	60091	60189	95882	95882					0.015209253463240202
VPEGPRDL	8	Unmodified	_VPEGPRDL_					0	0	0			REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	441.737617	881.460681	-0.71236	-0.00031468	2.0827	0.00092002	1.3704	0.00060535	441.7376686968406	39.429	0.22543	39.265	39.116	39.342	-0.16458	-0.13428	0.0012488	NaN	37.159	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31393	+		86321	34995	60091	60189							0.015209253463240202
VPEHACLLL	9	Unmodified	_VPEHACLLL_					0	0	0		ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF	ENST00000450954.5_1_2:114386257-114399703:+|nuORF	ENST00000450954.5_1_2:114386257-114399703:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.7745056152344	2	497.773145	993.531738	0.48999	0.00024391	3.2824	0.0016339	3.7724	0.0018778	497.7747342576897	100.8	1.2787	100.67	100.4	101.68	-0.12576					63	32	3	0	0	0	0.33184	1	12526	12526		71.378	2.5911	1	770490			86322	14287	60092	60190	95883	95883					0.03471302059483605
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.2841796875	2	528.284597	1054.55464	-0.43275	-0.00022861	-0.11052	-5.8386E-05	-0.54327	-0.000287	528.2845244630541	87.175	2.0473	87.175	85.956	88.003	0					100	48	4	0	0	0	0.039744	3	10953	10942;10953;10965		133.81	17.718	1	11263000	+		86323	20753	60093	60191	95884;95885;95886	95885					0.029545996579599887
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.2842407226562	2	528.284597	1054.55464	0.65879	0.00034803	-1.1992	-0.00063351	-0.54039	-0.00028548	528.2839205294782	87.138	1.9313	87.159	85.942	87.873	0.021263					103	45	4	0	0	0	0.039744	1	10876	10876		133.81	4.9515	1	11231000	+		86324	20753	60093	60191	95887	95887					0.029545996579599887
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.2842407226562	2	528.284597	1054.55464	-0.25277	-0.00013353	0.28915	0.00015275	0.036385	1.9222E-05	528.284590799653	87.227	1.3888	87.049	86.306	87.695	-0.17875					93	32	5	0	0	0	0.23085	1	10594	10594		84.916	5.2029	1	2268400	+		86325	20753	60093	60191	95888	95888					0.029545996579599887
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.284423828125	2	528.284597	1054.55464	0.25837	0.00013649	-0.28238	-0.00014918	-0.024012	-1.2685E-05	528.2842882139303	87.203	1.4327	87.066	86.327	87.76	-0.13613					94	33	5	0	0	0	0.16468	2	10600	10600;10613		96.19	2.675	1	2151300	+		86326	20753	60093	60191	95889;95890	95889					0.029545996579599887
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2843017578125	2	528.284597	1054.55464	0.040374	2.1329E-05	-0.17496	-9.2431E-05	-0.13459	-7.1102E-05	528.2843800053182	87.191	1.5307	87.053	86.136	87.667	-0.13734					93	35	5	0	0	0	0.42604	1	10576	10576		64.207	4.089	1	2169600	+		86327	20753	60093	60191	95891	95891					0.029545996579599887
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	528.284597	1054.55464	-0.43275	-0.00022861	-0.11052	-5.8386E-05	-0.54327	-0.000287	528.2845244630541	87.175	2.0473	87.175	85.956	88.003	0	0.068913	0.00037432	NaN	133.81	100	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11263000	+		86328	20753	60093	60191							0.029545996579599887
VPEPGDPAPP	10	Unmodified	_VPEPGDPAPP_					0	0	0		ENST00000478927.5_1_3:119298448-119301006:+|nuORF;ENST00000481816.5_3_3:119298289-119299348:+|nuORF;ENST00000478399.5_1_3:119298211-119298877:+|nuORF;ENST00000471850.1_1_3:119298364-119306722:+|nuORF	ENST00000478927.5_1_3:119298448-119301006:+|nuORF	ENST00000478927.5_1_3:119298448-119301006:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.7583923339844	2	488.242732	974.470912	-0.82901	-0.00040476	1.7242	0.00084184	0.89522	0.00043708	488.24355230071063	43.423	0.39723	43.423	43.224	43.621	0					13	10	2	0	0	0	0.03519	1	4045	4045		79.451	40.645	1	164910			86329	14973	60094	60192	95892	95892					-0.017345117190984638
VPEPKEPSP	9	Unmodified	_VPEPKEPSP_					0	0	0		ENST00000426911.2_1_X:136066981-136067308:-|nuORF	ENST00000426911.2_1_X:136066981-136067308:-|nuORF	ENST00000426911.2_1_X:136066981-136067308:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2625732421875	2	490.258382	978.502212	-0.068469	-3.3567E-05	3.435	0.0016841	3.3666	0.0016505	490.2607369837598	102.89	1.8693	102.76	102.36	104.23	-0.12783					75	48	2	0	0	0	0.83071	1	12789	12789		37.159	0	1	299510			86330	14097	60095	60193	95893	95893					0.012100613149982564
VPEQLTLL	8	Unmodified	_VPEQLTLL_					0	0	0			REV__nc|ENSG00000235927|Q8NBZ9|NEXN-AS1	REV__nc|ENSG00000235927|Q8NBZ9|NEXN-AS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.7718505859375	2	456.773668	911.532783	0.23368	0.00010674	-3.4645	-0.0015825	-3.2309	-0.0014758	456.77201428085914	89.216	1.5163	89.079	88.482	89.998	-0.13761					87	35	5	0	0	0	1.043	1	10892	10892		30.504	1.3541	1	3359400	+		86331	37152	60096	60194	95894	95894					0.07347839700048553
VPERIIHAL	9	Unmodified	_VPERIIHAL_					0	0	0		ENST00000377321.5_1_11:64575114-64575471:-|nuORF	ENST00000377321.5_1_11:64575114-64575471:-|nuORF	ENST00000377321.5_1_11:64575114-64575471:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.3195190429688	2	524.319109	1046.62366	-0.43752	-0.0002294	0.69098	0.0003623	0.25346	0.00013289	524.3193446231608	64.404	0.73759	64.404	64.062	64.8	0					36	19	2	0	0	0	0.62163	1	7581	7581		51.335	3.6781	1	1524300			86332	13204	60097	60195	95895	95895					0.10221728468172842
VPERTLGPL	9	Unmodified	_VPERTLGPL_					0	0	0			REV__ENSG00000167615|ENST00000326764|LENG8	REV__ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.291259765625	2	491.290017	980.565481	-0.47954	-0.00023559	1.1014	0.00054109	0.62182	0.00030549	491.2906156740717	66.513	0.75294	66.544	66.324	67.077	0.030106					29	20	2	0	0	0	0.72875	1	7835	7835		44.117	0	1	1576500	+		86333	26165	60098	60196	95896	95896					0.07442046822893644
VPESWSLEV	9	Unmodified	_VPESWSLEV_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2861938476562	2	523.263665	1044.51278	-0.48842	-0.00025557	3.1499	0.0016482	2.6615	0.0013927	523.2674937441747	34.547	0.69484	34.543	34.112	34.807	-0.0045624					41	17	4	0	0	0	0.024541	1	2584	2584		16.473	5.6076	1	149400	+		86334	20103	60099	60197	95897	95897					-0.0076995603058094275
VPETCFVL	8	Unmodified	_VPETCFVL_					0	0	0		nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE;ENST00000478554.5_1_1:244624707-244662379:+|nuORF	nc|ENSG00000179397|Q5SY80-2|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.3023986816406	2	454.233322	906.45209	-0.37951	-0.00017239	-3.2957	-0.001497	-3.6752	-0.0016694	454.231745593512	60.561	0.54871	60.561	60.181	60.73	0					22	14	2	0	0	0	0.027866	1	6950	6950		74.517	32.042	1	166960			86335	8895	60100	60198	95898	95898					-0.0048776461450188435
VPETPKTAM	9	Unmodified	_VPETPKTAM_					0	0	0			REV__ENSG00000157703|ENST00000674285|SVOPL	REV__ENSG00000157703|ENST00000674285|SVOPL	MSMS	OPSCC_40_ClassI_Rep-2	5	486.9609069824219	2	487.254785	972.495018	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.33	1	105.2	104.7	105.7	-0.13099								0	0	0	0.5395	1	13118	13118		47.657	17.154	1		+		86336	25145	60101	60199	95899	95899					0.007670054429354423
VPFAYEHHQP	10	Unmodified	_VPFAYEHHQP_					0	0	0		ENST00000493441.5_1_1:246151710-246151785:-|nuORF	ENST00000493441.5_1_1:246151710-246151785:-|nuORF	ENST00000493441.5_1_1:246151710-246151785:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	407.8875732421875	3	408.864729	1223.57236	-0.14217	-5.8127E-05	-2.533	-0.0010357	-2.6752	-0.0010938	408.86346264633346	27.985	0.95528	27.74	27.246	28.202	-0.24524					63	22	4	0	0	0	0.03519	1	1531	1531		30.569	4.6771	1	649670			86337	15503	60102	60200	95900	95900					-0.030486402965379966
VPFFIVVSK	9	Unmodified	_VPFFIVVSK_					0	0	0		nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	nc|ENSG00000172432|Q9BX10-2|GTPBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	517.3208618164062	2	518.315503	1034.61645	-0.20108	-0.00010422	-1.9163	-0.00099326	-2.1174	-0.0010975	518.3135408150747	68.026	0.5023	68.026	67.792	68.295	0					18	12	2	0	0	0	0.024323	1	8124	8124		20.947	4.4738	1	153950			86338	8276	60103	60201	95901	95901					0.10052995867749814
VPFHLLEVGS	10	Unmodified	_VPFHLLEVGS_					0	0	0		ENST00000376592.5_2_1:11850232-11850490:-|nuORF	ENST00000376592.5_2_1:11850232-11850490:-|nuORF	ENST00000376592.5_2_1:11850232-11850490:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.76904296875	2	549.303124	1096.5917	-1.2304	-0.00067584	1.8016	0.00098963	0.57125	0.00031379	549.3038079253855	83.284	1.8891	83.31	82.445	84.334	0.026558					55	43	2	0	0	0	0.03519	1	10370	10370		29.15	0.89528	1	62649			86339	13183	60104	60202	95902	95902					0.04726315994366814
VPFKSVGF	8	Unmodified	_VPFKSVGF_					0	0	0		ENST00000555091.1_1_14:55119415-55135510:+|nuORF	ENST00000555091.1_1_14:55119415-55135510:+|nuORF	ENST00000555091.1_1_14:55119415-55135510:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.7663879394531	2	440.749996	879.485439	-0.49354	-0.00021753	4.1877	0.0018457	3.6942	0.0016282	440.7510661301631	56.02	0.21298	56.117	56.033	56.246	0.097893					7	5	2	0	0	0	0.027866	1	6152	6152		46.766	16.925	1	44636			86340	16672	60105	60203	95903	95903					0.04087605219717716
VPFLHEPR	8	Unmodified	_VPFLHEPR_					0	0	0			REV__nc|ENSG00000143502|Q5VX71-3|SUSD4	REV__nc|ENSG00000143502|Q5VX71-3|SUSD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.7752685546875	2	497.777077	993.5396	-0.099282	-4.942E-05	-4.2495	-0.0021153	-4.3488	-0.0021647	497.7749738154906	100.92	0.87547	100.75	100.46	101.33	-0.17178					51	22	3	0	0	0	0.71833	1	12511	12511		65.803	4.8312	1	606910	+		86341	36735	60106	60204	95904	95904					0.04257197371271104
VPFLHKLI	8	Unmodified	_VPFLHKLI_					0	0	0			REV__ENSG00000198015|ENST00000549982|MRPL42	REV__ENSG00000198015|ENST00000549982|MRPL42	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.27447509765625	2	483.810388	965.606223	-0.79862	-0.00038638	-3.4168	-0.0016531	-4.2155	-0.0020395	483.8085527017987	64.599	0.82066	64.337	63.901	64.722	-0.2626					50	21	3	0	0	0	0.027866	1	7622	7622		35.201	0	1	1174000	+		86342	28373	60107	60205	95905	95905					0.12204432933174303
VPFLVMISL	9	Unmodified	_VPFLVMISL_					0	0	0		ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1;ROBO1|p.L345*|1|0.51|ENSG00000169855|chr3:78714409-78714409|G/-|frameshift_variant	ENSG00000169855|ENST00000464233|ROBO1	ENSG00000169855|ENST00000464233|ROBO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8037109375	2	509.803914	1017.59328	0.28678	0.0001462	-0.72585	-0.00037004	-0.43907	-0.00022384	509.8034668110185	85.403	3.8129	85.208	84.132	87.945	-0.19508					243	90	5	0	0	0	0.90698	1	10429	10429		31.955	1.4512	1	3746700			86343	7980	60108	60206	95906	95906					0.08518233758786664
VPFPPARTV	9	Unmodified	_VPFPPARTV_					0	0	0		ENST00000524571.6_1_8:12043687-12049316:-|nuORF	ENST00000524571.6_1_8:12043687-12049316:-|nuORF	ENST00000524571.6_1_8:12043687-12049316:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	492.2852478027344	2	492.287277	982.560001	-0.36271	-0.00017856	-3.5511	-0.0017482	-3.9138	-0.0019267	492.28549420674483	93.237	1.1339	93.245	92.758	93.892	0.0077286					61	26	4	0	0	0	0.98697	1	11776	11776		23.042	2.0956	1	2546900			86344	16066	60109	60207	95907	95907					0.06802368031094375
VPFPPWCCL	9	Unmodified	_VPFPPWCCL_					0	0	0			REV__ENST00000585563.5_1_19:38800219-38806135:-|nuORF	REV__ENST00000585563.5_1_19:38800219-38806135:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.81640625	2	531.250991	1060.48743	0.21436	0.00011388	0.19389	0.000103	0.40825	0.00021688	531.250693728961	85.99	0.43033	85.84	85.534	85.964	-0.14967					15	9	2	0	0	0	0.024475	1	10403	10403		14.664	1.7049	1	41548	+		86345	35578	60110	60208	95908	95908					-0.04039425358359949
VPFRPLLF	8	Unmodified	_VPFRPLLF_					0	0	0			REV__ENST00000568975.5_1_16:68386292-68391124:+|nuORF	REV__ENST00000568975.5_1_16:68386292-68391124:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.1922912597656	2	494.802563	987.590573	0.25692	0.00012713	-3.6563	-0.0018092	-3.3994	-0.001682	494.80068588615984	24.839	0.58493	24.918	24.547	25.132	0.078344					17	12	2	0	0	0	0.027866	1	1058	1058		14.664	0	1	22610	+		86346	35359	60111	60209	95909	95909					0.09628146416139316
VPFRPLLF	8	Unmodified	_VPFRPLLF_					0	0	0			REV__ENST00000568975.5_1_16:68386292-68391124:+|nuORF	REV__ENST00000568975.5_1_16:68386292-68391124:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.802563	987.590573	-0.31751	-0.00015711	-5.2197	-0.0025827	-5.5372	-0.0027398	494.80054157189863	24.924	0.39661	24.924	24.697	25.094	0	-0.086637	-0.0013107	NaN	21.702	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31431	+		86347	35359	60111	60209							0.09628146416139316
VPFRPLLF	8	Unmodified	_VPFRPLLF_					0	0	0			REV__ENST00000568975.5_1_16:68386292-68391124:+|nuORF	REV__ENST00000568975.5_1_16:68386292-68391124:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	494.802563	987.590573	-1.0521	-0.00052057	-3.44	-0.0017021	-4.4921	-0.0022227	494.80062897749116	25.224	0.6313	25.19	24.681	25.313	-0.034395	0.17945	0.00045047	NaN	21.702	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32800	+		86348	35359	60111	60209							0.09628146416139316
VPFSFFGQI	9	Unmodified	_VPFSFFGQI_					0	0	0			REV__nc|ENSG00000161542|Q14558|PRPSAP1	REV__nc|ENSG00000161542|Q14558|PRPSAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7694091796875	2	521.273835	1040.53312	0.13711	7.1473E-05	-2.7151	-0.0014153	-2.578	-0.0013438	521.2719755232808	55.302	0.56092	55.302	55.049	55.61	0					20	14	2	0	0	0	0.024436	1	6136	6136		16.473	0	1	308290	+		86349	25386	60112	60210	95910	95910					0.014472594199105515
VPFTLRAR	8	Unmodified	_VPFTLRAR_					0	0	0			REV__ENST00000519504.5_1_8:134063059-134072525:-|nuORF	REV__ENST00000519504.5_1_8:134063059-134072525:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	480.7704772949219	2	480.292894	958.571235	0.071486	3.4334E-05	-1.3623	-0.00065429	-1.2908	-0.00061996	480.2920740187526	58.897	0.5884	58.709	58.431	59.019	-0.18795					22	14	2	0	0	0	0.027866	1	6476	6476		42.396	7.1954	1	246580	+		86350	34261	60113	60211	95911	95911					0.0902919012522716
VPFVCRVE	8	Unmodified	_VPFVCRVE_					0	0	0			REV__ENST00000475170.5_1_21:46305999-46306131:-|nuORF	REV__ENST00000475170.5_1_21:46305999-46306131:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.236328125	2	474.752213	947.489873	-0.032736	-1.5541E-05	-3.1412	-0.0014913	-3.174	-0.0015069	474.7506824056563	29.269	1.2311	29.272	28.927	30.158	0.0031357					44	30	2	0	0	0	0.027866	1	1834	1834		28.254	7.7724	1	229620	+		86351	33287	60114	60212	95912	95912					0.014027463709680887
VPFYLVGLLL	10	Unmodified	_VPFYLVGLLL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54931266-54960686:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.330810546875	2	567.352086	1132.68962	-0.50013	-0.00028375	4.3678	0.0024781	3.8677	0.0021943	567.3553481575628	90.94	0.29094	90.951	90.742	91.033	0.011276					10	6	2	0	0	0	0.03519	1	11440	11440		26.796	0	1	79306			86352	8703	60115	60213	95913	95913					0.12858124590388798
VPGAPHAVPAE	11	Unmodified	_VPGAPHAVPAE_					0	0	0			REV__ENST00000324771.12_1_6:30867268-30867352:+|nuORF	REV__ENST00000324771.12_1_6:30867268-30867352:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2574462890625	2	522.777274	1043.53999	-0.97635	-0.00051041	-3.6507	-0.0019085	-4.627	-0.0024189	522.7754088589586	23.201	0.37269	23.201	22.987	23.36	0					13	8	2	0	0	0	0.024776	1	890	890		49.442	15.269	1	105960	+		86353	30378	60116	60214	95914	95914					0.019965723004588654
VPGASEDTLL	10	Unmodified	_VPGASEDTLL_					0	0	0		nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	nc|ENSG00000196535|Q92614-2|MYO18A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.82415771484375	2	501.261122	1000.50769	-0.24117	-0.00012089	1.3602	0.00068183	1.1191	0.00056094	501.261475062378	33.964	0.42875	33.964	33.7	34.129	0					14	10	2	0	0	0	0.03519	1	2467	2467		45.952	0	1	86493			86354	9889	60117	60215	95915	95915					0.007457401068336367
VPGEQAREA	9	Unmodified	_VPGEQAREA_					0	0	0			REV__ENST00000356721.3_1_16:48396241-48399479:-|nuORF	REV__ENST00000356721.3_1_16:48396241-48399479:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7607421875	2	478.743431	955.472308	-0.10622	-5.085E-05	-3.9543	-0.0018931	-4.0605	-0.0019439	478.7416024849231	33.722	0.3606	33.778	33.693	34.054	0.056568					13	8	2	0	0	0	0.023417	1	2435	2435		68.787	22.835	1	115340	+		86355	30798	60118	60216	95916	95916					-0.007208776303400555
VPGEQKLL	8	Unmodified	_VPGEQKLL_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.26641845703125	2	442.26601	882.517468	-0.029686	-1.3129E-05	-1.1289	-0.0004993	-1.1586	-0.00051242	442.2652998935689	39.191	1.2632	39.191	38.433	39.696	0					93	34	4	0	0	0	1.0009	1	3317	3317		37.159	5.2042	1	11201000	+		86356	21788	60119	60217	95917	95917					0.07150972902854846
VPGFLLLVP	9	Unmodified	_VPGFLLLVP_					0	0	0		ENST00000543661.1_1_11:67231974-67232409:-|nuORF;ENST00000545682.5_1_11:67232087-67232680:-|nuORF;nc|ENSG00000172663|Q9H6X4-2|TMEM134;ENSG00000172663|ENST00000308022|TMEM134	ENST00000543661.1_1_11:67231974-67232409:-|nuORF;ENST00000545682.5_1_11:67232087-67232680:-|nuORF	ENST00000543661.1_1_11:67231974-67232409:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.2815246582031	2	477.804771	953.59499	0.19665	9.3962E-05	-4.3926	-0.0020988	-4.1959	-0.0020048	477.8025640078104	50.925	0.29998	50.776	50.561	50.861	-0.14916					14	8	2	0	0	0	0.024475	1	5308	5308		29.842	5.6388	1	207300			86357	16469;8294	60120	60218	95918	95918					0.11633610839032826
VPGFSRVET	9	Unmodified	_VPGFSRVET_					0	0	0			REV__nc|ENSG00000133216|P29323|EPHB2	REV__nc|ENSG00000133216|P29323|EPHB2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2655029296875	2	496.263999	990.513445	-0.2568	-0.00012744	2.8649	0.0014218	2.6081	0.0012943	496.26542763132267	37.219	3.0763	37.156	35.942	39.018	-0.063389					158	84	2	0	0	0	0.31037	1	3063	3063		74.255	4.6274	1	8069400	+		86358	36669	60121	60219	95919	95919					0.01780883409139733
VPGGLGALSL	10	Unmodified	_VPGGLGALSL_					0	0	0			REV__ENST00000601780.5_1_19:50985512-50985971:+|nuORF	REV__ENST00000601780.5_1_19:50985512-50985971:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2655029296875	2	442.26601	882.517468	-0.70766	-0.00031297	-0.32615	-0.00014425	-1.0338	-0.00045722	442.2656669175265	39.39	1.2996	39.414	38.608	39.908	0.023727					97	35	4	0	0	0	0.79525	2	3323	3323;3335		60.972	4.2509	1	10233000	+		86359	35863	60122	60220	95920;95921	95920					0.07150972902854846
VPGGLGVSVV	10	Unmodified	_VPGGLGVSVV_					0	0	0			REV__nc|ENSG00000145832|Q6ZT89-3|SLC25A48	REV__nc|ENSG00000145832|Q6ZT89-3|SLC25A48	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.265625	2	442.26601	882.517468	-0.51362	-0.00022716	-0.59909	-0.00026496	-1.1127	-0.00049211	442.26552280312796	39.247	1.2586	39.148	38.358	39.616	-0.098755					92	34	4	0	0	0	0.79525	2	3337	3325;3337		60.972	5.4677	1	10338000	+		86360	24435	60123	60221	95922;95923	95923					0.07150972902854846
VPGGMRAAR	9	Unmodified	_VPGGMRAAR_					0	0	0		ENST00000585207.5_1_17:15602971-15603073:+|nuORF	ENST00000585207.5_1_17:15602971-15603073:+|nuORF	ENST00000585207.5_1_17:15602971-15603073:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.7519836425781	2	457.753079	913.491604	-0.43553	-0.00019937	-4.3627	-0.001997	-4.7982	-0.0021964	457.7508979773472	29.825	0.95444	29.834	29.209	30.164	0.0086708					52	23	4	0	0	0	0.70186	1	1865	1865		45.952	1.8352	1	1174300			86361	17223	60124	60222	95924	95924					0.031398001795764685
VPGGRSKPLLS	11	Unmodified	_VPGGRSKPLLS_					0	0	0			REV__ENST00000598375.5_1_19:18699853-18700318:+|nuORF	REV__ENST00000598375.5_1_19:18699853-18700318:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.781005859375	2	555.835123	1109.65569	0.56813	0.00031579	-1.3146	-0.00073071	-0.7465	-0.00041493	555.8341954700214	37.422	0.32782	37.422	37.195	37.523	0					12	8	2	0	0	0	0.024727	1	3021	3021		39.253	13.679	1	84303	+		86362	35817	60125	60223	95925	95925					0.10525096151332036
VPGGRSKPLLS	11	Unmodified	_VPGGRSKPLLS_					0	0	0			REV__ENST00000598375.5_1_19:18699853-18700318:+|nuORF	REV__ENST00000598375.5_1_19:18699853-18700318:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.835123	1109.65569	0.083404	4.6359E-05	-0.86164	-0.00047893	-0.77824	-0.00043257	555.834410565425	37.488	0.29992	37.52	37.339	37.639	0.032269	0.049384	0.00026983	NaN	31.53	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47825	+		86363	35817	60125	60223							0.10525096151332036
VPGHQQLQQQ	10	Unmodified	_VPGHQQLQQQ_					0	0	0			REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1	REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.8023071289062	2	581.801811	1161.58907	2.3223	0.0013511	-1.9247	-0.0011198	0.39766	0.00023136	581.8004070973265	17.499	0.2484	17.499	17.349	17.598	0					12	4	4	0	0	0	1.1217	1	177	177		21.96	3.6978	1	35682	+		86364	36934	60126	60224	95926	95926					0.01473860589430842
VPGHRKGG	8	Unmodified	_VPGHRKGG_					0	0	0		ENST00000456159.1_1_7:116312547-116335818:+|nuORF	ENST00000456159.1_1_7:116312547-116335818:+|nuORF	ENST00000456159.1_1_7:116312547-116335818:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2336120605469	2	404.232836	806.45112	1.0198	0.00041225	-1.4334	-0.00057943	-0.41358	-0.00016718	404.2320221194493	84.559	4.1783	84.356	82.19	86.368	-0.20329					189	97	3	0	0	0	1.0574	1	10180	10180		20.482	5.8177	1	18249000			86365	14594	60127	60225	95927	95927					0.040152018514731935
VPGIPTQSAF	10	Unmodified	_VPGIPTQSAF_					0	0	0		nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7728271484375	2	508.7742	1015.53385	-0.72048	-0.00036656	-0.74813	-0.00038063	-1.4686	-0.00074719	508.7731644245086	22.033	0.80308	22.033	21.441	22.245	0					36	16	4	0	0	0	0.98754	1	739	739		47.657	10.498	1	488650			86366	18284	60128	60226	95928	95928					0.02670054068948957
VPGIPTQSAF	10	Unmodified	_VPGIPTQSAF_					0	0	0		nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	508.7742	1015.53385	-0.44577	-0.0002268	-0.76149	-0.00038743	-1.2073	-0.00061422	508.77288801929285	22.107	0.90166	22.032	21.369	22.27	-0.075296	0.00062424	-9.7678E-05	NaN	47.657	48	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424500			86367	18284	60128	60226							0.02670054068948957
VPGIPTQSAF	10	Unmodified	_VPGIPTQSAF_					0	0	0		nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	508.7742	1015.53385	-1.1448	-0.00058246	-0.5611	-0.00028548	-1.7059	-0.00086794	508.7731511673196	21.958	0.72628	22.029	21.684	22.411	0.071487	-0.0021345	0.00010623	NaN	47.657	42	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420300			86368	18284	60128	60226							0.02670054068948957
VPGKKAREEA	10	Unmodified	_VPGKKAREEA_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.32470703125	2	542.809105	1083.60366	-0.90225	-0.00048975	4.2303	0.0022962	3.328	0.0018065	542.811252693905	45.287	1.1206	45.287	44.97	46.09	0					75	32	4	0	0	0	0.03519	1	4420	4420		68.787	0	1	3001100			86369	4613	60129	60227	95929	95929					0.06519932737569434
VPGLGRARR	9	Unmodified	_VPGLGRARR_					0	0	0		ENST00000467928.2_2_10:102894001-102896667:+|nuORF	ENST00000467928.2_2_10:102894001-102896667:+|nuORF	ENST00000467928.2_2_10:102894001-102896667:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.795654296875	2	491.306867	980.599181	-0.40496	-0.00019896	2.539	0.0012474	2.134	0.0010485	491.3081700407022	48.462	0.51543	48.462	48.209	48.724	0					21	14	3	0	0	0	0.024487	1	4930	4930		24.203	11.244	1	245280			86370	14857	60130	60228	95930	95930					0.10810513105309383
VPGLPFPL	8	Unmodified	_VPGLPFPL_					0	0	0			REV__nc|ENSG00000106410|O60393-2|NOBOX	REV__nc|ENSG00000106410|O60393-2|NOBOX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.24041748046875	2	420.254914	838.495276	0.13635	5.7304E-05	0.14565	6.1212E-05	0.28201	0.00011852	420.2546913949394	37.283	0.65459	37.09	36.889	37.543	-0.193					27	16	3	0	0	0	0.027866	1	3016	3016		16.705	0	1	134560	+		86371	21618	60131	60229	95931	95931					0.06956793225083402
VPGNFHPTP	9	Unmodified	_VPGNFHPTP_					0	0	0		ENST00000527357.5_1_11:799959-801918:-|nuORF	ENST00000527357.5_1_11:799959-801918:-|nuORF	ENST00000527357.5_1_11:799959-801918:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.77630615234375	2	483.245609	964.476666	0.46573	0.00022506	3.5488	0.0017149	4.0145	0.00194	483.24726366976546	49.456	0.91363	49.456	49.072	49.986	0					34	24	2	0	0	0	0.024412	1	5147	5147		24.203	11.244	1	143780			86372	16149	60132	60230	95932	95932					-0.006993684167809988
VPGPVPLFF	9	Unmodified	_VPGPVPLFF_					0	0	0		ENST00000512712.2_1_4:2938262-2938409:+|nuORF	ENST00000512712.2_1_4:2938262-2938409:+|nuORF	ENST00000512712.2_1_4:2938262-2938409:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.764892578125	2	486.781296	971.54804	-0.33586	-0.00016349	1.9086	0.00092908	1.5728	0.00076559	486.78207900897553	19.884	0.18329	19.768	19.69	19.873	-0.11547					5	3	2	0	0	0	0.024541	1	453	453		21.702	4.3374	1	13743			86373	15859	60133	60231	95933	95933					0.061127512878897505
VPGPWPLGK	9	Unmodified	_VPGPWPLGK_					0	0	0		ENST00000566519.1_1_16:28738032-28738629:+|nuORF	ENST00000566519.1_1_16:28738032-28738629:+|nuORF	ENST00000566519.1_1_16:28738032-28738629:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7767639160156	2	475.776545	949.538538	0.91007	0.00043299	-0.67122	-0.00031935	0.23885	0.00011364	475.77602675902403	71.958	1.2625	71.67	71.074	72.337	-0.28858					91	32	4	0	0	0	0.75282	1	8691	8691		42.474	1.9018	1	4142500			86374	16944	60134	60232	95934	95934					0.06174983002370027
VPGRANSFASP	11	Unmodified	_VPGRANSFASP_					0	0	0		AJUBA|p.V264Cfs*42|1|0.21|ENSG00000129474|chr14:22981477-22981478|-/A|frameshift_variant;AJUBA|p.S230Ffs*76|1|0.92|ENSG00000129474|chr14:22981578-22981579|-/A|frameshift_variant;AJUBA|p.E253Gfs*53|1|0.84|ENSG00000129474|chr14:22981513-22981514|-/G|frameshift_variant	AJUBA|p.V264Cfs*42|1|0.21|ENSG00000129474|chr14:22981477-22981478|-/A|frameshift_variant	AJUBA|p.V264Cfs*42|1|0.21|ENSG00000129474|chr14:22981477-22981478|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.80859375	2	551.78563	1101.55671	-0.012153	-6.7057E-06	4.4823	0.0024733	4.4702	0.0024666	551.7887570293253	55.96	0.21221	55.744	55.633	55.845	-0.21607					6	5	2	0	0	0	0.024724	1	6040	6040		20.947	0	1	114820			86375	53	60135	60233	95935	95935					0.009990731864036206
VPGRSMQT	8	Unmodified	_VPGRSMQT_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	437.24310302734375	2	438.22382	874.433086	-0.32685	-0.00014323	-0.79061	-0.00034646	-1.1175	-0.0004897	438.2234707666573	30.554	0.62372	30.562	30.123	30.746	0.0086708					19	14	2	0	0	0	0.027866	1	1919	1919		27.882	14.107	1	34574	+		86376	21857	60136	60234	95936	95936					-0.009153011855573823
VPGRSMQT	8	Unmodified	_VPGRSMQT_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	438.22382	874.433086	-0.94665	-0.00041484	-3.9088	-0.0017129	-4.8554	-0.0021278	438.2207904083594	30.405	0.33394	30.405	30.258	30.592	0	-0.078673	-0.0015318	NaN	20.947	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34327	+		86377	21857	60136	60234							-0.009153011855573823
VPGRSPGLP	9	Unmodified	_VPGRSPGLP_					0	0	0		ENSG00000165478|ENST00000298251|HEPACAM	ENSG00000165478|ENST00000298251|HEPACAM	ENSG00000165478|ENST00000298251|HEPACAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	440.2540283203125	2	440.255977	878.497401	-1.1798	-0.00051942	1.2145	0.0005347	0.034703	1.5278E-05	440.25635253067543	37.843	0.67599	37.843	37.523	38.199	0					52	19	4	0	0	0	0.29104	1	3147	3147		76.847	0.072494	1	2031800			86378	7417	60137	60235	95937	95937					0.05329221962904285
VPGRSRPQ	8	Unmodified	_VPGRSRPQ_					0	0	0		MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.75677490234375	2	448.756675	895.498798	1.8753	0.00084153	-1.9163	-0.00085995	-0.041034	-1.8414E-05	448.7557087788375	18.884	1.1251	18.884	18.431	19.556	0					50	22	4	0	0	0	0.97924	1	347	347		40.573	4.9543	1	742420			86379	17974	60138	60236	95938	95938					0.046868560516600155
VPGRSRPQ	8	Unmodified	_VPGRSRPQ_					0	0	0		MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	MESP2|p.V240Sfs*241|1|0.42|ENSG00000188095|chr15:89777070-89777070|G/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	448.756675	895.498798	0.18779	8.4271E-05	-0.15424	-6.9217E-05	0.033545	1.5053E-05	448.75645610556217	19.099	0.88495	18.98	18.61	19.495	-0.11872	0.048147	0.0009549	NaN	40.573	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202450			86380	17974	60138	60236							0.046868560516600155
VPGRTANL	8	Unmodified	_VPGRTANL_					0	0	0		ENST00000335195.10_1_7:44116154-44116184:-|nuORF	ENST00000335195.10_1_7:44116154-44116184:-|nuORF	ENST00000335195.10_1_7:44116154-44116184:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.2403259277344	2	414.240327	826.466101	-0.99539	-0.00041233	0.86922	0.00036007	-0.12617	-5.2265E-05	414.24060861540454	29.867	0.93482	29.945	29.489	30.424	0.078344					64	22	4	0	0	0	0.93274	1	1828	1828		47.916	0	1	4467400			86381	12390	60139	60237	95939	95939					0.045926489288035555
VPGSLPIK	8	Unmodified	_VPGSLPIK_					0	0	0			REV__ENSG00000097046|ENST00000234626|CDC7	REV__ENSG00000097046|ENST00000234626|CDC7	MSMS	OPSCC_40_ClassI_Rep-3	6	405.75897216796875	2	405.757821	809.501089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.11	1	113.97	113.47	114.47	-0.14429								0	0	0	1.242	1	13705	13705		9.4706	0	1		+		86382	20993	60140	60238	95940	95940					0.08871891736760062
VPGSMYREN	9	Unmodified	_VPGSMYREN_					0	0	0		ENST00000563365.1_2_2:55509501-55509765:+|nuORF	ENST00000563365.1_2_2:55509501-55509765:+|nuORF	ENST00000563365.1_2_2:55509501-55509765:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.7466430664062	2	526.745116	1051.47568	-0.1064	-5.6043E-05	2.5286	0.0013319	2.4222	0.0012759	526.7464690662675	31.159	1.2612	31.228	30.87	32.131	0.06896					95	30	5	0	0	0	0.33245	1	2022	2022		71.296	0	1	8479200			86383	16867	60141	60239	95941	95941					-0.04799950847973378
VPGTRRPN	8	Unmodified	_VPGTRRPN_					0	0	0			REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.7567443847656	2	448.756675	895.498798	1.8753	0.00084153	-1.9163	-0.00085995	-0.041034	-1.8414E-05	448.7557087788375	18.884	1.1251	18.884	18.431	19.556	0					50	22	4	0	0	0	1.0239	1	325	325		33.516	0	1	742420	+		86384	30785	60142	60240	95942	95942					0.046868560516600155
VPGVQTWY	8	Unmodified	_VPGVQTWY_					0	0	0			REV__ENST00000380336.5_1_X:15715706-15715868:+|nuORF	REV__ENST00000380336.5_1_X:15715706-15715868:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2703552246094	2	475.242535	948.470518	0.23054	0.00010956	-3.7198	-0.0017678	-3.4892	-0.0016582	475.24048196527275	25.186	0.9137	25.186	24.697	25.611	0					31	21	3	0	0	0	0.027866	1	1123	1123		15.636	0	1	248990	+		86385	31475	60143	60241	95943	95943					-0.005778866482955891
VPGVTSTYR	9	Unmodified	_VPGVTSTYR_					0	0	0		ENSG00000241852|ENST00000289989|C8orf58;nc|nan|Q8NAV2-2|C8orf58	ENSG00000241852|ENST00000289989|C8orf58	ENSG00000241852|ENST00000289989|C8orf58	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	490.2628173828125	2	490.263999	978.513445	-0.47143	-0.00023113	-2.8807	-0.0014123	-3.3521	-0.0016434	490.2634421104546	104.68	0.53815	104.55	104.23	104.77	-0.12928					24	13	2	0	0	0	0.92825	1	13040	13040		30.504	0	1	124370			86386	10786	60144	60242	95944	95944					0.023328834091330464
VPGYVIPDP	9	Unmodified	_VPGYVIPDP_					0	0	0			REV__ENST00000336498.7_1_4:148968187-148984334:+|nuORF	REV__ENST00000336498.7_1_4:148968187-148984334:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7605895996094	2	478.758018	955.501483	-0.0057592	-2.7572E-06	1.9755	0.00094579	1.9698	0.00094304	478.7598129096646	33.667	1.8776	33.724	32.647	34.524	0.056572					112	48	5	0	0	0	0.44472	1	2410	2410		62.978	2.6845	1	20332000	+		86387	30547	60145	60243	95945	95945					0.02195266665944473
VPHAVWTF	8	Unmodified	_VPHAVWTF_					0	0	0		PRDM7|p.P426T|1|0.14|ENSG00000126856|chr16:90058492-90058492|G/T|missense_variant	PRDM7|p.P426T|1|0.14|ENSG00000126856|chr16:90058492-90058492|G/T|missense_variant	PRDM7|p.P426T|1|0.14|ENSG00000126856|chr16:90058492-90058492|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.7605285644531	2	478.75307	955.491587	-0.64302	-0.00030785	1.0105	0.00048379	0.36751	0.00017594	478.7534082776166	34.409	1.5357	34.46	34.005	35.541	0.050255					82	39	3	0	0	0	0.027866	1	2448	2448		54.765	11.139	1	635720			86388	18991	60146	60244	95946	95946					0.012061234512202645
VPHLYRDG	8	Unmodified	_VPHLYRDG_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197129317-197129915|469|13.61|0.58|4.55|-|2|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.7545166015625	2	478.751059	955.487565	-0.35702	-0.00017092	3.2301	0.0015464	2.8731	0.0013755	478.75263780541945	33.354	0.94904	33.361	32.738	33.687	0.0066223					82	25	4	0	0	0	0.75307	1	2425	2425		62.978	5.5258	1	13074000			86389	1335	60147	60245	95947	95947					0.008040339575245525
VPHLYRDG	8	Unmodified	_VPHLYRDG_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;chr1:197129317-197129915|469|13.61|0.58|4.55|-|2|ASPM,ASPM|1	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	478.7612609863281	2	478.751059	955.487565	-0.091965	-4.4028E-05	4.2429	0.0020313	4.1509	0.0019873	478.7530975623022	34.233	1.3328	34.228	34.071	35.404	-0.0045624					52	34	2	0	0	0	0.027866	1	2501	2501		42.474	0	1	676720			86390	1335	60147	60245	95948	95948					0.008040339575245525
VPHRSSGHSL	10	Unmodified	_VPHRSSGHSL_					0	0	0		ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.783935546875	2	538.783422	1075.55229	0.85028	0.00045812	-0.99432	-0.00053573	-0.14404	-7.7609E-05	538.7827472505589	19.075	0.58981	19.075	18.873	19.463	0					26	11	4	0	0	0	1.0616	1	365	365		37.812	3.639	1	302060			86391	7010	60148	60246	95949	95949					0.017536087635335207
VPHRSSGHSL	10	Unmodified	_VPHRSSGHSL_					0	0	0		ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.783203125	2	538.783422	1075.55229	2.0999	0.0011314	-1.9805	-0.001067	0.11941	6.4337E-05	538.7821524274455	19.299	0.59307	19.365	19.093	19.687	0.066195					30	11	4	0	0	0	1.0616	1	365	365		37.812	1.3648	1	252890			86392	7010	60148	60246	95950	95950					0.017536087635335207
VPIDLQKVD	9	Unmodified	_VPIDLQKVD_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.8101806640625	2	513.795132	1025.57571	-1.5694	-0.00080635	1.8173	0.00093372	0.24789	0.00012737	513.7956675587762	37.884	0.61106	37.884	37.523	38.134	0					23	17	2	0	0	0	0.024405	1	3175	3175		44.117	0	1	198870			86393	10092	60149	60247	95951	95951					0.06394609757489889
VPIDLQKVD	9	Unmodified	_VPIDLQKVD_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	513.795132	1025.57571	-1.1047	-0.00056757	1.5568	0.00079989	0.45217	0.00023232	514.2978666070647	37.77	0.7033	37.688	37.179	37.883	-0.082516	-0.17271	-0.00036082	NaN	60.972	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156500			86394	10092	60149	60247							0.06394609757489889
VPIGHQTLLI	10	Unmodified	_VPIGHQTLLI_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.316650390625	2	545.834591	1089.65463	-0.14956	-8.1635E-05	-1.2665	-0.00069132	-1.4161	-0.00077295	545.834023327947	89.219	0.21035	89.197	89.115	89.326	-0.021645					5	4	2	0	0	0	0.03519	1	11241	11241		26.693	5.746	1	41334	+		86395	21046	60150	60248	95952	95952					0.11338881782421595
VPILLILVT	9	Unmodified	_VPILLILVT_					0	0	0		ENSG00000178789|ENST00000392621|CD300LB	ENSG00000178789|ENST00000392621|CD300LB	ENSG00000178789|ENST00000392621|CD300LB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.2577209472656	2	490.841354	979.668155	-0.78862	-0.00038709	0.43638	0.0002142	-0.35223	-0.00017289	490.84144081748406	105.78	0.3443	105.65	105.47	105.81	-0.1328					26	14	3	0	0	0	0.024541	1	13159	13159		25.45	7.1258	1	107150			86396	8837	60151	60249	95953	95953					0.17750739561665796
VPIPIVTL	8	Unmodified	_VPIPIVTL_					0	0	0			REV__ENSG00000070444|ENST00000174618|MNT	REV__ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.271240234375	2	426.283672	850.552791	-0.23827	-0.00010157	-0.76779	-0.0003273	-1.0061	-0.00042887	426.2825600334218	39.271	0.54831	39.271	39.112	39.661	0					22	15	2	0	0	0	0.027866	1	3361	3361		13.775	8.6884	1	146090	+		86397	20425	60152	60250	95954	95954					0.12153635430661325
VPIPKKLKP	9	Unmodified	_VPIPKKLKP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.31011962890625	2	510.35242	1018.69029	0.13892	7.0899E-05	-0.24712	-0.00012612	-0.1082	-5.5218E-05	510.3509729906172	77.121	0.33974	77.121	76.955	77.295	0					9	7	2	0	0	0	0.024541	1	9536	9536		11.511	0	1	86021			86398	6479	60153	60251	95955	95955					0.18168964030064672
VPIRLPRTK	9	Unmodified	_VPIRLPRTK_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.2745971679688	2	540.356025	1078.6975	-1.6233	-0.00087716	1.479	0.00079916	-0.14435	-7.8E-05	540.3566614094182	55.566	0.49791	55.351	55.104	55.602	-0.21551					32	13	3	0	0	0	0.024541	1	5940	5940		15.642	7.4105	1	458340			86399	3088	60154	60252	95956	95956					0.16129696630491708
VPIRTHGSQ	9	Unmodified	_VPIRTHGSQ_					0	0	0			REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	REV__nc|ENSG00000168763|Q8NE01-2|CNNM3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.7745056152344	2	497.775065	993.535577	0.38742	0.00019285	-0.58383	-0.00029062	-0.19641	-9.7768E-05	497.7747674784176	100.81	1.1712	100.67	100.46	101.63	-0.13364					54	28	3	0	0	0	0.4752	1	12521	12521		60.972	0	1	642740	+		86400	26289	60155	60253	95957	95957					0.038551078775640235
VPIRTVPS	8	Unmodified	_VPIRTVPS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7801513671875	2	434.766178	867.517802	-0.64129	-0.00027881	3.5707	0.0015524	2.9294	0.0012736	434.7674808264127	39.335	0.70728	39.237	38.807	39.514	-0.098755					22	19	2	0	0	0	0.027866	1	3323	3323		30.504	5.0535	1	89525			86401	9025	60156	60254	95958	95958					0.07874392622704818
VPITKSSIN	9	Unmodified	_VPITKSSIN_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	478.7926330566406	2	479.782025	957.549496	0.19734	9.4681E-05	-0.09444	-4.5311E-05	0.1029	4.937E-05	479.7817679600406	64.092	0.56053	63.864	63.662	64.223	-0.22773					29	13	3	0	0	0	0.024506	1	7275	7275		16.473	4.2663	1	628970	+		86402	26779	60157	60255	95959	95959					0.0690234058599799
VPIVRGML	8	Unmodified	_VPIVRGML_					0	0	0			REV__ENST00000547548.1_1_12:32866256-32875568:+|nuORF	REV__ENST00000547548.1_1_12:32866256-32875568:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.3026123046875	2	442.772948	883.531344	1.6171	0.00071602	-1.6376	-0.00072508	-0.020468	-9.0625E-06	442.77212098663034	63.433	0.6046	63.487	63.198	63.803	0.054104					25	16	2	0	0	0	0.027866	1	7358	7358		26.796	22.48	1	470740	+		86403	20801	60158	60256	95960	95960					0.08491927130296517
VPIVVEPAR	9	Unmodified	_VPIVVEPAR_					0	0	0		ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	ENSG00000105613|ENST00000251472|MAST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7815856933594	2	490.300384	978.586216	-0.70487	-0.0003456	-0.15375	-7.5381E-05	-0.85861	-0.00042098	490.30024210987955	62.819	0.7415	62.819	62.489	63.23	0					32	18	2	0	0	0	0.024412	1	7284	7284		24.203	0	1	2536000			86404	2698	60159	60257	95961	95961					0.09606637202557522
VPIYFGSNY	9	Unmodified	_VPIYFGSNY_					0	0	0		ENSG00000168959|ENST00000305447|GRM5;nc|ENSG00000168959|P41594-2|GRM5;nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1	ENSG00000168959|ENST00000305447|GRM5;nc|ENSG00000152822|Q13255-2|GRM1	ENSG00000168959|ENST00000305447|GRM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7794189453125	2	530.260925	1058.5073	-0.30015	-0.00015916	-2.3341	-0.0012377	-2.6343	-0.0013969	530.2592997855538	63.899	0.39109	63.672	63.475	63.866	-0.22773					17	9	3	0	0	0	0.024405	1	7234	7234		20.947	0	1	264820			86405	7886;6302	60160	60258	95962	95962					-0.019616348223735258
VPIYFGSNY	9	Unmodified	_VPIYFGSNY_					0	0	0		ENSG00000168959|ENST00000305447|GRM5;nc|ENSG00000168959|P41594-2|GRM5;nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1	ENSG00000168959|ENST00000305447|GRM5;nc|ENSG00000152822|Q13255-2|GRM1	ENSG00000168959|ENST00000305447|GRM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7792358398438	2	530.260925	1058.5073	-0.46046	-0.00024417	-1.7524	-0.00092921	-2.2128	-0.0011734	530.259951264611	63.929	0.50771	63.736	63.493	64	-0.19243					17	12	2	0	0	0	0.02435	1	7243	7243		42.396	8.2236	1	372800			86406	7886;6302	60160	60258	95963	95963					-0.019616348223735258
VPKERAVR	8	Unmodified	_VPKERAVR_					0	0	0			REV__ENSG00000140006|ENST00000620954|WDR89	REV__ENSG00000140006|ENST00000620954|WDR89	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77215576171875	2	477.795801	953.577048	-0.77754	-0.00037151	3.3351	0.0015935	2.5576	0.001222	477.7972462665888	35.879	0.17535	35.836	35.688	35.864	-0.042454					7	4	2	0	0	0	0.027866	1	2774	2774		73.975	20.623	1	63125	+		86407	23982	60161	60259	95964	95964					0.09840288636894456
VPKERTQP	8	Unmodified	_VPKERTQP_					0	0	0			REV__ENSG00000173145|ENST00000371361|NOC3L	REV__ENSG00000173145|ENST00000371361|NOC3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.77203369140625	2	477.771991	953.529429	-0.25948	-0.00012397	-0.026067	-1.2454E-05	-0.28555	-0.00013643	477.772021227986	36.012	1.0432	36.012	35.57	36.613	0					73	28	4	0	0	0	0.33369	1	2839	2839		106.42	4.8145	1	13201000	+		86408	26743	60162	60260	95965	95965					0.05080589646047429
VPKERTQP	8	Unmodified	_VPKERTQP_					0	0	0			REV__ENSG00000173145|ENST00000371361|NOC3L	REV__ENSG00000173145|ENST00000371361|NOC3L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.77166748046875	2	477.771991	953.529429	-0.3491	-0.00016679	-0.017623	-8.4197E-06	-0.36673	-0.00017521	477.7720598711402	35.906	1.6269	35.95	35.497	37.123	0.04406					94	43	5	0	0	0	0.42327	1	2780	2780		94.006	3.6366	1	12415000	+		86409	26743	60162	60260	95966	95966					0.05080589646047429
VPKFLFSAP	9	Unmodified	_VPKFLFSAP_					0	0	0		ENST00000368847.4_1_6:111580577-111580748:+|nuORF	ENST00000368847.4_1_6:111580577-111580748:+|nuORF	ENST00000368847.4_1_6:111580577-111580748:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2748718261719	2	503.292028	1004.5695	-0.3305	-0.00016634	-4.2547	-0.0021414	-4.5852	-0.0023077	503.29008767569786	56.478	0.60615	56.478	56.139	56.745	0					36	16	3	0	0	0	0.024466	1	6333	6333		33.516	3.0119	1	1868000			86410	12906	60163	60261	95967	95967					0.06740136316614098
VPKGPPAAP	9	Unmodified	_VPKGPPAAP_					0	0	0			REV__ENST00000263269.3_1_19:48947279-48947732:+|nuORF	REV__ENST00000263269.3_1_19:48947279-48947732:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-1	4	417.24786376953125	2	417.247621	832.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.42	1	105.29	104.79	105.79	-0.12444								0	0	0	0.64601	1	13124	13124		31.955	2.1133	1		+		86411	29684	60164	60262	95968	95968					0.05774721076943479
VPKIGLID	8	Unmodified	_VPKIGLID_					0	0	0			REV__nc|ENSG00000113643|P54136-2|RARS1	REV__nc|ENSG00000113643|P54136-2|RARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7580871582031	2	427.770929	853.527304	0.32636	0.00013961	2.1302	0.00091124	2.4566	0.0010508	427.7718821139648	41.26	0.52189	41.283	41.076	41.597	0.023006					21	14	2	0	0	0	0.027866	1	3671	3671		30.504	12.179	1	202690	+		86412	22079	60165	60263	95969	95969					0.09468160908227219
VPKKPKKV	8	Unmodified	_VPKKPKKV_					0	0	0		GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.2868957519531	2	462.323663	922.632772	0.73037	0.00033767	0.1077	4.9791E-05	0.83806	0.00038746	462.32259513156697	52.598	0.33831	52.69	52.526	52.864	0.091938					13	8	2	0	0	0	0.027866	1	5566	5566		8.2313	0	1	70718			86413	17668	60166	60264	95970	95970					0.16836121824508155
VPKKPKKV	8	Unmodified	_VPKKPKKV_					0	0	0		GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	462.323663	922.632772	-0.3219	-0.00014882	-7.3065	-0.003378	-7.6284	-0.0035268	462.3199967846069	52.73	0.23204	52.73	52.595	52.827	0	0.027996	-0.006209	NaN	8.2313	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95416			86414	17668	60166	60264							0.16836121824508155
VPKKPKKV	8	Unmodified	_VPKKPKKV_					0	0	0		GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	GABRA1|p.E352K|1|0.29|ENSG00000022355|chr5:161895863-161895863|G/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	462.323663	922.632772	0.13698	6.333E-05	-4.9394	-0.0022836	-4.8025	-0.0022203	462.3216661506667	52.833	0.2667	52.686	52.569	52.835	-0.14723	-0.015949	-0.0040203	NaN	8.2313	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69044			86415	17668	60166	60264							0.16836121824508155
VPKKPKLCEQL	11	Unmodified	_VPKKPKLCEQL_					0	0	0			REV__nc|ENSG00000124226|Q9Y508-2|RNF114	REV__nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	641.8821411132812	2	641.881216	1281.74788	0.55581	0.00035677	1.3353	0.00085713	1.8912	0.0012139	641.8819811934882	95.796	3.9923	95.796	94.875	98.867	0					274	92	5	0	0	0	1.0075	2	12126	12126;12161		35.152	5.982	1	3344500	+		86416	22753	60167	60265	95971;95972	95971					0.11827438173349947
VPKKPKLCEQL	11	Unmodified	_VPKKPKLCEQL_					0	0	0			REV__nc|ENSG00000124226|Q9Y508-2|RNF114	REV__nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8821411132812	2	641.881216	1281.74788	0.89146	0.00057221	0.96967	0.00062241	1.8611	0.0011946	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	1.0075	1	12056	12056		35.152	0	1	2810000	+		86417	22753	60167	60265	95973	95973					0.11827438173349947
VPKKPKLCEQL	11	Unmodified	_VPKKPKLCEQL_					0	0	0			REV__nc|ENSG00000124226|Q9Y508-2|RNF114	REV__nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8826904296875	2	641.881216	1281.74788	-0.57437	-0.00036868	2.3388	0.0015012	1.7644	0.0011326	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	1.0075	1	11560	11560		35.152	1.2304	1	1351900	+		86418	22753	60167	60265	95974	95974					0.11827438173349947
VPKKRSKRDK	10	Unmodified	_VPKKRSKRDK_					0	0	0			REV__ENST00000293880.9_1_11:57094898-57095944:-|nuORF	REV__ENST00000293880.9_1_11:57094898-57095944:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	621.3944091796875	2	621.39367	1240.77279	-0.62674	-0.00038945	-0.43857	-0.00027252	-1.0653	-0.00066197	621.3932608145468	103.28	0.71376	103.28	102.92	103.63	0					43	16	4	0	0	0	1.1266	1	13269	13269		29.17	1.0886	1	556010	+		86419	24658	60168	60266	95975	95975					0.1620325409094221
VPKLLFQGF	9	Unmodified	_VPKLLFQGF_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2371215820312	2	524.813128	1047.6117	-1.0096	-0.00052984	-3.9621	-0.0020794	-4.9717	-0.0026092	524.8110203127369	43.997	0.49	43.753	43.52	44.01	-0.2444					21	12	2	0	0	0	0.024541	1	4103	4103		7.6903	0	1	147020	+		86420	25925	60169	60267	95976	95976					0.08980111724986273
VPKPPRAR	8	Unmodified	_VPKPPRAR_					0	0	0			REV__ENST00000607241.1_1_2:9696254-9696722:+|nuORF	REV__ENST00000607241.1_1_2:9696254-9696722:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	460.7510681152344	2	460.793061	919.571569	-0.20524	-9.4572E-05	0.78276	0.00036069	0.57752	0.00026612	460.7932217412282	34.111	0.20605	34.162	34.047	34.253	0.050255					6	4	2	0	0	0	0.027866	1	2450	2450		12.959	5.2689	1	48311	+		86421	35947	60170	60268	95977	95977					0.10856609845075127
VPKPTAAGTL	10	Unmodified	_VPKPTAAGTL_					0	0	0			REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7723693847656	2	477.784567	953.554582	-0.77725	-0.00037136	1.3764	0.00065764	0.59918	0.00028628	477.785058673621	35.855	0.17535	35.812	35.688	35.864	-0.042454					7	4	2	0	0	0	0.03519	1	2762	2762		62.107	0	1	103150	+		86422	35482	60171	60269	95978	95978					0.07594644448624877
VPKQKRSI	8	Unmodified	_VPKQKRSI_					0	0	0		CDH13|p.R135K|1|0.46|ENSG00000140945|chr16:83125422-83125422|G/A|missense_variant	CDH13|p.R135K|1|0.46|ENSG00000140945|chr16:83125422-83125422|G/A|missense_variant	CDH13|p.R135K|1|0.46|ENSG00000140945|chr16:83125422-83125422|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.30560302734375	2	478.306001	954.597449	0.25372	0.00012136	-0.099464	-4.7574E-05	0.15426	7.3782E-05	478.3057924759216	18.689	1.0883	18.485	17.965	19.053	-0.20371					36	21	3	0	0	0	1.0516	1	337	337		29.15	1.2673	1	268400			86423	239	60172	60270	95979	95979					0.11833459296701676
VPKQTSSY	8	Unmodified	_VPKQTSSY_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.2370910644531	2	455.23745	908.460347	0.3198	0.00014559	-1.0462	-0.00047625	-0.72635	-0.00033066	455.2368857873741	103.02	0.69856	102.85	102.5	103.2	-0.17034					36	16	3	0	0	0	1.0338	1	12804	12804		31.955	0	1	1771700			86424	1582	60173	60271	95980	95980					0.0024550562648073537
VPKRHKALE	9	Unmodified	_VPKRHKALE_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.3277587890625	2	539.330008	1076.64546	-0.4222	-0.00022771	1.9446	0.0010488	1.5224	0.00082108	539.33089429204	106.79	0.32163	106.79	106.63	106.95	-0.003479					16	11	2	0	0	0	0.92825	1	13668	13668		30.504	1.3541	1	119900			86425	6234	60174	60272	95981	95981					0.11020533216742479
VPKRHKALE	9	Unmodified	_VPKRHKALE_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.330008	1076.64546	-1.5532	-0.00083768	3.6935	0.001992	2.1403	0.0011543	539.3319759072571	106.99	0.20139	106.85	106.74	106.94	-0.1346	0.0098852	0.0016263	NaN	30.504	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20508			86426	6234	60174	60272							0.11020533216742479
VPKTGEGFID	10	Unmodified	_VPKTGEGFID_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF;ENST00000477970.1_1_1:44086064-44087671:+|nuORF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3041381835938	2	531.776939	1061.53933	0.14908	7.928E-05	-3.9593	-0.0021055	-3.8103	-0.0020262	531.7732906212904	19.4	0.24704	19.239	19.134	19.381	-0.16079					5	4	2	0	0	0	0.03519	1	415	415		25.574	0	1	7908.5			86427	5598	60175	60273	95982	95982					0.011017328607522359
VPKTTGEGTSL	11	Unmodified	_VPKTTGEGTSL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.2921752929688	2	545.292953	1088.57135	-1.0969	-0.00059812	0.56663	0.00030898	-0.53025	-0.00028914	545.293197433478	34.886	0.90191	34.886	34.59	35.492	0					67	23	5	0	0	0	0.22465	2	2639	2639;2655		96.665	22.69	1	4376400			86428	1574	60176	60274	95983;95984	95983					0.030611005439368455
VPKTTGEGTSL	11	Unmodified	_VPKTTGEGTSL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.2924194335938	2	545.292953	1088.57135	-1.2184	-0.00066439	0.51475	0.00028069	-0.70366	-0.0003837	545.2931924489441	34.713	1.2323	34.692	34.398	35.63	-0.020515					76	31	5	0	0	0	0.064447	2	2605	2593;2605		117.53	61.092	1	4080300			86429	1574	60176	60274	95985;95986	95986					0.030611005439368455
VPKTTGEGTSL	11	Unmodified	_VPKTTGEGTSL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.2929077148438	2	545.292953	1088.57135	-1.3907	-0.00075836	0.83533	0.0004555	-0.55541	-0.00030286	545.293357299057	34.755	1.2228	34.805	34.441	35.664	0.050255					80	31	5	0	0	0	0.064447	2	2557	2557;2569		117.53	40.679	1	3754500			86430	1574	60176	60274	95987;95988	95987					0.030611005439368455
VPKVENVK	8	Unmodified	_VPKVENVK_					0	0	0		nc|ENSG00000102043|Q96EF0-2|MTMR8;ENSG00000102043|ENST00000374852|MTMR8	nc|ENSG00000102043|Q96EF0-2|MTMR8	nc|ENSG00000102043|Q96EF0-2|MTMR8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	456.7784423828125	2	456.779285	911.544017	0.0085274	3.8951E-06	0.28412	0.00012978	0.29265	0.00013368	456.7791846846295	43.043	1.0554	42.904	42.484	43.54	-0.13929					54	28	4	0	0	0	0.30694	1	3986	3986		110.12	22.423	1	3327200			86431	2373	60177	60275	95989	95989					0.08470661794183343
VPKVVGSAV	9	Unmodified	_VPKVVGSAV_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684292-39684520:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.26898193359375	2	428.268553	854.522553	-0.021586	-9.2447E-06	0.31571	0.00013521	0.29413	0.00012596	428.2685610173308	40.756	0.91402	40.756	40.137	41.051	0					51	25	3	0	0	0	0.31037	2	3611	3611;3622		74.255	9.3127	1	3698900			86432	10138	60178	60276	95990;95991	95990					0.08947276765479728
VPKVVGSAV	9	Unmodified	_VPKVVGSAV_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684292-39684520:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.26971435546875	2	428.268553	854.522553	0.64315	0.00027544	-0.45853	-0.00019637	0.18462	7.9068E-05	428.2682014216666	40.935	0.64445	40.812	40.441	41.086	-0.12317					44	17	4	0	0	0	0.42604	2	3635	3622;3635		64.207	8.7031	1	3379500			86433	10138	60178	60276	95992;95993	95993					0.08947276765479728
VPKVVGSAV	9	Unmodified	_VPKVVGSAV_					0	0	0		nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2;ENST00000604759.1_1_14:39684292-39684520:+|nuORF	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.26898193359375	2	428.268553	854.522553	0.047683	2.0421E-05	0.24375	0.00010439	0.29143	0.00012481	428.2685018199434	40.927	0.6567	40.95	40.562	41.219	0.023003					52	18	4	0	0	0	0.31037	1	3583	3583		74.255	10.949	1	3675200			86434	10138	60178	60276	95994	95994					0.08947276765479728
VPLAAPIKV	9	Unmodified	_VPLAAPIKV_					0	0	0			REV__ENSG00000145715|ENST00000274376|RASA1	REV__ENSG00000145715|ENST00000274376|RASA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.3023986816406	2	454.302396	906.590239	-0.40778	-0.00018525	0.48158	0.00021878	0.073808	3.3531E-05	454.30249065456167	60.652	1.1657	60.439	60	61.166	-0.21339					78	30	4	0	0	0	0.44472	1	6965	6965		62.978	8.2138	1	5020400	+		86435	24425	60179	60277	95995	95995					0.13320726696281326
VPLAAVIKPL	10	Unmodified	_VPLAAVIKPL_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7897644042969	2	510.844428	1019.6743	-0.32563	-0.00016635	-2.0431	-0.0010437	-2.3687	-0.00121	510.8444975883087	85.64	0.45219	85.583	85.397	85.849	-0.05761					18	10	3	0	0	0	0.03519	1	10695	10695		12.207	0	1	225480			86436	8695	60180	60278	95996	95996					0.16525257793159653
VPLAAVSATVV	11	Unmodified	_VPLAAVSATVV_					0	0	0			REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	REV__nc|ENSG00000007255|O75865-2|TRAPPC6A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7902221679688	2	513.813325	1025.6121	-0.61275	-0.00031484	-0.055329	-2.8429E-05	-0.66808	-0.00034327	513.8127837423162	20.039	0.19771	20.039	19.929	20.127	0					5	3	2	0	0	0	0.024763	1	485	485		21.96	13.729	1	8089.1	+		86437	19857	60181	60279	95997	95997					0.10031486654179389
VPLALLLLSL	10	Unmodified	_VPLALLLLSL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.7946166992188	2	526.359911	1050.70527	-1.2768	-0.00067203	3.4815	0.0018325	2.2047	0.0011605	526.3615816641889	34.714	1.5774	34.714	34.552	36.129	0					109	41	4	0	0	0	0.03519	1	2838	2838		18.324	0	1	956930	+		86438	20977	60182	60280	95998	95998					0.18194411107424457
VPLALLLPLF	10	Unmodified	_VPLALLLPLF_					0	0	0		ENST00000215838.7_1_22:31003025-31003232:+|nuORF	ENST00000215838.7_1_22:31003025-31003232:+|nuORF	ENST00000215838.7_1_22:31003025-31003232:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.311279296875	2	548.362453	1094.71035	-0.96019	-0.00052653	-2.5563	-0.0014018	-3.5165	-0.0019283	548.3602929037694	56.31	0.17832	56.154	56.031	56.21	-0.15601					5	4	2	0	0	0	0.03519	1	6235	6235		12.959	4.7279	1	44305			86439	11146	60183	60281	95999	95999					0.16678714970043984
VPLALRPLVL	10	Unmodified	_VPLALRPLVL_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1	REV__ENSG00000008710|ENST00000262304|PKD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.8345336914062	2	545.870977	1089.7274	-0.74918	-0.00040895	-3.1672	-0.0017289	-3.9164	-0.0021378	545.869717414237	48.794	0.32972	48.612	48.408	48.738	-0.18206					10	8	2	0	0	0	0.03519	1	4864	4864		18.324	12.403	1	107660	+		86440	19884	60184	60282	96000	96000					0.18612635575823333
VPLEARSSDE	10	Unmodified	_VPLEARSSDE_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8091430664062	2	551.772385	1101.53022	-0.9944	-0.00054868	-0.54818	-0.00030247	-1.5426	-0.00085115	551.7721188713876	55.723	0.62061	55.567	55.312	55.933	-0.15655					26	16	2	0	0	0	0.03519	1	5993	5993		42.396	15.703	1	241990	+		86441	22911	60185	60283	96001	96001					-0.016486604955616713
VPLEGPMLEA	10	Unmodified	_VPLEGPMLEA_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2486572265625	2	528.275718	1054.53688	-0.52099	-0.00027523	2.496	0.0013186	1.975	0.0010433	528.2770105565585	33.353	0.50986	33.153	32.855	33.365	-0.20019					21	12	2	0	0	0	0.03519	1	2323	2323		15.642	0	1	266600			86442	876	60186	60284	96002	96002					0.011795611314482812
VPLEGPMLEA	10	Unmodified	_VPLEGPMLEA_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	528.275718	1054.53688	-1.2226	-0.00064586	3.8562	0.0020371	2.6336	0.0013913	528.7795174522486	33.373	0.56391	33.373	33.213	33.777	0	0.13983	0.0012993	NaN	27.882	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136700			86443	876	60186	60284							0.011795611314482812
VPLEGPMLEA	10	Unmodified	_VPLEGPMLEA_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	528.275718	1054.53688	-0.98448	-0.00052008	2.9386	0.0015524	1.9541	0.0010323	528.7791131838017	33.294	0.49123	33.3	33.043	33.534	0.0066261	0.067056	0.00032978	NaN	27.882	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118830			86444	876	60186	60284							0.011795611314482812
VPLEGPMLEA	10	Unmodified	_VPLEGPMLEA_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	528.275718	1054.53688	-0.36064	-0.00019052	1.1617	0.00061371	0.80108	0.00042319	528.2768560814872	33.427	0.59821	33.196	32.956	33.554	-0.23107	-0.037415	-0.0015476	NaN	27.882	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250600			86445	876	60186	60284							0.011795611314482812
VPLEGPMLEA	10	Unmodified	_VPLEGPMLEA_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	528.275718	1054.53688	-0.84695	-0.00044743	2.6426	0.001396	1.7957	0.00094861	528.2771055379529	33.31	0.52079	33.144	32.958	33.479	-0.16565	-0.089059	1.7082E-05	NaN	27.882	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221750			86446	876	60186	60284							0.011795611314482812
VPLEKETL	8	Unmodified	_VPLEKETL_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.7702331542969	2	464.771126	927.527698	-0.57995	-0.00026955	-0.22506	-0.0001046	-0.80502	-0.00037415	464.77082518996764	43.904	0.6612	43.799	43.507	44.168	-0.10468					49	17	4	0	0	0	0.2677	3	4061	4052;4061;4075		125.81	24.602	1	3936000			86447	4640	60187	60285	96003;96004;96005	96004					0.061035358374169846
VPLEKETL	8	Unmodified	_VPLEKETL_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	464.7699279785156	2	464.771126	927.527698	-0.98376	-0.00045722	0.06768	3.1456E-05	-0.91608	-0.00042577	464.7711304052335	44.081	0.66619	43.837	43.52	44.186	-0.2444					52	17	4	0	0	0	0.2677	3	4072	4063;4072;4084		125.81	13.756	1	3746900			86448	4640	60187	60285	96006;96007;96008	96007					0.061035358374169846
VPLEKETL	8	Unmodified	_VPLEKETL_					0	0	0		NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant;ENSG00000132688|ENST00000368223|NES	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	NES|p.V1467Pfs*6|1|0.2|ENSG00000132688|chr1:156669795-156669798|CACT/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.77081298828125	2	464.771126	927.527698	-1.0745	-0.00049941	0.083484	3.8801E-05	-0.99103	-0.0004606	464.7711263977959	44.041	0.72247	43.822	43.562	44.284	-0.21939					54	19	4	0	0	0	0.12938	2	4073	4061;4073		152.47	37.885	1	3991900			86449	4640	60187	60285	96009;96010	96010					0.061035358374169846
VPLEMVHGL	9	Unmodified	_VPLEMVHGL_					0	0	0		nc|ENSG00000103269|O75783|RHBDL1;ENST00000450775.2_1_16:725790-727700:+|nuORF;ENSG00000103269|ENST00000352681|RHBDL1	nc|ENSG00000103269|O75783|RHBDL1	nc|ENSG00000103269|O75783|RHBDL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.7759094238281	2	497.773145	993.531738	0.38742	0.00019285	3.2732	0.0016293	3.6606	0.0018221	497.7747674784176	100.81	1.1712	100.67	100.46	101.63	-0.13364					54	28	3	0	0	0	0.36105	1	12535	12535		68.485	7.5128	1	642740			86450	18140	60188	60286	96011	96011					0.03471302059483605
VPLFHASL	8	Unmodified	_VPLFHASL_					0	0	0			REV__ENSG00000070388|ENST00000215530|FGF22	REV__ENSG00000070388|ENST00000215530|FGF22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2658386230469	2	442.255446	882.496338	-0.47127	-0.00020842	-1.9381	-0.00085713	-2.4093	-0.0010655	442.2546734548075	39.1	0.56877	39.001	38.772	39.341	-0.098755					35	15	3	0	0	0	0.027866	1	3362	3362		44.531	0	1	590960	+		86451	20423	60189	60287	96012	96012					0.05039007593984479
VPLFNLDP	8	Unmodified	_VPLFNLDP_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.7509460449219	2	457.752736	913.490919	-0.052218	-2.3903E-05	-4.3784	-0.0020042	-4.4307	-0.0020281	457.7506345967356	29.835	0.92331	29.686	29.296	30.219	-0.14952					58	21	4	0	0	0	0.6536	1	1834	1834		71.296	9.1883	1	1834400	+		86452	23269	60190	60288	96013	96013					0.030712840115029394
VPLFVATNN	9	Unmodified	_VPLFVATNN_					0	0	0			REV__nc|ENSG00000084734|Q14397|GCKR	REV__nc|ENSG00000084734|Q14397|GCKR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.795166015625	2	487.768917	973.523281	-0.55557	-0.00027099	-3.2118	-0.0015666	-3.7674	-0.0018376	487.76696556381216	28.4	0.75834	28.396	28.117	28.875	-0.0042019					29	17	2	0	0	0	0.024436	1	1634	1634		23.042	3.939	1	1484000	+		86453	20741	60191	60289	96014	96014					0.035460714145074235
VPLGHRDPSL	10	Unmodified	_VPLGHRDPSL_					0	0	0		HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3165893554688	2	545.803823	1089.59309	-0.33404	-0.00018232	-1.808	-0.0009868	-2.142	-0.0011691	545.8030637076337	89.137	0.49828	89.009	88.744	89.242	-0.12775					12	11	2	0	0	0	0.03519	1	10899	10899		26.693	0	1	98987			86454	17707	60192	60290	96015	96015					0.05187950083131909
VPLGRNVP	8	Unmodified	_VPLGRNVP_					0	0	0			REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF	REV__ENST00000372546.8_1_9:131851572-131851956:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.271240234375	2	426.25852	850.502486	-0.28772	-0.00012264	-1.5845	-0.00067543	-1.8723	-0.00079807	426.25781432182663	39.271	0.41819	39.271	39.076	39.495	0					16	11	2	0	0	0	0.027866	1	3361	3361		37.028	10.232	1	266480	+		86455	31209	60193	60291	96016	96016					0.07125525825517798
VPLHWPKP	8	Unmodified	_VPLHWPKP_					0	0	0			REV__sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	REV__sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.249755859375	2	487.284537	972.554522	-0.3822	-0.00018624	-3.1728	-0.0015461	-3.555	-0.0017323	487.28247858290354	26.084	0.74897	26.165	25.707	26.456	0.081291					26	17	2	0	0	0	0.027866	1	1204	1204		46.766	9.6073	1	189970	+		86456	37550	60194	60292	96017	96017					0.0671468923927705
VPLITASY	8	Unmodified	_VPLITASY_					0	0	0		ENSG00000181698|ENST00000641665|OR5T1;ENSG00000172489|ENST00000313033|OR5T3;nc|ENSG00000172489|Q8NGG3|OR5T3	ENSG00000181698|ENST00000641665|OR5T1;nc|ENSG00000172489|Q8NGG3|OR5T3	nc|ENSG00000172489|Q8NGG3|OR5T3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.245361328125	2	432.247286	862.48002	-0.94288	-0.00040756	0.22733	9.8263E-05	-0.71555	-0.00030929	432.2474517150645	93.471	1.3378	93.331	92.873	94.211	-0.13995					88	30	5	0	0	0	1.0017	1	11519	11519		37.028	0	1	1569400			86457	9061;18520	60195	60293	96018	96018					0.04327881637232167
VPLKIEKH	8	Unmodified	_VPLKIEKH_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2781066894531	2	482.302927	962.591301	-0.30059	-0.00014498	-2.9074	-0.0014022	-3.208	-0.0015472	482.3017215418933	20.194	0.34131	20.089	19.837	20.178	-0.10477					9	6	2	0	0	0	0.027866	1	500	500		19.36	0	1	12265	+		86458	24423	60196	60294	96019	96019					0.10850941065177722
VPLLEKCL	8	Unmodified	_VPLLEKCL_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	457.7508850097656	2	457.772614	913.530675	-0.77857	-0.00035641	3.2661	0.0014951	2.4875	0.0011387	457.77407864008035	29.65	0.80361	29.478	29.242	30.046	-0.17258					25	18	2	0	0	0	0.027866	1	1847	1847		82.305	8.3303	1	61632			86459	8100	60197	60295	96020	96020					0.07045087690585206
VPLLEKCL	8	Unmodified	_VPLLEKCL_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.772614	913.530675	-0.25538	-0.0001169	0.084679	3.8764E-05	-0.1707	-7.8141E-05	457.77169323437386	29.355	0.20031	29.433	29.327	29.527	0.078346	-0.051451	-0.00062547	NaN	82.305	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92781			86460	8100	60197	60295							0.07045087690585206
VPLLFIDL	8	Unmodified	_VPLLFIDL_					0	0	0			REV__ENSG00000158516|ENST00000222481|CPA2	REV__ENSG00000158516|ENST00000222481|CPA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.7778625488281	2	465.288954	928.563355	-0.60671	-0.0002823	-3.8642	-0.001798	-4.4709	-0.0020802	465.28724450080375	80.318	0.59086	80.318	79.953	80.544	0					17	13	2	0	0	0	0.027866	1	9996	9996		14.664	0	1	84804	+		86461	25201	60198	60296	96021	96021					0.09621618085100181
VPLLFRRR	8	Unmodified	_VPLLFRRR_					0	0	0			REV__ENST00000392553.2_1_14:105715530-105715764:+|nuORF	REV__ENST00000392553.2_1_14:105715530-105715764:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8474731445312	2	528.843085	1055.67162	5.0242	0.002657	4.1134	0.0021753	9.1377	0.0048324	528.845136468888	17.74	0.21691	17.8	17.686	17.903	0.06036					10	5	2	0	0	0	1.0574	1	177	177		13.775	0.81615	1	21957	+		86462	31613	60199	60297	96022	96022					0.14600847178871845
VPLLHPEEI	9	Unmodified	_VPLLHPEEI_					0	0	0		nc|ENSG00000186908|Q8IUH5-3|ZDHHC17;ENSG00000186908|ENST00000426126|ZDHHC17	nc|ENSG00000186908|Q8IUH5-3|ZDHHC17	nc|ENSG00000186908|Q8IUH5-3|ZDHHC17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.76123046875	2	523.797675	1045.5808	1.0625	0.00055654	1.9384	0.0010153	3.0009	0.0015719	523.7987072324853	59.83	0.37794	59.633	59.46	59.838	-0.19742					14	9	2	0	0	0	0.024354	1	6617	6617		38.806	0	1	304410			86463	9591	60200	60298	96023	96023					0.059829136200733046
VPLLLPLLLLL	11	Unmodified	_VPLLLPLLLLL_					0	0	0		VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant;ENSG00000168140|ENST00000304735|VASN	VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	VASN|p.S502Ifs*4|1|0.38|ENSG00000168140|chr16:4382379-4382380|-/A|frameshift_variant	MSMS	OPSCC_39_ClassI_Rep-1	1	406.29571533203125	3	406.292949	1215.85702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.55	1	112.55	112.05	113.05	0								0	0	0	1.7978	1	14148	14148		1.523	0	1				86464	7788	60201	60299	96024	96024					0.2577239213514986
VPLLPCLLP	9	Unmodified	_VPLLPCLLP_					0	0	0			REV__ENST00000560078.1_1_15:41106223-41106421:+|nuORF	REV__ENST00000560078.1_1_15:41106223-41106421:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.2571105957031	2	482.798632	963.582711	0.25355	0.00012242	3.4416	0.0016616	3.6952	0.001784	482.80019806920313	36.716	0.81365	36.716	36.229	37.042	0					38	21	2	0	0	0	0.024541	1	2976	2976		14.664	0	1	186550	+		86465	35132	60202	60300	96025	96025					0.09946251104349813
VPLPLAALL	9	Unmodified	_VPLPLAALL_					0	0	0			REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.7501220703125	2	453.804771	905.59499	-0.4936	-0.000224	0.71713	0.00032544	0.22354	0.00010144	453.80489492152924	81.291	0.81082	81.315	81.046	81.857	0.023911					41	19	3	0	0	0	0.024389	1	10086	10086		29.842	8.1392	1	507080	+		86466	34468	60203	60301	96026	96026					0.13841610839028817
VPLPLAALL	9	Unmodified	_VPLPLAALL_					0	0	0			REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	453.804771	905.59499	0.39736	0.00018032	-0.41326	-0.00018754	-0.015903	-7.2166E-06	453.8044620305304	81.229	0.61937	81	80.776	81.395	-0.2289	-0.16717	-0.00066864	NaN	39.021	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122400	+		86467	34468	60203	60301							0.13841610839028817
VPLPLAALL	9	Unmodified	_VPLPLAALL_					0	0	0			REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	453.804771	905.59499	0.24286	0.00011021	-0.10862	-4.9292E-05	0.13425	6.0921E-05	453.80465754204914	81.275	0.57599	81.081	80.76	81.336	-0.19333	-0.086249	-0.00039215	NaN	39.021	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155810	+		86468	34468	60203	60301							0.13841610839028817
VPLPLAALL	9	Unmodified	_VPLPLAALL_					0	0	0			REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	REV__ENST00000527132.1_1_11:11985552-11985876:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	453.804771	905.59499	-0.30148	-0.00013681	0.51068	0.00023175	0.2092	9.4937E-05	453.8048757989315	81.167	0.70502	81.024	80.736	81.441	-0.14249	-0.14328	0.00016993	NaN	39.021	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218730	+		86469	34468	60203	60301							0.13841610839028817
VPLPPLKV	8	Unmodified	_VPLPPLKV_					0	0	0		ENST00000594305.1_1_19:49467651-49468248:+|nuORF	ENST00000594305.1_1_19:49467651-49468248:+|nuORF	ENST00000594305.1_1_19:49467651-49468248:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	431.7792053222656	2	431.791664	861.568775	-0.086169	-3.7207E-05	1.4979	0.00064679	1.4118	0.00060959	431.7922077616039	35.359	0.23012	35.403	35.229	35.459	0.04406					6	5	2	0	0	0	0.027866	1	2648	2648		15.636	0.97212	1	20076			86470	17404	60204	60302	96027	96027					0.1324534166757303
VPLPQRAR	8	Unmodified	_VPLPQRAR_					0	0	0		ENST00000460939.5_1_11:62369776-62370417:-|nuORF	ENST00000460939.5_1_11:62369776-62370417:-|nuORF	ENST00000460939.5_1_11:62369776-62370417:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7503967285156	2	468.790518	935.566484	-0.98135	-0.00046005	1.307	0.00061272	0.32567	0.00015267	468.79087915975555	30.505	0.61955	30.505	30.3	30.92	0					20	14	2	0	0	0	0.027866	1	1952	1952		37.028	23.253	1	104110			86471	14668	60205	60303	96028	96028					0.09612305982454927
VPLPRKFSR	9	Unmodified	_VPLPRKFSR_					0	0	0		ENST00000423056.2_1_1:11541363-11541645:+|nuORF	ENST00000423056.2_1_1:11541363-11541645:+|nuORF	ENST00000423056.2_1_1:11541363-11541645:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.2763061523438	2	550.340375	1098.6662	-1.0449	-0.00057507	-0.51907	-0.00028567	-1.564	-0.00086074	550.3399642503485	51.57	0.5181	51.423	51.193	51.711	-0.14735					37	14	4	0	0	0	0.024541	1	5494	5494		23.042	3.939	1	1350500			86472	14019	60206	60304	96029	96029					0.12081123596408361
VPLPRMSL	8	Unmodified	_VPLPRMSL_					0	0	0		ENST00000481304.5_1_X:153668486-153668693:+|nuORF	ENST00000481304.5_1_X:153668486-153668693:+|nuORF	ENST00000481304.5_1_X:153668486-153668693:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.2586975097656	2	456.770406	911.526258	-0.15358	-7.0149E-05	0.89694	0.0004097	0.74337	0.00033955	456.77148946440747	33.759	0.27035	33.755	33.599	33.869	-0.0045624					12	6	2	0	0	0	0.027866	1	2453	2453		73.975	24.533	1	48159			86473	15226	60207	60305	96030	96030					0.06695623267671635
VPLPTLSL	8	Unmodified	_VPLPTLSL_					0	0	0		ENST00000340726.7_1_8:72273997-72274438:-|nuORF	ENST00000340726.7_1_8:72273997-72274438:-|nuORF	ENST00000340726.7_1_8:72273997-72274438:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2528381347656	2	420.265479	838.516405	-0.24962	-0.00010491	-0.91452	-0.00038434	-1.1641	-0.00048925	420.26509596603285	45.358	0.22778	45.358	45.147	45.375	0					9	6	2	0	0	0	0.027866	1	4379	4379		65.897	11.133	1	108000			86474	12476	60208	60306	96031	96031					0.09068758533953769
VPLPTTSTL	9	Unmodified	_VPLPTTSTL_					0	0	0		ENST00000547843.1_1_12:72058272-72058662:+|nuORF;ENST00000308086.2_1_12:72058272-72068101:+|nuORF	ENST00000547843.1_1_12:72058272-72058662:+|nuORF	ENST00000547843.1_1_12:72058272-72058662:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	464.7701110839844	2	464.771126	927.527698	-1.0745	-0.00049941	0.083484	3.8801E-05	-0.99103	-0.0004606	464.7711263977959	44.041	0.72247	43.822	43.562	44.284	-0.21939					54	19	4	0	0	0	0.20304	1	4085	4085		88.643	3.2834	1	3991900			86475	12024	60209	60307	96032	96032					0.061035358374169846
VPLPVDCEP	9	Unmodified	_VPLPVDCEP_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|299|3|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|299|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.7481994628906	2	484.741511	967.468469	0.23743	0.00011509	0.55842	0.00027069	0.79585	0.00038578	484.7417899232052	69.211	0.98606	68.918	68.289	69.275	-0.29292					47	25	3	0	0	0	0.024262	1	8229	8229		30.504	0	1	879040	+		86476	19328	60210	60308	96033	96033					-0.01656683448413787
VPLQPGRS	8	Unmodified	_VPLQPGRS_					0	0	0			REV__ENST00000360947.7_1_14:21561809-21566788:-|nuORF	REV__ENST00000360947.7_1_14:21561809-21566788:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7404479980469	2	427.248152	852.481751	-0.33744	-0.00014417	2.3143	0.00098878	1.9769	0.00084461	427.24886846738883	22.435	0.36986	22.25	22	22.369	-0.18539					10	7	2	0	0	0	0.027866	1	796	796		60.972	0.67798	1	83198	+		86477	30926	60211	60309	96034	96034					0.0496093544585392
VPLRERRE	8	Unmodified	_VPLRERRE_					0	0	0		ENST00000485811.5_1_1:44457505-44457763:+|nuORF;nc|ENSG00000159214|Q8N4L8-2|CCDC24;ENSG00000159214|ENST00000372318|CCDC24	ENST00000485811.5_1_1:44457505-44457763:+|nuORF	ENST00000485811.5_1_1:44457505-44457763:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.7672119140625	2	527.809439	1053.60433	-1.9973	-0.0010542	1.6679	0.00088034	-0.32943	-0.00017387	527.8101589115813	29.753	0.40766	29.753	29.528	29.936	0					17	9	2	0	0	0	0.027866	1	1873	1873		31.955	1.4512	1	173250			86478	6729	60212	60310	96035	96035					0.07966772177269377
VPLRLNSV	8	Unmodified	_VPLRLNSV_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	448.7452697753906	2	449.279452	896.544351	0.51444	0.00023113	-3.2061	-0.0014404	-2.6916	-0.0012093	449.27747103206593	47.073	0.63797	46.92	46.698	47.336	-0.15301					23	16	2	0	0	0	0.027866	1	4705	4705		25.45	13.939	1	143040	+		86479	20987	60213	60311	96036	96036					0.09194081514044683
VPLRLPRHL	9	Unmodified	_VPLRLPRHL_					0	0	0		ENST00000397174.6_2_1:41541080-41579040:-|nuORF	ENST00000397174.6_2_1:41541080-41579040:-|nuORF	ENST00000397174.6_2_1:41541080-41579040:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.813232421875	2	550.856193	1099.69783	-1.4724	-0.0008111	-3.3324	-0.0018357	-4.8049	-0.0026468	550.8543083791074	38.165	0.19601	38.165	38.003	38.199	0					9	5	2	0	0	0	0.024541	1	3174	3174		18.324	5.3652	1	97382			86480	13586	60214	60312	96037	96037					0.1519711635035037
VPLSLAGLL	9	Unmodified	_VPLSLAGLL_					0	0	0			REV__PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;REV__nc|ENSG00000114805|Q4KWH8|PLCH1	REV__nc|ENSG00000114805|Q4KWH8|PLCH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7878723144531	2	441.786579	881.558604	0.26634	0.00011766	2.8159	0.001244	3.0822	0.0013617	441.7877450758217	40.568	1.8112	40.568	40.176	41.987	0					181	51	5	0	0	0	0.90698	1	3554	3554		31.955	2.1133	1	35892000	+		86481	22146;36582	60215	60313	96038	96038					0.11308733942325944
VPLSLLLLI	9	Unmodified	_VPLSLLLLI_					0	0	0		ENST00000465519.5_1_3:195925313-195934370:-|nuORF;nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19;nc|ENSG00000163958|Q8WVZ1-3|ZDHHC19;ENSG00000163958|ENST00000296326|ZDHHC19	ENST00000465519.5_1_3:195925313-195934370:-|nuORF;nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19	ENST00000465519.5_1_3:195925313-195934370:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.2590026855469	2	490.841354	979.668155	0.70053	0.00034385	-1.2616	-0.00061923	-0.56105	-0.00027539	490.8406213855052	105.85	0.35692	105.69	105.52	105.87	-0.16132					23	14	2	0	0	0	0.024541	1	13169	13169		11.511	0	1	90023			86482	14785;7180	60216	60314	96039	96039					0.17750739561665796
VPLSTVNR	8	Unmodified	_VPLSTVNR_					0	0	0		nc|ENSG00000060971|P09110-2|ACAA1;ENSG00000060971|ENST00000333167|ACAA1;ENST00000465181.1_1_3:38170823-38175531:-|nuORF;ENSG00000255833|ENST00000537858|TIFAB	nc|ENSG00000060971|P09110-2|ACAA1;ENST00000465181.1_1_3:38170823-38175531:-|nuORF;ENSG00000255833|ENST00000537858|TIFAB	ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.7746887207031	2	443.261259	884.507966	-1.0072	-0.00044644	1.3437	0.00059563	0.33658	0.00014919	443.2617342268771	22.079	1.4288	22.153	21.639	23.068	0.073954					85	29	4	0	0	0	0.027866	1	646	646		25.45	0	1	630750			86483	1241;14774;10897	60217	60315	96040	96040					0.061092046173257586
VPLTELKAM	9	Unmodified	_VPLTELKAM_					0	0	0			REV__ENSG00000088899|ENST00000337576|LZTS3	REV__ENSG00000088899|ENST00000337576|LZTS3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.29046630859375	2	501.288628	1000.5627	0.79479	0.00039842	2.313	0.0011595	3.1078	0.0015579	501.2897053570595	85.068	2.978	85.068	84.258	87.236	0					219	70	4	0	0	0	0.94809	1	10589	10589		29.15	0	1	8460100	+		86484	20829	60218	60316	96041	96041					0.062444553737236674
VPLTSSSQLD	10	Unmodified	_VPLTSSSQLD_					0	0	0			REV__ENST00000300087.6_1_16:23678674-23678917:+|nuORF	REV__ENST00000300087.6_1_16:23678674-23678917:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.3036499023438	2	523.771854	1045.52915	0.37857	0.00019828	3.556	0.0018625	3.9345	0.0020608	523.7734807563387	85.927	1.1673	85.79	85.494	86.661	-0.13734					56	26	3	0	0	0	0.03519	1	10524	10524		39.253	0	1	558240	+		86485	30043	60219	60317	96042	96042					0.008211251355305649
VPLVIFKRE	9	Unmodified	_VPLVIFKRE_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	550.813232421875	2	550.844959	1099.67537	-1.4523	-0.00080001	0.5996	0.00033029	-0.85273	-0.00046972	551.346316172834	38.121	0.16169	38.121	38.037	38.199	0					6	4	2	0	0	0	0.024541	1	3174	3174		19.997	0.89325	1	115350			86486	10159;9837	60220	60318	96043	96043					0.1295147216208079
VPLVIFKRE	9	Unmodified	_VPLVIFKRE_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.844959	1099.67537	-0.55574	-0.00030613	-3.6379	-0.0020039	-4.1936	-0.00231	550.8427732043386	38.089	0.37264	37.91	37.63	38.002	-0.17929	-0.0095011	-0.00042645	NaN	19.997	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413280			86487	10159;9837	60220	60318							0.1295147216208079
VPLVIFKRE	9	Unmodified	_VPLVIFKRE_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.844959	1099.67537	-0.91035	-0.00050146	-3.3077	-0.001822	-4.218	-0.0023235	550.8430733801606	38.047	0.32054	37.825	37.577	37.898	-0.22148	-0.094314	-6.2675E-05	NaN	19.997	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426720			86488	10159;9837	60220	60318							0.1295147216208079
VPLVIFKRE	9	Unmodified	_VPLVIFKRE_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;ENST00000608590.5_1_1:237955470-237994843:+|nuORF	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.844959	1099.67537	-0.91677	-0.000505	-3.2189	-0.0017731	-4.1357	-0.0022781	550.8430465356446	38.04	0.41168	37.822	37.607	38.019	-0.21848	-0.097874	3.5138E-05	NaN	19.997	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371290			86489	10159;9837	60220	60318							0.1295147216208079
VPLWLVSLL	9	Unmodified	_VPLWLVSLL_					0	0	0		LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|2|1|sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|2|1|sense	LTR15_dup81|chr8:142765993-142766460:+|1.1480353590096697|0.0547139436100232|4.39|406.0|2|1|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3118286132812	2	520.331153	1038.64775	-0.7069	-0.00036782	3.9601	0.0020606	3.2532	0.0016928	520.3330056733679	53.163	0.18037	53.163	53.086	53.267	0					7	4	2	0	0	0	0.024412	1	5743	5743		50.025	9.4519	1	46720			86490	17935	60221	60319	96044	96044					0.12997568901846535
VPMALFIL	8	Unmodified	_VPMALFIL_					0	0	0		OR8H1|p.Q24P|1|0.09|ENSG00000181693|chr11:56290992-56290992|T/G|missense_variant	OR8H1|p.Q24P|1|0.09|ENSG00000181693|chr11:56290992-56290992|T/G|missense_variant	OR8H1|p.Q24P|1|0.09|ENSG00000181693|chr11:56290992-56290992|T/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2424011230469	2	452.27225	902.529947	-0.8822	-0.00039899	1.4138	0.00063941	0.53158	0.00024042	452.27297071229697	53.9	0.26988	53.764	53.598	53.867	-0.13617					13	8	2	0	0	0	0.027866	1	5656	5656		33.493	0	1	552710			86491	18927	60222	60320	96045	96045					0.07478293041538109
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(58)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.788330078125	2	539.789327	1077.5641	-0.57999	-0.00031307	1.0459	0.00056454	0.46587	0.00025147	539.7897497137631	57.485	0.60894	57.485	57.187	57.796	0					35	15	3	0	0	0	0.51687	1	6471	6471		58.23	11.773	1	3666200			86492	1742	60223	60321	96046	96046		62			0.028420894624787252
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(65)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.7900390625	2	539.789327	1077.5641	-0.39479	-0.0002131	0.89791	0.00048468	0.50313	0.00027158	539.7898167181147	57.698	0.95878	57.523	56.866	57.825	-0.1749					44	25	3	0	0	0	0.40693	2	6483	6472;6483		65.465	14.273	1	2929400			86493	1742	60223	60321	96047;96048	96048		62			0.028420894624787252
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(58)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7890625	2	539.789327	1077.5641	0.00088836	4.7953E-07	0.29254	0.00015791	0.29343	0.00015839	539.789354779973	59.332	1.2971	59.144	58.623	59.921	-0.18795					53	32	2	0	0	0	0.51687	1	6565	6565		58.23	6.8945	1	918660			86494	1742	60223	60321	96049	96049		62			0.028420894624787252
VPMFRNVSL	9	Unmodified	_VPMFRNVSL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.7911987304688	2	531.791869	1061.56919	-0.46022	-0.00024474	0.61052	0.00032467	0.1503	7.9927E-05	531.7920488982852	63.321	0.64619	63.321	63.09	63.736	0					45	17	4	0	0	0	0.2101	2	7418	7406;7418		87.696	26.724	1	4686900			86495	1742	60223	60322	96050;96051	96051					0.040863933251102935
VPMFRNVSL	9	Unmodified	_VPMFRNVSL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7907104492188	2	531.791869	1061.56919	-0.29745	-0.00015818	0.40702	0.00021645	0.10957	5.8269E-05	531.7919553736626	63.545	0.68204	63.294	63.048	63.73	-0.25141					47	18	3	0	0	0	0.2101	2	7419	7407;7419		87.696	21.893	1	4926900			86496	1742	60223	60322	96052;96053	96053					0.040863933251102935
VPMFRNVSL	9	Unmodified	_VPMFRNVSL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7911376953125	2	531.791869	1061.56919	1.1579	0.00061576	-1.2766	-0.00067886	-0.11867	-6.3107E-05	531.7910713184638	63.337	0.74875	63.391	63.126	63.875	0.054104					48	20	3	0	0	0	0.26966	3	7333	7323;7333;7347		79.713	22.992	1	4584300			86497	1742	60223	60322	96054;96055;96056	96055					0.040863933251102935
VPMFRNVSL	9	Unmodified	_VPMFRNVSL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.3071899414062	2	531.791869	1061.56919	-0.23268	-0.00012374	0.0085423	4.5427E-06	-0.22413	-0.00011919	531.7917406190463	63.597	0.64516	63.369	63.095	63.74	-0.22773					39	16	3	0	0	0	0.023274	1	7186	7186		98.629	30.145	1	3180600			86498	1742	60223	60322	96057	96057					0.040863933251102935
VPMFRNVSL	9	Unmodified	_VPMFRNVSL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3067626953125	2	531.791869	1061.56919	-0.56658	-0.0003013	0.25474	0.00013547	-0.31185	-0.00016584	531.7918510174522	63.58	0.728	63.387	63.029	63.757	-0.19243					38	18	3	0	0	0	0.022657	1	7188	7188		87.696	7.7572	1	3767600			86499	1742	60223	60322	96058	96058					0.040863933251102935
VPMFRNVSL	9	Unmodified	_VPMFRNVSL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.3062744140625	2	531.791869	1061.56919	0.2443	0.00012992	-0.47597	-0.00025312	-0.23167	-0.0001232	531.7914407635202	63.644	0.71078	63.386	63.081	63.792	-0.25824					36	18	3	0	0	0	0.022411	1	7180	7180		101.6	33.116	1	4272100			86500	1742	60223	60322	96059	96059					0.040863933251102935
VPMHEALSGP	10	Unmodified	_VPMHEALSGP_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.8109741210938	2	519.257859	1036.50117	-1.8796	-0.00097602	0.86521	0.00044927	-1.0144	-0.00052675	519.257418500869	60.494	0.71511	60.572	60.203	60.918	0.078888					32	18	3	0	0	0	0.03519	1	6888	6888		37.159	6.6555	1	199950	+		86501	24353	60224	60323	96060	96060					-0.015624763255345897
VPMIEGYM	8	Unmodified	_VPMIEGYM_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000487875.5_1_15:91491769-91496943:+|nuORF;ENST00000471780.1_1_15:91493362-91496943:+|nuORF;nc|ENSG00000140553|Q9H3U1-3|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	470.7641296386719	2	470.219357	938.424161	0.21217	9.9769E-05	4.1422	0.0019478	4.3544	0.0020475	470.22119640837803	30.809	1.3119	30.883	30.42	31.732	0.074314					42	31	2	0	0	0	0.027866	1	2065	2065		21.702	0	1	82246			86502	5425	60225	60324	96061	96061					-0.04751410866231254
VPMLVPVPV	9	Unmodified	_VPMLVPVPV_					0	0	0		nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	nc|ENSG00000134057|P14635-2|CCNB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	476.2488098144531	2	475.790807	949.56706	-0.10189	-4.848E-05	3.7591	0.0017885	3.6572	0.0017401	475.7924266585886	51.549	0.74079	51.402	50.935	51.676	-0.14735					48	20	3	0	0	0	0.024475	1	5471	5471		14.664	0	1	469250			86503	4748	60226	60325	96062	96062					0.09025964587294766
VPMRSNRL	8	Unmodified	_VPMRSNRL_					0	0	0			REV__ENST00000379938.6_3_6:7251841-7251985:+|nuORF	REV__ENST00000379938.6_3_6:7251841-7251985:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.31597900390625	2	486.774011	971.533469	-1.2693	-0.00061784	-1.0604	-0.00051616	-2.3296	-0.001134	486.7737881459528	39.379	0.77189	39.403	39.17	39.942	0.023727					39	21	4	0	0	0	0.027866	1	3373	3373		42.396	0	1	549760	+		86504	31455	60227	60326	96063	96063					0.04656355868121409
VPMSLMVNAL	10	2 Oxidation (M)	_VPM(Oxidation (M))SLM(Oxidation (M))VNAL_		VPM(1)SLM(1)VNAL		VPM(110)SLM(110)VNAL	0	0	2			REV__nc|ENSG00000140254|Q1HG43-3|DUOXA1	REV__nc|ENSG00000140254|Q1HG43-3|DUOXA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7827758789062	2	553.782853	1105.55115	0.26248	0.00014536	-0.62666	-0.00034703	-0.36418	-0.00020168	553.782490316632	82.752	2.1822	82.571	82.201	84.383	-0.18079					95	50	2	0	0	0	0.28861	1	9994	9994		110.12	11.49	1	5008800	+		86505	23993	60228	60327	96064	96064		714;715			0.0025989028811181925
VPMVLGHLV	9	Unmodified	_VPMVLGHLV_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.7843017578125	2	482.786056	963.557558	0.13616	6.5735E-05	-3.5541	-0.0017159	-3.418	-0.0016502	482.78416341419427	72.649	1.07	72.649	72.292	73.362	0					76	26	4	0	0	0	0.48384	2	8855	8843;8855		60.404	25.203	1	1791300	+		86506	28659	60229	60328	96065;96066	96066					0.07432196301783733
VPMVLGHLV	9	Unmodified	_VPMVLGHLV_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7844543457031	2	482.786056	963.557558	0.40478	0.00019542	-3.8083	-0.0018386	-3.4035	-0.0016432	482.7840246086426	73.006	0.88227	72.725	72.385	73.267	-0.28124					65	21	4	0	0	0	0.80342	1	8871	8871		39.021	1.993	1	1879100	+		86507	28659	60229	60328	96067	96067					0.07432196301783733
VPNAGRGLVRL	11	Unmodified	_VPNAGRGLVRL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.3525390625	2	576.354014	1150.69348	-1.7764	-0.0010238	0.97728	0.00056326	-0.79909	-0.00046056	576.3545094797714	44.663	0.79963	44.663	44.348	45.147	0					63	22	4	0	0	0	0.84811	1	4294	4294		54.776	5.2403	1	5674200			86508	2251	60230	60329	96068	96068					0.12415607136813378
VPNARFKK	8	Unmodified	_VPNARFKK_					0	0	0			REV__nc|ENSG00000170264|Q3B820-2|FAM161A	REV__nc|ENSG00000170264|Q3B820-2|FAM161A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.77117919921875	2	480.292894	958.571235	0.56596	0.00027182	-1.8525	-0.00088973	-1.2865	-0.0006179	480.29181829625037	74.495	0.59047	74.237	74.028	74.619	-0.25887					28	13	3	0	0	0	0.027866	1	9137	9137		35.201	0	1	354560	+		86509	26449	60231	60330	96069	96069					0.0902919012522716
VPNEMIWD	8	Unmodified	_VPNEMIWD_					0	0	0			REV__nc|ENSG00000197816|Q9P1Z9|CCDC180;REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	REV__ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	501.30291748046875	2	502.23131	1002.44807	-0.27285	-0.00013703	-4.2749	-0.002147	-4.5478	-0.002284	502.73128630769526	25.48	0.20725	25.31	25.163	25.371	-0.17078					9	4	3	0	0	0	0.027866	1	1207	1207		26.796	11.154	1	28114	+		86510	37064;31322	60232	60331	96070	96070					-0.05305854108223684
VPNGTVSQL	9	Unmodified	_VPNGTVSQL_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.750732421875	2	457.750724	913.486896	-0.93288	-0.00042703	1.3169	0.00060281	0.384	0.00017578	457.75112514674305	29.847	1.2285	29.847	28.947	30.176	0					50	30	3	0	0	0	0.34489	1	1863	1863		69.628	0.8408	1	1198600	+		86511	25538	60233	60332	96071	96071					0.026691945178072274
VPNGTVSQL	9	Unmodified	_VPNGTVSQL_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.75115966796875	2	457.750724	913.486896	-0.34771	-0.00015916	0.45482	0.0002082	0.10712	4.9033E-05	457.7507988385714	29.959	1.2242	29.715	29.358	30.582	-0.24415					67	28	4	0	0	0	0.2508	2	1867	1867;1889		82.241	5.3939	1	1876100	+		86512	25538	60233	60332	96072;96073	96072					0.026691945178072274
VPNGTVSQL	9	Unmodified	_VPNGTVSQL_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.7508850097656	2	457.750724	913.486896	-0.83299	-0.0003813	0.88098	0.00040327	0.047989	2.1967E-05	457.7510139270922	29.814	1.2658	29.641	29.365	30.631	-0.17258					73	29	5	0	0	0	0.2508	1	1847	1847		82.241	10.945	1	1777000	+		86513	25538	60233	60332	96074	96074					0.026691945178072274
VPNGTVSQL	9	Unmodified	_VPNGTVSQL_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	457.750724	913.486896	-0.93288	-0.00042703	1.3169	0.00060281	0.384	0.00017578	457.75112514674305	29.847	1.2285	29.847	28.947	30.176	0	0.13314	0.00060168	NaN	82.241	50	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1198600	+		86514	25538	60233	60332							0.026691945178072274
VPNGTVSQL	9	Unmodified	_VPNGTVSQL_					0	0	0			REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	REV__nc|ENSG00000163125|Q5VT52-5|RPRD2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	457.750724	913.486896	-0.38749	-0.00017737	0.91715	0.00041983	0.52967	0.00024246	457.7509137459578	29.484	1.23	29.562	28.612	29.842	0.078344	-0.15198	0.00023572	NaN	82.241	52	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1272000	+		86515	25538	60233	60332							0.026691945178072274
VPNLFISSLA	10	Unmodified	_VPNLFISSLA_					0	0	0		ENSG00000126010|ENST00000380289|GRPR	ENSG00000126010|ENST00000380289|GRPR	ENSG00000126010|ENST00000380289|GRPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2822875976562	2	530.8055	1059.59645	-1.3544	-0.0007189	3.3808	0.0017945	2.0264	0.0010756	530.8079375982992	39.884	0.18922	39.772	39.603	39.792	-0.11223					6	4	2	0	0	0	0.03519	1	3445	3445		23.042	7.4007	1	76567			86516	4175	60234	60333	96075	96075					0.0690320013713972
VPNMKPPER	9	Unmodified	_VPNMKPPER_					0	0	0			REV__ENSG00000176946|ENST00000407315|THAP4	REV__ENSG00000176946|ENST00000407315|THAP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2907104492188	2	534.286951	1066.55935	-0.28454	-0.00015203	3.093	0.0016525	2.8084	0.0015005	534.2896214958064	107.36	0.76871	107.36	106.67	107.44	-0.003479					34	25	2	0	0	0	0.96906	1	13743	13743		26.693	2.4902	1	162560	+		86517	27065	60235	60334	96076	96076					0.028732053197245477
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.829345703125	2	534.82984	1067.64513	-0.95767	-0.00051219	0.39754	0.00021261	-0.56014	-0.00029958	534.8299265340067	34.767	0.8618	34.767	34.444	35.306	0					68	22	4	0	0	0	0.1158	1	2625	2625		107.01	42.8	1	1694000			86518	1381	60236	60335	96077	96077					0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.8297119140625	2	534.82984	1067.64513	-0.78589	-0.00042032	0.14269	7.6316E-05	-0.6432	-0.000344	534.8297877022893	34.529	1.0252	34.524	34.225	35.251	-0.0045624					65	26	4	0	0	0	0.2101	1	2585	2585		87.696	40.039	1	1732000			86519	1381	60236	60335	96078	96078					0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.8294067382812	2	534.82984	1067.64513	-1.227	-0.00065622	0.71421	0.00038198	-0.51276	-0.00027424	534.8300989174406	34.607	0.9815	34.657	34.329	35.311	0.050255					66	25	4	0	0	0	0.17845	1	2543	2543		93.143	28.936	1	1643600			86520	1381	60236	60335	96079	96079					0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.82984	1067.64513	-0.26241	-0.00014035	0.2969	0.00015879	0.03449	1.8446E-05	534.8298580835085	34.695	0.56618	34.471	34.219	34.785	-0.22412	-0.083223	-0.00024233	NaN	107.01	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438030			86521	1381	60236	60335							0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.82984	1067.64513	-0.6871	-0.00036748	0.58937	0.00031521	-0.097731	-5.2269E-05	534.8300797637637	34.664	0.80825	34.457	34.16	34.968	-0.20696	-0.097293	7.0511E-05	NaN	107.01	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467620			86522	1381	60236	60335							0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.82984	1067.64513	-0.95871	-0.00051275	0.81944	0.00043826	-0.13927	-7.4486E-05	534.8301203258661	34.626	0.71633	34.45	34.168	34.884	-0.17557	-0.10418	0.00031661	NaN	107.01	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503020			86523	1381	60236	60335							0.11401113496890503
VPPACQQSALP	11	Unmodified	_VPPACQQSALP_					0	0	0		nc|ENSG00000111361|Q14232-2|EIF2B1	nc|ENSG00000111361|Q14232-2|EIF2B1	nc|ENSG00000111361|Q14232-2|EIF2B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	555.3009643554688	2	555.784241	1109.55393	-1.1234	-0.00062438	-1.7858	-0.0009925	-2.9092	-0.0016169	555.7830702598343	46.547	0.67811	46.394	46.098	46.776	-0.15301					29	18	2	0	0	0	0.024756	1	4551	4551		52.937	27.363	1	256730			86524	18169	60237	60336	96080	96080					0.0035348173723832588
VPPAGIALL	9	Unmodified	_VPPAGIALL_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.7749938964844	2	425.773471	849.53239	-0.20506	-8.731E-05	3.2791	0.0013961	3.074	0.0013088	425.77482073258034	42.256	0.99166	42.024	41.733	42.725	-0.23186					102	26	5	0	0	0	1.0281	1	3807	3807		14.664	0	1	38059000			86525	7239	60238	60337	96081	96081					0.10160464770854105
VPPAKKKSA	9	Unmodified	_VPPAKKKSA_					0	0	0			REV__ENSG00000118412|ENST00000551025|CASP8AP2	REV__ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.756103515625	2	463.295102	924.575651	-0.16882	-7.8214E-05	-0.15859	-7.3472E-05	-0.32741	-0.00015169	463.2947862584161	40.147	0.65673	40.035	39.83	40.487	-0.11223					28	17	3	0	0	0	0.024381	1	3524	3524		55.504	31.301	1	406860	+		86526	22403	60239	60338	96082	96082					0.11034654548132039
VPPAVPGITF	10	Unmodified	_VPPAVPGITF_					0	0	0		ENST00000398050.3_1_10:127355642-127355750:-|nuORF	ENST00000398050.3_1_10:127355642-127355750:-|nuORF	ENST00000398050.3_1_10:127355642-127355750:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.8212585449219	2	499.289485	996.564418	-0.81738	-0.00040811	-3.386	-0.0016906	-4.2033	-0.0020987	499.2873219599713	39.279	0.56632	39.181	38.914	39.48	-0.098755					27	15	2	0	0	0	0.03519	1	3399	3399		23.042	0	1	392410			86527	13613	60240	60339	96083	96083					0.06599832453980525
VPPDRTQT	8	Unmodified	_VPPDRTQT_					0	0	0			REV__nc|ENSG00000104888|Q9P2U7-3|SLC17A7;REV__ENST00000598018.1_1_19:49936751-49940072:-|nuORF	REV__nc|ENSG00000104888|Q9P2U7-3|SLC17A7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	456.25830078125	2	457.240524	912.466495	-0.091821	-4.1984E-05	-0.19123	-8.7438E-05	-0.28305	-0.00012942	457.24032248070085	32.413	0.41969	32.413	32.186	32.606	0					14	10	2	0	0	0	0.027866	1	2213	2213		44.117	0	1	55790	+		86528	21478;35814	60241	60340	96084	96084					0.0067602385800000775
VPPFINDVL	9	Unmodified	_VPPFINDVL_					0	0	0			REV__ENST00000482745.5_1_6:32607639-32610538:+|nuORF	REV__ENST00000482745.5_1_6:32607639-32610538:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.3006896972656	2	507.286943	1012.55933	-0.83874	-0.00042548	1.1414	0.00057902	0.30266	0.00015354	507.28755023898196	32.809	0.60495	32.809	32.569	33.174	0					26	15	2	0	0	0	0.024466	1	2281	2281		25.45	0	1	643050	+		86529	28221	60242	60341	96085	96085					0.05355528591371694
VPPLELTT	8	Unmodified	_VPPLELTT_					0	0	0		ENST00000356864.3_1_8:22960127-22960358:+|nuORF	ENST00000356864.3_1_8:22960127-22960358:+|nuORF	ENST00000356864.3_1_8:22960127-22960358:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	435.2511901855469	2	435.252569	868.490584	0.080324	3.4961E-05	-2.8244	-0.0012293	-2.7441	-0.0011944	435.25127064702843	78.178	4.2564	78.194	77.065	81.321	0.015907					310	102	4	0	0	0	1.0133	1	9826	9826		35.201	3.2459	1	1590300			86530	12680	60243	60342	96086	96086					0.05107864291653641
VPPLKKILL	9	Unmodified	_VPPLKKILL_					0	0	0			REV__USP9X-BLVRB|1|fusion	REV__USP9X-BLVRB|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.78948974609375	2	510.862621	1019.71069	0.6065	0.00030984	1.4774	0.00075476	2.0839	0.0010646	511.3642220194163	85.695	0.45565	85.695	85.5	85.956	0					16	10	3	0	0	0	0.024541	1	10760	10760		12.959	0	1	92439	+		86531	37773	60244	60343	96087	96087					0.2016213468988326
VPPLKLCKNLN	11	Unmodified	_VPPLKLCKNLN_					0	0	0		ENSG00000122694|ENST00000377960|GLIPR2	ENSG00000122694|ENST00000377960|GLIPR2	ENSG00000122694|ENST00000377960|GLIPR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.868108	1237.72166	-0.66004	-0.00040914	2.7871	0.0017276	2.1271	0.0013185	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0399	1	11576	11576		27.882	2.3082	1	5229800			86532	3938	60245	60344	96088	96088					0.11231169001871422
VPPLLGVTS	9	Unmodified	_VPPLLGVTS_					0	0	0			REV__ENSG00000142396|ENST00000413518|ERVK3-1	REV__ENSG00000142396|ENST00000413518|ERVK3-1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7684020996094	2	441.768386	881.522219	0.14561	6.4327E-05	-1.2505	-0.00055245	-1.1049	-0.00048812	441.76790990667746	102.78	1.6063	102.79	102.46	104.06	0.0054169					106	40	5	0	0	0	0.97516	1	13131	13131		25.45	1.2474	1	27080000	+		86533	24152	60246	60345	96089	96089					0.07671857045625075
VPPLLQAS	8	Unmodified	_VPPLLQAS_					0	0	0		ENST00000538930.5_1_16:57075247-57096263:+|nuORF	ENST00000538930.5_1_16:57075247-57096263:+|nuORF	ENST00000538930.5_1_16:57075247-57096263:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	412.7462158203125	2	412.747453	823.480354	0.7645	0.00031555	-3.8759	-0.0015998	-3.1114	-0.0012842	412.7457683107616	84.583	1.9803	84.424	83.671	85.651	-0.15869					114	46	4	0	0	0	1.0572	1	10246	10246		28.254	2.8041	1	6553300			86534	16395	60247	60346	96090	96090					0.06155301357091503
VPPNDNADA	9	Unmodified	_VPPNDNADA_					0	0	0			REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.2582702636719	2	456.706514	911.398475	0.72161	0.00032956	-0.63782	-0.0002913	0.083785	3.8265E-05	456.706058824198	33.358	0.4746	33.415	33.141	33.615	0.056572					17	12	2	0	0	0	0.024025	1	2335	2335		44.377	0	1	63430	+		86535	29120	60248	60347	96091	96091					-0.06076845792676977
VPPPALKP	8	Unmodified	_VPPPALKP_					0	0	0			REV__ENST00000503410.1_1_17:48047044-48050176:+|nuORF	REV__ENST00000503410.1_1_17:48047044-48050176:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	409.7422790527344	2	409.760364	817.506175	0.62425	0.00025579	2.1394	0.00087666	2.7637	0.0011325	409.76011099896937	54.843	0.10191	54.941	54.881	54.982	0.098015					4	2	2	0	0	0	0.027866	1	5942	5942		8.2313	3.5495	1	55604	+		86536	33951	60249	60348	96092	96092					0.09012195599359529
VPPPKALSL	9	Unmodified	_VPPPKALSL_					0	0	0			REV__ENST00000374280.3_1_1:26348660-26348735:+|nuORF	REV__ENST00000374280.3_1_1:26348660-26348735:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.2799072265625	2	461.292028	920.569503	0.22741	0.0001049	-0.12946	-5.9718E-05	0.097948	4.5183E-05	461.29193851711256	42.587	0.21603	42.587	42.534	42.75	0					7	5	2	0	0	0	0.024381	1	3922	3922		29.15	10.825	1	97496	+		86537	31291	60250	60349	96093	96093					0.10604136316624135
VPPPPNLRGRG	11	Unmodified	_VPPPPNLRGRG_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	580.3072509765625	2	580.338364	1158.66217	-0.071086	-4.1254E-05	-0.076977	-4.4673E-05	-0.14806	-8.5927E-05	580.839407357765	100.43	0.20459	100.31	100.2	100.4	-0.12504					7	4	2	0	0	0	0.024735	1	12475	12475		19.997	0	1	157610			86538	4344;17280	60251	60350	96094	96094					0.0891903410267787
VPPPRKKRIS	10	Unmodified	_VPPPRKKRIS_					0	0	0		nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.3430786132812	2	589.380032	1176.74551	-1.2763	-0.00075221	-2.5183	-0.0014842	-3.7946	-0.0022364	589.3794234087213	93.407	0.21143	93.407	93.303	93.515	0					5	4	2	0	0	0	0.03519	1	11876	11876		12.207	0	1	22648			86539	2226	60252	60351	96095	96095					0.16420770550553243
VPPPRKKTK	9	Unmodified	_VPPPRKKTK_					0	0	0			REV__nc|ENSG00000020219|A6NM43|CCT8L1P	REV__nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.7769165039062	2	525.842751	1049.67095	-0.21487	-0.00011299	-1.5749	-0.00082813	-1.7897	-0.00094112	525.8417729023249	49.8	0.3359	49.649	49.445	49.781	-0.1512					12	8	2	0	0	0	0.024541	1	5119	5119		12.959	0	1	62114	+		86540	36440	60253	60352	96096	96096					0.1481000773917458
VPPQLESCLVD	11	Unmodified	_VPPQLESCLVD_					0	0	0			REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|313|3|anti-sense	REV__HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|313|3|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	600.8250122070312	2	600.302464	1198.59037	-0.54315	-0.00032605	0.58266	0.00034977	0.039512	2.3719E-05	600.3024099229932	54.778	0.54026	54.548	54.315	54.855	-0.23087					34	14	3	0	0	0	0.024732	1	5871	5871		32.812	13.709	1	519260	+		86541	36125	60254	60353	96097	96097					-0.0009768615668690472
VPPREKSVAL	10	Unmodified	_VPPREKSVAL_					0	0	0		ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.767333984375	2	548.329673	1094.64479	-0.14685	-8.052E-05	-0.71582	-0.00039251	-0.86267	-0.00047303	548.3293806216972	32.095	0.59867	31.858	31.74	32.339	-0.23667					19	13	2	0	0	0	0.03519	1	2203	2203		22.58	7.7148	1	64514			86542	5606	60255	60354	96098	96098					0.10125693777035849
VPPRPNDKKL	10	Unmodified	_VPPRPNDKKL_					0	0	0			REV__ENST00000587439.5_1_19:36110588-36110915:+|nuORF	REV__ENST00000587439.5_1_19:36110588-36110915:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3485107421875	2	582.348397	1162.68224	0.56465	0.00032882	-0.65601	-0.00038203	-0.091366	-5.3207E-05	582.3479028751376	18.625	0.74184	18.469	18.247	18.989	-0.15637					30	14	4	0	0	0	0.98754	1	336	336		47.657	6.2307	1	333350	+		86543	35625	60256	60355	96099	96099					0.10740785042662537
VPPRYEDTD	9	Unmodified	_VPPRYEDTD_					0	0	0			REV__nc|ENSG00000128656|P15882-3|CHN1	REV__nc|ENSG00000128656|P15882-3|CHN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.3167724609375	2	546.253828	1090.4931	0.38649	0.00021112	1.6779	0.00091655	2.0644	0.0011277	546.2543555924589	87.166	0.46018	87.03	86.844	87.304	-0.13613					16	10	2	0	0	0	0.024457	1	10617	10617		15.642	0	1	76554	+		86544	23005	60257	60356	96100	96100					-0.048523320413323745
VPPSVIQQGAP	11	Unmodified	_VPPSVIQQGAP_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.816650390625	2	546.806031	1091.59751	-0.011252	-6.1528E-06	-0.12511	-6.8413E-05	-0.13637	-7.4566E-05	546.8058092671852	54.276	0.54671	54.374	54.114	54.66	0.098015					28	15	2	0	0	0	0.024735	1	5863	5863		19.997	5.8596	1	908220			86545	2431	60258	60357	96101	96101					0.05537414506034111
VPPSVIQQGAP	11	Unmodified	_VPPSVIQQGAP_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.806031	1091.59751	-1.1334	-0.00061977	0.72429	0.00039605	-0.40915	-0.00022372	546.8063087485835	54.516	0.54475	54.516	54.249	54.794	0	0.019594	0.00030666	NaN	26.693	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	860030			86546	2431	60258	60357							0.05537414506034111
VPPSVIQQGAP	11	Unmodified	_VPPSVIQQGAP_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.806031	1091.59751	-0.63832	-0.00034904	0.57395	0.00031384	-0.064362	-3.5193E-05	546.8062287224782	54.554	0.5542	54.404	54.191	54.745	-0.15036	-0.093074	0.00014225	NaN	26.693	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	936710			86547	2431	60258	60357							0.05537414506034111
VPPSVIQQGAP	11	Unmodified	_VPPSVIQQGAP_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.806031	1091.59751	-0.5592	-0.00030577	1.455	0.00079561	0.89581	0.00048983	546.8065731384793	54.698	0.26207	54.552	54.424	54.686	-0.14609	0.055069	0.0011058	NaN	26.693	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141320			86548	2431	60258	60357							0.05537414506034111
VPPSVIQQGAP	11	Unmodified	_VPPSVIQQGAP_					0	0	0		ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-3|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	ENSG00000102804|ENST00000458659|TSC22D1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.806031	1091.59751	-0.20781	-0.00011363	0.35771	0.0001956	0.1499	8.1966E-05	546.8057611805198	54.869	0.21679	54.638	54.494	54.711	-0.23087	0.14143	-9.424E-05	NaN	26.693	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99647			86549	2431	60258	60357							0.05537414506034111
VPPTEGLL	8	Unmodified	_VPPTEGLL_					0	0	0			REV__nc|ENSG00000114770|O15440-5|ABCC5	REV__nc|ENSG00000114770|O15440-5|ABCC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	413.2379455566406	2	413.239461	824.46437	0.092707	3.831E-05	-3.0236	-0.0012495	-2.9309	-0.0012111	413.23811756919946	76.351	3.9324	76.183	74.993	78.925	-0.16853					174	94	3	0	0	0	1.0017	1	9060	9060		37.028	0	1	809840	+		86550	22142	60259	60358	96102	96102					0.04511595120197853
VPPVIKLL	8	Unmodified	_VPPVIKLL_					0	0	0		ENST00000505189.5_3_4:159133255-159133342:+|nuORF	ENST00000505189.5_3_4:159133255-159133342:+|nuORF	ENST00000505189.5_3_4:159133255-159133342:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.2523193359375	2	439.807314	877.600075	0.71954	0.00031646	-0.61187	-0.0002691	0.10767	4.7355E-05	439.8069563391407	90.521	0.62751	90.383	90.077	90.704	-0.13824					27	14	3	0	0	0	0.027866	1	11036	11036		1.619	0	1	188200			86551	15728	60260	60359	96103	96103					0.156379147016537
VPPVYYLLV	9	Unmodified	_VPPVYYLLV_					0	0	0			REV__ENSG00000196248|ENST00000641123|OR10S1	REV__ENSG00000196248|ENST00000641123|OR10S1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8165893554688	2	531.815336	1061.61612	-0.018498	-9.8373E-06	2.6158	0.0013911	2.5973	0.0013813	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.93795	1	10864	10864		29.842	3.0454	1	3781500	+		86552	28153	60261	60360	96104	96104					0.08777576147872423
VPPYMLDLY	9	Unmodified	_VPPYMLDLY_					0	0	0		ENSG00000125845|ENST00000378827|BMP2	ENSG00000125845|ENST00000378827|BMP2	ENSG00000125845|ENST00000378827|BMP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	555.3006591796875	2	555.780636	1109.54672	-0.0031737	-1.7639E-06	2.8622	0.0015907	2.859	0.001589	555.7822938584063	46.396	0.59537	46.447	46.239	46.834	0.051399					30	16	2	0	0	0	0.024386	1	4500	4500		52.299	15.14	1	220970			86553	4150	60262	60361	96105	96105					-0.0036725086315527733
VPQAQPVLV	9	Unmodified	_VPQAQPVLV_					0	0	0		ENST00000471741.1_1_10:101180368-101190322:-|nuORF;ENSG00000120053|ENST00000370508|GOT1	ENST00000471741.1_1_10:101180368-101190322:-|nuORF	ENST00000471741.1_1_10:101180368-101190322:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	475.78717041015625	2	475.78711	949.559667	0.36201	0.00017224	-0.46926	-0.00022327	-0.10725	-5.1028E-05	475.7868325295316	85.757	1.4476	85.619	84.908	86.356	-0.13752					87	33	4	0	0	0	0.88411	1	10417	10417		33.516	1.5607	1	4488600			86554	3788	60263	60362	96106	96106					0.08286948311240394
VPQDASTK	8	Unmodified	_VPQDASTK_					0	0	0		nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-7|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENST00000513545.5_1_19:49458896-49464890:+|nuORF;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX	nc|ENSG00000087088|Q07812-5|BAX	nc|ENSG00000087088|Q07812-5|BAX	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.22259521484375	2	423.2218	844.429047	-0.1942	-8.2189E-05	2.0008	0.00084679	1.8066	0.0007646	423.2225094506578	29.183	1.3209	29.261	28.979	30.3	0.078344					62	32	3	0	0	0	0.99042	1	1711	1711		38.806	3.1879	1	1782200			86555	1835	60264	60363	96107	96107					0.0006093259238468818
VPQDELRR	8	Unmodified	_VPQDELRR_					0	0	0			REV__ENST00000368662.9_1_6:112393171-112393252:-|nuORF	REV__ENST00000368662.9_1_6:112393171-112393252:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.8237609863281	2	506.780348	1011.54614	0.43085	0.00021835	1.2969	0.00065724	1.7277	0.00087558	506.78029432889844	43.135	0.36594	43.166	43.01	43.376	0.030827					12	9	2	0	0	0	0.027866	1	3950	3950		24.203	0	1	141030	+		86556	31060	60265	60364	96108	96108					0.04083090531992184
VPQDLMLPSNP	11	Oxidation (M)	_VPQDLM(Oxidation (M))LPSNP_		VPQDLM(1)LPSNP		VPQDLM(45)LPSNP	0	0	1		ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.N288Kfs*12|1|0.07|ENSG00000151952|chr12:129699914-129699914|G/-|frameshift_variant;TMEM132D|p.R566Afs*15|1|0.26|ENSG00000151952|chr12:129081986-129081986|G/-|frameshift_variant	ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.54290771484375	3	409.541034	1225.60127	-0.13917	-5.6996E-05	3.3537	0.0013735	3.2145	0.0013165	409.5426552189627	22.184	1.173	21.999	21.473	22.646	-0.18539					71	24	6	0	0	0	0.96309	1	738	738		45.022	12.272	1	2930000			86557	6243	60266	60365	96109	96109		260			-0.002502837824067683
VPQDLMLPSNP	11	Oxidation (M)	_VPQDLM(Oxidation (M))LPSNP_					0	0	1		ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.N288Kfs*12|1|0.07|ENSG00000151952|chr12:129699914-129699914|G/-|frameshift_variant;TMEM132D|p.R566Afs*15|1|0.26|ENSG00000151952|chr12:129081986-129081986|G/-|frameshift_variant	ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	409.541034	1225.60127	0.13635	5.584E-05	2.6535	0.0010867	2.7898	0.0011426	409.5419202639103	21.941	0.2411	21.865	21.698	21.939	-0.075296	-0.030254	-0.00055654	NaN	45.022	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7155.7			86558	6243	60266	60365				260			-0.002502837824067683
VPQDYLLS	8	Unmodified	_VPQDYLLS_					0	0	0			REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	REV__MAP10|p.I837Tfs*7|1|0.12|ENSG00000212916|chr1:232807532-232807533|-/CATGGACT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	468.2693176269531	2	467.74765	933.480748	0.030027	1.4045E-05	2.3604	0.0011041	2.3904	0.0011181	467.7483271711835	43.123	0.87107	42.983	42.595	43.466	-0.13929					50	23	5	0	0	0	0.027866	1	3998	3998		12.207	0	1	675350	+		86559	28722	60267	60366	96110	96110					0.011346762862785909
VPQLFFPPL	9	Unmodified	_VPQLFFPPL_					0	0	0			REV__nc|ENSG00000135503|P36896-3|ACVR1B	REV__nc|ENSG00000135503|P36896-3|ACVR1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.309326171875	2	529.307678	1056.6008	-0.29132	-0.0001542	3.4042	0.0018018	3.1128	0.0016477	529.3095205123531	29.03	0.78307	29.109	28.824	29.607	0.078344					43	19	4	0	0	0	0.96121	1	1716	1716		28.254	1.5614	1	2626500	+		86560	36689	60268	60367	96111	96111					0.07476709350703459
VPQLQQLL	8	Unmodified	_VPQLQQLL_					0	0	0			REV__ENST00000412676.5_1_12:108686098-108686329:-|nuORF	REV__ENST00000412676.5_1_12:108686098-108686329:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.7691650390625	2	469.78711	937.559667	-0.011659	-5.4774E-06	-2.2399	-0.0010523	-2.2515	-0.0010577	469.78582299088737	64.723	0.49026	64.769	64.525	65.015	0.045502					20	12	2	0	0	0	0.027866	1	7580	7580		26.796	0	1	182030	+		86561	32005	60269	60368	96112	96112					0.08838948311222339
VPQLSKTNKKA	11	Unmodified	_VPQLSKTNKKA_					0	0	0			REV__MYPN|p.P868L|1|0.38|ENSG00000138347|chr10:68175361-68175361|C/T|missense_variant	REV__MYPN|p.P868L|1|0.38|ENSG00000138347|chr10:68175361-68175361|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.8876953125	3	405.24695	1212.71902	0.039291	1.5922E-05	1.2994	0.00052656	1.3386	0.00054248	405.24743102614497	22.344	1.1254	22.142	21.76	22.886	-0.20199					52	23	3	0	0	0	0.024751	1	796	796		21.78	1.4654	1	84938	+		86562	36415	60270	60369	96113	96113					0.12117036868539799
VPQPPPAPVT	10	Unmodified	_VPQPPPAPVT_					0	0	0			REV__ENST00000472677.1_1_22:50636123-50636456:+|nuORF	REV__ENST00000472677.1_1_22:50636123-50636456:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.29217529296875	2	501.784567	1001.55458	-0.75828	-0.0003805	-2.6865	-0.0013481	-3.4448	-0.0017285	501.78308912256927	45.403	0.58909	45.192	44.793	45.382	-0.21109					22	16	2	0	0	0	0.03519	1	4314	4314		26.693	0	1	499460	+		86563	33215	60271	60370	96114	96114					0.05386644448606148
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7721252441406	2	477.771991	953.529429	-0.25948	-0.00012397	-0.026067	-1.2454E-05	-0.28555	-0.00013643	477.772021227986	36.012	1.0432	36.012	35.57	36.613	0					73	28	4	0	0	0	0.10464	3	2814	2792;2814;2826		109.48	7.7072	1	13201000			86564	4506	60272	60371	96115;96116;96117	96116					0.05080589646047429
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.7720947265625	2	477.771991	953.529429	-0.77902	-0.00037219	0.42221	0.00020172	-0.35681	-0.00017047	477.77225077184926	35.854	1.1251	35.811	35.366	36.491	-0.042454					77	30	4	0	0	0	0.053401	2	2798	2786;2798		127.46	8.7186	1	12226000			86565	4506	60272	60371	96118;96119	96119					0.05080589646047429
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7720947265625	2	477.771991	953.529429	-0.3491	-0.00016679	-0.017623	-8.4197E-06	-0.36673	-0.00017521	477.7720598711402	35.906	1.6269	35.95	35.497	37.123	0.04406					94	43	5	0	0	0	0.053401	3	2752	2719;2741;2752		127.46	14.05	1	12415000			86566	4506	60272	60371	96120;96121;96122	96122					0.05080589646047429
VPQPSGTRL	9	Unmodified	_VPQPSGTRL_					0	0	0			REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.7724914550781	2	477.771991	953.529429	-0.25948	-0.00012397	-0.026067	-1.2454E-05	-0.28555	-0.00013643	477.772021227986	36.012	1.0432	36.012	35.57	36.613	0					73	28	4	0	0	0	0.26966	1	2802	2802		79.713	2.395	1	13201000	+		86567	35507	60273	60372	96123	96123					0.05080589646047429
VPQPSGTRL	9	Unmodified	_VPQPSGTRL_					0	0	0			REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.77215576171875	2	477.771991	953.529429	-0.77902	-0.00037219	0.42221	0.00020172	-0.35681	-0.00017047	477.77225077184926	35.854	1.1251	35.811	35.366	36.491	-0.042454					77	30	4	0	0	0	0.16638	3	2774	2752;2762;2774		95.815	2.6719	1	12226000	+		86568	35507	60273	60372	96124;96125;96126	96126					0.05080589646047429
VPQPSGTRL	9	Unmodified	_VPQPSGTRL_					0	0	0			REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.7724304199219	2	477.771991	953.529429	-0.3491	-0.00016679	-0.017623	-8.4197E-06	-0.36673	-0.00017521	477.7720598711402	35.906	1.6269	35.95	35.497	37.123	0.04406					94	43	5	0	0	0	0.14024	2	2729	2729;2766		101.6	2.9713	1	12415000	+		86569	35507	60273	60372	96127;96128	96127					0.05080589646047429
VPQPSHHGVPL	11	Unmodified	_VPQPSHHGVPL_					0	0	0		ENST00000568886.5_1_16:70731059-70731143:-|nuORF	ENST00000568886.5_1_16:70731059-70731143:-|nuORF	ENST00000568886.5_1_16:70731059-70731143:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.3187255859375	2	584.317097	1166.61964	-1.027	-0.00060009	3.6177	0.0021139	2.5907	0.0015138	584.319098049708	49.237	0.81818	49.311	49.022	49.84	0.074192					58	21	4	0	0	0	0.63824	1	5017	5017		67.494	5.3863	1	3803800			86570	16995	60274	60373	96129	96129					0.042996389744757835
VPQPVNGEI	9	Unmodified	_VPQPVNGEI_					0	0	0		nc|ENSG00000133794|O00327-9|BMAL1;nc|ENSG00000133794|O00327-1|BMAL1;nc|ENSG00000133794|O00327-7|BMAL1;nc|ENSG00000133794|O00327-8|BMAL1;ENSG00000133794|ENST00000403290|BMAL1;nc|ENSG00000133794|O00327-6|BMAL1	nc|ENSG00000133794|O00327-9|BMAL1	nc|ENSG00000133794|O00327-9|BMAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.7579650878906	2	476.758549	951.502546	0.34901	0.00016639	-1.4907	-0.00071071	-1.1417	-0.00054432	476.75772494847956	103.11	2.084	103.12	102.24	104.32	0.0054245					130	51	5	0	0	0	0.62163	1	13190	13190		51.335	6.8044	1	5192800			86571	4730	60275	60374	96130	96130					0.024854810348642786
VPQPVNGEI	9	Unmodified	_VPQPVNGEI_					0	0	0		nc|ENSG00000133794|O00327-9|BMAL1;nc|ENSG00000133794|O00327-1|BMAL1;nc|ENSG00000133794|O00327-7|BMAL1;nc|ENSG00000133794|O00327-8|BMAL1;ENSG00000133794|ENST00000403290|BMAL1;nc|ENSG00000133794|O00327-6|BMAL1	nc|ENSG00000133794|O00327-9|BMAL1	nc|ENSG00000133794|O00327-9|BMAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.75787353515625	2	476.758549	951.502546	0.37525	0.0001789	-1.4768	-0.00070408	-1.1016	-0.00052517	476.75772866248496	103.18	1.7611	103.17	102.42	104.18	-0.0046005					112	42	4	0	0	0	0.70186	1	13168	13168		45.952	3.5558	1	4565500			86572	4730	60275	60374	96131	96131					0.024854810348642786
VPQQLVRLQ	9	Unmodified	_VPQQLVRLQ_					0	0	0			REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8316040039062	2	540.82984	1079.64513	-0.96112	-0.0005198	3.7469	0.0020264	2.7858	0.0015066	540.8319401282896	75.55	1.8781	75.305	74.918	76.797	-0.24455					176	48	6	0	0	0	0.67308	1	9257	9257		47.916	3.7988	1	94452000	+		86573	28855	60276	60375	96132	96132					0.10849113496919927
VPQSQPIKL	9	Unmodified	_VPQSQPIKL_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.78521728515625	2	505.305667	1008.59678	-0.022538	-1.1389E-05	0.5427	0.00027423	0.52016	0.00026284	505.3060471945831	63.986	0.46944	63.734	63.553	64.023	-0.25141					18	12	2	0	0	0	0.024397	1	7509	7509		24.519	10.382	1	121010			86574	7118	60277	60376	96133	96133					0.09282619856992369
VPQVKASAL	9	Unmodified	_VPQVKASAL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	456.77862548828125	2	456.779285	911.544017	0.20313	9.2785E-05	0.1475	6.7373E-05	0.35062	0.00016016	456.7790753805476	42.879	0.79814	42.879	42.642	43.44	0					48	21	4	0	0	0	0.086035	1	3982	3982		115.49	16.865	1	3022800			86575	1268	60278	60377	96134	96134					0.08470661794183343
VPQVKASAL	9	Unmodified	_VPQVKASAL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.77801513671875	2	456.779285	911.544017	0.61014	0.0002787	-0.3521	-0.00016083	0.25805	0.00011787	456.77891276212273	42.959	0.8359	42.99	42.722	43.558	0.030827					48	22	4	0	0	0	0.14024	1	3931	3931		101.6	2.9713	1	3358000			86576	1268	60278	60377	96135	96135					0.08470661794183343
VPQVKASAL	9	Unmodified	_VPQVKASAL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.779285	911.544017	0.027397	1.2514E-05	0.15615	7.1327E-05	0.18355	8.3842E-05	456.7791375799992	43.034	0.5593	42.921	42.693	43.253	-0.11253	-0.011508	-5.9074E-05	NaN	115.49	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897390			86577	1268	60278	60377							0.08470661794183343
VPQVKASAL	9	Unmodified	_VPQVKASAL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	456.779285	911.544017	-0.36073	-0.00016478	0.29999	0.00013703	-0.060747	-2.7748E-05	456.7793013275607	43.164	0.64384	42.927	42.639	43.282	-0.23737	-0.0061452	7.2327E-05	NaN	115.49	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	865690			86578	1268	60278	60377							0.08470661794183343
VPQVKASAL	9	Unmodified	_VPQVKASAL_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	456.779285	911.544017	-0.64727	-0.00029566	0.51443	0.00023498	-0.13285	-6.0682E-05	456.77936499107085	43.203	0.52225	42.977	42.753	43.275	-0.22597	0.043737	0.00026823	NaN	115.49	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	979530			86579	1268	60278	60377							0.08470661794183343
VPRAARGL	8	Unmodified	_VPRAARGL_					0	0	0		ENST00000227638.7_1_11:93862184-93862406:+|nuORF	ENST00000227638.7_1_11:93862184-93862406:+|nuORF	ENST00000227638.7_1_11:93862184-93862406:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	420.2403259277344	2	420.264136	838.51372	0.18023	7.5744E-05	-0.12189	-5.1228E-05	0.058336	2.4517E-05	420.26453767143425	37.177	0.41487	37.209	37.035	37.45	0.032269					15	10	2	0	0	0	0.027866	1	2956	2956		33.516	9.3128	1	105520			86580	11213	60279	60378	96136	96136					0.08800347919645901
VPRADRSL	8	Unmodified	_VPRADRSL_					0	0	0		ENST00000246868.6_1_7:66460413-66460524:-|nuORF	ENST00000246868.6_1_7:66460413-66460524:-|nuORF	ENST00000246868.6_1_7:66460413-66460524:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.26416015625	2	457.264333	912.514114	0.383	0.00017513	-0.35618	-0.00016287	0.026819	1.2263E-05	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	0.99042	1	9638	9638		38.806	0	1	4505400			86581	11323	60280	60379	96137	96137					0.054357228488470355
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.3162536621094	2	498.316035	994.617516	-0.095564	-4.7621E-05	0.067832	3.3802E-05	-0.027732	-1.3819E-05	498.31597281983875	67.034	1.0368	67.034	66.755	67.792	0					61	25	3	0	0	0	0.17822	3	7996	7985;7996;8024		93.195	8.2799	1	5407000			86582	9840;10932	60281	60380	96138;96139;96140	96139					0.11999210236660929
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.3158874511719	2	498.316035	994.617516	-0.24957	-0.00012436	0.11946	5.9531E-05	-0.13011	-6.4834E-05	498.3159611320506	67.4	0.95669	67.112	66.791	67.748	-0.28834					65	23	5	0	0	0	0.15366	2	8000	8000;8023		98.629	8.2596	1	5679900			86583	9840;10932	60281	60380	96141;96142	96141					0.11999210236660929
VPRALAGR	8	Unmodified	_VPRALAGR_					0	0	0			REV__nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	REV__nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2405700683594	2	420.264136	838.51372	0.32002	0.00013449	2.298	0.00096575	2.618	0.0011002	420.26489738820135	37.21	0.21826	37.146	37.014	37.232	-0.063385					7	5	2	0	0	0	0.027866	1	3013	3013		18.324	0	1	105250	+		86584	25332	60282	60381	96143	96143					0.0880034791965727
VPRAPSGAVL	10	Unmodified	_VPRAPSGAVL_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4;EPHB4|p.A636Pfs*14|1|0.34|ENSG00000196411|chr7:100812959-100812959|C/-|frameshift_variant;nc|ENSG00000196411|P54760-2|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.79022216796875	2	483.790184	965.565815	-0.049389	-2.3894E-05	-0.69177	-0.00033467	-0.74116	-0.00035856	483.7898328084128	45.911	1.6573	45.911	45.31	46.967	0					115	46	4	0	0	0	0.47897	3	4496	4484;4496;4509		90.601	20.973	1	22718000			86585	9869	60283	60382	96144;96145;96146	96145					0.08165466542754984
VPRAPSGAVL	10	Unmodified	_VPRAPSGAVL_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4;EPHB4|p.A636Pfs*14|1|0.34|ENSG00000196411|chr7:100812959-100812959|C/-|frameshift_variant;nc|ENSG00000196411|P54760-2|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.7893981933594	2	483.790184	965.565815	-0.89839	-0.00043463	0.22188	0.00010734	-0.67651	-0.00032729	483.79028072148355	45.957	1.843	45.805	45.211	47.054	-0.15156					113	51	5	0	0	0	0.32213	4	4489	4469;4489;4503;4514		106.68	28.419	1	22498000			86586	9869	60283	60382	96147;96148;96149;96150	96148					0.08165466542754984
VPRAPSGAVL	10	Unmodified	_VPRAPSGAVL_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4;EPHB4|p.A636Pfs*14|1|0.34|ENSG00000196411|chr7:100812959-100812959|C/-|frameshift_variant;nc|ENSG00000196411|P54760-2|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7900390625	2	483.790184	965.565815	-0.44872	-0.00021709	-0.16439	-7.953E-05	-0.61311	-0.00029662	483.7900962984872	45.834	1.9065	45.878	45.11	47.016	0.043877					125	54	4	0	0	0	0.56936	3	4440	4405;4427;4440		80.455	19.482	1	24231000			86587	9869	60283	60382	96151;96152;96153	96153					0.08165466542754984
VPRASGAPVL	10	Unmodified	_VPRASGAPVL_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.79022216796875	2	483.790184	965.565815	-0.89839	-0.00043463	0.22188	0.00010734	-0.67651	-0.00032729	483.79028072148355	45.957	1.843	45.805	45.211	47.054	-0.15156					113	51	5	0	0	0	0.72729	1	4478	4478		65.465	0	1	22498000	+		86588	28858	60284	60383	96154	96154					0.08165466542754984
VPRASGAPVL	10	Unmodified	_VPRASGAPVL_					0	0	0			REV__nc|ENSG00000244731|P0C0L4-2|C4A	REV__nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.7900390625	2	483.790184	965.565815	-0.44872	-0.00021709	-0.16439	-7.953E-05	-0.61311	-0.00029662	483.7900962984872	45.834	1.9065	45.878	45.11	47.016	0.043877					125	54	4	0	0	0	0.72729	1	4452	4452		65.465	0	1	24231000	+		86589	28858	60284	60383	96155	96155					0.08165466542754984
VPRCGQGTLL	10	Unmodified	_VPRCGQGTLL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.8126220703125	2	522.286951	1042.55935	-0.39583	-0.00020674	-3.2424	-0.0016934	-3.6382	-0.0019002	522.2863546227634	41.426	0.1423	41.426	41.326	41.469	0					5	3	2	0	0	0	0.03519	1	3734	3734		10.866	5.6454	1	31528			86590	18142	60285	60384	96156	96156					0.03977205319733912
VPRDKRLL	8	Unmodified	_VPRDKRLL_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;nc|ENSG00000083307|Q6ISB3-2|GRHL2;C12orf52-GRHL2|1|fusion	ENSG00000083307|ENST00000646743|GRHL2	ENSG00000083307|ENST00000646743|GRHL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.27471923828125	2	498.819276	995.623999	1.0436	0.00052057	-1.0724	-0.00053496	-0.02883	-1.4381E-05	498.8186573331889	20.146	0.53069	19.949	19.753	20.284	-0.19759					22	10	3	0	0	0	0.027866	1	515	515		29.15	0	1	103050			86591	1750	60286	60385	96157	96157					0.1260114818803686
VPRDKRLL	8	Unmodified	_VPRDKRLL_					0	0	0		ENSG00000083307|ENST00000646743|GRHL2;nc|ENSG00000083307|Q6ISB3-2|GRHL2;C12orf52-GRHL2|1|fusion	ENSG00000083307|ENST00000646743|GRHL2	ENSG00000083307|ENST00000646743|GRHL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	498.819276	995.623999	-0.077724	-3.877E-05	0.18818	9.3866E-05	0.11045	5.5096E-05	498.81913778024654	20.101	0.62729	19.933	19.718	20.345	-0.16774	-0.026346	0.00067643	NaN	29.15	29	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136500			86592	1750	60286	60385							0.1260114818803686
VPRDRALLAG	10	Unmodified	_VPRDRALLAG_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;EXT2|p.G215S|1|0.24|ENSG00000151348|chr11:44114201-44114201|G/A|missense_variant;ENST00000529186.1_1_11:44129577-44137613:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.3192749023438	2	534.31964	1066.62473	0.61288	0.00032747	-0.94869	-0.0005069	-0.33581	-0.00017943	534.3190764759476	19.243	0.68908	19.243	18.774	19.463	0					30	13	4	0	0	0	1.0002	1	392	392		45.972	6.7194	1	152810			86593	6197	60287	60386	96158	96158					0.09407942837083283
VPRDRRPRHRD	11	Unmodified	_VPRDRRPRHRD_					0	0	0			REV__ENST00000522759.1_1_8:21986032-21988020:-|nuORF	REV__ENST00000522759.1_1_8:21986032-21988020:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.2921142578125	3	487.274896	1458.80286	0.29562	0.00014405	3.2995	0.0016078	3.5951	0.0017518	487.2763364971675	59.825	0.62938	59.577	59.17	59.8	-0.24842					43	15	4	0	0	0	0.024886	1	6645	6645		3.4087	0.19739	1	307110	+		86594	34344	60288	60387	96159	96159					0.09181005808818554
VPRDSLLPL	9	Unmodified	_VPRDSLLPL_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.7847900390625	2	505.305667	1008.59678	0.57764	0.00029188	2.6505	0.0013393	3.2281	0.0016312	505.3068285381818	98.712	0.86554	98.708	98.39	99.256	-0.0038834					42	19	3	0	0	0	0.024436	1	12499	12499		38.806	15.764	1	166040			86595	4209	60289	60388	96160	96160					0.09282619856992369
VPRDSLLPL	9	Unmodified	_VPRDSLLPL_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.305667	1008.59678	0.12183	6.1559E-05	3.1886	0.0016112	3.3104	0.0016728	505.3070420138957	98.626	0.68656	98.636	98.315	99.001	0.010239	0.086503	0.00043141	NaN	30.504	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141150			86596	4209	60289	60388							0.09282619856992369
VPRDSLLPL	9	Unmodified	_VPRDSLLPL_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.305667	1008.59678	0.74894	0.00037844	2.1518	0.0010873	2.9007	0.0014657	505.30630243117247	98.6	0.44617	98.464	98.19	98.636	-0.13626	-0.086077	-0.00061644	NaN	30.504	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49509			86597	4209	60289	60388							0.09282619856992369
VPRDSLLPL	9	Unmodified	_VPRDSLLPL_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.305667	1008.59678	1.0598	0.0005355	1.6442	0.00083085	2.704	0.0013663	505.3062491685147	98.508	0.39175	98.383	98.154	98.546	-0.12414	-0.16651	-0.0011293	NaN	30.504	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51857			86598	4209	60289	60388							0.09282619856992369
VPREPPVSL	9	Unmodified	_VPREPPVSL_					0	0	0		ENSG00000165282|ENST00000378617|PIGO;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF	ENSG00000165282|ENST00000378617|PIGO	ENSG00000165282|ENST00000378617|PIGO	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.28961181640625	2	497.290017	992.565481	-0.24273	-0.0001207	-0.4837	-0.00024054	-0.72643	-0.00036125	497.2896244608905	50.951	0.83764	50.802	50.46	51.298	-0.14915					79	23	4	0	0	0	0.2101	3	5360	5349;5360;5387		87.696	24.39	1	5172000			86599	7392	60290	60389	96161;96162;96163	96162					0.06890046822900331
VPREPPVSL	9	Unmodified	_VPREPPVSL_					0	0	0		ENSG00000165282|ENST00000378617|PIGO;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF	ENSG00000165282|ENST00000378617|PIGO	ENSG00000165282|ENST00000378617|PIGO	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.29034423828125	2	497.290017	992.565481	-0.40679	-0.00020229	-0.45918	-0.00022834	-0.86596	-0.00043064	497.2896351910866	50.644	0.91385	50.725	50.344	51.258	0.08099					81	25	4	0	0	0	0.28753	2	5257	5257;5294		77.318	16.346	1	4645900			86600	7392	60290	60389	96164;96165	96164					0.06890046822900331
VPRERVLV	8	Unmodified	_VPRERVLV_					0	0	0			REV__ENST00000586869.5_1_17:33458867-33458993:-|nuORF	REV__ENST00000586869.5_1_17:33458867-33458993:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.79022216796875	2	484.306001	966.597449	-0.8763	-0.0004244	-1.875	-0.00090806	-2.7513	-0.0013325	484.3048122016125	45.924	0.30838	45.773	45.611	45.92	-0.15156					14	8	2	0	0	0	0.027866	1	4478	4478		14.865	0	1	175550	+		86601	35610	60291	60390	96166	96166					0.11281459296719731
VPRFLKQIFPR	11	Unmodified	_VPRFLKQIFPR_					0	0	0			REV__ENST00000476518.1_1_6:106649790-106727677:-|nuORF	REV__ENST00000476518.1_1_6:106649790-106727677:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	467.6238708496094	3	467.622351	1399.84522	0.98972	0.00046281	2.0095	0.0009397	2.9992	0.0014025	467.6232186790615	106.95	0.65829	106.95	106.77	107.43	0					56	18	5	0	0	0	1.0621	1	13740	13740		21.78	2.8141	1	698760	+		86602	20223	60292	60391	96167	96167					0.16129588164494635
VPRFNDSMS	9	Unmodified	_VPRFNDSMS_					0	0	0			REV__nc|ENSG00000154975|Q9NS85-2|CA10	REV__nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.74658203125	2	526.745116	1051.47568	-1.2931	-0.00068113	3.7838	0.0019931	2.4907	0.001312	526.7471312288836	31.488	1.2063	31.488	31.173	32.379	0					87	29	5	0	0	0	0.70186	1	2137	2137		45.952	3.0877	1	8613400	+		86603	24985	60293	60392	96168	96168					-0.04799950847973378
VPRFNDSMS	9	Unmodified	_VPRFNDSMS_					0	0	0			REV__nc|ENSG00000154975|Q9NS85-2|CA10	REV__nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.7464599609375	2	526.745116	1051.47568	-0.52	-0.00027391	2.7072	0.001426	2.1872	0.0011521	526.7467088338344	31.429	1.2156	31.44	31.084	32.299	0.011797					94	29	6	0	0	0	0.55828	1	2108	2108		55.504	11.127	1	9216400	+		86604	24985	60293	60392	96169	96169					-0.04799950847973378
VPRGDRTL	8	Unmodified	_VPRGDRTL_					0	0	0			REV__nc|ENSG00000102032|P51606-2|RENBP	REV__nc|ENSG00000102032|P51606-2|RENBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2641906738281	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	0.99042	1	9679	9679		38.806	0	1	3503800	+		86605	21278	60294	60393	96170	96170					0.05435722848869773
VPRGRVGLVLF	11	Unmodified	_VPRGRVGLVLF_					0	0	0			REV__ENST00000401813.7_1_1:2130502-2130631:-|nuORF	REV__ENST00000401813.7_1_1:2130502-2130631:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.92291259765625	3	404.92403	1211.75026	0.50474	0.00020438	-4.1157	-0.0016666	-3.611	-0.0014622	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.0499	1	1421	1421		25.126	0	1	35253000	+		86606	31863	60295	60394	96171	96171					0.15285654693320794
VPRGSGNTV	9	Unmodified	_VPRGSGNTV_					0	0	0		nc|ENSG00000198276|Q9NWZ5-2|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1	nc|ENSG00000198276|Q9NWZ5-2|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1	nc|ENSG00000198276|Q9NWZ5-3|UCKL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	443.74072265625	2	443.740691	885.466829	-0.28205	-0.00012516	0.15181	6.7365E-05	-0.13023	-5.779E-05	443.7407610524949	22.455	1.5106	22.455	22.012	23.523	0					97	33	5	0	0	0	0.16638	3	785	785;797;810		95.815	18.969	1	3563400			86607	18647;18646	60296	60395	96172;96173;96174	96172					0.0195144357786603
VPRGSGNTV	9	Unmodified	_VPRGSGNTV_					0	0	0		nc|ENSG00000198276|Q9NWZ5-2|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1	nc|ENSG00000198276|Q9NWZ5-2|UCKL1;nc|ENSG00000198276|Q9NWZ5-3|UCKL1	nc|ENSG00000198276|Q9NWZ5-3|UCKL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	443.7407531738281	2	443.740691	885.466829	-0.10707	-4.7513E-05	0.26842	0.00011911	0.16134	7.1594E-05	443.74071178635825	22.56	1.1415	22.484	22.035	23.176	-0.075294					60	24	4	0	0	0	0.14024	2	799	788;799		101.6	32.559	1	1230600			86608	18647;18646	60296	60395	96175;96176	96176					0.0195144357786603
VPRHIGSGGAQ	11	Unmodified	_VPRHIGSGGAQ_					0	0	0			REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	REV__nc|ENSG00000052749|Q5JTH9-2|RRP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.787841796875	2	539.791247	1077.56794	-1.1314	-0.0006107	-1.889	-0.0010197	-3.0204	-0.0016304	539.7900164000199	57.33	0.71268	57.425	57.088	57.801	0.095306					35	18	3	0	0	0	0.87596	1	6378	6378		53.089	0	1	4246600	+		86609	20173	60297	60396	96177	96177					0.03225895280570512
VPRHRRRSAS	10	Unmodified	_VPRHRRRSAS_					0	0	0			REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3558959960938	2	611.355411	1220.69627	-1.352	-0.00082658	2.5765	0.0015752	1.2245	0.00074859	611.3568681826239	94.209	2.8904	94.215	93.307	96.198	0.0059814					272	68	6	0	0	0	1.089	2	11860	11860;11885		34.173	6.0911	1	11699000	+		86610	29459	60298	60397	96178;96179	96178					0.09474875314322162
VPRHRRRSAS	10	Unmodified	_VPRHRRRSAS_					0	0	0			REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.3557739257812	2	611.355411	1220.69627	0.14542	8.89E-05	1.1604	0.00070941	1.3058	0.00079831	611.3559922545609	94.334	3.2528	94.212	93.41	96.663	-0.12215					281	75	6	0	0	0	1.1307	1	11577	11577		26.693	0	1	13233000	+		86611	29459	60298	60397	96180	96180					0.09474875314322162
VPRHRRRSAS	10	Unmodified	_VPRHRRRSAS_					0	0	0			REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3548583984375	2	611.355411	1220.69627	-0.19635	-0.00012004	1.049	0.00064132	0.85267	0.00052128	611.3559482154913	92.56	2.8658	92.419	90.532	93.398	-0.1413					192	67	4	0	0	0	1.1286	1	11414	11414		25.574	0.12388	1	5237500	+		86612	29459	60298	60397	96181	96181					0.09474875314322162
VPRIGRSA	8	Unmodified	_VPRIGRSA_					0	0	0			REV__ENSG00000071677|ENST00000165524|PRLH	REV__ENSG00000071677|ENST00000165524|PRLH	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2618103027344	2	428.261594	854.508634	-0.84173	-0.00036048	1.3058	0.00055924	0.46411	0.00019876	428.2622543446815	90.008	2.3786	90.008	89.481	91.86	0					210	56	6	0	0	0	1.0009	2	11420	11337;11420		37.159	1.5408	1	86056000	+		86613	20452	60299	60398	96182;96183	96183					0.0755604405703707
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.3084716796875	2	519.308741	1036.60293	-0.20804	-0.00010804	-0.65153	-0.00033835	-0.85957	-0.00044638	519.3083193963904	49.076	0.93576	49.076	48.795	49.731	0					66	25	4	0	0	0	0.1158	1	5054	5054		107.01	7.6326	1	7141900			86614	648	60300	60399	96184	96184					0.08609138088513646
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.3084716796875	2	519.308741	1036.60293	-0.34532	-0.00017933	-0.57083	-0.00029644	-0.91615	-0.00047577	519.3083780795426	49.32	1.2674	49.167	48.829	50.097	-0.15277					74	34	4	0	0	0	0.027092	3	5071	5061;5071;5086		143.89	19.292	1	6730200			86615	648	60300	60399	96185;96186;96187	96186					0.08609138088513646
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.3084716796875	2	519.308741	1036.60293	-1.4697	-0.00076322	0.62143	0.00032271	-0.84826	-0.00044051	519.3089843045811	49.014	1.1054	49.088	48.772	49.877	0.074192					71	29	4	0	0	0	0.027092	2	4987	4973;4987		143.89	33.767	1	6039000			86616	648	60300	60399	96188;96189	96189					0.08609138088513646
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	519.308741	1036.60293	-0.76328	-0.00039638	-0.19618	-0.00010188	-0.95946	-0.00049826	519.3085617110867	49.123	0.42243	49.022	48.803	49.226	-0.1008	-0.075564	0.0002119	NaN	143.89	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353340			86617	648	60300	60399							0.08609138088513646
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.308741	1036.60293	0.11918	6.1891E-05	-1.3289	-0.00069011	-1.2097	-0.00062822	519.3080185826298	49.447	0.45515	49.167	48.825	49.28	-0.27977	0.069013	-0.00096457	NaN	143.89	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232690			86618	648	60300	60399							0.08609138088513646
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	DNAAF2|p.A713Sfs*3|1|0.19|ENSG00000165506|chr14:49625920-49625921|-/A|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.308741	1036.60293	0.064177	3.3328E-05	-1.1803	-0.00061292	-1.1161	-0.00057959	519.3079630761803	49.249	0.42076	49.066	48.845	49.266	-0.18206	-0.031287	-0.00081018	NaN	143.89	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319360			86619	648	60300	60399							0.08609138088513646
VPRITGEP	8	Unmodified	_VPRITGEP_					0	0	0			REV__ENST00000455605.2_1_6:43488011-43488227:+|nuORF	REV__ENST00000455605.2_1_6:43488011-43488227:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.7303466796875	2	434.747985	867.481417	-1.3121	-0.00057042	-0.64391	-0.00027994	-1.956	-0.00085036	434.7487420228106	38.268	0.33997	38.295	38.057	38.397	0.027279					12	9	2	0	0	0	0.027866	1	3143	3143		31.955	0	1	55463	+		86620	26566	60301	60400	96190	96190					0.04237515726003949
VPRKEGAIAS	10	Unmodified	_VPRKEGAIAS_					0	0	0		ENST00000329421.7_1_1:32799996-32800179:-|nuORF	ENST00000329421.7_1_1:32799996-32800179:-|nuORF	ENST00000329421.7_1_1:32799996-32800179:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.2982177734375	2	514.298373	1026.58219	-0.24512	-0.00012606	-0.23753	-0.00012216	-0.48264	-0.00024822	514.2980950801538	95.286	1.1712	95.149	94.723	95.894	-0.13689					65	26	4	0	0	0	1.1088	1	11762	11762		31.53	0	1	1439900			86621	12319	60302	60401	96191	96191					0.06996547708831713
VPRKEGAIAS	10	Unmodified	_VPRKEGAIAS_					0	0	0		ENST00000329421.7_1_1:32799996-32800179:-|nuORF	ENST00000329421.7_1_1:32799996-32800179:-|nuORF	ENST00000329421.7_1_1:32799996-32800179:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	514.2982788085938	2	514.298373	1026.58219	-0.26021	-0.00013383	-0.61526	-0.00031643	-0.87547	-0.00045025	514.2978037910609	95.323	1.1741	95.171	94.667	95.842	-0.15186					65	26	4	0	0	0	1.0992	1	11748	11748		32.812	2.4947	1	1560600			86622	12319	60302	60401	96192	96192					0.06996547708831713
VPRKPGVF	8	Unmodified	_VPRKPGVF_					0	0	0		ENST00000519685.5_1_8:22873179-22874852:+|nuORF	ENST00000519685.5_1_8:22873179-22874852:+|nuORF	ENST00000519685.5_1_8:22873179-22874852:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.274658203125	2	450.276712	898.538872	-1.3767	-0.00061991	-4.1096	-0.0018504	-5.4863	-0.0024704	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0133	1	11294	11294		35.201	6.0512	1	56225000			86623	15959	60303	60402	96193	96193					0.08554402722234045
VPRKTKDN	8	Unmodified	_VPRKTKDN_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.27740478515625	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	1.0133	3	9993	9993;10077;10223		35.201	3.2459	1	7158600	+		86624	22062	60304	60403	96194;96195;96196	96194					0.06031992020314192
VPRLAGRA	8	Unmodified	_VPRLAGRA_					0	0	0		ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	ENST00000607967.1_1_10:104402974-104403835:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.240478515625	2	420.264136	838.51372	0.8316	0.00034949	2.6906	0.0011308	3.5222	0.0014803	420.2647273245716	37.356	0.40308	37.356	37.12	37.523	0					15	10	2	0	0	0	0.027866	1	3017	3017		28.254	0	1	54427			86625	17585	60305	60404	96197	96197					0.0880034791965727
VPRLKSSDK	9	Unmodified	_VPRLKSSDK_					0	0	0			REV__nc|ENSG00000164078|Q04912-2|MST1R	REV__nc|ENSG00000164078|Q04912-2|MST1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.3087158203125	2	515.306198	1028.59784	-1.0497	-0.00054093	3.7707	0.0019431	2.721	0.0014022	515.3079722876132	62.709	0.92925	62.709	62.335	63.265	0					33	18	2	0	0	0	0.62163	1	7293	7293		51.335	5.3632	1	5871200	+		86626	25687	60306	60405	96198	96198					0.08468834225891442
VPRLKSSDK	9	Unmodified	_VPRLKSSDK_					0	0	0			REV__nc|ENSG00000164078|Q04912-2|MST1R	REV__nc|ENSG00000164078|Q04912-2|MST1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3080444335938	2	515.306198	1028.59784	-0.45028	-0.00023203	3.259	0.0016794	2.8087	0.0014473	515.3077403903917	62.664	0.82809	62.727	62.483	63.311	0.062767					35	18	2	0	0	0	0.39228	1	7207	7207		66.429	2.222	1	6202100	+		86627	25687	60306	60405	96199	96199					0.08468834225891442
VPRLRRDT	8	Unmodified	_VPRLRRDT_					0	0	0		ENSG00000183760|ENST00000331256|ACP7	ENSG00000183760|ENST00000331256|ACP7	ENSG00000183760|ENST00000331256|ACP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.25518798828125	2	506.804157	1011.59376	-0.59775	-0.00030294	2.6045	0.0013199	2.0067	0.001017	506.80533782113525	61.726	0.59118	61.726	61.453	62.044	0					43	15	4	0	0	0	0.027866	1	7119	7119		18.324	0	1	1311100			86628	9270	60307	60406	96200	96200					0.08842789522839212
VPRLSLPGKLV	11	Unmodified	_VPRLSLPGKLV_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF	ENST00000545209.1_1_12:121202804-121206399:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.884616	1177.75468	-0.32689	-0.00019283	-4.4614	-0.0026317	-4.7883	-0.0028245	590.3825977889506	90.806	0.2543	90.667	90.449	90.704	-0.13897					6	5	2	0	0	0	0.024785	1	11090	11090		16.717	10.796	1	67653			86629	6623;16491	60308	60407	96201	96201					0.17291119116225673
VPRNAKFFKQR	11	Unmodified	_VPRNAKFFKQR_					0	0	0		ENSG00000139890|ENST00000267396|REM2	ENSG00000139890|ENST00000267396|REM2	ENSG00000139890|ENST00000267396|REM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	463.31329345703125	3	464.273722	1389.79934	1.9233	0.00089294	-3.9043	-0.0018127	-1.981	-0.00091971	464.2717971150212	19.087	0.49417	18.853	18.682	19.176	-0.23345					11	9	2	0	0	0	0.024851	1	364	364		14.086	0	1	16609			86630	5374	60309	60408	96202	96202					0.12002942982257991
VPRPAATAP	9	Unmodified	_VPRPAATAP_					0	0	0		ENST00000486847.2_1_19:12774617-12777525:-|nuORF	ENST00000486847.2_1_19:12774617-12777525:-|nuORF	ENST00000486847.2_1_19:12774617-12777525:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.2743835449219	2	440.255977	878.497401	0.50187	0.00022095	3.8659	0.001702	4.3678	0.0019229	440.25750907229036	42.89	0.10865	42.916	42.825	42.934	0.026012					4	2	2	0	0	0	0.024344	1	3916	3916		64.207	25.401	1	86809			86631	15354	60310	60409	96203	96203					0.05329221962892916
VPRPFMSTV	9	Unmodified	_VPRPFMSTV_					0	0	0		ENST00000489057.1_1_1:156453152-156469309:-|nuORF;ENST00000348159.8_1_1:156453152-156470609:-|nuORF	ENST00000489057.1_1_1:156453152-156469309:-|nuORF	ENST00000489057.1_1_1:156453152-156469309:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.8132934570312	2	517.278595	1032.54264	-0.33482	-0.00017319	-3.2594	-0.001686	-3.5942	-0.0018592	517.2768686165596	65.72	0.70345	65.447	65.055	65.758	-0.27282					39	19	3	0	0	0	0.024506	1	7698	7698		10.866	0	1	1057800			86632	12576	60311	60410	96204	96204					0.027667044337704283
VPRPGLHVTFV	11	Unmodified	_VPRPGLHVTFV_					0	0	0			REV__ENSG00000197408|ENST00000324071|CYP2B6	REV__ENSG00000197408|ENST00000324071|CYP2B6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3515625	2	611.358765	1220.70298	-1.2666	-0.00077434	-3.194	-0.0019527	-4.4606	-0.002727	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.0344	1	11769	11769		29.17	2.4771	1	3820300	+		86633	28300	60312	60411	96205	96205					0.10145375422325742
VPRPGLHVTFV	11	Unmodified	_VPRPGLHVTFV_					0	0	0			REV__ENSG00000197408|ENST00000324071|CYP2B6	REV__ENSG00000197408|ENST00000324071|CYP2B6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.353271484375	2	611.358765	1220.70298	-2.7988	-0.0017111	-1.7638	-0.0010783	-4.5626	-0.0027894	611.3575286656617	92.522	1.7327	92.379	91.617	93.35	-0.14356					150	40	4	0	0	0	1.0017	1	11332	11332		36.447	3.6343	1	4645400	+		86634	28300	60312	60411	96206	96206					0.10145375422325742
VPRPGLHVTFV	11	Unmodified	_VPRPGLHVTFV_					0	0	0			REV__ENSG00000197408|ENST00000324071|CYP2B6	REV__ENSG00000197408|ENST00000324071|CYP2B6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3565063476562	2	611.358765	1220.70298	-1.8096	-0.0011063	-2.4397	-0.0014915	-4.2494	-0.0025979	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.0119	1	11636	11636		34.173	1.3601	1	13060000	+		86635	28300	60312	60411	96207	96207					0.10145375422325742
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.74310302734375	2	413.742702	825.470852	1.2802	0.00052967	2.3447	0.00097012	3.6249	0.0014998	413.7422502710301	37.389	0.82632	37.389	37.042	37.869	0					65	22	5	0	0	0	0.27053	2	3045	3045;3057		124.59	21.453	1	3281900			86636	7429	60313	60412	96208;96209	96208					0.05113533071573784
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	413.7428283691406	2	413.742702	825.470852	0.46353	0.00019178	3.0466	0.0012605	3.5101	0.0014523	413.7425642011113	37.248	0.89775	37.185	36.828	37.725	-0.063389					72	24	5	0	0	0	0.21344	2	3005	3005;3021		138.24	37.031	1	2660500			86637	7429	60313	60412	96210;96211	96210					0.05113533071573784
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	413.7430114746094	2	413.742702	825.470852	0.15329	6.3423E-05	3.6597	0.0015142	3.8129	0.0015776	413.74267787695334	37.396	0.9573	37.428	37.035	37.992	0.032269					73	25	5	0	0	0	0.21344	2	2984	2984;2995		138.24	37.031	1	2490400			86638	7429	60313	60412	96212;96213	96212					0.05113533071573784
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	413.742702	825.470852	-0.28398	-0.00011749	0.54287	0.00022461	0.25889	0.00010711	413.74273713685267	37.863	0.32687	37.684	37.483	37.809	-0.17929	0.1694	-0.00088604	NaN	138.24	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130740			86639	7429	60313	60412							0.05113533071573784
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	413.742702	825.470852	-0.95875	-0.00039667	1.4342	0.00059339	0.47545	0.00019671	413.74298058503075	37.928	0.88362	37.706	37.269	38.153	-0.22149	0.19162	-0.00014848	NaN	138.24	26	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161020			86640	7429	60313	60412							0.05113533071573784
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF;nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	nc|ENSG00000165533|Q8TAM2-6|TTC8	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	413.742702	825.470852	-0.71978	-0.0002978	1.5309	0.00063339	0.8111	0.00033559	413.74284554238693	37.914	0.92049	37.696	37.263	38.184	-0.21848	0.18117	-6.8478E-05	NaN	138.24	42	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224370			86641	7429	60313	60412							0.05113533071573784
VPRPLWLGLL	10	Unmodified	_VPRPLWLGLL_					0	0	0			REV__ENSG00000110057|ENST00000227471|UNC93B1	REV__ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	582.3533935546875	2	582.368601	1162.72265	0.24529	0.00014285	1.1615	0.00067641	1.4068	0.00081926	582.3691182717324	102.3	0.1143	102.17	102.11	102.23	-0.12931					4	2	2	0	0	0	0.03519	1	12701	12701		15.642	0	1	28554	+		86642	21834	60314	60413	96214	96214					0.14779751433070487
VPRPNEPQF	9	Unmodified	_VPRPNEPQF_					0	0	0			REV__ENST00000373066.9_1_9:130854019-130854070:+|nuORF	REV__ENST00000373066.9_1_9:130854019-130854070:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.2833862304688	2	542.282723	1082.55089	-0.79107	-0.00042899	0.49169	0.00026664	-0.29938	-0.00016235	542.2829168601154	52.206	1.2024	52.022	51.634	52.836	-0.18405					66	28	4	0	0	0	0.50848	1	5430	5430		58.782	3.2778	1	5207400	+		86643	31231	60315	60414	96215	96215					0.012919746747684258
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.2560119628906	2	497.787641	993.56073	-0.9522	-0.00047399	0.50766	0.00025271	-0.44454	-0.00022129	497.78774369033033	43.911	2.4267	43.766	42.408	44.834	-0.14471					173	68	5	0	0	0	0.023473	1	4099	4099		75.043	23.708	1	7370200			86644	897	60316	60415	96216	96216					0.0636916268015284
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF	nc|ENSG00000011451|O95785-4|WIZ	nc|ENSG00000011451|O95785-4|WIZ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2558288574219	2	497.787641	993.56073	0.067824	3.3762E-05	-0.80096	-0.00039871	-0.73314	-0.00036495	497.78718645284636	43.761	1.3277	43.792	42.939	44.266	0.030827					84	36	3	0	0	0	0.023061	1	4042	4042		60.118	3.3972	1	7682800			86645	897	60316	60415	96217	96217					0.0636916268015284
VPRPPSNPP	9	Unmodified	_VPRPPSNPP_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.76800537109375	2	480.766709	959.518865	0.31574	0.0001518	-0.63117	-0.00030344	-0.31543	-0.00015165	480.76628466762816	36.666	1.8832	36.666	35.531	37.414	0					109	50	3	0	0	0	0.26966	2	2957	2917;2957		79.713	21.901	1	5909600			86646	1199	60317	60416	96218;96219	96219					0.03748606991609904
VPRPPSNPP	9	Unmodified	_VPRPPSNPP_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.767822265625	2	480.766709	959.518865	-0.45381	-0.00021818	0.045789	2.2014E-05	-0.40802	-0.00019616	480.7666361479519	36.568	1.8582	36.525	35.326	37.184	-0.042454					108	49	3	0	0	0	0.26966	3	2905	2843;2877;2905		79.713	31.797	1	5699900			86647	1199	60317	60416	96220;96221;96222	96222					0.03748606991609904
VPRPPSNPP	9	Unmodified	_VPRPPSNPP_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.7677001953125	2	480.766709	959.518865	-0.4943	-0.00023764	-0.428	-0.00020577	-0.9223	-0.00044341	480.766213553103	36.649	1.85	36.687	35.569	37.419	0.038044					129	49	3	0	0	0	0.2101	5	2890	2834;2844;2856;2868;2890		87.696	24.39	1	5721100			86648	1199	60317	60416	96223;96224;96225;96226;96227	96227					0.03748606991609904
VPRPQYFF	8	Unmodified	_VPRPQYFF_					0	0	0		ENST00000441302.6_1_3:39139094-39139295:-|nuORF	ENST00000441302.6_1_3:39139094-39139295:-|nuORF	ENST00000441302.6_1_3:39139094-39139295:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.2865600585938	2	527.279452	1052.54435	-1.4087	-0.00074276	0.79259	0.00041792	-0.61608	-0.00032485	527.2799063973694	60.708	0.82164	60.708	60.473	61.295	0					63	21	4	0	0	0	0.027866	1	6971	6971		37.028	24.822	1	1936100			86649	14357	60318	60417	96228	96228					0.02018081514052028
VPRPVLRAL	9	Unmodified	_VPRPVLRAL_					0	0	0		ENST00000555324.1_1_14:94545323-94547480:-|nuORF;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENSG00000089737|ENST00000621632|DDX24	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENST00000555324.1_1_14:94545323-94547480:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	510.83721923828125	2	510.837468	1019.66038	-0.3947	-0.00020163	0.36616	0.00018705	-0.028541	-1.458E-05	510.8374813166352	45.882	0.65356	45.93	45.651	46.305	0.047943					53	18	4	0	0	0	0.55828	1	4442	4442		55.504	0	1	2344100			86650	1914	60319	60418	96229	96229					0.15134025084751102
VPRQLTVTTT	10	Unmodified	_VPRQLTVTTT_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.3245849609375	2	558.324588	1114.63462	1.0696	0.00059718	-0.94284	-0.00052641	0.12675	7.0768E-05	558.3240449933329	98.769	1.2313	98.645	98.241	99.472	-0.12414					51	30	3	0	0	0	1.1286	1	12238	12238		25.574	0	1	217700	+		86651	20343	60320	60419	96230	96230					0.08189086051788763
VPRQPTVTSV	10	Unmodified	_VPRQPTVTSV_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3114013671875	2	542.31148	1082.60841	-0.38814	-0.00021049	0.31177	0.00016908	-0.07637	-4.1416E-05	542.3115185992551	40.551	0.90649	40.551	40.247	41.153	0					63	25	3	0	0	0	0.45418	1	3593	3593		93.143	10.903	1	5152800			86652	7036	60321	60420	96231	96231					0.07040816880339662
VPRQPTVTSV	10	Unmodified	_VPRQPTVTSV_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3116455078125	2	542.31148	1082.60841	0.13575	7.3617E-05	0.33972	0.00018423	0.47546	0.00025785	542.3112011966512	40.671	1.1926	40.548	39.893	41.086	-0.12317					113	32	5	0	0	0	0.20166	2	3592	3592;3597		120.87	26.07	1	4441100			86653	7036	60321	60420	96232;96233	96232					0.07040816880339662
VPRRAPRPAS	10	Unmodified	_VPRRAPRPAS_					0	0	0			REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|13|1|sense	REV__SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|13|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.83056640625	2	553.830706	1105.64686	-0.096784	-5.3602E-05	-1.3671	-0.00075713	-1.4639	-0.00081073	553.8298106848152	101.4	0.87207	101.4	101.08	101.95	0					54	19	4	0	0	0	1.089	1	12990	12990		34.173	6.2903	1	880760	+		86654	37637	60322	60421	96234	96234					0.09826167305504896
VPRRFVIWEVI	11	Unmodified	_VPRRFVIWEVI_					0	0	0			REV__nc|ENSG00000144724|P23470-2|PTPRG	REV__nc|ENSG00000144724|P23470-2|PTPRG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.95166015625	3	471.950357	1412.82924	0.59582	0.0002812	1.9714	0.00093038	2.5672	0.0012116	471.9513655918655	104.32	0.63007	104.32	104.07	104.7	-0.0032196					43	15	5	0	0	0	1.0855	1	13305	13305		15.333	1.2471	1	377380	+		86655	24354	60323	60422	96235	96235					0.1393388192761904
VPRRKEASRAR	11	Unmodified	_VPRRKEASRAR_					0	0	0			REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF	REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.6011047363281	3	442.600609	1324.78	-0.23145	-0.00010244	1.2808	0.00056686	1.0493	0.00046442	442.60109763149904	102.37	0.6118	102.37	102.08	102.69	0					24	13	2	0	0	0	1.0674	1	13107	13107		20.315	1.784	1	667140	+		86656	25343	60324	60423	96236	96236					0.13059986691359882
VPRRKLRPR	9	Unmodified	_VPRRKLRPR_					0	0	0			REV__ENSG00000197077|ENST00000358431|KIAA1671	REV__ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3428955078125	2	589.391265	1176.76798	-2.0983	-0.0012367	-0.39171	-0.00023087	-2.4901	-0.0014676	589.3909919719489	92.748	0.21086	92.604	92.528	92.739	-0.14356					5	4	2	0	0	0	0.024541	1	11389	11389		16.473	3.514	1	55129	+		86657	28260	60325	60424	96237	96237					0.18666414738822823
VPRRPEMLRSL	11	Unmodified	_VPRRPEMLRSL_					0	0	0		ENST00000473798.1_1_1:762658-762772:-|nuORF	ENST00000473798.1_1_1:762658-762772:-|nuORF	ENST00000473798.1_1_1:762658-762772:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.93310546875	3	451.930968	1352.77107	0.96808	0.00043751	2.9143	0.0013171	3.8824	0.0017546	451.9321669232396	97.087	2.2013	96.951	95.725	97.926	-0.1367					165	50	4	0	0	0	1.0811	1	12081	12081		16.53	1.8362	1	596220			86658	15018	60326	60425	96238	96238					0.10879877010688688
VPRRVIHFV	9	Unmodified	_VPRRVIHFV_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	561.8451538085938	2	561.848368	1121.68218	-0.3824	-0.00021485	-4.3476	-0.0024427	-4.73	-0.0026576	561.8457535840084	95.407	1.1046	95.407	95.05	96.155	0					83	25	5	0	0	0	0.80658	2	12173	12173;12185		38.806	8.4884	1	1909400			86659	341	60327	60426	96239;96240	96239					0.12620829833326752
VPRRVIHFV	9	Unmodified	_VPRRVIHFV_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;chr14:35045194-35045988|403|23.87|0.93|4.68|+|ENST00000555211|FAM177A1,FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	561.8455200195312	2	561.848368	1121.68218	-0.46919	-0.00026362	-4.2603	-0.0023936	-4.7295	-0.0026573	561.8458359900303	95.569	1.081	95.417	95.055	96.136	-0.15186					84	24	5	0	0	0	0.80658	2	11778	11767;11778		38.806	6.8513	1	1438300			86660	341	60327	60426	96241;96242	96242					0.12620829833326752
VPRSASVLL	9	Unmodified	_VPRSASVLL_					0	0	0		nc|ENSG00000166557|Q9Y3Q3-2|TMED3;ENSG00000166557|ENST00000299705|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2923278808594	2	471.292559	940.570566	0.54867	0.00025858	-0.64577	-0.00030435	-0.097105	-4.5765E-05	471.2922474433009	50.099	1.4463	50.18	49.775	51.221	0.080994					107	41	4	0	0	0	0.26966	1	5153	5153		79.713	11.228	1	26009000			86661	7581	60328	60427	96243	96243					0.09790350685523208
VPRSHSVVT	9	Unmodified	_VPRSHSVVT_					0	0	0			REV__nc|ENSG00000168291|P11177-3|PDHB	REV__nc|ENSG00000168291|P11177-3|PDHB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.33648681640625	2	491.277441	980.540328	-0.12306	-6.0458E-05	-0.096337	-4.7328E-05	-0.2194	-0.00010779	491.277259479712	82.68	0.34357	82.68	82.449	82.793	0					10	7	2	0	0	0	0.024427	1	10323	10323		26.693	10.22	1	163330	+		86662	26245	60329	60428	96244	96244					0.04927992020338934
VPRSHSVVT	9	Unmodified	_VPRSHSVVT_					0	0	0			REV__nc|ENSG00000168291|P11177-3|PDHB	REV__nc|ENSG00000168291|P11177-3|PDHB	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	491.277441	980.540328	0.066046	3.2447E-05	3.6291	0.0017829	3.6952	0.0018154	491.28057055744085	82.774	0.39193	82.553	82.304	82.696	-0.22016	-0.063506	0.0011702	NaN	26.693	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41030	+		86663	26245	60329	60428							0.04927992020338934
VPRSKIVVL	9	Unmodified	_VPRSKIVVL_					0	0	0			REV__ENST00000503993.1_1_4:88604289-88651599:-|nuORF	REV__ENST00000503993.1_1_4:88604289-88651599:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.3236999511719	2	505.839677	1009.6648	-0.41004	-0.00020742	-3.5903	-0.0018161	-4.0003	-0.0020235	505.8382434675064	78.888	0.16847	78.888	78.741	78.91	0					5	3	2	0	0	0	0.024541	1	9765	9765		16.473	0	1	101180	+		86664	33972	60330	60429	96245	96245					0.16035489507669354
VPRSLYIEL	9	Unmodified	_VPRSLYIEL_					0	0	0			REV__ENST00000467658.1_1_22:40696928-40697447:+|nuORF	REV__ENST00000467658.1_1_22:40696928-40697447:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.317138671875	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	0.87448	1	11401	11401		34.173	1.3601	1	12792000	+		86665	33084	60331	60430	96246	96246					0.08222889028456848
VPRSPVLLCKL	11	Unmodified	_VPRSPVLLCKL_					0	0	0		ENSG00000157510|ENST00000296721|AFAP1L1;nc|ENSG00000157510|Q8TED9-3|AFAP1L1;ENST00000455574.6_1_5:148651531-148691878:+|nuORF;nc|ENSG00000157510|Q8TED9-2|AFAP1L1	ENSG00000157510|ENST00000296721|AFAP1L1	ENSG00000157510|ENST00000296721|AFAP1L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	408.9225769042969	3	408.921409	1223.7424	1.2822	0.00052433	2.6545	0.0010855	3.9367	0.0016098	409.25758537787317	103.27	2.0825	103.27	102.86	104.95	-0.0046082					67	52	2	0	0	0	1.0371	1	13183	13183		28.577	6.7963	1	1082800			86666	6604	60332	60431	96247	96247					0.13947759381539981
VPRSSGQTV	9	Unmodified	_VPRSSGQTV_					0	0	0		ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.7535400390625	2	465.753798	929.493044	-0.61613	-0.00028696	0.1548	7.2101E-05	-0.46132	-0.00021486	465.7539162582164	23.501	1.532	23.501	23.165	24.697	0					94	35	4	0	0	0	0.22902	4	919	919;930;941;953		85.161	19.358	1	8324700			86667	9790	60333	60432	96248;96249;96250;96251	96248					0.02547712749344555
VPRSSGQTV	9	Unmodified	_VPRSSGQTV_					0	0	0		ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.75360107421875	2	465.753798	929.493044	-0.5195	-0.00024196	0.02851	1.3279E-05	-0.49099	-0.00022868	465.7538633472265	23.509	1.5928	23.448	23.152	24.744	-0.060862					94	36	4	0	0	0	0.16638	6	913	903;913;925;943;956;971		95.815	27.33	1	8367500			86668	9790	60333	60432	96252;96253;96254;96255;96256;96257	96253					0.02547712749344555
VPRSSGQTV	9	Unmodified	_VPRSSGQTV_					0	0	0		ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	ENSG00000189120|ENST00000536300|SP6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	465.753798	929.493044	0.31764	0.00014794	-0.16838	-7.8422E-05	0.14926	6.9518E-05	465.7538301479711	23.344	0.5388	23.42	23.195	23.734	0.076239	-0.036513	-0.00023901	NaN	95.815	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35899			86669	9790	60333	60432							0.02547712749344555
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(85)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	496.2652282714844	2	496.265684	990.516816	-0.2568	-0.00012744	-0.53128	-0.00026365	-0.78808	-0.0003911	496.26542763132267	37.219	3.0763	37.156	35.942	39.018	-0.063389					158	84	2	0	0	0	0.22902	1	3027	3027		85.161	16.374	1	8069400			86670	5028	60334	60433	96258	96258		205			0.021178101915097614
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(67)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	496.2657775878906	2	496.265684	990.516816	-0.24536	-0.00012176	-0.58759	-0.0002916	-0.83295	-0.00041336	496.26541624758113	37.364	3.0166	37.396	36.127	39.143	0.032269					163	82	2	0	0	0	0.37611	1	3016	3016		67.494	12.717	1	8318800			86671	5028	60334	60433	96259	96259		205			0.021178101915097614
VPRSSSMVL	9	Unmodified	_VPRSSSMVL_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.268310546875	2	488.268227	974.521901	-0.80905	-0.00039503	0.60133	0.00029361	-0.20772	-0.00010142	488.26869525931835	43.619	1.4847	43.474	42.841	44.326	-0.14471					126	41	5	0	0	0	0.32811	1	4075	4075		71.877	14.066	1	12505000			86672	5028	60334	60434	96260	96260					0.03362114054118592
VPRSSSMVL	9	Unmodified	_VPRSSSMVL_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.2684020996094	2	488.268227	974.521901	-0.24673	-0.00012047	-0.063167	-3.0842E-05	-0.30989	-0.00015131	488.26828955129054	43.545	1.3545	43.575	43.116	44.47	0.030823					102	37	5	0	0	0	0.70156	1	4036	4036		45.972	6.9508	1	11714000			86673	5028	60334	60434	96261	96261					0.03362114054118592
VPRTAENFRAL	11	Unmodified	_VPRTAENFRAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.7751770019531	3	425.238566	1272.69387	-0.24676	-0.00010493	0.83289	0.00035418	0.58614	0.00024925	425.23880803468904	43.114	0.54446	42.974	42.702	43.247	-0.13929					47	14	4	0	0	0	0.024751	1	3999	3999		41.08	19.3	1	1356200			86674	6328	60335	60435	96262	96262					0.06842982065995784
VPRTRLAS	8	Unmodified	_VPRTRLAS_					0	0	0		ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.2746887207031	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	1.0009	1	11331	11331		37.159	0	1	55183000			86675	10653	60336	60436	96263	96263					0.08152313228515595
VPRVKLLPMN	10	Unmodified	_VPRVKLLPMN_					0	0	0		ENST00000463769.6_1_22:40948169-40948301:-|nuORF	ENST00000463769.6_1_22:40948169-40948301:-|nuORF	ENST00000463769.6_1_22:40948169-40948301:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	583.859130859375	2	583.857544	1165.70053	1.3634	0.00079603	0.85502	0.00049921	2.2184	0.0012952	583.8578996469528	97.062	1.11	97.062	96.705	97.815	-3.0518E-05					72	24	5	0	0	0	1.1329	1	12344	12344		27.882	0	1	1447700			86676	14742	60337	60437	96264	96264					0.12431203693017778
VPRVLIHGL	9	Unmodified	_VPRVLIHGL_					0	0	0		ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.3253479003906	2	502.324194	1002.63383	-0.014464	-7.2655E-06	4.2571	0.0021385	4.2427	0.0021312	502.32608737352473	106.04	0.54401	106.04	105.75	106.3	-0.0013123					49	18	4	0	0	0	0.99355	1	13584	13584		21.702	7.0382	1	455570			86677	5603	60338	60438	96265	96265					0.13262336193429292
VPRVLIHGL	9	Unmodified	_VPRVLIHGL_					0	0	0		ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.324194	1002.63383	0.65412	0.00032858	3.2796	0.0016474	3.9337	0.001976	502.3258028068187	106.07	0.32194	106.07	105.93	106.25	0	-0.010844	-0.0010569	NaN	21.702	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83011			86678	5603	60338	60438							0.13262336193429292
VPRVLIHGL	9	Unmodified	_VPRVLIHGL_					0	0	0		ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	502.324194	1002.63383	0.13296	6.6791E-05	3.8723	0.0019452	4.0053	0.0020119	502.32602986909205	106.14	0.61324	106.14	105.79	106.4	0.00015259	0.05441	-0.00046138	NaN	21.702	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584480			86679	5603	60338	60438							0.13262336193429292
VPRVLIHGL	9	Unmodified	_VPRVLIHGL_					0	0	0		ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	502.324194	1002.63383	-1.0977	-0.00055138	4.8753	0.002449	3.7776	0.0018976	502.32659642301894	106.21	0.3582	106.08	105.87	106.23	-0.1328	-0.0020725	0.00054623	NaN	21.702	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265610			86680	5603	60338	60438							0.13262336193429292
VPRVSTESF	9	Unmodified	_VPRVSTESF_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant;NCKAP5|p.P826Lfs*6|1|0.18|ENSG00000176771|chr2:132784334-132784334|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.26904296875	2	511.269281	1020.52401	-1.0161	-0.00051949	0.64253	0.00032851	-0.37356	-0.00019099	511.26949379244456	46.511	0.91536	46.358	46.024	46.94	-0.15301					45	24	2	0	0	0	0.062622	1	4589	4589		124.08	30.885	1	3795200			86681	18863	60339	60439	96266	96266					0.0145686606357458
VPRVSTESF	9	Unmodified	_VPRVSTESF_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant;NCKAP5|p.P826Lfs*6|1|0.18|ENSG00000176771|chr2:132784334-132784334|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.268798828125	2	511.269281	1020.52401	-0.34998	-0.00017893	-0.086588	-4.427E-05	-0.43657	-0.0002232	511.26913947264694	46.387	0.85636	46.438	46.131	46.987	0.051395					42	23	2	0	0	0	0.03666	2	4525	4525;4538		136.27	45.898	1	4017400			86682	18863	60339	60439	96267;96268	96267					0.0145686606357458
VPRVSTESF	9	Unmodified	_VPRVSTESF_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant;NCKAP5|p.P826Lfs*6|1|0.18|ENSG00000176771|chr2:132784334-132784334|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.269281	1020.52401	-0.16187	-8.2758E-05	-0.31015	-0.00015857	-0.47202	-0.00024133	511.268991863824	46.395	0.80356	46.395	46.126	46.93	0	-0.029692	-0.00044032	NaN	136.27	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3360900			86683	18863	60339	60439							0.0145686606357458
VPRVSTESF	9	Unmodified	_VPRVSTESF_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant;NCKAP5|p.P826Lfs*6|1|0.18|ENSG00000176771|chr2:132784334-132784334|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.269281	1020.52401	0.040068	2.0485E-05	0.90086	0.00046058	0.94092	0.00048107	511.2694001663692	46.515	0.31828	46.418	46.187	46.506	-0.096649	-0.0069041	0.00079798	NaN	136.27	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233690			86684	18863	60339	60439							0.0145686606357458
VPRVSTESF	9	Unmodified	_VPRVSTESF_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant;NCKAP5|p.P826Lfs*6|1|0.18|ENSG00000176771|chr2:132784334-132784334|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.269281	1020.52401	-0.18228	-9.3196E-05	1.4077	0.00071973	1.2255	0.00062654	511.2690400352395	46.813	0.39085	46.543	46.304	46.695	-0.26939	0.11833	0.0013163	NaN	136.27	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214070			86685	18863	60339	60439							0.0145686606357458
VPRVSTESF	9	Unmodified	_VPRVSTESF_					0	0	0		NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant;NCKAP5|p.P826Lfs*6|1|0.18|ENSG00000176771|chr2:132784334-132784334|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	NCKAP5|p.K772Nfs*29|1|0.24|ENSG00000176771|chr2:132784495-132784495|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.269281	1020.52401	-0.63188	-0.00032306	1.2145	0.00062096	0.58266	0.0002979	511.26926544552543	46.59	0.40659	46.397	46.202	46.609	-0.19387	-0.0284	0.0011187	NaN	136.27	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178480			86686	18863	60339	60439							0.0145686606357458
VPSDRLALL	9	Unmodified	_VPSDRLALL_					0	0	0		ENST00000439220.6_1_15:75074475-75090608:+|nuORF;ENST00000569462.5_1_15:75075012-75090608:+|nuORF	ENST00000439220.6_1_15:75074475-75090608:+|nuORF	ENST00000439220.6_1_15:75074475-75090608:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.2455139160156	2	492.297842	982.581131	0.8822	0.00043431	-0.87221	-0.00042939	0.0099931	4.9196E-06	492.2970866997461	84.984	0.74589	84.825	84.53	85.276	-0.15869					23	17	2	0	0	0	0.024506	1	10264	10264		38.806	8.3025	1	82546			86687	14329	60340	60440	96269	96269					0.08914333339930636
VPSEGKKSL	9	Unmodified	_VPSEGKKSL_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.7738342285156	2	472.7742	943.533846	0.25091	0.00011863	-0.20387	-9.6384E-05	0.047045	2.2242E-05	472.7738043255906	22.826	0.67274	22.826	22.572	23.245	0					22	14	2	0	0	0	0.19099	2	843	831;843		90.37	5.4482	1	800640			86688	343	60341	60441	96270;96271	96271					0.059820540689429436
VPSEGKKSL	9	Unmodified	_VPSEGKKSL_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.77392578125	2	472.7742	943.533846	0.13288	6.282E-05	-0.047543	-2.2477E-05	0.085334	4.0344E-05	472.7740792009592	22.882	0.58352	22.821	22.568	23.152	-0.060862					20	12	2	0	0	0	0.2101	2	838	826;838		87.696	20.203	1	934780			86689	343	60341	60441	96272;96273	96273					0.059820540689429436
VPSEGKKSL	9	Unmodified	_VPSEGKKSL_					0	0	0		chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1;nc|ENSG00000137804|Q9BXS6-7|NUSAP1;ENST00000558123.5_1_15:41625112-41672381:+|nuORF;nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	chr15:41365589-41365816|489|10.25|0.54|4.24|+|ENST00000560898|NUSAP1,NUSAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.77435302734375	2	472.7742	943.533846	-0.40107	-0.00018962	0.68255	0.00032269	0.28148	0.00013308	472.7744891591466	22.694	0.60194	22.768	22.51	23.112	0.073954					25	12	3	0	0	0	0.247	1	770	770		82.75	5.4329	1	832450			86690	343	60341	60441	96274	96274					0.059820540689429436
VPSKKAAV	8	Unmodified	_VPSKKAAV_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.25628662109375	2	400.255446	798.496338	3.0822	0.0012337	-0.26032	-0.00010419	2.8219	0.0011295	400.2553114974012	25.28	0.87429	25.36	25.134	26.008	0.08009					29	20	2	0	0	0	1.0239	1	1139	1139		33.516	0	1	838210	+		86691	21457	60342	60442	96275	96275					0.08903007593994516
VPSKPPMSL	9	Unmodified	_VPSKPPMSL_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.26617431640625	2	478.267696	954.520839	0.047532	2.2733E-05	-0.14693	-7.0272E-05	-0.099399	-4.7539E-05	478.26747095456625	49.293	1.3824	49.141	48.433	49.816	-0.15277					102	37	4	0	0	0	0.22902	2	5057	5057;5069		85.161	19.263	1	2967000			86692	6444	60343	60443	96276;96277	96276					0.041758996852195196
VPSKPPMSL	9	Unmodified	_VPSKPPMSL_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MSMS	OPSCC_39_ClassI_Rep-3	3	478.2650451660156	2	478.267696	954.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.96	1	49.034	48.534	49.534	0.074196								0	0	0	0.13281	1	4964	4964		85.161	8.3142	1				86693	6444	60343	60443	96278	96278					0.041758996852195196
VPSKPPMSL	9	Unmodified	_VPSKPPMSL_					0	0	0		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MSMS	OPSCC_39_ClassI_Rep-3	3	478.26666259765625	2	478.267696	954.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.034	1	49.108	48.608	49.608	0.074196								0	0	0	0.20126	1	4976	4976		75.043	6.2565	1				86694	6444	60343	60443	96279	96279					0.041758996852195196
VPSLPLSHGR	10	Unmodified	_VPSLPLSHGR_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	532.267333984375	2	531.806365	1061.59818	0.98297	0.00052275	-0.90762	-0.00048268	0.075344	4.0068E-05	531.8056993685825	23.014	0.69334	22.823	22.386	23.079	-0.19117					33	14	4	0	0	0	0.03519	1	873	873		14.137	0	1	108730			86695	16656	60344	60444	96280	96280					0.06984253945756791
VPSLPPVF	8	Unmodified	_VPSLPPVF_					0	0	0		ENST00000498259.1_1_22:30735061-30736359:-|nuORF	ENST00000498259.1_1_22:30735061-30736359:-|nuORF	ENST00000498259.1_1_22:30735061-30736359:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2624816894531	2	428.252372	854.49019	0.086818	3.718E-05	0.2811	0.00012038	0.36792	0.00015756	428.25271155952066	90.152	0.2363	90.136	89.999	90.235	-0.016716					7	5	2	0	0	0	0.027866	1	11343	11343		28.254	0	1	687000			86696	15616	60345	60445	96281	96281					0.057124893624859396
VPSNKTTC	8	Unmodified	_VPSNKTTC_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	425.77496337890625	2	425.210378	848.406203	-0.84679	-0.00036007	-2.8977	-0.0012321	-3.7445	-0.0015922	425.20899793732644	43.634	0.50518	43.489	43.205	43.71	-0.14471					21	13	2	0	0	0	0.027866	1	4049	4049		40.573	29.062	1	156210			86697	3190	60346	60446	96282	96282					-0.024064097967539055
VPSNKTTC	8	Unmodified	_VPSNKTTC_					0	0	0		ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	ENSG00000112276|ENST00000314641|BVES	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.210378	848.406203	-1.1905	-0.00050623	-2.4604	-0.0010462	-3.6509	-0.0015524	425.20924568711814	43.475	0.46979	43.475	43.261	43.731	0	-0.037975	0.00064554	NaN	40.573	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188430			86698	3190	60346	60446							-0.024064097967539055
VPSPRATD	8	Unmodified	_VPSPRATD_					0	0	0		nc|ENSG00000104936|Q09013-2|DMPK;ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-5|DMPK;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-11|DMPK;nc|ENSG00000104936|Q09013-15|DMPK;ENSG00000104936|ENST00000291270|DMPK;nc|ENSG00000104936|Q09013-16|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK	nc|ENSG00000104936|Q09013-2|DMPK	nc|ENSG00000104936|Q09013-2|DMPK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	421.7400817871094	2	421.721967	841.429381	-0.41864	-0.00017655	2.0211	0.00085233	1.6024	0.00067578	421.72268248102375	22.955	0.32169	22.955	22.665	22.987	0					9	6	2	0	0	0	0.027866	1	847	847		18.324	0	1	48872			86699	2620	60347	60447	96283	96283					0.0023235231222997754
VPSPSTLVM	9	Unmodified	_VPSPSTLVM_					0	0	0		ENST00000567704.5_1_15:78190746-78191211:+|nuORF	ENST00000567704.5_1_15:78190746-78191211:+|nuORF	ENST00000567704.5_1_15:78190746-78191211:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.76715087890625	2	465.751879	929.489204	0.36016	0.00016775	2.0469	0.00095335	2.4071	0.0011211	465.7528420671993	33.787	0.68156	33.843	33.654	34.336	0.056572					25	16	2	0	0	0	0.024466	1	2420	2420		25.45	0	1	67615			86700	16965	60348	60448	96284	96284					0.021639069312641368
VPSPYPQAVQ	10	Unmodified	_VPSPYPQAVQ_					0	0	0			REV__ENST00000393917.6_1_3:111718145-111718274:+|nuORF	REV__ENST00000393917.6_1_3:111718145-111718274:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.2654418945312	2	543.284931	1084.55531	-1.3927	-0.00075661	-3.4247	-0.0018606	-4.8174	-0.0026172	543.2846160781272	53.462	0.29296	53.557	53.336	53.629	0.095669					10	7	2	0	0	0	0.03519	1	5724	5724		19.104	0	1	95279	+		86701	31657	60349	60449	96285	96285					0.0164143909764789
VPSREKAVLP	10	Unmodified	_VPSREKAVLP_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.7673950195312	2	548.329673	1094.64479	-0.57307	-0.00031423	0.77347	0.00042412	0.20039	0.00010988	548.3300199414739	32.258	0.66646	32.101	31.737	32.403	-0.15772					24	15	2	0	0	0	0.03519	1	2179	2179		18.262	10.027	1	75047	+		86702	24227	60350	60450	96286	96286					0.10125693777035849
VPSRGAVQ	8	Unmodified	_VPSRGAVQ_					0	0	0		ENST00000506042.5_1_5:179239591-179239771:+|nuORF	ENST00000506042.5_1_5:179239591-179239771:+|nuORF	ENST00000506042.5_1_5:179239591-179239771:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	407.26873779296875	2	407.232502	812.450451	0.20138	8.201E-05	0.58002	0.0002362	0.78141	0.00031821	407.23263517363944	28.253	1.689	28.253	27.963	29.652	0					69	41	4	0	0	0	0.027866	1	1693	1693		65.803	10.299	1	1125100			86703	15736	60351	60451	96287	96287					0.036723624117598774
VPSRQNRR	8	Unmodified	_VPSRQNRR_					0	0	0			REV__ENST00000590846.1_1_18:31804054-31804756:-|nuORF	REV__ENST00000590846.1_1_18:31804054-31804756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.82232666015625	2	506.791581	1011.56861	-0.48936	-0.000248	1.4072	0.00071315	0.91782	0.00046514	506.7920694553097	42.984	0.25383	42.984	42.859	43.113	0					9	6	2	0	0	0	0.027866	1	3980	3980		12.207	0	1	106430	+		86704	35712	60352	60452	96288	96288					0.06328734720284501
VPSRSLVAL	9	Unmodified	_VPSRSLVAL_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.29241943359375	2	471.292559	940.570566	0.29171	0.00013748	-0.78695	-0.00037088	-0.49524	-0.0002334	471.2919329673939	52.963	1.0748	52.816	52.021	53.096	-0.14723					59	27	4	0	0	0	0.086035	1	5663	5663		115.49	7.4066	1	2984000	+		86705	20282	60353	60453	96289	96289					0.09790350685523208
VPSRSLVAL	9	Unmodified	_VPSRSLVAL_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.292559	940.570566	0.22116	0.00010423	-0.37379	-0.00017616	-0.15263	-7.1932E-05	471.2922774908996	52.87	0.75141	52.743	52.391	53.143	-0.12705	-0.068594	0.00022522	NaN	115.49	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234970	+		86706	20282	60353	60453							0.09790350685523208
VPSRSLVAL	9	Unmodified	_VPSRSLVAL_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.292559	940.570566	0.6162	0.00029041	-0.73007	-0.00034408	-0.11387	-5.3666E-05	471.29197295780705	53.095	0.85288	52.837	52.482	53.335	-0.25839	0.024775	-0.00011061	NaN	115.49	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226330	+		86707	20282	60353	60453							0.09790350685523208
VPSRSLVAL	9	Unmodified	_VPSRSLVAL_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.292559	940.570566	-0.24166	-0.00011389	-0.023932	-1.1279E-05	-0.26559	-0.00012517	471.2923934207383	53.002	0.66045	52.812	52.51	53.171	-0.18982	0.00035261	0.00055499	NaN	115.49	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398030	+		86708	20282	60353	60453							0.09790350685523208
VPSSKVQLS	9	Unmodified	_VPSSKVQLS_					0	0	0			REV__nc|ENSG00000132463|Q12849-5|GRSF1	REV__nc|ENSG00000132463|Q12849-5|GRSF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7740783691406	2	472.7742	943.533846	-0.40107	-0.00018962	0.68255	0.00032269	0.28148	0.00013308	472.7744891591466	22.694	0.60194	22.768	22.51	23.112	0.073954					25	12	3	0	0	0	0.34489	1	787	787		69.628	3.1983	1	832450	+		86709	23282	60354	60454	96290	96290					0.05982054068965681
VPSSLCLGLL	10	Unmodified	_VPSSLCLGLL_					0	0	0			REV__ENST00000229239.9_1_12:6643106-6643487:+|nuORF	REV__ENST00000229239.9_1_12:6643106-6643487:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.28997802734375	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	1.0004	2	10588	10467;10588		45.952	1.5748	1	10571000	+		86710	29398	60355	60455	96291;96292	96292					0.06244455373735036
VPSTERMVL	9	Unmodified	_VPSTERMVL_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF;ENSG00000108312|ENST00000436088|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MSMS	OPSCC_39_ClassI_Rep-1	1	516.2826538085938	2	516.281334	1030.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.331	1	49.331	48.831	49.831	0								0	0	0	0.24781	1	5092	5092		71.877	0.58177	1				86711	2888	60356	60456	96293	96293					0.03406383225592435
VPSTKPLLV	9	Unmodified	_VPSTKPLLV_					0	0	0			REV__ENST00000312655.8_1_17:57430604-57430868:+|nuORF	REV__ENST00000312655.8_1_17:57430604-57430868:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.8036193847656	2	477.305136	952.595718	-0.27091	-0.00012931	1.0418	0.00049726	0.77088	0.00036795	477.305224658588	91.405	0.81181	91.405	91.133	91.945	0					38	18	3	0	0	0	0.024436	1	11543	11543		38.806	6.8513	1	1405100	+		86712	30223	60357	60457	96294	96294					0.11752405488084605
VPSTPKKKK	9	Unmodified	_VPSTPKKKK_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.26611328125	2	506.829309	1011.64407	-0.60269	-0.00030546	-0.60558	-0.00030693	-1.2083	-0.00061239	506.82910800719395	45.226	0.31483	45.127	44.906	45.221	-0.099449					11	8	2	0	0	0	0.024487	1	4244	4244		17.365	0	1	149610	+		86713	23500	60358	60458	96295	96295					0.1387089912798274
VPSVGSLADP	10	Unmodified	_VPSVGSLADP_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.77154541015625	2	471.250557	940.486562	0.40496	0.00019084	2.0701	0.00097554	2.4751	0.0011664	471.25114868142674	46.616	0.17879	46.667	46.579	46.758	0.051395					5	4	2	0	0	0	0.03519	1	4549	4549		49.442	15.269	1	33852			86714	3953	60359	60459	96296	96296					0.013937747979412052
VPSYLSYK	8	Unmodified	_VPSYLSYK_					0	0	0		ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.75830078125	2	478.758018	955.501483	-0.0057592	-2.7572E-06	1.9755	0.00094579	1.9698	0.00094304	478.7598129096646	33.667	1.8776	33.724	32.647	34.524	0.056572					112	48	5	0	0	0	0.75307	2	2386	2386;2398		62.978	2.6845	1	20332000			86715	8973	60360	60460	96297;96298	96297					0.02195266665944473
VPTASANSL	9	Unmodified	_VPTASANSL_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	430.2299499511719	2	430.229625	858.444697	-0.05644	-2.4282E-05	0.58151	0.00025018	0.52507	0.0002259	430.22983609314764	42.732	1.12	42.732	42.355	43.475	0					87	30	4	0	0	0	0.015901	4	3963	3939;3951;3963;3976		157.33	17.359	1	8777800	+		86716	19148	60361	60461	96299;96300;96301;96302	96301					0.009812191094397349
VPTASANSL	9	Unmodified	_VPTASANSL_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	430.2296447753906	2	430.229625	858.444697	0.062102	2.6718E-05	0.51675	0.00022232	0.57885	0.00024904	430.2297965994174	42.867	1.2963	42.727	42.278	43.575	-0.13929					88	35	4	0	0	0	0.027092	2	3943	3943;3969		143.89	16.425	1	8392300	+		86717	19148	60361	60461	96303;96304	96303					0.009812191094397349
VPTASANSL	9	Unmodified	_VPTASANSL_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	430.2296142578125	2	430.229625	858.444697	0.52456	0.00022568	0.055021	2.3672E-05	0.57958	0.00024935	430.22959922038194	42.758	1.4474	42.784	42.323	43.77	0.026012					92	39	4	0	0	0	0.027092	3	3883	3883;3892;3918		143.89	26.983	1	8824600	+		86718	19148	60361	60461	96305;96306;96307	96305					0.009812191094397349
VPTASANSL	9	Unmodified	_VPTASANSL_					0	0	0			REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	REV__ANLN|p.T899Nfs*34|1|0.28|ENSG00000011426|chr7:36424721-36424722|-/A|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	430.229625	858.444697	-0.05644	-2.4282E-05	0.58151	0.00025018	0.52507	0.0002259	430.22983609314764	42.732	1.12	42.732	42.355	43.475	0	-0.015748	0.00020769	NaN	157.33	87	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8777800	+		86719	19148	60361	60461							0.009812191094397349
VPTERGVTHT	10	Unmodified	_VPTERGVTHT_					0	0	0		ENST00000539309.5_1_12:4677127-4699979:+|nuORF	ENST00000539309.5_1_12:4677127-4699979:+|nuORF	ENST00000539309.5_1_12:4677127-4699979:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2696533203125	2	548.790912	1095.56727	-1.1191	-0.00061412	-3.5098	-0.0019262	-4.6289	-0.0025403	549.2903951812707	55.61	0.11303	55.453	55.386	55.499	-0.15655					4	2	2	0	0	0	0.03519	1	5986	5986		25.574	9.9322	1	50864			86720	16401	60362	60462	96308	96308					0.023310558408411453
VPTGDQSLSY	10	Unmodified	_VPTGDQSLSY_					0	0	0		ENSG00000162598|ENST00000371201|C1orf87	ENSG00000162598|ENST00000371201|C1orf87	ENSG00000162598|ENST00000371201|C1orf87	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.7571411132812	2	533.756204	1065.49785	0.24149	0.0001289	-0.35141	-0.00018757	-0.10992	-5.8669E-05	533.7559492735063	58.997	1.3673	58.756	58.173	59.54	-0.24165					94	33	5	0	0	0	1.0236	1	6519	6519		42.864	0.46813	1	6176100			86721	6958	60363	60463	96309	96309					-0.03227447898552782
VPTGPNLLQP	10	Unmodified	_VPTGPNLLQP_					0	0	0			REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	REV__NOTCH3|p.F2235Pfs*8|1|0.31|ENSG00000074181|chr19:15160925-15160926|-/GCGG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.2617797851562	2	518.295299	1034.57605	-0.63233	-0.00032773	0.28307	0.00014671	-0.34926	-0.00018102	518.2948565781993	56.27	0.61715	56.113	55.678	56.295	-0.15656					20	15	2	0	0	0	0.03519	1	6061	6061		47.657	7.0847	1	197510	+		86722	20519	60364	60464	96310	96310					0.060140294773418645
VPTGPTINT	9	Unmodified	_VPTGPTINT_					0	0	0		nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.2817687988281	2	450.245275	898.475997	0.79655	0.00035864	3.1642	0.0014247	3.9607	0.0017833	450.2467603194994	51.118	0.1138	50.937	50.87	50.984	-0.18071					4	2	2	0	0	0	0.024381	1	5229	5229		37.159	21.517	1	30082			86723	1643	60365	60465	96311	96311					0.022697921435337776
VPTHLRSSV	9	Unmodified	_VPTHLRSSV_					0	0	0			REV__ENSG00000205030|ENST00000378397|OR5L2	REV__ENSG00000205030|ENST00000378397|OR5L2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	498.28515625	2	498.285266	994.555979	-0.77985	-0.00038859	0.32997	0.00016442	-0.44988	-0.00022417	498.28539627479165	34.531	0.86995	34.355	34.089	34.959	-0.17557					64	21	4	0	0	0	0.23085	1	2542	2542		84.916	7.5979	1	4801900	+		86724	28654	60366	60466	96312	96312					0.05848278537382612
VPTKGPTFTV	10	Unmodified	_VPTKGPTFTV_					0	0	0			REV__ENSG00000141385|ENST00000269143|AFG3L2	REV__ENSG00000141385|ENST00000269143|AFG3L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.26953125	2	523.797675	1045.5808	-0.28446	-0.000149	3.7481	0.0019633	3.4637	0.0018143	523.7998092849468	41.721	0.38412	41.494	41.315	41.699	-0.2278					16	9	2	0	0	0	0.03519	1	3721	3721		24.519	4.0374	1	187280	+		86725	24078	60367	60467	96313	96313					0.059829136200733046
VPTPGGGG	8	Unmodified	_VPTPGGGG_					0	0	0			REV__ENST00000408959.2_1_3:48956197-48956359:-|nuORF	REV__ENST00000408959.2_1_3:48956197-48956359:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	641.3839721679688	1	641.325316	640.31804	0.39029	0.0002503	-4.1792	-0.0026802	-3.7889	-0.0024299	641.3226541308644	101.17	0.59692	101.05	100.77	101.37	-0.12576					18	13	2	0	0	0	0.027866	1	12589	12589		14.664	0	1	48601	+		86726	31942	60368	60468	96314	96314					-0.016506623250393204
VPTPGGGG	8	Unmodified	_VPTPGGGG_					0	0	0			REV__ENST00000408959.2_1_3:48956197-48956359:-|nuORF	REV__ENST00000408959.2_1_3:48956197-48956359:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		1	641.325316	640.31804	-0.30148	-0.00019335	-3.0838	-0.0019777	-3.3852	-0.002171	641.3235006926435	101.19	0.36217	101.02	100.88	101.24	-0.17178	-0.015809	-4.9666E-05	NaN	4.3163	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46459	+		86727	31942	60368	60468							-0.016506623250393204
VPTPPPELPT	10	Unmodified	_VPTPPPELPT_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2691040039062	2	524.289682	1046.56481	-1.1255	-0.00059008	-2.977	-0.0015608	-4.1025	-0.0021509	524.2883269407847	35.017	0.36755	34.995	34.866	35.233	-0.021763					23	9	3	0	0	0	0.03519	1	2625	2625		29.15	0	1	810690			86728	6423	60369	60469	96315	96315					0.043392073831682865
VPTPPPELPT	10	Unmodified	_VPTPPPELPT_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3038940429688	2	524.289682	1046.56481	-0.080554	-4.2233E-05	4.2251	0.0022152	4.1446	0.0021729	524.2916726867019	88.977	0.42182	88.846	88.613	89.035	-0.13135					16	9	2	0	0	0	0.03519	1	10872	10872		34.173	5.023	1	120810			86729	6423	60369	60469	96316	96316					0.043392073831682865
VPTRPVGRKKK	11	Unmodified	_VPTRPVGRKKK_					0	0	0			REV__chr15:89594554-89595393|463|10.16|0.5|4.34|+|2|TICRR,TICRR|1	REV__chr15:89594554-89595393|463|10.16|0.5|4.34|+|2|TICRR,TICRR|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.592529296875	3	422.610334	1264.80917	-0.036958	-1.5619E-05	2.9696	0.001255	2.9326	0.0012394	422.61194076935567	50.265	0.19574	50.114	49.996	50.191	-0.1512					9	5	2	0	0	0	0.024834	1	5203	5203		12.957	7.5446	1	82224	+		86730	19379	60370	60470	96317	96317					0.18736130987645083
VPTSEELPT	9	Unmodified	_VPTSEELPT_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2493896484375	2	486.747847	971.481142	0.78937	0.00038422	-2.0293	-0.00098778	-1.24	-0.00060356	486.74701300065806	106.52	0.28253	106.36	106.16	106.44	-0.16132					19	13	2	0	0	0	0.43973	1	13243	13243		63.306	4.5243	1	177420	+		86731	20044	60371	60471	96318	96318					-0.005739487845289659
VPTSEIFFN	9	Unmodified	_VPTSEIFFN_					0	0	0		ENST00000514953.1_1_4:493379-494256:+|nuORF	ENST00000514953.1_1_4:493379-494256:+|nuORF	ENST00000514953.1_1_4:493379-494256:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.74658203125	2	527.266207	1052.51786	-0.54082	-0.00028515	-1.2392	-0.00065338	-1.78	-0.00093853	527.767994185204	31.521	0.60877	31.533	31.214	31.823	0.011799					30	14	3	0	0	0	0.024344	1	2071	2071		45.972	0	1	120100			86732	15889	60372	60472	96319	96319					-0.006296521679587386
VPTSFSSPGSS	11	Unmodified	_VPTSFSSPGSS_					0	0	0		ENSG00000120738|ENST00000239938|EGR1	ENSG00000120738|ENST00000239938|EGR1	ENSG00000120738|ENST00000239938|EGR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.7463989257812	2	526.748379	1051.4822	-1.2931	-0.00068113	-2.41	-0.0012695	-3.7031	-0.0019506	526.7471312288836	31.488	1.2063	31.488	31.173	32.379	0					87	29	5	0	0	0	0.84811	1	2111	2111		54.776	3.4409	1	8613400			86733	3838	60373	60473	96320	96320					-0.0414773441559646
VPTVRRHISL	10	Unmodified	_VPTVRRHISL_					0	0	0			REV__ENST00000354911.8_2_10:28822518-28879725:+|nuORF	REV__ENST00000354911.8_2_10:28822518-28879725:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3424682617188	2	589.361839	1176.70913	-0.52598	-0.00031	3.9436	0.0023242	3.4176	0.0020142	589.3645473279004	92.742	1.3142	92.601	92.171	93.485	-0.14131					36	30	2	0	0	0	0.03519	1	11341	11341		40.778	12.896	1	91114	+		86734	30765	60374	60474	96321	96321					0.12783893653841005
VPTYSNKDE	9	Unmodified	_VPTYSNKDE_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.7465209960938	2	526.748379	1051.4822	-1.2931	-0.00068113	-2.41	-0.0012695	-3.7031	-0.0019506	526.7471312288836	31.488	1.2063	31.488	31.173	32.379	0					87	29	5	0	0	0	0.33245	3	2099	2088;2099;2126		71.296	7.9894	1	8613400	+		86735	28456	60375	60475	96322;96323;96324	96323					-0.041477344156191975
VPTYSNKDE	9	Unmodified	_VPTYSNKDE_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.74658203125	2	526.748379	1051.4822	-0.51999	-0.00027391	-3.4866	-0.0018366	-4.0066	-0.0021105	526.7467088338344	31.429	1.2156	31.44	31.084	32.299	0.011797					94	29	6	0	0	0	0.35646	2	2071	2062;2071		68.787	14.405	1	9216400	+		86736	28456	60375	60475	96325;96326	96326					-0.041477344156191975
VPTYSNKDE	9	Unmodified	_VPTYSNKDE_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.746337890625	2	526.748379	1051.4822	-0.10639	-5.6043E-05	-3.6653	-0.0019307	-3.7717	-0.0019867	526.7464690662675	31.159	1.2612	31.228	30.87	32.131	0.06896					95	30	5	0	0	0	0.39228	4	1988	1988;1996;2008;2035		66.429	13.078	1	8479200	+		86737	28456	60375	60475	96327;96328;96329;96330	96327					-0.041477344156191975
VPVAKTAEL	9	Unmodified	_VPVAKTAEL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	464.2801513671875	2	464.279118	926.543683	0.0053819	2.4987E-06	0.061353	2.8485E-05	0.066734	3.0983E-05	464.2790245830135	40.618	0.90649	40.618	40.247	41.153	0					64	25	4	0	0	0	0.077175	2	3602	3591;3602		118.74	41.969	1	6521300			86738	4079	60376	60476	96331;96332	96332					0.07747242074333371
VPVAKTAEL	9	Unmodified	_VPVAKTAEL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2799987792969	2	464.279118	926.543683	0.84332	0.00039154	-0.85523	-0.00039707	-0.01191	-5.5296E-06	464.27859357659617	40.784	0.81775	40.66	40.371	41.189	-0.12317					58	22	4	0	0	0	0.1158	3	3590	3590;3602;3615		107.01	40.039	1	6384800			86739	4079	60376	60476	96333;96334;96335	96333					0.07747242074333371
VPVAKTAEL	9	Unmodified	_VPVAKTAEL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MSMS	OPSCC_39_ClassI_Rep-3	3	464.2804870605469	2	464.279118	926.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.774	1	40.797	40.297	41.297	0.023006								0	0	0	0.084717	1	3558	3558		95.815	29.386	1				86740	4079	60376	60476	96336	96336					0.07747242074333371
VPVAKTAEL	9	Unmodified	_VPVAKTAEL_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MSMS	OPSCC_39_ClassI_Rep-3	3	464.2805480957031	2	464.279118	926.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.842	1	40.865	40.365	41.365	0.023006								0	0	0	0.047455	1	3570	3570		110.12	33.273	1				86741	4079	60376	60476	96337	96337					0.07747242074333371
VPVALKKV	8	Unmodified	_VPVALKKV_					0	0	0		ENSG00000151414|ENST00000367385|NEK7;nc|ENSG00000151414|Q8TDX7-2|NEK7	ENSG00000151414|ENST00000367385|NEK7	ENSG00000151414|ENST00000367385|NEK7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.713623046875	2	427.297114	852.579674	-0.28058	-0.00011989	0.60372	0.00025797	0.32314	0.00013808	427.29732751426496	31.41	0.40639	31.422	31.257	31.663	0.011797					12	9	2	0	0	0	0.027866	1	2073	2073		19.36	0	1	70947			86742	6199	60377	60477	96338	96338					0.14748744041844475
VPVAPLGAPA	10	Unmodified	_VPVAPLGAPA_					0	0	0			REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF	REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.2584228515625	2	446.268553	890.522553	0.23799	0.00010621	0.58216	0.0002598	0.82015	0.00036601	446.2689080812141	42.576	0.5645	42.576	42.222	42.786	0					30	15	3	0	0	0	0.03519	1	3917	3917		35.201	8.4046	1	311660	+		86743	34745	60378	60478	96339	96339					0.07291276765465682
VPVATVRA	8	Unmodified	_VPVATVRA_					0	0	0			REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.87890625	2	406.75307	811.491587	0.36076	0.00014674	0.34398	0.00013991	0.70474	0.00028665	406.7531991383855	20.159	0.3311	19.991	19.816	20.147	-0.16774					11	6	2	0	0	0	0.027866	1	503	503		18.324	0	1	28838	+		86744	28143	60379	60479	96340	96340					0.07830123451219606
VPVELFSSVL	10	Unmodified	_VPVELFSSVL_					0	0	0			REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3118286132812	2	545.313158	1088.61176	-1.1413	-0.00062234	-1.1465	-0.00062517	-2.2877	-0.0012475	545.3123828997473	44.73	0.54473	44.631	44.244	44.789	-0.099449					25	13	3	0	0	0	0.67706	1	4196	4196		68.787	14.011	1	884580	+		86745	30335	60380	60480	96341	96341					0.07100066934344795
VPVELFSSVL	10	Unmodified	_VPVELFSSVL_					0	0	0			REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	545.313158	1088.61176	-1.1413	-0.00062234	-1.1465	-0.00062517	-2.2877	-0.0012475	545.3123828997473	44.73	0.54473	44.631	44.244	44.789	-0.099449	0.02031	0.00049823	NaN	68.787	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	884580	+		86746	30335	60380	60480							0.07100066934344795
VPVELFSSVL	10	Unmodified	_VPVELFSSVL_					0	0	0			REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	545.313158	1088.61176	-0.83326	-0.00045439	-1.9515	-0.0010642	-2.7848	-0.0015186	545.3119533438215	44.85	0.51144	44.598	44.354	44.865	-0.25252	-0.012344	-0.0003798	NaN	68.787	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1079200	+		86747	30335	60380	60480							0.07100066934344795
VPVELFSSVL	10	Unmodified	_VPVELFSSVL_					0	0	0			REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	REV__ENST00000320583.9_3_7:99162026-99162146:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	545.313158	1088.61176	-1.2756	-0.0006956	-1.7403	-0.00094902	-3.0159	-0.0016446	545.3120963405571	44.813	0.53895	44.602	44.292	44.831	-0.21109	-0.0079657	-0.00014945	NaN	68.787	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1117600	+		86748	30335	60380	60480							0.07100066934344795
VPVEPGPDPE	10	Unmodified	_VPVEPGPDPE_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1;ENST00000486303.1_1_21:46956310-46957840:-|nuORF	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.3168334960938	2	518.253297	1034.49204	0.34074	0.00017659	0.66273	0.00034346	1.0035	0.00052005	518.2547582274876	84.531	1.0219	84.327	83.608	84.63	-0.20329					42	23	3	0	0	0	0.03519	1	10125	10125		20.947	1.587	1	216210			86749	8394	60381	60481	96342	96342					-0.023825464102401384
VPVEPGPDPE	10	Unmodified	_VPVEPGPDPE_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1;ENST00000486303.1_1_21:46956310-46957840:-|nuORF	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.253297	1034.49204	-0.36146	-0.00018733	0.89908	0.00046595	0.53762	0.00027862	518.2535897137002	84.39	0.58122	84.39	84.128	84.709	0	0.088572	0.00016026	NaN	14.865	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214970			86750	8394	60381	60481							-0.023825464102401384
VPVEPGPDPE	10	Unmodified	_VPVEPGPDPE_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1;ENST00000486303.1_1_21:46956310-46957840:-|nuORF	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.253297	1034.49204	-0.86197	-0.00044672	1.2557	0.00065076	0.39371	0.00020404	518.253889777968	84.381	0.49828	84.309	84.091	84.589	-0.072777	0.0068141	0.00052987	NaN	14.865	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202380			86751	8394	60381	60481							-0.023825464102401384
VPVEPGPDPE	10	Unmodified	_VPVEPGPDPE_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1;ENST00000486303.1_1_21:46956310-46957840:-|nuORF	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.253297	1034.49204	-0.88004	-0.00045608	1.1502	0.00059611	0.27018	0.00014002	518.2537362863068	84.308	0.5861	84.334	84.119	84.705	0.026558	0.032551	0.00042057	NaN	14.865	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261110			86752	8394	60381	60481							-0.023825464102401384
VPVEPGPDPE	10	Unmodified	_VPVEPGPDPE_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1;ENST00000486303.1_1_21:46956310-46957840:-|nuORF	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.253297	1034.49204	0.85542	0.00044332	-2.1545	-0.0011166	-1.299	-0.00067323	518.2528996200896	84.349	0.55447	84.191	83.976	84.53	-0.15868	-0.11104	-0.0030048	NaN	14.865	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252090			86753	8394	60381	60481							-0.023825464102401384
VPVEPGPDPE	10	Unmodified	_VPVEPGPDPE_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1;ENST00000486303.1_1_21:46956310-46957840:-|nuORF	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.253297	1034.49204	0.5424	0.0002811	-0.78381	-0.00040621	-0.24141	-0.00012511	518.2529168543181	84.397	0.42783	84.259	84.02	84.448	-0.13789	-0.042497	-0.0015841	NaN	14.865	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281620			86754	8394	60381	60481							-0.023825464102401384
VPVEYRNN	8	Unmodified	_VPVEYRNN_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7230529785156	2	495.753798	989.493044	-0.066172	-3.2805E-05	-1.8089	-0.00089679	-1.8751	-0.00092959	495.75291195939843	47.806	0.3471	47.806	47.591	47.938	0					13	10	2	0	0	0	0.027866	1	4786	4786		47.916	24.873	1	358730	+		86755	29089	60382	60482	96343	96343					-0.0021228725066748666
VPVGKVLK	8	Unmodified	_VPVGKVLK_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2403259277344	2	420.289288	838.564024	0.44838	0.00018845	-3.1405	-0.0013199	-2.6921	-0.0011315	420.28811111510134	37.16	0.29475	37.097	36.904	37.198	-0.063385					10	7	2	0	0	0	0.027866	1	3001	3001		21.702	1.2205	1	58362			86756	2577	60383	60483	96344	96344					0.13828457524789428
VPVGLCYLAW	10	Unmodified	_VPVGLCYLAW_					0	0	0		ENST00000407073.5_2_2:149216331-149221335:+|nuORF	ENST00000407073.5_2_2:149216331-149221335:+|nuORF	ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7997436523438	2	560.79662	1119.57869	-0.1748	-9.8029E-05	1.7602	0.00098713	1.5854	0.0008891	560.7975138554705	55.454	0.76175	55.223	54.891	55.653	-0.23087					75	21	6	0	0	0	1.0111	1	5975	5975		44.531	0.15388	1	13792000			86757	13741	60384	60484	96345	96345					0.02368161610615971
VPVGLNLLPLE	11	Unmodified	_VPVGLNLLPLE_					0	0	0		ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.3536376953125	2	582.355357	1162.69616	-0.21848	-0.00012723	-2.1458	-0.0012496	-2.3643	-0.0013769	582.3541378643334	103.05	0.83205	102.88	102.8	103.63	-0.17034					28	20	2	0	0	0	1.0344	1	12835	12835		29.17	0.020503	1	127320			86758	14496	60385	60485	96346	96346					0.12132017751105195
VPVKKRSPY	9	Unmodified	_VPVKKRSPY_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.252197265625	2	537.326934	1072.63931	-0.20589	-0.00011063	1.4515	0.00077993	1.2456	0.0006693	537.8315821236367	80.74	0.64319	80.503	80.164	80.808	-0.23784					20	15	2	0	0	0	0.024495	1	9683	9683		34.173	0.25091	1	231130	+		86759	21812	60386	60486	96347	96347					0.10590014985245944
VPVKKRSPY	9	Unmodified	_VPVKKRSPY_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.326934	1072.63931	-0.74348	-0.00039949	3.6078	0.0019386	2.8643	0.0015391	537.8316410533265	80.597	0.53316	80.451	80.199	80.733	-0.146	-0.025804	0.0011107	NaN	34.173	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107560	+		86760	21812	60386	60486							0.10590014985245944
VPVKSRKT	8	Unmodified	_VPVKSRKT_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.75152587890625	2	457.792727	913.5709	-0.87849	-0.00040217	0.96933	0.00044375	0.090837	4.1585E-05	457.79294596266624	30.105	0.4483	30.105	29.895	30.343	0					18	10	2	0	0	0	0.027866	1	1879	1879		19.997	4.355	1	100930			86761	4506	60387	60487	96348	96348					0.11065770405377862
VPVLKRWP	8	Unmodified	_VPVLKRWP_					0	0	0			REV__ENST00000550505.5_2_12:117299165-117314498:-|nuORF	REV__ENST00000550505.5_2_12:117299165-117314498:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	497.2622375488281	2	497.813462	993.612371	-0.9925	-0.00049408	-2.1937	-0.0010921	-3.1862	-0.0015861	497.8103832797706	44.502	0.83824	44.397	44.134	44.972	-0.10468					40	21	4	0	0	0	0.027866	1	4127	4127		37.028	12.826	1	156440	+		86762	34906	60388	60488	96349	96349					0.1153095116469558
VPVLLRPE	8	Unmodified	_VPVLLRPE_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.76068115234375	2	461.789653	921.564752	-0.70669	-0.00032634	0.45225	0.00020885	-0.25443	-0.00011749	461.78978924699845	48.394	1.1441	48.297	47.966	49.111	-0.097553					64	30	3	0	0	0	0.027866	1	4848	4848		39.021	13.571	1	4720400	+		86763	24886	60389	60489	96350	96350					0.10083252173853907
VPVLPVAGDP	10	Unmodified	_VPVLPVAGDP_					0	0	0			REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF	REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	481.7681579589844	2	482.279118	962.543683	-0.53947	-0.00026017	-1.1205	-0.0005404	-1.66	-0.00080058	482.2782809483753	44.754	0.54782	44.543	44.362	44.91	-0.21109					19	13	2	0	0	0	0.03519	1	4158	4158		27.882	5.9224	1	468300	+		86764	35012	60390	60490	96351	96351					0.06091242074319325
VPVPLLTHCS	10	Unmodified	_VPVPLLTHCS_					0	0	0		ENST00000489826.1_1_3:49847513-49847846:-|nuORF	ENST00000489826.1_1_3:49847513-49847846:-|nuORF	ENST00000489826.1_1_3:49847513-49847846:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.8212280273438	2	533.291702	1064.56885	-0.66234	-0.00035322	2.0863	0.0011126	1.4239	0.00075937	533.2925994009174	69.905	0.52705	69.917	69.544	70.071	0.012421					28	12	4	0	0	0	0.03519	1	8339	8339		29.15	0	1	877690			86765	15421	60391	60491	96352	96352					0.03914973605242267
VPVRRRALV	9	Unmodified	_VPVRRRALV_					0	0	0		ENST00000564189.1_2_16:31085877-31086042:+|nuORF	ENST00000564189.1_2_16:31085877-31086042:+|nuORF	ENST00000564189.1_2_16:31085877-31086042:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.3004760742188	2	533.353817	1064.69308	-0.50745	-0.00027065	-2.2564	-0.0012035	-2.7639	-0.0014741	533.3531249133905	61.089	0.14753	61.089	61.032	61.18	0					5	3	2	0	0	0	0.024541	1	7063	7063		12.207	0	1	77689			86766	16883	60392	60492	96353	96353					0.1633223220758282
VPVRRRGK	8	Unmodified	_VPVRRRGK_					0	0	0			REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1	REV__nc|ENSG00000187583|Q494U1-3|PLEKHN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.3003845214844	2	484.317235	966.619916	0.33403	0.00016178	-3.0304	-0.0014677	-2.6964	-0.0013059	484.31550788769505	60.239	0.23407	60.042	59.947	60.181	-0.19742					10	5	3	0	0	0	0.027866	1	6690	6690		8.8223	5.138	1	110760	+		86767	27946	60393	60493	96354	96354					0.1352710348498931
VPVSTLPT	8	Unmodified	_VPVSTLPT_					0	0	0			REV__ENSG00000169876|ENST00000306151|MUC17	REV__ENSG00000169876|ENST00000306151|MUC17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	406.87896728515625	2	407.239461	812.46437	0.78725	0.0003206	-3.6746	-0.0014964	-2.8874	-0.0011758	407.23789323516627	20.004	0.44134	20.004	19.735	20.176	0					14	8	2	0	0	0	0.027866	1	457	457		12.207	8.5225	1	131530	+		86768	26408	60394	60494	96355	96355					0.05063595120202535
VPVTGYVLL	9	Unmodified	_VPVTGYVLL_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.2647399902344	2	480.791861	959.569169	-0.87422	-0.00042032	-0.56154	-0.00026998	-1.4358	-0.0006903	480.79142178517117	29.255	1.0634	29.255	29.073	30.137	0					46	26	3	0	0	0	0.024466	1	1770	1770		25.45	0	1	500590	+		86769	28358	60395	60495	96356	96356					0.087767165967648
VPVTSKETVI	10	Unmodified	_VPVTSKETVI_					0	0	0			REV__nc|ENSG00000109814|O60701-3|UGDH	REV__nc|ENSG00000109814|O60701-3|UGDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.294677734375	2	536.816064	1071.61758	0.82856	0.00044479	-1.039	-0.00055778	-0.21049	-0.00011299	536.8152768426862	63.473	0.46479	63.527	63.162	63.627	0.054104					25	12	3	0	0	0	0.03519	1	7304	7304		34.173	0	1	1735400	+		86770	21818	60396	60496	96357	96357					0.08463165446005405
VPVTVLPGCV	10	Unmodified	_VPVTVLPGCV_					0	0	0		ENSG00000151835|ENST00000382292|SACS;SACS|p.N2911*|1|0.28|ENSG00000151835|chr13:23335091-23335145|ACTGTATTAGCAATTCAACATATGCAGGAGCTATTAATGCTGTCATTAAACTGTT/-|frameshift_variant;ENST00000402364.1_1_13:23942575-23949501:-|nuORF	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.28448486328125	2	492.283346	982.552139	0.10478	5.158E-05	3.6664	0.0018049	3.7712	0.0018565	492.2850748911546	93.383	1.9643	93.238	92.208	94.172	-0.1441					100	45	4	0	0	0	1.1259	1	11457	11457		24.203	5.9407	1	3210600			86771	6234	60397	60497	96358	96358					0.06016472719306876
VPWAILVDL	9	Unmodified	_VPWAILVDL_					0	0	0		ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2687377929688	2	513.305136	1024.59572	0.18198	9.3411E-05	-0.31099	-0.00015963	-0.12901	-6.622E-05	513.3048475604418	78.851	1.0975	78.62	78.176	79.273	-0.23141					56	25	4	0	0	0	0.024541	1	9511	9511		12.959	0	1	691560			86772	13701	60398	60498	96359	96359					0.08440405488067881
VPWEEYFRL	9	Unmodified	_VPWEEYFRL_					0	0	0		ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7613525390625	3	413.544996	1237.61316	-0.0039321	-1.6261E-06	-0.35476	-0.00014671	-0.3587	-0.00014834	413.5447503482597	45.467	0.5428	45.51	45.279	45.822	0.043877					23	15	3	0	0	0	0.024447	1	4356	4356		40.778	7.7388	1	183150			86773	9571	60399	60499	96360	96360					0.0038570102308312926
VPWEEYFRL	9	Unmodified	_VPWEEYFRL_					0	0	0		ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	413.544996	1237.61316	-0.52935	-0.00021891	-2.6551	-0.001098	-3.1845	-0.0013169	413.5437104720196	45.3	0.44713	45.2	44.977	45.424	-0.099449	-0.13186	-0.00049217	NaN	40.778	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436190			86774	9571	60399	60499							0.0038570102308312926
VPWEEYFRL	9	Unmodified	_VPWEEYFRL_					0	0	0		ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	413.544996	1237.61316	-0.09683	-4.0044E-05	-2.8997	-0.0011992	-2.9965	-0.0012392	413.54364198090315	45.499	0.47435	45.247	45.055	45.53	-0.25252	-0.08514	-0.00079561	NaN	40.778	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501410			86775	9571	60399	60499							0.0038570102308312926
VPWEEYFRL	9	Unmodified	_VPWEEYFRL_					0	0	0		ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	ENSG00000186710|ENST00000335621|CFAP73	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	413.544996	1237.61316	-0.33323	-0.00013781	-2.7137	-0.0011222	-3.0469	-0.00126	413.54383815493657	45.477	0.42742	45.266	45.056	45.484	-0.21109	-0.065819	-0.00056479	NaN	40.778	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411840			86776	9571	60399	60499							0.0038570102308312926
VPWEVKLFA	9	Unmodified	_VPWEVKLFA_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.294677734375	2	544.810585	1087.60662	-0.59915	-0.00032642	-3.8095	-0.0020755	-4.4087	-0.0024019	544.8079111441097	47.875	0.62197	47.599	47.382	48.004	-0.27598					31	16	2	0	0	0	0.024457	1	4693	4693		37.159	16.212	1	222800	+		86777	23627	60400	60500	96361	96361					0.06631807862368078
VPWEVKLFA	9	Unmodified	_VPWEVKLFA_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	544.810585	1087.60662	-0.52609	-0.00028662	-3.4758	-0.0018936	-4.0018	-0.0021802	544.8079995144583	47.6	0.76698	47.502	47.2	47.966	-0.097553	-0.010949	0.00018954	NaN	29.15	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289240	+		86778	23627	60400	60500							0.06631807862368078
VPWEVKLFA	9	Unmodified	_VPWEVKLFA_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	544.810585	1087.60662	-0.38303	-0.00020868	-3.4815	-0.0018968	-3.8646	-0.0021055	544.8077730679038	47.625	0.70221	47.438	47.199	47.902	-0.18684	-0.075125	0.00018324	NaN	29.15	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213960	+		86779	23627	60400	60500							0.06631807862368078
VPWLLLLL	8	Unmodified	_VPWLLLLL_					0	0	0			REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant	REV__ADAM33|p.Q102Sfs*19|1|0.45|ENSG00000149451|chr20:3675057-3675057|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.79022216796875	2	483.822964	965.631375	-0.040638	-1.9662E-05	0.91994	0.00044509	0.8793	0.00042543	483.8236352634099	45.968	0.27287	45.968	45.748	46.021	0					12	7	2	0	0	0	0.027866	1	4521	4521		10.185	0	1	77313	+		86780	19065	60401	60501	96362	96362					0.14718487735774488
VPWPATFSL	9	Unmodified	_VPWPATFSL_					0	0	0		MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense;MLT1D_dup12653|chr10:46414983-46415321:+|2.2106022030730497|0.1456467840680696|3.92|516.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.782470703125	2	509.273835	1016.53312	-0.14355	-7.3107E-05	-1.3921	-0.00070897	-1.5357	-0.00078208	509.7775173436129	88.642	0.46455	88.51	88.318	88.783	-0.13135					18	10	3	0	0	0	0.024535	1	10854	10854		18.324	0	1	72168			86781	17980	60402	60502	96363	96363					0.025512594198971783
VPWPATFSL	9	Unmodified	_VPWPATFSL_					0	0	0		MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense;MLT1D_dup12653|chr10:46414983-46415321:+|2.2106022030730497|0.1456467840680696|3.92|516.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.273835	1016.53312	0.17748	9.0386E-05	5.9531	0.0030318	6.1306	0.0031221	509.2768749745172	88.818	0.46439	88.818	88.555	89.02	0	0.064501	0.00024673	NaN	18.324	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433490			86782	17980	60402	60502							0.025512594198971783
VPWPATFSL	9	Unmodified	_VPWPATFSL_					0	0	0		MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense;MLT1D_dup12653|chr10:46414983-46415321:+|2.2106022030730497|0.1456467840680696|3.92|516.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MLT1D_dup12665|chr10:47969336-47969674:-|4.618207972055672|0.3099433841415775|3.9|521.0|18|2|anti-sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.273835	1016.53312	0.26588	0.00013541	5.7865	0.0029469	6.0523	0.0030823	509.2767145936876	88.882	0.46822	88.898	88.623	89.092	0.015907	0.14427	7.7001E-05	NaN	18.324	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529290			86783	17980	60402	60502							0.025512594198971783
VPWSQALV	8	Unmodified	_VPWSQALV_					0	0	0			REV__SLC17A9|p.R222W|1|0.29|ENSG00000101194|chr20:62963308-62963308|C/T|missense_variant	REV__SLC17A9|p.R222W|1|0.29|ENSG00000101194|chr20:62963308-62963308|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.2508850097656	2	450.252903	898.491253	-0.48673	-0.00021915	-3.8877	-0.0017505	-4.3745	-0.0019696	450.2510523171095	33.028	1.021	33.035	32.589	33.61	0.0066261					59	27	3	0	0	0	0.46709	1	2319	2319		88.643	3.2834	1	3591800	+		86784	37495	60403	60503	96364	96364					0.037947037313642795
VPWVFHPY	8	Unmodified	_VPWVFHPY_					0	0	0		ENST00000432176.6_1_7:22985115-22985178:-|nuORF	ENST00000432176.6_1_7:22985115-22985178:-|nuORF	ENST00000432176.6_1_7:22985115-22985178:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.2578125	2	522.76872	1043.52289	-1.0064	-0.00052609	1.7734	0.00092708	0.76704	0.00040099	522.769834470881	23.587	0.62979	23.587	23.321	23.951	0					38	14	4	0	0	0	0.027866	1	995	995		54.895	23.365	1	1389700			86785	14197	60404	60504	96365	96365					0.0028669648534105363
VPWVFHPY	8	Unmodified	_VPWVFHPY_					0	0	0		ENST00000432176.6_1_7:22985115-22985178:-|nuORF	ENST00000432176.6_1_7:22985115-22985178:-|nuORF	ENST00000432176.6_1_7:22985115-22985178:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2576293945312	2	522.76872	1043.52289	-0.45341	-0.00023703	1.5625	0.00081682	1.1091	0.0005798	522.7697344685486	23.422	0.67639	23.498	23.234	23.91	0.076241					26	15	3	0	0	0	0.027866	1	882	882		43.626	7.1793	1	1260700			86786	14197	60404	60504	96366	96366					0.0028669648534105363
VPYASTRMGY	10	Unmodified	_VPYASTRMGY_					0	0	0			REV__ENST00000462152.5_1_3:98451353-98503832:+|nuORF	REV__ENST00000462152.5_1_3:98451353-98503832:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2265014648438	2	572.776416	1143.53828	0.27444	0.00015719	2.977	0.0017052	3.2514	0.0018624	572.7782486966795	50.899	0.18561	50.623	50.516	50.702	-0.27643					6	4	2	0	0	0	0.03519	1	5191	5191		56.721	5.3856	1	129940	+		86787	32895	60405	60505	96367	96367					-0.02774804779801343
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2793579101562	2	512.279118	1022.54368	-0.11306	-5.7917E-05	-0.0031697	-1.6238E-06	-0.11623	-5.9541E-05	512.2789642818011	58.225	0.49165	58.048	57.826	58.318	-0.17775					28	11	3	0	0	0	0.26966	2	6390	6390;6402		79.713	21.97	1	2989100			86788	3089;16559	60406	60506	96368;96369	96368					0.03331242074330021
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.279541015625	2	512.279118	1022.54368	-0.16539	-8.4725E-05	0.49995	0.00025611	0.33456	0.00017139	512.2791349627792	58.166	0.54476	57.976	57.674	58.219	-0.19017					27	13	3	0	0	0	0.26966	3	6385	6377;6385;6397		79.713	20.186	1	2409600			86789	3089;16559	60406	60506	96370;96371;96372	96371					0.03331242074330021
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.278076171875	2	512.279118	1022.54368	0.25638	0.00013134	-0.19731	-0.00010108	0.059064	3.0257E-05	512.278891605542	58.249	0.56929	58.015	57.78	58.349	-0.23363					26	13	3	0	0	0	0.19099	2	6391	6378;6391		90.37	33.649	1	3078500			86790	3089;16559	60406	60506	96373;96374	96374					0.03331242074330021
VPYGNVELI	9	Unmodified	_VPYGNVELI_					0	0	0			REV__nc|ENSG00000172367|Q86UT5-3|NHERF4	REV__nc|ENSG00000172367|Q86UT5-3|NHERF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.29052734375	2	502.276575	1002.5386	0.87172	0.00043785	0.094534	4.7482E-05	0.96626	0.00048533	502.27652115386144	85.7	0.75114	85.7	85.247	85.998	0					28	17	2	0	0	0	0.024412	1	10719	10719		17.365	0	1	960310	+		86791	26664	60407	60507	96375	96375					0.03742938211712499
VPYNLNESSS	10	Unmodified	_VPYNLNESSS_					0	0	0			REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENSG00000072858|ENST00000264852|SIDT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	555.2571411132812	2	555.259111	1108.50367	-0.24373	-0.00013533	-0.99267	-0.00055119	-1.2364	-0.00068653	555.2575361270453	29.104	0.62418	29.182	28.942	29.566	0.078344					47	15	4	0	0	0	1.0142	1	1718	1718		44.117	5.3107	1	890490	+		86792	20487	60408	60508	96376	96376					-0.04624349386904214
VPYNLNESSS	10	Unmodified	_VPYNLNESSS_					0	0	0			REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENSG00000072858|ENST00000264852|SIDT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.259111	1108.50367	-1.1691	-0.00064913	0.51787	0.00028755	-0.65118	-0.00036157	555.2581060658897	29.389	0.86558	29.389	29.112	29.977	0	0.081661	0.00079102	NaN	44.117	57	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951040	+		86793	20487	60408	60508							-0.04624349386904214
VPYNLNESSS	10	Unmodified	_VPYNLNESSS_					0	0	0			REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENSG00000072858|ENST00000264852|SIDT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.259111	1108.50367	-0.81725	-0.00045378	0.15152	8.4135E-05	-0.66572	-0.00036965	555.2580306570915	29.349	1.1619	29.352	28.755	29.916	0.0031357	0.044153	0.00038418	NaN	44.117	63	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902880	+		86794	20487	60408	60508							-0.04624349386904214
VPYNLNESSS	10	Unmodified	_VPYNLNESSS_					0	0	0			REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENSG00000072858|ENST00000264852|SIDT1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	555.259111	1108.50367	-0.24373	-0.00013533	-0.99267	-0.00055119	-1.2364	-0.00068653	555.2575361270453	29.104	0.62418	29.182	28.942	29.566	0.078344	-0.12581	-0.00088647	NaN	44.117	47	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890490	+		86795	20487	60408	60508							-0.04624349386904214
VPYVDRNSC	9	Unmodified	_VPYVDRNSC_					0	0	0		ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.7462768554688	2	526.745116	1051.47568	-0.52	-0.00027391	2.7072	0.001426	2.1872	0.0011521	526.7467088338344	31.429	1.2156	31.44	31.084	32.299	0.011797					94	29	6	0	0	0	0.43973	1	2083	2083		63.306	2.3343	1	9216400			86796	4184	60409	60509	96377	96377					-0.04799950847973378
VPYVRHKILN	10	Unmodified	_VPYVRHKILN_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.86962890625	2	619.87204	1237.72953	0.0094928	5.8843E-06	-4.2055	-0.0026069	-4.196	-0.002601	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	1.1056	1	12058	12058		31.955	2.7848	1	4373200			86797	1272	60410	60510	96378	96378					0.12017064313681658
VPYVRHKILN	10	Unmodified	_VPYVRHKILN_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8698120117188	2	619.87204	1237.72953	-1.0156	-0.00062956	-3.2113	-0.0019906	-4.2269	-0.0026202	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.1237	1	12080	12080		23.042	0.46283	1	4459000			86798	1272	60410	60510	96379	96379					0.12017064313681658
VPYVRHKILN	10	Unmodified	_VPYVRHKILN_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8695068359375	2	619.87204	1237.72953	-0.98358	-0.0006097	-3.588	-0.0022241	-4.5716	-0.0028338	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	1.0541	1	11497	11497		38.806	4.8845	1	1625000			86799	1272	60410	60510	96380	96380					0.12017064313681658
VPYVYGAL	8	Unmodified	_VPYVYGAL_					0	0	0		ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	ENSG00000181371|ENST00000327216|OR5M8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	441.7880859375	2	441.242004	880.469455	-0.58521	-0.00025822	-3.1803	-0.0014033	-3.7655	-0.0016615	441.2405385659203	41.145	0.5024	41.01	40.712	41.215	-0.13553					21	12	3	0	0	0	0.027866	1	3605	3605		16.705	0	1	89203			86800	9036	60411	60511	96381	96381					0.02443898982801329
VPYYRGLTID	10	Unmodified	_VPYYRGLTID_					0	0	0		nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;ENSG00000158113|ENST00000339777|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	597.8565063476562	2	598.819138	1195.62372	-0.17532	-0.00010499	4.0097	0.0024011	3.8344	0.0022961	598.8213187140318	93.099	0.25998	92.955	92.785	93.045	-0.1441					10	5	2	0	0	0	0.03519	1	11442	11442		42.396	0	1	38363			86801	6646	60412	60512	96382	96382					0.033736836775233314
VQAAKRASTF	10	Unmodified	_VQAAKRASTF_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	539.7379150390625	2	539.803823	1077.59309	-0.8744	-0.000472	-0.19165	-0.00010345	-1.066	-0.00057545	539.8033033526552	36.995	0.39445	36.775	36.567	36.962	-0.2195					17	9	3	0	0	0	0.03519	1	2932	2932		19.104	1.7386	1	184090	+	+	86802	19526	60413	60513	96383	96383					0.057399500831252226
VQADLNQYKRP	11	Unmodified	_VQADLNQYKRP_					0	0	0			REV__ENST00000366591.4_1_1:236305922-236343463:+|nuORF	REV__ENST00000366591.4_1_1:236305922-236343463:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	443.77166748046875	3	444.573726	1330.69935	-0.017376	-7.7249E-06	-0.032496	-1.4447E-05	-0.049872	-2.2172E-05	444.57347634224226	32.148	0.51917	31.911	31.654	32.173	-0.23667					15	11	2	0	0	0	0.02473	1	2224	2224		21.032	0	1	42177	+		86803	30977	60414	60514	96384	96384					0.04722660857760275
VQAENLVK	8	Unmodified	_VQAENLVK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7843933105469	2	450.761092	899.507631	-0.31753	-0.00014313	3.1131	0.0014033	2.7956	0.0012601	450.76277220026986	28.658	0.63377	28.654	28.286	28.92	-0.0042019					18	14	2	0	0	0	0.027866	1	1675	1675		93.195	36.474	1	81064			86804	4485	60415	60515	96385	96385					0.053857848974644185
VQAFRSLM	8	Oxidation (M)	_VQAFRSLM(Oxidation (M))_		VQAFRSLM(1)		VQAFRSLM(71)	0	0	1			REV__ENSG00000168306|ENST00000302819|ACOX2	REV__ENSG00000168306|ENST00000302819|ACOX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.2534484863281	2	484.25512	966.495686	-0.22628	-0.00010958	-3.3653	-0.0016296	-3.5915	-0.0017392	484.2534186100866	52.372	1.3594	52.372	52.012	53.372	0					101	35	5	0	0	0	0.6536	1	5624	5624		71.296	12.514	1	9564000	+		86805	26247	60416	60516	96386	96386		778			0.011098448826373897
VQAGAVVQGV	10	Unmodified	_VQAGAVVQGV_					0	0	0			REV__ENST00000494399.5_1_1:45478966-45479784:+|nuORF	REV__ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.25689697265625	2	464.266542	926.51853	0.73191	0.0003398	-0.43449	-0.00020172	0.29743	0.00013809	464.26618682019534	54.617	0.62399	54.715	54.426	55.05	0.098015					28	17	2	0	0	0	0.03519	1	5864	5864		34.173	3.6689	1	499370	+		86806	33782	60417	60517	96387	96387					0.05233187271767292
VQAGEARASPG	11	Unmodified	_VQAGEARASPG_					0	0	0		nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;ENST00000381161.5_1_X:2748138-2799251:+|nuORF	nc|ENSG00000056998|O15488-5|GYG2	nc|ENSG00000056998|O15488-5|GYG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	521.7654418945312	2	521.767437	1041.52032	-0.21984	-0.00011471	-3.391	-0.0017693	-3.6108	-0.001884	521.7654960251647	99.293	0.87831	99.293	98.867	99.746	0					55	19	4	0	0	0	0.17798	2	12676	12676;12711		101.46	25.8	1	1217500			86807	1200	60418	60518	96388;96389	96388					0.0012219628970342455
VQAGEARASPG	11	Unmodified	_VQAGEARASPG_					0	0	0		nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;ENST00000381161.5_1_X:2748138-2799251:+|nuORF	nc|ENSG00000056998|O15488-5|GYG2	nc|ENSG00000056998|O15488-5|GYG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7654418945312	2	521.767437	1041.52032	-0.057884	-3.0202E-05	-3.4738	-0.0018125	-3.5317	-0.0018427	521.765449559493	99.249	0.96301	99.259	98.78	99.743	0.010231					57	21	4	0	0	0	0.073523	4	12664	12642;12653;12664;12676		114.89	39.851	1	1230600			86808	1200	60418	60518	96390;96391;96392;96393	96392					0.0012219628970342455
VQAGEARASPG	11	Unmodified	_VQAGEARASPG_					0	0	0		nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;ENST00000381161.5_1_X:2748138-2799251:+|nuORF	nc|ENSG00000056998|O15488-5|GYG2	nc|ENSG00000056998|O15488-5|GYG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.765380859375	2	521.767437	1041.52032	0.23433	0.00012227	-3.9165	-0.0020435	-3.6821	-0.0019212	521.7652327012703	99.358	0.91754	99.354	98.9	99.817	-0.0038834					47	20	3	0	0	0	0.073523	3	12633	12611;12622;12633		114.89	15.483	1	1160900			86809	1200	60418	60518	96394;96395;96396	96396					0.0012219628970342455
VQAGEARASPG	11	Unmodified	_VQAGEARASPG_					0	0	0		nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;ENST00000381161.5_1_X:2748138-2799251:+|nuORF	nc|ENSG00000056998|O15488-5|GYG2	nc|ENSG00000056998|O15488-5|GYG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.767437	1041.52032	0.40148	0.00020948	-3.6065	-0.0018817	-3.205	-0.0016723	521.7652396121522	99.483	0.54189	99.348	98.973	99.514	-0.13526	0.021814	-1.5721E-05	NaN	114.89	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120760			86810	1200	60418	60518							0.0012219628970342455
VQAGEARASPG	11	Unmodified	_VQAGEARASPG_					0	0	0		nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2;ENST00000381161.5_1_X:2748138-2799251:+|nuORF	nc|ENSG00000056998|O15488-5|GYG2	nc|ENSG00000056998|O15488-5|GYG2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.767437	1041.52032	0.10868	5.6704E-05	-3.4171	-0.0017829	-3.3084	-0.0017262	521.7654891830299	99.544	0.65182	99.375	98.985	99.637	-0.16862	0.049228	0.00018194	NaN	114.89	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101890			86811	1200	60418	60518							0.0012219628970342455
VQAGTVSPNP	10	Unmodified	_VQAGTVSPNP_					0	0	0			REV__ENSG00000169856|ENST00000305901|ONECUT1	REV__ENSG00000169856|ENST00000305901|ONECUT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.31292724609375	2	485.253631	968.49271	0.13998	6.7927E-05	0.26948	0.00013077	0.40947	0.00019869	485.2536562802763	39.8	0.68432	39.8	39.562	40.247	0					27	18	2	0	0	0	0.03519	1	3477	3477		60.118	3.3972	1	434070	+		86812	26404	60419	60519	96397	96397					0.007202930294738508
VQAIKEAEI	9	Unmodified	_VQAIKEAEI_					0	0	0			REV__ENSG00000107566|ENST00000421367|ERLIN1	REV__ENSG00000107566|ENST00000421367|ERLIN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7870178222656	2	500.787307	999.560061	0.35902	0.00017979	-1.2574	-0.0006297	-0.8984	-0.00044991	500.7855799705616	54.595	1.1426	54.693	54.077	55.22	0.098015					94	32	4	0	0	0	0.12914	1	5928	5928		104.06	7.8664	1	5169800	+		86813	21673	60420	60520	96398	96398					0.060263232404167866
VQAKKLLDSIP	11	Unmodified	_VQAKKLLDSIP_					0	0	0			REV__ENSG00000205089|ENST00000378731|CCNI2	REV__ENSG00000205089|ENST00000378731|CCNI2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	606.3699951171875	2	606.371538	1210.72852	-0.71977	-0.00043645	-2.5924	-0.001572	-3.3122	-0.0020084	606.3698624712221	92.607	2.6722	92.599	91.708	94.381	-0.0082855					144	64	4	0	0	0	1.0718	1	11743	11743		19.104	1.6355	1	575490	+		86814	28658	60421	60521	96399	96399					0.13158805154080255
VQAKRPECYKM	11	Unmodified	_VQAKRPECYKM_					0	0	0		ENST00000335661.6_1_15:80263304-80263385:-|nuORF	ENST00000335661.6_1_15:80263304-80263385:-|nuORF	ENST00000335661.6_1_15:80263304-80263385:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7791442871094	3	451.565297	1351.67406	-0.57395	-0.00025917	2.9609	0.0013371	2.387	0.0010779	451.56648292813986	30.723	0.42409	30.545	30.366	30.791	-0.17817					15	9	2	0	0	0	0.024747	1	1972	1972		47.228	13.306	1	86048			86815	12394	60422	60522	96400	96400					0.012291467393424682
VQAKVFSRKNH	11	Unmodified	_VQAKVFSRKNH_					0	0	0		nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;ENST00000522777.1_1_8:17838062-17840131:+|nuORF	nc|ENSG00000078674|Q15154-5|PCM1	nc|ENSG00000078674|Q15154-5|PCM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.58544921875	3	438.586077	1312.7364	-0.066176	-2.9024E-05	-0.93697	-0.00041094	-1.0032	-0.00043997	438.58561979454004	33.116	0.67712	32.916	32.609	33.286	-0.20019					28	16	2	0	0	0	1.0123	1	2334	2334		34.087	3.5176	1	1134400			86816	1642	60423	60523	96401	96401					0.09254377194247354
VQALVHLAL	9	Unmodified	_VQALVHLAL_					0	0	0			REV__ENSG00000103932|ENST00000304330|RPAP1	REV__ENSG00000103932|ENST00000304330|RPAP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.27783203125	2	482.302927	962.591301	0.0062701	3.0241E-06	-3.2903	-0.0015869	-3.284	-0.0015839	482.30129386589135	19.94	0.44134	19.94	19.735	20.176	0					12	8	2	0	0	0	0.024517	1	474	474		19.36	0	1	14085	+		86817	21407	60424	60524	96402	96402					0.10850941065154984
VQAMILLPQ	9	Unmodified	_VQAMILLPQ_					0	0	0		ENST00000490775.5_1_X:148580774-148584869:-|nuORF	ENST00000490775.5_1_X:148580774-148584869:-|nuORF	ENST00000490775.5_1_X:148580774-148584869:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.8422546386719	2	506.79662	1011.57869	-0.015423	-7.8161E-06	-2.7281	-0.0013826	-2.7436	-0.0013904	506.7947840925842	65.646	0.55806	65.683	65.455	66.013	0.037384					19	14	2	0	0	0	0.024294	1	7705	7705		29.15	0	1	153050			86818	15439	60425	60525	96403	96403					0.07336161610646741
VQANLEELY	9	Unmodified	_VQANLEELY_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.7750244140625	2	539.774396	1077.53424	0.4151	0.00022406	-0.046342	-2.5014E-05	0.36876	0.00019905	539.7742232686568	77.252	0.86641	77.01	76.666	77.532	-0.24232					37	21	2	0	0	0	0.35646	1	9180	9180		68.787	0.30212	1	1835000	+		86819	26525	60426	60526	96404	96404					-0.0014257100183385774
VQAQYGEL	8	Unmodified	_VQAQYGEL_					0	0	0			REV__ENST00000338302.7_1_1:156884783-156884978:+|nuORF	REV__ENST00000338302.7_1_1:156884783-156884978:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	454.3023986816406	2	454.229625	906.444697	-0.44726	-0.00020316	4.3972	0.0019973	3.9499	0.0017942	454.23156919959735	60.852	0.56313	60.638	60.31	60.873	-0.21339					23	14	2	0	0	0	0.027866	1	6965	6965		68.787	0	1	127470	+		86820	30581	60427	60527	96405	96405					-0.012267808905676247
VQAREQNL	8	Unmodified	_VQAREQNL_					0	0	0		BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant;nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	BCAR3|p.H692Cfs*20|1|0.26|ENSG00000137936|chr1:93567752-93567753|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.8001403808594	2	479.259248	956.503943	-0.41896	-0.00020079	0.95962	0.00045991	0.54066	0.00025912	479.25940868046104	26.956	0.72277	26.788	26.42	27.142	-0.16816					27	16	2	0	0	0	0.027866	1	1456	1456		90.777	0	1	272680			86821	181	60428	60528	96406	96406					0.023951151236246915
VQARLVKS	8	Unmodified	_VQARLVKS_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.7847595214844	2	450.784902	899.55525	-0.71854	-0.00032391	-0.50162	-0.00022612	-1.2202	-0.00055003	450.78482508917403	28.68	2.232	28.68	28.318	30.55	0					135	54	5	0	0	0	0.38451	2	1728	1691;1728		99.375	17.07	1	30076000			86822	9431	60429	60529	96407;96408	96408					0.10145483888334184
VQARWTRF	8	Unmodified	_VQARWTRF_					0	0	0			REV__ENST00000550735.6_1_12:112280040-112280175:+|nuORF	REV__ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2941284179688	2	532.293425	1062.5723	-0.53236	-0.00028337	-0.82119	-0.00043711	-1.3536	-0.00072049	532.2929520611472	77.717	0.98764	77.717	77.295	78.282	0					35	23	2	0	0	0	0.81662	1	9610	9610		57.811	4.8746	1	2574200	+		86823	34915	60430	60530	96409	96409					0.04351404494127564
VQATDREEN	9	Unmodified	_VQATDREEN_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.3023071289062	2	531.246535	1060.47852	-0.73975	-0.00039299	4.3097	0.0022895	3.57	0.0018965	531.2486221518758	34.02	0.65537	33.813	33.587	34.242	-0.20696					39	16	4	0	0	0	0.024447	1	2532	2532		32.812	9.7699	1	1223600			86824	10241	60431	60531	96410	96410					-0.049304041894629336
VQATDREEN	9	Unmodified	_VQATDREEN_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.246535	1060.47852	-0.39088	-0.00020765	10.008	0.0053166	9.6169	0.0051089	531.2508490098268	34.085	0.20387	34.08	33.948	34.152	-0.0045624	0.14547	0.0058693	NaN	19.104	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78838			86825	10241	60431	60531							-0.049304041894629336
VQAVKRDI	8	Unmodified	_VQAVKRDI_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2568054199219	2	464.782359	927.550165	0.016496	7.667E-06	-1.3541	-0.00062936	-1.3376	-0.00062169	464.78171548187726	54.693	0.66086	54.543	54.084	54.745	-0.15036					23	18	2	0	0	0	0.027866	1	5962	5962		12.207	0.69583	1	210330			86826	6581	60432	60532	96411	96411					0.08349180025709302
VQAVVAVAR	9	Unmodified	_VQAVVAVAR_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	456.76776123046875	2	456.784902	911.55525	-0.2819	-0.00012877	-0.57135	-0.00026098	-0.85324	-0.00038975	456.7847452800746	32.722	0.2839	32.56	32.48	32.764	-0.16165					9	6	2	0	0	0	0.024294	1	2274	2274		45.952	0	1	60624			86827	3431	60433	60533	96412	96412					0.09593483888318133
VQCLVTVPV	9	Unmodified	_VQCLVTVPV_					0	0	0		ENST00000243077.7_1_12:57589876-57589927:+|nuORF	ENST00000243077.7_1_12:57589876-57589927:+|nuORF	ENST00000243077.7_1_12:57589876-57589927:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2772521972656	2	479.275521	956.536489	0.41467	0.00019874	2.5663	0.00123	2.981	0.0014287	479.27719712894776	86.114	2.6991	85.977	85.241	87.94	-0.13734					148	63	4	0	0	0	0.75397	1	10485	10485		42.396	5.3677	1	1015600			86828	11290	60434	60534	96413	96413					0.05648186202256511
VQCNVIALN	9	Unmodified	_VQCNVIALN_					0	0	0			REV__ENSG00000173988|ENST00000595396|LRRC63	REV__ENSG00000173988|ENST00000595396|LRRC63	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.77386474609375	2	487.260402	972.506251	-0.60485	-0.00029472	0.14716	7.1703E-05	-0.4577	-0.00022302	487.25886945174364	27.111	1.6067	26.869	26.156	27.763	-0.24217					61	38	3	0	0	0	0.023596	1	1525	1525		63.306	0	1	542120	+		86829	26825	60435	60535	96414	96414					0.01889827537047495
VQCQCPRTV	9	Unmodified	_VQCQCPRTV_					0	0	0			REV__ENSG00000143816|ENST00000272164|WNT9A	REV__ENSG00000143816|ENST00000272164|WNT9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.299072265625	2	517.249511	1032.48447	0.29816	0.00015422	0.9907	0.00051244	1.2889	0.00066666	517.2497038784311	58.697	0.26156	58.51	58.386	58.648	-0.18705					9	6	2	0	0	0	0.024477	1	6644	6644		27.882	0	1	125380	+		86830	24287	60436	60536	96415	96415					-0.03047300483149229
VQCTYTRDS	9	Unmodified	_VQCTYTRDS_					0	0	0			REV__nc|ENSG00000211891|P01854|IGHE	REV__nc|ENSG00000211891|P01854|IGHE	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2973022460938	2	536.740031	1071.46551	-0.69615	-0.00037365	-3.9921	-0.0021427	-4.6882	-0.0025164	536.738203550255	28.487	0.45603	28.568	28.37	28.826	0.080812					21	10	4	0	0	0	0.024541	1	1646	1646		24.203	0	1	79590	+		86831	37118	60437	60537	96416	96416					-0.06736558573220464
VQCVTHNLTI	10	Unmodified	_VQCVTHNLTI_					0	0	0			REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF	REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.3212890625	2	564.297516	1126.58048	-0.29579	-0.00016692	-3.3246	-0.0018761	-3.6204	-0.002043	564.294737355921	103.84	0.4949	103.71	103.38	103.87	-0.12928					22	11	3	0	0	0	0.03519	1	12895	12895		14.865	0	1	148640	+		86832	34541	60438	60538	96417	96417					0.022251706285715045
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.76318359375	2	516.764029	1031.5135	-1.4963	-0.00077326	0.69068	0.00035692	-0.80567	-0.00041634	516.7642373297106	37.787	0.61594	37.787	37.486	38.102	0					46	17	4	0	0	0	0.015203	1	3111	3111		160.82	45.927	1	2689200			86833	5048	60439	60539	96418	96418					-0.0009916138151311316
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	516.764029	1031.5135	-1.1138	-0.00057559	0.28477	0.00014716	-0.82905	-0.00042843	516.7640594387035	37.692	0.62352	37.61	37.36	37.984	-0.082516	-0.13878	-0.0002707	NaN	160.82	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2474000			86834	5048	60439	60539							-0.0009916138151311316
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	516.764029	1031.5135	-1.3817	-0.00071403	0.90685	0.00046863	-0.47489	-0.0002454	516.7641312643759	37.843	0.63452	37.875	37.6	38.235	0.032269	0.12657	0.00037224	NaN	160.82	47	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2401600			86835	5048	60439	60539							-0.0009916138151311316
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.764029	1031.5135	-0.43598	-0.0002253	0.14493	7.4897E-05	-0.29105	-0.0001504	516.76384630252	37.895	0.46429	37.716	37.443	37.908	-0.17929	-0.032356	-0.00041522	NaN	160.82	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540610			86836	5048	60439	60539							-0.0009916138151311316
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	516.764029	1031.5135	-0.79578	-0.00041123	0.7395	0.00038215	-0.056279	-2.9083E-05	516.7641808171264	37.977	0.39359	37.755	37.504	37.898	-0.22148	0.0066443	0.00019928	NaN	160.82	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608730			86837	5048	60439	60539							-0.0009916138151311316
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	516.764029	1031.5135	-0.86787	-0.00044848	0.90569	0.00046803	0.037816	1.9542E-05	516.7644168928437	37.966	0.3907	37.748	37.535	37.926	-0.21848	-0.00089763	0.00037103	NaN	160.82	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472410			86838	5048	60439	60539							-0.0009916138151311316
VQDFCCNLL	9	Unmodified	_VQDFCCNLL_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	527.7694091796875	2	527.738445	1053.46234	-0.48884	-0.00025798	2.7527	0.0014527	2.2638	0.0011947	527.7403461610882	53.343	0.18076	53.439	53.3	53.481	0.095669					6	4	2	0	0	0	0.023454	1	5681	5681		93.195	19.221	1	56898	+		86839	27373	60440	60540	96419	96419					-0.06225524951582884
VQDFKVTD	8	Unmodified	_VQDFKVTD_					0	0	0		chr22:36386560-36387807|110|11.28|0.36|4.96|-|0|None,MYH9|1	chr22:36386560-36387807|110|11.28|0.36|4.96|-|0|None,MYH9|1	chr22:36386560-36387807|110|11.28|0.36|4.96|-|0|None,MYH9|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	475.289794921875	2	476.242732	950.470912	1.3762	0.00065541	-0.38248	-0.00018215	0.99373	0.00047326	476.2425957298691	58.89	0.25566	58.703	58.538	58.793	-0.18705					9	6	2	0	0	0	0.027866	1	6678	6678		29.15	3.6994	1	87660			86840	385	60441	60541	96420	96420					-0.006305117190890996
VQDFVESAR	9	Unmodified	_VQDFVESAR_					0	0	0		ENST00000264709.7_2_2:25454722-25454848:-|nuORF	ENST00000264709.7_2_2:25454722-25454848:-|nuORF	ENST00000264709.7_2_2:25454722-25454848:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2722778320312	2	525.764363	1049.51417	-1.1747	-0.00061759	0.96387	0.00050677	-0.21078	-0.00011082	525.7645986823095	39.459	0.82572	39.36	39.018	39.844	-0.098751					52	22	4	0	0	0	0.022832	1	3363	3363		71.877	0	1	1875400			86841	11569	60442	60542	96421	96421					-0.008603219418091612
VQDGATHSL	9	Unmodified	_VQDGATHSL_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2790832519531	2	464.230156	926.445759	-0.33576	-0.00015587	-2.3134	-0.0010739	-2.6491	-0.0012298	464.2287925830866	51.402	0.37516	51.489	51.339	51.715	0.087006					20	10	3	0	0	0	0.024447	1	5362	5362		25.574	8.2091	1	181120			86842	9567	60443	60543	96422	96422					-0.02040566521668552
VQDIVYRT	8	Unmodified	_VQDIVYRT_					0	0	0		ENST00000519879.1_1_8:118533115-118541135:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30	ENST00000519879.1_1_8:118533115-118541135:+|nuORF	ENST00000519879.1_1_8:118533115-118541135:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2720947265625	2	497.271824	992.529095	0.051009	2.5365E-05	0.66652	0.00033144	0.71753	0.00035681	497.27223352743744	89.513	2.0339	89.513	88.936	90.97	0					105	48	5	0	0	0	0.81662	1	11296	11296		57.811	2.3071	1	1314200			86843	7320	60444	60544	96423	96423					0.032531699261767244
VQDKASEKVS	10	Unmodified	_VQDKASEKVS_					0	0	0		nc|ENSG00000106078|O75128-5|COBL;nc|ENSG00000106078|O75128-4|COBL;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-5|COBL	nc|ENSG00000106078|O75128-5|COBL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	545.8341674804688	2	545.790578	1089.5666	-1.0817	-0.00059037	-4.3401	-0.0023688	-5.4217	-0.0029591	545.7880361461575	48.92	0.52633	48.82	48.581	49.107	-0.1008					37	13	4	0	0	0	0.03519	1	4886	4886		31.53	3.6476	1	447720			86844	2758	60445	60545	96424	96424					0.0254021640114388
VQDLQTTIK	9	Unmodified	_VQDLQTTIK_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.2977905273438	2	523.298039	1044.58152	-0.98948	-0.00051779	-1.0491	-0.00054898	-2.0386	-0.0010668	523.29775160659	51.773	1.8883	51.86	51.264	53.152	0.087006					123	50	4	0	0	0	0.16638	1	5423	5423		95.815	0	1	22616000	+		86845	21295	60446	60546	96425	96425					0.061017082691250835
VQDQHDFFT	9	Unmodified	_VQDQHDFFT_					0	0	0			REV__ENSG00000140395|ENST00000267973|SKIC8	REV__ENSG00000140395|ENST00000267973|SKIC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2941284179688	2	568.753995	1135.49344	-0.50143	-0.00028519	0.30071	0.00017103	-0.20072	-0.00011416	568.7540307528461	45.04	0.79465	44.829	44.554	45.349	-0.21109					52	21	4	0	0	0	0.024427	1	4265	4265		34.173	7.4796	1	3136800	+		86846	24012	60447	60547	96426	96426					-0.06888912321483076
VQDVARHQN	9	Unmodified	_VQDVARHQN_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8037109375	2	533.773054	1065.53155	-0.39187	-0.00020917	-2.9464	-0.0015727	-3.3382	-0.0017819	533.7701720004575	34.101	0.20159	34.097	33.988	34.19	-0.0045624					6	4	2	0	0	0	0.024477	1	2515	2515		44.117	12.162	1	41692	+		86847	19928	60448	60548	96427	96427					0.0014101838385158771
VQEARALLR	9	Unmodified	_VQEARALLR_					0	0	0		ENSG00000172315|ENST00000372114|TP53RK	ENSG00000172315|ENST00000372114|TP53RK	ENSG00000172315|ENST00000372114|TP53RK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2728881835938	2	528.31964	1054.62473	-0.13771	-7.2756E-05	0.82667	0.00043675	0.68896	0.00036399	528.3201114394285	45.889	0.58554	45.939	45.687	46.272	0.049438					38	16	3	0	0	0	0.024405	1	4448	4448		35.618	0	1	1644200			86848	8261	60449	60549	96428	96428					0.09959942837076596
VQEEDATEPP	10	Unmodified	_VQEEDATEPP_					0	0	0			REV__ENSG00000159658|ENST00000371933|EFCAB14	REV__ENSG00000159658|ENST00000371933|EFCAB14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.3499145507812	2	557.748576	1113.4826	-0.21055	-0.00011744	0.27619	0.00015404	0.065638	3.6609E-05	557.7487590594419	49.914	0.32831	49.763	49.596	49.924	-0.1512					13	8	2	0	0	0	0.03519	1	5183	5183		47.657	8.8512	1	183180	+		86849	25268	60450	60550	96429	96429					-0.06960359486402012
VQEEDATEPP	10	Unmodified	_VQEEDATEPP_					0	0	0			REV__ENSG00000159658|ENST00000371933|EFCAB14	REV__ENSG00000159658|ENST00000371933|EFCAB14	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.748576	1113.4826	0.1484	8.2771E-05	0.4218	0.00023526	0.5702	0.00031803	557.7485740744803	49.674	0.36882	49.674	49.473	49.842	0	-0.021191	-6.4948E-05	NaN	47.657	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189730	+		86850	25268	60450	60550							-0.06960359486402012
VQEEDATEPP	10	Unmodified	_VQEEDATEPP_					0	0	0			REV__ENSG00000159658|ENST00000371933|EFCAB14	REV__ENSG00000159658|ENST00000371933|EFCAB14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.748576	1113.4826	-0.79811	-0.00044514	1.0084	0.00056245	0.21031	0.0001173	557.7491013249862	49.575	0.3375	49.649	49.503	49.84	0.074192	-0.04639	0.00058943	NaN	47.657	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172880	+		86851	25268	60450	60550							-0.06960359486402012
VQEFALFLI	9	Unmodified	_VQEFALFLI_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.3101806640625	2	540.310418	1078.60628	-0.11131	-6.0142E-05	0.1045	5.6462E-05	-0.006811	-3.6801E-06	540.3102901938151	105.34	0.82503	105.34	105.06	105.89	0					35	22	2	0	0	0	0.62163	1	13555	13555		51.335	3.6781	1	1127800			86852	10978	60451	60551	96430	96430					0.07012388142516102
VQEKLHQL	8	Unmodified	_VQEKLHQL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.75830078125	2	497.787641	993.56073	0.42103	0.00020959	3.9537	0.0019681	4.3747	0.0021777	497.7892624695689	67.939	0.45486	67.958	67.743	68.198	0.018913					20	11	2	0	0	0	0.027866	1	8078	8078		51.335	1.8939	1	231520			86853	4485	60452	60552	96431	96431					0.0636916268015284
VQEKSCVI	8	Unmodified	_VQEKSCVI_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	452.7534484863281	2	453.241678	904.468803	0.4784	0.00021683	-0.19762	-8.9569E-05	0.28078	0.00012726	453.24142629041734	74.351	0.54924	74.092	73.86	74.409	-0.25887					22	12	2	0	0	0	0.027866	1	9102	9102		10.866	0	1	367660			86854	9666	60453	60553	96432	96432					0.012747362714549126
VQEKSCVI	8	Unmodified	_VQEKSCVI_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	453.241678	904.468803	-0.3496	-0.00015845	0.52389	0.00023745	0.17429	7.8997E-05	453.24173429036887	74.124	0.4304	74.133	73.924	74.355	0.0096512	0.041704	0.00083224	NaN	16.473	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355970			86855	9666	60453	60553							0.012747362714549126
VQELRKYKEN	10	Unmodified	_VQELRKYKEN_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-2|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.7928466796875	3	436.241976	1305.7041	-0.23094	-0.00010074	2.7888	0.0012166	2.5578	0.0011158	436.5773319138095	33.255	0.48027	33.024	32.752	33.232	-0.23107					15	11	2	0	0	0	0.03519	1	2360	2360		40.058	13.011	1	60415			86856	10310	60454	60554	96433	96433					0.06347545000585342
VQEPGEKVAL	10	Unmodified	_VQEPGEKVAL_					0	0	0			REV__ENSG00000142789|ENST00000290122|CELA3A	REV__ENSG00000142789|ENST00000290122|CELA3A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.296875	2	535.298039	1068.58152	-0.15991	-8.5602E-05	-2.1874	-0.0011709	-2.3473	-0.0012565	535.2967314099936	79.737	1.2944	79.518	79.16	80.454	-0.21923					82	30	4	0	0	0	0.82838	1	9535	9535		58.782	0.97068	1	4882300	+		86857	24184	60455	60555	96434	96434					0.04997708269161194
VQEQLLAIL	9	Unmodified	_VQEQLLAIL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.8027954101562	2	513.813325	1025.6121	0.24398	0.00012536	-0.25515	-0.0001311	-0.011174	-5.7414E-06	513.81312445057	60.235	0.97483	60.038	59.537	60.512	-0.19742					39	24	2	0	0	0	0.024381	1	6630	6630		37.159	4.3467	1	1753500			86858	8131	60456	60556	96435	96435					0.10031486654179389
VQESKRGLV	9	Unmodified	_VQESKRGLV_					0	0	0		MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant;nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MIA3|p.T1568Lfs*50|1|0.06|ENSG00000154305|chr1:222658815-222658816|-/CTGTCCTTTAGGAT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.81304931640625	2	508.298373	1014.58219	0.14766	7.5055E-05	3.5381	0.0017984	3.6858	0.0018735	508.30003088992873	77.049	1.0787	77.049	76.431	77.51	0					37	25	2	0	0	0	0.024457	1	9456	9456		37.159	7.3176	1	983970			86859	6400	60457	60557	96436	96436					0.07548547708870501
VQESTAHE	8	Unmodified	_VQESTAHE_					0	0	0		ENST00000258169.8_1_16:82197731-82203796:-|nuORF	ENST00000258169.8_1_16:82197731-82203796:-|nuORF	ENST00000258169.8_1_16:82197731-82203796:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.76068115234375	2	450.706514	899.398475	-0.90411	-0.00040749	0.9306	0.00041943	0.026491	1.194E-05	450.707591691835	38.987	0.43339	39.011	38.844	39.277	0.023727					18	11	2	0	0	0	0.027866	1	3274	3274		29.15	6.1071	1	305340			86860	11415	60458	60558	96437	96437					-0.055248457926495576
VQEYDEVY	8	Unmodified	_VQEYDEVY_					0	0	0			REV__ENST00000499638.6_1_12:121661214-121671021:+|nuORF	REV__ENST00000499638.6_1_12:121661214-121671021:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.3103637695312	2	522.729655	1043.44476	-0.76031	-0.00039744	-1.7265	-0.00090249	-2.4868	-0.0012999	522.728125993127	60.633	0.79382	60.42	60.079	60.873	-0.2134					38	20	3	0	0	0	0.027866	1	6984	6984		37.028	6.5248	1	297470	+		86861	33899	60459	60559	96438	96438					-0.07522825681212453
VQEYDEVY	8	Unmodified	_VQEYDEVY_					0	0	0			REV__ENST00000499638.6_1_12:121661214-121671021:+|nuORF	REV__ENST00000499638.6_1_12:121661214-121671021:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.3104248046875	2	522.729655	1043.44476	-2.0095	-0.0010504	-0.93363	-0.00048804	-2.9431	-0.0015385	522.7288851802135	60.268	0.59396	60.347	60.165	60.759	0.078884					30	15	3	0	0	0	0.027866	1	6887	6887		20.482	4.84	1	401760	+		86862	33899	60459	60559	96439	96439					-0.07522825681212453
VQFDPDSPET	10	Unmodified	_VQFDPDSPET_					0	0	0		nc|ENSG00000198909|Q99759-2|MAP3K3;ENSG00000198909|ENST00000361733|MAP3K3;ENSG00000169967|ENST00000682094|MAP3K2	nc|ENSG00000198909|Q99759-2|MAP3K3	nc|ENSG00000198909|Q99759-2|MAP3K3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.75439453125	2	567.751118	1133.48768	-0.56891	-0.000323	-1.5816	-0.00089797	-2.1505	-0.001221	568.2525270136114	50.158	0.35617	50.239	50.054	50.41	0.080994					14	10	2	0	0	0	0.03519	1	5171	5171		45.972	8.8131	1	294180			86863	10244	60460	60560	96440	96440					-0.07372055623818596
VQFFDKIY	8	Unmodified	_VQFFDKIY_					0	0	0			REV__ENST00000517608.5_1_8:74705439-74705553:-|nuORF	REV__ENST00000517608.5_1_8:74705439-74705553:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2772216796875	2	530.279118	1058.54368	-0.40857	-0.00021665	-3.8436	-0.0020382	-4.2522	-0.0022549	530.2771636805379	58.789	1.1291	58.601	58.136	59.265	-0.18795					85	27	4	0	0	0	0.50239	1	6455	6455		85.359	8.5128	1	15538000	+		86864	34219	60461	60561	96441	96441					0.01675242074338712
VQFFSGLEI	9	Unmodified	_VQFFSGLEI_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF;ENST00000515565.1_1_5:55135402-55135780:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2763671875	2	520.276575	1038.5386	-1.2395	-0.00064487	0.88556	0.00046074	-0.35391	-0.00018413	520.2767921133234	91.88	1.6616	91.88	91.133	92.794	0					86	39	4	0	0	0	0.03201	2	11631	11631;11643		139.97	49.601	1	1635600			86865	7978	60462	60562	96442;96443	96442					0.020869382117098212
VQFFSGLEI	9	Unmodified	_VQFFSGLEI_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF;ENST00000515565.1_1_5:55135402-55135780:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2763061523438	2	520.276575	1038.5386	-0.50137	-0.00026085	0.29353	0.00015272	-0.20785	-0.00010814	520.2765023409589	91.879	1.7295	91.871	90.956	92.686	-0.0082855					84	41	4	0	0	0	0.027092	2	11608	11598;11608		143.89	49.88	1	1875400			86866	7978	60462	60562	96444;96445	96445					0.020869382117098212
VQFFSGLEI	9	Unmodified	_VQFFSGLEI_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF;ENST00000515565.1_1_5:55135402-55135780:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;HNRNPH1|p.E174Nfs*7|1|0.26|ENSG00000169045|chr5:179619281-179619285|CTTTC/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2760009765625	2	520.276575	1038.5386	0.13719	7.1376E-05	-0.17532	-9.1213E-05	-0.038128	-1.9837E-05	520.2762067898617	91.899	1.4794	91.909	91.194	92.674	0.0094147					81	35	5	0	0	0	0.027092	2	11557	11557;11567		143.89	47.696	1	2226100			86867	7978	60462	60562	96446;96447	96446					0.020869382117098212
VQFGGFVK	8	Unmodified	_VQFGGFVK_					0	0	0			REV__ENSG00000114315|ENST00000232424|HES1	REV__ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.2477111816406	2	441.247621	880.480688	0.35919	0.00015849	-0.22112	-9.757E-05	0.13807	6.0921E-05	441.2474021101861	58.142	1.385	58.142	57.872	59.257	0					90	37	5	0	0	0	0.37125	2	6566	6557;6566		101.21	8.5128	1	12362000	+		86868	22115	60463	60563	96448;96449	96449					0.03566721076947488
VQFGGFVK	8	Unmodified	_VQFGGFVK_					0	0	0			REV__ENSG00000114315|ENST00000232424|HES1	REV__ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.2480163574219	2	441.247621	880.480688	-0.52451	-0.00023144	0.87444	0.00038584	0.34993	0.0001544	441.24782678432473	58.332	1.5571	58.148	57.887	59.444	-0.18357					90	42	4	0	0	0	0.37125	1	6575	6575		101.21	0	1	9996100	+		86869	22115	60463	60563	96450	96450					0.03566721076947488
VQFGGFVK	8	Unmodified	_VQFGGFVK_					0	0	0			REV__ENSG00000114315|ENST00000232424|HES1	REV__ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.24761962890625	2	441.247621	880.480688	-0.13477	-5.9468E-05	0.39646	0.00017494	0.26169	0.00011547	441.24766407816657	57.976	1.4143	58.067	57.797	59.211	0.091217					95	38	4	0	0	0	0.46709	2	6455	6455;6476		88.643	0	1	10910000	+		86870	22115	60463	60563	96451;96452	96451					0.03566721076947488
VQFLILIMA	9	Unmodified	_VQFLILIMA_					0	0	0			REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	REV__ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.81591796875	2	524.317189	1046.61982	-0.099289	-5.2059E-05	1.6786	0.00088009	1.5793	0.00082803	524.3179604044846	74.615	0.50539	74.339	74.132	74.638	-0.27573					20	11	2	0	0	0	0.024487	1	8792	8792		24.203	0	1	883650	+		86871	34001	60464	60564	96453	96453					0.0983792265012653
VQFLQYYYQ	9	Unmodified	_VQFLQYYYQ_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;ENST00000465989.1_1_7:75616979-75617289:-|nuORF;ENST00000440632.5_1_7:75616492-75617528:-|nuORF;ENST00000417509.5_1_7:75616545-75617528:-|nuORF;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	417.87481689453125	3	417.873001	1250.59717	0.1088	4.5463E-05	3.8704	0.0016173	3.9792	0.0016628	417.87460584341756	37.287	0.8061	37.094	36.774	37.58	-0.193					51	20	3	0	0	0	0.91321	1	2999	2999		31.53	0.46166	1	4957100			86872	9742;9785	60465	60565	96454	96454					-0.018100052138152023
VQFRQSVL	8	Unmodified	_VQFRQSVL_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7825927734375	2	488.782359	975.550165	-0.45318	-0.0002215	0.40317	0.00019706	-0.050009	-2.4443E-05	488.7824645004465	56.701	1.2546	56.534	55.962	57.216	-0.1672					91	32	4	0	0	0	0.845	1	6160	6160		55.504	2.1528	1	6790700			86873	16039	60466	60566	96455	96455					0.06141180025713311
VQFSCEDNY	9	Unmodified	_VQFSCEDNY_					0	0	0		nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	552.3145141601562	2	552.718764	1103.42298	-0.024199	-1.3375E-05	-0.056438	-3.1194E-05	-0.080637	-4.457E-05	552.7184785420689	53.553	1.0463	53.295	52.803	53.849	-0.25838					41	29	2	0	0	0	0.024447	1	5597	5597		40.778	24.305	1	210670			86874	9202	60467	60567	96456	96456					-0.12459953701454651
VQFVKSAPID	10	Unmodified	_VQFVKSAPID_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	552.2940673828125	2	552.308406	1102.60226	0.24039	0.00013277	-2.9316	-0.0016191	-2.6912	-0.0014864	552.3067485444051	103.01	0.48324	102.88	102.58	103.07	-0.12724					18	11	2	0	0	0	0.03519	1	12796	12796		65.465	29.847	1	135830	+		86875	24260	60468	60568	96457	96457					0.05506298648788288
VQFVKSAPID	10	Unmodified	_VQFVKSAPID_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	552.308406	1102.60226	-0.13576	-7.4979E-05	-2.7875	-0.0015396	-2.9233	-0.0016146	552.3067756183297	103.01	0.33107	102.88	102.71	103.05	-0.12783	-0.0025265	6.3426E-05	NaN	65.465	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81995	+		86876	24260	60468	60568							0.05506298648788288
VQFVLFIHIL	10	Unmodified	_VQFVLFIHIL_					0	0	0			REV__ENST00000531920.6_2_11:93528046-93528097:+|nuORF	REV__ENST00000531920.6_2_11:93528046-93528097:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.5425720214844	3	410.253265	1227.73797	-0.33597	-0.00013783	3.6719	0.0015064	3.336	0.0013686	410.25416286973336	22.398	0.27816	22.213	22.047	22.325	-0.18539					8	5	2	0	0	0	0.03519	1	771	771		30.318	18.682	1	8395.2	+		86877	34568	60469	60569	96458	96458					0.13320618230272885
VQGALLSH	8	Unmodified	_VQGALLSH_					0	0	0		nc|ENSG00000164113|Q96M93-3|ADAD1;nc|ENSG00000164113|Q96M93-2|ADAD1;ENSG00000164113|ENST00000296513|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.2273864746094	2	412.734877	823.455202	1.5877	0.0006553	-1.1173	-0.00046114	0.47043	0.00019416	412.7344717067329	36.729	0.48359	36.52	36.282	36.765	-0.2092					23	11	3	0	0	0	0.027866	1	2914	2914		29.15	4.9468	1	144530			86878	7215	60470	60570	96459	96459					0.036412465545254236
VQGANKQNI	9	Unmodified	_VQGANKQNI_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.2915954589844	2	486.267073	970.519593	-0.78709	-0.00038274	1.3157	0.00063981	0.52866	0.00025707	486.26762311622207	82.508	0.25805	82.534	82.358	82.616	0.025711					8	5	2	0	0	0	0.024405	1	10228	10228		44.117	1.7207	1	54127	+		86879	25231	60471	60571	96460	96460					0.03315401640657001
VQGDLETVC	9	Unmodified	_VQGDLETVC_					0	0	0			REV__ENSG00000143476|ENST00000366991|DTL	REV__ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.78814697265625	2	482.226225	962.437897	-1.0434	-0.00050313	-1.1161	-0.0005382	-2.1594	-0.0010413	482.2260343375774	30.082	0.72899	30.082	29.487	30.216	0					22	17	2	0	0	0	0.024457	1	1869	1869		21.96	0	1	46562	+		86880	24253	60472	60572	96461	96461					-0.0448246183344736
VQGDPAPPL	9	Unmodified	_VQGDPAPPL_					0	0	0			REV__ENST00000460830.1_1_9:140006993-140007673:-|nuORF	REV__ENST00000460830.1_1_9:140006993-140007673:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	447.2400207519531	2	447.239993	892.465432	0.73582	0.00032909	-1.168	-0.00052237	-0.43218	-0.00019329	447.23946512203395	54.505	1.7715	54.299	53.947	55.718	-0.20613					121	48	4	0	0	0	0.27161	1	5759	5759		79.451	8.0731	1	30226000	+		86881	32861	60473	60573	96462	96462					0.01489809489100935
VQGDSDYGWN	10	Unmodified	_VQGDSDYGWN_					0	0	0			REV__ENST00000565550.1_1_16:1828298-1832508:-|nuORF	REV__ENST00000565550.1_1_16:1828298-1832508:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.29638671875	2	570.73326	1139.45197	-0.1584	-9.0406E-05	1.0208	0.00058261	0.86241	0.00049221	570.7338177218477	60.755	1.0873	60.549	60.172	61.259	-0.20599					45	26	2	0	0	0	0.03519	1	6865	6865		14.137	11.208	1	274150	+		86882	35277	60474	60574	96463	96463					-0.11218093080810831
VQGDSDYGWN	10	Unmodified	_VQGDSDYGWN_					0	0	0			REV__ENST00000565550.1_1_16:1828298-1832508:-|nuORF	REV__ENST00000565550.1_1_16:1828298-1832508:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	570.73326	1139.45197	-0.73526	-0.00041964	1.5305	0.0008735	0.79523	0.00045387	570.7340095072808	60.656	1.1116	60.48	59.885	60.997	-0.1761	-0.059578	0.00027619	NaN	24.519	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235920	+		86883	35277	60474	60574							-0.11218093080810831
VQGHLKDL	8	Unmodified	_VQGHLKDL_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	454.7457580566406	2	455.261259	908.507966	-0.072824	-3.3154E-05	0.004331	1.9717E-06	-0.068493	-3.1182E-05	455.2611207524521	54.41	0.58011	54.41	54.214	54.794	0					24	16	2	0	0	0	0.027866	1	5915	5915		15.642	0.77694	1	554410	+		86884	20912	60475	60575	96464	96464					0.050052046173163944
VQGIGFCLIS	10	Unmodified	_VQGIGFCLIS_					0	0	0		ENST00000560676.5_3_15:86163091-86163151:+|nuORF	ENST00000560676.5_3_15:86163091-86163151:+|nuORF	ENST00000560676.5_3_15:86163091-86163151:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.7804565429688	2	518.778428	1035.5423	-0.14836	-7.6966E-05	4.1529	0.0021544	4.0046	0.0020775	518.7804261533511	25.234	0.61601	25.314	25.006	25.622	0.08009					43	14	4	0	0	0	1.0271	1	1141	1141		42.396	2.338	1	1418400			86885	16808	60476	60576	96465	96465					0.02595284713925139
VQGKRVVN	8	Unmodified	_VQGKRVVN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.2747497558594	2	450.274701	898.534849	-1.3767	-0.00061991	0.3574	0.00016093	-1.0193	-0.00045898	450.2748947618853	92.291	2.1676	92.147	91.661	93.828	-0.14356					203	50	6	0	0	0	1.0239	1	11378	11378		33.516	6.8227	1	56225000	+		86886	25017	60477	60577	96466	96466					0.08152313228515595
VQGLEEKLP	9	Unmodified	_VQGLEEKLP_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7682800292969	2	506.787307	1011.56006	-1.1034	-0.0005592	2.3308	0.0011812	1.2274	0.00062203	507.2918185740844	60.563	0.21771	60.563	60.401	60.619	0					7	5	2	0	0	0	0.024292	1	6947	6947		58.782	0	1	29519			86887	4932	60478	60578	96467	96467					0.05474323240423473
VQGMALITIT	10	Unmodified	_VQGMALITIT_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.779296875	2	523.79936	1045.58417	0.013083	6.8528E-06	-3.1486	-0.0016492	-3.1355	-0.0016424	523.7986682675914	78.762	0.21089	78.57	78.38	78.591	-0.1921					6	4	2	0	0	0	0.03519	1	9703	9703		20.947	0	1	46615	+		86888	25026	60479	60579	96468	96468					0.06319840402443333
VQGNRAAH	8	Unmodified	_VQGNRAAH_					0	0	0			REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.26458740234375	2	426.725375	851.436198	-0.28539	-0.00012178	4.1814	0.0017843	3.896	0.0016625	426.72695403078137	53.973	1.4046	53.826	53.275	54.679	-0.14723					57	39	2	0	0	0	0.027866	1	5846	5846		31.955	9.995	1	323740	+		86889	27931	60480	60580	96469	96469					0.004537099834578839
VQGNRAAH	8	Unmodified	_VQGNRAAH_					0	0	0			REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	427.26409912109375	2	426.725375	851.436198	0.41853	0.0001786	3.8283	0.0016336	4.2468	0.0018122	426.7266697440955	54.126	1.4548	53.928	53.312	54.767	-0.19739					75	41	2	0	0	0	0.027866	1	5716	5716		25.45	0	1	519950	+		86890	27931	60480	60580	96470	96470					0.004537099834578839
VQGQRNVY	8	Unmodified	_VQGQRNVY_					0	0	0			REV__ENST00000549935.6_1_12:54107863-54119026:-|nuORF	REV__ENST00000549935.6_1_12:54107863-54119026:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.25457763671875	2	482.253966	962.493378	0.079311	3.8248E-05	1.0898	0.00052556	1.1691	0.00056381	482.2544303545986	30.798	1.2356	30.646	30.298	31.534	-0.15231					58	30	2	0	0	0	0.95417	1	1965	1965		44.531	5.7249	1	2628500	+		86891	19948	60481	60581	96471	96471					0.010631324691757982
VQGRPQKT	8	Unmodified	_VQGRPQKT_					0	0	0		nc|ENSG00000107290|Q7Z333-4|SETX;nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX	nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-4|SETX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.2920227050781	2	457.264333	912.514114	-0.1032	-4.7192E-05	1.569	0.00071745	1.4658	0.00067026	457.2648023004849	94.153	1.4583	94.153	93.67	95.128	-0.00022888					96	34	4	0	0	0	0.027866	1	12049	12049		9.7057	0	1	1841200			86892	18157	60482	60582	96472	96472					0.054357228488470355
VQGRRLLY	8	Unmodified	_VQGRRLLY_					0	0	0			REV__ENST00000396936.5_1_14:24584803-24587275:+|nuORF	REV__ENST00000396936.5_1_14:24584803-24587275:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.8141174316406	2	502.803626	1003.5927	0.66884	0.0003363	2.2448	0.0011287	2.9137	0.001465	503.30615471757824	95.914	0.7719	95.916	95.181	95.953	0.0020752					22	17	2	0	0	0	0.027866	1	12149	12149		13.775	0	1	3093500	+		86893	21161	60483	60583	96473	96473					0.09104575153946826
VQGRTEPL	8	Unmodified	_VQGRTEPL_					0	0	0			REV__ENSG00000159164|ENST00000369146|SV2A	REV__ENSG00000159164|ENST00000369146|SV2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.7686462402344	2	450.250892	898.48723	-0.41547	-0.00018706	0.79465	0.00035779	0.37918	0.00017073	450.25097776648175	35.504	0.98839	35.291	34.56	35.548	-0.21246					43	24	3	0	0	0	0.027866	1	2694	2694		55.504	0	1	897570	+		86894	25237	60484	60584	96474	96474					0.03392614237657199
VQGTQQPQ	8	Unmodified	_VQGTQQPQ_					0	0	0		ENSG00000234906|ENST00000252490|APOC2	ENSG00000234906|ENST00000252490|APOC2	ENSG00000234906|ENST00000252490|APOC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2921142578125	2	443.224874	884.435195	0.51452	0.00022805	0.017486	7.7504E-06	0.53201	0.0002358	443.224796323122	37.085	0.63243	37.021	36.709	37.342	-0.063389					39	16	3	0	0	0	0.027866	1	2959	2959		49.442	10.635	1	669750			86895	10727	60485	60585	96475	96475					-0.011645491760873483
VQGTQQPQ	8	Unmodified	_VQGTQQPQ_					0	0	0		ENSG00000234906|ENST00000252490|APOC2	ENSG00000234906|ENST00000252490|APOC2	ENSG00000234906|ENST00000252490|APOC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.2919616699219	2	443.224874	884.435195	0.0056574	2.5075E-06	0.96925	0.0004296	0.97491	0.00043211	443.2252325899248	37.06	0.53971	37.092	36.838	37.377	0.032269					29	13	3	0	0	0	0.027866	1	2951	2951		27.882	4.8398	1	735150			86896	10727	60485	60585	96476	96476					-0.011645491760873483
VQGVNVTIN	9	Unmodified	_VQGVNVTIN_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.3009338378906	2	472.263999	942.513445	-0.63969	-0.0003021	-0.60247	-0.00028452	-1.2422	-0.00058663	472.26352168427616	38.399	0.55342	38.219	37.908	38.461	-0.17929					21	15	2	0	0	0	0.024427	1	3122	3122		19.997	13.684	1	322530			86897	8786	60486	60586	96477	96477					0.039888834091470926
VQGVNVTIN	9	Unmodified	_VQGVNVTIN_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	472.263999	942.513445	-0.50857	-0.00024018	0.99294	0.00046893	0.48436	0.00022875	472.26412011124967	38.269	0.39764	38.269	38.199	38.597	0	0.019628	0.0014227	NaN	19.997	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	551600			86898	8786	60486	60586							0.039888834091470926
VQGVNVTIN	9	Unmodified	_VQGVNVTIN_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	472.263999	942.513445	-0.39927	-0.00018856	-0.5543	-0.00026178	-0.95358	-0.00045034	472.26377142017867	38.21	0.50792	38.127	37.984	38.492	-0.082516	-0.12168	-3.8718E-05	NaN	19.997	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	737830			86899	8786	60486	60586							0.039888834091470926
VQGVNVTIN	9	Unmodified	_VQGVNVTIN_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.263999	942.513445	-1.1182	-0.00052809	-1.6824	-0.00079452	-2.8006	-0.0013226	472.26545540768194	38.474	0.99778	38.501	37.849	38.847	0.027275	0.25242	-0.0011042	NaN	19.997	55	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484550			86900	8786	60486	60586							0.039888834091470926
VQGVNVTIN	9	Unmodified	_VQGVNVTIN_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	472.263999	942.513445	-0.62626	-0.00029576	-0.47239	-0.00022309	-1.0986	-0.00051885	472.2640043631614	38.398	0.47669	38.176	38.021	38.498	-0.22149	-0.072705	3.8653E-05	NaN	19.997	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297000			86901	8786	60486	60586							0.039888834091470926
VQGVQNLQ	8	Unmodified	_VQGVQNLQ_					0	0	0		nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3	nc|ENSG00000172845|Q02447-4|SP3	nc|ENSG00000172845|Q02447-4|SP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2922668457031	2	443.243067	884.47158	0.43236	0.00019164	-1.1939	-0.00052921	-0.76159	-0.00033757	443.2431524349366	37.221	0.40091	37.158	36.941	37.342	-0.063389					14	10	2	0	0	0	0.027866	1	2971	2971		40.573	0	1	63028			86902	8314	60487	60587	96478	96478					0.024723277206248895
VQGVSKQVAR	10	Unmodified	_VQGVSKQVAR_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2974243164062	2	536.317097	1070.61964	-0.44458	-0.00023843	-3.191	-0.0017114	-3.6356	-0.0019498	536.3152314687612	74.86	1.4415	74.86	73.828	75.269	0					37	18	3	0	0	0	0.03519	1	9116	9116		87.696	12.653	1	343580			86903	15481	60488	60588	96479	96479					0.08715638974467765
VQGVSKQVAR	10	Unmodified	_VQGVSKQVAR_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.2974243164062	2	536.317097	1070.61964	0.93645	0.00050223	-4.3879	-0.0023533	-3.4514	-0.0018511	536.3145787598801	74.021	0.80843	74.021	73.784	74.593	0					34	18	2	0	0	0	0.03519	1	9116	9116		87.696	12.653	1	1191200			86904	15481	60488	60588	96480	96480					0.08715638974467765
VQGVSKQVAR	10	Unmodified	_VQGVSKQVAR_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.317097	1070.61964	-0.21904	-0.00011747	-3.3051	-0.0017726	-3.5242	-0.0018901	536.3152328765859	74.308	0.67563	74.049	73.817	74.492	-0.25887	0.090717	1.7993E-05	NaN	87.696	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1439100			86905	15481	60488	60588							0.08715638974467765
VQGVSKQVAR	10	Unmodified	_VQGVSKQVAR_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	536.317097	1070.61964	-1.1181	-0.00059964	-2.3196	-0.0012441	-3.4377	-0.0018437	536.3156577644913	73.978	0.68726	73.988	73.793	74.481	0.0096512	0.028853	0.0010751	NaN	87.696	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1419000			86906	15481	60488	60588							0.08715638974467765
VQGVSKQVAR	10	Unmodified	_VQGVSKQVAR_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.317097	1070.61964	-0.22755	-0.00012204	-3.5416	-0.0018994	-3.7691	-0.0020214	536.3150755166853	74.223	0.36966	73.946	73.85	74.219	-0.27661	-0.012809	-0.00023559	NaN	87.696	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658700			86907	15481	60488	60588							0.08715638974467765
VQGVSKQVAR	10	Unmodified	_VQGVSKQVAR_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.317097	1070.61964	-0.40135	-0.00021525	-3.0728	-0.001648	-3.4742	-0.0018633	536.31544952881	73.98	0.43315	73.79	73.478	73.911	-0.19027	-0.16898	0.00026718	NaN	87.696	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541510			86908	15481	60488	60588							0.08715638974467765
VQGWVVDPL	9	Unmodified	_VQGWVVDPL_					0	0	0			REV__ENST00000549030.1_1_14:105855527-105855722:+|nuORF	REV__ENST00000549030.1_1_14:105855527-105855722:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.8047790527344	2	506.776742	1011.53893	-0.40295	-0.0002042	-1.5329	-0.00077686	-1.9359	-0.00098106	507.2776804397913	89.507	0.41814	89.507	89.313	89.731	0					14	9	2	0	0	0	0.024021	1	11290	11290		58.782	2.0609	1	86902	+		86909	34889	60489	60589	96481	96481					0.03362357931564475
VQHEDLLAL	9	Unmodified	_VQHEDLLAL_					0	0	0			REV__ENSG00000106246|ENST00000292478|PTCD1	REV__ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.3265380859375	2	519.284931	1036.55531	0.039911	2.0725E-05	4.2474	0.0022056	4.2873	0.0022263	519.2870233522858	68.829	0.19173	68.537	68.442	68.634	-0.29267					9	4	3	0	0	0	0.021088	1	8228	8228		102.77	0	1	100230	+		86910	21602	60490	60590	96482	96482					0.03849439097643881
VQHLEIVVA	9	Unmodified	_VQHLEIVVA_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2978820800781	2	504.297842	1006.58113	-0.33973	-0.00017132	0.10589	5.34E-05	-0.23383	-0.00011792	504.2978054810556	61.944	0.94502	61.687	61.383	62.328	-0.25725					76	23	4	0	0	0	0.43973	1	6955	6955		63.306	2.3343	1	4849600			86911	7881	60491	60591	96483	96483					0.07810333339944009
VQHLVRGVY	9	Unmodified	_VQHLVRGVY_					0	0	0			REV__ENSG00000214654|ENST00000689072|B3GALT9	REV__ENSG00000214654|ENST00000689072|B3GALT9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	536.2973022460938	2	535.808908	1069.60326	-0.65844	-0.0003528	-0.40378	-0.00021635	-1.0622	-0.00056915	535.806818101499	28.52	0.77729	28.601	28.167	28.945	0.080812					48	18	4	0	0	0	0.024487	1	1646	1646		31.955	0	1	391700	+		86912	28782	60492	60592	96484	96484					0.07124557808378995
VQHQDALQI	9	Unmodified	_VQHQDALQI_					0	0	0		ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2791748046875	2	526.28018	1050.54581	-1.7635	-0.00092811	1.1758	0.00061879	-0.58774	-0.00030931	526.280684513306	44.006	0.92613	44.006	43.731	44.657	0					38	26	2	0	0	0	0.20652	3	4168	4154;4168;4181		88.177	16.299	1	5760200			86913	2897	60493	60593	96485;96486;96487	96486					0.022556708121328484
VQHQDALQI	9	Unmodified	_VQHQDALQI_					0	0	0		ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.279541015625	2	526.28018	1050.54581	-1.3177	-0.00069349	0.71833	0.00037804	-0.5994	-0.00031545	526.2804714461296	44.132	0.74884	43.988	43.71	44.459	-0.14471					33	21	2	0	0	0	0.16638	2	4172	4161;4172		95.815	13.575	1	5677900			86914	2897	60493	60593	96488;96489	96489					0.022556708121328484
VQHQDALQI	9	Unmodified	_VQHQDALQI_					0	0	0		ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	ENSG00000108424|ENST00000290158|KPNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2803344726562	2	526.28018	1050.54581	-0.15461	-8.1368E-05	0.25611	0.00013479	0.10151	5.342E-05	526.2799400272917	44.029	0.89956	44.066	43.781	44.681	0.0369					45	25	2	0	0	0	0.17845	2	4106	4106;4130		93.143	10.846	1	5440300			86915	2897	60493	60593	96490;96491	96490					0.022556708121328484
VQHRTMVPK	9	Unmodified	_VQHRTMVPK_					0	0	0		UBE3C|p.M438T|1|0.29|ENSG00000009335|chr7:157187003-157187003|T/C|missense_variant	UBE3C|p.M438T|1|0.29|ENSG00000009335|chr7:157187003-157187003|T/C|missense_variant	UBE3C|p.M438T|1|0.29|ENSG00000009335|chr7:157187003-157187003|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3203125	2	548.308218	1094.60188	1.9053	0.0010447	-2.026	-0.0011109	-0.12069	-6.6177E-05	548.8092513381999	19.087	0.24643	18.853	18.682	18.928	-0.23345					7	4	2	0	0	0	0.024523	1	352	352		29.15	6.1071	1	11324			86916	38123	60494	60594	96492	96492					0.05836600447969431
VQHRTMVPK	9	Unmodified	_VQHRTMVPK_					0	0	0		UBE3C|p.M438T|1|0.29|ENSG00000009335|chr7:157187003-157187003|T/C|missense_variant	UBE3C|p.M438T|1|0.29|ENSG00000009335|chr7:157187003-157187003|T/C|missense_variant	UBE3C|p.M438T|1|0.29|ENSG00000009335|chr7:157187003-157187003|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.2864990234375	2	548.308218	1094.60188	-0.61011	-0.00033453	2.8627	0.0015696	2.2526	0.0012351	548.3095727879971	77.015	0.78118	76.848	76.354	77.135	-0.16719					31	18	3	0	0	0	0.024427	1	9142	9142		26.693	0	1	711090			86917	38123	60494	60594	96493	96493					0.05836600447969431
VQHSIITDL	9	Unmodified	_VQHSIITDL_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.28515625	2	513.284931	1024.55531	0.6021	0.00030905	-0.65485	-0.00033613	-0.052754	-2.7078E-05	513.2845387790131	55.471	1.3079	55.471	54.831	56.139	0					53	36	2	0	0	0	0.091713	2	6122	6122;6134		113.41	22.635	1	6170100			86918	1254	60495	60595	96494;96495	96494					0.04401439097682669
VQHSIITDL	9	Unmodified	_VQHSIITDL_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.285400390625	2	513.284931	1024.55531	-0.16287	-8.3599E-05	0.033417	1.7152E-05	-0.12945	-6.6446E-05	513.2848771274909	55.517	1.1104	55.361	55.027	56.138	-0.15601					47	30	2	0	0	0	0.043667	2	6110	6110;6122		131.03	22.944	1	5630900			86919	1254	60495	60595	96496;96497	96496					0.04401439097682669
VQHSIITDL	9	Unmodified	_VQHSIITDL_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.2848510742188	2	513.284931	1024.55531	-1.3011	-0.00066782	1.1588	0.0005948	-0.14226	-7.3019E-05	513.2854271227922	55.18	1.6307	55.278	54.916	56.547	0.098015					58	44	2	0	0	0	0.091713	2	6013	6013;6025		113.41	10.638	1	6185600			86920	1254	60495	60595	96498;96499	96498					0.04401439097682669
VQHSQLGII	9	Unmodified	_VQHSQLGII_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.7871398925781	2	497.787641	993.56073	-0.59841	-0.00029788	0.4088	0.00020349	-0.18961	-9.4386E-05	497.7877540430637	60.899	0.89035	60.685	60.421	61.311	-0.21339					52	23	4	0	0	0	0.55828	1	6989	6989		55.504	2.1528	1	4143000	+		86921	28398;37672	60496	60596	96500	96500					0.0636916268015284
VQHSQLGII	9	Unmodified	_VQHSQLGII_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2;REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.78704833984375	2	497.787641	993.56073	-1.2608	-0.0006276	1.1267	0.00056084	-0.13411	-6.6761E-05	497.7880770920266	60.587	1.0045	60.666	60.318	61.322	0.078888					57	26	4	0	0	0	0.70186	1	6918	6918		45.952	0	1	4286200	+		86922	28398;37672	60496	60596	96501	96501					0.0636916268015284
VQIADGPRV	9	Unmodified	_VQIADGPRV_					0	0	0			REV__ENSG00000145375|ENST00000274008|SPATA5	REV__ENSG00000145375|ENST00000274008|SPATA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.3004150390625	2	477.771991	953.529429	-0.7868	-0.00037591	2.1648	0.0010343	1.378	0.00065837	477.77242178829437	33.38	0.32267	33.214	32.998	33.321	-0.16565					12	7	2	0	0	0	0.024397	1	2356	2356		39.253	8.9351	1	113020	+		86923	24405	60497	60597	96502	96502					0.0508058964603606
VQIEDAVFV	9	Unmodified	_VQIEDAVFV_					0	0	0			REV__PHYKPL|p.G251S|1|0.2|ENSG00000175309|chr5:178222531-178222531|C/T|missense_variant	REV__PHYKPL|p.G251S|1|0.2|ENSG00000175309|chr5:178222531-178222531|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2779235839844	2	510.274032	1018.53351	-0.49294	-0.00025153	4.0846	0.0020843	3.5917	0.0018327	510.27572257009126	73.325	1.8886	73.06	71.799	73.687	-0.26479					95	45	4	0	0	0	0.18915	1	8607	8607		90.777	5.8611	1	1546200	+		86924	26939	60498	60598	96503	96503					0.02498634349092299
VQIEKQCSM	9	Unmodified	_VQIEKQCSM_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2568359375	2	533.257002	1064.49945	-0.38981	-0.00020787	0.65412	0.00034881	0.26431	0.00014094	533.2571161577554	40.673	0.77465	40.673	40.414	41.189	0					41	21	4	0	0	0	0.50848	1	3605	3605		58.782	2.0609	1	2470700			86925	1373	60499	60599	96504	96504					-0.030218534058349178
VQIERPLF	8	Unmodified	_VQIERPLF_					0	0	0			REV__nc|ENSG00000139908|Q6SA08|TSSK4	REV__nc|ENSG00000139908|Q6SA08|TSSK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2903747558594	2	501.292559	1000.57057	0.11274	5.6515E-05	-4.3942	-0.0022028	-4.2815	-0.0021463	501.29026904779676	98.113	1.3182	98.113	97.727	99.045	0					53	30	2	0	0	0	0.96769	1	12531	12531		42.396	0	1	1822700	+		86926	23971	60500	60600	96505	96505					0.07030350685511166
VQIGPDVRKE	10	Unmodified	_VQIGPDVRKE_					0	0	0			REV__ENST00000274629.8_1_5:169810821-169812473:-|nuORF	REV__ENST00000274629.8_1_5:169810821-169812473:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.8226928710938	2	570.822212	1139.62987	-0.72362	-0.00041306	-0.091169	-5.2042E-05	-0.81479	-0.0004651	570.8222005781987	51.853	1.6926	51.853	51.431	53.124	0					140	45	6	0	0	0	0.66532	1	5501	5501		69.628	4.1622	1	15201000	+		86927	29835	60501	60601	96506	96506					0.06564201909031908
VQIGRLPSV	9	Unmodified	_VQIGRLPSV_					0	0	0		ENST00000560118.1_1_15:59732271-59738696:+|nuORF	ENST00000560118.1_1_15:59732271-59738696:+|nuORF	ENST00000560118.1_1_15:59732271-59738696:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	484.7980041503906	2	484.798009	967.581465	0.55749	0.00027027	-1.5757	-0.00076388	-1.0182	-0.00049361	484.7974330021583	58.805	1.5701	58.805	58.418	59.988	0					132	42	5	0	0	0	0.70156	1	6755	6755		45.972	0	1	98413000			86928	16794	60502	60602	96507	96507					0.09637753059803345
VQIKFKATI	9	Unmodified	_VQIKFKATI_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.3131103515625	2	524.331685	1046.64882	-0.41392	-0.00021703	-3.1339	-0.0016432	-3.5478	-0.0018602	524.3301583260187	73.493	0.3107	73.228	73.058	73.368	-0.26479					14	7	2	0	0	0	0.024487	1	8639	8639		17.365	10.172	1	130460	+		86929	27684	60503	60603	96508	96508					0.1273578327075029
VQINEVIRA	9	Unmodified	_VQINEVIRA_					0	0	0			REV__ENSG00000198074|ENST00000359579|AKR1B10	REV__ENSG00000198074|ENST00000359579|AKR1B10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.2451782226562	2	521.306198	1040.59784	-0.5825	-0.00030366	1.2962	0.00067572	0.7137	0.00037205	521.3057274928758	50.853	1.0482	50.853	50.274	51.323	0					40	29	2	0	0	0	0.024457	1	5301	5301		29.15	1.2673	1	154140	+		86930	28381	60504	60604	96509	96509					0.07916834225898128
VQINEVIRA	9	Unmodified	_VQINEVIRA_					0	0	0			REV__ENSG00000198074|ENST00000359579|AKR1B10	REV__ENSG00000198074|ENST00000359579|AKR1B10	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	521.306198	1040.59784	0.69425	0.00036191	1.7042	0.00088842	2.3985	0.0012503	521.3068391046205	51.33	0.38774	51.218	51.051	51.438	-0.11163	0.034733	-0.00066378	NaN	21.96	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150360	+		86931	28381	60504	60604							0.07916834225898128
VQINEVIRA	9	Unmodified	_VQINEVIRA_					0	0	0			REV__ENSG00000198074|ENST00000359579|AKR1B10	REV__ENSG00000198074|ENST00000359579|AKR1B10	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.306198	1040.59784	-0.80272	-0.00041846	3.843	0.0020034	3.0403	0.0015849	521.3079736683324	51.678	0.5347	51.409	51.085	51.62	-0.26903	0.22569	0.0015662	NaN	21.96	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136700	+		86932	28381	60504	60604							0.07916834225898128
VQINEVIRA	9	Unmodified	_VQINEVIRA_					0	0	0			REV__ENSG00000198074|ENST00000359579|AKR1B10	REV__ENSG00000198074|ENST00000359579|AKR1B10	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.306198	1040.59784	1.2758	0.00066509	1.705	0.00088881	2.9808	0.0015539	521.3067659280752	51.438	0.31287	51.254	51.099	51.412	-0.18405	0.070224	-0.000663	NaN	21.96	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115160	+		86933	28381	60504	60604							0.07916834225898128
VQIPLPEPQ	9	Unmodified	_VQIPLPEPQ_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.2764892578125	2	510.78985	1019.56515	-0.40843	-0.00020862	1.1368	0.00058068	0.7284	0.00037206	510.79008531193	73.311	0.79981	73.12	72.761	73.561	-0.19027					43	19	3	0	0	0	0.022832	1	8581	8581		71.877	8.5712	1	658130	+		86934	20084	60505	60605	96510	96510					0.05614627103034309
VQIPLPEPQ	9	Unmodified	_VQIPLPEPQ_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	510.78985	1019.56515	-0.73375	-0.00037479	1.4733	0.00075255	0.73956	0.00037776	510.79037305830775	73.295	0.51249	73.295	73.072	73.585	0	0.034405	0.00051672	NaN	71.877	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1483900	+		86935	20084	60505	60605							0.05614627103034309
VQIPLPEPQ	9	Unmodified	_VQIPLPEPQ_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	510.78985	1019.56515	-0.36171	-0.00018476	0.77876	0.00039778	0.41705	0.00021303	510.79021965128925	73.671	0.48717	73.399	73.09	73.577	-0.27126	0.13915	-0.00019281	NaN	71.877	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1138400	+		86936	20084	60505	60605							0.05614627103034309
VQIRKAPQ	8	Unmodified	_VQIRKAPQ_					0	0	0		ENSG00000118985|ENST00000237853|ELL2;ENST00000413990.1_1_1:158146977-158147493:-|nuORF	ENSG00000118985|ENST00000237853|ELL2;ENST00000413990.1_1_1:158146977-158147493:-|nuORF	ENST00000413990.1_1_1:158146977-158147493:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.7381896972656	2	470.290351	938.566149	-0.011	-5.1731E-06	3.8549	0.0018129	3.8439	0.0018077	470.2899693863013	22.783	0.46173	22.783	22.525	22.987	0					25	9	4	0	0	0	0.027866	1	848	848		12.207	0	1	75128			86937	13854;3716	60506	60606	96511	96511					0.09440886262598269
VQISQEQV	8	Unmodified	_VQISQEQV_					0	0	0		ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2926025390625	2	465.748182	929.481811	-0.89851	-0.00041848	0.82975	0.00038645	-0.068766	-3.2028E-05	465.7485624533848	60.491	1.1195	60.491	59.988	61.108	0					44	29	3	0	0	0	0.027866	1	7046	7046		29.15	0	1	354560			86938	16748	60507	60607	96512	96512					0.014248906551983964
VQISQEQV	8	Unmodified	_VQISQEQV_					0	0	0		ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	ENST00000558287.1_1_15:63632408-63634218:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	465.748182	929.481811	-0.48723	-0.00022693	0.33895	0.00015786	-0.14829	-6.9064E-05	465.74823823572353	60.803	0.6388	60.589	60.273	60.912	-0.21339	0.04932	-0.00024581	NaN	5.9211	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299110			86939	16748	60507	60607							0.014248906551983964
VQITTVMPL	9	Unmodified	_VQITTVMPL_					0	0	0			REV__nc|ENSG00000068079|P80217-2|IFI35	REV__nc|ENSG00000068079|P80217-2|IFI35	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.29058837890625	2	501.288628	1000.5627	0.64996	0.00032582	2.7059	0.0013565	3.3559	0.0016823	501.28994649750183	85.329	2.9599	85.179	84.33	87.29	-0.14967					138	69	2	0	0	0	0.85329	1	10576	10576		35.618	1.4457	1	10571000	+		86940	36466	60508	60608	96513	96513					0.06244455373735036
VQITTVMPL	9	Unmodified	_VQITTVMPL_					0	0	0			REV__nc|ENSG00000068079|P80217-2|IFI35	REV__nc|ENSG00000068079|P80217-2|IFI35	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2875671386719	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.39228	1	10587	10587		66.429	4.3219	1	10074000	+		86941	36466	60508	60608	96514	96514					0.06244455373735036
VQIVALVEPL	10	Unmodified	_VQIVALVEPL_					0	0	0			REV__ENSG00000135372|ENST00000257829|NAT10	REV__ENSG00000135372|ENST00000257829|NAT10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.297607421875	2	540.8368	1079.65905	1.0632	0.00057501	-1.5816	-0.00085541	-0.51847	-0.00028041	540.8357076191336	63.801	0.60614	63.846	63.619	64.225	0.045502					38	16	4	0	0	0	0.03519	1	7449	7449		56.721	0	1	721200	+		86942	23536	60509	60609	96515	96515					0.1224034620531711
VQIYIRLTG	9	Unmodified	_VQIYIRLTG_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8173828125	2	531.818941	1061.62333	-1.0622	-0.00056488	-2.4166	-0.0012852	-3.4788	-0.0018501	531.8176003056811	90.238	1.5018	90.083	89.264	90.766	-0.1552					77	35	3	0	0	0	0.82115	1	11033	11033		37.812	5.061	1	769910	+		86943	28647	60510	60610	96516	96516					0.09498308748311501
VQKAISEAGI	10	Unmodified	_VQKAISEAGI_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110922048-110962545:-|nuORF	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.2922058105469	2	508.292756	1014.57096	-0.31201	-0.00015859	0.19092	9.7041E-05	-0.12109	-6.155E-05	508.2927805593806	52.066	0.75118	52.066	51.803	52.554	0					55	19	4	0	0	0	0.24462	1	5559	5559		115.49	16.865	1	7041800			86944	18351	60511	60611	96517	96517					0.06425725614712974
VQKAISEAGI	10	Unmodified	_VQKAISEAGI_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110922048-110962545:-|nuORF	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.2922668457031	2	508.292756	1014.57096	-0.15399	-7.8271E-05	0.02249	1.1431E-05	-0.1315	-6.6839E-05	508.29267853687554	52.186	0.73626	52.038	51.711	52.447	-0.14735					50	19	4	0	0	0	0.14896	1	5553	5553		127.46	17.983	1	8216400			86945	18351	60511	60611	96518	96518					0.06425725614712974
VQKAISEAGI	10	Unmodified	_VQKAISEAGI_					0	0	0		nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110922048-110962545:-|nuORF	nc|ENSG00000144061|O15259|NPHP1	nc|ENSG00000144061|O15259|NPHP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.2925109863281	2	508.292756	1014.57096	-0.77796	-0.00039543	-0.41079	-0.0002088	-1.1888	-0.00060423	508.2919980678112	51.907	0.9561	51.999	51.754	52.71	0.091938					57	24	4	0	0	0	0.19121	1	5477	5477		122.18	9.7651	1	5545600			86946	18351	60511	60611	96519	96519					0.06425725614712974
VQKEFAFRKP	10	Unmodified	_VQKEFAFRKP_					0	0	0		ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	417.206787109375	3	417.239907	1248.69789	-0.80695	-0.00033669	-1.2164	-0.00050752	-2.0233	-0.00084421	417.23936929121635	26.361	0.82629	26.125	25.88	26.707	-0.23603					41	22	3	0	0	0	0.03519	1	1400	1400		19.263	0	1	385000			86947	9872	60512	60612	96520	96520					0.0834907155970086
VQKHAIPI	8	Unmodified	_VQKHAIPI_					0	0	0		nc|ENSG00000067048|O15523-2|DDX3Y;DDX3X|p.N414Kfs*20|1|0.16|ENSG00000215301|chrX:41345470-41345471|-/A|frameshift_variant;nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF	nc|ENSG00000067048|O15523-2|DDX3Y	nc|ENSG00000067048|O15523-2|DDX3Y	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	453.2818603515625	2	453.281995	904.549437	0.76109	0.00034499	-1.1367	-0.00051525	-0.37562	-0.00017026	453.28141950307884	49.208	1.5814	49.208	48.83	50.411	0					93	44	4	0	0	0	0.85409	1	5071	5071		54.765	0	1	8025700			86948	18066	60513	60613	96521	96521					0.09334385376666887
VQKIKAAS	8	Unmodified	_VQKIKAAS_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;ITSN2|p.E1544K|1|0.18|ENSG00000198399|chr2:24208285-24208285|C/T|missense_variant;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000198399|Q9NZM3-2|ITSN2	ENSG00000205726|ENST00000381318|ITSN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.554931640625	2	422.766178	843.517802	0.34245	0.00014478	0.12216	5.1646E-05	0.46461	0.00019642	422.76618446814786	23.713	1.0878	23.511	23.014	24.102	-0.20193					30	24	2	0	0	0	0.027866	1	1019	1019		25.45	7.1258	1	199540			86949	10440;10131	60514	60614	96522	96522					0.08978392622702813
VQKISIETN	9	Unmodified	_VQKISIETN_					0	0	0		ENSG00000121446|ENST00000294854|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1;nc|ENSG00000121446|A5PLK6-4|RGSL1;nc|ENSG00000121446|A5PLK6-5|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	ENSG00000121446|ENST00000294854|RGSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	517.2738647460938	2	516.290214	1030.56587	-0.70241	-0.00036265	-0.46829	-0.00024177	-1.1707	-0.00060442	516.2902416633424	45.255	1.5011	45.298	44.966	46.467	0.04388					101	43	6	0	0	0	0.024261	1	4386	4386		64.207	30.035	1	18746000			86950	3871	60515	60615	96523	96523					0.05181421752104143
VQKKIRSVE	9	Unmodified	_VQKKIRSVE_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.810791015625	2	543.835123	1085.65569	-0.76302	-0.00041496	3.3857	0.0018413	2.6227	0.0014263	543.8368592315564	43.767	0.91998	43.663	43.005	43.925	-0.10468					32	24	2	0	0	0	0.024418	1	4074	4074		30.318	7.2752	1	166260	+		86951	27186	60516	60616	96524	96524					0.11629096151318663
VQKKKAPQL	9	Unmodified	_VQKKKAPQL_					0	0	0			REV__ENST00000443213.5_1_2:38976634-38976703:-|nuORF	REV__ENST00000443213.5_1_2:38976634-38976703:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	520.7819213867188	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.47	1	107.34	106.84	107.84	-0.1346								0	0	0	0.68716	1	13340	13340		23.042	0	1		+		86952	32576	60517	60617	96525	96525					0.13718301502262875
VQKKTQILN	9	Unmodified	_VQKKTQILN_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3292846679688	2	536.329673	1070.64479	0.2552	0.00013687	-1.1829	-0.00063442	-0.92769	-0.00049755	536.3290875108421	18.974	1.6147	18.813	18.589	20.204	-0.16079					74	32	5	0	0	0	0.72494	1	397	397		44.377	3.599	1	7859700			86953	1870;18103	60518	60618	96526	96526					0.1122969377706795
VQKLIILSS	9	Unmodified	_VQKLIILSS_					0	0	0			REV__nc|ENSG00000143106|P28066-2|PSMA5	REV__nc|ENSG00000143106|P28066-2|PSMA5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.27716064453125	2	500.823692	999.632832	0.027153	1.3599E-05	-1.3046	-0.00065336	-1.2774	-0.00063977	500.82281972231056	61.435	0.75143	61.208	60.86	61.611	-0.22663					44	19	3	0	0	0	0.024381	1	7072	7072		55.504	7.8469	1	1807300	+		86954	24199	60519	60619	96527	96527					0.13300077033864
VQKLLGQFS	9	Unmodified	_VQKLLGQFS_					0	0	0		ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.756591796875	2	510.297842	1018.58113	-0.19689	-0.00010047	1.9764	0.0010085	1.7795	0.00090806	510.2988214287333	21.625	0.96716	21.435	20.98	21.947	-0.19072					28	19	2	0	0	0	0.024541	1	666	666		16.473	0	1	16207			86955	2799	60520	60620	96528	96528					0.07258333339962064
VQKLLLVM	8	Unmodified	_VQKLLLVM_					0	0	0		ENSG00000105856|ENST00000222574|HBP1;nc|ENSG00000105856|O60381-3|HBP1;nc|ENSG00000105856|O60381-2|HBP1	ENSG00000105856|ENST00000222574|HBP1	ENSG00000105856|ENST00000222574|HBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.3292236328125	2	472.304081	942.59361	2.809	0.0013267	1.2531	0.00059184	4.0621	0.0019185	472.30454407738534	18.527	0.49989	18.285	17.974	18.474	-0.24256					17	9	3	0	0	0	0.027866	1	310	310		7.6903	0	1	92526			86956	2730	60521	60621	96529	96529					0.12001653478637309
VQKRARAG	8	Unmodified	_VQKRARAG_					0	0	0			REV__ENSG00000169515|ENST00000307522|CCDC8	REV__ENSG00000169515|ENST00000307522|CCDC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.29205322265625	2	443.272493	884.530432	-0.04362	-1.9335E-05	-2.8708	-0.0012725	-2.9144	-0.0012919	443.27153127631505	37.008	0.27109	37.04	36.878	37.149	0.032272					12	6	2	0	0	0	0.027866	1	2938	2938		35.201	1.6851	1	90448	+		86957	26375	60522	60622	96530	96530					0.08354848805595338
VQKRLKTI	8	Unmodified	_VQKRLKTI_					0	0	0			REV__nc|ENSG00000263001|P78347-2|GTF2I	REV__nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.3056335449219	2	493.329476	984.6444	0.44085	0.00021748	-0.32611	-0.00016088	0.11474	5.6603E-05	493.32917263701216	69.411	0.26467	69.118	69.01	69.275	-0.29292					11	6	3	0	0	0	0.027866	1	8309	8309		11.511	0	1	240760	+		86958	29127	60523	60623	96531	96531					0.15146318847837392
VQKRVLEKTK	10	Unmodified	_VQKRVLEKTK_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1;ENST00000569825.1_1_16:70287541-70292096:-|nuORF	ENSG00000090861|ENST00000261772|AARS1;ENST00000569825.1_1_16:70287541-70292096:-|nuORF	ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.54290771484375	3	410.262712	1227.76631	0.028168	1.1556E-05	0.15236	6.2507E-05	0.18053	7.4063E-05	410.2627072535958	21.918	0.48063	21.728	21.42	21.9	-0.19072					21	9	3	0	0	0	0.03519	1	738	738		17.833	0	1	43903			86959	1941;17011	60524	60624	96532	96532					0.16153316139548224
VQKWHLRFS	9	Unmodified	_VQKWHLRFS_					0	0	0		ENST00000255641.12_1_19:1980677-1981289:+|nuORF	ENST00000255641.12_1_19:1980677-1981289:+|nuORF	ENST00000255641.12_1_19:1980677-1981289:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.8948059082031	3	400.89273	1199.65636	2.4567	0.00098489	2.4828	0.00099535	4.9396	0.0019802	400.89370501597745	26.311	0.66363	26.392	26.051	26.714	0.081293					49	15	4	0	0	0	0.56934	1	1274	1274		54.776	6.8168	1	2978300			86960	11391	60525	60625	96533	96533					0.06451935591030633
VQKWKFAL	8	Unmodified	_VQKWKFAL_					0	0	0		ENST00000336032.3_1_6:89793930-89794134:+|nuORF	ENST00000336032.3_1_6:89793930-89794134:+|nuORF	ENST00000336032.3_1_6:89793930-89794134:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7899475097656	2	510.30547	1018.59639	-0.54084	-0.00027599	-2.2365	-0.0011413	-2.7774	-0.0014173	510.8046503836396	82.079	0.66531	82.105	81.779	82.444	0.025719					30	15	4	0	0	0	0.027866	1	10210	10210		31.955	13.63	1	158640			86961	12399	60526	60626	96534	96534					0.08783244927781197
VQLAEQSL	8	Unmodified	_VQLAEQSL_					0	0	0			REV__ENST00000433152.8_2_10:67345559-67440743:+|nuORF	REV__ENST00000433152.8_2_10:67345559-67440743:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	444.2686767578125	2	444.245275	886.475997	-0.55857	-0.00024814	1.3526	0.00060088	0.79402	0.00035274	444.2457129800308	28.701	0.51705	28.532	28.294	28.812	-0.16897					19	11	2	0	0	0	0.027866	1	1703	1703		62.107	8.756	1	224640	+		86962	32396	60527	60627	96535	96535					0.028217921435157223
VQLAETYPV	9	Unmodified	_VQLAETYPV_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2775573730469	2	510.274032	1018.53351	-0.44665	-0.00022791	4.1747	0.0021302	3.7281	0.0019023	510.27573952891765	73.13	1.9277	72.94	71.756	73.683	-0.19026					94	46	4	0	0	0	0.35646	1	8568	8568		68.787	0	1	1427800	+		86963	22918	60528	60628	96536	96536					0.02498634349092299
VQLAQIQPL	9	Unmodified	_VQLAQIQPL_					0	0	0		ENST00000405746.1_1_6:72295335-72295494:+|nuORF	ENST00000405746.1_1_6:72295335-72295494:+|nuORF	ENST00000405746.1_1_6:72295335-72295494:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	504.7850341796875	2	505.305667	1008.59678	-0.28132	-0.00014215	2.7066	0.0013677	2.4253	0.0012255	505.3062542003869	98.632	0.64807	98.467	98.116	98.764	-0.1652					27	14	3	0	0	0	0.024457	1	12207	12207		29.15	13.508	1	66253			86964	13723	60529	60629	96537	96537					0.09282619856992369
VQLCSTILNV	10	Unmodified	_VQLCSTILNV_					0	0	0		ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	ENSG00000100652|ENST00000216540|SLC10A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.821044921875	2	545.302267	1088.58998	-0.37605	-0.00020506	-0.3145	-0.0001715	-0.69056	-0.00037656	545.3031968391925	98.809	0.4362	98.809	98.52	98.956	0					15	9	3	0	0	0	0.03519	1	12604	12604		80.455	18.347	1	35818			86965	2236	60530	60630	96538	96538					0.049229389141146385
VQLDTQGYL	9	Unmodified	_VQLDTQGYL_					0	0	0			REV__ENST00000548322.1_1_14:23424385-23424601:+|nuORF	REV__ENST00000548322.1_1_14:23424385-23424601:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7692260742188	2	518.769114	1035.52368	-0.36584	-0.00018978	0.71873	0.00037285	0.35289	0.00018307	518.7691715238684	65.904	0.82089	65.662	65.167	65.988	-0.24145					53	19	4	0	0	0	0.32811	1	7564	7564		71.877	9.7701	1	6341400	+		86966	34874	60531	60631	96539	96539					0.007334463437246086
VQLELSMSI	9	Unmodified	_VQLELSMSI_					0	0	0		ENST00000320895.9_1_5:1318406-1318487:-|nuORF	ENST00000320895.9_1_5:1318406-1318487:-|nuORF	ENST00000320895.9_1_5:1318406-1318487:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.276611328125	2	510.275718	1018.53688	-0.49293	-0.00025153	0.78168	0.00039887	0.28874	0.00014734	510.27572257009126	73.325	1.8886	73.06	71.799	73.687	-0.26479					95	45	4	0	0	0	0.14024	1	8625	8625		101.6	11.231	1	1546200			86967	12200	60532	60632	96540	96540					0.028355611314509588
VQLERSLK	8	Unmodified	_VQLERSLK_					0	0	0			REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	REV__nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7969055175781	2	486.795466	971.57638	0.60185	0.00029298	3.604	0.0017544	4.2059	0.0020474	486.7969195766796	59.637	0.55417	59.437	59.172	59.727	-0.20016					42	14	4	0	0	0	0.87148	1	6788	6788		53.351	0	1	3905600	+		86968	20893	60533	60633	96541	96541					0.08945449197176458
VQLFCQCIV	9	Unmodified	_VQLFCQCIV_					0	0	0			REV__ENST00000433686.6_1_19:58595608-58595722:-|nuORF	REV__ENST00000433686.6_1_19:58595608-58595722:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.787841796875	2	526.767006	1051.51946	-0.96157	-0.00050653	-2.8847	-0.0015196	-3.8463	-0.0020261	526.7641628071659	29.591	0.25182	29.346	29.229	29.481	-0.24524					7	5	2	0	0	0	0.024466	1	1818	1818		18.324	0	1	48904	+		86969	32411	60534	60634	96542	96542					-0.004240576752181369
VQLFLLPEL	9	Unmodified	_VQLFLLPEL_					0	0	0			REV__ENSG00000164645|ENST00000297203|TEX47	REV__ENSG00000164645|ENST00000297203|TEX47	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7994995117188	2	536.326068	1070.63758	-0.32919	-0.00017655	-3.0786	-0.0016512	-3.4078	-0.0018277	536.3245248770452	50.252	0.5659	49.973	49.766	50.332	-0.27977					24	14	3	0	0	0	0.024374	1	5077	5077		49.442	0	1	968450	+		86970	25785	60535	60635	96543	96543					0.10508961176606135
VQLFNRRR	8	Unmodified	_VQLFNRRR_					0	0	0		nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7|SYNPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.8036499023438	2	544.825424	1087.63629	-0.45363	-0.00024715	-0.9415	-0.00051295	-1.3951	-0.0007601	544.8248662185321	21.902	0.57461	21.712	21.42	21.994	-0.19072					18	11	2	0	0	0	0.027866	1	727	727		3.9852	0	1	35788			86971	18517	60536	60636	96544	96544					0.09598184651076735
VQLHNSLQI	9	Unmodified	_VQLHNSLQI_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2764282226562	2	526.298373	1050.58219	-0.12652	-6.6588E-05	0.0049411	2.6005E-06	-0.12158	-6.3988E-05	526.2978733031109	94.652	0.25808	94.656	94.446	94.704	0.0041199					7	5	2	0	0	0	0.024292	1	11969	11969		58.782	7.4465	1	20159	+		86972	25129	60537	60637	96545	96545					0.058925477088678235
VQLIHEKP	8	Unmodified	_VQLIHEKP_					0	0	0			REV__nc|ENSG00000157870|Q8TBF2-4|PRXL2B	REV__nc|ENSG00000157870|Q8TBF2-4|PRXL2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	482.2543640136719	2	482.284734	962.554916	0.056868	2.7426E-05	-1.0803	-0.000521	-1.0234	-0.00049357	482.2838991668081	30.966	0.37504	30.814	30.553	30.928	-0.15231					12	8	2	0	0	0	0.027866	1	1977	1977		29.15	0	1	76464	+		86973	25156	60538	60638	96546	96546					0.07214064168454115
VQLIISYLL	9	Unmodified	_VQLIISYLL_					0	0	0		ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.3156127929688	2	531.333893	1060.65323	-1.468	-0.00078	3.2297	0.001716	1.7617	0.00093604	531.3356604580271	65.052	0.84498	64.85	64.341	65.186	-0.20254					29	20	2	0	0	0	0.024541	1	7466	7466		14.865	0	1	150620			86974	8328	60539	60639	96547	96547					0.12533247693659177
VQLIISYLL	9	Unmodified	_VQLIISYLL_					0	0	0		ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.333893	1060.65323	-0.65252	-0.00034671	1.4476	0.00076918	0.79511	0.00042247	531.3345123405574	65.17	0.48633	64.936	64.687	65.174	-0.2345	0.042869	-0.00093083	NaN	39.253	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93702			86975	8328	60539	60639							0.12533247693659177
VQLILDQSW	9	Unmodified	_VQLILDQSW_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.302001953125	2	551.300581	1100.58661	-0.04747	-2.617E-05	-0.52915	-0.00029172	-0.57662	-0.00031789	551.3001461084996	70.414	1.312	70.157	69.768	71.08	-0.25713					69	33	4	0	0	0	0.46427	1	8185	8185		61.691	10.499	1	5831600	+		86976	28467	60540	60640	96548	96548					0.04034012131751297
VQLILDQSW	9	Unmodified	_VQLILDQSW_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3016357421875	2	551.300581	1100.58661	0.22032	0.00012146	-0.6173	-0.00034032	-0.39698	-0.00021886	551.30016995972	70.29	1.9192	70.076	69.73	71.65	-0.21425					82	48	4	0	0	0	0.18994	1	8165	8165		90.601	2.9044	1	6736700	+		86977	28467	60540	60640	96549	96549					0.04034012131751297
VQLILDQSW	9	Unmodified	_VQLILDQSW_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	551.300581	1100.58661	0.34981	0.00019285	-0.40367	-0.00022254	-0.053856	-2.9691E-05	551.3002369549852	70.211	1.772	70.211	69.832	71.604	0	0.012586	-2.3923E-05	NaN	90.601	109	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2055800	+		86978	28467	60540	60640							0.04034012131751297
VQLILDQSW	9	Unmodified	_VQLILDQSW_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	551.300581	1100.58661	0.4201	0.0002316	-0.46086	-0.00025407	-0.040754	-2.2468E-05	551.3002610110228	70.526	2.2139	70.233	69.836	72.05	-0.29292	0.035083	-8.6981E-05	NaN	90.601	120	60	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2564700	+		86979	28467	60540	60640							0.04034012131751297
VQLILDQSW	9	Unmodified	_VQLILDQSW_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	551.300581	1100.58661	-0.39368	-0.00021703	0.36266	0.00019994	-0.031012	-1.7097E-05	551.300649826128	70.302	2.4279	70.315	70.104	72.532	0.012421	0.11642	0.00082103	NaN	90.601	136	63	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2710700	+		86980	28467	60540	60640							0.04034012131751297
VQLKELLEKL	10	Unmodified	_VQLKELLEKL_					0	0	0		ENSG00000096070|ENST00000357641|BRPF3;ENST00000532538.1_1_6:36178988-36181650:+|nuORF	ENSG00000096070|ENST00000357641|BRPF3	ENSG00000096070|ENST00000357641|BRPF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.9228820800781	3	404.923585	1211.74892	0.50474	0.00020438	-3.0148	-0.0012208	-2.51	-0.0010164	404.92248495443243	26.246	2.9365	26.078	25.662	28.599	-0.16816					227	73	5	0	0	0	1.1237	1	1324	1324		29.551	3.4874	1	35253000			86981	2047	60541	60641	96550	96550					0.15151975813887475
VQLKKDLDA	9	Unmodified	_VQLKKDLDA_					0	0	0		nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2	nc|ENSG00000167767|Q6KB66-2|KRT80	nc|ENSG00000167767|Q6KB66-2|KRT80	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.3014526367188	2	515.300581	1028.58661	-0.39946	-0.00020584	-0.96946	-0.00049956	-1.3689	-0.0007054	515.2999527550235	62.566	0.73413	62.308	61.897	62.631	-0.25824					30	21	2	0	0	0	0.53979	1	7044	7044		56.721	1.9447	1	5933000		+	86982	536	60542	60642	96551	96551					0.07346012131756652
VQLKNRKW	8	Unmodified	_VQLKNRKW_					0	0	0			REV__ENST00000545251.6_1_1:175130206-175135705:-|nuORF	REV__ENST00000545251.6_1_1:175130206-175135705:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3424682617188	2	536.324725	1070.6349	-0.86359	-0.00046316	-0.99255	-0.00053233	-1.8561	-0.00099549	536.3243585783846	27.13	0.36636	27.117	26.911	27.277	-0.012983					17	9	2	0	0	0	0.027866	1	1455	1455		40.573	3.4135	1	307790	+		86983	34820	60543	60643	96552	96552					0.10240550562321005
VQLKNRKW	8	Unmodified	_VQLKNRKW_					0	0	0			REV__ENST00000545251.6_1_1:175130206-175135705:-|nuORF	REV__ENST00000545251.6_1_1:175130206-175135705:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.3422241210938	2	536.324725	1070.6349	-0.88377	-0.00047399	-0.11858	-6.3596E-05	-1.0023	-0.00053758	536.8294004175136	27.281	0.24816	27.125	27.018	27.266	-0.15664					9	5	3	0	0	0	0.027866	1	1479	1479		33.516	0	1	74602	+		86984	34820	60543	60643	96553	96553					0.10240550562321005
VQLLCESPN	9	Unmodified	_VQLLCESPN_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.7870178222656	2	501.749867	1001.48518	-0.59428	-0.00029818	-2.8393	-0.0014246	-3.4336	-0.0017228	501.7482967629	54.98	0.63988	55.078	54.807	55.447	0.098015					43	17	4	0	0	0	0.024292	1	5928	5928		32.812	0	1	1160400			86985	10617	60544	60644	96554	96554					-0.015501825624596677
VQLLDLSVD	9	Unmodified	_VQLLDLSVD_					0	0	0		ENST00000490962.1_1_3:72925982-72926321:-|nuORF	ENST00000490962.1_1_3:72925982-72926321:-|nuORF	ENST00000490962.1_1_3:72925982-72926321:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.3130187988281	2	501.279315	1000.54408	-0.0084576	-4.2396E-06	-0.087285	-4.3754E-05	-0.095743	-4.7994E-05	501.279300624592	77.509	0.58991	77.298	76.995	77.585	-0.21087					19	11	2	0	0	0	0.024367	1	9562	9562		52.937	0	1	286790			86986	15445	60545	60645	96555	96555					0.04382617003523137
VQLLHVLL	8	Unmodified	_VQLLHVLL_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	467.7388000488281	2	467.807845	933.601138	0.32756	0.00015324	-0.49176	-0.00023005	-0.1642	-7.6814E-05	467.8075284723241	23.757	0.64346	23.555	23.279	23.923	-0.20193					24	14	2	0	0	0	0.027866	1	950	950		8.8223	0	1	188960	+		86987	28318	60546	60646	96556	96556					0.13168129070550094
VQLLPCPM	8	Unmodified	_VQLLPCPM_					0	0	0			REV__VWA3B|p.A1087T|1|0.18|ENSG00000168658|chr2:98298008-98298008|G/A|missense_variant	REV__VWA3B|p.A1087T|1|0.18|ENSG00000168658|chr2:98298008-98298008|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7607727050781	2	450.737717	899.460881	-0.54285	-0.00024468	3.9603	0.0017851	3.4174	0.0015404	450.73930647802655	39.197	0.66753	39.098	38.914	39.582	-0.098755					25	18	2	0	0	0	0.027866	1	3339	3339		37.028	3.5355	1	227260	+		86988	26280	60547	60647	96557	96557					0.007128857503062136
VQLLPHVKL	9	Unmodified	_VQLLPHVKL_					0	0	0			REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.7879028320312	2	523.839677	1045.6648	-0.4211	-0.00022059	-0.19898	-0.00010423	-0.62008	-0.00032482	523.839410213455	61.075	1.4543	60.869	60.254	61.708	-0.20599					100	35	5	0	0	0	0.024323	1	6788	6788		53.351	12.779	1	5298500	+		86989	33827	60548	60648	96558	96558					0.14379489507655308
VQLLPHVKL	9	Unmodified	_VQLLPHVKL_					0	0	0			REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.7884521484375	2	523.839677	1045.6648	-0.86842	-0.00045491	0.081419	4.265E-05	-0.787	-0.00041226	523.8395829261929	60.909	1.3776	60.733	60.239	61.617	-0.1761					91	33	4	0	0	0	0.024323	1	6769	6769		44.117	3.5442	1	5364000	+		86990	33827	60548	60648	96559	96559					0.14379489507655308
VQLLPHVKL	9	Unmodified	_VQLLPHVKL_					0	0	0			REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7894287109375	2	523.839677	1045.6648	-0.69578	-0.00036448	-0.11555	-6.0528E-05	-0.81132	-0.000425	523.8394633670354	61.081	1.3343	60.827	60.336	61.671	-0.25373					88	32	4	0	0	0	0.024381	1	6775	6775		45.952	0	1	4397600	+		86991	33827	60548	60648	96560	96560					0.14379489507655308
VQLMKQNI	8	Unmodified	_VQLMKQNI_					0	0	0		nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;nc|ENSG00000153827|Q14669-4|TRIP12;TRIP12|p.F1697Wfs*24|1|0.14|ENSG00000153827|chr2:229778472-229778482|TAAGAAGCGAA/-|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669|TRIP12	nc|ENSG00000153827|Q14669|TRIP12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.7982177734375	2	487.278595	972.542637	-0.9072	-0.00044206	0.84067	0.00040964	-0.066532	-3.2419E-05	487.27904563265054	49.789	0.93806	49.864	49.465	50.403	0.074196					66	26	4	0	0	0	0.027866	1	5192	5192		18.324	0	1	2691300			86992	6362	60549	60649	96561	96561					0.0552670443378247
VQLRLNSI	8	Unmodified	_VQLRLNSI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.79022216796875	2	471.790184	941.565815	0.73565	0.00034707	-0.44722	-0.000211	0.28842	0.00013607	471.78988313953323	55.841	1.2453	55.841	55.5	56.745	0					70	34	3	0	0	0	0.15467	1	6189	6189		148.04	0	1	3889400			86993	2693	60550	60650	96562	96562					0.0926946654275298
VQLRLNSI	8	Unmodified	_VQLRLNSI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.78875732421875	2	471.790184	941.565815	0.22928	0.00010817	0.42089	0.00019857	0.65017	0.00030674	471.7901035951552	55.942	1.3846	55.786	55.404	56.788	-0.15601					96	37	4	0	0	0	0.28835	2	6183	6171;6183		116.9	0	1	3527200			86994	2693	60550	60650	96563;96564	96564					0.0926946654275298
VQLRLNSI	8	Unmodified	_VQLRLNSI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.78973388671875	2	471.790184	941.565815	-0.38425	-0.00018128	0.57963	0.00027346	0.19538	9.218E-05	471.79036618173706	55.602	1.3492	55.7	55.371	56.72	0.098015					68	36	3	0	0	0	0.23402	1	6079	6079		134.81	0	1	3416300			86995	2693	60550	60650	96565	96565					0.0926946654275298
VQLRSVATG	9	Unmodified	_VQLRSVATG_					0	0	0			REV__ENSG00000187492|ENST00000412678|CDHR4	REV__ENSG00000187492|ENST00000412678|CDHR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.2672424316406	2	465.771991	929.529429	1.0563	0.00049198	-3.0255	-0.0014092	-1.9692	-0.00091721	465.77056413451527	58.857	0.40128	58.67	58.5	58.902	-0.18705					25	10	3	0	0	0	0.024374	1	6653	6653		25.574	0	1	1265900	+		86996	27934	60551	60651	96566	96566					0.061845896460340555
VQLSGRGAEL	10	Unmodified	_VQLSGRGAEL_					0	0	0			REV__ENST00000461023.5_1_16:337901-338117:-|nuORF	REV__ENST00000461023.5_1_16:337901-338117:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2886352539062	2	515.288005	1028.56146	-0.55678	-0.0002869	0.027367	1.4102E-05	-0.52941	-0.0002728	515.2880152450967	40.101	1.9114	39.951	39.553	41.464	-0.1497					97	50	4	0	0	0	0.91678	1	3426	3426		52.937	1.6012	1	21703000	+		86997	32867	60552	60652	96567	96567					0.04831957329179204
VQLSGRGAEL	10	Unmodified	_VQLSGRGAEL_					0	0	0			REV__ENST00000461023.5_1_16:337901-338117:-|nuORF	REV__ENST00000461023.5_1_16:337901-338117:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.28857421875	2	515.288005	1028.56146	-0.11251	-5.7977E-05	0.2165	0.00011156	0.10398	5.3581E-05	515.2878389684613	40.259	1.3129	40.034	39.696	41.009	-0.225					100	34	6	0	0	0	0.69662	1	3438	3438		67.494	5.3863	1	20784000	+		86998	32867	60552	60652	96568	96568					0.04831957329179204
VQLSLRYS	8	Unmodified	_VQLSLRYS_					0	0	0			REV__ENSG00000160396|ENST00000291823|HIPK4	REV__ENSG00000160396|ENST00000291823|HIPK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2757568359375	2	483.274367	964.53418	-0.21365	-0.00010325	-0.33978	-0.00016421	-0.55343	-0.00026746	483.27428705124004	64.518	0.70891	64.518	64.311	65.02	0					43	18	3	0	0	0	0.6536	1	7599	7599		71.296	0	1	1972000	+		86999	25318	60553	60653	96569	96569					0.05049473788801606
VQLSPQMLYY	10	Unmodified	_VQLSPQMLYY_					0	0	0			REV__ENSG00000115365|ENST00000450366|LANCL1	REV__ENSG00000115365|ENST00000450366|LANCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.313720703125	2	621.315374	1240.6162	0.018917	1.1754E-05	-3.0174	-0.0018748	-2.9985	-0.001863	621.3134783770568	66.633	3.4513	66.385	66.061	69.512	-0.24839					161	90	2	0	0	0	0.79525	2	7678	7639;7678		60.972	4.2509	1	29011000	+		87000	22198	60554	60654	96570;96571	96571					0.005512080856078683
VQLSPQMLYY	10	Unmodified	_VQLSPQMLYY_					0	0	0			REV__ENSG00000115365|ENST00000450366|LANCL1	REV__ENSG00000115365|ENST00000450366|LANCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	621.3134155273438	2	621.315374	1240.6162	-1.4993	-0.00093152	-1.5442	-0.00095941	-3.0434	-0.0018909	621.314374088197	66.609	3.1171	66.385	66.066	69.183	-0.22374					198	81	3	0	0	0	0.82838	1	7722	7722		58.782	7.4465	1	29556000	+		87001	22198	60554	60654	96572	96572					0.005512080856078683
VQLSPQMLYY	10	Unmodified	_VQLSPQMLYY_					0	0	0			REV__ENSG00000115365|ENST00000450366|LANCL1	REV__ENSG00000115365|ENST00000450366|LANCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	621.3125	2	621.315374	1240.6162	-0.33526	-0.0002083	-2.6485	-0.0016456	-2.9838	-0.0018539	621.3137058247617	66.633	2.7371	66.388	66.05	68.787	-0.24517					138	72	2	0	0	0	0.65054	2	7662	7641;7662		71.296	7.0884	1	26099000	+		87002	22198	60554	60654	96573;96574	96574					0.005512080856078683
VQLTSTLFN	9	Unmodified	_VQLTSTLFN_					0	0	0			REV__ENSG00000131043|ENST00000320849|AAR2	REV__ENSG00000131043|ENST00000320849|AAR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.78033447265625	2	511.779482	1021.54441	-0.40689	-0.00020824	1.7948	0.00091853	1.3879	0.00071029	511.7803163207234	92.989	1.0225	92.989	92.665	93.687	0					52	23	3	0	0	0	0.48817	1	11808	11808		60.118	5.3419	1	877000	+		87003	23183	60555	60655	96575	96575					0.034500367233818
VQLTTGTVQ	9	Unmodified	_VQLTTGTVQ_					0	0	0			REV__ENSG00000103479|ENST00000262133|RBL2	REV__ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7637023925781	2	473.763832	945.513111	0.52302	0.00024779	-0.79548	-0.00037687	-0.27246	-0.00012908	473.7634056593197	23.146	1.0645	22.944	22.593	23.657	-0.20193					46	23	4	0	0	0	0.30449	1	906	906		75.043	1.0686	1	1696200	+		87004	21387	60556	60656	96576	96576					0.038174636892904346
VQMILLPQ	8	Unmodified	_VQMILLPQ_					0	0	0		ENST00000479131.5_1_1:40725123-40725192:+|nuORF	ENST00000479131.5_1_1:40725123-40725192:+|nuORF	ENST00000479131.5_1_1:40725123-40725192:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.80841064453125	2	471.278063	940.541574	0.59497	0.0002804	2.9975	0.0014127	3.5925	0.001693	471.2793167415263	40.995	1.2422	40.995	40.516	41.758	0					52	34	3	0	0	0	0.027866	1	3592	3592		57.811	0	1	600860			87005	15164	60557	60657	96577	96577					0.0689249006487671
VQMQEHSVL	9	Unmodified	_VQMQEHSVL_					0	0	0			REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8010864257812	2	535.768591	1069.52263	-1.0597	-0.00056774	0.5335	0.00028583	-0.52617	-0.00028191	535.7688276130091	40.598	2.9708	40.621	38.458	41.429	0.023003					144	82	2	0	0	0	0.024209	1	3660	3660		66.429	0.53182	1	1852100	+		87006	22388	60558	60658	96578	96578					-0.009350912968329794
VQMSKHVM	8	Oxidation (M)	_VQMSKHVM(Oxidation (M))_		VQMSKHVM(1)		VQM(-89)SKHVM(89)	0	0	1		ENST00000371627.4_1_10:93572781-93572859:+|nuORF	ENST00000371627.4_1_10:93572781-93572859:+|nuORF	ENST00000371627.4_1_10:93572781-93572859:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.2662658691406	2	488.241155	974.467757	-0.10328	-5.0424E-05	0.29809	0.00014554	0.19481	9.5114E-05	488.2414556151161	19.812	0.24547	19.651	19.48	19.725	-0.16079					5	4	2	0	0	0	0.027866	1	460	460		88.643	8.7036	2	8368			87007	13007	60559	60659	96579	96579		483			-0.020498013690939842
VQNAKQVNS	9	Unmodified	_VQNAKQVNS_					0	0	0		nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3	nc|ENSG00000117625|Q9P2K3|RCOR3	nc|ENSG00000117625|Q9P2K3|RCOR3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.25311279296875	2	494.26453	986.514508	-0.68599	-0.00033906	3.7281	0.0018427	3.0421	0.0015036	494.26586633553296	57.067	0.21806	56.9	56.714	56.932	-0.1672					8	5	2	0	0	0	0.024457	1	6203	6203		21.96	7.095	1	155530			87008	3648	60560	60660	96580	96580					0.0207109777804817
VQNALFVM	8	Unmodified	_VQNALFVM_					0	0	0		nc|ENSG00000225997|P0C604|OR4A8	nc|ENSG00000225997|P0C604|OR4A8	nc|ENSG00000225997|P0C604|OR4A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.7644348144531	2	461.246763	920.478974	-0.16327	-7.5308E-05	-2.4413	-0.001126	-2.6045	-0.0012013	461.2444829449435	21.678	0.29173	21.75	21.637	21.929	0.071487					10	5	3	0	0	0	0.027866	1	637	637		44.531	14.69	1	23154			87009	18735	60561	60661	96581	96581					0.015553439966879523
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2813720703125	2	515.282389	1028.55022	-0.63294	-0.00032614	-0.194	-9.9963E-05	-0.82693	-0.0004261	515.2824445580792	65.274	1.4239	65.274	64.8	66.224	0					146	38	5	0	0	0	0.013293	11	7721	7698;7709;7721;7733;7745;7757;7769;7782;7794;7807;7820		199.7	42.044	1	189450000			87010	9377	60562	60662	96582;96583;96584;96585;96586;96587;96588;96589;96590;96591;96592	96584					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2825317382812	2	515.282389	1028.55022	-0.54614	-0.00028142	-0.25682	-0.00013234	-0.80297	-0.00041375	515.2824241741833	65.577	1.51	65.304	64.825	66.335	-0.27282					146	41	5	0	0	0	0.012922	12	7727	7704;7715;7727;7739;7751;7763;7775;7787;7799;7812;7825;7838		214.23	52.332	1	170370000			87011	9377	60562	60662	96593;96594;96595;96596;96597;96598;96599;96600;96601;96602;96603;96604	96595					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2822875976562	2	515.282389	1028.55022	-0.62164	-0.00032032	-0.13059	-6.7292E-05	-0.75224	-0.00038761	515.282520907108	65.301	1.4639	65.338	64.78	66.244	0.037384					144	39	5	0	0	0	0.012922	12	7614	7614;7625;7637;7649;7661;7673;7685;7697;7709;7722;7733;7746		209.84	51.957	1	185700000			87012	9377	60562	60662	96605;96606;96607;96608;96609;96610;96611;96612;96613;96614;96615;96616	96605					0.03709135235044414
VQNFSNPHE	9	Unmodified	_VQNFSNPHE_					0	0	0		nc|ENSG00000158321|Q8WXX7-5|AUTS2;nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.30615234375	2	536.246338	1070.47812	-0.87703	-0.0004703	-0.61023	-0.00032723	-1.4873	-0.00079753	536.2462844640149	47.89	0.094799	47.89	47.843	47.938	0					4	2	2	0	0	0	0.024506	1	4849	4849		30.504	8.5438	1	1090000			87013	6663	60563	60663	96617	96617					-0.054297791186627364
VQNGKVIGV	9	Unmodified	_VQNGKVIGV_					0	0	0		nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2	nc|ENSG00000057608|P50395-2|GDI2	nc|ENSG00000057608|P50395-2|GDI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.7684326171875	2	457.276909	912.539266	1.168	0.00053408	-1.1752	-0.00053741	-0.0072721	-3.3254E-06	457.2762183230152	36.877	0.80072	36.877	36.578	37.379	0					38	20	3	0	0	0	0.024323	1	2967	2967		53.351	2.016	1	1065900			87014	1204	60564	60664	96618	96618					0.07949777651424483
VQNGKVIGV	9	Unmodified	_VQNGKVIGV_					0	0	0		nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2	nc|ENSG00000057608|P50395-2|GDI2	nc|ENSG00000057608|P50395-2|GDI2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.276909	912.539266	-0.0067657	-3.0938E-06	-0.16357	-7.4795E-05	-0.17033	-7.7889E-05	457.2767426390771	36.793	0.84056	36.831	36.579	37.419	0.038044	0.03114	0.00015581	NaN	60.972	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988170			87015	1204	60564	60664							0.07949777651424483
VQNIARQVSR	10	Unmodified	_VQNIARQVSR_					0	0	0		ENST00000602204.1_1_19:16980786-16982347:+|nuORF	ENST00000602204.1_1_19:16980786-16982347:+|nuORF	ENST00000602204.1_1_19:16980786-16982347:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.8421630859375	2	585.838728	1169.6629	-0.042198	-2.4721E-05	3.417	0.0020018	3.3748	0.0019771	585.8405935806946	53.076	0.77047	52.949	52.632	53.402	-0.12705					59	19	4	0	0	0	0.80817	1	5556	5556		60.118	8.7828	1	3319200			87016	17521	60565	60665	96619	96619					0.08485828751759072
VQNLQKAL	8	Unmodified	_VQNLQKAL_					0	0	0		nc|ENSG00000009844|Q9NP79-2|VTA1;ENSG00000009844|ENST00000367630|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7784423828125	2	457.276909	912.539266	0.13767	6.2953E-05	-0.26696	-0.00012207	-0.12929	-5.912E-05	457.2765382276108	42.67	0.60922	42.531	42.312	42.921	-0.13929					22	16	2	0	0	0	0.027866	1	3986	3986		42.474	10.52	1	420440			87017	864	60566	60666	96620	96620					0.07949777651424483
VQNLQKAL	8	Unmodified	_VQNLQKAL_					0	0	0		nc|ENSG00000009844|Q9NP79-2|VTA1;ENSG00000009844|ENST00000367630|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	457.276909	912.539266	0.60276	0.00027563	-0.60685	-0.0002775	-0.0040854	-1.8681E-06	457.2762819954074	42.507	0.60691	42.507	42.289	42.895	0	-0.044215	-0.00023243	NaN	33.516	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412360			87018	864	60566	60666							0.07949777651424483
VQNLQKAL	8	Unmodified	_VQNLQKAL_					0	0	0		nc|ENSG00000009844|Q9NP79-2|VTA1;ENSG00000009844|ENST00000367630|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	457.276909	912.539266	0.34637	0.00015839	-0.29295	-0.00013396	0.053418	2.4427E-05	457.27647362460414	42.59	0.5758	42.616	42.358	42.934	0.026012	0.064514	5.465E-05	NaN	33.516	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450760			87019	864	60566	60666							0.07949777651424483
VQNLQWVL	8	Unmodified	_VQNLQWVL_					0	0	0			REV__ENST00000503391.5_1_4:84200159-84205721:-|nuORF	REV__ENST00000503391.5_1_4:84200159-84205721:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.2825622558594	2	500.284734	998.554916	-0.090688	-4.537E-05	-3.866	-0.0019341	-3.9567	-0.0019795	500.28273666409433	102.65	0.55813	102.48	102.2	102.76	-0.1704					36	12	4	0	0	0	1.0572	1	12738	12738		28.254	1.4582	1	562690	+		87020	33954	60567	60667	96621	96621					0.05558064168462806
VQNPQAQTI	9	Unmodified	_VQNPQAQTI_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7668151855469	2	499.766906	997.519259	0.29006	0.00014496	-0.28273	-0.0001413	0.0073311	3.6638E-06	499.7667228132969	40.52	1.1145	40.52	40.212	41.326	0					62	31	4	0	0	0	0.014034	3	3572	3563;3572;3583		166.68	74.144	1	5452100			87021	9454	60568	60668	96622;96623;96624	96623					0.020399819208023473
VQNPQAQTI	9	Unmodified	_VQNPQAQTI_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.76690673828125	2	499.766906	997.519259	0.7339	0.00036678	-0.70743	-0.00035355	0.026466	1.3227E-05	499.7665238930581	40.647	0.888	40.524	40.267	41.155	-0.12317					51	24	4	0	0	0	0.013333	3	3563	3563;3575;3586		176.41	73.637	1	5159600			87022	9454	60568	60668	96625;96626;96627	96625					0.020399819208023473
VQNPQAQTI	9	Unmodified	_VQNPQAQTI_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7665100097656	2	499.766906	997.519259	-0.41544	-0.00020762	0.59527	0.0002975	0.17983	8.9873E-05	499.76720258789373	40.591	0.93653	40.614	40.387	41.324	0.023006					65	26	5	0	0	0	0.0152	3	3540	3528;3540;3554		191.63	87.569	1	6728300			87023	9454	60568	60668	96628;96629;96630	96629					0.020399819208023473
VQNPRAEDL	9	Unmodified	_VQNPRAEDL_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.301513671875	2	521.269813	1040.52507	-1.4116	-0.00073582	1.3633	0.00071063	-0.048315	-2.5185E-05	521.2727900634377	60.688	0.26774	60.767	60.611	60.879	0.078884					9	6	2	0	0	0	0.023655	1	6910	6910		69.628	7.5202	1	30983			87024	4130	60569	60669	96631	96631					0.006430804324736528
VQNQQSLI	8	Unmodified	_VQNQQSLI_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	465.2561340332031	2	465.256174	928.497795	1.3734	0.000639	-1.4759	-0.00068665	-0.10242	-4.7653E-05	465.2555335000608	59.394	0.80378	59.194	58.923	59.727	-0.20016					81	21	5	0	0	0	0.845	1	6760	6760		55.504	2.1528	1	14947000			87025	3826	60570	60670	96632	96632					0.03068596892092046
VQNRLSSLI	9	Unmodified	_VQNRLSSLI_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.3078002929688	2	515.306198	1028.59784	-0.89112	-0.0004592	3.6288	0.0018699	2.7377	0.0014107	515.3079336425991	62.916	0.7856	62.676	62.419	63.204	-0.23926					34	18	2	0	0	0	0.31037	2	7295	7295;7319		74.255	3.2353	1	6154100	+		87026	33474	60571	60671	96633;96634	96633					0.08468834225914179
VQNVAAGDPTT	11	Unmodified	_VQNVAAGDPTT_					0	0	0			REV__ENST00000264144.4_1_1:183177117-183184644:+|nuORF	REV__ENST00000264144.4_1_1:183177117-183184644:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.8040771484375	2	536.767103	1071.51965	-0.024648	-1.323E-05	-1.0073	-0.00054069	-1.032	-0.00055392	537.2687776197095	66.15	0.1963	66.15	65.987	66.184	0					7	4	2	0	0	0	0.024756	1	7854	7854		22.58	0	1	168430	+		87027	29713	60572	60672	96635	96635					-0.013246431499965183
VQPARGTQ	8	Unmodified	_VQPARGTQ_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	428.7851257324219	2	428.735409	855.456264	-0.14385	-6.1672E-05	-1.6673	-0.00071484	-1.8112	-0.00077651	428.73507729102874	27.017	0.59658	26.86	26.464	27.061	-0.15664					22	13	3	0	0	0	0.027866	1	1399	1399		29.15	25.465	1	67088	+		87028	24948	60573	60673	96636	96636					0.02275460923431183
VQPARGTQ	8	Unmodified	_VQPARGTQ_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	428.735409	855.456264	0.0057463	2.4636E-06	-1.6323	-0.00069982	-1.6266	-0.00069736	428.7346776220791	26.913	0.66966	26.745	26.262	26.931	-0.16816	-0.057784	1.4956E-05	NaN	21.96	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53048	+		87029	24948	60573	60673							0.02275460923431183
VQPCVPILK	9	Unmodified	_VQPCVPILK_					0	0	0			REV__ENST00000518485.5_1_8:125506072-125516651:-|nuORF	REV__ENST00000518485.5_1_8:125506072-125516651:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.80010986328125	2	498.799163	995.583773	-0.80877	-0.00040342	3.5564	0.0017739	2.7477	0.0013705	498.8008791584376	28.741	0.9637	28.741	28.406	29.37	0					56	23	4	0	0	0	0.29158	1	1697	1697		76.774	2.7994	1	2925300	+		87030	34237	60574	60674	96637	96637					0.08580465473255572
VQPGGPPRGE	10	Unmodified	_VQPGGPPRGE_					0	0	0		ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	ENSG00000130589|ENST00000467148|HELZ2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2956848144531	2	497.259248	992.503943	-0.27734	-0.00013791	0.74736	0.00037163	0.47002	0.00023372	497.2597014076238	41.524	0.27267	41.296	41.082	41.355	-0.2278					9	6	2	0	0	0	0.03519	1	3637	3637		49.442	0	1	86747			87031	4432	60575	60675	96638	96638					0.007391151236220139
VQPGKRLR	8	Unmodified	_VQPGKRLR_					0	0	0		ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.3037109375	2	477.303793	952.593033	2.6841	0.0012811	-2.9481	-0.0014071	-0.26392	-0.00012597	477.30228111537434	18.735	0.68918	18.735	18.529	19.218	0					39	13	5	0	0	0	0.71833	1	331	331		65.803	15.779	1	596210			87032	2731	60576	60676	96639	96639					0.11483994873799475
VQPGRPVS	8	Unmodified	_VQPGRPVS_					0	0	0		CDKN2A|p.A147Pfs*46|1|0.76|ENSG00000147889|chr9:21970920-21970920|C/-|frameshift_variant	CDKN2A|p.A147Pfs*46|1|0.76|ENSG00000147889|chr9:21970920-21970920|C/-|frameshift_variant	CDKN2A|p.A147Pfs*46|1|0.76|ENSG00000147889|chr9:21970920-21970920|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.2405700683594	2	420.240327	838.466101	0.025647	1.0778E-05	0.13506	5.6758E-05	0.16071	6.7536E-05	420.24039506050974	37.371	1.4723	37.161	36.525	37.998	-0.2092					111	38	4	0	0	0	0.91956	1	3017	3017		49.442	1.7842	1	15941000			87033	245	60577	60677	96640	96640					0.040406489287988734
VQPHDLGK	8	Unmodified	_VQPHDLGK_					0	0	0		HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant;ENSG00000144381|ENST00000388968|HSPD1;ENST00000388967.3_1_3:36809128-36809431:-|nuORF	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	HSPD1|p.L404*|1|0.3|ENSG00000144381|chr2:197489008-197489008|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.2350158691406	2	447.245609	892.476666	-0.1369	-6.1226E-05	0.51948	0.00023233	0.38258	0.00017111	447.24571453015665	37.302	0.7356	37.093	36.844	37.58	-0.2092					42	18	3	0	0	0	0.027866	1	3046	3046		37.159	12.956	1	549440			87034	5732	60578	60678	96641	96641					0.026126315832470937
VQPKMTTCL	9	Unmodified	_VQPKMTTCL_					0	0	0			REV__ENST00000396389.5_1_6:30690338-30690733:+|nuORF	REV__ENST00000396389.5_1_6:30690338-30690733:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7640380859375	2	510.764463	1019.51437	-0.36984	-0.0001889	0.49665	0.00025367	0.12682	6.4775E-05	510.76462508879587	25.704	0.62082	25.533	25.247	25.867	-0.17078					38	15	4	0	0	0	0.59099	1	1253	1253		53.351	0	1	1468100	+		87035	31730	60579	60679	96642	96642					0.005396384621690231
VQPLIEAL	8	Unmodified	_VQPLIEAL_					0	0	0		ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7681884765625	2	441.768386	881.522219	-0.32178	-0.00014215	-0.70805	-0.00031279	-1.0298	-0.00045495	441.7681351071089	102.79	1.3357	102.79	102.48	103.82	0					96	32	5	0	0	0	1.0574	1	13170	13170		25.45	0	1	28165000			87036	9777	60580	60680	96643	96643					0.07671857045602337
VQPLPISTII	10	Unmodified	_VQPLPISTII_					0	0	0		ENSG00000174579|ENST00000309993|MSL2;nc|ENSG00000174579|Q9HCI7-2|MSL2	ENSG00000174579|ENST00000309993|MSL2	ENSG00000174579|ENST00000309993|MSL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8097534179688	2	540.8368	1079.65905	0.91447	0.00049458	-1.2102	-0.00065455	-0.29578	-0.00015997	540.8358766989145	63.796	0.54013	63.796	63.522	64.062	0					32	14	3	0	0	0	0.03519	1	7484	7484		51.335	0	1	619510			87037	8483	60581	60681	96644	96644					0.12240346205339847
VQPLSLLLA	9	Unmodified	_VQPLSLLLA_					0	0	0		ENSG00000254470|ENST00000532090|AP5B1;AP5B1|p.C829Lfs*32|1|0.48|ENSG00000254470|chr11:65778008-65778009|-/G|frameshift_variant	ENSG00000254470|ENST00000532090|AP5B1	ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.2847900390625	2	477.305136	952.595718	-0.82943	-0.00039589	1.4448	0.00068963	0.6154	0.00029374	477.3056712007039	55.279	0.51576	55.377	55.083	55.598	0.098015					22	13	2	0	0	0	0.024541	1	6050	6050		12.207	0	1	174880			87038	102	60582	60682	96645	96645					0.11752405488084605
VQPMLGPE	8	Unmodified	_VQPMLGPE_					0	0	0			REV__nc|ENSG00000173818|Q8N8Q3-6|ENDOV	REV__nc|ENSG00000173818|Q8N8Q3-6|ENDOV	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	434.77996826171875	2	435.723121	869.431689	-1.1107	-0.00048398	-3.1072	-0.0013539	-4.2179	-0.0018379	435.72174741223705	38.938	0.45349	38.774	38.554	39.008	-0.16458					19	12	2	0	0	0	0.027866	1	3283	3283		17.365	0	1	200080	+		87039	36950	60583	60683	96646	96646					-0.008249352743064264
VQPPIPPKP	9	Unmodified	_VQPPIPPKP_					0	0	0			REV__ENSG00000174705|ENST00000311601|SH3PXD2B	REV__ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2872619628906	2	486.797478	971.580402	-0.43925	-0.00021383	-1.0692	-0.0005205	-1.5085	-0.00073432	486.7954257769469	28.963	0.86066	28.794	28.212	29.073	-0.16927					28	19	2	0	0	0	0.024457	1	1732	1732		37.159	17.799	1	83637	+		87040	26886	60584	60684	96647	96647					0.09347538690894908
VQPPIPPKP	9	Unmodified	_VQPPIPPKP_					0	0	0			REV__ENSG00000174705|ENST00000311601|SH3PXD2B	REV__ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.797478	971.580402	-1.2001	-0.0005842	-5.2833	-0.0025719	-6.4834	-0.0031561	486.79327156395914	29.082	0.68287	29.082	28.613	29.296	0	0.14389	-0.002402	NaN	35.618	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100070	+		87041	26886	60584	60684							0.09347538690894908
VQPPVELFV	9	Unmodified	_VQPPVELFV_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.2946166992188	2	514.294768	1026.57498	0.25122	0.0001292	-0.65303	-0.00033585	-0.40181	-0.00020665	514.2942510862252	86.539	1.1111	86.539	85.998	87.109	0					44	25	2	0	0	0	0.16468	2	10864	10864;10876		96.19	32.884	1	1614500			87042	5576	60585	60685	96648;96649	96648					0.0627581510843811
VQPPVELFV	9	Unmodified	_VQPPVELFV_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.2943725585938	2	514.294768	1026.57498	-0.029068	-1.495E-05	-0.30381	-0.00015625	-0.33288	-0.0001712	514.2944344851761	86.502	0.94294	86.457	85.947	86.889	-0.045097					40	21	2	0	0	0	0.42604	3	10840	10829;10840;10854		64.207	18.004	1	1530100			87043	5576	60585	60685	96650;96651;96652	96651					0.0627581510843811
VQPPVELFV	9	Unmodified	_VQPPVELFV_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	514.29443359375	2	514.294768	1026.57498	-0.77719	-0.00039971	0.25314	0.00013019	-0.52406	-0.00026952	514.2947055505554	86.432	0.90032	86.456	86.029	86.93	0.023666					39	20	2	0	0	0	0.29158	3	10781	10771;10781;10807		76.774	25.439	1	1490700			87044	5576	60585	60685	96653;96654;96655	96654					0.0627581510843811
VQPRFDKAR	9	Unmodified	_VQPRFDKAR_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9;AK9|p.M1006Vfs*17|1|0.26|ENSG00000155085|chr6:109546075-109546076|AT/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-3|AK9	ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.2742309570312	2	558.817264	1115.61998	-0.33215	-0.00018561	1.9305	0.0010788	1.5984	0.0008932	558.8187004520563	96.366	0.76578	96.366	96.115	96.881	0					33	17	3	0	0	0	0.024477	1	12312	12312		20.947	0.95016	1	170120			87045	6450;18397	60586	60686	96656	96656					0.06679058694317064
VQPRFDKAR	9	Unmodified	_VQPRFDKAR_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9;AK9|p.M1006Vfs*17|1|0.26|ENSG00000155085|chr6:109546075-109546076|AT/-|frameshift_variant;nc|ENSG00000155085|Q5TCS8-3|AK9	ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.817264	1115.61998	0.3708	0.00020721	1.5568	0.00086996	1.9276	0.0010772	558.8182260333302	96.288	0.90111	96.294	96.068	96.969	0.0065079	-0.0051074	0.00016864	NaN	19.997	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272630			87046	6450;18397	60586	60686							0.06679058694317064
VQPRLESLV	9	Unmodified	_VQPRLESLV_					0	0	0		ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.766357421875	2	520.808574	1039.60259	-0.43357	-0.00022581	-0.1321	-6.8798E-05	-0.56567	-0.00029461	520.8084538564544	47.531	0.31852	47.434	47.239	47.558	-0.096649					12	8	2	0	0	0	0.023635	1	4660	4660		76.774	43.259	1	232520			87047	6072	60587	60687	96657	96657					0.08437718368645619
VQPRNKATI	9	Unmodified	_VQPRNKATI_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	REV__nc|ENSG00000130518|Q9H0B3-5|IQCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7841186523438	2	513.806365	1025.59818	-0.46505	-0.00023894	-0.58503	-0.00030059	-1.0501	-0.00053954	514.3065573802065	73.481	0.35374	73.217	72.977	73.331	-0.26479					10	8	2	0	0	0	0.024495	1	8633	8633		26.693	0	1	61080	+		87048	23119	60588	60688	96658	96658					0.08640253945759468
VQPRPGPEW	9	Unmodified	_VQPRPGPEW_					0	0	0			REV__ENST00000544935.5_1_7:589271-589664:-|nuORF	REV__ENST00000544935.5_1_7:589271-589664:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.2755737304688	2	533.277441	1064.54033	-0.36181	-0.00019295	-3.2795	-0.0017489	-3.6413	-0.0019418	533.2757172909337	49.852	1.8505	49.701	49.482	51.333	-0.1512					73	52	3	0	0	0	0.27161	1	5147	5147		79.451	1.5072	1	2988600	+		87049	34815	60589	60689	96659	96659					0.010639920203402653
VQPRRLLQRIR	11	Unmodified	_VQPRRLLQRIR_					0	0	0			REV__nc|ENSG00000167612|Q7Z3H0-1|ANKRD33	REV__nc|ENSG00000167612|Q7Z3H0-1|ANKRD33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	478.7929992675781	3	478.975788	1433.90553	0.33391	0.00015993	-2.6542	-0.0012713	-2.3203	-0.0011114	478.97444957853895	49.411	0.90415	49.229	48.883	49.787	-0.18206					47	23	3	0	0	0	0.02486	1	4938	4938		5.4129	0	1	298170	+		87050	26162	60590	60690	96660	96660					0.2059369854760007
VQPSAEDPNL	10	Unmodified	_VQPSAEDPNL_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.260986328125	2	535.261653	1068.50875	-0.38331	-0.00020517	-1.4618	-0.00078245	-1.8451	-0.00098762	535.2609549621018	24.492	1.7442	24.277	23.954	25.698	-0.2151					108	40	5	0	0	0	0.83673	2	1090	1090;1103		58.23	8.7884	1	25489000	+		87051	28443	60591	60691	96661;96662	96661					-0.02276045524286019
VQPSAEDPNL	10	Unmodified	_VQPSAEDPNL_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.2608032226562	2	535.261653	1068.50875	-0.54094	-0.00028954	-1.1183	-0.0005986	-1.6593	-0.00088814	535.2611466120588	24.285	1.5811	24.11	23.786	25.367	-0.17484					100	36	5	0	0	0	0.77808	1	1041	1041		62.107	6.6032	1	23335000	+		87052	28443	60591	60691	96663	96663					-0.02276045524286019
VQPSAEDPNL	10	Unmodified	_VQPSAEDPNL_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.261653	1068.50875	-0.9333	-0.00049956	-0.74601	-0.00039931	-1.6793	-0.00089887	535.2611738682011	24.191	0.7018	24.191	23.951	24.653	0	0.014558	0.00050912	NaN	62.107	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598770	+		87053	28443	60591	60691							-0.02276045524286019
VQPSAEDPNL	10	Unmodified	_VQPSAEDPNL_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.261653	1068.50875	-1.4287	-0.00076472	-0.28964	-0.00015503	-1.7183	-0.00091976	535.2613733362183	24.208	0.61968	24.161	23.913	24.533	-0.047148	-0.014711	0.00099767	NaN	62.107	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579570	+		87054	28443	60591	60691							-0.02276045524286019
VQPSAEDPNL	10	Unmodified	_VQPSAEDPNL_					0	0	0			REV__ENSG00000198646|ENST00000359003|NCOA6	REV__ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	535.261653	1068.50875	1.5513	0.00083037	-2.8189	-0.0015089	-1.2676	-0.00067851	535.2600229782975	24.321	0.5249	24.141	23.893	24.418	-0.18089	-0.035378	-0.00171	NaN	62.107	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302060	+		87055	28443	60591	60691							-0.02276045524286019
VQPSKGLPK	9	Unmodified	_VQPSKGLPK_					0	0	0			REV__nc|ENSG00000070814|Q13428-2|TCOF1	REV__nc|ENSG00000070814|Q13428-2|TCOF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.77752685546875	2	477.292559	952.570566	0.13185	6.2933E-05	0.0072984	3.4835E-06	0.13915	6.6416E-05	477.2923648081956	27.877	0.42099	27.877	27.616	28.037	0					17	10	2	0	0	0	0.024367	1	1535	1535		36.447	10.997	1	136820	+		87056	20438	60592	60692	96664	96664					0.09238350685529895
VQPTSGEPRQ	10	Unmodified	_VQPTSGEPRQ_					0	0	0		ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.77880859375	2	549.780544	1097.54654	-0.54978	-0.00030226	-2.8007	-0.0015398	-3.3505	-0.001842	549.7792660673218	102.17	0.88358	102.18	101.86	102.74	0.0073471					59	20	4	0	0	0	1.0719	1	13073	13073		36.447	0.82846	1	844260			87057	8217	60593	60693	96665	96665					0.0016646546118863625
VQPWLNLVL	9	Unmodified	_VQPWLNLVL_					0	0	0			REV__ENST00000306026.5_1_3:49155182-49156625:-|nuORF	REV__ENST00000306026.5_1_3:49155182-49156625:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	541.322265625	2	541.32386	1080.63317	-1.8614	-0.0010076	-2.9079	-0.0015741	-4.7693	-0.0025818	541.3222634997059	59.951	1.9031	60.03	59.419	61.322	0.078888					140	50	4	0	0	0	0.70186	1	6824	6824		45.952	3.0877	1	24287000	+		87058	30120	60594	60694	96666	96666					0.09607496753687883
VQPWQPAE	8	Unmodified	_VQPWQPAE_					0	0	0			REV__ENST00000445681.1_1_7:65958813-65958960:+|nuORF	REV__ENST00000445681.1_1_7:65958813-65958960:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77752685546875	2	477.737617	953.460681	-0.080759	-3.8582E-05	-2.864	-0.0013682	-2.9447	-0.0014068	477.7362161189291	27.027	1.1571	27.014	26.415	27.572	-0.012983					49	29	3	0	0	0	0.027866	1	1501	1501		68.787	29.981	1	714200	+		87059	32619	60595	60695	96667	96667					-0.017910746536699662
VQPYFASSATR	11	Unmodified	_VQPYFASSATR_					0	0	0			REV__nc|ENSG00000100150|O75140-5|DEPDC5;REV__nc|ENSG00000100150|O75140-6|DEPDC5	REV__nc|ENSG00000100150|O75140-6|DEPDC5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	409.5426940917969	3	409.543655	1225.60914	-0.13917	-5.6996E-05	-3.0458	-0.0012474	-3.185	-0.0013044	409.5426552189627	22.184	1.173	21.999	21.473	22.646	-0.18539					71	24	6	0	0	0	0.99648	1	759	759		37.6	5.9656	1	2930000	+		87060	21055;36515	60596	60696	96668	96668					0.005356115293579933
VQQADDWKEK	10	Unmodified	_VQQADDWKEK_					0	0	0			REV__nc|ENSG00000121753|O60241-4|ADGRB2	REV__nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315673828125	3	416.206932	1245.59897	0.075951	3.1612E-05	-1.8827	-0.00078358	-1.8067	-0.00075197	416.2064352489269	21.071	0.14444	20.894	20.822	20.967	-0.17721					4	2	2	0	0	0	0.03519	1	623	623		32.751	4.1738	1	16236	+		87061	22606	60597	60697	96669	96669					-0.014009961958663553
VQQAIKNL	8	Unmodified	_VQQAIKNL_					0	0	0		XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant;nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.T2044Nfs*4|1|0.12|ENSG00000163092|chr2:167248048-167248048|C/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	XIRP2|p.V2833*|1|0.05|ENSG00000163092|chr2:167250414-167250414|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.781005859375	2	457.276909	912.539266	-0.85101	-0.00038915	1.2803	0.00058547	0.42933	0.00019632	457.27702646813117	49.522	0.91466	49.597	49.133	50.047	0.074196					56	24	4	0	0	0	0.027866	1	4991	4991		24.203	5.8783	1	1884400			87062	7034	60598	60698	96670	96670					0.07949777651424483
VQQAITTREK	10	Unmodified	_VQQAITTREK_					0	0	0			REV__nc|ENSG00000073969|P46459-2|NSF	REV__nc|ENSG00000073969|P46459-2|NSF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	586.7208862304688	2	587.332944	1172.65134	-0.87846	-0.00051595	3.0682	0.0018021	2.1898	0.0012861	587.3341380320104	33.212	0.20065	33.011	32.855	33.056	-0.20019					6	4	2	0	0	0	0.03519	1	2350	2350		41.427	4.9799	1	53656	+		87063	20516	60599	60699	96671	96671					0.07191586937733518
VQQALEKLN	9	Unmodified	_VQQALEKLN_					0	0	0			REV__ENSG00000166164|ENST00000394688|BRD7;REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	REV__ENST00000466133.1_1_3:159820071-159820575:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.3240356445312	2	521.798206	1041.58186	-0.1467	-7.6546E-05	-0.70465	-0.00036769	-0.85135	-0.00044423	522.2991089097482	58.127	0.98623	58.218	57.759	58.745	0.091217					45	26	2	0	0	0	0.024495	1	6545	6545		34.173	7.4796	1	293090	+		87064	25982;33022	60600	60700	96672	96672					0.06273127989015848
VQQAPDRLR	9	Unmodified	_VQQAPDRLR_					0	0	0			REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	REV__NCAPD2|p.A1274Pfs*8|1|0.19|ENSG00000010292|chr12:6529938-6529938|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	541.8075561523438	2	541.806897	1081.59924	-1.7114	-0.00092722	3.6588	0.0019823	1.9474	0.0010551	541.8085964491825	29.218	1.4056	29.218	28.53	29.936	0					97	34	5	0	0	0	0.62163	1	1797	1797		51.335	1.8939	1	2363200	+		87065	19902	60601	60701	96673	96673					0.06170468314644495
VQQAQQAEA	9	Unmodified	_VQQAQQAEA_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.2919006347656	2	486.740888	971.467223	0.32073	0.00015611	0.47632	0.00023184	0.79705	0.00038796	486.7424364100958	81.9	0.16886	81.671	81.608	81.777	-0.2289					5	3	2	0	0	0	0.024487	1	9853	9853		31.955	0	1	42341	+		87066	19855	60602	60702	96674	96674					-0.01965181492960255
VQQAREMVL	9	Unmodified	_VQQAREMVL_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;nc|ENSG00000107164|Q96I24-2|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.3053588867188	2	537.292233	1072.56991	-0.7112	-0.00038212	-1.0868	-0.00058393	-1.798	-0.00096605	537.2909421843697	68.801	0.48632	68.816	68.722	69.209	0.015129					21	12	3	0	0	0	0.02435	1	8204	8204		26.693	6.6961	1	363740			87067	2828	60603	60703	96675	96675					0.03653187974168759
VQQEAKKKE	9	Unmodified	_VQQEAKKKE_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.3087158203125	2	544.308938	1086.60332	-0.1491	-8.1156E-05	0.40576	0.00022086	0.25666	0.0001397	544.3091030052791	104.99	0.71271	104.82	104.47	105.18	-0.16484					71	25	4	0	0	0	0.89441	1	13064	13064		32.812	0	1	741820			87068	4735	60604	60704	96676	96676					0.06348513017701407
VQQHIANI	8	Unmodified	_VQQHIANI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1;ENST00000482856.1_1_1:223116165-223116675:+|nuORF	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	462.2512512207031	2	461.758884	921.503215	-0.39311	-0.00018152	0.47252	0.00021819	0.079406	3.6666E-05	461.75893630244695	30.17	0.50949	29.926	29.696	30.205	-0.24415					17	11	2	0	0	0	0.027866	1	1942	1942		60.294	7.9948	1	173960			87069	6401	60605	60705	96677	96677					0.03932320474552853
VQQHIANI	8	Unmodified	_VQQHIANI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1;ENST00000482856.1_1_1:223116165-223116675:+|nuORF	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	462.2510681152344	2	461.758884	921.503215	-0.092091	-4.2524E-05	0.12213	5.6394E-05	0.030038	1.387E-05	461.75876198148814	30.089	0.59181	29.939	29.668	30.259	-0.14952					24	13	3	0	0	0	0.027866	1	1907	1907		47.916	15.961	1	301670			87070	6401	60605	60705	96678	96678					0.03932320474552853
VQQHIANI	8	Unmodified	_VQQHIANI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1;ENST00000482856.1_1_1:223116165-223116675:+|nuORF	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	461.758884	921.503215	-1.1655	-0.00053819	2.2184	0.0010244	1.0529	0.0004862	461.75929378373814	30.179	0.44858	30.179	29.936	30.384	0	0.20469	0.0014442	NaN	45.952	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155240			87071	6401	60605	60705							0.03932320474552853
VQQHIANI	8	Unmodified	_VQQHIANI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1;ENST00000482856.1_1_1:223116165-223116675:+|nuORF	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	461.758884	921.503215	-0.49863	-0.00023025	1.8204	0.00084061	1.3218	0.00061036	461.7590456086394	30.067	0.4084	30.076	29.88	30.289	0.0086708	0.10158	0.0010766	NaN	45.952	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131780			87072	6401	60605	60705							0.03932320474552853
VQQHIANI	8	Unmodified	_VQQHIANI_					0	0	0		ENSG00000154309|ENST00000675850|DISP1;ENST00000482856.1_1_1:223116165-223116675:+|nuORF	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	461.758884	921.503215	-0.46979	-0.00021693	0.9975	0.00046061	0.52771	0.00024368	461.75896831273525	29.767	0.68185	29.845	29.41	30.091	0.078346	-0.12937	0.00031661	NaN	45.952	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213980			87073	6401	60605	60705							0.03932320474552853
VQQIQNRL	8	Unmodified	_VQQIQNRL_					0	0	0			REV__nc|ENSG00000099308|O60307|MAST3	REV__nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2079162597656	2	499.790715	997.566878	-0.096653	-4.8306E-05	0.71605	0.00035788	0.6194	0.00030957	499.79047051265195	42.583	0.7651	42.46	42.116	42.881	-0.12299					29	19	2	0	0	0	0.027866	1	3896	3896		11.511	4.7755	1	1343300	+		87074	21000	60606	60706	96679	96679					0.06799680911649375
VQQLHGFG	8	Unmodified	_VQQLHGFG_					0	0	0		ENST00000427063.6_1_10:29710449-29710551:+|nuORF	ENST00000427063.6_1_10:29710449-29710551:+|nuORF	ENST00000427063.6_1_10:29710449-29710551:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	443.29217529296875	2	443.232502	884.450451	-0.19865	-8.8049E-05	3.7672	0.0016697	3.5685	0.0015817	443.2341868824602	36.69	0.4661	36.728	36.613	37.08	0.038044					17	11	2	0	0	0	0.027866	1	2902	2902		35.201	3.2459	1	57050			87075	14101	60607	60707	96680	96680					0.00360362411765891
VQQPLLPPD	9	Unmodified	_VQQPLLPPD_					0	0	0			REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.78167724609375	2	503.782025	1005.5495	0.92018	0.00046357	-0.21616	-0.0001089	0.70403	0.00035468	503.78179354657516	87.6	0.8495	87.618	87.303	88.153	0.018585					52	20	4	0	0	0	0.33245	1	10958	10958		71.296	7.0884	1	1394200	+		87076	33010	60608	60708	96681	96681					0.04694340585979262
VQQPLLPPD	9	Unmodified	_VQQPLLPPD_					0	0	0			REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	503.782025	1005.5495	-0.13412	-6.757E-05	0.62749	0.00031612	0.49336	0.00024855	503.78216873952266	87.643	0.57916	87.464	87.154	87.733	-0.17875	-0.075604	0.00041416	NaN	71.296	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372350	+		87077	33010	60608	60708							0.04694340585979262
VQQPLLPPD	9	Unmodified	_VQQPLLPPD_					0	0	0			REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	503.782025	1005.5495	0.31757	0.00015999	-0.038937	-1.9616E-05	0.27864	0.00014037	503.78188560722936	87.602	0.53928	87.465	87.22	87.76	-0.13613	-0.074476	-0.0002573	NaN	71.296	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333840	+		87078	33010	60608	60708							0.04694340585979262
VQQPLLPPD	9	Unmodified	_VQQPLLPPD_					0	0	0			REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	503.782025	1005.5495	-0.21868	-0.00011016	0.03903	1.9663E-05	-0.17965	-9.0502E-05	503.7821141652578	87.611	0.53687	87.474	87.248	87.784	-0.13734	-0.066384	-0.00017875	NaN	71.296	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278210	+		87079	33010	60608	60708							0.04694340585979262
VQQQALAL	8	Unmodified	_VQQQALAL_					0	0	0		ENSG00000136935|ENST00000373555|GOLGA1;ENST00000475407.5_2_9:127642811-127683993:-|nuORF	ENSG00000136935|ENST00000373555|GOLGA1	ENSG00000136935|ENST00000373555|GOLGA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.7404479980469	2	435.75581	869.497067	-0.42314	-0.00018439	1.3963	0.00060845	0.97316	0.00042406	435.75618601140343	45.279	0.3745	45.13	44.938	45.312	-0.1488					16	10	2	0	0	0	0.027866	1	4361	4361		13.775	0	1	133650			87080	5070	60609	60709	96682	96682					0.057098022430295714
VQQQAYMY	8	Unmodified	_VQQQAYMY_					0	0	0		ENST00000269499.9_2_18:60244002-60244146:+|nuORF	ENST00000269499.9_2_18:60244002-60244146:+|nuORF	ENST00000269499.9_2_18:60244002-60244146:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7979125976562	2	515.73676	1029.45897	-0.80818	-0.00041681	-2.9387	-0.0015156	-3.7469	-0.0019324	515.7351739846998	26.298	0.74993	26.38	26.21	26.96	0.081291					21	17	2	0	0	0	0.027866	1	1315	1315		42.474	11.971	1	57963			87081	11637	60610	60710	96683	96683					-0.05458451733943548
VQQQGSAEEV	10	Unmodified	_VQQQGSAEEV_					0	0	0			REV__ITGB6-RBMS1|6|fusion	REV__ITGB6-RBMS1|6|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.7724609375	2	537.756735	1073.49892	-0.11761	-6.3245E-05	-2.5694	-0.0013817	-2.687	-0.001445	537.7546796983426	58.997	0.19252	58.756	58.622	58.814	-0.24165					6	4	2	0	0	0	0.03519	1	6475	6475		36.447	7.2972	1	46332	+		87082	24896	60611	60711	96684	96684					-0.03489233529671765
VQQQIHIQ	8	Unmodified	_VQQQIHIQ_					0	0	0			REV__ENST00000479399.5_1_9:34614691-34614781:-|nuORF	REV__ENST00000479399.5_1_9:34614691-34614781:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.27392578125	2	497.277441	992.540328	-0.49408	-0.0002457	-0.15383	-7.6496E-05	-0.64791	-0.00032219	497.2772643278101	40.072	0.59743	39.96	39.715	40.312	-0.11222					42	15	4	0	0	0	0.97924	1	3478	3478		40.573	0	1	2939800	+		87083	33397	60612	60712	96685	96685					0.04375992020322883
VQQQLIRET	9	Unmodified	_VQQQLIRET_					0	0	0		ENSG00000184575|ENST00000332707|XPOT;XPOT|p.S473Qfs*9|1|0.4|ENSG00000184575|chr12:64425145-64425145|T/-|frameshift_variant	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.8322143554688	2	557.814387	1113.61422	0.26196	0.00014613	-0.35576	-0.00019845	-0.093796	-5.2321E-05	557.813766883107	22.384	0.22584	22.195	22.102	22.327	-0.18894					7	4	2	0	0	0	0.024457	1	786	786		21.96	1.013	1	23041			87084	9353	60613	60713	96686	96686					0.061959153919815435
VQQYIQQNI	9	Unmodified	_VQQYIQQNI_					0	0	0		nc|ENSG00000115540|Q9Y3A3-2|MOB4;ENSG00000115540|ENST00000323303|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	566.8270263671875	2	567.301113	1132.58767	-0.70317	-0.00039891	0.29246	0.00016592	-0.41071	-0.000233	567.3010644085135	53.322	0.64233	53.322	53.049	53.691	0					38	17	3	0	0	0	0.024294	1	5729	5729		55.504	6.0627	1	1016700			87085	3462	60614	60714	96687	96687					0.026682265006456873
VQRDADIGV	9	Unmodified	_VQRDADIGV_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7592468261719	2	486.759081	971.503609	0.20794	0.00010122	-0.34298	-0.00016695	-0.13504	-6.5733E-05	486.758913780688	37.396	0.98228	37.396	37.12	38.102	0					59	27	3	0	0	0	0.14181	2	3047	3047;3059		101.25	26.998	1	15915000			87086	4623	60615	60715	96688;96689	96688					0.016716954037633514
VQRDADIGV	9	Unmodified	_VQRDADIGV_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.7593994140625	2	486.759081	971.503609	-0.10507	-5.1143E-05	-0.12122	-5.9007E-05	-0.22629	-0.00011015	486.7590262010669	37.299	1.0333	37.236	36.904	37.937	-0.063385					50	28	3	0	0	0	0.247	1	3007	3007		82.75	13.964	1	14103000			87087	4623	60615	60715	96690	96690					0.016716954037633514
VQRDADIGV	9	Unmodified	_VQRDADIGV_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.75927734375	2	486.759081	971.503609	-0.42773	-0.0002082	0.15828	7.7045E-05	-0.26945	-0.00013116	486.7591111495507	37.395	1.1613	37.427	37.074	38.235	0.032269					69	31	4	0	0	0	0.6238	1	2999	2999		51.193	3.5354	1	13073000			87088	4623	60615	60715	96691	96691					0.016716954037633514
VQREIADL	8	Unmodified	_VQREIADL_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1;ENST00000569825.1_1_16:70287541-70292096:-|nuORF	ENSG00000090861|ENST00000261772|AARS1;ENST00000569825.1_1_16:70287541-70292096:-|nuORF	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.2633056640625	2	472.263999	942.513445	-0.33861	-0.00015991	-0.28558	-0.00013487	-0.62419	-0.00029478	472.2638682529035	62.95	1.3012	62.71	62.37	63.671	-0.23926					118	34	5	0	0	0	0.96769	1	7290	7290		42.396	0	1	18045000			87089	1941;17011	60616	60716	96692	96692					0.03988883409135724
VQREPDECDEE	11	Unmodified	_VQREPDECDEE_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2872009277344	3	450.182234	1347.52487	0.34819	0.00015675	-1.8604	-0.00083752	-1.5122	-0.00068077	450.18135509466737	37.407	0.50256	37.214	36.966	37.469	-0.193					20	12	2	0	0	0	0.024816	1	2970	2970		21.78	7.0868	1	91018	+		87090	22483	60617	60717	96693	96693					-0.1349875214034455
VQRESLNL	8	Unmodified	_VQRESLNL_					0	0	0			REV__ENSG00000170689|ENST00000311177|HOXB9	REV__ENSG00000170689|ENST00000311177|HOXB9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.7693786621094	2	479.769448	957.524344	-0.98834	-0.00047418	1.3383	0.00064208	0.34997	0.00016791	479.7696673021737	51.542	1.1575	51.629	51.077	52.235	0.087006					80	31	3	0	0	0	0.38451	1	5420	5420		99.375	0	1	4032900	+		87091	26497	60618	60718	96694	96694					0.04388285783431911
VQRGDIVKV	9	Unmodified	_VQRGDIVKV_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.30828857421875	2	507.308741	1012.60293	-0.21489	-0.00010901	0.73295	0.00037183	0.51807	0.00026282	507.30846402884237	41.374	0.8393	41.238	40.752	41.591	-0.13553					52	21	3	0	0	0	0.45795	1	3656	3656		62.107	1.9892	1	1347200			87092	3961	60619	60719	96695	96695					0.09713138088511641
VQRGDIVKV	9	Unmodified	_VQRGDIVKV_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	507.308741	1012.60293	-0.056414	-2.8619E-05	0.079719	4.0442E-05	0.023305	1.1823E-05	507.30878030686455	41.275	1.0099	41.275	40.944	41.954	0	-0.074568	0.00012766	NaN	62.107	67	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7080500			87093	3961	60619	60719							0.09713138088511641
VQRGDIVKV	9	Unmodified	_VQRGDIVKV_					0	0	0		nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-2|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	nc|ENSG00000123191|P35670-3|ATP7B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	507.308741	1012.60293	-0.53288	-0.00027033	0.48991	0.00024854	-0.042967	-2.1797E-05	507.3085679601738	41.631	0.76382	41.401	40.925	41.688	-0.2303	0.051479	0.00054385	NaN	62.107	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1306100			87094	3961	60619	60719							0.09713138088511641
VQRHKRDL	8	Unmodified	_VQRHKRDL_					0	0	0			REV__ENST00000513442.1_1_5:180338577-180375566:+|nuORF	REV__ENST00000513442.1_1_5:180338577-180375566:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	527.2467651367188	2	526.309606	1050.60466	-0.89688	-0.00047204	-2.2062	-0.0011611	-3.1031	-0.0016332	527.3102422212556	38.24	0.19896	38.061	37.971	38.17	-0.17929					11	5	3	0	0	0	0.027866	1	3128	3128		23.042	2.5607	1	105770	+		87095	34156	60620	60720	96696	96696					0.08138191897114666
VQRITKNI	8	Unmodified	_VQRITKNI_					0	0	0		ENSG00000115998|ENST00000264434|C2orf42	ENSG00000115998|ENST00000264434|C2orf42	ENSG00000115998|ENST00000264434|C2orf42	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.3037414550781	2	486.303458	970.592364	0.29385	0.0001429	-0.99079	-0.00048183	-0.69695	-0.00033893	486.3029765935442	47.556	1.5497	47.369	46.966	48.516	-0.18684					93	41	5	0	0	0	0.845	1	4630	4630		55.504	0	1	15120000			87096	3508	60621	60721	96697	96697					0.10589155434081476
VQRLEPVI	8	Unmodified	_VQRLEPVI_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000123836|O60825-2|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000158571|P16118-2|PFKFB1;nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	477.2925720214844	2	477.292559	952.570566	1.0469	0.00049967	-1.2575	-0.0006002	-0.21064	-0.00010054	477.2918016788199	51.378	0.88774	51.378	50.882	51.77	0					47	24	3	0	0	0	0.93437	1	5439	5439		47.657	3.5405	1	2997200			87097	3351;4000;8050;6686	60622	60722	96698	96698					0.09238350685518526
VQRLEPVI	8	Unmodified	_VQRLEPVI_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000123836|O60825-2|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000158571|P16118-2|PFKFB1;nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.29290771484375	2	477.292559	952.570566	-0.21527	-0.00010275	-0.20941	-9.995E-05	-0.42468	-0.0002027	477.29233246318427	51.536	0.73089	51.389	51.046	51.777	-0.14735					50	20	3	0	0	0	0.91956	1	5440	5440		49.442	4.9105	1	3281600			87098	3351;4000;8050;6686	60622	60722	96699	96699					0.09238350685518526
VQRLEPVI	8	Unmodified	_VQRLEPVI_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000123836|O60825-2|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000123836|ENST00000367080|PFKFB2;nc|ENSG00000158571|P16118-2|PFKFB1;nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.2928771972656	2	477.292559	952.570566	-0.80645	-0.00038491	0.32688	0.00015602	-0.47957	-0.0002289	477.2925556080118	51.27	0.71369	51.357	51.001	51.715	0.087006					50	19	3	0	0	0	0.96769	1	5354	5354		42.396	1.618	1	2865800			87099	3351;4000;8050;6686	60622	60722	96700	96700					0.09238350685518526
VQRLGELV	8	Unmodified	_VQRLGELV_					0	0	0			REV__ENSG00000186193|ENST00000409687|SAPCD2	REV__ENSG00000186193|ENST00000409687|SAPCD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.28936767578125	2	457.276909	912.539266	-0.99943	-0.00045702	-1.3144	-0.00060105	-2.3138	-0.0010581	457.27569239925424	93.714	0.30408	93.574	93.353	93.657	-0.13995					9	6	2	0	0	0	0.027866	1	11515	11515		38.806	1.647	1	40581	+		87100	27835	60623	60723	96701	96701					0.07949777651435852
VQRLNQGR	8	Unmodified	_VQRLNQGR_					0	0	0			REV__ENST00000328969.5_1_20:62340221-62340320:+|nuORF	REV__ENST00000328969.5_1_20:62340221-62340320:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3080749511719	2	485.780682	969.546811	-0.68595	-0.00033322	3.5444	0.0017218	2.8584	0.0013886	485.7822320602565	65.274	0.43936	65.274	65.02	65.46	0					17	12	2	0	0	0	0.027866	1	7740	7740		24.203	0	1	249130	+		87101	30441	60624	60724	96702	96702					0.060819299717081776
VQRLPVGAAF	10	Unmodified	_VQRLPVGAAF_					0	0	0		ENST00000481564.1_1_7:23338971-23340720:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1	ENST00000481564.1_1_7:23338971-23340720:+|nuORF	ENST00000481564.1_1_7:23338971-23340720:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.3092651367188	2	529.311284	1056.60801	-1.8693	-0.00098946	-0.66464	-0.0003518	-2.534	-0.0013413	529.3109158842053	29.274	0.82237	29.274	29.032	29.855	0					52	20	4	0	0	0	1.0781	1	1803	1803		35.618	2.8059	1	3003400			87102	6559	60625	60725	96703	96703					0.081974419511198
VQRLRSAKELL	11	Unmodified	_VQRLRSAKELL_					0	0	0		ENST00000591316.1_1_1:16804748-16809819:-|nuORF;nc|ENSG00000290842|Q8IVE0|CROCCP3;ENST00000591348.5_1_1:16802327-16812083:-|nuORF	ENST00000591316.1_1_1:16804748-16809819:-|nuORF	ENST00000591316.1_1_1:16804748-16809819:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	438.27288818359375	3	438.273499	1311.79867	-0.053208	-2.332E-05	-0.53946	-0.00023643	-0.59267	-0.00025975	438.2732444854445	105.5	1.0452	105.38	104.85	105.9	-0.12444					64	30	4	0	0	0	1.044	1	13128	13128		26.75	7.487	1	717220			87103	17351	60626	60726	96704	96704					0.1552410354256608
VQRPFAPVAP	10	Unmodified	_VQRPFAPVAP_					0	0	0			REV__ENST00000477917.5_1_2:220146297-220148118:+|nuORF	REV__ENST00000477917.5_1_2:220146297-220148118:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.7635498046875	2	541.311284	1080.60801	-2.0488	-0.0011091	1.1739	0.00063546	-0.87491	-0.0004736	541.3118455491202	49.466	0.4889	49.54	49.279	49.768	0.074192					18	12	2	0	0	0	0.03519	1	5075	5075		27.882	4.8398	1	144220	+		87104	33346	60627	60727	96705	96705					0.07093441951110435
VQRPIPLT	8	Unmodified	_VQRPIPLT_					0	0	0		ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2	ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	462.7976989746094	2	462.287277	922.560001	0.69448	0.00032105	-0.63292	-0.00029259	0.061563	2.846E-05	462.28683391433816	58.957	0.7272	58.957	58.418	59.145	0					40	19	4	0	0	0	0.027866	1	6662	6662		24.203	5.8783	1	567520			87105	3565;18195	60628	60728	96706	96706					0.09562368031083679
VQRPLHEF	8	Unmodified	_VQRPLHEF_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000432615.5_1_7:158424360-158447416:-|nuORF;ENST00000467785.5_1_7:158424360-158447992:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3106689453125	2	513.279983	1024.54541	-0.79601	-0.00040857	2.4744	0.0012701	1.6784	0.0008615	513.2812453507546	64.98	0.29807	65.018	64.854	65.152	0.037384					10	7	2	0	0	0	0.027866	1	7567	7567		63.306	15.391	1	144490			87106	5920	60629	60729	96707	96707					0.03412295882935723
VQRQHMLW	8	Unmodified	_VQRQHMLW_					0	0	0		ENST00000569787.1_1_16:22328322-22336592:+|nuORF;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E	ENST00000569787.1_1_16:22328322-22336592:+|nuORF	ENST00000569787.1_1_16:22328322-22336592:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	549.2413330078125	2	549.287285	1096.56002	-0.039807	-2.1866E-05	-4.2267	-0.0023217	-4.2665	-0.0023435	549.2848066632599	50.131	0.67398	49.851	49.584	50.258	-0.27977					41	17	4	0	0	0	0.027866	1	5041	5041		28.254	0	1	1826300			87107	1215	60630	60730	96708	96708					0.015600447594351863
VQRQQQTP	8	Unmodified	_VQRQQQTP_					0	0	0			REV__ENST00000527638.1_1_11:1312411-1330818:-|nuORF	REV__ENST00000527638.1_1_11:1312411-1330818:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7662048339844	2	492.764697	983.514842	0.56309	0.00027747	3.3983	0.0016746	3.9614	0.001952	492.76638240520754	77.907	2.5764	77.696	77.08	79.656	-0.21087					157	61	4	0	0	0	0.74904	1	9569	9569		63.306	7.8021	1	4408300	+		87108	20624	60631	60731	96709	96709					0.022425174978934592
VQRRADCC	8	Unmodified	_VQRRADCC_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.3221130371094	2	475.718378	949.422204	-0.43064	-0.00020487	3.1565	0.0015016	2.7258	0.0012967	475.7198590760287	66.505	0.42026	66.259	65.931	66.351	-0.24517					16	10	2	0	0	0	0.027866	1	7619	7619		30.504	13.139	1	134420	+		87109	21692	60632	60732	96710	96710					-0.054530268315033936
VQRRHLPL	8	Unmodified	_VQRRHLPL_					0	0	0			REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.789306640625	2	509.817067	1017.61958	-0.24504	-0.00012493	-1.5189	-0.00077438	-1.764	-0.0008993	509.8176204882729	85.918	0.50672	85.869	85.653	86.16	-0.048149					14	11	2	0	0	0	0.027866	1	10743	10743		35.201	3.2459	1	64920	+		87110	32575	60633	60733	96711	96711					0.11147683765113925
VQRRHLPL	8	Unmodified	_VQRRHLPL_					0	0	0			REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	REV__ENST00000443119.7_3_16:70405905-70406055:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	510.7892761230469	2	509.817067	1017.61958	0.30253	0.00015423	1.8347	0.00093536	2.1372	0.0010896	509.8181225834873	85.61	0.16737	85.472	85.326	85.493	-0.13753					6	3	2	0	0	0	0.027866	1	10362	10362		35.201	7.3185	1	24972	+		87111	32575	60633	60733	96712	96712					0.11147683765113925
VQRRKRAP	8	Unmodified	_VQRRKRAP_					0	0	0			REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.2728576660156	2	505.820141	1009.62573	0.56812	0.00028737	2.4314	0.0012299	2.9995	0.0015172	505.8211663182247	70.6	0.47095	70.6	70.397	70.868	0					19	10	3	0	0	0	0.027866	1	8543	8543		12.959	0	1	207040	+		87112	20493	60634	60734	96713	96713					0.1213020199663788
VQRTNLGI	8	Unmodified	_VQRTNLGI_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;ENST00000495925.5_1_2:172291168-172300041:+|nuORF	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.7673645019531	2	450.766709	899.518865	-0.50458	-0.00022745	-0.052206	-2.3533E-05	-0.55678	-0.00025098	450.7666834549954	35.226	0.84675	35.039	34.641	35.488	-0.18675					66	21	5	0	0	0	0.47665	1	2655	2655		87.754	2.8388	1	7562200			87113	3493	60635	60735	96714	96714					0.06508606991610577
VQRVPRDP	8	Unmodified	_VQRVPRDP_					0	0	0		nc|ENSG00000169347|P55259-2|GP2	nc|ENSG00000169347|P55259-2|GP2	nc|ENSG00000169347|P55259-2|GP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.7900390625	2	483.777608	965.540663	-0.41586	-0.00020118	-2.1947	-0.0010618	-2.6106	-0.0012629	483.7761820397527	46.151	1.1595	46.202	45.864	47.024	0.051395					64	32	3	0	0	0	0.027866	1	4452	4452		57.811	0	1	721230			87114	18500	60636	60736	96715	96715					0.056514117401775366
VQSAKLEHLR	10	Unmodified	_VQSAKLEHLR_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	590.2741088867188	2	590.843479	1179.67241	-1.1472	-0.00067781	-4.3806	-0.0025882	-5.5277	-0.003266	590.8405563768353	89.648	0.30247	89.521	89.327	89.63	-0.12774					13	6	3	0	0	0	0.03519	1	10950	10950		51.193	16.041	1	70124			87115	7225	60637	60737	96716	96716					0.08975597037260741
VQSALSMCTE	10	Unmodified	_VQSALSMCTE_					0	0	0			REV__nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	REV__nc|ENSG00000064692|Q9Y6H5-4|SNCAIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.280517578125	2	534.738642	1067.46273	-0.43824	-0.00023434	0.33496	0.00017912	-0.10328	-5.5227E-05	534.7385739715736	54.66	0.55587	54.429	54.118	54.674	-0.23087					28	15	3	0	0	0	0.03519	1	5767	5767		23.523	1.8204	1	406700	+		87116	20292	60638	60738	96717	96717					-0.06830150022369708
VQSASPDIR	9	Unmodified	_VQSASPDIR_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7591247558594	2	486.759081	971.503609	-0.42773	-0.0002082	0.15828	7.7045E-05	-0.26945	-0.00013116	486.7591111495507	37.395	1.1613	37.427	37.074	38.235	0.032269					69	31	4	0	0	0	0.33603	1	2986	2986		70.816	5.3508	1	13073000			87117	10062	60639	60739	96718	96718					0.016716954037519827
VQSDPQRA	8	Unmodified	_VQSDPQRA_					0	0	0		ENSG00000107036|ENST00000414202|RIC1;nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1	ENSG00000107036|ENST00000414202|RIC1	ENSG00000107036|ENST00000414202|RIC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.26666259765625	2	450.730323	899.446094	0.68422	0.0003084	-0.63959	-0.00028828	0.044633	2.0117E-05	450.7281881990871	54.241	0.97521	54.339	53.973	54.949	0.098015					35	27	2	0	0	0	0.027866	1	5801	5801		24.203	6.8378	1	108710			87118	2823	60640	60740	96719	96719					-0.007651468018138985
VQSEEKLVI	9	Unmodified	_VQSEEKLVI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	OPSCC_39_ClassI_Rep-1	1	522.8002319335938	2	522.800414	1043.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.483	1	48.483	47.983	48.983	0								0	0	0	0.042231	1	4947	4947		112.41	11.158	1				87119	4534	60641	60741	96720	96720					0.06622592411895312
VQSEEKLVI	9	Unmodified	_VQSEEKLVI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	OPSCC_39_ClassI_Rep-1	1	522.8002319335938	2	522.800414	1043.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.542	1	48.542	48.042	49.042	0								0	0	0	0.024584	1	4957	4957		124.08	11.669	1				87120	4534	60641	60741	96721	96721					0.06622592411895312
VQSEEKLVI	9	Unmodified	_VQSEEKLVI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	OPSCC_39_ClassI_Rep-1	1	522.8004760742188	2	522.800414	1043.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.609	1	48.609	48.109	49.109	0								0	0	0	0.02992	1	4969	4969		117.81	11.128	1				87121	4534	60641	60741	96722	96722					0.06622592411895312
VQSEEKLVI	9	Unmodified	_VQSEEKLVI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MSMS	OPSCC_39_ClassI_Rep-1	1	522.8001098632812	2	522.800414	1043.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.68	1	48.68	48.18	49.18	0								0	0	0	0.02992	1	4981	4981		117.81	0	1				87122	4534	60641	60741	96723	96723					0.06622592411895312
VQSEEKLVI	9	Unmodified	_VQSEEKLVI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.8005981445312	2	522.800414	1043.58628	-0.63389	-0.0003314	-0.15193	-7.9429E-05	-0.78582	-0.00041082	522.8003062089408	48.746	1.7242	48.594	48.092	49.816	-0.15277					102	47	3	0	0	0	0.013924	5	4959	4947;4959;4970;4982;4996		167.23	23.857	1	15336000			87123	4534	60641	60741	96724;96725;96726;96727;96728	96725					0.06622592411895312
VQSEEKLVI	9	Unmodified	_VQSEEKLVI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	522.7999877929688	2	522.800414	1043.58628	-0.41625	-0.00021761	-0.46385	-0.0002425	-0.8801	-0.00046012	522.8001568495425	48.435	1.6033	48.502	48.043	49.647	0.066795					99	43	3	0	0	0	0.016542	5	4883	4859;4872;4883;4896;4914		154.12	23.857	1	17107000			87124	4534	60641	60741	96729;96730;96731;96732;96733	96731					0.06622592411895312
VQSFPQEKP	9	Unmodified	_VQSFPQEKP_					0	0	0			REV__FAM53C|p.S86F|1|0.39|ENSG00000120709|chr5:138344945-138344945|C/T|missense_variant	REV__FAM53C|p.S86F|1|0.39|ENSG00000120709|chr5:138344945-138344945|C/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3109741210938	2	530.277106	1058.53966	-0.91057	-0.00048286	0.49125	0.0002605	-0.41932	-0.00022236	530.2772589426934	56.904	1.0447	56.904	56.104	57.148	0					52	29	3	0	0	0	0.024257	1	6398	6398		67.494	12.717	1	1835400	+		87125	22554	60642	60742	96734	96734					0.012731525806202626
VQSGIVGPSL	10	Unmodified	_VQSGIVGPSL_					0	0	0		ENST00000376088.7_2_X:49840557-49845266:+|nuORF;CLCN5|p.G93Dfs*45|1|0.48|ENSG00000171365|chrX:50075863-50075863|G/-|frameshift_variant	ENST00000376088.7_2_X:49840557-49845266:+|nuORF	ENST00000376088.7_2_X:49840557-49845266:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.28955078125	2	478.7742	955.533846	-0.43511	-0.00020832	-1.0915	-0.00052257	-1.5266	-0.00073089	478.7742810321123	25.674	0.12629	25.64	25.556	25.682	-0.034395					4	2	2	0	0	0	0.03519	1	1216	1216		31.53	0	1	31182			87126	451	60643	60743	96735	96735					0.054300540689382615
VQSGSPATARD	11	Unmodified	_VQSGSPATARD_					0	0	0			REV__ENST00000380325.3_1_20:3028595-3028802:+|nuORF	REV__ENST00000380325.3_1_20:3028595-3028802:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.8132934570312	2	544.770177	1087.5258	-1.0635	-0.00057935	0.89214	0.00048601	-0.17134	-9.334E-05	544.7706388922049	93.035	1.3088	93.031	92.397	93.706	-0.0042038					43	30	2	0	0	0	0.024799	1	11831	11831		66.962	12.186	1	55923	+		87127	31473	60644	60744	96736	96736					-0.014461249184705594
VQSGSPATARD	11	Unmodified	_VQSGSPATARD_					0	0	0			REV__ENST00000380325.3_1_20:3028595-3028802:+|nuORF	REV__ENST00000380325.3_1_20:3028595-3028802:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.8132934570312	2	544.770177	1087.5258	0.041899	2.2826E-05	-0.49159	-0.00026781	-0.4497	-0.00024498	544.7700084880538	93.793	0.86772	93.671	93.191	94.058	-0.12215					28	19	2	0	0	0	0.024795	1	11505	11505		69.628	6.3214	1	41946	+		87128	31473	60644	60744	96737	96737					-0.014461249184705594
VQSHFRLAD	9	Unmodified	_VQSHFRLAD_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4;REV__nc|ENSG00000160460|Q9H254-3|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.7775268554688	2	536.780348	1071.54614	-0.86696	-0.00046537	-3.1601	-0.0016963	-4.027	-0.0021616	536.7785626997829	56.997	0.68235	57.092	56.783	57.465	0.095306					49	18	3	0	0	0	0.16638	1	6320	6320		95.815	5.4453	1	2631800	+		87129	25323;36836	60645	60745	96738	96738					0.01323090531991511
VQSIFLAPP	9	Unmodified	_VQSIFLAPP_					0	0	0		ENST00000429967.2_1_X:128781414-128781876:-|nuORF	ENST00000429967.2_1_X:128781414-128781876:-|nuORF	ENST00000429967.2_1_X:128781414-128781876:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.7480773925781	2	486.28166	970.548768	0.025917	1.2603E-05	1.5526	0.00075499	1.5785	0.00076759	486.28172287707923	70.026	0.74042	69.776	69.441	70.182	-0.25063					43	17	3	0	0	0	0.024292	1	8166	8166		49.442	13.823	1	386140			87130	14160	60646	60746	96739	96739					0.062315459369415294
VQSKEKTRTCS	11	Carbamidomethyl (C)	_VQSKEKTRTC(Carbamidomethyl (C))S_	VQSKEKTRTC(1)S		VQSKEKTRTC(45)S		0	1	0		ENST00000313080.8_1_17:74477595-74497465:-|nuORF;ENST00000589526.5_1_17:74477595-74489204:-|nuORF;ENST00000590288.1_3_17:74477595-74497093:-|nuORF	ENST00000313080.8_1_17:74477595-74497465:-|nuORF	ENST00000313080.8_1_17:74477595-74497465:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	441.89306640625	3	441.894359	1322.66125	-0.13423	-5.9317E-05	-2.2953	-0.0010143	-2.4295	-0.0010736	441.893298701237	34.968	0.62101	34.781	34.519	35.14	-0.18675					53	15	5	0	0	0	0.96481	1	2608	2608		44.639	7.0395	1	2227500			87131	12093	60647	60747	96740	96740	166				0.012824068808185984
VQSLARRA	8	Unmodified	_VQSLARRA_					0	0	0		ENSG00000255181|ENST00000542437|CCDC166	ENSG00000255181|ENST00000542437|CCDC166	ENSG00000255181|ENST00000542437|CCDC166	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.7843933105469	2	450.772326	899.530098	-0.31771	-0.00014321	-1.7612	-0.00079388	-2.0789	-0.0009371	450.7716324056015	28.649	0.80688	28.645	28.157	28.964	-0.0042019					24	18	3	0	0	0	0.027866	1	1675	1675		108.09	22.728	1	407640			87132	10889	60648	60748	96741	96741					0.07631429085745367
VQSLRAVK	8	Unmodified	_VQSLRAVK_					0	0	0			REV__ENST00000519876.1_1_8:144351566-144355345:+|nuORF	REV__ENST00000519876.1_1_8:144351566-144355345:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.78448486328125	2	450.784902	899.55525	-0.71854	-0.00032391	-0.50162	-0.00022612	-1.2202	-0.00055003	450.78482508917403	28.68	2.232	28.68	28.318	30.55	0					135	54	5	0	0	0	0.56311	1	1703	1703		79.713	0	1	30076000	+		87133	34274	60649	60749	96742	96742					0.10145483888322815
VQSLRAVK	8	Unmodified	_VQSLRAVK_					0	0	0			REV__ENST00000519876.1_1_8:144351566-144355345:+|nuORF	REV__ENST00000519876.1_1_8:144351566-144355345:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.7843933105469	2	450.784902	899.55525	-0.32184	-0.00014508	-0.96011	-0.0004328	-1.282	-0.00057788	450.7846003923993	28.685	2.4446	28.681	28.33	30.775	-0.0042019					131	59	5	0	0	0	0.30694	3	1675	1675;1687;1699		110.12	19.343	1	27927000	+		87134	34274	60649	60749	96743;96744;96745	96743					0.10145483888322815
VQSLRTAH	8	Unmodified	_VQSLRTAH_					0	0	0		ENST00000545827.6_1_16:1004588-1031225:-|nuORF	ENST00000545827.6_1_16:1004588-1031225:-|nuORF	ENST00000545827.6_1_16:1004588-1031225:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.2561340332031	2	456.256508	910.498464	0.8731	0.00039836	-0.055219	-2.5194E-05	0.81789	0.00037317	456.2566565233154	99.482	1.602	99.358	98.153	99.756	-0.12458					63	40	3	0	0	0	1.0239	1	12349	12349		33.516	0.70317	1	231240			87135	16498	60650	60750	96746	96746					0.03963436331787307
VQSLRTAH	8	Unmodified	_VQSLRTAH_					0	0	0		ENST00000545827.6_1_16:1004588-1031225:-|nuORF	ENST00000545827.6_1_16:1004588-1031225:-|nuORF	ENST00000545827.6_1_16:1004588-1031225:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	456.256508	910.498464	0.76738	0.00035012	-0.75079	-0.00034255	0.016587	7.5679E-06	456.2560845007778	99.458	0.69934	99.323	99.054	99.753	-0.13526	-0.035133	-0.00024375	NaN	33.516	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361850			87136	16498	60650	60750							0.03963436331787307
VQSLSFFHF	9	Unmodified	_VQSLSFFHF_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	556.8366088867188	2	556.282192	1110.54983	-0.024695	-1.3737E-05	-0.89772	-0.00049939	-0.92241	-0.00051312	556.2817393502598	18.045	0.5451	17.838	17.664	18.21	-0.20669					17	10	2	0	0	0	0.024541	1	240	240		31.53	4.7337	1	50356	+		87137	26902	60651	60751	96747	96747					-0.001022396941380066
VQSLSFFHF	9	Unmodified	_VQSLSFFHF_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	556.282192	1110.54983	0.8744	0.00048641	-1.6084	-0.00089474	-0.73404	-0.00040833	556.2811211863255	18.036	1.3346	17.879	17.555	18.889	-0.15637	0.020587	-0.00055484	NaN	47.657	32	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55311	+		87138	26902	60651	60751							-0.001022396941380066
VQSNKTKGD	9	Unmodified	_VQSNKTKGD_					0	0	0		PTPRJ|p.L275V|1|0.29|ENSG00000149177|chr11:48123819-48123819|C/G|missense_variant	PTPRJ|p.L275V|1|0.29|ENSG00000149177|chr11:48123819-48123819|C/G|missense_variant	PTPRJ|p.L275V|1|0.29|ENSG00000149177|chr11:48123819-48123819|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	487.79815673828125	2	488.756538	975.498523	0.00010699	5.2294E-08	4.2053	0.0020554	4.2054	0.0020554	488.757890848328	75.631	0.28289	75.641	75.504	75.787	0.010376					10	7	2	0	0	0	0.02435	1	9200	9200		42.396	0	1	145700			87139	19007	60652	60752	96748	96748					0.009793915411478338
VQSNREVV	8	Unmodified	_VQSNREVV_					0	0	0			REV__ENSG00000198018|ENST00000370489|ENTPD7	REV__ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.754638671875	2	465.753798	929.493044	-0.61613	-0.00028696	0.1548	7.2101E-05	-0.46132	-0.00021486	465.7539162582164	23.501	1.532	23.501	23.165	24.697	0					94	35	4	0	0	0	0.80469	1	965	965		58.782	0.55203	1	8324700	+		87140	28374	60653	60753	96749	96749					0.025477127493331864
VQSNRILGV	9	Unmodified	_VQSNRILGV_					0	0	0		HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1;ENST00000533130.1_1_8:145534985-145535559:+|nuORF;ENST00000527328.5_1_8:145534845-145537878:+|nuORF;ENST00000532338.5_1_8:145534845-145537990:+|nuORF	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.29229736328125	2	493.293091	984.571629	0.15264	7.5296E-05	-0.89508	-0.00044154	-0.74244	-0.00036624	493.29257670698473	45.986	0.93365	45.986	45.478	46.412	0					70	26	4	0	0	0	0.2508	1	4517	4517		82.241	7.9855	1	2388400			87141	9411	60654	60754	96750	96750					0.07872565054424285
VQSNRILGV	9	Unmodified	_VQSNRILGV_					0	0	0		HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1;ENST00000533130.1_1_8:145534985-145535559:+|nuORF;ENST00000527328.5_1_8:145534845-145537878:+|nuORF;ENST00000532338.5_1_8:145534845-145537990:+|nuORF	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2930603027344	2	493.293091	984.571629	-0.87631	-0.00043228	0.20615	0.00010169	-0.67017	-0.00033059	493.2930741228907	46.059	1.0679	45.907	45.343	46.411	-0.15156					72	30	4	0	0	0	0.34489	1	4511	4511		69.628	6.3214	1	2149800			87142	9411	60654	60754	96751	96751					0.07872565054424285
VQSNRILGV	9	Unmodified	_VQSNRILGV_					0	0	0		HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1;ENST00000533130.1_1_8:145534985-145535559:+|nuORF;ENST00000527328.5_1_8:145534845-145537878:+|nuORF;ENST00000532338.5_1_8:145534845-145537990:+|nuORF	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	HSF1|p.E232Gfs*25|1|0.06|ENSG00000185122|chr8:144311570-144311571|-/G|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.293091	984.571629	-0.23197	-0.00011443	-0.32897	-0.00016228	-0.56094	-0.00027671	493.29286375478415	45.964	0.85646	46.016	45.485	46.342	0.051395	0.04601	5.6459E-05	NaN	82.241	65	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2632300			87143	9411	60654	60754							0.07872565054424285
VQSTKGVID	9	Unmodified	_VQSTKGVID_					0	0	0			REV__nc|ENSG00000158887|P25189-2|MPZ	REV__nc|ENSG00000158887|P25189-2|MPZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	473.7635803222656	2	473.763832	945.513111	0.52302	0.00024779	-0.79548	-0.00037687	-0.27246	-0.00012908	473.7634056593197	23.146	1.0645	22.944	22.593	23.657	-0.20193					46	23	4	0	0	0	0.17845	1	881	881		93.143	5.3889	1	1696200	+		87144	36821	60655	60755	96752	96752					0.03817463689279066
VQSVLLER	8	Unmodified	_VQSVLLER_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2;TTLL2|p.S329Ffs*5|1|0.36|ENSG00000120440|chr6:167340878-167340879|-/T|frameshift_variant	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2825927734375	2	472.282192	942.549831	0.083685	3.9523E-05	-0.41918	-0.00019797	-0.33549	-0.00015845	472.2818940667008	47.238	1.0311	47.142	46.825	47.856	-0.096649					65	27	4	0	0	0	0.71063	1	4631	4631		66.429	2.222	1	4212600			87145	3815	60656	60756	96753	96753					0.0762576030585933
VQTAENWLPQK	11	Unmodified	_VQTAENWLPQK_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.5665283203125	3	438.56646	1312.67755	-0.1298	-5.6924E-05	0.090148	3.9536E-05	-0.039648	-1.7388E-05	438.5664482602084	55.719	0.94423	55.503	55.174	56.118	-0.21607					74	25	5	0	0	0	1.017	1	5998	5998		33.039	1.4051	1	4438900	+		87146	23105	60657	60757	96754	96754					0.03371856109197324
VQTGIFTPKV	10	Unmodified	_VQTGIFTPKV_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.3161010742188	2	545.318774	1088.623	0.14148	7.7154E-05	-4.0226	-0.0021936	-3.8811	-0.0021164	545.3163921405243	101.52	0.93464	101.39	101.03	101.96	-0.12576					49	22	4	0	0	0	1.1266	1	12638	12638		29.17	0.020503	1	1111300	+		87147	22316	60658	60758	96755	96755					0.08222889028479585
VQTGQSNI	8	Unmodified	_VQTGQSNI_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	423.719970703125	2	423.719424	845.424296	-0.98727	-0.00041833	1.611	0.00068263	0.62377	0.0002643	423.71999093653716	39.923	0.81112	39.81	39.467	40.278	-0.11222					57	21	4	0	0	0	0.47665	1	3443	3443		87.754	5.5138	1	2571200	+		87148	23290	60659	60759	96756	96756					-0.004599515503969087
VQTLSLKD	8	Unmodified	_VQTLSLKD_					0	0	0		nc|ENSG00000143416|Q13228-4|SELENBP1;nc|ENSG00000143416|Q13228-2|SELENBP1;ENSG00000143416|ENST00000368868|SELENBP1;ENST00000427977.6_1_1:151337413-151341586:-|nuORF;ENST00000455397.5_1_1:151337021-151341586:-|nuORF;ENST00000443708.5_1_1:151337021-151341586:-|nuORF;nc|ENSG00000143416|Q13228-3|SELENBP1;ENST00000474352.5_1_1:151338696-151341653:-|nuORF	nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000474352.5_1_1:151338696-151341653:-|nuORF	nc|ENSG00000143416|Q13228-4|SELENBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	452.7481384277344	2	452.260925	902.507297	-0.65443	-0.00029598	-2.1939	-0.00099222	-2.8483	-0.0012882	452.2601564535347	39.956	0.17337	39.979	39.84	40.013	0.023006					5	4	2	0	0	0	0.027866	1	3402	3402		16.473	0.83134	1	43587			87149	18345;15030	60660	60760	96757	96757					0.05214365177596392
VQTNDQPSF	9	Unmodified	_VQTNDQPSF_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.80908203125	2	518.240721	1034.46689	-0.98944	-0.00051277	0.80041	0.0004148	-0.18903	-9.7962E-05	518.2409760500225	37.714	1.0061	37.496	37.144	38.15	-0.21849					42	27	3	0	0	0	0.024	1	3097	3097		37.159	0	1	869870	+		87150	28991	60661	60761	96758	96758					-0.04896601212817586
VQTNDQPSF	9	Unmodified	_VQTNDQPSF_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	518.240721	1034.46689	-0.81733	-0.00042357	0.80933	0.00041943	-0.0079983	-4.145E-06	518.2408614624333	37.71	0.53423	37.491	37.192	37.726	-0.2195	-0.027801	0.00013781	NaN	34.173	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	903700	+		87151	28991	60661	60761							-0.04896601212817586
VQTRRRVF	8	Unmodified	_VQTRRRVF_					0	0	0			REV__ENSG00000214819|ENST00000399044|CDRT15L2	REV__ENSG00000214819|ENST00000399044|CDRT15L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.3191528320312	2	531.319974	1060.6254	-0.68999	-0.0003666	-1.158	-0.00061525	-1.848	-0.00098186	531.319452090534	93.628	1.6585	93.634	93.265	94.924	0.0059814					106	39	5	0	0	0	0.97924	1	11813	11813		40.573	4.9543	1	3894200	+		87152	28788	60662	60762	96759	96759					0.09750782276796599
VQTSFDQTPD	10	Unmodified	_VQTSFDQTPD_					0	0	0			REV__ENSG00000111667|ENST00000229268|USP5	REV__ENSG00000111667|ENST00000229268|USP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.287109375	2	569.256568	1136.49858	-0.65901	-0.00037515	1.0314	0.00058716	0.37243	0.00021201	569.256996514208	69.325	0.58282	69.058	68.827	69.41	-0.26725					22	13	2	0	0	0	0.03519	1	8003	8003		20.837	0	1	403980	+		87153	21934	60663	60763	96760	96760					-0.06420653249506358
VQTVSDRRM	9	Unmodified	_VQTVSDRRM_					0	0	0		ENST00000259339.6_1_9:132572399-132572609:+|nuORF	ENST00000259339.6_1_9:132572399-132572609:+|nuORF	ENST00000259339.6_1_9:132572399-132572609:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2806396484375	2	546.28494	1090.55533	-1.5522	-0.00084792	-4.1872	-0.0022874	-5.7394	-0.0031353	546.2825070685335	40.508	1.3864	40.278	39.771	41.157	-0.23021					87	36	4	0	0	0	0.34489	1	3475	3475		69.628	9.5094	1	1202200			87154	11433	60664	60764	96761	96761					0.013671158260194716
VQVATNLQA	9	Unmodified	_VQVATNLQA_					0	0	0			REV__UBA7|p.R100T|1|0.12|ENSG00000182179|chr3:49813310-49813310|C/G|missense_variant	REV__UBA7|p.R100T|1|0.12|ENSG00000182179|chr3:49813310-49813310|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	472.262939453125	2	472.263999	942.513445	-0.33861	-0.00015991	-0.28558	-0.00013487	-0.62419	-0.00029478	472.2638682529035	62.95	1.3012	62.71	62.37	63.671	-0.23926					118	34	5	0	0	0	0.80658	1	7281	7281		38.806	1.647	1	18045000	+		87155	37748	60665	60765	96762	96762					0.03988883409124355
VQVDPLLGQLL	11	Unmodified	_VQVDPLLGQLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8568725585938	2	597.858264	1193.70197	-2.5283	-0.0015116	-0.25718	-0.00015375	-2.7855	-0.0016653	598.3599525204835	90.759	2.4584	90.759	89.27	91.729	0					148	58	3	0	0	0	1.0017	1	11535	11535		36.447	0	1	2275200	+		87156	21245	60666	60766	96763	96763					0.11287116262769814
VQVDPLLGQLL	11	Unmodified	_VQVDPLLGQLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8564453125	2	597.858264	1193.70197	-1.0361	-0.00061944	-2.4468	-0.0014628	-3.4829	-0.0020823	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	0.98542	2	11703	11667;11703		40.058	7.2458	1	4942300	+		87157	21245	60666	60766	96764;96765	96765					0.11287116262769814
VQVDPLLGQLL	11	Unmodified	_VQVDPLLGQLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.85595703125	2	597.858264	1193.70197	-0.69485	-0.00041542	-2.7318	-0.0016332	-3.4267	-0.0020487	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	0.98542	1	11640	11640		40.058	0.80534	1	4386000	+		87158	21245	60666	60766	96766	96766					0.11287116262769814
VQVDPLLGQLL	11	Unmodified	_VQVDPLLGQLL_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.8563232421875	2	597.858264	1193.70197	0.015122	9.0409E-06	-3.1602	-0.0018894	-3.1451	-0.0018803	597.856308443694	95.479	1.5939	95.356	94.554	96.148	-0.12251					86	36	3	0	0	0	1.0238	1	11796	11796		31.53	2.3803	1	382040	+		87159	21245	60666	60766	96767	96767					0.11287116262769814
VQVEFKPLVYE	11	Unmodified	_VQVEFKPLVYE_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.9163513183594	3	450.914978	1349.7231	-0.19149	-8.6346E-05	3.2296	0.0014563	3.0381	0.0013699	450.91643640160004	24.325	1.006	24.325	23.78	24.786	0					57	22	4	0	0	0	1.0215	1	1053	1053		32.034	1.4653	1	898830	+	+	87160	19530	60667	60767	96768	96768					0.06223081571579314
VQVFEAVLHKL	11	Unmodified	_VQVFEAVLHKL_					0	0	0			REV__ENSG00000115816|ENST00000234170|CEBPZ	REV__ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8820190429688	2	641.87953	1281.74451	0.34309	0.00022022	4.1213	0.0026454	4.4644	0.0028656	641.8820396499357	94.052	2.1874	93.93	92.755	94.942	-0.12215					148	50	4	0	0	0	0.9728	1	11598	11598		42.864	2.0861	1	1209200	+		87161	22231	60668	60768	96769	96769					0.11490511390979918
VQVFLVAED	9	Unmodified	_VQVFLVAED_					0	0	0			REV__ENSG00000184985|ENST00000507866|SORCS2	REV__ENSG00000184985|ENST00000507866|SORCS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.803955078125	2	510.274032	1018.53351	-0.044493	-2.2703E-05	0.67342	0.00034363	0.62892	0.00032092	510.27397853363317	86.403	1.1078	86.358	86.076	87.184	-0.045105					37	25	2	0	0	0	0.02435	1	10855	10855		60.972	16.855	1	491360	+		87162	27716	60669	60769	96770	96770					0.024986343490809304
VQVGETFKV	9	Unmodified	_VQVGETFKV_					0	0	0		ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	503.7818908691406	2	503.782025	1005.5495	-0.4164	-0.00020978	0.10882	5.4822E-05	-0.30758	-0.00015495	503.7818695110624	52.771	0.73791	52.771	52.311	53.049	0					42	18	3	0	0	0	0.14181	1	5675	5675		101.25	5.4375	1	1543600			87163	5513	60670	60770	96771	96771					0.046943405859906306
VQVGETFKV	9	Unmodified	_VQVGETFKV_					0	0	0		ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	503.7822265625	2	503.782025	1005.5495	0.0024689	1.2438E-06	-0.18529	-9.3346E-05	-0.18282	-9.2102E-05	503.78167117708193	52.81	0.58232	52.663	52.366	52.948	-0.14724					45	14	4	0	0	0	0.18994	1	5650	5650		90.601	0.23104	1	1395600			87164	5513	60670	60770	96772	96772					0.046943405859906306
VQVGETFKV	9	Unmodified	_VQVGETFKV_					0	0	0		ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	ENSG00000141646|ENST00000342988|SMAD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.78125	2	503.782025	1005.5495	0.21093	0.00010626	-0.52094	-0.00026244	-0.31002	-0.00015618	503.7815318879673	52.595	0.57192	52.687	52.404	52.976	0.091938					42	14	4	0	0	0	0.071379	1	5576	5576		120.87	5.3744	1	1748300			87165	5513	60670	60770	96773	96773					0.046943405859906306
VQVGQDLK	8	Unmodified	_VQVGQDLK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	443.2921142578125	2	443.753267	885.491981	0.3568	0.00015833	0.047189	2.094E-05	0.40399	0.00017927	443.7530447761836	36.917	0.6107	36.854	36.588	37.198	-0.063385					21	15	2	0	0	0	0.027866	1	2959	2959		47.916	3.7988	1	139600			87166	6479	60671	60771	96774	96774					0.044654983804207404
VQVHKETFD	9	Unmodified	_VQVHKETFD_					0	0	0			REV__nc|ENSG00000145604|Q13309-4|SKP2	REV__nc|ENSG00000145604|Q13309-4|SKP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.2409057617188	2	551.780013	1101.54547	-0.62583	-0.00034532	2.8729	0.0015852	2.2471	0.0012399	551.7824320540246	83.094	0.38757	83.094	82.878	83.266	0					17	8	3	0	0	0	0.024447	1	10395	10395		40.778	28.571	1	160130	+		87167	24416	60672	60772	96775	96775					-0.0012374890770843194
VQVILLRALAF	11	Unmodified	_VQVILLRALAF_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201;nc|ENSG00000188807|Q5SNT2-2|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.4021606445312	2	621.900266	1241.78598	-2.0128	-0.0012517	3.9959	0.0024851	1.9831	0.0012333	621.9024579436951	106.09	0.34456	105.96	105.77	106.12	-0.13279					29	13	3	0	0	0	1.0483	1	13203	13203		25.574	6.4705	1	410230			87168	9753	60673	60773	96776	96776					0.1747569215033309
VQVIPGSK	8	Unmodified	_VQVIPGSK_					0	0	0		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.2892150878906	2	414.252903	826.491253	-0.45116	-0.00018689	0.82221	0.0003406	0.37105	0.00015371	414.2530486045019	34.475	0.44083	34.299	33.972	34.413	-0.17557					14	10	2	0	0	0	0.027866	1	2507	2507		11.511	0	1	102020			87169	4442	60674	60774	96777	96777					0.07106703731381003
VQVKRMIML	9	Oxidation (M)	_VQVKRM(Oxidation (M))IML_		VQVKRM(0.5)IM(0.5)L		VQVKRM(0)IM(0)L	0	0	1			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.330078125	2	567.330304	1132.64606	-0.48805	-0.00027688	-0.73534	-0.00041718	-1.2234	-0.00069406	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.72875	1	11357	11357		44.117	8.4985	2	14972000	+		87170	33664	60675	60775	96778	96778		919;920			0.08503868549928484
VQVKRMIML	9	Oxidation (M)	_VQVKRMIM(Oxidation (M))L_		VQVKRM(0.031)IM(0.969)L		VQVKRM(-15)IM(15)L	0	0	1			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3299560546875	2	567.330304	1132.64606	-0.10765	-6.1074E-05	-0.84497	-0.00047938	-0.95262	-0.00054045	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	0.72875	1	10942	10942		44.117	16.035	2	5896300	+		87171	33664	60675	60775	96779	96779		919;920			0.08503868549928484
VQVKRMIML	9	Oxidation (M)	_VQVKRMIM(Oxidation (M))L_		VQVKRM(0.168)IM(0.832)L		VQVKRM(-7)IM(7)L	0	0	1			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.3303833007812	2	567.330304	1132.64606	-0.10453	-5.9304E-05	-0.80915	-0.00045905	-0.91368	-0.00051836	567.329698253714	93.908	1.2793	93.76	93.435	94.715	-0.14771					95	29	5	0	0	0	0.72875	1	11554	11554		44.117	10.195	2	1243400	+		87172	33664	60675	60775	96780	96780		919;920			0.08503868549928484
VQVKRMIML	9	Oxidation (M)	_VQVKRMIM(Oxidation (M))L_					0	0	1			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.330304	1132.64606	-0.47573	-0.00026989	-0.71688	-0.0004067	-1.1926	-0.0006766	567.3297910949516	93.748	1.3588	93.748	93.429	94.788	0	-0.0027713	-0.00034092	NaN	44.117	88	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	991010	+		87173	33664	60675	60775				919;920			0.08503868549928484
VQVKRMIML	9	Oxidation (M)	_VQVKRMIM(Oxidation (M))L_					0	0	1			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	567.330304	1132.64606	-0.56082	-0.00031817	-0.72962	-0.00041394	-1.2904	-0.00073211	567.3298040671086	93.743	1.8865	93.739	93.41	95.297	-0.0042038	-0.011994	-0.00035539	NaN	44.117	91	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901670	+		87174	33664	60675	60775				919;920			0.08503868549928484
VQVKRMIML	9	Oxidation (M)	_VQVKRMIM(Oxidation (M))L_					0	0	1			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	567.330304	1132.64606	-1.3063	-0.00074111	0.21455	0.00012172	-1.0918	-0.0006194	567.3303448615179	93.793	1.6201	93.799	93.391	95.011	0.0059814	0.048688	0.00071592	NaN	44.117	100	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	940770	+		87175	33664	60675	60775				919;920			0.08503868549928484
VQVKRMIML	9	Oxidation (M)	_VQVKRMIM(Oxidation (M))L_					0	0	1			REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	REV__ENST00000489282.1_1_1:59158492-59165724:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	567.330304	1132.64606	-0.94755	-0.00053757	0.038458	2.1819E-05	-0.90909	-0.00051575	567.33021605975	93.846	1.1071	93.706	93.353	94.46	-0.13995	-0.044986	0.00051612	NaN	44.117	91	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1125700	+		87176	33664	60675	60775				919;920			0.08503868549928484
VQVKVIFKCSA	11	Unmodified	_VQVKVIFKCSA_					0	0	0			REV__ENSG00000102359|ENST00000373004|SRPX2	REV__ENSG00000102359|ENST00000373004|SRPX2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.3558349609375	2	611.354834	1220.69511	-1.8097	-0.0011063	3.9907	0.0024397	2.181	0.0013334	611.3571222872552	94.312	3.2562	94.174	93.355	96.612	-0.13779					267	75	6	0	0	0	1.0017	1	11563	11563		36.447	8.3653	1	13060000	+		87177	21303	60676	60776	96781	96781					0.0935948011056098
VQVLIEHI	8	Unmodified	_VQVLIEHI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MSMS	OPSCC_39_ClassI_Rep-1	1	475.7876281738281	2	475.78711	949.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.611	1	59.611	59.111	60.111	0								0	0	0	0.32467	1	6815	6815		76.774	8.2894	1				87178	456	60677	60777	96782	96782					0.08286948311229025
VQVLIEHI	8	Unmodified	_VQVLIEHI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	475.7879638671875	2	475.78711	949.559667	0.70302	0.00033449	-0.22567	-0.00010737	0.47735	0.00022712	475.78652064099265	59.803	1.0055	59.602	59.281	60.286	-0.20016					46	26	5	0	0	0	0.47665	1	6818	6818		87.754	7.8151	1	1770800			87179	456	60677	60777	96783	96783					0.08286948311229025
VQVLIEHI	8	Unmodified	_VQVLIEHI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.7878112792969	2	475.78711	949.559667	0.3853	0.00018332	0.1617	7.6934E-05	0.547	0.00026025	475.7866721527001	59.445	0.77869	59.531	59.277	60.056	0.085682					30	20	3	0	0	0	0.53523	1	6714	6714		82.305	10.927	1	1557100			87180	456	60677	60777	96784	96784					0.08286948311229025
VQVLIEHI	8	Unmodified	_VQVLIEHI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.78711	949.559667	-0.15866	-7.5487E-05	1.7811	0.00084741	1.6224	0.00077192	475.78741272166275	60.1	0.45682	59.924	59.741	60.198	-0.1761	0.14791	0.0010633	NaN	87.754	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236210			87181	456	60677	60777							0.08286948311229025
VQVLIEHI	8	Unmodified	_VQVLIEHI_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.78711	949.559667	-0.3777	-0.0001797	2.0734	0.00098652	1.6958	0.00080682	475.7875505309388	60.3	0.54203	60.047	59.794	60.336	-0.25373	0.27066	0.0013415	NaN	87.754	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247290			87182	456	60677	60777							0.08286948311229025
VQVLPRARASP	11	Unmodified	_VQVLPRARASP_					0	0	0		ENST00000491721.1_1_2:200776161-200820135:+|nuORF	ENST00000491721.1_1_2:200776161-200820135:+|nuORF	ENST00000491721.1_1_2:200776161-200820135:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	597.356689453125	2	597.359296	1192.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.72	1	90.72	90.22	91.22	0								0	0	0	1.0562	1	11476	11476		40.058	8.5284	1				87183	15468	60678	60778	96785	96785					0.11539589791209437
VQVLPRTAHRL	11	Unmodified	_VQVLPRTAHRL_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;CFAP46|p.P2405Lfs*5|1|0.15|ENSG00000171811|chr10:132814721-132814721|G/-|frameshift_variant	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	646.3665771484375	2	645.39367	1288.77279	-2.0264	-0.0013078	2.1431	0.0013831	0.11666	7.5293E-05	645.3949788703657	46.284	0.44473	46.188	45.923	46.368	-0.096649					22	11	3	0	0	0	0.024731	1	4445	4445		35.152	4.8343	1	245110			87184	8195	60679	60779	96786	96786					0.1399525409094622
VQVMEILGL	9	Unmodified	_VQVMEILGL_					0	0	0			REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.29058837890625	2	501.288628	1000.5627	-0.38964	-0.00019532	3.5736	0.0017914	3.184	0.0015961	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.80003	1	10821	10821		39.253	5.0803	1	8504000	+		87185	31340	60680	60780	96787	96787					0.06244455373735036
VQVMEILGL	9	Unmodified	_VQVMEILGL_					0	0	0			REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2906188964844	2	501.288628	1000.5627	0.34699	0.00017394	3.201	0.0016046	3.548	0.0017786	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	0.87448	1	10363	10363		34.173	1.3601	1	10557000	+		87186	31340	60680	60780	96788	96788					0.06244455373735036
VQVMEILGL	9	Unmodified	_VQVMEILGL_					0	0	0			REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	REV__ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.29046630859375	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.77768	1	10501	10501		40.778	5.1599	1	10074000	+		87187	31340	60680	60780	96789	96789					0.06244455373735036
VQVPPRFVNKV	11	Unmodified	_VQVPPRFVNKV_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8819580078125	2	641.885147	1281.75574	-2.5036	-0.001607	-1.8686	-0.0011994	-4.3722	-0.0028064	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.018	1	11690	11690		32.812	8.2932	1	1400600			87188	6406	60681	60781	96790	96790					0.1261333348509197
VQVPPRFVNKV	11	Unmodified	_VQVPPRFVNKV_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;OBSCN-KRT17|1|fusion;nc|ENSG00000154358|Q5VST9-3|OBSCN;OBSCN|p.F6732Sfs*20|1|0.12|ENSG00000154358|chr1:228370705-228370705|C/-|frameshift_variant	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8827514648438	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	0.98904	2	11781	11781;11877		39.253	5.3312	1	3558500			87189	6406	60681	60781	96791;96792	96791					0.1261333348509197
VQVPVPVCV	9	Unmodified	_VQVPVPVCV_					0	0	0			REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.2720642089844	2	470.270238	938.525924	0.89577	0.00042125	3.642	0.0017127	4.5378	0.002134	470.2718642062893	91.209	1.3358	91.22	90.742	92.077	0.011276					80	31	4	0	0	0	0.88411	1	11458	11458		33.516	1.5607	1	4377900	+		87190	25407	60682	60782	96793	96793					0.05420203547816982
VQVPVPVTV	9	Unmodified	_VQVPVPVTV_					0	0	0		ENST00000566078.1_1_16:67644735-67645545:+|nuORF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF;CTCF|p.A171Gfs*20|1|0.17|ENSG00000102974|chr16:67611338-67611339|-/G|frameshift_variant;CTCF|p.T204Nfs*26|2|0.34|ENSG00000102974|chr16:67611435-67611436|-/A|frameshift_variant	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	469.2896423339844	2	469.289485	936.564418	0.86356	0.00040526	-0.23504	-0.0001103	0.62853	0.00029496	469.28903466094505	73.738	1.1552	73.738	73.438	74.593	0					51	27	3	0	0	0	0.057894	2	9018	9007;9018		125.81	49.04	1	2028300			87191	599	60683	60783	96794;96795	96795					0.09359832453981198
VQVPVPVTV	9	Unmodified	_VQVPVPVTV_					0	0	0		ENST00000566078.1_1_16:67644735-67645545:+|nuORF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF;CTCF|p.A171Gfs*20|1|0.17|ENSG00000102974|chr16:67611338-67611339|-/G|frameshift_variant;CTCF|p.T204Nfs*26|2|0.34|ENSG00000102974|chr16:67611435-67611436|-/A|frameshift_variant	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	469.2889099121094	2	469.289485	936.564418	0.32676	0.00015335	0.44976	0.00021107	0.77652	0.00036441	469.2893104159697	74.01	0.81996	73.739	73.577	74.397	-0.27126					37	19	3	0	0	0	0.047345	2	9025	9013;9025		129.68	58.387	1	2483700			87192	599	60683	60783	96796;96797	96797					0.09359832453981198
VQVPVPVTV	9	Unmodified	_VQVPVPVTV_					0	0	0		ENST00000566078.1_1_16:67644735-67645545:+|nuORF;CTCF|p.G585Efs*42|1|0.25|ENSG00000102974|chr16:67629446-67629458|GAGGGGGAAAATG/-|frameshift_variant;ENSG00000102974|ENST00000264010|CTCF;CTCF|p.A171Gfs*20|1|0.17|ENSG00000102974|chr16:67611338-67611339|-/G|frameshift_variant;CTCF|p.T204Nfs*26|2|0.34|ENSG00000102974|chr16:67611435-67611436|-/A|frameshift_variant	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	469.28997802734375	2	469.289485	936.564418	0.17865	8.3841E-05	0.4072	0.00019109	0.58585	0.00027493	469.2892995543324	73.762	0.88104	73.771	73.558	74.439	0.0096512					40	20	3	0	0	0	0.047345	2	8948	8935;8948		129.68	47.378	1	1940000			87193	599	60683	60783	96798;96799	96799					0.09359832453981198
VQVQGAQIIY	10	Unmodified	_VQVQGAQIIY_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.8152465820312	2	559.813856	1117.61316	-0.54513	-0.00030517	3.5584	0.0019921	3.0133	0.0016869	559.8157653628313	80.904	2.796	80.904	79.911	82.707	0					244	67	6	0	0	0	0.71272	1	10187	10187		66.429	0.6261	1	11331000	+		87194	20433	60684	60784	96800	96800					0.05905701023107213
VQVRRKVPV	9	Unmodified	_VQVRRKVPV_					0	0	0		ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant;ZFP36L2|p.R160Pfs*314|1|0.33|ENSG00000152518|chr2:43225325-43225326|-/G|frameshift_variant;ZFP36L2|p.R130Sfs*344|1|0.41|ENSG00000152518|chr2:43225416-43225417|-/A|frameshift_variant;ZFP36L2|p.H133Qfs*341|1|0.44|ENSG00000152518|chr2:43225405-43225406|-/T|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.79|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant	ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant	ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.8319091796875	2	540.85365	1079.69275	-0.9615	-0.00052003	2.3006	0.0012443	1.3391	0.00072424	540.8550452672404	75.588	0.2968	75.344	75.077	75.374	-0.24455					15	7	3	0	0	0	0.024477	1	9232	9232		44.117	13.613	1	409000			87195	38176	60685	60785	96801	96801					0.1560881248772148
VQVRRKVPV	9	Unmodified	_VQVRRKVPV_					0	0	0		ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant;ZFP36L2|p.R160Pfs*314|1|0.33|ENSG00000152518|chr2:43225325-43225326|-/G|frameshift_variant;ZFP36L2|p.R130Sfs*344|1|0.41|ENSG00000152518|chr2:43225416-43225417|-/A|frameshift_variant;ZFP36L2|p.H133Qfs*341|1|0.44|ENSG00000152518|chr2:43225405-43225406|-/T|frameshift_variant;ZFP36L2|p.G145Rfs*329|1|0.79|ENSG00000152518|chr2:43225372-43225373|-/C|frameshift_variant	ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant	ZFP36L2|p.T156Rfs*308|1|0.11|ENSG00000152518|chr2:43225310-43225338|CTCTCCTCGAAGGGCCGGCACAGCTCGGT/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.8316650390625	2	540.85365	1079.69275	-0.36775	-0.0001989	-2.8958	-0.0015662	-3.2636	-0.0017651	540.8524676014544	75.512	0.17448	75.522	75.435	75.609	0.010376					5	4	2	0	0	0	0.024523	1	9210	9210		37.159	5.6293	1	350120			87196	38176	60685	60785	96802	96802					0.1560881248772148
VQVSHAKGPRV	11	Unmodified	_VQVSHAKGPRV_					0	0	0			REV__ENSG00000225781|ENST00000418316|OR6V1	REV__ENSG00000225781|ENST00000418316|OR6V1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.343017578125	2	589.343646	1176.67274	0.92698	0.00054631	-2.8783	-0.0016963	-1.9514	-0.00115	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0392	1	11251	11251		28.081	0.19925	1	4746700	+		87197	28868	60686	60786	96803	96803					0.09147016757128767
VQVSNFKS	8	Unmodified	_VQVSNFKS_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	454.7448425292969	2	454.745442	907.476331	1.0596	0.00048187	-1.8285	-0.0008315	-0.76885	-0.00034963	454.7444619996286	97.442	1.7307	97.442	96.705	98.435	-3.0518E-05					85	39	3	0	0	0	1.0198	1	12356	12356		34.173	1.3601	1	181080			87198	5985	60687	60787	96804	96804					0.01889211863374385
VQVSRGPRF	9	Unmodified	_VQVSRGPRF_					0	0	0		ENST00000427497.3_1_17:17135133-17140372:-|nuORF	ENST00000427497.3_1_17:17135133-17140372:-|nuORF	ENST00000427497.3_1_17:17135133-17140372:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.2567138671875	2	523.298707	1044.58286	-0.5292	-0.00027693	0.17405	9.1082E-05	-0.35515	-0.00018585	523.2987193533228	22.936	0.36298	22.875	22.663	23.026	-0.06086					10	7	2	0	0	0	0.024397	1	836	836		39.253	3.6345	1	68300			87199	14111	60688	60788	96805	96805					0.06235387148558402
VQVSTWPVPS	10	Unmodified	_VQVSTWPVPS_					0	0	0		nc|ENSG00000134461|Q6P6B7-2|ANKRD16	nc|ENSG00000134461|Q6P6B7-2|ANKRD16	nc|ENSG00000134461|Q6P6B7-2|ANKRD16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.293701171875	2	550.292756	1098.57096	-0.23704	-0.00013044	0.89183	0.00049077	0.65478	0.00036032	550.2933044068319	16.788	0.23172	16.58	16.48	16.712	-0.20777					7	4	2	0	0	0	1.1211	1	102	102		21.686	4.3208	1	22262			87200	18288	60689	60789	96806	96806					0.02561725614691568
VQVSVAPAGL	10	Unmodified	_VQVSVAPAGL_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.77716064453125	2	470.776742	939.538931	-0.34861	-0.00016412	0.54198	0.00025515	0.19337	9.1035E-05	470.7768548710248	61.947	0.63401	61.69	61.423	62.058	-0.25725					36	15	3	0	0	0	0.45367	1	6945	6945		93.195	2.8256	1	1141000			87201	1343	60690	60790	96807	96807					0.0667435793156983
VQVTECTLRDP	11	Unmodified	_VQVTECTLRDP_					0	0	0		ENST00000592274.1_1_19:3612892-3612958:+|nuORF	ENST00000592274.1_1_19:3612892-3612958:+|nuORF	ENST00000592274.1_1_19:3612892-3612958:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	421.7277526855469	3	420.879939	1259.61799	-0.94546	-0.00039793	-3.9443	-0.0016601	-4.8898	-0.002058	420.8783534326908	25.149	0.61102	25.114	24.904	25.515	-0.034395					18	14	2	0	0	0	0.024732	1	1166	1166		5.1424	0	1	63800			87202	17368	60691	60791	96808	96808					-0.0014378289645264886
VQVTIPQSL	9	Unmodified	_VQVTIPQSL_					0	0	0			REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF	REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.7880859375	2	492.78985	983.565146	-0.44391	-0.00021875	-2.7105	-0.0013357	-3.1544	-0.0015544	492.7882557787374	20.787	0.9152	20.683	20.277	21.192	-0.10477					39	18	4	0	0	0	0.6504	1	568	568		49.442	8.8689	1	738970	+		87203	24665	60692	60792	96809	96809					0.07270627103048355
VQVTKAIN	8	Unmodified	_VQVTKAIN_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.7746887207031	2	436.763635	871.512717	-0.57163	-0.00024967	1.8878	0.00082451	1.3161	0.00057485	436.7642822111606	90.192	0.40681	90.067	90.01	90.416	-0.12512					15	9	2	0	0	0	0.027866	1	11050	11050		30.504	0	1	265300			87204	9402	60693	60793	96810	96810					0.07182088760077932
VQVTSNFLY	9	Unmodified	_VQVTSNFLY_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.77978515625	2	535.779482	1069.54441	-0.15067	-8.0725E-05	-0.082716	-4.4317E-05	-0.23338	-0.00012504	535.7793588840555	63.625	1.2809	63.367	62.792	64.073	-0.25824					80	32	4	0	0	0	0.59099	1	7169	7169		53.351	2.1588	1	7271200			87205	1478	60694	60794	96811	96811					0.0124203672337444
VQVVLRTK	8	Unmodified	_VQVVLRTK_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2;REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-1|HMCN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.29541015625	2	471.808377	941.6022	-1.4196	-0.00066979	-0.74287	-0.00035049	-2.1625	-0.0010203	471.8091627699191	40.902	0.39767	40.671	40.45	40.848	-0.23029					15	10	2	0	0	0	0.027866	1	3541	3541		54.776	0	1	87312	+		87206	24611;36769	60695	60795	96812	96812					0.12906343439465218
VQWDGRQDA	9	Unmodified	_VQWDGRQDA_					0	0	0		ENST00000314728.9_1_17:19239467-19239692:+|nuORF	ENST00000314728.9_1_17:19239467-19239692:+|nuORF	ENST00000314728.9_1_17:19239467-19239692:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.2782592773438	2	537.751787	1073.48902	-0.43661	-0.00023479	3.7259	0.0020036	3.2893	0.0017688	537.7536479669941	25.255	1.4542	25.335	24.595	26.049	0.08009					48	33	2	0	0	0	0.024292	1	1033	1033		68.787	2.3575	1	117340			87207	12121	60696	60796	96813	96813					-0.04478376744373236
VQYAVARCAD	10	Unmodified	_VQYAVARCAD_					0	0	0			REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF	REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.3236694335938	2	548.266216	1094.51788	-0.057632	-3.1597E-05	-4.1934	-0.0022991	-4.251	-0.0023307	548.2641565040267	75.36	0.56388	75.185	74.943	75.507	-0.17548					20	13	2	0	0	0	0.03519	1	8873	8873		9.1829	0.95161	1	162850	+		87208	33946	60697	60797	96814	96814					-0.025599754396125718
VQYHGQHRV	9	Unmodified	_VQYHGQHRV_					0	0	0		ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.2913208007812	2	562.291414	1122.56827	0.31644	0.00017793	-0.61944	-0.00034831	-0.303	-0.00017037	562.2909376975182	19.535	0.61246	19.535	19.268	19.88	0					26	12	3	0	0	0	0.35646	1	429	429		68.787	12.353	1	369760			87209	16716	60698	60798	96815	96815					0.011893150004198105
VQYHGQHRV	9	Unmodified	_VQYHGQHRV_					0	0	0		ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.2906494140625	2	562.291414	1122.56827	-0.48863	-0.00027475	0.23982	0.00013485	-0.24881	-0.00013991	562.2914144987296	19.769	0.6683	19.65	19.397	20.066	-0.11872					30	13	3	0	0	0	0.50848	1	443	443		58.782	12.325	1	305550			87210	16716	60698	60798	96816	96816					0.011893150004198105
VQYHGQHRV	9	Unmodified	_VQYHGQHRV_					0	0	0		ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.2910766601562	2	562.291414	1122.56827	1.8465	0.0010383	-2.3027	-0.0012948	-0.4562	-0.00025652	562.2900037201075	19.696	0.72626	19.762	19.538	20.264	0.066195					29	14	4	0	0	0	0.53979	1	416	416		56.721	14.325	1	290130			87211	16716	60698	60798	96817	96817					0.011893150004198105
VQYHGQHRV	9	Unmodified	_VQYHGQHRV_					0	0	0		ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	562.291414	1122.56827	1.059	0.00059545	1.1415	0.00064184	2.2004	0.0012373	562.2908645069502	19.965	0.38843	19.765	19.554	19.943	-0.2001	0.055292	0.0020404	NaN	68.787	21	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56912			87212	16716	60698	60798							0.011893150004198105
VQYHGQHRV	9	Unmodified	_VQYHGQHRV_					0	0	0		ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	562.291414	1122.56827	0.43476	0.00024446	0.21134	0.00011884	0.6461	0.0003633	562.2910673498748	20.061	0.58619	19.837	19.434	20.02	-0.22344	0.12727	0.00099441	NaN	68.787	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56116			87213	16716	60698	60798							0.011893150004198105
VQYLGSVSE	9	Unmodified	_VQYLGSVSE_					0	0	0		ENSG00000180815|ENST00000338883|MAP3K15;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF	ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000180815|ENST00000338883|MAP3K15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2713928222656	2	491.248015	980.481476	0.01875	9.2111E-06	0.93712	0.00046036	0.95587	0.00046957	491.2484119625089	63.425	0.43194	63.173	62.976	63.408	-0.25141					17	11	2	0	0	0	0.024457	1	7387	7387		29.15	10.825	1	185870			87214	8999	60699	60799	96818	96818					-0.009545290646542526
VQYNEPLKV	9	Unmodified	_VQYNEPLKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3001708984375	2	545.300581	1088.58661	-1.1252	-0.0006136	0.090372	4.928E-05	-1.0349	-0.00056432	545.3008942050091	50.163	1.2381	50.163	49.437	50.675	0					87	35	4	0	0	0	0.012922	5	5233	5212;5222;5233;5246;5259		172.25	58.837	1	17468000			87215	6055	60700	60800	96819;96820;96821;96822;96823	96821					0.0458601213174461
VQYNEPLKV	9	Unmodified	_VQYNEPLKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3004150390625	2	545.300581	1088.58661	-0.66988	-0.00036529	-0.099407	-5.4207E-05	-0.76929	-0.00041949	545.3006494210508	50.376	0.90348	50.225	49.817	50.721	-0.1512					69	26	4	0	0	0	0.013924	5	5252	5219;5228;5240;5252;5265		167.23	60.221	1	17795000			87216	6055	60700	60800	96824;96825;96826;96827;96828	96827					0.0458601213174461
VQYNEPLKV	9	Unmodified	_VQYNEPLKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3004150390625	2	545.300581	1088.58661	-0.78404	-0.00042754	-0.039633	-2.1612E-05	-0.82368	-0.00044915	545.300686903142	50.018	0.83449	50.099	49.775	50.609	0.08099					79	24	5	0	0	0	0.013337	5	5129	5118;5129;5143;5155;5168		176.44	66.108	1	19772000			87217	6055	60700	60800	96829;96830;96831;96832;96833	96830					0.0458601213174461
VQYPPTRPP	9	Unmodified	_VQYPPTRPP_					0	0	0			REV__nc|ENSG00000178287|Q08648|SPAG11B	REV__nc|ENSG00000178287|Q08648|SPAG11B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2568359375	2	527.787641	1053.56073	-0.92668	-0.00048909	2.5973	0.0013708	1.6706	0.00088174	527.7888257064961	44.822	0.35505	44.57	44.354	44.709	-0.25252					12	8	2	0	0	0	0.024527	1	4204	4204		24.519	3.5723	1	83213	+		87218	36979	60701	60801	96834	96834					0.03609162680118061
VQYQQLLPT	9	Unmodified	_VQYQQLLPT_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3088989257812	2	545.300581	1088.58661	-0.38206	-0.00020834	2.938	0.0016021	2.5559	0.0013937	545.3018979417643	68.771	1.1907	68.541	68.275	69.466	-0.23048					71	28	4	0	0	0	0.024427	1	7974	7974		34.173	3.8548	1	1715900	+		87219	27091	60702	60802	96835	96835					0.0458601213174461
VQYTLPLEL	9	Unmodified	_VQYTLPLEL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3048095703125	2	538.305332	1074.59611	-0.33308	-0.0001793	-0.91482	-0.00049245	-1.2479	-0.00067175	538.305257318701	89.195	1.0062	89.195	88.725	89.731	0					47	23	3	0	0	0	0.56934	1	11268	11268		54.776	0.053964	1	1026300			87220	10421	60703	60803	96836	96836					0.0617978041727838
VRAAFVQLT	9	Unmodified	_VRAAFVQLT_					0	0	0		nc|ENSG00000138311|Q70YC5-2|ZNF365;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365;nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.79852294921875	2	502.798009	1003.58147	0.24568	0.00012353	-0.90828	-0.00045668	-0.6626	-0.00033315	502.7974271658914	42.735	1.311	42.761	42.459	43.77	0.026012					88	35	4	0	0	0	0.75397	1	3907	3907		42.396	4.5846	1	4291400			87221	5224	60704	60804	96837	96837					0.07981753059789298
VRAAGPGPVPV	11	Unmodified	_VRAAGPGPVPV_					0	0	0			REV__ENST00000546455.5_1_12:47629220-47629460:+|nuORF	REV__ENST00000546455.5_1_12:47629220-47629460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7445068359375	2	510.303458	1018.59236	-1.7485	-0.00089225	1.4533	0.0007416	-0.29522	-0.00015065	510.3035026748559	38.461	1.3917	38.489	37.782	39.174	0.027279					68	38	3	0	0	0	0.024759	1	3257	3257		34.173	0	1	616360	+		87222	34842	60705	60805	96838	96838					0.08381155434096854
VRAAHHTSLV	10	Unmodified	_VRAAHHTSLV_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.8111572265625	2	545.809439	1089.60433	-0.96752	-0.00052808	3.3798	0.0018447	2.4123	0.0013167	545.8112395180657	91.515	1.3143	91.503	91.156	92.471	-0.012383					82	31	5	0	0	0	0.40067	2	11560	11548;11560		98.629	29.843	1	4054900	+		87223	23365	60706	60806	96839;96840	96840					0.06310772177266699
VRAAHHTSLV	10	Unmodified	_VRAAHHTSLV_					0	0	0			REV__ENSG00000133247|ENST00000255613|KMT5C	REV__ENSG00000133247|ENST00000255613|KMT5C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.8109130859375	2	545.809439	1089.60433	-0.37303	-0.00020361	3.5414	0.0019329	3.1684	0.0017293	545.8117218925679	91.512	1.7794	91.523	91.237	93.017	0.011276					99	42	5	0	0	0	0.40067	1	11513	11513		98.629	5.4339	1	4663500	+		87224	23365	60706	60806	96841	96841					0.06310772177266699
VRAEREAVD	9	Unmodified	_VRAEREAVD_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.8126220703125	2	522.775262	1043.53597	-0.12254	-6.4061E-05	1.6629	0.00086933	1.5404	0.00080527	522.7756763124207	41.741	0.55317	41.764	41.564	42.117	0.023006					22	15	2	0	0	0	0.024374	1	3728	3728		40.778	14.085	1	235110	+		87225	26116	60707	60807	96842	96842					0.015944828067631533
VRAFVQVHTIL	11	Unmodified	_VRAFVQVHTIL_					0	0	0			REV__ATP13A1|p.P832T|1|0.05|ENSG00000105726|chr19:19649782-19649782|G/T|missense_variant	REV__ATP13A1|p.P832T|1|0.05|ENSG00000105726|chr19:19649782-19649782|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8823852539062	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0075	1	11804	11804		35.152	3.6222	1	3558500	+		87226	19183	60708	60808	96843	96843					0.12613333485137446
VRAFVQVHTIL	11	Unmodified	_VRAFVQVHTIL_					0	0	0			REV__ATP13A1|p.P832T|1|0.05|ENSG00000105726|chr19:19649782-19649782|G/T|missense_variant	REV__ATP13A1|p.P832T|1|0.05|ENSG00000105726|chr19:19649782-19649782|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8822631835938	2	641.885147	1281.75574	-0.57436	-0.00036868	-3.7858	-0.00243	-4.3602	-0.0027987	641.8826074791839	94.206	1.6685	94.058	93.348	95.016	-0.14771					136	38	4	0	0	0	0.9728	1	11571	11571		42.864	6.4175	1	1351900	+		87227	19183	60708	60808	96844	96844					0.12613333485137446
VRAFYVNVLN	10	Unmodified	_VRAFYVNVLN_					0	0	0		ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8565063476562	2	597.835123	1193.65569	-2.0076	-0.0012002	0.31315	0.00018721	-1.6945	-0.001013	598.3366341476034	92.777	0.4306	92.634	92.57	93	-0.14356					10	9	2	0	0	0	0.03519	1	11402	11402		49.442	0	1	43100			87228	3881	60709	60809	96845	96845					0.06661096151333368
VRAGPAARV	9	Unmodified	_VRAGPAARV_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	448.77490234375	2	448.774868	895.535184	-0.22576	-0.00010132	0.47402	0.00021273	0.24826	0.00011141	448.77492642052704	23.301	1.1762	23.301	23.033	24.209	0					42	27	2	0	0	0	0.40179	1	896	896		65.803	2.4969	1	963110	+		87229	28740	60710	60810	96846	96846					0.08323732948372253
VRAGPAARV	9	Unmodified	_VRAGPAARV_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	448.774868	895.535184	-0.22576	-0.00010132	0.47402	0.00021273	0.24826	0.00011141	448.77492642052704	23.301	1.1762	23.301	23.033	24.209	0	0.045162	-0.00014533	NaN	65.803	42	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963110	+		87230	28740	60710	60810							0.08323732948372253
VRAGPVRN	8	Unmodified	_VRAGPVRN_					0	0	0		ENST00000360642.7_1_4:170541712-170541889:+|nuORF;ENST00000512813.5_1_4:170541712-170557134:+|nuORF	ENST00000360642.7_1_4:170541712-170541889:+|nuORF	ENST00000360642.7_1_4:170541712-170541889:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7591857910156	2	434.759218	867.503883	0.30541	0.00013278	-0.18538	-8.0597E-05	0.12003	5.2183E-05	434.7590631513954	86.846	1.5284	86.801	86.076	87.604	-0.045105					104	35	5	0	0	0	0.97924	1	10871	10871		40.573	0	1	5549200			87231	12773	60711	60811	96847	96847					0.06483159914273529
VRAHTKAS	8	Unmodified	_VRAHTKAS_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.25152587890625	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	0.97924	1	9760	9760		40.573	3.4135	1	1708300	+		87232	28270	60712	60812	96848	96848					0.048394536773685104
VRAHTKAS	8	Unmodified	_VRAHTKAS_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25140380859375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	1.043	1	9622	9622		30.504	5.0535	1	2257900	+		87233	28270	60712	60812	96849	96849					0.048394536773685104
VRAHTKAS	8	Unmodified	_VRAHTKAS_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.251708984375	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	1.0198	2	9677	9597;9677		34.173	2.8053	1	2292300	+		87234	28270	60712	60812	96850;96851	96851					0.048394536773685104
VRAHTKAS	8	Unmodified	_VRAHTKAS_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2514343261719	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0338	3	9536	9421;9525;9536		31.955	4.8428	1	1872200	+		87235	28270	60712	60812	96852;96853;96854	96854					0.048394536773685104
VRAHVVRIYRE	11	Unmodified	_VRAHVVRIYRE_					0	0	0			REV__ENSG00000054277|ENST00000366554|OPN3	REV__ENSG00000054277|ENST00000366554|OPN3	MSMS	OPSCC_40_ClassI_Rep-1	4	466.60809326171875	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.705	1	97.568	97.068	98.068	-0.1367								0	0	0	1.4681	1	12082	12082		17.167	2.4731	1		+		87236	20187	60713	60813	96855	96855					0.12262041493931974
VRAKDSITSL	10	Unmodified	_VRAKDSITSL_					0	0	0		ENSG00000126467|ENST00000246801|TSKS	ENSG00000126467|ENST00000246801|TSKS	ENSG00000126467|ENST00000246801|TSKS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.316650390625	2	545.316763	1088.61897	-0.30292	-0.00016519	0.10816	5.8979E-05	-0.19476	-0.00010621	545.3167095799049	89.19	3.4736	89.053	88.19	91.664	-0.13761					279	82	4	0	0	0	1.0616	1	10824	10824		37.812	1.3648	1	17068000			87237	4202	60714	60814	96856	96856					0.07820799534761136
VRALCLLTSVC	11	Unmodified	_VRALCLLTSVC_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	REV__nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	589.343017578125	2	589.325219	1176.63589	-1.2647	-0.00074534	1.1111	0.0006548	-0.15365	-9.0549E-05	589.3262412928664	93.407	0.25491	93.407	93.303	93.558	0					6	5	2	0	0	0	0.024756	1	11852	11852		52.937	25.889	1	31236	+		87238	24045	60715	60815	96857	96857					0.05463260824694771
VRALREPERI	10	Unmodified	_VRALREPERI_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8690795898438	2	619.870028	1237.7255	-0.39229	-0.00024317	-0.62947	-0.00039019	-1.0218	-0.00063336	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.1246	1	11945	11945		23.523	0	1	4658300			87239	10347	60716	60816	96858	96858					0.11614974819917734
VRALREPERI	10	Unmodified	_VRALREPERI_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8695068359375	2	619.870028	1237.7255	-1.0156	-0.00062956	0.033515	2.0775E-05	-0.98212	-0.00060879	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.118	1	11934	11934		30.318	1.1682	1	4459000			87240	10347	60716	60816	96859	96859					0.11614974819917734
VRALSARN	8	Unmodified	_VRALSARN_					0	0	0		ENST00000545128.5_1_9:78505928-78547329:+|nuORF	ENST00000545128.5_1_9:78505928-78547329:+|nuORF	ENST00000545128.5_1_9:78505928-78547329:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	443.7646484375	2	443.764501	885.514448	0.12053	5.3487E-05	-0.029402	-1.3048E-05	0.091129	4.044E-05	443.76444607559887	78.654	3.0913	78.399	77.578	80.67	-0.25471					182	73	3	0	0	0	1.0009	1	9568	9568		37.159	1.9584	1	709500			87241	16490	60717	60817	96860	96860					0.0671114256869032
VRALSQLGSA	10	Unmodified	_VRALSQLGSA_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.2912902832031	2	501.290548	1000.56654	-0.38963	-0.00019532	-0.25636	-0.00012851	-0.64599	-0.00032383	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	1.1088	1	10714	10714		31.53	1.0262	1	8504000			87242	4042	60718	60818	96861	96861					0.06628261191792717
VRALSQLGSA	10	Unmodified	_VRALSQLGSA_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.290283203125	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.1265	1	10278	10278		24.519	2.5593	1	10074000			87243	4042	60718	60818	96862	96862					0.06628261191792717
VRALYDYAGQ	10	Unmodified	_VRALYDYAGQ_					0	0	0		ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	ENSG00000165912|ENST00000298838|PACSIN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	579.2894287109375	2	578.293288	1154.57202	0.61096	0.00035331	3.635	0.0021021	4.246	0.0024554	578.2953950662627	79.633	0.54218	79.387	79.112	79.654	-0.2465					18	12	2	0	0	0	0.03519	1	9483	9483		29.17	5.6474	1	397030			87244	7482	60719	60819	96863	96863					0.0009193998362206912
VRAMPPPGL	9	Unmodified	_VRAMPPPGL_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.27984619140625	2	469.26803	936.521507	0.31475	0.0001477	0.98377	0.00046165	1.2985	0.00060935	469.2681968861261	93.876	1.144	93.876	93.429	94.573	0					72	27	4	0	0	0	0.024386	1	11934	11934		25.45	0	1	570150			87245	18550	60720	60820	96864	96864					0.05070739124926149
VRAMPPPGL	9	Unmodified	_VRAMPPPGL_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	469.26803	936.521507	-0.94273	-0.00044239	1.8157	0.00085205	0.87297	0.00040966	469.2688872588495	93.719	0.47829	93.579	93.309	93.788	-0.13995	-0.14583	0.00069751	NaN	25.45	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149750			87246	18550	60720	60820							0.05070739124926149
VRAMPPPGL	9	Unmodified	_VRAMPPPGL_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	469.26803	936.521507	0.35418	0.00016621	0.83826	0.00039337	1.1924	0.00055957	469.26839569042437	93.695	0.43179	93.573	93.366	93.798	-0.12215	-0.15243	-0.00021986	NaN	25.45	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149660			87247	18550	60720	60820							0.05070739124926149
VRAMPPPGL	9	Unmodified	_VRAMPPPGL_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	469.26803	936.521507	-0.33552	-0.00015745	1.3691	0.0006425	1.0336	0.00048505	469.26870215259424	93.777	0.38998	93.63	93.435	93.825	-0.14771	-0.095495	0.0002784	NaN	25.45	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183380			87248	18550	60720	60820							0.05070739124926149
VRAPEVPVI	9	Unmodified	_VRAPEVPVI_					0	0	0		ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.3005065917969	2	490.300384	978.586216	-0.54209	-0.00026579	1.8459	0.00090504	1.3038	0.00063926	490.30116129069023	66.739	0.75324	66.767	66.521	67.274	0.027969					34	17	3	0	0	0	0.29158	1	7869	7869		76.774	7.9873	1	905010			87249	6428	60721	60821	96865	96865					0.09606637202557522
VRAPGSGSV	9	Unmodified	_VRAPGSGSV_					0	0	0			REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.23028564453125	2	415.229959	828.445365	-0.70861	-0.00029424	1.3092	0.00054363	0.60062	0.00024939	415.2304536137576	26.789	1.0297	26.87	26.29	27.319	0.081293					54	25	3	0	0	0	0.16468	1	1339	1339		96.19	8.494	1	2418300	+		87250	31284	60722	60822	96866	96866					0.024280585491396778
VRAPGSGSV	9	Unmodified	_VRAPGSGSV_					0	0	0			REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	415.229959	828.445365	-0.70861	-0.00029424	1.3092	0.00054363	0.60062	0.00024939	415.2304536137576	26.789	1.0297	26.87	26.29	27.319	0.081293	-0.12506	0.00056035	NaN	96.19	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2418300	+		87251	31284	60722	60822							0.024280585491396778
VRAPRVGG	8	Unmodified	_VRAPRVGG_					0	0	0		ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	406.2484436035156	2	406.248486	810.48242	2.218	0.00090104	-1.758	-0.0007142	0.45992	0.00018684	406.24765694064956	110.2	0.65084	110.2	109.96	110.61	0					31	17	3	0	0	0	1.0572	1	14008	14008		28.254	7.7724	1	239410			87252	11789	60723	60823	96867	96867					0.06959774885569914
VRARHELPVG	10	Unmodified	_VRARHELPVG_					0	0	0			REV__ENSG00000139835|ENST00000375431|GRTP1	REV__ENSG00000139835|ENST00000375431|GRTP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3299560546875	2	567.330539	1132.64652	-0.10765	-6.1074E-05	-1.2583	-0.00071388	-1.366	-0.00077496	567.3297064688651	89.127	1.6054	88.999	88.322	89.927	-0.12774					136	37	5	0	0	0	1.1267	1	10869	10869		29.15	2.4566	1	5896300	+		87253	23966	60724	60824	96868	96868					0.08550747585650242
VRARTVAGYGK	11	Unmodified	_VRARTVAGYGK_					0	0	0		nc|ENSG00000154928|P54762-5|EPHB1;ENSG00000154928|ENST00000398015|EPHB1;EPHB1|p.T584Kfs*8|1|0.08|ENSG00000154928|chr3:135166998-135166998|C/-|frameshift_variant	nc|ENSG00000154928|P54762-5|EPHB1	nc|ENSG00000154928|P54762-5|EPHB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428955078125	2	589.343646	1176.67274	-0.33817	-0.0001993	-1.0615	-0.00062561	-1.3997	-0.0008249	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0429	1	10988	10988		27.047	1.4733	1	6196800			87254	6443	60725	60825	96869	96869					0.09147016757128767
VRASFILEK	9	Unmodified	_VRASFILEK_					0	0	0			REV__nc|ENSG00000148090|Q13825-2|AUH	REV__nc|ENSG00000148090|Q13825-2|AUH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.817138671875	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.74711	2	10799	10571;10799		42.864	3.6114	1	4853400	+		87255	24593	60726	60826	96870;96871	96871					0.09498308748334239
VRASKDLLHR	10	Unmodified	_VRASKDLLHR_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8561401367188	2	597.856921	1193.69929	-1.0361	-0.00061944	-0.20101	-0.00012018	-1.2371	-0.00073961	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.0719	1	11823	11823		36.447	9.3994	1	4942300			87256	774	60727	60827	96872	96872					0.11018705648439209
VRASKDLLHR	10	Unmodified	_VRASKDLLHR_					0	0	0		MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant;nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.856689453125	2	597.856921	1193.69929	-1.8915	-0.0011309	0.64101	0.00038323	-1.2505	-0.00074764	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	1.1088	1	11536	11536		31.53	0	1	5655800			87257	774	60727	60827	96873	96873					0.11018705648439209
VRASQKRLR	9	Unmodified	_VRASQKRLR_					0	0	0		ENST00000520006.1_1_5:151152024-151152129:+|nuORF	ENST00000520006.1_1_5:151152024-151152129:+|nuORF	ENST00000520006.1_1_5:151152024-151152129:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2908325195312	2	557.351806	1112.68906	-0.0087811	-4.8941E-06	2.299	0.0012814	2.2903	0.0012765	557.3529611740657	32.019	0.55739	31.782	31.529	32.086	-0.23666					26	12	3	0	0	0	0.024541	1	2210	2210		23.042	12.777	1	273820			87258	15968	60728	60828	96874	96874					0.13722142713891117
VRASQKRLR	9	Unmodified	_VRASQKRLR_					0	0	0		ENST00000520006.1_1_5:151152024-151152129:+|nuORF	ENST00000520006.1_1_5:151152024-151152129:+|nuORF	ENST00000520006.1_1_5:151152024-151152129:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	557.351806	1112.68906	0.10514	5.8599E-05	2.2841	0.0012731	2.3893	0.0013317	557.3529191490385	31.997	0.60526	31.804	31.512	32.118	-0.19261	-0.022711	-0.00011288	NaN	10.866	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272270			87259	15968	60728	60828							0.13722142713891117
VRASWPRPLL	10	Unmodified	_VRASWPRPLL_					0	0	0		ENST00000566034.1_1_16:1033566-1035383:+|nuORF	ENST00000566034.1_1_16:1033566-1035383:+|nuORF	ENST00000566034.1_1_16:1033566-1035383:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.8565673828125	2	597.858932	1193.70331	-1.8915	-0.0011309	-2.7233	-0.0016281	-4.6148	-0.002759	597.857129672257	92.729	2.8405	92.586	91.704	94.545	-0.14356					281	66	5	0	0	0	0.98754	1	11426	11426		47.657	4.7931	1	5655800			87260	16934	60729	60829	96875	96875					0.11420795142180395
VRATVRAAS	9	Unmodified	_VRATVRAAS_					0	0	0			REV__ENSG00000140274|ENST00000323030|DUOXA2	REV__ENSG00000140274|ENST00000323030|DUOXA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7770080566406	2	465.777608	929.540663	0.30012	0.00013979	-0.38376	-0.00017875	-0.083645	-3.896E-05	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.93097	1	9798	9798		30.318	1.1682	1	1281300	+		87261	23996	60730	60830	96876	96876					0.07307411740168845
VRAYTTGSP	9	Unmodified	_VRAYTTGSP_					0	0	0		ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1;ENST00000569474.5_1_16:67573772-67574407:+|nuORF	ENSG00000039523|ENST00000042381|RIPOR1	ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2264709472656	2	476.248349	950.482145	-0.32629	-0.00015539	1.0782	0.00051349	0.7519	0.00035809	476.24931390887235	34.906	0.52515	34.884	34.634	35.159	-0.021763					31	13	3	0	0	0	0.024209	1	2609	2609		39.253	0	1	337580			87262	1061	60731	60831	96877	96877					0.004923103750456903
VRCCVNPFL	9	Unmodified	_VRCCVNPFL_					0	0	0		ENSG00000126353|ENST00000246657|CCR7	ENSG00000126353|ENST00000246657|CCR7	ENSG00000126353|ENST00000246657|CCR7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.272216796875	2	525.764797	1049.51504	-0.4923	-0.00025884	-0.037104	-1.9508E-05	-0.52941	-0.00027834	525.7642827880195	39.502	0.80273	39.502	39.112	39.915	0					56	22	4	0	0	0	0.024354	1	3379	3379		57.811	23.639	1	1808100			87263	4196	60732	60832	96878	96878					-0.00773522098097601
VRCQQLHEEP	10	Unmodified	_VRCQQLHEEP_					0	0	0			REV__nc|ENSG00000185621|Q96KR4-2|LMLN	REV__nc|ENSG00000185621|Q96KR4-2|LMLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.24053955078125	3	413.536395	1237.58736	-1.0187	-0.00042128	-0.33035	-0.00013661	-1.3491	-0.00055789	413.8708019358425	33.664	0.8274	33.498	33.117	33.944	-0.16565					25	20	2	0	0	0	0.03519	1	2453	2453		22.58	5.8623	1	338750	+		87264	27775	60733	60833	96879	96879					-0.021935164908427396
VRCRGIPR	8	Unmodified	_VRCRGIPR_					0	0	0		ENSG00000160602|ENST00000268766|NEK8;ENST00000543014.1_1_17:27064636-27069002:+|nuORF	ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	478.3008117675781	2	478.78217	955.549788	0.14419	6.9036E-05	0.11853	5.6751E-05	0.26272	0.00012579	478.7820638890524	65.274	0.47456	65.274	65.055	65.529	0					17	13	2	0	0	0	0.027866	1	7754	7754		30.504	6.3009	1	437350			87265	6826	60734	60834	96880	96880					0.07023481824876399
VRCTHKLL	8	Unmodified	_VRCTHKLL_					0	0	0			REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	REV__nc|ENSG00000185634|Q6S5L8-2|SHC4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	485.3118591308594	2	485.286754	968.558955	-1.1565	-0.00056122	-0.14242	-6.9112E-05	-1.2989	-0.00063033	485.28638403999577	43.967	0.90328	43.967	43.548	44.451	0					37	25	2	0	0	0	0.027866	1	4166	4166		50.025	5.4935	1	1362200	+		87266	27778	60735	60835	96881	96881					0.07341830390521409
VRCVACCRVL	10	3 Carbamidomethyl (C)	_VRC(Carbamidomethyl (C))VAC(Carbamidomethyl (C))C(Carbamidomethyl (C))RVL_	VRC(1)VAC(1)C(1)RVL		VRC(51)VAC(51)C(51)RVL		0	3	0		ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	ENSG00000172538|ENST00000311787|FAM170B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	431.5510559082031	3	431.550993	1291.63115	-0.14477	-6.2477E-05	-0.039413	-1.7009E-05	-0.18419	-7.9485E-05	431.5510240891068	36.474	2.1107	36.512	35.61	37.721	0.038044					163	56	6	0	0	0	0.94316	1	2830	2830		51.193	12.439	1	15354000			87267	8289	60736	60836	96882	96882	100;101;102				-0.00299946589711908
VRDARLRFG	9	Unmodified	_VRDARLRFG_					0	0	0			REV__ENSG00000167992|ENST00000335613|VWCE	REV__ENSG00000167992|ENST00000335613|VWCE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.316650390625	2	545.317432	1088.62031	-0.23183	-0.00012642	-1.2024	-0.00065567	-1.4342	-0.00078209	545.3166759018817	89.064	3.2148	89.042	88.056	91.271	-0.021645					281	76	4	0	0	0	0.85329	1	11145	11145		35.618	5.1146	1	11601000	+		87268	26210	60737	60837	96883	96883					0.07954478414171717
VRDDPVLRRL	10	Unmodified	_VRDDPVLRRL_					0	0	0		ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8695068359375	2	619.870028	1237.7255	0.0094929	5.8843E-06	-0.9607	-0.00059551	-0.95121	-0.00058963	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	1.0719	2	11892	11892;12097		36.447	2.3088	1	4373200			87269	4012	60738	60838	96884;96885	96884					0.11614974819940471
VRDERKFN	8	Unmodified	_VRDERKFN_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.2885131835938	2	532.285797	1062.55704	-0.59083	-0.00031449	4.2763	0.0022762	3.6854	0.0019617	532.2869909637603	85.717	0.96869	85.659	85.355	86.324	-0.057617					56	22	4	0	0	0	0.87148	1	10741	10741		53.351	2.016	1	650800	+		87270	23178	60739	60839	96886	96886					0.02826492906274325
VRDIKNER	8	Unmodified	_VRDIKNER_					0	0	0		ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.8050537109375	2	515.293622	1028.57269	-0.50576	-0.00026061	3.1494	0.0016229	2.6436	0.0013622	515.7989502482957	56.286	0.53584	56.286	55.999	56.535	0					22	14	2	0	0	0	0.027866	1	6298	6298		42.396	1.8235	1	201500			87271	3986	60740	60840	96887	96887					0.05954779423313994
VRDIKVREN	9	Unmodified	_VRDIKVREN_					0	0	0		ENSG00000206384|ENST00000358511|COL6A6;COL6A6|p.R1810Sfs*88|1|0.35|ENSG00000206384|chr3:130649258-130649258|G/-|frameshift_variant	ENSG00000206384|ENST00000358511|COL6A6	ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.8276977539062	2	564.827829	1127.64111	-0.31212	-0.00017629	-0.026816	-1.5147E-05	-0.33893	-0.00019144	564.8277176479559	31.051	0.70858	30.899	30.597	31.305	-0.15231					49	17	4	0	0	0	0.72875	1	2009	2009		44.117	6.3053	1	1539400			87272	10468	60741	60841	96888	96888					0.08239024003182749
VRDKGYDSV	9	Unmodified	_VRDKGYDSV_					0	0	0			REV__ENST00000495736.1_1_7:129986419-130007427:+|nuORF	REV__ENST00000495736.1_1_7:129986419-130007427:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	519.7798461914062	2	519.764363	1037.51417	-0.0076684	-3.9857E-06	-2.0268	-0.0010535	-2.0345	-0.0010574	519.7641823981876	86.047	1.2555	85.852	85.469	86.724	-0.19508					41	28	2	0	0	0	0.024477	1	10457	10457		27.882	0	1	74501	+		87273	25202	60742	60842	96889	96889					-0.0030832194181584782
VRDKLLTSN	9	Unmodified	_VRDKLLTSN_					0	0	0			REV__ENSG00000153283|ENST00000352690|CD96	REV__ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.303466796875	2	523.303655	1044.59276	-0.39587	-0.00020716	-0.06527	-3.4156E-05	-0.46114	-0.00024131	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.87448	1	10603	10603		34.173	0	1	14072000	+		87274	24897	60743	60843	96890	96890					0.07224530363305348
VRDKLLTSN	9	Unmodified	_VRDKLLTSN_					0	0	0			REV__ENSG00000153283|ENST00000352690|CD96	REV__ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3037109375	2	523.303655	1044.59276	0.47324	0.00024765	-0.96385	-0.00050438	-0.49061	-0.00025674	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.91321	1	10885	10885		31.53	1.0262	1	13836000	+		87275	24897	60743	60843	96891	96891					0.07224530363305348
VRDKLLTSN	9	Unmodified	_VRDKLLTSN_					0	0	0			REV__ENSG00000153283|ENST00000352690|CD96	REV__ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.303466796875	2	523.303655	1044.59276	0.14525	7.6008E-05	-0.72264	-0.00037816	-0.57739	-0.00030215	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.84115	1	10818	10818		36.447	0.82846	1	14210000	+		87276	24897	60743	60843	96892	96892					0.07224530363305348
VRDKLVASN	9	Unmodified	_VRDKLVASN_					0	0	0			REV__ENSG00000169607|ENST00000302450|CKAP2L	REV__ENSG00000169607|ENST00000302450|CKAP2L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903137207031	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.67687	1	10446	10446		47.657	0	1	10074000	+		87277	26384	60744	60844	96893	96893					0.06628261191804086
VRDLCLVL	8	Unmodified	_VRDLCLVL_					0	0	0		CON__P02672	CON__P02672	CON__P02672	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.77740478515625	2	465.775688	929.536823	0.37671	0.00017546	3.7484	0.0017459	4.1251	0.0019214	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.0106	1	9935	9935		35.618	2.1027	1	1283800		+	87278	506	60745	60845	96894	96894					0.06923605922111165
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.32958984375	2	567.330539	1132.64652	-1.643	-0.00093215	0.013669	7.7548E-06	-1.6294	-0.00092439	567.3304899087653	90.797	3.4536	90.797	89.975	93.429	0					339	82	6	0	0	0	0.87448	1	11612	11612		34.173	0.25091	1	14057000	+		87279	28676	60746	60846	96895	96895					0.08550747585650242
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3292846679688	2	567.330539	1132.64652	-0.4315	-0.0002448	-1.2034	-0.00068272	-1.6349	-0.00092753	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	0.96322	3	11427	11427;11475;11535		27.882	3.6504	1	13648000	+		87280	28676	60746	60846	96896;96897;96898	96896					0.08550747585650242
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.330078125	2	567.330539	1132.64652	-0.43786	-0.00024841	-0.88397	-0.0005015	-1.3218	-0.00074991	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	0.72875	2	11287	11236;11287		44.117	4.864	1	4134200	+		87281	28676	60746	60846	96899;96900	96900					0.08550747585650242
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3292846679688	2	567.330539	1132.64652	-0.48805	-0.00027688	-1.1487	-0.00065168	-1.6367	-0.00092857	567.3298567052711	90.877	3.4765	90.888	89.962	93.438	0.011276					355	83	5	0	0	0	0.80003	3	11617	11476;11617;11695		39.253	6.4404	1	14972000	+		87282	28676	60746	60846	96901;96902;96903	96902					0.08550747585650242
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	567.330539	1132.64652	-1.2298	-0.00069771	-0.35483	-0.00020131	-1.5846	-0.00089901	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	0.89441	2	11113	11113;11173		32.812	1.1781	1	17705000	+		87283	28676	60746	60846	96904;96905	96904					0.08550747585650242
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.330539	1132.64652	-0.39327	-0.00022312	-1.1254	-0.00063845	-1.5186	-0.00086157	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	0.85329	1	11307	11307		35.618	1.6967	1	19210000	+		87284	28676	60746	60846	96906	96906					0.08550747585650242
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.32958984375	2	567.330539	1132.64652	0.22871	0.00012975	-1.9167	-0.0010874	-1.688	-0.00095763	567.3293681925318	90.963	3.7399	90.824	89.747	93.487	-0.13942					340	88	5	0	0	0	0.85329	5	11220	11100;11112;11136;11220;11280		35.618	4.0885	1	18337000	+		87285	28676	60746	60846	96907;96908;96909;96910;96911	96910					0.08550747585650242
VRDNSGVLI	9	Unmodified	_VRDNSGVLI_					0	0	0			REV__nc|ENSG00000147573|Q9BYV6-4|TRIM55	REV__nc|ENSG00000147573|Q9BYV6-4|TRIM55	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.3160095214844	2	486.777274	971.539994	-1.023	-0.00049797	1.6985	0.00082677	0.67545	0.00032879	486.7777015553995	39.492	0.38444	39.393	39.269	39.653	-0.098755					15	10	2	0	0	0	0.024374	1	3382	3382		40.778	16.575	1	130170	+		87286	24565	60747	60847	96912	96912					0.05308572300486958
VRDRIEGL	8	Unmodified	_VRDRIEGL_					0	0	0		ENST00000289371.10_1_2:99953860-99976710:+|nuORF	ENST00000289371.10_1_2:99953860-99976710:+|nuORF	ENST00000289371.10_1_2:99953860-99976710:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2807922363281	2	479.277441	956.540328	-0.71663	-0.00034346	3.8434	0.0018421	3.1268	0.0014986	479.2799764755381	80.941	2.5403	80.965	79.605	82.145	0.023911					119	61	4	0	0	0	0.77775	1	10064	10064		60.972	2.742	1	1543800			87287	11777	60748	60848	96913	96913					0.06031992020336929
VRDRIEGL	8	Unmodified	_VRDRIEGL_					0	0	0		ENST00000289371.10_1_2:99953860-99976710:+|nuORF	ENST00000289371.10_1_2:99953860-99976710:+|nuORF	ENST00000289371.10_1_2:99953860-99976710:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2774963378906	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	1.0009	1	10282	10282		37.159	1.5408	1	4947400			87288	11777	60748	60848	96914	96914					0.06031992020336929
VRDRIEGL	8	Unmodified	_VRDRIEGL_					0	0	0		ENST00000289371.10_1_2:99953860-99976710:+|nuORF	ENST00000289371.10_1_2:99953860-99976710:+|nuORF	ENST00000289371.10_1_2:99953860-99976710:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27752685546875	2	479.277441	956.540328	0.63902	0.00030627	-0.86315	-0.00041369	-0.22414	-0.00010742	479.2771210125938	81.156	2.9484	80.92	79.122	82.071	-0.23574					188	70	3	0	0	0	1.0009	1	9765	9765		37.159	1.5408	1	2107600			87289	11777	60748	60848	96915	96915					0.06031992020336929
VRDRPVLQ	8	Unmodified	_VRDRPVLQ_					0	0	0		ENST00000341356.9_1_11:67207296-67207603:-|nuORF	ENST00000341356.9_1_11:67207296-67207603:-|nuORF	ENST00000341356.9_1_11:67207296-67207603:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	492.7880859375	2	491.793258	981.571963	-0.44417	-0.00021844	0.23489	0.00011552	-0.20928	-0.00010292	491.79278847329323	21.026	0.48246	20.936	20.675	21.158	-0.090092					12	9	2	0	0	0	0.027866	1	568	568		44.117	5.3107	1	27021			87290	12492	60749	60849	96916	96916					0.08043984774269575
VRDRSFIY	8	Unmodified	_VRDRSFIY_					0	0	0			REV__AluSx_dup100421|chr17:75147717-75148024:+|1.3964843871730233|0.0059828671783624|7.87|522.0|21|3|anti-sense	REV__AluSx_dup100421|chr17:75147717-75148024:+|1.3964843871730233|0.0059828671783624|7.87|522.0|21|3|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.28955078125	2	528.285266	1054.55598	-0.5396	-0.00028506	0.2919	0.00015421	-0.2477	-0.00013085	528.2852709098423	35.707	0.59618	35.494	35.154	35.75	-0.21246					49	15	5	0	0	0	0.93274	1	2719	2719		47.916	0	1	2227000	+		87291	19122	60750	60850	96917	96917					0.0308827853737057
VRDWHSRA	8	Unmodified	_VRDWHSRA_					0	0	0			REV__ENST00000156825.5_1_19:1577157-1577418:-|nuORF	REV__ENST00000156825.5_1_19:1577157-1577418:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.310791015625	2	513.765032	1025.51551	-1.0386	-0.00053362	4.151	0.0021327	3.1124	0.001599	513.7670313277679	65.283	1.6191	65.01	64.562	66.181	-0.27282					118	43	3	0	0	0	0.027866	1	7692	7692		68.787	12.066	1	5396400	+		87292	29269	60751	60851	96918	96918					0.0037735693761078437
VREMNGVL	8	Unmodified	_VREMNGVL_					0	0	0		nc|ENSG00000103150|O95822-2|MLYCD;ENSG00000103150|ENST00000262430|MLYCD	nc|ENSG00000103150|O95822-2|MLYCD	nc|ENSG00000103150|O95822-2|MLYCD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2473449707031	2	459.247295	916.480036	0.26226	0.00012044	-0.6326	-0.00029052	-0.37034	-0.00017008	459.2469119549165	43.834	0.64527	43.865	43.558	44.203	0.030827					32	17	2	0	0	0	0.6536	1	4074	4074		71.296	9.1883	1	3841600			87293	2473	60752	60852	96919	96919					0.01845558365607758
VRERKSSI	8	Unmodified	_VRERKSSI_					0	0	0			REV__ENSG00000137100|ENST00000259632|DCTN3	REV__ENSG00000137100|ENST00000259632|DCTN3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.7908630371094	2	487.790715	973.566878	0.29152	0.0001422	-0.5178	-0.00025258	-0.22629	-0.00011038	487.790393606571	83.068	2.9253	82.978	82.022	84.948	-0.090454					216	68	4	0	0	0	0.95679	1	10451	10451		44.117	3.3386	1	2091900	+		87294	23727	60753	60853	96920	96920					0.07903680911670108
VRERPVVI	8	Unmodified	_VRERPVVI_					0	0	0		ENST00000586869.5_1_17:33458867-33458993:-|nuORF	ENST00000586869.5_1_17:33458867-33458993:-|nuORF	ENST00000586869.5_1_17:33458867-33458993:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.79022216796875	2	484.306001	966.597449	-0.14027	-6.7935E-05	-1.8442	-0.00089314	-1.9844	-0.00096108	484.3048312586707	45.824	0.44416	45.824	45.646	46.09	0					16	12	2	0	0	0	0.027866	1	4521	4521		44.117	5.3107	1	189340			87295	17255	60754	60854	96921	96921					0.11281459296708363
VREYTVGGI	9	Unmodified	_VREYTVGGI_					0	0	0			REV__ENST00000521362.1_1_5:159659088-159665663:+|nuORF	REV__ENST00000521362.1_1_5:159659088-159665663:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2717590332031	2	497.271824	992.529095	0.33768	0.00016792	0.26862	0.00013358	0.6063	0.0003015	497.2720213084273	89.52	1.2819	89.498	89.115	90.397	-0.021645					92	30	6	0	0	0	0.6504	1	11256	11256		49.442	1.5259	1	1256900	+		87296	26445	60755	60855	96922	96922					0.03253169926199462
VRFGRSNVVLI	11	Unmodified	_VRFGRSNVVLI_					0	0	0			REV__ENST00000312239.9_1_1:21106965-21107016:-|nuORF	REV__ENST00000312239.9_1_1:21106965-21107016:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.53033447265625	3	420.59094	1258.75099	1.3244	0.00055705	1.6714	0.00070296	2.9958	0.00126	420.5909346118148	17.479	0.29848	17.325	17.159	17.458	-0.15403					10	5	3	0	0	0	0.024759	1	173	173		23.378	5.5448	1	19119	+		87297	30217	60756	60856	96923	96923					0.13196449342376582
VRFGRSNVVLI	11	Unmodified	_VRFGRSNVVLI_					0	0	0			REV__ENST00000312239.9_1_1:21106965-21107016:-|nuORF	REV__ENST00000312239.9_1_1:21106965-21107016:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	420.59094	1258.75099	-0.10012	-4.2107E-05	0.30803	0.00012955	0.20791	8.7446E-05	420.59165492130325	17.546	0.29855	17.339	17.116	17.414	-0.20669	0.0069627	-0.00081295	NaN	23.378	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21735	+		87298	30217	60756	60856							0.13196449342376582
VRFGTLRPP	9	Unmodified	_VRFGTLRPP_					0	0	0			REV__SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|2|1|sense	REV__SVA_D_dup237|chr2:206170981-206172592:-|2.1725213389572864|0.0730937711215957|4.89|503.0|2|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.8126220703125	2	521.811451	1041.60835	-0.13268	-6.9233E-05	2.6217	0.0013681	2.4891	0.0012988	521.8128118762803	41.489	1.2789	41.512	41.111	42.39	0.023006					85	36	4	0	0	0	0.83071	1	3714	3714		37.159	5.2042	1	16691000	+		87299	37621	60757	60857	96924	96924					0.0892086167098114
VRFHRAAA	8	Unmodified	_VRFHRAAA_					0	0	0			REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	REV__nc|ENSG00000132024|Q6P1N0-2|CC2D1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.2672424316406	2	464.26721	926.519868	0.83633	0.00038828	-2.2042	-0.0010233	-1.3679	-0.00063506	464.2660847026912	42.784	0.90475	42.81	42.393	43.298	0.026012					57	24	3	0	0	0	0.93274	1	3896	3896		47.916	3.7988	1	3667800	+		87300	23253	60758	60858	96925	96925					0.05366866151166505
VRFIFGLL	8	Unmodified	_VRFIFGLL_					0	0	0		ENST00000357006.8_1_18:5290207-5290390:-|nuORF	ENST00000357006.8_1_18:5290207-5290390:-|nuORF	ENST00000357006.8_1_18:5290207-5290390:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7770690917969	2	482.802563	963.590573	-0.94309	-0.00045533	-3.5392	-0.0017087	-4.4823	-0.0021641	482.80064666025567	44.893	0.7912	44.744	44.39	45.181	-0.1488					42	22	3	0	0	0	0.027866	1	4319	4319		28.254	0	1	556440			87301	12685	60759	60859	96926	96926					0.10732146416160049
VRFLVLWRERR	11	Unmodified	_VRFLVLWRERR_					0	0	0			REV__ENST00000461804.5_1_3:156877890-156877995:-|nuORF	REV__ENST00000461804.5_1_3:156877890-156877995:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7894592285156	3	510.644038	1528.91028	-1.0552	-0.00053885	-0.88743	-0.00045316	-1.9427	-0.00099201	510.64361148471005	85.734	0.16294	85.758	85.697	85.86	0.023666					5	3	2	0	0	0	0.024898	1	10696	10696		5.6988	0	1	31780	+		87302	32887	60760	60860	96927	96927					0.16698582690332842
VRFSPDCRAF	10	Unmodified	_VRFSPDCRAF_					0	0	0		ENST00000452475.5_1_7:72986280-72992879:-|nuORF;ENSG00000106638|ENST00000305632|TBL2	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	599.292724609375	2	599.295307	1196.57606	-1.311	-0.00078569	-4.0354	-0.0024184	-5.3464	-0.0032041	599.2928257523623	46.833	0.7742	46.833	46.587	47.361	0					50	20	4	0	0	0	0.88896	1	4655	4655		54.776	3.2486	1	2424600			87303	2806	60761	60861	96928	96928					-0.014362937943133147
VRFSPDCRAF	10	Unmodified	_VRFSPDCRAF_					0	0	0		ENST00000452475.5_1_7:72986280-72992879:-|nuORF;ENSG00000106638|ENST00000305632|TBL2	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	599.2922973632812	2	599.295307	1196.57606	-1.1918	-0.00071424	-3.9545	-0.0023699	-5.1463	-0.0030842	599.2927866983405	46.8	0.73088	46.851	46.544	47.275	0.051395					57	19	5	0	0	0	1.0508	1	4592	4592		39.253	2.8061	1	2463300			87304	2806	60761	60861	96929	96929					-0.014362937943133147
VRFWCTWWRGR	11	Unmodified	_VRFWCTWWRGR_					0	0	0			REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	REV__ENST00000563441.5_1_15:75651254-75660924:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2925415039062	3	518.26294	1551.76699	0.0352	1.8243E-05	0.16971	8.7952E-05	0.2049	0.00010619	518.2630294673161	55.104	0.43079	54.873	54.601	55.032	-0.23087					16	11	2	0	0	0	0.024792	1	5863	5863		13.508	0	1	288580	+		87305	35227	60762	60862	96930	96930					0.013178323075862863
VRFYWRRRRKV	11	Unmodified	_VRFYWRRRRKV_					0	0	0			REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	406.2488708496094	4	406.247018	1620.95897	0.17203	6.9888E-05	3.9484	0.001604	4.1204	0.0016739	406.2486217566342	87.93	2.3085	87.751	87.363	89.672	-0.17875					59	55	2	0	0	0	1.1135	7	10681	10681;10705;10717;10753;10777;10815;10847		1.4188	1.4188	1	91211000	+		87306	29292	60763	60863	96931;96932;96933;96934;96935;96936;96937	96931					0.17332496050062218
VRFYWRRRRKV	11	Unmodified	_VRFYWRRRRKV_					0	0	0			REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	406.2488708496094	4	406.247018	1620.95897	-0.071125	-2.8894E-05	3.9772	0.0016157	3.9061	0.0015868	406.24863586850125	87.901	2.2035	87.764	87.373	89.576	-0.13743					56	52	2	0	0	0	1.1135	7	10674	10662;10674;10686;10710;10734;10746;10796		0.37141	0.37141	1	67155000	+		87307	29292	60763	60863	96938;96939;96940;96941;96942;96943;96944	96939					0.17332496050062218
VRGAALKV	8	Unmodified	_VRGAALKV_					0	0	0		ENSG00000123815|ENST00000324464|COQ8B;ENST00000593544.1_1_19:41211221-41220985:-|nuORF;ENST00000596455.5_1_19:41211221-41221674:-|nuORF;ENST00000601451.5_1_19:41211221-41220537:-|nuORF;ADCK4|p.W283Lfs*4|1|0.35|ENSG00000123815|chr19:40702645-40702646|-/A|frameshift_variant	ENSG00000123815|ENST00000324464|COQ8B	ENSG00000123815|ENST00000324464|COQ8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.2687683105469	2	407.268887	812.523222	1.36	0.00055389	-1.3948	-0.00056806	-0.034803	-1.4174E-05	407.26818164475617	28.433	0.65846	28.514	28.248	28.907	0.080812					39	15	3	0	0	0	0.75307	2	1602	1602;1628		62.978	7.9948	1	1819500			87308	3999	60764	60864	96945;96946	96945					0.10946116205184353
VRGEYSDEL	9	Unmodified	_VRGEYSDEL_					0	0	0			REV__nc|ENSG00000151176|Q8NHP8-2|PLBD2	REV__nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.25341796875	2	534.253828	1066.4931	-0.31875	-0.0001703	-0.57965	-0.00030968	-0.89841	-0.00047998	534.2536031125229	106.45	0.78381	106.45	105.92	106.7	-0.0013123					37	25	3	0	0	0	0.31037	1	13616	13616		74.255	2.3776	1	301900	+		87309	24759	60765	60865	96947	96947					-0.0374833204132301
VRGFNRLSI	9	Unmodified	_VRGFNRLSI_					0	0	0			REV__ENSG00000142959|ENST00000372207|BEST4	REV__ENSG00000142959|ENST00000372207|BEST4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.295166015625	2	531.314358	1060.61416	-0.54704	-0.00029065	2.3882	0.0012689	1.8412	0.00097824	531.315486755386	101.03	1.3299	101.03	100.18	101.51	0					38	30	2	0	0	0	0.024025	1	12946	12946		52.937	0	1	228160	+		87310	24189	60766	60866	96948	96948					0.08627960182661809
VRGILPIVL	9	Unmodified	_VRGILPIVL_					0	0	0		ENST00000228506.7_1_12:121136080-121136296:+|nuORF	ENST00000228506.7_1_12:121136080-121136296:+|nuORF	ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.27783203125	2	490.33677	978.658987	-0.021617	-1.06E-05	0.12768	6.2606E-05	0.10606	5.2007E-05	490.3366640746114	76.365	0.72884	76.365	76.071	76.799	0					45	17	3	0	0	0	0.024381	1	9433	9433		45.952	0	1	507750			87311	11218	60767	60867	96949	96949					0.16880390995981998
VRGILPIVL	9	Unmodified	_VRGILPIVL_					0	0	0		ENST00000228506.7_1_12:121136080-121136296:+|nuORF	ENST00000228506.7_1_12:121136080-121136296:+|nuORF	ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	490.2768249511719	2	490.33677	978.658987	-0.52421	-0.00025704	0.76539	0.0003753	0.24117	0.00011826	490.3369865508544	76.487	0.87515	76.219	75.89	76.765	-0.26806					48	20	4	0	0	0	0.024405	1	9094	9094		27.882	0	1	925040			87312	11218	60767	60867	96950	96950					0.16880390995981998
VRGLKEGPLRN	11	Unmodified	_VRGLKEGPLRN_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8690185546875	2	619.870028	1237.7255	-0.39229	-0.00024317	-0.62947	-0.00039019	-1.0218	-0.00063336	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	1.0392	1	11921	11921		28.081	3.5623	1	4658300	+		87313	26419	60768	60868	96951	96951					0.11614974819940471
VRGNLSILAA	10	Unmodified	_VRGNLSILAA_					0	0	0		ENSG00000180090|ENST00000323404|OR3A1	ENSG00000180090|ENST00000323404|OR3A1	ENSG00000180090|ENST00000323404|OR3A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.30792236328125	2	507.308741	1012.60293	-0.8274	-0.00041975	-0.78171	-0.00039657	-1.6091	-0.00081632	507.3084751133819	43.57	1.8058	43.333	42.879	44.685	-0.23736					159	48	6	0	0	0	0.74632	1	4011	4011		64.207	0.901	1	107780000			87314	8959	60769	60869	96952	96952					0.0971313808852301
VRGPNRTP	8	Unmodified	_VRGPNRTP_					0	0	0			REV__ENST00000561252.1_1_15:90768241-90768761:+|nuORF	REV__ENST00000561252.1_1_15:90768241-90768761:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	448.75677490234375	2	448.756675	895.498798	0.18779	8.4271E-05	-0.15424	-6.9217E-05	0.033545	1.5053E-05	448.75645610556217	19.099	0.88495	18.98	18.61	19.495	-0.11872					33	17	3	0	0	0	1.0239	1	356	356		33.516	1.5607	1	202450	+		87315	35169	60770	60870	96953	96953					0.046868560516600155
VRGQPTLII	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VRGQPTLII_					1	0	0			REV__ENST00000498040.5_1_21:45148712-45148838:+|nuORF	REV__ENST00000498040.5_1_21:45148712-45148838:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8192138671875	2	519.818941	1037.62333	0.12518	6.5073E-05	-0.67539	-0.00035108	-0.55021	-0.00028601	519.8186456583804	71.282	0.99471	71.282	70.909	71.904	0					100	25	5	0	0	0	0.75397	1	8699	8699		42.396	6.7778	1	28736000	+		87316	33867	60771	60871	96954	96954					0.10602308748343603
VRGQQSAFA	9	Unmodified	_VRGQQSAFA_					0	0	0		ENST00000553407.5_1_12:121840574-121855729:+|nuORF;ENSG00000170633|ENST00000361234|RNF34;nc|ENSG00000170633|Q969K3-2|RNF34;ENST00000556562.1_1_12:121838015-121854228:+|nuORF	ENST00000553407.5_1_12:121840574-121855729:+|nuORF	ENST00000553407.5_1_12:121840574-121855729:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2546081542969	2	482.253966	962.493378	-0.61098	-0.00029465	1.8794	0.00090634	1.2684	0.0006117	482.25480944404757	30.739	1.8399	30.561	30.203	32.043	-0.17818					74	44	2	0	0	0	0.70186	1	1978	1978		45.952	10.751	1	2766200			87317	8063	60772	60872	96955	96955					0.010631324691757982
VRGQRHGMP	9	Unmodified	_VRGQRHGMP_					0	0	0			REV__ENST00000593642.5_1_19:59070568-59070676:+|nuORF	REV__ENST00000593642.5_1_19:59070568-59070676:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	518.27490234375	2	519.274709	1036.53487	-0.92962	-0.00048273	-2.9121	-0.0015122	-3.8418	-0.0019949	519.273395437555	62.329	0.17018	62.089	62.037	62.207	-0.23926					6	4	2	0	0	0	0.024535	1	7230	7230		18.324	0	1	1528100	+		87318	35767	60773	60873	96956	96956					0.0180598995686978
VRGSPLDDPPS	11	Unmodified	_VRGSPLDDPPS_					0	0	0			REV__MASP2|p.G367S|1|0.28|ENSG00000009724|chr1:11030871-11030871|C/T|missense_variant	REV__MASP2|p.G367S|1|0.28|ENSG00000009724|chr1:11030871-11030871|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.3111572265625	2	570.288202	1138.56185	-0.51155	-0.00029173	3.9687	0.0022633	3.4571	0.0019715	570.2900605222039	52.151	0.56395	52.032	51.758	52.322	-0.11876					23	14	3	0	0	0	0.024783	1	5398	5398		51.528	24.835	1	270660	+		87319	36356	60774	60874	96957	96957					-0.0018866774162233924
VRHLFEIV	8	Unmodified	_VRHLFEIV_					0	0	0			REV__nc|ENSG00000070718|P53677-2|AP3M2	REV__nc|ENSG00000070718|P53677-2|AP3M2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.2964782714844	2	506.800552	1011.58655	0.25759	0.00013055	-3.6445	-0.001847	-3.3869	-0.0017165	506.79885882414123	97.977	0.66935	97.987	97.728	98.397	0.010231					24	15	2	0	0	0	0.027866	1	12455	12455		26.796	12.132	1	117900	+		87320	20432	60775	60875	96958	96958					0.08122056922422871
VRHLLDNKPI	10	Unmodified	_VRHLLDNKPI_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	402.8614807128906	3	402.24354	1203.70879	0.84149	0.00033848	-0.55202	-0.00022205	0.28947	0.00011644	402.24309578796857	23.341	0.27592	23.341	23.206	23.482	0					9	6	2	0	0	0	0.03519	1	927	927		14.694	0	1	30715	+		87321	23569	60776	60876	96959	96959					0.11508473933986352
VRHMVTGL	8	Unmodified	_VRHMVTGL_					0	0	0			REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.7562255859375	2	456.75783	911.501106	-0.17889	-8.1711E-05	2.4797	0.0011326	2.3008	0.0010509	456.7606573673837	31.046	0.50976	31.058	30.831	31.34	0.011797					17	11	2	0	0	0	0.027866	1	2051	2051		37.028	0	1	67344	+		87322	24891	60777	60877	96960	96960					0.04181568465116925
VRHRAETT	8	Unmodified	_VRHRAETT_					0	0	0			REV__ENSG00000247626|ENST00000282276|MARS2	REV__ENSG00000247626|ENST00000282276|MARS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.26702880859375	2	485.264865	968.515176	0.53662	0.0002604	2.2983	0.0011153	2.8349	0.0013757	485.26586198921336	68.116	1.2034	67.878	67.549	68.753	-0.23814					77	29	5	0	0	0	1.0516	1	7886	7886		29.15	3.6994	1	4004400	+		87323	29008	60778	60878	96961	96961					0.029659372177434307
VRIAIKEI	8	Unmodified	_VRIAIKEI_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6;ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15;nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF	nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.80999755859375	2	471.310752	940.606951	0.3976	0.00018739	-0.1759	-8.2905E-05	0.2217	0.00010449	471.3103465351591	19.616	0.49213	19.455	19.233	19.725	-0.16079					21	9	4	0	0	0	0.027866	1	422	422		30.504	0	1	254810			87324	5587;9997;8999	60779	60879	96962	96962					0.13427227582246815
VRILFGRCV	9	Unmodified	_VRILFGRCV_					0	0	0			REV__MYH8|p.M800I|1|0.11|ENSG00000133020|chr17:10406073-10406073|C/G|missense_variant	REV__MYH8|p.M800I|1|0.11|ENSG00000133020|chr17:10406073-10406073|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8168334960938	2	531.815679	1061.6168	0.30294	0.00016111	1.6063	0.00085425	1.9092	0.0010154	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.98128	1	10806	10806		24.203	2.2429	1	3405600	+		87325	36410	60780	60880	96963	96963					0.08846092315957321
VRIPAKPPAAM	11	Unmodified	_VRIPAKPPAAM_					0	0	0			REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.843017578125	2	575.841894	1149.66923	-1.2575	-0.00072414	3.1191	0.0017961	1.8616	0.001072	575.843549013459	90.999	3.3943	90.844	89.944	93.338	-0.1552					284	80	5	0	0	0	1.0442	1	11084	11084		26.693	0.62953	1	6251500	+		87326	27709	60781	60881	96964	96964					0.10038630658914371
VRIPAKPPAAM	11	Unmodified	_VRIPAKPPAAM_					0	0	0			REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.843505859375	2	575.841894	1149.66923	-0.77613	-0.00044693	2.6848	0.001546	1.9087	0.0010991	575.8433005579859	91.03	3.477	90.906	89.932	93.409	-0.12341					305	82	5	0	0	0	1.0442	1	11182	11182		26.693	2.1737	1	6382400	+		87327	27709	60781	60881	96965	96965					0.10038630658914371
VRISHLGPL	9	Unmodified	_VRISHLGPL_					0	0	0			REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	496.3037109375	2	496.306001	990.597449	-0.22693	-0.00011263	-3.7596	-0.0018659	-3.9865	-0.0019785	496.3039200433651	83.176	1.8457	83.037	82.348	84.194	-0.1386					80	42	3	0	0	0	0.97516	1	9999	9999		25.45	4.5032	1	209550	+		87328	34469	60782	60882	96966	96966					0.10177459296698999
VRISHLGPL	9	Unmodified	_VRISHLGPL_					0	0	0			REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.306001	990.597449	-0.041474	-2.0584E-05	-4.2389	-0.0021038	-4.2804	-0.0021244	496.30390888839446	82.676	1.2832	82.676	82.279	83.562	0	-0.23051	9.6261E-05	NaN	25.45	55	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255750	+		87329	34469	60782	60882							0.10177459296698999
VRISHLGPL	9	Unmodified	_VRISHLGPL_					0	0	0			REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.306001	990.597449	1.0886	0.00054028	-5.3649	-0.0026626	-4.2763	-0.0021224	496.30335150259447	83.104	1.1969	83.014	82.313	83.51	-0.090454	0.10752	-0.0010215	NaN	25.45	51	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258670	+		87330	34469	60782	60882							0.10177459296698999
VRISHLGPL	9	Unmodified	_VRISHLGPL_					0	0	0			REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	496.306001	990.597449	-0.46895	-0.00023274	-3.727	-0.0018497	-4.196	-0.0020825	496.3041471037403	82.784	1.322	82.811	82.19	83.512	0.026558	-0.095655	0.00060436	NaN	25.45	53	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224940	+		87331	34469	60782	60882							0.10177459296698999
VRISHLGPL	9	Unmodified	_VRISHLGPL_					0	0	0			REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	REV__ENST00000527146.1_2_11:308398-308780:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	496.306001	990.597449	-0.22693	-0.00011263	-3.7596	-0.0018659	-3.9865	-0.0019785	496.3039200433651	83.176	1.8457	83.037	82.348	84.194	-0.1386	0.13079	0.00057199	NaN	25.45	80	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209550	+		87332	34469	60782	60882							0.10177459296698999
VRIYRMLSL	9	Unmodified	_VRIYRMLSL_					0	0	0			REV__ENST00000370238.7_1_1:94354044-94354092:-|nuORF	REV__ENST00000370238.7_1_1:94354044-94354092:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.843017578125	2	575.841894	1149.66923	0.50468	0.00029062	1.473	0.00084821	1.9777	0.0011388	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.92825	1	11143	11143		30.504	1.3541	1	1452500	+		87333	31118	60783	60883	96967	96967					0.10038630658937109
VRKEALLL	8	Unmodified	_VRKEALLL_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000601764.5_1_19:4697564-4723732:-|nuORF;ENST00000597145.5_1_19:4685559-4714096:-|nuORF	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	471.3106689453125	2	471.310752	940.606951	-0.11805	-5.5637E-05	-0.28636	-0.00013496	-0.4044	-0.0001906	471.3105974486802	48.537	1.5779	48.384	48.092	49.669	-0.15277					99	43	4	0	0	0	0.50717	1	4967	4967		84.916	2.675	1	9454000			87334	5532	60784	60884	96968	96968					0.13427227582246815
VRKGPPRSPAV	11	Unmodified	_VRKGPPRSPAV_					0	0	0		ENST00000554614.2_1_14:73712316-73712565:-|nuORF	ENST00000554614.2_1_14:73712316-73712565:-|nuORF	ENST00000554614.2_1_14:73712316-73712565:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3534545898438	2	582.354014	1162.69348	-0.88276	-0.00051408	-0.059109	-3.4422E-05	-0.94187	-0.0005485	582.3538408674295	102.24	1.4134	102.24	101.94	103.36	0.0073471					111	33	7	0	0	0	1.0465	1	13082	13082		26.063	1.5442	1	7932900			87335	16661	60785	60885	96969	96969					0.1186360713677459
VRKGYRAVT	9	Unmodified	_VRKGYRAVT_					0	0	0		ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	ENSG00000095464|ENST00000371447|PDE6C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.7844848632812	2	525.314358	1048.61416	-1.0141	-0.0005327	3.5669	0.0018738	2.5529	0.0013411	525.3158638421879	65.044	0.40421	64.841	64.577	64.982	-0.20254					12	9	2	0	0	0	0.024539	1	7438	7438		27.882	18.699	1	66112			87336	2027	60786	60886	96970	96970					0.09179960182655122
VRKKKKKG	8	Unmodified	_VRKKKKKG_					0	0	0		ENST00000467670.1_1_1:84415538-84417603:-|nuORF;ENST00000488014.5_1_1:84403680-84417894:-|nuORF;nc|ENSG00000137941|Q6ZT98-2|TTLL7;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7	ENST00000467670.1_1_1:84415538-84417603:-|nuORF	ENST00000467670.1_1_1:84415538-84417603:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2904052734375	2	486.345461	970.676368	-0.49403	-0.00024027	3.9336	0.0019131	3.4396	0.0016728	486.3473476801276	27.54	0.21806	27.527	27.427	27.645	-0.012983					10	5	3	0	0	0	0.027866	1	1525	1525		12.959	8.6429	1	109870			87337	5176	60787	60887	96971	96971					0.1898573132166348
VRKLDLPVL	9	Unmodified	_VRKLDLPVL_					0	0	0		nc|ENSG00000140987|Q9NX65-3|ZSCAN32;nc|ENSG00000140987|Q9NX65-2|ZSCAN32;ENSG00000140987|ENST00000396852|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8450927734375	2	526.844959	1051.67537	-0.12097	-6.373E-05	-0.12087	-6.3682E-05	-0.24184	-0.00012741	526.8447218849889	55.662	1.1785	55.662	55.319	56.497	0					82	32	4	0	0	0	0.11092	3	6178	6153;6166;6178		108.09	36.792	1	3638000			87338	5458	60788	60888	96972;96973;96974	96974					0.1515947216207678
VRKLDLPVL	9	Unmodified	_VRKLDLPVL_					0	0	0		nc|ENSG00000140987|Q9NX65-3|ZSCAN32;nc|ENSG00000140987|Q9NX65-2|ZSCAN32;ENSG00000140987|ENST00000396852|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.8446655273438	2	526.844959	1051.67537	-0.35518	-0.00018713	0.018113	9.5426E-06	-0.33707	-0.00017758	526.8448196990865	55.76	1.3194	55.604	55.26	56.58	-0.15601					83	35	4	0	0	0	0.047345	3	6143	6143;6154;6167		129.68	47.442	1	3126400			87339	5458	60788	60888	96975;96976;96977	96975					0.1515947216207678
VRKLDLPVL	9	Unmodified	_VRKLDLPVL_					0	0	0		nc|ENSG00000140987|Q9NX65-3|ZSCAN32;nc|ENSG00000140987|Q9NX65-2|ZSCAN32;ENSG00000140987|ENST00000396852|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8447265625	2	526.844959	1051.67537	-0.75755	-0.00039911	-0.043961	-2.3161E-05	-0.80151	-0.00042227	526.8450186468152	55.518	1.1772	55.616	55.22	56.397	0.098015					94	29	5	0	0	0	0.082191	3	6048	6048;6059;6072		116.9	42.639	1	3488000			87340	5458	60788	60888	96978;96979;96980	96978					0.1515947216207678
VRKLVIVS	8	Unmodified	_VRKLVIVS_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.31317138671875	2	457.313295	912.612037	-1.0544	-0.00048217	0.46745	0.00021377	-0.58691	-0.0002684	457.3134766275095	44.501	1.4861	44.356	44.065	45.551	-0.14471					106	43	4	0	0	0	0.91239	1	4250	4250		50.025	0	1	12904000			87341	8343	60789	60889	96981	96981					0.1522353144484896
VRKLVIVS	8	Unmodified	_VRKLVIVS_					0	0	0		NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	NOC3L|p.P702Sfs*17|1|0.21|ENSG00000173145|chr10:94337862-94337863|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.313720703125	2	457.313295	912.612037	-0.018014	-8.2382E-06	-0.46122	-0.00021092	-0.47924	-0.00021916	457.313042497808	44.483	1.4308	44.52	44.142	45.573	0.0369					113	41	4	0	0	0	0.56067	2	4175	4175;4198		79.939	8.5613	1	14121000			87342	8343	60789	60889	96982;96983	96982					0.1522353144484896
VRKRFPQHTI	10	Unmodified	_VRKRFPQHTI_					0	0	0		ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.3757934570312	2	641.380563	1280.74657	-1.6167	-0.0010369	3.6728	0.0023557	2.0561	0.0013187	641.383806737699	105.79	0.54493	105.66	105.32	105.86	-0.12444					47	16	4	0	0	0	1.1162	1	13184	13184		19.104	0	1	170960			87343	2262	60790	60890	96984	96984					0.11742984919465016
VRKRRWLKCNN	11	Unmodified	_VRKRRWLKCNN_					0	0	0			REV__ENST00000552912.5_1_12:110618329-110628779:+|nuORF	REV__ENST00000552912.5_1_12:110618329-110628779:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	491.27685546875	3	491.617494	1471.83065	0.27922	0.00013727	-1.575	-0.0007743	-1.2958	-0.00063703	491.6165924778864	40.48	0.30621	40.48	40.281	40.587	0					13	8	2	0	0	0	0.024856	1	3531	3531		5.6988	0	1	112490	+		87344	34964	60791	60891	96985	96985					0.11361192744743676
VRKVKSAI	8	Unmodified	_VRKVKSAI_					0	0	0			REV__nc|ENSG00000139697|A3KN83-3|SBNO1	REV__nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.80328369140625	2	450.803094	899.591636	1.3606	0.00061338	-1.1977	-0.00053993	0.16294	7.3453E-05	450.8023329972208	19.487	0.93593	19.253	19.027	19.963	-0.23345					29	18	3	0	0	0	1.0572	1	406	406		28.254	1.4582	1	203910	+		87345	23960	60792	60892	96986	96986					0.13782360785035053
VRKVLQLLRLP	11	Unmodified	_VRKVLQLLRLP_					0	0	0		ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENST00000449200.1_1_22:40502501-40502987:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	445.6358337402344	3	445.638001	1333.89217	-0.52599	-0.0002344	-3.814	-0.0016997	-4.34	-0.0019341	445.6361772627151	40.212	1.7286	40.062	39.629	41.358	-0.1497					166	45	5	0	0	0	1.1062	1	3467	3467		9.6461	0.84683	1	4197600			87346	14495	60793	60893	96987	96987					0.2385844771565644
VRLCPAGAV	9	Unmodified	_VRLCPAGAV_					0	0	0		ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39	ENSG00000204618|ENST00000244360|RNF39	ENSG00000204618|ENST00000244360|RNF39	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2591857910156	2	443.25238	884.490207	-0.94131	-0.00041724	2.374	0.0010523	1.4327	0.00063504	443.25344195929733	27.04	0.48265	27.121	26.799	27.282	0.081291					29	12	4	0	0	0	0.024386	1	1396	1396		33.516	0	1	2290900			87347	10360	60794	60894	96988	96988					0.0433416609082542
VRLCPAGAV	9	Unmodified	_VRLCPAGAV_					0	0	0		ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39	ENSG00000204618|ENST00000244360|RNF39	ENSG00000204618|ENST00000244360|RNF39	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	443.25238	884.490207	-0.49002	-0.0002172	8.0056	0.0035485	7.5155	0.0033313	443.2558410528514	27.308	0.72231	27.066	26.744	27.466	-0.24217	0.030472	0.0015657	NaN	33.516	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633030			87348	10360	60794	60894							0.0433416609082542
VRLCPAGAV	9	Unmodified	_VRLCPAGAV_					0	0	0		ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39	ENSG00000204618|ENST00000244360|RNF39	ENSG00000204618|ENST00000244360|RNF39	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	443.25238	884.490207	-0.51302	-0.0002274	8.0825	0.0035826	7.5695	0.0033552	443.2558449221219	27.082	0.76682	26.914	26.55	27.317	-0.16816	-0.1212	0.0016339	NaN	33.516	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	551720			87349	10360	60794	60894							0.0433416609082542
VRLCPAGAV	9	Unmodified	_VRLCPAGAV_					0	0	0		ENSG00000204618|ENST00000244360|RNF39;nc|ENSG00000204618|Q9H2S5|RNF39	ENSG00000204618|ENST00000244360|RNF39	ENSG00000204618|ENST00000244360|RNF39	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	443.25238	884.490207	-0.059923	-2.6561E-05	7.6669	0.0033984	7.607	0.0033718	443.255583518205	27.197	0.96233	27.04	26.802	27.764	-0.15664	0.0048165	0.0012655	NaN	33.516	48	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644170			87350	10360	60794	60894							0.0433416609082542
VRLCWFCD	8	Unmodified	_VRLCWFCD_					0	0	0			REV__ENST00000212355.8_1_1:92200470-92224198:-|nuORF	REV__ENST00000212355.8_1_1:92200470-92224198:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.751220703125	2	521.235873	1040.45719	-0.32315	-0.00016844	2.4941	0.0013	2.171	0.0011316	521.2370161100961	42.334	0.68038	42.212	41.924	42.604	-0.12299					39	17	3	0	0	0	0.027866	1	3767	3767		19.36	0	1	1165500	+		87351	29306	60795	60895	96989	96989					-0.061417840235435506
VRLCWFCD	8	Unmodified	_VRLCWFCD_					0	0	0			REV__ENST00000212355.8_1_1:92200470-92224198:-|nuORF	REV__ENST00000212355.8_1_1:92200470-92224198:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	521.7512817382812	2	521.235873	1040.45719	-0.2286	-0.00011915	2.2813	0.0011891	2.0527	0.00107	521.2368373695404	42.522	0.71264	42.291	41.997	42.71	-0.23029					44	18	4	0	0	0	0.027866	1	3779	3779		19.36	0	1	1126400	+		87352	29306	60795	60895	96990	96990					-0.061417840235435506
VRLGPGRAR	9	Unmodified	_VRLGPGRAR_					0	0	0		ENST00000322177.5_1_15:75249143-75249248:-|nuORF	ENST00000322177.5_1_15:75249143-75249248:-|nuORF	ENST00000322177.5_1_15:75249143-75249248:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.33685302734375	2	491.306867	980.599181	0.064317	3.1599E-05	2.8123	0.0013817	2.8766	0.0014133	491.3081864558257	76.261	0.44238	76.01	75.829	76.271	-0.25162					17	10	2	0	0	0	0.024405	1	9081	9081		44.117	13.613	1	103140			87353	12218	60796	60896	96991	96991					0.10810513105320751
VRLGPGRAR	9	Unmodified	_VRLGPGRAR_					0	0	0		ENST00000322177.5_1_15:75249143-75249248:-|nuORF	ENST00000322177.5_1_15:75249143-75249248:-|nuORF	ENST00000322177.5_1_15:75249143-75249248:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	491.306867	980.599181	0.2551	0.00012533	2.7915	0.0013715	3.0466	0.0014968	491.3081338123931	76.039	0.38781	75.87	75.665	76.053	-0.16908	-0.094007	-6.9515E-05	NaN	44.117	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154580			87354	12218	60796	60896							0.10810513105320751
VRLHLVFQR	9	Unmodified	_VRLHLVFQR_					0	0	0			REV__ENST00000377618.4_9:39446980-39447016:-|nuORF	REV__ENST00000377618.4_9:39446980-39447016:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.3563842773438	2	584.359099	1166.70365	-1.2459	-0.00072803	-3.5234	-0.0020589	-4.7692	-0.0027869	584.3569062668547	91.004	2.861	90.88	89.85	92.711	-0.12341					175	68	3	0	0	0	0.98697	1	11179	11179		23.042	1.0826	1	556520	+		87355	31379	60797	60897	96992	96992					0.1269621486203505
VRLIDREGLD	10	Unmodified	_VRLIDREGLD_					0	0	0			REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	592.3447265625	2	593.332944	1184.65134	-1.5824	-0.0009389	-3.4894	-0.0020703	-5.0718	-0.0030092	593.3296494037089	61.266	0.49707	61.09	60.833	61.33	-0.1761					22	11	3	0	0	0	0.03519	1	6852	6852		52.937	24.855	1	105240	+		87356	37813	60798	60898	96993	96993					0.06639586937740205
VRLIDREGLD	10	Unmodified	_VRLIDREGLD_					0	0	0			REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	593.332944	1184.65134	-1.0141	-0.0006017	4.2708	0.002534	3.2567	0.0019323	593.8363946115606	61.276	0.34517	61.276	61.108	61.453	0	0.050826	0.0020643	NaN	52.937	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112600	+		87357	37813	60798	60898							0.06639586937740205
VRLIDREGLD	10	Unmodified	_VRLIDREGLD_					0	0	0			REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	593.332944	1184.65134	-0.59714	-0.0003543	3.4991	0.0020761	2.9019	0.0017218	593.8362075923012	61.488	0.30246	61.261	61.153	61.455	-0.22663	0.03543	0.0011485	NaN	52.937	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111220	+		87358	37813	60798	60898							0.06639586937740205
VRLIDREGLD	10	Unmodified	_VRLIDREGLD_					0	0	0			REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	REV__ZNF641|p.E163G|1|0.83|ENSG00000167528|chr12:48344673-48344673|T/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	593.332944	1184.65134	0.2865	0.00016999	3.7438	0.0022213	4.0303	0.0023913	593.3353063370007	61.204	0.22723	61.275	61.167	61.394	0.071129	0.049687	0.0014389	NaN	52.937	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83805	+		87359	37813	60798	60898							0.06639586937740205
VRLKLEETRE	10	Unmodified	_VRLKLEETRE_					0	0	0		ENST00000461349.5_1_9:132593183-132597524:-|nuORF;ENSG00000136819|ENST00000372447|C9orf78	ENST00000461349.5_1_9:132593183-132597524:-|nuORF	ENST00000461349.5_1_9:132593183-132597524:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.9139404296875	3	424.91386	1271.71975	-0.69923	-0.00029711	-2.3228	-0.00098697	-3.022	-0.0012841	424.91269935882156	39.082	1.2239	38.983	38.358	39.582	-0.098751					107	33	5	0	0	0	1.0814	1	3332	3332		35.178	1.2566	1	12764000			87360	5050	60799	60899	96994	96994					0.09475831517579536
VRLLGLRK	8	Unmodified	_VRLLGLRK_					0	0	0		ENST00000478974.1_1_7:20371130-20371328:+|nuORF	ENST00000478974.1_1_7:20371130-20371328:+|nuORF	ENST00000478974.1_1_7:20371130-20371328:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.8335876464844	2	477.832186	953.649819	0.39262	0.00018761	2.883	0.0013776	3.2756	0.0015652	477.8334281447745	105.79	1.1708	105.79	105.37	106.54	-0.0013199					118	39	4	0	0	0	1.0574	1	13509	13509		12.959	0	1	1956600			87361	15160	60800	60900	96995	96995					0.17114042430318932
VRLLRFLL	8	Unmodified	_VRLLRFLL_					0	0	0		ENST00000379958.2_1_7:92735396-92747190:-|nuORF	ENST00000379958.2_1_7:92735396-92747190:-|nuORF	ENST00000379958.2_1_7:92735396-92747190:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3134155273438	2	515.350212	1028.68587	-0.39686	-0.00020452	2.7968	0.0014413	2.3999	0.0012368	515.8541012905091	88.159	0.23197	87.988	87.817	88.049	-0.17054					6	5	2	0	0	0	0.027866	1	10724	10724		8.8223	0	1	41832			87362	13293	60801	60901	96996	96996					0.17267499607191894
VRLLSFADL	9	Unmodified	_VRLLSFADL_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2536010742188	2	517.305667	1032.59678	0.46566	0.00024089	-2.0972	-0.0010849	-1.6315	-0.000844	517.3042430495971	68.666	0.80617	68.423	68.11	68.916	-0.24277					36	19	3	0	0	0	0.024541	1	7919	7919		19.997	0	1	449890			87363	8084	60802	60902	96997	96997					0.08178619856994374
VRLLSLVVSG	10	Unmodified	_VRLLSLVVSG_					0	0	0		ENST00000539613.5_1_2:227700803-227704239:+|nuORF	ENST00000539613.5_1_2:227700803-227704239:+|nuORF	ENST00000539613.5_1_2:227700803-227704239:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7926025390625	2	521.834591	1041.65463	-0.35455	-0.00018502	-1.564	-0.00081617	-1.9186	-0.0010012	522.3348828190626	44.977	0.3556	45.02	44.858	45.214	0.043877					13	9	2	0	0	0	0.03519	1	4296	4296		62.107	0	1	184210			87364	16405	60803	60903	96998	96998					0.13546881782417586
VRLNSRIL	8	Unmodified	_VRLNSRIL_					0	0	0			REV__ENST00000537435.2_1_12:95928028-95941786:-|nuORF	REV__ENST00000537435.2_1_12:95928028-95941786:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.81121826171875	2	485.811451	969.608348	0.75246	0.00036555	1.2038	0.00058482	1.9563	0.00095038	485.81208633493674	106.86	0.61832	106.86	106.6	107.22	0					27	19	3	0	0	0	1.0017	1	13742	13742		37.028	1.8278	1	177660	+		87365	34699	60804	60904	96999	96999					0.12232861670997863
VRLNTIEG	8	Unmodified	_VRLNTIEG_					0	0	0			REV__ENSG00000196878|ENST00000356082|LAMB3	REV__ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.77923583984375	2	451.258717	900.50288	-0.052205	-2.3558E-05	4.4515	0.0020088	4.3993	0.0019852	451.2605264905233	54.782	0.57493	54.551	54.246	54.821	-0.23087					32	15	3	0	0	0	0.027866	1	5784	5784		12.959	0	1	406970	+		87366	28234	60805	60905	97000	97000					0.048649007547169276
VRLNTIEG	8	Unmodified	_VRLNTIEG_					0	0	0			REV__ENSG00000196878|ENST00000356082|LAMB3	REV__ENSG00000196878|ENST00000356082|LAMB3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.258717	900.50288	-0.080801	-3.6462E-05	4.7241	0.0021318	4.6433	0.0020953	451.2606382364216	54.65	0.55507	54.504	54.245	54.8	-0.14609	-0.01624	0.00023905	NaN	12.959	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382410	+		87367	28234	60805	60905							0.048649007547169276
VRLPCAVLR	9	Unmodified	_VRLPCAVLR_					0	0	0		ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8154296875	2	513.815679	1025.6168	-0.60319	-0.00030993	0.036307	1.8655E-05	-0.56688	-0.00029127	513.8157341182409	44.832	1.1662	44.869	44.578	45.744	0.036903					92	33	5	0	0	0	0.85329	1	4231	4231		35.618	0	1	19795000			87368	4394	60806	60906	97001	97001					0.10502092315959999
VRLRGDKSA	9	Unmodified	_VRLRGDKSA_					0	0	0			REV__NCKAP1-PARD3|1|fusion	REV__NCKAP1-PARD3|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2934265136719	2	501.296165	1000.57778	0.15186	7.6127E-05	1.6689	0.00083659	1.8207	0.00091272	501.29683272152283	82.699	0.30492	82.518	82.287	82.592	-0.18079					10	6	3	0	0	0	0.67687	1	9967	9967		47.657	1.6851	1	334000	+		87369	24623	60807	60907	97002	97002					0.07751083285938876
VRLRPCEKKRL	11	Unmodified	_VRLRPCEKKRL_					0	0	0		DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant;nc|ENSG00000141994|Q96G46-2|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5787014-5789688:-|nuORF	DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6216125488281	3	466.622246	1396.84491	0.15231	7.1069E-05	-1.7918	-0.00083609	-1.6395	-0.00076502	466.62143840072247	46.584	0.71166	46.487	46.259	46.971	-0.096649					84	19	6	0	0	0	1.044	1	4492	4492		26.75	4.9693	1	42650000			87370	676	60808	60908	97003	97003					0.16235845172968766
VRLRPCEKKRL	11	Unmodified	_VRLRPCEKKRL_					0	0	0		DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant;nc|ENSG00000141994|Q96G46-2|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5787014-5789688:-|nuORF	DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	DUS3L|p.G407Afs*5|1|0.26|ENSG00000141994|chr19:5787354-5787354|C/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	466.622246	1396.84491	-0.68413	-0.00031923	0.55946	0.00026106	-0.12467	-5.8174E-05	466.6217532419384	46.705	0.33332	46.511	46.345	46.678	-0.19387	-0.023317	0.0032373	NaN	26.75	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290260			87371	676	60808	60908							0.16235845172968766
VRLRPPGAY	9	Unmodified	_VRLRPPGAY_					0	0	0		ENST00000258439.7_1_2:96918849-96919380:-|nuORF	ENST00000258439.7_1_2:96918849-96919380:-|nuORF	ENST00000258439.7_1_2:96918849-96919380:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	514.8036499023438	2	514.803626	1027.5927	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.409	1	66.439	65.939	66.939	0.030106								0	0	0	0.75732	1	7821	7821		8.2313	3.5495	1				87372	11424	60809	60909	97004	97004					0.08000575153937461
VRLTVAEDL	9	Unmodified	_VRLTVAEDL_					0	0	0			REV__ENSG00000006118|ENST00000453848|TMEM132A	REV__ENSG00000006118|ENST00000453848|TMEM132A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.29254150390625	2	508.292756	1014.57096	-0.18694	-9.5019E-05	-0.37358	-0.00018989	-0.56052	-0.00028491	508.2926224436215	50.758	0.86573	50.609	50.289	51.155	-0.14916					93	24	5	0	0	0	0.10174	1	5293	5293		110.12	0	1	59201000	+		87373	19823	60810	60910	97005	97005					0.06425725614712974
VRLTVAEDL	9	Unmodified	_VRLTVAEDL_					0	0	0			REV__ENSG00000006118|ENST00000453848|TMEM132A	REV__ENSG00000006118|ENST00000453848|TMEM132A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2931213378906	2	508.292756	1014.57096	0.18823	9.5678E-05	-0.084558	-4.298E-05	0.10368	5.2698E-05	508.29252354828037	50.549	1.0472	50.438	50.082	51.129	-0.11163					89	27	6	0	0	0	0.10174	1	5177	5177		110.12	0	1	7647100	+		87374	19823	60810	60910	97006	97006					0.06425725614712974
VRLVKPPW	8	Unmodified	_VRLVKPPW_					0	0	0			REV__SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|20|2|sense	REV__SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|20|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	497.2628173828125	2	497.813462	993.612371	0.11771	5.8599E-05	-1.217	-0.00060582	-1.0993	-0.00054722	497.8128031407584	56.179	0.57167	55.963	55.702	56.274	-0.21607					28	14	3	0	0	0	0.027866	1	6034	6034		23.037	7.3949	1	620860	+		87375	37625	60811	60911	97007	97007					0.1153095116469558
VRMIDQLCY	9	Unmodified	_VRMIDQLCY_					0	0	0			REV__nc|ENSG00000001631|O00522-3|KRIT1	REV__nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	570.315185546875	2	570.780644	1139.54674	-0.14057	-8.0234E-05	-4.0883	-0.0023335	-4.2289	-0.0024138	570.7787866864094	73.039	0.46887	72.762	72.582	73.051	-0.2769					17	10	2	0	0	0	0.024523	1	8568	8568		29.15	0	1	263990	+		87376	19761	60812	60912	97008	97008					-0.01745574134815797
VRMVRDNL	8	Unmodified	_VRMVRDNL_					0	0	0			REV__ENSG00000072274|ENST00000360110|TFRC	REV__ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.7775573730469	2	501.779293	1001.54403	0.49632	0.00024905	-4.3151	-0.0021652	-3.8188	-0.0019162	501.7769277984687	71.646	0.41749	71.646	71.339	71.756	0					23	10	3	0	0	0	0.50239	1	8698	8698		85.359	0.19866	1	2105800	+		87377	20468	60813	60913	97009	97009					0.04332338522533519
VRNADAGHAL	10	Unmodified	_VRNADAGHAL_					0	0	0			REV__ENSG00000170209|ENST00000303941|ANKK1	REV__ENSG00000170209|ENST00000303941|ANKK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.27001953125	2	512.270147	1022.52574	-0.70803	-0.0003627	3.204	0.0016413	2.496	0.0012786	512.2712607905927	104.7	1.035	104.57	104.16	105.19	-0.12927					66	32	3	0	0	0	1.089	1	13035	13035		34.173	2.6427	1	187370	+		87378	26444	60814	60914	97010	97010					0.015379198721802823
VRNDAVIL	8	Unmodified	_VRNDAVIL_					0	0	0		MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant;ENSG00000159256|ENST00000400485|MORC3	MORC3|p.L704Sfs*29|1|0.5|ENSG00000159256|chr21:36369477-36369477|A/-|frameshift_variant;ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2686767578125	2	450.269084	898.523616	-1.0604	-0.00047746	0.6752	0.00030402	-0.3852	-0.00017344	450.26937028227553	48.988	1.0316	49.063	48.736	49.768	0.074196					51	27	2	0	0	0	0.81662	1	4972	4972		57.811	3.0466	1	8686700			87379	17990;6732	60815	60915	97011	97011					0.07029491134380805
VRNEIEEAR	9	Unmodified	_VRNEIEEAR_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.2933959960938	2	558.293819	1114.57309	-0.17338	-9.6797E-05	-0.38599	-0.00021549	-0.55937	-0.00031229	558.2935119169247	26.467	0.91007	26.467	26.124	27.034	0					70	21	5	0	0	0	0.2101	1	1358	1358		87.696	0	1	3011300	+		87380	23929	60816	60916	97012	97012					0.02038154352521815
VRNEIEEAR	9	Unmodified	_VRNEIEEAR_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.2933349609375	2	558.293819	1114.57309	-0.1204	-6.7216E-05	-0.59976	-0.00033484	-0.72016	-0.00040206	558.2933914959123	26.272	1.0097	26.354	26.091	27.1	0.081291					76	24	5	0	0	0	0.5973	1	1278	1278		52.937	1.744	1	2806100	+		87381	23929	60816	60916	97013	97013					0.02038154352521815
VRNLESKAL	9	Unmodified	_VRNLESKAL_					0	0	0		ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	ENSG00000166704|ENST00000551380|ZNF606	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.3078002929688	2	515.306198	1028.59784	-0.45028	-0.00023203	3.259	0.0016794	2.8087	0.0014473	515.3077403903917	62.664	0.82809	62.727	62.483	63.311	0.062767					35	18	2	0	0	0	0.26966	1	7217	7217		79.713	5.4575	1	6202100			87382	7595	60817	60917	97014	97014					0.08468834225891442
VRNLLLDG	8	Unmodified	_VRNLLLDG_					0	0	0			REV__nc|ENSG00000163636|Q15008-3|PSMD6	REV__nc|ENSG00000163636|Q15008-3|PSMD6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.26904296875	2	450.269084	898.523616	-0.82197	-0.00037011	-1.1584	-0.00052157	-1.9803	-0.00089168	450.26880667867835	38.018	1.9265	37.936	37.57	39.497	-0.082512					130	53	5	0	0	0	0.78609	1	3206	3206		60.294	0	1	136700000	+		87383	25608	60818	60918	97015	97015					0.07029491134369437
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.7823791503906	2	494.782359	987.550165	0.41137	0.00020354	-0.76705	-0.00037952	-0.35568	-0.00017598	494.78190806491074	46.609	0.76714	46.609	46.236	47.003	0					61	20	4	0	0	0	0.68535	2	4616	4616;4627		68.485	15.133	1	4926700			87384	5939	60819	60919	97016;97017	97016					0.05589180025708629
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.7823791503906	2	494.782359	987.550165	-0.51141	-0.00025304	0.14207	7.0292E-05	-0.36934	-0.00018274	494.782378309158	46.724	0.80493	46.571	46.135	46.94	-0.153					61	21	4	0	0	0	0.46709	3	4619	4619;4630;4649		88.643	21.342	1	4713200			87385	5939	60819	60919	97018;97019;97020	97018					0.05589180025708629
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.7825012207031	2	494.782359	987.550165	-0.098292	-4.8633E-05	-0.38991	-0.00019292	-0.4882	-0.00024155	494.7822032753923	46.576	0.85973	46.627	46.239	47.099	0.051399					72	23	4	0	0	0	0.68535	1	4555	4555		68.485	19.274	1	5178700			87386	5939	60819	60919	97021	97021					0.05589180025708629
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	494.782359	987.550165	-0.24596	-0.0001217	-0.17102	-8.4615E-05	-0.41697	-0.00020631	494.7821572230799	46.557	1.0464	46.46	46.115	47.161	-0.096649	-0.094182	0.00014759	NaN	88.643	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4711200			87387	5939	60819	60919							0.05589180025708629
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.782359	987.550165	0.030543	1.5112E-05	-0.84377	-0.00041748	-0.81323	-0.00040237	494.7819008240113	46.851	0.97164	46.581	46.192	47.163	-0.26939	0.026893	-0.00051815	NaN	88.643	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6261200			87388	5939	60819	60919							0.05589180025708629
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	ENST00000471419.6_1_X:70511819-70517312:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.782359	987.550165	-0.55625	-0.00027522	-0.2226	-0.00011014	-0.77885	-0.00038536	494.78216602433577	46.671	1.0645	46.477	46.128	47.192	-0.19387	-0.077436	9.6541E-05	NaN	88.643	68	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5723500			87389	5939	60819	60919							0.05589180025708629
VRNLQQKGL	9	Unmodified	_VRNLQQKGL_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.288818359375	2	528.31964	1054.62473	-0.31607	-0.00016699	0.46966	0.00024813	0.15359	8.1144E-05	528.3194864035379	35.587	0.58544	35.4	35.1	35.686	-0.18675					34	15	3	0	0	0	0.024506	1	2695	2695		38.806	12.01	1	1225200			87390	10177	60820	60920	97022	97022					0.09959942837076596
VRNPKILLL	9	Unmodified	_VRNPKILLL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2551879882812	2	533.360776	1064.707	-0.87116	-0.00046464	0.50645	0.00027012	-0.36471	-0.00019452	533.3610070909895	52.771	0.41998	52.771	52.554	52.974	0					25	10	3	0	0	0	0.024381	1	5667	5667		37.159	0	1	263560			87391	770;1795	60821	60921	97023	97023					0.17723464916048215
VRNPKILLL	9	Unmodified	_VRNPKILLL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.2547607421875	2	533.360776	1064.707	-0.34081	-0.00018177	0.0093648	4.9948E-06	-0.33144	-0.00017678	533.3606382252044	52.852	0.42207	52.704	52.488	52.91	-0.14723					23	10	3	0	0	0	0.024457	1	5662	5662		29.15	0	1	274780			87392	770;1795	60821	60921	97024	97024					0.17723464916048215
VRNPKILLL	9	Unmodified	_VRNPKILLL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	533.2549438476562	2	533.360776	1064.707	-0.17218	-9.1836E-05	-0.19171	-0.00010225	-0.36389	-0.00019409	533.3606215120896	52.665	0.41372	52.757	52.526	52.939	0.091938					18	10	2	0	0	0	0.024427	1	5585	5585		51.335	0	1	256030			87393	770;1795	60821	60921	97025	97025					0.17723464916048215
VRNPKILLL	9	Unmodified	_VRNPKILLL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.360776	1064.707	0.13457	7.1774E-05	-0.25174	-0.00013427	-0.11717	-6.2493E-05	533.360610709682	52.873	0.24062	52.615	52.482	52.723	-0.25839	-0.064219	-0.00040632	NaN	37.159	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55271			87394	770;1795	60821	60921							0.17723464916048215
VRNPKILLL	9	Unmodified	_VRNPKILLL_					0	0	0		ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.360776	1064.707	-0.35891	-0.00019143	0.13047	6.9586E-05	-0.22844	-0.00012184	533.3606963355676	52.738	0.40389	52.548	52.389	52.793	-0.18982	-0.1309	1.3818E-06	NaN	37.159	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71715			87395	770;1795	60821	60921							0.17723464916048215
VRNPRITSL	9	Unmodified	_VRNPRITSL_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.28955078125	2	528.31964	1054.62473	-0.5578	-0.0002947	0.76016	0.00040161	0.20236	0.00010691	528.3196165126029	35.666	0.59618	35.453	35.154	35.75	-0.21246					33	15	3	0	0	0	0.024323	1	2719	2719		27.882	0	1	1288400			87396	2342	60822	60922	97026	97026					0.09959942837076596
VRNSKIEIS	9	Unmodified	_VRNSKIEIS_					0	0	0		ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENSG00000167768|ENST00000252244|KRT1	ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	523.303655	1044.59276	1.1654	0.00060983	-1.3154	-0.00068838	-0.15009	-7.8542E-05	523.3027916703331	20.025	0.58031	19.825	19.455	20.035	-0.2001					27	11	4	0	0	0	0.59099	1	493	493		53.351	0	1	406050		+	87397	510	60823	60923	97027	97027					0.07224530363282611
VRNSKSLKS	9	Unmodified	_VRNSKSLKS_					0	0	0		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8031005859375	2	509.803823	1017.59309	0.56391	0.00028748	-0.9228	-0.00047045	-0.35889	-0.00018296	509.8032915033101	85.367	3.0454	85.217	84.245	87.29	-0.14967					188	71	4	0	0	0	0.98925	1	10288	10288		22.58	0.61977	1	3699900			87398	4297	60824	60924	97028	97028					0.08499950083137264
VRPAFVMKM	9	Unmodified	_VRPAFVMKM_					0	0	0		ENST00000380191.8_1_10:5807813-5807927:-|nuORF	ENST00000380191.8_1_10:5807813-5807927:-|nuORF	ENST00000380191.8_1_10:5807813-5807927:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2715454101562	2	539.79864	1077.58273	3.0494	0.0016461	-0.65045	-0.00035111	2.399	0.001295	539.7980505281363	17.907	0.24794	17.658	17.522	17.77	-0.24851					7	4	2	0	0	0	0.024506	1	199	199		30.504	1.3336	1	7880			87399	13301	60825	60925	97029	97029					0.04703927832701993
VRPDLRAS	8	Unmodified	_VRPDLRAS_					0	0	0		ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.26324462890625	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	1.043	1	10210	10210		30.504	0	1	2903100			87400	14808	60826	60926	97030	97030					0.054357228488470355
VRPDLRAS	8	Unmodified	_VRPDLRAS_					0	0	0		ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.264404296875	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	1.043	1	9910	9910		30.504	1.3541	1	2920900			87401	14808	60826	60926	97031	97031					0.054357228488470355
VRPDLRAS	8	Unmodified	_VRPDLRAS_					0	0	0		ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.2644958496094	2	457.264333	912.514114	0.383	0.00017513	-0.35618	-0.00016287	0.026819	1.2263E-05	457.2640472481876	80.971	3.7416	80.733	79.874	83.615	-0.23784					329	88	5	0	0	0	0.93274	7	9758	9650;9675;9688;9700;9758;9769;9793		47.916	5.2906	1	4505400			87402	14808	60826	60926	97032;97033;97034;97035;97036;97037;97038	97036					0.054357228488470355
VRPDLRAS	8	Unmodified	_VRPDLRAS_					0	0	0		ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.26434326171875	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	0.93274	8	9755	9707;9719;9731;9744;9755;9825;9850;9885		47.916	1.647	1	4140300			87403	14808	60826	60926	97039;97040;97041;97042;97043;97044;97045;97046	97043					0.054357228488470355
VRPDLRAS	8	Unmodified	_VRPDLRAS_					0	0	0		ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	ENST00000466346.1_1_11:1972144-1974292:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.26434326171875	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	0.95679	2	9810	9786;9810		44.117	5.3107	1	3503800			87404	14808	60826	60926	97047;97048	97048					0.054357228488470355
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.7691650390625	2	546.769645	1091.52474	-1.2566	-0.00068708	1.9887	0.0010874	0.73211	0.00040029	546.7701334133843	38.544	0.61117	38.364	38.102	38.713	-0.17929					41	16	5	0	0	0	0.16638	1	3198	3198		95.815	39.094	1	2017000			87405	8880	60827	60927	97049	97049					-0.01736339287390365
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.7687377929688	2	546.769645	1091.52474	-0.8521	-0.0004659	0.7328	0.00040067	-0.1193	-6.5229E-05	546.7698909834825	38.584	0.67134	38.363	38.085	38.757	-0.22149					43	17	4	0	0	0	0.28753	2	3203	3192;3203		77.318	34.453	1	2012900			87406	8880	60827	60927	97050;97051	97051					-0.01736339287390365
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7686157226562	2	546.769645	1091.52474	-0.61382	-0.00033562	0.29077	0.00015898	-0.32305	-0.00017663	546.7697670610503	38.577	0.72954	38.358	38.117	38.846	-0.21849					39	19	4	0	0	0	0.094442	2	3190	3181;3190		112.41	51.439	1	2123000			87407	8880	60827	60927	97052;97053	97053					-0.01736339287390365
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.769645	1091.52474	-1.5162	-0.00082901	1.3219	0.0007228	-0.19425	-0.00010621	546.7701438972476	38.375	0.56202	38.375	38.199	38.761	0	0.011061	-3.2967E-05	NaN	112.41	40	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1642500			87408	8880	60827	60927							-0.01736339287390365
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	546.769645	1091.52474	-1.356	-0.00074142	1.3389	0.00073204	-0.017157	-9.3812E-06	546.7701734147738	38.291	0.66128	38.208	37.984	38.645	-0.082512	-0.15533	-1.4481E-05	NaN	112.41	58	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1436900			87409	8880	60827	60927							-0.01736339287390365
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	ENSG00000179218|ENST00000316448|CALR	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.769645	1091.52474	-2.3174	-0.0012671	2.1156	0.0011567	-0.20175	-0.00011031	546.7706584116822	38.486	0.69262	38.513	38.23	38.923	0.027275	0.14952	0.00083492	NaN	112.41	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1448600			87410	8880	60827	60927							-0.01736339287390365
VRPGAVRGG	9	Unmodified	_VRPGAVRGG_					0	0	0			REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	434.7594909667969	2	434.759218	867.503883	0.30541	0.00013278	-0.18538	-8.0597E-05	0.12003	5.2183E-05	434.7590631513954	86.846	1.5284	86.801	86.076	87.604	-0.045105					104	35	5	0	0	0	0.67308	1	10883	10883		47.916	10.756	1	5549200	+		87411	31280	60828	60928	97054	97054					0.06483159914296266
VRPGAVRGG	9	Unmodified	_VRPGAVRGG_					0	0	0			REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	434.759218	867.503883	0.47737	0.00020754	-0.3499	-0.00015212	0.12747	5.5417E-05	434.7590122874237	86.762	1.6067	86.783	86.113	87.72	0.021263	-0.018018	1.5112E-05	NaN	47.916	95	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4555800	+		87412	31280	60828	60928							0.06483159914296266
VRPGILVLI	9	Unmodified	_VRPGILVLI_					0	0	0		ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2768859863281	2	490.33677	978.658987	-0.44289	-0.00021717	0.7645	0.00037486	0.32161	0.0001577	490.33692420727596	76.608	0.69084	76.38	76.081	76.772	-0.22843					42	16	3	0	0	0	0.023596	1	9407	9407		85.359	33.06	1	442730			87413	7652	60829	60929	97055	97055					0.16880390995981998
VRPGILVLI	9	Unmodified	_VRPGILVLI_					0	0	0		ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.277099609375	2	490.33677	978.658987	0.21567	0.00010575	-0.051927	-2.5462E-05	0.16374	8.029E-05	490.3365641833634	76.231	0.99904	76.062	75.778	76.777	-0.16854					47	23	3	0	0	0	0.024535	1	9066	9066		33.516	0	1	824530			87414	7652	60829	60929	97056	97056					0.16880390995981998
VRPGLRTG	8	Unmodified	_VRPGLRTG_					0	0	0		ENST00000296978.3_1_6:130687606-130761553:+|nuORF	ENST00000296978.3_1_6:130687606-130761553:+|nuORF	ENST00000296978.3_1_6:130687606-130761553:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.2618103027344	2	428.261594	854.508634	0.10911	4.6729E-05	0.34496	0.00014773	0.45407	0.00019446	428.26185421592504	90.076	2.3328	90.059	89.541	91.873	-0.016708					194	55	6	0	0	0	1.043	2	11403	11403;11429		30.504	0	1	88816000			87415	11857	60830	60930	97057;97058	97057					0.0755604405703707
VRPGLRTG	8	Unmodified	_VRPGLRTG_					0	0	0		ENST00000296978.3_1_6:130687606-130761553:+|nuORF	ENST00000296978.3_1_6:130687606-130761553:+|nuORF	ENST00000296978.3_1_6:130687606-130761553:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.2618713378906	2	428.261594	854.508634	0.4968	0.00021276	-0.17636	-7.5526E-05	0.32044	0.00013723	428.2616032087642	90.049	2.4497	90.062	89.591	92.041	0.013443					200	58	6	0	0	0	1.0574	1	11308	11308		25.45	0	1	86424000			87416	11857	60830	60930	97059	97059					0.0755604405703707
VRPGLRTG	8	Unmodified	_VRPGLRTG_					0	0	0		ENST00000296978.3_1_6:130687606-130761553:+|nuORF	ENST00000296978.3_1_6:130687606-130761553:+|nuORF	ENST00000296978.3_1_6:130687606-130761553:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.261962890625	2	428.261594	854.508634	0.60688	0.0002599	-0.36221	-0.00015512	0.24467	0.00010478	428.261536998829	90.195	2.2632	90.057	89.575	91.838	-0.13824					185	53	6	0	0	0	1.043	3	11104	10992;11092;11104		30.504	0	1	63872000			87417	11857	60830	60930	97060;97061;97062	97062					0.0755604405703707
VRPGTALEL	9	Unmodified	_VRPGTALEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	OPSCC_39_ClassI_Rep-1	1	478.2817077636719	2	478.282192	954.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.477	1	50.477	49.977	50.977	0								0	0	0	0.28089	1	5289	5289		69.628	6.3214	1				87418	2053	60831	60931	97063	97063					0.07073760305831911
VRPGTALEL	9	Unmodified	_VRPGTALEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	OPSCC_39_ClassI_Rep-1	1	478.2821960449219	2	478.282192	954.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.548	1	50.548	50.048	51.048	0								0	0	0	0.28089	1	5302	5302		69.628	10.846	1				87419	2053	60831	60931	97064	97064					0.07073760305831911
VRPGTALEL	9	Unmodified	_VRPGTALEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MSMS	OPSCC_39_ClassI_Rep-2	2	478.28179931640625	2	478.282192	954.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.681	1	50.532	50.032	51.032	-0.14916								0	0	0	0.49967	1	5296	5296		52.937	1.6012	1				87420	2053	60831	60931	97065	97065					0.07073760305831911
VRPGTALEL	9	Unmodified	_VRPGTALEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2818603515625	2	478.282192	954.549831	0.072498	3.4674E-05	0.093951	4.4935E-05	0.16645	7.9609E-05	478.2821275331892	50.346	1.2529	50.427	50.117	51.369	0.08099					52	35	3	0	0	0	0.56934	1	5209	5209		54.776	5.3348	1	5498200			87421	2053	60831	60931	97066	97066					0.07073760305831911
VRPIPFSLAPP	11	Unmodified	_VRPIPFSLAPP_					0	0	0			REV__ENST00000552422.5_1_12:70671967-70701491:+|nuORF	REV__ENST00000552422.5_1_12:70671967-70701491:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8560791015625	2	597.355691	1192.69683	-0.47193	-0.00028191	-1.6987	-0.0010148	-2.1707	-0.0012967	597.3537728093169	103.83	1.2432	103.82	103.23	104.47	-0.0032196					82	29	5	0	0	0	1.0292	1	13223	13223		30.318	1.1682	1	650120	+		87422	34951	60832	60932	97067	97067					0.10818857190793096
VRPKANLTF	9	Unmodified	_VRPKANLTF_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2683715820312	2	523.311284	1044.60801	-0.94849	-0.00049635	1.717	0.00089853	0.76851	0.00040217	523.3119971898257	45.85	0.65285	45.699	45.446	46.099	-0.15156					25	18	2	0	0	0	0.024436	1	4426	4426		30.504	13.139	1	364710			87423	3387	60833	60933	97068	97068					0.08749441951113113
VRPKANLTF	9	Unmodified	_VRPKANLTF_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.311284	1044.60801	-0.53902	-0.00028208	1.4431	0.00075521	0.90412	0.00047313	523.3117333434424	45.609	0.23494	45.407	45.293	45.528	-0.20226	-0.2716	1.8656E-06	NaN	30.504	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94162			87424	3387	60833	60933							0.08749441951113113
VRPKCCVS	8	Unmodified	_VRPKCCVS_					0	0	0			REV__ENST00000447724.1_1_3:48342161-48342203:-|nuORF	REV__ENST00000447724.1_1_3:48342161-48342203:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	446.2320251464844	2	446.23059	890.446628	0.22578	0.00010075	2.3309	0.0010401	2.5566	0.0011409	446.23159610244517	101.7	1.5633	101.57	100.98	102.54	-0.12576					112	37	5	0	0	0	1.0338	1	12622	12622		31.955	1.4512	1	4963200	+		87425	32654	60834	60934	97069	97069					-0.002977666779656829
VRPKCDNH	8	Carbamidomethyl (C)	_VRPKC(Carbamidomethyl (C))DNH_	VRPKC(1)DNH		VRPKC(74)DNH		0	1	0			REV__ENST00000374796.6_2_20:33345315-33345600:-|nuORF	REV__ENST00000374796.6_2_20:33345315-33345600:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3106079101562	2	513.2509	1024.48725	-0.80755	-0.00041448	-2.556	-0.0013119	-3.3636	-0.0017264	513.2493942598568	64.682	0.85229	64.682	64.168	65.02	0					46	22	3	0	0	0	0.027866	1	7661	7661		73.975	8.0773	1	796150	+		87426	31309	60835	60935	97070	97070	410				-0.024017090340066716
VRPKKTTTT	9	Unmodified	_VRPKKTTTT_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.3139038085938	2	516.314023	1030.61349	-0.26252	-0.00013554	-0.2214	-0.00011431	-0.48392	-0.00024986	516.3138557977552	97.92	2.5072	97.92	97.28	99.787	0					202	57	6	0	0	0	0.87448	2	12458	12458;12470		34.173	6.2903	1	33267000	+		87427	26770	60836	60936	97071;97072	97071					0.09941120742928433
VRPKKTTTT	9	Unmodified	_VRPKKTTTT_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.3140869140625	2	516.314023	1030.61349	1.2467	0.00064367	-2.2809	-0.0011777	-1.0343	-0.00053401	516.3127200758097	98.004	2.6622	97.879	97.018	99.68	-0.12414					214	65	6	0	0	0	0.96322	1	12215	12215		27.882	1.1893	1	30440000	+		87428	26770	60836	60936	97073	97073					0.09941120742928433
VRPKMDPKQVR	11	Unmodified	_VRPKMDPKQVR_					0	0	0			REV__ENSG00000172543|ENST00000307886|CTSW	REV__ENSG00000172543|ENST00000307886|CTSW	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	451.93292236328125	3	451.930968	1352.77107	1.0842	0.00048999	2.8842	0.0013034	3.9684	0.0017934	451.9321198523276	96.984	2.193	96.984	95.823	98.016	-3.0518E-05					156	50	4	0	0	0	1.0621	1	12296	12296		21.78	2.5177	1	556020	+		87429	26685	60837	60937	97074	97074					0.1087987701066595
VRPKNGKN	8	Unmodified	_VRPKNGKN_					0	0	0			REV__ENSG00000101220|ENST00000379772|ADISSP	REV__ENSG00000101220|ENST00000379772|ADISSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.7721252441406	2	456.772326	911.530098	0.23368	0.00010674	-0.52507	-0.00023984	-0.29139	-0.0001331	456.77201428085914	89.216	1.5163	89.079	88.482	89.998	-0.13761					87	35	5	0	0	0	1.0239	1	10880	10880		33.516	0.70317	1	3359400	+		87430	21204	60838	60938	97075	97075					0.07079429085752054
VRPKSVGTN	9	Unmodified	_VRPKSVGTN_					0	0	0			REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2774963378906	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.80658	2	10240	10033;10240		38.806	1.647	1	7774800	+		87431	24321	60839	60939	97076;97077	97077					0.060319920203255606
VRPKSVGTN	9	Unmodified	_VRPKSVGTN_					0	0	0			REV__ENSG00000144283|ENST00000389759|PKP4	REV__ENSG00000144283|ENST00000389759|PKP4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2776794433594	2	479.277441	956.540328	0.4291	0.00020566	-0.54126	-0.00025941	-0.11216	-5.3755E-05	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.77768	2	10113	10041;10113		40.778	5.1599	1	7158600	+		87432	24321	60839	60939	97078;97079	97079					0.060319920203255606
VRPKVTVLN	9	Unmodified	_VRPKVTVLN_					0	0	0		nc|ENSG00000135362|Q6MZQ0-2|PRR5L;ENST00000530627.1_1_11:36476971-36484283:+|nuORF;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF;ENSG00000135362|ENST00000530639|PRR5L	nc|ENSG00000135362|Q6MZQ0-2|PRR5L	nc|ENSG00000135362|Q6MZQ0-2|PRR5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3106079101562	2	513.326934	1024.63931	-1.4646	-0.00075182	-3.0077	-0.0015439	-4.4723	-0.0022958	513.3247948772264	64.926	0.22009	64.926	64.763	64.983	0					8	5	2	0	0	0	0.019995	1	7661	7661		113.41	46.982	1	85362			87433	4883	60840	60940	97080	97080					0.12798014985241934
VRPKVTVLN	9	Unmodified	_VRPKVTVLN_					0	0	0		nc|ENSG00000135362|Q6MZQ0-2|PRR5L;ENST00000530627.1_1_11:36476971-36484283:+|nuORF;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF;ENSG00000135362|ENST00000530639|PRR5L	nc|ENSG00000135362|Q6MZQ0-2|PRR5L	nc|ENSG00000135362|Q6MZQ0-2|PRR5L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3106689453125	2	513.326934	1024.63931	-0.83783	-0.00043008	2.1744	0.0011162	1.3366	0.00068612	513.3281376738117	64.949	0.30012	64.986	64.817	65.117	0.037384					11	7	2	0	0	0	0.017396	1	7567	7567		90.37	51.117	1	172120			87434	4883	60840	60940	97081	97081					0.12798014985241934
VRPLAPAAVQ	10	Unmodified	_VRPLAPAAVQ_					0	0	0		nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.7859191894531	2	511.311284	1020.60801	0.20232	0.00010345	-1.354	-0.00069231	-1.1517	-0.00058887	511.81221043393845	87.035	0.12617	87.057	86.968	87.094	0.021263					4	2	2	0	0	0	0.03519	1	10867	10867		20.947	0	1	28129			87435	9923	60841	60941	97082	97082					0.09853441951133846
VRPLAPAAVQ	10	Unmodified	_VRPLAPAAVQ_					0	0	0		nc|ENSG00000196811|P07510-2|CHRNG;ENSG00000196811|ENST00000651502|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	nc|ENSG00000196811|P07510-2|CHRNG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.311284	1020.60801	-0.06149	-3.144E-05	-7.402	-0.0037847	-7.4635	-0.0038162	511.30872460437104	87.149	0.20752	86.97	86.862	87.07	-0.17874	-0.043275	-0.0024102	NaN	14.865	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66950			87436	9923	60841	60941							0.09853441951133846
VRPLPRTART	10	Unmodified	_VRPLPRTART_					0	0	0		ENST00000495916.1_1_7:97361495-97362128:+|nuORF	ENST00000495916.1_1_7:97361495-97362128:+|nuORF	ENST00000495916.1_1_7:97361495-97362128:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.8594360351562	2	583.859464	1165.70437	-0.716	-0.00041804	-0.29707	-0.00017345	-1.0131	-0.00059149	583.8591223363817	97.186	1.1882	97.025	96.684	97.872	-0.16106					83	26	5	0	0	0	1.1197	1	12045	12045		20.947	0	1	1429300			87437	15555	60842	60942	97083	97083					0.1281500951106409
VRPLRFACV	9	Unmodified	_VRPLRFACV_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1;ENST00000489951.1_1_7:149427187-149427675:+|nuORF	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8087158203125	2	530.807854	1059.60115	0.27337	0.00014511	1.9871	0.0010548	2.2605	0.0011999	530.808694806215	103.87	0.53911	103.7	103.44	103.98	-0.16791					27	12	3	0	0	0	0.97516	1	12909	12909		25.45	2.4077	1	353020			87438	4718	60843	60943	97084	97084					0.07373805798897592
VRPLSSPLPP	10	Unmodified	_VRPLSSPLPP_					0	0	0			REV__ENST00000481734.1_1_3:39174545-39175936:+|nuORF	REV__ENST00000481734.1_1_3:39174545-39175936:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8168334960938	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	1.1267	1	10557	10557		29.15	1.2673	1	5249700	+		87439	33459	60844	60944	97085	97085					0.09498308748334239
VRPLWLQLR	9	Unmodified	_VRPLWLQLR_					0	0	0			REV__ENSG00000244623|ENST00000316368|OR2AE1	REV__ENSG00000244623|ENST00000316368|OR2AE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.8665161132812	2	590.8693	1179.72405	-1.6451	-0.00097203	-3.3668	-0.0019893	-5.0119	-0.0029614	590.8675248480401	102.24	1.0921	102.24	101.95	103.04	0					85	25	6	0	0	0	0.83071	1	13116	13116		37.159	4.3467	1	5963900	+		87440	29002	60845	60945	97086	97086					0.14137385521826218
VRPNSKTGV	9	Unmodified	_VRPNSKTGV_					0	0	0		nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L;ENST00000481908.5_1_X:134654863-134703297:+|nuORF	nc|ENSG00000165359|Q5JSJ4|INTS6L	nc|ENSG00000165359|Q5JSJ4|INTS6L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27783203125	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.70186	1	9949	9949		45.952	0	1	7774800			87441	7404	60846	60946	97087	97087					0.06031992020336929
VRPPCNLPLW	10	Unmodified	_VRPPCNLPLW_					0	0	0			REV__nc|ENSG00000188039|Q149M9|NWD1	REV__nc|ENSG00000188039|Q149M9|NWD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	597.8564453125	2	597.826243	1193.63793	-1.7526	-0.0010478	3.1717	0.0018962	1.4191	0.00084839	598.3305610956078	93.297	0.17471	93.158	93.048	93.223	-0.13995					5	3	2	0	0	0	0.03519	1	11462	11462		21.96	0	1	25570	+		87442	32494	60847	60947	97088	97088					0.04886057624798923
VRPPGKTG	8	Unmodified	_VRPPGKTG_					0	0	0		ENST00000261205.8_1_12:79258708-79371613:+|nuORF	ENST00000261205.8_1_12:79258708-79371613:+|nuORF	ENST00000261205.8_1_12:79258708-79371613:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8878173828125	2	406.24287	810.471186	0.2952	0.00011992	-0.045122	-1.8331E-05	0.25007	0.00010159	406.2427892301353	33.72	0.80202	33.489	33.114	33.916	-0.23107					23	19	2	0	0	0	0.027866	1	2431	2431		17.365	0	1	144720			87443	11460	60848	60948	97089	97089					0.05836952791435124
VRPPGKTG	8	Unmodified	_VRPPGKTG_					0	0	0		ENST00000261205.8_1_12:79258708-79371613:+|nuORF	ENST00000261205.8_1_12:79258708-79371613:+|nuORF	ENST00000261205.8_1_12:79258708-79371613:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	406.24287	810.471186	0.072455	2.9434E-05	0.4449	0.00018074	0.51736	0.00021017	406.2429706487521	33.614	0.4794	33.62	33.321	33.801	0.0066223	0.10879	0.00015731	NaN	24.203	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85888			87444	11460	60848	60948							0.05836952791435124
VRPPGKTG	8	Unmodified	_VRPPGKTG_					0	0	0		ENST00000261205.8_1_12:79258708-79371613:+|nuORF	ENST00000261205.8_1_12:79258708-79371613:+|nuORF	ENST00000261205.8_1_12:79258708-79371613:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	406.24287	810.471186	1.9361	0.00078654	0.37402	0.00015194	2.3101	0.00093848	406.24195879524126	33.42	0.73664	33.476	32.995	33.732	0.056568	-0.035189	9.9718E-05	NaN	24.203	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89894			87445	11460	60848	60948							0.05836952791435124
VRPPLEVSLP	10	Unmodified	_VRPPLEVSLP_					0	0	0		chr12:53939642-53945000|472|20.56|0.62|5.04|+|1|HOXC13,HOXC13|1	chr12:53939642-53945000|472|20.56|0.62|5.04|+|1|HOXC13,HOXC13|1	chr12:53939642-53945000|472|20.56|0.62|5.04|+|1|HOXC13,HOXC13|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8303833007812	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.089	1	11097	11097		34.173	1.3601	1	5986700			87446	320	60849	60949	97090	97090					0.10094577919812764
VRPPRIPVFGT	11	Unmodified	_VRPPRIPVFGT_					0	0	0		ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8687133789062	2	619.87204	1237.72953	-0.20812	-0.00012901	-4.1876	-0.0025958	-4.3957	-0.0027248	619.869248531336	92.303	2.2444	92.294	91.12	93.364	-0.0082855					173	53	4	0	0	0	0.99553	1	11682	11682		37.812	6.2817	1	1362300			87447	14597	60850	60950	97091	97091					0.1201706431365892
VRPPRIPVFGT	11	Unmodified	_VRPPRIPVFGT_					0	0	0		ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8692626953125	2	619.87204	1237.72953	0.0094928	5.8843E-06	-4.2055	-0.0026069	-4.196	-0.002601	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	0.99553	1	11963	11963		37.812	1.3648	1	4373200			87448	14597	60850	60950	97092	97092					0.1201706431365892
VRPPRIPVFGT	11	Unmodified	_VRPPRIPVFGT_					0	0	0		ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8697509765625	2	619.87204	1237.72953	-1.0156	-0.00062956	-3.2113	-0.0019906	-4.2269	-0.0026202	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	1.0592	1	11864	11864		22.58	0.89391	1	4459000			87449	14597	60850	60950	97093	97093					0.1201706431365892
VRPPRIPVFGT	11	Unmodified	_VRPPRIPVFGT_					0	0	0		ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8689575195312	2	619.87204	1237.72953	-0.66003	-0.00040914	-3.555	-0.0022037	-4.215	-0.0026128	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	1.0292	1	11613	11613		30.318	3.6248	1	5229800			87450	14597	60850	60950	97094	97094					0.1201706431365892
VRPPRIPVFGT	11	Unmodified	_VRPPRIPVFGT_					0	0	0		ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	ENST00000456318.5_2_3:184080790-184080952:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8696899414062	2	619.87204	1237.72953	-0.13269	-8.2249E-05	-4.0649	-0.0025197	-4.1976	-0.002602	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	0.98904	1	11779	11779		39.253	2.8061	1	4730400			87451	14597	60850	60950	97095	97095					0.1201706431365892
VRPPWLWRSL	10	Unmodified	_VRPPWLWRSL_					0	0	0		ENST00000397967.4_1_14:21270181-21271013:-|nuORF;ENST00000340900.3_1_14:21270181-21270996:-|nuORF	ENST00000397967.4_1_14:21270181-21271013:-|nuORF	ENST00000397967.4_1_14:21270181-21271013:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	437.2569580078125	3	437.25578	1308.74551	0.65097	0.00028464	3.0133	0.0013176	3.6642	0.0016022	437.25707515347995	97.232	2.9531	97.241	96.313	99.267	0.0089111					216	67	4	0	0	0	1.1295	1	12355	12355		26.063	3.5018	1	1147200			87452	12479	60851	60951	97096	97096					0.10348770550535846
VRPRDLSA	8	Unmodified	_VRPRDLSA_					0	0	0		ENSG00000173868|ENST00000310544|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-2|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-3|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.26434326171875	2	457.264333	912.514114	-0.036934	-1.6889E-05	0.050066	2.2893E-05	0.013132	6.0046E-06	457.264252220998	80.557	4.1181	80.557	79.53	83.649	0					289	98	4	0	0	0	1.0574	4	9963	9963;9974;10023;10061		25.45	0	1	3048400			87453	8419	60852	60952	97097;97098;97099;97100	97097					0.05435722848858404
VRPRDLSA	8	Unmodified	_VRPRDLSA_					0	0	0		ENSG00000173868|ENST00000310544|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-2|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-3|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2642517089844	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	1.0239	1	10043	10043		33.516	0	1	2903100			87454	8419	60852	60952	97101	97101					0.05435722848858404
VRPRDLSA	8	Unmodified	_VRPRDLSA_					0	0	0		ENSG00000173868|ENST00000310544|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-2|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-3|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26434326171875	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.99042	2	9973	9973;10055		38.806	0	1	2920900			87455	8419	60852	60952	97102;97103	97102					0.05435722848858404
VRPRDLSA	8	Unmodified	_VRPRDLSA_					0	0	0		ENSG00000173868|ENST00000310544|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-2|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-3|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.2643737792969	2	457.264333	912.514114	0.20301	9.2831E-05	-0.28393	-0.00012983	-0.080914	-3.6999E-05	457.2640980960295	80.936	3.7397	80.73	79.969	83.709	-0.20633					342	88	5	0	0	0	0.99042	1	9767	9767		38.806	5.2906	1	4140300			87456	8419	60852	60952	97104	97104					0.05435722848858404
VRPRDLSA	8	Unmodified	_VRPRDLSA_					0	0	0		ENSG00000173868|ENST00000310544|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-2|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-3|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	ENSG00000173868|ENST00000310544|PHOSPHO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.2646179199219	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	0.96719	4	9631	9631;9691;9774;9835		42.474	5.2906	1	3503800			87457	8419	60852	60952	97105;97106;97107;97108	97105					0.05435722848858404
VRPRGYRVS	9	Unmodified	_VRPRGYRVS_					0	0	0		ENST00000547760.1_3_14:31897374-31926552:-|nuORF	ENST00000547760.1_3_14:31897374-31926552:-|nuORF	ENST00000547760.1_3_14:31897374-31926552:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.316650390625	2	545.317432	1088.62031	-0.6354	-0.0003465	-0.75836	-0.00041355	-1.3938	-0.00076004	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.72875	1	11463	11463		44.117	0	1	11705000			87458	16541	60853	60953	97109	97109					0.07954478414194455
VRPRSPSA	8	Unmodified	_VRPRSPSA_					0	0	0			REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	435.2513427734375	2	435.251226	868.487899	0.073271	3.1891E-05	0.17364	7.5575E-05	0.24691	0.00010747	435.2512397453722	78.124	4.3035	78.124	76.955	81.258	0					321	103	4	0	0	0	1.043	1	9724	9724		30.504	0	1	1708300	+		87459	31211	60854	60954	97110	97110					0.04839453677379879
VRPRSPSA	8	Unmodified	_VRPRSPSA_					0	0	0			REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	435.2510681152344	2	435.251226	868.487899	-0.055368	-2.4099E-05	0.32065	0.00013956	0.26528	0.00011546	435.2513068752821	78.468	4.3044	78.276	77.014	81.318	-0.19211					280	103	3	0	0	0	1.043	1	9712	9712		30.504	0	1	1610700	+		87460	31211	60854	60954	97111	97111					0.04839453677379879
VRPRSPSA	8	Unmodified	_VRPRSPSA_					0	0	0			REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.25146484375	2	435.251226	868.487899	0.27375	0.00011915	-0.081856	-3.5628E-05	0.19189	8.3521E-05	435.2511042598272	78.888	4.2097	78.633	77.035	81.245	-0.25471					313	100	4	0	0	0	0.96719	3	9343	9309;9343;9416		42.474	0	1	2257900	+		87461	31211	60854	60954	97112;97113;97114	97113					0.04839453677379879
VRPRSPSA	8	Unmodified	_VRPRSPSA_					0	0	0			REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	435.2513427734375	2	435.251226	868.487899	0.37045	0.00016124	-0.24867	-0.00010823	0.12178	5.3003E-05	435.2510350447006	78.344	6.5033	78.112	77.052	83.555	-0.23141					347	154	3	0	0	0	0.99042	3	9585	9417;9491;9585		38.806	3.6054	1	2292300	+		87462	31211	60854	60954	97115;97116;97117	97117					0.04839453677379879
VRPRSPSA	8	Unmodified	_VRPRSPSA_					0	0	0			REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	REV__ENST00000372583.5_1_1:42049420-42049822:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.25128173828125	2	435.251226	868.487899	0.47721	0.00020771	-0.39668	-0.00017265	0.080539	3.5055E-05	435.25096174492296	78.777	4.2794	78.621	77.065	81.344	-0.15592					309	101	4	0	0	0	1.0574	1	9512	9512		25.45	0	1	1872200	+		87463	31211	60854	60954	97118	97118					0.04839453677379879
VRPRTLSA	8	Unmodified	_VRPRTLSA_					0	0	0		ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	450.2742919921875	2	450.274701	898.534849	-0.35559	-0.00016011	-0.72196	-0.00032508	-1.0775	-0.00048519	450.2743899029479	92.158	2.2866	92.158	91.641	93.927	0					234	54	7	0	0	0	0.97924	5	11678	11654;11666;11678;11690;11738		40.573	0	1	67958000			87464	15130	60855	60955	97119;97120;97121;97122;97123	97121					0.08152313228515595
VRPRTLSA	8	Unmodified	_VRPRTLSA_					0	0	0		ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	450.27459716796875	2	450.274701	898.534849	-0.17068	-7.6855E-05	-0.93719	-0.00042199	-1.1079	-0.00049885	450.27430949554383	92.215	2.3675	92.207	91.494	93.862	-0.0082932					199	56	6	0	0	0	1.0009	1	11734	11734		37.159	0	1	67707000			87465	15130	60855	60955	97124	97124					0.08152313228515595
VRPRTLSA	8	Unmodified	_VRPRTLSA_					0	0	0		ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.2745361328125	2	450.274701	898.534849	0.37578	0.0001692	-1.4515	-0.00065358	-1.0757	-0.00048437	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	1.0338	3	11663	11614;11638;11663		31.955	0	1	69580000			87466	15130	60855	60955	97125;97126;97127	97127					0.08152313228515595
VRPRTLSA	8	Unmodified	_VRPRTLSA_					0	0	0		ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	450.27471923828125	2	450.274701	898.534849	-0.15897	-7.158E-05	-0.95561	-0.00043029	-1.1146	-0.00050187	450.2743078955315	92.324	2.1687	92.201	91.717	93.886	-0.12242					198	50	6	0	0	0	1.0009	3	11319	11319;11343;11392		37.159	0	1	55183000			87467	15130	60855	60955	97128;97129;97130	97128					0.08152313228515595
VRPRTLSA	8	Unmodified	_VRPRTLSA_					0	0	0		ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	450.27435302734375	2	450.274701	898.534849	0.10472	4.7152E-05	-1.1606	-0.00052261	-1.0559	-0.00047546	450.27420091803094	92.333	2.0403	92.192	91.748	93.788	-0.14131					175	47	6	0	0	0	0.96769	2	11403	11340;11403		42.396	0	1	53243000			87468	15130	60855	60955	97131;97132	97132					0.08152313228515595
VRPSFNKKSD	10	Unmodified	_VRPSFNKKSD_					0	0	0		ENST00000580589.5_1_17:56621981-56634178:+|nuORF	ENST00000580589.5_1_17:56621981-56634178:+|nuORF	ENST00000580589.5_1_17:56621981-56634178:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.3429565429688	2	589.319837	1176.62512	-0.57428	-0.00033843	2.7404	0.001615	2.1661	0.0012765	589.3204271112553	93.071	0.43047	92.927	92.659	93.089	-0.14411					14	9	2	0	0	0	0.03519	1	11400	11400		40.778	9.2484	1	50907			87469	17152	60856	60956	97133	97133					0.0438731776628174
VRPTDGRI	8	Unmodified	_VRPTDGRI_					0	0	0			REV__ENST00000372397.6_1_X:106960162-106960288:-|nuORF	REV__ENST00000372397.6_1_X:106960162-106960288:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.26300048828125	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.0338	1	9907	9907		31.955	0	1	3503800	+		87470	31202	60857	60957	97134	97134					0.05435722848869773
VRPVAETK	8	Unmodified	_VRPVAETK_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.21734619140625	2	450.269084	898.523616	0.32037	0.00014425	1.5623	0.00070347	1.8827	0.00084772	450.269916602323	25.041	0.29351	25.121	24.961	25.254	0.080088					9	6	2	0	0	0	0.027866	1	1094	1094		37.159	6.6555	1	26443	+		87471	28149	60858	60958	97135	97135					0.07029491134369437
VRPVAETK	8	Unmodified	_VRPVAETK_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	450.269084	898.523616	-0.32027	-0.00014421	0.87286	0.00039302	0.55258	0.00024881	450.2692597189107	25.478	0.37374	25.251	25.061	25.434	-0.22683	0.10938	0.00010083	NaN	37.159	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110770	+		87472	28149	60858	60958							0.07029491134369437
VRPVAETK	8	Unmodified	_VRPVAETK_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	450.269084	898.523616	-0.16829	-7.5776E-05	0.2631	0.00011846	0.094807	4.2689E-05	450.2690004239411	25.224	0.38049	25.053	24.825	25.205	-0.17078	-0.088335	-0.00044828	NaN	37.159	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83768	+		87473	28149	60858	60958							0.07029491134369437
VRPVIQMTVVP	11	Unmodified	_VRPVIQMTVVP_					0	0	0			REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8689575195312	2	619.868108	1237.72166	-0.9051	-0.00056104	2.858	0.0017716	1.9529	0.0012106	619.869711333175	92.412	2.3777	92.412	91.051	93.429	0					189	56	4	0	0	0	0.98904	2	11778	11753;11778		39.253	10.083	1	1314500	+		87474	31785	60859	60959	97136;97137	97137					0.11231169001871422
VRPVIQMTVVP	11	Unmodified	_VRPVIQMTVVP_					0	0	0			REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8695678710938	2	619.868108	1237.72166	-0.66004	-0.00040914	2.7871	0.0017276	2.1271	0.0013185	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	0.9728	1	11756	11756		42.864	6.4175	1	5229800	+		87475	31785	60859	60959	97138	97138					0.11231169001871422
VRPVIQMTVVP	11	Unmodified	_VRPVIQMTVVP_					0	0	0			REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8684692382812	2	619.868108	1237.72166	0.12405	7.6895E-05	1.728	0.0010711	1.8521	0.001148	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0292	1	11337	11337		30.318	4.7437	1	1596200	+		87476	31785	60859	60959	97139	97139					0.11231169001871422
VRQDLRSGAEP	11	Unmodified	_VRQDLRSGAEP_					0	0	0			REV__nc|ENSG00000163359|P12111-2|COL6A3	REV__nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	409.8862609863281	3	409.886192	1226.63675	0.50506	0.00020702	-0.58502	-0.00023979	-0.079963	-3.2776E-05	409.88602842554144	34.648	1.3151	34.648	34.332	35.647	0					99	34	4	0	0	0	0.91387	1	2587	2587		50.791	4.3345	1	12931000	+		87477	25558	60860	60960	97140	97140					0.03249514789604291
VRQGPLRR	8	Unmodified	_VRQGPLRR_					0	0	0			REV__ENST00000395348.7_1_10:61469409-61469523:-|nuORF	REV__ENST00000395348.7_1_10:61469409-61469523:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.57958984375	2	491.306867	980.599181	2.0152	0.0009901	-2.4477	-0.0012026	-0.43249	-0.00021249	491.3057177242125	18.799	0.6386	18.799	18.333	18.972	0					19	12	2	0	0	0	0.027866	1	353	353		19.36	0	1	76528	+		87478	31696	60861	60961	97141	97141					0.1081051310533212
VRQKTKGN	8	Unmodified	_VRQKTKGN_					0	0	0			REV__CON__Q148H6	REV__CON__Q148H6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.777587890625	2	465.777608	929.540663	0.3767	0.00017546	-0.37361	-0.00017402	0.0030902	1.4393E-06	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	0.96769	1	9766	9766		42.396	3.59	1	1283800	+	+	87479	19567	60862	60962	97142	97142					0.07307411740180214
VRQLALSYL	9	Unmodified	_VRQLALSYL_					0	0	0		ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	ENSG00000184735|ENST00000327968|DDX53	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8164672851562	2	531.818941	1061.62333	-0.11038	-5.8701E-05	-4.0075	-0.0021313	-4.1179	-0.00219	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.83071	1	10509	10509		37.159	3.6435	1	4521600			87480	9365	60863	60963	97143	97143					0.09498308748311501
VRQLRTAS	8	Unmodified	_VRQLRTAS_					0	0	0		ENST00000588822.1_1_17:74723429-74729181:+|nuORF;ENST00000589977.5_1_17:74725800-74729181:+|nuORF;ENST00000590964.5_1_17:74722977-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	ENST00000588822.1_1_17:74723429-74729181:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	466.2378234863281	2	465.777608	929.540663	-1.3781	-0.00064191	2.7088	0.0012617	1.3307	0.00061979	465.77823946310065	29.174	0.19093	29.174	29.032	29.223	0					6	4	2	0	0	0	0.027866	1	1758	1758		40.573	8.6178	1	63884			87481	17293	60864	60964	97144	97144					0.07307411740180214
VRQPSLNLH	9	Unmodified	_VRQPSLNLH_					0	0	0			REV__nc|ENSG00000100060|O00587-2|MFNG	REV__nc|ENSG00000100060|O00587-2|MFNG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.3040161132812	2	532.30399	1062.59343	1.2315	0.00065555	-0.70606	-0.00037584	0.52546	0.00027971	532.3031908757719	19.484	0.6431	19.25	19.027	19.67	-0.23345					36	12	4	0	0	0	0.89441	1	412	412		32.812	6.0163	1	485820	+		87482	21041	60865	60965	97145	97145					0.06463369802986563
VRQRIQQTK	9	Unmodified	_VRQRIQQTK_					0	0	0			REV__ENSG00000183313|ENST00000332249|OR52L1	REV__ENSG00000183313|ENST00000332249|OR52L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.848876953125	2	578.849096	1155.68364	0.038487	2.2278E-05	-0.17096	-9.8959E-05	-0.13247	-7.6681E-05	578.8489137697786	19.183	0.49434	18.983	18.761	19.255	-0.2001					27	9	4	0	0	0	0.99726	1	384	384		20.947	0.95016	1	434440	+		87483	27564	60866	60966	97146	97146					0.11202419131404895
VRQRRGCVSLS	11	Unmodified	_VRQRRGCVSLS_					0	0	0			REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.902587890625	3	420.903301	1259.68807	1.1662	0.00049088	-3.3855	-0.001425	-2.2192	-0.00093407	420.9017745065967	109.96	0.6833	109.96	109.75	110.43	0					58	22	4	0	0	0	1.0074	1	13984	13984		35.178	11.8	1	985360	+		87484	29334	60867	60967	97147	97147					0.06861560282686696
VRQRRGCVSLS	11	Unmodified	_VRQRRGCVSLS_					0	0	0			REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	420.903301	1259.68807	1.1662	0.00049088	-3.3855	-0.001425	-2.2192	-0.00093407	420.9017745065967	109.96	0.6833	109.96	109.75	110.43	0	-0.06317	-0.001245	NaN	35.178	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985360	+		87485	29334	60867	60967							0.06861560282686696
VRQRRGCVSLS	11	Unmodified	_VRQRRGCVSLS_					0	0	0			REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	420.903301	1259.68807	0.1797	7.5637E-05	-2.5295	-0.0010647	-2.3498	-0.00098906	420.9021052530369	109.96	0.34774	109.95	109.81	110.16	-0.0094986	-0.064307	-0.00016421	NaN	35.178	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	921630	+		87486	29334	60867	60967							0.06861560282686696
VRQRRGCVSLS	11	Unmodified	_VRQRRGCVSLS_					0	0	0			REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	420.903301	1259.68807	0.2202	9.2684E-05	-2.5239	-0.0010623	-2.3037	-0.00096963	420.9021117321697	110.05	0.73855	110.05	109.83	110.57	0.0059204	0.032981	-0.00015707	NaN	35.178	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1008000	+		87487	29334	60867	60967							0.06861560282686696
VRQRRGCVSLS	11	Unmodified	_VRQRRGCVSLS_					0	0	0			REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	REV__ENST00000219235.4_1_16:57399345-57399441:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	420.903301	1259.68807	0.87736	0.00036928	-3.1994	-0.0013466	-2.322	-0.00097735	420.90186971292513	110.23	0.66843	110.09	109.78	110.45	-0.14889	0.067794	-0.00101	NaN	35.178	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254690	+		87488	29334	60867	60967							0.06861560282686696
VRQVFSESV	9	Unmodified	_VRQVFSESV_					0	0	0			REV__ENSG00000172889|ENST00000308874|EGFL7	REV__ENSG00000172889|ENST00000308874|EGFL7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.8414306640625	2	525.782556	1049.55056	-0.19357	-0.00010177	1.6465	0.0008657	1.4529	0.00076393	525.7832676036458	46.786	0.46099	46.69	46.473	46.934	-0.096649					16	12	2	0	0	0	0.024495	1	4513	4513		26.693	1.1189	1	89832	+		87489	26718	60868	60968	97148	97148					0.027765549549030766
VRRDLHKTTI	10	Unmodified	_VRRDLHKTTI_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8692016601562	2	619.870028	1237.7255	-1.5196	-0.00094193	0.13532	8.3884E-05	-1.3842	-0.00085805	619.87000320551	104.9	0.59966	104.77	104.47	105.07	-0.13099					38	19	3	0	0	0	1.1088	1	13056	13056		31.53	2.3598	1	162010			87490	8915	60869	60969	97149	97149					0.11614974819940471
VRRDSVWKY	9	Unmodified	_VRRDSVWKY_					0	0	0		ENSG00000125266|ENST00000646441|EFNB2	ENSG00000125266|ENST00000646441|EFNB2	ENSG00000125266|ENST00000646441|EFNB2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8720703125	3	403.556007	1207.64619	0.60214	0.000243	3.6622	0.0014779	4.2644	0.0017209	403.89130734454596	33.369	0.26958	33.169	33.056	33.325	-0.20019					10	6	2	0	0	0	0.024541	1	2357	2357		17.468	6.3712	1	58151			87491	4093	60870	60970	97150	97150					0.05067327865799598
VRRERQRILDG	11	Unmodified	_VRRERQRILDG_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MSMS	OPSCC_40_ClassI_Rep-2	5	466.6081848144531	3	466.607652	1396.80113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.43	1	100.31	99.809	100.81	-0.12504								0	0	0	1.3793	1	12469	12469		21.78	4.6137	1				87492	7358	60871	60971	97151	97151					0.11859952000213525
VRRFVVNY	8	Unmodified	_VRRFVVNY_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.7655029296875	2	526.803626	1051.5927	0.023199	1.2221E-05	0.23246	0.00012246	0.25565	0.00013468	526.8034013236339	56.364	0.54755	56.148	55.881	56.429	-0.21607					32	13	3	0	0	0	0.027866	1	6102	6102		44.531	12.576	1	549270	+		87493	28275	60872	60972	97152	97152					0.06896575153950835
VRRFVVNY	8	Unmodified	_VRRFVVNY_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.803626	1051.5927	-0.63195	-0.00033291	0.85357	0.00044966	0.22162	0.00011675	526.803743714514	56.274	0.62956	56.118	55.783	56.413	-0.15655	-0.056792	0.00074131	NaN	68.485	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511100	+		87494	28275	60872	60972							0.06896575153950835
VRRFVVNY	8	Unmodified	_VRRFVVNY_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.803626	1051.5927	-0.27613	-0.00014547	-0.14942	-7.8717E-05	-0.42556	-0.00022419	526.8034567437053	56.433	0.51069	56.208	55.915	56.426	-0.2248	0.033576	-0.00031546	NaN	68.485	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518450	+		87495	28275	60872	60972							0.06896575153950835
VRRGRGGL	8	Unmodified	_VRRGRGGL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6;ENST00000533210.5_1_8:144650334-144650907:-|nuORF	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	435.891357421875	2	435.77266	869.530767	-0.34953	-0.00015232	-2.0844	-0.00090833	-2.434	-0.0010606	435.77412421543943	64.542	1.0297	64.308	63.982	65.011	-0.2345					35	25	2	0	0	0	0.027866	1	7429	7429		28.254	7.7724	1	172680			87496	10379	60873	60973	97153	97153					0.09078268525468047
VRRIWNRAIP	10	Unmodified	_VRRIWNRAIP_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.8899536132812	2	640.888555	1279.76256	0.32967	0.00021128	1.9645	0.0012591	2.2942	0.0014703	640.8897075718224	80.113	1.1476	80.113	79.87	81.017	0					60	27	3	0	0	0	1.0271	1	9953	9953		42.396	0.96952	1	1246800			87497	2859	60874	60974	97154	97154					0.13386691156370034
VRRIWNRAIP	10	Unmodified	_VRRIWNRAIP_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	640.8904418945312	2	640.888555	1279.76256	-0.0089672	-5.747E-06	2.2059	0.0014137	2.1969	0.001408	640.8899002587254	80.288	1.2712	80.137	79.884	81.155	-0.15168					66	30	4	0	0	0	1.0781	1	9948	9948		35.618	7.5368	1	1064900			87498	2859	60874	60974	97155	97155					0.13386691156370034
VRRKLNVS	8	Unmodified	_VRRKLNVS_					0	0	0		ENST00000492560.6_1_7:139529050-139575514:+|nuORF	ENST00000492560.6_1_7:139529050-139575514:+|nuORF	ENST00000492560.6_1_7:139529050-139575514:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.29046630859375	2	486.309075	970.603597	-0.49994	-0.00024312	0.45956	0.00022349	-0.040372	-1.9633E-05	486.30983727890384	27.606	0.56759	27.593	27.352	27.92	-0.012983					21	14	3	0	0	0	0.027866	1	1564	1564		25.45	1.2474	1	262090			87499	15484	60875	60975	97156	97156					0.11711977528227635
VRRLEQFT	8	Unmodified	_VRRLEQFT_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.314208984375	2	524.79854	1047.58253	0.2037	0.0001069	2.8423	0.0014917	3.046	0.0015986	524.7994617450126	101.96	0.75067	101.83	101.36	102.11	-0.12931					26	17	2	0	0	0	1.0009	1	12652	12652		37.159	1.5408	1	79414	+		87500	27252	60876	60976	97157	97157					0.06063967428713113
VRRLEQFT	8	Unmodified	_VRRLEQFT_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	524.79854	1047.58253	0.26425	0.00013868	2.443	0.0012821	2.7072	0.0014207	524.7995568324499	102.04	1.2333	101.86	101.01	102.24	-0.17178	0.017912	-0.00022886	NaN	37.159	37	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89426	+		87501	27252	60876	60976							0.06063967428713113
VRRLFTEPP	9	Unmodified	_VRRLFTEPP_					0	0	0			REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	REV__ENST00000591136.1_1_17:43213568-43215707:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2595825195312	2	557.822015	1113.62948	0.47785	0.00026655	3.1303	0.0017461	3.6081	0.0020127	557.8236224211505	79.751	0.79627	79.505	79.153	79.949	-0.2465					33	18	4	0	0	0	0.024487	1	9531	9531		11.511	4.7755	1	121970	+		87502	35717	60877	60977	97158	97158					0.0772082697985752
VRRNTLIL	8	Unmodified	_VRRNTLIL_					0	0	0		ENST00000374512.7_2_6:33381598-33383628:+|nuORF	ENST00000374512.7_2_6:33381598-33383628:+|nuORF	ENST00000374512.7_2_6:33381598-33383628:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.78863525390625	2	492.819276	983.623999	0.46792	0.0002306	-1.988	-0.00097975	-1.5201	-0.00074914	492.8181025031932	20.892	0.44296	20.961	20.71	21.153	0.068901					11	8	2	0	0	0	0.027866	1	526	526		40.573	13.777	1	20444			87503	13120	60878	60978	97159	97159					0.1315314818805291
VRRPARASPP	10	Unmodified	_VRRPARASPP_					0	0	0			REV__ENST00000588791.1_1_17:27442450-27447678:-|nuORF	REV__ENST00000588791.1_1_17:27442450-27447678:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8299560546875	2	553.830706	1105.64686	-0.066307	-3.6723E-05	-1.3021	-0.00072116	-1.3684	-0.00075788	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	1.0393	1	10586	10586		40.778	1.5253	1	1623500	+		87504	35656	60879	60979	97160	97160					0.09826167305504896
VRRRCCRR	8	Unmodified	_VRRRCCRR_					0	0	0			REV__ENSG00000180767|ENST00000319340|CHST13	REV__ENSG00000180767|ENST00000319340|CHST13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8291015625	2	552.808728	1103.6029	-0.9327	-0.0005156	0.16818	9.2971E-05	-0.76452	-0.00042263	552.8092462885976	48.775	0.35737	48.842	48.657	49.015	0.066795					13	9	2	0	0	0	0.027866	1	4919	4919		26.796	0	1	225940	+		87505	27360	60880	60980	97161	97161					0.0552453633586083
VRRRKRPH	8	Unmodified	_VRRRKRPH_					0	0	0		nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B;ENST00000525945.1_1_11:123484122-123493300:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8291015625	2	552.852307	1103.69006	-0.92484	-0.0005113	0.36249	0.0002004	-0.56236	-0.0003109	552.8526172842842	48.764	0.42984	48.831	48.622	49.052	0.066795					18	11	2	0	0	0	0.027866	1	4919	4919		19.36	5.5846	1	269330			87506	967	60881	60981	97162	97162					0.14236401873449722
VRRRVGRWK	9	Unmodified	_VRRRVGRWK_					0	0	0		ENST00000445193.7_2_3:58292092-58292350:+|nuORF	ENST00000445193.7_2_3:58292092-58292350:+|nuORF	ENST00000445193.7_2_3:58292092-58292350:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.88751220703125	3	404.923135	1211.74758	0.63141	0.00025567	3.6551	0.00148	4.2865	0.0017357	404.92476017927515	17.89	0.29905	17.684	17.514	17.813	-0.20669					6	5	2	0	0	0	0.024511	1	231	231		25.574	0	1	20163			87507	14436	60882	60982	97163	97163					0.15017244079012926
VRRSAKELP	9	Unmodified	_VRRSAKELP_					0	0	0			REV__ENSG00000156858|ENST00000300835|PRR14	REV__ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.8207397460938	2	528.31964	1054.62473	0.047925	2.5319E-05	2.2794	0.0012042	2.3273	0.0012296	528.8236615721352	54.697	1.241	54.795	54.393	55.634	0.098015					97	34	5	0	0	0	0.43973	1	5934	5934		63.306	5.495	1	5435600	+		87508	25093	60883	60983	97164	97164					0.09959942837076596
VRRSVAKV	8	Unmodified	_VRRSVAKV_					0	0	0			REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	457.7984924316406	2	457.798343	913.582134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.489	1	19.556	19.056	20.056	0.066195								0	0	0	1.0534	1	380	380		16.473	0.83693	1		+		87509	35805	60884	60984	97165	97165					0.12188592499512652
VRRSVQLLLQG	11	Unmodified	_VRRSVQLLLQG_					0	0	0			REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF	REV__ENST00000498666.5_1_21:46314678-46340855:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	634.8927612304688	2	634.893503	1267.77245	0.73687	0.00046784	-1.9199	-0.0012189	-1.183	-0.00075107	634.8922740551877	104.3	1.0119	104.3	103.98	104.99	0.0031357					77	28	5	0	0	0	0.99553	1	13376	13376		37.812	0	1	1973800	+		87510	33887	60885	60985	97166	97166					0.14927834371087556
VRRVALTAPV	10	Unmodified	_VRRVALTAPV_					0	0	0			REV__ENSG00000136918|ENST00000373574|WDR38	REV__ENSG00000136918|ENST00000373574|WDR38	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.3221435546875	2	541.345658	1080.67676	-0.99227	-0.00053716	-2.3486	-0.0012714	-3.3408	-0.0018085	541.344252096494	60.273	0.42233	60.073	59.901	60.323	-0.20016					22	10	3	0	0	0	0.03519	1	6923	6923		51.335	12.529	1	201460	+		87511	23703	60886	60986	97167	97167					0.139651062508392
VRRVDRFSV	9	Unmodified	_VRRVDRFSV_					0	0	0			REV__ENST00000519457.5_3_8:95835520-95835640:+|nuORF	REV__ENST00000519457.5_3_8:95835520-95835640:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.2789306640625	2	567.330539	1132.64652	0.31371	0.00017798	1.4583	0.00082734	1.772	0.0010053	567.3312273247806	78.995	0.62918	78.763	78.476	79.106	-0.23141					35	14	3	0	0	0	0.024515	1	9475	9475		28.081	0	1	440440	+		87512	34260	60887	60987	97168	97168					0.08550747585650242
VRRVLVKSV	9	Unmodified	_VRRVLVKSV_					0	0	0			REV__nc|ENSG00000165566|Q8N7J2-2|AMER2	REV__nc|ENSG00000165566|Q8N7J2-2|AMER2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.2488403320312	2	528.356025	1054.6975	-0.34018	-0.00017974	-0.30138	-0.00015923	-0.64156	-0.00033897	528.3556948410578	32.816	0.49237	32.585	32.383	32.876	-0.23107					16	11	2	0	0	0	0.023454	1	2290	2290		71.877	3.0906	1	144620	+		87513	36875	60888	60988	97169	97169					0.17233696630501072
VRSAEDVKV	9	Unmodified	_VRSAEDVKV_					0	0	0		ENST00000528566.1_1_11:85427448-85429851:-|nuORF	ENST00000528566.1_1_11:85427448-85429851:-|nuORF	ENST00000528566.1_1_11:85427448-85429851:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.77923583984375	2	501.782556	1001.55056	0.52581	0.00026384	3.0435	0.0015272	3.5693	0.001791	501.7840526051912	72.304	1.462	72.023	71.769	73.231	-0.28124					90	36	3	0	0	0	0.16468	1	8722	8722		96.19	0	1	18919000			87514	16185	60889	60989	97170	97170					0.04984554954910436
VRSALLALYT	10	Unmodified	_VRSALLALYT_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.83056640625	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.089	1	11030	11030		34.173	2.6427	1	6583300			87515	2976	60890	60990	97171	97171					0.10094577919812764
VRSCLVVVFII	11	Unmodified	_VRSCLVVVFII_					0	0	0			REV__ENST00000261318.4_1_12:117155045-117155156:-|nuORF	REV__ENST00000261318.4_1_12:117155045-117155156:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.3763427734375	2	624.380852	1246.74715	-0.033284	-2.0782E-05	-1.7141	-0.0010703	-1.7474	-0.0010911	624.3795088411415	100.6	0.55309	100.6	100.31	100.86	0					31	12	3	0	0	0	1.0614	1	12867	12867		21.96	0	1	835050	+		87516	29620	60891	60991	97172	97172					0.13364643524323583
VRSCLVVVFII	11	Unmodified	_VRSCLVVVFII_					0	0	0			REV__ENST00000261318.4_1_12:117155045-117155156:-|nuORF	REV__ENST00000261318.4_1_12:117155045-117155156:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	624.3776245117188	2	624.380852	1246.74715	-0.38776	-0.00024211	-0.98748	-0.00061656	-1.3752	-0.00085867	624.3801274406578	105.32	0.37122	105.32	105.15	105.52	-0.0016022					26	10	3	0	0	0	1.0614	1	13450	13450		21.96	2.8564	1	774310	+		87517	29620	60891	60991	97173	97173					0.13364643524323583
VRSCLVVVFII	11	Unmodified	_VRSCLVVVFII_					0	0	0			REV__ENST00000261318.4_1_12:117155045-117155156:-|nuORF	REV__ENST00000261318.4_1_12:117155045-117155156:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	624.3762817382812	2	624.380852	1246.74715	0.28032	0.00017503	-1.1208	-0.00069979	-0.84045	-0.00052476	624.3801305600199	105.33	0.40593	105.21	105.03	105.44	-0.12444					24	9	3	0	0	0	1.0614	1	13105	13105		21.96	2.8564	1	623680	+		87518	29620	60891	60991	97174	97174					0.13364643524323583
VRSFDSPF	8	Unmodified	_VRSFDSPF_					0	0	0			REV__ENSG00000135392|ENST00000678005|DNAJC14	REV__ENSG00000135392|ENST00000678005|DNAJC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.2264709472656	2	477.737617	953.460681	-0.056056	-2.678E-05	0.18777	8.9706E-05	0.13172	6.2926E-05	477.7375094120687	34.592	0.54697	34.587	34.298	34.845	-0.0045624					28	13	3	0	0	0	0.027866	1	2609	2609		35.201	0	1	202230	+		87519	23539	60892	60992	97175	97175					-0.017910746536585975
VRSLTEEP	8	Unmodified	_VRSLTEEP_					0	0	0		ENST00000354618.9_1_1:36769659-36769833:+|nuORF	ENST00000354618.9_1_1:36769659-36769833:+|nuORF	ENST00000354618.9_1_1:36769659-36769833:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7955627441406	2	465.748182	929.481811	0.60181	0.00028029	-0.34098	-0.00015881	0.26082	0.00012148	465.7479317781696	55.419	0.77452	55.419	55.083	55.858	0					35	21	2	0	0	0	0.027866	1	6140	6140		16.473	0	1	620270			87520	12628	60893	60993	97176	97176					0.014248906551983964
VRSPRQNK	8	Unmodified	_VRSPRQNK_					0	0	0		ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	ENST00000466152.5_1_20:49557422-49575060:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.7792663574219	2	492.788507	983.562461	0.48803	0.0002405	2.8435	0.0014012	3.3315	0.0016417	492.78968970453644	49.54	0.7366	49.54	49.249	49.986	0					27	19	2	0	0	0	0.027866	1	5181	5181		42.474	1.6963	1	384430			87521	712	60894	60994	97177	97177					0.07002216488751856
VRSRKDTL	8	Unmodified	_VRSRKDTL_					0	0	0		ENST00000481773.1_1_3:113933204-113933291:+|nuORF	ENST00000481773.1_1_3:113933204-113933291:+|nuORF	ENST00000481773.1_1_3:113933204-113933291:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.790771484375	2	487.790715	973.566878	-0.4369	-0.00021311	0.19844	9.6795E-05	-0.23846	-0.00011632	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	0.99042	1	10514	10514		38.806	1.7777	1	2003200			87522	15235	60895	60995	97178	97178					0.07903680911670108
VRSRPAGP	8	Unmodified	_VRSRPAGP_					0	0	0		nc|ENSG00000135100|P20823-7|HNF1A	nc|ENSG00000135100|P20823-7|HNF1A	nc|ENSG00000135100|P20823-7|HNF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.2458190917969	2	420.245944	838.477334	-0.10878	-4.5714E-05	0.25008	0.00010509	0.1413	5.9379E-05	420.2460266028279	19.954	0.95758	19.954	19.414	20.372	0					33	19	3	0	0	0	1.0239	1	476	476		33.516	0	1	278240			87523	18291	60896	60996	97179	97179					0.05163471022945032
VRSSCVRDR	9	Unmodified	_VRSSCVRDR_					0	0	0			REV__ENST00000481171.5_1_17:37814939-37815307:+|nuORF	REV__ENST00000481171.5_1_17:37814939-37815307:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2837524414062	2	539.282731	1076.55091	-0.43342	-0.00023374	3.8882	0.0020969	3.4548	0.0018631	539.2846955044738	41.746	0.61416	41.623	41.346	41.961	-0.12299					39	16	3	0	0	0	0.77768	1	3709	3709		40.778	1.5253	1	2409600	+		87524	33448	60897	60997	97180	97180					0.015696514031105835
VRTFKVRSFV	10	Unmodified	_VRTFKVRSFV_					0	0	0			REV__nc|ENSG00000135040|Q5VZE5-2|NAA35	REV__nc|ENSG00000135040|Q5VZE5-2|NAA35	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8699340820312	2	619.87204	1237.72953	-0.47108	-0.00029201	-3.6909	-0.0022879	-4.162	-0.0025799	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	1.089	1	11739	11739		34.173	6.0911	1	4765600	+		87525	23503	60898	60998	97181	97181					0.1201706431365892
VRTHEGQQT	9	Unmodified	_VRTHEGQQT_					0	0	0			REV__ENSG00000258472|ENST00000531839|unknown	REV__ENSG00000258472|ENST00000531839|unknown	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	527.267822265625	2	528.265062	1054.51557	-0.80346	-0.00042444	1.2342	0.00065196	0.43069	0.00022752	528.2646521934599	53.115	0.33264	52.967	52.835	53.168	-0.14723					13	8	2	0	0	0	0.024438	1	5709	5709		36.447	0.82846	1	199200	+		87526	29097	60899	60999	97182	97182					-0.009506878530373797
VRTKLASSDL	10	Unmodified	_VRTKLASSDL_					0	0	0			REV__ENSG00000197077|ENST00000358431|KIAA1671	REV__ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3162841796875	2	545.316763	1088.61897	-0.6354	-0.0003465	0.4679	0.00025515	-0.1675	-9.1343E-05	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	1.0616	1	11162	11162		37.812	4.9991	1	11705000	+		87527	28260	60900	61000	97183	97183					0.07820799534761136
VRTLLQPVSRN	11	Unmodified	_VRTLLQPVSRN_					0	0	0		ENST00000414066.1_1_10:38108659-38108740:-|nuORF	ENST00000414066.1_1_10:38108659-38108740:-|nuORF	ENST00000414066.1_1_10:38108659-38108740:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8827514648438	2	641.883136	1281.75172	-2.5036	-0.001607	1.2649	0.00081193	-1.2386	-0.00079507	641.8837791135267	94.12	1.6259	93.982	93.311	94.937	-0.13779					130	37	5	0	0	0	1.0429	1	11555	11555		27.047	1.4733	1	1400600			87528	13855	60901	61001	97184	97184					0.12211243991418996
VRTMALVIP	9	Unmodified	_VRTMALVIP_					0	0	0			REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	REV__nc|ENSG00000205359|Q86UG4-3|SLCO6A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3056640625	2	500.304613	998.594672	0.34762	0.00017392	2.5087	0.0012551	2.8564	0.0014291	500.305823062621	32.879	0.85462	32.942	32.69	33.544	0.062885					38	22	3	0	0	0	0.83263	1	2279	2279		37.028	1.4102	1	2979700	+		87529	28677	60902	61002	97185	97185					0.09531867847522335
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.2708740234375	2	559.270967	1116.52738	0.19806	0.00011077	-0.35008	-0.00019579	-0.15202	-8.502E-05	559.2705843287357	49.564	1.1364	49.564	49.106	50.242	0					82	31	5	0	0	0	0.014034	3	5146	5121;5133;5146		211.39	129.08	1	3947300			87530	8430	60903	61003	97186;97187;97188	97188					-0.02622207154058742
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	559.2708129882812	2	559.270967	1116.52738	-0.23506	-0.00013146	0.023267	1.3012E-05	-0.21179	-0.00011845	559.270869144004	49.797	0.90442	49.646	49.256	50.16	-0.1512					57	24	3	0	0	0	0.015752	2	5135	5135;5146		158.07	75.77	1	3905100			87531	8430	60903	61003	97189;97190	97189					-0.02622207154058742
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	559.2706909179688	2	559.270967	1116.52738	-1.2244	-0.00068478	1.0226	0.00057189	-0.20186	-0.0001129	559.2713494789342	49.482	0.94616	49.556	49.133	50.079	0.074196					64	25	5	0	0	0	0.013887	3	5035	5035;5046;5059		185.55	111.29	1	4023700			87532	8430	60903	61003	97191;97192;97193	97191					-0.02622207154058742
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	559.270967	1116.52738	0.0088346	4.9409E-06	-0.79035	-0.00044202	-0.78152	-0.00043708	559.2705369472221	49.98	0.32893	49.7	49.51	49.839	-0.27977	0.085036	-0.0010082	NaN	185.55	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115650			87533	8430	60903	61003							-0.02622207154058742
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	559.270967	1116.52738	0.17579	9.8313E-05	-1.0598	-0.00059273	-0.88404	-0.00049442	559.2705969994109	49.789	0.334	49.608	49.383	49.717	-0.18071	-0.0064695	-0.0013096	NaN	185.55	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94313			87534	8430	60903	61003							-0.02622207154058742
VRTQGPIL	8	Unmodified	_VRTQGPIL_					0	0	0		ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP	ENSG00000165209|ENST00000348403|STRBP	ENSG00000165209|ENST00000348403|STRBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.78802490234375	2	442.271627	882.528701	0.037118	1.6416E-05	1.6623	0.00073518	1.6994	0.00075159	442.2723270330438	42.821	0.39761	42.821	42.534	42.932	0					19	10	2	0	0	0	0.027866	1	3938	3938		40.573	8.6178	1	205930			87535	7382	60904	61004	97194	97194					0.08273794997001005
VRTQLVAEP	9	Unmodified	_VRTQLVAEP_					0	0	0			REV__ENSG00000088367|ENST00000338074|EPB41L1	REV__ENSG00000088367|ENST00000338074|EPB41L1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.79150390625	2	506.792924	1011.57129	-0.35557	-0.0001802	-1.1749	-0.00059544	-1.5305	-0.00077565	506.79245433045855	44.155	1.3845	44.192	43.888	45.272	0.036903					127	39	6	0	0	0	0.32811	1	4200	4200		71.877	2.2498	1	117970000	+		87536	20813	60905	61005	97195	97195					0.06597145334558263
VRTRKGNGVF	10	Unmodified	_VRTRKGNGVF_					0	0	0		ENST00000215917.11_2_22:26884434-26886106:+|nuORF	ENST00000215917.11_2_22:26884434-26886106:+|nuORF	ENST00000215917.11_2_22:26884434-26886106:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3299560546875	2	567.330539	1132.64652	-0.43786	-0.00024841	-0.88397	-0.0005015	-1.3218	-0.00074991	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.1267	1	11116	11116		29.15	3.6994	1	4134200			87537	11150	60906	61006	97196	97196					0.0855074758567298
VRTSNFALVG	10	Unmodified	_VRTSNFALVG_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2413330078125	2	532.298373	1062.58219	-0.68856	-0.00036652	0.46056	0.00024515	-0.228	-0.00012137	532.2983391319021	34.547	0.88082	34.34	33.931	34.812	-0.20696					60	21	6	0	0	0	0.03519	1	2495	2495		37.159	0	1	1258100			87538	896	60907	61007	97197	97197					0.05340547708851773
VRTSYLLN	8	Unmodified	_VRTSYLLN_					0	0	0		ENST00000413025.5_1_10:31197867-31230525:-|nuORF	ENST00000413025.5_1_10:31197867-31230525:-|nuORF	ENST00000413025.5_1_10:31197867-31230525:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	483.27459716796875	2	483.274367	964.53418	-1.2457	-0.00060203	0.61656	0.00029797	-0.62916	-0.00030406	483.2746808228168	30.047	1.4127	30.122	29.759	31.171	0.074314					92	33	4	0	0	0	0.68164	1	1878	1878		68.787	5.4806	1	9287700			87539	13833	60908	61008	97198	97198					0.05049473788812975
VRTTVVSAV	9	Unmodified	_VRTTVVSAV_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.2614440917969	2	466.282192	930.549831	-0.34427	-0.00016052	0.78444	0.00036577	0.44017	0.00020524	466.2824881711007	51.393	0.66618	51.244	51.008	51.674	-0.14916					23	18	2	0	0	0	0.024506	1	5381	5381		6.3127	0	1	356430			87540	2112	60909	61009	97199	97199					0.08177760305852644
VRTVSPSFD	9	Unmodified	_VRTVSPSFD_					0	0	0			REV__ENSG00000068796|ENST00000407818|KIF2A	REV__ENSG00000068796|ENST00000407818|KIF2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.29736328125	2	504.261456	1006.50836	3.9494	0.0019915	0.097299	4.9064E-05	4.0467	0.0020406	504.26100229976856	18.512	0.34458	18.575	18.402	18.747	0.063307					9	6	2	0	0	0	0.024523	1	276	276		37.159	12.956	1	9922.3	+		87541	20388	60910	61010	97200	97200					0.005365795465195333
VRTVVHKF	8	Unmodified	_VRTVVHKF_					0	0	0			REV__nc|ENSG00000001617|Q13275-2|SEMA3F	REV__nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	493.27142333984375	2	493.300719	984.586885	-0.48054	-0.00023705	-3.5731	-0.0017626	-4.0536	-0.0019997	493.2996651520779	64.627	0.31245	64.372	64.23	64.542	-0.25562					14	7	3	0	0	0	0.027866	1	7363	7363		51.335	19.381	1	132760	+		87542	19760	60911	61011	97201	97201					0.09397476642277525
VRTWWRWLTFW	11	Unmodified	_VRTWWRWLTFW_					0	0	0		nc|ENSG00000164284|Q8TAA5-2|GRPEL2	nc|ENSG00000164284|Q8TAA5-2|GRPEL2	nc|ENSG00000164284|Q8TAA5-2|GRPEL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.8115234375	3	546.289372	1635.84629	-0.44881	-0.00024518	0.32051	0.00017509	-0.1283	-7.0089E-05	546.2896620174868	43.404	0.35505	43.292	43.071	43.426	-0.11253					14	9	2	0	0	0	0.024884	1	3967	3967		3.6191	2.2971	1	327340			87543	18455	60912	61012	97202	97202					0.05379802533389011
VRVGALLLL	9	Unmodified	_VRVGALLLL_					0	0	0		ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	ENSG00000108947|ENST00000226091|EFNB3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.3287658691406	2	477.328945	952.643337	-0.068032	-3.2473E-05	0.2106	0.00010053	0.14257	6.8053E-05	477.3289054610907	78.443	2.1561	78.459	78.155	80.311	0.015907					129	51	4	0	0	0	0.80658	1	9630	9630		38.806	0	1	3587800			87544	2949	60913	61013	97203	97203					0.1651210447896574
VRVKERSR	8	Unmodified	_VRVKERSR_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.318359375	2	515.317432	1028.62031	4.2489	0.0021895	-2.9209	-0.0015052	1.3279	0.0006843	515.315862165047	17.96	0.61351	18.021	17.786	18.399	0.06036					33	13	5	0	0	0	0.95679	1	186	186		44.117	4.864	1	176020			87545	18550	60914	61014	97204	97204					0.10714478414183759
VRVLLFSATG	10	Unmodified	_VRVLLFSATG_					0	0	0		FPGS|p.N414S|1|0.25|ENSG00000136877|chr9:127810060-127810060|A/G|missense_variant	FPGS|p.N414S|1|0.25|ENSG00000136877|chr9:127810060-127810060|A/G|missense_variant	FPGS|p.N414S|1|0.25|ENSG00000136877|chr9:127810060-127810060|A/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.81689453125	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	1.089	1	10876	10876		34.173	1.3601	1	3781500			87546	17657	60915	61015	97205	97205					0.09498308748334239
VRVLQQYI	8	Unmodified	_VRVLQQYI_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.80206298828125	2	509.805834	1017.59712	-0.34628	-0.00017653	-3.3935	-0.00173	-3.7398	-0.0019066	509.80369755737905	88.297	0.82144	88.126	87.893	88.714	-0.17054					32	19	2	0	0	0	0.46709	1	10757	10757		88.643	17.347	1	364470	+		87547	28313	60916	61016	97206	97206					0.08902039576844345
VRVLQQYI	8	Unmodified	_VRVLQQYI_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.805834	1017.59712	0.11802	6.0166E-05	-3.7995	-0.001937	-3.6815	-0.0018768	509.803795027884	88.25	1.1727	88.25	87.805	88.978	0	0.036032	0.00017266	NaN	88.643	64	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378470	+		87548	28313	60916	61016							0.08902039576844345
VRVLQQYI	8	Unmodified	_VRVLQQYI_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.805834	1017.59712	0.47771	0.00024354	-4.0998	-0.0020901	-3.6221	-0.0018466	509.80368717873876	88.215	0.91187	88.187	87.776	88.688	-0.027657	-0.026358	-0.00013352	NaN	88.643	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341350	+		87549	28313	60916	61016							0.08902039576844345
VRVLQQYI	8	Unmodified	_VRVLQQYI_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.805834	1017.59712	0.47328	0.00024128	-4.1665	-0.0021241	-3.6932	-0.0018828	509.80364063568237	88.252	1.0935	88.27	87.832	88.925	0.018555	0.056597	-0.00020154	NaN	88.643	54	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321990	+		87550	28313	60916	61016							0.08902039576844345
VRVLRSSN	8	Unmodified	_VRVLRSSN_					0	0	0			REV__ENSG00000166881|ENST00000300128|NEMP1	REV__ENSG00000166881|ENST00000300128|NEMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7773742675781	2	465.777608	929.540663	0.30012	0.00013979	-0.38376	-0.00017875	-0.083645	-3.896E-05	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0365	1	9760	9760		31.53	3.2755	1	1281300	+		87551	26070	60917	61017	97207	97207					0.07307411740180214
VRVNSGAPP	9	Unmodified	_VRVNSGAPP_					0	0	0			REV__ENST00000269720.6_1_19:14185538-14185667:+|nuORF	REV__ENST00000269720.6_1_19:14185538-14185667:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	447.7615966796875	2	448.751059	895.487565	0.19029	8.5392E-05	0.24272	0.00010892	0.43301	0.00019431	448.75095730028943	32.694	0.49954	32.757	32.54	33.039	0.062885					19	12	2	0	0	0	0.024523	1	2254	2254		21.96	0	1	49406	+		87552	29792	60918	61018	97208	97208					0.035640339575252256
VRVPLLLTL	9	Unmodified	_VRVPLLLTL_					0	0	0		ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7691955566406	2	512.349877	1022.6852	0.22546	0.00011551	-0.19937	-0.00010215	0.026085	1.3365E-05	512.3496806591673	86.781	1.7424	86.781	85.748	87.491	0					68	40	2	0	0	0	0.024506	1	10845	10845		23.042	0	1	178400			87553	11352	60919	61019	97209	97209					0.1747666016748326
VRVPLLLTL	9	Unmodified	_VRVPLLLTL_					0	0	0		ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7691345214844	2	512.349877	1022.6852	-0.00010846	-5.5571E-08	0.073939	3.7883E-05	0.073831	3.7827E-05	512.3497233958113	86.72	1.862	86.675	85.575	87.437	-0.045105					89	43	3	0	0	0	0.024541	1	10799	10799		30.504	0	1	173330			87554	11352	60919	61019	97210	97210					0.1747666016748326
VRVPLLLTL	9	Unmodified	_VRVPLLLTL_					0	0	0		ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.76904296875	2	512.349877	1022.6852	-0.64431	-0.00033011	0.61044	0.00031276	-0.033872	-1.7354E-05	512.3500049714643	86.68	1.8631	86.702	85.654	87.518	0.021263					86	43	3	0	0	0	0.024523	1	10756	10756		37.159	0	1	144860			87555	11352	60919	61019	97211	97211					0.1747666016748326
VRVRPGPA	8	Unmodified	_VRVRPGPA_					0	0	0			REV__ENST00000451794.5_1_2:97166351-97166474:-|nuORF	REV__ENST00000451794.5_1_2:97166351-97166474:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.2641296386719	2	426.264136	850.51372	0.098292	4.1898E-05	-0.089843	-3.8297E-05	0.008449	3.6015E-06	426.2640566355832	23.675	0.98676	23.751	23.195	24.182	0.076241					65	22	4	0	0	0	1.0133	1	930	930		35.201	1.6851	1	2570600	+		87556	32726	60920	61020	97212	97212					0.08248347919663956
VRVRQPALQTA	11	Unmodified	_VRVRQPALQTA_					0	0	0			REV__ENST00000549462.1_1_12:53591166-53600997:-|nuORF	REV__ENST00000549462.1_1_12:53591166-53600997:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8721313476562	2	619.870028	1237.7255	-1.5196	-0.00094193	0.13532	8.3884E-05	-1.3842	-0.00085805	619.87000320551	104.9	0.59966	104.77	104.47	105.07	-0.13099					38	19	3	0	0	0	1.0521	1	13047	13047		24.519	0.99649	1	162010	+		87557	23952	60921	61021	97213	97213					0.11614974819940471
VRVTDGVKV	9	Unmodified	_VRVTDGVKV_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.31561279296875	2	486.795466	971.57638	-0.87225	-0.00042461	1.1341	0.00055208	0.26186	0.00012747	486.79603905539926	39.36	0.28634	39.261	39.054	39.341	-0.098751					14	7	2	0	0	0	0.024427	1	3369	3369		34.173	0	1	165300	+		87558	25563	60922	61022	97214	97214					0.08945449197199196
VRVWCLRTC	9	Unmodified	_VRVWCLRTC_					0	0	0		nc|ENSG00000165288|Q6RI45-5|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENST00000478415.1_1_X:79999455-80064970:-|nuORF	nc|ENSG00000165288|Q6RI45-5|BRWD3	nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3298950195312	2	568.296796	1134.57904	-1.8672	-0.0010611	3.1987	0.0018178	1.3315	0.00075669	568.2983923801621	90.653	0.50376	90.653	90.384	90.887	0					28	11	3	0	0	0	0.024427	1	11469	11469		26.693	0	1	591110			87559	7394	60923	61023	97215	97215					0.017132580588395285
VRVYMVRAI	9	Unmodified	_VRVYMVRAI_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8301391601562	2	553.828786	1105.64302	-0.066307	-3.6723E-05	2.1645	0.0011988	2.0982	0.001162	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	0.90698	1	10671	10671		31.955	1.4512	1	1623500			87560	10844	60924	61024	97216	97216					0.09442361487435846
VRWGLRVGGR	10	Unmodified	_VRWGLRVGGR_					0	0	0		ENST00000573760.1_1_17:6659397-6661657:+|nuORF	ENST00000573760.1_1_17:6659397-6661657:+|nuORF	ENST00000573760.1_1_17:6659397-6661657:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.3059692382812	2	578.346523	1154.67849	-0.66123	-0.00038242	-1.1142	-0.0006444	-1.7754	-0.0010268	578.3455685410313	75.95	0.18864	75.692	75.596	75.784	-0.25866					7	4	2	0	0	0	0.03519	1	8999	8999		20.947	8.1352	1	32635			87561	17075	60925	61025	97217	97217					0.10734160059473652
VRWHKILNSK	10	Unmodified	_VRWHKILNSK_					0	0	0			REV__ZNF419|p.H354R|1|0.33|ENSG00000105136|chr19:57493618-57493618|A/G|missense_variant	REV__ZNF419|p.H354R|1|0.33|ENSG00000105136|chr19:57493618-57493618|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.55804443359375	3	427.591051	1279.75132	0.33612	0.00014372	-0.31177	-0.00013331	0.024347	1.0411E-05	427.59090361726317	32.328	0.67255	32.091	31.824	32.497	-0.23666					22	15	2	0	0	0	0.03519	1	2257	2257		20.03	15.387	1	139850	+		87562	21495	60926	61026	97218	97218					0.12263869062235244
VRWHKILNSK	10	Unmodified	_VRWHKILNSK_					0	0	0			REV__ZNF419|p.H354R|1|0.33|ENSG00000105136|chr19:57493618-57493618|A/G|missense_variant	REV__ZNF419|p.H354R|1|0.33|ENSG00000105136|chr19:57493618-57493618|A/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	427.591051	1279.75132	0.68241	0.00029179	-0.88273	-0.00037745	-0.20032	-8.5655E-05	427.59064157229574	32.48	0.87975	32.287	31.899	32.779	-0.19261	0.10865	-0.00060883	NaN	30.569	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115390	+		87563	21495	60926	61026							0.12263869062235244
VRWHKILNSK	10	Unmodified	_VRWHKILNSK_					0	0	0			REV__ZNF419|p.H354R|1|0.33|ENSG00000105136|chr19:57493618-57493618|A/G|missense_variant	REV__ZNF419|p.H354R|1|0.33|ENSG00000105136|chr19:57493618-57493618|A/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	427.591051	1279.75132	0.045508	1.9459E-05	-0.068887	-2.9456E-05	-0.023379	-9.9968E-06	427.59091477618523	32.315	0.49878	32.157	31.904	32.403	-0.15772	-0.021417	0.00043514	NaN	30.569	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122250	+		87564	21495	60926	61026							0.12263869062235244
VRWKCLVI	8	Unmodified	_VRWKCLVI_					0	0	0		nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400;EP400|p.N1998Kfs*4|1|0.05|ENSG00000183495|chr12:132037718-132037719|-/A|frameshift_variant	nc|ENSG00000183495|Q96L91-3|EP400	nc|ENSG00000183495|Q96L91-3|EP400	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.7923583984375	2	508.807322	1015.60009	-0.65603	-0.00033379	-3.889	-0.0019787	-4.545	-0.0023125	508.80520857789605	84.178	1.1938	84.178	83.393	84.587	0					44	27	2	0	0	0	0.027866	1	10450	10450		28.254	0	1	141050			87565	9236	60927	61027	97219	97219					0.09291591429996515
VRYDNLLLN	9	Unmodified	_VRYDNLLLN_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|152|3|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|152|3|sense	MSMS	OPSCC_40_ClassI_Rep-3	6	560.3116455078125	2	560.31148	1118.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.979	1	97.814	97.314	98.314	-0.1652								0	0	0	0.1093	1	12112	12112		90.37	9.9152	1		+		87566	36240	60928	61028	97220	97220					0.053848168803369845
VRYENMLAPL	10	Unmodified	_VRYENMLAPL_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.81134033203125	3	402.549753	1204.62743	-0.62704	-0.00025242	2.7906	0.0011233	2.1635	0.00087092	402.5510568968363	29.093	0.64817	28.847	28.363	29.011	-0.24524					21	14	2	0	0	0	0.03519	1	1734	1734		32.751	10.171	1	48806	+		87567	22210	60929	61029	97221	97221					0.03330030179745336
VRYENMLAPL	10	Unmodified	_VRYENMLAPL_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	402.549753	1204.62743	0.093897	3.7798E-05	5.1908	0.0020896	5.2847	0.0021274	402.5516444155321	29.139	0.44541	29.139	28.778	29.223	0	0.20534	0.0023571	NaN	32.751	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75148	+		87568	22210	60929	61029							0.03330030179745336
VRYENMLAPL	10	Unmodified	_VRYENMLAPL_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	402.549753	1204.62743	0.027603	1.1112E-05	4.4045	0.001773	4.4321	0.0017841	402.5515392180083	29.014	0.45303	29.017	28.713	29.166	0.0031376	0.08327	0.0014075	NaN	32.751	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60677	+		87569	22210	60929	61029							0.03330030179745336
VRYENMLAPL	10	Unmodified	_VRYENMLAPL_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	402.549753	1204.62743	2.4033	0.00096745	1.4663	0.00059027	3.8696	0.0015577	402.5501864673273	28.651	0.61777	28.732	28.289	28.907	0.080812	-0.20212	-0.0021408	NaN	32.751	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69157	+		87570	22210	60929	61029							0.03330030179745336
VRYQRRGK	8	Unmodified	_VRYQRRGK_					0	0	0			REV__ENST00000253861.4_1_7:133749426-133749525:+|nuORF	REV__ENST00000253861.4_1_7:133749426-133749525:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.81640625	2	531.817599	1061.62064	-0.11038	-5.8701E-05	-1.4829	-0.00078861	-1.5932	-0.00084732	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	1.0239	1	10591	10591		33.516	1.9858	1	4521600	+		87571	29522	60930	61030	97222	97222					0.09229898134049108
VRYTKMKTAT	10	Unmodified	_VRYTKMKTAT_					0	0	0		nc|ENSG00000112038|P35372-6|OPRM1;nc|ENSG00000112038|P35372-11|OPRM1;nc|ENSG00000112038|P35372-2|OPRM1;nc|ENSG00000112038|P35372-8|OPRM1;ENSG00000112038|ENST00000330432|OPRM1;nc|ENSG00000112038|P35372-4|OPRM1;nc|ENSG00000112038|P35372-7|OPRM1;nc|ENSG00000112038|P35372-5|OPRM1;nc|ENSG00000112038|P35372-9|OPRM1;nc|ENSG00000112038|P35372-3|OPRM1;nc|ENSG00000112038|P35372-10|OPRM1	nc|ENSG00000112038|P35372-6|OPRM1	nc|ENSG00000112038|P35372-6|OPRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	400.5758361816406	3	400.225269	1197.65398	3.2602	0.0013048	3.5042	0.0014025	6.7645	0.0027073	400.56173989791915	18.142	0.19777	17.899	17.726	17.924	-0.24256					5	3	2	0	0	0	0.03519	1	232	232		28.577	15.123	1	3672			87572	18175	60931	61031	97223	97223					0.06305719071065141
VRYTNWAAD	9	Unmodified	_VRYTNWAAD_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.7957153320312	2	548.26453	1094.51451	-0.19363	-0.00010616	0.25239	0.00013837	0.058759	3.2216E-05	548.2644630696717	54.076	0.35618	53.831	53.717	54.073	-0.2453					17	11	2	0	0	0	0.024457	1	5722	5722		29.15	0	1	335940			87573	10942	60932	61032	97224	97224					-0.028969022219598628
VRYTNWAAD	9	Unmodified	_VRYTNWAAD_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	548.26453	1094.51451	-0.49657	-0.00027225	3.3101	0.0018148	2.8135	0.0015426	548.7685282664105	53.438	0.13747	53.438	53.372	53.509	0	-0.26721	0.0032584	NaN	21.96	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71397			87574	10942	60932	61032							-0.028969022219598628
VSAACRGVK	9	Unmodified	_VSAACRGVK_					0	0	0			REV__ENST00000512507.5_1_5:134695871-134696306:-|nuORF	REV__ENST00000512507.5_1_5:134695871-134696306:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.7220153808594	2	445.747462	889.480371	-0.10805	-4.8163E-05	0.97064	0.00043266	0.8626	0.0003845	445.7476431446483	32.567	0.77655	32.409	31.991	32.767	-0.15772					27	18	2	0	0	0	0.024487	1	2284	2284		11.511	3.2797	1	230580	+		87575	34137	60933	61033	97225	97225					0.03120978085439674
VSAACRGVK	9	Unmodified	_VSAACRGVK_					0	0	0			REV__ENST00000512507.5_1_5:134695871-134696306:-|nuORF	REV__ENST00000512507.5_1_5:134695871-134696306:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	445.747462	889.480371	0.24297	0.0001083	0.79115	0.00035265	1.0341	0.00046096	445.7475912403109	32.75	0.92153	32.557	31.899	32.821	-0.19261	0.098576	-6.9484E-05	NaN	19.104	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185670	+		87576	34137	60933	61033							0.03120978085439674
VSAAVMKRQLS	11	Unmodified	_VSAAVMKRQLS_					0	0	0			REV__ENST00000602795.5_1_20:57569750-57570071:+|nuORF	REV__ENST00000602795.5_1_20:57569750-57570071:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.33642578125	2	595.339715	1188.66488	-0.51678	-0.00030766	-3.1313	-0.0018642	-3.6481	-0.0021718	595.3379394122497	109.53	0.44467	109.41	109.22	109.67	-0.12453					64	20	5	0	0	0	1.0624	1	13489	13489		21.686	1.2039	1	2955700	+		87577	35889	60934	61034	97226	97226					0.07809121445347955
VSACHDGDAR	10	Unmodified	_VSACHDGDAR_					0	0	0			REV__nc|ENSG00000172493|P51825|AFF1	REV__nc|ENSG00000172493|P51825|AFF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.822021484375	2	515.722172	1029.42979	-0.66819	-0.0003446	-2.7018	-0.0013934	-3.37	-0.001738	515.7204844760389	56.767	0.46346	56.603	56.35	56.813	-0.16431					16	12	2	0	0	0	0.03519	1	6323	6323		26.693	1.2427	1	187790	+		87578	26678	60935	61035	97227	97227					-0.08374596030239445
VSACVQLCVP	10	Unmodified	_VSACVQLCVP_					0	0	0			REV__ENST00000459722.1_3_X:102841104-102841620:+|nuORF	REV__ENST00000459722.1_3_X:102841104-102841620:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.7816467285156	2	509.756638	1017.49872	-1.0072	-0.00051341	1.9839	0.0010113	0.97673	0.0004979	510.25897158737706	43.884	0.71497	43.74	43.316	44.031	-0.14471					24	19	2	0	0	0	0.03519	1	4149	4149		27.882	4.3595	1	439320	+		87579	32828	60936	61036	97228	97228					-0.009326480548679683
VSAEGVLHVW	10	Unmodified	_VSAEGVLHVW_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.7930908203125	2	548.792924	1095.57129	0.26835	0.00014727	-0.92645	-0.00050843	-0.6581	-0.00036116	548.7924125150761	67.374	1.4414	67.119	66.786	68.227	-0.25516					78	34	4	0	0	0	1.101E-05	6	7748	7728;7737;7748;7760;7774;7787		221.53	123.54	1	12212000			87580	999	60937	61037	97229;97230;97231;97232;97233;97234	97231					0.027331453345368573
VSAEGVLHVW	10	Unmodified	_VSAEGVLHVW_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.7928466796875	2	548.792924	1095.57129	-0.37327	-0.00020485	-0.26516	-0.00014552	-0.63843	-0.00035036	548.7927598387473	67.347	1.3513	67.124	66.778	68.129	-0.22374					80	32	4	0	0	0	1.101E-05	6	7755	7732;7744;7755;7767;7779;7794		221.53	128.34	1	13757000			87581	999	60937	61037	97235;97236;97237;97238;97239;97240	97237					0.027331453345368573
VSAEGVLHVW	10	Unmodified	_VSAEGVLHVW_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.79296875	2	548.792924	1095.57129	-0.63225	-0.00034697	0.0045158	2.4782E-06	-0.62773	-0.0003445	548.7929127654571	67.331	1.3123	67.093	66.796	68.109	-0.23814					85	31	5	0	0	0	1.101E-05	6	7733	7722;7733;7744;7756;7768;7782		221.53	120.86	1	12743000			87582	999	60937	61037	97241;97242;97243;97244;97245;97246	97242					0.027331453345368573
VSAFGLKVL	9	Unmodified	_VSAFGLKVL_					0	0	0		ENST00000564647.5_1_15:66793338-66793401:-|nuORF	ENST00000564647.5_1_15:66793338-66793401:-|nuORF	ENST00000564647.5_1_15:66793338-66793401:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.28125	2	467.292028	932.569503	0.048356	2.2596E-05	3.2919	0.0015383	3.3402	0.0015609	467.29296602136714	45.499	0.33656	45.246	45.055	45.392	-0.25252					16	9	3	0	0	0	0.024487	1	4307	4307		24.203	11.996	1	131620			87583	16897	60938	61038	97247	97247					0.10052136316619453
VSAFLHIPVQ	10	Unmodified	_VSAFLHIPVQ_					0	0	0		CDKAL1|p.Y315S|1|0.28|ENSG00000145996|chr6:21000261-21000261|A/C|missense_variant	CDKAL1|p.Y315S|1|0.28|ENSG00000145996|chr6:21000261-21000261|A/C|missense_variant	CDKAL1|p.Y315S|1|0.28|ENSG00000145996|chr6:21000261-21000261|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.29052734375	2	555.818941	1109.62333	-0.78777	-0.00043786	0.34045	0.00018923	-0.44732	-0.00024863	555.8189099796535	60.455	0.63728	60.279	59.998	60.635	-0.1761					42	15	4	0	0	0	0.03519	1	6754	6754		35.618	11.416	1	1111400			87584	243	60939	61039	97248	97248					0.0729030874831551
VSAFWCGVM	9	Unmodified	_VSAFWCGVM_					0	0	0			REV__ENSG00000189362|ENST00000409150|NEMP2	REV__ENSG00000189362|ENST00000409150|NEMP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7662658691406	2	500.224974	998.435394	-0.43599	-0.00021809	-4.1992	-0.0021005	-4.6352	-0.0023186	500.22273136283656	36.58	0.31332	36.538	36.417	36.73	-0.042454					13	7	2	0	0	0	0.024386	1	2887	2887		33.516	15.253	1	87973	+		87585	28116	60940	61040	97249	97249					-0.06388588772097137
VSAGIQTSF	9	Unmodified	_VSAGIQTSF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	455.2376403808594	2	455.23745	908.460347	0.0083405	3.7969E-06	-0.024917	-1.1343E-05	-0.016577	-7.5464E-06	455.23735226634284	59.134	1.3691	58.946	58.623	59.993	-0.18795					85	34	4	0	0	0	0.01388	4	6509	6509;6521;6533;6546		204.62	47.416	1	9822600			87586	2921	60941	61041	97250;97251;97252;97253	97250					0.0024550562648073537
VSAGIQTSF	9	Unmodified	_VSAGIQTSF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	455.2377014160156	2	455.23745	908.460347	0.35197	0.00016023	-0.42452	-0.00019326	-0.072553	-3.3029E-05	455.2371820932679	59.109	1.1798	58.927	58.628	59.808	-0.18134					85	29	4	0	0	0	0.014034	4	6509	6509;6520;6532;6545		166.68	51.22	1	10117000			87587	2921	60941	61041	97254;97255;97256;97257	97254					0.0024550562648073537
VSAGIQTSF	9	Unmodified	_VSAGIQTSF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	455.237548828125	2	455.23745	908.460347	0.56022	0.00025503	-0.60698	-0.00027632	-0.046761	-2.1287E-05	455.2371020493133	59.199	1.5617	58.958	58.622	60.183	-0.24166					101	39	5	0	0	0	0.014034	4	6521	6509;6521;6533;6545		166.68	52.133	1	8511600			87588	2921	60941	61041	97258;97259;97260;97261	97259					0.0024550562648073537
VSAGQLQPR	9	Unmodified	_VSAGQLQPR_					0	0	0		ENST00000557945.5_1_15:44580961-44581297:+|nuORF	ENST00000557945.5_1_15:44580961-44581297:+|nuORF	ENST00000557945.5_1_15:44580961-44581297:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	478.2682800292969	2	478.269616	954.524678	0.84531	0.00040428	-0.53066	-0.0002538	0.31464	0.00015048	478.2693143749098	101.27	0.55231	101.14	100.86	101.41	-0.13156					27	11	3	0	0	0	0.85329	1	12554	12554		35.618	2.8059	1	433000			87589	16742	60942	61042	97262	97262					0.04559705503265832
VSAGQLQPR	9	Unmodified	_VSAGQLQPR_					0	0	0		ENST00000557945.5_1_15:44580961-44581297:+|nuORF	ENST00000557945.5_1_15:44580961-44581297:+|nuORF	ENST00000557945.5_1_15:44580961-44581297:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	478.269616	954.524678	0.27614	0.00013207	0.20392	9.7527E-05	0.48006	0.0002296	478.2696960327596	101.37	0.55611	101.2	100.92	101.47	-0.17178	0.039055	0.00028685	NaN	35.618	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365670			87590	16742	60942	61042							0.04559705503265832
VSAGTVEYLY	10	Unmodified	_VSAGTVEYLY_					0	0	0		nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB;ACACB|p.A2176Rfs*3|1|0.22|ENSG00000076555|chr12:109260505-109260518|TGGAGCCTACATCG/-|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ACACA|p.N571Ifs*45|1|0.16|ENSG00000278540|chr17:37257817-37257817|T/-|frameshift_variant	nc|ENSG00000076555|O00763-2|ACACB;nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.8082885742188	2	551.276772	1100.53899	-0.40542	-0.0002235	1.9427	0.0010709	1.5372	0.00084744	551.2777488947045	56.58	1.1875	56.413	55.883	57.071	-0.1672					42	30	2	0	0	0	0.03519	1	6078	6078		20.947	6.2828	1	532630			87591	1585;11066	60943	61043	97263	97263					-0.0072568685909573105
VSAHLHVL	8	Unmodified	_VSAHLHVL_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2480163574219	2	438.25852	874.502486	0.76603	0.00033572	0.2455	0.00010759	1.0115	0.00044331	438.2584016335575	33.31	0.69893	33.367	32.916	33.615	0.056572					31	18	2	0	0	0	0.027866	1	2365	2365		20.482	0	1	171760	+		87592	25919	60944	61044	97264	97264					0.060215258255084336
VSAILLTT	8	Unmodified	_VSAILLTT_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1864013671875	2	409.255111	816.49567	-0.49605	-0.00020301	2.5971	0.0010629	2.1011	0.00085987	409.25610303389453	26.992	0.43173	26.836	26.586	27.018	-0.15664					14	9	2	0	0	0	0.027866	1	1428	1428		7.6903	6.2255	1	56344			87593	5133	60945	61045	97265	97265					0.08008168154276518
VSAILLTT	8	Unmodified	_VSAILLTT_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	409.255111	816.49567	-0.29942	-0.00012254	1.4923	0.00061072	1.1929	0.00048818	409.25606483503475	26.963	0.38028	26.721	26.614	26.995	-0.24217	-0.057487	-0.00071572	NaN	7.6903	11	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32027			87594	5133	60945	61045							0.08008168154276518
VSAIVEQSW	9	Unmodified	_VSAIVEQSW_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A;nc|ENSG00000077721|P49459-3|UBE2A;ENST00000499038.2_1_5:133721305-133726041:+|nuORF;ENST00000503080.1_1_5:133723966-133726041:+|nuORF;ENSG00000119048|ENST00000265339|UBE2B	nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000119048|ENST00000265339|UBE2B	ENSG00000119048|ENST00000265339|UBE2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.7626037597656	2	509.763832	1017.51311	-1.502	-0.00076567	1.8346	0.00093521	0.33259	0.00016954	509.76454140463795	65.37	1.0671	65.167	64.777	65.844	-0.20308					63	25	4	0	0	0	0.16638	1	7472	7472		95.815	27.028	1	1332900			87595	1622;3721	60946	61046	97266	97266					0.0050546368928507945
VSAKCKAK	8	Unmodified	_VSAKCKAK_					0	0	0			REV__nc|ENSG00000154556|O94875-7|SORBS2	REV__nc|ENSG00000154556|O94875-7|SORBS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	418.5221862792969	2	417.746931	833.479308	-0.72292	-0.000302	-1.7064	-0.00071285	-2.4293	-0.0010149	417.7458408457863	39.519	0.63343	39.421	38.983	39.616	-0.098755					19	17	2	0	0	0	0.027866	1	3365	3365		21.96	0.25755	1	54166	+		87596	24966	60947	61047	97267	97267					0.0559076371653191
VSAKKGLH	8	Unmodified	_VSAKKGLH_					0	0	0			REV__ENST00000295101.2_1_2:155554859-155555222:+|nuORF	REV__ENST00000295101.2_1_2:155554859-155555222:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2406921386719	2	420.25852	838.502486	1.579	0.00066361	1.9741	0.00082963	3.5532	0.0014932	420.25914817677244	37.177	0.1526	37.177	37.042	37.195	0					5	3	2	0	0	0	0.027866	1	2995	2995		20.482	7.5226	1	81007	+		87597	29973	60948	61048	97268	97268					0.0767752582552248
VSAKRGPVK	9	Unmodified	_VSAKRGPVK_					0	0	0		nc|ENSG00000242715|A6NNP5-5|CCDC169;ENSG00000242715|ENST00000239859|CCDC169	nc|ENSG00000242715|A6NNP5-5|CCDC169	nc|ENSG00000242715|A6NNP5-5|CCDC169	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	470.7838134765625	2	471.298176	940.581799	0.12094	5.7E-05	0.73634	0.00034704	0.85729	0.00040404	471.2960657887387	46.835	0.35097	46.565	46.379	46.73	-0.26939					18	9	3	0	0	0	0.024021	1	4545	4545		32.812	0	1	261610			87598	10800	60949	61049	97269	97269					0.10913172779669367
VSALDVGWAV	10	Unmodified	_VSALDVGWAV_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7923583984375	2	508.7742	1015.53385	-0.12298	-6.2567E-05	-0.10086	-5.1315E-05	-0.22384	-0.00011388	508.77387151836894	68.132	1.1425	68.132	67.682	68.825	0					37	17	3	0	0	0	0.03519	1	8168	8168		23.042	0	1	750770	+		87599	20987	60950	61050	97270	97270					0.026700540689603258
VSALRPVVLL	10	Unmodified	_VSALRPVVLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7717895507812	2	533.852784	1065.69102	-0.58388	-0.00031171	0.036184	1.9317E-05	-0.5477	-0.00029239	533.8530016568942	55.31	0.3313	55.08	54.891	55.222	-0.23087					16	9	2	0	0	0	0.03519	1	5898	5898		20.947	0	1	240320			87600	2126	60951	61051	97271	97271					0.1607975867912046
VSALRPVVLLP	11	Unmodified	_VSALRPVVLLP_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	582.3531494140625	2	582.379166	1162.74378	-0.67401	-0.00039253	0.76152	0.00044349	0.087509	5.0964E-05	582.3814629941876	102.36	0.17169	102.23	102.1	102.28	-0.12666					5	3	2	0	0	0	0.024762	1	12731	12731		31.53	16.665	1	28306			87601	2126	60952	61052	97272	97272					0.16891716741929486
VSALSFILLP	10	Unmodified	_VSALSFILLP_					0	0	0		ENST00000394135.7_1_15:99789787-99791379:-|nuORF	ENST00000394135.7_1_15:99789787-99791379:-|nuORF	ENST00000394135.7_1_15:99789787-99791379:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.80810546875	2	530.326068	1058.63758	-0.88712	-0.00047046	-2.3062	-0.0012231	-3.1934	-0.0016935	530.3247863275053	25.939	0.43253	25.916	25.651	26.083	-0.023088					16	9	2	0	0	0	0.03519	1	1257	1257		16.473	0	1	60211			87602	13481	60953	61053	97273	97273					0.11060961176622186
VSAPEVSRW	9	Unmodified	_VSAPEVSRW_					0	0	0		ENST00000553883.1_1_14:94401004-94406176:-|nuORF;nc|ENSG00000100628|Q96Q27-1|ASB2;ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;ENSG00000100628|ENST00000555019|ASB2	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.7697143554688	2	515.769448	1029.52434	0.0013914	7.1762E-07	0.42602	0.00021973	0.42741	0.00022044	515.7693092428236	50.401	1.0089	50.295	49.856	50.865	-0.10558					68	26	4	0	0	0	0.013924	3	5131	5108;5119;5131		167.23	35.613	1	3801800			87603	138	60954	61054	97274;97275;97276	97276					0.010762857834379247
VSAPEVSRW	9	Unmodified	_VSAPEVSRW_					0	0	0		ENST00000553883.1_1_14:94401004-94406176:-|nuORF;nc|ENSG00000100628|Q96Q27-1|ASB2;ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;ENSG00000100628|ENST00000555019|ASB2	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7692260742188	2	515.769448	1029.52434	0.25468	0.00013136	-0.0054802	-2.8265E-06	0.2492	0.00012853	515.7692844278807	50.66	0.89664	50.383	49.956	50.853	-0.27685					68	23	4	0	0	0	0.034407	3	5142	5142;5153;5165		138.06	42.247	1	4188400			87604	138	60954	61054	97277;97278;97279	97277					0.010762857834379247
VSAPEVSRW	9	Unmodified	_VSAPEVSRW_					0	0	0		ENST00000553883.1_1_14:94401004-94406176:-|nuORF;nc|ENSG00000100628|Q96Q27-1|ASB2;ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;ENSG00000100628|ENST00000555019|ASB2	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.7694702148438	2	515.769448	1029.52434	0.31506	0.0001625	-0.046071	-2.3762E-05	0.26899	0.00013874	515.7692638243243	50.505	1.0834	50.325	49.901	50.984	-0.18071					71	28	4	0	0	0	0.01896	3	5129	5119;5129;5142		150.36	45.615	1	4097000			87605	138	60954	61054	97280;97281;97282	97281					0.010762857834379247
VSAPEVSRW	9	Unmodified	_VSAPEVSRW_					0	0	0		ENST00000553883.1_1_14:94401004-94406176:-|nuORF;nc|ENSG00000100628|Q96Q27-1|ASB2;ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;ENSG00000100628|ENST00000555019|ASB2	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.769448	1029.52434	-0.070626	-3.6427E-05	-1.5022	-0.00077478	-1.5728	-0.00081121	516.2703440043217	50.229	0.36323	50.078	49.924	50.287	-0.1512	-0.13962	-0.0015548	NaN	167.23	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310870			87606	138	60954	61054							0.010762857834379247
VSAPEVSRW	9	Unmodified	_VSAPEVSRW_					0	0	0		ENST00000553883.1_1_14:94401004-94406176:-|nuORF;nc|ENSG00000100628|Q96Q27-1|ASB2;ASB2|p.E527Dfs*39|1|0.1|ENSG00000100628|chr14:93937744-93937744|T/-|frameshift_variant;ENSG00000100628|ENST00000555019|ASB2	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	ENST00000553883.1_1_14:94401004-94406176:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	515.769448	1029.52434	-0.74964	-0.00038664	-0.33274	-0.00017162	-1.0824	-0.00055826	516.2710323969969	49.925	0.57283	50.006	49.737	50.31	0.08099	-0.21163	-0.0003485	NaN	167.23	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318160			87607	138	60954	61054							0.010762857834379247
VSAPGPRPP	9	Unmodified	_VSAPGPRPP_					0	0	0		ENST00000514541.1_1_4:15661507-15683068:-|nuORF	ENST00000514541.1_1_4:15661507-15683068:-|nuORF	ENST00000514541.1_1_4:15661507-15683068:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	439.2480773925781	2	439.248152	876.481751	-0.367	-0.00016121	0.13569	5.9602E-05	-0.23131	-0.0001016	439.24816198999156	33.403	2.0226	33.403	32.186	34.209	0					158	53	5	0	0	0	0.43973	1	2425	2425		63.306	2.3343	1	10783000			87608	15883	60955	61055	97283	97283					0.038569354458559246
VSAPGPRPP	9	Unmodified	_VSAPGPRPP_					0	0	0		ENST00000514541.1_1_4:15661507-15683068:-|nuORF	ENST00000514541.1_1_4:15661507-15683068:-|nuORF	ENST00000514541.1_1_4:15661507-15683068:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	439.2481994628906	2	439.248152	876.481751	-0.48273	-0.00021204	0.22934	0.00010074	-0.25339	-0.0001113	439.2482080932581	33.297	2.3249	33.304	32.139	34.463	0.0066223					174	61	5	0	0	0	0.35646	1	2353	2353		68.787	0	1	11536000			87609	15883	60955	61055	97284	97284					0.038569354458559246
VSAPPLPPPT	10	Unmodified	_VSAPPLPPPT_					0	0	0			REV__ENSG00000122574|ENST00000242140|WIPF3	REV__ENSG00000122574|ENST00000242140|WIPF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	487.293212890625	2	488.279118	974.543683	0.43039	0.00021015	-0.35997	-0.00017577	0.070416	3.4383E-05	488.27882159671816	89.437	1.64	89.299	88.398	90.038	-0.13761					64	38	3	0	0	0	0.03519	1	10978	10978		31.53	12.426	1	345640	+		87610	22653	60956	61056	97285	97285					0.05539242074314643
VSASAAWPLP	10	Unmodified	_VSASAAWPLP_					0	0	0		ENST00000586922.2_1_18:32864420-32870144:-|nuORF	ENST00000586922.2_1_18:32864420-32870144:-|nuORF	ENST00000586922.2_1_18:32864420-32870144:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7667236328125	2	499.768917	997.523281	-0.39822	-0.00019902	-4.4717	-0.0022348	-4.8699	-0.0024338	499.76657757644426	36.5	0.75842	36.538	36.166	36.924	0.038044					83	20	6	0	0	0	0.91051	1	2839	2839		53.351	0.41475	1	7634100			87611	17256	60957	61057	97286	97286					0.02442071414509428
VSASDPDFGLN	11	Unmodified	_VSASDPDFGLN_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.7827758789062	2	561.259111	1120.50367	-1.0767	-0.00060432	3.1577	0.0017723	2.081	0.001168	561.2608700942889	65.14	0.68512	64.937	64.461	65.146	-0.20254					34	16	3	0	0	0	0.024747	1	7392	7392		39.253	12.457	1	257260			87612	10874	60958	61058	97287	97287					-0.051763493868975274
VSASGDVQQTN	11	Unmodified	_VSASGDVQQTN_					0	0	0			REV__ENSG00000088367|ENST00000338074|EPB41L1	REV__ENSG00000088367|ENST00000338074|EPB41L1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	552.3261108398438	2	553.259642	1104.50473	-0.0019636	-1.0864E-06	-2.7353	-0.0015133	-2.7373	-0.0015144	553.2580740197396	54.177	0.51789	53.979	53.769	54.287	-0.19739					22	14	2	0	0	0	0.024759	1	5734	5734		32.751	10.171	1	952420	+		87613	20813	60959	61059	97288	97288					-0.04334135017961671
VSASSLIGAL	10	Unmodified	_VSASSLIGAL_					0	0	0		ENST00000321599.8_2_3:49764036-49764180:-|nuORF	ENST00000321599.8_2_3:49764036-49764180:-|nuORF	ENST00000321599.8_2_3:49764036-49764180:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	459.2709045410156	2	459.26875	916.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.611	1	43.466	42.966	43.966	-0.14471								0	0	0	0.21404	1	4078	4078		87.754	5.0038	1				87614	12209	60960	61060	97289	97289					0.06134651694674176
VSAVATSHLN	10	Unmodified	_VSAVATSHLN_					0	0	0			REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.76629638671875	2	499.766906	997.519259	-0.051563	-2.577E-05	-0.87383	-0.00043671	-0.92539	-0.00046248	499.76634597347083	36.535	1.1256	36.535	35.994	37.12	0					84	30	6	0	0	0	0.48123	1	2923	2923		90.37	13.052	1	7121200	+		87615	36939	60961	61061	97290	97290					0.02039981920813716
VSAVATSHLN	10	Unmodified	_VSAVATSHLN_					0	0	0			REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.7668151855469	2	499.766906	997.519259	-0.75981	-0.00037973	-0.091504	-4.5731E-05	-0.85131	-0.00042546	499.76671733415594	36.393	0.99409	36.351	35.931	36.925	-0.042458					91	26	6	0	0	0	0.37169	2	2876	2864;2876		101.6	5.7855	1	6903200	+		87616	36939	60961	61061	97291;97292	97292					0.02039981920813716
VSAVATSHLN	10	Unmodified	_VSAVATSHLN_					0	0	0			REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7664489746094	2	499.766906	997.519259	-0.39822	-0.00019902	-0.4471	-0.00022345	-0.84533	-0.00042247	499.76657757644426	36.5	0.75842	36.538	36.166	36.924	0.038044					83	20	6	0	0	0	0.77808	1	2862	2862		62.107	1.1355	1	7634100	+		87617	36939	60961	61061	97293	97293					0.02039981920813716
VSAVKWREQAF	11	Unmodified	_VSAVKWREQAF_					0	0	0			REV__ENST00000446190.5_1_12:132599077-132606470:+|nuORF	REV__ENST00000446190.5_1_12:132599077-132606470:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.7660827636719	3	440.906816	1319.69862	-0.090388	-3.9853E-05	-4.4412	-0.0019582	-4.5316	-0.001998	441.23926276710034	37.302	0.3017	37.109	36.927	37.229	-0.193					11	7	2	0	0	0	0.024757	1	2992	2992		50.034	1.432	1	97520	+		87618	32626	60962	61062	97294	97294					0.05155866208747284
VSAVTLGLGL	10	Unmodified	_VSAVTLGLGL_					0	0	0		ENSG00000242574|ENST00000418107|HLA-DMB;ENST00000477537.1_1_6:32903307-32903421:-|nuORF	ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	465.2868347167969	2	465.286943	928.559333	-0.12496	-5.8141E-05	-0.4685	-0.00021799	-0.59346	-0.00027613	465.28662389408925	93.908	1.0143	93.908	93.472	94.486	0					59	24	4	0	0	0	0.60198	1	11940	11940		76.774	5.4784	1	1807600			87619	10799	60963	61063	97295	97295					0.09219528591370363
VSAVVLGCLI	10	Unmodified	_VSAVVLGCLI_					0	0	0		nc|ENSG00000140386|Q9BY12-3|SCAPER;ENSG00000140386|ENST00000563290|SCAPER;ENST00000303521.10_1_15:76673691-77134263:-|nuORF	nc|ENSG00000140386|Q9BY12-3|SCAPER	nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7792053222656	2	487.291171	972.567789	-0.56414	-0.0002749	3.4887	0.0017	2.9245	0.0014251	487.29278344242334	24.329	0.35207	24.329	24.166	24.518	0					16	7	3	0	0	0	0.03519	1	1064	1064		15.642	8.9063	1	129890			87620	5405	60964	61064	97296	97296					0.08040759236359918
VSAVVLGCLI	10	Unmodified	_VSAVVLGCLI_					0	0	0		nc|ENSG00000140386|Q9BY12-3|SCAPER;ENSG00000140386|ENST00000563290|SCAPER;ENST00000303521.10_1_15:76673691-77134263:-|nuORF	nc|ENSG00000140386|Q9BY12-3|SCAPER	nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.77886962890625	2	487.291171	972.567789	-1.1432	-0.00055706	3.7589	0.0018317	2.6157	0.0012746	487.29300067805116	24.329	0.44541	24.282	24.133	24.578	-0.047148					18	9	3	0	0	0	0.03519	1	1063	1063		29.15	12.676	1	109600			87621	5405	60964	61064	97297	97297					0.08040759236359918
VSAVWWNR	8	Unmodified	_VSAVWWNR_					0	0	0			REV__ENSG00000151552|ENST00000281243|QDPR	REV__ENSG00000151552|ENST00000281243|QDPR	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.30328369140625	2	509.266876	1016.5192	-0.13416	-6.8324E-05	0.91323	0.00046508	0.77907	0.00039675	509.2681357721222	26.139	0.11863	26.22	26.131	26.249	0.081291					4	2	2	0	0	0	0.027866	1	1252	1252		20.482	0	1	31012	+		87622	24777	60965	61065	97298	97298					0.011600267114658891
VSAWELIN	8	Unmodified	_VSAWELIN_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.7611083984375	2	466.247818	930.481082	-0.78661	-0.00036675	0.76578	0.00035704	-0.020827	-9.7105E-06	466.24804779525556	44.737	0.43428	44.637	44.472	44.906	-0.099445					16	10	2	0	0	0	0.027866	1	4223	4223		30.504	17.544	1	126740			87623	10947	60966	61066	97299	97299					0.013060960061466176
VSAWELIN	8	Unmodified	_VSAWELIN_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	466.247818	930.481082	-0.52818	-0.00024626	-0.3603	-0.00016799	-0.88848	-0.00041425	466.2475135951899	44.912	0.47395	44.66	44.391	44.865	-0.25252	0.011296	-0.00054284	NaN	16.473	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181260			87624	10947	60966	61066							0.013060960061466176
VSAWPGHS	8	Unmodified	_VSAWPGHS_					0	0	0		ENST00000467534.5_1_17:27945681-27948338:-|nuORF	ENST00000467534.5_1_17:27945681-27948338:-|nuORF	ENST00000467534.5_1_17:27945681-27948338:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	420.2405090332031	2	420.703577	839.392602	0.34126	0.00014357	0.71461	0.00030064	1.0559	0.00044421	420.70377819501607	37.444	0.29016	37.444	37.269	37.559	0					10	7	2	0	0	0	0.027866	1	3068	3068		33.516	8.0654	1	56903			87625	14842	60967	61067	97300	97300					-0.033518995136660124
VSCLLSLL	8	Unmodified	_VSCLLSLL_					0	0	0		DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	424.250244140625	2	424.251514	846.488476	0.10346	4.3893E-05	-2.768	-0.0011743	-2.6646	-0.0011305	424.2503450708961	102.9	3.7499	102.78	100.52	104.27	-0.12783					151	97	3	0	0	0	1.0574	1	12840	12840		26.796	0	1	8549900			87626	662	60968	61068	97301	97301					0.05909112282222395
VSCSLSSSL	9	Unmodified	_VSCSLSSSL_					0	0	0		ENST00000533507.5_1_11:47602194-47606030:+|nuORF	ENST00000533507.5_1_11:47602194-47606030:+|nuORF	ENST00000533507.5_1_11:47602194-47606030:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7144470214844	2	441.715493	881.416433	-0.143	-6.3167E-05	-1.509	-0.00066656	-1.652	-0.00072972	441.7145119181069	31.128	2.6513	31.197	29.518	32.169	0.06896					212	64	6	0	0	0	0.75397	1	2011	2011		42.396	3.59	1	2819600			87627	16318	60969	61069	97302	97302					-0.02901846862152979
VSDFYTLYFQW	11	Unmodified	_VSDFYTLYFQW_					0	0	0			REV__ENSG00000111300|ENST00000261745|NAA25	REV__ENSG00000111300|ENST00000261745|NAA25	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.2377014160156	3	490.230966	1467.67107	-0.82216	-0.00040305	4.0208	0.0019711	3.1987	0.0015681	490.23149959364616	35.549	0.12167	35.334	35.255	35.377	-0.21555					4	2	2	0	0	0	0.024834	1	2701	2701		17.833	7.7292	1	35619	+		87628	21907	60970	61070	97303	97303					-0.04406081842148524
VSDGGWRSF	9	Unmodified	_VSDGGWRSF_					0	0	0			REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF	REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.27734375	2	505.738148	1009.46174	-0.16335	-8.2613E-05	-1.2652	-0.00063987	-1.4286	-0.00072248	505.73728196421155	54.747	0.46802	54.516	54.28	54.748	-0.23087					27	12	3	0	0	0	0.02435	1	5853	5853		42.396	1.8235	1	624420	+		87629	31502	60971	61071	97304	97304					-0.042608602847622024
VSDGGWRSF	9	Unmodified	_VSDGGWRSF_					0	0	0			REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF	REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	505.738148	1009.46174	-0.31002	-0.00015679	-0.8837	-0.00044692	-1.1937	-0.00060371	505.73747278358877	54.568	0.55042	54.422	54.173	54.724	-0.14609	-0.05611	0.00044515	NaN	42.396	30	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507570	+		87630	31502	60971	61071							-0.042608602847622024
VSDGNFSNY	9	Unmodified	_VSDGNFSNY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.7113952636719	2	501.711796	1001.40904	-0.701	-0.0003517	0.30061	0.00015082	-0.40039	-0.00020088	501.71182659627095	48.473	0.54488	48.376	48.076	48.621	-0.097553					42	14	4	0	0	0	0.067814	1	4820	4820		122.18	15.168	1	2068300			87631	9238	60972	61072	97305	97305					-0.09160863138242803
VSDGNFSNY	9	Unmodified	_VSDGNFSNY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	501.711796	1001.40904	-0.94347	-0.00047335	0.49949	0.0002506	-0.44399	-0.00022275	501.71193249170926	48.797	0.71486	48.517	48.183	48.898	-0.27977	0.078087	0.00017652	NaN	122.18	56	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2255600			87632	9238	60972	61072							-0.09160863138242803
VSDGNFSNY	9	Unmodified	_VSDGNFSNY_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	501.711796	1001.40904	-0.46498	-0.00023329	0.13546	6.7963E-05	-0.32952	-0.00016532	501.7117189760022	48.606	0.64673	48.424	48.126	48.773	-0.18206	-0.015046	-0.00018876	NaN	122.18	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2146000			87633	9238	60972	61072							-0.09160863138242803
VSDHKLYTI	9	Unmodified	_VSDHKLYTI_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.7428588867188	2	538.292756	1074.57096	-1.059	-0.00057004	-3.7969	-0.0020438	-4.8559	-0.0026139	538.790803243929	61.629	0.65291	61.372	61.091	61.744	-0.25725					25	15	2	0	0	0	0.024405	1	6858	6858		35.618	1.4457	1	304510	+		87634	20569	60973	61073	97306	97306					0.036657256147236694
VSDHKLYTI	9	Unmodified	_VSDHKLYTI_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.292756	1074.57096	-0.35393	-0.00019052	1.3742	0.0007397	1.0202	0.00054918	538.2929635846979	61.189	0.64647	61.189	60.768	61.414	0	-0.060595	0.001019	NaN	35.618	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302420	+		87635	20569	60973	61073							0.036657256147236694
VSDHKLYTI	9	Unmodified	_VSDHKLYTI_					0	0	0			REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.292756	1074.57096	-0.45238	-0.00024351	2.1755	0.001171	1.7231	0.00092753	538.2932587457522	61.414	0.51855	61.188	60.937	61.455	-0.22663	-0.061698	0.0018817	NaN	35.618	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301480	+		87636	20569	60973	61073							0.036657256147236694
VSDHTIKR	8	Unmodified	_VSDHTIKR_					0	0	0			REV__ENST00000317357.9_1_6:107980419-107980503:+|nuORF	REV__ENST00000317357.9_1_6:107980419-107980503:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	477.7735900878906	2	478.269616	954.524678	0.68127	0.00032583	-3.6817	-0.0017609	-3.0005	-0.001435	478.26769063447125	69.634	1.0516	69.634	68.977	70.029	0					58	26	3	0	0	0	0.027866	1	8347	8347		42.396	0	1	1389200	+		87637	30294	60974	61074	97307	97307					0.045597055032772005
VSDIIDPVAL	10	Unmodified	_VSDIIDPVAL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7689208984375	2	521.294965	1040.57538	-0.26734	-0.00013936	1.5981	0.00083307	1.3307	0.00069371	521.797372561718	55.584	0.46104	55.428	55.093	55.554	-0.15602					17	12	2	0	0	0	0.03519	1	6140	6140		42.396	6.7778	1	120240			87638	1685	60975	61075	97308	97308					0.05671190037605811
VSDIIKRLV	9	Unmodified	_VSDIIKRLV_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	521.7682495117188	2	521.834591	1041.65463	-1.0112	-0.00052767	-0.4487	-0.00023415	-1.4599	-0.00076182	521.834330358042	55.657	0.50629	55.755	55.561	56.067	0.098015					24	13	2	0	0	0	0.023817	1	6066	6066		60.972	21.719	1	255070	+		87639	28263;19723	60976	61076	97309	97309					0.13546881782394848
VSDKGNLMY	9	Oxidation (M)	_VSDKGNLM(Oxidation (M))Y_		VSDKGNLM(1)Y		VSDKGNLM(140)Y	0	0	1		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7474365234375	2	521.747324	1041.4801	-0.77043	-0.00040197	0.036022	1.8794E-05	-0.73441	-0.00038318	521.7476273225781	35.655	0.63775	35.44	35.137	35.775	-0.21556					41	16	3	0	0	0	0.027092	2	2710	2710;2722		143.89	35.799	1	7184200			87640	9231	60977	61077	97310;97311	97310		386			-0.03898486425077863
VSDKGNLMY	9	Oxidation (M)	_VSDKGNLM(Oxidation (M))Y_		VSDKGNLM(1)Y		VSDKGNLM(120)Y	0	0	1		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.7466430664062	2	521.747324	1041.4801	-0.21428	-0.0001118	0.1732	9.0367E-05	-0.04108	-2.1433E-05	521.7472512182635	36.772	1.7438	36.579	35.764	37.508	-0.193					139	45	4	0	0	0	0.067814	7	2885	2876;2885;2897;2909;2923;2936;2947		122.18	33.533	1	3154300			87641	9231	60977	61077	97312;97313;97314;97315;97316;97317;97318	97313		386			-0.03898486425077863
VSDKGNLMY	9	Oxidation (M)	_VSDKGNLM(Oxidation (M))Y_		VSDKGNLM(1)Y		VSDKGNLM(80)Y	0	0	1		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7473754882812	2	521.747324	1041.4801	-0.076061	-3.9684E-05	-0.95566	-0.00049861	-1.0317	-0.0005383	521.7472738317524	35.628	0.73346	35.415	35.115	35.849	-0.21246					47	19	3	0	0	0	0.26966	1	2715	2715		79.713	15.505	1	7569800			87642	9231	60977	61077	97319	97319		386			-0.03898486425077863
VSDKGNLMY	9	Oxidation (M)	_VSDKGNLM(Oxidation (M))Y_		VSDKGNLM(1)Y		VSDKGNLM(110)Y	0	0	1		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7471313476562	2	521.747324	1041.4801	-0.07653	-3.993E-05	-0.11343	-5.918E-05	-0.18996	-9.911E-05	521.7471613517711	36.767	1.8241	36.55	35.647	37.471	-0.21661					153	47	4	0	0	0	0.1158	1	2890	2890		107.01	18.365	1	3314100			87643	9231	60977	61077	97320	97320		386			-0.03898486425077863
VSDKGNLMY	9	Oxidation (M)	_VSDKGNLM(Oxidation (M))Y_		VSDKGNLM(1)Y		VSDKGNLM(82)Y	0	0	1		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7472534179688	2	521.747324	1041.4801	-0.30845	-0.00016093	-0.97363	-0.00050799	-1.2821	-0.00066892	521.7474267986057	35.51	0.69686	35.324	35.023	35.72	-0.18675					43	18	3	0	0	0	0.2508	1	2675	2675		82.241	18.033	1	7258700			87644	9231	60977	61077	97321	97321		386			-0.03898486425077863
VSDKGNLMY	9	Oxidation (M)	_VSDKGNLM(Oxidation (M))Y_		VSDKGNLM(1)Y		VSDKGNLM(120)Y	0	0	1		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7467041015625	2	521.747324	1041.4801	1.2273	0.00064034	-1.4639	-0.00076381	-0.23665	-0.00012347	521.7464215198685	36.73	1.8789	36.52	35.63	37.509	-0.2092					155	48	5	0	0	0	0.077175	7	2879	2857;2867;2879;2890;2904;2917;2928		118.74	33.828	1	3288000			87645	9231	60977	61077	97322;97323;97324;97325;97326;97327;97328	97324		386			-0.03898486425077863
VSDKGNLMY	9	Unmodified	_VSDKGNLMY_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.7496948242188	2	513.749867	1025.48518	-0.36558	-0.00018782	0.1485	7.6294E-05	-0.21708	-0.00011152	513.7498611187547	41.177	1.3118	41.041	40.712	42.024	-0.13554					84	34	4	0	0	0	0.12914	4	3608	3608;3617;3630;3643		104.06	36.522	1	6464500			87646	9231	60977	61078	97329;97330;97331;97332	97329					-0.026541825624462945
VSDKGNLMY	9	Unmodified	_VSDKGNLMY_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.7498779296875	2	513.749867	1025.48518	-0.30242	-0.00015537	0.091161	4.6834E-05	-0.21126	-0.00010853	513.7498310736831	41.368	1.2027	41.14	40.807	42.01	-0.2278					88	31	5	0	0	0	0.077175	4	3625	3625;3634;3646;3658		118.74	47.365	1	6654000			87647	9231	60977	61078	97333;97334;97335;97336	97333					-0.026541825624462945
VSDKGNLMY	9	Unmodified	_VSDKGNLMY_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.7500610351562	2	513.749867	1025.48518	-0.58683	-0.00030148	0.33877	0.00017404	-0.24806	-0.00012744	513.7499445822111	41.407	1.2916	41.177	40.809	42.101	-0.23029					78	34	4	0	0	0	0.077175	4	3633	3625;3633;3646;3659		118.74	42.929	1	6601100			87648	9231	60977	61078	97337;97338;97339;97340	97338					-0.026541825624462945
VSDKTLSFY	9	Unmodified	_VSDKTLSFY_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2725219726562	2	530.27149	1058.52843	-0.50935	-0.00027009	0.56363	0.00029888	0.054283	2.8785E-05	530.271597718083	54.603	0.91452	54.457	54.208	55.123	-0.14609					62	24	4	0	0	0	0.086035	3	5826	5810;5815;5826		115.49	41.322	1	2541200			87649	1019	60978	61079	97341;97342;97343	97343					0.0015033048648547265
VSDKTLSFY	9	Unmodified	_VSDKTLSFY_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2733764648438	2	530.27149	1058.52843	-0.484	-0.00025665	0.28686	0.00015211	-0.19714	-0.00010454	530.2714851788244	54.738	1.0424	54.507	54.246	55.288	-0.23087					66	29	4	0	0	0	0.03201	1	5833	5833		139.97	59.516	1	2723500			87650	1019	60978	61079	97344	97344					0.0015033048648547265
VSDKTLSFY	9	Unmodified	_VSDKTLSFY_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2;ENST00000465687.1_1_3:88367275-88367665:+|nuORF	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2738647460938	2	530.27149	1058.52843	0.8242	0.00043705	-0.98777	-0.00052379	-0.16357	-8.6737E-05	530.2708060178555	54.712	0.8824	54.505	54.197	55.08	-0.20613					60	23	4	0	0	0	0.062622	1	5814	5814		124.08	56.586	1	2587700			87651	1019	60978	61079	97345	97345					0.0015033048648547265
VSDPTSGLDF	10	Unmodified	_VSDPTSGLDF_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2421875	2	519.242929	1036.47131	-1.0553	-0.00054798	0.6266	0.00032536	-0.42874	-0.00022262	519.2431109139284	69.045	0.99187	68.784	68.26	69.252	-0.26166					48	23	3	0	0	0	0.55353	1	7998	7998		82.241	21.947	1	963690			87652	10488	60979	61080	97346	97346					-0.04547136789915385
VSDPTSGLDF	10	Unmodified	_VSDPTSGLDF_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2420654296875	2	519.242929	1036.47131	0.48036	0.00024942	-0.78539	-0.00040781	-0.30503	-0.00015839	519.2422381891073	69.026	1.0998	68.783	68.266	69.366	-0.24278					62	26	5	0	0	0	0.62431	1	8011	8011		74.255	2.3776	1	1027200			87653	10488	60979	61080	97347	97347					-0.04547136789915385
VSDPTSGLDF	10	Unmodified	_VSDPTSGLDF_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2420654296875	2	519.242929	1036.47131	0.097152	5.0446E-05	-0.61954	-0.00032169	-0.52239	-0.00027125	519.2424560343043	69.012	1.0237	68.781	68.275	69.299	-0.23048					51	24	3	0	0	0	0.64538	1	7986	7986		71.877	5.4482	1	1086100			87654	10488	60979	61080	97348	97348					-0.04547136789915385
VSDPVDLL	8	Unmodified	_VSDPVDLL_					0	0	0		ENST00000608279.1_1_2:133104668-133104761:-|nuORF	ENST00000608279.1_1_2:133104668-133104761:-|nuORF	ENST00000608279.1_1_2:133104668-133104761:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	429.2364501953125	2	429.234376	856.454199	0.098637	4.2339E-05	3.1884	0.0013686	3.287	0.0014109	429.2356568746155	64.058	1.0185	63.807	63.372	64.39	-0.25141					63	27	3	0	0	0	1.0239	1	7503	7503		33.516	0.022601	1	1779000			87655	17589	60980	61081	97349	97349					0.02022987394957454
VSDRVTVLY	9	Unmodified	_VSDRVTVLY_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;ENST00000556300.6_1_14:74417008-74425067:+|nuORF	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.29345703125	2	526.292756	1050.57096	-0.90053	-0.00047394	0.5407	0.00028457	-0.35982	-0.00018937	526.2930009797254	52.281	0.69477	52.162	51.904	52.599	-0.11875					52	17	4	0	0	0	0.14181	2	5422	5422;5435		101.25	29.875	1	5049700			87656	3762	60981	61082	97350;97351	97350					0.04769725614710296
VSDRVTVLY	9	Unmodified	_VSDRVTVLY_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;ENST00000556300.6_1_14:74417008-74425067:+|nuORF	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.2926025390625	2	526.292756	1050.57096	-0.798	-0.00041998	0.36255	0.00019081	-0.43545	-0.00022917	526.2928547483266	52.561	0.80869	52.292	51.944	52.752	-0.26903					56	20	4	0	0	0	0.15388	3	5464	5441;5452;5464		98.582	29.795	1	5014800			87657	3762	60981	61082	97352;97353;97354	97354					0.04769725614710296
VSDRVTVLY	9	Unmodified	_VSDRVTVLY_					0	0	0		nc|ENSG00000119723|Q9Y2Z9-2|COQ6;nc|ENSG00000119723|Q9Y2Z9-3|COQ6;ENSG00000119723|ENST00000334571|COQ6;ENST00000557584.5_1_14:74417012-74426158:+|nuORF;ENST00000556300.6_1_14:74417008-74425067:+|nuORF	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	nc|ENSG00000119723|Q9Y2Z9-2|COQ6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.292724609375	2	526.292756	1050.57096	-0.11681	-6.1474E-05	-0.24723	-0.00013012	-0.36404	-0.00019159	526.2925802064215	52.397	0.79658	52.213	51.963	52.759	-0.18404					51	19	4	0	0	0	0.20652	2	5446	5433;5446		88.177	16.321	1	5057400			87658	3762	60981	61082	97355;97356	97356					0.04769725614710296
VSDSCWGNR	9	Unmodified	_VSDSCWGNR_					0	0	0			REV__ENST00000429541.6_1_11:3392284-3398995:-|nuORF	REV__ENST00000429541.6_1_11:3392284-3398995:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2536010742188	2	512.219266	1022.42398	-0.012	-6.1465E-06	2.5183	0.0012899	2.5063	0.0012838	512.2202050800892	54.244	0.45301	54.097	53.889	54.342	-0.14724					19	12	2	0	0	0	0.024374	1	5870	5870		40.778	0	1	116210	+		87659	32339	60982	61083	97357	97357					-0.08633694541879322
VSDSGIPIIY	10	Unmodified	_VSDSGIPIIY_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.2882080078125	2	532.28714	1062.55973	0.24185	0.00012874	0.21362	0.00011371	0.45548	0.00024245	532.2869500574736	77.253	0.69685	77.011	76.623	77.32	-0.24232					39	17	3	0	0	0	0.84306	1	9188	9188		57.811	4.4598	1	606090	+		87660	20103	60983	61084	97358	97358					0.03094903520582193
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.7586059570312	2	537.758746	1073.50294	-0.77	-0.00041408	0.4664	0.00025081	-0.30361	-0.00016327	537.7589292271304	39.409	1.2764	39.244	38.898	40.174	-0.16459					83	33	4	0	0	0	0.014454	5	3352	3320;3328;3340;3352;3365		204.62	125.17	1	11375000			87661	1601	60984	61085	97359;97360;97361;97362;97363	97362					-0.03087144035930578
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7578125	2	537.758746	1073.50294	-0.78491	-0.00042209	0.24513	0.00013182	-0.53978	-0.00029027	537.7588816271472	39.547	1.4414	39.324	38.857	40.298	-0.22311					104	37	6	0	0	0	0.013337	5	3331	3331;3340;3351;3363;3375		219.56	128.96	1	10162000			87662	1601	60984	61085	97364;97365;97366;97367;97368	97364					-0.03087144035930578
VSDSKQFTY	9	Unmodified	_VSDSKQFTY_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.758056640625	2	537.758746	1073.50294	-0.7763	-0.00041746	0.34074	0.00018323	-0.43556	-0.00023423	537.7587869479179	39.526	1.5063	39.301	38.771	40.277	-0.2257					145	39	8	0	0	0	0.0090779	5	3352	3319;3328;3339;3352;3365		235.12	136.54	1	10974000			87663	1601	60984	61085	97369;97370;97371;97372;97373	97372					-0.03087144035930578
VSDTFFLI	8	Unmodified	_VSDTFFLI_					0	0	0		ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.2927551269531	2	471.252569	940.490584	0.61484	0.00028975	3.9517	0.0018623	4.5666	0.002152	471.254171596817	50.131	0.22205	50.212	50.054	50.276	0.080994					10	6	2	0	0	0	0.027866	1	5141	5141		54.765	7.1073	1	115460			87664	5256	60985	61086	97374	97374					0.017958642916710232
VSDVTERYP	9	Unmodified	_VSDVTERYP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2636108398438	2	533.264196	1064.51384	-0.42324	-0.0002257	-0.5866	-0.00031281	-1.0098	-0.00053851	533.2638043270586	30.812	0.69787	30.66	30.426	31.124	-0.15231					29	16	2	0	0	0	0.4752	1	1975	1975		60.972	6.2496	1	1032900	+		87665	20901	60986	61087	97375	97375					-0.015837416616705013
VSDVTERYP	9	Unmodified	_VSDVTERYP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.264196	1064.51384	-1.5091	-0.00080473	1.1481	0.00061222	-0.361	-0.00019251	533.2646838864105	30.816	0.95879	30.816	30.384	31.343	0	0.14675	0.0014332	NaN	60.972	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363970	+		87666	20901	60986	61087							-0.015837416616705013
VSDVTERYP	9	Unmodified	_VSDVTERYP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.264196	1064.51384	-0.77769	-0.00041471	0.78146	0.00041673	0.0037768	2.014E-06	533.2645391592715	30.771	0.7581	30.783	30.541	31.299	0.011799	0.11318	0.0010422	NaN	60.972	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303460	+		87667	20901	60986	61087							-0.015837416616705013
VSDVTERYP	9	Unmodified	_VSDVTERYP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	533.264196	1064.51384	-0.96791	-0.00051615	0.88309	0.00047092	-0.084819	-4.5231E-05	533.2645156659498	30.448	0.6669	30.522	30.378	31.045	0.074314	-0.14754	0.0011506	NaN	60.972	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319320	+		87668	20901	60986	61087							-0.015837416616705013
VSDVTERYP	9	Unmodified	_VSDVTERYP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	533.264196	1064.51384	-0.60349	-0.00032182	-0.27367	-0.00014594	-0.87717	-0.00046776	533.263944344723	30.876	0.74673	30.635	30.326	31.073	-0.24109	-0.034407	-8.3161E-05	NaN	60.972	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	896070	+		87669	20901	60986	61087							-0.015837416616705013
VSDVTERYP	9	Unmodified	_VSDVTERYP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	533.264196	1064.51384	-0.98638	-0.000526	-0.0068438	-3.6496E-06	-0.99323	-0.00052965	533.2641522608016	30.78	0.7023	30.602	30.366	31.069	-0.17818	-0.068061	0.00020142	NaN	60.972	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	908290	+		87670	20901	60986	61087							-0.015837416616705013
VSDVTERYP	9	Unmodified	_VSDVTERYP_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	533.264196	1064.51384	-0.42324	-0.0002257	-0.5866	-0.00031281	-1.0098	-0.00053851	533.2638043270586	30.812	0.69787	30.66	30.426	31.124	-0.15231	-0.0099284	-0.00041691	NaN	60.972	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1032900	+		87671	20901	60986	61087							-0.015837416616705013
VSDYLRQSY	9	Unmodified	_VSDYLRQSY_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.7767944335938	2	565.77747	1129.54039	0.059189	3.3488E-05	-0.4601	-0.00026031	-0.40091	-0.00022683	565.7771483725376	46.265	0.90374	46.168	45.741	46.645	-0.096649					61	24	4	0	0	0	0.014475	3	4466	4440;4453;4466		199.7	100.33	1	7551200			87672	127;9786	60987	61088	97376;97377;97378	97378					-0.019200527703333137
VSDYLRQSY	9	Unmodified	_VSDYLRQSY_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.7771606445312	2	565.77747	1129.54039	-0.053588	-3.0319E-05	-0.52042	-0.00029444	-0.57401	-0.00032476	565.7771511387613	46.624	0.88809	46.363	45.815	46.704	-0.26118					97	23	8	0	0	0	0.012922	5	4483	4471;4483;4493;4505;4518		185.72	86.343	1	7692100			87673	127;9786	60987	61088	97379;97380;97381;97382;97383	97380					-0.019200527703333137
VSDYLRQSY	9	Unmodified	_VSDYLRQSY_					0	0	0		ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;ARID2|p.H641Sfs*66|1|0.27|ENSG00000189079|chr12:45850039-45850040|-/C|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.I1263Lfs*32|1|0.75|ENSG00000189079|chr12:45851907-45851907|A/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2	nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.7769775390625	2	565.77747	1129.54039	-0.6943	-0.00039282	-0.10823	-6.1235E-05	-0.80253	-0.00045405	565.7773460404266	46.431	0.70537	46.229	45.93	46.635	-0.20226					68	19	5	0	0	0	0.012922	4	4455	4443;4455;4467;4480		185.72	86.343	1	10230000			87674	127;9786	60987	61088	97384;97385;97386;97387	97385					-0.019200527703333137
VSEENKVKN	9	Unmodified	_VSEENKVKN_					0	0	0		nc|ENSG00000114805|Q4KWH8-2|PLCH1;PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7904052734375	2	523.77747	1045.54039	0.33354	0.0001747	4.3384	0.0022724	4.672	0.0024471	523.7798192679422	84.139	0.47664	83.936	83.776	84.253	-0.20329					16	10	2	0	0	0	0.024381	1	10178	10178		29.15	1.2673	1	62889			87675	3386	60988	61089	97388	97388					0.019439472296880922
VSEENKVKN	9	Unmodified	_VSEENKVKN_					0	0	0		nc|ENSG00000114805|Q4KWH8-2|PLCH1;PLCH1|p.G1645Vfs*47|1|0.2|ENSG00000114805|chr3:155481116-155481116|C/-|frameshift_variant;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7893676757812	2	523.77747	1045.54039	0.7072	0.00037042	3.5846	0.0018775	4.2918	0.002248	524.2806684164948	84.171	0.69098	84.012	83.714	84.405	-0.15868					21	15	2	0	0	0	0.024457	1	10179	10179		37.159	14.117	1	76989			87676	3386	60988	61089	97389	97389					0.019439472296880922
VSEENRLNKI	10	Unmodified	_VSEENRLNKI_					0	0	0			REV__ENST00000513216.5_3_4:68338325-68358532:-|nuORF	REV__ENST00000513216.5_3_4:68338325-68358532:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	600.7552490234375	2	601.330402	1200.64625	0.78385	0.00047135	3.0881	0.001857	3.8719	0.0023283	601.3321443915327	58.927	0.61218	58.74	58.5	59.113	-0.18705					33	16	3	0	0	0	0.03519	1	6684	6684		58.23	0	1	541260	+		87677	24390	60989	61090	97390	97390					0.053952830751541114
VSEERGAPR	9	Unmodified	_VSEERGAPR_					0	0	0		ENST00000520105.5_1_8:142441153-142441459:+|nuORF	ENST00000520105.5_1_8:142441153-142441459:+|nuORF	ENST00000520105.5_1_8:142441153-142441459:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2938232421875	2	500.762155	999.509757	0.060295	3.0193E-05	3.7113	0.0018585	3.7716	0.0018887	500.7638879154205	50.1	0.78516	49.919	49.532	50.317	-0.18071					37	20	3	0	0	0	0.024381	1	5128	5128		45.952	16.802	1	1016100			87678	15972	60990	61091	97391	97391					0.009982136352846283
VSEFGASRVW	10	Unmodified	_VSEFGASRVW_					0	0	0		ENST00000478298.5_1_3:127395387-127395988:+|nuORF;ENST00000464431.1_1_3:127395769-127395988:+|nuORF	ENST00000478298.5_1_3:127395387-127395988:+|nuORF	ENST00000478298.5_1_3:127395387-127395988:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	568.80859375	2	569.288005	1136.56146	-0.30052	-0.00017108	2.2332	0.0012713	1.9327	0.0011002	569.2905666896598	76.976	0.24931	76.807	76.61	76.859	-0.16854					7	5	2	0	0	0	0.03519	1	9128	9128		26.693	4.733	1	81468			87679	14765	60991	61092	97392	97392					-0.0013604267080609134
VSELVCQTV	9	Unmodified	_VSELVCQTV_					0	0	0			REV__nc|ENSG00000262246|P57737-2|CORO7	REV__nc|ENSG00000262246|P57737-2|CORO7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	489.2927551269531	2	489.252243	976.489932	-2.1934	-0.0010731	-3.0517	-0.001493	-5.2451	-0.0025662	489.2517814610047	60.417	0.55722	60.496	60.127	60.684	0.078884					22	14	2	0	0	0	0.024319	1	6894	6894		47.657	0	1	363710	+		87680	29121	60992	61093	97393	97393					0.0007470158029718732
VSEQHVKAT	9	Unmodified	_VSEQHVKAT_					0	0	0			REV__ENSG00000106771|ENST00000374586|TMEM245	REV__ENSG00000106771|ENST00000374586|TMEM245	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7662658691406	2	499.766906	997.519259	-0.39822	-0.00019902	-0.4471	-0.00022345	-0.84533	-0.00042247	499.76657757644426	36.5	0.75842	36.538	36.166	36.924	0.038044					83	20	6	0	0	0	0.23085	1	2875	2875		84.916	5.2029	1	7634100	+		87681	21641	60993	61094	97394	97394					0.020399819208023473
VSESRAPGPV	10	Unmodified	_VSESRAPGPV_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	499.7666015625	2	499.766906	997.519259	-0.39822	-0.00019902	-0.4471	-0.00022345	-0.84533	-0.00042247	499.76657757644426	36.5	0.75842	36.538	36.166	36.924	0.038044					83	20	6	0	0	0	0.57594	1	2850	2850		79.713	0.26157	1	7634100	+		87682	28866	60994	61095	97395	97395					0.02039981920813716
VSEVPPPVLKV	11	Unmodified	_VSEVPPPVLKV_					0	0	0			REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	REV__nc|ENSG00000112983|Q9H0E9-2|BRD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3534545898438	2	582.355357	1162.69616	0.45576	0.00026541	-3.8351	-0.0022334	-3.3793	-0.001968	582.3530460378859	102.36	1.1668	102.35	101.97	103.14	-0.0054474					95	27	7	0	0	0	1.0017	1	13054	13054		36.447	6.129	1	8508600	+		87683	22033	60995	61096	97396	97396					0.1213201775105972
VSEVRLNLD	9	Unmodified	_VSEVRLNLD_					0	0	0		ENST00000451081.5_1_7:107545401-107546727:+|nuORF	ENST00000451081.5_1_7:107545401-107546727:+|nuORF	ENST00000451081.5_1_7:107545401-107546727:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2692260742188	2	522.787838	1043.56112	-0.33393	-0.00017457	-1.1434	-0.00059774	-1.4773	-0.00077232	522.7883570942901	41.869	0.66735	41.746	41.527	42.195	-0.12299					43	17	4	0	0	0	0.024405	1	3749	3749		20.947	0	1	504100			87684	14514	60996	61097	97397	97397					0.04108537609317864
VSEVSSLNY	9	Unmodified	_VSEVSSLNY_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	499.2455749511719	2	499.245472	996.476391	-0.37847	-0.00018895	0.026164	1.3062E-05	-0.35231	-0.00017589	499.245350899477	54.587	0.73265	54.441	54.141	54.873	-0.14609					55	19	4	0	0	0	0.067814	3	5821	5808;5821;5834		122.18	50.798	1	4319300			87685	3602;37837	60997	61098	97398;97399;97400	97399					-0.021988329272744522
VSEVSSLNY	9	Unmodified	_VSEVSSLNY_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.2455749511719	2	499.245472	996.476391	-0.089665	-4.4765E-05	-0.39386	-0.00019663	-0.48353	-0.0002414	499.24519900634607	54.741	0.85089	54.51	54.181	55.032	-0.23087					61	23	4	0	0	0	0.03849	2	5844	5832;5844		134.81	48.012	1	4189900			87686	3602;37837	60997	61098	97401;97402	97402					-0.021988329272744522
VSEVSSLNY	9	Unmodified	_VSEVSSLNY_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.S814Pfs*21|1|0.27|ENSG00000117000|chr1:40237141-40237141|C/-|frameshift_variant;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF;RLF-SMAP2|1|fusion	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	499.24560546875	2	499.245472	996.476391	0.56534	0.00028224	-1.0013	-0.0004999	-0.43597	-0.00021765	499.2448605795163	54.723	0.98558	54.517	54.159	55.145	-0.20613					61	26	4	0	0	0	0.014988	3	5820	5808;5820;5833		161.9	82.447	1	4220500			87687	3602;37837	60997	61098	97403;97404;97405	97404					-0.021988329272744522
VSFAEKNGW	9	Unmodified	_VSFAEKNGW_					0	0	0		ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2557983398438	2	519.256174	1036.49779	-0.071245	-3.6994E-05	-0.0082819	-4.3004E-06	-0.079527	-4.1295E-05	519.2560840884943	50.292	0.86121	50.187	49.894	50.755	-0.10558					54	22	3	0	0	0	0.012289	3	5118	5094;5105;5118		227.71	112.22	1	5408300			87688	7247	60998	61099	97406;97407;97408	97408					-0.01899403107904618
VSFAEKNGW	9	Unmodified	_VSFAEKNGW_					0	0	0		ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2557983398438	2	519.256174	1036.49779	0.37615	0.00019532	-0.39172	-0.0002034	-0.015569	-8.0845E-06	519.2559016808083	50.593	0.82077	50.313	49.992	50.813	-0.27977					51	21	4	0	0	0	0.015064	4	5125	5125;5135;5147;5159		211.39	77.576	1	6323500			87689	7247	60998	61099	97409;97410;97411;97412	97409					-0.01899403107904618
VSFAEKNGW	9	Unmodified	_VSFAEKNGW_					0	0	0		ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2556762695312	2	519.256174	1036.49779	0.40773	0.00021172	-0.44103	-0.00022901	-0.033301	-1.7292E-05	519.2559050062329	50.418	0.78424	50.238	49.939	50.723	-0.18071					57	20	4	0	0	0	0.013293	4	5100	5100;5111;5123;5136		221.33	87.514	1	6425700			87690	7247	60998	61099	97413;97414;97415;97416	97413					-0.01899403107904618
VSFAEKNGW	9	Unmodified	_VSFAEKNGW_					0	0	0		ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	ENSG00000164258|ENST00000296684|NDUFS4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.256174	1036.49779	-0.040873	-2.1223E-05	0.62598	0.00032504	0.5851	0.00030382	519.7579531477443	50.213	0.13306	50.294	50.211	50.344	0.08099	0.035812	0.00082391	NaN	227.71	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61993			87691	7247	60998	61099							-0.01899403107904618
VSFAFTQLRKI	11	Unmodified	_VSFAFTQLRKI_					0	0	0			REV__nc|ENSG00000196408|Q8NFA2-4|NOXO1	REV__nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.257080078125	3	437.259079	1308.75541	0.65841	0.0002879	-4.2667	-0.0018657	-3.6083	-0.0015778	437.2572333778059	95.546	2.1374	95.424	94.259	96.396	-0.12251					102	49	3	0	0	0	1.0684	1	11832	11832		20.03	0.7678	1	349580	+		87692	28179	60999	61100	97417	97417					0.11337913765282792
VSFATKGL	8	Unmodified	_VSFATKGL_					0	0	0			REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.7399597167969	2	411.739628	821.464704	-0.57385	-0.00023628	0.91233	0.00037564	0.33848	0.00013936	411.73991697001367	43.188	0.66911	42.962	42.675	43.344	-0.22597					44	17	4	0	0	0	0.94517	1	3925	3925		45.952	3.5558	1	1254000	+		87693	33589	61000	61101	97418	97418					0.04683014840054511
VSFATKGL	8	Unmodified	_VSFATKGL_					0	0	0			REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	411.739628	821.464704	0.0084928	3.4968E-06	0.3889	0.00016013	0.3974	0.00016362	411.7396799553684	42.986	0.67711	42.873	42.576	43.253	-0.11253	-0.047278	-0.0002138	NaN	45.952	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1522900	+		87694	33589	61000	61101							0.04683014840054511
VSFATKGL	8	Unmodified	_VSFATKGL_					0	0	0			REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	411.739628	821.464704	-0.18477	-7.6076E-05	0.73384	0.00030215	0.54907	0.00022608	411.7397579309635	43.163	0.7855	42.926	42.6	43.385	-0.23736	0.0055524	7.0248E-05	NaN	45.952	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1281700	+		87695	33589	61000	61101							0.04683014840054511
VSFATKGL	8	Unmodified	_VSFATKGL_					0	0	0			REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	411.739628	821.464704	-0.57385	-0.00023628	0.91233	0.00037564	0.33848	0.00013936	411.73991697001367	43.188	0.66911	42.962	42.675	43.344	-0.22597	0.041726	0.00021723	NaN	45.952	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254000	+		87696	33589	61000	61101							0.04683014840054511
VSFCYHRG	8	Unmodified	_VSFCYHRG_					0	0	0			REV__MTMR14|p.D68H|1|0.21|ENSG00000163719|chr3:9653663-9653663|G/C|missense_variant	REV__MTMR14|p.D68H|1|0.21|ENSG00000163719|chr3:9653663-9653663|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.2701110839844	2	484.723987	967.433421	-0.49402	-0.00023946	2.1166	0.001026	1.6226	0.00078651	484.72518128134556	27.164	0.36167	27.151	26.953	27.314	-0.012983					17	9	2	0	0	0	0.027866	1	1463	1463		13.775	1.5685	1	219760	+		87697	36399	61001	61102	97419	97419					-0.05159881465692706
VSFETGNDTL	10	Unmodified	_VSFETGNDTL_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.2886962890625	2	541.753661	1081.49277	-1.3349	-0.00072321	1.5586	0.00084438	0.22367	0.00012117	541.7543053386207	65.125	0.41707	65.125	64.909	65.326	0					19	11	3	0	0	0	0.03519	1	7673	7673		47.657	26.71	1	285100	+		87698	23827	61002	61103	97420	97420					-0.044717517611843505
VSFFALPAGI	10	Unmodified	_VSFFALPAGI_					0	0	0		ENSG00000184156|ENST00000388996|KCNQ3;ENST00000519589.1_1_8:133153289-133492518:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	ENSG00000184156|ENST00000388996|KCNQ3;nc|ENSG00000075043|O43526-4|KCNQ2	ENSG00000184156|ENST00000388996|KCNQ3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.28216552734375	2	511.289485	1020.56442	-0.59976	-0.00030665	-3.8389	-0.0019628	-4.4386	-0.0022694	511.2875061730066	56.396	0.76292	56.231	55.843	56.606	-0.16431					43	16	4	0	0	0	0.03519	1	6209	6209		30.504	0	1	1788300			87699	9309;1541	61003	61104	97421	97421					0.054958324539938985
VSFFFLSF	8	Unmodified	_VSFFFLSF_					0	0	0		ENST00000555787.1_1_14:90734518-90735894:+|nuORF;nc|ENSG00000185499|P15941-9|MUC1;nc|ENSG00000185499|P15941-8|MUC1;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-5|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1;nc|ENSG00000185499|P15941-13|MUC1	ENST00000555787.1_1_14:90734518-90735894:+|nuORF;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-13|MUC1	ENST00000555787.1_1_14:90734518-90735894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.7745361328125	2	497.257654	992.500755	0.3143	0.00015629	2.6108	0.0012982	2.9251	0.0014545	497.2587522569726	73.039	0.49317	72.758	72.547	73.04	-0.28124					20	11	2	0	0	0	0.027866	1	8907	8907		52.299	23.15	1	194690			87700	16692;9445;18592	61004	61105	97422	97422					0.00420472016912754
VSFGGSELIS	10	Unmodified	_VSFGGSELIS_					0	0	0			REV__ENSG00000144567|ENST00000430297|RETREG2	REV__ENSG00000144567|ENST00000430297|RETREG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	498.2560119628906	2	498.25584	994.497126	-0.81343	-0.0004053	-0.23751	-0.00011834	-1.0509	-0.00052364	498.2558453259735	43.625	0.96711	43.481	43.131	44.099	-0.14471					112	26	7	0	0	0	0.57825	1	4099	4099		79.451	2.1334	1	12614000	+		87701	24343	61005	61106	97423	97423					-0.0003424254761057455
VSFGSPCSIN	10	Carbamidomethyl (C)	_VSFGSPC(Carbamidomethyl (C))SIN_	VSFGSPC(1)SIN		VSFGSPC(73)SIN		0	1	0		ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2426147460938	2	534.244949	1066.47534	-0.62729	-0.00033513	-1.9161	-0.0010237	-2.5434	-0.0013588	534.243492822023	56.332	0.89937	56.175	55.748	56.648	-0.15655					35	22	3	0	0	0	0.6365	1	6084	6084		72.879	8.672	1	4868700			87702	3308	61006	61107	97424	97424	42				-0.05523370567834718
VSFGSPCSIN	10	Carbamidomethyl (C)	_VSFGSPC(Carbamidomethyl (C))SIN_	VSFGSPC(1)SIN		VSFGSPC(62)SIN		0	1	0		ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.242431640625	2	534.244949	1066.47534	-0.22359	-0.00011945	-2.5706	-0.0013733	-2.7942	-0.0014928	534.243299838766	56.37	1.06	56.154	55.598	56.658	-0.21607					46	27	3	0	0	0	0.78438	1	6084	6084		61.691	10.499	1	5677700			87703	3308	61006	61107	97425	97425	42				-0.05523370567834718
VSFHNTFPL	9	Unmodified	_VSFHNTFPL_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|112|2|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|112|2|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.792724609375	2	531.274367	1060.53418	1.8192	0.00096648	4.0023	0.0021263	5.8215	0.0030928	531.2769735165492	23.963	1.1332	23.782	23.371	24.504	-0.18089					30	25	2	0	0	0	0.024511	1	1063	1063		25.574	0	1	191440	+		87704	37688	61007	61108	97426	97426					0.0063347378879825555
VSFHNTFPL	9	Unmodified	_VSFHNTFPL_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|112|2|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|112|2|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.274367	1060.53418	-0.11115	-5.9052E-05	6.2836	0.0033383	6.1725	0.0032793	531.2782858084956	24.103	1.0378	23.887	23.425	24.463	-0.2151	-0.022618	-0.00069252	NaN	32.812	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160130	+		87705	37688	61007	61108							0.0063347378879825555
VSFHNTFPL	9	Unmodified	_VSFHNTFPL_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|112|2|anti-sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|112|2|anti-sense	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.274367	1060.53418	-0.6594	-0.00035032	7.3438	0.0039015	6.6844	0.0035512	531.2785812136349	23.865	0.64859	23.685	23.436	24.084	-0.17989	-0.22541	0.0004339	NaN	32.812	22	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158120	+		87706	37688	61007	61108							0.0063347378879825555
VSFIQNLVF	9	Unmodified	_VSFIQNLVF_					0	0	0		nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7717895507812	2	533.800217	1065.58588	-0.5885	-0.00031414	-3.3955	-0.0018125	-3.9839	-0.0021266	533.7982855356312	55.382	0.86683	55.151	54.927	55.794	-0.23087					60	24	4	0	0	0	0.024405	1	5898	5898		27.882	3.6795	1	4998400			87707	2438	61008	61109	97427	97427					0.055712174827021954
VSFKITLLL	9	Unmodified	_VSFKITLLL_					0	0	0		nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.3052978515625	2	517.336436	1032.65832	0.71414	0.00036945	-3.9183	-0.0020271	-3.2042	-0.0016576	517.3334980601481	60.018	0.14652	59.821	59.728	59.874	-0.19742					5	3	2	0	0	0	0.024541	1	6653	6653		19.997	4.3606	1	272410			87708	7598	61009	61110	97428	97428					0.1432955155628406
VSFPHAAQW	9	Unmodified	_VSFPHAAQW_					0	0	0		ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF;nc|ENSG00000129226|P34810-2|CD68;nc|ENSG00000129226|P34810-3|CD68	ENSG00000129226|ENST00000250092|CD68	ENSG00000129226|ENST00000250092|CD68	MSMS	OPSCC_40_ClassI_Rep-1	4	521.758544921875	2	521.758884	1041.50321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.934	1	58.746	58.246	59.246	-0.18795								0	0	0	0.0017141	1	6494	6494		186.09	97.446	1				87709	4337	61010	61111	97429	97429					-0.01587679525459862
VSFPHAAQW	9	Unmodified	_VSFPHAAQW_					0	0	0		ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF;nc|ENSG00000129226|P34810-2|CD68;nc|ENSG00000129226|P34810-3|CD68	ENSG00000129226|ENST00000250092|CD68	ENSG00000129226|ENST00000250092|CD68	MSMS	OPSCC_40_ClassI_Rep-1	4	521.7589721679688	2	521.758884	1041.50321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.015	1	58.827	58.327	59.327	-0.18795								0	0	0	0.0046436	1	6506	6506		176.41	78.938	1				87710	4337	61010	61111	97430	97430					-0.01587679525459862
VSFPHAAQW	9	Unmodified	_VSFPHAAQW_					0	0	0		ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF;nc|ENSG00000129226|P34810-2|CD68;nc|ENSG00000129226|P34810-3|CD68	ENSG00000129226|ENST00000250092|CD68	ENSG00000129226|ENST00000250092|CD68	MSMS	OPSCC_40_ClassI_Rep-1	4	521.758544921875	2	521.758884	1041.50321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.079	1	58.891	58.391	59.391	-0.18795								0	0	0	0.010183	1	6516	6516		166.78	76.006	1				87711	4337	61010	61111	97431	97431					-0.01587679525459862
VSFPHAAQW	9	Unmodified	_VSFPHAAQW_					0	0	0		ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF;nc|ENSG00000129226|P34810-2|CD68;nc|ENSG00000129226|P34810-3|CD68	ENSG00000129226|ENST00000250092|CD68	ENSG00000129226|ENST00000250092|CD68	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.7586059570312	2	521.758884	1041.50321	0.43965	0.00022939	-0.30694	-0.00016015	0.13271	6.9242E-05	521.7584805977367	58.803	1.2862	58.621	58.187	59.473	-0.18134					103	31	4	0	0	0	0.014988	3	6500	6474;6487;6500		207.6	102.86	1	3977300			87712	4337	61010	61111	97432;97433;97434	97434					-0.01587679525459862
VSFPHAAQW	9	Unmodified	_VSFPHAAQW_					0	0	0		ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF;nc|ENSG00000129226|P34810-2|CD68;nc|ENSG00000129226|P34810-3|CD68	ENSG00000129226|ENST00000250092|CD68	ENSG00000129226|ENST00000250092|CD68	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7584838867188	2	521.758884	1041.50321	0.7025	0.00036654	-0.49583	-0.0002587	0.20668	0.00010784	521.7584069165132	59.004	1.2108	58.762	58.173	59.384	-0.24165					100	29	5	0	0	0	0.013995	2	6488	6488;6499		181.81	96.645	1	4184200			87713	4337	61010	61111	97435;97436	97435					-0.01587679525459862
VSFPIVAWL	9	Unmodified	_VSFPIVAWL_					0	0	0		ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	516.2994384765625	2	516.299853	1030.58515	-0.28456	-0.00014692	0.15231	7.8639E-05	-0.13225	-6.8281E-05	516.2999584865539	104.14	1.4157	104.14	103.74	105.15	0					115	39	4	0	0	0	0.20304	1	13388	13388		88.643	10.699	1	7636000			87714	15827	61011	61112	97437	97437					0.07108422833653094
VSFPIVAWL	9	Unmodified	_VSFPIVAWL_					0	0	0		ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2996826171875	2	516.299853	1030.58515	-0.083051	-4.2879E-05	-0.2157	-0.00011136	-0.29875	-0.00015424	516.2997814554781	104.12	2.2788	104.13	102.85	105.13	0.0031357					125	61	3	0	0	0	0.20304	2	13333	13321;13333		88.643	2.0723	1	6691800			87715	15827	61011	61112	97438;97439	97439					0.07108422833653094
VSFPIVAWL	9	Unmodified	_VSFPIVAWL_					0	0	0		ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2997436523438	2	516.299853	1030.58515	-0.36416	-0.00018802	0.019932	1.0291E-05	-0.34423	-0.00017773	516.2999017348479	104.18	1.4423	104.18	103.81	105.25	-0.0032196					106	40	3	0	0	0	0.20304	1	13286	13286		88.643	8.7036	1	7489400			87716	15827	61011	61112	97440	97440					0.07108422833653094
VSFPIVAWL	9	Unmodified	_VSFPIVAWL_					0	0	0		ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2999877929688	2	516.299853	1030.58515	0.10005	5.1658E-05	-0.27293	-0.00014091	-0.17288	-8.9256E-05	516.2997390890621	103.98	1.212	103.85	103.56	104.77	-0.12561					58	31	2	0	0	0	0.20304	1	12928	12928		88.643	2.7337	1	5785600			87717	15827	61011	61112	97441	97441					0.07108422833653094
VSFRSGGSRSF	11	Unmodified	_VSFRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.8018798828125	2	593.801811	1185.58907	-1.1868	-0.00070472	0.72835	0.0004325	-0.45844	-0.00027222	593.8023054283966	35.942	2.4854	35.737	35.428	37.913	-0.20518					202	66	5	0	0	0	0.73278	3	2831	2794;2831;2845		61.765	15.792	1	98507000		+	87718	520;569;17808	61012	61113	97442;97443;97444	97443					0.0036986058942147793
VSFRSGGSRSF	11	Unmodified	_VSFRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.8020629882812	2	593.801811	1185.58907	-0.75176	-0.0004464	0.25569	0.00015183	-0.49606	-0.00029456	593.8020284979149	35.892	2.8005	35.675	35.391	38.191	-0.21661					234	75	6	0	0	0	0.86757	4	2757	2757;2793;2805;2857		53.597	5.9395	1	98136000		+	87719	520;569;17808	61012	61113	97445;97446;97447;97448	97445					0.0036986058942147793
VSFRSGGSRSF	11	Unmodified	_VSFRSGGSRSF_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT5|p.K276Efs*19|1|0.37|ENSG00000186081|chr12:52518109-52518110|-/A|frameshift_variant;KRT5|p.S71Lfs*9|1|0.6|ENSG00000186081|chr12:52520087-52520088|-/C|frameshift_variant;KRT5|p.P136Rfs*4|1|0.11|ENSG00000186081|chr12:52519858-52519891|GGTTGACAGTGACCTCTTGGATACCTCCAGGAGG/-|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2;KRT5|p.V35Pfs*117|1|0.4|ENSG00000186081|chr12:52520194-52520195|-/GG|frameshift_variant	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.8013305664062	2	593.801811	1185.58907	-0.22649	-0.00013449	-0.19073	-0.00011326	-0.41722	-0.00024775	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.94699	4	2789	2716;2728;2752;2789		48.602	6.3986	1	111520000		+	87720	520;569;17808	61012	61113	97449;97450;97451;97452	97452					0.0036986058942147793
VSFRVWLP	8	Unmodified	_VSFRVWLP_					0	0	0		ENST00000440097.5_1_3:45635946-45636024:+|nuORF	ENST00000440097.5_1_3:45635946-45636024:+|nuORF	ENST00000440097.5_1_3:45635946-45636024:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	503.253173828125	2	502.28982	1002.56509	-0.19867	-9.9791E-05	4.3337	0.0021768	4.135	0.002077	502.29170020746477	44.66	0.52143	44.697	44.509	45.031	0.0369					41	14	4	0	0	0	0.027866	1	4219	4219		33.516	0	1	2698400			87721	14344	61013	61114	97453	97453					0.06390671893700528
VSFSLKND	8	Unmodified	_VSFSLKND_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	454.78118896484375	2	455.23745	908.460347	-0.72479	-0.00032995	3.4531	0.001572	2.7283	0.001242	455.2385293456837	44.686	0.46913	44.587	44.28	44.749	-0.099449					16	11	3	0	0	0	0.027866	1	4201	4201		29.15	0	1	68166			87722	3501	61014	61115	97454	97454					0.002455056264693667
VSFSSRKT	8	Unmodified	_VSFSSRKT_					0	0	0			REV__ENST00000373233.7_1_20:40032757-40032964:-|nuORF	REV__ENST00000373233.7_1_20:40032757-40032964:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	456.7487487792969	2	456.250892	910.48723	-0.39615	-0.00018074	1.5397	0.0007025	1.1436	0.00052176	456.2513456437863	29.344	1.7291	29.347	28.971	30.7	0.0031357					65	42	2	0	0	0	0.027866	1	1899	1899		17.365	5.1581	1	490060	+		87723	31247	61015	61116	97455	97455					0.028406142376638854
VSFTLASPAI	10	Unmodified	_VSFTLASPAI_					0	0	0			REV__ENST00000568207.5_1_15:75315958-75337059:+|nuORF	REV__ENST00000568207.5_1_15:75315958-75337059:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	503.2540283203125	2	503.2844	1004.55425	-0.78906	-0.00039712	-3.6156	-0.0018197	-4.4047	-0.0022168	503.28287900561105	44.708	0.10271	44.708	44.622	44.725	0					4	2	2	0	0	0	0.03519	1	4275	4275		31.53	8.4873	1	50508	+		87724	35337	61016	61117	97456	97456					0.0521522472874949
VSFTTGGGTL	10	Unmodified	_VSFTTGGGTL_					0	0	0			REV__ENSG00000100425|ENST00000404760|BRD1	REV__ENSG00000100425|ENST00000404760|BRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	469.76824951171875	2	470.242732	938.470912	-0.089495	-4.2085E-05	0.27023	0.00012707	0.18073	8.4988E-05	470.24276293866996	48.522	0.89896	48.522	48.14	49.039	0					34	25	2	0	0	0	0.03519	1	4901	4901		51.335	0	1	124800	+		87725	21115	61017	61118	97457	97457					-0.000785117190616802
VSFVDLEQF	9	Unmodified	_VSFVDLEQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.2576904296875	2	542.27149	1082.52843	-1.4535	-0.00078818	4.2441	0.0023014	2.7906	0.0015133	542.2736795569516	46.04	2.005	45.838	45.259	47.264	-0.20226					72	55	2	0	0	0	0.024535	1	4632	4632		18.324	1.8513	1	655500			87726	1574	61018	61119	97458	97458					-0.009536695135238915
VSFVDLEQF	9	Unmodified	_VSFVDLEQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.27149	1082.52843	-0.33145	-0.00017974	3.4949	0.0018952	3.1635	0.0017155	542.2730999038646	46.068	1.9263	45.972	45.157	47.083	-0.096653	0.085654	-0.00014202	NaN	12.207	107	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698570			87727	1574	61018	61119							-0.009536695135238915
VSFVDLEQF	9	Unmodified	_VSFVDLEQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	542.27149	1082.52843	-0.47558	-0.00025789	3.1106	0.0016868	2.635	0.0014289	542.2730228677428	46.11	1.1064	45.849	45.317	46.423	-0.26118	-0.037444	-0.00055883	NaN	12.207	49	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494260			87728	1574	61018	61119							-0.009536695135238915
VSFYNQNKW	9	Unmodified	_VSFYNQNKW_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.R338Kfs*5|1|0.2|ENSG00000171320|chr8:27784051-27784052|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.2879638671875	2	593.288005	1184.56146	-1.1198	-0.00066437	0.40712	0.00024154	-0.71269	-0.00042283	593.2882166381474	54.308	1.2686	54.172	53.897	55.166	-0.13617					99	35	4	0	0	0	0.013065	5	5770	5749;5760;5770;5783;5797		190.52	92.354	1	11453000			87729	8140	61019	61120	97459;97460;97461;97462;97463	97461					-0.023440426708248197
VSFYNQNKW	9	Unmodified	_VSFYNQNKW_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.R338Kfs*5|1|0.2|ENSG00000171320|chr8:27784051-27784052|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.2880249023438	2	593.288005	1184.56146	-0.73238	-0.00043451	0.22069	0.00013093	-0.51169	-0.00030358	593.2881719403557	54.459	1.4576	54.214	53.687	55.144	-0.2453					105	43	4	0	0	0	0.013293	5	5772	5760;5772;5782;5794;5808		190.52	100.15	1	12409000			87730	8140	61019	61120	97464;97465;97466;97467;97468	97465					-0.023440426708248197
VSFYNQNKW	9	Unmodified	_VSFYNQNKW_					0	0	0		ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.R338Kfs*5|1|0.2|ENSG00000171320|chr8:27784051-27784052|-/A|frameshift_variant;ENSG00000171320|ENST00000305188|ESCO2	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENST00000524293.1_1_8:27633031-27634707:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.2874755859375	2	593.288005	1184.56146	-0.080776	-4.7923E-05	-0.31454	-0.00018661	-0.39532	-0.00023454	593.2878212363032	54.335	1.4359	54.137	53.619	55.055	-0.19739					101	40	4	0	0	0	0.014034	5	5789	5741;5753;5763;5776;5789		200.16	97.375	1	10299000			87731	8140	61019	61120	97469;97470;97471;97472;97473	97473					-0.023440426708248197
VSGAGGGG	8	Unmodified	_VSGAGGGG_					0	0	0		ENST00000283233.9_2_2:159313140-159313224:-|nuORF;ENST00000374754.8_1_10:35379243-35379558:-|nuORF	ENST00000283233.9_2_2:159313140-159313224:-|nuORF	ENST00000283233.9_2_2:159313140-159313224:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2975463867188	1	561.262716	560.255439	-1.213	-0.00068079	1.4711	0.00082565	0.25809	0.00014486	561.2596661444205	38.636	0.15786	38.457	38.342	38.5	-0.17929					5	3	2	0	0	0	0.027866	1	3200	3200		14.664	0	1	26532			87732	11735	61020	61121	97474	97474					-0.042278083932387744
VSGALARVL	9	Unmodified	_VSGALARVL_					0	0	0		ENST00000468686.5_1_22:21982709-21983718:-|nuORF;ENSG00000161179|ENST00000292778|YDJC	ENST00000468686.5_1_22:21982709-21983718:-|nuORF	ENST00000468686.5_1_22:21982709-21983718:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7900085449219	2	443.279452	884.544351	-0.83328	-0.00036938	0.61724	0.00027361	-0.21604	-9.5767E-05	443.27958874433864	30.275	0.58467	30.097	29.782	30.366	-0.17817					27	13	3	0	0	0	0.024021	1	1944	1944		25.574	0	1	407830			87733	6865	61021	61122	97475	97475					0.09746081514037996
VSGALEKQKP	10	Unmodified	_VSGALEKQKP_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2982788085938	2	528.806031	1055.59751	-0.36781	-0.0001945	0.21863	0.00011561	-0.14918	-7.8885E-05	528.8061075275764	50.661	0.82931	50.511	50.289	51.118	-0.14916					30	23	2	0	0	0	0.03519	1	5327	5327		23.523	0	1	1522400	+		87734	23659	61022	61123	97476	97476					0.07193414506036788
VSGAVSKAV	9	Unmodified	_VSGAVSKAV_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.1829528808594	2	409.242535	816.470518	1.3529	0.00055368	-0.76597	-0.00031347	0.58697	0.00024021	409.2421937719265	24.916	0.43454	24.745	24.599	25.034	-0.17151					15	9	2	0	0	0	0.024412	1	1125	1125		17.365	0	1	66638			87735	1956	61023	61124	97477	97477					0.05494113351721808
VSGCLCLKIL	10	Unmodified	_VSGCLCLKIL_					0	0	0		ENST00000197268.12_1_12:13235312-13235447:+|nuORF	ENST00000197268.12_1_12:13235312-13235447:+|nuORF	ENST00000197268.12_1_12:13235312-13235447:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2842407226562	2	524.798306	1047.58206	-0.79348	-0.00041642	-3.7158	-0.00195	-4.5093	-0.0023665	525.2982919080521	55.678	1.0258	55.776	55.257	56.283	0.098011					56	27	3	0	0	0	0.03519	1	6007	6007		18.262	1.7889	1	1117600			87736	11128	61024	61125	97478	97478					0.06017088392991354
VSGCPPVLL	9	Carbamidomethyl (C)	_VSGC(Carbamidomethyl (C))PPVLL_	VSGC(1)PPVLL		VSGC(80)PPVLL		0	1	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2925109863281	2	471.259871	940.505189	0.36392	0.0001715	1.5239	0.00071813	1.8878	0.00088963	471.26113851076076	50.38	0.25484	50.229	50.065	50.32	-0.1512					10	7	2	0	0	0	0.022127	1	5251	5251		79.939	10.846	1	185000	+		87737	36998	61025	61126	97479	97479	477				0.03255613168164473
VSGCRHPP	8	Unmodified	_VSGCRHPP_					0	0	0		nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F	nc|ENSG00000133477|Q8NEG4-2|FAM83F	nc|ENSG00000133477|Q8NEG4-2|FAM83F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.2662048339844	2	426.710879	851.407206	0.19518	8.3284E-05	4.3355	0.00185	4.5306	0.0019333	426.7126301431375	42.369	0.4891	42.395	42.152	42.641	0.026012					29	13	3	0	0	0	0.027866	1	3857	3857		17.365	0	1	871010			87738	4712	61026	61127	97480	97480					-0.024441506371772448
VSGCTLLVKV	10	Unmodified	_VSGCTLLVKV_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.8183898925781	2	509.801903	1017.58925	-0.095477	-4.8674E-05	-3.5454	-0.0018075	-3.6409	-0.0018561	509.7999027454372	75.226	0.46815	75.237	74.895	75.363	0.010376					21	11	2	0	0	0	0.03519	1	9117	9117		39.253	3.6345	1	308530			87739	6526	61027	61128	97481	97481					0.08116144265079583
VSGDSDTSSW	10	Unmodified	_VSGDSDTSSW_					0	0	0			REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	REV__nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2644653320312	2	520.711993	1039.40943	-0.71669	-0.00037319	2.2751	0.0011847	1.5584	0.00081148	520.7129920437898	57.148	0.35719	56.981	56.823	57.18	-0.1672					13	9	2	0	0	0	0.03519	1	6254	6254		35.618	12.096	1	69396	+		87740	27300	61028	61129	97482	97482					-0.10869488209027622
VSGDSFLIW	9	Unmodified	_VSGDSFLIW_					0	0	0			REV__nc|ENSG00000139364|Q14DG7-3|TMEM132B	REV__nc|ENSG00000139364|Q14DG7-3|TMEM132B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2868347167969	2	512.260925	1022.5073	0.16957	8.6863E-05	2.455	0.0012576	2.6246	0.0013445	512.2620376883392	58.71	0.50448	58.801	58.635	59.14	0.091217					21	13	2	0	0	0	0.024506	1	6576	6576		16.473	0	1	405660	+		87741	23939	61029	61130	97483	97483					-0.003056348223594796
VSGDVKKGKT	10	Unmodified	_VSGDVKKGKT_					0	0	0			REV__ENST00000488986.1_1_2:70124546-70130384:+|nuORF	REV__ENST00000488986.1_1_2:70124546-70130384:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.2716979980469	2	509.798206	1017.58186	0.19818	0.00010103	3.4232	0.0017451	3.6213	0.0018462	509.7994932372311	49.909	0.5242	49.804	49.486	50.011	-0.10558					22	13	2	0	0	0	0.03519	1	5075	5075		60.118	10.677	1	134390	+		87742	22760	61030	61131	97484	97484					0.07377127989002474
VSGEDAGNKY	10	Unmodified	_VSGEDAGNKY_					0	0	0		ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.2637939453125	2	520.238178	1038.4618	-0.72536	-0.00037736	1.7796	0.00092582	1.0543	0.00054846	520.236647251596	56.22	0.39576	56.22	56.139	56.535	0					14	10	2	0	0	0	0.03519	1	6248	6248		21.96	0	1	120200			87743	17014	61031	61132	97485	97485					-0.055889050754103664
VSGERLIV	8	Unmodified	_VSGERLIV_					0	0	0		HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant;ENSG00000182601|ENST00000331351|HS3ST4	HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	HS3ST4|p.D423Rfs*33|1|0.44|ENSG00000182601|chr16:26136142-26136143|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.21929931640625	2	436.763635	871.512717	0.048014	2.0971E-05	-0.4022	-0.00017567	-0.35419	-0.0001547	436.7634115455377	44.488	0.61428	44.525	44.273	44.887	0.0369					33	17	3	0	0	0	0.027866	1	4210	4210		4.3163	0	1	454990			87744	17748	61032	61133	97486	97486					0.07182088760100669
VSGESPRLLS	10	Unmodified	_VSGESPRLLS_					0	0	0			REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	REV__nc|ENSG00000164049|Q6X9E4-3|FBXW12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2688598632812	2	522.787838	1043.56112	-0.31085	-0.00016251	-2.5537	-0.0013351	-2.8646	-0.0014976	523.2867956638737	42.102	0.69067	41.87	41.583	42.273	-0.23186					41	18	3	0	0	0	0.03519	1	3754	3754		29.17	0.020503	1	569060	+		87745	36860	61033	61134	97487	97487					0.04108537609340601
VSGEYAAR	8	Unmodified	_VSGEYAAR_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2662658691406	2	426.714142	851.413731	0.020714	8.839E-06	-3.0204	-0.0012888	-2.9997	-0.00128	426.7126868156824	42.349	0.55926	42.349	42.12	42.679	0					35	15	3	0	0	0	0.027866	1	3907	3907		21.96	3.6355	1	920300	+		87746	24004	61034	61135	97488	97488					-0.01791934204811696
VSGFIHKIY	9	Unmodified	_VSGFIHKIY_					0	0	0		nc|ENSG00000196115|Q6NVV9-2|ADAM5;nc|ENSG00000196115|Q6NVV9-5|ADAM5;nc|ENSG00000196115|Q6NVV9-4|ADAM5;nc|ENSG00000196115|Q6NVV9-6|ADAM5;nc|ENSG00000196115|Q6NVV9-7|ADAM5;nc|ENSG00000196115|Q6NVV9|ADAM5	nc|ENSG00000196115|Q6NVV9-2|ADAM5	nc|ENSG00000196115|Q6NVV9-2|ADAM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.8215942382812	2	532.300384	1062.58622	-0.59963	-0.00031918	1.7071	0.00090871	1.1075	0.00058953	532.3008110034189	69.973	0.25268	69.706	69.493	69.746	-0.26724					9	5	2	0	0	0	0.024319	1	8132	8132		47.657	14.164	1	160430			87747	18617	61035	61136	97489	97489					0.05742637202547485
VSGFPGDMDV	10	Unmodified	_VSGFPGDMDV_					0	0	0			REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.2540283203125	2	512.226225	1022.4379	-0.32042	-0.00016413	-2.4762	-0.0012684	-2.7966	-0.0014325	512.7280198248234	54.013	0.16733	54.013	53.942	54.109	0					6	4	2	0	0	0	0.03519	1	5894	5894		32.812	7.3622	1	162910	+		87748	21405	61036	61137	97490	97490					-0.07242461833448033
VSGFSDLIED	10	Unmodified	_VSGFSDLIED_					0	0	0		nc|ENSG00000128656|P15882-3|CHN1;ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-2|CHN1;ENST00000491801.1_1_2:175676203-175677076:-|nuORF	nc|ENSG00000128656|P15882-3|CHN1	nc|ENSG00000128656|P15882-3|CHN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.763671875	2	541.256037	1080.49752	-1.1162	-0.00060415	-3.6011	-0.0019491	-4.7173	-0.0025533	541.2531893108761	50.198	0.52956	50.198	49.949	50.479	0					35	15	3	0	0	0	0.03519	1	5195	5195		40.778	0	1	266270			87749	4307	61037	61138	97491	97491					-0.03950867618414122
VSGFTKSAL	9	Unmodified	_VSGFTKSAL_					0	0	0		OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.2427062988281	2	455.255643	908.496732	-0.41569	-0.00018924	0.65667	0.00029895	0.24099	0.00010971	455.25554114272745	38.496	0.49962	38.496	38.222	38.721	0					40	12	4	0	0	0	0.022657	1	3213	3213		77.318	22.553	1	861800			87750	18910	61038	61139	97492	97492					0.03882382523170236
VSGFTKSAL	9	Unmodified	_VSGFTKSAL_					0	0	0		OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	455.2427062988281	2	455.255643	908.496732	-0.4692	-0.00021361	1.15	0.00052353	0.68076	0.00030992	455.25585866182684	38.451	0.66128	38.368	37.984	38.645	-0.082516					44	17	4	0	0	0	0.018983	1	3185	3185		104.75	22.442	1	623830			87751	18910	61038	61139	97493	97493					0.03882382523170236
VSGFTKSAL	9	Unmodified	_VSGFTKSAL_					0	0	0		OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	OR2J3|p.N158K|1|0.04|ENSG00000204701|chr6:29112364-29112364|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	455.2421875	2	455.255643	908.496732	-1.2593	-0.00057329	1.6759	0.00076298	0.41667	0.00018969	455.2560351409276	38.609	0.79993	38.637	38.197	38.997	0.027279					63	21	4	0	0	0	0.021513	1	3170	3170		71.877	0.58177	1	590580			87752	18910	61038	61139	97494	97494					0.03882382523170236
VSGGGHLPGY	10	Unmodified	_VSGGGHLPGY_					0	0	0			REV__ENST00000333554.4_9:40332483-40332909:+|nuORF	REV__ENST00000333554.4_9:40332483-40332909:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.2520751953125	2	472.235242	942.45593	-0.018449	-8.7125E-06	-3.3259	-0.0015706	-3.3444	-0.0015793	472.23359923175644	24.113	0.39518	23.937	23.612	24.007	-0.17513					16	8	3	0	0	0	0.03519	1	1007	1007		21.96	13.729	1	527210	+		87753	30505	61039	61140	97495	97495					-0.017599587964241437
VSGGLTWIL	9	Unmodified	_VSGGLTWIL_					0	0	0		ENST00000367033.3_1_1:208417094-208417160:-|nuORF	ENST00000367033.3_1_1:208417094-208417160:-|nuORF	ENST00000367033.3_1_1:208417094-208417160:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.78717041015625	2	473.273835	944.533118	0.94146	0.00044557	0.54422	0.00025756	1.4857	0.00070313	473.2740153639045	87.257	0.91863	87.257	86.733	87.651	0					35	21	2	0	0	0	0.024436	1	10996	10996		47.916	12.715	1	92494			87754	12835	61040	61141	97496	97496					0.05863259419891165
VSGGRVAQQP	10	Unmodified	_VSGGRVAQQP_					0	0	0		sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	sp|P03179|MTP_EBVB9MajortegumentproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BNRF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	498.7883605957031	2	499.772522	997.530492	-0.6604	-0.00033005	0.87365	0.00043663	0.21325	0.00010657	499.7724111068341	21.28	0.53578	21.28	21.048	21.584	0					16	10	2	0	0	0	0.03519	1	673	673		52.937	27.363	1	48242			87755	37917	61041	61142	97497	97497					0.03162804014948506
VSGGSQKHK	9	Unmodified	_VSGGSQKHK_					0	0	0			REV__ENST00000470438.5_1_2:242435079-242436717:-|nuORF	REV__ENST00000470438.5_1_2:242435079-242436717:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.2533264160156	2	464.253966	926.493378	0.040288	1.8704E-05	-0.56771	-0.00026356	-0.52742	-0.00024486	464.253647614494	78.531	1.9862	78.276	77.955	79.941	-0.25471					73	46	2	0	0	0	0.6504	1	9346	9346		49.442	6.9671	1	2782100	+		87756	22226	61042	61143	97498	97498					0.027191324691898444
VSGGSQKHK	9	Unmodified	_VSGGSQKHK_					0	0	0			REV__ENST00000470438.5_1_2:242435079-242436717:-|nuORF	REV__ENST00000470438.5_1_2:242435079-242436717:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	464.253966	926.493378	-0.34624	-0.00016075	0.29197	0.00013555	-0.054278	-2.5199E-05	464.2540008910169	78.564	1.5456	78.564	78.282	79.828	0	0.18839	0.00048814	NaN	49.442	85	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717960	+		87757	22226	61042	61143							0.027191324691898444
VSGGSRSLNM	10	Unmodified	_VSGGSRSLNM_					0	0	0		PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant;ENSG00000116793|ENST00000369604|PHTF1;nc|ENSG00000116793|Q9UMS5-2|PHTF1	PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	PHTF1|p.P693Afs*3|1|0.31|ENSG00000116793|chr1:113699770-113699771|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.27264404296875	2	504.250566	1006.48658	-0.14189	-7.1547E-05	-2.5548	-0.0012882	-2.6966	-0.0013598	504.24915154163165	66.024	0.55056	65.751	65.362	65.913	-0.27282					34	14	3	0	0	0	0.03519	1	7777	7777		84.916	16.129	1	684780			87758	3579	61043	61144	97499	97499					-0.016405484736765175
VSGHIHGF	8	Unmodified	_VSGHIHGF_					0	0	0		nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	426.2348937988281	2	427.219395	852.424236	-1.1044	-0.00047184	3.212	0.0013722	2.1076	0.0009004	427.22036699303834	28.384	0.21171	28.384	28.318	28.53	0					5	4	2	0	0	0	0.027866	1	1651	1651		14.664	0.88877	1	16706			87759	18722	61044	61145	97500	97500					-0.007879067597173162
VSGHPWGGRL	10	Unmodified	_VSGHPWGGRL_					0	0	0		ENST00000593460.1_1_19:18119399-18119966:+|nuORF	ENST00000593460.1_1_19:18119399-18119966:+|nuORF	ENST00000593460.1_1_19:18119399-18119966:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7738647460938	2	533.283057	1064.55156	-1.1422	-0.00060911	4.0975	0.0021852	2.9554	0.001576	533.2829923537691	48.102	0.34189	47.826	47.738	48.08	-0.27598					13	8	2	0	0	0	0.03519	1	4743	4743		20.947	0.95016	1	201950			87760	17392	61045	61146	97501	97501					0.021868141144750552
VSGHPWGGRL	10	Unmodified	_VSGHPWGGRL_					0	0	0		ENST00000593460.1_1_19:18119399-18119966:+|nuORF	ENST00000593460.1_1_19:18119399-18119966:+|nuORF	ENST00000593460.1_1_19:18119399-18119966:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	533.283057	1064.55156	-0.7679	-0.00040951	4.3338	0.0023112	3.5659	0.0019017	533.2851228302038	47.444	0.17545	47.444	47.289	47.464	0	-0.19143	1.4566E-05	NaN	20.947	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	682120			87761	17392	61045	61146							0.021868141144750552
VSGILIWLS	9	Unmodified	_VSGILIWLS_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.3157958984375	2	494.29731	986.580068	-0.23145	-0.00011441	4.259	0.0021052	4.0275	0.0019908	494.29902968923216	73.757	0.40992	73.486	73.167	73.577	-0.27126					21	10	3	0	0	0	0.024323	1	8986	8986		44.117	0	1	379100	+		87762	24202	61046	61147	97502	97502					0.08624118971033568
VSGILIWLS	9	Unmodified	_VSGILIWLS_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.317626953125	2	494.29731	986.580068	-0.30287	-0.00014971	4.0194	0.0019868	3.7165	0.0018371	494.2993214039301	73.49	0.49082	73.5	73.107	73.598	0.0096512					22	12	2	0	0	0	0.024457	1	8904	8904		37.159	5.6293	1	450270	+		87763	24202	61046	61147	97503	97503					0.08624118971033568
VSGILRYVP	9	Unmodified	_VSGILRYVP_					0	0	0		ENST00000296328.8_1_3:196082540-196082612:-|nuORF	ENST00000296328.8_1_3:196082540-196082612:-|nuORF	ENST00000296328.8_1_3:196082540-196082612:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.75384521484375	2	502.300384	1002.58622	-0.44913	-0.0002256	-4.3045	-0.0021621	-4.7536	-0.0023877	502.29805502855646	30.938	0.40973	30.786	30.597	31.006	-0.15231					19	9	3	0	0	0	0.024436	1	1993	1993		6.3127	0	1	223600			87764	11841	61047	61148	97504	97504					0.08502637202559526
VSGILSWNK	9	Unmodified	_VSGILSWNK_					0	0	0			REV__nc|ENSG00000164051|Q96ER9-2|CCDC51	REV__nc|ENSG00000164051|Q96ER9-2|CCDC51	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.7558898925781	2	502.282192	1002.54983	-0.083998	-4.2191E-05	-4.2019	-0.0021106	-4.2859	-0.0021528	502.78236798404276	47.305	0.23089	47.209	47.008	47.239	-0.096653					7	5	2	0	0	0	0.024477	1	4612	4612		27.882	1.0861	1	76702	+		87765	25679	61048	61149	97505	97505					0.04865760305847289
VSGISLLDN	9	Unmodified	_VSGISLLDN_					0	0	0		ENSG00000114745|ENST00000319283|GORASP1;ENST00000441302.6_1_3:39139729-39142014:-|nuORF	ENSG00000114745|ENST00000319283|GORASP1	ENSG00000114745|ENST00000319283|GORASP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.26641845703125	2	459.250557	916.486562	-0.55066	-0.00025289	2.0382	0.00093606	1.4876	0.00068317	459.25116130860954	28.049	0.8128	27.804	27.593	28.406	-0.24524					22	19	2	0	0	0	0.024381	1	1682	1682		15.642	0	1	135280			87766	3381	61049	61150	97506	97506					0.02497774797961938
VSGITASSL	9	Unmodified	_VSGITASSL_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.90325927734375	2	417.732	833.449448	-0.0062934	-2.629E-06	2.1012	0.00087774	2.0949	0.00087511	417.7328480648919	31.812	0.75952	31.627	31.321	32.081	-0.18503					22	17	2	0	0	0	0.024412	1	2190	2190		3.1592	0	1	152730			87767	16039	61050	61151	97507	97507					0.026061032522079586
VSGKKEDVK	9	Unmodified	_VSGKKEDVK_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7615661621094	2	495.284931	988.55531	1.5075	0.00074662	-1.7858	-0.00088448	-0.27834	-0.00013786	495.2842153518719	64.091	0.53695	64.091	63.81	64.347	0					33	14	3	0	0	0	0.024405	1	7571	7571		35.618	0	1	413680			87768	3946	61051	61152	97508	97508					0.06057439097662609
VSGKPRAQ	8	Unmodified	_VSGKPRAQ_					0	0	0		ENST00000416953.2_1_12:133210721-133212582:-|nuORF	ENST00000416953.2_1_12:133210721-133212582:-|nuORF	ENST00000416953.2_1_12:133210721-133212582:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.8467102050781	2	421.745776	841.477	-0.1026	-4.3271E-05	1.7641	0.00074401	1.6615	0.00070074	421.74842074665924	33.34	0.23765	33.109	32.916	33.153	-0.23107					6	5	2	0	0	0	0.027866	1	2362	2362		23.042	6.5693	1	23345			87769	13909	61052	61153	97509	97509					0.04992051303088374
VSGKPRAQ	8	Unmodified	_VSGKPRAQ_					0	0	0		ENST00000416953.2_1_12:133210721-133212582:-|nuORF	ENST00000416953.2_1_12:133210721-133212582:-|nuORF	ENST00000416953.2_1_12:133210721-133212582:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	421.745776	841.477	-0.6207	-0.00026178	8.5034	0.0035863	7.8827	0.0033245	421.7496207437284	33.338	0.20328	33.338	33.251	33.454	0	0.11461	0.0053758	NaN	23.042	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44887			87770	13909	61052	61153							0.04992051303088374
VSGLCLRNF	9	Unmodified	_VSGLCLRNF_					0	0	0		ENST00000355396.7_2_9:114840835-114840883:-|nuORF	ENST00000355396.7_2_9:114840835-114840883:-|nuORF	ENST00000355396.7_2_9:114840835-114840883:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.76702880859375	2	504.768394	1007.52224	-0.19713	-9.9504E-05	-3.8476	-0.0019422	-4.0448	-0.0020417	504.76647041137096	63.593	2.0499	63.4	62.738	64.788	-0.19243					167	51	5	0	0	0	0.50848	1	7273	7273		58.782	0.97068	1	34087000			87771	12644	61053	61154	97510	97510					0.01877533773961204
VSGLFGPRR	9	Unmodified	_VSGLFGPRR_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.8034362792969	2	494.787976	987.561398	-0.13882	-6.8684E-05	4.3837	0.002169	4.2448	0.0021003	494.7900508688111	32.193	1.3622	32.193	31.428	32.79	0					56	34	2	0	0	0	0.024523	1	2191	2191		21.96	0	1	414260	+		87772	33342	61054	61155	97511	97511					0.06712002119854787
VSGLKQTL	8	Unmodified	_VSGLKQTL_					0	0	0		ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404-1|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	ENSG00000167608|ENST00000619895|TMC4	ENSG00000167608|ENST00000619895|TMC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.2585754394531	2	423.258185	844.501818	-0.76755	-0.00032487	1.0071	0.00042624	0.2395	0.00010137	423.25856366135054	26.965	1.2784	27.047	26.714	27.993	0.081291					78	33	4	0	0	0	0.91956	2	1393	1393;1406		49.442	1.5259	1	4236400			87773	7707	61055	61156	97512;97513	97512					0.07334686385820532
VSGLKYVQ	8	Unmodified	_VSGLKYVQ_					0	0	0		ENSG00000111348|ENST00000228945|ARHGDIB	ENSG00000111348|ENST00000228945|ARHGDIB	ENSG00000111348|ENST00000228945|ARHGDIB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	447.87762451171875	2	447.258185	892.501818	-0.45616	-0.00020402	1.0318	0.00046147	0.57562	0.00025745	447.25854014704356	64.648	0.87923	64.446	64.184	65.063	-0.20254					33	21	3	0	0	0	0.027866	1	7336	7336		6.7355	0	1	249970			87774	3110	61056	61157	97514	97514					0.05126686385813173
VSGLRWPP	8	Unmodified	_VSGLRWPP_					0	0	0		ENST00000520832.1_2_8:22250576-22250675:+|nuORF	ENST00000520832.1_2_8:22250576-22250675:+|nuORF	ENST00000520832.1_2_8:22250576-22250675:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.258056640625	2	456.25852	910.502486	0.10015	4.5696E-05	-0.56547	-0.000258	-0.46532	-0.0002123	456.258324860341	32.29	4.0779	32.353	30.991	35.069	0.062885					273	104	3	0	0	0	1.0133	1	2095	2095		35.201	1.7077	1	17962000			87775	15993	61057	61158	97515	97515					0.04365525825517125
VSGLRWPP	8	Unmodified	_VSGLRWPP_					0	0	0		ENST00000520832.1_2_8:22250576-22250675:+|nuORF	ENST00000520832.1_2_8:22250576-22250675:+|nuORF	ENST00000520832.1_2_8:22250576-22250675:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	455.8881530761719	2	456.25852	910.502486	-1.0237	-0.00046706	3.0829	0.0014066	2.0593	0.00093956	456.260098101569	37.677	0.2288	37.457	37.35	37.579	-0.2195					8	5	2	0	0	0	0.027866	1	3034	3034		19.36	0	1	117740			87776	15993	61057	61158	97516	97516					0.04365525825517125
VSGLSSNTKA	10	Unmodified	_VSGLSSNTKA_					0	0	0		ENSG00000137776|ENST00000380516|SLTM;SLTM|p.E514Kfs*8|1|0.11|ENSG00000137776|chr15:58893930-58893930|T/-|frameshift_variant	ENSG00000137776|ENST00000380516|SLTM	ENSG00000137776|ENST00000380516|SLTM	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.2853088378906	2	482.258914	962.503274	0.48396	0.0002334	-0.80296	-0.00038724	-0.319	-0.00015384	482.2584640626099	54.361	0.43569	54.459	54.225	54.66	0.098015					27	12	3	0	0	0	0.03519	1	5849	5849		52.937	15.778	1	287860			87777	5153	61058	61159	97517	97517					0.020522756839113754
VSGPAWHLP	9	Unmodified	_VSGPAWHLP_					0	0	0			REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF	REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.25421142578125	2	482.255977	962.497401	0.07931	3.8248E-05	-3.081	-0.0014858	-3.0017	-0.0014476	482.2544303545986	30.798	1.2356	30.646	30.298	31.534	-0.15231					58	30	2	0	0	0	0.78069	1	1953	1953		40.573	6.4001	1	2628500	+		87778	32897	61059	61160	97518	97518					0.014652219629056162
VSGPEWRR	8	Unmodified	_VSGPEWRR_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.8034362792969	2	493.761958	985.509363	-0.15788	-7.7954E-05	-1.676	-0.00082755	-1.8339	-0.0009055	493.7612423819861	32.223	0.39046	32.223	31.949	32.34	0					16	9	2	0	0	0	0.027866	1	2191	2191		25.45	0	1	275140	+		87779	25624	61060	61161	97519	97519					0.016028387060941895
VSGPKLNI	8	Unmodified	_VSGPKLNI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	415.2296142578125	2	414.252903	826.491253	0.45112	0.00018688	-0.49469	-0.00020493	-0.043571	-1.8049E-05	414.25258785013403	27.197	0.41038	27.197	26.951	27.361	0					15	10	2	0	0	0	0.027866	1	1455	1455		17.365	0	1	132790			87780	4084	61061	61162	97520	97520					0.07106703731358266
VSGPKVPAF	9	Unmodified	_VSGPKVPAF_					0	0	0		ENST00000401533.6_1_2:26412041-26412347:+|nuORF	ENST00000401533.6_1_2:26412041-26412347:+|nuORF	ENST00000401533.6_1_2:26412041-26412347:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.779296875	2	451.260728	900.506903	-0.16465	-7.43E-05	0.56724	0.00025597	0.40259	0.00018167	451.2608233779496	47.876	0.71751	47.723	47.441	48.159	-0.15301					68	21	5	0	0	0	0.024405	1	4823	4823		27.882	14.107	1	982850			87781	13671	61062	61163	97521	97521					0.05266990248424008
VSGPKVPAF	9	Unmodified	_VSGPKVPAF_					0	0	0		ENST00000401533.6_1_2:26412041-26412347:+|nuORF	ENST00000401533.6_1_2:26412041-26412347:+|nuORF	ENST00000401533.6_1_2:26412041-26412347:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	451.260728	900.506903	-0.67483	-0.00030452	2.2232	0.0010033	1.5484	0.00069873	451.26211939740404	47.662	1.0437	47.721	47.214	48.258	0.059097	-0.011812	0.0015399	NaN	14.865	67	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876110			87782	13671	61062	61163							0.05266990248424008
VSGPNSPSES	10	Unmodified	_VSGPNSPSES_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.2763671875	2	480.717079	959.419604	-1.1422	-0.00054908	1.707	0.00082057	0.56475	0.00027149	480.7177211182981	48.689	0.46371	48.409	48.147	48.611	-0.27977					22	12	2	0	0	0	0.03519	1	4817	4817		32.812	10.853	1	224940			87783	1688	61063	61164	97522	97522					-0.06172880483802601
VSGPPLSSTP	10	Unmodified	_VSGPPLSSTP_					0	0	0			REV__nc|ENSG00000135525|Q14244-5|MAP7	REV__nc|ENSG00000135525|Q14244-5|MAP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.7821044921875	2	471.250557	940.486562	-0.81129	-0.00038232	0.50522	0.00023808	-0.30607	-0.00014424	471.2478375417657	29.493	0.62426	29.493	29.149	29.773	0					30	15	3	0	0	0	0.03519	1	1807	1807		14.137	0	1	103700	+		87784	23554	61064	61165	97523	97523					0.013937747979525739
VSGPPRRAF	9	Unmodified	_VSGPPRRAF_					0	0	0		ENST00000227756.4_1_11:11292512-11292662:-|nuORF	ENST00000227756.4_1_11:11292512-11292662:-|nuORF	ENST00000227756.4_1_11:11292512-11292662:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7776794433594	2	493.780151	985.545748	-0.39634	-0.0001957	-3.6789	-0.0018166	-4.0752	-0.0020123	493.7782350575221	21.321	0.39322	21.231	21.01	21.403	-0.090092					13	7	2	0	0	0	0.024412	1	645	645		24.203	6.8378	1	497410			87785	11214	61065	61166	97524	97524					0.05239715602795059
VSGQNHTLAT	10	Unmodified	_VSGQNHTLAT_					0	0	0			REV__ENSG00000107140|ENST00000336395|TESK1	REV__ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.323486328125	2	514.261988	1026.50942	0.55372	0.00028475	-2.3939	-0.0012311	-1.8402	-0.00094635	514.7605927232134	96.76	0.48476	96.769	96.53	97.015	0.0086975					27	10	3	0	0	0	0.03519	1	12328	12328		29.17	1.2878	1	144430	+		87786	21654	61066	61167	97525	97525					-0.0027720608457002527
VSGQPAKTL	9	Unmodified	_VSGQPAKTL_					0	0	0			REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	REV__nc|ENSG00000135299|Q9Y2G4-1|ANKRD6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	451.27801513671875	2	450.761092	899.507631	-0.21413	-9.6521E-05	0.257	0.00011584	0.042868	1.9323E-05	450.76101431341067	67.015	0.52048	66.733	66.555	67.075	-0.28148					20	12	2	0	0	0	0.024405	1	7983	7983		20.947	0	1	297540	+		87787	36686	61067	61168	97526	97526					0.053857848974644185
VSGRGLGEW	9	Unmodified	_VSGRGLGEW_					0	0	0			REV__ENST00000361828.6_1_3:193310987-193332528:+|nuORF	REV__ENST00000361828.6_1_3:193310987-193332528:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7895202636719	2	480.748516	959.482479	-0.43928	-0.00021118	0.53819	0.00025873	0.098905	4.7549E-05	480.7485206859267	33.814	0.46048	33.614	33.442	33.902	-0.20019					26	11	3	0	0	0	0.024506	1	2447	2447		10.866	0	1	748340	+		87788	30953	61068	61169	97527	97527					0.0011173009489766628
VSGRHQFR	8	Unmodified	_VSGRHQFR_					0	0	0		nc|ENSG00000166340|O14773-2|TPP1;ENSG00000166340|ENST00000299427|TPP1	nc|ENSG00000166340|O14773-2|TPP1	nc|ENSG00000166340|O14773-2|TPP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.8034362792969	2	493.767575	985.520596	-0.12435	-6.1401E-05	1.5653	0.00077292	1.441	0.00071152	493.7694942833415	31.911	0.44007	31.911	31.669	32.109	0					14	10	2	0	0	0	0.027866	1	2191	2191		19.36	7.1531	1	83799			87789	7542	61069	61170	97528	97528					0.027256608002289795
VSGRITLW	8	Unmodified	_VSGRITLW_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.W1033*|1|0.15|ENSG00000166415|chr15:53597128-53597128|C/-|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.2723388671875	2	466.271627	930.528701	0.88572	0.00041298	-1.0085	-0.00047024	-0.1228	-5.7259E-05	466.2709860791975	36.195	0.74179	35.997	35.674	36.416	-0.19829					48	19	4	0	0	0	0.78609	1	2808	2808		60.294	12.637	1	2614800			87790	7554	61070	61171	97529	97529					0.060657949969822766
VSGRKHIVV	9	Unmodified	_VSGRKHIVV_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.80377197265625	2	497.811451	993.608348	-0.29621	-0.00014746	0.26845	0.00013364	-0.027756	-1.3817E-05	497.81134769927365	52.696	0.36338	52.506	52.308	52.672	-0.18982					11	8	2	0	0	0	0.024506	1	5499	5499		16.473	7.6508	1	79568			87791	6514	61071	61172	97530	97530					0.11128861670999868
VSGRNSNR	8	Unmodified	_VSGRNSNR_					0	0	0			REV__nc|ENSG00000138593|Q93073-2|SECISBP2L	REV__nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	444.244873046875	2	445.233565	888.452576	0.45424	0.00020224	0.40292	0.00017939	0.85715	0.00038163	445.2337089781651	103.02	0.65402	102.85	102.55	103.2	-0.17034					22	15	2	0	0	0	0.027866	1	12822	12822		44.117	0	1	3832400	+		87792	23864	61072	61173	97531	97531					0.00388791149566714
VSGRQPPRP	9	Unmodified	_VSGRQPPRP_					0	0	0		SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|37|3|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|37|3|sense	SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|37|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2554626464844	2	497.283057	992.551562	0.057398	2.8543E-05	2.9209	0.0014525	2.9783	0.001481	497.28436044094417	78.906	0.82364	78.925	78.651	79.475	0.018677					42	19	3	0	0	0	0.024541	1	9776	9776		30.504	0	1	806820			87793	38025	61073	61174	97532	97532					0.05498814114469042
VSGSCSYFVL	10	Unmodified	_VSGSCSYFVL_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	530.3229370117188	2	531.252243	1060.48993	-0.12136	-6.4471E-05	3.6184	0.0019223	3.497	0.0018578	531.2540292294161	36.723	0.67244	36.522	36.247	36.919	-0.20108					28	16	2	0	0	0	0.03519	1	2886	2886		40.778	16.259	1	839520			87794	18350	61074	61175	97533	97533					-0.03789298419678744
VSGSPIMNL	9	Unmodified	_VSGSPIMNL_					0	0	0		ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	459.2684326171875	2	459.241678	916.468803	-0.84106	-0.00038625	-2.7081	-0.0012437	-3.5492	-0.0016299	459.24313812319014	48.222	0.41282	47.946	47.738	48.151	-0.27598					13	10	2	0	0	0	0.024263	1	4781	4781		26.693	0	1	59508			87795	7049	61075	61176	97534	97534					0.0072273627146159924
VSGSPTKSKVT	11	Unmodified	_VSGSPTKSKVT_					0	0	0		ENSG00000164654|ENST00000340080|MIOS;ENST00000493227.1_1_7:7622738-7646720:+|nuORF	ENSG00000164654|ENST00000340080|MIOS	ENSG00000164654|ENST00000340080|MIOS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	545.3155517578125	2	545.808771	1089.60299	-0.74928	-0.00040896	-0.25647	-0.00013998	-1.0057	-0.00054895	545.8080357764757	101.76	0.26582	101.76	101.6	101.86	0					8	5	2	0	0	0	0.024736	1	13011	13011		11.636	0	1	32392			87796	7303	61076	61177	97535	97535					0.06177093297856118
VSGSVVLVVI	10	Unmodified	_VSGSVVLVVI_					0	0	0		nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4;EPHA4|p.F718Lfs*17|1|0.1|ENSG00000116106|chr2:221436591-221436591|A/-|frameshift_variant;EPHA4|p.M674Ifs*5|1|0.12|ENSG00000116106|chr2:221442881-221442882|-/A|frameshift_variant	nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.30865478515625	2	486.310418	970.606283	0.65888	0.00032042	-3.7727	-0.0018347	-3.1138	-0.0015143	486.30853464130655	20.705	0.78728	20.509	20.286	21.073	-0.19577					44	15	4	0	0	0	0.79525	1	600	600		60.972	7.6205	1	1973800			87797	3518	61077	61178	97536	97536					0.11980388142535503
VSGTQVLLTL	10	Unmodified	_VSGTQVLLTL_					0	0	0		nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7892456054688	2	515.810782	1029.60701	-1.3226	-0.0006822	0.93013	0.00047977	-0.39244	-0.00020243	515.8111008949516	51.893	0.60186	51.985	51.72	52.321	0.091938					37	15	3	0	0	0	0.03519	1	5509	5509		29.17	0	1	925700			87798	2156	61078	61179	97537	97537					0.09339182791586609
VSGTRPAW	8	Unmodified	_VSGTRPAW_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-2|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-2|NAALADL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	437.2191162109375	2	437.232502	872.450451	0.060701	2.654E-05	-4.4064	-0.0019266	-4.3457	-0.0019001	437.23048825468794	44.628	0.30688	44.665	44.476	44.783	0.0369					11	8	2	0	0	0	0.027866	1	4199	4199		23.042	4.7181	1	80073	+		87799	26223	61079	61180	97538	97538					0.009123624117592044
VSGVITLGKGA	11	Unmodified	_VSGVITLGKGA_					0	0	0			REV__nc|ENSG00000124067|Q9UP95-3|SLC12A4;REV__ENSG00000124140|ENST00000243964|SLC12A5;REV__SLC12A6|p.Y965Lfs*6|1|0.36|ENSG00000140199|chr15:34237459-34237460|-/A|frameshift_variant	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.2843933105469	2	501.303124	1000.5917	0.86508	0.00043367	2.8127	0.00141	3.6778	0.0018437	501.30441294174113	96.926	1.1259	96.789	96.479	97.605	-0.13671					35	24	2	0	0	0	0.024727	1	12079	12079		12.812	0	1	206150	+		87800	22735;22727;23992	61080	61181	97539	97539					0.09142315994370165
VSGVIVKII	9	Unmodified	_VSGVIVKII_					0	0	0		ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;nc|ENSG00000174720|Q4G0J3-2|LARP7	ENSG00000174720|ENST00000344442|LARP7	ENSG00000174720|ENST00000344442|LARP7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	464.2791442871094	2	464.315503	926.616454	0.5895	0.00027371	-2.2873	-0.001062	-1.6978	-0.00078832	464.3141362518609	51.737	0.3289	51.553	51.449	51.778	-0.18404					11	8	2	0	0	0	0.024381	1	5325	5325		37.159	0	1	85415			87801	8491	61081	61182	97540	97540					0.15020995867757847
VSGVKLVI	8	Unmodified	_VSGVKLVI_					0	0	0		ENST00000581715.1_1_18:52051821-52051902:+|nuORF	ENST00000581715.1_1_18:52051821-52051902:+|nuORF	ENST00000581715.1_1_18:52051821-52051902:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	407.24530029296875	2	407.773471	813.53239	0.03703	1.51E-05	-2.7667	-0.0011282	-2.7297	-0.0011131	407.77330708821927	35.262	0.58878	35.05	34.806	35.395	-0.21246					21	14	2	0	0	0	0.027866	1	2707	2707		12.959	0	1	86907			87802	17170	61082	61183	97541	97541					0.11816464770845414
VSGVKLVI	8	Unmodified	_VSGVKLVI_					0	0	0		ENST00000581715.1_1_18:52051821-52051902:+|nuORF	ENST00000581715.1_1_18:52051821-52051902:+|nuORF	ENST00000581715.1_1_18:52051821-52051902:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	407.773471	813.53239	0.24148	9.847E-05	-0.05174	-2.1098E-05	0.18974	7.7371E-05	407.7732775815715	35.175	0.38271	34.959	34.793	35.176	-0.21555	-0.020572	-2.2026E-05	NaN	7.6903	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104810			87803	17170	61082	61183							0.11816464770845414
VSGVKLVI	8	Unmodified	_VSGVKLVI_					0	0	0		ENST00000581715.1_1_18:52051821-52051902:+|nuORF	ENST00000581715.1_1_18:52051821-52051902:+|nuORF	ENST00000581715.1_1_18:52051821-52051902:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	407.773471	813.53239	-0.53886	-0.00021973	0.89672	0.00036566	0.35785	0.00014592	407.77348193651574	35.117	0.38022	34.93	34.76	35.14	-0.18675	-0.049487	0.00075149	NaN	7.6903	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116470			87804	17170	61082	61183							0.11816464770845414
VSGWGQLSP	9	Unmodified	_VSGWGQLSP_					0	0	0			REV__ENST00000534336.1_1_11:65265961-65266102:+|nuORF	REV__ENST00000534336.1_1_11:65265961-65266102:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.794921875	2	465.737617	929.460681	0.019299	8.9883E-06	3.5922	0.001673	3.6115	0.001682	465.73918778796235	34.24	1.7409	34.016	32.718	34.459	-0.22412					57	43	2	0	0	0	0.023635	1	2490	2490		39.253	0	1	134940	+		87805	34633	61083	61184	97542	97542					-0.006870746536719707
VSGYFLVV	8	Unmodified	_VSGYFLVV_					0	0	0			REV__ENSG00000136939|ENST00000259466|OR1L4	REV__ENSG00000136939|ENST00000259466|OR1L4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	442.7349548339844	2	442.249829	882.485105	0.082375	3.643E-05	4.1815	0.0018493	4.2639	0.0018857	442.2533617192128	22.853	0.74244	22.664	22.466	23.208	-0.18894					18	15	2	0	0	0	0.027866	1	919	919		12.207	0	1	15681	+		87806	23712	61084	61185	97543	97543					0.03916185499861058
VSHKGVHPCRL	11	Unmodified	_VSHKGVHPCRL_					0	0	0			REV__ENST00000467101.5_1_20:60776202-60776382:+|nuORF	REV__ENST00000467101.5_1_20:60776202-60776382:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.560791015625	3	411.560875	1231.66079	0.81866	0.00033693	-0.62132	-0.00025571	0.19734	8.1218E-05	411.5605834510103	20.62	1.5178	20.424	19.993	21.511	-0.19577					68	30	4	0	0	0	1.044	1	547	547		26.75	1.6237	1	239520	+		87807	33063	61085	61186	97544	97544					0.05423076742295052
VSHNSPLLHSQ	11	Unmodified	_VSHNSPLLHSQ_					0	0	0			REV__nc|ENSG00000135100|P20823-3|HNF1A	REV__nc|ENSG00000135100|P20823-3|HNF1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	406.87933349609375	3	406.879038	1217.61528	3.4662	0.0014103	-3.1049	-0.0012633	0.36138	0.00014704	406.8777788220711	19.814	1.6126	19.88	19.488	21.101	0.066195					89	32	5	0	0	0	1.0259	1	443	443		31.068	1.5174	1	1047400	+		87808	23513	61086	61187	97545	97545					0.015181297608933164
VSHPFLTL	8	Unmodified	_VSHPFLTL_					0	0	0		nc|ENSG00000215296|A8MYB1|TMCO5B	nc|ENSG00000215296|A8MYB1|TMCO5B	nc|ENSG00000215296|A8MYB1|TMCO5B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2629089355469	2	457.260728	912.506903	-0.091003	-4.1612E-05	0.67525	0.00030877	0.58425	0.00026715	457.26111764854954	63.823	0.30544	63.631	63.493	63.798	-0.19243					11	7	2	0	0	0	0.027866	1	7219	7219		31.955	0	1	93091			87809	18721	61087	61188	97546	97546					0.04714990248419326
VSHPNEVSW	9	Unmodified	_VSHPNEVSW_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.7501220703125	2	527.751256	1053.48796	-0.78686	-0.00041526	-0.90105	-0.00047553	-1.6879	-0.00089079	527.7508774325148	43.847	1.013	43.743	43.19	44.203	-0.10468					88	27	6	0	0	0	0.014454	4	4054	4032;4042;4054;4067		215.39	105.27	1	10379000			87810	5690	61088	61189	97547;97548;97549;97550	97549					-0.0366459111326094
VSHPNEVSW	9	Unmodified	_VSHPNEVSW_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.7503051757812	2	527.751256	1053.48796	-1.254	-0.0006618	-0.12752	-6.73E-05	-1.3815	-0.0007291	527.7511516657635	44.011	0.98977	43.767	43.448	44.438	-0.2444					69	26	5	0	0	0	0.013094	5	4092	4044;4053;4065;4078;4092		219.56	104.07	1	11490000			87811	5690	61088	61189	97551;97552;97553;97554;97555	97555					-0.0366459111326094
VSHPNEVSW	9	Unmodified	_VSHPNEVSW_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.7515258789062	2	527.751256	1053.48796	-0.93793	-0.00049499	-0.50172	-0.00026479	-1.4397	-0.00075978	527.7509864033055	44.025	1.4891	43.805	43.49	44.979	-0.21938					88	39	6	0	0	0	0.014034	4	4047	4047;4059;4071;4084		166.68	61.932	1	11995000			87812	5690	61088	61189	97556;97557;97558;97559	97556					-0.0366459111326094
VSHRLRLY	8	Unmodified	_VSHRLRLY_					0	0	0		ENSG00000163254|ENST00000282141|CRYGC	ENSG00000163254|ENST00000282141|CRYGC	ENSG00000163254|ENST00000282141|CRYGC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.797119140625	2	522.309075	1042.6036	1.6307	0.00085171	3.7645	0.0019663	5.3952	0.002818	522.3129789821744	36.429	0.51651	36.231	35.979	36.496	-0.19829					17	12	2	0	0	0	0.027866	1	2803	2803		38.806	1.647	1	219260			87813	7054	61089	61190	97560	97560					0.08399977528233649
VSHTSQVQ	8	Unmodified	_VSHTSQVQ_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	443.29205322265625	2	443.224874	884.435195	1.2869	0.00057039	-0.73427	-0.00032545	0.55265	0.00024495	443.2244273947599	37.198	0.5932	37.198	36.966	37.559	0					36	15	4	0	0	0	0.027866	1	3014	3014		65.803	14.468	1	722820			87814	6178	61090	61191	97561	97561					-0.011645491760873483
VSHTSVPLL	9	Unmodified	_VSHTSVPLL_					0	0	0		ENSG00000184005|ENST00000328299|ST6GALNAC3;nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3;ENST00000495983.1_1_9:130672770-130677033:-|nuORF;ENSG00000136840|ENST00000335791|ST6GALNAC4	ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.776123046875	2	476.776742	951.538931	1.6489	0.00078615	-2.1221	-0.0010118	-0.47324	-0.00022563	476.7756841288616	106.54	0.35786	106.54	106.39	106.75	0					16	10	2	0	0	0	0.70186	1	13695	13695		45.952	5.3793	1	155960			87815	9299	61091	61192	97562	97562					0.06122357931565148
VSHTSVPLL	9	Unmodified	_VSHTSVPLL_					0	0	0		ENSG00000184005|ENST00000328299|ST6GALNAC3;nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3;ENST00000495983.1_1_9:130672770-130677033:-|nuORF;ENSG00000136840|ENST00000335791|ST6GALNAC4	ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.776742	951.538931	0.49718	0.00023704	-0.67907	-0.00032376	-0.18189	-8.6721E-05	476.77637420392085	106.5	0.30577	106.5	106.37	106.67	-0.0013123	-0.056296	0.00063631	NaN	45.952	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145940			87816	9299	61091	61192							0.06122357931565148
VSHTSVPLL	9	Unmodified	_VSHTSVPLL_					0	0	0		ENSG00000184005|ENST00000328299|ST6GALNAC3;nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3;ENST00000495983.1_1_9:130672770-130677033:-|nuORF;ENSG00000136840|ENST00000335791|ST6GALNAC4	ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.776742	951.538931	0.24686	0.0001177	-0.54718	-0.00026088	-0.30031	-0.00014318	476.7763188505903	106.63	0.33539	106.63	106.47	106.81	0.0018311	0.072078	0.00076208	NaN	45.952	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141250			87817	9299	61091	61192							0.06122357931565148
VSHWQGDCLSQ	11	Unmodified	_VSHWQGDCLSQ_					0	0	0			REV__ENSG00000053747|ENST00000313654|LAMA3	REV__ENSG00000053747|ENST00000313654|LAMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.52203369140625	3	420.520633	1258.54007	-0.073561	-3.0934E-05	3.0167	0.0012686	2.9432	0.0012377	420.52186899003595	24.639	0.81821	24.464	24.089	24.907	-0.17484					59	18	5	0	0	0	1.053	1	1115	1115		24.276	1.6963	1	855430	+		87818	20182	61092	61193	97563	97563					-0.07885795761831105
VSHYAAPDEA	10	Unmodified	_VSHYAAPDEA_					0	0	0			REV__SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|43|1|anti-sense	REV__SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|43|1|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2399291992188	2	530.240721	1058.46689	-1.6646	-0.00088263	2.0182	0.0010701	0.35357	0.00018748	530.2417220414414	110.58	0.98775	110.44	109.89	110.88	-0.13983					75	39	2	0	0	0	1.1197	1	13564	13564		20.947	1.8434	1	68316	+		87819	37605	61093	61194	97564	97564					-0.06000601212804213
VSIAVIKGLTY	11	Unmodified	_VSIAVIKGLTY_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF;ENSG00000169032|ENST00000307102|MAP2K1	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	582.3533935546875	2	582.355357	1162.69616	0.23222	0.00013523	-3.492	-0.0020336	-3.2598	-0.0018983	582.3532009393155	102.38	1.4655	102.25	101.9	103.36	-0.12931					112	34	7	0	0	0	1.0344	1	12723	12723		29.17	2.1227	1	8525700			87820	7894	61094	61195	97565	97565					0.12132017751082458
VSIEEKPK	8	Unmodified	_VSIEEKPK_					0	0	0		nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-4|NASP	nc|ENSG00000132780|P49321-4|NASP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.7642822265625	2	465.26875	928.522947	-1.4161	-0.00065889	-0.65308	-0.00030386	-2.0692	-0.00096274	465.26596749129595	38.171	0.3499	38.171	37.969	38.319	0					23	10	4	0	0	0	0.027866	1	3203	3203		33.516	0	1	837630			87821	4651	61095	61196	97566	97566					0.05582651694658125
VSIEPVFND	9	Unmodified	_VSIEPVFND_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.2768859863281	2	510.25584	1018.49713	-0.051501	-2.6279E-05	-2.644	-0.0013491	-2.6955	-0.0013754	510.2557922068603	71.45	0.93883	71.46	71.05	71.989	0.010735					41	24	3	0	0	0	0.024292	1	8519	8519		40.778	0	1	310650	+		87822	20600	61096	61197	97567	97567					-0.011382425476199387
VSIGLQHFR	9	Unmodified	_VSIGLQHFR_					0	0	0		ENSG00000158220|ENST00000389567|ESYT3;ENST00000486831.5_1_3:138153640-138188991:+|nuORF;nc|ENSG00000158220|A0FGR9-2|ESYT3	ENSG00000158220|ENST00000389567|ESYT3	ENSG00000158220|ENST00000389567|ESYT3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.2625732421875	2	528.801083	1055.58761	-0.48261	-0.0002552	1.8822	0.0009953	1.3996	0.0007401	528.803483382278	100.44	0.3138	100.44	100.22	100.53	0					9	6	2	0	0	0	0.024319	1	12825	12825		66.429	15.094	1	53926			87823	6654	61097	61198	97568	97568					0.0620427129131258
VSIIVIVLV	9	Unmodified	_VSIIVIVLV_					0	0	0			REV__ENSG00000170464|ENST00000302060|DNAJC18	REV__ENSG00000170464|ENST00000302060|DNAJC18	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8337097167969	2	477.833529	953.652505	0.19865	9.4921E-05	0.15185	7.2557E-05	0.35049	0.00016748	477.833467546802	105.85	1.2379	105.85	105.54	106.78	0.00014496					116	43	4	0	0	0	1.0051	1	13494	13494		19.36	0	1	2681800	+		87824	26474	61098	61199	97569	97569					0.17382453044592694
VSILKVKGL	9	Unmodified	_VSILKVKGL_					0	0	0			REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF	REV__ENST00000298492.5_1_10:126523771-126523837:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.732177734375	2	478.828778	955.643003	-0.56448	-0.00027029	0.37197	0.00017811	-0.1925	-9.2176E-05	478.8289139339499	39.372	0.45572	39.149	38.926	39.382	-0.22311					17	11	2	0	0	0	0.024541	1	3294	3294		17.365	0	1	133690	+		87825	30024	61099	61200	97570	97570					0.16340684759086344
VSILPSKSKS	10	Unmodified	_VSILPSKSKS_					0	0	0			REV__ENST00000496303.5_1_7:4831340-4831610:+|nuORF	REV__ENST00000496303.5_1_7:4831340-4831610:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8010864257812	2	523.316232	1044.61791	2.0562	0.0010761	-2.6236	-0.0013729	-0.5673	-0.00029688	523.31496841137	19.785	0.62866	19.851	19.389	20.018	0.066195					18	12	3	0	0	0	0.03519	1	412	412		30.318	0	1	127800	+		87826	33822	61100	61201	97571	97571					0.09738585165860059
VSIPEVPL	8	Unmodified	_VSIPEVPL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2662658691406	2	427.255111	852.49567	0.014083	6.0169E-06	0.42259	0.00018056	0.43668	0.00018657	427.255169912886	42.517	0.28693	42.517	42.355	42.642	0					10	7	2	0	0	0	0.027866	1	3907	3907		31.955	6.5047	1	233870			87827	5056	61101	61202	97572	97572					0.0635216815427384
VSIPWKVL	8	Unmodified	_VSIPWKVL_					0	0	0		ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	ENSG00000149218|ENST00000278505|ENDOD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2926025390625	2	471.294571	940.574589	-0.11834	-5.5771E-05	-4.2294	-0.0019933	-4.3477	-0.002049	471.29258327038116	50.194	1.2249	50.194	49.805	51.03	0					106	35	4	0	0	0	0.50239	1	5252	5252		85.359	5.9085	1	24213000			87828	6071	61102	61203	97573	97573					0.1019244017921892
VSIRQNEW	8	Unmodified	_VSIRQNEW_					0	0	0		ENST00000469100.5_1_1:33240923-33241058:-|nuORF	ENST00000469100.5_1_1:33240923-33241058:-|nuORF	ENST00000469100.5_1_1:33240923-33241058:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	516.2998046875	2	516.267073	1030.51959	0.10477	5.4092E-05	2.391	0.0012344	2.4958	0.0012885	516.2692602491801	103.96	0.22314	103.83	103.74	103.96	-0.12561					6	4	2	0	0	0	0.027866	1	12940	12940		53.351	7.3995	1	23760			87829	14896	61103	61204	97574	97574					0.005554016406676965
VSISGAAIYPG	11	Unmodified	_VSISGAAIYPG_					0	0	0		LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant	LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant	LAMB1|p.V571Sfs*23|1|0.28|ENSG00000091136|chr7:107963052-107963053|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2960205078125	2	517.779482	1033.54441	0.057292	2.9665E-05	-1.2368	-0.00064037	-1.1795	-0.00061071	517.7793471924209	78.986	0.55212	78.732	78.427	78.979	-0.25471					18	12	2	0	0	0	0.024793	1	9382	9382		47.657	0	1	125380			87830	17910	61104	61205	97575	97575					0.028980367233771176
VSITQFLPLPK	11	Unmodified	_VSITQFLPLPK_					0	0	0		nc|ENSG00000162849|Q2KJY2-2|KIF26B;ENSG00000162849|ENST00000407071|KIF26B	nc|ENSG00000162849|Q2KJY2-2|KIF26B	nc|ENSG00000162849|Q2KJY2-2|KIF26B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.9057312011719	3	414.920063	1241.73836	-0.1293	-5.3647E-05	1.6212	0.00067268	1.4919	0.00061903	414.92038780492794	21.19	0.24577	21.19	20.998	21.244	0					9	4	3	0	0	0	0.024734	1	617	617		24.276	14.913	1	26225			87831	6998	61105	61206	97576	97576					0.12715993159463324
VSIVLLPL	8	Unmodified	_VSIVLLPL_					0	0	0			REV__ENSG00000204882|ENST00000377741|GPR20	REV__ENSG00000204882|ENST00000377741|GPR20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.2662658691406	2	427.291497	852.568441	0.069264	2.9596E-05	-4.4842	-0.0019161	-4.415	-0.0018865	427.29060887132823	42.492	0.21247	42.492	42.322	42.534	0					9	5	2	0	0	0	0.027866	1	3907	3907		28.254	0	1	44635	+		87832	28642	61106	61207	97577	97577					0.13625921947721054
VSIVLLPL	8	Unmodified	_VSIVLLPL_					0	0	0			REV__ENSG00000204882|ENST00000377741|GPR20	REV__ENSG00000204882|ENST00000377741|GPR20	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	427.291497	852.568441	-0.049929	-2.1334E-05	-11.764	-0.0050267	-11.814	-0.005048	427.2864838669602	42.606	0.32298	42.467	42.379	42.702	-0.13929	-0.034437	-0.0031401	NaN	20.482	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114790	+		87833	28642	61106	61207							0.13625921947721054
VSIVLLPL	8	Unmodified	_VSIVLLPL_					0	0	0			REV__ENSG00000204882|ENST00000377741|GPR20	REV__ENSG00000204882|ENST00000377741|GPR20	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	427.291497	852.568441	0.33075	0.00014133	-10.924	-0.0046679	-10.594	-0.0045265	427.2874259183014	42.519	0.26053	42.545	42.493	42.754	0.026012	0.043818	-0.0024225	NaN	20.482	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136230	+		87834	28642	61106	61207							0.13625921947721054
VSKAKPTTPE	10	Unmodified	_VSKAKPTTPE_					0	0	0			REV__sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1	REV__sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.787841796875	2	529.298039	1056.58152	-0.73882	-0.00039106	-0.50571	-0.00026767	-1.2445	-0.00065873	529.2975257844018	52.092	1.3008	52.092	51.6	52.901	0					79	29	4	0	0	0	1.0909	1	5631	5631		33.922	2.2874	1	9186100	+		87835	37553	61107	61208	97578	97578					0.0554970826913177
VSKAKPTTPE	10	Unmodified	_VSKAKPTTPE_					0	0	0			REV__sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1	REV__sp|P03234|SCAF_EBVB9CapsidscaffoldingproteinOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BVRF2/BdRF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.78759765625	2	529.298039	1056.58152	-0.37305	-0.00019746	-0.63765	-0.00033751	-1.0107	-0.00053496	529.2974143487326	52.191	1.264	52.043	51.609	52.873	-0.14735					103	32	7	0	0	0	0.03519	1	5620	5620		56.434	25.865	1	10431000	+		87836	37553	61107	61208	97579	97579					0.0554970826913177
VSKEAELREK	10	Unmodified	_VSKEAELREK_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;ENST00000393321.2_3_2:109102933-109106471:+|nuORF	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.8297119140625	2	594.832777	1187.651	-1.066	-0.00063411	-3.9396	-0.0023434	-5.0056	-0.0029775	594.8303073042272	73.325	0.761	73.061	72.724	73.485	-0.26479					49	18	4	0	0	0	0.91678	1	8612	8612		52.937	0	1	1950400			87837	4961	61108	61209	97580	97580					0.06468167217894916
VSKEGTEAW	9	Unmodified	_VSKEGTEAW_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.7454528808594	2	503.745639	1005.47673	0.0045735	2.3039E-06	0.12772	6.4339E-05	0.13229	6.6642E-05	503.7456543430493	34.822	0.56678	34.606	34.307	34.874	-0.21555					36	13	3	0	0	0	0.014918	2	2588	2588;2598		162.25	60.652	1	2318100			87838	9952;677	61109	61210	97581;97582	97581					-0.025794132074452136
VSKEGTEAW	9	Unmodified	_VSKEGTEAW_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.7455139160156	2	503.745639	1005.47673	-0.37373	-0.00018826	0.22192	0.00011179	-0.15181	-7.6474E-05	503.7456675372402	34.671	1.0373	34.464	34.201	35.239	-0.20695					52	25	4	0	0	0	0.013293	2	2563	2563;2572		176.09	69.672	1	2560800			87839	9952;677	61109	61210	97583;97584	97583					-0.025794132074452136
VSKEGTEAW	9	Unmodified	_VSKEGTEAW_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	503.74560546875	2	503.745639	1005.47673	-0.74299	-0.00037428	0.94961	0.00047836	0.20663	0.00010409	503.7460067503456	34.652	0.59887	34.475	34.209	34.807	-0.17698					44	14	4	0	0	0	0.014918	2	2549	2549;2562		162.25	66.437	1	2394500			87840	9952;677	61109	61210	97585;97586	97585					-0.025794132074452136
VSKEVKNRA	9	Unmodified	_VSKEVKNRA_					0	0	0		ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	516.2800903320312	2	515.803823	1029.59309	-0.048087	-2.4803E-05	3.8555	0.0019887	3.8074	0.0019639	515.8056249803211	54.997	0.5021	54.766	54.53	55.032	-0.23087					31	13	3	0	0	0	0.024541	1	5910	5910		32.812	6.0163	1	838980			87841	7929	61110	61211	97587	97587					0.07947950083121214
VSKILRNIT	9	Unmodified	_VSKILRNIT_					0	0	0		ENST00000561300.1_1_15:52073311-52075052:+|nuORF	ENST00000561300.1_1_15:52073311-52075052:+|nuORF	ENST00000561300.1_1_15:52073311-52075052:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	521.7584228515625	2	522.332216	1042.64988	0.43186	0.00022557	3.3818	0.0017664	3.8137	0.001992	522.3338192964396	58.919	0.48599	58.737	58.466	58.952	-0.18134					18	11	2	0	0	0	0.024511	1	6474	6474		32.812	0	1	260920			87842	16824	61111	61212	97588	97588					0.13025997639647358
VSKIVGKW	8	Unmodified	_VSKIVGKW_					0	0	0		ENST00000565364.1_1_16:88907121-88909575:-|nuORF;ENSG00000141012|ENST00000268695|GALNS;ENST00000568613.5_1_16:88880849-88909575:-|nuORF	ENST00000565364.1_1_16:88907121-88909575:-|nuORF	ENST00000565364.1_1_16:88907121-88909575:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	458.7823486328125	2	458.78437	915.554188	-0.36637	-0.00016809	-4.3538	-0.0019974	-4.7201	-0.0021655	458.78232764808456	21.975	1.0343	21.784	21.468	22.502	-0.19072					54	21	4	0	0	0	0.50239	2	730	730;742		85.359	15.85	1	1723100			87843	5462	61112	61213	97589;97590	97589					0.09303269519421065
VSKIVGKW	8	Unmodified	_VSKIVGKW_					0	0	0		ENST00000565364.1_1_16:88907121-88909575:-|nuORF;ENSG00000141012|ENST00000268695|GALNS;ENST00000568613.5_1_16:88880849-88909575:-|nuORF	ENST00000565364.1_1_16:88907121-88909575:-|nuORF	ENST00000565364.1_1_16:88907121-88909575:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.7823791503906	2	458.78437	915.554188	-0.51937	-0.00023828	-4.2631	-0.0019559	-4.7825	-0.0021941	458.7824016470786	21.941	1.0939	21.739	21.421	22.515	-0.20199					56	22	4	0	0	0	0.35998	1	712	712		102.77	25.456	1	1801000			87844	5462	61112	61213	97591	97591					0.09303269519421065
VSKIVGKW	8	Unmodified	_VSKIVGKW_					0	0	0		ENST00000565364.1_1_16:88907121-88909575:-|nuORF;ENSG00000141012|ENST00000268695|GALNS;ENST00000568613.5_1_16:88880849-88909575:-|nuORF	ENST00000565364.1_1_16:88907121-88909575:-|nuORF	ENST00000565364.1_1_16:88907121-88909575:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	458.78437	915.554188	0.46893	0.00021514	-5.2596	-0.002413	-4.7907	-0.0021979	458.78195444665	21.843	1.0817	21.666	21.35	22.432	-0.17721	-0.06348	-0.00057342	NaN	102.77	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1871600			87845	5462	61112	61213							0.09303269519421065
VSKKANQQL	9	Unmodified	_VSKKANQQL_					0	0	0		ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.3004150390625	2	508.298373	1014.58219	-0.094834	-4.8204E-05	3.6158	0.0018379	3.521	0.0017897	508.30005686904434	47.18	0.94904	47.084	46.682	47.631	-0.096649					59	25	4	0	0	0	0.2508	3	4592	4592;4603;4615		82.241	16.437	1	3171300			87846	4731	61113	61214	97592;97593;97594	97592					0.07548547708836395
VSKKANQQL	9	Unmodified	_VSKKANQQL_					0	0	0		ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.3005676269531	2	508.298373	1014.58219	-0.010322	-5.2466E-06	3.3506	0.0017031	3.3403	0.0016979	508.29993130889443	47.524	1.0212	47.255	46.837	47.858	-0.26939					62	27	4	0	0	0	0.2508	2	4638	4638;4649		82.241	10.345	1	3765800			87847	4731	61113	61214	97595;97596	97595					0.07548547708836395
VSKKANQQL	9	Unmodified	_VSKKANQQL_					0	0	0		ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.3002624511719	2	508.298373	1014.58219	-0.24932	-0.00012673	3.3869	0.0017215	3.1376	0.0015948	508.29996232094896	47.301	0.92015	47.107	46.746	47.666	-0.19387					62	24	4	0	0	0	0.39228	2	4613	4613;4626		66.429	8.618	1	3703100			87848	4731	61113	61214	97597;97598	97597					0.07548547708836395
VSKKNKDI	8	Unmodified	_VSKKNKDI_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2637939453125	2	466.282192	930.549831	-0.18705	-8.7216E-05	-2.0159	-0.00093996	-2.2029	-0.0010272	466.28114892194276	37.87	0.38623	37.691	37.522	37.908	-0.17929					17	10	3	0	0	0	0.027866	1	3054	3054		45.952	18.07	1	290150			87849	4951	61114	61215	97599	97599					0.08177760305829906
VSKNVSGLLY	10	Unmodified	_VSKNVSGLLY_					0	0	0			REV__nc|ENSG00000188175|A8MVW5-2|HEPACAM2	REV__nc|ENSG00000188175|A8MVW5-2|HEPACAM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.7376098632812	2	540.308406	1078.60226	-1.3413	-0.00072473	-1.5123	-0.00081709	-2.8536	-0.0015418	540.3074685908664	66.505	0.25871	66.259	66.127	66.386	-0.24517					9	6	2	0	0	0	0.03519	1	7643	7643		49.442	0	1	209310	+		87850	28017	61115	61216	97600	97600					0.0661029864882039
VSKPDLITF	9	Unmodified	_VSKPDLITF_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ZNF267-GPR180|1|fusion;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2919616699219	2	510.292225	1018.5699	-0.22193	-0.00011325	-0.35513	-0.00018122	-0.57707	-0.00029447	510.29181222629063	62.439	0.90385	62.218	61.451	62.355	-0.22097					46	22	4	0	0	0	0.013065	3	7021	7010;7021;7034		171.53	54.628	1	4582500			87851	9494;16326	61116	61217	97601;97602;97603	97602					0.06135511245804537
VSKPDLITF	9	Unmodified	_VSKPDLITF_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ZNF267-GPR180|1|fusion;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.2923583984375	2	510.292225	1018.5699	-0.99511	-0.0005078	0.87647	0.00044726	-0.11864	-6.0541E-05	510.29240068454374	62.35	0.57866	62.172	61.804	62.383	-0.17781					46	14	4	0	0	0	0.015752	3	7010	7010;7019;7033		158.07	61.884	1	4922800			87852	9494;16326	61116	61217	97604;97605;97606	97604					0.06135511245804537
VSKPDLITF	9	Unmodified	_VSKPDLITF_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ZNF267-GPR180|1|fusion;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267;ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2921447753906	2	510.292225	1018.5699	-0.49886	-0.00025456	-0.16256	-8.2954E-05	-0.66142	-0.00033752	510.291922704719	62.526	0.57645	62.268	61.897	62.473	-0.25824					42	14	4	0	0	0	0.025498	3	7021	7009;7021;7034		145.16	57.401	1	5037800			87853	9494;16326	61116	61217	97607;97608;97609	97608					0.06135511245804537
VSKPDLITW	9	Unmodified	_VSKPDLITW_					0	0	0		ENSG00000146757|ENST00000328747|ZNF92	ENSG00000146757|ENST00000328747|ZNF92	ENSG00000146757|ENST00000328747|ZNF92	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7716064453125	2	529.797675	1057.5808	0.29871	0.00015825	-4.2356	-0.002244	-3.9369	-0.0020857	529.7956632455123	63.418	1.0402	63.16	62.835	63.875	-0.25824					52	26	3	0	0	0	0.024344	1	7159	7159		37.812	0	1	1265000			87854	5906	61117	61218	97610	97610					0.05430913620079991
VSKPHTKL	8	Unmodified	_VSKPHTKL_					0	0	0			REV__nc|ENSG00000065000|O14617-4|AP3D1	REV__nc|ENSG00000065000|O14617-4|AP3D1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	454.7459411621094	2	455.279452	908.544351	0.88374	0.00040235	-1.1743	-0.00053461	-0.29052	-0.00013227	455.27871569874134	54.177	0.55164	54.275	53.973	54.525	0.098015					38	15	4	0	0	0	0.027866	1	5792	5792		42.396	36.083	1	1293900	+		87855	20298	61118	61219	97611	97611					0.08642081514017264
VSKPSAPVF	9	Unmodified	_VSKPSAPVF_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.2654724121094	2	466.26601	930.517468	0.16741	7.8056E-05	-0.24174	-0.00011272	-0.074337	-3.4661E-05	466.2656336919012	46.142	0.76915	46.045	45.669	46.438	-0.096653					46	20	4	0	0	0	0.03201	2	4429	4429;4442		139.97	52.216	1	2463400			87856	7346	61119	61220	97612;97613	97612					0.04942972902847487
VSKPSAPVF	9	Unmodified	_VSKPSAPVF_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	466.265625	2	466.26601	930.517468	-0.15463	-7.2097E-05	0.1665	7.7631E-05	0.011871	5.5349E-06	466.2658591009125	46.351	0.71545	46.09	45.854	46.569	-0.26118					35	18	2	0	0	0	0.18994	1	4459	4459		90.601	33.88	1	1332500			87857	7346	61119	61220	97614	97614					0.04942972902847487
VSKPSAPVF	9	Unmodified	_VSKPSAPVF_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.265380859375	2	466.26601	930.517468	-0.86239	-0.0004021	0.7282	0.00033953	-0.13419	-6.2569E-05	466.26608268355767	46.239	0.62505	46.036	45.781	46.406	-0.20226					44	16	4	0	0	0	0.053401	2	4429	4429;4441		127.46	55.584	1	2461200			87858	7346	61119	61220	97615;97616	97615					0.04942972902847487
VSKRVRKI	8	Unmodified	_VSKRVRKI_					0	0	0			REV__ENST00000467703.1_1_3:113789475-113795805:+|nuORF	REV__ENST00000467703.1_1_3:113789475-113795805:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.305419921875	2	493.335093	984.655633	-0.49739	-0.00024538	3.6578	0.0018045	3.1604	0.0015592	493.3371306268151	69.282	0.41206	69.297	69.053	69.465	0.015129					17	10	2	0	0	0	0.027866	1	8255	8255		38.806	16.846	1	361590	+		87859	24780	61120	61221	97617	97617					0.1626914094198355
VSKSVTQGF	9	Unmodified	_VSKSVTQGF_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;ENST00000481794.5_1_5:132099854-132112889:-|nuORF	nc|ENSG00000164402|Q92599-2|SEPTIN8	nc|ENSG00000164402|Q92599-2|SEPTIN8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	476.7582092285156	2	476.758549	951.502546	0.60666	0.00028923	-0.47087	-0.00022449	0.13578	6.4735E-05	476.75823713420897	37.155	1.1293	36.962	36.414	37.543	-0.193					64	28	4	0	0	0	0.015203	3	2984	2954;2964;2984		213.85	118.03	1	4645800			87860	7274	61121	61222	97618;97619;97620	97620					0.024854810348642786
VSKSVTQGF	9	Unmodified	_VSKSVTQGF_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;ENST00000481794.5_1_5:132099854-132112889:-|nuORF	nc|ENSG00000164402|Q92599-2|SEPTIN8	nc|ENSG00000164402|Q92599-2|SEPTIN8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.7583312988281	2	476.758549	951.502546	-0.77462	-0.0003693	0.68976	0.00032885	-0.084852	-4.0454E-05	476.7588101139381	37.147	0.94029	36.927	36.528	37.468	-0.2195					60	23	4	0	0	0	0.016249	3	2975	2945;2956;2975		213.85	118.03	1	4557500			87861	7274	61121	61222	97621;97622;97623	97623					0.024854810348642786
VSKSVTQGF	9	Unmodified	_VSKSVTQGF_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;ENST00000481794.5_1_5:132099854-132112889:-|nuORF	nc|ENSG00000164402|Q92599-2|SEPTIN8	nc|ENSG00000164402|Q92599-2|SEPTIN8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	476.75811767578125	2	476.758549	951.502546	0.39379	0.00018774	-0.44892	-0.00021402	-0.055128	-2.6283E-05	476.7582567744768	37.15	1.0239	36.941	36.485	37.509	-0.2092					66	25	4	0	0	0	0.012962	3	2927	2927;2937;2949		199.89	114.73	1	4193800			87862	7274	61121	61222	97624;97625;97626	97624					0.024854810348642786
VSKTLPSTW	9	Unmodified	_VSKTLPSTW_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.784912109375	2	509.782025	1017.5495	-0.22584	-0.00011513	-1.3513	-0.00068889	-1.5772	-0.00080401	509.78133804278826	49.38	0.76399	49.279	48.803	49.567	-0.1008					22	13	2	0	0	0	0.056725	1	4967	4967		126.24	41.327	1	3332300			87863	3277	61122	61223	97627	97627					0.041423405859859486
VSKTLPSTW	9	Unmodified	_VSKTLPSTW_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.7847900390625	2	509.782025	1017.5495	-0.13783	-7.0265E-05	2.2821	0.0011634	2.1443	0.0010931	509.78314456127896	50.027	1.2111	49.747	48.934	50.145	-0.27977					95	31	4	0	0	0	0.056725	1	4998	4998		126.24	41.327	1	15314000			87864	3277	61122	61223	97628	97628					0.041423405859859486
VSKTLPSTW	9	Unmodified	_VSKTLPSTW_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.78472900390625	2	509.782025	1017.5495	0.29137	0.00014854	2.0532	0.0010467	2.3445	0.0011952	509.78295952296355	49.877	1.0929	49.696	49.002	50.094	-0.18071					89	28	5	0	0	0	0.034407	1	4974	4974		138.06	44.867	1	15032000			87865	3277	61122	61223	97629	97629					0.041423405859859486
VSKTNFVDKG	10	Unmodified	_VSKTNFVDKG_					0	0	0			REV__ENSG00000171155|ENST00000304661|C1GALT1C1	REV__ENSG00000171155|ENST00000304661|C1GALT1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	548.2760620117188	2	547.795663	1093.57677	-0.95502	-0.00052316	0.49058	0.00026874	-0.46444	-0.00025442	547.7958828122147	62.041	0.80754	61.863	61.576	62.383	-0.17781					48	20	3	0	0	0	0.03519	1	6964	6964		70.816	8.7088	1	1536900	+		87866	26549	61123	61224	97630	97630					0.03372824126358864
VSKTSIGW	8	Unmodified	_VSKTSIGW_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.2427062988281	2	439.242535	876.470518	-1.1006	-0.00048343	1.2882	0.00056581	0.18757	8.2388E-05	439.2429352160593	44.646	0.69752	44.547	44.244	44.942	-0.099445					40	17	3	0	0	0	0.095325	2	4176	4176;4186		161.9	64.426	1	1824600			87867	186	61124	61225	97631;97632	97631					0.02734113351709766
VSKTSIGW	8	Unmodified	_VSKTSIGW_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	439.2426452636719	2	439.242535	876.470518	-0.71925	-0.00031592	0.74803	0.00032857	0.028778	1.2641E-05	439.24272890239865	44.837	0.83968	44.585	44.318	45.157	-0.25252					45	21	3	0	0	0	0.12938	2	4194	4194;4205		152.47	59.275	1	1900200			87868	186	61124	61225	97633;97634	97633					0.02734113351709766
VSKTSIGW	8	Unmodified	_VSKTSIGW_					0	0	0		BIRC6-SPAST|1|fusion;ENSG00000115760|ENST00000421745|BIRC6	BIRC6-SPAST|1|fusion	BIRC6-SPAST|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.2423400878906	2	439.242535	876.470518	-0.28214	-0.00012393	0.54536	0.00023955	0.26322	0.00011562	439.2426271376864	44.827	0.82537	44.616	44.327	45.153	-0.21109					44	21	3	0	0	0	0.28835	2	4189	4189;4198		116.9	42.649	1	2020200			87869	186	61124	61225	97635;97636	97635					0.02734113351709766
VSKVALLAQP	10	Unmodified	_VSKVALLAQP_					0	0	0			REV__nc|ENSG00000115266|O95996-3|APC2	REV__nc|ENSG00000115266|O95996-3|APC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2869873046875	2	513.321317	1024.62808	-0.00067693	-3.4748E-07	3.5024	0.0017979	3.5017	0.0017975	513.3228706007313	72.285	0.20193	72.008	71.868	72.07	-0.2769					5	4	2	0	0	0	0.03519	1	8462	8462		31.53	3.6476	1	45683	+		87870	22184	61125	61226	97637	97637					0.11675192891107145
VSKVKKLK	8	Unmodified	_VSKVKKLK_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.29864501953125	2	465.328945	928.643337	1.0303	0.00047942	-0.80079	-0.00037263	0.2295	0.00010679	465.328404408048	18.144	0.34339	17.988	17.805	18.148	-0.15637					13	6	3	0	0	0	0.027866	1	270	270		3.6843	0	1	136390			87871	3837	61126	61227	97638	97638					0.17616104478929628
VSKVKKLK	8	Unmodified	_VSKVKKLK_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B;KDM3B|p.K924Sfs*12|1|0.32|ENSG00000120733|chr5:138393309-138393309|G/-|frameshift_variant	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.29864501953125	2	465.328945	928.643337	0.081978	3.8147E-05	-0.05257	-2.4462E-05	0.029408	1.3684E-05	465.3288340946937	18.193	0.44576	17.99	17.767	18.212	-0.20371					15	8	3	0	0	0	0.027866	1	274	274		10.866	3.6722	1	128380			87872	3837	61126	61227	97639	97639					0.17616104478929628
VSKVREKA	8	Unmodified	_VSKVREKA_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	REV__nc|ENSG00000197969|Q96RL7-3|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	458.7822570800781	2	458.782359	915.550165	0.46894	0.00021514	-0.8755	-0.00040166	-0.40656	-0.00018652	458.78195444665	21.843	1.0817	21.666	21.35	22.432	-0.17721					54	22	4	0	0	0	0.53523	3	718	708;718;731		82.305	10.189	1	1871600	+		87873	28369	61127	61228	97640;97641;97642	97641					0.08901180025702615
VSKVSTTW	8	Unmodified	_VSKVSTTW_					0	0	0		ENST00000477822.2_1_6:153294165-153294291:-|nuORF;nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5	ENST00000477822.2_1_6:153294165-153294291:-|nuORF	ENST00000477822.2_1_6:153294165-153294291:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.2476501464844	2	454.247818	906.481082	-0.57617	-0.00026173	0.1974	8.967E-05	-0.37877	-0.00017206	454.2477832795687	39.214	0.78125	39.049	38.795	39.576	-0.16458					40	20	3	0	0	0	0.020786	1	3306	3306		205.58	83.406	1	2215100			87874	3163	61128	61229	97643	97643					0.024100960061332444
VSKVSTTW	8	Unmodified	_VSKVSTTW_					0	0	0		ENST00000477822.2_1_6:153294165-153294291:-|nuORF;nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5	ENST00000477822.2_1_6:153294165-153294291:-|nuORF	ENST00000477822.2_1_6:153294165-153294291:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	454.2474060058594	2	454.247818	906.481082	-0.56541	-0.00025684	-0.094324	-4.2846E-05	-0.65974	-0.00029968	454.2476173605977	39.304	0.67311	39.08	38.789	39.462	-0.22311					45	17	4	0	0	0	0.094045	1	3312	3312		162.25	32.57	1	2032400			87875	3163	61128	61229	97644	97644					0.024100960061332444
VSKVSTTW	8	Unmodified	_VSKVSTTW_					0	0	0		ENST00000477822.2_1_6:153294165-153294291:-|nuORF;nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5	ENST00000477822.2_1_6:153294165-153294291:-|nuORF	ENST00000477822.2_1_6:153294165-153294291:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	454.2477722167969	2	454.247818	906.481082	-0.011152	-5.0657E-06	-0.70494	-0.00032022	-0.71609	-0.00032528	454.24735852649593	39.3	0.58499	39.075	38.771	39.356	-0.2257					45	15	4	0	0	0	0.0039648	2	3305	3295;3305		221.33	78.22	1	2167100			87876	3163	61128	61229	97645;97646	97646					0.024100960061332444
VSLAAIVLAV	10	Unmodified	_VSLAAIVLAV_					0	0	0		ENSG00000259330|ENST00000638170|INAFM2	ENSG00000259330|ENST00000638170|INAFM2	ENSG00000259330|ENST00000638170|INAFM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.77386474609375	2	478.312961	954.611368	-0.13798	-6.5997E-05	1.3262	0.00063434	1.1882	0.00056834	478.31290084799593	69	1.0296	69.015	68.682	69.712	0.015121					48	26	3	0	0	0	0.03519	1	8237	8237		45.952	5.1738	1	541660			87877	10935	61129	61230	97647	97647					0.13224692005110228
VSLAALAQT	9	Unmodified	_VSLAALAQT_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	436.7398376464844	2	437.255643	872.496732	0.19847	8.6782E-05	-0.46045	-0.00020133	-0.26198	-0.00011455	437.25526537922565	66.988	0.74176	67.012	66.812	67.554	0.023911					28	17	3	0	0	0	0.022832	1	7904	7904		71.877	24.22	1	165710	+		87878	24328	61130	61231	97648	97648					0.055383825231729134
VSLCNPER	8	Unmodified	_VSLCNPER_					0	0	0		nc|ENSG00000189195|Q5XKL5|BTBD8;nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5|BTBD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2292175292969	2	459.229102	916.443651	0.3675	0.00016877	-0.61356	-0.00028176	-0.24606	-0.000113	459.2287585744806	28.569	0.95608	28.65	28.289	29.245	0.080811					47	23	3	0	0	0	0.89627	1	1631	1631		51.335	0	1	1435900			87879	18612	61131	61232	97649	97649					-0.017913185311272173
VSLCPKVEVP	10	Unmodified	_VSLCPKVEVP_					0	0	0			REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.7977294921875	2	535.79936	1069.58417	0.11248	6.0265E-05	-3.124	-0.0016738	-3.0115	-0.0016136	535.7975379391108	89.057	2.0047	89.035	88.266	90.271	-0.021645					90	47	4	0	0	0	0.55353	1	11215	11215		82.241	0	1	2767100	+		87880	21667	61132	61233	97650	97650					0.05215840402433969
VSLDNCVEV	9	Unmodified	_VSLDNCVEV_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.7769775390625	2	489.23405	976.453547	-0.89264	-0.00043671	2.3008	0.0011256	1.4081	0.00068891	489.2353986180031	61.851	0.40046	61.914	61.582	61.983	0.062767					14	10	2	0	0	0	0.024261	1	7048	7048		54.776	0	1	117940			87881	10161	61133	61234	97651	97651					-0.035621753164150505
VSLDRYLKI	9	Unmodified	_VSLDRYLKI_					0	0	0		ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8301391601562	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	0.89441	1	11001	11001		32.812	0	1	6921700			87882	4081	61134	61235	97652	97652					0.10094577919790026
VSLEAQVLP	9	Unmodified	_VSLEAQVLP_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3;REV__nc|ENSG00000150995|Q14643-4|ITPR1	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.2800598144531	2	478.276575	954.538597	0.11713	5.6023E-05	-3.8733	-0.0018525	-3.7562	-0.0017965	478.27479179991076	21.305	0.63599	21.377	20.91	21.546	0.071487					20	12	2	0	0	0	0.024261	1	578	578		45.972	0	1	54645	+		87883	20986;24742	61135	61236	97653	97653					0.0595093821170849
VSLFWGWAR	9	Unmodified	_VSLFWGWAR_					0	0	0		nc|ENSG00000186153|Q9NZC7-6|WWOX	nc|ENSG00000186153|Q9NZC7-6|WWOX	nc|ENSG00000186153|Q9NZC7-6|WWOX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.7824096679688	2	561.298176	1120.5818	0.22226	0.00012476	-0.34822	-0.00019546	-0.12596	-7.0701E-05	561.2985758029806	64.393	0.4103	64.393	64.168	64.578	0					17	10	2	0	0	0	0.024381	1	7607	7607		29.15	0	1	168930			87884	18595	61136	61237	97654	97654					0.026331727796332416
VSLGGSALPL	10	Unmodified	_VSLGGSALPL_					0	0	0		SALL3|p.P1252Lfs*52|1|0.12|ENSG00000256463|chr18:78997169-78997169|C/-|frameshift_variant	SALL3|p.P1252Lfs*52|1|0.12|ENSG00000256463|chr18:78997169-78997169|C/-|frameshift_variant	SALL3|p.P1252Lfs*52|1|0.12|ENSG00000256463|chr18:78997169-78997169|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.2607727050781	2	457.271293	912.528032	0.28187	0.00012889	-3.8512	-0.001761	-3.5693	-0.0016322	457.26881306820303	78.062	1.0323	78.062	77.209	78.242	0					43	24	3	0	0	0	0.03519	1	9624	9624		29.15	8.2026	1	805220			87885	37851	61137	61238	97655	97655					0.06826955557278325
VSLGRPVL	8	Unmodified	_VSLGRPVL_					0	0	0		nc|ENSG00000165240|Q04656-3|ATP7A;ENST00000506043.1_1_X:77218070-77218340:+|nuORF	nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.7689208984375	2	420.76872	839.522887	0.50302	0.00021165	-0.19421	-8.1716E-05	0.30881	0.00012994	420.7684988776988	58.624	1.4237	58.624	57.91	59.333	0					91	38	4	0	0	0	0.6248	1	6647	6647		73.975	2.679	1	2788200			87886	18464	61138	61239	97656	97656					0.09670696485306962
VSLHGYDHQLW	11	Unmodified	_VSLHGYDHQLW_					0	0	0			REV__nc|ENSG00000134824|O95864-4|FADS2	REV__nc|ENSG00000134824|O95864-4|FADS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	451.7743225097656	3	452.222805	1353.64658	0.33341	0.00015078	-1.1772	-0.00053235	-0.84378	-0.00038158	452.2223692129647	21.058	0.78302	20.862	20.632	21.415	-0.19577					26	15	3	0	0	0	0.024731	1	659	659		30.569	0	1	33437	+		87887	23486	61139	61240	97657	97657					-0.016092972050273602
VSLILNKH	8	Unmodified	_VSLILNKH_					0	0	0		ENST00000307333.7_1_4:80975433-80976353:-|nuORF	ENST00000307333.7_1_4:80975433-80976353:-|nuORF	ENST00000307333.7_1_4:80975433-80976353:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.21978759765625	2	462.287277	922.560001	-0.37654	-0.00017407	-2.2342	-0.0010329	-2.6108	-0.0012069	462.28584273916204	60.409	0.34632	60.196	60	60.347	-0.2134					12	8	2	0	0	0	0.027866	1	6919	6919		65.803	5.5092	1	79574			87888	12011	61140	61241	97658	97658					0.09562368031083679
VSLITSELI	9	Unmodified	_VSLITSELI_					0	0	0		TTPA|p.V144L|1|0.06|ENSG00000137561|chr8:63066026-63066026|C/A|missense_variant;ENSG00000137561|ENST00000260116|TTPA	TTPA|p.V144L|1|0.06|ENSG00000137561|chr8:63066026-63066026|C/A|missense_variant	TTPA|p.V144L|1|0.06|ENSG00000137561|chr8:63066026-63066026|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79144287109375	2	487.792058	973.569563	-0.24082	-0.00011747	0.11959	5.8333E-05	-0.12124	-5.9139E-05	487.792085501976	78.306	1.7835	78.306	77.918	79.701	0					134	42	6	0	0	0	0.43973	1	9743	9743		63.306	5.8536	1	11242000			87889	5136	61141	61242	97659	97659					0.08172091525955238
VSLKGRSEP	9	Unmodified	_VSLKGRSEP_					0	0	0			REV__ENST00000380062.9_1_9:26956414-26962023:+|nuORF	REV__ENST00000380062.9_1_9:26956414-26962023:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.74267578125	2	486.777274	971.539994	-0.36066	-0.00017556	-0.54394	-0.00026478	-0.9046	-0.00044034	486.7769839018573	41.78	1.0672	41.648	41.319	42.386	-0.13219					90	30	5	0	0	0	0.024288	1	3807	3807		62.107	3.3255	1	14812000	+		87890	31460	61142	61243	97660	97660					0.053085723004642205
VSLKIFGKMNL	11	Oxidation (M)	_VSLKIFGKM(Oxidation (M))NL_		VSLKIFGKM(1)NL		VSLKIFGKM(41)NL	0	0	1		ENSG00000158077|ENST00000299481|NLRP14;NLRP14|p.M350*|1|0.37|ENSG00000158077|chr11:7043072-7043072|C/-|frameshift_variant	ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.3692626953125	2	633.367941	1264.72133	0.56004	0.00035471	1.3433	0.00085083	1.9034	0.0012055	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	0.97926	1	12226	12226		41.427	6.2746	1	8480900			87891	6643	61143	61244	97661	97661		274			0.09955749282039505
VSLKMGHVKLV	11	Unmodified	_VSLKMGHVKLV_					0	0	0		ENSG00000105072|ENST00000221671|C19orf44;nc|nan|Q9H6X5-2|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	ENSG00000105072|ENST00000221671|C19orf44	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	605.8721923828125	2	605.870651	1209.72675	-0.099911	-6.0533E-05	2.5327	0.0015345	2.4328	0.001474	605.8719802701046	98.576	1.0775	98.586	98.19	99.268	0.010231					67	24	4	0	0	0	1.0592	1	12569	12569		22.58	0.89391	1	1246300			87892	2632	61144	61245	97662	97662					0.13027472864496303
VSLLCRIW	8	Unmodified	_VSLLCRIW_					0	0	0		ENST00000395422.3_1_7:56169324-56169396:-|nuORF	ENST00000395422.3_1_7:56169324-56169396:-|nuORF	ENST00000395422.3_1_7:56169324-56169396:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7776794433594	2	495.28368	988.552807	-0.3896	-0.00019296	-2.7918	-0.0013827	-3.1814	-0.0015757	495.28242430354726	21.359	0.71851	21.269	21.059	21.778	-0.090094					33	14	4	0	0	0	0.027866	1	645	645		24.203	0	1	403960			87893	13518	61145	61246	97663	97663					0.05807312159004141
VSLLEKLQP	9	Unmodified	_VSLLEKLQP_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;CCNB3|p.T485Hfs*37|1|0.3|ENSG00000147082|chrX:50309615-50309616|-/C|frameshift_variant;CCNB3|p.K727Nfs*5|1|0.06|ENSG00000147082|chrX:50310350-50310350|G/-|frameshift_variant	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.8034057617188	2	513.813325	1025.6121	-0.19401	-9.9686E-05	0.18548	9.5301E-05	-0.0085344	-4.3851E-06	513.8133266517965	60.138	0.84927	59.962	59.554	60.403	-0.1761					51	21	3	0	0	0	0.024511	1	6622	6622		19.104	0	1	1589600			87894	5929	61146	61247	97664	97664					0.10031486654179389
VSLLKKLL	8	Unmodified	_VSLLKKLL_					0	0	0		nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;ENSG00000169302|ENST00000397936|STK32A	nc|ENSG00000169302|Q8WU08-3|STK32A	nc|ENSG00000169302|Q8WU08-3|STK32A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.313232421875	2	457.325871	912.637189	-1.0918	-0.00049931	4.4543	0.002037	3.3624	0.0015377	457.3280679562807	44.502	0.3675	44.357	44.194	44.561	-0.14471					14	10	2	0	0	0	0.027866	1	4263	4263		40.573	0	1	133390			87895	7926	61147	61248	97665	97665					0.17737586247415038
VSLLRPRSH	9	Unmodified	_VSLLRPRSH_					0	0	0			REV__ENST00000475243.5_1_20:57019667-57019796:+|nuORF	REV__ENST00000475243.5_1_20:57019667-57019796:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8035278320312	2	532.819807	1063.62506	-0.52145	-0.00027784	-0.27643	-0.00014728	-0.79788	-0.00042512	532.8191473722114	42.318	1.0642	42.186	41.716	42.78	-0.13219					57	30	3	0	0	0	0.024447	1	3839	3839		40.778	10.46	1	683300	+		87896	33291	61148	61249	97666	97666					0.09579362556928572
VSLLRPRSH	9	Unmodified	_VSLLRPRSH_					0	0	0			REV__ENST00000475243.5_1_20:57019667-57019796:+|nuORF	REV__ENST00000475243.5_1_20:57019667-57019796:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.819807	1063.62506	-0.29513	-0.00015725	2.2315	0.001189	1.9364	0.0010318	532.8207288611801	42.129	0.60086	42.129	41.688	42.289	0	-0.047526	0.00094628	NaN	40.778	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758830	+		87897	33291	61148	61249							0.09579362556928572
VSLLRPRSH	9	Unmodified	_VSLLRPRSH_					0	0	0			REV__ENST00000475243.5_1_20:57019667-57019796:+|nuORF	REV__ENST00000475243.5_1_20:57019667-57019796:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	532.819807	1063.62506	-0.42751	-0.00022779	-0.065566	-3.4935E-05	-0.49308	-0.00026272	532.8194618770815	42.189	0.93343	42.215	41.821	42.754	0.026016	0.038167	-0.0015016	NaN	40.778	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720840	+		87898	33291	61148	61249							0.09579362556928572
VSLMTLDSI	9	Unmodified	_VSLMTLDSI_					0	0	0		nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.76116943359375	2	489.762443	977.510333	0.13651	6.6856E-05	-1.1303	-0.00055356	-0.99375	-0.0004867	489.761533403093	86.927	1.6395	86.892	86.129	87.769	-0.035362					89	38	5	0	0	0	0.11848	2	10889	10889;10901		106.42	3.6419	1	2005300			87899	9521	61149	61250	97667;97668	97667					0.020678722401157756
VSLMTLDSI	9	Unmodified	_VSLMTLDSI_					0	0	0		nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	489.76116943359375	2	489.762443	977.510333	0.017638	8.6386E-06	-0.99333	-0.00048649	-0.97569	-0.00047786	489.76159588819837	86.899	1.8773	86.92	86.113	87.991	0.021255					84	44	4	0	0	0	0.074956	1	10862	10862		119.56	20.182	1	1917500			87900	9521	61149	61250	97669	97669					0.020678722401157756
VSLNSPLESL	10	Unmodified	_VSLNSPLESL_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	529.3165893554688	2	529.790047	1057.56554	-0.9641	-0.00051077	-0.79884	-0.00042322	-1.7629	-0.00093399	529.7902010752462	81.983	0.64983	81.983	81.671	82.321	0					21	15	2	0	0	0	0.03519	1	10212	10212		36.447	8.5645	1	116130	+		87901	23931	61150	61251	97670	97670					0.03906002032226752
VSLRARNGH	9	Unmodified	_VSLRARNGH_					0	0	0		ENST00000378078.4_1_9:35757314-35757347:+|nuORF	ENST00000378078.4_1_9:35757314-35757347:+|nuORF	ENST00000378078.4_1_9:35757314-35757347:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	505.7579345703125	2	505.286131	1008.55771	-0.24645	-0.00012453	0.2792	0.00014107	0.032745	1.6545E-05	505.285993853598	100.94	0.59653	100.95	100.74	101.34	0.0090332					21	13	2	0	0	0	0.024427	1	12862	12862		34.173	0	1	116320			87902	13226	61151	61252	97671	97671					0.05377332345983632
VSLREEISI	9	Unmodified	_VSLREEISI_					0	0	0		ENST00000576089.1_1_6:125581120-125581456:+|nuORF	ENST00000576089.1_1_6:125581120-125581456:+|nuORF	ENST00000576089.1_1_6:125581120-125581456:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2688598632812	2	523.298039	1044.58152	-0.28738	-0.00015038	0.23767	0.00012437	-0.049707	-2.6012E-05	523.2978872815077	42.602	0.62064	42.37	41.837	42.457	-0.23186					23	16	3	0	0	0	0.024523	1	3754	3754		21.96	0	1	254720			87903	17106	61152	61253	97672	97672					0.06101708269147821
VSLREEISI	9	Unmodified	_VSLREEISI_					0	0	0		ENST00000576089.1_1_6:125581120-125581456:+|nuORF	ENST00000576089.1_1_6:125581120-125581456:+|nuORF	ENST00000576089.1_1_6:125581120-125581456:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	523.298039	1044.58152	-0.26779	-0.00014014	0.010983	5.7474E-06	-0.25681	-0.00013439	523.2979792284984	42.609	0.41424	42.383	42.07	42.484	-0.22597	0.044494	-0.00015348	NaN	29.15	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230290			87904	17106	61152	61253							0.06101708269147821
VSLRFSVVD	9	Unmodified	_VSLRFSVVD_					0	0	0			REV__ITGA5|p.Q776L|1|0.22|ENSG00000161638|chr12:54401645-54401645|T/A|missense_variant	REV__ITGA5|p.Q776L|1|0.22|ENSG00000161638|chr12:54401645-54401645|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2821960449219	2	511.287474	1020.5604	-0.91911	-0.00046993	0.7397	0.0003782	-0.17941	-9.1728E-05	511.28770919198604	56.03	0.80213	56.128	55.744	56.546	0.097893					27	14	2	0	0	0	0.024344	1	6103	6103		45.972	0	1	2242800	+		87905	25390	61153	61254	97673	97673					0.05093742960286818
VSLRKSIAE	9	Unmodified	_VSLRKSIAE_					0	0	0			REV__ENSG00000155636|ENST00000286070|RBM45	REV__ENSG00000155636|ENST00000286070|RBM45	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.8027038574219	2	501.800749	1001.58694	-0.28537	-0.0001432	3.5794	0.0017962	3.2941	0.001653	501.8023893203948	57.212	0.59213	57.307	56.911	57.503	0.095306					41	15	4	0	0	0	0.43628	1	6342	6342		63.534	3.4156	1	3049400	+		87906	25016	61154	61255	97674	97674					0.08621431851599937
VSLRLGDLVW	10	Unmodified	_VSLRLGDLVW_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.3360595703125	2	579.337498	1156.66044	-0.091528	-5.3026E-05	0.40381	0.00023394	0.31228	0.00018092	579.3376457206588	83.931	0.73303	83.793	83.547	84.28	-0.13789					37	16	4	0	0	0	0.65479	1	10126	10126		70.816	19.624	1	628890			87907	5433	61155	61256	97675	97675					0.08837980294106274
VSLRLGDLVW	10	Unmodified	_VSLRLGDLVW_					0	0	0		nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-5|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF	nc|ENSG00000140632|Q49A26-2|GLYR1	nc|ENSG00000140632|Q49A26-2|GLYR1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	579.337498	1156.66044	-0.0088556	-5.1304E-06	0.15178	8.793E-05	0.14292	8.28E-05	579.3374828366217	83.916	0.77477	83.747	83.451	84.225	-0.16916	-0.043591	0.00012518	NaN	70.816	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567740			87908	5433	61155	61256							0.08837980294106274
VSLRLRRR	8	Unmodified	_VSLRLRRR_					0	0	0			REV__ENSG00000167513|ENST00000301019|CDT1	REV__ENSG00000167513|ENST00000301019|CDT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2953491210938	2	528.349066	1054.68358	-0.15528	-8.2044E-05	1.4148	0.00074752	1.2595	0.00066548	528.3497986979986	45.175	0.27279	45.219	45.038	45.311	0.04388					13	7	2	0	0	0	0.027866	1	4316	4316		25.45	11.675	1	125770	+		87909	26147	61156	61257	97676	97676					0.15842463922081151
VSLRPVGL	8	Unmodified	_VSLRPVGL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	420.7690124511719	2	420.76872	839.522887	0.78549	0.00033051	-0.47807	-0.00020116	0.30742	0.00012935	420.7683962743981	58.846	1.1558	58.659	58.03	59.186	-0.18705					78	31	4	0	0	0	0.50239	1	6661	6661		85.359	0	1	2790100			87910	8829	61157	61258	97677	97677					0.096706964853297
VSLRPVGL	8	Unmodified	_VSLRPVGL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	420.7688293457031	2	420.76872	839.522887	0.50857	0.00021399	-0.25002	-0.0001052	0.25855	0.00010879	420.768482066788	58.46	1.2323	58.551	57.908	59.14	0.091217					85	33	4	0	0	0	0.43637	1	6552	6552		92.191	0	1	2754900			87911	8829	61157	61258	97678	97678					0.096706964853297
VSLRRRGRGLL	11	Unmodified	_VSLRRRGRGLL_					0	0	0		ENST00000405515.5_2_11:67957596-67981223:-|nuORF	ENST00000405515.5_2_11:67957596-67981223:-|nuORF	ENST00000405515.5_2_11:67957596-67981223:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	641.8822631835938	2	641.912562	1281.81057	0.55868	0.00035862	-3.4557	-0.0022182	-2.897	-0.0018596	641.9094262785786	95.799	0.12929	95.799	95.735	95.864	0					4	2	2	0	0	0	0.024795	1	12206	12206		28.081	12.44	1	46376			87912	13720	61158	61259	97679	97679					0.1809376507642355
VSLSDKRLY	9	Unmodified	_VSLSDKRLY_					0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant;REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	540.3267822265625	2	540.806031	1079.59751	-0.98564	-0.00053304	0.16614	8.9848E-05	-0.8195	-0.00044319	540.8060519004927	49.174	0.53246	48.992	48.773	49.305	-0.18206					20	13	2	0	0	0	0.024477	1	4890	4890		35.618	8.8222	1	245800	+		87913	19182;20344	61159	61260	97680	97680					0.060894145060501614
VSLSGLVVFL	10	Unmodified	_VSLSGLVVFL_					0	0	0			REV__XKR4|p.F150L|1|0.21|ENSG00000206579|chr8:55102936-55102936|T/C|missense_variant	REV__XKR4|p.F150L|1|0.21|ENSG00000206579|chr8:55102936-55102936|T/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.2960205078125	2	517.318243	1032.62193	-0.32707	-0.0001692	3.4011	0.0017595	3.0741	0.0015903	517.3196255724835	78.439	0.73184	78.185	77.868	78.6	-0.25471					33	16	3	0	0	0	0.03519	1	9382	9382		35.618	19.145	1	257440	+		87914	37787	61160	61261	97681	97681					0.10692674659571821
VSLSPIVIL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VSLSPIVIL_					1	0	0			REV__ADAM21|p.L684S|1|0.12|ENSG00000139985|chr14:70459550-70459550|T/C|missense_variant	REV__ADAM21|p.L684S|1|0.12|ENSG00000139985|chr14:70459550-70459550|T/C|missense_variant	MSMS	OPSCC_39_ClassI_Rep-2	2	491.8128662109375	2	491.812793	981.611034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.91	101.41	102.41	0.0073471								0	0	0	0.41814	1	13015	13015		60.294	14.342	1		+		87915	19063	61161	61262	97682	97682					0.11949272285266943
VSLTLPKVV	9	Unmodified	_VSLTLPKVV_					0	0	0			REV__sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	REV__sp|P03228|BARF1_EBVB9SecretedproteinBARF1OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BARF1PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.7738037109375	2	478.312961	954.611368	0.69189	0.00033094	0.77572	0.00037104	1.4676	0.00070197	478.31245938668076	69.301	0.95926	69.009	68.634	69.593	-0.29292					49	24	3	0	0	0	0.024205	1	8335	8335		35.618	0	1	447610	+		87916	37550	61162	61263	97683	97683					0.13224692005132965
VSLTNMICD	9	Unmodified	_VSLTNMICD_					0	0	0			REV__ENST00000478631.6_2_1:53460811-53461279:+|nuORF	REV__ENST00000478631.6_2_1:53460811-53461279:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	498.2558288574219	2	498.230453	994.446353	0.26056	0.00012982	-4.1401	-0.0020627	-3.8795	-0.0019329	498.22807509405976	43.515	0.28826	43.546	43.376	43.664	0.030827					9	7	2	0	0	0	0.023817	1	4042	4042		60.972	0	1	71140	+		87917	33374	61163	61264	97684	97684					-0.0510923118847586
VSLVMSVSAS	10	Unmodified	_VSLVMSVSAS_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2579040527344	2	490.260068	978.505582	0.3017	0.00014791	-4.4617	-0.0021874	-4.16	-0.0020395	490.2579247393755	104.86	1.8775	104.86	104.24	106.12	0					147	58	5	0	0	0	1.089	1	13439	13439		34.173	3.8548	1	6618800	+		87918	23118	61164	61265	97685	97685					0.015469880973682848
VSMLKKLLK	9	Unmodified	_VSMLKKLLK_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.2825317382812	2	530.351563	1058.68857	-1.4207	-0.00075345	2.522	0.0013376	1.1014	0.00058412	530.353592180082	39.771	0.25846	39.659	39.534	39.792	-0.11223					11	6	2	0	0	0	0.024541	1	3421	3421		12.959	9.5492	1	97828	+		87919	35120	61165	61266	97686	97686					0.16157586949816505
VSMLKKLLK	9	Unmodified	_VSMLKKLLK_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.3003540039062	2	530.351563	1058.68857	-0.1115	-5.9135E-05	3.1409	0.0016658	3.0294	0.0016067	530.3531216520688	38.844	0.14577	38.618	38.523	38.669	-0.2257					5	3	2	0	0	0	0.024541	1	3219	3219		18.324	12.012	1	63036	+		87920	35120	61165	61266	97687	97687					0.16157586949816505
VSMTVDKTV	9	Oxidation (M)	_VSM(Oxidation (M))TVDKTV_		VSM(1)TVDKTV		VSM(110)TVDKTV	0	0	1		ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	498.2553405761719	2	498.257525	994.500497	-0.58527	-0.00029161	-3.757	-0.001872	-4.3423	-0.0021636	498.25571524542835	43.458	0.99628	43.458	43.186	44.183	0					81	27	4	0	0	0	0.10174	1	4061	4061		110.12	6.0631	1	13141000			87921	14070	61166	61267	97688	97688		501			0.0030268423474808515
VSMYLYCNL	9	Unmodified	_VSMYLYCNL_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.2894897460938	2	553.256471	1104.49839	0.1519	8.4042E-05	3.9541	0.0021876	4.106	0.0022717	553.2586269922795	41.828	0.34216	41.828	41.579	41.921	0					14	9	2	0	0	0	0.024447	1	3785	3785		40.778	24.305	1	94744			87922	3630	61167	61268	97689	97689					-0.049680677747346635
VSMYLYCNL	9	Unmodified	_VSMYLYCNL_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	553.256471	1104.49839	-0.61727	-0.00034151	4.1247	0.002282	3.5075	0.0019405	553.2584294548068	41.991	0.4838	41.859	41.565	42.049	-0.1322	-0.033214	0.00026549	NaN	40.778	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132980			87923	3630	61167	61268							-0.049680677747346635
VSMYLYCNL	9	Unmodified	_VSMYLYCNL_					0	0	0		ENSG00000117472|ENST00000372003|TSPAN1;ENST00000470318.1_1_1:46650565-46651202:+|nuORF	ENSG00000117472|ENST00000372003|TSPAN1	ENSG00000117472|ENST00000372003|TSPAN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.256471	1104.49839	-0.19788	-0.00010948	3.3413	0.0018486	3.1434	0.0017391	553.2584812771049	41.964	0.47494	41.99	41.746	42.221	0.026012	0.097585	-0.00060142	NaN	40.778	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109460			87924	3630	61167	61268							-0.049680677747346635
VSNAEHNV	8	Unmodified	_VSNAEHNV_					0	0	0			REV__ENSG00000133135|ENST00000255499|RNF128;REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	435.2110900878906	2	435.209224	868.403895	0.39478	0.00017181	1.2678	0.00055174	1.6625	0.00072356	435.20913766699374	99.237	1.1755	99.068	98.461	99.637	-0.16862					64	27	3	0	0	0	1.0516	1	12299	12299		29.15	2.4566	1	223920	+		87925	36668;23358	61168	61269	97690	97690					-0.03557122210190755
VSNHYGGLDG	10	Unmodified	_VSNHYGGLDG_					0	0	0		nc|ENSG00000138592|P40818-2|USP8;ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;ENST00000560379.1_1_15:50790733-50791282:+|nuORF	nc|ENSG00000138592|P40818-2|USP8	nc|ENSG00000138592|P40818-2|USP8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.28363037109375	2	509.733063	1017.45157	-0.17592	-8.9673E-05	-3.6921	-0.001882	-3.8681	-0.0019717	509.73096253610356	69.643	1.2799	69.421	68.768	70.048	-0.22245					52	30	2	0	0	0	0.03519	1	8137	8137		30.318	4.7437	1	104800			87926	18321	61169	61270	97691	97691					-0.05645468009981869
VSNICTKRS	9	Unmodified	_VSNICTKRS_					0	0	0		LRFN2|p.W752C|1|0.29|ENSG00000156564|chr6:40392057-40392057|C/G|missense_variant	LRFN2|p.W752C|1|0.29|ENSG00000156564|chr6:40392057-40392057|C/G|missense_variant	LRFN2|p.W752C|1|0.29|ENSG00000156564|chr6:40392057-40392057|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	504.27496337890625	2	504.268758	1006.52296	-0.34652	-0.00017474	1.5951	0.00080436	1.2486	0.00062963	504.2695513365503	65.708	1.0555	65.435	65.126	66.181	-0.27282					73	28	4	0	0	0	0.42604	1	7759	7759		64.207	6.396	1	10579000			87927	17921	61170	61271	97692	97692					0.019963284230243517
VSNIWLLN	8	Unmodified	_VSNIWLLN_					0	0	0			REV__ENSG00000157106|ENST00000446231|SMG1;REV__ENST00000566127.1_1_16:29540393-29548932:-|nuORF	REV__ENSG00000157106|ENST00000446231|SMG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	479.29095458984375	2	479.77146	957.528367	0.61656	0.00029581	-0.40653	-0.00019504	0.21003	0.00010077	479.7710427910194	68.031	0.61452	68.031	67.792	68.407	0					35	15	3	0	0	0	0.027866	1	8113	8113		51.335	0	1	410980	+		87928	25112;34514	61171	61272	97693	97693					0.04790375277138992
VSNLDRPI	8	Unmodified	_VSNLDRPI_					0	0	0			REV__ENSG00000198742|ENST00000361368|SMURF1	REV__ENSG00000198742|ENST00000361368|SMURF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	457.313232421875	2	457.258717	912.50288	-0.99201	-0.0004536	1.3227	0.0006048	0.33065	0.00015119	457.25927016007404	44.277	0.67624	44.132	43.921	44.597	-0.14471					24	19	2	0	0	0	0.027866	1	4263	4263		55.504	11.387	1	141000	+		87929	28461	61172	61273	97694	97694					0.04312900754723614
VSNLIKSI	8	Unmodified	_VSNLIKSI_					0	0	0		ENST00000245046.6_1_3:10004387-10004693:-|nuORF	ENST00000245046.6_1_3:10004387-10004693:-|nuORF	ENST00000245046.6_1_3:10004387-10004693:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2740783691406	2	437.273835	872.533118	-0.36718	-0.00016056	0.4414	0.00019301	0.074213	3.2452E-05	437.2738521152841	42.599	0.95246	42.367	42.042	42.994	-0.23186					55	24	4	0	0	0	0.38989	1	3846	3846		98.629	0	1	2836900			87930	11308	61173	61274	97695	97695					0.0917525941989652
VSNLIKSI	8	Unmodified	_VSNLIKSI_					0	0	0		ENST00000245046.6_1_3:10004387-10004693:-|nuORF	ENST00000245046.6_1_3:10004387-10004693:-|nuORF	ENST00000245046.6_1_3:10004387-10004693:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	437.2738342285156	2	437.273835	872.533118	0.04472	1.9555E-05	-0.15007	-6.5623E-05	-0.10535	-4.6068E-05	437.2736358467694	42.592	0.95535	42.366	42.07	43.025	-0.22597					51	24	3	0	0	0	0.64735	1	3847	3847		71.877	0	1	2214100			87931	11308	61173	61274	97696	97696					0.0917525941989652
VSNLVSRAW	9	Unmodified	_VSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2858276367188	2	516.285266	1030.55598	-0.24502	-0.0001265	0.2016	0.00010408	-0.043421	-2.2418E-05	516.2853636936076	52.759	0.86701	52.632	52.313	53.181	-0.12705					56	21	4	0	0	0	0.027736	3	5490	5480;5490;5502		143.37	42.121	1	1746000			87932	12533	61174	61275	97697;97698;97699	97698					0.04192278537357197
VSNLVSRAW	9	Unmodified	_VSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2850952148438	2	516.285266	1030.55598	0.65289	0.00033708	-0.56716	-0.00029282	0.085731	4.4262E-05	516.2849421241744	53.026	0.85872	52.768	52.403	53.262	-0.25839					33	21	2	0	0	0	0.013719	3	5530	5506;5517;5530		168.26	55.848	1	2015400			87933	12533	61174	61275	97700;97701;97702	97702					0.04192278537357197
VSNLVSRAW	9	Unmodified	_VSNLVSRAW_					0	0	0		ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	ENST00000343677.3_1_6:26056391-26056457:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.2854614257812	2	516.285266	1030.55598	0.016894	8.7224E-06	-0.17991	-9.2887E-05	-0.16302	-8.4164E-05	516.2851546270155	52.841	0.86033	52.652	52.348	53.208	-0.18982					36	21	2	0	0	0	0.027736	3	5484	5484;5494;5508		143.37	41.773	1	2945000			87934	12533	61174	61275	97703;97704;97705	97703					0.04192278537357197
VSNLYGTE	8	Unmodified	_VSNLYGTE_					0	0	0			REV__ENSG00000113615|ENST00000398844|SEC24A	REV__ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7144775390625	2	441.713808	881.413062	-0.088996	-3.9311E-05	2.4219	0.0010698	2.3329	0.0010305	441.71451035524495	31.353	2.4158	31.365	29.884	32.299	0.011797					188	58	5	0	0	0	0.77775	1	2087	2087		60.972	7.6205	1	2374600	+		87935	22078	61175	61276	97706	97706					-0.0323877364450027
VSNPKSFEY	9	Unmodified	_VSNPKSFEY_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;ENST00000584692.1_1_17:30533991-30534557:+|nuORF	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7603759765625	2	535.761289	1069.50803	-0.35321	-0.00018923	0.037483	2.0082E-05	-0.31572	-0.00016915	535.7612054557447	41.949	1.0365	41.826	41.491	42.527	-0.12299					83	27	5	0	0	0	0.086035	1	3750	3750		115.49	35.781	1	4368700			87936	4219	61176	61277	97707	97707					-0.023948401733150604
VSNPKSFEY	9	Unmodified	_VSNPKSFEY_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;ENST00000584692.1_1_17:30533991-30534557:+|nuORF	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7597045898438	2	535.761289	1069.50803	-0.82781	-0.00044351	0.56226	0.00030124	-0.26555	-0.00014227	535.7614530922195	42.114	0.98555	41.882	41.62	42.605	-0.23186					77	26	4	0	0	0	0.10174	3	3769	3757;3769;3780		110.12	18.917	1	4654800			87937	4219	61176	61277	97708;97709;97710	97709					-0.023948401733150604
VSNPKSFEY	9	Unmodified	_VSNPKSFEY_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;ENST00000584692.1_1_17:30533991-30534557:+|nuORF	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7608032226562	2	535.761289	1069.50803	-0.7212	-0.00038639	0.25506	0.00013665	-0.46614	-0.00024974	535.7612742747892	42.165	1.2181	41.935	41.651	42.869	-0.23029					80	32	4	0	0	0	0.10174	1	3780	3780		110.12	33.346	1	4853200			87938	4219	61176	61277	97711	97711					-0.023948401733150604
VSNPKSFEY	9	Unmodified	_VSNPKSFEY_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;ENST00000584692.1_1_17:30533991-30534557:+|nuORF	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.761289	1069.50803	-0.25277	-0.00013543	4.6208	0.0024757	4.3681	0.0023402	535.7642610376303	41.777	0.16844	41.777	41.688	41.856	0	-0.077518	0.0046442	NaN	115.49	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59583			87939	4219	61176	61277							-0.023948401733150604
VSNPPQDKL	9	Unmodified	_VSNPPQDKL_					0	0	0			REV__ENSG00000153310|ENST00000694912|CYRIB	REV__ENSG00000153310|ENST00000694912|CYRIB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.2642822265625	2	499.269281	996.52401	-0.5852	-0.00029217	3.6664	0.0018305	3.0812	0.0015383	499.27095770691034	62.223	0.63585	61.996	61.727	62.363	-0.22663					28	18	2	0	0	0	0.43628	1	7251	7251		63.534	3.4156	1	9264500	+		87940	24899	61177	61278	97712	97712					0.025608660635725755
VSNQLVTVPFT	11	Unmodified	_VSNQLVTVPFT_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.22247314453125	3	402.223923	1203.64994	0.86063	0.00034617	-3.8277	-0.0015396	-2.9671	-0.0011934	402.2224442144588	24.387	0.76801	24.213	23.743	24.511	-0.17484					44	17	4	0	0	0	1.017	1	1062	1062		33.039	0.28887	1	862370	+		87941	22204	61178	61279	97713	97713					0.05625952849004534
VSNRFRSGT	9	Unmodified	_VSNRFRSGT_					0	0	0			REV__ENSG00000138439|ENST00000392238|FAM117B	REV__ENSG00000138439|ENST00000392238|FAM117B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2694702148438	2	512.270147	1022.52574	-0.24649	-0.00012627	2.2762	0.0011661	2.0298	0.0010398	512.2709906728722	104.04	1.3639	104.04	103.63	105	0					74	36	3	0	0	0	0.86013	1	13341	13341		35.152	8.1047	1	306250	+		87942	23856	61179	61280	97714	97714					0.015379198722030196
VSNWFTYF	8	Unmodified	_VSNWFTYF_					0	0	0			REV__nc|ENSG00000164597|Q9UP83-3|COG5	REV__nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3223876953125	2	532.247818	1062.48108	-0.28331	-0.00015079	-0.13924	-7.4111E-05	-0.42255	-0.0002249	532.2475922304013	75.066	0.3922	75.076	74.934	75.326	0.010376					16	9	3	0	0	0	0.027866	1	9157	9157		24.203	0	1	131260	+		87943	25774	61180	61281	97715	97715					-0.04765903993870779
VSPALLLLG	9	Unmodified	_VSPALLLLG_					0	0	0			REV__ENSG00000136827|ENST00000351698|TOR1A	REV__ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.78790283203125	2	441.786579	881.558604	-0.30922	-0.00013661	3.3597	0.0014843	3.0505	0.0013477	441.78798563803605	43.02	2.2928	43.02	42.786	45.079	0					149	64	5	0	0	0	0.80658	2	4040	3991;4040		38.806	6.8513	1	23586000	+		87944	23686	61181	61282	97716;97717	97717					0.11308733942337312
VSPALLLLG	9	Unmodified	_VSPALLLLG_					0	0	0			REV__ENSG00000136827|ENST00000351698|TOR1A	REV__ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7880859375	2	441.786579	881.558604	-0.18492	-8.1696E-05	3.2582	0.0014394	3.0733	0.0013577	441.7879440468571	43.189	2.7104	43.049	42.846	45.557	-0.13929					162	77	5	0	0	0	0.96855	1	3997	3997		26.796	0	1	23376000	+		87945	23686	61181	61282	97718	97718					0.11308733942337312
VSPALLLLG	9	Unmodified	_VSPALLLLG_					0	0	0			REV__ENSG00000136827|ENST00000351698|TOR1A	REV__ENSG00000136827|ENST00000351698|TOR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.78778076171875	2	441.786579	881.558604	0.5436	0.00024016	2.4419	0.0010788	2.9855	0.001319	441.7875773536456	43.102	2.1581	43.133	42.939	45.097	0.030827					145	60	5	0	0	0	0.97516	1	4000	4000		25.45	0	1	24747000	+		87946	23686	61181	61282	97719	97719					0.11308733942337312
VSPEEVTI	8	Unmodified	_VSPEEVTI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210;ENST00000479519.5_1_3:13393312-13395748:-|nuORF	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	437.2738952636719	2	437.231833	872.449113	-0.15972	-6.9834E-05	2.3864	0.0010434	2.2267	0.00097359	437.2328546547827	42.561	0.68742	42.438	42.037	42.724	-0.12299					36	17	3	0	0	0	0.027866	1	3829	3829		76.847	16.553	1	468310			87947	4580	61182	61283	97720	97720					0.00778683532348623
VSPEEVTI	8	Unmodified	_VSPEEVTI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210;ENST00000479519.5_1_3:13393312-13395748:-|nuORF	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.2739562988281	2	437.231833	872.449113	-0.34087	-0.00014904	2.3414	0.0010237	2.0005	0.00087468	437.2327925359664	42.723	0.49054	42.491	42.234	42.725	-0.23186					29	12	3	0	0	0	0.027866	1	3834	3834		97.473	28.988	1	472290			87948	4580	61182	61283	97721	97721					0.00778683532348623
VSPEEVTI	8	Unmodified	_VSPEEVTI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210;ENST00000479519.5_1_3:13393312-13395748:-|nuORF	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.2734375	2	437.231833	872.449113	-0.021138	-9.2424E-06	2.0026	0.00087558	1.9814	0.00086634	437.23260650860107	42.728	0.49339	42.502	42.26	42.753	-0.22597					23	12	2	0	0	0	0.027866	1	3835	3835		85.359	25.066	1	560580			87949	4580	61182	61283	97722	97722					0.00778683532348623
VSPEGGLSVP	10	Unmodified	_VSPEGGLSVP_					0	0	0		ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.771484375	2	471.250557	940.486562	0.55264	0.00026043	-0.39576	-0.0001865	0.15688	7.3931E-05	471.2496396354342	46.568	0.28416	46.568	46.412	46.696	0					12	7	3	0	0	0	0.03519	1	4613	4613		39.253	1.4413	1	89535			87950	10345	61183	61284	97723	97723					0.013937747979639425
VSPEKNVL	8	Unmodified	_VSPEKNVL_					0	0	0		nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR	nc|ENSG00000153233|Q15256-5|PTPRR	nc|ENSG00000153233|Q15256-5|PTPRR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	443.7900085449219	2	443.255643	884.496732	-0.69421	-0.00030771	2.0215	0.00089603	1.3273	0.00058832	443.25596145772596	30.603	0.54405	30.425	30.164	30.708	-0.17818					29	12	4	0	0	0	0.027866	1	1944	1944		32.812	0	1	210520			87951	6332	61184	61285	97724	97724					0.04986382523202337
VSPFPEFIV	9	Unmodified	_VSPFPEFIV_					0	0	0			REV__PARP8|p.Y581F|1|0.19|ENSG00000151883|chr5:50821286-50821286|A/T|missense_variant	REV__PARP8|p.Y581F|1|0.19|ENSG00000151883|chr5:50821286-50821286|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7994384765625	2	517.781493	1033.54843	0.49083	0.00025414	1.2177	0.00063051	1.7085	0.00088465	517.7823820118297	104.76	0.2112	104.59	104.51	104.72	-0.16484					8	5	2	0	0	0	0.024477	1	13025	13025		27.882	14.923	1	70690	+		87952	37349	61185	61286	97725	97725					0.033001262170728296
VSPGSAQRTPW	11	Unmodified	_VSPGSAQRTPW_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	593.3064575195312	2	593.304187	1184.59382	-0.55162	-0.00032728	3.6175	0.0021463	3.0659	0.001819	593.3062538170636	63.376	1.3354	63.149	62.77	64.105	-0.2267					87	33	4	0	0	0	0.67171	3	7137	7137;7147;7160		65.465	6.6834	1	6457000			87953	8191	61186	61287	97726;97727;97728	97726					0.008907447321689688
VSPGSAQRTPW	11	Unmodified	_VSPGSAQRTPW_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	593.3064575195312	2	593.304187	1184.59382	-0.89764	-0.00053257	3.8234	0.0022685	2.9258	0.0017359	593.3063771708738	63.281	1.4528	63.097	62.671	64.124	-0.18386					98	36	4	0	0	0	0.50263	2	7144	7144;7171		76.17	21.447	1	6469700			87954	8191	61186	61287	97729;97730	97729					0.008907447321689688
VSPGSAQRTPW	11	Unmodified	_VSPGSAQRTPW_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.3057861328125	2	593.304187	1184.59382	-0.15806	-9.3775E-05	3.2738	0.0019423	3.1157	0.0018486	593.3060345541127	63.454	1.3539	63.196	62.835	64.188	-0.25824					92	34	4	0	0	0	0.849	2	7157	7143;7157		54.722	3.0554	1	6804400			87955	8191	61186	61287	97731;97732	97732					0.008907447321689688
VSPIVVVGL	9	Unmodified	_VSPIVVVGL_					0	0	0			REV__ENST00000262056.13_1_12:53434781-53434886:+|nuORF	REV__ENST00000262056.13_1_12:53434781-53434886:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7878112792969	2	441.786579	881.558604	-0.18492	-8.1696E-05	3.2582	0.0014394	3.0733	0.0013577	441.7879440468571	43.189	2.7104	43.049	42.846	45.557	-0.13929					162	77	5	0	0	0	0.90698	2	4046	4046;4059		31.955	7.7521	1	23376000	+		87956	29646	61187	61288	97733;97734	97733					0.11308733942325944
VSPIVVVGL	9	Unmodified	_VSPIVVVGL_					0	0	0			REV__ENST00000262056.13_1_12:53434781-53434886:+|nuORF	REV__ENST00000262056.13_1_12:53434781-53434886:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.787841796875	2	441.786579	881.558604	0.5436	0.00024016	2.4419	0.0010788	2.9855	0.001319	441.7875773536456	43.102	2.1581	43.133	42.939	45.097	0.030827					145	60	5	0	0	0	1.0051	1	3988	3988		19.36	0	1	24747000	+		87957	29646	61187	61288	97735	97735					0.11308733942325944
VSPKEILN	8	Unmodified	_VSPKEILN_					0	0	0		nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3;ENSG00000183576|ENST00000331768|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	nc|ENSG00000183576|Q86TU7-3|SETD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.28173828125	2	450.263468	898.512382	1.2097	0.0005447	-0.42723	-0.00019237	0.78251	0.00035234	450.2632947088391	51.381	0.35072	51.269	51.051	51.401	-0.11163					11	8	2	0	0	0	0.027866	1	5252	5252		27.882	5.9224	1	119000			87958	9244	61188	61289	97736	97736					0.059066690402460154
VSPKNGVL	8	Unmodified	_VSPKNGVL_					0	0	0		nc|ENSG00000177200|Q3L8U1-3|CHD9;nc|ENSG00000177200|Q3L8U1-2|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	nc|ENSG00000177200|Q3L8U1-3|CHD9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	406.8878173828125	2	407.245078	812.475603	0.20882	8.5042E-05	0.38476	0.00015669	0.59358	0.00024173	407.2451264005885	33.607	0.47909	33.376	33.114	33.593	-0.23107					19	11	2	0	0	0	0.027866	1	2431	2431		12.959	0	1	105570			87959	18544	61189	61290	97737	97737					0.06186417214337325
VSPKRLPL	8	Unmodified	_VSPKRLPL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4;REV__TULP4-FNDC1|1|fusion	REV__TULP4-FNDC1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	456.2629089355469	2	455.297645	908.580737	-0.13309	-6.0595E-05	0.14825	6.7499E-05	0.015164	6.9043E-06	455.2975628564398	63.54	0.608	63.348	63.109	63.717	-0.19243					37	15	3	0	0	0	0.027866	1	7219	7219		60.294	0	1	529880	+		87960	37745;23105	61190	61291	97738	97738					0.12278958410763607
VSPKRTSI	8	Unmodified	_VSPKRTSI_					0	0	0			REV__ENST00000373887.7_1_9:123688504-123688848:-|nuORF	REV__ENST00000373887.7_1_9:123688504-123688848:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	444.2686767578125	2	444.269084	886.523616	-0.55681	-0.00024738	0.43344	0.00019256	-0.12338	-5.4812E-05	444.2691582986235	28.732	0.77514	28.563	28.254	29.029	-0.16897					30	17	2	0	0	0	0.5947	1	1703	1703		76.774	7.9873	1	1086600	+		87961	31278	61191	61292	97739	97739					0.07581491134385487
VSPKRTSI	8	Unmodified	_VSPKRTSI_					0	0	0			REV__ENST00000373887.7_1_9:123688504-123688848:-|nuORF	REV__ENST00000373887.7_1_9:123688504-123688848:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	444.2687072753906	2	444.269084	886.523616	-0.23577	-0.00010475	0.087511	3.8878E-05	-0.14826	-6.5868E-05	444.2689919117459	28.743	0.67618	28.592	28.321	28.997	-0.15195					25	15	2	0	0	0	0.4075	1	1690	1690		96.19	2.184	1	1343800	+		87962	31278	61191	61292	97740	97740					0.07581491134385487
VSPLPSQPPR	10	Unmodified	_VSPLPSQPPR_					0	0	0		SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|8|1|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|8|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|6|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|38|3|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|8|1|sense	SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|8|1|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.7573852539062	2	539.306198	1076.59784	1.2272	0.00066183	2.8343	0.0015286	4.0615	0.0021904	539.306955241277	16.834	0.32136	16.68	16.485	16.806	-0.15376					8	6	2	0	0	0	0.03519	1	89	89		32.812	8.6097	1	43274			87963	37995	61192	61293	97741	97741					0.06260834225895451
VSPLRVDL	8	Unmodified	_VSPLRVDL_					0	0	0		ENST00000297303.4_1_8:11052685-11058303:-|nuORF	ENST00000297303.4_1_8:11052685-11058303:-|nuORF	ENST00000297303.4_1_8:11052685-11058303:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.7667236328125	2	449.77146	897.528367	-0.52684	-0.00023696	-0.07287	-3.2775E-05	-0.59971	-0.00026973	449.7716221132264	35.203	0.3909	35.016	34.948	35.339	-0.18675					12	9	2	0	0	0	0.027866	1	2631	2631		31.955	0	1	49322			87964	11860	61193	61294	97742	97742					0.07550375277128296
VSPPAQASSSA	11	Unmodified	_VSPPAQASSSA_					0	0	0		ENST00000366835.7_1_1:226034334-226034550:-|nuORF	ENST00000366835.7_1_1:226034334-226034550:-|nuORF	ENST00000366835.7_1_1:226034334-226034550:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2492980957031	2	501.248546	1000.48254	0.18901	9.4743E-05	-0.21402	-0.00010728	-0.025002	-1.2532E-05	501.24839527813253	104.99	0.62553	104.98	104.63	105.26	-0.0016022					49	20	3	0	0	0	1.013	1	13409	13409		33.922	3.418	1	337750			87965	12828	61194	61295	97743	97743					-0.0176831469575518
VSPPGVLF	8	Unmodified	_VSPPGVLF_					0	0	0		nc|ENSG00000184908|P51801-2|CLCNKB;ENST00000488418.2_1_1:1208367-1208592:-|nuORF	nc|ENSG00000184908|P51801-2|CLCNKB	nc|ENSG00000184908|P51801-2|CLCNKB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.1828308105469	2	408.236722	814.45889	-0.23885	-9.7508E-05	-4.1338	-0.0016876	-4.3727	-0.0017851	408.234869841683	25.266	0.34426	25.039	24.887	25.231	-0.22683					11	7	2	0	0	0	0.027866	1	1193	1193		21.702	6.0661	1	71719			87966	18587	61195	61296	97744	97744					0.044239163283691596
VSPPSGPKP	9	Unmodified	_VSPPSGPKP_					0	0	0			REV__ENST00000229633.6_1_6:126277952-126278078:+|nuORF	REV__ENST00000229633.6_1_6:126277952-126278078:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.2430114746094	2	433.242535	864.470518	0.22268	9.6476E-05	-0.15599	-6.758E-05	0.066697	2.8896E-05	433.24227992038817	46.987	1.0314	46.834	46.445	47.476	-0.15301					56	27	3	0	0	0	0.48817	1	4659	4659		60.118	1.3363	1	1305500	+		87967	29402	61196	61297	97745	97745					0.03286113351714448
VSPRRATI	8	Unmodified	_VSPRRATI_					0	0	0			REV__ENSG00000091986|ENST00000206423|CCDC80	REV__ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.2508850097656	2	450.274701	898.534849	0.22438	0.00010103	0.4444	0.0002001	0.66878	0.00030113	450.27479429832886	32.743	0.34556	32.806	32.577	32.923	0.062885					12	8	2	0	0	0	0.027866	1	2264	2264		58.782	0	1	46474	+		87968	20919	61197	61298	97746	97746					0.08152313228526964
VSPRVLVL	8	Unmodified	_VSPRVLVL_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-4|PLCH2;ENST00000473964.5_1_1:2433496-2434522:+|nuORF;nc|ENSG00000149527|O75038-5|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2658386230469	2	441.792195	881.569838	0.68829	0.00030408	-0.093077	-4.1121E-05	0.59521	0.00026296	441.7919616243623	60.047	0.40594	60.047	59.813	60.219	0					16	10	2	0	0	0	0.027866	1	6910	6910		23.042	6.5693	1	156560			87969	12537	61198	61299	97747	97747					0.12431556036472102
VSPSSAKVIFV	11	Unmodified	_VSPSSAKVIFV_					0	0	0		ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.3298950195312	2	567.331882	1132.64921	-0.39327	-0.00022312	-3.492	-0.0019811	-3.8853	-0.0022042	567.3298148944838	91.059	3.9482	90.936	89.504	93.452	-0.12341					378	93	6	0	0	0	1.0075	1	11103	11103		35.152	4.8343	1	19210000			87970	13300	61199	61300	97748	97748					0.08819158199935373
VSPTSILE	8	Unmodified	_VSPTSILE_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.5472412109375	2	423.234376	844.454199	-0.41814	-0.00017697	1.9987	0.00084591	1.5805	0.00066894	423.23529356214163	29.789	0.59373	29.544	29.142	29.736	-0.24524					15	13	2	0	0	0	0.027866	1	1800	1800		17.365	13.681	1	379080	+		87971	27967	61200	61301	97749	97749					0.02574987394962136
VSPVRKTTKIH	11	Unmodified	_VSPVRKTTKIH_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20;nc|nan|Q8ND61-2|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	422.5935974121094	3	422.594461	1264.76155	0.31209	0.00013189	-4.1962	-0.0017733	-3.8841	-0.0016414	422.59259397297745	49.759	3.148	49.654	48.913	52.061	-0.10558					256	83	5	0	0	0	1.0281	1	5125	5125		30.569	11.306	1	11811000			87972	4516	61201	61302	97750	97750					0.13976431996798055
VSQEHGRLN	9	Unmodified	_VSQEHGRLN_					0	0	0		ENST00000415142.1_2_2:99771951-99772854:+|nuORF	ENST00000415142.1_2_2:99771951-99772854:+|nuORF	ENST00000415142.1_2_2:99771951-99772854:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.7756958007812	2	520.267604	1038.52066	-0.038208	-1.9878E-05	2.7051	0.0014074	2.6669	0.0013875	520.2688033385149	75.355	0.90073	75.096	74.695	75.596	-0.25866					58	21	4	0	0	0	0.024457	1	8983	8983		37.159	11.709	1	2954500			87973	13870	61202	61303	97751	97751					0.002936160095714513
VSQIKRLN	8	Unmodified	_VSQIKRLN_					0	0	0			REV__ARHGAP36|p.A462V|1|0.36|ENSG00000147256|chrX:131086564-131086564|C/T|missense_variant	REV__ARHGAP36|p.A462V|1|0.36|ENSG00000147256|chrX:131086564-131086564|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.29534912109375	2	479.295633	956.576714	0.30053	0.00014404	-0.44052	-0.00021114	-0.13999	-6.7097E-05	479.29531281550055	24.41	0.85894	24.195	23.733	24.592	-0.2151					52	19	4	0	0	0	0.81662	1	1056	1056		57.811	0	1	2213900	+		87974	19164	61203	61304	97752	97752					0.0966886891702643
VSQKRSLV	8	Unmodified	_VSQKRSLV_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	458.7823791503906	2	458.782359	915.550165	-0.51937	-0.00023828	0.12099	5.551E-05	-0.39837	-0.00018277	458.7824016470786	21.941	1.0939	21.739	21.421	22.515	-0.20199					56	22	4	0	0	0	0.50717	1	690	690		84.916	2.6105	1	1801000	+		87975	20986	61204	61305	97753	97753					0.08901180025702615
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.7561950683594	2	457.756341	913.498129	-0.32905	-0.00015063	0.47388	0.00021692	0.14482	6.6293E-05	457.7564299550593	31.349	0.82272	31.349	31.047	31.869	0					53	19	4	0	0	0	0.15388	2	2076	2076;2091		98.582	22.412	1	2029100	+		87976	30261	61205	61306	97754;97755	97754					0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.75616455078125	2	457.756341	913.498129	-0.14051	-6.4317E-05	0.26284	0.00012032	0.12233	5.5998E-05	457.75635341614134	31.266	1.517	31.278	30.627	32.144	0.011797					55	36	2	0	0	0	0.15388	2	2060	2051;2060		98.582	20.318	1	2073100	+		87977	30261	61205	61306	97756;97757	97757					0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.75628662109375	2	457.756341	913.498129	0.052096	2.3847E-05	-0.13319	-6.0971E-05	-0.081099	-3.7123E-05	457.7561181227457	30.992	0.98184	31.061	30.744	31.726	0.068962					60	23	4	0	0	0	0.087669	2	1992	1981;1992		114.89	29.535	1	2072200	+		87978	30261	61205	61306	97758;97759	97759					0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	457.756341	913.498129	-0.32905	-0.00015063	0.47388	0.00021692	0.14482	6.6293E-05	457.7564299550593	31.349	0.82272	31.349	31.047	31.869	0	0.11971	0.00024767	NaN	114.89	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2029100	+		87979	30261	61205	61306							0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	457.756341	913.498129	-0.14051	-6.4317E-05	0.26284	0.00012032	0.12233	5.5998E-05	457.75635341614134	31.266	1.517	31.278	30.627	32.144	0.011797	0.048668	5.446E-05	NaN	114.89	55	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2073100	+		87980	30261	61205	61306							0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	457.756341	913.498129	0.052096	2.3847E-05	-0.13319	-6.0971E-05	-0.081099	-3.7123E-05	457.7561181227457	30.992	0.98184	31.061	30.744	31.726	0.068962	-0.16837	-0.00030811	NaN	114.89	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2072200	+		87981	30261	61205	61306							0.03792016611953386
VSQRKYSL	8	Unmodified	_VSQRKYSL_					0	0	0		ENST00000541550.5_1_10:75936554-75960560:+|nuORF	ENST00000541550.5_1_10:75936554-75960560:+|nuORF	ENST00000541550.5_1_10:75936554-75960560:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	490.7795104980469	2	490.779816	979.545079	-0.27826	-0.00013657	-0.16598	-8.1461E-05	-0.44425	-0.00021803	490.7796957959635	27.007	1.3361	26.85	26.388	27.724	-0.15664					90	31	5	0	0	0	0.93274	1	1450	1450		47.916	0	1	3339300			87982	16439	61206	61307	97760	97760					0.054488761630864246
VSQVKVGIN	9	Unmodified	_VSQVKVGIN_					0	0	0		ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENST00000471834.1_1_6:152657861-152688565:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.28204345703125	2	472.282192	942.549831	0.2434	0.00011496	-0.5646	-0.00026665	-0.32119	-0.00015169	472.28178001114645	47.491	0.91115	47.222	46.908	47.819	-0.26939					68	24	4	0	0	0	0.30449	2	4631	4631;4655		75.043	7.119	1	3843100			87983	14972	61207	61308	97761;97762	97761					0.07625760305847962
VSQVKVGIN	9	Unmodified	_VSQVKVGIN_					0	0	0		ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENST00000471834.1_1_6:152657861-152688565:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2821044921875	2	472.282192	942.549831	-0.26002	-0.0001228	-0.08738	-4.1268E-05	-0.3474	-0.00016407	472.28201070893914	47.346	0.8566	47.152	46.886	47.742	-0.19387					59	22	4	0	0	0	0.16468	2	4625	4614;4625		96.19	8.4361	1	3258700			87984	14972	61207	61308	97763;97764	97764					0.07625760305847962
VSQWLAKSNS	10	Unmodified	_VSQWLAKSNS_					0	0	0		ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.271240234375	2	560.293288	1118.57202	-0.48863	-0.00027378	2.5697	0.0014398	2.081	0.001166	560.2946571992741	27.896	0.60786	27.745	27.353	27.961	-0.15195					23	14	2	0	0	0	0.03519	1	1518	1518		35.152	4.6484	1	140360			87985	13624	61208	61309	97765	97765					0.017479399836247467
VSQWLAKSNS	10	Unmodified	_VSQWLAKSNS_					0	0	0		ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	560.293288	1118.57202	-0.37355	-0.0002093	2.6563	0.0014883	2.2828	0.001279	560.2945721755282	27.944	0.71779	27.699	27.203	27.921	-0.24524	0.026773	-0.00032323	NaN	35.152	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123960			87986	13624	61208	61309							0.017479399836247467
VSQWLAKSNS	10	Unmodified	_VSQWLAKSNS_					0	0	0		ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	560.293288	1118.57202	-0.79119	-0.0004433	3.3656	0.0018857	2.5744	0.0014424	560.2950301993001	27.74	0.78787	27.572	27.099	27.887	-0.16816	-0.09949	0.00047159	NaN	35.152	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132030			87987	13624	61208	61309							0.017479399836247467
VSRAGPSGV	9	Unmodified	_VSRAGPSGV_					0	0	0			REV__ENST00000572652.5_1_17:78194749-78195028:+|nuORF	REV__ENST00000572652.5_1_17:78194749-78195028:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	415.23016357421875	2	415.229959	828.445365	-0.70861	-0.00029424	1.3092	0.00054363	0.60062	0.00024939	415.2304536137576	26.789	1.0297	26.87	26.29	27.319	0.081293					54	25	3	0	0	0	0.18915	1	1350	1350		90.777	5.4172	1	2418300	+		87988	35426	61209	61310	97766	97766					0.024280585491396778
VSRAGSLLW	9	Unmodified	_VSRAGSLLW_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7828063964844	2	494.782359	987.550165	-0.66679	-0.00032991	0.88501	0.00043789	0.21822	0.00010797	494.7826504805421	57.873	0.86562	57.695	57.281	58.147	-0.17775					45	21	3	0	0	0	0.10464	3	6343	6343;6353;6362		109.48	27.173	1	4669800			87989	2158	61210	61311	97767;97768;97769	97767					0.05589180025708629
VSRAGSLLW	9	Unmodified	_VSRAGSLLW_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.7827453613281	2	494.782359	987.550165	0.051358	2.5411E-05	-0.18487	-9.1472E-05	-0.13352	-6.6061E-05	494.7822549434837	57.883	0.9085	57.693	57.148	58.056	-0.19018					38	23	2	0	0	0	0.086035	2	6346	6346;6351		115.49	38.176	1	6473900			87990	2158	61210	61311	97770;97771	97770					0.05589180025708629
VSRAGSLLW	9	Unmodified	_VSRAGSLLW_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;SUN2|p.R472Pfs*70|1|0.19|ENSG00000100242|chr22:38739887-38739888|-/C|frameshift_variant;SUN2|p.Y236Mfs*88|1|0.39|ENSG00000100242|chr22:38745792-38745792|G/-|frameshift_variant	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7818908691406	2	494.782359	987.550165	-0.25589	-0.00012661	0.28241	0.00013973	0.026513	1.3118E-05	494.7824374174707	57.928	0.94397	57.694	57.237	58.181	-0.23363					49	23	3	0	0	0	0.18994	2	6346	6346;6364		90.601	10.146	1	4247500			87991	2158	61210	61311	97772;97773	97772					0.05589180025708629
VSRDRKVKGKL	11	Unmodified	_VSRDRKVKGKL_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	643.4049072265625	2	643.406778	1284.799	-0.39062	-0.00025132	-0.084658	-5.447E-05	-0.47527	-0.00030579	643.4067111550588	104.34	0.57573	104.21	104.02	104.6	-0.12927					54	17	4	0	0	0	1.0292	1	13011	13011		30.318	1.1477	1	2017700	+		87992	27830	61211	61312	97774	97774					0.16799523262420735
VSREDFEW	8	Unmodified	_VSREDFEW_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.2431640625	2	534.243264	1066.47197	-0.62729	-0.00033513	1.2386	0.00066172	0.61131	0.00032659	534.243492822023	56.332	0.89937	56.175	55.748	56.648	-0.15655					35	22	3	0	0	0	0.67154	1	6095	6095		69.628	2.134	1	4868700			87993	5683	61212	61313	97775	97775					-0.05860297350182009
VSREDFEW	8	Unmodified	_VSREDFEW_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.2432861328125	2	534.243264	1066.47197	-0.22359	-0.00011945	0.58413	0.00031207	0.36054	0.00019262	534.243299838766	56.37	1.06	56.154	55.598	56.658	-0.21607					46	27	3	0	0	0	0.44952	2	6094	6094;6106		90.37	16.115	1	5677700			87994	5683	61212	61313	97776;97777	97776					-0.05860297350182009
VSREDFEW	8	Unmodified	_VSREDFEW_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2435913085938	2	534.243264	1066.47197	-0.80029	-0.00042755	1.047	0.00055935	0.24671	0.0001318	534.2435203956076	56.371	0.85045	56.146	55.771	56.621	-0.2248					39	21	3	0	0	0	0.47727	1	6094	6094		87.696	18.069	1	5077100			87995	5683	61212	61313	97778	97778					-0.05860297350182009
VSRFLLPSI	9	Unmodified	_VSRFLLPSI_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.760986328125	2	516.316035	1030.61752	0.82164	0.00042422	0.98211	0.00050708	1.8038	0.00093131	516.8182332480072	71.228	0.93095	70.939	70.459	71.39	-0.28857					30	22	2	0	0	0	0.024438	1	8555	8555		36.447	6.6052	1	303960			87996	10106	61213	61314	97779	97779					0.10343210236646883
VSRGLDSGG	9	Unmodified	_VSRGLDSGG_					0	0	0		ENST00000463007.5_1_2:240011659-240219867:-|nuORF	ENST00000463007.5_1_2:240011659-240219867:-|nuORF	ENST00000463007.5_1_2:240011659-240219867:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	424.2185974121094	2	424.217049	846.419545	-0.22547	-9.5648E-05	3.6889	0.0015649	3.4634	0.0014692	424.2185251046166	98.415	2.1934	98.415	97.594	99.787	0					127	50	5	0	0	0	0.6504	1	12615	12615		49.442	10.635	1	7415800			87997	14726	61214	61315	97780	97780					-0.009808356931443996
VSRHLRKQ	8	Unmodified	_VSRHLRKQ_					0	0	0			REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	REV__nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.279541015625	2	512.312149	1022.60975	2.6129	0.0013386	-0.76099	-0.00038986	1.8519	0.00094877	512.8153608805902	19.253	0.2463	19.319	19.143	19.389	0.066193					6	4	2	0	0	0	0.027866	1	352	352		15.642	0	1	13461	+		87998	21089	61215	61316	97781	97781					0.09934495759750916
VSRHPFPGP	9	Unmodified	_VSRHPFPGP_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.26837158203125	2	497.266876	992.519199	-0.39739	-0.00019761	2.9734	0.0014786	2.576	0.001281	497.26831478291894	35.326	1.0994	35.326	34.629	35.728	0					103	28	5	0	0	0	0.59099	1	2700	2700		53.351	1.0523	1	13547000			87999	7126	61216	61317	97782	97782					0.022640267114638846
VSRHPFPGP	9	Unmodified	_VSRHPFPGP_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.26849365234375	2	497.266876	992.519199	-0.50113	-0.0002492	3.212	0.0015972	2.7108	0.001348	497.26841631396877	36.088	1.7988	36.088	35.687	37.486	0					141	48	4	0	0	0	0.52323	2	2831	2771;2831		57.811	6.4758	1	12749000			88000	7126	61216	61317	97783;97784	97784					0.022640267114638846
VSRILAPV	8	Unmodified	_VSRILAPV_					0	0	0		nc|ENSG00000054392|Q5VTY9-4|HHAT	nc|ENSG00000054392|Q5VTY9-4|HHAT	nc|ENSG00000054392|Q5VTY9-4|HHAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.758544921875	2	427.776545	853.538538	0.27717	0.00011857	-2.594	-0.0011097	-2.3168	-0.00099109	427.77558469682924	41.226	0.20957	41.103	40.98	41.189	-0.12317					7	5	2	0	0	0	0.027866	1	3674	3674		63.306	24.5	1	67228			88001	18048	61217	61318	97785	97785					0.10590983002373378
VSRILQEAW	9	Unmodified	_VSRILQEAW_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.3059692382812	2	551.306198	1100.59784	-0.28773	-0.00015863	0.11483	6.3305E-05	-0.1729	-9.5323E-05	551.3061705064251	58.7	0.6743	58.512	58.223	58.898	-0.18795					37	16	3	0	0	0	0.35556	1	6458	6458		68.846	14.07	1	2165200			88002	3418	61218	61319	97786	97786					0.051568342258860866
VSRILQEAW	9	Unmodified	_VSRILQEAW_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.3062744140625	2	551.306198	1100.59784	0.075972	4.1884E-05	-0.10338	-5.6993E-05	-0.027405	-1.5109E-05	551.306096275105	58.577	0.60357	58.395	58.187	58.791	-0.18134					35	14	3	0	0	0	0.10482	1	6448	6448		109.44	29.988	1	2440700			88003	3418	61218	61319	97787	97787					0.051568342258860866
VSRILQEAW	9	Unmodified	_VSRILQEAW_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	551.3059692382812	2	551.306198	1100.59784	0.56612	0.0003121	-0.73095	-0.00040298	-0.16483	-9.0873E-05	551.305747937959	58.723	0.67902	58.481	58.216	58.895	-0.24165					39	16	3	0	0	0	0.38419	1	6453	6453		66.962	17.52	1	2383100			88004	3418	61218	61319	97788	97788					0.051568342258860866
VSRIVKPQP	9	Unmodified	_VSRIVKPQP_					0	0	0		ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	ENSG00000198908|ENST00000457056|GPRASP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.3023681640625	2	512.319109	1022.62366	0.91303	0.00046776	-1.259	-0.000645	-0.34595	-0.00017724	512.3183044194826	51.552	0.8341	51.368	50.981	51.815	-0.18404					45	21	3	0	0	0	0.024541	1	5299	5299		16.473	4.9621	1	621120			88005	10243	61219	61320	97789	97789					0.11325728468182206
VSRKAAAVEV	10	Unmodified	_VSRKAAAVEV_					0	0	0		ENST00000590564.5_1_19:30787074-30787137:+|nuORF	ENST00000590564.5_1_19:30787074-30787137:+|nuORF	ENST00000590564.5_1_19:30787074-30787137:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.760986328125	2	515.306198	1028.59784	0.88096	0.00045397	1.8334	0.00094476	2.7144	0.0013987	515.3071784352211	71.139	0.56402	70.849	70.588	71.152	-0.29005					32	13	3	0	0	0	0.03519	1	8555	8555		35.152	0	1	897550			88006	17337	61220	61321	97790	97790					0.08468834225868704
VSRLKVIV	8	Unmodified	_VSRLKVIV_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000168356|Q9UI33-2|SCN11A;SCN11A|p.G1757Rfs*2|1|0.55|ENSG00000168356|chr3:38846801-38846802|-/T|frameshift_variant	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	457.3128356933594	2	457.313295	912.612037	-0.59237	-0.0002709	-0.099151	-4.5343E-05	-0.69152	-0.00031624	457.3131968046075	44.332	2.3209	44.332	44.022	46.343	0					141	67	5	0	0	0	0.6536	1	4219	4219		71.296	2.811	1	17509000			88007	7814	61221	61322	97791	97791					0.1522353144484896
VSRLSQTW	8	Unmodified	_VSRLSQTW_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5;ENST00000468825.1_1_7:22179621-22184834:-|nuORF	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7637023925781	2	488.764166	975.513779	-0.38207	-0.00018674	0.1693	8.2749E-05	-0.21277	-0.00010399	488.76419138720587	43.092	0.72823	42.979	42.735	43.463	-0.11253					49	19	4	0	0	0	0.10914	2	3929	3929;3943		158.07	55.301	1	4351400			88008	4997	61222	61323	97792;97793	97792					0.025043031289897044
VSRLSQTW	8	Unmodified	_VSRLSQTW_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5;ENST00000468825.1_1_7:22179621-22184834:-|nuORF	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.76409912109375	2	488.764166	975.513779	-0.30302	-0.0001481	0.0075738	3.7018E-06	-0.29544	-0.0001444	488.764133281377	43.257	0.84105	43.019	42.759	43.6	-0.23737					50	22	4	0	0	0	0.078056	3	3942	3925;3942;3954		166.68	46.058	1	4227600			88009	4997	61222	61323	97794;97795;97796	97795					0.025043031289897044
VSRLSQTW	8	Unmodified	_VSRLSQTW_					0	0	0		nc|ENSG00000136237|Q92565-2|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;ENSG00000136237|ENST00000665637|RAPGEF5;ENST00000468825.1_1_7:22179621-22184834:-|nuORF	nc|ENSG00000136237|Q92565-2|RAPGEF5	nc|ENSG00000136237|Q92565-2|RAPGEF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7640686035156	2	488.764166	975.513779	-0.51469	-0.00025156	0.16945	8.2823E-05	-0.34524	-0.00016874	488.76416426225035	43.272	1.1727	43.046	42.793	43.965	-0.22597					59	31	4	0	0	0	0.10914	3	3935	3935;3946;3960		158.07	37.454	1	4164000			88010	4997	61222	61323	97797;97798;97799	97797					0.025043031289897044
VSRMKKAV	8	Unmodified	_VSRMKKAV_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	458.7823791503906	2	459.781305	917.548056	-0.84684	-0.00038936	-2.691	-0.0012373	-3.5379	-0.0016267	459.7797481940519	21.728	0.33852	21.516	21.363	21.701	-0.2128					11	6	2	0	0	0	0.027866	1	690	690		64.207	16.292	1	42151			88011	769	61223	61324	97800	97800					0.08598428016239268
VSRPDESRMIA	11	Unmodified	_VSRPDESRMIA_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.8819274902344	3	420.883683	1259.62922	-0.61859	-0.00026035	-2.1419	-0.00090148	-2.7605	-0.0011618	420.88273777482607	35.878	0.85552	35.673	35.387	36.242	-0.20518					56	23	3	0	0	0	0.92638	1	2767	2767		50.034	7.6954	1	2276500	+		88012	28927	61224	61325	97801	97801					0.009790391977048785
VSRPDESRMIA	11	Unmodified	_VSRPDESRMIA_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.8825378417969	3	420.883683	1259.62922	0.36909	0.00015535	-2.8587	-0.0012032	-2.4896	-0.0010478	420.88241128563686	35.715	0.88379	35.517	35.209	36.093	-0.19829					54	24	3	0	0	0	0.98625	1	2719	2719		39.873	11.296	1	2037100	+		88013	28927	61224	61325	97802	97802					0.009790391977048785
VSRPDESRMIA	11	Unmodified	_VSRPDESRMIA_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	420.883683	1259.62922	-0.61859	-0.00026035	-2.1419	-0.00090148	-2.7605	-0.0011618	420.88273777482607	35.878	0.85552	35.673	35.387	36.242	-0.20518	0.066673	0.00050037	NaN	50.034	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2276500	+		88014	28927	61224	61325							0.009790391977048785
VSRPDESRMIA	11	Unmodified	_VSRPDESRMIA_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	420.883683	1259.62922	0.006771	2.8498E-06	-2.6226	-0.0011038	-2.6158	-0.001101	420.88247060198427	35.842	0.85474	35.629	35.354	36.209	-0.21246	0.023044	-0.00010663	NaN	50.034	70	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1859300	+		88015	28927	61224	61325							0.009790391977048785
VSRPPLLLV	9	Unmodified	_VSRPPLLLV_					0	0	0			REV__ENST00000526508.5_1_11:46695513-46695603:+|nuORF	REV__ENST00000526508.5_1_11:46695513-46695603:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.29541015625	2	497.326402	992.638252	0.28331	0.0001409	-4.3804	-0.0021785	-4.0971	-0.0020376	497.323964203108	41.226	0.21235	41.103	40.943	41.155	-0.12317					7	5	2	0	0	0	0.024447	1	3655	3655		32.812	2.3088	1	106270	+		88016	34447	61225	61326	97803	97803					0.14163800616324806
VSRRAFAGL	9	Unmodified	_VSRRAFAGL_					0	0	0		ENSG00000220008|ENST00000698372|LINGO3	ENSG00000220008|ENST00000698372|LINGO3	ENSG00000220008|ENST00000698372|LINGO3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.75592041015625	2	488.787976	975.561398	-0.34858	-0.00017038	0.020117	9.8328E-06	-0.32846	-0.00016055	488.78723778153756	20.052	0.3832	19.947	19.745	20.129	-0.10477					16	7	3	0	0	0	0.024457	1	479	479		29.15	0	1	37683			88017	10606	61226	61327	97804	97804					0.07264002119836732
VSRSEIDLF	9	Unmodified	_VSRSEIDLF_					0	0	0		ENST00000515717.1_1_4:122590675-122593697:-|nuORF;ENST00000506395.5_1_4:122589625-122599515:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5	ENST00000515717.1_1_4:122590675-122593697:-|nuORF	ENST00000515717.1_1_4:122590675-122593697:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2838134765625	2	533.282389	1064.55022	5.203	0.0027746	-0.61377	-0.00032731	4.5892	0.0024473	533.2818758864512	16.878	0.69662	16.625	16.48	17.176	-0.25378					42	17	4	0	0	0	0.99229	1	110	110		21.96	1.9631	1	355120			88018	7214	61227	61328	97805	97805					0.02053135235018999
VSRSPPPK	8	Unmodified	_VSRSPPPK_					0	0	0		ENST00000359297.6_1_1:36805948-36806095:-|nuORF	ENST00000359297.6_1_1:36805948-36806095:-|nuORF	ENST00000359297.6_1_1:36805948-36806095:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.25518798828125	2	434.255977	866.497401	0.035599	1.5459E-05	-3.1561	-0.0013705	-3.1205	-0.0013551	434.2549440883531	102.94	0.79778	102.81	102.41	103.21	-0.12783					60	18	4	0	0	0	0.027866	1	12773	12773		21.96	0	1	38978000			88019	12733	61228	61329	97806	97806					0.05881221962897598
VSRTPEQVT	9	Unmodified	_VSRTPEQVT_					0	0	0		ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	ENSG00000118322|ENST00000327245|ATP10B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.80145263671875	2	508.772188	1015.52982	-1.1177	-0.00056864	-1.3577	-0.00069078	-2.4754	-0.0012594	509.2730151780161	55.161	0.29887	55.259	55.148	55.447	0.098015					13	7	2	0	0	0	0.024367	1	6004	6004		36.447	0	1	185770			88020	3678	61229	61330	97807	97807					0.022679645752418764
VSRTSRRA	8	Unmodified	_VSRTSRRA_					0	0	0		ENST00000306077.4_1_3:14166440-14166650:+|nuORF	ENST00000306077.4_1_3:14166440-14166650:+|nuORF	ENST00000306077.4_1_3:14166440-14166650:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2635192871094	2	466.772857	931.531161	-0.19543	-9.1224E-05	4.415	0.0020608	4.2196	0.0019696	466.7749965614014	37.898	0.1449	37.718	37.665	37.809	-0.17929					5	3	2	0	0	0	0.027866	1	3076	3076		21.96	1.013	1	264700			88021	11996	61230	61331	97808	97808					0.06265643454662495
VSRVRPPHL	9	Unmodified	_VSRVRPPHL_					0	0	0		ENST00000592905.5_1_19:45918043-45926632:-|nuORF	ENST00000592905.5_1_19:45918043-45926632:-|nuORF	ENST00000592905.5_1_19:45918043-45926632:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.7744140625	2	530.82235	1059.63015	-0.257	-0.00013642	-3.4527	-0.0018328	-3.7097	-0.0019692	530.8203647198839	57.371	0.43196	57.169	56.926	57.358	-0.20208					19	11	2	0	0	0	0.024495	1	6232	6232		42.396	15.6	1	188430			88022	17384	61231	61332	97809	97809					0.10271666419566827
VSSALRLLA	9	Unmodified	_VSSALRLLA_					0	0	0			REV__ENSG00000215148|ENST00000399677|PRSS41	REV__ENSG00000215148|ENST00000399677|PRSS41	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.25341796875	2	465.292559	928.570566	-0.2314	-0.00010767	-0.53158	-0.00024734	-0.76298	-0.00035501	465.2921841595964	39.906	0.38007	39.756	39.553	39.933	-0.1497					15	9	2	0	0	0	0.024262	1	3439	3439		47.916	0	1	201970	+		88023	28800	61232	61333	97810	97810					0.10342350685505153
VSSDQDQRQW	10	Unmodified	_VSSDQDQRQW_					0	0	0		ENSG00000167693|ENST00000336868|NXN	ENSG00000167693|ENST00000336868|NXN	ENSG00000167693|ENST00000336868|NXN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.8916015625	3	416.858302	1247.55308	-0.76274	-0.00031795	0.65285	0.00027215	-0.10989	-4.5808E-05	416.85983353919266	33.525	0.36273	33.36	33.077	33.44	-0.16565					17	8	3	0	0	0	0.03519	1	2385	2385		77.533	10.613	1	39761			88024	7723	61233	61334	97811	97811					-0.06079641378096312
VSSERAPGVP	10	Unmodified	_VSSERAPGVP_					0	0	0		ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	ENSG00000167895|ENST00000318430|TMC8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	499.7664489746094	2	499.766906	997.519259	-0.051563	-2.577E-05	-0.87383	-0.00043671	-0.92539	-0.00046248	499.76634597347083	36.535	1.1256	36.535	35.994	37.12	0					84	30	6	0	0	0	0.85955	1	2935	2935		56.721	5.5284	1	7121200			88025	7748	61234	61335	97812	97812					0.020399819208023473
VSSFPTTSG	9	Unmodified	_VSSFPTTSG_					0	0	0			REV__ENST00000347486.8_1_17:26989243-26989330:+|nuORF	REV__ENST00000347486.8_1_17:26989243-26989330:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	441.7147521972656	2	441.713808	881.413062	-0.088996	-3.9311E-05	2.4219	0.0010698	2.3329	0.0010305	441.71451035524495	31.353	2.4158	31.365	29.884	32.299	0.011797					188	58	5	0	0	0	0.87448	1	2072	2072		34.173	0	1	2374600	+		88026	30707	61235	61336	97813	97813					-0.032387736445230075
VSSFPTTSG	9	Unmodified	_VSSFPTTSG_					0	0	0			REV__ENST00000347486.8_1_17:26989243-26989330:+|nuORF	REV__ENST00000347486.8_1_17:26989243-26989330:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	441.7144470214844	2	441.713808	881.413062	-0.143	-6.3167E-05	2.3066	0.0010189	2.1636	0.00095568	441.7145119181069	31.128	2.6513	31.197	29.518	32.169	0.06896					212	64	6	0	0	0	0.75397	1	1976	1976		42.396	5.237	1	2819600	+		88027	30707	61235	61336	97814	97814					-0.032387736445230075
VSSILPLVET	10	Unmodified	_VSSILPLVET_					0	0	0			REV__ENSG00000139218|ENST00000369367|SCAF11	REV__ENSG00000139218|ENST00000369367|SCAF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.318115234375	2	529.310615	1056.60668	-0.89284	-0.00047259	-2.0522	-0.0010862	-2.945	-0.0015588	529.3094194528162	39.302	0.4984	39.326	39.063	39.562	0.023727					34	13	3	0	0	0	0.03519	1	3338	3338		26.693	11.051	1	1041800	+		88028	23928	61236	61337	97815	97815					0.08063763071709218
VSSKCLSVL	9	Unmodified	_VSSKCLSVL_					0	0	0		ULK4|p.I1182V|1|0.2|ENSG00000168038|chr3:41398213-41398213|T/C|missense_variant	ULK4|p.I1182V|1|0.2|ENSG00000168038|chr3:41398213-41398213|T/C|missense_variant	ULK4|p.I1182V|1|0.2|ENSG00000168038|chr3:41398213-41398213|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	468.26318359375	2	468.265153	934.515753	-0.65233	-0.00030546	-3.569	-0.0016712	-4.2213	-0.0019767	468.26334265396395	43.685	0.81184	43.448	43.099	43.911	-0.23737					49	21	3	0	0	0	0.56934	1	4007	4007		54.776	1.4249	1	5523700			88029	38126	61237	61338	97816	97816					0.0458759582257926
VSSKCSKT	8	Unmodified	_VSSKCSKT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	420.2403259277344	2	420.218203	838.421853	0.43058	0.00018094	1.4202	0.0005968	1.8508	0.00077774	420.21875909335614	37.148	0.2977	37.085	36.866	37.163	-0.063385					12	7	2	0	0	0	0.027866	1	3001	3001		15.642	0.0055962	1	45875			88030	6479	61238	61339	97817	97817					-0.0038212327970086335
VSSLHLLH	8	Unmodified	_VSSLHLLH_					0	0	0			REV__ENST00000361365.6_1_Y:22737659-22737698:+|nuORF	REV__ENST00000361365.6_1_Y:22737659-22737698:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	453.30010986328125	2	453.263802	904.513051	-0.76702	-0.00034766	0.70331	0.00031878	-0.063715	-2.888E-05	453.26396644439205	28.064	0.44085	27.895	27.649	28.089	-0.16897					17	10	2	0	0	0	0.027866	1	1572	1572		19.36	6.4008	1	179330	+		88031	30940	61239	61340	97818	97818					0.05697508479943281
VSSLHSLASL	10	Unmodified	_VSSLHSLASL_					0	0	0			REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7358093261719	2	507.284931	1012.55531	-0.38793	-0.00019679	0.53451	0.00027115	0.14658	7.436E-05	507.2850795216555	39.926	0.5034	39.701	39.501	40.004	-0.225					33	12	4	0	0	0	0.03519	1	3400	3400		31.53	7.3271	1	459690	+		88032	34083	61240	61341	97819	97819					0.04953439097653245
VSSLHSLASL	10	Unmodified	_VSSLHSLASL_					0	0	0			REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	REV__ENST00000509394.6_1_4:20544172-20554168:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7360534667969	2	507.284931	1012.55531	-0.47999	-0.00024349	0.43053	0.0002184	-0.049457	-2.5089E-05	507.28497365915337	39.914	0.50094	39.684	39.429	39.93	-0.23021					28	12	3	0	0	0	0.03519	1	3412	3412		31.53	3.6476	1	420760	+		88033	34083	61240	61341	97820	97820					0.04953439097653245
VSSLMIVPV	9	Unmodified	_VSSLMIVPV_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.7769775390625	2	472.777896	943.54124	0.29213	0.00013811	-3.432	-0.0016226	-3.1399	-0.0014845	472.7760702488584	79.302	2.2495	79.321	78.441	80.691	0.018677					107	53	3	0	0	0	0.64155	1	9817	9817		50.025	8.5979	1	1137800	+		88034	22881	61241	61342	97821	97821					0.06721070345031421
VSSLPKQI	8	Unmodified	_VSSLPKQI_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	435.75579833984375	2	436.26601	870.517468	1.718	0.00074949	-1.9524	-0.00085176	-0.23441	-0.00010227	436.2649706177298	63.998	0.57482	63.998	63.736	64.311	0					37	15	3	0	0	0	0.027866	1	7472	7472		33.516	0	1	1063900	+		88035	23827	61242	61343	97822	97822					0.07702972902859528
VSSLSYVQ	8	Unmodified	_VSSLSYVQ_					0	0	0			REV__ENST00000515007.6_1_5:77784952-77805630:-|nuORF	REV__ENST00000515007.6_1_5:77784952-77805630:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	441.78802490234375	2	441.732	881.449448	-0.30196	-0.00013339	2.5403	0.0011221	2.2384	0.00098875	441.7331801813039	40.974	1.1442	40.746	40.329	41.474	-0.2278					75	29	4	0	0	0	0.027866	1	3627	3627		30.504	0	1	3222900	+		88036	34187	61243	61344	97823	97823					0.003981032521892303
VSSMLESPI	9	Unmodified	_VSSMLESPI_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.7574157714844	2	481.746793	961.479033	-0.42394	-0.00020423	-0.55877	-0.00026919	-0.98271	-0.00047342	481.74599503481767	52.625	0.39135	52.366	52.173	52.564	-0.25838					16	9	2	0	0	0	0.022924	1	5485	5485		85.359	3.0545	1	116150			88037	9617	61244	61345	97824	97824					-0.003247007939762625
VSSMLESPI	9	Unmodified	_VSSMLESPI_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.746793	961.479033	-0.27553	-0.00013274	-1.294	-0.0006234	-1.5696	-0.00075614	481.7457661316536	52.403	0.35209	52.284	52.048	52.4	-0.11875	-0.0038372	0.00021193	NaN	85.359	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121820			88038	9617	61244	61345							-0.003247007939762625
VSSMLESPI	9	Unmodified	_VSSMLESPI_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.746793	961.479033	0.06474	3.1188E-05	-2.04	-0.00098275	-1.9752	-0.00095156	481.7456347735229	52.397	0.3602	52.213	52.035	52.395	-0.18404	-0.074608	-0.00050677	NaN	85.359	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134520			88039	9617	61244	61345							-0.003247007939762625
VSSNAECPACY	11	Unmodified	_VSSNAECPACY_					0	0	0		ENSG00000259823|ENST00000590317|LYPD8	ENSG00000259823|ENST00000590317|LYPD8	ENSG00000259823|ENST00000590317|LYPD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.2259521484375	2	572.225899	1142.43724	0.31591	0.00018077	0.15822	9.0537E-05	0.47413	0.00027131	572.2257479252539	50.921	0.70752	50.644	50.37	51.078	-0.27643					40	18	3	0	0	0	0.9728	1	5203	5203		42.864	10.052	1	1941500			88040	10937	61245	61346	97825	97825					-0.12827624544820537
VSSNHACN	8	Unmodified	_VSSNHACN_					0	0	0			REV__ADAT1|p.W165C|1|0.3|ENSG00000065457|chr16:75612791-75612791|C/A|missense_variant	REV__ADAT1|p.W165C|1|0.3|ENSG00000065457|chr16:75612791-75612791|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.56378173828125	2	416.174327	830.3341	-0.40681	-0.00016931	-3.5106	-0.001461	-3.9174	-0.0016303	416.1729461894834	45.6	0.33973	45.398	45.259	45.598	-0.20226					13	9	2	0	0	0	0.027866	1	4356	4356		26.693	10.22	1	117040	+		88041	19069	61246	61347	97826	97826					-0.08785324150471752
VSSNHACN	8	Unmodified	_VSSNHACN_					0	0	0			REV__ADAT1|p.W165C|1|0.3|ENSG00000065457|chr16:75612791-75612791|C/A|missense_variant	REV__ADAT1|p.W165C|1|0.3|ENSG00000065457|chr16:75612791-75612791|C/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	416.174327	830.3341	-0.3125	-0.00013005	-3.8018	-0.0015822	-4.1143	-0.0017123	416.1727471142018	45.541	0.48195	45.442	45.221	45.703	-0.099445	0.0056891	-0.00013442	NaN	26.693	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126410	+		88042	19069	61246	61347							-0.08785324150471752
VSSPEKRFGL	10	Unmodified	_VSSPEKRFGL_					0	0	0			REV__ENSG00000214013|ENST00000318010|GANC	REV__ENSG00000214013|ENST00000318010|GANC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.7537231445312	2	560.31148	1118.60841	-0.94571	-0.00052989	-0.15713	-8.8041E-05	-1.1028	-0.00061793	560.3113525949489	55.851	0.50874	55.694	55.424	55.933	-0.15656					24	13	2	0	0	0	0.03519	1	5989	5989		16.717	0	1	554140	+		88043	28764	61247	61348	97827	97827					0.053848168803369845
VSSPPELI	8	Unmodified	_VSSPPELI_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000511715.1_1_4:119652437-119654049:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	421.8465576171875	2	421.236919	840.459284	-0.18861	-7.9448E-05	3.3279	0.0014018	3.1392	0.0013224	421.23783939818287	33.424	0.2312	33.224	33.094	33.325	-0.20019					8	5	2	0	0	0	0.027866	1	2385	2385		12.207	0	1	44901			88044	6161	61248	61349	97828	97828					0.032672912575776536
VSSPPICPIN	10	Unmodified	_VSSPPICPIN_					0	0	0			REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.3106079101562	2	513.76806	1025.52157	-1.1898	-0.0006113	-1.5761	-0.00080976	-2.766	-0.0014211	513.7670883883974	65.004	1.5672	65.004	64.538	66.105	0					103	42	3	0	0	0	0.03519	1	7661	7661		64.207	0	1	5941900	+		88045	35241	61249	61350	97829	97829					0.009826943342659433
VSSPPICPIN	10	Unmodified	_VSSPPICPIN_					0	0	0			REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.3106689453125	2	513.76806	1025.52157	-0.77514	-0.00039824	-2.0052	-0.0010302	-2.7803	-0.0014284	513.7668976255144	64.993	1.7642	65.031	64.44	66.205	0.037384					98	47	3	0	0	0	0.03519	1	7567	7567		74.255	0.28031	1	6424200	+		88046	35241	61249	61350	97830	97830					0.009826943342659433
VSSQKKGLP	9	Unmodified	_VSSQKKGLP_					0	0	0			REV__ENSG00000006062|ENST00000344686|MAP3K14	REV__ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.2817687988281	2	472.282192	942.549831	0.083685	3.9523E-05	-0.41918	-0.00019797	-0.33549	-0.00015845	472.2818940667008	47.238	1.0311	47.142	46.825	47.856	-0.096649					65	27	4	0	0	0	0.15029	1	4607	4607		99.375	11.621	1	4212600	+		88047	19821	61250	61351	97831	97831					0.0762576030585933
VSSQKKGLP	9	Unmodified	_VSSQKKGLP_					0	0	0			REV__ENSG00000006062|ENST00000344686|MAP3K14	REV__ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2816162109375	2	472.282192	942.549831	0.2434	0.00011496	-0.5646	-0.00026665	-0.32119	-0.00015169	472.28178001114645	47.491	0.91115	47.222	46.908	47.819	-0.26939					68	24	4	0	0	0	0.2508	1	4643	4643		82.241	15.811	1	3843100	+		88048	19821	61250	61351	97832	97832					0.0762576030585933
VSSRREPP	8	Unmodified	_VSSRREPP_					0	0	0		ENST00000557663.1_1_14:78205086-78227470:-|nuORF;ENSG00000100603|ENST00000261531|SNW1	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENST00000557663.1_1_14:78205086-78227470:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.2533874511719	2	464.253966	926.493378	0.05419	2.5158E-05	-0.053839	-2.4995E-05	0.00035099	1.6295E-07	464.2539312157307	78.696	1.7501	78.504	78.176	79.926	-0.19211					89	41	3	0	0	0	0.93274	1	9715	9715		47.916	7.1374	1	689810			88049	2228	61251	61352	97833	97833					0.027191324691784757
VSSSHSKRSNY	11	Unmodified	_VSSSHSKRSNY_					0	0	0			REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	REV__ENST00000297979.9_1_9:97849004-97849358:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	417.874755859375	3	417.874064	1250.60036	-0.8939	-0.00037354	2.1094	0.00088147	1.2155	0.00050793	417.8749360779523	37.248	1.253	37.028	36.647	37.9	-0.2195					71	32	3	0	0	0	0.9703	1	2986	2986		43.419	7.1009	1	4686300	+		88050	30018	61252	61353	97834	97834					-0.014913621070945737
VSSTGSGVIPG	11	Unmodified	_VSSTGSGVIPG_					0	0	0		ENST00000378700.7_2_6:19837626-19837662:+|nuORF	ENST00000378700.7_2_6:19837626-19837662:+|nuORF	ENST00000378700.7_2_6:19837626-19837662:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	481.21710205078125	2	480.753464	959.492375	-0.8848	-0.00042537	2.0495	0.00098532	1.1647	0.00055995	480.7545823320422	37.149	0.54493	36.929	36.686	37.231	-0.2195					19	13	2	0	0	0	0.024802	1	2964	2964		49.442	8.8689	1	223230			88051	13245	61253	61354	97835	97835					0.011008733096332435
VSTAPLHAVL	10	Unmodified	_VSTAPLHAVL_					0	0	0		nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	nc|ENSG00000258366|Q9NZ71-2|RTEL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	504.2973327636719	2	504.297842	1006.58113	-0.31658	-0.00015965	-1.8243	-0.00091999	-2.1409	-0.0010796	504.29633338861873	61.589	1.2254	61.589	60.996	62.222	0					90	32	5	0	0	0	1.0142	1	7147	7147		44.117	1.7207	1	15843000			88052	18776	61254	61355	97836	97836					0.0781033333993264
VSTATPQTQL	10	Unmodified	_VSTATPQTQL_					0	0	0		ENST00000492381.5_1_22:20909161-20940988:+|nuORF;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	ENST00000492381.5_1_22:20909161-20940988:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.30224609375	2	523.279846	1044.54514	-0.22735	-0.00011897	1.3245	0.0006931	1.0972	0.00057414	523.280485797459	52.238	0.5255	52.09	51.881	52.406	-0.14735					28	13	3	0	0	0	0.03519	1	5573	5573		104.06	0	1	1481700			88053	2097	61255	61356	97837	97837					0.02464831372435583
VSTAWAHW	8	Unmodified	_VSTAWAHW_					0	0	0		ENST00000557876.1_1_15:41221689-41222731:+|nuORF	ENST00000557876.1_1_15:41221689-41222731:+|nuORF	ENST00000557876.1_1_15:41221689-41222731:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	479.7895202636719	2	479.232502	956.450451	-0.34322	-0.00016448	-3.5843	-0.0017177	-3.9275	-0.0018822	479.2306961442544	34.071	0.38072	33.864	33.587	33.968	-0.20696					13	9	2	0	0	0	0.027866	1	2447	2447		13.775	0	1	183260			88054	16741	61256	61357	97838	97838					-0.029516375882622015
VSTCKRNW	8	Unmodified	_VSTCKRNW_					0	0	0		ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	ENSG00000172818|ENST00000335987|OVOL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.7693176269531	2	497.250369	992.486184	-0.39659	-0.0001972	1.9111	0.00095027	1.5145	0.00075307	497.2502970113188	25.122	0.2919	25.122	24.919	25.211	0					13	6	3	0	0	0	0.027866	1	1157	1157		31.955	8.9124	1	66892			88055	8312	61257	61358	97839	97839					-0.010359234029010622
VSTHPDAMN	9	Unmodified	_VSTHPDAMN_					0	0	0		ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant	ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.21539306640625	2	486.216192	970.41783	0.2839	0.00013804	-3.9881	-0.0019391	-3.7042	-0.0018011	486.21447223164955	97.845	3.8348	97.856	95.908	99.743	0.010231					188	88	3	0	0	0	0.75397	1	12462	12462		42.396	11.892	1	309580			88056	6240	61258	61359	97840	97840					-0.06856212773413972
VSTIAGLVSL	10	Unmodified	_VSTIAGLVSL_					0	0	0			REV__ENSG00000120705|ENST00000360541|ETF1	REV__ENSG00000120705|ENST00000360541|ETF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.28900146484375	2	480.292225	958.569897	1.0408	0.0004999	2.8029	0.0013462	3.8437	0.0018461	480.29319128721284	65.911	0.38425	65.911	65.721	66.105	0					19	9	3	0	0	0	0.03519	1	7831	7831		93.195	43.659	1	368810	+		88057	22552	61259	61360	97841	97841					0.08895511245816579
VSTIKGRNL	9	Unmodified	_VSTIKGRNL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3149108886719	2	494.300916	986.587279	-0.089522	-4.4251E-05	-3.4981	-0.0017291	-3.5876	-0.0017734	494.2990687932548	73.408	0.44396	73.408	73.109	73.553	0					19	11	2	0	0	0	0.024427	1	8980	8980		42.396	6.7778	1	412230			88058	7039	61260	61361	97842	97842					0.09344851571461277
VSTKEMRNL	9	Unmodified	_VSTKEMRNL_					0	0	0			REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2907104492188	2	539.289691	1076.56483	-0.58648	-0.00031629	-0.94041	-0.00050715	-1.5269	-0.00082344	539.289677164464	34.671	0.91647	34.464	33.895	34.812	-0.20696					58	22	3	0	0	0	0.50848	1	2557	2557		58.782	0.55203	1	2829800	+		88059	26409	61261	61362	97843	97843					0.02960884111530504
VSTLNRFT	8	Unmodified	_VSTLNRFT_					0	0	0			REV__ENSG00000198429|ENST00000429654|ZNF69	REV__ENSG00000198429|ENST00000429654|ZNF69	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.2690734863281	2	469.258717	936.50288	-0.073635	-3.4554E-05	0.60517	0.00028398	0.53153	0.00024943	469.2581228698023	56.733	0.31796	56.733	56.46	56.778	0					10	8	2	0	0	0	0.027866	1	6320	6320		73.975	31.579	1	38346	+		88060	28422	61262	61363	97844	97844					0.0320890075471425
VSTLYIDQG	9	Unmodified	_VSTLYIDQG_					0	0	0			REV__ENST00000434581.6_1_8:56675543-56676522:-|nuORF	REV__ENST00000434581.6_1_8:56675543-56676522:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.2558288574219	2	498.25584	994.497126	0.20765	0.00010346	-1.1697	-0.00058282	-0.96207	-0.00047936	498.2553489142421	43.538	0.90734	43.569	43.229	44.136	0.030827					106	24	8	0	0	0	0.31037	1	4042	4042		74.255	6.7614	1	12959000	+		88061	32425	61263	61364	97845	97845					-0.0003424254762194323
VSTMNHPVL	9	Unmodified	_VSTMNHPVL_					0	0	0		ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.2879638671875	2	499.260402	996.506251	0.24019	0.00011992	-3.3394	-0.0016672	-3.0992	-0.0015473	499.2584567977729	49.541	1.3757	49.541	48.899	50.274	0					108	38	4	0	0	0	0.024	1	5057	5057		55.504	18.345	1	820050			88062	15211	61264	61365	97846	97846					0.00785827537060868
VSTMNHPVL	9	Unmodified	_VSTMNHPVL_					0	0	0		ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.260402	996.506251	0.079457	3.967E-05	-3.3147	-0.0016549	-3.2352	-0.0016152	499.25865093632336	49.91	1.6941	49.804	48.987	50.681	-0.10558	0.11415	-0.00018183	NaN	55.504	82	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	971340			88063	15211	61264	61365							0.00785827537060868
VSTMNHPVL	9	Unmodified	_VSTMNHPVL_					0	0	0		ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	499.260402	996.506251	0.026366	1.3164E-05	-3.2178	-0.0016065	-3.1914	-0.0015934	499.2586022990763	49.896	1.6873	49.616	49.011	50.699	-0.27977	-0.073916	-8.511E-05	NaN	55.504	83	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	963210			88064	15211	61264	61365							0.00785827537060868
VSTMNHPVL	9	Unmodified	_VSTMNHPVL_					0	0	0		ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	499.260402	996.506251	0.048777	2.4352E-05	-3.5895	-0.0017921	-3.5408	-0.0017678	499.25854595415325	49.998	1.5697	49.817	49.04	50.61	-0.18071	0.12701	-0.00045631	NaN	55.504	93	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802990			88065	15211	61264	61365							0.00785827537060868
VSTPAITYI	9	Unmodified	_VSTPAITYI_					0	0	0		ENST00000335730.6_1_18:44089558-44181581:-|nuORF	ENST00000335730.6_1_18:44089558-44181581:-|nuORF	ENST00000335730.6_1_18:44089558-44181581:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.77099609375	2	482.771126	963.527698	-0.050672	-2.4463E-05	0.22155	0.00010696	0.17088	8.2496E-05	482.7709949324258	95.925	0.97936	95.768	95.4	96.379	-0.15646					45	22	4	0	0	0	0.43973	1	11852	11852		63.306	17.354	1	1296100			88066	12396	61265	61366	97847	97847					0.04447535837402938
VSTPKLQSI	9	Unmodified	_VSTPKLQSI_					0	0	0		ENST00000460448.5_1_3:167254737-167322194:-|nuORF	ENST00000460448.5_1_3:167254737-167322194:-|nuORF	ENST00000460448.5_1_3:167254737-167322194:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.7899169921875	2	486.78985	971.565146	-0.084576	-4.1171E-05	-0.36461	-0.00017749	-0.44919	-0.00021866	486.7896047044664	51.855	0.92472	51.855	51.466	52.391	0					71	25	5	0	0	0	0.30449	1	5519	5519		75.043	5.4157	1	4112200			88067	14655	61266	61367	97848	97848					0.07822627103041668
VSTPKLQSI	9	Unmodified	_VSTPKLQSI_					0	0	0		ENST00000460448.5_1_3:167254737-167322194:-|nuORF	ENST00000460448.5_1_3:167254737-167322194:-|nuORF	ENST00000460448.5_1_3:167254737-167322194:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.78985595703125	2	486.78985	971.565146	-0.44132	-0.00021483	0.061758	3.0063E-05	-0.37957	-0.00018477	486.78974038536256	52.006	1.2191	51.859	51.228	52.447	-0.14735					78	33	4	0	0	0	0.33603	1	5518	5518		70.816	1.1886	1	3801500			88068	14655	61266	61367	97849	97849					0.07822627103041668
VSTRLPPI	8	Unmodified	_VSTRLPPI_					0	0	0			REV__nc|ENSG00000169550|Q8N387-2|MUC15	REV__nc|ENSG00000169550|Q8N387-2|MUC15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	2	441.774003	881.533452	-0.52447	-0.0002317	0.99607	0.00044004	0.4716	0.00020834	441.77430365320686	31.385	0.53389	31.385	31.216	31.749	0					19	12	2	0	0	0	0.027866	1	2115	2115		19.36	6.4008	1	211320	+		88069	26377	61267	61368	97850	97850					0.08794679139748496
VSTRQTQSW	9	Unmodified	_VSTRQTQSW_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.774658203125	2	546.775262	1091.53597	-0.4014	-0.00021948	-0.22039	-0.0001205	-0.62179	-0.00033998	546.775311630531	33.403	0.6021	33.172	32.876	33.478	-0.23107					34	14	4	0	0	0	0.030064	2	2390	2378;2390		141.52	53.824	1	1550800			88070	6260	61268	61369	97851;97852	97852					-0.006135171932328376
VSTRQTQSW	9	Unmodified	_VSTRQTQSW_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.7747802734375	2	546.775262	1091.53597	-0.40998	-0.00022417	-0.23883	-0.00013059	-0.64881	-0.00035475	546.7752392717447	33.383	0.50484	33.183	32.937	33.442	-0.20019					42	12	5	0	0	0	0.030064	2	2382	2371;2382		141.52	64.746	1	1775600			88071	6260	61268	61369	97853;97854	97854					-0.006135171932328376
VSTRQTQSW	9	Unmodified	_VSTRQTQSW_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.7734985351562	2	546.775262	1091.53597	-1.201	-0.00065668	0.65782	0.00035968	-0.54319	-0.000297	546.775693968468	33.263	0.60171	33.098	32.8	33.401	-0.16565					37	14	4	0	0	0	0.058169	1	2340	2340		125.71	35.343	1	1622700			88072	6260	61268	61369	97855	97855					-0.006135171932328376
VSTSKGAGATG	11	Unmodified	_VSTSKGAGATG_					0	0	0			REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	REV__sp|P03214|HELI_EBVB9DNAreplicationhelicaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=HELIPE=3SV=1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	468.24493408203125	2	468.243264	934.471974	0.84537	0.00039584	2.4926	0.0011671	3.338	0.001563	468.2442937403857	103.2	1.893	103.19	102.28	104.18	-0.0046005					118	45	4	0	0	0	0.98542	1	13200	13200		40.058	7.2458	1	6166300	+		88073	37542	61269	61370	97856	97856					0.002117026498240193
VSTSNSRAR	9	Unmodified	_VSTSNSRAR_					0	0	0			REV__nc|ENSG00000172349|Q14005-2|IL16	REV__nc|ENSG00000172349|Q14005-2|IL16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7900085449219	2	489.259779	976.505006	0.95257	0.00046605	2.1688	0.0010611	3.1214	0.0015272	489.2609414291307	22.696	0.59968	22.494	22.24	22.84	-0.20199					22	12	3	0	0	0	0.024427	1	792	792		34.173	8.7224	1	240280	+		88074	26662	61270	61371	97857	97857					0.015813294925237642
VSTSSFVK	8	Unmodified	_VSTSSFVK_					0	0	0			REV__ENSG00000163867|ENST00000357182|ZMYM6;REV__ENST00000493328.5_1_1:35455862-35480681:-|nuORF	REV__ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	427.7580871582031	2	427.734543	853.454533	0.34239	0.00014645	4.2737	0.001828	4.6161	0.0019745	427.735785262341	41.354	0.45823	41.377	41.04	41.498	0.023006					16	12	2	0	0	0	0.027866	1	3671	3671		16.473	0	1	128960	+		88075	25647;33762	61271	61372	97858	97858					0.02194407114814112
VSTVKKLA	8	Unmodified	_VSTVKKLA_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.2748718261719	2	423.276378	844.538203	1.05	0.00044445	-4.4628	-0.001889	-3.4128	-0.0014446	423.2743858254429	87.783	1.1949	87.802	87.388	88.583	0.018555					70	28	4	0	0	0	1.0574	1	10979	10979		17.365	1.7232	1	2440400	+		88076	27297	61272	61373	97859	97859					0.10971563282510033
VSTVVFSK	8	Unmodified	_VSTVVFSK_					0	0	0			REV__ENSG00000149418|ENST00000278742|ST14	REV__ENSG00000149418|ENST00000278742|ST14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.25543212890625	2	433.752736	865.490919	0.47258	0.00020498	3.9091	0.0016956	4.3817	0.0019006	433.755344543748	102.94	2.2569	102.81	102.31	104.57	-0.12724					120	55	5	0	0	0	0.027866	1	12753	12753		27.882	0	1	93657000	+		88077	24674	61273	61374	97860	97860					0.052792840115330364
VSTVWASYI	9	Unmodified	_VSTVWASYI_					0	0	0			REV__nc|ENSG00000171224|Q96D05-2|FAM241B	REV__nc|ENSG00000171224|Q96D05-2|FAM241B	MSMS	OPSCC_39_ClassI_Rep-3	3	513.2677612304688	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.96	1	104.96	104.46	105.46	-0.0015945								0	0	0	0.55237	1	13395	13395		45.952	5.1738	1		+		88078	36929	61274	61375	97861	97861					0.011666516946434058
VSTYRVAVL	9	Unmodified	_VSTYRVAVL_					0	0	0		ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	ENSG00000270885|ENST00000603017|RASL10B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2971496582031	2	504.297842	1006.58113	-0.93965	-0.00047387	0.75566	0.00038108	-0.18399	-9.2787E-05	504.29810868059883	61.803	1.0546	61.625	61.329	62.383	-0.17781					91	26	5	0	0	0	0.4752	1	6911	6911		60.972	5.4677	1	4994100			88079	11004	61275	61376	97862	97862					0.0781033333993264
VSVAAVGGVVE	11	Unmodified	_VSVAAVGGVVE_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	494.3149108886719	2	493.779482	985.544411	-0.29668	-0.0001465	1.1724	0.00057893	0.87576	0.00043243	493.7795295717733	73.171	0.73394	73.171	72.782	73.516	0					36	18	3	0	0	0	0.024741	1	8980	8980		37.812	14.769	1	427860			88080	10162	61276	61377	97863	97863					0.05106036723395846
VSVAAVGGVVE	11	Unmodified	_VSVAAVGGVVE_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	493.779482	985.544411	-0.22535	-0.00011127	0.86697	0.00042809	0.64162	0.00031682	493.7795261308868	73.46	0.65454	73.188	72.883	73.538	-0.27126	-0.0078919	-0.00010802	NaN	30.318	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539300			88081	10162	61276	61377							0.05106036723395846
VSVAAVGGVVE	11	Unmodified	_VSVAAVGGVVE_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	493.779482	985.544411	-0.22824	-0.0001127	0.78228	0.00038627	0.55404	0.00027358	493.7795406018092	73.165	0.65951	73.175	72.859	73.519	0.0096512	-0.021273	-0.00019166	NaN	30.318	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626760			88082	10162	61276	61377							0.05106036723395846
VSVAAVGGVVE	11	Unmodified	_VSVAAVGGVVE_					0	0	0		ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	ENSG00000198646|ENST00000359003|NCOA6	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.779482	985.544411	-0.20837	-0.00010289	2.0515	0.001013	1.8432	0.00091011	493.7799554844795	73.441	0.35869	73.251	73.16	73.519	-0.19026	0.054502	0.0010618	NaN	30.318	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90473			88083	10162	61276	61377							0.05106036723395846
VSVDKQQQW	9	Unmodified	_VSVDKQQQW_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	559.2855224609375	2	559.285463	1116.55637	-0.374	-0.00020917	0.51146	0.00028605	0.13746	7.6879E-05	559.2855526074765	39.839	0.75883	39.689	39.394	40.153	-0.1497					59	19	4	0	0	0	0.01388	3	3408	3396;3408;3422		180.87	60.81	1	4012500			88084	6477	61277	61378	97864;97865;97866	97865					0.002756534665650179
VSVDKQQQW	9	Unmodified	_VSVDKQQQW_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.28662109375	2	559.285463	1116.55637	-0.23714	-0.00013263	0.42374	0.00023699	0.1866	0.00010436	559.2855322066947	39.988	0.8356	39.763	39.46	40.296	-0.225					62	21	4	0	0	0	0.013924	4	3403	3403;3415;3426;3439		209.84	85.76	1	3771500			88085	6477	61277	61378	97867;97868;97869;97870	97867					0.002756534665650179
VSVDKQQQW	9	Unmodified	_VSVDKQQQW_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.285888671875	2	559.285463	1116.55637	-0.65694	-0.00036741	0.89524	0.00050069	0.2383	0.00013328	559.2858250643561	39.99	0.88335	39.759	39.352	40.235	-0.23021					67	22	4	0	0	0	0.015713	3	3401	3401;3413;3425		205.58	84.944	1	4039000			88086	6477	61277	61378	97871;97872;97873	97871					0.002756534665650179
VSVDKVNSH	9	Unmodified	_VSVDKVNSH_					0	0	0			REV__ENSG00000175115|ENST00000320580|PACS1	REV__ENSG00000175115|ENST00000320580|PACS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.7957458496094	2	492.759081	983.503609	-1.093	-0.0005386	-2.1422	-0.0010556	-3.2352	-0.0015942	492.75776240840656	55.248	0.52271	55.102	54.8	55.322	-0.14609					26	14	2	0	0	0	0.024466	1	5870	5870		31.53	0	1	254700	+		88087	26918	61278	61379	97874	97874					0.01119695403770038
VSVEKIDL	8	Unmodified	_VSVEKIDL_					0	0	0		ENSG00000140948|ENST00000671377|ZCCHC14;nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7732849121094	2	451.7633	901.512048	0.066599	3.0087E-05	0.18882	8.5302E-05	0.25542	0.00011539	451.7632407364503	78.931	0.95054	78.95	78.524	79.475	0.018677					41	22	3	0	0	0	0.027866	1	9740	9740		20.482	0	1	327600			88088	5454	61279	61380	97875	97875					0.057352493203779886
VSVFLRLF	8	Unmodified	_VSVFLRLF_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2610778808594	2	490.80002	979.585488	-0.97989	-0.00048093	-3.2537	-0.0015969	-4.2336	-0.0020778	490.79823330372693	39.873	0.66665	39.761	39.467	40.134	-0.11223					40	17	3	0	0	0	0.027866	1	3501	3501		20.482	0	1	848250	+		88089	26328	61280	61381	97876	97876					0.09487842553494374
VSVFTKKDD	9	Unmodified	_VSVFTKKDD_					0	0	0		ENST00000518860.1_1_8:67592692-67597653:+|nuORF	ENST00000518860.1_1_8:67592692-67597653:+|nuORF	ENST00000518860.1_1_8:67592692-67597653:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2640991210938	2	519.776939	1037.53933	-0.71934	-0.0003739	-3.9222	-0.0020387	-4.6415	-0.0024125	519.7748723826253	57.773	0.3559	57.595	57.319	57.675	-0.17775					11	8	2	0	0	0	0.024418	1	6286	6286		30.318	9.3708	1	219640			88090	15938	61281	61382	97877	97877					0.022057328607616
VSVHVSRP	8	Unmodified	_VSVHVSRP_					0	0	0		ENST00000569471.1_1_16:28880556-28883354:+|nuORF	ENST00000569471.1_1_16:28880556-28883354:+|nuORF	ENST00000569471.1_1_16:28880556-28883354:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.2106628417969	2	440.753601	879.49265	0.0879	3.8742E-05	-4.4025	-0.0019404	-4.3146	-0.0019017	440.75154551422935	50.62	0.55376	50.34	50.108	50.661	-0.27977					19	14	2	0	0	0	0.027866	1	5177	5177		38.806	0	1	417310			88091	17004	61282	61383	97878	97878					0.048083378201340565
VSVHYDPMI	9	Unmodified	_VSVHYDPMI_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.7584838867188	2	530.760235	1059.50592	-0.84082	-0.00044628	-2.2323	-0.0011848	-3.0731	-0.0016311	530.758924175091	96.829	1.243	96.829	96.44	97.683	0					62	27	4	0	0	0	0.4752	1	12378	12378		60.972	19.545	1	585380			88092	1626	61283	61384	97879	97879					-0.02145592182796463
VSVIKICLPHV	11	Unmodified	_VSVIKICLPHV_					0	0	0		ENST00000477973.3_2_3:72426341-72426569:-|nuORF	ENST00000477973.3_2_3:72426341-72426569:-|nuORF	ENST00000477973.3_2_3:72426341-72426569:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	604.3662109375	2	604.365201	1206.71585	-0.44134	-0.00026673	3.113	0.0018814	2.6716	0.0016146	604.366999948973	103.28	2.0338	103.29	102.93	104.96	0.0054169					124	54	5	0	0	0	1.0371	1	13280	13280		13.454	0	1	5077600			88093	15124	61284	61385	97880	97880					0.12076070490161328
VSVKLVGIV	9	Unmodified	_VSVKLVGIV_					0	0	0			REV__ENST00000399070.3_2_18:32886088-32886400:+|nuORF	REV__ENST00000399070.3_2_18:32886088-32886400:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.2893981933594	2	457.307678	912.600803	0.4409	0.00020163	0.4397	0.00020108	0.8806	0.00040271	457.3069289294396	94.037	0.75733	94.037	93.645	94.402	0					24	18	2	0	0	0	0.024344	1	11900	11900		45.972	0	1	95993	+		88094	31819	61285	61386	97881	97881					0.141007093507028
VSVKSGYVAL	10	Unmodified	_VSVKSGYVAL_					0	0	0		ENST00000397887.7_1_21:46270219-46270474:-|nuORF	ENST00000397887.7_1_21:46270219-46270474:-|nuORF	ENST00000397887.7_1_21:46270219-46270474:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.8089294433594	2	511.797675	1021.5808	-0.66621	-0.00034096	-2.5189	-0.0012892	-3.1851	-0.0016301	511.79629997112323	22.289	0.42437	22.104	21.811	22.236	-0.18539					13	8	2	0	0	0	0.03519	1	761	761		31.53	13.205	1	57528			88095	13607	61286	61387	97882	97882					0.07086913620082669
VSVLCRLL	8	Carbamidomethyl (C)	_VSVLC(Carbamidomethyl (C))RLL_	VSVLC(1)RLL		VSVLC(66)RLL		0	1	0		ENST00000377057.5_1_9:74300115-74313140:-|nuORF	ENST00000377057.5_1_9:74300115-74313140:-|nuORF	ENST00000377057.5_1_9:74300115-74313140:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2879638671875	2	480.288963	958.563372	-0.83971	-0.0004033	-2.8214	-0.0013551	-3.6612	-0.0017584	480.2875290363212	65.999	1.028	65.786	65.421	66.449	-0.21327					81	25	5	0	0	0	0.71833	1	7588	7588		65.803	7.9919	1	7017800			88096	13197	61287	61388	97883	97883	178				0.0824329481345103
VSVLFVVIP	9	Unmodified	_VSVLFVVIP_					0	0	0		ENSG00000177476|ENST00000320002|OR2G3	ENSG00000177476|ENST00000320002|OR2G3	ENSG00000177476|ENST00000320002|OR2G3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.2568359375	2	486.810054	971.605554	-0.78456	-0.00038193	-3.6717	-0.0017874	-4.4562	-0.0021693	486.80804545171486	25.709	0.55623	25.709	25.445	26.001	0					24	12	3	0	0	0	0.024386	1	1218	1218		42.474	7.2737	1	242760			88097	8743	61288	61389	97884	97884					0.11861593493460987
VSVLYTVVI	9	Unmodified	_VSVLYTVVI_					0	0	0		OR5P3|p.F277L|1|0.16|ENSG00000182334|chr11:7825142-7825142|G/C|missense_variant;ENSG00000183303|ENST00000329434|OR5P2	OR5P3|p.F277L|1|0.16|ENSG00000182334|chr11:7825142-7825142|G/C|missense_variant	OR5P3|p.F277L|1|0.16|ENSG00000182334|chr11:7825142-7825142|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	496.2656555175781	2	496.804968	991.595384	-0.57022	-0.00028329	-2.5199	-0.0012519	-3.0901	-0.0015352	496.8034542891286	37.496	0.38993	37.432	37.232	37.622	-0.063385					14	10	2	0	0	0	0.024205	1	3050	3050		63.306	5.495	1	101330			88098	9212	61289	61390	97885	97885					0.09924985768248007
VSVMETFLL	9	Unmodified	_VSVMETFLL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	520.2638549804688	2	519.780636	1037.54672	-0.86173	-0.00044791	3.9232	0.0020392	3.0615	0.0015913	519.7848145612705	57.58	0.49915	57.402	57.096	57.596	-0.17776					27	12	3	0	0	0	0.024323	1	6263	6263		53.351	21.397	1	174830			88099	5587	61290	61391	97886	97886					0.029447491368273404
VSVNRPAL	8	Unmodified	_VSVNRPAL_					0	0	0		nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	427.7580261230469	2	428.255977	854.497401	0.032587	1.3956E-05	-2.7056	-0.0011587	-2.673	-0.0011447	428.25457605607716	41.802	0.8271	41.802	41.36	42.187	0					35	23	2	0	0	0	0.027866	1	3719	3719		60.972	20.194	1	281170			88100	2090	61291	61392	97887	97887					0.06433221962879543
VSVNRPAL	8	Unmodified	_VSVNRPAL_					0	0	0		nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	428.255977	854.497401	-0.28521	-0.00012214	-1.5904	-0.00068108	-1.8756	-0.00080323	428.25505118358257	41.982	0.62349	41.85	41.491	42.115	-0.1322	-0.022746	0.00038404	NaN	54.776	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267930			88101	2090	61291	61392							0.06433221962879543
VSVNRPAL	8	Unmodified	_VSVNRPAL_					0	0	0		nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	428.255977	854.497401	0.25129	0.00010762	-2.3733	-0.0010164	-2.122	-0.00090876	428.25478085175234	41.94	0.72226	41.966	41.567	42.289	0.026012	0.093013	-0.00028655	NaN	54.776	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253160			88102	2090	61291	61392							0.06433221962879543
VSVNWPNAH	9	Unmodified	_VSVNWPNAH_					0	0	0		ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.2529907226562	2	512.253966	1022.49338	-0.047938	-2.4556E-05	-0.96003	-0.00049178	-1.008	-0.00051633	512.253584548123	54.26	2.8382	54.113	53.566	56.404	-0.14723					223	79	5	0	0	0	0.39228	1	5981	5981		66.429	13.078	1	25579000			88103	14900	61292	61393	97888	97888					-0.01696867530813506
VSVPNEPMVTT	11	Unmodified	_VSVPNEPMVTT_					0	0	0			REV__ENST00000256194.8_2_11:12159950-12183696:+|nuORF	REV__ENST00000256194.8_2_11:12159950-12183696:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	587.296875	2	587.294639	1172.57472	0.44226	0.00025974	1.4363	0.0008435	1.8785	0.0011032	587.2954195931204	73.529	0.49594	73.539	73.217	73.713	0.0096512					44	12	5	0	0	0	1.0429	1	8894	8894		27.047	0.3544	1	12280000	+		88104	29551	61293	61394	97889	97889					-0.004659726737372694
VSVSGQRV	8	Unmodified	_VSVSGQRV_					0	0	0			REV__ENST00000316059.6_1_11:58385841-58385949:+|nuORF	REV__ENST00000316059.6_1_11:58385841-58385949:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.238525390625	2	416.237784	830.461016	-0.068542	-2.853E-05	2.074	0.00086327	2.0054	0.00083474	416.2384853766801	21.846	1.7794	21.757	21.5	23.279	-0.089378					72	38	4	0	0	0	1.0239	1	712	712		33.516	0	1	525730	+		88105	30275	61294	61395	97890	97890					0.03900345066176669
VSVTSFLL	8	Unmodified	_VSVTSFLL_					0	0	0			REV__ENST00000237889.8_1_2:201936481-201936628:+|nuORF	REV__ENST00000237889.8_1_2:201936481-201936628:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.25665283203125	2	433.255111	864.49567	0.26876	0.00011644	-1.0754	-0.00046594	-0.80668	-0.0003495	433.25445370024414	97.887	0.49548	97.722	97.442	97.938	-0.1652					20	11	2	0	0	0	0.97924	1	12093	12093		40.573	0	1	243420	+		88106	29437	61295	61396	97891	97891					0.05800168154291896
VSVVKNTLI	9	Unmodified	_VSVVKNTLI_					0	0	0			REV__ENSG00000176787|ENST00000321522|OR52E2	REV__ENSG00000176787|ENST00000321522|OR52E2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.2568664550781	2	486.808042	971.601532	-0.71481	-0.00034797	0.48523	0.00023622	-0.22957	-0.00011176	486.80801023582393	25.742	0.55652	25.707	25.474	26.03	-0.034395					24	12	3	0	0	0	0.02435	1	1203	1203		26.693	0	1	234020	+		88107	27047	61296	61397	97892	97892					0.11459503999765275
VSVVPWSP	8	Unmodified	_VSVVPWSP_					0	0	0		DHX9|p.G328S|1|0.27|ENSG00000135829|chr1:182858814-182858814|G/A|missense_variant	DHX9|p.G328S|1|0.27|ENSG00000135829|chr1:182858814-182858814|G/A|missense_variant	DHX9|p.G328S|1|0.27|ENSG00000135829|chr1:182858814-182858814|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	434.7803955078125	2	435.739628	869.464704	0.93671	0.00040816	-4.2922	-0.0018703	-3.3555	-0.0014621	435.73737035596275	40.817	0.64424	40.693	40.371	41.016	-0.12317					34	17	3	0	0	0	0.027866	1	3646	3646		40.573	10.069	1	786210			88108	638	61297	61398	97893	97893					0.02475014840035783
VSWDGNPERY	10	Unmodified	_VSWDGNPERY_					0	0	0		ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENSG00000149573|ENST00000278937|MPZL2	ENSG00000149573|ENST00000278937|MPZL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	611.7781982421875	2	611.778002	1221.54145	-1.6928	-0.0010356	1.6621	0.0010168	-0.03069	-1.8775E-05	611.7789488508715	49.202	0.80226	49.101	48.765	49.567	-0.1008					38	20	2	0	0	0	0.13984	3	4932	4921;4932;4945		128.6	69.82	1	3008800			88109	6103	61298	61399	97894;97895;97896	97895					-0.060458384014282274
VSWDGNPERY	10	Unmodified	_VSWDGNPERY_					0	0	0		ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENSG00000149573|ENST00000278937|MPZL2	ENSG00000149573|ENST00000278937|MPZL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	611.7776489257812	2	611.778002	1221.54145	-0.25741	-0.00015747	0.12023	7.3556E-05	-0.13717	-8.3919E-05	611.7780213078138	49.54	0.83134	49.26	48.934	49.766	-0.27977					40	21	2	0	0	0	0.082298	2	4973	4961;4973		140.11	67.233	1	3031900			88110	6103	61298	61399	97897;97898	97898					-0.060458384014282274
VSWDGNPERY	10	Unmodified	_VSWDGNPERY_					0	0	0		ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENSG00000149573|ENST00000278937|MPZL2	ENSG00000149573|ENST00000278937|MPZL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.7787475585938	2	611.778002	1221.54145	-0.29006	-0.00017745	-0.23567	-0.00014418	-0.52572	-0.00032163	611.7778883781315	49.251	0.93756	49.069	48.631	49.569	-0.18206					102	24	6	0	0	0	0.13984	2	4949	4939;4949		128.6	69.82	1	3825000			88111	6103	61298	61399	97899;97900	97900					-0.060458384014282274
VSWFDLSLL	9	Unmodified	_VSWFDLSLL_					0	0	0			REV__ENSG00000166676|ENST00000299866|TVP23A	REV__ENSG00000166676|ENST00000299866|TVP23A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8097534179688	2	540.292225	1078.5699	0.67103	0.00036255	-3.0652	-0.0016561	-2.3942	-0.0012936	540.2902805639111	63.692	0.39829	63.692	63.447	63.845	0					17	10	2	0	0	0	0.024294	1	7484	7484		29.15	0	1	272870	+		88112	26041	61299	61400	97901	97901					0.03375511245803864
VSWPVPGI	8	Unmodified	_VSWPVPGI_					0	0	0			REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF	REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	427.75836181640625	2	427.742171	853.469789	0.0678	2.9001E-05	2.7453	0.0011743	2.8131	0.0012033	427.74156551078204	41.389	0.20638	41.266	41.189	41.396	-0.12317					6	5	2	0	0	0	0.027866	1	3698	3698		60.294	5.5293	1	53919	+		88113	32286	61300	61401	97902	97902					0.03719318702667351
VSWTERPL	8	Unmodified	_VSWTERPL_					0	0	0			REV__ENST00000532840.5_1_11:46958356-47159359:+|nuORF	REV__ENST00000532840.5_1_11:46958356-47159359:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.29522705078125	2	494.266542	986.51853	-0.52138	-0.0002577	-1.654	-0.00081753	-2.1754	-0.0010752	494.2644655170402	53.169	0.37123	53.022	52.797	53.168	-0.14723					13	9	2	0	0	0	0.027866	1	5722	5722		30.504	0	1	114790	+		88114	34588	61301	61402	97903	97903					0.024731872717552505
VSWTSLLDT	9	Unmodified	_VSWTSLLDT_					0	0	0			REV__ENSG00000163704|ENST00000412055|PRRT3	REV__ENSG00000163704|ENST00000412055|PRRT3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2743835449219	2	511.263665	1020.51278	-0.40214	-0.0002056	0.1189	6.0789E-05	-0.28324	-0.00014481	511.76513913021125	75.655	0.43999	75.397	75.117	75.557	-0.25865					17	10	2	0	0	0	0.024405	1	8960	8960		35.618	6.4687	1	90047	+		88115	25621	61302	61403	97904	97904					0.003340439694284214
VSYFQKRLW	9	Unmodified	_VSYFQKRLW_					0	0	0			REV__ENSG00000124181|ENST00000685551|PLCG1	REV__ENSG00000124181|ENST00000685551|PLCG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	409.54266357421875	3	409.560869	1225.66078	0.61663	0.00025255	-0.65524	-0.00026836	-0.038619	-1.5817E-05	409.5608941691959	21.981	0.33066	21.793	21.628	21.959	-0.18894					9	6	2	0	0	0	0.024447	1	727	727		32.812	0	1	17057	+		88116	22742	61303	61404	97905	97905					0.05697400013946208
VSYICIHTP	9	Carbamidomethyl (C)	_VSYIC(Carbamidomethyl (C))IHTP_	VSYIC(1)IHTP		VSYIC(63)IHTP		0	1	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|165|1|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|165|1|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.0865637028273571|0.1317034148076854|3.04|507.0|165|1|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.2756958007812	2	545.273509	1088.53247	-0.96677	-0.00052716	2.5394	0.0013847	1.5727	0.00085753	545.2753809685528	77.542	6.3003	77.556	74.937	81.237	0.013504					258	155	3	0	0	0	0.43973	1	9468	9468		63.306	9.9548	1	52905000			88117	17848	61304	61405	97906	97906	235				-0.008259032914565978
VSYIVQILS	9	Unmodified	_VSYIVQILS_					0	0	0		ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	ENSG00000213918|ENST00000246949|DNASE1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.281982421875	2	511.30005	1020.58555	-0.14898	-7.6173E-05	0.89514	0.00045768	0.74616	0.00038151	511.3001781801385	55.766	0.72862	55.61	55.194	55.922	-0.15601					30	19	2	0	0	0	0.024541	1	6197	6197		19.997	9.1312	1	425280			88118	10528	61305	61406	97907	97907					0.07607797762852897
VSYPYPTVFLL	11	Unmodified	_VSYPYPTVFLL_					0	0	0		ENST00000393800.6_2_11:68228258-68287015:+|nuORF	ENST00000393800.6_2_11:68228258-68287015:+|nuORF	ENST00000393800.6_2_11:68228258-68287015:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	433.58392333984375	3	433.572552	1297.69583	-0.033924	-1.4708E-05	-1.9787	-0.00085792	-2.0127	-0.00087263	433.5716222418229	47.523	0.77153	47.427	46.897	47.668	-0.096649					42	20	4	0	0	0	0.024743	1	4588	4588		43.651	20.273	1	344460			88119	13467	61306	61407	97908	97908					0.05888598031242509
VSYPYPTVFLL	11	Unmodified	_VSYPYPTVFLL_					0	0	0		ENST00000393800.6_2_11:68228258-68287015:+|nuORF	ENST00000393800.6_2_11:68228258-68287015:+|nuORF	ENST00000393800.6_2_11:68228258-68287015:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	433.572552	1297.69583	-0.18291	-7.9303E-05	-2.1511	-0.00093265	-2.334	-0.0010119	433.57153182362254	47.899	0.50749	47.623	47.344	47.851	-0.27598	0.12204	0.00011277	NaN	36.318	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341870			88120	13467	61306	61407							0.05888598031242509
VSYPYPTVFLL	11	Unmodified	_VSYPYPTVFLL_					0	0	0		ENST00000393800.6_2_11:68228258-68287015:+|nuORF	ENST00000393800.6_2_11:68228258-68287015:+|nuORF	ENST00000393800.6_2_11:68228258-68287015:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	433.572552	1297.69583	0.51051	0.00022135	-2.725	-0.0011815	-2.2144	-0.00096012	433.5712196150371	47.64	0.51237	47.453	47.161	47.673	-0.18684	-0.047968	-0.0006337	NaN	36.318	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327830			88121	13467	61306	61407							0.05888598031242509
VSYYKSAI	8	Unmodified	_VSYYKSAI_					0	0	0		nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-2|RMDN2	MSMS	OPSCC_39_ClassI_Rep-1	1	465.7494812011719	2	465.750193	929.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.601	1	29.601	29.101	30.101	0								0	0	0	0.5562	1	1829	1829		51.335	1.3109	1				88122	18193	61307	61408	97909	97909					0.01826980148905477
VTAALKLLCS	10	Unmodified	_VTAALKLLCS_					0	0	0			REV__ENST00000316461.8_1_11:62496181-62496406:+|nuORF	REV__ENST00000316461.8_1_11:62496181-62496406:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	509.8039245605469	2	509.801903	1017.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.466	1	88.329	87.829	88.829	-0.13744								0	0	0	0.75273	1	10774	10774		44.377	15.228	1		+		88123	30279	61308	61409	97910	97910					0.08116144265056846
VTAALSHTV	9	Unmodified	_VTAALSHTV_					0	0	0		nc|ENSG00000152254|Q9NQR9-3|G6PC2;ENSG00000152254|ENST00000375363|G6PC2	nc|ENSG00000152254|Q9NQR9-3|G6PC2	nc|ENSG00000152254|Q9NQR9-3|G6PC2	MSMS	OPSCC_39_ClassI_Rep-2	2	449.7532653808594	2	449.753267	897.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.616	1	61.39	60.89	61.89	-0.22663								0	0	0	0.29326	1	7106	7106		68.787	2.3575	1				88124	6262	61309	61410	97911	97911					0.039134983804160584
VTAATQFTI	9	Unmodified	_VTAATQFTI_					0	0	0			REV__ENSG00000078081|ENST00000265598|LAMP3	REV__ENSG00000078081|ENST00000265598|LAMP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.262939453125	2	476.260925	950.507297	0.76422	0.00036397	-0.69856	-0.0003327	0.065665	3.1274E-05	476.26046003073134	42.845	1.0264	42.845	42.087	43.113	0					52	28	5	0	0	0	0.37611	1	3971	3971		67.494	10.773	1	1594800	+		88125	20603	61310	61411	97912	97912					0.030063651776117695
VTACSITSVL	10	Unmodified	_VTACSITSVL_					0	0	0		ENSG00000223443|ENST00000333796|USP17L2;ENSG00000237038|ENST00000527080|USP17L8	ENSG00000223443|ENST00000333796|USP17L2	ENSG00000223443|ENST00000333796|USP17L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2685241699219	2	497.267893	992.521233	-0.33806	-0.00016811	0.80775	0.00040167	0.46969	0.00023356	497.2682640817893	35.201	1.1879	35.245	34.512	35.699	0.04406					114	30	5	0	0	0	0.79525	1	2605	2605		60.972	3.1607	1	12692000			88126	10637	61311	61412	97913	97913					0.024672746143892255
VTAEQLLRRRR	11	Unmodified	_VTAEQLLRRRR_					0	0	0			REV__ENST00000344626.8_3_19:11071760-11094916:+|nuORF	REV__ENST00000344626.8_3_19:11071760-11094916:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6216735839844	3	466.619781	1396.83751	0.15231	7.1069E-05	3.4899	0.0016284	3.6422	0.0016995	466.62143840072247	46.584	0.71166	46.487	46.259	46.971	-0.096649					84	19	6	0	0	0	1.0532	1	4516	4516		24.232	7.0651	1	42650000	+		88127	30685	61312	61413	97914	97914					0.15496828896925763
VTAGAHRLW	9	Unmodified	_VTAGAHRLW_					0	0	0		nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.77978515625	2	505.780151	1009.54575	-1.0973	-0.000555	0.89901	0.0004547	-0.19831	-0.0001003	505.78045509569006	38.592	0.64464	38.413	38.203	38.848	-0.17929					47	17	4	0	0	0	0.091713	2	3206	3206;3218		113.41	46.982	1	1721100			88128	5802	61313	61414	97915;97916	97915					0.04135715602797063
VTAGAHRLW	9	Unmodified	_VTAGAHRLW_					0	0	0		nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7800598144531	2	505.780151	1009.54575	-0.81949	-0.00041448	0.47973	0.00024264	-0.33977	-0.00017185	505.7802787351372	38.633	0.56998	38.411	38.187	38.757	-0.22149					51	14	5	0	0	0	0.14024	2	3208	3198;3208		101.6	40.345	1	1893700			88129	5802	61313	61414	97917;97918	97918					0.04135715602797063
VTAGAHRLW	9	Unmodified	_VTAGAHRLW_					0	0	0		nc|ENSG00000145284|Q86SK9-2|SCD5;ENSG00000145284|ENST00000319540|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	nc|ENSG00000145284|Q86SK9-2|SCD5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.7802429199219	2	505.780151	1009.54575	-0.36967	-0.00018697	-0.0032192	-1.6282E-06	-0.37289	-0.0001886	505.7799804876244	38.645	0.55972	38.42	38.177	38.737	-0.22516					42	14	4	0	0	0	0.091713	2	3202	3192;3202		113.41	47.946	1	1866100			88130	5802	61313	61414	97919;97920	97920					0.04135715602797063
VTAGPARSP	9	Unmodified	_VTAGPARSP_					0	0	0		ENST00000457782.5_1_3:48298351-48298444:+|nuORF	ENST00000457782.5_1_3:48298351-48298444:+|nuORF	ENST00000457782.5_1_3:48298351-48298444:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	428.2369689941406	2	428.237784	854.461016	-1.3956	-0.00059765	1.5208	0.00065125	0.12515	5.3592E-05	428.23831273148	30.091	1.3111	30.091	29.692	31.003	0					71	31	4	0	0	0	0.33245	1	1911	1911		71.296	10.324	1	1173400			88131	14616	61314	61415	97921	97921					0.027963450661900424
VTAGPARSP	9	Unmodified	_VTAGPARSP_					0	0	0		ENST00000457782.5_1_3:48298351-48298444:+|nuORF	ENST00000457782.5_1_3:48298351-48298444:+|nuORF	ENST00000457782.5_1_3:48298351-48298444:+|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	428.237784	854.461016	-0.57765	-0.00024737	0.75769	0.00032447	0.18004	7.7099E-05	428.2379963888757	30.024	1.2759	30.033	29.677	30.953	0.0086708	0.061441	-0.00021874	NaN	71.296	48	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1201900			88132	14616	61314	61415							0.027963450661900424
VTAGVPLVF	9	Unmodified	_VTAGVPLVF_					0	0	0			REV__ENSG00000105143|ENST00000594383|SLC1A6	REV__ENSG00000105143|ENST00000594383|SLC1A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	452.24542236328125	2	451.770929	901.527304	-0.048794	-2.2044E-05	-4.1187	-0.0018607	-4.1675	-0.0018827	451.768916826056	20.004	0.73358	20.004	19.735	20.468	0					28	14	3	0	0	0	0.024466	1	506	506		18.324	0	1	212530	+		88133	21497	61315	61416	97922	97922					0.07260160908231228
VTAIISLLAD	10	Unmodified	_VTAIISLLAD_					0	0	0			REV__ENST00000515876.5_1_4:941527-949679:+|nuORF	REV__ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.292724609375	2	508.305332	1014.59611	-0.46121	-0.00023443	4.4107	0.002242	3.9495	0.0020075	508.3067499064335	64.819	0.19491	64.584	64.452	64.647	-0.2345					5	4	2	0	0	0	0.03519	1	7365	7365		84.916	0	1	49511	+		88134	22930	61316	61417	97923	97923					0.08939780417279053
VTAIRALPLV	10	Unmodified	_VTAIRALPLV_					0	0	0			REV__nc|ENSG00000165949|P40305-1|IFI27	REV__nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8450927734375	2	526.844959	1051.67537	-0.75755	-0.00039911	-0.043961	-2.3161E-05	-0.80151	-0.00042227	526.8450186468152	55.518	1.1772	55.616	55.22	56.397	0.098015					94	29	5	0	0	0	0.74632	1	6086	6086		64.207	0	1	3488000	+		88135	25948	61317	61418	97924	97924					0.15159472162054044
VTALAARTW	9	Unmodified	_VTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7831115722656	2	494.782359	987.550165	-0.11225	-5.5538E-05	0.18739	9.2719E-05	0.075146	3.7181E-05	494.7818342331837	50.068	1.0817	49.962	49.449	50.531	-0.10558					74	28	4	0	0	0	0.013946	4	5090	5046;5064;5076;5090		209.19	79.806	1	4116400			88136	18268	61318	61419	97925;97926;97927;97928	97928					0.05589180025708629
VTALAARTW	9	Unmodified	_VTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.78271484375	2	494.782359	987.550165	0.10353	5.1223E-05	0.083593	4.136E-05	0.18712	9.2584E-05	494.7817600266549	50.277	1.2271	49.997	49.434	50.661	-0.27977					78	32	5	0	0	0	0.013337	3	5111	5071;5097;5111		181.41	63.033	1	4539100			88137	18268	61318	61419	97929;97930;97931	97931					0.05589180025708629
VTALAARTW	9	Unmodified	_VTALAARTW_					0	0	0		nc|ENSG00000130770|Q9UII2-2|ATP5IF1;nc|ENSG00000130770|Q9UII2-3|ATP5IF1;ENSG00000130770|ENST00000335514|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	nc|ENSG00000130770|Q9UII2-2|ATP5IF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	494.7817687988281	2	494.782359	987.550165	0.34262	0.00016952	0.28703	0.00014202	0.62965	0.00031154	494.7820902295903	50.141	0.85638	49.96	49.57	50.426	-0.18071					70	22	5	0	0	0	0.013946	2	5076	5076;5087		195.05	81.634	1	4320300			88138	18268	61318	61419	97932;97933	97932					0.05589180025708629
VTALHVLPE	9	Unmodified	_VTALHVLPE_					0	0	0		nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	nc|ENSG00000129566|Q99973-2|TEP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.25830078125	2	489.784567	977.554582	-0.59611	-0.00029197	0.57344	0.00028086	-0.022673	-1.1105E-05	489.78500656972625	69.776	0.60732	69.789	69.385	69.993	0.012421					34	14	3	0	0	0	0.024506	1	8348	8348		16.473	0	1	255880			88139	4358	61319	61420	97934	97934					0.06490644448615512
VTALLLIIL	9	Unmodified	_VTALLLIIL_					0	0	0		ENST00000467411.5_1_2:174223518-174228029:+|nuORF	ENST00000467411.5_1_2:174223518-174228029:+|nuORF	ENST00000467411.5_1_2:174223518-174228029:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	485.2716064453125	2	484.841354	967.668155	-0.096334	-4.6706E-05	-2.9539	-0.0014322	-3.0503	-0.0014789	484.8399751705068	33.172	0.32287	32.971	32.771	33.094	-0.20019					10	7	2	0	0	0	0.024325	1	2313	2313		31.955	6.5047	1	43958			88140	14836	61320	61421	97935	97935					0.18302739561670478
VTALQQSSL	9	Unmodified	_VTALQQSSL_					0	0	0			REV__NBEAL1|p.L1801V|1|0.3|ENSG00000144426|chr2:203151490-203151490|C/G|missense_variant	REV__NBEAL1|p.L1801V|1|0.3|ENSG00000144426|chr2:203151490-203151490|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	473.76385498046875	2	473.763832	945.513111	0.14963	7.0891E-05	-0.23158	-0.00010971	-0.081948	-3.8824E-05	473.7636618103125	35.075	0.63607	35.075	34.706	35.343	0					30	16	2	0	0	0	0.23085	1	2666	2666		84.916	2.6105	1	3494400	+		88141	36420	61321	61422	97936	97936					0.03817463689279066
VTALRRTL	8	Unmodified	_VTALRRTL_					0	0	0			REV__nc|ENSG00000053524|Q86YR7-3|MCF2L2	REV__nc|ENSG00000053524|Q86YR7-3|MCF2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.25634765625	2	465.298176	928.581799	0.5051	0.00023502	3.8643	0.0017981	4.3694	0.0020331	465.2997974125551	59.793	0.51447	59.592	59.281	59.795	-0.20016					20	13	2	0	0	0	0.027866	1	6773	6773		51.193	3.5354	1	99318	+		88142	20181	61322	61423	97937	97937					0.1146517277966268
VTALRRTL	8	Unmodified	_VTALRRTL_					0	0	0			REV__nc|ENSG00000053524|Q86YR7-3|MCF2L2	REV__nc|ENSG00000053524|Q86YR7-3|MCF2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.256103515625	2	465.298176	928.581799	0.79009	0.00036763	3.5933	0.001672	4.3834	0.0020396	465.2997110413761	59.445	0.48349	59.531	59.314	59.798	0.085686					19	12	2	0	0	0	0.027866	1	6683	6683		42.864	6.4175	1	120310	+		88143	20181	61322	61423	97938	97938					0.1146517277966268
VTALVSLK	8	Unmodified	_VTALVSLK_					0	0	0		nc|ENSG00000107949|Q9P287-2|BCCIP	nc|ENSG00000107949|Q9P287-2|BCCIP	nc|ENSG00000107949|Q9P287-2|BCCIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.7093200683594	2	415.770929	829.527304	-0.31913	-0.00013268	0.0099131	4.1216E-06	-0.30921	-0.00012856	415.7708068607162	26.365	0.53092	26.197	26.019	26.55	-0.16816					20	13	2	0	0	0	0.027866	1	1337	1337		27.882	0	1	158900			88144	18162	61323	61424	97939	97939					0.10572160908236583
VTAMAVVYVL	10	Unmodified	_VTAMAVVYVL_					0	0	0		ENSG00000275663|ENST00000611444|H4C7	ENSG00000275663|ENST00000611444|H4C7	ENSG00000275663|ENST00000611444|H4C7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7925415039062	2	533.304278	1064.594	-0.76626	-0.00040865	3.83	0.0020426	3.0637	0.0016339	533.3064107237036	45.09	0.60712	44.879	44.514	45.121	-0.21109					26	15	3	0	0	0	0.03519	1	4201	4201		21.96	0	1	757840			88145	11041	61324	61425	97940	97940					0.06429028407842452
VTAMSAPGGI	10	Unmodified	_VTAMSAPGGI_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2893981933594	2	452.233853	902.453153	-0.80538	-0.00036422	0.81366	0.00036796	0.0082761	3.7427E-06	452.23403677388995	55.519	0.77861	55.617	55.116	55.894	0.098015					36	20	2	0	0	0	0.03519	1	6097	6097		24.203	6.8378	1	390160	+		88146	24948	61325	61426	97941	97941					-0.001975502455820788
VTAPPLDL	8	Unmodified	_VTAPPLDL_					0	0	0			REV__ENSG00000164050|ENST00000296440|PLXNB1	REV__ENSG00000164050|ENST00000296440|PLXNB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	412.7131042480469	2	413.239461	824.46437	-0.27661	-0.00011431	-2.1254	-0.0008783	-2.402	-0.00099261	413.2385181984794	73.849	1.3448	73.585	72.343	73.687	-0.26479					46	32	3	0	0	0	0.027866	1	8624	8624		17.365	3.5896	1	190960	+		88147	25678	61326	61427	97942	97942					0.04511595120197853
VTAQCPSTTTL	11	Unmodified	_VTAQCPSTTTL_					0	0	0			REV__ENST00000520366.1_1_6:74189800-74190421:+|nuORF	REV__ENST00000520366.1_1_6:74189800-74190421:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	561.2797241210938	2	561.278989	1120.54342	0.77864	0.00043704	-0.89368	-0.0005016	-0.11503	-6.4565E-05	561.2785607602308	84.916	3.9697	84.758	84.321	88.291	-0.15869					302	94	5	0	0	0	0.94988	1	10470	10470		47.96	0	1	51030000	+		88148	34292	61327	61428	97943	97943					-0.012025457078379986
VTARLVGVLW	10	Unmodified	_VTARLVGVLW_					0	0	0		ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.343017578125	2	557.342584	1112.67061	-0.11476	-6.3961E-05	0.77604	0.00043252	0.66127	0.00036856	557.3429446630656	73.981	0.90208	73.705	73.405	74.307	-0.2769					55	25	3	0	0	0	0.56936	3	8718	8709;8718;8735		80.455	23.822	1	3768100			88149	6960	61328	61429	97944;97945;97946	97945					0.11878588019317249
VTARLVGVLW	10	Unmodified	_VTARLVGVLW_					0	0	0		ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.3436889648438	2	557.342584	1112.67061	-0.057665	-3.2139E-05	0.72613	0.00040471	0.66847	0.00037257	557.3428194038614	73.961	1.0389	73.696	73.406	74.445	-0.26479					56	26	3	0	0	0	0.24462	4	8728	8706;8718;8728;8736		115.49	24.121	1	3257900			88150	6960	61328	61429	97947;97948;97949;97950	97949					0.11878588019317249
VTARLVGVLW	10	Unmodified	_VTARLVGVLW_					0	0	0		ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	ENSG00000162604|ENST00000606498|TM2D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	557.3435668945312	2	557.342584	1112.67061	-0.14317	-7.9792E-05	0.20911	0.00011654	0.065941	3.6752E-05	557.3425929637456	73.785	0.51419	73.595	73.276	73.791	-0.19027					40	13	4	0	0	0	0.17599	3	8679	8668;8679;8691		124.08	27.415	1	4575200			88151	6960	61328	61429	97951;97952;97953	97952					0.11878588019317249
VTARQLVE	8	Unmodified	_VTARQLVE_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	459.2637939453125	2	458.266542	914.51853	-0.14457	-6.6253E-05	-0.44928	-0.00020589	-0.59386	-0.00027214	458.2660614207375	41.972	0.5622	41.84	41.455	42.017	-0.13219					22	15	2	0	0	0	0.027866	1	3827	3827		37.159	0	1	242010			88152	18383	61329	61430	97954	97954					0.05785187271760606
VTASARTKP	9	Unmodified	_VTASARTKP_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.7541809082031	2	465.771991	929.529429	0.63334	0.00029499	-2.8439	-0.0013246	-2.2106	-0.0010296	465.7708850686597	37.476	0.48243	37.508	37.339	37.822	0.032269					17	12	3	0	0	0	0.024374	1	3019	3019		32.812	13.709	1	173180			88153	10517	61330	61431	97955	97955					0.061845896460340555
VTASARTKP	9	Unmodified	_VTASARTKP_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	465.771991	929.529429	-0.98312	-0.00045791	0.95996	0.00044712	-0.023165	-1.0789E-05	465.77246873137926	37.582	0.19882	37.363	37.192	37.39	-0.2195	-0.0064417	0.0013605	NaN	32.812	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75192			88154	10517	61330	61431							0.061845896460340555
VTASARTKP	9	Unmodified	_VTASARTKP_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	465.771991	929.529429	-0.89473	-0.00041674	1.9578	0.00091187	1.063	0.00049513	465.77311716680066	37.507	0.28054	37.297	37.153	37.434	-0.2092	-0.071801	0.00229	NaN	32.812	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40550			88155	10517	61330	61431							0.061845896460340555
VTASGFPVIL	10	Unmodified	_VTASGFPVIL_					0	0	0		ENSG00000049860|ENST00000261416|HEXB;ENST00000504459.5_1_5:74009375-74016573:+|nuORF	ENSG00000049860|ENST00000261416|HEXB	ENSG00000049860|ENST00000261416|HEXB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.2746887207031	2	502.294768	1002.57498	-0.30748	-0.00015445	-4.1938	-0.0021065	-4.5013	-0.002261	502.2926119219228	49.309	0.58083	49.156	48.9	49.481	-0.15276					28	15	3	0	0	0	0.03519	1	5045	5045		29.15	0	1	397660			88156	1135	61331	61432	97956	97956					0.07379815108436105
VTAVDLVKL	9	Unmodified	_VTAVDLVKL_					0	0	0			REV__ENST00000228495.10_1_12:109886482-109886551:-|nuORF	REV__ENST00000228495.10_1_12:109886482-109886551:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.2782897949219	2	479.302593	956.590633	-0.66414	-0.00031833	-0.32389	-0.00015524	-0.98804	-0.00047357	479.30223383245766	84.038	0.56428	83.966	83.614	84.178	-0.072769					16	12	2	0	0	0	0.024025	1	10449	10449		71.877	29.481	1	60310	+		88157	29391	61332	61433	97957	97957					0.11060101625469088
VTAVDTKRGV	10	Unmodified	_VTAVDTKRGV_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;ENST00000591635.5_1_18:34124550-34298500:+|nuORF;ENST00000589114.5_1_18:33877702-34289359:+|nuORF	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	523.303466796875	2	523.303655	1044.59276	-0.30343	-0.00015878	-0.91784	-0.00048031	-1.2213	-0.00063909	523.3028407317955	86.983	2.973	86.983	86.171	89.144	0					260	70	4	0	0	0	1.0344	1	11126	11126		41.427	0.64845	1	11993000			88158	4828	61333	61434	97958	97958					0.07224530363305348
VTAVDTKRGV	10	Unmodified	_VTAVDTKRGV_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;ENST00000591635.5_1_18:34124550-34298500:+|nuORF;ENST00000589114.5_1_18:33877702-34289359:+|nuORF	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.303466796875	2	523.303655	1044.59276	0.49835	0.00026079	-2.0318	-0.0010633	-1.5335	-0.00080247	523.3022239220064	86.959	3.1464	86.98	86.287	89.433	0.021263					275	74	4	0	0	0	1.0344	1	11033	11033		41.427	0.64845	1	11897000			88159	4828	61333	61434	97959	97959					0.07224530363305348
VTAVDTKRGV	10	Unmodified	_VTAVDTKRGV_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;ENST00000591635.5_1_18:34124550-34298500:+|nuORF;ENST00000589114.5_1_18:33877702-34289359:+|nuORF	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3037719726562	2	523.303655	1044.59276	-0.39587	-0.00020716	-0.06527	-3.4156E-05	-0.46114	-0.00024131	523.3034528281252	87.405	3.4515	87.227	86.306	89.757	-0.17875					329	82	5	0	0	0	0.96822	3	10736	10736;10748;10783		49.536	11.725	1	14072000			88160	4828	61333	61434	97960;97961;97962	97960					0.07224530363305348
VTAVDTKRGV	10	Unmodified	_VTAVDTKRGV_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;ENST00000591635.5_1_18:34124550-34298500:+|nuORF;ENST00000589114.5_1_18:33877702-34289359:+|nuORF	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.3035888671875	2	523.303655	1044.59276	0.47324	0.00024765	-0.96385	-0.00050438	-0.49061	-0.00025674	523.3029595125636	87.32	3.0351	87.184	86.284	89.319	-0.13613					323	72	5	0	0	0	0.96822	1	10745	10745		49.536	13.918	1	13836000			88161	4828	61333	61434	97963	97963					0.07224530363305348
VTCATEVGVY	10	Unmodified	_VTCATEVGVY_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.2503051757812	2	521.2497	1040.48485	0.18302	9.54E-05	0.036354	1.8949E-05	0.21938	0.00011435	521.2495466515932	71.868	1.1018	71.662	71.344	72.446	-0.20614					72	26	4	0	0	0	1.1166	1	8382	8382		30.504	1.3541	1	4215900			88162	4420	61334	61435	97964	97964					-0.033776022823076346
VTCPARLPR	9	Unmodified	_VTCPARLPR_					0	0	0			REV__ENST00000449707.5_1_2:219507052-219507328:-|nuORF	REV__ENST00000449707.5_1_2:219507052-219507328:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.3074951171875	2	506.789661	1011.56477	-0.20877	-0.0001058	1.6743	0.00084851	1.4655	0.00074271	507.2895951403817	43.409	0.42759	43.296	43.109	43.536	-0.11253					15	10	2	0	0	0	0.024374	1	3988	3988		40.778	6.6056	1	416550	+		88163	32683	61335	61436	97965	97965					0.05944928902204083
VTCQHLPQP	9	Unmodified	_VTCQHLPQP_					0	0	0		nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-1|EPN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.78448486328125	2	511.758027	1021.5015	0.91805	0.00046982	-3.4762	-0.001779	-2.5582	-0.0013092	511.7558395326969	59.524	0.58887	59.524	59.257	59.846	0					22	15	2	0	0	0	0.024292	1	6771	6771		58.782	14.665	1	375750			88164	18060	61336	61437	97966	97966					-0.008390566057073556
VTCSSTISGLV	11	Unmodified	_VTCSSTISGLV_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.774169921875	2	533.776082	1065.53761	-0.16979	-9.063E-05	-2.5278	-0.0013493	-2.6976	-0.0014399	533.7746245646101	50.998	1.097	50.721	50.443	51.54	-0.27643					56	28	3	0	0	0	0.95882	1	5226	5226		45.972	3.108	1	2809100	+		88165	20465	61337	61438	97967	97967					0.007463557805067467
VTCYITEGDPL	11	Unmodified	_VTCYITEGDPL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.55987548828125	3	404.193523	1209.55874	-1.3161	-0.00053194	-2.6943	-0.001089	-4.0103	-0.001621	404.19288294999313	33.461	0.43856	33.295	33.117	33.555	-0.16565					16	10	2	0	0	0	0.024742	1	2349	2349		53.597	18.419	1	79003			88166	1818;17643	61338	61439	97968	97968					-0.03765678910644965
VTDAAHLLI	9	Unmodified	_VTDAAHLLI_					0	0	0		nc|ENSG00000164756|Q8IWU4-2|SLC30A8;ENSG00000164756|ENST00000456015|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.7627868652344	2	476.776742	951.538931	1.2227	0.00058296	-0.85839	-0.00040926	0.36432	0.0001737	476.7762382237513	72.275	0.67403	72.275	71.94	72.614	0					27	16	2	0	0	0	0.024325	1	8752	8752		40.573	0	1	329820			88167	7319	61339	61440	97969	97969					0.06122357931565148
VTDAAHLLI	9	Unmodified	_VTDAAHLLI_					0	0	0		nc|ENSG00000164756|Q8IWU4-2|SLC30A8;ENSG00000164756|ENST00000456015|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.776742	951.538931	1.1346	0.00054096	-0.91821	-0.00043778	0.21641	0.00010318	476.77613157595044	72.653	0.568	72.372	72.1	72.668	-0.28124	0.044678	9.844E-05	NaN	31.955	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300370			88168	7319	61339	61440							0.06122357931565148
VTDAAHLLI	9	Unmodified	_VTDAAHLLI_					0	0	0		nc|ENSG00000164756|Q8IWU4-2|SLC30A8;ENSG00000164756|ENST00000456015|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	476.776742	951.538931	0.86169	0.00041083	-1.1876	-0.00056622	-0.32592	-0.00015539	476.7761076903543	72.325	0.6702	72.335	72.023	72.693	0.0097733	0.0074463	-0.00015845	NaN	31.955	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280850			88169	7319	61339	61440							0.06122357931565148
VTDALKAVL	9	Unmodified	_VTDALKAVL_					0	0	0			REV__ENSG00000187862|ENST00000368236|TTC24	REV__ENSG00000187862|ENST00000368236|TTC24	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.77740478515625	2	465.286943	928.559333	-0.012605	-5.8648E-06	0.29011	0.00013498	0.2775	0.00012912	465.2871019318616	80.308	0.54926	80.329	80.063	80.612	0.021439					19	12	2	0	0	0	0.024319	1	9935	9935		31.53	10.583	1	96539	+		88170	27987	61340	61441	97970	97970					0.09219528591370363
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65655295-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.28173828125	2	472.282192	942.549831	1.123	0.00053038	-1.2754	-0.00060233	-0.15236	-7.1957E-05	472.28144858365187	51.246	0.57911	51.134	50.859	51.438	-0.11163					44	14	4	0	0	0	0.086035	2	5263	5251;5263		115.49	30.333	1	1958500			88171	8284	61341	61442	97971;97972	97972					0.0762576030585933
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65655295-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2818603515625	2	472.282192	942.549831	-0.51082	-0.00024125	0.29333	0.00013853	-0.21749	-0.00010272	472.28221153163935	51.486	0.61121	51.209	50.929	51.54	-0.27643					50	15	4	0	0	0	0.12914	2	5275	5275;5285		104.06	16.302	1	1954900			88172	8284	61341	61442	97973;97974	97973					0.0762576030585933
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65655295-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000528937.1_1_11:65654989-65655958:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.28192138671875	2	472.282192	942.549831	0.88194	0.00041652	-1.1529	-0.00054452	-0.27101	-0.00012799	472.28150303486666	51.357	0.76683	51.177	50.87	51.637	-0.18071					45	19	3	0	0	0	0.17845	1	5262	5262		93.143	15.826	1	1492100			88173	8284	61341	61442	97975	97975					0.0762576030585933
VTDEDSMIYEG	11	Unmodified	_VTDEDSMIYEG_					0	0	0		ENST00000488487.2_1_6:3127447-3138314:+|nuORF;nc|ENSG00000137274|Q86WA6-2|BPHL;ENST00000490918.5_1_6:3118974-3138432:+|nuORF;ENSG00000137274|ENST00000380379|BPHL	ENST00000488487.2_1_6:3127447-3138314:+|nuORF	ENST00000488487.2_1_6:3127447-3138314:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	629.788330078125	2	629.760826	1257.5071	-0.13611	-8.5717E-05	2.6694	0.0016811	2.5333	0.0015954	629.7630974463982	83.352	0.17409	83.214	83.081	83.255	-0.1386					5	3	2	0	0	0	0.024756	1	10044	10044		52.937	12.159	1	20637			88174	5110	61342	61443	97976	97976					-0.11135467395206433
VTDFPYSVL	9	Unmodified	_VTDFPYSVL_					0	0	0			REV__ENST00000491736.1_1_4:186066902-186068122:+|nuORF	REV__ENST00000491736.1_1_4:186066902-186068122:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7666015625	2	520.768583	1039.52261	-0.22166	-0.00011544	-4.3465	-0.0022635	-4.5681	-0.0023789	520.7662782590676	47.647	4.0898	47.494	46.698	50.788	-0.153					259	116	4	0	0	0	0.25032	2	4789	4753;4789		82.305	18.771	1	67190000	+		88175	24792	61343	61444	97977;97978	97978					0.004432319748275404
VTDGAILGKLY	11	Unmodified	_VTDGAILGKLY_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.3294067382812	2	575.329339	1148.64412	-0.44577	-0.00025647	0.21685	0.00012476	-0.22892	-0.00013171	575.329303950618	64.818	1.04	64.583	64.256	65.296	-0.2345					61	25	4	0	0	0	0.17798	2	7370	7370;7381		101.46	30.167	1	3419900			88176	1189	61344	61445	97979;97980	97979					0.0757485433734928
VTDGAILGKLY	11	Unmodified	_VTDGAILGKLY_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.3287353515625	2	575.329339	1148.64412	-0.93793	-0.00053962	0.7373	0.00042419	-0.20063	-0.00011543	575.3296183138518	64.813	0.80312	64.611	64.301	65.104	-0.20254					61	19	5	0	0	0	0.0030965	2	7385	7375;7385		148.69	70.426	1	3003400			88177	1189	61344	61445	97981;97982	97982					0.0757485433734928
VTDGAILGKLY	11	Unmodified	_VTDGAILGKLY_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.S3788Yfs*5|1|0.24|ENSG00000055609|chr7:152162214-152162215|-/AAGAT|frameshift_variant;KMT2C|p.S4184*|1|0.35|ENSG00000055609|chr7:152151558-152151559|-/A|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.3283081054688	2	575.329339	1148.64412	-0.72062	-0.00041459	0.25295	0.00014553	-0.46767	-0.00026907	575.3293617572001	64.86	1.0725	64.604	64.152	65.225	-0.25563					67	26	4	0	0	0	0.054856	2	7377	7367;7377		120.31	46.141	1	3404900			88178	1189	61344	61445	97983;97984	97984					0.0757485433734928
VTDGVKHSM	9	Unmodified	_VTDGVKHSM_					0	0	0		ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7647399902344	2	487.242209	972.469866	-0.3634	-0.00017706	1.4826	0.0007224	1.1192	0.00054534	487.2429135803598	20.112	1.0623	20.007	19.362	20.424	-0.10477					34	21	2	0	0	0	0.024323	1	476	476		27.882	5.9224	1	19668			88179	2665	61345	61446	97985	97985					-0.017470493596420056
VTDHLGVVYY	10	Unmodified	_VTDHLGVVYY_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.298095703125	2	583.298039	1164.58152	0.48245	0.00028141	-0.33781	-0.00019704	0.14464	8.4368E-05	583.2978612506097	59.498	0.71835	59.301	59.009	59.728	-0.19742					38	17	3	0	0	0	0.47726	1	6577	6577		90.777	36.054	1	1377400			88180	15001	61346	61447	97986	97986					0.005817082691464748
VTDHLGVVYY	10	Unmodified	_VTDHLGVVYY_					0	0	0		ENST00000473051.1_1_10:74095570-74096546:-|nuORF;ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.2979736328125	2	583.298039	1164.58152	-0.24194	-0.00014113	0.66879	0.0003901	0.42684	0.00024898	583.2982305492284	59.476	1.0893	59.294	58.791	59.88	-0.18133					80	27	5	0	0	0	0.47726	1	6570	6570		90.777	37.84	1	1312500			88181	15001	61346	61447	97987	97987					0.005817082691464748
VTDLIAILL	9	Unmodified	_VTDLIAILL_					0	0	0		nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	nc|ENSG00000083067|Q9HCF6-10|TRPM3	MSMS	OPSCC_39_ClassI_Rep-3	3	485.8117370605469	2	485.812793	969.611034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.97	1	106.97	106.47	107.47	0.0018311								0	0	0	0.45465	1	13652	13652		57.811	0	1				88182	1744	61347	61448	97988	97988					0.12501272285282994
VTDLKAHLA	9	Unmodified	_VTDLKAHLA_					0	0	0			REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	REV__ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.295166015625	2	484.282192	966.549831	0.98634	0.00047767	1.2848	0.0006222	2.2711	0.0010999	484.282828241955	85.404	0.4201	85.404	85.164	85.584	0					16	9	2	0	0	0	0.022756	1	10692	10692		79.451	0	1	103120	+		88183	34348	61348	61449	97989	97989					0.06521760305849966
VTDLRLWL	8	Unmodified	_VTDLRLWL_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.3017883300781	2	508.300384	1014.58622	-0.034944	-1.7762E-05	3.1468	0.0015995	3.1118	0.0015818	508.3018933754183	55.874	1.8138	55.874	54.757	56.571	0					117	41	3	0	0	0	0.42327	1	6207	6207		94.006	8.6469	1	8817200			88184	10386	61349	61450	97990	97990					0.07950637202554844
VTDLRLWL	8	Unmodified	_VTDLRLWL_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.3020324707031	2	508.300384	1014.58622	-0.35052	-0.00017817	3.5065	0.0017824	3.156	0.0016042	508.302087445595	56.015	1.9777	55.859	54.602	56.58	-0.15601					117	42	3	0	0	0	0.44658	1	6158	6158		90.777	13.459	1	8370900			88185	10386	61349	61450	97991	97991					0.07950637202554844
VTDLSDTYSH	10	Unmodified	_VTDLSDTYSH_					0	0	0		ENST00000324288.12_1_16:11021589-11021871:+|nuORF	ENST00000324288.12_1_16:11021589-11021871:+|nuORF	ENST00000324288.12_1_16:11021589-11021871:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2779541015625	2	569.256568	1136.49858	0.16708	9.5114E-05	2.9807	0.0016968	3.1477	0.0017919	569.2582534824915	79.658	0.67117	79.508	79.195	79.866	-0.15051					28	15	2	0	0	0	0.03519	1	9530	9530		44.377	0	1	336830			88186	12253	61350	61451	97992	97992					-0.06420653249506358
VTDLSWKR	8	Unmodified	_VTDLSWKR_					0	0	0		ENST00000540167.5_1_X:117079506-117162405:-|nuORF	ENST00000540167.5_1_X:117079506-117162405:-|nuORF	ENST00000540167.5_1_X:117079506-117162405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.2926940917969	2	502.779816	1003.54508	-0.78046	-0.0003924	0.55074	0.0002769	-0.22972	-0.0001155	502.7798594264685	39.43	0.50043	39.454	39.17	39.671	0.023727					19	13	2	0	0	0	0.027866	1	3283	3283		38.806	1.647	1	168360			88187	16415	61351	61452	97993	97993					0.04344876163088429
VTDLSWKR	8	Unmodified	_VTDLSWKR_					0	0	0		ENST00000540167.5_1_X:117079506-117162405:-|nuORF	ENST00000540167.5_1_X:117079506-117162405:-|nuORF	ENST00000540167.5_1_X:117079506-117162405:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	502.779816	1003.54508	0.29239	0.00014701	-3.6494	-0.0018348	-3.357	-0.0016878	502.7780440331108	39.61	0.098236	39.61	39.562	39.661	0	0.078053	-0.0024669	NaN	38.806	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40460			88188	16415	61351	61452							0.04344876163088429
VTDMMFQVY	9	2 Oxidation (M)	_VTDM(Oxidation (M))M(Oxidation (M))FQVY_		VTDM(1)M(1)FQVY		VTDM(79)M(79)FQVY	0	0	2			REV__ENST00000361384.6_1_10:115612544-115612715:-|nuORF	REV__ENST00000361384.6_1_10:115612544-115612715:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.2489013671875	2	583.248843	1164.48313	-0.49981	-0.00029151	0.72228	0.00042127	0.22248	0.00012976	583.249059838832	80.161	1.2383	80.015	79.701	80.939	-0.146					63	29	4	0	0	0	0.27161	1	9602	9602		79.451	9.8234	1	2119600	+		88189	30941	61352	61453	97994	97994		871;872			-0.0925297936255447
VTDNAVYHW	9	Unmodified	_VTDNAVYHW_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.7593994140625	2	552.759081	1103.50361	-0.53608	-0.00029633	0.32242	0.00017822	-0.21366	-0.0001181	552.7592583304832	52.063	1.3455	51.944	51.575	52.921	-0.11876					103	34	4	0	0	0	0.0089939	5	5380	5370;5380;5392;5404;5416		237.81	158.36	1	16868000			88190	456	61353	61454	97995;97996;97997;97998;97999	97996					-0.04400304596265414
VTDNAVYHW	9	Unmodified	_VTDNAVYHW_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.759521484375	2	552.759081	1103.50361	-1.4335	-0.00079237	1.1647	0.00064382	-0.26874	-0.00014855	552.7597198124529	52.345	1.6689	52.076	51.691	53.36	-0.26903					96	43	4	0	0	0	0.0085264	6	5409	5399;5409;5421;5433;5445;5458		255.13	157.36	1	17765000			88191	456	61353	61454	98000;98001;98002;98003;98004;98005	98001					-0.04400304596265414
VTDNAVYHW	9	Unmodified	_VTDNAVYHW_					0	0	0		CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;CLTC-VMP1|8|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC|p.K500Rfs*22|1|0.09|ENSG00000141367|chr17:59663971-59663972|-/GGAAAAAG|frameshift_variant;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|23|fusion	CLTC-VMP1|9|fusion	CLTC-VMP1|9|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	552.7593383789062	2	552.759081	1103.50361	-0.069202	-3.8252E-05	-0.31267	-0.00017283	-0.38187	-0.00021108	552.7589053924241	52.134	1.4645	51.95	51.598	53.063	-0.18404					111	37	4	0	0	0	0.0085264	6	5370	5370;5380;5392;5404;5416;5428		255.13	149.81	1	16991000			88192	456	61353	61454	98006;98007;98008;98009;98010;98011	98006					-0.04400304596265414
VTDNQPNL	8	Unmodified	_VTDNQPNL_					0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2688293457031	2	450.724707	899.43486	-0.10842	-4.8869E-05	-4.2304	-0.0019067	-4.3388	-0.0019556	450.7227191980303	49.149	0.2821	48.997	48.829	49.111	-0.15277					10	7	2	0	0	0	0.027866	1	5039	5039		37.159	0	1	75184	+		88193	21731	61354	61455	98012	98012					-0.01887968895960057
VTDNRAFGY	9	Unmodified	_VTDNRAFGY_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.N396Kfs*31|1|0.08|ENSG00000153071|chr5:39382771-39382772|-/T|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.751220703125	2	521.751256	1041.48796	-0.33823	-0.00017647	-0.039622	-2.0673E-05	-0.37785	-0.00019714	521.7511398903742	42.029	0.59145	41.906	41.603	42.195	-0.12299					42	15	4	0	0	0	0.015901	3	3767	3756;3767;3782		157.33	77.39	1	4894000			88194	6317	61355	61456	98013;98014;98015	98014					-0.031125911132676265
VTDNRAFGY	9	Unmodified	_VTDNRAFGY_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.N396Kfs*31|1|0.08|ENSG00000153071|chr5:39382771-39382772|-/T|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	521.750732421875	2	521.751256	1041.48796	-0.22672	-0.00011829	1.8225	0.00095087	1.5957	0.00083258	521.7510910387541	42.186	0.98921	41.954	41.695	42.684	-0.23186					59	26	4	0	0	0	0.03201	3	3774	3774;3786;3799		139.97	70.737	1	4778300			88195	6317	61355	61456	98016;98017;98018	98016					-0.031125911132676265
VTDNRAFGY	9	Unmodified	_VTDNRAFGY_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.N396Kfs*31|1|0.08|ENSG00000153071|chr5:39382771-39382772|-/T|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	521.7512817382812	2	521.751256	1041.48796	-0.096031	-5.0104E-05	-0.48928	-0.00025528	-0.58531	-0.00030539	521.7509056421449	42.224	0.68132	41.994	41.688	42.37	-0.23029					43	18	3	0	0	0	0.043667	2	3779	3779;3790		131.03	59.653	1	4748100			88196	6317	61355	61456	98019;98020	98019					-0.031125911132676265
VTDPKADPRA	10	Unmodified	_VTDPKADPRA_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.2608032226562	2	535.285463	1068.55637	-0.5451	-0.00029179	-2.7088	-0.00145	-3.2539	-0.0017418	535.2838956243415	24.26	0.28918	24.085	24.007	24.296	-0.17484					8	6	2	0	0	0	0.03519	1	1041	1041		69.628	28.201	1	93070			88197	1175	61356	61457	98021	98021					0.024836534665837462
VTDPLLSS	8	Unmodified	_VTDPLLSS_					0	0	0		nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-5|MITF;nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-2|MITF;ENSG00000187098|ENST00000352241|MITF	nc|ENSG00000187098|O75030-6|MITF	nc|ENSG00000187098|O75030-6|MITF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2399597167969	2	416.226551	830.438549	-0.27201	-0.00011322	4.1952	0.0017461	3.9232	0.0016329	416.22857647945995	41.57	1.3042	41.435	41.137	42.441	-0.13554					84	34	5	0	0	0	0.027866	1	3688	3688		25.45	0	1	5055500			88198	18600	61357	61458	98022	98022					0.01654700877918458
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.7748413085938	2	576.774593	1151.53463	-0.25056	-0.00014452	0.25785	0.00014872	0.0072863	4.2025E-06	576.7745436521105	56.496	1.0794	56.329	55.922	57.001	-0.1672					86	27	5	0	0	0	0.01976	3	6102	6102;6114;6126		163.15	69.145	1	2408800			88199	9951	61358	61459	98023;98024;98025	98023					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7745361328125	2	576.774593	1151.53463	-0.12911	-7.4468E-05	0.28311	0.00016329	0.154	8.8824E-05	576.7745826988983	56.589	0.91889	56.387	55.972	56.891	-0.20208					76	23	4	0	0	0	0.0011496	3	6125	6125;6136;6151		190.62	87.849	1	2893300			88200	9951	61358	61459	98026;98027;98028	98026					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7738647460938	2	576.774593	1151.53463	-0.11959	-6.8979E-05	0.22828	0.00013167	0.10868	6.2687E-05	576.7744810254335	56.621	1.2189	56.396	55.99	57.209	-0.2248					83	31	5	0	0	0	0.031334	3	6131	6120;6131;6144		154.12	71.813	1	2824300			88201	9951	61358	61459	98029;98030;98031	98030					-0.03507196072655461
VTDPSTLEQY	10	Unmodified	_VTDPSTLEQY_					0	0	0		ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	ENSG00000197081|ENST00000356956|IGF2R	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.774593	1151.53463	-0.86129	-0.00049677	-0.18911	-0.00010908	-1.0504	-0.00060585	576.776043516732	56.356	0.11313	56.454	56.397	56.51	0.097893	0.062492	-0.00048226	NaN	190.62	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35581			88202	9951	61358	61459							-0.03507196072655461
VTDQASHIY	9	Unmodified	_VTDQASHIY_					0	0	0		ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.25048828125	2	517.251089	1032.48762	-0.73983	-0.00038268	0.80752	0.00041769	0.067694	3.5015E-05	517.2512322361176	36.105	0.87341	35.9	35.651	36.525	-0.20518					41	23	3	0	0	0	0.018505	1	2804	2804		211.39	85.575	1	2314200			88203	15905	61359	61460	98032	98032					-0.027320108331196025
VTDQASHIY	9	Unmodified	_VTDQASHIY_					0	0	0		ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.2509765625	2	517.251089	1032.48762	0.18566	9.6031E-05	0.034896	1.805E-05	0.22055	0.00011408	517.2508386929974	36.099	0.64649	35.883	35.68	36.326	-0.21661					48	17	4	0	0	0	0.016584	2	2809	2797;2809		205.58	70.771	1	2017800			88204	15905	61359	61460	98033;98034	98034					-0.027320108331196025
VTDQASHIY	9	Unmodified	_VTDQASHIY_					0	0	0		ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	ENST00000515608.5_1_8:6484738-6484828:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.2507934570312	2	517.251089	1032.48762	0.72753	0.00037631	-0.77835	-0.0004026	-0.050819	-2.6286E-05	517.2504625676227	36.011	0.70878	35.813	35.542	36.251	-0.19829					50	19	4	0	0	0	0.018505	1	2785	2785		211.39	72.563	1	2226600			88205	15905	61359	61460	98035	98035					-0.027320108331196025
VTDRKWGWIYE	11	Unmodified	_VTDRKWGWIYE_					0	0	0			REV__ENST00000469753.5_1_2:46300785-46301094:+|nuORF	REV__ENST00000469753.5_1_2:46300785-46301094:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7982482910156	3	484.91386	1451.71975	-0.13459	-6.5267E-05	-3.741	-0.0018141	-3.8756	-0.0018793	484.91200616203383	59.286	0.77038	59.372	59.099	59.869	0.085682					62	20	5	0	0	0	0.024779	1	6665	6665		27.644	9.1129	1	2480100	+		88206	33132	61360	61461	98036	98036					0.01195831517611623
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.8932189941406	3	441.893236	1322.65788	-0.28581	-0.0001263	0.39887	0.00017626	0.11306	4.9963E-05	441.89337072722066	35.107	0.74732	34.892	34.548	35.296	-0.21555					56	18	4	0	0	0	0.95911	1	2636	2636		45.908	6.035	1	2428600			88207	3623	61361	61462	98037	98037					0.009454800984940448
VTDRSDARLQY	11	Unmodified	_VTDRSDARLQY_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.89324951171875	3	441.893236	1322.65788	-0.48283	-0.00021336	0.61286	0.00027082	0.13003	5.7458E-05	441.89349109116887	35.037	0.835	34.825	34.519	35.354	-0.21246					57	20	4	0	0	0	0.72615	2	2623	2623;2634		62.166	18.651	1	2310100			88208	3623	61361	61462	98038;98039	98038					0.009454800984940448
VTDSGPTFNY	10	Unmodified	_VTDSGPTFNY_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.7484130859375	2	550.748379	1099.4822	-0.11586	-6.3808E-05	0.27097	0.00014924	0.15511	8.5428E-05	550.7484189054213	58.416	0.97417	58.238	57.974	58.948	-0.17775					58	23	4	0	0	0	4.3571E-06	3	6413	6403;6413;6428		235.12	132.34	1	5160000			88209	18271	61362	61463	98040;98041;98042	98041					-0.06355734415592451
VTDSGPTFNY	10	Unmodified	_VTDSGPTFNY_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.7489624023438	2	550.748379	1099.4822	-0.018102	-9.9697E-06	0.39381	0.00021689	0.37571	0.00020692	550.7484430755361	58.365	0.95676	58.175	57.946	58.902	-0.19018					59	23	4	0	0	0	4.7728E-06	4	6425	6403;6412;6425;6438		251.33	117.85	1	4502500			88210	18271	61362	61463	98043;98044;98045;98046	98045					-0.06355734415592451
VTDSGPTFNY	10	Unmodified	_VTDSGPTFNY_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.7489013671875	2	550.748379	1099.4822	0.49012	0.00026994	-0.25667	-0.00014136	0.23345	0.00012857	550.7480827192051	58.484	0.89407	58.243	58.001	58.895	-0.24165					57	21	4	0	0	0	1.203E-05	4	6407	6396;6407;6420;6434		219.56	123.37	1	5454500			88211	18271	61362	61463	98047;98048;98049;98050	98048					-0.06355734415592451
VTDSGPTFNYL	11	Unmodified	_VTDSGPTFNYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.2902221679688	2	607.290411	1212.56627	-0.96233	-0.00058441	1.4241	0.00086485	0.46178	0.00028044	607.2912179089793	72.838	0.89769	72.561	72.154	73.051	-0.2769					60	20	4	0	0	0	2.1039E-09	4	8524	8524;8535;8547;8560		195.05	104.68	1	2876000			88212	18271	61363	61464	98051;98052;98053;98054	98051					-0.031512033187027555
VTDSGPTFNYL	11	Unmodified	_VTDSGPTFNYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.2899780273438	2	607.290411	1212.56627	-0.36594	-0.00022223	0.71093	0.00043174	0.34498	0.0002095	607.2908016298608	72.839	1.2153	72.574	72.001	73.217	-0.26479					69	28	4	0	0	0	4.9899E-13	4	8539	8539;8550;8562;8574		218.58	116.98	1	3537500			88213	18271	61363	61464	98055;98056;98057;98058	98055					-0.031512033187027555
VTDSGPTFNYL	11	Unmodified	_VTDSGPTFNYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.2901000976562	2	607.290411	1212.56627	-0.7095	-0.00043087	0.88272	0.00053607	0.17321	0.00010519	607.2908785493659	72.659	1.0047	72.461	72.034	73.039	-0.19811					63	23	4	0	0	0	2.7951E-18	4	8513	8501;8513;8523;8535		243.29	139.23	1	3390400			88214	18271	61363	61464	98059;98060;98061;98062	98060					-0.031512033187027555
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.2594604492188	2	549.259111	1096.50367	-0.55428	-0.00030444	-0.1369	-7.5195E-05	-0.69118	-0.00037964	549.2591262027091	40.028	1.4579	39.878	39.513	40.971	-0.1497					110	38	5	0	0	0	0.011521	5	3442	3419;3430;3442;3454;3468		229.33	118.99	1	21936000			88215	1851	61364	61465	98063;98064;98065;98066;98067	98065					-0.04072349386888163
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.2587890625	2	549.259111	1096.50367	-0.22838	-0.00012544	-0.48921	-0.0002687	-0.71758	-0.00039414	549.2589225851058	40.176	1.3491	39.951	39.62	40.969	-0.225					107	35	5	0	0	0	0.012922	5	3453	3431;3441;3453;3465;3477		219.56	109.23	1	19954000			88216	1851	61364	61465	98068;98069;98070;98071;98072	98070					-0.04072349386888163
VTDSIRDEY	9	Unmodified	_VTDSIRDEY_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L;ENST00000547548.1_1_12:32866256-32875568:+|nuORF	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.2591552734375	2	549.259111	1096.50367	-0.95697	-0.00052562	0.32339	0.00017762	-0.63358	-0.000348	549.2593890018355	40.18	1.4181	39.95	39.623	41.041	-0.23021					104	37	5	0	0	0	0.012922	6	3467	3421;3429;3441;3454;3467;3481		223.88	104.32	1	20663000			88217	1851	61364	61465	98073;98074;98075;98076;98077;98078	98077					-0.04072349386888163
VTDTASMKY	9	Unmodified	_VTDTASMKY_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.2415771484375	2	508.241875	1014.4692	-0.18306	-9.3041E-05	0.066953	3.4028E-05	-0.11611	-5.9012E-05	508.2418016249387	36.467	0.81788	36.262	36.021	36.839	-0.20518					52	20	4	0	0	0	0.01388	3	2858	2858;2867;2882		200.16	66.688	1	2939300			88218	3864	61365	61466	98079;98080;98081	98079					-0.037458887993466305
VTDTASMKY	9	Unmodified	_VTDTASMKY_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2415771484375	2	508.241875	1014.4692	0.0045686	2.3219E-06	-0.27177	-0.00013813	-0.2672	-0.0001358	508.2415659510389	36.48	0.71413	36.264	36.015	36.729	-0.21661					51	17	4	0	0	0	0.013065	3	2873	2851;2862;2873		209.84	80.979	1	3032600			88219	3864	61365	61466	98082;98083;98084	98084					-0.037458887993466305
VTDTASMKY	9	Unmodified	_VTDTASMKY_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.2417907714844	2	508.241875	1014.4692	1.3682	0.00069539	-1.5471	-0.00078628	-0.17882	-9.0885E-05	508.2409228472061	36.402	0.86586	36.204	35.91	36.776	-0.19829					62	21	6	0	0	0	0.013468	2	2842	2832;2842		225.24	91.767	1	2866200			88220	3864	61365	61466	98085;98086	98086					-0.037458887993466305
VTDTASMKY	9	Unmodified	_VTDTASMKY_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	508.241875	1014.4692	-1.2124	-0.00061618	-6.612	-0.0033605	-7.8243	-0.0039767	508.74028163854433	35.926	0.20454	35.884	35.726	35.931	-0.042454	-0.26936	-0.0059778	NaN	225.24	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60654			88221	3864	61365	61466							-0.037458887993466305
VTDTASMKY	9	Oxidation (M)	_VTDTASM(Oxidation (M))KY_		VTDTASM(1)KY		VTDTASM(73)KY	0	0	1		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2972412109375	2	516.239332	1030.46411	-0.56717	-0.0002928	2.1159	0.0010923	1.5487	0.00079952	516.2394384954371	26.795	0.75283	26.636	26.349	27.102	-0.15858					45	17	4	0	0	0	0.024181	1	1403	1403		72.879	20.58	1	789860			88222	3864	61365	61467	98087	98087		151			-0.0499019266196683
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.2847290039062	2	558.284597	1114.55464	-0.33845	-0.00018895	0.096017	5.3605E-05	-0.24243	-0.00013535	558.2845352249909	73.224	1.106	72.948	72.539	73.645	-0.2769					80	26	4	0	0	0	0.2449	5	8595	8574;8583;8595;8607;8628		115.46	36.195	1	7364600			88223	8804	61366	61468	98088;98089;98090;98091;98092	98090					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2841796875	2	558.284597	1114.55464	-0.35234	-0.0001967	0.12963	7.2369E-05	-0.22271	-0.00012433	558.2845342590571	73.217	1.0117	72.952	72.595	73.607	-0.26479					72	24	4	0	0	0	0.089914	5	8597	8587;8597;8609;8621;8635		138.24	49.599	1	8960300			88224	8804	61366	61468	98093;98094;98095;98096;98097	98094					0.0019459965794794698
VTDTGALYLY	10	Unmodified	_VTDTGALYLY_					0	0	0		ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2847900390625	2	558.284597	1114.55464	-0.58272	-0.00032532	0.24263	0.00013546	-0.34009	-0.00018986	558.2846250541586	73.078	1.1789	72.884	72.501	73.68	-0.19384					82	28	4	0	0	0	0.2449	5	8561	8551;8561;8572;8584;8596		115.46	43.582	1	7524400			88225	8804	61366	61468	98098;98099;98100;98101;98102	98099					0.0019459965794794698
VTDVEAVDR	9	Unmodified	_VTDVEAVDR_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.7953796386719	2	502.256371	1002.49819	-0.014968	-7.518E-06	-3.6748	-0.0018457	-3.6898	-0.0018532	502.25516354745787	49.994	0.62961	50.075	49.847	50.477	0.08099					52	18	5	0	0	0	0.024381	1	5126	5126		21.96	0	1	281350	+		88226	27175	61367	61469	98103	98103					-0.0029602817870681974
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.2619018554688	2	581.262185	1160.50982	-0.32426	-0.00018848	-0.0018218	-1.059E-06	-0.32608	-0.00018954	581.2621276544884	31.407	1.1231	31.166	30.915	32.038	-0.24109					73	27	5	0	0	0	1.203E-05	3	2075	2075;2087;2099		219.56	120.93	1	4711400			88227	3866	61368	61470	98104;98105;98106	98104					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.2623291015625	2	581.262185	1160.50982	-1.0795	-0.0006275	0.77658	0.0004514	-0.30297	-0.0001761	581.2626106608672	31.314	1.0414	31.129	30.865	31.907	-0.18503					70	25	4	0	0	0	6.1748E-06	4	2075	2052;2062;2075;2088		271.48	140.45	1	4696900			88228	3866	61368	61470	98107;98108;98109;98110	98109					-0.06401831155380933
VTEDGNQHVY	10	Unmodified	_VTEDGNQHVY_					0	0	0		ENSG00000121350|ENST00000240651|PYROXD1;nc|ENSG00000121350|Q8WU10-2|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	ENSG00000121350|ENST00000240651|PYROXD1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.2621459960938	2	581.262185	1160.50982	-0.8207	-0.00047704	0.53184	0.00030914	-0.28886	-0.0001679	581.2624131680994	31.286	0.89621	31.134	30.846	31.742	-0.15231					70	22	5	0	0	0	5.9521E-06	4	2057	2035;2044;2057;2071		231.3	140.93	1	5172400			88229	3866	61368	61470	98111;98112;98113;98114	98113					-0.06401831155380933
VTEDILKLY	9	Unmodified	_VTEDILKLY_					0	0	0		ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3110961914062	2	547.310615	1092.60668	-0.29998	-0.00016418	-0.3042	-0.00016649	-0.60418	-0.00033068	547.3103833347495	63.72	1.1281	63.493	63.135	64.263	-0.22773					97	28	5	0	0	0	0.45795	1	7252	7252		62.107	1.1355	1	15008000			88230	10888	61369	61471	98115	98115					0.06407763071729278
VTEEELNFEKG	11	Unmodified	_VTEEELNFEKG_					0	0	0		ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	647.8121948242188	2	647.811707	1293.60886	-0.76603	-0.00049625	0.36834	0.00023861	-0.39769	-0.00025763	647.8119789604525	62.913	1.5886	62.654	62.368	63.956	-0.25824					104	43	4	0	0	0	0.93459	1	7054	7054		49.536	1.5765	1	11044000			88231	1443	61370	61472	98116	98116					-0.02619852981160875
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.2686157226562	2	556.268947	1110.52334	-0.39659	-0.00022061	0.12135	6.7503E-05	-0.27524	-0.00015311	556.2689650885834	64.392	1.3985	64.157	63.775	65.174	-0.23438					95	34	5	0	0	0	0.021872	5	7305	7294;7305;7317;7329;7342		148.04	57.673	1	9719800			88232	6130	61371	61473	98117;98118;98119;98120;98121	98118					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.2689819335938	2	556.268947	1110.52334	-0.076303	-4.2445E-05	-0.24983	-0.00013897	-0.32613	-0.00018142	556.2687844968608	64.393	1.4391	64.194	63.75	65.189	-0.19914					100	35	5	0	0	0	0.033448	6	7319	7298;7308;7319;7331;7343;7358		138.83	59.113	1	9120500			88233	6130	61371	61473	98122;98123;98124;98125;98126;98127	98124					-0.02749973376126036
VTEEFQPVY	9	Unmodified	_VTEEFQPVY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;ITGB1|p.K438Rfs*17|1|0.25|ENSG00000150093|chr10:32920041-32920041|T/-|frameshift_variant;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	556.26904296875	2	556.268947	1110.52334	-0.63038	-0.00035066	0.24579	0.00013673	-0.38459	-0.00021393	556.2690671483758	64.467	1.3887	64.212	63.755	65.144	-0.25563					100	34	5	0	0	0	0.027092	4	7306	7296;7306;7317;7330		143.89	61.646	1	10262000			88234	6130	61371	61473	98128;98129;98130;98131	98129					-0.02749973376126036
VTEENKEEY	9	Unmodified	_VTEENKEEY_					0	0	0		ENSG00000198373|ENST00000359154|WWP2;ENST00000567161.1_1_16:69967954-69970356:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.7557373046875	2	570.756401	1139.49825	-0.63192	-0.00036067	0.72692	0.00041489	0.095002	5.4223E-05	570.7564807266984	26.569	0.98804	26.333	25.762	26.75	-0.23603					78	26	5	0	0	0	0.013887	1	1406	1406		180.93	32.883	1	991420			88235	1645;10128	61372	61474	98132	98132					-0.06592072969374385
VTEENKEEY	9	Unmodified	_VTEENKEEY_					0	0	0		ENSG00000198373|ENST00000359154|WWP2;ENST00000567161.1_1_16:69967954-69970356:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	570.756401	1139.49825	-0.13129	-7.4936E-05	-0.52478	-0.00029952	-0.65607	-0.00037446	570.755971164566	26.396	0.51818	26.228	25.988	26.506	-0.16816	-0.052833	-0.0003218	NaN	180.93	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818400			88236	1645;10128	61372	61474							-0.06592072969374385
VTEFHLLGFG	10	Unmodified	_VTEFHLLGFG_					0	0	0		nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.3348388671875	2	560.295299	1118.57605	-0.51339	-0.00028765	-1.6384	-0.000918	-2.1518	-0.0012057	560.2945903738971	47.616	1.7127	47.616	47.326	49.039	0					81	50	2	0	0	0	0.03519	1	5007	5007		30.504	0	1	752000			88237	18564	61373	61475	98133	98133					0.02150029477343196
VTEFHLLGFG	10	Unmodified	_VTEFHLLGFG_					0	0	0		nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	nc|ENSG00000181282|Q8NH89|OR5AK3P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.33447265625	2	560.295299	1118.57605	-0.90621	-0.00050775	-0.96094	-0.00053841	-1.8672	-0.0010462	560.7960156152876	47.611	1.6904	47.67	47.354	49.044	0.059093					70	48	3	0	0	0	0.03519	1	4925	4925		30.504	0	1	706230			88238	18564	61373	61475	98134	98134					0.02150029477343196
VTEFSLNTY	9	Unmodified	_VTEFSLNTY_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.2608642578125	2	537.261122	1072.50769	-1.0409	-0.00055926	0.81663	0.00043874	-0.22432	-0.00012052	537.2613788248736	69.27	0.95998	69.008	68.666	69.626	-0.26165					50	22	4	0	0	0	0.03666	1	8014	8014		136.27	48.514	1	2526900			88239	7065	61374	61476	98135	98135					-0.025662598931603497
VTEFSLNTY	9	Unmodified	_VTEFSLNTY_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.26123046875	2	537.261122	1072.50769	-0.12292	-6.604E-05	-0.38907	-0.00020903	-0.51199	-0.00027507	537.2607665024225	69.186	1.114	68.943	68.626	69.74	-0.24278					59	26	4	0	0	0	0.013065	1	8019	8019		171.53	86.616	1	3238000			88240	7065	61374	61476	98136	98136					-0.025662598931603497
VTEFSLNTY	9	Unmodified	_VTEFSLNTY_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.2616577148438	2	537.261122	1072.50769	-0.87592	-0.0004706	0.4222	0.00022683	-0.45372	-0.00024377	537.2611747359746	69.186	0.82872	68.963	68.685	69.514	-0.22245					49	19	4	0	0	0	0.014115	1	8004	8004		223.88	103.26	1	3399100			88241	7065	61374	61476	98137	98137					-0.025662598931603497
VTEGARDLI	9	Unmodified	_VTEGARDLI_					0	0	0		ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2348937988281	2	487.269281	972.52401	-0.75012	-0.00036551	-1.3066	-0.00063665	-2.0567	-0.0010022	487.26840031273116	48.234	0.26741	47.958	47.812	48.08	-0.27598					8	6	2	0	0	0	0.024319	1	4768	4768		56.721	22.549	1	151790			88242	1854	61375	61477	98138	98138					0.03664866063570571
VTEGARDLI	9	Unmodified	_VTEGARDLI_					0	0	0		ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	487.269281	972.52401	-0.53695	-0.00026164	-0.20773	-0.00010122	-0.74467	-0.00036286	487.2691917110976	47.956	0.63046	47.956	47.748	48.378	0	0.050955	0.00010135	NaN	31.53	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422010			88243	1854	61375	61477							0.03664866063570571
VTEGARDLI	9	Unmodified	_VTEGARDLI_					0	0	0		ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	487.269281	972.52401	-1.0542	-0.00051368	0.077774	3.7897E-05	-0.97643	-0.00047578	487.26933780245196	47.81	0.43178	47.87	47.677	48.109	0.059093	-0.035092	0.00037958	NaN	31.53	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	643030			88244	1854	61375	61477							0.03664866063570571
VTEGHIPF	8	Unmodified	_VTEGHIPF_					0	0	0		ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.7793273925781	2	450.23471	898.454868	-0.042254	-1.9024E-05	-3.8934	-0.001753	-3.9357	-0.001772	450.23267840446033	26.265	1.1701	26.265	25.823	26.993	0					70	27	5	0	0	0	0.027866	1	1268	1268		39.021	0	1	1005500			88245	4480	61376	61478	98139	98139					0.001578268346747791
VTEGHIPF	8	Unmodified	_VTEGHIPF_					0	0	0		ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	450.23471	898.454868	0.2377	0.00010702	-4.5347	-0.0020417	-4.297	-0.0019347	450.2325207987104	25.907	1.0489	25.987	25.664	26.713	0.08009	-0.1826	-0.00032226	NaN	39.021	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022300			88246	4480	61376	61478							0.001578268346747791
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.7686157226562	2	555.769311	1109.52407	-0.65937	-0.00036646	-0.12451	-6.9201E-05	-0.78389	-0.00043566	555.7693266609592	38.107	1.1166	37.927	37.63	38.746	-0.17929					114	31	6	0	0	0	0.0089529	11	3148	3091;3100;3112;3124;3136;3148;3161;3176;3187;3199;3211		239.13	92.103	1	100520000			88247	9935	61377	61479	98140;98141;98142;98143;98144;98145;98146;98147;98148;98149;98150	98145					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7689208984375	2	555.769311	1109.52407	-0.83131	-0.00046202	-0.061531	-3.4197E-05	-0.89284	-0.00049621	555.7693436767697	38.164	1.109	37.943	37.613	38.722	-0.22149					87	30	3	0	0	0	0.0086463	10	3129	3094;3105;3117;3129;3141;3153;3166;3180;3191;3205		248.96	105.07	1	105860000			88248	9935	61377	61479	98151;98152;98153;98154;98155;98156;98157;98158;98159;98160	98154					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7689819335938	2	555.769311	1109.52407	-0.81465	-0.00045276	-0.12634	-7.0216E-05	-0.941	-0.00052298	555.7693174749097	38.182	1.173	37.963	37.571	38.744	-0.21848					112	32	6	0	0	0	0.0087688	11	3117	3081;3093;3105;3117;3130;3142;3155;3168;3180;3193;3204		264.95	107.62	1	106490000			88249	9935	61377	61479	98161;98162;98163;98164;98165;98166;98167;98168;98169;98170;98171	98164					-0.02631178727074257
VTEIDQDKY	9	Unmodified	_VTEIDQDKY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.769311	1109.52407	-0.89457	-0.00049717	3.6946	0.0020534	2.8001	0.0015562	556.2740912392372	37.945	0.20766	37.972	37.849	38.057	0.027275	0.020725	0.0041985	NaN	248.96	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79403			88250	9935	61377	61479							-0.02631178727074257
VTEINASLI	9	Unmodified	_VTEINASLI_					0	0	0			REV__ENST00000475815.5_1_2:36779699-36779816:-|nuORF	REV__ENST00000475815.5_1_2:36779699-36779816:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	480.2734680175781	2	480.274032	958.533512	-0.22894	-0.00010995	0.094948	4.5601E-05	-0.13399	-6.4354E-05	480.274096512382	75.961	1.3364	75.702	75.398	76.734	-0.25865					88	32	4	0	0	0	0.074956	1	9020	9020		119.56	4.0978	1	3558300	+		88251	33302	61378	61480	98172	98172					0.05258634349092972
VTEKDLLLY	9	Unmodified	_VTEKDLLLY_					0	0	0		CIRH1A-SNTB2|1|fusion;ENSG00000168807|ENST00000336278|SNTB2	CIRH1A-SNTB2|1|fusion	CIRH1A-SNTB2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	547.3109130859375	2	547.310615	1092.60668	-0.29998	-0.00016418	-0.3042	-0.00016649	-0.60418	-0.00033068	547.3103833347495	63.72	1.1281	63.493	63.135	64.263	-0.22773					97	28	5	0	0	0	0.030064	5	7213	7191;7201;7213;7225;7237		141.52	36.774	1	15008000			88252	446	61379	61481	98173;98174;98175;98176;98177	98175					0.06407763071729278
VTEKDLLLY	9	Unmodified	_VTEKDLLLY_					0	0	0		CIRH1A-SNTB2|1|fusion;ENSG00000168807|ENST00000336278|SNTB2	CIRH1A-SNTB2|1|fusion	CIRH1A-SNTB2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.3111572265625	2	547.310615	1092.60668	-0.19471	-0.00010657	-0.37414	-0.00020477	-0.56885	-0.00031134	547.3103323511781	63.715	1.4959	63.522	62.738	64.234	-0.19243					101	37	5	0	0	0	0.020687	5	7223	7199;7211;7223;7235;7248		148.99	41.979	1	15441000			88253	446	61379	61481	98178;98179;98180;98181;98182	98180					0.06407763071729278
VTEKDLLLY	9	Unmodified	_VTEKDLLLY_					0	0	0		CIRH1A-SNTB2|1|fusion;ENSG00000168807|ENST00000336278|SNTB2	CIRH1A-SNTB2|1|fusion	CIRH1A-SNTB2|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.3106689453125	2	547.310615	1092.60668	-0.092686	-5.0728E-05	-0.51296	-0.00028075	-0.60564	-0.00033147	547.3102698258109	63.806	1.028	63.548	63.239	64.267	-0.25824					98	26	6	0	0	0	0.062622	2	7227	7203;7227		124.08	22.479	1	15460000			88254	446	61379	61481	98183;98184	98184					0.06407763071729278
VTEKLEEVV	9	Unmodified	_VTEKLEEVV_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	523.2803955078125	2	523.292422	1044.57029	-1.201	-0.00062846	4.2109	0.0022035	3.01	0.0015751	523.7950982778973	38.934	0.38041	38.96	38.649	39.03	0.025352					11	9	2	0	0	0	0.024374	1	3226	3226		40.778	3.6191	1	97442	+		88255	29205	61380	61482	98185	98185					0.04978886175013031
VTEKLEEVV	9	Unmodified	_VTEKLEEVV_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.292422	1044.57029	-0.79345	-0.00041521	0.55052	0.00028808	-0.24293	-0.00012712	523.2923084215233	39.077	0.3174	38.978	38.737	39.054	-0.098755	-0.016911	-0.00020767	NaN	19.104	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118120	+		88256	29205	61380	61482							0.04978886175013031
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.7874145507812	2	530.787307	1059.56006	-0.44795	-0.00023777	-1.7423	-0.00092479	-2.1903	-0.0011626	530.7860636296373	56.935	1.0058	56.767	56.363	57.369	-0.1672					37	26	2	0	0	0	0.013995	4	6162	6162;6172;6184;6196		204.1	92.448	1	37396000			88257	8414	61381	61483	98186;98187;98188;98189	98186					0.032663232404502196
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.7863159179688	2	530.787307	1059.56006	-0.19664	-0.00010437	-1.2283	-0.00065195	-1.4249	-0.00075632	530.78617524746	56.963	0.91582	56.76	56.404	57.32	-0.20209					47	24	4	0	0	0	0.013995	4	6195	6171;6183;6195;6207		197.6	88.258	1	37456000			88258	8414	61381	61483	98190;98191;98192;98193	98192					0.032663232404502196
VTELHVISY	9	Unmodified	_VTELHVISY_					0	0	0		nc|ENSG00000173821|Q63HN8-4|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8|RNF213;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000560083.1_1_17:78360201-78362555:+|nuORF	nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8-4|RNF213	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.7869262695312	2	530.787307	1059.56006	0.061198	3.2483E-05	-2.6137	-0.0013873	-2.5525	-0.0013548	530.785578218465	57.057	1.1259	56.832	56.426	57.551	-0.2248					40	29	2	0	0	0	0.010315	4	6177	6166;6177;6189;6201		231.86	114.96	1	40913000			88259	8414	61381	61483	98194;98195;98196;98197	98195					0.032663232404502196
VTELPYLIVDS	11	Unmodified	_VTELPYLIVDS_					0	0	0			REV__nc|ENSG00000164209|Q96AG3-2|SLC25A46	REV__nc|ENSG00000164209|Q96AG3-2|SLC25A46	MSMS	OPSCC_40_ClassI_Rep-2	5	416.89471435546875	3	416.895583	1247.66492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.082	1	29.904	29.404	30.404	-0.17818								0	0	0	1.0288	1	1888	1888		42.338	5.8102	1		+		88260	25716	61382	61484	98198	98198					0.05099399926325532
VTELTELI	8	Unmodified	_VTELTELI_					0	0	0		ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	459.263916015625	2	459.263133	916.511714	0.46225	0.00021229	0.93504	0.00042943	1.3973	0.00064172	459.2634305744404	41.905	0.84548	41.905	41.652	42.497	0					70	24	4	0	0	0	0.48546	2	3815	3815;3827		86.935	17.842	1	5637700			88261	10507;9220	61383	61485	98199;98200	98199					0.05011829600528017
VTELTELI	8	Unmodified	_VTELTELI_					0	0	0		ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.26409912109375	2	459.263133	916.511714	-0.098594	-4.528E-05	1.6072	0.00073814	1.5086	0.00069286	459.26372469807336	42.124	0.85069	41.992	41.641	42.491	-0.13219					80	24	5	0	0	0	0.40853	1	3837	3837		96.048	14.332	1	5106500			88262	10507;9220	61383	61485	98201	98201					0.05011829600528017
VTELTELI	8	Unmodified	_VTELTELI_					0	0	0		ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.263916015625	2	459.263133	916.511714	0.29401	0.00013503	1.1564	0.00053108	1.4504	0.00066611	459.2635470073943	42.108	0.82082	42.134	41.821	42.641	0.026012					67	23	4	0	0	0	0.30995	1	3793	3793		109.7	14.326	1	5203000			88263	10507;9220	61383	61485	98202	98202					0.05011829600528017
VTELTELI	8	Unmodified	_VTELTELI_					0	0	0		ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	459.2641906738281	2	459.263133	916.511714	-0.040593	-1.8643E-05	1.0058	0.00046191	0.96517	0.00044327	459.26360749820844	41.97	0.96232	41.847	41.527	42.49	-0.12299					49	25	2	0	0	0	0.48546	4	3734	3734;3743;3766;3794		86.935	12.418	1	11769000			88264	10507;9220	61383	61485	98203;98204;98205;98206	98203					0.05011829600528017
VTELTELI	8	Unmodified	_VTELTELI_					0	0	0		ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	459.26361083984375	2	459.263133	916.511714	-0.50369	-0.00023133	1.6242	0.00074595	1.1205	0.00051463	459.2638240978538	42.189	1.2989	41.958	41.546	42.845	-0.23186					112	34	5	0	0	0	0.40853	4	3772	3760;3772;3784;3796		96.048	12.761	1	12143000			88265	10507;9220	61383	61485	98207;98208;98209;98210	98208					0.05011829600528017
VTELTELI	8	Unmodified	_VTELTELI_					0	0	0		ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	459.26361083984375	2	459.263133	916.511714	-0.10088	-4.6329E-05	1.1314	0.00051962	1.0305	0.00047329	459.26358460509266	42.18	1.0847	41.95	41.508	42.593	-0.23029					108	29	6	0	0	0	0.48546	5	3749	3749;3759;3771;3784;3796		86.935	12.418	1	11714000			88266	10507;9220	61383	61485	98211;98212;98213;98214;98215	98211					0.05011829600528017
VTELVQSKV	9	Unmodified	_VTELVQSKV_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7827453613281	2	501.795132	1001.57571	-1.001	-0.00050228	2.508	0.0012585	1.5071	0.00075625	501.7965297405191	44.277	0.16712	44.277	44.215	44.382	0					7	4	2	0	0	0	0.024374	1	4214	4214		49.442	10.189	1	230360			88267	3446	61384	61486	98216	98216					0.07498609757476515
VTEMESSVY	9	Unmodified	_VTEMESSVY_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7587280273438	2	522.73134	1043.44813	-0.33805	-0.00017671	1.8424	0.00096309	1.5044	0.00078638	522.7319842632077	41.862	1.8835	41.739	40.881	42.765	-0.12299					89	49	3	0	0	0	0.023596	1	3635	3635		63.306	7.8021	1	939170			88268	9025	61385	61487	98217	98217					-0.07185898898865162
VTEMKSLNT	9	Unmodified	_VTEMKSLNT_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.80859375	2	511.762975	1021.5114	0.35534	0.00018185	-0.87297	-0.00044676	-0.51763	-0.0002649	511.7625118578625	21.916	1.4556	21.732	21.202	22.658	-0.18417					39	30	2	0	0	0	0.024438	1	743	743		29.17	7.2102	1	47829	+		88269	20191	61386	61488	98218	98218					0.001500866090168529
VTENPKTEV	9	Unmodified	_VTENPKTEV_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.7679138183594	2	508.766571	1015.51859	-0.58322	-0.00029672	0.56099	0.00028541	-0.02223	-1.131E-05	508.7670030526547	22.684	1.752	22.684	21.771	23.523	0					104	38	4	0	0	0	0.22902	1	840	840		85.161	2.9203	1	5505800			88270	5410	61387	61489	98219	98219					0.011451424810957178
VTEPPLGL	8	Unmodified	_VTEPPLGL_					0	0	0		ENST00000528048.5_2_11:111957606-111965694:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	412.7129821777344	2	413.239461	824.46437	0.22713	9.3859E-05	-3.0652	-0.0012667	-2.8381	-0.0011728	413.23822421461585	73.815	0.67876	73.543	72.967	73.646	-0.27126					23	17	2	0	0	0	0.027866	1	8900	8900		37.028	1.8278	1	230100			88271	16175	61388	61490	98220	98220					0.04511595120197853
VTEPPLGL	8	Unmodified	_VTEPPLGL_					0	0	0		ENST00000528048.5_2_11:111957606-111965694:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	ENST00000528048.5_2_11:111957606-111965694:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	413.239461	824.46437	0.041752	1.7254E-05	-2.0693	-0.00085513	-2.0276	-0.00083787	413.2385500609739	73.686	1.2174	73.496	72.504	73.722	-0.19027	0.009983	0.00049909	NaN	37.028	48	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249330			88272	16175	61388	61490							0.04511595120197853
VTEPSEPQVQP	11	Unmodified	_VTEPSEPQVQP_					0	0	0			REV__ENSG00000135631|ENST00000486777|RAB11FIP5	REV__ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.201171875	3	404.203187	1209.58773	-0.83275	-0.0003366	-3.9846	-0.0016106	-4.8174	-0.0019472	404.201499117163	20.833	0.89176	20.609	20.167	21.058	-0.22344					50	17	5	0	0	0	0.84303	1	558	558		55.084	13.657	1	876480	+		88273	23562	61389	61491	98221	98221					-0.008678182899984677
VTEPTHYF	8	Unmodified	_VTEPTHYF_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.2740173339844	2	497.23745	992.460347	-0.57391	-0.00028537	3.0064	0.0014949	2.4324	0.0012095	497.2404093691129	40.422	0.4325	40.445	40.162	40.595	0.023006					15	11	2	0	0	0	0.027866	1	3458	3458		33.516	0	1	116690			88274	9743	61390	61492	98222	98222					-0.03618494373529302
VTEPVPLA	8	Unmodified	_VTEPVPLA_					0	0	0		YLPM1|p.Q943E|1|0.36|ENSG00000119596|chr14:74798124-74798124|C/G|missense_variant	YLPM1|p.Q943E|1|0.36|ENSG00000119596|chr14:74798124-74798124|C/G|missense_variant	YLPM1|p.Q943E|1|0.36|ENSG00000119596|chr14:74798124-74798124|C/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	412.71307373046875	2	413.239461	824.46437	0.0077341	3.196E-06	-2.8152	-0.0011634	-2.8075	-0.0011602	413.23828116478836	73.308	0.61356	73.318	72.944	73.558	0.0096512					24	15	2	0	0	0	0.027866	1	8856	8856		35.201	0	1	149280			88275	38164	61391	61493	98223	98223					0.045115951201864846
VTEQDSKDSTY	11	Unmodified	_VTEQDSKDSTY_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	636.783203125	2	636.783147	1271.55174	-1.8747	-0.0011937	2.0096	0.0012797	0.13494	8.5929E-05	636.7843488404229	26.712	0.68583	26.476	26.232	26.918	-0.23603					48	16	5	0	0	0	0.0041948	2	1412	1412;1423		147.3	48.819	1	2032800			88276	18677	61392	61494	98224;98225	98224					-0.07317320257516258
VTEQDSKDSTY	11	Unmodified	_VTEQDSKDSTY_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	636.78369140625	2	636.783147	1271.55174	-0.52449	-0.00033398	0.61167	0.0003895	0.087179	5.5514E-05	636.7834448599068	26.46	0.62855	26.292	26.052	26.68	-0.16816					47	15	4	0	0	0	8.7623E-08	2	1368	1368;1380		190.57	100.2	1	1577800			88277	18677	61392	61494	98226;98227	98226					-0.07317320257516258
VTEQNRNLL	9	Unmodified	_VTEQNRNLL_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8134155273438	2	543.798737	1085.58292	-1.5827	-0.00086069	-1.0107	-0.00054961	-2.5934	-0.0014103	543.7978807172001	93.362	0.21796	93.222	93.135	93.353	-0.13995					6	4	2	0	0	0	0.024495	1	11475	11475		34.173	14.176	1	20526			88278	1055	61393	61495	98228	98228					0.043553423578941874
VTESIALY	8	Unmodified	_VTESIALY_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	448.2082214355469	2	448.242201	894.469849	0.53545	0.00024001	-3.7763	-0.0016927	-3.2408	-0.0014527	448.2403251380653	21.933	0.47713	21.745	21.434	21.911	-0.1884					22	9	3	0	0	0	0.027866	1	703	703		26.796	17.326	1	130110	+		88279	28991	61394	61496	98229	98229					0.01839273911980399
VTETVQNLW	9	Unmodified	_VTETVQNLW_					0	0	0		ENST00000033079.7_2_5:137321001-137323237:-|nuORF	ENST00000033079.7_2_5:137321001-137323237:-|nuORF	ENST00000033079.7_2_5:137321001-137323237:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	545.2584838867188	2	545.282389	1088.55022	-1.1051	-0.00060261	-2.999	-0.0016353	-4.1042	-0.0022379	545.281550346143	61.399	0.36893	61.141	60.848	61.217	-0.25725					14	8	2	0	0	0	0.024397	1	6840	6840		47.657	17.816	1	93054			88280	11104	61395	61497	98230	98230					0.009491352350551097
VTEVELLLY	9	Unmodified	_VTEVELLLY_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8058471679688	2	539.805165	1077.59578	-0.76034	-0.00041044	0.98033	0.00052919	0.21999	0.00011875	539.8053717894767	88.67	0.74721	88.499	88.297	89.044	-0.17053					35	17	3	0	0	0	0.67308	1	10811	10811		47.916	5.4411	1	465200			88281	2719	61396	61498	98231	98231					0.060083606974330905
VTEVELLLY	9	Unmodified	_VTEVELLLY_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.805165	1077.59578	-0.31599	-0.00017057	0.67212	0.00036281	0.35613	0.00019224	539.8052870450463	88.689	0.59165	88.557	88.318	88.91	-0.13135	0.0091868	-0.00029415	NaN	47.916	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398680			88282	2719	61396	61498							0.060083606974330905
VTEVELLLY	9	Unmodified	_VTEVELLLY_					0	0	0		ENSG00000105732|ENST00000359044|ZNF574;nc|ENSG00000105732|Q6ZN55-2|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	ENSG00000105732|ENST00000359044|ZNF574	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.805165	1077.59578	-0.77735	-0.00041962	1.1818	0.00063794	0.40445	0.00021832	539.8054774713477	88.725	0.63083	88.588	88.315	88.946	-0.13744	0.039816	0.00025611	NaN	47.916	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329610			88283	2719	61396	61498							0.060083606974330905
VTFCSYSVME	10	Unmodified	_VTFCSYSVME_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000481883.1_1_21:47977249-47978399:+|nuORF;ENST00000472364.1_1_21:47974114-47978399:+|nuORF	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.248779296875	2	583.248843	1164.48313	-0.49347	-0.00028782	0.66808	0.00038966	0.17461	0.00010184	583.2490251597295	80.26	1.0732	80.054	79.714	80.787	-0.20633					61	25	3	0	0	0	0.71272	1	9616	9616		66.429	3.123	1	2116200			88284	6804	61397	61499	98232	98232					-0.09252979362599945
VTFEDVAVTF	10	Unmodified	_VTFEDVAVTF_					0	0	0		ENSG00000197714|ENST00000360338|ZNF460;ENSG00000178229|ENST00000321545|ZNF543	ENSG00000197714|ENST00000360338|ZNF460	ENSG00000197714|ENST00000360338|ZNF460	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7689208984375	2	564.284597	1126.55464	-0.18597	-0.00010494	0.19001	0.00010722	0.0040433	2.2815E-06	564.2847406530782	87.579	0.50221	87.4	87.154	87.656	-0.17875					20	11	2	0	0	0	0.03519	1	10649	10649		56.721	14.247	1	256570			88285	10038	61398	61500	98233	98233					-0.003574003420453664
VTFFEPNTI	9	Unmodified	_VTFFEPNTI_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	534.2715454101562	2	534.274032	1066.53351	0.63428	0.00033888	-4.3052	-0.0023001	-3.6709	-0.0019613	534.2716004006553	59.504	0.9988	59.504	59.257	60.256	0					66	26	4	0	0	0	0.2508	1	6814	6814		82.241	1.7859	1	4904100	+		88286	19766	61399	61501	98234	98234					0.0029063434908493946
VTFFLHRKTT	10	Unmodified	_VTFFLHRKTT_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	417.207275390625	3	417.239907	1248.69789	-0.64436	-0.00026885	-1.5727	-0.00065621	-2.2171	-0.00092506	417.23946063642285	26.317	0.58607	26.154	25.951	26.537	-0.16331					41	16	3	0	0	0	0.03519	1	1368	1368		34.087	0.16487	1	365920	+		88287	28172	61400	61502	98235	98235					0.0834907155970086
VTFFLHRKTT	10	Unmodified	_VTFFLHRKTT_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	417.239907	1248.69789	-0.2554	-0.00010656	-2.2996	-0.00095947	-2.555	-0.001066	417.2390231257165	26.182	0.68809	26.014	25.774	26.462	-0.16816	-0.083486	-0.00057279	NaN	34.087	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417920	+		88288	28172	61400	61502							0.0834907155970086
VTFFTRVF	8	Unmodified	_VTFFTRVF_					0	0	0		ENST00000369485.8_1_6:89320735-89320852:-|nuORF	ENST00000369485.8_1_6:89320735-89320852:-|nuORF	ENST00000369485.8_1_6:89320735-89320852:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.80865478515625	2	508.781828	1015.5491	-0.87844	-0.00044693	0.11532	5.8673E-05	-0.76312	-0.00038826	509.28321678744817	29.48	0.6874	29.235	28.753	29.44	-0.24524					23	15	2	0	0	0	0.027866	1	1778	1778		31.955	14.59	1	89248			88289	12922	61401	61503	98236	98236					0.041949656568021965
VTFHRFSNL	9	Unmodified	_VTFHRFSNL_					0	0	0		ENST00000486347.5_1_X:133927858-133930138:-|nuORF	ENST00000486347.5_1_X:133927858-133930138:-|nuORF	ENST00000486347.5_1_X:133927858-133930138:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.8154907226562	2	560.79854	1119.58253	-0.86271	-0.00048381	-1.6929	-0.00094939	-2.5556	-0.0014332	560.7981414380336	81.839	0.34126	81.696	81.441	81.782	-0.14249					10	7	2	0	0	0	0.024438	1	9825	9825		44.377	5.3557	1	41637			88290	15346	61402	61504	98237	98237					0.027519674287077578
VTFHVILSV	9	Unmodified	_VTFHVILSV_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.7843017578125	2	507.80276	1013.59097	-0.22005	-0.00011174	3.9533	0.0020075	3.7332	0.0018957	507.80460323513574	72.635	0.2087	72.635	72.573	72.782	0					6	4	2	0	0	0	0.024323	1	8840	8840		35.618	0	1	28092			88291	3726	61403	61505	98238	98238					0.08471521345336441
VTFHWEFL	8	Unmodified	_VTFHWEFL_					0	0	0			REV__ENSG00000198833|ENST00000435041|UBE2J1	REV__ENSG00000198833|ENST00000435041|UBE2J1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.822021484375	2	539.77146	1077.52837	-0.25395	-0.00013707	-2.9785	-0.0016077	-3.2324	-0.0017448	539.7696626587486	51.449	0.60862	51.449	50.992	51.6	0					22	16	2	0	0	0	0.027866	1	5387	5387		31.955	0	1	271460	+		88292	28492	61404	61506	98239	98239					-0.0072962472286235425
VTFILPVCPTF	11	Unmodified	_VTFILPVCPTF_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	412.89483642578125	3	412.894749	1235.66242	0.054664	2.257E-05	-0.51902	-0.0002143	-0.46435	-0.00019173	412.8945294662656	30.429	0.9638	30.279	29.967	30.931	-0.14952					70	22	4	0	0	0	1.0022	1	1937	1937		36.318	0	1	2331000			88293	1688	61405	61507	98240	98240					0.05401272987660377
VTFIWDQV	8	Unmodified	_VTFIWDQV_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.27398681640625	2	504.263468	1006.51238	0.39398	0.00019867	-1.0865	-0.00054789	-0.69253	-0.00034922	504.2629272023818	91.287	0.71416	91.298	91.033	91.747	0.011276					33	16	4	0	0	0	0.027866	1	11480	11480		51.335	8.9393	1	1220600	+		88294	24620	61406	61508	98241	98241					0.00938669040226614
VTFIWDQV	8	Unmodified	_VTFIWDQV_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	504.263468	1006.51238	-1.247	-0.00062881	0.80272	0.00040478	-0.44427	-0.00022403	504.26368236213955	91.252	0.7124	91.104	90.813	91.525	-0.1487	-0.095987	0.00076738	NaN	26.693	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453660	+		88295	24620	61406	61508							0.00938669040226614
VTFIWDQV	8	Unmodified	_VTFIWDQV_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	504.263468	1006.51238	-0.57724	-0.00029108	0.38344	0.00019335	-0.19381	-9.7729E-05	504.26350693103973	91.253	0.75536	91.13	90.874	91.629	-0.12341	-0.069696	0.00034453	NaN	26.693	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569800	+		88296	24620	61406	61508							0.00938669040226614
VTFIWDQV	8	Unmodified	_VTFIWDQV_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	504.263468	1006.51238	0.025447	1.2832E-05	0.071874	3.6243E-05	0.097321	4.9076E-05	504.2631085249562	91.297	0.58788	91.157	90.943	91.531	-0.13942	-0.042381	3.0306E-05	NaN	26.693	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522160	+		88297	24620	61406	61508							0.00938669040226614
VTFIWSREL	9	Unmodified	_VTFIWSREL_					0	0	0			REV__ENST00000474368.1_1_21:42773880-42775423:+|nuORF	REV__ENST00000474368.1_1_21:42773880-42775423:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	575.2916259765625	2	575.816399	1149.61824	-0.99139	-0.00057086	2.0984	0.0012083	1.107	0.00063744	575.8175759723296	82.327	0.6949	82.187	81.827	82.522	-0.14014					24	15	2	0	0	0	0.024427	1	9876	9876		34.173	12.213	1	138240	+		88298	31804	61407	61509	98242	98242					0.04942004885697315
VTFLLPAGW	9	Unmodified	_VTFLLPAGW_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.2841796875	2	502.284203	1002.55385	0.84086	0.00042235	-1.0072	-0.00050588	-0.1663	-8.3531E-05	502.28360587452937	97.721	0.99725	97.584	97.149	98.146	-0.1367					67	23	4	0	0	0	0.26797	3	12067	12067;12079;12091		79.939	28.002	1	3017000			88299	8631	61408	61510	98243;98244;98245	98243					0.052678497995543694
VTFLLPAGW	9	Unmodified	_VTFLLPAGW_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2840576171875	2	502.284203	1002.55385	1.023	0.00051386	-1.2322	-0.00061892	-0.20917	-0.00010506	502.2834960739512	97.685	0.88074	97.562	97.107	97.988	-0.12368					61	20	4	0	0	0	0.40179	2	12080	12080;12104		65.803	7.0212	1	3002100			88300	8631	61408	61510	98246;98247	98246					0.052678497995543694
VTFLLPAGW	9	Unmodified	_VTFLLPAGW_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.2842712402344	2	502.284203	1002.55385	-0.42408	-0.00021301	0.039606	1.9894E-05	-0.38447	-0.00019311	502.2841276102971	97.766	0.82243	97.601	97.215	98.037	-0.1652					59	19	4	0	0	0	0.40179	3	12073	12073;12085;12097		65.803	13.108	1	2767400			88301	8631	61408	61510	98248;98249;98250	98248					0.052678497995543694
VTFLLRIN	8	Unmodified	_VTFLLRIN_					0	0	0			REV__ENST00000531513.5_1_11:11964592-11970195:+|nuORF	REV__ENST00000531513.5_1_11:11964592-11970195:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2850646972656	2	488.302927	974.591301	-0.89837	-0.00043868	0.86011	0.00041999	-0.038263	-1.8684E-05	488.3032903244564	54.935	0.30342	55.033	54.845	55.148	0.098015					13	8	2	0	0	0	0.027866	1	5962	5962		38.806	3.6054	1	433210	+		88302	34559	61409	61511	98251	98251					0.1029894106517304
VTFLLRSGD	9	Unmodified	_VTFLLRSGD_					0	0	0			REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	504.2811584472656	2	504.279649	1006.54475	0.13162	6.6372E-05	2.8733	0.0014489	3.0049	0.0015153	504.2808011091861	93.739	2.7312	93.616	92.341	95.072	-0.12215					104	63	3	0	0	0	0.26966	1	11563	11563		79.713	2.9384	1	901480	+		88303	20952	61410	61512	98252	98252					0.04173456443231771
VTFLLRSGD	9	Unmodified	_VTFLLRSGD_					0	0	0			REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.2811584472656	2	504.279649	1006.54475	-0.30184	-0.00015221	3.3001	0.0016642	2.9983	0.001512	504.2809595356731	93.777	4.1055	93.63	91.697	95.803	-0.14771					143	95	3	0	0	0	0.19099	1	11548	11548		90.37	10.919	1	1000800	+		88304	20952	61410	61512	98253	98253					0.04173456443231771
VTFLLRSGD	9	Unmodified	_VTFLLRSGD_					0	0	0			REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	REV__nc|ENSG00000094914|Q9NRG9-2|AAAS	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	504.279649	1006.54475	-0.30184	-0.00015221	3.3001	0.0016642	2.9983	0.001512	504.2809595356731	93.777	4.1055	93.63	91.697	95.803	-0.14771	0.0066324	0.00021856	NaN	90.37	143	95	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1000800	+		88305	20952	61410	61512							0.04173456443231771
VTFLQAKQI	9	Unmodified	_VTFLQAKQI_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000484989.1_1_13:25026542-25029254:-|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.306396484375	2	524.313492	1046.61243	-0.21638	-0.00011345	0.038222	2.004E-05	-0.17816	-9.3412E-05	524.3135429405381	73.249	2.0368	73.258	72.818	74.854	0.0096512					141	49	5	0	0	0	0.67687	1	8942	8942		47.657	5.2612	1	36374000			88306	2420	61411	61513	98254	98254					0.09098906374038052
VTFLSHCQT	9	Unmodified	_VTFLSHCQT_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	518.250034	1034.48552	-0.5381	-0.00027887	-3.4716	-0.0017992	-4.0097	-0.002078	518.7480240604802	44.802	0.20082	44.55	44.429	44.63	-0.25252					6	4	2	0	0	0	0.024511	1	4176	4176		25.574	7.2496	1	47801			88307	10569	61412	61514	98255	98255					-0.030347628425943185
VTFPDIIRNY	10	Unmodified	_VTFPDIIRNY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8313598632812	2	619.332413	1236.65027	-0.16653	-0.00010314	-0.56789	-0.00035171	-0.73442	-0.00045485	619.3319595571509	74.175	0.83213	73.898	73.645	74.478	-0.2769					39	23	2	0	0	0	0.1169	4	8727	8725;8727;8733;8744		131.62	75.182	1	1597800			88308	3443	61413	61515	98256;98257;98258;98259	98257					0.04141372568847146
VTFPDIIRNY	10	Unmodified	_VTFPDIIRNY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.3303833007812	2	619.332413	1236.65027	-0.72944	-0.00045176	0.19611	0.00012145	-0.53333	-0.00033031	619.332273988282	74.173	0.91466	73.908	73.445	74.36	-0.26479					51	23	3	0	0	0	0.31896	2	8745	8745;8755		107.01	50.574	1	1046600			88309	3443	61413	61515	98260;98261	98260					0.04141372568847146
VTFPDIIRNY	10	Unmodified	_VTFPDIIRNY_					0	0	0		ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1	ENSG00000115415|ENST00000361099|STAT1	ENSG00000115415|ENST00000361099|STAT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.3330078125	2	619.332413	1236.65027	0.19772	0.00012245	-0.84521	-0.00052347	-0.64749	-0.00040101	619.3318319802081	73.907	0.94343	73.717	73.316	74.259	-0.19027					45	24	2	0	0	0	0.37307	2	8689	8689;8708		101.46	48.523	1	913040			88310	3443	61413	61515	98262;98263	98262					0.04141372568847146
VTFQQNKN	8	Unmodified	_VTFQQNKN_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.77752685546875	2	489.753798	977.493044	0.56098	0.00027474	-0.72278	-0.00035398	-0.1618	-7.9243E-05	489.7533015600643	51.342	0.60926	51.23	50.973	51.583	-0.11163					41	15	4	0	0	0	0.027866	1	5250	5250		55.504	11.387	1	1635600			88311	8178	61414	61516	98264	98264					0.0033971274932582674
VTFRPLFF	8	Unmodified	_VTFRPLFF_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.7911376953125	2	513.792195	1025.56984	0.27521	0.0001414	-0.5635	-0.00028952	-0.28829	-0.00014812	513.7918244681499	80.129	1.2071	79.883	79.153	80.36	-0.2465					49	28	3	0	0	0	0.6248	2	9587	9587;9599		73.975	22.639	1	488390			88312	3726	61415	61517	98265;98266	98265					0.05807556036461392
VTFRPLFF	8	Unmodified	_VTFRPLFF_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.7900390625	2	513.792195	1025.56984	0.22641	0.00011633	-0.43621	-0.00022412	-0.2098	-0.00010779	513.7918489564331	80.117	0.71233	79.899	79.619	80.331	-0.21797					42	16	3	0	0	0	0.6248	1	9601	9601		73.975	26.059	1	467800			88313	3726	61415	61517	98267	98267					0.05807556036461392
VTFRPLFF	8	Unmodified	_VTFRPLFF_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.7900390625	2	513.792195	1025.56984	0.057528	2.9557E-05	-0.40128	-0.00020618	-0.34376	-0.00017662	513.7919105721815	80.008	0.79214	79.862	79.492	80.284	-0.146					43	18	4	0	0	0	0.39824	1	9573	9573		97.473	17.533	1	417320			88314	3726	61415	61517	98268	98268					0.05807556036461392
VTFRVLFY	8	Unmodified	_VTFRVLFY_					0	0	0			REV__ENSG00000185432|ENST00000332160|METTL7A	REV__ENSG00000185432|ENST00000332160|METTL7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.75830078125	2	522.797478	1043.5804	-0.77742	-0.00040643	-1.3962	-0.0007299	-2.1736	-0.0011363	522.7966722989232	40.986	0.91429	40.756	40.52	41.434	-0.2303					43	23	2	0	0	0	0.027866	1	3640	3640		50.025	11.218	1	218590	+		88315	27762	61416	61518	98269	98269					0.060355386908895525
VTFRVPESD	9	Unmodified	_VTFRVPESD_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.2955322265625	2	525.266739	1048.51892	-0.56065	-0.00029449	0.12488	6.5596E-05	-0.43577	-0.0002289	525.2664287495066	44.892	0.61987	44.681	44.436	45.056	-0.21109					26	15	2	0	0	0	0.024511	1	4176	4176		25.574	9.9322	1	272090	+		88316	25462	61417	61519	98270	98270					-0.00339437799038933
VTFSLTFW	8	Unmodified	_VTFSLTFW_					0	0	0			REV__ENST00000585357.1_1_19:38780610-38781349:+|nuORF	REV__ENST00000585357.1_1_19:38780610-38781349:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2783508300781	2	500.760561	999.506569	0.23677	0.00011857	-1.3689	-0.00068547	-1.1321	-0.00056691	500.76009409110736	61.377	1.1948	61.449	60.831	62.026	0.071129					82	31	4	0	0	0	0.027866	1	6928	6928		33.516	0	1	4416000	+		88317	35570	61418	61520	98271	98271					0.00679570528552631
VTFVCTEYI	9	Carbamidomethyl (C)	_VTFVC(Carbamidomethyl (C))TEYI_	VTFVC(1)TEYI		VTFVC(77)TEYI		0	1	0		ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.2713623046875	2	566.273175	1130.5318	-0.29915	-0.0001694	-2.2226	-0.0012586	-2.5218	-0.001428	566.2721045457445	96.303	2.4519	96.147	95.313	97.765	-0.15646					86	55	4	0	0	0	0.29104	2	11876	11876;11887		76.847	10.417	1	1015900			88318	10012	61419	61521	98272;98273	98272	139				-0.028247427311725914
VTFYWLVI	8	Unmodified	_VTFYWLVI_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	520.766357421875	2	520.794404	1039.57425	0.10386	5.4089E-05	2.044	0.0010645	2.1479	0.0011186	520.7958876909654	47.771	0.18348	47.495	47.344	47.527	-0.27598					9	4	3	0	0	0	0.027866	1	4656	4656		65.897	15.873	1	201450			88319	18408	61420	61522	98274	98274					0.0560502045937028
VTGDESGTII	10	Unmodified	_VTGDESGTII_					0	0	0			REV__ENSG00000184432|ENST00000333188|COPB2	REV__ENSG00000184432|ENST00000333188|COPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	496.26763916015625	2	496.250754	990.486955	0.41373	0.00020531	-0.13207	-6.5541E-05	0.28166	0.00013977	496.2505540074344	39.357	0.44657	39.357	39.148	39.594	0					25	12	3	0	0	0	0.03519	1	3395	3395		21.96	10.449	1	770310	+		88320	27668	61421	61523	98275	98275					-0.008668502728369276
VTGEKEAAPG	10	Unmodified	_VTGEKEAAPG_					0	0	0			REV__ENST00000531150.5_1_1:26508531-26510633:+|nuORF	REV__ENST00000531150.5_1_1:26508531-26510633:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.7355651855469	2	479.745639	957.476725	1.3885	0.00066615	3.151	0.0015117	4.5396	0.0021778	479.74731803779616	59.965	0.22368	59.768	59.651	59.874	-0.19742					7	5	2	0	0	0	0.03519	1	6636	6636		69.628	8.6557	1	112520	+		88321	24176	61422	61524	98276	98276					-0.003714132074264853
VTGETDGHMV	10	Unmodified	_VTGETDGHMV_					0	0	0			REV__EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	REV__EHD2|p.G412Afs*35|1|0.14|ENSG00000024422|chr19:47741030-47741030|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7583618164062	2	523.234581	1044.45461	-0.6863	-0.0003591	4.0005	0.0020932	3.3142	0.0017341	523.2362576619036	40.836	0.71555	40.7	40.345	41.06	-0.13554					33	18	3	0	0	0	0.03519	1	3612	3612		45.952	0	1	590230	+		88322	19735	61423	61525	98277	98277					-0.06583960947477863
VTGHNCMICL	10	Unmodified	_VTGHNCMICL_					0	0	0			REV__ENST00000485560.5_3_10:38146171-38146261:-|nuORF	REV__ENST00000485560.5_3_10:38146171-38146261:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.810791015625	2	545.745747	1089.47694	-0.18055	-9.8535E-05	4.4593	0.0024336	4.2787	0.0023351	545.7486696142003	70.414	0.49103	70.157	69.684	70.175	-0.25713					15	11	2	0	0	0	0.03519	1	8163	8163		36.447	17.087	1	237570	+		88323	33563	61424	61526	98278	98278					-0.06421776075080743
VTGKFRGGV	9	Unmodified	_VTGKFRGGV_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8;ENST00000529480.1_1_11:57457792-57467500:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.7503967285156	2	460.769252	919.52395	-0.70862	-0.00032651	0.17328	7.9842E-05	-0.53534	-0.00024667	460.76918795528445	38.257	0.61279	38.174	37.918	38.531	-0.082512					27	16	2	0	0	0	0.024457	1	3147	3147		37.159	15.199	1	479440			88324	2095	61425	61527	98279	98279					0.060969108542508366
VTGKKDSRRSD	11	Unmodified	_VTGKKDSRRSD_					0	0	0		ENST00000483413.1_1_10:119798481-119799811:-|nuORF;ENSG00000107560|ENST00000355624|RAB11FIP2;nc|ENSG00000107560|Q7L804-2|RAB11FIP2	ENST00000483413.1_1_10:119798481-119799811:-|nuORF	ENST00000483413.1_1_10:119798481-119799811:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	416.8949279785156	3	416.893347	1247.65821	0.13146	5.4803E-05	-2.1603	-0.0009006	-2.0288	-0.00084579	417.22640988903834	30.376	1.3833	30.226	29.626	31.009	-0.14952					61	32	3	0	0	0	0.98625	1	1915	1915		39.873	1.1195	1	2127100			88325	2843	61426	61528	98280	98280					0.04428899818321952
VTGKLFLRS	9	Unmodified	_VTGKLFLRS_					0	0	0		ENST00000258383.3_1_2:224824265-224824352:+|nuORF	ENST00000258383.3_1_2:224824265-224824352:+|nuORF	ENST00000258383.3_1_2:224824265-224824352:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.2910461425781	2	510.813659	1019.61277	-0.6093	-0.00031124	0.59543	0.00030415	-0.013874	-7.0869E-06	510.81379799662625	57.315	0.49059	57.411	57.051	57.541	0.095306					20	12	3	0	0	0	0.024374	1	6367	6367		13.454	0	1	491700			88326	11419	61427	61529	98281	98281					0.10374326093904074
VTGLLKTQ	8	Unmodified	_VTGLLKTQ_					0	0	0			REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	430.2662048339844	2	430.26601	858.517468	2.3768	0.0010227	-2.3235	-0.00099972	0.053309	2.2937E-05	430.2648983943194	24.142	1.0522	23.961	23.715	24.767	-0.18089					41	23	2	0	0	0	0.95679	1	1039	1039		44.117	0	1	915990	+		88327	26232	61428	61530	98282	98282					0.08254972902852842
VTGLLTWID	9	Unmodified	_VTGLLTWID_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.29205322265625	2	509.2844	1016.55425	-0.28545	-0.00014537	-1.5654	-0.00079724	-1.8509	-0.00094262	509.2834597022725	64.446	0.82684	64.244	63.911	64.738	-0.20254					40	20	3	0	0	0	0.024294	1	7352	7352		45.952	0	1	944610	+		88328	24316	61429	61531	98283	98283					0.04663224728756177
VTGLMSLLLP	10	Unmodified	_VTGLMSLLLP_					0	0	0			REV__ENSG00000204345|ENST00000375352|CD300LD	REV__ENSG00000204345|ENST00000375352|CD300LD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.7583618164062	2	522.312103	1042.60965	-0.089924	-4.6968E-05	3.9141	0.0020444	3.8242	0.0019974	522.314082108899	41.326	0.70614	41.099	40.767	41.474	-0.2278					41	17	3	0	0	0	0.03519	1	3629	3629		55.504	0	1	1680000	+		88329	28594	61430	61532	98284	98284					0.0900531492486607
VTGLTVLVPP	10	Unmodified	_VTGLTVLVPP_					0	0	0		ENST00000459718.1_1_3:118644864-118649075:-|nuORF;nc|ENSG00000144847|Q5DX21-3|IGSF11;nc|ENSG00000144847|Q5DX21-2|IGSF11;ENSG00000144847|ENST00000393775|IGSF11	ENST00000459718.1_1_3:118644864-118649075:-|nuORF	ENST00000459718.1_1_3:118644864-118649075:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.28741455078125	2	498.310418	994.606283	0.80647	0.00040187	-0.54341	-0.00027079	0.26305	0.00013108	498.30986885597486	59.564	0.66169	59.364	59.099	59.761	-0.20016					39	17	3	0	0	0	0.03519	1	6812	6812		37.159	24.952	1	1050200			88330	5776	61431	61533	98285	98285					0.10876388142526139
VTGNIKHIV	9	Unmodified	_VTGNIKHIV_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MSMS	OPSCC_40_ClassI_Rep-3	6	490.7981262207031	2	490.798009	979.581465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.711	1	19.477	18.977	19.977	-0.23345								0	0	0	0.53756	1	431	431		47.916	5.5195	1		+		88331	26916	61432	61534	98286	98286					0.09085753059798662
VTGNLIIITL	10	Unmodified	_VTGNLIIITL_					0	0	0		ENSG00000187857|ENST00000641576|OR6C75	ENSG00000187857|ENST00000641576|OR6C75	ENSG00000187857|ENST00000641576|OR6C75	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	528.8187255859375	2	528.8368	1055.65905	-0.34155	-0.00018062	0.65208	0.00034485	0.31053	0.00016422	528.8361102430923	70.328	0.20197	70.056	69.953	70.155	-0.27185					6	4	2	0	0	0	0.03519	1	8174	8174		9.7057	0	1	62436			88332	9669	61433	61535	98287	98287					0.13344346205326474
VTGQEVIMAGL	11	Unmodified	_VTGQEVIMAGL_					0	0	0			REV__nc|ENSG00000124222|O14662-6|STX16	REV__nc|ENSG00000124222|O14662-6|STX16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2882080078125	2	559.299724	1116.5849	0.49283	0.00027564	-4.0615	-0.0022716	-3.5687	-0.001996	559.2973258571134	50.918	0.52882	50.807	50.6	51.129	-0.11163					28	13	3	0	0	0	0.024747	1	5238	5238		31.53	0	1	715780	+		88333	22752	61434	61536	98288	98288					0.03126635051489757
VTGRAVFD	8	Unmodified	_VTGRAVFD_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	432.7315979003906	2	432.732335	863.450116	0.94554	0.00040916	-2.2002	-0.00095211	-1.2547	-0.00054294	432.7313165592402	98.51	1.8019	98.507	97.893	99.695	-0.0026855					100	41	3	0	0	0	1.0009	1	12507	12507		37.159	1.9584	1	3032200	+		88334	25256	61435	61537	98289	98289					0.012929426918958598
VTGRAVFD	8	Unmodified	_VTGRAVFD_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	432.7320251464844	2	432.732335	863.450116	1.1632	0.00050335	-1.9665	-0.00085099	-0.80336	-0.00034764	432.7312915054073	99.078	2.4922	98.954	97.371	99.863	-0.12459					146	62	4	0	0	0	1.0198	1	12316	12316		34.173	0.65696	1	1722000	+		88335	25256	61435	61537	98290	98290					0.012929426918958598
VTGRFGPLL	9	Unmodified	_VTGRFGPLL_					0	0	0			REV__ENST00000330720.6_1_19:48886304-48886466:-|nuORF	REV__ENST00000330720.6_1_19:48886304-48886466:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.2882385253906	2	480.287277	958.560001	0.10248	4.922E-05	0.98198	0.00047163	1.0845	0.00052085	480.2880112423214	66.129	0.69138	65.856	65.568	66.26	-0.27282					54	17	4	0	0	0	0.29158	1	7813	7813		76.774	13.468	1	7446300	+		88336	30464	61436	61538	98291	98291					0.07906368031103739
VTGRRALLA	9	Unmodified	_VTGRRALLA_					0	0	0			REV__ENSG00000076826|ENST00000160298|CAMSAP3	REV__ENSG00000076826|ENST00000160298|CAMSAP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.8002624511719	2	478.803626	955.592698	0.75451	0.00036126	-0.78646	-0.00037656	-0.031954	-1.53E-05	478.80311401338986	22.076	0.47058	21.887	21.676	22.147	-0.18894					16	9	2	0	0	0	0.024323	1	750	750		44.117	0	1	66150	+		88337	20573	61437	61539	98292	98292					0.11312575153942817
VTGRWRWRLL	10	Unmodified	_VTGRWRWRLL_					0	0	0		ENST00000456128.5_3_22:35695841-35695913:+|nuORF	ENST00000456128.5_3_22:35695841-35695913:+|nuORF	ENST00000456128.5_3_22:35695841-35695913:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	447.7376708984375	3	448.266679	1341.77821	0.36276	0.00016261	-4.3661	-0.0019572	-4.0034	-0.0017946	448.2657813835384	41.818	0.6884	41.818	41.432	42.12	0					61	19	5	0	0	0	0.03519	1	3736	3736		17.468	0	1	786850			88338	14593	61438	61540	98293	98293					0.12098977673417721
VTGVGFYMPM	10	Unmodified	_VTGVGFYMPM_					0	0	0		nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F;FAM83F|p.R320Gfs*33|1|0.24|ENSG00000133477|chr22:40021465-40021534|GCTCGAAAGCTTATCAACCCCAAGTACGCCTTGGTGTCAGGCTGCCGCCACCCGCCTGGGGAGATGATGC/-|frameshift_variant	nc|ENSG00000133477|Q8NEG4-2|FAM83F	nc|ENSG00000133477|Q8NEG4-2|FAM83F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.306884765625	2	551.259013	1100.50347	-0.43348	-0.00023896	-3.1382	-0.0017299	-3.5716	-0.0019689	551.2569836238388	52.323	0.85314	52.415	52.16	53.013	0.091938					36	21	3	0	0	0	0.03519	1	5513	5513		37.159	0	1	392020			88339	4712	61439	61541	98294	98294					-0.042757639120964086
VTGVKFRT	8	Unmodified	_VTGVKFRT_					0	0	0		ENST00000571855.1_1_17:48740997-48741507:+|nuORF;ENST00000515070.1_1_17:48741105-48741487:+|nuORF;nc|ENSG00000108846|O15438-5|ABCC3;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3	ENST00000571855.1_1_17:48740997-48741507:+|nuORF;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENST00000502426.5_1_17:48736553-48755440:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.2818908691406	2	454.271627	906.528701	-1.0021	-0.00045522	1.2568	0.00057093	0.25472	0.00011571	454.272036896205	49.447	0.45134	49.521	49.352	49.804	0.074196					21	11	2	0	0	0	0.027866	1	5022	5022		10.866	7.9361	1	173870			88340	17049;15668	61440	61542	98295	98295					0.0716979499700301
VTGVKKQRL	9	Unmodified	_VTGVKKQRL_					0	0	0		chr1:43538277-43553492|160|14.36|0.33|5.42|+|2|PTPRF,PTPRF|1	chr1:43538277-43553492|160|14.36|0.33|5.42|+|2|PTPRF,PTPRF|1	chr1:43538277-43553492|160|14.36|0.33|5.42|+|2|PTPRF,PTPRF|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	515.7091674804688	2	514.832383	1027.65021	-0.11788	-6.0687E-05	3.8583	0.0019864	3.7404	0.0019257	514.8341612453287	29.809	0.71923	29.659	29.337	30.056	-0.14952					45	16	4	0	0	0	0.024541	1	1851	1851		11.511	0.64546	1	594550			88341	292	61441	61543	98296	98296					0.13749417359508698
VTHDIPIKV	9	Unmodified	_VTHDIPIKV_					0	0	0		nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1	nc|ENSG00000136273|O60921-2|HUS1	nc|ENSG00000136273|O60921-2|HUS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3055419921875	2	511.305667	1020.59678	-0.37038	-0.00018938	-0.30313	-0.00015499	-0.67352	-0.00034437	511.305459622028	66.032	1.0057	66.062	65.382	66.388	0.030106					74	28	4	0	0	0	0.25032	1	7743	7743		82.305	0.064519	1	15087000			88342	5005	61442	61544	98297	98297					0.08730619856999056
VTHFCWQRNGH	11	Unmodified	_VTHFCWQRNGH_					0	0	0			REV__ENST00000597060.1_1:2121284-2121554:+|nuORF	REV__ENST00000597060.1_1:2121284-2121554:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	461.75909423828125	3	462.215767	1383.62547	0.049851	2.3042E-05	-3.944	-0.001823	-3.8941	-0.0017999	462.2138967257842	36.141	1.1111	36.179	35.61	36.721	0.038044					54	30	2	0	0	0	0.024759	1	2863	2863		23.378	0	1	163460	+		88343	35799	61443	61545	98298	98298					-0.05099585785524141
VTHIKKHRT	9	Unmodified	_VTHIKKHRT_					0	0	0			REV__ENSG00000234444|ENST00000423484|ZNF736	REV__ENSG00000234444|ENST00000423484|ZNF736	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2798461914062	2	560.340907	1118.66726	0.68788	0.00038544	-4.1518	-0.0023264	-3.4639	-0.001941	560.8387198282454	85.918	0.3448	85.769	85.575	85.92	-0.14967					10	7	2	0	0	0	0.024541	1	10434	10434		17.365	0.89182	1	48495	+		88344	28915	61444	61546	98299	98299					0.11267337965318802
VTHLLALHA	9	Unmodified	_VTHLLALHA_					0	0	0		nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;nc|ENSG00000165271|Q9H6R4-3|NOL6	nc|ENSG00000165271|Q9H6R4-2|NOL6	nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.7918395996094	2	487.792727	973.5709	0.62547	0.0003051	-2.6627	-0.0012989	-2.0373	-0.00099376	487.79150646184695	96.915	0.93105	96.914	96.572	97.503	-3.0518E-05					42	20	3	0	0	0	0.67308	1	12320	12320		47.916	3.7988	1	531480			88345	7388	61445	61547	98300	98300					0.0830577040536582
VTHLPVGVTV	10	Unmodified	_VTHLPVGVTV_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.306396484375	2	511.305667	1020.59678	-0.21139	-0.00010808	-0.35487	-0.00018145	-0.56626	-0.00028953	511.3054507063064	66.245	0.89368	65.963	65.387	66.281	-0.28148					66	23	4	0	0	0	0.57825	3	7873	7831;7873;7887		79.451	12.066	1	13220000			88346	1472	61446	61548	98301;98302;98303	98302					0.08730619857010424
VTHMCPVVI	9	Unmodified	_VTHMCPVVI_					0	0	0		ENST00000246151.8_1_1:24114355-24114448:+|nuORF	ENST00000246151.8_1_1:24114355-24114448:+|nuORF	ENST00000246151.8_1_1:24114355-24114448:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3063049316406	2	499.761723	997.508894	-0.43341	-0.0002166	1.3994	0.00069939	0.96604	0.00048279	499.7624486242652	94.153	0.43039	94.005	93.738	94.169	-0.14771					13	9	2	0	0	0	0.024325	1	11584	11584		40.573	16.37	1	55019			88347	11320	61447	61549	98304	98304					0.010039596703677489
VTHMCPVVI	9	Unmodified	_VTHMCPVVI_					0	0	0		ENST00000246151.8_1_1:24114355-24114448:+|nuORF	ENST00000246151.8_1_1:24114355-24114448:+|nuORF	ENST00000246151.8_1_1:24114355-24114448:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	499.761723	997.508894	0.1732	8.656E-05	0.35825	0.00017904	0.53145	0.0002656	499.7617268340868	94.263	0.31367	94.263	94.088	94.402	0	0.18786	-0.00061781	NaN	40.573	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87676			88348	11320	61447	61549							0.010039596703677489
VTHNRLQTL	9	Unmodified	_VTHNRLQTL_					0	0	0		ENST00000524486.5_1_11:803168-803522:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	ENST00000524486.5_1_11:803168-803522:-|nuORF	ENST00000524486.5_1_11:803168-803522:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	541.2928466796875	2	541.309272	1080.60399	0.47676	0.00025807	1.2403	0.00067139	1.7171	0.00092947	541.3086498510712	59.342	0.15049	59.342	59.257	59.408	0					5	3	2	0	0	0	0.024367	1	6770	6770		36.447	3.6343	1	92321			88349	8754	61448	61550	98305	98305					0.06691352457414723
VTHPVRKC	8	Unmodified	_VTHPVRKC_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-5|CEP70	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.263427734375	2	470.263279	938.512005	0.033106	1.5568E-05	1.0987	0.00051667	1.1318	0.00053224	470.2637665480187	62.652	0.30938	62.431	62.237	62.547	-0.22097					15	9	2	0	0	0	1.0574	1	7057	7057		12.959	3.4886	1	2102700	+		88350	22104	61449	61551	98306	98306					0.04028970839385693
VTIARPKDL	9	Unmodified	_VTIARPKDL_					0	0	0			REV__ENSG00000123384|ENST00000243077|LRP1	REV__ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.27764892578125	2	506.811116	1011.60768	-0.55626	-0.00028192	-1.7477	-0.00088574	-2.3039	-0.0011677	506.81109513106367	56.846	1.1491	56.682	56.129	57.278	-0.16431					69	31	5	0	0	0	0.022832	1	6416	6416		82.241	0	1	3136100	+		88351	22693	61450	61552	98307	98307					0.10234022231270501
VTIDKLIQ	8	Unmodified	_VTIDKLIQ_					0	0	0			REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	465.2875671386719	2	465.286943	928.559333	0.91711	0.00042672	-1.445	-0.00067235	-0.52792	-0.00024563	465.2864021780938	75.372	1.8424	75.382	74.973	76.815	0.010376					162	47	6	0	0	0	0.25561	1	9211	9211		131.03	0	1	105790000	+		88352	21712	61451	61553	98308	98308					0.09219528591370363
VTIDKLIQ	8	Unmodified	_VTIDKLIQ_					0	0	0			REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.2866516113281	2	465.286943	928.559333	-0.12485	-5.809E-05	-1.0831	-0.00050394	-1.2079	-0.00056203	465.2868143855361	75.593	2.1848	75.32	74.807	76.992	-0.27266					169	53	6	0	0	0	0.28409	1	8941	8941		118.74	0	1	104440000	+		88353	21712	61451	61553	98309	98309					0.09219528591370363
VTIDKLIQ	8	Unmodified	_VTIDKLIQ_					0	0	0			REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.28680419921875	2	465.286943	928.559333	-0.23241	-0.00010814	-1.0854	-0.00050504	-1.3178	-0.00061317	465.2868513981878	75.517	2.1571	75.259	74.779	76.936	-0.25865					181	52	6	0	0	0	0.11183	2	8921	8921;9039		157.33	0	1	126510000	+		88354	21712	61451	61553	98310;98311	98310					0.09219528591370363
VTIDKLSNL	9	Unmodified	_VTIDKLSNL_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.78277587890625	2	501.795132	1001.57571	-0.31268	-0.0001569	-0.18056	-9.0602E-05	-0.49324	-0.00024751	501.7948001212002	45.348	0.81508	45.348	44.898	45.714	0					28	23	2	0	0	0	0.018983	1	4371	4371		104.75	11.551	1	293490	+		88355	28706	61452	61554	98312	98312					0.07498609757453778
VTIGGGGPAR	10	Unmodified	_VTIGGGGPAR_					0	0	0		ENST00000377877.4_1_9:36372514-36400652:-|nuORF	ENST00000377877.4_1_9:36372514-36400652:-|nuORF	ENST00000377877.4_1_9:36372514-36400652:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	443.2795715332031	2	442.751059	883.487565	1.0735	0.00047527	2.125	0.00094085	3.1985	0.0014161	442.7519455215334	54.821	0.18394	54.615	54.538	54.722	-0.20613					6	4	2	0	0	0	0.03519	1	5836	5836		34.173	0	1	49148			88356	13218	61453	61555	98313	98313					0.0411603395750717
VTIGGVTIID	10	Unmodified	_VTIGGVTIID_					0	0	0			REV__nc|ENSG00000143839|P00797-2|REN	REV__nc|ENSG00000143839|P00797-2|REN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.76361083984375	2	494.289682	986.564812	0.33061	0.00016342	-0.17626	-8.7125E-05	0.15435	7.6293E-05	494.28956205127815	74.787	0.83768	74.528	73.986	74.824	-0.25887					35	19	2	0	0	0	0.03519	1	9091	9091		45.972	0	1	188470	+		88357	36741	61454	61556	98314	98314					0.07099207383191697
VTIHLRDI	8	Unmodified	_VTIHLRDI_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	483.2192687988281	2	483.790184	965.565815	0.21359	0.00010333	0.066437	3.2141E-05	0.28003	0.00013547	483.78975858531123	32.225	0.51789	31.989	31.74	32.258	-0.23667					18	11	2	0	0	0	0.027866	1	2228	2228		37.159	12.956	1	130710			88358	1527	61455	61557	98315	98315					0.08165466542754984
VTIKELDLY	9	Unmodified	_VTIKELDLY_					0	0	0		nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;NFIX-RALGPS1|2|fusion;NFIX-RALGPS1|3|fusion;NFIX-RALGPS1|4|fusion;NFIX-RALGPS1|1|fusion	nc|ENSG00000008441|Q14938-5|NFIX	nc|ENSG00000008441|Q14938-5|NFIX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.310546875	2	547.310615	1092.60668	-0.092686	-5.0728E-05	-0.51296	-0.00028075	-0.60564	-0.00033147	547.3102698258109	63.806	1.028	63.548	63.239	64.267	-0.25824					98	26	6	0	0	0	0.1158	1	7215	7215		107.01	0	1	15460000			88359	847	61456	61558	98316	98316					0.06407763071729278
VTINNKVI	8	Unmodified	_VTINNKVI_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.7792663574219	2	450.779285	899.544017	-0.43458	-0.0001959	-0.12822	-5.78E-05	-0.5628	-0.0002537	450.77917080274807	54.208	1.3243	54.072	53.808	55.132	-0.13617					88	37	4	0	0	0	0.46709	1	5766	5766		88.643	3.7273	1	9639200			88360	1736	61457	61559	98317	98317					0.09022661794188025
VTINWTVES	9	Unmodified	_VTINWTVES_					0	0	0			REV__ENSG00000127241|ENST00000296280|MASP1	REV__ENSG00000127241|ENST00000296280|MASP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	525.2849731445312	2	524.769114	1047.52368	-0.22197	-0.00011648	3.6905	0.0019367	3.4685	0.0018202	524.7705229106567	54.798	0.71062	54.896	54.66	55.371	0.098015					37	19	3	0	0	0	0.024405	1	5996	5996		27.882	0	1	674940	+		88361	22922	61458	61560	98318	98318					0.001814463437312952
VTIPEPLVLY	10	Unmodified	_VTIPEPLVLY_					0	0	0			REV__ENST00000442250.5_1_2:173338809-173338884:+|nuORF	REV__ENST00000442250.5_1_2:173338809-173338884:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.28759765625	2	572.336633	1142.65871	0.17434	9.978E-05	-0.31873	-0.00018242	-0.14439	-8.264E-05	572.336085145164	52.789	0.51569	52.53	52.287	52.803	-0.25838					27	12	3	0	0	0	0.03519	1	5524	5524		68.787	7.8149	1	527030	+		88362	32557	61459	61561	98319	98319					0.09308926485459779
VTIQLAQKV	9	Unmodified	_VTIQLAQKV_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.3131408691406	2	500.313492	998.612431	-0.086198	-4.3126E-05	-0.4775	-0.0002389	-0.56369	-0.00028202	500.3133262987503	76.254	1.3695	76.002	75.603	76.972	-0.25162					118	33	6	0	0	0	0.5973	1	9139	9139		52.937	3.4007	1	46244000			88363	7647	61460	61562	98320	98320					0.11306906374045411
VTIRLLETI	9	Unmodified	_VTIRLLETI_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.3334350585938	2	529.334424	1056.6543	-0.38037	-0.00020134	-0.32651	-0.00017283	-0.70688	-0.00037417	529.334307832191	73.124	0.76344	72.934	72.632	73.396	-0.19027					47	18	4	0	0	0	0.18994	1	8566	8566		90.601	10.662	1	2025800			88364	1155	61461	61563	98321	98321					0.12823462062578983
VTISADDKDD	10	Unmodified	_VTISADDKDD_					0	0	0		ENSG00000140937|ENST00000268603|CDH11;nc|ENSG00000140937|P55287-2|CDH11;ENST00000569095.1_1_16:65002436-65005938:-|nuORF	ENSG00000140937|ENST00000268603|CDH11	ENSG00000140937|ENST00000268603|CDH11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7672119140625	2	539.748576	1077.4826	-1.5651	-0.00084477	-2.6042	-0.0014056	-4.1693	-0.0022504	539.7470996236946	27.317	0.40137	27.398	27.282	27.684	0.081293					14	10	2	0	0	0	0.03519	1	1456	1456		31.53	0	1	71464			88365	5451	61462	61564	98322	98322					-0.05304359486422072
VTISASLVAK	10	Unmodified	_VTISASLVAK_					0	0	0		ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	ENSG00000166448|ENST00000339375|TMEM130	ENSG00000166448|ENST00000339375|TMEM130	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.8066711425781	2	494.8055	987.596446	-0.048396	-2.3947E-05	-0.54293	-0.00026864	-0.59132	-0.00029259	494.8050962965184	81.876	1.3308	81.876	81.548	82.878	0					66	31	3	0	0	0	1.0122	1	10216	10216		44.377	1.9027	1	1623200			88366	7564	61463	61565	98323	98323					0.10215200137133706
VTISKITL	8	Unmodified	_VTISKITL_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.7535400390625	2	437.784036	873.553519	-0.00034213	-1.4978E-07	-1.0491	-0.00045929	-1.0495	-0.00045944	437.7835642879884	49.846	0.11261	49.567	49.472	49.584	-0.27977					4	2	2	0	0	0	0.027866	1	5008	5008		37.159	0	1	53328	+		88367	22289	61464	61566	98324	98324					0.1116843007970374
VTISVKSKK	9	Unmodified	_VTISVKSKK_					0	0	0			REV__ENST00000560957.1_1_15:86225432-86228206:+|nuORF	REV__ENST00000560957.1_1_15:86225432-86228206:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28656005859375	2	495.321317	988.628081	0.2077	0.00010288	-0.78823	-0.00039043	-0.58053	-0.00028755	495.3204104062584	67.171	0.48015	67.171	67.088	67.568	0					18	11	2	0	0	0	0.024427	1	8014	8014		51.335	10.557	1	132040	+		88368	35160	61465	61567	98325	98325					0.13331192891098453
VTITTNLSA	9	Unmodified	_VTITTNLSA_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	460.2584533691406	2	460.258382	918.502212	-0.24897	-0.00011459	0.29759	0.00013697	0.04862	2.2378E-05	460.25856264085667	37.736	1.1098	37.769	37.226	38.336	0.032269					73	30	5	0	0	0	0.16638	1	3055	3055		95.815	8.0609	1	6187500			88369	6073	61466	61568	98326	98326					0.039700613149989294
VTIVADSLK	9	Unmodified	_VTIVADSLK_					0	0	0		ZBTB12|p.S254Qfs*15|1|0.19|ENSG00000204366|chr6:31900546-31900547|-/G|frameshift_variant;ENSG00000204366|ENST00000375527|ZBTB12	ZBTB12|p.S254Qfs*15|1|0.19|ENSG00000204366|chr6:31900546-31900547|-/G|frameshift_variant	ZBTB12|p.S254Qfs*15|1|0.19|ENSG00000204366|chr6:31900546-31900547|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	473.28338623046875	2	473.2844	944.554247	0.05517	2.6111E-05	-1.1292	-0.00053444	-1.0741	-0.00050833	473.2838660836445	75.428	0.4035	75.253	74.986	75.389	-0.17548					21	9	3	0	0	0	0.31037	1	8910	8910		74.255	5.4682	1	822300			88370	10335	61467	61569	98327	98327					0.07975224728761532
VTIVMHIY	8	Unmodified	_VTIVMHIY_					0	0	0		ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.31402587890625	2	488.270238	974.525924	0.33291	0.00016255	-3.2487	-0.0015862	-2.9157	-0.0014237	488.26744691990683	25.452	0.94963	25.281	24.907	25.857	-0.17151					48	22	4	0	0	0	0.027866	1	1170	1170		29.842	0	1	191410			88371	17140	61468	61570	98328	98328					0.03764203547825673
VTKAAGRRLD	10	Unmodified	_VTKAAGRRLD_					0	0	0			REV__nc|ENSG00000090615|Q08378-2|GOLGA3	REV__nc|ENSG00000090615|Q08378-2|GOLGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	543.8196411132812	2	543.822547	1085.63054	-0.91122	-0.00049554	-0.99951	-0.00054355	-1.9107	-0.0010391	543.8204033181283	47.63	2.1834	47.63	47.216	49.399	0					176	63	6	0	0	0	0.99657	1	4821	4821		46.457	0	1	22379000	+		88372	36503	61469	61571	98329	98329					0.09115041348741215
VTKAPCAFLL	10	Unmodified	_VTKAPCAFLL_					0	0	0			REV__ENST00000436054.1_1_9:74920469-74956553:+|nuORF	REV__ENST00000436054.1_1_9:74920469-74956553:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.2796630859375	2	531.804445	1061.59434	-0.16976	-9.0278E-05	-0.22492	-0.00011962	-0.39468	-0.00020989	531.8042637087126	80.904	0.77478	80.697	80.343	81.118	-0.20633					30	18	2	0	0	0	0.03519	1	9750	9750		45.972	0.020292	1	412960	+		88373	32456	61470	61572	98330	98330					0.06600448127665004
VTKEEIPK	8	Unmodified	_VTKEEIPK_					0	0	0			REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	REV__nc|ENSG00000054267|Q4LE39-4|ARID4B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.760009765625	2	472.276575	942.538597	-0.017278	-8.1602E-06	-1.1284	-0.00053291	-1.1457	-0.00054107	472.27588327583055	75.457	0.8708	75.282	74.9	75.771	-0.17548					36	21	2	0	0	0	0.027866	1	8915	8915		26.693	0	1	1036500	+		88374	20186	61471	61573	98331	98331					0.06502938211701803
VTKGKDKSN	9	Unmodified	_VTKGKDKSN_					0	0	0		nc|ENSG00000135838|Q9BXD5-5|NPL;ENST00000463899.5_1_1:182763506-182778416:+|nuORF	nc|ENSG00000135838|Q9BXD5-5|NPL	nc|ENSG00000135838|Q9BXD5-5|NPL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2587585449219	2	488.774731	975.534909	-0.32939	-0.000161	4.2679	0.002086	3.9385	0.001925	488.77559145582046	31.217	0.42546	31.229	30.956	31.382	0.011799					11	9	2	0	0	0	0.023061	1	2020	2020		69.628	0	1	38304			88375	14747	61472	61574	98332	98332					0.04616268437848703
VTKGRSWD	8	Unmodified	_VTKGRSWD_					0	0	0		nc|ENSG00000100196|O43731-2|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	nc|ENSG00000100196|O43731-2|KDELR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.76434326171875	2	474.748516	947.482479	-0.43171	-0.00020496	3.9148	0.0018586	3.4831	0.0016536	474.7502625101806	35.236	2.7771	35.215	33.852	36.629	-0.021763					118	73	2	0	0	0	0.027866	1	2639	2639		44.117	12.162	1	541220			88376	18124	61473	61575	98333	98333					0.006637300948909797
VTKINNVID	9	Unmodified	_VTKINNVID_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.2926330566406	2	508.292756	1014.57096	-0.6134	-0.00031179	-0.067349	-3.4233E-05	-0.68075	-0.00034602	508.292723052814	64.683	1.6496	64.48	63.99	65.64	-0.20254					72	40	2	0	0	0	0.2508	1	7374	7374		82.241	22.122	1	4629600			88377	5672	61474	61576	98334	98334					0.06425725614712974
VTKITLESF	9	Unmodified	_VTKITLESF_					0	0	0		nc|ENSG00000065548|Q8WU90-2|ZC3H15;ENSG00000065548|ENST00000337859|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2996215820312	2	519.297507	1036.58046	-0.43223	-0.00022446	0.3716	0.00019297	-0.060635	-3.1487E-05	519.2973747909543	60.467	0.97739	60.261	59.681	60.658	-0.20599					54	24	4	0	0	0	0.012922	2	6741	6727;6741		172.25	87.333	1	1926800			88378	1309	61475	61577	98335;98336	98336					0.06363493900221329
VTKITLESF	9	Unmodified	_VTKITLESF_					0	0	0		nc|ENSG00000065548|Q8WU90-2|ZC3H15;ENSG00000065548|ENST00000337859|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.2982177734375	2	519.297507	1036.58046	-0.32504	-0.00016879	0.14877	7.7255E-05	-0.17627	-9.1539E-05	519.2972909557419	60.273	0.78403	60.097	59.813	60.597	-0.1761					51	19	4	0	0	0	0.012922	1	6714	6714		172.25	90.008	1	1975400			88379	1309	61475	61577	98337	98337					0.06363493900221329
VTKITLESF	9	Unmodified	_VTKITLESF_					0	0	0		nc|ENSG00000065548|Q8WU90-2|ZC3H15;ENSG00000065548|ENST00000337859|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	nc|ENSG00000065548|Q8WU90-2|ZC3H15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2979736328125	2	519.297507	1036.58046	-0.4182	-0.00021717	0.056345	2.926E-05	-0.36185	-0.00018791	519.2972252244048	60.486	0.75724	60.232	59.94	60.697	-0.25373					52	18	4	0	0	0	0.012922	1	6726	6726		172.25	87.088	1	2046800			88380	1309	61475	61577	98338	98338					0.06363493900221329
VTKKKKKK	8	Unmodified	_VTKKKKKK_					0	0	0		ENSG00000129518|ENST00000250454|EAPP;AluSz6_dup36815|chr15:60362892-60363058:+|3.339432781041445|0.0012375329650786|11.4|522.0|5|2|sense	ENSG00000129518|ENST00000250454|EAPP	ENSG00000129518|ENST00000250454|EAPP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.289794921875	2	494.355494	986.696435	0.27817	0.00013752	4.15	0.0020516	4.4282	0.0021891	494.3568934843353	61.345	0.39054	61.416	61.239	61.63	0.071129					16	9	3	0	0	0	0.027866	1	6992	6992		1.3276	0	1	144500			88381	4354	61476	61578	98339	98339					0.2025548226159799
VTKKTYEIW	9	Unmodified	_VTKKTYEIW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.32470703125	2	584.324057	1166.63356	-1.1142	-0.00065106	0.27516	0.00016078	-0.83905	-0.00049027	584.3240953922957	44.545	0.68924	44.44	44.134	44.823	-0.10468					52	17	4	0	0	0	0.17845	1	4170	4170		93.143	10.393	1	2313200			88382	3129	61477	61579	98340	98340					0.05690871682895704
VTKKTYEIW	9	Unmodified	_VTKKTYEIW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.3240356445312	2	584.324057	1166.63356	-1.4819	-0.00086588	0.69329	0.00040511	-0.78856	-0.00046077	584.3242701641816	44.74	0.80697	44.488	44.212	45.019	-0.25252					59	20	4	0	0	0	0.18994	2	4193	4181;4193		90.601	17.722	1	2497000			88383	3129	61477	61579	98341;98342	98342					0.05690871682895704
VTKKTYEIW	9	Unmodified	_VTKKTYEIW_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.3235473632812	2	584.324057	1166.63356	-1.3491	-0.0007883	0.45097	0.00026351	-0.8981	-0.00052478	584.3242218959398	44.789	0.76681	44.578	44.221	44.988	-0.21109					58	19	4	0	0	0	0.11092	2	4199	4188;4199		108.09	19.554	1	2478500			88384	3129	61477	61579	98343;98344	98344					0.05690871682895704
VTKKVKFF	8	Unmodified	_VTKKVKFF_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	498.7667236328125	2	498.81567	995.616788	-0.20922	-0.00010436	-4.1783	-0.0020842	-4.3875	-0.0021885	498.8132625874489	41.585	0.64529	41.449	41.022	41.668	-0.13553					21	16	2	0	0	0	0.027866	1	3682	3682		53.351	10.877	1	162560	+		88385	22776	61478	61580	98345	98345					0.1188041558760915
VTKLLLDK	8	Unmodified	_VTKLLLDK_					0	0	0		ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ANK2|p.E2298Gfs*7|1|0.08|ENSG00000145362|chr4:113355509-113355510|TG/-|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2	ANK2|p.T2944Nfs*15|1|0.45|ENSG00000145362|chr4:113357444-113357445|-/A|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	464.77545166015625	2	465.305136	928.595718	0.74632	0.00034727	-0.97872	-0.0004554	-0.2324	-0.00010814	465.3044894872369	51.009	0.65045	50.897	50.638	51.288	-0.11163					39	16	4	0	0	0	0.027866	1	5243	5243		15.642	0	1	1776700			88386	5810;87	61479	61581	98346	98346					0.128564054880826
VTKMLVQHE	9	Unmodified	_VTKMLVQHE_					0	0	0			REV__ENSG00000152495|ENST00000282356|CAMK4	REV__ENSG00000152495|ENST00000282356|CAMK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.3192138671875	2	542.794609	1083.57467	0.86287	0.00046836	-3.9537	-0.002146	-3.0908	-0.0016777	542.7921942434822	59.033	0.61045	58.846	58.575	59.186	-0.18705					27	16	2	0	0	0	0.024292	1	6725	6725		40.778	0	1	754180	+		88387	24846	61480	61582	98347	98347					0.036220721169229364
VTKPPRTID	9	Unmodified	_VTKPPRTID_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.2880859375	2	513.800749	1025.58694	-0.1807	-9.2842E-05	0.32808	0.00016857	0.14738	7.5726E-05	513.8007551942112	55.335	0.56036	55.185	55	55.56	-0.15036					26	15	2	0	0	0	0.023417	1	6137	6137		90.777	29.805	1	834760	+		88388	28801	61481	61583	98348	98348					0.07517431851601941
VTKPVDVDGE	10	Unmodified	_VTKPVDVDGE_					0	0	0			REV__ENSG00000167914|ENST00000301659|GSDMA	REV__ENSG00000167914|ENST00000301659|GSDMA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.7935791015625	2	529.771854	1057.52915	-1.274	-0.00067495	4.2087	0.0022296	2.9347	0.0015547	529.773246564187	37.277	0.58482	37.058	36.686	37.271	-0.2195					17	14	2	0	0	0	0.03519	1	2977	2977		37.812	0	1	82727	+		88389	26202	61482	61584	98349	98349					0.002691251355145141
VTKRLALVL	9	Unmodified	_VTKRLALVL_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.79248046875	2	506.847502	1011.68045	-1.1918	-0.00060408	-0.29272	-0.00014837	-1.4846	-0.00075245	506.84695514230043	43.87	0.52974	43.87	43.621	44.151	0					29	14	3	0	0	0	0.022756	1	4189	4189		79.451	0	1	703470	+		88390	20892	61483	61585	98350	98350					0.17507776024683608
VTKRLALVL	9	Unmodified	_VTKRLALVL_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.7922668457031	2	506.847502	1011.68045	-1.1424	-0.00057902	0.84889	0.00043026	-0.29351	-0.00014877	506.84771272762606	44.043	0.65049	43.899	43.675	44.326	-0.14471					43	18	4	0	0	0	0.018368	1	4171	4171		102.77	31.478	1	809240	+		88391	20892	61483	61585	98351	98351					0.17507776024683608
VTKRPPPKWV	10	Unmodified	_VTKRPPPKWV_					0	0	0		nc|ENSG00000124222|O14662-3|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16;ENST00000468590.1_1_20:57227170-57245628:+|nuORF;nc|ENSG00000124222|O14662-6|STX16	nc|ENSG00000124222|O14662-3|STX16	nc|ENSG00000124222|O14662-3|STX16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3665771484375	2	604.369133	1206.72371	0.12428	7.5109E-05	-4.1564	-0.002512	-4.0321	-0.0024369	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.1246	1	12877	12877		23.523	10.069	1	4482300			88392	4029	61484	61586	98352	98352					0.12861965801948827
VTKRSKAF	8	Unmodified	_VTKRSKAF_					0	0	0			REV__ENSG00000132016|ENST00000586783|BRME1	REV__ENSG00000132016|ENST00000586783|BRME1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.26898193359375	2	468.784902	935.55525	-0.58035	-0.00027206	-2.7219	-0.001276	-3.3022	-0.001548	468.78387156657953	43.384	0.17952	43.384	43.224	43.404	0					5	4	2	0	0	0	0.027866	1	4037	4037		26.796	9.4311	1	47455	+		88393	23251	61485	61587	98353	98353					0.08489483888320137
VTKSTQNSF	9	Unmodified	_VTKSTQNSF_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.25909423828125	2	506.258914	1010.50327	-0.55705	-0.00028201	0.46074	0.00023325	-0.096312	-4.8759E-05	506.25898884926403	25.514	0.66832	25.287	25.018	25.686	-0.22683					45	15	6	0	0	0	0.01456	3	1229	1207;1217;1229		199.89	91.804	1	2585200			88394	742	61486	61588	98354;98355;98356	98356					-0.0015572431608461557
VTKSTQNSF	9	Unmodified	_VTKSTQNSF_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2587585449219	2	506.258914	1010.50327	-0.30498	-0.0001544	0.033857	1.714E-05	-0.27113	-0.00013726	506.2587982073712	25.271	0.91014	25.1	24.825	25.735	-0.17078					48	21	5	0	0	0	0.012006	3	1180	1169;1180;1194		228.31	102.49	1	2206700			88395	742	61486	61588	98357;98358;98359	98358					-0.0015572431608461557
VTKSYQKNDW	10	Unmodified	_VTKSYQKNDW_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	423.5472717285156	3	423.547177	1267.6197	-0.37469	-0.0001587	0.3588	0.00015197	-0.015882	-6.7268E-06	423.5473065811177	29.291	1.2364	29.118	28.766	30.002	-0.17258					44	28	2	0	0	0	0.92842	1	1783	1783		52.167	15.72	1	1086000			88396	3944	61487	61589	98360	98360					-0.0034040581620047305
VTKSYQKNDW	10	Unmodified	_VTKSYQKNDW_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.5472106933594	3	423.547177	1267.6197	0.037051	1.5693E-05	-0.12634	-5.3509E-05	-0.089284	-3.7816E-05	423.5470760998534	29.229	1.0494	29.079	28.743	29.792	-0.14952					60	24	4	0	0	0	0.99657	1	1750	1750		46.457	3.0382	1	1058700			88397	3944	61487	61589	98361	98361					-0.0034040581620047305
VTKTASAM	8	Oxidation (M)	_VTKTASAM(Oxidation (M))_		VTKTASAM(1)		VTKTASAM(41)	0	0	1		ENSG00000083457|ENST00000263087|ITGAE;ITGAE|p.N825Dfs*5|1|0.08|ENSG00000083457|chr17:3739854-3739855|-/ATCTCAATATGTC|frameshift_variant;ITGAE|p.A430Rfs*14|1|0.44|ENSG00000083457|chr17:3755213-3755213|C/-|frameshift_variant	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.71307373046875	2	412.712753	823.410954	0.36789	0.00015183	0.61644	0.00025441	0.98433	0.00040625	412.7129157271808	73.382	1.2229	73.111	72.354	73.577	-0.27126					74	30	4	0	0	0	0.97924	1	8912	8912		40.573	11.423	1	4914300			88398	1752	61488	61590	98362	98362		63			-0.007815256539743132
VTKTASAM	8	Oxidation (M)	_VTKTASAM(Oxidation (M))_					0	0	1		ENSG00000083457|ENST00000263087|ITGAE;ITGAE|p.N825Dfs*5|1|0.08|ENSG00000083457|chr17:3739854-3739855|-/ATCTCAATATGTC|frameshift_variant;ITGAE|p.A430Rfs*14|1|0.44|ENSG00000083457|chr17:3755213-3755213|C/-|frameshift_variant	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	412.712753	823.410954	-0.21097	-8.7069E-05	1.6063	0.00066296	1.3954	0.00057589	412.7131825668414	73.195	1.7633	73.005	71.756	73.519	-0.19027	-0.065985	0.0006181	NaN	40.573	58	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1059600			88399	1752	61488	61590				63			-0.007815256539743132
VTKTITLVK	9	Unmodified	_VTKTITLVK_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1;HCFC1|p.E1251Rfs*45|1|0.16|ENSG00000172534|chrX:153954648-153954649|-/G|frameshift_variant	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.7827453613281	2	501.831517	1001.64848	-1.0355	-0.00051964	-4.1706	-0.002093	-5.2061	-0.0026126	502.33266791389656	44.215	0.22746	44.215	44.12	44.348	0					11	6	2	0	0	0	0.024541	1	4214	4214		21.96	9.753	1	135470			88400	8288;17707	61489	61591	98363	98363					0.1477236355090099
VTKTSRGRA	9	Unmodified	_VTKTSRGRA_					0	0	0		ENST00000608574.1_2_1:109632787-109633024:-|nuORF	ENST00000608574.1_2_1:109632787-109633024:-|nuORF	ENST00000608574.1_2_1:109632787-109633024:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	488.7331237792969	2	488.28834	974.562127	-0.28217	-0.00013778	-3.004	-0.0014668	-3.2862	-0.0016046	488.28674689013377	23.359	0.77939	23.179	22.697	23.477	-0.17989					33	17	3	0	0	0	0.024288	1	862	862		52.937	8.8199	1	580580			88401	17594	61490	61592	98364	98364					0.07382796768888511
VTKTSRGRA	9	Unmodified	_VTKTSRGRA_					0	0	0		ENST00000608574.1_2_1:109632787-109633024:-|nuORF	ENST00000608574.1_2_1:109632787-109633024:-|nuORF	ENST00000608574.1_2_1:109632787-109633024:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.28834	974.562127	0.009639	4.7066E-06	-3.4953	-0.0017067	-3.4857	-0.001702	488.28647953276004	23.38	0.65038	23.178	22.873	23.523	-0.20193	-0.00045243	-0.00012016	NaN	52.937	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522850			88402	17594	61490	61592							0.07382796768888511
VTKTVSNDSF	10	Unmodified	_VTKTVSNDSF_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.27734375	2	549.277303	1096.54005	-0.20212	-0.00011102	0.025332	1.3914E-05	-0.17679	-9.7108E-05	549.2772444558801	35.033	0.66824	34.817	34.508	35.176	-0.21556					42	16	3	0	0	0	0.02042	1	2629	2629		162.64	69.493	1	1941600			88403	9608	61491	61593	98365	98365					-0.0043547249019866285
VTKTVSNDSF	10	Unmodified	_VTKTVSNDSF_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	549.2767333984375	2	549.277303	1096.54005	-0.47183	-0.00025916	0.42375	0.00023276	-0.048072	-2.6405E-05	549.2774060599572	35.037	0.59226	34.824	34.601	35.193	-0.21246					42	14	4	0	0	0	0.0041366	2	2622	2611;2622		182.39	74.304	1	1690400			88404	9608	61491	61593	98366;98367	98367					-0.0043547249019866285
VTKTVSNDSF	10	Unmodified	_VTKTVSNDSF_					0	0	0		nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;nc|ENSG00000187109|P55209-3|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	nc|ENSG00000187109|P55209-2|NAP1L1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.2775268554688	2	549.277303	1096.54005	-0.64194	-0.0003526	0.64541	0.00035451	0.0034672	1.9044E-06	549.2776427122074	34.949	0.69865	34.763	34.441	35.14	-0.18675					43	17	4	0	0	0	0.011429	2	2592	2592;2611		169.65	76.509	1	1825800			88405	9608	61491	61593	98368;98369	98368					-0.0043547249019866285
VTKVQHRPLGL	11	Unmodified	_VTKVQHRPLGL_					0	0	0		MAP2K2|p.S94L|1|0.33|ENSG00000126934|chr19:4117441-4117441|G/A|missense_variant	MAP2K2|p.S94L|1|0.33|ENSG00000126934|chr19:4117441-4117441|G/A|missense_variant	MAP2K2|p.S94L|1|0.33|ENSG00000126934|chr19:4117441-4117441|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	624.3807983398438	2	624.382771	1246.75099	0.43523	0.00027175	-3.5564	-0.0022205	-3.1211	-0.0019488	624.3809734772764	106	0.18108	106	105.85	106.03	0					13	7	2	0	0	0	1.0075	1	13603	13603		35.152	3.5178	1	78424			88406	17945	61492	61594	98370	98370					0.13748449342347158
VTKYDLNW	8	Unmodified	_VTKYDLNW_					0	0	0		nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2420654296875	2	519.766374	1037.5182	0.48688	0.00025307	-0.92039	-0.00047839	-0.43351	-0.00022532	519.7654579196355	69.068	0.53242	68.825	68.509	69.041	-0.24277					16	12	2	0	0	0	0.027866	1	8011	8011		30.504	0	1	119830			88407	9499	61493	61595	98371	98371					0.0009376755187986419
VTKYLVQW	8	Unmodified	_VTKYLVQW_					0	0	0			REV__nc|ENSG00000204410|O43196-4|MSH5	REV__nc|ENSG00000204410|O43196-4|MSH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.76953125	2	518.794935	1035.57532	-0.36104	-0.00018731	-4.0898	-0.0021218	-4.4509	-0.0023091	518.792673179699	65.767	1.0492	65.516	65.148	66.197	-0.25112					33	25	2	0	0	0	0.027866	1	7545	7545		31.955	5.2619	1	195920	+		88408	37078	61494	61596	98372	98372					0.058952348282673483
VTLAALEALD	10	Unmodified	_VTLAALEALD_					0	0	0			REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3200378417969	2	508.28714	1014.55973	-0.31604	-0.00016064	0.2889	0.00014684	-0.027139	-1.3794E-05	508.28709618227833	73.254	0.57112	73.263	72.986	73.558	0.0096512					34	14	3	0	0	0	0.03519	1	8885	8885		47.657	31.184	1	777820	+		88409	34376	61495	61597	98373	98373					0.05302903520566815
VTLAWEKP	8	Unmodified	_VTLAWEKP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.75604248046875	2	472.26601	942.517468	0.31629	0.00014937	-3.9358	-0.0018587	-3.6195	-0.0017094	472.2638792349821	42.914	0.58117	42.914	42.605	43.186	0					25	15	3	0	0	0	0.027866	1	3943	3943		58.782	21.623	1	1282700			88410	6479	61496	61598	98374	98374					0.043909729028428046
VTLCALLTVL	10	Unmodified	_VTLCALLTVL_					0	0	0			REV__ENSG00000197838|ENST00000330436|CYP2A13	REV__ENSG00000197838|ENST00000330436|CYP2A13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.7510375976562	2	523.319928	1044.6253	-0.10499	-5.4942E-05	3.5515	0.0018586	3.4465	0.0018036	523.3238212833323	39.833	0.53947	39.603	39.352	39.891	-0.23021					25	13	3	0	0	0	0.03519	1	3357	3357		45.972	13.16	1	114130	+		88411	28351	61497	61599	98375	98375					0.10477601441903062
VTLDEHLFI	9	Unmodified	_VTLDEHLFI_					0	0	0			REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	REV__ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.7626953125	2	543.795132	1085.57571	-1.201	-0.00065307	2.0806	0.0011314	0.87962	0.00047833	543.7958512076733	83.391	1.503	83.391	82.878	84.381	0					48	34	2	0	0	0	0.024354	1	10516	10516		47.916	0	1	119780	+		88412	25146	61498	61600	98376	98376					0.036346097574551095
VTLEMQTKI	9	Unmodified	_VTLEMQTKI_					0	0	0			REV__nc|ENSG00000154898|Q8IYA2|CCDC144CP	REV__nc|ENSG00000154898|Q8IYA2|CCDC144CP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.7761840820312	2	531.796817	1061.57908	-0.86054	-0.00045763	-2.8323	-0.0015062	-3.6928	-0.0019638	531.7950640734684	82.778	0.77465	82.778	82.406	83.18	0					41	17	3	0	0	0	0.024261	1	10346	10346		45.972	0	1	321470	+		88413	36802	61499	61601	98377	98377					0.05075536539811765
VTLERGLPV	9	Unmodified	_VTLERGLPV_					0	0	0		ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2979431152344	2	492.297842	982.581131	-0.57193	-0.00028156	0.53075	0.00026129	-0.041178	-2.0272E-05	492.2979634668604	60.679	1.2712	60.465	60.04	61.311	-0.21339					111	33	6	0	0	0	0.28753	2	6952	6952;6964		77.318	2.2498	1	5328000			88414	12960	61500	61602	98378;98379	98378					0.08914333339942004
VTLGAEVQW	9	Unmodified	_VTLGAEVQW_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.76617431640625	2	501.766374	1001.5182	0.13757	6.9027E-05	-0.6213	-0.00031175	-0.48373	-0.00024272	501.7661788167273	74.478	0.88691	74.202	73.917	74.804	-0.27573					69	20	5	0	0	0	0.12602	2	8776	8776;8787		104.75	27.972	1	1282400			88415	2325	61501	61603	98380;98381	98380					0.01749767551905279
VTLGAEVQW	9	Unmodified	_VTLGAEVQW_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.7662353515625	2	501.766374	1001.5182	0.17276	8.6685E-05	-0.36069	-0.00018098	-0.18793	-9.4298E-05	501.76617886294133	74.429	0.91495	74.166	73.859	74.774	-0.26326					63	21	4	0	0	0	0.03849	3	8790	8780;8790;8802		134.81	31.647	1	2233600			88416	2325	61501	61603	98382;98383;98384	98383					0.01749767551905279
VTLGAEVQW	9	Unmodified	_VTLGAEVQW_					0	0	0		ENST00000480653.5_1_20:32878355-32891076:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	ENST00000480653.5_1_20:32878355-32891076:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.7662048339844	2	501.766374	1001.5182	0.19387	9.7277E-05	-0.20356	-0.00010214	-0.0096902	-4.8622E-06	501.7661673006353	74.258	0.75662	74.075	73.798	74.555	-0.18279					38	18	3	0	0	0	0.086035	2	8744	8744;8756		115.49	22.299	1	2287100			88417	2325	61501	61603	98385;98386	98385					0.01749767551905279
VTLGHLVGIY	10	Unmodified	_VTLGHLVGIY_					0	0	0		ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	535.7794189453125	2	536.313492	1070.61243	-0.26572	-0.00014251	0.46163	0.00024758	0.19591	0.00010507	536.3138418337103	63.359	0.70152	63.135	62.814	63.516	-0.22375					27	17	3	0	0	0	0.03519	1	7177	7177		47.916	0	1	215930			88418	6892	61502	61604	98387	98387					0.07994906374051425
VTLGLLPGAR	10	Unmodified	_VTLGLLPGAR_					0	0	0		ENST00000475987.1_1_3:184944632-184971810:-|nuORF;EHHADH|p.L565Tfs*8|1|0.16|ENSG00000113790|chr3:185192692-185192705|CCTAATTCACAGAG/-|frameshift_variant;nc|ENSG00000113790|Q08426-2|EHHADH;ENSG00000113790|ENST00000231887|EHHADH	ENST00000475987.1_1_3:184944632-184971810:-|nuORF	ENST00000475987.1_1_3:184944632-184971810:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	499.7660827636719	2	498.813659	995.612765	-0.12219	-6.0949E-05	-0.26908	-0.00013422	-0.39127	-0.00019517	498.8133550449932	36.743	0.47024	36.679	36.508	36.978	-0.063389					18	11	2	0	0	0	0.03519	1	2902	2902		19.997	0	1	147470			88419	688	61503	61605	98388	98388					0.11478326093902069
VTLGSLAIIL	10	Unmodified	_VTLGSLAIIL_					0	0	0		ENSG00000164893|ENST00000297524|SLC7A13;nc|ENSG00000164893|Q8TCU3-2|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	ENSG00000164893|ENST00000297524|SLC7A13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.3128967285156	2	500.326068	998.637583	-0.50425	-0.00025229	1.6681	0.00083461	1.1639	0.00058232	500.3268934267588	75.938	0.44636	75.938	75.586	76.032	0					17	11	2	0	0	0	0.03519	1	9353	9353		76.774	0	1	673460			88420	7336	61504	61606	98389	98389					0.1382096117661149
VTLGWLLLT	9	Unmodified	_VTLGWLLLT_					0	0	0			REV__chr14:94110797-94114003|144|136.22|0.31|8.77|+|0|IFI27,None|1	REV__chr14:94110797-94114003|144|136.22|0.31|8.77|+|0|IFI27,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.3055725097656	2	508.312961	1014.61137	-0.43817	-0.00022273	2.2695	0.0011536	1.8313	0.00093088	508.3127307063875	91.736	0.42965	91.724	91.405	91.835	-0.012375					24	9	4	0	0	0	0.024381	1	11578	11578		37.159	6.6555	1	115970	+		88421	19368	61505	61607	98390	98390					0.10464692005132292
VTLILTLEL	9	Unmodified	_VTLILTLEL_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.287841796875	2	507.825901	1013.63725	-0.28144	-0.00014292	3.6431	0.0018501	3.3617	0.0017071	507.82773249869314	52.606	0.48408	52.416	52.067	52.551	-0.18982					14	11	2	0	0	0	0.024457	1	5471	5471		37.159	22.495	1	98678	+		88422	28791	61506	61608	98391	98391					0.1309754145676152
VTLILTLEL	9	Unmodified	_VTLILTLEL_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.825901	1013.63725	-0.47664	-0.00024205	0.24265	0.00012322	-0.23399	-0.00011882	507.825965851222	52.562	0.31987	52.562	52.391	52.711	0	0.097852	-0.0017343	NaN	37.159	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60228	+		88423	28791	61506	61608							0.1309754145676152
VTLILTLEL	9	Unmodified	_VTLILTLEL_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.825901	1013.63725	-0.07291	-3.7026E-05	-0.12658	-6.4283E-05	-0.19949	-0.00010131	507.8254622395562	52.44	0.38853	52.532	52.321	52.71	0.091938	0.067441	-0.0021093	NaN	37.159	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89066	+		88424	28791	61506	61608							0.1309754145676152
VTLILTLEL	9	Unmodified	_VTLILTLEL_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.825901	1013.63725	-0.56171	-0.00028525	3.9629	0.0020124	3.4011	0.0017272	507.82788501572657	52.467	0.35354	52.348	52.126	52.48	-0.11875	-0.11674	0.0020442	NaN	37.159	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94544	+		88425	28791	61506	61608							0.1309754145676152
VTLIPRFF	8	Unmodified	_VTLIPRFF_					0	0	0			REV__ENSG00000198919|ENST00000361582|DZIP3	REV__ENSG00000198919|ENST00000361582|DZIP3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	496.3144226074219	2	496.80002	991.585488	-0.19003	-9.4408E-05	4.0287	0.0020014	3.8386	0.001907	496.80216443208144	73.722	0.36636	73.532	73.276	73.643	-0.19027					13	8	2	0	0	0	0.027866	1	8676	8676		38.806	3.6054	1	129110	+		88426	28519	61507	61609	98392	98392					0.08935842553523798
VTLKSNAPL	9	Unmodified	_VTLKSNAPL_					0	0	0			REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7539367675781	2	471.784567	941.554582	-0.36715	-0.00017322	1.1373	0.00053658	0.77018	0.00036336	471.7847788383308	39.291	0.60239	39.193	38.843	39.446	-0.098751					29	16	2	0	0	0	0.024397	1	3383	3383		24.519	4.5224	1	475460	+		88427	33894	61508	61610	98393	98393					0.08146644448606821
VTLKSNAPL	9	Unmodified	_VTLKSNAPL_					0	0	0			REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.75537109375	2	471.784567	941.554582	-0.36831	-0.00017376	0.95656	0.00045129	0.58825	0.00027753	471.7847194312622	39.483	0.81049	39.507	39.063	39.874	0.023727					32	22	2	0	0	0	0.024374	1	3383	3383		49.442	29.445	1	429770	+		88428	33894	61508	61610	98394	98394					0.08146644448606821
VTLKSNAPL	9	Unmodified	_VTLKSNAPL_					0	0	0			REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.784567	941.554582	0.43276	0.00020417	-0.058995	-2.7833E-05	0.37377	0.00017634	471.7841779617284	39.226	0.59271	39.226	38.902	39.495	0	-0.24549	-0.00051443	NaN	49.442	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467180	+		88429	33894	61508	61610							0.08146644448606821
VTLKSNAPL	9	Unmodified	_VTLKSNAPL_					0	0	0			REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	471.784567	941.554582	-0.039837	-1.8795E-05	0.19257	9.0853E-05	0.15273	7.2058E-05	471.7845785058772	39.777	0.57894	39.627	39.28	39.859	-0.1497	0.15564	-0.00027706	NaN	49.442	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	752720	+		88430	33894	61508	61610							0.08146644448606821
VTLKSNAPL	9	Unmodified	_VTLKSNAPL_					0	0	0			REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	471.784567	941.554582	-0.14211	-6.7046E-05	0.35895	0.00016935	0.21684	0.0001023	471.78464173050025	39.888	0.54825	39.663	39.38	39.928	-0.225	0.19167	-0.00012008	NaN	49.442	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622440	+		88431	33894	61508	61610							0.08146644448606821
VTLKSNAPL	9	Unmodified	_VTLKSNAPL_					0	0	0			REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	REV__ENST00000498979.6_1_11:119252535-119369460:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	471.784567	941.554582	-0.46254	-0.00021822	0.87844	0.00041443	0.4159	0.00019621	471.784856336183	39.842	0.57838	39.612	39.313	39.891	-0.23021	0.141	0.0003701	NaN	49.442	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595690	+		88432	33894	61508	61610							0.08146644448606821
VTLLALAGIA	10	Unmodified	_VTLLALAGIA_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.2952575683594	2	471.305136	940.595718	0.26987	0.00012719	0.21211	9.997E-05	0.48198	0.00022716	471.30505387640255	55.417	0.31955	55.261	55.16	55.48	-0.15601					11	8	2	0	0	0	0.03519	1	6077	6077		24.203	0	1	180320			88433	2494	61509	61611	98395	98395					0.12304405488089287
VTLLALAGIA	10	Unmodified	_VTLLALAGIA_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	471.305136	940.595718	1.257	0.00059242	-0.47488	-0.00022381	0.7821	0.00036861	471.30464463367286	55.364	0.35741	55.364	55.216	55.573	0	0.076452	-0.0006561	NaN	24.203	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109200			88434	2494	61509	61611							0.12304405488089287
VTLLALAGIA	10	Unmodified	_VTLLALAGIA_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	471.305136	940.595718	-0.49886	-0.00023511	0.83127	0.00039178	0.33241	0.00015667	471.30529534648764	55.139	0.29887	55.237	55.148	55.447	0.098015	-0.05024	0.00057509	NaN	24.203	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161170			88435	2494	61509	61611							0.12304405488089287
VTLLIWVP	8	Unmodified	_VTLLIWVP_					0	0	0		ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	ENSG00000148483|ENST00000377495|TMEM236	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	471.2924499511719	2	470.796946	939.57934	0.19386	9.1269E-05	-3.9359	-0.001853	-3.742	-0.0017617	470.7947316950205	53.284	1.2038	53.284	52.595	53.799	0					57	32	3	0	0	0	0.027866	1	5681	5681		35.201	1.6851	1	1672400			88436	6035	61510	61612	98396	98396					0.10713324321989148
VTLLNSTVD	9	Unmodified	_VTLLNSTVD_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.2740173339844	2	481.263665	960.512776	0.15335	7.3801E-05	0.06699	3.224E-05	0.22034	0.00010604	481.26420138940153	76.46	1.3103	76.292	75.629	76.939	-0.16854					47	31	3	0	0	0	0.024292	1	8994	8994		40.778	0	1	93346	+		88437	27601	61511	61613	98397	98397					0.03094043969440463
VTLLRTLCS	9	Unmodified	_VTLLRTLCS_					0	0	0			REV__ENST00000437570.6_1_5:178986928-178986994:+|nuORF	REV__ENST00000437570.6_1_5:178986928-178986994:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	503.2909240722656	2	503.291702	1004.56885	-0.41393	-0.00020833	-3.1224	-0.0015715	-3.5363	-0.0017798	503.2899852120812	54.843	1.1883	54.697	54.208	55.396	-0.14609					64	27	3	0	0	0	0.67687	1	5845	5845		47.657	1.7054	1	3259200	+		88438	32481	61512	61614	98398	98398					0.0667497360524294
VTLLVAPGR	9	Unmodified	_VTLLVAPGR_					0	0	0			REV__ENSG00000182156|ENST00000328313|ENPP7	REV__ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.2946472167969	2	463.295102	924.575651	-0.66685	-0.00030895	0.10666	4.9413E-05	-0.5602	-0.00025954	463.29505731713635	48.375	0.99148	48.277	47.966	48.958	-0.097549					80	26	5	0	0	0	0.4752	1	4792	4792		60.972	9.6365	1	9029400	+		88439	27451	61513	61615	98399	98399					0.11034654548132039
VTLNDHSVK	9	Unmodified	_VTLNDHSVK_					0	0	0			REV__nc|ENSG00000101871|O15344-2|MID1	REV__nc|ENSG00000101871|O15344-2|MID1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.29022216796875	2	506.774731	1011.53491	-0.8625	-0.00043709	0.07208	3.6528E-05	-0.79042	-0.00040057	506.7747145319947	43.651	0.28689	43.507	43.353	43.639	-0.14471					12	7	3	0	0	0	0.024427	1	4103	4103		34.173	0	1	82434	+		88440	21261	61514	61616	98400	98400					0.02960268437857394
VTLNQAAEV	9	Unmodified	_VTLNQAAEV_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	472.755859375	2	472.756007	943.497461	0.13682	6.4682E-05	-0.19864	-9.3908E-05	-0.06182	-2.9226E-05	472.7558120655285	42.908	0.85719	42.796	42.464	43.322	-0.11253					52	22	3	0	0	0	0.057894	1	3898	3898		125.81	19.131	1	5269100	+		88441	20097	61515	61617	98401	98401					0.023451771722307058
VTLNRAAEV	9	Unmodified	_VTLNRAAEV_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.77716064453125	2	486.777274	971.539994	0.06397	3.1139E-05	-0.95945	-0.00046704	-0.89548	-0.0004359	486.7767677982205	41.592	1.1313	41.592	41.258	42.389	0					97	32	5	0	0	0	0.091713	3	3757	3745;3757;3770		113.41	12.647	1	17130000	+		88442	20097	61516	61618	98402;98403;98404	98403					0.053085723004642205
VTLNRAAEV	9	Unmodified	_VTLNRAAEV_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.77716064453125	2	486.777274	971.539994	-0.36066	-0.00017556	-0.54394	-0.00026478	-0.9046	-0.00044034	486.7769839018573	41.78	1.0672	41.648	41.319	42.386	-0.13219					90	30	5	0	0	0	0.26966	1	3758	3758		79.713	7.8351	1	14812000	+		88443	20097	61516	61618	98405	98405					0.053085723004642205
VTLNRAAEV	9	Unmodified	_VTLNRAAEV_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7768859863281	2	486.777274	971.539994	-0.46034	-0.00022408	-0.58445	-0.0002845	-1.0448	-0.00050858	486.77696241305097	41.739	1.2099	41.762	41.429	42.638	0.023006					99	34	5	0	0	0	0.14024	2	3713	3713;3724		101.6	19.36	1	15813000	+		88444	20097	61516	61618	98406;98407	98406					0.053085723004642205
VTLNVQGNR	9	Unmodified	_VTLNVQGNR_					0	0	0			REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	REV__nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2937316894531	2	500.780348	999.546142	-0.36779	-0.00018418	-3.0064	-0.0015055	-3.3742	-0.0016897	500.7787209810837	78.227	0.55246	78.071	77.617	78.17	-0.15592					23	12	2	0	0	0	0.024427	1	9284	9284		42.396	13.247	1	76566	+		88445	27931	61517	61619	98408	98408					0.04635090531996866
VTLPGAKEG	9	Unmodified	_VTLPGAKEG_					0	0	0		ENSG00000157103|ENST00000287766|SLC6A1;SLC6A1|p.G258E|1|0.26|ENSG00000157103|chr3:11025507-11025507|G/A|missense_variant	ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.248046875	2	436.247818	870.481082	-0.059311	-2.5874E-05	0.12648	5.5177E-05	0.067171	2.9303E-05	436.2478232636943	34.152	1.607	33.928	33.485	35.092	-0.22412					107	40	4	0	0	0	0.020687	3	2478	2467;2478;2500		148.99	10.817	1	8890900			88446	6574	61518	61620	98409;98410;98411	98410					0.040660960061472906
VTLPGAKEG	9	Unmodified	_VTLPGAKEG_					0	0	0		ENSG00000157103|ENST00000287766|SLC6A1;SLC6A1|p.G258E|1|0.26|ENSG00000157103|chr3:11025507-11025507|G/A|missense_variant	ENSG00000157103|ENST00000287766|SLC6A1	ENSG00000157103|ENST00000287766|SLC6A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.2485046386719	2	436.247818	870.481082	-0.63886	-0.0002787	0.53996	0.00023556	-0.098903	-4.3146E-05	436.248019222092	34.091	1.3776	33.916	33.469	34.846	-0.17557					94	34	4	0	0	0	0.12914	1	2448	2448		104.06	19.141	1	9163300			88447	6574	61518	61620	98412	98412					0.040660960061472906
VTLPLDINNY	10	Unmodified	_VTLPLDINNY_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	580.8093872070312	2	581.311146	1160.60774	-0.41317	-0.00024018	-3.7994	-0.0022086	-4.2126	-0.0024488	581.3089223609198	100.56	0.28527	100.39	100.28	100.57	-0.17088					9	6	2	0	0	0	0.03519	1	12463	12463		31.53	2.3803	1	148330			88448	1963	61519	61621	98413	98413					0.03385977440620991
VTLPRPDLF	9	Unmodified	_VTLPRPDLF_					0	0	0			REV__CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	REV__CYP1B1|p.S464Ffs*14|1|0.28|ENSG00000138061|chr2:38070963-38070964|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2992553710938	2	529.305667	1056.59678	-0.64954	-0.00034381	-0.27471	-0.0001454	-0.92425	-0.00048921	529.3053868553769	31.071	0.3855	31.083	30.871	31.257	0.011797					17	8	3	0	0	0	0.024405	1	2001	2001		27.882	5.9224	1	66915	+		88449	19641	61520	61622	98414	98414					0.07074619856962272
VTLPVQQAW	9	Unmodified	_VTLPVQQAW_					0	0	0		ENST00000378566.5_1_9:35108314-35108714:-|nuORF;ENST00000605104.1_1_9:35108540-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	521.2906494140625	2	521.290017	1040.56548	-0.082727	-4.3125E-05	-0.17041	-8.8833E-05	-0.25314	-0.00013196	521.2899364770258	74.898	1.034	74.622	74.308	75.342	-0.27573					50	24	3	0	0	0	0.53979	1	8831	8831		56.721	0	1	458840			88450	13242	61521	61623	98415	98415					0.0468204682290434
VTLPVQQAW	9	Unmodified	_VTLPVQQAW_					0	0	0		ENST00000378566.5_1_9:35108314-35108714:-|nuORF;ENST00000605104.1_1_9:35108540-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	521.290017	1040.56548	0.27199	0.00014178	-0.22811	-0.00011891	0.043871	2.287E-05	521.2898872201783	74.876	0.71333	74.612	74.231	74.944	-0.26325	0.034327	0.00027913	NaN	56.721	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383490			88451	13242	61521	61623							0.0468204682290434
VTLPVQQAW	9	Unmodified	_VTLPVQQAW_					0	0	0		ENST00000378566.5_1_9:35108314-35108714:-|nuORF;ENST00000605104.1_1_9:35108540-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	ENST00000378566.5_1_9:35108314-35108714:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	521.290017	1040.56548	0.59047	0.0003078	-0.8867	-0.00046223	-0.29623	-0.00015442	521.2895155015545	74.683	0.88168	74.5	74.224	75.105	-0.18279	-0.078173	-0.0004075	NaN	56.721	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417660			88452	13242	61521	61623							0.0468204682290434
VTLPVVVERPQ	11	Unmodified	_VTLPVVVERPQ_					0	0	0			REV__nc|ENSG00000173511|P49765-2|VEGFB	REV__nc|ENSG00000173511|P49765-2|VEGFB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.8951110839844	3	412.915201	1235.72377	0.055269	2.2821E-05	2.4258	0.0010017	2.4811	0.0010245	413.25147636054845	30.454	0.16723	30.304	30.219	30.386	-0.14952					5	3	2	0	0	0	0.02473	1	1925	1925		26.75	0.68632	1	11446	+		88453	26778	61522	61624	98416	98416					0.11533921011346138
VTLPYFHSF	9	Unmodified	_VTLPYFHSF_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.7843017578125	2	555.784567	1109.55458	0.032465	1.8043E-05	-0.12154	-6.7551E-05	-0.089077	-4.9507E-05	555.7843043166532	74.65	0.76242	74.375	73.958	74.72	-0.27573					46	17	3	0	0	0	0.096521	3	8804	8794;8804;8818		111.65	23.894	1	2653300			88454	5820	61523	61625	98417;98418;98419	98418					0.004186444486094842
VTLPYFHSF	9	Unmodified	_VTLPYFHSF_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.7825927734375	2	555.784567	1109.55458	0.15566	8.6513E-05	-0.22727	-0.00012631	-0.071611	-3.98E-05	555.7843167357875	74.605	1.0214	74.342	73.923	74.944	-0.26325					55	23	4	0	0	0	0.29158	2	8810	8810;8834		76.774	2.5191	1	1883600			88455	5820	61523	61625	98420;98421	98420					0.004186444486094842
VTLPYFHSF	9	Unmodified	_VTLPYFHSF_					0	0	0		MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;MYO10|p.G1223Wfs*28|1|0.17|ENSG00000145555|chr5:16694504-16694505|-/A|frameshift_variant;nc|ENSG00000145555|Q9HD67-3|MYO10	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MYO10|p.Q1828Lfs*55|1|0.35|ENSG00000145555|chr5:16670921-16670930|GAACCTGGAG/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.7827758789062	2	555.784567	1109.55458	0.3871	0.00021515	-0.29488	-0.00016389	0.092226	5.1258E-05	555.7842654447932	74.407	1.4932	74.225	73.889	75.382	-0.18279					65	35	3	0	0	0	0.25032	1	8777	8777		82.305	7.2617	1	1775600			88456	5820	61523	61625	98422	98422					0.004186444486094842
VTLQHLLGL	9	Unmodified	_VTLQHLLGL_					0	0	0			REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|5|1|sense	REV__Tigger1_dup324|chr1:83019440-83021751:-|2.345271564597386|0.2214501882032552|3.4|504.0|5|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2996826171875	2	497.30821	992.601866	0.59564	0.00029622	-1.8396	-0.00091484	-1.2439	-0.00061862	497.30692578057676	82.118	0.77938	82.008	81.686	82.466	-0.11006					39	18	3	0	0	0	0.2508	1	10212	10212		82.241	0	1	1014100	+		88457	37691	61524	61626	98423	98423					0.10526923719623937
VTLQRLILD	9	Unmodified	_VTLQRLILD_					0	0	0			REV__VN1R2|p.H130Q|1|0.41|ENSG00000196131|chr19:53258765-53258765|C/A|missense_variant	REV__VN1R2|p.H130Q|1|0.41|ENSG00000196131|chr19:53258765-53258765|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.832763671875	2	535.832049	1069.64954	-0.51978	-0.00027852	0.75101	0.00040242	0.23123	0.0001239	535.8323656720646	78.331	0.73084	78.175	77.87	78.601	-0.15591					44	16	4	0	0	0	0.20652	1	9340	9340		88.177	9.9132	1	981340	+		88458	37777	61525	61627	98424	98424					0.11750577919792704
VTLQTSLLKL	10	Unmodified	_VTLQTSLLKL_					0	0	0		ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112;nc|ENSG00000000460|Q9NSG2-3|FIRRM	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	ENST00000498289.5_1_1:169773308-169819597:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	557.8084106445312	2	558.355357	1114.69616	-0.30689	-0.00017135	1.1322	0.00063217	0.82532	0.00046082	558.3558714139325	52.2	0.55497	52.053	51.811	52.366	-0.14735					30	14	3	0	0	0	0.03519	1	5565	5565		51.193	0	1	272000			88459	714	61526	61628	98425	98425					0.1434001775107845
VTLRNIATQ	9	Unmodified	_VTLRNIATQ_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1;HECTD1|p.S1647Vfs*59|1|0.19|ENSG00000092148|chr14:31127828-31127828|G/-|frameshift_variant	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.78448486328125	2	508.298373	1014.58219	-0.75994	-0.00038627	4.1036	0.0020859	3.3437	0.0016996	508.30018130342347	73.114	0.82344	73.114	72.614	73.438	0					26	20	2	0	0	0	0.024319	1	8852	8852		31.53	0	1	193930			88460	1982	61527	61629	98426	98426					0.07548547708859132
VTLRRKWK	8	Unmodified	_VTLRRKWK_					0	0	0		ENST00000379521.8_2_9:33364719-33364767:+|nuORF	ENST00000379521.8_2_9:33364719-33364767:+|nuORF	ENST00000379521.8_2_9:33364719-33364767:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7902221679688	2	543.848368	1085.68218	-0.12251	-6.6625E-05	-2.7727	-0.0015079	-2.8952	-0.0015746	543.8464997149067	49.334	0.76684	49.334	49.039	49.805	0					44	20	3	0	0	0	0.027866	1	5096	5096		63.306	18.929	1	973560			88461	13268	61528	61630	98427	98427					0.14276829833306692
VTLRVAGYL	9	Unmodified	_VTLRVAGYL_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	496.31378173828125	2	496.300384	990.586216	-0.27158	-0.00013479	1.6747	0.00083115	1.4031	0.00069637	496.30082855078035	73.947	0.23306	73.67	73.522	73.755	-0.2769					8	5	2	0	0	0	0.024261	1	8705	8705		64.207	0	1	218840	+		88462	22806	61529	61631	98428	98428					0.0905463720255284
VTLSTAERR	9	Unmodified	_VTLSTAERR_					0	0	0			REV__ENST00000266712.10_1_12:88542252-88547098:+|nuORF	REV__ENST00000266712.10_1_12:88542252-88547098:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7844848632812	2	516.793455	1031.57236	-0.46129	-0.00023839	3.6951	0.0019096	3.2338	0.0016712	516.7951384728904	44.965	0.69879	44.712	44.282	44.981	-0.25252					25	17	2	0	0	0	0.024427	1	4176	4176		26.693	10.22	1	673060	+		88463	29763	61530	61632	98429	98429					0.057833597034687045
VTLVQTLEI	9	Unmodified	_VTLVQTLEI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7846374511719	2	508.305332	1014.59611	0.44253	0.00022494	2.2805	0.0011592	2.7231	0.0013841	508.30555785882103	72.89	0.24446	72.609	72.465	72.709	-0.28124					6	5	2	0	0	0	0.024447	1	8845	8845		25.574	0	1	47568			88464	18548	61531	61633	98430	98430					0.08939780417290422
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.31365966796875	2	500.313492	998.612431	-0.090474	-4.5266E-05	-0.4003	-0.00020028	-0.49077	-0.00024554	500.31332521540634	76.17	3.2658	76.17	75.769	79.035	0					276	79	5	0	0	0	0.14181	2	9558	9519;9558		101.25	14.817	1	55910000			88465	16211	61532	61634	98431;98432	98432					0.11306906374034043
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.31317138671875	2	500.313492	998.612431	-0.39709	-0.00019867	-0.051583	-2.5808E-05	-0.44867	-0.00022448	500.3135104911785	76.329	3.772	76.101	75.528	79.3	-0.22843					266	92	6	0	0	0	0.30449	2	9430	9417;9430		75.043	3.1658	1	57941000			88466	16211	61532	61634	98433;98434	98434					0.11306906374034043
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.3122253417969	2	500.313492	998.612431	0.31324	0.00015672	-0.82928	-0.0004149	-0.51604	-0.00025818	500.3131305903417	76.175	3.4375	76.187	75.788	79.226	0.011642					264	83	5	0	0	0	0.22902	2	9529	9499;9529		85.161	2.1641	1	55383000			88467	16211	61532	61634	98435;98436	98436					0.11306906374034043
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.3134460449219	2	500.313492	998.612431	-0.23354	-0.00011684	-0.31312	-0.00015666	-0.54666	-0.0002735	500.3134040007228	76.297	1.3954	76.029	75.626	77.022	-0.26806					126	34	6	0	0	0	0.1158	2	9031	9031;9160		107.01	8.4255	1	46142000			88468	16211	61532	61634	98437;98438	98437					0.11306906374034043
VTLVSKFSF	9	Unmodified	_VTLVSKFSF_					0	0	0			REV__ENSG00000075407|ENST00000685332|ZNF37A	REV__ENSG00000075407|ENST00000685332|ZNF37A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.290283203125	2	514.294768	1026.57498	0.31734	0.00016321	-3.2201	-0.0016561	-2.9028	-0.0014929	514.2946035156451	70.384	1.4425	70.17	69.814	71.257	-0.21425					104	36	8	0	0	0	0.67687	1	8174	8174		47.657	3.2801	1	12146000	+		88469	20547	61533	61635	98439	98439					0.0627581510843811
VTLVTITVK	9	Unmodified	_VTLVTITVK_					0	0	0			REV__nc|ENSG00000173585|P51686-2|CCR9	REV__nc|ENSG00000173585|P51686-2|CCR9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.79229736328125	2	487.318243	972.621933	-0.28324	-0.00013803	-0.27197	-0.00013254	-0.55521	-0.00027056	487.31813101667456	78.439	1.3708	78.439	78.202	79.573	0					69	32	3	0	0	0	0.020546	1	9730	9730		96.19	2.995	1	602550	+		88470	26788	61534	61636	98440	98440					0.13452674659572494
VTLVTVSQP	9	Unmodified	_VTLVTVSQP_					0	0	0			REV__ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	REV__ROBO2|p.S1022Tfs*9|1|0.62|ENSG00000185008|chr3:77602420-77602420|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2412414550781	2	472.276575	942.538597	1.8148	0.00085709	0.075331	3.5577E-05	1.8901	0.00089267	472.27671804730477	24.29	1.0522	24.109	23.715	24.767	-0.18089					55	23	4	0	0	0	0.024457	1	987	987		29.15	1.2673	1	489250	+		88471	27722	61535	61637	98441	98441					0.0650293821172454
VTLWILKN	8	Unmodified	_VTLWILKN_					0	0	0		nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.76361083984375	2	493.805303	985.596052	0.26424	0.00013049	0.7095	0.00035036	0.97375	0.00048084	493.80516940602183	74.819	0.94885	74.561	74.114	75.063	-0.25887					43	22	3	0	0	0	0.027866	1	9091	9091		47.916	5.4411	1	198260			88472	4248	61536	61638	98442	98442					0.10267825207949954
VTMEDLIR	8	Unmodified	_VTMEDLIR_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7740478515625	2	488.760235	975.505917	-0.1423	-6.9553E-05	-2.9247	-0.0014295	-3.067	-0.001499	488.75869005734734	56.068	0.74362	56.068	55.645	56.388	0					51	20	3	0	0	0	0.027866	1	6208	6208		37.159	11.709	1	1407100			88473	5200	61537	61639	98443	98443					0.01718407817213574
VTMSLPLN	8	Unmodified	_VTMSLPLN_					0	0	0		ENST00000551316.1_1_12:96252749-96255077:+|nuORF	ENST00000551316.1_1_12:96252749-96255077:+|nuORF	ENST00000551316.1_1_12:96252749-96255077:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.73724365234375	2	437.738771	873.462989	0.32649	0.00014292	-3.8009	-0.0016638	-3.4744	-0.0015209	437.7369481885117	59.531	1.1148	59.617	59.134	60.249	0.085686					63	29	3	0	0	0	0.33369	1	6726	6726		106.42	3.6419	1	1641000			88474	16599	61538	61640	98444	98444					0.02119637759778925
VTMVTLLSN	9	Unmodified	_VTMVTLLSN_					0	0	0		SCNN1A|p.P540L|1|0.07|ENSG00000111319|chr12:6348737-6348737|G/A|missense_variant;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	SCNN1A|p.P540L|1|0.07|ENSG00000111319|chr12:6348737-6348737|G/A|missense_variant	SCNN1A|p.P540L|1|0.07|ENSG00000111319|chr12:6348737-6348737|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.78277587890625	2	489.270435	976.526318	0.099158	4.8515E-05	2.0462	0.0010011	2.1453	0.0010496	489.271318393292	40.293	0.32692	40.181	40.055	40.382	-0.11223					12	8	2	0	0	0	0.024436	1	3541	3541		23.042	6.5693	1	140440			88475	3104	61539	61641	98445	98445					0.03711578477020794
VTMVTLLSN	9	Unmodified	_VTMVTLLSN_					0	0	0		SCNN1A|p.P540L|1|0.07|ENSG00000111319|chr12:6348737-6348737|G/A|missense_variant;nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	SCNN1A|p.P540L|1|0.07|ENSG00000111319|chr12:6348737-6348737|G/A|missense_variant	SCNN1A|p.P540L|1|0.07|ENSG00000111319|chr12:6348737-6348737|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	489.270435	976.526318	-0.93217	-0.00045608	0.24015	0.0001175	-0.69202	-0.00033859	489.27061991513267	40.495	0.21421	40.345	40.153	40.367	-0.1497	0.082364	-0.00060503	NaN	23.042	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392360			88476	3104	61539	61641							0.03711578477020794
VTNGVPPGFGK	11	Unmodified	_VTNGVPPGFGK_					0	0	0		ENSG00000132837|ENST00000255189|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENSG00000132837|ENST00000255189|DMGDH	ENSG00000132837|ENST00000255189|DMGDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.8109130859375	2	536.792924	1071.57129	-1.034	-0.00055502	0.98532	0.00052891	-0.04864	-2.611E-05	536.7933873398486	65.521	0.78	65.249	64.94	65.72	-0.27283					62	21	4	0	0	0	0.024771	1	7677	7677		42.864	0	1	2656100			88477	4656	61540	61642	98446	98446					0.03837145334568959
VTNITETLI	9	Unmodified	_VTNITETLI_					0	0	0			REV__ENSG00000138768|ENST00000514213|USO1	REV__ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.7578430175781	2	502.28714	1002.55973	0.11248	5.65E-05	1.2131	0.00060933	1.3256	0.00066583	502.28746587437604	37.297	0.45086	37.329	37.074	37.525	0.032269					16	11	2	0	0	0	0.024427	1	2952	2952		34.173	3.6689	1	148930	+		88478	23895	61541	61643	98447	98447					0.058549035205942346
VTNKPSFELCV	11	Unmodified	_VTNKPSFELCV_					0	0	0			REV__ENST00000469331.1_1_3:150264589-150280476:+|nuORF	REV__ENST00000469331.1_1_3:150264589-150280476:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.8951110839844	3	412.88128	1235.62201	0.054368	2.2448E-05	-2.7719	-0.0011445	-2.7176	-0.001122	413.2150815574895	30.14	0.93172	29.99	29.668	30.599	-0.14952					41	21	3	0	0	0	0.024751	1	1925	1925		41.08	10.941	1	48617	+		88479	24372	61542	61644	98448	98448					0.013623065972524273
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	411.56304931640625	3	411.56305	1231.66732	0.024426	1.0053E-05	-0.26926	-0.00011082	-0.24484	-0.00010077	411.56315463898017	32.595	2.1174	32.358	31.867	33.985	-0.23666					162	51	4	0	0	0	0.2497	8	2232	2232;2242;2254;2266;2278;2291;2304;2318		114.86	52.896	1	41628000			88480	4600	61543	61645	98449;98450;98451;98452;98453;98454;98455;98456	98449					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	616.8409423828125	2	616.840936	1231.66732	-0.65982	-0.000407	0.45337	0.00027965	-0.20645	-0.00012735	616.8412376790145	32.59	0.86798	32.354	32.042	32.91	-0.23667					66	20	4	0	0	0	3.4471E-05	4	2267	2244;2255;2267;2282		178.55	98.835	1	5789800			88481	4600	61543	61645	98457;98458;98459;98460	98459					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.56292724609375	3	411.56305	1231.66732	0.47838	0.00019688	-0.73186	-0.00030121	-0.25348	-0.00010432	411.56297179066684	32.671	2.0773	32.478	31.942	34.019	-0.19261					150	51	4	0	0	0	0.44183	7	2231	2231;2241;2253;2265;2289;2302;2316		94.409	49.77	1	39520000			88482	4600	61543	61645	98461;98462;98463;98464;98465;98466;98467	98461					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	616.8410034179688	2	616.840936	1231.66732	-0.28694	-0.000177	0.15209	9.3817E-05	-0.13485	-8.318E-05	616.841037342858	32.671	1.2204	32.478	32.073	33.293	-0.19261					76	29	4	0	0	0	3.4471E-05	4	2259	2247;2259;2271;2285		191.45	109.64	1	5547800			88483	4600	61543	61645	98468;98469;98470;98471	98469					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.5630187988281	3	411.56305	1231.66732	-0.16244	-6.6855E-05	-0.2019	-8.3095E-05	-0.36434	-0.00014995	411.56320074837987	32.501	2.2068	32.344	31.861	34.068	-0.15772					139	54	4	0	0	0	0.2497	7	2241	2208;2217;2229;2241;2253;2266;2279		114.86	57.71	1	44646000			88484	4600	61543	61645	98472;98473;98474;98475;98476;98477;98478	98475					0.060752931746719696
VTNKSQIRTW	10	Unmodified	_VTNKSQIRTW_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	616.8406982421875	2	616.840936	1231.66732	-0.34983	-0.00021579	0.13185	8.1329E-05	-0.21798	-0.00013446	616.8410652242012	32.501	0.96697	32.344	32.079	33.046	-0.15772					72	23	4	0	0	0	1.0674E-05	4	2214	2214;2223;2235;2251		214.71	113.45	1	6974800			88485	4600	61543	61645	98479;98480;98481;98482	98479					0.060752931746719696
VTNKVTLYN	9	Unmodified	_VTNKVTLYN_					0	0	0		ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	ENSG00000198815|ENST00000361346|FOXJ3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.23828125	2	526.292756	1050.57096	-0.81629	-0.00042961	0.25395	0.00013365	-0.56234	-0.00029596	526.2925600510188	56.067	0.7856	56.067	55.822	56.608	0					37	21	4	0	0	0	0.022657	1	6305	6305		58.23	0	1	1035500			88486	10209	61544	61646	98483	98483					0.04769725614710296
VTNLVAIPK	9	Unmodified	_VTNLVAIPK_					0	0	0		ENST00000556821.5_1_14:23792634-23793187:+|nuORF	ENST00000556821.5_1_14:23792634-23793187:+|nuORF	ENST00000556821.5_1_14:23792634-23793187:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	477.75921630859375	2	477.80276	953.590967	-0.058879	-2.8133E-05	-0.26229	-0.00012532	-0.32117	-0.00015346	477.8025042073648	38.685	0.59441	38.46	38.177	38.771	-0.2257					36	15	3	0	0	0	0.023835	1	3163	3163		80.455	24.021	1	622940			88487	16720	61545	61647	98484	98484					0.11231521345314377
VTNPHSSQW	9	Unmodified	_VTNPHSSQW_					0	0	0		nc|ENSG00000116717|P24522-2|GADD45A;ENSG00000116717|ENST00000370986|GADD45A	nc|ENSG00000116717|P24522-2|GADD45A	nc|ENSG00000116717|P24522-2|GADD45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.2488403320312	2	528.24888	1054.48321	-0.072544	-3.8321E-05	-0.35676	-0.00018846	-0.42931	-0.00022678	528.2487185827094	32.843	0.89119	32.65	32.249	33.14	-0.19261					63	21	4	0	0	0	0.015032	5	2295	2273;2283;2295;2308;2323		209.19	106.42	1	5983100			88488	3570	61546	61648	98485;98486;98487;98488;98489	98487					-0.04185475256031168
VTNPHSSQW	9	Unmodified	_VTNPHSSQW_					0	0	0		nc|ENSG00000116717|P24522-2|GADD45A;ENSG00000116717|ENST00000370986|GADD45A	nc|ENSG00000116717|P24522-2|GADD45A	nc|ENSG00000116717|P24522-2|GADD45A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.2484741210938	2	528.24888	1054.48321	-0.25163	-0.00013292	-0.34505	-0.00018227	-0.59668	-0.00031519	528.2487449856179	32.661	1.2483	32.503	32.121	33.37	-0.15772					69	30	3	0	0	0	0.01456	4	2247	2236;2247;2259;2272		209.19	103.41	1	6949500			88489	3570	61546	61648	98490;98491;98492;98493	98491					-0.04185475256031168
VTNPHTDAW	9	Unmodified	_VTNPHTDAW_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7431640625	2	520.743431	1039.47231	-0.69014	-0.00035938	0.50298	0.00026192	-0.18716	-9.7462E-05	520.743565662624	38.017	1.1281	37.837	37.483	38.611	-0.17929					94	31	4	0	0	0	0.010583	3	3103	3090;3103;3115		231.3	131.92	1	7396000			88490	2091	61547	61649	98494;98495;98496	98495					-0.04584877630327355
VTNPHTDAW	9	Unmodified	_VTNPHTDAW_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.7435913085938	2	520.743431	1039.47231	-0.59804	-0.00031143	0.28584	0.00014885	-0.3122	-0.00016258	520.7434556570025	38.054	1.3295	37.833	37.427	38.757	-0.22149					101	36	4	0	0	0	0.013887	3	3099	3087;3099;3113		215.39	119.2	1	7800700			88491	2091	61547	61649	98497;98498;98499	98498					-0.04584877630327355
VTNPHTDAW	9	Unmodified	_VTNPHTDAW_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7431640625	2	520.743431	1039.47231	-0.67493	-0.00035146	0.3727	0.00019408	-0.30223	-0.00015738	520.7435071042366	38.032	1.4532	37.813	37.5	38.953	-0.21848					105	40	4	0	0	0	0.010583	3	3101	3077;3088;3101		231.3	119.65	1	7398000			88492	2091	61547	61649	98500;98501;98502	98502					-0.04584877630327355
VTNPHTDAW	9	Unmodified	_VTNPHTDAW_					0	0	0		ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	ENSG00000099860|ENST00000215631|GADD45B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.743431	1039.47231	-1.0774	-0.00056104	4.945	0.0025751	3.8676	0.002014	521.2481756550795	37.665	0.34426	37.585	37.436	37.78	-0.079815	-0.18205	0.0046891	NaN	231.3	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50619			88493	2091	61547	61649							-0.04584877630327355
VTNRNITL	8	Unmodified	_VTNRNITL_					0	0	0		ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-2|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL	ENSG00000197444|ENST00000374103|OGDHL	ENSG00000197444|ENST00000374103|OGDHL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2802429199219	2	465.771991	929.529429	0.00066549	3.0996E-07	-0.15476	-7.2082E-05	-0.15409	-7.1772E-05	465.7718065755513	24.432	0.46461	24.217	23.954	24.418	-0.2151					15	10	2	0	0	0	0.027866	1	1096	1096		55.504	0	1	64140			88494	9998	61548	61650	98503	98503					0.06184589646022687
VTNVLQGDI	9	Unmodified	_VTNVLQGDI_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.754638671875	2	479.763832	957.513111	0.063952	3.0682E-05	-0.58808	-0.00028214	-0.52413	-0.00025146	479.76340194229675	47.893	0.38683	47.893	47.685	48.072	0					19	11	2	0	0	0	0.024367	1	4858	4858		36.447	7.2972	1	434730	+		88495	25603	61549	61651	98504	98504					0.032654636892857525
VTPAAIINLL	10	Unmodified	_VTPAAIINLL_					0	0	0		nc|ENSG00000135297|Q9Y2Z2-2|MTO1;nc|ENSG00000135297|Q9Y2Z2-5|MTO1;ENSG00000135297|ENST00000498286|MTO1;nc|ENSG00000135297|Q9Y2Z2|MTO1;nc|ENSG00000135297|Q9Y2Z2-6|MTO1;ENST00000370308.8_1_6:74189644-74210455:+|nuORF	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	nc|ENSG00000135297|Q9Y2Z2-2|MTO1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7991943359375	2	512.823692	1023.63283	0.4105	0.00021052	-2.7103	-0.0013899	-2.2998	-0.0011794	512.8221666063464	19.487	0.14483	19.487	19.366	19.511	0					4	2	2	0	0	0	0.03519	1	417	417		10.265	0	1	10678			88496	4873	61550	61652	98505	98505					0.12196077033843267
VTPAERGLV	9	Unmodified	_VTPAERGLV_					0	0	0		ENST00000357085.4_2_6:25963311-25963422:+|nuORF	ENST00000357085.4_2_6:25963311-25963422:+|nuORF	ENST00000357085.4_2_6:25963311-25963422:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.2744445800781	2	471.274367	940.53418	0.37885	0.00017854	-0.56963	-0.00026845	-0.19079	-8.9913E-05	471.27400956075775	42.243	1.0032	42.269	41.857	42.861	0.026012					70	28	4	0	0	0	0.31247	1	3804	3804		73.975	0	1	7592500			88497	12688	61551	61653	98506	98506					0.0615347378881097
VTPAMELSP	9	Unmodified	_VTPAMELSP_					0	0	0		ENST00000488876.5_1_17:37814522-37819158:+|nuORF;ENST00000583582.5_1_17:37814522-37814894:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.2504577636719	2	472.741511	943.468469	0.15673	7.4094E-05	2.1699	0.0010258	2.3266	0.0010999	472.7422694493239	24.339	0.29747	24.124	23.999	24.296	-0.2151					10	6	2	0	0	0	0.024539	1	1040	1040		20.947	3.4789	1	96708			88498	15395	61552	61654	98507	98507					-0.005526834483930543
VTPDSSIGNSP	11	Unmodified	_VTPDSSIGNSP_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7692260742188	2	537.259111	1072.50367	0.18783	0.00010091	-1.061	-0.00057003	-0.87316	-0.00046911	537.2585601042721	87.166	0.50167	87.03	86.802	87.304	-0.13613					17	11	2	0	0	0	0.02475	1	10591	10591		21.686	0	1	92427	+		88499	20285	61553	61655	98508	98508					-0.029683493869015365
VTPEPRRT	8	Unmodified	_VTPEPRRT_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	478.2691345214844	2	478.269616	954.524678	0.33894	0.00016211	-0.013731	-6.567E-06	0.32521	0.00015554	478.2696034191027	101.26	0.56543	101.14	100.85	101.42	-0.12576					28	12	3	0	0	0	0.95679	1	12593	12593		44.117	4.864	1	407440			88500	872	61554	61656	98509	98509					0.045597055032772005
VTPKAWLRAT	10	Unmodified	_VTPKAWLRAT_					0	0	0		ENST00000367876.8_1_1:166819614-166821841:+|nuORF	ENST00000367876.8_1_1:166819614-166821841:+|nuORF	ENST00000367876.8_1_1:166819614-166821841:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.8356323242188	2	571.837665	1141.66078	-0.39388	-0.00022524	-3.4795	-0.0019897	-3.8734	-0.0022149	571.8356084251234	22.9	1.1049	22.715	22.325	23.43	-0.18539					31	24	2	0	0	0	1.118	1	852	852		30.318	1.1477	1	360240			88501	12876	61555	61657	98510	98510					0.09561400013922139
VTPLDQLY	8	Unmodified	_VTPLDQLY_					0	0	0			REV__ENSG00000163012|ENST00000295131|ZSWIM2	REV__ENSG00000163012|ENST00000295131|ZSWIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	474.75567626953125	2	474.755475	947.496398	0.035675	1.6937E-05	0.19534	9.2739E-05	0.23102	0.00010968	474.7554187715032	70.296	0.52921	70.045	69.69	70.22	-0.25108					30	12	3	0	0	0	0.74904	1	8191	8191		63.306	7.8021	1	1379900	+		88502	25521	61556	61658	98511	98511					0.020549628033336376
VTPLNMEP	8	Unmodified	_VTPLNMEP_					0	0	0			REV__ENST00000478402.5_1_1:226111340-226111810:-|nuORF	REV__ENST00000478402.5_1_1:226111340-226111810:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	451.2451477050781	2	450.728403	899.442254	0.34291	0.00015456	-2.9296	-0.0013205	-2.5867	-0.0011659	450.72712870883686	45.95	0.14539	45.854	45.741	45.887	-0.096653					5	3	2	0	0	0	0.027866	1	4385	4385		17.365	0.89182	1	32951	+		88503	24285	61557	61659	98512	98512					-0.01148952619882948
VTPMLKEGG	9	Unmodified	_VTPMLKEGG_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	465.2868347167969	2	466.249503	930.484453	-0.067637	-3.1536E-05	0.3701	0.00017256	0.30246	0.00014102	466.2493792825749	93.899	0.7207	93.899	93.602	94.322	0					30	17	3	0	0	0	0.02435	1	11940	11940		42.396	0	1	211430			88504	1544	61558	61660	98513	98513					0.016430227884939086
VTPQLSSPAP	10	Unmodified	_VTPQLSSPAP_					0	0	0		ENSG00000177427|ENST00000323019|MIEF2;nc|ENSG00000177427|Q96C03-3|MIEF2	ENSG00000177427|ENST00000323019|MIEF2	ENSG00000177427|ENST00000323019|MIEF2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	498.7712707519531	2	498.771657	995.528761	0.21295	0.00010622	-1.5928	-0.00079443	-1.3798	-0.00068822	498.7707660735286	104.97	1.7566	104.97	104.34	106.1	-0.0016022					133	55	5	0	0	0	1.1329	1	13397	13397		27.882	0	1	5105000			88505	8737	61559	61661	98514	98514					0.03081750206331435
VTPSIDLASF	10	Unmodified	_VTPSIDLASF_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.7089233398438	2	525.279315	1048.54408	-0.32027	-0.00016823	2.927	0.0015375	2.6068	0.0013693	525.2814600578656	43.017	0.2404	42.78	42.639	42.879	-0.23736					7	5	2	0	0	0	0.03519	1	3916	3916		32.812	7.2384	1	41426	+		88506	26705	61560	61662	98515	98515					0.02174617003538515
VTPSKIVTK	9	Unmodified	_VTPSKIVTK_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.7647399902344	2	486.808042	971.601532	-0.40515	-0.00019723	0.51383	0.00025014	0.10868	5.2905E-05	486.8080444022116	20.124	0.2921	20.019	19.837	20.129	-0.10477					6	5	2	0	0	0	0.024541	1	476	476		8.6937	0.45861	1	8299.1	+		88507	27569	61561	61663	98516	98516					0.11459503999753906
VTPSPTPEN	9	Unmodified	_VTPSPTPEN_					0	0	0		nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2;ENST00000509475.5_1_4:40892379-41016395:-|nuORF	nc|ENSG00000163697|Q92870-2|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.27447509765625	2	471.232364	940.450176	-0.42599	-0.00020074	0.34805	0.00016401	-0.077937	-3.6727E-05	471.2324404849769	48.833	0.61404	48.899	48.657	49.271	0.066795					23	16	2	0	0	0	0.024374	1	5002	5002		32.812	3.6629	1	165450			88508	7131	61562	61664	98517	98517					-0.022431020987710326
VTPSPTPEN	9	Unmodified	_VTPSPTPEN_					0	0	0		nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2;ENST00000509475.5_1_4:40892379-41016395:-|nuORF	nc|ENSG00000163697|Q92870-2|APBB2	nc|ENSG00000163697|Q92870-2|APBB2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	471.232364	940.450176	0.085216	4.0157E-05	-0.39826	-0.00018767	-0.31304	-0.00014752	471.23217168541	49.173	0.64352	49.021	48.611	49.254	-0.15277	0.057223	-0.00019023	NaN	40.778	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197880			88509	7131	61562	61664							-0.022431020987710326
VTPSRTTLVSL	11	Unmodified	_VTPSRTTLVSL_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	587.3428344726562	2	587.34552	1172.67649	-0.82621	-0.00048527	-4.4647	-0.0026223	-5.2909	-0.0031076	587.34280596375	88.797	0.86877	88.626	88.297	89.165	-0.17054					47	20	3	0	0	0	0.79111	1	10840	10840		58.23	6.8945	1	696660	+		88510	22385	61563	61665	98518	98518					0.09705641740333704
VTPSRTTLVSL	11	Unmodified	_VTPSRTTLVSL_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.3427734375	2	587.34552	1172.67649	-0.81423	-0.00047823	-4.3071	-0.0025297	-5.1213	-0.003008	587.342874849692	88.768	1.0897	88.637	88.277	89.367	-0.13135					61	25	4	0	0	0	0.98542	1	10828	10828		40.058	0	1	715880	+		88511	22385	61563	61665	98519	98519					0.09705641740333704
VTPSTLKLVV	10	Unmodified	_VTPSTLKLVV_					0	0	0			REV__ENST00000156825.5_1_19:1577617-1577782:-|nuORF	REV__ENST00000156825.5_1_19:1577617-1577782:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	529.2974853515625	2	528.8368	1055.65905	-0.6125	-0.00032391	0.38852	0.00020547	-0.22398	-0.00011845	528.8371111396012	56.178	0.61738	56.276	55.999	56.616	0.097893					19	16	2	0	0	0	0.03519	1	6138	6138		39.253	6.4404	1	158040	+		88512	29270	61564	61666	98520	98520					0.13344346205326474
VTPVDEGELE	10	Unmodified	_VTPVDEGELE_					0	0	0		nc|ENSG00000088756|Q9P2N2-2|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28	nc|ENSG00000088756|Q9P2N2-2|ARHGAP28	nc|ENSG00000088756|Q9P2N2-2|ARHGAP28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	544.2977905273438	2	544.261319	1086.50808	-1.3576	-0.00073888	1.8739	0.0010199	0.51632	0.00028101	544.7649874337905	53.922	0.14691	53.786	53.721	53.867	-0.13617					5	4	2	0	0	0	0.03519	1	5677	5677		32.812	11.865	1	97829			88513	1873	61565	61667	98521	98521					-0.03170884963969911
VTPVELHKS	9	Unmodified	_VTPVELHKS_					0	0	0		nc|ENSG00000019186|Q07973-3|CYP24A1;ENSG00000019186|ENST00000216862|CYP24A1;ENST00000487593.1_1_20:52779237-52781081:-|nuORF;nc|ENSG00000019186|Q07973-2|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2975769042969	2	505.287474	1008.5604	-0.64606	-0.00032645	2.7817	0.0014055	2.1356	0.0010791	505.2883943442747	62.266	0.24481	62.037	61.836	62.081	-0.22907					8	6	2	0	0	0	0.024523	1	7183	7183		21.96	0	1	110760			88514	947	61566	61668	98522	98522					0.05645742960280131
VTQDKGSPH	9	Unmodified	_VTQDKGSPH_					0	0	0			REV__ENSG00000146376|ENST00000368149|ARHGAP18	REV__ENSG00000146376|ENST00000368149|ARHGAP18	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	483.8799133300781	2	484.743431	967.472308	-0.64936	-0.00031477	4.4141	0.0021397	3.7647	0.0018249	484.745430781513	43.631	0.65027	43.412	43.176	43.826	-0.21939					40	17	4	0	0	0	0.024381	1	4031	4031		29.15	3.6994	1	1612000	+		88515	24481	61567	61669	98523	98523					-0.012728776303333689
VTQENFVDM	9	Oxidation (M)	_VTQENFVDM(Oxidation (M))_		VTQENFVDM(1)		VTQENFVDM(99)	0	0	1		ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.7403564453125	2	549.742239	1097.46993	-0.21369	-0.00011747	-2.7442	-0.0015086	-2.9579	-0.0016261	549.7405228636185	42.653	0.93998	42.536	42.201	43.141	-0.11697					56	24	4	0	0	0	0.15366	1	3872	3872		98.629	13.27	1	2446300			88516	8461	61568	61670	98524	98524		350			-0.07491094150327626
VTQGEAKEEHS	11	Unmodified	_VTQGEAKEEHS_					0	0	0			REV__ENST00000503128.5_2_4:1920118-1920160:+|nuORF	REV__ENST00000503128.5_2_4:1920118-1920160:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	405.7398376464844	3	405.526441	1213.55749	0.49547	0.00020093	4.2217	0.001712	4.7172	0.0019129	405.5278366227052	32.2	0.92736	31.963	31.411	32.339	-0.23667					30	21	2	0	0	0	0.02473	1	2132	2132		33.039	0	1	109480	+		88517	33948	61569	61671	98525	98525					-0.04074176955191433
VTQHKFLD	8	Unmodified	_VTQHKFLD_					0	0	0			REV__ENSG00000083814|ENST00000317398|ZNF671	REV__ENSG00000083814|ENST00000317398|ZNF671	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3117980957031	2	494.266542	986.51853	-0.20912	-0.00010336	3.5342	0.0017468	3.3251	0.0016435	494.2679870757157	80.933	0.7287	80.695	80.409	81.138	-0.23784					34	17	3	0	0	0	0.027866	1	9682	9682		53.351	2.016	1	198080	+		88518	20723	61570	61672	98526	98526					0.024731872717552505
VTQIETQF	8	Unmodified	_VTQIETQF_					0	0	0			REV__nc|ENSG00000115866|P14868-2|DARS1	REV__nc|ENSG00000115866|P14868-2|DARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	483.293212890625	2	483.250557	964.486562	-0.81742	-0.00039502	2.3133	0.0011179	1.4959	0.0007229	483.25138404849963	57.779	0.35926	57.874	57.763	58.122	0.09531					24	9	3	0	0	0	0.027866	1	6429	6429		38.806	0	1	1071300	+		88519	22238	61571	61673	98527	98527					0.002897747979432097
VTQILLPLLD	10	Unmodified	_VTQILLPLLD_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.7333984375	2	562.849907	1123.68526	-0.064861	-3.6507E-05	1.5893	0.00089453	1.5244	0.00085802	562.8503395404475	78.638	0.34486	78.384	78.212	78.557	-0.25471					12	7	2	0	0	0	0.03519	1	9389	9389		19.997	11.303	1	64500	+		88520	20842	61572	61674	98528	98528					0.12836615376795635
VTQILVALR	9	Unmodified	_VTQILVALR_					0	0	0		ENSG00000115825|ENST00000234179|PRKD3	ENSG00000115825|ENST00000234179|PRKD3	ENSG00000115825|ENST00000234179|PRKD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.82781982421875	2	506.829309	1011.64407	0.35575	0.00018031	-2.9904	-0.0015156	-2.6346	-0.0013353	506.82766891796035	17.443	0.36868	17.301	17.134	17.503	-0.14278					18	7	3	0	0	0	0.53979	1	166	166		56.721	3.7844	1	302900			88521	3492	61573	61675	98529	98529					0.1387089912797137
VTQKDDMM	8	2 Oxidation (M)	_VTQKDDM(Oxidation (M))M(Oxidation (M))_		VTQKDDM(1)M(1)		VTQKDDM(89)M(89)	0	0	2		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.2073974609375	2	500.209718	998.404882	-0.436	-0.00021809	-3.3414	-0.0016714	-3.7774	-0.0018895	500.2079506695023	43.599	4.2786	43.488	42.246	46.524	-0.11145					274	116	3	0	0	0	0.46709	1	4030	4030		88.643	10.699	1	7873800			88522	10074	61574	61676	98530	98530		422;423			-0.09438411947814984
VTQKDSSSEM	10	Unmodified	_VTQKDSSSEM_					0	0	0		ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2905883789062	2	556.250428	1110.4863	-0.93084	-0.00051778	0.32383	0.00018013	-0.60701	-0.00033765	556.2501016190964	60.984	0.39676	60.808	60.559	60.955	-0.1761					12	9	2	0	0	0	0.03519	1	6780	6780		20.947	14.211	1	121060			88523	2392	61575	61677	98531	98531					-0.06452012984209432
VTQLKQKL	8	Unmodified	_VTQLKQKL_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.30767822265625	2	479.30821	956.601866	0.56235	0.00026954	-0.28344	-0.00013585	0.27891	0.00013368	479.30780494963574	20.75	0.88654	20.554	20.088	20.975	-0.19577					49	17	4	0	0	0	0.39824	2	577	577;588		97.473	0	1	500060	+		88524	28931	61576	61678	98532;98533	98532					0.12182923719592509
VTQLKQKL	8	Unmodified	_VTQLKQKL_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	479.30821	956.601866	-0.22447	-0.00010759	0.56497	0.00027079	0.3405	0.0001632	479.30824969306997	20.633	0.24344	20.528	20.326	20.569	-0.10477	-0.017901	0.00065939	NaN	97.473	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14645	+		88525	28931	61576	61678							0.12182923719592509
VTQLKQKL	8	Unmodified	_VTQLKQKL_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	479.30821	956.601866	1.1086	0.00053137	-1.8139	-0.00086942	-0.70528	-0.00033804	479.3074752126802	20.469	0.24584	20.537	20.415	20.661	0.068901	-0.008745	-0.001621	NaN	97.473	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10452	+		88526	28931	61576	61678							0.12182923719592509
VTQLQLET	8	Unmodified	_VTQLQLET_					0	0	0		ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2725524902344	2	466.258382	930.502212	-0.53557	-0.00024971	0.71336	0.00033261	0.17779	8.2898E-05	466.2585647548466	36.033	0.62606	35.828	35.616	36.242	-0.20518					35	17	3	0	0	0	0.027866	1	2828	2828		29.15	1.2673	1	1260600			88527	15898	61577	61679	98534	98534					0.034180613149942474
VTQLQLET	8	Unmodified	_VTQLQLET_					0	0	0		ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.258382	930.502212	-1.1249	-0.00052451	1.6063	0.00074897	0.48139	0.00022445	466.2589300559732	36.012	0.76758	36.012	35.531	36.298	0	0.11869	0.0011833	NaN	14.137	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1499200			88528	15898	61577	61679							0.034180613149942474
VTQLQLET	8	Unmodified	_VTQLQLET_					0	0	0		ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	466.258382	930.502212	-0.96573	-0.00045028	1.4653	0.00068319	0.49954	0.00023292	466.2588839755678	35.891	0.87472	35.848	35.405	36.28	-0.042454	-0.045322	0.0010517	NaN	14.137	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1580500			88529	15898	61577	61679							0.034180613149942474
VTQLQLET	8	Unmodified	_VTQLQLET_					0	0	0		ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	ENST00000515347.2_1_5:79584647-79585058:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.258382	930.502212	0.26479	0.00012346	0.23576	0.00010992	0.50055	0.00023339	466.25826681833354	35.933	1.0771	35.977	35.267	36.344	0.044056	0.083572	-9.4793E-05	NaN	14.137	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335900			88530	15898	61577	61679							0.034180613149942474
VTQLTLEVL	9	Unmodified	_VTQLTLEVL_					0	0	0		nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	508.2921447753906	2	508.305332	1014.59611	-0.043595	-2.216E-05	1.3224	0.00067217	1.2788	0.00065001	508.30577034865235	50.379	0.16579	50.46	50.344	50.51	0.08099					5	4	2	0	0	0	0.024319	1	5189	5189		47.657	3.5405	1	495290			88531	9392	61578	61680	98535	98535					0.08939780417290422
VTQMLEHS	8	Unmodified	_VTQMLEHS_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9|TBC1D30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.2535400390625	2	472.728935	943.443317	-0.58194	-0.0002751	0.85861	0.00040589	0.27667	0.00013079	472.72916263589775	30.076	0.78767	30.15	29.962	30.75	0.074314					27	18	2	0	0	0	0.027866	1	1890	1890		24.203	0	1	900050	+		88532	37221	61579	61681	98536	98536					-0.030667382509818708
VTQQSEKH	8	Unmodified	_VTQQSEKH_					0	0	0		nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	478.743431	955.472308	-0.37397	-0.00017904	1.0684	0.00051149	0.69442	0.00033245	478.7436652385781	25.752	0.68013	25.718	25.392	26.072	-0.034397					43	15	4	0	0	0	0.027866	1	1262	1262		53.351	2.016	1	453800			88533	5654	61580	61682	98537	98537					-0.007208776303286868
VTQTQCPVPC	10	Unmodified	_VTQTQCPVPC_					0	0	0			REV__ENSG00000198854|ENST00000368775|C1orf68	REV__ENSG00000198854|ENST00000368775|C1orf68	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	538.776611328125	2	538.249177	1074.4838	-1.0892	-0.00058626	-1.6961	-0.00091293	-2.7853	-0.0014992	538.2481190209123	57.347	1.0501	57.113	56.652	57.702	-0.23363					50	27	2	0	0	0	0.03519	1	6258	6258		47.657	12.039	1	237170	+		88534	28500	61581	61683	98538	98538					-0.050461399228652226
VTQVGGSPPM	10	Unmodified	_VTQVGGSPPM_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	486.7425842285156	2	486.744585	971.474617	0.078387	3.8155E-05	-3.4888	-0.0016981	-3.4104	-0.00166	486.7427641829839	42.114	1.4764	41.884	41.508	42.985	-0.2303					91	39	4	0	0	0	0.40067	1	3745	3745		98.629	2.4389	1	7205300	+		88535	28095	61582	61684	98539	98539					-0.01226165216883146
VTQVKKCKT	9	Unmodified	_VTQVKKCKT_					0	0	0			REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	REV__KIF24|p.S913Rfs*31|1|0.11|ENSG00000186638|chr9:34256865-34256868|CTTA/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	518.7926025390625	2	517.804977	1033.5954	0.8197	0.00042445	-3.6063	-0.0018673	-2.7866	-0.0014429	517.8028125118494	51.302	0.27591	51.19	51.051	51.327	-0.11163					10	6	2	0	0	0	0.024523	1	5284	5284		29.15	0	1	121980	+		88536	27873	61583	61685	98540	98540					0.07994662496594174
VTQVLKQH	8	Unmodified	_VTQVLKQH_					0	0	0		nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2	nc|ENSG00000087903|P48378-2|RFX2	nc|ENSG00000087903|P48378-2|RFX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.29327392578125	2	476.782359	951.550165	-0.71262	-0.00033976	0.029209	1.3926E-05	-0.68341	-0.00032584	476.782499177073	47.462	0.91312	47.522	46.918	47.831	0.059097					76	26	5	0	0	0	0.027866	1	4616	4616		23.042	10.083	1	3324800			88537	1857	61584	61686	98541	98541					0.07245180025699938
VTQVLKQH	8	Unmodified	_VTQVLKQH_					0	0	0		nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2	nc|ENSG00000087903|P48378-2|RFX2	nc|ENSG00000087903|P48378-2|RFX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	476.782359	951.550165	0.51577	0.00024591	-0.46345	-0.00022096	0.052324	2.4947E-05	476.7819168166844	47.51	0.79874	47.51	47.076	47.875	0	-0.0027198	3.0044E-06	NaN	23.042	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2953400			88538	1857	61584	61686							0.07245180025699938
VTQVLKQH	8	Unmodified	_VTQVLKQH_					0	0	0		nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2	nc|ENSG00000087903|P48378-2|RFX2	nc|ENSG00000087903|P48378-2|RFX2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	476.782359	951.550165	0.3284	0.00015658	-0.9019	-0.00043001	-0.5735	-0.00027344	476.7820221192347	47.659	0.62778	47.506	47.231	47.858	-0.15301	-0.0063034	-0.00041509	NaN	23.042	64	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2885800			88539	1857	61584	61686							0.07245180025699938
VTQYHLLVP	9	Unmodified	_VTQYHLLVP_					0	0	0			REV__ENST00000527005.5_1_6:135286419-135303731:-|nuORF	REV__ENST00000527005.5_1_6:135286419-135303731:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.2959594726562	2	535.305667	1068.59678	-0.40846	-0.00021865	0.45405	0.00024305	0.045581	2.44E-05	535.3056666483432	63.437	0.8077	63.186	62.851	63.659	-0.25141					52	21	3	0	0	0	0.024294	1	7369	7369		55.504	28.811	1	2973200	+		88540	21997	61585	61687	98542	98542					0.06522619856968959
VTRALERR	8	Unmodified	_VTRALERR_					0	0	0		RPP38|p.E237Pfs*20|1|0.05|ENSG00000152464|chr10:15104022-15104023|-/CCACA|frameshift_variant;ENSG00000152464|ENST00000378197|RPP38	RPP38|p.E237Pfs*20|1|0.05|ENSG00000152464|chr10:15104022-15104023|-/CCACA|frameshift_variant	RPP38|p.E237Pfs*20|1|0.05|ENSG00000152464|chr10:15104022-15104023|-/CCACA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.2783508300781	2	500.804157	999.593761	-1.3165	-0.00065933	3.3689	0.0016872	2.0524	0.0010278	500.80551654006564	60.611	0.60037	60.69	60.429	61.029	0.078888					40	15	3	0	0	0	0.027866	1	6928	6928		35.618	0	1	871810			88541	6274	61586	61688	98543	98543					0.09394789522843894
VTRDIVENW	9	Unmodified	_VTRDIVENW_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.2940063476562	2	566.293288	1130.57202	0.050354	2.8515E-05	-1.5105	-0.00085536	-1.4601	-0.00082684	566.2923895776767	54.46	0.83062	54.215	54.01	54.841	-0.2453					43	23	3	0	0	0	0.35556	1	5791	5791		68.846	5.3123	1	3433500			88542	3993	61587	61689	98544	98544					0.011959399835859585
VTRDIVENW	9	Unmodified	_VTRDIVENW_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	566.293288	1130.57202	0.45818	0.00025946	-1.8223	-0.001032	-1.3641	-0.0007725	566.2922246825858	54.397	0.91967	54.191	53.947	54.866	-0.20613	-0.012365	-0.00034813	NaN	68.846	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2903900			88543	3993	61587	61689							0.011959399835859585
VTREPLFES	9	Unmodified	_VTREPLFES_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENST00000466151.1_1_1:17402167-17409162:-|nuORF	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	538.7930908203125	2	539.282389	1076.55022	-1.0375	-0.00055952	-1.1956	-0.00064478	-2.2331	-0.0012043	539.2819969807849	51.37	0.42393	51.221	51.118	51.542	-0.14916					16	11	2	0	0	0	0.024405	1	5404	5404		20.947	0.95016	1	209560			88544	3608	61588	61690	98545	98545					0.01501135235048423
VTRGPGLAR	9	Unmodified	_VTRGPGLAR_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.2533874511719	2	463.780151	925.545748	0.11237	5.2114E-05	4.2509	0.0019715	4.3633	0.0020236	463.7814813398065	78.804	1.1591	78.612	78.096	79.255	-0.1921					39	27	2	0	0	0	0.024447	1	9715	9715		8.6937	5.5345	1	447500	+		88545	21526	61589	61691	98546	98546					0.07999715602795732
VTRGQNKP	8	Unmodified	_VTRGQNKP_					0	0	0			REV__MAP6|p.I741T|1|0.25|ENSG00000171533|chr11:75587279-75587279|A/G|missense_variant	REV__MAP6|p.I741T|1|0.25|ENSG00000171533|chr11:75587279-75587279|A/G|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2640686035156	2	450.256508	898.498464	0.55031	0.00024778	-4.0782	-0.0018362	-3.5279	-0.0015885	450.2547000059867	61.557	0.38871	61.33	61.261	61.65	-0.22663					16	9	2	0	0	0	0.027866	1	7093	7093		71.296	10.324	1	357550	+		88546	36351	61590	61692	98547	98547					0.04515436331791989
VTRIDGTID	9	Unmodified	_VTRIDGTID_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.28656005859375	2	495.266739	988.518924	0.035643	1.7653E-05	-2.2156	-0.0010973	-2.18	-0.0010797	495.26633680339626	67.108	0.48511	67.108	66.841	67.326	0					15	11	2	0	0	0	0.023061	1	8014	8014		90.37	0	1	172630			88547	10159	61591	61693	98548	98548					0.024205622009503713
VTRKIGGNQL	10	Unmodified	_VTRKIGGNQL_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	543.7980346679688	2	543.324922	1084.63529	-0.86227	-0.00046849	-2.026	-0.0011008	-2.8883	-0.0015693	543.3231323304574	72.116	0.78644	71.916	71.624	72.41	-0.20014					56	18	5	0	0	0	0.03519	1	8399	8399		49.536	3.5638	1	1121700	+		88548	26290	61592	61694	98549	98549					0.09635925491511443
VTRLSTSPI	9	Unmodified	_VTRLSTSPI_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.28729248046875	2	487.287474	972.560395	-0.65151	-0.00031747	0.17095	8.3302E-05	-0.48056	-0.00023417	487.28750584322256	38.683	0.7411	38.462	38.187	38.928	-0.22148					49	19	4	0	0	0	0.15889	1	3207	3207		97.473	3.4663	1	5546400			88549	9025	61593	61695	98550	98550					0.0730174296027144
VTRLSTSPI	9	Unmodified	_VTRLSTSPI_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.H10844Pfs*2|1|0.29|ENSG00000181143|chr19:8938426-8938427|-/A|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.2874450683594	2	487.287474	972.560395	0.091122	4.4403E-05	-0.584	-0.00028458	-0.49288	-0.00024017	487.28711097165416	38.689	0.76622	38.463	38.143	38.909	-0.2257					53	20	4	0	0	0	0.31247	1	3208	3208		73.975	6.4811	1	5171100			88550	9025	61593	61695	98551	98551					0.0730174296027144
VTRMTVSLVV	10	Unmodified	_VTRMTVSLVV_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4;nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3;nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5;nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000073464|P51793-2|CLCN4;nc|ENSG00000171365|P51795-1|CLCN5;nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8048095703125	2	552.825909	1103.63727	0.74793	0.00041347	-4.2112	-0.002328	-3.4632	-0.0019146	552.8232966748949	68.067	0.57149	67.812	67.538	68.109	-0.25516					21	13	2	0	0	0	0.03519	1	7877	7877		37.812	0	1	156270			88551	1507;8142;18166	61594	61696	98552	98552					0.08959218185100326
VTRNTGLIL	9	Unmodified	_VTRNTGLIL_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	494.28533935546875	2	493.803291	985.59203	-1.0094	-0.00049844	0.85292	0.00042118	-0.15648	-7.7269E-05	493.80360306904834	51.715	0.93671	51.802	51.544	52.481	0.087006					57	24	4	0	0	0	0.024319	1	5389	5389		47.657	0	1	3505200			88552	6159	61595	61697	98553	98553					0.09865735714231505
VTRPIEKL	8	Unmodified	_VTRPIEKL_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	478.30029296875	2	478.300384	954.586216	0.68218	0.00032629	-0.42685	-0.00020416	0.25533	0.00012212	478.30004474971287	65.426	1.0209	65.426	65.124	66.145	0					71	27	4	0	0	0	0.74904	1	7791	7791		63.306	0	1	3881900			88553	7430	61596	61698	98554	98554					0.10710637202555517
VTRPIEKL	8	Unmodified	_VTRPIEKL_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	478.30096435546875	2	478.300384	954.586216	0.16459	7.8724E-05	0.031339	1.499E-05	0.19593	9.3714E-05	478.30026947860597	65.818	1.1665	65.546	65.055	66.221	-0.27282					82	31	4	0	0	0	0.6248	1	7791	7791		73.975	7.5455	1	4858100			88554	7430	61596	61698	98555	98555					0.10710637202555517
VTRPLRVPL	9	Unmodified	_VTRPLRVPL_					0	0	0		ENST00000480897.5_1_1:227921262-227921628:+|nuORF	ENST00000480897.5_1_1:227921262-227921628:+|nuORF	ENST00000480897.5_1_1:227921262-227921628:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	526.2640380859375	2	525.842751	1049.67095	-0.40949	-0.00021533	0.37914	0.00019937	-0.030342	-1.5955E-05	525.8427787003972	55.996	0.44037	55.84	55.591	56.031	-0.15601					16	11	2	0	0	0	0.024418	1	6208	6208		7.8045	0	1	94285			88555	15216	61597	61699	98556	98556					0.1481000773917458
VTRPTGVSF	9	Unmodified	_VTRPTGVSF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2666015625	2	482.266542	962.51853	-0.23752	-0.00011455	-0.027672	-1.3345E-05	-0.26519	-0.00012789	482.2663625704433	45.833	0.95085	45.572	45.249	46.2	-0.26118					54	25	3	0	0	0	0.1158	2	4368	4357;4368		107.01	21.54	1	2236200			88556	4087	61598	61700	98557;98558	98558					0.03577187271764615
VTRPTGVSF	9	Unmodified	_VTRPTGVSF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.2668151855469	2	482.266542	962.51853	-0.51299	-0.0002474	0.28919	0.00013946	-0.2238	-0.00010793	482.26651400214473	45.745	0.70389	45.542	45.226	45.93	-0.20226					49	19	4	0	0	0	0.22902	1	4355	4355		85.161	8.3867	1	2375800			88557	4087	61598	61700	98559	98559					0.03577187271764615
VTRQGALW	8	Unmodified	_VTRQGALW_					0	0	0		ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	ENSG00000204152|ENST00000651259|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7611999511719	2	465.761426	929.5083	-0.65659	-0.00030581	0.11714	5.4557E-05	-0.53945	-0.00025126	465.7613793035294	45.091	1.0815	44.991	44.513	45.594	-0.099445					91	29	4	0	0	0	0.2677	5	4259	4223;4236;4247;4259;4272		125.81	35.037	1	8685800			88558	8812	61599	61701	98560;98561;98562;98563;98564	98563					0.04072624337175057
VTRQGALW	8	Unmodified	_VTRQGALW_					0	0	0		ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	ENSG00000204152|ENST00000651259|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.76129150390625	2	465.761426	929.5083	-0.15227	-7.0921E-05	-0.34844	-0.00016229	-0.50071	-0.00023321	465.76116528146247	45.254	1.0121	45.002	44.59	45.602	-0.25252					93	27	4	0	0	0	0.29644	5	4263	4243;4252;4263;4276;4291		113.41	33.961	1	9034500			88559	8812	61599	61701	98565;98566;98567;98568;98569	98567					0.04072624337175057
VTRQGALW	8	Unmodified	_VTRQGALW_					0	0	0		ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	ENSG00000204152|ENST00000651259|TIMM23B	ENSG00000204152|ENST00000651259|TIMM23B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.761474609375	2	465.761426	929.5083	-0.5251	-0.00024457	0.14771	6.8797E-05	-0.37739	-0.00017578	465.7613767371387	45.25	0.84211	45.039	44.677	45.519	-0.21109					80	23	4	0	0	0	0.2677	5	4277	4240;4251;4263;4277;4291		125.81	35.037	1	9337700			88560	8812	61599	61701	98570;98571;98572;98573;98574	98573					0.04072624337175057
VTRRLLPC	8	Unmodified	_VTRRLLPC_					0	0	0			REV__ENST00000441964.1_1_3:43122946-43132044:-|nuORF	REV__ENST00000441964.1_1_3:43122946-43132044:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	479.246337890625	2	479.286754	956.558955	1.3296	0.00063725	1.8183	0.00087147	3.1478	0.0015087	479.28711986872463	51.23	0.19821	51.118	51.051	51.249	-0.11163					5	4	2	0	0	0	0.027866	1	5270	5270		31.955	0	1	81163	+		88561	32552	61600	61702	98575	98575					0.0789383039053746
VTRRVLVP	8	Unmodified	_VTRRVLVP_					0	0	0			REV__ENST00000449337.6_1_15:60806889-60806928:-|nuORF	REV__ENST00000449337.6_1_15:60806889-60806928:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	471.2740783691406	2	470.308544	938.602535	0.19047	8.9579E-05	-0.3196	-0.00015031	-0.12913	-6.0733E-05	470.3082574164304	42.276	0.40324	42.143	42.017	42.42	-0.13219					18	11	2	0	0	0	0.027866	1	3851	3851		50.025	0	1	174920	+		88562	32674	61601	61703	98576	98576					0.13077763159310507
VTRSLLAEV	9	Unmodified	_VTRSLLAEV_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.2948303222656	2	494.295299	986.576045	-0.16251	-8.033E-05	0.17577	8.6885E-05	0.013262	6.5551E-06	494.29531313203523	53.212	1.0062	53.085	52.753	53.759	-0.12705					56	27	4	0	0	0	0.42604	1	5570	5570		64.207	11.271	1	2571500	+		88563	20613	61602	61704	98577	98577					0.08222029477326487
VTRSLLAEV	9	Unmodified	_VTRSLLAEV_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.294921875	2	494.295299	986.576045	0.16279	8.0464E-05	-0.087593	-4.3297E-05	0.075192	3.7167E-05	494.29514094911957	53.427	0.88977	53.168	52.843	53.733	-0.25838					50	24	3	0	0	0	0.67687	1	5598	5598		47.657	1.7054	1	2485800	+		88564	20613	61602	61704	98578	98578					0.08222029477326487
VTRSRHSE	8	Unmodified	_VTRSRHSE_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.7648620605469	2	486.254497	970.494441	0.57737	0.00028075	-0.91535	-0.00044509	-0.33798	-0.00016434	486.2541226749545	19.393	0.51668	19.393	19.218	19.735	0					21	10	4	0	0	0	0.027866	1	438	438		37.159	0	1	83041	+		88565	25603	61603	61705	98579	98579					0.008013468380909217
VTRSSFLW	8	Unmodified	_VTRSSFLW_					0	0	0		ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.2694396972656	2	498.269084	994.523616	-0.32197	-0.00016043	0.27588	0.00013746	-0.046097	-2.2969E-05	498.2691375450449	60.957	0.7541	60.751	60.463	61.217	-0.20599					29	18	2	0	0	0	0.85395	1	6813	6813		54.776	3.4409	1	1156800			88566	13041	61604	61706	98580	98580					0.026134911343774547
VTRSSFLW	8	Unmodified	_VTRSSFLW_					0	0	0		ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	498.269084	994.523616	-0.95983	-0.00047826	0.82295	0.00041005	-0.13689	-6.8207E-05	498.2693657450643	60.767	0.7164	60.591	60.322	61.038	-0.1761	-0.095339	0.0001427	NaN	54.776	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1029100			88567	13041	61604	61706							0.026134911343774547
VTRSSFLW	8	Unmodified	_VTRSSFLW_					0	0	0		ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	ENST00000372455.4_1_1:43852626-43853250:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	498.269084	994.523616	-1.0433	-0.00051982	0.88164	0.00043929	-0.16162	-8.0531E-05	498.2694452800476	60.97	1.1705	60.717	60.421	61.592	-0.25373	0.030328	0.00020118	NaN	54.776	40	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1195100			88568	13041	61604	61706							0.026134911343774547
VTRVASFSV	9	Unmodified	_VTRVASFSV_					0	0	0			REV__ENSG00000006283|ENST00000359106|CACNA1G	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.27410888671875	2	483.274367	964.53418	-0.53374	-0.00025794	0.0030889	1.4928E-06	-0.53065	-0.00025645	483.27440438118646	30.343	1.2938	30.352	30.002	31.296	0.0086689					85	30	4	0	0	0	0.48817	1	1921	1921		60.118	1.3363	1	9559800	+		88569	19828	61605	61707	98581	98581					0.05049473788812975
VTRYAITI	8	Unmodified	_VTRYAITI_					0	0	0		OGFOD3|p.G296V|1|0.21|ENSG00000181396|chr17:82392471-82392471|C/A|missense_variant	OGFOD3|p.G296V|1|0.21|ENSG00000181396|chr17:82392471-82392471|C/A|missense_variant	OGFOD3|p.G296V|1|0.21|ENSG00000181396|chr17:82392471-82392471|C/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.76434326171875	2	468.779285	935.544017	0.66634	0.00031237	-0.49767	-0.0002333	0.16867	7.9071E-05	468.7790105739418	71.464	0.87465	71.464	71.065	71.94	0					40	22	3	0	0	0	0.027866	1	8724	8724		24.203	7.7296	1	611210			88570	18904	61606	61708	98582	98582					0.0736666179416261
VTSANKKVP	9	Unmodified	_VTSANKKVP_					0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	472.2822570800781	2	472.282192	942.549831	0.88194	0.00041652	-1.1529	-0.00054452	-0.27101	-0.00012799	472.28150303486666	51.357	0.76683	51.177	50.87	51.637	-0.18071					45	19	3	0	0	0	0.29158	1	5275	5275		76.774	15.083	1	1492100	+		88571	28618	61607	61709	98583	98583					0.07625760305847962
VTSAQDPRA	9	Unmodified	_VTSAQDPRA_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	472.2822570800781	2	472.743431	943.472308	0.61909	0.00029267	3.2182	0.0015214	3.8373	0.001814	472.74484068274126	51.721	0.94556	51.537	50.981	51.927	-0.18404					47	24	3	0	0	0	0.024025	1	5275	5275		52.937	0	1	515960	+		88572	25354	61608	61710	98584	98584					-0.0016887763034674208
VTSCYFPID	9	Unmodified	_VTSCYFPID_					0	0	0		nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-7|MMS19;nc|ENSG00000155229|Q96T76-5|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	nc|ENSG00000155229|Q96T76-9|MMS19	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	522.75830078125	2	522.738968	1043.46338	-0.46549	-0.00024333	3.5813	0.0018721	3.1158	0.0016287	523.2430499837968	41.423	0.19436	41.193	41.119	41.313	-0.2303					5	4	2	0	0	0	0.024381	1	3640	3640		21.96	0	1	39225			88573	6459	61609	61711	98585	98585					-0.0566098731103466
VTSDLLVVM	9	Unmodified	_VTSDLLVVM_					0	0	0			REV__ENST00000604849.1_2_X:53172048-53172363:+|nuORF	REV__ENST00000604849.1_2_X:53172048-53172363:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	487.7740478515625	2	488.772811	975.531069	-0.22801	-0.00011145	-0.53169	-0.00025988	-0.75971	-0.00037132	488.7725486545748	56.189	0.45847	56.189	55.892	56.351	0					21	12	2	0	0	0	0.024436	1	6208	6208		30.504	1.3541	1	629030	+		88574	35912	61610	61712	98586	98586					0.04232462619791022
VTSDPENR	8	Unmodified	_VTSDPENR_					0	0	0		ENST00000474353.6_1_10:97106208-97250794:-|nuORF	ENST00000474353.6_1_10:97106208-97250794:-|nuORF	ENST00000474353.6_1_10:97106208-97250794:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	459.2688903808594	2	459.219788	916.425024	-0.25382	-0.00011656	-2.5647	-0.0011778	-2.8185	-0.0012943	459.21900379359727	48.254	0.37538	48.254	48.037	48.413	0					21	10	3	0	0	0	0.027866	1	4912	4912		35.618	3.6634	1	185260			88575	15031	61611	61713	98587	98587					-0.03653156901339116
VTSEHTYDF	9	Unmodified	_VTSEHTYDF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.740478515625	2	549.740554	1097.46655	-0.21369	-0.00011747	0.32158	0.00017679	0.10789	5.9313E-05	549.7405228636185	42.653	0.93998	42.536	42.201	43.141	-0.11697					56	24	4	0	0	0	0.13494	1	3860	3860		102.77	4.144	1	2446300			88576	7673	61612	61714	98588	98588					-0.0782802093265218
VTSEHTYDF	9	Unmodified	_VTSEHTYDF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.7405395507812	2	549.740554	1097.46655	-0.64704	-0.00035571	0.43104	0.00023696	-0.216	-0.00011874	549.7406462808289	42.831	1.1148	42.605	42.298	43.413	-0.22597					66	29	4	0	0	0	0.040175	1	3876	3876		133.47	26.462	1	2517800			88577	7673	61612	61714	98589	98589					-0.0782802093265218
VTSEHTYDF	9	Unmodified	_VTSEHTYDF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	549.740554	1097.46655	-0.39073	-0.0002148	0.28238	0.00015523	-0.10835	-5.9566E-05	549.7405271655618	42.816	1.1226	42.579	42.229	43.351	-0.23737	0.0056487	-6.9673E-05	NaN	133.47	65	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2468200			88578	7673	61612	61714							-0.0782802093265218
VTSEQLQNI	9	Unmodified	_VTSEQLQNI_					0	0	0			REV__ENST00000414608.1_1_7:65245149-65246358:+|nuORF	REV__ENST00000414608.1_1_7:65245149-65246358:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	516.2972412109375	2	516.272021	1030.52949	-0.50388	-0.00026014	2.3621	0.0012195	1.8582	0.00095934	516.2730062512264	26.933	0.60041	26.776	26.503	27.104	-0.15664					16	13	2	0	0	0	0.024344	1	1403	1403		30.318	8.632	1	92103	+		88579	32040	61613	61715	98590	98590					0.015445448553691676
VTSGPPPSIPY	11	Unmodified	_VTSGPPPSIPY_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.7926025390625	2	557.792589	1113.57063	-0.67889	-0.00037868	-1.7556	-0.00097926	-2.4345	-0.0013579	557.7924820497095	57.651	0.43268	57.474	57.242	57.675	-0.17775					17	10	2	0	0	0	0.75995	1	6308	6308		60.118	1.8883	1	2244000			88580	2166	61614	61716	98591	98591					0.01838305894852965
VTSHFTLL	8	Unmodified	_VTSHFTLL_					0	0	0			REV__ENST00000539542.5_2_5:118485906-118486047:+|nuORF	REV__ENST00000539542.5_2_5:118485906-118486047:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	460.2486572265625	2	459.258185	916.501818	0.87279	0.00040083	-2.8728	-0.0013194	-2.0001	-0.00091854	459.2561921689685	71.097	0.74551	71.097	70.744	71.489	0					26	18	2	0	0	0	0.027866	1	8622	8622		65.897	0	1	149670	+		88581	34733	61615	61717	98592	98592					0.04022686385815177
VTSKKQPSH	9	Unmodified	_VTSKKQPSH_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7038269042969	2	506.282723	1010.55089	-0.1053	-5.331E-05	2.4151	0.0012227	2.3098	0.0011694	506.784983868629	32.613	0.77724	32.376	32.173	32.95	-0.23667					30	18	2	0	0	0	0.024427	1	2273	2273		34.173	1.3601	1	109420	+		88582	36458	61616	61718	98593	98593					0.04603974674762412
VTSLAQVTV	9	Unmodified	_VTSLAQVTV_					0	0	0			REV__ENSG00000153086|ENST00000356140|ACMSD	REV__ENSG00000153086|ENST00000356140|ACMSD	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	459.2688293457031	2	459.26875	916.522947	-0.21243	-9.7564E-05	1.9382	0.00089017	1.7258	0.00079261	459.26972638972376	48.076	2.8724	48.143	46.888	49.76	0.066795					140	80	3	0	0	0	0.071379	1	4807	4807		120.87	5.4095	1	4532800	+		88583	24885	61617	61719	98594	98594					0.06134651694662807
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.29779052734375	2	495.297507	988.580462	-0.25367	-0.00012564	-0.56761	-0.00028114	-0.82128	-0.00040678	495.2972281531602	54.538	1.0702	54.538	54.214	55.284	0					125	30	6	0	0	0	0.033448	2	5996	5996;6009		138.83	11.364	1	63653000			88584	11057	61618	61720	98595;98596	98595					0.08571493900228688
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	495.297607421875	2	495.297507	988.580462	-0.047163	-2.336E-05	-0.52597	-0.00026051	-0.57314	-0.00028387	495.29723956209665	54.627	1.0767	54.476	54.156	55.232	-0.15036					123	30	6	0	0	0	0.033448	3	5947	5947;5959;6009		138.83	23.331	1	63112000			88585	11057	61618	61720	98597;98598;98599	98597					0.08571493900228688
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.2971496582031	2	495.297507	988.580462	-0.62355	-0.00030884	0.0039173	1.9402E-06	-0.61963	-0.0003069	495.29746831426183	54.586	1.0137	54.44	54.077	55.09	-0.14609					93	27	5	0	0	0	0.033448	2	5789	5789;5824		138.83	7.0709	1	22581000			88586	11057	61618	61720	98600;98601	98600					0.08571493900228688
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.29705810546875	2	495.297507	988.580462	-0.011885	-5.8864E-06	-0.69506	-0.00034426	-0.70694	-0.00035015	495.2971333216574	54.684	1.009	54.453	54.15	55.159	-0.23087					97	28	5	0	0	0	0.047345	1	5806	5806		129.68	2.2209	1	22934000			88587	11057	61618	61720	98602	98602					0.08571493900228688
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.297607421875	2	495.297507	988.580462	0.75628	0.00037458	-1.352	-0.00066964	-0.59573	-0.00029506	495.29680380908184	54.621	1.0905	54.414	54.087	55.177	-0.20613					103	29	5	0	0	0	0.016871	2	5811	5811;5837		152.47	25.009	1	20726000			88588	11057	61618	61720	98603;98604	98603					0.08571493900228688
VTSLQSGPALL	11	Unmodified	_VTSLQSGPALL_					0	0	0		ENST00000597969.5_1_19:49809336-49813046:-|nuORF	ENST00000597969.5_1_19:49809336-49813046:-|nuORF	ENST00000597969.5_1_19:49809336-49813046:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.30859375	2	543.313689	1084.61282	-0.23785	-0.00012923	4.2434	0.0023055	4.0056	0.0021763	543.315991107325	105	0.27573	104.84	104.66	104.94	-0.16484					15	10	2	0	0	0	0.024776	1	13053	13053		25.574	0	1	30743			88589	17462	61619	61721	98605	98605					0.07390281303219126
VTSLRSLPK	9	Unmodified	_VTSLRSLPK_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.75054931640625	2	500.811116	999.60768	-0.54269	-0.00027179	-0.10008	-5.0121E-05	-0.64277	-0.00032191	500.8110414731909	35.691	0.50535	35.493	35.169	35.674	-0.19829					18	13	2	0	0	0	0.024292	1	2734	2734		40.778	7.9657	1	262670			88590	9666	61620	61722	98606	98606					0.10786022231275183
VTSLRSLPK	9	Unmodified	_VTSLRSLPK_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	500.811116	999.60768	-0.52607	-0.00026346	0.23084	0.00011561	-0.29523	-0.00014785	500.81111671635085	35.72	0.42519	35.512	35.223	35.648	-0.20809	0.0095422	0.00015853	NaN	25.574	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182820			88591	9666	61620	61722							0.10786022231275183
VTSLSPNAL	9	Unmodified	_VTSLSPNAL_					0	0	0		ENST00000546227.5_3_12:122237782-122237935:-|nuORF	ENST00000546227.5_3_12:122237782-122237935:-|nuORF	ENST00000546227.5_3_12:122237782-122237935:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.2893981933594	2	451.2531	900.491647	-0.71747	-0.00032376	0.98089	0.00044263	0.26342	0.00011887	451.25344788664285	55.689	1.1007	55.787	55.409	56.51	0.098015					54	29	4	0	0	0	0.023454	1	6097	6097		62.107	5.3864	1	1370000			88592	16507	61621	61723	98607	98607					0.037420786605480316
VTSLTACLVD	10	Unmodified	_VTSLTACLVD_					0	0	0		ENST00000527590.5_1_11:119290120-119293859:-|nuORF;ENSG00000154096|ENST00000284240|THY1;ENST00000584021.1_1_11:119290746-119291154:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	ENST00000527590.5_1_11:119290120-119293859:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	510.78515625	2	511.26535	1020.51615	0.16485	8.4281E-05	-3.2317	-0.0016523	-3.0669	-0.001568	511.263718401169	86.952	0.92669	86.973	86.591	87.518	0.021255					35	21	2	0	0	0	0.03519	1	10879	10879		34.173	12.47	1	206460			88593	6379	61622	61724	98608	98608					0.006709707517757124
VTSPLTVEW	9	Unmodified	_VTSPLTVEW_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000411500.5_1_6:32520814-32525810:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	516.2738647460938	2	516.274032	1030.53351	0.33309	0.00017197	-0.47088	-0.0002431	-0.13778	-7.1135E-05	516.273765023943	79.925	0.75369	79.678	79.32	80.074	-0.2465					37	17	3	0	0	0	0.17455	3	9573	9563;9573;9592		94.006	20.032	1	803730			88594	9824	61623	61725	98609;98610;98611	98610					0.01946634349087617
VTSPLTVEW	9	Unmodified	_VTSPLTVEW_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000411500.5_1_6:32520814-32525810:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	516.2739868164062	2	516.274032	1030.53351	0.31741	0.00016387	-0.34385	-0.00017752	-0.026432	-1.3646E-05	516.2737187534925	79.938	0.70923	79.719	79.369	80.079	-0.21923					43	16	5	0	0	0	0.08613	2	9586	9586;9600		115.46	12.686	1	975290			88595	9824	61623	61725	98612;98613	98612					0.01946634349087617
VTSPLTVEW	9	Unmodified	_VTSPLTVEW_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000411500.5_1_6:32520814-32525810:-|nuORF;ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.274658203125	2	516.274032	1030.53351	0.14938	7.7119E-05	0.35199	0.00018172	0.50137	0.00025884	516.2739268311767	79.859	0.7916	79.708	79.321	80.112	-0.15051					52	18	4	0	0	0	0.18915	3	9538	9538;9547;9559		90.777	13.459	1	1033300			88596	9824	61623	61725	98614;98615;98616	98614					0.01946634349087617
VTSPVHMM	8	Unmodified	_VTSPVHMM_					0	0	0		ENSG00000204406|ENST00000642680|MBD5;nc|ENSG00000204406|Q9P267|MBD5;nc|ENSG00000204406|Q9P267-2|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.25079345703125	2	451.217149	900.419744	-0.54315	-0.00024508	0.15404	6.9507E-05	-0.38911	-0.00017557	451.2171704651682	35.682	0.46944	35.682	35.455	35.924	0					15	11	2	0	0	0	0.027866	1	2743	2743		44.531	33.02	1	60766			88597	10343	61624	61726	98617	98617					-0.034448752891421464
VTSQLQSRLV	10	Unmodified	_VTSQLQSRLV_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.83203125	2	565.830037	1129.64552	1.1835	0.00066966	2.5541	0.0014452	3.7375	0.0021148	565.8313761944572	17.659	0.3994	17.505	17.308	17.708	-0.15403					18	7	4	0	0	0	1.1161	1	218	218		30.569	0	1	116200	+		88598	19459	61625	61727	98618	98618					0.0858848842608495
VTSQLQSRLV	10	Unmodified	_VTSQLQSRLV_					0	0	0			REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	REV__chr7:135169060-135177208|339|11.36|0.17|6.03|-|1|TE_info:HERV3-int,HERV3-int_dup109,ERV1,LTR,donor,+,135177208,135180551|CYREN,None|13	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	565.830037	1129.64552	1.1835	0.00066966	2.5541	0.0014452	3.7375	0.0021148	565.8313761944572	17.659	0.3994	17.505	17.308	17.708	-0.15403	0	0	NaN	30.569	18	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116200	+		88599	19459	61625	61727							0.0858848842608495
VTSQLVAVE	9	Unmodified	_VTSQLVAVE_					0	0	0		ENST00000512128.1_1_5:115783482-115785381:+|nuORF	ENST00000512128.1_1_5:115783482-115785381:+|nuORF	ENST00000512128.1_1_5:115783482-115785381:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	473.76385498046875	2	473.266207	944.517862	-0.072443	-3.4285E-05	1.3559	0.00064171	1.2835	0.00060742	473.2665839316294	35.08	1.5644	35.124	34.675	36.24	0.04406					56	41	2	0	0	0	0.024292	1	2586	2586		58.782	29.632	1	610050			88600	15852	61626	61728	98619	98619					0.04338347832049294
VTSRRPASPP	10	Unmodified	_VTSRRPASPP_					0	0	0		ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	535.26904296875	2	534.301447	1066.58834	-0.46825	-0.00025019	-4.0158	-0.0021457	-4.4841	-0.0023958	534.2990261678964	76.552	1.0005	76.552	75.918	76.919	0					43	24	3	0	0	0	0.03519	1	9373	9373		52.937	17.785	1	1368800			88601	14601	61627	61729	98620	98620					0.05771065940348308
VTSRRPASPP	10	Unmodified	_VTSRRPASPP_					0	0	0		ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.301447	1066.58834	-0.82708	-0.00044191	-3.544	-0.0018936	-4.3711	-0.0023355	534.2994470773654	76.778	0.69084	76.549	76.081	76.772	-0.22843	0.054356	0.00033402	NaN	44.377	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1440300			88602	14601	61627	61729							0.05771065940348308
VTSRRPASPP	10	Unmodified	_VTSRRPASPP_					0	0	0		ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	534.301447	1066.58834	-0.19751	-0.00010553	-4.9715	-0.0026563	-5.169	-0.0027618	534.2984989949853	76.563	0.84262	76.575	76.015	76.857	0.011635	0.079696	-0.0011913	NaN	44.377	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1357500			88603	14601	61627	61729							0.05771065940348308
VTSRRPASPP	10	Unmodified	_VTSRRPASPP_					0	0	0		ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.301447	1066.58834	-0.059325	-3.1697E-05	-3.891	-0.002079	-3.9503	-0.0021107	534.2992505180098	76.73	0.46829	76.462	76.17	76.638	-0.26806	-0.033385	-3.6748E-05	NaN	44.377	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367240			88604	14601	61627	61729							0.05771065940348308
VTSRRPASPP	10	Unmodified	_VTSRRPASPP_					0	0	0		ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.301447	1066.58834	-0.18759	-0.00010023	-3.7138	-0.0019843	-3.9014	-0.0020845	534.2992079817448	76.691	0.59654	76.44	76.145	76.741	-0.25162	-0.055042	0.00015259	NaN	44.377	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367700			88605	14601	61627	61729							0.05771065940348308
VTSRRPASPP	10	Unmodified	_VTSRRPASPP_					0	0	0		ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.301447	1066.58834	-0.50519	-0.00026993	-4.5332	-0.0024221	-5.0384	-0.002692	534.2986294599476	76.561	0.99904	76.393	75.778	76.777	-0.16854	-0.10234	-0.00072297	NaN	44.377	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350880			88606	14601	61627	61729							0.05771065940348308
VTSSVPSLPL	10	Unmodified	_VTSSVPSLPL_					0	0	0		ENSG00000205085|ENST00000682356|GARIN1A;nc|ENSG00000205085|Q6NXP2|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	ENSG00000205085|ENST00000682356|GARIN1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.2884826660156	2	500.289682	998.564812	0.063365	3.1701E-05	-0.58634	-0.00029334	-0.52297	-0.00026164	500.2897012803123	94.993	1.1659	94.996	94.392	95.558	0.0033722					61	26	3	0	0	0	1.0393	1	12072	12072		40.778	1.972	1	301900			88607	10403	61628	61730	98621	98621					0.06547207383187015
VTSTGTGYCGL	11	Unmodified	_VTSTGTGYCGL_					0	0	0			REV__ENST00000418747.2_1_9:130876665-130876908:-|nuORF	REV__ENST00000418747.2_1_9:130876665-130876908:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2760620117188	2	529.744782	1057.47501	-0.63351	-0.0003356	-1.2019	-0.00063673	-1.8355	-0.00097232	529.7440968904698	49.113	0.38836	48.96	48.792	49.181	-0.15276					14	10	2	0	0	0	0.024738	1	5062	5062		19.997	0	1	68162	+		88608	32126	61629	61731	98622	98622					-0.05142790287686694
VTSTILQTI	9	Unmodified	_VTSTILQTI_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000451892.1_1_1:240307039-240307453:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.2892150878906	2	488.289682	974.564812	-0.081042	-3.9572E-05	0.22729	0.00011098	0.14625	7.1411E-05	488.2897882410437	72.042	0.81128	71.767	71.473	72.284	-0.27509					43	19	3	0	0	0	0.2508	1	8418	8418		82.241	13.454	1	1047400			88609	8534	61630	61732	98623	98623					0.0765120738318501
VTSTILQTI	9	Unmodified	_VTSTILQTI_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000451892.1_1_1:240307039-240307453:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	488.28936767578125	2	488.289682	974.564812	0.36982	0.00018058	-0.12838	-6.2686E-05	0.24144	0.00011789	488.2895143603081	72.006	0.93391	71.744	71.282	72.215	-0.262					48	22	4	0	0	0	0.2508	1	8433	8433		82.241	5.4664	1	900030			88610	8534	61630	61732	98624	98624					0.0765120738318501
VTSTILQTI	9	Unmodified	_VTSTILQTI_					0	0	0		ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000451892.1_1_1:240307039-240307453:-|nuORF	ENSG00000175166|ENST00000310118|PSMD2	ENSG00000175166|ENST00000310118|PSMD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	488.289682	974.564812	0.31807	0.00015531	-0.10149	-4.9559E-05	0.21658	0.00010575	488.2896021894873	71.906	0.73475	71.7	71.42	72.155	-0.20614	-0.036904	-0.00010865	NaN	82.241	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825240			88611	8534	61630	61732							0.0765120738318501
VTSTLPPLPL	10	Unmodified	_VTSTLPPLPL_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.8109130859375	2	519.3157	1036.61685	-1.9547	-0.0010151	-3.5498	-0.0018435	-5.5045	-0.0028586	519.3134118469028	60.521	1.2402	60.6	59.826	61.066	0.078888					67	32	4	0	0	0	0.03519	1	6876	6876		29.15	6.1071	1	2409700			88612	1322	61631	61733	98625	98625					0.10000370796956304
VTSTPAGKAAR	11	Unmodified	_VTSTPAGKAAR_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.801025390625	2	529.80128	1057.58801	-0.48766	-0.00025836	0.30812	0.00016324	-0.17955	-9.5124E-05	529.8014420218568	40.742	1.0802	40.742	40.212	41.292	0					70	30	4	0	0	0	0.44817	1	3597	3597		79.713	0.26157	1	8146100	+		88613	25910	61632	61734	98626	98626					0.06151646220496332
VTSTPAGKAAR	11	Unmodified	_VTSTPAGKAAR_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.80126953125	2	529.80128	1057.58801	0.36957	0.0001958	-0.75925	-0.00040225	-0.38968	-0.00020645	529.8008825330886	40.837	1.234	40.714	40.162	41.396	-0.12317					80	34	4	0	0	0	0.63824	1	3608	3608		67.494	3.2864	1	7153100	+		88614	25910	61632	61734	98627	98627					0.06151646220496332
VTSVAFLVQ	9	Unmodified	_VTSVAFLVQ_					0	0	0		ENSG00000107159|ENST00000378357|CA9;ENST00000485665.1_1_9:35680733-35681019:+|nuORF	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.7604675292969	2	482.279118	962.543683	-0.57588	-0.00027774	1.0873	0.00052438	0.51141	0.00024664	482.2795122549814	78.036	0.74113	78.052	77.739	78.48	0.015907					29	17	2	0	0	0	0.024209	1	9553	9553		56.721	19.562	1	356560			88615	2827	61633	61735	98628	98628					0.06091242074319325
VTSVCSKT	8	Unmodified	_VTSVCSKT_					0	0	0		PDLIM5|p.E215K|1|0.15|ENSG00000163110|chr4:94575967-94575967|G/A|missense_variant	PDLIM5|p.E215K|1|0.15|ENSG00000163110|chr4:94575967-94575967|G/A|missense_variant	PDLIM5|p.E215K|1|0.15|ENSG00000163110|chr4:94575967-94575967|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.7132568359375	2	412.712753	823.410954	0.34278	0.00014147	0.68969	0.00028465	1.0325	0.00042611	412.71294569661325	73.028	1.0619	73.028	72.454	73.516	0					63	26	4	0	0	0	1.0514	1	8896	8896		29.17	0.91578	1	4245300			88616	18956	61634	61736	98629	98629					-0.007815256539743132
VTSVCSKT	8	Unmodified	_VTSVCSKT_					0	0	0		PDLIM5|p.E215K|1|0.15|ENSG00000163110|chr4:94575967-94575967|G/A|missense_variant	PDLIM5|p.E215K|1|0.15|ENSG00000163110|chr4:94575967-94575967|G/A|missense_variant	PDLIM5|p.E215K|1|0.15|ENSG00000163110|chr4:94575967-94575967|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.712890625	2	412.712753	823.410954	0.28441	0.00011738	0.75503	0.00031161	1.0394	0.00042899	412.71296447434673	73.078	1.5698	73.088	71.988	73.558	0.0096512					84	39	4	0	0	0	1.0106	2	8828	8818;8828		35.618	2.3088	1	3549300			88617	18956	61634	61736	98630;98631	98631					-0.007815256539743132
VTSVILTT	8	Unmodified	_VTSVILTT_					0	0	0			REV__ENSG00000133687|ENST00000539277|TMTC1	REV__ENSG00000133687|ENST00000539277|TMTC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.8919677734375	2	417.252569	832.490584	-0.82274	-0.00034329	0.79907	0.00033341	-0.023665	-9.8743E-06	417.2524110078985	38.187	0.95093	37.965	37.466	38.417	-0.22149					44	26	3	0	0	0	0.027866	1	3103	3103		30.504	7.4612	1	549590	+		88618	23386	61635	61737	98632	98632					0.06763864291656319
VTSVIPDT	8	Unmodified	_VTSVIPDT_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.5729064941406	2	416.226551	830.438549	-0.40277	-0.00016764	4.275	0.0017794	3.8723	0.0016117	416.2286438468001	41.758	1.3371	41.53	41.197	42.534	-0.2278					85	35	4	0	0	0	0.027866	1	3699	3699		33.516	5.2613	1	5816500			88619	2912	61636	61738	98633	98633					0.016547008778957206
VTSVSLPPYT	10	Unmodified	_VTSVSLPPYT_					0	0	0		ENSG00000256980|ENST00000370388|KHDC1L	ENSG00000256980|ENST00000370388|KHDC1L	ENSG00000256980|ENST00000370388|KHDC1L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.8170166015625	2	532.28714	1062.55973	-0.24434	-0.00013006	3.1725	0.0016887	2.9281	0.0015586	532.2887065865652	86.881	0.67946	86.839	86.339	87.018	-0.04287					21	15	2	0	0	0	0.03519	1	10912	10912		49.442	7.0454	1	78684			88620	10912	61637	61739	98634	98634					0.030949035205594555
VTTASMSIGL	10	Unmodified	_VTTASMSIGL_					0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2579040527344	2	490.260068	978.505582	-0.27758	-0.00013609	-1.3999	-0.00068631	-1.6775	-0.00082239	490.2598634062466	102.19	1.7715	102.19	101.86	103.63	0					66	41	2	0	0	0	1.1267	1	13082	13082		29.15	0	1	458520	+		88621	26753	61638	61740	98635	98635					0.015469880973569161
VTTDVPFAI	9	Unmodified	_VTTDVPFAI_					0	0	0		ENSG00000158258|ENST00000458420|CLSTN2;ENST00000511524.1_1_3:139654198-140275504:+|nuORF;CLSTN2|p.S282Afs*73|1|0.41|ENSG00000158258|chr3:140448571-140448571|C/-|frameshift_variant	ENSG00000158258|ENST00000458420|CLSTN2;CLSTN2|p.S282Afs*73|1|0.41|ENSG00000158258|chr3:140448571-140448571|C/-|frameshift_variant	ENSG00000158258|ENST00000458420|CLSTN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.7616882324219	2	481.7633	961.512048	0.40097	0.00019317	-3.4357	-0.0016552	-3.0347	-0.001462	481.76161840358236	18.986	0.4938	18.783	18.559	19.053	-0.20371					25	9	4	0	0	0	0.88411	1	373	373		33.516	0	1	233550			88622	6656;455	61639	61741	98636	98636					0.029752493203773156
VTTFFSGKAQG	11	Unmodified	_VTTFFSGKAQG_					0	0	0		ARFGAP1|p.E299Q|1|0.1|ENSG00000101199|chr20:63286426-63286426|G/C|missense_variant	ARFGAP1|p.E299Q|1|0.1|ENSG00000101199|chr20:63286426-63286426|G/C|missense_variant	ARFGAP1|p.E299Q|1|0.1|ENSG00000101199|chr20:63286426-63286426|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.8139038085938	2	571.795663	1141.57677	-0.00046493	-2.6585E-07	-0.11593	-6.6287E-05	-0.11639	-6.6553E-05	571.7953410655772	41.863	0.92646	41.74	41.527	42.454	-0.12299					55	24	3	0	0	0	0.024747	1	3840	3840		12.812	0	1	973610			88623	114	61640	61742	98637	98637					0.011648241263856107
VTTGKVEVI	9	Unmodified	_VTTGKVEVI_					0	0	0		GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	GGT5|p.E355Rfs*92|1|0.36|ENSG00000099998|chr22:24226242-24226242|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.2849426269531	2	473.2844	944.554247	0.53751	0.0002544	-1.0265	-0.00048584	-0.48901	-0.00023144	473.28385465175853	83.353	0.50449	83.184	82.905	83.409	-0.16915					28	11	3	0	0	0	0.2508	1	10068	10068		82.241	7.9855	1	725660			88624	2113	61641	61743	98638	98638					0.07975224728750163
VTTHIPQTP	9	Unmodified	_VTTHIPQTP_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2717590332031	2	497.271824	992.529095	0.33768	0.00016792	0.26862	0.00013358	0.6063	0.0003015	497.2720213084273	89.52	1.2819	89.498	89.115	90.397	-0.021645					92	30	6	0	0	0	0.70156	1	11267	11267		45.972	3.5761	1	1256900			88625	7442	61642	61744	98639	98639					0.032531699261767244
VTTIGTND	8	Unmodified	_VTTIGTND_					0	0	0			REV__ENSG00000121053|ENST00000225371|EPX	REV__ENSG00000121053|ENST00000225371|EPX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.7347412109375	2	410.705983	819.397412	-0.22671	-9.3113E-05	2.4048	0.00098768	2.1781	0.00089456	410.70666064839776	31.089	0.39762	30.904	30.702	31.099	-0.18503					11	9	2	0	0	0	0.027866	1	2017	2017		44.117	0	1	65223	+		88626	22575	61643	61745	98640	98640					-0.019510601615706946
VTTILGMLAS	10	Unmodified	_VTTILGMLAS_					0	0	0		ENSG00000173530|ENST00000312584|TNFRSF10D	ENSG00000173530|ENST00000312584|TNFRSF10D	ENSG00000173530|ENST00000312584|TNFRSF10D	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.8136901855469	2	503.286085	1004.55762	0.86704	0.00043637	-3.9074	-0.0019665	-3.0403	-0.0015302	503.2841949988994	96.021	0.70296	96.023	95.653	96.356	0.0020752					27	16	2	0	0	0	0.03519	1	12184	12184		20.947	0	1	793150			88627	8379	61644	61746	98641	98641					0.055521515111195185
VTTKFKPS	8	Unmodified	_VTTKFKPS_					0	0	0			REV__ENSG00000072958|ENST00000291439|AP1M1	REV__ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.26605224609375	2	454.26601	906.517468	-0.94752	-0.00043043	0.25512	0.00011589	-0.6924	-0.00031453	454.26590591846275	29.16	0.90261	28.915	28.665	29.567	-0.24524					35	20	3	0	0	0	0.53523	1	1772	1772		82.305	0.064519	1	637210	+		88628	20489	61645	61747	98642	98642					0.06046972902856851
VTTKLVPSI	9	Unmodified	_VTTKLVPSI_					0	0	0		nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.3023376464844	2	479.302593	956.590633	1.611	0.00077216	-1.3488	-0.00064647	0.26223	0.00012569	479.3018010141501	59.46	0.80549	59.46	59.145	59.951	0					48	21	3	0	0	0	0.32811	1	6791	6791		71.877	3.0906	1	2059700			88629	5934	61646	61748	98643	98643					0.11060101625469088
VTTKSQIPL	9	Unmodified	_VTTKSQIPL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.7994689941406	2	493.797675	985.580796	-0.38735	-0.00019127	4.409	0.0021772	4.0217	0.0019859	493.7996883735616	93.425	0.83459	93.433	93.097	93.932	0.0077286					56	19	4	0	0	0	0.72875	1	11809	11809		44.117	5.3107	1	1763700			88630	1655	61647	61749	98644	98644					0.08742913620108084
VTTKVTLPA	9	Unmodified	_VTTKVTLPA_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.758544921875	2	465.286943	928.559333	-0.0093977	-4.3726E-06	0.56615	0.00026342	0.55675	0.00025905	465.287224461279	52.887	1.1228	52.739	52.406	53.529	-0.14723					56	29	3	0	0	0	0.024447	1	5765	5765		25.574	6.4705	1	797490			88631	3196	61648	61750	98645	98645					0.09219528591381732
VTTLVWHL	8	Unmodified	_VTTLVWHL_					0	0	0		ENSG00000110786|ENST00000358540|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5;nc|ENSG00000110786|P54829-2|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	ENSG00000110786|ENST00000358540|PTPN5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.7975158691406	2	484.781828	967.549102	0.13327	6.4606E-05	-3.1269	-0.0015159	-2.9937	-0.0014513	484.7806439849227	58.671	0.79882	58.762	58.448	59.246	0.091217					29	21	2	0	0	0	0.027866	1	6578	6578		57.453	20.424	1	942580			88632	3063	61649	61751	98646	98646					0.06402965656786819
VTTNEFVFY	9	Unmodified	_VTTNEFVFY_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.2882080078125	2	560.27149	1118.52843	0.85134	0.00047698	3.2326	0.0018111	4.0839	0.0022881	560.2732198300615	51.325	0.60926	51.213	50.973	51.583	-0.11163					37	15	3	0	0	0	0.024412	1	5238	5238		24.203	5.8783	1	1836500	+		88633	20382	61650	61752	98647	98647					-0.026096695135038317
VTTPKLLP	8	Unmodified	_VTTPKLLP_					0	0	0			REV__ENST00000502271.5_1_5:53180101-53180530:-|nuORF	REV__ENST00000502271.5_1_5:53180101-53180530:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	434.77984619140625	2	434.778754	867.542954	-0.025772	-1.1205E-05	3.413	0.0014839	3.3872	0.0014727	434.78012510207304	40.646	1.8414	40.669	40.013	41.854	0.023006					178	51	4	0	0	0	1.0338	1	3467	3467		31.955	2.1133	1	8357300	+		88634	33922	61651	61753	98648	98648					0.10388447425293634
VTTPQVVEP	9	Unmodified	_VTTPQVVEP_					0	0	0			REV__ENSG00000182810|ENST00000332395|DDX28	REV__ENSG00000182810|ENST00000332395|DDX28	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2666931152344	2	485.266207	968.517862	0.53662	0.0002604	-0.46858	-0.00022738	0.068045	3.302E-05	485.26586198921336	68.116	1.2034	67.878	67.549	68.753	-0.23814					77	29	5	0	0	0	0.31037	1	7852	7852		74.255	7.8258	1	4004400	+		88635	27511	61652	61754	98649	98649					0.032343478320512986
VTTQILTTI	9	Unmodified	_VTTQILTTI_					0	0	0			REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.7873229980469	2	495.297507	988.580462	-0.13383	-6.6284E-05	-0.65027	-0.00032208	-0.7841	-0.00038836	495.29715552076215	55.603	1.0607	55.447	55.26	56.321	-0.15601					48	28	2	0	0	0	0.024344	1	6098	6098		64.207	12.872	1	445670	+		88636	26476	61653	61755	98650	98650					0.08571493900228688
VTTQILTTI	9	Unmodified	_VTTQILTTI_					0	0	0			REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	REV__SLC23A1|p.I249Nfs*47|1|0.29|ENSG00000170482|chr5:139379978-139379979|-/T|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	495.297507	988.580462	0.81631	0.00040432	-1.6255	-0.00080512	-0.80921	-0.0004008	495.2967292205398	55.506	1.1808	55.506	55.427	56.608	0	0.029599	-0.0006239	NaN	30.318	43	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568070	+		88637	26476	61653	61755							0.08571493900228688
VTTQTLCPT	9	Unmodified	_VTTQTLCPT_					0	0	0		ENST00000416699.5_1_22:42910737-42911168:-|nuORF	ENST00000416699.5_1_22:42910737-42911168:-|nuORF	ENST00000416699.5_1_22:42910737-42911168:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2846374511719	2	482.244418	962.474282	-0.11024	-5.3161E-05	3.1094	0.0014995	2.9992	0.0014463	482.2458084538962	54.947	0.52448	54.796	54.541	55.065	-0.15036					19	14	2	0	0	0	0.024319	1	5991	5991		47.657	0	1	115210			88638	13902	61654	61756	98651	98651					-0.008455849367237533
VTTRHEGGH	9	Unmodified	_VTTRHEGGH_					0	0	0			REV__ENST00000468307.1_1_7:155094489-155094564:+|nuORF	REV__ENST00000468307.1_1_7:155094489-155094564:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2724609375	2	497.246672	992.478791	0.00097076	4.8271E-07	0.29539	0.00014688	0.29637	0.00014737	497.2465056368286	53.155	0.94631	53.155	52.391	53.337	0					27	24	2	0	0	0	0.024205	1	5629	5629		53.351	0	1	132210	+		88639	30688	61655	61757	98652	98652					-0.017749396789440652
VTTSASPGPGQ	11	Unmodified	_VTTSASPGPGQ_					0	0	0			REV__ENSG00000112320|ENST00000317357|SOBP	REV__ENSG00000112320|ENST00000317357|SOBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2511291503906	2	501.248546	1000.48254	0.16682	8.3617E-05	0.009021	4.5217E-06	0.17584	8.8139E-05	501.24847195430425	105.31	0.78471	105.18	104.77	105.56	-0.12444					34	22	2	0	0	0	1.0017	1	13100	13100		36.447	1.2947	1	285490	+		88640	21995	61656	61758	98653	98653					-0.01768314695743811
VTTSQGATLD	10	Unmodified	_VTTSQGATLD_					0	0	0		ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.7763671875	2	496.748379	991.482204	-0.77811	-0.00038653	0.81341	0.00040406	0.035294	1.7532E-05	496.74917705280444	27.963	0.23769	27.794	27.649	27.887	-0.16816					6	5	2	0	0	0	0.03519	1	1570	1570		52.937	19.421	1	60184			88641	9952	61657	61759	98654	98654					-0.013877344155957871
VTTSQSPLY	9	Unmodified	_VTTSQSPLY_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	498.2550048828125	2	498.25584	994.497126	-0.31009	-0.0001545	0.62394	0.00031088	0.31385	0.00015638	498.25603384750275	62.246	0.94921	62.032	61.334	62.283	-0.21375					58	23	5	0	0	0	0.33245	1	6987	6987		71.296	7.9894	1	2303900	+		88642	27515	61658	61760	98655	98655					-0.0003424254762194323
VTTTVKKW	8	Unmodified	_VTTTVKKW_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.26263427734375	2	481.78711	961.559667	-0.73076	-0.00035207	0.69936	0.00033694	-0.031401	-1.5128E-05	481.7873011423926	36.019	0.70453	36.019	35.769	36.474	0					48	19	4	0	0	0	0.027866	1	2790	2790		19.36	0	1	911900	+		88643	21833	61659	61761	98656	98656					0.07734948311224343
VTTTVKKW	8	Unmodified	_VTTTVKKW_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2626037597656	2	481.78711	961.559667	-1.0374	-0.00049981	0.84766	0.00040839	-0.18975	-9.1421E-05	481.787425472571	35.915	0.63989	35.872	35.568	36.208	-0.042454					43	17	3	0	0	0	0.027866	1	2743	2743		25.45	0	1	838920	+		88644	21833	61659	61761	98657	98657					0.07734948311224343
VTTTVKKW	8	Unmodified	_VTTTVKKW_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	481.78711	961.559667	0.023911	1.152E-05	0.29463	0.00014195	0.31854	0.00015347	481.7870695703007	36.308	0.79486	36.103	35.852	36.647	-0.20518	0.091378	-3.5758E-05	NaN	12.959	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444210	+		88645	21833	61659	61761							0.07734948311224343
VTTTVKKW	8	Unmodified	_VTTTVKKW_					0	0	0			REV__ENSG00000110048|ENST00000263847|OSBP	REV__ENSG00000110048|ENST00000263847|OSBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.78711	961.559667	1.4175	0.00068294	-1.4985	-0.00072195	-0.080952	-3.9002E-05	481.7862726428533	36.244	0.80704	36.046	35.809	36.616	-0.19829	0.034429	-0.0017636	NaN	12.959	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471790	+		88646	21833	61659	61761							0.07734948311224343
VTTVFLPAL	9	Unmodified	_VTTVFLPAL_					0	0	0		ENST00000485620.1_1_7:6851426-6854399:-|nuORF	ENST00000485620.1_1_7:6851426-6854399:-|nuORF	ENST00000485620.1_1_7:6851426-6854399:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	480.750244140625	2	480.791861	959.569169	-0.22017	-0.00010586	-3.6613	-0.0017603	-3.8815	-0.0018662	480.78985429763077	32.759	0.44711	32.759	32.494	32.941	0					20	11	2	0	0	0	0.024325	1	2321	2321		31.955	0	1	164120			88647	15329	61660	61762	98658	98658					0.08776716596742062
VTTVIQNPMP	10	Unmodified	_VTTVIQNPMP_					0	0	0		ENST00000600655.1_1_19:35831797-35832055:+|nuORF;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-4|CD22;nc|ENSG00000012124|P20273-3|CD22;ENSG00000012124|ENST00000085219|CD22	ENST00000600655.1_1_19:35831797-35832055:+|nuORF	ENST00000600655.1_1_19:35831797-35832055:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2957153320312	2	550.294442	1098.57433	0.44977	0.00024751	0.055386	3.0479E-05	0.50516	0.00027799	550.2942993602397	96.051	1.3188	96.054	95.653	96.972	0.0020676					84	30	4	0	0	0	0.80817	1	12200	12200		60.118	4.6141	1	2801800			88648	904	61661	61763	98659	98659					0.028986523970843336
VTTVKTKPS	9	Unmodified	_VTTVKTKPS_					0	0	0			REV__nc|ENSG00000114982|Q9P2N6-8|KANSL3	REV__nc|ENSG00000114982|Q9P2N6-8|KANSL3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7492370605469	2	480.78985	959.565146	-0.16051	-7.717E-05	1.2738	0.00061244	1.1133	0.00053527	480.79032339862147	32.484	0.76047	32.547	32.315	33.076	0.062885					28	19	2	0	0	0	0.024205	1	2260	2260		27.882	2.3082	1	179190	+		88649	22157	61662	61764	98660	98660					0.08374627103057719
VTTVVNPKY	9	Unmodified	_VTTVVNPKY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7898254394531	2	510.78985	1019.56515	-0.19234	-9.8244E-05	-0.291	-0.00014864	-0.48334	-0.00024688	510.7895903497962	41.439	1.0793	41.303	40.869	41.948	-0.13553					70	28	4	0	0	0	0.03849	3	3659	3648;3659;3672		134.81	41.615	1	4725000			88650	6130	61663	61765	98661;98662;98663	98662					0.056146271030456774
VTTVVNPKY	9	Unmodified	_VTTVVNPKY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7897033691406	2	510.78985	1019.56515	-0.48447	-0.00024746	-0.050104	-2.5593E-05	-0.53457	-0.00027305	510.7897276518799	41.651	1.0771	41.423	41.044	42.121	-0.2278					76	28	4	0	0	0	0.027092	4	3667	3667;3677;3688;3703		143.89	53.11	1	4527500			88651	6130	61663	61765	98664;98665;98666;98667	98664					0.056146271030456774
VTTVVNPKY	9	Unmodified	_VTTVVNPKY_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7894287109375	2	510.78985	1019.56515	-0.35445	-0.00018105	-0.35067	-0.00017912	-0.70512	-0.00036017	510.7895363710074	41.687	0.95081	41.457	41.08	42.031	-0.23029					78	25	4	0	0	0	0.043667	4	3667	3667;3675;3688;3703		131.03	40.255	1	5283900			88652	6130	61663	61765	98668;98669;98670;98671	98668					0.056146271030456774
VTVATKIN	8	Unmodified	_VTVATKIN_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000529787.2_1_9:100092438-100109914:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	423.2582702636719	2	423.258185	844.501818	-0.76755	-0.00032487	1.0071	0.00042624	0.2395	0.00010137	423.25856366135054	26.965	1.2784	27.047	26.714	27.993	0.081291					78	33	4	0	0	0	0.71063	1	1376	1376		66.429	2.222	1	4236400			88653	10050	61664	61766	98672	98672					0.07334686385786426
VTVDKLYKT	9	Unmodified	_VTVDKLYKT_					0	0	0			REV__ENST00000490729.1_1_12:119175913-119176300:-|nuORF	REV__ENST00000490729.1_1_12:119175913-119176300:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2589721679688	2	533.810782	1065.60701	-0.60323	-0.00032201	-0.20783	-0.00011094	-0.81107	-0.00043296	533.8102857448339	70.003	0.54789	69.736	69.451	69.999	-0.26725					25	12	3	0	0	0	0.024418	1	8103	8103		45.972	0	1	120150	+		88654	33709	61665	61767	98673	98673					0.07683182791561194
VTVEDDHLI	9	Unmodified	_VTVEDDHLI_					0	0	0			REV__ENST00000487304.6_1_15:69745218-69746066:+|nuORF	REV__ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.766357421875	2	520.766571	1039.51859	-0.025376	-1.3215E-05	-0.85303	-0.00044423	-0.8784	-0.00045744	520.7661631309459	47.821	3.1046	47.545	47.194	50.299	-0.27598					242	83	6	0	0	0	0.31247	1	4656	4656		73.975	1.0955	1	68621000	+		88655	23787	61666	61768	98674	98674					0.0004114248110909102
VTVEPRSQP	9	Unmodified	_VTVEPRSQP_					0	0	0		chr14:22450139-22462932|266|10.24|0.1|6.73|+|2|TRDJ1,TRDC|1	chr14:22450139-22462932|266|10.24|0.1|6.73|+|2|TRDJ1,TRDC|1	chr14:22450139-22462932|266|10.24|0.1|6.73|+|2|TRDJ1,TRDC|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.2925720214844	2	506.774731	1011.53491	0.26507	0.00013433	3.7952	0.0019233	4.0602	0.0020576	506.77703330341205	66.158	0.38628	66.158	65.837	66.224	0					13	9	2	0	0	0	0.024323	1	7851	7851		44.117	16.235	1	152680			88656	334	61667	61769	98675	98675					0.02960268437857394
VTVEPRSQP	9	Unmodified	_VTVEPRSQP_					0	0	0		chr14:22450139-22462932|266|10.24|0.1|6.73|+|2|TRDJ1,TRDC|1	chr14:22450139-22462932|266|10.24|0.1|6.73|+|2|TRDJ1,TRDC|1	chr14:22450139-22462932|266|10.24|0.1|6.73|+|2|TRDJ1,TRDC|1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	506.774731	1011.53491	-0.21741	-0.00011018	5.2007	0.0026356	4.9833	0.0025254	506.77739706963644	66.605	0.30289	66.356	66.101	66.404	-0.24839	0.098919	0.00047808	NaN	54.776	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89973			88657	334	61667	61769							0.02960268437857394
VTVHWLPK	8	Unmodified	_VTVHWLPK_					0	0	0		ENST00000590899.5_1_19:16222711-16232755:+|nuORF	ENST00000590899.5_1_19:16222711-16232755:+|nuORF	ENST00000590899.5_1_19:16222711-16232755:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.7301330566406	2	490.28982	978.565087	-1.1717	-0.00057449	-3.7976	-0.0018619	-4.9694	-0.0024364	490.2879438707843	27.24	0.47063	27.322	27.1	27.571	0.081293					16	12	2	0	0	0	0.027866	1	1421	1421		40.573	1.3198	1	98942			88658	17342	61668	61770	98676	98676					0.07494671893687155
VTVKCQGAY	9	Unmodified	_VTVKCQGAY_					0	0	0		FCGR3B|p.L45V|1|0.24|ENSG00000162747|chr1:161629964-161629964|G/C|missense_variant	FCGR3B|p.L45V|1|0.24|ENSG00000162747|chr1:161629964-161629964|G/C|missense_variant	FCGR3B|p.L45V|1|0.24|ENSG00000162747|chr1:161629964-161629964|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.8794860839844	2	484.747127	967.479702	-0.70694	-0.00034269	-2.5429	-0.0012326	-3.2498	-0.0015753	484.7455296557959	43.578	0.69835	43.34	43.099	43.797	-0.23736					51	18	4	0	0	0	0.024405	1	4030	4030		35.618	11.416	1	1547900			88659	17649	61669	61771	98677	98677					-0.005338613542676285
VTVKGFEPL	9	Unmodified	_VTVKGFEPL_					0	0	0		ENSG00000156273|ENST00000286800|BACH1;BACH1-DSCR3|1|fusion	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.2875671386719	2	495.286943	988.559333	-0.44535	-0.00022057	0.77243	0.00038258	0.32709	0.000162	495.28721037586297	67.415	1.0301	67.177	66.838	67.868	-0.23814					66	24	4	0	0	0	0.56934	1	7740	7740		54.776	8.8244	1	5072900			88660	174	61670	61772	98678	98678					0.0645952859136969
VTVLALSY	8	Unmodified	_VTVLALSY_					0	0	0			REV__ENSG00000008710|ENST00000262304|PKD1	REV__ENSG00000008710|ENST00000262304|PKD1	MSMS	OPSCC_40_ClassI_Rep-3	6	433.2554016113281	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.96	1	102.79	102.29	103.29	-0.17034								0	0	0	0.76268	1	12784	12784		37.028	0	1		+		88661	19884	61671	61773	98679	98679					0.05800168154280527
VTVLEEKL	8	Unmodified	_VTVLEEKL_					0	0	0		ENST00000548943.1_1_12:106565027-106566212:+|nuORF;nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	ENST00000548943.1_1_12:106565027-106566212:+|nuORF;nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77886962890625	2	465.778951	929.543348	-0.52618	-0.00024508	-2.5328	-0.0011797	-3.059	-0.0014248	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.845	1	9657	9657		55.504	0.73953	1	1029300			88662	2250;16563	61672	61774	98680	98680					0.07575822354476713
VTVLLNKTV	9	Unmodified	_VTVLLNKTV_					0	0	0		nc|ENSG00000211791|A0A0B4J235|TRAV13-2	nc|ENSG00000211791|A0A0B4J235|TRAV13-2	nc|ENSG00000211791|A0A0B4J235|TRAV13-2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	493.27838134765625	2	493.815867	985.617182	-0.2004	-9.8961E-05	-0.1741	-8.5974E-05	-0.3745	-0.00018494	493.8157074069368	20.784	0.87308	20.616	20.345	21.219	-0.16774					44	17	4	0	0	0	0.024288	1	564	564		36.447	0	1	1589200			88663	18698	61673	61775	98681	98681					0.12379790516797584
VTVMACRSMSR	11	2 Oxidation (M)	_VTVM(Oxidation (M))ACRSM(Oxidation (M))SR_		VTVM(1)ACRSM(1)SR		VTVM(52)ACRSM(52)SR	0	0	2		ENST00000397850.6_1_21:46311895-46313350:-|nuORF	ENST00000397850.6_1_21:46311895-46313350:-|nuORF	ENST00000397850.6_1_21:46311895-46313350:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	636.7954711914062	2	636.7965	1271.57845	-0.54768	-0.00034876	-0.12904	-8.2169E-05	-0.67671	-0.00043093	636.7962306903851	83.854	0.85134	83.643	83.308	84.159	-0.21159					44	19	3	0	0	0	0.90172	1	10120	10120		51.528	7.1506	1	943120			88664	13606	61674	61776	98682	98682		492;493			-0.04647949443165089
VTVMDGVAAN	10	Unmodified	_VTVMDGVAAN_					0	0	0			REV__ENSG00000019485|ENST00000683152|PRDM11;REV__nc|ENSG00000019485|Q9NQV5|PRDM11	REV__ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.25885009765625	2	488.742042	975.469531	-1.0309	-0.00050383	2.3902	0.0011682	1.3593	0.00066436	488.74358243198736	30.448	0.41233	30.522	30.296	30.708	0.074314					13	9	2	0	0	0	0.03519	1	1907	1907		47.657	0	1	36389	+		88665	19987;36439	61675	61777	98683	98683					-0.019184690795100323
VTVMKYFQWAH	11	Unmodified	_VTVMKYFQWAH_					0	0	0		ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000101890|ENST00000218006|GUCY2F	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	470.78814697265625	3	470.572669	1408.69618	-0.057446	-2.7032E-05	1.1176	0.00052591	1.0601	0.00049888	470.90784149962917	23.577	0.25328	23.577	23.441	23.694	0					8	5	2	0	0	0	0.024782	1	954	954		14.086	0	1	27880			88666	2356	61676	61778	98684	98684					0.0081769447942861
VTVQAPPL	8	Unmodified	_VTVQAPPL_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	REV__nc|ENSG00000165271|Q9H6R4-2|NOL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.7463684082031	2	412.747453	823.480354	0.79299	0.0003273	-3.8237	-0.0015782	-3.0307	-0.0012509	412.7457786960996	84.338	1.9792	84.338	83.605	85.584	0					109	46	5	0	0	0	1.0574	1	10596	10596		26.796	0	1	6308600	+		88667	25866	61677	61779	98685	98685					0.06155301357091503
VTVQDINDNP	10	Unmodified	_VTVQDINDNP_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.2589111328125	2	557.772385	1113.53022	0.21562	0.00012027	0.51944	0.00028973	0.73505	0.00040999	558.2734113249417	79.358	0.16714	79.139	79.035	79.202	-0.21923					5	3	2	0	0	0	0.03519	1	9498	9498		19.104	0	1	69688			88668	9828	61678	61780	98686	98686					-0.02200660495577722
VTVQDINDNP	10	Unmodified	_VTVQDINDNP_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.772385	1113.53022	-0.46909	-0.00026164	-4.5323	-0.002528	-5.0014	-0.0027897	557.7700981984354	78.952	0.45602	78.76	78.633	79.089	-0.1921	-0.1348	-0.0027181	NaN	13.454	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171300			88669	9828	61678	61780							-0.02200660495577722
VTVQDINDNP	10	Unmodified	_VTVQDINDNP_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.772385	1113.53022	0.060377	3.3677E-05	-5.2201	-0.0029116	-5.1597	-0.0028779	557.7693861922862	78.766	0.37696	78.785	78.651	79.028	0.018677	-0.10972	-0.0034853	NaN	13.454	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164180			88670	9828	61678	61780							-0.02200660495577722
VTVQHNDILN	10	Unmodified	_VTVQHNDILN_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.2288208007812	2	576.80402	1151.59349	-0.12295	-7.0919E-05	1.7904	0.0010327	1.6674	0.00096178	577.3063874279433	73.67	0.35688	73.393	73.288	73.645	-0.2769					10	8	2	0	0	0	0.03519	1	8652	8652		22.58	0.89391	1	212890	+		88671	26909	61679	61781	98687	98687					0.023753250123490943
VTVQYKTL	8	Unmodified	_VTVQYKTL_					0	0	0			REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	REV__nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	476.2491760253906	2	476.279118	950.543683	1.1166	0.00053181	-1.5943	-0.00075935	-0.47775	-0.00022754	476.2782430968561	51.461	0.52349	51.461	51.178	51.702	0					26	14	2	0	0	0	0.027866	1	5471	5471		21.96	6.3181	1	1419900	+		88672	27773	61680	61782	98688	98688					0.06643242074335376
VTVRKKKG	8	Unmodified	_VTVRKKKG_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.2789611816406	2	458.308544	914.602535	-0.69937	-0.00032053	2.4905	0.0011414	1.7911	0.0008209	458.3105053158088	44.105	0.17734	44.001	43.853	44.03	-0.10468					6	4	2	0	0	0	0.027866	1	4072	4072		18.324	5.3652	1	59505			88673	3375	61681	61783	98689	98689					0.1418176315931987
VTVRSVESI	9	Unmodified	_VTVRSVESI_					0	0	0			REV__nc|ENSG859|P60507|ERVFC1	REV__nc|ENSG859|P60507|ERVFC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.287109375	2	495.284931	988.55531	0.071989	3.5655E-05	3.6872	0.0018262	3.7592	0.0018619	495.28677554173083	67.25	1.6492	67.274	66.855	68.504	0.023903					121	41	6	0	0	0	0.2508	2	7937	7937;7961		82.241	8.4169	1	22084000	+		88674	37255	61682	61784	98690;98691	98690					0.06057439097673978
VTVRTLLSP	9	Unmodified	_VTVRTLLSP_					0	0	0		nc|ENSG00000160856|Q96P31-3|FCRL3	nc|ENSG00000160856|Q96P31-3|FCRL3	nc|ENSG00000160856|Q96P31-3|FCRL3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2903747558594	2	493.305667	984.596781	-0.43476	-0.00021447	0.63276	0.00031214	0.198	9.7673E-05	493.30589510463193	61.52	0.58385	61.306	61.001	61.584	-0.21375					30	13	3	0	0	0	0.024418	1	6906	6906		45.972	15.469	1	927750			88675	18429	61683	61785	98692	98692					0.10386619857001733
VTVSVLVTGE	10	Unmodified	_VTVSVLVTGE_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.81353759765625	2	502.28714	1002.55973	1.1646	0.00058495	2.3967	0.0012038	3.5613	0.0017888	502.28989900174815	96.414	0.21568	96.416	96.314	96.53	0.0020676					6	4	2	0	0	0	0.03519	1	12222	12222		45.972	0	1	26281			88676	7543	61684	61786	98693	98693					0.058549035205942346
VTVTRYSV	8	Unmodified	_VTVTRYSV_					0	0	0			REV__nc|ENSG00000160963|Q96A83-2|COL26A1	REV__nc|ENSG00000160963|Q96A83-2|COL26A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	463.75128173828125	2	462.761092	923.507631	0.03066	1.4188E-05	0.73445	0.00033988	0.76511	0.00035406	462.7611441615528	50.533	0.79796	50.383	49.891	50.689	-0.14916					70	23	5	0	0	0	0.027866	1	5199	5199		31.955	1.6371	1	1137200	+		88677	25365	61685	61787	98694	98694					0.04281784897466423
VTVVVVIII	9	Unmodified	_VTVVVVIII_					0	0	0			REV__LDLRAD4|p.Q67H|1|0.33|ENSG00000168675|chr18:13621136-13621136|A/C|missense_variant	REV__LDLRAD4|p.Q67H|1|0.33|ENSG00000168675|chr18:13621136-13621136|A/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	477.83428955078125	2	477.833529	953.652505	0.39262	0.00018761	0.073048	3.4905E-05	0.46566	0.00022251	477.8334281447745	105.79	1.1708	105.79	105.37	106.54	-0.0013199					118	39	4	0	0	0	1.0365	1	13550	13550		12.959	0	1	1956600	+		88678	26281	61686	61788	98695	98695					0.173824530446268
VTVVVVIII	9	Unmodified	_VTVVVVIII_					0	0	0			REV__LDLRAD4|p.Q67H|1|0.33|ENSG00000168675|chr18:13621136-13621136|A/C|missense_variant	REV__LDLRAD4|p.Q67H|1|0.33|ENSG00000168675|chr18:13621136-13621136|A/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	477.8333740234375	2	477.833529	953.652505	0.19865	9.4921E-05	0.15185	7.2557E-05	0.35049	0.00016748	477.833467546802	105.85	1.2379	105.85	105.54	106.78	0.00014496					116	43	4	0	0	0	1.0051	1	13554	13554		19.36	0	1	2681800	+		88679	26281	61686	61788	98696	98696					0.173824530446268
VTWAGALGLA	10	Unmodified	_VTWAGALGLA_					0	0	0		ENST00000329478.3_1_19:1911901-1912156:+|nuORF	ENST00000329478.3_1_19:1911901-1912156:+|nuORF	ENST00000329478.3_1_19:1911901-1912156:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.7698669433594	2	479.77146	957.528367	0.12672	6.0799E-05	-3.347	-0.0016058	-3.2203	-0.001545	479.7698343581476	19.319	0.73938	19.201	18.707	19.446	-0.11872					33	14	4	0	0	0	0.91051	1	386	386		53.351	5.6941	1	132630			88680	12320	61687	61789	98697	98697					0.04790375277138992
VTWKTKKA	8	Unmodified	_VTWKTKKA_					0	0	0			REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	REV__nc|ENSG00000185880|Q86WT6-4|TRIM69	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	481.7327575683594	2	481.295102	960.575651	-0.31996	-0.00015399	0.38145	0.00018359	0.061492	2.9596E-05	481.29515521320104	56.74	0.99985	56.838	56.359	57.359	0.097893					58	27	4	0	0	0	0.027866	1	6310	6310		47.916	26.969	1	2093800	+		88681	27803	61688	61790	98698	98698					0.09378654548129362
VTWMKRRRRNL	11	Unmodified	_VTWMKRRRRNL_					0	0	0		ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant;ENST00000264447.8_1_2:71650545-71650620:+|nuORF	ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	ZNF638|p.G1305Vfs*22|1|0.2|ENSG00000075292|chr2:71423419-71423419|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.26678466796875	3	505.964894	1514.87285	-0.23534	-0.00011907	-1.9262	-0.00097459	-2.1615	-0.0010937	506.298588770914	52.8	0.24321	52.61	52.51	52.754	-0.18982					8	5	2	0	0	0	0.024888	1	5512	5512		9.6461	3.9474	1	85567			88682	38204	61689	61791	98699	98699					0.13601168153081744
VTWTLFHR	8	Unmodified	_VTWTLFHR_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	530.2894897460938	2	530.290351	1058.56615	-1.2725	-0.0006748	0.93445	0.00049553	-0.33805	-0.00017926	530.2906460483669	25.073	0.97101	25.073	24.474	25.445	0					49	22	3	0	0	0	0.94517	1	1155	1155		45.952	1.8352	1	957600			88683	12678	61690	61792	98700	98700					0.03920886262608292
VTWVKSVTP	9	Unmodified	_VTWVKSVTP_					0	0	0			REV__ENST00000262544.6_1_20:18523788-18526619:+|nuORF	REV__ENST00000262544.6_1_20:18523788-18526619:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	508.8030700683594	2	508.792392	1015.57023	0.49792	0.00025334	1.7757	0.00090349	2.2737	0.0011568	509.29610554278736	37.317	0.36633	37.317	37.12	37.486	0					20	9	3	0	0	0	0.024541	1	3008	3008		15.642	0	1	188230	+		88684	29664	61691	61793	98701	98701					0.06306930965661195
VTWVLNIK	8	Unmodified	_VTWVLNIK_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.K1446Nfs*11|1|0.2|ENSG00000179869|chr7:48273998-48273998|A/-|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	486.3104553222656	2	486.797478	971.580402	-0.40978	-0.00019948	0.78193	0.00038064	0.37215	0.00018116	486.7976772971042	75.023	0.5558	75.023	74.676	75.232	0					19	13	2	0	0	0	0.027866	1	9200	9200		30.504	0	1	81876			88685	8932	61692	61794	98702	98702					0.0934753869087217
VTYEVLSVLEE	11	Unmodified	_VTYEVLSVLEE_					0	0	0		nc|ENSG00000130023|Q5T6L9-3|ERMARD;nc|ENSG00000130023|Q5T6L9-2|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;nc|ENSG00000130023|Q5T6L9-4|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	427.55804443359375	3	427.55886	1279.65475	0.25859	0.00011056	-2.368	-0.0010125	-2.1094	-0.0009019	427.5577628885294	32.575	1.4509	32.339	31.697	33.148	-0.23666					68	34	3	0	0	0	1.0123	1	2257	2257		34.087	3.0184	1	2090000			88686	18264	61693	61795	98703	98703					0.026107922011306073
VTYEVLSVLEE	11	Unmodified	_VTYEVLSVLEE_					0	0	0		nc|ENSG00000130023|Q5T6L9-3|ERMARD;nc|ENSG00000130023|Q5T6L9-2|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;nc|ENSG00000130023|Q5T6L9-4|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	427.55886	1279.65475	0.65136	0.00027849	-2.5771	-0.0011019	-1.9257	-0.00082336	427.55761929639465	32.667	0.87136	32.475	32.073	32.944	-0.19261	0.090223	-0.00027567	NaN	34.087	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1012700			88687	18264	61693	61795							0.026107922011306073
VTYEVLSVLEE	11	Unmodified	_VTYEVLSVLEE_					0	0	0		nc|ENSG00000130023|Q5T6L9-3|ERMARD;nc|ENSG00000130023|Q5T6L9-2|ERMARD;ENSG00000130023|ENST00000366773|ERMARD;nc|ENSG00000130023|Q5T6L9-4|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	nc|ENSG00000130023|Q5T6L9-3|ERMARD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	427.55886	1279.65475	0.083954	3.5895E-05	-1.922	-0.00082178	-1.8381	-0.00078588	427.5577918500081	32.497	0.94828	32.34	31.819	32.767	-0.15772	-0.044627	0.00056456	NaN	34.087	50	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1188200			88688	18264	61693	61795							0.026107922011306073
VTYEYHIGY	9	Unmodified	_VTYEYHIGY_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.2867431640625	2	572.769114	1143.52368	0.63557	0.00036404	2.6766	0.0015331	3.3122	0.0018971	572.7705812326791	71.293	0.57629	71.086	70.921	71.497	-0.20613					17	13	2	0	0	0	0.024412	1	8296	8296		50.025	18.07	1	136280	+		88689	24020	61694	61796	98704	98704					-0.04234553656283424
VTYEYHIGY	9	Unmodified	_VTYEYHIGY_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	572.769114	1143.52368	-0.1019	-5.8363E-05	3.0442	0.0017436	2.9423	0.0016853	572.7705218429409	70.974	0.68264	70.974	70.656	71.339	0	-0.086525	3.3314E-05	NaN	68.485	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1402700	+		88690	24020	61694	61796							-0.04234553656283424
VTYEYHIGY	9	Unmodified	_VTYEYHIGY_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	572.769114	1143.52368	0.82833	0.00047444	2.3536	0.0013481	3.1819	0.0018225	572.770062137803	71.3	0.6321	71.011	70.719	71.351	-0.28858	-0.049722	-0.00075781	NaN	68.485	48	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1354300	+		88691	24020	61694	61796							-0.04234553656283424
VTYEYHIGY	9	Unmodified	_VTYEYHIGY_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	572.769114	1143.52368	-0.52792	-0.00030238	3.6608	0.0020968	3.1329	0.0017944	572.7708642029999	71.027	0.70306	71.037	70.769	71.472	0.010735	-0.023525	0.00073964	NaN	68.485	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1521300	+		88692	24020	61694	61796							-0.04234553656283424
VTYFLKVV	8	Unmodified	_VTYFLKVV_					0	0	0			REV__ENST00000557644.5_1_12:97313802-97313859:+|nuORF	REV__ENST00000557644.5_1_12:97313802-97313859:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2717590332031	2	484.794404	967.574254	-0.4059	-0.00019678	-3.2178	-0.00156	-3.6237	-0.0017568	484.79276663371616	64.329	0.51527	64.066	63.864	64.379	-0.2626					27	13	3	0	0	0	0.027866	1	7515	7515		20.947	0	1	283210	+		88693	35077	61695	61797	98705	98705					0.08917020459375635
VTYFSNII	8	Unmodified	_VTYFSNII_					0	0	0			REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.7605285644531	2	478.758018	955.501483	-0.0057592	-2.7572E-06	1.9755	0.00094579	1.9698	0.00094304	478.7598129096646	33.667	1.8776	33.724	32.647	34.524	0.056572					112	48	5	0	0	0	0.89627	1	2448	2448		51.335	3.4199	1	20332000	+		88694	27628	61696	61798	98706	98706					0.021952666659672104
VTYIGLRTTTY	11	Unmodified	_VTYIGLRTTTY_					0	0	0			REV__nc|ENSG00000108528|Q02978-2|SLC25A11	REV__nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	644.3499145507812	2	644.350803	1286.68705	2.0421	0.0013158	-3.707	-0.0023886	-1.6649	-0.0010728	644.3482775431247	110.37	0.78791	110.37	110.02	110.81	0					74	23	5	0	0	0	1.0344	1	14039	14039		29.17	0	1	637790	+		88695	21744	61697	61799	98707	98707					0.05517624394769882
VTYKKPDV	8	Unmodified	_VTYKKPDV_					0	0	0		ENSG00000064651|ENST00000262461|SLC12A2;nc|ENSG00000064651|P55011-3|SLC12A2;SLC12A2|p.W1049Mfs*5|1|0.2|ENSG00000064651|chr5:128180920-128180921|-/A|frameshift_variant	ENSG00000064651|ENST00000262461|SLC12A2	ENSG00000064651|ENST00000262461|SLC12A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.271240234375	2	475.271293	948.528032	-0.20005	-9.5077E-05	0.37499	0.00017822	0.17494	8.3144E-05	475.2712855888282	79.94	1.0511	79.961	79.561	80.612	0.021439					64	24	4	0	0	0	0.87148	1	9876	9876		53.351	0	1	3567700			88696	1278	61698	61800	98708	98708					0.05170955557287016
VTYKNVPNW	9	Unmodified	_VTYKNVPNW_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	560.79248046875	2	560.792924	1119.57129	-0.48838	-0.00027388	-0.4535	-0.00025432	-0.94188	-0.0005282	560.7929199856609	52.021	1.0645	51.903	51.575	52.64	-0.11876					100	27	5	0	0	0	0.014918	5	5374	5364;5374;5386;5399;5411		162.25	81.798	1	19515000			88697	4594	61699	61801	98709;98710;98711;98712;98713	98710					0.01629145334572968
VTYKNVPNW	9	Unmodified	_VTYKNVPNW_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	560.7925415039062	2	560.792924	1119.57129	-1.4639	-0.00082097	0.46957	0.00026333	-0.99438	-0.00055764	560.7935030197795	52.332	1.2646	52.063	51.725	52.99	-0.26903					107	32	5	0	0	0	0.014918	7	5403	5395;5403;5415;5428;5440;5454;5466		162.25	87.997	1	19426000			88698	4594	61699	61801	98714;98715;98716;98717;98718;98719;98720	98715					0.01629145334572968
VTYKNVPNW	9	Unmodified	_VTYKNVPNW_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	560.7915649414062	2	560.792924	1119.57129	-0.1314	-7.3689E-05	-0.82248	-0.00046124	-0.95389	-0.00053493	560.7926925960869	52.106	1.575	51.922	51.449	53.024	-0.18404					119	40	5	0	0	0	0.027092	6	5369	5369;5379;5391;5405;5417;5435		143.89	64.89	1	19704000			88699	4594	61699	61801	98721;98722;98723;98724;98725;98726	98721					0.01629145334572968
VTYKSKYMLL	10	Unmodified	_VTYKSKYMLL_					0	0	0		ENST00000463004.5_1_20:34328585-34328648:-|nuORF	ENST00000463004.5_1_20:34328585-34328648:-|nuORF	ENST00000463004.5_1_20:34328585-34328648:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.7220458984375	3	415.901904	1244.68388	0.13358	5.5554E-05	3.2456	0.0013498	3.3791	0.0014054	415.90349122015795	42.559	0.56964	42.585	42.221	42.79	0.026012					19	15	2	0	0	0	0.03519	1	3858	3858		14.694	0	1	116590			88700	14725	61700	61802	98727	98727					0.07132658016416826
VTYLKEDIP	9	Unmodified	_VTYLKEDIP_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.304931640625	2	539.294965	1076.57538	-0.49384	-0.00026632	0.50979	0.00027493	0.015956	8.6052E-06	539.2948414203281	90.015	1.7379	90.029	89.297	91.035	0.013443					72	41	4	0	0	0	0.024021	1	11192	11192		68.787	15.435	1	602550	+		88701	28271	61701	61803	98728	98728					0.040151900376031335
VTYLKEDIP	9	Unmodified	_VTYLKEDIP_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	539.294965	1076.57538	-1.1906	-0.00064211	1.5441	0.00083274	0.35348	0.00019063	539.2956113745427	89.999	1.1142	89.999	89.731	90.845	0	0.052134	0.00041702	NaN	68.787	55	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633810	+		88702	28271	61701	61803							0.040151900376031335
VTYLKEDIP	9	Unmodified	_VTYLKEDIP_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	539.294965	1076.57538	-1.202	-0.00064824	1.7127	0.00092365	0.51067	0.0002754	539.2954726056726	90.048	0.65456	89.887	89.603	90.258	-0.16096	-0.059523	0.00059883	NaN	68.787	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123070	+		88703	28271	61701	61803							0.040151900376031335
VTYLKEDIP	9	Unmodified	_VTYLKEDIP_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.294965	1076.57538	-0.82085	-0.00044268	1.293	0.00069729	0.47212	0.00025461	539.2954420041804	89.969	0.53491	89.842	89.631	90.166	-0.12671	-0.1043	0.00014612	NaN	68.787	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151040	+		88704	28271	61701	61803							0.040151900376031335
VTYLKEDIP	9	Unmodified	_VTYLKEDIP_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	539.294965	1076.57538	-0.6118	-0.00032994	1.0874	0.00058641	0.47555	0.00025646	539.2951397740401	90.049	0.74587	89.911	89.662	90.408	-0.13824	-0.03578	-7.5649E-05	NaN	68.787	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122890	+		88705	28271	61701	61803							0.040151900376031335
VTYNTGKEF	9	Unmodified	_VTYNTGKEF_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.759033203125	2	529.761289	1057.50803	0.2419	0.00012815	-3.3403	-0.0017695	-3.0984	-0.0016414	529.7592305043199	85.664	1.3156	85.664	85.289	86.605	0					54	30	3	0	0	0	0.53979	1	10752	10752		56.721	3.7844	1	892330	+		88706	20901	61702	61804	98729	98729					-0.01842840173321747
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.2780151367188	2	578.277106	1154.53966	-0.61537	-0.00035585	0.47439	0.00027433	-0.14098	-8.1526E-05	578.2775408874098	52.446	0.62906	52.327	52.011	52.64	-0.11875					45	15	4	0	0	0	0.014013	2	5443	5443;5455		166.78	81.867	1	1186400			88707	3233	61703	61805	98730;98731	98730					-0.03142847419394457
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.2772827148438	2	578.277106	1154.53966	-0.68986	-0.00039893	0.55821	0.0003228	-0.13164	-7.6127E-05	578.2774267279584	52.676	0.54797	52.417	52.135	52.683	-0.25838					39	13	4	0	0	0	0.014013	2	5472	5472;5484		166.78	73.36	1	1405200			88708	3233	61703	61805	98732;98733	98732					-0.03142847419394457
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	578.2784423828125	2	578.277106	1154.53966	-0.50019	-0.00028925	0.72518	0.00041935	0.22499	0.00013011	578.2775794946485	52.505	0.7198	52.315	51.993	52.712	-0.18982					38	17	3	0	0	0	0.016871	2	5448	5448;5458		152.47	83.684	1	1026200			88709	3233	61703	61805	98734;98735	98734					-0.03142847419394457
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.277106	1154.53966	-1.2771	-0.00073852	1.2099	0.00069963	-0.067249	-3.8889E-05	578.2777183031415	52.372	0.69855	52.372	52.012	52.711	0	0.013375	0.0009778	NaN	166.78	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	822810			88710	3233	61703	61805							-0.03142847419394457
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	578.277106	1154.53966	-0.010525	-6.0861E-06	-0.069884	-4.0413E-05	-0.080409	-4.6499E-05	578.2769259825701	52.48	0.73738	52.333	52.021	52.758	-0.14723	-0.025406	-0.00050228	NaN	166.78	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	756350			88711	3233	61703	61805							-0.03142847419394457
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	578.277106	1154.53966	-0.4918	-0.0002844	-0.10164	-5.8778E-05	-0.59344	-0.00034317	578.2769541877095	52.293	0.70876	52.385	52.04	52.749	0.091938	0.02687	-0.00053902	NaN	166.78	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673610			88712	3233	61703	61805							-0.03142847419394457
VTYPLFTIT	9	Unmodified	_VTYPLFTIT_					0	0	0			REV__ENST00000502513.1_1_4:944259-945532:+|nuORF	REV__ENST00000502513.1_1_4:944259-945532:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2736206054688	2	527.794601	1053.57465	-0.12026	-6.3475E-05	-3.4056	-0.0017974	-3.5258	-0.0018609	527.7924364631409	58.642	0.76237	58.642	58.457	59.22	0					38	20	3	0	0	0	0.024506	1	6658	6658		23.042	5.6775	1	449190	+		88713	33932	61704	61806	98736	98736					0.05000395388583456
VTYTVGHGTDV	11	Unmodified	_VTYTVGHGTDV_					0	0	0			REV__ENSG00000181786|ENST00000324436|ACTL9	REV__ENSG00000181786|ENST00000324436|ACTL9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.7852783203125	2	574.782753	1147.55095	-0.24961	-0.00014347	3.3434	0.0019218	3.0938	0.0017783	574.7846923137164	52.602	1.2122	52.475	51.93	53.143	-0.12705					105	30	5	0	0	0	0.95882	1	5496	5496		45.972	1.5951	1	3201900	+		88714	27425	61705	61807	98737	98737					-0.016920701159051532
VTYVGTKQL	9	Unmodified	_VTYVGTKQL_					0	0	0		ENSG00000130204|ENST00000426677|TOMM40;nc|ENSG00000130204|O96008-2|TOMM40	ENSG00000130204|ENST00000426677|TOMM40	ENSG00000130204|ENST00000426677|TOMM40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.78955078125	2	504.78985	1007.56515	-0.055979	-2.8258E-05	-0.92757	-0.00046823	-0.98355	-0.00049649	504.7893225017125	42.188	1.1555	42.065	41.527	42.683	-0.12299					44	30	2	0	0	0	0.077175	1	3788	3788		118.74	41.969	1	1344800			88715	4396	61706	61808	98738	98738					0.06166627103038991
VTYVGTKQL	9	Unmodified	_VTYVGTKQL_					0	0	0		ENSG00000130204|ENST00000426677|TOMM40;nc|ENSG00000130204|O96008-2|TOMM40	ENSG00000130204|ENST00000426677|TOMM40	ENSG00000130204|ENST00000426677|TOMM40	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	504.7901306152344	2	504.78985	1007.56515	-0.51185	-0.00025838	-0.5772	-0.00029136	-1.0891	-0.00054974	504.78957516112513	42.418	0.6896	42.188	41.865	42.555	-0.2303					41	18	4	0	0	0	0.094442	1	3811	3811		112.41	45.982	1	1346700			88716	4396	61706	61808	98739	98739					0.06166627103038991
VTYVKPYFD	9	Unmodified	_VTYVKPYFD_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45329665-45330565:-|nuORF	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.7705688476562	2	566.289682	1130.56481	-0.85749	-0.00048559	-2.5952	-0.0014696	-3.4527	-0.0019552	566.2880889087992	44.263	0.8466	44.158	43.661	44.508	-0.10468					45	22	4	0	0	0	0.023635	1	4163	4163		66.429	34.795	1	1035200			88717	5951	61707	61809	98740	98740					0.004752073831923553
VTYVKPYFD	9	Unmodified	_VTYVKPYFD_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11;ENST00000553480.1_1_14:45329665-45330565:-|nuORF	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.771484375	2	566.289682	1130.56481	-0.81458	-0.00046129	-2.7996	-0.0015854	-3.6142	-0.0020467	566.2880094397623	44.438	0.76461	44.194	43.711	44.476	-0.2444					40	20	3	0	0	0	0.024261	1	4179	4179		64.207	0	1	775180			88718	5951	61707	61809	98741	98741					0.004752073831923553
VTYVPVTTF	9	Unmodified	_VTYVPVTTF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.7802124023438	2	513.778951	1025.54335	-0.34187	-0.00017565	0.073477	3.7751E-05	-0.26839	-0.00013789	513.778893982367	75.637	1.1979	75.365	74.766	75.964	-0.27267					72	29	4	0	0	0	0.23085	3	8956	8932;8943;8956		84.916	31.564	1	2419800			88719	1446	61708	61810	98742;98743;98744	98744					0.031598223544506254
VTYVPVTTF	9	Unmodified	_VTYVPVTTF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.777099609375	2	513.778951	1025.54335	-0.29288	-0.00015047	-0.043627	-2.2415E-05	-0.33651	-0.00017289	513.7788358577621	75.593	1.0231	75.334	75.033	76.056	-0.25866					69	25	4	0	0	0	0.42604	2	8947	8947;8965		64.207	5.0644	1	3492100			88720	1446	61708	61810	98745;98746	98745					0.031598223544506254
VTYVPVTTF	9	Unmodified	_VTYVPVTTF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.7783203125	2	513.778951	1025.54335	0.16655	8.5572E-05	-0.59384	-0.0003051	-0.42729	-0.00021953	513.7785704151158	75.503	1.1453	75.328	74.943	76.088	-0.17548					82	28	5	0	0	0	0.15029	2	8925	8925;8938		99.375	33.572	1	4177100			88721	1446	61708	61810	98747;98748	98747					0.031598223544506254
VVAARAKV	8	Unmodified	_VVAARAKV_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	407.26873779296875	2	407.268887	812.523222	0.057894	2.3578E-05	-0.097204	-3.9588E-05	-0.03931	-1.601E-05	407.2687141253789	28.678	0.81672	28.678	28.406	29.223	0					50	19	4	0	0	0	0.75307	1	1693	1693		62.978	10.679	1	1627100	+		88722	22899	61709	61811	98749	98749					0.10946116205172984
VVAARAKV	8	Unmodified	_VVAARAKV_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	407.2685852050781	2	407.268887	812.523222	0.0042335	1.7242E-06	-0.079163	-3.224E-05	-0.074929	-3.0516E-05	407.2687052492347	28.679	0.79223	28.674	28.33	29.122	-0.0042					42	18	3	0	0	0	0.48546	2	1684	1673;1684		86.935	21.037	1	1265500	+		88723	22899	61709	61811	98750;98751	98751					0.10946116205172984
VVAARAKV	8	Unmodified	_VVAARAKV_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	407.26861572265625	2	407.268887	812.523222	1.36	0.00055389	-1.3948	-0.00056806	-0.034803	-1.4174E-05	407.26818164475617	28.433	0.65846	28.514	28.248	28.907	0.080812					39	15	3	0	0	0	0.61897	1	1614	1614		74.517	11.538	1	1819500	+		88724	22899	61709	61811	98752	98752					0.10946116205172984
VVAARAKV	8	Unmodified	_VVAARAKV_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	407.268887	812.523222	0.0042335	1.7242E-06	-0.079163	-3.224E-05	-0.074929	-3.0516E-05	407.2687052492347	28.679	0.79223	28.674	28.33	29.122	-0.0042	0.05219	0.00032803	NaN	86.935	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1265500	+		88725	22899	61709	61811							0.10946116205172984
VVAASVWLL	9	Unmodified	_VVAASVWLL_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.28729248046875	2	479.292028	956.569503	-0.23841	-0.00011427	0.057276	2.7452E-05	-0.18113	-8.6815E-05	479.2919076798192	66.456	0.37936	66.211	65.972	66.351	-0.24517					14	9	2	0	0	0	0.024497	1	7579	7579		28.254	6.2944	1	108460			88726	3694	61710	61812	98753	98753					0.08948136316621458
VVAASVWLL	9	Unmodified	_VVAASVWLL_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	479.292028	956.569503	0.16474	7.8958E-05	-0.018498	-8.866E-06	0.14624	7.0092E-05	479.29183620166816	66.443	0.31043	66.194	66.021	66.331	-0.24839	-0.013867	-0.00010099	NaN	13.775	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98755			88727	3694	61710	61812							0.08948136316621458
VVAASVWLL	9	Unmodified	_VVAASVWLL_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	479.292028	956.569503	-0.66026	-0.00031646	0.28516	0.00013667	-0.3751	-0.00017978	479.29201136365754	66.443	0.38202	66.219	65.986	66.368	-0.22374	0.010871	0.00019008	NaN	13.775	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91308			88728	3694	61710	61812							0.08948136316621458
VVAAVWRHLL	10	Unmodified	_VVAAVWRHLL_					0	0	0		ENSG00000198326|ENST00000380585|TMEM239;nc|ENSG00000198326|Q8WW34|TMEM239	ENSG00000198326|ENST00000380585|TMEM239	ENSG00000198326|ENST00000380585|TMEM239	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.352783203125	2	582.356025	1162.6975	-0.28496	-0.00016595	-4.2589	-0.0024802	-4.5439	-0.0026462	582.3534070628981	102.44	0.86188	102.26	101.97	102.84	-0.17178					81	20	6	0	0	0	1.1237	1	12770	12770		23.042	1.0826	1	8672600			88729	10122	61711	61813	98754	98754					0.12265696630493039
VVACLKIR	8	Unmodified	_VVACLKIR_					0	0	0			REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF	REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.2424011230469	2	451.286223	900.557893	-0.52067	-0.00023497	-3.2494	-0.0014664	-3.77	-0.0017014	451.2845876050699	53.629	0.68902	53.493	53.208	53.897	-0.13617					54	20	4	0	0	0	0.027866	1	5646	5646		37.028	0	1	3671800	+		88730	29606	61712	61814	98755	98755					0.10363616021618327
VVAEFVPLI	9	Unmodified	_VVAEFVPLI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7996520996094	2	493.799686	985.584819	-0.41364	-0.00020426	0.47263	0.00023338	0.058985	2.9127E-05	493.79976739787924	93.45	0.78854	93.445	93.159	93.947	-0.0042038					54	18	4	0	0	0	0.36105	2	11837	11837;11850		68.485	3.1879	1	1484900			88731	9860	61713	61815	98756;98757	98756					0.09145003113803796
VVAEFVPLI	9	Unmodified	_VVAEFVPLI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	493.799560546875	2	493.799686	985.584819	-0.38735	-0.00019127	0.33577	0.00016581	-0.051575	-2.5467E-05	493.7996883735616	93.425	0.83459	93.433	93.097	93.932	0.0077286					56	19	4	0	0	0	0.062871	1	11797	11797		123.99	44.05	1	1763700			88732	9860	61713	61815	98758	98758					0.09145003113803796
VVAEFVPLI	9	Unmodified	_VVAEFVPLI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	493.799686	985.584819	0.31895	0.0001575	-0.17771	-8.7752E-05	0.14124	6.9745E-05	493.7994504293199	93.476	0.75032	93.476	93.177	93.927	0	0.14241	-0.00044611	NaN	123.99	53	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1496800			88733	9860	61713	61815							0.09145003113803796
VVAEFVPLI	9	Unmodified	_VVAEFVPLI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	493.799686	985.584819	-1.6557	-0.0008176	2.5218	0.0012453	0.86609	0.00042767	493.8006017775725	93.359	0.56811	93.219	92.916	93.484	-0.13995	-0.11401	0.00222	NaN	123.99	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141220			88734	9860	61713	61815							0.09145003113803796
VVAEFVPLI	9	Unmodified	_VVAEFVPLI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	493.799686	985.584819	0.17168	8.4774E-05	0.16859	8.3251E-05	0.34027	0.00016802	493.7995815442788	93.283	0.65582	93.161	92.927	93.583	-0.12215	-0.17299	-0.0001041	NaN	123.99	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142380			88735	9860	61713	61815							0.09145003113803796
VVAEFVPLI	9	Unmodified	_VVAEFVPLI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	493.799686	985.584819	0.025847	1.2763E-05	0.23736	0.00011721	0.2632	0.00012997	493.79945761173695	93.411	0.78225	93.267	92.7	93.483	-0.1441	-0.066859	-3.6191E-05	NaN	123.99	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227740			88736	9860	61713	61815							0.09145003113803796
VVAENIPVIPL	11	Unmodified	_VVAENIPVIPL_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.352783203125	2	582.355357	1162.69616	-0.68918	-0.00040135	-2.6596	-0.0015488	-3.3488	-0.0019502	582.3536897697854	102.35	1.693	102.23	101.92	103.61	-0.12666					100	40	6	0	0	0	1.0592	1	12701	12701		22.58	1.6327	1	7549000			88737	3389	61714	61816	98759	98759					0.12132017751082458
VVAFQNVF	8	Unmodified	_VVAFQNVF_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ENST00000472971.1_1_1:35476328-35477547:-|nuORF	ENSG00000163867|ENST00000357182|ZMYM6;ENST00000472971.1_1_1:35476328-35477547:-|nuORF	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	461.26434326171875	2	462.252903	922.491253	-0.60068	-0.00027767	0.27411	0.00012671	-0.32657	-0.00015096	462.2531487964184	92.224	0.59421	92.224	91.86	92.454	0					26	14	2	0	0	0	0.027866	1	11688	11688		14.664	10.348	1	290160			88738	7160;14999	61715	61817	98760	98760					0.026907037313776527
VVAGIQSSKP	10	Unmodified	_VVAGIQSSKP_					0	0	0			REV__nc|ENSG00000108439|Q9NVS9-3|PNPO	REV__nc|ENSG00000108439|Q9NVS9-3|PNPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	492.29803466796875	2	493.287474	984.560395	-0.71174	-0.00035109	0.10053	4.9588E-05	-0.61122	-0.0003015	493.2875148193396	60.633	0.25006	60.427	60.254	60.504	-0.20599					7	5	2	0	0	0	0.03519	1	6746	6746		35.618	11.099	1	59465	+		88739	21736	61716	61818	98761	98761					0.06749742960289495
VVAGLGSKPL	10	Unmodified	_VVAGLGSKPL_					0	0	0		nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.78387451171875	2	470.794935	939.575317	0.21383	0.00010067	0.80823	0.00038051	1.0221	0.00048118	470.79435069676464	46.62	0.56469	46.524	46.295	46.86	-0.096649					26	15	2	0	0	0	0.03519	1	4523	4523		63.306	0	1	437420			88740	3237	61717	61819	98762	98762					0.10311234828293436
VVAGLYPKP	9	Unmodified	_VVAGLYPKP_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MSMS	OPSCC_40_ClassI_Rep-1	4	472.283447265625	2	472.284203	942.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.43	1	100.29	99.793	100.79	-0.13364								0	0	0	0.6631	1	12455	12455		28.254	0	1				88741	5952	61718	61820	98763	98763					0.08027849799555042
VVAIFGELAK	10	Unmodified	_VVAIFGELAK_					0	0	0			REV__ENSG00000116016|ENST00000263734|EPAS1	REV__ENSG00000116016|ENST00000263734|EPAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	524.3098754882812	2	523.815867	1045.61718	0.6354	0.00033283	-0.0011702	-6.1299E-07	0.63423	0.00033222	523.8154746440823	74.414	1.1	74.232	74.005	75.105	-0.18279					46	25	3	0	0	0	0.03519	1	8853	8853		26.693	4.1133	1	1567600	+		88742	22252	61719	61821	98764	98764					0.0961979051680828
VVALDKVPE	9	Unmodified	_VVALDKVPE_					0	0	0		ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	485.2830505371094	2	485.2844	968.554247	-0.82589	-0.00040079	-2.5823	-0.0012531	-3.4081	-0.0016539	485.28324341775743	21.56	1.7451	21.56	21.195	22.94	0					108	36	6	0	0	0	0.70186	1	683	683		45.952	7.1458	1	9057800			88743	10525	61720	61822	98765	98765					0.06871224728763536
VVALGLTVSV	10	Unmodified	_VVALGLTVSV_					0	0	0		ENSG00000064547|ENST00000407877|LPAR2;LPAR2|p.R231Afs*36|1|0.34|ENSG00000064547|chr19:19626594-19626594|G/-|frameshift_variant	ENSG00000064547|ENST00000407877|LPAR2	ENSG00000064547|ENST00000407877|LPAR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	480.28729248046875	2	479.302593	956.590633	-0.23141	-0.00011091	-0.27156	-0.00013016	-0.50297	-0.00024107	479.30213330005563	66.328	0.38885	66.083	65.851	66.24	-0.24517					12	9	2	0	0	0	0.03519	1	7579	7579		23.042	1.0826	1	94675			88744	1275	61721	61823	98766	98766					0.11060101625469088
VVALVAMLGG	10	Unmodified	_VVALVAMLGG_					0	0	0			REV__ENST00000430598.5_1_15:20613931-20667676:-|nuORF	REV__ENST00000430598.5_1_15:20613931-20667676:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.27996826171875	2	465.278063	928.541574	0.28089	0.00013069	4.0449	0.001882	4.3258	0.0020127	465.27981139819894	88.02	1.2618	87.888	87.477	88.739	-0.13254					76	30	4	0	0	0	1.1309	1	10752	10752		26.796	0	1	1552700	+		88745	32357	61722	61824	98767	98767					0.07444490064881393
VVALYGTLSDL	11	Unmodified	_VVALYGTLSDL_					0	0	0		KCTD9|p.V20L|1|0.14|ENSG00000104756|chr8:25446241-25446241|C/A|missense_variant	KCTD9|p.V20L|1|0.14|ENSG00000104756|chr8:25446241-25446241|C/A|missense_variant	KCTD9|p.V20L|1|0.14|ENSG00000104756|chr8:25446241-25446241|C/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.823486328125	2	575.821347	1149.62814	-0.63771	-0.00036721	4.3821	0.0025233	3.7444	0.0021561	575.8236828291937	44.859	1.2375	44.896	44.612	45.85	0.036903					77	35	3	0	0	0	0.98218	1	4274	4274		40.778	9.2484	1	2234500			88746	17790	61723	61825	98768	98768					0.05931148100444261
VVAMDRHYF	9	Unmodified	_VVAMDRHYF_					0	0	0		ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	ENSG00000131386|ENST00000339732|GALNT15	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2862548828125	2	569.279126	1136.5437	0.37203	0.00021179	-3.1478	-0.001792	-2.7757	-0.0015802	569.276878910351	82.639	1.2865	82.458	82.07	83.357	-0.18079					77	29	3	0	0	0	0.70186	1	10044	10044		45.952	3.5558	1	770170			88747	4518	61724	61826	98769	98769					-0.019110811973177988
VVANKIDDI	9	Unmodified	_VVANKIDDI_					0	0	0		nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	nc|ENSG00000144134|Q9UNT1|RABL2B	nc|ENSG00000144134|Q9UNT1|RABL2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	493.7793273925781	2	493.779482	985.544411	-0.27197	-0.00013429	0.3197	0.00015786	0.04773	2.3568E-05	493.77948364464703	24.072	0.90846	23.857	23.554	24.463	-0.21511					30	20	2	0	0	0	0.4752	1	1016	1016		60.972	0.85368	1	787120			88748	18352	61725	61827	98770	98770					0.05106036723384477
VVARCLVSL	9	Unmodified	_VVARCLVSL_					0	0	0			REV__ENST00000376499.7_2_9:84198660-84198882:-|nuORF	REV__ENST00000376499.7_2_9:84198660-84198882:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	480.28900146484375	2	480.288963	958.563372	1.125	0.00054034	-3.6745	-0.0017648	-2.5494	-0.0012245	480.287458687791	65.777	0.72943	65.777	65.494	66.224	0					61	18	4	0	0	0	0.29158	1	7831	7831		76.774	2.7994	1	6733900	+		88749	31353	61726	61828	98771	98771					0.08243294813439661
VVARDGVLL	9	Unmodified	_VVARDGVLL_					0	0	0		ENST00000458686.5_1_2:70283008-70310715:-|nuORF	ENST00000458686.5_1_2:70283008-70310715:-|nuORF	ENST00000458686.5_1_2:70283008-70310715:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.2926330566406	2	471.292559	940.570566	-0.11834	-5.5771E-05	0.038407	1.8101E-05	-0.07993	-3.7671E-05	471.29258327038116	50.194	1.2249	50.194	49.805	51.03	0					106	35	4	0	0	0	0.27161	1	5264	5264		79.451	8.1553	1	24213000			88750	14629	61727	61829	98772	98772					0.09790350685523208
VVARTPPEP	9	Unmodified	_VVARTPPEP_					0	0	0		nc|ENSG00000116871|Q3KQU3-2|MAP7D1;nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;ENST00000527764.1_1_1:36622018-36637187:+|nuORF	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-2|MAP7D1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.2742004394531	2	483.274367	964.53418	-1.073	-0.00051857	0.40022	0.00019341	-0.67282	-0.00032516	483.27460517941046	30.404	1.2801	30.404	29.977	31.257	0					90	30	5	0	0	0	0.53979	1	1961	1961		56.721	1.2168	1	9871600			88751	3587	61728	61830	98773	98773					0.05049473788812975
VVARTVAQLW	10	Unmodified	_VVARTVAQLW_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000554699.1_1_14:20919446-20922842:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.8375854492188	2	571.837665	1141.66078	-0.070976	-4.0587E-05	-0.53366	-0.00030517	-0.60463	-0.00034575	571.837196206619	62.046	0.99281	61.833	61.252	62.244	-0.21375					61	24	4	0	0	0	0.47249	1	6968	6968		91.265	28.287	1	2669800			88752	1979	61729	61831	98774	98774					0.09561400013944876
VVARTVAQLW	10	Unmodified	_VVARTVAQLW_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000554699.1_1_14:20919446-20922842:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.837646484375	2	571.837665	1141.66078	-0.78415	-0.00044841	0.038688	2.2124E-05	-0.74546	-0.00042628	571.8375435281343	61.96	0.8502	61.782	61.453	62.304	-0.17781					62	21	4	0	0	0	0.40114	1	6954	6954		98.582	24.327	1	2667800			88753	1979	61729	61831	98775	98775					0.09561400013944876
VVARTVAQLW	10	Unmodified	_VVARTVAQLW_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000554699.1_1_14:20919446-20922842:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.8377685546875	2	571.837665	1141.66078	-0.1589	-9.0863E-05	-0.39636	-0.00022665	-0.55525	-0.00031751	571.837257969384	62.109	0.73998	61.851	61.588	62.328	-0.25725					58	18	4	0	0	0	0.54106	2	6957	6957;6968		83.647	22.743	1	2551700			88754	1979	61729	61831	98776;98777	98776					0.09561400013944876
VVARWLSL	8	Unmodified	_VVARWLSL_					0	0	0		ENST00000467617.1_1_22:41363658-41368489:+|nuORF	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	ENST00000467617.1_1_22:41363658-41368489:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	472.28778076171875	2	472.28982	942.565087	0.91129	0.00043039	-2.7348	-0.0012916	-1.8236	-0.00086125	472.2895564961232	99.025	0.6666	99.021	98.767	99.434	-0.0038834					24	14	2	0	0	0	1.0574	1	12581	12581		25.45	1.2474	1	63594			88755	14846	61730	61832	98778	98778					0.09150671893701201
VVASELTK	8	Unmodified	_VVASELTK_					0	0	0			REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	REV__PRUNE2|p.I2894Sfs*17|1|0.15|ENSG00000106772|chr9:76644768-76644786|TCGATGACCTTCATGTCAA/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	423.25823974609375	2	423.750193	845.485833	-0.51408	-0.00021784	3.1332	0.0013277	2.6192	0.0011099	423.7513022378421	27.097	1.7492	27.084	25.787	27.536	-0.012983					74	43	4	0	0	0	0.027866	1	1438	1438		10.866	0.6003	1	1177300	+		88756	21642	61731	61833	98779	98779					0.05690980148892777
VVASERLLV	9	Unmodified	_VVASERLLV_					0	0	0		ENST00000548915.1_1_12:52463811-52464170:+|nuORF	ENST00000548915.1_1_12:52463811-52464170:+|nuORF	ENST00000548915.1_1_12:52463811-52464170:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	493.30560302734375	2	493.305667	984.596781	1.0832	0.00053433	-1.5571	-0.00076813	-0.47394	-0.0002338	493.3048559255982	59.163	0.92426	59.163	58.787	59.711	0					76	24	4	0	0	0	0.50848	1	6752	6752		58.782	5.4305	1	8577700			88757	16562	61732	61834	98780	98780					0.10386619857013102
VVASSEDPDL	10	Unmodified	_VVASSEDPDL_					0	0	0			REV__chr22:19045362-19048440|147|10.55|0.37|4.85|-|2|None,DGCR2|1	REV__chr22:19045362-19048440|147|10.55|0.37|4.85|-|2|None,DGCR2|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2786865234375	2	516.248212	1030.48187	-0.75972	-0.0003922	2.4751	0.0012778	1.7154	0.00088557	516.2488023642089	46.811	0.37469	46.862	46.649	47.024	0.051399					19	9	3	0	0	0	0.03519	1	4568	4568		35.618	0	1	149330	+		88758	19425	61733	61835	98781	98781					-0.0321515413547786
VVATALAVEP	10	Unmodified	_VVATALAVEP_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-3|DIP2A;ENST00000480553.1_1_21:47959692-47966956:+|nuORF	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.2829895019531	2	485.2844	968.554247	-0.47049	-0.00022832	-2.9719	-0.0014422	-3.4424	-0.0016705	485.28305550469815	21.616	1.7483	21.526	21.158	22.906	-0.090094					100	36	5	0	0	0	0.91051	1	667	667		53.351	0	1	9118900			88759	6804	61734	61836	98782	98782					0.06871224728763536
VVAVVDLD	8	Unmodified	_VVAVVDLD_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	414.2408142089844	2	415.236919	828.459284	-0.19933	-8.2769E-05	0.0076174	3.163E-06	-0.19171	-7.9606E-05	415.23654350018586	30.974	0.37949	31.045	30.747	31.126	0.071222					11	8	2	0	0	0	0.027866	1	1946	1946		9.4706	0	1	29343	+		88760	25253	61735	61837	98783	98783					0.03819291257570967
VVAWPAAGSR	10	Unmodified	_VVAWPAAGSR_					0	0	0		ENST00000330292.4_17:80207889-80208285:+|nuORF	ENST00000330292.4_17:80207889-80208285:+|nuORF	ENST00000330292.4_17:80207889-80208285:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	506.7716369628906	2	507.279983	1012.54541	-1.1676	-0.00059232	0.85098	0.00043169	-0.31666	-0.00016063	507.28050606071776	20.973	0.54018	20.973	20.704	21.244	0					17	10	2	0	0	0	0.03519	1	597	597		16.473	3.0191	1	53270			88761	12328	61736	61838	98784	98784					0.03964295882940405
VVAWPAAGSR	10	Unmodified	_VVAWPAAGSR_					0	0	0		ENST00000330292.4_17:80207889-80208285:+|nuORF	ENST00000330292.4_17:80207889-80208285:+|nuORF	ENST00000330292.4_17:80207889-80208285:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.279983	1012.54541	0.19463	9.8731E-05	-0.1465	-7.4315E-05	0.04813	2.4416E-05	507.2800700283747	21.087	0.34415	21.158	20.91	21.254	0.071487	0.092429	-0.00061833	NaN	10.866	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21547			88762	12328	61736	61838							0.03964295882940405
VVCFQLTAQ	9	Unmodified	_VVCFQLTAQ_					0	0	0			REV__ENSG00000198792|ENST00000361906|TMEM184B	REV__ENSG00000198792|ENST00000361906|TMEM184B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.7490234375	2	504.762778	1007.511	-0.29421	-0.00014851	4.4469	0.0022446	4.1527	0.0020961	504.76467274988295	26.762	0.62002	26.762	26.489	27.109	0					35	14	3	0	0	0	0.024209	1	1437	1437		56.721	10.769	1	475910	+		88763	28478	61737	61839	98785	98785					0.007547116798150455
VVCFTEHF	8	Unmodified	_VVCFTEHF_					0	0	0			REV__ENST00000236147.4_1_1:169660781-169660883:-|nuORF	REV__ENST00000236147.4_1_1:169660781-169660883:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.7430114746094	2	491.228571	980.442588	-0.2491	-0.00012236	-3.5133	-0.0017258	-3.7624	-0.0018482	491.2265733769048	31.955	0.83748	31.955	31.386	32.224	0					43	20	3	0	0	0	0.027866	1	2123	2123		42.474	0	1	282200	+		88764	29430	61738	61840	98786	98786					-0.048415329000249585
VVCFTEHF	8	Unmodified	_VVCFTEHF_					0	0	0			REV__ENST00000236147.4_1_1:169660781-169660883:-|nuORF	REV__ENST00000236147.4_1_1:169660781-169660883:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.74322509765625	2	491.228571	980.442588	-0.31482	-0.00015465	-3.1974	-0.0015707	-3.5123	-0.0017253	491.2269747536443	31.737	0.85316	31.749	31.17	32.023	0.011797					38	20	2	0	0	0	0.027866	1	2079	2079		60.294	37.251	1	352450	+		88765	29430	61738	61840	98787	98787					-0.048415329000249585
VVCFTEHF	8	Unmodified	_VVCFTEHF_					0	0	0			REV__ENST00000236147.4_1_1:169660781-169660883:-|nuORF	REV__ENST00000236147.4_1_1:169660781-169660883:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.743408203125	2	491.228571	980.442588	-0.45478	-0.0002234	-2.4833	-0.0012199	-2.9381	-0.0014433	491.2273567727728	31.24	0.49035	31.309	30.955	31.445	0.068962					23	11	3	0	0	0	0.027866	1	2000	2000		40.573	5.3719	1	309960	+		88766	29430	61738	61840	98788	98788					-0.048415329000249585
VVCHLIVL	8	Unmodified	_VVCHLIVL_					0	0	0			REV__ENSG00000174808|ENST00000395743|BTC	REV__ENSG00000174808|ENST00000395743|BTC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.7540283203125	2	448.275324	894.536095	0.42342	0.00018981	3.7709	0.0016904	4.1943	0.0018802	448.2769187075216	39.53	0.77368	39.53	39.288	40.062	0					44	21	3	0	0	0	0.027866	1	3431	3431		33.493	13.011	1	3069100	+		88767	26894	61739	61841	98789	98789					0.08460811273062063
VVCIEKTGSA	10	Unmodified	_VVCIEKTGSA_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.75067138671875	2	503.765517	1005.51648	-0.7949	-0.00040044	0.82172	0.00041395	0.026822	1.3512E-05	503.76575439526056	34.565	2.489	34.561	33.829	36.318	-0.0045624					147	65	3	0	0	0	0.03519	1	2483	2483		26.693	0	1	653120	+		88768	22407	61740	61842	98790	98790					0.013943904716484212
VVCLFFVL	8	Unmodified	_VVCLFFVL_					0	0	0		L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|49|2|anti-sense	L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|49|2|anti-sense	L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|49|2|anti-sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	470.27239990234375	2	470.27225	938.529947	0.89577	0.00042125	-0.63503	-0.00029863	0.26074	0.00012262	470.2718642062893	91.209	1.3358	91.22	90.742	92.077	0.011276					80	31	4	0	0	0	1.0574	1	11482	11482		24.504	0	1	4377900			88769	17855	61741	61843	98791	98791					0.05822293041535431
VVCLFFVL	8	Unmodified	_VVCLFFVL_					0	0	0		L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|49|2|anti-sense	L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|49|2|anti-sense	L1PA6_dup1366|chr4:6835466-6836380:-|3.016997635715911|0.0388289879766383|6.28|493.0|49|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.27215576171875	2	470.27225	938.529947	0.12142	5.7102E-05	-0.42112	-0.00019804	-0.29969	-0.00014094	470.27204080654536	88.706	1.0467	88.575	88.277	89.324	-0.13135					54	24	3	0	0	0	1.0241	1	10831	10831		33.493	5.6107	1	328100			88770	17855	61741	61843	98792	98792					0.05822293041535431
VVCPSLNYEN	10	Unmodified	_VVCPSLNYEN_					0	0	0			REV__DNAH2|p.S2728C|1|0.09|ENSG00000183914|chr17:7797782-7797782|C/G|missense_variant	REV__DNAH2|p.S2728C|1|0.09|ENSG00000183914|chr17:7797782-7797782|C/G|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.267578125	2	569.265881	1136.51721	0.49154	0.00027982	2.808	0.0015985	3.2995	0.0018783	569.2673841540674	18.747	3.0543	18.543	17.667	20.722	-0.20371					134	61	4	0	0	0	1.1307	1	346	346		26.693	2.1737	1	307860	+		88771	19688	61742	61844	98793	98793					-0.04558814879305828
VVCPTILTED	10	Unmodified	_VVCPTILTED_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.3466796875	2	545.278457	1088.54236	-0.40143	-0.00021889	4.2893	0.0023389	3.8879	0.00212	545.782109576315	78.755	0.47536	78.599	78.34	78.815	-0.15591					13	10	2	0	0	0	0.03519	1	9366	9366		42.396	18.873	1	51059			88772	1359	61743	61845	98794	98794					0.0016323992326761072
VVCREASHA	9	Unmodified	_VVCREASHA_					0	0	0		nc|ENSG00000162959|Q9Y316-2|MEMO1;MEMO1|p.F268Lfs*16|1|0.21|ENSG00000162959|chr2:31868451-31868452|-/AAACTCATAT|frameshift_variant;ENSG00000162959|ENST00000404530|MEMO1	nc|ENSG00000162959|Q9Y316-2|MEMO1	nc|ENSG00000162959|Q9Y316-2|MEMO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.2716064453125	2	486.240001	970.465449	-0.26183	-0.00012731	-3.4956	-0.0016997	-3.7575	-0.001827	486.238322918233	33.118	0.4443	32.887	32.67	33.114	-0.23107					14	10	2	0	0	0	0.024466	1	2308	2308		25.45	8.977	1	74174			88773	18439	61744	61846	98795	98795					-0.020965137825555757
VVDAICTRGA	10	Unmodified	_VVDAICTRGA_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;UBE2G1-ANKFY1|4|fusion;UBE2G1-ANKFY1|3|fusion;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;UBE2G1-ANKFY1|7|fusion;UBE2G1-ANKFY1|6|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7796630859375	2	502.763309	1003.51206	-0.91759	-0.00046133	2.0824	0.001047	1.1648	0.00058564	502.7642694281427	53.384	0.435	53.237	52.948	53.383	-0.14724					23	11	3	0	0	0	0.03519	1	5767	5767		40.778	1.5253	1	272850			88774	9468	61745	61847	98796	98796					0.01044926048734851
VVDAVLPLLN	10	Unmodified	_VVDAVLPLLN_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.8208618164062	2	526.82115	1051.62775	-0.53959	-0.00028427	0.32782	0.0001727	-0.21177	-0.00011156	526.8212163315103	98.676	1.134	98.676	98.358	99.492	0					57	25	3	0	0	0	0.52982	1	12640	12640		84.916	9.8722	1	830150	+		88775	21230	61746	61848	98797	98797					0.10399773171252491
VVDAVLPLLN	10	Unmodified	_VVDAVLPLLN_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.8204345703125	2	526.82115	1051.62775	0.70528	0.00037156	-0.92723	-0.00048849	-0.22195	-0.00011693	526.8205285973048	98.783	0.99928	98.779	98.39	99.389	-0.0038834					55	22	3	0	0	0	0.71272	1	12569	12569		66.429	4.3219	1	770700	+		88776	21230	61746	61848	98798	98798					0.10399773171252491
VVDEHTGQY	9	Unmodified	_VVDEHTGQY_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.2413940429688	2	524.240721	1046.46689	-0.6312	-0.0003309	-0.24286	-0.00012732	-0.87406	-0.00045822	524.2404404954293	30.428	0.71942	30.184	29.905	30.624	-0.24415					36	16	3	0	0	0	0.014918	1	1939	1939		162.25	87.997	1	1611600			88777	4907	61747	61849	98799	98799					-0.054486012128108996
VVDEHTGQY	9	Unmodified	_VVDEHTGQY_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.2413940429688	2	524.240721	1046.46689	-0.72466	-0.0003799	0.073501	3.8532E-05	-0.65116	-0.00034136	524.2405300006134	30.292	0.97039	30.114	29.612	30.583	-0.17818					67	22	5	0	0	0	0.03666	2	1927	1915;1927		136.27	63.515	1	1549400			88778	4907	61747	61849	98800;98801	98801					-0.054486012128108996
VVDEHTGQY	9	Unmodified	_VVDEHTGQY_					0	0	0		nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	nc|ENSG00000135541|Q8N157-2|AHI1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.2410278320312	2	524.240721	1046.46689	-0.047661	-2.4986E-05	-0.40744	-0.0002136	-0.45511	-0.00023858	524.2401835386333	30.232	1.0569	30.082	29.542	30.599	-0.14952					70	24	5	0	0	0	0.03666	3	1888	1879;1888;1903		136.27	69.302	1	1468700			88779	4907	61747	61849	98802;98803;98804	98803					-0.054486012128108996
VVDEIFNEY	9	Unmodified	_VVDEIFNEY_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.2669677734375	2	564.266404	1126.51826	-0.28143	-0.0001588	0.028377	1.6012E-05	-0.25306	-0.00014279	564.2664054423625	73.262	1.0196	72.985	72.626	73.645	-0.2769					70	24	5	0	0	0	0.10464	2	8601	8589;8601		109.48	38.1	1	3213700			88780	2152	61748	61850	98805;98806	98806					-0.03994277238757604
VVDEIFNEY	9	Unmodified	_VVDEIFNEY_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.2664184570312	2	564.266404	1126.51826	-0.31106	-0.00017552	0.028026	1.5814E-05	-0.28304	-0.00015971	564.2663576024362	73.226	1.0493	72.961	72.638	73.687	-0.26479					66	25	4	0	0	0	0.10464	3	8617	8592;8604;8617		109.48	32.679	1	3902900			88781	2152	61748	61850	98807;98808;98809	98809					-0.03994277238757604
VVDEIFNEY	9	Unmodified	_VVDEIFNEY_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.2658081054688	2	564.266404	1126.51826	-0.50348	-0.0002841	0.13954	7.874E-05	-0.36394	-0.00020536	564.2664155553152	73.059	1.0531	72.862	72.583	73.636	-0.19731					66	25	4	0	0	0	0.041068	3	8577	8553;8565;8577		132.76	58.503	1	3438300			88782	2152	61748	61850	98810;98811;98812	98812					-0.03994277238757604
VVDGRTLKAS	10	Unmodified	_VVDGRTLKAS_					0	0	0		nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	nc|ENSG00000080802|O95628-9|CNOT4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3033447265625	2	523.303655	1044.59276	0.12304	6.4388E-05	-0.40431	-0.00021158	-0.28127	-0.00014719	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	1.1266	1	10424	10424		29.17	0.020503	1	3963900			88783	1694	61749	61851	98813	98813					0.07224530363282611
VVDIQGVGDLY	11	Unmodified	_VVDIQGVGDLY_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.308349609375	2	589.308603	1176.60265	0.10231	6.0289E-05	-0.66156	-0.00038986	-0.55926	-0.00032958	589.3079443945438	77.459	0.78421	77.216	76.873	77.657	-0.24232					30	19	2	0	0	0	0.79085	1	9235	9235		58.246	8.7102	1	654340			88784	2493	61750	61852	98814	98814					0.0214167357801216
VVDIQGVGDLY	11	Unmodified	_VVDIQGVGDLY_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.308603	1176.60265	-0.24194	-0.00014258	-0.29691	-0.00017497	-0.53885	-0.00031755	589.3080476023479	77.484	0.80263	77.222	76.933	77.735	-0.26202	-0.0067102	9.3845E-05	NaN	58.246	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563510			88785	2493	61750	61852							0.0214167357801216
VVDIQGVGDLY	11	Unmodified	_VVDIQGVGDLY_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	589.308603	1176.60265	-0.93079	-0.00054852	-0.01856	-1.0937E-05	-0.94935	-0.00055946	589.3083105390574	77.409	0.95227	77.247	76.742	77.694	-0.16196	0.018631	0.00042192	NaN	58.246	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722610			88786	2493	61750	61852							0.0214167357801216
VVDPAQKVTN	10	Unmodified	_VVDPAQKVTN_					0	0	0			REV__nc|ENSG00000196220|O43295-2|SRGAP3	REV__nc|ENSG00000196220|O43295-2|SRGAP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.794189453125	2	535.795663	1069.57677	-0.81313	-0.00043567	3.6032	0.0019306	2.79	0.0014949	535.7973521693403	92.15	1.4446	92.142	91.752	93.196	-0.0082932					102	34	4	0	0	0	1.0002	1	11643	11643		45.972	0	1	2387200	+		88787	28148	61751	61853	98815	98815					0.04476824126390966
VVDPGNIVSL	10	Unmodified	_VVDPGNIVSL_					0	0	0		CSMD3|p.E1446V|1|0.3|ENSG00000164796|chr8:112552618-112552618|T/A|missense_variant	CSMD3|p.E1446V|1|0.3|ENSG00000164796|chr8:112552618-112552618|T/A|missense_variant	CSMD3|p.E1446V|1|0.3|ENSG00000164796|chr8:112552618-112552618|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.3200378417969	2	506.787307	1011.56006	-0.23446	-0.00011882	4.0362	0.0020455	3.8017	0.0019267	506.78878688998	73.269	0.3722	73.279	73.068	73.44	0.0096512					13	9	2	0	0	0	0.03519	1	8885	8885		52.937	17.318	1	117180			88788	592	61752	61854	98816	98816					0.05474323240423473
VVDPLNGWMY	10	Oxidation (M)	_VVDPLNGWM(Oxidation (M))Y_		VVDPLNGWM(1)Y		VVDPLNGWM(110)Y	0	0	1		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	605.855712890625	2	605.284074	1208.5536	-0.96357	-0.00058324	1.3572	0.00082149	0.39362	0.00023825	605.2847440068144	82.361	0.82362	82.221	81.785	82.608	-0.14014					46	18	3	0	0	0	0.03519	1	9892	9892		112.41	91.574	1	365590			88789	3974	61753	61855	98817	98817		156			-0.04233937982621683
VVDPNGLARLW	11	Unmodified	_VVDPNGLARLW_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7	nc|ENSG00000010030|Q9Y603-8|ETV7	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	620.3457641601562	2	620.345855	1238.67716	0.13644	8.4641E-05	-0.21764	-0.00013501	-0.081199	-5.0371E-05	620.3456511995178	74.679	0.84049	74.404	74.132	74.973	-0.27573					48	19	4	0	0	0	0.026238	2	8799	8799;8812		128.6	82.63	1	1851600			88790	868	61754	61856	98818;98819	98818					0.06736481180041665
VVDPNGLARLW	11	Unmodified	_VVDPNGLARLW_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7	nc|ENSG00000010030|Q9Y603-8|ETV7	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	620.3464965820312	2	620.345855	1238.67716	-0.77615	-0.00048148	0.76152	0.00047241	-0.014629	-9.0753E-06	620.3461998600452	74.644	0.67434	74.381	74.142	74.816	-0.26326					48	15	4	0	0	0	0.12521	3	8811	8811;8823;8835		106.88	62.706	1	1421600			88791	868	61754	61856	98820;98821;98822	98820					0.06736481180041665
VVDPNGLARLW	11	Unmodified	_VVDPNGLARLW_					0	0	0		nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;nc|ENSG00000010030|Q9Y603-7|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7;ENSG00000010030|ENST00000340181|ETV7	nc|ENSG00000010030|Q9Y603-8|ETV7	nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	620.3455810546875	2	620.345855	1238.67716	0.61252	0.00037997	-0.78834	-0.00048904	-0.17582	-0.00010907	620.3452294140136	74.459	0.80373	74.276	74.005	74.809	-0.18278					51	18	4	0	0	0	0.0098899	3	8783	8770;8783;8795		140.11	76.806	1	1575200			88792	868	61754	61856	98823;98824;98825	98824					0.06736481180041665
VVDSLVHYGF	10	Unmodified	_VVDSLVHYGF_					0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.32958984375	2	568.292756	1134.57096	-0.35328	-0.00020077	0.63103	0.00035861	0.27775	0.00015784	568.2931785685707	91.571	0.76089	91.581	91.277	92.037	0.0099792					57	17	5	0	0	0	0.03519	1	11488	11488		16.473	0	1	640110	+		88793	23997	61755	61857	98826	98826					0.009057256147116277
VVDTLALGD	9	Unmodified	_VVDTLALGD_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	450.7607727050781	2	451.745108	901.475663	-0.69861	-0.00031559	2.6186	0.001183	1.92	0.00086736	451.74604148067215	39.543	0.87886	39.567	39.099	39.978	0.023727					46	24	2	0	0	0	0.024354	1	3326	3326		38.806	1.647	1	2207900	+		88794	22345	61756	61858	98827	98827					0.020983724236771195
VVEDKPAHS	9	Unmodified	_VVEDKPAHS_					0	0	0		nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF	nc|ENSG00000140470|Q8TE56-2|ADAMTS17	nc|ENSG00000140470|Q8TE56-2|ADAMTS17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	492.24542236328125	2	491.253631	980.49271	0.23434	0.00011512	4.348	0.002136	4.5823	0.0022511	491.2555245574212	83.424	2.1836	83.285	82.436	84.619	-0.1386					77	50	2	0	0	0	0.024511	1	10239	10239		19.104	6.1443	1	80274			88795	13252	61757	61859	98828	98828					0.0016829302946916869
VVEEPPPS	8	Unmodified	_VVEEPPPS_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	427.7404479980469	2	427.218726	852.422899	-0.33339	-0.00014243	3.1962	0.0013655	2.8628	0.001223	427.2195520291048	22.398	0.50544	22.213	22.094	22.6	-0.18539					13	10	2	0	0	0	0.027866	1	796	796		71.378	23.462	1	41593			88796	7665	61758	61860	98829	98829					-0.009215856391392663
VVEFLLQN	8	Unmodified	_VVEFLLQN_					0	0	0		ENSG00000164331|ENST00000296785|ANKRA2	ENSG00000164331|ENST00000296785|ANKRA2	ENSG00000164331|ENST00000296785|ANKRA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.260986328125	2	481.271293	960.528032	-0.043146	-2.0765E-05	1.0087	0.00048548	0.9656	0.00046472	481.27162963419846	79.977	0.75793	79.977	79.573	80.331	0					30	17	2	0	0	0	0.027866	1	9924	9924		40.573	1.7665	1	223330			88797	7263	61759	61861	98830	98830					0.04618955557282334
VVEHPYAI	8	Unmodified	_VVEHPYAI_					0	0	0			REV__ENSG00000114120|ENST00000324194|SLC25A36	REV__ENSG00000114120|ENST00000324194|SLC25A36	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	464.2805480957031	2	464.25036	926.486168	0.34619	0.00016072	-2.496	-0.0011588	-2.1498	-0.00099803	464.2514907944285	40.857	0.13967	40.88	40.83	40.97	0.023006					5	3	2	0	0	0	0.027866	1	3570	3570		39.021	18.075	1	32506	+		88798	22106	61760	61862	98831	98831					0.01998399868762135
VVEIRDGEE	9	Unmodified	_VVEIRDGEE_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.334228515625	2	523.261653	1044.50875	-0.21147	-0.00011065	-4.1019	-0.0021463	-4.3133	-0.002257	523.7600603757792	27.239	0.20765	27.082	27.018	27.225	-0.15664					7	4	2	0	0	0	0.024477	1	1453	1453		27.882	3.6795	1	21484			88799	6423	61761	61863	98832	98832					-0.011720455242766548
VVEIRVQATG	10	Unmodified	_VVEIRVQATG_					0	0	0			REV__ENSG00000272674|ENST00000609684|PCDHB16	REV__ENSG00000272674|ENST00000609684|PCDHB16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3109741210938	2	536.31148	1070.60841	0.57142	0.00030646	-0.43194	-0.00023165	0.13948	7.4807E-05	536.311298216663	97.061	1.2149	96.925	96.524	97.738	-0.13671					64	26	4	0	0	0	1.0816	1	12016	12016		35.152	4.6484	1	625010	+		88800	29171	61762	61864	98833	98833					0.07592816880310238
VVEITSLRFVF	11	Unmodified	_VVEITSLRFVF_					0	0	0		MCRS1|p.A436T|1|0.33|ENSG00000187778|chr12:49558726-49558726|C/T|missense_variant	MCRS1|p.A436T|1|0.33|ENSG00000187778|chr12:49558726-49558726|C/T|missense_variant	MCRS1|p.A436T|1|0.33|ENSG00000187778|chr12:49558726-49558726|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	437.257080078125	3	437.255334	1308.74417	1.1887	0.00051975	3.5175	0.0015381	4.7062	0.0020578	437.2568354988285	97.354	2.8643	97.354	96.484	99.348	-3.8147E-05					200	65	5	0	0	0	1.0123	1	12407	12407		34.087	1.0471	1	1114100			88801	17959	61763	61865	98834	98834					0.10215091671125265
VVEKLLLMS	9	Unmodified	_VVEKLLLMS_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.311767578125	2	516.312103	1030.60965	-0.060536	-3.1256E-05	2.6638	0.0013753	2.6033	0.0013441	516.3133481125043	98.115	3.0286	97.95	96.768	99.797	-0.16521					207	72	5	0	0	0	0.96322	1	12332	12332		27.882	3.3631	1	29455000			88802	3505	61764	61866	98835	98835					0.09557314924882121
VVEKVLTK	8	Unmodified	_VVEKVLTK_					0	0	0			REV__ENSG00000103187|ENST00000262428|COTL1	REV__ENSG00000103187|ENST00000262428|COTL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	458.2799377441406	2	458.29731	914.580068	-0.55987	-0.00025659	-2.9177	-0.0013372	-3.4775	-0.0015937	458.29640796419704	43.923	0.48588	43.818	43.544	44.03	-0.10468					21	12	2	0	0	0	0.027866	1	4084	4084		25.45	0	1	348570	+		88803	21362	61765	61867	98836	98836					0.11936118971050291
VVELDLKTV	9	Unmodified	_VVELDLKTV_					0	0	0		ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.306640625	2	508.305332	1014.59611	-0.13004	-6.61E-05	0.54325	0.00027614	0.41321	0.00021004	508.30595172057855	98.339	1.4526	98.339	97.415	98.867	0					56	33	3	0	0	0	0.2101	1	12564	12564		87.696	2.7809	1	339480			88804	16	61766	61868	98837	98837					0.0893978041730179
VVELDLKTV	9	Unmodified	_VVELDLKTV_					0	0	0		ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.304931640625	2	508.305332	1014.59611	1.0561	0.00053682	-1.4285	-0.00072613	-0.37242	-0.0001893	508.3044793341435	98.299	0.80177	98.175	97.947	98.749	-0.12413					35	18	2	0	0	0	0.091713	1	12197	12197		113.41	17.221	1	556590			88805	16	61766	61868	98838	98838					0.0893978041730179
VVELDLKTV	9	Unmodified	_VVELDLKTV_					0	0	0		ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	508.305332	1014.59611	0.21018	0.00010684	-0.68515	-0.00034827	-0.47497	-0.00024143	508.30486920656153	98.254	0.71362	98.264	97.979	98.693	0.010231	0.0072201	5.266E-05	NaN	113.41	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358910			88806	16	61766	61868							0.0893978041730179
VVELDLKTV	9	Unmodified	_VVELDLKTV_					0	0	0		ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	508.305332	1014.59611	0.55692	0.00028309	-0.63697	-0.00032378	-0.080054	-4.0692E-05	508.30494283370876	98.387	0.79891	98.385	98.014	98.813	-0.0020752	0.12852	0.00010164	NaN	113.41	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316360			88807	16	61766	61868							0.0893978041730179
VVELDLKTV	9	Unmodified	_VVELDLKTV_					0	0	0		ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant;ENSG00000122729|ENST00000309951|ACO1	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	ACO1|p.A794Pfs*20|1|0.6|ENSG00000122729|chr9:32448902-32448902|A/-|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	508.305332	1014.59611	-0.22438	-0.00011405	-0.18798	-9.5553E-05	-0.41236	-0.00020961	508.30510884182195	98.357	0.98793	98.192	98	98.988	-0.16521	-0.06457	0.00055808	NaN	113.41	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513780			88808	16	61766	61868							0.0893978041730179
VVELLRKR	8	Unmodified	_VVELLRKR_					0	0	0			REV__nc|ENSG00000159322|Q9BRR6-5|ADPGK	REV__nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.30072021484375	2	506.834926	1011.6553	0.24379	0.00012356	-0.60968	-0.00030901	-0.36588	-0.00018544	506.83441567943794	24.67	0.83293	24.749	24.501	25.334	0.078344					40	18	4	0	0	0	0.027866	1	1066	1066		33.516	0	1	291210	+		88809	36825	61767	61869	98839	98839					0.14993721222128897
VVEPGDTL	8	Unmodified	_VVEPGDTL_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	415.2483825683594	2	415.218726	828.422899	-0.35983	-0.00014941	-3.3155	-0.0013767	-3.6754	-0.0015261	415.21780334046014	35.758	0.20301	35.802	35.658	35.861	0.04406					6	4	2	0	0	0	0.027866	1	2705	2705		38.806	0	1	32477			88810	8181	61768	61870	98840	98840					0.0018241436087009788
VVERSLST	8	Unmodified	_VVERSLST_					0	0	0			REV__nc|ENSG00000240303|Q709F0-2|ACAD11	REV__nc|ENSG00000240303|Q709F0-2|ACAD11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	445.2277526855469	2	445.750724	889.486896	-0.95158	-0.00042417	1.2002	0.00053499	0.24863	0.00011083	445.7510256851315	26.014	0.86524	25.851	25.631	26.496	-0.16331					37	24	3	0	0	0	0.027866	1	1338	1338		54.776	7.119	1	645430	+		88811	37156	61769	61871	98841	98841					0.03773194517805223
VVETGPLPDL	10	Unmodified	_VVETGPLPDL_					0	0	0		TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant;ENSG00000104055|ENST00000220420|TGM5	TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	TGM5|p.P554Qfs*18|1|0.31|ENSG00000104055|chr15:43235522-43235523|-/GGCT|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7643432617188	2	520.28714	1038.55973	-0.89601	-0.00046618	3.2863	0.0017098	2.3902	0.0012436	520.2906650372838	84.193	0.47863	84.193	83.779	84.258	0					13	10	2	0	0	0	0.03519	1	10506	10506		20.947	0	1	26397			88812	2541	61770	61872	98842	98842					0.0419890352056882
VVETRHVL	8	Unmodified	_VVETRHVL_					0	0	0			REV__ENSG00000196353|ENST00000429747|CPNE4	REV__ENSG00000196353|ENST00000429747|CPNE4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	476.7824401855469	2	476.782359	951.550165	0.96166	0.0004585	-0.71498	-0.00034089	0.24668	0.00011761	476.7818126399353	40.793	0.77517	40.793	40.551	41.326	0					58	21	5	0	0	0	0.77775	1	3634	3634		60.972	7.6205	1	2797300	+		88813	28169	61771	61873	98843	98843					0.07245180025711306
VVFKKFGR	8	Unmodified	_VVFKKFGR_					0	0	0			REV__nc|ENSG00000173821|Q63HN8|RNF213;REV__RNF213-CSNK1D|1|fusion	REV__nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	489.81207275390625	2	490.805637	979.596721	-1.0968	-0.00053833	2.611	0.0012815	1.5141	0.00074314	490.8056998153811	25.833	0.37751	25.601	25.388	25.766	-0.2322					12	8	2	0	0	0	0.027866	1	1260	1260		19.36	0	1	101570	+		88814	26810;37445	61772	61874	98844	98844					0.10610664647651902
VVFLFSFV	8	Unmodified	_VVFLFSFV_					0	0	0		ENST00000407418.7_1_22:39258389-39258611:-|nuORF	ENST00000407418.7_1_22:39258389-39258611:-|nuORF	ENST00000407418.7_1_22:39258389-39258611:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2777404785156	2	479.275847	956.537141	0.4291	0.00020566	2.7845	0.0013345	3.2136	0.0015402	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	1.0472	1	10236	10236		29.842	0.69198	1	7158600			88815	13744	61773	61875	98845	98845					0.05713348913616301
VVFLGCLGLGY	11	Unmodified	_VVFLGCLGLGY_					0	0	0			REV__nc|ENSG00000136297|Q8IY49-3|MMD2	REV__nc|ENSG00000136297|Q8IY49-3|MMD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.7275390625	2	570.809728	1139.6049	1.0128	0.0005781	2.0211	0.0011537	3.0339	0.0017318	570.8100646792053	51.61	0.56241	51.426	51.179	51.741	-0.18404					27	14	3	0	0	0	0.024764	1	5317	5317		40.573	7.7602	1	506450	+		88816	23647	61774	61876	98846	98846					0.0406843078210386
VVFLMGWWKKM	11	Unmodified	_VVFLMGWWKKM_					0	0	0		ENST00000309964.8_1_4:56342137-56348912:-|nuORF	ENST00000309964.8_1_4:56342137-56348912:-|nuORF	ENST00000309964.8_1_4:56342137-56348912:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	475.26019287109375	3	475.590895	1423.75086	0.15372	7.3107E-05	3.9775	0.0018916	4.1312	0.0019647	475.5927011336771	43.82	0.363	43.851	43.629	43.992	0.030823					15	9	2	0	0	0	0.024804	1	4069	4069		27.047	17.401	1	122570			88817	12049	61775	61877	98847	98847					0.05592990026480038
VVFLNINQV	9	Unmodified	_VVFLNINQV_					0	0	0			REV__ENSG00000144028|ENST00000323853|SNRNP200	REV__ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.3037109375	2	523.305667	1044.59678	-0.57229	-0.00029948	-3.8031	-0.0019902	-4.3754	-0.0022897	523.3036214104253	85.222	2.9903	85.164	83.29	86.28	-0.057617					185	70	4	0	0	0	0.62163	1	10680	10680		51.335	6.9583	1	2871100	+		88818	24305	61776	61878	98848	98848					0.0762661985700106
VVFVRRLTAP	10	Unmodified	_VVFVRRLTAP_					0	0	0			REV__nc|ENSG00000116171|P22307-7|SCP2	REV__nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.3653564453125	2	579.361308	1156.70806	4.1547	0.0024071	2.299	0.001332	6.4537	0.003739	579.3626471766578	18.241	0.45977	18.305	18.14	18.599	0.063307					17	9	3	0	0	0	1.1217	1	235	235		21.96	2.8564	1	37973	+		88819	22263	61777	61879	98849	98849					0.13597679284930564
VVFVRRLTAP	10	Unmodified	_VVFVRRLTAP_					0	0	0			REV__nc|ENSG00000116171|P22307-7|SCP2	REV__nc|ENSG00000116171|P22307-7|SCP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	579.361308	1156.70806	2.0925	0.0012123	3.4938	0.0020242	5.5863	0.0032365	579.363302701161	18.018	0.44003	18.018	17.844	18.284	0	-0.10009	-0.00083214	NaN	21.96	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62857	+		88820	22263	61777	61879							0.13597679284930564
VVFVRRLTAP	10	Unmodified	_VVFVRRLTAP_					0	0	0			REV__nc|ENSG00000116171|P22307-7|SCP2	REV__nc|ENSG00000116171|P22307-7|SCP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	579.361308	1156.70806	-0.16146	-9.3542E-05	6.1503	0.0035633	5.9889	0.0034697	579.3648665542164	18.162	0.44232	18.031	17.86	18.302	-0.13147	-0.086895	0.002246	NaN	21.96	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52684	+		88821	22263	61777	61879							0.13597679284930564
VVFVRRLTAP	10	Unmodified	_VVFVRRLTAP_					0	0	0			REV__nc|ENSG00000116171|P22307-7|SCP2	REV__nc|ENSG00000116171|P22307-7|SCP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	579.361308	1156.70806	4.1547	0.0024071	2.299	0.001332	6.4537	0.003739	579.3626471766578	18.241	0.45977	18.305	18.14	18.599	0.063307	0.18698	-0.0022166	NaN	21.96	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37973	+		88822	22263	61777	61879							0.13597679284930564
VVGAASLGPL	10	Unmodified	_VVGAASLGPL_					0	0	0			REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2656555175781	2	442.26601	882.517468	-0.029686	-1.3129E-05	-1.1289	-0.0004993	-1.1586	-0.00051242	442.2652998935689	39.191	1.2632	39.191	38.433	39.696	0					93	34	4	0	0	0	0.62679	1	3377	3377		73.975	5.1879	1	11201000	+		88823	34691	61778	61880	98850	98850					0.07150972902854846
VVGAASLGPL	10	Unmodified	_VVGAASLGPL_					0	0	0			REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7878723144531	2	442.26601	882.517468	0.25453	0.00011257	2.212	0.00097829	2.4665	0.0010909	442.2670593652463	40.7	0.73783	40.7	40.347	41.085	0					25	20	2	0	0	0	0.03519	1	3554	3554		40.778	0	1	233650	+		88824	34691	61778	61880	98851	98851					0.07150972902854846
VVGAASLGPL	10	Unmodified	_VVGAASLGPL_					0	0	0			REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2665710449219	2	442.26601	882.517468	-0.51362	-0.00022716	-0.59909	-0.00026496	-1.1127	-0.00049211	442.26552280312796	39.247	1.2586	39.148	38.358	39.616	-0.098755					92	34	4	0	0	0	1.0004	1	3305	3305		45.952	1.8352	1	10338000	+		88825	34691	61778	61880	98852	98852					0.07150972902854846
VVGAGGPG	8	Unmodified	_VVGAGGPG_					0	0	0		ENSG00000260903|ENST00000562532|XKR7	REV__ENST00000529721.5_1_11:75201351-75201700:-|nuORF	REV__ENST00000529721.5_1_11:75201351-75201700:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	612.7756958007812	1	613.330402	612.323125	0.29728	0.00018233	-0.30743	-0.00018856	-0.01015	-6.2256E-06	613.33011442568	50.872	0.51737	50.692	50.39	50.908	-0.18071					17	13	2	0	0	0	0.027866	1	5224	5224		10.185	0	1	262190			88826	10945	61779	61881	98853	98853					0.0014564153757419263
VVGAGLDPR	9	Unmodified	_VVGAGLDPR_					0	0	0		ENST00000442267.2_1_4:141622749-141677260:-|nuORF	ENST00000442267.2_1_4:141622749-141677260:-|nuORF	ENST00000442267.2_1_4:141622749-141677260:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	442.2656555175781	2	442.253434	882.492316	-0.088578	-3.9174E-05	2.6692	0.0011805	2.5807	0.0011413	442.2547388590654	39.097	0.48968	39.097	38.868	39.357	0					30	13	3	0	0	0	0.024263	1	3349	3349		51.335	14.176	1	755450			88827	14378	61780	61882	98854	98854					0.046369181002773985
VVGAPRRP	8	Unmodified	_VVGAPRRP_					0	0	0		ENST00000380050.7_1_7:90225835-90225949:+|nuORF	ENST00000380050.7_1_7:90225835-90225949:+|nuORF	ENST00000380050.7_1_7:90225835-90225949:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	426.2641906738281	2	426.264136	850.51372	-0.73075	-0.00031149	0.66746	0.00028452	-0.063288	-2.6977E-05	426.26441211351226	23.754	0.8065	23.754	23.36	24.166	0					53	18	5	0	0	0	1.0017	2	974	974;985		37.028	1.8278	1	2731500			88828	13298	61781	61883	98855;98856	98855					0.08248347919663956
VVGAPRRP	8	Unmodified	_VVGAPRRP_					0	0	0		ENST00000380050.7_1_7:90225835-90225949:+|nuORF	ENST00000380050.7_1_7:90225835-90225949:+|nuORF	ENST00000380050.7_1_7:90225835-90225949:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.26409912109375	2	426.264136	850.51372	-0.81601	-0.00034784	0.67128	0.00028614	-0.14473	-6.1693E-05	426.2644227504415	23.76	0.93377	23.699	23.229	24.163	-0.06086					65	21	5	0	0	0	0.95417	2	963	951;963		44.531	7.5026	1	2633000			88829	13298	61781	61883	98857;98858	98858					0.08248347919663956
VVGAPRRP	8	Unmodified	_VVGAPRRP_					0	0	0		ENST00000380050.7_1_7:90225835-90225949:+|nuORF	ENST00000380050.7_1_7:90225835-90225949:+|nuORF	ENST00000380050.7_1_7:90225835-90225949:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	426.26409912109375	2	426.264136	850.51372	0.098292	4.1898E-05	-0.089843	-3.8297E-05	0.008449	3.6015E-06	426.2640566355832	23.675	0.98676	23.751	23.195	24.182	0.076241					65	22	4	0	0	0	1.0133	1	917	917		35.201	0	1	2570600			88830	13298	61781	61883	98859	98859					0.08248347919663956
VVGIVVYAGH	10	Unmodified	_VVGIVVYAGH_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	508.2277526855469	2	507.292559	1012.57057	-0.40679	-0.00020636	-2.5278	-0.0012824	-2.9346	-0.0014887	507.2910895533823	30.229	0.63821	29.985	29.525	30.163	-0.24415					24	14	2	0	0	0	0.03519	1	1937	1937		35.201	1.6851	1	99625			88831	5800	61782	61884	98860	98860					0.06478350685517853
VVGIVVYAGH	10	Unmodified	_VVGIVVYAGH_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2276306152344	2	507.292559	1012.57057	-0.28942	-0.00014682	-3.3473	-0.001698	-3.6367	-0.0018449	507.2907179175166	30.184	0.63732	30.035	29.542	30.18	-0.14952					21	14	2	0	0	0	0.03519	1	1887	1887		35.201	6.0512	1	134960			88832	5800	61782	61884	98861	98861					0.06478350685517853
VVGIVVYAGH	10	Unmodified	_VVGIVVYAGH_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	507.292559	1012.57057	-1.383	-0.0007016	-3.4129	-0.0017313	-4.7959	-0.0024329	507.2903352058255	30.394	0.49722	30.394	30.137	30.634	0	0.25833	-0.00039376	NaN	26.796	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110080			88833	5800	61782	61884							0.06478350685517853
VVGIVVYAGH	10	Unmodified	_VVGIVVYAGH_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	507.292559	1012.57057	-0.64004	-0.00032469	-3.8147	-0.0019352	-4.4548	-0.0022599	507.29009051310067	30.289	0.454	30.298	30.042	30.496	0.0086708	0.16257	-0.00080143	NaN	26.796	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90828			88834	5800	61782	61884							0.06478350685517853
VVGIVVYAGH	10	Unmodified	_VVGIVVYAGH_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.292559	1012.57057	-1.0516	-0.00053347	-3.5831	-0.0018177	-4.6348	-0.0023512	507.29019802925217	30.064	0.66396	30.139	29.838	30.502	0.074314	0.0033857	-0.0005665	NaN	26.796	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102840			88835	5800	61782	61884							0.06478350685517853
VVGLAVFII	9	Unmodified	_VVGLAVFII_					0	0	0		ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	466.2533264160156	2	465.804771	929.59499	-0.41929	-0.00019531	-3.7326	-0.0017387	-4.1519	-0.001934	465.80299071215126	27.034	0.58492	26.792	26.41	26.995	-0.24217					16	13	2	0	0	0	0.024475	1	1434	1434		14.664	7.4707	1	137030			88836	9188	61783	61885	98862	98862					0.1273761083905356
VVGLHGML	8	Unmodified	_VVGLHGML_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	413.5220031738281	2	413.236199	824.457844	1.7168	0.00070944	3.3935	0.0014023	5.1103	0.0021118	413.23771087350804	36.961	1.0196	36.961	36.613	37.632	0					28	26	2	0	0	0	0.027866	1	2979	2979		43.626	26.921	1	258110	+		88837	22210	61784	61886	98863	98863					0.03859378687820936
VVGLHGML	8	Unmodified	_VVGLHGML_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	413.236199	824.457844	0.062097	2.5661E-05	4.3516	0.0017982	4.4137	0.0018239	413.2380997264835	36.952	0.76331	36.989	36.544	37.307	0.036854	0.014231	0.00018522	NaN	43.626	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311290	+		88838	22210	61784	61886							0.03859378687820936
VVGLRQGR	8	Unmodified	_VVGLRQGR_					0	0	0		ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.30218505859375	2	442.774868	883.535184	0.28615	0.0001267	-4.2877	-0.0018985	-4.0015	-0.0017718	442.77269828214855	63.65	0.71887	63.398	63.156	63.875	-0.25141					42	19	4	0	0	0	0.027866	1	7453	7453		28.254	8.8943	1	472760			88839	13737	61785	61887	98864	98864					0.08875732948376935
VVGLRQGR	8	Unmodified	_VVGLRQGR_					0	0	0		ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	ENST00000406775.6_2_7:69064374-69064902:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	442.774868	883.535184	0.49535	0.00021933	-4.8678	-0.0021553	-4.3725	-0.001936	442.7725835898063	63.427	0.57554	63.427	63.161	63.736	0	-0.010604	0.00044191	NaN	35.201	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581640			88840	13737	61785	61887							0.08875732948376935
VVGLRVCAAL	10	Unmodified	_VVGLRVCAAL_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.2828674316406	2	500.802237	999.589921	-1.3035	-0.00065279	-4.1787	-0.0020927	-5.4822	-0.0027455	500.79978301942896	37.973	0.42975	37.973	37.769	38.199	0					23	12	3	0	0	0	0.03519	1	3110	3110		30.504	0	1	220780	+		88841	22314	61786	61888	98865	98865					0.09010983704774844
VVGNITLL	8	Unmodified	_VVGNITLL_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.7618408203125	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	0.96719	2	11075	11014;11075		42.474	1.9018	1	53595000			88842	11074	61787	61889	98866;98867	98867					0.09099874391188223
VVGNITLL	8	Unmodified	_VVGNITLL_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.7616271972656	2	414.763104	827.511654	0.17372	7.2053E-05	-3.8235	-0.0015859	-3.6498	-0.0015138	414.76147745809476	87.954	2.2305	87.817	87.304	89.534	-0.13613					149	53	5	0	0	0	0.91239	1	10737	10737		50.025	5.4935	1	32442000			88843	11074	61787	61889	98868	98868					0.09099874391188223
VVGPIFFLL	9	Unmodified	_VVGPIFFLL_					0	0	0			REV__nc|ENSG00000110148|P32239-3|CCKBR	REV__nc|ENSG00000110148|P32239-3|CCKBR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.81365966796875	2	502.812596	1003.61064	0.95576	0.00048057	0.96832	0.00048688	1.9241	0.00096745	502.8131940383032	96.131	1.8999	96.133	95.739	97.639	0.0020676					149	43	5	0	0	0	0.93795	1	12172	12172		29.842	0	1	20046000	+		88844	21842	61788	61890	98869	98869					0.10897897356085195
VVGQVNERA	9	Unmodified	_VVGQVNERA_					0	0	0			REV__ENST00000392995.7_1_17:58734367-58740910:+|nuORF	REV__ENST00000392995.7_1_17:58734367-58740910:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.31561279296875	2	486.267073	970.519593	-1.074	-0.00052224	-2.9637	-0.0014412	-4.0377	-0.0019634	486.26565027791605	39.806	0.94532	39.693	39.15	40.095	-0.11222					49	25	3	0	0	0	0.024436	1	3369	3369		23.042	0	1	731400	+		88845	26513	61789	61891	98870	98870					0.03315401640657001
VVGSLLLSVL	10	Unmodified	_VVGSLLLSVL_					0	0	0			REV__ENSG00000140279|ENST00000389039|DUOX2	REV__ENSG00000140279|ENST00000389039|DUOX2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3132629394531	2	500.326068	998.637583	-0.31401	-0.00015711	-0.74968	-0.00037508	-1.0637	-0.00053219	500.325741047828	76.242	0.16348	76.074	75.932	76.095	-0.16854					6	3	2	0	0	0	0.03519	1	9020	9020		27.882	0	1	67518	+		88846	23997	61790	61892	98871	98871					0.1382096117661149
VVGSWLLAR	9	Unmodified	_VVGSWLLAR_					0	0	0		ENSG00000186204|ENST00000550308|CYP4F12;nc|ENSG00000186204|Q9HCS2-2|CYP4F12;ENST00000451750.5_1_19:15783919-15791491:+|nuORF	ENSG00000186204|ENST00000550308|CYP4F12	ENSG00000186204|ENST00000550308|CYP4F12	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	500.28326416015625	2	500.800552	999.58655	-1.2313	-0.00061665	-0.91283	-0.00045715	-2.1442	-0.0010738	500.7998667236306	37.889	0.38021	37.806	37.57	37.95	-0.082512					17	10	2	0	0	0	0.024506	1	3089	3089		30.504	0	1	219680			88847	9529	61791	61893	98872	98872					0.08674056922416185
VVGVATARAP	10	Unmodified	_VVGVATARAP_					0	0	0		ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.78363037109375	2	470.782359	939.550165	0.20738	9.7632E-05	4.141	0.0019495	4.3484	0.0020472	470.78412015492074	46.62	1.1227	46.524	46.295	47.418	-0.096649					73	30	3	0	0	0	0.74632	1	4512	4512		64.207	4.089	1	5816600			88848	8527	61792	61894	98873	98873					0.0779718002570462
VVGVATARAP	10	Unmodified	_VVGVATARAP_					0	0	0		ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	ENSG00000175093|ENST00000310546|SPSB4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.783935546875	2	470.782359	939.550165	0.18503	8.7107E-05	4.0974	0.001929	4.2824	0.0020161	470.78413225707163	46.879	1.157	46.61	46.341	47.498	-0.26939					88	31	5	0	0	0	0.74632	2	4533	4533;4557		64.207	5.4253	1	10185000			88849	8527	61792	61894	98874;98875	98874					0.0779718002570462
VVGVRRGR	8	Unmodified	_VVGVRRGR_					0	0	0			REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF	REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.78961181640625	2	449.78831	897.562067	0.67823	0.00030506	4.0007	0.0017995	4.6789	0.0021045	449.7892801556935	20.012	0.34378	19.789	19.582	19.926	-0.22344					9	6	2	0	0	0	0.027866	1	479	479		18.324	0	1	12192	+		88850	31507	61793	61895	98876	98876					0.10918841559566772
VVGWDSAPL	9	Unmodified	_VVGWDSAPL_					0	0	0			REV__ENST00000505991.1_1_4:25378960-25382068:+|nuORF	REV__ENST00000505991.1_1_4:25378960-25382068:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	471.7899475097656	2	472.247818	942.481082	-0.21968	-0.00010374	0.6591	0.00031126	0.43942	0.00020751	472.2477668823579	47.848	0.46904	47.907	47.677	48.146	0.059097					28	13	3	0	0	0	0.024262	1	4741	4741		38.806	0	1	844470	+		88851	34018	61794	61896	98877	98877					0.007540960061305668
VVGWLQQLQ	9	Unmodified	_VVGWLQQLQ_					0	0	0		nc|ENSG00000012660|Q9NYP7-3|ELOVL5	nc|ENSG00000012660|Q9NYP7-3|ELOVL5	nc|ENSG00000012660|Q9NYP7-3|ELOVL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	535.8154907226562	2	535.803291	1069.59203	-0.38402	-0.00020576	-2.2511	-0.0012061	-2.6351	-0.0014119	535.8014546738682	71.516	0.18172	71.527	71.472	71.653	0.010735					6	4	2	0	0	0	0.024443	1	8606	8606		35.201	10.682	1	216090			88852	18034	61795	61897	98878	98878					0.06001735714221468
VVHAAVLLLF	10	Unmodified	_VVHAAVLLLF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.7842407226562	2	541.342052	1080.66955	-0.75374	-0.00040803	2.9864	0.0016167	2.2326	0.0012086	541.3449541483288	67.498	0.4364	67.21	66.951	67.388	-0.28834					14	10	2	0	0	0	0.03519	1	8028	8028		19.36	0	1	96593			88853	1235	61796	61898	98879	98879					0.13244373650422858
VVHATLGPQPD	11	Unmodified	_VVHATLGPQPD_					0	0	0			REV__ENST00000471162.5_1_3:49044864-49051550:+|nuORF	REV__ENST00000471162.5_1_3:49044864-49051550:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3193969726562	2	567.301113	1132.58767	-0.74787	-0.00042427	-1.4808	-0.00084003	-2.2286	-0.0012643	567.8022780137885	57.322	0.59598	57.322	56.936	57.532	0					31	15	3	0	0	0	0.024741	1	6424	6424		30.318	3.6248	1	227450	+		88854	27180	61797	61899	98880	98880					0.026682265006684247
VVHHRALVLA	10	Unmodified	_VVHHRALVLA_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.2100830078125	2	557.845825	1113.6771	-0.72972	-0.00040707	-0.5899	-0.00032908	-1.3196	-0.00073614	557.8453718859944	34.581	0.52424	34.405	34.168	34.692	-0.17557					27	12	3	0	0	0	0.03519	1	2584	2584		31.955	11.958	1	439420			88855	1416	61798	61900	98881	98881					0.12480525970704548
VVHKVLSASN	10	Unmodified	_VVHKVLSASN_					0	0	0		EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.M1030Sfs*18|1|0.14|ENSG00000128829|chr15:40001153-40001168|ATGATGGCCCAGATCT/-|frameshift_variant	EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant	EIF2AK4|p.R1614Dfs*5|1|0.08|ENSG00000128829|chr15:40034390-40034390|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.3062133789062	2	527.306198	1052.59784	0.95797	0.00050514	-3.4131	-0.0017998	-2.4552	-0.0012946	527.304365478722	98.029	1.3703	97.904	97.417	98.787	-0.12414					55	32	3	0	0	0	1.1265	1	12150	12150		24.519	3.5723	1	608280			88856	690	61799	61901	98882	98882					0.07364834225904815
VVHLPIVY	8	Unmodified	_VVHLPIVY_					0	0	0		nc|ENSG00000279078|Q9HBX3|SND1-IT1	nc|ENSG00000279078|Q9HBX3|SND1-IT1	nc|ENSG00000279078|Q9HBX3|SND1-IT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.30328369140625	2	470.286746	938.558939	1.0992	0.00051694	-0.9301	-0.00043741	0.16909	7.9522E-05	470.28615820718215	67.936	0.4482	67.68	67.455	67.903	-0.25516					18	10	2	0	0	0	0.027866	1	7804	7804		24.504	7.139	1	146650			88857	18802	61800	61902	98883	98883					0.08720153662181929
VVHPHDVS	8	Unmodified	_VVHPHDVS_					0	0	0			REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	REV__ATG2B|p.G1392Vfs*21|1|0.06|ENSG00000066739|chr14:96309581-96309581|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	445.2279357910156	2	445.229959	888.445365	-0.2891	-0.00012872	-4.0568	-0.0018062	-4.3459	-0.0019349	445.22803051653125	26.11	1.524	25.942	25.662	27.186	-0.16816					93	39	4	0	0	0	1.0017	1	1309	1309		37.028	5.0736	1	5333000	+		88858	19182	61801	61903	98884	98884					-0.0033194145086099525
VVHPLRVL	8	Unmodified	_VVHPLRVL_					0	0	0		MAP4K1|p.D217V|1|0.44|ENSG00000104814|chr19:38612626-38612626|T/A|missense_variant	MAP4K1|p.D217V|1|0.44|ENSG00000104814|chr19:38612626-38612626|T/A|missense_variant	MAP4K1|p.D217V|1|0.44|ENSG00000104814|chr19:38612626-38612626|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	467.2447204589844	2	466.805637	931.596721	-0.43564	-0.00020336	1.6683	0.00077878	1.2327	0.00057542	466.80631241766605	32.665	0.7048	32.676	32.523	33.228	0.011799					29	18	2	0	0	0	0.027866	1	2295	2295		14.664	0	1	185350			88859	17946	61802	61904	98885	98885					0.12818664647659261
VVHPVHLTS	9	Unmodified	_VVHPVHLTS_					0	0	0		HYAL4|p.Q15H|1|0.23|ENSG00000106302|chr7:123868318-123868318|A/T|missense_variant	HYAL4|p.Q15H|1|0.23|ENSG00000106302|chr7:123868318-123868318|A/T|missense_variant	HYAL4|p.Q15H|1|0.23|ENSG00000106302|chr7:123868318-123868318|A/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.7994689941406	2	494.782359	987.550165	-0.27432	-0.00013573	0.40656	0.00020116	0.13224	6.5431E-05	494.78193666331936	93.319	0.67758	93.327	93.013	93.691	0.0077286					23	15	2	0	0	0	0.024466	1	11809	11809		18.324	1.8513	1	139360			88860	17756	61803	61905	98886	98886					0.05589180025708629
VVHPVHLTS	9	Unmodified	_VVHPVHLTS_					0	0	0		HYAL4|p.Q15H|1|0.23|ENSG00000106302|chr7:123868318-123868318|A/T|missense_variant	HYAL4|p.Q15H|1|0.23|ENSG00000106302|chr7:123868318-123868318|A/T|missense_variant	HYAL4|p.Q15H|1|0.23|ENSG00000106302|chr7:123868318-123868318|A/T|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	494.782359	987.550165	0.26017	0.00012873	-0.55447	-0.00027434	-0.2943	-0.00014561	494.7820044840337	93.229	0.67762	93.229	92.967	93.645	0	-0.058126	-0.00038176	NaN	18.324	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146670			88861	17756	61803	61905							0.05589180025708629
VVHVGQGARP	10	Unmodified	_VVHVGQGARP_					0	0	0			REV__ENSG00000188396|ENST00000339355|DYNLT4	REV__ENSG00000188396|ENST00000339355|DYNLT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2259216308594	2	510.290882	1018.56721	1.6402	0.00083699	-1.8146	-0.00092597	-0.17437	-8.898E-05	510.29004910604317	24.818	0.35009	24.643	24.467	24.817	-0.17546					18	7	3	0	0	0	0.03519	1	1111	1111		35.618	0	1	135220	+		88862	28037	61804	61906	98887	98887					0.05867100631519406
VVHVGQGARP	10	Unmodified	_VVHVGQGARP_					0	0	0			REV__ENSG00000188396|ENST00000339355|DYNLT4	REV__ENSG00000188396|ENST00000339355|DYNLT4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	510.290882	1018.56721	-0.32682	-0.00016678	0.25448	0.00012986	-0.072343	-3.6916E-05	510.2910568287403	24.693	0.39279	24.519	24.34	24.733	-0.17484	-0.062038	0.0010946	NaN	35.618	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118460	+		88863	28037	61804	61906							0.05867100631519406
VVHYRFVL	8	Unmodified	_VVHYRFVL_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.8260498046875	2	516.803094	1031.59164	-0.5944	-0.00030719	4.1564	0.002148	3.562	0.0018408	516.8027847541864	56.866	0.2248	56.866	56.778	57.003	0					13	6	3	0	0	0	0.027866	1	6356	6356		35.201	1.0282	1	133600	+		88864	19906	61805	61907	98888	98888					0.07710360785040393
VVICTLWL	8	Unmodified	_VVICTLWL_					0	0	0		nc|ENSG00000173612|Q5T6X5-3|GPRC6A;ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	nc|ENSG00000173612|Q5T6X5-3|GPRC6A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	473.7757568359375	2	473.775157	945.53576	1.2414	0.00058814	0.23913	0.00011329	1.4805	0.00070143	473.7755803838696	98.52	0.5243	98.395	98.111	98.635	-0.12413					25	11	4	0	0	0	0.95417	1	12217	12217		44.531	7.372	1	254320			88865	8392	61806	61908	98889	98889					0.06081391553209414
VVIEIRPELL	10	Unmodified	_VVIEIRPELL_					0	0	0			REV__nc|ENSG00000178057|Q9BU61-2|NDUFAF3	REV__nc|ENSG00000178057|Q9BU61-2|NDUFAF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.8662719726562	2	590.868631	1179.72271	-0.15177	-8.9679E-05	-3.2769	-0.0019362	-3.4287	-0.0020259	590.8666615789272	102.37	1.7496	102.24	101.9	103.65	-0.12931					85	41	5	0	0	0	1.1307	1	12730	12730		26.693	0	1	5173900	+		88866	27162	61807	61909	98890	98890					0.14003706642415636
VVIFDTVI	8	Unmodified	_VVIFDTVI_					0	0	0		ENSG00000173372|ENST00000374642|C1QA	ENSG00000173372|ENST00000374642|C1QA	ENSG00000173372|ENST00000374642|C1QA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	452.5653991699219	2	453.270761	904.52697	0.73927	0.00033509	-3.9171	-0.0017755	-3.1778	-0.0014404	453.26883209501153	18.985	0.64313	18.824	18.441	19.084	-0.1608					13	12	2	0	0	0	0.027866	1	388	388		8.2313	0.54101	1	29851			88867	8369	61808	61910	98891	98891					0.0708874118837457
VVIFLFLGLL	10	Unmodified	_VVIFLFLGLL_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	567.370278	1132.726	-1.0409	-0.00059059	-0.5119	-0.00029043	-1.5528	-0.00088103	567.3693874452111	90.601	0.38024	90.446	90.264	90.644	-0.1552					11	8	2	0	0	0	0.03519	1	11113	11113		26.796	7.4361	1	39168			88868	9491	61809	61911	98892	98892					0.16495001487078298
VVIFLFLGLL	10	Unmodified	_VVIFLFLGLL_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3294677734375	2	567.370278	1132.726	-0.22247	-0.00012622	-0.9943	-0.00056414	-1.2168	-0.00069036	567.3704575373323	91.97	0.26096	91.847	91.63	91.891	-0.12242					6	5	2	0	0	0	0.03519	1	11283	11283		19.36	0	1	36058			88869	9491	61809	61911	98893	98893					0.16495001487078298
VVIFTVNSL	9	Unmodified	_VVIFTVNSL_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.29400634765625	2	496.294768	990.574983	0.049076	2.4356E-05	0.41377	0.00020535	0.46285	0.00022971	496.29487258843386	82.174	0.54004	82.174	81.909	82.449	0					23	12	2	0	0	0	0.024354	1	10228	10228		57.811	9.8957	1	235960			88870	6178	61810	61912	98894	98894					0.07931815108440787
VVIFTVNSL	9	Unmodified	_VVIFTVNSL_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.294768	990.574983	0.98403	0.00048837	-0.67219	-0.0003336	0.31184	0.00015476	496.2944337906958	82.27	0.5019	82.16	81.921	82.422	-0.11006	0.058014	-0.00071585	NaN	57.811	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191540			88871	6178	61810	61912							0.07931815108440787
VVIFTVNSL	9	Unmodified	_VVIFTVNSL_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	496.294768	990.574983	0.26857	0.00013329	0.48685	0.00024162	0.75542	0.00037491	496.2950661385486	82.262	0.4314	82.042	81.785	82.217	-0.22015	-0.060776	0.0004346	NaN	57.811	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117080			88872	6178	61810	61912							0.07931815108440787
VVIFTVNSL	9	Unmodified	_VVIFTVNSL_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	496.294768	990.574983	0.15173	7.5305E-05	-0.039047	-1.9379E-05	0.11269	5.5926E-05	496.29470265344696	82.23	0.56168	82.049	81.856	82.418	-0.18079	-0.053369	-8.7398E-05	NaN	57.811	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110050			88873	6178	61810	61912							0.07931815108440787
VVIFTVNSL	9	Unmodified	_VVIFTVNSL_					0	0	0		nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	nc|ENSG00000151116|Q8IX04-4|UEVLD	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	496.294768	990.574983	-0.93013	-0.00046162	1.2278	0.00060933	0.29764	0.00014772	496.29548231688153	82.161	0.5635	82.021	81.827	82.39	-0.14014	-0.08141	0.00117	NaN	57.811	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100470			88874	6178	61810	61912							0.07931815108440787
VVIIAVAQV	9	Unmodified	_VVIIAVAQV_					0	0	0			REV__nc|ENSG00000115750|Q53T94-2|TAF1B	REV__nc|ENSG00000115750|Q53T94-2|TAF1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.76666259765625	2	456.299853	910.585153	-0.57321	-0.00026155	3.4485	0.0015735	2.8753	0.001312	456.3013102403308	39.431	0.95718	39.455	39.206	40.163	0.023727					56	26	3	0	0	0	0.024386	1	3314	3314		33.516	9.0116	1	296280	+		88875	22228	61811	61913	98895	98895					0.1262842283365444
VVIKLLLKI	9	Unmodified	_VVIKLLLKI_					0	0	0			REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	REV__nc|ENSG00000173889|Q8NDX5-3|PHC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.825439453125	2	519.886096	1037.75764	-0.81295	-0.00042264	-2.4866	-0.0012927	-3.2995	-0.0017154	519.8845787961412	81.552	0.20426	81.421	81.298	81.502	-0.13075					7	4	2	0	0	0	0.024436	1	10113	10113		47.916	1.9636	1	67611	+		88876	36951	61812	61914	98896	98896					0.24026994241035027
VVIKVLILI	9	Unmodified	_VVIKVLILI_					0	0	0		ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	ENST00000537553.5_1_12:30863433-30867904:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	505.32415771484375	2	505.372821	1008.73109	-0.40231	-0.00020332	-2.9214	-0.0014764	-3.3237	-0.0016797	505.3717779692901	79.123	0.49876	79.123	78.825	79.323	0					18	11	2	0	0	0	0.024541	1	9830	9830		12.959	0	1	204650			88877	16375	61813	61915	98897	98897					0.227073053497179
VVILMIPI	8	Unmodified	_VVILMIPI_					0	0	0		nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	448.7547912597656	2	449.295725	896.576897	0.38011	0.00017078	3.7185	0.0016707	4.0986	0.0018415	449.2972609243479	39.432	0.37268	39.432	39.254	39.627	0					20	10	2	0	0	0	0.027866	1	3419	3419		5.0869	0	1	210860			88878	3237	61814	61916	98898	98898					0.12447152592676503
VVIPSIPHPS	10	Unmodified	_VVIPSIPHPS_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2633056640625	2	523.305667	1044.59678	-1.0949	-0.00057295	-3.1698	-0.0016588	-4.2646	-0.0022317	523.8037352813533	54.117	0.18354	53.981	53.837	54.021	-0.13617					10	5	3	0	0	0	0.03519	1	5706	5706		37.159	2.9866	1	143010			88879	8321	61815	61917	98899	98899					0.0762661985700106
VVIQQPSL	8	Unmodified	_VVIQQPSL_					0	0	0		ENSG00000164056|ENST00000651917|SPRY1	ENSG00000164056|ENST00000651917|SPRY1	ENSG00000164056|ENST00000651917|SPRY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2657470703125	2	442.26601	882.517468	-0.029686	-1.3129E-05	-1.1289	-0.0004993	-1.1586	-0.00051242	442.2652998935689	39.191	1.2632	39.191	38.433	39.696	0					93	34	4	0	0	0	0.68164	2	3362	3327;3362		68.787	2.3575	1	11201000			88880	7200	61816	61918	98900;98901	98901					0.07150972902854846
VVIQQPSL	8	Unmodified	_VVIQQPSL_					0	0	0		ENSG00000164056|ENST00000651917|SPRY1	ENSG00000164056|ENST00000651917|SPRY1	ENSG00000164056|ENST00000651917|SPRY1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.265380859375	2	442.26601	882.517468	-0.51362	-0.00022716	-0.59909	-0.00026496	-1.1127	-0.00049211	442.26552280312796	39.247	1.2586	39.148	38.358	39.616	-0.098755					92	34	4	0	0	0	0.56592	1	3375	3375		79.451	0	1	10338000			88881	7200	61816	61918	98902	98902					0.07150972902854846
VVIRIPVIR	9	Unmodified	_VVIRIPVIR_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7562866210938	2	532.868769	1063.72298	-0.23808	-0.00012687	-0.10041	-5.3508E-05	-0.3385	-0.00018038	532.8685567195774	58.829	0.4461	58.648	58.426	58.872	-0.18134					14	10	2	0	0	0	0.024541	1	6496	6496		7.6903	6.3626	1	221070			88882	6159	61817	61919	98903	98903					0.19367171152907758
VVIRRLPPT	9	Unmodified	_VVIRRLPPT_					0	0	0		ENSG00000125351|ENST00000276201|UPF3B;nc|ENSG00000125351|Q9BZI7-2|UPF3B;UPF3B|p.V151Sfs*6|1|0.4|ENSG00000125351|chrX:119845216-119845217|-/T|frameshift_variant	ENSG00000125351|ENST00000276201|UPF3B	ENSG00000125351|ENST00000276201|UPF3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.2632446289062	2	525.842751	1049.67095	-0.72387	-0.00038064	0.81263	0.00042732	0.088762	4.6675E-05	525.8428847348978	55.756	0.40414	55.854	55.561	55.965	0.098011					15	10	2	0	0	0	0.024466	1	6107	6107		42.474	16.9	1	109820			88883	4097	61818	61920	98904	98904					0.1481000773917458
VVIYVCDDP	9	Unmodified	_VVIYVCDDP_					0	0	0			REV__ENSG00000101883|ENST00000217999|RHOXF1	REV__ENSG00000101883|ENST00000217999|RHOXF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.2883911132812	2	511.746793	1021.47903	-0.69503	-0.00035568	2.1661	0.0011085	1.4711	0.00075282	511.7483150909972	83.699	0.55855	83.608	83.385	83.943	-0.090454					16	12	2	0	0	0	0.024466	1	10477	10477		18.324	0	1	61139	+		88884	21262	61819	61921	98905	98905					-0.030847007939883042
VVKAGTLE	8	Unmodified	_VVKAGTLE_					0	0	0			REV__ENST00000559758.5_1_15:76566725-76584849:-|nuORF	REV__ENST00000559758.5_1_15:76566725-76584849:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	409.5826110839844	2	408.744911	815.475269	-0.293	-0.00011976	1.647	0.00067321	1.354	0.00055345	408.74549348051346	34.947	0.14838	34.925	34.828	34.976	-0.021763					5	3	2	0	0	0	0.027866	1	2633	2633		23.042	0	1	29014	+		88885	24007	61820	61922	98906	98906					0.06014997494480667
VVKARNKEI	9	Unmodified	_VVKARNKEI_					0	0	0			REV__nc|ENSG00000142661|Q5VTT5-3|MYOM3	REV__nc|ENSG00000142661|Q5VTT5-3|MYOM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.8085327148438	2	528.82984	1055.64513	-0.42706	-0.00022584	3.0811	0.0016294	2.654	0.0014035	528.8316587961984	49.816	0.93392	49.89	49.503	50.437	0.074196					59	26	4	0	0	0	0.024381	1	5107	5107		55.504	20.303	1	1458400	+		88886	24175	61821	61923	98907	98907					0.11953113496883816
VVKCWKRG	8	Unmodified	_VVKCWKRG_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2679443359375	2	488.281472	974.548391	-0.19593	-9.5667E-05	3.837	0.0018735	3.6411	0.0017779	488.2837632290934	43.525	0.14341	43.556	43.45	43.593	0.030823					6	3	2	0	0	0	0.027866	1	4024	4024		42.474	25.109	1	60286			88887	1273;3041	61822	61924	98908	98908					0.06009847736095253
VVKCWKRG	8	Unmodified	_VVKCWKRG_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	488.281472	974.548391	-0.64461	-0.00031475	6.5689	0.0032075	5.9243	0.0028927	488.284565310812	43.595	0.84269	43.483	43.145	43.988	-0.1124	-0.037845	6.9325E-05	NaN	52.299	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2002900			88888	1273;3041	61822	61924							0.06009847736095253
VVKCWKRG	8	Unmodified	_VVKCWKRG_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	488.281472	974.548391	-0.76141	-0.00037178	6.6293	0.003237	5.8679	0.0028652	488.2845823170494	43.748	0.84255	43.51	43.174	44.016	-0.23778	-0.0098852	0.00012832	NaN	52.299	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2091700			88889	1273;3041	61822	61924							0.06009847736095253
VVKDLQSTN	9	Unmodified	_VVKDLQSTN_					0	0	0		nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.7572326660156	2	502.274564	1002.53457	-1.0092	-0.0005069	-0.15124	-7.5965E-05	-1.1605	-0.00058287	502.27441768046214	43.872	0.67397	43.727	43.425	44.099	-0.14471					43	18	3	0	0	0	0.024323	1	4102	4102		53.351	19.836	1	1082900			88890	1701	61823	61925	98909	98909					0.03340848718005418
VVKEDAFYSW	10	Unmodified	_VVKEDAFYSW_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	622.3032836914062	2	622.303321	1242.59209	0.13058	8.1259E-05	-0.45055	-0.00028038	-0.31997	-0.00019912	622.303016244771	64.03	1.3804	63.802	63.475	64.856	-0.22774					88	34	4	0	0	0	0.03397	3	7253	7253;7261;7274		152.06	85.632	1	3702500			88891	3392	61824	61926	98910;98911;98912	98910					-0.019503090764374065
VVKEDAFYSW	10	Unmodified	_VVKEDAFYSW_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	622.3031616210938	2	622.303321	1242.59209	-1.0636	-0.00066191	0.90341	0.00056219	-0.16024	-9.9717E-05	622.3038130132048	63.969	1.0542	63.776	63.456	64.51	-0.19243					78	26	4	0	0	0	0.0059825	3	7264	7255;7264;7279		177.3	106.49	1	3806300			88892	3392	61824	61926	98913;98914;98915	98914					-0.019503090764374065
VVKEDAFYSW	10	Unmodified	_VVKEDAFYSW_					0	0	0		nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-3|EIF4G1	nc|ENSG00000114867|Q04637-3|EIF4G1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	622.3027954101562	2	622.303321	1242.59209	-0.07413	-4.6131E-05	-0.023108	-1.438E-05	-0.097238	-6.0511E-05	622.3032072311712	64.097	0.89733	63.839	63.565	64.463	-0.25825					72	22	4	0	0	0	0.0059825	3	7255	7255;7263;7277		177.3	94.554	1	3364100			88893	3392	61824	61926	98916;98917;98918	98916					-0.019503090764374065
VVKERLEL	8	Unmodified	_VVKERLEL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.V33499Sfs*21|1|0.19|ENSG00000155657|chr2:178531198-178531198|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;TTN|p.Q30999Kfs*3|1|0.26|ENSG00000155657|chr2:178540248-178540248|G/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.S20301Tfs*4|1|0.12|ENSG00000155657|chr2:178582978-178582979|-/G|frameshift_variant;TTN|p.D17865Efs*2|1|0.32|ENSG00000155657|chr2:178593782-178593783|-/T|frameshift_variant;TTN|p.I17675Nfs*3|1|0.49|ENSG00000155657|chr2:178594547-178594548|-/T|frameshift_variant;TTN|p.G13470Wfs*7|1|0.39|ENSG00000155657|chr2:178621493-178621494|-/A|frameshift_variant;TTN|p.V12975Sfs*5|1|0.13|ENSG00000155657|chr2:178631202-178631203|-/T|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.3088684082031	2	493.305667	984.596781	0.2922	0.00014414	-0.37171	-0.00018337	-0.079509	-3.9222E-05	493.3053484200315	18.526	0.44603	18.322	18.064	18.51	-0.20371					23	8	4	0	0	0	0.89627	1	310	310		51.335	0	1	231320			88894	6479	61825	61927	98919	98919					0.10386619856978996
VVKFAGLLQD	10	Unmodified	_VVKFAGLLQD_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167114257812	2	545.318774	1088.623	-0.23737	-0.00012944	-3.7176	-0.0020273	-3.955	-0.0021567	545.3166336400518	87.084	2.4623	87.084	85.708	88.17	0					208	58	4	0	0	0	1.0719	1	11001	11001		36.447	0.82846	1	3529900			88895	1055	61826	61928	98920	98920					0.08222889028479585
VVKFAGLLQD	10	Unmodified	_VVKFAGLLQD_					0	0	0		ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	ENSG00000038532|ENST00000409790|CLEC16A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3165893554688	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0393	1	11425	11425		40.778	6.6056	1	12792000			88896	1055	61826	61928	98921	98921					0.08222889028479585
VVKGHRPELP	10	Unmodified	_VVKGHRPELP_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.3193969726562	2	566.33529	1130.65603	-0.65677	-0.00037195	0.53524	0.00030312	-0.12153	-6.8827E-05	566.3354228379612	57.373	0.49267	57.373	57.111	57.603	0					34	12	4	0	0	0	0.03519	1	6424	6424		34.173	29.856	1	919120			88897	9226	61827	61929	98922	98922					0.09592515871190699
VVKGHRPELP	10	Unmodified	_VVKGHRPELP_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4;RIPK4|p.S405Pfs*63|1|0.18|ENSG00000183421|chr21:41744000-41744009|CTCAGAGGAG/-|frameshift_variant	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	566.33529	1130.65603	0.12847	7.2758E-05	-0.39002	-0.00022088	-0.26155	-0.00014812	566.3350303922397	57.593	0.45589	57.418	57.19	57.646	-0.1749	0.0052131	-0.00084084	NaN	26.693	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	755290			88898	9226	61827	61929							0.09592515871190699
VVKGKLYKN	9	Unmodified	_VVKGKLYKN_					0	0	0			REV__ENST00000393618.5_1_7:105910735-105925330:-|nuORF	REV__ENST00000393618.5_1_7:105910735-105925330:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.8272705078125	2	524.829309	1047.64407	-0.67594	-0.00035475	-3.8331	-0.0020117	-4.509	-0.0023665	524.8271537362227	97.918	2.5544	97.918	97.191	99.746	0					178	58	6	0	0	0	0.97516	1	12576	12576		25.45	1.2474	1	14120000	+		88899	21568	61828	61930	98923	98923					0.12214899127980061
VVKGQPAH	8	Unmodified	_VVKGQPAH_					0	0	0		nc|ENSG00000153789|Q6ZTR7|CIBAR2;ENSG00000153789|ENST00000539556|CIBAR2	nc|ENSG00000153789|Q6ZTR7|CIBAR2	nc|ENSG00000153789|Q6ZTR7|CIBAR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	417.9209899902344	2	418.24287	834.471186	0.27814	0.00011633	-0.13202	-5.5217E-05	0.14612	6.1112E-05	418.2426315001423	45.904	0.4125	45.904	45.714	46.126	0					17	11	2	0	0	0	0.027866	1	4493	4493		28.254	14.479	1	168700			88900	6356	61829	61931	98924	98924					0.04732952791414391
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.7618713378906	2	414.761761	827.508969	1.0345	0.00042909	-1.5889	-0.00065903	-0.55439	-0.00022994	414.76104676582395	87.72	2.4947	87.72	87.152	89.647	0					199	59	6	0	0	0	1.0133	11	11121	11012;11024;11036;11048;11060;11072;11084;11096;11109;11121;11135		35.201	14.719	1	52577000	+		88901	28421	61830	61932	98925;98926;98927;98928;98929;98930;98931;98932;98933;98934;98935	98934					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	414.7618408203125	2	414.761761	827.508969	1.8796	0.00077959	-1.8054	-0.00074882	0.07419	3.0771E-05	414.76100000344024	110.14	0.5537	110.14	109.96	110.51	0					30	14	3	0	0	0	1.0017	2	14002	14002;14007		37.028	15.326	1	362270	+		88902	28421	61830	61932	98936;98937	98936					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.7616271972656	2	414.761761	827.508969	0.82084	0.00034045	-1.2213	-0.00050653	-0.40042	-0.00016608	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	0.95417	4	11050	11050;11062;11125;11149		44.531	19.081	1	53595000	+		88903	28421	61830	61932	98938;98939;98940;98941	98938					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.7618103027344	2	414.761761	827.508969	0.89316	0.00037045	-1.4281	-0.00059233	-0.53497	-0.00022189	414.761127402026	87.767	2.46	87.786	87.26	89.72	0.018555					174	58	5	0	0	0	1.0572	11	10937	10937;10948;10960;10972;10984;10996;11008;11021;11034;11047;11060		28.254	13.59	1	41862000	+		88904	28421	61830	61932	98942;98943;98944;98945;98946;98947;98948;98949;98950;98951;98952	98942					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.76190185546875	2	414.761761	827.508969	-0.33499	-0.00013894	-0.1614	-6.6944E-05	-0.4964	-0.00020589	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	1.0572	6	10670	10670;10718;10754;10779;10791;10828		28.254	1.4582	1	36536000	+		88905	28421	61830	61932	98953;98954;98955;98956;98957;98958	98953					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.76177978515625	2	414.761761	827.508969	-0.11281	-4.6791E-05	0.38952	0.00016156	0.27671	0.00011477	414.7618481739228	110.56	0.5822	110.43	110.11	110.69	-0.12524					39	18	3	0	0	0	1.0572	1	13583	13583		28.254	6.5519	1	182020	+		88906	28421	61830	61932	98959	98959					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	414.7615051269531	2	414.761761	827.508969	0.17372	7.2053E-05	-0.58633	-0.00024319	-0.41261	-0.00017113	414.76147745809476	87.954	2.2305	87.817	87.304	89.534	-0.13613					149	53	5	0	0	0	0.95417	7	10701	10680;10689;10701;10713;10725;10749;10761		44.531	16.277	1	32442000	+		88907	28421	61830	61932	98960;98961;98962;98963;98964;98965;98966	98962					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.76214599609375	2	414.761761	827.508969	0.29023	0.00012038	-0.81645	-0.00033863	-0.52622	-0.00021826	414.7613841509049	87.889	2.3301	87.752	87.289	89.619	-0.13744					147	55	6	0	0	0	1.0572	3	10663	10663;10687;10735		28.254	2.8041	1	22642000	+		88908	28421	61830	61932	98967;98968;98969	98967					0.08831463776903092
VVKGVKQLS	9	Unmodified	_VVKGVKQLS_					0	0	0			REV__ENST00000475975.5_1_22:30758047-30767232:+|nuORF	REV__ENST00000475975.5_1_22:30758047-30767232:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	479.30821	956.601866	-0.38848	-0.0001862	-1.3433	-0.00064387	-1.7318	-0.00083007	479.308789175221	25.778	0.2158	25.743	25.682	25.898	-0.034395					6	4	2	0	0	0	0.024294	1	1262	1262		55.504	2.1528	1	13821	+		88909	27986	61831	61933	98970	98970					0.12182923719615246
VVKGVKSMKAM	11	Unmodified	_VVKGVKSMKAM_					0	0	0			REV__nc|ENSG00000172456|Q96C11-4|FGGY	REV__nc|ENSG00000172456|Q96C11-4|FGGY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.34326171875	2	589.343412	1176.67227	-0.33817	-0.0001993	-0.66363	-0.0003911	-1.0018	-0.0005904	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0521	1	11101	11101		24.519	0	1	6196800	+		88910	26671	61832	61934	98971	98971					0.09100137721407009
VVKGVKSMKAM	11	Unmodified	_VVKGVKSMKAM_					0	0	0			REV__nc|ENSG00000172456|Q96C11-4|FGGY	REV__nc|ENSG00000172456|Q96C11-4|FGGY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3433837890625	2	589.343412	1176.67227	-0.57069	-0.00033633	-0.47959	-0.00028264	-1.0503	-0.00061898	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0183	1	11739	11739		32.751	6.0576	1	17343000	+		88911	26671	61832	61934	98972	98972					0.09100137721407009
VVKGVVLCAS	10	Unmodified	_VVKGVVLCAS_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7908935546875	2	487.788795	973.563038	0.37956	0.00018514	3.3532	0.0016356	3.7327	0.0018208	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.0393	1	10052	10052		40.778	3.6191	1	2659000	+		88912	20383	61833	61935	98973	98973					0.0751987509358969
VVKHCNIE	8	Unmodified	_VVKHCNIE_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.2457275390625	2	471.247295	940.480036	0.28424	0.00013395	-4.1229	-0.0019429	-3.8387	-0.001809	471.2451444515998	47.231	1.0126	46.961	46.695	47.708	-0.26939					67	27	4	0	0	0	0.75307	1	4608	4608		62.978	4.1965	1	3069500	+		88913	27569	61834	61936	98974	98974					0.00741558365587025
VVKIDPNI	8	Unmodified	_VVKIDPNI_					0	0	0			REV__ENSG00000013441|ENST00000321356|CLK1	REV__ENSG00000013441|ENST00000321356|CLK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.7454528808594	2	449.273835	896.533118	-0.64035	-0.00028769	0.70893	0.00031851	0.06858	3.0811E-05	449.2730277490645	47.202	0.21059	47.261	47.144	47.354	0.059097					8	5	2	0	0	0	0.027866	1	4660	4660		12.959	0	1	88042	+		88914	19957	61835	61937	98975	98975					0.08071259419898524
VVKKASGL	8	Unmodified	_VVKKASGL_					0	0	0		nc|ENSG00000175305|O96020-2|CCNE2;ENSG00000175305|ENST00000308108|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	nc|ENSG00000175305|O96020-2|CCNE2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	401.2618408203125	2	401.263271	800.511988	0.25207	0.00010115	-3.7878	-0.0015199	-3.5358	-0.0014188	401.2616516837039	85.433	1.2566	85.375	84.98	86.237	-0.057617					73	29	4	0	0	0	1.0574	1	10702	10702		19.36	0	1	3809400			88915	8548	61836	61938	98976	98976					0.10375294111042876
VVKKKKFK	8	Unmodified	_VVKKKKFK_					0	0	0		nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1	nc|ENSG00000053918|P51787-2|KCNQ1	nc|ENSG00000053918|P51787-2|KCNQ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	502.8136901855469	2	502.852587	1003.69062	-0.52788	-0.00026545	-2.198	-0.0011053	-2.7259	-0.0013707	502.85159946630324	96.308	0.24726	96.151	96.049	96.296	-0.15646					8	5	2	0	0	0	0.027866	1	11904	11904		8.2313	8.2313	1	53158			88916	1166	61837	61939	98977	98977					0.1889238374993738
VVKKSLITFV	10	Unmodified	_VVKKSLITFV_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	567.368267	1132.72198	-1.3741	-0.00077964	-3.0733	-0.0017437	-4.4474	-0.0025233	567.3660933925669	91.599	0.34502	91.45	91.31	91.655	-0.1487					10	7	2	0	0	0	0.03519	1	11221	11221		13.454	5.7638	1	45248			88917	9740	61838	61940	98978	98978					0.16092911993359849
VVKKTLITF	9	Unmodified	_VVKKTLITF_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8414306640625	2	524.841885	1047.66922	-0.17008	-8.9263E-05	-0.087664	-4.601E-05	-0.25774	-0.00013527	524.8416927025081	46.599	0.7867	46.502	46.259	47.046	-0.096649					52	21	4	0	0	0	0.34489	1	4513	4513		69.628	23.655	1	3369700			88918	10034	61839	61941	98979	98979					0.14728953930534772
VVKKTLITF	9	Unmodified	_VVKKTLITF_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.841552734375	2	524.841885	1047.66922	-0.020862	-1.0949E-05	-0.47313	-0.00024832	-0.49399	-0.00025927	524.8413894522371	46.879	0.67139	46.61	46.341	47.013	-0.26939					51	18	4	0	0	0	0.16638	1	4537	4537		95.815	27.028	1	3605900			88919	10034	61839	61941	98980	98980					0.14728953930534772
VVKKTLITF	9	Unmodified	_VVKKTLITF_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.84130859375	2	524.841885	1047.66922	-0.43733	-0.00022953	-0.00032099	-1.6847E-07	-0.43765	-0.0002297	524.8417025377316	46.718	0.61317	46.524	46.273	46.886	-0.19387					50	17	4	0	0	0	0.2101	2	4507	4507;4525		87.696	52.078	1	3683300			88920	10034	61839	61941	98981;98982	98981					0.14728953930534772
VVKKVSNSFV	10	Unmodified	_VVKKVSNSFV_					0	0	0			REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|14	REV__chr15:53523322-53540662|353|34.83|0.17|7.69|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|14	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8301391601562	2	553.832049	1105.64954	-0.19573	-0.0001084	-3.5323	-0.0019563	-3.728	-0.0020647	553.8299427251326	87.332	2.8036	87.153	85.402	88.206	-0.17875					168	66	4	0	0	0	1.0393	1	10611	10611		40.778	1.972	1	1711900	+		88921	19371	61840	61942	98983	98983					0.10094577919812764
VVKLENWAT	9	Unmodified	_VVKLENWAT_					0	0	0			REV__ENSG00000030304|ENST00000374448|MUSK	REV__ENSG00000030304|ENST00000374448|MUSK	MSMS	OPSCC_40_ClassI_Rep-3	6	530.2923583984375	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.92	1	101.75	101.25	102.25	-0.17178								0	0	0	0.63578	1	12644	12644		34.173	5.023	1		+		88922	20043	61841	61943	98984	98984					0.04910029477309763
VVKLGHPVY	9	Unmodified	_VVKLGHPVY_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.3003234863281	2	506.302927	1010.5913	0.51478	0.00026063	-3.7728	-0.0019102	-3.2581	-0.0016496	506.3011435467887	95.628	0.99898	95.506	94.985	95.984	-0.12251					52	22	3	0	0	0	0.85941	1	11791	11791		35.201	3.6709	1	209160	+		88923	20675	61842	61944	98985	98985					0.0864294106518173
VVKLGHPVY	9	Unmodified	_VVKLGHPVY_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.302927	1010.5913	-0.39237	-0.00019866	-5.258	-0.0026622	-5.6504	-0.0028608	506.30157759438464	95.518	1.1083	95.518	95.007	96.115	0	0.021731	-0.0018905	NaN	35.201	58	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325450	+		88924	20675	61842	61944							0.0864294106518173
VVKLGHPVY	9	Unmodified	_VVKLGHPVY_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.302927	1010.5913	0.17103	8.6593E-05	-5.9902	-0.0030329	-5.8192	-0.0029463	506.3013392121827	95.448	0.94417	95.451	94.957	95.901	0.0033798	-0.045137	-0.0026319	NaN	35.201	56	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311180	+		88925	20675	61842	61944							0.0864294106518173
VVKLGHPVY	9	Unmodified	_VVKLGHPVY_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.302927	1010.5913	0.44254	0.00022406	-5.2985	-0.0026826	-4.856	-0.0024586	506.3011732689801	95.534	1.0718	95.537	94.964	96.036	0.0024948	0.040632	-0.0019314	NaN	35.201	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291070	+		88926	20675	61842	61944							0.0864294106518173
VVKLGHPVY	9	Unmodified	_VVKLGHPVY_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	506.302927	1010.5913	0.049479	2.5051E-05	-3.2096	-0.001625	-3.1602	-0.0016	506.3013302268512	95.575	0.99744	95.438	94.938	95.936	-0.13689	-0.058078	0.00018375	NaN	35.201	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233580	+		88927	20675	61842	61944							0.0864294106518173
VVKLGHPVY	9	Unmodified	_VVKLGHPVY_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	506.302927	1010.5913	0.51478	0.00026063	-3.7728	-0.0019102	-3.2581	-0.0016496	506.3011435467887	95.628	0.99898	95.506	94.985	95.984	-0.12251	0.0092283	-0.00038656	NaN	35.201	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209160	+		88928	20675	61842	61944							0.0864294106518173
VVKLGHPVY	9	Unmodified	_VVKLGHPVY_					0	0	0			REV__ENSG00000081177|ENST00000685843|EXD2	REV__ENSG00000081177|ENST00000685843|EXD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	506.302927	1010.5913	-0.47375	-0.00023986	-2.7565	-0.0013956	-3.2303	-0.0016355	506.30162671944913	95.68	1.0415	95.528	95.012	96.054	-0.15186	0.031624	0.00064254	NaN	35.201	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200460	+		88929	20675	61842	61944							0.0864294106518173
VVKLNIIESY	10	Unmodified	_VVKLNIIESY_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3441162109375	2	589.344989	1176.67542	-0.46523	-0.00027418	-2.689	-0.0015847	-3.1542	-0.0018589	589.3432591363344	95.498	0.94806	95.361	95.112	96.06	-0.13689					59	21	4	0	0	0	1.118	1	11752	11752		30.318	2.4355	1	845610	+		88930	28824	61843	61945	98986	98986					0.09415427371436635
VVKMFYSF	8	Unmodified	_VVKMFYSF_					0	0	0		nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENSG00000211455|ENST00000389032|STK38L;ENSG00000112079|ENST00000229812|STK38	nc|ENSG00000211455|Q9Y2H1-2|STK38L	nc|ENSG00000211455|Q9Y2H1-2|STK38L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2875061035156	2	510.764789	1019.51502	0.43004	0.00021965	0.91816	0.00046897	1.3482	0.00068861	510.7669417455633	71.512	0.5667	71.306	71.051	71.618	-0.20613					19	13	2	0	0	0	0.027866	1	8380	8380		18.324	2.6826	1	140200			88931	3169	61844	61946	98987	98987					0.006048011735401815
VVKMILKL	8	Unmodified	_VVKMILKL_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;ENST00000541058.1_1_12:67663497-67675834:+|nuORF;ENST00000539434.1_1_12:67663527-67686741:+|nuORF	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	472.28765869140625	2	472.322274	942.629995	-0.57464	-0.00027142	-0.87879	-0.00041507	-1.4534	-0.00068649	472.3217877307065	94.29	0.29442	94.153	93.878	94.172	-0.13779					9	6	2	0	0	0	0.027866	1	11599	11599		19.36	15.044	1	73304			88932	3121	61845	61947	98988	98988					0.15638530375338178
VVKMILKL	8	Unmodified	_VVKMILKL_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;ENST00000541058.1_1_12:67663497-67675834:+|nuORF;ENST00000539434.1_1_12:67663527-67686741:+|nuORF	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	472.322274	942.629995	-0.15773	-7.4497E-05	8.6139	0.0040686	8.4562	0.0039941	472.32605600344584	94.207	0.51939	94.213	93.971	94.49	0.0059814	-0.025767	0.0061865	NaN	19.36	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98729			88933	3121	61845	61947							0.15638530375338178
VVKMRIKEI	9	Unmodified	_VVKMRIKEI_					0	0	0		ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	ENSG00000120057|ENST00000266066|SFRP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.3505859375	2	558.352094	1114.68964	-0.27279	-0.00015231	-3.413	-0.0019057	-3.6858	-0.002058	558.3501386336501	49.877	1.2426	49.877	49.399	50.642	0					99	35	4	0	0	0	0.39228	1	5177	5177		66.429	0	1	5628300			88934	3790	61846	61948	98989	98989					0.1368780131872427
VVKNTERGV	9	Unmodified	_VVKNTERGV_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904357910156	2	501.290548	1000.56654	0.66235	0.00033203	-0.83167	-0.00041691	-0.16932	-8.4879E-05	501.2900181386547	83.249	2.8312	83.038	81.496	84.327	-0.21159					176	65	4	0	0	0	0.87448	1	10063	10063		34.173	1.3601	1	3151900			88935	6395	61847	61949	98990	98990					0.06628261191804086
VVKNTERGV	9	Unmodified	_VVKNTERGV_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2904357910156	2	501.290548	1000.56654	0.077777	3.8989E-05	-0.46946	-0.00023533	-0.39168	-0.00019634	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	0.94809	1	10380	10380		29.15	2.4566	1	10074000			88936	6395	61847	61949	98991	98991					0.06628261191804086
VVKNTLVLTY	10	Unmodified	_VVKNTLVLTY_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	575.3455810546875	2	575.347532	1148.68051	-1.1631	-0.00066918	-2.3888	-0.0013744	-3.5519	-0.0020436	575.3460130844637	97.061	1.8236	97.061	96.615	98.439	0					112	41	5	0	0	0	1.1088	1	12392	12392		31.53	3.6476	1	3789000	+		88937	37200	61848	61950	98992	98992					0.1121173123403878
VVKNTLVLTY	10	Unmodified	_VVKNTLVLTY_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.345458984375	2	575.347532	1148.68051	0.60113	0.00034586	-4.2399	-0.0024394	-3.6388	-0.0020935	575.3449194062623	96.969	1.4094	96.978	96.487	97.896	0.0089111					102	31	5	0	0	0	1.089	1	12339	12339		34.173	1.422	1	3650400	+		88938	37200	61848	61950	98993	98993					0.1121173123403878
VVKNTLVLTY	10	Unmodified	_VVKNTLVLTY_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3456420898438	2	575.347532	1148.68051	0.52304	0.00030093	-4.1315	-0.0023771	-3.6085	-0.0020761	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	1.1088	1	12342	12342		31.53	1.2121	1	4068000	+		88939	37200	61848	61950	98994	98994					0.1121173123403878
VVKNVGLT	8	Unmodified	_VVKNVGLT_					0	0	0		ENSG00000120899|ENST00000346049|PTK2B;nc|ENSG00000120899|Q14289-2|PTK2B	ENSG00000120899|ENST00000346049|PTK2B	ENSG00000120899|ENST00000346049|PTK2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	416.2315368652344	2	415.260728	828.506903	0.18683	7.7584E-05	1.1858	0.00049243	1.3727	0.00057002	415.26109089121627	21.355	0.52743	21.178	20.967	21.494	-0.17721					15	10	2	0	0	0	0.027866	1	646	646		37.159	2.9866	1	22202			88940	3845	61849	61951	98995	98995					0.08578990248417995
VVKPRVLS	8	Unmodified	_VVKPRVLS_					0	0	0			REV__MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	REV__MCM3|p.T368Pfs*11|1|0.4|ENSG00000112118|chr6:52277131-52277131|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	450.25079345703125	2	449.297645	896.580737	-0.6302	-0.00028315	0.77604	0.00034867	0.14584	6.5525E-05	449.29786721182944	35.64	0.3571	35.64	35.492	35.849	0					9	8	2	0	0	0	0.027866	1	2743	2743		7.6903	0	1	23637	+		88941	21968	61850	61952	98996	98996					0.12830958410745552
VVKPVQPSGPQ	11	Unmodified	_VVKPVQPSGPQ_					0	0	0		DDR2|p.E516Q|1|0.08|ENSG00000162733|chr1:162772065-162772065|G/C|missense_variant	DDR2|p.E516Q|1|0.08|ENSG00000162733|chr1:162772065-162772065|G/C|missense_variant	DDR2|p.E516Q|1|0.08|ENSG00000162733|chr1:162772065-162772065|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2674560546875	2	568.327131	1134.63971	2.03	0.0011537	-1.869	-0.0010622	0.161	9.1501E-05	568.3259352350777	24.342	0.30188	24.161	23.983	24.285	-0.18089					11	6	2	0	0	0	0.024752	1	1005	1005		32.812	17.171	1	72350			88942	626	61851	61953	98997	98997					0.07777389914417654
VVKPVQPSGPQ	11	Unmodified	_VVKPVQPSGPQ_					0	0	0		DDR2|p.E516Q|1|0.08|ENSG00000162733|chr1:162772065-162772065|G/C|missense_variant	DDR2|p.E516Q|1|0.08|ENSG00000162733|chr1:162772065-162772065|G/C|missense_variant	DDR2|p.E516Q|1|0.08|ENSG00000162733|chr1:162772065-162772065|G/C|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	568.327131	1134.63971	-0.69592	-0.00039551	1.9176	0.0010898	1.2217	0.00069433	568.3278953393065	24.112	0.22653	24.19	24.048	24.275	0.078344	0.01621	0.0027621	NaN	32.812	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22916			88943	626	61851	61953							0.07777389914417654
VVKRKSAL	8	Unmodified	_VVKRKSAL_					0	0	0		ENSG00000137054|ENST00000377798|POLR1E;nc|ENSG00000137054|Q9GZS1-1|POLR1E;ENST00000442009.6_1_9:37489340-37503196:+|nuORF	ENSG00000137054|ENST00000377798|POLR1E	ENSG00000137054|ENST00000377798|POLR1E	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	450.80328369140625	2	450.803094	899.591636	1.3204	0.00059524	-1.8723	-0.00084404	-0.5519	-0.0002488	450.8021137829464	17.936	0.24944	17.782	17.607	17.857	-0.15403					8	4	2	0	0	0	1.0106	1	246	246		35.618	5.1146	1	135840			88944	5082	61852	61954	98998	98998					0.13782360785035053
VVKSFQNS	8	Unmodified	_VVKSFQNS_					0	0	0			REV__ENSG00000128594|ENST00000249363|LRRC4	REV__ENSG00000128594|ENST00000249363|LRRC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.74444580078125	2	454.745442	907.476331	0.059719	2.7157E-05	-1.482	-0.00067391	-1.4222	-0.00064675	454.744685532615	101.18	1.8063	101.19	100.7	102.5	0.0090332					106	41	5	0	0	0	1.043	1	12913	12913		30.504	1.3541	1	4694600	+		88945	22997	61853	61955	98999	98999					0.01889211863374385
VVKSLLTL	8	Unmodified	_VVKSLLTL_					0	0	0			REV__ENST00000574306.1_1_17:1616268-1616457:-|nuORF	REV__ENST00000574306.1_1_17:1616268-1616457:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	436.7747497558594	2	436.794404	871.574254	-0.96485	-0.00042144	1.1678	0.00051007	0.20291	8.863E-05	436.7960918872037	90.159	0.52621	90.004	89.695	90.222	-0.1552					19	12	2	0	0	0	0.027866	1	11048	11048		18.324	10.634	1	187670	+		88946	35444	61854	61956	99000	99000					0.13333020459367617
VVKSLLTL	8	Unmodified	_VVKSLLTL_					0	0	0			REV__ENST00000574306.1_1_17:1616268-1616457:-|nuORF	REV__ENST00000574306.1_1_17:1616268-1616457:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	436.794404	871.574254	0.67377	0.0002943	7.2587	0.0031705	7.9324	0.0034648	436.7976994350454	90.156	0.36427	90.017	89.792	90.156	-0.13824	0.0067149	0.0049122	NaN	18.324	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76433	+		88947	35444	61854	61956							0.13333020459367617
VVKSQALERC	10	Unmodified	_VVKSQALERC_					0	0	0			REV__nc|ENSG00000091592|Q9C000-3|NLRP1	REV__nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.32958984375	2	566.81079	1131.60703	-0.3591	-0.00020354	-0.59661	-0.00033816	-0.95571	-0.00054171	567.3101059705516	91.87	0.25754	91.879	91.701	91.959	0.0094147					8	5	2	0	0	0	0.03519	1	11573	11573		30.318	11.214	1	98128	+		88948	20912	61855	61957	99001	99001					0.04648859519920734
VVKSYAGAN	9	Unmodified	_VVKSYAGAN_					0	0	0			REV__nc|ENSG00000131238|P50897-2|PPT1	REV__nc|ENSG00000131238|P50897-2|PPT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	454.7442321777344	2	454.745442	907.476331	0.63166	0.00028725	-1.4842	-0.00067495	-0.85257	-0.0003877	454.744633969462	97.413	1.6833	97.422	96.795	98.478	0.0089111					83	38	3	0	0	0	0.85329	1	12402	12402		35.618	7.736	1	250170	+		88949	23196	61856	61958	99002	99002					0.01889211863363016
VVKTHLFTG	9	Unmodified	_VVKTHLFTG_					0	0	0			REV__ENSG00000196911|ENST00000368564|KPNA5	REV__ENSG00000196911|ENST00000368564|KPNA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.29022216796875	2	501.292559	1000.57057	0.31679	0.0001588	-4.3853	-0.0021983	-4.0685	-0.0020395	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.72875	1	10481	10481		44.117	4.864	1	1878500	+		88950	28235	61857	61959	99003	99003					0.07030350685533904
VVKTHLFTG	9	Unmodified	_VVKTHLFTG_					0	0	0			REV__ENSG00000196911|ENST00000368564|KPNA5	REV__ENSG00000196911|ENST00000368564|KPNA5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.29083251953125	2	501.292559	1000.57057	-0.51649	-0.00025891	-4.3022	-0.0021567	-4.8187	-0.0024156	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.87448	1	10667	10667		34.173	1.3601	1	8326900	+		88951	28235	61857	61959	99004	99004					0.07030350685533904
VVKTQSAPDL	10	Unmodified	_VVKTQSAPDL_					0	0	0			REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	530.2987060546875	2	529.298039	1056.58152	0.080836	4.2786E-05	2.0822	0.0011021	2.1631	0.0011449	529.2988060057479	105.04	0.32978	105.04	104.88	105.21	-0.0016022					19	11	2	0	0	0	0.03519	1	13424	13424		39.253	10.083	1	93182	+		88952	26911	61858	61960	99005	99005					0.0554970826913177
VVKTQSAPDL	10	Unmodified	_VVKTQSAPDL_					0	0	0			REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	529.298039	1056.58152	-0.38656	-0.0002046	1.7658	0.00093463	1.3792	0.00073002	529.2987923791062	104.96	0.30911	104.96	104.84	105.15	0	-0.0057077	-0.00085257	NaN	39.253	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103840	+		88953	26911	61858	61960							0.0554970826913177
VVKTQSAPDL	10	Unmodified	_VVKTQSAPDL_					0	0	0			REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	529.298039	1056.58152	-0.27806	-0.00014718	3.0515	0.0016152	2.7735	0.001468	529.2997244029551	104.96	0.27903	104.96	104.81	105.09	0.00096893	-0.0048402	0.00050852	NaN	39.253	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99333	+		88954	26911	61858	61960							0.0554970826913177
VVKTQSAPDL	10	Unmodified	_VVKTQSAPDL_					0	0	0			REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	529.298039	1056.58152	0.44803	0.00023714	0.28894	0.00015294	0.73697	0.00039008	529.2981580405951	105.06	0.36972	104.89	104.7	105.07	-0.16484	-0.067362	-0.002416	NaN	39.253	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72980	+		88955	26911	61858	61960							0.0554970826913177
VVKTVYSLQP	10	Unmodified	_VVKTVYSLQP_					0	0	0		ENST00000560673.1_1_15:40675453-40678696:+|nuORF;ENST00000561196.5_1_15:40675453-40676384:+|nuORF;nc|ENSG00000128944|Q9Y448-3|KNSTRN;nc|ENSG00000128944|Q9Y448-2|KNSTRN;KNSTRN|p.M282Yfs*18|1|0.06|ENSG00000128944|chr15:40393489-40393490|-/TATCAAC|frameshift_variant;ENSG00000128944|ENST00000249776|KNSTRN	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	ENST00000560673.1_1_15:40675453-40678696:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.8302612304688	2	567.331882	1132.64921	-1.2298	-0.00069771	-2.7215	-0.001544	-3.9513	-0.0022417	567.3302729706645	90.99	3.9009	90.835	89.393	93.294	-0.1552					364	92	6	0	0	0	1.0344	1	11037	11037		41.427	7.2541	1	17705000			88956	4323	61859	61961	99006	99006					0.0881915819995811
VVKVANVSL	9	Unmodified	_VVKVANVSL_					0	0	0		ENSG00000186468|ENST00000296674|RPS23;ENST00000429775.2_1_X:70182861-70183140:+|nuORF	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.2691955566406	2	464.794935	927.575317	0.54493	0.00025328	-0.43062	-0.00020015	0.11431	5.3131E-05	464.7946559994541	66.016	0.49908	66.046	65.737	66.237	0.030106					24	12	3	0	0	0	0.024405	1	7748	7748		35.618	0	1	575360			88957	9551	61860	61962	99007	99007					0.10863234828264012
VVKVFSLAVN	10	Unmodified	_VVKVFSLAVN_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3280639648438	2	538.329142	1074.64373	0.47679	0.00025667	-4.3339	-0.002333	-3.8571	-0.0020764	538.3267142871395	99.745	1.5095	99.621	99.145	100.65	-0.12459					154	45	7	0	0	0	1.118	1	12420	12420		30.318	5.7985	1	21461000			88958	4130	61861	61963	99008	99008					0.10939479408125408
VVKVFTAKSP	10	Unmodified	_VVKVFTAKSP_					0	0	0			REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	REV__nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3307495117188	2	538.329142	1074.64373	-0.74783	-0.00040258	-3.1387	-0.0016897	-3.8866	-0.0020923	538.3273466379247	99.829	1.4188	99.659	99.241	100.66	-0.17088					147	41	7	0	0	0	1.1265	1	12490	12490		24.519	1.4767	1	21993000	+		88959	21560	61862	61964	99009	99009					0.10939479408125408
VVKVGENVLPP	11	Unmodified	_VVKVGENVLPP_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8433227539062	2	575.845156	1149.67576	-0.26488	-0.00015253	-3.539	-0.0020379	-3.8039	-0.0021904	575.8429620623601	90.936	3.0548	90.923	89.842	92.897	-0.012383					262	73	4	0	0	0	0.95664	1	11596	11596		46.457	0	1	4946400			88960	3636	61863	61965	99010	99010					0.10690847091291289
VVKVGENVLPP	11	Unmodified	_VVKVGENVLPP_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8433227539062	2	575.845156	1149.67576	-0.59889	-0.00034487	-3.2038	-0.0018449	-3.8027	-0.0021898	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.99129	1	10941	10941		38.754	3.6016	1	2151700			88961	3636	61863	61965	99011	99011					0.10690847091291289
VVKVGENVLPP	11	Unmodified	_VVKVGENVLPP_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8429565429688	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	1.018	1	10972	10972		32.812	8.6097	1	1877500			88962	3636	61863	61965	99012	99012					0.10690847091291289
VVKVRIEYT	9	Unmodified	_VVKVRIEYT_					0	0	0			REV__nc|ENSG00000112335|O60493-2|SNX3	REV__nc|ENSG00000112335|O60493-2|SNX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.830078125	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	0.77768	2	11338	11253;11338		40.778	2.9666	1	4896800	+		88963	36571	61864	61966	99013;99014	99014					0.10094577919790026
VVKVRIEYT	9	Unmodified	_VVKVRIEYT_					0	0	0			REV__nc|ENSG00000112335|O60493-2|SNX3	REV__nc|ENSG00000112335|O60493-2|SNX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.830322265625	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	0.87448	1	10934	10934		34.173	0	1	6583300	+		88964	36571	61864	61966	99015	99015					0.10094577919790026
VVKVVKTLL	9	Unmodified	_VVKVVKTLL_					0	0	0		nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	nc|ENSG00000184313|Q68CQ1-1|MROH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2877197265625	2	499.852253	997.689953	-0.9041	-0.00045192	0.689	0.0003444	-0.2151	-0.00010752	499.8524889378505	55.291	0.45152	55.389	55.183	55.634	0.098015					17	11	2	0	0	0	0.024381	1	6035	6035		37.159	0	1	214450			88965	9326	61865	61967	99016	99016					0.19101544310228746
VVKWLLLL	8	Unmodified	_VVKWLLLL_					0	0	0			REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.3109130859375	2	492.336239	982.657924	-0.65858	-0.00032424	2.2703	0.0011178	1.6118	0.00079353	492.3389490197922	61.831	0.32615	61.893	61.622	61.948	0.062767					12	8	2	0	0	0	0.027866	1	7059	7059		35.201	19.564	1	192700	+		88966	22992	61866	61968	99017	99017					0.16590176627107667
VVKWNKDGRP	10	Unmodified	_VVKWNKDGRP_					0	0	0		nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	400.2303771972656	3	400.22789	1197.66184	1.79	0.00071642	3.9775	0.0015919	5.7675	0.0023083	400.2295883128697	21.979	1.5639	22.051	21.546	23.11	0.071487					115	32	6	0	0	0	0.83648	1	667	667		58.246	6.7185	1	6027300			88967	1699	61867	61969	99018	99018					0.0709161438285264
VVKYRVYT	8	Unmodified	_VVKYRVYT_					0	0	0		nc|ENSG00000293034|A6NFF2|NAP1L6P	nc|ENSG00000293034|A6NFF2|NAP1L6P	nc|ENSG00000293034|A6NFF2|NAP1L6P	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	514.29833984375	2	514.300384	1026.58622	-0.36934	-0.00018995	-3.7251	-0.0019158	-4.0944	-0.0021058	514.2984210471764	95.192	0.68699	95.192	94.875	95.562	0					46	15	4	0	0	0	1.0239	1	12119	12119		33.516	1.5607	1	1249400			88968	18841	61868	61970	99019	99019					0.07398637202550162
VVKYSVRFL	9	Unmodified	_VVKYSVRFL_					0	0	0		nc|ENSG00000151320|Q13023-2|AKAP6;ENST00000555950.5_1_14:33086197-33201884:+|nuORF	nc|ENSG00000151320|Q13023-2|AKAP6	nc|ENSG00000151320|Q13023-2|AKAP6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	555.8373413085938	2	555.837134	1109.65972	-0.16614	-9.2347E-05	1.9212	0.0010679	1.755	0.00097551	555.8375885197559	106.5	0.38173	106.5	106.27	106.65	-0.0013123					16	11	2	0	0	0	0.6504	1	13638	13638		49.442	8.8689	1	135400			88969	18382	61869	61971	99020	99020					0.10927185645050486
VVLALGPSGA	10	Unmodified	_VVLALGPSGA_					0	0	0			REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2659606933594	2	442.26601	882.517468	-0.029686	-1.3129E-05	-1.1289	-0.0004993	-1.1586	-0.00051242	442.2652998935689	39.191	1.2632	39.191	38.433	39.696	0					93	34	4	0	0	0	0.87795	1	3338	3338		55.504	11.127	1	11201000	+		88970	21373	61870	61972	99021	99021					0.07150972902843478
VVLALGPSGA	10	Unmodified	_VVLALGPSGA_					0	0	0			REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2662658691406	2	442.26601	882.517468	-0.51362	-0.00022716	-0.59909	-0.00026496	-1.1127	-0.00049211	442.26552280312796	39.247	1.2586	39.148	38.358	39.616	-0.098755					92	34	4	0	0	0	0.91051	1	3316	3316		53.351	2.016	1	10338000	+		88971	21373	61870	61972	99022	99022					0.07150972902843478
VVLALGPSGA	10	Unmodified	_VVLALGPSGA_					0	0	0			REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	REV__ENST00000437413.2_1_16:21498935-21531497:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2657775878906	2	442.26601	882.517468	-0.70766	-0.00031297	-0.32615	-0.00014425	-1.0338	-0.00045722	442.2656669175265	39.39	1.2996	39.414	38.608	39.908	0.023727					97	35	4	0	0	0	0.87795	2	3311	3300;3311		55.504	4.1688	1	10233000	+		88972	21373	61870	61972	99023;99024	99024					0.07150972902843478
VVLDSQKAIK	10	Unmodified	_VVLDSQKAIK_					0	0	0		ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	551.2529296875	2	550.837331	1099.66011	-0.83865	-0.00046196	-4.4196	-0.0024345	-5.2582	-0.0028964	550.8348311545966	21.428	0.29429	21.338	21.158	21.452	-0.090094					9	5	2	0	0	0	0.03519	1	659	659		28.081	13.217	1	14802			88973	14496	61871	61973	99025	99025					0.11426560574227551
VVLDSQKAIK	10	Unmodified	_VVLDSQKAIK_					0	0	0		ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.837331	1099.66011	-0.46851	-0.00025807	-2.2348	-0.001231	-2.7033	-0.0014891	550.8361291941548	21.287	0.2937	21.358	21.205	21.499	0.071487	-0.04839	0.00036735	NaN	21.686	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17267			88974	14496	61871	61973							0.11426560574227551
VVLDSQKAIK	10	Unmodified	_VVLDSQKAIK_					0	0	0		ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	550.837331	1099.66011	0.23432	0.00012907	-3.0241	-0.0016658	-2.7898	-0.0015367	550.8354951271399	21.551	0.42906	21.374	21.113	21.543	-0.17721	-0.033144	-0.00050218	NaN	21.686	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81609			88975	14496	61871	61973							0.11426560574227551
VVLDSQKAIK	10	Unmodified	_VVLDSQKAIK_					0	0	0		ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.837331	1099.66011	-0.15457	-8.5143E-05	-2.3524	-0.0012958	-2.5069	-0.0013809	550.8359729832628	21.731	0.48306	21.54	21.275	21.758	-0.19072	0.13303	0.00023783	NaN	21.686	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64721			88976	14496	61871	61973							0.11426560574227551
VVLDSQKAIK	10	Unmodified	_VVLDSQKAIK_					0	0	0		ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	ENST00000449259.1_1_2:65131264-65131681:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	550.837331	1099.66011	-1.1393	-0.00062757	-1.3745	-0.00075712	-2.5138	-0.0013847	550.836374527068	21.637	0.48483	21.425	21.216	21.701	-0.2128	0.0177	0.0013151	NaN	21.686	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86837			88977	14496	61871	61973							0.11426560574227551
VVLEITVPIT	10	Unmodified	_VVLEITVPIT_					0	0	0		ENST00000261569.11_1_5:66300649-66300712:+|nuORF	ENST00000261569.11_1_5:66300649-66300712:+|nuORF	ENST00000261569.11_1_5:66300649-66300712:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3374633789062	2	542.336633	1082.65871	-0.41128	-0.00022305	0.63321	0.00034341	0.22193	0.00012036	542.3369886071281	100.6	0.68037	100.6	100.35	101.03	0					24	15	2	0	0	0	1.0393	1	12861	12861		40.778	10.275	1	166680			88978	11476	61872	61974	99026	99026					0.12068926485449083
VVLESDVAL	9	Unmodified	_VVLESDVAL_					0	0	0			REV__nc|ENSG00000141564|Q8N122-3|RPTOR	REV__nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.76885986328125	2	472.768583	943.522613	0.094777	4.4808E-05	1.0036	0.00047447	1.0984	0.00051927	472.76868443977963	75.943	1.0603	75.943	75.659	76.719	0					41	26	3	0	0	0	0.60698	1	9362	9362		52.299	4.3836	1	1051600	+		88979	36725	61873	61975	99027	99027					0.04859231974796785
VVLGKQVL	8	Unmodified	_VVLGKQVL_					0	0	0		ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	ENSG00000185909|ENST00000332780|KLHDC8B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	428.28729248046875	2	428.286746	854.558939	1.224	0.00052422	-1.072	-0.00045914	0.15193	6.5072E-05	428.2861494408152	62.994	1.0832	63.048	62.719	63.803	0.054104					71	28	4	0	0	0	0.85409	1	7281	7281		54.765	0	1	5319800			88980	9490	61874	61976	99028	99028					0.12584153662180597
VVLHYLLL	8	Unmodified	_VVLHYLLL_					0	0	0			REV__ENSG00000075073|ENST00000373306|TACR2	REV__ENSG00000075073|ENST00000373306|TACR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.2719421386719	2	485.310221	968.605889	0.0032025	1.5542E-06	-4.4196	-0.0021449	-4.4164	-0.0021433	485.30781897576776	63.993	0.83244	63.741	63.372	64.204	-0.25141					41	22	3	0	0	0	0.027866	1	7475	7475		43.626	3.0534	1	700990	+		88981	20538	61875	61977	99029	99029					0.12033013213317645
VVLHYLLL	8	Unmodified	_VVLHYLLL_					0	0	0			REV__ENSG00000075073|ENST00000373306|TACR2	REV__ENSG00000075073|ENST00000373306|TACR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.3084716796875	2	485.310221	968.605889	-0.12676	-6.1517E-05	-4.2885	-0.0020813	-4.4153	-0.0021428	485.3079967023149	63.949	1.2884	63.721	63.366	64.654	-0.22773					80	32	4	0	0	0	0.69959	1	7276	7276		67.327	12.605	1	2430600	+		88982	20538	61875	61977	99030	99030					0.12033013213317645
VVLHYLLL	8	Unmodified	_VVLHYLLL_					0	0	0			REV__ENSG00000075073|ENST00000373306|TACR2	REV__ENSG00000075073|ENST00000373306|TACR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	485.3088073730469	2	485.310221	968.605889	-0.040976	-1.9886E-05	-4.3234	-0.0020982	-4.3644	-0.0021181	485.30797581422706	63.994	1.328	63.802	63.38	64.708	-0.19243					74	33	4	0	0	0	0.9599	1	7285	7285		43.626	1.2299	1	2437200	+		88983	20538	61875	61977	99031	99031					0.12033013213317645
VVLICRII	8	Unmodified	_VVLICRII_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2879638671875	2	464.804248	927.593944	-0.14598	-6.7853E-05	-3.1863	-0.001481	-3.3323	-0.0015489	464.8025857017725	76.392	0.68741	76.124	75.779	76.467	-0.26806					25	16	2	0	0	0	0.027866	1	9034	9034		35.201	0	1	186590	+		88984	36945	61876	61978	99032	99032					0.1272507319849865
VVLICRII	8	Unmodified	_VVLICRII_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.2879943847656	2	464.804248	927.593944	-0.042386	-1.9701E-05	-3.4454	-0.0016014	-3.4877	-0.0016211	464.80253995696864	76.123	0.64301	75.955	75.666	76.309	-0.16854					23	15	2	0	0	0	0.027866	1	9016	9016		54.765	12.29	1	117500	+		88985	36945	61876	61978	99033	99033					0.1272507319849865
VVLILLSGLS	10	Unmodified	_VVLILLSGLS_					0	0	0			REV__nc|ENSG00000141627|Q7RTS9-2|DYM	REV__nc|ENSG00000141627|Q7RTS9-2|DYM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	507.7408752441406	2	507.333893	1012.65323	-1.0611	-0.00053833	-3.3434	-0.0016962	-4.4045	-0.0022345	507.3331586670671	51.621	0.19759	51.346	51.197	51.395	-0.27436					6	4	2	0	0	0	0.03519	1	5298	5298		53.351	2.016	1	36291	+		88986	24112	61877	61979	99034	99034					0.14741247693655168
VVLITMPIL	9	Unmodified	_VVLITMPIL_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	499.73809814453125	2	499.819564	997.624575	-0.18179	-9.0863E-05	3.6335	0.0018161	3.4517	0.0017252	499.82119283030306	33.466	0.44219	33.235	32.997	33.439	-0.23107					26	10	3	0	0	0	0.024517	1	2416	2416		26.796	12.132	1	286240	+		88987	21433	61878	61980	99035	99035					0.1256680679287001
VVLITMPIL	9	Unmodified	_VVLITMPIL_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.73822021484375	2	499.819564	997.624575	-0.3791	-0.00018948	3.7709	0.0018848	3.3918	0.0016953	499.8212925409155	33.466	0.38779	33.266	33.016	33.404	-0.20019					16	9	2	0	0	0	0.024517	1	2394	2394		19.36	0	1	350140	+		88988	21433	61878	61980	99036	99036					0.1256680679287001
VVLITMPIL	9	Unmodified	_VVLITMPIL_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	499.819564	997.624575	0.52745	0.00026363	2.4321	0.0012156	2.9596	0.0014792	499.8206848861397	33.321	0.78498	33.378	33.105	33.89	0.056568	0.093718	-0.00080888	NaN	19.36	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1191300	+		88989	21433	61878	61980							0.1256680679287001
VVLKIRPM	8	Unmodified	_VVLKIRPM_					0	0	0			REV__ENST00000440965.1_1_2:202003207-202003609:-|nuORF	REV__ENST00000440965.1_1_2:202003207-202003609:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	477.77764892578125	2	478.309698	954.604843	-0.10319	-4.9359E-05	-1.9136	-0.00091531	-2.0168	-0.00096467	478.30908328133495	27.347	0.32994	27.334	27.134	27.464	-0.012983					9	8	2	0	0	0	0.027866	1	1489	1489		20.482	12.792	1	76219	+		88990	32536	61879	61981	99037	99037					0.12572475572767416
VVLLAMLVE	9	Unmodified	_VVLLAMLVE_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.23565673828125	2	493.801371	985.58819	-0.033988	-1.6783E-05	3.0873	0.0015245	3.0533	0.0015077	493.8027706804664	22.707	0.41903	22.518	22.327	22.746	-0.18894					12	8	2	0	0	0	0.024506	1	822	822		30.504	0	1	42435			88991	7998	61880	61982	99038	99038					0.09481929896162455
VVLLLKPGLLL	11	Unmodified	_VVLLLKPGLLL_					0	0	0			REV__nc|ENSG00000101307|O00241-2|SIRPB1	REV__nc|ENSG00000101307|O00241-2|SIRPB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	589.3431396484375	2	589.41776	1176.82097	-2.0556	-0.0012116	-3.2229	-0.0018996	-5.2785	-0.0031112	589.4152198726332	92.837	0.17044	92.694	92.612	92.782	-0.14356					5	3	2	0	0	0	0.024763	1	11401	11401		15.642	0	1	20787	+		88992	21214	61881	61983	99039	99039					0.2396293495826285
VVLLLLPK	8	Unmodified	_VVLLLLPK_					0	0	0			REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	447.3317565917969	2	447.822964	893.631375	0.64794	0.00029016	-4.3686	-0.0019564	-3.7207	-0.0016662	447.8212263583529	108.48	0.3896	108.33	108.05	108.44	-0.15438					29	20	2	0	0	0	0.027866	1	13406	13406		1.3276	0	1	1203300	+		88993	35910	61882	61984	99040	99040					0.18030487735734368
VVLLLLPK	8	Unmodified	_VVLLLLPK_					0	0	0			REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	447.822964	893.631375	0.052921	2.3699E-05	-3.3253	-0.0014891	-3.2724	-0.0014654	447.82151442411714	108.51	0.34334	108.51	108.25	108.6	0.004776	0.12333	-0.00012615	NaN	1.3276	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1322400	+		88994	35910	61882	61984							0.18030487735734368
VVLLLLPK	8	Unmodified	_VVLLLLPK_					0	0	0			REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	447.822964	893.631375	-1.2611	-0.00056474	-2.2639	-0.0010138	-3.525	-0.0015786	447.82206690851257	108.46	0.38933	108.32	108.07	108.46	-0.13649	-0.063653	0.00082447	NaN	1.3276	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1224800	+		88995	35910	61882	61984							0.18030487735734368
VVLLLPET	8	Unmodified	_VVLLLPET_					0	0	0		ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	442.2662658691406	2	442.278586	882.54262	-0.44975	-0.00019892	-4.0876	-0.0018079	-4.5373	-0.0020068	442.2758505779056	39.126	0.14028	39.027	38.914	39.054	-0.098751					5	3	2	0	0	0	0.027866	1	3316	3316		54.765	0	1	94345			88996	9899	61883	61985	99041	99041					0.09665027705409557
VVLLPVLY	8	Unmodified	_VVLLPVLY_					0	0	0			REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	REV__FZD3|p.E529Nfs*9|1|0.23|ENSG00000104290|chr8:28555768-28555768|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	458.7641296386719	2	458.299322	914.584091	-0.0036425	-1.6694E-06	1.8709	0.00085742	1.8672	0.00085575	458.3001063102212	19.502	0.39155	19.383	19.2	19.591	-0.11872					9	7	2	0	0	0	0.027866	1	428	428		16.705	6.5202	1	25662	+		88997	36053	61884	61986	99042	99042					0.12338208464746003
VVLNRILGE	9	Unmodified	_VVLNRILGE_					0	0	0		ENSG00000120899|ENST00000346049|PTK2B;nc|ENSG00000120899|Q14289-2|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF	ENSG00000120899|ENST00000346049|PTK2B	ENSG00000120899|ENST00000346049|PTK2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	507.7243957519531	2	506.811116	1011.60768	1.0398	0.00052699	-1.1683	-0.00059211	-0.12849	-6.5121E-05	506.8104212621721	17.984	0.59398	17.827	17.505	18.099	-0.15627					26	9	4	0	0	0	0.024541	1	233	233		11.511	0	1	565420			88998	3845	61885	61987	99043	99043					0.10234022231293238
VVLPKMLKYTM	11	Unmodified	_VVLPKMLKYTM_					0	0	0			REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	REV__DNHD1|p.R3916Afs*8|1|0.16|ENSG00000179532|chr11:6567253-6567253|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	440.7663879394531	3	441.590672	1321.75019	-0.45866	-0.00020254	0.92586	0.00040885	0.4672	0.00020631	441.5910735016153	56.075	0.29177	56.173	56.067	56.359	0.097893					10	7	2	0	0	0	0.024792	1	6152	6152		18.531	4.445	1	70702	+		88999	19695	61886	61988	99044	99044					0.10218150586774755
VVLRNDEF	8	Unmodified	_VVLRNDEF_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	496.2654113769531	2	496.263999	990.513445	0.43634	0.00021654	2.3097	0.0011462	2.746	0.0013627	496.2650620795505	37.339	2.9423	37.339	35.96	38.902	0					208	81	5	0	0	0	0.78609	1	3072	3072		60.294	1.512	1	9375100	+		89000	23409	61887	61989	99045	99045					0.01780883409139733
VVLRRVVSL	9	Unmodified	_VVLRRVVSL_					0	0	0		ENST00000306897.8_1_17:79991747-79991837:+|nuORF	ENST00000306897.8_1_17:79991747-79991837:+|nuORF	ENST00000306897.8_1_17:79991747-79991837:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.6572875976562	2	520.850576	1039.6866	-0.71032	-0.00036997	0.7222	0.00037616	0.011884	6.19E-06	520.8508362506952	54.889	0.52394	54.743	54.533	55.057	-0.14609					30	13	3	0	0	0	0.024541	1	5888	5888		9.7057	4.1478	1	538990			89001	12005	61888	61990	99046	99046					0.16834294256227622
VVLRVGSAADL	11	Unmodified	_VVLRVGSAADL_					0	0	0		ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	550.27587890625	2	550.327131	1098.63971	-1.32	-0.00072646	0.58839	0.00032381	-0.73165	-0.00040265	550.3272351600249	51.017	0.41142	51.104	50.891	51.302	0.087006					15	10	2	0	0	0	0.024778	1	5306	5306		62.107	1.9892	1	70830			89002	12474	61889	61991	99047	99047					0.09433389914420331
VVLRVGSAADL	11	Unmodified	_VVLRVGSAADL_					0	0	0		ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.327131	1098.63971	-1.3783	-0.00075852	-0.43129	-0.00023735	-1.8096	-0.00099587	550.8300056027504	51.748	0.11092	51.479	51.4	51.511	-0.26904	0.21565	-0.00017462	NaN	52.937	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51909			89003	12474	61889	61991							0.09433389914420331
VVLSERLQAL	10	Unmodified	_VVLSERLQAL_					0	0	0		nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000460623.5_1_8:144657010-144657124:-|nuORF;ENST00000529179.1_1_8:144657010-144657269:-|nuORF;ENST00000464332.5_1_8:144657010-144658430:-|nuORF	nc|ENSG00000147813|Q6XQN6-3|NAPRT	nc|ENSG00000147813|Q6XQN6-3|NAPRT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	564.7489013671875	2	564.342781	1126.67101	-0.16141	-9.1089E-05	-0.36753	-0.00020741	-0.52894	-0.0002985	564.3424542541926	55.91	0.39105	55.91	55.679	56.07	0					17	10	2	0	0	0	0.03519	1	6173	6173		34.173	0	1	225250			89004	5994	61890	61992	99048	99048					0.11273962948507688
VVLSERLQAL	10	Unmodified	_VVLSERLQAL_					0	0	0		nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000460623.5_1_8:144657010-144657124:-|nuORF;ENST00000529179.1_1_8:144657010-144657269:-|nuORF;ENST00000464332.5_1_8:144657010-144658430:-|nuORF	nc|ENSG00000147813|Q6XQN6-3|NAPRT	nc|ENSG00000147813|Q6XQN6-3|NAPRT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.749267578125	2	564.342781	1126.67101	-0.42356	-0.00023903	-0.31875	-0.00017988	-0.74231	-0.00041892	564.3425871553981	56.025	0.40356	55.869	55.591	55.995	-0.15601					16	10	2	0	0	0	0.03519	1	6161	6161		34.173	1.3601	1	248750			89005	5994	61890	61992	99049	99049					0.11273962948507688
VVLSQVCLSSM	11	Oxidation (M)	_VVLSQVCLSSM(Oxidation (M))_		VVLSQVCLSSM(1)		VVLSQVCLSSM(51)	0	0	1		ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	591.2991943359375	2	591.298867	1180.58318	-0.81578	-0.00048237	1.0509	0.00062138	0.2351	0.00013902	591.2994187511589	27.403	0.63152	27.246	26.974	27.605	-0.15664					49	14	5	0	0	0	0.90725	1	1499	1499		51.193	11.94	1	2347500			89006	5128	61891	61993	99050	99050		210			0.00011257971232225827
VVLTDPVNL	9	Unmodified	_VVLTDPVNL_					0	0	0		nc|ENSG00000244474|P22310-2|UGT1A4;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000244474|P22310-2|UGT1A4;nc|ENSG00000288702|P35503-3|UGT1A3	nc|ENSG00000244474|P22310-2|UGT1A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	485.283447265625	2	485.2844	968.554247	-0.47049	-0.00022832	-2.9719	-0.0014422	-3.4424	-0.0016705	485.28305550469815	21.616	1.7483	21.526	21.158	22.906	-0.090094					100	36	5	0	0	0	0.78069	1	657	657		40.573	1.3198	1	9118900			89007	10821;18823	61892	61994	99051	99051					0.06871224728752168
VVLTMKLH	8	Unmodified	_VVLTMKLH_					0	0	0		HORMAD2|p.T255Pfs*11|1|0.15|ENSG00000176635|chr22:30122156-30122157|-/CCCTTCTT|frameshift_variant;ENSG00000176635|ENST00000336726|HORMAD2	HORMAD2|p.T255Pfs*11|1|0.15|ENSG00000176635|chr22:30122156-30122157|-/CCCTTCTT|frameshift_variant	HORMAD2|p.T255Pfs*11|1|0.15|ENSG00000176635|chr22:30122156-30122157|-/CCCTTCTT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.7837219238281	2	470.786056	939.557558	-0.74323	-0.0003499	-2.8557	-0.0013444	-3.5989	-0.0016943	470.78457770753676	46.722	1.9491	46.528	46.165	48.114	-0.19387					124	53	4	0	0	0	0.91239	1	4504	4504		50.025	7.5501	1	13054000			89008	8656	61893	61995	99052	99052					0.0853619630177036
VVLVELVI	8	Unmodified	_VVLVELVI_					0	0	0			REV__ENST00000477995.1_1_6:170176000-170181606:+|nuORF	REV__ENST00000477995.1_1_6:170176000-170181606:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	442.2663269042969	2	442.296779	882.579005	-0.73766	-0.00032626	-3.192	-0.0014118	-3.9297	-0.0017381	442.2952703969086	39.101	0.31996	39.125	38.993	39.313	0.023727					14	8	2	0	0	0	0.027866	1	3300	3300		35.201	0	1	140290	+		89009	23072	61894	61996	99053	99053					0.13301904602133163
VVLVFIFLNCV	11	Unmodified	_VVLVFIFLNCV_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3685913085938	2	633.369952	1264.72535	0.73412	0.00046497	-1.5694	-0.000994	-0.83527	-0.00052903	633.3688895035135	105.72	0.40207	105.72	105.46	105.86	-0.0013123					30	14	3	0	0	0	1.0442	1	13532	13532		26.693	4.1133	1	161470			89010	9891	61895	61997	99054	99054					0.10357838775735217
VVLVLIVLS	9	Unmodified	_VVLVLIVLS_					0	0	0			REV__ENSG00000179934|ENST00000326306|CCR8	REV__ENSG00000179934|ENST00000326306|CCR8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.8335266113281	2	477.833529	953.652505	-0.88629	-0.0004235	1.2692	0.00060646	0.3829	0.00018296	477.83392867359913	105.5	0.89895	105.37	105.26	106.16	-0.13099					63	33	3	0	0	0	1.0101	1	13160	13160		18.324	0	1	1015200	+		89011	27304	61896	61998	99055	99055					0.17382453044604063
VVLYFQLKAQ	10	Unmodified	_VVLYFQLKAQ_					0	0	0			REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	404.5706787109375	3	403.572775	1207.69649	-0.0028431	-1.1474E-06	-2.7999	-0.0011299	-2.8027	-0.0011311	403.57156813420056	30.207	0.32722	30.207	30.057	30.384	0					12	7	2	0	0	0	0.03519	1	1909	1909		10.587	0	1	78238	+		89012	29048	61897	61999	99056	99056					0.10095437470931756
VVLYHLIN	8	Unmodified	_VVLYHLIN_					0	0	0		ENST00000476873.5_1_1:153586744-153586783:-|nuORF	ENST00000476873.5_1_1:153586744-153586783:-|nuORF	ENST00000476873.5_1_1:153586744-153586783:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	485.3084716796875	2	485.789653	969.564752	-0.1805	-8.7687E-05	-3.8864	-0.001888	-4.0669	-0.0019757	485.78754955050476	64.006	0.3647	63.779	63.624	63.988	-0.22773					12	8	2	0	0	0	0.027866	1	7276	7276		46.766	26.77	1	102620			89013	15101	61898	62000	99057	99057					0.07875252173835179
VVMAAGYKKIK	11	Unmodified	_VVMAAGYKKIK_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2472229003906	3	403.245893	1206.71585	2.4029	0.00096894	0.028356	1.1434E-05	2.4312	0.00098038	403.2458644662001	103.38	1.2051	103.38	102.9	104.11	-0.0046005					76	28	5	0	0	0	1.0563	1	13199	13199		23.378	2.3457	1	2231700	+		89014	22316	61899	62001	99058	99058					0.12076070490184065
VVMAQSHW	8	Unmodified	_VVMAQSHW_					0	0	0		ENSG00000173402|ENST00000308775|DAG1;DAG1|p.I773Sfs*70|1|0.27|ENSG00000173402|chr3:49532828-49532828|A/-|frameshift_variant;DAG1|p.A355Efs*82|1|0.25|ENSG00000173402|chr3:49531575-49531585|CTCCTCCAGTC/-|frameshift_variant	ENSG00000173402|ENST00000308775|DAG1	ENSG00000173402|ENST00000308775|DAG1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	479.234187	956.453822	-0.22655	-0.00010857	3.2237	0.0015449	2.9971	0.0014363	479.2355733056151	26.216	0.70517	26.193	25.864	26.569	-0.023088					29	16	2	0	0	0	0.027866	1	1262	1262		52.299	34.934	1	450900			89015	621	61900	62002	99059	99059					-0.026147108058808044
VVMDVLQTD	9	Unmodified	_VVMDVLQTD_					0	0	0		ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2;CASP8AP2|p.P876Ifs*10|1|0.5|ENSG00000118412|chr6:89864334-89864335|-/ATTATTG|frameshift_variant	ENSG00000118412|ENST00000551025|CASP8AP2	ENSG00000118412|ENST00000551025|CASP8AP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	510.2593688964844	2	510.257525	1018.5005	-1.2719	-0.000649	4.4793	0.0022856	3.2074	0.0016366	510.25988118619506	24.603	1.1813	24.556	24.044	25.225	-0.047148					62	26	5	0	0	0	0.33245	1	1075	1075		71.296	2.4496	1	2174400			89016	3681	61901	62003	99060	99060					-0.008013157652726477
VVMSTLPTV	9	Unmodified	_VVMSTLPTV_					0	0	0			REV__CON__Q0V8M9;REV__ENST00000468472.1_1_3:52853923-52864679:-|nuORF;REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.7694091796875	2	473.767529	945.520504	0.16995	8.0516E-05	3.6903	0.0017484	3.8603	0.0018289	473.7692480263877	22.495	0.65669	22.42	22.082	22.739	-0.075296					25	13	2	0	0	0	0.31247	1	776	776		73.975	10.668	1	1460700	+	+	89017	25424;19565;20209	61902	62004	99061	99061					0.04556479965356175
VVMTHYHSL	9	Unmodified	_VVMTHYHSL_					0	0	0			REV__MTOR|p.H967Y|1|0.35|ENSG00000198793|chr1:11228799-11228799|G/A|missense_variant	REV__MTOR|p.H967Y|1|0.35|ENSG00000198793|chr1:11228799-11228799|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	543.813232421875	2	543.773677	1085.5328	-0.99473	-0.00054091	4.1713	0.0022683	3.1766	0.0017274	543.7763398756499	93.788	1.5411	93.785	93.454	94.995	-0.0024643					43	36	2	0	0	0	0.024325	1	11841	11841		50.025	17.212	1	271510	+		89018	36401	61903	62005	99062	99062					-0.006544835716113084
VVNGIITL	8	Unmodified	_VVNGIITL_					0	0	0			REV__OR11L1|p.R234Lfs*36|1|0.24|ENSG00000197591|chr1:247841196-247841197|-/A|frameshift_variant	REV__OR11L1|p.R234Lfs*36|1|0.24|ENSG00000197591|chr1:247841196-247841197|-/A|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.76123046875	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	0.95417	1	11038	11038		44.531	0	1	53595000	+		89019	28324	61904	62006	99063	99063					0.09099874391188223
VVNIPAAEL	9	Unmodified	_VVNIPAAEL_					0	0	0		ENST00000547016.1_1_12:80082236-80083760:-|nuORF	ENST00000547016.1_1_12:80082236-80083760:-|nuORF	ENST00000547016.1_1_12:80082236-80083760:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.2818298339844	2	463.271293	924.528032	-0.3545	-0.00016423	1.0699	0.00049565	0.7154	0.00033142	463.2718153934296	75.788	0.64465	75.544	75.266	75.911	-0.24455					28	17	2	0	0	0	0.024541	1	9247	9247		24.203	3.7209	1	367100			89020	16518	61905	62007	99064	99064					0.06274955557273643
VVNKNERVLCN	11	Unmodified	_VVNKNERVLCN_					0	0	0			REV__nc|ENSG00000106683|P53667-4|LIMK1	REV__nc|ENSG00000106683|P53667-4|LIMK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	644.3497314453125	2	644.345529	1286.6765	2.0421	0.0013158	4.478	0.0028854	6.5201	0.0042012	644.3482775431247	110.37	0.78791	110.37	110.02	110.81	0					74	23	5	0	0	0	1.0183	1	14014	14014		32.751	7.1765	1	637790	+		89021	21635	61906	62008	99065	99065					0.04463318468697253
VVNLTGMLN	9	Unmodified	_VVNLTGMLN_					0	0	0		ENST00000492022.1_1_19:58727564-58727924:+|nuORF	ENST00000492022.1_1_19:58727564-58727924:+|nuORF	ENST00000492022.1_1_19:58727564-58727924:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	480.7615661621094	2	480.762778	959.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.569	1	74.306	73.806	74.806	-0.26326								0	0	0	0.12136	1	8801	8801		87.696	5.3914	1				89022	15473	61907	62009	99066	99066					0.029627116798337738
VVNLTKIKF	9	Unmodified	_VVNLTKIKF_					0	0	0			REV__ENST00000609975.1_1_2:96191991-96192402:-|nuORF	REV__ENST00000609975.1_1_2:96191991-96192402:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.8170166015625	2	531.33951	1060.66447	-0.73986	-0.00039312	4.3652	0.0023194	3.6253	0.0019263	531.3416975733029	89.134	0.96561	88.971	88.722	89.688	-0.1626					45	22	3	0	0	0	0.024527	1	10846	10846		18.262	0	1	601100	+		89023	35991	61908	62010	99067	99067					0.13656069787793967
VVNMADKKI	9	Unmodified	_VVNMADKKI_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.3055114746094	2	509.291702	1016.56885	-0.46301	-0.00023581	3.3616	0.001712	2.8985	0.0014762	509.2932927850516	21.973	0.52503	21.782	21.564	22.089	-0.19072					16	10	2	0	0	0	0.023635	1	766	766		66.429	13.493	1	75899			89024	5135	61909	62011	99068	99068					0.06122973605260995
VVNPQPQQW	9	Unmodified	_VVNPQPQQW_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	548.2820434570312	2	548.282723	1094.55089	-0.75303	-0.00041287	0.12949	7.0998E-05	-0.62354	-0.00034188	548.2828218729701	54.336	1.1941	54.2	53.837	55.032	-0.13617					76	33	3	0	0	0	0.10076	4	5771	5761;5771;5784;5798		110.34	29.641	1	8867800			89025	8347	61910	62012	99069;99070;99071;99072	99070					0.00739974674752375
VVNPQPQQW	9	Unmodified	_VVNPQPQQW_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	548.282470703125	2	548.282723	1094.55089	-0.11971	-6.5635E-05	-0.51409	-0.00028187	-0.6338	-0.0003475	548.2824687602848	54.487	1.1548	54.242	53.862	55.017	-0.2453					82	33	4	0	0	0	0.06122	4	5800	5776;5788;5800;5812		124.59	42.354	1	8626600			89026	8347	61910	62012	99073;99074;99075;99076	99075					0.00739974674752375
VVNPQPQQW	9	Unmodified	_VVNPQPQQW_					0	0	0		ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	ENSG00000173166|ENST00000319170|RAPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	548.2818603515625	2	548.282723	1094.55089	0.28808	0.00015795	-2.0936	-0.0011479	-1.8055	-0.00098993	548.2822680383687	54.416	0.95034	54.21	53.881	54.831	-0.20613					104	25	7	0	0	0	0.049585	4	5764	5755;5764;5775;5788		128.86	43.7	1	7544200			89027	8347	61910	62012	99077;99078;99079;99080	99078					0.00739974674752375
VVNRWVIN	8	Unmodified	_VVNRWVIN_					0	0	0			REV__nc|ENSG00000145284|Q86SK9-2|SCD5	REV__nc|ENSG00000145284|Q86SK9-2|SCD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.2079162597656	2	500.290351	998.566149	-0.071496	-3.5769E-05	-1.1751	-0.00058791	-1.2466	-0.00062368	500.29017673885016	42.971	0.78833	42.859	42.464	43.253	-0.11253					61	20	5	0	0	0	0.027866	1	3896	3896		12.207	0	1	1986700	+		89028	24395	61911	62013	99081	99081					0.06680886262608965
VVNSSKIII	9	Unmodified	_VVNSSKIII_					0	0	0			REV__ENSG00000146918|ENST00000356309|NCAPG2	REV__ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7839050292969	2	486.808042	971.601532	0.41345	0.00020127	-2.7413	-0.0013345	-2.3278	-0.0011332	486.80763429445284	100.94	0.38379	100.81	100.66	101.04	-0.13156					11	9	2	0	0	0	0.024427	1	12520	12520		51.335	12.314	1	32387	+		89029	24521	61912	62014	99082	99082					0.11459503999765275
VVNVADGAKL	10	Unmodified	_VVNVADGAKL_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.2893981933594	2	493.287474	984.560395	-0.33192	-0.00016373	-0.16398	-8.0892E-05	-0.49591	-0.00024463	493.28736262475627	22.276	1.2216	22.2	21.745	22.966	-0.075296					70	25	5	0	0	0	0.96822	1	779	779		49.536	1.8787	1	3385700	+		89030	23261	61913	62015	99083	99083					0.06749742960278127
VVNVNPTNIR	10	Unmodified	_VVNVNPTNIR_					0	0	0		nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;TNIK|p.T1272Rfs*20|1|0.11|ENSG00000154310|chr3:171066611-171066620|ACATCCTTAG/-|frameshift_variant	nc|ENSG00000154310|Q9UKE5-6|TNIK	nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.320556640625	2	563.32238	1124.63021	0.19019	0.00010714	-3.8009	-0.0021411	-3.6107	-0.002034	563.3196736924358	103.68	0.86414	103.51	103.28	104.14	-0.16791					34	21	3	0	0	0	1.0002	1	12887	12887		45.972	10.772	1	107470			89031	6402	61914	62016	99084	99084					0.07287621628870511
VVNVVPAPSAN	11	Unmodified	_VVNVVPAPSAN_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.7988891601562	2	533.798206	1065.58186	-0.67123	-0.0003583	2.6487	0.0014139	1.9775	0.0010556	533.7993821602664	57.335	0.60042	57.335	57.003	57.603	0					47	15	4	0	0	0	0.64701	1	6461	6461		66.962	1.4965	1	3623100			89032	3671	61915	62017	99085	99085					0.051691279890064834
VVNYHMIL	8	Unmodified	_VVNYHMIL_					0	0	0		nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3;ENST00000478065.5_1_1:1237366-1238730:-|nuORF;ENST00000479108.5_1_1:1237366-1243195:-|nuORF;ENST00000472541.5_1_1:1235057-1244982:-|nuORF	nc|ENSG00000131584|Q96P50-1|ACAP3	nc|ENSG00000131584|Q96P50-1|ACAP3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.323486328125	2	494.767863	987.521173	1.4875	0.00073599	2.2638	0.0011201	3.7513	0.001856	494.769143365286	63.635	0.50767	63.635	63.447	63.954	0					24	13	2	0	0	0	0.027866	1	7506	7506		20.482	3.7769	1	318220			89033	4535	61916	62018	99086	99086					0.026913194050735
VVPEILRKSL	10	Unmodified	_VVPEILRKSL_					0	0	0		nc|ENSG00000186314|Q8N945|PRELID2	nc|ENSG00000186314|Q8N945|PRELID2	nc|ENSG00000186314|Q8N945|PRELID2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	577.3661499023438	2	577.368798	1152.72304	-1.0688	-0.00061712	-2.9126	-0.0016817	-3.9815	-0.0022988	577.3670156537873	101.16	0.99826	101.16	100.82	101.82	0					57	22	4	0	0	0	0.85955	1	12945	12945		56.721	17.468	1	1213500			89034	18596	61917	62019	99087	99087					0.15279126362293027
VVPEILRKSL	10	Unmodified	_VVPEILRKSL_					0	0	0		nc|ENSG00000186314|Q8N945|PRELID2	nc|ENSG00000186314|Q8N945|PRELID2	nc|ENSG00000186314|Q8N945|PRELID2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	577.368798	1152.72304	-0.32694	-0.00018876	-3.4688	-0.0020028	-3.7958	-0.0021916	577.3666744516432	101.1	0.73207	101.11	100.83	101.56	0.0090332	-0.016266	0.0002145	NaN	56.721	51	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370400			89035	18596	61917	62019							0.15279126362293027
VVPFLIMGV	9	Unmodified	_VVPFLIMGV_					0	0	0		ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	ENSG00000129048|ENST00000249887|ACKR4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.79052734375	2	487.790807	973.56706	0.34339	0.0001675	0.11584	5.6504E-05	0.45923	0.00022401	487.79092235400344	96.371	1.7522	96.235	95.853	97.605	-0.1367					89	39	4	0	0	0	0.80342	1	11917	11917		39.021	5.5285	1	805910			89036	4328	61918	62020	99088	99088					0.07921964587319508
VVPGLGGPGE	10	Unmodified	_VVPGLGGPGE_					0	0	0		ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	ENSG00000106031|ENST00000649031|HOXA13	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	441.75579833984375	2	441.239993	880.465432	-0.0024969	-1.1017E-06	0.71301	0.00031461	0.71052	0.00031351	441.2399597511564	45.221	0.3749	45.265	45.002	45.377	0.043877					22	10	3	0	0	0	0.03519	1	4310	4310		21.96	0	1	249830			89037	2751	61919	62021	99089	99089					0.02041809489105617
VVPHGFTINP	10	Unmodified	_VVPHGFTINP_					0	0	0			REV__ENSG00000235376|ENST00000441178|RPEL1	REV__ENSG00000235376|ENST00000441178|RPEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.8162231445312	2	540.795466	1079.57638	0.17386	9.4024E-05	-4.1542	-0.0022466	-3.9803	-0.0021525	540.7930906432663	40.884	0.50156	40.76	40.441	40.943	-0.12318					20	12	2	0	0	0	0.03519	1	3621	3621		49.442	7.0454	1	320380	+		89038	28927	61920	62022	99090	99090					0.03977449197191163
VVPIPLTAVV	10	Unmodified	_VVPIPLTAVV_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	504.2964172363281	2	504.328611	1006.64267	-0.058699	-2.9604E-05	2.6274	0.0013251	2.5687	0.0012955	504.3301003510759	18.85	0.14637	18.719	18.645	18.792	-0.13147					4	2	2	0	0	0	0.03519	1	331	331		10.265	3.9526	1	9355.4	+		89039	28264	61921	62023	99091	99091					0.13961265039222326
VVPQEQQWTE	10	Unmodified	_VVPQEQQWTE_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	414.5596618652344	3	415.203299	1242.58807	-0.36241	-0.00015047	-1.0449	-0.00043386	-1.4073	-0.00058433	415.2030288790645	26.558	0.20509	26.39	26.301	26.506	-0.16816					4	2	2	0	0	0	0.03519	1	1384	1384		43.651	0	1	29556	+		89040	20533	61922	62024	99092	99092					-0.023523985701331185
VVPRPGLH	8	Unmodified	_VVPRPGLH_					0	0	0			REV__ENSG00000197408|ENST00000324071|CYP2B6	REV__ENSG00000197408|ENST00000324071|CYP2B6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	437.7535400390625	2	437.766512	873.518471	-0.0035086	-1.5359E-06	3.5187	0.0015404	3.5152	0.0015388	437.7679919469202	49.731	0.11237	49.451	49.397	49.51	-0.27977					4	2	2	0	0	0	0.027866	1	5008	5008		15.636	5.4514	1	104650	+		89041	28300	61923	62025	99093	99093					0.07665232062413452
VVPSRVWCI	9	Unmodified	_VVPSRVWCI_					0	0	0			REV__ENSG00000159618|ENST00000349457|ADGRG5	REV__ENSG00000159618|ENST00000349457|ADGRG5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7787475585938	2	529.794412	1057.57427	-0.57422	-0.00030422	2.6908	0.0014256	2.1166	0.0011214	529.7961280948948	63.277	1.0588	63.093	62.83	63.889	-0.18386					47	26	3	0	0	0	0.024386	1	7216	7216		25.45	0	1	1113700	+		89042	25265	61924	62026	99094	99094					0.04778697187725811
VVPTFIRFFL	10	Unmodified	_VVPTFIRFFL_					0	0	0			REV__ENSG00000172139|ENST00000305815|SLC9C1	REV__ENSG00000172139|ENST00000305815|SLC9C1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8693237304688	2	619.868434	1237.72232	-0.53181	-0.00032965	2.2507	0.0013951	1.7188	0.0010655	619.869574942614	104.77	0.53139	104.76	104.51	105.05	-0.0015945					37	16	3	0	0	0	1.1265	1	13366	13366		24.519	1.9395	1	203150	+		89043	26636	61925	62027	99095	99095					0.11296331713219843
VVPTRPRGPFL	11	Unmodified	_VVPTRPRGPFL_					0	0	0			REV__ENST00000471964.5_1_3:15674116-15674227:+|nuORF	REV__ENST00000471964.5_1_3:15674116-15674227:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8700561523438	2	619.87204	1237.72953	-0.53181	-0.00032965	-3.5656	-0.0022102	-4.0974	-0.0025399	619.869574942614	104.77	0.53139	104.76	104.51	105.05	-0.0015945					37	16	3	0	0	0	1.0292	1	13374	13374		30.318	1.1682	1	203150	+		89044	33192	61926	62028	99096	99096					0.1201706431365892
VVPVISVGSS	10	Unmodified	_VVPVISVGSS_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	471.760009765625	2	472.276575	942.538597	-0.1511	-7.1362E-05	1.4516	0.00068555	1.3005	0.00061419	472.2759165764307	75.598	0.67717	75.34	75.033	75.71	-0.25865					46	16	4	0	0	0	0.03519	1	8953	8953		29.15	11.785	1	706430			89045	10562	61927	62029	99097	99097					0.06502938211735909
VVPVLKMN	8	Unmodified	_VVPVLKMN_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1;REV__DAG1|p.A355Efs*82|1|0.25|ENSG00000173402|chr3:49531575-49531585|CTCCTCCAGTC/-|frameshift_variant	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	450.274658203125	2	450.272781	898.531009	0.37578	0.0001692	2.8124	0.0012663	3.1882	0.0014355	450.2740838776917	92.188	2.2322	92.197	91.701	93.934	0.0094147					186	53	6	0	0	0	1.0574	1	11689	11689		26.796	2.5934	1	69580000	+		89046	26770;19649	61928	62030	99098	99098					0.07768507410457914
VVPWVIALY	9	Unmodified	_VVPWVIALY_					0	0	0			REV__ENSG00000154165|ENST00000284311|GPR15	REV__ENSG00000154165|ENST00000284311|GPR15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	529.7791137695312	2	530.315503	1058.61645	-0.33076	-0.00017541	-2.2527	-0.0011946	-2.5835	-0.0013701	530.3141879495414	64.031	0.58451	63.803	63.404	63.988	-0.22773					17	14	2	0	0	0	0.024475	1	7220	7220		29.842	8.1392	1	467240	+		89047	24944	61929	62031	99099	99099					0.08948995867763188
VVQDIKDLPVL	11	Unmodified	_VVQDIKDLPVL_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5;REV__ENST00000564812.5_1_16:67289762-67292232:+|nuORF	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8696899414062	2	619.871371	1237.72819	-0.47108	-0.00029201	-2.6122	-0.0016192	-3.0832	-0.0019112	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	0.99553	1	11572	11572		37.812	3.639	1	4765600	+		89048	23576;35260	61930	62032	99100	99100					0.11883385434202864
VVQGAPLSL	9	Unmodified	_VVQGAPLSL_					0	0	0			REV__nc|ENSG00000155744|Q8IXS8|HYCC2	REV__nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	442.2656555175781	2	442.26601	882.517468	-0.029686	-1.3129E-05	-1.1289	-0.0004993	-1.1586	-0.00051242	442.2652998935689	39.191	1.2632	39.191	38.433	39.696	0					93	34	4	0	0	0	0.45795	1	3349	3349		62.107	6.6032	1	11201000	+		89049	25023	61931	62033	99101	99101					0.07150972902854846
VVQGAPLSL	9	Unmodified	_VVQGAPLSL_					0	0	0			REV__nc|ENSG00000155744|Q8IXS8|HYCC2	REV__nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	442.2658386230469	2	442.26601	882.517468	-0.51362	-0.00022716	-0.59909	-0.00026496	-1.1127	-0.00049211	442.26552280312796	39.247	1.2586	39.148	38.358	39.616	-0.098755					92	34	4	0	0	0	0.32811	2	3362	3349;3362		71.877	2.2498	1	10338000	+		89050	25023	61931	62033	99102;99103	99103					0.07150972902854846
VVQGAPLSL	9	Unmodified	_VVQGAPLSL_					0	0	0			REV__nc|ENSG00000155744|Q8IXS8|HYCC2	REV__nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	442.2655944824219	2	442.26601	882.517468	-0.70766	-0.00031297	-0.32615	-0.00014425	-1.0338	-0.00045722	442.2656669175265	39.39	1.2996	39.414	38.608	39.908	0.023727					97	35	4	0	0	0	0.17822	1	3349	3349		93.195	10.955	1	10233000	+		89051	25023	61931	62033	99104	99104					0.07150972902854846
VVQHKKSAS	9	Unmodified	_VVQHKKSAS_					0	0	0			REV__ENSG00000156453|ENST00000287008|PCDH1	REV__ENSG00000156453|ENST00000287008|PCDH1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	492.2853088378906	2	492.285266	982.555979	-0.42242	-0.00020795	0.47536	0.00023401	0.052947	2.6065E-05	492.2854628512751	93.253	1.2091	93.249	92.819	94.028	-0.0042038					66	28	4	0	0	0	0.99726	1	11819	11819		20.947	0.95016	1	2255100	+		89052	25076	61932	62034	99105	99105					0.06400278537364557
VVQHPLTVS	9	Unmodified	_VVQHPLTVS_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2642822265625	2	490.282192	978.549831	-0.35811	-0.00017557	-1.3046	-0.00063962	-1.6627	-0.00081519	490.2803605924408	51.213	0.57713	51.064	50.758	51.335	-0.14916					19	15	2	0	0	0	0.024205	1	5361	5361		44.117	0	1	60026	+		89053	23808	61933	62035	99106	99106					0.05969760305845284
VVQKGNLTV	9	Unmodified	_VVQKGNLTV_					0	0	0			REV__ALKBH8|p.E104Q|1|0.62|ENSG00000137760|chr11:107556823-107556823|C/G|missense_variant	REV__ALKBH8|p.E104Q|1|0.62|ENSG00000137760|chr11:107556823-107556823|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	479.2899169921875	2	479.290017	956.565481	-0.1334	-6.3937E-05	-0.39958	-0.00019152	-0.53298	-0.00025545	479.2897926204452	25.672	0.96147	25.672	25.445	26.406	0					66	22	5	0	0	0	0.39228	2	1225	1225;1272		66.429	4.3219	1	8145500	+		89054	19106	61934	62036	99107;99108	99107					0.08546046822880271
VVQKGNLTV	9	Unmodified	_VVQKGNLTV_					0	0	0			REV__ALKBH8|p.E104Q|1|0.62|ENSG00000137760|chr11:107556823-107556823|C/G|missense_variant	REV__ALKBH8|p.E104Q|1|0.62|ENSG00000137760|chr11:107556823-107556823|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.29010009765625	2	479.290017	956.565481	-0.4297	-0.00020595	-0.14974	-7.1771E-05	-0.57945	-0.00027772	479.28991002785864	25.738	1.0022	25.704	25.432	26.434	-0.034395					66	23	5	0	0	0	0.50848	1	1262	1262		58.782	7.4465	1	7392500	+		89055	19106	61934	62036	99109	99109					0.08546046822880271
VVQKGNLTV	9	Unmodified	_VVQKGNLTV_					0	0	0			REV__ALKBH8|p.E104Q|1|0.62|ENSG00000137760|chr11:107556823-107556823|C/G|missense_variant	REV__ALKBH8|p.E104Q|1|0.62|ENSG00000137760|chr11:107556823-107556823|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2901306152344	2	479.290017	956.565481	0.23078	0.00011061	-0.83438	-0.00039991	-0.6036	-0.0002893	479.28958159307916	25.579	0.75122	25.659	25.418	26.169	0.080088					57	17	5	0	0	0	0.31037	1	1206	1206		74.255	15.473	1	7656900	+		89056	19106	61934	62036	99110	99110					0.08546046822880271
VVQKRRSL	8	Unmodified	_VVQKRRSL_					0	0	0			REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D;REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.28692626953125	2	493.3169	984.619247	-0.53607	-0.00026445	-3.2387	-0.0015977	-3.7748	-0.0018622	493.31592287368926	22.479	0.27281	22.294	22.142	22.415	-0.18539					10	5	3	0	0	0	0.027866	1	774	774		51.335	25.885	1	78433	+		89057	36826;37164	61935	62037	99111	99111					0.12632264045259944
VVQLSIPAM	9	Unmodified	_VVQLSIPAM_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	479.27777099609375	2	479.275521	956.536489	0.51466	0.00024666	3.7322	0.0017887	4.2468	0.0020354	479.27720195704103	83.088	4.2315	82.997	81.543	85.774	-0.090454					310	100	5	0	0	0	0.83071	1	10425	10425		37.159	5.2042	1	4752300	+		89058	21107	61936	62038	99112	99112					0.05648186202256511
VVQLSIPAM	9	Unmodified	_VVQLSIPAM_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.2773132324219	2	479.275521	956.536489	0.97614	0.00046784	3.0162	0.0014456	3.9924	0.0019134	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.87448	1	10129	10129		34.173	2.6427	1	7774800	+		89059	21107	61936	62038	99113	99113					0.05648186202256511
VVQLSIPAM	9	Unmodified	_VVQLSIPAM_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.2774963378906	2	479.275521	956.536489	0.4291	0.00020566	3.4646	0.0016605	3.8937	0.0018662	479.27706601233206	83.233	3.269	83.063	82.039	85.308	-0.16915					271	76	5	0	0	0	0.70186	2	10259	10149;10259		45.952	8.1404	1	7158600	+		89060	21107	61936	62038	99114;99115	99115					0.05648186202256511
VVQLSIPAM	9	Unmodified	_VVQLSIPAM_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.2773742675781	2	479.275521	956.536489	0.2758	0.00013219	3.6384	0.0017438	3.9142	0.001876	479.27711354568044	83.078	3.4444	82.939	82.131	85.575	-0.1386					297	80	5	0	0	0	0.90698	1	10195	10195		31.955	0	1	7407200	+		89061	21107	61936	62038	99116	99116					0.05648186202256511
VVQPHQLGFKI	11	Unmodified	_VVQPHQLGFKI_					0	0	0		ENST00000422939.1_1_8:116649485-116821871:-|nuORF	ENST00000422939.1_1_8:116649485-116821871:-|nuORF	ENST00000422939.1_1_8:116649485-116821871:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.369873046875	2	633.371872	1264.72919	-2.2268	-0.0014104	-1.9925	-0.001262	-4.2193	-0.0026724	633.3704900800258	93.216	1.2663	93.076	92.131	93.397	-0.13996					96	29	4	0	0	0	1.0017	1	11455	11455		36.447	2.2742	1	1660400			89062	14016	61937	62039	99117	99117					0.10741644593804267
VVQRALNSA	9	Unmodified	_VVQRALNSA_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.27764892578125	2	479.277441	956.540328	-0.56358	-0.00027011	0.89194	0.00042749	0.32836	0.00015738	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.89441	1	10246	10246		32.812	3.6629	1	4947400			89063	2812	61938	62040	99118	99118					0.06031992020314192
VVQRALNSA	9	Unmodified	_VVQRALNSA_					0	0	0		ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	ENSG00000106771|ENST00000374586|TMEM245	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.27740478515625	2	479.277441	956.540328	0.97614	0.00046784	-0.98963	-0.00047431	-0.013495	-6.4677E-06	479.2768604697061	83.237	3.3624	83.025	81.923	85.285	-0.21159					272	78	5	0	0	0	0.85329	1	10021	10021		35.618	0	1	7774800			89064	2812	61938	62040	99119	99119					0.06031992020314192
VVQRGREFF	9	Unmodified	_VVQRGREFF_					0	0	0		ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.3107299804688	2	569.311815	1136.60908	-1.0374	-0.00059058	-1.805	-0.0010276	-2.8424	-0.0016182	569.3107065020649	38.943	1.2159	38.778	38.476	39.692	-0.16458					88	32	4	0	0	0	0.75397	1	3247	3247		42.396	1.618	1	9764300			89065	9161;16829	61939	62041	99120	99120					0.046236563200409364
VVQRGREFF	9	Unmodified	_VVQRGREFF_					0	0	0		ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENSG00000182768|ENST00000379095|NGRN;ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.310546875	2	569.311815	1136.60908	-0.49878	-0.00028396	-2.1332	-0.0012144	-2.632	-0.0014984	569.3105255305654	39.027	1.3972	38.804	38.457	39.854	-0.22311					94	36	4	0	0	0	0.70186	1	3267	3267		45.952	3.5558	1	9012200			89066	9161;16829	61939	62041	99121	99121					0.046236563200409364
VVQRTLLP	8	Unmodified	_VVQRTLLP_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	463.29461669921875	2	463.295102	924.575651	-0.66685	-0.00030895	0.10666	4.9413E-05	-0.5602	-0.00025954	463.29505731713635	48.375	0.99148	48.277	47.966	48.958	-0.097549					80	26	5	0	0	0	0.71833	1	4782	4782		65.803	2.4969	1	9029400			89067	824	61940	62042	99122	99122					0.11034654548143408
VVQRTLLP	8	Unmodified	_VVQRTLLP_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.29443359375	2	463.295102	924.575651	-0.95973	-0.00044464	0.34919	0.00016178	-0.61054	-0.00028286	463.29517850450213	48.696	1.5471	48.416	47.962	49.51	-0.27977					102	41	5	0	0	0	0.89627	1	4841	4841		51.335	1.8939	1	9984200			89068	824	61940	62042	99123	99123					0.11034654548143408
VVQRTLLP	8	Unmodified	_VVQRTLLP_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.2948303222656	2	463.295102	924.575651	-0.14797	-6.8552E-05	-0.5371	-0.00024884	-0.68507	-0.00031739	463.29478320941917	48.514	1.2853	48.332	48.02	49.305	-0.18206					98	34	5	0	0	0	0.77775	1	4803	4803		60.972	2.19	1	10417000			89069	824	61940	62042	99124	99124					0.11034654548143408
VVQSLVIA	8	Unmodified	_VVQSLVIA_					0	0	0		PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	PTPRB|p.F1269Ifs*85|1|0.07|ENSG00000127329|chr12:70559598-70559599|-/CCAAT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7618713378906	2	414.763104	827.511654	-0.11281	-4.6791E-05	-2.8477	-0.0011811	-2.9605	-0.0012279	414.7618481739228	110.56	0.5822	110.43	110.11	110.69	-0.12524					39	18	3	0	0	0	1.0572	1	13568	13568		28.254	2.8041	1	182020			89070	4234	61941	62043	99125	99125					0.09099874391176854
VVQTAPPL	8	Unmodified	_VVQTAPPL_					0	0	0			REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	412.74615478515625	2	412.747453	823.480354	0.79299	0.0003273	-3.8237	-0.0015782	-3.0307	-0.0012509	412.7457786960996	84.338	1.9792	84.338	83.605	85.584	0					109	46	5	0	0	0	1.0239	1	10545	10545		33.516	0	1	6308600	+		89071	24103	61942	62044	99126	99126					0.06155301357091503
VVQTAPPL	8	Unmodified	_VVQTAPPL_					0	0	0			REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	412.7462463378906	2	412.747453	823.480354	-0.24401	-0.00010072	-2.7496	-0.0011349	-2.9936	-0.0012356	412.7462093954923	84.44	1.6819	84.368	83.7	85.382	-0.072769					103	39	4	0	0	0	1.0574	1	10528	10528		25.45	0	1	6858600	+		89072	24103	61942	62044	99127	99127					0.06155301357091503
VVQTAPPL	8	Unmodified	_VVQTAPPL_					0	0	0			REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	412.7464294433594	2	412.747453	823.480354	-0.12119	-5.0022E-05	-2.8672	-0.0011834	-2.9884	-0.0012335	412.74615085792476	84.367	2.1052	84.393	83.555	85.66	0.026558					110	49	4	0	0	0	1.043	2	10466	10466;10475		30.504	5.0535	1	6096900	+		89073	24103	61942	62044	99128;99129	99128					0.06155301357091503
VVQTAPPL	8	Unmodified	_VVQTAPPL_					0	0	0			REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	REV__ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.7462463378906	2	412.747453	823.480354	0.53661	0.00022148	-3.6343	-0.0015	-3.0976	-0.0012785	412.7458595051266	84.56	2.4958	84.357	83.567	86.063	-0.20329					121	58	4	0	0	0	1.0239	1	10243	10243		33.516	1.5607	1	8025800	+		89074	24103	61942	62044	99130	99130					0.06155301357091503
VVQTFHGGL	9	Unmodified	_VVQTFHGGL_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	479.28955078125	2	479.261259	956.507966	-0.31858	-0.00015268	-3.4458	-0.0016514	-3.7644	-0.0018041	479.2598817949953	25.968	0.47471	25.945	25.567	26.042	-0.023088					17	10	2	0	0	0	0.024183	1	1216	1216		40.573	4.9543	1	86660			89075	4285	61943	62045	99131	99131					0.02797204617343141
VVQTKFDDV	9	Unmodified	_VVQTKFDDV_					0	0	0			REV__NFKBIZ|p.G146V|1|0.24|ENSG00000144802|chr3:101852745-101852745|G/T|missense_variant	REV__NFKBIZ|p.G146V|1|0.24|ENSG00000144802|chr3:101852745-101852745|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.3087158203125	2	525.776939	1049.53933	0.12472	6.5573E-05	-0.084111	-4.4224E-05	0.040606	2.135E-05	525.7767630646471	73.84	0.52678	73.649	73.237	73.764	-0.19027					23	13	3	0	0	0	0.024495	1	8692	8692		26.693	0	1	431240	+		89076	37278	61944	62046	99132	99132					0.016537328607682866
VVQTRPIL	8	Unmodified	_VVQTRPIL_					0	0	0		ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-3|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.29498291015625	2	463.295102	924.575651	-0.95973	-0.00044464	0.34919	0.00016178	-0.61054	-0.00028286	463.29517850450213	48.696	1.5471	48.416	47.962	49.51	-0.27977					102	41	5	0	0	0	0.74904	2	4852	4829;4852		63.306	17.354	1	9984200			89077	5612	61945	62047	99133;99134	99134					0.11034654548143408
VVQTRPIL	8	Unmodified	_VVQTRPIL_					0	0	0		ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-3|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	ENSG00000143127|ENST00000369304|ITGA10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	463.2953796386719	2	463.295102	924.575651	-0.14797	-6.8552E-05	-0.5371	-0.00024884	-0.68507	-0.00031739	463.29478320941917	48.514	1.2853	48.332	48.02	49.305	-0.18206					98	34	5	0	0	0	0.56592	2	4815	4815;4827		79.451	18.479	1	10417000			89078	5612	61945	62047	99135;99136	99135					0.11034654548143408
VVQTSPIAAVF	11	Unmodified	_VVQTSPIAAVF_					0	0	0			REV__ENST00000466698.1_1_1:156130343-156131310:+|nuORF	REV__ENST00000466698.1_1_1:156130343-156131310:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.3223876953125	2	566.324057	1130.63356	-0.88244	-0.00049975	-2.3311	-0.0013202	-3.2136	-0.0018199	566.3227485471073	106.03	0.53613	105.89	105.56	106.09	-0.1328					55	22	3	0	0	0	1.0344	1	13194	13194		29.17	1.0886	1	385150	+		89079	28142	61946	62048	99137	99137					0.07346871682898382
VVQVGKAKL	9	Unmodified	_VVQVGKAKL_					0	0	0			REV__nc|ENSG00000126432|P30044-2|PRDX5	REV__nc|ENSG00000126432|P30044-2|PRDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	471.3103332519531	2	471.310752	940.606951	1.045	0.00049253	-0.80814	-0.00038089	0.23689	0.00011165	471.31005133925555	19.695	0.44581	19.495	19.305	19.751	-0.2001					16	8	3	0	0	0	0.78069	1	450	450		40.573	7.057	1	247880	+		89080	22893	61947	62049	99138	99138					0.13427227582224077
VVQVMKLK	8	Unmodified	_VVQVMKLK_					0	0	0			REV__ACP6|p.G118Afs*7|1|0.38|ENSG00000162836|chr1:147659522-147659522|C/-|frameshift_variant	REV__ACP6|p.G118Afs*7|1|0.38|ENSG00000162836|chr1:147659522-147659522|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	472.288818359375	2	472.801706	943.588859	0.64277	0.0003039	-1.2082	-0.00057125	-0.56545	-0.00026735	472.8011730442498	94.138	0.60595	94.138	93.967	94.573	0					19	14	2	0	0	0	0.027866	1	11946	11946		19.36	0	1	120710	+		89081	19055	61948	62050	99139	99139					0.11480769335855712
VVQVQQKV	8	Unmodified	_VVQVQQKV_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	464.284423828125	2	464.284734	926.554916	-0.24436	-0.00011345	-0.40772	-0.0001893	-0.65207	-0.00030275	464.2844731676919	24.815	0.90627	24.6	24.336	25.243	-0.21511					35	20	2	0	0	0	0.78609	1	1114	1114		60.294	4.7898	1	3315900			89082	8178	61949	62051	99140	99140					0.08870064168468161
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	457.2645263671875	2	457.264333	912.514114	-0.20469	-9.3597E-05	0.25564	0.0001169	0.050953	2.3299E-05	457.2643407915372	80.913	3.7349	80.762	79.843	83.578	-0.15169					263	89	5	0	0	0	0.97924	4	10090	10019;10090;10235;10248		40.573	4.9543	1	2903100			89083	16455	61950	62052	99141;99142;99143;99144	99142					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.263916015625	2	457.264333	912.514114	0.12297	5.623E-05	0.47067	0.00021522	0.59364	0.00027145	457.26455809769396	78.62	1.7791	78.636	78.195	79.974	0.015907					113	42	3	0	0	0	1.0239	1	9679	9679		33.516	0.022601	1	771590			89084	16455	61950	62052	99145	99145					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	457.26434326171875	2	457.264333	912.514114	-0.37978	-0.00017366	0.4426	0.00020238	0.062816	2.8724E-05	457.26441566401934	80.641	3.7818	80.665	79.899	83.681	0.023216					262	90	4	0	0	0	0.93274	3	10043	9934;10020;10043		47.916	5.5195	1	2920900			89085	16455	61950	62052	99146;99147;99148	99148					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	457.26312255859375	2	457.264333	912.514114	0.3516	0.00016077	-0.33891	-0.00015497	0.012689	5.8023E-06	457.2640675136426	78.861	1.8585	78.607	77.998	79.857	-0.25471					112	43	5	0	0	0	0.97924	1	9393	9393		40.573	3.4135	1	1133100			89086	16455	61950	62052	99149	99149					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	457.263427734375	2	457.264333	912.514114	0.19667	8.9932E-05	-0.16674	-7.6245E-05	0.029932	1.3687E-05	457.2641530854736	78.972	2.3995	78.741	77.586	79.985	-0.23141					139	56	5	0	0	0	0.97924	1	9409	9409		40.573	10.069	1	1085400			89087	16455	61950	62052	99150	99150					0.054357228488470355
VVQVQRAN	8	Unmodified	_VVQVQRAN_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	457.26409912109375	2	457.264333	912.514114	-0.30083	-0.00013756	0.22296	0.00010195	-0.077871	-3.5608E-05	457.264344927363	80.953	3.7933	80.808	79.871	83.665	-0.14478					332	89	5	0	0	0	1.043	1	9738	9738		30.504	1.3541	1	3503800			89088	16455	61950	62052	99151	99151					0.054357228488470355
VVQVTWTD	8	Unmodified	_VVQVTWTD_					0	0	0		KDM4A|p.R966T|1|0.16|ENSG00000066135|chr1:43703672-43703672|G/C|missense_variant	KDM4A|p.R966T|1|0.16|ENSG00000066135|chr1:43703672-43703672|G/C|missense_variant	KDM4A|p.R966T|1|0.16|ENSG00000066135|chr1:43703672-43703672|G/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.26629638671875	2	474.245275	946.475997	-0.039032	-1.8511E-05	0.35545	0.00016857	0.31642	0.00015006	474.2453507161119	76.049	0.58066	75.791	75.557	76.138	-0.25866					26	14	2	0	0	0	0.027866	1	9033	9033		30.504	1.3541	1	389790			89089	17791	61951	62053	99152	99152					0.0006179214351504925
VVQVVYNKGFL	11	Unmodified	_VVQVVYNKGFL_					0	0	0		chr15:66460707-66481755|244|10.69|0.06|7.53|+|0|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|4	chr15:66460707-66481755|244|10.69|0.06|7.53|+|0|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|4	chr15:66460707-66481755|244|10.69|0.06|7.53|+|0|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	633.3692626953125	2	633.366256	1264.71796	0.31837	0.00020164	4.1352	0.0026191	4.4535	0.0028207	633.368770987273	93.987	2.3416	93.987	92.665	95.007	0					163	55	4	0	0	0	0.98904	2	11986	11986;12009		39.253	4.9991	1	3419700			89090	347	61952	62054	99153;99154	99153					0.0961882249964674
VVQVVYNKGFL	11	Unmodified	_VVQVVYNKGFL_					0	0	0		chr15:66460707-66481755|244|10.69|0.06|7.53|+|0|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|4	chr15:66460707-66481755|244|10.69|0.06|7.53|+|0|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|4	chr15:66460707-66481755|244|10.69|0.06|7.53|+|0|TE_info:L2c,L2c_dup117604,L2,LINE,donor,-,66460341,66460707|None,MAP2K1|4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	633.3695678710938	2	633.366256	1264.71796	1.1238	0.00071176	3.4519	0.0021863	4.5757	0.0028981	633.3683750578311	95.69	3.27	95.693	94.914	98.183	0.0033798					251	75	4	0	0	0	0.95124	2	12285	12209;12285		47.657	5.2612	1	8250400			89091	347	61952	62054	99155;99156	99156					0.0961882249964674
VVRAGPAR	8	Unmodified	_VVRAGPAR_					0	0	0		ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	413.2554931640625	2	413.256311	824.49807	0.84	0.00034713	0.045454	1.8784E-05	0.88545	0.00036592	413.2563932501172	96.606	0.6085	96.483	96.187	96.796	-0.12305					30	13	3	0	0	0	0.96719	2	11959	11947;11959		42.474	5.446	1	154790			89092	5505	61953	62055	99157;99158	99158					0.07880061402613592
VVREGPPGR	9	Unmodified	_VVREGPPGR_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	483.79022216796875	2	483.777608	965.540663	-1.0885	-0.00052659	-2.1904	-0.0010596	-3.2789	-0.0015862	483.7762387925221	46.246	0.79593	46.094	45.719	46.515	-0.15157					56	22	3	0	0	0	0.02435	1	4478	4478		42.396	16.822	1	594670	+		89093	22113	61954	62056	99159	99159					0.05651411740188905
VVRFKVPG	8	Unmodified	_VVRFKVPG_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.2857360839844	2	451.284537	900.554522	-0.15261	-6.887E-05	-0.11956	-5.3957E-05	-0.27217	-0.00012283	451.28432060037784	53.821	0.64495	53.576	53.275	53.92	-0.2453					47	19	3	0	0	0	1.0133	1	5662	5662		35.201	0	1	5271500			89094	10386	61955	62057	99160	99160					0.10026689239271036
VVRFLGPK	8	Unmodified	_VVRFLGPK_					0	0	0			REV__ENST00000512085.5_1_5:43454598-43483943:-|nuORF	REV__ENST00000512085.5_1_5:43454598-43483943:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	458.2779846191406	2	458.292362	914.570172	-0.98732	-0.00045248	0.96171	0.00044075	-0.025601	-1.1733E-05	458.29300054526885	44.307	0.14009	44.062	43.975	44.115	-0.2444					5	3	2	0	0	0	0.027866	1	4101	4101		26.796	7.4361	1	243530	+		89095	34132	61956	62058	99161	99161					0.10946975756326083
VVRFPRLF	8	Unmodified	_VVRFPRLF_					0	0	0		nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7;nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	nc|ENSG00000143493|Q9NVH2-3|INTS7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.7722778320312	2	517.318912	1032.62327	0.2463	0.00012741	2.3776	0.00123	2.6239	0.0013574	517.3201999610706	71.4	1.7858	71.138	70.602	72.388	-0.26199					71	42	2	0	0	0	0.027866	1	8485	8485		54.765	0	1	310350			89096	5654	61957	62059	99162	99162					0.10826353538959665
VVRGEPGH	8	Unmodified	_VVRGEPGH_					0	0	0			REV__ENST00000396953.6_2_3:12882387-12882978:-|nuORF	REV__ENST00000396953.6_2_3:12882387-12882978:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	426.23486328125	2	425.730126	849.4457	-0.76802	-0.00032697	1.6421	0.00069909	0.87406	0.00037212	425.7306225698579	27.036	0.92222	27.117	26.799	27.722	0.081291					37	24	3	0	0	0	0.027866	1	1480	1480		8.8223	0	1	1161000	+		89097	31753	61958	62060	99163	99163					0.014954782689983404
VVRGEPGH	8	Unmodified	_VVRGEPGH_					0	0	0			REV__ENST00000396953.6_2_3:12882387-12882978:-|nuORF	REV__ENST00000396953.6_2_3:12882387-12882978:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	425.730126	849.4457	-0.70045	-0.0002982	1.3552	0.00057697	0.6548	0.00027877	425.73047719502785	27.231	0.55093	27.231	26.993	27.544	0	0.12041	0.00020487	NaN	8.8223	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1056700	+		89098	31753	61958	62060							0.014954782689983404
VVRGEPGH	8	Unmodified	_VVRGEPGH_					0	0	0			REV__ENST00000396953.6_2_3:12882387-12882978:-|nuORF	REV__ENST00000396953.6_2_3:12882387-12882978:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	425.730126	849.4457	-0.47739	-0.00020324	0.89435	0.00038075	0.41696	0.00017751	425.7303982899725	27.196	0.69669	27.183	26.911	27.608	-0.012983	0.072579	-0.00018756	NaN	8.8223	39	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1053700	+		89099	31753	61958	62060							0.014954782689983404
VVRGILANKP	10	Unmodified	_VVRGILANKP_					0	0	0			REV__ENSG00000178235|ENST00000674365|SLITRK1	REV__ENSG00000178235|ENST00000674365|SLITRK1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.7976684570312	2	533.840208	1065.66586	0.19449	0.00010383	-1.5434	-0.00082391	-1.3489	-0.00072008	533.8394119082707	55.334	0.17416	55.334	55.216	55.39	0					6	4	2	0	0	0	0.03519	1	6103	6103		27.882	4.8398	1	59706	+		89100	27179	61959	62061	99164	99164					0.1356570387656575
VVRKGSVKD	9	Unmodified	_VVRKGSVKD_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.3009033203125	2	494.300916	986.587279	0.83498	0.00041273	-1.1174	-0.00055231	-0.28239	-0.00013958	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	0.83071	1	11998	11998		37.159	1.5408	1	37582000	+		89101	24254	61960	62062	99165	99165					0.09344851571472645
VVRKIGGTA	9	Unmodified	_VVRKIGGTA_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.21734619140625	2	450.784902	899.55525	0.3419	0.00015412	-0.61932	-0.00027918	-0.27742	-0.00012506	450.7843899598993	24.839	0.44169	24.918	24.731	25.173	0.078346					12	9	2	0	0	0	0.024381	1	1094	1094		37.159	0	1	20037			89102	2021	61961	62063	99166	99166					0.10145483888322815
VVRKIGGTA	9	Unmodified	_VVRKIGGTA_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	450.784902	899.55525	-0.9278	-0.00041824	0.94702	0.0004269	0.019221	8.6647E-06	450.78539938366856	24.947	0.3979	24.913	24.681	25.079	-0.034395	-0.0023046	0.00016517	NaN	37.159	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31980			89103	2021	61961	62063							0.10145483888322815
VVRKKIVPL	9	Unmodified	_VVRKKIVPL_					0	0	0			REV__ENSG00000116221|ENST00000360840|MRPL37	REV__ENSG00000116221|ENST00000360840|MRPL37	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.6434936523438	2	526.371144	1050.72774	-1.0766	-0.0005667	3.9403	0.002074	2.8637	0.0015073	526.3733835105922	103.19	0.7766	103.19	102.96	103.74	0					26	18	2	0	0	0	0.024541	1	13306	13306		3.6843	0	1	130610	+		89104	22272	61962	62064	99167	99167					0.204400552956713
VVRKPRASQEL	11	Unmodified	_VVRKPRASQEL_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8827514648438	2	641.883136	1281.75172	-1.4215	-0.00091243	0.37207	0.00023883	-1.0494	-0.0006736	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0238	2	11792	11792;12011		31.53	8.0071	1	3558500			89105	7764	61963	62065	99168;99169	99168					0.12211243991396259
VVRKPRASQEL	11	Unmodified	_VVRKPRASQEL_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	641.8826293945312	2	641.883136	1281.75172	-0.70618	-0.00045328	-0.46309	-0.00029725	-1.1693	-0.00075053	641.8826667860342	96.02	3.4183	95.864	94.834	98.252	-0.15646					300	79	6	0	0	0	1.0592	1	11965	11965		22.58	0.61977	1	3453200			89106	7764	61963	62065	99170	99170					0.12211243991396259
VVRLLMPQ	8	Unmodified	_VVRLLMPQ_					0	0	0			REV__ENSG00000198947|ENST00000357033|DMD	REV__ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	478.7798156738281	2	478.291505	954.568457	-0.73073	-0.0003495	-2.2622	-0.001082	-2.9929	-0.0014315	478.2897881328767	30.462	0.58688	30.283	29.953	30.54	-0.17818					25	13	3	0	0	0	0.027866	1	1951	1951		18.324	0.95945	1	76311	+		89107	28526	61964	62066	99171	99171					0.08935598676055179
VVRLPFIH	8	Unmodified	_VVRLPFIH_					0	0	0		nc|ENSG00000119771|Q96CT2-2|KLHL29;ENSG00000119771|ENST00000486442|KLHL29;ENST00000471654.1_1_2:23914526-23929531:+|nuORF	nc|ENSG00000119771|Q96CT2-2|KLHL29	nc|ENSG00000119771|Q96CT2-2|KLHL29	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.8120422363281	2	490.805637	979.596721	-0.32822	-0.00016109	1.4782	0.00072552	1.15	0.00056443	490.80556284171337	25.695	0.42545	25.524	25.282	25.708	-0.17151					21	9	3	0	0	0	0.027866	1	1215	1215		23.037	10.83	1	114770			89108	3765	61965	62067	99172	99172					0.10610664647651902
VVRRDSSH	8	Unmodified	_VVRRDSSH_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.7721862792969	2	478.25704	954.499526	0.34156	0.00016335	-4.2798	-0.0020468	-3.9382	-0.0018835	478.25508911959	24.451	0.50354	24.529	24.319	24.823	0.078344					16	10	2	0	0	0	0.027866	1	1034	1034		37.159	0	1	71947			89109	7184	61966	62068	99173	99173					0.020456507006997526
VVRSKRGFVF	10	Unmodified	_VVRSKRGFVF_					0	0	0			REV__PDGFC|p.D237H|1|0.15|ENSG00000145431|chr4:156767985-156767985|C/G|missense_variant	REV__PDGFC|p.D237H|1|0.15|ENSG00000145431|chr4:156767985-156767985|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8555297851562	2	597.858932	1193.70331	-1.5746	-0.00094138	-2.8298	-0.0016918	-4.4044	-0.0026332	597.8571365403682	103.65	1.17	103.65	103.25	104.42	0					61	27	4	0	0	0	1.089	1	13286	13286		34.173	5.023	1	414000	+		89110	24409	61967	62069	99174	99174					0.11420795142180395
VVRSLVKPE	9	Unmodified	_VVRSLVKPE_					0	0	0		nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL	nc|ENSG00000134086|P40337-3|VHL	nc|ENSG00000134086|P40337-3|VHL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.8177490234375	2	513.818941	1025.62333	0.14436	7.4175E-05	-1.1009	-0.00056565	-0.95651	-0.00049147	513.8184161292633	72.223	1.7207	72.223	71.795	73.516	0					110	42	4	0	0	0	0.29158	2	8786	8774;8786		76.774	8.8199	1	21011000			89111	4753	61968	62070	99175;99176	99176					0.11154308748336916
VVRSLVKPE	9	Unmodified	_VVRSLVKPE_					0	0	0		nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL	nc|ENSG00000134086|P40337-3|VHL	nc|ENSG00000134086|P40337-3|VHL	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.81787109375	2	513.818941	1025.62333	0.6499	0.00033393	-1.5547	-0.00079884	-0.90481	-0.00046491	513.8181162382319	72.563	1.6458	72.282	71.882	73.528	-0.28124					108	39	4	0	0	0	0.39228	1	8835	8835		66.429	0.96389	1	21118000			89112	4753	61968	62070	99177	99177					0.11154308748336916
VVRSLVKPE	9	Unmodified	_VVRSLVKPE_					0	0	0		nc|ENSG00000134086|P40337-3|VHL;nc|ENSG00000134086|P40337-2|VHL;ENSG00000134086|ENST00000256474|VHL	nc|ENSG00000134086|P40337-3|VHL	nc|ENSG00000134086|P40337-3|VHL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.8162841796875	2	513.818941	1025.62333	0.26414	0.00013572	-1.3073	-0.0006717	-1.0431	-0.00053598	513.818270164662	72.272	1.5656	72.282	71.953	73.519	0.0097733					103	39	4	0	0	0	0.53979	1	8708	8708		56.721	1.9987	1	21406000			89113	4753	61968	62070	99178	99178					0.11154308748336916
VVRSRQAGV	9	Unmodified	_VVRSRQAGV_					0	0	0		ENST00000552217.5_1_12:93861311-93862999:+|nuORF	ENST00000552217.5_1_12:93861311-93862999:+|nuORF	ENST00000552217.5_1_12:93861311-93862999:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.2923278808594	2	486.290882	970.567212	-1.0516	-0.0005114	3.1325	0.0015233	2.0809	0.0010119	486.29234932981416	59.764	1.794	59.85	59.206	61	0.085682					123	47	5	0	0	0	0.39228	1	6816	6816		66.429	5.4573	1	19443000			89114	16620	61969	62071	99179	99179					0.08075100631515397
VVRTKLFISA	10	Unmodified	_VVRTKLFISA_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3294677734375	2	567.355691	1132.69683	-1.3285	-0.00075376	-0.62164	-0.00035269	-1.9502	-0.0011064	567.3555485340293	91.379	0.60017	91.231	91.055	91.655	-0.1487					21	13	2	0	0	0	0.03519	1	11221	11221		10.265	0	1	56130	+		89115	20046	61970	62072	99180	99180					0.13578857190805138
VVRVANAP	8	Unmodified	_VVRVANAP_					0	0	0		ENST00000396020.7_1_14:50043976-50044102:-|nuORF	ENST00000396020.7_1_14:50043976-50044102:-|nuORF	ENST00000396020.7_1_14:50043976-50044102:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	413.7611389160156	2	413.250695	824.486836	-0.083921	-3.468E-05	-0.046304	-1.9135E-05	-0.13022	-5.3815E-05	413.25058608686885	45.59	0.67755	45.439	45.145	45.823	-0.15156					33	19	3	0	0	0	0.027866	1	4413	4413		25.45	0	1	1102600			89116	13539	61971	62073	99181	99181					0.06757239308456064
VVRVANAP	8	Unmodified	_VVRVANAP_					0	0	0		ENST00000396020.7_1_14:50043976-50044102:-|nuORF	ENST00000396020.7_1_14:50043976-50044102:-|nuORF	ENST00000396020.7_1_14:50043976-50044102:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	413.7613525390625	2	413.250695	824.486836	0.057268	2.3666E-05	-0.0045241	-1.8696E-06	0.052744	2.1796E-05	413.2505833055541	45.451	0.57762	45.494	45.279	45.857	0.043877					33	16	3	0	0	0	0.027866	1	4356	4356		40.573	0	1	1184900			89117	13539	61971	62073	99182	99182					0.06757239308456064
VVRVPDILI	9	Unmodified	_VVRVPDILI_					0	0	0			REV__DDX42|p.I457V|1|0.26|ENSG00000198231|chr17:63811144-63811144|A/G|missense_variant	REV__DDX42|p.I457V|1|0.26|ENSG00000198231|chr17:63811144-63811144|A/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7745361328125	2	512.331685	1022.64882	-0.23299	-0.00011937	-1.9193	-0.0009833	-2.1522	-0.0011027	512.8324911169452	24.249	0.25589	24.075	23.873	24.129	-0.17484					7	5	2	0	0	0	0.024541	1	1042	1042		24.203	0	1	26306	+		89118	19662	61972	62074	99183	99183					0.13839783270759654
VVRVQLAVV	9	Unmodified	_VVRVQLAVV_					0	0	0			REV__ENSG00000160460|ENST00000598249|SPTBN4	REV__ENSG00000160460|ENST00000598249|SPTBN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	491.2347717285156	2	491.824027	981.633501	-1.0389	-0.00051094	-0.494	-0.00024296	-1.5329	-0.0007539	491.82368254298666	40.276	0.28962	40.126	40.004	40.294	-0.1497					10	7	2	0	0	0	0.024183	1	3498	3498		50.025	0	1	173920	+		89119	25323	61973	62075	99184	99184					0.1419491647355926
VVRYGAAT	8	Unmodified	_VVRYGAAT_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-3|ATP13A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.2227478027344	2	418.734877	835.455202	0.31958	0.00013382	-0.18773	-7.8611E-05	0.13184	5.5208E-05	418.73463081263066	22.289	0.46108	22.1	21.959	22.42	-0.18894					14	9	2	0	0	0	0.027866	1	818	818		7.6903	0	1	49575	+		89120	25249	61974	62076	99185	99185					0.030892465545093728
VVSARVAPLS	10	Unmodified	_VVSARVAPLS_					0	0	0			REV__ENST00000509077.1_1_3:75378534-75378612:-|nuORF	REV__ENST00000509077.1_1_3:75378534-75378612:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	499.8031311035156	2	499.803291	997.59203	-1.1233	-0.00056142	0.36085	0.00018035	-0.76244	-0.00038107	499.8033668382612	36.154	1.6334	36.111	35.366	36.999	-0.042454					115	43	5	0	0	0	0.48123	1	2839	2839		90.37	10.919	1	5185300	+		89121	34080	61975	62077	99186	99186					0.09313735714226823
VVSDILFKI	9	Unmodified	_VVSDILFKI_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.3192749023438	2	517.318243	1032.62193	-0.012758	-6.5998E-06	-0.5977	-0.0003092	-0.61046	-0.0003158	517.317825348709	77.216	0.79726	77.216	76.955	77.752	0					32	18	2	0	0	0	0.30449	1	9534	9534		75.043	11.737	1	1780800			89122	7658	61976	62078	99187	99187					0.10692674659571821
VVSDILFKI	9	Unmodified	_VVSDILFKI_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.318359375	2	517.318243	1032.62193	-0.081352	-4.2085E-05	-0.28324	-0.00014653	-0.36459	-0.00018861	517.3178715283731	77.355	0.71022	77.144	76.954	77.664	-0.21087					38	16	3	0	0	0	0.2101	1	9521	9521		87.696	13.441	1	1801100			89123	7658	61976	62078	99188	99188					0.10692674659571821
VVSDRIPK	8	Unmodified	_VVSDRIPK_					0	0	0		ENST00000293618.12_1_12:50869692-50869887:+|nuORF	ENST00000293618.12_1_12:50869692-50869887:+|nuORF	ENST00000293618.12_1_12:50869692-50869887:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	457.65673828125	2	457.276909	912.539266	1.2685	0.00058007	3.1857	0.0014568	4.4543	0.0020368	457.27822354231785	59.701	0.4637	59.503	59.339	59.802	-0.19742					19	11	2	0	0	0	0.027866	1	6600	6600		10.866	0.6003	1	199500			89124	11807	61977	62079	99189	99189					0.07949777651435852
VVSGALSKGW	10	Unmodified	_VVSGALSKGW_					0	0	0		ENST00000264245.8_2_3:119013288-119013453:+|nuORF	ENST00000264245.8_2_3:119013288-119013453:+|nuORF	ENST00000264245.8_2_3:119013288-119013453:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.78179931640625	2	502.282192	1002.54983	-0.19742	-9.9162E-05	3.7135	0.0018652	3.5161	0.0017661	502.2840618157287	28.224	0.62381	28.305	27.95	28.574	0.080811					29	14	3	0	0	0	0.03519	1	1577	1577		34.173	0	1	619910			89125	11557	61978	62080	99190	99190					0.048657603058586574
VVSHDAKLLF	10	Unmodified	_VVSHDAKLLF_					0	0	0		NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	NBEAL1|p.N2421Kfs*2|1|0.03|ENSG00000144426|chr2:203201652-203201661|AATAGCATTC/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.8241577148438	2	564.824224	1127.63389	0.19347	0.00010928	0.31234	0.00017642	0.50581	0.00028569	564.8240843949924	102.11	0.64049	101.98	101.64	102.28	-0.12666					41	16	3	0	0	0	1.0271	1	12682	12682		42.396	3.1433	1	357960			89126	5738	61979	62081	99191	99191					0.07518291402743671
VVSHNRSL	8	Unmodified	_VVSHNRSL_					0	0	0		ENST00000587396.1_1_18:47813113-47813998:-|nuORF	ENST00000587396.1_1_18:47813113-47813998:-|nuORF	ENST00000587396.1_1_18:47813113-47813998:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	456.2586975097656	2	456.256508	910.498464	0.10015	4.5696E-05	3.843	0.0017534	3.9431	0.0017991	456.258324860341	32.29	4.0779	32.353	30.991	35.069	0.062885					273	104	3	0	0	0	0.87148	1	2414	2414		53.351	8.8204	1	17962000			89127	17269	61980	62082	99192	99192					0.039634363317986754
VVSISEPWL	9	Unmodified	_VVSISEPWL_					0	0	0			REV__nc|ENSG00000077238|P24394-3|IL4R	REV__nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	515.2844848632812	2	515.2844	1028.55425	-0.51792	-0.00026687	0.15612	8.0446E-05	-0.3618	-0.00018643	515.2843696854155	82.422	1.2714	82.422	81.909	83.18	0					58	29	3	0	0	0	0.26797	1	10289	10289		79.939	16.633	1	1598300	+		89128	20584	61981	62083	99193	99193					0.04111224728740126
VVSISEPWL	9	Unmodified	_VVSISEPWL_					0	0	0			REV__nc|ENSG00000077238|P24394-3|IL4R	REV__nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.2843627929688	2	515.2844	1028.55425	1.4488	0.00074656	-1.6418	-0.00084602	-0.19301	-9.9456E-05	515.2833921295944	82.553	1.3957	82.443	81.842	83.238	-0.11006					60	32	3	0	0	0	0.22754	2	10291	10261;10291		85.359	4.2774	1	1565800	+		89129	20584	61981	62083	99194;99195	99195					0.04111224728740126
VVSISEPWL	9	Unmodified	_VVSISEPWL_					0	0	0			REV__nc|ENSG00000077238|P24394-3|IL4R	REV__nc|ENSG00000077238|P24394-3|IL4R	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.2845458984375	2	515.2844	1028.55425	-0.78762	-0.00040585	0.48952	0.00025224	-0.2981	-0.00015361	515.2845123020854	82.345	1.3976	82.371	81.859	83.257	0.025711					61	32	3	0	0	0	0.14199	1	10226	10226		101.21	31.584	1	1626900	+		89130	20584	61981	62083	99196	99196					0.04111224728740126
VVSISEPWL	9	Unmodified	_VVSISEPWL_					0	0	0			REV__nc|ENSG00000077238|P24394-3|IL4R	REV__nc|ENSG00000077238|P24394-3|IL4R	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	515.2844	1028.55425	-0.51792	-0.00026687	0.15612	8.0446E-05	-0.3618	-0.00018643	515.2843696854155	82.422	1.2714	82.422	81.909	83.18	0	0.0097919	0.00058778	NaN	101.21	58	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1598300	+		89131	20584	61981	62083							0.04111224728740126
VVSISEPWL	9	Unmodified	_VVSISEPWL_					0	0	0			REV__nc|ENSG00000077238|P24394-3|IL4R	REV__nc|ENSG00000077238|P24394-3|IL4R	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	515.2844	1028.55425	1.4488	0.00074656	-1.6418	-0.00084602	-0.19301	-9.9456E-05	515.2833921295944	82.553	1.3957	82.443	81.842	83.238	-0.11006	0.03114	-0.0012651	NaN	101.21	60	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1565800	+		89132	20584	61981	62083							0.04111224728740126
VVSIWQQNP	9	Unmodified	_VVSIWQQNP_					0	0	0			REV__NCAM1|p.R68W|1|0.46|ENSG00000149294|chr11:113204360-113204360|C/T|missense_variant	REV__NCAM1|p.R68W|1|0.46|ENSG00000149294|chr11:113204360-113204360|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.33154296875	2	535.785099	1069.55564	-0.99597	-0.00053363	-1.2565	-0.00067323	-2.2525	-0.0012069	535.7856720132411	46.765	0.33043	46.571	46.449	46.779	-0.19387					12	9	2	0	0	0	0.024405	1	4553	4553		35.618	0	1	285270	+		89133	37263	61982	62084	99197	99197					0.023648588175319674
VVSKERKP	8	Unmodified	_VVSKERKP_					0	0	0		ENST00000378131.3_2_X:42636963-42637089:-|nuORF	ENST00000378131.3_2_X:42636963-42637089:-|nuORF	ENST00000378131.3_2_X:42636963-42637089:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	472.7453918457031	2	471.790184	941.565815	-0.79511	-0.00037512	-1.4371	-0.00067801	-2.2322	-0.0010531	471.7887873923644	49.077	0.80854	49.151	48.807	49.615	0.074196					38	21	3	0	0	0	0.027866	1	4950	4950		45.952	18.07	1	142460			89134	13228	61983	62085	99198	99198					0.0926946654275298
VVSKKKDL	8	Unmodified	_VVSKKKDL_					0	0	0			REV__nc|ENSG00000204536|Q8TD31|CCHCR1	REV__nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	458.24822998046875	2	458.794935	915.575317	-0.83627	-0.00038368	0.35807	0.00016428	-0.4782	-0.0002194	458.7950783366505	30.723	0.29054	30.723	30.467	30.758	0					9	6	2	0	0	0	0.027866	1	1995	1995		42.396	0	1	57862	+		89135	28615	61984	62086	99199	99199					0.11415234828268694
VVSKLKLL	8	Unmodified	_VVSKLKLL_					0	0	0			REV__IPPK-IARS|1|fusion	REV__IPPK-IARS|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.2743835449219	2	450.318046	898.621539	-0.17056	-7.6808E-05	1.6409	0.00073891	1.4703	0.00066211	450.318704985295	92.262	0.4694	92.253	92.005	92.475	-0.0082932					20	11	3	0	0	0	0.027866	1	11685	11685		24.203	11.244	1	185610	+		89136	28161	61985	62087	99200	99200					0.1681729973035999
VVSKMTKLV	9	Unmodified	_VVSKMTKLV_					0	0	0			REV__nc|ENSG00000136273|O60921-2|HUS1	REV__nc|ENSG00000136273|O60921-2|HUS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	502.8142395019531	2	502.81227	1003.60999	0.45345	0.000228	2.2034	0.0011079	2.6568	0.0013359	502.8134358247894	96.092	3.0449	96.098	95.307	98.352	0.0065079					205	70	6	0	0	0	0.87448	1	12300	12300		34.173	0.67956	1	17656000	+		89137	23644	61986	62088	99201	99201					0.10832734644714037
VVSKMTKLV	9	Unmodified	_VVSKMTKLV_					0	0	0			REV__nc|ENSG00000136273|O60921-2|HUS1	REV__nc|ENSG00000136273|O60921-2|HUS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.81427001953125	2	502.81227	1003.60999	0.95577	0.00048057	1.6166	0.00081285	2.5724	0.0012934	502.8131940383032	96.131	1.8999	96.133	95.739	97.639	0.0020676					149	43	5	0	0	0	0.87448	1	12263	12263		34.173	12.213	1	20046000	+		89138	23644	61986	62088	99202	99202					0.10832734644714037
VVSKMTKLV	9	Unmodified	_VVSKMTKLV_					0	0	0			REV__nc|ENSG00000136273|O60921-2|HUS1	REV__nc|ENSG00000136273|O60921-2|HUS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.814453125	2	502.81227	1003.60999	0.44787	0.00022519	2.342	0.0011776	2.7899	0.0014028	502.8135488206677	96.216	2.0121	96.08	95.682	97.694	-0.13671					136	45	5	0	0	0	0.99229	1	11986	11986		21.96	7.2958	1	16921000	+		89139	23644	61986	62088	99203	99203					0.10832734644714037
VVSLARSCN	9	Unmodified	_VVSLARSCN_					0	0	0			REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	REV__MYCBP2|p.D4584*|1|0.13|ENSG00000005810|chr13:77051054-77051055|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	473.76385498046875	2	474.750201	947.48585	0.10933	5.1903E-05	0.08566	4.0667E-05	0.19499	9.257E-05	474.75005339195695	35.452	1.978	35.452	34.746	36.724	0					111	53	3	0	0	0	0.024381	1	2666	2666		37.159	0	1	486250	+		89140	19813	61987	62089	99204	99204					0.010006568772496394
VVSQKKKP	8	Unmodified	_VVSQKKKP_					0	0	0			REV__ENSG00000116830|ENST00000369466|TTF2	REV__ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	457.75091552734375	2	457.295102	912.575651	0.59585	0.00027248	-0.35115	-0.00016058	0.2447	0.0001119	457.2948682416872	41.835	0.50539	41.835	41.615	42.12	0					20	14	2	0	0	0	0.027866	1	3779	3779		11.511	0	1	148590	+		89141	22308	61988	62090	99205	99205					0.11586654548125352
VVSRLKVHLNT	11	Unmodified	_VVSRLKVHLNT_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	422.592529296875	3	422.594461	1264.76155	-0.08907	-3.7641E-05	-4.0755	-0.0017223	-4.1646	-0.0017599	422.5926567640013	50.137	4.6284	49.986	49.043	53.671	-0.1512					373	128	6	0	0	0	1.0471	1	5203	5203		25.892	5.8612	1	15587000	+		89142	21708	61989	62091	99206	99206					0.13976431996798055
VVSSVGRGIVD	11	Unmodified	_VVSSVGRGIVD_					0	0	0			REV__nc|ENSG00000156873|P15735-2|PHKG2;REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	REV__nc|ENSG00000156873|P15735-2|PHKG2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.30859375	2	544.308938	1086.60332	-0.1491	-8.1156E-05	0.40576	0.00022086	0.25666	0.0001397	544.3091030052791	104.99	0.71271	104.82	104.47	105.18	-0.16484					71	25	4	0	0	0	1.0233	1	13053	13053		31.634	0.10446	1	741820	+		89143	25095;33514	61990	62092	99207	99207					0.06348513017724144
VVSTGIGIVN	10	Unmodified	_VVSTGIGIVN_					0	0	0			REV__nc|ENSG00000147813|Q6XQN6-2|NAPRT;REV__ENST00000464332.5_1_8:144657010-144658430:-|nuORF	REV__ENST00000464332.5_1_8:144657010-144658430:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.7754821777344	2	479.782025	957.549496	-0.64094	-0.00030751	4.362	0.0020928	3.721	0.0017853	479.7853430943342	80.473	0.75675	80.495	79.813	80.57	0.021446					25	17	2	0	0	0	0.03519	1	9829	9829		42.396	8.2236	1	275390	+		89144	36765;32969	61991	62093	99208	99208					0.06902340586009359
VVSTVAAMFA	10	Unmodified	_VVSTVAAMFA_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	497.2835693359375	2	498.265153	994.515753	-0.37827	-0.00018848	3.199	0.0015939	2.8207	0.0014055	498.2666631305976	48.51	1.2834	48.328	47.945	49.228	-0.18206					49	34	2	0	0	0	0.03519	1	4950	4950		30.504	0	1	657370	+		89145	19822	61992	62094	99209	99209					0.018275958225899558
VVSTVIIVFW	10	Unmodified	_VVSTVIIVFW_					0	0	0		ENST00000495328.5_2_9:124218117-124241469:-|nuORF;ENST00000481534.5_2_9:124214542-124241469:-|nuORF;ENST00000481799.5_2_9:124218117-124262303:-|nuORF;ENSG00000204136|ENST00000481799|GGTA1	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	ENST00000495328.5_2_9:124218117-124241469:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	582.8238525390625	2	581.847167	1161.67978	-0.10411	-6.0574E-05	-3.4886	-0.0020298	-3.5927	-0.0020904	581.8451844519093	78.372	0.539	78.388	78.235	78.774	0.015907					15	12	2	0	0	0	0.03519	1	9607	9607		23.042	0	1	48407			89146	15232	61993	62095	99210	99210					0.10540936584993688
VVSTVNNAL	9	Unmodified	_VVSTVNNAL_					0	0	0			REV__ENSG00000057019|ENST00000326840|DCBLD2	REV__ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	458.24822998046875	2	458.758549	915.502546	-0.64358	-0.00029525	1.0891	0.00049962	0.4455	0.00020438	458.7589648330957	30.109	0.45835	30.183	29.92	30.378	0.074316					21	10	3	0	0	0	0.024205	1	1882	1882		63.306	18.775	1	547930	+		89147	20218	61994	62096	99211	99211					0.04141481034844219
VVTAAHCNVS	10	Unmodified	_VVTAAHCNVS_					0	0	0		ENSG00000141086|ENST00000574481|CTRL	ENSG00000141086|ENST00000574481|CTRL	ENSG00000141086|ENST00000574481|CTRL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	500.7459411621094	2	500.747659	999.480765	-0.31893	-0.00015971	-3.283	-0.001644	-3.602	-0.0018037	500.7459488157	53.077	1.3175	52.887	52.43	53.747	-0.18982					94	35	4	0	0	0	0.64538	1	5535	5535		71.877	3.0906	1	8293900			89148	5469	61995	62097	99212	99212					-0.01899646985373238
VVTAASLDRER	11	Unmodified	_VVTAASLDRER_					0	0	0		nc|ENSG00000136099|O95206-2|PCDH8;ENSG00000136099|ENST00000377942|PCDH8	nc|ENSG00000136099|O95206-2|PCDH8	nc|ENSG00000136099|O95206-2|PCDH8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	608.836669921875	2	608.835851	1215.65715	0.19071	0.00011611	1.6648	0.0010136	1.8556	0.0011297	608.8367362655831	109.68	0.91912	109.68	109.28	110.2	0					88	42	4	0	0	0	1.0521	1	13958	13958		24.519	1.9395	1	3655100			89149	4981	61996	62098	99213	99213					0.05794685449404824
VVTAMMIVL	9	Unmodified	_VVTAMMIVL_					0	0	0			REV__ENSG00000064651|ENST00000262461|SLC12A2	REV__ENSG00000064651|ENST00000262461|SLC12A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	488.7821350097656	2	488.782124	975.549696	-0.45318	-0.0002215	0.88294	0.00043156	0.42976	0.00021006	488.7824645004465	56.701	1.2546	56.534	55.962	57.216	-0.1672					91	32	4	0	0	0	0.4855	1	6175	6175		60.294	4.7898	1	6790700	+		89150	20289	61997	62099	99214	99214					0.06094300989991552
VVTATLNPGR	10	Unmodified	_VVTATLNPGR_					0	0	0			REV__ENSG00000015532|ENST00000017003|XYLT2	REV__ENSG00000015532|ENST00000017003|XYLT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	514.2982177734375	2	514.298373	1026.58219	0.092329	4.7485E-05	-0.28028	-0.00014415	-0.18795	-9.6661E-05	514.2981816905186	95.108	0.82266	95.112	94.651	95.474	0.0033722					47	18	5	0	0	0	1.0992	1	12082	12082		32.812	0.85756	1	1292300	+		89151	19970	61998	62100	99215	99215					0.06996547708831713
VVTAVINI	8	Unmodified	_VVTAVINI_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	414.7619323730469	2	414.763104	827.511654	0.82083	0.00034045	-4.4584	-0.0018492	-3.6376	-0.0015087	414.76120537649206	87.824	2.4965	87.788	87.194	89.69	-0.035362					178	59	5	0	0	0	0.97924	1	10991	10991		40.573	0	1	53595000	+		89152	26033	61999	62101	99216	99216					0.09099874391165486
VVTAVINI	8	Unmodified	_VVTAVINI_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	414.7615051269531	2	414.763104	827.511654	-0.33499	-0.00013894	-3.3986	-0.0014096	-3.7336	-0.0015486	414.76163944478327	87.955	2.3062	87.777	87.28	89.586	-0.17875					171	55	5	0	0	0	1.0133	1	10694	10694		35.201	1.6851	1	36536000	+		89153	26033	61999	62101	99217	99217					0.09099874391165486
VVTAVINI	8	Unmodified	_VVTAVINI_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	414.7618103027344	2	414.763104	827.511654	0.29023	0.00012038	-4.0537	-0.0016813	-3.7634	-0.0015609	414.7613841509049	87.889	2.3301	87.752	87.289	89.619	-0.13744					147	55	6	0	0	0	1.0239	1	10723	10723		33.516	5.2613	1	22642000	+		89154	26033	61999	62101	99218	99218					0.09099874391165486
VVTEISVLN	9	Unmodified	_VVTEISVLN_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2610168457031	2	487.281857	972.549162	-0.85463	-0.00041645	-0.5104	-0.00024871	-1.365	-0.00066515	487.28124909380693	69.354	0.62268	69.369	69.171	69.794	0.015129					21	15	2	0	0	0	0.024495	1	8283	8283		34.173	19.308	1	306660	+		89155	23950	62000	62102	99219	99219					0.0617892086613665
VVTIAVYS	8	Unmodified	_VVTIAVYS_					0	0	0		ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	426.2474365234375	2	426.247286	850.48002	0.64102	0.00027323	-2.2208	-0.00094662	-1.5798	-0.00067339	426.2469351415712	103.39	0.60685	103.21	102.87	103.48	-0.17034					42	14	4	0	0	0	1.0133	1	12838	12838		35.201	6.9464	1	752580			89156	5599	62001	62103	99220	99220					0.04879881637236849
VVTKKKTRSG	10	Unmodified	_VVTKKKTRSG_					0	0	0			REV__ENSG00000103168|ENST00000566732|TAF1C;REV__ENST00000564774.5_1_16:84215181-84218621:-|nuORF	REV__ENSG00000103168|ENST00000566732|TAF1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.2534790039062	2	552.348397	1102.68224	-1.2558	-0.00069362	-4.0818	-0.0022546	-5.3376	-0.0029482	552.847683550804	46.04	0.13066	45.889	45.789	45.92	-0.15156					5	3	2	0	0	0	0.03519	1	4507	4507		17.468	0	1	87329	+		89157	21361;35259	62002	62104	99221	99221					0.13500785042629104
VVTLNARPA	9	Unmodified	_VVTLNARPA_					0	0	0			REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	470.78387451171875	2	470.782359	939.550165	0.20738	9.7632E-05	4.141	0.0019495	4.3484	0.0020472	470.78412015492074	46.62	1.1227	46.524	46.295	47.418	-0.096649					73	30	3	0	0	0	0.27161	1	4523	4523		79.451	2.6769	1	5816600	+		89158	20870	62003	62105	99222	99222					0.0779718002570462
VVTLNARPA	9	Unmodified	_VVTLNARPA_					0	0	0			REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	REV__ICAM1|p.C457Lfs*24|1|0.09|ENSG00000090339|chr19:10284970-10284971|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	470.78375244140625	2	470.782359	939.550165	0.18503	8.7107E-05	4.0974	0.001929	4.2824	0.0020161	470.78413225707163	46.879	1.157	46.61	46.341	47.498	-0.26939					88	31	5	0	0	0	0.39228	2	4524	4524;4545		66.429	3.123	1	10185000	+		89159	20870	62003	62105	99223;99224	99223					0.0779718002570462
VVTLRRED	8	Unmodified	_VVTLRRED_					0	0	0		ENSG00000182326|ENST00000360817|C1S;ENST00000463798.1_1_12:7171527-7172615:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.80340576171875	2	494.282723	986.550893	-0.30669	-0.00015159	0.55157	0.00027263	0.24488	0.00012104	494.28301172493246	23.279	0.35198	23.099	22.929	23.281	-0.17989					12	7	2	0	0	0	0.027866	1	891	891		47.916	10.756	1	106790			89160	9127	62004	62106	99225	99225					0.05707974674749039
VVTLVVPLL	9	Unmodified	_VVTLVVPLL_					0	0	0		ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	476.8269348144531	2	476.825704	951.636855	0.25525	0.00012171	0.022044	1.0511E-05	0.27729	0.00013222	476.8256523618295	106.23	0.44431	106.23	106.07	106.51	0.00015259					30	16	2	0	0	0	0.96855	1	13565	13565		26.796	1.3459	1	261990			89161	2588	62005	62107	99226	99226					0.1591016652756707
VVTPFLLIL	9	Unmodified	_VVTPFLLIL_					0	0	0		ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.83294677734375	2	507.833529	1013.6525	-0.0092951	-4.7204E-06	-0.26693	-0.00013556	-0.27622	-0.00014028	507.833407896246	106.98	0.39903	106.98	106.78	107.18	0.0018311					20	11	2	0	0	0	0.88411	1	13651	13651		33.516	1.9858	1	110680			89162	7381	62006	62108	99227	99227					0.14622453044626127
VVTPFLLIL	9	Unmodified	_VVTPFLLIL_					0	0	0		ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	ENSG00000165204|ENST00000277309|OR1K1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.83367919921875	2	507.833529	1013.6525	-0.83577	-0.00042443	0.90256	0.00045835	0.066783	3.3915E-05	507.8337928877734	105.04	0.48005	104.91	104.71	105.19	-0.13099					48	17	4	0	0	0	0.88411	2	13093	13093;13101		33.516	1.1603	1	244340			89163	7381	62006	62108	99228;99229	99228					0.14622453044626127
VVTPLIPTVQP	11	Unmodified	_VVTPLIPTVQP_					0	0	0		ENST00000554913.5_1_14:104163972-104164347:-|nuORF	ENST00000554913.5_1_14:104163972-104164347:-|nuORF	ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.3533935546875	2	582.355357	1162.69616	-0.68918	-0.00040135	-2.6596	-0.0015488	-3.3488	-0.0019502	582.3536897697854	102.35	1.693	102.23	101.92	103.61	-0.12666					100	40	6	0	0	0	1.0442	1	12756	12756		26.693	0	1	7549000			89164	16665	62007	62109	99230	99230					0.1213201775105972
VVTPPEHLPM	10	Unmodified	_VVTPPEHLPM_					0	0	0		ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.340087890625	2	560.296985	1118.57942	0.16844	9.4374E-05	-0.32818	-0.00018388	-0.15975	-8.9506E-05	560.2963810053693	101.18	0.25024	101.18	101.06	101.31	-0.0054474					6	5	2	0	0	0	0.03519	1	12892	12892		35.618	0	1	48879			89165	2151	62008	62110	99231	99231					0.024869562596677497
VVTPPLERIL	10	Unmodified	_VVTPPLERIL_					0	0	0		ENST00000441224.5_1_2:201981610-201994530:+|nuORF	ENST00000441224.5_1_2:201981610-201994530:+|nuORF	ENST00000441224.5_1_2:201981610-201994530:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8534545898438	2	568.855524	1135.69649	-0.25628	-0.00014578	-3.6319	-0.0020661	-3.8882	-0.0022118	568.8533241327464	101.1	1.4966	101.11	100.79	102.28	0.0090332					103	34	5	0	0	0	1.089	1	12919	12919		34.173	5.023	1	8744300			89166	14356	62009	62111	99232	99232					0.1340743747093711
VVTPVMVVGT	10	Unmodified	_VVTPVMVVGT_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	501.2900695800781	2	501.288628	1000.5627	-0.41084	-0.00020595	3.8495	0.0019297	3.4386	0.0017237	501.29062897573795	83.106	3.2022	83.106	81.097	84.3	0					189	75	4	0	0	0	1.089	1	10382	10382		34.173	5.023	1	2038300			89167	4945	62010	62112	99233	99233					0.06244455373735036
VVTPVMVVGT	10	Unmodified	_VVTPVMVVGT_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.290283203125	2	501.288628	1000.5627	0.31679	0.0001588	3.457	0.001733	3.7738	0.0018918	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	1.1329	1	10359	10359		27.882	1.1893	1	1878500			89168	4945	62010	62112	99234	99234					0.06244455373735036
VVTPVMVVGT	10	Unmodified	_VVTPVMVVGT_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903137207031	2	501.288628	1000.5627	0.077777	3.8989E-05	3.3605	0.0016846	3.4383	0.0017236	501.2902280652716	85.228	2.9242	85.09	84.323	87.247	-0.13753					209	68	4	0	0	0	1.1267	2	10290	10290;10458		29.15	3.5755	1	10074000			89169	4945	62010	62112	99235;99236	99235					0.06244455373735036
VVTQQQYK	8	Unmodified	_VVTQQQYK_					0	0	0			REV__ENSG00000196839|ENST00000372874|ADA	REV__ENSG00000196839|ENST00000372874|ADA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2721252441406	2	497.271824	992.529095	0.33768	0.00016792	0.26862	0.00013358	0.6063	0.0003015	497.2720213084273	89.52	1.2819	89.498	89.115	90.397	-0.021645					92	30	6	0	0	0	0.85409	1	11280	11280		54.765	1.4132	1	1256900	+		89170	28228	62011	62113	99237	99237					0.03253169926188093
VVTTATASVNL	11	Unmodified	_VVTTATASVNL_					0	0	0		PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant;ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;PSIP1|p.N301Kfs*8|1|0.83|ENSG00000164985|chr9:15472706-15472707|-/T|frameshift_variant	PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	PSIP1|p.D378Gfs*2|1|0.4|ENSG00000164985|chr9:15469034-15469035|-/G|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3047485351562	2	538.303321	1074.59209	-0.043972	-2.367E-05	3.4393	0.0018514	3.3953	0.0018277	538.3050088443749	85.843	1.1627	85.648	85.301	86.464	-0.19508					75	26	4	0	0	0	0.96926	1	10439	10439		43.651	2.8726	1	1686200			89171	7353	62012	62114	99238	99238					0.057776909235599305
VVTTKLVLP	9	Unmodified	_VVTTKLVLP_					0	0	0		ENST00000489787.1_1_20:48429459-48431791:+|nuORF;ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	ENST00000489787.1_1_20:48429459-48431791:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	485.2713623046875	2	485.320786	968.627018	-0.26024	-0.0001263	-1.5406	-0.0007477	-1.8009	-0.000874	485.3210795757442	32.964	0.16011	32.798	32.679	32.839	-0.16565					5	3	2	0	0	0	0.024541	1	2289	2289		17.365	0	1	21071			89172	10051	62013	62115	99239	99239					0.14144978522176643
VVTTQRTF	8	Unmodified	_VVTTQRTF_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2;ARAP2|p.I1068Nfs*41|1|0.29|ENSG00000047365|chr4:36147356-36147357|-/T|frameshift_variant;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	476.2683410644531	2	476.266542	950.51853	-0.14156	-6.7422E-05	-0.49715	-0.00023677	-0.63871	-0.0003042	476.2663416797438	31.6	1.9286	31.415	31.023	32.952	-0.18503					131	46	5	0	0	0	0.91956	1	2145	2145		49.442	1.7842	1	21439000			89173	1101;15776	62014	62116	99240	99240					0.041291872717465594
VVTTTLSPL	9	Unmodified	_VVTTTLSPL_					0	0	0			REV__ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	REV__ZNF608|p.Y996Ifs*33|1|0.34|ENSG00000168916|chr5:124647399-124647399|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	465.77752685546875	2	465.778951	929.543348	-0.52618	-0.00024508	-2.5328	-0.0011797	-3.059	-0.0014248	465.7776874321514	81.067	4.3806	80.925	79.286	83.667	-0.14249					262	103	4	0	0	0	0.80658	1	9681	9681		38.806	0	1	1029300	+		89174	26301	62015	62117	99241	99241					0.07575822354476713
VVTVIIIII	9	Unmodified	_VVTVIIIII_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.8470458984375	2	491.849179	981.683805	-1.154	-0.00056759	-1.7649	-0.00086804	-2.9188	-0.0014356	491.8482015240002	108.5	0.40751	108.36	108.07	108.48	-0.13649					34	22	3	0	0	0	1.0051	1	13406	13406		19.36	0	1	1233500			89175	3042	62016	62118	99242	99242					0.19223026078725525
VVTWKRNNSD	10	Unmodified	_VVTWKRNNSD_					0	0	0			REV__ENSG00000131019|ENST00000367339|ULBP3	REV__ENSG00000131019|ENST00000367339|ULBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.875732421875	3	406.879038	1217.61528	1.6343	0.00066496	-3.7497	-0.0015257	-2.1154	-0.00086073	406.87726413832445	20.138	1.2696	19.939	19.507	20.776	-0.19843					89	25	5	0	0	0	1.0639	1	483	483		37.508	3.5865	1	2716700	+		89176	23179	62017	62119	99243	99243					0.01518129760870579
VVVDFSATW	9	Unmodified	_VVVDFSATW_					0	0	0		nc|ENSG00000136810|P10599-2|TXN;ENSG00000136810|ENST00000374517|TXN	nc|ENSG00000136810|P10599-2|TXN	nc|ENSG00000136810|P10599-2|TXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2611694335938	2	512.260925	1022.5073	0.24334	0.00012465	-0.23125	-0.00011846	0.012093	6.1948E-06	512.2607843003206	82.982	0.72639	82.802	82.549	83.275	-0.18079					29	16	2	0	0	0	0.18915	1	10007	10007		90.777	8.4716	1	384260			89177	5046	62018	62120	99244	99244					-0.0030563482238221695
VVVDFSATW	9	Unmodified	_VVVDFSATW_					0	0	0		nc|ENSG00000136810|P10599-2|TXN;ENSG00000136810|ENST00000374517|TXN	nc|ENSG00000136810|P10599-2|TXN	nc|ENSG00000136810|P10599-2|TXN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.2613525390625	2	512.260925	1022.5073	-0.28913	-0.00014811	0.19785	0.00010135	-0.091277	-4.6758E-05	512.2609921503783	83.027	0.7316	82.888	82.523	83.255	-0.1386					31	16	2	0	0	0	0.25032	1	9987	9987		82.305	30.006	1	396150			89178	5046	62018	62120	99245	99245					-0.0030563482238221695
VVVDFSATW	9	Unmodified	_VVVDFSATW_					0	0	0		nc|ENSG00000136810|P10599-2|TXN;ENSG00000136810|ENST00000374517|TXN	nc|ENSG00000136810|P10599-2|TXN	nc|ENSG00000136810|P10599-2|TXN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.260925	1022.5073	0.56151	0.00028764	-0.47642	-0.00024405	0.085084	4.3585E-05	512.2607281191728	83.059	0.69072	82.839	82.522	83.213	-0.22015	-0.0039372	-0.0002893	NaN	90.777	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203140			89179	5046	62018	62120							-0.0030563482238221695
VVVDPAAVK	9	Unmodified	_VVVDPAAVK_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__DYNC1H1-HSP90AA1|1|fusion	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	450.2066345214844	2	449.273835	896.533118	-0.35787	-0.00016078	1.9989	0.00089803	1.641	0.00073725	449.27423271505296	23.328	0.61282	23.148	22.743	23.356	-0.17989					22	13	3	0	0	0	0.024511	1	855	855		32.812	13.452	1	136540	+		89180	28263;19723	62019	62121	99246	99246					0.08071259419898524
VVVFKITGVN	10	Unmodified	_VVVFKITGVN_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3260498046875	2	538.329142	1074.64373	-0.12202	-6.5684E-05	-3.9102	-0.002105	-4.0322	-0.0021706	538.326913718383	99.642	1.6821	99.642	99.179	100.86	0					133	40	7	0	0	0	1.1088	1	12844	12844		31.53	2.3598	1	22543000			89181	3130	62020	62122	99247	99247					0.10939479408125408
VVVGDLVEV	9	Unmodified	_VVVGDLVEV_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-2|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	ENSG00000018625|ENST00000361216|ATP1A2;nc|ENSG00000163399|P05023-3|ATP1A1	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	464.7715759277344	2	464.771126	927.527698	-0.33214	-0.00015437	1.0189	0.00047357	0.6868	0.0003192	464.7713453251725	76.146	0.76293	75.917	75.598	76.36	-0.22843					49	19	4	0	0	0	0.40179	2	9337	9337;9347		65.803	13.056	1	1452800			89182	943;7073	62021	62123	99248;99249	99248					0.06103535837428353
VVVGDLVEV	9	Unmodified	_VVVGDLVEV_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-2|ATP1A1;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	ENSG00000018625|ENST00000361216|ATP1A2;nc|ENSG00000163399|P05023-3|ATP1A1	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	464.771484375	2	464.771126	927.527698	0.96414	0.0004481	-0.35716	-0.000166	0.60698	0.00028211	464.7707826876858	75.915	0.8013	75.927	75.645	76.446	0.011635					49	20	3	0	0	0	0.33245	1	9279	9279		71.296	10.324	1	1946600			89183	943;7073	62021	62123	99250	99250					0.06103535837428353
VVVGLWPL	8	Unmodified	_VVVGLWPL_					0	0	0			REV__ENST00000409258.2_1_2:86386442-86398424:-|nuORF	REV__ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7878723144531	2	441.776014	881.537475	0.27247	0.00012037	-1.4333	-0.00063322	-1.1609	-0.00051285	441.7756666837741	40.465	0.23679	40.465	40.314	40.551	0					9	6	2	0	0	0	0.027866	1	3554	3554		33.493	16.128	1	387730	+		89184	31953	62022	62124	99251	99251					0.09196768633466945
VVVGQLIK	8	Unmodified	_VVVGQLIK_					0	0	0			REV__ENSG00000073050|ENST00000262887|XRCC1	REV__ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	428.28662109375	2	428.286746	854.558939	-0.15282	-6.5452E-05	0.29494	0.00012632	0.14212	6.0868E-05	428.28673327833013	63.282	1.0828	63.031	62.683	63.765	-0.25141					68	28	4	0	0	0	0.85409	1	7371	7371		54.765	2.4655	1	6288900	+		89185	20491	62023	62125	99252	99252					0.12584153662191966
VVVHVLDQSV	10	Unmodified	_VVVHVLDQSV_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.2590942382812	2	547.813856	1093.61316	-0.44924	-0.0002461	-1.7516	-0.00095954	-2.2008	-0.0012056	548.3137963922874	52.437	0.16129	52.247	52.147	52.308	-0.18982					6	3	2	0	0	0	0.03519	1	5443	5443		40.778	12.896	1	53638	+		89186	24090	62024	62126	99253	99253					0.07009701023071102
VVVHVLDQSV	10	Unmodified	_VVVHVLDQSV_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.813856	1093.61316	-0.38151	-0.000209	0.020969	1.1487E-05	-0.36054	-0.00019751	547.8137349125998	51.951	0.58948	51.832	51.575	52.165	-0.11876	-0.13906	-0.00070169	NaN	40.778	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901220	+		89187	24090	62024	62126							0.07009701023071102
VVVHVLDQSV	10	Unmodified	_VVVHVLDQSV_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	547.813856	1093.61316	-2.0341	-0.0011143	1.8439	0.0010101	-0.19018	-0.00010418	547.8147160623447	52.199	0.69887	51.93	51.656	52.354	-0.26904	-0.041136	0.0012956	NaN	40.778	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1014800	+		89188	24090	62024	62126							0.07009701023071102
VVVIPRRL	8	Unmodified	_VVVIPRRL_					0	0	0			REV__nc|ENSG00000169918|Q8TE49|OTUD7A;REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	REV__nc|ENSG00000169918|Q8TE49|OTUD7A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2608947753906	2	476.326737	950.63892	-0.41515	-0.00019774	-4.1125	-0.0019589	-4.5276	-0.0021566	476.32393609496154	28.218	0.43991	27.973	27.801	28.241	-0.24524					24	10	3	0	0	0	0.027866	1	1666	1666		15.636	0.97212	1	281440	+		89189	26417;29132	62025	62127	99254	99254					0.16162640056029431
VVVLFLVF	8	Unmodified	_VVVLFLVF_					0	0	0		ENST00000393674.6_1_4:175204677-175204749:-|nuORF	ENST00000393674.6_1_4:175204677-175204749:-|nuORF	ENST00000393674.6_1_4:175204677-175204749:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.2278747558594	2	468.301865	934.589176	0.1365	6.3925E-05	-4.2526	-0.0019915	-4.1161	-0.0019276	468.2997442051682	49.955	0.82774	49.675	49.28	50.108	-0.27977					33	21	2	0	0	0	0.027866	1	4979	4979		33.493	15.169	1	241320			89190	13459	62026	62128	99255	99255					0.11926512327374894
VVVLTELVV	9	Unmodified	_VVVLTELVV_					0	0	0			REV__ENST00000550482.1_1_12:54676362-54677673:+|nuORF	REV__ENST00000550482.1_1_12:54676362-54677673:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	485.8124694824219	2	485.812793	969.611034	-0.59229	-0.00028774	0.3433	0.00016678	-0.24899	-0.00012096	485.8128389294506	89.128	1.6184	88.965	88.596	90.214	-0.1626					112	38	4	0	0	0	0.64155	1	10912	10912		50.025	0	1	3930500	+		89191	34905	62027	62129	99256	99256					0.12501272285282994
VVVLTELVV	9	Unmodified	_VVVLTELVV_					0	0	0			REV__ENST00000550482.1_1_12:54676362-54677673:+|nuORF	REV__ENST00000550482.1_1_12:54676362-54677673:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.8126220703125	2	485.812793	969.611034	0.40498	0.00019674	-0.6947	-0.00033749	-0.28972	-0.00014075	485.8123485160711	89.125	2.098	88.987	88.607	90.705	-0.13762					128	49	4	0	0	0	0.4855	1	10906	10906		60.294	0	1	3117100	+		89192	34905	62027	62129	99257	99257					0.12501272285282994
VVVPQGGGQLW	11	Unmodified	_VVVPQGGGQLW_					0	0	0		ENST00000565328.5_1_16:87762954-87795686:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000565328.5_1_16:87762954-87795686:-|nuORF	ENST00000565328.5_1_16:87762954-87795686:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.315185546875	2	570.314023	1138.61349	-0.13391	-7.637E-05	0.22325	0.00012732	0.089341	5.0952E-05	570.313950031176	73.049	0.67738	72.772	72.497	73.174	-0.2769					24	15	2	0	0	0	0.95124	1	8568	8568		47.657	8.4045	1	542290			89193	2592	62028	62130	99258	99258					0.04973120742965875
VVVPREPIV	9	Unmodified	_VVVPREPIV_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.2960205078125	2	504.316035	1006.61752	-0.27677	-0.00013958	-1.3568	-0.00068427	-1.6336	-0.00082385	504.317167885771	61.655	0.3425	61.655	61.453	61.796	0					12	8	2	0	0	0	0.024294	1	7124	7124		55.504	26.355	1	77011	+		89194	27209	62029	62131	99259	99259					0.11447210236644878
VVVPSTDLA	9	Unmodified	_VVVPSTDLA_					0	0	0		ENST00000268099.13_1_15:75137197-75137386:-|nuORF	ENST00000268099.13_1_15:75137197-75137386:-|nuORF	ENST00000268099.13_1_15:75137197-75137386:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.78143310546875	2	450.755475	899.496398	0.50668	0.00022839	-3.5771	-0.0016124	-3.0704	-0.001384	450.7538531049917	98.287	0.41769	98.298	98.021	98.439	0.010231					11	9	2	0	0	0	0.024325	1	12525	12525		50.025	26.982	1	35794			89195	11626	62030	62132	99260	99260					0.042629628033296285
VVVPTMEIKV	10	Unmodified	_VVVPTMEIKV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000525056.1_1_11:108203545-108206748:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.82958984375	2	557.83066	1113.64677	-0.80211	-0.00044744	-1.7709	-0.00098786	-2.573	-0.0014353	557.8293574511442	105.46	0.96718	105.33	104.83	105.79	-0.13099					47	34	3	0	0	0	0.91051	1	13141	13141		53.351	5.6941	1	770890			89196	6083	62031	62133	99261	99261					0.09448986470647469
VVVPTMEIKV	10	Unmodified	_VVVPTMEIKV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000525056.1_1_11:108203545-108206748:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.83066	1113.64677	0.39388	0.00021972	-1.6397	-0.00091469	-1.2459	-0.00069498	558.3321088849484	105.21	0.5014	105.21	105.06	105.56	0	0.018696	0.00022915	NaN	53.351	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98022			89197	6083	62031	62133							0.09448986470647469
VVVPTMEIKV	10	Unmodified	_VVVPTMEIKV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000525056.1_1_11:108203545-108206748:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	557.83066	1113.64677	0.041449	2.3122E-05	-2.3322	-0.001301	-2.2907	-0.0012778	557.8288814772794	105.17	0.89311	105.05	104.77	105.67	-0.12444	-0.14795	-0.0005434	NaN	53.351	49	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753550			89198	6083	62031	62133							0.09448986470647469
VVVSNRLV	8	Unmodified	_VVVSNRLV_					0	0	0		DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1	DYNC1H1-HSP90AA1|1|fusion;ENSG00000080824|ENST00000216281|HSP90AA1	DYNC1H1-HSP90AA1|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	444.2632141113281	2	443.279452	884.544351	-0.84549	-0.00037479	0.34651	0.0001536	-0.49898	-0.00022119	443.27945117753194	29.666	0.46522	29.421	29.229	29.695	-0.24524					12	10	2	0	0	0	0.027866	1	1819	1819		33.516	3.674	1	59475			89199	677;1697	62032	62134	99262	99262					0.09746081514026628
VVVSRPNNL	9	Unmodified	_VVVSRPNNL_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	499.8959655761719	2	499.293091	996.571629	0.26667	0.00013315	-0.41945	-0.00020943	-0.15278	-7.6282E-05	499.2927817334298	46.563	0.76214	46.563	46.09	46.852	0					28	20	3	0	0	0	0.024405	1	4553	4553		27.882	0	1	291330	+		89200	20681	62033	62135	99263	99263					0.07320565054419603
VVVTEISL	8	Unmodified	_VVVTEISL_					0	0	0		ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	ADGRF4|p.Y437Lfs*28|1|0.29|ENSG00000153294|chr6:47714553-47714554|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	430.2300720214844	2	430.260394	858.506234	0.082215	3.5374E-05	3.2254	0.0013878	3.3076	0.0014231	430.262016117217	42.825	0.43649	42.686	42.448	42.885	-0.13929					14	11	2	0	0	0	0.027866	1	3969	3969		100.27	13.338	1	60180			89201	36	62034	62136	99264	99264					0.07132150808718052
VVVTTKKA	8	Unmodified	_VVVTTKKA_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	423.2754821777344	2	423.276378	844.538203	0.89158	0.00037738	-4.0135	-0.0016988	-3.122	-0.0013214	423.274572191514	110.14	0.65965	110.14	109.81	110.47	0					38	20	3	0	0	0	1.0574	1	14024	14024		13.775	1.5685	1	449880			89202	10583	62035	62137	99265	99265					0.10971563282510033
VVVTVHGEID	10	Unmodified	_VVVTVHGEID_					0	0	0		ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	ENSG00000150787|ENST00000280362|PTS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.3402099609375	2	534.290214	1066.56587	-0.57691	-0.00030824	-3.0717	-0.0016412	-3.6486	-0.0019494	534.2897364074319	97.423	1.1322	97.423	97.058	98.19	0					31	25	2	0	0	0	0.03519	1	12483	12483		34.173	2.6427	1	64793			89203	6157	62036	62138	99266	99266					0.03525421752101465
VVVVGCVSIL	10	Unmodified	_VVVVGCVSIL_					0	0	0			REV__ENSG00000170448|ENST00000507489|NFXL1	REV__ENSG00000170448|ENST00000507489|NFXL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	494.30084228515625	2	494.298996	986.583439	0.83498	0.00041273	2.7667	0.0013676	3.6017	0.0017803	494.3003139616817	96.25	2.3738	96.127	95.509	97.883	-0.12305					203	54	7	0	0	0	1.0665	1	11949	11949		37.159	5.2042	1	37582000	+		89204	26472	62037	62139	99267	99267					0.08961045753392227
VVVVLVHLGTT	11	Unmodified	_VVVVLVHLGTT_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8534545898438	2	568.855524	1135.69649	-0.66068	-0.00037583	-3.3379	-0.0018988	-3.9986	-0.0022746	568.8534924489414	101.15	1.6136	101.15	100.78	102.39	0					120	36	5	0	0	0	1.0399	1	12931	12931		27.882	0	1	8405100	+		89205	36337	62038	62140	99268	99268					0.1340743747093711
VVVVLVHLGTT	11	Unmodified	_VVVVLVHLGTT_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.853515625	2	568.855524	1135.69649	0.53704	0.0003055	-4.4255	-0.0025175	-3.8885	-0.002212	568.8529077944462	101.24	1.8533	101.1	100.77	102.62	-0.13156					114	42	5	0	0	0	1.0054	1	12545	12545		35.618	0	1	7301700	+		89206	36337	62038	62140	99269	99269					0.1340743747093711
VVVVLVHLGTT	11	Unmodified	_VVVVLVHLGTT_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.8532104492188	2	568.855524	1135.69649	0.4982	0.0002834	-4.3566	-0.0024783	-3.8584	-0.0021948	568.8529419921376	101.21	1.9311	101.08	100.74	102.68	-0.12576					119	46	5	0	0	0	1.0054	2	12587	12587;12599		35.618	1.4457	1	6969500	+		89207	36337	62038	62140	99270;99271	99270					0.1340743747093711
VVVVLVHLGTT	11	Unmodified	_VVVVLVHLGTT_					0	0	0			REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	REV__LTR13A_dup7|chr1:43138776-43139741:+|1.5505447620604755|0.2457820778445239|2.66|522.0|22|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.8532104492188	2	568.855524	1135.69649	0.16699	9.4994E-05	-3.9808	-0.0022645	-3.8138	-0.0021695	568.8531476773758	101.29	1.5817	101.12	100.84	102.42	-0.17178					102	36	5	0	0	0	1.0054	1	12593	12593		35.618	8.9254	1	6685000	+		89208	36337	62038	62140	99272	99272					0.1340743747093711
VVVVLYNDGY	10	Unmodified	_VVVVLYNDGY_					0	0	0			REV__ENST00000307767.12_1_17:18694301-18694337:+|nuORF	REV__ENST00000307767.12_1_17:18694301-18694337:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.7279052734375	2	570.800414	1139.58628	0.92285	0.00052676	-1.7154	-0.00097914	-0.79254	-0.00045238	570.7993971055878	51.482	0.64035	51.37	51.012	51.653	-0.11163					18	16	2	0	0	0	0.03519	1	5323	5323		31.53	3.6476	1	243470	+		89209	30146	62039	62141	99273	99273					0.022065924119033298
VVVVMIGNL	9	Unmodified	_VVVVMIGNL_					0	0	0		ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	ENSG00000188050|ENST00000340112|RNF133	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	472.2878112792969	2	472.285889	942.557224	0.48131	0.00022732	3.1588	0.0014918	3.6401	0.0017192	472.2873549355058	94.321	2.4035	94.199	93.453	95.857	-0.12215					209	55	6	0	0	0	0.92825	1	11737	11737		30.504	3.7075	1	42478000			89210	9689	62040	62142	99274	99274					0.08364776581913702
VVVVPLAVS	9	Unmodified	_VVVVPLAVS_					0	0	0		ENSG00000232070|ENST00000556585|TMEM253	ENSG00000232070|ENST00000556585|TMEM253	ENSG00000232070|ENST00000556585|TMEM253	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	441.7879943847656	2	441.786579	881.558604	-0.30752	-0.00013586	3.5494	0.0015681	3.2418	0.0014322	441.7880301271591	42.766	0.87699	42.653	41.898	42.775	-0.11253					52	22	4	0	0	0	0.90698	1	3874	3874		31.955	3.7006	1	6257200			89211	10704	62041	62143	99275	99275					0.11308733942325944
VVVVTGATNVL	11	Unmodified	_VVVVTGATNVL_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7072143554688	2	536.324057	1070.63356	-0.59631	-0.00031982	0.23426	0.00012564	-0.36206	-0.00019418	536.3238448673709	56.985	0.62151	56.817	56.558	57.18	-0.1672					33	16	3	0	0	0	0.024803	1	6186	6186		44.377	6.5657	1	596140	+		89212	25712	62042	62144	99276	99276					0.10106871682887686
VVWCVLPI	8	Unmodified	_VVWCVLPI_					0	0	0			REV__NLRP12|p.V403I|1|0.15|ENSG00000142405|chr19:53810452-53810452|C/T|missense_variant	REV__NLRP12|p.V403I|1|0.15|ENSG00000142405|chr19:53810452-53810452|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.287841796875	2	464.769874	927.525196	-0.044066	-2.048E-05	3.4829	0.0016187	3.4388	0.0015983	464.7712008103522	76.176	0.58688	75.918	75.634	76.221	-0.25866					21	14	2	0	0	0	0.027866	1	9063	9063		24.504	0	1	336820	+		89213	37287	62043	62145	99277	99277					0.05853408898769885
VVWEKSTP	8	Unmodified	_VVWEKSTP_					0	0	0		ENST00000537098.7_1_16:81743681-81743807:+|nuORF	ENST00000537098.7_1_16:81743681-81743807:+|nuORF	ENST00000537098.7_1_16:81743681-81743807:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	473.2535705566406	2	473.255643	944.496732	0.0064711	3.0625E-06	-4.358	-0.0020625	-4.3516	-0.0020594	473.2535066556965	30.552	1.0493	30.56	30.247	31.296	0.0086708					64	24	4	0	0	0	0.81662	1	1951	1951		57.811	1.0902	1	3703500			89214	16370	62044	62146	99278	99278					0.022263825232016643
VVWPNPLAW	9	Unmodified	_VVWPNPLAW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	541.2964477539062	2	541.295102	1080.57565	0.37528	0.00020314	-0.97292	-0.00052664	-0.59764	-0.0003235	541.294505224714	98.372	0.72465	98.236	97.956	98.68	-0.13625					40	16	3	0	0	0	0.33184	3	12184	12172;12184;12209		71.378	23.721	1	272330			89215	8881	62045	62147	99279;99280;99281	99280					0.03858654548139384
VVWPNPLAW	9	Unmodified	_VVWPNPLAW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.2952880859375	2	541.295102	1080.57565	0.90611	0.00049047	-1.6593	-0.00089815	-0.75315	-0.00040768	541.2942429467785	98.401	1.2925	98.276	97.911	99.204	-0.12414					64	31	3	0	0	0	0.64155	2	12193	12182;12193		50.025	11.003	1	275750			89216	8881	62045	62147	99282;99283	99283					0.03858654548139384
VVWPNPLAW	9	Unmodified	_VVWPNPLAW_					0	0	0		ENST00000494718.5_1_X:51637400-51640272:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENST00000494718.5_1_X:51637400-51640272:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	541.2950439453125	2	541.295102	1080.57565	-0.91338	-0.00049441	-0.052534	-2.8436E-05	-0.96591	-0.00052284	541.2950672829442	98.466	0.93079	98.3	97.967	98.898	-0.16521					49	21	3	0	0	0	0.29104	2	12176	12176;12188		76.847	36.274	1	306310			89217	8881	62045	62147	99284;99285	99284					0.03858654548139384
VVYASDSI	8	Unmodified	_VVYASDSI_					0	0	0			REV__nc|ENSG851|Q9QC07|ERVK-18_pol;REV__nc|ENSG821|P63135|ERVK-7_pol;REV__nc|ENSG855|P10266|ERVK-10_pol;REV__nc|ENSG826|Q9BXR3|ERVK-6_gag	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	427.74041748046875	2	427.218726	852.422899	0.68508	0.00029268	-2.7799	-0.0011876	-2.0948	-0.00089495	427.2179010002704	22.267	0.23584	22.078	21.911	22.147	-0.18894					6	4	2	0	0	0	0.027866	1	785	785		44.531	0	1	27545	+		89218	37252;37249;37253;37250	62046	62148	99286	99286					-0.00921585639150635
VVYCWPREDK	10	Unmodified	_VVYCWPREDK_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000023055	REV__CON__ENSEMBL:ENSBTAP00000023055	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	647.2675170898438	2	647.816073	1293.61759	-2.7059	-0.0017529	-0.46108	-0.0002987	-3.167	-0.0020516	648.318770704997	64.504	0.78753	64.27	63.86	64.647	-0.2345					22	19	2	0	0	0	0.03519	1	7355	7355		37.159	0	1	74439	+	+	89219	19525	62047	62149	99287	99287					-0.01747157825661816
VVYHDPEV	8	Unmodified	_VVYHDPEV_					0	0	0			REV__ENSG00000072274|ENST00000360110|TFRC	REV__ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	479.2901306152344	2	479.23745	956.460347	0.1874	8.9808E-05	-4.1519	-0.0019897	-3.9645	-0.0018999	479.2354444842691	25.936	0.96259	26.016	25.622	26.585	0.08009					34	22	3	0	0	0	0.027866	1	1206	1206		60.294	19.721	1	394450	+		89220	20468	62048	62150	99288	99288					-0.019624943735266243
VVYHGVNLD	9	Unmodified	_VVYHGVNLD_					0	0	0		ENST00000498049.1_1_2:120096602-120097535:-|nuORF;ENSG00000186132|ENST00000334816|C2orf76	ENST00000498049.1_1_2:120096602-120097535:-|nuORF	ENST00000498049.1_1_2:120096602-120097535:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.2897033691406	2	508.263999	1014.51345	-0.19395	-9.8577E-05	-0.16749	-8.5131E-05	-0.36144	-0.00018371	508.2636184269524	43.821	0.40046	43.852	43.629	44.029	0.030823					15	10	2	0	0	0	0.024354	1	4051	4051		57.811	17.033	1	279250			89221	9518	62049	62151	99289	99289					0.006768834091303688
VVYKGRRKGT	10	Unmodified	_VVYKGRRKGT_					0	0	0		ENSG00000168038|ENST00000301831|ULK4;ENST00000460978.1_1_3:41979458-41996251:-|nuORF;ENST00000497684.1_1_3:41973315-41996251:-|nuORF	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	582.3529663085938	2	582.354014	1162.69348	-0.88276	-0.00051408	-0.059109	-3.4422E-05	-0.94187	-0.0005485	582.3538408674295	102.24	1.4134	102.24	101.94	103.36	0.0073471					111	33	7	0	0	0	1.0508	1	13110	13110		39.253	7.723	1	7932900			89222	7776	62050	62152	99290	99290					0.11863607136797327
VVYKGRRKGT	10	Unmodified	_VVYKGRRKGT_					0	0	0		ENSG00000168038|ENST00000301831|ULK4;ENST00000460978.1_1_3:41979458-41996251:-|nuORF;ENST00000497684.1_1_3:41973315-41996251:-|nuORF	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	582.3538208007812	2	582.354014	1162.69348	0.45576	0.00026541	-1.5295	-0.00089072	-1.0738	-0.00062531	582.3530460378859	102.36	1.1668	102.35	101.97	103.14	-0.0054474					95	27	7	0	0	0	1.0719	1	13006	13006		36.447	14.761	1	8508600			89223	7776	62050	62152	99291	99291					0.11863607136797327
VVYKGRRKGT	10	Unmodified	_VVYKGRRKGT_					0	0	0		ENSG00000168038|ENST00000301831|ULK4;ENST00000460978.1_1_3:41979458-41996251:-|nuORF;ENST00000497684.1_1_3:41973315-41996251:-|nuORF	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	582.3533935546875	2	582.354014	1162.69348	-0.68918	-0.00040135	-0.35403	-0.00020617	-1.0432	-0.00060752	582.3536897697854	102.35	1.693	102.23	101.92	103.61	-0.12666					100	40	6	0	0	0	1.1217	1	12768	12768		21.96	1.013	1	7549000			89224	7776	62050	62152	99292	99292					0.11863607136797327
VVYLFILP	8	Unmodified	_VVYLFILP_					0	0	0			REV__ENSG00000101310|ENST00000650089|SEC23B;REV__ENSG00000100934|ENST00000307712|SEC23A	REV__ENSG00000100934|ENST00000307712|SEC23A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	481.745361328125	2	482.299322	962.584091	0.50781	0.00024492	1.3213	0.00063724	1.8291	0.00088216	482.2997838763759	17.333	0.19161	17.19	17.084	17.276	-0.14278					8	3	3	0	0	0	0.027866	1	154	154		16.705	0	1	18677	+		89225	21165;21215	62051	62153	99293	99293					0.10130208464761381
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2;CON__Q3SX09	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	598.3157958984375	2	598.316566	1194.61858	0.063432	3.7952E-05	-0.30439	-0.00018212	-0.24096	-0.00014417	598.316192444623	67.383	0.91165	67.128	66.828	67.74	-0.25516					56	21	4	0	0	0	0.26966	2	7757	7757;7768		79.713	30.271	1	1898900		+	89226	501	62052	62154	99294;99295	99294					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2;CON__Q3SX09	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	598.31640625	2	598.316566	1194.61858	-0.77772	-0.00046532	0.4364	0.0002611	-0.34132	-0.00020422	598.3166898268404	67.384	0.9501	67.151	66.807	67.757	-0.2329					67	22	4	0	0	0	0.23085	2	7764	7764;7776		84.916	43.489	1	1765500		+	89227	501	62052	62154	99296;99297	99296					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2;CON__Q3SX09	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	598.316162109375	2	598.316566	1194.61858	-0.60997	-0.00036495	0.42621	0.00025501	-0.18375	-0.00010994	598.3166970404303	67.403	0.95059	67.165	66.796	67.747	-0.23814					63	22	4	0	0	0	0.091713	2	7758	7758;7769		113.41	36.094	1	1788200		+	89228	501	62052	62154	99298;99299	99298					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2;CON__Q3SX09	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	598.316566	1194.61858	-1.7174	-0.0010276	1.3019	0.00077892	-0.41557	-0.00024864	598.317060609406	67.02	0.65189	67.02	66.798	67.45	0	-0.12976	0.001181	NaN	113.41	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428740		+	89229	501	62052	62154							0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2;CON__Q3SX09	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	598.316566	1194.61858	-0.82813	-0.00049548	0.34447	0.0002061	-0.48366	-0.00028938	598.3165950422366	67.434	0.72018	67.146	66.832	67.552	-0.28835	-0.004155	3.5335E-05	NaN	113.41	45	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405510		+	89230	501	62052	62154							0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2;CON__Q3SX09	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENST00000485743.1_1_11:5247788-5248251:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	598.316566	1194.61858	-0.75533	-0.00045193	0.0096143	5.7524E-06	-0.74572	-0.00044618	598.3162601575893	67.266	0.73637	67.29	66.898	67.635	0.023911	0.13978	-0.00036536	NaN	113.41	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358080		+	89231	501	62052	62154							0.029054246055238764
VVYQERPHLN	10	Unmodified	_VVYQERPHLN_					0	0	0			REV__nc|ENSG00000120156|Q02763-3|TEK	REV__nc|ENSG00000120156|Q02763-3|TEK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	419.2509460449219	3	418.891166	1253.65167	-0.16603	-6.9548E-05	2.5451	0.0010661	2.3791	0.00099659	419.22698209549793	25.58	0.29159	25.409	25.33	25.621	-0.17078					8	6	2	0	0	0	0.03519	1	1251	1251		12.957	0	1	18411	+		89232	22514	62053	62155	99300	99300					0.03499006657625614
VVYTLFSW	8	Unmodified	_VVYTLFSW_					0	0	0		ENST00000304511.6_1_11:85366682-85366733:+|nuORF	ENST00000304511.6_1_11:85366682-85366733:+|nuORF	ENST00000304511.6_1_11:85366682-85366733:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2799987792969	2	507.768386	1013.52222	-0.01138	-5.7783E-06	-2.2023	-0.0011183	-2.2137	-0.001124	508.26454441663947	48.221	0.62837	48.034	47.635	48.263	-0.18684					21	16	2	0	0	0	0.027866	1	4762	4762		33.516	12.569	1	800720			89233	11978	62054	62156	99301	99301					0.015998570456190464
VWDAFLSEG	9	Unmodified	_VWDAFLSEG_					0	0	0		ENST00000526474.1_1_11:67174309-67174885:+|nuORF;ENST00000529635.5_1_11:67174176-67177222:+|nuORF;ENSG00000175463|ENST00000542590|TBC1D10C	ENST00000526474.1_1_11:67174309-67174885:+|nuORF;ENST00000529635.5_1_11:67174176-67177222:+|nuORF	ENST00000526474.1_1_11:67174309-67174885:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	511.7793884277344	2	512.242732	1022.47091	-0.68192	-0.00034931	-3.5491	-0.001818	-4.231	-0.0021673	512.2408260547146	29.714	0.67635	29.469	29.142	29.819	-0.24524					34	15	3	0	0	0	0.024405	1	1848	1848		35.618	0	1	904110			89234	16123;8560	62055	62157	99302	99302					-0.03942511719083086
VWEKKPTV	8	Unmodified	_VWEKKPTV_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	493.7853698730469	2	493.78711	985.559667	0.32332	0.00015965	-4.431	-0.002188	-4.1077	-0.0020283	493.78478453528606	56.893	0.55722	56.691	56.404	56.962	-0.20208					42	14	4	0	0	0	0.56592	1	6191	6191		79.451	5.196	1	4254600			89235	6328	62056	62158	99303	99303					0.06630948311237717
VWESIHCFL	9	Unmodified	_VWESIHCFL_					0	0	0		ENST00000586602.5_1_19:9676886-9676925:-|nuORF	ENST00000586602.5_1_19:9676886-9676925:-|nuORF	ENST00000586602.5_1_19:9676886-9676925:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.3303833007812	2	567.276052	1132.53755	-0.76471	-0.0004338	3.8039	0.0021579	3.0392	0.0017241	567.278059530888	89.753	0.83975	89.59	89.215	90.054	-0.1626					27	19	2	0	0	0	0.024354	1	10971	10971		38.806	8.9646	1	111370			89236	17247	62057	62159	99304	99304					-0.02341599428837071
VWFILSIL	8	Unmodified	_VWFILSIL_					0	0	0			REV__ENST00000218432.9_1_X:71417166-71417373:+|nuORF	REV__ENST00000218432.9_1_X:71417166-71417373:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	495.80523681640625	2	495.804771	989.59499	0.24948	0.0001237	2.7435	0.0013602	2.993	0.0014839	495.8060840239016	89.945	1.4022	89.959	89.591	90.993	0.013443					84	33	4	0	0	0	1.0572	1	11282	11282		28.254	0.37203	1	1074700	+		89237	29330	62058	62160	99305	99305					0.09977610839052886
VWGYWGHTTV	10	Unmodified	_VWGYWGHTTV_					0	0	0			REV__ENST00000493184.5_1_20:18474605-18477811:-|nuORF	REV__ENST00000493184.5_1_20:18474605-18477811:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	401.86572265625	3	402.529458	1204.56654	0.014331	5.7688E-06	-2.1091	-0.00084897	-2.0948	-0.0008432	402.8636087678534	44.214	0.28538	43.969	43.829	44.115	-0.2444					9	7	2	0	0	0	0.03519	1	4085	4085		17.468	6.3712	1	32784	+		89238	20837	62059	62161	99306	99306					-0.02755738808195929
VWKLGPQL	8	Unmodified	_VWKLGPQL_					0	0	0			REV__nc|ENSG00000147257|P51654-2|GPC3	REV__nc|ENSG00000147257|P51654-2|GPC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.7838134765625	2	470.78437	939.554188	-0.74324	-0.0003499	0.72432	0.000341	-0.018919	-8.9066E-06	470.78457770753676	46.722	1.9491	46.528	46.165	48.114	-0.19387					124	53	4	0	0	0	0.91239	1	4516	4516		50.025	3.2581	1	13054000	+		89239	24544	62060	62162	99307	99307					0.081992695194117
VWKLLVTI	8	Unmodified	_VWKLLVTI_					0	0	0			REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF	REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.28863525390625	2	486.318046	970.621539	0.043524	2.1167E-05	1.1256	0.0005474	1.1691	0.00056857	486.3171418429231	58.587	0.22227	58.678	58.523	58.745	0.091217					6	5	2	0	0	0	0.027866	1	6554	6554		68.485	0	1	50236	+		89240	35619	62061	62163	99308	99308					0.13505299730377374
VWLLWALV	8	Unmodified	_VWLLWALV_					0	0	0		ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;GRIN2C|p.S602F|1|0.23|ENSG00000161509|chr17:74847504-74847504|G/A|missense_variant	ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000161509|ENST00000293190|GRIN2C	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	500.304939	998.595324	0.99374	0.00049717	-2.8516	-0.0014267	-1.8579	-0.00092951	500.80465730354445	59.912	1.3243	59.912	59.559	60.884	0					100	34	5	0	0	0	0.8525	1	6843	6843		54.895	3.5591	1	23828000			89241	6875	62062	62164	99309	99309					0.09597030558893493
VWLWRRSIRR	10	Unmodified	_VWLWRRSIRR_					0	0	0		ENST00000407404.5_1_11:47270518-47280746:+|nuORF;ENST00000531660.5_1_11:47270518-47282963:+|nuORF;ENST00000395397.7_1_11:47270518-47282963:+|nuORF	ENST00000407404.5_1_11:47270518-47280746:+|nuORF	ENST00000407404.5_1_11:47270518-47280746:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	476.2606506347656	3	476.621345	1426.8422	-0.77623	-0.00036997	4.4386	0.0021155	3.6624	0.0017456	476.95827359706067	28.006	0.19811	27.838	27.689	27.887	-0.16836					6	4	2	0	0	0	0.03519	1	1573	1573		11.097	5.398	1	53682			89242	13517	62063	62165	99310	99310					0.1458575783035485
VWPYRMKV	8	Unmodified	_VWPYRMKV_					0	0	0		ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	539.767333984375	2	539.796955	1077.57936	-1.1005	-0.00059404	1.8786	0.001014	0.77806	0.00041999	539.7989142498761	27.76	0.26816	27.76	27.616	27.884	0					9	6	2	0	0	0	0.027866	1	1533	1533		62.978	15.063	1	46685			89243	5713	62064	62166	99311	99311					0.043670010503319645
VWPYRMKV	8	Unmodified	_VWPYRMKV_					0	0	0		ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.796955	1077.57936	-1.0605	-0.00057246	5.0949	0.0027502	4.0344	0.0021778	539.7999931176505	28.049	0.15847	27.88	27.768	27.926	-0.16897	0.059756	0.0016636	NaN	83.287	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35962			89244	5713	62064	62166							0.043670010503319645
VWQQSVPE	8	Unmodified	_VWQQSVPE_					0	0	0		ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.74285888671875	2	486.742899	971.471246	-0.20063	-9.7655E-05	0.35333	0.00017198	0.1527	7.4325E-05	486.74293862454937	41.911	1.5321	41.788	41.385	42.917	-0.12299					91	40	4	0	0	0	0.56592	1	3768	3768		79.451	8.1553	1	6011400			89245	5078	62065	62167	99312	99312					-0.01563091999230437
VWRMPKEL	8	Unmodified	_VWRMPKEL_					0	0	0		ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	ENSG00000032389|ENST00000382125|EIPR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	530.7855224609375	2	529.794412	1057.57427	-0.16867	-8.9361E-05	1.7211	0.00091185	1.5525	0.00082249	529.7956221263335	52.798	0.42638	52.651	52.447	52.873	-0.14723					14	10	2	0	0	0	0.027866	1	5680	5680		37.028	13.986	1	96682			89246	1015	62066	62168	99313	99313					0.04778697187725811
VWRPPLWSDFR	11	Unmodified	_VWRPPLWSDFR_					0	0	0		ENST00000590248.1_1_18:56040426-56056538:+|nuORF	ENST00000590248.1_1_18:56040426-56056538:+|nuORF	ENST00000590248.1_1_18:56040426-56056538:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.3037109375	3	486.926211	1457.7568	-0.2788	-0.00013575	-0.34064	-0.00016587	-0.61944	-0.00030162	487.2599673207464	47.407	0.14562	47.31	47.239	47.385	-0.096649					5	3	2	0	0	0	0.024816	1	4630	4630		21.78	9.3476	1	82971			89247	17325	62067	62169	99314	99314					0.04623547853998389
VWSFLLLL	8	Unmodified	_VWSFLLLL_					0	0	0			REV__ENST00000394275.6_1_15:91477270-91478348:+|nuORF	REV__ENST00000394275.6_1_15:91477270-91478348:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.8038024902344	2	495.804771	989.59499	0.1459	7.2339E-05	2.8445	0.0014103	2.9904	0.0014827	495.8061499300666	90.036	1.1313	89.898	89.532	90.663	-0.13825					74	26	4	0	0	0	0.85409	1	11007	11007		54.765	4.7401	1	779110	+		89248	31667	62068	62170	99315	99315					0.09977610839052886
VWTDNGFGIAK	11	Unmodified	_VWTDNGFGIAK_					0	0	0			REV__ENSG00000198515|ENST00000514170|CNGA1	REV__ENSG00000198515|ENST00000514170|CNGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	604.3082885742188	2	604.308938	1206.60332	-1.5256	-0.00092195	0.98914	0.00059775	-0.53648	-0.0003242	604.3093531296586	19.861	1.2064	19.861	19.644	20.85	0					55	24	3	0	0	0	1.0123	1	471	471		18.262	0	1	158390	+		89249	28428	62069	62171	99316	99316					0.008285130177227984
VWTLAGHWATC	11	Unmodified	_VWTLAGHWATC_					0	0	0		ENST00000344119.6_1_9:140329517-140330505:-|nuORF	ENST00000344119.6_1_9:140329517-140330505:-|nuORF	ENST00000344119.6_1_9:140329517-140330505:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	415.5339660644531	3	415.534214	1243.58081	0.93449	0.00038831	-1.4251	-0.00059218	-0.49062	-0.00020387	415.53359134481263	19.877	0.72799	19.677	19.405	20.133	-0.2001					32	14	3	0	0	0	1.0371	1	477	477		28.577	3.4507	1	925430			89250	12544	62070	62172	99317	99317					-0.031234096515618148
VWWSCCLVI	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))VWWSCC(Carbamidomethyl (C))LVI_	VWWSC(0.124)C(0.876)LVI		VWWSC(-8.5)C(8.5)LVI		1	1	0		ENST00000474669.1_1_3:122439146-122439230:+|nuORF	ENST00000474669.1_1_3:122439146-122439230:+|nuORF	ENST00000474669.1_1_3:122439146-122439230:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-2	5	403.1929626464844	3	403.192801	1206.55657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.394	1	30.216	29.716	30.716	-0.17818								0	0	0	0.56622	1	1933	1933		44.117	8.9648	2				89251	15038	62071	62173	99318	99318	197				-0.038443861294354065
VYACTAVMLL	10	Oxidation (M)	_VYACTAVM(Oxidation (M))LL_		VYACTAVM(1)LL		VYACTAVM(53)LL	0	0	1		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.27978515625	2	550.279946	1098.54534	0.033356	1.8355E-05	-0.29578	-0.00016276	-0.26242	-0.00014441	550.2796722193891	72.943	0.88648	72.662	72.344	73.231	-0.28124					36	21	2	0	0	0	0.91051	1	8879	8879		53.351	9.2347	1	2081400			89252	9969	62072	62174	99319	99319		416			7.91776415098866E-06
VYAHLKLW	8	Unmodified	_VYAHLKLW_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	515.2959594726562	2	515.297645	1028.58074	-0.26039	-0.00013418	-4.277	-0.0022039	-4.5374	-0.0023381	515.2956224158916	73.619	0.82855	73.342	72.926	73.755	-0.2769					77	20	5	0	0	0	0.58212	1	8638	8638		77.944	2.9005	1	13984000			89253	5372	62073	62175	99320	99320					0.06758958410750893
VYAHLKLW	8	Unmodified	_VYAHLKLW_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.2958374023438	2	515.297645	1028.58074	-0.2986	-0.00015387	-4.2126	-0.0021708	-4.5112	-0.0023246	515.2956771851015	73.628	0.66979	73.363	73.017	73.687	-0.26479					57	16	4	0	0	0	0.44541	1	8669	8669		90.939	5.7782	1	14291000			89254	5372	62073	62175	99321	99321					0.06758958410750893
VYCIDARYY	9	Unmodified	_VYCIDARYY_					0	0	0		ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2;ENST00000461880.5_1_6:31847863-31852380:-|nuORF	ENST00000494816.5_1_6:31847863-31852859:-|nuORF	ENST00000494816.5_1_6:31847863-31852859:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	583.2977294921875	2	583.270967	1164.52738	-0.043557	-2.5405E-05	3.6058	0.0021032	3.5622	0.0020777	583.2729576783589	59.439	0.88023	59.19	58.576	59.457	-0.24842					39	21	2	0	0	0	0.023355	1	6573	6573		76.847	28.931	1	438860			89255	10336	62074	62176	99322	99322					-0.048302071540774705
VYDIAQVNL	9	Unmodified	_VYDIAQVNL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF;ENST00000491816.1_1_1:226549163-226549875:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.783203125	2	517.779482	1033.54441	-0.14699	-7.611E-05	2.8849	0.0014938	2.7379	0.0014176	517.7808742736978	42.278	1.0604	42.048	41.688	42.749	-0.23029					89	28	5	0	0	0	0.31037	1	3774	3774		74.255	5.4682	1	3864100			89256	5688	62075	62177	99323	99323					0.028980367233771176
VYDMRNILD	9	Unmodified	_VYDMRNILD_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2677001953125	2	569.781699	1137.54884	-0.44901	-0.00025584	1.0379	0.00059135	0.58884	0.00033551	569.782106462619	65.32	0.44732	65.069	64.864	65.312	-0.25112					23	10	3	0	0	0	0.024319	1	7477	7477		47.657	0	1	248500	+		89257	22225	62076	62178	99324	99324					-0.014428221253638185
VYDMRNILD	9	Unmodified	_VYDMRNILD_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	569.781699	1137.54884	-1.7429	-0.00099305	1.7442	0.00099381	0.0013255	7.5523E-07	569.7826262273304	64.99	0.35873	64.99	64.8	65.158	0	-0.088542	0.00078464	NaN	47.657	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189910	+		89258	22225	62076	62178							-0.014428221253638185
VYDMRNILD	9	Unmodified	_VYDMRNILD_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	569.781699	1137.54884	-1.0723	-0.00061097	1.0385	0.00059174	-0.033755	-1.9233E-05	569.7823228390688	65.356	0.40042	65.083	64.863	65.263	-0.27283	0.0043009	-1.9497E-05	NaN	47.657	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160100	+		89259	22225	62076	62178							-0.014428221253638185
VYDMRNILD	9	Unmodified	_VYDMRNILD_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	569.781699	1137.54884	-1.1036	-0.00062879	0.93499	0.00053274	-0.16857	-9.6046E-05	569.7820626067721	65.025	0.3998	65.062	64.854	65.254	0.037384	-0.016539	-0.00013749	NaN	47.657	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358710	+		89260	22225	62076	62178							-0.014428221253638185
VYDMRNILD	9	Unmodified	_VYDMRNILD_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	569.781699	1137.54884	-1.2829	-0.00073097	1.1301	0.00064392	-0.15278	-8.7051E-05	569.7823555151925	65.357	0.36697	65.154	64.899	65.266	-0.20254	0.075697	8.4868E-05	NaN	47.657	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276020	+		89261	22225	62076	62178							-0.014428221253638185
VYFGILLGGL	10	Unmodified	_VYFGILLGGL_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.31103515625	2	526.312961	1050.61137	0.065113	3.427E-05	-3.5669	-0.0018773	-3.5018	-0.0018431	526.3109679978525	70.517	0.55152	70.529	70.347	70.898	0.012421					23	12	2	0	0	0	1.0111	1	8460	8460		44.531	3.7529	1	735860	+		89262	23768	62077	62179	99325	99325					0.08808692005163721
VYFGIVPS	8	Unmodified	_VYFGIVPS_					0	0	0			REV__ENSG00000244694|ENST00000339488|PTCHD4	REV__ENSG00000244694|ENST00000339488|PTCHD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	441.78790283203125	2	441.242004	880.469455	-0.28809	-0.00012712	-3.9199	-0.0017296	-4.208	-0.0018567	441.24009901175526	41.378	0.38871	41.148	40.925	41.313	-0.23029					14	9	2	0	0	0	0.027866	1	3635	3635		8.8223	0	1	104040	+		89263	29003	62078	62180	99326	99326					0.024438989828126978
VYFLPVARYIR	11	Unmodified	_VYFLPVARYIR_					0	0	0		nc|ENSG00000293542|Q9UII6|DUSP13B;nc|ENSG00000293542|Q9UII6-4|DUSP13B;ENSG00000079393|ENST00000478873|DUSP13	nc|ENSG00000293542|Q9UII6|DUSP13B	nc|ENSG00000293542|Q9UII6|DUSP13B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.2334289550781	3	466.27484	1395.80269	-0.5931	-0.00027655	-2.1678	-0.0010108	-2.7609	-0.0012874	466.2737102117024	67.191	0.9789	66.953	66.69	67.669	-0.23814					58	23	4	0	0	0	0.024736	1	7808	7808		25.126	0	1	2803500			89264	1663	62079	62181	99327	99327					0.12062193036263125
VYFSSLVVSGE	11	Unmodified	_VYFSSLVVSGE_					0	0	0			REV__ENST00000488381.5_1_12:6764908-6765034:-|nuORF	REV__ENST00000488381.5_1_12:6764908-6765034:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.801513671875	2	593.803154	1185.59175	-0.22649	-0.00013449	-2.4519	-0.0014559	-2.6784	-0.0015904	593.8017657941364	35.757	2.7503	35.559	35.288	38.039	-0.19829					226	73	5	0	0	0	0.98218	1	2826	2826		40.778	0	1	111520000	+		89265	33642	62080	62182	99328	99328					0.006382712037066085
VYFVLLSRAIG	11	Unmodified	_VYFVLLSRAIG_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	413.251953125	3	413.248291	1236.72304	1.0715	0.0004428	3.2813	0.001356	4.3528	0.0017988	413.5843367164303	100.09	0.65361	100.09	99.746	100.4	0					23	16	2	0	0	0	1.0614	1	12804	12804		14.086	0	1	329900	+		89266	22806	62081	62183	99329	99329					0.11415126362271621
VYGILGAFIV	10	Unmodified	_VYGILGAFIV_					0	0	0		nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.7670288085938	2	526.312961	1050.61137	-0.61661	-0.00032453	-3.3112	-0.0017427	-3.9278	-0.0020673	526.3115031344781	30.964	0.3289	30.783	30.58	30.909	-0.18077					11	7	2	0	0	0	0.03519	1	2029	2029		19.36	0	1	39110			89267	18671	62082	62184	99330	99330					0.08808692005118246
VYHFVLSL	8	Unmodified	_VYHFVLSL_					0	0	0			REV__ENSG00000103599|ENST00000335894|IQCH	REV__ENSG00000103599|ENST00000335894|IQCH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2930908203125	2	489.276378	976.538203	-0.39489	-0.00019321	-3.1947	-0.0015631	-3.5896	-0.0017563	489.2747270275556	66.885	0.45108	66.885	66.714	67.165	0					15	10	2	0	0	0	0.027866	1	7961	7961		28.254	1.5614	1	312590	+		89268	21400	62083	62185	99331	99331					0.048995632825153734
VYHGEHEPAV	10	Unmodified	_VYHGEHEPAV_					0	0	0			REV__nc|ENSG00000037280|P35916-1|FLT4	REV__nc|ENSG00000037280|P35916-1|FLT4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.738525390625	2	569.269813	1136.52507	-0.44444	-0.000253	-0.55573	-0.00031636	-1.0002	-0.00056936	569.7708790206866	57.138	0.58338	56.97	56.823	57.406	-0.1672					22	15	2	0	0	0	0.03519	1	6257	6257		29.15	1.2673	1	215450	+		89269	20068	62084	62186	99332	99332					-0.037729195675410665
VYIIDVSQS	9	Unmodified	_VYIIDVSQS_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000484626.1_1_6:7404210-7405259:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.2735595703125	2	512.27149	1022.52843	0.13357	6.8426E-05	-0.47048	-0.00024101	-0.33691	-0.00017259	512.2708712863091	104.56	1.2177	104.44	104.06	105.28	-0.12561					69	34	3	0	0	0	0.83071	1	13055	13055		37.159	4.3467	1	236480			89270	4076	62085	62187	99333	99333					0.018063304864767815
VYKFDIAEN	9	Unmodified	_VYKFDIAEN_					0	0	0		ENST00000462245.1_1_9:126202450-126219642:-|nuORF	ENST00000462245.1_1_9:126202450-126219642:-|nuORF	ENST00000462245.1_1_9:126202450-126219642:-|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	549.7789916992188	2	549.776939	1097.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.29	1	102.12	101.62	102.62	-0.17178								0	0	0	0.56622	1	12693	12693		44.117	1.7207	1				89271	14701	62086	62188	99334	99334					-0.005542671392504417
VYKSSIDLY	9	Unmodified	_VYKSSIDLY_					0	0	0		ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	ENST00000551412.5_1_12:54718935-54741629:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2672729492188	2	544.28714	1086.55973	-0.07779	-4.234E-05	3.1916	0.0017371	3.1138	0.0016948	544.288374900816	36.189	0.1713	35.972	35.879	36.05	-0.21661					6	4	2	0	0	0	0.024457	1	2806	2806		37.159	15.457	1	75458			89272	3119	62087	62189	99335	99335					0.01990903520595566
VYLAILIVA	9	Unmodified	_VYLAILIVA_					0	0	0			REV__nc|ENSG00000103546|P23975-2|SLC6A2	REV__nc|ENSG00000103546|P23975-2|SLC6A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	487.818603515625	2	487.817879	973.621205	-0.064843	-3.1631E-05	1.5907	0.00077596	1.5258	0.00074433	487.8178408211123	103.85	1.4045	103.85	103.44	104.84	0.0031357					55	38	2	0	0	0	0.99355	1	13279	13279		21.702	0	1	163290	+		89273	21396	62088	62190	99336	99336					0.13333880010532084
VYLEGLLQ	8	Unmodified	_VYLEGLLQ_					0	0	0			REV__ENSG00000204815|ENST00000377540|ODAD4	REV__ENSG00000204815|ENST00000377540|ODAD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	466.78643798828125	2	467.765843	933.517133	1.1376	0.00053213	-0.81226	-0.00037995	0.32533	0.00015218	467.76525024702903	87.009	0.96416	87.03	86.677	87.641	0.021263					59	22	4	0	0	0	0.027866	1	10844	10844		38.806	6.8513	1	1301100	+		89274	28636	62089	62191	99337	99337					0.04771553183002197
VYLIPHLK	8	Unmodified	_VYLIPHLK_					0	0	0			REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	491.2720642089844	2	491.807845	981.601138	-0.43148	-0.00021221	-2.9405	-0.0014462	-3.372	-0.0016584	491.8058709951733	30.918	0.50573	30.74	30.366	30.872	-0.17818					15	11	2	0	0	0	0.027866	1	2015	2015		23.037	17.817	1	80243	+		89275	20088	62090	62192	99338	99338					0.10960129070565472
VYLITIIAL	9	Unmodified	_VYLITIIAL_					0	0	0		ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.32330322265625	2	509.830986	1017.64742	-0.46104	-0.00023505	-3.9228	-0.002	-4.3838	-0.002235	509.829357663301	78.971	1.4222	78.779	78.38	79.802	-0.1921					56	33	2	0	0	0	0.024262	1	9701	9701		57.811	15.337	1	243490			89276	9626	62091	62193	99339	99339					0.13930149181976503
VYLKRKTLI	9	Unmodified	_VYLKRKTLI_					0	0	0		ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	567.279296875	2	567.373884	1132.73321	0.6716	0.00038105	1.9467	0.0011045	2.6183	0.0014855	567.3732913041636	79.462	0.20775	79.216	79.07	79.278	-0.2465					7	4	2	0	0	0	0.024427	1	9499	9499		42.396	5.9494	1	52791			89277	6056	62092	62194	99340	99340					0.17215734087517376
VYLLNLVAL	9	Unmodified	_VYLLNLVAL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.3231201171875	2	509.320786	1016.62702	-0.39813	-0.00020278	3.9654	0.0020197	3.5673	0.0018169	509.32286050156773	78.341	0.65765	78.341	78.042	78.7	0					44	15	4	0	0	0	0.29104	1	9707	9707		76.847	15.875	1	3718500	+		89278	20777	62093	62195	99341	99341					0.11936978522169284
VYLLNLVAL	9	Unmodified	_VYLLNLVAL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	OPSCC_39_ClassI_Rep-1	1	509.32415771484375	2	509.320786	1016.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.125	1	79.125	78.625	79.625	0								0	0	0	0.33713	1	9809	9809		65.803	2.8247	1		+		89279	20777	62093	62195	99342	99342					0.11936978522169284
VYLLNLVAL	9	Unmodified	_VYLLNLVAL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3235168457031	2	509.320786	1016.62702	0.35018	0.00017835	3.5273	0.0017965	3.8774	0.0019749	509.3229459371607	78.47	1.5745	78.278	78.016	79.59	-0.1921					75	37	4	0	0	0	0.31247	2	9796	9780;9796		73.975	8.0773	1	3633100	+		89280	20777	62093	62195	99343;99344	99344					0.11936978522169284
VYLLNLVAL	9	Unmodified	_VYLLNLVAL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	OPSCC_39_ClassI_Rep-2	2	509.32470703125	2	509.320786	1016.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.462	1	79.29	78.79	79.79	-0.17226								0	0	0	0.33713	1	9823	9823		65.803	4.8312	1		+		89281	20777	62093	62195	99345	99345					0.11936978522169284
VYLLNLVAL	9	Unmodified	_VYLLNLVAL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.32275390625	2	509.320786	1016.62702	-0.38613	-0.00019667	4.1487	0.002113	3.7626	0.0019163	509.3230779907955	78.386	1.6534	78.402	78.155	79.808	0.015907					70	39	5	0	0	0	0.29104	3	9629	9618;9629;9728		76.847	21.342	1	3480300	+		89282	20777	62093	62195	99346;99347;99348	99347					0.11936978522169284
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.81689453125	2	531.815336	1061.61612	0.30294	0.00016111	2.2508	0.001197	2.5537	0.0013581	531.8163684196189	87.13	3.6921	87.151	86.157	89.849	0.021255					285	87	5	0	0	0	0.75282	1	10999	10999		42.474	8.9589	1	3405600			89283	37987;37994;38007;38041	62094	62196	99349	99349					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup452|chr5:76811569-76813693:+|5.940357226470443|0.1174757805189742|5.66|520.0|32|2|sense;SVA_D_dup553|chr6:148178169-148179754:-|2.604307199902471|0.0861154452067564|4.92|518.0|11|1|sense;SVA_D_dup852|chr10:87079906-87081963:+|1.7099061688184674|0.2275464998505792|2.91|515.0|15|1|sense;SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|13|1|sense;SVA_D_dup566|chr7:4623340-4624917:+|6.154926065619533|0.0521248993564986|6.88|518.0|39|3|sense;SVA_D_dup572|chr7:13101975-13103665:+|2.7818347466613016|0.0779356966125725|5.16|513.0|11|1|sense;SVA_D_dup579|chr7:27045184-27046135:+|2.967517220346961|0.0365084364271545|6.34|501.0|7|1|sense;SVA_D_dup698|chr9:34136815-34138766:+|3.27953381346742|0.1390990195228141|4.56|517.0|15|1|sense;SVA_D_dup735|chr9:128779485-128781166:+|2.5174269316792177|0.0853586984816913|4.88|518.0|31|2|sense;SVA_D_dup759|chrX:48221747-48223217:+|1.12010722759152|0.0582104413200141|4.27|510.0|28|2|sense;SVA_D_dup775|chrX:71340697-71342586:-|2.2107000626807305|0.0874932661462981|4.66|517.0|32|2|sense;SVA_D_dup844|chr10:71868658-71870506:-|1.3984120325564096|0.1268391945106466|3.46|515.0|14|1|sense;SVA_E_dup44|chr1:151599610-151601739:+|3.873970974433207|0.1194539094356717|5.02|520.0|46|3|sense;SVA_F_dup394|chr7:73283288-73285309:-|3.384714169087693|0.0859803918566289|5.3|521.0|46|3|sense;SVA_D_dup512|chr6:32384190-32386122:-|1.188595363183707|0.1197843644821261|3.31|522.0|44|3|sense;SVA_E_dup11|chr1:32973471-32975836:-|1.2035309139600878|0.2051169880834224|2.55|521.0|32|2|sense;SVA_D_dup863|chr10:119181302-119183224:-|1.1978945832125372|0.0695302514508837|4.11|510.0|15|1|sense;SVA_F_dup817|chr17:1688598-1690667:-|2.2320144179827994|0.267637048812906|3.06|517.0|34|2|sense;SVA_D_dup1387|chr20:33698513-33700714:+|2.360594652879876|0.2330631035956344|3.34|516.0|46|3|sense;SVA_D_dup1226|chr17:28458151-28459780:+|1.9650911697924356|0.0897682088224846|4.45|507.0|32|2|sense;SVA_E_dup67|chr2:27556712-27558890:-|1.502011280828838|0.255405239385631|2.56|517.0|15|1|sense;SVA_D_dup44|chr1:39912480-39914067:-|1.69517378393519|0.0664362179693723|4.67|515.0|11|1|sense;SVA_F_dup683|chr12:56075092-56076774:-|4.998254566493866|0.0829394271016015|5.91|521.0|43|3|sense;SVA_F_dup7|chr1:21388794-21389774:+|1.3894401447514817|0.0464751042637808|4.9|489.0|27|3|sense;SVA_F_dup842|chr17:42972299-42974012:+|7.203900181819833|0.1714938602276479|5.39|521.0|32|2|sense;SVA_F_dup642|chr11:66587016-66589110:+|2.3739290225413656|0.0898731684399321|4.72|520.0|34|2|sense;SVA_D_dup845|chr10:71875169-71876745:-|2.152454781854192|0.1333800050032863|4.01|521.0|14|1|sense;SVA_D_dup491|chr5:176433061-176434829:+|7.19819574476231|0.1022995588574643|6.14|520.0|33|2|sense;SVA_C_dup119|chr4:183818089-183819596:-|1.5822789596965277|0.0479649960045823|5.04|514.0|13|1|sense;SVA_D_dup1452|chr22:42749969-42751303:-|1.4593724108463837|0.0742810386059008|4.3|520.0|34|3|sense;SVA_D_dup156|chr2:25722639-25724154:-|1.499925305133981|0.1133318639884406|3.73|518.0|26|2|sense;SVA_D_dup1400|chr20:38460665-38462605:-|2.080568167745926|0.3064432374429145|2.76|514.0|42|3|sense;SVA_D_dup517|chr6:34785776-34787536:+|5.7484084480879165|0.1042097672883524|5.79|520.0|45|3|sense;SVA_D_dup538|chr6:87750391-87752134:-|2.306117735630977|0.0706983819927165|5.03|517.0|11|1|sense;SVA_D_dup988|chr12:95234672-95236468:-|1.00092835837593|0.0696233561734756|3.85|503.0|44|3|sense;SVA_F_dup4|chr1:21023240-21024912:+|3.311561691423345|0.2036143221834308|4.02|521.0|44|3|sense;SVA_D_dup602|chr7:73796619-73798125:-|1.6588193374759272|0.1135195977736819|3.87|509.0|14|1|sense;SVA_D_dup475|chr5:132982392-132983987:-|1.442576686150046|0.0791880191161603|4.19|515.0|41|3|sense;SVA_D_dup428|chr5:42979810-42981389:+|7.659783236101127|0.0660599575958224|6.86|518.0|31|2|sense;SVA_D_dup280|chr3:48733473-48735453:+|2.28887089201545|0.241565249229772|3.24|521.0|36|2|sense;SVA_D_dup20|chr1:13657371-13659077:+|4.203023642297618|0.2305323341235609|4.19|518.0|46|3|sense;SVA_B_dup163|chr4:6836548-6837952:-|2.787219337244414|0.042121959568128|6.05|506.0|8|1|sense;SVA_A_dup7|chr1:24031430-24032897:-|3.824336659190359|0.1232159385352189|4.96|522.0|30|2|sense;SVA_D_dup1448|chr22:37786200-37787616:+|2.001134499570088|0.2361041901090876|3.08|517.0|9|1|sense;SVA_D_dup132|chr1:226114299-226115980:-|2.5923218656888496|0.0922211982552955|4.81|521.0|31|2|sense;SVA_D_dup1331|chr19:38854971-38856692:-|3.69465172723636|0.199855440521665|4.21|505.0|9|1|sense;SVA_D_dup510|chr6:31931263-31933153:-|5.015512726029545|0.209081615354236|4.58|520.0|16|1|sense;SVA_D_dup1205|chr17:3563679-3565033:-|1.0319678522933358|0.1611380016859744|2.68|519.0|34|3|sense;SVA_D_dup101|chr1:179134705-179136703:+|2.922787588789393|0.081847003728104|5.16|517.0|51|3|sense;SVA_C_dup26|chr1:153574460-153575981:+|8.157617414765623|0.0744788955417672|6.78|522.0|40|3|sense;SVA_C_dup223|chr9:116839884-116841394:-|1.4901862588134025|0.0807574425734551|4.21|516.0|12|1|sense;SVA_C_dup157|chr6:87735343-87736873:-|2.661731081951706|0.0622656814040027|5.42|521.0|11|1|sense;SVA_B_dup488|chr10:59743661-59745125:+|1.1949145175612|0.1090441811979453|3.45|484.0|13|1|sense;SVA_B_dup219|chr5:42981416-42981849:+|2.0142406911333746|0.0691649166271055|4.86|505.0|15|3|sense;SVA_F_dup867|chr18:49577015-49579001:-|3.1344239529708986|0.1803518718294712|4.12|510.0|31|2|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup611|chr7:100522217-100524615:-|1.618759491258933|0.1888088900306129|3.1|517.0|32|2|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_D_dup1026|chr13:30838585-30840641:-|9.620389027127755|0.3514679219565426|4.77|522.0|13|1|sense;SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense;SVA_D_dup24|chr1:23503237-23504986:+|1.9651019435786616|0.2325590026270258|3.08|520.0|18|1|sense;SVA_F_dup96|chr2:10901947-10903908:-|1.6698565137319716|0.3241715295854261|2.36|513.0|15|1|sense	SVA_D_dup1293|chr19:38797148-38798824:-|11.425184244072469|0.2829324247822702|5.34|522.0|10|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.8167114257812	2	531.815336	1061.61612	-0.11038	-5.8701E-05	2.7717	0.001474	2.6613	0.0014153	531.8166681418455	87.404	3.5676	87.267	86.268	89.836	-0.13734					287	84	5	0	0	0	0.78069	1	10724	10724		40.573	2.7611	1	4521600			89284	37987;37994;38007;38041	62094	62196	99350	99350					0.08777576147872423
VYLMHKCQD	9	Unmodified	_VYLMHKCQD_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.8099975585938	2	568.764994	1135.51544	-0.716	-0.00040724	-0.42856	-0.00024375	-1.1446	-0.00065099	569.2658949342043	69.424	0.63069	69.424	69.202	69.832	0					24	15	2	0	0	0	0.024319	1	8345	8345		56.721	25.191	1	161520	+		89285	22074	62095	62197	99351	99351					-0.046901471689125174
VYLSNGVLD	9	Unmodified	_VYLSNGVLD_					0	0	0			REV__C3|p.K322N|1|0.35|ENSG00000125730|chr19:6713226-6713226|C/G|missense_variant	REV__C3|p.K322N|1|0.35|ENSG00000125730|chr19:6713226-6713226|C/G|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2581481933594	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.78069	1	13478	13478		40.573	4.1259	1	7056700	+		89286	19231	62096	62198	99352	99352					0.012100613149868877
VYLVDKTEL	9	Unmodified	_VYLVDKTEL_					0	0	0			REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.789794921875	2	540.30279	1078.59103	-1.1598	-0.00062663	-0.5374	-0.00029036	-1.6972	-0.00091699	540.3016694483636	82.681	0.85641	82.707	82.359	83.215	0.02655					37	19	4	0	0	0	0.024263	1	10286	10286		60.972	4.2509	1	438810	+		89287	30976	62097	62199	99353	99353					0.05487476554640125
VYLVDKTEL	9	Unmodified	_VYLVDKTEL_					0	0	0			REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.30279	1078.59103	0.22552	0.00012185	-1.978	-0.0010687	-1.7525	-0.00094686	540.3009054521762	82.801	0.69263	82.58	82.391	83.083	-0.22015	-0.094159	-0.00054493	NaN	60.972	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185690	+		89288	30976	62097	62199							0.05487476554640125
VYLVDKTEL	9	Unmodified	_VYLVDKTEL_					0	0	0			REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.30279	1078.59103	-0.0041484	-2.2414E-06	-3.1314	-0.0016919	-3.1356	-0.0016942	540.3005100525954	82.794	0.89536	82.614	82.462	83.357	-0.18079	-0.061061	-0.0017913	NaN	60.972	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264430	+		89289	30976	62097	62199							0.05487476554640125
VYLVDKTEL	9	Unmodified	_VYLVDKTEL_					0	0	0			REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	REV__ENST00000366554.2_1_1:241757174-241757237:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.30279	1078.59103	-1.3364	-0.00072206	-0.27149	-0.00014669	-1.6079	-0.00086874	540.3023237523353	82.8	0.51783	82.66	82.39	82.908	-0.14014	-0.014899	0.0012991	NaN	60.972	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213570	+		89290	30976	62097	62199							0.05487476554640125
VYPAELHLV	9	Unmodified	_VYPAELHLV_					0	0	0		ENST00000550637.1_3_16:21558725-21561602:-|nuORF	ENST00000550637.1_3_16:21558725-21561602:-|nuORF	ENST00000550637.1_3_16:21558725-21561602:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.766845703125	2	520.792392	1039.57023	0.25036	0.00013039	-2.7467	-0.0014305	-2.4963	-0.0013001	520.7907417513136	47.666	0.17163	47.479	47.389	47.561	-0.18684					10	4	3	0	0	0	0.024386	1	4659	4659		42.474	17.955	1	173910			89291	16588	62098	62200	99354	99354					0.05202930965651831
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	587.2957153320312	2	587.294965	1172.57538	-0.074375	-4.368E-05	0.47031	0.00027621	0.39593	0.00023253	587.2952118838654	73.974	2.1507	73.974	73.655	75.806	0					175	53	6	0	0	0	0.12602	4	9064	9028;9040;9052;9064		104.75	44.628	1	52037000			89292	1222	62099	62201	99355;99356;99357;99358	99358					-0.00400809962366111
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	587.295166015625	2	587.294965	1172.57538	-0.82882	-0.00048676	1.2112	0.00071133	0.38238	0.00022457	587.2956514141753	74.266	2.0461	74.007	73.701	75.747	-0.25887					171	51	5	0	0	0	0.082191	3	9057	9033;9057;9069		116.9	63.552	1	53559000			89293	1222	62099	62201	99359;99360;99361	99360					-0.00400809962366111
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	587.2955322265625	2	587.294965	1172.57538	0.30555	0.00017945	0.018597	1.0922E-05	0.32414	0.00019037	587.2949552399939	73.978	2.1464	73.988	73.677	75.823	0.0096512					165	53	5	0	0	0	0.12602	3	8975	8963;8975;8987		104.75	40.539	1	50901000			89294	1222	62099	62201	99362;99363;99364	99363					-0.00400809962366111
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	506.77874755859375	2	506.778754	1011.54295	-0.020235	-1.0255E-05	-0.11961	-6.0614E-05	-0.13984	-7.0869E-05	506.778561137882	98.7	1.3456	98.7	98.233	99.578	0					62	30	3	0	0	0	0.65391	1	12642	12642		49.211	0	1	375090			89295	5544	62100	62202	99365	99365					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	506.7785949707031	2	506.778754	1011.54295	0.11708	5.9332E-05	-0.28458	-0.00014422	-0.1675	-8.4886E-05	506.77852713670825	98.64	1.2614	98.651	98.356	99.617	0.010231					60	28	3	0	0	0	0.48384	2	12589	12589;12601		60.404	0	1	358210			89296	5544	62100	62202	99366;99367	99366					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	506.77886962890625	2	506.778754	1011.54295	0.5415	0.00027442	-0.89176	-0.00045193	-0.35026	-0.0001775	506.77823255742265	98.816	1.2162	98.812	98.307	99.523	-0.0038834					63	27	3	0	0	0	0.48384	1	12541	12541		60.404	0	1	480250			89297	5544	62100	62202	99368	99368					0.037644474252715554
VYPIINEGL	9	Unmodified	_VYPIINEGL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.28363037109375	2	509.2844	1016.55425	-0.042641	-2.1717E-05	0.011928	6.0748E-06	-0.030713	-1.5642E-05	509.28430081733813	69.901	0.81725	69.678	69.348	70.165	-0.22245					63	19	5	0	0	0	0.4752	1	8137	8137		60.972	0	1	2294300	+		89298	22245	62101	62203	99369	99369					0.04663224728756177
VYPVKNEKI	9	Unmodified	_VYPVKNEKI_					0	0	0			REV__ENST00000570136.5_1_16:2611779-2611935:+|nuORF	REV__ENST00000570136.5_1_16:2611779-2611935:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.3167724609375	2	545.318774	1088.623	-0.6354	-0.0003465	-3.2205	-0.0017562	-3.8559	-0.0021027	545.3169134493803	89.042	3.5546	89.042	88.086	91.641	0					295	84	6	0	0	0	0.87448	1	11451	11451		34.173	2.6427	1	11705000	+		89299	24055	62102	62204	99370	99370					0.08222889028479585
VYRILKLP	8	Unmodified	_VYRILKLP_					0	0	0			REV__PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	REV__PKD2|p.D767Gfs*6|1|0.05|ENSG00000118762|chr4:88065818-88065819|-/GGGCA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	502.30560302734375	2	501.328945	1000.64334	0.0092002	4.6123E-06	-0.11333	-5.6813E-05	-0.10413	-5.2201E-05	501.8304036754257	52.261	0.34061	52.114	51.985	52.326	-0.14735					13	8	2	0	0	0	0.027866	1	5597	5597		12.959	0	1	136970	+		89300	22423	62103	62205	99371	99371					0.14304104478935642
VYSCCRSPPAL	11	Unmodified	_VYSCCRSPPAL_					0	0	0			REV__ENST00000518913.5_1_8:22034120-22058713:+|nuORF	REV__ENST00000518913.5_1_8:22034120-22058713:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	598.2850341796875	2	598.283551	1194.55255	-0.12229	-7.3163E-05	3.6605	0.00219	3.5382	0.0021168	598.2857183714847	73.976	1.2918	73.976	73.784	75.076	0					46	30	3	0	0	0	0.96599	1	9050	9050		44.377	1.5129	1	1338000	+		89301	34246	62104	62206	99372	99372					-0.03694475623137805
VYSRSQLSLA	10	Unmodified	_VYSRSQLSLA_					0	0	0		ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	ENSG00000253276|ENST00000523505|CCDC71L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2704467773438	2	562.308938	1122.60332	-0.50485	-0.00028388	3.759	0.0021137	3.2541	0.0018298	562.3113639428354	64.314	0.55005	64.058	63.836	64.386	-0.25563					19	13	3	0	0	0	0.03519	1	7285	7285		64.207	16.55	1	92006			89302	10859	62105	62207	99373	99373					0.04692513017744204
VYTKVCKYVDW	11	Unmodified	_VYTKVCKYVDW_					0	0	0		ENSG00000167757|ENST00000453757|KLK11;nc|ENSG00000167757|Q9UBX7-4|KLK11;nc|ENSG00000167757|Q9UBX7|KLK11;nc|ENSG00000167757|Q9UBX7-3|KLK11	ENSG00000167757|ENST00000453757|KLK11	ENSG00000167757|ENST00000453757|KLK11	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.2991027832031	3	468.572446	1402.69551	-0.411	-0.00019258	-0.28178	-0.00013203	-0.69277	-0.00032461	468.572266796295	39.324	0.6058	39.101	38.857	39.462	-0.22311					40	15	3	0	0	0	0.024821	1	3291	3291		14.086	0	1	939390			89303	7733	62106	62208	99374	99374					0.010268550397086074
VYVALSNW	8	Unmodified	_VYVALSNW_					0	0	0			REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A	REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	476.2488098144531	2	476.25036	950.486168	-0.21111	-0.00010054	-4.3423	-0.002068	-4.5534	-0.0021686	476.248102737831	51.645	0.65362	51.497	51.193	51.846	-0.14735					44	18	3	0	0	0	0.85409	1	5471	5471		54.765	1.4132	1	2166900	+		89304	21258	62107	62209	99375	99375					0.008943998687414023
VYVKAPLTP	9	Unmodified	_VYVKAPLTP_					0	0	0			REV__ENSG00000100365|ENST00000248899|NCF4	REV__ENSG00000100365|ENST00000248899|NCF4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	495.2744445800781	2	494.29731	986.580068	0.48934	0.00024188	-0.38292	-0.00018928	0.10642	5.2603E-05	494.29694152634653	71.984	0.68173	71.993	71.69	72.371	0.0097733					30	17	2	0	0	0	0.024457	1	8698	8698		29.15	0	1	750470	+		89305	21103	62108	62210	99376	99376					0.08624118971033568
WAAGDMYLGY	10	Unmodified	_WAAGDMYLGY_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.7874145507812	2	573.749867	1145.48518	0.22923	0.00013152	-0.61921	-0.00035527	-0.38998	-0.00022375	573.7501202893689	71.289	0.44033	71.015	70.834	71.274	-0.27363					15	9	2	0	0	0	0.03519	1	8327	8327		19.36	0	1	69549	+		89306	22782	62109	62211	99377	99377					-0.0817418256244764
WAAHLLLLL	9	Unmodified	_WAAHLLLLL_					0	0	0			REV__SFI1|p.P439L|1|0.36|ENSG00000198089|chr22:31583942-31583942|C/T|missense_variant	REV__SFI1|p.P439L|1|0.36|ENSG00000198089|chr22:31583942-31583942|C/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.81005859375	2	525.328945	1048.64334	-0.84482	-0.00044381	0.70317	0.0003694	-0.14165	-7.441E-05	525.3291532800466	56.06	1.0688	55.904	55.462	56.53	-0.15656					69	27	4	0	0	0	0.024541	1	6025	6025		21.702	8.7432	1	1116800	+		89307	37482	62110	62212	99378	99378					0.12096104478973757
WAARLAQP	8	Unmodified	_WAARLAQP_					0	0	0			REV__ENST00000559229.1_1_14:24633283-24633990:+|nuORF	REV__ENST00000559229.1_1_14:24633283-24633990:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	456.79766845703125	2	456.756144	911.497735	-0.26946	-0.00012308	0.39496	0.0001804	0.1255	5.7321E-05	456.7560900587425	64.882	0.41017	64.92	64.707	65.117	0.037384					17	10	2	0	0	0	0.027866	1	7568	7568		35.201	9.7505	1	217460	+		89308	35117	62111	62213	99379	99379					0.038446416827468965
WAEDQTLLY	9	Unmodified	_WAEDQTLLY_					0	0	0			REV__sp|P03217|AN_EBVB9ShutoffalkalineexonucleaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF5PE=1SV=1	REV__sp|P03217|AN_EBVB9ShutoffalkalineexonucleaseOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=BGLF5PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7750854492188	2	569.774396	1137.53424	0.82125	0.00046793	-0.47019	-0.0002679	0.35106	0.00020002	569.7741095752219	77.875	1.7748	77.632	77.32	79.095	-0.24232					78	41	5	0	0	0	0.4752	1	9280	9280		60.972	0	1	9792300	+		89309	37544	62112	62214	99380	99380					-0.029025710018458994
WAGGLVRYRLN	11	Unmodified	_WAGGLVRYRLN_					0	0	0			REV__ENSG00000075275|ENST00000674500|CELSR1	REV__ENSG00000075275|ENST00000674500|CELSR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	434.78033447265625	3	435.578923	1303.71494	-0.80827	-0.00035207	1.4051	0.00061204	0.59684	0.00025997	435.5789914006679	38.897	0.1496	38.924	38.81	38.96	0.027279					5	3	2	0	0	0	0.024759	1	3224	3224		23.378	20.352	1	26125	+		89310	20542	62113	62215	99381	99381					0.07522992165513642
WAKMAIFIY	9	Unmodified	_WAKMAIFIY_					0	0	0		ENST00000528488.5_1_11:47073946-47158905:+|nuORF	ENST00000528488.5_1_11:47073946-47158905:+|nuORF	ENST00000528488.5_1_11:47073946-47158905:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	571.8479614257812	2	571.806988	1141.59942	0.0061082	3.4927E-06	0.81197	0.00046429	0.81808	0.00046778	571.8081551959671	18.932	0.19571	18.809	18.654	18.85	-0.12288					5	3	2	0	0	0	0.024517	1	334	334		26.796	0	1	7145.8			89311	16183	62114	62216	99382	99382					0.03428751990281853
WALDVAFLWK	10	Unmodified	_WALDVAFLWK_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2;ENST00000484318.5_1_20:44985260-44987241:-|nuORF	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MSMS	OPSCC_39_ClassI_Rep-3	3	416.9001159667969	3	416.89737	1247.67028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.28	1	16.337	15.837	16.837	0.057352								0	0	0	0.77428	1	59	59		17.468	0.75062	1				89312	1682	62115	62217	99383	99383					0.05635168299431825
WALKKGSKLC	10	Unmodified	_WALKKGSKLC_					0	0	0			REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	REV__TBCCD1|p.I353Yfs*19|1|0.13|ENSG00000113838|chr3:186554741-186554742|-/GCTAGAGGACCATA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3306884765625	2	567.328619	1132.64269	-0.58751	-0.00033331	2.9886	0.0016955	2.4011	0.0013622	567.3302087533135	102.58	0.65005	102.57	102.33	102.98	-0.0046005					37	15	4	0	0	0	1.1246	1	13074	13074		23.523	0.48021	1	995510	+		89313	22094	62116	62218	99384	99384					0.0816694176760393
WALLYHALV	9	Unmodified	_WALLYHALV_					0	0	0		ENSG00000184156|ENST00000388996|KCNQ3;ENST00000519589.1_1_8:133153289-133492518:-|nuORF	ENSG00000184156|ENST00000388996|KCNQ3	ENSG00000184156|ENST00000388996|KCNQ3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.831787109375	2	543.310752	1084.60695	-0.079265	-4.3066E-05	3.7705	0.0020486	3.6913	0.0020055	543.314140112876	71.729	0.41809	71.729	71.377	71.795	0					24	10	3	0	0	0	0.024289	1	8673	8673		21.702	0	1	286800			89314	9309	62117	62219	99385	99385					0.06803227582213367
WALSVLYF	8	Unmodified	_WALSVLYF_					0	0	0			REV__ENST00000548554.1_1_12:51384532-51385416:-|nuORF	REV__ENST00000548554.1_1_12:51384532-51385416:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.788330078125	2	499.770929	997.527304	-0.45473	-0.00022726	3.5897	0.001794	3.135	0.0015668	499.77225775095616	21.37	0.48548	21.28	21.059	21.545	-0.090092					14	9	2	0	0	0	0.027866	1	674	674		28.254	0	1	75606	+		89315	34880	62118	62220	99386	99386					0.028441609082278774
WALSVLYF	8	Unmodified	_WALSVLYF_					0	0	0			REV__ENST00000548554.1_1_12:51384532-51385416:-|nuORF	REV__ENST00000548554.1_1_12:51384532-51385416:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	499.770929	997.527304	0.37255	0.00018619	10.365	0.0051799	10.737	0.0053661	499.7772372345356	21.675	0.19387	21.498	21.397	21.591	-0.17721	0.14526	0.0054581	NaN	44.531	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4200.6	+		89316	34880	62118	62220							0.028441609082278774
WAMTTPHSL	9	Unmodified	_WAMTTPHSL_					0	0	0			REV__ENST00000372133.7_1_6:43639307-43639502:-|nuORF	REV__ENST00000372133.7_1_6:43639307-43639502:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.3267211914062	2	522.252577	1042.4906	-0.89558	-0.00046772	4.0704	0.0021258	3.1749	0.0016581	522.755959284706	55.053	0.16968	55.151	55.05	55.22	0.098015					6	4	2	0	0	0	0.024354	1	5993	5993		47.916	3.7988	1	38426	+		89317	31191	62119	62221	99387	99387					-0.028944589799721143
WANALLALL	9	Unmodified	_WANALLALL_					0	0	0			REV__ENST00000535220.1_1_12:6933100-6934099:+|nuORF	REV__ENST00000535220.1_1_12:6933100-6934099:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2872619628906	2	492.797478	983.580402	-1.1659	-0.00057457	-3.3918	-0.0016715	-4.5578	-0.0022461	492.79570655984537	29.975	0.73824	30.054	29.685	30.424	0.078344					28	17	2	0	0	0	0.024535	1	1793	1793		25.45	4.5032	1	203020	+		89318	29027	62120	62222	99388	99388					0.08795538690890226
WAPGPGVPL	9	Unmodified	_WAPGPGVPL_					0	0	0			REV__ENSG00000184675|ENST00000374869|AMER1	REV__ENSG00000184675|ENST00000374869|AMER1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	448.2352294921875	2	447.247621	892.480688	-0.022352	-9.997E-06	-4.4697	-0.001999	-4.492	-0.002009	447.2454746908367	37.189	0.8689	37.221	36.918	37.787	0.032269					40	22	2	0	0	0	0.024389	1	3032	3032		29.842	12.477	1	589980	+		89319	27693	62121	62223	99389	99389					0.030147210769428057
WAQCVDENECA	11	Unmodified	_WAQCVDENECA_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	423.16217041015625	3	423.162117	1266.46452	-0.08186	-3.464E-05	0.56148	0.0002376	0.47962	0.00020296	423.16224418148715	31.407	0.73112	31.166	30.834	31.565	-0.24109					50	18	4	0	0	0	0.99648	1	2077	2077		37.6	9.2161	1	1636000			89320	5560	62122	62224	99390	99390					-0.15805141004443612
WAQCVDENECA	11	Unmodified	_WAQCVDENECA_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	423.1618957519531	3	423.162117	1266.46452	-0.01316	-5.5688E-06	0.37877	0.00016028	0.36561	0.00015471	423.16214116104175	31.309	0.76871	31.157	30.846	31.615	-0.15231					49	19	4	0	0	0	1.017	2	2041	2041;2052		33.039	10.478	1	1558900			89321	5560	62122	62224	99391;99392	99391					-0.15805141004443612
WAQTVLRW	8	Unmodified	_WAQTVLRW_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.2342529296875	2	530.290351	1058.56615	-0.21783	-0.00011551	1.7255	0.00091502	1.5077	0.00079951	530.2908374938745	67.639	0.42851	67.401	67.201	67.629	-0.23814					16	9	2	0	0	0	0.027866	1	7759	7759		55.504	7.5447	1	154490			89322	4023	62123	62225	99393	99393					0.03920886262608292
WARFIPGR	8	Unmodified	_WARFIPGR_					0	0	0		ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.8066101074219	2	501.785236	1001.55592	0.96564	0.00048454	-0.025613	-1.2852E-05	0.94002	0.00047169	501.78510282822907	59.878	0.96694	59.681	59.173	60.14	-0.19742					34	24	2	0	0	0	0.027866	1	6663	6663		18.324	2.6826	1	370280			89323	10096	62124	62226	99394	99394					0.05520323328039467
WARWLWRRLFK	11	Unmodified	_WARWLWRRLFK_					0	0	0		ENST00000491791.1_1_3:49377935-49378118:-|nuORF	ENST00000491791.1_1_3:49377935-49378118:-|nuORF	ENST00000491791.1_1_3:49377935-49378118:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2837524414062	3	539.980762	1616.92046	-0.43616	-0.00023552	2.025	0.0010934	1.5888	0.00085792	539.9823281460242	41.934	0.54854	41.811	41.527	42.076	-0.12299					32	14	3	0	0	0	0.024886	1	3709	3709		10.104	3.783	1	135260			89324	15470	62125	62227	99395	99395					0.13667190415549157
WATAYFDV	8	Unmodified	_WATAYFDV_					0	0	0		nc|ENSG00000172478|Q08AI8-3|MAB21L4;nc|ENSG00000172478|Q08AI8-2|MAB21L4;ENSG00000172478|ENST00000388934|MAB21L4	nc|ENSG00000172478|Q08AI8-3|MAB21L4	nc|ENSG00000172478|Q08AI8-3|MAB21L4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	486.79656982421875	2	486.726718	971.438883	-0.66174	-0.00032209	-3.487	-0.0016972	-4.1488	-0.0020193	486.7248795223009	59.624	0.78239	59.71	59.351	60.134	0.085682					38	20	2	0	0	0	0.027866	1	6695	6695		57.811	17.239	1	561460			89325	8281	62126	62228	99396	99396					-0.04797879402246963
WATLYIYFAS	10	Unmodified	_WATLYIYFAS_					0	0	0			REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	REV__ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.9001159667969	3	412.209613	1233.60701	-0.60111	-0.00024778	3.2865	0.0013547	2.6854	0.0011069	412.2109376457365	28.222	1.1135	28.053	27.528	28.641	-0.16897					33	26	2	0	0	0	0.03519	1	1686	1686		40.058	13.995	1	219510	+		89326	27808	62127	62229	99397	99397					-0.0004481720841340575
WATQKVCWK	9	Unmodified	_WATQKVCWK_					0	0	0		ENST00000394339.2_1_4:124320859-124322718:+|nuORF	ENST00000394339.2_1_4:124320859-124322718:+|nuORF	ENST00000394339.2_1_4:124320859-124322718:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	575.8238525390625	2	575.297319	1148.58008	-0.68675	-0.00039508	1.1501	0.00066165	0.46335	0.00026656	575.2978458114727	43.941	0.6327	43.978	43.743	44.375	0.0369					44	17	3	0	0	0	0.024397	1	4134	4134		47.657	12.039	1	3516900			89327	13486	62128	62230	99398	99398					0.011737956993783882
WAVASPCAI	9	Unmodified	_WAVASPCAI_					0	0	0		ENSG00000170412|ENST00000392627|GPRC5C;nc|ENSG00000170412|Q9NQ84-2|GPRC5C	ENSG00000170412|ENST00000392627|GPRC5C	ENSG00000170412|ENST00000392627|GPRC5C	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	459.2301025390625	2	459.231113	916.447674	-0.42273	-0.00019413	-3.7058	-0.0017018	-4.1285	-0.0018959	459.2294193423584	28.944	0.76664	28.947	28.547	29.314	0.0031357					47	18	4	0	0	0	0.64155	1	1733	1733		50.025	2.1089	1	1933600			89328	8036	62129	62231	99399	99399					-0.013892290374201366
WAYLFNKVD	9	Unmodified	_WAYLFNKVD_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.2932739257812	2	578.295299	1154.57605	0.64454	0.00037274	-3.3779	-0.0019534	-2.7333	-0.0015807	578.2927912671993	99.091	0.79159	98.956	98.457	99.249	-0.13526					21	19	2	0	0	0	0.85329	1	12271	12271		35.618	2.8059	1	149930	+		89329	23584	62130	62232	99400	99400					0.004940294773405185
WCCGSMRTW	9	Unmodified	_WCCGSMRTW_					0	0	0		ENST00000247005.7_1_19:18979374-18979476:-|nuORF	ENST00000247005.7_1_19:18979374-18979476:-|nuORF	ENST00000247005.7_1_19:18979374-18979476:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.82763671875	2	565.222439	1128.43033	-0.41106	-0.00023234	2.6117	0.0014762	2.2006	0.0012439	565.2236645034703	31.045	0.53205	30.804	30.541	31.073	-0.24109					27	12	3	0	0	0	0.024447	1	2053	2053		32.812	9.7699	1	433630			89330	11324	62131	62233	99401	99401					-0.12875215906365156
WCWVNYLL	8	Unmodified	_WCWVNYLL_					0	0	0		nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE;nc|ENSG00000179397|Q5SY80-3|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	nc|ENSG00000179397|Q5SY80-2|CATSPERE	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.7686767578125	2	548.767863	1095.52117	-1.145	-0.00062835	3.4323	0.0018836	2.2873	0.0012552	548.7695054172259	83.662	1.1546	83.662	83.309	84.463	0					60	26	4	0	0	0	0.67787	1	10487	10487		69.093	2.6637	1	1555200			89331	8895	62132	62234	99402	99402					-0.022766805949459012
WDFYTEET	8	Unmodified	_WDFYTEET_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.9129638671875	2	545.72183	1089.42911	-0.62142	-0.00033912	-2.9867	-0.0016299	-3.6081	-0.001969	545.7199981489674	27.05	0.76478	26.882	26.638	27.402	-0.16816					25	17	2	0	0	0	0.027866	1	1477	1477		33.516	0	1	128000			89332	2157	62133	62235	99403	99403					-0.1120311219829091
WDGARTTLT	9	Unmodified	_WDGARTTLT_					0	0	0		ENST00000560131.1_1_15:63356108-63358095:+|nuORF	ENST00000560131.1_1_15:63356108-63358095:+|nuORF	ENST00000560131.1_1_15:63356108-63358095:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.2855224609375	2	510.759081	1019.50361	-0.49777	-0.00025424	-2.5933	-0.0013246	-3.0911	-0.0015788	510.7584476970023	56.766	0.99928	56.766	56.497	57.496	0					39	27	2	0	0	0	0.024374	1	6417	6417		40.778	12.896	1	114100			89333	16795	62134	62236	99404	99404					-0.00536304596255377
WDGEEKSFY	9	Unmodified	_WDGEEKSFY_					0	0	0			REV__ENST00000540743.1_1_12:10010036-10015170:-|nuORF	REV__ENST00000540743.1_1_12:10010036-10015170:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	580.75	2	580.748379	1159.4822	-0.541	-0.00031418	3.4851	0.002024	2.9441	0.0017098	580.7503305153966	73.686	0.5873	73.496	73.16	73.748	-0.19027					40	14	4	0	0	0	0.23085	1	8669	8669		84.916	26.134	1	1540700	+		89334	21878	62135	62237	99405	99405					-0.09115734415604493
WDLQGQNIAAH	11	Unmodified	_WDLQGQNIAAH_					0	0	0			REV__MINK1-ALOX12|1|fusion	REV__MINK1-ALOX12|1|fusion	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	626.80712890625	2	626.807094	1251.59963	-0.37953	-0.00023789	-1.0505	-0.00065847	-1.43	-0.00089636	626.8067608866869	110.19	1.1048	110.19	109.85	110.96	0.0059204					73	37	3	0	0	0	1.0685	1	13882	13882		19.997	3.5236	1	106000	+		89335	21765	62136	62238	99406	99406					-0.016101567561236152
WDLVRAPGL	9	Unmodified	_WDLVRAPGL_					0	0	0			REV__ENST00000337304.2_1_22:39916672-39916864:+|nuORF	REV__ENST00000337304.2_1_22:39916672-39916864:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.7881469726562	2	513.790184	1025.56581	-0.49902	-0.00025639	-3.9471	-0.002028	-4.4461	-0.0022844	513.7880377377146	27.755	1.0585	27.742	27.391	28.449	-0.012983					62	26	3	0	0	0	0.64155	1	1540	1540		50.025	0.58299	1	2847200	+		89336	30562	62137	62239	99407	99407					0.05405466542742943
WDMLVNIVEK	10	Unmodified	_WDMLVNIVEK_					0	0	0		ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	ENSG00000108578|ENST00000261714|BLMH	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	416.22088623046875	3	416.221525	1245.64274	-0.38149	-0.00015879	-1.3752	-0.00057238	-1.7567	-0.00073116	416.22074792070606	24.459	2.0792	24.243	23.822	25.901	-0.2151					130	48	4	0	0	0	1.037	1	1092	1092		41.08	2.3265	1	2424200			89337	2911	62138	62240	99408	99408					0.02974896976911623
WDPRRKNCS	9	Unmodified	_WDPRRKNCS_					0	0	0		nc|ENSG00000105492|O43699-5|SIGLEC6;nc|ENSG00000105492|O43699-4|SIGLEC6;nc|ENSG00000105492|O43699-2|SIGLEC6;ENST00000496422.5_1_19:52032900-52035046:-|nuORF;nc|ENSG00000105492|O43699-6|SIGLEC6;ENST00000489837.1_1_19:52032900-52035046:-|nuORF;nc|ENSG00000105492|O43699-3|SIGLEC6;ENSG00000105492|ENST00000425629|SIGLEC6	nc|ENSG00000105492|O43699-5|SIGLEC6	nc|ENSG00000105492|O43699-5|SIGLEC6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	581.8089599609375	2	581.282731	1160.55091	-0.30473	-0.00017713	-1.6256	-0.00094492	-1.9303	-0.0011221	581.2816988667715	17.909	0.2953	17.767	17.602	17.897	-0.14278					13	5	3	0	0	0	0.024541	1	208	208		23.042	10.836	1	59820			89338	18147	62139	62241	99409	99409					-0.02294348596888085
WDPRVQGD	8	Unmodified	_WDPRVQGD_					0	0	0		chr15:41988156-41989075|226|11.28|0.4|4.81|-|0|PLA2G4E,None|1	chr15:41988156-41989075|226|11.28|0.4|4.81|-|0|PLA2G4E,None|1	chr15:41988156-41989075|226|11.28|0.4|4.81|-|0|PLA2G4E,None|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	485.7602233886719	2	486.730323	971.446094	0.54258	0.00026409	-1.4757	-0.00071825	-0.9331	-0.00045417	486.7296872594688	72.301	0.42073	72.02	71.882	72.303	-0.28124					13	10	2	0	0	0	0.027866	1	8792	8792		71.296	5.4925	1	65594			89339	344	62140	62242	99410	99410					-0.04077146801807885
WDRLPGDP	8	Unmodified	_WDRLPGDP_					0	0	0		ENST00000527996.5_1_1:109656894-109745573:+|nuORF;ENST00000490758.6_1_1:109656894-109730836:+|nuORF	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	ENST00000527996.5_1_1:109656894-109745573:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	477.8037414550781	2	478.235242	954.45593	0.063104	3.0178E-05	4.3906	0.0020997	4.4537	0.0021299	478.23724855468856	52.432	0.19793	52.524	52.404	52.602	0.091938					6	4	2	0	0	0	0.027866	1	5538	5538		29.15	3.6994	1	29327			89340	16173	62141	62243	99411	99411					-0.023119587964288257
WDRRHGQI	8	Unmodified	_WDRRHGQI_					0	0	0			REV__ENST00000571814.1_2_17:81042314-81042740:+|nuORF	REV__ENST00000571814.1_2_17:81042314-81042740:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	533.8048095703125	2	534.278306	1066.54206	-0.98804	-0.00052789	-1.4859	-0.00079387	-2.4739	-0.0013218	534.2777935619897	45.323	0.61847	45.174	44.796	45.415	-0.1488					31	17	3	0	0	0	0.027866	1	4365	4365		76.847	9.353	1	313660	+		89341	35415	62142	62244	99412	99412					0.011450458289573362
WEAQQTSI	8	Unmodified	_WEAQQTSI_					0	0	0			REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	REV__ENST00000554913.5_1_14:104163972-104164347:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.7325439453125	2	481.732532	961.45051	0.42998	0.00020713	-0.62961	-0.00030331	-0.19964	-9.6171E-05	481.7322445153537	57.458	2.5706	57.283	56.7	59.27	-0.1749					147	70	5	0	0	0	0.44658	1	6409	6409		90.777	3.0802	1	19184000	+		89342	34998	62143	62245	99413	99413					-0.03175682378889633
WEARDQEQD	9	Unmodified	_WEARDQEQD_					0	0	0		ENST00000290902.9_1_4:1161287-1161425:-|nuORF	ENST00000290902.9_1_4:1161287-1161425:-|nuORF	ENST00000290902.9_1_4:1161287-1161425:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	587.771728515625	2	588.749441	1175.48433	-0.64842	-0.00038175	-0.004631	-2.7265E-06	-0.65305	-0.00038448	588.7493430290343	32.964	0.44818	32.763	32.489	32.937	-0.20019					18	10	2	0	0	0	0.024457	1	2310	2310		37.159	13.636	1	301220			89343	11790	62144	62246	99414	99414					-0.0963930567781972
WEECDRELY	9	Unmodified	_WEECDRELY_					0	0	0		ENST00000307271.3_1_7:150171706-150174432:+|nuORF	ENST00000307271.3_1_7:150171706-150174432:+|nuORF	ENST00000307271.3_1_7:150171706-150174432:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	621.760009765625	2	621.75842	1241.50229	0.36142	0.00022471	2.1053	0.001309	2.4667	0.0015337	621.7597054952719	70.932	1.0096	70.66	70.427	71.437	-0.27184					60	24	4	0	0	0	0.36105	1	8270	8270		68.485	0.99103	1	3860900			89344	12009	62145	62247	99415	99415					-0.10880306747299073
WEEQPLTE	8	Unmodified	_WEEQPLTE_					0	0	0			REV__ENSG00000179832|ENST00000326134|MROH1	REV__ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.3004150390625	2	516.237647	1030.46074	-0.43292	-0.00022349	3.194	0.0016488	2.761	0.0014254	516.2391658398044	33.45	1.7642	33.506	32.8	34.564	0.056568					60	45	2	0	0	0	0.027866	1	2462	2462		53.351	5.6941	1	122320	+		89345	27294	62146	62248	99416	99416					-0.053271194443368586
WELLLKSVHL	10	Unmodified	_WELLLKSVHL_					0	0	0		ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENST00000590651.1_1_19:32949377-32959920:+|nuORF	ENSG00000178904|ENST00000392250|DPY19L3	ENSG00000178904|ENST00000392250|DPY19L3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.3721313476562	2	619.368798	1236.72304	-0.16048	-9.9398E-05	3.5991	0.0022291	3.4386	0.0021297	619.3709137357778	100.17	0.80694	100.04	99.717	100.52	-0.12504					57	24	3	0	0	0	1.0992	1	12477	12477		32.812	4.7309	1	1136500			89346	8842	62147	62249	99417	99417					0.11415126362271621
WEPNENVVDGT	11	Unmodified	_WEPNENVVDGT_					0	0	0			REV__ENSG00000171302|ENST00000392446|CANT1	REV__ENSG00000171302|ENST00000392446|CANT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.5218200683594	3	420.522808	1258.5466	-0.073561	-3.0934E-05	-2.1555	-0.00090645	-2.2291	-0.00093739	420.52186899003595	24.639	0.81821	24.464	24.089	24.907	-0.17484					59	18	5	0	0	0	1.0327	1	1103	1103		29.551	2.801	1	855430	+		89347	26559	62148	62250	99418	99418					-0.07233579329476925
WERMSQEPPQ	10	Unmodified	_WERMSQEPPQ_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;PDGFRB|p.M754Cfs*4|1|0.19|ENSG00000113721|chr5:150121965-150121965|G/-|frameshift_variant;nc|ENSG00000113721|P09619-2|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.9344787597656	3	429.8644	1286.57137	-0.26158	-0.00011244	-4.489	-0.0019296	-4.7506	-0.0020421	429.8623514064819	28.675	0.72286	28.506	28.131	28.854	-0.16897					20	16	2	0	0	0	0.03519	1	1649	1649		35.178	10.052	1	35219			89348	3322	62149	62251	99419	99419					-0.06045222727743749
WERRLIKKP	9	Unmodified	_WERRLIKKP_					0	0	0		ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	ENSG00000112787|ENST00000680143|FBRSL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	408.9227294921875	3	409.25578	1224.74551	0.46562	0.00019056	3.5564	0.0014555	4.022	0.001646	409.25758061531343	103.2	0.91304	103.2	102.81	103.73	0.0054245					38	22	3	0	0	0	0.024523	1	13210	13210		16.717	1.3843	1	375400			89349	3240	62150	62252	99420	99420					0.14212770550557252
WERRRARWHWR	11	Unmodified	_WERRRARWHWR_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.7586975097656	4	424.480446	1693.89268	-0.023214	-9.8537E-06	-3.3789	-0.0014343	-3.4021	-0.0014441	424.7297297759342	31.295	0.69039	31.054	30.875	31.565	-0.24109					23	17	2	0	0	0	0.024904	1	2126	2126		1.4188	0.18682	1	82058			89350	17576	62151	62253	99421	99421					0.07348680208042424
WFCSSWLN	8	Unmodified	_WFCSSWLN_					0	0	0			REV__ENST00000564349.5_1_16:20907668-20911664:-|nuORF	REV__ENST00000564349.5_1_16:20907668-20911664:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	521.7679443359375	2	521.726195	1041.43784	-0.43232	-0.00022555	0.5358	0.00027954	0.10348	5.399E-05	521.726305444866	56.096	0.47147	55.94	55.666	56.138	-0.15601					21	12	2	0	0	0	0.027866	1	6165	6165		30.504	2.4222	1	259490	+		89351	35244	62152	62254	99422	99422					-0.0812241704279586
WFGFFCGF	8	Unmodified	_WFGFFCGF_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENST00000560161.1_1_15:50178110-50190397:-|nuORF;ENST00000561385.5_1_15:50189347-50194027:-|nuORF;ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2	ENSG00000104043|ENST00000284509|ATP8B4;ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.7140197753906	2	505.715099	1009.41565	-0.16385	-8.2861E-05	-1.289	-0.00065188	-1.4529	-0.00073474	505.7142495519542	31.492	4.3224	31.251	29.658	33.98	-0.24109					222	105	3	0	0	0	0.9599	1	2174	2174		43.626	2.8479	1	1926200			89352	2538;5659	62153	62255	99423	99423					-0.08868596720560618
WFGFFCGF	8	Unmodified	_WFGFFCGF_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENST00000560161.1_1_15:50178110-50190397:-|nuORF;ENST00000561385.5_1_15:50189347-50194027:-|nuORF;ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2	ENSG00000104043|ENST00000284509|ATP8B4;ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.71435546875	2	505.715099	1009.41565	-0.33266	-0.00016823	-1.4762	-0.00074653	-1.8088	-0.00091476	505.71433724954466	31.485	3.9418	31.3	29.477	33.419	-0.18503					250	95	4	0	0	0	0.9599	1	2076	2076		43.626	1.2299	1	1825100			89353	2538;5659	62153	62255	99424	99424					-0.08868596720560618
WFHIVFVL	8	Unmodified	_WFHIVFVL_					0	0	0		ENSG00000085231|ENST00000380822|AK6;nc|ENSG00000085231|Q9Y3D8-2|AK6	ENSG00000085231|ENST00000380822|AK6	ENSG00000085231|ENST00000380822|AK6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.8013916015625	2	530.802563	1059.59057	0.067051	3.5591E-05	-1.9526	-0.0010364	-1.8855	-0.0010008	530.801319543455	101.17	0.88271	101	100.77	101.65	-0.17178					47	19	3	0	0	0	1.0241	1	12582	12582		33.493	3.1753	1	1205000			89354	1783	62154	62256	99425	99425					0.06316146416133961
WFHQVFVS	8	Unmodified	_WFHQVFVS_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.28515625	2	525.263802	1048.51305	-0.35573	-0.00018685	-1.8966	-0.00099622	-2.2523	-0.0011831	525.2625868064495	66.184	0.47948	65.936	65.607	66.086	-0.24706					13	11	2	0	0	0	0.027866	1	7591	7591		31.955	0	1	103570			89355	9482;18594	62155	62257	99426	99426					-0.009264915200674295
WFHVDKLSS	9	Unmodified	_WFHVDKLSS_					0	0	0		ENSG00000147419|ENST00000356537|CCDC25	ENSG00000147419|ENST00000356537|CCDC25	ENSG00000147419|ENST00000356537|CCDC25	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.7827758789062	2	559.785099	1117.55564	-0.51084	-0.00028596	-3.6347	-0.0020347	-4.1455	-0.0023206	559.783063625684	30.925	1.2074	30.747	30.083	31.29	-0.17818					81	29	4	0	0	0	0.62163	1	2038	2038		51.335	1.8939	1	7513400			89356	5963	62156	62258	99427	99427					0.0015685881753597641
WFIKLNSIVK	10	Unmodified	_WFIKLNSIVK_					0	0	0			REV__ENST00000534658.5_1_6:134494506-134495951:-|nuORF	REV__ENST00000534658.5_1_6:134494506-134495951:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	624.3761596679688	2	624.379166	1246.74378	0.38145	0.00023817	1.1712	0.0007313	1.5527	0.00096947	624.379794589076	105.22	0.4373	105.22	105.02	105.46	0.00096893					30	13	3	0	0	0	1.1237	1	13487	13487		23.042	2.0956	1	632940	+		89357	34646	62157	62259	99428	99428					0.1302771674190808
WFILLSDGL	9	Unmodified	_WFILLSDGL_					0	0	0			REV__ENST00000582978.5_1_18:10526099-10540502:+|nuORF	REV__ENST00000582978.5_1_18:10526099-10540502:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2927856445312	2	532.294768	1062.57498	-0.57303	-0.00030502	1.9496	0.0010378	1.3765	0.00073273	532.2952952315607	104.18	0.5679	104.18	103.9	104.47	0					26	12	3	0	0	0	0.52323	1	13373	13373		57.811	20.652	1	162330	+		89358	35548	62158	62260	99429	99429					0.04619815108412695
WFINMALE	8	Unmodified	_WFINMALE_					0	0	0		ENST00000305536.10_1_X:129547000-129547084:+|nuORF	ENST00000305536.10_1_X:129547000-129547084:+|nuORF	ENST00000305536.10_1_X:129547000-129547084:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.2539672851562	2	512.252046	1022.48954	-0.70824	-0.0003628	3.8056	0.0019495	3.0974	0.0015867	512.2538720129261	80.65	0.92682	80.65	80.373	81.299	0					50	22	3	0	0	0	1.0574	1	10032	10032		26.796	0.10319	1	842220			89359	11987	62159	62261	99430	99430					-0.020806733488939244
WFLASSRVL	9	Unmodified	_WFLASSRVL_					0	0	0			REV__ENST00000383791.7_1_3:15345692-15345737:-|nuORF	REV__ENST00000383791.7_1_3:15345692-15345737:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8056640625	2	539.805834	1077.59712	-0.33993	-0.0001835	-0.18399	-9.932E-05	-0.52392	-0.00028282	539.8055183012792	41.271	1.2776	41.271	40.944	42.222	0					90	36	4	0	0	0	0.19099	1	3688	3688		90.37	21.583	1	5442000	+		89360	31558	62160	62262	99431	99431					0.06142039576843672
WFLIAAVDL	9	Unmodified	_WFLIAAVDL_					0	0	0			REV__ENST00000368690.7_1_1:153606535-153606622:+|nuORF	REV__ENST00000368690.7_1_1:153606535-153606622:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	524.2969970703125	2	524.29731	1046.58007	-0.48822	-0.00025597	0.40626	0.000213	-0.08196	-4.2972E-05	524.2974061099324	100.39	1.4136	100.39	99.871	101.28	0					101	34	5	0	0	0	0.52323	1	12901	12901		57.811	1.0902	1	3300600	+		89361	31066	62161	62263	99432	99432					0.05864118971044263
WFLIAAVDL	9	Unmodified	_WFLIAAVDL_					0	0	0			REV__ENST00000368690.7_1_1:153606535-153606622:+|nuORF	REV__ENST00000368690.7_1_1:153606535-153606622:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2969970703125	2	524.29731	1046.58007	0.31866	0.00016707	-0.2959	-0.00015514	0.022758	1.1932E-05	524.2970509151143	100.44	1.3456	100.44	100.01	101.36	-0.0050812					96	34	5	0	0	0	0.4855	1	12747	12747		60.294	5.5176	1	3281700	+		89362	31066	62161	62263	99433	99433					0.05864118971044263
WFMFLSSV	8	Oxidation (M)	_WFM(Oxidation (M))FLSSV_		WFM(1)FLSSV		WFM(75)FLSSV	0	0	1			REV__ENST00000450385.5_1_7:94257647-94259117:-|nuORF	REV__ENST00000450385.5_1_7:94257647-94259117:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	516.7481079101562	2	516.746596	1031.47864	0.38612	0.00019953	1.848	0.00095497	2.2342	0.0011545	516.747421130384	63.713	0.98812	63.455	63.162	64.15	-0.25824					74	25	4	0	0	0	0.61897	1	7219	7219		74.517	8.7134	1	4591400	+		89363	32700	62162	62264	99434	99434		896			-0.03584075723142632
WFRRFRQRLHP	11	Unmodified	_WFRRFRQRLHP_					0	0	0		ENST00000243918.9_1_20:43991669-43991846:+|nuORF	ENST00000243918.9_1_20:43991669-43991846:+|nuORF	ENST00000243918.9_1_20:43991669-43991846:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	400.886474609375	4	400.478643	1597.88547	0.23926	9.5817E-05	1.6302	0.00065287	1.8695	0.00074869	400.4794312824606	54.889	0.58992	54.743	54.533	55.123	-0.14609					24	15	2	0	0	0	0.024888	1	5844	5844		6.001	2.7897	1	163530			89364	11297	62163	62265	99435	99435					0.11043947607640803
WFRVTFDY	8	Unmodified	_WFRVTFDY_					0	0	0			REV__ENSG00000112357|ENST00000318471|PEX7	REV__ENSG00000112357|ENST00000318471|PEX7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.2769775390625	2	567.274367	1132.53418	0.58416	0.00033138	2.5924	0.0014706	3.1765	0.001802	567.2752204241652	82.633	1.6741	82.413	82.043	83.717	-0.22015					68	38	3	0	0	0	0.81662	1	9953	9953		57.811	1.0902	1	822000	+		89365	21998	62164	62266	99436	99436					-0.026785262112070995
WFSIHQIVY	9	Unmodified	_WFSIHQIVY_					0	0	0			REV__ENST00000409998.5_1_2:188250324-188252072:-|nuORF	REV__ENST00000409998.5_1_2:188250324-188252072:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.8076171875	2	596.811116	1191.60768	-0.4379	-0.00026134	-4.1523	-0.0024781	-4.5902	-0.0027395	596.8085109661993	97.85	1.2854	97.685	97.351	98.637	-0.16521					71	30	4	0	0	0	0.77768	1	12153	12153		40.778	1.5253	1	1500900	+		89366	31978	62165	62267	99437	99437					0.019540222312798505
WFTIGVEAL	9	Unmodified	_WFTIGVEAL_					0	0	0			REV__ENST00000482048.1_1_3:183962900-183966716:-|nuORF	REV__ENST00000482048.1_1_3:183962900-183966716:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.2974243164062	2	518.279118	1034.54368	0.18055	9.3573E-05	0.71013	0.00036805	0.89068	0.00046162	518.2797026263219	102.51	0.3123	102.39	102.28	102.59	-0.12666					8	6	2	0	0	0	0.024	1	12767	12767		65.803	0	1	49288	+		89367	28773	62166	62268	99438	99438					0.027792420743253388
WFTIVEKI	8	Unmodified	_WFTIVEKI_					0	0	0			REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.2973022460938	2	518.29731	1034.58007	-0.78256	-0.0004056	0.53819	0.00027894	-0.24437	-0.00012666	518.2976765003833	102.67	3.4549	102.67	101.08	104.53	0					224	81	6	0	0	0	0.53523	3	13128	13128;13140;13152		82.305	11.009	1	63214000	+		89368	32095	62167	62269	99439;99440;99441	99439					0.06416118971037577
WFTIVEKI	8	Unmodified	_WFTIVEKI_					0	0	0			REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2975463867188	2	518.29731	1034.58007	-0.17628	-9.1363E-05	-0.20948	-0.00010857	-0.38576	-0.00019994	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.53523	2	13106	13106;13130		82.305	5.4584	1	66134000	+		89369	32095	62167	62269	99442;99443	99442					0.06416118971037577
WFTIVEKI	8	Unmodified	_WFTIVEKI_					0	0	0			REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2973022460938	2	518.29731	1034.58007	-0.1979	-0.00010257	-0.072982	-3.7826E-05	-0.27089	-0.0001404	518.2973986074476	102.7	2.9604	102.7	101.67	104.63	-0.0046082					228	70	5	0	0	0	0.42327	2	13060	13060;13146		94.006	5.3636	1	70878000	+		89370	32095	62167	62269	99444;99445	99444					0.06416118971037577
WFTIVEKI	8	Unmodified	_WFTIVEKI_					0	0	0			REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	REV__ENST00000417455.1_1_10:44101202-44101391:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.29736328125	2	518.29731	1034.58007	0.33697	0.00017465	-0.73697	-0.00038197	-0.4	-0.00020732	518.2968087323576	102.58	1.456	102.41	101.78	103.24	-0.17178					76	35	4	0	0	0	0.53523	1	12731	12731		82.305	5.4584	1	4621500	+		89371	32095	62167	62269	99446	99446					0.06416118971037577
WFTMSFSYY	9	Unmodified	_WFTMSFSYY_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	616.2603759765625	2	616.260068	1230.50558	-0.406	-0.0002502	0.031386	1.9342E-05	-0.37462	-0.00023086	616.2599569775998	56.301	1.1392	56.085	55.808	56.948	-0.21607					70	29	4	0	0	0	0.36105	1	6096	6096		68.485	18.46	1	1494800			89372	6723	62168	62270	99447	99447					-0.10045011902616352
WFTMSFSYY	9	Unmodified	_WFTMSFSYY_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	616.2606201171875	2	616.260068	1230.50558	-0.49632	-0.00030586	0.13993	8.6233E-05	-0.35639	-0.00021963	616.2600551540942	56.331	0.93178	56.112	55.811	56.743	-0.21971					60	23	5	0	0	0	0.43973	1	6085	6085		63.306	3.188	1	1377400			89373	6723	62168	62270	99448	99448					-0.10045011902616352
WFTNSWVLK	9	Unmodified	_WFTNSWVLK_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	590.808837890625	2	590.811116	1179.60768	-0.53834	-0.00031806	-3.1899	-0.0018846	-3.7282	-0.0022027	590.809136025003	59.001	1.5765	59.001	58.679	60.256	0					108	42	5	0	0	0	0.20967	1	6724	6724		87.754	8.0417	1	5641400			89374	6965	62169	62271	99449	99449					0.02506022231273164
WFVGSLLLV	9	Unmodified	_WFVGSLLLV_					0	0	0		ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	518.29736328125	2	517.307678	1032.6008	0.31244	0.00016163	1.8854	0.00097533	2.1978	0.001137	517.3085616922041	102.65	0.39434	102.48	102.24	102.64	-0.17034					13	8	2	0	0	0	0.024386	1	12731	12731		42.474	0	1	93123			89375	9343	62170	62272	99450	99450					0.08580709350690086
WFWSFFRQV	9	Unmodified	_WFWSFFRQV_					0	0	0			REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	434.7801208496094	3	434.885464	1301.63456	1.8541	0.00080631	-2.4669	-0.0010728	-0.61282	-0.0002665	435.2177456680143	36.365	0.23864	36.167	36.054	36.292	-0.19829					10	5	2	0	0	0	0.024541	1	2830	2830		23.523	6.8053	1	79689	+		89376	35176	62171	62273	99451	99451					-0.0041886915755640075
WGACFAYIV	9	Unmodified	_WGACFAYIV_					0	0	0		nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3;ENSG00000139508|ENST00000266943|SLC46A3;nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3089599609375	2	515.246763	1028.47897	-0.56335	-0.00029027	0.5477	0.0002822	-0.015651	-8.0639E-06	515.2469910630084	60.364	0.32352	60.188	59.998	60.322	-0.1761					13	7	3	0	0	0	0.024475	1	6734	6734		29.842	8.8946	1	71808			89377	5338	62172	62274	99452	99452					-0.03412656003342818
WGACFAYIV	9	Unmodified	_WGACFAYIV_					0	0	0		nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3;ENSG00000139508|ENST00000266943|SLC46A3;nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	515.246763	1028.47897	0.022017	1.1344E-05	2.5845	0.0013317	2.6065	0.001343	515.2477604953255	60.135	0.37914	60.135	59.914	60.294	0	-0.026513	0.00071538	NaN	29.842	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179510			89378	5338	62172	62274							-0.03412656003342818
WGCCRIII	8	Unmodified	_WGCCRIII_					0	0	0			REV__ENST00000379104.6_1_5:131546105-131546186:-|nuORF	REV__ENST00000379104.6_1_5:131546105-131546186:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.7773132324219	2	482.248783	962.483013	-0.29474	-0.00014214	-0.68312	-0.00032943	-0.97786	-0.00047157	482.2485364625818	45.059	0.45367	45.059	44.793	45.246	0					17	12	2	0	0	0	0.027866	1	4312	4312		35.201	0	1	105430	+		89379	31427	62173	62275	99453	99453					0.0002711021875256847
WGDKKVICN	9	Unmodified	_WGDKKVICN_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.7748413085938	2	531.773677	1061.5328	-0.26972	-0.00014343	2.6167	0.0013915	2.3469	0.001248	531.7752879999998	106.43	0.76709	106.43	106.09	106.86	-0.0013123					50	25	3	0	0	0	0.70156	1	13650	13650		45.972	1.8554	1	614130			89380	5189	62174	62276	99454	99454					0.004495164283980557
WGDKKVICN	9	Unmodified	_WGDKKVICN_					0	0	0		IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant;ENSG00000138002|ENST00000260570|IFT172;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;ENST00000507184.5_1_2:27680991-27709067:-|nuORF	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	IFT172|p.K1585Cfs*8|1|0.09|ENSG00000138002|chr2:27446262-27446263|-/GGCA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.7754516601562	2	531.773677	1061.5328	-0.19118	-0.00010167	2.4371	0.001296	2.2459	0.0011943	531.775122620599	106.54	0.62704	106.54	106.23	106.86	0.0018311					46	21	3	0	0	0	0.87448	1	13624	13624		34.173	2.2177	1	512730			89381	5189	62174	62276	99455	99455					0.004495164283980557
WGDNCKEMV	9	Unmodified	_WGDNCKEMV_					0	0	0			REV__NCK2|p.S145N|1|0.29|ENSG00000071051|chr2:105881535-105881535|G/A|missense_variant	REV__NCK2|p.S145N|1|0.29|ENSG00000071051|chr2:105881535-105881535|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2906494140625	2	541.225702	1080.43685	-0.51333	-0.00027783	1.1652	0.00063064	0.65187	0.00035281	541.2259890808064	54.292	0.52372	54.145	53.889	54.412	-0.14723					31	14	3	0	0	0	0.024541	1	5867	5867		20.947	0	1	914600	+		89382	37266	62175	62277	99456	99456					-0.10014999473992248
WGDPHALPL	9	Unmodified	_WGDPHALPL_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2786560058594	2	503.261259	1004.50797	0.16256	8.1808E-05	3.6995	0.0018618	3.8621	0.0019436	503.76544454171096	80.043	0.21431	79.824	79.701	79.915	-0.21922					7	4	2	0	0	0	0.024541	1	9576	9576		13.775	3.5906	1	41040			89383	9159	62176	62278	99457	99457					0.005892046173244125
WGDPHALPL	9	Unmodified	_WGDPHALPL_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	503.261259	1004.50797	-1.1789	-0.0005933	8.1503	0.0041017	6.9714	0.0035084	503.26555686459886	80.056	0.20781	79.904	79.8	80.008	-0.15168	0.040351	0.0021694	NaN	13.775	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87828			89384	9159	62176	62278							0.005892046173244125
WGEKPNLS	8	Unmodified	_WGEKPNLS_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000599899.5_1_19:6677895-6682275:-|nuORF;ENST00000599668.1_1_19:6677895-6679444:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	465.268310546875	2	465.737617	929.460681	0.61501	0.00028643	3.2549	0.0015159	3.8699	0.0018024	465.7385611019917	42.355	0.70802	42.381	41.821	42.529	0.026012					26	20	2	0	0	0	0.027866	1	3805	3805		60.972	5.4677	1	129040			89385	4130	62177	62279	99458	99458					-0.006870746536719707
WGFCPIKSN	9	Unmodified	_WGFCPIKSN_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.3150024414062	2	526.25512	1050.49569	-1.0007	-0.0005266	1.519	0.00079936	0.51831	0.00027276	526.7570464539525	69.187	0.29613	68.925	68.747	69.043	-0.26166					10	6	2	0	0	0	0.024506	1	8016	8016		16.473	0	1	94719			89386	885	62178	62280	99459	99459					-0.0275415511734991
WGGMLVWY	8	Unmodified	_WGGMLVWY_					0	0	0		ENST00000520623.5_1_8:27348689-27396319:+|nuORF;nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.7982177734375	2	506.241481	1010.46841	0.071156	3.6022E-05	-0.4355	-0.00022047	-0.36434	-0.00018445	506.2402230998635	20.088	0.8228	19.92	19.423	20.246	-0.16774					19	16	2	0	0	0	0.027866	1	532	532		24.504	0	1	18847			89387	3846	62179	62281	99460	99460					-0.036406386577596095
WGGQLLLLL	9	Unmodified	_WGGQLLLLL_					0	0	0			REV__ENSG00000103522|ENST00000337929|IL21R	REV__ENSG00000103522|ENST00000337929|IL21R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.8108825683594	2	506.813128	1011.6117	-0.5416	-0.00027449	-3.4258	-0.0017362	-3.9674	-0.0020107	506.8112170970329	64.363	0.82664	64.107	63.716	64.542	-0.25563					45	20	4	0	0	0	0.33184	1	7314	7314		71.378	3.8842	1	2160000	+		89388	21391	62180	62282	99461	99461					0.10636111725011688
WGHYMTLLE	9	Unmodified	_WGHYMTLLE_					0	0	0			REV__ENST00000479598.5_1_2:190437559-190445261:-|nuORF	REV__ENST00000479598.5_1_2:190437559-190445261:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	574.800537109375	2	575.273509	1148.53247	-1.1756	-0.00067629	-3.0813	-0.0017726	-4.2569	-0.0024489	575.7731266497684	44.101	0.33413	43.881	43.672	44.006	-0.21939					10	8	2	0	0	0	0.024517	1	4079	4079		12.959	0	1	93222	+		89389	23858	62181	62283	99462	99462					-0.035859032914686395
WGIDPYGKA	9	Unmodified	_WGIDPYGKA_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.7427062988281	2	503.753267	1005.49198	-1.3332	-0.00067162	0.81081	0.00040845	-0.52243	-0.00026318	503.75343627704274	24.779	0.53675	24.732	24.487	25.024	-0.047148					27	9	5	0	0	0	0.024381	1	1071	1071		37.159	23.384	1	85735	+		89390	28147	62182	62284	99463	99463					-0.01054501619569237
WGKLNKQI	8	Unmodified	_WGKLNKQI_					0	0	0			REV__SH3PXD2B|p.E256K|1|0.35|ENSG00000174705|chr5:172353907-172353907|C/T|missense_variant	REV__SH3PXD2B|p.E256K|1|0.35|ENSG00000174705|chr5:172353907-172353907|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.7906494140625	2	493.792727	985.5709	-1.011	-0.00049923	-3.5974	-0.0017764	-4.6084	-0.0022756	493.7908941516755	24.288	1.1019	24.241	23.656	24.758	-0.047146					93	24	6	0	0	0	0.48546	1	1036	1036		86.935	4.6296	1	1236400	+		89391	37486	62183	62285	99464	99464					0.07753770405372507
WGKRKLGK	8	Unmodified	_WGKRKLGK_					0	0	0			REV__ENSG00000116539|ENST00000392403|ASH1L	REV__ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.7605895996094	2	486.808711	971.602869	-0.73756	-0.00035905	-1.1275	-0.00054889	-1.8651	-0.00090794	486.80786239782213	25.918	0.41773	25.682	25.425	25.843	-0.23603					13	9	2	0	0	0	0.027866	1	1248	1248		12.207	0	1	84946	+		89392	22280	62184	62286	99465	99465					0.11593182879175856
WGLAQWQV	8	Unmodified	_WGLAQWQV_					0	0	0		ENST00000330793.1_1_17:72541920-72542076:-|nuORF	ENST00000330793.1_1_17:72541920-72542076:-|nuORF	ENST00000330793.1_1_17:72541920-72542076:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.28717041015625	2	494.255977	986.497401	-0.96024	-0.0004746	-4.0106	-0.0019823	-4.9708	-0.0024569	494.25380172065593	30.115	0.53087	30.115	29.895	30.426	0					17	12	2	0	0	0	0.027866	1	1878	1878		29.842	9.3597	1	141420			89393	12331	62185	62287	99466	99466					0.0036122196290762076
WGLGQRPTL	9	Unmodified	_WGLGQRPTL_					0	0	0			REV__ENST00000444636.5_1_2:231191953-231193504:+|nuORF	REV__ENST00000444636.5_1_2:231191953-231193504:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.8037109375	2	514.287808	1026.56106	-0.75666	-0.00038914	1.0499	0.00053997	0.29329	0.00015083	514.2881544820368	58.162	0.79917	57.987	57.788	58.587	-0.1749					30	21	2	0	0	0	0.02435	1	6583	6583		51.335	20.832	1	614030	+		89394	32599	62186	62288	99467	99467					0.04884582399995452
WGLLPLAAW	9	Unmodified	_WGLLPLAAW_					0	0	0			REV__ENST00000497161.1_1_10:86008738-86014907:+|nuORF	REV__ENST00000497161.1_1_10:86008738-86014907:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.779296875	2	513.792195	1025.56984	-0.30621	-0.00015733	3.8054	0.0019552	3.4992	0.0017979	513.7935916130587	75.597	0.99717	75.338	74.863	75.86	-0.25865					59	24	4	0	0	0	0.023868	1	8965	8965		60.404	21.382	1	921980	+		89395	24626	62187	62289	99468	99468					0.05807556036438655
WGLLTAFF	8	Unmodified	_WGLLTAFF_					0	0	0			REV__ENST00000550566.6_1_12:112846864-112847275:-|nuORF	REV__ENST00000550566.6_1_12:112846864-112847275:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.26666259765625	2	477.757821	953.501089	-1.087	-0.0005193	-3.126	-0.0014935	-4.213	-0.0020128	477.7565002141279	49.022	0.5512	49.096	48.877	49.428	0.074196					18	14	2	0	0	0	0.027866	1	4976	4976		65.897	35.394	1	165560	+		89396	34911	62188	62290	99469	99469					0.02247891736760721
WGLNIFCVS	9	Unmodified	_WGLNIFCVS_					0	0	0		nc|ENSG00000065989|P27815-5|PDE4A;ENST00000590407.1_1_19:10569976-10577573:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A;ENST00000586275.1_1_19:10563984-10570204:+|nuORF	nc|ENSG00000065989|P27815-5|PDE4A	nc|ENSG00000065989|P27815-5|PDE4A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.3117065429688	2	519.757495	1037.50044	-0.80656	-0.00041922	-2.1633	-0.0011244	-2.9698	-0.0015436	519.7561956715032	53.209	0.39903	53.062	52.91	53.31	-0.14723					17	10	2	0	0	0	0.024405	1	5731	5731		35.618	8.9254	1	316390			89397	1326	62189	62291	99470	99470					-0.01681270974609106
WGLPALPAR	9	Unmodified	_WGLPALPAR_					0	0	0		ENST00000327064.8_1_19:11032637-11032877:+|nuORF	ENST00000327064.8_1_19:11032637-11032877:+|nuORF	ENST00000327064.8_1_19:11032637-11032877:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.74285888671875	2	490.787444	979.560336	-0.14391	-7.0631E-05	-4.1328	-0.0020283	-4.2767	-0.0020989	490.78545787606333	31.376	0.76871	31.224	30.846	31.615	-0.15231					28	19	2	0	0	0	0.024386	1	2121	2121		33.516	0	1	100210			89398	12288	62190	62292	99471	99471					0.06973787750928295
WGLPVLLAL	9	Unmodified	_WGLPVLLAL_					0	0	0			REV__ENST00000284617.6_1_1:229460006-229460093:-|nuORF	REV__ENST00000284617.6_1_1:229460006-229460093:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.29266357421875	2	491.310221	980.605889	-0.29923	-0.00014701	-3.7481	-0.0018415	-4.0473	-0.0019885	491.30832907451867	70.447	0.37393	70.46	70.308	70.682	0.012421					15	8	2	0	0	0	0.024541	1	8458	8458		21.702	0	1	402660	+		89399	29910	62191	62293	99472	99472					0.11481013213312963
WGLQEQLQ	8	Unmodified	_WGLQEQLQ_					0	0	0		ENSG00000101004|ENST00000278886|NINL;nc|ENSG00000101004|Q9Y2I6-2|NINL	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.7926940917969	2	501.256174	1000.49779	-2.0593	-0.0010323	2.1261	0.0010657	0.066724	3.3446E-05	501.25691497459263	52.178	0.88089	51.909	51.281	52.162	-0.26903					36	23	3	0	0	0	0.027866	1	5381	5381		60.972	0	1	815120			89400	2275	62192	62294	99473	99473					-0.0024340310790194053
WGLRYVAAAL	10	Unmodified	_WGLRYVAAAL_					0	0	0		ENST00000324138.7_2_X:14883662-14891178:-|nuORF;ENST00000398334.5_2_X:14887065-14891178:-|nuORF	ENST00000324138.7_2_X:14883662-14891178:-|nuORF	ENST00000324138.7_2_X:14883662-14891178:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	561.279541015625	2	560.319109	1118.62366	0.061716	3.458E-05	-1.4794	-0.00082893	-1.4177	-0.00079435	560.3183229645615	86.049	0.52215	85.912	85.702	86.224	-0.13734					15	11	2	0	0	0	0.03519	1	10465	10465		38.806	0	1	58444			89401	12250	62193	62295	99474	99474					0.06909728468167486
WGLVALLLL	9	Unmodified	_WGLVALLLL_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	500.3131408691406	2	499.325871	996.637189	0.3114	0.00015549	-3.8879	-0.0019413	-3.5765	-0.0017858	499.32362788419056	76.872	0.34205	76.62	76.399	76.741	-0.25162					12	7	2	0	0	0	0.024541	1	9139	9139		21.702	4.3374	1	52802	+		89402	24004	62194	62296	99475	99475					0.1387358624741637
WGMTPTRAL	9	Unmodified	_WGMTPTRAL_					0	0	0			REV__ENST00000486121.5_1_X:100662727-100662787:-|nuORF	REV__ENST00000486121.5_1_X:100662727-100662787:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.3004150390625	2	516.768394	1031.52224	-0.52676	-0.00027221	1.9685	0.0010173	1.4417	0.00074504	516.7688163914062	93.657	0.33609	93.652	93.41	93.746	-0.0042038					10	7	2	0	0	0	0.024292	1	11835	11835		68.787	24.67	1	37967	+		89403	21308	62195	62297	99476	99476					0.007735337739632087
WGNGMLPPE	9	Unmodified	_WGNGMLPPE_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.7869873046875	2	500.731477	999.448402	-0.080385	-4.0251E-05	-1.8484	-0.00092556	-1.9288	-0.00096581	500.7303511991643	60.283	0.1112	60.283	60.219	60.33	0					4	2	2	0	0	0	0.02435	1	6931	6931		51.335	22.186	1	45673	+		89404	27810	62196	62298	99477	99477					-0.051344343883556576
WGPGDPALL	9	Unmodified	_WGPGDPALL_					0	0	0		ENST00000424545.2_1_20:62337059-62338084:-|nuORF	ENST00000424545.2_1_20:62337059-62338084:-|nuORF	ENST00000424545.2_1_20:62337059-62338084:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	463.277099609375	2	463.242535	924.470518	0.46049	0.00021332	2.3377	0.0010829	2.7982	0.0012963	463.243494396048	46.454	1.1544	46.505	45.794	46.949	0.051395					40	32	2	0	0	0	0.024354	1	4603	4603		38.806	15.764	1	110960			89405	14048	62197	62299	99478	99478					0.005261133517251437
WGPLPSIKV	9	Unmodified	_WGPLPSIKV_					0	0	0			REV__ENST00000311637.9_2_20:50216404-50216899:-|nuORF	REV__ENST00000311637.9_2_20:50216404-50216899:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.2752685546875	2	498.797478	995.580402	-0.60427	-0.00030141	0.67154	0.00033496	0.067272	3.3555E-05	498.79773751583133	45.658	0.7757	45.507	45.178	45.954	-0.15157					36	22	2	0	0	0	0.024436	1	4462	4462		16.473	0	1	2564700	+		89406	30211	62198	62300	99479	99479					0.08243538690908281
WGPPGHAH	8	Unmodified	_WGPPGHAH_					0	0	0		ENST00000595970.1_1_19:43968411-43969723:-|nuORF	ENST00000595970.1_1_19:43968411-43969723:-|nuORF	ENST00000595970.1_1_19:43968411-43969723:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	429.73779296875	2	429.703912	857.39327	0.21086	9.0606E-05	-2.6901	-0.0011559	-2.4792	-0.0010653	429.702862956815	39.79	0.11124	39.79	39.696	39.808	0					4	2	2	0	0	0	0.027866	1	3451	3451		24.504	6.1796	1	103890			89407	17428	62199	62301	99480	99480					-0.041130600739620604
WGPRERRAL	9	Unmodified	_WGPRERRAL_					0	0	0		ENSG00000103260|ENST00000568223|METRN	ENSG00000103260|ENST00000568223|METRN	ENSG00000103260|ENST00000568223|METRN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.8222045898438	2	570.822881	1139.63121	-0.40014	-0.00022841	-1.6485	-0.00094099	-2.0486	-0.0011694	570.8219979013844	52.005	1.8327	51.858	51.3	53.132	-0.14735					152	49	6	0	0	0	0.33245	1	5559	5559		71.296	1.6681	1	14745000			89408	2488	62200	62302	99481	99481					0.06697880788487964
WGPSDKTSF	9	Unmodified	_WGPSDKTSF_					0	0	0			REV__ENST00000392557.8_1_14:105713688-105714024:-|nuORF	REV__ENST00000392557.8_1_14:105713688-105714024:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	513.3023681640625	2	512.740357	1023.46616	0.12037	6.1718E-05	-0.33328	-0.00017089	-0.21292	-0.00010917	512.7400429931574	52.104	1.0205	51.92	51.374	52.395	-0.18404					50	26	3	0	0	0	0.02435	1	5299	5299		26.693	0	1	529720	+		89409	31614	62201	62303	99482	99482					-0.044633958618419456
WGPSDKTSF	9	Unmodified	_WGPSDKTSF_					0	0	0			REV__ENST00000392557.8_1_14:105713688-105714024:-|nuORF	REV__ENST00000392557.8_1_14:105713688-105714024:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	512.740357	1023.46616	-0.34658	-0.00017771	0.36253	0.00018588	0.015945	8.1755E-06	512.7404161518201	51.933	0.81768	51.814	51.504	52.322	-0.11875	-0.083946	-0.00039517	NaN	34.173	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	602630	+		89410	31614	62201	62303							-0.044633958618419456
WGPSDKTSF	9	Unmodified	_WGPSDKTSF_					0	0	0			REV__ENST00000392557.8_1_14:105713688-105714024:-|nuORF	REV__ENST00000392557.8_1_14:105713688-105714024:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	512.740357	1023.46616	-1.8453	-0.00094618	1.7106	0.00087708	-0.13476	-6.9096E-05	512.7410482030692	52.229	0.85699	51.96	51.656	52.513	-0.26903	0.062055	0.00098722	NaN	34.173	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611890	+		89411	31614	62201	62303							-0.044633958618419456
WGPSLLLAL	9	Unmodified	_WGPSLLLAL_					0	0	0		ENST00000532085.1_1_11:118895622-118896243:-|nuORF	ENST00000532085.1_1_11:118895622-118896243:-|nuORF	ENST00000532085.1_1_11:118895622-118896243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	484.7982177734375	2	485.292028	968.569503	0.34683	0.00016831	-2.9813	-0.0014468	-2.6345	-0.0012785	485.29027566645203	59.631	0.65682	59.431	59.318	59.975	-0.20016					19	17	2	0	0	0	0.024466	1	6769	6769		25.45	0	1	189140			89412	16278	62202	62304	99483	99483					0.08396136316616776
WGPWCPSI	8	Unmodified	_WGPWCPSI_					0	0	0			REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	472.7539367675781	2	473.218006	944.421459	-0.42026	-0.00019887	0.72671	0.00034389	0.30646	0.00014502	473.21854656661776	39.433	0.3869	39.334	39.127	39.514	-0.098751					13	10	2	0	0	0	0.027866	1	3383	3383		20.482	0	1	99081	+		89413	31972	62203	62305	99484	99484					-0.05297498208892648
WGQPVQLT	8	Unmodified	_WGQPVQLT_					0	0	0			REV__ENSG00000223611|ENST00000486479|SUPT20HL2	REV__ENSG00000223611|ENST00000486479|SUPT20HL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.2789611816406	2	464.747985	927.481417	-1.2232	-0.00056849	2.0463	0.00095099	0.82303	0.0003825	464.74852961441627	51.713	0.33899	51.444	51.281	51.62	-0.26903					12	8	2	0	0	0	0.027866	1	5296	5296		19.36	0	1	109740	+		89414	28853	62204	62306	99485	99485					0.01477515725991907
WGQWRQVK	8	Unmodified	_WGQWRQVK_					0	0	0			REV__ENST00000418300.1_1_1:990436-991403:+|nuORF	REV__ENST00000418300.1_1_1:990436-991403:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2896118164062	2	544.293425	1086.5723	-0.77504	-0.00042185	1.3372	0.00072781	0.56213	0.00030596	544.2938017194822	50.735	0.47524	50.586	50.495	50.97	-0.14915					23	13	2	0	0	0	0.027866	1	5357	5357		31.955	0	1	302940	+		89415	32114	62205	62307	99486	99486					0.032474044941182
WGRAILYN	8	Unmodified	_WGRAILYN_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	497.30718994140625	2	496.769252	991.52395	-0.48677	-0.00024181	-0.37544	-0.00018651	-0.86221	-0.00042832	496.7705620554167	83.041	0.29974	83.067	82.831	83.13	0.026558					9	6	2	0	0	0	0.027866	1	10292	10292		33.516	8.0654	1	50978	+		89416	20541	62206	62308	99487	99487					0.027849108542341128
WGRAILYN	8	Unmodified	_WGRAILYN_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	496.769252	991.52395	0.038494	1.9122E-05	1.0231	0.00050826	1.0616	0.00052738	496.7696896071653	82.728	0.25747	82.728	82.664	82.922	0	-0.18993	0.00017366	NaN	42.474	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38425	+		89417	20541	62206	62308							0.027849108542341128
WGRGPGGL	8	Unmodified	_WGRGPGGL_					0	0	0		ENST00000466349.1_1_6:155632464-155635520:-|nuORF	ENST00000466349.1_1_6:155632464-155635520:-|nuORF	ENST00000466349.1_1_6:155632464-155635520:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.8875427246094	2	400.214112	798.413671	1.9596	0.00078425	-1.9939	-0.00079798	-0.034308	-1.373E-05	400.21340468502643	30.282	0.12384	30.356	30.254	30.378	0.074314					4	2	2	0	0	0	0.027866	1	1872	1872		8.8223	0	1	8000			89418	14809	62207	62309	99488	99488					0.006401105858685696
WGRILPVSA	9	Unmodified	_WGRILPVSA_					0	0	0		ENST00000438378.2_1_2:132278647-132279013:+|nuORF	ENST00000438378.2_1_2:132278647-132279013:+|nuORF	ENST00000438378.2_1_2:132278647-132279013:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.80389404296875	2	499.792727	997.5709	-0.03929	-1.9637E-05	-0.073944	-3.6957E-05	-0.11323	-5.6594E-05	499.7924731732998	53.539	0.51151	53.281	53	53.512	-0.25838					25	13	2	0	0	0	0.024436	1	5585	5585		23.042	0	1	679890			89419	14308	62208	62310	99489	99489					0.07201770405367824
WGRLAPRE	8	Unmodified	_WGRLAPRE_					0	0	0		ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	493.2998962402344	2	492.772326	983.530098	0.11472	5.6532E-05	3.0783	0.0015169	3.193	0.0015734	492.7735228414661	90.302	0.45448	90.315	90.082	90.536	0.013435					18	10	2	0	0	0	0.027866	1	11324	11324		29.15	7.1897	1	179160			89420	11725	62209	62311	99490	99490					0.037674290857466985
WGRRITDV	8	Unmodified	_WGRRITDV_					0	0	0		ENSG00000168928|ENST00000303037|CTRB2;ENSG00000168925|ENST00000361017|CTRB1	ENSG00000168928|ENST00000303037|CTRB2	ENSG00000168928|ENST00000303037|CTRB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.2896728515625	2	501.777608	1001.54066	-0.74576	-0.00037421	-0.97428	-0.00048887	-1.72	-0.00086308	501.77699137681117	55.785	1.2865	55.883	55.148	56.435	0.097988					60	34	3	0	0	0	0.027866	1	6060	6060		60.294	14.322	1	1231200			89421	7884	62210	62312	99491	99491					0.03995411740186228
WGRTYRAKSSV	11	Unmodified	_WGRTYRAKSSV_					0	0	0			REV__ENST00000328663.8_1_5:68662352-68665530:-|nuORF	REV__ENST00000328663.8_1_5:68662352-68665530:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.7534484863281	3	437.570316	1309.68912	0.20275	8.8718E-05	2.7121	0.0011867	2.9149	0.0012755	437.57143184367567	48.943	1.1207	48.761	48.373	49.494	-0.18206					75	29	4	0	0	0	0.024792	1	4995	4995		13.508	4.7086	1	2061300	+		89422	30433	62211	62313	99492	99492					0.04666097923222878
WGSAPHLP	8	Unmodified	_WGSAPHLP_					0	0	0		ENST00000595792.1_1_19:50369586-50370764:-|nuORF	ENST00000595792.1_1_19:50369586-50370764:-|nuORF	ENST00000595792.1_1_19:50369586-50370764:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	432.7204284667969	2	432.72177	863.428987	-0.18437	-7.9782E-05	-2.5182	-0.0010897	-2.7025	-0.0011695	432.7204933344157	30.863	0.96854	30.622	30.326	31.295	-0.24109					52	23	3	0	0	0	1.0472	1	1992	1992		29.842	0	1	1264200			89423	17424	62212	62314	99493	99493					-0.008190226169631387
WGSILVLLL	9	Unmodified	_WGSILVLLL_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.78411865234375	2	507.323328	1012.6321	-0.4618	-0.00023428	-4.0037	-0.0020312	-4.4655	-0.0022655	507.8217850296872	72.866	0.29588	72.866	72.698	72.994	0					10	6	2	0	0	0	0.024381	1	8884	8884		55.504	4.1688	1	43138	+		89424	36906	62213	62315	99494	99494					0.12629282384818907
WGSILVLLL	9	Unmodified	_WGSILVLLL_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.7931823730469	2	507.323328	1012.6321	0.068435	3.4719E-05	-4.1675	-0.0021143	-4.099	-0.0020795	507.3210963395623	68.152	0.69847	67.864	67.632	68.331	-0.28835					34	17	3	0	0	0	0.024436	1	8187	8187		47.916	33.051	1	992990	+		89425	36906	62213	62315	99495	99495					0.12629282384818907
WGSILVLLL	9	Unmodified	_WGSILVLLL_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-7|GLYCTK	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	507.323328	1012.6321	0.27709	0.00014057	-4.2258	-0.0021439	-3.9487	-0.0020033	507.32104510055046	67.9	0.68452	67.919	67.669	68.353	0.018913	0.06585	2.5591E-05	NaN	55.504	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	840400	+		89426	36906	62213	62315							0.12629282384818907
WGSIQDGVP	9	Unmodified	_WGSIQDGVP_					0	0	0		ENSG00000005001|ENST00000161006|PRSS22;ENST00000575164.1_1_16:2903096-2905944:-|nuORF	ENSG00000005001|ENST00000161006|PRSS22	ENSG00000005001|ENST00000161006|PRSS22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	479.7355041503906	2	479.735074	957.455596	1.0655	0.00051115	-0.68576	-0.00032898	0.37972	0.00018216	479.7344760086726	60.053	1.9295	59.856	59.38	61.309	-0.19742					134	48	5	0	0	0	0.55828	1	6707	6707		55.504	5.4797	1	22815000			89427	755	62214	62316	99496	99496					-0.024833785162854838
WGSIQDGVP	9	Unmodified	_WGSIQDGVP_					0	0	0		ENSG00000005001|ENST00000161006|PRSS22;ENST00000575164.1_1_16:2903096-2905944:-|nuORF	ENSG00000005001|ENST00000161006|PRSS22	ENSG00000005001|ENST00000161006|PRSS22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.73516845703125	2	479.735074	957.455596	-0.060134	-2.8848E-05	0.3875	0.0001859	0.32737	0.00015705	479.735037745241	60.121	2.0983	59.873	59.294	61.392	-0.24841					157	52	6	0	0	0	0.70186	1	6716	6716		45.952	6.9305	1	23269000			89428	755	62214	62316	99497	99497					-0.024833785162854838
WGSLPSLII	9	Unmodified	_WGSLPSLII_					0	0	0			REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	493.3067626953125	2	493.289485	984.564418	0.064409	3.1772E-05	-2.2448	-0.0011074	-2.1804	-0.0010756	493.28778703265914	56.064	0.67504	56.064	55.822	56.497	0					26	18	2	0	0	0	0.018819	1	6224	6224		97.473	23.218	1	1034100	+		89429	36678	62215	62317	99498	99498					0.07151832454019313
WGTHSRAR	8	Unmodified	_WGTHSRAR_					0	0	0			REV__ENST00000227507.2_1_11:69468284-69468383:+|nuORF	REV__ENST00000227507.2_1_11:69468284-69468383:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	484.76708984375	2	485.751924	969.489296	-0.49619	-0.00024103	-2.2932	-0.0011139	-2.7894	-0.001355	485.75106173260195	27.204	0.21102	27.035	26.931	27.142	-0.16816					5	4	2	0	0	0	0.027866	1	1476	1476		16.473	8.7829	1	27526	+		89430	29383	62216	62318	99499	99499					0.0033308776612557267
WGTIEVEN	8	Unmodified	_WGTIEVEN_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;ENST00000586456.1_1_17:75486911-75493449:+|nuORF	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	473.26983642578125	2	474.227082	946.439611	0.094209	4.4677E-05	-4.0047	-0.0018992	-3.9105	-0.0018545	474.22497438876417	26.913	0.39711	26.9	26.704	27.101	-0.012981					15	9	2	0	0	0	0.027866	1	1385	1385		38.806	12.113	1	165550			89431	9359	62217	62319	99500	99500					-0.0357508475318582
WGTPVPLE	8	Unmodified	_WGTPVPLE_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.2705078125	2	449.737086	897.459619	0.594	0.00026714	-4.1945	-0.0018864	-3.6005	-0.0016193	449.734948034342	21.658	0.77014	21.48	20.918	21.688	-0.17721					27	15	3	0	0	0	0.027866	1	644	644		35.201	14.719	1	53613			89432	7639;14472	62218	62320	99501	99501					0.0067871097741090125
WGTPVPLE	8	Unmodified	_WGTPVPLE_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	449.737086	897.459619	-0.56998	-0.00025634	-0.71232	-0.00032036	-1.2823	-0.0005767	449.7367075281597	21.284	0.44035	21.284	21.097	21.537	0	-0.063838	0.0017224	NaN	26.796	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15533			89433	7639;14472	62218	62320							0.0067871097741090125
WGTPVPLE	8	Unmodified	_WGTPVPLE_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	449.737086	897.459619	-0.20004	-8.9965E-05	-0.63317	-0.00028476	-0.83321	-0.00037472	449.7367526477492	21.37	0.48548	21.28	21.059	21.545	-0.090092	-0.068323	0.0017936	NaN	26.796	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14314			89434	7639;14472	62218	62320							0.0067871097741090125
WGVAVGVVF	9	Unmodified	_WGVAVGVVF_					0	0	0			REV__ENST00000425389.2_1_7:150070026-150070173:+|nuORF	REV__ENST00000425389.2_1_7:150070026-150070173:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	467.3004150390625	2	467.263271	932.511988	-0.15958	-7.4565E-05	-0.055739	-2.6045E-05	-0.21532	-0.00010061	467.26243264734114	92.378	1.2552	92.255	91.414	92.669	-0.12241					40	29	2	0	0	0	0.024389	1	11359	11359		29.842	0	1	53944	+		89435	32250	62219	62321	99502	99502					0.04303294111048217
WGVPFPII	8	Unmodified	_WGVPFPII_					0	0	0		nc|ENSG00000263715|P34998-3|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1;nc|ENSG00000263715|P34998-5|CRHR1	nc|ENSG00000263715|P34998-3|CRHR1	nc|ENSG00000263715|P34998-3|CRHR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.2870178222656	2	464.768189	927.521825	0.16747	7.7834E-05	-4.3294	-0.0020122	-4.162	-0.0019344	464.7660302658688	76.589	0.75946	76.321	76.088	76.848	-0.26806					27	17	2	0	0	0	0.027866	1	9059	9059		33.493	7.9189	1	119540			89436	3793	62220	62322	99503	99503					0.05516482116433963
WGVPHLGLS	9	Unmodified	_WGVPHLGLS_					0	0	0		ENST00000520584.5_1_8:144329141-144329249:+|nuORF	ENST00000520584.5_1_8:144329141-144329249:+|nuORF	ENST00000520584.5_1_8:144329141-144329249:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.2850341796875	2	483.263802	964.513051	-0.19023	-9.1932E-05	1.7283	0.00083521	1.538	0.00074328	483.2643609268219	55.046	0.55626	54.896	54.676	55.232	-0.15036					25	15	3	0	0	0	0.024497	1	6004	6004		20.482	12.792	1	107390			89437	15984	62221	62323	99504	99504					0.029375084799426077
WGVPLLPLP	9	Unmodified	_WGVPLLPLP_					0	0	0		ENST00000308436.11_1_11:62356680-62359021:-|nuORF	ENST00000308436.11_1_11:62356680-62359021:-|nuORF	ENST00000308436.11_1_11:62356680-62359021:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.28961181640625	2	496.302396	990.590239	-0.14772	-7.3315E-05	0.81033	0.00040217	0.66261	0.00032886	496.30236567529926	50.853	0.50793	50.704	50.425	50.933	-0.14916					23	14	3	0	0	0	0.024389	1	5360	5360		21.702	1.2205	1	149690			89438	12030	62222	62324	99505	99505					0.09456726696282658
WGVTCECHAD	10	Unmodified	_WGVTCECHAD_					0	0	0			REV__ENSG00000141429|ENST00000269195|GALNT1	REV__ENSG00000141429|ENST00000269195|GALNT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	560.3115844726562	2	560.712959	1119.41136	-0.15021	-8.4223E-05	0.29821	0.00016721	0.148	8.2987E-05	560.7131777863173	52.118	0.52423	51.934	51.669	52.193	-0.18404					21	13	2	0	0	0	0.03519	1	5357	5357		15.642	1.5047	1	233450	+		89439	24083	62223	62325	99506	99506					-0.143564739964404
WGVTPLLLL	9	Unmodified	_WGVTPLLLL_					0	0	0			REV__ENST00000496342.1_1_22:29656732-29660364:-|nuORF	REV__ENST00000496342.1_1_22:29656732-29660364:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	506.8233337402344	2	506.315503	1010.61645	-0.23287	-0.00011791	1.9729	0.00099889	1.74	0.00088099	506.3167065842894	60.907	0.67634	60.701	60.213	60.889	-0.20599					18	16	2	0	0	0	0.024183	1	6722	6722		31.955	0	1	142450	+		89440	21076	62224	62326	99507	99507					0.11156995867781916
WGVVMEPRG	9	Unmodified	_WGVVMEPRG_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2898559570312	2	515.760569	1029.50659	-0.77751	-0.00040101	1.5426	0.00079561	0.76509	0.00039461	515.7619368416143	33.895	0.16054	33.951	33.81	33.971	0.056572					5	3	2	0	0	0	0.024436	1	2434	2434		30.504	0	1	38148	+		89441	22179	62225	62327	99508	99508					-0.006987527430737828
WGWILLIY	8	Unmodified	_WGWILLIY_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|44	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|0|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|44	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.8211059570312	2	532.302396	1062.59024	-0.39925	-0.00021252	-1.2805	-0.00068159	-1.6797	-0.00089411	532.3019222104618	69.838	0.41458	69.587	69.276	69.691	-0.25063					13	9	2	0	0	0	0.027866	1	8134	8134		33.493	0	1	232350	+		89442	19331	62226	62328	99509	99509					0.06144726696311409
WGWPPHPL	8	Unmodified	_WGWPPHPL_					0	0	0		ENST00000483318.5_1_6:30880034-30880937:+|nuORF;ENST00000477288.5_1_6:30880034-30881757:+|nuORF	ENST00000483318.5_1_6:30880034-30880937:+|nuORF	ENST00000483318.5_1_6:30880034-30880937:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	494.8056335449219	2	495.253237	988.491922	-0.52769	-0.00026134	3.9833	0.0019727	3.4556	0.0017114	495.25565870516556	39.227	0.70741	39.004	38.755	39.462	-0.22311					22	18	2	0	0	0	0.027866	1	3361	3361		24.504	0	1	101740			89443	15110	62227	62329	99510	99510					-0.002784568289143863
WHEKSITM	8	Unmodified	_WHEKSITM_					0	0	0		ENST00000518233.5_1_8:86244700-86255007:-|nuORF	ENST00000518233.5_1_8:86244700-86255007:-|nuORF	ENST00000518233.5_1_8:86244700-86255007:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	516.2703857421875	2	516.252577	1030.4906	-1.3322	-0.00068776	0.46695	0.00024106	-0.86528	-0.0004467	516.2524303128323	50.884	0.26044	50.971	50.855	51.116	0.087006					9	6	2	0	0	0	0.027866	1	5302	5302		71.378	11.084	1	38316			89444	15925	62228	62330	99511	99511					-0.023424589800015383
WHKKTPLTS	9	Unmodified	_WHKKTPLTS_					0	0	0			REV__nc|ENSG00000005884|P26006-1|ITGA3	REV__nc|ENSG00000005884|P26006-1|ITGA3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3120727539062	2	549.308741	1096.60293	2.0921	0.0011492	4.4297	0.0024333	6.5219	0.0035825	549.3110616545137	19.441	0.49349	19.507	19.242	19.735	0.066195					31	9	5	0	0	0	0.89441	1	391	391		32.812	7.2384	1	392860	+		89445	36428	62229	62331	99512	99512					0.058491380885243416
WHKRPVNLPN	10	Unmodified	_WHKRPVNLPN_					0	0	0			REV__ENST00000487010.1_1_2:189873796-189875118:+|nuORF	REV__ENST00000487010.1_1_2:189873796-189875118:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	420.9020690917969	3	420.903518	1259.68872	1.1662	0.00049088	-3.9018	-0.0016423	-2.7355	-0.0011514	420.9017745065967	109.96	0.6833	109.96	109.75	110.43	0					58	22	4	0	0	0	1.0997	2	13975	13975;13991		32.751	0.71641	1	985360	+		89446	26274	62230	62332	99513;99514	99513					0.06926722994035117
WHKRPVNLPN	10	Unmodified	_WHKRPVNLPN_					0	0	0			REV__ENST00000487010.1_1_2:189873796-189875118:+|nuORF	REV__ENST00000487010.1_1_2:189873796-189875118:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	420.9020080566406	3	420.903518	1259.68872	0.031902	1.3428E-05	-2.7899	-0.0011743	-2.758	-0.0011609	420.90228565022244	110.14	0.70747	110.02	109.81	110.51	-0.12525					69	26	4	0	0	0	1.1314	1	13542	13542		27.047	0.29761	1	461840	+		89447	26274	62230	62332	99515	99515					0.06926722994035117
WHLVILKV	8	Unmodified	_WHLVILKV_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	REV__nc|ENSG00000145103|Q86SU0-3|ILDR1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	504.3271789550781	2	504.323663	1006.63277	4.7418	0.0023914	1.9331	0.00097491	6.6749	0.0033663	504.3246561985497	17.917	1.1535	17.977	17.786	18.939	0.06036					67	24	5	0	0	0	1.0472	1	213	213		29.842	8.1392	1	2544500	+		89448	24383	62231	62333	99516	99516					0.12972121824498117
WHPDSPLERSA	11	Unmodified	_WHPDSPLERSA_					0	0	0			REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense	REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	647.8117065429688	2	647.812376	1293.6102	-2.445	-0.0015839	0.48148	0.00031191	-1.9635	-0.001272	647.8127220537594	62.792	1.6359	62.571	62.237	63.873	-0.22097					94	43	4	0	0	0	0.849	1	7076	7076		54.722	1.6334	1	14041000	+		89449	36298	62232	62334	99517	99517					-0.024861741017275563
WHPDSPLERSA	11	Unmodified	_WHPDSPLERSA_					0	0	0			REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense	REV__L1PBa_dup1828|chr14:24643172-24644816:+|1.1878154075540976|0.0733275215643681|4.02|506.0|10|1|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	647.8114624023438	2	647.812376	1293.6102	-0.23617	-0.00015299	-2.1475	-0.0013911	-2.3836	-0.0015441	647.810981527909	62.734	1.7846	62.55	62.185	63.97	-0.18386					103	50	3	0	0	0	0.849	1	7072	7072		54.722	1.6334	1	10315000	+		89450	36298	62232	62334	99518	99518					-0.024861741017275563
WHPLPCLK	8	Unmodified	_WHPLPCLK_					0	0	0			REV__ENST00000472524.1_1_11:64122872-64124957:+|nuORF	REV__ENST00000472524.1_1_11:64122872-64124957:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2722473144531	2	497.270573	992.526593	0.051009	2.5365E-05	3.1827	0.0015827	3.2337	0.001608	497.27223352743744	89.513	2.0339	89.513	88.936	90.97	0					105	48	5	0	0	0	0.94001	1	11308	11308		46.766	4.3703	1	1314200	+		89451	33208	62233	62335	99519	99519					0.030030429875182563
WHPSSGSIW	9	Unmodified	_WHPSSGSIW_					0	0	0			REV__ENST00000370251.3_2_X:152617491-152617668:+|nuORF	REV__ENST00000370251.3_2_X:152617491-152617668:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	528.7484130859375	2	528.748516	1055.48248	0.22244	0.00011761	-0.58883	-0.00031134	-0.36639	-0.00019373	528.7479914888474	85.049	3.2624	84.846	83.951	87.213	-0.20329					161	76	5	0	0	0	0.67308	1	10274	10274		47.916	0.25827	1	1961800	+		89452	31119	62234	62336	99520	99520					-0.04304269905082947
WHPSSGSIW	9	Unmodified	_WHPSSGSIW_					0	0	0			REV__ENST00000370251.3_2_X:152617491-152617668:+|nuORF	REV__ENST00000370251.3_2_X:152617491-152617668:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.7483520507812	2	528.748516	1055.48248	0.51812	0.00027396	-0.86828	-0.0004591	-0.35016	-0.00018515	528.7478249114087	84.976	3.36	84.838	83.845	87.205	-0.13752					151	78	4	0	0	0	0.64155	1	10240	10240		50.025	5.6474	1	1831100	+		89453	31119	62234	62336	99521	99521					-0.04304269905082947
WHRERLQV	8	Unmodified	_WHRERLQV_					0	0	0			REV__ENSG00000004142|ENST00000540200|POLDIP2	REV__ENSG00000004142|ENST00000540200|POLDIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	562.3106079101562	2	562.309606	1122.60466	-0.17122	-9.6276E-05	2.4821	0.0013957	2.3109	0.0012994	562.3109584507064	95.007	0.90732	95.011	94.651	95.558	0.0033798					28	20	2	0	0	0	0.42327	1	12060	12060		94.006	8.8456	1	420200	+		89454	19776	62235	62337	99522	99522					0.04826191897132048
WHRERLQV	8	Unmodified	_WHRERLQV_					0	0	0			REV__ENSG00000004142|ENST00000540200|POLDIP2	REV__ENSG00000004142|ENST00000540200|POLDIP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	562.3099975585938	2	562.309606	1122.60466	-0.20533	-0.00011546	2.4521	0.0013788	2.2468	0.0012634	562.3109414916147	95.126	0.69163	95.13	94.791	95.483	0.0041199					25	15	2	0	0	0	0.47665	1	12026	12026		87.754	18.127	1	446740	+		89455	19776	62235	62337	99523	99523					0.04826191897132048
WHRRLQHVG	9	Unmodified	_WHRRLQHVG_					0	0	0			REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	594.8303833007812	2	594.828498	1187.64244	-0.74958	-0.00044587	3.0114	0.0017913	2.2619	0.0013454	594.8302044744365	73.308	0.68675	73.031	72.756	73.443	-0.2769					45	16	4	0	0	0	0.40179	2	8597	8597;8608		65.803	7.5733	1	1569300	+		89456	35267	62236	62338	99524;99525	99524					0.056127028825812886
WHRRLQHVG	9	Unmodified	_WHRRLQHVG_					0	0	0			REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.829833984375	2	594.828498	1187.64244	-1.066	-0.00063411	3.2545	0.0019359	2.1885	0.0013018	594.8303073042272	73.325	0.761	73.061	72.724	73.485	-0.26479					49	18	4	0	0	0	0.40179	1	8623	8623		65.803	1.5959	1	1950400	+		89457	35267	62236	62338	99526	99526					0.056127028825812886
WHRRLQHVG	9	Unmodified	_WHRRLQHVG_					0	0	0			REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	594.8296508789062	2	594.828498	1187.64244	-0.80901	-0.00048122	3.0403	0.0018085	2.2313	0.0013272	594.8301446083168	73.076	0.84917	72.881	72.543	73.392	-0.19424					54	20	4	0	0	0	0.40179	2	8574	8574;8587		65.803	12.64	1	1965600	+		89458	35267	62236	62338	99527;99528	99527					0.056127028825812886
WHVNTNDSY	9	Unmodified	_WHVNTNDSY_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;ENST00000555285.1_1_15:21900283-21902979:-|nuORF	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.245361328125	2	568.243795	1134.47304	0.30474	0.00017317	2.7454	0.0015601	3.0502	0.0017332	568.2451426761388	17.133	0.21739	16.99	16.867	17.084	-0.14278					14	5	3	0	0	0	0.96322	1	126	126		27.882	1.0861	1	44323			89459	8321	62237	62339	99529	99529					-0.08882082981290296
WIADRAIL	8	Unmodified	_WIADRAIL_					0	0	0			REV__ENST00000523654.5_1_5:71615848-71615929:-|nuORF	REV__ENST00000523654.5_1_5:71615848-71615929:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2777099609375	2	479.279452	956.544351	-0.56358	-0.00027011	-3.3047	-0.0015839	-3.8683	-0.001854	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	0.97924	2	10463	10330;10463		40.573	4.883	1	4947400	+		89460	34357	62238	62340	99530;99531	99531					0.0643408151404401
WIAEKLLK	8	Unmodified	_WIAEKLLK_					0	0	0			REV__ENSG00000124217|ENST00000244051|MOCS3	REV__ENSG00000124217|ENST00000244051|MOCS3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	500.7926025390625	2	500.813128	999.611703	0.063422	3.1763E-05	2.3296	0.0011667	2.393	0.0011985	500.8144872508703	51.857	0.14772	51.738	51.61	51.758	-0.11875					5	3	2	0	0	0	0.027866	1	5351	5351		51.335	0	1	93800	+		89461	22751	62239	62341	99532	99532					0.11188111724993632
WIAIPNRL	8	Unmodified	_WIAIPNRL_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.79559326171875	2	491.795269	981.575986	-0.55332	-0.00027212	1.5042	0.00073978	0.95092	0.00046766	491.7958689020097	48.547	2.1449	48.271	48.004	50.149	-0.27598					170	57	4	0	0	0	1.0574	1	4806	4806		26.796	0	1	3311200	+		89462	26525	62240	62342	99533	99533					0.08446074267999393
WIAIVRAPNKA	11	Unmodified	_WIAIVRAPNKA_					0	0	0			REV__ENST00000472180.1_1_1:224001926-224009041:-|nuORF	REV__ENST00000472180.1_1_1:224001926-224009041:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8690795898438	2	619.87204	1237.72953	-0.48862	-0.00030288	-3.8536	-0.0023888	-4.3423	-0.0026916	619.8694795106298	92.383	2.3242	92.392	91.112	93.437	0.009407					190	55	4	0	0	0	1.0399	1	11647	11647		27.882	0	1	1566400	+		89463	33200	62241	62343	99534	99534					0.1201706431365892
WIDPRLHTP	9	Unmodified	_WIDPRLHTP_					0	0	0		nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.3302612304688	2	567.806365	1133.59818	0.23242	0.00013197	-1.309	-0.00074327	-1.0766	-0.00061129	567.8055836355069	93.466	0.69466	93.344	93.06	93.754	-0.12215					24	15	2	0	0	0	0.024436	1	11501	11501		47.916	0.25827	1	84444			89464	18756	62242	62344	99535	99535					0.03672253945751436
WIDPRLHTP	9	Unmodified	_WIDPRLHTP_					0	0	0		nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.806365	1133.59818	-0.48626	-0.0002761	-1.9274	-0.0010944	-2.4137	-0.0013705	567.8055861351369	93.526	0.70571	93.526	93.261	93.967	0	0.17028	-0.001728	NaN	47.916	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126720			89465	18756	62242	62344							0.03672253945751436
WIFKKKIV	8	Unmodified	_WIFKKKIV_					0	0	0			REV__ENST00000404924.5_1_2:24150417-24181201:+|nuORF	REV__ENST00000404924.5_1_2:24150417-24181201:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.289794921875	2	531.347138	1060.67972	-0.47384	-0.00025177	4.3661	0.0023199	3.8922	0.0020681	531.3495109821366	55.433	0.098618	55.217	55.136	55.234	-0.21551					4	2	2	0	0	0	0.027866	1	5931	5931		20.482	4.0087	1	93679	+		89466	31902	62243	62345	99536	99536					0.15180981375647207
WIFLLLLN	8	Unmodified	_WIFLLLLN_					0	0	0		ENST00000550703.6_1_12:111066661-111066727:+|nuORF;ENST00000551555.2_1_12:111066661-111070313:+|nuORF	ENST00000550703.6_1_12:111066661-111066727:+|nuORF	ENST00000550703.6_1_12:111066661-111066727:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	515.7611083984375	2	516.318046	1030.62154	-0.50866	-0.00026263	-0.90911	-0.00046939	-1.4178	-0.00073202	516.3172945405835	70.972	0.95914	70.982	70.55	71.509	0.010735					34	23	2	0	0	0	0.027866	1	8483	8483		44.531	17.735	1	208430			89467	16590	62244	62346	99537	99537					0.10745299730410807
WIFLVSPI	8	Unmodified	_WIFLVSPI_					0	0	0		ENST00000430886.5_1_22:38565377-38577774:-|nuORF	ENST00000430886.5_1_22:38565377-38577774:-|nuORF	ENST00000430886.5_1_22:38565377-38577774:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.7904052734375	2	487.789121	973.56369	0.56547	0.00027583	2.4795	0.0012095	3.0449	0.0014853	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	1.0572	1	10181	10181		28.254	2.8041	1	2408700			89468	14179	62245	62347	99538	99538					0.0758503780494948
WIGLQEERA	9	Unmodified	_WIGLQEERA_					0	0	0		ENSG00000153246|ENST00000283243|PLA2R1;nc|ENSG00000153246|Q13018-2|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.8102416992188	2	551.288005	1100.56146	-0.95474	-0.00052634	-0.72231	-0.0003982	-1.6771	-0.00092454	551.2869584887899	61.008	0.19024	60.754	60.623	60.813	-0.25373					6	4	2	0	0	0	0.024541	1	6789	6789		17.365	0	1	129550			89469	6335	62246	62348	99539	99539					0.015199573291965862
WIGLSPKV	8	Unmodified	_WIGLSPKV_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	449.753173828125	2	450.271096	898.527639	-0.70515	-0.00031751	-4.114	-0.0018524	-4.8192	-0.0021699	450.26926956111936	39.946	0.53386	39.969	39.741	40.275	0.023006					22	14	2	0	0	0	0.027866	1	3451	3451		53.351	0	1	154810	+		89470	20971	62247	62349	99540	99540					0.07431580628087886
WIHFTRRRRRR	11	Unmodified	_WIHFTRRRRRR_					0	0	0			REV__ENST00000317613.10_1_9:116303752-116304061:+|nuORF	REV__ENST00000317613.10_1_9:116303752-116304061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	410.89862060546875	4	410.746179	1638.95561	0.889	0.00036515	-1.6189	-0.00066496	-0.7299	-0.00029981	410.7455167830308	18.673	1.4327	18.516	17.805	19.237	-0.15637					88	28	4	0	0	0	0.024896	1	302	302		3.4087	0.38274	1	452270	+		89471	30299	62248	62350	99541	99541					0.16169245996070458
WIHFTRRRRRR	11	Unmodified	_WIHFTRRRRRR_					0	0	0			REV__ENST00000317613.10_1_9:116303752-116304061:+|nuORF	REV__ENST00000317613.10_1_9:116303752-116304061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	410.8988037109375	4	410.746179	1638.95561	0.52237	0.00021456	-1.3248	-0.00054414	-0.80238	-0.00032958	410.9963168728997	18.742	1.931	18.538	17.816	19.747	-0.20371					94	38	4	0	0	0	0.024873	1	292	292		9.6461	6.4348	1	417480	+		89472	30299	62248	62350	99542	99542					0.16169245996070458
WIHFTRRRRRR	11	Unmodified	_WIHFTRRRRRR_					0	0	0			REV__ENST00000317613.10_1_9:116303752-116304061:+|nuORF	REV__ENST00000317613.10_1_9:116303752-116304061:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		4	410.746179	1638.95561	2.7827	0.001143	-3.4357	-0.0014112	-0.65304	-0.00026823	410.99547665166153	18.794	1.3416	18.551	17.825	19.167	-0.24256	0.016006	-0.0024889	NaN	9.6461	88	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359740	+		89473	30299	62248	62350							0.16169245996070458
WIIAAGPGVR	10	Unmodified	_WIIAAGPGVR_					0	0	0			REV__ENST00000571814.1_2_17:81042314-81042740:+|nuORF	REV__ENST00000571814.1_2_17:81042314-81042740:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	520.283935546875	2	520.306001	1038.59745	0.56209	0.00029246	-0.47286	-0.00024603	0.089231	4.6427E-05	520.3071358994624	105.1	0.61696	104.93	104.47	105.09	-0.16485					48	22	3	0	0	0	0.03519	1	13077	13077		35.618	25.913	1	85156	+		89474	35415	62249	62351	99543	99543					0.07969459296691639
WIIGEQNVL	9	Unmodified	_WIIGEQNVL_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2957153320312	2	536.295299	1070.57605	0.24224	0.00012991	3.8857	0.0020839	4.128	0.0022138	536.2983486733813	74.566	2.1755	74.566	74.34	76.516	0					83	55	3	0	0	0	0.31037	1	9128	9128		74.255	0.28031	1	2790100			89475	948	62250	62352	99544	99544					0.04358029477339187
WIKEKIYVL	9	Unmodified	_WIKEKIYVL_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.3607177734375	2	596.360442	1190.70633	-0.75037	-0.00044749	0.80783	0.00048176	0.05746	3.4267E-05	596.3607914574446	58.977	1.4854	58.789	58.471	59.956	-0.18795					96	37	4	0	0	0	0.015752	4	6489	6489;6498;6510;6522		158.07	80.2	1	6213400			89476	2234	62251	62353	99545;99546;99547;99548	99545					0.11860625476333553
WIKEKIYVL	9	Unmodified	_WIKEKIYVL_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	596.3604125976562	2	596.360442	1190.70633	-0.36071	-0.00021511	0.31419	0.00018737	-0.046518	-2.7741E-05	596.3604791997334	58.847	1.3518	58.665	58.347	59.699	-0.18133					102	33	5	0	0	0	0.013293	3	6485	6473;6485;6498		176.09	88.39	1	5924000			89477	2234	62251	62353	99549;99550;99551	99550					0.11860625476333553
WIKEKIYVL	9	Unmodified	_WIKEKIYVL_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.3603515625	2	596.360442	1190.70633	0.24349	0.00014521	-0.36615	-0.00021836	-0.12267	-7.3154E-05	596.3601142390291	59.004	1.3818	58.763	58.461	59.843	-0.24165					88	34	4	0	0	0	0.015752	4	6504	6483;6491;6504;6517		158.07	75.324	1	8039200			89478	2234	62251	62353	99552;99553;99554;99555	99554					0.11860625476333553
WILKENIS	8	Unmodified	_WILKENIS_					0	0	0			REV__nc|ENSG00000167377|P17027-2|ZNF23	REV__nc|ENSG00000167377|P17027-2|ZNF23	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	500.8056640625	2	501.784567	1001.55458	0.88746	0.00044532	-0.21059	-0.00010567	0.67688	0.00033965	501.78393321998107	60.002	0.54495	60.002	59.559	60.104	0					21	14	2	0	0	0	0.027866	1	6843	6843		40.573	18.613	1	135490	+		89479	26135	62252	62354	99556	99556					0.05386644448606148
WILPLGEDL	9	Unmodified	_WILPLGEDL_					0	0	0		ENST00000238497.9_1_18:61064415-61066538:-|nuORF	ENST00000238497.9_1_18:61064415-61066538:-|nuORF	ENST00000238497.9_1_18:61064415-61066538:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.292724609375	2	528.292225	1054.5699	-0.98512	-0.00052043	-3.4455	-0.0018202	-4.4306	-0.0023407	528.2904469993462	54.683	1.1455	54.683	54.428	55.573	0					75	32	3	0	0	0	0.64155	1	5986	5986		50.025	0.48849	1	10560000			89480	11267	62253	62355	99557	99557					0.04479511245813228
WILSVTSKT	9	Unmodified	_WILSVTSKT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7468872070312	2	517.797675	1033.5808	-0.53911	-0.00027915	-0.16015	-8.2926E-05	-0.69926	-0.00036207	517.7970291156104	47.896	0.48133	47.799	47.52	48.002	-0.097553					18	12	2	0	0	0	0.024523	1	4680	4680		29.15	10.887	1	177810	+		89481	25017	62254	62356	99558	99558					0.06534913620112093
WINEKEAAL	9	Unmodified	_WINEKEAAL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;ENST00000475367.1_1_9:131356439-131361310:+|nuORF	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.2845458984375	2	537.284931	1072.55531	-0.19453	-0.00010452	0.84828	0.00045577	0.65375	0.00035125	537.2853387982121	50.853	0.48144	50.672	50.426	50.908	-0.18071					30	12	3	0	0	0	0.19099	1	5189	5189		90.37	28.262	1	2299400			89482	10033	62255	62357	99559	99559					0.021934390976412033
WINEKEAAL	9	Unmodified	_WINEKEAAL_					0	0	0		nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;nc|ENSG00000197694|Q13813-3|SPTAN1;ENST00000475367.1_1_9:131356439-131361310:+|nuORF	nc|ENSG00000197694|Q13813|SPTAN1	nc|ENSG00000197694|Q13813|SPTAN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	537.284931	1072.55531	0.081963	4.4038E-05	0.78994	0.00042442	0.8719	0.00046846	537.2851923225343	50.79	0.59393	50.678	50.341	50.934	-0.11163	-0.023279	-5.2708E-05	NaN	90.37	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1834300			89483	10033	62255	62357							0.021934390976412033
WIPEPQVI	8	Unmodified	_WIPEPQVI_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	491.2728576660156	2	491.273835	980.533118	-0.36039	-0.00017705	-3.9466	-0.0019388	-4.3069	-0.0021159	491.27179149496607	30.986	0.91002	30.801	30.49	31.4	-0.18452					54	22	5	0	0	0	0.94517	1	2040	2040		45.952	3.5558	1	1607200			89484	7371	62256	62358	99560	99560					0.04207259419899856
WIPLLLELL	9	Unmodified	_WIPLLLELL_					0	0	0			REV__nc|ENSG00000166206|P28472-2|GABRB3	REV__nc|ENSG00000166206|P28472-2|GABRB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.3530883789062	2	555.352086	1108.68962	0.80031	0.00044446	1.968	0.0010929	2.7683	0.0015374	555.3530192204877	99.747	0.68683	99.622	99.234	99.921	-0.12458					49	18	4	0	0	0	0.88411	1	12358	12358		33.516	0	1	835110	+		89485	36884	62257	62359	99561	99561					0.13962124590375424
WIPPLCIPL	9	Unmodified	_WIPPLCIPL_					0	0	0			REV__NLGN4X|p.W127Cfs*9|1|0.21|ENSG00000146938|chrX:6151086-6151086|C/-|frameshift_variant	REV__NLGN4X|p.W127Cfs*9|1|0.21|ENSG00000146938|chrX:6151086-6151086|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.2511596679688	2	526.304081	1050.59361	-0.36112	-0.00019006	2.1608	0.0011372	1.7997	0.00094719	526.3054991704375	77.1	0.8728	77.1	76.799	77.672	0					29	20	3	0	0	0	0.024475	1	9515	9515		29.842	0	1	474750	+		89486	37285	62258	62360	99562	99562					0.07033653478606539
WIRCLLKN	8	Unmodified	_WIRCLLKN_					0	0	0		ENST00000449570.6_1_3:9798246-9807816:+|nuORF	ENST00000449570.6_1_3:9798246-9807816:+|nuORF	ENST00000449570.6_1_3:9798246-9807816:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3033447265625	2	523.302404	1044.59026	0.14525	7.6008E-05	1.6683	0.00087305	1.8136	0.00094906	523.3030951306606	87.195	3.4812	87.058	86.268	89.75	-0.13734					335	82	5	0	0	0	0.91239	1	10572	10572		50.025	4.0523	1	14210000			89487	14501	62259	62361	99563	99563					0.06974403424624143
WIRRGMKG	8	Oxidation (M)	_WIRRGM(Oxidation (M))KG_		WIRRGM(1)KG		WIRRGM(63)KG	0	0	1		nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.2824401855469	2	510.282003	1018.54945	0.7945	0.00040542	0.51747	0.00026406	1.312	0.00066947	510.28221132871454	97.656	0.97428	97.52	97.014	97.988	-0.1367					45	22	3	0	0	0	0.75307	1	12100	12100		62.978	7.4742	1	276110			89488	18576	62260	62362	99564	99564		589			0.04092062105030436
WISICKRMKL	10	Unmodified	_WISICKRMKL_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|21|2|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|21|2|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0269189265778509|0.4902543273978149|1.07|511.0|21|2|sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	639.3629150390625	2	639.364679	1276.7148	-1.3694	-0.00087557	-0.8624	-0.00055139	-2.2318	-0.001427	639.3639435468325	110.2	0.52441	110.06	109.85	110.37	-0.13983					60	20	4	0	0	0	1.1307	1	13538	13538		26.693	6.6961	1	470490			89489	17812	62261	62363	99565	99565					0.08751532849646537
WISLWTSPL	9	Unmodified	_WISLWTSPL_					0	0	0		ENST00000501695.3_1_5:147758402-147763328:-|nuORF	ENST00000501695.3_1_5:147758402-147763328:-|nuORF	ENST00000501695.3_1_5:147758402-147763328:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	551.798583984375	2	551.800217	1101.58588	-0.47777	-0.00026363	-3.8526	-0.0021258	-4.3303	-0.0023895	551.798036535745	55.848	1.0235	55.692	55.26	56.284	-0.15601					80	27	4	0	0	0	0.29104	1	6179	6179		76.847	8.3619	1	3124900			89490	15655	62262	62364	99566	99566					0.03915217482699518
WITLLVFIN	9	Unmodified	_WITLLVFIN_					0	0	0			REV__ENSG00000170989|ENST00000305352|S1PR1	REV__ENSG00000170989|ENST00000305352|S1PR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2654418945312	2	559.83406	1117.65357	-0.45342	-0.00025384	-2.5664	-0.0014368	-3.0198	-0.0016906	559.8319042931413	79.992	0.37744	79.992	79.87	80.247	0					13	8	3	0	0	0	0.024457	1	9934	9934		45.952	7.1458	1	62868	+		89491	26528	62263	62365	99567	99567					0.09944667413515162
WIVKSPVQRGI	11	Unmodified	_WIVKSPVQRGI_					0	0	0			REV__ENSG00000101189|ENST00000370487|MRGBP	REV__ENSG00000101189|ENST00000370487|MRGBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	641.8828125	2	641.885147	1281.75574	-1.4215	-0.00091243	-2.7615	-0.0017725	-4.183	-0.002685	641.8831708683472	95.913	3.2078	95.776	94.938	98.146	-0.13689					268	74	6	0	0	0	1.0292	1	11769	11769		30.318	2.2362	1	3558500	+		89492	21195	62264	62366	99568	99568					0.12613333485114708
WIYCPGDAI	9	Unmodified	_WIYCPGDAI_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;nc|ENSG00000113593|Q96BP3-2|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	518.7803955078125	2	519.241678	1036.4688	-1.1662	-0.00060553	-0.47309	-0.00024565	-1.6393	-0.00085118	519.241704479178	25.423	0.36253	25.423	25.248	25.611	0					12	8	2	0	0	0	0.024466	1	1191	1191		42.474	18.272	1	48630			89493	3307	62265	62367	99569	99569					-0.04797263728573853
WKAVQELW	8	Unmodified	_WKAVQELW_					0	0	0		ENST00000561688.1_1_16:2294286-2301561:-|nuORF;ENST00000563029.5_1_16:2293317-2301515:-|nuORF;nc|ENSG00000167969|P42126-2|ECI1;ENSG00000167969|ENST00000301729|ECI1	ENST00000561688.1_1_16:2294286-2301561:-|nuORF	ENST00000561688.1_1_16:2294286-2301561:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.2821044921875	2	530.284734	1058.55492	-1.0052	-0.00053302	-3.2666	-0.0017322	-4.2718	-0.0022653	530.2831082811714	56.126	1.1877	55.91	55.168	56.356	-0.21551					74	31	5	0	0	0	0.87148	1	6057	6057		53.351	2.016	1	3022600			89494	7757	62266	62368	99570	99570					0.027980641684507646
WKAVQELWLRL	11	Unmodified	_WKAVQELWLRL_					0	0	0		ENST00000561688.1_1_16:2294286-2301561:-|nuORF;ENST00000563029.5_1_16:2293317-2301515:-|nuORF;nc|ENSG00000167969|P42126-2|ECI1;ENSG00000167969|ENST00000301729|ECI1	ENST00000561688.1_1_16:2294286-2301561:-|nuORF	ENST00000561688.1_1_16:2294286-2301561:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.283203125	3	481.281995	1440.82415	0.97727	0.00047034	2.6435	0.0012723	3.6208	0.0017426	481.283231723936	100.5	0.43654	100.37	100.13	100.56	-0.13364					18	11	2	0	0	0	1.0855	1	12449	12449		15.337	6.5382	1	211450			89495	7757	62267	62369	99571	99571					0.12137578064971422
WKDYKLAF	8	Unmodified	_WKDYKLAF_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.2589111328125	2	535.78711	1069.55967	-1.0813	-0.00057936	-2.551	-0.0013668	-3.6323	-0.0019462	535.785675536736	53.638	0.80902	53.501	53.244	54.053	-0.13617					51	24	3	0	0	0	0.027866	1	5604	5604		38.806	12.01	1	1904100			89496	2300	62268	62370	99572	99572					0.027669483112276794
WKGLKNRYL	9	Unmodified	_WKGLKNRYL_					0	0	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.34326171875	2	589.345658	1176.67676	-2.3876	-0.0014071	-2.2959	-0.0013531	-4.6836	-0.0027602	589.3441689253345	90.709	2.4155	90.709	89.313	91.729	0					177	57	4	0	0	0	0.92825	1	11462	11462		30.504	0.18592	1	4758600	+		89497	25913	62269	62371	99573	99573					0.09549106250847217
WKKERKEMRQF	11	Unmodified	_WKKERKEMRQF_					0	0	0		nc|ENSG00000111696|Q86UY8-2|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.8010864257812	3	522.61716	1564.82965	2.0185	0.0010549	4.1193	0.0021528	6.1378	0.0032077	522.9531922090853	19.693	0.47942	19.759	19.587	20.067	0.066195					10	9	2	0	0	0	0.024879	1	424	424		12.957	3.7457	1	18184			89498	18171	62270	62372	99574	99574					0.06982933585140927
WKKIQHSN	8	Unmodified	_WKKIQHSN_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3;nc|ENSG00000152520|Q58A45-4|PAN3;ENST00000503791.5_1_13:28712794-28846220:+|nuORF	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	520.7843627929688	2	520.785433	1039.55631	-0.25442	-0.0001325	-2.3175	-0.0012069	-2.5719	-0.0013394	520.7841242839409	106.79	1.3178	106.67	106.03	107.35	-0.1238					154	49	6	0	0	0	1.0574	1	13315	13315		25.45	0.93098	1	3782600			89499	6278	62271	62373	99575	99575					0.0381169825723191
WKKKRKLEKRI	11	Unmodified	_WKKKRKLEKRI_					0	0	0			REV__nc|ENSG00000291135|Q92637-3|FCGR1BP	REV__nc|ENSG00000291135|Q92637-3|FCGR1BP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.3115234375	3	504.999822	1511.97764	-0.39121	-0.00019756	0.084184	4.2513E-05	-0.30702	-0.00015505	505.00101027927	35.172	0.18408	35.216	35.12	35.305	0.04406					5	4	2	0	0	0	0.024896	1	2623	2623		6.3209	6.3209	1	31506	+		89500	24713	62272	62374	99576	99576					0.24212612901305874
WKKKVKSL	8	Unmodified	_WKKKVKSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.29290771484375	2	508.834394	1015.65424	-0.14171	-7.2104E-05	-1.1253	-0.00057257	-1.267	-0.00064467	508.8337669274571	53.141	0.41537	52.951	52.793	53.208	-0.18982					16	10	2	0	0	0	0.027866	1	5575	5575		40.573	7.7602	1	112930			89501	3488	62273	62375	99577	99577					0.1470350685323183
WKKLQLGE	8	Unmodified	_WKKLQLGE_					0	0	0		ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	ENSG00000204291|ENST00000375001|COL15A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2935791015625	2	501.292559	1000.57057	0.18746	9.3974E-05	-0.50911	-0.00025521	-0.32165	-0.00016124	501.2921172049721	50.437	1.7659	50.331	49.449	51.215	-0.10558					124	46	4	0	0	0	0.47665	1	5117	5117		87.754	8.3033	1	12672000			89502	10324	62274	62376	99578	99578					0.07030350685522535
WKKTSKPMK	9	Unmodified	_WKKTSKPMK_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3302612304688	2	567.328619	1132.64269	-0.4315	-0.0002448	2.1807	0.0012372	1.7492	0.00099239	567.3298235785311	90.882	3.4806	90.87	89.963	93.444	-0.012383					334	83	5	0	0	0	0.87448	1	11717	11717		34.173	6.2903	1	13648000	+		89503	27306	62275	62377	99579	99579					0.08166941767581193
WKLKKIID	8	Unmodified	_WKLKKIID_					0	0	0			REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	521.7803344726562	2	522.334227	1042.6539	0.3209	0.00016762	-1.8148	-0.00094793	-1.4939	-0.00078032	522.333063822855	85.633	0.37422	85.633	85.414	85.789	0					11	8	2	0	0	0	0.027866	1	10767	10767		31.955	0	1	58040	+		89504	34525	62276	62378	99580	99580					0.13428087133365807
WKNFQVTL	8	Unmodified	_WKNFQVTL_					0	0	0		nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.318359375	2	518.284734	1034.55492	0.02902	1.5041E-05	3.1931	0.0016549	3.2221	0.00167	518.28635966285	77.533	0.46246	77.322	77.122	77.585	-0.21087					15	10	2	0	0	0	0.027866	1	9521	9521		37.159	7.3176	1	149630			89505	18070	62277	62379	99581	99581					0.03902064168482866
WKQLLGPR	8	Unmodified	_WKQLLGPR_					0	0	0		ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.82122802734375	2	499.300719	996.586885	3.1271	0.0015614	4.1469	0.0020706	7.2741	0.003632	499.3026631654814	19.104	0.69167	19.17	18.945	19.637	0.066195					22	13	3	0	0	0	0.027866	1	382	382		20.482	0	1	69486			89506	1815	62278	62380	99582	99582					0.08845476642284211
WKQPNLISH	9	Unmodified	_WKQPNLISH_					0	0	0			REV__nc|ENSG00000164663|Q70CQ1-2|USP49	REV__nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2792358398438	2	561.806365	1121.59818	0.76048	0.00042725	-2.9187	-0.0016397	-2.1582	-0.0012125	562.3058019471274	85.372	0.21335	85.223	85.114	85.327	-0.14967					7	4	2	0	0	0	0.024427	1	10361	10361		34.173	0	1	55959	+		89507	25788	62279	62381	99583	99583					0.04224253945744749
WKRKQMMVLRW	11	Unmodified	_WKRKQMMVLRW_					0	0	0		ENST00000483493.6_1_9:26884817-26892259:-|nuORF	ENST00000483493.6_1_9:26884817-26892259:-|nuORF	ENST00000483493.6_1_9:26884817-26892259:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7568969726562	3	521.291731	1560.85336	-0.92091	-0.00048006	-3.493	-0.0018209	-4.4139	-0.0023009	521.29009062203	26.172	0.23364	25.936	25.803	26.037	-0.23603					10	6	2	0	0	0	0.024886	1	1298	1298		10.104	0.8921	1	101220			89508	15285	62280	62382	99584	99584					0.09537075817956975
WKTNDLPF	8	Unmodified	_WKTNDLPF_					0	0	0		ENSG00000070019|ENST00000261170|GUCY2C	ENSG00000070019|ENST00000261170|GUCY2C	ENSG00000070019|ENST00000261170|GUCY2C	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7607116699219	2	510.761092	1019.50763	1.0439	0.0005332	-1.8209	-0.00093003	-0.77695	-0.00039684	510.7599786362728	17.834	1.1883	17.68	17.408	18.596	-0.15403					43	23	3	0	0	0	0.94517	1	241	241		45.952	3.5558	1	147340			89509	1414	62281	62383	99585	99585					-0.001342151025255589
WKTPTYGKLW	10	Unmodified	_WKTPTYGKLW_					0	0	0		ENST00000380290.7_1_15:64365092-64365212:-|nuORF	ENST00000380290.7_1_15:64365092-64365212:-|nuORF	ENST00000380290.7_1_15:64365092-64365212:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.350341796875	2	640.345323	1278.67609	-1.0582	-0.00067764	1.6824	0.0010773	0.62418	0.00039969	640.8495753225395	100.77	0.52271	100.64	100.56	101.09	-0.13364					17	13	3	0	0	0	1.0271	1	12499	12499		42.396	3.1433	1	127990			89510	13305	62282	62384	99586	99586					0.047902668111191815
WKTYYARN	8	Unmodified	_WKTYYARN_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.8079833984375	2	551.277441	1100.54033	0.22235	0.00012257	-1.6797	-0.00092597	-1.4573	-0.0008034	551.2774777370346	56.717	1.1691	56.515	55.895	57.064	-0.20208					109	30	6	0	0	0	0.027866	1	6090	6090		49.442	0	1	883450			89511	5790	62283	62385	99587	99587					-0.005920079796851496
WKVAARELT	9	Unmodified	_WKVAARELT_					0	0	0		ENST00000343882.10_1_6:108881050-108881200:+|nuORF	ENST00000343882.10_1_6:108881050-108881200:+|nuORF	ENST00000343882.10_1_6:108881050-108881200:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	536.7472534179688	2	537.308741	1072.60293	0.2623	0.00014094	-4.2116	-0.0022629	-3.9493	-0.002122	537.3067615882202	71.076	0.98257	71.076	70.241	71.223	0					44	23	3	0	0	0	0.024541	1	8491	8491		26.693	6.2111	1	482500			89512	12536	62284	62386	99588	99588					0.06953138088488231
WKVAARELT	9	Unmodified	_WKVAARELT_					0	0	0		ENST00000343882.10_1_6:108881050-108881200:+|nuORF	ENST00000343882.10_1_6:108881050-108881200:+|nuORF	ENST00000343882.10_1_6:108881050-108881200:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	537.308741	1072.60293	0.44474	0.00023896	-4.3334	-0.0023284	-3.8887	-0.0020894	537.3062810440871	71.011	0.76823	70.718	70.263	71.031	-0.29291	-0.15703	0.0028481	NaN	26.693	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210500			89513	12536	62284	62386							0.06953138088488231
WKVAARELT	9	Unmodified	_WKVAARELT_					0	0	0		ENST00000343882.10_1_6:108881050-108881200:+|nuORF	ENST00000343882.10_1_6:108881050-108881200:+|nuORF	ENST00000343882.10_1_6:108881050-108881200:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.308741	1072.60293	-0.38501	-0.00020687	-11.706	-0.00629	-12.091	-0.0064969	537.3044934717176	71.089	0.30352	70.832	70.651	70.955	-0.25712	-0.04396	-0.0050751	NaN	26.693	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91837			89514	12536	62284	62386							0.06953138088488231
WKVSKSSKL	9	Unmodified	_WKVSKSSKL_					0	0	0		IL1RAPL2|p.G538V|1|0.2|ENSG00000189108|chrX:105767213-105767213|G/T|missense_variant	IL1RAPL2|p.G538V|1|0.2|ENSG00000189108|chrX:105767213-105767213|G/T|missense_variant	IL1RAPL2|p.G538V|1|0.2|ENSG00000189108|chrX:105767213-105767213|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8168334960938	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	0.99229	1	10583	10583		21.96	2.8564	1	4853400			89515	17763	62285	62387	99589	99589					0.09498308748334239
WKWEKPYLKNR	11	Unmodified	_WKWEKPYLKNR_					0	0	0		ENST00000593281.1_1_19:11541422-11545627:-|nuORF;nc|ENSG00000198003|A5D8V7-2|ODAD3;ENSG00000198003|ENST00000356392|ODAD3	ENST00000593281.1_1_19:11541422-11545627:-|nuORF	ENST00000593281.1_1_19:11541422-11545627:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.31396484375	3	516.620899	1546.84087	-0.27243	-0.00014075	3.3949	0.0017539	3.1225	0.0016131	516.6214862918284	97.973	0.2493	97.973	97.814	98.063	0					7	5	2	0	0	0	0.024834	1	12518	12518		23.378	13.732	1	22537			89516	10083	62286	62388	99590	99590					0.08932078950942923
WKWLRHRHRQQ	11	Unmodified	_WKWLRHRHRQQ_					0	0	0		ENST00000555122.1_1_14:105406018-105406159:-|nuORF	ENST00000555122.1_1_14:105406018-105406159:-|nuORF	ENST00000555122.1_1_14:105406018-105406159:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.3010864257812	3	544.302786	1629.88653	1.0809	0.00058834	-4.4763	-0.0024364	-3.3954	-0.0018481	544.3001135190185	17.287	0.252	17.133	17.007	17.259	-0.15403					14	4	4	0	0	0	1.1077	1	170	170		9.2118	6.36	1	101620			89517	16674	62287	62389	99591	99591					0.09678161976535193
WKWLRHRHRQQ	11	Unmodified	_WKWLRHRHRQQ_					0	0	0		ENST00000555122.1_1_14:105406018-105406159:-|nuORF	ENST00000555122.1_1_14:105406018-105406159:-|nuORF	ENST00000555122.1_1_14:105406018-105406159:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	544.302786	1629.88653	4.2068	0.0022897	-7.5337	-0.0041006	-3.327	-0.0018109	544.2984930387636	17.371	0.30142	17.12	16.974	17.276	-0.25049	0.022634	-0.00448	NaN	9.2118	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31350			89518	16674	62287	62389							0.09678161976535193
WKWPPLAL	8	Unmodified	_WKWPPLAL_					0	0	0			REV__ENST00000342992.10_3_2:179400465-179400825:-|nuORF	REV__ENST00000342992.10_3_2:179400465-179400825:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	506.2652893066406	2	505.794738	1009.57492	-1.1386	-0.00057589	-4.0436	-0.0020452	-5.1822	-0.0026211	505.79261901784895	62.773	0.41205	62.534	62.451	62.863	-0.23926					14	9	2	0	0	0	0.027866	1	7297	7297		42.474	0.078325	1	243080	+		89519	30655	62288	62390	99592	99592					0.07051859899070223
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	535.8155517578125	2	535.815867	1069.61718	0.017275	9.2563E-06	-0.60179	-0.00032245	-0.58451	-0.00031319	535.8155716659852	71.572	2.0462	71.572	71.026	73.072	0					148	51	4	0	0	0	0.0090779	7	8666	8644;8655;8666;8679;8691;8704;8784		235.12	112.94	1	24490000			89520	8540	62289	62391	99593;99594;99595;99596;99597;99598;99599	99595					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	535.81591796875	2	535.815867	1069.61718	0.007473	4.0041E-06	-0.6461	-0.00034619	-0.63863	-0.00034219	535.8155350292227	71.956	2.0366	71.668	71.113	73.15	-0.28857					155	51	4	0	0	0	0.014738	7	8683	8663;8672;8683;8695;8707;8720;8726		204.62	92.976	1	27693000			89521	8540	62289	62391	99600;99601;99602;99603;99604;99605;99606	99602					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	535.8154296875	2	535.815867	1069.61718	-0.31265	-0.00016752	-0.33	-0.00017682	-0.64265	-0.00034434	535.8156838994196	71.625	2.0559	71.635	71.013	73.069	0.010735					154	52	4	0	0	0	0.013337	6	8583	8583;8594;8606;8618;8630;8642		190.26	90.887	1	27273000			89522	8540	62289	62391	99607;99608;99609;99610;99611;99612	99607					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.815185546875	2	535.815867	1069.61718	-0.059061	-3.1646E-05	-0.33227	-0.00017803	-0.39133	-0.00020968	535.8156227318361	71.84	1.9092	71.565	71.144	73.053	-0.2751					131	45	5	0	0	0	0.0090779	6	8396	8362;8372;8385;8396;8408;8423		235.12	112.94	1	8917500			89523	8540	62289	62391	99613;99614;99615;99616;99617;99618	99616					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.814697265625	2	535.815867	1069.61718	-0.16732	-8.9654E-05	-0.32845	-0.00017599	-0.49577	-0.00026564	535.8156523710111	71.722	2.1838	71.46	71.075	73.259	-0.26199					127	52	4	0	0	0	0.013065	6	8430	8373;8382;8393;8405;8417;8430		204.62	88.69	1	10133000			89524	8540	62289	62391	99619;99620;99621;99622;99623;99624	99624					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.8157958984375	2	535.815867	1069.61718	-0.21337	-0.00011433	-0.34582	-0.0001853	-0.55919	-0.00029962	535.8156390685916	71.646	2.1744	71.44	71.007	73.182	-0.20613					126	52	4	0	0	0	0.013337	6	8361	8339;8350;8361;8373;8385;8400		190.26	82.174	1	9778500			89525	8540	62289	62391	99625;99626;99627;99628;99629;99630	99627					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7296142578125	2	535.815867	1069.61718	-0.76215	-0.00040837	-3.803	-0.0020377	-4.5651	-0.0024461	535.8137111672187	60.055	0.68667	59.807	59.571	60.258	-0.24842					33	17	3	0	0	0	0.024263	1	6647	6647		51.335	1.3109	1	463440			89526	8540	62289	62391	99631	99631					0.08515790516798916
WLAERLGL	8	Unmodified	_WLAERLGL_					0	0	0		ENST00000479372.1_1_1:150459926-150460531:+|nuORF;ENST00000369053.3_1_1:150459926-150461710:+|nuORF;nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	ENST00000479372.1_1_1:150459926-150460531:+|nuORF	ENST00000479372.1_1_1:150459926-150460531:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	479.2779235839844	2	479.279452	956.544351	-0.56358	-0.00027011	-3.3047	-0.0015839	-3.8683	-0.001854	479.2777527970762	83.042	4.5304	83.068	81.291	85.822	0.026558					304	107	4	0	0	0	1.0239	1	10258	10258		33.516	0	1	4947400			89527	5641	62290	62392	99632	99632					0.0643408151404401
WLAGKVGLW	9	Unmodified	_WLAGKVGLW_					0	0	0			REV__ENST00000301019.8_1_16:88874851-88875028:+|nuORF	REV__ENST00000301019.8_1_16:88874851-88875028:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	515.295654296875	2	515.297645	1028.58074	-0.26718	-0.00013768	-4.3156	-0.0022238	-4.5828	-0.0023615	515.2956267735008	73.368	0.83951	73.178	72.844	73.683	-0.19026					74	20	5	0	0	0	0.18276	1	8604	8604		92.191	6.3288	1	13528000	+		89528	30052	62291	62393	99633	99633					0.06758958410750893
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.8695068359375	2	619.870697	1237.72684	-0.39229	-0.00024317	-1.7083	-0.0010589	-2.1005	-0.0013021	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	0.67308	5	11969	11969;11992;12017;12029;12074		47.916	16.386	1	4658300	+		89529	34420	62292	62394	99634;99635;99636;99637;99638	99634					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	619.8695068359375	2	619.870697	1237.72684	0.0094929	5.8843E-06	-2.0395	-0.0012642	-2.03	-0.0012583	619.8692897365571	94.224	2.8908	94.224	93.33	96.221	-0.00022888					263	68	5	0	0	0	0.52323	7	11915	11915;11927;11939;11951;12011;12034;12046		57.811	20.652	1	4373200	+		89530	34420	62292	62394	99639;99640;99641;99642;99643;99644;99645	99639					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8688354492188	2	619.870697	1237.72684	-0.48862	-0.00030288	-1.6876	-0.0010461	-2.1762	-0.001349	619.8694795106298	92.383	2.3242	92.392	91.112	93.437	0.009407					190	55	4	0	0	0	0.80658	3	11636	11636;11659;11682		38.806	9.6566	1	1566400	+		89531	34420	62292	62394	99646;99647;99648	99646					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8694458007812	2	619.870697	1237.72684	-1.0156	-0.00062956	-1.0453	-0.00064793	-2.0609	-0.0012775	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	0.80658	2	11922	11922;12017		38.806	7.2763	1	4459000	+		89532	34420	62292	62394	99649;99650	99649					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	619.8692626953125	2	619.870697	1237.72684	-0.66003	-0.00040914	-1.389	-0.00086098	-2.049	-0.0012701	619.869728102848	94.347	2.7854	94.209	93.355	96.141	-0.13779					257	64	5	0	0	0	0.67308	6	11661	11553;11589;11625;11661;11708;11732		47.916	18.746	1	5229800	+		89533	34420	62292	62394	99651;99652;99653;99654;99655;99656	99654					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8689575195312	2	619.870697	1237.72684	-0.98359	-0.0006097	-1.4219	-0.00088142	-2.4055	-0.0014911	619.8696098427067	92.569	2.4148	92.447	90.995	93.41	-0.12242					175	56	4	0	0	0	0.83071	2	11376	11376;11389		37.159	4.3467	1	1625000	+		89534	34420	62292	62394	99657;99658	99657					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8693237304688	2	619.870697	1237.72684	-0.47108	-0.00029201	-1.5249	-0.00094523	-1.996	-0.0012372	619.8695961368735	94.371	3.3852	94.249	93.322	96.707	-0.12215					317	78	5	0	0	0	0.80658	5	11656	11620;11632;11656;11667;11751		38.806	7.1719	1	4765600	+		89535	34420	62292	62394	99659;99660;99661;99662;99663	99661					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8693237304688	2	619.870697	1237.72684	0.12405	7.6895E-05	-2.4481	-0.0015175	-2.324	-0.0014406	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	0.67308	1	11360	11360		47.916	12.297	1	1596200	+		89536	34420	62292	62394	99664	99664					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.8696899414062	2	619.870697	1237.72684	-0.13269	-8.2249E-05	-1.8989	-0.0011771	-2.0316	-0.0012593	619.8693988749709	94.387	3.4382	94.239	93.348	96.786	-0.14771					313	79	5	0	0	0	0.70186	3	11612	11612;11648;11719		45.952	16.782	1	4730400	+		89537	34420	62292	62394	99665;99666;99667	99665					0.11748653699328315
WLAVYLLL	8	Unmodified	_WLAVYLLL_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	495.80401611328125	2	495.804771	989.59499	-0.50371	-0.00024974	3.6271	0.0017984	3.1234	0.0015486	495.80652594744515	90.022	1.3395	89.897	89.373	90.712	-0.12512					80	31	4	0	0	0	0.9599	1	11011	11011		43.626	5.8145	1	722730	+		89538	24874	62293	62395	99668	99668					0.09977610839052886
WLAVYVMKP	9	Unmodified	_WLAVYVMKP_					0	0	0			REV__ENST00000370384.7_1_6:74019628-74019772:-|nuORF	REV__ENST00000370384.7_1_6:74019628-74019772:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.830078125	2	553.806988	1105.59942	-0.61043	-0.00033806	4.1305	0.0022875	3.5201	0.0019494	553.8092078730072	89.941	0.81939	89.941	89.564	90.384	0					23	19	2	0	0	0	0.024325	1	11338	11338		31.955	14.487	1	134460	+		89539	31125	62294	62396	99669	99669					0.050847519902845306
WLAVYVMKP	9	Unmodified	_WLAVYVMKP_					0	0	0			REV__ENST00000370384.7_1_6:74019628-74019772:-|nuORF	REV__ENST00000370384.7_1_6:74019628-74019772:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.8311767578125	2	553.806988	1105.59942	-0.11255	-6.2331E-05	3.4877	0.0019315	3.3751	0.0018692	553.8090120330833	89.916	0.53249	89.9	89.583	90.116	-0.016708					23	12	2	0	0	0	0.024325	1	11345	11345		31.955	6.3808	1	123740	+		89540	31125	62294	62396	99670	99670					0.050847519902845306
WLCTHGSP	8	Unmodified	_WLCTHGSP_					0	0	0			REV__ENST00000570769.5_1_16:3661855-3661948:+|nuORF	REV__ENST00000570769.5_1_16:3661855-3661948:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	449.74127197265625	2	450.705263	899.395972	-0.89896	-0.00040516	-3.4549	-0.0015572	-4.3539	-0.0019623	450.7038186316637	40.355	0.34534	40.125	39.851	40.197	-0.23021					15	8	2	0	0	0	0.027866	1	3451	3451		42.474	39.315	1	69793	+		89541	35395	62295	62397	99671	99671					-0.057749727313193944
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7764892578125	2	537.776939	1073.53933	-0.72064	-0.00038754	0.93017	0.00050023	0.20953	0.00011268	537.7773364423226	79.238	0.83433	79.238	78.91	79.744	0					61	19	4	0	0	0	0.23085	2	9832	9819;9832		84.916	13.038	1	2085300			89542	5806	62296	62398	99672;99673	99673					0.005497328607589225
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	537.7760620117188	2	537.776939	1073.53933	-1.3566	-0.00072955	1.4186	0.00076291	0.062028	3.3357E-05	537.7776030119383	79.449	0.87725	79.277	78.902	79.78	-0.17226					64	20	4	0	0	0	0.082191	2	9807	9807;9831		116.9	31.988	1	1839600			89543	5806	62296	62398	99674;99675	99674					0.005497328607589225
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	537.7758178710938	2	537.776939	1073.53933	-0.70425	-0.00037873	0.71417	0.00038406	0.0099194	5.3344E-06	537.777225572265	79.232	0.90788	79.251	78.735	79.643	0.018677					58	19	4	0	0	0	0.2508	2	9742	9742;9767		82.241	12.613	1	2046700			89544	5806	62296	62398	99676;99677	99676					0.005497328607589225
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.7767944335938	2	537.776939	1073.53933	0.33107	0.00017804	-0.11118	-5.9792E-05	0.21988	0.00011825	537.7768255231804	79.461	1.0854	79.215	78.822	79.907	-0.2465					74	25	4	0	0	0	0.014988	4	9506	9472;9482;9494;9506		161.9	43.155	1	4043500			89545	5806	62296	62398	99678;99679;99680;99681	99681					0.005497328607589225
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.7769775390625	2	537.776939	1073.53933	-0.11396	-6.1286E-05	0.11761	6.3251E-05	0.0036533	1.9647E-06	537.7769535500661	79.429	0.99925	79.21	78.873	79.873	-0.21923					76	23	4	0	0	0	0.028071	4	9509	9487;9497;9509;9522		143.11	33.492	1	4237200			89546	5806	62296	62398	99682;99683;99684;99685	99684					0.005497328607589225
WLDETLAQV	9	Unmodified	_WLDETLAQV_					0	0	0		nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.7766723632812	2	537.776939	1073.53933	-0.5405	-0.00029067	0.68571	0.00036876	0.14521	7.8089E-05	537.7772202327436	79.323	1.0039	79.173	78.862	79.866	-0.15051					76	23	4	0	0	0	0.028071	4	9469	9460;9469;9482;9494		143.11	31.053	1	4097800			89547	5806	62296	62398	99686;99687;99688;99689	99687					0.005497328607589225
WLDKRRYCV	9	Unmodified	_WLDKRRYCV_					0	0	0			REV__ENST00000566525.5_1_16:771546-771968:+|nuORF	REV__ENST00000566525.5_1_16:771546-771968:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	619.8689575195312	2	619.826775	1237.639	-0.49757	-0.00030841	-2.4458	-0.001516	-2.9434	-0.0018244	620.3269503069215	93.119	0.63447	93.119	92.794	93.429	0					23	14	2	0	0	0	0.024418	1	11778	11778		45.972	22.93	1	187110	+		89548	21372	62297	62399	99690	99690					0.029682719937227375
WLDKRRYCV	9	Unmodified	_WLDKRRYCV_					0	0	0			REV__ENST00000566525.5_1_16:771546-771968:+|nuORF	REV__ENST00000566525.5_1_16:771546-771968:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	619.826775	1237.639	-0.83967	-0.00052045	-2.5727	-0.0015946	-3.4124	-0.0021151	620.3270164872463	93.093	0.50597	93.101	92.887	93.393	0.0077286	0.05641	0.00018541	NaN	45.972	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166790	+		89549	21372	62297	62399							0.029682719937227375
WLDQVTVNHYH	11	Unmodified	_WLDQVTVNHYH_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	470.78289794921875	3	471.229959	1410.66805	0.99092	0.00046695	-2.816	-0.001327	-1.8251	-0.00086004	471.22857368790307	18.414	0.29658	18.257	18.099	18.396	-0.15637					12	5	3	0	0	0	0.024734	1	288	288		41.08	16.848	1	20841			89550	5212	62298	62400	99691	99691					-0.020859121762896393
WLDQVTVNHYH	11	Unmodified	_WLDQVTVNHYH_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	471.229959	1410.66805	0.35948	0.0001694	-2.7577	-0.0012995	-2.3982	-0.0011301	471.2285189520193	18.505	0.49545	18.302	18.064	18.559	-0.20371	0.015559	0.0016505	NaN	41.08	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49854			89551	5212	62298	62400							-0.020859121762896393
WLDSVVTQV	9	Unmodified	_WLDSVVTQV_					0	0	0		nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2	nc|ENSG00000087903|P48378-2|RFX2	nc|ENSG00000087903|P48378-2|RFX2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.7789306640625	2	523.779482	1045.54441	0.44087	0.00023092	-0.60722	-0.00031805	-0.16635	-8.7133E-05	523.7790393340343	78.526	1.485	78.334	77.604	79.089	-0.19211					88	35	3	0	0	0	0.14024	1	9691	9691		101.6	5.7855	1	1940700			89552	1857	62299	62401	99692	99692					0.023460367233838042
WLESPPQGRPL	11	Unmodified	_WLESPPQGRPL_					0	0	0		KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant;ENSG00000130487|ENST00000648057|KLHDC7B	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	KLHDC7B|p.F494Lfs*94|1|0.21|ENSG00000130487|chr22:50549638-50549639|-/G|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	640.3473510742188	2	640.343312	1278.67207	1.0477	0.00067089	2.2709	0.0014542	3.3186	0.0021251	640.344804406662	105.27	0.62677	105.27	105.06	105.69	0					28	15	3	0	0	0	1.0238	1	13528	13528		31.53	2.3598	1	332270			89553	4423	62300	62402	99693	99693					0.043881773174234695
WLEVVIFL	8	Unmodified	_WLEVVIFL_					0	0	0		ATP1A2|p.A318V|1|0.43|ENSG00000018625|chr1:160127756-160127756|C/T|missense_variant	ATP1A2|p.A318V|1|0.43|ENSG00000018625|chr1:160127756-160127756|C/T|missense_variant	ATP1A2|p.A318V|1|0.43|ENSG00000018625|chr1:160127756-160127756|C/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8038330078125	2	509.802229	1017.5899	0.52857	0.00026947	2.3866	0.0012167	2.9152	0.0014862	509.8032727891544	98.163	1.089	98.161	97.813	98.902	-0.0020752					57	25	4	0	0	0	1.0017	1	12431	12431		37.028	12.826	1	775880			89554	153	62301	62403	99694	99694					0.08181306976428004
WLGLHLPL	8	Unmodified	_WLGLHLPL_					0	0	0			REV__ENST00000262304.8_1_16:2160881-2161187:-|nuORF	REV__ENST00000262304.8_1_16:2160881-2161187:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	474.24578857421875	2	474.786913	947.559273	-0.47673	-0.00022635	-4.4571	-0.0021162	-4.9338	-0.0023425	474.78469731089297	46.232	0.73235	46.08	45.611	46.344	-0.15156					30	20	2	0	0	0	0.027866	1	4460	4460		43.626	24.266	1	286780	+		89555	29656	62302	62404	99695	99695					0.08339573382033905
WLGPRPLPS	9	Unmodified	_WLGPRPLPS_					0	0	0			REV__ENST00000325875.7_1_9:86595721-86614632:+|nuORF	REV__ENST00000325875.7_1_9:86595721-86614632:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	511.2635192871094	2	511.792727	1021.5709	-0.3286	-0.00016818	-1.8191	-0.00093098	-2.1477	-0.0010992	511.79158832843274	78.888	0.74274	78.907	78.651	79.394	0.018669					30	17	3	0	0	0	0.024535	1	9732	9732		25.45	0	1	281790	+		89556	30396	62303	62405	99696	99696					0.06097770405369829
WLGQGSPDL	9	Unmodified	_WLGQGSPDL_					0	0	0			REV__ENSG00000184436|ENST00000215742|THAP7	REV__ENSG00000184436|ENST00000215742|THAP7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.7435302734375	2	486.742899	971.471246	-0.48656	-0.00023683	0.42485	0.00020679	-0.061702	-3.0033E-05	486.74316626761896	41.883	2.0195	41.906	41.53	43.55	0.023014					138	56	5	0	0	0	0.067814	2	3736	3736;3748		122.18	6.717	1	13978000	+		89557	27670	62304	62406	99697;99698	99697					-0.01563091999230437
WLGTALKSL	9	Unmodified	_WLGTALKSL_					0	0	0		nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-2|EYA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	494.7945251464844	2	494.794935	987.575317	0.24752	0.00012247	-0.54981	-0.00027204	-0.30228	-0.00014957	494.7945761024775	59.473	1.1842	59.275	58.654	59.838	-0.19742					66	29	4	0	0	0	0.18915	1	6594	6594		90.777	5.6158	1	7735000			89558	6650	62305	62407	99699	99699					0.08103234828263339
WLHRRVKRLER	11	Unmodified	_WLHRRVKRLER_					0	0	0		ENSG00000204482|ENST00000438075|LST1;nc|ENSG00000204482|O00453-11|LST1	ENSG00000204482|ENST00000438075|LST1	ENSG00000204482|ENST00000438075|LST1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	517.7689819335938	3	516.983054	1547.92733	0.046536	2.4058E-05	3.9936	0.0020646	4.0401	0.0020887	516.9850691741474	52.651	1.465	52.504	51.881	53.346	-0.14723					114	38	4	0	0	0	0.024894	1	5584	5584		5.1424	4.8301	1	637300			89559	10348	62306	62408	99700	99700					0.17528503296171039
WLHSVLLP	8	Unmodified	_WLHSVLLP_					0	0	0		ENST00000464362.5_1_22:26875286-26875439:-|nuORF	ENST00000464362.5_1_22:26875286-26875439:-|nuORF	ENST00000464362.5_1_22:26875286-26875439:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.77630615234375	2	482.78437	963.554188	0.13538	6.5358E-05	-4.4796	-0.0021627	-4.3442	-0.0020973	482.7820850093017	49.644	1.0866	49.644	49.324	50.411	0					87	30	4	0	0	0	0.95417	1	5147	5147		44.531	0.41427	1	2756900			89560	14763	62307	62409	99701	99701					0.07095269519436442
WLIALIKP	8	Unmodified	_WLIALIKP_					0	0	0			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	478.3005676269531	2	477.312764	952.610974	-0.033649	-1.6061E-05	-2.5669	-0.0012252	-2.6005	-0.0012413	477.31160257601437	65.285	0.44296	65.322	65.081	65.523	0.037384					20	12	2	0	0	0	0.027866	1	7671	7671		29.842	5.6388	1	273850	+		89561	27380	62308	62410	99702	99702					0.13277317075949213
WLIIGFLASS	10	Unmodified	_WLIIGFLASS_					0	0	0			REV__ENST00000230173.10_3_6:142691597-142691657:+|nuORF	REV__ENST00000230173.10_3_6:142691597-142691657:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.831787109375	2	553.815867	1105.61718	-0.49002	-0.00027138	1.5736	0.00087146	1.0835	0.00060008	553.816788193061	88.612	0.33241	88.442	88.255	88.588	-0.17054					10	7	2	0	0	0	0.03519	1	10792	10792		38.806	9.6566	1	80130	+		89562	29406	62309	62411	99703	99703					0.06859790516796238
WLKGGVVL	8	Unmodified	_WLKGGVVL_					0	0	0		ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|521|48.7|0.0|22.22|+|ENST00000618112|BSG,None;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	ENST00000576925.3_1_19:572634-579657:+|nuORF	ENST00000576925.3_1_19:572634-579657:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.2737731933594	2	436.273638	870.532724	-0.3373	-0.00014715	0.99273	0.0004331	0.65543	0.00028595	436.2738667059697	60.563	1.0404	60.357	60.05	61.091	-0.20599					56	25	3	0	0	0	0.40853	2	6743	6735;6743		96.048	43.749	1	1730700			89563	366	62310	62412	99704;99705	99705					0.09227884490701399
WLKGGVVL	8	Unmodified	_WLKGGVVL_					0	0	0		ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|521|48.7|0.0|22.22|+|ENST00000618112|BSG,None;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	ENST00000576925.3_1_19:572634-579657:+|nuORF	ENST00000576925.3_1_19:572634-579657:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	436.27392578125	2	436.273638	870.532724	-0.72162	-0.00031482	1.3449	0.00058673	0.62325	0.00027191	436.2739714434025	60.399	0.63768	60.223	59.96	60.597	-0.1761					41	15	3	0	0	0	0.71717	2	6727	6727;6740		65.897	13.598	1	1576500			89564	366	62310	62412	99706;99707	99706					0.09227884490701399
WLKGGVVL	8	Unmodified	_WLKGGVVL_					0	0	0		ENST00000576925.3_1_19:572634-579657:+|nuORF;chr19:579656-581444|521|48.7|0.0|22.22|+|ENST00000618112|BSG,None;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	ENST00000576925.3_1_19:572634-579657:+|nuORF	ENST00000576925.3_1_19:572634-579657:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	436.2738037109375	2	436.273638	870.532724	-0.18709	-8.162E-05	0.5513	0.00024052	0.36421	0.0001589	436.27369702206755	60.611	0.79906	60.357	60.053	60.852	-0.25373					33	19	2	0	0	0	0.30995	2	6734	6734;6744		109.7	43.806	1	1640600			89565	366	62310	62412	99708;99709	99708					0.09227884490701399
WLKQLTVQ	8	Unmodified	_WLKQLTVQ_					0	0	0		ENST00000441598.1_1_2:60597053-60605688:-|nuORF	ENST00000441598.1_1_2:60597053-60605688:-|nuORF	ENST00000441598.1_1_2:60597053-60605688:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	507.30316162109375	2	508.300384	1014.58622	-0.32541	-0.00016541	-3.8454	-0.0019546	-4.1708	-0.00212	508.2984819604046	46.874	0.8524	46.721	46.309	47.161	-0.15301					52	22	5	0	0	0	0.027866	1	4666	4666		82.305	0	1	1194700			89566	14363	62311	62413	99710	99710					0.07950637202566213
WLKQNLNI	8	Unmodified	_WLKQNLNI_					0	0	0		ENST00000366922.2_1_1:220275838-220275901:+|nuORF	ENST00000366922.2_1_1:220275838-220275901:+|nuORF	ENST00000366922.2_1_1:220275838-220275901:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.3131103515625	2	514.798009	1027.58147	0.029214	1.504E-05	-0.72292	-0.00037216	-0.69371	-0.00035712	514.797309370197	88.661	0.46455	88.53	88.318	88.783	-0.13135					32	10	4	0	0	0	0.027866	1	10805	10805		42.474	6.8562	1	185670			89567	12829	62312	62414	99711	99711					0.06877753059779934
WLLAALLPL	9	Unmodified	_WLLAALLPL_					0	0	0			REV__ENST00000473720.5_1_2:130913661-130934206:-|nuORF	REV__ENST00000473720.5_1_2:130913661-130934206:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	505.3236389160156	2	505.325871	1008.63719	-0.75385	-0.00038094	-4.2575	-0.0021514	-5.0113	-0.0025324	505.324085613359	79.222	5.1637	79.05	78.611	83.775	-0.17226					329	123	6	0	0	0	0.80342	1	9825	9825		39.021	0	1	92209000	+		89568	33246	62313	62415	99712	99712					0.13321586247423056
WLLDALVGRIL	11	Unmodified	_WLLDALVGRIL_					0	0	0		ENSG00000139835|ENST00000375431|GRTP1;nc|ENSG00000139835|Q5TC63-3|GRTP1;nc|ENSG00000139835|Q5TC63-2|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	ENSG00000139835|ENST00000375431|GRTP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	634.892578125	2	634.889898	1267.76524	0.12287	7.8009E-05	3.5786	0.002272	3.7014	0.00235	634.8926987333672	104.55	1.1464	104.38	103.94	105.08	-0.16791					98	37	5	0	0	0	1.0292	1	13009	13009		30.318	1.1477	1	1729500			89569	5371	62314	62416	99713	99713					0.14207101770671215
WLLGVLKEV	9	Unmodified	_WLLGVLKEV_					0	0	0		ENST00000590335.1_1_19:45974274-45974658:+|nuORF	ENST00000590335.1_1_19:45974274-45974658:+|nuORF	ENST00000590335.1_1_19:45974274-45974658:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.822509765625	2	528.826235	1055.63792	-0.54852	-0.00029007	-3.702	-0.0019577	-4.2505	-0.0022478	528.8241085496753	54.926	1.3332	54.926	54.524	55.858	0					87	37	4	0	0	0	0.4752	1	6058	6058		60.972	0.85368	1	4446100			89570	17329	62315	62417	99714	99714					0.11232380896467475
WLLGVLKEV	9	Unmodified	_WLLGVLKEV_					0	0	0		ENST00000590335.1_1_19:45974274-45974658:+|nuORF	ENST00000590335.1_1_19:45974274-45974658:+|nuORF	ENST00000590335.1_1_19:45974274-45974658:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	528.8223876953125	2	528.826235	1055.63792	-0.46333	-0.00024502	-3.8371	-0.0020291	-4.3004	-0.0022742	528.8240994147764	55.097	1.2512	54.947	54.641	55.892	-0.15036					98	34	4	0	0	0	0.33245	1	6047	6047		71.296	10.324	1	4785600			89571	17329	62315	62417	99715	99715					0.11232380896467475
WLLILVCA	8	Unmodified	_WLLILVCA_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|308|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|308|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|308|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7773132324219	2	465.777699	929.540846	0.3767	0.00017546	-0.56998	-0.00026548	-0.19327	-9.0021E-05	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.0241	2	9790	9790;9857		33.493	0	1	1283800			89572	17881	62316	62418	99716;99717	99716					0.07325695415818245
WLLILVCA	8	Unmodified	_WLLILVCA_					0	0	0		L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|308|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|308|2|anti-sense	L1PA7_dup11190|chr14:30404509-30410867:-|2.4113130667421885|0.2252305955007206|3.42|418.0|308|2|anti-sense	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7772521972656	2	465.777699	929.540846	0.30012	0.00013979	-0.58012	-0.00027021	-0.28001	-0.00013042	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.9599	1	9833	9833		43.626	0	1	1281300			89573	17881	62316	62418	99718	99718					0.07325695415818245
WLLKRGSA	8	Unmodified	_WLLKRGSA_					0	0	0			REV__ENST00000566733.2_1_6:3908443-3908599:-|nuORF	REV__ENST00000566733.2_1_6:3908443-3908599:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7771911621094	2	465.779619	929.544686	0.41075	0.00019132	-4.2748	-0.0019911	-3.8641	-0.0017998	465.7776262825221	94.302	0.80025	94.18	93.798	94.598	-0.12215					43	18	3	0	0	0	1.0574	1	11641	11641		25.45	5.4534	1	599230	+		89574	35308	62317	62419	99719	99719					0.07709501233898663
WLLLATGVVS	10	Unmodified	_WLLLATGVVS_					0	0	0			REV__ENSG00000235568|ENST00000329021|NFAM1	REV__ENSG00000235568|ENST00000329021|NFAM1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.8175659179688	2	529.815867	1057.61718	0.46938	0.00024868	-0.088493	-4.6885E-05	0.38088	0.0002018	529.8163194576168	68.315	0.80464	68.085	67.755	68.559	-0.23047					38	19	3	0	0	0	0.60198	1	7894	7894		76.774	13.24	1	7904400	+		89575	28928	62318	62420	99720	99720					0.09067790516814966
WLLLAVSAL	9	Unmodified	_WLLLAVSAL_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	493.3070068359375	2	493.307678	984.600803	-0.12069	-5.9537E-05	-0.50125	-0.00024727	-0.62194	-0.00030681	493.3073562786403	100.93	1.3487	100.94	100.39	101.74	0.0090332					93	31	5	0	0	0	0.64155	1	12934	12934		50.025	0	1	8015200	+		89576	27729	62319	62421	99721	99721					0.10788709350697445
WLLRHEWWRWW	11	Unmodified	_WLLRHEWWRWW_					0	0	0			REV__ENST00000563368.5_1_15:75650962-75652298:-|nuORF	REV__ENST00000563368.5_1_15:75650962-75652298:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	439.7530517578125	4	439.227023	1752.87898	2.1675	0.00095201	-0.68281	-0.00029991	1.4847	0.0006521	439.2263178400741	23.42	0.2594	23.229	22.988	23.248	-0.19117					7	5	2	0	0	0	0.024904	1	892	892		0.37141	0.03091	1	37469	+		89577	35222	62320	62422	99722	99722					0.0326600965624948
WLLSALPM	8	Unmodified	_WLLSALPM_					0	0	0			REV__nc|ENSG00000215305|Q9H269-2|VPS16	REV__nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	465.77874755859375	2	465.759507	929.50446	0.21943	0.0001022	3.3865	0.0015773	3.606	0.0016795	465.7608056494771	80.533	1.3089	80.296	79.621	80.93	-0.23784					48	31	2	0	0	0	0.027866	1	9640	9640		86.935	49.775	1	555630	+		89578	28805	62321	62423	99723	99723					0.03688818519094639
WLLSMGRPV	9	Unmodified	_WLLSMGRPV_					0	0	0		ENST00000325147.13_1_11:204707-204863:-|nuORF	ENST00000325147.13_1_11:204707-204863:-|nuORF	ENST00000325147.13_1_11:204707-204863:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7960205078125	2	529.794412	1057.57427	0.87189	0.00046192	0.99304	0.00052611	1.8649	0.00098803	529.7948736336884	62.983	1.313	63.037	62.599	63.912	0.054104					84	34	3	0	0	0	0.17455	2	7254	7254;7266		94.006	6.2521	1	11704000			89579	12268	62322	62424	99724;99725	99724					0.04778697187725811
WLLTNSTT	8	Unmodified	_WLLTNSTT_					0	0	0		nc|ENSG00000173706|Q9ULI3-2|HEG1;ENSG00000173706|ENST00000311127|HEG1	nc|ENSG00000173706|Q9ULI3-2|HEG1	nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	468.2449035644531	2	468.245275	934.475997	0.40243	0.00018843	-1.4974	-0.00070113	-1.0949	-0.0005127	468.2444367275843	103.59	2.443	103.47	102.63	105.07	-0.12723					134	64	5	0	0	0	0.99042	1	12910	12910		38.806	1.647	1	4364500			89580	8403	62323	62425	99726	99726					0.006137921435083626
WLLVGLVM	8	Unmodified	_WLLVGLVM_					0	0	0			REV__nc|ENSG00000108846|O15438-5|ABCC3	REV__nc|ENSG00000108846|O15438-5|ABCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.7773742675781	2	465.777699	929.540846	0.30012	0.00013979	-0.58012	-0.00027021	-0.28001	-0.00013042	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	1.0241	1	9784	9784		33.493	8.989	1	1281300	+		89581	21766	62324	62426	99727	99727					0.07325695415829614
WLLVLLGP	8	Unmodified	_WLLVLLGP_					0	0	0			REV__nc|ENSG00000095970|Q9NZC2-2|TREM2	REV__nc|ENSG00000095970|Q9NZC2-2|TREM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	455.2608337402344	2	455.791664	909.568775	-0.13746	-6.2653E-05	1.5039	0.00068548	1.3665	0.00062283	455.79436120631016	38.747	0.56811	38.747	38.473	39.041	0					33	14	4	0	0	0	0.027866	1	3305	3305		16.705	6.5202	1	230310	+		89582	36511	62325	62427	99728	99728					0.1103734166756567
WLLVMGLV	8	Unmodified	_WLLVMGLV_					0	0	0		ENST00000311066.9_1_1:14113167-14113317:+|nuORF	ENST00000311066.9_1_1:14113167-14113317:+|nuORF	ENST00000311066.9_1_1:14113167-14113317:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.7776794433594	2	465.777699	929.540846	0.3767	0.00017546	-0.56998	-0.00026548	-0.19327	-9.0021E-05	465.7773084912668	81.017	3.7	80.779	79.874	83.574	-0.23783					250	87	4	0	0	0	1.0241	1	9706	9706		33.493	0	1	1283800			89583	12077	62326	62428	99729	99729					0.07325695415818245
WLLVMGLV	8	Unmodified	_WLLVMGLV_					0	0	0		ENST00000311066.9_1_1:14113167-14113317:+|nuORF	ENST00000311066.9_1_1:14113167-14113317:+|nuORF	ENST00000311066.9_1_1:14113167-14113317:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	465.777587890625	2	465.777699	929.540846	0.30012	0.00013979	-0.58012	-0.00027021	-0.28001	-0.00013042	465.7773211495714	81.022	4.1179	80.816	79.548	83.666	-0.20633					278	97	4	0	0	0	0.9599	2	9726	9726;9912		43.626	0	1	1281300			89584	12077	62326	62428	99730;99731	99730					0.07325695415818245
WLLVTVLM	8	Unmodified	_WLLVTVLM_					0	0	0		nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	487.7905578613281	2	487.790807	973.56706	0.37956	0.00018514	-0.77027	-0.00037573	-0.39071	-0.00019059	487.7903204357068	83.314	3.6093	83.102	82.182	85.791	-0.21159					269	84	4	0	0	0	1.0017	1	9991	9991		37.028	0	1	2659000			89585	18827	62327	62429	99732	99732					0.0792196458729677
WLMLLVVARKW	11	Unmodified	_WLMLLVVARKW_					0	0	0			REV__ENSG00000143315|ENST00000368090|PIGM	REV__ENSG00000143315|ENST00000368090|PIGM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	472.2825622558594	3	472.284571	1413.83188	0.72622	0.00034298	-2.5201	-0.0011902	-1.7939	-0.00084724	472.28332242305385	100.45	1.5422	100.45	100.01	101.55	0					42	36	2	0	0	0	1.0684	1	12849	12849		20.03	0.7678	1	243190	+		89586	24222	62328	62430	99733	99733					0.14152014060914553
WLMLLVVARKW	11	Unmodified	_WLMLLVVARKW_					0	0	0			REV__ENSG00000143315|ENST00000368090|PIGM	REV__ENSG00000143315|ENST00000368090|PIGM	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	472.284571	1413.83188	0.33486	0.00015815	-2.4352	-0.0011501	-2.1003	-0.00099194	472.2835584696348	100.36	0.67219	100.37	99.942	100.61	0.010117	-0.033625	2.737E-05	NaN	20.03	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292950	+		89587	24222	62328	62430							0.14152014060914553
WLMLLVVARKW	11	Unmodified	_WLMLLVVARKW_					0	0	0			REV__ENSG00000143315|ENST00000368090|PIGM	REV__ENSG00000143315|ENST00000368090|PIGM	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		3	472.284571	1413.83188	0.73946	0.00034924	-2.6549	-0.0012539	-1.9155	-0.00090465	472.28334357115943	100.41	0.48051	100.4	100.14	100.62	-0.0050812	-0.0028865	-0.00028401	NaN	20.03	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194410	+		89588	24222	62328	62430							0.14152014060914553
WLMLLVVARKW	11	Unmodified	_WLMLLVVARKW_					0	0	0			REV__ENSG00000143315|ENST00000368090|PIGM	REV__ENSG00000143315|ENST00000368090|PIGM	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	472.284571	1413.83188	-0.11646	-5.5001E-05	-1.8414	-0.00086968	-1.9579	-0.00092468	472.2837224628417	100.56	0.3969	100.38	100.14	100.54	-0.17088	-0.02097	0.0008686	NaN	20.03	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174100	+		89589	24222	62328	62430							0.14152014060914553
WLMPVIPAL	9	Unmodified	_WLMPVIPAL_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense;AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|1|1|sense;ENST00000563362.1_1_16:56473282-56473634:-|nuORF;ENST00000586321.1_1_17:76340207-76343521:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000521460.1_1_8:126375432-126379124:+|nuORF;ENST00000469840.1_1_2:201399891-201407862:+|nuORF;ENST00000409344.7_1_2:85582721-85584214:+|nuORF;ENST00000588816.1_1_19:46176107-46178652:+|nuORF;nc|nan|Q96CB5|C8orf44;ENST00000476245.5_1_3:125869637-125874346:-|nuORF;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.80615234375	2	520.304081	1038.59361	-0.15121	-7.8673E-05	1.1333	0.00058964	0.98206	0.00051097	520.3047267637381	105.21	0.27872	105.21	105.02	105.3	-0.0015945					19	8	3	0	0	0	0.024389	1	13436	13436		49.211	9.958	1	184380			89590	18754;11639;18396;16291;18134	62329	62431	99734	99734					0.0758565347862259
WLMPVIPAL	9	Unmodified	_WLMPVIPAL_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense;AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|1|1|sense;ENST00000563362.1_1_16:56473282-56473634:-|nuORF;ENST00000586321.1_1_17:76340207-76343521:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000521460.1_1_8:126375432-126379124:+|nuORF;ENST00000469840.1_1_2:201399891-201407862:+|nuORF;ENST00000409344.7_1_2:85582721-85584214:+|nuORF;ENST00000588816.1_1_19:46176107-46178652:+|nuORF;nc|nan|Q96CB5|C8orf44;ENST00000476245.5_1_3:125869637-125874346:-|nuORF;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	520.304081	1038.59361	-0.16712	-8.6952E-05	4.4021	0.0022904	4.2349	0.0022035	520.3075949705261	105.16	0.78873	105.16	104.53	105.32	0	0.13947	0.0021065	NaN	49.211	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194120			89591	18754;11639;18396;16291;18134	62329	62431							0.0758565347862259
WLMPVIPAL	9	Unmodified	_WLMPVIPAL_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense;AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|1|1|sense;ENST00000563362.1_1_16:56473282-56473634:-|nuORF;ENST00000586321.1_1_17:76340207-76343521:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000521460.1_1_8:126375432-126379124:+|nuORF;ENST00000469840.1_1_2:201399891-201407862:+|nuORF;ENST00000409344.7_1_2:85582721-85584214:+|nuORF;ENST00000588816.1_1_19:46176107-46178652:+|nuORF;nc|nan|Q96CB5|C8orf44;ENST00000476245.5_1_3:125869637-125874346:-|nuORF;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	520.304081	1038.59361	-0.11197	-5.826E-05	4.4221	0.0023008	4.3101	0.0022426	520.3073056388738	105.07	0.67817	105.08	104.58	105.26	0.00096893	0.058896	0.0021274	NaN	49.211	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247180			89592	18754;11639;18396;16291;18134	62329	62431							0.0758565347862259
WLMPVIPAL	9	Unmodified	_WLMPVIPAL_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense;AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|1|1|sense;ENST00000563362.1_1_16:56473282-56473634:-|nuORF;ENST00000586321.1_1_17:76340207-76343521:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000521460.1_1_8:126375432-126379124:+|nuORF;ENST00000469840.1_1_2:201399891-201407862:+|nuORF;ENST00000409344.7_1_2:85582721-85584214:+|nuORF;ENST00000588816.1_1_19:46176107-46178652:+|nuORF;nc|nan|Q96CB5|C8orf44;ENST00000476245.5_1_3:125869637-125874346:-|nuORF;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.304081	1038.59361	-0.079614	-4.1424E-05	2.8103	0.0014622	2.7307	0.0014208	520.3057846987415	105.01	0.3229	104.89	104.71	105.03	-0.12444	-0.12705	0.00045014	NaN	49.211	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80788			89593	18754;11639;18396;16291;18134	62329	62431							0.0758565347862259
WLMPVIPAL	9	Unmodified	_WLMPVIPAL_					0	0	0		nc|ENSG00000240682|Q9ULR0-2|ISY1;AluSz_dup37824|chr7:44800399-44800695:-|1.6879229882392028|0.0026438264880892|9.32|517.0|8|3|sense;AluSc8_dup3929|chr3:53237641-53237954:+|1.0187113660715497|0.4240188533349215|1.26|520.0|1|1|sense;ENST00000563362.1_1_16:56473282-56473634:-|nuORF;ENST00000586321.1_1_17:76340207-76343521:+|nuORF;ENST00000593704.1_1_19:35835757-35836128:+|nuORF;ENST00000521460.1_1_8:126375432-126379124:+|nuORF;ENST00000469840.1_1_2:201399891-201407862:+|nuORF;ENST00000409344.7_1_2:85582721-85584214:+|nuORF;ENST00000588816.1_1_19:46176107-46178652:+|nuORF;nc|nan|Q96CB5|C8orf44;ENST00000476245.5_1_3:125869637-125874346:-|nuORF;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1;ENST00000269919.10_1_19:18475054-18475243:+|nuORF;nc|ENSG00000154655|Q8NA19-2|L3MBTL4;ENST00000532485.5_1_11:76734550-76734952:+|nuORF;nc|ENSG00000102078|O95258-3|SLC25A14	nc|ENSG00000240682|Q9ULR0-2|ISY1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.304081	1038.59361	-0.43253	-0.00022505	3.9177	0.0020384	3.4851	0.0018133	520.3069664585018	104.96	0.91319	104.83	104.13	105.05	-0.13099	-0.18424	0.0016025	NaN	49.211	42	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90996			89594	18754;11639;18396;16291;18134	62329	62431							0.0758565347862259
WLPFCPEP	8	Unmodified	_WLPFCPEP_					0	0	0			REV__ENST00000378756.7_1_1:1469876-1469981:+|nuORF	REV__ENST00000378756.7_1_1:1469876-1469981:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.2745056152344	2	494.733489	987.452425	0.726	0.00035918	-3.9237	-0.0019412	-3.1977	-0.001582	494.7313843774767	72.151	0.61216	72.151	71.68	72.292	0					26	15	2	0	0	0	0.027866	1	8771	8771		28.254	12.612	1	172610	+		89595	31415	62330	62432	99735	99735					-0.041803448946552635
WLPGAPGGTA	10	Unmodified	_WLPGAPGGTA_					0	0	0		nc|ENSG00000162004|A2IDD5|CCDC78;ENSG00000162004|ENST00000345165|CCDC78;ENST00000466708.5_1_16:774659-776662:-|nuORF;nc|ENSG00000162004|A2IDD5-2|CCDC78;ENST00000463539.5_1_16:775076-776367:-|nuORF;ENST00000478979.5_1_16:774909-776367:-|nuORF;nc|ENSG00000162004|A2IDD5-4|CCDC78;ENST00000485091.5_1_16:774765-776367:-|nuORF;nc|ENSG00000162004|A2IDD5-6|CCDC78;nc|ENSG00000162004|A2IDD5-3|CCDC78;nc|ENSG00000162004|A2IDD5-5|CCDC78;ENST00000482878.5_1_16:774909-776367:-|nuORF	nc|ENSG00000162004|A2IDD5|CCDC78	nc|ENSG00000162004|A2IDD5|CCDC78	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	462.7681579589844	2	463.74016	925.465767	-0.99075	-0.00045945	-3.7523	-0.0017401	-4.743	-0.0021995	463.73845820362544	24.257	0.7065	24.21	23.826	24.533	-0.047148					19	15	2	0	0	0	0.03519	1	983	983		21.96	0	1	31637			89596	6909	62331	62433	99736	99736					5.2292089662842045E-05
WLPKVNALQTI	11	Unmodified	_WLPKVNALQTI_					0	0	0			REV__ENST00000530869.1_1_8:42614249-42623609:-|nuORF	REV__ENST00000530869.1_1_8:42614249-42623609:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8822021484375	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0592	1	11841	11841		22.58	4.3176	1	3421300	+		89597	34545	62332	62434	99737	99737					0.11490511390979918
WLPLAKAWLP	10	Unmodified	_WLPLAKAWLP_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.8560791015625	2	597.855327	1193.6961	-1.0361	-0.00061944	2.4651	0.0014738	1.429	0.00085433	597.8566218361385	92.599	3.5801	92.591	91.409	94.989	-0.0082855					298	85	5	0	0	0	1.1166	1	11739	11739		30.504	0.18592	1	4942300			89598	2518	62333	62435	99738	99738					0.1070006254171858
WLPLAKAWLP	10	Unmodified	_WLPLAKAWLP_					0	0	0		ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	ENST00000558725.5_1_15:67519241-67546969:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8562622070312	2	597.855327	1193.6961	-0.69485	-0.00041542	2.1801	0.0013034	1.4852	0.00088795	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	1.1166	1	11652	11652		30.504	1.3336	1	4386000			89599	2518	62333	62435	99739	99739					0.1070006254171858
WLPMGLLL	8	Unmodified	_WLPMGLLL_					0	0	0			REV__ENST00000394818.7_1_11:61919466-61919706:+|nuORF	REV__ENST00000394818.7_1_11:61919466-61919706:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	471.25140380859375	2	471.777699	941.540846	-0.45736	-0.00021577	-2.8423	-0.0013409	-3.2997	-0.0015567	471.77616761980045	27.548	1.3312	27.391	26.314	27.645	-0.15664					71	31	5	0	0	0	0.027866	1	1519	1519		24.504	0	1	199600	+		89600	31677	62334	62436	99740	99740					0.067736954158363
WLPVRLLKR	9	Unmodified	_WLPVRLLKR_					0	0	0			REV__ENST00000565162.2_1_22:19159276-19159567:+|nuORF	REV__ENST00000565162.2_1_22:19159276-19159567:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	590.8665161132812	2	590.887493	1179.76043	-1.6338	-0.00096537	1.6542	0.00097742	0.020394	1.2051E-05	590.8889601390603	102.24	0.22061	102.24	102.17	102.39	0					6	4	2	0	0	0	0.024506	1	13116	13116		30.504	0	1	46523	+		89601	35270	62335	62437	99741	99741					0.17774262418561193
WLQDQIQTV	9	Unmodified	_WLQDQIQTV_					0	0	0		ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	565.7960815429688	2	565.795663	1129.57677	-0.69899	-0.00039549	0.45684	0.00025848	-0.24215	-0.00013701	565.795810588353	68.962	1.2747	68.962	68.68	69.954	0					63	32	3	0	0	0	0.015752	1	8294	8294		158.07	31.832	1	2935500			89602	3337	62336	62438	99742	99742					0.017168241263561868
WLQDQIQTV	9	Unmodified	_WLQDQIQTV_					0	0	0		ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.7955932617188	2	565.795663	1129.57677	0.16442	9.3029E-05	-0.36137	-0.00020446	-0.19695	-0.00011143	565.7953912329275	69.323	1.2064	69.03	68.713	69.92	-0.29291					63	30	3	0	0	0	0.013065	1	8307	8307		171.53	45.289	1	2770300			89603	3337	62336	62438	99743	99743					0.017168241263561868
WLQDQIQTV	9	Unmodified	_WLQDQIQTV_					0	0	0		ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	565.7952270507812	2	565.795663	1129.57677	-0.94444	-0.00053436	0.67202	0.00038022	-0.27243	-0.00015414	565.7958832111568	69.032	1.1848	69.047	68.569	69.754	0.015129					65	30	3	0	0	0	0.014034	1	8222	8222		166.68	40.436	1	2545200			89604	3337	62336	62438	99744	99744					0.017168241263561868
WLQETLTDHWF	11	Unmodified	_WLQETLTDHWF_					0	0	0			REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	REV__ENST00000474207.2_1_19:2984211-2987247:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	492.7848205566406	3	492.569981	1474.68811	0.096103	4.7337E-05	3.1004	0.0015272	3.1965	0.0015745	492.90488987805753	46.926	0.31077	46.657	46.526	46.837	-0.26939					10	8	2	0	0	0	0.024779	1	4539	4539		34.087	18.08	1	115600	+		89605	33267	62337	62439	99745	99745					-0.03024161236362488
WLQNKKLS	8	Unmodified	_WLQNKKLS_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	REV__nc|ENSG00000140563|Q6DN12-2|MCTP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7765808105469	2	508.798009	1015.58147	-0.51291	-0.00026097	-0.16042	-8.1623E-05	-0.67333	-0.00034259	508.79764770173546	82.174	0.79489	82.174	81.869	82.664	0					30	18	2	0	0	0	0.027866	1	10318	10318		18.324	0	1	408910	+		89606	24030	62338	62440	99746	99746					0.07429753059807354
WLQPERCP	8	Unmodified	_WLQPERCP_					0	0	0			REV__ENST00000533093.5_1_8:144917265-144917559:-|nuORF	REV__ENST00000533093.5_1_8:144917265-144917559:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.8374633789062	2	514.752744	1027.49094	0.10953	5.6381E-05	1.6267	0.00083737	1.7363	0.00089375	514.7523668932728	68.817	0.1515	68.525	68.405	68.556	-0.29267					7	3	3	0	0	0	0.027866	1	8213	8213		27.882	10.517	1	48891	+		89607	34595	62339	62441	99747	99747					-0.021710392601335116
WLQPVRSVL	9	Unmodified	_WLQPVRSVL_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	549.32666015625	2	549.326934	1096.63931	-0.95342	-0.00052374	0.44459	0.00024423	-0.50883	-0.00027951	549.3270856570413	69.116	0.66608	68.854	68.586	69.252	-0.26166					41	15	4	0	0	0	0.35646	1	8009	8009		68.787	8.6686	1	1307100	+		89608	33491	62340	62442	99748	99748					0.0948601498523658
WLQQLRWRLWI	11	Unmodified	_WLQQLRWRLWI_					0	0	0			REV__ENST00000339686.7_1_19:36002448-36003323:-|nuORF	REV__ENST00000339686.7_1_19:36002448-36003323:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.24737548828125	4	400.233311	1596.90414	0.69794	0.00027934	-0.24086	-9.64E-05	0.45708	0.00018294	400.4841851888532	33.154	0.33791	33.154	33.018	33.356	0					10	8	2	0	0	0	0.024879	1	2342	2342		12.957	2.8536	1	50325	+		89609	30605	62341	62443	99749	99749					0.12956064458830951
WLQQVAASPW	10	Unmodified	_WLQQVAASPW_					0	0	0		ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	ENST00000262520.10_1_16:30996539-30997136:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	593.3058471679688	2	593.306198	1184.59784	-0.15806	-9.3775E-05	-0.11634	-6.9026E-05	-0.2744	-0.0001628	593.3060345541127	63.454	1.3539	63.196	62.835	64.188	-0.25824					92	34	4	0	0	0	0.77808	1	7170	7170		62.107	5.3864	1	6804400			89610	11505	62342	62444	99750	99750					0.012928342258874181
WLRLTLGF	8	Unmodified	_WLRLTLGF_					0	0	0			REV__ENSG00000214946|ENST00000437605|TBC1D26	REV__ENSG00000214946|ENST00000437605|TBC1D26	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	503.787109375	2	503.297645	1004.58074	-0.11708	-5.8924E-05	1.9045	0.00095851	1.7874	0.00089959	503.79951516228374	54.515	0.69434	54.364	54.051	54.745	-0.15036					43	19	3	0	0	0	0.027866	1	5956	5956		50.025	16.509	1	553690	+		89611	28793	62343	62445	99751	99751					0.07862958410760257
WLRNNNEL	8	Unmodified	_WLRNNNEL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;nc|ENSG00000130508|Q92626-2|PXDN	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	529.2984008789062	2	529.772522	1057.53049	-0.74806	-0.0003963	3.9837	0.0021104	3.2356	0.0017141	529.7745108968978	30.621	0.4581	30.63	30.538	30.996	0.0086708					15	10	2	0	0	0	0.027866	1	1978	1978		55.504	9.532	1	99376			89612	4424	62344	62446	99752	99752					0.004028040149478329
WLRTISVILF	10	Unmodified	_WLRTISVILF_					0	0	0		ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	ENST00000476196.5_1_20:57478538-57485881:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	624.3754272460938	2	624.379166	1246.74378	0.0948	5.9191E-05	1.0208	0.00063735	1.1156	0.00069654	624.3797573076713	100.78	0.46889	100.61	100.37	100.84	-0.17178					22	13	2	0	0	0	1.1259	1	12492	12492		24.203	1.6231	1	329940			89613	1850	62345	62447	99753	99753					0.13027716741930817
WLSAGQTEA	9	Unmodified	_WLSAGQTEA_					0	0	0		ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A;ENSG00000181652|ENST00000639579|ATG9B;nc|ENSG00000181652|Q674R7-2|ATG9B	ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.732666015625	2	481.732532	961.45051	0.1118	5.3858E-05	-0.19099	-9.2004E-05	-0.079185	-3.8146E-05	481.73241627706994	57.282	2.588	57.282	56.745	59.333	0					166	70	5	0	0	0	0.13494	3	6445	6433;6445;6457		102.77	15.019	1	18734000			89614	9058;146	62346	62448	99754;99755;99756	99755					-0.03175682378889633
WLSAGQTEA	9	Unmodified	_WLSAGQTEA_					0	0	0		ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A;ENSG00000181652|ENST00000639579|ATG9B;nc|ENSG00000181652|Q674R7-2|ATG9B	ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.7327575683594	2	481.732532	961.45051	0.42998	0.00020713	-0.62961	-0.00030331	-0.19964	-9.6171E-05	481.7322445153537	57.458	2.5706	57.283	56.7	59.27	-0.1749					147	70	5	0	0	0	0.13494	5	6433	6421;6433;6445;6470;6482		102.77	17.858	1	19184000			89615	9058;146	62346	62448	99757;99758;99759;99760;99761	99758					-0.03175682378889633
WLSAGQTEA	9	Unmodified	_WLSAGQTEA_					0	0	0		ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A;ENSG00000181652|ENST00000639579|ATG9B;nc|ENSG00000181652|Q674R7-2|ATG9B	ATG9A|p.W567Cfs*9|1|0.04|ENSG00000198925|chr2:219222786-219222792|TGGCTGC/-|frameshift_variant;ENSG00000181652|ENST00000639579|ATG9B	ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.7322692871094	2	481.732532	961.45051	-0.46005	-0.00022162	0.29897	0.00014402	-0.16108	-7.7599E-05	481.732670598193	57.163	2.8284	57.258	56.03	58.859	0.09531					182	77	5	0	0	0	0.13494	4	6334	6322;6334;6358;6384		102.77	8.5361	1	21019000			89616	9058;146	62346	62448	99762;99763;99764;99765	99763					-0.03175682378889633
WLSDLEITV	9	Unmodified	_WLSDLEITV_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.286865234375	2	538.28714	1074.55973	-1.6758	-0.00090206	2.2953	0.0012355	0.61948	0.00033346	538.287793578843	91.517	0.73015	91.368	91.055	91.785	-0.1487					41	16	4	0	0	0	0.18915	1	11230	11230		90.777	16.522	1	803020			89617	8817	62347	62449	99766	99766					0.025429035205434047
WLSDLEITV	9	Unmodified	_WLSDLEITV_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2868041992188	2	538.28714	1074.55973	-0.55182	-0.00029704	1.9694	0.0010601	1.4175	0.00076304	538.2868545740849	91.632	1.2257	91.493	90.784	92.01	-0.13942					66	28	4	0	0	0	0.33245	1	11230	11230		71.296	4.8664	1	956760			89618	8817	62347	62449	99767	99767					0.025429035205434047
WLSDPKVQV	9	Unmodified	_WLSDPKVQV_					0	0	0			REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.2974243164062	2	536.295299	1070.57605	0.24224	0.00012991	3.8857	0.0020839	4.128	0.0022138	536.2983486733813	74.566	2.1755	74.566	74.34	76.516	0					83	55	3	0	0	0	0.17822	1	9116	9116		93.195	8.2799	1	2790100	+		89619	32785	62348	62450	99768	99768					0.04358029477339187
WLSDPKVQV	9	Unmodified	_WLSDPKVQV_					0	0	0			REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.2955322265625	2	536.295299	1070.57605	-0.31556	-0.00016923	2.7878	0.0014951	2.4722	0.0013258	536.2956981749062	74.815	1.5662	74.556	74.368	75.934	-0.25887					63	40	4	0	0	0	0.20967	2	9130	9120;9130		87.754	10.345	1	3089200	+		89620	32785	62348	62450	99769;99770	99770					0.04358029477339187
WLSDPKVQV	9	Unmodified	_WLSDPKVQV_					0	0	0			REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	536.295299	1070.57605	-0.31556	-0.00016923	2.7878	0.0014951	2.4722	0.0013258	536.2956981749062	74.815	1.5662	74.556	74.368	75.934	-0.25887	0.036886	0.0017408	NaN	93.195	63	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3089200	+		89621	32785	62348	62450							0.04358029477339187
WLSGLHIPE	9	Unmodified	_WLSGLHIPE_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2823486328125	2	526.282192	1050.54983	1.3455	0.00070811	-1.881	-0.00098993	-0.53548	-0.00028181	526.281061256952	16.462	0.56144	16.308	16.195	16.756	-0.15376					28	15	3	0	0	0	0.98128	1	65	65		24.203	0	1	205630			89622	18641	62349	62451	99771	99771					0.026577603058285604
WLTQKQTL	8	Unmodified	_WLTQKQTL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.28912353515625	2	509.290017	1016.56548	-0.27446	-0.00013978	-0.37475	-0.00019086	-0.64921	-0.00033064	509.289966015571	47.82	0.87895	47.722	47.16	48.039	-0.097553					72	23	5	0	0	0	0.2677	1	4700	4700		125.81	43.574	1	2838400			89623	18787	62350	62452	99772	99772					0.05786046822890967
WLTQKQTL	8	Unmodified	_WLTQKQTL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.28912353515625	2	509.290017	1016.56548	-0.66878	-0.00034061	-0.062621	-3.1892E-05	-0.73141	-0.0003725	509.2900893805114	48.095	0.91666	47.819	47.305	48.222	-0.27598					82	24	5	0	0	0	0.15467	2	4733	4723;4733		148.04	54.037	1	2992600			89624	18787	62350	62452	99773;99774	99774					0.05786046822890967
WLTQKQTL	8	Unmodified	_WLTQKQTL_					0	0	0		nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	nc|ENSG00000266412|Q13772-4|NCOA4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.2890625	2	509.290017	1016.56548	0.099119	5.048E-05	-1.0289	-0.00052402	-0.9298	-0.00047354	509.2898035070237	47.943	1.1371	47.756	47.161	48.298	-0.18684					62	30	3	0	0	0	0.20995	1	4703	4703		138.83	53.466	1	2702200			89625	18787	62350	62452	99775	99775					0.05786046822890967
WLTRDFVP	8	Unmodified	_WLTRDFVP_					0	0	0			REV__ENST00000479366.1_1_X:153626623-153626884:+|nuORF	REV__ENST00000479366.1_1_X:153626623-153626884:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.2740478515625	2	517.276909	1032.53927	-0.92762	-0.00047984	-3.8553	-0.0019943	-4.783	-0.0024741	517.2745764839934	25.789	0.59786	25.789	25.486	26.083	0					30	13	3	0	0	0	0.75307	1	1257	1257		62.978	2.0065	1	523570	+		89626	33396	62351	62453	99776	99776					0.024297776514231373
WLVASSLKQS	10	Unmodified	_WLVASSLKQS_					0	0	0			REV__ENST00000525183.1_1_11:75852185-75852305:+|nuORF	REV__ENST00000525183.1_1_11:75852185-75852305:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	559.2645263671875	2	559.813856	1117.61316	-0.39202	-0.00021946	3.6458	0.002041	3.2538	0.0018215	559.8156607463382	79.6	1.0914	79.6	79.323	80.415	0					48	25	3	0	0	0	0.03519	1	9920	9920		45.972	0.020292	1	512890	+		89627	34409	62352	62454	99777	99777					0.05905701023084475
WLVDHVYAI	9	Unmodified	_WLVDHVYAI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000529672.1_1_11:111613245-111618714:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	558.2979736328125	2	558.297842	1114.58113	0.49518	0.00027646	-0.53943	-0.00030116	-0.044249	-2.4704E-05	558.2973656974129	74.758	1.1346	74.758	74.382	75.516	0					67	28	4	0	0	0	0.10076	3	9145	9145;9157;9169		110.34	43.908	1	3019100			89628	2693	62353	62455	99778;99779;99780	99778					0.028423333399359763
WLVDHVYAI	9	Unmodified	_WLVDHVYAI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000529672.1_1_11:111613245-111618714:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	558.2976684570312	2	558.297842	1114.58113	-0.21778	-0.00012158	0.15443	8.622E-05	-0.063343	-3.5364E-05	558.2977130745794	75.003	1.0945	74.744	74.368	75.463	-0.25887					76	27	4	0	0	0	0.062871	3	9157	9143;9157;9169		123.99	37.252	1	2860600			89629	2693	62353	62455	99781;99782;99783	99782					0.028423333399359763
WLVDHVYAI	9	Unmodified	_WLVDHVYAI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000529672.1_1_11:111613245-111618714:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	558.2974243164062	2	558.297842	1114.58113	-0.13027	-7.2728E-05	-0.23215	-0.00012961	-0.36242	-0.00020234	558.2975986741732	74.826	0.98834	74.836	74.481	75.47	0.010376					45	24	2	0	0	0	0.10076	2	9079	9079;9093		110.34	28.097	1	3117200			89630	2693	62353	62455	99784;99785	99784					0.028423333399359763
WLVDHVYAI	9	Unmodified	_WLVDHVYAI_					0	0	0		PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000529672.1_1_11:111613245-111618714:-|nuORF	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	PPP2R1A|p.A480Cfs*31|1|0.15|ENSG00000105568|chr19:52221051-52221052|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2978515625	2	558.297842	1114.58113	0.24161	0.00013489	-0.55312	-0.0003088	-0.3115	-0.00017391	558.297513919643	74.8	0.8373	74.618	74.309	75.146	-0.18279					37	19	3	0	0	0	0.22754	1	8826	8826		85.359	23.252	1	605390			89631	2693	62353	62455	99786	99786					0.028423333399359763
WLVETLSR	8	Unmodified	_WLVETLSR_					0	0	0			REV__ENST00000557709.1_1_14:83484701-83484893:-|nuORF	REV__ENST00000557709.1_1_14:83484701-83484893:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.290771484375	2	502.282192	1002.54983	0.79246	0.00039804	-1.9804	-0.00099472	-1.1879	-0.00059669	502.2813788880909	84.955	0.41362	84.955	84.792	85.206	0					16	9	2	0	0	0	0.027866	1	10634	10634		71.296	39.341	1	161620	+		89632	35079	62354	62456	99787	99787					0.04865760305870026
WLVLLISM	8	Unmodified	_WLVLLISM_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENST00000403332.2_1_6:129478670-129479855:-|nuORF	ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.79052734375	2	487.790807	973.56706	-0.4369	-0.00021311	0.010937	5.335E-06	-0.42596	-0.00020778	487.79075055491927	82.736	3.0099	82.736	82.072	85.082	0					235	70	4	0	0	0	1.0017	1	10394	10394		37.028	3.5355	1	2003200			89633	2855	62355	62457	99788	99788					0.07921964587319508
WLVLLISM	8	Unmodified	_WLVLLISM_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENST00000403332.2_1_6:129478670-129479855:-|nuORF	ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	487.791015625	2	487.790807	973.56706	0.56547	0.00027583	-0.97572	-0.00047595	-0.41025	-0.00020012	487.7902288308898	83.112	2.9235	82.943	82.342	85.266	-0.16915					252	68	4	0	0	0	1.0572	2	10107	10107;10119		28.254	3.7503	1	2408700			89634	2855	62355	62457	99789;99790	99789					0.07921964587319508
WLVLLISM	8	Unmodified	_WLVLLISM_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENST00000403332.2_1_6:129478670-129479855:-|nuORF	ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	487.79083251953125	2	487.790807	973.56706	0.33726	0.00016451	-0.79423	-0.00038742	-0.45697	-0.0002229	487.79032911986883	83.042	3.3107	82.903	82.348	85.659	-0.13861					261	77	4	0	0	0	1.0017	2	10021	9961;10021		37.028	7.1869	1	1999500			89635	2855	62355	62457	99791;99792	99792					0.07921964587319508
WLVRLRPL	8	Unmodified	_WLVRLRPL_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	526.2691040039062	2	526.840011	1051.66547	-0.7839	-0.00041299	-0.34756	-0.00018311	-1.1315	-0.0005961	526.8396017639136	66.173	0.51233	65.959	65.794	66.306	-0.21327					17	12	2	0	0	0	0.027866	1	7626	7626		26.796	4.8362	1	120210	+		89636	25300	62356	62458	99793	99793					0.14170328947352573
WLVRLRPL	8	Unmodified	_WLVRLRPL_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.840011	1051.66547	-0.11152	-5.8755E-05	-1.2815	-0.00067512	-1.393	-0.00073388	526.8392352235606	65.962	0.57912	65.962	65.605	66.184	0	-0.024092	-0.00010708	NaN	26.796	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950900	+		89637	25300	62356	62458							0.14170328947352573
WLVRLRPL	8	Unmodified	_WLVRLRPL_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.840011	1051.66547	-0.40934	-0.00021566	-0.98877	-0.00052093	-1.3981	-0.00073658	526.8393390554189	66.34	0.54053	66.058	65.672	66.213	-0.28148	0.072255	0.00020131	NaN	26.796	36	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789980	+		89638	25300	62356	62458							0.14170328947352573
WLVRLRPL	8	Unmodified	_WLVRLRPL_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.840011	1051.66547	0.042892	2.2597E-05	-1.2921	-0.00068072	-1.2492	-0.00065812	526.8391834651932	65.984	0.57319	66.014	65.624	66.197	0.030106	0.027626	-0.00011828	NaN	26.796	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	918990	+		89639	25300	62356	62458							0.14170328947352573
WLVRLRPL	8	Unmodified	_WLVRLRPL_					0	0	0			REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	REV__ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	526.840011	1051.66547	-0.3757	-0.00019794	-1.5837	-0.00083433	-1.9594	-0.0010323	526.8390414852084	66.17	0.39517	65.921	65.728	66.123	-0.24902	-0.065503	-0.00042551	NaN	26.796	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92806	+		89640	25300	62356	62458							0.14170328947352573
WLYKRKLYLKK	11	Unmodified	_WLYKRKLYLKK_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.6577758789062	3	513.657173	1537.94969	0.47228	0.00024259	-0.55331	-0.00028421	-0.08103	-4.1622E-05	513.6568834415483	105.7	0.22512	105.54	105.49	105.71	-0.16132					11	8	2	0	0	0	1.1135	1	13154	13154		6.3209	0.31984	1	93638	+		89641	35662	62357	62459	99794	99794					0.20223289921204923
WLYKRKLYLKK	11	Unmodified	_WLYKRKLYLKK_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	513.657173	1537.94969	-0.87522	-0.00044956	1.0845	0.00055707	0.2093	0.00010751	513.6574871402285	105.62	0.36276	105.49	105.26	105.63	-0.13099	-0.022178	0.00088592	NaN	6.3209	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119190	+		89642	35662	62357	62459							0.20223289921204923
WLYKRKLYLKK	11	Unmodified	_WLYKRKLYLKK_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	513.657173	1537.94969	0.47228	0.00024259	-0.55331	-0.00028421	-0.08103	-4.1622E-05	513.6568834415483	105.7	0.22512	105.54	105.49	105.71	-0.16132	0.022178	-0.0016379	NaN	6.3209	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93638	+		89643	35662	62357	62459							0.20223289921204923
WMAPESIFNSL	11	Unmodified	_WMAPESIFNSL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	647.8128051757812	2	647.810456	1293.60636	-0.23617	-0.00015299	0.81623	0.00052876	0.58006	0.00037577	647.810981527909	62.734	1.7846	62.55	62.185	63.97	-0.18386					103	50	3	0	0	0	0.849	1	7090	7090		54.722	6.7628	1	10315000			89644	3322	62358	62460	99795	99795					-0.028699799197738685
WMPIIWLF	8	Unmodified	_WMPIIWLF_					0	0	0			REV__nc|ENSG00000138347|Q86TC9-2|MYPN	REV__nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.7822875976562	2	553.298799	1104.58304	-0.19886	-0.00011003	-1.5201	-0.00084105	-1.7189	-0.00095108	553.7998358355642	83.198	0.25922	83.059	82.952	83.212	-0.1386					7	5	2	0	0	0	0.027866	1	10015	10015		33.493	1.5381	1	38770	+		89645	36708	62359	62461	99796	99796					0.034936708241957604
WMRLFRQIAVL	11	Unmodified	_WMRLFRQIAVL_					0	0	0			REV__ENST00000489204.1_1_10:134155720-134158159:+|nuORF	REV__ENST00000489204.1_1_10:134155720-134158159:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.2851257324219	3	478.279708	1431.8173	4.6789	0.0022378	4.4617	0.002134	9.1406	0.0043718	478.28185163439673	18.035	0.30546	18.095	17.952	18.258	0.06036					10	6	2	0	0	0	1.1135	1	216	216		6.3209	0.31984	1	17140	+		89646	24637	62360	62462	99797	99797					0.11865941912765265
WMSAPLQHA	9	Oxidation (M)	_WM(Oxidation (M))SAPLQHA_		WM(1)SAPLQHA		WM(49)SAPLQHA	0	0	1			REV__ENST00000251166.8_1_16:4404717-4405131:-|nuORF	REV__ENST00000251166.8_1_16:4404717-4405131:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	528.7481079101562	2	528.750201	1055.48585	0.46157	0.00024405	-4.0387	-0.0021354	-3.5771	-0.0018914	528.7478381280127	84.986	3.1781	84.827	84.02	87.198	-0.15869					155	74	4	0	0	0	0.6504	1	10326	10326		49.442	7.0454	1	2044000	+		89647	29497	62361	62463	99798	99798		859			-0.03967343122758393
WMSWDNRCYE	10	Unmodified	_WMSWDNRCYE_					0	0	0			REV__ENSG00000178690|ENST00000648945|DYNAP	REV__ENSG00000178690|ENST00000648945|DYNAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	463.31317138671875	3	463.849874	1388.52779	0.65954	0.00030593	3.862	0.0017914	4.5215	0.0020973	464.1857918386509	19.256	0.29757	19.056	18.908	19.206	-0.2001					8	5	2	0	0	0	0.03519	1	401	401		20.03	0	1	15542	+		89648	27197	62362	62464	99799	99799					-0.15093155496492727
WNDQNPEL	8	Unmodified	_WNDQNPEL_					0	0	0			REV__ENSG00000183317|ENST00000373048|EPHA10	REV__ENSG00000183317|ENST00000373048|EPHA10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.226806640625	2	508.227613	1014.44067	0.3812	0.00019374	1.3942	0.00070855	1.7754	0.00090229	508.22743412680103	106.09	3.2101	105.93	104.09	107.3	-0.16132					198	123	3	0	0	0	0.97794	1	13278	13278		40.778	7.9657	1	202260	+		89649	27565	62363	62465	99800	99800					-0.06596870384282738
WNDTECHLT	9	Unmodified	_WNDTECHLT_					0	0	0		ENSG00000184374|ENST00000332843|COLEC10	ENSG00000184374|ENST00000332843|COLEC10	ENSG00000184374|ENST00000332843|COLEC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	558.7387084960938	2	559.732206	1117.44986	-0.49397	-0.00027649	3.1598	0.0017687	2.6659	0.0014922	559.7335967342458	60.885	0.37822	60.885	60.692	61.07	0					15	9	2	0	0	0	0.024021	1	7021	7021		58.782	5.4305	1	289580			89650	9331	62364	62466	99801	99801					-0.10416845090253446
WNDTECHLT	9	Unmodified	_WNDTECHLT_					0	0	0		ENSG00000184374|ENST00000332843|COLEC10	ENSG00000184374|ENST00000332843|COLEC10	ENSG00000184374|ENST00000332843|COLEC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	558.73828125	2	559.732206	1117.44986	-0.59506	-0.00033308	4.2501	0.0023789	3.655	0.0020458	560.2369667152727	61.154	0.52285	60.941	60.643	61.166	-0.21339					25	13	3	0	0	0	0.023837	1	7026	7026		64.207	21.811	1	199470			89651	9331	62364	62466	99802	99802					-0.10416845090253446
WNETVSNL	8	Unmodified	_WNETVSNL_					0	0	0		ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3;ENSG00000118160|ENST00000236877|SLC8A2;nc|ENSG00000183023|P32418-2|SLC8A1	ENSG00000100678|ENST00000356921|SLC8A3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2459716796875	2	481.732532	961.45051	1.2919	0.00062237	-1.6797	-0.00080915	-0.38774	-0.00018678	481.7320693639993	59.805	1.2123	59.805	59.333	60.546	0					69	32	3	0	0	0	0.027866	1	6962	6962		53.351	21.397	1	1234400			89652	2238;18576;3669	62365	62467	99803	99803					-0.03175682378889633
WNFLLWNV	8	Unmodified	_WNFLLWNV_					0	0	0			REV__CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant;REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	545.8109130859375	2	546.287277	1090.56	-0.35578	-0.00019436	-4.2179	-0.0023042	-4.5737	-0.0024986	546.2847272280478	91.564	0.51611	91.574	91.36	91.876	0.010292					27	11	3	0	0	0	0.027866	1	11513	11513		79.939	11.152	1	247870	+		89653	26560;19308	62366	62468	99804	99804					0.01834368031086342
WNKKGKKV	8	Unmodified	_WNKKGKKV_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;PTPRD|p.N738Ifs*7|1|0.44|ENSG00000153707|chr9:8499758-8499758|G/-|frameshift_variant;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-6|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3085632324219	2	494.308544	986.602535	0.035276	1.7437E-05	-0.6976	-0.00034483	-0.66232	-0.00032739	494.30803427518555	79.145	1.0032	79.145	78.825	79.828	0					46	23	4	0	0	0	0.96719	1	9815	9815		42.474	8.9589	1	810840			89654	6354;2675	62367	62469	99805	99805					0.10869763159325885
WNLCEILFI	9	Unmodified	_WNLCEILFI_					0	0	0		ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85	ENST00000583548.1_1_17:73204633-73212422:+|nuORF	ENST00000583548.1_1_17:73204633-73212422:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8048095703125	2	575.801903	1149.58925	0.92572	0.00053303	0.79992	0.00046059	1.7256	0.00099363	575.8022313057114	70.948	0.93607	70.655	70.411	71.347	-0.29292					45	22	3	0	0	0	0.64897	1	8545	8545		49.536	8.7579	1	1879400			89655	4106	62368	62470	99806	99806					0.020441442650735553
WNPKQQEI	8	Unmodified	_WNPKQQEI_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	521.7679443359375	2	521.769448	1041.52434	-0.24939	-0.00013012	-0.53303	-0.00027812	-0.78241	-0.00040824	521.7690494448261	55.669	1.0713	55.513	54.923	55.995	-0.15601					66	29	4	0	0	0	0.94517	1	6165	6165		45.952	5.1738	1	8170400	+		89656	27746	62369	62471	99807	99807					0.005242857834218739
WNQLVVPVLF	10	Unmodified	_WNQLVVPVLF_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	405.56829833984375	3	405.569253	1213.68593	1.373	0.00055684	-4.4203	-0.0017928	-3.0474	-0.0012359	405.5674207788586	42.135	1.0647	42.135	41.758	42.823	0					96	30	5	0	0	0	1.0236	2	3845	3845;3856		42.864	11.23	1	5569100			89657	5843	62370	62472	99808;99809	99808					0.08763454816494232
WNQNGKSP	8	Unmodified	_WNQNGKSP_					0	0	0		ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	465.32891845703125	2	465.725041	929.435529	3.3016	0.0015376	1.0701	0.00049838	4.3717	0.002036	465.7252764173472	18.251	0.49846	18.009	17.776	18.274	-0.24256					13	9	2	0	0	0	0.027866	1	245	245		29.15	0	1	39084			89658	10057	62371	62473	99810	99810					-0.0320112945623805
WNQQITKRKKK	11	Unmodified	_WNQQITKRKKK_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	486.96142578125	3	486.628165	1456.86267	0.037253	1.8128E-05	-2.0294	-0.00098755	-1.9921	-0.00096943	486.627050015951	105.28	0.42451	105.15	104.85	105.28	-0.12444					30	11	4	0	0	0	1.0739	2	13112	13098;13112		18.531	3.9821	1	203490			89659	1804	62372	62474	99811;99812	99812					0.15250883699468432
WNQVAGFM	8	Unmodified	_WNQVAGFM_					0	0	0		ENST00000511466.5_1_4:145916712-146017251:-|nuORF	ENST00000511466.5_1_4:145916712-146017251:-|nuORF	ENST00000511466.5_1_4:145916712-146017251:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	475.7799072265625	2	476.720913	951.427273	0.50133	0.000239	2.0228	0.00096431	2.5241	0.0012033	476.7216904961198	33.912	0.35047	33.912	33.7	34.05	0					10	8	2	0	0	0	0.027866	1	2499	2499		28.254	11.549	1	59563			89660	15837	62373	62475	99813	99813					-0.05038399697218665
WNVAMVKIK	9	Unmodified	_WNVAMVKIK_					0	0	0		ENST00000478379.5_2_17:61941583-61941730:+|nuORF	ENST00000478379.5_2_17:61941583-61941730:+|nuORF	ENST00000478379.5_2_17:61941583-61941730:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.8157958984375	2	544.817887	1087.62122	-0.29086	-0.00015847	-4.1281	-0.0022491	-4.419	-0.0024075	544.8158123510086	17.868	0.4921	17.726	17.552	18.044	-0.14278					19	9	3	0	0	0	0.92825	1	220	220		30.504	0.6621	1	288190			89661	15145	62374	62476	99814	99814					0.08091556738850159
WPALRGAIV	9	Unmodified	_WPALRGAIV_					0	0	0			REV__ENSG00000177191|ENST00000691102|B3GNT8	REV__ENSG00000177191|ENST00000691102|B3GNT8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7957458496094	2	491.795269	981.575986	-0.20623	-0.00010142	1.4377	0.00070706	1.2315	0.00060564	491.7957748473887	47.704	1.5509	47.704	46.623	48.174	0					133	44	4	0	0	0	0.90698	1	4871	4871		31.955	3.7006	1	6134900	+		89662	27090	62375	62477	99815	99815					0.08446074267988024
WPCHVSSL	8	Unmodified	_WPCHVSSL_					0	0	0			REV__ENST00000400337.6_1_21:46933073-46933574:+|nuORF	REV__ENST00000400337.6_1_21:46933073-46933574:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.26690673828125	2	464.720913	927.427273	0.099775	4.6368E-05	1.0651	0.00049499	1.1649	0.00054135	464.72126148560693	42.849	0.68879	42.71	42.448	43.137	-0.13929					42	18	3	0	0	0	0.027866	1	3947	3947		62.978	25.95	1	1536600	+		89663	31849	62376	62478	99816	99816					-0.03934399697232038
WPCSRMGSS	9	Unmodified	_WPCSRMGSS_					0	0	0			REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7142028808594	2	505.712762	1009.41097	-0.59654	-0.00030168	3.3667	0.0017026	2.7702	0.0014009	505.71448929860196	29.203	1.6572	29.03	28.003	29.66	-0.17258					107	38	5	0	0	0	0.56934	1	1750	1750		54.776	10.66	1	1697700	+		89664	37672	62377	62479	99817	99817					-0.09335848925616119
WPCSRMGSS	9	Unmodified	_WPCSRMGSS_					0	0	0			REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.7142028808594	2	505.712762	1009.41097	-0.33266	-0.00016823	3.1457	0.0015908	2.813	0.0014226	505.71433724954466	31.485	3.9418	31.3	29.477	33.419	-0.18503					250	95	4	0	0	0	0.6504	1	2119	2119		49.442	13.823	1	1825100	+		89665	37672	62377	62479	99818	99818					-0.09335848925616119
WPCSRMGSS	9	Unmodified	_WPCSRMGSS_					0	0	0			REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	REV__SZT2|p.V726Cfs*41|1|0.26|ENSG00000198198|chr1:43423231-43423231|C/-|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	505.712762	1009.41097	-0.65695	-0.00033223	0.11483	5.807E-05	-0.54212	-0.00027416	505.71315711602205	29.021	0.21529	29.024	28.839	29.055	0.0031376	0.00069452	-0.0031148	NaN	54.776	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25139	+		89666	37672	62377	62479							-0.09335848925616119
WPDLLPKL	8	Unmodified	_WPDLLPKL_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.2883605957031	2	491.292028	980.569503	0.040001	1.9652E-05	-4.1301	-0.0020291	-4.0901	-0.0020095	491.289864404351	74.051	1.1911	73.78	73.499	74.69	-0.27126					57	28	3	0	0	0	0.91239	1	9008	9008		50.025	2.1089	1	5858600			89667	18095	62378	62480	99819	99819					0.07844136316600725
WPERRKSIAVR	11	Unmodified	_WPERRKSIAVR_					0	0	0		ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	466.6062927246094	3	466.608993	1396.80515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.16	1	100.17	99.666	100.67	0.010117								0	0	0	1.2296	1	12777	12777		29.551	6.9892	1				89668	13143	62379	62481	99820	99820					0.12262041493909237
WPERRKSIAVR	11	Unmodified	_WPERRKSIAVR_					0	0	0		ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	466.6074523925781	3	466.608993	1396.80515	0.67563	0.00031525	-2.6518	-0.0012373	-1.9761	-0.00092208	466.9421267288949	100.12	2.6075	99.984	99.25	101.86	-0.13364					137	67	3	0	0	0	1.0621	1	12392	12392		21.78	1.4654	1	1258700			89669	13143	62379	62481	99821	99821					0.12262041493909237
WPFVCWWRYWW	11	Unmodified	_WPFVCWWRYWW_					0	0	0		ENST00000410111.7_1_2:86406577-86422494:-|nuORF	ENST00000410111.7_1_2:86406577-86422494:-|nuORF	ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.78485107421875	4	429.449863	1713.77035	0.092125	3.9563E-05	2.9139	0.0012514	3.0061	0.001291	429.7021078591915	25.873	0.15342	25.703	25.581	25.735	-0.17078					5	3	2	0	0	0	0.024901	1	1257	1257		3.6191	2.0961	1	56461			89670	13805	62380	62482	99822	99822					-0.057989176383898666
WPGLSVAKL	9	Unmodified	_WPGLSVAKL_					0	0	0			REV__ENSG00000168758|ENST00000305476|SEMA4C	REV__ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.7886962890625	2	485.789653	969.564752	-0.85849	-0.00041704	-4.1129	-0.001998	-4.9714	-0.002415	485.7876208377282	46.941	1.0988	47	46.516	47.615	0.059097					95	30	5	0	0	0	0.13494	1	4619	4619		102.77	4.144	1	7541800	+		89671	26288	62381	62483	99823	99823					0.07875252173846548
WPIHLRYI	8	Unmodified	_WPIHLRYI_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3178100585938	2	549.316369	1096.61818	0.027734	1.5235E-05	2.4995	0.001373	2.5273	0.0013883	549.3177491805235	99.653	0.69202	99.653	99.179	99.871	0					46	15	4	0	0	0	1.0574	1	12731	12731		18.324	0	1	438170	+		89672	28266	62382	62484	99824	99824					0.07374049676354844
WPIHLRYI	8	Unmodified	_WPIHLRYI_					0	0	0			REV__nc|ENSG00000197121|Q75T13-2|PGAP1	REV__nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.318603515625	2	549.316369	1096.61818	-0.43545	-0.0002392	3.2153	0.0017662	2.7798	0.001527	549.3180052231875	99.575	0.68658	99.585	99.223	99.91	0.010239					46	15	4	0	0	0	1.0574	1	12701	12701		26.796	2.5934	1	445600	+		89673	28266	62382	62484	99825	99825					0.07374049676354844
WPIMVTRKL	9	Unmodified	_WPIMVTRKL_					0	0	0		ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2866821289062	2	572.338987	1142.66342	-0.36344	-0.00020801	-4.1114	-0.0023531	-4.4748	-0.0025611	572.3365229369346	52.475	0.43421	52.356	52.165	52.599	-0.11875					22	10	3	0	0	0	0.024381	1	5470	5470		55.504	0	1	363920			89674	5252	62383	62485	99826	99826					0.09779532147240388
WPKDVGIVAL	10	Unmodified	_WPKDVGIVAL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.3214721679688	2	549.321317	1096.62808	-0.67304	-0.00036971	0.29722	0.00016327	-0.37582	-0.00020645	549.3213937063153	73.418	0.66433	73.418	72.952	73.617	0					48	17	4	0	0	0	0.54901	3	8967	8958;8967;8981		82.75	17.285	1	4103500			89675	3253	62384	62486	99827;99828;99829	99828					0.0836319289110179
WPKDVGIVAL	10	Unmodified	_WPKDVGIVAL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.3214721679688	2	549.321317	1096.62808	-0.73031	-0.00040118	0.49876	0.00027398	-0.23155	-0.0001272	549.3214684232682	73.737	0.55592	73.466	73.09	73.646	-0.27126					47	14	5	0	0	0	0.40067	2	8979	8979;8992		98.629	33.164	1	3801400			89676	3253	62384	62486	99830;99831	99830					0.0836319289110179
WPKDVGIVAL	10	Unmodified	_WPKDVGIVAL_					0	0	0		ENSG00000112972|ENST00000325110|HMGCS1;ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF	ENSG00000112972|ENST00000325110|HMGCS1	ENSG00000112972|ENST00000325110|HMGCS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.3211059570312	2	549.321317	1096.62808	-0.79088	-0.00043445	0.58305	0.00032028	-0.20783	-0.00011416	549.3215224029415	73.413	0.65405	73.422	72.986	73.64	0.0096512					50	16	5	0	0	0	0.28861	3	8891	8880;8891;8903		110.12	24.959	1	3672500			89677	3253	62384	62486	99832;99833;99834	99833					0.0836319289110179
WPLGAWSY	8	Unmodified	_WPLGAWSY_					0	0	0			REV__ENST00000575427.1_1_17:7306368-7306464:-|nuORF	REV__ENST00000575427.1_1_17:7306368-7306464:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2369689941406	2	490.237253	978.459953	0.35268	0.0001729	-3.0395	-0.0014901	-2.6868	-0.0013172	490.23557364228276	99.219	0.7554	99.219	98.823	99.578	0					49	16	4	0	0	0	0.95417	1	12689	12689		44.531	5.7249	1	405360	+		89678	35460	62385	62487	99835	99835					-0.030138693027311092
WPLGAWSY	8	Unmodified	_WPLGAWSY_					0	0	0			REV__ENST00000575427.1_1_17:7306368-7306464:-|nuORF	REV__ENST00000575427.1_1_17:7306368-7306464:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.237253	978.459953	0.2427	0.00011898	-8.7266	-0.0042781	-8.4839	-0.0041591	490.2321606280184	99.465	0.53552	99.297	99.161	99.697	-0.16862	0.038839	-0.0054387	NaN	44.531	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60776	+		89679	35460	62385	62487							-0.030138693027311092
WPLLAPGQPL	10	Unmodified	_WPLLAPGQPL_					0	0	0			REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	REV__ENST00000357461.6_1_14:67939156-67939645:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.7765502929688	2	546.316035	1090.61752	-0.59033	-0.0003225	-3.2532	-0.0017773	-3.8435	-0.0020998	546.3141364093144	51.949	0.8387	51.949	51.633	52.472	0					33	20	2	0	0	0	0.03519	1	5614	5614		60.972	0	1	1402100	+		89680	30832	62386	62488	99836	99836					0.07583210236657578
WPLLARGLA	9	Unmodified	_WPLLARGLA_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.80389404296875	2	498.803094	995.591636	0.48095	0.0002399	0.55044	0.00027456	1.0314	0.00051446	498.80328376618695	53.002	1.465	52.743	52.326	53.791	-0.25838					117	39	6	0	0	0	0.97516	1	5585	5585		25.45	4.9683	1	22222000	+		89681	19310	62387	62489	99837	99837					0.09366360785020333
WPLPLLLTL	9	Unmodified	_WPLPLLLTL_					0	0	0		ENST00000368037.9_1_1:160797618-160797780:+|nuORF	ENST00000368037.9_1_1:160797618-160797780:+|nuORF	ENST00000368037.9_1_1:160797618-160797780:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.340087890625	2	533.338978	1064.6634	-0.011237	-5.9933E-06	2.1969	0.0011717	2.1856	0.0011657	533.3400481509884	97.915	0.8876	97.925	97.551	98.439	0.010231					58	20	4	0	0	0	0.98128	1	12471	12471		24.203	0	1	1273400			89682	12879	62388	62490	99838	99838					0.133658554188969
WPLQSSAGR	9	Unmodified	_WPLQSSAGR_					0	0	0		ENST00000465681.1_1_7:1064727-1065009:-|nuORF	ENST00000465681.1_1_7:1064727-1065009:-|nuORF	ENST00000465681.1_1_7:1064727-1065009:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	500.3045654296875	2	501.261791	1000.50903	-0.48801	-0.00024462	-0.98925	-0.00049587	-1.4773	-0.00074049	501.26114631351624	60.03	0.83996	59.781	59.377	60.217	-0.24842					35	21	3	0	0	0	0.024447	1	6669	6669		32.812	11.865	1	703710			89683	14789	62389	62491	99839	99839					0.008794189862328494
WPLWRLVSL	9	Unmodified	_WPLWRLVSL_					0	0	0		ENSG00000182492|ENST00000331595|BGN;ENST00000480756.1_1_X:152770089-152770275:+|nuORF	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	585.3447875976562	2	585.345126	1168.6757	-1.4366	-0.0008409	1.2366	0.00072382	-0.20003	-0.00011709	585.345605209649	90.874	1.3013	90.719	90.348	91.649	-0.1552					65	30	4	0	0	0	0.16468	2	11122	11122;11133		96.19	42.41	1	1804900			89684	9140	62390	62492	99840;99841	99840					0.09810891881920725
WPLWRLVSL	9	Unmodified	_WPLWRLVSL_					0	0	0		ENSG00000182492|ENST00000331595|BGN;ENST00000480756.1_1_X:152770089-152770275:+|nuORF	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.3450927734375	2	585.345126	1168.6757	-1.3581	-0.00079494	1.2021	0.00070367	-0.15592	-9.1269E-05	585.3456137670577	90.898	1.081	90.772	90.416	91.497	-0.12512					58	25	3	0	0	0	0.17822	1	11143	11143		93.195	49.079	1	1365300			89685	9140	62390	62492	99842	99842					0.09810891881920725
WPLWRLVSL	9	Unmodified	_WPLWRLVSL_					0	0	0		ENSG00000182492|ENST00000331595|BGN;ENST00000480756.1_1_X:152770089-152770275:+|nuORF	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	585.3436279296875	2	585.345126	1168.6757	-0.2574	-0.00015067	0.089024	5.211E-05	-0.16837	-9.8557E-05	585.3449915885994	90.943	1.2128	90.803	90.449	91.662	-0.13942					71	28	3	0	0	0	0.082191	2	11133	11133;11144		116.9	58.122	1	1550300			89686	9140	62390	62492	99843;99844	99843					0.09810891881920725
WPMRKKRPIA	10	Unmodified	_WPMRKKRPIA_					0	0	0			REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8826904296875	2	641.881884	1281.74922	0.76256	0.00048947	0.060715	3.8972E-05	0.82327	0.00052844	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.0665	1	11987	11987		37.159	0.71236	1	3421300	+		89687	31046	62391	62493	99845	99845					0.11961117052783266
WPNRLLAI	8	Unmodified	_WPNRLLAI_					0	0	0			REV__nc|ENSG00000215305|Q9H269-2|VPS16	REV__nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.795654296875	2	491.795269	981.575986	-0.29263	-0.00014392	1.4777	0.00072673	1.1851	0.00058281	491.7958180674967	47.843	1.5335	47.69	46.659	48.193	-0.153					136	43	4	0	0	0	0.95417	1	4865	4865		44.531	2.0566	1	6197300	+		89688	28805	62392	62494	99846	99846					0.08446074267976655
WPNRLLAI	8	Unmodified	_WPNRLLAI_					0	0	0			REV__nc|ENSG00000215305|Q9H269-2|VPS16	REV__nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	491.795654296875	2	491.795269	981.575986	-0.44006	-0.00021642	1.4995	0.00073743	1.0594	0.00052102	491.7957949388126	48.558	1.9044	48.405	48.159	50.064	-0.15277					86	52	4	0	0	0	0.96719	2	4941	4941;4954		42.474	7.2737	1	4613600	+		89689	28805	62392	62494	99847;99848	99847					0.08446074267976655
WPNRLLAI	8	Unmodified	_WPNRLLAI_					0	0	0			REV__nc|ENSG00000215305|Q9H269-2|VPS16	REV__nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	491.79571533203125	2	491.795269	981.575986	-1.0943	-0.00053818	2.0342	0.0010004	0.93987	0.00046222	491.7961070619947	48.176	2.2411	48.078	47.855	50.096	-0.097553					125	59	4	0	0	0	1.0572	1	4855	4855		28.254	1.4582	1	3339200	+		89690	28805	62392	62494	99849	99849					0.08446074267976655
WPNRLLAI	8	Unmodified	_WPNRLLAI_					0	0	0			REV__nc|ENSG00000215305|Q9H269-2|VPS16	REV__nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7953796386719	2	491.795269	981.575986	0.13012	6.3993E-05	0.85662	0.00042128	0.98674	0.00048528	491.79557204432604	48.3	5.1977	48.113	47.902	53.099	-0.18684					252	137	4	0	0	0	1.0133	1	4879	4879		35.201	1.6851	1	3829000	+		89691	28805	62392	62494	99850	99850					0.08446074267976655
WPNRLLAI	8	Unmodified	_WPNRLLAI_					0	0	0			REV__nc|ENSG00000215305|Q9H269-2|VPS16	REV__nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	491.7957458496094	2	491.795269	981.575986	-0.043829	-2.1555E-05	1.219	0.00059949	1.1752	0.00057794	491.79569659030346	55.146	1.8896	54.94	54.318	56.207	-0.20613					161	51	4	0	0	0	1.0017	1	5910	5910		37.028	5.4496	1	3172100	+		89692	28805	62392	62494	99851	99851					0.08446074267976655
WPNRLLAI	8	Unmodified	_WPNRLLAI_					0	0	0			REV__nc|ENSG00000215305|Q9H269-2|VPS16	REV__nc|ENSG00000215305|Q9H269-2|VPS16	MSMS	OPSCC_40_ClassI_Rep-3	6	491.7964172363281	2	491.795269	981.575986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.229	1	47.036	46.536	47.536	-0.19387								0	0	0	0.76268	1	4601	4601		37.028	1.8278	1		+		89693	28805	62392	62494	99852	99852					0.08446074267976655
WPPPQVMPE	9	Unmodified	_WPPPQVMPE_					0	0	0		ENST00000435439.5_1_22:46493806-46505161:+|nuORF;ENST00000360737.4_1_22:46493806-46505887:+|nuORF;ENST00000381051.6_1_22:46493806-46501738:+|nuORF	ENST00000435439.5_1_22:46493806-46505161:+|nuORF	ENST00000435439.5_1_22:46493806-46505161:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.76416015625	2	540.762778	1079.511	-1.3957	-0.00075474	4.3989	0.0023788	3.0032	0.001624	540.7649982622062	49.627	1.5688	49.701	49.169	50.737	0.074196					106	44	4	0	0	0	0.43973	2	5062	5053;5062		63.306	6.6991	1	5911500			89694	12775	62393	62495	99853;99854	99854					-0.025572883201675722
WPYRRPRRPRR	11	Unmodified	_WPYRRPRRPRR_					0	0	0			REV__ENST00000526510.5_1_11:67168691-67168991:-|nuORF	REV__ENST00000526510.5_1_11:67168691-67168991:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.80859375	3	532.646664	1594.91816	-0.13422	-7.1493E-05	0.032665	1.7399E-05	-0.10156	-5.4094E-05	532.9815405534396	45.759	0.10846	45.663	45.597	45.706	-0.096649					4	2	2	0	0	0	0.024896	1	4366	4366		6.3209	0	1	68844	+		89695	34448	62394	62496	99855	99855					0.14450154730457143
WQEKGKLL	8	Unmodified	_WQEKGKLL_					0	0	0		ENST00000470032.1_1_5:142416768-142421157:+|nuORF	ENST00000470032.1_1_5:142416768-142421157:+|nuORF	ENST00000470032.1_1_5:142416768-142421157:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2934265136719	2	501.292559	1000.57057	0.18746	9.3974E-05	-0.50911	-0.00025521	-0.32165	-0.00016124	501.2921172049721	50.437	1.7659	50.331	49.449	51.215	-0.10558					124	46	4	0	0	0	0.38451	1	5106	5106		99.375	11.621	1	12672000			89696	14922	62395	62497	99856	99856					0.07030350685522535
WQEKGKLL	8	Unmodified	_WQEKGKLL_					0	0	0		ENST00000470032.1_1_5:142416768-142421157:+|nuORF	ENST00000470032.1_1_5:142416768-142421157:+|nuORF	ENST00000470032.1_1_5:142416768-142421157:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2933349609375	2	501.292559	1000.57057	0.14172	7.1045E-05	-0.39982	-0.00020043	-0.2581	-0.00012938	501.29214621519253	50.705	1.8788	50.429	49.588	51.467	-0.27643					114	49	4	0	0	0	0.30053	1	5136	5136		111.65	5.2331	1	13198000			89697	14922	62395	62497	99857	99857					0.07030350685522535
WQEKGKLL	8	Unmodified	_WQEKGKLL_					0	0	0		ENST00000470032.1_1_5:142416768-142421157:+|nuORF	ENST00000470032.1_1_5:142416768-142421157:+|nuORF	ENST00000470032.1_1_5:142416768-142421157:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2938232421875	2	501.292559	1000.57057	-0.031846	-1.5964E-05	-0.12365	-6.1983E-05	-0.15549	-7.7947E-05	501.29229110283705	50.556	1.7659	50.375	49.495	51.261	-0.18071					116	46	4	0	0	0	0.30053	1	5128	5128		111.65	0	1	13409000			89698	14922	62395	62497	99858	99858					0.07030350685522535
WQETFYFLIC	10	Unmodified	_WQETFYFLIC_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|320|3|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|2.4753391642163933|0.2637255971055219|3.23|522.0|320|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	451.26666259765625	3	450.546008	1348.6162	-0.17591	-7.9254E-05	-3.1243	-0.0014076	-3.3002	-0.0014869	450.5446000819351	53.686	0.94694	53.782	53.444	54.391	0.095669					76	26	5	0	0	0	0.03519	1	5801	5801		20.837	12.43	1	2953800	+		89699	36242	62396	62498	99859	99859					-0.044167919144001644
WQIHYLELLWR	11	Unmodified	_WQIHYLELLWR_					0	0	0			REV__ENST00000271234.11_1_1:94018858-94019083:+|nuORF	REV__ENST00000271234.11_1_1:94018858-94019083:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2853393554688	3	519.617266	1555.82997	-0.99023	-0.00051454	-2.5426	-0.0013212	-3.5328	-0.0018357	519.6159309017737	51.704	0.49254	51.435	51.163	51.656	-0.26904					20	12	2	0	0	0	0.024797	1	5278	5278		25.892	6.629	1	311620	+		89700	29800	62397	62499	99860	99860					0.07428676576614635
WQIIRKIME	9	Unmodified	_WQIIRKIME_					0	0	0			REV__ENST00000460022.6_2_7:155435651-155436262:-|nuORF	REV__ENST00000460022.6_2_7:155435651-155436262:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	406.2351989746094	3	406.233876	1215.6798	0.13688	5.5605E-05	3.2753	0.0013306	3.4122	0.0013862	406.2351067814398	29.264	0.6395	29.092	28.808	29.447	-0.17258					34	14	3	0	0	0	0.82115	1	1769	1769		37.812	4.9991	1	1161900	+		89701	32840	62398	62500	99861	99861					0.08058613313346541
WQKKLAEDSTW	11	Unmodified	_WQKKLAEDSTW_					0	0	0		ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	ENSG00000187527|ENST00000342358|ATP13A5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.25909423828125	3	464.569981	1390.68811	-0.32935	-0.00015301	0.48274	0.00022426	0.15339	7.1258E-05	464.5701442949889	21.526	0.28975	21.436	21.255	21.545	-0.090094					8	5	2	0	0	0	0.024801	1	652	652		17.833	5.4003	1	13413			89702	9631	62399	62501	99862	99862					0.008398387636361804
WQKLKIDV	8	Unmodified	_WQKLKIDV_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.7606201171875	2	515.30821	1028.60187	0.55307	0.000285	-1.5997	-0.00082436	-1.0467	-0.00053936	515.3073379085812	70.773	0.69752	70.773	70.526	71.223	0					32	16	3	0	0	0	0.027866	1	8548	8548		27.882	0	1	797630	+		89703	28493	62400	62502	99863	99863					0.08870923719587154
WQKSTNSF	8	Unmodified	_WQKSTNSF_					0	0	0			REV__ENST00000577417.5_1_17:26970598-26971143:-|nuORF	REV__ENST00000577417.5_1_17:26970598-26971143:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.7418212890625	2	499.240524	996.466495	0.22386	0.00011176	-2.4774	-0.0012368	-2.2535	-0.001125	499.7429323906471	57	1.1443	56.798	56.404	57.549	-0.20208					79	30	6	0	0	0	0.77775	1	6196	6196		60.972	5.4677	1	8987400	+		89704	34507	62401	62503	99864	99864					-0.03187976141998661
WQKTEEMVES	10	Unmodified	_WQKTEEMVES_					0	0	0			REV__MS4A14|p.E470Q|1|0.07|ENSG00000166928|chr11:60416376-60416376|G/C|missense_variant	REV__MS4A14|p.E470Q|1|0.07|ENSG00000166928|chr11:60416376-60416376|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	633.7847290039062	2	633.787178	1265.5598	-0.7106	-0.00045037	-2.864	-0.0018152	-3.5746	-0.0022655	633.785324005903	42.995	0.68431	42.757	42.452	43.136	-0.23737					46	17	4	0	0	0	1.0461	1	3906	3906		42.864	3.8428	1	2376200	+		89705	36395	62402	62504	99865	99865					-0.06235464541737201
WQLAFAALL	9	Unmodified	_WQLAFAALL_					0	0	0			REV__ENSG00000132677|ENST00000537040|RHBG	REV__ENSG00000132677|ENST00000537040|RHBG	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.7950439453125	2	516.797478	1031.5804	-1.0159	-0.00052503	-2.8881	-0.0014926	-3.9041	-0.0020176	516.7958500093041	64.641	0.71621	64.686	64.372	65.089	0.045502					50	18	4	0	0	0	0.33184	2	7543	7531;7543		71.378	7.1706	1	4461500	+		89706	23308	62403	62505	99866;99867	99867					0.06587538690882866
WQLAFAALL	9	Unmodified	_WQLAFAALL_					0	0	0			REV__ENSG00000132677|ENST00000537040|RHBG	REV__ENSG00000132677|ENST00000537040|RHBG	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	516.797478	1031.5804	-0.63812	-0.00032978	-2.6766	-0.0013832	-3.3147	-0.001713	516.7956018450062	64.904	0.80093	64.67	64.413	65.214	-0.2345	0.0042578	0.00012457	NaN	71.378	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1014700	+		89707	23308	62403	62505							0.06587538690882866
WQLLSLLV	8	Unmodified	_WQLLSLLV_					0	0	0		nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B;ENST00000583204.5_1_17:30348129-30360999:+|nuORF	nc|ENSG00000185158|Q96QE4-2|LRRC37B	nc|ENSG00000185158|Q96QE4-2|LRRC37B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	486.2974853515625	2	486.299853	970.585153	-0.21435	-0.00010424	-4.0855	-0.0019868	-4.2998	-0.002091	486.29779633204737	67.313	0.7653	67.313	66.841	67.606	0					47	18	4	0	0	0	0.6248	1	8030	8030		73.975	0	1	2382400			89708	18589	62404	62506	99868	99868					0.09868422833665136
WQLRWDSV	8	Unmodified	_WQLRWDSV_					0	0	0			REV__ENST00000330651.10_1_22:50702225-50702900:-|nuORF	REV__ENST00000330651.10_1_22:50702225-50702900:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2758178710938	2	545.277441	1088.54033	-0.36245	-0.00019764	0.51438	0.00028048	0.15193	8.2841E-05	545.2776835041824	58.151	0.59798	57.918	57.583	58.181	-0.23363					18	14	2	0	0	0	0.99042	1	6374	6374		38.806	1.647	1	1327500	+		89709	30462	62405	62507	99869	99869					-0.00040007979691836226
WQMKCCKCD	9	Unmodified	_WQMKCCKCD_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.7282104492188	2	572.723958	1143.43336	0.54289	0.00031092	-1.5946	-0.00091326	-1.0517	-0.00060234	572.722152377352	51.796	0.55209	51.612	51.374	51.927	-0.18404					20	14	2	0	0	0	0.024427	1	5328	5328		51.335	24.643	1	178350			89710	9931	62406	62508	99870	99870					-0.13261708843856468
WQMTASTAF	9	Unmodified	_WQMTASTAF_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	521.73828125	2	521.73676	1041.45897	-0.87121	-0.00045454	3.1165	0.001626	2.2453	0.0011714	521.7383387166662	61.867	0.54029	61.93	61.582	62.122	0.062767					26	14	2	0	0	0	0.35646	1	7110	7110		68.787	2.3575	1	4645100	+		89711	22774	62407	62509	99871	99871					-0.06010451733936861
WQNVRALYI	9	Unmodified	_WQNVRALYI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000579213.1_1_18:65042371-65042539:+|nuORF;ENST00000498116.1_1_4:15732587-15732905:-|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.8220825195312	2	581.822015	1161.62948	-1.8929	-0.0011014	1.412	0.00082153	-0.48095	-0.00027983	581.8227187603308	64.678	0.73981	64.678	64.384	65.124	0					62	19	4	0	0	0	0.18915	3	7633	7621;7633;7646		90.777	38.313	1	4346500			89712	10190	62408	62510	99872;99873;99874	99873					0.05512826979838792
WQNVRALYI	9	Unmodified	_WQNVRALYI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000579213.1_1_18:65042371-65042539:+|nuORF;ENST00000498116.1_1_4:15732587-15732905:-|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.8216552734375	2	581.822015	1161.62948	-2.0871	-0.0012143	1.584	0.0009216	-0.5031	-0.00029271	581.8228287755848	64.965	0.75508	64.703	64.417	65.172	-0.2626					60	19	4	0	0	0	0.18915	2	7634	7634;7645		90.777	28.669	1	4278700			89713	10190	62408	62510	99875;99876	99875					0.05512826979838792
WQNVRALYI	9	Unmodified	_WQNVRALYI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000579213.1_1_18:65042371-65042539:+|nuORF;ENST00000498116.1_1_4:15732587-15732905:-|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.8214721679688	2	581.822015	1161.62948	-0.38805	-0.00022578	0.0051166	2.977E-06	-0.38293	-0.0002228	581.8219344078175	64.716	0.74638	64.762	64.448	65.195	0.045502					62	19	4	0	0	0	0.18915	2	7544	7544;7556		90.777	30.658	1	4705200			89714	10190	62408	62510	99877;99878	99877					0.05512826979838792
WQNWGPSPE	9	Unmodified	_WQNWGPSPE_					0	0	0		ENST00000475875.1_1_6:31633906-31634962:+|nuORF	ENST00000475875.1_1_6:31633906-31634962:+|nuORF	ENST00000475875.1_1_6:31633906-31634962:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	550.7742309570312	2	550.743431	1099.47231	-0.58217	-0.00032063	-4.4901	-0.0024729	-5.0722	-0.0027935	551.2446198805837	55.2	0.19977	55.049	55	55.199	-0.15036					7	5	2	0	0	0	0.024447	1	6057	6057		32.812	0	1	97849			89715	15072	62409	62511	99879	99879					-0.07344877630339397
WQQTPSPL	8	Unmodified	_WQQTPSPL_					0	0	0		ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000476367.5_1_3:156867074-156874849:-|nuORF	ENST00000479596.5_1_3:156869964-156874849:-|nuORF	ENST00000479596.5_1_3:156869964-156874849:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	478.743896484375	2	478.745442	955.476331	-0.77592	-0.00037147	-3.2829	-0.0015717	-4.0589	-0.0019432	478.74368549118896	29.594	1.0154	29.672	29.284	30.3	0.078344					72	24	4	0	0	0	0.44658	1	1764	1764		90.777	5.4172	1	6160700			89716	15056	62410	62512	99880	99880					-0.003187881366102374
WQQWKKQV	8	Unmodified	_WQQWKKQV_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	565.8320922851562	2	565.808908	1129.60326	-0.041378	-2.3412E-05	-0.9775	-0.00055308	-1.0189	-0.00057649	565.8079965562041	54.032	0.20358	53.786	53.717	53.92	-0.2453					9	6	2	0	0	0	0.027866	1	5710	5710		50.025	18.07	1	105330	+		89717	20651	62411	62513	99881	99881					0.04364557808344216
WQTYVDLR	8	Unmodified	_WQTYVDLR_					0	0	0			REV__nc|ENSG00000129116|Q8WX93-5|PALLD	REV__nc|ENSG00000129116|Q8WX93-5|PALLD	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.28955078125	2	540.777274	1079.53999	-1.3439	-0.00072677	-2.2974	-0.0012424	-3.6413	-0.0019691	540.7757463485598	53.367	0.43527	53.462	53.371	53.806	0.095669					18	11	2	0	0	0	0.027866	1	5686	5686		42.396	19.354	1	548250	+		89718	36648	62412	62514	99882	99882					0.003405723004561878
WQWELRLVL	9	Unmodified	_WQWELRLVL_					0	0	0		ENST00000321680.10_1_6:147527107-147527200:+|nuORF	ENST00000321680.10_1_6:147527107-147527200:+|nuORF	ENST00000321680.10_1_6:147527107-147527200:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	414.9057922363281	3	414.904636	1241.69208	0.13742	5.7015E-05	2.3099	0.00095841	2.4474	0.0010154	414.90568220470885	21.158	1.9282	21.23	20.86	22.789	0.071487					101	39	5	0	0	0	0.84115	1	598	598		36.447	4.8125	1	3505200			89719	12211	62413	62515	99883	99883					0.08089973048026877
WQWLKWRRLRR	11	Unmodified	_WQWLKWRRLRR_					0	0	0		ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	562.0005493164062	3	561.998815	1682.97462	0.023621	1.3275E-05	2.9644	0.001666	2.988	0.0016793	562.0004968891831	20.599	0.82834	20.431	20.197	21.025	-0.16774					45	16	5	0	0	0	1.1135	1	572	572		1.3219	0.089996	1	253060			89720	16594	62414	62516	99884	99884					0.16044782567132643
WQWLKWRRLRR	11	Unmodified	_WQWLKWRRLRR_					0	0	0		ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	561.998815	1682.97462	0.62438	0.0003509	2.5926	0.001457	3.217	0.0018079	562.0002279706467	20.768	0.68883	20.572	20.286	20.975	-0.19577	0.031636	-0.00090518	NaN	1.3219	42	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224390			89721	16594	62414	62516							0.16044782567132643
WQWLKWRRLRR	11	Unmodified	_WQWLKWRRLRR_					0	0	0		ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	ENST00000551099.5_1_12:113659271-113664634:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	561.998815	1682.97462	-0.86581	-0.00048659	3.8124	0.0021426	2.9466	0.001656	562.3352219623755	20.842	0.98892	20.619	20.315	21.304	-0.22344	0.078051	0.0011514	NaN	1.3219	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178120			89722	16594	62414	62516							0.16044782567132643
WRARRWRWWRN	11	Unmodified	_WRARRWRWWRN_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	433.2555236816406	4	432.98563	1727.91341	0.074315	3.2177E-05	0.87281	0.00037792	0.94713	0.00041009	433.2366875790972	102.98	0.24094	102.85	102.67	102.91	-0.12783					6	5	2	0	0	0	0.024904	1	12797	12797		0.3405	0.3405	1	769750	+		89723	36928	62415	62517	99885	99885					0.07857270587714993
WRCSKRATL	9	Unmodified	_WRCSKRATL_					0	0	0		CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3118286132812	2	560.805842	1119.59713	0.70967	0.00039799	0.78822	0.00044204	1.4979	0.00084003	560.805269477713	97.764	0.61421	97.627	97.24	97.854	-0.1367					17	13	2	0	0	0	0.024466	1	12113	12113		39.253	2.0937	1	82370			89724	254	62416	62518	99886	99886					0.04211716305189839
WRCSKRATL	9	Unmodified	_WRCSKRATL_					0	0	0		CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	560.805842	1119.59713	-0.15175	-8.5101E-05	-0.43059	-0.00024148	-0.58234	-0.00032658	561.3072011477756	97.982	0.59852	97.982	97.549	98.148	0	0.15262	-0.00025613	NaN	47.657	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102130			89725	254	62416	62518							0.04211716305189839
WRCSKRATL	9	Unmodified	_WRCSKRATL_					0	0	0		CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	560.805842	1119.59713	0.59334	0.00033275	-0.39574	-0.00022193	0.1976	0.00011082	560.8055425242062	98.019	0.49996	98.017	97.724	98.224	-0.0020828	0.18792	-0.00021704	NaN	47.657	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52654			89726	254	62416	62518							0.04211716305189839
WRCSKRATL	9	Unmodified	_WRCSKRATL_					0	0	0		CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	CEP170|p.R388W|1|0.25|ENSG00000143702|chr1:243186369-243186369|T/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.805842	1119.59713	-0.35274	-0.00019782	0.11055	6.1995E-05	-0.2422	-0.00013583	560.8053418479957	97.855	0.35931	97.69	97.397	97.756	-0.1652	-0.13883	0.00035081	NaN	47.657	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70791			89727	254	62416	62518							0.04211716305189839
WRDESAANEEG	11	Unmodified	_WRDESAANEEG_					0	0	0			REV__ANGEL1|p.F561Cfs*50|1|0.38|ENSG00000013523|chr14:76791308-76791309|-/GGCT|frameshift_variant	REV__ANGEL1|p.F561Cfs*50|1|0.38|ENSG00000013523|chr14:76791308-76791309|-/GGCT|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	632.26611328125	2	632.265456	1262.51636	-0.96481	-0.00061002	1.5372	0.00097191	0.57238	0.00036189	632.2664681287137	33.148	1.2686	32.983	32.638	33.906	-0.16565					85	31	4	0	0	0	0.96481	1	2346	2346		28.081	0	1	2745100	+		89728	19134	62417	62519	99887	99887					-0.10439937994647153
WRDPLLLLLL	10	Unmodified	_WRDPLLLLLL_					0	0	0		HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|60|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|60|1|sense	HERVS71-int_dup59|chr7:134551542-134557372:+|1.9298208806451824|0.3399660141451394|2.51|515.0|60|1|sense	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	626.39404296875	2	626.394816	1250.77508	0.54149	0.00033919	0.5568	0.00034877	1.0983	0.00068796	626.3949611496873	110.55	0.26875	110.54	110.38	110.64	-0.011299					18	9	2	0	0	0	1.1082	1	13961	13961		14.865	2.0532	1	3140000			89729	17732	62418	62520	99888	99888					0.15972289776050275
WRDYDRYYERN	11	Unmodified	_WRDYDRYYERN_					0	0	0		ENSG00000091009|ENST00000265271|RBM27;RBM27|p.S846Ffs*34|1|0.35|ENSG00000091009|chr5:146269428-146269429|-/T|frameshift_variant	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.9129638671875	3	545.914811	1634.7226	-0.68058	-0.00037154	-2.3683	-0.0012929	-3.0489	-0.0016644	545.91353988436	27.248	0.72079	27.08	26.766	27.487	-0.16816					49	16	4	0	0	0	1.1135	1	1477	1477		6.001	2.382	1	1653100			89730	1947	62419	62521	99889	99889					-0.06936945095526426
WREALAAVL	9	Unmodified	_WREALAAVL_					0	0	0		nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;LIN54-SEC31A|4|fusion;LIN54-SEC31A|2|fusion;LIN54-SEC31A|1|fusion;LIN54-SEC31A|8|fusion;LIN54-SEC31A|6|fusion;LIN54-SEC31A|5|fusion;LIN54-SEC31A|3|fusion;LIN54-SEC31A|7|fusion	nc|ENSG00000138674|O94979-3|SEC31A;LIN54-SEC31A|4|fusion	nc|ENSG00000138674|O94979-3|SEC31A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	514.8003540039062	2	514.798009	1027.58147	-0.54969	-0.00028298	3.3492	0.0017241	2.7995	0.0014412	514.7996695574594	45.302	1.4969	45.203	44.868	46.365	-0.099445					97	41	5	0	0	0	0.70186	1	4321	4321		45.952	6.6991	1	15757000			89731	5266;17915	62420	62522	99890	99890					0.06877753059779934
WRELVPKIK	9	Unmodified	_WRELVPKIK_					0	0	0			REV__nc|ENSG00000106536|P78424-2|POU6F2	REV__nc|ENSG00000106536|P78424-2|POU6F2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.29638671875	2	584.863683	1167.71281	-0.48096	-0.0002813	-2.395	-0.0014007	-2.8759	-0.001682	584.8620318139054	50.872	0.48353	50.595	50.407	50.891	-0.27643					27	12	3	0	0	0	0.024484	1	5200	5200		45.972	14.442	1	695690	+		89732	21624	62421	62523	99891	99891					0.1356656342768474
WRENEYLTL	9	Unmodified	_WRENEYLTL_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	408.5390930175781	3	408.540022	1222.59824	-0.16081	-6.5699E-05	-1.9068	-0.000779	-2.0676	-0.0008447	408.5391541294741	30.663	0.98205	30.485	30.124	31.106	-0.17817					55	23	3	0	0	0	0.70156	1	1969	1969		45.972	0.064128	1	868820			89733	16039	62422	62524	99892	99892					-0.004157908449087699
WRENEYLTL	9	Unmodified	_WRENEYLTL_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	408.5387878417969	3	408.540022	1222.59824	-0.1507	-6.1569E-05	-2.0801	-0.00084979	-2.2308	-0.00091136	408.5391241291395	30.727	1.4145	30.577	29.967	31.382	-0.14952					66	34	3	0	0	0	0.74711	1	1969	1969		42.864	0.52619	1	984540			89734	16039	62422	62524	99893	99893					-0.004157908449087699
WRENEYLTL	9	Unmodified	_WRENEYLTL_					0	0	0		ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	ENST00000523206.5_1_8:95850795-95884149:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	408.540022	1222.59824	-0.12337	-5.0402E-05	-1.9326	-0.00078955	-2.056	-0.00083995	408.5391060376896	30.778	0.90362	30.535	30.206	31.11	-0.24291	0.0027686	2.4366E-05	NaN	45.972	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763820			89735	16039	62422	62524							-0.004157908449087699
WREYEEMEHEV	11	Unmodified	_WREYEEMEHEV_					0	0	0			REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF	REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	512.7871704101562	3	512.885641	1535.63509	-0.28049	-0.00014386	-2.3394	-0.0011998	-2.6199	-0.0013437	513.2198758118182	71.093	0.18878	71.104	71.05	71.239	0.010735					6	4	2	0	0	0	0.024801	1	8546	8546		29.551	15.465	1	70245	+		89736	25600	62423	62525	99894	99894					-0.11129907081362944
WREYVFWKNRD	11	Unmodified	_WREYVFWKNRD_					0	0	0		ENST00000541972.5_1_12:7651687-7653742:-|nuORF	ENST00000541972.5_1_12:7651687-7653742:-|nuORF	ENST00000541972.5_1_12:7651687-7653742:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2933349609375	3	533.600275	1597.779	-0.58089	-0.00030996	3.9631	0.0021147	3.3822	0.0018048	533.9367041335804	24.954	0.34861	24.727	24.538	24.887	-0.22683					17	7	3	0	0	0	0.02486	1	1148	1148		8.7993	5.1802	1	92575			89737	16445	62424	62526	99895	99895					0.004017275317892199
WRFWRICKYKW	11	Unmodified	_WRFWRICKYKW_					0	0	0		ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3355712890625	3	557.962491	1670.86564	0.38769	0.00021632	-2.7951	-0.0015596	-2.4074	-0.0013433	557.9600816977457	19.052	0.69259	18.891	18.688	19.381	-0.16079					22	13	3	0	0	0	0.024888	1	437	437		9.6461	3.3253	1	52833			89738	13959	62425	62527	99896	99896					0.0570443555266138
WRFWRICKYKW	11	Unmodified	_WRFWRICKYKW_					0	0	0		ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	558.3356323242188	3	557.962491	1670.86564	1.6406	0.00091539	-4.3784	-0.002443	-2.7378	-0.0015276	558.2955711796913	19.243	0.54448	19.01	18.78	19.325	-0.23345					24	10	4	0	0	0	0.024873	1	411	411		14.086	8.3872	1	32440			89739	13959	62425	62527	99897	99897					0.0570443555266138
WRIDEPVD	8	Unmodified	_WRIDEPVD_					0	0	0			REV__ENSG00000177666|ENST00000336615|PNPLA2	REV__ENSG00000177666|ENST00000336615|PNPLA2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	514.2943725585938	2	515.253631	1028.49271	0.042617	2.1959E-05	1.8371	0.0009466	1.8798	0.00096856	515.255201934373	86.713	0.42488	86.668	86.423	86.848	-0.045105					12	9	2	0	0	0	0.027866	1	10840	10840		47.916	27.919	1	27711	+		89740	27134	62426	62528	99898	99898					-0.020397069705268223
WRKIQTQL	8	Unmodified	_WRKIQTQL_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP;ENST00000559761.5_1_15:90340736-90342749:-|nuORF	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	537.2823486328125	2	536.816733	1071.61891	-1.0629	-0.00057059	-0.20002	-0.00010738	-1.2629	-0.00067796	536.8164853802981	66.001	0.68102	65.75	65.479	66.16	-0.25112					30	12	3	0	0	0	0.027866	1	7558	7558		65.803	9.0821	1	1049700			89741	7610	62427	62529	99899	99899					0.08596844325415987
WRKLAGKVE	9	Unmodified	_WRKLAGKVE_					0	0	0			REV__ENSG00000177212|ENST00000641220|OR2T33	REV__ENSG00000177212|ENST00000641220|OR2T33	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.84814453125	2	543.824558	1085.63456	-0.12812	-6.9677E-05	-0.029975	-1.6301E-05	-0.1581	-8.5978E-05	543.8238987987556	20.911	0.43357	20.737	20.488	20.921	-0.17382					16	8	3	0	0	0	0.024344	1	601	601		37.812	8.6415	1	24872	+		89742	27094	62428	62530	99900	99900					0.09517130842459665
WRKLFQYQYKR	11	Unmodified	_WRKLFQYQYKR_					0	0	0			REV__ENST00000342992.10_3_2:179542611-179544107:-|nuORF	REV__ENST00000342992.10_3_2:179542611-179544107:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	538.7721557617188	3	539.300048	1614.87832	-0.4758	-0.0002566	0.78696	0.00042441	0.31116	0.00016781	539.3001910301338	47.429	0.51835	47.332	46.934	47.452	-0.096649					18	13	2	0	0	0	0.024898	1	4646	4646		5.6988	4.28	1	253480	+		89743	30661	62429	62531	99901	99901					0.09547170216524137
WRLGGGGP	8	Unmodified	_WRLGGGGP_					0	0	0			REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	400.2304992675781	2	400.214112	798.413671	0.97812	0.00039146	4.439	0.0017766	5.4171	0.002168	400.21589919663495	22.502	0.46584	22.502	22.291	22.757	0					13	9	2	0	0	0	0.027866	1	770	770		29.842	6.8048	1	36143	+		89744	34673	62430	62532	99902	99902					0.006401105858572009
WRLGGGGP	8	Unmodified	_WRLGGGGP_					0	0	0			REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	400.214112	798.413671	0.27743	0.00011103	4.8038	0.0019225	5.0812	0.0020336	400.2159645744539	22.59	0.37548	22.514	22.363	22.739	-0.075294	0.010838	0.00014723	NaN	37.028	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27787	+		89745	34673	62430	62532							0.006401105858572009
WRLGGGGP	8	Unmodified	_WRLGGGGP_					0	0	0			REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	400.214112	798.413671	1.8816	0.00075302	4.0284	0.0016122	5.91	0.0023652	400.21573013680546	22.42	0.56901	22.494	22.268	22.837	0.073954	-0.0095139	-0.00047339	NaN	37.028	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34333	+		89746	34673	62430	62532							0.006401105858572009
WRLNRAEL	8	Unmodified	_WRLNRAEL_					0	0	0			REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	REV__nc|ENSG00000159337|Q86XP0-2|PLA2G4D	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.298583984375	2	529.298707	1056.58286	-1.6642	-0.00088083	-0.10945	-5.7931E-05	-1.7736	-0.00093876	529.2982410615775	30.844	0.96046	30.844	30.508	31.469	0					44	22	3	0	0	0	0.845	1	2017	2017		55.504	0.72789	1	2370900	+		89747	36826	62431	62533	99903	99903					0.05683387148565089
WRLVVVIS	8	Unmodified	_WRLVVVIS_					0	0	0		ENST00000453304.5_1_4:96470007-96470169:-|nuORF	ENST00000453304.5_1_4:96470007-96470169:-|nuORF	ENST00000453304.5_1_4:96470007-96470169:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	486.30731201171875	2	486.30547	970.596387	0.1609	7.8244E-05	-1.3711	-0.00066678	-1.2102	-0.00058853	486.30473320464193	73.114	0.8673	72.838	72.511	73.379	-0.27613					57	21	4	0	0	0	0.88442	1	8873	8873		52.299	11.727	1	1708700			89748	14546	62432	62534	99904	99904					0.10991244927799926
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	481.28289794921875	3	481.283503	1440.82868	0.24413	0.0001175	-0.37326	-0.00017964	-0.12913	-6.2146E-05	481.2832783353761	101.2	1.9516	101.2	100.57	102.53	0					136	44	4	0	0	0	1.1333	1	12952	12952		28.081	3.8056	1	1053600			89749	4585	62433	62535	99905	99905					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	481.2830810546875	3	481.283503	1440.82868	-0.010732	-5.1652E-06	0.039146	1.884E-05	0.028414	1.3675E-05	481.2834447370759	101.19	1.8067	101.19	100.65	102.46	0.0090256					124	41	4	0	0	0	1.1277	1	12967	12967		25.126	11.618	1	1064100			89750	4585	62433	62535	99906	99906					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.2833557128906	3	481.283503	1440.82868	0.15022	7.2296E-05	0.065487	3.1518E-05	0.2157	0.00010381	481.2833604720617	101.32	1.8982	101.31	100.65	102.55	-0.0054474					137	43	4	0	0	0	0.88978	2	12895	12895;12919		54.722	21.683	1	1065800			89751	4585	62433	62535	99907;99908	99907					0.12589900051079894
WRPLLKAI	8	Unmodified	_WRPLLKAI_					0	0	0		ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	ENST00000574094.5_1_16:16275679-16317348:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.7691650390625	2	498.821287	995.628021	0.83745	0.00041774	1.6493	0.00082272	2.4868	0.0012405	498.8223947373154	19.639	0.24908	19.439	19.305	19.554	-0.2001					7	4	2	0	0	0	0.027866	1	443	443		13.775	5.544	1	20326			89752	1959	62434	62536	99909	99909					0.13003237681755309
WRQDRQKWLFW	11	Unmodified	_WRQDRQKWLFW_					0	0	0			REV__ENST00000529107.5_2_17:72211823-72233491:+|nuORF	REV__ENST00000529107.5_2_17:72211823-72233491:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	413.1947937011719	4	412.967843	1647.84226	1.8844	0.0007782	0.69549	0.00028721	2.5799	0.0010654	412.9674835825976	23.38	0.25002	23.189	23.034	23.284	-0.19117					7	5	2	0	0	0	0.024901	1	881	881		1.523	0.10423	1	55114	+		89753	29789	62435	62537	99910	99910					0.04425713039677248
WRRHHRRQRLH	11	Unmodified	_WRRHHRRQRLH_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.5326232910156	4	410.235979	1636.91481	0.60805	0.00024944	-1.3116	-0.00053805	-0.70351	-0.00028861	410.73681120598235	18.705	0.84051	18.501	18.212	19.053	-0.20371					45	16	4	0	0	0	0.024898	1	313	313		3.026	0	1	94472	+		89754	23315	62436	62538	99911	99911					0.12182904676478756
WRRLFKKIWIF	11	Unmodified	_WRRLFKKIWIF_					0	0	0		ENST00000541657.5_3_12:122240596-122240792:-|nuORF;ENST00000541694.5_1_12:122240596-122240713:-|nuORF;ENST00000536662.5_1_12:122240596-122240785:-|nuORF	ENST00000541657.5_3_12:122240596-122240792:-|nuORF	ENST00000541657.5_3_12:122240596-122240792:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.2606811523438	3	531.657396	1591.95036	0.22542	0.00011984	-2.0739	-0.0011026	-1.8485	-0.00098278	531.9913084373053	104.19	0.52415	104.03	103.68	104.2	-0.16791					24	13	2	0	0	0	0.024888	1	12939	12939		9.6461	6.2374	1	43351			89755	16363	62437	62539	99912	99912					0.17806129360906198
WRRNYLLN	8	Unmodified	_WRRNYLLN_					0	0	0		ENST00000532094.5_1_11:420655-431830:-|nuORF;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	ENST00000532094.5_1_11:420655-431830:-|nuORF	ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.7946166992188	2	567.811982	1133.60941	-0.45155	-0.00025639	-0.5159	-0.00029294	-0.96745	-0.00054933	567.8136982806798	72.731	0.73604	72.741	72.371	73.107	0.0096512					40	17	3	0	0	0	0.027866	1	8741	8741		42.474	1.0478	1	311190			89756	16280	62438	62540	99913	99913					0.04795076039886226
WRRRQYLRIVQ	11	Unmodified	_WRRRQYLRIVQ_					0	0	0			REV__ENSG00000186160|ENST00000334194|CYP4Z1	REV__ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.6434936523438	3	525.311059	1572.91135	-0.81505	-0.00042815	-0.15564	-8.1761E-05	-0.97069	-0.00050991	525.3100585076984	103.86	1.5846	103.86	103.12	104.71	0					131	38	6	0	0	0	1.1077	1	13306	13306		9.2118	2.8909	1	375190	+		89757	27829	62439	62541	99914	99914					0.1478079705923392
WRRRRKMRRRE	11	Unmodified	_WRRRRKMRRRE_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.5130920410156	4	422.2512	1684.9757	-0.15903	-6.7151E-05	3.4462	0.0014552	3.2872	0.001388	422.50337294658533	31.904	0.40315	31.973	31.766	32.169	0.068962					11	9	2	0	0	0	0.024889	1	2123	2123		7.3413	6.0194	1	67310	+		89758	29566	62440	62542	99915	99915					0.16060673664401293
WRRRRTQRRCW	11	Unmodified	_WRRRRTQRRCW_					0	0	0		ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	416.2209777832031	4	415.730101	1658.8913	2.1684	0.00090149	-4.2635	-0.0017725	-2.0951	-0.00087098	415.7282199018896	23.945	1.2231	23.764	23.411	24.634	-0.18089					67	27	4	0	0	0	0.024904	1	1060	1060		1.3219	1.3219	1	336560			89759	14465	62441	62543	99916	99916					0.08820722847644902
WRRWQPRIWAL	11	Unmodified	_WRRWQPRIWAL_					0	0	0		ENSG00000129159|ENST00000265969|KCNC1;nc|ENSG00000129159|P48547|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	ENSG00000129159|ENST00000265969|KCNC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.95166015625	3	523.29675	1566.86842	4.203	0.0021994	2.5547	0.0013369	6.7577	0.0035363	523.2980277353149	17.696	0.84043	17.446	17.276	18.116	-0.25049					31	16	3	0	0	0	0.02489	1	210	210		9.2118	3.7989	1	88826			89760	4333	62442	62544	99917	99917					0.10766027001841394
WRSELLYS	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))WRSELLYS_					1	0	0		ENST00000476243.5_1_17:16246230-16247960:-|nuORF	ENST00000476243.5_1_17:16246230-16247960:-|nuORF	ENST00000476243.5_1_17:16246230-16247960:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.3111572265625	2	548.277106	1094.53966	-0.56161	-0.00030792	-3.58	-0.0019628	-4.1416	-0.0022707	548.2750285666236	54.511	3.8441	54.609	52.908	56.752	0.098015					206	107	3	0	0	0	0.027866	1	6142	6142		115.46	36.008	1	1538900			89761	15083	62443	62545	99918	99918					-0.0038284741938241496
WRSLQFGLN	9	Unmodified	_WRSLQFGLN_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	561.2990112304688	2	560.79854	1119.58253	0.55268	0.00030994	-2.036	-0.0011418	-1.4833	-0.00083183	560.7975586996677	99.492	0.43681	99.357	99.157	99.593	-0.13526					18	10	2	0	0	0	0.91321	1	12320	12320		31.53	1.2121	1	69015	+		89762	20873	62444	62546	99919	99919					0.02751967428730495
WRSLQFGLN	9	Unmodified	_WRSLQFGLN_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	560.79854	1119.58253	0.55268	0.00030994	-2.036	-0.0011418	-1.4833	-0.00083183	560.7975586996677	99.492	0.43681	99.357	99.157	99.593	-0.13526	-0.001726	0.00024721	NaN	31.53	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69015	+		89763	20873	62444	62546							0.02751967428730495
WRSLQFGLN	9	Unmodified	_WRSLQFGLN_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	560.79854	1119.58253	0.87594	0.00049122	-2.9305	-0.0016434	-2.0546	-0.0011522	560.7971807161572	99.46	0.46497	99.336	99.176	99.641	-0.12458	-0.022846	-0.00075607	NaN	31.53	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59380	+		89764	20873	62444	62546							0.02751967428730495
WRSLQFGLN	9	Unmodified	_WRSLQFGLN_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	560.79854	1119.58253	-0.20851	-0.00011693	-1.6659	-0.00093424	-1.8744	-0.0010512	560.7979164334712	99.552	0.43417	99.383	99.202	99.637	-0.16862	0.024572	0.00066228	NaN	31.53	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69997	+		89765	20873	62444	62546							0.02751967428730495
WRSPKLLLKER	11	Unmodified	_WRSPKLLLKER_					0	0	0		ENST00000264010.8_1_16:67605120-67644919:+|nuORF	ENST00000264010.8_1_16:67605120-67644919:+|nuORF	ENST00000264010.8_1_16:67605120-67644919:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	475.9609680175781	3	475.961144	1424.8616	1.8091	0.00086108	-1.815	-0.00086386	-0.0058437	-2.7814E-06	475.9602062919514	63.537	1.4911	63.592	63.233	64.724	0.054104					116	40	5	0	0	0	1.0834	1	7371	7371		15.921	0.58754	1	5895500			89766	11547	62445	62547	99920	99920					0.16616669330596778
WRTLGRTTCV	10	Unmodified	_WRTLGRTTCV_					0	0	0			REV__ENST00000459703.5_1_6:36709028-36709205:-|nuORF	REV__ENST00000459703.5_1_6:36709028-36709205:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	596.8162841796875	2	596.816407	1191.61826	-0.76372	-0.0004558	0.7747	0.00046235	0.010982	6.5541E-06	596.8167418363746	34.333	1.05	34.329	33.908	34.958	-0.0045624					72	26	4	0	0	0	1.0508	1	2543	2543		39.253	0	1	2508800	+		89767	32826	62446	62548	99921	99921					0.03011681614043482
WRTPEPVP	8	Unmodified	_WRTPEPVP_					0	0	0		ENSG00000126246|ENST00000246532|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	490.2743835449219	2	491.261259	980.507966	-0.42951	-0.000211	4.1778	0.0020524	3.7483	0.0018414	491.26320304082566	75.748	1.3638	75.504	75.229	76.593	-0.24455					70	35	3	0	0	0	0.027866	1	9285	9285		57.811	17.239	1	2513700			89768	4188	62447	62549	99922	99922					0.01693204617322408
WRTRKRRRWRY	11	Unmodified	_WRTRKRRRWRY_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	574.7847290039062	3	574.001219	1718.98183	-0.68008	-0.00039037	-1.8899	-0.0010848	-2.57	-0.0014752	574.0002337473096	52.596	0.27007	52.335	52.17	52.44	-0.26069					9	6	2	0	0	0	0.024901	1	5477	5477		3.6191	2.2003	1	93478			89769	14217	62448	62550	99923	99923					0.15109515167569043
WRVKGPPLT	9	Unmodified	_WRVKGPPLT_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	526.8450927734375	2	527.313826	1052.6131	-0.71672	-0.00037794	-1.1576	-0.0006104	-1.8743	-0.00098833	527.3115967287782	55.681	1.139	55.779	55.371	56.51	0.098015					48	30	4	0	0	0	0.024292	1	6086	6086		58.782	0.55203	1	369770	+		89770	24270	62449	62551	99924	99924					0.08889745813735317
WRVKGPPLT	9	Unmodified	_WRVKGPPLT_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.313826	1052.6131	-1.2097	-0.00063787	0.44226	0.00023321	-0.7674	-0.00040466	527.3136113573172	55.908	0.43523	55.693	55.489	55.924	-0.21551	-0.11822	3.5698E-05	NaN	58.782	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139640	+		89771	24270	62449	62551							0.08889745813735317
WRVRPPCPPDA	11	Unmodified	_WRVRPPCPPDA_					0	0	0			REV__ENST00000485102.1_1_X:48673225-48673405:+|nuORF	REV__ENST00000485102.1_1_X:48673225-48673405:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	431.8885192871094	3	431.88888	1292.64481	0.66503	0.00028722	-1.5976	-0.00069	-0.9326	-0.00040278	431.88829163427346	21.79	0.66684	21.613	21.256	21.923	-0.17721					33	13	3	0	0	0	1.0371	1	714	714		28.577	0	1	266420	+		89772	33556	62450	62552	99925	99925					0.010193705053779922
WRWHRARWPRE	11	Unmodified	_WRWHRARWPRE_					0	0	0			REV__chr5:136049580-136052976|122|208.31|0.73|8.15|+|0|TGFBI,None|2	REV__chr5:136049580-136052976|122|208.31|0.73|8.15|+|0|TGFBI,None|2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	409.5423278808594	4	409.718359	1634.84433	0.47343	0.00019397	2.9769	0.0012197	3.4503	0.0014137	409.71957703452756	22.6	0.4178	22.398	22.097	22.515	-0.20199					11	8	2	0	0	0	0.024898	1	763	763		3.2113	3.2113	1	37318	+		89773	19441	62451	62553	99926	99926					0.05230186568132922
WRWHRARWPRE	11	Unmodified	_WRWHRARWPRE_					0	0	0			REV__chr5:136049580-136052976|122|208.31|0.73|8.15|+|0|TGFBI,None|2	REV__chr5:136049580-136052976|122|208.31|0.73|8.15|+|0|TGFBI,None|2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		4	409.718359	1634.84433	0.55946	0.00022922	2.7937	0.0011446	3.3532	0.0013739	410.22069513345565	22.313	0.3667	22.124	22.007	22.374	-0.18894	-0.13731	-0.00025963	NaN	3.2113	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33854	+		89774	19441	62451	62553							0.05230186568132922
WRWLLRRGQDM	11	Unmodified	_WRWLLRRGQDM_					0	0	0			REV__ENST00000371936.5_1_X:114252225-114253471:-|nuORF	REV__ENST00000371936.5_1_X:114252225-114253471:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	505.2695617675781	3	506.269983	1515.78812	0.24418	0.00012362	-1.2022	-0.00060864	-0.95802	-0.00048502	506.26942944413815	18.765	0.69272	18.562	18.163	18.856	-0.20371					30	13	4	0	0	0	0.024856	1	347	347		13.508	8.095	1	93903	+		89775	31184	62452	62554	99927	99927					0.050857976164707
WRWLLRRGQDM	11	Unmodified	_WRWLLRRGQDM_					0	0	0			REV__ENST00000371936.5_1_X:114252225-114253471:-|nuORF	REV__ENST00000371936.5_1_X:114252225-114253471:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	506.269983	1515.78812	2.7502	0.0013923	-3.8519	-0.0019501	-1.1017	-0.00055775	506.2679864957252	18.161	0.49093	18.161	17.94	18.431	0	-0.18625	-0.0021345	NaN	13.508	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154330	+		89776	31184	62452	62554							0.050857976164707
WRWRRWRKR	9	Unmodified	_WRWRRWRKR_					0	0	0			REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.9586486816406	3	495.95695	1484.84902	0.046058	2.2843E-05	4.2599	0.0021127	4.306	0.0021356	495.9587070757246	102.16	1.6578	102.16	101.55	103.21	0					119	38	5	0	0	0	0.98462	1	13087	13087		23.523	1.7423	1	937260	+		89777	29624	62453	62555	99928	99928					0.1259911550155266
WSALVRSRW	9	Unmodified	_WSALVRSRW_					0	0	0			REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.281494140625	2	580.819807	1159.62506	-2.8451	-0.0016525	3.144	0.0018261	0.29896	0.00017364	580.8214839708644	52.15	0.46924	51.881	51.656	52.125	-0.26903					15	12	2	0	0	0	0.023417	1	5429	5429		90.777	23.283	1	118960	+		89778	31770	62454	62556	99929	99929					0.051633625569365904
WSALVRSRW	9	Unmodified	_WSALVRSRW_					0	0	0			REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	580.819807	1159.62506	-1.1351	-0.00065928	2.235	0.0012981	1.0999	0.00063887	580.8210563264072	51.858	0.56863	51.858	51.667	52.236	0	0.018458	0.00031325	NaN	90.777	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413680	+		89779	31770	62454	62556							0.051633625569365904
WSALVRSRW	9	Unmodified	_WSALVRSRW_					0	0	0			REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	580.819807	1159.62506	-0.87891	-0.00051049	2.002	0.0011628	1.1231	0.00065231	580.8207547776766	52.059	0.49831	51.912	51.711	52.209	-0.14735	0.072457	4.2543E-05	NaN	90.777	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353960	+		89780	31770	62454	62556							0.051633625569365904
WSALVRSRW	9	Unmodified	_WSALVRSRW_					0	0	0			REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	580.819807	1159.62506	-0.111	-6.4468E-05	-0.89688	-0.00052092	-1.0079	-0.00058539	580.8193664722763	51.828	0.36482	51.709	51.504	51.869	-0.11875	-0.13059	-0.0033249	NaN	90.777	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79029	+		89781	31770	62454	62556							0.051633625569365904
WSAVGLHA	8	Unmodified	_WSAVGLHA_					0	0	0			REV__ENST00000472910.5_1_7:105260689-105318420:-|nuORF	REV__ENST00000472910.5_1_7:105260689-105318420:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.24053955078125	2	420.72177	839.428987	0.2857	0.0001202	-0.076341	-3.2118E-05	0.20936	8.808E-05	420.7216809277053	23.45	0.64503	23.248	22.967	23.612	-0.20193					25	14	2	0	0	0	0.027866	1	983	983		23.037	18.355	1	107440	+		89782	33220	62455	62557	99930	99930					0.0028497738304622544
WSAVVEERDA	10	Unmodified	_WSAVVEERDA_					0	0	0		nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	nc|ENSG00000166947|P16452-3|EPB42	nc|ENSG00000166947|P16452-3|EPB42	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.2811279296875	2	581.280377	1160.5462	-1.9719	-0.0011462	1.4309	0.00083178	-0.54094	-0.00031444	581.2811832544726	52.38	0.8421	52.111	51.831	52.673	-0.26903					54	21	4	0	0	0	0.45367	1	5442	5442		93.195	10.445	1	2557800			89783	7631	62456	62558	99931	99931					-0.027649542586459575
WSAVVEERDA	10	Unmodified	_WSAVVEERDA_					0	0	0		nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	nc|ENSG00000166947|P16452-3|EPB42	nc|ENSG00000166947|P16452-3|EPB42	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.2828369140625	2	581.280377	1160.5462	-0.55479	-0.00032249	0.052098	3.0283E-05	-0.50269	-0.0002922	581.2803643771553	52.201	0.81509	52.017	51.741	52.557	-0.18404					52	20	4	0	0	0	0.52765	1	5425	5425		85.161	6.897	1	2962000			89784	7631	62456	62558	99932	99932					-0.027649542586459575
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.2689819335938	2	577.269281	1152.52401	-0.099437	-5.7402E-05	-0.12083	-6.9754E-05	-0.22027	-0.00012716	577.269155175741	63.645	1.5191	63.417	63.095	64.614	-0.22773					98	38	4	0	0	0	0.15889	3	7189	7189;7202;7214		97.473	26.177	1	8629400			89785	3489	62457	62559	99933;99934;99935	99933					-0.04615133936431448
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.268798828125	2	577.269281	1152.52401	-0.51875	-0.00029946	0.2732	0.00015771	-0.24556	-0.00014175	577.2693596417547	63.592	1.9217	63.4	63.029	64.951	-0.19243					119	48	4	0	0	0	0.15889	4	7182	7182;7193;7205;7217		97.473	26.177	1	9493400			89786	3489	62457	62559	99936;99937;99938;99939	99936					-0.04615133936431448
WSDGHLIYY	9	Unmodified	_WSDGHLIYY_					0	0	0		nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.2692260742188	2	577.269281	1152.52401	-0.011353	-6.5538E-06	-0.35411	-0.00020441	-0.36546	-0.00021097	577.2690365532111	63.719	1.7363	63.461	63.162	64.898	-0.25824					105	44	3	0	0	0	0.20304	1	7224	7224		88.643	17.347	1	9388000			89787	3489	62457	62559	99940	99940					-0.04615133936431448
WSDQIDVT	8	Unmodified	_WSDQIDVT_					0	0	0		RRH|p.D231Y|1|0.23|ENSG00000180245|chr4:109837576-109837576|G/T|missense_variant;ENSG00000180245|ENST00000317735|RRH	RRH|p.D231Y|1|0.23|ENSG00000180245|chr4:109837576-109837576|G/T|missense_variant	RRH|p.D231Y|1|0.23|ENSG00000180245|chr4:109837576-109837576|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	481.2459716796875	2	482.224539	962.434526	-0.040933	-1.9739E-05	0.94729	0.00045681	0.90636	0.00043707	482.2248113266513	60.299	0.7408	60.299	60.066	60.807	0					30	19	2	0	0	0	0.027866	1	6962	6962		44.117	21.074	1	177700			89788	8966	62458	62560	99941	99941					-0.048193886158060195
WSETEQSEEV	10	Unmodified	_WSETEQSEEV_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	408.5064392089844	3	408.506935	1222.49898	1.2886	0.0005264	-2.5278	-0.0010326	-1.2392	-0.00050621	408.5058754136503	19.63	0.83271	19.43	19.156	19.988	-0.2001					30	16	3	0	0	0	1.1333	1	441	441		28.081	0.43757	1	688270	+		89789	29105	62459	62561	99942	99942					-0.10337278320344012
WSEYLIEP	8	Unmodified	_WSEYLIEP_					0	0	0		ENST00000311893.13_1_12:108962937-108963123:+|nuORF	ENST00000311893.13_1_12:108962937-108963123:+|nuORF	ENST00000311893.13_1_12:108962937-108963123:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.8277587890625	2	518.752933	1035.49131	-0.23394	-0.00012135	-3.0033	-0.001558	-3.2372	-0.0016793	518.7509116389969	34.859	0.79316	34.643	34.307	35.1	-0.21556					36	19	4	0	0	0	0.027866	1	2617	2617		33.516	6.7195	1	401880			89790	12084	62460	62562	99943	99943					-0.025013410592919172
WSGGKKEDHSL	11	Unmodified	_WSGGKKEDHSL_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	414.2406311035156	3	415.207043	1242.5993	0.24229	0.0001006	-1.8043	-0.00074917	-1.5621	-0.00064857	415.2060539100661	33.974	0.66001	33.97	33.715	34.375	-0.0045624					40	16	4	0	0	0	0.024738	1	2499	2499		52.167	27.891	1	435140	+		89791	19872	62461	62563	99944	99944					-0.012295764759983285
WSGVLDLIL	9	Unmodified	_WSGVLDLIL_					0	0	0		nc|ENSG00000138463|Q96SL1-2|SLC49A4;ENSG00000138463|ENST00000261038|SLC49A4;ENST00000477647.1_1_3:122514002-122598222:+|nuORF	nc|ENSG00000138463|Q96SL1-2|SLC49A4	nc|ENSG00000138463|Q96SL1-2|SLC49A4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.29449462890625	2	508.294768	1014.57498	-0.23487	-0.00011938	-0.18904	-9.609E-05	-0.42392	-0.00021547	508.2946193496138	94.493	1.0049	94.493	94.088	95.093	0					76	23	4	0	0	0	0.55828	1	12016	12016		55.504	2.1528	1	3396100			89792	5247	62462	62564	99945	99945					0.06827815108431423
WSHLESIFI	9	Unmodified	_WSHLESIFI_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.V2822Pfs*13|1|0.1|ENSG00000187775|chr17:78475312-78475325|GTGATCTGAAACAC/-|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.76708984375	2	566.295299	1130.57605	-0.37388	-0.00021173	1.3627	0.00077168	0.9888	0.00055995	566.2967391609466	39.585	0.19562	39.362	39.186	39.382	-0.22311					6	4	2	0	0	0	0.024523	1	3337	3337		21.96	1.9631	1	67249			89793	9658	62463	62565	99946	99946					0.01598029477304408
WSHTKAGD	8	Unmodified	_WSHTKAGD_					0	0	0			REV__nc|ENSG00000155719|Q7RTW8-3|OTOA	REV__nc|ENSG00000155719|Q7RTW8-3|OTOA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	450.2873229980469	2	451.211766	900.40898	0.55117	0.00024869	0.064533	2.9118E-05	0.6157	0.00027781	451.21168710353345	37.111	0.53136	36.918	36.697	37.229	-0.193					21	13	2	0	0	0	0.027866	1	2956	2956		40.573	1.7665	1	208500	+		89794	25021	62464	62566	99947	99947					-0.045208183475665464
WSKFCRWFQD	10	Unmodified	_WSKFCRWFQD_					0	0	0		nc|ENSG00000165125|Q9H1D0-2|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	nc|ENSG00000165125|Q9H1D0-2|TRPV6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.2162780761719	3	468.216885	1401.62883	-0.92829	-0.00043464	-0.34354	-0.00016085	-1.2718	-0.0005955	468.21667621114074	25.733	0.66045	25.562	25.282	25.943	-0.17151					44	16	4	0	0	0	1.1165	1	1225	1225		19.263	1.4295	1	765680			89795	18462	62465	62567	99948	99948					-0.05592335731512321
WSLQLILV	8	Unmodified	_WSLQLILV_					0	0	0		ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	486.29736328125	2	486.299853	970.585153	-0.31641	-0.00015387	-3.8947	-0.001894	-4.2111	-0.0020478	486.2978378289203	67.395	0.72693	67.419	66.985	67.712	0.023903					52	17	5	0	0	0	0.74904	1	7959	7959		63.306	3.0123	1	2219100			89796	7949	62466	62568	99949	99949					0.09868422833665136
WSNKKQHLTT	10	Unmodified	_WSNKKQHLTT_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	414.2896423339844	3	414.891166	1241.65167	-0.1103	-4.5763E-05	-0.96022	-0.00039839	-1.0705	-0.00044415	415.2253452358329	34.422	0.15666	34.198	34.142	34.299	-0.22412					5	3	2	0	0	0	0.03519	1	2534	2534		29.551	22.839	1	55965			89797	3308	62467	62569	99950	99950					0.0405100665759619
WSPFLGLLSGT	11	Unmodified	_WSPFLGLLSGT_					0	0	0			REV__nc|ENSG00000213347|Q9BW11-4|MXD3	REV__nc|ENSG00000213347|Q9BW11-4|MXD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.316232	1176.61791	-0.61722	-0.00036374	-0.47964	-0.00028266	-1.0969	-0.00064639	589.3151828968192	93.394	0.48127	93.25	92.958	93.439	-0.1441					22	10	3	0	0	0	0.024762	1	11472	11472		54.776	28.083	1	84016	+		89798	37125	62468	62570	99951	99951					0.03666585165842662
WSPKRKSV	8	Unmodified	_WSPKRKSV_					0	0	0		chr1:18917042-18917797|110|11.13|0.0|20.09|-|1|IFFO2,None|1	chr1:18917042-18917797|110|11.13|0.0|20.09|-|1|IFFO2,None|1	chr1:18917042-18917797|110|11.13|0.0|20.09|-|1|IFFO2,None|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.2652282714844	2	494.290351	986.566149	-0.17672	-8.7352E-05	-1.7292	-0.00085473	-1.9059	-0.00094208	494.2896976329503	74.722	0.45554	74.446	74.265	74.72	-0.27573					17	10	2	0	0	0	0.027866	1	8817	8817		73.975	0	1	119270			89799	278	62469	62571	99952	99952					0.07232886262613647
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	456.86370849609375	3	456.863388	1367.56833	-0.69961	-0.00031963	0.31547	0.00014413	-0.38414	-0.0001755	456.8635151754731	38.315	1.5552	38.136	37.809	39.365	-0.17929					142	43	5	0	0	0	0.811	4	3144	3144;3155;3169;3188		59.931	28.297	1	8851000			89800	6327	62470	62572	99953;99954;99955;99956	99953					-0.10074729790244419
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	456.8636169433594	3	456.863388	1367.56833	-0.82297	-0.00037598	0.6337	0.00028952	-0.18926	-8.6467E-05	456.86362517855497	38.208	1.9376	37.986	37.686	39.624	-0.22149					159	52	5	0	0	0	0.99657	3	3137	3126;3137;3150		46.457	16.906	1	9000200			89801	6327	62470	62572	99957;99958;99959	99958					-0.10074729790244419
WSQHYHQGYY	10	Unmodified	_WSQHYHQGYY_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.8633117675781	3	456.863388	1367.56833	-0.42178	-0.0001927	0.10172	4.6473E-05	-0.32006	-0.00014622	456.8633764898034	38.278	2.0306	38.059	37.792	39.822	-0.21848					161	55	5	0	0	0	0.78438	4	3133	3133;3144;3157;3169		61.691	29.657	1	7971600			89802	6327	62470	62572	99960;99961;99962;99963	99960					-0.10074729790244419
WSRGASLSV	9	Unmodified	_WSRGASLSV_					0	0	0			REV__ENSG00000130997|ENST00000511885|POLN	REV__ENSG00000130997|ENST00000511885|POLN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.7574157714844	2	481.756341	961.498129	0.17044	8.2111E-05	0.041765	2.012E-05	0.2122	0.00010223	481.756103268464	52.764	0.67327	52.505	52.249	52.922	-0.25838					45	16	4	0	0	0	0.15029	1	5485	5485		99.375	6.2317	1	1128100	+		89803	23174	62471	62573	99964	99964					0.01584016611957395
WSRRFSSV	8	Unmodified	_WSRRFSSV_					0	0	0			REV__ANXA2R|p.E31Ffs*24|1|0.26|ENSG00000177721|chr5:43039957-43039958|-/GAAC|frameshift_variant	REV__ANXA2R|p.E31Ffs*24|1|0.26|ENSG00000177721|chr5:43039957-43039958|-/GAAC|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	513.2852172851562	2	512.769783	1023.52501	-0.20707	-0.00010618	-1.723	-0.00088349	-1.93	-0.00098967	513.270593798309	61.962	0.62842	61.748	61.501	62.13	-0.21375					23	15	2	0	0	0	0.027866	1	6993	6993		47.916	12.715	1	169490	+		89804	19149	62472	62574	99965	99965					0.014191252231398721
WSSALQAKS	9	Unmodified	_WSSALQAKS_					0	0	0		USP13-PEX5L|1|fusion;nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	USP13-PEX5L|1|fusion	USP13-PEX5L|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2610168457031	2	489.256174	976.497795	-0.61977	-0.00030322	-0.21676	-0.00010605	-0.83653	-0.00040928	489.25521820564387	69.88	0.60732	69.893	69.385	69.993	0.012421					21	14	2	0	0	0	0.024427	1	8283	8283		34.173	16.808	1	197910			89805	38135	62473	62575	99966	99966					0.00860596892096055
WSSNRLLY	8	Unmodified	_WSSNRLLY_					0	0	0		ENSG00000108684|ENST00000225823|ASIC2	ENSG00000108684|ENST00000225823|ASIC2	ENSG00000108684|ENST00000225823|ASIC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.7715454101562	2	519.771991	1037.52943	-0.39077	-0.00020311	-0.85884	-0.0004464	-1.2496	-0.00064951	519.7713125091302	73.574	0.88568	73.297	72.799	73.685	-0.2769					50	21	3	0	0	0	0.6536	1	8646	8646		71.296	15.791	1	1383200			89806	2925	62474	62576	99967	99967					0.012165896460601289
WSTIYLGPI	9	Unmodified	_WSTIYLGPI_					0	0	0			REV__ENST00000395879.5_2_7:43680244-43687232:-|nuORF	REV__ENST00000395879.5_2_7:43680244-43687232:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.8132934570312	2	525.286943	1048.55933	0.45105	0.00023693	1.9885	0.0010445	2.4396	0.0012815	525.7887251995223	85.61	1.1094	85.472	85.07	86.18	-0.13752					54	25	3	0	0	0	0.024325	1	10384	10384		40.573	0	1	917760	+		89807	31719	62475	62577	99968	99968					0.03699528591369017
WSTIYLGPI	9	Unmodified	_WSTIYLGPI_					0	0	0			REV__ENST00000395879.5_2_7:43680244-43687232:-|nuORF	REV__ENST00000395879.5_2_7:43680244-43687232:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	525.286943	1048.55933	0.2603	0.00013673	-1.3473	-0.0007077	-1.087	-0.00057097	525.2852130702111	85.458	0.37875	85.458	85.206	85.584	0	-0.0068845	-0.0030357	NaN	40.573	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276970	+		89808	31719	62475	62577							0.03699528591369017
WSVEYVGIY	9	Unmodified	_WSVEYVGIY_					0	0	0		ENST00000266673.9_1_12:72080327-72080372:+|nuORF	ENST00000266673.9_1_12:72080327-72080372:+|nuORF	ENST00000266673.9_1_12:72080327-72080372:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.2950439453125	2	558.274032	1114.53351	0.43988	0.00024558	2.4006	0.0013402	2.8405	0.0015858	558.2766050085856	50.883	0.56454	50.771	50.525	51.09	-0.11163					34	14	3	0	0	0	0.024466	1	5173	5173		18.324	1.8513	1	632230			89809	11610	62476	62578	99969	99969					-0.01917365650888314
WSVEYVGIY	9	Unmodified	_WSVEYVGIY_					0	0	0		ENST00000266673.9_1_12:72080327-72080372:+|nuORF	ENST00000266673.9_1_12:72080327-72080372:+|nuORF	ENST00000266673.9_1_12:72080327-72080372:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	558.274032	1114.53351	0.17733	9.8998E-05	3.2132	0.0017938	3.3905	0.0018928	558.2765488619198	51.133	0.57176	50.856	50.702	51.274	-0.27643	0.054113	-1.6167E-05	NaN	50.025	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	730480			89810	11610	62476	62578							-0.01917365650888314
WSVEYVGIY	9	Unmodified	_WSVEYVGIY_					0	0	0		ENST00000266673.9_1_12:72080327-72080372:+|nuORF	ENST00000266673.9_1_12:72080327-72080372:+|nuORF	ENST00000266673.9_1_12:72080327-72080372:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.274032	1114.53351	0.47671	0.00026614	3.6082	0.0020144	4.0849	0.0022805	558.2766608060299	50.959	0.45483	50.779	50.647	51.102	-0.18071	-0.023479	0.00042494	NaN	50.025	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	861980			89811	11610	62476	62578							-0.01917365650888314
WSVLVVDEA	9	Unmodified	_WSVLVVDEA_					0	0	0		nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L;ENST00000492728.1_1_1:146714404-146731617:+|nuORF	nc|ENSG00000131778|Q86WJ1-4|CHD1L	nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.267333984375	2	509.266207	1016.51786	-0.62628	-0.00031894	3.6532	0.0018605	3.0269	0.0015415	509.26786794442546	62.245	0.62704	62.019	61.65	62.277	-0.22663					59	17	6	0	0	0	0.70186	1	7231	7231		45.952	3.5558	1	5926600			89812	4549	62477	62579	99970	99970					0.01026347832043939
WSVNLGGVTW	10	Unmodified	_WSVNLGGVTW_					0	0	0			REV__ENST00000454079.5_1_3:50099151-50099352:+|nuORF	REV__ENST00000454079.5_1_3:50099151-50099352:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.7827758789062	2	559.785099	1117.55564	-0.3807	-0.00021311	-3.7479	-0.002098	-4.1286	-0.0023111	559.783001165191	30.938	1.038	30.786	30.341	31.379	-0.15231					82	25	4	0	0	0	0.67706	1	2014	2014		68.787	1.2932	1	9476600	+		89813	32756	62478	62580	99971	99971					0.0015685881753597641
WSVPAQAPRTL	11	Unmodified	_WSVPAQAPRTL_					0	0	0			REV__ENST00000585325.5_1_19:11557144-11558756:+|nuORF	REV__ENST00000585325.5_1_19:11557144-11558756:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.24365234375	3	409.227779	1224.66151	-0.53421	-0.00021861	0.32053	0.00013117	-0.21367	-8.7441E-05	409.22791310583733	44.393	0.53233	44.149	43.867	44.4	-0.2444					29	14	3	0	0	0	0.024795	1	4153	4153		52.167	0	1	381740	+		89814	35569	62479	62581	99972	99972					0.058161946629979866
WTDNRELTY	9	Unmodified	_WTDNRELTY_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.2811279296875	2	599.280377	1196.5462	-0.61254	-0.00036708	1.8025	0.0010802	1.1899	0.00071311	599.281721636745	49.348	0.64706	49.069	48.825	49.472	-0.27977					36	16	3	0	0	0	0.28753	1	4956	4956		77.318	4.4383	1	2192000			89815	1169	62480	62582	99973	99973					-0.044209542586713724
WTDNRELTY	9	Unmodified	_WTDNRELTY_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	599.280377	1196.5462	-1.0592	-0.00063478	2.2207	0.0013308	1.1614	0.00069602	599.2818405189869	49.009	0.90654	48.908	48.471	49.377	-0.1008	-0.094697	0.00018998	NaN	77.318	78	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2308800			89816	1169	62480	62582							-0.044209542586713724
WTDNRELTY	9	Unmodified	_WTDNRELTY_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	599.280377	1196.5462	-0.2718	-0.00016288	1.7974	0.0010771	1.5256	0.00091426	599.2818138617214	49.213	0.79156	49.031	48.702	49.494	-0.18206	0.0285	-0.00031732	NaN	77.318	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2269400			89817	1169	62480	62582							-0.044209542586713724
WTDRATSVV	9	Unmodified	_WTDRATSVV_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	518.296630859375	2	517.766906	1033.51926	0.53778	0.00027845	3.156	0.0016341	3.6938	0.0019125	517.7683907229735	78.268	0.89793	78.037	77.709	78.607	-0.23141					47	20	3	0	0	0	0.024288	1	9390	9390		62.107	26.955	1	786540	+		89818	20911	62481	62583	99974	99974					0.0038398192079966975
WTDRATSVV	9	Unmodified	_WTDRATSVV_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	517.766906	1033.51926	0.61958	0.0003208	3.3541	0.0017366	3.9736	0.0020574	517.7683909224255	78.325	1.3258	78.133	77.683	79.009	-0.1921	0.029023	-0.00034641	NaN	62.107	64	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1078200	+		89819	20911	62481	62583							0.0038398192079966975
WTDRATSVV	9	Unmodified	_WTDRATSVV_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	517.766906	1033.51926	-0.7763	-0.00040194	4.8174	0.0024943	4.0411	0.0020923	517.769159324857	78.26	1.0792	78.276	77.905	78.985	0.015907	0.17214	0.0011689	NaN	62.107	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1093900	+		89820	20911	62481	62583							0.0038398192079966975
WTDVVEDKI	9	Unmodified	_WTDVVEDKI_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.F4098Lfs*29|1|0.65|ENSG00000123384|chr12:57209720-57209720|C/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	552.7828369140625	2	552.782222	1103.54989	-0.33248	-0.00018379	1.2957	0.00071621	0.96317	0.00053242	552.782995549161	41.293	0.68348	41.157	40.869	41.552	-0.13553					48	17	4	0	0	0	0.92825	1	3650	3650		30.504	4.9296	1	2098100			89821	3974	62482	62584	99975	99975					0.0022571551519376953
WTEMNTIVY	9	Unmodified	_WTEMNTIVY_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;CHD8|p.L2053Sfs*14|1|0.21|ENSG00000100888|chr14:21393639-21393640|-/G|frameshift_variant	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	578.7705688476562	2	578.7708	1155.52705	0.045093	2.6099E-05	0.40678	0.00023543	0.45188	0.00026153	578.7709505089189	74.486	0.80497	74.21	73.958	74.763	-0.27573					41	18	3	0	0	0	0.2508	1	8788	8788		82.241	2.7895	1	1054800			89822	2254	62483	62585	99976	99976					-0.044496268739294464
WTLGRADPL	9	Unmodified	_WTLGRADPL_					0	0	0		ENST00000481499.5_1_6:43028115-43028307:+|nuORF	ENST00000481499.5_1_6:43028115-43028307:+|nuORF	ENST00000481499.5_1_6:43028115-43028307:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	514.839111328125	2	514.779816	1027.54508	0.13244	6.8175E-05	1.179	0.00060692	1.3114	0.0006751	514.7798580452201	57.572	0.52247	57.382	57.076	57.599	-0.19017					19	13	2	0	0	0	0.023635	1	6250	6250		56.721	0	1	137620			89823	15231	62484	62586	99977	99977					0.03240876163090434
WTNHEESFGK	10	Unmodified	_WTNHEESFGK_					0	0	0			REV__ENSG00000094916|ENST00000209875|CBX5	REV__ENSG00000094916|ENST00000209875|CBX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	412.18719482421875	3	412.18776	1233.54145	-0.56341	-0.00023223	0.41151	0.00016962	-0.15189	-6.2609E-05	412.18788148691146	36.024	1.5204	35.819	35.506	37.027	-0.20518					108	40	4	0	0	0	1.0074	1	2788	2788		45.022	0.38276	1	10327000	+		89824	20953	62485	62587	99978	99978					-0.06597838401444278
WTPARGVSF	9	Unmodified	_WTPARGVSF_					0	0	0		ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1	ENSG00000248385|ENST00000432826|TARM1	ENSG00000248385|ENST00000432826|TARM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.7646179199219	2	510.766709	1019.51886	-0.88574	-0.0004524	-3.8423	-0.0019625	-4.728	-0.0024149	510.76480444062497	25.678	1.3301	25.678	25.285	26.615	0					83	31	5	0	0	0	0.55828	1	1227	1227		55.504	3.205	1	7841600			89825	10832	62486	62588	99979	99979					0.009886069916205997
WTPDAHRF	8	Unmodified	_WTPDAHRF_					0	0	0			REV__ENSG00000129654|ENST00000322957|FOXJ1	REV__ENSG00000129654|ENST00000322957|FOXJ1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	515.3114624023438	2	515.248683	1028.48281	-0.090973	-4.6874E-05	4.1273	0.0021266	4.0363	0.0020797	515.2514026271052	20.046	0.19117	19.878	19.718	19.909	-0.16774					7	3	3	0	0	0	0.027866	1	496	496		73.975	9.7675	1	14625	+		89826	23056	62487	62589	99980	99980					-0.030288501852510308
WTPGRLAPL	9	Unmodified	_WTPGRLAPL_					0	0	0			REV__ENST00000359534.3_1_6:39196939-39197125:-|nuORF	REV__ENST00000359534.3_1_6:39196939-39197125:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	505.32379150390625	2	505.792727	1009.5709	-0.028126	-1.4226E-05	0.16261	8.2246E-05	0.13448	6.802E-05	505.79211359088765	78.951	0.20988	78.969	78.818	79.028	0.018677					7	4	2	0	0	0	0.023635	1	9712	9712		87.754	22.289	1	47018	+		89827	30883	62488	62590	99981	99981					0.06649770405351774
WTSKSSLLQVL	11	Unmodified	_WTSKSSLLQVL_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	631.3597412109375	2	631.36117	1260.70779	0.065171	4.1146E-05	0.96906	0.00061182	1.0342	0.00065297	631.3615108519828	66.562	0.83701	66.562	66.368	67.205	0					44	22	3	0	0	0	0.96599	1	7917	7917		44.377	2.9506	1	1435000			89828	8599	62489	62591	99982	99982					0.08786214774431755
WTTNREYRDLW	11	Unmodified	_WTTNREYRDLW_					0	0	0			REV__ENSG00000212128|ENST00000390677|TAS2R13	REV__ENSG00000212128|ENST00000390677|TAS2R13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	514.7960205078125	3	513.916152	1538.72663	-0.055369	-2.8455E-05	-2.5846	-0.0013282	-2.6399	-0.0013567	513.9144727366671	24.085	1.1654	23.87	23.384	24.55	-0.2151					53	26	3	0	0	0	0.024872	1	991	991		15.921	1.8346	1	83029	+		89829	28718	62490	62592	99983	99983					-0.021188556018159943
WVAASRSP	8	Unmodified	_WVAASRSP_					0	0	0			REV__ENST00000463287.1_1_22:38508170-38508779:-|nuORF	REV__ENST00000463287.1_1_22:38508170-38508779:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	436.2475891113281	2	437.232502	872.450451	-0.57183	-0.00025002	4.0729	0.0017808	3.5011	0.0015308	437.2341659651158	34.882	0.45579	34.86	34.593	35.049	-0.021767					19	11	2	0	0	0	0.027866	1	2653	2653		62.978	22.406	1	62106	+		89830	32929	62491	62593	99984	99984					0.009123624117592044
WVDEERASL	9	Unmodified	_WVDEERASL_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	552.8292846679688	2	552.769645	1103.52474	0.27429	0.00015162	-0.76424	-0.00042245	-0.48995	-0.00027083	552.7692254251765	49.209	0.53805	49.209	48.899	49.437	0					39	14	4	0	0	0	0.024399	1	5062	5062		61.691	23.88	1	1672600			89831	5985	62492	62594	99985	99985					-0.022883392873836783
WVDEERASL	9	Unmodified	_WVDEERASL_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	552.8295288085938	2	552.769645	1103.52474	-1.4792	-0.00081765	0.97626	0.00053965	-0.50292	-0.000278	552.770197062075	49.116	0.47831	49.19	48.95	49.428	0.074192					38	12	4	0	0	0	0.024399	1	4980	4980		53.089	8.7118	1	1640400			89832	5985	62492	62594	99986	99986					-0.022883392873836783
WVDETLSSV	9	Unmodified	_WVDETLSSV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.2535400390625	2	518.253297	1034.49204	-0.5818	-0.00030152	0.30355	0.00015732	-0.27825	-0.0001442	518.2534685190175	68.54	1.3886	68.279	67.654	69.043	-0.26166					78	33	4	0	0	0	0.074956	2	7913	7913;7929		119.56	13.142	1	3225200			89833	2577	62493	62595	99987;99988	99987					-0.023825464102401384
WVDETLSSV	9	Unmodified	_WVDETLSSV_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2536010742188	2	518.253297	1034.49204	0.53064	0.00027501	-0.63619	-0.00032971	-0.10555	-5.4703E-05	518.2529102791366	68.489	1.7062	68.246	67.951	69.657	-0.24277					65	41	2	0	0	0	0.049585	2	7919	7919;7930		128.86	36.67	1	3889400			89834	2577	62493	62595	99989;99990	99989					-0.023825464102401384
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.2612915039062	2	579.261122	1156.50769	-0.089371	-5.1769E-05	-0.67171	-0.00038909	-0.76108	-0.00044086	579.2610469048324	75.329	1.8214	75.056	74.641	76.462	-0.27266					58	44	2	0	0	0	0.014907	4	8899	8887;8899;8911;8924		162.31	93.519	1	9797000			89835	4719	62494	62596	99991;99992;99993;99994	99992					-0.06430259893204493
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.26123046875	2	579.261122	1156.50769	-0.8804	-0.00050998	-0.35463	-0.00020542	-1.235	-0.0007154	579.2614685285647	75.325	1.3621	75.066	74.615	75.977	-0.25866					64	33	4	0	0	0	0.014907	4	8903	8903;8915;8927;8940		162.31	90.428	1	11715000			89836	4719	62494	62596	99995;99996;99997;99998	99995					-0.06430259893204493
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.26123046875	2	579.261122	1156.50769	-0.16735	-9.6938E-05	-1.0705	-0.00062011	-1.2379	-0.00071704	579.2609926929639	75.155	1.6552	74.979	74.604	76.259	-0.17548					79	40	4	0	0	0	0.013805	5	8864	8864;8876;8888;8901;8913		193.98	109.06	1	11012000			89837	4719	62494	62596	99999;100000;100001;100002;100003	99999					-0.06430259893204493
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	579.261122	1156.50769	-1.8761	-0.0010867	7.4382	0.0043086	5.5621	0.0032219	579.2650924467872	75.167	0.82314	75.167	74.835	75.659	0	0.052508	0.0053275	NaN	162.31	34	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504780			89838	4719	62494	62596							-0.06430259893204493
WVDPYEVSY	9	Unmodified	_WVDPYEVSY_					0	0	0		ENSG00000133639|ENST00000256015|BTG1;ENSG00000159388|ENST00000290551|BTG2	ENSG00000133639|ENST00000256015|BTG1	ENSG00000133639|ENST00000256015|BTG1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	579.261122	1156.50769	-0.73122	-0.00042357	6.1604	0.0035685	5.4292	0.0031449	579.2643047665297	75.418	0.73869	75.173	74.878	75.617	-0.24455	0.058229	0.0038472	NaN	162.31	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642490			89839	4719	62494	62596							-0.06430259893204493
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.7747192382812	2	569.774396	1137.53424	-0.026055	-1.4845E-05	0.35421	0.00020182	0.32816	0.00018698	569.7746014433953	77.941	1.8668	77.679	77.313	79.179	-0.26202					82	43	5	0	0	0	0.043667	3	9283	9283;9295;9307		131.03	48.726	1	9022800			89840	3537	62495	62597	100004;100005;100006	100004					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.7744140625	2	569.774396	1137.53424	0.82125	0.00046793	-0.47019	-0.0002679	0.35106	0.00020002	569.7741095752219	77.875	1.7748	77.632	77.32	79.095	-0.24232					78	41	5	0	0	0	0.10174	2	9304	9292;9304		110.12	49.148	1	9792300			89841	3537	62495	62597	100007;100008	100008					-0.029025710018458994
WVDSDQLLY	9	Unmodified	_WVDSDQLLY_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7745361328125	2	569.774396	1137.53424	-0.1028	-5.8573E-05	0.28684	0.00016344	0.18404	0.00010486	569.7745279378651	77.793	1.7871	77.632	77.311	79.098	-0.16196					81	41	5	0	0	0	0.067814	2	9265	9265;9277		122.18	45.402	1	8885900			89842	3537	62495	62597	100009;100010	100009					-0.029025710018458994
WVDVQPAI	8	Unmodified	_WVDVQPAI_					0	0	0		nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	nc|ENSG00000148219|O75129-2|ASTN2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	464.27874755859375	2	464.25036	926.486168	-0.55914	-0.00025958	-3.0557	-0.0014186	-3.6149	-0.0016782	464.2484922431773	81.369	0.49115	81.369	81.097	81.589	0					18	11	2	0	0	0	0.027866	1	10107	10107		76.847	5.5509	1	87215			89843	6011	62496	62598	100011	100011					0.01998399868762135
WVFAIAAM	8	Unmodified	_WVFAIAAM_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	454.7409973144531	2	454.738574	907.462595	0.14095	6.4097E-05	3.3789	0.0015365	3.5199	0.0016006	454.74000942355605	110.55	0.49195	110.43	110.14	110.63	-0.12524					32	15	3	0	0	0	1.0574	1	13587	13587		16.705	1.0632	1	58158	+		89844	20707	62497	62599	100012	100012					0.005162628305811268
WVGLAHSVL	9	Unmodified	_WVGLAHSVL_					0	0	0		ENST00000574957.1_1_16:3075999-3076221:+|nuORF	ENST00000574957.1_1_16:3075999-3076221:+|nuORF	ENST00000574957.1_1_16:3075999-3076221:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.81280517578125	2	491.279452	980.544351	0.055245	2.7141E-05	-2.3607	-0.0011598	-2.3055	-0.0011326	491.2792432399957	101.88	0.39618	101.88	101.58	101.97	-0.0054474					14	8	2	0	0	0	0.024294	1	12983	12983		45.952	0	1	80680			89845	17092	62498	62600	100013	100013					0.053300815140460145
WVHACSPCLCF	11	Unmodified	_WVHACSPCLCF_					0	0	0		ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.2660522460938	2	633.266847	1264.51914	-0.50951	-0.00032265	-0.92258	-0.00058424	-1.4321	-0.00090689	633.2664544827835	31.64	1.0682	31.709	31.366	32.434	0.068962					78	26	5	0	0	0	0.99689	1	2106	2106		35.618	24.107	1	4110000			89846	14951	62499	62601	100014	100014					-0.10253800666714596
WVIGFSGYVY	10	Unmodified	_WVIGFSGYVY_					0	0	0			REV__SLC17A6|p.M254I|1|0.22|ENSG00000091664|chr11:22365560-22365560|G/T|missense_variant	REV__SLC17A6|p.M254I|1|0.22|ENSG00000091664|chr11:22365560-22365560|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	595.7960205078125	2	595.797675	1189.5808	-1.5521	-0.00092471	-1.4342	-0.0008545	-2.9863	-0.0017792	595.7967172280273	60.898	0.80122	60.722	60.403	61.205	-0.1761					62	19	4	0	0	0	0.9856	1	6798	6798		47.916	9.1095	1	4448700	+		89847	37493	62500	62602	100015	100015					-0.0064108637989193085
WVKEKVVAL	9	Unmodified	_WVKEKVVAL_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	536.3314208984375	2	536.331685	1070.64882	-0.23524	-0.00012617	-0.66088	-0.00035445	-0.89612	-0.00048062	536.331325088765	46.588	2.2888	46.491	46.259	48.548	-0.096649					157	62	4	0	0	0	0.053401	8	4489	4489;4499;4511;4522;4534;4548;4561;4573		127.46	50.688	1	70788000			89848	849	62501	62603	100016;100017;100018;100019;100020;100021;100022;100023	100016					0.11631783270763663
WVKEKVVAL	9	Unmodified	_WVKEKVVAL_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	536.3316650390625	2	536.331685	1070.64882	-0.36036	-0.00019327	-0.72621	-0.00038949	-1.0866	-0.00058276	536.3313130249545	46.879	2.8696	46.61	46.341	49.211	-0.26939					182	78	4	0	0	0	0.053401	8	4576	4517;4528;4540;4552;4564;4576;4588;4609		127.46	50.688	1	77446000			89849	849	62501	62603	100024;100025;100026;100027;100028;100029;100030;100031	100029					0.11631783270763663
WVKEKVVAL	9	Unmodified	_WVKEKVVAL_					0	0	0		nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32	nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-7|IL32	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.3311767578125	2	536.331685	1070.64882	-1.0626	-0.00056989	-0.020716	-1.1111E-05	-1.0833	-0.000581	536.3316636332124	46.722	2.3812	46.528	46.238	48.619	-0.19387					171	65	4	0	0	0	0.053401	8	4515	4491;4503;4515;4527;4540;4553;4564;4579		127.46	50.144	1	83607000			89850	849	62501	62603	100032;100033;100034;100035;100036;100037;100038;100039	100034					0.11631783270763663
WVKGKRRL	8	Unmodified	_WVKGKRRL_					0	0	0			REV__ENST00000506004.5_1_5:141348908-141349118:+|nuORF	REV__ENST00000506004.5_1_5:141348908-141349118:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.8126220703125	2	521.83526	1041.65597	0.018662	9.7383E-06	-1.5746	-0.00082167	-1.5559	-0.00081193	521.8343102020198	23.271	0.45287	23.069	22.826	23.279	-0.20193					18	9	3	0	0	0	0.027866	1	878	878		23.042	7.4007	1	136780	+		89851	34019	62502	62604	100040	100040					0.13680560661828167
WVKVYRGGAS	10	Unmodified	_WVKVYRGGAS_					0	0	0			REV__ENSG00000164338|ENST00000296792|UTP15	REV__ENSG00000164338|ENST00000296792|UTP15	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	561.8108520507812	2	561.806365	1121.59818	3.4421	0.0019338	2.9208	0.0016409	6.3629	0.0035747	561.8079529231576	18.644	0.39212	18.708	18.55	18.942	0.063307					16	7	3	0	0	0	1.118	1	282	282		30.318	2.4355	1	70442	+		89852	25741	62503	62605	100041	100041					0.042242539457674866
WVLFILDL	8	Unmodified	_WVLFILDL_					0	0	0		ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	MSMS	OPSCC_39_ClassI_Rep-2	2	509.8044128417969	2	509.802229	1017.5899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.185	1	83.095	82.595	83.595	-0.090454								0	0	0	0.78881	1	10362	10362		35.201	2.4502	1				89853	16327	62504	62606	100042	100042					0.08181306976428004
WVLFILDL	8	Unmodified	_WVLFILDL_					0	0	0		ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.8037414550781	2	509.802229	1017.5899	0.32253	0.00016443	2.1919	0.0011175	2.5145	0.0012819	509.8032631513967	83.402	2.5273	83.233	81.826	84.353	-0.16915					132	58	3	0	0	0	1.0133	1	10050	10050		35.201	4.6971	1	1049700			89854	16327	62504	62606	100043	100043					0.08181306976428004
WVMSLSLL	8	Unmodified	_WVMSLSLL_					0	0	0			REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	474.2381896972656	2	474.764789	947.515025	1.2533	0.00059502	-1.1651	-0.00055313	0.08823	4.1889E-05	474.7641419710173	72.286	1.1354	72.286	71.604	72.74	0					50	28	2	0	0	0	0.027866	1	8808	8808		55.504	20.303	1	353900	+		89855	28939	62505	62607	100044	100044					0.039168011735455366
WVMSLSLL	8	Unmodified	_WVMSLSLL_					0	0	0			REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	474.764789	947.515025	0.24276	0.00011525	-0.034021	-1.6152E-05	0.20874	9.9102E-05	474.76461174883656	72.49	1.2618	72.213	71.664	72.926	-0.2769	0.004207	0.0002262	NaN	55.504	74	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453520	+		89856	28939	62505	62607							0.039168011735455366
WVMSLSLL	8	Unmodified	_WVMSLSLL_					0	0	0			REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	474.764789	947.515025	0.27405	0.00013011	-0.27045	-0.0001284	0.003602	1.7101E-06	474.7646068680635	72.462	1.3821	72.198	71.635	73.017	-0.26479	-0.011106	1.7035E-06	NaN	55.504	86	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479960	+		89857	28939	62505	62607							0.039168011735455366
WVMSLSLL	8	Unmodified	_WVMSLSLL_					0	0	0			REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	REV__nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	474.764789	947.515025	-0.45774	-0.00021732	0.62249	0.00029554	0.16475	7.8217E-05	474.76496148021124	72.312	1.4109	72.114	71.467	72.878	-0.1981	-0.094968	0.00084958	NaN	55.504	71	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548730	+		89858	28939	62505	62607							0.039168011735455366
WVPQLFNID	9	Unmodified	_WVPQLFNID_					0	0	0		ENST00000395505.6_1_9:95608217-95608430:-|nuORF	ENST00000395505.6_1_9:95608217-95608430:-|nuORF	ENST00000395505.6_1_9:95608217-95608430:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	566.7544555664062	2	566.295299	1130.57605	0.33006	0.00018691	-3.5279	-0.0019978	-3.1978	-0.0018109	566.2927739427653	50.858	0.25769	50.582	50.407	50.665	-0.27643					10	6	2	0	0	0	0.024427	1	5154	5154		34.173	0	1	210910			89859	13522	62506	62608	100045	100045					0.015980294773271453
WVSVLTKW	8	Unmodified	_WVSVLTKW_					0	0	0		ENST00000564085.5_1_16:77769737-77775844:+|nuORF	ENST00000564085.5_1_16:77769737-77775844:+|nuORF	ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	508.7959289550781	2	509.789653	1017.56475	-0.14891	-7.5914E-05	-1.0694	-0.00054516	-1.2183	-0.00062107	509.78950769270995	102.58	0.35339	102.45	102.23	102.59	-0.12666					12	7	2	0	0	0	0.027866	1	12758	12758		42.474	1.9018	1	33299			89860	16880	62507	62609	100046	100046					0.05667252173839188
WWDQDNLY	8	Unmodified	_WWDQDNLY_					0	0	0			REV__ENST00000490079.5_1_1:12040535-12042132:+|nuORF	REV__ENST00000490079.5_1_1:12040535-12042132:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.7750854492188	2	570.243264	1138.47197	1.0107	0.00057632	-1.1131	-0.00063474	-0.10245	-5.8419E-05	570.2424589690983	77.64	0.79704	77.397	77.112	77.909	-0.24232					41	18	3	0	0	0	0.027866	1	9280	9280		65.803	19.851	1	1538800	+		89861	33692	62508	62610	100047	100047					-0.09172297350187364
WWFFTLII	8	Unmodified	_WWFFTLII_					0	0	0		nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000152578|ENST00000282499|GRIA4;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;GRIK2|p.K848Ifs*12|1|0.1|ENSG00000164418|chr6:102055560-102055561|-/T|frameshift_variant;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENST00000487395.1_1_6:102376237-102441071:+|nuORF;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1	nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;ENSG00000152578|ENST00000282499|GRIA4;nc|ENSG00000125675|P42263|GRIA3;nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.312744140625	2	563.310221	1124.60589	0.58838	0.00033144	4.316	0.0024312	4.9043	0.0027627	563.312380866116	96.815	1.3744	96.815	96.44	97.815	-3.0518E-05					85	30	4	0	0	0	0.48546	1	12269	12269		86.935	7.222	1	749740			89862	7277;6281;6476;7162;3799;4126	62509	62611	100048	100048					0.048570132133363586
WWKWLRQKRWL	11	Unmodified	_WWKWLRQKRWL_					0	0	0			REV__chr12:54283132-54283827|520|59.59|0.0|22.51|+|1|HNRNPA1,HNRNPA1|1	REV__chr12:54283132-54283827|520|59.59|0.0|22.51|+|1|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	422.5132751464844	4	422.243944	1684.94667	-0.43365	-0.00018311	-4.367	-0.0018439	-4.8006	-0.002027	422.24281603280696	32.161	0.39686	32.173	31.902	32.299	0.011795					13	9	2	0	0	0	0.024901	1	2173	2173		3.6191	2.2971	1	95946	+		89863	19361	62510	62612	100049	100049					0.13159459587041056
WWLADAYTSF	10	Unmodified	_WWLADAYTSF_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-4|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-4|KCNQ5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.5301818847656	3	420.529235	1258.56587	-0.10165	-4.2748E-05	2.4233	0.0010191	2.3217	0.00097633	420.5301827519625	17.297	0.60161	17.09	16.913	17.514	-0.20669					25	11	3	0	0	0	1.0816	1	159	159		35.152	3.1179	1	247980	+		89864	27793	62511	62613	100050	100050					-0.05306578247927973
WWLGAGDQP	9	Unmodified	_WWLGAGDQP_					0	0	0		SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|59|2|anti-sense	SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|59|2|anti-sense	SVA_D_dup896|chr11:59699055-59700545:+|4.441492180846745|0.1302840820196387|5.09|521.0|59|2|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.2771606445312	2	515.243067	1028.47158	-0.51808	-0.00026694	1.5104	0.00077822	0.9923	0.00051128	515.2429097568138	68.644	0.11944	68.644	68.56	68.68	0					4	2	2	0	0	0	0.024405	1	8244	8244		35.618	0	1	33012			89865	38022	62512	62614	100051	100051					-0.04151672279385821
WWPAMVVSW	9	Unmodified	_WWPAMVVSW_					0	0	0		nc|ENSG00000088305|Q9UBC3-7|DNMT3B;nc|ENSG00000088305|Q9UBC3-4|DNMT3B;nc|ENSG00000088305|Q9UBC3-8|DNMT3B;nc|ENSG00000088305|Q9UBC3-3|DNMT3B;nc|ENSG00000088305|Q9UBC3-5|DNMT3B;nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;ENSG00000088305|ENST00000328111|DNMT3B	nc|ENSG00000088305|Q9UBC3-7|DNMT3B	nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.2813110351562	2	581.281137	1160.54772	-0.55479	-0.00032249	-1.2556	-0.00072988	-1.8104	-0.0010524	581.2803643771553	52.201	0.81509	52.017	51.741	52.557	-0.18404					52	20	4	0	0	0	0.21579	1	5410	5410		86.935	7.4836	1	2962000			89866	1866	62513	62615	100052	100052					-0.02612991703631451
WWQWQRQRQRR	11	Unmodified	_WWQWQRQRQRR_					0	0	0			REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.9344787597656	4	429.229091	1712.88726	-0.458	-0.00019659	-1.1634	-0.00049937	-1.6214	-0.00069596	429.2284761022415	27.997	0.72626	27.829	27.487	28.213	-0.16816					24	17	2	0	0	0	0.024904	1	1636	1636		1.3219	0.95051	1	153930	+		89867	29479	62514	62616	100053	100053					0.059329566255655664
WWQWQRQRQRR	11	Unmodified	_WWQWQRQRQRR_					0	0	0			REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		4	429.229091	1712.88726	-0.075724	-3.2503E-05	-1.9051	-0.00081774	-1.9809	-0.00085024	429.2280293299374	27.999	0.61761	27.753	27.463	28.081	-0.24524	-0.030524	-0.00067805	NaN	1.3219	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118400	+		89868	29479	62514	62616							0.059329566255655664
WWQWQRQRQRR	11	Unmodified	_WWQWQRQRQRR_					0	0	0			REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	REV__ENST00000247706.3_1_19:17411946-17414055:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		4	429.229091	1712.88726	0.074046	3.1783E-05	-1.7272	-0.00074138	-1.6532	-0.0007096	429.479496351963	27.921	0.3969	27.769	27.526	27.922	-0.15195	-0.014542	-0.00037263	NaN	1.3219	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123620	+		89869	29479	62514	62616							0.059329566255655664
WWRKILKYFWM	11	Unmodified	_WWRKILKYFWM_					0	0	0		nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	nc|ENSG00000154864|Q9H5I5|PIEZO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.2249755859375	3	552.967242	1655.8799	-0.25193	-0.00013931	-4.4666	-0.0024699	-4.7185	-0.0026092	552.9650008968741	30.873	0.33336	30.721	30.553	30.887	-0.15231					13	7	2	0	0	0	0.024904	1	1972	1972		0	0	1	98755			89870	6441	62515	62617	100054	100054					0.07819087980919903
WWRQVLEKLLA	11	Unmodified	_WWRQVLEKLLA_					0	0	0		ENSG00000214681|ENST00000446461|IQCF5	ENSG00000214681|ENST00000446461|IQCF5	ENSG00000214681|ENST00000446461|IQCF5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.28314208984375	3	481.281995	1440.82415	0.87515	0.00042119	2.3768	0.0011439	3.252	0.0015651	481.28300595195043	101.29	2.0119	101.16	100.57	102.58	-0.13156					148	48	4	0	0	0	1.0563	1	12573	12573		23.378	5.5448	1	1033300			89871	10563	62516	62618	100055	100055					0.12137578064994159
WWRRPRRPRRL	11	Unmodified	_WWRRPRRPRRL_					0	0	0			REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.3284301757812	3	545.662426	1633.96545	-0.62646	-0.00034184	-4.3195	-0.002357	-4.9459	-0.0026988	545.6606627354612	104.52	1.595	104.52	103.62	105.21	-0.0015945					89	44	3	0	0	0	1.1135	1	13413	13413		1.523	1.1516	1	77862	+		89872	31188	62517	62619	100056	100056					0.17382434001456204
WWRRWRARRQP	11	Unmodified	_WWRRWRARRQP_					0	0	0			REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2663879394531	4	414.232905	1652.90251	1.037	0.00042954	1.1138	0.00046139	2.1508	0.00089093	414.2336050044895	17.903	0.24944	17.749	17.607	17.857	-0.15403					7	4	2	0	0	0	0.024904	1	224	224		1.4188	1.0473	1	10366	+		89873	31145	62518	62620	100057	100057					0.10217868213430847
WWRWRRARWQP	11	Unmodified	_WWRWRRARWQP_					0	0	0		nc|ENSG00000171160|Q8NDC4-2|MORN4	nc|ENSG00000171160|Q8NDC4-2|MORN4	nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	561.8297119140625	3	561.967515	1682.88072	-0.28	-0.00015735	-3.5586	-0.0019998	-3.8386	-0.0021572	561.9655195618282	43.306	0.8392	43.194	42.854	43.693	-0.11253					52	22	3	0	0	0	0.024902	1	4026	4026		3.026	1.6072	1	532310			89874	18512	62519	62621	100058	100058					0.06659063464871906
WWRWRRARWQP	11	Unmodified	_WWRWRRARWQP_					0	0	0		nc|ENSG00000171160|Q8NDC4-2|MORN4	nc|ENSG00000171160|Q8NDC4-2|MORN4	nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2708740234375	3	561.967515	1682.88072	-0.23539	-0.00013228	0.040362	2.2682E-05	-0.19503	-0.0001096	562.3023778138542	26.122	0.41487	25.954	25.809	26.224	-0.16816					21	12	3	0	0	0	0.024834	1	1283	1283		17.833	16.511	1	399220			89875	18512	62519	62621	100059	100059					0.06659063464871906
WWSLVILL	8	Unmodified	_WWSLVILL_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-1|FANCD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	516.29248046875	2	515.310221	1028.60589	-0.89112	-0.0004592	-4.1777	-0.0021528	-5.0688	-0.002612	515.3079336425991	62.916	0.7856	62.676	62.419	63.204	-0.23926					34	18	2	0	0	0	0.027866	1	7333	7333		35.201	6.0512	1	6154100	+		89876	36747	62520	62622	100060	100060					0.0927301321332834
WWTPRHMLPKV	11	Unmodified	_WWTPRHMLPKV_					0	0	0		ENST00000535977.5_1_16:678431-678971:+|nuORF	ENST00000535977.5_1_16:678431-678971:+|nuORF	ENST00000535977.5_1_16:678431-678971:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	484.81610107421875	3	484.264058	1449.77035	-0.08071	-3.9085E-05	-2.4062	-0.0011652	-2.4869	-0.0012043	484.2629725195524	66.439	0.19434	66.191	66.061	66.255	-0.24839					6	4	2	0	0	0	0.02486	1	7624	7624		12.957	0	1	52319			89877	16357	62521	62623	100061	100061					0.06345082361599452
WWTWIDYNRFQ	11	Unmodified	_WWTWIDYNRFQ_					0	0	0		ENSG00000198874|ENST00000359626|TYW1;ENSG00000277149|ENST00000620995|TYW1B;nc|ENSG00000277149|Q6NUM6-2|TYW1B	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.5720520019531	4	404.442663	1613.74155	0.7362	0.00029775	0.77582	0.00031377	1.512	0.00061153	404.4429505164611	21.145	0.4353	20.968	20.678	21.113	-0.17721					12	8	2	0	0	0	0.024898	1	607	607		6.001	0.30226	1	22029			89878	10233	62522	62624	100062	100062					-0.040773637338133994
WYASYSSSI	9	Unmodified	_WYASYSSSI_					0	0	0			REV__ENST00000524540.1_1_11:57439617-57439716:+|nuORF	REV__ENST00000524540.1_1_11:57439617-57439716:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7688598632812	2	532.24019	1062.46583	-0.6044	-0.00032168	-3.2354	-0.001722	-3.8398	-0.0020437	532.2383187042672	40.269	0.59568	40.044	39.773	40.368	-0.225					48	15	4	0	0	0	0.024	1	3502	3502		65.803	0	1	3674100	+		89879	34386	62523	62625	100063	100063					-0.06290815581701281
WYEYYLLYLLR	11	Unmodified	_WYEYYLLYLLR_					0	0	0			REV__ENSG00000130368|ENST00000674077|MAS1	REV__ENSG00000130368|ENST00000674077|MAS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.7818603515625	3	532.28166	1593.82315	-1.0302	-0.00054833	2.3795	0.0012666	1.3494	0.00071825	532.6159068730315	45.741	0.41063	45.59	45.412	45.823	-0.15156					20	11	3	0	0	0	0.024876	1	4483	4483		13.508	0	1	402490	+		89880	23108	62524	62626	100064	100064					0.04999318905424843
WYFHVPCRYDL	11	Unmodified	_WYFHVPCRYDL_					0	0	0			REV__ENSG00000112996|ENST00000507110|MRPS30	REV__ENSG00000112996|ENST00000507110|MRPS30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	499.2719421386719	3	500.236057	1497.68634	-0.1557	-7.7886E-05	-1.5849	-0.00079284	-1.7406	-0.00087073	500.2350718575945	61.669	0.40805	61.74	61.512	61.92	0.071129					21	10	3	0	0	0	0.024834	1	7091	7091		12.957	0	1	218150	+		89881	22036	62525	62627	100065	100065					-0.04259493525933067
WYFHVPCRYDL	11	Unmodified	_WYFHVPCRYDL_					0	0	0			REV__ENSG00000112996|ENST00000507110|MRPS30	REV__ENSG00000112996|ENST00000507110|MRPS30	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	500.236057	1497.68634	-0.20682	-0.00010346	-1.8276	-0.00091424	-2.0344	-0.0010177	500.2350009843193	61.711	0.4877	61.711	61.453	61.941	0	-0.014603	-0.00015838	NaN	12.957	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183600	+		89882	22036	62525	62627							-0.04259493525933067
WYHLDLGEET	10	Unmodified	_WYHLDLGEET_					0	0	0			REV__ENSG00000116198|ENST00000378230|CEP104	REV__ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	631.3268432617188	2	631.788035	1261.56152	-1.1079	-0.00069997	1.662	0.00105	0.55404	0.00035004	631.7893570699504	56.202	0.55065	56.045	55.783	56.334	-0.15655					21	13	2	0	0	0	0.03519	1	6116	6116		29.15	0	1	110340	+		89883	22267	62526	62628	100066	100066					-0.05880087461491712
WYVWHNTFN	9	Unmodified	_WYVWHNTFN_					0	0	0			REV__ENSG00000135517|ENST00000652304|MIP	REV__ENSG00000135517|ENST00000652304|MIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.7845458984375	2	633.788173	1265.56179	-0.86167	-0.00054612	-4.3151	-0.0027349	-5.1768	-0.003281	633.7853790143155	43.035	0.64922	42.809	42.484	43.133	-0.22597					49	16	4	0	0	0	0.76818	1	3898	3898		26.693	0	1	2381100	+		89884	23551	62527	62629	100067	100067					-0.06036622950978199
WYYPLQWWKYV	11	Unmodified	_WYYPLQWWKYV_					0	0	0			REV__nc|ENSG00000115159|P43304-2|GPD2;REV__ENST00000587908.1_1_19:56832840-56833431:-|nuORF	REV__nc|ENSG00000115159|P43304-2|GPD2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	544.7824096679688	3	544.606367	1630.79727	-1.1613	-0.00063243	-0.55196	-0.0003006	-1.7132	-0.00093303	544.9404429760723	38.808	0.22835	38.808	38.639	38.868	0					6	5	2	0	0	0	0.024901	1	3266	3266		3.6191	0.21035	1	84811	+		89885	22170;35636	62528	62630	100068	100068					0.00710469453792939
YAAIVHPL	8	Unmodified	_YAAIVHPL_					0	0	0		ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	2	442.255446	882.496338	-0.27637	-0.00012223	-4.3418	-0.0019202	-4.6182	-0.0020424	442.2532291620284	31.992	0.83059	31.992	31.509	32.34	0					30	20	2	0	0	0	0.027866	1	2115	2115		24.504	1.4673	1	78076			89886	9352	62529	62631	100069	100069					0.05039007593984479
YAAIVHPL	8	Unmodified	_YAAIVHPL_					0	0	0		ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	442.255446	882.496338	-0.24886	-0.00011006	-3.4058	-0.0015062	-3.6547	-0.0016163	442.2536112063936	32.068	0.20154	32.131	31.961	32.163	0.062885	0.069085	0.00055982	NaN	24.504	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67468			89887	9352	62529	62631							0.05039007593984479
YAATRATL	8	Unmodified	_YAATRATL_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	433.74041748046875	2	433.74016	865.465767	0.071928	3.1198E-05	0.19754	8.5681E-05	0.26947	0.00011688	433.7401256142747	35.16	0.66496	34.945	34.671	35.336	-0.21556					40	16	4	0	0	0	0.15467	1	2642	2642		148.04	45.27	1	1322700			89888	6189	62530	62632	100070	100070					0.027652292089555885
YAATRATL	8	Unmodified	_YAATRATL_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	433.7401123046875	2	433.74016	865.465767	-0.074657	-3.2382E-05	0.53583	0.00023241	0.46118	0.00020003	433.74016703420017	35.046	0.70004	34.859	34.56	35.26	-0.18675					36	17	4	0	0	0	0.30694	1	2623	2623		110.12	30.181	1	1326300			89889	6189	62530	62632	100071	100071					0.027652292089555885
YAATRATL	8	Unmodified	_YAATRATL_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	433.74016	865.465767	-0.27945	-0.00012121	0.606	0.00026285	0.32656	0.00014164	433.7402643979619	35.146	0.71211	34.933	34.642	35.354	-0.21246	0.020945	0.00013577	NaN	148.04	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1175300			89890	6189	62530	62632							0.027652292089555885
YACFIHLL	8	Unmodified	_YACFIHLL_					0	0	0			REV__CERS2|p.W319C|1|0.29|ENSG00000143418|chr1:150966521-150966521|C/G|missense_variant	REV__CERS2|p.W319C|1|0.29|ENSG00000143418|chr1:150966521-150966521|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	490.74493408203125	2	490.257131	978.499709	-0.038535	-1.8892E-05	4.4001	0.0021572	4.3615	0.0021383	490.2587535169942	42.404	0.54325	42.174	41.899	42.442	-0.23029					17	14	2	0	0	0	0.027866	1	3844	3844		33.493	0	1	154190	+		89891	19295	62531	62633	100072	100072					0.009599343763625257
YACFIHLL	8	Unmodified	_YACFIHLL_					0	0	0			REV__CERS2|p.W319C|1|0.29|ENSG00000143418|chr1:150966521-150966521|C/G|missense_variant	REV__CERS2|p.W319C|1|0.29|ENSG00000143418|chr1:150966521-150966521|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	490.257131	978.499709	-0.14261	-6.9914E-05	3.8736	0.001899	3.731	0.0018291	490.25883940828913	42.391	0.34041	42.259	42.115	42.455	-0.13219	0.10923	3.2717E-05	NaN	33.493	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96867	+		89892	19295	62531	62633							0.009599343763625257
YACFIHLL	8	Unmodified	_YACFIHLL_					0	0	0			REV__CERS2|p.W319C|1|0.29|ENSG00000143418|chr1:150966521-150966521|C/G|missense_variant	REV__CERS2|p.W319C|1|0.29|ENSG00000143418|chr1:150966521-150966521|C/G|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.257131	978.499709	-0.50606	-0.0002481	3.4684	0.0017004	2.9623	0.0014523	490.25846297462186	42.139	0.55643	42.016	41.786	42.343	-0.12299	-0.13348	-0.00036458	NaN	33.493	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153550	+		89893	19295	62531	62633							0.009599343763625257
YADILRRLP	9	Unmodified	_YADILRRLP_					0	0	0			REV__ENSG00000164776|ENST00000297373|PHKG1	REV__ENSG00000164776|ENST00000297373|PHKG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	558.3428955078125	2	558.82984	1115.64513	-0.49864	-0.00027866	-0.89426	-0.00049974	-1.3929	-0.00077839	558.8289537641202	30.357	0.41882	30.113	29.905	30.323	-0.24415					15	9	2	0	0	0	0.024541	1	1910	1910		11.511	5.1984	1	79619	+		89894	25801	62532	62634	100073	100073					0.09193113496894512
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|9|fusion	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.2380981445312	2	525.237981	1048.46141	-1.0619	-0.00055777	0.70315	0.00036932	-0.35879	-0.00018845	525.2379843566193	44.187	1.3385	44.083	43.741	45.079	-0.10468					88	35	4	0	0	0	0.15366	6	4120	4087;4097;4108;4120;4132;4147		98.629	34.422	1	20424000			89895	3727	62533	62635	100074;100075;100076;100077;100078;100079	100077					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|9|fusion	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.2380981445312	2	525.237981	1048.46141	-0.9494	-0.00049866	0.70303	0.00036926	-0.24636	-0.0001294	525.2379627132087	44.401	1.348	44.157	43.751	45.099	-0.2444					86	35	4	0	0	0	0.2101	6	4137	4103;4114;4125;4137;4151;4164		87.696	23.489	1	17509000			89896	3727	62533	62635	100080;100081;100082;100083;100084;100085	100083					-0.060882800046329066
YADPVNAHY	9	Unmodified	_YADPVNAHY_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;PTBP3-SUSD1|8|fusion;PTBP3-SUSD1|6|fusion;PTBP3-SUSD1|7|fusion;PTBP3-SUSD1|5|fusion;PTBP3-SUSD1|9|fusion	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.2378540039062	2	525.237981	1048.46141	-0.97406	-0.00051161	0.72069	0.00037854	-0.25337	-0.00013308	525.2380328833734	44.412	1.2213	44.193	43.826	45.048	-0.21939					91	32	4	0	0	0	0.15366	6	4103	4103;4113;4125;4137;4150;4163		98.629	34.345	1	18351000			89897	3727	62533	62635	100086;100087;100088;100089;100090;100091	100086					-0.060882800046329066
YADVYLEDGL	10	Unmodified	_YADVYLEDGL_					0	0	0		ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENSG00000072832|ENST00000324989|CRMP1;ENST00000506216.5_1_4:5858033-5890143:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.848876953125	2	579.271687	1156.52882	0.057613	3.3374E-05	0.069544	4.0285E-05	0.12716	7.3659E-05	579.2709623944135	19.262	0.19806	19.062	18.958	19.156	-0.2001					6	3	2	0	0	0	0.03519	1	384	384		15.642	0	1	9857.5			89898	1491	62534	62636	100092	100092					-0.04318294584322757
YAEFLYQIG	9	Unmodified	_YAEFLYQIG_					0	0	0		CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant;ENSG00000106066|ENST00000265394|CPVL	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	552.2534790039062	2	552.274032	1102.53351	-1.2912	-0.0007131	1.0208	0.00056379	-0.27036	-0.00014932	552.275194477669	46.057	0.20314	45.905	45.823	46.026	-0.15156					9	5	3	0	0	0	0.024457	1	4507	4507		29.15	0	1	215000			89899	582	62535	62637	100093	100093					-0.013653656509177381
YAELHDDYF	9	Unmodified	_YAELHDDYF_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.7478637695312	2	586.748379	1171.4822	-0.42757	-0.00025088	-1.2073	-0.00070836	-1.6348	-0.00095924	586.7468653877306	61.527	1.1305	61.313	60.842	61.972	-0.21375					72	27	4	0	0	0	0.43973	1	6843	6843		63.306	11.007	1	2998000	+		89900	21249	62536	62638	100094	100094					-0.09667734415620544
YAELHDDYF	9	Unmodified	_YAELHDDYF_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.74755859375	2	586.748379	1171.4822	-1.0263	-0.00060217	-0.34951	-0.00020507	-1.3758	-0.00080724	586.7476400247386	61.601	1.2872	61.344	60.809	62.097	-0.25725					71	31	4	0	0	0	0.43973	1	6846	6846		63.306	14.095	1	2779800	+		89901	21249	62536	62638	100095	100095					-0.09667734415620544
YAELVGTGDD	10	Unmodified	_YAELVGTGDD_					0	0	0			REV__ENSG00000128513|ENST00000357628|POT1	REV__ENSG00000128513|ENST00000357628|POT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2557983398438	2	520.232561	1038.45057	0.44944	0.00023381	-2.9083	-0.001513	-2.4588	-0.0012792	520.2306960604699	50.722	0.40286	50.446	50.224	50.627	-0.27643					16	10	2	0	0	0	0.03519	1	5125	5125		29.15	0	1	209760	+		89902	22986	62537	62639	100096	100096					-0.06711727169545156
YAFLHRTL	8	Unmodified	_YAFLHRTL_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	510.7851257324219	2	510.784902	1019.55525	-0.10531	-5.3792E-05	-0.48366	-0.00024704	-0.58897	-0.00030084	510.7845987321751	47.123	1.0239	47.027	46.682	47.706	-0.096649					78	27	5	0	0	0	0.28835	4	4594	4584;4594;4606;4619		116.9	45.526	1	8728900			89903	8918	62538	62640	100097;100098;100099;100100	100098					0.046254838883328375
YAFLHRTL	8	Unmodified	_YAFLHRTL_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.7848815917969	2	510.784902	1019.55525	-0.033049	-1.6881E-05	-0.86339	-0.00044101	-0.89644	-0.00045789	510.78447272858705	47.485	1.2775	47.216	46.695	47.973	-0.26939					87	34	4	0	0	0	0.11227	5	4629	4619;4629;4642;4654;4668		157.21	73.921	1	8022000			89904	8918	62538	62640	100101;100102;100103;100104;100105	100102					0.046254838883328375
YAFLHRTL	8	Unmodified	_YAFLHRTL_					0	0	0		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7850341796875	2	510.784902	1019.55525	-0.20264	-0.00010351	-0.75726	-0.0003868	-0.9599	-0.0004903	510.7844478764912	47.263	0.94951	47.069	46.678	47.628	-0.19387					70	25	4	0	0	0	0.30053	4	4591	4591;4599;4611;4624		111.65	51.354	1	7591000			89905	8918	62538	62640	100106;100107;100108;100109	100106					0.046254838883328375
YAFRWLCSPK	10	Unmodified	_YAFRWLCSPK_					0	0	0			REV__ENSG00000063127|ENST00000335875|SLC6A16	REV__ENSG00000063127|ENST00000335875|SLC6A16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	423.5180358886719	3	424.218226	1269.63285	0.1536	6.5161E-05	0.58104	0.00024649	0.73464	0.00031165	424.5529268084969	30.867	0.65613	30.715	30.468	31.124	-0.15231					32	15	3	0	0	0	0.03519	1	1992	1992		41.08	16.848	1	82083	+		89906	20269	62539	62641	100110	100110					0.008817537621553129
YAGIGIAR	8	Unmodified	_YAGIGIAR_					0	0	0			REV__ENSG00000278540|ENST00000616317|ACACA;REV__nc|ENSG00000076555|O00763-2|ACACB	REV__nc|ENSG00000076555|O00763-2|ACACB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.7553405761719	2	410.73742	819.460287	-1.0813	-0.00044412	1.8884	0.00077564	0.80714	0.00033152	410.737968884053	37.744	0.18261	37.525	37.424	37.607	-0.21848					6	4	2	0	0	0	0.027866	1	3048	3048		25.45	8.0852	1	41221	+		89907	20569;29218	62540	62642	100111	100111					0.043335504171295725
YAGINIGPVH	10	Unmodified	_YAGINIGPVH_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.7962646484375	2	520.779816	1039.54508	-0.55157	-0.00028725	-1.6547	-0.00086172	-2.2062	-0.001149	520.7790327454024	48.954	0.53678	48.802	48.433	48.97	-0.15277					22	14	2	0	0	0	0.03519	1	4961	4961		17.365	3.2278	1	139810			89908	6667	62541	62643	100112	100112					0.026888761630971203
YAGRPWALL	9	Unmodified	_YAGRPWALL_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	523.792727	1045.5709	0.97371	0.00051002	1.2113	0.00063446	2.185	0.0011445	523.7933768370049	20.358	0.58076	20.162	19.854	20.435	-0.19577					15	11	2	0	0	0	0.024262	1	493	493		30.504	0	1	37909			89909	2685	62542	62644	100113	100113					0.049937704053718335
YAGTGRAR	8	Unmodified	_YAGTGRAR_					0	0	0			REV__SORCS1|p.S98Y|1|0.31|ENSG00000108018|chr10:107164234-107164234|G/T|missense_variant	REV__SORCS1|p.S98Y|1|0.31|ENSG00000108018|chr10:107164234-107164234|G/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	426.2462158203125	2	426.227751	850.440949	0.81219	0.00034618	1.0998	0.00046878	1.912	0.00081496	426.22927439415054	87.034	0.41943	86.896	86.631	87.05	-0.1373					14	9	2	0	0	0	0.027866	1	10581	10581		12.959	0.75233	1	60329	+		89910	37521	62543	62645	100114	100114					0.009745941262281121
YAHITLAVLRI	11	Unmodified	_YAHITLAVLRI_					0	0	0		ENSG00000178586|ENST00000641019|OR6B3	ENSG00000178586|ENST00000641019|OR6B3	ENSG00000178586|ENST00000641019|OR6B3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2221984863281	3	423.92744	1268.76049	-0.27465	-0.00011643	-3.3928	-0.0014383	-3.6675	-0.0015547	423.9259141706939	29.257	0.4015	29.336	29.165	29.566	0.078344					13	9	2	0	0	0	0.024743	1	1735	1735		23.378	6.8481	1	43565			89911	8821	62544	62646	100115	100115					0.13686217627900987
YAHIWISI	8	Unmodified	_YAHIWISI_					0	0	0		ENSG00000205497|ENST00000641898|OR51A4;ENSG00000205496|ENST00000380371|OR51A2	ENSG00000205497|ENST00000641898|OR51A4	ENSG00000205497|ENST00000641898|OR51A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.2582702636719	2	501.774003	1001.53345	-0.21157	-0.00010616	0.91576	0.00045951	0.7042	0.00035335	502.2748987167369	24.187	0.26292	24.012	23.786	24.048	-0.17484					7	5	2	0	0	0	0.027866	1	1009	1009		35.201	19.559	1	22470			89912	10431	62545	62647	100116	100116					0.03274679139769887
YAHIWISI	8	Unmodified	_YAHIWISI_					0	0	0		ENSG00000205497|ENST00000641898|OR51A4;ENSG00000205496|ENST00000380371|OR51A2	ENSG00000205497|ENST00000641898|OR51A4	ENSG00000205497|ENST00000641898|OR51A4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	501.774003	1001.53345	-0.44093	-0.00022125	7.672	0.0038496	7.231	0.0036283	502.2801883221055	24.298	0.43517	24.298	23.994	24.429	0	0.14308	0.003626	NaN	35.201	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91541			89913	10431	62545	62647							0.03274679139769887
YAIILQLAI	9	Unmodified	_YAIILQLAI_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.77691650390625	2	509.320786	1016.62702	-0.19721	-0.00010045	-0.049692	-2.5309E-05	-0.24691	-0.00012575	509.3205613016827	81.489	1.6035	81.359	81.015	82.618	-0.13075					47	38	2	0	0	0	0.024535	1	10294	10294		25.45	1.2474	1	159270	+		89914	27480	62546	62648	100117	100117					0.11936978522169284
YAIILQLAI	9	Unmodified	_YAIILQLAI_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.320786	1016.62702	-0.63284	-0.00032232	0.84225	0.00042898	0.20941	0.00010666	509.32083966380634	81.444	0.77271	81.444	81.057	81.83	0	0.19532	0.00096895	NaN	33.516	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158120	+		89915	27480	62546	62648							0.11936978522169284
YAIILQLAI	9	Unmodified	_YAIILQLAI_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	509.320786	1016.62702	-0.65138	-0.00033176	0.14797	7.5365E-05	-0.5034	-0.00025639	509.320754237966	81.325	1.3593	81.349	81.126	82.485	0.023911	0.099741	0.00026173	NaN	33.516	53	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153280	+		89916	27480	62546	62648							0.11936978522169284
YAIILQLAI	9	Unmodified	_YAIILQLAI_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.320786	1016.62702	0.22832	0.00011629	-0.8115	-0.00041331	-0.58318	-0.00029702	509.32019215010956	81.354	0.49653	81.126	80.857	81.353	-0.2289	-0.12355	-0.00071563	NaN	33.516	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138640	+		89917	27480	62546	62648							0.11936978522169284
YAIILQLAI	9	Unmodified	_YAIILQLAI_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.320786	1016.62702	0.096105	4.8948E-05	-0.28064	-0.00014293	-0.18453	-9.3987E-05	509.32048360786143	81.278	0.53558	81.085	80.8	81.336	-0.19333	-0.16407	-0.00017487	NaN	33.516	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113010	+		89918	27480	62546	62648							0.11936978522169284
YAIILQLAI	9	Unmodified	_YAIILQLAI_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.320786	1016.62702	-0.48649	-0.00024778	-0.44084	-0.00022453	-0.92733	-0.00047231	509.3205681155109	81.275	0.41574	81.132	80.9	81.316	-0.14248	-0.11687	-0.00033806	NaN	33.516	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106890	+		89919	27480	62546	62648							0.11936978522169284
YAKQNFVKGCE	11	Unmodified	_YAKQNFVKGCE_					0	0	0			REV__nc|ENSG00000293317|Q9H963|ZNF702P	REV__nc|ENSG00000293317|Q9H963|ZNF702P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	430.2660827636719	3	429.544779	1285.61251	0.68418	0.00029389	-0.8297	-0.00035639	-0.14552	-6.2507E-05	429.87886554365184	21.069	0.29423	20.873	20.73	21.024	-0.19577					8	5	2	0	0	0	0.024782	1	605	605		25.126	9.1192	1	10969	+		89920	37242	62547	62649	100118	100118					-0.0188746168828402
YALGRLVAIS	10	Unmodified	_YALGRLVAIS_					0	0	0			REV__ENSG00000126934|ENST00000262948|MAP2K2	REV__ENSG00000126934|ENST00000262948|MAP2K2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.818115234375	2	531.818941	1061.62333	0.41536	0.0002209	-3.8392	-0.0020418	-3.4238	-0.0018209	532.3184785699134	100.02	0.53224	99.883	99.595	100.13	-0.13364					28	15	2	0	0	0	1.089	1	12393	12393		34.173	0	1	765880	+		89921	22912	62548	62650	100119	100119					0.09498308748334239
YALMLCPFVV	10	Unmodified	_YALMLCPFVV_					0	0	0		ENST00000571668.5_1_17:4437040-4440234:+|nuORF;ENST00000573990.1_1_17:4439512-4439722:+|nuORF;ENST00000576635.6_1_17:4439512-4440234:+|nuORF;ENSG00000183018|ENST00000329078|SPNS2	ENST00000571668.5_1_17:4437040-4440234:+|nuORF	ENST00000571668.5_1_17:4437040-4440234:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	577.3172607421875	2	578.300681	1154.58681	0.13981	8.0852E-05	-0.58256	-0.00033689	-0.44275	-0.00025604	578.8006473136448	71.962	0.23875	71.686	71.549	71.788	-0.27509					7	5	2	0	0	0	0.03519	1	8411	8411		12.959	0	1	50271			89922	17043	62549	62651	100120	100120					0.015699725357308125
YALPHAIL	8	Unmodified	_YALPHAIL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	449.26300048828125	2	449.263271	896.511988	0.070373	3.1616E-05	-0.085935	-3.8608E-05	-0.015562	-6.9916E-06	449.2631211680723	63.834	1.1684	63.607	63.291	64.459	-0.22773					77	29	4	0	0	0	0.29808	4	7223	7223;7232;7245;7257		112.7	38.188	1	5897400			89923	1564	62550	62652	100121;100122;100123;100124	100121					0.05959294111039526
YALPHAIL	8	Unmodified	_YALPHAIL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	449.26318359375	2	449.263271	896.511988	-0.04562	-2.0495E-05	0.13315	5.9818E-05	0.087528	3.9323E-05	449.2632033300521	63.888	1.1685	63.695	63.302	64.471	-0.19243					75	29	4	0	0	0	0.29808	4	7230	7230;7240;7252;7267		112.7	38.188	1	5208800			89924	1564	62550	62652	100125;100126;100127;100128	100125					0.05959294111039526
YALPHAIL	8	Unmodified	_YALPHAIL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	449.2632141113281	2	449.263271	896.511988	0.097113	4.363E-05	-0.075177	-3.3774E-05	0.021936	9.8551E-06	449.26309041025365	63.92	1.1879	63.662	63.313	64.501	-0.25824					72	30	4	0	0	0	0.29808	3	7230	7230;7240;7251		112.7	38.188	1	4959700			89925	1564	62550	62652	100129;100130;100131	100129					0.05959294111039526
YALPKGTVL	9	Unmodified	_YALPKGTVL_					0	0	0		nc|ENSG00000019186|Q07973-3|CYP24A1;ENSG00000019186|ENST00000216862|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.7438049316406	2	481.289485	960.564418	-0.29755	-0.00014321	-4.2821	-0.0020609	-4.5796	-0.0022041	481.28755410228354	45.578	0.61399	45.622	45.377	45.991	0.043877					43	17	3	0	0	0	0.024477	1	4344	4344		27.882	0	1	1770500			89926	947	62551	62653	100132	100132					0.08255832453994572
YALRLIFHS	9	Unmodified	_YALRLIFHS_					0	0	0			REV__ENSG00000146143|ENST00000615550|PRIM2	REV__ENSG00000146143|ENST00000615550|PRIM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2802124023438	2	560.319109	1118.62366	0.60109	0.0003368	-3.3966	-0.0019032	-2.7956	-0.0015664	560.3174030362494	86.571	0.56492	86.429	86.147	86.712	-0.14217					18	12	2	0	0	0	0.024477	1	10495	10495		27.882	2.3082	1	59883	+		89927	24463	62552	62654	100133	100133					0.06909728468190224
YALTCAITL	9	Unmodified	_YALTCAITL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	484.7582702636719	2	484.759704	967.504854	0.18418	8.9284E-05	1.5966	0.00077398	1.7808	0.00086327	484.7602809420432	98.856	0.38878	98.687	98.506	98.895	-0.16863					11	8	2	0	0	0	0.94809	1	12241	12241		29.15	4.6304	1	43703	+		89928	20119	62553	62655	100134	100134					0.019801934483098194
YALTCAITL	9	Unmodified	_YALTCAITL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	484.759704	967.504854	0.16388	7.9444E-05	0.39837	0.00019311	0.56225	0.00027256	484.75998712856716	98.908	0.62118	98.908	98.647	99.268	0	0.15652	-0.0003716	NaN	29.15	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68274	+		89929	20119	62553	62655							0.019801934483098194
YALTCAITL	9	Unmodified	_YALTCAITL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	484.759704	967.504854	0.79861	0.00038713	0.39782	0.00019285	1.1964	0.00057998	484.75993030583265	98.794	0.47854	98.658	98.456	98.935	-0.13625	-0.092954	-0.00037213	NaN	29.15	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62717	+		89930	20119	62553	62655							0.019801934483098194
YALTCAITL	9	Unmodified	_YALTCAITL_					0	0	0			REV__ENSG00000047188|ENST00000161863|YTHDC2	REV__ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	484.759704	967.504854	0.18418	8.9284E-05	1.5966	0.00077398	1.7808	0.00086327	484.7602809420432	98.856	0.38878	98.687	98.506	98.895	-0.16863	-0.063569	0.00079014	NaN	29.15	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43703	+		89931	20119	62553	62655							0.019801934483098194
YALVDWMVVGF	11	Unmodified	_YALVDWMVVGF_					0	0	0			REV__EPHA8|p.E830D|1|0.54|ENSG00000070886|chr1:22600762-22600762|G/T|missense_variant	REV__EPHA8|p.E830D|1|0.54|ENSG00000070886|chr1:22600762-22600762|G/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.8851623535156	3	433.886253	1298.63693	-0.26699	-0.00011585	-2.3061	-0.0010006	-2.5731	-0.0011164	433.88515315163863	20.382	2.1685	20.277	19.932	22.1	-0.10477					94	44	3	0	0	0	0.98542	1	515	515		40.058	4.88	1	254560	+		89932	36000	62554	62656	100135	100135					-0.00044201534774401807
YAMLAERSF	9	Unmodified	_YAMLAERSF_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	544.2672119140625	2	544.265684	1086.51682	-0.93019	-0.00050627	3.9797	0.002166	3.0495	0.0016597	544.2678957380646	35.941	2.7271	35.736	35.186	37.913	-0.20518					199	72	5	0	0	0	0.29104	2	2771	2771;2846		76.847	13.313	1	54405000	+		89933	26508	62555	62657	100136;100137	100136					-0.022981898084935892
YAMLAERSF	9	Unmodified	_YAMLAERSF_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	544.2676391601562	2	544.265684	1086.51682	-0.25027	-0.00013621	3.2193	0.0017522	2.969	0.0016159	544.2674991425346	35.901	2.7528	35.684	35.15	37.903	-0.21661					212	72	5	0	0	0	0.40179	1	2758	2758		65.803	2.2693	1	66783000	+		89934	26508	62555	62657	100138	100138					-0.022981898084935892
YAMLAERSF	9	Unmodified	_YAMLAERSF_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	544.2673950195312	2	544.265684	1086.51682	-0.31654	-0.00017228	3.2412	0.0017641	2.9247	0.0015918	544.2675216665498	35.757	3.1662	35.558	34.937	38.103	-0.19829					255	84	6	0	0	0	0.25032	3	2775	2715;2727;2775		82.305	14.575	1	110170000	+		89935	26508	62555	62657	100139;100140;100141	100141					-0.022981898084935892
YAMVTLLLNDL	11	Unmodified	_YAMVTLLLNDL_					0	0	0			REV__ENSG00000127530|ENST00000641666|OR7C1	REV__ENSG00000127530|ENST00000641666|OR7C1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	423.2585754394531	3	422.56518	1264.67371	-0.81619	-0.00034489	-0.10688	-4.5165E-05	-0.92307	-0.00039006	422.5651668849916	27.01	0.61128	27.092	26.96	27.571	0.081293					22	16	2	0	0	0	0.024735	1	1393	1393		21.78	12.134	1	173080	+		89936	22938	62556	62658	100142	100142					0.05196050291192478
YANAAPYKSI	10	Unmodified	_YANAAPYKSI_					0	0	0			REV__ENST00000497384.1_1_1:24696162-24710359:-|nuORF	REV__ENST00000497384.1_1_1:24696162-24710359:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.85546875	2	549.284931	1096.55531	-0.88358	-0.00048534	-2.0991	-0.001153	-2.9827	-0.0016383	549.7858611202425	79.778	0.33323	79.8	79.688	80.021	0.021446					10	7	2	0	0	0	0.03519	1	9847	9847		40.778	25.136	1	224080	+		89937	19758	62557	62659	100143	100143					0.010894390976545765
YANGKFFFI	9	Unmodified	_YANGKFFFI_					0	0	0			REV__ENSG00000154485|ENST00000368808|MMP21	REV__ENSG00000154485|ENST00000368808|MMP21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.2376708984375	2	553.78711	1105.55967	0.42858	0.00023734	-0.40148	-0.00022233	0.027107	1.5012E-05	553.7859219901374	58.52	0.2137	58.279	58.086	58.3	-0.24165					6	4	2	0	0	0	0.024443	1	6398	6398		35.201	0	1	73914	+		89938	24963	62558	62660	100144	100144					0.011109483112250018
YAPAGSEVDR	10	Unmodified	_YAPAGSEVDR_					0	0	0		ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000464876.5_1_9:139914760-139916113:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000494046.5_1_9:139914760-139922592:-|nuORF;ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000494046.5_1_9:139914760-139922592:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.3111572265625	2	532.753995	1063.49344	-0.91018	-0.0004849	4.0146	0.0021388	3.1044	0.0016539	532.7559371748512	35.425	0.47241	35.213	35	35.472	-0.21246					16	11	2	0	0	0	0.03519	1	2716	2716		51.335	5.3632	1	169060			89939	15517;2835	62559	62661	100145	100145					-0.03576912321477721
YAPIRHGW	8	Unmodified	_YAPIRHGW_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	499.8082580566406	2	500.261594	998.508634	-1.44	-0.00072035	2.5177	0.0012595	1.0777	0.00053913	500.26269210094506	37.739	0.58979	37.52	37.304	37.894	-0.21849					24	15	3	0	0	0	0.027866	1	3091	3091		28.254	0	1	269970	+		89940	28600	62560	62662	100146	100146					0.009320440570377286
YAPLDLPGSA	10	Unmodified	_YAPLDLPGSA_					0	0	0		ENSG00000159184|ENST00000290295|HOXB13	ENSG00000159184|ENST00000290295|HOXB13	ENSG00000159184|ENST00000290295|HOXB13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2577209472656	2	502.258382	1002.50221	-0.23854	-0.00011981	-1.231	-0.00061828	-1.4695	-0.00073809	502.25762022912573	24.074	1.2306	23.895	23.319	24.549	-0.17943					65	28	4	0	0	0	0.91051	1	1020	1020		53.351	8.9743	1	615360			89941	6726	62561	62663	100147	100147					0.0010606131501162963
YAPTIRAL	8	Unmodified	_YAPTIRAL_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	453.2821960449219	2	452.766178	903.517802	0.35224	0.00015948	0.09449	4.2782E-05	0.44673	0.00020227	452.76592142378274	56.033	0.6738	56.033	55.75	56.424	0					25	18	2	0	0	0	0.027866	1	6191	6191		24.203	0	1	151740			89942	6870	62562	62664	100148	100148					0.06218392622713509
YAPTIRAL	8	Unmodified	_YAPTIRAL_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	453.2818908691406	2	452.766178	903.517802	-0.63812	-0.00028892	0.46679	0.00021135	-0.17132	-7.7569E-05	452.7661610768241	55.767	0.50131	55.865	55.707	56.209	0.098015					21	13	2	0	0	0	0.027866	1	6085	6085		17.365	0	1	171740			89943	6870	62562	62664	100149	100149					0.06218392622713509
YAPVAFRYF	9	Unmodified	_YAPVAFRYF_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C;ENST00000587482.1_1_19:3649915-3700388:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL;nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.7635498046875	2	567.292559	1132.57057	-0.61318	-0.00034785	3.3482	0.0018994	2.735	0.0015516	567.2943050473649	20.405	0.67523	20.301	20.03	20.705	-0.10477					34	13	4	0	0	0	0.024487	1	572	572		17.365	0	1	311190			89944	15202;9515	62563	62665	100150	100150					0.009583506855278756
YARLVNEL	8	Unmodified	_YARLVNEL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	488.77752685546875	2	489.274367	976.53418	0.42165	0.0002063	-0.93509	-0.00045751	-0.51344	-0.00025121	489.27370776527	51.13	0.34309	51.018	50.786	51.129	-0.11163					17	8	3	0	0	0	0.027866	1	5250	5250		57.811	13.694	1	654170			89945	4214	62564	62666	100151	100151					0.04497473788796924
YARLVNEL	8	Unmodified	_YARLVNEL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	489.274367	976.53418	1.1205	0.00054824	-1.548	-0.00075741	-0.42751	-0.00020917	489.27328525396354	51.146	0.37927	50.965	50.723	51.102	-0.18071	-0.060113	-0.00064535	NaN	38.806	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717340			89946	4214	62564	62666							0.04497473788796924
YASDIYTLDSL	11	Unmodified	_YASDIYTLDSL_					0	0	0			REV__nc|ENSG00000116191|Q86X27-2|RALGPS2	REV__nc|ENSG00000116191|Q86X27-2|RALGPS2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.7820129394531	3	420.871326	1259.59215	2.3989	0.0010096	0.90873	0.00038246	3.3076	0.0013921	420.87198473090393	24.608	0.3926	24.427	24.198	24.59	-0.18089					13	8	3	0	0	0	0.024762	1	1068	1068		36.318	3.2782	1	31193	+		89947	22265	62565	62667	100152	100152					-0.027263538670695198
YASDIYTLDSL	11	Unmodified	_YASDIYTLDSL_					0	0	0			REV__nc|ENSG00000116191|Q86X27-2|RALGPS2	REV__nc|ENSG00000116191|Q86X27-2|RALGPS2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	420.871326	1259.59215	-0.20886	-8.7903E-05	2.8926	0.0012174	2.6837	0.0011295	420.87265170447847	24.769	0.34053	24.554	24.336	24.677	-0.2151	0.063441	0.0011501	NaN	36.318	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41001	+		89948	22265	62565	62667							-0.027263538670695198
YASGKAQSLLG	11	Unmodified	_YASGKAQSLLG_					0	0	0			REV__ENSG00000223496|ENST00000435634|EXOSC6	REV__ENSG00000223496|ENST00000435634|EXOSC6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	548.2764282226562	2	547.795663	1093.57677	-0.37466	-0.00020524	-0.21948	-0.00012023	-0.59415	-0.00032547	547.7955256169081	62.117	0.58225	61.903	61.662	62.244	-0.21375					36	14	3	0	0	0	0.024643	1	6966	6966		40.058	0	1	1302900	+		89949	28848	62566	62668	100153	100153					0.03372824126381602
YASNISIAHVL	11	Unmodified	_YASNISIAHVL_					0	0	0			REV__nc|ENSG00000067842|Q16720-4|ATP2B3	REV__nc|ENSG00000067842|Q16720-4|ATP2B3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	594.74462890625	2	594.324588	1186.63462	-1.3884	-0.00082515	-2.2673	-0.0013475	-3.6557	-0.0021727	594.3236825863579	30.422	0.32626	30.244	30.04	30.366	-0.17818					10	7	2	0	0	0	0.024738	1	1926	1926		42.396	12.078	1	38081	+		89950	20367	62567	62669	100154	100154					0.048770860518061454
YATGSFIVSTP	11	Unmodified	_YATGSFIVSTP_					0	0	0			REV__ENST00000398831.7_1_22:22050099-22050438:+|nuORF	REV__ENST00000398831.7_1_22:22050099-22050438:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.78857421875	2	571.790047	1141.56554	1.6487	0.00094268	-2.8894	-0.0016521	-1.2407	-0.00070942	571.788342028554	16.885	0.34018	16.731	16.567	16.907	-0.15376					14	6	3	0	0	0	1.0685	1	124	124		19.997	1.7347	1	119460	+		89951	31810	62568	62670	100155	100155					0.0004200203222808341
YATRYDLY	8	Unmodified	_YATRYDLY_					0	0	0		ENST00000593477.1_1_19:41312411-41313222:+|nuORF	ENST00000593477.1_1_19:41312411-41313222:+|nuORF	ENST00000593477.1_1_19:41312411-41313222:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	532.2977905273438	2	532.756007	1063.49746	-0.22112	-0.0001178	-1.1468	-0.00061099	-1.368	-0.00072879	532.7554564609529	34.683	0.60635	34.459	34.219	34.825	-0.22412					24	13	2	0	0	0	0.027866	1	2570	2570		29.15	0	1	206260			89952	17393	62569	62671	100156	100156					-0.031748228277592716
YATVTPVPAYF	11	Unmodified	_YATVTPVPAYF_					0	0	0			REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	REV__nc|ENSG00000178882|Q6ZTI6-2|RFLNA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	615.2837524414062	2	614.816064	1227.61758	-1.4748	-0.00090676	1.3277	0.00081627	-0.14717	-9.0485E-05	614.8169442646923	54.988	0.41387	54.842	54.608	55.022	-0.14609					18	10	2	0	0	0	0.024759	1	5903	5903		42.396	6.7778	1	165270	+		89953	27212	62570	62672	100157	100157					0.012871654460013815
YATVYMFF	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))YATVYM(Oxidation (M))FF_		YATVYM(1)FF		YATVYM(87)FF	1	0	1			REV__ENST00000290858.10_1_16:67133564-67133669:+|nuORF	REV__ENST00000290858.10_1_16:67133564-67133669:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	550.2461547851562	2	550.243886	1098.47322	-0.19784	-0.00010886	-0.058866	-3.239E-05	-0.2567	-0.00014125	550.2434922841134	78.494	1.3194	78.239	77.826	79.145	-0.25471					84	30	4	0	0	0	0.48546	1	9353	9353		86.935	12.68	1	1402600	+		89954	29938	62571	62673	100158	100158		864			-0.07207799305638218
YATVYMFF	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))YATVYM(Oxidation (M))FF_		YATVYM(1)FF		YATVYM(75)FF	1	0	1			REV__ENST00000290858.10_1_16:67133564-67133669:+|nuORF	REV__ENST00000290858.10_1_16:67133564-67133669:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	550.2454833984375	2	550.243886	1098.47322	0.26292	0.00014467	-0.85925	-0.0004728	-0.59633	-0.00032813	550.2432483792371	78.453	1.314	78.221	77.75	79.064	-0.23141					77	30	3	0	0	0	0.61897	1	9360	9360		74.517	10.309	1	1510600	+		89955	29938	62571	62673	100159	100159		864			-0.07207799305638218
YATVYMFF	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))YATVYM(Oxidation (M))FF_		YATVYM(1)FF		YATVYM(75)FF	1	0	1			REV__ENST00000290858.10_1_16:67133564-67133669:+|nuORF	REV__ENST00000290858.10_1_16:67133564-67133669:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	550.2459106445312	2	550.243886	1098.47322	-0.066327	-3.6496E-05	-1.2172	-0.00066976	-1.2835	-0.00070626	550.2434491895369	78.346	1.3631	78.19	77.741	79.104	-0.15591					69	31	5	0	0	0	0.61897	1	9334	9334		74.517	13.545	1	1549800	+		89956	29938	62571	62673	100160	100160		864			-0.07207799305638218
YAVKTAVSVT	10	Unmodified	_YAVKTAVSVT_					0	0	0		ENST00000478678.5_1_6:32154995-32157692:-|nuORF;ENSG00000204304|ENST00000375050|PBX2	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	519.2557983398438	2	519.795132	1037.57571	0.30345	0.00015773	0.81257	0.00042237	1.116	0.00058011	519.7951607592518	50.388	0.56524	50.108	49.839	50.404	-0.27977					22	14	2	0	0	0	0.03519	1	5125	5125		39.253	8.7492	1	207860			89957	10327	62572	62674	100161	100161					0.05842609757473838
YAVVLNATW	9	Unmodified	_YAVVLNATW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7769775390625	2	518.776742	1035.53893	0.42573	0.00022086	-0.53283	-0.00027642	-0.10711	-5.5564E-05	518.7764345000295	79.668	0.75326	79.421	79.112	79.865	-0.2465					51	17	4	0	0	0	0.012831	2	9519	9519;9538		261.13	149.48	1	1548300			89958	2061	62573	62675	100162;100163	100162					0.022583579315323732
YAVVLNATW	9	Unmodified	_YAVVLNATW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7767944335938	2	518.776742	1035.53893	0.41447	0.00021502	-0.39971	-0.00020736	0.014768	7.6614E-06	518.7763376423679	79.618	0.83965	79.399	79.076	79.915	-0.21923					56	19	4	0	0	0	0.015231	2	9528	9528;9539		221.53	109.89	1	1296800			89959	2061	62573	62675	100164;100165	100164					0.022583579315323732
YAVVLNATW	9	Unmodified	_YAVVLNATW_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.7771606445312	2	518.776742	1035.53893	0.2653	0.00013763	-0.21937	-0.00011381	0.045923	2.3824E-05	518.7764230613143	79.536	0.84102	79.385	79.067	79.908	-0.15051					55	19	4	0	0	0	0.015231	2	9519	9508;9519		281.45	156.85	1	1774800			89960	2061	62573	62675	100166;100167	100167					0.022583579315323732
YAVVLRKY	8	Unmodified	_YAVVLRKY_					0	0	0		nc|ENSG00000086205|Q04609-6|FOLH1;ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1;PACS1-FOLH1|2|fusion;PACS1-FOLH1|1|fusion;nc|ENSG00000290503|Q9HBA9|FOLH1B;nc|ENSG00000086205|Q04609-10|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	nc|ENSG00000086205|Q04609-6|FOLH1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.2911071777344	2	506.302927	1010.5913	-0.43034	-0.00021788	-4.2075	-0.0021303	-4.6378	-0.0023481	506.30083314802135	27.754	0.33033	27.598	27.434	27.764	-0.15664					12	7	2	0	0	0	0.027866	1	1511	1511		39.021	0	1	72808			89961	1813	62574	62676	100168	100168					0.08642941065170362
YAVVSKRKI	9	Unmodified	_YAVVSKRKI_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.3328857421875	2	532.334759	1062.65496	-0.26603	-0.00014162	1.4347	0.00076372	1.1686	0.0006221	532.3362792510848	106.81	0.33769	106.81	106.65	106.98	-0.003479					23	11	3	0	0	0	0.92825	1	13675	13675		30.504	7.4612	1	164830			89962	8235	62575	62677	100169	100169					0.12614301502276248
YAVVSKRKI	9	Unmodified	_YAVVSKRKI_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	532.334759	1062.65496	0.3389	0.00018041	2.2846	0.0012162	2.6235	0.0013966	532.3357702449233	106.78	0.13609	106.78	106.72	106.86	0	-0.038487	-0.0002384	NaN	30.504	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79844			89963	8235	62575	62677							0.12614301502276248
YAVVSKRKI	9	Unmodified	_YAVVSKRKI_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	532.334759	1062.65496	-0.24831	-0.00013218	2.9614	0.0015765	2.7131	0.0014443	532.3362410986954	106.87	0.34176	106.87	106.76	107.1	0.0018311	0.053252	0.00048221	NaN	30.504	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134200			89964	8235	62575	62677							0.12614301502276248
YAWGPEALL	9	Unmodified	_YAWGPEALL_					0	0	0			REV__ENST00000477267.1_1_10:102824694-102827451:+|nuORF	REV__ENST00000477267.1_1_10:102824694-102827451:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	509.7867736816406	2	510.263468	1018.51238	0.18951	9.6698E-05	-4.2588	-0.0021731	-4.0693	-0.0020764	510.26046855764895	60.059	0.33836	60.059	59.88	60.219	0					10	8	2	0	0	0	0.024357	1	6905	6905		54.765	5.5539	1	80760	+		89965	33016	62576	62678	100170	100170					0.003866690402333006
YAWGPEALL	9	Unmodified	_YAWGPEALL_					0	0	0			REV__ENST00000477267.1_1_10:102824694-102827451:+|nuORF	REV__ENST00000477267.1_1_10:102824694-102827451:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	510.263468	1018.51238	-0.72665	-0.00037078	-11.02	-0.0056233	-11.747	-0.0059941	510.257176051409	60.644	0.2516	60.39	60.253	60.504	-0.25373	0.16548	-0.0031259	NaN	44.531	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57315	+		89966	33016	62576	62678							0.003866690402333006
YCDTITNYH	9	Unmodified	_YCDTITNYH_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.7698364257812	2	565.234581	1128.45461	-0.1473	-8.3259E-05	2.5145	0.0014213	2.3672	0.001338	565.2358521341827	40.059	0.53614	39.834	39.541	40.078	-0.225					26	13	3	0	0	0	0.024427	1	3387	3387		42.396	20.436	1	382570	+		89967	21142	62577	62679	100171	100171					-0.10447960947499269
YCDTITNYH	9	Unmodified	_YCDTITNYH_					0	0	0			REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	REV__nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.76953125	2	565.234581	1128.45461	-0.58903	-0.00033294	2.1716	0.0012275	1.5826	0.00089453	565.2354512170517	40.033	0.53984	39.803	39.507	40.046	-0.23021					24	13	2	0	0	0	0.024427	1	3393	3393		42.396	10.441	1	317720	+		89968	21142	62577	62679	100172	100172					-0.10447960947499269
YCEFMKVPCR	10	Unmodified	_YCEFMKVPCR_					0	0	0			REV__ENSG00000121741|ENST00000610343|ZMYM2	REV__ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	638.28857421875	2	638.287779	1274.56101	5.2086	0.0033246	-3.3966	-0.002168	1.8119	0.0011565	638.2855148060747	16.54	0.29419	16.286	16.162	16.456	-0.25378					18	11	2	0	0	0	1.1112	1	71	71		16.473	3.6614	1	42929	+		89969	22603	62578	62680	100173	100173					-0.06529244978173665
YCELVQLT	8	Unmodified	_YCELVQLT_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-3|VPS8	REV__nc|ENSG00000156931|Q8N3P4-3|VPS8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	483.79022216796875	2	484.741511	967.468469	-0.083551	-4.0501E-05	-0.29501	-0.000143	-0.37856	-0.0001835	484.7411987081186	46.107	0.39	46.107	45.953	46.343	0					16	10	2	0	0	0	0.027866	1	4521	4521		45.952	10.334	1	114980	+		89970	25100	62579	62681	100174	100174					-0.01656683448413787
YCFHYQDMT	9	Unmodified	_YCFHYQDMT_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8115234375	3	403.156415	1206.44742	0.39945	0.00016104	-0.29801	-0.00012014	0.10145	4.0899E-05	403.155971429886	28.596	0.21673	28.427	28.337	28.554	-0.16897					7	4	2	0	0	0	0.024344	1	1669	1669		30.318	0	1	16397	+		89971	20251	62580	62682	100175	100175					-0.14755016819594857
YCFKDSGAAKT	11	Unmodified	_YCFKDSGAAKT_					0	0	0			REV__nc|ENSG00000114948|O75077-3|ADAM23	REV__nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	595.7807006835938	2	595.779156	1189.54376	-0.11159	-6.6481E-05	3.1397	0.0018706	3.0281	0.0018041	595.7810079684642	22.222	0.55803	22.033	21.769	22.327	-0.18894					30	11	4	0	0	0	0.849	1	769	769		54.722	1.6334	1	440200	+		89972	36583	62581	62683	100176	100176					-0.043431259879980644
YCFKDSGAAKT	11	Unmodified	_YCFKDSGAAKT_					0	0	0			REV__nc|ENSG00000114948|O75077-3|ADAM23	REV__nc|ENSG00000114948|O75077-3|ADAM23	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	595.779156	1189.54376	-1.2341	-0.00073523	4.3689	0.0026029	3.1349	0.0018677	595.7816391148481	22.444	0.55441	22.259	22	22.554	-0.18539	0.11282	0.00071696	NaN	54.722	30	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379870	+		89973	36583	62581	62683							-0.043431259879980644
YCGLWLLYV	9	Unmodified	_YCGLWLLYV_					0	0	0		ENST00000440625.5_1_7:112092117-112092201:+|nuORF	ENST00000440625.5_1_7:112092117-112092201:+|nuORF	ENST00000440625.5_1_7:112092117-112092201:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	565.2886962890625	2	565.291171	1128.56779	0.38729	0.00021893	-3.7717	-0.0021321	-3.3844	-0.0019132	565.2887251029701	72.382	0.65744	72.101	71.807	72.465	-0.28124					43	16	4	0	0	0	0.80342	1	8771	8771		39.021	5.5285	1	1565300			89974	14348	62582	62684	100177	100177					0.008647592363558942
YCLYNIFSVY	10	Unmodified	_YCLYNIFSVY_					0	0	0			REV__ENSG00000130876|ENST00000253188|SLC7A10	REV__ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	428.87066650390625	3	428.870492	1283.58965	0.60691	0.00026029	-0.78764	-0.00033779	-0.18072	-7.7506E-05	428.87023194734195	36.907	1.352	36.714	36.335	37.687	-0.193					113	34	4	0	0	0	1.0344	1	2952	2952		41.427	0.34655	1	12673000	+		89975	23165	62583	62685	100178	100178					-0.04080480805737352
YCLYNIFSVY	10	Unmodified	_YCLYNIFSVY_					0	0	0			REV__ENSG00000130876|ENST00000253188|SLC7A10	REV__ENSG00000130876|ENST00000253188|SLC7A10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	428.8707275390625	3	428.870492	1283.58965	1.6771	0.00071925	-1.9479	-0.0008354	-0.27083	-0.00011615	428.8697320031418	36.713	1.7492	36.504	36.121	37.87	-0.2092					125	44	4	0	0	0	0.96822	1	2907	2907		49.536	6.1175	1	9378100	+		89976	23165	62583	62685	100179	100179					-0.04080480805737352
YCNVNAGH	8	Unmodified	_YCNVNAGH_					0	0	0			REV__ENSG00000146809|ENST00000451215|ASB15	REV__ENSG00000146809|ENST00000451215|ASB15	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	439.2664794921875	2	439.184694	876.354836	0.56731	0.00024916	1.5262	0.00067026	2.0935	0.00091942	439.184748568916	43.329	0.14615	43.359	43.267	43.413	0.030823					5	3	2	0	0	0	0.027866	1	3998	3998		42.474	25.109	1	33835	+		89977	24510	62584	62686	100180	100180					-0.08828733770792496
YCQGLGQLSV	10	Unmodified	_YCQGLGQLSV_					0	0	0		ENST00000553497.1_1_14:70082246-70082456:+|nuORF	ENST00000553497.1_1_14:70082246-70082456:+|nuORF	ENST00000553497.1_1_14:70082246-70082456:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	534.7821044921875	2	534.263142	1066.51173	-0.68928	-0.00036825	-2.0681	-0.0011049	-2.7573	-0.0014731	534.2619110461856	41.477	0.34866	41.25	41.006	41.355	-0.2278					22	8	3	0	0	0	0.03519	1	3630	3630		42.864	0	1	170100			89978	16638	62585	62687	100181	100181					-0.0188649367112248
YCRQHSPEGEG	11	Unmodified	_YCRQHSPEGEG_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.81842041015625	3	421.512138	1261.51458	-0.17015	-7.1719E-05	0.10308	4.3449E-05	-0.067068	-2.827E-05	421.5119399334044	28.294	0.85068	28.142	27.847	28.698	-0.15195					32	20	2	0	0	0	0.024756	1	1578	1578		32.034	12.407	1	94638			89979	7259	62586	62688	100182	100182					-0.1057127028427658
YCSASFPKMGY	11	Carbamidomethyl (C)	_YC(Carbamidomethyl (C))SASFPKMGY_	YC(1)SASFPKMGY		YC(44)SASFPKMGY		0	1	0			REV__ENST00000487639.1_1_2:113588742-113591137:-|nuORF	REV__ENST00000487639.1_1_2:113588742-113591137:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.5215148925781	3	437.522986	1309.54713	0.35113	0.00015363	-2.9144	-0.0012751	-2.5633	-0.0011215	437.52169425801134	32.33	0.597	32.137	31.899	32.496	-0.19261					37	13	4	0	0	0	0.96926	1	2214	2214		43.651	11.617	1	702430	+		89980	33615	62587	62689	100183	100183	443				-0.0952619920565212
YCSASFPKMGY	11	Carbamidomethyl (C)	_YC(Carbamidomethyl (C))SASFPKMGY_					0	1	0			REV__ENST00000487639.1_1_2:113588742-113591137:-|nuORF	REV__ENST00000487639.1_1_2:113588742-113591137:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	437.522986	1309.54713	0.35113	0.00015363	-2.9144	-0.0012751	-2.5633	-0.0011215	437.52169425801134	32.33	0.597	32.137	31.899	32.496	-0.19261	0.078651	-0.00034704	NaN	43.651	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	702430	+		89981	33615	62587	62689			443				-0.0952619920565212
YCYSPNSP	8	Unmodified	_YCYSPNSP_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.75128173828125	2	465.686736	929.358918	-0.44751	-0.0002084	2.1559	0.001004	1.7083	0.00079555	465.6875319343838	29.649	0.20263	29.652	29.469	29.672	0.0031357					6	4	2	0	0	0	0.027866	1	1825	1825		60.294	24.676	1	67631	+		89982	28801	62588	62690	100184	100184					-0.10858689067731575
YDADPAHHRGT	11	Unmodified	_YDADPAHHRGT_					0	0	0		nc|ENSG00000283703|P0DP72|VSIG10L2;ENSG00000283703|ENST00000686984|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	414.559814453125	3	413.854892	1238.54285	-0.28728	-0.00011889	0.15827	6.5502E-05	-0.12901	-5.339E-05	413.8548745550233	26.967	0.76348	26.811	26.544	27.307	-0.15664					34	17	3	0	0	0	0.024789	1	1392	1392		26.75	13.242	1	407290			89983	11091	62589	62691	100185	100185					-0.06688204312695234
YDFLSNTLY	9	Unmodified	_YDFLSNTLY_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	568.2684326171875	2	568.268947	1134.52334	-0.13926	-7.9135E-05	-0.013165	-7.4815E-06	-0.15242	-8.6616E-05	568.2687275483446	76.376	1.1029	76.108	75.704	76.807	-0.26806					58	26	4	0	0	0	0.16638	1	9053	9053		95.815	26.188	1	1095700	+		89984	23290	62590	62692	100186	100186					-0.03853973376112663
YDHRLQSGF	9	Unmodified	_YDHRLQSGF_					0	0	0			REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	REV__BSN|p.L2766Pfs*50|1|0.13|ENSG00000164061|chr3:49657848-49657849|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	561.2698974609375	2	561.76998	1121.52541	-0.24373	-0.00013692	0.72593	0.00040781	0.48221	0.00027089	561.7704764795494	26.09	1.6161	25.922	25.7	27.317	-0.16816					125	41	4	0	0	0	0.024323	1	1341	1341		63.306	17.354	1	109860000	+		89985	19221	62591	62693	100187	100187					-0.03049499847656989
YDKYDFLI	8	Unmodified	_YDKYDFLI_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	538.802734375	2	538.768583	1075.52261	-0.4422	-0.00023824	-1.4202	-0.00076517	-1.8624	-0.0010034	538.7666453502502	94.148	0.27714	94.148	93.967	94.244	0					15	6	3	0	0	0	0.027866	1	11970	11970		102.77	25.927	1	58484			89986	3717	62592	62694	100188	100188					-0.012127680251751372
YDLAISVALQW	11	Unmodified	_YDLAISVALQW_					0	0	0		ENSG00000188674|ENST00000341287|C2orf80	ENSG00000188674|ENST00000341287|C2orf80	ENSG00000188674|ENST00000341287|C2orf80	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	639.8434448242188	2	639.840071	1277.66559	0.62354	0.00039897	4.104	0.0026259	4.7276	0.0030249	640.3446580883069	100.07	0.55721	99.941	99.64	100.2	-0.12503					35	18	2	0	0	0	0.87847	1	12417	12417		52.937	0	1	1115100			89987	9739	62593	62695	100189	100189					0.03786239366058908
YDLALVQEV	9	Unmodified	_YDLALVQEV_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2796020507812	2	525.279315	1048.54408	-0.92169	-0.00048414	0.079349	4.1681E-05	-0.84234	-0.00044246	525.2790314181227	78.777	1.4633	78.777	78.323	79.786	0					66	34	4	0	0	0	0.18994	1	9774	9774		90.601	0	1	1194900			89988	7756	62594	62696	100190	100190					0.02174617003538515
YDLALVQEV	9	Unmodified	_YDLALVQEV_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2799072265625	2	525.279315	1048.54408	-0.3816	-0.00020045	-0.06235	-3.2751E-05	-0.44395	-0.0002332	525.2792729574229	78.928	0.62343	78.736	78.549	79.172	-0.1921					47	14	5	0	0	0	0.10464	1	9751	9751		109.48	0	1	1305200			89989	7756	62594	62696	100191	100191					0.02174617003538515
YDLKEGKL	8	Unmodified	_YDLKEGKL_					0	0	0			REV__ENSG00000104866|ENST00000221462|PPP1R37	REV__ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	483.26910400390625	2	483.26875	964.522947	-0.41707	-0.00020156	0.67896	0.00032812	0.26189	0.00012656	483.26912384690826	83.13	1.507	83.13	82.793	84.3	0					95	34	5	0	0	0	0.44658	1	10426	10426		90.777	5.8611	1	10967000	+		89990	21474	62595	62697	100192	100192					0.03926651694678185
YDLKEGKL	8	Unmodified	_YDLKEGKL_					0	0	0			REV__ENSG00000104866|ENST00000221462|PPP1R37	REV__ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	483.2699890136719	2	483.26875	964.522947	0.73448	0.00035495	-0.43749	-0.00021142	0.29699	0.00014353	483.26860464900534	83.199	1.5415	83.108	82.787	84.328	-0.090454					96	35	5	0	0	0	0.6248	1	10342	10342		73.975	2.679	1	10385000	+		89991	21474	62595	62697	100193	100193					0.03926651694678185
YDLPSVVKL	9	Unmodified	_YDLPSVVKL_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.2994384765625	2	517.30005	1032.58555	-0.17278	-8.9382E-05	-0.6613	-0.00034209	-0.83408	-0.00043147	517.2996675560152	67.943	1.26	67.962	67.466	68.726	0.018921					84	32	4	0	0	0	0.17845	1	8035	8035		93.143	2.3666	1	8216800	+		89992	25874	62596	62698	100194	100194					0.07055797762859584
YDLPSVVKL	9	Unmodified	_YDLPSVVKL_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	517.30005	1032.58555	0.55897	0.00028915	-4.9774	-0.0025748	-4.4185	-0.0022857	517.2982046666244	68	0.7327	67.745	67.455	68.188	-0.25516	-0.074434	-0.0043199	NaN	93.143	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330380	+		89993	25874	62596	62698							0.07055797762859584
YDLPSVVKL	9	Unmodified	_YDLPSVVKL_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	517.30005	1032.58555	0.14994	7.7566E-05	2.0651	0.0010683	2.2151	0.0011459	517.2989798281426	67.927	0.77505	67.689	67.334	68.109	-0.23814	-0.13006	0.0029664	NaN	93.143	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242550	+		89994	25874	62596	62698							0.07055797762859584
YDPSGRPQDGY	11	Unmodified	_YDPSGRPQDGY_					0	0	0			REV__ENST00000566034.1_1_16:1033566-1035383:+|nuORF	REV__ENST00000566034.1_1_16:1033566-1035383:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	419.1659240722656	3	418.851036	1253.53128	0.26291	0.00011012	4.2482	0.0017794	4.5111	0.0018895	418.852883771356	22.968	0.46829	22.767	22.546	23.014	-0.20193					17	9	3	0	0	0	0.024742	1	869	869		53.597	16.089	1	26123	+		89995	19810	62597	62699	100195	100195					-0.0853444612664589
YDPSGRPQDGY	11	Unmodified	_YDPSGRPQDGY_					0	0	0			REV__ENST00000566034.1_1_16:1033566-1035383:+|nuORF	REV__ENST00000566034.1_1_16:1033566-1035383:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	418.851036	1253.53128	1.6285	0.0006821	1.9461	0.00081512	3.5746	0.0014972	418.85195789855885	23.111	0.45669	22.92	22.711	23.167	-0.19117	0.041505	-0.0011313	NaN	45.908	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29733	+		89996	19810	62597	62699							-0.0853444612664589
YDPYLNIYF	9	Unmodified	_YDPYLNIYF_					0	0	0			REV__nc|ENSG00000171189|P39086-2|GRIK1	REV__nc|ENSG00000171189|P39086-2|GRIK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	403.1932373046875	3	403.193852	1206.55973	-0.37914	-0.00015287	-2.4299	-0.00097973	-2.8091	-0.0011326	403.1925886251524	30.363	1.2922	30.213	29.835	31.127	-0.14952					72	30	3	0	0	0	0.94809	1	1909	1909		22.58	0.89391	1	1733800	+		89997	26552	62598	62700	100196	100196					-0.03529096479428517
YDPYLNIYF	9	Unmodified	_YDPYLNIYF_					0	0	0			REV__nc|ENSG00000171189|P39086-2|GRIK1	REV__nc|ENSG00000171189|P39086-2|GRIK1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	403.193852	1206.55973	0.17629	7.108E-05	-2.8335	-0.0011424	-2.6572	-0.0010714	403.19241735805883	30.491	1.3195	30.247	29.862	31.182	-0.24415	0.016889	-0.00027727	NaN	22.58	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1713000	+		89998	26552	62598	62700							-0.03529096479428517
YDPYLNIYF	9	Unmodified	_YDPYLNIYF_					0	0	0			REV__nc|ENSG00000171189|P39086-2|GRIK1	REV__nc|ENSG00000171189|P39086-2|GRIK1	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	403.193852	1206.55973	-0.37914	-0.00015287	-2.4299	-0.00097973	-2.8091	-0.0011326	403.1925886251524	30.363	1.2922	30.213	29.835	31.127	-0.14952	-0.016889	0.00021084	NaN	22.58	72	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1733800	+		89999	26552	62598	62700							-0.03529096479428517
YDSLSEMQL	9	Unmodified	_YDSLSEMQL_					0	0	0		ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.302978515625	2	543.244615	1084.47468	-1.3285	-0.00072172	1.8833	0.0010231	0.55477	0.00030138	543.2462002239077	74.45	0.21001	74.46	74.355	74.565	0.0096512					5	4	2	0	0	0	0.017891	1	9035	9035		96.19	3.9998	1	34753			90000	1108	62599	62701	100197	100197					-0.06418210007541347
YDTCCSQYY	9	Unmodified	_YDTCCSQYY_					0	0	0			REV__ENSG00000109072|ENST00000226218|VTN	REV__ENSG00000109072|ENST00000226218|VTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.1971435546875	2	573.19935	1144.38415	-0.13566	-7.7762E-05	-3.464	-0.0019856	-3.5997	-0.0020633	573.1972119067755	33.002	0.97461	32.771	32.423	33.397	-0.23107					63	23	4	0	0	0	0.52323	1	2342	2342		57.811	4.7223	1	2951600	+		90001	21778	62600	62702	100198	100198					-0.18227002327466835
YDTQLQAVK	9	Unmodified	_YDTQLQAVK_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.284912109375	2	533.282389	1064.55022	1.3288	0.00070863	2.8696	0.0015303	4.1984	0.0022389	533.283841821793	16.834	0.8735	16.68	16.485	17.358	-0.15376					31	17	2	0	0	0	0.96322	1	140	140		27.882	2.4321	1	287690	+		90002	26893	62601	62703	100199	100199					0.02053135235018999
YDTSYFSIY	9	Unmodified	_YDTSYFSIY_					0	0	0			REV__ENSG00000122584|ENST00000405863|NXPH1	REV__ENSG00000122584|ENST00000405863|NXPH1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.7518920898438	2	579.75313	1157.49171	-0.06192	-3.5898E-05	0.046948	2.7218E-05	-0.014972	-8.6801E-06	579.7531772206706	74.928	1.1905	74.745	74.309	75.5	-0.18279					88	28	6	0	0	0	0.31247	1	8806	8806		73.975	7.5455	1	18901000	+		90003	22654	62602	62704	100200	100200					-0.08073966130086774
YDVYCVKI	8	Unmodified	_YDVYCVKI_					0	0	0			REV__ENSG00000196116|ENST00000355295|TDRD7	REV__ENSG00000196116|ENST00000355295|TDRD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	501.2919921875	2	501.751879	1001.4892	-0.97316	-0.00048829	1.6504	0.00082807	0.6772	0.00033979	501.75101704162006	45.633	0.16986	45.431	45.358	45.528	-0.20226					6	4	2	0	0	0	0.027866	1	4348	4348		47.916	18.766	1	85082	+		90004	28127	62603	62705	100201	100201					-0.011480930687298496
YDYEFTLCLQ	10	Unmodified	_YDYEFTLCLQ_					0	0	0		ENST00000522653.5_1_5:133481849-133482209:+|nuORF	ENST00000522653.5_1_5:133481849-133482209:+|nuORF	ENST00000522653.5_1_5:133481849-133482209:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	647.7861328125	2	647.786647	1293.55874	0.86446	0.00055998	-2.217	-0.0014361	-1.3525	-0.00087616	647.7852078522478	52.907	0.97212	52.648	52.326	53.298	-0.25838					64	24	5	0	0	0	1.0508	1	5500	5500		39.253	6.4404	1	3482400			90005	16031	62604	62706	100202	100202					-0.07629678910620896
YEAKLEAVAL	10	Unmodified	_YEAKLEAVAL_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	553.32177734375	2	553.808239	1105.60193	0.2692	0.00014909	-0.46557	-0.00025784	-0.19637	-0.00010875	553.8078924360536	67.85	0.49644	67.85	67.682	68.179	0					31	12	3	0	0	0	0.03519	1	8149	8149		47.96	0	1	972850			90006	6006	62605	62707	100203	100203					0.05334878928965736
YEAVPLLLR	9	Unmodified	_YEAVPLLLR_					0	0	0			REV__ENST00000488719.1_1_22:30975561-30975981:-|nuORF	REV__ENST00000488719.1_1_22:30975561-30975981:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.3231811523438	2	537.321317	1072.62808	-0.28087	-0.00015092	3.3175	0.0017825	3.0366	0.0016316	537.3229778271565	95.534	0.74078	95.397	95.112	95.853	-0.13689					28	16	2	0	0	0	0.23085	1	11788	11788		84.916	15.288	1	340260	+		90007	21035	62606	62708	100204	100204					0.09467192891088416
YEDNAHCVW	9	Unmodified	_YEDNAHCVW_					0	0	0		nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;nc|ENSG00000183117|Q96PZ7-4|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-3|CSMD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.7764892578125	2	568.726923	1135.43929	-0.16891	-9.6062E-05	-4.0277	-0.0022907	-4.1966	-0.0023867	568.7245229704936	62.31	0.46976	62.096	61.813	62.283	-0.21375					19	11	2	0	0	0	0.024541	1	6985	6985		29.15	2.4566	1	400390			90008	9202	62607	62709	100205	100205					-0.12300827744684284
YEEGSNRGAY	10	Unmodified	_YEEGSNRGAY_					0	0	0		nc|ENSG00000086717|O14829-5|PPEF1;nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-5|PPEF1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	573.2777099609375	2	573.246535	1144.47852	-0.31206	-0.00017889	4.457	0.002555	4.1449	0.0023761	573.2489987652507	26.091	1.0659	25.923	25.7	26.766	-0.16816					66	28	3	0	0	0	0.03519	1	1275	1275		34.173	6.2903	1	688570			90009	1823	62608	62710	100206	100206					-0.08794404189461602
YEERILQKEA	10	Unmodified	_YEERILQKEA_					0	0	0			REV__ENST00000490034.5_1_1:21012587-21024931:-|nuORF	REV__ENST00000490034.5_1_1:21012587-21024931:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.58624267578125	3	426.894465	1277.66157	1.1531	0.00049226	-3.0734	-0.001312	-1.9203	-0.00081976	426.89318723446445	18.312	0.29592	18.156	18.05	18.346	-0.15637					8	5	2	0	0	0	0.03519	1	311	311		43.651	4.8972	1	10939	+		90010	22336	62609	62711	100207	100207					0.03384149872317721
YEERLARA	8	Unmodified	_YEERLARA_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.29754638671875	2	504.267073	1006.51959	-0.6701	-0.00033791	0.31605	0.00015937	-0.35406	-0.00017854	504.7684882942115	36.925	0.7034	36.705	36.528	37.231	-0.2195					22	17	2	0	0	0	0.027866	1	2934	2934		27.882	0	1	83033	+		90011	23340	62610	62712	100208	100208					0.016594016406429546
YEGTDEAYI	9	Unmodified	_YEGTDEAYI_					0	0	0			REV__nc|ENSG00000164830|Q8N573-2|OXR1	REV__nc|ENSG00000164830|Q8N573-2|OXR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2776489257812	2	530.727112	1059.43967	-0.40599	-0.00021547	-2.0545	-0.0010904	-2.4605	-0.0013058	530.7259144044863	57.734	0.45679	57.544	57.332	57.789	-0.19017					28	11	3	0	0	0	0.024412	1	6334	6334		31.955	8.9124	1	1220100	+		90012	36870	62611	62713	100209	100209					-0.08767129543844021
YEGTDEAYI	9	Unmodified	_YEGTDEAYI_					0	0	0			REV__nc|ENSG00000164830|Q8N573-2|OXR1	REV__nc|ENSG00000164830|Q8N573-2|OXR1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.727112	1059.43967	-0.58915	-0.00031268	-2.2567	-0.0011977	-2.8459	-0.0015104	530.7257320402923	57.352	0.29826	57.447	57.243	57.541	0.095306	-0.085482	-0.00014309	NaN	31.955	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	800780	+		90013	36870	62611	62713							-0.08767129543844021
YEHLIRNTW	9	Unmodified	_YEHLIRNTW_					0	0	0			REV__nc|ENSG00000001631|O00522-3|KRIT1	REV__nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	411.2135314941406	3	411.212128	1230.61456	-0.65738	-0.00027032	0.54456	0.00022393	-0.11281	-4.639E-05	411.2122738186547	44.561	0.81581	44.317	43.94	44.756	-0.2444					61	21	4	0	0	0	0.74711	1	4170	4170		42.864	4.1502	1	3110200	+		90014	19761	62612	62714	100210	100210					0.008473351118254868
YEHLIRNTW	9	Unmodified	_YEHLIRNTW_					0	0	0			REV__nc|ENSG00000001631|O00522-3|KRIT1	REV__nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	411.21356201171875	3	411.212128	1230.61456	-0.893	-0.00036721	0.69226	0.00028466	-0.20074	-8.2548E-05	411.21236037950695	44.554	0.74967	44.343	44.081	44.831	-0.21144					59	19	4	0	0	0	0.56934	1	4159	4159		54.776	2.6091	1	2824400	+		90015	19761	62612	62714	100211	100211					0.008473351118254868
YEITDTQF	8	Unmodified	_YEITDTQF_					0	0	0			REV__ENSG00000154760|ENST00000285013|SLFN13	REV__ENSG00000154760|ENST00000285013|SLFN13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.326171875	2	508.732197	1015.44984	-0.16703	-8.4971E-05	2.3387	0.0011897	2.1716	0.0011048	508.7334812450302	56.582	0.69868	56.415	56.124	56.823	-0.1672					22	17	2	0	0	0	0.027866	1	6157	6157		50.025	20.183	1	104640	+		90016	24973	62613	62715	100212	100212					-0.057265218186103084
YEIWKVEV	8	Unmodified	_YEIWKVEV_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	532.7840576171875	2	533.2844	1064.55425	-0.55283	-0.00029482	1.3258	0.00070705	0.773	0.00041223	533.2852638923615	45.622	1.6361	45.665	45.344	46.98	0.04388					130	46	5	0	0	0	0.027866	1	4366	4366		104.75	22.506	1	167230000	+		90017	24805	62614	62716	100213	100213					0.024552247287601858
YEKIKKDPA	9	Unmodified	_YEKIKKDPA_					0	0	0		ENST00000592056.5_1_19:45543470-45556151:+|nuORF;nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.2891235351562	2	546.308406	1090.60226	-0.72554	-0.00039637	-3.8308	-0.0020928	-4.5563	-0.0024892	546.3069896777281	57.185	0.32162	57.017	56.858	57.18	-0.1672					21	8	4	0	0	0	0.024477	1	6236	6236		35.618	15.622	1	273530			90018	2609	62615	62717	100214	100214					0.06058298648804339
YEKIKKDPA	9	Unmodified	_YEKIKKDPA_					0	0	0		ENST00000592056.5_1_19:45543470-45556151:+|nuORF;nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	ENST00000592056.5_1_19:45543470-45556151:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.308406	1090.60226	-0.66069	-0.00036094	-2.8924	-0.0015802	-3.5531	-0.0019411	546.3070041554853	57.29	0.35885	57.065	56.887	57.246	-0.2248	0.023867	0.00044835	NaN	35.618	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182930			90019	2609	62615	62717							0.06058298648804339
YEKKPNVF	8	Unmodified	_YEKKPNVF_					0	0	0		nc|ENSG00000156011|Q9NYI0-3|PSD3;PSD3|p.H1010Lfs*13|1|0.07|ENSG00000156011|chr8:18535863-18535864|-/TGGTCATGGAGCAAAATAGG|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000518315.5_1_8:18393255-18632402:-|nuORF	nc|ENSG00000156011|Q9NYI0-3|PSD3	nc|ENSG00000156011|Q9NYI0-3|PSD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7745361328125	2	512.776742	1023.53893	-0.6074	-0.00031146	-3.7671	-0.0019317	-4.3745	-0.0022432	512.7747891142708	48.027	1.0843	47.751	47.421	48.505	-0.27598					89	29	6	0	0	0	0.50239	2	4732	4708;4732		85.359	8.5853	1	11535000			90020	6505	62616	62718	100215;100216	100216					0.028103579315711613
YEKVEPLL	8	Unmodified	_YEKVEPLL_					0	0	0		nc|ENSG00000188452|Q49MI3-3|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL;nc|ENSG00000188452|Q49MI3-7|CERKL;nc|ENSG00000188452|Q49MI3-5|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	nc|ENSG00000188452|Q49MI3-3|CERKL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	495.7803649902344	2	495.778951	989.543348	0.4742	0.0002351	2.6687	0.0013231	3.1429	0.0015582	495.7801047992268	89.182	0.79597	89.182	88.809	89.605	0					54	18	4	0	0	0	0.6248	1	11273	11273		73.975	2.5968	1	1613400			90021	9720	62617	62719	100217	100217					0.04815822354487409
YELSHFMGF	9	Unmodified	_YELSHFMGF_					0	0	0			REV__ENST00000394123.7_1_5:151183997-151184060:+|nuORF	REV__ENST00000394123.7_1_5:151183997-151184060:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	566.3052978515625	2	565.75241	1129.49027	0.075082	4.2478E-05	2.9826	0.0016874	3.0577	0.0017299	565.753723731014	80.918	0.31668	80.68	80.45	80.767	-0.23783					12	7	2	0	0	0	0.024535	1	9705	9705		33.516	23.25	1	84385	+		90022	31661	62618	62720	100218	100218					-0.0692987869983881
YENEKPYKK	9	Unmodified	_YENEKPYKK_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	400.2071533203125	3	400.208273	1197.60299	0.98996	0.00039619	-3.5034	-0.0014021	-2.5135	-0.0010059	400.2067684535851	23.838	1.0679	23.658	23.395	24.463	-0.17989					56	24	4	0	0	0	0.49102	1	984	984		59.931	3.497	1	1157100	+		90023	22498	62619	62721	100219	100219					0.012090932978253477
YENEKPYKK	9	Unmodified	_YENEKPYKK_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	400.208273	1197.60299	0.85121	0.00034066	-3.6217	-0.0014494	-2.7705	-0.0011088	400.2067293729772	23.997	0.90838	23.781	23.51	24.418	-0.2151	0.070011	0.00045597	NaN	59.931	64	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	974330	+		90024	22498	62619	62721							0.012090932978253477
YENEKPYKK	9	Unmodified	_YENEKPYKK_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		3	400.208273	1197.60299	0.98996	0.00039619	-3.5034	-0.0014021	-2.5135	-0.0010059	400.2067684535851	23.838	1.0679	23.658	23.395	24.463	-0.17989	-0.053231	0.00059797	NaN	59.931	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1157100	+		90025	22498	62619	62721							0.012090932978253477
YENEKPYKK	9	Unmodified	_YENEKPYKK_					0	0	0			REV__ENSG00000119912|ENST00000265986|IDE	REV__ENSG00000119912|ENST00000265986|IDE	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		3	400.208273	1197.60299	1.5026	0.00060136	-4.4833	-0.0017943	-2.9807	-0.0011929	400.20647986788117	23.876	0.91467	23.695	23.371	24.285	-0.18089	-0.01678	-0.00057851	NaN	59.931	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1322600	+		90026	22498	62619	62721							0.012090932978253477
YESDFKPY	8	Unmodified	_YESDFKPY_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.2879028320312	2	524.73474	1047.45493	0.32768	0.00017194	1.0682	0.00056051	1.3958	0.00073245	524.7377227379308	53.244	0.53958	52.985	52.723	53.262	-0.25838					29	13	3	0	0	0	0.027866	1	5545	5545		57.811	32.361	1	339310			90027	6234	62620	62722	100220	100220					-0.06690217955997468
YETPKRALK	9	Unmodified	_YETPKRALK_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.3222045898438	2	553.321848	1104.62914	0.057393	3.1757E-05	-1.0249	-0.00056711	-0.96753	-0.00053536	553.3210783375285	68.103	0.84832	68.103	67.792	68.641	0					39	15	3	0	0	0	0.70156	1	8159	8159		45.972	3.108	1	2615100			90028	5706	62621	62723	100221	100221					0.08101407259982807
YEWMLVILL	9	Unmodified	_YEWMLVILL_					0	0	0		ENST00000393452.7_1_14:90509523-90509682:+|nuORF	ENST00000393452.7_1_14:90509523-90509682:+|nuORF	ENST00000393452.7_1_14:90509523-90509682:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	590.8101196289062	2	590.327753	1178.64095	-0.56307	-0.0003324	2.6896	0.0015877	2.1265	0.0012553	590.3292301008092	59.8	0.51213	59.552	59.211	59.723	-0.24842					17	12	2	0	0	0	0.024506	1	6564	6564		30.504	3.7075	1	183010			90029	13449	62622	62724	100222	100222					0.05877887958968131
YEWMLVILL	9	Unmodified	_YEWMLVILL_					0	0	0		ENST00000393452.7_1_14:90509523-90509682:+|nuORF	ENST00000393452.7_1_14:90509523-90509682:+|nuORF	ENST00000393452.7_1_14:90509523-90509682:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	590.327753	1178.64095	0.72317	0.0004269	2.4646	0.0014549	3.1878	0.0018819	590.3291851801387	59.78	0.38908	59.583	59.339	59.728	-0.19742	0.060771	-0.00036192	NaN	30.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137030			90030	13449	62622	62724							0.05877887958968131
YEWMLVILL	9	Unmodified	_YEWMLVILL_					0	0	0		ENST00000393452.7_1_14:90509523-90509682:+|nuORF	ENST00000393452.7_1_14:90509523-90509682:+|nuORF	ENST00000393452.7_1_14:90509523-90509682:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	590.327753	1178.64095	-0.14313	-8.4496E-05	3.3469	0.0019758	3.2038	0.0018913	590.3294871606466	59.607	0.27103	59.431	59.321	59.592	-0.1761	-0.090796	0.00067977	NaN	30.504	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153230			90031	13449	62622	62724							0.05877887958968131
YEYCVIMSN	9	Oxidation (M)	_YEYCVIM(Oxidation (M))SN_		YEYCVIM(1)SN		YEYCVIM(48)SN	0	0	1			REV__ENST00000420294.1_2_2:99529371-99552551:-|nuORF	REV__ENST00000420294.1_2_2:99529371-99552551:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.2318725585938	2	569.233193	1136.45183	0.11135	6.3382E-05	-2.9064	-0.0016544	-2.795	-0.001591	569.2313737718794	76.586	0.91885	76.318	75.968	76.887	-0.26806					69	21	5	0	0	0	0.67687	1	9117	9117		47.657	15.702	1	3821000	+		90032	32160	62623	62725	100223	100223		891			-0.11093552396664563
YEYHEDFYK	9	Unmodified	_YEYHEDFYK_					0	0	0			REV__ENSG00000123975|ENST00000314355|CKS2	REV__ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	431.8525390625	3	431.852266	1292.53497	-0.7648	-0.00033028	0.52006	0.00022459	-0.24474	-0.00010569	431.85247151761774	45.974	1.8951	45.823	45.512	47.407	-0.15157					170	52	5	0	0	0	0.59099	1	4509	4509		51.193	0	1	17548000	+		90033	22720	62624	62726	100224	100224					-0.09959776352820882
YEYRGESW	8	Unmodified	_YEYRGESW_					0	0	0			REV__ENST00000549774.5_1_12:42720030-42749025:+|nuORF	REV__ENST00000549774.5_1_12:42720030-42749025:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.810791015625	2	545.235439	1088.45632	-0.17115	-9.3319E-05	-3.8901	-0.002121	-4.0613	-0.0022144	545.2331630636534	70.001	0.74042	69.75	69.441	70.182	-0.25063					37	17	3	0	0	0	0.027866	1	8163	8163		29.15	10.825	1	702620	+		90034	23434	62625	62727	100225	100225					-0.08436583867228364
YFAAILDIG	9	Unmodified	_YFAAILDIG_					0	0	0			REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	REV__DIP2C|p.D1428Efs*13|1|0.2|ENSG00000151240|chr10:283282-283282|A/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	491.7661437988281	2	491.765843	981.517133	2.2906	0.0011264	-1.3621	-0.00066985	0.92846	0.00045659	491.7649586623359	18.583	0.68783	18.583	18.333	19.021	0					25	13	3	0	0	0	1.0051	1	308	308		19.36	0	1	80472	+		90035	19676	62626	62728	100226	100226					0.025635531829948377
YFCIMVTL	8	Unmodified	_YFCIMVTL_					0	0	0		sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	494.2602844238281	2	495.245375	988.476197	0.76855	0.00038062	3.7774	0.0018707	4.546	0.0022514	495.24723358242306	83.217	0.76614	83.127	82.83	83.596	-0.090454					32	17	3	0	0	0	0.027866	1	10368	10368		21.702	0	1	276870			90036	37950	62627	62729	100227	100227					-0.018502474524780155
YFDASISL	8	Unmodified	_YFDASISL_					0	0	0			REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	REV__ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.31298828125	2	458.226551	914.438549	-0.0024397	-1.1179E-06	1.1351	0.00052011	1.1326	0.000519	458.2284712553099	44.116	0.65656	44.153	43.853	44.509	0.0369					42	18	3	0	0	0	0.027866	1	4186	4186		26.796	0	1	670900	+		90037	21482	62628	62730	100228	100228					-0.022092991220915792
YFDVPVTSPT	10	Unmodified	_YFDVPVTSPT_					0	0	0		FAM135B|p.N428Y|1|0.25|ENSG00000147724|chr8:138153193-138153193|T/A|missense_variant	FAM135B|p.N428Y|1|0.25|ENSG00000147724|chr8:138153193-138153193|T/A|missense_variant	FAM135B|p.N428Y|1|0.25|ENSG00000147724|chr8:138153193-138153193|T/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	563.276611328125	2	563.276772	1124.53899	-0.90856	-0.00051177	0.22095	0.00012445	-0.68761	-0.00038731	563.2768894849044	81.695	3.3298	81.721	81.25	84.579	0.025711					226	78	4	0	0	0	0.60198	1	10133	10133		76.774	0	1	23997000			90038	17632	62629	62731	100229	100229					-0.01829686859082358
YFEVEIFG	8	Unmodified	_YFEVEIFG_					0	0	0		nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16;ENSG00000221926|ENST00000649191|TRIM16	nc|ENSG00000291110|Q309B1|TRIM16L	nc|ENSG00000291110|Q309B1|TRIM16L	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	501.28997802734375	2	502.242201	1002.46985	-0.5862	-0.00029442	-0.15531	-7.8004E-05	-0.74151	-0.00037242	502.24206382985744	83.071	0.68088	83.097	82.874	83.555	0.02655					21	15	2	0	0	0	0.027866	1	10325	10325		19.36	0	1	169470			90039	10621	62630	62732	100230	100230					-0.03128726087982159
YFFMVVLN	8	Unmodified	_YFFMVVLN_					0	0	0			REV__ENST00000370272.8_1_1:93826667-93826868:+|nuORF	REV__ENST00000370272.8_1_1:93826667-93826868:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.8182983398438	2	516.764789	1031.51502	0.11074	5.7228E-05	-1.2818	-0.00066239	-1.1711	-0.00060516	516.7639254414944	67.726	0.49578	67.493	67.261	67.756	-0.23376					17	11	3	0	0	0	0.027866	1	7775	7775		21.702	7.927	1	167680	+		90040	31121	62631	62733	100231	100231					0.0005280117354686809
YFFTAVLIS	9	Unmodified	_YFFTAVLIS_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	530.8135375976562	2	530.789318	1059.56408	-0.47378	-0.00025148	-1.2098	-0.00064215	-1.6836	-0.00089363	530.7884771141021	77.366	0.95757	77.366	77.125	78.082	0					40	22	2	0	0	0	0.024436	1	9630	9630		30.504	1.3336	1	294400			90041	906	62632	62734	100232	100232					0.036684127341459316
YFFTAVLIS	9	Unmodified	_YFFTAVLIS_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.789318	1059.56408	0.11308	6.0023E-05	-2.2832	-0.0012119	-2.1701	-0.0011519	530.7879855611462	77.599	1.5761	77.388	77.08	78.656	-0.21087	0.029845	-0.00078668	NaN	23.042	58	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400570			90042	906	62632	62734							0.036684127341459316
YFFTAVLIS	9	Unmodified	_YFFTAVLIS_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.789318	1059.56408	-0.33585	-0.00017826	-1.2855	-0.00068233	-1.6213	-0.00086059	530.7883577348691	77.354	1.0481	77.367	77.104	78.152	0.013504	0.0095429	0.00027248	NaN	23.042	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299880			90043	906	62632	62734							0.036684127341459316
YFGGNKKTK	9	Unmodified	_YFGGNKKTK_					0	0	0			REV__nc|ENSG00000177302|Q13472-3|TOP3A	REV__nc|ENSG00000177302|Q13472-3|TOP3A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	521.7474365234375	2	521.787641	1041.56073	-0.75055	-0.00039163	0.42696	0.00022278	-0.32359	-0.00016885	521.7876664583594	35.636	0.54073	35.421	35.1	35.641	-0.21556					27	13	3	0	0	0	0.024405	1	2710	2710		27.882	0	1	363350	+		90044	27102	62633	62735	100233	100233					0.04161162680134112
YFGIRAFKGW	10	Unmodified	_YFGIRAFKGW_					0	0	0		ENST00000374675.7_1_6:33171678-33171792:+|nuORF	ENST00000374675.7_1_6:33171678-33171792:+|nuORF	ENST00000374675.7_1_6:33171678-33171792:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	415.5598449707031	3	415.557348	1243.65021	2.6839	0.0011153	2.8096	0.0011675	5.4935	0.0022829	415.5583863752721	18.629	1.1778	18.629	18.333	19.511	0					50	23	3	0	0	0	1.1246	1	313	313		23.523	2.6855	1	153560			90045	13127	62634	62736	100234	100234					0.0381341735951537
YFGMDHNV	8	Unmodified	_YFGMDHNV_					0	0	0		nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2;R3HDM2|p.S322Yfs*60|1|0.06|ENSG00000179912|chr12:57283988-57283989|-/GT|frameshift_variant	nc|ENSG00000179912|Q9Y2K5|R3HDM2	nc|ENSG00000179912|Q9Y2K5|R3HDM2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	491.30426025390625	2	491.708002	981.401452	0.31044	0.00015264	2.6887	0.001322	2.9991	0.0014747	491.7091303170073	58.67	0.9841	58.761	58.448	59.432	0.091217					59	26	3	0	0	0	0.027866	1	6678	6678		60.294	8.9585	1	1901300			90046	8935	62635	62737	100235	100235					-0.08999293939507425
YFHADRWKWLW	11	Unmodified	_YFHADRWKWLW_					0	0	0			REV__nc|ENSG00000149564|Q96AP7-2|ESAM	REV__nc|ENSG00000149564|Q96AP7-2|ESAM	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	402.8721923828125	4	402.703115	1606.78335	0.41754	0.00016814	1.0436	0.00042025	1.4611	0.00058839	402.70353821697665	33.287	0.43803	33.056	32.835	33.273	-0.23107					14	10	2	0	0	0	0.024873	1	2352	2352		9.6461	8.1232	1	65543	+		90047	36775	62636	62738	100236	100236					0.004232367453596453
YFHHYHQQYHH	11	Unmodified	_YFHHYHQQYHH_					0	0	0		ENSG00000130054|ENST00000252338|NALF2	ENSG00000130054|ENST00000252338|NALF2	ENSG00000130054|ENST00000252338|NALF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.785400390625	3	532.900836	1595.68068	0.0041357	2.2039E-06	2.376	0.0012661	2.3801	0.0012684	532.9021423617746	23.817	0.39732	23.615	23.438	23.835	-0.20193					13	8	2	0	0	0	0.024884	1	1007	1007		6.6596	3.2509	1	30939			90048	4383	62637	62739	100237	100237					-0.09333455993396456
YFHHYHQQYHH	11	Unmodified	_YFHHYHQQYHH_					0	0	0		ENSG00000130054|ENST00000252338|NALF2	ENSG00000130054|ENST00000252338|NALF2	ENSG00000130054|ENST00000252338|NALF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	533.7852783203125	3	532.900836	1595.68068	1.5803	0.00084214	-0.15435	-8.2251E-05	1.426	0.00075989	533.2349872930299	23.675	0.42753	23.484	23.321	23.749	-0.19117					14	9	2	0	0	0	0.024886	1	964	964		10.104	4.1029	1	30787			90049	4383	62637	62739	100238	100238					-0.09333455993396456
YFIFLMVD	8	Unmodified	_YFIFLMVD_					0	0	0			REV__ENST00000550963.1_1_12:72004384-72005014:-|nuORF	REV__ENST00000550963.1_1_12:72004384-72005014:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3035278320312	2	524.264622	1046.51469	0.27278	0.00014301	-1.5171	-0.00079534	-1.2443	-0.00065233	524.2631838029969	85.133	0.28825	85.133	84.917	85.206	0					10	6	2	0	0	0	0.027866	1	10649	10649		21.702	0	1	60083	+		90050	34921	62638	62740	100239	100239					-0.006706185463372094
YFKLDERLC	9	Unmodified	_YFKLDERLC_					0	0	0			REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	594.768310546875	2	593.799891	1185.58523	-1.049	-0.00062288	0.058211	3.4565E-05	-0.99077	-0.00058832	593.799901067969	49.162	0.46519	49.162	48.934	49.399	0					24	12	3	0	0	0	0.024495	1	5074	5074		42.396	8.2236	1	331140	+		90051	24916	62639	62741	100240	100240					-0.00013945228624834272
YFLAGDGL	8	Unmodified	_YFLAGDGL_					0	0	0			REV__ENSG00000167986|ENST00000301764|DDB1	REV__ENSG00000167986|ENST00000301764|DDB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	428.2561950683594	2	428.215986	854.417419	-1.039	-0.00044492	-3.4807	-0.0014905	-4.5197	-0.0019354	428.21475455848537	44.772	0.54819	44.623	44.39	44.938	-0.1488					19	15	2	0	0	0	0.027866	1	4261	4261		57.453	20.424	1	106290	+		90052	26208	62640	62742	100241	100241					-0.01561264430938536
YFLATDMISI	10	Unmodified	_YFLATDMISI_					0	0	0		ENSG00000096093|ENST00000371068|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	ENSG00000096093|ENST00000371068|EFHC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	587.2958984375	2	587.29665	1172.57875	0.44226	0.00025974	-1.9886	-0.0011679	-1.5463	-0.00090814	587.2954195931204	73.529	0.49594	73.539	73.217	73.713	0.0096512					44	12	5	0	0	0	1.089	1	8886	8886		34.173	1.3601	1	12280000			90053	2048	62641	62743	100242	100242					-0.0006388318004155735
YFLCLLIL	8	Unmodified	_YFLCLLIL_					0	0	0		ENSG00000104043|ENST00000284509|ATP8B4;ATP8B4|p.K804Sfs*19|1|0.38|ENSG00000104043|chr15:49898132-49898132|C/-|frameshift_variant	ENSG00000104043|ENST00000284509|ATP8B4	ENSG00000104043|ENST00000284509|ATP8B4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	498.3212890625	2	499.293182	996.571812	-0.40585	-0.00020264	-0.15881	-7.9294E-05	-0.56466	-0.00028193	499.2928808601747	49.035	0.35942	48.882	48.611	48.97	-0.15277					15	9	2	0	0	0	0.027866	1	5009	5009		33.493	0	1	270960			90054	2538	62642	62744	100243	100243					0.07338848730080372
YFLQLSSL	8	Unmodified	_YFLQLSSL_					0	0	0			REV__nc|ENSG00000163156|Q9BWG6-3|SCNM1	REV__nc|ENSG00000163156|Q9BWG6-3|SCNM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	485.76470947265625	2	485.765843	969.517133	0.036975	1.7961E-05	-3.7312	-0.0018125	-3.6943	-0.0017945	485.764239588403	99.214	0.71152	99.21	98.855	99.567	-0.0038757					28	15	3	0	0	0	0.97924	1	12619	12619		40.573	1.7665	1	116630	+		90055	25540	62643	62745	100244	100244					0.031155531829995198
YFLVFVFIY	9	Unmodified	_YFLVFVFIY_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	605.3051147460938	2	605.830986	1209.64742	-0.71636	-0.00043399	2.1603	0.0013088	1.444	0.0008748	605.8327525848479	61.498	0.41872	61.284	61.125	61.544	-0.21375					11	9	2	0	0	0	0.024389	1	6890	6890		49.211	19.369	1	126910			90056	5484	62644	62746	100245	100245					0.05098149182003908
YFLVFVFIY	9	Unmodified	_YFLVFVFIY_					0	0	0		ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	605.304443359375	2	605.830986	1209.64742	-1.2239	-0.0007415	3.6514	0.0022121	2.4275	0.0014706	605.8334144375438	61.344	0.37485	61.167	60.997	61.372	-0.1761					12	8	2	0	0	0	0.024475	1	6872	6872		39.021	19.759	1	150470			90057	5484	62644	62746	100246	100246					0.05098149182003908
YFMKHSKV	8	Unmodified	_YFMKHSKV_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-13|ANK1;ENST00000524227.5_1_8:41519075-41530298:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MSMS	OPSCC_39_ClassI_Rep-3	3	520.2783203125	2	520.273312	1038.53207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.86	1	104.86	104.36	105.36	-0.0015945								0	0	0	0.81261	1	13382	13382		33.516	1.9858	1				90058	18041	62645	62747	100247	100247					0.014347217793329037
YFNDDSIETR	10	Unmodified	_YFNDDSIETR_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	420.5230407714844	3	420.522808	1258.5466	0.82383	0.00034644	0.044933	1.8895E-05	0.86876	0.00036533	420.52282197612703	19.43	0.74376	19.23	18.958	19.701	-0.2001					45	14	4	0	0	0	1.1228	1	430	430		22.562	0.87584	1	978940			90059	10600	62646	62748	100248	100248					-0.07233579329476925
YFNKLKRA	8	Unmodified	_YFNKLKRA_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.3052368164062	2	520.306001	1038.59745	0.09195	4.7842E-05	-1.8074	-0.00094042	-1.7155	-0.00089257	520.3049806038833	93.605	1.1323	93.461	92.958	94.09	-0.1441					56	25	3	0	0	0	0.88442	1	11504	11504		52.299	2.2746	1	1772100	+		90060	22782	62647	62749	100249	100249					0.07969459296691639
YFPDTGIPEV	10	Unmodified	_YFPDTGIPEV_					0	0	0		ENSG00000174606|ENST00000366962|ANGEL2;nc|ENSG00000174606|Q5VTE6-2|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.2836303710938	2	569.276772	1136.53899	0.35332	0.00020114	-0.53588	-0.00030507	-0.18256	-0.00010393	569.2763297868746	79.783	1.254	79.564	79.118	80.372	-0.21923					86	29	4	0	0	0	0.82838	1	9594	9594		58.782	2.0609	1	1560400			90061	8484	62648	62750	100250	100250					-0.02381686859121146
YFPDTGIPEV	10	Unmodified	_YFPDTGIPEV_					0	0	0		ENSG00000174606|ENST00000366962|ANGEL2;nc|ENSG00000174606|Q5VTE6-2|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	ENSG00000174606|ENST00000366962|ANGEL2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.2838134765625	2	569.276772	1136.53899	-0.38749	-0.00022059	1.8534	0.0010551	1.4659	0.00083452	569.2773055914291	83.06	1.3771	82.921	82.088	83.465	-0.1386					94	31	4	0	0	0	1.0142	1	10018	10018		44.117	2.6902	1	969920			90062	8484	62648	62750	100251	100251					-0.02381686859121146
YFPLLFVDIP	10	Unmodified	_YFPLLFVDIP_					0	0	0			REV__ENST00000480638.1_1_7:134649999-134653093:+|nuORF	REV__ENST00000480638.1_1_7:134649999-134653093:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	408.88507080078125	3	408.561876	1222.6638	0.094469	3.8597E-05	3.4659	0.001416	3.5603	0.0014546	408.56313865971316	23.359	0.38156	23.179	22.975	23.356	-0.17989					12	8	2	0	0	0	0.03519	1	883	883		28.081	16.149	1	74048	+		90063	33429	62649	62751	100252	100252					0.06137230348099365
YFQQLFPK	8	Unmodified	_YFQQLFPK_					0	0	0			REV__ENST00000471188.5_1_7:92970131-92979232:+|nuORF	REV__ENST00000471188.5_1_7:92970131-92979232:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7669677734375	2	535.78711	1069.55967	-1.2141	-0.00065049	-1.0866	-0.0005822	-2.3007	-0.0012327	535.7856865047612	30.015	0.54609	29.837	29.697	30.243	-0.17818					17	12	2	0	0	0	0.027866	1	1925	1925		53.351	0	1	34869	+		90064	19783	62650	62752	100253	100253					0.027669483112276794
YFREDCAFSS	10	Unmodified	_YFREDCAFSS_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	612.7984008789062	2	612.753138	1223.49172	0.40486	0.00024808	2.7768	0.0017015	3.1817	0.0019496	612.7546463285544	58.684	0.35684	58.442	58.381	58.738	-0.24165					11	8	2	0	0	0	0.03519	1	6467	6467		32.812	16.095	1	504850			90065	1390	62651	62753	100254	100254					-0.11108289401749971
YFRTKLPK	8	Unmodified	_YFRTKLPK_					0	0	0			REV__ENSG00000203872|ENST00000388923|C6orf163	REV__ENSG00000203872|ENST00000388923|C6orf163	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	527.800048828125	2	526.816202	1051.61785	-1.5184	-0.00079991	1.9588	0.0010319	0.44043	0.00023202	527.3184945475635	83.757	0.30184	83.757	83.477	83.779	0					9	6	2	0	0	0	0.027866	1	10466	10466		30.504	1.3541	1	26236	+		90066	28551	62652	62754	100255	100255					0.09410629956482808
YFSIDLVTF	9	Unmodified	_YFSIDLVTF_					0	0	0		ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH	ENSG00000103599|ENST00000335894|IQCH	ENSG00000103599|ENST00000335894|IQCH	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	552.7830810546875	2	552.784233	1103.55391	-0.31974	-0.00017675	-2.4146	-0.0013348	-2.7344	-0.0015115	552.7829149883252	41.5	0.73085	41.273	41.006	41.737	-0.2278					47	18	4	0	0	0	0.88411	1	3659	3659		33.516	4.366	1	1842000			90067	2519	62653	62755	100256	100256					0.006278050088894815
YFSMLLVGK	9	Unmodified	_YFSMLLVGK_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.2505493164062	2	529.291171	1056.56779	-1.4207	-0.00075196	4.2363	0.0022422	2.8156	0.0014903	529.2932824126777	51.597	0.42094	51.32	51.156	51.577	-0.27643					19	10	2	0	0	0	0.024457	1	5316	5316		45.952	25.955	1	318450			90068	1973	62654	62756	100257	100257					0.041767592363612494
YFSTPFPAPVV	11	Unmodified	_YFSTPFPAPVV_					0	0	0		chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|16	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|16	chr5:90822097-90965415|211|21.16|0.18|6.88|+|0|TE_info:L1PA4,L1PA4_dup3961,L1,LINE,donor,-,90816414,90822097|None,ADGRV1|16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	612.798828125	2	612.818607	1223.62266	-1.6213	-0.00099358	-0.17848	-0.00010937	-1.7998	-0.001103	612.8180919843207	58.921	0.15596	58.733	58.623	58.779	-0.18795					5	3	2	0	0	0	0.024732	1	6485	6485		40.778	10.275	1	64295			90069	405	62655	62757	100258	100258					0.019794693085941617
YFTFKAQT	8	Unmodified	_YFTFKAQT_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	502.737548828125	2	503.255643	1004.49673	-0.40354	-0.00020308	1.887	0.00094967	1.4835	0.00074658	503.25559086479046	36.272	0.35679	36.067	35.886	36.242	-0.20518					13	9	2	0	0	0	0.027866	1	2808	2808		24.203	0	1	137680	+		90070	37143	62656	62758	100259	100259					-0.005336174768217461
YFTSATII	8	Unmodified	_YFTSATII_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|60|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|60|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|60|2|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	457.7829895019531	2	458.244744	914.474934	0.20295	9.3001E-05	-3.6027	-0.0016509	-3.3997	-0.0015579	458.2425126271446	79.386	0.65665	79.405	79.07	79.726	0.018677					21	15	2	0	0	0	0.027866	1	9812	9812		26.796	7.4361	1	89820			90071	17868	62657	62759	100260	100260					0.0142757777460929
YFTSATII	8	Unmodified	_YFTSATII_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|60|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|60|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|60|2|sense	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	458.244744	914.474934	0.044601	2.0438E-05	-2.1622	-0.00099081	-2.1176	-0.00097037	458.2431816234466	79.426	0.37535	79.426	79.283	79.658	0	0.01082	0.00064676	NaN	19.36	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74999			90072	17868	62657	62759							0.0142757777460929
YFVPHTKRY	9	Unmodified	_YFVPHTKRY_					0	0	0		ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.2173767089844	3	404.217102	1209.62948	0.45834	0.00018527	0.17389	7.0289E-05	0.63223	0.00025556	404.2171636767263	32.515	1.0427	32.278	31.867	32.91	-0.23666					46	24	2	0	0	0	0.45795	1	2251	2251		62.107	24.599	1	2439400			90073	13963	62658	62760	100261	100261					0.03304826979842801
YFVPHTKRY	9	Unmodified	_YFVPHTKRY_					0	0	0		ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.21710205078125	3	404.217102	1209.62948	-0.49366	-0.00019955	1.1249	0.0004547	0.63124	0.00025516	404.21751599757386	32.495	1.4675	32.337	31.861	33.329	-0.15772					58	35	3	0	0	0	0.077175	1	2225	2225		118.74	71.086	1	2127300			90074	13963	62658	62760	100262	100262					0.03304826979842801
YFVPLVIGIL	10	Unmodified	_YFVPLVIGIL_					0	0	0			REV__ENSG00000183060|ENST00000684762|LYSMD4	REV__ENSG00000183060|ENST00000684762|LYSMD4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	567.3298950195312	2	567.352086	1132.68962	-0.39553	-0.0002244	-3.498	-0.0019846	-3.8935	-0.002209	567.3505774839017	90.825	0.16704	90.809	90.74	90.907	-0.01606					7	3	3	0	0	0	0.03519	1	11463	11463		19.36	6.4008	1	59258	+		90075	27532	62659	62761	100263	100263					0.1285812459036606
YFVPLVIGIL	10	Unmodified	_YFVPLVIGIL_					0	0	0			REV__ENSG00000183060|ENST00000684762|LYSMD4	REV__ENSG00000183060|ENST00000684762|LYSMD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.352086	1132.68962	-0.1932	-0.00010961	-2.4097	-0.0013671	-2.6029	-0.0014767	567.35052185712	91.992	0.21852	91.87	91.76	91.979	-0.12242					7	4	2	0	0	0	0.03519	1	11307	11307		19.36	6.4008	1	28737	+		90076	27532	62659	62761	100264	100264					0.1285812459036606
YGACLCDPGLY	11	Carbamidomethyl (C)	_YGACLC(Carbamidomethyl (C))DPGLY_	YGAC(0.104)LC(0.896)DPGLY		YGAC(-9.3)LC(9.3)DPGLY		0	1	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	616.2598876953125	2	616.259742	1230.50493	-1.1418	-0.00070364	1.2832	0.00079076	0.14137	8.7122E-05	616.2603973055714	56.23	1.1596	56.073	55.783	56.943	-0.15656					59	29	3	0	0	0	0.782	1	6086	6086		58.782	10.822	2	1489600			90077	6955	62660	62762	100265	100265	85				-0.10110174614010248
YGAHESNAEY	10	Unmodified	_YGAHESNAEY_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.7306518554688	2	570.73326	1139.45197	-0.51074	-0.0002915	-0.19907	-0.00011361	-0.70981	-0.00040511	570.7316598095706	69.591	1.209	69.324	68.912	70.121	-0.26724					90	28	6	0	0	0	1.0002	1	8093	8093		45.972	0.020292	1	1363700	+		90078	24853	62661	62763	100266	100266					-0.11218093080810831
YGALLVLLTL	10	Unmodified	_YGALLVLLTL_					0	0	0			REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	538.3275756835938	2	538.341718	1074.66888	0.48558	0.00026141	2.6992	0.0014531	3.1847	0.0017145	538.3430330372635	99.707	0.52429	99.583	99.272	99.796	-0.12458					18	13	2	0	0	0	0.03519	1	12383	12383		29.15	7.1897	1	157830	+		90079	21367	62662	62764	100267	100267					0.13453534210702855
YGDPRAGGSSV	11	Unmodified	_YGDPRAGGSSV_					0	0	0			REV__ENST00000551260.5_1_12:50410460-50419216:-|nuORF	REV__ENST00000551260.5_1_12:50410460-50419216:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	532.7889404296875	2	533.25162	1064.48869	-0.42745	-0.00022794	4.3524	0.0023209	3.9249	0.002093	533.2536881442309	64.192	0.67402	64	63.717	64.391	-0.19244					42	16	4	0	0	0	0.024795	1	7296	7296		69.628	34.009	1	592070	+		90080	34928	62663	62765	100268	100268					-0.04097796464225212
YGEFLPIPQ	9	Unmodified	_YGEFLPIPQ_					0	0	0		ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.7645263671875	2	532.276575	1062.5386	-0.67741	-0.00036057	-4.4572	-0.0023725	-5.1346	-0.002733	532.2740053923159	45.421	0.51141	45.209	44.871	45.382	-0.21109					17	10	2	0	0	0	0.024466	1	4242	4242		18.324	0	1	261850			90081	10955	62664	62766	100269	100269					0.009829382117231944
YGEIMPVAKEK	11	Unmodified	_YGEIMPVAKEK_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	422.2381896972656	3	422.225046	1263.65331	0.50527	0.00021334	2.4941	0.0010531	2.9994	0.0012664	422.2260621515672	32.629	0.87975	32.437	31.899	32.779	-0.19261					44	20	4	0	0	0	0.024759	1	2292	2292		36.318	19.151	1	366110	+		90082	24029	62665	62767	100270	100270					0.032028796313397834
YGETIKILQL	10	Unmodified	_YGETIKILQL_					0	0	0		ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	589.3433227539062	2	589.344989	1176.67542	-0.98297	-0.00057931	-2.0956	-0.001235	-3.0785	-0.0018143	589.3435769896907	103.58	0.62865	103.59	103.35	103.98	0.0054245					48	16	4	0	0	0	1.1266	1	13269	13269		29.17	2.4771	1	621970			90083	14291	62666	62768	100271	100271					0.09415427371436635
YGETIKILQL	10	Unmodified	_YGETIKILQL_					0	0	0		ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.3428955078125	2	589.344989	1176.67542	-0.33817	-0.0001993	-3.3398	-0.0019683	-3.6779	-0.0021676	589.3429162948191	90.88	2.3927	90.74	89.357	91.75	-0.13942					163	56	4	0	0	0	1.0616	1	11233	11233		37.812	1.3648	1	6196800			90084	14291	62666	62768	100272	100272					0.09415427371436635
YGFIQVTLL	9	Unmodified	_YGFIQVTLL_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF	nc|ENSG00000105426|Q13332-6|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.3046875	2	527.302593	1052.59063	0.95797	0.00050514	3.4241	0.0018055	4.3821	0.0023107	527.304365478722	98.029	1.3703	97.904	97.417	98.787	-0.12414					55	32	3	0	0	0	0.83071	1	12140	12140		37.159	1.5408	1	608280			90085	2675	62667	62769	100273	100273					0.06644101625465737
YGFRIPKGRIF	11	Unmodified	_YGFRIPKGRIF_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	451.93280029296875	3	451.931185	1352.77173	0.91985	0.00041571	2.3203	0.0010486	3.2401	0.0014643	451.9321840221191	98.888	1.9798	98.752	97.891	99.87	-0.13625					183	48	5	0	0	0	1.0532	1	12264	12264		24.232	1.6702	1	1435400	+		90086	37137	62668	62770	100274	100274					0.10945039722014371
YGGVAPALKE	10	Unmodified	_YGGVAPALKE_					0	0	0		nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF;nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7748718261719	2	502.7742	1003.53385	0.26803	0.00013476	-0.3806	-0.00019136	-0.11257	-5.6596E-05	502.7738517661705	90.274	0.74262	90.287	90.043	90.785	0.013443					40	17	3	0	0	0	0.67706	1	11348	11348		68.787	4.5796	1	990980			90087	3237	62669	62771	100275	100275					0.032220540689422705
YGHARLTDV	9	Unmodified	_YGHARLTDV_					0	0	0			REV__ENSG00000132003|ENST00000590508|ZSWIM4	REV__ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.290283203125	2	516.267073	1030.51959	0.052581	2.7146E-05	-1.2595	-0.00065025	-1.2069	-0.0006231	516.266310389679	70.269	0.36513	70.019	69.817	70.182	-0.25063					12	8	2	0	0	0	0.024541	1	8190	8190		19.36	0	1	70443	+		90088	23250	62670	62772	100276	100276					0.005554016406449591
YGHARRDL	8	Unmodified	_YGHARRDL_					0	0	0			REV__ENSG00000160161|ENST00000291495|CILP2	REV__ENSG00000160161|ENST00000291495|CILP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2808837890625	2	494.259582	986.504612	-0.35546	-0.00017569	-0.033594	-1.6604E-05	-0.38905	-0.00019229	494.25962239936695	21.859	0.47197	21.773	21.457	21.929	-0.085484					11	9	2	0	0	0	0.027866	1	665	665		40.573	17.53	1	21888	+		90089	25291	62671	62773	100277	100277					0.010819545633239613
YGHLSIGT	8	Unmodified	_YGHLSIGT_					0	0	0		nc|ENSG00000111087|P08151-2|GLI1;ENSG00000111087|ENST00000228682|GLI1;GLI1|p.V537Sfs*4|1|0.08|ENSG00000111087|chr12:57470341-57470342|-/C|frameshift_variant	nc|ENSG00000111087|P08151-2|GLI1	nc|ENSG00000111087|P08151-2|GLI1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	424.21881103515625	2	424.21906	846.423567	0.15091	6.4021E-05	-1.3415	-0.00056911	-1.1906	-0.00050509	424.2184034867315	98.49	2.0564	98.5	97.728	99.785	0.010239					126	47	5	0	0	0	1.0133	1	12561	12561		35.201	1.0282	1	7266600			90090	3087	62672	62774	100278	100278					-0.005787461994145815
YGHTKGLLL	9	Unmodified	_YGHTKGLLL_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.289306640625	2	501.292559	1000.57057	0.31679	0.0001588	-4.3853	-0.0021983	-4.0685	-0.0020395	501.29029974416176	83.204	3.1125	83.114	81.216	84.328	-0.090454					167	73	4	0	0	0	0.96322	1	10397	10397		27.882	0.83493	1	1878500			90091	5187	62673	62775	100279	100279					0.07030350685522535
YGHTKGLLL	9	Unmodified	_YGHTKGLLL_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	501.29071044921875	2	501.292559	1000.57057	-0.38963	-0.00019532	-4.2687	-0.0021399	-4.6584	-0.0023352	501.290346499066	85.108	2.8513	85.05	84.32	87.171	-0.057617					202	67	4	0	0	0	0.72875	4	10786	10726;10749;10786;10859		44.117	5.3107	1	8504000			90092	5187	62673	62775	100280;100281;100282;100283	100282					0.07030350685522535
YGHTKGLLL	9	Unmodified	_YGHTKGLLL_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	501.2904968261719	2	501.292559	1000.57057	-0.51649	-0.00025891	-4.3022	-0.0021567	-4.8187	-0.0024156	501.2903595821037	85.002	2.9764	85.028	84.248	87.224	0.025536					216	70	4	0	0	0	0.62163	6	10702	10702;10739;10751;10774;10786;10812		51.335	6.9583	1	8326900			90093	5187	62673	62775	100284;100285;100286;100287;100288;100289	100284					0.07030350685522535
YGHTKGLLL	9	Unmodified	_YGHTKGLLL_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.2904968261719	2	501.292559	1000.57057	-0.32298	-0.00016191	-3.2597	-0.0016341	-3.5827	-0.001796	501.2905862857756	88.352	1.9534	88.181	87.855	89.808	-0.17053					95	46	4	0	0	0	0.87448	1	10767	10767		34.173	1.3601	1	1265500			90094	5187	62673	62775	100290	100290					0.07030350685522535
YGHTKGLLL	9	Unmodified	_YGHTKGLLL_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	501.2903747558594	2	501.292559	1000.57057	0.0063351	3.1757E-06	-3.9148	-0.0019624	-3.9084	-0.0019593	501.29041154116453	88.404	1.9279	88.273	87.955	89.883	-0.13135					92	45	3	0	0	0	0.75397	2	10806	10792;10806		42.396	6.2903	1	1364200			90095	5187	62673	62775	100291;100292	100292					0.07030350685522535
YGHTKGLLL	9	Unmodified	_YGHTKGLLL_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	501.2903747558594	2	501.292559	1000.57057	-0.25386	-0.00012726	-4.0451	-0.0020278	-4.2989	-0.002155	501.2904143369329	83.269	2.6618	83.131	81.702	84.364	-0.1386					168	61	4	0	0	0	0.72875	1	10068	10068		44.117	1.7207	1	2648000			90096	5187	62673	62775	100293	100293					0.07030350685522535
YGIGTILGRL	10	Unmodified	_YGIGTILGRL_					0	0	0			REV__ENSG00000041982|ENST00000350763|TNC	REV__ENSG00000041982|ENST00000350763|TNC	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167724609375	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	1.0781	1	10784	10784		35.618	0	1	5249700	+		90097	20097	62674	62776	100294	100294					0.09498308748334239
YGIRNAGYYAL	11	Unmodified	_YGIRNAGYYAL_					0	0	0		ENSG00000090857|ENST00000288050|PDPR;nc|ENSG00000090857|Q8NCN5-2|PDPR	ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	420.88238525390625	3	420.8839	1259.62987	0.36909	0.00015535	-3.375	-0.0014205	-3.0059	-0.0012651	420.88241128563686	35.715	0.88379	35.517	35.209	36.093	-0.19829					54	24	3	0	0	0	1.0233	1	2731	2731		31.634	1.0654	1	2037100			90098	1940	62675	62777	100295	100295					0.010442019090532995
YGIRVRVGR	9	Unmodified	_YGIRVRVGR_					0	0	0			REV__ENST00000298717.8_1_14:21979369-21979501:-|nuORF	REV__ENST00000298717.8_1_14:21979369-21979501:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.3253784179688	2	538.327799	1074.64105	0.041042	2.2094E-05	-0.15315	-8.2442E-05	-0.1121	-6.0348E-05	538.3279103195214	101.27	1.3445	101.15	100.65	102	-0.12576					54	33	2	0	0	0	0.98128	1	12620	12620		24.203	1.6231	1	82652	+		90099	30028	62676	62778	100296	100296					0.10671068793840277
YGISARLLGL	10	Unmodified	_YGISARLLGL_					0	0	0			REV__ENSG00000109501|ENST00000226760|WFS1	REV__ENSG00000109501|ENST00000226760|WFS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167724609375	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.96965	1	10676	10676		49.442	3.4693	1	5249700	+		90100	21797	62677	62779	100297	100297					0.09498308748334239
YGKHVSCGVI	10	Unmodified	_YGKHVSCGVI_					0	0	0			REV__nc|ENSG00000184672|Q86SE5-3|RALYL	REV__nc|ENSG00000184672|Q86SE5-3|RALYL	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.2749633789062	2	531.773677	1061.5328	0.1954	0.00010391	1.1112	0.00059088	1.3065	0.00069479	532.275073301685	106.35	0.83064	106.35	106.03	106.86	0					46	31	2	0	0	0	1.089	1	13696	13696		34.173	0	1	135670	+		90101	27692	62678	62780	100298	100298					0.004495164284207931
YGKIIQKTP	9	Unmodified	_YGKIIQKTP_					0	0	0		nc|ENSG00000078319|A4D2B8-3|PMS2P1;nc|ENSG00000078319|A4D2B8-2|PMS2P1;nc|ENSG00000078319|A4D2B8|PMS2P1	nc|ENSG00000078319|A4D2B8-3|PMS2P1	nc|ENSG00000078319|A4D2B8-3|PMS2P1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.292724609375	2	524.313492	1046.61243	-0.25177	-0.00013201	-0.15884	-8.328E-05	-0.41061	-0.00021529	524.3137988327923	81.19	0.25078	81.047	80.9	81.151	-0.14249					6	5	2	0	0	0	0.024447	1	9754	9754		32.812	6.1195	1	35172			90102	18089	62679	62781	100299	100299					0.09098906374038052
YGKLEKLI	8	Unmodified	_YGKLEKLI_					0	0	0			REV__nc|ENSG00000275410|P35680-4|HNF1B	REV__nc|ENSG00000275410|P35680-4|HNF1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.2968444824219	2	482.29731	962.580068	-0.29432	-0.00014195	-0.05717	-2.7573E-05	-0.35149	-0.00016952	482.29720747956003	46.362	0.99538	46.101	45.777	46.773	-0.26118					69	26	4	0	0	0	0.50239	1	4433	4433		85.359	0	1	4596400	+		90103	37203	62680	62782	100300	100300					0.09728118971031563
YGKLQGLLKS	10	Unmodified	_YGKLQGLLKS_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8304443359375	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.1265	1	11154	11154		24.519	2.5593	1	6921700			90104	3255	62681	62783	100301	100301					0.10094577919812764
YGKLQGLLKS	10	Unmodified	_YGKLQGLLKS_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.829833984375	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	1.089	1	10635	10635		34.173	5.023	1	1623500			90105	3255	62681	62783	100302	100302					0.10094577919812764
YGKPPAGN	8	Unmodified	_YGKPPAGN_					0	0	0		ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	402.2055358886719	2	402.205953	802.397353	1.094	0.00044	-1.9387	-0.00077974	-0.84469	-0.00033974	402.20510936484203	95.336	1.7812	95.336	94.659	96.44	0					129	41	5	0	0	0	1.0338	2	12170	12170;12195		31.955	2.1133	1	7302700			90106	12615	62682	62784	100303;100304	100303					-0.011750153709044753
YGKPPAGN	8	Unmodified	_YGKPPAGN_					0	0	0		ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	402.2051696777344	2	402.205953	802.397353	0.85638	0.00034444	-1.7043	-0.00068547	-0.8479	-0.00034103	402.2052083095665	95.436	1.7876	95.439	94.87	96.657	0.0033722					115	41	4	0	0	0	0.99042	4	12078	12078;12087;12099;12111		38.806	8.9646	1	7412800			90107	12615	62682	62784	100305;100306;100307;100308	100305					-0.011750153709044753
YGKPPAGN	8	Unmodified	_YGKPPAGN_					0	0	0		ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	402.2058410644531	2	402.205953	802.397353	2.7814	0.0011187	-3.5378	-0.0014229	-0.7564	-0.00030423	402.20445599860625	95.454	1.4843	95.458	94.791	96.276	0.0041199					106	34	4	0	0	0	0.99042	5	12058	12058;12082;12106;12118;12133		38.806	6.8513	1	7017700			90108	12615	62682	62784	100309;100310;100311;100312;100313	100309					-0.011750153709044753
YGKPPAGN	8	Unmodified	_YGKPPAGN_					0	0	0		ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.2049865722656	2	402.205953	802.397353	0.92344	0.00037141	-1.6792	-0.00067539	-0.75578	-0.00030398	402.2052180634848	96.013	2.0859	95.876	95.199	97.285	-0.1367					136	47	4	0	0	0	0.99042	3	11811	11811;11893;11906		38.806	13.356	1	5342800			90109	12615	62682	62784	100314;100315;100316	100314					-0.011750153709044753
YGKPPAGN	8	Unmodified	_YGKPPAGN_					0	0	0		ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.2055969238281	2	402.205953	802.397353	1.7592	0.00070757	-2.5436	-0.0010231	-0.78442	-0.0003155	402.2048705868518	96.086	1.5954	95.963	95.334	96.929	-0.12305					112	36	4	0	0	0	0.99042	6	11853	11853;11865;11877;11902;11914;11928		38.806	8.9048	1	4914300			90110	12615	62682	62784	100317;100318;100319;100320;100321;100322	100317					-0.011750153709044753
YGKPPAGN	8	Unmodified	_YGKPPAGN_					0	0	0		ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	ENST00000353704.2_2_9:35732607-35732757:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	402.2054443359375	2	402.205953	802.397353	-0.56388	-0.0002268	-0.30876	-0.00012418	-0.87264	-0.00035098	402.20578555267815	96.135	1.8234	95.979	95.4	97.223	-0.15646					111	41	4	0	0	0	0.99042	4	11845	11845;11857;11894;11908		38.806	8.9646	1	4321200			90111	12615	62682	62784	100323;100324;100325;100326	100323					-0.011750153709044753
YGKRKLLEL	9	Unmodified	_YGKRKLLEL_					0	0	0		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	560.348876953125	2	560.347866	1118.68118	-0.034242	-1.9187E-05	2.7243	0.0015265	2.69	0.0015073	560.3494057075354	106.07	0.48589	106.07	105.81	106.3	0.00014496					46	18	3	0	0	0	0.83071	1	13560	13560		37.159	2.9866	1	450830			90112	3775	62683	62785	100327	100327					0.1265857067376146
YGLGILKTSL	10	Unmodified	_YGLGILKTSL_					0	0	0			REV__ENST00000431012.5_1_6:30025946-30028930:-|nuORF	REV__ENST00000431012.5_1_6:30025946-30028930:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2483520507812	2	532.82115	1063.62775	-0.29853	-0.00015906	0.28537	0.00015205	-0.013155	-7.0092E-06	532.8210912006288	49.465	0.60756	49.365	49.068	49.676	-0.1008					40	15	4	0	0	0	0.03519	1	4940	4940		17.365	1.7232	1	768850	+		90113	32363	62684	62786	100328	100328					0.0984777317123644
YGLKNLTALL	10	Unmodified	_YGLKNLTALL_					0	0	0		nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1	nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.3324584960938	2	553.334424	1104.6543	-0.076569	-4.2368E-05	-3.3934	-0.0018777	-3.4699	-0.00192	553.3323919260035	95.322	1.2671	95.325	94.957	96.224	0.0033798					89	29	4	0	0	0	1.0992	1	12093	12093		32.812	1.2826	1	4391700			90114	6478	62685	62787	100329	100329					0.10615462062560255
YGLLLNEN	8	Unmodified	_YGLLLNEN_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574287.1_1_16:11941440-11945369:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	468.24456787109375	2	468.245275	934.475997	0.092804	4.3455E-05	-1.4114	-0.00066088	-1.3186	-0.00061742	468.2444772290213	103.73	2.2659	103.56	102.88	105.14	-0.1679					140	65	5	0	0	0	1.0106	1	12914	12914		35.618	0	1	4477100			90115	8158	62686	62788	100330	100330					0.006137921435197313
YGLMILLII	9	Unmodified	_YGLMILLII_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.8274536132812	2	524.827389	1047.64023	0.5509	0.00028913	-1.7426	-0.00091458	-1.1917	-0.00062545	524.8263320992579	98.046	2.2952	97.91	97.423	99.718	-0.13625					172	55	6	0	0	0	0.93795	1	12093	12093		29.842	4.3914	1	14595000			90116	4213	62687	62789	100331	100331					0.11831093309933749
YGLMILRLKS	10	Unmodified	_YGLMILRLKS_					0	0	0		nc|ENSG00000112038|P35372-6|OPRM1;nc|ENSG00000112038|P35372-11|OPRM1;nc|ENSG00000112038|P35372-2|OPRM1;nc|ENSG00000112038|P35372-8|OPRM1;ENSG00000112038|ENST00000330432|OPRM1;nc|ENSG00000112038|P35372-4|OPRM1;nc|ENSG00000112038|P35372-7|OPRM1;nc|ENSG00000112038|P35372-5|OPRM1;nc|ENSG00000112038|P35372-9|OPRM1;nc|ENSG00000112038|P35372-3|OPRM1;nc|ENSG00000112038|P35372-10|OPRM1;nc|ENSG00000112038|P35372-15|OPRM1;nc|ENSG00000112038|P35372-12|OPRM1;nc|ENSG00000112038|P35372-14|OPRM1;nc|ENSG00000112038|P35372-13|OPRM1	nc|ENSG00000112038|P35372-6|OPRM1	nc|ENSG00000112038|P35372-6|OPRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	597.3535766601562	2	597.357376	1192.7002	-0.68039	-0.00040643	-4.1504	-0.0024793	-4.8308	-0.0028857	597.3540221839667	103.66	1.264	103.66	103.14	104.4	0.0031357					78	31	5	0	0	0	1.0992	1	13265	13265		32.812	1.2826	1	534480			90117	18175	62688	62790	100332	100332					0.11155783973140387
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.3149108886719	2	494.315503	986.616454	0.18794	9.2903E-05	-0.56598	-0.00027977	-0.37804	-0.00018687	494.31510654565903	73.462	0.81658	73.462	73.182	73.999	0					41	20	4	0	0	0	0.11848	2	8980	8980;8991		106.42	53.479	1	2446800			90118	7775	62689	62791	100333;100334	100333					0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	494.3157958984375	2	494.315503	986.616454	-0.16952	-8.3798E-05	0.24455	0.00012089	0.075029	3.7088E-05	494.31546687323413	73.8	0.56363	73.529	73.241	73.804	-0.27126					33	14	4	0	0	0	0.11848	2	8986	8986;9003		106.42	44.308	1	2020400			90119	7775	62689	62791	100335;100336	100335					0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.317626953125	2	494.315503	986.616454	-0.32798	-0.00016212	0.39254	0.00019404	0.064561	3.1913E-05	494.31558112610077	73.497	0.90625	73.506	73.145	74.051	0.0096512					39	22	4	0	0	0	0.11848	2	8904	8904;8916		106.42	53.479	1	2087400			90120	7775	62689	62791	100337;100338	100337					0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	494.315503	986.616454	-0.45551	-0.00022517	0.8548	0.00042254	0.39929	0.00019737	494.3158013260438	73.69	0.43056	73.413	73.174	73.605	-0.2769	-0.0050405	0.00030313	NaN	106.42	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511070			90121	7775	62689	62791							0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	494.315503	986.616454	-0.28646	-0.0001416	0.73767	0.00036464	0.45121	0.00022304	494.31579441964703	73.615	0.50835	73.35	73.099	73.607	-0.26479	-0.068529	0.00018734	NaN	106.42	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	587180			90122	7775	62689	62791							0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	494.315503	986.616454	-0.26441	-0.0001307	0.60911	0.00030109	0.34469	0.00017039	494.31578051949606	73.44	0.51234	73.25	73.007	73.519	-0.19026	-0.16853	6.0232E-05	NaN	106.42	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512920			90123	7775	62689	62791							0.12260995867757174
YGLRSLTRLH	10	Unmodified	_YGLRSLTRLH_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	608.8231201171875	2	608.351471	1214.68839	-0.85159	-0.00051806	0.25646	0.00015602	-0.59512	-0.00036204	608.3513380584482	46.185	0.37247	46.088	45.887	46.259	-0.096649					20	9	3	0	0	0	0.03519	1	4436	4436		24.519	19.299	1	215500			90124	6282	62690	62792	100339	100339					0.08963303274163081
YGLVFFVI	8	Unmodified	_YGLVFFVI_					0	0	0		ENST00000582377.1_1_17:11998936-12013832:+|nuORF	ENST00000582377.1_1_17:11998936-12013832:+|nuORF	ENST00000582377.1_1_17:11998936-12013832:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	479.27777099609375	2	479.275847	956.537141	-0.16077	-7.7054E-05	3.1522	0.0015108	2.9914	0.0014337	479.2774294842075	81.115	2.5925	80.972	79.578	82.17	-0.14249					145	61	4	0	0	0	1.0241	1	9850	9850		33.493	8.989	1	2028900			90125	17177	62691	62793	100340	100340					0.05713348913616301
YGMERVWCVAS	11	Unmodified	_YGMERVWCVAS_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.2537841796875	3	434.198614	1299.57401	-0.36768	-0.00015965	-2.5021	-0.0010864	-2.8698	-0.0012461	434.19747044481954	28.785	0.42453	28.783	28.584	29.009	-0.0019016					13	9	2	0	0	0	0.024727	1	1685	1685		12.957	0	1	53741			90126	9337	62692	62794	100341	100341					-0.0637909059444155
YGMFGIIWYM	10	Unmodified	_YGMFGIIWYM_					0	0	0		nc|ENSG00000179520|Q8NDX2-2|SLC17A8;ENSG00000179520|ENST00000323346|SLC17A8	nc|ENSG00000179520|Q8NDX2-2|SLC17A8	nc|ENSG00000179520|Q8NDX2-2|SLC17A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	426.71990966796875	3	427.532934	1279.57697	0.73687	0.00031504	2.571	0.0010992	3.3079	0.0014142	427.5338553930629	21.858	0.38363	21.681	21.397	21.781	-0.17721					13	7	2	0	0	0	0.03519	1	692	692		12.812	2.2249	1	47512			90127	8899	62693	62795	100342	100342					-0.051632154696108046
YGMNQHVE	8	Unmodified	_YGMNQHVE_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4;REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	489.2655334472656	2	489.210909	976.407265	0.089011	4.3545E-05	2.9146	0.0014259	3.0037	0.0014694	489.2125037352129	55.923	0.55119	55.707	55.447	55.998	-0.21607					20	14	2	0	0	0	0.027866	1	6076	6076		82.305	19.327	1	121540	+		90128	25831;28450	62694	62796	100343	100343					-0.0818819542782876
YGMYSKHLQR	10	Unmodified	_YGMYSKHLQR_					0	0	0		ENST00000287761.7_1_5:72285324-72286354:+|nuORF	ENST00000287761.7_1_5:72285324-72286354:+|nuORF	ENST00000287761.7_1_5:72285324-72286354:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	428.21673583984375	3	428.216885	1281.62883	-0.42232	-0.00018084	-0.5266	-0.0002255	-0.94891	-0.00040634	428.2165544112592	29.782	1.6258	29.609	28.42	30.046	-0.17258					67	37	3	0	0	0	1.1266	1	1861	1861		29.17	2.1227	1	1126900			90129	11768	62695	62797	100344	100344					-0.0007233573151097517
YGNAPRVRI	9	Unmodified	_YGNAPRVRI_					0	0	0		nc|ENSG00000103507|O14874-3|BCKDK;ENSG00000103507|ENST00000219794|BCKDK;nc|ENSG00000103507|O14874-2|BCKDK	nc|ENSG00000103507|O14874-3|BCKDK	nc|ENSG00000103507|O14874-3|BCKDK	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2678833007812	2	523.298707	1044.58286	-0.56987	-0.00029821	-1.387	-0.00072579	-1.9568	-0.001024	523.2987167335618	43.239	0.32798	43.1	42.956	43.284	-0.13929					19	8	3	0	0	0	0.024354	1	4031	4031		30.504	1.3541	1	126390			90130	2510	62696	62798	100345	100345					0.06235387148558402
YGNVHLKK	8	Unmodified	_YGNVHLKK_					0	0	0			REV__SLITRK4|p.N387Y|1|0.67|ENSG00000179542|chrX:143629950-143629950|T/A|missense_variant	REV__SLITRK4|p.N387Y|1|0.67|ENSG00000179542|chrX:143629950-143629950|T/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	479.77728271484375	2	479.777077	957.5396	0.57933	0.00027795	0.8928	0.00042834	1.4721	0.00070629	479.77781162025775	85.935	1.6683	85.785	85.327	86.996	-0.14967					90	38	5	0	0	0	0.97924	1	10459	10459		40.573	1.7665	1	631070	+		90131	37513	62697	62799	100346	100346					0.05913197371273782
YGPKIVPR	8	Unmodified	_YGPKIVPR_					0	0	0		nc|ENSG00000198246|Q9BZD2-2|SLC29A3;ENSG00000198246|ENST00000373189|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	465.28033447265625	2	465.281995	928.549437	-0.188	-8.7473E-05	-3.7879	-0.0017625	-3.9759	-0.0018499	465.2799934559697	88.073	1.1725	87.9	87.497	88.67	-0.17254					86	28	5	0	0	0	1.0574	1	10744	10744		25.45	0.94616	1	1783100			90132	10112	62698	62800	100347	100347					0.08230385376668892
YGPNGFPLL	9	Unmodified	_YGPNGFPLL_					0	0	0		nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	nc|ENSG00000138134|Q96FJ0-2|STAMBPL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.27276611328125	2	489.258185	976.501818	0.12933	6.3274E-05	-1.3237	-0.00064765	-1.1944	-0.00058437	489.25739781084445	38.892	1.8201	38.666	38.075	39.896	-0.2257					76	48	2	0	0	0	0.024412	1	3261	3261		40.573	0	1	360170			90133	18319	62699	62801	100348	100348					0.01262686385791767
YGPPPTEPIY	10	Unmodified	_YGPPPTEPIY_					0	0	0			REV__nc|ENSG00000175387|Q15796-2|SMAD2	REV__nc|ENSG00000175387|Q15796-2|SMAD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	567.32958984375	2	567.279315	1132.54408	-0.29089	-0.00016501	-2.4055	-0.0013646	-2.6964	-0.0015296	567.2778556668607	89.701	1.0538	89.573	88.914	89.967	-0.12774					31	24	2	0	0	0	0.03519	1	10930	10930		44.117	0	1	123500	+		90134	26946	62700	62802	100349	100349					-0.016893829964601537
YGPTVIVLAFV	11	Unmodified	_YGPTVIVLAFV_					0	0	0			REV__ENSG00000154262|ENST00000284425|ABCA6	REV__ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	589.343017578125	2	589.844625	1177.6747	0.74458	0.00043918	-0.70382	-0.00041514	0.040757	2.404E-05	589.8442217405853	89.88	1.4456	89.894	88.835	90.281	0.013443					64	34	3	0	0	0	0.024732	1	11275	11275		25.574	6.4705	1	746590	+		90135	24950	62701	62803	100350	100350					0.09296632722362119
YGPVAAHVVE	10	Unmodified	_YGPVAAHVVE_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2758178710938	2	521.271824	1040.5291	0.2964	0.00015451	0.91461	0.00047676	1.211	0.00063127	521.774773603662	17.221	0.2065	17.079	16.977	17.183	-0.14278					8	4	2	0	0	0	0.03519	1	143	143		17.365	0	1	11330	+		90136	27183	62702	62804	100351	100351					0.010451699261693648
YGQDYSTHWN	10	Unmodified	_YGQDYSTHWN_					0	0	0		nc|ENSG00000120889|O14763-3|TNFRSF10B;ENST00000523504.5_1_8:22880186-22926453:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B	nc|ENSG00000120889|O14763-3|TNFRSF10B	nc|ENSG00000120889|O14763-3|TNFRSF10B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	424.862548828125	3	424.175632	1269.50507	-0.23229	-9.8533E-05	1.5914	0.00067504	1.3591	0.00057651	424.50957583094396	29.944	0.25334	29.699	29.525	29.779	-0.24415					8	5	3	0	0	0	0.03519	1	1879	1879		20.837	0	1	39671			90137	3844	62703	62805	100352	100352					-0.11890715298136456
YGQFCDPAI	9	Unmodified	_YGQFCDPAI_					0	0	0		ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559015.5_1_15:85191580-85197505:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8002014160156	2	507.223485	1012.43242	0.19859	0.00010073	2.0563	0.001043	2.2549	0.0011437	507.2241568613628	51.981	0.29142	51.797	51.598	51.889	-0.18405					14	7	3	0	0	0	0.024405	1	5359	5359		44.117	12.162	1	101060			90138	16769	62704	62806	100353	100353					-0.07330140625265358
YGQFCDPAI	9	Unmodified	_YGQFCDPAI_					0	0	0		ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559015.5_1_15:85191580-85197505:-|nuORF	ENST00000559015.5_1_15:85191580-85197505:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	507.223485	1012.43242	-0.042671	-2.1644E-05	3.0236	0.0015337	2.981	0.001512	507.22488119934377	51.823	0.32892	51.704	51.575	51.904	-0.11876	-0.0465	0.00034872	NaN	44.117	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98160			90139	16769	62704	62806							-0.07330140625265358
YGQKSLEKS	9	Unmodified	_YGQKSLEKS_					0	0	0			REV__ENST00000367607.7_2_1:179924016-179959652:+|nuORF	REV__ENST00000367607.7_2_1:179924016-179959652:+|nuORF	MSMS	OPSCC_40_ClassI_Rep-3	6	520.2750244140625	2	520.274564	1038.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.94	1	105.78	105.28	106.28	-0.16132								0	0	0	0.59141	1	13176	13176		40.778	1.972	1		+		90140	31028	62705	62807	100354	100354					0.016848487180141092
YGQLVGNQ	8	Unmodified	_YGQLVGNQ_					0	0	0		ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	ENSG00000178498|ENST00000337737|DTX3	ENSG00000178498|ENST00000337737|DTX3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	439.7214050292969	2	439.721967	877.429381	0.18623	8.1889E-05	-1.3476	-0.00059256	-1.1613	-0.00051067	439.72132243225815	101.68	0.89462	101.55	101.13	102.03	-0.13157					40	20	3	0	0	0	1.0574	1	12601	12601		20.482	1.1219	1	240910			90141	8816	62706	62808	100355	100355					-0.014236476877613313
YGRAALSRKSL	11	Unmodified	_YGRAALSRKSL_					0	0	0			REV__ENSG00000168806|ENST00000305641|LCMT2	REV__ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3541870117188	2	611.356754	1220.69895	-1.2666	-0.00077434	0.096036	5.8712E-05	-1.1706	-0.00071563	611.3566789164663	92.366	2.2946	92.366	91.092	93.387	0					157	54	4	0	0	0	1.0392	1	11745	11745		28.081	2.5074	1	3820300	+		90142	26295	62707	62809	100356	100356					0.09743285928607293
YGRAALSRKSL	11	Unmodified	_YGRAALSRKSL_					0	0	0			REV__ENSG00000168806|ENST00000305641|LCMT2	REV__ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3561401367188	2	611.356754	1220.69895	-0.32068	-0.00019605	-0.62425	-0.00038164	-0.94493	-0.00057769	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	1.013	1	11962	11962		33.922	3.6039	1	11218000	+		90143	26295	62707	62809	100357	100357					0.09743285928607293
YGRIRDKKVS	10	Unmodified	_YGRIRDKKVS_					0	0	0			REV__ENST00000231134.7_2_5:140514881-140515013:+|nuORF	REV__ENST00000231134.7_2_5:140514881-140515013:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.85791015625	2	611.356754	1220.69895	-0.81331	-0.00049722	-0.21283	-0.00013012	-1.0261	-0.00062734	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.0508	1	12131	12131		39.253	5.3312	1	11166000	+		90144	29410	62708	62810	100358	100358					0.09743285928584555
YGRRWRRK	8	Unmodified	_YGRRWRRK_					0	0	0		nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210;KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	nc|ENSG00000250423|Q9ULL0|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3438720703125	2	589.344315	1176.67408	-1.6034	-0.00094497	-0.87687	-0.00051678	-2.4803	-0.0014617	589.3436524523986	90.816	3.2144	90.661	88.478	91.692	-0.1552					186	76	4	0	0	0	1.0574	1	11032	11032		26.796	1.222	1	5827400			90145	10848	62709	62811	100359	100359					0.09280695636539349
YGRRWRRK	8	Unmodified	_YGRRWRRK_					0	0	0		nc|ENSG00000250423|Q9ULL0|KIAA1210;ENSG00000250423|ENST00000691062|KIAA1210;KIAA1210|p.N1130Kfs*33|1|0.41|ENSG00000250423|chrX:119087840-119087840|A/-|frameshift_variant	nc|ENSG00000250423|Q9ULL0|KIAA1210	nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.343017578125	2	589.344315	1176.67408	-0.57069	-0.00033633	-2.0121	-0.0011858	-2.5828	-0.0015222	589.342989397297	92.74	3.4928	92.599	91.66	95.153	-0.14131					316	81	5	0	0	0	1.0239	1	11666	11666		33.516	4.3455	1	17343000			90146	10848	62709	62811	100360	100360					0.09280695636539349
YGRVEKVVI	9	Unmodified	_YGRVEKVVI_					0	0	0		HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant;nc|ENSG00000148680|P34969-3|HTR7;nc|ENSG00000148680|P34969-2|HTR7;chr10:90742528-90748839|433|11.51|0.69|4.07|-|ENST00000277874|HTR7,HTR7;HTR7|p.K474Rfs*3|1|0.23|ENSG00000148680|chr10:90742501-90742501|T/-|frameshift_variant;ENSG00000148680|ENST00000336152|HTR7	HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant	HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8167114257812	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.87448	1	10940	10940		34.173	0	1	3741200			90147	305	62710	62812	100361	100361					0.09498308748334239
YGRVEKVVI	9	Unmodified	_YGRVEKVVI_					0	0	0		HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant;nc|ENSG00000148680|P34969-3|HTR7;nc|ENSG00000148680|P34969-2|HTR7;chr10:90742528-90748839|433|11.51|0.69|4.07|-|ENST00000277874|HTR7,HTR7;HTR7|p.K474Rfs*3|1|0.23|ENSG00000148680|chr10:90742501-90742501|T/-|frameshift_variant;ENSG00000148680|ENST00000336152|HTR7	HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant	HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8167114257812	2	531.818941	1061.62333	0.17298	9.1995E-05	-4.1238	-0.0021931	-3.9509	-0.0021011	531.8166531068138	85.355	2.6332	85.16	83.7	86.333	-0.19508					190	61	4	0	0	0	0.84115	1	10384	10384		36.447	2.2742	1	1282000			90148	305	62710	62812	100362	100362					0.09498308748334239
YGRVEKVVI	9	Unmodified	_YGRVEKVVI_					0	0	0		HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant;nc|ENSG00000148680|P34969-3|HTR7;nc|ENSG00000148680|P34969-2|HTR7;chr10:90742528-90748839|433|11.51|0.69|4.07|-|ENST00000277874|HTR7,HTR7;HTR7|p.K474Rfs*3|1|0.23|ENSG00000148680|chr10:90742501-90742501|T/-|frameshift_variant;ENSG00000148680|ENST00000336152|HTR7	HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant	HTR7|p.G85Afs*4|1|0.34|ENSG00000148680|chr10:90857418-90857418|C/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8171997070312	2	531.818941	1061.62333	-0.35028	-0.00018629	-3.6976	-0.0019664	-4.0479	-0.0021527	531.8168456558592	87.442	2.9783	87.263	86.262	89.241	-0.17874					276	71	5	0	0	0	0.75397	2	10821	10569;10821		42.396	3.1433	1	5249700			90149	305	62710	62812	100363;100364	100364					0.09498308748334239
YGRVGLTLLA	10	Unmodified	_YGRVGLTLLA_					0	0	0		ENST00000413474.5_1_3:195709184-195712605:-|nuORF	ENST00000413474.5_1_3:195709184-195712605:-|nuORF	ENST00000413474.5_1_3:195709184-195712605:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.8169555664062	2	531.818941	1061.62333	0.17298	9.1995E-05	-4.1238	-0.0021931	-3.9509	-0.0021011	531.8166531068138	85.355	2.6332	85.16	83.7	86.333	-0.19508					190	61	4	0	0	0	1.0541	1	10409	10409		38.806	9.6566	1	1282000			90150	13844	62711	62813	100365	100365					0.09498308748356976
YGSCGPKTML	10	Unmodified	_YGSCGPKTML_					0	0	0			REV__ENSG00000153446|ENST00000472572|C16orf89	REV__ENSG00000153446|ENST00000472572|C16orf89	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.7664794921875	2	528.74627	1055.47799	-0.40719	-0.0002153	-1.7994	-0.00095142	-2.2066	-0.0011667	528.7449600866997	66.155	0.92242	65.904	65.312	66.234	-0.25112					42	22	3	0	0	0	0.03519	1	7531	7531		33.922	0	1	494170	+		90151	24904	62712	62814	100366	100366					-0.04753238434545892
YGSGDQEAW	9	Unmodified	_YGSGDQEAW_					0	0	0		ENST00000509583.1_1_4:17585128-17586760:+|nuORF;ENST00000508014.5_1_4:17585059-17587679:+|nuORF;nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3	ENST00000509583.1_1_4:17585128-17586760:+|nuORF	ENST00000509583.1_1_4:17585128-17586760:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	506.7148132324219	2	506.703971	1011.39339	-0.45421	-0.00023015	-2.3376	-0.0011845	-2.7918	-0.0014146	506.70246926856174	33.842	0.11928	33.642	33.555	33.675	-0.20019					4	2	2	0	0	0	0.024523	1	2445	2445		29.15	12.676	1	82757			90152	726	62713	62815	100367	100367					-0.11185149655273108
YGSGRPAL	8	Unmodified	_YGSGRPAL_					0	0	0			REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF	REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	410.71881103515625	2	410.719227	819.423902	0.76249	0.00031317	-1.8416	-0.00075639	-1.0791	-0.00044322	410.71839091260426	95.381	1.9576	95.381	94.702	96.659	0					107	45	4	0	0	0	1.0574	1	12192	12192		25.45	0	1	3807300	+		90153	34529	62714	62816	100368	100368					0.006966735204173347
YGSHPLNSL	9	Unmodified	_YGSHPLNSL_					0	0	0			REV__nc|ENSG00000280987|P43243-2|MATR3	REV__nc|ENSG00000280987|P43243-2|MATR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	494.25042724609375	2	494.248349	986.482145	-0.38157	-0.00018859	3.5117	0.0017356	3.1301	0.0015471	494.2499303894373	44.832	0.79963	44.832	44.348	45.147	0					42	22	3	0	0	0	0.35646	1	4324	4324		68.787	0.30212	1	2476500	+		90154	19968	62715	62817	100369	100369					-0.01163689624968356
YGSHPLNSL	9	Unmodified	_YGSHPLNSL_					0	0	0			REV__nc|ENSG00000280987|P43243-2|MATR3	REV__nc|ENSG00000280987|P43243-2|MATR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.25018310546875	2	494.248349	986.482145	-0.23565	-0.00011647	3.43	0.0016953	3.1944	0.0015788	494.24989369416306	44.864	0.59485	44.901	44.578	45.173	0.036903					32	16	3	0	0	0	0.19099	1	4261	4261		90.37	8.0648	1	2519600	+		90155	19968	62715	62817	100370	100370					-0.01163689624968356
YGSHPLNSL	9	Unmodified	_YGSHPLNSL_					0	0	0			REV__nc|ENSG00000280987|P43243-2|MATR3	REV__nc|ENSG00000280987|P43243-2|MATR3	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	494.248349	986.482145	-0.23565	-0.00011647	3.43	0.0016953	3.1944	0.0015788	494.24989369416306	44.864	0.59485	44.901	44.578	45.173	0.036903	0.051584	-0.00019805	NaN	90.37	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2519600	+		90156	19968	62715	62817							-0.01163689624968356
YGSLLAKKIN	10	Unmodified	_YGSLLAKKIN_					0	0	0			REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	553.8305053710938	2	553.832049	1105.64954	-0.078213	-4.3317E-05	-3.6861	-0.0020415	-3.7643	-0.0020848	553.8299006401792	89.023	3.5125	89.023	88.128	91.641	0					343	83	6	0	0	0	1.0781	1	11351	11351		35.618	1.4457	1	4896800	+		90157	20864	62716	62818	100371	100371					0.10094577919812764
YGSLLAKKIN	10	Unmodified	_YGSLLAKKIN_					0	0	0			REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.8302001953125	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	1.0271	1	10958	10958		42.396	6.7778	1	6583300	+		90158	20864	62716	62818	100372	100372					0.10094577919812764
YGSLLAKKIN	10	Unmodified	_YGSLLAKKIN_					0	0	0			REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	REV__nc|ENSG00000089876|Q7L7V1-2|DHX32	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8302001953125	2	553.832049	1105.64954	0.070138	3.8845E-05	-3.8901	-0.0021544	-3.8199	-0.0021156	553.8297942821338	89.193	3.4753	89.056	88.232	91.707	-0.13762					306	82	5	0	0	0	1.089	1	10962	10962		34.173	1.3601	1	5986700	+		90159	20864	62716	62818	100373	100373					0.10094577919812764
YGSMYWSI	8	Unmodified	_YGSMYWSI_					0	0	0			REV__ENST00000509805.5_1_5:69363243-69366626:+|nuORF	REV__ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	503.30810546875	2	503.720578	1005.4266	-0.042832	-2.1575E-05	4.1844	0.0021078	4.1415	0.0020862	504.22313679742854	42.69	0.14995	42.577	42.464	42.614	-0.11253					5	3	2	0	0	0	0.027866	1	3866	3866		44.531	0	1	31922	+		90160	26632	62717	62819	100374	100374					-0.07589239136939341
YGSPSITDWL	10	Unmodified	_YGSPSITDWL_					0	0	0		nc|ENSG00000172728|Q6P4F1-6|FUT10;ENSG00000172728|ENST00000327671|FUT10;nc|ENSG00000172728|Q6P4F1-2|FUT10;nc|ENSG00000172728|Q6P4F1-4|FUT10;nc|ENSG00000172728|Q6P4F1-5|FUT10;ENST00000520767.5_1_8:33246435-33318970:-|nuORF;nc|ENSG00000172728|Q6P4F1-3|FUT10	nc|ENSG00000172728|Q6P4F1-6|FUT10;nc|ENSG00000172728|Q6P4F1-4|FUT10	nc|ENSG00000172728|Q6P4F1-6|FUT10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.7733154296875	2	569.774396	1137.53424	-0.1028	-5.8573E-05	0.28684	0.00016344	0.18404	0.00010486	569.7745279378651	77.793	1.7871	77.632	77.311	79.098	-0.16196					81	41	5	0	0	0	0.79525	1	9289	9289		60.972	0	1	8885900			90161	8298;15991	62718	62820	100375	100375					-0.029025710018686368
YGTCTRFL	8	Unmodified	_YGTCTRFL_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	480.7314453125	2	480.73402	959.453487	-0.17875	-8.5931E-05	-4.0102	-0.0019278	-4.1889	-0.0020138	480.7320929835196	31.552	4.2201	31.564	28.598	32.818	0.011797					200	104	3	0	0	0	0.93274	2	2115	2115;2127		47.916	8.6628	1	6976400	+		90162	23986	62719	62821	100376;100377	100376					-0.02786130525748831
YGTENKFN	8	Unmodified	_YGTENKFN_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2156677246094	2	486.724707	971.43486	0.44184	0.00021505	-1.5233	-0.00074141	-1.0814	-0.00052636	486.7237909977064	97.233	0.97595	97.242	96.663	97.639	0.0089111					46	21	4	0	0	0	0.027866	1	12421	12421		31.955	13.693	1	264970	+		90163	22635	62720	62822	100378	100378					-0.05199968895942675
YGTENKFN	8	Unmodified	_YGTENKFN_					0	0	0			REV__IL4R-RBBP6|2|fusion	REV__IL4R-RBBP6|2|fusion	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	486.724707	971.43486	-0.24749	-0.00012046	-0.020448	-9.9524E-06	-0.26794	-0.00013041	486.7246724945474	97.361	1.1943	97.361	96.704	97.898	0	0.025362	0.00048671	NaN	31.955	54	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220010	+		90164	22635	62720	62822							-0.05199968895942675
YGTIVKMK	8	Unmodified	_YGTIVKMK_					0	0	0		chr8:93703688-93709771|150|11.19|0.63|4.15|+|0|CIBAR1,CIBAR1|1;ENST00000528023.3_1_15:41455975-41456569:+|nuORF;nc|ENSG00000188343|A1XBS5-2|CIBAR1;nc|ENSG00000188343|A1XBS5-4|CIBAR1;nc|ENSG00000188343|A1XBS5-3|CIBAR1;ENSG00000188343|ENST00000518322|CIBAR1	chr8:93703688-93709771|150|11.19|0.63|4.15|+|0|CIBAR1,CIBAR1|1	chr8:93703688-93709771|150|11.19|0.63|4.15|+|0|CIBAR1,CIBAR1|1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	470.2718505859375	2	470.270238	938.525924	-0.16956	-7.9741E-05	4.0588	0.0019087	3.8892	0.001829	470.2721071142879	88.694	1.1279	88.556	88.274	89.402	-0.13743					51	26	3	0	0	0	1.0516	1	10814	10814		29.15	3.6994	1	387220			90165	436	62721	62823	100379	100379					0.054202035478283506
YGTKGLKKVV	10	Unmodified	_YGTKGLKKVV_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8394775390625	2	546.842416	1091.67028	-0.40192	-0.00021979	-3.8257	-0.002092	-4.2276	-0.0023118	546.8404040333031	99.673	2.103	99.668	99.254	101.36	-0.0050812					109	52	6	0	0	0	1.1286	1	12781	12781		25.574	3.6142	1	10488000			90166	1282	62722	62824	100380	100380					0.12811168299458586
YGTLRLEAL	9	Unmodified	_YGTLRLEAL_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2974243164062	2	518.295299	1034.57605	-0.17628	-9.1363E-05	3.6713	0.0019028	3.495	0.0018114	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.33245	1	13192	13192		71.296	7.9894	1	66134000	+		90167	20291	62723	62825	100381	100381					0.060140294773418645
YGTLRLEAL	9	Unmodified	_YGTLRLEAL_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2974853515625	2	518.295299	1034.57605	-0.1979	-0.00010257	3.8078	0.0019735	3.6099	0.001871	518.2973986074476	102.7	2.9604	102.7	101.67	104.63	-0.0046082					228	70	5	0	0	0	0.39228	2	13158	13158;13170		66.429	9.6365	1	70878000	+		90168	20291	62723	62825	100382;100383	100382					0.060140294773418645
YGVFPILA	8	Unmodified	_YGVFPILA_					0	0	0		nc|ENSG00000197658|Q8N4F4-3|SLC22A24;ENSG00000197658|ENST00000612278|SLC22A24	nc|ENSG00000197658|Q8N4F4-3|SLC22A24	nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	440.85357666015625	2	440.252372	878.49019	-0.425	-0.00018711	-3.3481	-0.001474	-3.7731	-0.0016611	440.25066849276556	31.582	0.74688	31.341	31.073	31.82	-0.24109					23	18	2	0	0	0	0.027866	1	2173	2173		33.493	0.68056	1	121750			90169	10030	62724	62826	100384	100384					0.04608489362465207
YGVFPILA	8	Unmodified	_YGVFPILA_					0	0	0		nc|ENSG00000197658|Q8N4F4-3|SLC22A24;ENSG00000197658|ENST00000612278|SLC22A24	nc|ENSG00000197658|Q8N4F4-3|SLC22A24	nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	440.252372	878.49019	-0.07502	-3.3028E-05	-2.0407	-0.00089843	-2.1157	-0.00093146	440.2502632210282	31.41	0.98712	31.422	30.956	31.943	0.011797	0.040146	0.00069771	NaN	33.493	52	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124690			90170	10030	62724	62826							0.04608489362465207
YGVPTTSTPY	10	Unmodified	_YGVPTTSTPY_					0	0	0		nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	nc|ENSG00000164209|Q96AG3-3|SLC25A46	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	543.2947998046875	2	543.261122	1084.50769	-0.041897	-2.2761E-05	-2.6575	-0.0014437	-2.6994	-0.0014665	543.2610612409997	72.543	0.59644	72.278	72.084	72.681	-0.26479					23	13	3	0	0	0	0.03519	1	8526	8526		34.173	4.331	1	345900			90171	7240	62725	62827	100385	100385					-0.03118259893199138
YGVRSVTEECP	11	Unmodified	_YGVRSVTEECP_					0	0	0		ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	413.2453308105469	3	413.860656	1238.56014	-0.38394	-0.0001589	-3.2619	-0.00135	-3.6459	-0.0015089	413.8596180478502	31.164	0.32031	30.922	30.753	31.073	-0.24109					18	7	3	0	0	0	0.024762	1	2066	2066		51.528	5.6196	1	96998			90172	9126	62726	62828	100386	100386					-0.04960044821882548
YGVRSVTEECP	11	Unmodified	_YGVRSVTEECP_					0	0	0		ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	413.860656	1238.56014	-0.012851	-5.3187E-06	-3.1079	-0.0012862	-3.1207	-0.0012915	413.8593124190506	31.084	0.3202	30.932	30.765	31.085	-0.15231	0.015038	-0.00069444	NaN	51.528	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78610			90173	9126	62726	62828							-0.04960044821882548
YGWLTEIRA	9	Unmodified	_YGWLTEIRA_					0	0	0		ENSG00000154122|ENST00000284268|ANKH;nc|ENSG00000154122|Q9HCJ1-2|ANKH;ENST00000503939.5_1_5:14741448-14751330:-|nuORF;ENST00000515517.1_1_5:14741839-14746068:-|nuORF	ENSG00000154122|ENST00000284268|ANKH	ENSG00000154122|ENST00000284268|ANKH	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8048095703125	2	554.792924	1107.57129	-0.020578	-1.1416E-05	2.5829	0.001433	2.5623	0.0014216	554.794481286514	68.323	0.81184	68.065	67.657	68.469	-0.25827					39	19	3	0	0	0	0.024374	1	7877	7877		40.778	0	1	970080			90174	6383	62727	62829	100387	100387					0.02181145334543544
YGWNVDESF	9	Unmodified	_YGWNVDESF_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	557.7816162109375	2	558.735271	1115.45599	0.057724	3.2252E-05	1.3144	0.00073438	1.3721	0.00076664	559.2377232718801	86.373	0.52494	86.186	85.904	86.428	-0.18696					16	11	2	0	0	0	0.024487	1	10480	10480		31.955	20.444	1	27522	+		90175	20847	62728	62830	100388	100388					-0.09712003587105755
YGYIVAAILRI	11	Unmodified	_YGYIVAAILRI_					0	0	0		ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	626.3788452148438	2	626.376623	1250.73869	0.33644	0.00021074	4.4738	0.0028023	4.8103	0.003013	626.3792889018249	104.56	1.023	104.39	104.02	105.04	-0.16791					95	33	5	0	0	0	1.0429	1	13044	13044		3.1592	0	1	2470500			90176	10166	62729	62831	100389	100389					0.123354128793153
YGYRHRGV	8	Unmodified	_YGYRHRGV_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.766845703125	2	504.262125	1006.5097	-0.15096	-7.6121E-05	-4.2454	-0.0021408	-4.3964	-0.0022169	504.260219017642	66.728	0.31319	66.48	66.179	66.492	-0.2484					12	8	2	0	0	0	0.027866	1	7622	7622		20.482	11.66	1	2740200	+		90177	20738	62730	62832	100390	100390					0.006702584259528521
YGYRHRGV	8	Unmodified	_YGYRHRGV_					0	0	0			REV__ENSG00000084710|ENST00000403714|EFR3B	REV__ENSG00000084710|ENST00000403714|EFR3B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	504.262125	1006.5097	-0.40935	-0.00020642	-2.3113	-0.0011655	-2.7206	-0.0013719	504.2609346625292	66.611	0.35262	66.329	66.173	66.525	-0.28148	-0.075215	0.001001	NaN	13.775	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1767800	+		90178	20738	62730	62832							0.006702584259528521
YHCCWNTSYC	10	Unmodified	_YHCCWNTSYC_					0	0	0		nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-5|ZMYND11	nc|ENSG00000015171|Q15326-5|ZMYND11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	640.217529296875	2	640.220094	1278.42563	-1.4386	-0.00092099	-3.147	-0.0020148	-4.5855	-0.0029358	640.2184200072795	72.112	2.1334	71.837	71.473	73.606	-0.27509					150	51	6	0	0	0	1.0992	1	8494	8494		32.812	3.6424	1	22427000			90179	930	62731	62833	100391	100391					-0.20244144839784894
YHETEARGY	9	Unmodified	_YHETEARGY_					0	0	0			REV__nc|ENSG00000169918|Q8TE49|OTUD7A	REV__nc|ENSG00000169918|Q8TE49|OTUD7A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	562.7487182617188	2	563.25162	1124.48869	-0.17436	-9.8208E-05	-3.1659	-0.0017832	-3.3403	-0.0018814	563.2497317286081	106.41	0.30463	106.41	106.3	106.6	-0.0013199					11	8	2	0	0	0	0.024447	1	13628	13628		49.442	29.445	1	84467	+		90180	26417	62732	62834	100392	100392					-0.06857796464214516
YHKRLVDL	8	Unmodified	_YHKRLVDL_					0	0	0		nc|ENSG00000162004|A2IDD5|CCDC78;ENSG00000162004|ENST00000345165|CCDC78;ENST00000485091.5_1_16:772680-775160:-|nuORF	nc|ENSG00000162004|A2IDD5|CCDC78	nc|ENSG00000162004|A2IDD5|CCDC78	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	522.3046264648438	2	522.303458	1042.59236	1.6118	0.00084183	-3.0254	-0.0015802	-1.4137	-0.00073837	522.3017840392192	82.772	0.85864	82.662	82.336	83.195	-0.11006					67	19	5	0	0	0	0.59392	1	10288	10288		76.847	4.9692	1	2883600			90181	6909	62733	62835	100393	100393					0.07277155434076121
YHPHWHFWWDR	11	Unmodified	_YHPHWHFWWDR_					0	0	0		ENST00000331803.8_1_7:48142961-48146533:+|nuORF	ENST00000331803.8_1_7:48142961-48146533:+|nuORF	ENST00000331803.8_1_7:48142961-48146533:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	556.2958374023438	3	556.25321	1665.7378	-0.91519	-0.00050908	-2.4054	-0.001338	-3.3206	-0.0018471	556.5848666255944	30.774	0.20385	30.774	30.675	30.879	0					7	4	2	0	0	0	0.024902	1	1994	1994		3.4087	1.8857	1	27281			90182	12348	62734	62836	100394	100394					-0.06843988717059801
YHRRRRRRRRR	11	Unmodified	_YHRRRRRRRRR_					0	0	0			REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.35302734375	3	575.354878	1723.0428	0.074838	4.3058E-05	-3.754	-0.0021599	-3.6791	-0.0021168	575.3526068131175	46.561	0.49494	46.464	46.259	46.754	-0.096653					53	13	5	0	0	0	1.1135	1	4493	4493		1.3219	0.95051	1	15650000	+		90183	30566	62735	62837	100395	100395					0.21020464990328946
YHTKGVRPR	9	Unmodified	_YHTKGVRPR_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3178100585938	2	557.317432	1112.62031	-0.13902	-7.7481E-05	0.4646	0.00025893	0.32557	0.00018145	557.3174457265237	69.763	0.97316	69.775	69.131	70.104	0.012421					87	24	5	0	0	0	1.0101	1	8373	8373		18.324	3.6603	1	9234900	+		90184	27306	62736	62838	100396	100396					0.0685047841418509
YHVASRCHS	9	Unmodified	_YHVASRCHS_					0	0	0			REV__ENST00000471172.1_1_10:112590820-112591150:+|nuORF;REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	530.2408447265625	2	530.243075	1058.4716	-1.6646	-0.00088263	-2.4215	-0.001284	-4.0861	-0.0021666	530.2417220414414	110.58	0.98775	110.44	109.89	110.88	-0.13983					75	39	2	0	0	0	0.83071	1	13539	13539		37.159	9.2769	1	68316	+		90185	28550;33168	62737	62839	100397	100397					-0.055299955510463406
YHVAYVLVC	9	Unmodified	_YHVAYVLVC_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000538984.1_1_12:26564247-26572125:-|nuORF	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.247802734375	2	533.773145	1065.53174	-0.66176	-0.00035323	-0.39021	-0.00020829	-1.052	-0.00056152	533.7733534986771	49.26	0.37041	48.98	48.791	49.161	-0.27977					16	9	2	0	0	0	0.024389	1	4911	4911		49.211	18.707	1	114980			90186	3956	62738	62840	100398	100398					0.0015930205947825016
YHVSSRIF	8	Unmodified	_YHVSSRIF_					0	0	0			REV__CENPI|p.H741Y|1|0.43|ENSG00000102384|chrX:101162917-101162917|C/T|missense_variant	REV__CENPI|p.H741Y|1|0.43|ENSG00000102384|chrX:101162917-101162917|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7666931152344	2	504.766709	1007.51886	-0.17127	-8.645E-05	-0.57336	-0.00028942	-0.74463	-0.00037587	504.7664533006264	66.203	1.5138	65.962	64.964	66.478	-0.24145					123	37	5	0	0	0	0.56067	1	7597	7597		79.939	4.8959	1	22119000	+		90187	19291	62739	62841	100399	100399					0.015406069916252818
YIAARREP	8	Unmodified	_YIAARREP_					0	0	0			REV__ENSG00000086504|ENST00000199706|MRPL28	REV__ENSG00000086504|ENST00000199706|MRPL28	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	487.2818603515625	2	488.272158	974.529764	-1.0598	-0.00051746	-0.36565	-0.00017853	-1.4254	-0.00069599	488.27186364068353	65.62	0.6185	65.406	65.175	65.794	-0.21327					34	14	3	0	0	0	0.027866	1	7493	7493		25.45	0	1	791170	+		90188	20773	62740	62842	100400	100400					0.041480093658947226
YIACTHLHA	9	Unmodified	_YIACTHLHA_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3;ENST00000574662.1_2_16:68395424-68404839:-|nuORF;ENST00000566009.5_1_16:68398402-68404929:-|nuORF;ENST00000567811.1_1_16:68398525-68404929:-|nuORF	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	513.7880859375	2	514.752744	1027.49094	-0.71781	-0.00036949	3.2253	0.0016602	2.5075	0.0012907	514.7542428348597	27.451	1.0034	27.451	27.109	28.113	0					61	26	4	0	0	0	0.024466	1	1556	1556		33.516	1.5607	1	587170			90189	2462	62741	62843	100401	100401					-0.021710392601335116
YIACTHLHA	9	Unmodified	_YIACTHLHA_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3;ENST00000574662.1_2_16:68395424-68404839:-|nuORF;ENST00000566009.5_1_16:68398402-68404929:-|nuORF;ENST00000567811.1_1_16:68398525-68404929:-|nuORF	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	514.752744	1027.49094	-1.4681	-0.00075573	4.0597	0.0020897	2.5915	0.001334	514.754691726905	27.011	0.69883	27.093	26.799	27.498	0.081293	-0.38123	0.00080031	NaN	33.516	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	767040			90190	2462	62741	62843							-0.021710392601335116
YIACTHLHA	9	Unmodified	_YIACTHLHA_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3;ENST00000574662.1_2_16:68395424-68404839:-|nuORF;ENST00000566009.5_1_16:68398402-68404929:-|nuORF;ENST00000567811.1_1_16:68398525-68404929:-|nuORF	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.752744	1027.49094	-0.43479	-0.00022381	3.158	0.0016256	2.7233	0.0014018	514.7542703063574	27.909	0.58909	27.664	27.332	27.921	-0.24524	0.19014	-0.00012794	NaN	33.516	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198390			90191	2462	62741	62843							-0.021710392601335116
YIACTHLHA	9	Unmodified	_YIACTHLHA_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3;ENST00000574662.1_2_16:68395424-68404839:-|nuORF;ENST00000566009.5_1_16:68398402-68404929:-|nuORF;ENST00000567811.1_1_16:68398525-68404929:-|nuORF	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	514.752744	1027.49094	-0.80401	-0.00041387	3.3988	0.0017495	2.5947	0.0013357	514.7543534090955	27.763	0.61391	27.595	27.273	27.887	-0.16816	0.1208	0.00011987	NaN	33.516	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328820			90192	2462	62741	62843							-0.021710392601335116
YIACTHLHA	9	Unmodified	_YIACTHLHA_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3;ENST00000574662.1_2_16:68395424-68404839:-|nuORF;ENST00000566009.5_1_16:68398402-68404929:-|nuORF;ENST00000567811.1_1_16:68398525-68404929:-|nuORF	nc|ENSG00000103056|Q9NY59-2|SMPD3	nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	514.752744	1027.49094	-0.24701	-0.00012715	2.5918	0.0013341	2.3448	0.001207	514.7539179305923	27.829	0.53134	27.677	27.353	27.885	-0.15195	0.203	-0.00071089	NaN	33.516	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387130			90193	2462	62741	62843							-0.021710392601335116
YIAGHRDDVI	10	Unmodified	_YIAGHRDDVI_					0	0	0			REV__ENSG00000136213|ENST00000618655|CHST12	REV__ENSG00000136213|ENST00000618655|CHST12	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.8035888671875	2	579.798737	1157.58292	-0.26426	-0.00015322	2.1877	0.0012684	1.9234	0.0011152	579.7996046170886	59.106	0.76642	58.918	58.663	59.43	-0.18795					27	18	2	0	0	0	0.03519	1	6531	6531		53.351	25.469	1	717290	+		90194	23639	62742	62844	100402	100402					0.010433423579115697
YIAIVQATK	9	Unmodified	_YIAIVQATK_					0	0	0		ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.77911376953125	2	503.800217	1005.58588	-0.031961	-1.6102E-05	2.2635	0.0011404	2.2316	0.0011243	503.79959289572963	71.4	0.45469	71.138	70.908	71.363	-0.26199					19	10	2	0	0	0	0.024288	1	8330	8330		29.17	0	1	521620			90195	3214	62743	62845	100403	100403					0.083312174826915
YIAKKPKTI	9	Unmodified	_YIAKKPKTI_					0	0	0		ENSG00000172167|ENST00000305949|MTBP;ENST00000522449.1_1_8:121475935-121483203:+|nuORF	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	532.2885131835938	2	531.33951	1060.66447	-0.76121	-0.00040446	-1.0973	-0.00058305	-1.8585	-0.00098751	531.3387605308167	84.965	1.4155	84.907	84.605	86.02	-0.05761					56	33	2	0	0	0	0.024527	1	10741	10741		31.53	0	1	229330			90196	8249	62744	62846	100404	100404					0.13656069787793967
YIAKKVLNTG	10	Unmodified	_YIAKKVLNTG_					0	0	0			REV__nc|ENSG00000139977|Q147X3-2|NAA30	REV__nc|ENSG00000139977|Q147X3-2|NAA30	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8304443359375	2	553.832049	1105.64954	-0.33256	-0.00018418	-3.5028	-0.00194	-3.8354	-0.0021241	553.8300063021363	89.188	3.5116	89.06	88.157	91.668	-0.12774					312	83	5	0	0	0	1.0992	2	10857	10857;11112		32.812	0.061884	1	6921700	+		90197	23979	62745	62847	100405;100406	100405					0.10094577919812764
YIAKKVLNTG	10	Unmodified	_YIAKKVLNTG_					0	0	0			REV__nc|ENSG00000139977|Q147X3-2|NAA30	REV__nc|ENSG00000139977|Q147X3-2|NAA30	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	553.8301391601562	2	553.832049	1105.64954	-0.066307	-3.6723E-05	-3.7265	-0.0020638	-3.7928	-0.0021006	553.8298650576118	87.201	2.5723	87.064	85.66	88.232	-0.13734					190	60	4	0	0	0	1.0393	2	10575	10575;10609		40.778	2.9666	1	1623500	+		90198	23979	62745	62847	100407;100408	100407					0.10094577919812764
YIASHLKAL	9	Unmodified	_YIASHLKAL_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	507.7841796875	2	508.300384	1014.58622	-0.22121	-0.00011244	-0.68313	-0.00034724	-0.90434	-0.00045968	508.2998627431642	73.166	0.50072	73.176	72.901	73.402	0.0096512					20	12	2	0	0	0	0.024477	1	8812	8812		35.618	1.4457	1	184160	+		90199	23699	62746	62848	100409	100409					0.07950637202554844
YICDRFYPND	10	Unmodified	_YICDRFYPND_					0	0	0		nc|ENSG00000121966|P61073-2|CXCR4;ENSG00000121966|ENST00000241393|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	nc|ENSG00000121966|P61073-2|CXCR4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	435.2724304199219	3	435.857134	1304.54957	0.188	8.1942E-05	-0.97146	-0.00042342	-0.78346	-0.00034148	435.85644395013526	33.774	0.59607	33.83	33.5	34.096	0.056572					20	14	2	0	0	0	0.03519	1	2425	2425		20.03	0	1	89963			90200	3902	62747	62849	100410	100410					-0.09052027476309377
YICLEEDRPV	10	Unmodified	_YICLEEDRPV_					0	0	0			REV__ENSG00000170209|ENST00000303941|ANKK1	REV__ENSG00000170209|ENST00000303941|ANKK1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	412.1874694824219	3	412.869151	1235.58562	0.37099	0.00015317	2.8248	0.0011663	3.1958	0.0013195	412.87021285534695	35.778	0.68945	35.579	35.403	36.093	-0.19829					33	19	2	0	0	0	0.03519	1	2717	2717		26.063	0	1	763970	+		90201	26444	62748	62850	100411	100411					-0.022745702994598105
YICSVGDLLL	10	Unmodified	_YICSVGDLLL_					0	0	0		ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	548.2916870117188	2	548.291368	1094.56818	-0.10431	-5.7194E-05	0.090593	4.9671E-05	-0.013721	-7.5231E-06	548.2912874589512	72.393	1.0181	72.393	72.054	73.072	0					57	24	4	0	0	0	0.75995	1	8823	8823		63.306	8.53	1	8457700			90202	12707	62749	62851	100412	100412					0.02468134165542324
YICVAIPIM	9	Unmodified	_YICVAIPIM_					0	0	0			REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	510.7890930175781	2	511.774299	1021.53405	0.52018	0.00026622	-2.0456	-0.0010469	-1.5254	-0.00078065	511.772955859364	82.72	0.43572	82.5	82.217	82.652	-0.22015					14	9	2	0	0	0	0.024541	1	9929	9929		29.842	0	1	170440	+		90203	22024	62750	62852	100413	100413					0.024140144729358326
YIDAQFEAY	9	Unmodified	_YIDAQFEAY_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.3236694335938	2	560.253297	1118.49204	0.69327	0.00038841	-0.70602	-0.00039555	-0.012752	-7.1444E-06	560.2529400668197	68.096	1.147	67.841	67.367	68.514	-0.25516					75	27	4	0	0	0	0.024017	1	7856	7856		85.161	37.245	1	3252900			90204	9557	62751	62853	100414	100414					-0.06246546410238807
YIDAQFEAY	9	Unmodified	_YIDAQFEAY_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	560.3238525390625	2	560.253297	1118.49204	0.3039	0.00017026	-0.24755	-0.00013869	0.056351	3.1571E-05	560.2531768313767	68.104	1.1274	67.87	67.429	68.557	-0.23376					84	27	5	0	0	0	0.022704	1	7864	7864		101.25	52.042	1	3300800			90205	9557	62751	62853	100415	100415					-0.06246546410238807
YIDAQFENY	9	Unmodified	_YIDAQFENY_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-3|SEPTIN8	nc|ENSG00000164402|Q92599-2|SEPTIN8	nc|ENSG00000164402|Q92599-2|SEPTIN8	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.7562255859375	2	581.756204	1161.49785	-0.38739	-0.00022537	1.3635	0.00079324	0.97613	0.00056787	581.7566695116902	65.537	0.86224	65.295	65.045	65.907	-0.24145					43	20	4	0	0	0	0.17845	1	7486	7486		93.143	24.356	1	1379200			90206	7274	62752	62854	100416	100416					-0.07643447898567501
YIDAQFENY	9	Unmodified	_YIDAQFENY_					0	0	0		nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000371478.2_1_5:132097291-132101152:-|nuORF;nc|ENSG00000164402|Q92599-3|SEPTIN8	nc|ENSG00000164402|Q92599-2|SEPTIN8	nc|ENSG00000164402|Q92599-2|SEPTIN8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	582.2930297851562	2	581.756204	1161.49785	-2.0063	-0.0011672	3.0174	0.0017554	1.011	0.00058818	581.7576963776193	65.456	0.53674	65.243	65.175	65.712	-0.21327					30	12	4	0	0	0	0.023655	1	7477	7477		90.37	15.327	1	1481300			90207	7274	62752	62854	100417	100417					-0.07643447898567501
YIDCLFDASP	10	Carbamidomethyl (C)	_YIDC(Carbamidomethyl (C))LFDASP_	YIDC(1)LFDASP		YIDC(79)LFDASP		0	1	0			REV__nc|ENSG00000019186|Q07973-3|CYP24A1	REV__nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	600.8203735351562	2	600.765714	1199.51688	-1.2544	-0.00075361	4.1493	0.0024928	2.8949	0.0017392	600.7680820432178	66.974	0.53838	66.998	66.812	67.35	0.023903					28	12	3	0	0	0	0.03519	1	7935	7935		79.451	13.986	1	296290	+		90208	19986	62753	62855	100418	100418	256				-0.07490234599185897
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(160)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	544.2606201171875	2	543.754815	1085.49508	-1.0199	-0.00055457	0.1358	7.3843E-05	-0.88409	-0.00048073	543.7547278317155	66.8	0.48669	66.518	66.432	66.918	-0.28148					23	13	2	0	0	0	0.014907	1	7926	7926		162.31	37.711	1	841630			90209	11064	62754	62856	100419	100419		459			-0.04425039347756865
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(110)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	543.755126953125	2	543.754815	1085.49508	-1.0299	-0.00056004	0.48858	0.00026567	-0.54136	-0.00029437	543.7547285995051	66.496	0.71158	66.526	66.365	67.077	0.030106					25	18	2	0	0	0	0.096521	1	7833	7833		111.65	43.164	1	1088700			90210	11064	62754	62856	100420	100420		459			-0.04425039347756865
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(63)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MSMS	OPSCC_40_ClassI_Rep-2	5	543.7529296875	2	543.754815	1085.49508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.942	1	66.719	66.219	67.219	-0.22374								0	0	0	0.37385	1	7695	7695		63.306	20.442	1				90211	11064	62754	62856	100421	100421		459			-0.04425039347756865
YIDDTLTMV	9	Oxidation (M)	_YIDDTLTM(Oxidation (M))V_		YIDDTLTM(1)V		YIDDTLTM(120)V	0	0	1		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MSMS	OPSCC_40_ClassI_Rep-3	6	543.7555541992188	2	543.754815	1085.49508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.861	1	66.616	66.116	67.116	-0.24517								0	0	0	0.035282	1	7674	7674		115.46	59.955	1				90212	11064	62754	62856	100422	100422		459			-0.04425039347756865
YIDDTLTMV	9	Unmodified	_YIDDTLTMV_					0	0	0		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.7566528320312	2	535.757358	1069.50016	-0.24136	-0.00012931	0.086608	4.6401E-05	-0.15475	-8.2908E-05	535.7569960181784	76.584	1.3414	76.316	75.506	76.848	-0.26807					69	32	4	0	0	0	0.25032	2	9088	9076;9088		82.305	13.82	1	1288200			90213	11064	62754	62857	100423;100424	100424					-0.03180735485125297
YIDDTLTMV	9	Unmodified	_YIDDTLTMV_					0	0	0		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.7562866210938	2	535.757358	1069.50016	-0.27918	-0.00014957	0.23118	0.00012385	-0.048006	-2.572E-05	535.7570445296388	76.556	1.4973	76.304	75.326	76.823	-0.25162					80	36	4	0	0	0	0.17455	2	9085	9085;9096		94.006	40.655	1	1513100			90214	11064	62754	62857	100425;100426	100425					-0.03180735485125297
YIDDTLTMV	9	Unmodified	_YIDDTLTMV_					0	0	0		nc|ENSG00000278311|Q9H3C7-2|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;ENSG00000278311|ENST00000613102|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	nc|ENSG00000278311|Q9H3C7-2|GGNBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.7568359375	2	535.757358	1069.50016	-0.60961	-0.0003266	0.045861	2.4571E-05	-0.56375	-0.00030203	535.7571130789095	76.406	1.544	76.237	75.436	76.98	-0.16853					57	34	3	0	0	0	0.27161	1	9070	9070		79.451	22.73	1	1519100			90215	11064	62754	62857	100427	100427					-0.03180735485125297
YIDDVFHAL	9	Unmodified	_YIDDVFHAL_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	547.33154296875	2	546.771657	1091.52876	-0.37379	-0.00020438	-0.74518	-0.00040744	-1.119	-0.00061182	546.7709844270463	74.243	0.62938	73.984	73.78	74.409	-0.25887					33	14	3	0	0	0	0.022643	1	9042	9042		76.847	21.342	1	864870			90216	5673	62755	62858	100428	100428					-0.013342497936719155
YIDDVFHAL	9	Unmodified	_YIDDVFHAL_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	546.771657	1091.52876	0.75309	0.00041177	-1.6627	-0.00090913	-0.90964	-0.00049737	546.7706126882656	73.985	0.89154	73.985	73.784	74.676	0	0.0027747	-0.001245	NaN	76.847	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025800			90217	5673	62755	62858							-0.013342497936719155
YIDDVFHAL	9	Unmodified	_YIDDVFHAL_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	546.771657	1091.52876	-1.2364	-0.00067601	0.20068	0.00010972	-1.0357	-0.00056629	546.7715031246255	73.969	0.89534	73.978	73.753	74.648	0.0096512	-0.0042258	0.00079273	NaN	76.847	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	997860			90218	5673	62755	62858							-0.013342497936719155
YIDEEMKRY	9	Oxidation (M)	_YIDEEM(Oxidation (M))KRY_		YIDEEM(1)KRY		YIDEEM(240)KRY	0	0	1			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	631.787109375	2	631.789721	1261.56489	-0.33567	-0.00021208	-2.9064	-0.0018362	-3.242	-0.0020483	631.787889390728	53.995	2.2743	53.798	53.489	55.763	-0.19739					184	64	6	0	0	0	0.0089939	1	5705	5705		237.81	8.4861	1	39527000	+		90219	20191	62756	62859	100429	100429		623			-0.055431606791216836
YIDEHGHT	8	Unmodified	_YIDEHGHT_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	486.21502685546875	2	486.214506	970.414459	0.2656	0.00012914	0.17996	8.7501E-05	0.44557	0.00021664	486.2145138310673	101.61	2.0628	101.48	100.65	102.72	-0.12576					137	50	3	0	0	0	0.97924	1	12697	12697		40.573	7.7602	1	181460			90220	5810	62757	62860	100430	100430					-0.07193139555761263
YIDELLTYI	9	Unmodified	_YIDELLTYI_					0	0	0		ENSG00000010932|ENST00000617670|FMO1;nc|ENSG00000010932|Q01740-2|FMO1	ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.802490234375	2	571.802623	1141.59069	0.92389	0.00052828	-0.52836	-0.00030212	0.39552	0.00022616	571.8019871978865	97.42	1.1521	97.284	96.702	97.854	-0.1367					47	25	3	0	0	0	0.31247	2	12039	12039;12051		73.975	18.929	1	224250			90221	883	62758	62861	100431;100432	100431					0.025560568348055313
YIDELLTYI	9	Unmodified	_YIDELLTYI_					0	0	0		ENSG00000010932|ENST00000617670|FMO1;nc|ENSG00000010932|Q01740-2|FMO1	ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.8032836914062	2	571.802623	1141.59069	1.1019	0.00063005	-0.91815	-0.000525	0.18372	0.00010505	571.8018161509672	97.408	0.75896	97.285	96.929	97.688	-0.12368					40	16	3	0	0	0	0.43973	2	12046	12046;12064		63.306	13.865	1	223040			90222	883	62758	62861	100433;100434	100433					0.025560568348055313
YIDELLTYI	9	Unmodified	_YIDELLTYI_					0	0	0		ENSG00000010932|ENST00000617670|FMO1;nc|ENSG00000010932|Q01740-2|FMO1	ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.8033447265625	2	571.802623	1141.59069	-0.16341	-9.3438E-05	0.77557	0.00044347	0.61216	0.00035004	571.8026465322533	97.478	0.8983	97.317	96.862	97.76	-0.16106					47	19	4	0	0	0	0.59099	1	12050	12050		53.351	7.3792	1	218730			90223	883	62758	62861	100435	100435					0.025560568348055313
YIDELLTYI	9	Unmodified	_YIDELLTYI_					0	0	0		ENSG00000010932|ENST00000617670|FMO1;nc|ENSG00000010932|Q01740-2|FMO1	ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	571.802623	1141.59069	-0.87925	-0.00050276	1.2962	0.0007412	0.417	0.00023844	571.8027742943806	97.514	0.66493	97.514	97.191	97.856	0	0.11193	0.0016665	NaN	73.975	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39161			90224	883	62758	62861							0.025560568348055313
YIDELLTYI	9	Unmodified	_YIDELLTYI_					0	0	0		ENSG00000010932|ENST00000617670|FMO1;nc|ENSG00000010932|Q01740-2|FMO1	ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	571.802623	1141.59069	0.45117	0.00025798	-0.32227	-0.00018428	0.1289	7.3705E-05	571.802035565485	97.414	0.97598	97.423	96.751	97.727	0.0089111	0.020809	-0.0001844	NaN	73.975	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48643			90225	883	62758	62861							0.025560568348055313
YIDELLTYI	9	Unmodified	_YIDELLTYI_					0	0	0		ENSG00000010932|ENST00000617670|FMO1;nc|ENSG00000010932|Q01740-2|FMO1	ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	571.802623	1141.59069	0.2534	0.00014489	0.32559	0.00018617	0.57899	0.00033107	572.304828903335	97.594	0.57933	97.592	97.233	97.813	-0.0020752	0.18923	0.0005565	NaN	73.975	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45064			90226	883	62758	62861							0.025560568348055313
YIDENQDRY	9	Unmodified	_YIDENQDRY_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;CNDP2|p.I80Afs*51|1|0.17|ENSG00000133313|chr18:74505880-74505884|CTATT/-|frameshift_variant;ENST00000582620.5_1_18:72167208-72179735:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	608.2674560546875	2	608.267467	1214.52038	-0.64721	-0.00039367	0.69338	0.00042176	0.046174	2.8086E-05	608.2677947257254	36.974	1.0141	36.781	36.455	37.469	-0.193					72	25	5	0	0	0	0.016249	2	2940	2928;2940		204.42	124.71	1	3540500			90227	4701	62759	62862	100436;100437	100437					-0.0782984850095545
YIDENQDRY	9	Unmodified	_YIDENQDRY_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;CNDP2|p.I80Afs*51|1|0.17|ENSG00000133313|chr18:74505880-74505884|CTATT/-|frameshift_variant;ENST00000582620.5_1_18:72167208-72179735:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.2673950195312	2	608.267467	1214.52038	-0.78001	-0.00047445	0.78488	0.00047742	0.0048697	2.9621E-06	608.2678798371475	36.927	0.86588	36.708	36.405	37.271	-0.2195					62	21	5	0	0	0	0.013442	3	2916	2916;2926;2940		177.3	103.05	1	3560300			90228	4701	62759	62862	100438;100439;100440	100438					-0.0782984850095545
YIDENQDRY	9	Unmodified	_YIDENQDRY_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;CNDP2|p.I80Afs*51|1|0.17|ENSG00000133313|chr18:74505880-74505884|CTATT/-|frameshift_variant;ENST00000582620.5_1_18:72167208-72179735:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	608.2673950195312	2	608.267467	1214.52038	0.77598	0.000472	-0.83445	-0.00050757	-0.058465	-3.5563E-05	608.2669119751739	36.866	0.86833	36.657	36.364	37.232	-0.2092					70	21	5	0	0	0	0.013442	3	2908	2897;2908;2921		204.42	127.65	1	3402500			90229	4701	62759	62862	100441;100442;100443	100442					-0.0782984850095545
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000484167.5_1_2:242276764-242276932:+|nuORF	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	631.7884521484375	2	631.788035	1261.56152	-1.6372	-0.0010344	1.2436	0.00078567	-0.39361	-0.00024868	631.7888052383958	53.931	1.8017	53.795	53.496	55.298	-0.13617					176	52	5	0	0	0	0.011521	4	5671	5671;5694;5719;5731		229.33	38.809	1	42932000			90230	7815	62760	62863	100444;100445;100446;100447	100444					-0.058800874614689747
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000484167.5_1_2:242276764-242276932:+|nuORF	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	631.7882080078125	2	631.788035	1261.56152	-0.61164	-0.00038643	0.16954	0.00010712	-0.44209	-0.00027931	631.7881691272743	54.107	2.4839	53.862	53.525	56.009	-0.2453					194	72	6	0	0	0	0.011521	6	5698	5688;5698;5709;5721;5733;5748		261.4	50.007	1	42111000			90231	7815	62760	62863	100448;100449;100450;100451;100452;100453	100449					-0.058800874614689747
YIDEQFERY	9	Unmodified	_YIDEQFERY_					0	0	0		nc|ENSG00000168385|Q15019-2|SEPTIN2;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000484167.5_1_2:242276764-242276932:+|nuORF	nc|ENSG00000168385|Q15019-2|SEPTIN2	nc|ENSG00000168385|Q15019-2|SEPTIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	631.7877807617188	2	631.788035	1261.56152	-0.33568	-0.00021208	-0.2387	-0.00015081	-0.57438	-0.00036288	631.787889390728	53.995	2.2743	53.798	53.489	55.763	-0.19739					184	64	6	0	0	0	0.011521	6	5681	5670;5681;5693;5717;5731;5742		229.33	22.705	1	39527000			90232	7815	62760	62863	100454;100455;100456;100457;100458;100459	100455					-0.058800874614689747
YIDSKFEDY	9	Unmodified	_YIDSKFEDY_					0	0	0		ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	590.2640991210938	2	590.263862	1178.51317	-0.29707	-0.00017535	0.69838	0.00041223	0.40131	0.00023688	590.2640917927731	53.002	0.66565	52.875	52.552	53.217	-0.12705					53	16	5	0	0	0	0.034407	2	5532	5521;5532		138.06	47.693	1	2019800			90233	3929;13629	62761	62864	100460;100461	100461					-0.06894581101369113
YIDSKFEDY	9	Unmodified	_YIDSKFEDY_					0	0	0		ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	590.263916015625	2	590.263862	1178.51317	-0.42876	-0.00025308	0.6526	0.00038521	0.22385	0.00013213	590.2640275090032	53.223	0.79395	52.965	52.683	53.477	-0.25838					62	20	5	0	0	0	0.034407	1	5557	5557		138.06	36.462	1	2599900			90234	3929;13629	62761	62864	100462	100462					-0.06894581101369113
YIDSKFEDY	9	Unmodified	_YIDSKFEDY_					0	0	0		ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000449219.2_1_1:224190265-224197055:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000489259.5_1_10:38674311-38691690:-|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7	ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.2637939453125	2	590.263862	1178.51317	-0.60437	-0.00035674	0.7566	0.0004466	0.15223	8.9858E-05	590.2641428416373	53.022	0.77266	52.832	52.51	53.283	-0.18982					60	19	5	0	0	0	0.041068	2	5521	5521;5532		132.76	39.562	1	2921800			90235	3929;13629	62761	62864	100463;100464	100463					-0.06894581101369113
YIEDAHQT	8	Unmodified	_YIEDAHQT_					0	0	0			REV__ENST00000375165.5_1_9:100368507-100388213:-|nuORF	REV__ENST00000375165.5_1_9:100368507-100388213:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.25	2	488.722164	975.429775	-0.41604	-0.00020333	-2.3701	-0.0011583	-2.7862	-0.0013617	488.7209327279985	26.29	2.3762	26.29	24.697	27.073	0					72	56	2	0	0	0	0.027866	1	1302	1302		50.025	19.521	1	77457	+		90236	23704	62762	62865	100465	100465					-0.0589227275858093
YIEDAHQT	8	Unmodified	_YIEDAHQT_					0	0	0			REV__ENST00000375165.5_1_9:100368507-100388213:-|nuORF	REV__ENST00000375165.5_1_9:100368507-100388213:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.2500305175781	2	488.722164	975.429775	-0.42715	-0.00020876	-2.2092	-0.0010797	-2.6364	-0.0012884	488.72096740841334	25.794	1.9555	25.874	25.215	27.17	0.08009					67	47	2	0	0	0	0.027866	1	1184	1184		30.504	12.179	1	84264	+		90237	23704	62762	62865	100466	100466					-0.0589227275858093
YIEKIAKNLD	10	Unmodified	_YIEKIAKNLD_					0	0	0		ENST00000506524.5_1_5:145862104-145889630:+|nuORF;ENST00000514567.5_1_5:145883057-145883965:+|nuORF;ENST00000514719.1_1_5:145883057-145886815:+|nuORF;ENST00000509787.1_1_5:145882841-145883656:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	ENST00000506524.5_1_5:145862104-145889630:+|nuORF;nc|ENSG00000113649|O14776-2|TCERG1	ENST00000506524.5_1_5:145862104-145889630:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.8107299804688	2	603.840071	1205.66559	-0.10603	-6.4023E-05	0.7713	0.00046574	0.66527	0.00040172	603.8411868151019	63.154	0.12513	62.895	62.835	62.96	-0.25824					4	2	2	0	0	0	0.03519	1	7119	7119		112.41	5.4034	1	96666			90238	15745;3316	62763	62866	100467	100467					0.07098239366041525
YIELKLMS	8	Unmodified	_YIELKLMS_					0	0	0			REV__nc|ENSG00000152582|Q9C093-4|SPEF2	REV__nc|ENSG00000152582|Q9C093-4|SPEF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7776794433594	2	498.775354	995.536154	-0.30801	-0.00015363	3.976	0.0019831	3.668	0.0018295	498.77724968102837	26.659	0.66729	26.49	26.224	26.892	-0.16816					37	15	4	0	0	0	1.043	1	1411	1411		30.504	2.6214	1	597570	+		90239	36790	62764	62867	100468	100468					0.038207664823971754
YIENLWITL	9	Unmodified	_YIENLWITL_					0	0	0		nc|ENSG00000175354|P17706-4|PTPN2	nc|ENSG00000175354|P17706-4|PTPN2	nc|ENSG00000175354|P17706-4|PTPN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	583.7767333984375	2	582.818607	1163.62266	-1.0214	-0.00059531	-2.5193	-0.0014683	-3.5408	-0.0020636	582.8167282408534	63.201	0.32609	63.017	62.83	63.157	-0.18386					13	7	2	0	0	0	0.024523	1	7130	7130		29.15	14.285	1	219410			90240	18532	62765	62868	100469	100469					0.04739469308628941
YIERKKTIKII	11	Unmodified	_YIERKKTIKII_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	468.2278747558594	3	468.969417	1403.88642	-0.032592	-1.5285E-05	3.7115	0.0017406	3.679	0.0017253	468.9709925010641	49.277	0.71619	48.997	48.718	49.434	-0.27977					35	18	3	0	0	0	0.024873	1	4979	4979		9.6461	8.3242	1	237880			90241	7940	62766	62869	100470	100470					0.20063304413315564
YIEVPLIF	8	Unmodified	_YIEVPLIF_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.2535400390625	2	497.286411	992.55827	-0.208	-0.00010344	-2.6587	-0.0013221	-2.8667	-0.0014256	497.2840648897579	49.419	1.0215	49.266	48.611	49.632	-0.15277					65	27	3	0	0	0	0.027866	1	5117	5117		65.897	16.456	1	1523300			90242	3468	62767	62870	100471	100471					0.0616931422248399
YIEVPLIF	8	Unmodified	_YIEVPLIF_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	497.286411	992.55827	0.54647	0.00027175	-3.1717	-0.0015772	-2.6252	-0.0013055	497.2836764409284	49.217	1.5691	49.217	48.344	49.913	0	-0.026294	0.0012359	NaN	65.897	92	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1623900			90243	3468	62767	62870							0.0616931422248399
YIEVPLIF	8	Unmodified	_YIEVPLIF_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	497.286411	992.55827	-1.0692	-0.00053172	-1.1873	-0.00059043	-2.2565	-0.0011222	497.28468611965235	49.153	1.5682	49.227	48.309	49.877	0.074196	-0.016661	0.0032095	NaN	65.897	93	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1535100			90244	3468	62767	62870							0.0616931422248399
YIEVPQVE	8	Unmodified	_YIEVPQVE_					0	0	0			REV__ENSG00000213186|ENST00000309784|TRIM59;REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	REV__nc|ENSG00000068885|Q9P2H3-3|IFT80	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	488.770263671875	2	488.752933	975.491313	-1.081	-0.00052834	-1.1238	-0.00054924	-2.2048	-0.0010776	488.7522108711188	29.046	2.3518	29.046	26.908	29.26	0					101	59	4	0	0	0	0.027866	1	1718	1718		34.173	0	1	2840500	+		90245	36468;28731	62768	62871	100472	100472					0.002586589407201245
YIFEEPFTI	9	Unmodified	_YIFEEPFTI_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	579.7908935546875	2	579.789515	1157.56448	-1.1341	-0.00065752	0.99789	0.00057857	-0.13618	-7.8958E-05	579.7900444149958	94.336	1.6309	94.336	93.888	95.519	0					99	38	4	0	0	0	0.016838	3	12060	12060;12071;12084		152.63	70.393	1	1181800			90246	6280	62769	62872	100473;100474;100475	100473					-0.008002123366622982
YIFEEPFTI	9	Unmodified	_YIFEEPFTI_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.7911376953125	2	579.789515	1157.56448	-0.6585	-0.00038179	0.54883	0.00031821	-0.10967	-6.3585E-05	579.7897504171942	94.266	1.5608	94.266	93.951	95.512	-0.00022888					78	36	4	0	0	0	0.13494	3	12007	12007;12018;12031		102.77	35.777	1	1154500			90247	6280	62769	62872	100476;100477;100478	100476					-0.008002123366622982
YIFEEPFTI	9	Unmodified	_YIFEEPFTI_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.7916870117188	2	579.789515	1157.56448	-0.39672	-0.00023002	0.29859	0.00017312	-0.098136	-5.6898E-05	579.7896771403458	94.369	1.5946	94.375	93.89	95.485	0.0059814					112	37	4	0	0	0	0.028181	4	11978	11978;11989;12000;12014		143.02	45.831	1	1242600			90248	6280	62769	62872	100479;100480;100481;100482	100479					-0.008002123366622982
YIFEEPFTI	9	Unmodified	_YIFEEPFTI_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.2908935546875	2	579.789515	1157.56448	-0.64031	-0.00037124	0.72603	0.00042095	0.085727	4.9704E-05	579.7898168394566	94.599	1.1456	94.462	93.921	95.067	-0.13779					63	26	4	0	0	0	0.6504	1	11681	11681		49.442	14.29	1	363260			90249	6280	62769	62872	100483	100483					-0.008002123366622982
YIFEEPFTI	9	Unmodified	_YIFEEPFTI_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.7901000976562	2	579.789515	1157.56448	-0.23739	-0.00013764	0.1956	0.00011341	-0.041791	-2.423E-05	579.7896311466005	94.611	0.92615	94.489	93.929	94.856	-0.12215					43	21	3	0	0	0	0.40179	1	11683	11683		65.803	9.0821	1	381150			90250	6280	62769	62872	100484	100484					-0.008002123366622982
YIFFIVIM	8	Unmodified	_YIFFIVIM_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.3259887695312	2	523.293182	1044.57181	-1.0691	-0.00055945	-0.19601	-0.00010257	-1.2651	-0.00066203	523.293084256613	81.134	0.60646	81.134	80.899	81.506	0					29	14	3	0	0	0	0.027866	1	10080	10080		33.493	6.6969	1	402170			90251	16048	62770	62873	100485	100485					0.05130848730050275
YIFFIVIM	8	Unmodified	_YIFFIVIM_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	523.293182	1044.57181	-1.0198	-0.00053365	-0.19935	-0.00010432	-1.2191	-0.00063797	523.2929726152954	81.229	0.68475	81.098	80.859	81.543	-0.13075	0.013311	-7.5626E-06	NaN	33.493	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387410			90252	16048	62770	62873							0.05130848730050275
YIFFIVIM	8	Unmodified	_YIFFIVIM_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	523.293182	1044.57181	-0.89734	-0.00046957	-0.18535	-9.6992E-05	-1.0827	-0.00056656	523.2929699418514	80.999	0.59375	81.023	80.735	81.329	0.023903	-0.062302	7.0943E-06	NaN	33.493	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426750			90253	16048	62770	62873							0.05130848730050275
YIFLFMLF	8	Unmodified	_YIFLFMLF_					0	0	0			REV__ENSG00000172154|ENST00000302124|OR8I2	REV__ENSG00000172154|ENST00000302124|OR8I2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	547.7838745117188	2	547.293182	1092.57181	-0.33484	-0.00018326	-0.081735	-4.4733E-05	-0.41658	-0.00022799	547.2924345346939	83.275	1.1485	83.136	82.696	83.844	-0.1386					54	26	4	0	0	0	0.027866	1	10119	10119		24.504	0	1	373940	+		90254	26638	62771	62874	100486	100486					0.029228487300542838
YIFPPRAN	8	Unmodified	_YIFPPRAN_					0	0	0		SLC6A2|p.W553R|1|0.23|ENSG00000103546|chr16:55700205-55700205|T/A|missense_variant	SLC6A2|p.W553R|1|0.23|ENSG00000103546|chr16:55700205-55700205|T/A|missense_variant	SLC6A2|p.W553R|1|0.23|ENSG00000103546|chr16:55700205-55700205|T/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	489.2657775878906	2	489.263802	976.513051	0.10189	4.9851E-05	2.3425	0.0011461	2.4444	0.001196	489.2651697655786	55.931	2.7826	55.715	54.942	57.724	-0.21607					194	75	5	0	0	0	0.78609	1	6100	6100		60.294	2.4827	1	81379000			90255	37895	62772	62875	100487	100487					0.023855084799379256
YIFRHHLLVTV	11	Unmodified	_YIFRHHLLVTV_					0	0	0			REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF	REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	466.6086120605469	3	466.60659	1396.79794	-0.089899	-4.1947E-05	3.2188	0.0015019	3.1289	0.00146	466.6080804541521	100.51	2.3323	100.33	99.316	101.65	-0.17088					127	63	3	0	0	0	1.0621	1	12539	12539		21.78	1.4654	1	684720	+		90256	33167	62773	62876	100488	100488					0.11541308893492896
YIFTIFACW	9	Unmodified	_YIFTIFACW_					0	0	0			REV__ENST00000472270.1_1_X:70756118-70756274:+|nuORF	REV__ENST00000472270.1_1_X:70756118-70756274:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	581.8449096679688	2	582.283346	1162.55214	-0.47608	-0.00027722	2.1022	0.0012241	1.6261	0.00094686	582.2843789202976	68.874	0.81867	68.643	68.439	69.258	-0.23048					37	19	3	0	0	0	0.024293	1	7939	7939		62.978	37.528	1	547310	+		90257	33203	62774	62877	100489	100489					-0.022635272806837747
YIFTIFACW	9	Unmodified	_YIFTIFACW_					0	0	0			REV__ENST00000472270.1_1_X:70756118-70756274:+|nuORF	REV__ENST00000472270.1_1_X:70756118-70756274:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	582.283346	1162.55214	0.022612	1.3166E-05	-1.9175	-0.0011165	-1.8949	-0.0011034	582.2820790887374	69.001	0.37592	69.016	68.795	69.171	0.015121	0.26425	-0.0041995	NaN	33.516	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84184	+		90258	33203	62774	62877							-0.022635272806837747
YIFVTIGSSII	11	Unmodified	_YIFVTIGSSII_					0	0	0			REV__ENSG00000255804|ENST00000540461|OR6J1	REV__ENSG00000255804|ENST00000540461|OR6J1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.88775634765625	3	404.900668	1211.68018	0.58688	0.00023763	-0.89917	-0.00036408	-0.31229	-0.00012645	404.90034904066204	17.795	0.14996	17.589	17.464	17.614	-0.20669					4	2	2	0	0	0	0.024759	1	219	219		17.833	2.5	1	21455	+		90259	29073	62775	62878	100490	100490					0.08280311514204186
YIGDHIFGD	9	Unmodified	_YIGDHIFGD_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2;ENST00000497526.1_1_2:113482708-113488660:+|nuORF;nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	517.7467041015625	2	518.740357	1035.46616	-0.4117	-0.00021357	2.6985	0.0013998	2.2868	0.0011863	519.244357388754	47.584	0.31802	47.487	47.35	47.668	-0.09713					12	8	2	0	0	0	0.024487	1	4692	4692		24.203	2.2429	1	73402			90260	1589	62776	62879	100491	100491					-0.05015395861846628
YIGILHDAF	9	Unmodified	_YIGILHDAF_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2360229492188	2	524.776742	1047.53893	0.34937	0.00018334	-4.0338	-0.0021169	-3.6845	-0.0019335	524.774170426937	25.387	0.2886	25.215	25.076	25.365	-0.17151					9	6	2	0	0	0	0.024535	1	1175	1175		18.324	0	1	64597			90261	1440	62777	62880	100492	100492					0.01706357931561797
YIGKSPKKI	9	Unmodified	_YIGKSPKKI_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2508544921875	2	517.32386	1032.63317	-0.20626	-0.0001067	-0.31556	-0.00016325	-0.52182	-0.00026995	517.3235587016821	47.047	0.8052	46.853	46.577	47.382	-0.19387					52	21	4	0	0	0	0.024506	1	4533	4533		38.806	1.647	1	2569400			90262	8620	62778	62881	100493	100493					0.11815496753706611
YIGLAAGLEP	10	Unmodified	_YIGLAAGLEP_					0	0	0			REV__ENSG00000159387|ENST00000290552|IRX6	REV__ENSG00000159387|ENST00000290552|IRX6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	501.6337890625	2	502.276575	1002.5386	-0.20848	-0.00010472	1.1192	0.00056212	0.91067	0.00045741	502.77875110515936	101.82	0.53001	101.82	101.6	102.13	0					20	11	2	0	0	0	0.03519	1	13077	13077		23.042	0	1	36729	+		90263	25251	62779	62882	100494	100494					0.0374293821170113
YIGLGSRLHC	10	Unmodified	_YIGLGSRLHC_					0	0	0		ENSG00000129968|ENST00000292577|ABHD17A;nc|ENSG00000129968|Q96GS6-2|ABHD17A;ENST00000458502.2_1_17:20744565-20744838:+|nuORF;nc|ENSG00000129968|Q96GS6-4|ABHD17A;ENST00000588598.5_1_19:1879918-1881565:-|nuORF;nc|ENSG00000129968|Q96GS6-3|ABHD17A	ENSG00000129968|ENST00000292577|ABHD17A	ENSG00000129968|ENST00000292577|ABHD17A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	559.7948608398438	2	559.792401	1117.57025	3.4046	0.0019059	2.9751	0.0016654	6.3797	0.0035713	559.7939020724322	16.65	0.47093	16.65	16.436	16.907	0					35	15	4	0	0	0	1.1329	1	78	78		27.882	4.8398	1	216640			90264	4375	62780	62883	100495	100495					0.016166076940407947
YIGNILSCCC	10	Unmodified	_YIGNILSCCC_					0	0	0		nc|ENSG00000166265|Q96J86-6|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.3243408203125	2	544.732306	1087.45006	-0.46947	-0.00025573	-2.7188	-0.001481	-3.1883	-0.0017368	544.730603594008	68.836	0.72537	68.543	68.171	68.897	-0.29267					39	18	3	0	0	0	0.03519	1	8183	8183		34.173	3.8548	1	596630			90265	18473	62781	62884	100496	100496					-0.09016884686275262
YIHILLSNL	9	Unmodified	_YIHILLSNL_					0	0	0		ENSG00000171944|ENST00000307388|OR52A5	ENSG00000171944|ENST00000307388|OR52A5	ENSG00000171944|ENST00000307388|OR52A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.27685546875	2	543.321317	1084.62808	-0.91807	-0.00049881	2.8854	0.0015677	1.9673	0.0010689	543.3223528245992	73.467	1.1411	73.277	72.42	73.561	-0.19026					51	27	3	0	0	0	0.024405	1	8554	8554		27.882	0	1	382560			90266	8222	62782	62885	100497	100497					0.08915192891095103
YIHWNHPV	8	Unmodified	_YIHWNHPV_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.7901000976562	2	533.266876	1064.5192	-1.5403	-0.00082138	2.3388	0.0012472	0.79854	0.00042583	533.2676877532675	64.963	0.66386	64.963	64.46	65.124	0					29	17	2	0	0	0	0.027866	1	7605	7605		40.573	13.88	1	187070			90267	8280	62783	62886	100498	100498					-0.010479732885414705
YIHWNHPV	8	Unmodified	_YIHWNHPV_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	533.266876	1064.5192	-1.6157	-0.00086159	3.0614	0.0016325	1.4457	0.00077093	533.2676971869439	65.235	0.70639	64.962	64.522	65.229	-0.27282	-0.0073971	0.00069187	NaN	60.294	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158750			90268	8280	62783	62886							-0.010479732885414705
YIIEEVTIY	9	Unmodified	_YIIEEVTIY_					0	0	0			REV__ENST00000527503.1_1_11:92881705-92887463:-|nuORF	REV__ENST00000527503.1_1_11:92881705-92887463:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.8031005859375	2	571.802623	1141.59069	1.1019	0.00063005	-0.91815	-0.000525	0.18372	0.00010505	571.8018161509672	97.408	0.75896	97.285	96.929	97.688	-0.12368					40	16	3	0	0	0	0.55828	1	12055	12055		55.504	2.1528	1	223040	+		90269	27362	62784	62887	100499	100499					0.025560568348055313
YIIFLRIT	8	Unmodified	_YIIFLRIT_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	520.2763671875	2	519.820953	1037.62735	-0.47558	-0.00024722	-1.0288	-0.00053478	-1.5044	-0.000782	519.8203912807528	91.475	0.59784	91.463	91.28	91.878	-0.012375					22	13	2	0	0	0	0.027866	1	11598	11598		20.482	2.1574	1	63373			90270	7568	62785	62888	100500	100500					0.11004398242016578
YIIFLRIT	8	Unmodified	_YIIFLRIT_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	519.820953	1037.62735	0.069797	3.6282E-05	-1.4664	-0.00076226	-1.3966	-0.00072598	519.8199812423136	91.423	0.63533	91.434	91.155	91.79	0.011276	-0.014534	-0.00021147	NaN	30.504	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67949			90271	7568	62785	62888							0.11004398242016578
YIIIDDSIME	10	Unmodified	_YIIIDDSIME_					0	0	0			REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	404.5706787109375	3	404.533657	1210.57914	0.053327	2.1572E-05	-1.4762	-0.00059718	-1.4229	-0.0005756	404.5328244380476	30.242	1.9467	30.251	29.515	31.462	0.0086689					101	46	3	0	0	0	0.03519	1	1906	1906		33.922	16.755	1	153250	+		90272	34966	62786	62889	100501	100501					-0.017725082508604828
YIIILLGNL	9	Unmodified	_YIIILLGNL_					0	0	0		ENSG00000174982|ENST00000641692|OR4S2;OR4S2|p.G202Vfs*6|1|0.21|ENSG00000174982|chr11:55651507-55651525|GGTACCATTGCTCTGGGGA/-|frameshift_variant	ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.2393188476562	2	516.328611	1030.64267	0.32626	0.00016846	-0.57174	-0.00029521	-0.24548	-0.00012675	516.3283010878131	78.59	0.60073	78.358	78.006	78.607	-0.23141					25	13	3	0	0	0	0.024541	1	9403	9403		24.203	0	1	90207			90273	8517	62787	62890	100502	100502					0.1285726503922433
YIINNSPCV	9	Carbamidomethyl (C)	_YIINNSPC(Carbamidomethyl (C))V_	YIINNSPC(1)V		YIINNSPC(79)V		0	1	0			REV__nc|ENSG00000166321|Q86X67-4|NUDT13	REV__nc|ENSG00000166321|Q86X67-4|NUDT13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	540.2610473632812	2	540.263142	1078.51173	-1.1365	-0.00061402	-1.9098	-0.0010318	-3.0463	-0.0016458	540.2619719728336	61.787	0.94176	61.609	61.287	62.229	-0.17782					67	23	4	0	0	0	0.27161	1	6956	6956		79.451	10.664	1	4373700	+		90274	25999	62788	62891	100503	100503	344				-0.024384936711157934
YIINSGGSTI	10	Unmodified	_YIINSGGSTI_					0	0	0			REV__ENST00000568029.5_1_15:42462052-42470793:-|nuORF	REV__ENST00000568029.5_1_15:42462052-42470793:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	512.7687377929688	2	512.769114	1023.52368	-0.11501	-5.8973E-05	-0.53441	-0.00027403	-0.64942	-0.000333	512.7686752330351	55.882	1.6876	55.882	55.216	56.904	0					100	46	3	0	0	0	0.69662	1	6185	6185		67.494	1.0644	1	1668000	+		90275	26073	62789	62892	100504	100504					0.012854463437406594
YIINSLPNR	9	Unmodified	_YIINSLPNR_					0	0	0		ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	ENSG00000099942|ENST00000354336|CRKL	MSMS	OPSCC_39_ClassI_Rep-3	3	545.3060913085938	2	545.306198	1088.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.208	1	18.272	17.772	18.772	0.063307								0	0	0	0.69683	1	224	224		20.947	3.582	1				90276	2100	62790	62893	100505	100505					0.057088342259021374
YIIPVVLF	8	Unmodified	_YIIPVVLF_					0	0	0		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	482.2646484375	2	482.299322	962.584091	-1.0702	-0.00051615	1.2842	0.00061938	0.21402	0.00010322	482.2995283640047	37.818	0.13386	37.818	37.702	37.836	0					5	3	2	0	0	0	0.027866	1	3113	3113		33.493	8.989	1	48332			90277	6887	62791	62894	100506	100506					0.10130208464750012
YIIVPQDGI	9	Unmodified	_YIIVPQDGI_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.V1497Cfs*3|1|0.4|ENSG00000197969|chr9:77315327-77315328|-/T|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.28399658203125	2	509.2844	1016.55425	-0.13883	-7.0704E-05	0.062986	3.2078E-05	-0.075845	-3.8627E-05	509.2843057709085	69.987	0.98575	69.736	69.196	70.182	-0.25063					73	23	5	0	0	0	0.55828	1	8153	8153		55.504	0	1	2425200			90278	10074	62792	62895	100507	100507					0.04663224728756177
YIIVTDAATL	10	Unmodified	_YIIVTDAATL_					0	0	0			REV__TBC1D12-HELLS|1|fusion	REV__TBC1D12-HELLS|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.8164672851562	2	540.30279	1078.59103	-0.69151	-0.00037362	-2.0737	-0.0011204	-2.7652	-0.001494	540.3013930359934	36.746	0.61808	36.683	36.396	37.014	-0.063385					42	15	4	0	0	0	0.03519	1	2975	2975		79.451	26.1	1	958370	+		90279	37677	62793	62896	100508	100508					0.05487476554640125
YIKAEELYI	9	Unmodified	_YIKAEELYI_					0	0	0		ENSG00000183690|ENST00000420999|EFHC2	ENSG00000183690|ENST00000420999|EFHC2	ENSG00000183690|ENST00000420999|EFHC2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.3104248046875	2	571.310615	1140.60668	0.24286	0.00013875	-0.74292	-0.00042444	-0.50005	-0.00028569	571.3101497180902	74.813	1.8282	74.537	74.132	75.96	-0.27573					144	44	5	0	0	0	0.20967	1	8827	8827		87.754	10.98	1	37698000			90280	9261	62794	62897	100509	100509					0.04199763071733287
YIKKLMTK	8	Unmodified	_YIKKLMTK_					0	0	0		ENSG00000127948|ENST00000461988|POR;ENST00000447222.5_1_7:75615553-75615796:+|nuORF;ENST00000394893.5_1_7:75615553-75615796:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7693481445312	2	512.814813	1023.61507	-1.1079	-0.00056816	2.7959	0.0014338	1.688	0.00086562	512.8161112758239	39.033	0.52614	38.868	38.59	39.116	-0.16458					27	14	2	0	0	0	0.027866	1	3229	3229		30.504	14.862	1	731620			90281	4269	62795	62898	100510	100510					0.10421038507354297
YIKRGDQT	8	Unmodified	_YIKRGDQT_					0	0	0			REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	489.7900085449219	2	490.761623	979.508694	0.68377	0.00033557	-0.58904	-0.00028908	0.094726	4.6488E-05	490.76110054177195	22.6	0.64978	22.398	22.097	22.747	-0.20199					18	13	2	0	0	0	0.027866	1	792	792		38.806	4.6336	1	122470	+		90282	21237	62796	62899	100511	100511					0.018119992663855555
YIKSYIWIK	9	Unmodified	_YIKSYIWIK_					0	0	0			REV__ENST00000380860.8_1_5:68400362-68400539:+|nuORF	REV__ENST00000380860.8_1_5:68400362-68400539:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	405.2388000488281	3	405.237504	1212.69068	0.13612	5.516E-05	2.6187	0.0010612	2.7548	0.0011163	405.23864125404083	27.134	1.1706	27.121	26.786	27.957	-0.012983					102	30	5	0	0	0	0.67244	1	1424	1424		47.96	1.5027	1	15084000	+		90283	31501	62797	62900	100512	100512					0.0928433895926446
YIKTSTTV	8	Unmodified	_YIKTSTTV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MSMS	OPSCC_40_ClassI_Rep-1	4	456.7557373046875	2	456.755475	911.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.574	1	32.338	31.838	32.838	-0.23666								0	0	0	0.5562	1	2256	2256		51.335	19.381	1				90284	5632;7555	62798	62901	100513	100513					0.03710962803336315
YIKTSTTV	8	Unmodified	_YIKTSTTV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MSMS	OPSCC_40_ClassI_Rep-1	4	456.7552185058594	2	456.755475	911.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.661	1	32.424	31.924	32.924	-0.23666								0	0	0	0.5562	1	2269	2269		51.335	7.2187	1				90285	5632;7555	62798	62901	100514	100514					0.03710962803336315
YIKTSTTV	8	Unmodified	_YIKTSTTV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MSMS	OPSCC_40_ClassI_Rep-2	5	456.7555236816406	2	456.755475	911.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.542	1	32.349	31.849	32.849	-0.19261								0	0	0	0.60928	1	2245	2245		47.657	15.702	1				90286	5632;7555	62798	62901	100515	100515					0.03710962803336315
YIKTSTTV	8	Unmodified	_YIKTSTTV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MSMS	OPSCC_40_ClassI_Rep-2	5	456.75531005859375	2	456.755475	911.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.617	1	32.424	31.924	32.924	-0.19261								0	0	0	0.5562	1	2256	2256		51.335	14.176	1				90287	5632;7555	62798	62901	100516	100516					0.03710962803336315
YIKTSTTV	8	Unmodified	_YIKTSTTV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MSMS	OPSCC_40_ClassI_Rep-2	5	456.75396728515625	2	456.755475	911.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.701	1	32.508	32.008	33.008	-0.19261								0	0	0	0.46303	1	2269	2269		58.782	14.665	1				90288	5632;7555	62798	62901	100517	100517					0.03710962803336315
YIKTSTTV	8	Unmodified	_YIKTSTTV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	456.75579833984375	2	456.755475	911.496398	-0.19541	-8.9256E-05	0.019209	8.7738E-06	-0.17621	-8.0483E-05	456.7554276122564	32.541	0.92732	32.383	32.079	33.006	-0.15772					50	22	4	0	0	0	0.5947	2	2227	2227;2237		76.774	30.822	1	2785200			90289	5632;7555	62798	62901	100518;100519	100518					0.03710962803336315
YIKYSKVF	8	Unmodified	_YIKYSKVF_					0	0	0		ENSG00000188629|ENST00000683217|ZNF177	ENSG00000188629|ENST00000683217|ZNF177	ENSG00000188629|ENST00000683217|ZNF177	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	524.2702026367188	2	524.29731	1046.58007	-0.43053	-0.00022573	4.3236	0.0022668	3.893	0.0020411	524.2995079021316	35.23	0.22933	35.018	34.886	35.115	-0.21246					9	5	2	0	0	0	0.027866	1	2649	2649		17.365	6.4994	1	59831			90290	9733	62799	62902	100520	100520					0.05864118971044263
YILDLQVVL	9	Unmodified	_YILDLQVVL_					0	0	0		ENSG00000117318|ENST00000374561|ID3;ID3|p.A85Pfs*41|1|0.36|ENSG00000117318|chr1:23559174-23559174|C/-|frameshift_variant	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MSMS	OPSCC_40_ClassI_Rep-2	5	538.3250122070312	2	538.323525	1074.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.85	1	100.73	100.23	101.23	-0.12576								0	0	0	0.60292	1	12524	12524		39.253	8.7492	1				90291	3621	62800	62903	100521	100521					0.09816657314013355
YILEWCVL	8	Unmodified	_YILEWCVL_					0	0	0		ENST00000503773.6_1_5:55236912-55256289:-|nuORF;ENSG00000134352|ENST00000381298|IL6ST;IL6ST|p.V530*|1|0.26|ENSG00000134352|chr5:55952041-55952041|T/-|frameshift_variant	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	ENST00000503773.6_1_5:55236912-55256289:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	520.3052368164062	2	519.770071	1037.52559	-0.41907	-0.00021782	2.429	0.0012625	2.0099	0.0010447	519.7708206072872	94.168	1.492	94.168	93.73	95.222	0					80	35	4	0	0	0	0.027866	1	11920	11920		54.765	0	1	1019600			90292	4788	62801	62904	100522	100522					0.00832783827968342
YILGPFLEP	9	Unmodified	_YILGPFLEP_					0	0	0			REV__ENSG00000182521|ENST00000247219|TBPL2	REV__ENSG00000182521|ENST00000247219|TBPL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.266845703125	2	524.789318	1047.56408	0.40062	0.00021024	-4.0831	-0.0021428	-3.6824	-0.0019325	525.2887145682944	83.854	0.77546	83.716	83.547	84.322	-0.1386					30	17	3	0	0	0	0.024354	1	10094	10094		47.916	1.9636	1	72019	+		90293	27485	62802	62905	100523	100523					0.04220412734139245
YILILYRKSN	10	Unmodified	_YILILYRKSN_					0	0	0			REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61	REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	641.8825073242188	2	641.87953	1281.74451	0.76256	0.00048947	3.7282	0.0023931	4.4908	0.0028826	641.8817723425946	95.915	2.9198	95.792	94.855	97.775	-0.12305					257	66	6	0	0	0	1.118	1	11915	11915		30.318	3.6248	1	3421300	+		90294	21489	62803	62906	100524	100524					0.11490511390979918
YILLILITK	9	Unmodified	_YILLILITK_					0	0	0		ENST00000265404.6_1_4:68472071-68472191:+|nuORF	ENST00000265404.6_1_4:68472071-68472191:+|nuORF	ENST00000265404.6_1_4:68472071-68472191:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2867431640625	2	545.367736	1088.72092	0.511	0.00027868	-0.89054	-0.00048567	-0.37954	-0.00020699	545.3673285338763	84.343	0.38791	84.184	83.976	84.364	-0.15868					10	8	2	0	0	0	0.024539	1	10198	10198		20.947	0	1	37291			90295	11595	62804	62907	100525	100525					0.1801069762445877
YILLILLLN	9	Unmodified	_YILLILLLN_					0	0	0		ENST00000342992.10_3_2:179465685-179466102:-|nuORF	ENST00000342992.10_3_2:179465685-179466102:-|nuORF	ENST00000342992.10_3_2:179465685-179466102:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	544.3258056640625	2	544.359911	1086.70527	-0.25612	-0.00013942	1.6272	0.00088576	1.371	0.00074634	544.3584091337066	71.993	0.14307	72.003	71.915	72.058	0.0097733					5	3	2	0	0	0	0.024443	1	8667	8667		35.201	12.158	1	40777			90296	12520	62805	62908	100526	100526					0.16538411107444517
YILLVVHTL	9	Unmodified	_YILLVVHTL_					0	0	0			REV__ENSG00000167619|ENST00000301204|TMEM145	REV__ENSG00000167619|ENST00000301204|TMEM145	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	536.3060913085938	2	535.83406	1069.65357	-0.058963	-3.1594E-05	-3.0022	-0.0016087	-3.0612	-0.0016403	535.832266994375	78.623	1.0751	78.431	77.891	78.966	-0.1921					58	25	4	0	0	0	0.024541	1	9666	9666		12.959	0	1	1075800	+		90297	26167	62806	62909	100527	100527					0.12152667413533891
YILPNLMST	9	Unmodified	_YILPNLMST_					0	0	0			REV__ENSG00000258817|ENST00000555099|OR4C13	REV__ENSG00000258817|ENST00000555099|OR4C13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2855224609375	2	526.27826	1050.54197	-0.1059	-5.5732E-05	3.7331	0.0019647	3.6272	0.0019089	526.2804923575911	53.462	0.69075	53.265	52.897	53.588	-0.19739					46	18	4	0	0	0	0.024457	1	5539	5539		29.15	0	1	449150	+		90298	29100	62807	62910	100528	100528					0.018718649940637988
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8228759765625	2	519.820953	1037.62735	-0.90481	-0.00047034	-0.075205	-3.9093E-05	-0.98001	-0.00050943	519.821274373032	80.739	6.9474	80.739	80.331	87.278	0					374	165	5	0	0	0	0.47665	5	10222	10124;10222;10234;10290;10313		87.754	16.371	1	156200000			90299	14332	62808	62911	100529;100530;100531;100532;100533	100530					0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-3	3	519.822265625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.556	1	82.582	82.082	83.082	0.025711								0	0	0	0.3668	1	10231	10231		71.296	8.3173	1				90300	14332	62808	62911	100534	100534					0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	519.7896118164062	2	519.820953	1037.62735	-0.46669	-0.00024259	-0.064687	-3.3626E-05	-0.53137	-0.00027622	519.8206464458262	79.509	1.6197	79.528	78.609	80.229	0.018677					56	38	2	0	0	0	0.027866	1	9886	9886		40.573	0	1	187010			90301	14332	62808	62911	100535	100535					0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.8224487304688	2	519.820953	1037.62735	-0.13868	-7.2088E-05	-0.76989	-0.0004002	-0.90857	-0.00047229	519.8207943797133	80.709	2.8539	80.471	80.082	82.936	-0.23784					206	67	5	0	0	0	0.53523	2	9736	9736;9785		82.305	13.504	1	86800000			90302	14332	62808	62911	100536;100537	100536					0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.8230590820312	2	519.820953	1037.62735	0.51964	0.00027012	-1.5907	-0.0008269	-1.0711	-0.00055678	519.8203598355412	80.693	3.8803	80.487	80.092	83.972	-0.20633					227	91	5	0	0	0	0.59392	2	9796	9796;9808		76.847	4.2267	1	79062000			90303	14332	62808	62911	100538;100539	100538					0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	519.820953	1037.62735	-0.98098	-0.00050993	1.0863	0.00056469	0.10534	5.4757E-05	519.8210043794977	79.567	1.3346	79.395	78.611	79.945	-0.17226	0.052574	0.001382	NaN	40.573	53	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169740			90304	14332	62808	62911							0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	519.820953	1037.62735	0.44999	0.00023392	-0.91014	-0.00047311	-0.46015	-0.0002392	519.8203482785793	79.479	0.70329	79.26	78.873	79.577	-0.21923	-0.082832	-0.00069363	NaN	40.573	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75044			90305	14332	62808	62911							0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	519.820953	1037.62735	0.3044	0.00015823	-1.0457	-0.00054357	-0.74128	-0.00038533	519.8203688944641	79.338	0.58347	79.187	78.821	79.404	-0.15051	-0.15535	-0.00083455	NaN	40.573	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83998			90306	14332	62808	62911							0.11004398242016578
YILTRFAL	8	Unmodified	_YILTRFAL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	498.25579833984375	2	498.797478	995.580402	0.13503	6.7354E-05	-1.4065	-0.00070158	-1.2715	-0.00063423	498.7963884800278	71.604	0.39832	71.342	71.2	71.598	-0.26199					16	9	2	0	0	0	0.027866	1	8390	8390		50.025	9.4519	1	214270			90307	2570	62809	62912	100540	100540					0.08243538690885543
YILVQRSVT	9	Unmodified	_YILVQRSVT_					0	0	0			REV__ENSG00000108582|ENST00000225719|CPD	REV__ENSG00000108582|ENST00000225719|CPD	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.8164672851562	2	539.816399	1077.61824	-0.2494	-0.00013463	-0.016894	-9.1194E-06	-0.26629	-0.00014375	539.8162465475042	37.093	0.92006	37.03	36.669	37.589	-0.063389					62	24	4	0	0	0	0.23085	1	2975	2975		84.916	2.6105	1	3328500	+		90308	21748	62810	62913	100541	100541					0.0825400488570267
YILVVFLNVKT	11	Unmodified	_YILVVFLNVKT_					0	0	0		ENST00000349792.9_1_1:151221216-151221447:+|nuORF	ENST00000349792.9_1_1:151221216-151221447:+|nuORF	ENST00000349792.9_1_1:151221216-151221447:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	436.9339599609375	3	436.935713	1307.78531	0.042733	1.8672E-05	-3.8359	-0.001676	-3.7932	-0.0016574	436.9338403733163	20.466	3.1397	20.298	20.002	23.141	-0.16774					157	65	4	0	0	0	0.99689	1	544	544		37.508	4.4688	1	862240			90309	12591	62811	62914	100542	100542					0.14372852710584993
YILYTSGTT	9	Unmodified	_YILYTSGTT_					0	0	0		ENSG00000111058|ENST00000548058|ACSS3;ENST00000548387.1_1_12:81528603-81537122:+|nuORF	ENSG00000111058|ENST00000548058|ACSS3	ENSG00000111058|ENST00000548058|ACSS3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7734069824219	2	509.758215	1017.50188	-0.48398	-0.00024671	3.9318	0.0020043	3.4478	0.0017575	509.7600221714786	69.774	0.48923	69.786	69.463	69.952	0.012413					19	11	2	0	0	0	0.024487	1	8293	8293		40.573	0	1	171220			90310	3085	62812	62915	100543	100543					-0.006173584048383418
YILYTSGTT	9	Unmodified	_YILYTSGTT_					0	0	0		ENSG00000111058|ENST00000548058|ACSS3;ENST00000548387.1_1_12:81528603-81537122:+|nuORF	ENSG00000111058|ENST00000548058|ACSS3	ENSG00000111058|ENST00000548058|ACSS3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	509.758215	1017.50188	-0.12856	-6.5532E-05	3.1585	0.0016101	3.0299	0.0015445	509.7597192845059	69.719	0.49165	69.719	69.423	69.915	0	-0.019488	-0.00029259	NaN	30.504	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133410			90311	3085	62812	62915							-0.006173584048383418
YILYTSGTT	9	Unmodified	_YILYTSGTT_					0	0	0		ENSG00000111058|ENST00000548058|ACSS3;ENST00000548387.1_1_12:81528603-81537122:+|nuORF	ENSG00000111058|ENST00000548058|ACSS3	ENSG00000111058|ENST00000548058|ACSS3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	509.758215	1017.50188	0.59781	0.00030474	2.6169	0.001334	3.2147	0.0016387	509.75910668328896	70.004	0.53371	69.711	69.427	69.96	-0.29291	-0.027776	-0.00084472	NaN	30.504	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135120			90312	3085	62812	62915							-0.006173584048383418
YINPYIVSV	9	Unmodified	_YINPYIVSV_					0	0	0			REV__ENSG00000166959|ENST00000300226|MS4A8	REV__ENSG00000166959|ENST00000300226|MS4A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	534.7820434570312	2	534.292225	1066.5699	-1.4149	-0.00075596	-2.1566	-0.0011522	-3.5714	-0.0019082	534.2908972836834	41.02	0.48656	40.79	40.554	41.041	-0.23029					16	12	2	0	0	0	0.024477	1	3616	3616		35.618	3.6634	1	283530	+		90313	26089	62813	62916	100544	100544					0.039275112458199146
YINPYIVSV	9	Unmodified	_YINPYIVSV_					0	0	0			REV__ENSG00000166959|ENST00000300226|MS4A8	REV__ENSG00000166959|ENST00000300226|MS4A8	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.292225	1066.5699	-0.63669	-0.00034018	-2.6218	-0.0014008	-3.2585	-0.001741	534.2908194703283	40.97	0.3826	40.742	40.544	40.927	-0.2278	-0.023607	-0.00025733	NaN	35.618	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277930	+		90314	26089	62813	62916							0.039275112458199146
YINRSFAF	8	Unmodified	_YINRSFAF_					0	0	0		ENST00000477241.1_1_2:239037864-239040370:+|nuORF;nc|ENSG00000144488|Q6ZVH7-3|ESPNL;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;ENSG00000144488|ENST00000343063|ESPNL	ENST00000477241.1_1_2:239037864-239040370:+|nuORF	ENST00000477241.1_1_2:239037864-239040370:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7625732421875	2	509.261259	1016.50797	0.37242	0.00018966	-0.66184	-0.00033705	-0.28941	-0.00014739	509.26073494467016	17.216	0.34129	17.073	16.934	17.276	-0.14278					10	7	2	0	0	0	0.97924	1	129	129		40.573	2.7611	1	30820			90315	5745	62814	62917	100545	100545					0.00037204617331099143
YIPDEDIIDI	10	Unmodified	_YIPDEDIIDI_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR;REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	402.5364685058594	3	402.536055	1204.58634	0.51166	0.00020596	0.48533	0.00019536	0.99699	0.00040132	402.5362114269767	32.674	1.0761	32.437	31.954	33.03	-0.23666					44	25	3	0	0	0	0.98527	1	2263	2263		47.96	6.5329	1	3852400	+		90316	25804;34372	62815	62918	100546	100546					-0.007774523787702492
YIPDEDIIDI	10	Unmodified	_YIPDEDIIDI_					0	0	0			REV__nc|ENSG00000164808|Q14159-2|SPIDR;REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	REV__ENST00000524141.5_1_8:48173550-48625457:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	402.5362854003906	3	402.536055	1204.58634	0.62353	0.00025099	0.33401	0.00013445	0.95754	0.00038544	402.5360161738049	35.154	4.3138	34.941	33.044	37.357	-0.21246					228	111	6	0	0	0	1.0344	1	2658	2658		41.427	0	1	1567700	+		90317	25804;34372	62815	62918	100547	100547					-0.007774523787702492
YIPEEIYWGF	10	Unmodified	_YIPEEIYWGF_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	440.2108154296875	3	439.544773	1315.61249	-0.41361	-0.0001818	-2.1231	-0.00093319	-2.5367	-0.001115	439.5438735170382	26.867	0.55171	26.698	26.42	26.971	-0.16816					23	12	2	0	0	0	0.03519	1	1396	1396		35.152	25.506	1	73774			90318	6605	62816	62919	100548	100548					-0.03269138416635542
YIPEEIYWGF	10	Unmodified	_YIPEEIYWGF_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	439.544773	1315.61249	-0.73721	-0.00032404	-1.6483	-0.0007245	-2.3855	-0.0010485	439.54406249322017	26.984	0.92936	26.741	26.45	27.379	-0.24217	-0.0030084	0.00079667	NaN	28.081	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132510			90319	6605	62816	62919							-0.03269138416635542
YIPLVELVP	9	Unmodified	_YIPLVELVP_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.7661743164062	2	521.812793	1041.61103	-0.19542	-0.00010197	-3.1753	-0.0016569	-3.3707	-0.0017589	521.810913229557	78.672	0.51717	78.418	78.212	78.729	-0.25471					18	11	2	0	0	0	0.024466	1	9415	9415		42.474	23.114	1	136110			90320	7416	62817	62920	100549	100549					0.09189272285289007
YIPRLLFS	8	Unmodified	_YIPRLLFS_					0	0	0			REV__ENSG00000203857|ENST00000369413|HSD3B1	REV__ENSG00000203857|ENST00000369413|HSD3B1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	504.7713928222656	2	504.797478	1007.5804	-0.43423	-0.0002192	2.5294	0.0012769	2.0952	0.0010577	504.7987693888389	48.78	0.3824	48.78	48.516	48.899	0					17	10	2	0	0	0	0.027866	1	5015	5015		35.201	9.7505	1	327770	+		90321	28549	62818	62921	100550	100550					0.07691538690903599
YIPRLVRL	8	Unmodified	_YIPRLVRL_					0	0	0		ENST00000536936.1_1_20:6096561-6103456:-|nuORF	ENST00000536936.1_1_20:6096561-6103456:-|nuORF	ENST00000536936.1_1_20:6096561-6103456:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	515.7901000976562	2	515.332019	1028.64948	0.15707	8.0943E-05	3.9943	0.0020584	4.1514	0.0021394	515.3340545553301	52.373	0.42117	52.225	51.985	52.406	-0.14735					14	10	2	0	0	0	0.027866	1	5605	5605		44.531	29.867	1	97569			90322	16367	62819	62922	100551	100551					0.1363062271045692
YIPSLLIVI	9	Unmodified	_YIPSLLIVI_					0	0	0		nc|ENSG00000101958|P23416-3|GLRA2;nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000101958|P23416-2|GLRA2;ENSG00000101958|ENST00000218075|GLRA2;nc|ENSG00000145888|P23415|GLRA1;ENSG00000145451|ENST00000274093|GLRA3	nc|ENSG00000101958|P23416-3|GLRA2	nc|ENSG00000101958|P23416-3|GLRA2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.2972412109375	2	515.830986	1029.64742	-1.1927	-0.00061525	0.3681	0.00018988	-0.82464	-0.00042538	515.8312471563522	107.33	0.22849	107.2	107.08	107.31	-0.1346					12	9	2	0	0	0	0.024386	1	13320	13320		33.516	15.191	1	37022			90323	2365	62820	62923	100552	100552					0.13378149181994559
YIPSLLIVI	9	Unmodified	_YIPSLLIVI_					0	0	0		nc|ENSG00000101958|P23416-3|GLRA2;nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000101958|P23416-2|GLRA2;ENSG00000101958|ENST00000218075|GLRA2;nc|ENSG00000145888|P23415|GLRA1;ENSG00000145451|ENST00000274093|GLRA3	nc|ENSG00000101958|P23416-3|GLRA2	nc|ENSG00000101958|P23416-3|GLRA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	515.830986	1029.64742	0.058573	3.0214E-05	-0.35293	-0.00018205	-0.29435	-0.00015184	515.830919886742	107.43	0.17956	107.43	107.26	107.44	-0.003479	0.17371	-0.00026191	NaN	33.516	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127370			90324	2365	62820	62923							0.13378149181994559
YIPSLLIVI	9	Unmodified	_YIPSLLIVI_					0	0	0		nc|ENSG00000101958|P23416-3|GLRA2;nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000101958|P23416-2|GLRA2;ENSG00000101958|ENST00000218075|GLRA2;nc|ENSG00000145888|P23415|GLRA1;ENSG00000145451|ENST00000274093|GLRA3	nc|ENSG00000101958|P23416-3|GLRA2	nc|ENSG00000101958|P23416-3|GLRA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	515.830986	1029.64742	-0.1489	-7.6809E-05	-0.040507	-2.0895E-05	-0.18941	-9.7704E-05	515.8309949405832	107.25	0.28583	107.13	107.04	107.32	-0.12381	-0.1211	6.0396E-05	NaN	33.516	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35754			90325	2365	62820	62923							0.13378149181994559
YIQDHDTPA	9	Unmodified	_YIQDHDTPA_					0	0	0		ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	530.7430419921875	2	530.240721	1058.46689	0.56783	0.00030109	-0.012857	-6.8174E-06	0.55498	0.00029427	530.2406059221765	110.55	1.0768	110.4	109.91	110.98	-0.1469					89	41	3	0	0	0	1.0101	1	13555	13555		18.324	1.8513	1	70861			90326	3712	62821	62924	100553	100553					-0.06000601212804213
YIQKKKEL	8	Unmodified	_YIQKKKEL_					0	0	0		RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;RB1|p.G509Efs*10|1|0.5|ENSG00000139687|chr13:48381273-48381273|G/-|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF;RB1|p.L326Rfs*9|1|0.3|ENSG00000139687|chr13:48367529-48367545|TCTTAAAAATAAAGATC/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	RB1|p.N767Ifs*43|1|0.38|ENSG00000139687|chr13:48465084-48465084|A/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3214111328125	2	525.321317	1048.62808	1.1414	0.00059961	-1.3291	-0.00069822	-0.1877	-9.8603E-05	525.3204412806132	19.731	0.49404	19.498	19.275	19.769	-0.23345					22	9	3	0	0	0	0.77775	2	433	433;444		60.972	7.6205	1	291870			90327	5359	62822	62925	100554;100555	100554					0.1057119289109778
YIQKVKMIN	9	Unmodified	_YIQKVKMIN_					0	0	0		ENST00000321394.11_1_6:160200003-160200165:-|nuORF	ENST00000321394.11_1_6:160200003-160200165:-|nuORF	ENST00000321394.11_1_6:160200003-160200165:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2779541015625	2	568.828452	1135.64235	0.16752	9.5288E-05	-3.9088	-0.0022234	-3.7413	-0.0021281	569.3281093074347	79.681	0.20709	79.531	79.363	79.57	-0.15051					7	4	2	0	0	0	0.024523	1	9530	9530		29.15	8.2026	1	55303			90328	12207	62823	62926	100556	100556					0.07995522047758641
YIQNCILIE	9	Unmodified	_YIQNCILIE_					0	0	0		ENST00000352251.7_2_13:39584776-39584926:-|nuORF	ENST00000352251.7_2_13:39584776-39584926:-|nuORF	ENST00000352251.7_2_13:39584776-39584926:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.2273559570312	2	554.788992	1107.56343	0.26759	0.00014845	-2.5042	-0.0013893	-2.2366	-0.0012408	554.7872715025728	80.655	1.1086	80.448	80.132	81.241	-0.20633					72	26	4	0	0	0	0.024263	1	9648	9648		51.335	8.4712	1	1705600			90329	12602	62824	62927	100557	100557					0.013952500227787823
YIQNFRFF	8	Unmodified	_YIQNFRFF_					0	0	0		nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	nc|ENSG00000204084|P32019-3|INPP5B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	567.811279296875	2	567.790184	1133.56581	-0.77322	-0.00043903	-0.47974	-0.00027239	-1.253	-0.00071142	567.7886113450428	70.984	0.15363	70.994	70.896	71.05	0.010735					5	3	2	0	0	0	0.027866	1	8516	8516		26.796	0	1	48390			90330	10297	62825	62928	100558	100558					0.004374665427576474
YIRFKHLFWWW	11	Unmodified	_YIRFKHLFWWW_					0	0	0			REV__nc|ENSG00000166262|Q96M60-2|FAM227B	REV__nc|ENSG00000166262|Q96M60-2|FAM227B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	421.5205078125	4	421.22522	1680.87177	-0.12685	-5.3431E-05	0.16338	6.8822E-05	0.036539	1.5391E-05	421.2264035656941	31.857	0.49246	31.699	31.412	31.904	-0.15772					18	11	2	0	0	0	0.024896	1	2125	2125		6.3209	3.1096	1	243470	+		90331	36885	62826	62929	100559	100559					0.05857277055815757
YIRIVLNPND	10	Unmodified	_YIRIVLNPND_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	608.8357543945312	2	608.837862	1215.66117	-1.5508	-0.00094421	-0.27679	-0.00016852	-1.8276	-0.0011127	608.8375823790956	109.85	0.61025	109.72	109.5	110.11	-0.13983					81	26	5	0	0	0	1.1088	1	13494	13494		31.53	5.9558	1	5424900	+		90332	21244	62827	62930	100560	100560					0.06196774943123273
YIRKKEIPF	9	Unmodified	_YIRKKEIPF_					0	0	0		nc|ENSG00000064270|O75185-3|ATP2C2;ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;ATP2C2|p.N731Tfs*7|1|0.08|ENSG00000064270|chr16:84459160-84459160|A/-|frameshift_variant	nc|ENSG00000064270|O75185-3|ATP2C2	nc|ENSG00000064270|O75185-3|ATP2C2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.3534545898438	2	597.355691	1192.69683	-0.47193	-0.00028191	-1.6987	-0.0010148	-2.1707	-0.0012967	597.3537728093169	103.83	1.2432	103.82	103.23	104.47	-0.0032196					82	29	5	0	0	0	0.92825	1	13236	13236		30.504	1.3541	1	650120			90333	18062	62828	62931	100561	100561					0.10818857190793096
YIRNHHVA	8	Unmodified	_YIRNHHVA_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.26953125	2	505.26995	1008.52535	2.2185	0.0011209	-2.0535	-0.0010376	0.16494	8.3341E-05	505.26874979600456	18.89	0.4452	18.648	18.424	18.869	-0.24256					21	8	3	0	0	0	1.0133	1	327	327		35.201	1.6851	1	191380			90334	3189	62829	62932	100562	100562					0.021425449429898435
YIRPLHCLL	9	Unmodified	_YIRPLHCLL_					0	0	0			REV__ENSG00000136271|ENST00000258772|DDX56	REV__ENSG00000136271|ENST00000258772|DDX56	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.2852783203125	2	564.323337	1126.63212	-0.33617	-0.00018971	-3.4241	-0.0019323	-3.7602	-0.002122	564.3214455458655	67.179	0.78059	66.955	66.742	67.523	-0.22374					33	18	3	0	0	0	0.024541	1	7765	7765		13.775	0	1	589350	+		90335	23643	62830	62933	100563	100563					0.07386959113136982
YIRRHVLN	8	Unmodified	_YIRRHVLN_					0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.287353515625	2	535.814525	1069.6145	-0.08886	-4.7613E-05	1.6308	0.00087379	1.5419	0.00082618	535.8154047994943	80.756	0.61227	80.55	80.257	80.869	-0.20633					22	14	2	0	0	0	0.027866	1	9721	9721		33.516	16.151	1	118710	+		90336	24412	62831	62934	100564	100564					0.08247379902513785
YISFQILFHYF	11	Unmodified	_YISFQILFHYF_					0	0	0		ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	493.26983642578125	3	493.255334	1476.74417	-0.12437	-6.1346E-05	-0.98764	-0.00048716	-1.112	-0.0005485	493.25471494714566	25.46	0.62684	25.29	24.955	25.581	-0.17078					20	14	2	0	0	0	0.024865	1	1200	1200		6.6596	0	1	67377			90337	15149	62832	62935	100565	100565					0.02487091671127928
YISILNQKI	9	Unmodified	_YISILNQKI_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	546.3056030273438	2	546.326599	1090.63865	-1.0305	-0.00056297	0.21946	0.0001199	-0.811	-0.00044307	546.3265928771457	80.767	1.3406	80.767	80.289	81.63	0					64	32	2	0	0	0	0.024209	1	10072	10072		76.774	12.567	1	567250			90338	2544	62833	62936	100566	100566					0.09695175545516577
YISLPCPIY	9	Unmodified	_YISLPCPIY_					0	0	0			REV__ENST00000263354.7_1_19:47991268-47991526:-|nuORF	REV__ENST00000263354.7_1_19:47991268-47991526:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.776123046875	2	534.775354	1067.53615	-0.20556	-0.00010993	3.2408	0.0017331	3.0353	0.0016232	534.7769936104708	63.18	0.87325	62.959	62.609	63.482	-0.22097					36	21	2	0	0	0	0.36105	1	7136	7136		68.485	11.764	1	5481100	+		90339	29686	62834	62937	100567	100567					0.00508766482403189
YISLVMDVQ	9	Unmodified	_YISLVMDVQ_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.2733154296875	2	534.275718	1066.53688	-0.75535	-0.00040357	-2.6922	-0.0014384	-3.4475	-0.0018419	534.274267269369	77.29	1.0828	77.128	76.825	77.908	-0.16196					48	25	3	0	0	0	0.6504	1	9181	9181		49.442	1.7842	1	1038300			90340	11026	62835	62938	100568	100568					0.006275611314549678
YISRDVKLT	9	Unmodified	_YISRDVKLT_					0	0	0		ENST00000488608.5_1_X:64139959-64196305:-|nuORF;ENST00000492653.5_1_X:64139109-64196305:-|nuORF	ENST00000488608.5_1_X:64139959-64196305:-|nuORF	ENST00000488608.5_1_X:64139959-64196305:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.2916870117188	2	547.813856	1093.61316	-0.095589	-5.2365E-05	3.1289	0.0017141	3.0334	0.0016617	547.8156575169692	72.567	1.0449	72.577	72.21	73.255	0.0097733					57	25	4	0	0	0	0.024319	1	8750	8750		56.721	0	1	1597100			90341	15392	62836	62939	100569	100569					0.07009701023071102
YISSLADAGP	10	Unmodified	_YISSLADAGP_					0	0	0			REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	REV__DNAH9|p.L4276Tfs*8|1|0.07|ENSG00000007174|chr17:11942466-11942467|-/AACACAGC|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	497.75872802734375	2	497.248015	992.481476	0.48781	0.00024256	2.841	0.0014127	3.3288	0.0016552	497.2494329896736	59.61	2.402	59.41	58.671	61.073	-0.20016					148	64	5	0	0	0	0.03519	1	6954	6954		25.574	7.2496	1	1648000	+		90342	19690	62837	62940	100570	100570					-0.015065290646589347
YISVKKIEEL	10	Unmodified	_YISVKKIEEL_					0	0	0		ENST00000261396.5_1_1:229584927-229588291:-|nuORF	ENST00000261396.5_1_1:229584927-229588291:-|nuORF	ENST00000261396.5_1_1:229584927-229588291:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3510131835938	2	611.358096	1220.70164	-0.5279	-0.00032273	-2.8308	-0.0017306	-3.3587	-0.0020534	611.3562554984684	92.326	2.2035	92.318	91.16	93.364	-0.0082932					149	52	4	0	0	0	1.0236	1	11653	11653		42.864	2.0861	1	3964400			90343	11470	62838	62941	100571	100571					0.1001169654291516
YISVKKIEEL	10	Unmodified	_YISVKKIEEL_					0	0	0		ENST00000261396.5_1_1:229584927-229588291:-|nuORF	ENST00000261396.5_1_1:229584927-229588291:-|nuORF	ENST00000261396.5_1_1:229584927-229588291:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3557739257812	2	611.358096	1220.70164	-0.45812	-0.00028007	-2.6812	-0.0016391	-3.1393	-0.0019192	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.118	1	11574	11574		30.318	0	1	13365000			90344	11470	62838	62941	100572	100572					0.1001169654291516
YISVRISK	8	Unmodified	_YISVRISK_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	484.2528381347656	2	483.292559	964.570566	-1.0164	-0.00049122	-2.9847	-0.0014425	-4.0011	-0.0019337	483.2928829627427	51.815	1.0821	51.902	51.478	52.56	0.087009					65	28	3	0	0	0	0.027866	1	5496	5496		51.335	2.1247	1	772950			90345	6047	62839	62942	100573	100573					0.08686350685525213
YITAELKAL	9	Unmodified	_YITAELKAL_					0	0	0		ENSG00000205126|ENST00000378832|ACCSL;ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENSG00000205126|ENST00000378832|ACCSL	ENSG00000205126|ENST00000378832|ACCSL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.7834167480469	2	511.30005	1020.58555	-0.32171	-0.00016449	-0.1254	-6.4115E-05	-0.44711	-0.00022861	511.29972833347495	53.461	0.6059	53.461	53.049	53.655	0					35	16	3	0	0	0	0.024539	1	5747	5747		35.618	7.736	1	686430			90346	10406	62840	62943	100574	100574					0.07607797762852897
YITDPLDPSIK	11	Unmodified	_YITDPLDPSIK_					0	0	0			REV__ENSG00000170775|ENST00000303921|GPR37	REV__ENSG00000170775|ENST00000303921|GPR37	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	421.520751953125	3	421.227333	1260.66017	0.074151	3.1235E-05	-2.776	-0.0011693	-2.7019	-0.0011381	421.2260856127502	31.882	0.48838	31.646	31.336	31.824	-0.23666					20	11	2	0	0	0	0.024765	1	2144	2144		26.75	3.9683	1	175690	+		90347	26502	62841	62944	100575	100575					0.0402651578356199
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.3195190429688	2	539.318774	1076.623	-0.39227	-0.00021156	0.21707	0.00011707	-0.1752	-9.4487E-05	539.3186574201227	61.457	0.70194	61.243	60.96	61.662	-0.21375					43	16	4	0	0	0	0.28753	1	6878	6878		77.318	8.8329	1	1712200			90348	4995	62842	62945	100576	100576					0.08774889028472899
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.3195190429688	2	539.318774	1076.623	-1.1719	-0.00063201	0.95927	0.00051735	-0.21259	-0.00011465	539.3191224608601	61.332	0.70252	61.156	60.914	61.617	-0.1761					43	16	4	0	0	0	0.48817	1	6866	6866		60.118	6.7668	1	1850400			90349	4995	62842	62945	100577	100577					0.08774889028472899
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;TNS3|p.L872Pfs*129|1|0.22|ENSG00000136205|chr7:47344778-47344790|GCTGGGCTGCTCA/-|frameshift_variant	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.318603515625	2	539.318774	1076.623	-1.2467	-0.00067236	1.0046	0.00054178	-0.24212	-0.00013058	539.3191317539511	61.537	0.85048	61.279	61.008	61.859	-0.25725					50	20	4	0	0	0	0.6238	1	6872	6872		51.193	7.0759	1	2135600			90350	4995	62842	62945	100578	100578					0.08774889028472899
YITHESDDL	9	Unmodified	_YITHESDDL_					0	0	0		ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	ENSG00000184304|ENST00000331968|PRKD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	546.7816162109375	2	546.745836	1091.47712	-0.60632	-0.0003315	-0.33128	-0.00018113	-0.9376	-0.00051263	546.7448341534844	75.289	0.19202	75.3	75.171	75.363	0.010368					6	4	2	0	0	0	0.024436	1	9167	9167		30.504	3.8107	1	57734			90351	9325	62843	62946	100579	100579					-0.06496038278237393
YITKGWKEV	9	Unmodified	_YITKGWKEV_					0	0	0		nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60	nc|ENSG00000116747|P10155-3|RO60	nc|ENSG00000116747|P10155-3|RO60	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	562.30908203125	2	562.310949	1122.60735	-0.45996	-0.00025864	-3.2755	-0.0018418	-3.7354	-0.0021005	562.3092713126148	69.073	1.2743	69.073	68.641	69.915	0					100	32	4	0	0	0	0.42604	1	8296	8296		64.207	4.089	1	6071100			90352	3573	62844	62947	100580	100580					0.05094602511417179
YITLAGPLGL	10	Unmodified	_YITLAGPLGL_					0	0	0			REV__ENSG00000102878|ENST00000521374|HSF4	REV__ENSG00000102878|ENST00000521374|HSF4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2841796875	2	509.302593	1016.59063	-0.093277	-4.7506E-05	-2.6099	-0.0013292	-2.7032	-0.0013767	509.301909436341	69.937	0.4563	69.687	69.276	69.732	-0.25063					12	10	2	0	0	0	0.03519	1	8139	8139		106.42	39.986	1	107150	+		90353	21334	62845	62948	100581	100581					0.08300101625468415
YITTRQGAD	9	Unmodified	_YITTRQGAD_					0	0	0			REV__nc|ENSG00000170515|Q9UQ80-2|PA2G4	REV__nc|ENSG00000170515|Q9UQ80-2|PA2G4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	512.288818359375	2	512.756538	1023.49852	-0.79246	-0.00040634	-3.0934	-0.0015861	-3.8858	-0.0019925	512.7549602883066	83.997	0.52258	83.997	83.692	84.215	0					14	11	2	0	0	0	0.024405	1	10499	10499		27.882	0	1	92179	+		90354	26482	62846	62949	100582	100582					-0.012286084588595259
YITVMTRKKT	10	Unmodified	_YITVMTRKKT_					0	0	0			REV__GPR18|p.T56M|1|0.33|ENSG00000125245|chr13:99255706-99255706|G/A|missense_variant	REV__GPR18|p.T56M|1|0.33|ENSG00000125245|chr13:99255706-99255706|G/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2144775390625	3	414.240919	1239.70093	0.31084	0.00012876	-2.4034	-0.00099557	-2.0925	-0.00086681	414.2397137438371	24.32	0.22079	24.32	24.253	24.474	0					6	4	2	0	0	0	0.03519	1	1049	1049		45.022	3.5956	1	43381	+		90355	36081	62847	62950	100583	100583					0.09066578622173438
YIVEPQEV	8	Unmodified	_YIVEPQEV_					0	0	0		nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	488.7496337890625	2	488.752933	975.491313	-0.3781	-0.0001848	-2.898	-0.0014164	-3.2761	-0.0016012	488.7514163545394	28.667	2.3901	28.748	26.628	29.018	0.080812					100	60	4	0	0	0	0.96769	1	1630	1630		42.396	1.8235	1	2139000			90356	1513	62848	62951	100584	100584					0.002586589407201245
YIVIFYLF	8	Unmodified	_YIVIFYLF_					0	0	0			REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF	REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	539.7637939453125	2	539.304604	1076.59466	-0.61823	-0.00033341	4.3328	0.0023367	3.7145	0.0020033	539.3060177502979	34.346	0.37836	34.341	34.112	34.491	-0.0045624					14	9	2	0	0	0	0.027866	1	2505	2505		54.895	8.9426	1	63551	+		90357	30113	62849	62952	100585	100585					0.05942191119174822
YIVVGIVAW	9	Unmodified	_YIVVGIVAW_					0	0	0		nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;SLC44A4|p.N144Kfs*55|1|0.24|ENSG00000204385|chr6:31874757-31874758|-/T|frameshift_variant	nc|ENSG00000204385|Q53GD3-4|SLC44A4	nc|ENSG00000204385|Q53GD3-4|SLC44A4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	511.2827453613281	2	510.299853	1018.58515	-1.005	-0.00051286	-2.8853	-0.0014724	-3.8903	-0.0019852	510.2982892873625	61.851	0.60155	61.673	61.203	61.804	-0.17781					20	14	2	0	0	0	0.024389	1	6884	6884		39.021	0	1	179030			90358	10338	62850	62953	100586	100586					0.07660422833657776
YIVVYFVL	8	Unmodified	_YIVVYFVL_					0	0	0		ENST00000301919.8_1_11:105878863-105879127:-|nuORF	ENST00000301919.8_1_11:105878863-105879127:-|nuORF	ENST00000301919.8_1_11:105878863-105879127:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.7958984375	2	508.296779	1014.57901	-1.4942	-0.0007595	2.6737	0.0013591	1.1795	0.00059955	508.29808545418274	21.316	0.53676	21.103	20.921	21.458	-0.2128					14	10	2	0	0	0	0.027866	1	634	634		43.626	10.11	1	72172			90359	11940	62851	62954	100587	100587					0.07229904602138504
YIWILIIC	8	Unmodified	_YIWILIIC_					0	0	0			REV__ENSG00000203737|ENST00000367685|GPR52	REV__ENSG00000203737|ENST00000367685|GPR52	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7703857421875	2	518.798632	1035.58271	-1.3119	-0.00068063	1.9078	0.00098975	0.59583	0.00030912	518.7992302373564	35.943	0.41537	35.943	35.647	36.063	0					17	10	2	0	0	0	0.027866	1	2793	2793		54.895	0.11826	1	114280	+		90360	28543	62852	62955	100588	100588					0.06634251104378563
YIYLFADN	8	Unmodified	_YIYLFADN_					0	0	0			REV__ENSG00000119684|ENST00000355774|MLH3	REV__ENSG00000119684|ENST00000355774|MLH3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	509.7734069824219	2	509.74765	1017.48075	-0.42549	-0.00021689	3.4721	0.0017699	3.0466	0.001553	509.74941520018143	69.087	2.6112	69.102	67.462	70.073	0.015121					87	67	2	0	0	0	0.027866	1	8293	8293		46.766	0	1	364760	+		90361	22474	62853	62956	100589	100589					-0.027293237137314463
YKCGISKACP	10	Carbamidomethyl (C)	_YKC(Carbamidomethyl (C))GISKACP_	YKC(1)GISKACP		YKC(60)GISKAC(-60)P		0	1	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	563.2705688476562	2	563.772819	1125.53109	0.026017	1.4668E-05	-1.9194	-0.0010821	-1.8934	-0.0010675	563.771500824458	64.139	0.43855	63.946	63.638	64.077	-0.19243					21	10	3	0	0	0	0.03519	1	7286	7286		65.465	35.148	2	501880			90362	9937	62854	62957	100590	100590	135				-0.026658606518822126
YKDIIREHKRK	11	Unmodified	_YKDIIREHKRK_					0	0	0			REV__ENSG00000173145|ENST00000371361|NOC3L	REV__ENSG00000173145|ENST00000371361|NOC3L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.9588623046875	3	495.959803	1484.85758	0.1597	7.9203E-05	-1.6235	-0.00080517	-1.4638	-0.00072597	495.95869291912163	102.24	1.8619	102.11	101.46	103.32	-0.12931					117	44	4	0	0	0	1.0811	1	12713	12713		16.53	0	1	658600	+		90363	26743	62855	62958	100591	100591					0.1345457983684355
YKELALVVE	9	Unmodified	_YKELALVVE_					0	0	0			REV__ENSG00000117643|ENST00000374332|MAN1C1	REV__ENSG00000117643|ENST00000374332|MAN1C1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2973022460938	2	532.305332	1062.59611	-0.32534	-0.00017318	0.028644	1.5247E-05	-0.2967	-0.00015794	532.3050566077716	61.235	0.60517	61.029	60.695	61.301	-0.20599					24	14	2	0	0	0	0.02435	1	6858	6858		42.396	19.354	1	403600	+		90364	22367	62856	62959	100592	100592					0.06731780417271693
YKFDFPVSY	9	Unmodified	_YKFDFPVSY_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-3|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	583.28125	2	583.281857	1164.54916	-1.6808	-0.00098037	0.71304	0.0004159	-0.96774	-0.00056447	583.2821717290798	73.013	0.7763	73.013	72.74	73.516	0					59	19	4	0	0	0	0.016758	1	8903	8903		153.04	75.718	1	1958300			90365	5035	62857	62960	100593	100593					-0.026530791338473136
YKFDFPVSY	9	Unmodified	_YKFDFPVSY_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-3|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	583.281857	1164.54916	-1.028	-0.00059959	-0.0025814	-1.5057E-06	-1.0305	-0.0006011	583.2815936951617	73.38	1.0631	73.109	72.475	73.538	-0.27126	0.055155	-0.00010128	NaN	153.04	75	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1829700			90366	5035	62857	62960							-0.026530791338473136
YKFDFPVSY	9	Unmodified	_YKFDFPVSY_					0	0	0		ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;nc|ENSG00000136699|Q9NXE4-3|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	ENSG00000136699|ENST00000680298|SMPD4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	583.281857	1164.54916	0.27892	0.00016269	-1.0895	-0.00063548	-0.81057	-0.00047279	583.2811031232956	73.029	0.74197	73.039	72.777	73.519	0.0096512	-0.014691	-0.0013692	NaN	153.04	71	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1641300			90367	5035	62857	62960							-0.026530791338473136
YKGKKPATL	9	Unmodified	_YKGKKPATL_					0	0	0		nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1;nc|ENSG00000173610|P0DTE4-1|UGT2A1;ENSG00000173610|ENST00000286604|UGT2A1	nc|ENSG00000271271|P0DTE5-2|UGT2A2	nc|ENSG00000271271|P0DTE5-2|UGT2A2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	503.3087158203125	2	503.30821	1004.60187	-0.27012	-0.00013595	0.49727	0.00025028	0.22716	0.00011433	503.3083143409052	65.064	1.0766	65.101	64.743	65.82	0.037384					72	29	4	0	0	0	0.43973	1	7598	7598		63.306	8.53	1	5379200			90368	11005	62858	62961	100594	100594					0.09974923719596518
YKGWRGRLKF	10	Unmodified	_YKGWRGRLKF_					0	0	0		ENSG00000184156|ENST00000388996|KCNQ3;ENST00000519589.1_1_8:133153289-133492518:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3	ENSG00000184156|ENST00000388996|KCNQ3	ENSG00000184156|ENST00000388996|KCNQ3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	437.5267028808594	3	437.58753	1309.74076	0.32393	0.00014175	1.53	0.00066952	1.854	0.00081127	437.5878597484181	52.594	0.5659	52.404	52.188	52.754	-0.18982					17	13	2	0	0	0	0.03519	1	5502	5502		54.722	28.659	1	103450			90369	9309	62859	62962	100595	100595					0.09827886407765618
YKGWRGRLKF	10	Unmodified	_YKGWRGRLKF_					0	0	0		ENSG00000184156|ENST00000388996|KCNQ3;ENST00000519589.1_1_8:133153289-133492518:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3	ENSG00000184156|ENST00000388996|KCNQ3	ENSG00000184156|ENST00000388996|KCNQ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	437.58753	1309.74076	0.41302	0.00018073	1.7256	0.00075512	2.1387	0.00093585	437.58818400834315	52.885	0.2799	52.626	52.403	52.683	-0.25838	0.11114	8.1422E-05	NaN	54.722	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93295			90370	9309	62859	62962							0.09827886407765618
YKIPYTTVL	9	Unmodified	_YKIPYTTVL_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1;ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.7909545898438	2	549.3157	1096.61685	-0.0048057	-2.6398E-06	-0.91672	-0.00050357	-0.92152	-0.00050621	549.3150917896094	66.305	0.39754	66.305	65.95	66.348	0					15	11	2	0	0	0	0.024427	1	7881	7881		51.335	8.9393	1	501910			90371	6066	62860	62963	100596	100596					0.07240370796921525
YKITVKRY	8	Unmodified	_YKITVKRY_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.3353881835938	2	535.821484	1069.62842	-0.3071	-0.00016455	-3.8907	-0.0020847	-4.1978	-0.0022493	535.819174603148	18.243	0.34694	18.039	17.866	18.212	-0.20371					13	6	3	0	0	0	0.027866	1	252	252		34.173	3.6689	1	64690	+		90372	34932	62861	62964	100597	100597					0.09638612610956443
YKITVKRY	8	Unmodified	_YKITVKRY_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	535.821484	1069.62842	2.9009	0.0015544	-7.0405	-0.0037724	-4.1395	-0.002218	535.8176901895459	17.923	0.34115	17.923	17.746	18.087	0	-0.08351	-0.0019996	NaN	34.173	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53788	+		90373	34932	62861	62964							0.09638612610956443
YKITVKRY	8	Unmodified	_YKITVKRY_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	535.821484	1069.62842	-0.14533	-7.7873E-05	-3.9215	-0.0021012	-4.0669	-0.0021791	535.8191558749684	18.121	0.3927	17.99	17.712	18.105	-0.13147	-0.016988	0.0013428	NaN	34.173	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63334	+		90374	34932	62861	62964							0.09638612610956443
YKKKKKKKASA	11	Unmodified	_YKKKKKKKASA_					0	0	0		ENST00000374723.5_1_9:108152705-108152840:+|nuORF	ENST00000374723.5_1_9:108152705-108152840:+|nuORF	ENST00000374723.5_1_9:108152705-108152840:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	436.9337158203125	3	436.62224	1306.84489	0.38527	0.00016822	-2.4635	-0.0010756	-2.0782	-0.00090739	436.6210536010482	21.085	0.6871	20.889	20.632	21.319	-0.19577					27	13	3	0	0	0	0.024816	1	589	589		16.53	10.831	1	47748			90375	13130	62862	62965	100598	100598					0.20374168444664065
YKKKKKKKASA	11	Unmodified	_YKKKKKKKASA_					0	0	0		ENST00000374723.5_1_9:108152705-108152840:+|nuORF	ENST00000374723.5_1_9:108152705-108152840:+|nuORF	ENST00000374723.5_1_9:108152705-108152840:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	436.62224	1306.84489	0.14512	6.3363E-05	-2.2052	-0.00096285	-2.0601	-0.00089949	436.6211912039855	20.998	0.58084	20.821	20.533	21.113	-0.17721	-0.063258	-0.00042175	NaN	15.337	33	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70296			90376	13130	62862	62965							0.20374168444664065
YKKNKRKE	8	Unmodified	_YKKNKRKE_					0	0	0		ENST00000513680.5_1_6:15524894-15660633:-|nuORF;nc|ENSG00000047579|Q96EV8-3|DTNBP1;ENST00000506844.1_1_6:15524658-15660633:-|nuORF;nc|ENSG00000047579|Q96EV8-2|DTNBP1;ENST00000510395.5_1_6:15523208-15651611:-|nuORF;ENSG00000047579|ENST00000344537|DTNBP1	ENST00000513680.5_1_6:15524894-15660633:-|nuORF	ENST00000513680.5_1_6:15524894-15660633:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.303466796875	2	547.327465	1092.64038	0.92642	0.00050705	-3.18	-0.0017405	-2.2536	-0.0012335	547.3252877764155	37.146	0.34229	37.146	36.927	37.269	0					15	8	3	0	0	0	0.027866	1	3018	3018		40.573	7.057	1	99932			90377	1104	62863	62966	100599	100599					0.09776229354133648
YKLANEKKL	9	Unmodified	_YKLANEKKL_					0	0	0			REV__ENSG00000072364|ENST00000265343|AFF4	REV__ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	553.830078125	2	553.832049	1105.64954	-0.79305	-0.00043922	-2.9644	-0.0016418	-3.7575	-0.002081	553.830293690753	89.15	3.4609	88.987	88.181	91.641	-0.1626					317	82	5	0	0	0	0.77768	1	11074	11074		40.778	0	1	6583300	+		90378	20470	62864	62967	100600	100600					0.10094577919812764
YKLKKSLG	8	Unmodified	_YKLKKSLG_					0	0	0		ENST00000521913.6_3_8:26514547-26514706:+|nuORF	ENST00000521913.6_3_8:26514547-26514706:+|nuORF	ENST00000521913.6_3_8:26514547-26514706:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	469.74566650390625	2	468.797478	935.580402	0.21017	9.8527E-05	-3.7386	-0.0017526	-3.5284	-0.0016541	468.79591241294594	19.96	0.38752	19.792	19.522	19.909	-0.16774					13	7	3	0	0	0	0.027866	1	464	464		23.042	0	1	37596			90379	16018	62865	62968	100601	100601					0.11003538690897585
YKPLAPSLPP	10	Unmodified	_YKPLAPSLPP_					0	0	0			REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	541.7532348632812	2	541.815867	1081.61718	-1.0354	-0.00056102	-3.3976	-0.0018409	-4.433	-0.0024019	541.8143237510884	38.291	0.16513	38.07	38.021	38.187	-0.22149					7	4	2	0	0	0	0.03519	1	3147	3147		32.812	22.547	1	140660	+		90380	28568	62866	62969	100602	100602					0.07963790516782865
YKPNVDAIVDL	11	Unmodified	_YKPNVDAIVDL_					0	0	0			REV__nc|ENSG00000165617|Q9NYF0|DACT1	REV__nc|ENSG00000165617|Q9NYF0|DACT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	416.2323913574219	3	416.227444	1245.6605	-0.28943	-0.00012047	1.5854	0.00065988	1.2959	0.00053941	416.228065629538	23.434	0.6609	23.373	23.152	23.813	-0.06086					26	15	3	0	0	0	0.024759	1	967	967		23.378	0	1	117470	+		90381	36876	62867	62970	100603	100603					0.04749935503446068
YKPNVDAIVDL	11	Unmodified	_YKPNVDAIVDL_					0	0	0			REV__nc|ENSG00000165617|Q9NYF0|DACT1	REV__nc|ENSG00000165617|Q9NYF0|DACT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	416.227444	1245.6605	-0.30424	-0.00012663	1.6152	0.00067228	1.3109	0.00054565	416.2280371832205	23.35	0.61963	23.427	23.114	23.734	0.076241	0.026656	1.2086E-05	NaN	35.178	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118130	+		90382	36876	62867	62970							0.04749935503446068
YKQFAMLL	8	Unmodified	_YKQFAMLL_					0	0	0			REV__ENSG00000113845|ENST00000494664|TIMMDC1	REV__ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	507.8002014160156	2	507.278063	1012.54157	0.22543	0.00011436	-0.29031	-0.00014727	-0.064882	-3.2913E-05	507.27723226668576	51.991	0.21837	51.807	51.634	51.852	-0.18405					7	5	2	0	0	0	0.027866	1	5359	5359		35.201	9.7505	1	57441	+		90383	22095	62868	62971	100604	100604					0.03580490064882724
YKQLPFLL	8	Unmodified	_YKQLPFLL_					0	0	0		ENSG00000162396|ENST00000371279|PARS2	ENSG00000162396|ENST00000371279|PARS2	ENSG00000162396|ENST00000371279|PARS2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.31011962890625	2	511.307678	1020.6008	-0.22061	-0.0001128	0.4054	0.00020728	0.18478	9.4481E-05	511.30778107236983	107.47	0.10033	107.47	107.4	107.5	0.0026016					4	2	2	0	0	0	0.95417	1	13712	13712		44.531	0.41427	1	176030			90384	6936	62869	62972	100605	100605					0.09132709350694768
YKQMIREYKPL	11	Unmodified	_YKQMIREYKPL_					0	0	0			REV__ENSG00000174607|ENST00000310836|UGT8	REV__ENSG00000174607|ENST00000310836|UGT8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	490.75543212890625	3	490.270878	1467.79081	-0.74314	-0.00036434	-1.5809	-0.00077508	-2.3241	-0.0011394	490.2700913539423	43.464	0.21563	43.464	43.332	43.548	0					7	5	2	0	0	0	0.024876	1	4057	4057		9.2118	0	1	147480	+		90385	26881	62870	62973	100606	100606					0.07562208230774559
YKQSTGAINI	10	Unmodified	_YKQSTGAINI_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.7998046875	2	547.795663	1093.57677	-0.79396	-0.00043493	0.80877	0.00044304	0.014803	8.1091E-06	547.7962115716421	53.726	0.93283	53.822	53.556	54.489	0.095669					54	26	4	0	0	0	0.72729	1	5766	5766		65.465	6.6834	1	7747700	+		90386	24228	62871	62974	100607	100607					0.03372824126381602
YKRDRALKQ	9	Unmodified	_YKRDRALKQ_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1;nc|ENSG00000116833|O00482-3|NR5A2;nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2	ENSG00000136931|ENST00000373588|NR5A1;nc|ENSG00000116833|O00482-3|NR5A2	ENSG00000136931|ENST00000373588|NR5A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.34326171875	2	589.343646	1176.67274	-0.89938	-0.00053004	-0.0073699	-4.3434E-06	-0.90675	-0.00053439	589.3435287738987	95.622	0.99408	95.471	95.142	96.136	-0.15186					57	22	3	0	0	0	0.80003	1	11802	11802		39.253	13.679	1	942320			90387	5068;3584	62872	62975	100608	100608					0.09147016757128767
YKSKIVKGID	10	Unmodified	_YKSKIVKGID_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8432006835938	2	575.845156	1149.67576	0.50468	0.00029062	-4.1927	-0.0024144	-3.6881	-0.0021238	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.94316	1	11191	11191		51.193	9.7661	1	1452500			90388	9847	62873	62976	100609	100609					0.10690847091291289
YKSKIVKGID	10	Unmodified	_YKSKIVKGID_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.843017578125	2	575.845156	1149.67576	-0.59889	-0.00034487	-3.2038	-0.0018449	-3.8027	-0.0021898	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	1.0236	2	10870	10870;10882		42.864	0.46813	1	2151700			90389	9847	62873	62976	100610;100611	100610					0.10690847091291289
YKSKIVKGID	10	Unmodified	_YKSKIVKGID_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8432006835938	2	575.845156	1149.67576	-0.51071	-0.00029409	-3.3307	-0.0019179	-3.8414	-0.002212	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.80817	1	10873	10873		60.118	8.9256	1	2085600			90390	9847	62873	62976	100612	100612					0.10690847091291289
YKSKIVKGID	10	Unmodified	_YKSKIVKGID_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.8427124023438	2	575.845156	1149.67576	-0.05705	-3.2852E-05	-3.7845	-0.0021793	-3.8416	-0.0022121	575.8428303443973	89.143	1.6815	89.006	88.356	90.038	-0.13762					130	39	4	0	0	0	1.0236	1	10888	10888		42.864	5.0528	1	1877500			90391	9847	62873	62976	100613	100613					0.10690847091291289
YKSMGACFTHE	11	Unmodified	_YKSMGACFTHE_					0	0	0			REV__nc|ENSG00000257017|P00738-2|HP	REV__nc|ENSG00000257017|P00738-2|HP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	425.1817932128906	3	425.182853	1272.52673	-0.059741	-2.5401E-05	-3.8335	-0.0016299	-3.8932	-0.0016553	425.1818756525927	34.648	1.5417	34.441	34.082	35.623	-0.20696					149	38	7	0	0	0	0.98082	1	2589	2589		41.08	8.0407	1	51056000	+		90392	29084	62874	62977	100614	100614					-0.09863369865433924
YKSPVILL	8	Unmodified	_YKSPVILL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	466.7943115234375	2	466.794404	931.574254	-1.2251	-0.00057185	1.3367	0.00062398	0.11168	5.2132E-05	466.7948510215806	65.066	0.67812	64.804	64.494	65.172	-0.2626					50	17	4	0	0	0	0.59392	1	7659	7659		76.847	5.4687	1	2804100			90393	349	62875	62978	100615	100615					0.10573020459389681
YKSPVILL	8	Unmodified	_YKSPVILL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	466.794404	931.574254	-0.96849	-0.00045209	1.1364	0.00053046	0.1679	7.8373E-05	466.79475318847955	64.799	0.76651	64.799	64.46	65.226	0	0.0026925	0.00024376	NaN	76.847	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2283400			90394	349	62875	62978							0.10573020459389681
YKSPVILL	8	Unmodified	_YKSPVILL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;chr15:89293997-89294957|500|15.88|0.76|4.38|+|ENST00000676003|FANCI,FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	466.794404	931.574254	0.1394	6.507E-05	0.15235	7.1115E-05	0.29174	0.00013618	466.7942471665978	64.746	0.74252	64.787	64.482	65.224	0.040771	-0.00988	-0.00067493	NaN	76.847	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2534200			90395	349	62875	62978							0.10573020459389681
YKTRLKQLLHW	11	Unmodified	_YKTRLKQLLHW_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	495.9588623046875	3	495.961144	1484.8616	0.11895	5.8993E-05	-3.996	-0.0019818	-3.877	-0.0019229	495.9586334061718	102.37	1.6075	102.2	101.47	103.08	-0.17178					122	38	5	0	0	0	1.09	1	12758	12758		14.086	2.1536	1	585730			90396	5360	62876	62979	100616	100616					0.13856669330584737
YKVLRGVLKAL	11	Unmodified	_YKVLRGVLKAL_					0	0	0		SMG8|p.V989L|1|0.2|ENSG00000167447|chr17:59214991-59214991|G/T|missense_variant	SMG8|p.V989L|1|0.2|ENSG00000167447|chr17:59214991-59214991|G/T|missense_variant	SMG8|p.V989L|1|0.2|ENSG00000167447|chr17:59214991-59214991|G/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	630.4188232421875	2	630.41354	1258.81253	-1.6154	-0.0010184	3.1892	0.0020105	1.5738	0.00099212	630.4153850565515	106.1	0.84816	105.97	105.73	106.58	-0.13279					66	37	3	0	0	0	1.0898	1	13210	13210		14.137	1.9303	1	605230			90397	37909	62877	62980	100617	100617					0.19347381041666267
YKYDARQNV	9	Unmodified	_YKYDARQNV_					0	0	0			REV__ENSG00000138161|ENST00000392790|CUZD1	REV__ENSG00000138161|ENST00000392790|CUZD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	578.78857421875	2	578.790912	1155.56727	-1.185	-0.00068585	-2.6586	-0.0015388	-3.8436	-0.0022246	578.7892749770194	23.891	0.56157	23.844	23.571	24.133	-0.047148					39	12	4	0	0	0	0.6504	1	981	981		49.442	0	1	744800	+		90398	23828	62878	62981	100618	100618					-0.004289441591481591
YKYDARQNV	9	Unmodified	_YKYDARQNV_					0	0	0			REV__ENSG00000138161|ENST00000392790|CUZD1	REV__ENSG00000138161|ENST00000392790|CUZD1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	578.790912	1155.56727	-1.185	-0.00068585	-2.6586	-0.0015388	-3.8436	-0.0022246	578.7892749770194	23.891	0.56157	23.844	23.571	24.133	-0.047148	-0.0021685	-0.00018215	NaN	49.442	39	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	744800	+		90399	23828	62878	62981							-0.004289441591481591
YLAAPLLLP	9	Unmodified	_YLAAPLLLP_					0	0	0		ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	486.2977294921875	2	485.802229	969.589904	-0.25042	-0.00012165	-2.1955	-0.0010666	-2.4459	-0.0011882	485.8003019650843	67.521	0.4364	67.233	66.951	67.388	-0.28834					15	10	2	0	0	0	0.024289	1	8040	8040		39.021	0	1	251490			90400	3789	62879	62982	100619	100619					0.10389306976423995
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	542.3080444335938	2	542.307875	1082.6012	-0.90822	-0.00049254	0.65275	0.00035399	-0.25547	-0.00013854	542.3081239020605	80.014	2.5013	80.014	79.489	81.99	0					142	60	5	0	0	0	0.030064	5	9938	9926;9938;9950;9962;9975		141.52	64.203	1	7316200			90401	10737	62880	62983	100620;100621;100622;100623;100624	100621					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	542.3078002929688	2	542.307875	1082.6012	-1.624	-0.0008807	1.2375	0.00067112	-0.38647	-0.00020959	542.3084698884276	80.18	1.9295	80.029	79.715	81.645	-0.15168					135	46	5	0	0	0	0.016542	5	9927	9915;9927;9939;9952;9964		154.12	63.749	1	7629500			90402	10737	62880	62983	100625;100626;100627;100628;100629	100626					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	542.3082275390625	2	542.307875	1082.6012	-1.2526	-0.0006793	1.0506	0.00056976	-0.202	-0.00010954	542.3083557034164	80.016	2.0865	80.037	79.688	81.774	0.021439					148	50	5	0	0	0	0.016542	5	9856	9844;9856;9868;9882;9895		154.12	68.958	1	7462600			90403	10737	62880	62983	100630;100631;100632;100633;100634	100631					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	542.307861328125	2	542.307875	1082.6012	0.06504	3.5272E-05	-0.10329	-5.6014E-05	-0.038247	-2.0742E-05	542.3077986519588	80.032	1.6828	79.786	79.447	81.129	-0.2465					84	40	5	0	0	0	0.013924	5	9565	9557;9565;9577;9589;9602		167.23	65.628	1	4415300			90404	10737	62880	62983	100635;100636;100637;100638;100639	100636					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	542.3078002929688	2	542.307875	1082.6012	0.0025733	1.3955E-06	-0.1453	-7.8798E-05	-0.14273	-7.7403E-05	542.3077926086182	79.982	1.6939	79.763	79.452	81.145	-0.21922					85	40	5	0	0	0	0.013924	5	9592	9569;9580;9592;9604;9619		195.06	81.652	1	4175300			90405	10737	62880	62983	100640;100641;100642;100643;100644	100642					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.3075561523438	2	542.307875	1082.6012	-0.66718	-0.00036182	0.60056	0.00032569	-0.06662	-3.6129E-05	542.3081901916842	79.894	2.1574	79.744	79.404	81.562	-0.15051					97	51	5	0	0	0	0.013924	5	9553	9541;9553;9565;9577;9592		167.23	65.628	1	4018900			90406	10737	62880	62983	100645;100646;100647;100648;100649	100646					0.06320084279900584
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.7899780273438	2	570.78985	1139.56515	-0.86295	-0.00049256	0.62787	0.00035838	-0.23507	-0.00013418	570.7900788904958	77.979	1.4435	77.979	77.591	79.035	0					99	34	5	0	0	0	0.062871	4	9644	9633;9644;9658;9671		123.99	57.449	1	4129200			90407	2130	62881	62984	100650;100651;100652;100653	100651					0.0009462710302159394
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	570.78955078125	2	570.78985	1139.56515	0.72319	0.00041279	-0.98809	-0.00056399	-0.2649	-0.0001512	570.7891966755955	78.126	1.6923	77.934	77.604	79.296	-0.1921					103	40	4	0	0	0	0.074956	4	9621	9621;9633;9646;9660		119.56	61.746	1	3760500			90408	2130	62881	62984	100654;100655;100656;100657	100654					0.0009462710302159394
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.7896118164062	2	570.78985	1139.56515	-1.0275	-0.00058651	0.90069	0.0005141	-0.12685	-7.2407E-05	570.7902594743964	78.042	1.6926	78.058	77.658	79.351	0.015907					107	40	5	0	0	0	0.040175	4	9560	9560;9569;9582;9594		133.47	66.177	1	3642700			90409	2130	62881	62984	100658;100659;100660;100661	100658					0.0009462710302159394
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	570.791015625	2	570.78985	1139.56515	-0.13454	-7.6792E-05	-0.45959	-0.00026233	-0.59413	-0.00033912	570.7893039269992	78.126	0.93573	77.864	77.571	78.507	-0.26202					63	21	5	0	0	0	0.10076	1	9317	9317		110.34	30.398	1	1847600			90410	2130	62881	62984	100662	100662					0.0009462710302159394
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	570.791015625	2	570.78985	1139.56515	-0.032109	-1.8328E-05	-0.70893	-0.00040465	-0.74104	-0.00042298	570.789221134921	77.962	1.2826	77.8	77.527	78.809	-0.16193					72	29	5	0	0	0	0.36105	1	9297	9297		68.485	17.149	1	2088500			90411	2130	62881	62984	100663	100663					0.0009462710302159394
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2587890625	2	490.258382	978.502212	0.20716	0.00010156	0.14955	7.332E-05	0.35671	0.00017488	490.2582942680947	69.772	0.56976	69.772	69.423	69.993	0					31	13	3	0	0	0	0.19099	1	8420	8420		90.37	18.492	1	1866500			90412	4246	62882	62985	100664	100664					0.012100613149868877
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2586364746094	2	490.258382	978.502212	-0.54516	-0.00026727	0.71926	0.00035262	0.1741	8.5353E-05	490.25857442699703	69.823	0.6412	69.835	69.463	70.104	0.012421					34	15	3	0	0	0	0.027092	2	8337	8337;8348		143.89	37.092	1	2442900			90413	4246	62882	62985	100665;100666	100665					0.012100613149868877
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	490.258382	978.502212	-0.68203	-0.00033437	0.40092	0.00019656	-0.28111	-0.00013781	490.25837814192613	70.203	0.61983	69.935	69.578	70.198	-0.26724	0.080559	0.00024952	NaN	143.89	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	907690			90414	4246	62882	62985							0.012100613149868877
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	490.258382	978.502212	0.099246	4.8656E-05	-0.14195	-6.9593E-05	-0.042706	-2.0937E-05	490.25810092327146	70.15	0.57696	69.899	69.566	70.143	-0.25063	0.044708	-0.00028278	NaN	143.89	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	999870			90415	4246	62882	62985							0.012100613149868877
YLADVTNAL	9	Unmodified	_YLADVTNAL_					0	0	0		nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	nc|ENSG00000127481|Q5T4S7-3|UBR4	nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	490.258382	978.502212	0.38431	0.00018841	-0.63089	-0.0003093	-0.24658	-0.00012089	490.25787807518435	70.055	0.57092	69.832	69.556	70.127	-0.22245	-0.022575	-0.00076219	NaN	143.89	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1302300			90416	4246	62882	62985							0.012100613149868877
YLAEPQWAV	9	Unmodified	_YLAEPQWAV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.7742919921875	2	538.7742	1075.53385	-0.15521	-8.3621E-05	0.21915	0.00011807	0.06394	3.4449E-05	538.7741940710979	75.097	0.97997	74.822	74.519	75.499	-0.27573					73	23	5	0	0	0	0.19099	3	8853	8853;8863;8876		90.37	29.398	1	3367800			90417	1818;17643	62883	62986	100667;100668;100669	100667					-0.0008994593106308457
YLAEPQWAV	9	Unmodified	_YLAEPQWAV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.7742309570312	2	538.7742	1075.53385	-0.45343	-0.0002443	0.58718	0.00031636	0.13376	7.2064E-05	538.7744382730586	75.065	0.90402	74.802	74.489	75.393	-0.26326					63	21	4	0	0	0	0.26966	1	8868	8868		79.713	20.931	1	3498100			90418	1818;17643	62883	62986	100670	100670					-0.0008994593106308457
YLAEPQWAV	9	Unmodified	_YLAEPQWAV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.7745971679688	2	538.7742	1075.53385	-0.43828	-0.00023613	0.33788	0.00018204	-0.1004	-5.4092E-05	538.7742598083668	74.93	0.98874	74.747	74.393	75.382	-0.18279					68	23	5	0	0	0	0.23085	2	8843	8843;8854		84.916	18.486	1	3200300			90419	1818;17643	62883	62986	100671;100672	100671					-0.0008994593106308457
YLAEPQWAV	9	Unmodified	_YLAEPQWAV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.7742	1075.53385	-0.12908	-6.9545E-05	0.0385	2.0743E-05	-0.090581	-4.8803E-05	538.7742655722592	74.798	0.89167	74.798	74.34	75.232	0	0.0016591	-0.0004104	NaN	90.37	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229500			90420	1818;17643	62883	62986							-0.0008994593106308457
YLAEPQWAV	9	Unmodified	_YLAEPQWAV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.L3913Pfs*12|1|0.24|ENSG00000086570|chr5:151512332-151512333|-/GG|frameshift_variant;FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant;FAT2|p.K2069Qfs*3|1|0.08|ENSG00000086570|chr5:151544922-151544923|-/G|frameshift_variant;FAT2|p.N2102Kfs*35|1|0.49|ENSG00000086570|chr5:151544821-151544821|A/-|frameshift_variant;FAT2|p.R2179Kfs*4|1|0.1|ENSG00000086570|chr5:151544591-151544592|-/T|frameshift_variant;FAT2|p.L1947Wfs*18|1|0.05|ENSG00000086570|chr5:151545292-151545293|-/GCCG|frameshift_variant;FAT2|p.P1625Hfs*4|1|0.6|ENSG00000086570|chr5:151546253-151546253|G/-|frameshift_variant;FAT2|p.E545Gfs*15|1|0.27|ENSG00000086570|chr5:151567298-151567299|-/C|frameshift_variant;FAT2|p.W1104Cfs*20|1|0.07|ENSG00000086570|chr5:151563587-151563588|-/ATCA|frameshift_variant;FAT2|p.E324Vfs*48|1|0.19|ENSG00000086570|chr5:151567960-151567961|CT/-|frameshift_variant;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2;FAT2|p.R4147Dfs*52|1|0.23|ENSG00000086570|chr5:151507233-151507233|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.7742	1075.53385	-0.90499	-0.00048759	1.4205	0.00076534	0.51552	0.00027775	538.774727228008	74.801	0.77162	74.812	74.439	75.211	0.010376	0.015836	0.0010788	NaN	90.37	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186930			90421	1818;17643	62883	62986							-0.0008994593106308457
YLALSIPGE	9	Unmodified	_YLALSIPGE_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.28466796875	2	481.7633	961.512048	-0.34922	-0.00016824	4.0156	0.0019346	3.6664	0.0017663	481.76518890902406	55.293	0.78721	55.147	54.647	55.434	-0.14609					33	21	2	0	0	0	0.024477	1	5852	5852		27.882	10.517	1	394200	+		90422	23372	62884	62987	100673	100673					0.029752493203773156
YLALSIPGE	9	Unmodified	_YLALSIPGE_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	481.7633	961.512048	-0.24975	-0.00012032	3.6484	0.0017577	3.3987	0.0016374	481.76500575206495	55.356	0.68431	55.125	54.748	55.432	-0.23087	-0.020246	5.8158E-05	NaN	27.882	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529100	+		90423	23372	62884	62987							0.029752493203773156
YLALSIPGE	9	Unmodified	_YLALSIPGE_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	481.7633	961.512048	-0.029957	-1.4432E-05	3.1513	0.0015182	3.1214	0.0015038	481.76483609415084	55.379	0.66255	55.163	54.749	55.412	-0.21551	0.018249	-0.00042081	NaN	27.882	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435540	+		90424	23372	62884	62987							0.029752493203773156
YLAPFLRNV	9	Unmodified	_YLAPFLRNV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.8133544921875	2	546.813659	1091.61277	-0.59235	-0.0003239	-0.23827	-0.00013029	-0.83061	-0.00045419	546.8139379665557	69.445	0.89751	69.445	69.131	70.029	0					60	22	5	0	0	0	0.17455	1	8371	8371		94.006	33.712	1	1754200			90425	4087	62885	62988	100674	100674					0.0706232609388735
YLAPFLRNV	9	Unmodified	_YLAPFLRNV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.8134155273438	2	546.813659	1091.61277	0.012591	6.8847E-06	-0.21454	-0.00011731	-0.20195	-0.00011043	546.8134498084207	69.768	0.75391	69.475	69.166	69.92	-0.29291					53	18	4	0	0	0	0.17455	1	8379	8379		94.006	35.777	1	1765500			90426	4087	62885	62988	100675	100675					0.0706232609388735
YLAPFLRNV	9	Unmodified	_YLAPFLRNV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.8132934570312	2	546.813659	1091.61277	-1.1191	-0.00061192	-0.006036	-3.3006E-06	-1.1251	-0.00061522	546.8141099506597	69.521	0.86182	69.536	69.245	70.107	0.015121					71	21	5	0	0	0	0.049585	1	8306	8306		128.86	66.754	1	1620800			90427	4087	62885	62988	100676	100676					0.0706232609388735
YLAPFLRNV	9	Unmodified	_YLAPFLRNV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	546.813659	1091.61277	-0.75817	-0.00041458	1.13	0.0006179	0.37183	0.00020332	546.8139648206629	69.74	0.62529	69.472	69.121	69.746	-0.26725	0.034915	0.0011324	NaN	128.86	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762660			90428	4087	62885	62988							0.0706232609388735
YLAPFLRNV	9	Unmodified	_YLAPFLRNV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	546.813659	1091.61277	-0.021929	-1.1991E-05	0.14432	7.8918E-05	0.12239	6.6926E-05	546.8135289579722	69.603	0.5755	69.352	69.115	69.691	-0.25063	-0.085241	5.4437E-05	NaN	128.86	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693560			90429	4087	62885	62988							0.0706232609388735
YLAPFLRNV	9	Unmodified	_YLAPFLRNV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	546.813659	1091.61277	-0.49109	-0.00026853	0.86358	0.00047222	0.37249	0.00020368	546.8138352548996	69.566	0.53558	69.344	69.145	69.68	-0.22245	-0.093691	0.00084103	NaN	128.86	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775970			90430	4087	62885	62988							0.0706232609388735
YLASIVKNL	9	Unmodified	_YLASIVKNL_					0	0	0		ENSG00000172689|ENST00000308287|MS4A10	ENSG00000172689|ENST00000308287|MS4A10	ENSG00000172689|ENST00000308287|MS4A10	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	510.7707824707031	2	510.808042	1019.60153	0.16077	8.2125E-05	-4.0134	-0.0020501	-3.8526	-0.0019679	510.8061755998755	83.284	1.8313	83.193	82.658	84.49	-0.090454					62	42	2	0	0	0	0.019502	1	10522	10522		99.375	11.621	1	122550			90431	8296	62886	62989	100677	100677					0.09251503999746546
YLAVESPFL	9	Unmodified	_YLAVESPFL_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.7815551757812	2	519.778951	1037.54335	0.15601	8.1089E-05	-1.3666	-0.00071035	-1.2106	-0.00062926	519.7789805891592	86.281	1.1086	86.281	85.748	86.857	0					62	25	4	0	0	0	0.016588	3	10828	10828;10839;10853		153.88	39.299	1	1431200			90432	3022	62887	62990	100678;100679;100680	100678					0.026078223544800494
YLAVESPFL	9	Unmodified	_YLAVESPFL_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.7802124023438	2	519.778951	1037.54335	-0.18748	-9.7448E-05	-1.432	-0.00074434	-1.6195	-0.00084178	519.778892882415	86.275	0.9856	86.23	85.904	86.889	-0.045105					58	22	4	0	0	0	0.033883	3	10803	10793;10803;10818		138.48	49.837	1	1499500			90433	3022	62887	62990	100681;100682;100683	100682					0.026078223544800494
YLAVESPFL	9	Unmodified	_YLAVESPFL_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7802734375	2	519.778951	1037.54335	-1.0175	-0.00052889	0.91546	0.00047584	-0.10206	-5.3051E-05	519.7792579967362	86.244	0.94514	86.267	85.902	86.847	0.023666					39	21	2	0	0	0	0.0146	3	10757	10746;10757;10770		163.84	62.633	1	1577500			90434	3022	62887	62990	100684;100685;100686	100685					0.026078223544800494
YLAVESPFL	9	Unmodified	_YLAVESPFL_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.779296875	2	519.778951	1037.54335	-0.057301	-2.9784E-05	-0.08761	-4.5538E-05	-0.14491	-7.5322E-05	519.7787492644566	86.284	0.83131	86.097	85.816	86.647	-0.18696					39	18	3	0	0	0	0.22754	3	10469	10457;10469;10481		85.359	24.388	1	641500			90435	3022	62887	62990	100687;100688;100689	100688					0.026078223544800494
YLAVESPFL	9	Unmodified	_YLAVESPFL_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.7792358398438	2	519.778951	1037.54335	0.88176	0.00045832	-1.0296	-0.00053518	-0.14786	-7.6856E-05	519.7782594216476	86.223	1.0008	86.081	85.711	86.712	-0.14217					42	22	3	0	0	0	0.021668	2	10471	10471;10483		148.21	37.869	1	717610			90436	3022	62887	62990	100690;100691	100690					0.026078223544800494
YLAVESPFL	9	Unmodified	_YLAVESPFL_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7796020507812	2	519.778951	1037.54335	0.36845	0.00019151	-0.48729	-0.00025328	-0.11884	-6.177E-05	519.7785621250068	86.252	0.91414	86.115	85.66	86.574	-0.13734					44	20	3	0	0	0	0.10076	1	10455	10455		110.34	16.331	1	713340			90437	3022	62887	62990	100692	100692					0.026078223544800494
YLAVVHPIK	9	Unmodified	_YLAVVHPIK_					0	0	0		nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.3220825195312	2	520.318577	1038.6226	3.0178	0.0015702	3.3729	0.001755	6.3907	0.0033252	520.3203018630787	17.673	0.68731	17.673	17.498	18.186	0					34	13	4	0	0	0	0.75282	1	191	191		42.474	0.078325	1	1145700			90438	8987	62888	62991	100693	100693					0.1048351409924635
YLAVVHPIK	9	Unmodified	_YLAVVHPIK_					0	0	0		nc|ENSG00000180616|P30874-2|SSTR2;ENSG00000180616|ENST00000357585|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	nc|ENSG00000180616|P30874-2|SSTR2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	520.318577	1038.6226	4.4637	0.0023226	2.1067	0.0010961	6.5704	0.0034187	520.319647243736	17.948	0.27273	18.008	17.864	18.137	0.06036	0.20597	-0.0028282	NaN	42.474	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20850			90439	8987	62888	62991							0.1048351409924635
YLAYLKLKVEN	11	Unmodified	_YLAYLKLKVEN_					0	0	0			REV__ENST00000464057.5_1_6:4126367-4135774:-|nuORF	REV__ENST00000464057.5_1_6:4126367-4135774:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.93243408203125	3	451.930739	1352.77039	0.95574	0.00043193	3.4973	0.0015805	4.453	0.0020125	451.93215521600763	97.035	2.3592	96.912	95.552	97.912	-0.12368					183	54	5	0	0	0	1.0499	1	12102	12102		25.126	5.0955	1	477030	+		90440	28455	62889	62992	100694	100694					0.10811360842626527
YLCNIGDLEL	10	Unmodified	_YLCNIGDLEL_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.7825927734375	2	576.783907	1151.55326	-0.24821	-0.00014316	-2.6042	-0.0015021	-2.8524	-0.0016452	576.7822400949027	65.926	1.9371	65.684	64.6	66.538	-0.24145					163	49	4	0	0	0	1.0508	1	7580	7580		39.253	1.4413	1	1844500			90441	18723	62890	62993	100695	100695					-0.016453577024549304
YLCNIGDLEL	10	Unmodified	_YLCNIGDLEL_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.7822265625	2	576.783907	1151.55326	-1.2871	-0.00074239	-1.5693	-0.00090512	-2.8564	-0.0016475	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	0.66532	2	7555	7542;7555		69.628	9.5094	1	1856800			90442	18723	62890	62993	100696;100697	100697					-0.016453577024549304
YLCNIGDLEL	10	Unmodified	_YLCNIGDLEL_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7833862304688	2	576.783907	1151.55326	-0.73592	-0.00042447	-2.0573	-0.0011866	-2.7932	-0.0016111	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	0.91678	1	7525	7525		52.937	6.1703	1	1832600			90443	18723	62890	62993	100698	100698					-0.016453577024549304
YLCPICDLSF	10	Carbamidomethyl (C)	_YLCPIC(Carbamidomethyl (C))DLSF_	YLC(0.145)PIC(0.855)DLSF		YLC(-7.7)PIC(7.7)DLSF		0	1	0		nc|ENSG00000204644|Q9NU63|ZFP57;nc|ENSG00000204644|Q9NU63-2|ZFP57;ENSG00000204644|ENST00000376883|ZFP57	nc|ENSG00000204644|Q9NU63|ZFP57	nc|ENSG00000204644|Q9NU63|ZFP57	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	410.8585510253906	3	410.855965	1229.54607	-0.26326	-0.00010816	4.2755	0.0017566	4.0122	0.0016484	410.8579355764158	30.371	0.76228	30.127	29.82	30.582	-0.24415					47	17	5	0	0	0	1.0236	1	1933	1933		42.864	7.686	2	1454700			90444	10365	62891	62994	100699	100699	145				-0.059524135745732565
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	571.2737426757812	2	571.274229	1140.53391	-0.073432	-4.195E-05	-0.39812	-0.00022743	-0.47155	-0.00026938	571.2739262871555	56.589	1.7239	56.422	56.001	57.725	-0.1672					144	43	5	0	0	0	0.01388	7	6118	6108;6118;6130;6142;6154;6166;6179		180.87	93.173	1	44754000			90445	4465	62892	62995	100700;100701;100702;100703;100704;100705;100706	100701					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	571.2740478515625	2	571.274229	1140.53391	0.36535	0.00020872	-0.86326	-0.00049316	-0.49791	-0.00028444	571.2736361869961	56.627	1.6064	56.425	56.132	57.738	-0.20208					141	42	5	0	0	0	0.01388	7	6153	6119;6129;6141;6153;6165;6177;6192		209.84	120.22	1	48493000			90446	4465	62892	62995	100707;100708;100709;100710;100711;100712;100713	100710					-0.030739907217139262
YLDDPDLKY	9	Unmodified	_YLDDPDLKY_					0	0	0		nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358|DNMT1	nc|ENSG00000130816|P26358|DNMT1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	571.273681640625	2	571.274229	1140.53391	0.32372	0.00018493	-0.89989	-0.00051408	-0.57618	-0.00032915	571.2736137053157	56.67	1.6799	56.446	56.069	57.749	-0.2248					157	42	5	0	0	0	0.01388	7	6111	6111;6123;6135;6147;6159;6171;6193		209.84	122.09	1	48084000			90447	4465	62892	62995	100714;100715;100716;100717;100718;100719;100720	100714					-0.030739907217139262
YLDDPDPD	8	Unmodified	_YLDDPDPD_					0	0	0		nc|ENSG00000128595|O43852-7|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-2|CALU;nc|ENSG00000128595|O43852-4|CALU	nc|ENSG00000128595|O43852-7|CALU	nc|ENSG00000128595|O43852-7|CALU	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	474.79730224609375	2	475.192905	948.371257	0.10249	4.8704E-05	1.3608	0.00064664	1.4633	0.00069535	475.19338224341556	32.922	0.53414	32.691	32.462	32.997	-0.23107					22	12	3	0	0	0	0.027866	1	2336	2336		25.45	13.243	1	256930			90448	18256	62893	62996	100721	100721					-0.10499374123719463
YLDDPDPD	8	Unmodified	_YLDDPDPD_					0	0	0		nc|ENSG00000128595|O43852-7|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-2|CALU;nc|ENSG00000128595|O43852-4|CALU	nc|ENSG00000128595|O43852-7|CALU	nc|ENSG00000128595|O43852-7|CALU	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	475.192905	948.371257	0.07197	3.42E-05	1.2879	0.00061202	1.3599	0.00064622	475.1934053022532	33.051	0.40746	32.851	32.609	33.016	-0.20019	0.11836	-0.00021231	NaN	25.45	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302860			90449	18256	62893	62996							-0.10499374123719463
YLDDPDPD	8	Unmodified	_YLDDPDPD_					0	0	0		nc|ENSG00000128595|O43852-7|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-2|CALU;nc|ENSG00000128595|O43852-4|CALU	nc|ENSG00000128595|O43852-7|CALU	nc|ENSG00000128595|O43852-7|CALU	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	475.192905	948.371257	-0.42571	-0.0002023	1.8592	0.00088348	1.4335	0.00068118	475.1936177416278	32.821	0.60294	32.655	32.395	32.998	-0.16565	-0.077213	0.0003306	NaN	25.45	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407270			90450	18256	62893	62996							-0.10499374123719463
YLDESKQLY	9	Unmodified	_YLDESKQLY_					0	0	0		ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.7901000976562	2	579.787504	1157.56045	-0.22714	-0.00013169	0.05497	3.1871E-05	-0.17217	-9.982E-05	579.7873019695255	49.388	1.1399	49.287	48.992	50.131	-0.1008					64	29	4	0	0	0	0.071379	1	4969	4969		120.87	33.114	1	2829400			90451	6626	62894	62997	100722	100722					-0.012023018303580102
YLDESKQLY	9	Unmodified	_YLDESKQLY_					0	0	0		ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.789794921875	2	579.787504	1157.56045	-0.64042	-0.00037131	0.56084	0.00032517	-0.079585	-4.6142E-05	579.787633371715	49.686	0.75314	49.406	49.161	49.914	-0.27977					56	19	4	0	0	0	0.071379	2	5004	4992;5004		120.87	41.417	1	2527100			90452	6626	62894	62997	100723;100724	100724					-0.012023018303580102
YLDESKQLY	9	Unmodified	_YLDESKQLY_					0	0	0		ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.789306640625	2	579.787504	1157.56045	-0.25232	-0.00014629	0.044949	2.6061E-05	-0.20737	-0.00012023	579.7873651037787	49.539	1.3132	49.358	48.704	50.017	-0.18071					65	25	4	0	0	0	0.030064	1	4980	4980		141.52	50.744	1	2937600			90453	6626	62894	62997	100725	100725					-0.012023018303580102
YLDIAITPPN	10	Unmodified	_YLDIAITPPN_					0	0	0		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18;ENST00000467636.1_2_13:21721026-21721478:+|nuORF	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	558.8004760742188	2	558.800414	1115.58628	-0.063725	-3.561E-05	-0.27787	-0.00015528	-0.3416	-0.00019089	558.8000782592148	86.848	1.1125	86.661	85.991	87.104	-0.18696					64	25	4	0	0	0	0.91678	1	10553	10553		52.937	3.4952	1	1049100			90454	6137	62895	62998	100726	100726					0.033105924118899566
YLDIGQVYY	9	Unmodified	_YLDIGQVYY_					0	0	0		ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	567.2791748046875	2	567.279315	1132.54408	0.64011	0.00036312	-1.0968	-0.00062222	-0.45673	-0.0002591	567.2786336238304	79.461	2.3085	79.214	78.738	81.046	-0.2465					156	55	5	0	0	0	0.012965	6	9465	9465;9476;9487;9499;9511;9525		214.25	131.5	1	23757000			90455	795	62896	62999	100727;100728;100729;100730;100731;100732	100727					-0.016893829964601537
YLDIGQVYY	9	Unmodified	_YLDIGQVYY_					0	0	0		ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.2789306640625	2	567.279315	1132.54408	0.31567	0.00017907	-1.0231	-0.00058039	-0.70744	-0.00040132	567.2786601819867	79.442	2.2344	79.223	78.748	80.983	-0.21922					140	53	4	0	0	0	0.012965	6	9475	9475;9484;9495;9507;9519;9534		201.49	124.17	1	24214000			90456	795	62896	62999	100733;100734;100735;100736;100737;100738	100733					-0.016893829964601537
YLDIGQVYY	9	Unmodified	_YLDIGQVYY_					0	0	0		ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	567.279296875	2	567.279315	1132.54408	0.15381	8.7251E-05	-0.79017	-0.00044825	-0.63636	-0.000361	567.2787985416364	79.323	2.3662	79.173	78.694	81.06	-0.15051					161	56	4	0	0	0	0.012965	6	9456	9447;9456;9468;9480;9492;9506		197.6	109.93	1	24636000			90457	795	62896	62999	100739;100740;100741;100742;100743;100744	100740					-0.016893829964601537
YLDIPNPRY	9	Unmodified	_YLDIPNPRY_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.7988891601562	2	575.798206	1149.58186	0.11743	6.7616E-05	-0.20719	-0.0001193	-0.089758	-5.1683E-05	575.7979118891586	60.322	0.93728	60.125	59.575	60.512	-0.19742					56	23	4	0	0	0	0.32811	1	6723	6723		71.877	22.436	1	1988700			90458	3949	62897	63000	100745	100745					0.013051279890078149
YLDIPNPRY	9	Unmodified	_YLDIPNPRY_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.7990112304688	2	575.798206	1149.58186	-0.48301	-0.00027811	0.25211	0.00014516	-0.2309	-0.00013295	575.7981771595137	60.192	0.84307	60.016	59.478	60.322	-0.1761					55	21	4	0	0	0	0.2508	2	6709	6696;6709		82.241	18.707	1	2092900			90459	3949	62897	63000	100746;100747	100747					0.013051279890078149
YLDIPNPRY	9	Unmodified	_YLDIPNPRY_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	575.7988891601562	2	575.798206	1149.58186	-0.64272	-0.00037008	0.41854	0.00024099	-0.22418	-0.00012908	575.798228421434	60.393	0.85889	60.139	59.604	60.463	-0.25373					58	21	4	0	0	0	0.10174	2	6704	6704;6717		110.12	43.691	1	2086800			90460	3949	62897	63000	100748;100749	100748					0.013051279890078149
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.768310546875	2	513.26875	1024.52295	-0.51486	-0.00026426	-0.92088	-0.00047266	-1.4357	-0.00073692	513.268819809957	79.468	1.6715	79.468	79.035	80.707	0					86	39	4	0	0	0	0.18915	2	9844	9844;9848		90.777	16.802	1	6158900			90461	7763;16501	62898	63001	100750;100751	100750					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	513.2689819335938	2	513.26875	1024.52295	-1.1212	-0.00057548	-0.31309	-0.0001607	-1.4343	-0.00073618	513.2691324119681	79.639	3.0855	79.466	78.694	81.78	-0.17226					131	74	5	0	0	0	0.13494	4	9849	9838;9849;9861;9874		102.77	12.404	1	5750600			90462	7763;16501	62898	63001	100752;100753;100754;100755	100753					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.268798828125	2	513.26875	1024.52295	-0.52508	-0.00026951	-0.8309	-0.00042647	-1.356	-0.00069598	513.2687894126938	79.477	1.6634	79.495	78.946	80.609	0.018677					91	39	4	0	0	0	0.29158	4	9784	9761;9784;9796;9809		76.774	5.4806	1	7139400			90463	7763;16501	62898	63001	100756;100757;100758;100759	100757					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	513.2689208984375	2	513.26875	1024.52295	0.55057	0.00028259	-0.96537	-0.00049549	-0.4148	-0.0002129	513.2683446041391	79.629	2.1968	79.382	77.877	80.074	-0.2465					114	51	5	0	0	0	0.10076	2	9512	9512;9524		110.34	14.147	1	6442700			90464	7763;16501	62898	63001	100760;100761	100760					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2689208984375	2	513.26875	1024.52295	0.18164	9.3229E-05	-0.47046	-0.00024147	-0.28882	-0.00014824	513.268486772638	79.61	1.2475	79.391	78.791	80.038	-0.21923					79	29	4	0	0	0	0.096521	4	9532	9511;9521;9532;9544		111.65	26.289	1	6971000			90465	7763;16501	62898	63001	100762;100763;100764;100765	100764					0.011666516946661432
YLDNGVVFV	9	Unmodified	_YLDNGVVFV_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	513.2688598632812	2	513.26875	1024.52295	0.14088	7.2312E-05	-0.40633	-0.00020856	-0.26544	-0.00013624	513.2684968693561	79.52	1.3348	79.369	78.737	80.071	-0.15051					83	31	5	0	0	0	0.08613	3	9498	9498;9510;9523		115.46	33.154	1	7141300			90466	7763;16501	62898	63001	100766;100767;100768	100766					0.011666516946661432
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7691955566406	2	509.769448	1017.52434	0.0075217	3.8343E-06	-0.38026	-0.00019384	-0.37273	-0.00019001	509.76928918565335	41.938	1.0275	41.938	41.542	42.569	0					92	29	5	0	0	0	0.053401	4	3817	3791;3809;3817;3829		127.46	66.49	1	10607000			90467	4448	62899	63002	100769;100770;100771;100772	100771					0.01628285783431238
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7692565917969	2	509.769448	1017.52434	-0.30029	-0.00015308	-0.089887	-4.5822E-05	-0.39018	-0.0001989	509.76946231665676	42.123	1.0371	41.991	41.565	42.602	-0.1322					81	29	4	0	0	0	0.053401	5	3836	3803;3814;3824;3836;3849		127.46	64.155	1	10333000			90468	4448	62899	63002	100773;100774;100775;100776;100777	100776					0.01628285783431238
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7684631347656	2	509.769448	1017.52434	-0.25272	-0.00012883	-0.095554	-4.871E-05	-0.34828	-0.00017754	509.7694006845939	42.078	0.93234	42.104	41.709	42.641	0.026012					85	26	6	0	0	0	0.10174	3	3784	3774;3784;3797		110.12	52.309	1	11535000			90469	4448	62899	63002	100778;100779;100780	100779					0.01628285783431238
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.7694091796875	2	509.769448	1017.52434	-0.58712	-0.0002993	0.72755	0.00037088	0.14043	7.1589E-05	509.7697494905825	42.347	0.80231	42.115	41.803	42.605	-0.23186					51	21	4	0	0	0	0.247	1	3793	3793		82.75	38.219	1	1455700			90470	4448	62899	63002	100781	100781					0.01628285783431238
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	509.76885986328125	2	509.769448	1017.52434	-0.36716	-0.00018717	0.38627	0.00019691	0.019109	9.7412E-06	509.7696853741413	42.365	0.75814	42.135	41.797	42.555	-0.2303					52	20	4	0	0	0	0.22902	2	3798	3798;3810		85.161	39.209	1	1614900			90471	4448	62899	63002	100782;100783	100782					0.01628285783431238
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	509.769448	1017.52434	-0.090065	-4.5912E-05	0.079285	4.0417E-05	-0.01078	-5.4951E-06	509.76948916819794	42.163	0.73635	42.04	41.718	42.454	-0.12299	-0.013968	4.4484E-05	NaN	127.46	57	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1593900			90472	4448	62899	63002							0.01628285783431238
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2791748046875	2	525.279315	1048.54408	-0.92169	-0.00048414	0.079349	4.1681E-05	-0.84234	-0.00044246	525.2790314181227	78.777	1.4633	78.777	78.323	79.786	0					66	34	4	0	0	0	0.10389	2	9768	9756;9768		134.81	46.634	1	1194900			90473	8052	62900	63003	100784;100785	100785					0.02174617003538515
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.2798461914062	2	525.279315	1048.54408	-0.3816	-0.00020045	-0.06235	-3.2751E-05	-0.44395	-0.0002332	525.2792729574229	78.928	0.62343	78.736	78.549	79.172	-0.1921					47	14	5	0	0	0	0.16213	1	9757	9757		125.81	40.653	1	1305200			90474	8052	62900	63003	100786	100786					0.02174617003538515
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	525.2806396484375	2	525.279315	1048.54408	-0.0062753	-3.2963E-06	-0.37752	-0.00019831	-0.3838	-0.0002016	525.2790100447525	78.828	0.70703	78.847	78.567	79.274	0.018677					39	16	3	0	0	0	0.10389	3	9678	9678;9690;9698		134.81	26.142	1	1403000			90475	8052	62900	63003	100787;100788;100789	100787					0.02174617003538515
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	525.279315	1048.54408	0.11732	6.1626E-05	-0.42305	-0.00022222	-0.30573	-0.00016059	525.2788919337903	79.02	0.79923	78.766	78.471	79.27	-0.25471	-0.015295	-0.00013329	NaN	134.81	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432400			90476	8052	62900	63003							0.02174617003538515
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	525.279315	1048.54408	0.18205	9.5625E-05	-0.36514	-0.0001918	-0.18309	-9.6174E-05	525.2789944405469	79.008	0.6701	78.776	78.52	79.19	-0.23141	-0.0045141	-7.2445E-05	NaN	134.81	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475720			90477	8052	62900	63003							0.02174617003538515
YLDPSVLSGV	10	Unmodified	_YLDPSVLSGV_					0	0	0		nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-3|ARL6IP1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	525.279315	1048.54408	0.19293	0.00010134	-0.47395	-0.00024896	-0.28102	-0.00014761	525.2788979140402	78.94	0.59061	78.784	78.514	79.104	-0.15591	0.0033192	-0.00018676	NaN	134.81	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484130			90478	8052	62900	63003							0.02174617003538515
YLDQGTQIFL	10	Unmodified	_YLDQGTQIFL_					0	0	0		nc|ENSG00000197006|Q9H1A3-2|METTL9;ENSG00000197006|ENST00000358154|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	599.3113403320312	2	599.311146	1196.60774	-1.3351	-0.00080012	1.493	0.0008948	0.15798	9.468E-05	599.3119685075253	82.635	0.7296	82.661	82.316	83.045	0.026176					40	15	3	0	0	0	0.44975	1	10244	10244		93.598	3.2278	1	829140			90479	9942	62901	63004	100790	100790					0.017299774406183133
YLDSIPPGQY	10	Unmodified	_YLDSIPPGQY_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.7819213867188	2	576.782222	1151.54989	-0.24821	-0.00014316	0.31789	0.00018335	0.069679	4.0189E-05	576.7822400949027	65.926	1.9371	65.684	64.6	66.538	-0.24145					163	49	4	0	0	0	0.94316	1	7492	7492		51.193	1.7511	1	1844500			90480	8022	62902	63005	100791	100791					-0.019822844848022214
YLDSIPPGQY	10	Unmodified	_YLDSIPPGQY_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.782470703125	2	576.782222	1151.54989	-1.2871	-0.00074239	1.3528	0.00078029	0.065701	3.7895E-05	576.7828343866689	65.843	1.8785	65.63	64.646	66.525	-0.21327					161	46	4	0	0	0	1.0002	1	7516	7516		45.972	1.5951	1	1856800			90481	8022	62902	63005	100792	100792					-0.019822844848022214
YLDSIPPGQY	10	Unmodified	_YLDSIPPGQY_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.7822265625	2	576.782222	1151.54989	-0.73592	-0.00042447	0.86477	0.00049879	0.12885	7.4317E-05	576.7825486813514	65.842	1.8851	65.591	64.586	66.471	-0.25112					156	47	4	0	0	0	0.82838	1	7475	7475		58.782	11.125	1	1832600			90482	8022	62902	63005	100793	100793					-0.019822844848022214
YLDTYHEL	8	Unmodified	_YLDTYHEL_					0	0	0			REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	REV__CLTCL1|p.K1328Nfs*22|1|0.3|ENSG00000070371|chr22:19196546-19196546|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	528.2393188476562	2	527.248015	1052.48148	0.099165	5.2284E-05	1.9772	0.0010425	2.0763	0.0010947	527.2495322418031	68.97	0.44555	68.739	68.398	68.844	-0.23048					16	10	2	0	0	0	0.027866	1	7964	7964		42.474	1.9018	1	180470	+		90483	19502	62903	63006	100794	100794					-0.042665290646709764
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.810546875	2	597.811313	1193.60807	-0.31068	-0.00018573	-0.1252	-7.4849E-05	-0.43589	-0.00026058	597.8112259103827	70.821	0.58756	70.55	70.427	71.015	-0.27185					26	14	3	0	0	0	0.22902	1	8256	8256		85.161	16.676	1	799130			90484	5033	62904	63007	100795	100795					0.019013971604636026
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.8110961914062	2	597.811313	1193.60807	0.21803	0.00013034	0.44775	0.00026767	0.66578	0.00039801	597.8107820683205	70.683	0.9687	70.469	70.288	71.257	-0.21425					33	24	2	0	0	0	0.14181	1	8233	8233		101.25	31.625	1	750320			90485	5033	62904	63007	100796	100796					0.019013971604636026
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	597.811313	1193.60807	-0.68434	-0.0004091	0.53318	0.00031874	-0.15115	-9.036E-05	597.8114214505817	70.484	0.62892	70.484	70.281	70.909	0	-0.055229	0.00035312	NaN	101.25	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432790			90486	5033	62904	63007							0.019013971604636026
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	597.811313	1193.60807	0.25953	0.00015515	-0.43908	-0.00026249	-0.17955	-0.00010734	597.8106903380556	70.84	0.58788	70.547	70.368	70.956	-0.29291	0.0078765	-0.00080934	NaN	101.25	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367560			90487	5033	62904	63007							0.019013971604636026
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	597.811313	1193.60807	-0.7382	-0.0004413	0.82401	0.0004926	0.08581	5.1298E-05	597.811229411451	70.633	0.59049	70.645	70.424	71.015	0.012421	0.10605	0.00070083	NaN	101.25	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476340			90488	5033	62904	63007							0.019013971604636026
YLDWTIERV	9	Unmodified	_YLDWTIERV_					0	0	0		ENSG00000136636|ENST00000259154|KCTD3;nc|ENSG00000136636|Q9Y597-2|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	ENSG00000136636|ENST00000259154|KCTD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	597.811313	1193.60807	-0.59367	-0.0003549	0.59688	0.00035682	0.0032134	1.921E-06	597.8114872490164	70.797	0.52336	70.54	70.348	70.871	-0.25712	0.00093222	0.00042927	NaN	101.25	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515820			90489	5033	62904	63007							0.019013971604636026
YLDYDDTRY	9	Unmodified	_YLDYDDTRY_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	612.2645874023438	2	612.264393	1222.51423	-0.32826	-0.00020098	1.6525	0.0010118	1.3242	0.00081079	612.2646854371375	51.276	0.721	51.164	50.896	51.617	-0.11163					47	17	4	0	0	0	0.013337	2	5268	5258;5268		176.44	96.994	1	3036000			90490	9388	62905	63008	100797;100798	100798					-0.08812366732468035
YLDYDDTRY	9	Unmodified	_YLDYDDTRY_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	612.26416015625	2	612.264393	1222.51423	-1.2475	-0.00076382	2.2458	0.001375	0.9983	0.00061123	612.2651191120228	51.57	0.67445	51.293	51.078	51.752	-0.27643					43	17	4	0	0	0	0.079716	2	5297	5297;5311		117.81	49.024	1	3013400			90491	9388	62905	63008	100799;100800	100799					-0.08812366732468035
YLDYDDTRY	9	Unmodified	_YLDYDDTRY_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	612.263916015625	2	612.264393	1222.51423	0.84558	0.00051772	-0.24238	-0.0001484	0.6032	0.00036932	612.2638937172508	51.345	0.69197	51.165	50.945	51.637	-0.18071					34	17	4	0	0	0	0.01896	2	5261	5261;5272		150.36	90.243	1	2868800			90492	9388	62905	63008	100801;100802	100801					-0.08812366732468035
YLEDLPKV	8	Unmodified	_YLEDLPKV_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.25384521484375	2	488.771126	975.527698	-0.60468	-0.00029555	-3.4933	-0.0017074	-4.098	-0.002003	488.76921964311066	29.445	0.78695	29.448	29.129	29.916	0.0031357					59	19	4	0	0	0	0.027866	1	1763	1763		31.955	1.4512	1	3225700	+		90493	28233	62906	63009	100803	100803					0.038955358374209936
YLEDLPKV	8	Unmodified	_YLEDLPKV_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.25311279296875	2	488.771126	975.527698	-0.73214	-0.00035785	-3.3356	-0.0016303	-4.0677	-0.0019882	488.7693055861028	29.184	0.85874	29.263	28.904	29.763	0.078344					67	21	4	0	0	0	0.027866	1	1668	1668		31.955	0	1	3136700	+		90494	28233	62906	63009	100804	100804					0.038955358374209936
YLEEFITNI	9	Unmodified	_YLEEFITNI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	571.2923583984375	2	571.292422	1140.57029	-0.41412	-0.00023659	0.61518	0.00035145	0.20105	0.00011486	571.2926837935461	88.191	1.0078	88.191	87.844	88.852	0					64	23	4	0	0	0	0.053401	2	11117	11117;11130		127.46	42.301	1	1057400			90495	18350	62907	63010	100805;100806	100805					0.005628861749983116
YLEEFITNI	9	Unmodified	_YLEEFITNI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	571.2919921875	2	571.292422	1140.57029	0.51462	0.000294	-0.23834	-0.00013616	0.27628	0.00015784	571.292206534819	88.17	1.1252	88.143	87.776	88.901	-0.027664					64	26	4	0	0	0	0.03201	3	11082	11071;11082;11095		139.97	57.22	1	952550			90496	18350	62907	63010	100807;100808;100809	100808					0.005628861749983116
YLEEFITNI	9	Unmodified	_YLEEFITNI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	571.2918701171875	2	571.292422	1140.57029	-0.0057053	-3.2594E-06	0.26318	0.00015035	0.25747	0.00014709	571.292479628668	88.246	1.3041	88.265	87.832	89.136	0.018555					75	30	4	0	0	0	0.013065	2	11041	11041;11054		171.53	78.389	1	985360			90497	18350	62907	63010	100810;100811	100810					0.005628861749983116
YLEEFITNI	9	Unmodified	_YLEEFITNI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	571.292422	1140.57029	-0.22127	-0.00012641	0.54907	0.00031368	0.3278	0.00018727	571.2932556704743	88.259	0.77102	88.088	87.817	88.588	-0.17054	-0.073564	0.00038951	NaN	171.53	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356680			90498	18350	62907	63010							0.005628861749983116
YLEEFITNI	9	Unmodified	_YLEEFITNI_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	571.292422	1140.57029	0.11334	6.4748E-05	-1.5723	-0.00089825	-1.459	-0.00083351	571.2910009056872	88.26	0.61997	88.122	87.862	88.482	-0.13743	-0.039481	-0.0020344	NaN	171.53	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402490			90499	18350	62907	63010							0.005628861749983116
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	587.2908935546875	2	587.292953	1172.57135	-0.17372	-0.00010203	0.10135	5.9521E-05	-0.072374	-4.2505E-05	587.2928603601722	53.001	0.63042	52.743	52.482	53.112	-0.25838					38	15	4	0	0	0	0.12914	1	5521	5521		104.06	35.27	1	1141800			90500	6703	62908	63011	100812	100812					-0.008028994560845604
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	587.290771484375	2	587.292953	1172.57135	-0.60873	-0.0003575	0.382	0.00022434	-0.22674	-0.00013316	587.2930744933236	52.819	0.70712	52.63	52.389	53.096	-0.18981					45	17	4	0	0	0	0.062622	1	5497	5497		124.08	33.71	1	1211300			90501	6703	62908	63011	100813	100813					-0.008028994560845604
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	587.292953	1172.57135	-1.5109	-0.00088737	0.47924	0.00028145	-1.0317	-0.00060591	587.2929712830895	52.423	0.35941	52.423	52.236	52.595	0	-0.10466	0.00049211	NaN	124.08	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187270			90502	6703	62908	63011							-0.008028994560845604
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	587.292953	1172.57135	-0.66334	-0.00038957	-1.026	-0.00060258	-1.6894	-0.00099215	587.2925443461713	52.492	0.3597	52.345	52.209	52.569	-0.14723	-0.18202	-0.0012759	NaN	124.08	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168990			90503	6703	62908	63011							-0.008028994560845604
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	587.292953	1172.57135	0.6061	0.00035596	-2.8774	-0.0016899	-2.2713	-0.0013339	587.291269801708	52.321	0.43814	52.412	52.2	52.638	0.091938	-0.11475	-0.0034506	NaN	124.08	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177890			90504	6703	62908	63011							-0.008028994560845604
YLEETSIRY	9	Unmodified	_YLEETSIRY_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	587.292953	1172.57135	-0.47756	-0.00028047	0.51211	0.00030076	0.034553	2.0292E-05	587.2931192255757	52.738	0.71328	52.611	52.353	53.066	-0.12705	0.083576	0.00053072	NaN	124.08	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902840			90505	6703	62908	63011							-0.008028994560845604
YLELLSPVV	9	Unmodified	_YLELLSPVV_					0	0	0		ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	ENSG00000176715|ENST00000614302|ACSF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	517.31689453125	2	516.802426	1031.5903	-0.1705	-8.8116E-05	-3.054	-0.0015783	-3.2245	-0.0016664	516.8006533840584	21.933	0.52743	21.742	21.42	21.947	-0.19072					19	10	3	0	0	0	0.024436	1	706	706		38.806	6.8513	1	82423			90506	8663	62909	63012	100814	100814					0.07576681905629812
YLEQLHQLY	9	Unmodified	_YLEQLHQLY_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	603.810791015625	2	603.811313	1205.60807	-0.46951	-0.0002835	0.13277	8.0169E-05	-0.33674	-0.00020333	603.8112768225071	63.076	2.006	62.855	62.576	64.582	-0.22097					113	50	5	0	0	0	0.01388	4	7129	7094;7105;7117;7129		180.87	51.187	1	13746000			90507	7843	62910	63013	100815;100816;100817;100818	100818					0.013493971604930266
YLEQLHQLY	9	Unmodified	_YLEQLHQLY_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	603.81103515625	2	603.811313	1205.60807	-0.74995	-0.00045283	0.06443	3.8904E-05	-0.68552	-0.00041393	603.8113210736817	63.016	1.7866	62.833	62.573	64.359	-0.18386					113	46	5	0	0	0	0.013924	4	7126	7091;7114;7126;7140		209.84	40.865	1	13133000			90508	7843	62910	63013	100819;100820;100821;100822	100821					0.013493971604930266
YLEQLHQLY	9	Unmodified	_YLEQLHQLY_					0	0	0		nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-2|STAT3	nc|ENSG00000168610|P40763-2|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.8111572265625	2	603.811313	1205.60807	-0.066896	-4.0393E-05	-0.43534	-0.00026286	-0.50223	-0.00030325	603.8110317832021	63.171	1.7601	62.912	62.663	64.423	-0.25824					106	44	5	0	0	0	0.013924	4	7107	7098;7107;7132;7147		167.23	24.436	1	14387000			90509	7843	62910	63013	100823;100824;100825;100826	100824					0.013493971604930266
YLEQLRQQE	9	Unmodified	_YLEQLRQQE_					0	0	0		ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	603.8121337890625	2	603.809302	1205.60405	-0.74995	-0.00045283	3.3956	0.0020503	2.6456	0.0015974	603.8113210736817	63.016	1.7866	62.833	62.573	64.359	-0.18386					113	46	5	0	0	0	0.03666	1	7102	7102		136.27	8.8064	1	13133000			90510	3382	62911	63014	100827	100827					0.009473076667518399
YLEREDFFFY	10	Unmodified	_YLEREDFFFY_					0	0	0		nc|ENSG00000182979|Q13330-2|MTA1;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENST00000494026.1_1_14:105915673-105921005:+|nuORF;MTA1|p.A175Qfs*7|1|0.27|ENSG00000182979|chr14:105454282-105454282|G/-|frameshift_variant	nc|ENSG00000182979|Q13330-2|MTA1	nc|ENSG00000182979|Q13330-2|MTA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	477.80316162109375	3	476.887199	1427.63977	0.21563	0.00010283	2.5794	0.0012301	2.795	0.0013329	476.8876930730589	33.747	0.23471	33.519	33.442	33.677	-0.22753					6	5	2	0	0	0	0.03519	1	2426	2426		12.207	0	1	61662			90511	9184	62912	63015	100828	100828					-0.056946548762425664
YLERRASR	8	Unmodified	_YLERRASR_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	525.3050537109375	2	525.793789	1049.57303	-0.61573	-0.00032375	3.8732	0.0020365	3.2575	0.0017128	525.7957449076886	69.725	0.64576	69.725	69.383	70.029	0					34	15	3	0	0	0	0.027866	1	8396	8396		30.504	15.84	1	345510			90512	2025	62913	63016	100829	100829					0.050221991431726565
YLESVRPLL	9	Unmodified	_YLESVRPLL_					0	0	0		nc|ENSG00000205560|Q92523-2|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;ENSG00000205560|ENST00000312108|CPT1B	nc|ENSG00000205560|Q92523-2|CPT1B	nc|ENSG00000205560|Q92523-2|CPT1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.3165893554688	2	545.318774	1088.623	-0.40471	-0.0002207	-3.5746	-0.0019493	-3.9794	-0.00217	545.3167139319023	87.18	2.501	87.144	85.666	88.167	-0.035355					182	59	4	0	0	0	0.70186	1	10777	10777		45.952	0	1	3438300			90513	10434	62914	63017	100830	100830					0.08222889028479585
YLEWRTLD	8	Unmodified	_YLEWRTLD_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	548.8223266601562	2	548.277106	1094.53966	-0.46838	-0.0002568	-2.0247	-0.0011101	-2.4931	-0.0013669	548.2759657513075	57.265	0.62038	57.04	56.7	57.321	-0.2248					20	16	2	0	0	0	0.027866	1	6216	6216		29.15	5.6269	1	177720	+		90514	20348	62915	63018	100831	100831					-0.0038284741938241496
YLFHVQEV	8	Unmodified	_YLFHVQEV_					0	0	0		ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	517.7688598632812	2	517.768917	1033.52328	-0.84492	-0.00043747	1.7444	0.00090321	0.89951	0.00046574	517.769385677649	60.397	1.3827	60.397	59.951	61.334	0					99	33	5	0	0	0	0.29372	2	6953	6941;6953		114.59	36.642	1	3817600			90515	4909	62916	63019	100832;100833	100833					0.007860714145181191
YLFHVQEV	8	Unmodified	_YLFHVQEV_					0	0	0		ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	ENSG00000135587|ENST00000258052|SMPD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.768798828125	2	517.768917	1033.52328	-0.66631	-0.000345	0.8543	0.00044233	0.18798	9.7332E-05	517.769279883815	60.609	1.1303	60.395	60	61.131	-0.2134					89	29	5	0	0	0	0.59392	1	6950	6950		76.847	5.4687	1	3134800			90516	4909	62916	63019	100834	100834					0.007860714145181191
YLFNSVVNV	9	Unmodified	_YLFNSVVNV_					0	0	0		ENST00000477675.1_1_22:22055420-22058252:-|nuORF;nc|ENSG00000090238|P61236|YPEL3;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENSG00000166793|ENST00000300022|YPEL4;ENSG00000090238|ENST00000398841|YPEL3	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.779541015625	2	527.782025	1053.5495	-0.085507	-4.5129E-05	-3.9592	-0.0020896	-4.0447	-0.0021347	527.7788137160122	82.13	1.3322	81.946	81.6	82.932	-0.18448					52	30	3	0	0	0	0.10174	1	9901	9901		110.12	35.865	1	1011200			90517	1924	62917	63020	100835	100835					0.024863405860060084
YLFNSVVNV	9	Unmodified	_YLFNSVVNV_					0	0	0		ENST00000477675.1_1_22:22055420-22058252:-|nuORF;nc|ENSG00000090238|P61236|YPEL3;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENSG00000166793|ENST00000300022|YPEL4;ENSG00000090238|ENST00000398841|YPEL3	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	ENST00000477675.1_1_22:22055420-22058252:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.78173828125	2	527.782025	1053.5495	-0.76649	-0.00040454	-2.7223	-0.0014368	-3.4888	-0.0018413	527.7794413285708	82.075	0.86204	81.935	81.572	82.434	-0.14014					47	19	3	0	0	0	0.2508	1	9874	9874		82.241	15.811	1	1047600			90518	1924	62917	63020	100836	100836					0.024863405860060084
YLFPETEFI	9	Unmodified	_YLFPETEFI_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	579.7899780273438	2	579.789515	1157.56448	-1.1341	-0.00065752	0.99789	0.00057857	-0.13618	-7.8958E-05	579.7900444149958	94.336	1.6309	94.336	93.888	95.519	0					99	38	4	0	0	0	0.18276	1	12024	12024		92.191	23.706	1	1181800			90519	4862	62918	63021	100837	100837					-0.008002123366622982
YLFPETEFI	9	Unmodified	_YLFPETEFI_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	579.7899780273438	2	579.789515	1157.56448	-0.6585	-0.00038179	0.54883	0.00031821	-0.10967	-6.3585E-05	579.7897504171942	94.266	1.5608	94.266	93.951	95.512	-0.00022888					78	36	4	0	0	0	0.10076	1	11970	11970		110.34	28.032	1	1154500			90520	4862	62918	63021	100838	100838					-0.008002123366622982
YLFPETEFI	9	Unmodified	_YLFPETEFI_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	579.7898559570312	2	579.789515	1157.56448	-0.39672	-0.00023002	0.29859	0.00017312	-0.098136	-5.6898E-05	579.7896771403458	94.369	1.5946	94.375	93.89	95.485	0.0059814					112	37	4	0	0	0	0.0146	1	11936	11936		163.84	75.201	1	1242600			90521	4862	62918	63021	100839	100839					-0.008002123366622982
YLFPETEFI	9	Unmodified	_YLFPETEFI_					0	0	0		nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	nc|ENSG00000135111|O15119-3|TBX3	nc|ENSG00000135111|O15119-3|TBX3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	579.789515	1157.56448	-0.62425	-0.00036194	0.54805	0.00031775	-0.076204	-4.4182E-05	579.7897261410552	94.659	1.1034	94.512	93.956	95.059	-0.14771	0.10512	1.6444E-06	NaN	163.84	51	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374420			90522	4862	62918	63021							-0.008002123366622982
YLFPVVEP	8	Unmodified	_YLFPVVEP_					0	0	0			REV__nc|ENSG00000204209|Q9UER7-3|DAXX	REV__nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	482.2375793457031	2	482.262936	962.51132	0.10818	5.2173E-05	-3.8252	-0.0018448	-3.717	-0.0017926	482.2607451415419	70.278	0.49366	70.011	69.704	70.198	-0.26725					26	11	3	0	0	0	0.027866	1	8130	8130		13.775	0	1	447180	+		90523	28574	62919	63022	100840	100840					0.028564546713369054
YLFPVVEP	8	Unmodified	_YLFPVVEP_					0	0	0			REV__nc|ENSG00000204209|Q9UER7-3|DAXX	REV__nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	482.262936	962.51132	0.40927	0.00019738	-4.3348	-0.0020905	-3.9256	-0.0018932	482.26074148115606	69.854	0.48156	69.854	69.547	70.029	0	-0.085174	-0.00032938	NaN	19.36	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1007500	+		90524	28574	62919	63022							0.028564546713369054
YLFPVVEP	8	Unmodified	_YLFPVVEP_					0	0	0			REV__nc|ENSG00000204209|Q9UER7-3|DAXX	REV__nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	482.262936	962.51132	0.76127	0.00036713	-4.1462	-0.0019996	-3.385	-0.0016324	482.2605139679504	70.202	0.44461	69.909	69.593	70.038	-0.29291	-0.030203	-0.00014749	NaN	19.36	33	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	794730	+		90525	28574	62919	63022							0.028564546713369054
YLFPVVEP	8	Unmodified	_YLFPVVEP_					0	0	0			REV__nc|ENSG00000204209|Q9UER7-3|DAXX	REV__nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	482.262936	962.51132	-0.44643	-0.0002153	-3.7076	-0.001788	-4.154	-0.0020033	482.26104436067965	69.96	0.54884	69.972	69.585	70.134	0.012421	0.032996	0.00027562	NaN	19.36	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	974210	+		90526	28574	62919	63022							0.028564546713369054
YLFSEALNAA	10	Unmodified	_YLFSEALNAA_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-1	4	549.77685546875	2	549.776939	1097.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.353	1	78.098	77.598	78.598	-0.25471								0	0	0	0.17437	1	9335	9335		145.16	62.851	1				90527	10155	62920	63023	100841	100841					-0.005542671392504417
YLFSEALNAA	10	Unmodified	_YLFSEALNAA_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MSMS	OPSCC_40_ClassI_Rep-2	5	549.7767333984375	2	549.776939	1097.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.282	1	78.05	77.55	78.55	-0.23141								0	0	0	0.025374	1	9341	9341		158.07	81.3	1				90528	10155	62920	63023	100842	100842					-0.005542671392504417
YLFSEALNAA	10	Unmodified	_YLFSEALNAA_					0	0	0		LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	LRBA|p.N2376Ifs*6|1|0.16|ENSG00000198589|chr4:150415538-150415538|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	549.7767333984375	2	549.776939	1097.53933	-0.12382	-6.8071E-05	0.8928	0.00049084	0.76898	0.00042277	549.7767117924108	78.227	1.1151	78.071	77.741	78.856	-0.15591					68	25	5	0	0	0	0.0046684	1	9316	9316		180.93	109.05	1	1433600			90529	10155	62920	63023	100843	100843					-0.005542671392504417
YLFSGFQEA	9	Unmodified	_YLFSGFQEA_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA;ENST00000553911.1_2_14:23444960-23445931:-|nuORF	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	531.2506103515625	2	531.250557	1060.48656	0.24805	0.00013177	-0.22338	-0.00011867	0.024663	1.3102E-05	531.2502577333253	76.981	0.58562	76.713	76.38	76.966	-0.26807					35	13	3	0	0	0	0.020687	2	9140	9140;9159		148.99	63.627	1	897750			90530	4349	62921	63024	100844;100845	100844					-0.04126225202026035
YLFSGFQEA	9	Unmodified	_YLFSGFQEA_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA;ENST00000553911.1_2_14:23444960-23445931:-|nuORF	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.2504272460938	2	531.250557	1060.48656	-0.014253	-7.5721E-06	-0.030606	-1.626E-05	-0.04486	-2.3832E-05	531.2503600151788	76.971	0.67488	76.72	76.228	76.903	-0.25162					40	15	4	0	0	0	0.013293	3	9156	9147;9156;9169		176.09	55.218	1	969600			90531	4349	62921	63024	100846;100847;100848	100847					-0.04126225202026035
YLFSGFQEA	9	Unmodified	_YLFSGFQEA_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA;ENST00000553911.1_2_14:23444960-23445931:-|nuORF	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	531.2503662109375	2	531.250557	1060.48656	-0.3918	-0.00020815	0.31124	0.00016535	-0.08056	-4.2797E-05	531.2505206091266	76.817	0.59022	76.649	76.309	76.899	-0.16854					41	13	4	0	0	0	0.027092	3	9112	9112;9124;9138		143.89	46.414	1	857300			90532	4349	62921	63024	100849;100850;100851	100849					-0.04126225202026035
YLFSGFQEA	9	Unmodified	_YLFSGFQEA_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA;ENST00000553911.1_2_14:23444960-23445931:-|nuORF	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	531.250557	1060.48656	-0.39916	-0.00021205	0.78267	0.00041579	0.38351	0.00020374	531.2507711157226	76.763	0.56899	76.763	76.35	76.919	0	0.035999	0.00061381	NaN	176.09	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289740			90533	4349	62921	63024							-0.04126225202026035
YLFSGFQEA	9	Unmodified	_YLFSGFQEA_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA;ENST00000553911.1_2_14:23444960-23445931:-|nuORF	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	531.250557	1060.48656	-0.76755	-0.00040776	0.87378	0.0004642	0.10623	5.6437E-05	531.2506972982147	76.966	0.40955	76.738	76.444	76.853	-0.22843	0.010294	0.00071062	NaN	176.09	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400740			90534	4349	62921	63024							-0.04126225202026035
YLFSGFQEA	9	Unmodified	_YLFSGFQEA_					0	0	0		ENSG00000129474|ENST00000262713|AJUBA;ENST00000553911.1_2_14:23444960-23445931:-|nuORF	ENSG00000129474|ENST00000262713|AJUBA	ENSG00000129474|ENST00000262713|AJUBA	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	531.250557	1060.48656	0.030464	1.6184E-05	0.18867	0.00010023	0.21914	0.00011642	531.2503340485057	76.769	0.41011	76.782	76.49	76.9	0.013504	0.055043	-1.731E-05	NaN	176.09	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422080			90535	4349	62921	63024							-0.04126225202026035
YLFSSVPKP	9	Unmodified	_YLFSSVPKP_					0	0	0		ENST00000509626.1_1_5:34954007-34954816:+|nuORF	ENST00000509626.1_1_5:34954007-34954816:+|nuORF	ENST00000509626.1_1_5:34954007-34954816:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	520.264404296875	2	519.286943	1036.55933	-1.1616	-0.00060322	-1.6853	-0.00087518	-2.847	-0.0014784	519.285525445655	55.773	0.87519	55.871	55.484	56.359	0.098015					44	23	3	0	0	0	0.024323	1	6121	6121		44.117	16.235	1	946080			90536	15806	62922	63025	100852	100852					0.042515285913850676
YLGALLLLV	9	Unmodified	_YLGALLLLV_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	487.8180847167969	2	487.817879	973.621205	-0.22747	-0.00011096	1.5506	0.00075639	1.3231	0.00064542	487.8178462587236	103.92	1.81	103.91	103.44	105.25	-0.0032196					68	49	2	0	0	0	0.99355	1	13271	13271		21.702	0	1	194730	+		90537	25354	62923	63026	100853	100853					0.13333880010543453
YLGIVELLV	9	Unmodified	_YLGIVELLV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.8128356933594	2	509.812793	1017.61103	-0.2043	-0.00010415	0.35087	0.00017888	0.14657	7.4725E-05	509.81285264911406	104.22	1.1642	104.22	103.9	105.06	0					77	32	4	0	0	0	0.016588	5	13370	13358;13370;13382;13395;13408		153.88	85.4	1	1517900			90538	2258	62924	63027	100854;100855;100856;100857;100858	100855					0.10293272285298372
YLGIVELLV	9	Unmodified	_YLGIVELLV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.8126525878906	2	509.812793	1017.61103	-0.080983	-4.1286E-05	0.13865	7.0686E-05	0.057667	2.94E-05	509.8127050425874	104.21	1.0835	104.21	103.91	104.99	0.0031357					71	30	4	0	0	0	0.088511	5	13346	13323;13334;13346;13357;13377		114.59	40.611	1	1242200			90539	2258	62924	63027	100859;100860;100861;100862;100863	100861					0.10293272285298372
YLGIVELLV	9	Unmodified	_YLGIVELLV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8126220703125	2	509.812793	1017.61103	-0.02137	-1.0895E-05	0.045963	2.3432E-05	0.024593	1.2538E-05	509.81265950198656	104.28	1.2317	104.28	103.98	105.21	-0.0032196					92	35	4	0	0	0	0.088511	5	13302	13293;13302;13313;13327;13354		114.59	56.775	1	1365200			90540	2258	62924	63027	100864;100865;100866;100867;100868	100865					0.10293272285298372
YLGIVELLV	9	Unmodified	_YLGIVELLV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.8124084472656	2	509.812793	1017.61103	0.22238	0.00011337	-0.24155	-0.00012315	-0.019176	-9.7763E-06	509.812642031039	104.06	0.88844	103.93	103.44	104.33	-0.12561					31	14	3	0	0	0	0.29104	2	12952	12952;12963		76.847	32.73	1	137410			90541	2258	62924	63027	100869;100870	100869					0.10293272285298372
YLGIVELLV	9	Unmodified	_YLGIVELLV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	509.81195068359375	2	509.812793	1017.61103	-0.58974	-0.00030066	0.69035	0.00035195	0.10061	5.1293E-05	509.813129286555	104.14	0.45631	104.01	103.75	104.2	-0.12927					26	14	2	0	0	0	0.67308	1	12969	12969		47.916	10.887	1	156600			90542	2258	62924	63027	100871	100871					0.10293272285298372
YLGIVELLV	9	Unmodified	_YLGIVELLV_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555371.1_1_14:35871898-35872434:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.812793	1017.61103	0.26606	0.00013564	0.73523	0.00037483	1.0013	0.00051047	509.8124954976781	104.21	0.65655	104.04	103.77	104.42	-0.16791	-0.07642	0.00052318	NaN	153.88	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113260			90543	2258	62924	63027							0.10293272285298372
YLGLRDRYFIT	11	Unmodified	_YLGLRDRYFIT_					0	0	0			REV__ENST00000481597.5_1_3:50356335-50357944:-|nuORF	REV__ENST00000481597.5_1_3:50356335-50357944:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	473.7691650390625	3	472.925988	1415.75613	-0.73374	-0.00034701	-1.7884	-0.00084578	-2.5221	-0.0011928	473.2598407974247	30.006	0.29831	29.828	29.655	29.953	-0.17818					11	6	2	0	0	0	0.024821	1	1864	1864		19.263	6.8298	1	50262	+		90544	20370	62925	63028	100872	100872					0.06488708414326538
YLGMFHLL	8	Unmodified	_YLGMFHLL_					0	0	0		DAP3|p.S252Y|1|0.17|ENSG00000132676|chr1:155729278-155729278|C/A|missense_variant	DAP3|p.S252Y|1|0.17|ENSG00000132676|chr1:155729278-155729278|C/A|missense_variant	DAP3|p.S252Y|1|0.17|ENSG00000132676|chr1:155729278-155729278|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.26336669921875	2	497.264956	992.515359	-0.60669	-0.00030169	-3.7058	-0.0018427	-4.3125	-0.0021444	497.2629896396473	48.345	6.1114	48.248	45.849	51.96	-0.097553					376	164	4	0	0	0	0.69959	2	4933	4753;4933		67.327	8.5452	1	6694800			90545	622	62926	63029	100873;100874	100874					0.018802208934062037
YLGMFHLL	8	Unmodified	_YLGMFHLL_					0	0	0		DAP3|p.S252Y|1|0.17|ENSG00000132676|chr1:155729278-155729278|C/A|missense_variant	DAP3|p.S252Y|1|0.17|ENSG00000132676|chr1:155729278-155729278|C/A|missense_variant	DAP3|p.S252Y|1|0.17|ENSG00000132676|chr1:155729278-155729278|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2630615234375	2	497.264956	992.515359	-0.17985	-8.9431E-05	-4.339	-0.0021577	-4.5189	-0.0022471	497.26276530146424	48.49	5.7611	48.308	45.839	51.6	-0.18206					294	155	2	0	0	0	0.8525	1	4942	4942		54.895	1.5431	1	7142700			90546	622	62926	63029	100875	100875					0.018802208934062037
YLGNINPQM	9	Oxidation (M)	_YLGNINPQM(Oxidation (M))_		YLGNINPQM(1)		YLGNINPQM(91)	0	0	1		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.2550048828125	2	533.255317	1064.49608	-0.87055	-0.00046423	0.74011	0.00039467	-0.13044	-6.9558E-05	533.2555697474653	52.784	1.3352	52.784	52.391	53.726	0					88	35	5	0	0	0	0.18915	2	5677	5667;5677		90.777	13.82	1	4120900			90547	18451	62927	63030	100876;100877	100877		579			-0.03358780188182209
YLGNINPQM	9	Oxidation (M)	_YLGNINPQM(Oxidation (M))_		YLGNINPQM(1)		YLGNINPQM(91)	0	0	1		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	533.2551879882812	2	533.255317	1064.49608	-0.46192	-0.00024632	0.35689	0.00019031	-0.10503	-5.6009E-05	533.2553852975732	52.897	1.2366	52.75	52.366	53.602	-0.14723					88	32	4	0	0	0	0.18915	2	5672	5662;5672		90.777	22.292	1	4265700			90548	18451	62927	63030	100878;100879	100879		579			-0.03358780188182209
YLGNINPQM	9	Oxidation (M)	_YLGNINPQM(Oxidation (M))_		YLGNINPQM(1)		YLGNINPQM(94)	0	0	1		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	533.2549438476562	2	533.255317	1064.49608	-0.22367	-0.00011927	0.031974	1.705E-05	-0.19169	-0.00010222	533.2552024800387	52.662	1.1483	52.754	52.404	53.552	0.091942					85	30	4	0	0	0	0.17455	1	5585	5585		94.006	22.129	1	5029700			90549	18451	62927	63030	100880	100880		579			-0.03358780188182209
YLGNINPQM	9	Oxidation (M)	_YLGNINPQM(Oxidation (M))_					0	0	1		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	533.255317	1064.49608	0.044635	2.3802E-05	-0.43099	-0.00022983	-0.38635	-0.00020602	533.2551210644696	53.045	0.43216	52.918	52.672	53.104	-0.12706	0.076794	-0.0007567	NaN	94.006	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195900			90550	18451	62927	63030				579			-0.03358780188182209
YLGNINPQM	9	Oxidation (M)	_YLGNINPQM(Oxidation (M))_					0	0	1		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	533.255317	1064.49608	-0.089584	-4.7771E-05	-1.8083	-0.00096429	-1.8979	-0.0010121	533.2542705923092	53.226	0.50142	52.968	52.723	53.224	-0.25838	0.12685	-0.0022256	NaN	94.006	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325700			90551	18451	62927	63030				579			-0.03358780188182209
YLGNINPQM	9	Oxidation (M)	_YLGNINPQM(Oxidation (M))_					0	0	1		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	533.255317	1064.49608	-0.27068	-0.00014434	-0.61676	-0.00032889	-0.88744	-0.00047323	533.2549269624036	53.064	0.49931	52.874	52.672	53.171	-0.18982	0.032621	-0.00095483	NaN	94.006	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396110			90552	18451	62927	63030				579			-0.03358780188182209
YLGPFRLSLK	10	Unmodified	_YLGPFRLSLK_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MSMS	OPSCC_39_ClassI_Rep-2	2	597.35693359375	2	597.355691	1192.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.006	1	90.993	90.493	91.493	-0.012383								0	0	0	0.75365	1	11483	11483		27.882	0	1		+		90553	20687	62928	63031	100881	100881					0.10818857190793096
YLGVACAWLL	10	Unmodified	_YLGVACAWLL_					0	0	0			REV__ENSG00000130748|ENST00000253047|TMEM160	REV__ENSG00000130748|ENST00000253047|TMEM160	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	553.8057250976562	2	554.79662	1107.57869	0.33603	0.00018643	-4.0917	-0.00227	-3.7557	-0.0020836	554.7942315050421	68.315	0.68581	68.084	67.794	68.48	-0.23048					34	16	3	0	0	0	0.03519	1	7862	7862		35.201	9.7505	1	1243600	+		90554	23147	62929	63032	100882	100882					0.029201616106320216
YLGVVRLGR	9	Unmodified	_YLGVVRLGR_					0	0	0			REV__nc|ENSG00000105137|Q6ZW31-2|SYDE1	REV__nc|ENSG00000105137|Q6ZW31-2|SYDE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.7855224609375	2	516.819276	1031.624	-0.74549	-0.00038528	-0.38651	-0.00019976	-1.132	-0.00058504	516.8191885836295	44.812	0.3527	44.601	44.362	44.715	-0.21109					13	8	2	0	0	0	0.024541	1	4175	4175		17.365	0	1	115110	+		90555	21496	62930	63033	100883	100883					0.10945148188034182
YLHIPPPQL	9	Unmodified	_YLHIPPPQL_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.308837890625	2	539.30821	1076.60187	-0.19958	-0.00010764	0.038304	2.0658E-05	-0.16128	-8.6978E-05	539.308111865472	64.312	1.4475	64.312	63.845	65.292	0					77	39	4	0	0	0	0.20304	1	7580	7580		88.643	16.765	1	2188400			90556	2792	62931	63034	100884	100884					0.066629237196139
YLHIPPPQL	9	Unmodified	_YLHIPPPQL_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	539.3090209960938	2	539.30821	1076.60187	-1.3701	-0.00073892	1.3879	0.00074849	0.017748	9.5718E-06	539.3087899055121	64.6	1.5088	64.337	63.864	65.372	-0.2626					79	40	4	0	0	0	0.22754	2	7585	7585;7597		85.359	28.638	1	1956000			90557	2792	62931	63034	100885;100886	100885					0.066629237196139
YLHIPPPQL	9	Unmodified	_YLHIPPPQL_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	539.3081665039062	2	539.30821	1076.60187	-0.34346	-0.00018523	0.056945	3.0711E-05	-0.28652	-0.00015452	539.3082022748229	64.405	1.5637	64.451	63.867	65.43	0.045502					77	42	3	0	0	0	0.31247	2	7507	7495;7507		73.975	14.044	1	2082900			90558	2792	62931	63034	100887;100888	100888					0.066629237196139
YLHLVGVPQ	9	Unmodified	_YLHLVGVPQ_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.7495727539062	2	513.292559	1024.57057	-0.33298	-0.00017091	-4.1464	-0.0021283	-4.4794	-0.0022992	513.290361282908	41.483	0.62322	41.255	40.927	41.55	-0.2278					22	15	2	0	0	0	0.024412	1	3646	3646		31.955	1.6371	1	329200			90559	5866	62932	63035	100889	100889					0.05926350685513171
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	500.7640075683594	2	500.764166	999.513779	-0.065504	-3.2802E-05	-0.3546	-0.00017757	-0.42011	-0.00021037	500.76382753738346	42.863	0.906	42.863	42.569	43.475	0					59	24	4	0	0	0	0.22754	1	3975	3975		85.359	16.573	1	4616900			90560	6563	62933	63036	100890	100890					0.014003031290144463
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7638854980469	2	500.764166	999.513779	-0.1827	-9.1491E-05	-0.29787	-0.00014916	-0.48057	-0.00024065	500.76391553001366	43.041	0.68979	42.902	42.631	43.321	-0.13929					49	18	4	0	0	0	0.22754	1	3992	3992		85.359	21.152	1	4757300			90561	6563	62933	63036	100891	100891					0.014003031290144463
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7640075683594	2	500.764166	999.513779	0.417	0.00020882	-0.7361	-0.00036861	-0.31909	-0.00015979	500.76363510717175	42.961	0.84032	42.991	42.609	43.45	0.030827					54	22	4	0	0	0	0.15889	2	3930	3930;3944		97.473	23.218	1	5106200			90562	6563	62933	63036	100892;100893	100892					0.014003031290144463
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	500.7699279785156	2	500.764166	999.513779	-0.053481	-2.6781E-05	0.3475	0.00017402	0.29402	0.00014723	500.76404726014965	43.025	0.5649	42.913	42.654	43.218	-0.11253					37	13	3	0	0	0	0.40179	1	3920	3920		65.803	19.851	1	1628700			90563	6563	62933	63036	100894	100894					0.014003031290144463
YLHNQGIGV	9	Unmodified	_YLHNQGIGV_					0	0	0		ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	ENSG00000156970|ENST00000287598|BUB1B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	500.7684020996094	2	500.764166	999.513779	-0.39862	-0.00019961	0.50703	0.0002539	0.10841	5.4286E-05	500.76414389890056	43.189	0.71258	42.952	42.639	43.351	-0.23736					46	18	3	0	0	0	0.52323	1	3937	3937		57.811	6.4758	1	1425100			90564	6563	62933	63036	100895	100895					0.014003031290144463
YLHPQQFDCE	10	Unmodified	_YLHPQQFDCE_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	640.2174682617188	2	640.274238	1278.53392	0.26432	0.00016924	4.0257	0.0025775	4.29	0.0027468	640.2764270241858	72.103	0.2047	71.841	71.679	71.884	-0.262					5	4	2	0	0	0	0.03519	1	8435	8435		84.916	7.5979	1	34766			90565	10716	62934	63037	100896	100896					-0.09420313993337004
YLHSDPLR	8	Unmodified	_YLHSDPLR_					0	0	0			REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	REV__ENST00000556961.1_1_14:92336310-92336571:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.7636413574219	2	500.764166	999.513779	-0.1827	-9.1491E-05	-0.29787	-0.00014916	-0.48057	-0.00024065	500.76391553001366	43.041	0.68979	42.902	42.631	43.321	-0.13929					49	18	4	0	0	0	0.71833	1	3981	3981		65.803	2.4969	1	4757300	+		90566	35055	62935	63038	100897	100897					0.014003031290030776
YLHSQVVSV	9	Unmodified	_YLHSQVVSV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2786865234375	2	516.279649	1030.54475	-0.62583	-0.0003231	0.31787	0.00016411	-0.30796	-0.00015899	516.2796556847585	46.58	0.76335	46.632	46.408	47.171	0.051395					31	20	2	0	0	0	0.17822	1	4568	4568		93.195	13.483	1	1987900			90567	10321	62936	63039	100898	100898					0.030694564432451443
YLHVGMDIL	9	Unmodified	_YLHVGMDIL_					0	0	0		nc|ENSG00000134109|Q92611-2|EDEM1;ENSG00000134109|ENST00000256497|EDEM1	nc|ENSG00000134109|Q92611-2|EDEM1	nc|ENSG00000134109|Q92611-2|EDEM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.265869140625	2	530.778428	1059.5423	2.8806	0.001529	-0.80656	-0.0004281	2.0741	0.0011009	530.7778843686642	17.068	0.40811	17.068	16.842	17.25	0					12	9	2	0	0	0	0.024541	1	134	134		13.775	0	1	35321			90568	4756	62937	63040	100899	100899					0.014912847139157748
YLHYWNVT	8	Unmodified	_YLHYWNVT_					0	0	0			REV__L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|58|3|anti-sense	REV__L1MDa_dup2979|chr7:144182489-144183245:+|1.110541677985207|0.1455468842828891|2.93|511.0|58|3|anti-sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3236083984375	2	548.266542	1094.51853	-1.2942	-0.00070957	-1.7181	-0.000942	-3.0123	-0.0016516	548.2646867997482	75.168	0.90549	75.168	74.717	75.622	0					60	23	4	0	0	0	0.027866	1	9198	9198		35.201	0	1	1518200	+		90569	36206	62938	63041	100900	100900					-0.024948127282414134
YLIALVVGAL	10	Unmodified	_YLIALVVGAL_					0	0	0		nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;ENST00000553041.5_1_12:96414526-96429297:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF	nc|ENSG00000111144|P09960-4|LTA4H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	517.2401733398438	2	516.328611	1030.64267	0.086844	4.484E-05	-0.35939	-0.00018556	-0.27255	-0.00014072	516.3284043902751	78.447	0.68744	78.291	77.914	78.601	-0.15591					26	15	2	0	0	0	0.03519	1	9375	9375		26.796	0	1	111430			90570	3089;16559	62939	63042	100901	100901					0.1285726503922433
YLICKFIYEG	10	Carbamidomethyl (C)	_YLIC(Carbamidomethyl (C))KFIYEG_	YLIC(1)KFIYEG		YLIC(55)KFIYEG		0	1	0			REV__ENST00000469980.1_1_2:170336021-170338908:+|nuORF	REV__ENST00000469980.1_1_2:170336021-170338908:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	435.8913879394531	3	435.889775	1304.6475	-0.43933	-0.0001915	3.3048	0.0014405	2.8655	0.001249	435.8912150777191	65.206	1.3061	64.971	64.568	65.874	-0.2345					81	31	4	0	0	0	0.88978	1	7454	7454		54.722	7.4947	1	5214000	+		90571	33143	62940	63043	100902	100902	438				0.007357811196925468
YLICVAIIM	9	Unmodified	_YLICVAIIM_					0	0	0			REV__ENST00000523831.1_1_8:101513253-101513298:+|nuORF	REV__ENST00000523831.1_1_8:101513253-101513298:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.7896118164062	2	519.789949	1037.56535	-0.85927	-0.00044664	-0.13289	-6.9075E-05	-0.99216	-0.00051571	519.7898574441391	80.103	0.88266	80.124	79.771	80.654	0.021446					68	20	5	0	0	0	0.65391	1	9886	9886		49.211	1.2952	1	5184900	+		90572	34363	62941	63044	100903	100903					0.04806587507027871
YLIDEPSAYL	10	Unmodified	_YLIDEPSAYL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	592.2980346679688	2	592.297704	1182.58086	0.90923	0.00053853	-0.86797	-0.0005141	0.04126	2.4438E-05	592.2971079397811	82.657	0.85719	82.547	82.21	83.067	-0.11006					57	19	5	0	0	0	0.47726	1	10285	10285		90.777	7.4895	1	1465500			90573	7228	62942	63045	100904	100904					-0.003131311705601547
YLIDEPSAYL	10	Unmodified	_YLIDEPSAYL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	592.2976684570312	2	592.297704	1182.58086	-0.18882	-0.00011184	0.27917	0.00016535	0.090356	5.3518E-05	592.2977554189866	82.475	1.1517	82.501	82.147	83.299	0.025719					64	26	5	0	0	0	0.033445	1	10220	10220		152.47	72.531	1	1540200			90574	7228	62942	63045	100905	100905					-0.003131311705601547
YLIDEPSAYL	10	Unmodified	_YLIDEPSAYL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.2976684570312	2	592.297704	1182.58086	-0.52902	-0.00031334	-0.22039	-0.00013053	-0.74941	-0.00044387	592.2976383160484	82.601	0.99159	82.421	82.201	83.192	-0.18079					47	22	5	0	0	0	0.82838	1	9961	9961		58.782	18.004	1	939130			90575	7228	62942	63045	100906	100906					-0.003131311705601547
YLIDEPSAYL	10	Unmodified	_YLIDEPSAYL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.2976684570312	2	592.297704	1182.58086	-1.0645	-0.00063049	-0.15969	-9.4583E-05	-1.2242	-0.00072508	592.2979877032454	82.596	0.99365	82.456	82.173	83.166	-0.14014					46	22	3	0	0	0	0.96965	1	9939	9939		49.442	8.6634	1	1010300			90576	7228	62942	63045	100907	100907					-0.003131311705601547
YLIDEPSAYL	10	Unmodified	_YLIDEPSAYL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	592.297704	1182.58086	-1.5922	-0.00094306	1.6289	0.00096482	0.036742	2.1762E-05	592.29860375979	82.564	1.1979	82.564	82.237	83.435	0	0.1454	0.0018974	NaN	152.47	69	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1484100			90577	7228	62942	63045							-0.003131311705601547
YLIDEPSAYL	10	Unmodified	_YLIDEPSAYL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	592.297704	1182.58086	-0.026505	-1.5699E-05	-0.79161	-0.00046887	-0.81811	-0.00048457	592.2974174744552	82.592	1.0828	82.372	82.086	83.169	-0.22015	-0.046794	-0.00097	NaN	152.47	48	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	977950			90578	7228	62942	63045							-0.003131311705601547
YLIDEPSAYL	10	Unmodified	_YLIDEPSAYL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	592.297704	1182.58086	-1.3835	-0.00081947	-5.4559	-0.0032315	-6.8395	-0.004051	592.7970651964542	82.248	0.17344	82.108	81.956	82.13	-0.14014	-0.3108	-0.0064953	NaN	152.47	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32182			90579	7228	62942	63045							-0.003131311705601547
YLIELIDRV	9	Unmodified	_YLIELIDRV_					0	0	0		nc|ENSG00000151694|P78536-2|ADAM17;ENSG00000151694|ENST00000310823|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	567.3311157226562	2	567.331882	1132.64921	-0.78974	-0.00044804	0.13689	7.766E-05	-0.65285	-0.00037038	567.332136813072	79.032	1.1281	79.032	78.616	79.744	0					67	26	3	0	0	0	0.11727	3	9785	9785;9797;9810		106.68	40.254	1	877990			90580	6223	62943	63046	100908;100909;100910	100908					0.08819158199935373
YLIELIDRV	9	Unmodified	_YLIELIDRV_					0	0	0		nc|ENSG00000151694|P78536-2|ADAM17;ENSG00000151694|ENST00000310823|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.3321533203125	2	567.331882	1132.64921	-0.69686	-0.00039535	0.087836	4.9832E-05	-0.60902	-0.00034552	567.332014186288	79.113	1.2538	78.941	78.568	79.822	-0.17226					72	29	3	0	0	0	0.17845	2	9769	9769;9785		93.143	23.516	1	923410			90581	6223	62943	63046	100911;100912	100911					0.08819158199935373
YLIELIDRV	9	Unmodified	_YLIELIDRV_					0	0	0		nc|ENSG00000151694|P78536-2|ADAM17;ENSG00000151694|ENST00000310823|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	nc|ENSG00000151694|P78536-2|ADAM17	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3319091796875	2	567.331882	1132.64921	-0.83477	-0.00047359	0.021262	1.2062E-05	-0.81351	-0.00046153	567.3321227883615	79.014	1.0332	79.033	78.693	79.726	0.018669					63	24	3	0	0	0	0.15388	1	9710	9710		98.582	32.153	1	923940			90582	6223	62943	63046	100913	100913					0.08819158199935373
YLIEPDVEL	9	Unmodified	_YLIEPDVEL_					0	0	0		ENST00000486832.1_1_3:137958292-137964088:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ARMC8|p.P430Lfs*2|1|0.06|ENSG00000114098|chr3:138264201-138264201|C/-|frameshift_variant;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	545.7864990234375	2	545.786973	1089.55939	-1.3411	-0.00073193	0.94721	0.00051698	-0.39385	-0.00021496	545.7874980938768	83.685	1.1112	83.685	83.393	84.504	0					60	25	4	0	0	0	0.040175	3	10474	10462;10474;10486		133.47	42.692	1	2344600			90583	132	62944	63047	100914;100915;100916	100915					0.01819483800704802
YLIEPDVEL	9	Unmodified	_YLIEPDVEL_					0	0	0		ENST00000486832.1_1_3:137958292-137964088:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ARMC8|p.P430Lfs*2|1|0.06|ENSG00000114098|chr3:138264201-138264201|C/-|frameshift_variant;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	545.7868041992188	2	545.786973	1089.55939	-1.2869	-0.00070235	1.1876	0.0006482	-0.099219	-5.4153E-05	545.7875040174126	83.708	0.86028	83.617	83.427	84.287	-0.090454					38	19	3	0	0	0	0.028181	3	10443	10432;10443;10455		143.02	36.604	1	2321100			90584	132	62944	63047	100917;100918;100919	100918					0.01819483800704802
YLIEPDVEL	9	Unmodified	_YLIEPDVEL_					0	0	0		ENST00000486832.1_1_3:137958292-137964088:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ARMC8|p.P430Lfs*2|1|0.06|ENSG00000114098|chr3:138264201-138264201|C/-|frameshift_variant;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.7871704101562	2	545.786973	1089.55939	-1.5137	-0.00082617	1.3424	0.00073265	-0.17135	-9.3519E-05	545.7875856284193	83.636	1.3209	83.662	83.384	84.705	0.026558					53	30	3	0	0	0	0.0146	3	10373	10373;10384;10397		163.84	53.507	1	2709700			90585	132	62944	63047	100920;100921;100922	100920					0.01819483800704802
YLIEPDVEL	9	Unmodified	_YLIEPDVEL_					0	0	0		ENST00000486832.1_1_3:137958292-137964088:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ARMC8|p.P430Lfs*2|1|0.06|ENSG00000114098|chr3:138264201-138264201|C/-|frameshift_variant;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.7864379882812	2	545.786973	1089.55939	0.39071	0.00021325	-0.39533	-0.00021576	-0.0046105	-2.5163E-06	545.7867190381478	83.733	0.76491	83.521	83.178	83.943	-0.21159					40	17	3	0	0	0	0.13494	2	10112	10102;10112		102.77	28.686	1	745670			90586	132	62944	63047	100923;100924	100924					0.01819483800704802
YLIEPDVEL	9	Unmodified	_YLIEPDVEL_					0	0	0		ENST00000486832.1_1_3:137958292-137964088:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ARMC8|p.P430Lfs*2|1|0.06|ENSG00000114098|chr3:138264201-138264201|C/-|frameshift_variant;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.7870483398438	2	545.786973	1089.55939	0.38844	0.000212	-0.24758	-0.00013513	0.14086	7.6879E-05	545.7867010834017	83.719	1.0216	83.549	83.204	84.225	-0.16915					43	23	3	0	0	0	0.13494	2	10111	10111;10122		102.77	25.999	1	840420			90587	132	62944	63047	100925;100926	100925					0.01819483800704802
YLIEPDVEL	9	Unmodified	_YLIEPDVEL_					0	0	0		ENST00000486832.1_1_3:137958292-137964088:+|nuORF;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ARMC8|p.P430Lfs*2|1|0.06|ENSG00000114098|chr3:138264201-138264201|C/-|frameshift_variant;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	ENST00000486832.1_1_3:137958292-137964088:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.786865234375	2	545.786973	1089.55939	-0.20358	-0.00011111	0.19449	0.00010615	-0.009087	-4.9596E-06	545.7869771944369	83.717	0.93898	83.579	83.255	84.194	-0.1386					44	21	3	0	0	0	0.11848	2	10100	10090;10100		106.42	32.44	1	859700			90588	132	62944	63047	100927;100928	100928					0.01819483800704802
YLIKCAPGD	9	Unmodified	_YLIKCAPGD_					0	0	0			REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	489.780029296875	2	490.249503	978.484453	-0.38927	-0.00019084	-2.5032	-0.0012272	-2.8924	-0.001418	490.24783460770294	22.167	0.61726	22.092	21.56	22.177	-0.075296					17	12	2	0	0	0	0.024487	1	733	733		11.511	0	1	18078	+		90589	35857	62945	63048	100929	100929					-0.00564977211513451
YLIKCRTK	8	Unmodified	_YLIKCRTK_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ABCA5|p.D181Rfs*21|1|0.18|ENSG00000154265|chr17:69308298-69308299|-/A|frameshift_variant	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7693481445312	2	512.802237	1023.58992	-0.11399	-5.8453E-05	3.1475	0.0016141	3.0335	0.0015556	512.8037431943488	38.977	0.34664	38.751	38.562	38.909	-0.2257					11	9	2	0	0	0	0.027866	1	3221	3221		53.351	9.2347	1	177020			90590	6397	62946	63049	100930	100930					0.0790698370476548
YLILENRES	9	Unmodified	_YLILENRES_					0	0	0			REV__ENST00000472401.5_1_21:44073924-44119122:+|nuORF	REV__ENST00000472401.5_1_21:44073924-44119122:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	569.2826538085938	2	568.800946	1135.58734	0.32194	0.00018312	1.5681	0.00089192	1.89	0.001075	568.8027225632056	81.525	1.0925	81.332	81.009	82.101	-0.19333					65	25	4	0	0	0	0.023635	1	9819	9819		76.774	21.27	1	3368200	+		90591	33165	62947	63050	100931	100931					0.02496806780800398
YLILFNYY	8	Unmodified	_YLILFNYY_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	555.2263793945312	2	554.789318	1107.56408	0.0094826	5.2608E-06	-2.5513	-0.0014155	-2.5419	-0.0014102	554.7875097606164	80.685	1.0561	80.447	80.123	81.179	-0.23784					66	25	4	0	0	0	0.027866	1	9641	9641		46.766	12.594	1	988860			90592	2849	62948	63051	100932	100932					0.014604127341499407
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	574.819091796875	2	574.819138	1147.62372	-1.0136	-0.00058261	0.16989	9.7655E-05	-0.84366	-0.00048495	574.8192365912915	68.35	1.9683	68.35	67.947	69.915	0					138	50	5	0	0	0	0.012922	6	8212	8167;8177;8189;8201;8212;8226		172.25	74.36	1	12062000			90593	6240;18383	62949	63052	100933;100934;100935;100936;100937;100938	100937					0.055816836775193224
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	574.8192749023438	2	574.819138	1147.62372	0.24384	0.00014016	-0.93066	-0.00053496	-0.68683	-0.0003948	574.8185730404242	68.692	1.8625	68.4	67.974	69.836	-0.29267					122	47	5	0	0	0	0.012922	6	8197	8185;8197;8208;8220;8232;8247		172.25	73.619	1	10405000			90594	6240;18383	62949	63052	100939;100940;100941;100942;100943;100944	100940					0.055816836775193224
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	574.8192138671875	2	574.819138	1147.62372	-0.17108	-9.8341E-05	-0.45905	-0.00026387	-0.63013	-0.00036221	574.818872607272	68.427	1.7999	68.446	68.118	69.918	0.018921					130	46	6	0	0	0	0.012922	6	8103	8103;8113;8124;8136;8148;8163		181.41	79.806	1	12189000			90595	6240;18383	62949	63052	100945;100946;100947;100948;100949;100950	100945					0.055816836775193224
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.8192749023438	2	574.819138	1147.62372	-0.69545	-0.00039976	0.40933	0.00023529	-0.28612	-0.00016447	574.819386311481	68.625	1.2302	68.364	68.103	69.333	-0.26166					82	29	4	0	0	0	0.012922	2	7936	7925;7936		185.72	78.711	1	4381100			90596	6240;18383	62949	63052	100951;100952	100952					0.055816836775193224
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.81884765625	2	574.819138	1147.62372	0.1546	8.8867E-05	-0.33014	-0.00018977	-0.17554	-0.0001009	574.8189046459397	68.612	1.1322	68.369	68.072	69.204	-0.24277					64	27	3	0	0	0	0.016542	2	7926	7926;7936		154.12	56.416	1	5036600			90597	6240;18383	62949	63052	100953;100954	100953					0.055816836775193224
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.8187866210938	2	574.819138	1147.62372	0.14935	8.5851E-05	-0.4948	-0.00028442	-0.34545	-0.00019857	574.818888532315	68.606	1.219	68.376	68.039	69.258	-0.23048					78	29	4	0	0	0	0.015512	2	7915	7915;7924		159.28	74.115	1	4978200			90598	6240;18383	62949	63052	100955;100956	100955					0.055816836775193224
YLINEIDRI	9	Unmodified	_YLINEIDRI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-8|DST;DST|p.V3516Kfs*9|1|0.12|ENSG00000151914|chr6:56529727-56529728|-/TTTTT|frameshift_variant;DST|p.F3130Wfs*18|1|0.06|ENSG00000151914|chr6:56552632-56552633|-/AATGCCC|frameshift_variant;DST|p.I2444Mfs*11|1|0.16|ENSG00000151914|chr6:56561500-56561515|TTCATAACCATGACTT/-|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.Q1306Ifs*3|1|0.09|ENSG00000151914|chr6:56629295-56629296|TG/-|frameshift_variant;DST|p.Y1207*|1|0.3|ENSG00000151914|chr6:56631216-56631219|TATG/-|frameshift_variant	nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST	ENSG00000151914|ENST00000680361|DST	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	574.819138	1147.62372	-0.14424	-8.2912E-05	-0.95358	-0.00054814	-1.0978	-0.00063105	575.3200614206203	68.004	0.1508	68.023	67.967	68.118	0.018913	-0.23429	-0.00042393	NaN	172.25	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60262			90599	6240;18383	62949	63052							0.055816836775193224
YLIPDINVAL	10	Unmodified	_YLIPDINVAL_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.8253173828125	2	565.826432	1129.63831	0.058132	3.2892E-05	-0.089438	-5.0606E-05	-0.031307	-1.7714E-05	565.8262347718664	101.06	0.99853	100.89	100.74	101.74	-0.17178					35	22	3	0	0	0	0.88896	1	12524	12524		54.776	3.4409	1	390680	+		90600	23290	62950	63053	100957	100957					0.0786775582566861
YLIPLLERL	9	Unmodified	_YLIPLLERL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	565.352783203125	2	565.352617	1128.69068	-0.040086	-2.2663E-05	-0.059749	-3.3779E-05	-0.099835	-5.6442E-05	565.3524840012765	87.057	1.1797	86.87	86.429	87.608	-0.18695					81	27	4	0	0	0	0.17845	3	10570	10558;10570;10582		93.143	27.231	1	1761300			90601	3038	62951	63054	100958;100959;100960	100959					0.13148338959263128
YLIPLLERL	9	Unmodified	_YLIPLLERL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.3526000976562	2	565.352617	1128.69068	0.62298	0.0003522	-0.70808	-0.00040031	-0.0851	-4.8111E-05	565.3521001916072	86.934	1.1466	86.792	86.364	87.51	-0.14217					79	26	4	0	0	0	0.30449	1	10577	10577		75.043	23.851	1	1269100			90602	3038	62951	63054	100961	100961					0.13148338959263128
YLIPLLERL	9	Unmodified	_YLIPLLERL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	565.352294921875	2	565.352617	1128.69068	-0.02066	-1.168E-05	-0.058604	-3.3132E-05	-0.079264	-4.4812E-05	565.3524443204351	86.988	1.1889	86.85	86.356	87.545	-0.13734					74	27	4	0	0	0	0.2508	3	10569	10546;10558;10569		82.241	23.459	1	1361600			90603	3038	62951	63054	100962;100963;100964	100964					0.13148338959263128
YLIQMLKKA	9	Unmodified	_YLIQMLKKA_					0	0	0		ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	ENSG00000112796|ENST00000371383|ENPP5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	553.8302001953125	2	554.33337	1106.65219	0.051619	2.8614E-05	-3.3403	-0.0018517	-3.2887	-0.0018231	554.3315124271052	86.332	0.87241	86.145	85.644	86.516	-0.18696					33	19	2	0	0	0	0.024412	1	10474	10474		40.573	7.7602	1	255570			90604	3241	62952	63055	100965	100965					0.10312710053108276
YLIWMLSN	8	Unmodified	_YLIWMLSN_					0	0	0			REV__nc|ENSG00000019186|Q07973-3|CYP24A1	REV__nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	519.8208618164062	2	520.267696	1038.52084	-1.0727	-0.00055811	-1.873	-0.00097447	-2.9457	-0.0015326	520.2675185772991	80.758	0.16828	80.607	80.471	80.639	-0.15168					5	3	2	0	0	0	0.027866	1	10005	10005		44.117	0	1	53458	+		90605	19986	62953	63056	100966	100966					0.003118996852208511
YLIWWNGG	8	Unmodified	_YLIWWNGG_					0	0	0		ENST00000470690.5_1_17:39987086-39988698:-|nuORF	ENST00000470690.5_1_17:39987086-39988698:-|nuORF	ENST00000470690.5_1_17:39987086-39988698:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	503.7872619628906	2	504.750527	1007.4865	-0.74105	-0.00037404	-0.52585	-0.00026542	-1.2669	-0.00063947	505.2507322818609	37.43	0.51007	37.221	36.999	37.509	-0.2092					17	12	2	0	0	0	0.027866	1	3027	3027		39.021	0.21535	1	129170			90606	14936	62954	63057	100967	100967					-0.016941804113798753
YLKARHVQ	8	Unmodified	_YLKARHVQ_					0	0	0			REV__ADCK5|p.H220Y|1|0.18|ENSG00000173137|chr8:144391248-144391248|C/T|missense_variant	REV__ADCK5|p.H220Y|1|0.18|ENSG00000173137|chr8:144391248-144391248|C/T|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	507.7960510253906	2	507.795801	1013.57705	0.12198	6.194E-05	-1.6685	-0.00084727	-1.5465	-0.00078533	507.7944582140832	21.294	0.88113	21.103	20.538	21.42	-0.19072					27	17	2	0	0	0	0.94517	1	649	649		45.952	1.4209	1	159010	+		90607	19070	62955	63058	100968	100968					0.07080288636893783
YLKDEIEEL	9	Unmodified	_YLKDEIEEL_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.2950439453125	2	576.295162	1150.57577	0.15058	8.678E-05	-0.66722	-0.00038451	-0.51664	-0.00029774	576.2947017810656	59.775	0.84932	59.775	59.444	60.294	0					68	22	5	0	0	0	0.013887	2	6844	6832;6844		180.93	37.819	1	4455600			90608	6111	62956	63059	100969;100970	100970					0.006505649668270053
YLKDEIEEL	9	Unmodified	_YLKDEIEEL_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.295166015625	2	576.295162	1150.57577	-0.18987	-0.00010942	-0.32868	-0.00018942	-0.51855	-0.00029884	576.2949062366097	59.91	1.0066	59.709	59.427	60.434	-0.20016					75	26	4	0	0	0	0.013468	3	6848	6823;6836;6848		225.24	58.558	1	3709300			90609	6111	62956	63059	100971;100972;100973	100973					0.006505649668270053
YLKDEIEEL	9	Unmodified	_YLKDEIEEL_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.2952880859375	2	576.295162	1150.57577	-0.5275	-0.00030399	-0.026692	-1.5382E-05	-0.55419	-0.00031938	576.295154870101	59.591	0.89513	59.677	59.314	60.21	0.085686					68	23	5	0	0	0	0.013924	2	6735	6724;6735		190.26	37.791	1	3759400			90610	6111	62956	63059	100974;100975	100975					0.006505649668270053
YLKEASQAT	9	Unmodified	_YLKEASQAT_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	505.75848388671875	2	505.761289	1009.50803	0.68316	0.00034551	-2.412	-0.0012199	-1.7289	-0.0008744	505.7600834624134	106.73	0.59353	106.73	106.39	106.98	0					46	19	3	0	0	0	0.59099	1	13726	13726		53.351	0	1	386600	+		90611	28157	62957	63060	100976	100976					0.0036515982666287528
YLKEIARKV	9	Unmodified	_YLKEIARKV_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	560.3235473632812	2	560.347866	1118.68118	0.19624	0.00010996	-1.081	-0.00060574	-0.88477	-0.00049578	560.3456012507924	67.94	0.4883	67.959	67.63	68.118	0.018913					15	12	2	0	0	0	0.024438	1	8021	8021		52.937	18.764	1	118230	+		90612	21428	62958	63061	100977	100977					0.1265857067376146
YLKFAFDI	8	Unmodified	_YLKFAFDI_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.7635498046875	2	508.776211	1015.53787	-0.03126	-1.5904E-05	4.4664	0.0022724	4.4351	0.0022565	509.2795177219883	49.378	0.83297	49.196	48.883	49.716	-0.18206					30	21	2	0	0	0	0.027866	1	4905	4905		35.201	9.7505	1	843830	+		90613	37230	62959	63062	100978	100978					0.030721435626674065
YLKGAFLRFRI	11	Unmodified	_YLKGAFLRFRI_					0	0	0		ENST00000373758.4_1_10:65380866-65380983:+|nuORF	ENST00000373758.4_1_10:65380866-65380983:+|nuORF	ENST00000373758.4_1_10:65380866-65380983:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	461.9483337402344	3	461.946835	1382.81868	-0.00026872	-1.2413E-07	3.3382	0.0015421	3.3379	0.0015419	461.94827243331906	107.09	0.67344	106.97	106.68	107.35	-0.1238					80	22	4	0	0	0	1.0532	1	13339	13339		24.232	4.9691	1	1527500			90614	13091	62960	63063	100979	100979					0.14257899273184194
YLKGAFLRFRI	11	Unmodified	_YLKGAFLRFRI_					0	0	0		ENST00000373758.4_1_10:65380866-65380983:+|nuORF	ENST00000373758.4_1_10:65380866-65380983:+|nuORF	ENST00000373758.4_1_10:65380866-65380983:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	461.9481506347656	3	461.946835	1382.81868	0.61239	0.00028289	2.6133	0.0012072	3.2257	0.0014901	461.94794392048686	107.2	0.53325	107.04	106.81	107.34	-0.15772					68	20	4	0	0	0	1.0563	1	13311	13311		23.378	4.8469	1	1520300			90615	13091	62960	63063	100980	100980					0.14257899273184194
YLKGLQDSI	9	Unmodified	_YLKGLQDSI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	518.7879028320312	2	518.787307	1035.56006	-0.39956	-0.00020729	0.062686	3.2521E-05	-0.33687	-0.00017476	518.7871797152716	53.516	0.91676	53.516	53.16	54.076	0					37	25	2	0	0	0	0.030064	2	5794	5794;5806		141.52	19.344	1	2952300			90616	2053	62961	63064	100981;100982	100981					0.04370323240414109
YLKGLQDSI	9	Unmodified	_YLKGLQDSI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.78857421875	2	518.787307	1035.56006	-0.74183	-0.00038485	0.40619	0.00021073	-0.33564	-0.00017412	518.7873896112626	53.61	1.0271	53.462	53.096	54.123	-0.14724					46	28	2	0	0	0	0.048057	1	5783	5783		129.42	19.301	1	2871600			90617	2053	62961	63064	100983	100983					0.04370323240414109
YLKGLQDSI	9	Unmodified	_YLKGLQDSI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.788818359375	2	518.787307	1035.56006	-0.96778	-0.00050207	0.59053	0.00030636	-0.37724	-0.00019571	518.7874754187422	53.367	0.9169	53.462	53.054	53.971	0.095669					39	25	2	0	0	0	0.016542	1	5699	5699		154.12	40.707	1	3135500			90618	2053	62961	63064	100984	100984					0.04370323240414109
YLKIELVFIYL	11	Unmodified	_YLKIELVFIYL_					0	0	0			REV__ENSG00000184986|ENST00000392519|TMEM121	REV__ENSG00000184986|ENST00000392519|TMEM121	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	471.95159912109375	3	471.951252	1412.83193	0.59581	0.0002812	0.074729	3.5269E-05	0.67054	0.00031646	471.9513655918655	104.32	0.63007	104.32	104.07	104.7	-0.0032196					43	15	5	0	0	0	1.0855	1	13328	13328		15.333	0	1	377380	+		90619	27717	62962	63065	100985	100985					0.1420229254190417
YLKIQELF	8	Unmodified	_YLKIQELF_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	527.8177490234375	2	527.302593	1052.59063	-0.064827	-3.4183E-05	-3.0487	-0.0016076	-3.1135	-0.0016418	527.3021308673726	80.778	0.40408	80.632	80.409	80.813	-0.146					16	9	3	0	0	0	0.027866	1	9664	9664		79.939	13.51	1	95625	+		90620	27972	62963	63066	100986	100986					0.06644101625443
YLKIQELF	8	Unmodified	_YLKIQELF_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.302593	1052.59063	-0.11689	-6.1635E-05	0.093452	4.9278E-05	-0.023435	-1.2358E-05	527.3027298119625	80.79	0.31668	80.552	80.45	80.767	-0.23784	-0.04001	0.0014472	NaN	79.939	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149390	+		90621	27972	62963	63066							0.06644101625443
YLKKKKVQIV	10	Unmodified	_YLKKKKVQIV_					0	0	0		ENST00000237530.10_1_20:35869751-35869895:+|nuORF	ENST00000237530.10_1_20:35869751-35869895:+|nuORF	ENST00000237530.10_1_20:35869751-35869895:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	623.914794921875	2	623.915916	1245.81728	0.93975	0.00058632	-0.12137	-7.5724E-05	0.81838	0.0005106	623.9157293580129	107.7	0.30437	107.7	107.55	107.85	0					23	15	2	0	0	0	1.093	1	13823	13823		7.1934	0.45781	1	2190900			90622	11259	62964	63067	100987	100987					0.20420265184407072
YLKLLKCRI	9	Unmodified	_YLKLLKCRI_					0	0	0		ENSG00000172179|ENST00000306482|PRL	ENSG00000172179|ENST00000306482|PRL	ENSG00000172179|ENST00000306482|PRL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	576.2409057617188	2	575.362462	1148.71037	0.14305	8.2305E-05	-2.0488	-0.0011788	-1.9058	-0.0010965	575.3611205667705	68.386	0.7623	68.143	67.707	68.47	-0.24277					32	18	2	0	0	0	0.024381	1	7947	7947		55.504	14.932	1	138720			90623	8252	62965	63068	100988	100988					0.141963916983741
YLKLLTRAE	9	Unmodified	_YLKLLTRAE_					0	0	0			REV__ENSG00000099957|ENST00000413302|P2RX6	REV__ENSG00000099957|ENST00000413302|P2RX6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.8300170898438	2	553.832049	1105.64954	0.42937	0.0002378	-4.1738	-0.0023116	-3.7444	-0.0020738	553.8296181850462	87.337	2.4704	87.201	85.76	88.231	-0.13613					161	58	4	0	0	0	0.98697	1	10777	10777		23.042	0	1	1748900	+		90624	21025	62966	63069	100989	100989					0.10094577919812764
YLKNMKSRT	9	Unmodified	_YLKNMKSRT_					0	0	0		ENST00000529787.2_1_9:100086199-100092633:+|nuORF	ENST00000529787.2_1_9:100086199-100092633:+|nuORF	ENST00000529787.2_1_9:100086199-100092633:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.7284545898438	2	570.813333	1139.61211	0.72514	0.00041392	-3.8347	-0.0021889	-3.1096	-0.001775	570.8105231358717	51.544	0.5171	51.425	51.202	51.719	-0.11876					25	13	3	0	0	0	0.024319	1	5347	5347		56.721	0	1	459290			90625	16215	62967	63070	100990	100990					0.04789163382520201
YLKPGWIEL	9	Unmodified	_YLKPGWIEL_					0	0	0		ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	559.8114624023438	2	559.815867	1117.61718	0.50737	0.00028404	-0.39292	-0.00021996	0.11446	6.4075E-05	559.8152601891431	83.006	2.6173	82.825	82.679	85.296	-0.18079					113	61	3	0	0	0	0.29104	1	10014	10014		76.847	8.0598	1	597740			90626	7859	62968	63071	100991	100991					0.06307790516802925
YLKRTPHK	8	Unmodified	_YLKRTPHK_					0	0	0		ENSG00000077157|ENST00000608999|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	522.261474609375	2	521.811451	1041.60835	-0.33696	-0.00017583	3.1766	0.0016576	2.8396	0.0014817	521.8128566801255	41.96	1.6049	41.837	41.456	43.061	-0.12299					83	42	3	0	0	0	0.027866	1	3805	3805		53.351	26.659	1	576710			90627	1602	62969	63072	100992	100992					0.0892086167098114
YLKSKGAEI	9	Unmodified	_YLKSKGAEI_					0	0	0		ENST00000531186.5_1_11:32605433-32610279:+|nuORF;ENSG00000149100|ENST00000531120|EIF3M	ENST00000531186.5_1_11:32605433-32610279:+|nuORF	ENST00000531186.5_1_11:32605433-32610279:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	504.7894287109375	2	504.78985	1007.56515	-0.91532	-0.00046205	0.23173	0.00011697	-0.68359	-0.00034507	504.7898656159052	28.384	0.73597	28.139	27.842	28.578	-0.24524					45	17	4	0	0	0	0.247	1	1649	1649		82.75	0.44546	1	1975300			90628	6063	62970	63073	100993	100993					0.06166627103038991
YLKSYRLL	8	Unmodified	_YLKSYRLL_					0	0	0			REV__ENSG00000182492|ENST00000331595|BGN	REV__ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	528.31396484375	2	528.316035	1054.61752	0.93363	0.00049325	-3.9645	-0.0020945	-3.0309	-0.0016013	528.314039597707	97.298	1.0642	97.298	96.793	97.857	-3.0518E-05					54	23	3	0	0	0	0.845	1	12373	12373		55.504	0	1	285260	+		90629	27481	62971	63074	100994	100994					0.09239210236660256
YLKSYRLL	8	Unmodified	_YLKSYRLL_					0	0	0			REV__ENSG00000182492|ENST00000331595|BGN	REV__ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	528.3158569335938	2	528.316035	1054.61752	-0.13654	-7.2137E-05	-2.9724	-0.0015704	-3.109	-0.0016425	528.3146190415623	97.474	0.97646	97.313	96.862	97.838	-0.16106					47	21	3	0	0	0	0.80469	1	12088	12088		58.782	9.3404	1	223940	+		90630	27481	62971	63074	100995	100995					0.09239210236660256
YLKVKGNVF	9	Unmodified	_YLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.3157348632812	2	534.316035	1066.61752	-1.0622	-0.00056758	-0.16956	-9.0598E-05	-1.2318	-0.00065817	534.3158522002651	44.151	1.0435	44.047	43.78	44.823	-0.10468					81	27	5	0	0	0	0.11848	1	4098	4098		106.42	32.16	1	10861000			90631	2886	62972	63075	100996	100996					0.08687210236666942
YLKVKGNVF	9	Unmodified	_YLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.314453125	2	534.316035	1066.61752	-1.3315	-0.00071143	0.15734	8.4067E-05	-1.1741	-0.00062736	534.3160114790995	44.318	1.1233	44.074	43.79	44.913	-0.2444					86	29	4	0	0	0	0.08613	2	4108	4099;4108		115.46	19.269	1	9049800			90632	2886	62972	63075	100997;100998	100998					0.08687210236666942
YLKVKGNVF	9	Unmodified	_YLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.3153076171875	2	534.316035	1066.61752	-1.4278	-0.00076288	0.42921	0.00022933	-0.99857	-0.00053355	534.3161115980698	44.309	1.1916	44.09	43.788	44.979	-0.21938					87	31	5	0	0	0	0.11848	2	4110	4097;4110		106.42	32.16	1	9859700			90633	2886	62972	63075	100999;101000	101000					0.08687210236666942
YLKVLERF	8	Unmodified	_YLKVLERF_					0	0	0			REV__ENSG00000198812|ENST00000361484|LRRC10	REV__ENSG00000198812|ENST00000361484|LRRC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	534.3165283203125	2	534.316035	1066.61752	-1.0622	-0.00056758	-0.16956	-9.0598E-05	-1.2318	-0.00065817	534.3158522002651	44.151	1.0435	44.047	43.78	44.823	-0.10468					81	27	5	0	0	0	0.44658	3	4086	4086;4111;4123		90.777	10.769	1	10861000	+		90634	28486	62973	63076	101001;101002;101003	101001					0.08687210236666942
YLKVLERF	8	Unmodified	_YLKVLERF_					0	0	0			REV__ENSG00000198812|ENST00000361484|LRRC10	REV__ENSG00000198812|ENST00000361484|LRRC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	534.315185546875	2	534.316035	1066.61752	-1.3315	-0.00071143	0.15734	8.4067E-05	-1.1741	-0.00062736	534.3160114790995	44.318	1.1233	44.074	43.79	44.913	-0.2444					86	29	4	0	0	0	0.47665	2	4121	4121;4133		87.754	16.373	1	9049800	+		90635	28486	62973	63076	101004;101005	101004					0.08687210236666942
YLKVLERF	8	Unmodified	_YLKVLERF_					0	0	0			REV__ENSG00000198812|ENST00000361484|LRRC10	REV__ENSG00000198812|ENST00000361484|LRRC10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	534.3156127929688	2	534.316035	1066.61752	-1.4278	-0.00076288	0.42921	0.00022933	-0.99857	-0.00053355	534.3161115980698	44.309	1.1916	44.09	43.788	44.979	-0.21938					87	31	5	0	0	0	0.42912	1	4121	4121		93.195	10.89	1	9859700	+		90636	28486	62973	63076	101006	101006					0.08687210236666942
YLKVLVDSL	9	Unmodified	_YLKVLVDSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.3150024414062	2	525.3157	1048.61685	-0.98699	-0.00051848	0.66685	0.0003503	-0.32015	-0.00016818	525.3158910920552	69.141	0.83323	68.88	68.666	69.499	-0.26166					48	19	4	0	0	0	0.016871	1	8016	8016		152.47	49.697	1	913090			90637	6477	62974	63077	101007	101007					0.09448370796940253
YLKVLVDSL	9	Unmodified	_YLKVLVDSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.3157348632812	2	525.3157	1048.61685	0.19604	0.00010298	-0.76963	-0.0004043	-0.57358	-0.00030131	525.3151504693989	69.096	0.82028	68.853	68.587	69.407	-0.24277					50	19	3	0	0	0	0.013094	1	8017	8017		171.38	50.764	1	1391200			90638	6477	62974	63077	101008	101008					0.09448370796940253
YLKVLVDSL	9	Unmodified	_YLKVLVDSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.3151245117188	2	525.3157	1048.61685	-0.058666	-3.0818E-05	-0.42508	-0.0002233	-0.48374	-0.00025412	525.3153730410208	69.097	0.82242	68.867	68.559	69.382	-0.23048					49	19	4	0	0	0	0.016871	1	8006	8006		152.47	53.096	1	1339000			90639	6477	62974	63077	101009	101009					0.09448370796940253
YLLALGTMAAV	11	Unmodified	_YLLALGTMAAV_					0	0	0			REV__ENST00000236067.8_1_1:44440634-44441766:+|nuORF	REV__ENST00000236067.8_1_1:44440634-44441766:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2797241210938	2	561.81501	1121.61547	0.26583	0.00014935	-4.3967	-0.0024701	-4.1309	-0.0023208	561.8122294558611	84.755	0.74254	84.755	84.463	85.206	0					45	17	4	0	0	0	0.024766	1	10619	10619		35.618	0	1	652670	+		90640	29429	62975	63078	101010	101010					0.05952413436534698
YLLALTAS	8	Unmodified	_YLLALTAS_					0	0	0		ENSG00000257008|ENST00000582579|GPR142;nc|ENSG00000257008|Q7Z601|GPR142	ENSG00000257008|ENST00000582579|GPR142	ENSG00000257008|ENST00000582579|GPR142	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	426.2461853027344	2	426.247286	850.48002	0.090279	3.8481E-05	-2.9325	-0.00125	-2.8422	-0.0012115	426.2459398709793	86.867	2.4687	86.822	85.947	88.415	-0.045105					139	58	5	0	0	0	1.0572	1	10906	10906		28.254	0	1	11102000			90641	10913	62976	63079	101011	101011					0.048798816372254805
YLLALTAS	8	Unmodified	_YLLALTAS_					0	0	0		ENSG00000257008|ENST00000582579|GPR142;nc|ENSG00000257008|Q7Z601|GPR142	ENSG00000257008|ENST00000582579|GPR142	ENSG00000257008|ENST00000582579|GPR142	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2460021972656	2	426.247286	850.48002	0.26941	0.00011483	-3.1272	-0.001333	-2.8578	-0.0012181	426.2458756986678	86.981	2.1546	86.794	86.167	88.321	-0.18696					137	51	5	0	0	0	1.0572	1	10537	10537		28.254	0	1	14269000			90642	10913	62976	63079	101012	101012					0.048798816372254805
YLLDLHSYL	9	Unmodified	_YLLDLHSYL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	568.8023071289062	2	568.802957	1135.59136	-1.0161	-0.00057799	0.39741	0.00022605	-0.61874	-0.00035194	568.8031431311538	81.527	1.612	81.527	81.138	82.75	0					106	38	4	0	0	0	0.016838	7	10146	10146;10154;10178;10190;10202;10217;10230		152.63	13.881	1	5530400			90643	5818	62977	63080	101013;101014;101015;101016;101017;101018;101019	101013					0.028988962745188473
YLLDLHSYL	9	Unmodified	_YLLDLHSYL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	568.8023071289062	2	568.802957	1135.59136	-0.38413	-0.0002185	-0.2841	-0.0001616	-0.66824	-0.00038009	568.8027695833946	81.635	1.6138	81.504	81.176	82.789	-0.13075					140	38	6	0	0	0	0.013805	4	10131	10131;10156;10169;10181		167.82	34.012	1	5479500			90644	5818	62977	63080	101020;101021;101022;101023	101020					0.028988962745188473
YLLDLHSYL	9	Unmodified	_YLLDLHSYL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.8021850585938	2	568.802957	1135.59136	-1.2999	-0.0007394	0.65449	0.00037227	-0.64543	-0.00036712	568.8033154427069	81.446	1.319	81.47	81.167	82.485	0.023911					104	31	5	0	0	0	0.013805	6	10090	10056;10078;10090;10102;10114;10130		167.82	34.012	1	5378700			90645	5818	62977	63080	101024;101025;101026;101027;101028;101029	101026					0.028988962745188473
YLLDLHSYL	9	Unmodified	_YLLDLHSYL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2839965820312	2	568.802957	1135.59136	0.36651	0.00020847	-1.639	-0.00093228	-1.2725	-0.00072381	568.8029452175123	81.643	1.1843	81.414	80.98	82.165	-0.2289					65	27	4	0	0	0	0.024323	1	9799	9799		63.306	17.354	1	3066800			90646	5818	62977	63080	101030	101030					0.028988962745188473
YLLDNYQVL	9	Unmodified	_YLLDNYQVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.79736328125	2	570.800414	1139.58628	-0.91783	-0.0005239	-3.6052	-0.0020579	-4.5231	-0.0025818	570.7981345302105	57.33	0.92385	57.33	56.643	57.567	0					81	25	5	0	0	0	0.4752	1	6449	6449		60.972	4.2509	1	2676700			90647	9730	62978	63081	101031	101031					0.022065924119033298
YLLDNYQVL	9	Unmodified	_YLLDNYQVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	570.800414	1139.58628	0.35506	0.00020267	-4.8967	-0.002795	-4.5417	-0.0025924	570.7972346422104	57.52	0.94355	57.345	56.665	57.608	-0.1749	0.013849	-0.00096292	NaN	60.972	81	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2546400			90648	9730	62978	63081							0.022065924119033298
YLLDNYQVL	9	Unmodified	_YLLDNYQVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	570.800414	1139.58628	-0.97548	-0.0005568	-3.5282	-0.0020139	-4.5037	-0.0025707	570.7980792204012	57.231	1.0329	57.326	56.47	57.503	0.095306	-0.0044647	0.00059939	NaN	60.972	74	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2319200			90649	9730	62978	63081							0.022065924119033298
YLLDNYQVL	9	Unmodified	_YLLDNYQVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	570.800414	1139.58628	-0.56994	-0.00032532	-3.963	-0.0022621	-4.533	-0.0025874	570.7979415385354	57.477	0.64983	57.299	57.025	57.675	-0.17775	-0.03147	0.00010297	NaN	60.972	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511750			90650	9730	62978	63081							0.022065924119033298
YLLDNYQVL	9	Unmodified	_YLLDNYQVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	570.800414	1139.58628	0.25732	0.00014688	-4.7294	-0.0026995	-4.4721	-0.0025527	570.7974704329015	57.53	0.6622	57.336	56.97	57.632	-0.19374	0.0051515	-0.00077191	NaN	60.972	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541680			90651	9730	62978	63081							0.022065924119033298
YLLDNYQVL	9	Unmodified	_YLLDNYQVL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	570.800414	1139.58628	-0.52914	-0.00030203	-3.7403	-0.002135	-4.2695	-0.002437	570.7980212863492	57.583	0.71121	57.349	56.952	57.664	-0.23363	0.018036	0.00035719	NaN	60.972	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372830			90652	9730	62978	63081							0.022065924119033298
YLLDQHILI	9	Unmodified	_YLLDQHILI_					0	0	0		nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-3|INPP5D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	564.76416015625	2	564.326599	1126.63865	0.54533	0.00030774	-1.2588	-0.00071037	-0.71347	-0.00040263	564.3264200398603	76.96	0.45852	76.709	76.484	76.943	-0.25162					19	10	3	0	0	0	0.024025	1	9163	9163		71.877	39.923	1	342650			90653	7882	62979	63082	101032	101032					0.08039175545536636
YLLEKSRAI	9	Unmodified	_YLLEKSRAI_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	546.823974609375	2	546.824224	1091.63389	-0.43917	-0.00024015	-0.089677	-4.9037E-05	-0.52885	-0.00028919	546.8240629390801	41.355	0.79892	41.219	40.869	41.668	-0.13553					55	20	4	0	0	0	0.15366	2	3655	3644;3655		98.629	10.873	1	2341800			90654	2185;2661;4704;18010	62980	63083	101033;101034	101034					0.09174291402746348
YLLEKSRAI	9	Unmodified	_YLLEKSRAI_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	546.8240966796875	2	546.824224	1091.63389	-0.43959	-0.00024038	-0.028783	-1.5739E-05	-0.46837	-0.00025612	546.824088654451	41.56	0.69286	41.332	41.044	41.737	-0.2278					44	17	4	0	0	0	0.15366	3	3683	3661;3671;3683		98.629	10.903	1	2257300			90655	2185;2661;4704;18010	62980	63083	101035;101036;101037	101037					0.09174291402746348
YLLEKSRAI	9	Unmodified	_YLLEKSRAI_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	546.824224	1091.63389	-0.7284	-0.00039831	0.14972	8.1869E-05	-0.57869	-0.00031644	546.8241898510146	41.594	0.7166	41.364	41.08	41.797	-0.2303	0.058871	0.00015121	NaN	98.629	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2191300			90656	2185;2661;4704;18010	62980	63083							0.09174291402746348
YLLEKSRAV	9	Unmodified	_YLLEKSRAV_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	539.8162841796875	2	539.816399	1077.61824	0.66421	0.00035855	-0.98905	-0.00053391	-0.32484	-0.00017536	539.8157417618531	37.235	0.52004	37.235	36.966	37.486	0					46	13	4	0	0	0	0.22902	1	3009	3009		85.161	7.8432	1	3192800			90657	4670	62981	63084	101038	101038					0.0825400488570267
YLLESVNKL	9	Unmodified	_YLLESVNKL_					0	0	0		ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.8109130859375	2	539.810782	1077.60701	-0.51873	-0.00028002	0.1667	8.9986E-05	-0.35203	-0.00019003	539.8108631949185	62.126	0.58263	61.913	61.624	62.206	-0.21375					50	14	5	0	0	0	0.053401	2	6980	6969;6980		127.46	42.301	1	3095200			90658	10027	62982	63085	101039;101040	101040					0.0713118279156788
YLLESVNKL	9	Unmodified	_YLLESVNKL_					0	0	0		ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.810791015625	2	539.810782	1077.60701	-1.1487	-0.00062007	0.58877	0.00031782	-0.55991	-0.00030225	539.8111163216098	62.039	0.80807	61.861	61.495	62.304	-0.17781					69	20	6	0	0	0	0.020687	2	6966	6966;6977		148.99	35.575	1	3677300			90659	10027	62982	63085	101041;101042	101041					0.0713118279156788
YLLESVNKL	9	Unmodified	_YLLESVNKL_					0	0	0		ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	ENSG00000197632|ENST00000299502|SERPINB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.8108520507812	2	539.810782	1077.60701	-1.0964	-0.00059186	0.65793	0.00035516	-0.4385	-0.00023671	539.8111827258946	62.172	0.70035	61.915	61.628	62.328	-0.25725					61	17	5	0	0	0	0.013293	2	6969	6969;6979		176.09	50.273	1	2906400			90660	10027	62982	63085	101043;101044	101043					0.0713118279156788
YLLFCIPF	8	Carbamidomethyl (C)	_YLLFC(Carbamidomethyl (C))IPF_	YLLFC(1)IPF		YLLFC(55)IPF		0	1	0		ENSG00000166573|ENST00000299727|GALR1	ENSG00000166573|ENST00000299727|GALR1	ENSG00000166573|ENST00000299727|GALR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	536.7814331054688	2	536.780439	1071.54633	-1.3572	-0.00072851	3.9692	0.0021306	2.612	0.0014021	536.7820951950755	61.1	1.5891	60.846	59.757	61.346	-0.25374					54	39	2	0	0	0	0.8525	1	6812	6812		54.895	8.9426	1	1400500			90661	7583	62983	63086	101045	101045	90				0.013413742076181734
YLLFFPNDEV	10	Unmodified	_YLLFFPNDEV_					0	0	0		nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	nc|ENSG00000117385|Q32P28-2|P3H1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	420.521728515625	3	419.544773	1255.61249	-0.38888	-0.00016315	3.6994	0.0015521	3.3105	0.0013889	419.54624884732	24.995	0.39317	24.768	24.538	24.931	-0.22683					19	8	3	0	0	0	0.03519	1	1152	1152		12.207	0	1	88013			90662	3624	62984	63087	101046	101046					-0.005091384166235002
YLLFFQALL	9	Unmodified	_YLLFFQALL_					0	0	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	564.7646484375	2	564.328611	1126.64267	0.42535	0.00024004	-4.3149	-0.002435	-3.8896	-0.002195	564.3265044249763	77.079	0.37451	76.811	76.552	76.927	-0.26806					17	8	3	0	0	0	0.024325	1	9139	9139		60.294	0	1	351990	+		90663	25913	62985	63088	101047	101047					0.08441265039232348
YLLFSLLI	8	Unmodified	_YLLFSLLI_					0	0	0			REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|67	REV__chr1:59653519-59660219|372|15.17|0.05|8.23|+|1|TE_info:L1PA2,L1PA2_dup41,L1,LINE,donor,-,59647748,59653519|None,FGGY|67	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	491.30279541015625	2	491.304604	980.594655	0.24764	0.00012166	-4.2695	-0.0020976	-4.0218	-0.0019759	491.3024242683746	95.458	1.0687	95.462	95.009	96.078	0.0041199					59	24	3	0	0	0	1.0133	1	12085	12085		35.201	0	1	1241700	+		90664	19334	62986	63089	101048	101048					0.1035819111920091
YLLGLGPL	8	Unmodified	_YLLGLGPL_					0	0	0		ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	ENSG00000159063|ENST00000299626|ALG8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	423.554931640625	2	423.260197	844.50584	0.36689	0.00015529	-2.962	-0.0012537	-2.5951	-0.0010984	423.25880153469853	23.758	0.73296	23.556	23.279	24.012	-0.20193					38	16	3	0	0	0	0.027866	1	1019	1019		16.705	6.5202	1	559490			90665	6716	62987	63090	101049	101049					0.07736775879516244
YLLHTMVLI	9	Oxidation (M)	_YLLHTM(Oxidation (M))VLI_		YLLHTM(1)VLI		YLLHTM(68)VLI	0	0	1		ENST00000454171.1_1_7:84658221-84658887:+|nuORF	ENST00000454171.1_1_7:84658221-84658887:+|nuORF	ENST00000454171.1_1_7:84658221-84658887:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	559.8155517578125	2	559.817553	1117.62055	-0.40949	-0.00022924	-3.2539	-0.0018216	-3.6634	-0.0020508	559.8157220149477	80.779	2.4832	80.633	80.076	82.559	-0.146					229	58	6	0	0	0	0.36105	1	9787	9787		68.485	15.548	1	31806000			90666	14562	62988	63091	101050	101050		510			0.06644717299172953
YLLKLLVK	8	Unmodified	_YLLKLLVK_					0	0	0		ENST00000265044.6_1_3:156259029-156259083:-|nuORF	ENST00000265044.6_1_3:156259029-156259083:-|nuORF	ENST00000265044.6_1_3:156259029-156259083:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.7615661621094	2	495.341521	988.668489	1.1857	0.00058735	0.10695	5.2975E-05	1.2927	0.00064032	495.34158554635195	64.186	0.28667	64.186	64.097	64.384	0					12	7	2	0	0	0	0.027866	1	7571	7571		19.36	0	1	260550			90667	11581	62989	63092	101051	101051					0.17370159281517772
YLLKTTGIV	9	Unmodified	_YLLKTTGIV_					0	0	0			REV__ENSG00000162104|ENST00000294016|ADCY9	REV__ENSG00000162104|ENST00000294016|ADCY9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	504.2972717285156	2	504.310418	1006.60628	-0.094799	-4.7808E-05	2.0526	0.0010352	1.9578	0.00098735	504.31182431912123	61.538	0.33773	61.609	61.512	61.85	0.071125					10	8	2	0	0	0	0.024263	1	7046	7046		60.972	5.4677	1	157040	+		90668	25416	62990	63093	101052	101052					0.1032438814249872
YLLLLLPE	8	Unmodified	_YLLLLLPE_					0	0	0		ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant;ASXL3|p.E1005Dfs*25|1|0.22|ENSG00000141431|chr18:33740419-33740432|GGAACCAAGGGTTC/-|frameshift_variant;ENSG00000141431|ENST00000269197|ASXL3;ASXL3|p.P618Qfs*59|1|0.52|ENSG00000141431|chr18:33739255-33739255|C/-|frameshift_variant;nc|ENSG00000141431|Q9C0F0-2|ASXL3	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	ASXL3|p.V876Sfs*13|1|0.51|ENSG00000141431|chr18:33740021-33740022|-/A|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	488.2301025390625	2	487.302062	972.58957	-0.10813	-5.269E-05	-3.9745	-0.0019368	-4.0827	-0.0019895	487.2999216999013	31.391	0.45017	31.238	31.006	31.456	-0.15231					24	11	3	0	0	0	0.027866	1	2082	2082		12.959	2.6939	1	252750			90669	141	62991	63094	101053	101053					0.10217887256567337
YLLLNNQEL	9	Unmodified	_YLLLNNQEL_					0	0	0		nc|ENSG00000100991|Q8TEL6-2|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;ENSG00000100991|ENST00000252015|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	561.2793579101562	2	560.305864	1118.59717	0.85385	0.00047842	1.7215	0.00096455	2.5753	0.001443	560.8092609118589	85.451	0.37863	85.451	85.164	85.543	0					9	8	2	0	0	0	0.024487	1	10689	10689		31.955	7.7521	1	43479			90670	2270	62992	63095	101054	101054					0.04261994786179457
YLLLPMMGL	9	Oxidation (M)	_YLLLPMM(Oxidation (M))GL_		YLLLPM(0.007)M(0.993)GL		YLLLPM(-21)M(21)GL	0	0	1			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.7876586914062	2	533.787407	1065.56026	-0.17378	-9.2763E-05	0.89732	0.00047898	0.72353	0.00038621	533.787744147402	74.259	0.71981	73.983	73.799	74.519	-0.27573					43	19	3	0	0	0	0.48384	1	8759	8759		60.404	12.488	2	2162000	+		90671	21141	62993	63096	101055	101055		649			0.030102836444257264
YLLLSVVQF	9	Unmodified	_YLLLSVVQF_					0	0	0		SLC38A11|p.L114V|1|0.14|ENSG00000169507|chr2:164939479-164939479|A/C|missense_variant	SLC38A11|p.L114V|1|0.14|ENSG00000169507|chr2:164939479-164939479|A/C|missense_variant	SLC38A11|p.L114V|1|0.14|ENSG00000169507|chr2:164939479-164939479|A/C|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.28125	2	541.318243	1080.62193	-1.0071	-0.00054516	-2.8976	-0.0015685	-3.9047	-0.0021137	541.316714323068	52.333	0.42733	52.149	51.927	52.354	-0.18404					14	10	2	0	0	0	0.024405	1	5406	5406		35.618	0.41757	1	72087			90672	37889	62994	63097	101056	101056					0.0848467465957583
YLLLTLFRISD	11	Unmodified	_YLLLTLFRISD_					0	0	0		ENST00000199448.8_2_7:37990187-37990421:+|nuORF	ENST00000199448.8_2_7:37990187-37990421:+|nuORF	ENST00000199448.8_2_7:37990187-37990421:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.9327087402344	3	451.930739	1352.77039	1.0325	0.00046661	3.2242	0.0014571	4.2567	0.0019237	451.93212245532663	98.834	1.9821	98.709	97.881	99.864	-0.12434					192	50	5	0	0	0	1.0739	1	12275	12275		18.531	1.3643	1	1299700			90673	11130	62995	63098	101057	101057					0.10811360842626527
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.8207397460938	2	519.820953	1037.62735	-0.90481	-0.00047034	-0.075205	-3.9093E-05	-0.98001	-0.00050943	519.821274373032	80.739	6.9474	80.739	80.331	87.278	0					374	165	5	0	0	0	0.016798	17	10016	10005;10016;10028;10040;10052;10064;10076;10088;10100;10112;10136;10148;10160;10172;10186;10198;10210		152.83	92.43	1	156200000			90674	2921	62996	63099	101058;101059;101060;101061;101062;101063;101064;101065;101066;101067;101068;101069;101070;101071;101072;101073;101074	101059					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8202514648438	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.515	1	80.536	80.036	81.036	0.021439								0	0	0	0.014317	1	9931	9931		152.83	66.925	1				90675	2921	62996	63099	101075	101075					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8203125	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.578	1	80.6	80.1	81.1	0.021439								0	0	0	0.014317	1	9940	9940		152.83	60.643	1				90676	2921	62996	63099	101076	101076					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.820556640625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.661	1	80.685	80.185	81.185	0.023911								0	0	0	0.0183	1	9952	9952		133.45	44.807	1				90677	2921	62996	63099	101077	101077					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8206176757812	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.74	1	80.764	80.264	81.264	0.023911								0	0	0	0.0183	1	9964	9964		133.45	67.646	1				90678	2921	62996	63099	101078	101078					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8208618164062	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.817	1	80.841	80.341	81.341	0.023911								0	0	0	0.033771	1	9976	9976		116.12	36.182	1				90679	2921	62996	63099	101079	101079					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.820556640625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.893	1	80.917	80.417	81.417	0.023911								0	0	0	0.014317	1	9988	9988		152.83	92.43	1				90680	2921	62996	63099	101080	101080					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8206176757812	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.972	1	80.996	80.496	81.496	0.023911								0	0	0	0.014317	1	10000	10000		152.83	55.361	1				90681	2921	62996	63099	101081	101081					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8207397460938	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.05	1	81.074	80.574	81.574	0.023911								0	0	0	0.014317	1	10012	10012		152.83	87.031	1				90682	2921	62996	63099	101082	101082					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8209228515625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.131	1	81.155	80.655	81.655	0.023911								0	0	0	0.0183	1	10024	10024		133.45	67.646	1				90683	2921	62996	63099	101083	101083					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.822509765625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.212	1	81.236	80.736	81.736	0.023911								0	0	0	0.0183	1	10036	10036		133.45	72.478	1				90684	2921	62996	63099	101084	101084					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8252563476562	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.294	1	81.318	80.818	81.818	0.023911								0	0	0	0.12943	1	10048	10048		85.909	24.937	1				90685	2921	62996	63099	101085	101085					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8252563476562	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.376	1	81.4	80.9	81.9	0.023911								0	0	0	0.12943	1	10060	10060		85.909	24.937	1				90686	2921	62996	63099	101086	101086					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8228149414062	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.458	1	81.481	80.981	81.981	0.023911								0	0	0	0.033771	1	10072	10072		116.12	55.15	1				90687	2921	62996	63099	101087	101087					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.822021484375	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.54	1	81.564	81.064	82.064	0.023911								0	0	0	0.069706	1	10084	10084		100.36	18.055	1				90688	2921	62996	63099	101088	101088					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8216552734375	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.628	1	81.653	81.153	82.153	0.024529								0	0	0	0.0183	1	10097	10097		133.45	67.646	1				90689	2921	62996	63099	101089	101089					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8218383789062	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.713	1	81.739	81.239	82.239	0.025711								0	0	0	0.069706	1	10110	10110		100.36	39.388	1				90690	2921	62996	63099	101090	101090					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8220825195312	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.792	1	81.818	81.318	82.318	0.025711								0	0	0	0.41653	1	10122	10122		60.404	11.193	1				90691	2921	62996	63099	101091	101091					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8235473632812	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.872	1	81.898	81.398	82.398	0.025711								0	0	0	0.069706	1	10134	10134		100.36	31.875	1				90692	2921	62996	63099	101092	101092					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8230590820312	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.347	1	82.372	81.872	82.872	0.025711								0	0	0	0.23689	1	10202	10202		72.62	6.1906	1				90693	2921	62996	63099	101093	101093					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MSMS	OPSCC_39_ClassI_Rep-3	3	519.8223876953125	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.433	1	82.459	81.959	82.959	0.025711								0	0	0	0.41653	1	10214	10214		60.404	5.639	1				90694	2921	62996	63099	101094	101094					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.82080078125	2	519.820953	1037.62735	-0.13868	-7.2088E-05	-0.76989	-0.0004002	-0.90857	-0.00047229	519.8207943797133	80.709	2.8539	80.471	80.082	82.936	-0.23784					206	67	5	0	0	0	0.016798	11	9649	9639;9649;9661;9673;9685;9697;9710;9722;9795;9808;9838		152.83	81.456	1	86800000			90695	2921	62996	63099	101095;101096;101097;101098;101099;101100;101101;101102;101103;101104;101105	101096					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.8201904296875	2	519.820953	1037.62735	0.51964	0.00027012	-1.5907	-0.0008269	-1.0711	-0.00055678	519.8203598355412	80.693	3.8803	80.487	80.092	83.972	-0.20633					227	91	5	0	0	0	0.016798	11	9681	9657;9669;9681;9693;9705;9718;9730;9743;9821;9834;9847		152.83	81.456	1	79062000			90696	2921	62996	63099	101106;101107;101108;101109;101110;101111;101112;101113;101114;101115;101116	101108					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.8211059570312	2	519.820953	1037.62735	0.029998	1.5593E-05	-1.0454	-0.00054343	-1.0154	-0.00052784	519.8206102092751	80.618	3.0814	80.472	80.035	83.117	-0.146					209	72	5	0	0	0	0.016798	14	9636	9624;9636;9648;9660;9672;9684;9696;9708;9721;9778;9788;9801;9814;9832		152.83	75.987	1	78230000			90697	2921	62996	63099	101117;101118;101119;101120;101121;101122;101123;101124;101125;101126;101127;101128;101129;101130	101118					0.11004398242016578
YLLPRAGL	8	Unmodified	_YLLPRAGL_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	451.7759704589844	2	451.776545	901.538538	-1.0293	-0.00046503	0.94523	0.00042703	-0.084114	-3.8001E-05	451.7767749258337	44.302	0.88112	44.083	43.864	44.745	-0.21939					53	23	4	0	0	0	0.9224	1	4117	4117		49.211	2.4444	1	1926300			90698	5481	62997	63100	101131	101131					0.08382983002377387
YLLPRAGL	8	Unmodified	_YLLPRAGL_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	451.776545	901.538538	-0.59475	-0.00026869	-0.29568	-0.00013358	-0.89043	-0.00040228	451.77659790798384	44.187	0.60741	44.083	43.78	44.387	-0.10468	0.0056738	-0.00060357	NaN	49.211	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1322100			90699	5481	62997	63100							0.08382983002377387
YLLPRAGL	8	Unmodified	_YLLPRAGL_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	451.776545	901.538538	-0.92831	-0.00041939	0.26354	0.00011906	-0.66477	-0.00030033	451.77671202632456	44.31	0.80896	44.066	43.829	44.638	-0.2444	-0.011323	-9.8285E-05	NaN	49.211	46	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1501500			90700	5481	62997	63100							0.08382983002377387
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF;ENSG00000155189|ENST00000285518|AGPAT5	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	508.8229064941406	2	508.823161	1015.63177	-0.40757	-0.00020738	0.009576	4.8725E-06	-0.398	-0.00020251	508.82298845164956	101.75	1.2755	101.75	101.42	102.69	0					78	28	4	0	0	0	0.016588	5	13032	13012;13021;13032;13045;13057		153.88	70.598	1	1725400			90701	6458	62998	63101	101132;101133;101134;101135;101136	101134					0.12457862664939512
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF;ENSG00000155189|ENST00000285518|AGPAT5	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.82281494140625	2	508.823161	1015.63177	-0.19171	-9.7545E-05	0.0040701	2.0709E-06	-0.18764	-9.5474E-05	508.8230084269507	101.71	1.1201	101.72	101.29	102.41	0.0073471					70	25	4	0	0	0	0.016588	5	13002	12969;12979;12990;13002;13014		153.88	70.598	1	1705800			90702	6458	62998	63101	101137;101138;101139;101140;101141	101140					0.12457862664939512
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF;ENSG00000155189|ENST00000285518|AGPAT5	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	508.8230895996094	2	508.823161	1015.63177	0.13204	6.7184E-05	-0.29543	-0.00015032	-0.16339	-8.3135E-05	508.82284908226325	101.82	1.0139	101.82	101.44	102.46	-0.0054474					67	22	4	0	0	0	0.033883	5	12964	12943;12954;12964;12977;12990		138.48	67.102	1	2098800			90703	6458	62998	63101	101142;101143;101144;101145;101146	101144					0.12457862664939512
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF;ENSG00000155189|ENST00000285518|AGPAT5	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	508.8228759765625	2	508.823161	1015.63177	0.45379	0.0002309	-0.65286	-0.00033219	-0.19907	-0.00010129	508.8226011685868	101.61	0.53969	101.48	101.22	101.76	-0.13156					32	11	4	0	0	0	0.26797	2	12600	12600;12611		79.939	11.455	1	429950			90704	6458	62998	63101	101147;101148	101147					0.12457862664939512
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF;ENSG00000155189|ENST00000285518|AGPAT5	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.8227844238281	2	508.823161	1015.63177	0.15015	7.6401E-05	-0.20715	-0.0001054	-0.056994	-2.9E-05	508.822869453823	101.57	0.56902	101.45	101.19	101.76	-0.12576					37	12	4	0	0	0	0.16533	2	12619	12619;12629		96.048	33.069	1	426800			90705	6458	62998	63101	101149;101150	101149					0.12457862664939512
YLLPSVVLL	9	Unmodified	_YLLPSVVLL_					0	0	0		ENST00000518327.1_1_8:6566222-6612655:+|nuORF;ENSG00000155189|ENST00000285518|AGPAT5	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	508.82342529296875	2	508.823161	1015.63177	0.043847	2.231E-05	-0.37667	-0.00019166	-0.33282	-0.00016935	508.82278927346107	101.66	0.61308	101.49	101.24	101.85	-0.17178					33	13	4	0	0	0	0.12366	2	12607	12607;12618		105.27	47.458	1	413400			90706	6458	62998	63101	101151;101152	101151					0.12457862664939512
YLLPTMTSD	9	Unmodified	_YLLPTMTSD_					0	0	0			REV__ENST00000506924.1_1_4:170557184-170564073:+|nuORF	REV__ENST00000506924.1_1_4:170557184-170564073:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.7643432617188	2	520.752075	1039.4896	-0.82098	-0.00042753	-2.0349	-0.0010597	-2.8559	-0.0014872	520.750905499238	84.121	0.81208	84.121	83.692	84.504	0					30	18	2	0	0	0	0.024517	1	10506	10506		35.201	8.4046	1	252410	+		90707	34038	62999	63102	101153	101153					-0.028567181395374064
YLLPYENLL	9	Unmodified	_YLLPYENLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	569.3131713867188	2	569.313158	1136.61176	-0.96293	-0.00054821	0.83796	0.00047706	-0.12497	-7.1145E-05	569.3135694692141	96.382	1.4109	96.382	95.691	97.102	0					104	32	5	0	0	0	0.0088567	7	12280	12270;12280;12292;12304;12316;12328;12342		242.21	108.74	1	5879400			90708	1009	63000	63103	101154;101155;101156;101157;101158;101159;101160	101155					0.04892066934326067
YLLPYENLL	9	Unmodified	_YLLPYENLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.3134155273438	2	569.313158	1136.61176	0.50106	0.00028526	-0.66531	-0.00037877	-0.16425	-9.3511E-05	569.312763603817	96.278	1.3222	96.284	95.647	96.969	0.0065002					96	30	4	0	0	0	0.0152	6	12238	12215;12226;12238;12251;12263;12275		207.6	92.145	1	5475700			90709	1009	63000	63103	101161;101162;101163;101164;101165;101166	101163					0.04892066934326067
YLLPYENLL	9	Unmodified	_YLLPYENLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.3134155273438	2	569.313158	1136.61176	0.34064	0.00019393	-0.47876	-0.00027256	-0.13812	-7.8634E-05	569.3128776183937	96.375	1.4094	96.377	95.739	97.149	0.0020752					109	32	5	0	0	0	0.0088567	7	12215	12191;12203;12215;12227;12239;12252;12264		242.21	117.62	1	5998700			90710	1009	63000	63103	101167;101168;101169;101170;101171;101172;101173	101169					0.04892066934326067
YLLPYENLL	9	Unmodified	_YLLPYENLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	569.3132934570312	2	569.313158	1136.61176	0.4579	0.00026069	-0.03988	-2.2704E-05	0.41802	0.00023798	569.3129280348336	96.177	1.2405	96.04	95.639	96.88	-0.1367					77	28	4	0	0	0	0.12602	2	11884	11871;11884		104.75	38.943	1	1000200			90711	1009	63000	63103	101174;101175	101175					0.04892066934326067
YLLPYENLL	9	Unmodified	_YLLPYENLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	569.3138427734375	2	569.313158	1136.61176	0.88752	0.00050528	-0.40192	-0.00022882	0.4856	0.00027646	569.312711495435	96.248	1.3317	96.125	95.553	96.885	-0.12305					64	30	4	0	0	0	0.047345	1	11892	11892		129.68	41.928	1	1057900			90712	1009	63000	63103	101176	101176					0.04892066934326067
YLLPYENLL	9	Unmodified	_YLLPYENLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.Y1295Rfs*9|1|0.13|ENSG00000030066|chr11:47785009-47785030|GACTTTGTACCTCTCCAGGTAA/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.3132934570312	2	569.313158	1136.61176	-0.21903	-0.00012469	0.32716	0.00018626	0.10814	6.1563E-05	569.3131764647004	96.27	1.16	96.114	95.751	96.911	-0.15646					64	26	4	0	0	0	0.047345	2	11888	11872;11888		129.68	34.599	1	1024200			90713	1009	63000	63103	101177;101178	101178					0.04892066934326067
YLLQEPPRTV	10	Unmodified	_YLLQEPPRTV_					0	0	0		ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	608.3406982421875	2	608.340238	1214.66592	-2.0338	-0.0012372	2.1382	0.0013007	0.10441	6.3514E-05	608.3414278647323	55.229	1.1191	55.327	54.982	56.102	0.098015					85	30	4	0	0	0	0.29525	1	6018	6018		109.44	29.726	1	1754200			90714	8736	63001	63104	101179	101179					0.06717659085893501
YLLRKKEL	8	Unmodified	_YLLRKKEL_					0	0	0		ENST00000360822.7_1_9:123151210-123151465:-|nuORF	ENST00000360822.7_1_9:123151210-123151465:-|nuORF	ENST00000360822.7_1_9:123151210-123151465:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	531.8363037109375	2	531.837134	1061.65972	-0.11879	-6.3177E-05	-4.0158	-0.0021357	-4.1346	-0.0021989	531.8348666348113	104.43	0.44508	104.42	104.25	104.7	-0.0032196					23	10	3	0	0	0	1.0017	1	13331	13331		37.028	1.4102	1	172430			90715	12777	63002	63105	101180	101180					0.1313518564502374
YLLSHRGVD	9	Unmodified	_YLLSHRGVD_					0	0	0			REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	530.2816772460938	2	530.282723	1058.55089	-0.85756	-0.00045475	0.73173	0.00038802	-0.12584	-6.6729E-05	530.2830288664173	55.995	1.0846	55.839	55.211	56.295	-0.15655					60	28	3	0	0	0	0.4752	1	6072	6072		60.972	0.85368	1	3206700	+		90716	27404	63003	63106	101181	101181					0.023959746747550525
YLLTESSKL	9	Unmodified	_YLLTESSKL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	527.2950439453125	2	527.294965	1052.57538	-0.25322	-0.00013352	0.83727	0.00044149	0.58406	0.00030797	527.2953233096802	54.105	0.80192	53.958	53.675	54.477	-0.14724					57	22	3	0	0	0	0.03849	1	5866	5866		134.81	70.603	1	2428800			90717	14730	63004	63107	101182	101182					0.05119190037635235
YLLTESSKL	9	Unmodified	_YLLTESSKL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	527.294965	1052.57538	-0.8016	-0.00042268	1.4311	0.00075463	0.62955	0.00033196	527.2955445038276	54.027	0.69359	54.027	53.799	54.492	0	0.11087	0.0008896	NaN	134.81	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2377800			90718	14730	63004	63107							0.05119190037635235
YLLTESSKL	9	Unmodified	_YLLTESSKL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	527.294965	1052.57538	0.060357	3.1826E-05	0.1246	6.5703E-05	0.18496	9.7529E-05	527.2948818638655	53.794	0.76581	53.89	53.592	54.358	0.095669	-0.026556	-0.00048826	NaN	134.81	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2690500			90719	14730	63004	63107							0.05119190037635235
YLLTESSKL	9	Unmodified	_YLLTESSKL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	527.294965	1052.57538	-1.1811	-0.0006228	0.70935	0.00037404	-0.47178	-0.00024877	527.2952837554095	54.004	0.5881	53.868	53.63	54.218	-0.13617	-0.048199	0.0001284	NaN	134.81	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246540			90720	14730	63004	63107							0.05119190037635235
YLLTESSKL	9	Unmodified	_YLLTESSKL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	527.294965	1052.57538	-0.28237	-0.00014889	-0.16222	-8.5539E-05	-0.4446	-0.00023443	527.2948434706173	54.166	0.57499	53.921	53.591	54.166	-0.2453	0.0047451	-0.00079075	NaN	134.81	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345130			90721	14730	63004	63107							0.05119190037635235
YLLTESSKL	9	Unmodified	_YLLTESSKL_					0	0	0		ENST00000463077.5_1_3:149459310-149470177:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	ENST00000463077.5_1_3:149459310-149470177:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	527.294965	1052.57538	-0.064828	-3.4183E-05	-0.60366	-0.00031831	-0.66849	-0.00035249	527.2945824885636	54.032	0.58664	53.834	53.619	54.206	-0.19739	-0.082114	-0.0012563	NaN	134.81	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441820			90722	14730	63004	63107							0.05119190037635235
YLLTGVILVT	10	Unmodified	_YLLTGVILVT_					0	0	0			REV__ENSG00000170961|ENST00000303924|HAS2	REV__ENSG00000170961|ENST00000303924|HAS2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	547.3236083984375	2	546.339175	1090.6638	-0.80862	-0.00044178	-0.60375	-0.00032985	-1.4124	-0.00077163	546.3388147852299	74.974	0.7368	74.974	74.676	75.413	0					29	18	2	0	0	0	0.03519	1	9198	9198		42.396	0	1	319340	+		90723	26526	63005	63108	101183	101183					0.12209230348116762
YLLVEEIK	8	Unmodified	_YLLVEEIK_					0	0	0		ENST00000274056.11_1_4:164446871-164446979:-|nuORF	ENST00000274056.11_1_4:164446871-164446979:-|nuORF	ENST00000274056.11_1_4:164446871-164446979:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	503.7763977050781	2	503.794601	1005.57465	-0.4585	-0.00023099	-4.178	-0.0021048	-4.6365	-0.0023358	503.79235471949033	73.577	0.22822	73.312	73.217	73.445	-0.26479					7	5	2	0	0	0	0.027866	1	8648	8648		26.796	0	1	50106			90724	11676	63006	63109	101184	101184					0.07208395388568078
YLLVPALFC	9	Unmodified	_YLLVPALFC_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R;ENST00000536092.1_12:7243942-7244984:-|nuORF;ENST00000545466.1_12:7242646-7244984:-|nuORF;ENST00000540394.2_12:7241870-7244269:-|nuORF	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.7943725585938	2	519.788264	1037.56198	0.15947	8.289E-05	2.4938	0.0012962	2.6532	0.0013791	519.7894149712582	80.119	0.95617	79.973	79.616	80.572	-0.146					62	22	4	0	0	0	0.48384	1	9621	9621		60.404	10.379	1	2671400			90725	6745	63007	63110	101185	101185					0.044696607246578424
YLLVPLLN	8	Unmodified	_YLLVPLLN_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	472.7741394042969	2	472.794404	943.574254	-0.91104	-0.00043073	-2.8246	-0.0013355	-3.7357	-0.0017662	472.79286767743173	37.338	0.76522	37.119	36.923	37.688	-0.2195					41	19	3	0	0	0	0.027866	1	2963	2963		28.254	0	1	742290			90726	2315	63008	63111	101186	101186					0.10021020459373631
YLLYHEKI	8	Unmodified	_YLLYHEKI_					0	0	0		ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.763671875	2	539.800217	1077.58588	-0.97935	-0.00052866	-3.6101	-0.0019487	-4.5895	-0.0024774	539.7979655065814	31.349	1.5948	31.418	30.373	31.967	0.06896					63	38	3	0	0	0	0.027866	1	2010	2010		54.765	0	1	667080			90727	7048	63009	63112	101187	101187					0.05019217482708882
YLMANHPAR	9	Unmodified	_YLMANHPAR_					0	0	0			REV__ENST00000491239.2_1_1:27614218-27630434:+|nuORF	REV__ENST00000491239.2_1_1:27614218-27630434:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.349609375	2	536.771468	1071.52838	-0.59087	-0.00031716	-3.8455	-0.0020642	-4.4364	-0.0023813	536.769358868016	87.075	0.92513	86.937	86.661	87.586	-0.13734					39	19	3	0	0	0	0.024487	1	10659	10659		31.955	0	1	509910	+		90728	24183	63010	63113	101188	101188					-0.004519479945201965
YLMDYDGSR	9	Unmodified	_YLMDYDGSR_					0	0	0		ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	ENSG00000188070|ENST00000433688|ZFTA	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2662353515625	2	560.242406	1118.47026	0.55313	0.00030989	2.7707	0.0015523	3.3239	0.0018622	560.2437846103219	83.707	0.67792	83.496	83.221	83.899	-0.21159					25	15	2	0	0	0	0.024487	1	10103	10103		24.203	7.7296	1	238270			90729	9690	63011	63114	101189	101189					-0.08423674430446226
YLMKNDLAE	9	Unmodified	_YLMKNDLAE_					0	0	0		ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	ENSG00000221886|ENST00000408953|FAM200C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.2764282226562	2	548.7708	1095.52705	-0.60305	-0.00033094	-0.4451	-0.00024426	-1.0481	-0.00057519	548.7708086768376	46.929	0.71629	46.776	46.445	47.161	-0.15301					25	17	3	0	0	0	0.024319	1	4631	4631		47.657	0	1	1598700			90730	10618	63012	63115	101190	101190					-0.01689626873940142
YLMPNLCSNF	10	Unmodified	_YLMPNLCSNF_					0	0	0			REV__ENSG00000171049|ENST00000340023|FPR2;REV__ENSG00000171051|ENST00000304748|FPR1	REV__ENSG00000171051|ENST00000304748|FPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.2739868164062	2	601.272652	1200.53075	-1.039	-0.00062474	1.0838	0.00065163	0.044722	2.689E-05	601.2731760875502	69.367	0.70879	69.1	68.827	69.536	-0.26725					43	16	4	0	0	0	0.83673	1	8038	8038		58.23	5.2932	1	1703000	+		90731	26535;26534	63013	63116	101191	101191					-0.06149280371732857
YLMPPIVAL	9	Unmodified	_YLMPPIVAL_					0	0	0			REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	REV__nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	508.7959289550781	2	508.796089	1015.57763	-0.13576	-6.9077E-05	-0.098601	-5.0168E-05	-0.23437	-0.00011924	508.7959594604195	102.56	0.61121	102.43	102.1	102.72	-0.12666					27	13	3	0	0	0	0.80342	1	12758	12758		39.021	0.21535	1	244640	+		90732	28189	63014	63117	101192	101192					0.07045947241726935
YLNASQKF	8	Unmodified	_YLNASQKF_					0	0	0			REV__nc|ENSG00000159842|Q12979-4|ABR	REV__nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	486.22723388671875	2	485.753267	969.491981	0.99414	0.00048291	-1.3046	-0.00063369	-0.31042	-0.00015079	485.752510423993	54.573	0.52554	54.367	54.159	54.685	-0.20613					26	13	3	0	0	0	0.027866	1	5825	5825		30.504	0	1	495120	+		90733	25277	63015	63118	101193	101193					0.006014983804220719
YLNDLIHSV	9	Unmodified	_YLNDLIHSV_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.2859497070312	2	537.284931	1072.55531	-0.46646	-0.00025062	0.40413	0.00021714	-0.06233	-3.3489E-05	537.2852593831217	66.022	0.88134	65.781	65.457	66.338	-0.24145					56	21	4	0	0	0	0.041068	2	7557	7557;7571		132.76	24.67	1	2014300			90734	2917	63016	63119	101194;101195	101194					0.021934390976412033
YLNDLIHSV	9	Unmodified	_YLNDLIHSV_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.28759765625	2	537.284931	1072.55531	-1.1049	-0.00059365	1.1308	0.00060756	0.025889	1.391E-05	537.285641801823	66.014	0.95687	65.801	65.421	66.378	-0.21327					54	23	4	0	0	0	0.062622	2	7549	7549;7561		124.08	44.368	1	1919200			90735	2917	63016	63119	101196;101197	101196					0.021934390976412033
YLNDLIHSV	9	Unmodified	_YLNDLIHSV_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.2868041992188	2	537.284931	1072.55531	-1.1157	-0.00059944	1.2359	0.00066405	0.12025	6.4606E-05	537.2856628851054	66.049	0.90828	65.798	65.437	66.345	-0.25112					56	22	4	0	0	0	0.01896	3	7548	7536;7548;7558		150.36	23.966	1	2046600			90736	2917	63016	63119	101198;101199;101200	101199					0.021934390976412033
YLNEGTSV	8	Unmodified	_YLNEGTSV_					0	0	0			REV__ENSG00000159915|ENST00000683810|ZNF233	REV__ENSG00000159915|ENST00000683810|ZNF233	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	441.7145080566406	2	441.713808	881.413062	-0.54386	-0.00024023	2.8611	0.0012638	2.3172	0.0010236	441.7147328139197	31.443	3.4401	31.443	29.773	33.213	0					251	85	5	0	0	0	0.93274	1	2115	2115		47.916	0	1	2816000	+		90737	25281	63017	63120	101201	101201					-0.0323877364450027
YLNFANLI	8	Unmodified	_YLNFANLI_					0	0	0		ENSG00000132915|ENST00000255266|PDE6A	ENSG00000132915|ENST00000255266|PDE6A	ENSG00000132915|ENST00000255266|PDE6A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	483.7481689453125	2	484.26601	966.517468	0.31061	0.00015042	3.2432	0.0015706	3.5539	0.001721	484.2675059066596	59.035	0.56609	58.854	58.628	59.194	-0.18133					26	13	3	0	0	0	0.027866	1	6506	6506		52.299	0	1	623220			90738	4662	63018	63121	101202	101202					0.03286972902856178
YLNLKHWRFSH	11	Unmodified	_YLNLKHWRFSH_					0	0	0			REV__ENST00000378797.6_2_13:46916808-46917036:-|nuORF	REV__ENST00000378797.6_2_13:46916808-46917036:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	500.3135681152344	3	500.933477	1499.7786	0.35703	0.00017885	-0.22976	-0.00011509	0.12727	6.3756E-05	501.26779303989457	76.235	0.119	76.247	76.166	76.285	0.011635					4	2	2	0	0	0	0.02484	1	9317	9317		12.433	0.97822	1	50420	+		90739	31418	63019	63122	101203	101203					0.0487035260259745
YLNLRPHDI	9	Unmodified	_YLNLRPHDI_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.7286376953125	2	570.811648	1139.60874	-1.4632	-0.00083519	1.5271	0.00087169	0.063958	3.6508E-05	570.8118548556578	51.799	0.58598	51.53	51.321	51.907	-0.26903					28	15	2	0	0	0	0.024323	1	5375	5375		27.882	0	1	484500			90740	9961	63020	63123	101204	101204					0.04452236600195647
YLNRKGIK	8	Unmodified	_YLNRKGIK_					0	0	0		ENSG00000146242|ENST00000369750|TPBG	ENSG00000146242|ENST00000369750|TPBG	ENSG00000146242|ENST00000369750|TPBG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	496.3043518066406	2	496.306001	990.597449	0.40988	0.00020343	-4.3855	-0.0021766	-3.9756	-0.0019731	496.30359497478327	83.166	1.6655	82.997	82.212	83.878	-0.16915					79	38	3	0	0	0	1.0574	1	10032	10032		26.796	2.5934	1	295360			90741	5867	63021	63124	101205	101205					0.10177459296710367
YLNSFPIKR	9	Unmodified	_YLNSFPIKR_					0	0	0			REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	569.3261108398438	2	569.324391	1136.63423	1.4342	0.00081654	2.3203	0.001321	3.7545	0.0021375	569.3256412896054	19.547	0.34694	19.314	19.126	19.473	-0.23345					14	6	3	0	0	0	0.96906	1	415	415		26.693	4.733	1	61684	+		90742	29654	63022	63125	101206	101206					0.07137711122618384
YLNSFPIKR	9	Unmodified	_YLNSFPIKR_					0	0	0			REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	569.324391	1136.63423	0.37896	0.00021575	3.4223	0.0019484	3.8013	0.0021642	569.3262694394991	19.467	0.34632	19.306	19.084	19.43	-0.16079	-0.031254	0.00041363	NaN	26.693	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58123	+		90743	29654	63022	63125							0.07137711122618384
YLNSFPIKR	9	Unmodified	_YLNSFPIKR_					0	0	0			REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	569.324391	1136.63423	0.92676	0.00052763	3.1874	0.0018147	4.1142	0.0023423	569.3260568559472	19.593	0.34929	19.393	19.156	19.505	-0.2001	0.055019	0.00014612	NaN	26.693	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59474	+		90744	29654	63022	63125							0.07137711122618384
YLNSFPIKR	9	Unmodified	_YLNSFPIKR_					0	0	0			REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	REV__ENST00000262291.8_1_17:57917289-57917394:+|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	569.324391	1136.63423	1.4342	0.00081654	2.3203	0.001321	3.7545	0.0021375	569.3256412896054	19.547	0.34694	19.314	19.126	19.473	-0.23345	-0.023765	-0.00084124	NaN	26.693	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61684	+		90745	29654	63022	63125							0.07137711122618384
YLNVLYLF	8	Unmodified	_YLNVLYLF_					0	0	0			REV__nc|ENSG00000136986|Q9BUN8-2|DERL1	REV__nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	522.2999877929688	2	522.791861	1043.56917	-0.33772	-0.00017656	-3.1836	-0.0016644	-3.5214	-0.0018409	522.7897600350125	69.1	0.44949	69.115	68.795	69.245	0.015129					24	11	3	0	0	0	0.027866	1	8240	8240		37.028	10.336	1	356280	+		90746	23715	63023	63126	101207	101207					0.04912716596732025
YLPCYWTI	8	Unmodified	_YLPCYWTI_					0	0	0		ENST00000013125.8_1_14:50943004-50952342:-|nuORF	ENST00000013125.8_1_14:50943004-50952342:-|nuORF	ENST00000013125.8_1_14:50943004-50952342:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	530.2824096679688	2	529.754421	1057.49429	-0.36305	-0.00019233	-3.6649	-0.0019415	-4.0279	-0.0021338	529.7523146940682	55.932	0.6697	55.716	55.409	56.078	-0.21607					37	17	3	0	0	0	0.027866	1	6069	6069		26.796	2.5934	1	659400			90747	11101	63024	63127	101208	101208					-0.032157892061377424
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	576.3085327148438	2	576.308406	1150.60226	-0.28094	-0.00016191	0.17666	0.00010181	-0.10428	-6.0099E-05	576.308418570731	74.654	2.2621	74.654	74.128	76.391	0					141	57	5	0	0	0	0.03666	6	9149	9113;9124;9137;9149;9164;9181		136.27	64.391	1	5140000			90748	4751	63025	63128	101209;101210;101211;101212;101213;101214	101212					0.03298298648792297
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	576.3082885742188	2	576.308406	1150.60226	0.03852	2.2199E-05	-0.16647	-9.5939E-05	-0.12795	-7.374E-05	576.3082043189816	74.889	2.091	74.63	74.158	76.249	-0.25887					127	53	4	0	0	0	0.1158	6	9129	9109;9117;9129;9141;9154;9168		107.01	52.864	1	4621900			90749	4751	63025	63128	101215;101216;101217;101218;101219;101220	101217					0.03298298648792297
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	576.3084106445312	2	576.308406	1150.60226	-0.71389	-0.00041142	0.50629	0.00029178	-0.2076	-0.00011964	576.308600026171	74.667	1.6057	74.676	74.181	75.786	0.0097733					116	40	4	0	0	0	0.077175	7	9085	9038;9048;9059;9072;9085;9098;9110		118.74	63.967	1	4651900			90750	4751	63025	63128	101221;101222;101223;101224;101225;101226;101227	101225					0.03298298648792297
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.3077392578125	2	576.308406	1150.60226	0.13081	7.5385E-05	-0.43758	-0.00025218	-0.30677	-0.0001768	576.3081252726231	74.852	2.3704	74.576	74.089	76.459	-0.27573					149	57	4	0	0	0	0.10174	8	8822	8798;8810;8822;8834;8846;8858;8870;8883		110.12	51.338	1	6452600			90751	4751	63025	63128	101228;101229;101230;101231;101232;101233;101234;101235	101230					0.03298298648792297
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.30810546875	2	576.308406	1150.60226	-0.36424	-0.00020991	0.15741	9.0716E-05	-0.20683	-0.0001192	576.3084459523513	74.846	2.5912	74.582	74.054	76.645	-0.26326					158	62	5	0	0	0	0.062622	8	8863	8814;8826;8838;8850;8863;8874;8898;8913		124.08	67.359	1	6210100			90752	4751	63025	63128	101236;101237;101238;101239;101240;101241;101242;101243	101240					0.03298298648792297
YLPEDFIRV	9	Unmodified	_YLPEDFIRV_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.3082275390625	2	576.308406	1150.60226	0.19174	0.0001105	-0.38933	-0.00022438	-0.19759	-0.00011388	576.3081296545713	74.656	2.6321	74.473	74.005	76.637	-0.18279					164	63	5	0	0	0	0.094442	8	8816	8780;8792;8804;8816;8829;8844;8855;8868		112.41	59.322	1	6083000			90753	4751	63025	63128	101244;101245;101246;101247;101248;101249;101250;101251	101247					0.03298298648792297
YLPEELAAL	9	Unmodified	_YLPEELAAL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF;ENST00000582626.1_1_17:18160183-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.7765808105469	2	509.776408	1017.53826	-0.47714	-0.00024323	0.44956	0.00022918	-0.027575	-1.4057E-05	509.7765658472115	82.629	1.0705	82.629	82.195	83.266	0					37	24	2	0	0	0	0.40179	1	10318	10318		65.803	2.4969	1	1494100			90754	8768	63026	63129	101252	101252					0.030195184918625273
YLPEELAAL	9	Unmodified	_YLPEELAAL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF;ENST00000582626.1_1_17:18160183-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MSMS	OPSCC_39_ClassI_Rep-2	2	509.77691650390625	2	509.776408	1017.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.7	1	82.59	82.09	83.09	-0.11006								0	0	0	0.13191	1	10294	10294		85.359	24.956	1				90755	8768	63026	63129	101253	101253					0.030195184918625273
YLPEELAAL	9	Unmodified	_YLPEELAAL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF;ENST00000582626.1_1_17:18160183-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.77667236328125	2	509.776408	1017.53826	-0.54405	-0.00027734	0.60776	0.00030982	0.063715	3.248E-05	509.77660995848186	82.483	0.85449	82.509	82.147	83.002	0.025711					29	19	2	0	0	0	0.14199	2	10236	10223;10236		101.21	45.707	1	1717900			90756	8768	63026	63129	101254;101255	101255					0.030195184918625273
YLPEITIHI	9	Unmodified	_YLPEITIHI_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	549.279296875	2	549.813325	1097.6121	0.41441	0.00022785	0.13359	7.3447E-05	0.54799	0.00030129	549.8116874681652	64.182	0.50971	64.227	63.939	64.448	0.045502					22	13	3	0	0	0	0.024535	1	7419	7419		33.516	8.9964	1	87147	+		90757	22833	63027	63130	101256	101256					0.06719486654174034
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	538.3045654296875	2	538.305332	1074.59611	0.28965	0.00015592	-1.1834	-0.00063702	-0.89373	-0.0004811	538.3045680256793	85.822	2.156	85.822	85.457	87.613	0					114	50	4	0	0	0	0.016758	3	10762	10750;10762;10773		153.04	48.289	1	7167900			90758	8177	63028	63131	101257;101258;101259	101258					0.0617978041727838
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.3045654296875	2	538.305332	1074.59611	-0.68413	-0.00036827	-0.35441	-0.00019078	-1.0385	-0.00055905	538.3049864237151	85.804	2.112	85.746	85.355	87.467	-0.05761					114	49	4	0	0	0	0.03201	4	10744	10710;10720;10732;10744		139.97	39.707	1	6686500			90759	8177	63028	63131	101260;101261;101262;101263	101263					0.0617978041727838
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	538.3045043945312	2	538.305332	1074.59611	-1.4916	-0.00080292	0.4449	0.00023949	-1.0467	-0.00056343	538.305403072209	85.767	2.467	85.791	85.408	87.875	0.023666					131	58	4	0	0	0	0.016758	3	10673	10661;10673;10685		153.04	65.282	1	6568400			90760	8177	63028	63131	101264;101265;101266	101265					0.0617978041727838
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.3050537109375	2	538.305332	1074.59611	-0.043972	-2.367E-05	-0.29725	-0.00016001	-0.34122	-0.00018368	538.3050088443749	85.843	1.1627	85.648	85.301	86.464	-0.19508					75	26	4	0	0	0	0.071379	2	10400	10390;10400		120.87	21.493	1	1686200			90761	8177	63028	63131	101267;101268	101268					0.0617978041727838
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.3048706054688	2	538.305332	1074.59611	-0.42967	-0.00023129	0.052873	2.8462E-05	-0.3768	-0.00020283	538.3051972759014	85.797	1.1167	85.659	85.326	86.443	-0.13753					73	25	4	0	0	0	0.086035	2	10383	10383;10395		115.49	48.532	1	1508200			90762	8177	63028	63131	101269;101270	101269					0.0617978041727838
YLPGIRGPPLR	11	Unmodified	_YLPGIRGPPLR_					0	0	0		ENST00000594859.5_1_19:18723732-18728463:+|nuORF	ENST00000594859.5_1_19:18723732-18728463:+|nuORF	ENST00000594859.5_1_19:18723732-18728463:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	619.8673706054688	2	619.87204	1237.72953	-1.5196	-0.00094193	-3.1095	-0.0019275	-4.6291	-0.0028694	619.87000320551	104.9	0.59966	104.77	104.47	105.07	-0.13099					38	19	3	0	0	0	1.0442	1	13079	13079		26.693	5.746	1	162010			90763	17413	63029	63132	101271	101271					0.1201706431365892
YLPGMTISY	9	Oxidation (M)	_YLPGM(Oxidation (M))TISY_		YLPGM(1)TISY		YLPGM(97)TISY	0	0	1		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	530.7747192382812	2	530.754618	1059.49468	-0.12506	-6.6376E-05	-1.8942	-0.0010053	-2.0192	-0.0010717	530.7535419781791	57.179	0.25607	56.955	56.814	57.07	-0.2248					8	6	2	0	0	0	0.022924	1	6219	6219		97.473	34.166	1	108470			90764	10274	63030	63133	101272	101272		435			-0.032684142769085156
YLPKNQICQVL	11	Unmodified	_YLPKNQICQVL_					0	0	0			REV__ENSG00000182718|ENST00000451270|ANXA2	REV__ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	440.24346923828125	3	440.244441	1317.71149	-0.86083	-0.00037898	-1.2119	-0.00053353	-2.0727	-0.00091251	440.2438218030675	25.414	0.84206	25.187	24.887	25.729	-0.22683					46	19	3	0	0	0	1.0327	1	1205	1205		29.551	1.9068	1	1057900	+		90765	27505	63031	63134	101273	101273					0.06534561276612294
YLPKNQICQVL	11	Unmodified	_YLPKNQICQVL_					0	0	0			REV__ENSG00000182718|ENST00000451270|ANXA2	REV__ENSG00000182718|ENST00000451270|ANXA2	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	440.244441	1317.71149	0.46097	0.00020294	2.9626	0.0013043	3.4236	0.0015072	440.24587198535863	24.966	0.26349	25.044	24.869	25.132	0.078344	-0.051058	0.0058444	NaN	29.551	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31231	+		90766	27505	63031	63134							0.06534561276612294
YLPKNQICQVL	11	Unmodified	_YLPKNQICQVL_					0	0	0			REV__ENSG00000182718|ENST00000451270|ANXA2	REV__ENSG00000182718|ENST00000451270|ANXA2	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		3	440.244441	1317.71149	-0.86083	-0.00037898	-1.2119	-0.00053353	-2.0727	-0.00091251	440.2438218030675	25.414	0.84206	25.187	24.887	25.729	-0.22683	0.091943	0.00033099	NaN	29.551	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057900	+		90767	27505	63031	63134							0.06534561276612294
YLPKNQICQVL	11	Unmodified	_YLPKNQICQVL_					0	0	0			REV__ENSG00000182718|ENST00000451270|ANXA2	REV__ENSG00000182718|ENST00000451270|ANXA2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	440.244441	1317.71149	-0.2813	-0.00012384	-1.7462	-0.00076876	-2.0275	-0.0008926	440.2435880610227	25.225	1.0695	25.054	24.344	25.413	-0.17078	-0.040885	-0.00037467	NaN	29.551	65	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	802300	+		90768	27505	63031	63134							0.06534561276612294
YLPPATQVV	9	Unmodified	_YLPPATQVV_					0	0	0		ENST00000575978.1_1_17:78112818-78113115:-|nuORF;ENSG00000141543|ENST00000649764|EIF4A3	ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	494.2748718261719	2	494.279118	986.543683	-0.49236	-0.00024336	-0.52735	-0.00026066	-1.0197	-0.00050402	494.27843635411904	62.426	0.53762	62.489	62.272	62.81	0.062767					33	13	3	0	0	0	0.39228	1	7184	7184		66.429	3.4509	1	1252200			90769	17105	63032	63135	101274	101274					0.049872420743326984
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	482.76068115234375	2	482.760561	963.506569	0.19266	9.3007E-05	-0.0045693	-2.2059E-06	0.18809	9.0801E-05	482.760366535382	77.612	1.8258	77.612	77.167	78.993	0					101	43	3	0	0	0	0.20304	3	9582	9582;9593;9606		88.643	14.668	1	1986500			90770	1476;13528	63033	63136	101275;101276;101277	101275					0.02335570528578046
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	482.7603759765625	2	482.760561	963.506569	0.50987	0.00024614	-0.40025	-0.00019322	0.10962	5.292E-05	482.76011343632797	77.782	1.8271	77.571	77.037	78.864	-0.21088					96	43	4	0	0	0	0.55828	1	9576	9576		55.504	16.698	1	1969600			90771	1476;13528	63033	63136	101278	101278					0.02335570528578046
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7606201171875	2	482.760561	963.506569	-0.476	-0.0002298	0.65825	0.00031778	0.18225	8.7983E-05	482.76069286081497	77.64	1.9198	77.655	76.979	78.899	0.014565					104	45	4	0	0	0	0.14199	5	9500	9500;9512;9523;9542;9553		101.21	43.759	1	1743700			90772	1476;13528	63033	63136	101279;101280;101281;101282;101283	101279					0.02335570528578046
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	482.761474609375	2	482.760561	963.506569	0.22546	0.00010884	-0.13518	-6.5258E-05	0.090288	4.3587E-05	482.7603056303973	77.854	1.4953	77.592	77.141	78.636	-0.26202					85	34	3	0	0	0	0.15889	5	9269	9245;9255;9269;9280;9292		97.473	26.095	1	2040700			90773	1476;13528	63033	63136	101284;101285;101286;101287;101288	101286					0.02335570528578046
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	482.7613525390625	2	482.760561	963.506569	0.68915	0.00033269	-0.52502	-0.00025346	0.16413	7.9236E-05	482.7600770282274	77.789	1.5707	77.547	77.112	78.683	-0.24232					90	36	4	0	0	0	0.20304	4	9287	9265;9276;9287;9299		88.643	19.856	1	1920200			90774	1476;13528	63033	63136	101289;101290;101291;101292	101291					0.02335570528578046
YLPPGFLSA	9	Unmodified	_YLPPGFLSA_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	482.7615051269531	2	482.760561	963.506569	0.058497	2.824E-05	-0.1512	-7.2992E-05	-0.092699	-4.4751E-05	482.7602733687011	77.677	1.3679	77.515	77.14	78.508	-0.16196					74	31	3	0	0	0	0.14199	3	9260	9250;9260;9273		101.21	40.918	1	1744400			90775	1476;13528	63033	63136	101293;101294;101295	101294					0.02335570528578046
YLPPRDTYTH	10	Unmodified	_YLPPRDTYTH_					0	0	0		ENST00000333145.9_1_2:113993130-114016997:+|nuORF	ENST00000333145.9_1_2:113993130-114016997:+|nuORF	ENST00000333145.9_1_2:113993130-114016997:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	631.7874755859375	2	631.811845	1261.60914	-1.6219	-0.0010248	-3.1518	-0.0019914	-4.7738	-0.0030161	632.3109338004986	54.001	0.14822	53.865	53.779	53.928	-0.13617					10	4	3	0	0	0	0.03519	1	5707	5707		79.451	13.022	1	162160			90776	12367	63034	63137	101296	101296					-0.011203884706219469
YLPVTSLLN	9	Unmodified	_YLPVTSLLN_					0	0	0		MUC16|p.S8293Y|1|0.16|ENSG00000181143|chr19:8951892-8951892|G/T|missense_variant	MUC16|p.S8293Y|1|0.16|ENSG00000181143|chr19:8951892-8951892|G/T|missense_variant	MUC16|p.S8293Y|1|0.16|ENSG00000181143|chr19:8951892-8951892|G/T|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	509.82049560546875	2	510.292225	1018.5699	0.044906	2.2915E-05	-3.5741	-0.0018238	-3.5292	-0.0018009	510.2906864440297	107.37	0.41585	107.36	107.03	107.44	-0.003479					16	13	2	0	0	0	0.024381	1	13702	13702		37.159	11.709	1	137280			90777	18001	63035	63138	101297	101297					0.06135511245827274
YLQEIQTQL	9	Unmodified	_YLQEIQTQL_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	568.300048828125	2	568.303321	1134.59209	-0.94847	-0.00053902	3.2976	0.001874	2.3491	0.001335	568.3053820421599	66.907	0.62276	66.931	66.728	67.35	0.023911					33	14	3	0	0	0	0.024277	1	7885	7885		78.264	0	1	679180			90778	5248	63036	63139	101298	101298					0.030176909235706262
YLQEKSLI	8	Unmodified	_YLQEKSLI_					0	0	0			REV__ENSG00000163618|ENST00000383710|CADPS;REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	REV__nc|ENSG00000163618|Q9ULU8-3|CADPS	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.28558349609375	2	497.2844	992.554247	-0.16826	-8.3675E-05	0.026491	1.3174E-05	-0.14177	-7.0501E-05	497.28431439566583	35.781	0.86925	35.568	35.115	35.985	-0.21246					62	23	4	0	0	0	0.845	1	2740	2740		55.504	2.1528	1	3366600	+		90779	25601;36854	63037	63140	101299	101299					0.057672247287769096
YLQHFGFAI	9	Unmodified	_YLQHFGFAI_					0	0	0			REV__nc|ENSG00000142655|O75381-2|PEX14	REV__nc|ENSG00000142655|O75381-2|PEX14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	549.2791137695312	2	548.284734	1094.55492	0.0075033	4.114E-06	2.7822	0.0015254	2.7897	0.0015296	548.7873248189479	77.854	0.49597	77.643	77.418	77.914	-0.21087					14	11	2	0	0	0	0.024466	1	9611	9611		33.516	9.9929	1	96325	+		90780	24174	63038	63141	101300	101300					0.011420641684708244
YLQHLQELY	9	Unmodified	_YLQHLQELY_					0	0	0			REV__nc|ENSG00000168610|P40763-3|STAT3	REV__nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	603.8107299804688	2	603.811313	1205.60807	-0.066896	-4.0393E-05	-0.43534	-0.00026286	-0.50223	-0.00030325	603.8110317832021	63.171	1.7601	62.912	62.663	64.423	-0.25824					106	44	5	0	0	0	0.014013	1	7119	7119		166.78	0.104	1	14387000	+		90781	26276	63039	63142	101301	101301					0.013493971604930266
YLQNEVFGL	9	Unmodified	_YLQNEVFGL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	541.77978515625	2	541.779482	1081.54441	0.032989	1.7873E-05	-0.83322	-0.00045142	-0.80023	-0.00043355	541.7789416012382	80.679	0.57216	80.473	80.215	80.787	-0.20632					34	13	4	0	0	0	0.33245	1	9691	9691		71.296	7.0884	1	528500			90782	2053	63040	63143	101302	101302					0.0069003672338112665
YLQQDSDSW	9	Unmodified	_YLQQDSDSW_					0	0	0		ENST00000301068.10_1_12:49460787-49463524:-|nuORF	ENST00000301068.10_1_12:49460787-49463524:-|nuORF	ENST00000301068.10_1_12:49460787-49463524:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	571.310791015625	2	571.24346	1140.47237	0.17243	9.85E-05	2.7965	0.0015975	2.9689	0.001696	571.24498243395	74.814	0.12086	74.551	74.489	74.61	-0.26326					4	2	2	0	0	0	0.024436	1	8837	8837		47.916	7.1374	1	66833			90783	11921	63041	63144	101303	101303					-0.09224922421003612
YLQSIGFVLV	10	Unmodified	_YLQSIGFVLV_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	569.2839965820312	2	569.828975	1137.6434	0.35555	0.0002026	0.66557	0.00037926	1.0211	0.00058186	569.8293926653953	81.48	0.33193	81.251	81.147	81.479	-0.2289					10	7	2	0	0	0	0.03519	1	9799	9799		57.811	15.415	1	138520			90784	10106	63042	63145	101304	101304					0.08008059688290814
YLQSIILVP	9	Unmodified	_YLQSIILVP_					0	0	0		ENST00000383168.8_2_18:24440791-24441129:-|nuORF	ENST00000383168.8_2_18:24440791-24441129:-|nuORF	ENST00000383168.8_2_18:24440791-24441129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2678833007812	2	523.318243	1044.62193	-0.57024	-0.00029842	-2.2511	-0.001178	-2.8213	-0.0014764	523.3170755979488	43.245	0.36343	43.106	42.921	43.284	-0.13929					14	9	2	0	0	0	0.024477	1	4031	4031		27.882	6.9353	1	99661			90785	13365	63043	63146	101305	101305					0.10140674659578508
YLQSIILVP	9	Unmodified	_YLQSIILVP_					0	0	0		ENST00000383168.8_2_18:24440791-24441129:-|nuORF	ENST00000383168.8_2_18:24440791-24441129:-|nuORF	ENST00000383168.8_2_18:24440791-24441129:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2680053710938	2	523.318243	1044.62193	0.33612	0.0001759	-3.2883	-0.0017208	-2.9522	-0.0015449	523.3164399671371	43.253	0.47528	43.284	42.974	43.45	0.030827					14	12	2	0	0	0	0.024436	1	3973	3973		38.806	14.603	1	117160			90786	13365	63043	63146	101306	101306					0.10140674659578508
YLQVILEV	8	Unmodified	_YLQVILEV_					0	0	0		ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	ENSG00000158481|ENST00000368170|CD1C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	488.25311279296875	2	488.789318	975.564084	-0.52638	-0.00025729	-3.4243	-0.0016738	-3.9507	-0.0019311	488.78767517414894	28.254	1.335	28.335	27.832	29.167	0.080811					43	32	2	0	0	0	0.027866	1	1668	1668		24.203	0	1	275740			90787	6675	63044	63147	101307	101307					0.075324127341446
YLRADSQEP	9	Unmodified	_YLRADSQEP_					0	0	0		nc|ENSG00000141424|Q13433-2|SLC39A6;ENSG00000141424|ENST00000269187|SLC39A6	nc|ENSG00000141424|Q13433-2|SLC39A6	nc|ENSG00000141424|Q13433-2|SLC39A6	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	539.2457885742188	2	539.76182	1077.50909	-1.3896	-0.00075005	0.91696	0.00049494	-0.47263	-0.00025511	539.762219657804	35.267	0.65504	35.081	34.76	35.415	-0.18675					41	16	3	0	0	0	0.024427	1	2688	2688		42.396	13.247	1	966060			90788	5488	63045	63148	101308	101308					-0.02656625804434043
YLRCITFL	8	Carbamidomethyl (C)	_YLRC(Carbamidomethyl (C))ITFL_	YLRC(1)ITFL		YLRC(68)ITFL		0	1	0		ENSG00000184445|ENST00000333479|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF;nc|ENSG00000184445|P50748-2|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	543.8294677734375	2	543.294245	1084.57394	-0.24083	-0.00013084	0.58756	0.00031922	0.34672	0.00018837	543.2944038227432	74.681	1.4635	74.405	74.308	75.772	-0.27573					85	35	3	0	0	0	0.027866	1	8811	8811		68.485	32.866	1	1293500			90789	9339	63046	63149	101309	101309	119				0.0350327746784842
YLRCITFL	8	Carbamidomethyl (C)	_YLRC(Carbamidomethyl (C))ITFL_	YLRC(1)ITFL		YLRC(58)ITFL		0	1	0		ENSG00000184445|ENST00000333479|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF;nc|ENSG00000184445|P50748-2|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	543.2954711914062	2	543.294245	1084.57394	-0.042985	-2.3354E-05	-0.26246	-0.00014259	-0.30545	-0.00016595	543.2941360986251	72.586	0.59575	72.321	72.042	72.638	-0.26479					25	13	2	0	0	0	0.81662	1	8503	8503		57.811	11.859	1	2194400			90790	9339	63046	63149	101310	101310	119				0.0350327746784842
YLRDAWGI	8	Unmodified	_YLRDAWGI_					0	0	0		ENSG00000115474|ENST00000233826|KCNJ13;KCNJ13|p.C234Dfs*9|1|0.08|ENSG00000115474|chr2:232768575-232768576|-/CC|frameshift_variant;nc|ENSG00000115474|O60928-2|KCNJ13	ENSG00000115474|ENST00000233826|KCNJ13	ENSG00000115474|ENST00000233826|KCNJ13	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2627258300781	2	497.261259	992.507966	-0.59944	-0.00029808	3.7068	0.0018432	3.1073	0.0015452	497.26295675594787	48.648	6.2116	48.373	45.762	51.974	-0.27598					392	167	4	0	0	0	0.78609	1	4776	4776		60.294	0	1	7013000			90791	3452	63047	63150	101311	101311					0.01141204617317726
YLRDKFVS	8	Unmodified	_YLRDKFVS_					0	0	0			REV__ENSG00000068383|ENST00000368594|INPP5A	REV__ENSG00000068383|ENST00000368594|INPP5A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	514.2952880859375	2	514.282192	1026.54983	0.21343	0.00010976	0.76228	0.00039203	0.97571	0.00050179	514.2821234001614	70.193	0.24029	69.979	69.855	70.096	-0.21425					9	5	2	0	0	0	0.027866	1	8177	8177		60.972	25.354	1	79659	+		90792	20377	63048	63151	101312	101312					0.03761760305860662
YLRDKFVS	8	Unmodified	_YLRDKFVS_					0	0	0			REV__ENSG00000068383|ENST00000368594|INPP5A	REV__ENSG00000068383|ENST00000368594|INPP5A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	514.282192	1026.54983	-0.25809	-0.00013273	1.8843	0.00096907	1.6262	0.00083634	514.2836347202855	70.348	0.3281	70.076	69.827	70.155	-0.27184	0.048647	0.00084626	NaN	34.173	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59413	+		90793	20377	63048	63151							0.03761760305860662
YLRDKFVSL	9	Unmodified	_YLRDKFVSL_					0	0	0			REV__ENSG00000068383|ENST00000368594|INPP5A	REV__ENSG00000068383|ENST00000368594|INPP5A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	570.8226928710938	2	570.824224	1139.63389	-1.5795	-0.00090164	-2.8235	-0.0016117	-4.4031	-0.0025134	570.8226706889576	51.715	1.7414	51.802	51.411	53.152	0.087006					142	46	6	0	0	0	0.70156	1	5486	5486		45.972	3.108	1	14874000	+		90794	20377	63049	63152	101313	101313					0.06966291402773095
YLRDNELFTK	10	Unmodified	_YLRDNELFTK_					0	0	0			REV__ENSG00000163491|ENST00000691995|NEK10	REV__ENSG00000163491|ENST00000691995|NEK10	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	432.74462890625	3	433.562827	1297.66665	-0.052075	-2.2578E-05	-1.6952	-0.00073496	-1.7472	-0.00075754	433.56223393111765	28.145	0.5135	27.994	27.847	28.36	-0.15195					16	12	2	0	0	0	0.03519	1	1594	1594		17.167	0	1	110810	+		90795	25574	63050	63153	101314	101314					0.029724537349238744
YLRFITTL	8	Unmodified	_YLRFITTL_					0	0	0		ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENST00000468439.2_1_3:132106687-132107131:+|nuORF	ENST00000468439.2_1_3:132106687-132107131:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.2874145507812	2	513.80276	1025.59097	-0.091294	-4.6907E-05	0.44988	0.00023115	0.35859	0.00018424	513.8028075051236	71.649	0.73737	71.66	71.358	72.095	0.010735					30	19	2	0	0	0	0.027866	1	8651	8651		35.618	0	1	789740			90796	14870	63051	63154	101315	101315					0.0791952134532039
YLRQLKEM	8	Unmodified	_YLRQLKEM_					0	0	0			REV__ENST00000558178.1_15:83145996-83146259:-|nuORF	REV__ENST00000558178.1_15:83145996-83146259:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	540.2906494140625	2	540.797152	1079.57975	-0.49755	-0.00026908	2.5028	0.0013535	2.0053	0.0010845	540.7987529710928	54.271	0.45651	54.124	53.921	54.378	-0.14724					30	12	3	0	0	0	0.027866	1	5867	5867		37.159	7.3176	1	813520	+		90797	35088	63052	63155	101316	101316					0.043143759795157166
YLRRKPQS	8	Unmodified	_YLRRKPQS_					0	0	0			REV__ENST00000487066.5_1_17:16344415-16344739:+|nuORF	REV__ENST00000487066.5_1_17:16344415-16344739:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	524.2689819335938	2	524.306532	1046.59851	-1.0654	-0.00055862	-0.53038	-0.00027808	-1.5958	-0.0008367	524.30630257119	35.007	1.0289	34.985	34.357	35.386	-0.021767					43	26	2	0	0	0	0.027866	1	2672	2672		21.96	7.095	1	147440	+		90798	33600	63053	63156	101317	101317					0.07707673665595394
YLRRKPQS	8	Unmodified	_YLRRKPQS_					0	0	0			REV__ENST00000487066.5_1_17:16344415-16344739:+|nuORF	REV__ENST00000487066.5_1_17:16344415-16344739:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2693481445312	2	524.306532	1046.59851	-0.44399	-0.00023279	-1.4486	-0.00075951	-1.8926	-0.00099229	524.3048680508099	35.216	1.0651	35.26	34.551	35.616	0.04406					39	27	2	0	0	0	0.027866	1	2640	2640		35.618	14.671	1	192950	+		90799	33600	63053	63156	101318	101318					0.07707673665595394
YLRRLDLV	8	Unmodified	_YLRRLDLV_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.26904296875	2	524.319109	1046.62366	-1.2756	-0.00066882	-2.5601	-0.0013423	-3.8357	-0.0020111	524.3174072788519	35.206	0.43542	35.206	34.944	35.38	0					20	11	2	0	0	0	0.027866	1	2687	2687		24.203	11.244	1	216390	+		90800	20383	63054	63157	101319	101319					0.10221728468172842
YLRRLDLV	8	Unmodified	_YLRRLDLV_					0	0	0			REV__ENSG00000068654|ENST00000263857|POLR1A	REV__ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.269287109375	2	524.319109	1046.62366	-0.43858	-0.00022996	0.29581	0.0001551	-0.14277	-7.4856E-05	524.3193533806384	35.104	0.59081	35.148	34.868	35.459	0.04406					22	15	3	0	0	0	0.027866	1	2602	2602		31.955	13.63	1	223950	+		90801	20383	63054	63157	101320	101320					0.10221728468172842
YLRRRFSP	8	Unmodified	_YLRRRFSP_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.2915649414062	2	547.814525	1093.6145	-0.23642	-0.00012951	2.2364	0.0012251	2	0.0010956	547.815743746523	72.479	0.90324	72.479	72.131	73.034	0					55	21	4	0	0	0	0.027866	1	8799	8799		38.806	0	1	1369500			90802	1177	63055	63158	101321	101321					0.07143379902527158
YLRVSTVTVL	10	Unmodified	_YLRVSTVTVL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	575.8429565429688	2	575.845156	1149.67576	0.50468	0.00029062	-4.1927	-0.0024144	-3.6881	-0.0021238	575.8425508019359	89.03	2.446	89.008	87.587	90.033	-0.021645					176	58	4	0	0	0	0.80817	2	11165	11165;11207		60.118	6.9645	1	1452500			90803	9763	63056	63159	101322;101323	101322					0.10690847091291289
YLRVSTVTVL	10	Unmodified	_YLRVSTVTVL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8433837890625	2	575.845156	1149.67576	-0.082095	-4.7274E-05	-3.6826	-0.0021206	-3.7647	-0.0021679	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	1.0616	1	11214	11214		37.812	0.65241	1	1475600			90804	9763	63056	63159	101324	101324					0.10690847091291289
YLRVSTVTVL	10	Unmodified	_YLRVSTVTVL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.8425903320312	2	575.845156	1149.67576	-0.59889	-0.00034487	-3.2038	-0.0018449	-3.8027	-0.0021898	575.8431704653221	89.07	1.6712	88.906	88.304	89.975	-0.16348					133	39	4	0	0	0	0.66532	1	10834	10834		69.628	0	1	2151700			90805	9763	63056	63159	101325	101325					0.10690847091291289
YLRVSTVTVL	10	Unmodified	_YLRVSTVTVL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	575.8432006835938	2	575.845156	1149.67576	-0.51071	-0.00029409	-3.3307	-0.0019179	-3.8414	-0.002212	575.843056337274	89.151	1.8483	89.023	88.198	90.046	-0.12774					148	43	4	0	0	0	0.94316	2	10841	10830;10841		51.193	5.7052	1	2085600			90806	9763	63056	63159	101326;101327	101327					0.10690847091291289
YLRVVRVV	8	Unmodified	_YLRVVRVV_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000509411.5_1_5:147774339-147778706:+|nuORF;ENST00000508326.5_1_5:147774339-147782111:+|nuORF	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.32440185546875	2	502.324194	1002.63383	-0.1543	-7.7507E-05	-0.017668	-8.875E-06	-0.17197	-8.6382E-05	502.3240339782001	17.995	0.54663	17.789	17.564	18.11	-0.20669					29	10	4	0	0	0	1.0574	1	251	251		19.36	0	1	509380			90807	5845	63057	63160	101328	101328					0.13262336193429292
YLRWWQLQDSN	11	Unmodified	_YLRWWQLQDSN_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	502.75396728515625	3	503.58088	1507.72081	-0.052304	-2.6339E-05	2.0996	0.0010573	2.0473	0.001031	503.58185226355397	28.431	0.57844	28.512	28.248	28.826	0.080811					21	13	2	0	0	0	0.024816	1	1634	1634		16.53	3.0219	1	121880			90808	8371	63058	63161	101329	101329					-0.012739541134806132
YLRWWQLQDSN	11	Unmodified	_YLRWWQLQDSN_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		3	503.58088	1507.72081	-1.0406	-0.00052404	3.6376	0.0018318	2.5969	0.0013078	503.5823221457256	28.625	0.45539	28.625	28.449	28.904	0	0.024667	0.0014807	NaN	16.53	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107560			90809	8371	63058	63161							-0.012739541134806132
YLRWWQLQDSN	11	Unmodified	_YLRWWQLQDSN_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	503.58088	1507.72081	-0.62535	-0.00031491	2.6687	0.0013439	2.0434	0.001029	503.9166545862801	28.669	0.54774	28.665	28.416	28.964	-0.0042019	0.064116	1.7074E-05	NaN	16.53	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121430			90810	8371	63058	63161							-0.012739541134806132
YLSALRYY	8	Unmodified	_YLSALRYY_					0	0	0		sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	sp|P03190|RIR1_EBVB9Ribonucleoside-diphosphatereductaselargesubunitOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=RIR1PE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2359619140625	2	524.776742	1047.53893	-0.79642	-0.00041794	-2.1952	-0.001152	-2.9916	-0.0015699	525.2772623841006	25.548	0.32965	25.322	25.105	25.434	-0.22683					9	7	2	0	0	0	0.027866	1	1241	1241		44.531	0	1	34055			90811	37922	63059	63162	101330	101330					0.01706357931561797
YLSDLFTTL	9	Unmodified	_YLSDLFTTL_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000162989|ENST00000295101|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	536.78173828125	2	536.78169	1071.54883	-0.56525	-0.00030341	0.44994	0.00024152	-0.1153	-6.1893E-05	536.7817822176067	95.096	0.90372	95.096	94.745	95.648	0					46	20	3	0	0	0	0.17455	3	12088	12088;12100;12113		94.006	22.381	1	1159400			90812	3816	63060	63163	101331;101332;101333	101331					0.01591501146299379
YLSDLFTTL	9	Unmodified	_YLSDLFTTL_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000162989|ENST00000295101|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	536.7815551757812	2	536.78169	1071.54883	-0.37233	-0.00019986	0.35018	0.00018797	-0.022149	-1.1889E-05	536.7817590232619	94.976	1.0778	94.979	94.695	95.772	0.0033798					48	24	3	0	0	0	0.11848	3	12053	12053;12065;12079		106.42	39.795	1	1296700			90813	3816	63060	63163	101334;101335;101336	101334					0.01591501146299379
YLSDLFTTL	9	Unmodified	_YLSDLFTTL_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000162989|ENST00000295101|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	536.781494140625	2	536.78169	1071.54883	-0.54959	-0.00029501	0.614	0.00032959	0.064411	3.4575E-05	536.7818472502593	95.09	1.1232	95.094	94.704	95.827	0.0041199					63	25	3	0	0	0	0.13494	4	12024	12012;12024;12037;12050		102.77	24.547	1	1147800			90814	3816	63060	63163	101337;101338;101339;101340	101338					0.01591501146299379
YLSDLFTTL	9	Unmodified	_YLSDLFTTL_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000162989|ENST00000295101|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	536.78169	1071.54883	-0.60389	-0.00032416	0.35996	0.00019322	-0.24394	-0.00013094	536.7816655875262	94.999	0.5609	94.862	94.594	95.155	-0.1371	-0.11139	-5.8917E-05	NaN	106.42	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91164			90815	3816	63060	63163							0.01591501146299379
YLSDLFTTL	9	Unmodified	_YLSDLFTTL_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000162989|ENST00000295101|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	536.78169	1071.54883	0.13526	7.2603E-05	-0.19654	-0.0001055	-0.061284	-3.2896E-05	536.7815213794062	94.986	0.51846	94.864	94.641	95.16	-0.12251	-0.10996	-0.00065635	NaN	106.42	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142740			90816	3816	63060	63163							0.01591501146299379
YLSDLFTTL	9	Unmodified	_YLSDLFTTL_					0	0	0		nc|ENSG00000162989|P48549-2|KCNJ3;ENSG00000120457|ENST00000529694|KCNJ5;ENSG00000162989|ENST00000295101|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	536.78169	1071.54883	-0.84472	-0.00045343	0.80943	0.00043449	-0.035289	-1.8942E-05	536.7819756208589	95.099	0.51855	94.947	94.668	95.186	-0.15186	-0.026541	0.00042362	NaN	106.42	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131890			90817	3816	63060	63163							0.01591501146299379
YLSDSHFIP	9	Unmodified	_YLSDSHFIP_					0	0	0		nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3;PTPN3|p.D179N|1|0.2|ENSG00000070159|chr9:109438166-109438166|C/T|missense_variant	nc|ENSG00000070159|P26045-3|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.2459106445312	2	539.763832	1077.51311	-0.59628	-0.00032185	-3.567	-0.0019254	-4.1633	-0.0022472	539.7618181208845	35.396	0.66002	35.181	34.874	35.534	-0.21555					35	16	3	0	0	0	0.024412	1	2730	2730		40.573	13.88	1	873680			90818	1418	63061	63164	101341	101341					-0.022545363107155936
YLSEEVQAV	9	Unmodified	_YLSEEVQAV_					0	0	0		ENST00000496047.5_1_2:85872080-85873002:+|nuORF;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	519.2606201171875	2	519.261122	1036.50769	-0.43083	-0.00022371	0.74505	0.00038688	0.31422	0.00016316	519.2612705859146	57.619	1.765	57.619	57.305	59.07	0					97	47	4	0	0	0	0.03201	3	6488	6478;6488;6501		139.97	38.37	1	6233200			90819	7874	63062	63165	101342;101343;101344	101343					-0.00910259893203147
YLSEEVQAV	9	Unmodified	_YLSEEVQAV_					0	0	0		ENST00000496047.5_1_2:85872080-85873002:+|nuORF;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	519.2620849609375	2	519.261122	1036.50769	-0.29137	-0.0001513	0.91553	0.0004754	0.62417	0.00032411	519.2613996630357	57.88	1.5708	57.705	57.307	58.878	-0.1749					84	42	4	0	0	0	0.03849	3	6494	6484;6494;6517		134.81	33.21	1	5913500			90820	7874	63062	63165	101345;101346;101347	101346					-0.00910259893203147
YLSEEVQAV	9	Unmodified	_YLSEEVQAV_					0	0	0		ENST00000496047.5_1_2:85872080-85873002:+|nuORF;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	519.2604370117188	2	519.261122	1036.50769	-0.86621	-0.00044979	1.3595	0.00070596	0.49333	0.00025617	519.2616594711949	57.524	1.5796	57.619	57.243	58.823	0.095306					89	42	3	0	0	0	0.077175	4	6412	6380;6388;6398;6412		118.74	44.198	1	6058600			90821	7874	63062	63165	101348;101349;101350;101351	101351					-0.00910259893203147
YLSEEVQAV	9	Unmodified	_YLSEEVQAV_					0	0	0		ENST00000496047.5_1_2:85872080-85873002:+|nuORF;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	519.2614135742188	2	519.261122	1036.50769	-0.54986	-0.00028552	0.99705	0.00051773	0.44719	0.00023221	519.2614966980939	57.911	0.62949	57.733	57.473	58.103	-0.17775					26	15	2	0	0	0	0.12602	2	6348	6348;6359		104.75	30.492	1	2940400			90822	7874	63062	63165	101352;101353	101352					-0.00910259893203147
YLSEEVQAV	9	Unmodified	_YLSEEVQAV_					0	0	0		ENST00000496047.5_1_2:85872080-85873002:+|nuORF;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	519.26025390625	2	519.261122	1036.50769	0.17878	9.2832E-05	0.099567	5.1701E-05	0.27834	0.00014453	519.2611414139045	57.92	0.57126	57.73	57.407	57.978	-0.19018					23	14	2	0	0	0	0.027092	2	6348	6348;6358		143.89	47.696	1	3466000			90823	7874	63062	63165	101354;101355	101354					-0.00910259893203147
YLSEEVQAV	9	Unmodified	_YLSEEVQAV_					0	0	0		ENST00000496047.5_1_2:85872080-85873002:+|nuORF;ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	ENST00000496047.5_1_2:85872080-85873002:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	519.2595825195312	2	519.261122	1036.50769	0.052825	2.743E-05	0.3673	0.00019073	0.42013	0.00021816	519.2611826974494	58.034	1.2064	57.801	57.501	58.708	-0.23363					42	29	2	0	0	0	0.096521	3	6353	6342;6353;6361		111.65	26.733	1	2710000			90824	7874	63062	63165	101356;101357;101358	101357					-0.00910259893203147
YLSEKQFFA	9	Unmodified	_YLSEKQFFA_					0	0	0		ENSG00000115993|ENST00000332624|TRAK2	ENSG00000115993|ENST00000332624|TRAK2	ENSG00000115993|ENST00000332624|TRAK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	566.2666625976562	2	566.787307	1131.56006	-0.085205	-4.8293E-05	-0.48669	-0.00027585	-0.5719	-0.00032414	566.7865005396344	69.684	0.41558	69.461	69.307	69.722	-0.22245					16	9	2	0	0	0	0.024535	1	8086	8086		25.45	0	1	153570			90825	3507	63063	63166	101359	101359					-0.00045676759555135504
YLSEKVLAA	9	Unmodified	_YLSEKVLAA_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	497.2838134765625	2	497.2844	992.554247	-0.43512	-0.00021638	-0.2957	-0.00014705	-0.73082	-0.00036343	497.2840757530978	49.307	1.2516	49.206	48.88	50.131	-0.1008					65	32	4	0	0	0	0.32811	2	4955	4943;4955		71.877	10.906	1	4366800			90826	9337	63064	63167	101360;101361	101361					0.05767224728754172
YLSEKVLAA	9	Unmodified	_YLSEKVLAA_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	497.2832946777344	2	497.2844	992.554247	0.00010335	5.1393E-08	-0.64465	-0.00032058	-0.64455	-0.00032052	497.2838995959278	49.58	1.1344	49.3	48.973	50.108	-0.27977					64	29	4	0	0	0	0.43628	1	4972	4972		63.534	6.8128	1	4750300			90827	9337	63064	63167	101362	101362					0.05767224728754172
YLSEKVLAA	9	Unmodified	_YLSEKVLAA_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	497.2843017578125	2	497.2844	992.554247	-0.073915	-3.6757E-05	-0.8119	-0.00040374	-0.88581	-0.0004405	497.28383505483635	49.427	0.82966	49.245	48.921	49.751	-0.18206					65	21	5	0	0	0	0.17822	2	4961	4950;4961		93.195	21.9	1	4262700			90828	9337	63064	63167	101363;101364	101364					0.05767224728754172
YLSIPIIF	8	Unmodified	_YLSIPIIF_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.2535705566406	2	483.288954	964.563355	-0.042534	-2.0556E-05	3.5509	0.0017161	3.5083	0.0016955	483.292426506304	52.179	0.79179	52.179	51.803	52.595	0					52	20	4	0	0	0	0.027866	1	5590	5590		60.404	25.203	1	1036700	+		90829	20226	63065	63168	101365	101365					0.07965618085108872
YLSKIIPAL	9	Unmodified	_YLSKIIPAL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.3206481933594	2	509.320786	1016.62702	-0.40661	-0.00020709	-0.16732	-8.5219E-05	-0.57393	-0.00029231	509.3205924559689	69.163	1.354	69.163	68.6	69.954	0					92	34	4	0	0	0	0.067814	4	8311	8311;8323;8336;8348		122.18	57.969	1	5414400			90830	3116	63066	63169	101366;101367;101368;101369	101366					0.11936978522169284
YLSKIIPAL	9	Unmodified	_YLSKIIPAL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.3209533691406	2	509.320786	1016.62702	0.38701	0.00019711	-0.91731	-0.00046721	-0.5303	-0.00027009	509.32021864567577	69.478	1.4045	69.185	68.595	70	-0.29291					89	35	4	0	0	0	0.067814	3	8340	8323;8340;8361		122.18	51.89	1	5539700			90831	3116	63066	63169	101370;101371;101372	101371					0.11936978522169284
YLSKIIPAL	9	Unmodified	_YLSKIIPAL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.320068359375	2	509.320786	1016.62702	-0.51106	-0.00026029	-0.13049	-6.6464E-05	-0.64155	-0.00032676	509.320603278561	69.216	1.4656	69.232	68.569	70.034	0.015121					95	37	4	0	0	0	0.15366	3	8245	8245;8258;8270		98.629	39.781	1	5171500			90832	3116	63066	63169	101373;101374;101375	101373					0.11936978522169284
YLSKNLIEF	9	Unmodified	_YLSKNLIEF_					0	0	0			REV__TGM7|p.G244Afs*31|1|0.35|ENSG00000159495|chr15:43287414-43287414|C/-|frameshift_variant	REV__TGM7|p.G244Afs*31|1|0.35|ENSG00000159495|chr15:43287414-43287414|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.7642822265625	2	563.810782	1125.60701	-0.42099	-0.00023736	0.46525	0.00026231	0.044251	2.4949E-05	563.8111661133156	76.803	0.46061	76.635	76.439	76.899	-0.16853					22	10	3	0	0	0	0.024495	1	9111	9111		26.693	0	1	320480	+		90833	25261	63067	63170	101376	101376					0.049231827915718895
YLSKTANKLI	10	Unmodified	_YLSKTANKLI_					0	0	0		ENST00000508784.5_1_4:146681933-146682710:-|nuORF	ENST00000508784.5_1_4:146681933-146682710:-|nuORF	ENST00000508784.5_1_4:146681933-146682710:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.8428344726562	2	575.845156	1149.67576	-0.082095	-4.7274E-05	-3.6826	-0.0021206	-3.7647	-0.0021679	575.8428904177832	89.053	2.4888	89.069	87.596	90.084	0.015907					179	59	4	0	0	0	1.0992	1	11202	11202		32.812	2.3088	1	1475600			90834	15790	63068	63171	101377	101377					0.10690847091291289
YLSLAETLN	9	Unmodified	_YLSLAETLN_					0	0	0			REV__SMS|p.C318Y|1|0.33|ENSG00000102172|chrX:21992604-21992604|G/A|missense_variant	REV__SMS|p.C318Y|1|0.33|ENSG00000102172|chrX:21992604-21992604|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.2698364257812	2	512.27149	1022.52843	-0.70803	-0.0003627	0.58298	0.00029865	-0.12505	-6.4059E-05	512.2712607905927	104.7	1.035	104.57	104.16	105.19	-0.12927					66	32	3	0	0	0	0.83071	2	13064	13044;13064		37.159	8.0096	1	187370	+		90835	21293	63069	63172	101378;101379	101379					0.018063304864767815
YLSLDIDNV	9	Unmodified	_YLSLDIDNV_					0	0	0			REV__ENSG00000065548|ENST00000337859|ZC3H15	REV__ENSG00000065548|ENST00000337859|ZC3H15	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2682495117188	2	526.268947	1050.52334	-0.41537	-0.0002186	1.7375	0.00091438	1.3221	0.00069578	526.2697641131734	66.447	0.78979	66.198	65.741	66.531	-0.24839					35	21	2	0	0	0	0.83071	1	7619	7619		37.159	1.5408	1	1308600	+		90836	20314	63070	63173	101380	101380					0.00010026623863268469
YLSLLNQQL	9	Unmodified	_YLSLLNQQL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.3043823242188	2	546.308406	1090.60226	-1.0374	-0.00056674	0.60016	0.00032787	-0.43725	-0.00023887	546.3086635385422	80.742	1.4545	80.742	80.415	81.869	0					115	35	5	0	0	0	0.013094	2	10096	10084;10096		171.38	49.242	1	6295800			90837	5711	63071	63174	101381;101382	101382					0.06058298648804339
YLSLLNQQL	9	Unmodified	_YLSLLNQQL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	546.304931640625	2	546.308406	1090.60226	-1.4772	-0.00080701	0.99612	0.00054419	-0.48109	-0.00026282	546.3088718998797	80.889	1.6581	80.737	80.385	82.043	-0.15168					114	40	4	0	0	0	0.013333	2	10081	10068;10081		176.41	46.728	1	6510100			90838	5711	63071	63174	101383;101384	101384					0.06058298648804339
YLSLLNQQL	9	Unmodified	_YLSLLNQQL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.32470703125	2	546.308406	1090.60226	-0.44593	-0.00024361	-2.0659	-0.0011286	-2.5118	-0.0013722	546.306395521252	68.351	0.3536	68.059	67.857	68.211	-0.29267					9	8	2	0	0	0	0.024427	1	8171	8171		51.335	15.717	1	73545			90839	5711	63071	63174	101385	101385					0.06058298648804339
YLSLLNQQL	9	Unmodified	_YLSLLNQQL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	546.3056030273438	2	546.308406	1090.60226	-1.6444	-0.00089838	1.1247	0.00061443	-0.51976	-0.00028395	546.3089363167138	80.69	1.8733	80.714	80.148	82.022	0.023911					119	45	4	0	0	0	0.014013	2	10014	10003;10014		166.78	62.036	1	6800000			90840	5711	63071	63174	101386;101387	101387					0.06058298648804339
YLSLRFDL	8	Unmodified	_YLSLRFDL_					0	0	0		sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.78759765625	2	513.784567	1025.55458	0.1536	7.8916E-05	0.77362	0.00039747	0.92721	0.00047639	513.7844067445246	71.678	0.47968	71.416	71.241	71.72	-0.26199					18	11	2	0	0	0	0.027866	1	8366	8366		11.511	0	1	273710			90841	37937	63072	63175	101388	101388					0.04282644448608153
YLSLRFDL	8	Unmodified	_YLSLRFDL_					0	0	0		sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	sp|P03231|GH_EBVB9EnvelopeglycoproteinHOS=Epstein-Barrvirus(strainB95-8)OX=10377GN=gHPE=1SV=1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	513.784567	1025.55458	0.14343	7.3691E-05	0.79274	0.0004073	0.93617	0.00048099	513.7844163042188	71.763	0.47366	71.488	71.273	71.747	-0.2751	0.053024	0.00028353	NaN	29.15	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232090			90842	37937	63072	63175							0.04282644448608153
YLSNIILKM	9	Unmodified	_YLSNIILKM_					0	0	0			REV__ENST00000559111.1_1_15:99797871-99798159:+|nuORF	REV__ENST00000559111.1_1_15:99797871-99798159:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.29150390625	2	547.817553	1093.62055	0.043691	2.3934E-05	-3.7481	-0.0020533	-3.7044	-0.0020293	547.8155835894005	72.849	1.2344	72.568	72.139	73.374	-0.28124					65	30	4	0	0	0	0.024292	1	8821	8821		49.442	15.52	1	1417400	+		90843	35109	63073	63176	101389	101389					0.0774871729915958
YLSNMVFDM	9	2 Oxidation (M)	_YLSNM(Oxidation (M))VFDM(Oxidation (M))_		YLSNM(1)VFDM(1)		YLSNM(53)VFDM(53)	0	0	2			REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	576.2408447265625	2	576.241018	1150.46748	-0.12884	-7.4242E-05	-0.54721	-0.00031532	-0.67605	-0.00038957	576.2407423923137	68.81	1.9237	68.579	68.195	70.119	-0.23048					124	46	5	0	0	0	0.59099	1	7996	7996		53.351	10.955	1	21653000	+		90844	23350	63074	63177	101390	101390		694;695			-0.10173265879620885
YLSPDLSKV	9	Unmodified	_YLSPDLSKV_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF;ENST00000479537.5_1_7:140434399-140447180:-|nuORF;ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	511.28228759765625	2	511.281857	1020.54916	-0.05919	-3.0263E-05	-0.41029	-0.00020977	-0.46948	-0.00024003	511.281434963793	55.93	0.52963	55.93	55.61	56.139	0					41	14	4	0	0	0	0.26413	1	6214	6214		80.455	18.347	1	2789100			90845	6619	63075	63178	101391	101391					0.03970920866152028
YLSPDLSKV	9	Unmodified	_YLSPDLSKV_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF;ENST00000479537.5_1_7:140434399-140447180:-|nuORF;ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.281982421875	2	511.281857	1020.54916	-0.25663	-0.00013121	-0.32444	-0.00016588	-0.58107	-0.00029709	511.28157774139277	56.001	0.5124	55.845	55.554	56.067	-0.15601					41	13	4	0	0	0	0.16539	2	6197	6197;6209		96.034	10.616	1	2827900			90846	6619	63075	63178	101392;101393	101392					0.03970920866152028
YLSPDLSKV	9	Unmodified	_YLSPDLSKV_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF;ENST00000479537.5_1_7:140434399-140447180:-|nuORF;ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.28179931640625	2	511.281857	1020.54916	-1.0919	-0.00055829	0.4727	0.00024168	-0.61923	-0.0003166	511.28192316252824	55.695	0.69643	55.793	55.371	56.067	0.098011					50	18	4	0	0	0	0.094442	2	6092	6092;6103		112.41	16.158	1	2413800			90847	6619	63075	63178	101394;101395	101394					0.03970920866152028
YLSPDLSKV	9	Unmodified	_YLSPDLSKV_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF;ENST00000479537.5_1_7:140434399-140447180:-|nuORF;ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	511.2818298339844	2	511.281857	1020.54916	-1.0105	-0.00051666	0.63732	0.00032585	-0.3732	-0.00019081	511.2821364649977	56.153	0.55684	55.938	55.602	56.158	-0.21551					36	14	3	0	0	0	0.041068	2	6049	6049;6060		132.76	39.562	1	1593000			90848	6619	63075	63178	101396;101397	101396					0.03970920866152028
YLSPDLSKV	9	Unmodified	_YLSPDLSKV_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF;ENST00000479537.5_1_7:140434399-140447180:-|nuORF;ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.281857	1020.54916	-0.73679	-0.00037671	0.19783	0.00010114	-0.53896	-0.00027556	511.2818732353578	56.015	1.1924	55.858	54.901	56.093	-0.15656	-0.018861	0.00019466	NaN	132.76	57	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1501400			90849	6619	63075	63178							0.03970920866152028
YLSPDLSKV	9	Unmodified	_YLSPDLSKV_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF;ENST00000479537.5_1_7:140434399-140447180:-|nuORF;ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.281857	1020.54916	-0.052428	-2.6806E-05	-0.30864	-0.0001578	-0.36106	-0.00018461	511.28161046805184	56.113	0.51984	55.897	55.598	56.118	-0.21607	0.019808	-0.00032323	NaN	132.76	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1479400			90850	6619	63075	63178							0.03970920866152028
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2565612792969	2	506.253297	1010.49204	0.11815	5.9812E-05	-0.35521	-0.00017982	-0.23706	-0.00012001	506.25295641739086	56.485	0.7751	56.269	55.958	56.733	-0.21607					53	19	4	0	0	0	0.31037	1	6109	6109		74.255	12.148	1	2125100			90851	3666	63076	63179	101398	101398					-0.012785464102307742
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.25390625	2	506.253297	1010.49204	-0.23666	-0.00011981	0.076885	3.8923E-05	-0.15978	-8.0888E-05	506.2531924631687	56.491	1.1196	56.266	55.842	56.961	-0.22479					56	28	4	0	0	0	0.19099	1	6108	6108		90.37	8.1293	1	2231900			90852	3666	63076	63179	101399	101399					-0.012785464102307742
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	506.253297	1010.49204	-0.42737	-0.00021636	-0.26415	-0.00013373	-0.69153	-0.00035009	506.25296051252013	56.182	0.8153	56.182	55.645	56.46	0	-0.016326	-0.00012392	NaN	90.37	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1567200			90853	3666	63076	63179							-0.012785464102307742
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	506.253297	1010.49204	-0.55648	-0.00028172	-0.55338	-0.00028015	-1.1099	-0.00056187	506.2526039982304	56.328	0.80006	56.172	55.814	56.614	-0.15601	-0.026858	-0.00041676	NaN	90.37	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1496400			90854	3666	63076	63179							-0.012785464102307742
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	506.253297	1010.49204	-0.69208	-0.00035037	-0.5047	-0.00025551	-1.1968	-0.00060588	506.25261502595157	55.988	0.7655	56.086	55.744	56.51	0.097893	-0.11305	-0.00036748	NaN	90.37	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1879600			90855	3666	63076	63179							-0.012785464102307742
YLSRVQGF	8	Unmodified	_YLSRVQGF_					0	0	0		nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1	nc|ENSG00000124214|O95793-2|STAU1	nc|ENSG00000124214|O95793-2|STAU1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.26263427734375	2	485.261259	968.507966	0.60688	0.00029449	-0.67496	-0.00032753	-0.068083	-3.3038E-05	485.2608250425635	56.787	0.93991	56.562	56.269	57.209	-0.2248					53	24	3	0	0	0	0.81662	1	6141	6141		57.811	7.7867	1	4795700			90856	4026	63077	63180	101400	101400					0.022452046173384588
YLSVPLNFM	9	Oxidation (M)	_YLSVPLNFM(Oxidation (M))_		YLSVPLNFM(1)		YLSVPLNFM(100)	0	0	1			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	550.2461547851562	2	550.27826	1098.54197	-0.29617	-0.00016298	2.223	0.0012233	1.9269	0.0010603	550.2782618459769	78.385	0.94003	78.13	77.66	78.6	-0.25471					55	21	4	0	0	0	0.022756	1	9353	9353		102.77	56.821	1	679770	+		90857	22452	63078	63181	101401	101401		664			-0.003361350059549295
YLSVPLNFM	9	Oxidation (M)	_YLSVPLNFM(Oxidation (M))_		YLSVPLNFM(1)		YLSVPLNFM(91)	0	0	1			REV__ENSG00000119401|ENST00000450136|TRIM32	REV__ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	550.2454833984375	2	550.27826	1098.54197	0.34459	0.00018962	2.2582	0.0012427	2.6028	0.0014323	550.2781366773904	78.322	1.0644	78.091	77.586	78.65	-0.23141					62	24	4	0	0	0	0.023417	1	9360	9360		90.777	34.056	1	730150	+		90858	22452	63078	63181	101402	101402		664			-0.003361350059549295
YLSVVFDCL	9	Unmodified	_YLSVVFDCL_					0	0	0			REV__ENST00000229812.7_1_6:36461791-36461878:-|nuORF	REV__ENST00000229812.7_1_6:36461791-36461878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	528.8059692382812	2	529.764986	1057.51542	-0.26681	-0.00014135	-3.4624	-0.0018343	-3.7292	-0.0019756	530.2647051088545	49.914	0.18349	49.763	49.634	49.817	-0.1512					6	4	2	0	0	0	0.024325	1	5157	5157		60.294	14.342	1	57797	+		90859	29403	63079	63182	101403	101403					-0.011038238972560066
YLTAEILEL	9	Unmodified	_YLTAEILEL_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.797119140625	2	532.79734	1063.58013	-1.8553	-0.0009885	1.417	0.00075496	-0.43834	-0.00023355	532.7979875934084	90.783	1.5973	90.783	90.427	92.024	0					97	37	5	0	0	0	0.022311	4	11493	11471;11481;11493;11505		147.69	36.045	1	8900300			90860	9323;3315	63080	63183	101404;101405;101406;101407	101406					0.05088074180366675
YLTAEILEL	9	Unmodified	_YLTAEILEL_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	532.7972412109375	2	532.79734	1063.58013	-0.59321	-0.00031606	0.16913	9.0113E-05	-0.42407	-0.00022595	532.7973071652033	90.818	1.5548	90.801	90.402	91.957	-0.016716					97	36	5	0	0	0	0.016838	6	11457	11436;11446;11457;11469;11482;11495		152.63	23.772	1	8281500			90861	9323;3315	63080	63183	101408;101409;101410;101411;101412;101413	101410					0.05088074180366675
YLTAEILEL	9	Unmodified	_YLTAEILEL_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7973022460938	2	532.79734	1063.58013	-0.039993	-2.1308E-05	-0.30371	-0.00016182	-0.3437	-0.00018312	532.7970772121272	90.793	1.5466	90.805	90.492	92.039	0.011276					103	36	5	0	0	0	0.015925	4	11417	11395;11417;11429;11456		157.21	36.588	1	9257100			90862	9323;3315	63080	63183	101414;101415;101416;101417	101415					0.05088074180366675
YLTAEILEL	9	Unmodified	_YLTAEILEL_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	532.797119140625	2	532.79734	1063.58013	-1.3124	-0.00069924	1.0606	0.00056507	-0.25182	-0.00013417	532.7977112360818	90.736	0.9549	90.581	90.264	91.219	-0.1552					66	22	5	0	0	0	0.034181	3	11097	11097;11108;11120		138.24	26.594	1	3598100			90863	9323;3315	63080	63183	101418;101419;101420	101418					0.05088074180366675
YLTAEILEL	9	Unmodified	_YLTAEILEL_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	532.7972412109375	2	532.79734	1063.58013	-1.0695	-0.00056981	0.74039	0.00039448	-0.32908	-0.00017533	532.7976248853954	90.774	0.95075	90.649	90.249	91.199	-0.12512					71	22	5	0	0	0	0.08613	4	11118	11107;11118;11129;11142		115.46	29.343	1	4607100			90864	9323;3315	63080	63183	101421;101422;101423;101424	101422					0.05088074180366675
YLTAEILEL	9	Unmodified	_YLTAEILEL_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000276368|ENST00000333151|H2AC14	nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	532.797119140625	2	532.79734	1063.58013	0.037336	1.9893E-05	-0.43132	-0.00022981	-0.39399	-0.00020991	532.7969258996008	90.805	2.0146	90.666	90.278	92.293	-0.13893					103	47	5	0	0	0	0.039744	4	11107	11095;11107;11119;11145		133.81	36.34	1	4409700			90865	9323;3315	63080	63183	101425;101426;101427;101428	101426					0.05088074180366675
YLTCLLLW	8	Unmodified	_YLTCLLLW_					0	0	0		PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant;ENSG00000270601|ENST00000622421|PRAMEF5;ENSG00000232423|ENST00000376189|PRAMEF6;ENSG00000243073|ENST00000235349|PRAMEF4;ENSG00000239810|ENST00000619922|PRAMEF11	PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant	PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7693481445312	2	512.780439	1023.54633	-1.1812	-0.0006057	3.6173	0.0018549	2.4361	0.0012492	512.7825922496882	38.607	0.54313	38.428	38.17	38.713	-0.17929					33	14	4	0	0	0	0.027866	1	3229	3229		74.517	8.6191	1	397060			90866	10707	63081	63184	101429	101429					0.03549374207625533
YLTCLLLW	8	Unmodified	_YLTCLLLW_					0	0	0		PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant;ENSG00000270601|ENST00000622421|PRAMEF5;ENSG00000232423|ENST00000376189|PRAMEF6;ENSG00000243073|ENST00000235349|PRAMEF4;ENSG00000239810|ENST00000619922|PRAMEF11	PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant	PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	512.7693481445312	2	512.780439	1023.54633	-0.78592	-0.000403	3.7372	0.0019164	2.9513	0.0015134	512.7822133911299	38.591	0.49835	38.369	38.119	38.617	-0.22149					21	12	2	0	0	0	0.027866	1	3229	3229		49.211	10.189	1	348350			90867	10707	63081	63184	101430	101430					0.03549374207625533
YLTCLLLW	8	Unmodified	_YLTCLLLW_					0	0	0		PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant;ENSG00000270601|ENST00000622421|PRAMEF5;ENSG00000232423|ENST00000376189|PRAMEF6;ENSG00000243073|ENST00000235349|PRAMEF4;ENSG00000239810|ENST00000619922|PRAMEF11	PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant	PRAMEF11|p.R195Afs*7|1|0.3|ENSG00000239810|chr1:12827541-12827541|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	512.7693481445312	2	512.780439	1023.54633	-0.20854	-0.00010694	2.0014	0.0010263	1.7928	0.00091932	512.7817749384976	38.63	0.66257	38.407	38.18	38.842	-0.22248					31	17	3	0	0	0	0.027866	1	3221	3221		46.766	7.7449	1	371950			90868	10707	63081	63184	101431	101431					0.03549374207625533
YLTDEDIIL	9	Unmodified	_YLTDEDIIL_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	548.30029296875	2	547.78443	1093.55431	0.55694	0.00030508	1.3346	0.00073106	1.8915	0.0010361	547.7855685704419	59.91	0.88557	59.91	59.37	60.256	0					37	23	2	0	0	0	0.024354	1	6805	6805		47.916	7.343	1	506070	+		90869	22059	63082	63185	101432	101432					0.011271799381120218
YLTDEDIIL	9	Unmodified	_YLTDEDIIL_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	548.3015747070312	2	547.78443	1093.55431	-1.1085	-0.00060721	3.0544	0.0016731	1.9459	0.0010659	547.7863237523454	59.7	0.89814	59.786	59.389	60.287	0.085682					34	23	2	0	0	0	0.024294	1	6720	6720		55.504	9.5523	1	388620	+		90870	22059	63082	63185	101433	101433					0.011271799381120218
YLTDLQVSL	9	Unmodified	_YLTDLQVSL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	526.2870483398438	2	526.28714	1050.55973	-1.0054	-0.00052912	0.4938	0.00025988	-0.51159	-0.00026924	526.2873767369624	82.342	1.3142	82.342	81.909	83.223	0					75	30	4	0	0	0	0.015713	3	10280	10269;10280;10292		195.06	61.251	1	7235600			90871	17284	63083	63186	101434;101435;101436	101435					0.03646903520575506
YLTDLQVSL	9	Unmodified	_YLTDLQVSL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	526.2872314453125	2	526.28714	1050.55973	1.1225	0.00059074	-1.6751	-0.00088159	-0.55264	-0.00029085	526.2862349548825	82.426	1.8547	82.316	81.765	83.619	-0.11006					90	41	4	0	0	0	0.013293	3	10252	10252;10263;10275		180.87	55.466	1	6377800			90872	17284	63083	63186	101437;101438;101439	101437					0.03646903520575506
YLTDLQVSL	9	Unmodified	_YLTDLQVSL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	526.2872924804688	2	526.28714	1050.55973	-0.15426	-8.1187E-05	-0.44472	-0.00023405	-0.59898	-0.00031524	526.2868555242968	82.311	2.3512	82.337	81.982	84.333	0.025711					111	54	4	0	0	0	0.01388	4	10205	10182;10193;10205;10216		180.87	60.248	1	6861700			90873	17284	63083	63186	101440;101441;101442;101443	101442					0.03646903520575506
YLTDLQVSL	9	Unmodified	_YLTDLQVSL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2872314453125	2	526.28714	1050.55973	0.31093	0.00016364	-0.7293	-0.00038382	-0.41838	-0.00022019	526.286742946889	82.458	1.2983	82.238	81.828	83.126	-0.22016					80	29	5	0	0	0	0.013924	5	9902	9902;9913;9925;9937;9951		209.84	76.027	1	8189400			90874	17284	63083	63186	101444;101445;101446;101447;101448	101444					0.03646903520575506
YLTDLQVSL	9	Unmodified	_YLTDLQVSL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	526.287353515625	2	526.28714	1050.55973	0.021278	1.1198E-05	-0.60811	-0.00032004	-0.58683	-0.00030884	526.2867567685372	82.446	1.5406	82.266	81.898	83.439	-0.18079					100	35	5	0	0	0	0.015713	6	9951	9918;9927;9939;9951;9965;9973		209.84	76.027	1	9080600			90875	17284	63083	63186	101449;101450;101451;101452;101453;101454	101452					0.03646903520575506
YLTDLQVSL	9	Unmodified	_YLTDLQVSL_					0	0	0		ENST00000588207.1_1_18:57637691-57638603:+|nuORF;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	ENST00000588207.1_1_18:57637691-57638603:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	526.2871704101562	2	526.28714	1050.55973	-0.65152	-0.00034289	0.14629	7.6989E-05	-0.50524	-0.0002659	526.2871737097381	82.382	1.5542	82.242	81.827	83.381	-0.14014					84	35	4	0	0	0	0.013468	5	9906	9895;9906;9918;9930;9950		225.24	91.424	1	7768300			90876	17284	63083	63186	101455;101456;101457;101458;101459	101456					0.03646903520575506
YLTGPETKID	10	Unmodified	_YLTGPETKID_					0	0	0			REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	REV__nc|ENSG00000055609|Q8NEZ4-2|KMT2C	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	567.810546875	2	568.795329	1135.5761	-0.91761	-0.00052193	-0.29495	-0.00016777	-1.2126	-0.0006897	568.794464597644	68.748	0.61241	68.748	68.482	69.094	0					33	15	3	0	0	0	0.03519	1	8308	8308		51.335	7.2187	1	314250	+		90877	36458	63084	63187	101460	101460					0.013739846866428707
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.744873046875	2	509.745639	1017.47673	-0.68683	-0.00035011	-0.17963	-9.1563E-05	-0.86645	-0.00044167	509.74524148015485	38.847	1.914	38.847	38.433	40.347	0					122	52	3	0	0	0	0.015769	4	3309	3273;3285;3296;3309		157.99	63.307	1	9556600			90878	4058	63085	63188	101461;101462;101463;101464	101464					-0.03131413207427158
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.7455139160156	2	509.745639	1017.47673	-0.57034	-0.00029073	-0.76937	-0.00039218	-1.3397	-0.00068291	509.74515878558134	38.839	1.7104	38.74	38.398	40.108	-0.098755					94	46	4	0	0	0	0.028181	4	3254	3254;3266;3278;3290		143.02	65.702	1	8893800			90879	4058	63085	63188	101465;101466;101467;101468	101465					-0.03131413207427158
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.7447509765625	2	509.745639	1017.47673	-1.1737	-0.00059828	-0.22825	-0.00011635	-1.4019	-0.00071463	509.7454452843057	39.021	1.33	39.045	38.648	39.978	0.023727					87	36	6	0	0	0	0.022311	4	3269	3244;3257;3269;3282		147.69	51.503	1	10106000			90880	4058	63085	63188	101469;101470;101471;101472	101471					-0.03131413207427158
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.745639	1017.47673	-1.1117	-0.00056671	-0.27565	-0.00014051	-1.3874	-0.00070722	509.745315099264	38.963	1.0595	38.799	38.32	39.379	-0.16458	-0.05603	0.00024702	NaN	157.99	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1367000			90881	4058	63085	63188							-0.03131413207427158
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.745639	1017.47673	-0.76232	-0.00038859	-0.38241	-0.00019493	-1.1447	-0.00058352	509.7452480238964	39.095	0.88589	38.872	38.457	39.343	-0.22311	0.017185	0.00013817	NaN	157.99	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1340800			90882	4058	63085	63188							-0.03131413207427158
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.745639	1017.47673	-0.17026	-8.6791E-05	-1.1014	-0.00056144	-1.2717	-0.00064823	509.7448473494404	39.052	0.91205	38.826	38.483	39.395	-0.2257	-0.028896	-0.00059484	NaN	157.99	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1458500			90883	4058	63085	63188							-0.03131413207427158
YLTIKKPM	8	Unmodified	_YLTIKKPM_					0	0	0		nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.I914Rfs*6|1|0.13|ENSG00000163939|chr3:52603559-52603560|-/TTTC|frameshift_variant;nc|ENSG00000163939|Q86U86-4|PBRM1;ENST00000480064.1_1_3:52643285-52649409:-|nuORF	nc|ENSG00000163939|Q86U86-5|PBRM1	nc|ENSG00000163939|Q86U86-5|PBRM1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2957458496094	2	497.293714	992.572874	-0.1863	-9.2648E-05	3.8255	0.0019024	3.6392	0.0018098	497.29536945073573	34.758	1.1281	34.758	34.479	35.608	0					56	29	5	0	0	0	0.97924	1	2613	2613		40.573	0	1	1595200			90884	7175	63086	63189	101473	101473					0.07629063098966071
YLTIQQLLE	9	Unmodified	_YLTIQQLLE_					0	0	0		CON__Q3T052;ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	CON__Q3T052;nc|ENSG00000055955|Q14624-4|ITIH4	CON__Q3T052	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	560.829345703125	2	560.816064	1119.61758	0.046942	2.6326E-05	-0.34135	-0.00019143	-0.29441	-0.00016511	560.8153382336855	72.141	0.44511	71.866	71.626	72.071	-0.27509					14	10	2	0	0	0	0.024181	1	8459	8459		54.722	0	1	121090		+	90885	555;1192	63087	63190	101474	101474					0.06255165446009414
YLTIVFLLTK	10	Unmodified	_YLTIVFLLTK_					0	0	0			REV__ENSG00000188800|ENST00000372766|TMCO2	REV__ENSG00000188800|ENST00000372766|TMCO2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	404.9229431152344	3	404.253042	1209.7373	-1.0512	-0.00042494	-2.3394	-0.00094572	-3.3906	-0.0013707	404.58711953974944	26.435	0.47849	26.272	26.101	26.579	-0.16331					20	12	2	0	0	0	0.03519	1	1389	1389		23.378	2.3457	1	86368	+		90886	28066	63088	63191	101475	101475					0.14081778790568933
YLTKLLDKAF	10	Unmodified	_YLTKLLDKAF_					0	0	0			REV__ENSG00000146005|ENST00000274710|PSD2	REV__ENSG00000146005|ENST00000274710|PSD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.5719909667969	3	404.572663	1210.69616	1.2795	0.00051765	-3.3639	-0.0013609	-2.0844	-0.00084327	404.5712987755108	20.95	0.97989	20.754	20.435	21.415	-0.19577					35	19	2	0	0	0	1.1314	1	598	598		27.047	2.5281	1	802240	+		90887	24450	63089	63192	101476	101476					0.0992401775106373
YLTLKIEQ	8	Unmodified	_YLTLKIEQ_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.7668762207031	2	504.292225	1006.5699	-0.73876	-0.00037255	-0.52154	-0.00026301	-1.2603	-0.00063556	504.7931217564196	66.107	0.36362	65.894	65.753	66.117	-0.21328					13	8	2	0	0	0	0.027866	1	7570	7570		44.117	9.9443	1	57342			90888	9860	63090	63193	101477	101477					0.0668751124579785
YLTNVNTTV	9	Unmodified	_YLTNVNTTV_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	512.7688598632812	2	512.769114	1023.52368	-1.0997	-0.00056388	0.307	0.00015742	-0.79267	-0.00040645	512.7691014557322	55.717	1.7354	55.815	55.083	56.818	0.098015					90	46	3	0	0	0	0.34489	1	6084	6084		69.628	8.6557	1	1789500			90889	2366	63091	63194	101478	101478					0.012854463437065533
YLTRFRKRT	9	Unmodified	_YLTRFRKRT_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-8|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-8|TRPM3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	414.2144775390625	3	414.247285	1239.72002	0.32741	0.00013563	-3.3341	-0.0013811	-3.0067	-0.0012455	414.24601095651536	24.078	0.98842	24.078	23.441	24.429	0					30	19	3	0	0	0	0.024541	1	1049	1049		37.812	17.497	1	128610	+		90890	20706	63092	63195	101479	101479					0.10975296028118464
YLTWANETK	9	Unmodified	_YLTWANETK_					0	0	0		SLC32A1|p.D364N|1|0.08|ENSG00000101438|chr20:38728151-38728151|G/A|missense_variant	SLC32A1|p.D364N|1|0.08|ENSG00000101438|chr20:38728151-38728151|G/A|missense_variant	SLC32A1|p.D364N|1|0.08|ENSG00000101438|chr20:38728151-38728151|G/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	564.26806640625	2	563.282389	1124.55022	-0.31673	-0.00017841	2.8513	0.0016061	2.5346	0.0014277	563.2834301155887	60.065	1.1281	59.817	59.13	60.258	-0.24842					48	28	3	0	0	0	0.024405	1	6626	6626		27.882	1.0861	1	262100			90891	37885	63093	63196	101480	101480					-0.007068647649703053
YLTWANETK	9	Unmodified	_YLTWANETK_					0	0	0		SLC32A1|p.D364N|1|0.08|ENSG00000101438|chr20:38728151-38728151|G/A|missense_variant	SLC32A1|p.D364N|1|0.08|ENSG00000101438|chr20:38728151-38728151|G/A|missense_variant	SLC32A1|p.D364N|1|0.08|ENSG00000101438|chr20:38728151-38728151|G/A|missense_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	563.282389	1124.55022	0.68127	0.00038375	1.7872	0.0010067	2.4685	0.0013905	563.2831150031749	60.11	1.0093	59.912	59.42	60.429	-0.19742	0.08936	-0.00033089	NaN	27.882	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307460			90892	37885	63093	63196							-0.007068647649703053
YLVILAISR	9	Unmodified	_YLVILAISR_					0	0	0			REV__ENST00000425964.1_1_X:73393805-73393898:+|nuORF	REV__ENST00000425964.1_1_X:73393805-73393898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	524.2413940429688	2	524.331685	1046.64882	-0.62883	-0.00032972	-0.28163	-0.00014767	-0.91046	-0.00047738	524.3313424789834	30.492	0.37136	30.247	30.079	30.45	-0.24415					17	8	3	0	0	0	0.024436	1	1939	1939		30.504	18.993	1	75459	+		90893	32263	63094	63197	101481	101481					0.12735783270727552
YLVKRFEL	8	Unmodified	_YLVKRFEL_					0	0	0		ENST00000367549.3_1_1:182852486-182852688:+|nuORF	ENST00000367549.3_1_1:182852486-182852688:+|nuORF	ENST00000367549.3_1_1:182852486-182852688:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.2969360351562	2	534.316035	1066.61752	-0.27534	-0.00014712	0.66347	0.0003545	0.38813	0.00020738	534.3165723973063	79.809	0.25154	79.658	79.529	79.78	-0.15051					7	5	2	0	0	0	0.027866	1	9534	9534		50.025	23.332	1	31527			90894	12863	63095	63198	101482	101482					0.08687210236666942
YLVLQVLQP	9	Unmodified	_YLVLQVLQP_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8|HECTD4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.7496337890625	2	536.823692	1071.63283	-0.52695	-0.00028288	2.8265	0.0015173	2.2996	0.0012345	536.8233729541821	76.274	0.51657	76.006	75.779	76.296	-0.26806					27	12	3	0	0	0	0.024487	1	9045	9045		31.955	1.4512	1	171410	+		90895	36945	63096	63199	101483	101483					0.09988077033835907
YLVLTLLL	8	Unmodified	_YLVLTLLL_					0	0	0			REV__ENST00000491863.1_1_22:46725205-46725322:+|nuORF	REV__ENST00000491863.1_1_22:46725205-46725322:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	474.79754638671875	2	474.312429	946.610306	-0.66613	-0.00031595	-2.7099	-0.0012853	-3.376	-0.0016013	474.31098553202577	33.023	0.39845	32.857	32.679	33.077	-0.16565					14	9	2	0	0	0	0.027866	1	2329	2329		26.796	6.3143	1	114420	+		90896	33733	63097	63200	101484	101484					0.1348647763622921
YLVLTLLL	8	Unmodified	_YLVLTLLL_					0	0	0			REV__ENST00000491863.1_1_22:46725205-46725322:+|nuORF	REV__ENST00000491863.1_1_22:46725205-46725322:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	474.312429	946.610306	0.076232	3.6158E-05	-3.2127	-0.0015238	-3.1365	-0.0014877	474.31089680676297	33.062	0.3266	32.862	32.69	33.016	-0.20019	0.027007	-0.0002608	NaN	26.796	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69788	+		90897	33733	63097	63200							0.1348647763622921
YLVNLSEKD	9	Unmodified	_YLVNLSEKD_					0	0	0		ENSG00000138430|ENST00000284719|OLA1;nc|ENSG00000138430|Q9NTK5-2|OLA1;nc|ENSG00000138430|Q9NTK5-3|OLA1;TMEM131-OLA1|1|fusion;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENSG00000138430|ENST00000284719|OLA1;ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENSG00000138430|ENST00000284719|OLA1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	540.2610473632812	2	540.782222	1079.54989	-1.1509	-0.00062238	-4.1295	-0.0022332	-5.2804	-0.0028555	540.7795310050869	61.34	1.1709	61.164	60.635	61.806	-0.1761					61	28	3	0	0	0	0.024323	1	6956	6956		63.306	8.53	1	1149900			90898	5242;13553	63098	63201	101485	101485					0.013297155152031337
YLVPLHEHS	9	Unmodified	_YLVPLHEHS_					0	0	0		RP1|p.C1024S|1|0.11|ENSG00000104237|chr8:54626952-54626952|T/A|missense_variant	RP1|p.C1024S|1|0.11|ENSG00000104237|chr8:54626952-54626952|T/A|missense_variant	RP1|p.C1024S|1|0.11|ENSG00000104237|chr8:54626952-54626952|T/A|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.30029296875	2	547.785099	1093.55564	-0.7679	-0.00042065	1.5546	0.00085158	0.78669	0.00043094	547.7861339981021	60.037	0.85546	59.837	59.393	60.248	-0.20016					34	22	2	0	0	0	0.024412	1	6790	6790		40.573	8.6178	1	376400			90899	37843	63099	63202	101486	101486					0.012608588174998658
YLVQGPLLLG	10	Unmodified	_YLVQGPLLLG_					0	0	0			REV__ENST00000568600.1_1_16:33780405-33781388:+|nuORF	REV__ENST00000568600.1_1_16:33780405-33781388:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	537.7494506835938	2	536.823692	1071.63283	-0.39107	-0.00020994	-0.46525	-0.00024976	-0.85632	-0.00045969	536.8232878512985	76.307	0.60755	76.056	75.792	76.399	-0.25162					18	14	2	0	0	0	0.03519	1	9054	9054		30.504	0.6621	1	162440	+		90900	35347	63100	63203	101487	101487					0.09988077033858644
YLVSNGDYYL	10	Unmodified	_YLVSNGDYYL_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF;nc|ENSG00000132554|Q8NE09-2|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.8107299804688	2	603.787504	1205.56045	-0.11948	-7.214E-05	0.6274	0.00037882	0.50792	0.00030668	604.2888512959729	63.198	0.21	62.94	62.75	62.96	-0.25824					6	4	2	0	0	0	0.03519	1	7119	7119		87.696	36.361	1	53028			90901	4620	63101	63204	101488	101488					-0.03410301830354001
YLVSNVIEL	9	Unmodified	_YLVSNVIEL_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000531653.5_1_11:47445967-47447800:-|nuORF;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.2979125976562	2	525.297507	1048.58046	-0.3386	-0.00017787	0.024919	1.309E-05	-0.31368	-0.00016478	525.2973112917875	84.676	1.0326	84.676	84.215	85.247	0					71	24	5	0	0	0	0.12602	1	10612	10612		104.75	10.74	1	1400200			90902	7485;16179	63102	63205	101489	101489					0.05811493900228015
YLVSTKGV	8	Unmodified	_YLVSTKGV_					0	0	0			REV__nc|ENSG00000069974|P51159-2|RAB27A	REV__nc|ENSG00000069974|P51159-2|RAB27A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.7515869140625	2	433.752736	865.490919	0.50306	0.0002182	-3.3096	-0.0014355	-2.8065	-0.0012173	433.7512119293158	19.727	1.5901	19.727	18.972	20.562	0					82	32	4	0	0	0	1.0472	1	405	405		29.842	3.0454	1	1278400	+		90903	20410	63103	63206	101490	101490					0.05279284011544405
YLVTILNDL	9	Unmodified	_YLVTILNDL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	531.3067016601562	2	532.305332	1062.59611	-0.16224	-8.6361E-05	-0.45543	-0.00024243	-0.61767	-0.00032879	532.3049243971903	58.298	0.48298	58.389	58.152	58.635	0.091217					38	12	4	0	0	0	0.024495	1	6555	6555		34.173	8.5985	1	1743800	+		90904	21027	63104	63207	101491	101491					0.06731780417271693
YLVVWVFLI	9	Unmodified	_YLVVWVFLI_					0	0	0		ENST00000547933.1_1_17:3593719-3599299:-|nuORF;nc|ENSG00000083454|Q93086-2|P2RX5;nc|ENSG00000083454|Q93086-5|P2RX5;nc|ENSG00000083454|Q93086-1|P2RX5;ENSG00000083454|ENST00000225328|P2RX5;nc|ENSG00000083454|Q93086-4|P2RX5;nc|ENSG00000083454|Q93086|P2RX5	ENST00000547933.1_1_17:3593719-3599299:-|nuORF	ENST00000547933.1_1_17:3593719-3599299:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2982788085938	2	576.346803	1150.67905	-0.25484	-0.00014688	-3.0143	-0.0017373	-3.2691	-0.0018841	576.3450155900125	93.344	0.52512	93.2	92.958	93.483	-0.1441					23	11	3	0	0	0	0.024541	1	11439	11439		21.702	0	1	135880			90905	1751	63105	63208	101492	101492					0.1097414193595796
YLVWIRSM	8	Unmodified	_YLVWIRSM_					0	0	0			REV__ENST00000303407.11_3_9:136898254-136898470:-|nuORF	REV__ENST00000303407.11_3_9:136898254-136898470:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.8131713867188	2	534.288963	1066.56337	0.048934	2.6145E-05	3.5134	0.0018772	3.5623	0.0019033	534.2905165581768	103.63	0.4165	103.5	103.28	103.69	-0.12724					17	9	2	0	0	0	0.027866	1	12908	12908		20.482	0	1	159050	+		90906	30095	63106	63209	101493	101493					0.03275294813442997
YLWYDTGIA	9	Unmodified	_YLWYDTGIA_					0	0	0			REV__ENSG00000075461|ENST00000262138|CACNG4	REV__ENSG00000075461|ENST00000262138|CACNG4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	551.7821655273438	2	551.266207	1100.51786	-0.10632	-5.8611E-05	-3.7787	-0.0020831	-3.885	-0.0021417	551.263836562036	45.422	0.73301	45.169	44.905	45.638	-0.25252					56	20	4	0	0	0	0.024386	1	4296	4296		52.299	21.796	1	3129300	+		90907	20550	63107	63210	101494	101494					-0.028376521679547295
YLYAEHLSL	9	Unmodified	_YLYAEHLSL_					0	0	0		TMPRSS7|p.F251L|1|0.16|ENSG00000176040|chr3:112047761-112047761|C/G|missense_variant	TMPRSS7|p.F251L|1|0.16|ENSG00000176040|chr3:112047761-112047761|C/G|missense_variant	TMPRSS7|p.F251L|1|0.16|ENSG00000176040|chr3:112047761-112047761|C/G|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	555.3151245117188	2	554.787307	1107.56006	-0.061088	-3.3891E-05	-1.3171	-0.00073069	-1.3781	-0.00076458	554.7863151253605	67.605	0.45877	67.371	67.217	67.676	-0.23376					16	10	2	0	0	0	0.022924	1	7811	7811		73.975	31.579	1	135260			90908	38094	63108	63211	101495	101495					0.010583232404314913
YLYAEHLSL	9	Unmodified	_YLYAEHLSL_					0	0	0		TMPRSS7|p.F251L|1|0.16|ENSG00000176040|chr3:112047761-112047761|C/G|missense_variant	TMPRSS7|p.F251L|1|0.16|ENSG00000176040|chr3:112047761-112047761|C/G|missense_variant	TMPRSS7|p.F251L|1|0.16|ENSG00000176040|chr3:112047761-112047761|C/G|missense_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	554.787307	1107.56006	-0.30019	-0.00016654	0.21742	0.00012062	-0.082764	-4.5917E-05	554.7874963351636	67.707	0.20538	67.418	67.347	67.552	-0.28834	0.041845	0.001036	NaN	63.306	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355900			90909	38094	63108	63211							0.010583232404314913
YLYEIRLV	8	Unmodified	_YLYEIRLV_					0	0	0			REV__ENSG00000205138|ENST00000378887|SDHAF1	REV__ENSG00000205138|ENST00000378887|SDHAF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.8057861328125	2	534.808042	1067.60153	-1.385	-0.00074073	-2.5714	-0.0013752	-3.9565	-0.002116	534.8066463394102	80.531	0.90666	80.379	80.008	80.915	-0.15169					39	21	2	0	0	0	0.94517	1	9972	9972		45.952	1.8352	1	1834600	+		90910	28662	63109	63212	101496	101496					0.07043503999739187
YLYEKRTV	8	Unmodified	_YLYEKRTV_					0	0	0		nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	536.7817993164062	2	536.295299	1070.57605	-0.41957	-0.00022501	1.4125	0.00075752	0.99294	0.00053251	536.2954127417672	61.148	0.31899	60.942	60.772	61.091	-0.20599					16	7	3	0	0	0	0.027866	1	6830	6830		57.811	11.859	1	117060			90911	2491	63110	63213	101497	101497					0.043580294773164496
YLYEKRTV	8	Unmodified	_YLYEKRTV_					0	0	0		nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	536.7821655273438	2	536.295299	1070.57605	-1.2851	-0.0006892	0.95034	0.00050966	-0.33477	-0.00017954	536.2958373241369	61.037	0.44443	60.861	60.635	61.08	-0.1761					15	10	2	0	0	0	0.027866	1	6804	6804		63.306	11.971	1	124910			90912	2491	63110	63213	101498	101498					0.043580294773164496
YLYEKRTV	8	Unmodified	_YLYEKRTV_					0	0	0		nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	536.295299	1070.57605	-0.85026	-0.00045599	-0.45819	-0.00024573	-1.3085	-0.00070172	536.7962907267995	60.9	0.60235	60.9	60.692	61.295	0	-0.0061987	-0.0011861	NaN	57.811	16	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75690			90913	2491	63110	63213							0.043580294773164496
YLYEKRTV	8	Unmodified	_YLYEKRTV_					0	0	0		nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	nc|ENSG00000103310|Q05996-2|ZP2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	536.295299	1070.57605	-0.75818	-0.00040661	0.78544	0.00042123	0.027262	1.4621E-05	536.2956026722243	61.135	0.33984	60.921	60.756	61.096	-0.21339	0.015295	0.00014784	NaN	57.811	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72398			90914	2491	63110	63213							0.043580294773164496
YLYFSFRWMSE	11	Unmodified	_YLYFSFRWMSE_					0	0	0			REV__ENSG00000172292|ENST00000305747|CERS6	REV__ENSG00000172292|ENST00000305747|CERS6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	510.303466796875	3	510.235834	1527.68567	-0.34137	-0.00017418	-2.8953	-0.0014773	-3.2366	-0.0016515	510.2346717776881	26.61	0.25153	26.61	26.531	26.783	0					9	5	2	0	0	0	0.024886	1	1389	1389		6.3209	0	1	25205	+		90915	26657	63111	63214	101499	101499					-0.05706332965655747
YLYFVGTIV	9	Unmodified	_YLYFVGTIV_					0	0	0		nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	537.8074951171875	2	537.797143	1073.57973	-0.41001	-0.0002205	-0.60157	-0.00032352	-1.0116	-0.00054402	537.7965912801078	77.912	1.4088	77.65	77.356	78.764	-0.26202					74	32	3	0	0	0	0.024412	1	9235	9235		40.573	0	1	403600			90916	2399	63112	63215	101500	101500					0.045886992511896096
YLYFVGTIV	9	Unmodified	_YLYFVGTIV_					0	0	0		nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	537.797143	1073.57973	0.28301	0.0001522	-1.0647	-0.00057261	-0.78172	-0.00042041	537.79634339305	77.882	1.277	77.64	77.362	78.639	-0.24232	0.0003871	-0.0011171	NaN	50.025	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501670			90917	2399	63112	63215							0.045886992511896096
YLYFVGTIV	9	Unmodified	_YLYFVGTIV_					0	0	0		nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	537.797143	1073.57973	-0.82325	-0.00044274	-0.07144	-3.842E-05	-0.89469	-0.00048116	537.7967973833183	77.79	1.539	77.628	77.311	78.85	-0.16196	-0.011668	-4.874E-05	NaN	50.025	81	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543750			90918	2399	63112	63215							0.045886992511896096
YLYFVLLL	8	Unmodified	_YLYFVLLL_					0	0	0		ENST00000340857.3_1_22:38202341-38202392:+|nuORF	ENST00000340857.3_1_22:38202341-38202392:+|nuORF	ENST00000340857.3_1_22:38202341-38202392:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7647094726562	2	522.312429	1042.61031	-1.7688	-0.00092386	3.964	0.0020704	2.1952	0.0011466	522.3143482830144	30.182	0.48994	30.182	29.936	30.426	0					21	11	2	0	0	0	0.027866	1	1947	1947		24.504	0	1	234970			90919	12478	63113	63216	101501	101501					0.09070477636237229
YLYGQTTTYL	10	Unmodified	_YLYGQTTTYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.8046264648438	2	611.803154	1221.59175	-0.0094675	-5.7922E-06	-0.20376	-0.00012466	-0.21323	-0.00013045	611.8028468083446	70.635	0.62865	70.635	70.397	71.026	0					32	14	4	0	0	0	0.1333	1	8538	8538		129.42	60.634	1	1062400			90920	18271	63114	63217	101502	101502					-0.01017728796296069
YLYGQTTTYL	10	Unmodified	_YLYGQTTTYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.8045043945312	2	611.803154	1221.59175	0.81484	0.00049852	-0.85531	-0.00052328	-0.040472	-2.4761E-05	611.8025053574536	70.989	0.62041	70.696	70.411	71.031	-0.29292					39	14	4	0	0	0	0.1333	1	8549	8549		129.42	44.506	1	965530			90921	18271	63114	63217	101503	101503					-0.01017728796296069
YLYGQTTTYL	10	Unmodified	_YLYGQTTTYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.8050537109375	2	611.803154	1221.59175	-0.99824	-0.00061072	0.75989	0.0004649	-0.23835	-0.00014582	611.8036257083555	70.709	0.77825	70.721	70.385	71.163	0.011772					43	18	4	0	0	0	0.014535	1	8471	8471		167.23	68.599	1	977810			90922	18271	63114	63217	101504	101504					-0.01017728796296069
YLYGQTTTYL	10	Unmodified	_YLYGQTTTYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	611.803154	1221.59175	-1.1105	-0.00067941	1.3247	0.00081044	0.21415	0.00013102	611.8036555853425	70.996	0.60995	70.724	70.493	71.103	-0.27185	0.031058	0.0013874	NaN	167.23	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355060			90923	18271	63114	63217							-0.01017728796296069
YLYGQTTTYL	10	Unmodified	_YLYGQTTTYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	611.803154	1221.59175	-0.2809	-0.00017185	0.47025	0.0002877	0.18935	0.00011584	611.8032327740854	70.949	0.55202	70.692	70.528	71.08	-0.25713	-0.0009849	0.00034192	NaN	167.23	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345260			90924	18271	63114	63217							-0.01017728796296069
YLYGQTTTYL	10	Unmodified	_YLYGQTTTYL_					0	0	0		nc|ENSG00000131747|P11388-3|TOP2A;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	nc|ENSG00000131747|P11388-3|TOP2A	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	611.803154	1221.59175	0.27489	0.00016818	-0.14305	-8.7516E-05	0.13185	8.0665E-05	611.8026985174253	70.905	0.40828	70.69	70.461	70.869	-0.21425	-0.0025043	-0.00040851	NaN	167.23	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420120			90925	18271	63114	63217							-0.01017728796296069
YLYNEGLSV	9	Unmodified	_YLYNEGLSV_					0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	529.2640991210938	2	529.263665	1056.51278	-0.5495	-0.00029083	0.49335	0.00026111	-0.056147	-2.9717E-05	529.2637878224313	69.715	0.68494	69.715	69.308	69.993	0					44	16	4	0	0	0	0.067814	1	8414	8414		122.18	49.556	1	1840500			90926	6914	63115	63218	101505	101505					-0.013219560305742561
YLYNEGLSV	9	Unmodified	_YLYNEGLSV_					0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.2642822265625	2	529.263665	1056.51278	0.37093	0.00019632	-0.40039	-0.00021191	-0.02946	-1.5592E-05	529.2632878376739	70.042	0.61353	69.749	69.386	70	-0.29291					43	14	4	0	0	0	0.057894	1	8415	8415		125.81	51.559	1	1822600			90927	6914	63115	63218	101506	101506					-0.013219560305742561
YLYNEGLSV	9	Unmodified	_YLYNEGLSV_					0	0	0		ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	ENSG00000162063|ENST00000397066|CCNF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.264404296875	2	529.263665	1056.51278	-0.36368	-0.00019248	0.33868	0.00017925	-0.024999	-1.3231E-05	529.263664932975	69.794	0.60808	69.806	69.463	70.071	0.012413					43	14	4	0	0	0	0.057894	2	8343	8331;8343		125.81	40.898	1	2216300			90928	6914	63115	63218	101507;101508	101508					-0.013219560305742561
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	577.3172607421875	2	577.316232	1152.61791	0.15861	9.1567E-05	-0.62562	-0.00036118	-0.46701	-0.00026961	577.3157541019424	71.979	0.59844	71.703	71.473	72.071	-0.2751					41	14	4	0	0	0	0.32064	2	8411	8411;8429		72.879	19.528	1	1751600			90929	4519	63116	63219	101509;101510	101509					0.047705851658292886
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	577.3169555664062	2	577.316232	1152.61791	-0.14198	-8.1966E-05	-0.41646	-0.00024043	-0.55843	-0.00032239	577.3158839110466	71.929	0.68369	71.667	71.403	72.087	-0.26199					35	16	3	0	0	0	0.43628	3	8419	8419;8431;8445		63.534	16.911	1	1614600			90930	4519	63116	63219	101511;101512;101513	101511					0.047705851658292886
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	577.3171997070312	2	577.316232	1152.61791	-0.14565	-8.4087E-05	-0.3661	-0.00021136	-0.51175	-0.00029544	577.3159251945597	71.804	0.8533	71.597	71.344	72.198	-0.20613					43	20	4	0	0	0	0.45795	3	8387	8377;8387;8401		62.107	19.711	1	1994500			90931	4519	63116	63219	101514;101515;101516	101515					0.047705851658292886
YLYSLEVQL	9	Unmodified	_YLYSLEVQL_					0	0	0		ENSG00000169919|ENST00000304895|GUSB	ENSG00000169919|ENST00000304895|GUSB	ENSG00000169919|ENST00000304895|GUSB	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.302734375	2	564.30279	1126.59103	0.64886	0.00036615	-0.96752	-0.00054598	-0.31866	-0.00017982	564.3021175084845	86.567	1.1928	86.425	86.147	87.34	-0.14217					62	27	3	0	0	0	0.53979	1	10555	10555		56.721	0.28726	1	2325000			90932	7990	63117	63220	101517	101517					0.032794765546668714
YLYSLEVQL	9	Unmodified	_YLYSLEVQL_					0	0	0		ENSG00000169919|ENST00000304895|GUSB	ENSG00000169919|ENST00000304895|GUSB	ENSG00000169919|ENST00000304895|GUSB	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.3027954101562	2	564.30279	1126.59103	0.021702	1.2247E-05	-0.2389	-0.00013481	-0.2172	-0.00012256	564.3024449610682	86.627	1.3657	86.49	86.136	87.502	-0.13734					77	31	4	0	0	0	0.30449	1	10533	10533		75.043	5.4157	1	2330300			90933	7990	63117	63220	101518	101518					0.032794765546668714
YLYYLLAS	8	Unmodified	_YLYYLLAS_					0	0	0			REV__ENST00000447253.1_1_10:13199146-13199323:-|nuORF	REV__ENST00000447253.1_1_10:13199146-13199323:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	503.2659912109375	2	503.268219	1004.52188	0.082226	4.1382E-05	-4.3807	-0.0022047	-4.2985	-0.0021633	503.265967777977	81.932	0.93671	81.739	81.295	82.231	-0.19334					57	21	4	0	0	0	0.71717	1	9856	9856		65.897	9.1764	1	1715000	+		90934	32642	63118	63221	101519	101519					0.019804373257670704
YMAELIERL	9	Oxidation (M)	_YM(Oxidation (M))AELIERL_		YM(1)AELIERL		YM(110)AELIERL	0	0	1		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	577.29931640625	2	577.299724	1152.5849	0.1979	0.00011425	0.29247	0.00016884	0.49037	0.00028309	577.2992815026028	61.691	0.75635	61.464	61.153	61.909	-0.22663					47	19	4	0	0	0	0.11727	2	7117	7117;7130		106.68	44.576	1	1420600			90935	3200	63119	63222	101520;101521	101520		121			0.014706350514870792
YMAELIERL	9	Oxidation (M)	_YM(Oxidation (M))AELIERL_		YM(1)AELIERL		YM(110)AELIERL	0	0	1		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	577.2998657226562	2	577.299724	1152.5849	-0.13762	-7.9446E-05	0.85699	0.00049474	0.71937	0.00041529	577.2995655945628	61.349	0.89931	61.42	60.985	61.884	0.071125					52	23	4	0	0	0	0.11727	1	7019	7019		106.68	28.419	1	1295100			90936	3200	63119	63222	101522	101522		121			0.014706350514870792
YMAELIERL	9	Oxidation (M)	_YM(Oxidation (M))AELIERL_					0	0	1		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.299724	1152.5849	-0.94354	-0.0005447	1.4201	0.00081983	0.47657	0.00027513	577.3000309334774	61.466	0.75784	61.466	61.216	61.974	0	-0.012791	0.00064229	NaN	106.68	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1178800			90937	3200	63119	63222				121			0.014706350514870792
YMAELIERL	9	Oxidation (M)	_YM(Oxidation (M))AELIERL_					0	0	1		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	577.299724	1152.5849	-0.091376	-5.2752E-05	0.94289	0.00054433	0.85152	0.00049158	577.2997695943485	61.753	0.41056	61.539	61.252	61.662	-0.21375	0.06055	9.13E-05	NaN	106.68	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153350			90938	3200	63119	63222				121			0.014706350514870792
YMAELIERL	9	Oxidation (M)	_YM(Oxidation (M))AELIERL_					0	0	1		ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	ENSG00000112312|ENST00000230056|GMNN	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	577.299724	1152.5849	-0.501	-0.00028923	0.66521	0.00038403	0.16422	9.4802E-05	577.2997296237787	61.76	0.48565	61.503	61.258	61.744	-0.25725	0.02449	-0.00022931	NaN	106.68	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189050			90939	3200	63119	63222				121			0.014706350514870792
YMAQTQSTNHM	11	Unmodified	_YMAQTQSTNHM_					0	0	0		ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	ENSG00000154240|ENST00000535342|CEP112	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.8538513183594	3	437.853395	1310.53836	-1.3564	-0.00059391	1.3222	0.00057892	-0.03424	-1.4992E-05	437.85386669856183	38.698	0.6489	38.534	38.285	38.934	-0.1648					46	17	5	0	0	0	0.97516	1	3222	3222		42.338	9.5875	1	1991100			90940	6393	63120	63223	101523	101523					-0.1044917284211806
YMCALCLLS	9	Unmodified	_YMCALCLLS_					0	0	0		ENST00000498309.1_1_5:132203011-132203167:+|nuORF	ENST00000498309.1_1_5:132203011-132203167:+|nuORF	ENST00000498309.1_1_5:132203011-132203167:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	509.2926940917969	2	508.734317	1015.45408	-0.1675	-8.5214E-05	-0.67764	-0.00034474	-0.84514	-0.00042995	508.7338197442327	53.46	0.43637	53.202	53.075	53.512	-0.25838					18	11	2	0	0	0	0.024386	1	5586	5586		52.299	37.434	1	177750			90941	15617	63121	63224	101524	101524					-0.053027951925741945
YMDKVQKMN	9	Unmodified	_YMDKVQKMN_					0	0	0			REV__ENSG00000118482|ENST00000262043|PHF3	REV__ENSG00000118482|ENST00000262043|PHF3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.2971801757812	2	578.778102	1155.54165	0.61176	0.00035407	2.1785	0.0012609	2.7902	0.0016149	579.2809450091445	99.235	0.47793	99.1	98.856	99.334	-0.13527					20	12	2	0	0	0	0.02435	1	12301	12301		51.335	19.381	1	45659	+		90942	22407	63122	63225	101525	101525					-0.02989877997424628
YMEEKVLPPS	10	Oxidation (M)	_YM(Oxidation (M))EEKVLPPS_		YM(1)EEKVLPPS		YM(42)EEKVLPPS	0	0	1		nc|ENSG00000124678|Q8WWU5-3|TCP11;nc|ENSG00000124678|Q8WWU5-6|TCP11;nc|ENSG00000124678|Q8WWU5-4|TCP11;ENSG00000124678|ENST00000311875|TCP11;nc|ENSG00000124678|Q8WWU5-5|TCP11;nc|ENSG00000124678|Q8WWU5-7|TCP11;ENST00000510465.5_1_6:35096565-35108647:-|nuORF	nc|ENSG00000124678|Q8WWU5-3|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	604.7947998046875	2	604.797014	1207.57948	-1.0266	-0.00062088	-4.3249	-0.0026157	-5.3515	-0.0032366	604.7944538836841	103.05	3.9117	103.05	101.23	105.14	-0.0046005					132	98	2	0	0	0	1.0271	1	13322	13322		42.396	9.6456	1	112870			90943	4068	63123	63226	101526	101526		160			-0.01601088530992456
YMERCIKY	8	Unmodified	_YMERCIKY_					0	0	0			REV__nc|ENSG00000198408|O60502-2|OGA	REV__nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.2614135742188	2	553.262087	1104.50962	-0.5528	-0.00030584	-0.53052	-0.00029352	-1.0833	-0.00059936	553.2616432470123	44.99	0.62307	44.737	44.468	45.091	-0.25252					39	15	5	0	0	0	0.89627	1	4231	4231		51.335	1.7994	1	1979400	+		90944	19186	63124	63227	101527	101527					-0.03845245680577136
YMGLDVVSY	9	Unmodified	_YMGLDVVSY_					0	0	0			REV__ENSG00000117479|ENST00000236137|SLC19A2	REV__ENSG00000117479|ENST00000236137|SLC19A2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.750732421875	2	523.746793	1045.47903	0.013411	7.0242E-06	4.0872	0.0021407	4.1006	0.0021477	523.7489043412066	39.705	0.91851	39.475	39.128	40.046	-0.23021					74	23	4	0	0	0	0.78069	1	3369	3369		40.573	1.7665	1	2871300	+		90945	22347	63125	63228	101528	101528					-0.04188700793974931
YMHPDSPNTGA	11	Unmodified	_YMHPDSPNTGA_					0	0	0		ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	MSMS	OPSCC_40_ClassI_Rep-1	4	595.2481689453125	2	595.250763	1188.48697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.743	1	70.471	69.971	70.971	-0.27185								0	0	0	1.0042	1	8240	8240		44.377	1.5129	1				90946	5027	63126	63229	101529	101529					-0.09973173544517522
YMIAPFGTEM	10	2 Oxidation (M)	_YM(Oxidation (M))IAPFGTEM(Oxidation (M))_		YM(1)IAPFGTEM(1)		YM(74)IAPFGTEM(74)	0	0	2			REV__nc|ENSG00000133101|P78396-2|CCNA1	REV__nc|ENSG00000133101|P78396-2|CCNA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	596.2561645507812	2	596.256668	1190.49878	-0.85103	-0.00050743	0.91274	0.00054423	0.061712	3.6796E-05	596.2570063738269	69.955	0.79088	69.688	69.368	70.159	-0.26724					56	18	4	0	0	0	0.62679	1	8133	8133		73.975	23.95	1	1964800	+		90947	36666	63127	63230	101530	101530		968;969			-0.08884692845526843
YMKSKEFFF	9	Unmodified	_YMKSKEFFF_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	613.7993774414062	2	613.79936	1225.58417	-0.41699	-0.00025595	0.51575	0.00031657	0.098767	6.0623E-05	613.7994156968526	70.914	0.66434	70.657	70.499	71.164	-0.25713					38	15	3	0	0	0	0.4752	1	8294	8294		60.972	2.742	1	896490			90948	8024	63128	63231	101531	101531					-0.019601595975473174
YMLEHVITL	9	Oxidation (M)	_YM(Oxidation (M))LEHVITL_		YM(1)LEHVITL		YM(94)LEHVITL	0	0	1		ENSG00000184445|ENST00000333479|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	568.300048828125	2	567.796817	1133.57908	-1.0182	-0.00057813	-0.1481	-8.4093E-05	-1.1663	-0.00066222	567.7971230629762	66.889	0.70912	66.913	66.601	67.31	0.023911					31	16	2	0	0	0	0.17455	1	7885	7885		94.006	23.19	1	904520			90949	9339	63129	63232	101532	101532		390			0.01763536539829147
YMLEHVITL	9	Oxidation (M)	_YM(Oxidation (M))LEHVITL_					0	0	1		ENSG00000184445|ENST00000333479|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		2	567.796817	1133.57908	-0.93512	-0.00053096	7.0277	0.0039903	6.0926	0.0034593	567.7969935788118	66.84	0.83907	66.84	66.487	67.326	0	-0.036295	0.0067934	NaN	94.006	51	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1207200			90950	9339	63129	63232				390			0.01763536539829147
YMLEKQCRL	9	Unmodified	_YMLEKQCRL_					0	0	0		ENST00000261220.13_2_12:95905691-95905748:+|nuORF	ENST00000261220.13_2_12:95905691-95905748:+|nuORF	ENST00000261220.13_2_12:95905691-95905748:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	592.3032836914062	2	592.301744	1182.58893	-0.3386	-0.00020055	3.4367	0.0020356	3.0981	0.001835	592.3036458015121	84.158	0.84755	84.184	83.858	84.705	0.026558					52	19	3	0	0	0	0.096521	1	10448	10448		111.65	8.8749	1	1141200			90951	11463	63130	63233	101533	101533					0.004944012735677461
YMLLSQVGKL	10	Unmodified	_YMLLSQVGKL_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	577.2652587890625	2	576.328285	1150.64202	1.8599	0.0010719	1.6083	0.00092693	3.4682	0.0019988	576.3291751423305	24.563	0.34921	24.382	24.198	24.547	-0.18089					12	7	2	0	0	0	0.03519	1	1050	1050		23.523	0.48021	1	84833	+		90952	28689	63131	63234	101534	101534					0.07272102327874563
YMLLSQVGKL	10	Unmodified	_YMLLSQVGKL_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	576.328285	1150.64202	-0.15018	-8.6555E-05	3.1352	0.0018069	2.985	0.0017204	576.3302079411103	24.468	0.32071	24.546	24.364	24.685	0.078344	0.081977	0.0012968	NaN	23.523	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17714	+		90953	28689	63131	63234							0.07272102327874563
YMLPADYNL	9	Unmodified	_YMLPADYNL_					0	0	0		nc|ENSG00000100271|O95922-4|TTLL1;ENSG00000100271|ENST00000266254|TTLL1	nc|ENSG00000100271|O95922-4|TTLL1	nc|ENSG00000100271|O95922-4|TTLL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2616577148438	2	550.260068	1098.50558	-0.039856	-2.1931E-05	2.8564	0.0015718	2.8165	0.0015498	550.2615259232589	91.344	1.0038	91.355	91.074	92.077	0.011276					60	23	3	0	0	0	0.50848	1	11519	11519		58.782	0.97068	1	3694700			90954	2164	63132	63235	101535	101535					-0.03973011902667167
YMLTLEDHY	9	Unmodified	_YMLTLEDHY_					0	0	0		nc|ENSG00000065989|P27815-5|PDE4A;ENST00000590407.1_1_19:10569976-10577573:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A	nc|ENSG00000065989|P27815-5|PDE4A	nc|ENSG00000065989|P27815-5|PDE4A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.7708129882812	2	592.768257	1183.52196	-0.0011961	-7.09E-07	2.2707	0.001346	2.2695	0.0013453	592.769621256365	70.809	0.79736	70.594	70.377	71.174	-0.21425					31	19	2	0	0	0	0.36105	1	8256	8256		68.485	10.673	1	1056700			90955	1326	63133	63236	101536	101536					-0.06245930736554328
YMNKVELEA	9	Unmodified	_YMNKVELEA_					0	0	0		KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;KRT5|p.E385Lfs*2|1|0.06|ENSG00000186081|chr12:52517168-52517172|ATCTC/-|frameshift_variant;KRT5|p.N301Kfs*8|1|0.33|ENSG00000186081|chr12:52517921-52517922|-/T|frameshift_variant;KRT75|p.V274A|1|0.18|ENSG00000170454|chr12:52431592-52431592|A/G|missense_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant;CON__Q922U2	KRT5|p.E452Vfs*7|1|0.14|ENSG00000186081|chr12:52516721-52516722|-/CA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	549.2754516601562	2	548.7708	1095.52705	-0.27227	-0.00014942	-0.7911	-0.00043413	-1.0634	-0.00058355	548.7704801084042	46.794	0.59579	46.794	46.515	47.111	0					21	15	2	0	0	0	0.024359	1	4641	4641		65.465	27.654	1	2284400		+	90956	520;569	63134	63237	101537	101537					-0.01689626873940142
YMPIISIFD	9	Unmodified	_YMPIISIFD_					0	0	0			REV__ENSG00000188886|ENST00000342380|ASTL	REV__ENSG00000188886|ENST00000342380|ASTL	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.7792358398438	2	549.780636	1097.54672	-0.22807	-0.00012539	-3.5257	-0.0019384	-3.7538	-0.0020638	549.7790481038564	102.27	0.89803	102.26	101.93	102.83	-0.0054474					64	20	4	0	0	0	0.4752	1	13045	13045		60.972	7.6205	1	800720	+		90957	28075	63135	63238	101538	101538					0.0018474913683803607
YMPSHLRPY	9	Unmodified	_YMPSHLRPY_					0	0	0			REV__ENSG00000204688|ENST00000377133|OR2H1	REV__ENSG00000204688|ENST00000377133|OR2H1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	582.2866821289062	2	582.286951	1162.55935	-0.19385	-0.00011288	-3.6644	-0.0021337	-3.8582	-0.0022466	582.2846056904116	83.865	0.81497	83.726	83.465	84.28	-0.1386					56	18	4	0	0	0	0.43973	1	10132	10132		63.306	2.3343	1	667230	+		90958	28632	63136	63239	101539	101539					-0.015427946802901715
YMQHEDLNEV	10	Oxidation (M)	_YM(Oxidation (M))QHEDLNEV_		YM(1)QHEDLNEV		YM(57)QHEDLNEV	0	0	1			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	431.8523254394531	3	431.852049	1292.53432	0.16788	7.2501E-05	0.074457	3.2155E-05	0.24234	0.00010466	431.8520622260543	45.928	1.9527	45.98	45.655	47.607	0.051395					172	55	6	0	0	0	0.86089	1	4421	4421		56.632	7.0962	1	18969000	+		90959	25017	63137	63240	101540	101540		739			-0.10024939064169303
YMREHNQL	8	Oxidation (M)	_YM(Oxidation (M))REHNQL_		YM(1)REHNQL		YM(57)REHNQL	0	0	1		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	553.7557373046875	2	553.756015	1105.49748	-0.54974	-0.00030442	0.184	0.00010189	-0.36574	-0.00020253	553.7560845212123	22.623	1.3678	22.437	22.189	23.557	-0.18539					66	30	4	0	0	0	0.83003	2	837	815;837		56.721	14.247	1	1263100			90960	38151	63138	63241	101541;101542	101542		995			-0.05105146099413105
YMREHNQL	8	Unmodified	_YMREHNQL_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.7584838867188	2	545.758558	1089.50256	-0.37848	-0.00020656	0.30188	0.00016475	-0.076598	-4.1804E-05	545.7586653645022	25.756	0.93365	25.585	25.288	26.222	-0.17078					53	25	5	0	0	0	0.42912	2	1252	1252;1264		93.195	38.419	1	2923600			90961	38151	63138	63242	101543;101544	101543					-0.038608422367815365
YMREHNQL	8	Unmodified	_YMREHNQL_					0	0	0		WDR36-GPNMB|1|fusion;WDR36-GPNMB|2|fusion;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	WDR36-GPNMB|1|fusion	WDR36-GPNMB|1|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.7583618164062	2	545.758558	1089.50256	-1.2454	-0.00067968	1.0656	0.00058158	-0.17974	-9.8095E-05	545.7590736566096	25.799	0.94331	25.628	25.282	26.226	-0.17151					47	25	4	0	0	0	0.62178	1	1228	1228		74.255	15.473	1	2370300			90962	38151	63138	63242	101545	101545					-0.038608422367815365
YNEIAGKKIL	10	Unmodified	_YNEIAGKKIL_					0	0	0		ARFGEF1|p.S883L|1|0.08|ENSG00000066777|chr8:67253501-67253501|G/A|missense_variant	ARFGEF1|p.S883L|1|0.08|ENSG00000066777|chr8:67253501-67253501|G/A|missense_variant	ARFGEF1|p.S883L|1|0.08|ENSG00000066777|chr8:67253501-67253501|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.834228515625	2	574.837331	1147.66011	0.33217	0.00019094	-4.4331	-0.0025483	-4.1009	-0.0023574	574.8350371067661	106.01	0.79631	105.85	105.56	106.35	-0.16132					78	35	4	0	0	0	1.0616	1	13200	13200		37.812	9.9293	1	249170			90963	115	63139	63243	101546	101546					0.0921856057423156
YNFLLFDM	8	Unmodified	_YNFLLFDM_					0	0	0			REV__ENSG00000180767|ENST00000319340|CHST13	REV__ENSG00000180767|ENST00000319340|CHST13	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.8169555664062	2	531.751879	1061.4892	0.16014	8.5153E-05	1.4983	0.00079672	1.6584	0.00088188	532.2543027462195	86.512	0.12962	86.37	86.278	86.407	-0.14217					4	2	2	0	0	0	0.027866	1	10501	10501		40.573	7.057	1	15406	+		90964	27360	63140	63244	101547	101547					-0.039080930687305226
YNGPLNECT	9	Unmodified	_YNGPLNECT_					0	0	0			REV__nc|ENSG00000134376|P82279-5|CRB1	REV__nc|ENSG00000134376|P82279-5|CRB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.71380615234375	2	505.716024	1009.4175	-0.54029	-0.00027323	-3.3178	-0.0016779	-3.8581	-0.0019511	505.7144135483818	29.07	1.2607	28.92	28.324	29.584	-0.14952					87	29	5	0	0	0	0.72875	1	1743	1743		44.117	6.9577	1	1678400	+		90965	19614	63141	63245	101548	101548					-0.0868363249325057
YNGVNIIDL	9	Unmodified	_YNGVNIIDL_					0	0	0		nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	510.76971435546875	2	510.771657	1019.52876	-0.51318	-0.00026212	1.6727	0.00085437	1.1595	0.00059225	510.77191318983137	84.198	0.68934	84.198	83.692	84.381	0					36	15	3	0	0	0	0.096521	1	10521	10521		111.65	4.6408	1	6165700			90966	6448	63142	63246	101549	101549					0.019777502063448082
YNHWFDGL	8	Unmodified	_YNHWFDGL_					0	0	0		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	526.2298583984375	2	526.235242	1050.45593	-0.064158	-3.3762E-05	-3.685	-0.0019392	-3.7492	-0.0019729	526.2331110464029	50.275	0.56525	50.17	49.856	50.422	-0.10558					46	14	5	0	0	0	0.59392	1	5132	5132		76.847	8.0598	1	2307400			90967	4923	63143	63247	101550	101550					-0.06727958796409439
YNIFRSTF	8	Unmodified	_YNIFRSTF_					0	0	0		nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2680053710938	2	524.266542	1046.51853	0.30757	0.00016125	2.5777	0.0013514	2.8853	0.0015126	524.2677858721994	43.313	1.6202	43.344	42.646	44.266	0.030823					134	44	5	0	0	0	0.37125	2	3996	3983;3996		101.21	7.2051	1	6592900			90968	10053	63144	63248	101551;101552	101552					-0.0028681272824542248
YNIMMHEGF	9	Unmodified	_YNIMMHEGF_					0	0	0		ZNF462-RAD23B|1|fusion;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462	ZNF462-RAD23B|1|fusion	ZNF462-RAD23B|1|fusion	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	571.273681640625	2	571.243895	1140.47324	0.33652	0.00019223	-4.0233	-0.0022983	-3.6868	-0.0021061	571.242270160232	56.63	0.31421	56.405	56.347	56.661	-0.2248					9	7	2	0	0	0	0.024523	1	6147	6147		37.159	11.709	1	209270			90969	38192	63145	63249	101553	101553					-0.09138122577292052
YNKGNLLSV	9	Unmodified	_YNKGNLLSV_					0	0	0			REV__ENST00000601116.5_1_19:42056650-42056725:+|nuORF	REV__ENST00000601116.5_1_19:42056650-42056725:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	504.76702880859375	2	504.279649	1006.54475	-0.11054	-5.5745E-05	-1.1558	-0.00058284	-1.2663	-0.00063859	504.27898650833953	64.174	0.63235	63.981	63.798	64.43	-0.19243					22	15	2	0	0	0	0.024473	1	7273	7273		41.427	23.959	1	121610	+		90970	35854	63146	63250	101554	101554					0.0417345644324314
YNKRFLAR	8	Unmodified	_YNKRFLAR_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	534.2738037109375	2	534.309075	1066.6036	-1.2803	-0.00068408	3.6709	0.0019614	2.3906	0.0012773	534.3109550557712	83.656	0.3877	83.656	83.435	83.823	0					11	8	2	0	0	0	0.027866	1	10433	10433		24.203	0	1	43766			90971	6437	63147	63251	101555	101555					0.07295977528224284
YNKRFLAR	8	Unmodified	_YNKRFLAR_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	534.309075	1066.6036	-1.0011	-0.00053492	3.895	0.0020811	2.8938	0.0015462	534.3108167928602	83.718	0.34422	83.628	83.469	83.813	-0.090454	0.15954	0.0014116	NaN	30.504	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47047			90972	6437	63147	63251							0.07295977528224284
YNKRFLAR	8	Unmodified	_YNKRFLAR_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	534.309075	1066.6036	0.4312	0.00023039	2.1517	0.0011497	2.5829	0.0013801	534.3103189166118	83.584	0.55281	83.372	83.006	83.558	-0.21159	-0.095908	-0.00045133	NaN	30.504	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117510			90973	6437	63147	63251							0.07295977528224284
YNKRFLAR	8	Unmodified	_YNKRFLAR_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	534.309075	1066.6036	0.068098	3.6385E-05	2.3539	0.0012577	2.422	0.0012941	534.3103204013681	83.493	0.49998	83.324	83.033	83.533	-0.16915	-0.1443	-0.00023521	NaN	30.504	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118350			90974	6437	63147	63251							0.07295977528224284
YNKRFLAR	8	Unmodified	_YNKRFLAR_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	534.309075	1066.6036	-0.26046	-0.00013917	2.7229	0.0014549	2.4624	0.0013157	534.310530146937	83.5	0.46327	83.361	83.124	83.588	-0.1386	-0.10728	0.00015908	NaN	30.504	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103360			90975	6437	63147	63251							0.07295977528224284
YNLQLQHY	8	Unmodified	_YNLQLQHY_					0	0	0		nc|ENSG00000104218|Q1MSJ5-2|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF	nc|ENSG00000104218|Q1MSJ5-2|CSPP1	nc|ENSG00000104218|Q1MSJ5-2|CSPP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.7646484375	2	539.769448	1077.52434	-0.17394	-9.3887E-05	-3.0972	-0.0016718	-3.2711	-0.0017656	539.7673647911557	49.728	0.6357	49.623	49.221	49.856	-0.10558					26	16	2	0	0	0	0.027866	1	5044	5044		44.531	22.829	1	386930			90976	2553	63148	63252	101556	101556					-0.011317142165808036
YNLRQRKTV	9	Unmodified	_YNLRQRKTV_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.3427124023438	2	589.343646	1176.67274	-1.9349	-0.0011403	0.58223	0.00034313	-1.3526	-0.00079717	589.3438205053908	92.719	2.8841	92.576	91.661	94.545	-0.14356					306	67	6	0	0	0	0.96322	1	11582	11582		27.882	1.1893	1	15816000			90977	3767	63149	63253	101557	101557					0.09147016757128767
YNMFQHQSLG	10	Unmodified	_YNMFQHQSLG_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17;nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF	ENSG00000140470|ENST00000268070|ADAMTS17;nc|ENSG00000140470|Q8TE56-2|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	612.7724609375	2	612.776948	1223.53934	-0.61339	-0.00037587	-3.5054	-0.002148	-4.1188	-0.0025239	612.7747820817855	51.002	0.60628	50.891	50.563	51.169	-0.11163					52	15	4	0	0	0	0.59716	1	5249	5249		77.318	6.5014	1	8530500			90978	5415;13252	63150	63254	101558	101558					-0.06348590410902943
YNPNVNAGII	10	Unmodified	_YNPNVNAGII_					0	0	0		ENSG00000147485|ENST00000356297|PXDNL;nc|ENSG00000147485|A1KZ92-2|PXDNL;nc|ENSG00000147485|A1KZ92-3|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	ENSG00000147485|ENST00000356297|PXDNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	537.7969360351562	2	537.782556	1073.55056	-0.93524	-0.00050295	0.80568	0.00043328	-0.12956	-6.9673E-05	538.2853484352967	77.684	0.20197	77.7	77.578	77.78	0.015907					7	4	2	0	0	0	0.03519	1	9511	9511		42.396	8.2236	1	31866			90979	5972	63151	63255	101559	101559					0.016725549548937124
YNQPERLY	8	Unmodified	_YNQPERLY_					0	0	0			REV__ENSG00000159915|ENST00000683810|ZNF233	REV__ENSG00000159915|ENST00000683810|ZNF233	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	542.28125	2	541.766906	1081.51926	-0.93193	-0.00050489	-0.08411	-4.5568E-05	-1.016	-0.00055045	541.7670853093153	52.333	0.42445	52.149	51.889	52.314	-0.18405					16	10	2	0	0	0	0.027866	1	5406	5406		27.882	6.9353	1	139200	+		90980	25281	63152	63256	101560	101560					-0.018240180791963212
YNQSTCLLKL	10	Unmodified	_YNQSTCLLKL_					0	0	0			REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	591.8115844726562	2	591.812999	1181.61144	-0.22067	-0.00013059	-2.6091	-0.0015441	-2.8298	-0.0016747	591.8113856715833	96.408	1.0382	96.415	96.107	97.146	0.0065002					64	23	5	0	0	0	0.31896	2	12269	12269;12295		107.01	10.926	1	953420	+		90981	34868	63153	63257	101561;101562	101561					0.027903239428269444
YNQSTCLLKL	10	Unmodified	_YNQSTCLLKL_					0	0	0			REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	REV__ENST00000547718.5_1_12:117186478-117290514:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.811279296875	2	591.812999	1181.61144	1.3439	0.00079532	-4.1759	-0.0024714	-2.832	-0.001676	591.8104171066905	96.501	1.0438	96.503	96.194	97.237	0.0020676					67	23	4	0	0	0	0.31896	1	12224	12224		107.01	2.9507	1	919760	+		90982	34868	63153	63257	101563	101563					0.027903239428269444
YNQTDGDLLV	10	Unmodified	_YNQTDGDLLV_					0	0	0			REV__BTBD9|p.A294V|1|0.22|ENSG00000183826|chr6:38580371-38580371|G/A|missense_variant	REV__BTBD9|p.A294V|1|0.22|ENSG00000183826|chr6:38580371-38580371|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	569.2825927734375	2	569.274761	1136.53497	-1.108	-0.00063075	4.4049	0.0025076	3.2969	0.0018768	569.2769780262627	79.841	2.7082	79.669	79.15	81.858	-0.17225					169	65	4	0	0	0	1.0236	1	9899	9899		42.864	0.46813	1	2401400	+		90983	19222	63154	63258	101564	101564					-0.02783776352816858
YNSLMKISE	9	Unmodified	_YNSLMKISE_					0	0	0		ENSG00000255974|ENST00000301141|CYP2A6;ENSG00000197838|ENST00000330436|CYP2A13	ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000255974|ENST00000301141|CYP2A6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.302978515625	2	542.7708	1083.52705	-1.3072	-0.00070953	0.022905	1.2432E-05	-1.2843	-0.0006971	543.2732453598561	74.363	0.34181	74.373	74.18	74.522	0.0096512					11	7	2	0	0	0	0.020937	1	9035	9035		87.696	25.589	1	115030			90984	10900	63155	63259	101565	101565					-0.011376268739468287
YNSNLFFW	8	Unmodified	_YNSNLFFW_					0	0	0		CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant;ENSG00000106066|ENST00000265394|CPVL	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	CPVL|p.K265Sfs*11|1|0.38|ENSG00000106066|chr7:29071843-29071843|T/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	545.805908203125	2	545.753267	1089.49198	-0.32244	-0.00017597	-1.8833	-0.0010278	-2.2057	-0.0012038	545.7511827254198	73.004	0.21487	72.739	72.595	72.81	-0.26479					6	4	2	0	0	0	0.027866	1	8558	8558		47.916	0	1	34851			90985	582	63156	63260	101566	101566					-0.049185016195679054
YNSSCMCQC	9	Unmodified	_YNSSCMCQC_					0	0	0		ENST00000445430.5_1_3:195412816-195412894:+|nuORF	ENST00000445430.5_1_3:195412816-195412894:+|nuORF	ENST00000445430.5_1_3:195412816-195412894:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	519.8207397460938	2	519.661023	1037.30749	-0.92499	-0.00048068	2.1609	0.0011229	1.2359	0.00064227	520.6671387489279	80.726	0.31721	80.726	80.544	80.861	0					14	7	3	0	0	0	0.024541	1	10016	10016		17.365	11.807	1	122350			90986	14443	63157	63261	101567	101567					-0.20966840419941946
YNTEILKSI	9	Unmodified	_YNTEILKSI_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.8011474609375	2	540.800414	1079.58628	0.99354	0.00053731	-2.4151	-0.0013061	-1.4215	-0.00076876	540.7991119223065	59.354	0.46794	59.154	58.888	59.356	-0.20016					24	12	3	0	0	0	0.32811	1	6739	6739		71.877	2.2498	1	5897600			90987	6146	63158	63262	101568	101568					0.04966592411892634
YNTEILKSI	9	Unmodified	_YNTEILKSI_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	540.800414	1079.58628	0.077124	4.1709E-05	-1.7257	-0.00093324	-1.6485	-0.00089153	540.7990227419247	59.433	0.61077	59.236	58.809	59.42	-0.19742	0.065507	0.00027468	NaN	71.877	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	957130			90988	6146	63158	63262							0.04966592411892634
YNTEILKSI	9	Unmodified	_YNTEILKSI_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	540.800414	1079.58628	0.19032	0.00010293	-1.6266	-0.00087966	-1.4363	-0.00077674	540.799036647649	59.319	0.64598	59.138	58.71	59.356	-0.18134	-0.032401	0.00038183	NaN	71.877	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920020			90989	6146	63158	63262							0.04966592411892634
YNTEILKSI	9	Unmodified	_YNTEILKSI_					0	0	0		ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	ENSG00000150630|ENST00000618562|VEGFC	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	540.800414	1079.58628	-0.50039	-0.00027061	-1.3615	-0.00073627	-1.8618	-0.0010069	540.7991003972959	59.462	0.7636	59.213	58.693	59.457	-0.24842	0.043148	0.00066862	NaN	71.877	34	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	903590			90990	6146	63158	63262							0.04966592411892634
YNTFSSLYF	9	Unmodified	_YNTFSSLYF_					0	0	0		nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	nc|ENSG00000288611|P48145|NPBWR1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	571.3104248046875	2	571.263665	1140.51278	0.26386	0.00015073	0.28848	0.0001648	0.55234	0.00031553	571.2637126448665	74.814	0.367	74.539	74.396	74.763	-0.27573					10	8	2	0	0	0	0.02435	1	8827	8827		60.972	28.16	1	123750			90991	18819	63159	63263	101569	101569					-0.051859560305729246
YNYLGRKEL	9	Unmodified	_YNYLGRKEL_					0	0	0			REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	578.3092041015625	2	578.31148	1154.60841	-0.21211	-0.00012267	-1.735	-0.0010034	-1.9471	-0.001126	578.3103444438724	108.71	0.2871	108.71	108.6	108.88	0.0047836					28	14	2	0	0	0	0.96906	1	13790	13790		26.693	2.1737	1	2750900	+		90992	31710	63160	63264	101570	101570					0.03728816880334307
YNYLGRKEL	9	Unmodified	_YNYLGRKEL_					0	0	0			REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	578.31148	1154.60841	0.057796	3.3424E-05	-1.8361	-0.0010618	-1.7783	-0.0010284	578.3102783944026	108.65	0.39943	108.65	108.5	108.9	0	-0.029784	-0.00018275	NaN	26.693	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2250900	+		90993	31710	63160	63264							0.03728816880334307
YNYLGRKEL	9	Unmodified	_YNYLGRKEL_					0	0	0			REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	578.31148	1154.60841	-0.16524	-9.5562E-05	-1.8468	-0.001068	-2.012	-0.0011636	578.3103913146721	108.68	0.38799	108.67	108.45	108.84	-0.0075684	-0.011677	-0.00019511	NaN	26.693	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3690700	+		90994	31710	63160	63264							0.03728816880334307
YNYLGRKEL	9	Unmodified	_YNYLGRKEL_					0	0	0			REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	578.31148	1154.60841	-0.21211	-0.00012267	-1.735	-0.0010034	-1.9471	-0.001126	578.3103444438724	108.71	0.2871	108.71	108.6	108.88	0.0047836	0.030443	-6.5808E-05	NaN	26.693	28	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2750900	+		90995	31710	63160	63264							0.03728816880334307
YNYLGRKEL	9	Unmodified	_YNYLGRKEL_					0	0	0			REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	578.31148	1154.60841	-0.063534	-3.6743E-05	-2.0102	-0.0011625	-2.0737	-0.0011992	578.3101927784271	108.81	0.32955	108.69	108.58	108.91	-0.1239	0.0089642	-0.00038409	NaN	26.693	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1367200	+		90996	31710	63160	63264							0.03728816880334307
YNYLGRKEL	9	Unmodified	_YNYLGRKEL_					0	0	0			REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	578.31148	1154.60841	-1.7502	-0.0010122	-0.35126	-0.00020314	-2.1014	-0.0012153	578.3111437080064	108.81	0.26564	108.67	108.55	108.81	-0.13821	-0.006946	0.0015346	NaN	26.693	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2060400	+		90997	31710	63160	63264							0.03728816880334307
YNYLGRKEL	9	Unmodified	_YNYLGRKEL_					0	0	0			REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	REV__ENST00000395699.3_1_7:44923435-44923531:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	578.31148	1154.60841	0.23071	0.00013342	-2.0905	-0.001209	-1.8598	-0.0010756	578.3102572226194	108.84	0.23425	108.69	108.6	108.83	-0.15141	0.0089999	-0.00047704	NaN	26.693	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1774900	+		90998	31710	63160	63264							0.03728816880334307
YNYMSVYDP	9	Unmodified	_YNYMSVYDP_					0	0	0			REV__sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	REV__sp|P25214|TRX2_EBVB9Triplexcapsidprotein2OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=TRX2PE=1SV=1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	576.2409057617188	2	576.239332	1150.46411	-0.023749	-1.3685E-05	1.9009	0.0010954	1.8772	0.0010817	576.2406530497246	68.815	1.9634	68.572	68.187	70.151	-0.24277					168	47	6	0	0	0	0.6504	1	7947	7947		49.442	0	1	20901000	+		90999	37566	63161	63265	101571	101571					-0.10510192661968176
YPAEKPKQSD	10	Unmodified	_YPAEKPKQSD_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	581.7909545898438	2	581.790578	1161.5666	-0.99099	-0.00057655	1.9234	0.001119	0.93239	0.00054246	581.7915538773751	41.5	1.0996	41.5	41.189	42.289	0					79	31	4	0	0	0	0.91678	1	3743	3743		52.937	5.709	1	2383500			91000	1967	63162	63266	101572	101572					-0.007717835988614752
YPAEKPKQSD	10	Unmodified	_YPAEKPKQSD_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	581.791259765625	2	581.790578	1161.5666	-0.94501	-0.0005498	1.9609	0.0011408	1.0159	0.00059102	581.7915881732735	41.66	0.96737	41.528	41.215	42.183	-0.13219					82	27	4	0	0	0	0.91678	1	3754	3754		52.937	0	1	2003000			91001	1967	63162	63266	101573	101573					-0.007717835988614752
YPAEKPKQSD	10	Unmodified	_YPAEKPKQSD_					0	0	0		nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.D2799Ifs*35|1|0.55|ENSG00000091656|chr8:76855314-76855314|C/-|frameshift_variant	nc|ENSG00000091656|Q86UP3|ZFHX4	nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	581.790578	1161.5666	0.1299	7.5577E-05	0.76975	0.00044783	0.89966	0.00052341	581.7909446531277	41.73	0.92591	41.753	41.464	42.39	0.023006	0.15949	-0.00084197	NaN	52.937	77	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1960600			91002	1967	63162	63266							-0.007717835988614752
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	538.2984619140625	2	538.298373	1074.58219	-0.5878	-0.00031641	0.60436	0.00032533	0.01656	8.9144E-06	538.2986056311731	27.774	1.162	27.531	27.163	28.325	-0.24217					74	27	4	0	0	0	0.27161	1	1558	1558		79.451	5.4763	1	1068800			91003	9353	63163	63267	101574	101574					0.047885477088584594
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	538.2984008789062	2	538.298373	1074.58219	-1.0919	-0.00058775	1.0067	0.00054189	-0.08519	-4.5858E-05	538.2988484058436	27.635	1.0323	27.467	27.099	28.132	-0.16816					61	24	4	0	0	0	0.23085	1	1536	1536		84.916	2.675	1	1052700			91004	9353	63163	63267	101575	101575					0.047885477088584594
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	538.2984619140625	2	538.298373	1074.58219	-1.0173	-0.00054764	0.98877	0.00053225	-0.028582	-1.5386E-05	538.2988352384115	27.739	1.0508	27.582	27.266	28.317	-0.15664					61	25	4	0	0	0	0.1158	1	1528	1528		107.01	24.702	1	1235100			91005	9353	63163	63267	101576	101576					0.047885477088584594
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	538.298373	1074.58219	-1.0395	-0.00055955	1.8296	0.0009849	0.79016	0.00042534	538.2987122379134	27.704	1.1835	27.704	27.179	28.362	0	0.1296	0.00088975	NaN	107.01	70	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621360			91006	9353	63163	63267							0.047885477088584594
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	538.298373	1074.58219	-0.93269	-0.00050207	0.45887	0.00024701	-0.47382	-0.00025506	538.2985944728375	27.665	1.1868	27.652	27.134	28.321	-0.012983	0.077566	-0.00058603	NaN	107.01	72	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676810			91007	9353	63163	63267							0.047885477088584594
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	538.298373	1074.58219	-1.5075	-0.00081148	1.4925	0.00080341	-0.014992	-8.0699E-06	538.2990127894798	27.43	1.1774	27.511	27.031	28.208	0.081291	-0.063312	0.00052678	NaN	107.01	56	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733110			91008	9353	63163	63267							0.047885477088584594
YPAQAMTPTIY	11	Unmodified	_YPAQAMTPTIY_					0	0	0			REV__ENSG00000064393|ENST00000406875|HIPK2	REV__ENSG00000064393|ENST00000406875|HIPK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	419.2508850097656	3	419.205763	1254.59546	0.98727	0.00041387	0.04045	1.6957E-05	1.0277	0.00043083	419.2056759735572	25.147	1.0179	24.975	24.732	25.75	-0.17151					37	23	3	0	0	0	0.024735	1	1246	1246		38.754	12.69	1	315630	+		91009	20284	63164	63268	101577	101577					-0.021653822940606915
YPARLLDSI	9	Unmodified	_YPARLLDSI_					0	0	0		ENSG00000169946|ENST00000407775|ZFPM2;nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENST00000522296.1_1_8:106801010-106807985:+|nuORF	ENSG00000169946|ENST00000407775|ZFPM2	ENSG00000169946|ENST00000407775|ZFPM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	524.2971801757812	2	524.295299	1046.57605	-0.31499	-0.00016515	4.1351	0.002168	3.8202	0.0020029	524.2973676751948	100.38	1.3018	100.39	99.91	101.21	0.010117					96	32	5	0	0	0	0.35646	1	12799	12799		68.787	0	1	2834100			91010	7993	63165	63269	101578	101578					0.05462029477325814
YPARLLDSI	9	Unmodified	_YPARLLDSI_					0	0	0		ENSG00000169946|ENST00000407775|ZFPM2;nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENST00000522296.1_1_8:106801010-106807985:+|nuORF	ENSG00000169946|ENST00000407775|ZFPM2	ENSG00000169946|ENST00000407775|ZFPM2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	524.2973022460938	2	524.295299	1046.57605	0.21582	0.00011315	3.9132	0.0020517	4.129	0.0021648	524.2972521633124	103.11	1.6176	103.1	102.68	104.29	-0.0046005					104	39	5	0	0	0	0.35646	1	13138	13138		68.787	0	1	4345800			91011	7993	63165	63269	101579	101579					0.05462029477325814
YPARRGPQL	9	Unmodified	_YPARRGPQL_					0	0	0		ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	529.29833984375	2	529.298707	1056.58286	-0.72694	-0.00038477	-1.0189	-0.00053929	-1.7458	-0.00092407	529.2978580924387	30.732	1.0476	30.742	30.415	31.463	0.0098057					35	24	2	0	0	0	0.29104	1	1989	1989		76.847	5.5509	1	2534700			91012	1237	63166	63270	101580	101580					0.05683387148565089
YPASAGTSL	9	Unmodified	_YPASAGTSL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000468304.1_1_7:75510799-75517664:+|nuORF;nc|ENSG00000005486|Q6NTF9-3|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	433.71630859375	2	433.71635	865.418148	-0.1012	-4.3893E-05	0.29974	0.00013	0.19854	8.6109E-05	433.716372972113	47.5	1.4042	47.5	47.181	48.585	0					95	41	4	0	0	0	0.021668	4	4773	4750;4761;4773;4787		148.21	41.791	1	7414400			91013	772	63167	63271	101581;101582;101583;101584	101583					-0.019944697818914392
YPASAGTSL	9	Unmodified	_YPASAGTSL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000468304.1_1_7:75510799-75517664:+|nuORF;nc|ENSG00000005486|Q6NTF9-3|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	433.7162780761719	2	433.71635	865.418148	0.086389	3.7469E-05	0.18236	7.9094E-05	0.26875	0.00011656	433.7163036275731	47.637	1.0675	47.484	47.125	48.193	-0.15301					80	31	4	0	0	0	0.040175	3	4757	4757;4767;4780		133.47	32.257	1	6890500			91014	772	63167	63271	101585;101586;101587	101585					-0.019944697818914392
YPASAGTSL	9	Unmodified	_YPASAGTSL_					0	0	0		ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000468304.1_1_7:75510799-75517664:+|nuORF;nc|ENSG00000005486|Q6NTF9-3|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	ENSG00000005486|ENST00000006777|RHBDD2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	433.71624755859375	2	433.71635	865.418148	-0.52098	-0.00022596	0.69124	0.0002998	0.17026	7.3843E-05	433.7165402116131	47.444	1.1148	47.503	47.179	48.294	0.059093					78	32	4	0	0	0	0.040175	3	4681	4681;4692;4718		133.47	30.696	1	8043700			91015	772	63167	63271	101588;101589;101590	101588					-0.019944697818914392
YPDPYSRASL	10	Unmodified	_YPDPYSRASL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	584.784912109375	2	584.785296	1167.55604	-1.3926	-0.00081437	1.6761	0.00098018	0.28353	0.0001658	584.7863254287377	52.375	1.0876	52.375	51.702	52.789	0					84	28	4	0	0	0	0.34816	1	5603	5603		104.01	10.818	1	2305900			91016	10947	63168	63272	101591	101591					-0.021037662532762624
YPDPYSRASL	10	Unmodified	_YPDPYSRASL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	584.7847900390625	2	584.785296	1167.55604	-0.95671	-0.00055947	1.278	0.00074734	0.32126	0.00018787	584.7860241517681	52.395	1.0442	52.247	51.676	52.72	-0.14729					85	27	4	0	0	0	0.24941	2	5602	5590;5602		114.89	21.751	1	2184600			91017	10947	63168	63272	101592;101593	101593					-0.021037662532762624
YPDPYSRASL	10	Unmodified	_YPDPYSRASL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L1663Rfs*50|1|0.14|ENSG00000261150|chr8:143868261-143868267|GGAAGAG/-|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	584.78515625	2	584.785296	1167.55604	0.028822	1.6855E-05	0.25406	0.00014857	0.28289	0.00016543	584.785481160241	52.208	1.1387	52.3	51.649	52.788	0.091938					83	29	4	0	0	0	0.24941	3	5514	5504;5514;5526		114.89	26.718	1	1898200			91018	10947	63168	63272	101594;101595;101596	101595					-0.021037662532762624
YPEELKPVL	9	Unmodified	_YPEELKPVL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	544.3054809570312	2	544.305332	1086.59611	-0.54552	-0.00029693	-0.80452	-0.0004379	-1.35	-0.00073483	544.3045954799354	60.193	2.8391	60.193	58.193	61.032	0					88	55	2	0	0	0	0.03849	2	6921	6921;6932		134.81	19.317	1	4990700			91019	1685	63169	63273	101597;101598	101597					0.056277804172850665
YPEELKPVL	9	Unmodified	_YPEELKPVL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	OPSCC_39_ClassI_Rep-2	2	544.3047485351562	2	544.305332	1086.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.5	1	60.286	59.786	60.786	-0.21339								0	0	0	0.047455	1	6926	6926		110.12	22.366	1				91020	1685	63169	63273	101599	101599					0.056277804172850665
YPEELKPVL	9	Unmodified	_YPEELKPVL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	OPSCC_39_ClassI_Rep-2	2	544.3051147460938	2	544.305332	1086.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.56	1	60.346	59.846	60.846	-0.21339								0	0	0	0.05455	1	6936	6936		107.01	21.847	1				91021	1685	63169	63273	101600	101600					0.056277804172850665
YPEELKPVL	9	Unmodified	_YPEELKPVL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	OPSCC_39_ClassI_Rep-2	2	544.3048095703125	2	544.305332	1086.59611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.64	1	60.426	59.926	60.926	-0.21339								0	0	0	0.05455	1	6949	6949		107.01	11.192	1				91022	1685	63169	63273	101601	101601					0.056277804172850665
YPEELKPVL	9	Unmodified	_YPEELKPVL_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	544.3049926757812	2	544.305332	1086.59611	-2.4638	-0.0013411	1.4998	0.00081636	-0.96397	-0.0005247	544.306024039265	60.183	1.5055	60.262	59.936	61.442	0.078888					71	39	3	0	0	0	0.067814	3	6850	6828;6837;6850		122.18	28.981	1	4428500			91023	1685	63169	63273	101602;101603;101604	101604					0.056277804172850665
YPEGSPEERA	10	Unmodified	_YPEGSPEERA_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	567.2794189453125	2	567.756735	1133.49892	0.17313	9.8295E-05	-2.3319	-0.001324	-2.1588	-0.0012257	567.756405193866	79.378	0.54187	79.227	78.779	79.321	-0.15051					15	12	2	0	0	0	0.03519	1	9492	9492		39.253	0	1	77843			91024	6750	63170	63274	101605	101605					-0.06249233529661069
YPERLVAK	8	Unmodified	_YPERLVAK_					0	0	0			REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	REV__DSCAM|p.R1025Efs*30|1|0.35|ENSG00000171587|chr21:40144677-40144677|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.7521667480469	2	488.284734	974.554916	-0.087807	-4.2875E-05	-3.3685	-0.0016448	-3.4563	-0.0016876	488.2829379931798	75.35	1.3663	75.105	74.043	75.409	-0.24455					62	33	3	0	0	0	0.027866	1	9226	9226		97.473	0	1	109090	+		91025	19710	63171	63275	101606	101606					0.0666206416847217
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.25323486328125	2	490.253434	978.492316	-0.081545	-3.9978E-05	-0.16138	-7.9117E-05	-0.24293	-0.00011909	490.2534446207078	42.877	1.2995	42.877	42.322	43.621	0					106	35	6	0	0	0	0.088511	5	3985	3961;3973;3985;3997;4011		114.59	32.345	1	22085000			91026	3353	63172	63276	101607;101608;101609;101610;101611	101609					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	490.25274658203125	2	490.253434	978.492316	-0.15137	-7.4208E-05	-0.070558	-3.4591E-05	-0.22192	-0.0001088	490.25348377958585	43.074	1.3333	42.935	42.312	43.645	-0.13929					100	36	5	0	0	0	0.20304	2	4017	3985;4017		88.643	26.535	1	22290000			91027	3353	63172	63276	101612;101613	101613					0.002209181002854166
YPGQPHPAL	9	Unmodified	_YPGQPHPAL_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2532043457031	2	490.253434	978.492316	0.095222	4.6683E-05	-0.33909	-0.00016624	-0.24386	-0.00011956	490.2533533819612	42.961	1.2683	42.992	42.431	43.7	0.030827					95	34	5	0	0	0	0.14199	3	3946	3934;3946;3971		101.21	40.24	1	21653000			91028	3353	63172	63276	101614;101615;101616	101615					0.002209181002854166
YPHRVAKF	8	Unmodified	_YPHRVAKF_					0	0	0		nc|ENSG00000175354|P17706-4|PTPN2;PTPN2|p.Q246Tfs*39|1|0.3|ENSG00000175354|chr18:12814325-12814326|-/T|frameshift_variant;nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;ENSG00000175354|ENST00000309660|PTPN2	nc|ENSG00000175354|P17706-4|PTPN2	nc|ENSG00000175354|P17706-4|PTPN2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	509.326171875	2	509.285069	1016.55558	-0.15015	-7.6469E-05	1.1492	0.00058526	0.99903	0.00050879	509.28548118652833	56.762	0.23276	56.595	56.482	56.714	-0.1672					7	5	2	0	0	0	0.027866	1	6157	6157		52.299	0	1	287270			91029	18532	63173	63277	101617	101617					0.04796903608178127
YPIDLFMVE	9	Unmodified	_YPIDLFMVE_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.8458862304688	2	563.778093	1125.54163	0.096957	5.4662E-05	3.5956	0.0020271	3.6926	0.0020818	563.7800554055916	62.927	0.36655	62.981	62.76	63.126	0.054104					14	8	3	0	0	0	0.021616	1	7250	7250		73.975	0	1	119510			91030	4575;18273	63174	63278	101618	101618					-0.016115547257868457
YPIDLFMVE	9	Unmodified	_YPIDLFMVE_					0	0	0		ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B	ENSG00000132141|ENST00000314144|CCT6B	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	563.778093	1125.54163	-0.72315	-0.00040769	3.2636	0.0018399	2.5404	0.0014322	564.2810744581597	63.094	0.2112	62.855	62.736	62.947	-0.23926	-0.065069	-0.00032341	NaN	73.975	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157630			91031	4575;18273	63174	63278							-0.016115547257868457
YPINLDNLI	9	Unmodified	_YPINLDNLI_					0	0	0			REV__ENST00000424690.1_1_3:174952966-174953104:-|nuORF	REV__ENST00000424690.1_1_3:174952966-174953104:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	537.7966918945312	2	537.795132	1073.57571	-0.45908	-0.00024689	3.7478	0.0020156	3.2887	0.0017687	537.7970207667825	77.615	3.0284	77.615	76.799	79.828	0					167	72	3	0	0	0	0.2508	1	9636	9636		82.241	2.5279	1	2444300	+		91032	32236	63175	63279	101619	101619					0.04186609757448423
YPIQVYDY	8	Unmodified	_YPIQVYDY_					0	0	0			REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.2947387695312	2	530.752933	1059.49131	-0.74814	-0.00039708	-0.10186	-5.4064E-05	-0.85001	-0.00045114	530.7526754485169	42.915	0.68512	42.677	42.268	42.953	-0.23737					18	11	2	0	0	0	0.027866	1	3924	3924		40.573	0	1	216900	+		91033	27323	63176	63280	101620	101620					-0.03605341059278544
YPIQVYDY	8	Unmodified	_YPIQVYDY_					0	0	0			REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.752933	1059.49131	-0.43074	-0.00022861	-0.51353	-0.00027256	-0.94426	-0.00050117	530.7524627723078	42.563	0.50389	42.563	42.355	42.859	0	-0.10984	-0.00019273	NaN	17.365	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370320	+		91034	27323	63176	63280							-0.03605341059278544
YPIQVYDY	8	Unmodified	_YPIQVYDY_					0	0	0			REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.752933	1059.49131	-0.31853	-0.00016906	-0.40808	-0.00021659	-0.72661	-0.00038565	530.7526504433107	42.761	0.46712	42.622	42.379	42.846	-0.13929	-0.051419	-8.0794E-05	NaN	17.365	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346300	+		91035	27323	63176	63280							-0.03605341059278544
YPIQVYDY	8	Unmodified	_YPIQVYDY_					0	0	0			REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.752933	1059.49131	-0.030516	-1.6196E-05	-0.020644	-1.0957E-05	-0.05116	-2.7153E-05	530.7524230578073	42.664	0.44041	42.69	42.493	42.934	0.026012	0.016767	0.00033047	NaN	17.365	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400690	+		91036	27323	63176	63280							-0.03605341059278544
YPIQVYDY	8	Unmodified	_YPIQVYDY_					0	0	0			REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	REV__SLC9A4|p.Y736Lfs*22|1|0.09|ENSG00000180251|chr2:102532497-102532498|-/TAAG|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.752933	1059.49131	-0.63984	-0.00033959	-0.35206	-0.00018686	-0.9919	-0.00052645	530.752673869932	43.04	0.43016	42.814	42.521	42.951	-0.22597	0.14036	-2.1331E-05	NaN	17.365	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231980	+		91037	27323	63176	63280							-0.03605341059278544
YPKFKYAL	8	Unmodified	_YPKFKYAL_					0	0	0		SEC11C|p.V181L|1|0.14|ENSG00000166562|chr18:59158647-59158647|G/C|missense_variant;ENST00000591406.1_1_18:56822908-56825914:+|nuORF;ENSG00000166562|ENST00000587834|SEC11C	SEC11C|p.V181L|1|0.14|ENSG00000166562|chr18:59158647-59158647|G/C|missense_variant	SEC11C|p.V181L|1|0.14|ENSG00000166562|chr18:59158647-59158647|G/C|missense_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	515.281982421875	2	515.292028	1028.5695	0.45331	0.00023358	4.1145	0.0021202	4.5678	0.0023538	515.2936689241594	65.755	0.38396	65.755	65.681	66.065	0					15	9	2	0	0	0	0.027866	1	7820	7820		28.254	0	1	174760			91038	7582	63177	63281	101621	101621					0.05636136316593365
YPKHHLQG	8	Unmodified	_YPKHHLQG_					0	0	0		ENST00000456900.1_1_1:166039982-166135561:-|nuORF	ENST00000456900.1_1_1:166039982-166135561:-|nuORF	ENST00000456900.1_1_1:166039982-166135561:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	490.2607116699219	2	490.259051	978.503549	-0.021129	-1.0359E-05	3.6452	0.0017871	3.6241	0.0017767	490.26218423081497	104.07	0.65314	104.07	103.63	104.29	0					35	15	3	0	0	0	1.0133	1	13361	13361		35.201	12.158	1	176980			91039	14602	63178	63282	101622	101622					0.013437401944202065
YPKIQRGE	8	Unmodified	_YPKIQRGE_					0	0	0			REV__ENSG00000277791|ENST00000619426|PSMB3	REV__ENSG00000277791|ENST00000619426|PSMB3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	495.28729248046875	2	495.771991	989.529429	0.67116	0.00033274	-0.86081	-0.00042677	-0.18965	-9.4024E-05	495.7714143161061	51.032	0.76769	50.851	50.647	51.415	-0.18071					46	19	3	0	0	0	0.027866	1	5277	5277		26.796	1.3459	1	1227100	+		91040	29208	63179	63283	101623	101623					0.034245896460333825
YPKRFLPP	8	Unmodified	_YPKRFLPP_					0	0	0			REV__PAQR7|p.W43R|1|0.19|ENSG00000182749|chr1:25863713-25863713|A/T|missense_variant	REV__PAQR7|p.W43R|1|0.19|ENSG00000182749|chr1:25863713-25863713|A/T|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2740173339844	2	509.297645	1016.58074	-0.42199	-0.00021492	2.9562	0.0015056	2.5342	0.0012906	509.29906059840647	75.585	0.55963	75.326	75.075	75.634	-0.25866					24	13	2	0	0	0	0.027866	1	8979	8979		46.766	2.2354	1	607830	+		91041	37347	63180	63284	101624	101624					0.07310958410744206
YPLAAPLFL	9	Unmodified	_YPLAAPLFL_					0	0	0			REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF	REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.7927551269531	2	502.794404	1003.57425	-0.19496	-9.8022E-05	-4.1964	-0.0021099	-4.3913	-0.0022079	502.79214073568073	64.23	0.83528	64.002	63.624	64.459	-0.22773					52	20	4	0	0	0	0.48384	1	7281	7281		60.404	0.10967	1	2163600	+		91042	30439	63181	63285	101625	101625					0.07261020459361589
YPLESRPSL	9	Unmodified	_YPLESRPSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8422241210938	2	531.284931	1060.55531	-0.31882	-0.00016939	-0.55995	-0.00029749	-0.87878	-0.00046688	531.2844620592692	51.39	0.62354	51.39	51.248	51.871	0					37	17	3	0	0	0	0.023835	1	5451	5451		61.691	18.827	1	2430000			91043	5130	63182	63286	101626	101626					0.027454390976799914
YPLESRPSL	9	Unmodified	_YPLESRPSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	531.284931	1060.55531	0.39086	0.00020766	2.1923	0.0011648	2.5832	0.0013724	531.2858426747873	51.583	0.8953	51.464	51.043	51.939	-0.11876	0.011579	0.0017898	NaN	61.691	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253200			91044	5130	63182	63286							0.027454390976799914
YPLESRPSL	9	Unmodified	_YPLESRPSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	531.284931	1060.55531	-1.8949	-0.0010067	4.1518	0.0022058	2.2569	0.0011991	531.2868361490857	51.82	0.74627	51.551	51.049	51.795	-0.26903	0.098735	0.0038719	NaN	61.691	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210400			91045	5130	63182	63286							0.027454390976799914
YPLESRPSL	9	Unmodified	_YPLESRPSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF;FCHSD2-NUMA1|1|fusion	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	531.284931	1060.55531	0.79091	0.0004202	1.5684	0.00083328	2.3593	0.0012535	531.2855540061562	51.714	0.80099	51.53	50.904	51.705	-0.18405	0.077837	0.0011269	NaN	61.691	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187260			91046	5130	63182	63286							0.027454390976799914
YPLHFWKP	8	Unmodified	_YPLHFWKP_					0	0	0			REV__nc|ENSG00000162894|O60667-2|FCMR	REV__nc|ENSG00000162894|O60667-2|FCMR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	544.2974853515625	2	544.28982	1086.56509	0.56925	0.00030984	4.3453	0.0023651	4.9146	0.002675	544.2921109181838	77.277	0.48966	77.034	76.873	77.362	-0.24232					21	12	2	0	0	0	0.027866	1	9182	9182		35.201	0	1	462680	+		91047	25506	63183	63287	101627	101627					0.025266718937018595
YPLHSEGLV	9	Unmodified	_YPLHSEGLV_					0	0	0		ENST00000360351.8_2_2:210595311-210595557:+|nuORF	ENST00000360351.8_2_2:210595311-210595557:+|nuORF	ENST00000360351.8_2_2:210595311-210595557:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	507.7676086425781	2	507.766374	1013.5182	0.28736	0.00014591	2.331	0.0011836	2.6184	0.0013295	507.76761062247033	58.981	1.2766	59.067	58.63	59.906	0.085682					136	34	8	0	0	0	0.64155	1	6626	6626		50.025	2.1089	1	22914000			91048	12764	63184	63288	101628	101628					0.011977675519119657
YPLKAHQKV	9	Unmodified	_YPLKAHQKV_					0	0	0		ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	542.7928466796875	2	542.319109	1082.62366	-0.45586	-0.00024722	-3.5293	-0.001914	-3.9852	-0.0021613	542.3169768933012	34.405	0.3632	34.199	34.043	34.406	-0.20696					10	8	2	0	0	0	0.024541	1	2509	2509		21.96	4.4919	1	84736			91049	7507	63185	63289	101629	101629					0.08565728468170164
YPLKAHQKV	9	Unmodified	_YPLKAHQKV_					0	0	0		ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	ENSG00000166135|ENST00000299163|HIF1AN	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	542.319109	1082.62366	-0.36066	-0.00019559	-3.7032	-0.0020083	-4.0639	-0.0022039	542.3170308858527	34.415	0.27288	34.191	34.106	34.379	-0.22412	-0.0039975	-0.00014228	NaN	20.947	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104350			91050	7507	63185	63289							0.08565728468170164
YPLKTSLLKS	10	Unmodified	_YPLKTSLLKS_					0	0	0			REV__ENSG00000198876|ENST00000361264|DCAF12	REV__ENSG00000198876|ENST00000361264|DCAF12	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	575.3455810546875	2	575.347532	1148.68051	0.52304	0.00030093	-4.1315	-0.0023771	-3.6085	-0.0020761	575.345041819919	97.055	1.816	97.055	96.66	98.476	-3.0518E-05					111	41	5	0	0	0	1.1088	1	12282	12282		31.53	0	1	4068000	+		91051	28504	63186	63290	101630	101630					0.11211731234061517
YPLLLARSL	9	Unmodified	_YPLLLARSL_					0	0	0		ENSG00000213999|ENST00000424583|MEF2B;ENST00000409224.5_1_19:19256608-19257444:-|nuORF	ENSG00000213999|ENST00000424583|MEF2B	ENSG00000213999|ENST00000424583|MEF2B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.3026123046875	2	523.32386	1044.63317	0.65986	0.00034532	2.1279	0.0011136	2.7878	0.0014589	523.323383480173	87.15	0.37587	87.014	86.718	87.094	-0.13613					13	8	2	0	0	0	0.024292	1	10575	10575		58.782	14.665	1	54966			91052	10534	63187	63291	101631	101631					0.1126349675369056
YPLLPGLRY	9	Unmodified	_YPLLPGLRY_					0	0	0		ATP1A3|p.F90Lfs*29|1|0.62|ENSG00000105409|chr19:41988026-41988027|-/C|frameshift_variant	ATP1A3|p.F90Lfs*29|1|0.62|ENSG00000105409|chr19:41988026-41988027|-/C|frameshift_variant	ATP1A3|p.F90Lfs*29|1|0.62|ENSG00000105409|chr19:41988026-41988027|-/C|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	547.3035278320312	2	546.316035	1090.61752	-0.65165	-0.00035601	-3.6477	-0.0019928	-4.2994	-0.0023488	546.313889117727	38.004	1.2944	37.825	37.128	38.422	-0.17929					51	35	3	0	0	0	0.024466	1	3006	3006		33.516	13.519	1	1002300			91053	154	63188	63292	101632	101632					0.07583210236657578
YPLLVGKYL	9	Unmodified	_YPLLVGKYL_					0	0	0			REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	REV__ENST00000541473.1_1_11:61160710-61161501:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	533.3187255859375	2	533.320786	1064.62702	0.22848	0.00012185	-2.897	-0.001545	-2.6685	-0.0014232	533.3193958870153	106.38	0.47508	106.38	106.2	106.68	0					30	14	3	0	0	0	0.36105	1	13664	13664		68.485	3.0193	1	253890	+		91054	27909	63189	63293	101633	101633					0.09728978522161924
YPLQDTTGY	9	Unmodified	_YPLQDTTGY_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	529.7713623046875	2	529.245472	1056.47639	-0.49642	-0.00026273	2.0494	0.0010846	1.553	0.00082189	529.2469479975039	65.187	0.52035	64.933	64.544	65.064	-0.25444					17	11	2	0	0	0	0.02435	1	7411	7411		42.396	5.3677	1	119770			91055	4041	63190	63294	101634	101634					-0.04958832927286494
YPLQGQPLA	9	Unmodified	_YPLQGQPLA_					0	0	0		ENST00000374632.7_1_1:23240108-23240360:+|nuORF	ENST00000374632.7_1_1:23240108-23240360:+|nuORF	ENST00000374632.7_1_1:23240108-23240360:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	493.2808837890625	2	493.768917	985.523281	-0.39551	-0.00019529	-3.3269	-0.0016427	-3.7225	-0.001838	493.76737357997007	21.382	0.58073	21.292	21.01	21.591	-0.090092					14	11	2	0	0	0	0.024487	1	665	665		31.955	0	1	29942			91056	13125	63191	63295	101635	101635					0.0299407141451411
YPLRISLL	8	Unmodified	_YPLRISLL_					0	0	0			REV__ENSG00000198889|ENST00000371126|DCAF12L1	REV__ENSG00000198889|ENST00000371126|DCAF12L1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	487.28192138671875	2	487.805303	973.596052	0.25831	0.00012601	-0.44838	-0.00021872	-0.19007	-9.2715E-05	487.80490439057263	57.364	0.87176	57.189	56.7	57.571	-0.1749					43	23	2	0	0	0	0.027866	1	6458	6458		50.025	0	1	373470	+		91057	28413	63192	63296	101636	101636					0.10819825207954636
YPLSFLLNL	9	Unmodified	_YPLSFLLNL_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.3153076171875	2	540.310418	1078.60628	-0.47747	-0.00025798	-3.3637	-0.0018174	-3.8411	-0.0020754	540.3085665142206	72.705	1.6546	72.428	72.07	73.724	-0.2769					110	39	4	0	0	0	0.11092	1	8598	8598		108.09	4.0307	1	7118500			91058	9072	63193	63297	101637	101637					0.07012388142516102
YPLSRVSTF	9	Unmodified	_YPLSRVSTF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7286376953125	2	535.287474	1068.5604	-1.1706	-0.0006266	0.98091	0.00052507	-0.18967	-0.00010153	535.2880212394556	60.446	0.40541	60.27	59.998	60.403	-0.1761					19	9	3	0	0	0	0.024381	1	6690	6690		45.952	8.7928	1	157030	+		91059	28328	63194	63298	101638	101638					0.028857429602794582
YPLYINQT	8	Unmodified	_YPLYINQT_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	506.82403564453125	2	506.260925	1010.5073	-0.57363	-0.0002904	0.53192	0.00026929	-0.041704	-2.1113E-05	506.25998153510074	81.555	0.52851	81.579	81.288	81.817	0.023911					13	12	2	0	0	0	0.027866	1	10063	10063		12.959	0.75233	1	69746			91060	3991	63195	63299	101639	101639					0.0024636517761109644
YPMFIIDA	8	Unmodified	_YPMFIIDA_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71|RTEL1	REV__nc|ENSG00000258366|Q9NZ71|RTEL1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	484.26617431640625	2	485.241147	968.46774	-0.35629	-0.00017289	-3.7911	-0.0018396	-4.1474	-0.0020125	485.2391345853991	57.181	0.65553	57.181	56.841	57.496	0					41	17	3	0	0	0	0.027866	1	6419	6419		35.201	0	1	1829300	+		91061	29096	63196	63300	101640	101640					-0.017754780974541973
YPMMRRAF	8	Unmodified	_YPMMRRAF_					0	0	0		HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;HCN1|p.Q689Sfs*91|1|0.12|ENSG00000164588|chr5:45262529-45262529|G/-|frameshift_variant;ENSG00000164588|ENST00000303230|HCN1;ENSG00000099822|ENST00000251287|HCN2;ENST00000569415.1_1_15:30516861-30517158:+|nuORF;ENST00000568218.2_1_15:32605934-32606516:-|nuORF;ENSG00000138622|ENST00000261917|HCN4	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant;ENSG00000138622|ENST00000261917|HCN4	HCN1|p.T723Pfs*57|1|0.12|ENSG00000164588|chr5:45262428-45262428|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2352905273438	2	536.264964	1070.51538	-0.39847	-0.00021368	3.6496	0.0019571	3.2511	0.0017435	536.2665250615631	67.993	1.1456	67.755	67.245	68.39	-0.23814					70	27	5	0	0	0	0.027866	1	7788	7788		46.766	24.807	1	857770			91062	7294;5256	63197	63301	101641	101641					-0.017061023782616758
YPNAKVEL	8	Unmodified	_YPNAKVEL_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.2557373046875	2	467.255643	932.496732	-0.014545	-6.7963E-06	-0.22197	-0.00010372	-0.23652	-0.00011051	467.2554061017437	47.302	0.87872	47.205	46.789	47.668	-0.096653					53	23	3	0	0	0	0.4075	1	4633	4633		96.19	5.4138	1	2105000			91063	4523	63198	63302	101642	101642					0.027783825231949777
YPNIRGHARY	10	Unmodified	_YPNIRGHARY_					0	0	0			REV__ENST00000452862.1_1_3:197577273-197577471:-|nuORF	REV__ENST00000452862.1_1_3:197577273-197577471:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.22113037109375	3	416.219506	1245.63669	-0.19188	-7.9863E-05	3.656	0.0015217	3.4642	0.0014419	416.2207044267205	24.555	2.191	24.38	23.612	25.803	-0.17484					143	51	4	0	0	0	1.0816	1	1073	1073		35.152	1.2304	1	1895600	+		91064	29135	63199	63303	101643	101643					0.023695595802792013
YPNLTCITV	9	Unmodified	_YPNLTCITV_					0	0	0			REV__nc|ENSG00000111319|P37088-3|SCNN1A	REV__nc|ENSG00000111319|P37088-3|SCNN1A	MSMS	OPSCC_39_ClassI_Rep-1	1	512.2628173828125	2	512.26261	1022.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.931	1	84.931	84.431	85.431	0								0	0	0	0.17581	1	10644	10644		76.774	7.928	1		+		91065	21908	63200	63304	101644	101644					0.00031291959965074057
YPNNKAAKTQL	11	Unmodified	_YPNNKAAKTQL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	416.5631103515625	3	416.562938	1246.66699	-0.21244	-8.8495E-05	-0.17334	-7.2206E-05	-0.38578	-0.0001607	416.56280936199704	28.4	0.85985	28.396	27.929	28.789	-0.0042019					61	20	4	0	0	0	0.9544	1	1635	1635		46.955	0.49821	1	1728200			91066	740	63201	63305	101645	101645					0.05351873454787892
YPNNKAAKTQL	11	Unmodified	_YPNNKAAKTQL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	416.5631103515625	3	416.562938	1246.66699	-0.23255	-9.6871E-05	-0.045462	-1.8938E-05	-0.27801	-0.00011581	416.56286069697944	28.107	0.93528	28.188	27.721	28.657	0.080812					71	22	5	0	0	0	0.6477	1	1555	1555		66.92	1.4548	1	1806500			91067	740	63201	63305	101646	101646					0.05351873454787892
YPNNKAAKTQL	11	Unmodified	_YPNNKAAKTQL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-1	1		3	416.562938	1246.66699	-0.33638	-0.00014012	-0.08869	-3.6945E-05	-0.42507	-0.00017707	416.56282812284195	28.469	0.85702	28.469	27.963	28.82	0	0.11792	-1.1415E-06	NaN	66.92	67	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2014700			91068	740	63201	63305							0.05351873454787892
YPNSKQLL	8	Unmodified	_YPNSKQLL_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENSG00000163608|ENST00000314400|NEPRO;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENST00000474311.1_1_3:112724385-112727343:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	481.76849365234375	2	481.768917	961.523281	-0.50316	-0.00024241	-0.49103	-0.00023656	-0.99419	-0.00047897	481.7684824231451	44.326	0.89461	44.221	43.889	44.784	-0.10468					63	23	4	0	0	0	0.27973	4	4117	4117;4128;4139;4153		120.62	27.426	1	4970200			91069	7113	63202	63306	101647;101648;101649;101650	101647					0.04098071414523474
YPNSKQLL	8	Unmodified	_YPNSKQLL_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENSG00000163608|ENST00000314400|NEPRO;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENST00000474311.1_1_3:112724385-112727343:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	481.7685546875	2	481.768917	961.523281	-0.93257	-0.00044928	-0.081816	-3.9416E-05	-1.0144	-0.0004887	481.7687374624413	44.505	1.0098	44.261	43.904	44.913	-0.2444					56	26	4	0	0	0	0.27973	4	4155	4135;4145;4155;4169		120.62	17.311	1	4568000			91070	7113	63202	63306	101651;101652;101653;101654	101653					0.04098071414523474
YPNSKQLL	8	Unmodified	_YPNSKQLL_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENSG00000163608|ENST00000314400|NEPRO;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENST00000474311.1_1_3:112724385-112727343:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	481.7696533203125	2	481.768917	961.523281	-0.79795	-0.00038443	-0.14173	-6.8281E-05	-0.93968	-0.00045271	481.7687003468187	44.497	0.88705	44.277	43.936	44.823	-0.21939					49	23	3	0	0	0	0.32162	2	4133	4133;4158		108.09	16.739	1	5009500			91071	7113	63202	63306	101655;101656	101655					0.04098071414523474
YPPAIVVYI	9	Unmodified	_YPPAIVVYI_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.S1833Vfs*16|1|0.22|ENSG00000108510|chr17:61956465-61956465|T/-|frameshift_variant;MED13|p.N1943Kfs*37|1|0.04|ENSG00000108510|chr17:61955524-61955525|-/A|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.80078125	2	517.799686	1033.58482	-0.31133	-0.00016121	-0.084203	-4.36E-05	-0.39553	-0.00020481	517.7996284133957	104.73	2.026	104.73	104.18	106.21	-0.0015945					122	64	4	0	0	0	0.48384	1	13454	13454		60.404	12.488	1	8883900			91072	2905	63203	63307	101657	101657					0.06937003113807805
YPPELVSVL	9	Unmodified	_YPPELVSVL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	508.78363037109375	2	508.786776	1015.559	-0.69234	-0.00035225	-2.9895	-0.001521	-3.6819	-0.0018733	508.7851540244666	56.708	0.56376	56.543	56.313	56.876	-0.16431					46	15	4	0	0	0	0.55828	1	6311	6311		55.504	7.8469	1	2852200	+		91073	25017	63204	63308	101658	101658					0.05184108871515036
YPPGLLVAF	9	Unmodified	_YPPGLLVAF_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	488.2427673339844	2	488.778754	975.542954	0.31805	0.00015546	-3.8398	-0.0018768	-3.5217	-0.0017213	488.77670196971843	61.818	0.64056	61.591	61.047	61.687	-0.22663					40	16	3	0	0	0	0.024389	1	7058	7058		29.842	0	1	3210700			91074	8600	63205	63309	101659	101659					0.05420447425274233
YPPPHQVF	8	Unmodified	_YPPPHQVF_					0	0	0		nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF	nc|ENSG00000076248|P13051-2|UNG	nc|ENSG00000076248|P13051-2|UNG	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	492.75048828125	2	492.750527	983.486502	-0.35852	-0.00017666	-0.11025	-5.4328E-05	-0.46877	-0.00023099	492.7503432562784	45.785	1.0773	45.688	45.326	46.403	-0.096653					74	29	4	0	0	0	0.52467	3	4382	4382;4394;4405		83.287	22.884	1	3370100			91075	1579	63206	63310	101660;101661;101662	101660					-0.005901804113932485
YPPPHQVF	8	Unmodified	_YPPPHQVF_					0	0	0		nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF	nc|ENSG00000076248|P13051-2|UNG	nc|ENSG00000076248|P13051-2|UNG	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	492.7504577636719	2	492.750527	983.486502	-0.1413	-6.9626E-05	-0.45766	-0.00022551	-0.59896	-0.00029514	492.7501537397176	45.956	1.5238	45.695	45.249	46.773	-0.26118					84	41	3	0	0	0	0.65272	3	4399	4399;4411;4429		71.378	21.353	1	3332800			91076	1579	63206	63310	101663;101664;101665	101663					-0.005901804113932485
YPPPHQVF	8	Unmodified	_YPPPHQVF_					0	0	0		nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF	nc|ENSG00000076248|P13051-2|UNG	nc|ENSG00000076248|P13051-2|UNG	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	492.7499084472656	2	492.750527	983.486502	-0.69276	-0.00034136	0.14394	7.0928E-05	-0.54882	-0.00027043	492.75051384010953	45.873	1.59	45.671	45.325	46.915	-0.20226					86	44	3	0	0	0	0.52467	3	4393	4378;4393;4411		83.287	25.476	1	2827000			91077	1579	63206	63310	101666;101667;101668	101667					-0.005901804113932485
YPPPKRESE	9	Unmodified	_YPPPKRESE_					0	0	0			REV__nc|ENSG00000109685|O96028-4|NSD2	REV__nc|ENSG00000109685|O96028-4|NSD2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	551.2638549804688	2	551.780013	1101.54547	-0.5036	-0.00027788	-0.35038	-0.00019334	-0.85399	-0.00047121	551.779784074571	45.335	1.2431	45.235	44.977	46.22	-0.099449					108	34	5	0	0	0	0.024427	1	4261	4261		34.173	0	1	10720000	+		91078	21808	63207	63311	101669	101669					-0.0012374890770843194
YPPVLQPI	8	Unmodified	_YPPVLQPI_					0	0	0		sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	sp|P03203|EBNA4_EBVB9Epstein-Barrnuclearantigen4OS=Epstein-Barrvirus(strainB95-8)OX=10377GN=EBNA4PE=1SV=3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	464.29620361328125	2	463.770929	925.527304	-1.2198	-0.00056571	0.78206	0.0003627	-0.43773	-0.00020301	463.77135603720996	65.53	0.57674	65.317	65.094	65.67	-0.21327					23	13	2	0	0	0	0.027866	1	7482	7482		25.45	0	1	465770			91079	37926	63208	63312	101670	101670					0.06156160908221864
YPQMRHRV	8	Unmodified	_YPQMRHRV_					0	0	0		ENST00000504454.5_2_4:114274782-114274872:+|nuORF	ENST00000504454.5_2_4:114274782-114274872:+|nuORF	ENST00000504454.5_2_4:114274782-114274872:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	543.7622680664062	2	543.78491	1085.55527	-1.1899	-0.00064703	-3.3753	-0.0018354	-4.5652	-0.0024825	543.7829801422414	84.359	0.63093	84.385	84.032	84.663	0.026558					39	14	4	0	0	0	0.027866	1	10440	10440		44.531	7.372	1	683820			91080	15714	63209	63313	101671	101671					0.01591160616681009
YPQNAILDL	9	Unmodified	_YPQNAILDL_					0	0	0		CON__Q0V8M9	CON__Q0V8M9	CON__Q0V8M9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	523.3265991210938	2	523.779482	1045.54441	-0.9993	-0.00052341	0.25917	0.00013575	-0.74013	-0.00038767	523.7795200385864	66.817	0.57719	66.817	66.588	67.165	0					31	13	3	0	0	0	0.024209	1	7993	7993		66.429	6.311	1	1673200		+	91081	535	63210	63314	101672	101672					0.023460367233838042
YPQNQPDKL	9	Unmodified	_YPQNQPDKL_					0	0	0			REV__ENSG00000165185|ENST00000337530|KIAA1958	REV__ENSG00000165185|ENST00000337530|KIAA1958	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.7828979492188	2	551.780013	1101.54547	-0.5036	-0.00027788	-0.35038	-0.00019334	-0.85399	-0.00047121	551.779784074571	45.335	1.2431	45.235	44.977	46.22	-0.099449					108	34	5	0	0	0	0.23085	2	4280	4280;4289		84.916	2.165	1	10720000	+		91082	25851	63211	63315	101673;101674	101673					-0.0012374890770843194
YPQRRGTV	8	Unmodified	_YPQRRGTV_					0	0	0			REV__ENSG00000049323|ENST00000404816|LTBP1	REV__ENSG00000049323|ENST00000404816|LTBP1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	488.7702941894531	2	488.769783	975.525013	-0.56905	-0.00027813	-0.47174	-0.00023057	-1.0408	-0.00050871	488.76947622522164	28.792	1.0819	28.792	28.044	29.126	-0.00063324					55	25	3	0	0	0	0.845	1	1707	1707		55.504	5.4797	1	1153000	+		91083	20145	63212	63316	101675	101675					0.03627125223147232
YPRADTGLF	9	Unmodified	_YPRADTGLF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2637939453125	2	520.263999	1038.51345	-0.72085	-0.00037503	0.2577	0.00013407	-0.46315	-0.00024096	520.2641875110473	56.296	1.7317	56.296	55.573	57.305	0					164	48	7	0	0	0	0.067814	6	6295	6238;6248;6260;6271;6283;6295		122.18	42.237	1	24514000			91084	5147	63213	63317	101676;101677;101678;101679;101680;101681	101681					-0.00427116590890364
YPRADTGLF	9	Unmodified	_YPRADTGLF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.2634887695312	2	520.263999	1038.51345	-0.64126	-0.00033362	0.062348	3.2437E-05	-0.57891	-0.00030119	520.2640912424906	56.349	1.3217	56.193	55.628	56.949	-0.15631					147	36	6	0	0	0	0.016758	6	6259	6226;6248;6259;6271;6283;6297		153.04	67.676	1	23628000			91085	5147	63213	63317	101682;101683;101684;101685;101686;101687	101684					-0.00427116590890364
YPRADTGLF	9	Unmodified	_YPRADTGLF_					0	0	0		nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	520.2640380859375	2	520.263999	1038.51345	-0.9474	-0.0004929	0.34348	0.0001787	-0.60392	-0.0003142	520.2642539538033	56.007	1.8706	56.105	55.561	57.432	0.097897					153	51	6	0	0	0	0.03849	6	6131	6131;6143;6154;6166;6178;6191		134.81	52.506	1	22881000			91086	5147	63213	63317	101688;101689;101690;101691;101692;101693	101688					-0.00427116590890364
YPRDMVICL	9	Unmodified	_YPRDMVICL_					0	0	0			REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	REV__CASD1|p.C783Lfs*12|1|0.16|ENSG00000127995|chr7:94555704-94555705|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.7870483398438	2	555.277738	1108.54092	0.23795	0.00013213	4.1714	0.0023163	4.4093	0.0024484	555.2798448898782	82.82	0.43256	82.639	82.418	82.85	-0.18079					12	9	2	0	0	0	0.024294	1	9959	9959		29.15	0	1	99009	+		91087	19248	63214	63318	101694	101694					-0.009006726465031534
YPRIHFALATY	11	Unmodified	_YPRIHFALATY_					0	0	0		TUBA3C|p.P268A|1|0.26|ENSG00000198033|chr13:19177181-19177181|G/C|missense_variant	TUBA3C|p.P268A|1|0.26|ENSG00000198033|chr13:19177181-19177181|G/C|missense_variant	TUBA3C|p.P268A|1|0.26|ENSG00000198033|chr13:19177181-19177181|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	451.24554443359375	3	451.243429	1350.70846	-0.22454	-0.00010132	3.9033	0.0017614	3.6788	0.00166	451.24518709553644	46.005	1.0401	45.744	45.383	46.423	-0.26118					97	27	5	0	0	0	0.90172	1	4384	4384		51.528	3.3398	1	11241000			91088	38119	63215	63319	101695	101695					0.04713054214130352
YPRIKPRQRSL	11	Unmodified	_YPRIKPRQRSL_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	471.9515075683594	3	471.95276	1412.83645	0.53529	0.00025263	-2.7353	-0.0012909	-2.2	-0.0010383	471.9515317321692	104.24	0.66305	104.24	103.94	104.6	0					35	15	3	0	0	0	1.0408	1	13391	13391		27.644	9.1129	1	344200			91089	5658	63216	63320	101696	101696					0.14654614528012644
YPRIKPRQRSL	11	Unmodified	_YPRIKPRQRSL_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		3	471.95276	1412.83645	0.41888	0.00019769	-2.7462	-0.0012961	-2.3273	-0.0010984	471.95157145104895	104.22	0.67291	104.22	103.87	104.55	0.0031433	-0.040278	-2.8134E-05	NaN	27.644	49	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312860			91090	5658	63216	63320							0.14654614528012644
YPRLGPPTP	9	Unmodified	_YPRLGPPTP_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.6046447753906	2	499.276909	996.539266	0.04345	2.1694E-05	3.9175	0.0019559	3.9609	0.0019776	499.278923768003	56.046	0.63242	55.829	55.525	56.157	-0.21607					25	16	2	0	0	0	0.024397	1	6078	6078		39.253	18.306	1	189520			91091	6886	63217	63321	101697	101697					0.04085777651414446
YPRLTATW	8	Unmodified	_YPRLTATW_					0	0	0			REV__nc|ENSG00000241553|P59998-3|ARPC4	REV__nc|ENSG00000241553|P59998-3|ARPC4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	504.7667236328125	2	504.269084	1006.52362	-0.18251	-9.2033E-05	-0.26814	-0.00013522	-0.45065	-0.00022725	504.2684707416624	65.701	0.49908	65.46	65.207	65.706	-0.24144					16	11	2	0	0	0	0.027866	1	7537	7537		53.351	9.7254	1	586270	+		91092	37158	63218	63322	101698	101698					0.02061491134361404
YPRMLRYY	8	Unmodified	_YPRMLRYY_					0	0	0			REV__nc|ENSG00000162006|Q96KJ4|MSLNL	REV__nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	580.7498168945312	2	581.297319	1160.58008	-0.48744	-0.00028335	1.6088	0.0009352	1.1214	0.00065186	581.2982727299038	73.772	0.32789	73.582	73.355	73.683	-0.19026					14	7	2	0	0	0	0.027866	1	8659	8659		35.201	12.621	1	271560	+		91093	25412	63219	63323	101699	101699					0.006217956994078122
YPRSHPIV	8	Unmodified	_YPRSHPIV_					0	0	0			REV__ENSG00000197540|ENST00000264553|GZMM	REV__ENSG00000197540|ENST00000264553|GZMM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	484.7673645019531	2	484.769252	967.52395	-0.87033	-0.00042191	-3.752	-0.0018188	-4.6223	-0.0022407	484.76742997080987	34.95	1.1056	35.001	34.723	35.828	0.050255					61	28	3	0	0	0	0.71833	1	2575	2575		65.803	3.6958	1	16452000	+		91094	28314	63220	63324	101700	101700					0.038889108542207396
YPRSILTSL	9	Unmodified	_YPRSILTSL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	525.3030395507812	2	525.303124	1048.5917	0.34328	0.00018032	-0.64285	-0.00033769	-0.29957	-0.00015737	525.3026926763421	63.654	1.0422	63.654	63.126	64.168	0					94	28	4	0	0	0	0.1158	1	7447	7447		107.01	13.812	1	6369600			91095	3943	63221	63325	101701	101701					0.06934315994362805
YPRSILTSL	9	Unmodified	_YPRSILTSL_					0	0	0		TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	TRIM24|p.E994*|1|0.13|ENSG00000122779|chr7:138584775-138584776|-/T|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.3030395507812	2	525.303124	1048.5917	-0.14172	-7.4444E-05	-0.31153	-0.00016365	-0.45325	-0.00023809	525.3028768859093	63.908	1.1946	63.657	63.084	64.278	-0.25141					95	32	4	0	0	0	0.2101	1	7452	7452		87.696	7.9839	1	5748100			91096	3943	63221	63325	101702	101702					0.06934315994362805
YPRTGGTL	8	Unmodified	_YPRTGGTL_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000373618.1_1_9:126520092-126692193:-|nuORF;DENND1A-NDUFA8|1|fusion;DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion	nc|ENSG00000119522|Q8TEH3-2|DENND1A;DENND1A-ENG|1|fusion	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	432.73260498046875	2	432.732335	863.450116	0.053935	2.3339E-05	0.5084	0.00022	0.56233	0.00024334	432.73239240309266	34.057	0.73793	34.052	33.753	34.491	-0.0045624					37	18	3	0	0	0	0.56592	1	2507	2507		79.451	16.473	1	1601500			91097	18210;630	63222	63326	101703	101703					0.012929426919072284
YPRTGGTL	8	Unmodified	_YPRTGGTL_					0	0	0		nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;ENST00000373618.1_1_9:126520092-126692193:-|nuORF;DENND1A-NDUFA8|1|fusion;DENND1A-ENG|1|fusion;DENND1A-ENG|2|fusion	nc|ENSG00000119522|Q8TEH3-2|DENND1A;DENND1A-ENG|1|fusion	nc|ENSG00000119522|Q8TEH3-2|DENND1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	432.732335	863.450116	-0.15334	-6.6353E-05	0.71349	0.00030875	0.56015	0.0002424	432.732525234611	34.018	0.95766	34.068	33.765	34.723	0.050255	0.0077705	9.0137E-05	NaN	79.451	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1589900			91098	18210;630	63222	63326							0.012929426919072284
YPSDSAVVTIN	11	Unmodified	_YPSDSAVVTIN_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	582.8331909179688	2	583.290411	1164.56627	-0.91492	-0.00053366	-1.8326	-0.0010689	-2.7475	-0.0016026	583.2893078047342	75.338	2.6316	75.08	74.102	76.734	-0.25866					115	63	2	0	0	0	0.024775	1	8883	8883		72.879	51.932	1	634890	+		91099	25715	63223	63327	101704	101704					-0.009432033186840272
YPSKVPTLV	9	Unmodified	_YPSKVPTLV_					0	0	0		ENST00000478269.5_1_3:50380731-50381380:-|nuORF	ENST00000478269.5_1_3:50380731-50381380:-|nuORF	ENST00000478269.5_1_3:50380731-50381380:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	502.29400634765625	2	502.294768	1002.57498	0.074906	3.7625E-05	-2.7263	-0.0013694	-2.6514	-0.0013318	502.29407969473186	53.819	1.2603	53.819	53.232	54.492	0					136	35	7	0	0	0	0.12914	1	5852	5852		104.06	0	1	17778000			91100	15139	63224	63328	101705	101705					0.07379815108424737
YPSKVPTLV	9	Unmodified	_YPSKVPTLV_					0	0	0		ENST00000478269.5_1_3:50380731-50381380:-|nuORF	ENST00000478269.5_1_3:50380731-50381380:-|nuORF	ENST00000478269.5_1_3:50380731-50381380:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.2953186035156	2	502.294768	1002.57498	-0.1847	-9.2773E-05	-0.30569	-0.00015355	-0.49038	-0.00024632	502.2945327814855	54.025	0.84458	53.78	53.421	54.265	-0.2453					92	26	5	0	0	0	0.16638	3	5687	5687;5699;5713		95.815	10.379	1	11107000			91101	15139	63224	63328	101706;101707;101708	101706					0.07379815108424737
YPSLDLQGSI	10	Unmodified	_YPSLDLQGSI_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	546.729736328125	2	546.782222	1091.54989	-0.98224	-0.00053707	-4.3461	-0.0023764	-5.3283	-0.0029134	547.2813552549903	61.184	0.57539	60.93	60.852	61.427	-0.25373					16	13	2	0	0	0	0.03519	1	6895	6895		49.442	5.3247	1	158280	+		91102	22372	63225	63329	101709	101709					0.007777155151870829
YPTEHCQYQ	9	Unmodified	_YPTEHCQYQ_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	585.2944946289062	2	584.740031	1167.46551	-0.50261	-0.00029389	-3.1522	-0.0018432	-3.6548	-0.0021371	584.7378992009918	56.719	0.42232	56.517	56.25	56.672	-0.20208					24	10	3	0	0	0	0.024374	1	6115	6115		58.782	29.632	1	445700	+		91103	20681	63226	63330	101710	101710					-0.11152558573212445
YPTLRPTAGR	10	Unmodified	_YPTLRPTAGR_					0	0	0		ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	ENSG00000166268|ENST00000552032|MYRFL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	566.7559204101562	2	566.317097	1130.61964	0.99144	0.00056147	-1.0365	-0.00058699	-0.045054	-2.5515E-05	566.316756556912	19.974	0.29331	20.04	19.921	20.215	0.066195					6	5	2	0	0	0	0.03519	1	458	458		27.882	0	1	12080			91104	7534	63227	63331	101711	101711					0.05955638974455724
YPTYNRSPM	9	Unmodified	_YPTYNRSPM_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-10|MYZAP	REV__nc|ENSG00000263155|P0CAP1-10|MYZAP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	563.8449096679688	2	564.760766	1127.50698	-0.38923	-0.00021982	-4.0184	-0.0022695	-4.4077	-0.0024893	564.7583109221629	66.265	0.4617	65.984	65.672	66.134	-0.28149					17	11	2	0	0	0	0.024319	1	7843	7843		39.253	0	1	144950	+		91105	29128	63228	63332	101712	101712					-0.0516737781390475
YPVKEKVFY	9	Unmodified	_YPVKEKVFY_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	586.2412719726562	2	586.82115	1171.62775	-1.0565	-0.00062	-3.0387	-0.0017832	-4.0953	-0.0024032	586.8190987575025	61.427	0.74017	61.17	60.848	61.588	-0.25725					26	17	2	0	0	0	0.024205	1	6912	6912		63.306	6.5852	1	215020			91106	5692	63229	63333	101713	101713					0.04879773171251145
YPVLFSGLY	9	Unmodified	_YPVLFSGLY_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|19	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|19	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7791137695312	2	529.781493	1057.54843	-0.2369	-0.0001255	-4.0134	-0.0021262	-4.2503	-0.0022517	529.7793908407918	63.612	1.728	63.385	62.769	64.497	-0.22773					116	43	4	0	0	0	0.33184	3	7220	7168;7220;7234		71.378	5.5747	1	19982000	+		91107	19469	63230	63334	101714;101715;101716	101715					0.021961262171089402
YPVLFSGLY	9	Unmodified	_YPVLFSGLY_					0	0	0			REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|19	REV__chr7:40815803-40860316|321|17.55|0.3|5.87|+|2|TE_info:L1PA16,L1PA16_dup5995,L1,LINE,donor,-,40810257,40815803|None,SUGCT|19	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7769165039062	2	529.781493	1057.54843	-0.48699	-0.000258	-3.8243	-0.002026	-4.3113	-0.002284	529.7794735641246	63.592	1.6886	63.399	62.822	64.51	-0.19243					128	42	4	0	0	0	0.88411	1	7170	7170		33.516	0	1	21021000	+		91108	19469	63230	63334	101717	101717					0.021961262171089402
YPVPVPRSL	9	Unmodified	_YPVPVPRSL_					0	0	0		ENST00000372490.3_1_9:131971546-131971918:+|nuORF	ENST00000372490.3_1_9:131971546-131971918:+|nuORF	ENST00000372490.3_1_9:131971546-131971918:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	513.32373046875	2	514.300384	1026.58622	0.42644	0.00021932	-4.3427	-0.0022334	-3.9162	-0.0020141	514.2980144922625	97.66	0.61604	97.658	97.278	97.894	-0.0020752					22	13	2	0	0	0	0.024506	1	12338	12338		30.504	5.0535	1	83689			91109	13044	63231	63335	101718	101718					0.07398637202550162
YPVRGEGHSLI	11	Unmodified	_YPVRGEGHSLI_					0	0	0		nc|ENSG00000182508|Q86WI0-2|LHFPL1;ENSG00000182508|ENST00000371968|LHFPL1	nc|ENSG00000182508|Q86WI0-2|LHFPL1	nc|ENSG00000182508|Q86WI0-2|LHFPL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	409.8863830566406	3	409.887533	1226.64077	0.21358	8.7542E-05	-3.677	-0.0015071	-3.4634	-0.0014196	409.8861102460467	34.475	1.5742	34.47	34.152	35.726	-0.0045624					112	40	5	0	0	0	0.53345	3	2558	2546;2558;2595		74.165	17.731	1	12390000			91110	9141	63232	63336	101719;101720;101721	101720					0.036516042833454776
YPVSISASL	9	Unmodified	_YPVSISASL_					0	0	0			REV__EPB41L3|p.F648I|1|0.39|ENSG00000082397|chr18:5415943-5415943|A/T|missense_variant	REV__EPB41L3|p.F648I|1|0.39|ENSG00000082397|chr18:5415943-5415943|A/T|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	468.7566223144531	2	468.755475	935.496398	0.16568	7.7663E-05	0.61145	0.00028662	0.77713	0.00036428	468.75566181559384	94.264	1.0396	94.264	93.967	95.007	0					68	24	4	0	0	0	0.85329	1	11988	11988		35.618	3.6634	1	2016900	+		91111	35997	63233	63337	101722	101722					0.026069628033155823
YPVWSGLPSLQ	11	Unmodified	_YPVWSGLPSLQ_					0	0	0		ENSG00000172179|ENST00000306482|PRL	ENSG00000172179|ENST00000306482|PRL	ENSG00000172179|ENST00000306482|PRL	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	416.2210693359375	3	416.220401	1245.63937	-0.19188	-7.9863E-05	1.5055	0.00062661	1.3136	0.00054674	416.2207044267205	24.555	2.191	24.38	23.612	25.803	-0.17484					143	51	4	0	0	0	0.98082	1	1049	1049		41.08	1.0219	1	1895600			91112	8252	63234	63338	101723	101723					0.026379701945870693
YPWHRFPVT	9	Unmodified	_YPWHRFPVT_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;LY75|p.Y1304Sfs*22|1|0.07|ENSG00000054219|chr2:159831719-159831720|-/ATGTCTATCAATACGTGAA|frameshift_variant;LY75|p.Y933Ifs*2|1|0.33|ENSG00000054219|chr2:159852287-159852288|-/T|frameshift_variant	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	401.5594177246094	3	401.541697	1201.60326	0.08432	3.3858E-05	1.0753	0.00043179	1.1597	0.00046565	401.87661362733724	35.782	0.18834	35.576	35.428	35.616	-0.20518					5	4	2	0	0	0	0.024457	1	2740	2740		22.58	0.79923	1	84426			91113	1169	63235	63339	101724	101724					0.01052557808338861
YPWNPALRPTQ	11	Unmodified	_YPWNPALRPTQ_					0	0	0		UNC13D|p.L263Wfs*65|1|0.16|ENSG00000092929|chr17:75840296-75840296|G/-|frameshift_variant	UNC13D|p.L263Wfs*65|1|0.16|ENSG00000092929|chr17:75840296-75840296|G/-|frameshift_variant	UNC13D|p.L263Wfs*65|1|0.16|ENSG00000092929|chr17:75840296-75840296|G/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	448.7508544921875	3	448.234933	1341.68297	-0.82372	-0.00036922	1.2022	0.00053887	0.37849	0.00016965	448.23535569435757	21.005	0.44633	20.792	20.525	20.971	-0.2128					19	8	3	0	0	0	0.02486	1	587	587		17.833	4.8757	1	58895			91114	38128	63236	63340	101725	101725					0.02579579691678191
YPWRCGALSP	10	Unmodified	_YPWRCGALSP_					0	0	0		nc|ENSG00000077782|P11362-21|FGFR1;ENST00000530701.1_1_8:38279448-38315045:-|nuORF;ENST00000335922.9_1_8:38297880-38325749:-|nuORF;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000470826.5_1_8:38281789-38325791:-|nuORF	nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-21|FGFR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	575.2761840820312	2	575.279126	1148.5437	-0.26311	-0.00015136	-3.84	-0.0022091	-4.1031	-0.0023604	575.2767516548031	95.01	0.47632	94.873	94.723	95.199	-0.13689					24	10	3	0	0	0	1.0781	1	11717	11717		35.618	2.1027	1	302920			91115	18087	63237	63341	101726	101726					-0.024630811973111122
YPWRCGALSP	10	Unmodified	_YPWRCGALSP_					0	0	0		nc|ENSG00000077782|P11362-21|FGFR1;ENST00000530701.1_1_8:38279448-38315045:-|nuORF;ENST00000335922.9_1_8:38297880-38325749:-|nuORF;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000470826.5_1_8:38281789-38325791:-|nuORF	nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-21|FGFR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	575.279126	1148.5437	0.26438	0.0001521	-4.5105	-0.0025948	-4.2461	-0.0024427	575.7781985968676	95.063	0.43344	94.94	94.77	95.203	-0.12251	0.010189	-0.00064942	NaN	35.618	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53664			91116	18087	63237	63341							-0.024630811973111122
YPWRCGALSP	10	Unmodified	_YPWRCGALSP_					0	0	0		nc|ENSG00000077782|P11362-21|FGFR1;ENST00000530701.1_1_8:38279448-38315045:-|nuORF;ENST00000335922.9_1_8:38297880-38325749:-|nuORF;ENST00000496296.5_1_8:38281789-38325791:-|nuORF;ENST00000470826.5_1_8:38281789-38325791:-|nuORF	nc|ENSG00000077782|P11362-21|FGFR1	nc|ENSG00000077782|P11362-21|FGFR1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	575.279126	1148.5437	-0.43676	-0.00025126	-3.7187	-0.0021393	-4.1555	-0.0023905	575.27617653874	95.129	0.60709	94.977	94.71	95.317	-0.15186	0.046793	0.00026157	NaN	35.618	18	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75031			91117	18087	63237	63341							-0.024630811973111122
YPYLAWLAF	9	Unmodified	_YPYLAWLAF_					0	0	0		ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	ENSG00000100300|ENST00000337554|TSPO	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	572.2647705078125	2	572.29731	1142.58007	0.39778	0.00022765	-0.067856	-3.8834E-05	0.32992	0.00018881	572.2973512361718	76.918	0.55165	76.65	76.296	76.848	-0.26807					20	12	2	0	0	0	0.024475	1	9131	9131		14.664	0	1	86571			91118	2173	63238	63342	101727	101727					0.014481189710295439
YQDLLQLQY	9	Unmodified	_YQDLLQLQY_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	592.3031616210938	2	592.303321	1182.59209	-0.47116	-0.00027907	0.51516	0.00030513	0.043998	2.606E-05	592.3035817985389	80.867	0.8928	80.629	80.328	81.221	-0.23784					60	21	4	0	0	0	0.013065	3	9703	9691;9703;9716		171.53	64.524	1	2683500			91119	5429;9286	63239	63343	101728;101729;101730	101729					0.008096909235973726
YQDLLQLQY	9	Unmodified	_YQDLLQLQY_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	592.3029174804688	2	592.303321	1182.59209	-0.44418	-0.00026309	0.27246	0.00016138	-0.17173	-0.00010171	592.303420876833	80.87	0.94095	80.664	80.3	81.241	-0.20632					68	22	4	0	0	0	0.013293	4	9713	9701;9713;9725;9738		176.09	57.344	1	2726200			91120	5429;9286	63239	63343	101731;101732;101733;101734	101732					0.008096909235973726
YQDLLQLQY	9	Unmodified	_YQDLLQLQY_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	592.3032836914062	2	592.303321	1182.59209	-0.67687	-0.00040091	0.51036	0.00030229	-0.1665	-9.862E-05	592.3035688733108	80.851	1.0283	80.705	80.284	81.312	-0.146					70	23	4	0	0	0	0.020687	3	9680	9680;9692;9705		148.99	41.84	1	2618300			91121	5429;9286	63239	63343	101735;101736;101737	101735					0.008096909235973726
YQDPHSTAV	9	Unmodified	_YQDPHSTAV_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	509.2357177734375	2	509.235439	1016.45632	-0.90099	-0.00045882	0.6296	0.00032062	-0.27139	-0.0001382	509.23569942615785	31.364	0.94838	31.364	30.961	31.91	0					55	22	3	0	0	0	0.16638	1	2090	2090		95.815	34.843	1	2494200			91122	5898	63240	63344	101738	101738					-0.05124583867245747
YQDPHSTAV	9	Unmodified	_YQDPHSTAV_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	509.23541259765625	2	509.235439	1016.45632	-0.37175	-0.00018931	0.438	0.00022304	0.066247	3.3735E-05	509.23546106908003	31.253	1.5593	31.265	30.584	32.144	0.011797					106	37	5	0	0	0	0.14024	2	2059	2059;2075		101.6	35.798	1	2581800			91123	5898	63240	63344	101739;101740	101739					-0.05124583867245747
YQDPHSTAV	9	Unmodified	_YQDPHSTAV_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.2353210449219	2	509.235439	1016.45632	-0.45292	-0.00023064	0.25226	0.00012846	-0.20066	-0.00010218	509.2353002435434	30.909	2.0939	30.984	29.962	32.056	0.074316					123	50	5	0	0	0	0.19099	2	1974	1974;1987		90.37	29.885	1	2472400			91124	5898	63240	63344	101741;101742	101741					-0.05124583867245747
YQDPHSTAV	9	Unmodified	_YQDPHSTAV_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	509.235439	1016.45632	-0.18847	-9.5976E-05	-0.14961	-7.6189E-05	-0.33809	-0.00017217	509.2352645496182	31.483	0.65065	31.242	30.915	31.565	-0.24109	0.025183	-0.0004216	NaN	101.6	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	884300			91125	5898	63240	63344							-0.05124583867245747
YQDPHSTAV	9	Unmodified	_YQDPHSTAV_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	509.235439	1016.45632	-0.44389	-0.00022605	-0.030183	-1.537E-05	-0.47408	-0.00024142	509.2353425955021	31.402	0.78048	31.217	30.824	31.604	-0.18503	0.00074786	-0.00029996	NaN	101.6	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	796480			91126	5898	63240	63344							-0.05124583867245747
YQDPHSTAV	9	Unmodified	_YQDPHSTAV_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	509.235439	1016.45632	-0.46872	-0.00023869	0.016717	8.5129E-06	-0.452	-0.00023018	509.2353812027565	31.38	0.60553	31.228	30.928	31.534	-0.15231	0.011286	-0.00025219	NaN	101.6	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	849730			91127	5898	63240	63344							-0.05124583867245747
YQDPSVLYI	9	Unmodified	_YQDPSVLYI_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.2791137695312	2	549.279315	1096.54408	-0.31741	-0.00017435	-0.42802	-0.0002351	-0.74543	-0.00040945	549.2790710565912	77.724	0.85916	77.724	77.382	78.242	0					42	20	3	0	0	0	0.42604	1	9600	9600		64.207	0	1	2153700			91128	1242	63241	63345	101743	101743					-0.00033382996502950846
YQDPSVLYI	9	Unmodified	_YQDPSVLYI_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.2794799804688	2	549.279315	1096.54408	0.098956	5.4355E-05	-0.68624	-0.00037694	-0.58728	-0.00032258	549.2789061279226	77.852	0.74054	77.641	77.376	78.117	-0.21087					36	16	3	0	0	0	0.2508	1	9600	9600		82.241	0	1	1939000			91129	1242	63241	63345	101744	101744					-0.00033382996502950846
YQDPSVLYI	9	Unmodified	_YQDPSVLYI_					0	0	0		nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF	nc|ENSG00000061273|Q8WUI4-3|HDAC7	nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.2794799804688	2	549.279315	1096.54408	-0.81044	-0.00044516	-0.38994	-0.00021419	-1.2004	-0.00065934	549.2794257064895	77.736	1.0739	77.752	77.406	78.48	0.015907					63	25	5	0	0	0	0.23085	2	9536	9524;9536		84.916	10.941	1	2357300			91130	1242	63241	63345	101745;101746	101746					-0.00033382996502950846
YQFGEIRTI	9	Unmodified	_YQFGEIRTI_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	563.7980346679688	2	563.798206	1125.58186	-1.2418	-0.00070011	0.44487	0.00025082	-0.79689	-0.00044929	563.7982411347457	62.473	0.60291	62.473	62.335	62.938	0					33	15	3	0	0	0	0.10482	1	7272	7272		109.44	35.184	1	1685300			91131	1819	63242	63346	101747	101747					0.024091279889944417
YQFGEIRTI	9	Unmodified	_YQFGEIRTI_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.7952270507812	2	563.798206	1125.58186	-1.5332	-0.00086443	0.31573	0.00017801	-1.2175	-0.00068642	563.7982053093662	62.709	0.56972	62.469	62.293	62.863	-0.23926					26	15	2	0	0	0	0.14087	1	7269	7269		101.46	33.966	1	1035100			91132	1819	63242	63346	101748	101748					0.024091279889944417
YQFGEIRTI	9	Unmodified	_YQFGEIRTI_					0	0	0		nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF	nc|ENSG00000086589|Q9NW64-2|RBM22	nc|ENSG00000086589|Q9NW64-2|RBM22	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	563.798206	1125.58186	-1.0272	-0.00057911	0.33784	0.00019047	-0.68931	-0.00038863	563.7981768221242	62.41	0.63874	62.473	62.301	62.94	0.062767	0.000979	-3.72E-05	NaN	109.44	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1442000			91133	1819	63242	63346							0.024091279889944417
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;NDUFS2|p.D243H|1|0.15|ENSG00000158864|chr1:161210135-161210135|G/C|missense_variant;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	567.2858276367188	2	567.284931	1132.55531	-0.67701	-0.00038406	0.10032	5.6909E-05	-0.5767	-0.00032715	567.2848580901859	63.087	0.73748	62.848	62.575	63.312	-0.23926					48	18	4	0	0	0	0.14181	1	7328	7328		101.25	32.466	1	2535000			91134	6709	63243	63347	101749	101749					-0.005665609023253637
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;NDUFS2|p.D243H|1|0.15|ENSG00000158864|chr1:161210135-161210135|G/C|missense_variant;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.285888671875	2	567.284931	1132.55531	-0.24879	-0.00014113	-0.18685	-0.000106	-0.43564	-0.00024713	567.2847218350125	62.862	0.84015	62.916	62.679	63.519	0.054104					53	21	4	0	0	0	0.079716	1	7243	7243		117.81	30.057	1	2127600			91135	6709	63243	63347	101750	101750					-0.005665609023253637
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;NDUFS2|p.D243H|1|0.15|ENSG00000158864|chr1:161210135-161210135|G/C|missense_variant;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	567.284931	1132.55531	-1.2559	-0.00071247	0.57701	0.00032733	-0.67892	-0.00038514	567.285170380588	62.917	0.87074	62.917	62.651	63.522	0	0.0087142	0.00042341	NaN	117.81	47	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2368800			91136	6709	63243	63347							-0.005665609023253637
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;NDUFS2|p.D243H|1|0.15|ENSG00000158864|chr1:161210135-161210135|G/C|missense_variant;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	567.284931	1132.55531	0.058643	3.3267E-05	-0.43724	-0.00024804	-0.3786	-0.00021477	567.2846746021479	63.114	0.49003	62.893	62.691	63.181	-0.22097	-0.015497	-0.00072733	NaN	117.81	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496030			91137	6709	63243	63347							-0.005665609023253637
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;NDUFS2|p.D243H|1|0.15|ENSG00000158864|chr1:161210135-161210135|G/C|missense_variant;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	567.284931	1132.55531	-0.26665	-0.00015127	-0.44096	-0.00025015	-0.70761	-0.00040142	567.2847013765917	63.04	0.3667	62.856	62.671	63.037	-0.18386	-0.051989	-0.00073155	NaN	117.81	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539450			91138	6709	63243	63347							-0.005665609023253637
YQFSKNFSL	9	Unmodified	_YQFSKNFSL_					0	0	0		ENST00000478866.5_1_1:161172175-161179984:+|nuORF;nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;NDUFS2|p.D243H|1|0.15|ENSG00000158864|chr1:161210135-161210135|G/C|missense_variant;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	ENST00000478866.5_1_1:161172175-161179984:+|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	567.284931	1132.55531	0.15133	8.5845E-05	-0.57256	-0.00032481	-0.42123	-0.00023896	567.2845630614593	63.278	0.52585	63.02	62.75	63.276	-0.25824	0.11149	-0.00088086	NaN	117.81	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516900			91139	6709	63243	63347							-0.005665609023253637
YQGRPTLL	8	Unmodified	_YQGRPTLL_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.2706604003906	2	474.269084	946.523616	5.5732	0.0026432	-1.9069	-0.00090437	3.6663	0.0017388	474.2680180216086	17.563	0.47274	17.623	17.48	17.952	0.06036					25	12	3	0	0	0	1.0239	1	156	156		33.516	3.0119	1	177140		+	91140	484	63244	63348	101751	101751					0.048214911343848144
YQIEKYRA	8	Unmodified	_YQIEKYRA_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	536.2590942382812	2	535.785099	1069.55564	-0.84374	-0.00045207	0.95295	0.00051058	0.10921	5.8513E-05	535.7855467932421	53.744	0.52248	53.547	53.275	53.798	-0.19739					43	15	4	0	0	0	0.027866	1	5603	5603		42.396	16.822	1	1815800			91141	5537	63245	63349	101752	101752					0.0236485881750923
YQIRLKEL	8	Unmodified	_YQIRLKEL_					0	0	0			REV__ENST00000470800.1_1_21:30518012-30547210:+|nuORF	REV__ENST00000470800.1_1_21:30518012-30547210:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	531.8175048828125	2	531.818941	1061.62333	-0.26414	-0.00014048	-3.8231	-0.0020332	-4.0873	-0.0021737	531.8167969886526	87.151	2.8454	87.151	86.257	89.102	0					244	67	5	0	0	0	0.6536	1	11159	11159		71.296	1.6681	1	3741200	+		91142	25065	63246	63350	101753	101753					0.09498308748334239
YQIRLKEL	8	Unmodified	_YQIRLKEL_					0	0	0			REV__ENST00000470800.1_1_21:30518012-30547210:+|nuORF	REV__ENST00000470800.1_1_21:30518012-30547210:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	531.8153076171875	2	531.818941	1061.62333	-0.018497	-9.8373E-06	-4.1634	-0.0022142	-4.1819	-0.002224	531.816561918077	87.204	3.5605	87.169	86.216	89.776	-0.035355					259	84	4	0	0	0	0.38451	1	11131	11131		99.375	6.2317	1	3781500	+		91143	25065	63246	63350	101754	101754					0.09498308748334239
YQKGSHTLIA	10	Unmodified	_YQKGSHTLIA_					0	0	0			REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.7791748046875	2	559.303655	1116.59276	-0.79754	-0.00044606	0.07118	3.9811E-05	-0.72636	-0.00040625	559.3035538553606	60.566	0.60715	60.312	60.053	60.66	-0.25373					32	14	3	0	0	0	0.03519	1	6705	6705		52.937	10.072	1	446320	+		91144	22217	63247	63351	101755	101755					0.03912530363299993
YQKQLAKVS	9	Unmodified	_YQKQLAKVS_					0	0	0			REV__ENST00000578036.5_1_17:62801160-62825332:-|nuORF	REV__ENST00000578036.5_1_17:62801160-62825332:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.2548217773438	2	532.808574	1063.60259	-0.63468	-0.00033816	-0.86344	-0.00046005	-1.4981	-0.00079821	532.8078780455664	40.683	0.323	40.458	40.296	40.619	-0.225					12	8	2	0	0	0	0.024319	1	3546	3546		56.721	5.3856	1	220530	+		91145	28863	63248	63352	101756	101756					0.07333718368636255
YQKSTELLI	9	Unmodified	_YQKSTELLI_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	547.8092651367188	2	547.808239	1093.60193	-0.61101	-0.00033472	-0.62609	-0.00034298	-1.2371	-0.0006777	547.8076606215498	54.078	1.4579	54.078	53.691	55.149	0					127	41	7	0	0	0	0.34489	3	5913	5876;5888;5913		69.628	14.851	1	14381000			91146	7790	63249	63353	101757;101758;101759	101759					0.058868789289590495
YQKSTELLI	9	Unmodified	_YQKSTELLI_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	547.808837890625	2	547.808239	1093.60193	-0.50558	-0.00027696	-0.94449	-0.0005174	-1.4501	-0.00079436	547.8074687853066	54.157	1.657	54.01	53.346	55.003	-0.14723					132	46	6	0	0	0	0.30449	4	5899	5864;5875;5887;5899		75.043	18.322	1	15906000			91147	7790	63249	63353	101760;101761;101762;101763	101763					0.058868789289590495
YQKSTELLI	9	Unmodified	_YQKSTELLI_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	547.8089599609375	2	547.808239	1093.60193	-0.53825	-0.00029486	-0.4901	-0.00026848	-1.0284	-0.00056334	547.8077617899485	53.886	1.5047	53.984	53.303	54.807	0.098015					127	42	6	0	0	0	0.14024	3	5797	5785;5797;5809		101.6	35.171	1	15141000			91148	7790	63249	63353	101764;101765;101766	101765					0.058868789289590495
YQKVAERRY	9	Unmodified	_YQKVAERRY_					0	0	0			REV__nc|ENSG00000170525|Q16875-3|PFKFB3	REV__nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.88763427734375	3	404.887645	1211.64111	0.2354	9.5309E-05	-0.28963	-0.00011727	-0.054238	-2.196E-05	404.8875355870569	22.716	0.68801	22.531	22.281	22.969	-0.18539					38	14	4	0	0	0	0.86013	1	838	838		35.152	3.6222	1	1566200	+		91149	26483	63250	63354	101767	101767					0.043750240031840804
YQLAVTKV	8	Unmodified	_YQLAVTKV_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;chr22:45345569-45353978|138|19.05|0.54|5.15|-|ENST00000404354|SMC1B,SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	461.2737731933594	2	461.273835	920.533118	-0.39975	-0.00018439	0.41622	0.00019199	0.016477	7.6005E-06	461.2738924986777	48.58	0.86517	48.58	48.311	49.176	0					71	24	4	0	0	0	0.17959	2	4965	4953;4965		143.89	0	1	6612400			91150	386	63251	63355	101768;101769	101769					0.06967259419900529
YQLAVTKV	8	Unmodified	_YQLAVTKV_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;chr22:45345569-45353978|138|19.05|0.54|5.15|-|ENST00000404354|SMC1B,SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	461.2737731933594	2	461.273835	920.533118	-0.36032	-0.0001662	0.38175	0.00017609	0.021434	9.887E-06	461.2739087276774	48.746	0.78123	48.593	48.295	49.076	-0.15277					57	21	4	0	0	0	0.11183	3	4977	4953;4964;4977		157.33	0	1	6235000			91151	386	63251	63355	101770;101771;101772	101772					0.06967259419900529
YQLAVTKV	8	Unmodified	_YQLAVTKV_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;chr22:45345569-45353978|138|19.05|0.54|5.15|-|ENST00000404354|SMC1B,SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	461.2740173339844	2	461.273835	920.533118	0.20106	9.2745E-05	-0.38885	-0.00017937	-0.18779	-8.6623E-05	461.27357618976015	48.436	1.1173	48.503	48.191	49.308	0.066795					74	30	4	0	0	0	0.25561	3	4889	4867;4877;4889		131.03	0	1	7338700			91152	386	63251	63355	101773;101774;101775	101775					0.06967259419900529
YQLDVPLGL	9	Unmodified	_YQLDVPLGL_					0	0	0			REV__ENST00000534255.1_1_8:145193835-145194452:+|nuORF	REV__ENST00000534255.1_1_8:145193835-145194452:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	509.283935546875	2	509.2844	1016.55425	-0.33127	-0.00016871	0.3038	0.00015472	-0.027472	-1.3991E-05	509.2844641515761	70.07	0.79088	69.803	69.368	70.159	-0.26725					68	18	5	0	0	0	0.27161	1	8129	8129		79.451	8.1553	1	2629000	+		91153	34631	63252	63356	101776	101776					0.04663224728756177
YQLELKDD	8	Unmodified	_YQLELKDD_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.26690673828125	2	512.253297	1022.49204	-0.85125	-0.00043605	1.0624	0.00054421	0.21115	0.00010816	512.2550841097546	82.075	0.47487	81.935	81.785	82.26	-0.14014					12	10	2	0	0	0	0.027866	1	9854	9854		63.306	2.3343	1	35538			91154	1096	63253	63357	101777	101777					-0.01830546410246825
YQLELPTYI	9	Unmodified	_YQLELPTYI_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	570.3016357421875	2	570.30279	1138.59103	-0.40578	-0.00023142	0.22026	0.00012562	-0.18552	-0.0001058	570.3028219724029	99.245	1.2675	99.245	98.562	99.829	0					99	28	5	0	0	0	0.75397	1	12652	12652		42.396	2.338	1	3152700	+		91155	22058	63254	63358	101778	101778					0.02727476554673558
YQLELPTYI	9	Unmodified	_YQLELPTYI_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	570.302734375	2	570.30279	1138.59103	1.076	0.00061362	-0.89098	-0.00050813	0.18498	0.0001055	570.3021865779501	99.167	1.6231	99.043	98.24	99.863	-0.12458					118	41	4	0	0	0	0.39228	1	12340	12340		66.429	13.078	1	1439600	+		91156	22058	63254	63358	101779	101779					0.02727476554673558
YQLKRERYRRE	11	Unmodified	_YQLKRERYRRE_					0	0	0			REV__ENSG00000126870|ENST00000407559|DYNC2I1	REV__ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.7616577148438	3	532.962095	1595.86446	-0.97206	-0.00051807	0.94484	0.00050356	-0.027222	-1.4508E-05	532.9623148015423	28.626	0.64095	28.457	28.213	28.854	-0.16897					40	14	4	0	0	0	0.024896	1	1731	1731		6.3209	0.31984	1	286130	+		91157	22910	63255	63359	101780	101780					0.09035892717429306
YQLPEILRT	9	Unmodified	_YQLPEILRT_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	566.8211059570312	2	566.821681	1131.62881	-0.29364	-0.00016644	-0.47149	-0.00026725	-0.76513	-0.00043369	566.8213404852942	67.924	1.2338	67.924	67.367	68.6	0					87	31	5	0	0	0	0.065733	2	8129	8118;8129		122.94	26.749	1	4332200			91158	8515	63256	63360	101781;101782	101782					0.06825987540128153
YQLPEILRT	9	Unmodified	_YQLPEILRT_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	566.8214111328125	2	566.821681	1131.62881	-0.036008	-2.041E-05	-0.64102	-0.00036334	-0.67703	-0.00038375	566.8212726873761	68.277	1.2885	67.984	67.425	68.714	-0.29267					80	32	4	0	0	0	0.080494	4	8145	8132;8145;8155;8166		117.53	19.155	1	3991300			91159	8515	63256	63360	101783;101784;101785;101786	101784					0.06825987540128153
YQLPEILRT	9	Unmodified	_YQLPEILRT_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	566.8211059570312	2	566.821681	1131.62881	-0.46542	-0.00026381	-0.21175	-0.00012002	-0.67717	-0.00038383	566.8214907382733	68.025	1.3417	68.044	67.384	68.726	0.018913					86	34	5	0	0	0	0.039517	3	8072	8049;8059;8072		133.99	34.618	1	4185800			91160	8515	63256	63360	101787;101788;101789	101789					0.06825987540128153
YQSNIIIKY	9	Unmodified	_YQSNIIIKY_					0	0	0		nc|ENSG00000118733|Q96PB7-5|OLFM3;ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3	nc|ENSG00000118733|Q96PB7-5|OLFM3	nc|ENSG00000118733|Q96PB7-5|OLFM3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	572.2637329101562	2	571.316232	1140.61791	0.020079	1.1471E-05	0.78018	0.00044573	0.80026	0.0004572	571.3152218456574	76.094	0.96146	75.925	75.816	76.777	-0.16854					32	22	2	0	0	0	0.024447	1	9114	9114		32.812	8.2932	1	300000			91161	3702	63257	63361	101790	101790					0.053225851658453394
YQTDGLKGFY	10	Unmodified	_YQTDGLKGFY_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	596.2874755859375	2	596.287671	1190.56079	0.0265	1.5802E-05	-0.13605	-8.1125E-05	-0.10955	-6.5323E-05	596.2874013398482	56.745	0.91511	56.52	56.189	57.104	-0.2248					72	23	5	0	0	0	0.60198	1	6162	6162		76.774	4.5309	1	4050300			91162	3343	63258	63362	101791	101791					-0.026868821105153984
YQVGQLYSV	9	Unmodified	_YQVGQLYSV_					0	0	0		ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000174238|ENST00000313486|PITPNA;PITPNA|p.N32Mfs*13|1|0.24|ENSG00000174238|chr17:1553106-1553106|T/-|frameshift_variant	ENSG00000180957|ENST00000335272|PITPNB	ENSG00000180957|ENST00000335272|PITPNB	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.766845703125	2	528.771657	1055.52876	-0.38169	-0.00020183	-1.484	-0.0007847	-1.8657	-0.00098652	528.7715125018632	67.748	1.1122	67.748	67.408	68.52	0					81	28	4	0	0	0	0.2508	1	8101	8101		82.241	13.756	1	4658700			91163	9012	63259	63363	101792	101792					0.00321750206330762
YQYPFVLGL	9	Unmodified	_YQYPFVLGL_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	550.2943115234375	2	550.294768	1098.57498	-0.529	-0.00029111	0.41898	0.00023056	-0.11002	-6.0543E-05	550.2948271222366	96.093	1.1006	96.093	95.691	96.792	0					77	25	4	0	0	0	0.14199	5	12262	12226;12237;12250;12262;12276		101.21	37.905	1	2674200			91164	7033	63260	63364	101793;101794;101795;101796;101797	101796					0.029638151084100173
YQYPFVLGL	9	Unmodified	_YQYPFVLGL_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	550.2952270507812	2	550.294768	1098.57498	0.05459	3.0041E-05	-0.1723	-9.4814E-05	-0.11771	-6.4774E-05	550.2945059419765	95.963	1.1871	95.969	95.561	96.748	0.0065079					81	27	4	0	0	0	0.29104	4	12175	12175;12186;12198;12210		76.847	22.07	1	3093000			91165	7033	63260	63364	101798;101799;101800;101801	101798					0.029638151084100173
YQYPFVLGL	9	Unmodified	_YQYPFVLGL_					0	0	0		ENSG00000163082|ENST00000321276|SGPP2;nc|ENSG00000163082|Q8IWX5-2|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	ENSG00000163082|ENST00000321276|SGPP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	550.2949829101562	2	550.294768	1098.57498	0.44977	0.00024751	-0.53696	-0.00029548	-0.087185	-4.7978E-05	550.2942993602397	96.051	1.3188	96.054	95.653	96.972	0.0020676					84	30	4	0	0	0	0.088511	3	12162	12152;12162;12174		114.59	44.958	1	2801800			91166	7033	63260	63364	101802;101803;101804	101803					0.029638151084100173
YQYQSLKTP	9	Unmodified	_YQYQSLKTP_					0	0	0			REV__HIPK3|p.P1213Q|1|0.45|ENSG00000110422|chr11:33353558-33353558|C/A|missense_variant	REV__HIPK3|p.P1213Q|1|0.45|ENSG00000110422|chr11:33353558-33353558|C/A|missense_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	565.2803344726562	2	564.290214	1126.56587	-0.17758	-0.00010021	-0.2277	-0.00012849	-0.40528	-0.0002287	564.2897470031749	47.29	0.51551	47.193	46.971	47.486	-0.096649					13	13	2	0	0	0	0.024025	1	4590	4590		52.937	25.054	1	77766	+		91167	36130	63261	63365	101805	101805					0.007654217520894235
YRAIECYLV	9	Unmodified	_YRAIECYLV_					0	0	0			REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	565.2888793945312	2	565.289159	1128.56377	0.40264	0.00022761	-0.32861	-0.00018576	0.074026	4.1846E-05	565.2888855638529	72.328	1.0516	72.063	71.758	72.81	-0.26479					52	24	3	0	0	0	0.75397	1	8486	8486		42.396	0.96952	1	1324900	+		91168	30603	63262	63366	101806	101806					0.004626697426147075
YRAIECYLV	9	Unmodified	_YRAIECYLV_					0	0	0			REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	565.289159	1128.56377	0.0010594	5.9887E-07	0.22357	0.00012638	0.22462	0.00012698	565.2889918446632	72.043	0.6954	72.043	71.718	72.414	0	-0.0063723	0.00012826	NaN	42.396	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1460000	+		91169	30603	63262	63366							0.004626697426147075
YRAIECYLV	9	Unmodified	_YRAIECYLV_					0	0	0			REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	565.289159	1128.56377	-0.079873	-4.5152E-05	0.35141	0.00019865	0.27153	0.0001535	565.2889023556335	72.095	0.72678	72.105	71.802	72.529	0.0097733	0.05508	0.0002728	NaN	42.396	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1720100	+		91170	30603	63262	63366							0.004626697426147075
YRAIECYLV	9	Unmodified	_YRAIECYLV_					0	0	0			REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	565.289159	1128.56377	0.024903	1.4078E-05	0.34991	0.0001978	0.37481	0.00021188	565.2892738912174	72.319	1.0543	72.042	71.745	72.799	-0.2769	-0.0074726	0.0002711	NaN	42.396	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1218200	+		91171	30603	63262	63366							0.004626697426147075
YRAIECYLV	9	Unmodified	_YRAIECYLV_					0	0	0			REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	565.289159	1128.56377	0.40264	0.00022761	-0.32861	-0.00018576	0.074026	4.1846E-05	565.2888855638529	72.328	1.0516	72.063	71.758	72.81	-0.26479	0.013709	-0.00049602	NaN	42.396	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1324900	+		91172	30603	63262	63366							0.004626697426147075
YRAIECYLV	9	Unmodified	_YRAIECYLV_					0	0	0			REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	REV__ENST00000339438.10_1_1:115292566-115292629:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	565.289159	1128.56377	-0.33617	-0.00019003	0.55116	0.00031156	0.21499	0.00012153	565.2893660557553	72.142	0.78644	71.943	71.626	72.412	-0.1981	-0.10617	0.00049863	NaN	42.396	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1372100	+		91173	30603	63262	63366							0.004626697426147075
YRAVQFDF	8	Unmodified	_YRAVQFDF_					0	0	0		ENST00000524717.5_1_11:95711383-95711476:-|nuORF	ENST00000524717.5_1_11:95711383-95711476:-|nuORF	ENST00000524717.5_1_11:95711383-95711476:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	523.2568359375	2	523.258717	1044.50288	-0.52983	-0.00027724	-2.5131	-0.001315	-3.0429	-0.0015922	523.2573682011821	22.883	1.5005	22.822	21.807	23.308	-0.06086					102	32	5	0	0	0	0.96719	1	848	848		42.474	1.9018	1	2616500			91174	16068	63263	63367	101807	101807					-0.017590992453051513
YRDFAMMSLL	10	Unmodified	_YRDFAMMSLL_					0	0	0			REV__ENSG00000278889|ENST00000341959|OR2S2;REV__nc|ENSG00000243641|P0DN81|OR13C7	REV__ENSG00000278889|ENST00000341959|OR2S2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	416.2389221191406	3	416.203477	1245.5886	-0.41007	-0.00017067	2.4993	0.0010402	2.0892	0.00086955	416.2050020886328	41.825	0.82065	41.593	41.117	41.937	-0.23186					27	21	2	0	0	0	0.03519	1	3748	3748		37.508	12.989	1	106120	+		91175	29224;37162	63264	63368	101808	101808					-0.02437018446289585
YRDLAIATL	9	Unmodified	_YRDLAIATL_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2974243164062	2	518.295299	1034.57605	-0.17628	-9.1363E-05	3.6713	0.0019028	3.495	0.0018114	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.26966	1	13094	13094		79.713	5.7379	1	66134000	+		91176	22638	63265	63369	101809	101809					0.06014029477319127
YRDWNSVIK	9	Unmodified	_YRDWNSVIK_					0	0	0			REV__ENSG00000169857|ENST00000306730|AVEN	REV__ENSG00000169857|ENST00000306730|AVEN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	590.809814453125	2	590.809105	1179.60366	-0.16894	-9.9814E-05	-0.11984	-7.0805E-05	-0.28879	-0.00017062	590.808999546907	59.322	1.7232	59.073	58.576	60.3	-0.24842					96	43	4	0	0	0	0.32811	1	6551	6551		71.877	3.0906	1	9601600	+		91177	26405	63266	63370	101810	101810					0.021039327375319772
YRDYDRNRRER	11	Unmodified	_YRDYDRNRRER_					0	0	0		SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	SRRT|p.L616Cfs*59|1|0.23|ENSG00000087087|chr7:100887070-100887070|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.293212890625	3	533.601338	1597.78218	-0.59529	-0.00031765	2.405	0.0012833	1.8097	0.00096565	533.602415796387	24.763	0.30494	24.588	24.383	24.688	-0.17484					10	6	2	0	0	0	0.024856	1	1104	1104		13.508	0	1	59014			91178	1834	63267	63371	101811	101811					0.007203706384643738
YREREDDTQ	9	Unmodified	_YREREDDTQ_					0	0	0			REV__MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	REV__MARVELD2|p.E527Nfs*6|1|0.19|ENSG00000152939|chr5:69441548-69441548|A/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	405.2171325683594	3	404.514424	1210.52144	-0.35626	-0.00014411	1.7735	0.00071741	1.4173	0.0005733	404.5150336708659	22.173	0.66691	21.971	21.663	22.33	-0.20198					32	13	3	0	0	0	0.024488	1	745	745		20.03	9.4437	1	79060	+		91179	24870	63268	63372	101812	101812					-0.07539634132058382
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	557.2685546875	2	557.269813	1112.52507	-0.91319	-0.00050889	0.22806	0.00012709	-0.68513	-0.0003818	557.2698656880557	48.547	0.7722	48.45	48.186	48.958	-0.097553					54	20	4	0	0	0	0.37611	1	4831	4831		67.494	8.7117	1	2464900			91180	18250;18249	63269	63373	101813	101813					-0.026689195675317023
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	557.2688598632812	2	557.269813	1112.52507	-0.70174	-0.00039106	-0.015147	-8.4409E-06	-0.71689	-0.0003995	557.2697616832978	48.909	0.69283	48.629	48.394	49.086	-0.27977					50	18	4	0	0	0	0.14024	1	4873	4873		101.6	22.15	1	2682200			91181	18250;18249	63269	63373	101814	101814					-0.026689195675317023
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	557.269813	1112.52507	-0.35872	-0.00019991	-2.0034	-0.0011165	-2.3622	-0.0013164	557.2695660333418	48.58	2.1124	48.58	48.003	50.116	0	0.029188	-0.0021985	NaN	101.6	117	59	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1370000			91182	18250;18249	63269	63373							-0.026689195675317023
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	557.269813	1112.52507	-0.70516	-0.00039296	-0.0076415	-4.2584E-06	-0.7128	-0.00039722	557.269754940287	48.734	0.67539	48.581	48.295	48.97	-0.15277	0.03063	2.585E-05	NaN	101.6	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161900			91183	18250;18249	63269	63373							-0.026689195675317023
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	557.269813	1112.52507	-0.17087	-9.5223E-05	-2.4093	-0.0013426	-2.5801	-0.0014378	557.2692476402553	48.459	1.4876	48.526	47.97	49.458	0.066795	-0.025195	-0.0026509	NaN	101.6	103	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1230200			91184	18250;18249	63269	63373							-0.026689195675317023
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	557.269813	1112.52507	-0.42485	-0.00023676	-0.28664	-0.00015974	-0.7115	-0.00039649	557.2696475329011	48.721	0.65372	48.539	48.268	48.921	-0.18206	-0.011948	-0.00028511	NaN	101.6	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2424500			91185	18250;18249	63269	63373							-0.026689195675317023
YRGIFPVL	8	Unmodified	_YRGIFPVL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	482.7843322753906	2	482.78437	963.554188	0.15862	7.6582E-05	-0.065129	-3.1443E-05	0.093496	4.5138E-05	482.7841340513957	72.666	0.99342	72.675	72.371	73.365	0.009758					68	24	4	0	0	0	0.95417	1	8796	8796		44.531	5.5096	1	1708200			91186	1358	63270	63374	101815	101815					0.07095269519413705
YRGPANGF	8	Unmodified	_YRGPANGF_					0	0	0		ENSG00000135387|ENST00000341394|CAPRIN1;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENST00000531668.1_1_11:34117397-34120911:+|nuORF	ENSG00000135387|ENST00000341394|CAPRIN1	ENSG00000135387|ENST00000341394|CAPRIN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	441.21697998046875	2	441.216852	880.419151	-1.0469	-0.00046192	1.2614	0.00055653	0.21443	9.4612E-05	441.2173053569544	37.763	0.96891	37.544	37.152	38.121	-0.2195					55	26	3	0	0	0	0.65272	1	3053	3053		71.378	7.1706	1	2554800			91187	4888	63271	63375	101816	101816					-0.025842106223308292
YRGPRCVDNK	10	Unmodified	_YRGPRCVDNK_					0	0	0			REV__ENSG00000129244|ENST00000250111|ATP1B2	REV__ENSG00000129244|ENST00000250111|ATP1B2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	403.2071838378906	3	403.204868	1206.59277	1.7549	0.00070757	3.6352	0.0014657	5.3901	0.0021733	403.2063348126522	35.06	1.1418	35.104	34.756	35.898	0.044056					86	29	5	0	0	0	1.0177	1	2635	2635		43.651	6.1426	1	7299400	+		91188	23038	63272	63376	101817	101817					-0.002257929083725685
YRGVRIGG	8	Unmodified	_YRGVRIGG_					0	0	0		ENST00000463982.2_1_3:137890290-137893637:-|nuORF;ENSG00000138231|ENST00000260803|DBR1	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	439.2519836425781	2	439.253769	876.492984	0.69602	0.00030573	-3.4805	-0.0015288	-2.7845	-0.0012231	439.25217434324423	90.16	0.91758	90.022	89.575	90.493	-0.13824					54	21	4	0	0	0	1.0574	1	11014	11014		20.482	0	1	1418600			91189	5220	63273	63377	101818	101818					0.049797575399907146
YRILQKANL	9	Unmodified	_YRILQKANL_					0	0	0		nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	559.2505493164062	2	559.837665	1117.66078	0.35198	0.00019705	-1.5678	-0.00087773	-1.2158	-0.00068067	560.3383743963154	43.177	0.33117	43.208	43.082	43.413	0.030827					12	8	2	0	0	0	0.024506	1	3978	3978		38.806	1.647	1	133740			91190	5237	63274	63378	101819	101819					0.10665400013931503
YRIRPPDP	8	Unmodified	_YRIRPPDP_					0	0	0			REV__nc|ENSG00000079263|Q13342-3|SP140	REV__nc|ENSG00000079263|Q13342-3|SP140	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	507.2833251953125	2	507.279983	1012.54541	2.5049	0.0012707	4.0223	0.0020404	6.5272	0.0033111	507.28211952136843	18.275	1.3273	18.275	17.94	19.268	0					60	26	5	0	0	0	0.94517	1	281	281		45.952	3.0877	1	2841700	+		91191	20631	63275	63379	101820	101820					0.039642958829290365
YRKKKQLM	8	Oxidation (M)	_YRKKKQLM(Oxidation (M))_		YRKKKQLM(1)		YRKKKQLM(42)	0	0	1		ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENSG00000142541|ENST00000391857|RPL13A	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENST00000425147.1_1_21:26734448-26734742:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.8182373046875	2	555.826243	1109.63793	1.4609	0.00081198	-2.1791	-0.0012112	-0.71822	-0.0003992	555.8251126497871	16.771	0.20678	16.617	16.449	16.656	-0.15376					7	4	2	0	0	0	0.96719	1	99	99		42.474	6.8562	1	23225			91192	14060	63276	63380	101821	101821		500			0.08750057624820329
YRKKRNKFREF	11	Unmodified	_YRKKRNKFREF_					0	0	0			REV__ENSG00000166012|ENST00000448108|TAF1D	REV__ENSG00000166012|ENST00000448108|TAF1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2483520507812	3	524.635431	1570.88446	-0.53713	-0.0002818	-3.011	-0.0015797	-3.5481	-0.0018615	524.6336913960585	26.821	0.29846	26.664	26.503	26.802	-0.15664					17	6	3	0	0	0	0.024876	1	1386	1386		9.2118	2.8909	1	60053	+		91193	25958	63277	63381	101822	101822					0.121856884480394
YRKMYGDM	8	Oxidation (M)	_YRKM(Oxidation (M))YGDM_		YRKM(0.999)YGDM(0.001)		YRKM(29)YGDM(-29)	0	0	1		nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2	nc|ENSG00000118523|P29279-2|CCN2	nc|ENSG00000118523|P29279-2|CCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	540.2338256835938	2	540.23607	1078.45759	-0.69106	-0.00037333	-3.6146	-0.0019527	-4.3057	-0.0023261	540.2341320885131	26.724	1.482	26.724	26.283	27.765	0					110	37	4	0	0	0	0.71833	1	1411	1411		65.803	14.61	2	5851700			91194	3691	63278	63382	101823	101823		140			-0.07850409094339739
YRKMYGDM	8	Oxidation (M)	_YRKM(Oxidation (M))YGDM_		YRKM(1)YGDM		YRKM(38)YGDM(-38)	0	0	1		nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2	nc|ENSG00000118523|P29279-2|CCN2	nc|ENSG00000118523|P29279-2|CCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	540.23388671875	2	540.23607	1078.45759	-0.98358	-0.00053136	-3.3469	-0.0018081	-4.3304	-0.0023395	540.2342969035095	26.695	1.6262	26.672	26.243	27.869	-0.023088					122	41	5	0	0	0	0.65272	1	1401	1401		71.378	18.441	2	6429000			91195	3691	63278	63382	101824	101824		140			-0.07850409094339739
YRKMYGDM	8	Oxidation (M)	_YRKM(Oxidation (M))YGDM_		YRKM(0.998)YGDM(0.002)		YRKM(28)YGDM(-28)	0	0	1		nc|ENSG00000118523|P29279-2|CCN2;ENSG00000118523|ENST00000367976|CCN2	nc|ENSG00000118523|P29279-2|CCN2	nc|ENSG00000118523|P29279-2|CCN2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	540.2340087890625	2	540.23607	1078.45759	-1.0465	-0.00056534	-3.356	-0.001813	-4.4025	-0.0023784	540.2342793222425	26.308	1.3828	26.389	26.01	27.392	0.081293					113	34	5	0	0	0	0.95679	1	1333	1333		44.117	8.4985	2	5038300			91196	3691	63278	63382	101825	101825		140			-0.07850409094339739
YRLGITITV	9	Unmodified	_YRLGITITV_					0	0	0			REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.3119506835938	2	518.313492	1034.61243	-0.29159	-0.00015114	-1.1448	-0.00059338	-1.4364	-0.00074452	518.3127201684309	62.89	0.337	62.706	62.618	62.955	-0.18386					12	8	2	0	0	0	0.6504	1	7100	7100		49.442	0	1	710370	+		91197	22015	63279	63383	101826	101826					0.09650906374008628
YRLGITITV	9	Unmodified	_YRLGITITV_					0	0	0			REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.313492	1034.61243	-0.19951	-0.00010341	-0.5696	-0.00029523	-0.7691	-0.00039864	518.3128842316389	62.922	0.39332	62.701	62.547	62.94	-0.22097	-0.030879	0.00035903	NaN	49.442	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399320	+		91198	22015	63279	63383							0.09650906374008628
YRLGITITV	9	Unmodified	_YRLGITITV_					0	0	0			REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	518.313492	1034.61243	-0.29159	-0.00015114	-1.1448	-0.00059338	-1.4364	-0.00074452	518.3127201684309	62.89	0.337	62.706	62.618	62.955	-0.18386	-0.024998	-0.00023727	NaN	49.442	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710370	+		91199	22015	63279	63383							0.09650906374008628
YRLGITITV	9	Unmodified	_YRLGITITV_					0	0	0			REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	REV__PRPH2|p.D291Efs*10|1|0.2|ENSG00000112619|chr6:42698463-42698464|-/T|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.313492	1034.61243	0.043913	2.2761E-05	-1.3563	-0.000703	-1.3124	-0.00068024	518.3125993490122	63.046	0.32874	62.787	62.631	62.96	-0.25824	0.055877	-0.0004565	NaN	49.442	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403100	+		91200	22015	63279	63383							0.09650906374008628
YRLLEGVYL	9	Unmodified	_YRLLEGVYL_					0	0	0			REV__ENSG00000083807|ENST00000263093|SLC27A5	REV__ENSG00000083807|ENST00000263093|SLC27A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	563.3191528320312	2	563.318774	1124.623	0.10361	5.8363E-05	0.03223	1.8156E-05	0.13584	7.6519E-05	563.3185949025449	95.66	1.0493	95.664	95.175	96.224	0.0033722					75	24	4	0	0	0	0.43973	1	12181	12181		63.306	8.5839	1	1775500	+		91201	20722	63280	63384	101827	101827					0.06566889028476908
YRLMFRGL	8	Unmodified	_YRLMFRGL_					0	0	0			REV__ENST00000527005.5_1_6:135286419-135303731:-|nuORF	REV__ENST00000527005.5_1_6:135286419-135303731:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	528.2570190429688	2	528.294579	1054.57461	-0.35203	-0.00018598	2.5664	0.0013558	2.2144	0.0011699	528.2955014202937	45.448	1.0045	45.195	44.67	45.674	-0.25252					55	27	3	0	0	0	0.027866	1	4216	4216		28.254	12.612	1	1610800	+		91202	21997	63281	63385	101828	101828					0.04950116907593838
YRLQPGLL	8	Unmodified	_YRLQPGLL_					0	0	0		nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;MICAL1|p.E559Sfs*15|1|0.32|ENSG00000135596|chr6:109448384-109448384|T/-|frameshift_variant;ENST00000456101.6_1_6:109766698-109772967:-|nuORF	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	nc|ENSG00000135596|Q8TDZ2-2|MICAL1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	480.2894287109375	2	480.287277	958.560001	-0.10628	-5.1045E-05	0.91754	0.00044068	0.81126	0.00038964	480.2880051124295	65.834	0.64575	65.864	65.552	66.197	0.030098					56	16	4	0	0	0	0.81662	1	7754	7754		57.811	4.4598	1	6345600			91203	4910	63282	63386	101829	101829					0.07906368031081001
YRLYILMH	8	Unmodified	_YRLYILMH_					0	0	0			REV__ENST00000514672.1_1_5:81605958-81614116:+|nuORF	REV__ENST00000514672.1_1_5:81605958-81614116:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	555.2520141601562	2	554.802237	1107.58992	-0.64631	-0.00035857	1.8841	0.0010453	1.2378	0.00068672	554.8042583932133	57.477	0.40114	57.243	57.061	57.463	-0.23363					19	10	3	0	0	0	0.027866	1	6268	6268		37.028	18.704	1	115390	+		91204	34179	63283	63387	101830	101830					0.04042983704789549
YRMSQYYFND	10	Unmodified	_YRMSQYYFND_					0	0	0			REV__ENST00000483755.5_1_10:124742467-124749713:+|nuORF	REV__ENST00000483755.5_1_10:124742467-124749713:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	462.7611083984375	3	462.864289	1385.57104	-0.0079158	-3.664E-06	-3.526	-0.0016321	-3.5339	-0.0016357	462.86176640201904	48.702	0.17721	48.769	48.622	48.8	0.066795					6	4	2	0	0	0	0.03519	1	4897	4897		19.263	6.3052	1	63076	+		91205	27308	63284	63388	101831	101831					-0.10632642447603757
YRNLYKKA	8	Unmodified	_YRNLYKKA_					0	0	0		nc|ENSG00000132122|Q9NWH7-2|SPATA6;ENSG00000132122|ENST00000371847|SPATA6;ENST00000603831.5_1_1:48764387-48865024:-|nuORF	nc|ENSG00000132122|Q9NWH7-2|SPATA6	nc|ENSG00000132122|Q9NWH7-2|SPATA6	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	528.3046875	2	528.303458	1054.59236	2.8086	0.0014838	1.6119	0.00085156	4.4205	0.0023354	528.3041064426943	17.226	0.28963	17.226	17.06	17.349	0					9	5	2	0	0	0	1.0574	1	146	146		20.482	0	1	58587			91206	4573	63285	63389	101832	101832					0.06725155434082808
YRPGSVAYV	9	Unmodified	_YRPGSVAYV_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	506.26611328125	2	506.266542	1010.51853	-0.79157	-0.00040075	-0.82354	-0.00041693	-1.6151	-0.00081768	506.26585301068525	45.077	0.41511	44.978	44.633	45.048	-0.099449					26	10	3	0	0	0	0.70156	1	4244	4244		45.972	7.1661	1	2525900			91207	4531	63286	63390	101833	101833					0.013691872717458864
YRPGSVAYV	9	Unmodified	_YRPGSVAYV_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	506.2663879394531	2	506.266542	1010.51853	-0.33507	-0.00016964	-4.2541	-0.0021537	-4.5892	-0.0023233	506.2639188096115	45.214	0.71574	44.961	44.709	45.425	-0.25252					50	19	4	0	0	0	0.80003	1	4260	4260		39.253	5.0803	1	2651300			91208	4531	63286	63390	101834	101834					0.013691872717458864
YRPGSVAYV	9	Unmodified	_YRPGSVAYV_					0	0	0		nc|ENSG00000131473|P53396-3|ACLY;nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-3|ACLY	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	506.2664794921875	2	506.266542	1010.51853	-0.57456	-0.00029088	-3.6928	-0.0018695	-4.2674	-0.0021604	506.26429154575186	45.212	0.60717	45.001	44.677	45.284	-0.21109					45	16	4	0	0	0	0.80003	2	4243	4243;4254		39.253	5.0803	1	2565100			91209	4531	63286	63390	101835;101836	101835					0.013691872717458864
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	438.75042724609375	2	438.750527	875.486502	-0.50989	-0.00022371	0.42815	0.00018785	-0.081736	-3.5862E-05	438.7505935092075	45.034	0.60835	44.782	44.549	45.157	-0.25252					46	15	4	0	0	0	0.33369	1	4229	4229		106.42	17.772	1	1846300			91210	7790;15600	63287	63391	101837	101837					0.04377819588614784
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	438.75079345703125	2	438.750527	875.486502	-0.1118	-4.9054E-05	0.012036	5.2809E-06	-0.099768	-4.3773E-05	438.75040063046026	44.996	0.66277	44.785	44.554	45.217	-0.21109					47	17	4	0	0	0	0.50239	1	4229	4229		85.359	13.982	1	1583100			91211	7790;15600	63287	63391	101838	101838					0.04377819588614784
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	438.750527	875.486502	-0.48301	-0.00021192	0.66271	0.00029076	0.1797	7.8843E-05	438.75062518304964	44.775	0.79249	44.775	44.485	45.278	0	-0.001949	0.00011419	NaN	106.42	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1698600			91212	7790;15600	63287	63391							0.04377819588614784
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	438.750527	875.486502	-0.73583	-0.00032285	0.84813	0.00037212	0.1123	4.9272E-05	438.75074017747943	44.897	0.72577	44.749	44.488	45.214	-0.1488	-0.028214	0.0002769	NaN	106.42	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1643700			91213	7790;15600	63287	63391							0.04377819588614784
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000168148|ENST00000366696|H3-4;ENSG00000273983|ENST00000614378|H3C8;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000203811|ENST00000369158|H3C14;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000168148|ENST00000366696|H3-4;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENSG00000168148|ENST00000366696|H3-4	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	438.750527	875.486502	0.042998	1.8865E-05	0.2187	9.5954E-05	0.2617	0.00011482	438.7504702059597	44.761	0.69806	44.798	44.542	45.24	0.0369	0.021202	-0.00027543	NaN	106.42	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1754000			91214	7790;15600	63287	63391							0.04377819588614784
YRPPELLL	8	Unmodified	_YRPPELLL_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000065883|ENST00000181839|CDK13;ENSG00000136807|ENST00000373264|CDK9	ENSG00000065883|ENST00000181839|CDK13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	500.79559326171875	2	500.794935	999.575317	-0.47683	-0.0002388	1.258	0.00063001	0.78118	0.00039121	500.7955052595396	66.94	1.2688	66.658	66.409	67.678	-0.28149					73	33	4	0	0	0	0.95679	1	7961	7961		44.117	12.162	1	6549200			91215	1322;7665;5045	63288	63392	101839	101839					0.07551234828292763
YRPPELLL	8	Unmodified	_YRPPELLL_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000065883|ENST00000181839|CDK13;ENSG00000136807|ENST00000373264|CDK9	ENSG00000065883|ENST00000181839|CDK13	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	500.7955627441406	2	500.794935	999.575317	-0.21565	-0.000108	0.86396	0.00043267	0.64831	0.00032467	500.795285458063	66.724	1.2832	66.754	66.435	67.718	0.030106					71	31	4	0	0	0	1.0009	2	7847	7847;7871		37.159	5.2042	1	5464100			91216	1322;7665;5045	63288	63392	101840;101841	101840					0.07551234828292763
YRQHIYSL	8	Unmodified	_YRQHIYSL_					0	0	0			REV__nc|ENSG00000058091|O94921-3|CDK14	REV__nc|ENSG00000058091|O94921-3|CDK14	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	540.23388671875	2	540.285266	1078.55598	-1.1639	-0.00062883	-4.364	-0.0023578	-5.5278	-0.0029866	540.2827674827536	26.513	0.38527	26.595	26.372	26.758	0.081293					14	8	2	0	0	0	0.027866	1	1294	1294		53.351	2.016	1	64210	+		91217	20228	63289	63393	101842	101842					0.01984278537361206
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	540.8047485351562	3	539.984228	1616.93085	-0.7498	-0.00040488	1.9441	0.0010498	1.1943	0.00064489	539.9854279023691	103.36	1.1963	103.36	102.92	104.12	0					46	28	2	0	0	0	0.024902	1	13275	13275		3.026	2.6855	1	76249			91218	8580	63290	63394	101843	101843					0.14706566122708864
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	539.8058471679688	3	539.984228	1616.93085	-0.064838	-3.5011E-05	1.0152	0.0005482	0.95038	0.00051319	539.9850396700892	103.61	1.2668	103.49	102.94	104.21	-0.12724					40	31	2	0	0	0	0.024904	1	12817	12817		0.31226	0.31226	1	84825			91219	8580	63290	63394	101844	101844					0.14706566122708864
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		3	539.984228	1616.93085	-0.56955	-0.00030755	1.6154	0.0008723	1.0459	0.00056475	539.9853351392704	103.41	1.2167	103.42	102.89	104.11	0.0054245	-0.12121	0.0001087	NaN	2.8518	47	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87687			91220	8580	63290	63394							0.14706566122708864
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		3	539.984228	1616.93085	-0.51836	-0.00027991	1.6947	0.00091513	1.1764	0.00063522	539.9851650721628	103.68	1.1942	103.68	103.14	104.34	-0.0032196	0.13596	0.00023718	NaN	2.8518	65	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94935			91221	8580	63290	63394							0.14706566122708864
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	539.984228	1616.93085	-0.61544	-0.00033233	1.5705	0.00084804	0.95505	0.00051571	539.9853297232962	103.79	0.81994	103.66	103.2	104.02	-0.12928	0.1183	3.5916E-05	NaN	2.8518	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64351			91222	8580	63290	63394							0.14706566122708864
YRREAVKQY	9	Unmodified	_YRREAVKQY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	404.887451171875	3	404.887645	1211.64111	0.82554	0.00033425	-0.83356	-0.0003375	-0.0080259	-3.2496E-06	404.887328288748	22.494	0.59839	22.305	22.055	22.653	-0.18894					44	12	5	0	0	0	0.70156	2	824	810;824		45.972	20.846	1	1597000			91223	8050	63291	63395	101845;101846	101846					0.043750240031840804
YRREAVKQY	9	Unmodified	_YRREAVKQY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	404.88775634765625	3	404.887645	1211.64111	0.2354	9.5309E-05	-0.28963	-0.00011727	-0.054238	-2.196E-05	404.8875355870569	22.716	0.68801	22.531	22.281	22.969	-0.18539					38	14	4	0	0	0	0.6238	1	825	825		51.193	7.5419	1	1566200			91224	8050	63291	63395	101847	101847					0.043750240031840804
YRREAVKQY	9	Unmodified	_YRREAVKQY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	404.88763427734375	3	404.887645	1211.64111	0.46075	0.00018655	-0.57845	-0.00023421	-0.1177	-4.7657E-05	404.88742772415054	22.695	0.69196	22.493	22.194	22.886	-0.20199					45	14	5	0	0	0	0.70156	1	809	809		45.972	7.2186	1	1530800			91225	8050	63291	63395	101848	101848					0.043750240031840804
YRSHALLALL	10	Unmodified	_YRSHALLALL_					0	0	0			REV__ENST00000463411.1_1_5:176919279-176923513:-|nuORF	REV__ENST00000463411.1_1_5:176919279-176923513:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	578.2326049804688	2	578.84549	1155.67643	-1.6512	-0.00095578	-1.2348	-0.00071477	-2.886	-0.0016705	578.8447246686825	38.79	0.45051	38.79	38.555	39.006	0					24	11	3	0	0	0	0.03519	1	3311	3311		27.882	1.1893	1	441490	+		91226	32934	63292	63396	101849	101849					0.10481686530988554
YRSKEPVRF	9	Unmodified	_YRSKEPVRF_					0	0	0		ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENST00000396387.2_1_22:42503789-42504386:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	591.32421875	2	591.324922	1180.63529	-0.38705	-0.00022887	-0.13588	-8.035E-05	-0.52294	-0.00030923	591.3247107370402	47.214	1.5891	47.273	46.957	48.546	0.059097					94	45	4	0	0	0	0.53979	1	4669	4669		56.721	5.3856	1	4011200			91227	13553	63293	63397	101850	101850					0.05219925491496724
YRTIPGLHAT	10	Unmodified	_YRTIPGLHAT_					0	0	0		chr7:64993414-64999121|357|19.15|0.0|20.87|-|1|TE_info:HERV3-int,HERV3-int_dup105,ERV1,LTR,donor,-,64999121,64999343|ERV3-1,None|2	chr7:64993414-64999121|357|19.15|0.0|20.87|-|1|TE_info:HERV3-int,HERV3-int_dup105,ERV1,LTR,donor,-,64999121,64999343|ERV3-1,None|2	chr7:64993414-64999121|357|19.15|0.0|20.87|-|1|TE_info:HERV3-int,HERV3-int_dup105,ERV1,LTR,donor,-,64999121,64999343|ERV3-1,None|2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.8118896484375	2	564.811648	1127.60874	1.0983	0.00062031	1.4357	0.00081092	2.534	0.0014312	564.8125357722059	17.786	0.99011	17.632	17.209	18.2	-0.15403					24	19	2	0	0	0	1.0508	1	229	229		39.253	1.4413	1	121560			91228	427	63294	63398	101851	101851					0.050042366001889604
YRTKRHQKF	9	Unmodified	_YRTKRHQKF_					0	0	0		ENSG00000196468|ENST00000439435|FGF16	ENSG00000196468|ENST00000439435|FGF16	ENSG00000196468|ENST00000439435|FGF16	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	422.51312255859375	3	421.907151	1262.69962	-0.096514	-4.072E-05	0.46087	0.00019444	0.36436	0.00015372	421.90700012216433	31.451	0.75982	31.52	31.208	31.967	0.068962					31	18	2	0	0	0	0.024541	1	2110	2110		36.447	21.114	1	69574			91229	9879	63295	63399	101852	101852					0.0787812536830188
YRYEIDVA	8	Unmodified	_YRYEIDVA_					0	0	0			REV__ENSG00000173281|ENST00000310455|PPP1R3B	REV__ENSG00000173281|ENST00000310455|PPP1R3B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7881469726562	2	514.756007	1027.49746	-0.46329	-0.00023848	-3.3411	-0.0017198	-3.8044	-0.0019583	514.7541467430424	27.377	0.77269	27.364	27.067	27.84	-0.012983					45	20	3	0	0	0	0.027866	1	1540	1540		42.474	6.8562	1	672350	+		91230	26762	63296	63400	101853	101853					-0.015188228277793314
YRYIGKTM	8	Unmodified	_YRYIGKTM_					0	0	0		ENST00000478899.1_1_1:156707192-156707995:-|nuORF;ENSG00000143314|ENST00000361531|MRPL24	ENST00000478899.1_1_1:156707192-156707995:-|nuORF	ENST00000478899.1_1_1:156707192-156707995:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	516.2667846679688	2	516.27077	1030.52699	-0.44993	-0.00023229	-0.73329	-0.00037858	-1.1832	-0.00061087	516.2706563454648	51.258	1.4526	51.109	50.256	51.709	-0.14916					92	41	4	0	0	0	0.81662	1	5374	5374		57.811	1.0902	1	7150600			91231	5629	63297	63401	101854	101854					0.012944179167106995
YSAAFLLSV	9	Unmodified	_YSAAFLLSV_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MSMS	OPSCC_39_ClassI_Rep-1	1	485.7654113769531	2	485.765843	969.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.87	1	101.87	101.37	102.37	0								0	0	0	0.61872	1	13047	13047		37.159	6.6555	1				91232	3694	63298	63402	101855	101855					0.03115553182988151
YSAGSFSLAY	10	Unmodified	_YSAGSFSLAY_					0	0	0			REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	REV__ENST00000515518.6_1_5:109760554-109978041:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.248291015625	2	533.248015	1064.48148	-0.91337	-0.00048705	0.17138	9.1387E-05	-0.74199	-0.00039566	533.2481041637039	49.052	2.497	48.772	48.429	50.926	-0.27977					186	66	5	0	0	0	0.60198	1	4963	4963		76.774	0	1	68390000	+		91233	27900	63299	63403	101856	101856					-0.0481852906466429
YSAIKNLGGL	10	Unmodified	_YSAIKNLGGL_					0	0	0		ENST00000527141.5_1_11:66331945-66334941:-|nuORF;ENSG00000174080|ENST00000310325|CTSF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.2978515625	2	518.295299	1034.57605	-0.17628	-9.1363E-05	3.6713	0.0019028	3.495	0.0018114	518.2972997423105	102.64	2.7028	102.65	101.78	104.48	0.0073471					242	66	5	0	0	0	0.66532	1	13180	13180		69.628	1.1429	1	66134000			91234	8439	63300	63404	101857	101857					0.060140294773418645
YSAIKNLGGL	10	Unmodified	_YSAIKNLGGL_					0	0	0		ENST00000527141.5_1_11:66331945-66334941:-|nuORF;ENSG00000174080|ENST00000310325|CTSF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	518.2975463867188	2	518.295299	1034.57605	-0.1979	-0.00010257	3.8078	0.0019735	3.6099	0.001871	518.2973986074476	102.7	2.9604	102.7	101.67	104.63	-0.0046082					228	70	5	0	0	0	0.60198	2	13205	13181;13205		76.774	18.963	1	70878000			91235	8439	63300	63404	101858;101859	101859					0.060140294773418645
YSAIKNLGGL	10	Unmodified	_YSAIKNLGGL_					0	0	0		ENST00000527141.5_1_11:66331945-66334941:-|nuORF;ENSG00000174080|ENST00000310325|CTSF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.29736328125	2	518.295299	1034.57605	0.33697	0.00017465	3.1438	0.0016294	3.4807	0.0018041	518.2968087323576	102.58	1.456	102.41	101.78	103.24	-0.17178					76	35	4	0	0	0	0.69662	1	12754	12754		67.494	3.2864	1	4621500			91236	8439	63300	63404	101860	101860					0.060140294773418645
YSAIVGSIE	9	Unmodified	_YSAIVGSIE_					0	0	0			REV__nc|ENSG00000100884|O95741-2|CPNE6	REV__nc|ENSG00000100884|O95741-2|CPNE6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.7462463378906	2	469.745108	937.475663	0.72593	0.000341	0.82333	0.00038676	1.5493	0.00072776	469.7452972867687	19.783	0.49409	19.55	19.325	19.819	-0.23345					28	9	4	0	0	0	0.67308	1	437	437		47.916	1.9636	1	305670	+		91237	36524	63301	63405	101861	101861					0.00442372423674442
YSALDGTINAH	11	Unmodified	_YSALDGTINAH_					0	0	0		nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-2|FAM135A	nc|ENSG00000082269|Q9P2D6-2|FAM135A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	581.8089599609375	2	581.280377	1160.5462	4.8247	0.0028045	-2.7902	-0.0016219	2.0345	0.0011826	581.2787112979568	17.917	0.43294	17.977	17.825	18.258	0.06036					15	9	3	0	0	0	0.024798	1	192	192		25.574	2.5316	1	54961			91238	1730	63302	63406	101862	101862					-0.027649542586686948
YSAQDQAPSV	10	Unmodified	_YSAQDQAPSV_					0	0	0		nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2483520507812	2	533.246003	1064.47745	-1.0831	-0.00057753	4.0377	0.0021531	2.9546	0.0015755	533.2481370410795	48.699	2.0979	48.598	48.253	50.351	-0.1008					172	55	5	0	0	0	0.47897	1	4940	4940		90.601	18.723	1	66025000			91239	5633	63303	63407	101863	101863					-0.05220618558382739
YSAQDQAPSV	10	Unmodified	_YSAQDQAPSV_					0	0	0		nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	nc|ENSG00000143324|Q9UBH6-2|XPR1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2479248046875	2	533.246003	1064.47745	-0.57934	-0.00030893	3.5178	0.0018758	2.9384	0.0015669	533.2478583373686	48.866	1.9773	48.684	48.339	50.316	-0.18206					166	52	5	0	0	0	0.65479	1	4944	4944		70.816	3.3225	1	64879000			91240	5633	63303	63407	101864	101864					-0.05220618558382739
YSARLVASVV	10	Unmodified	_YSARLVASVV_					0	0	0			REV__ENST00000503240.5_1_5:148743537-148748214:+|nuORF	REV__ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	533.2732543945312	2	532.808574	1063.60259	-0.0042979	-2.2899E-06	-3.6743	-0.0019577	-3.6786	-0.00196	532.8077984777466	49.975	0.52549	49.87	49.562	50.088	-0.10558					26	13	4	0	0	0	0.03519	1	5029	5029		47.657	8.8512	1	163110	+		91241	24442	63304	63408	101865	101865					0.07333718368658992
YSARNLNP	8	Unmodified	_YSARNLNP_					0	0	0		ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	ENSG00000179008|ENST00000321731|C14orf39	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.7383117675781	2	467.740691	933.466829	-1.2142	-0.00056792	-3.5079	-0.0016408	-4.7221	-0.0022087	467.7389164460177	26.143	2.4161	25.98	25.457	27.873	-0.16331					129	61	4	0	0	0	0.99042	1	1315	1315		38.806	1.647	1	5217800			91242	8860	63305	63409	101866	101866					-0.0025655642216406704
YSASHVQFL	9	Unmodified	_YSASHVQFL_					0	0	0			REV__ENST00000360083.3_1_2:214142443-214148802:-|nuORF	REV__ENST00000360083.3_1_2:214142443-214148802:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	525.3214721679688	2	526.263999	1050.51345	0.89737	0.00047225	-1.7725	-0.00093281	-0.87515	-0.00046056	526.2629762629325	20.064	1.2244	19.864	19.255	20.48	-0.2001					38	24	2	0	0	0	0.024323	1	457	457		53.351	12.779	1	79722	+		91243	30896	63306	63410	101867	101867					-0.0097911659086094
YSCILDTYL	9	Unmodified	_YSCILDTYL_					0	0	0		ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	ENST00000511335.5_1_6:97720608-97720671:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	545.2750854492188	2	545.759901	1089.50525	-0.28493	-0.0001555	2.0329	0.0011095	1.748	0.00095397	545.761756481178	77.736	0.41407	77.525	77.29	77.705	-0.21087					16	9	2	0	0	0	0.021616	1	9561	9561		110.34	24.978	1	171660			91244	15835	63307	63411	101868	101868					-0.03592431622519143
YSCRKLSP	8	Unmodified	_YSCRKLSP_					0	0	0			REV__ENST00000551005.5_1_12:50537730-50537772:-|nuORF	REV__ENST00000551005.5_1_12:50537730-50537772:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	476.2672424316406	2	477.247295	952.480036	-0.16041	-7.6554E-05	-3.7081	-0.0017697	-3.8685	-0.0018462	477.2454239708194	54.409	0.45202	54.273	54.053	54.505	-0.13617					21	12	2	0	0	0	0.027866	1	5816	5816		82.305	32.28	1	256500	+		91245	34922	63308	63412	101869	101869					0.0018955836558234296
YSCRKLSP	8	Unmodified	_YSCRKLSP_					0	0	0			REV__ENST00000551005.5_1_12:50537730-50537772:-|nuORF	REV__ENST00000551005.5_1_12:50537730-50537772:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	477.247295	952.480036	-0.034109	-1.6278E-05	-3.8335	-0.0018295	-3.8676	-0.0018458	477.24532517909233	54.563	0.46912	54.318	54.01	54.479	-0.2453	0.0351	0.00013359	NaN	82.305	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307600	+		91246	34922	63308	63412							0.0018955836558234296
YSCRKLSP	8	Unmodified	_YSCRKLSP_					0	0	0			REV__ENST00000551005.5_1_12:50537730-50537772:-|nuORF	REV__ENST00000551005.5_1_12:50537730-50537772:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	477.247295	952.480036	0.67324	0.0003213	-4.5338	-0.0021637	-3.8605	-0.0018424	477.2450871652225	54.464	0.45211	54.258	54.016	54.468	-0.20613	-0.025095	-0.00053484	NaN	82.305	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242720	+		91247	34922	63308	63412							0.0018955836558234296
YSDFPFPEDY	10	Unmodified	_YSDFPFPEDY_					0	0	0		ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	ENSG00000010932|ENST00000617670|FMO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	640.2174072265625	2	640.261319	1278.50808	-1.4268	-0.00091352	-3.0059	-0.0019246	-4.4327	-0.0028381	640.260241184488	72.084	0.20329	71.809	71.706	71.91	-0.27509					9	4	3	0	0	0	0.03519	1	8444	8444		124.59	39.433	1	47215			91248	883	63309	63413	101870	101870					-0.12002884963976612
YSDGRWTP	8	Unmodified	_YSDGRWTP_					0	0	0		nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2;nc|ENSG00000118257|O60462-6|NRP2	nc|ENSG00000118257|O60462-4|NRP2	nc|ENSG00000118257|O60462-4|NRP2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	491.2713928222656	2	491.224874	980.435195	0.022663	1.1133E-05	-3.4743	-0.0017067	-3.4516	-0.0016955	491.2231265823301	63.439	0.43142	63.188	63.013	63.444	-0.25141					15	11	2	0	0	0	0.027866	1	7387	7387		30.504	6.3009	1	120090			91249	3674	63310	63414	101871	101871					-0.055805491761020676
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	535.2142333984375	2	535.214703	1068.41485	-0.66861	-0.00035785	0.047928	2.5652E-05	-0.62068	-0.0003322	535.214704579641	30.042	1.3919	29.798	29.358	30.75	-0.24415					106	32	5	0	0	0	0.02722	5	1882	1860;1870;1882;1894;1906		157.33	75.089	1	12985000			91250	5954	63311	63415	101872;101873;101874;101875;101876	101874					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	535.214111328125	2	535.214703	1068.41485	-1.1887	-0.00063622	0.41297	0.00022103	-0.77575	-0.0004152	535.2149048452891	29.859	1.4301	29.687	29.325	30.755	-0.17258					99	33	5	0	0	0	0.00019617	5	1863	1840;1851;1863;1875;1887		195.81	105.44	1	12759000			91251	5954	63311	63415	101877;101878;101879;101880;101881	101879					-0.11661764626546756
YSDHPSGGSY	10	Unmodified	_YSDHPSGGSY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	535.21435546875	2	535.214703	1068.41485	-0.61723	-0.00033035	-0.079245	-4.2413E-05	-0.69647	-0.00037276	535.2146169429816	29.773	1.6375	29.623	29.171	30.809	-0.14952					112	38	5	0	0	0	0.00019617	6	1827	1806;1815;1827;1839;1852;1866		195.81	110.65	1	11745000			91252	5954	63311	63415	101882;101883;101884;101885;101886;101887	101884					-0.11661764626546756
YSDIEGKKGH	10	Unmodified	_YSDIEGKKGH_					0	0	0			REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF	REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	568.2683715820312	2	567.28292	1132.55129	0.10055	5.704E-05	-1.6066	-0.00091139	-1.506	-0.00085435	567.2819709721651	45.883	0.29087	45.786	45.632	45.923	-0.096653					13	7	2	0	0	0	0.03519	1	4409	4409		42.396	0	1	238810	+		91253	33420	63312	63416	101888	101888					-0.009686503960438131
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	533.2470092773438	2	533.248015	1064.48148	-1.083	-0.00057753	0.26572	0.00014169	-0.81733	-0.00043584	533.2481370410795	48.699	2.0979	48.598	48.253	50.351	-0.1008					172	55	5	0	0	0	0.013293	9	4858	4824;4834;4846;4858;4870;4882;4895;4908;4922		190.52	96.511	1	66025000			91254	7617	63313	63417	101889;101890;101891;101892;101893;101894;101895;101896;101897	101892					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	533.2476806640625	2	533.248015	1064.48148	-0.91337	-0.00048705	0.17138	9.1387E-05	-0.74199	-0.00039566	533.2481041637039	49.052	2.497	48.772	48.429	50.926	-0.27977					186	66	5	0	0	0	0.013293	8	4887	4864;4875;4887;4899;4911;4923;4935;4949		176.09	90.727	1	68390000			91255	7617	63313	63417	101898;101899;101900;101901;101902;101903;101904;101905	101900					-0.0481852906466429
YSDKYGLGY	9	Unmodified	_YSDKYGLGY_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1;ENST00000564794.1_1_16:23700038-23701081:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	533.2481079101562	2	533.248015	1064.48148	-0.57934	-0.00030893	-0.25416	-0.00013553	-0.8335	-0.00044446	533.2478583373686	48.866	1.9773	48.684	48.339	50.316	-0.18206					166	52	5	0	0	0	0.013293	8	4851	4840;4851;4863;4875;4887;4899;4911;4930		190.52	96.511	1	64879000			91256	7617	63313	63417	101906;101907;101908;101909;101910;101911;101912;101913	101907					-0.0481852906466429
YSDLHAFYY	9	Unmodified	_YSDLHAFYY_					0	0	0		nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.7595825195312	2	589.761289	1177.50803	-0.7315	-0.00043141	-0.3121	-0.00018407	-1.0436	-0.00061548	589.7609200066717	62.986	0.2744	62.727	62.56	62.835	-0.25824					13	7	2	0	0	0	0.40179	1	7093	7093		65.803	12.866	1	794170			91257	9407	63314	63418	101914	101914					-0.0736284017334583
YSDLHAFYY	9	Unmodified	_YSDLHAFYY_					0	0	0		nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	nc|ENSG00000185090|Q5VSG8-3|MANEAL	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	589.761289	1177.50803	-0.51885	-0.000306	-1.55	-0.00091412	-2.0688	-0.0012201	589.760250428746	62.907	0.32793	62.686	62.489	62.817	-0.22097	-0.020625	-0.00073363	NaN	65.803	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	744350			91258	9407	63314	63418							-0.0736284017334583
YSDLHPQRET	10	Unmodified	_YSDLHPQRET_					0	0	0		ENST00000498780.5_1_2:201862166-201888732:-|nuORF;nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	ENST00000498780.5_1_2:201862166-201888732:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.20709228515625	3	415.866798	1244.57856	1.2916	0.00053714	1.5873	0.00066011	2.8789	0.0011973	415.8663845952271	36.859	0.51784	36.65	36.405	36.923	-0.2092					16	12	2	0	0	0	0.03519	1	2875	2875		49.536	3.5638	1	43577			91259	6485	63315	63419	101915	101915					-0.03394166855673575
YSDPDSGHY	9	Unmodified	_YSDPDSGHY_					0	0	0		nc|ENSG00000095370|Q8N5H7-3|SH2D3C;nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	520.7009887695312	2	520.701429	1039.3883	-0.40629	-0.00021156	0.063399	3.3012E-05	-0.34289	-0.00017855	520.701333229623	32.986	0.60114	32.821	32.516	33.117	-0.16565					37	14	3	0	0	0	0.20967	1	2298	2298		87.754	26.782	1	890640			91260	2023	63316	63420	101916	101916					-0.12981453517909358
YSDPDSGHY	9	Unmodified	_YSDPDSGHY_					0	0	0		nc|ENSG00000095370|Q8N5H7-3|SH2D3C;nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	520.701429	1039.3883	-0.45867	-0.00023883	0.26488	0.00013792	-0.19379	-0.00010091	520.7014119966216	33.14	0.72795	32.909	32.586	33.314	-0.23107	0.00025034	0.00021666	NaN	87.754	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	807520			91261	2023	63316	63420							-0.12981453517909358
YSDPDSGHY	9	Unmodified	_YSDPDSGHY_					0	0	0		nc|ENSG00000095370|Q8N5H7-3|SH2D3C;nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	nc|ENSG00000095370|Q8N5H7-3|SH2D3C	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	520.701429	1039.3883	0.11701	6.0926E-05	-0.27655	-0.000144	-0.15955	-8.3075E-05	520.701146761751	33.197	0.55555	32.997	32.73	33.286	-0.20019	0.088054	-0.00034718	NaN	87.754	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	857130			91262	2023	63316	63420							-0.12981453517909358
YSDPYVKTY	9	Unmodified	_YSDPYVKTY_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B;ENST00000564233.5_1_16:30017553-30018576:-|nuORF;ENST00000561671.5_1_16:30017707-30020344:-|nuORF;ENST00000564357.5_1_16:30017509-30018480:-|nuORF;ENSG00000149927|ENST00000350119|DOC2A	ENSG00000272636|ENST00000613549|DOC2B;ENSG00000149927|ENST00000350119|DOC2A	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	568.2681274414062	2	568.268947	1134.52334	-0.13304	-7.5603E-05	-0.050428	-2.8656E-05	-0.18347	-0.00010426	568.2687399573025	46.362	0.93513	46.101	45.701	46.637	-0.26118					70	24	4	0	0	0	0.014475	3	4445	4435;4445;4457		185.72	89.671	1	2972400			91263	11016;6125	63317	63421	101917;101918;101919	101918					-0.038539733761354
YSDPYVKTY	9	Unmodified	_YSDPYVKTY_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B;ENST00000564233.5_1_16:30017553-30018576:-|nuORF;ENST00000561671.5_1_16:30017707-30020344:-|nuORF;ENST00000564357.5_1_16:30017509-30018480:-|nuORF;ENSG00000149927|ENST00000350119|DOC2A	ENSG00000272636|ENST00000613549|DOC2B;ENSG00000149927|ENST00000350119|DOC2A	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	568.26806640625	2	568.268947	1134.52334	-0.71955	-0.0004089	0.11205	6.3675E-05	-0.6075	-0.00034522	568.2688884661131	46.198	0.93177	45.996	45.669	46.6	-0.20226					64	25	4	0	0	0	0.012922	3	4426	4416;4426;4439		195.05	104.27	1	4436300			91264	11016;6125	63317	63421	101920;101921;101922	101921					-0.038539733761354
YSDRSSGGSY	10	Unmodified	_YSDRSSGGSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.7251586914062	2	539.725435	1077.43632	-0.84621	-0.00045672	0.85991	0.00046412	0.013708	7.3985E-06	539.7257392110193	25.227	0.6857	25	24.708	25.394	-0.22683					40	15	4	0	0	0	0.18296	2	1172	1172;1184		123.21	27.393	1	834810			91265	2077;18120	63318	63422	101923;101924	101923					-0.09930379597835781
YSDRSSGGSY	10	Unmodified	_YSDRSSGGSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP;nc|ENSG00000099622|Q14011-3|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	539.725435	1077.43632	-0.48505	-0.00026179	0.56204	0.00030335	0.076992	4.1555E-05	539.7257309169215	25.078	0.52049	24.905	24.599	25.12	-0.17319	-0.047669	-0.0002194	NaN	123.21	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167290			91266	2077;18120	63318	63422							-0.09930379597835781
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	463.2142333984375	3	463.214086	1386.62043	0.044331	2.0535E-05	0.13977	6.4744E-05	0.1841	8.5279E-05	463.2140357963142	50.292	0.60257	50.012	49.693	50.295	-0.27977					43	15	4	0	0	0	0.33796	1	5089	5089		86.882	51.703	1	1453400			91267	3043	63319	63423	101925	101925					-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	463.214086	1386.62043	0.24485	0.00011342	-0.33925	-0.00015714	-0.094403	-4.3729E-05	463.2138185469136	49.922	0.71054	49.817	49.562	50.273	-0.10558	-0.080228	-0.00022935	NaN	86.882	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1329800			91268	3043	63319	63423							-0.05741611167127303
YSDVGRYIDHY	11	Unmodified	_YSDVGRYIDHY_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000526952.1_2_11:33789164-33793404:-|nuORF;ENST00000530013.5_1_11:33775932-33796043:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	463.214086	1386.62043	0.37777	0.00017499	-0.37315	-0.00017285	0.0046156	2.138E-06	463.21375229265954	50.043	0.56467	49.862	49.644	50.209	-0.18071	-0.034566	-0.00027646	NaN	86.882	45	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525000			91269	3043	63319	63423							-0.05741611167127303
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(180)Y	0	0	1		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.7496948242188	2	589.74973	1177.48491	-0.66067	-0.00038963	0.62051	0.00036594	-0.040162	-2.3685E-05	589.7500231656159	60.426	1.5067	60.223	59.797	61.303	-0.20322					108	37	5	0	0	0	0.013492	5	6725	6703;6714;6725;6737;6749		193.98	100.83	1	11851000			91270	2185;18010	63320	63424	101926;101927;101928;101929;101930	101928		82			-0.09673647072963831
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(120)Y	0	0	1		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	589.750244140625	2	589.74973	1177.48491	-0.60269	-0.00035544	0.71042	0.00041897	0.10772	6.353E-05	589.749940707766	63.409	3.7469	63.181	62.641	66.388	-0.22773					239	93	4	0	0	0	0.06122	3	7175	7151;7163;7175		124.59	39.235	1	2334500			91271	2185;18010	63320	63424	101931;101932;101933	101933		82			-0.09673647072963831
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(170)Y	0	0	1		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.7498168945312	2	589.74973	1177.48491	-1.3231	-0.00078029	1.0189	0.00060087	-0.30424	-0.00017942	589.7502749324815	60.312	1.5528	60.135	59.777	61.33	-0.1761					118	38	6	0	0	0	0.012965	5	6700	6691;6700;6712;6724;6737		187.63	89.051	1	12125000			91272	2185;18010	63320	63424	101934;101935;101936;101937;101938	101935		82			-0.09673647072963831
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(110)Y	0	0	1		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	589.74951171875	2	589.74973	1177.48491	-0.97878	-0.00057724	0.99065	0.00058424	0.011869	6.9995E-06	589.7501376585649	63.567	3.1378	63.374	62.636	65.774	-0.19243					186	78	3	0	0	0	0.11848	2	7154	7154;7184		106.42	28.686	1	2233700			91273	2185;18010	63320	63424	101939;101940	101939		82			-0.09673647072963831
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(170)Y	0	0	1		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.749267578125	2	589.74973	1177.48491	-1.1514	-0.00067904	0.74406	0.00043881	-0.40734	-0.00024023	589.7500843039018	60.482	1.7241	60.228	59.868	61.592	-0.25373					120	42	5	0	0	0	0.012965	6	6719	6697;6708;6719;6731;6743;6759		183.89	79.838	1	12237000			91274	2185;18010	63320	63424	101941;101942;101943;101944;101945;101946	101943		82			-0.09673647072963831
YSEEIVEMY	9	Oxidation (M)	_YSEEIVEM(Oxidation (M))Y_		YSEEIVEM(1)Y		YSEEIVEM(120)Y	0	0	1		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	589.749755859375	2	589.74973	1177.48491	-0.48386	-0.00028536	0.57835	0.00034108	0.094494	5.5728E-05	589.7498588107849	63.62	3.0958	63.361	62.663	65.759	-0.25824					190	77	4	0	0	0	0.074956	3	7231	7158;7183;7231		119.56	34.166	1	2424300			91275	2185;18010	63320	63424	101947;101948;101949	101949		82			-0.09673647072963831
YSEEIVEMY	9	Unmodified	_YSEEIVEMY_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.7525024414062	2	581.752272	1161.48999	-0.095278	-5.5428E-05	-0.5542	-0.00032241	-0.64948	-0.00037783	581.7518097250047	70.607	1.4026	70.335	69.994	71.397	-0.27185					83	35	3	0	0	0	0.06122	6	8234	8207;8216;8225;8234;8243;8253		124.59	58.791	1	5268400			91276	2185;18010	63320	63425	101950;101951;101952;101953;101954;101955	101953					-0.08429343210355
YSEEIVEMY	9	Unmodified	_YSEEIVEMY_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.7506713867188	2	581.752272	1161.48999	-0.7733	-0.00044987	0.077257	4.4945E-05	-0.69604	-0.00040492	581.7521339552712	70.644	1.667	70.387	69.976	71.643	-0.25713					94	42	3	0	0	0	0.08613	6	8231	8215;8221;8231;8241;8249;8258		115.46	47.269	1	5916000			91277	2185;18010	63320	63425	101956;101957;101958;101959;101960;101961	101958					-0.08429343210355
YSEEIVEMY	9	Unmodified	_YSEEIVEMY_					0	0	0		MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;MYH9|p.C172Lfs*4|1|0.14|ENSG00000100345|chr22:36327464-36327465|-/A|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.K1442Nfs*69|1|0.21|ENSG00000100345|chr22:36292004-36292004|C/-|frameshift_variant	MYH9|p.Q320Lfs*48|1|0.09|ENSG00000100345|chr22:36320273-36320274|-/TGAGGTTGTGCAGCACCGA|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.7518310546875	2	581.752272	1161.48999	-0.12176	-7.0833E-05	-0.59391	-0.00034551	-0.71567	-0.00041634	581.7517683906838	70.517	1.6728	70.303	69.977	71.65	-0.21425					81	42	3	0	0	0	0.08613	5	8219	8201;8210;8219;8225;8238		115.46	35.52	1	7729500			91278	2185;18010	63320	63425	101962;101963;101964;101965;101966	101964					-0.08429343210355
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	610.2722778320312	2	610.272552	1218.53055	-1.621	-0.00098924	1.7315	0.0010567	0.11052	6.7449E-05	610.2734662601403	39.385	0.94619	39.221	38.898	39.844	-0.16458					70	24	5	0	0	0	0.01976	3	3326	3326;3336;3348		163.15	64.569	1	5117400			91279	8692	63321	63426	101967;101968;101969	101967					-0.06997240775717728
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	610.2724609375	2	610.272552	1218.53055	-0.72818	-0.00044439	0.74546	0.00045493	0.017275	1.0542E-05	610.2729304506845	39.525	1.1183	39.302	38.961	40.079	-0.22311					76	28	5	0	0	0	0.014535	3	3336	3336;3345;3359		167.23	52.334	1	4226300			91280	8692	63321	63426	101970;101971;101972	101970					-0.06997240775717728
YSEGYPGQRY	10	Unmodified	_YSEGYPGQRY_					0	0	0		ENST00000579558.5_1_17:18243959-18259295:-|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000419974.2_1_1:44317163-44317268:-|nuORF;ENST00000395682.3_1_17:18256945-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	610.2721557617188	2	610.272552	1218.53055	-0.3304	-0.00020164	0.39489	0.00024099	0.064487	3.9355E-05	610.2726892694872	39.495	1.0271	39.269	38.946	39.973	-0.2257					72	25	4	0	0	0	0.0001074	3	3330	3330;3342;3353		204.62	95.146	1	4329400			91281	8692	63321	63426	101973;101974;101975	101973					-0.06997240775717728
YSELASHVVSY	11	Unmodified	_YSELASHVVSY_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	627.8033447265625	2	627.803685	1253.59282	-0.67147	-0.00042155	0.80293	0.00050408	0.13146	8.2528E-05	627.8039933330265	53.495	0.9022	53.363	53.061	53.963	-0.13195					70	26	5	0	0	0	0.00026108	1	5612	5612		162.25	79.502	1	2302900			91282	1315	63322	63427	101976	101976					-0.023835144273562037
YSELASHVVSY	11	Unmodified	_YSELASHVVSY_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	627.803955078125	2	627.803685	1253.59282	-0.88834	-0.0005577	0.71734	0.00045035	-0.171	-0.00010735	627.8040349982044	53.689	0.60493	53.443	53.199	53.804	-0.2453					51	17	4	0	0	0	0.023413	1	5628	5628		129.42	53.252	1	2945300			91283	1315	63322	63427	101977	101977					-0.023835144273562037
YSELASHVVSY	11	Unmodified	_YSELASHVVSY_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	627.80322265625	2	627.803685	1253.59282	-0.33262	-0.00020882	0.20855	0.00013093	-0.12406	-7.7888E-05	627.8036294076841	53.582	0.61375	53.385	53.126	53.74	-0.19739					49	17	4	0	0	0	5.6244E-07	1	5610	5610		176.09	80.053	1	2824900			91284	1315	63322	63427	101978	101978					-0.023835144273562037
YSEQSRWFE	9	Unmodified	_YSEQSRWFE_					0	0	0		NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	410.7139587402344	3	411.184127	1230.53055	-0.17601	-7.2372E-05	-3.3652	-0.0013837	-3.5412	-0.0014561	411.18265517454125	27.831	0.359	27.679	27.526	27.885	-0.15195					11	8	2	0	0	0	0.024541	1	1566	1566		16.717	0.71061	1	64061			91285	18895	63323	63428	101979	101979					-0.07549240775733779
YSEQSRWFE	9	Unmodified	_YSEQSRWFE_					0	0	0		NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	411.184127	1230.53055	-0.36244	-0.00014903	-2.6511	-0.0010901	-3.0135	-0.0012391	411.1828897114313	28.052	0.32853	27.807	27.593	27.921	-0.24524	0.075779	0.00036715	NaN	11.636	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53646			91286	18895	63323	63428							-0.07549240775733779
YSEQSRWFE	9	Unmodified	_YSEQSRWFE_					0	0	0		NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	NUFIP2|p.K269Sfs*11|1|0.24|ENSG00000108256|chr17:29287180-29287190|GATTTCCCTTT/-|frameshift_variant	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		3	411.184127	1230.53055	-0.61774	-0.000254	-2.8765	-0.0011828	-3.4942	-0.0014368	411.182862796635	27.876	0.31727	27.707	27.57	27.887	-0.16816	-0.023844	8.9076E-05	NaN	11.636	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85327			91287	18895	63323	63428							-0.07549240775733779
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.2586669921875	2	545.258579	1088.50261	-0.42072	-0.0002294	0.44064	0.00024026	0.019915	1.0859E-05	545.2586646851911	61.125	1.4165	60.919	60.254	61.67	-0.20599					108	34	5	0	0	0	0.03849	4	6816	6806;6816;6827;6839		134.81	28.396	1	7245500			91288	2354	63324	63429	101980;101981;101982;101983	101981					-0.03810563755791918
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	545.2583618164062	2	545.258579	1088.50261	-1.0755	-0.00058643	1.006	0.00054851	-0.069545	-3.792E-05	545.259005641427	61.008	1.252	60.832	60.403	61.655	-0.1761					101	30	5	0	0	0	0.067814	3	6821	6810;6821;6833		122.18	33.273	1	6942700			91289	2354	63324	63429	101984;101985;101986	101985					-0.03810563755791918
YSESSQLLY	9	Unmodified	_YSESSQLLY_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.2583618164062	2	545.258579	1088.50261	-1.1851	-0.00064616	0.97939	0.00053402	-0.20567	-0.00011214	545.2589999201597	61.18	1.4153	60.926	60.294	61.71	-0.25373					106	34	5	0	0	0	0.057894	2	6817	6817;6828		125.81	37.171	1	6782000			91290	2354	63324	63429	101987;101988	101987					-0.03810563755791918
YSFFRRCWDYH	11	Unmodified	_YSFFRRCWDYH_					0	0	0		ENST00000308982.11_1_3:128631468-128631576:+|nuORF	ENST00000308982.11_1_3:128631468-128631576:+|nuORF	ENST00000308982.11_1_3:128631468-128631576:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	526.7465209960938	3	527.234827	1578.68265	-1.1404	-0.00060128	0.047521	2.5055E-05	-1.0929	-0.00057623	527.2349638798623	31.754	0.56105	31.754	31.428	31.989	0					29	13	3	0	0	0	0.024876	1	2099	2099		9.2118	6.1858	1	155800			91291	12037	63325	63430	101989	101989					-0.08354163299782158
YSGKVEPSL	9	Unmodified	_YSGKVEPSL_					0	0	0			REV__ENST00000376062.6_1_20:30252428-30253052:-|nuORF	REV__ENST00000376062.6_1_20:30252428-30253052:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	490.2586975097656	2	490.258382	978.502212	-0.12543	-6.1494E-05	-0.7869	-0.00038578	-0.91233	-0.00044728	490.2580004323879	104.99	1.7117	104.99	104.38	106.1	-0.0016022					99	54	2	0	0	0	0.94779	1	13433	13433		29.17	0.020503	1	7056700	+		91292	31348	63326	63431	101990	101990					0.012100613149868877
YSGVGITEKV	10	Unmodified	_YSGVGITEKV_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.8132934570312	2	526.784764	1051.55498	0.42514	0.00022396	0.9099	0.00047932	1.335	0.00070328	526.7853419465634	85.652	0.67842	85.515	85.284	85.962	-0.13753					27	15	3	0	0	0	0.03519	1	10384	10384		10.265	3.0719	1	238350	+		91293	22369	63327	63432	101991	101991					0.03126019377805278
YSGVGITEKV	10	Unmodified	_YSGVGITEKV_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.784764	1051.55498	0.13114	6.9084E-05	-0.079026	-4.163E-05	0.052118	2.7455E-05	526.7848039195151	85.704	0.67035	85.704	85.414	86.085	0	0.05467	-0.00078089	NaN	10.265	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548750	+		91294	22369	63327	63432							0.03126019377805278
YSGVGITEKV	10	Unmodified	_YSGVGITEKV_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	526.784764	1051.55498	-0.50495	-0.000266	0.60677	0.00031964	0.10182	5.3639E-05	526.7852055523015	85.742	0.88041	85.685	85.313	86.194	-0.05761	0.034746	-5.8352E-05	NaN	10.265	33	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334820	+		91295	22369	63327	63432							0.03126019377805278
YSGVGITEKV	10	Unmodified	_YSGVGITEKV_					0	0	0			REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	REV__RPS6KA1|p.E431Lfs*46|1|0.2|ENSG00000117676|chr1:26560796-26560797|-/CT|frameshift_variant	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	526.784764	1051.55498	-0.64126	-0.00033781	1.3917	0.00073313	0.75046	0.00039533	526.7858039239632	85.672	0.61973	85.695	85.367	85.987	0.023674	0.045632	0.00076864	NaN	10.265	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346700	+		91296	22369	63327	63432							0.03126019377805278
YSHHSGLEY	9	Unmodified	_YSHHSGLEY_					0	0	0		nc|ENSG00000105971|P51636-3|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENSG00000105971|ENST00000222693|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7877807617188	2	546.740888	1091.46722	-0.81963	-0.00044812	1.4046	0.00076797	0.585	0.00031984	546.7413099228175	29.79	0.67405	29.545	29.229	29.903	-0.24524					32	15	3	0	0	0	0.024487	1	1850	1850		40.573	4.9543	1	360880			91297	18151	63328	63433	101992	101992					-0.07485181492961601
YSIHSTAR	8	Unmodified	_YSIHSTAR_					0	0	0		ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	ENSG00000101307|ENST00000381605|SIRPB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.7386474609375	2	467.740691	933.466829	-1.2142	-0.00056792	-3.5079	-0.0016408	-4.7221	-0.0022087	467.7389164460177	26.143	2.4161	25.98	25.457	27.873	-0.16331					129	61	4	0	0	0	0.91956	1	1327	1327		49.442	8.8689	1	5217800			91298	2308	63329	63434	101993	101993					-0.0025655642215269836
YSIKQTAVR	9	Unmodified	_YSIKQTAVR_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.248291015625	2	533.306198	1064.59784	-0.453	-0.00024159	-0.30543	-0.00016289	-0.75843	-0.00040447	533.305802255202	49.478	0.90511	49.198	48.861	49.766	-0.27977					55	23	3	0	0	0	0.024288	1	4963	4963		52.937	0	1	1268100	+		91299	25736	63330	63435	101994	101994					0.06812834225866027
YSIMIVVI	8	Unmodified	_YSIMIVVI_					0	0	0			REV__ENSG00000163162|ENST00000295317|RNF149	REV__ENSG00000163162|ENST00000295317|RNF149	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	469.76904296875	2	469.274989	936.535426	0.30298	0.00014218	3.3684	0.0015807	3.6714	0.0017229	469.27652761138694	48.322	0.89865	48.389	48.007	48.906	0.066799					83	24	5	0	0	0	0.027866	1	4820	4820		50.025	5.4935	1	4678900	+		91300	25542	63331	63436	101995	101995					0.06461971833357438
YSIQAGQFF	9	Unmodified	_YSIQAGQFF_					0	0	0			REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|48|1|anti-sense	REV__MER11C_dup833|chr18:49553257-49554344:-|5.559552681668252|0.044225710385245|6.97|459.0|48|1|anti-sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.3088989257812	2	530.758549	1059.50255	-0.64398	-0.0003418	-2.2513	-0.0011949	-2.8953	-0.0015367	530.7568359863269	38.275	0.62226	38.057	37.828	38.45	-0.21848					48	17	4	0	0	0	0.024457	1	3113	3113		21.96	5.4867	1	1846100	+		91301	36364	63332	63437	101996	101996					-0.024825189651664914
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	555.290283203125	2	555.290548	1108.56654	-0.33445	-0.00018572	-0.15657	-8.6943E-05	-0.49102	-0.00027266	555.2904414661259	60.87	1.2554	60.664	60.254	61.509	-0.20599					83	30	4	0	0	0	0.023452	6	6774	6764;6774;6785;6798;6811;6823		146.79	39.778	1	14834000			91302	2103	63333	63438	101997;101998;101999;102000;102001;102002	101998					0.01660261191796053
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	555.2903442382812	2	555.290548	1108.56654	-0.97068	-0.00053901	0.47322	0.00026277	-0.49746	-0.00027624	555.2908197347265	60.621	1.2975	60.445	60.116	61.413	-0.1761					83	31	4	0	0	0	0.038547	5	6767	6742;6754;6767;6780;6791		134.77	38.098	1	15610000			91303	2103	63333	63438	102003;102004;102005;102006;102007	102005					0.01660261191796053
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	555.2900390625	2	555.290548	1108.56654	-0.93823	-0.00052099	0.34792	0.0001932	-0.59031	-0.00032779	555.2907471235181	60.894	1.2143	60.641	60.253	61.467	-0.25373					82	29	4	0	0	0	0.023452	6	6779	6755;6767;6779;6793;6805;6818		146.79	65.138	1	15576000			91304	2103	63333	63438	102008;102009;102010;102011;102012;102013	102010					0.01660261191796053
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	555.290548	1108.56654	-0.11171	-6.203E-05	-2.5816	-0.0014336	-2.6933	-0.0014956	555.289891419125	60.253	0.44279	60.253	60.066	60.509	0	-0.17478	-0.0030579	NaN	146.79	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218050			91305	2103	63333	63438							0.01660261191796053
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	555.290548	1108.56654	-0.79071	-0.00043907	-2.7498	-0.001527	-3.5405	-0.001966	555.2900362098054	60.49	0.52498	60.277	60.079	60.604	-0.21339	-0.15102	-0.0032447	NaN	146.79	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181500			91306	2103	63333	63438							0.01660261191796053
YSIRGQLSW	9	Unmodified	_YSIRGQLSW_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	555.290548	1108.56654	-1.665	-0.00092453	-0.34316	-0.00019055	-2.0081	-0.0011151	555.2907498479889	60.209	0.67289	60.287	60.011	60.684	0.078888	-0.14046	-0.00057187	NaN	146.79	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180880			91307	2103	63333	63438							0.01660261191796053
YSISAPLFAVG	11	Unmodified	_YSISAPLFAVG_					0	0	0			REV__ENSG00000165646|ENST00000644641|SLC18A2	REV__ENSG00000165646|ENST00000644641|SLC18A2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	563.7869873046875	2	562.802957	1123.59136	-0.11287	-6.3526E-05	0.14406	8.1078E-05	0.031188	1.7552E-05	562.8036119093532	90.623	0.78733	90.634	90.08	90.867	0.011276					27	18	2	0	0	0	0.024752	1	11372	11372		49.442	3.4896	1	75896	+		91308	25912	63334	63439	102014	102014					0.034508962744894234
YSIVSLALI	9	Unmodified	_YSIVSLALI_					0	0	0			REV__ENSG00000132164|ENST00000254488|SLC6A11	REV__ENSG00000132164|ENST00000254488|SLC6A11	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	489.7934875488281	2	489.797143	977.579734	-0.37763	-0.00018496	-2.5268	-0.0012376	-2.9044	-0.0014226	489.7957898782809	22.181	0.85308	22.106	21.841	22.694	-0.075296					48	17	4	0	0	0	0.80658	1	743	743		38.806	0	1	1050400	+		91309	23257	63335	63440	102015	102015					0.09004699251181592
YSKAIRYM	8	Unmodified	_YSKAIRYM_					0	0	0			REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	REV__DOCK8|p.E1911Mfs*10|1|0.22|ENSG00000107099|chr9:446516-446517|-/CA|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	516.2696533203125	2	516.27077	1030.52699	-1.236	-0.00063809	-0.8255	-0.00042618	-2.0615	-0.0010643	516.2696016634007	50.955	1.5503	51.042	50.06	51.61	0.087006					106	44	5	0	0	0	0.81662	1	5291	5291		57.811	6.4758	1	7243800	+		91310	19700	63336	63441	102016	102016					0.012944179167106995
YSKALSAYQ	9	Unmodified	_YSKALSAYQ_					0	0	0		nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;ENSG00000183878|ENST00000545955|UTY;ENST00000478900.5_1_Y:15481200-15591401:-|nuORF;ENST00000474365.1_1_Y:15505723-15591217:-|nuORF	nc|ENSG00000183878|O14607-2|UTY	nc|ENSG00000183878|O14607-2|UTY	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	515.7622680664062	2	515.763832	1029.51311	-0.38415	-0.00019813	-0.12829	-6.6166E-05	-0.51244	-0.0002643	515.7637555312174	42.288	1.2621	42.056	41.583	42.845	-0.23186					82	33	4	0	0	0	0.17845	1	3816	3816		93.143	18.1	1	9553700			91311	9290	63337	63442	102017	102017					-0.00046536310719602625
YSKAVHQVL	9	Unmodified	_YSKAVHQVL_					0	0	0		nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000160145|O60229-2|KALRN	nc|ENSG00000160145|O60229|KALRN	nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7960815429688	2	522.795466	1043.57638	-0.39154	-0.0002047	3.0131	0.0015752	2.6216	0.0013706	522.7969513620492	39.075	2.5388	38.851	37.759	40.298	-0.22311					131	68	2	0	0	0	0.72875	1	3281	3281		44.117	3.3386	1	2528800			91312	6785	63338	63443	102018	102018					0.056334491971938405
YSKLRTLLL	9	Unmodified	_YSKLRTLLL_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	553.8306274414062	2	553.850242	1105.68593	-0.21039	-0.00011653	-3.9941	-0.0022121	-4.2045	-0.0023286	553.847608720172	89.105	0.75544	88.977	88.744	89.5	-0.12774					23	17	2	0	0	0	0.024405	1	10953	10953		27.882	0	1	65647			91313	8433	63339	63444	102019	102019					0.13731454816525002
YSKPGSWGSF	10	Unmodified	_YSKPGSWGSF_					0	0	0		ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	559.2180786132812	2	558.261456	1114.50836	-1.2026	-0.00067136	-2.8965	-0.001617	-4.0991	-0.0022884	558.2598435667699	44.266	0.42482	44.046	43.788	44.212	-0.21939					20	11	2	0	0	0	0.03519	1	4069	4069		79.451	15.244	1	303790			91314	10332	63340	63445	102020	102020					-0.04431420453465762
YSLDAEALY	9	Unmodified	_YSLDAEALY_					0	0	0			REV__nc|ENSG00000185664|P40967-3|PMEL	REV__nc|ENSG00000185664|P40967-3|PMEL	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7476806640625	2	522.747847	1043.48114	0.62882	0.00032871	-0.50714	-0.00026511	0.12167	6.3605E-05	522.7474507832471	74.465	1.6535	74.282	73.961	75.615	-0.18278					83	39	3	0	0	0	0.78069	1	8768	8768		40.573	0	1	2180700	+		91315	27782	63341	63446	102021	102021					-0.03885948784522952
YSLKKDRLVS	10	Unmodified	_YSLKKDRLVS_					0	0	0		ENSG00000243729|ENST00000641768|OR5V1	ENSG00000243729|ENST00000641768|OR5V1	ENSG00000243729|ENST00000641768|OR5V1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	403.57208251953125	3	403.571434	1207.69247	0.54672	0.00022064	0.42168	0.00017018	0.96839	0.00039082	403.57158804731324	42.75	1.6081	42.517	42.155	43.763	-0.23262					120	42	4	0	0	0	1.0275	1	3856	3856		42.338	0.91146	1	5880100			91316	10813	63342	63447	102022	102022					0.09693347977213307
YSLKRSPMN	9	Unmodified	_YSLKRSPMN_					0	0	0		ENST00000343979.5_1_19:12298828-12299077:+|nuORF	ENST00000343979.5_1_19:12298828-12299077:+|nuORF	ENST00000343979.5_1_19:12298828-12299077:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	548.311279296875	2	548.284408	1094.55426	-0.94421	-0.00051769	-2.3751	-0.0013022	-3.3193	-0.0018199	548.2826079834698	56.298	0.14145	56.142	56.031	56.173	-0.15601					5	3	2	0	0	0	0.024495	1	6235	6235		34.173	3.6689	1	78970			91317	12541	63343	63448	102023	102023					0.010769014571224034
YSLKVLLSY	9	Unmodified	_YSLKVLLSY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	543.3131713867188	2	543.3157	1084.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.059	1	73.794	73.294	74.294	-0.26479								0	0	0	0.021002	1	8734	8734		129.42	17.01	1				91318	3022	63344	63449	102024	102024					0.07792370796960313
YSLKVLLSY	9	Unmodified	_YSLKVLLSY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	543.3158569335938	2	543.3157	1084.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.12	1	73.855	73.355	74.355	-0.26479								0	0	0	0.0099265	1	8740	8740		167.23	9.1542	1				91319	3022	63344	63449	102025	102025					0.07792370796960313
YSLKVLLSY	9	Unmodified	_YSLKVLLSY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MSMS	OPSCC_40_ClassI_Rep-2	5	543.3153686523438	2	543.3157	1084.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.194	1	73.929	73.429	74.429	-0.26479								0	0	0	0.014459	1	8750	8750		141.52	5.2523	1				91320	3022	63344	63449	102026	102026					0.07792370796960313
YSLKVLLSY	9	Unmodified	_YSLKVLLSY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	543.3165893554688	2	543.3157	1084.61685	-0.48119	-0.00026144	1.3421	0.00072917	0.86088	0.00046773	543.3160145081494	73.894	0.69708	73.704	73.519	74.216	-0.19026					29	18	2	0	0	0	0.01388	3	8693	8693;8702;8709		180.87	31.883	1	1689700			91321	3022	63344	63449	102027;102028;102029	102027					0.07792370796960313
YSLKVLLSY	9	Unmodified	_YSLKVLLSY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	543.3157	1084.61685	-0.66653	-0.00036214	-1.4448	-0.00078498	-2.1113	-0.0011471	543.3146454798215	73.443	0.36236	73.443	73.254	73.617	0	-0.1036	-0.0010765	NaN	180.87	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462450			91322	3022	63344	63449							0.07792370796960313
YSLKVLLSY	9	Unmodified	_YSLKVLLSY_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	543.3157	1084.61685	-1.051	-0.00057102	-1.6118	-0.0008757	-2.6628	-0.0014467	543.3149498160678	73.483	0.45851	73.492	73.255	73.713	0.0096512	-0.05415	-0.0012579	NaN	180.87	16	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686310			91323	3022	63344	63449							0.07792370796960313
YSLKYTKY	8	Unmodified	_YSLKYTKY_					0	0	0		ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	533.2568359375	2	533.2844	1064.55425	-0.38502	-0.00020532	-3.3437	-0.0017831	-3.7287	-0.0019885	533.2825992884977	40.829	0.35815	40.829	40.692	41.051	0					14	9	2	0	0	0	0.027866	1	3605	3605		50.025	10.772	1	148350			91324	9189	63345	63450	102030	102030					0.024552247287601858
YSLLLGPVY	9	Unmodified	_YSLLLGPVY_					0	0	0			REV__ENSG00000141699|ENST00000309428|RETREG3	REV__ENSG00000141699|ENST00000309428|RETREG3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.789306640625	2	512.789318	1023.56408	0.16943	8.6883E-05	-0.45179	-0.00023167	-0.28236	-0.00014479	512.7890513287634	81.345	1.3878	81.152	80.8	82.188	-0.19333					97	32	5	0	0	0	0.33184	1	9816	9816		71.378	11.084	1	6681800	+		91325	24118	63346	63451	102031	102031					0.053244127341372405
YSLNGRQP	8	Unmodified	_YSLNGRQP_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	467.7386169433594	2	467.740691	933.466829	-0.57376	-0.00026837	-3.9787	-0.001861	-4.5524	-0.0021294	467.73869025984726	26.326	1.6655	26.09	25.72	27.385	-0.23603					66	42	2	0	0	0	0.845	1	1381	1381		55.504	2.1528	1	3989000			91326	4506	63347	63452	102032	102032					-0.0025655642215269836
YSLNGRQP	8	Unmodified	_YSLNGRQP_					0	0	0		nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	nc|ENSG00000131196|O95644-6|NFATC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	467.738525390625	2	467.740691	933.466829	-1.2142	-0.00056792	-3.5079	-0.0016408	-4.7221	-0.0022087	467.7389164460177	26.143	2.4161	25.98	25.457	27.873	-0.16331					129	61	4	0	0	0	0.94517	1	1303	1303		45.952	1.8352	1	5217800			91327	4506	63347	63452	102033	102033					-0.0025655642215269836
YSLPRNIHI	9	Unmodified	_YSLPRNIHI_					0	0	0		ENSG00000182795|ENST00000359470|C1orf116	ENSG00000182795|ENST00000359470|C1orf116	ENSG00000182795|ENST00000359470|C1orf116	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	557.3170776367188	2	556.81419	1111.61383	-0.18519	-0.00010312	0.77205	0.00042989	0.58686	0.00032677	557.3167727157486	21.499	1.1117	21.57	21.106	22.218	0.071487					71	22	5	0	0	0	0.80658	1	650	650		38.806	0.99462	1	552860			91328	9166	63348	63453	102034	102034					0.062485404627977914
YSLQIYAR	8	Unmodified	_YSLQIYAR_					0	0	0		nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	nc|ENSG00000151779|A2RRP1-2|NBAS	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	507.28515625	2	507.274367	1012.53418	-1.3171	-0.00066813	-2.5215	-0.0012791	-3.8386	-0.0019472	507.272967315631	30.657	0.4535	30.657	30.426	30.879	0					32	10	4	0	0	0	0.027866	1	2013	2013		31.955	0	1	665210			91329	6229	63349	63454	102035	102035					0.028414737887828778
YSLSELSVLQ	10	Unmodified	_YSLSELSVLQ_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	569.8001098632812	2	569.803154	1137.59175	-1.8711	-0.0010662	-3.9964	-0.0022771	-5.8675	-0.0033433	569.8007631732037	49.447	0.96228	49.521	49.242	50.204	0.074196					79	26	4	0	0	0	0.85955	1	5040	5040		56.721	1.9447	1	3203600			91330	4386	63350	63455	102036	102036					0.028462712037253368
YSLTRESSQH	10	Unmodified	_YSLTRESSQH_					0	0	0			REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	402.81134033203125	3	403.194915	1206.56291	-0.72408	-0.00029195	-4.4669	-0.001801	-5.191	-0.002093	403.19295874981015	28.758	0.50614	28.607	28.361	28.867	-0.15111					16	11	2	0	0	0	0.03519	1	1666	1666		39.873	0	1	178190	+		91331	27918	63351	63456	102037	102037					-0.03210453372707889
YSMFLCVHVK	10	Unmodified	_YSMFLCVHVK_					0	0	0		nc|ENSG00000112494|Q86WB7-2|UNC93A;ENSG00000112494|ENST00000230256|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	nc|ENSG00000112494|Q86WB7-2|UNC93A	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.9155578613281	3	409.5402	1225.59877	0.68256	0.00027954	-0.61188	-0.00025059	0.070678	2.8946E-05	409.874033315144	32.271	0.39299	32.079	31.942	32.335	-0.19261					15	8	2	0	0	0	0.03519	1	2209	2209		26.063	10.143	1	26872			91332	3215	63352	63457	102038	102038					-0.005004107210652364
YSMLPLPL	8	Unmodified	_YSMLPLPL_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	467.7255554199219	2	467.259339	932.504126	-1.067	-0.00049857	-3.829	-0.0017891	-4.896	-0.0022877	467.2575838468236	43.579	0.34859	43.36	43.176	43.525	-0.21939					16	9	2	0	0	0	0.027866	1	4006	4006		28.254	0	1	356490			91333	6497	63353	63458	102039	102039					0.03517398799260718
YSMLPLPL	8	Unmodified	_YSMLPLPL_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	467.259339	932.504126	-0.13962	-6.5239E-05	-3.9313	-0.0018369	-4.0709	-0.0019022	467.2575050904003	43.417	0.35398	43.305	43.109	43.463	-0.11253	-0.04702	-8.76E-05	NaN	8.2313	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445020			91334	6497	63353	63458							0.03517398799260718
YSMPVIPQ	8	Unmodified	_YSMPVIPQ_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	467.7389221191406	2	467.738771	933.462989	-0.14765	-6.9063E-05	-0.37585	-0.0001758	-0.5235	-0.00024486	467.73845371690464	26.103	2.2243	25.935	25.544	27.768	-0.16816					126	56	4	0	0	0	0.93274	1	1331	1331		47.916	1.9636	1	4720200			91335	950	63354	63459	102040	102040					-0.006403622402103792
YSMRLAPR	8	Unmodified	_YSMRLAPR_					0	0	0			REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	497.2680969238281	2	497.268561	992.52257	-0.95259	-0.0004737	0.14727	7.3233E-05	-0.80532	-0.00040046	497.26859640888404	35.147	1.0325	35.125	34.435	35.468	-0.021767					91	26	4	0	0	0	0.94517	1	2671	2671		45.952	0	1	13428000	+		91336	35207	63355	63460	102041	102041					0.026009534938225443
YSMRLAPR	8	Unmodified	_YSMRLAPR_					0	0	0			REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2682800292969	2	497.268561	992.52257	-0.33806	-0.00016811	-0.537	-0.00026703	-0.87506	-0.00043514	497.2682640817893	35.201	1.1879	35.245	34.512	35.699	0.04406					114	30	5	0	0	0	0.87148	1	2698	2698		53.351	2.016	1	12692000	+		91337	35207	63355	63460	102042	102042					0.026009534938225443
YSMRLAPR	8	Unmodified	_YSMRLAPR_					0	0	0			REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	REV__ENST00000562846.1_1_16:67595834-67596182:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	497.2684631347656	2	497.268561	992.52257	-0.35959	-0.00017881	-0.29125	-0.00014483	-0.65083	-0.00032364	497.26837861192877	36.109	3.0502	36.147	35.652	38.702	0.038044					198	83	4	0	0	0	0.87148	1	2747	2747		53.351	3.3269	1	12565000	+		91338	35207	63355	63460	102043	102043					0.026009534938225443
YSNAMEMSAME	11	Oxidation (M)	_YSNAMEMSAM(Oxidation (M))E_		YSNAMEMSAM(1)E		YSNAM(-42)EM(-42)SAM(42)E	0	0	1			REV__ENSG00000103534|ENST00000542583|TMC5	REV__ENSG00000103534|ENST00000542583|TMC5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	640.218017578125	2	640.235606	1278.45666	-1.4487	-0.00092749	1.7451	0.0011173	0.29645	0.0001898	640.2371927594719	72.205	0.20119	71.93	71.788	71.989	-0.27509					8	4	3	0	0	0	0.024044	1	8432	8432		87.696	21.267	3	170260	+		91339	21393	63356	63461	102044	102044		653			-0.17143036316247162
YSNCHANCS	9	Unmodified	_YSNCHANCS_					0	0	0		ENST00000294383.6_1_1:55607291-55608433:-|nuORF	ENST00000294383.6_1_1:55607291-55608433:-|nuORF	ENST00000294383.6_1_1:55607291-55608433:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	499.73797607421875	2	499.676376	997.3382	-0.4247	-0.00021221	0.68205	0.0003408	0.25734	0.00012859	499.6764479013708	33.641	0.19024	33.441	33.365	33.555	-0.20019					6	4	2	0	0	0	0.024541	1	2427	2427		34.173	7.3764	1	55157			91340	11814	63357	63462	102045	102045					-0.1605760271905865
YSPAQSQATIY	11	Unmodified	_YSPAQSQATIY_					0	0	0		ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	614.7953491210938	2	614.79586	1227.57717	-1.4379	-0.000884	1.0611	0.00065238	-0.37673	-0.00023161	614.7963959472471	54.376	0.85665	54.239	53.99	54.847	-0.13617					64	23	4	0	0	0	0.44817	1	5780	5780		79.713	2.395	1	2011100			91341	9049	63358	63463	102046	102046					-0.027518009444293057
YSPAQSQATIY	11	Unmodified	_YSPAQSQATIY_					0	0	0		ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	614.79586	1227.57717	-0.48883	-0.00030053	0.089891	5.5264E-05	-0.39894	-0.00024527	614.7957736740107	54.51	0.69208	54.265	54.041	54.733	-0.2453	0.013531	-5.7678E-05	NaN	79.713	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2100200			91342	9049	63358	63463							-0.027518009444293057
YSPAQSQATIY	11	Unmodified	_YSPAQSQATIY_					0	0	0		ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	ENSG00000181555|ENST00000409792|SETD2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	614.79586	1227.57717	0.40413	0.00024846	-0.65727	-0.00040409	-0.25313	-0.00015563	614.7953320648281	54.455	0.8811	54.249	53.913	54.794	-0.20613	-0.0020203	-0.00097638	NaN	79.713	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1881100			91343	9049	63358	63463							-0.027518009444293057
YSPERSKSY	9	Unmodified	_YSPERSKSY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;ENST00000551406.5_1_12:42720030-42768950:+|nuORF	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	558.782470703125	2	558.769645	1115.52474	0.16199	9.0515E-05	-1.8329	-0.0010242	-1.6709	-0.00093367	558.7685904311023	36.247	0.52921	36.03	35.879	36.408	-0.21661					18	13	2	0	0	0	0.02435	1	2869	2869		42.396	1.618	1	112010			91344	4776	63359	63464	102047	102047					-0.028403392873769917
YSPERSKSY	9	Unmodified	_YSPERSKSY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;ENST00000551406.5_1_12:42720030-42768950:+|nuORF	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	558.769645	1115.52474	-1.0385	-0.00058026	0.14686	8.2063E-05	-0.8916	-0.0004982	559.2708910002666	36.113	0.4474	36.113	35.886	36.334	0	0.10797	0.00037112	NaN	42.396	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271570			91345	4776	63359	63464							-0.028403392873769917
YSPERSKSY	9	Unmodified	_YSPERSKSY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;ENST00000551406.5_1_12:42720030-42768950:+|nuORF	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	558.769645	1115.52474	-1.3915	-0.00077751	0.34743	0.00019413	-1.044	-0.00058337	558.7700550853483	35.967	0.30429	35.925	35.763	36.067	-0.042454	-0.079737	0.00059526	NaN	42.396	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198000			91346	4776	63359	63464							-0.028403392873769917
YSPERSKSY	9	Unmodified	_YSPERSKSY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;ENST00000551406.5_1_12:42720030-42768950:+|nuORF	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	558.769645	1115.52474	-0.42442	-0.00023715	-0.72015	-0.0004024	-1.1446	-0.00063955	558.7696037561958	35.992	0.3788	36.03	35.855	36.234	0.038044	0.025392	-0.00059781	NaN	42.396	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165180			91347	4776	63359	63464							-0.028403392873769917
YSPERSKSY	9	Unmodified	_YSPERSKSY_					0	0	0		nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;ENST00000551406.5_1_12:42720030-42768950:+|nuORF	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	558.769645	1115.52474	0.75227	0.00042035	-0.55022	-0.00030745	0.20205	0.0001129	558.7691941211384	36.124	0.31702	35.926	35.776	36.093	-0.19829	-0.078991	-0.00040791	NaN	42.396	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115640			91348	4776	63359	63464							-0.028403392873769917
YSPGESFFTVF	11	Unmodified	_YSPGESFFTVF_					0	0	0		ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8;ENST00000473262.5_1_3:124837626-124909342:-|nuORF	ENSG00000221955|ENST00000469902|SLC12A8	ENSG00000221955|ENST00000469902|SLC12A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	640.218505859375	2	640.795329	1279.5761	0.031424	2.0136E-05	2.6433	0.0016938	2.6747	0.0017139	640.79691861627	72.718	0.38242	72.454	72.213	72.595	-0.26479					19	8	3	0	0	0	0.02373	1	8507	8507		95.815	28.853	1	176260			91349	10627	63360	63465	102048	102048					-0.05250015313345102
YSPGESFFTVF	11	Unmodified	_YSPGESFFTVF_					0	0	0		ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8;ENST00000473262.5_1_3:124837626-124909342:-|nuORF	ENSG00000221955|ENST00000469902|SLC12A8	ENSG00000221955|ENST00000469902|SLC12A8	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	640.2179565429688	2	640.795329	1279.5761	-0.90857	-0.00058221	3.1173	0.0019975	2.2087	0.0014153	640.7973637743281	72.514	0.46213	72.316	72.077	72.539	-0.19811					17	10	2	0	0	0	0.021883	1	8459	8459		118.74	41.425	1	122100			91350	10627	63360	63465	102049	102049					-0.05250015313345102
YSPGESFFTVF	11	Unmodified	_YSPGESFFTVF_					0	0	0		ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8;ENST00000473262.5_1_3:124837626-124909342:-|nuORF	ENSG00000221955|ENST00000469902|SLC12A8	ENSG00000221955|ENST00000469902|SLC12A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	640.795329	1279.5761	1.0319	0.00066123	2.188	0.001402	3.2199	0.0020633	640.7964839390032	72.4	0.52547	72.4	72.131	72.656	0	-0.022101	0.00010846	NaN	118.74	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244910			91351	10627	63360	63465							-0.05250015313345102
YSPGESFFTVF	11	Unmodified	_YSPGESFFTVF_					0	0	0		ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8;ENST00000473262.5_1_3:124837626-124909342:-|nuORF	ENSG00000221955|ENST00000469902|SLC12A8	ENSG00000221955|ENST00000469902|SLC12A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	640.795329	1279.5761	1.6594	0.0010633	1.0439	0.00066892	2.7033	0.0017323	640.7959625219797	72.734	0.94063	72.452	72.139	73.08	-0.28123	0.03082	-0.0013578	NaN	118.74	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247890			91352	10627	63360	63465							-0.05250015313345102
YSPGESFFTVF	11	Unmodified	_YSPGESFFTVF_					0	0	0		ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8;ENST00000473262.5_1_3:124837626-124909342:-|nuORF	ENSG00000221955|ENST00000469902|SLC12A8	ENSG00000221955|ENST00000469902|SLC12A8	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	640.795329	1279.5761	0.71858	0.00046046	1.7995	0.0011531	2.518	0.0016136	640.7964490220522	72.51	0.60959	72.519	72.25	72.859	0.0097733	0.097695	-0.00038947	NaN	118.74	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228420			91353	10627	63360	63465							-0.05250015313345102
YSPGPTEDDW	10	Unmodified	_YSPGPTEDDW_					0	0	0			REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	582.73876953125	2	583.735468	1165.45638	-1.3147	-0.00076742	-1.5536	-0.0009069	-2.8683	-0.0016743	584.2373536074053	66.617	0.33233	66.393	66.145	66.478	-0.22374					13	8	2	0	0	0	0.03519	1	7639	7639		37.159	9.0776	1	404620	+		91354	28321	63361	63466	102050	102050					-0.11972628657940732
YSPHHHWPLE	10	Unmodified	_YSPHHHWPLE_					0	0	0		ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENST00000470961.1_1_3:101405187-101405544:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	434.4977722167969	3	434.871995	1301.59415	-0.10598	-4.6087E-05	1.5119	0.00065748	1.4059	0.00061139	435.20716821974196	40.093	0.23094	39.868	39.734	39.965	-0.225					6	5	2	0	0	0	0.03519	1	3436	3436		54.722	36.889	1	31030			91355	14945	63362	63467	102051	102051					-0.04457835547941613
YSPHLNKQIT	10	Unmodified	_YSPHLNKQIT_					0	0	0			REV__THRB|p.T226Sfs*35|1|0.67|ENSG00000151090|chr3:24143563-24143564|-/GACAGTTTTGATGA|frameshift_variant	REV__THRB|p.T226Sfs*35|1|0.67|ENSG00000151090|chr3:24143563-24143564|-/GACAGTTTTGATGA|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	400.9033508300781	3	400.8839	1199.62987	1.7698	0.00070946	1.8523	0.00074256	3.6221	0.001452	400.884756865007	51.062	0.18804	51.149	51.039	51.227	0.087009					7	4	2	0	0	0	0.03519	1	5327	5327		35.178	18.648	1	23902	+		91356	24749	63363	63468	102052	102052					0.03804201909042604
YSPLRLTVT	9	Unmodified	_YSPLRLTVT_					0	0	0			REV__nc|ENSG00000241644|O95050-2|INMT	REV__nc|ENSG00000241644|O95050-2|INMT	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	525.3037719726562	2	525.303124	1048.5917	-0.14172	-7.4444E-05	-0.31153	-0.00016365	-0.45325	-0.00023809	525.3028768859093	63.908	1.1946	63.657	63.084	64.278	-0.25141					95	32	4	0	0	0	0.15388	1	7443	7443		98.582	2.7668	1	5748100	+		91357	28970	63364	63469	102053	102053					0.06934315994362805
YSQADALKY	9	Unmodified	_YSQADALKY_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;ENST00000586714.1_1_17:40854552-40854989:-|nuORF;ENST00000492143.5_1_7:148504740-148513906:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000106462|Q15910-4|EZH2;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000431167.1_1_21:36972032-36972302:-|nuORF	nc|ENSG00000106462|Q15910|EZH2;ENST00000431167.1_1_21:36972032-36972302:-|nuORF	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	529.7614135742188	2	529.761289	1057.50803	-0.97751	-0.00051784	0.55689	0.00029502	-0.42061	-0.00022282	529.761436623756	45.023	0.71589	44.924	44.472	45.188	-0.099445					46	18	3	0	0	0	0.012962	3	4242	4230;4242;4255		173.39	91.152	1	3983600			91358	2791;14182	63365	63470	102054;102055;102056	102055					-0.018428401733444844
YSQADALKY	9	Unmodified	_YSQADALKY_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;ENST00000586714.1_1_17:40854552-40854989:-|nuORF;ENST00000492143.5_1_7:148504740-148513906:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000106462|Q15910-4|EZH2;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000431167.1_1_21:36972032-36972302:-|nuORF	nc|ENSG00000106462|Q15910|EZH2;ENST00000431167.1_1_21:36972032-36972302:-|nuORF	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	529.7611694335938	2	529.761289	1057.50803	-0.62414	-0.00033064	-0.12433	-6.5863E-05	-0.74846	-0.00039651	529.7612175495082	45.259	1.0981	45.007	44.468	45.566	-0.25252					71	29	4	0	0	0	0.012962	3	4271	4246;4259;4271		186.41	98.656	1	4158800			91359	2791;14182	63365	63470	102057;102058;102059	102059					-0.018428401733444844
YSQADALKY	9	Unmodified	_YSQADALKY_					0	0	0		nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;ENST00000586714.1_1_17:40854552-40854989:-|nuORF;ENST00000492143.5_1_7:148504740-148513906:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000108799|Q92800-3|EZH1;nc|ENSG00000106462|Q15910-4|EZH2;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000431167.1_1_21:36972032-36972302:-|nuORF	nc|ENSG00000106462|Q15910|EZH2;ENST00000431167.1_1_21:36972032-36972302:-|nuORF	nc|ENSG00000106462|Q15910|EZH2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	529.7607421875	2	529.761289	1057.50803	-0.38178	-0.00020225	-0.049603	-2.6278E-05	-0.43138	-0.00022853	529.7611124221419	45.214	0.90184	45.003	44.514	45.416	-0.21109					54	24	4	0	0	0	0.01456	2	4260	4249;4260		186.41	87.781	1	4414500			91360	2791;14182	63365	63470	102060;102061	102061					-0.018428401733444844
YSQELSLLY	9	Unmodified	_YSQELSLLY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	558.2845458984375	2	558.284597	1114.55464	0.24116	0.00013464	0.89849	0.00050161	1.1397	0.00063625	558.2838840495988	78.55	1.0169	78.319	78.006	79.023	-0.23141					68	23	4	0	0	0	0.014013	2	9373	9373;9384		166.78	51.324	1	2158900			91361	10867	63366	63471	102062;102063	102062					0.0019459965797068435
YSQELSLLY	9	Unmodified	_YSQELSLLY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	558.2850341796875	2	558.284597	1114.55464	-0.14268	-7.9654E-05	-0.39906	-0.00022279	-0.54174	-0.00030244	558.2840911441349	78.443	1.0215	78.287	77.957	78.978	-0.15591					50	23	3	0	0	0	0.077175	3	9339	9339;9350;9362		118.74	27.966	1	2308800			91362	10867	63366	63471	102064;102065;102066	102064					0.0019459965797068435
YSQIQEQRI	9	Unmodified	_YSQIQEQRI_					0	0	0		ENSG00000164934|ENST00000612750|DCAF13;CEP135-DCAF13|1|fusion;DCAF13|p.S399C|1|0.19|ENSG00000164934|chr8:103441564-103441564|C/G|missense_variant	ENSG00000164934|ENST00000612750|DCAF13	ENSG00000164934|ENST00000612750|DCAF13	MSMS	OPSCC_40_ClassI_Rep-3	6	582.8021240234375	2	582.80402	1163.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.61	1	112.46	111.96	112.96	-0.14447								0	0	0	0.73798	1	13641	13641		12.207	0.69583	1				91363	7345	63367	63472	102067	102067					0.018233250123103062
YSQKAQNSW	9	Unmodified	_YSQKAQNSW_					0	0	0		ENST00000536689.5_1_19:10664629-10668377:-|nuORF;ENST00000537363.5_1_19:10664629-10670250:-|nuORF;ENSG00000129347|ENST00000312962|KRI1	ENST00000536689.5_1_19:10664629-10668377:-|nuORF	ENST00000536689.5_1_19:10664629-10668377:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	556.2633056640625	2	556.261988	1110.50942	-0.018185	-1.0116E-05	0.086476	4.8104E-05	0.068292	3.7988E-05	556.2618574512825	32.125	0.64629	31.888	31.611	32.258	-0.23667					22	14	2	0	0	0	0.20652	1	2197	2197		88.177	29.395	1	611980			91364	4343	63368	63473	102068	102068					-0.04141206084568694
YSQKAQNSW	9	Unmodified	_YSQKAQNSW_					0	0	0		ENST00000536689.5_1_19:10664629-10668377:-|nuORF;ENST00000537363.5_1_19:10664629-10670250:-|nuORF;ENSG00000129347|ENST00000312962|KRI1	ENST00000536689.5_1_19:10664629-10668377:-|nuORF	ENST00000536689.5_1_19:10664629-10668377:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	556.263427734375	2	556.261988	1110.50942	0.20394	0.00011345	0.4339	0.00024136	0.63784	0.00035481	556.2620033775192	32.086	0.81559	31.893	31.641	32.457	-0.19261					32	18	2	0	0	0	0.087768	1	2191	2191		114.86	32.618	1	476620			91365	4343	63368	63473	102069	102069					-0.04141206084568694
YSQWWNPI	8	Unmodified	_YSQWWNPI_					0	0	0			REV__nc|ENSG00000135503|P36896-2|ACVR1B;REV__nc|ENSG00000135503|P36896-4|ACVR1B	REV__nc|ENSG00000135503|P36896-4|ACVR1B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	547.8025512695312	2	547.258717	1092.50288	-0.63509	-0.00034756	0.70754	0.00038721	0.072454	3.9651E-05	547.7594343153545	30.924	0.24803	30.745	30.583	30.831	-0.17817					6	5	2	0	0	0	0.027866	1	1985	1985		33.516	0	1	67286	+		91366	36688;36690	63369	63474	102070	102070					-0.03967099245301142
YSRALYLAL	9	Unmodified	_YSRALYLAL_					0	0	0		RBBP8-TAF4B|1|fusion;ENSG00000141384|ENST00000269142|TAF4B;RIOK3-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	RBBP8-TAF4B|1|fusion	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.7772827148438	2	535.305667	1068.59678	-1.4457	-0.00077391	-3.1766	-0.0017005	-4.6223	-0.0024744	535.303804356099	46.183	0.79593	46.031	45.719	46.515	-0.15157					53	22	3	0	0	0	0.024374	1	4579	4579		49.442	12.282	1	2512200			91367	19033	63370	63475	102071	102071					0.06522619856968959
YSRAVWETG	9	Unmodified	_YSRAVWETG_					0	0	0		ENST00000224652.10_3_10:123502018-123502099:-|nuORF	ENST00000224652.10_3_10:123502018-123502099:-|nuORF	ENST00000224652.10_3_10:123502018-123502099:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	534.7772827148438	2	534.759081	1067.50361	-1.5595	-0.00083398	2.4228	0.0012956	0.86321	0.00046161	534.7616754435485	46.378	0.34888	46.227	46.062	46.411	-0.15156					12	9	2	0	0	0	0.024381	1	4579	4579		37.159	1.5408	1	332050			91368	11202	63371	63476	102072	102072					-0.027443045962627366
YSRHSIRF	8	Unmodified	_YSRHSIRF_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	533.248291015625	2	533.283057	1064.55156	-1.2154	-0.00064816	1.3514	0.00072065	0.13594	7.2496E-05	533.2831984986288	48.895	1.2014	48.615	48.039	49.24	-0.27977					47	32	2	0	0	0	0.027866	1	4963	4963		45.952	0	1	408900	+		91369	24823	63372	63477	102073	102073					0.021868141144750552
YSRLHLYI	8	Unmodified	_YSRLHLYI_					0	0	0			REV__ENST00000474813.5_1_7:1589488-1595099:-|nuORF	REV__ENST00000474813.5_1_7:1589488-1595099:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	532.7967529296875	2	532.798009	1063.58147	-0.41765	-0.00022252	-0.61676	-0.00032861	-1.0344	-0.00055113	532.7973647286237	100.63	1.3968	100.63	100.07	101.46	0					58	32	3	0	0	0	0.68535	1	12879	12879		68.485	2.6815	1	1217100	+		91370	25809	63373	63478	102074	102074					0.052217530597772566
YSRLHLYI	8	Unmodified	_YSRLHLYI_					0	0	0			REV__ENST00000474813.5_1_7:1589488-1595099:-|nuORF	REV__ENST00000474813.5_1_7:1589488-1595099:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	532.7969970703125	2	532.798009	1063.58147	-0.045357	-2.4166E-05	-1.21	-0.00064466	-1.2553	-0.00066883	532.797169869545	100.63	0.68692	100.62	100.25	100.93	-0.0054474					36	16	3	0	0	0	0.74904	1	12815	12815		63.306	3.0123	1	1041100	+		91371	25809	63373	63478	102075	102075					0.052217530597772566
YSRPPATPY	9	Unmodified	_YSRPPATPY_					0	0	0			REV__ENSG00000143353|ENST00000366928|LYPLAL1	REV__ENSG00000143353|ENST00000366928|LYPLAL1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	525.2855224609375	2	526.263999	1050.51345	-0.082072	-4.3192E-05	-1.4289	-0.00075198	-1.511	-0.00079517	526.2636743931507	53.314	0.56155	53.124	52.868	53.429	-0.18982					19	14	2	0	0	0	0.024466	1	5539	5539		33.516	9.3128	1	146350	+		91372	24230	63374	63479	102076	102076					-0.0097911659086094
YSRPPATPY	9	Unmodified	_YSRPPATPY_					0	0	0			REV__ENSG00000143353|ENST00000366928|LYPLAL1	REV__ENSG00000143353|ENST00000366928|LYPLAL1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	526.263999	1050.51345	-0.70767	-0.00037242	2.0625	0.0010854	1.3549	0.00071301	526.7647016159192	53.58	0.14556	53.58	53.509	53.655	0	0.25212	0.0011761	NaN	33.516	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45826	+		91373	24230	63374	63479							-0.0097911659086094
YSRPPATPY	9	Unmodified	_YSRPPATPY_					0	0	0			REV__ENSG00000143353|ENST00000366928|LYPLAL1	REV__ENSG00000143353|ENST00000366928|LYPLAL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	526.263999	1050.51345	-0.47658	-0.00025081	0.13235	6.9651E-05	-0.34423	-0.00018116	526.2638271471668	53.366	0.37135	53.239	53.066	53.437	-0.12705	-0.088558	-0.00085549	NaN	33.516	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195230	+		91374	24230	63374	63479							-0.0097911659086094
YSRPPATPY	9	Unmodified	_YSRPPATPY_					0	0	0			REV__ENSG00000143353|ENST00000366928|LYPLAL1	REV__ENSG00000143353|ENST00000366928|LYPLAL1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	526.263999	1050.51345	-0.23261	-0.00012241	0.34801	0.00018315	0.11541	6.0734E-05	526.2639557524433	53.612	0.42849	53.367	53.163	53.591	-0.2453	0.039464	-0.0006285	NaN	33.516	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292020	+		91375	24230	63374	63479							-0.0097911659086094
YSRRTRDG	8	Unmodified	_YSRRTRDG_					0	0	0			REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	505.2744140625	2	505.759946	1009.50534	-0.032838	-1.6608E-05	1.9879	0.0010054	1.9551	0.00098879	505.7606867771327	37.569	0.74799	37.376	37.114	37.862	-0.193					40	19	3	0	0	0	0.027866	1	3102	3102		40.573	8.6178	1	455670	+		91376	25305	63375	63480	102077	102077					0.000967492123777447
YSRRTRDG	8	Unmodified	_YSRRTRDG_					0	0	0			REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	505.759946	1009.50534	-1.1175	-0.00056519	3.2702	0.0016539	2.1527	0.0010887	505.7612991343373	37.617	0.68531	37.397	37.114	37.799	-0.2195	0.01078	0.00082238	NaN	31.955	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384100	+		91377	25305	63375	63480							0.000967492123777447
YSSEPESVYT	10	Unmodified	_YSSEPESVYT_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	581.2499389648438	2	581.250951	1160.48735	3.5502	0.0020635	-4.1757	-0.0024271	-0.62548	-0.00036356	581.248429402149	18.814	0.49137	18.878	18.649	19.14	0.063307					19	9	3	0	0	0	1.0665	1	295	295		37.159	8.0096	1	71449	+		91378	21249	63376	63481	102078	102078					-0.08647475343650513
YSSEPESVYT	10	Unmodified	_YSSEPESVYT_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	581.250951	1160.48735	1.0764	0.00062567	-1.7101	-0.00099402	-0.63371	-0.00036835	581.24991245019	18.566	0.39138	18.566	18.382	18.774	0	-0.14823	0.00014169	NaN	37.159	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65904	+		91379	21249	63376	63481							-0.08647475343650513
YSSEPESVYT	10	Unmodified	_YSSEPESVYT_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	581.250951	1160.48735	-0.59467	-0.00034565	-0.061759	-3.5898E-05	-0.65643	-0.00038155	581.2508067211453	18.83	0.73667	18.699	18.45	19.187	-0.13148	-0.0154	0.0020579	NaN	37.159	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78219	+		91380	21249	63376	63481							-0.08647475343650513
YSSEPESVYT	10	Unmodified	_YSSEPESVYT_					0	0	0			REV__ENSG00000101639|ENST00000506447|CEP192	REV__ENSG00000101639|ENST00000506447|CEP192	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-3	3		2	581.250951	1160.48735	3.5502	0.0020635	-4.1757	-0.0024271	-0.62548	-0.00036356	581.248429402149	18.814	0.49137	18.878	18.649	19.14	0.063307	0.16363	-0.0027245	NaN	37.159	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71449	+		91381	21249	63376	63481							-0.08647475343650513
YSSLPRQSR	9	Unmodified	_YSSLPRQSR_					0	0	0		nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3	nc|ENSG00000148498|Q8TEW0-5|PARD3	nc|ENSG00000148498|Q8TEW0-5|PARD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	547.2930908203125	2	547.291079	1092.56761	-0.13381	-7.3235E-05	2.9034	0.001589	2.7695	0.0015157	547.292497230248	47.632	0.76852	47.362	47.013	47.781	-0.26939					50	20	4	0	0	0	0.48817	1	4663	4663		60.118	3.3972	1	1613800			91382	6038	63377	63482	102079	102079					0.02502475560709172
YSSMAMCERW	10	Oxidation (M)	_YSSM(Oxidation (M))AMCERW_		YSSM(0.858)AM(0.142)CERW		YSSM(7.8)AM(-7.8)CERW	0	0	1			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	640.2183227539062	2	640.248851	1278.48315	-0.45999	-0.00029451	-0.87644	-0.00056114	-1.3364	-0.00085565	640.2483961020271	72.002	0.28447	71.796	71.699	71.984	-0.20613					10	6	3	0	0	0	0.03519	1	8446	8446		68.787	10.005	2	207430	+		91383	23844	63378	63483	102080	102080		705			-0.14495302634236396
YSSNRSHGSH	10	Unmodified	_YSSNRSHGSH_					0	0	0			REV__nc|ENSG00000167106|Q5T9C2-2|EEIG1	REV__nc|ENSG00000167106|Q5T9C2-2|EEIG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.806640625	2	566.249943	1130.48533	-0.5361	-0.00030357	-0.9542	-0.00054032	-1.4903	-0.00084388	566.2494645403302	32.93	0.36185	32.764	32.556	32.918	-0.16565					13	8	2	0	0	0	0.03519	1	2262	2262		45.972	5.1941	1	109320	+		91384	26105	63379	63484	102081	102081					-0.074690465182357
YSSPRSEEI	9	Unmodified	_YSSPRSEEI_					0	0	0			REV__chr12:8790263-8794305|120|10.86|0.49|4.47|+|2|LINC02972,LINC02972|1	REV__chr12:8790263-8794305|120|10.86|0.49|4.47|+|2|LINC02972,LINC02972|1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	534.2555541992188	2	534.253828	1066.4931	-0.3875	-0.00020702	-0.67528	-0.00036077	-1.0628	-0.00056779	534.2535825643607	106.5	0.83638	106.5	106.02	106.86	0.0018311					34	29	2	0	0	0	0.94809	1	13618	13618		29.15	0	1	278180	+		91385	19364	63380	63485	102082	102082					-0.0374833204132301
YSSSRSDLY	9	Unmodified	_YSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	539.2466430664062	2	539.246003	1076.47745	-0.94136	-0.00050762	0.81764	0.00044091	-0.12372	-6.6717E-05	539.2463798583447	35.768	0.97676	35.562	35.226	36.203	-0.20518					65	26	5	0	0	0	0.041068	3	2741	2730;2741;2752		132.76	41.417	1	5984700			91386	5954	63381	63486	102083;102084;102085	102084					-0.057726185583760525
YSSSRSDLY	9	Unmodified	_YSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	539.2462158203125	2	539.246003	1076.47745	-0.54228	-0.00029242	0.27912	0.00015051	-0.26316	-0.00014191	539.2460852606424	35.707	1.0552	35.495	35.154	36.209	-0.21246					58	28	4	0	0	0	0.013065	3	2727	2717;2727;2739		171.53	33.29	1	5883500			91387	5954	63381	63486	102086;102087;102088	102087					-0.057726185583760525
YSSSRSDLY	9	Unmodified	_YSSSRSDLY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000568578.5_1_X:135956303-135956645:-|nuORF	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	539.2472534179688	2	539.246003	1076.47745	-1.1314	-0.00061008	1.089	0.00058725	-0.042337	-2.283E-05	539.2464743034412	35.588	0.81481	35.402	35.14	35.955	-0.18675					57	22	5	0	0	0	0.03201	3	2710	2688;2699;2710		139.97	38.563	1	5842500			91388	5954	63381	63486	102089;102090;102091	102091					-0.057726185583760525
YSSSRYDD	8	Unmodified	_YSSSRYDD_					0	0	0		ENST00000495785.1_1_1:24298338-24304405:-|nuORF;ENST00000473754.1_1_1:24298061-24301527:-|nuORF;ENST00000473858.5_1_1:24294155-24306819:-|nuORF;nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;ENST00000338597.9_1_1:24297634-24304405:-|nuORF;ENST00000485841.5_1_1:24297634-24301602:-|nuORF;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	ENST00000495785.1_1_1:24298338-24304405:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.2735595703125	2	496.701429	991.388304	0.53295	0.00026472	3.4991	0.001738	4.032	0.0020027	496.7027737180179	40.178	0.46823	40.178	39.879	40.347	0					24	12	3	0	0	0	0.027866	1	3497	3497		17.365	0	1	211620			91389	9726	63382	63487	102092	102092					-0.10773453517901999
YSSTHCLWS	9	Unmodified	_YSSTHCLWS_					0	0	0			REV__ENST00000440595.5_1_20:32580457-32580532:-|nuORF	REV__ENST00000440595.5_1_20:32580457-32580532:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	541.7538452148438	2	542.231842	1082.44913	-1.1892	-0.00064482	2.9083	0.001577	1.7191	0.00093214	542.2336133411537	38.419	0.1722	38.201	38.117	38.289	-0.21848					6	4	2	0	0	0	0.024523	1	3165	3165		37.159	9.2769	1	136750	+		91390	32529	63383	63488	102093	102093					-0.08879639739325285
YSSVNTMYFSQ	11	Unmodified	_YSSVNTMYFSQ_					0	0	0			REV__HERVH-int_dup1969|chr4:182818108-182818486:+|7.476837218884478|0.2118301363735582|5.14|519.0|6|2|sense	REV__HERVH-int_dup1969|chr4:182818108-182818486:+|7.476837218884478|0.2118301363735582|5.14|519.0|6|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	442.4972229003906	3	442.860544	1325.5598	-0.54754	-0.00024248	2.2809	0.0010101	1.7334	0.00076765	443.1964854950918	28.725	1.1573	28.556	28.171	29.329	-0.16897					34	26	2	0	0	0	0.024757	1	1782	1782		32.034	5.2844	1	66159	+		91391	36115	63384	63489	102094	102094					-0.08995464541749243
YSTCDSMGQL	10	Carbamidomethyl (C)	_YSTC(Carbamidomethyl (C))DSMGQL_	YSTC(1)DSMGQL		YSTC(62)DSMGQL		0	1	0			REV__ENST00000358780.9_2_11:95520836-95522562:-|nuORF	REV__ENST00000358780.9_2_11:95520836-95522562:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	581.2310791015625	2	581.231181	1160.44781	-1.3533	-0.00078658	1.2752	0.00074121	-0.078066	-4.5374E-05	581.2317741848962	28.446	0.89016	28.277	28.007	28.897	-0.16897					47	20	3	0	0	0	0.77808	1	1662	1662		62.107	10.915	1	1597800	+		91392	30867	63385	63490	102095	102095	402				-0.1259964189036964
YSTFHLCLSS	10	Unmodified	_YSTFHLCLSS_					0	0	0			REV__ENST00000377403.6_1_1:9328830-9329223:+|nuORF	REV__ENST00000377403.6_1_1:9328830-9329223:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.848876953125	2	579.268424	1156.5223	0.38509	0.00022307	3.9621	0.0022951	4.3472	0.0025182	579.2703884351267	19.17	0.29771	19.009	18.836	19.134	-0.16079					7	5	2	0	0	0	0.03519	1	377	377		20.947	0	1	11395	+		91393	31374	63386	63491	102096	102096					-0.04970511016699675
YSTKRDEP	8	Unmodified	_YSTKRDEP_					0	0	0			REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF	REV__ENST00000414369.2_1_2:53984069-54014663:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.77740478515625	2	498.243264	994.471974	-0.53348	-0.0002658	-2.6408	-0.0013158	-3.1743	-0.0015816	498.2418278414286	27.321	0.76133	27.164	26.672	27.434	-0.15664					23	17	2	0	0	0	0.027866	1	1417	1417		35.618	12.576	1	73691	+		91394	32035	63387	63492	102097	102097					-0.02548297350199391
YSTLWLEA	8	Unmodified	_YSTLWLEA_					0	0	0			REV__nc|ENSG00000170476|Q8WU39-3|MZB1	REV__nc|ENSG00000170476|Q8WU39-3|MZB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	492.2837829589844	2	491.74765	981.480748	0.3367	0.00016557	3.5364	0.001739	3.8731	0.0019046	491.74931661847484	58.627	0.36842	58.718	58.486	58.855	0.091217					14	9	2	0	0	0	0.027866	1	6543	6543		25.45	0	1	168830	+		91395	36922	63388	63493	102098	102098					-0.010733237137174001
YSTPHAFTF	9	Unmodified	_YSTPHAFTF_					0	0	0		ENST00000491290.1_1_3:12641875-12650299:-|nuORF;ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1	ENST00000491290.1_1_3:12641875-12650299:-|nuORF	ENST00000491290.1_1_3:12641875-12650299:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	535.7286376953125	2	535.750724	1069.4869	-0.77653	-0.00041603	-0.089032	-4.7699E-05	-0.86556	-0.00046372	535.750369289578	60.261	0.64701	60.085	59.592	60.239	-0.1761					41	16	4	0	0	0	0.023181	1	6690	6690		94.006	33.034	1	1723800			91396	4577	63389	63494	102099	102099					-0.045068054822195336
YSTPHAFTF	9	Unmodified	_YSTPHAFTF_					0	0	0		ENST00000491290.1_1_3:12641875-12650299:-|nuORF;ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1	ENST00000491290.1_1_3:12641875-12650299:-|nuORF	ENST00000491290.1_1_3:12641875-12650299:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	535.7286987304688	2	535.750724	1069.4869	-1.0404	-0.00055742	-0.54014	-0.00028938	-1.5806	-0.0008468	535.750282594363	60.509	0.56424	60.255	59.94	60.504	-0.25374					38	13	4	0	0	0	0.024021	1	6699	6699		79.451	22.73	1	1684900			91397	4577	63389	63494	102100	102100					-0.045068054822195336
YSVAFYSLD	9	Unmodified	_YSVAFYSLD_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF;LAMA1|p.K1295Ifs*7|1|0.04|ENSG00000101680|chr18:7009356-7009357|-/AATATCATTA|frameshift_variant	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	532.2927856445312	2	532.75039	1063.48623	-0.54925	-0.00029261	-2.7964	-0.0014898	-3.3456	-0.0017824	532.7482815766315	104.24	0.21511	104.24	104.07	104.29	0					7	4	2	0	0	0	0.024323	1	13373	13373		44.117	26.649	1	32353			91398	2343	63390	63495	102101	102101					-0.042976449218940616
YSVAKTDSF	9	Unmodified	_YSVAKTDSF_					0	0	0		ENSG00000154330|ENST00000396396|PGM5	ENSG00000154330|ENST00000396396|PGM5	ENSG00000154330|ENST00000396396|PGM5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	508.2867736816406	2	509.248015	1016.48148	-0.19818	-0.00010092	2.7324	0.0013915	2.5343	0.0012906	509.24924403124277	52.677	0.5659	52.487	52.188	52.754	-0.18982					35	13	3	0	0	0	0.024354	1	5496	5496		38.806	0	1	690210			91399	6404	63391	63496	102102	102102					-0.0261052906465693
YSVDESAGY	9	Unmodified	_YSVDESAGY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	496.2629699707031	2	495.70618	989.397806	-0.74347	-0.00036854	-2.6673	-0.0013222	-3.4107	-0.0016907	495.70475053542856	30.076	1.4301	29.898	29.278	30.708	-0.17818					55	33	2	0	0	0	0.024412	1	1806	1806		24.203	7.7296	1	199570			91400	6159	63392	63497	102103	102103					-0.09731685232372911
YSVDESAGY	9	Unmodified	_YSVDESAGY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	495.70618	989.397806	-0.78852	-0.00039088	-2.1801	-0.0010807	-2.9686	-0.0014716	495.70500957741916	30.169	2.3438	29.925	28.364	30.708	-0.24415	0.046141	0.00065542	NaN	24.203	89	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183710			91401	6159	63392	63497							-0.09731685232372911
YSVDESAGY	9	Unmodified	_YSVDESAGY_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000150893|Q5SZK8-2|FREM2;FREM2|p.F2950Dfs*13|1|0.07|ENSG00000150893|chr13:38878309-38878310|-/GATGTGGAAATGTTATTTCTGTTATATGATAAGG|frameshift_variant	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	495.70618	989.397806	-0.21029	-0.00010424	-3.2462	-0.0016091	-3.4564	-0.0017134	495.704442478185	29.963	1.5547	29.813	29.213	30.768	-0.14952	-0.065323	-0.00040149	NaN	24.203	57	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193870			91402	6159	63392	63497							-0.09731685232372911
YSVIGRSLFK	10	Unmodified	_YSVIGRSLFK_					0	0	0		nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	585.8185424804688	2	585.337498	1168.66044	0.28125	0.00016463	-3.266	-0.0019117	-2.9848	-0.0017471	585.8373448507147	18.948	0.24693	18.789	18.591	18.838	-0.15858					6	4	2	0	0	0	0.03519	1	358	358		44.377	3.599	1	6866.8			91403	4602	63393	63498	102104	102104					0.08285980294067485
YSVRGSNNT	9	Unmodified	_YSVRGSNNT_					0	0	0			REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	REV__nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	499.74298095703125	2	499.238513	996.462472	0.22386	0.00011176	1.5515	0.00077458	1.7754	0.00088633	499.7429323906471	57	1.1443	56.798	56.404	57.549	-0.20208					79	30	6	0	0	0	0.50848	1	6174	6174		58.782	0	1	8987400	+		91404	20892	63394	63499	102105	102105					-0.035900656357057414
YSWNSTETSGG	11	Unmodified	_YSWNSTETSGG_					0	0	0		ENST00000313288.8_1_4:1725579-1729503:+|nuORF	ENST00000313288.8_1_4:1725579-1729503:+|nuORF	ENST00000313288.8_1_4:1725579-1729503:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	594.7442016601562	2	594.743825	1187.4731	-1.3999	-0.00083257	1.7992	0.00107	0.39928	0.00023747	594.7447187905112	30.322	1.1277	30.144	29.824	30.952	-0.17818					66	26	4	0	0	0	0.82076	1	1914	1914		56.434	3.4971	1	2664800			91405	12096	63395	63500	102106	102106					-0.11314127771947824
YSWQPMQLSI	10	Unmodified	_YSWQPMQLSI_					0	0	0			REV__ENST00000559844.5_1_15:64404835-64410372:+|nuORF	REV__ENST00000559844.5_1_15:64404835-64410372:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	626.8062133789062	2	626.805174	1251.59579	-0.37953	-0.00023789	2.0125	0.0012614	1.633	0.0010236	626.8067608866869	110.19	1.1048	110.19	109.85	110.96	0.0059204					73	37	3	0	0	0	1.1179	1	13897	13897		19.997	0	1	106000	+		91406	35127	63396	63501	102107	102107					-0.01993962574215402
YSYCGRGFY	9	Carbamidomethyl (C)	_YSYC(Carbamidomethyl (C))GRGFY_	YSYC(1)GRGFY		YSYC(61)GRGFY		0	1	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	586.748046875	2	586.745116	1171.47568	-0.42758	-0.00025088	4.3532	0.0025542	3.9256	0.0023033	586.7468653877306	61.527	1.1305	61.313	60.842	61.972	-0.21375					72	27	4	0	0	0	0.4752	1	6866	6866		60.972	9.6365	1	2998000			91407	9974	63397	63502	102108	102108	137				-0.10319950847974724
YSYIHNYPL	9	Unmodified	_YSYIHNYPL_					0	0	0			REV__ENSG00000198807|ENST00000361487|PAX9	REV__ENSG00000198807|ENST00000361487|PAX9	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.3308715820312	2	585.284931	1168.55531	-0.54263	-0.00031759	-0.7046	-0.00041239	-1.2472	-0.00072999	585.2855672245616	60.571	0.68346	60.365	59.975	60.658	-0.20599					31	16	3	0	0	0	0.024506	1	6698	6698		30.504	0	1	179690	+		91408	28485	63398	63503	102109	102109					-0.022225609023507786
YSYIHNYPL	9	Unmodified	_YSYIHNYPL_					0	0	0			REV__ENSG00000198807|ENST00000361487|PAX9	REV__ENSG00000198807|ENST00000361487|PAX9	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	585.284931	1168.55531	-1.5675	-0.00091744	2.1182	0.0012397	0.55067	0.0003223	585.2854299161972	60.32	0.36847	60.32	60.104	60.473	0	-0.021129	0.0014323	NaN	30.504	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408820	+		91409	28485	63398	63503							-0.022225609023507786
YSYIHNYPL	9	Unmodified	_YSYIHNYPL_					0	0	0			REV__ENSG00000198807|ENST00000361487|PAX9	REV__ENSG00000198807|ENST00000361487|PAX9	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	585.284931	1168.55531	-1.6421	-0.00096107	1.1105	0.00064995	-0.53157	-0.00031112	585.2853558823185	60.563	0.48755	60.35	60.079	60.567	-0.2134	0.0087158	0.00025273	NaN	30.504	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286770	+		91410	28485	63398	63503							-0.022225609023507786
YSYIHNYPL	9	Unmodified	_YSYIHNYPL_					0	0	0			REV__ENSG00000198807|ENST00000361487|PAX9	REV__ENSG00000198807|ENST00000361487|PAX9	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	585.284931	1168.55531	-1.2511	-0.00073225	1.4488	0.00084794	0.19767	0.00011569	585.2853735118999	60.23	0.452	60.309	60.049	60.501	0.078888	-0.032028	0.00064871	NaN	30.504	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283960	+		91411	28485	63398	63503							-0.022225609023507786
YSYIHNYPL	9	Unmodified	_YSYIHNYPL_					0	0	0			REV__ENSG00000198807|ENST00000361487|PAX9	REV__ENSG00000198807|ENST00000361487|PAX9	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	585.284931	1168.55531	-1.1673	-0.00068319	-1.1975	-0.0007009	-2.3648	-0.0013841	585.2848509991867	60.615	0.68357	60.361	60.014	60.697	-0.25373	0.020543	-0.002449	NaN	30.504	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247370	+		91412	28485	63398	63503							-0.022225609023507786
YSYLFLVSVKK	11	Unmodified	_YSYLFLVSVKK_					0	0	0			REV__ENSG00000128829|ENST00000263791|EIF2AK4	REV__ENSG00000128829|ENST00000263791|EIF2AK4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	449.7718811035156	3	449.595468	1345.76457	0.44149	0.00019849	-2.6667	-0.0011989	-2.2252	-0.0010004	449.5929651095597	19.609	0.6406	19.449	19.134	19.774	-0.16079					40	12	5	0	0	0	0.024746	1	480	480		21.032	1.0018	1	74323	+		91413	23010	63399	63504	102110	102110					0.1055226233090707
YSYNLITF	8	Unmodified	_YSYNLITF_					0	0	0			REV__HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|6|3|sense	REV__HERVH-int_dup116|chr1:68390966-68391185:+|1.2073324984693294|0.0154755330925948|6.29|435.0|6|3|sense	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.2810363769531	2	510.755475	1019.4964	0.046809	2.3908E-05	-0.64697	-0.00033044	-0.60016	-0.00030653	510.75456521668883	61.573	0.94357	61.347	60.706	61.65	-0.22663					38	24	2	0	0	0	0.027866	1	7110	7110		44.117	10.624	1	282870	+		91414	36111	63400	63505	102111	102111					-0.012570371966717175
YSYSTTAVVTN	11	Unmodified	_YSYSTTAVVTN_					0	0	0		ENSG00000118271|ENST00000237014|TTR	ENSG00000118271|ENST00000237014|TTR	ENSG00000118271|ENST00000237014|TTR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	402.8115234375	3	402.527671	1204.56118	0.36634	0.00014746	4.0296	0.001622	4.396	0.0017695	402.52919376965474	28.42	0.37601	28.251	28.048	28.424	-0.16897					14	8	2	0	0	0	0.024746	1	1669	1669		29.245	4.7258	1	39743			91415	3676	63401	63506	102112	102112					-0.0329150718132496
YTAAARRHT	9	Unmodified	_YTAAARRHT_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2676391601562	2	523.778139	1045.54173	-0.20792	-0.0001089	4.1217	0.0021588	3.9138	0.0020499	523.7801095065637	45.587	0.89128	45.63	45.409	46.301	0.043877					33	25	2	0	0	0	0.024374	1	4362	4362		58.782	6.4828	1	1156000			91416	9475	63402	63507	102113	102113					0.020776261090759363
YTAFICLV	8	Unmodified	_YTAFICLV_					0	0	0			REV__ENSG00000135517|ENST00000652304|MIP	REV__ENSG00000135517|ENST00000652304|MIP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	464.250244140625	2	465.243689	928.472826	-0.45541	-0.00021188	-3.3873	-0.0015759	-3.8427	-0.0017878	465.2420870170361	48.415	0.5547	48.262	48.091	48.646	-0.153					21	15	2	0	0	0	0.027866	1	4930	4930		28.254	12.612	1	130710	+		91417	23551	63403	63508	102114	102114					0.005728257651412605
YTAFYAVLV	9	Unmodified	_YTAFYAVLV_					0	0	0			REV__nc|ENSG00000166471|Q5BJD5-3|TMEM41B	REV__nc|ENSG00000166471|Q5BJD5-3|TMEM41B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.2673950195312	2	523.781493	1045.54843	-0.8152	-0.00042699	-2.6721	-0.0013996	-3.4873	-0.0018266	523.7797093116983	45.66	0.84821	45.66	45.278	46.126	0					41	24	3	0	0	0	0.023528	1	4426	4426		50.025	9.4519	1	996090	+		91418	26021	63404	63509	102115	102115					0.027481262170795162
YTAKTKEIRR	10	Unmodified	_YTAKTKEIRR_					0	0	0		OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	633.36865234375	2	633.369861	1264.72517	0.56003	0.00035471	-1.6879	-0.0010691	-1.1279	-0.00071437	633.3686709051378	95.731	3.2648	95.733	94.964	98.228	0.0020676					265	75	5	0	0	0	1.0122	3	12076	12043;12076;12221		44.377	5.1244	1	8480900			91419	18920	63405	63510	102116;102117;102118	102117					0.1033955510006308
YTAKTKEIRR	10	Unmodified	_YTAKTKEIRR_					0	0	0		OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	633.3692016601562	2	633.369861	1264.72517	-0.5109	-0.00032359	-0.65037	-0.00041193	-1.1613	-0.00073551	633.3692528675213	95.936	2.7559	95.799	94.938	97.694	-0.13689					215	62	5	0	0	0	0.98754	1	11803	11803		47.657	20.964	1	9245900			91420	18920	63405	63510	102119	102119					0.1033955510006308
YTAKTKEIRR	10	Unmodified	_YTAKTKEIRR_					0	0	0		OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	OR51I2|p.S293T|1|0.06|ENSG00000187918|chr11:5454366-5454366|G/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3682250976562	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0002	4	11784	11784;11796;11893;11916		45.972	3.599	1	9845500			91421	18920	63405	63510	102120;102121;102122;102123	102120					0.1033955510006308
YTAPLAFMF	9	Unmodified	_YTAPLAFMF_					0	0	0			REV__ENST00000379103.7_1_17:26206084-26206336:-|nuORF	REV__ENST00000379103.7_1_17:26206084-26206336:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.2919311523438	2	530.762246	1059.50994	-0.54714	-0.0002904	-1.3284	-0.00070508	-1.8756	-0.00099548	530.761918481476	31.108	0.28405	30.866	30.711	30.995	-0.24109					9	6	2	0	0	0	0.024466	1	2034	2034		18.324	0	1	62102	+		91422	31426	63406	63511	102124	102124					-0.017435026890780136
YTAPTIAIPV	10	Unmodified	_YTAPTIAIPV_					0	0	0			REV__ENST00000523243.5_1_8:135545163-135577243:-|nuORF	REV__ENST00000523243.5_1_8:135545163-135577243:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	524.26806640625	2	523.30005	1044.58555	-1.0089	-0.00052793	-2.9077	-0.0015216	-3.9165	-0.0020495	523.7995533049209	43.132	0.43811	43.132	42.823	43.261	0					14	11	2	0	0	0	0.03519	1	4028	4028		35.618	0	1	85741	+		91423	34233	63407	63512	102125	102125					0.06503797762820795
YTARILQQL	9	Unmodified	_YTARILQQL_					0	0	0			REV__ENSG00000071189|ENST00000428135|SNX13	REV__ENSG00000071189|ENST00000428135|SNX13	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.3223266601562	2	553.321848	1104.62914	-0.15974	-8.839E-05	-0.30002	-0.00016601	-0.45977	-0.0002544	553.3213812748168	68.474	0.97076	68.181	67.819	68.789	-0.29267					42	22	3	0	0	0	0.31037	1	8179	8179		74.255	4.6274	1	1837900	+		91424	20446	63408	63513	102126	102126					0.08101407260005544
YTARILQQL	9	Unmodified	_YTARILQQL_					0	0	0			REV__ENSG00000071189|ENST00000428135|SNX13	REV__ENSG00000071189|ENST00000428135|SNX13	MULTI-MATCH-MSMS	OPSCC_39_ClassI_Rep-2	2		2	553.321848	1104.62914	-0.15974	-8.839E-05	-0.30002	-0.00016601	-0.45977	-0.0002544	553.3213812748168	68.474	0.97076	68.181	67.819	68.789	-0.29267	0.014708	0.00049136	NaN	74.255	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1837900	+		91425	20446	63408	63513							0.08101407260005544
YTARRVRKG	9	Unmodified	_YTARRVRKG_					0	0	0		ENST00000505484.5_1_4:121737976-121843799:-|nuORF;ENST00000512845.5_1_4:121737455-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-4|PRDM5;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5;ENST00000505033.1_1_4:121806904-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-3|PRDM5	ENST00000505484.5_1_4:121737976-121843799:-|nuORF	ENST00000505484.5_1_4:121737976-121843799:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	553.8308715820312	2	553.830706	1105.64686	0.21415	0.0001186	-1.6041	-0.00088842	-1.39	-0.00076982	553.8296952311518	89.179	2.8831	89.195	88.236	91.119	0.015907					310	68	6	0	0	0	0.89441	1	11304	11304		32.812	0	1	4967900			91426	5274	63409	63514	102127	102127					0.09826167305504896
YTAVQGLTTN	10	Unmodified	_YTAVQGLTTN_					0	0	0			REV__ENST00000467530.5_1_1:85959978-85960173:-|nuORF	REV__ENST00000467530.5_1_1:85959978-85960173:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	534.2739868164062	2	534.272021	1066.52949	-0.49327	-0.00026354	4.2752	0.0022841	3.7819	0.0020206	534.2740558165776	94.518	0.85628	94.518	94.228	95.085	-0.00022888					38	17	3	0	0	0	0.65479	1	12013	12013		70.816	6.6089	1	772030	+		91427	33076	63410	63515	102128	102128					-0.0011145514461077255
YTAVVPLVY	9	Unmodified	_YTAVVPLVY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	512.7892456054688	2	512.789318	1023.56408	0.18931	9.7076E-05	-0.27663	-0.00014185	-0.087317	-4.4775E-05	512.7890824730162	81.333	1.5594	81.104	80.736	82.295	-0.2289					104	36	4	0	0	0	0.14199	4	9764	9764;9781;9794;9809		101.21	24.365	1	5760800			91428	4609	63411	63516	102129;102130;102131;102132	102129					0.05324412734148609
YTAVVPLVY	9	Unmodified	_YTAVVPLVY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	512.7890625	2	512.789318	1023.56408	0.16943	8.6883E-05	-0.45179	-0.00023167	-0.28236	-0.00014479	512.7890513287634	81.345	1.3878	81.152	80.8	82.188	-0.19333					97	32	5	0	0	0	0.14199	2	9789	9772;9789		101.21	40.24	1	6681800			91429	4609	63411	63516	102133;102134	102134					0.05324412734148609
YTAVVPLVY	9	Unmodified	_YTAVVPLVY_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	512.7892456054688	2	512.789318	1023.56408	-0.43267	-0.00022187	0.14028	7.1932E-05	-0.29239	-0.00014994	512.7893565007613	81.273	1.9932	81.131	80.656	82.649	-0.14249					121	46	4	0	0	0	0.088511	3	9762	9750;9762;9781		114.59	48.783	1	7232400			91430	4609	63411	63516	102135;102136;102137	102136					0.05324412734148609
YTCLSRFTL	9	Unmodified	_YTCLSRFTL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	552.2826538085938	2	552.281334	1102.54812	-0.30398	-0.00016789	3.0367	0.0016771	2.7327	0.0015092	552.2828332818825	78.344	1.2833	78.344	77.959	79.243	0					67	30	3	0	0	0	0.34489	1	9701	9701		69.628	18.292	1	2453000	+		91431	20533	63412	63517	102138	102138					0.0009438322558708023
YTCLSRFTL	9	Unmodified	_YTCLSRFTL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.2825317382812	2	552.281334	1102.54812	0.20547	0.00011348	2.6884	0.0014848	2.8939	0.0015982	552.2826024640283	78.457	1.1155	78.265	77.933	79.049	-0.19211					57	26	3	0	0	0	0.56934	1	9678	9678		54.776	2.4771	1	2315600	+		91432	20533	63412	63517	102139	102139					0.0009438322558708023
YTCLSRFTL	9	Unmodified	_YTCLSRFTL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	552.2824096679688	2	552.281334	1102.54812	-0.51211	-0.00028283	3.214	0.001775	2.7019	0.0014922	552.2829268606272	78.348	1.241	78.364	77.948	79.189	0.015907					54	29	3	0	0	0	0.56934	1	9632	9632		54.776	3.4409	1	2302000	+		91433	20533	63412	63517	102140	102140					0.0009438322558708023
YTDAALQEA	9	Unmodified	_YTDAALQEA_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	490.7510681152344	2	491.229822	980.445091	0.1636	8.0364E-05	0.2075	0.00010193	0.37109	0.00018229	491.2297428342431	50.295	0.5659	50.015	49.766	50.332	-0.27977					35	14	3	0	0	0	0.024487	1	5074	5074		17.365	0	1	1342000			91434	2963	63413	63518	102141	102141					-0.04591405961389228
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.2799682617188	2	518.277106	1034.53966	-0.69376	-0.00035956	-0.02715	-1.4071E-05	-0.72091	-0.00037363	518.277035061119	48.755	1.4338	48.475	47.886	49.32	-0.27977					70	38	3	0	0	0	0.016758	1	4848	4848		153.04	86.607	1	3835500			91435	9414	63414	63519	102142	102142					0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.2815551757812	2	518.277106	1034.53966	-0.092218	-4.7795E-05	-0.49307	-0.00025555	-0.58529	-0.00030334	518.2767515224923	48.64	1.0554	48.458	47.945	49	-0.18206					52	22	3	0	0	0	0.014918	1	4825	4825		162.25	88.278	1	3692900			91436	9414	63414	63519	102143	102143					0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	518.277106	1034.53966	-0.87861	-0.00045536	-0.032236	-1.6707E-05	-0.91084	-0.00047207	518.2768150695965	48.527	0.7616	48.527	48.243	49.005	0	0.0024011	-7.3863E-05	NaN	153.04	57	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2002300			91437	9414	63414	63519							0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	518.277106	1034.53966	-0.58667	-0.00030406	-0.21859	-0.00011329	-0.80526	-0.00041735	518.2767800404386	48.677	0.60363	48.524	48.261	48.864	-0.15277	-0.00050465	-0.00026702	NaN	153.04	43	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2107000			91438	9414	63414	63519							0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	518.277106	1034.53966	-0.77335	-0.00040081	-0.91802	-0.00047579	-1.6914	-0.0008766	518.2762734797657	48.372	1.154	48.439	48.154	49.308	0.066799	-0.085716	-0.00099202	NaN	153.04	57	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2205600			91439	9414	63414	63519							0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	518.277106	1034.53966	-0.96619	-0.00050076	0.29716	0.00015401	-0.66904	-0.00034675	518.2771816566964	48.471	1.2231	48.374	47.966	49.19	-0.097553	-0.15069	0.00026757	NaN	153.04	71	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3393800			91440	9414	63414	63519							0.023771525806068894
YTDATPLRV	9	Unmodified	_YTDATPLRV_					0	0	0		ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51;ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	518.277106	1034.53966	-0.089951	-4.6619E-05	-1.0755	-0.00055743	-1.1655	-0.00060405	518.7781305660179	48.99	0.48772	48.808	48.702	49.19	-0.18206	0.28372	-0.0011553	NaN	153.04	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	730940			91441	9414	63414	63519							0.023771525806068894
YTDATSKY	8	Unmodified	_YTDATSKY_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	474.7189636230469	2	474.71909	947.423627	-0.3525	-0.00016734	0.51356	0.00024379	0.16106	7.6457E-05	474.71919655423176	27.901	0.97301	27.749	27.23	28.203	-0.15195					48	23	4	0	0	0	0.061055	1	1555	1555		171.38	89.08	1	2749500			91442	2417	63415	63520	102144	102144					-0.05218790990102207
YTDENQHQY	9	Unmodified	_YTDENQHQY_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	599.244140625	2	599.243992	1196.47343	-0.70725	-0.00042381	0.41319	0.0002476	-0.29406	-0.00017622	599.2442225851205	27.339	1.0583	27.096	26.786	27.845	-0.24217					66	24	4	0	0	0	0.0090779	3	1493	1493;1505;1517		235.12	125	1	3730600			91443	7349	63416	63521	102145;102146;102147	102145					-0.11694708052095848
YTDENQHQY	9	Unmodified	_YTDENQHQY_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	599.24365234375	2	599.243992	1196.47343	-1.0118	-0.00060633	0.59158	0.0003545	-0.42025	-0.00025183	599.2443489227019	27.198	1.0158	27.029	26.594	27.61	-0.16816					100	23	6	0	0	0	0.016169	4	1474	1464;1474;1485;1500		219.56	97.388	1	3696000			91444	7349	63416	63521	102148;102149;102150;102151	102149					-0.11694708052095848
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	618.7797241210938	2	618.78021	1235.54587	-0.19288	-0.00011935	0.51115	0.00031629	0.31827	0.00019694	618.7804200430081	52.867	1.0846	52.74	52.353	53.437	-0.12705					75	27	4	0	0	0	1.0084E-05	3	5506	5498;5506;5519		223.32	135.62	1	2560000			91445	2378	63417	63522	102152;102153;102154	102153					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	618.7805786132812	2	618.78021	1235.54587	-0.31984	-0.00019791	0.40146	0.00024841	0.081615	5.0502E-05	618.7803228578409	53.102	0.88453	52.844	52.523	53.408	-0.25838					69	22	4	0	0	0	4.429E-06	3	5526	5526;5536;5548		243.29	144.78	1	3123300			91446	2378	63417	63522	102155;102156;102157	102155					-0.06248373978496602
YTDFDGTRVY	10	Unmodified	_YTDFDGTRVY_					0	0	0		ENSG00000102096|ENST00000376509|PIM2;ENSG00000137193|ENST00000373509|PIM1;ENSG00000198355|ENST00000360612|PIM3;nc|ENSG00000137193|P11309-2|PIM1	ENSG00000102096|ENST00000376509|PIM2	ENSG00000102096|ENST00000376509|PIM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	618.7793579101562	2	618.78021	1235.54587	-0.0064886	-4.015E-06	-0.20589	-0.0001274	-0.21238	-0.00013142	618.779974862862	52.937	0.92502	52.747	52.47	53.395	-0.18981					68	23	4	0	0	0	6.1203E-05	2	5507	5507;5518		209.21	131.89	1	3743800			91447	2378	63417	63522	102158;102159	102158					-0.06248373978496602
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.Q121Sfs*8|1|0.1|ENSG00000110697|chr11:67502347-67502347|C/-|frameshift_variant;PITPNM1|p.G296Rfs*37|1|0.29|ENSG00000110697|chr11:67500177-67500178|-/G|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.2277221679688	2	551.22781	1100.44107	-0.38991	-0.00021493	1.3631	0.00075139	0.97322	0.00053647	551.2283677098817	39.569	0.9817	39.405	38.862	39.844	-0.16458					62	25	4	0	0	0	0.012363	1	3379	3379		136.99	59.672	1	2150200			91448	18110	63418	63523	102160	102160					-0.10513495455074917
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.Q121Sfs*8|1|0.1|ENSG00000110697|chr11:67502347-67502347|C/-|frameshift_variant;PITPNM1|p.G296Rfs*37|1|0.29|ENSG00000110697|chr11:67500177-67500178|-/G|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	551.2284545898438	2	551.22781	1100.44107	-0.3967	-0.00021867	1.3305	0.00073341	0.93381	0.00051474	551.2283419903157	39.702	0.85704	39.479	39.149	40.006	-0.22311					58	21	4	0	0	0	7.412E-05	1	3384	3384		169.65	79.282	1	1839900			91449	18110	63418	63523	102161	102161					-0.10513495455074917
YTDGPGGSGQY	11	Unmodified	_YTDGPGGSGQY_					0	0	0		nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;PITPNM1|p.Q121Sfs*8|1|0.1|ENSG00000110697|chr11:67502347-67502347|C/-|frameshift_variant;PITPNM1|p.G296Rfs*37|1|0.29|ENSG00000110697|chr11:67500177-67500178|-/G|frameshift_variant;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	nc|ENSG00000090975|Q9BZ72-2|PITPNM2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	551.7462158203125	2	551.22781	1100.44107	-0.12284	-6.7712E-05	0.83859	0.00046226	0.71575	0.00039454	551.2281172847318	39.615	0.91224	39.388	39.021	39.933	-0.22725					65	23	4	0	0	0	0.014012	1	3348	3348		89.029	37.836	1	1973800			91450	18110	63418	63523	102162	102162					-0.10513495455074917
YTDHLTIYQ	9	Unmodified	_YTDHLTIYQ_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.2101440429688	2	577.279846	1152.54514	-0.37297	-0.00021531	-0.35909	-0.0002073	-0.73206	-0.00042261	577.7808327961094	56.005	0.48051	55.789	55.598	56.078	-0.21607					17	12	2	0	0	0	0.024412	1	6024	6024		50.025	11.218	1	121210	+		91451	25290	63419	63524	102163	102163					-0.025031686275724496
YTDHQNSSSY	10	Unmodified	_YTDHQNSSSY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	601.2415771484375	2	601.241449	1200.46835	-0.89045	-0.00053538	0.86804	0.0005219	-0.022408	-1.3473E-05	601.2419587745337	25.349	0.76074	25.123	24.842	25.602	-0.22683					55	17	5	0	0	0	0.00084957	3	1199	1187;1199;1211		191.45	92.82	1	3579600			91452	4102	63420	63525	102164;102165;102166	102165					-0.12387011914688628
YTDHQNSSSY	10	Unmodified	_YTDHQNSSSY_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	601.241449	1200.46835	-0.63891	-0.00038414	0.69654	0.00041879	0.057634	3.4652E-05	601.2416406609813	25.214	0.50747	25.043	24.781	25.288	-0.17078	-0.039746	-0.000186	NaN	191.45	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119720			91453	4102	63420	63525							-0.12387011914688628
YTDIINELN	9	Unmodified	_YTDIINELN_					0	0	0			REV__nc|ENSG00000142606|Q495T6-2|MMEL1	REV__nc|ENSG00000142606|Q495T6-2|MMEL1	MSMS	OPSCC_40_ClassI_Rep-2	5	547.7710571289062	2	547.771854	1093.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.12	1	103.99	103.49	104.49	-0.12927								0	0	0	0.63694	1	12966	12966		33.922	2.3918	1		+		91454	24167	63421	63526	102167	102167					-0.01386874864465426
YTDITYSFY	9	Unmodified	_YTDITYSFY_					0	0	0		nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	586.76171875	2	586.760955	1171.50736	-0.52349	-0.00030716	0.63435	0.00037221	0.11086	6.5049E-05	586.7611557756086	76.729	0.67856	76.477	76.145	76.823	-0.25162					47	15	4	0	0	0	0.31247	1	9123	9123		73.975	16.163	1	721030			91455	5966	63422	63527	102168	102168					-0.07153679613043096
YTDITYSFY	9	Unmodified	_YTDITYSFY_					0	0	0		nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	nc|ENSG00000147434|Q15825-2|CHRNA6	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	586.7606201171875	2	586.760955	1171.50736	-0.73377	-0.00043055	0.69212	0.00040611	-0.041645	-2.4436E-05	586.7612211726155	76.504	0.88565	76.335	76.054	76.939	-0.16854					57	20	4	0	0	0	0.13494	1	9077	9077		102.77	38.566	1	787780			91456	5966	63422	63527	102169	102169					-0.07153679613043096
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	537.2664794921875	2	537.266739	1072.51892	-0.28743	-0.00015443	-0.077742	-4.1768E-05	-0.36517	-0.00019619	537.266628452514	32.345	1.0047	32.108	31.824	32.829	-0.23666					59	23	5	0	0	0	0.17199	4	2218	2206;2218;2231;2246		145.16	73.278	1	3908800			91457	10541	63423	63528	102170;102171;102172;102173	102171					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	537.2666015625	2	537.266739	1072.51892	0.047035	2.5271E-05	-0.5034	-0.00027046	-0.45636	-0.00024519	537.2664248994857	32.428	1.1286	32.236	31.856	32.985	-0.19261					74	26	5	0	0	0	0.19379	4	2235	2211;2223;2235;2250		141.52	67.265	1	3376900			91458	10541	63423	63528	102174;102175;102176;102177	102176					-0.014434377990482972
YTDKIDRY	8	Unmodified	_YTDKIDRY_					0	0	0		ENST00000494815.1_1_11:864058-865677:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	ENST00000494815.1_1_11:864058-865677:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	537.2666625976562	2	537.266739	1072.51892	-0.98648	-0.00053	0.43763	0.00023513	-0.54885	-0.00029488	537.2668958970845	32.275	0.94628	32.117	31.861	32.807	-0.15772					61	22	4	0	0	0	0.060524	3	2193	2181;2193;2206		171.53	81.162	1	4139300			91459	10541	63423	63528	102178;102179;102180	102179					-0.014434377990482972
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(190)TY	0	0	1		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	525.7444458007812	2	525.74425	1049.47395	-0.53634	-0.00028198	0.84432	0.0004439	0.30798	0.00016192	525.7445180739844	39.911	0.64048	39.761	39.513	40.153	-0.1497					48	16	4	0	0	0	0.047601	2	3421	3409;3421		186.09	81.343	1	3066200			91460	1589	63424	63529	102181;102182	102182		56			-0.048810046565904486
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(130)TY	0	0	1		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	525.7439575195312	2	525.74425	1049.47395	-0.27715	-0.00014571	0.45677	0.00024014	0.17962	9.4432E-05	525.7443077252252	40.083	0.7484	39.858	39.62	40.368	-0.225					43	19	3	0	0	0	0.23402	1	3432	3432		134.81	38.62	1	3016200			91461	1589	63424	63529	102183	102183		56			-0.048810046565904486
YTDKIMTY	8	Oxidation (M)	_YTDKIM(Oxidation (M))TY_		YTDKIM(1)TY		YTDKIM(160)TY	0	0	1		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	525.7435302734375	2	525.74425	1049.47395	-0.51402	-0.00027024	0.84351	0.00044347	0.32949	0.00017323	525.7444752994552	40.085	0.76629	39.854	39.507	40.273	-0.23021					55	19	4	0	0	0	0.095325	3	3424	3414;3424;3437		161.9	44.995	1	2631000			91462	1589	63424	63529	102184;102185;102186	102185		56			-0.048810046565904486
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	517.7468872070312	2	517.746793	1033.47903	-0.39555	-0.00020479	1.9941	0.0010325	1.5986	0.00082767	517.7469696189601	47.583	0.95039	47.486	47.2	48.15	-0.097107					84	25	6	0	0	0	0.095325	4	4668	4658;4668;4680;4692		161.9	65.708	1	7259100			91463	1589	63424	63530	102187;102188;102189;102190	102188					-0.0363670079395888
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	517.7467651367188	2	517.746793	1033.47903	-0.2399	-0.00012421	0.93137	0.00048222	0.69147	0.00035801	517.746845775777	47.899	1.0271	47.623	47.194	48.222	-0.27598					66	27	3	0	0	0	0.05419	4	4703	4692;4703;4715;4728		176.41	55.79	1	7931600			91464	1589	63424	63530	102191;102192;102193;102194	102192					-0.0363670079395888
YTDKIMTY	8	Unmodified	_YTDKIMTY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	517.747314453125	2	517.746793	1033.47903	0.23704	0.00012272	1.349	0.00069842	1.586	0.00082115	517.7466135675995	47.687	1.0296	47.5	47.199	48.229	-0.18684					85	27	6	0	0	0	0.2677	4	4685	4663;4673;4685;4698		125.81	31.107	1	7806300			91465	1589	63424	63530	102195;102196;102197;102198	102197					-0.0363670079395888
YTDKTLRDMA	10	Unmodified	_YTDKTLRDMA_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	607.2957153320312	2	607.297713	1212.58087	-1.2866	-0.00078135	-1.8379	-0.0011161	-3.1245	-0.0018975	607.2965656710767	64.836	0.75647	64.602	64.295	65.052	-0.2345					55	18	4	0	0	0	0.1587	3	7372	7372;7384;7395		126.24	58.749	1	2287700	+		91466	28815	63425	63531	102199;102200;102201	102199					-0.016914544422206745
YTDKTLRDMA	10	Unmodified	_YTDKTLRDMA_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	607.296142578125	2	607.297713	1212.58087	-0.9769	-0.00059327	-2.1922	-0.0013313	-3.169	-0.0019246	607.2963785762537	64.763	0.72155	64.561	64.301	65.023	-0.20254					49	17	4	0	0	0	0.1587	2	7381	7381;7394		126.24	58.749	1	1542100	+		91467	28815	63425	63531	102202;102203	102202					-0.016914544422206745
YTDKTLRDMA	10	Unmodified	_YTDKTLRDMA_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	607.2958984375	2	607.297713	1212.58087	-0.76604	-0.00046521	-2.6636	-0.0016176	-3.4297	-0.0020828	607.2960968207191	64.819	0.75581	64.564	64.307	65.063	-0.25563					49	18	4	0	0	0	0.24941	2	7368	7368;7380		114.89	37.577	1	1873000	+		91468	28815	63425	63531	102204;102205	102204					-0.016914544422206745
YTDKTLRDMA	10	Unmodified	_YTDKTLRDMA_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	607.297713	1212.58087	-1.2866	-0.00078135	-1.8379	-0.0011161	-3.1245	-0.0018975	607.2965656710767	64.836	0.75647	64.602	64.295	65.052	-0.2345	0.026319	0.00030037	NaN	126.24	55	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2287700	+		91469	28815	63425	63531							-0.016914544422206745
YTDKTLRDMA	10	Unmodified	_YTDKTLRDMA_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-2	5		2	607.297713	1212.58087	-0.9769	-0.00059327	-2.1922	-0.0013313	-3.169	-0.0019246	607.2963785762537	64.763	0.72155	64.561	64.301	65.023	-0.20254	-0.014622	-0.00012995	NaN	126.24	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1542100	+		91470	28815	63425	63531							-0.016914544422206745
YTDKTLRDMA	10	Unmodified	_YTDKTLRDMA_					0	0	0			REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	REV__ENST00000490863.5_1_1:54653465-54661292:-|nuORF	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-3	6		2	607.297713	1212.58087	-0.76604	-0.00046521	-2.6636	-0.0016176	-3.4297	-0.0020828	607.2960968207191	64.819	0.75581	64.564	64.307	65.063	-0.25563	-0.011697	-0.00070262	NaN	126.24	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1873000	+		91471	28815	63425	63531							-0.016914544422206745
YTDLRKNED	9	Unmodified	_YTDLRKNED_					0	0	0		ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	578.2099609375	2	577.277835	1152.54112	-0.77958	-0.00045003	3.9783	0.0022966	3.1987	0.0018465	577.2802003007147	55.922	0.36103	55.765	55.572	55.933	-0.15656					16	9	2	0	0	0	0.024405	1	6013	6013		53.351	3.3269	1	205880			91472	15954	63426	63532	102206	102206					-0.02905258121290899
YTDLRKNED	9	Unmodified	_YTDLRKNED_					0	0	0		ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	578.2092895507812	2	577.277835	1152.54112	-1.44	-0.0008313	2.3901	0.0013798	0.95008	0.00054846	577.2802930184358	55.995	0.51623	55.779	55.602	56.118	-0.21551					22	13	3	0	0	0	0.024294	1	6012	6012		65.803	40.353	1	130510			91473	15954	63426	63532	102207	102207					-0.02905258121290899
YTDLRKNED	9	Unmodified	_YTDLRKNED_					0	0	0		ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	577.277835	1152.54112	-0.48658	-0.00028089	-2.5801	-0.0014894	-3.0667	-0.0017703	577.7769203782169	55.733	0.32168	55.733	55.536	55.858	0	0.049056	-0.0053585	NaN	65.803	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122770			91474	15954	63426	63532							-0.02905258121290899
YTDLRKNED	9	Unmodified	_YTDLRKNED_					0	0	0		ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	577.277835	1152.54112	-0.27991	-0.00016159	-2.1795	-0.0012582	-2.4594	-0.0014198	577.7769813988208	55.727	0.30043	55.571	55.404	55.704	-0.15601	-0.11247	-0.004896	NaN	65.803	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72851			91475	15954	63426	63532							-0.02905258121290899
YTDLRKNED	9	Unmodified	_YTDLRKNED_					0	0	0		ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	ENST00000519524.1_1_8:42213005-42218898:+|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	577.277835	1152.54112	-1.305	-0.00075335	-0.12805	-7.3923E-05	-1.4331	-0.00082728	577.7779987824512	55.368	0.34147	55.466	55.22	55.561	0.098015	-0.21821	-0.0025275	NaN	65.803	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105390			91476	15954	63426	63532							-0.02905258121290899
YTDNLVRVW	9	Unmodified	_YTDNLVRVW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	583.3037109375	2	583.303655	1164.59276	-0.6516	-0.00038008	-0.26122	-0.00015237	-0.91282	-0.00053245	583.3035218996155	64.821	2.1294	64.586	64.216	66.345	-0.2345					146	52	4	0	0	0	0.01388	7	7353	7353;7363;7375;7387;7399;7412;7426		219.56	120.19	1	48982000			91477	10362	63427	63533	102208;102209;102210;102211;102212;102213;102214	102208					0.01704530363304002
YTDNLVRVW	9	Unmodified	_YTDNLVRVW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	583.3031616210938	2	583.303655	1164.59276	-1.443	-0.00084173	0.51992	0.00030327	-0.92311	-0.00053846	583.3039953152725	64.8	2.3161	64.597	64.144	66.46	-0.20254					169	57	5	0	0	0	0.01388	8	7366	7354;7366;7378;7390;7402;7414;7426;7460		209.84	116.87	1	53742000			91478	10362	63427	63533	102215;102216;102217;102218;102219;102220;102221;102222	102216					0.01704530363304002
YTDNLVRVW	9	Unmodified	_YTDNLVRVW_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000509148.1_1_5:180663979-180664048:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	583.3035888671875	2	583.303655	1164.59276	-1.0491	-0.00061195	-0.2767	-0.0001614	-1.3258	-0.00077335	583.3036248583493	64.856	2.2206	64.601	64.191	66.412	-0.25563					182	55	7	0	0	0	0.0090779	7	7359	7347;7359;7371;7383;7395;7407;7421		235.12	133.52	1	52028000			91479	10362	63427	63533	102223;102224;102225;102226;102227;102228;102229	102224					0.01704530363304002
YTDNWLAVY	9	Unmodified	_YTDNWLAVY_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	572.7687377929688	2	572.769114	1143.52368	0.70961	0.00040644	-0.4895	-0.00028037	0.22011	0.00012607	572.7685934124338	83.313	1.3255	83.101	82.747	84.073	-0.21159					65	30	4	0	0	0	0.074956	4	10029	10029;10040;10053;10066		119.56	50.77	1	1922600			91480	674	63428	63534	102230;102231;102232;102233	102230					-0.04234553656283424
YTDNWLAVY	9	Unmodified	_YTDNWLAVY_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	572.76904296875	2	572.769114	1143.52368	0.38635	0.00022129	-0.03866	-2.2143E-05	0.34769	0.00019915	572.7687510702491	83.225	1.4051	83.055	82.69	84.096	-0.16915					67	32	4	0	0	0	0.040175	4	10048	10025;10036;10048;10061		133.47	59.214	1	2424000			91481	674	63428	63534	102234;102235;102236;102237	102236					-0.04234553656283424
YTDNWLAVY	9	Unmodified	_YTDNWLAVY_					0	0	0		DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant;ENSG00000134757|ENST00000257189|DSG3	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	DSG3|p.H667Ifs*23|1|0.23|ENSG00000134757|chr18:31472383-31472383|T/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	572.7691040039062	2	572.769114	1143.52368	-0.10047	-5.7549E-05	0.49929	0.00028598	0.39882	0.00022843	572.7689806234843	83.241	1.1945	83.102	82.781	83.976	-0.1386					72	27	5	0	0	0	0.040175	5	10022	10012;10022;10032;10047;10060		133.47	51.229	1	2116200			91482	674	63428	63534	102238;102239;102240;102241;102242	102239					-0.04234553656283424
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.2645874023438	2	597.264727	1192.5149	-0.52546	-0.00031384	0.29109	0.00017386	-0.23437	-0.00013998	597.2648969402098	42.947	0.64285	42.835	42.576	43.218	-0.11253					45	16	4	0	0	0	0.013719	2	3895	3895;3907		168.26	101.83	1	2648300			91483	2543	63429	63535	102243;102244	102243					-0.07365527292745355
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.264404296875	2	597.264727	1192.5149	-0.8739	-0.00052195	0.76351	0.00045602	-0.11039	-6.5933E-05	597.2651663847607	43.121	0.71687	42.884	42.6	43.317	-0.23736					51	18	4	0	0	0	0.01456	2	3912	3912;3923		186.41	119.98	1	2389200			91484	2543	63429	63535	102245;102246	102245					-0.07365527292745355
YTDQFSRNY	9	Unmodified	_YTDQFSRNY_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.2647094726562	2	597.264727	1192.5149	-0.98138	-0.00058614	0.79439	0.00047446	-0.18699	-0.00011168	597.2652192786103	43.192	0.70403	42.966	42.675	43.379	-0.22597					45	18	4	0	0	0	0.015203	1	3922	3922		160.82	102.04	1	2558800			91485	2543	63429	63535	102247	102247					-0.07365527292745355
YTDQLSRY	8	Unmodified	_YTDQLSRY_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2513427734375	2	523.251089	1044.48762	-0.33138	-0.0001734	0.23545	0.0001232	-0.095932	-5.0197E-05	523.2511558353604	35.184	1.0706	34.968	34.671	35.741	-0.21555					65	27	3	0	0	0	0.74904	1	2638	2638		63.306	4.5243	1	16505000	+		91486	36984	63430	63536	102248	102248					-0.032840108331583906
YTDQLSRY	8	Unmodified	_YTDQLSRY_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.2510375976562	2	523.251089	1044.48762	-0.32064	-0.00016778	0.14834	7.7618E-05	-0.17231	-9.0159E-05	523.2510851300841	35.13	1.0578	34.918	34.56	35.618	-0.21246					59	26	3	0	0	0	0.50239	3	2637	2614;2625;2637		85.359	8.5853	1	13949000	+		91487	36984	63430	63536	102249;102250;102251	102251					-0.032840108331583906
YTDQLSRY	8	Unmodified	_YTDQLSRY_					0	0	0			REV__nc|ENSG00000179583|P33076-2|CIITA	REV__nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.2517700195312	2	523.251089	1044.48762	-0.38765	-0.00020284	0.17105	8.9502E-05	-0.2166	-0.00011334	523.2510963757289	35.042	0.96111	34.855	34.56	35.521	-0.18675					58	24	3	0	0	0	0.50239	3	2591	2591;2602;2613		85.359	11.104	1	16343000	+		91488	36984	63430	63536	102252;102253;102254	102252					-0.032840108331583906
YTDSRLYK	8	Unmodified	_YTDSRLYK_					0	0	0			REV__ENSG00000135697|ENST00000258168|BCO1	REV__ENSG00000135697|ENST00000258168|BCO1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2511596679688	2	523.269281	1044.52401	-0.38587	-0.00020192	0.88845	0.0004649	0.50258	0.00026298	523.2683935520462	34.995	0.30437	34.808	34.681	34.985	-0.18675					11	7	2	0	0	0	0.027866	1	2602	2602		73.975	22.639	1	66495	+		91489	23570	63431	63537	102255	102255					0.0035286606357658457
YTDSSSILNY	10	Unmodified	_YTDSSSILNY_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	581.7664794921875	2	581.766768	1161.51898	-0.52001	-0.00030253	-0.3794	-0.00022072	-0.89941	-0.00052325	581.7665314371475	65.365	0.56693	65.127	64.644	65.211	-0.23743					41	13	4	0	0	0	0.40067	1	7462	7462		98.629	43.853	1	1366200			91490	3130	63432	63538	102256	102256					-0.05531482589708503
YTDSSSILNY	10	Unmodified	_YTDSSSILNY_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	581.81640625	2	581.766768	1161.51898	-2.133	-0.0012409	1.146	0.00066668	-0.98702	-0.00057422	581.7674983456111	65.339	0.80547	65.136	64.461	65.266	-0.20254					41	19	4	0	0	0	0.03519	1	7447	7447		74.255	7.8258	1	1642100			91491	3130	63432	63538	102257	102257					-0.05531482589708503
YTDSSSILNY	10	Unmodified	_YTDSSSILNY_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	581.7666015625	2	581.766768	1161.51898	-1.0055	-0.00058499	0.26408	0.00015364	-0.74146	-0.00043136	581.7669270875266	65.381	0.48592	65.13	64.743	65.229	-0.25112					29	11	3	0	0	0	0.21865	1	7452	7452		118.74	46.866	1	1531000			91492	3130	63432	63538	102258	102258					-0.05531482589708503
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	564.721923828125	2	564.722027	1127.4295	-0.15766	-8.9034E-05	-0.099621	-5.6258E-05	-0.25728	-0.00014529	564.7219508595803	49.421	1.8053	49.32	48.955	50.76	-0.1008					129	47	5	0	0	0	0.012965	6	4948	4937;4948;4960;4972;4985;4997		197.6	63.787	1	34208000			91493	6721	63433	63539	102259;102260;102261;102262;102263;102264	102260					-0.12911737269087098
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.7218017578125	2	564.722027	1127.4295	0.057918	3.2708E-05	-0.24852	-0.00014035	-0.1906	-0.00010764	564.7218793179903	49.727	1.6518	49.448	49.123	50.775	-0.27977					127	43	6	0	0	0	0.012965	7	4995	4974;4983;4995;5007;5020;5033;5045		181.81	47.993	1	34456000			91494	6721	63433	63539	102265;102266;102267;102268;102269;102270;102271	102267					-0.12911737269087098
YTDSYTDTY	9	Unmodified	_YTDSYTDTY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	564.7223510742188	2	564.722027	1127.4295	0.11605	6.5538E-05	-0.39056	-0.00022056	-0.2745	-0.00015502	564.7217952801866	49.543	2.1816	49.362	49.04	51.222	-0.18071					142	57	6	0	0	0	0.012965	7	4996	4951;4959;4971;4983;4996;5008;5022		187.63	49.86	1	40054000			91495	6721	63433	63539	102272;102273;102274;102275;102276;102277;102278	102276					-0.12911737269087098
YTDTHDNTRY	10	Unmodified	_YTDTHDNTRY_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	429.18646240234375	3	429.186308	1284.53709	0.0028416	1.2196E-06	0.145	6.2233E-05	0.14785	6.3453E-05	429.1862092725456	25.004	0.69508	24.777	24.494	25.19	-0.22683					46	15	5	0	0	0	0.96069	2	1147	1147;1160		50.034	5.0113	1	490040			91496	9491	63434	63540	102279;102280	102279					-0.09379347615004008
YTDTHDNTRY	10	Unmodified	_YTDTHDNTRY_					0	0	0		PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	PTCH1|p.D860Vfs*3|1|0.68|ENSG00000185920|chr9:95461980-95461981|-/A|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	429.18658447265625	3	429.186308	1284.53709	0.15356	6.5906E-05	-0.090959	-3.9038E-05	0.062602	2.6868E-05	429.1862058216884	24.8	0.82478	24.625	24.252	25.077	-0.17484					55	18	5	0	0	0	0.811	1	1114	1114		59.931	29.362	1	510670			91497	9491	63434	63540	102281	102281					-0.09379347615004008
YTDTYTEAY	9	Unmodified	_YTDTYTEAY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	563.7322387695312	2	563.732394	1125.45024	0.5823	0.00032826	-0.82107	-0.00046286	-0.23877	-0.0001346	563.7317876780976	51.531	1.1987	51.413	50.966	52.165	-0.11875					86	31	4	0	0	0	0.034181	4	5299	5287;5299;5310;5324		138.24	66.947	1	5185900			91498	6721	63435	63541	102282;102283;102284;102285	102283					-0.10747146889411852
YTDTYTEAY	9	Unmodified	_YTDTYTEAY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	563.7322387695312	2	563.732394	1125.45024	-1.5534	-0.00087571	1.1149	0.0006285	-0.43853	-0.00024721	563.7328980629741	51.823	1.0386	51.554	51.123	52.162	-0.26903					84	27	4	0	0	0	0.06122	4	5346	5322;5333;5346;5359		124.59	66.783	1	5399900			91499	6721	63435	63541	102286;102287;102288;102289	102288					-0.10747146889411852
YTDTYTEAY	9	Unmodified	_YTDTYTEAY_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	563.732421875	2	563.732394	1125.45024	0.7852	0.00044264	-1.3503	-0.00076121	-0.5651	-0.00031857	563.7315464667718	51.614	1.0945	51.43	51.099	52.193	-0.18404					86	28	4	0	0	0	0.014907	4	5303	5293;5303;5315;5335		162.31	88.331	1	6318200			91500	6721	63435	63541	102290;102291;102292;102293	102291					-0.10747146889411852
YTDVPFHNQY	10	Unmodified	_YTDVPFHNQY_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	642.2877807617188	2	642.288202	1282.56185	-2.0243	-0.0013002	1.7492	0.0011235	-0.27509	-0.00017669	642.289320595578	52.155	0.97246	51.886	51.62	52.593	-0.26903					80	25	5	0	0	0	0.014535	1	5397	5397		167.23	89.911	1	6685800			91501	2634	63436	63542	102294	102294					-0.06812667741610312
YTDVPFHNQY	10	Unmodified	_YTDVPFHNQY_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	642.288202	1282.56185	-1.8497	-0.0011881	1.6701	0.0010727	-0.17962	-0.00011537	642.2891993514052	51.856	0.97263	51.737	51.468	52.44	-0.11875	-0.069219	0.00048237	NaN	167.23	81	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6720800			91502	2634	63436	63542							-0.06812667741610312
YTDVPFHNQY	10	Unmodified	_YTDVPFHNQY_					0	0	0		ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	ENSG00000105088|ENST00000264833|OLFM2	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	642.288202	1282.56185	-0.17064	-0.0001096	-0.37394	-0.00024018	-0.54459	-0.00034978	642.2879057558158	51.979	0.82654	51.795	51.487	52.314	-0.18404	-0.010953	-0.0021434	NaN	167.23	69	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6436100			91503	2634	63436	63542							-0.06812667741610312
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.737548828125	2	502.737814	1003.46108	-0.369	-0.00018551	-0.1734	-8.7176E-05	-0.5424	-0.00027269	502.7377779403743	36.264	1.998	36.059	35.786	37.784	-0.20518					118	52	3	0	0	0	0.095325	5	2808	2808;2818;2830;2842;2854		161.9	67.04	1	52671000			91504	38096	63437	63543	102295;102296;102297;102298;102299	102295					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	502.7376403808594	2	502.737814	1003.46108	0.075917	3.8166E-05	-0.7471	-0.00037559	-0.67118	-0.00033743	502.7374964502624	36.249	2.056	36.032	35.746	37.802	-0.21661					124	53	3	0	0	0	0.061055	5	2823	2799;2811;2823;2835;2847		171.38	97.41	1	54197000			91505	38096	63437	63543	102300;102301;102302;102303;102304	102302					-0.04051699724482205
YTDVSTRY	8	Unmodified	_YTDVSTRY_					0	0	0		TMX2-CTNND1|2|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|1|fusion;nc|ENSG00000213593|Q9Y320-2|TMX2;ENSG00000213593|ENST00000278422|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF	TMX2-CTNND1|2|fusion	TMX2-CTNND1|2|fusion	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	502.7375793457031	2	502.737814	1003.46108	0.65484	0.00032921	-1.5318	-0.00077011	-0.877	-0.0004409	502.73708636458167	36.124	2.023	35.926	35.641	37.664	-0.19829					119	52	3	0	0	0	0.11183	7	2777	2777;2787;2799;2811;2823;2837;2851		157.33	91.526	1	51887000			91506	38096	63437	63543	102305;102306;102307;102308;102309;102310;102311	102305					-0.04051699724482205
YTEAIVEMY	9	Oxidation (M)	_YTEAIVEM(Oxidation (M))Y_		YTEAIVEM(1)Y		YTEAIVEM(94)Y	0	0	1		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	567.7546997070312	2	567.754815	1133.49508	-0.84593	-0.00048028	0.9289	0.00052739	0.082972	4.7108E-05	567.7550482915512	60.792	0.71746	60.616	60.362	61.08	-0.1761					46	17	4	0	0	0	0.17455	1	6793	6793		94.006	33.034	1	1327400			91507	2661	63438	63544	102312	102312		101			-0.06633039347752856
YTEAIVEMY	9	Oxidation (M)	_YTEAIVEM(Oxidation (M))Y_					0	0	1		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MATCH-MSMS	OPSCC_40_ClassI_Rep-1	4		2	567.754815	1133.49508	-0.19857	-0.00011274	0.328	0.00018622	0.12942	7.3481E-05	567.754675064575	60.934	0.71191	60.728	60.421	61.133	-0.20599	0.029375	-0.0004297	NaN	94.006	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1074200			91508	2661	63438	63544				101			-0.06633039347752856
YTEAIVEMY	9	Oxidation (M)	_YTEAIVEM(Oxidation (M))Y_					0	0	1		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	567.754815	1133.49508	-0.82282	-0.00046716	0.72874	0.00041375	-0.094075	-5.3412E-05	567.754941778248	61.006	0.8408	60.752	60.463	61.304	-0.25373	0.053336	2.5354E-05	NaN	94.006	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1268600			91509	2661	63438	63544				101			-0.06633039347752856
YTEALNIAD	9	Unmodified	_YTEALNIAD_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.N727Tfs*20|1|0.32|ENSG00000122299|chr16:11761943-11761943|T/-|frameshift_variant;ENST00000575170.1_1_16:11869425-11876228:-|nuORF	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	505.2454528808594	2	505.245472	1008.47639	-0.73683	-0.00037228	0.3426	0.00017309	-0.39423	-0.00019918	505.2455137911485	32.947	0.63882	32.781	32.556	33.195	-0.16565					44	15	4	0	0	0	0.19099	1	2296	2296		90.37	13.596	1	1318500			91510	3918	63439	63545	102313	102313					-0.027508329273018717
YTEALVEP	8	Unmodified	_YTEALVEP_					0	0	0			REV__ENST00000399325.2_1_X:133406364-133406679:+|nuORF	REV__ENST00000399325.2_1_X:133406364-133406679:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	460.77392578125	2	461.231833	920.449113	-0.99418	-0.00045855	-2.8517	-0.0013153	-3.8459	-0.0017738	461.23103528021784	24.365	0.44449	24.317	24.088	24.533	-0.047148					19	9	3	0	0	0	0.027866	1	1018	1018		26.796	0	1	69760	+		91511	31825	63440	63546	102314	102314					-0.014293164676701053
YTEDSPGLK	9	Unmodified	_YTEDSPGLK_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	505.2458801269531	2	505.245472	1008.47639	-0.19096	-9.6482E-05	-0.10971	-5.543E-05	-0.30067	-0.00015191	505.24528109463336	33.055	0.76985	32.824	32.544	33.314	-0.23107					46	18	4	0	0	0	0.17822	2	2323	2323;2335		93.195	10.89	1	1381200			91512	2815	63441	63547	102315;102316	102315					-0.027508329272791343
YTEDSPGLK	9	Unmodified	_YTEDSPGLK_					0	0	0		ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	ENSG00000106803|ENST00000223641|SEC61B	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.24560546875	2	505.245472	1008.47639	-0.12777	-6.4554E-05	-0.23036	-0.00011639	-0.35813	-0.00018094	505.24524159113236	33.087	0.67712	32.887	32.609	33.286	-0.20019					46	16	4	0	0	0	0.31037	1	2333	2333		74.255	8.4519	1	1258200			91513	2815	63441	63547	102317	102317					-0.027508329272791343
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	524.7094116210938	2	524.708919	1047.40329	-0.30736	-0.00016127	0.193	0.00010127	-0.11436	-6.0005E-05	524.7089233918584	43.001	1.0762	42.888	42.538	43.614	-0.11253					76	28	5	0	0	0	0.012965	3	3917	3905;3917;3931		172.03	97.514	1	5993200			91514	2948	63442	63548	102318;102319;102320	102319					-0.11852006440562945
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	524.7085571289062	2	524.708919	1047.40329	-0.33716	-0.00017691	0.11656	6.1158E-05	-0.2206	-0.00011575	524.7088974123084	43.172	1.1935	42.935	42.525	43.718	-0.23736					73	31	5	0	0	0	0.028181	3	3927	3916;3927;3948		143.02	59.732	1	5482900			91515	2948	63442	63548	102321;102322;102323	102322					-0.11852006440562945
YTEEDAASY	9	Unmodified	_YTEEDAASY_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	524.708740234375	2	524.708919	1047.40329	-0.62977	-0.00033044	0.32088	0.00016837	-0.30889	-0.00016208	524.7090085480957	43.184	1.0291	42.958	42.636	43.665	-0.22597					75	27	5	0	0	0	0.06122	3	3928	3917;3928;3942		124.59	48.179	1	6796300			91516	2948	63442	63548	102324;102325;102326	102325					-0.11852006440562945
YTEGVKIHAVL	11	Unmodified	_YTEGVKIHAVL_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	615.826904296875	2	615.348063	1228.68157	-0.86348	-0.00053134	-2.2665	-0.0013947	-3.1299	-0.001926	615.3466608053682	50.624	0.72942	50.624	50.376	51.105	0					46	20	3	0	0	0	0.024741	1	5356	5356		45.972	8.1607	1	2004600	+		91517	34932	63443	63549	102327	102327					0.07637945602959917
YTEGVKIHAVL	11	Unmodified	_YTEGVKIHAVL_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	615.8265380859375	2	615.348063	1228.68157	-0.12701	-7.8154E-05	-2.8512	-0.0017545	-2.9782	-0.0018326	615.3462125643009	50.855	0.72971	50.706	50.425	51.155	-0.14915					50	20	4	0	0	0	0.024741	1	5363	5363		45.972	22.93	1	1904100	+		91518	34932	63443	63549	102328	102328					0.07637945602959917
YTEGVKIHAVL	11	Unmodified	_YTEGVKIHAVL_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	615.348063	1228.68157	-0.96983	-0.00059678	-2.0007	-0.0012311	-2.9705	-0.0018279	615.3468380802788	50.491	0.87079	50.572	50.276	51.147	0.08099	-0.056276	0.00046904	NaN	54.776	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1714000	+		91519	34932	63443	63549							0.07637945602959917
YTEGVKIHAVL	11	Unmodified	_YTEGVKIHAVL_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	615.348063	1228.68157	-0.57045	-0.00035102	-2.2361	-0.001376	-2.8065	-0.001727	615.3466426582735	50.678	0.48058	50.566	50.379	50.859	-0.11163	-0.061722	0.00017936	NaN	54.776	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351510	+		91520	34932	63443	63549							0.07637945602959917
YTEGVKIHAVL	11	Unmodified	_YTEGVKIHAVL_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	615.348063	1228.68157	-0.20401	-0.00012554	-2.9269	-0.001801	-3.1309	-0.0019266	615.3461636873225	50.985	0.48576	50.709	50.443	50.929	-0.27643	0.080832	-0.00067077	NaN	54.776	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347470	+		91521	34932	63443	63549							0.07637945602959917
YTEGVKIHAVL	11	Unmodified	_YTEGVKIHAVL_					0	0	0			REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	REV__ENST00000551359.5_1_12:56713025-56726878:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	615.348063	1228.68157	0.24575	0.00015122	-3.5201	-0.0021661	-3.2743	-0.0020149	615.3458146658525	50.771	0.37115	50.59	50.426	50.797	-0.18071	-0.037443	-0.0014008	NaN	54.776	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368020	+		91522	34932	63443	63549							0.07637945602959917
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(110)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.7630004882812	2	574.76264	1147.51073	-0.40293	-0.00023159	0.88821	0.00051051	0.48529	0.00027893	574.7629145052138	69.902	0.87221	69.635	69.287	70.159	-0.26725					59	20	4	0	0	0	0.11848	3	8108	8100;8108;8121		106.42	46.012	1	2618300			91523	4734	63444	63550	102329;102330;102331	102330		189			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(120)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	574.7627563476562	2	574.76264	1147.51073	-0.02895	-1.664E-05	0.44931	0.00025825	0.42036	0.00024161	574.7625497543856	72.551	2.8592	72.274	70.786	73.645	-0.2769					153	68	4	0	0	0	0.062871	5	8525	8489;8502;8513;8525;8536		123.99	61.881	1	899780			91524	4734	63444	63550	102332;102333;102334;102335;102336	102335		189			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(100)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.7628784179688	2	574.76264	1147.51073	-0.14392	-8.272E-05	0.55047	0.00031639	0.40655	0.00023367	574.7627589408737	69.795	0.98575	69.545	69.196	70.182	-0.25063					66	23	4	0	0	0	0.14199	2	8128	8115;8128		101.21	40.808	1	2888400			91525	4734	63444	63550	102337;102338	102338		189			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(130)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.76220703125	2	574.76264	1147.51073	-0.1322	-7.5983E-05	0.42152	0.00024228	0.28932	0.00016629	574.7625508482698	72.585	3.0437	72.321	70.644	73.687	-0.26479					154	73	3	0	0	0	0.040175	5	8521	8498;8508;8521;8533;8546		133.47	62.173	1	925960			91526	4734	63444	63550	102339;102340;102341;102342;102343	102341		189			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(110)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7631225585938	2	574.76264	1147.51073	-0.16591	-9.5357E-05	0.61862	0.00035556	0.45271	0.0002602	574.7627919052245	69.759	1.0595	69.536	69.185	70.245	-0.22245					66	25	4	0	0	0	0.088511	4	8126	8087;8098;8110;8126		114.59	41.966	1	3043400			91527	4734	63444	63550	102344;102345;102346;102347	102347		189			-0.057127528306864406
YTELEAIMY	9	Oxidation (M)	_YTELEAIM(Oxidation (M))Y_		YTELEAIM(1)Y		YTELEAIM(130)Y	0	0	1		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	574.7620849609375	2	574.76264	1147.51073	-0.5075	-0.00029169	0.55813	0.00032079	0.050636	2.9104E-05	574.7626225518469	72.374	2.9278	72.176	70.667	73.595	-0.19811					144	70	3	0	0	0	0.049708	4	8515	8467;8490;8502;8515		128.82	57.52	1	1103400			91528	4734	63444	63550	102348;102349;102350;102351	102351		189			-0.057127528306864406
YTELEAIMY	9	Unmodified	_YTELEAIMY_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	566.7652587890625	2	566.765183	1131.51581	0.57814	0.00032767	-0.63728	-0.00036119	-0.059139	-3.3518E-05	566.7646365958454	79.758	1.4074	79.512	79.153	80.561	-0.2465					61	33	4	0	0	0	0.14199	2	9529	9529;9542		101.21	38.691	1	2826300			91529	4734	63444	63551	102352;102353	102352					-0.04468448968054872
YTELEAIMY	9	Unmodified	_YTELEAIMY_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	566.76513671875	2	566.765183	1131.51581	0.30941	0.00017536	-0.6803	-0.00038557	-0.37089	-0.00021021	566.7646249869949	79.666	1.8227	79.447	79.118	80.94	-0.21922					66	43	3	0	0	0	0.062871	2	9546	9546;9558		123.99	47.142	1	2758600			91530	4734	63444	63551	102354;102355	102354					-0.04468448968054872
YTELEAIMY	9	Unmodified	_YTELEAIMY_					0	0	0		ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000512029.1_1_5:118832263-118835290:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	566.7652587890625	2	566.765183	1131.51581	0.10018	5.6779E-05	-0.3156	-0.00017887	-0.21542	-0.00012209	566.764829390205	79.577	1.7009	79.426	79.067	80.768	-0.15051					82	40	5	0	0	0	0.033883	2	9517	9517;9529		138.48	67.102	1	3045000			91531	4734	63444	63551	102356;102357	102356					-0.04468448968054872
YTENGGGQGY	10	Unmodified	_YTENGGGQGY_					0	0	0		ENSG00000174059|ENST00000310833|CD34	ENSG00000174059|ENST00000310833|CD34	ENSG00000174059|ENST00000310833|CD34	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	523.2510375976562	2	523.214703	1044.41485	-0.32729	-0.00017124	4.3672	0.002285	4.0399	0.0021137	523.2174631990782	35.177	0.19135	34.965	34.847	35.038	-0.21246					6	4	2	0	0	0	0.03519	1	2637	2637		66.429	3.123	1	26691			91532	8438	63445	63552	102358	102358					-0.10557764626537391
YTEPKTLGCT	10	Unmodified	_YTEPKTLGCT_					0	0	0			REV__ENSG00000196878|ENST00000356082|LAMB3	REV__ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	555.799560546875	2	556.768257	1111.52196	0.25521	0.00014209	-0.14536	-8.0929E-05	0.10985	6.1163E-05	556.7679993464391	40.842	0.70512	40.842	40.587	41.292	0					42	19	3	0	0	0	0.03519	1	3629	3629		58.23	20.418	1	1132300	+		91533	28234	63446	63553	102359	102359					-0.02933930736548973
YTERRQPLY	9	Unmodified	_YTERRQPLY_					0	0	0		nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	nc|ENSG00000113719|Q969X5-2|ERGIC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	409.91558837890625	3	409.21565	1224.62512	0.56574	0.00023151	-0.63761	-0.00026092	-0.071867	-2.9409E-05	409.21530836522203	32.115	0.73825	31.922	31.597	32.335	-0.19261					54	16	4	0	0	0	0.024447	1	2185	2185		40.778	26.641	1	723420			91534	3321	63447	63554	102360	102360					0.021793177662857488
YTETKIKKLA	10	Unmodified	_YTETKIKKLA_					0	0	0			REV__ENSG00000068784|ENST00000263736|SRBD1	REV__ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	597.8568115234375	2	597.858264	1193.70197	-1.6739	-0.0010008	-1.798	-0.001075	-3.4719	-0.0020757	597.857013923144	92.569	3.0183	92.569	91.641	94.659	0					282	72	5	0	0	0	1.0992	1	11835	11835		32.812	1.2826	1	4454900	+		91535	20387	63448	63555	102361	102361					0.11287116262769814
YTETKIKKLA	10	Unmodified	_YTETKIKKLA_					0	0	0			REV__ENSG00000068784|ENST00000263736|SRBD1	REV__ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	597.8564453125	2	597.858264	1193.70197	-0.69485	-0.00041542	-2.7318	-0.0016332	-3.4267	-0.0020487	597.8564283407957	92.559	3.3563	92.566	91.7	95.056	0.0077209					240	80	4	0	0	0	1.0508	1	11725	11725		39.253	1.4413	1	4386000	+		91536	20387	63448	63555	102362	102362					0.11287116262769814
YTFPGILKW	9	Unmodified	_YTFPGILKW_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	563.2782592773438	2	562.810585	1123.60662	0.26045	0.00014658	0.85236	0.00047972	1.1128	0.0006263	562.8105830808465	81.646	0.92888	81.417	81.105	82.034	-0.2289					32	21	2	0	0	0	0.024319	1	9815	9815		47.657	11.211	1	295610			91537	5969	63449	63556	102363	102363					0.049758078623881374
YTFPGILKW	9	Unmodified	_YTFPGILKW_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	563.2774658203125	2	562.810585	1123.60662	-0.67681	-0.00038092	0.79485	0.00044735	0.11805	6.6437E-05	562.8109039540174	81.577	0.63076	81.435	81.11	81.74	-0.14248					32	14	3	0	0	0	0.024319	1	9805	9805		56.721	27.551	1	290840			91538	5969	63449	63556	102364	102364					0.049758078623881374
YTFRYPLSL	9	Unmodified	_YTFRYPLSL_					0	0	0		chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11;ENSG00000099953|ENST00000215743|MMP11;ENST00000465385.5_1_22:24122222-24125728:+|nuORF	chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	580.3106079101562	2	580.310949	1158.60735	-0.012654	-7.3432E-06	0.6556	0.00038045	0.64294	0.00037311	580.3111152288582	74.379	0.83282	74.103	73.887	74.72	-0.27573					49	19	4	0	0	0	0.2101	1	8770	8770		87.696	32.92	1	1608000			91539	384	63450	63557	102365	102365					0.03438602511437239
YTFRYPLSL	9	Unmodified	_YTFRYPLSL_					0	0	0		chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11;ENSG00000099953|ENST00000215743|MMP11;ENST00000465385.5_1_22:24122222-24125728:+|nuORF	chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	chr22:23779368-23780359|476|26.77|0.78|5.11|+|ENST00000437086|MMP11,MMP11	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	580.3101196289062	2	580.310949	1158.60735	-0.43924	-0.00025489	1.1335	0.00065778	0.69425	0.00040288	580.3113900251544	74.359	0.87286	74.095	73.859	74.732	-0.26326					46	20	4	0	0	0	0.18994	1	8781	8781		90.601	30.483	1	1617200			91540	384	63450	63557	102366	102366					0.03438602511437239
YTGLLLEQS	9	Unmodified	_YTGLLLEQS_					0	0	0			REV__nc|ENSG00000148835|Q15542-2|TAF5	REV__nc|ENSG00000148835|Q15542-2|TAF5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	512.27197265625	2	512.27149	1022.52843	0.023925	1.2256E-05	-0.9402	-0.00048164	-0.91628	-0.00046938	512.2708703320989	106.42	1.3053	106.42	106.01	107.32	-0.0013123					103	41	5	0	0	0	0.89441	1	13631	13631		32.812	0.85756	1	6386000	+		91541	24639	63451	63558	102367	102367					0.018063304864767815
YTGTQCERCA	10	Carbamidomethyl (C)	_YTGTQCERC(Carbamidomethyl (C))A_	YTGTQC(0.079)ERC(0.921)A		YTGTQC(-11)ERC(11)A		0	1	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.I2854Lfs*4|1|0.06|ENSG00000053747|chr18:23931184-23931185|-/CTGAATTT|frameshift_variant;LAMA3|p.N2871Ifs*5|1|0.35|ENSG00000053747|chr18:23932193-23932193|A/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	594.7442016601562	2	594.742247	1187.46994	-0.91712	-0.00054545	3.6127	0.0021486	2.6956	0.0016032	594.7443553804925	30.428	1.2078	30.184	29.862	31.07	-0.24415					69	28	4	0	0	0	0.80817	1	1958	1958		60.118	8.9256	2	3128400			91542	1163	63452	63559	102368	102368	19				-0.11629417421954713
YTGVKKDSL	9	Unmodified	_YTGVKKDSL_					0	0	0			REV__ENSG00000182621|ENST00000338037|PLCB1	REV__ENSG00000182621|ENST00000338037|PLCB1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7767639160156	2	505.779482	1009.54441	0.6738	0.0003408	0.64284	0.00032513	1.3166	0.00066593	505.779974591259	51.184	0.34544	51.004	50.797	51.143	-0.18071					11	8	2	0	0	0	0.024457	1	5253	5253		37.159	20.686	1	122360	+		91543	27498	63453	63560	102369	102369					0.04002036723386482
YTHEVVTLW	9	Unmodified	_YTHEVVTLW_					0	0	0		ENSG00000170312|ENST00000395284|CDK1;ENST00000554619.5_1_12:56361683-56363594:+|nuORF;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000123374|ENST00000266970|CDK2;ENSG00000250506|ENST00000448471|CDK3	ENSG00000170312|ENST00000395284|CDK1	ENSG00000170312|ENST00000395284|CDK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	574.2924194335938	2	574.292756	1146.57096	-1.1128	-0.00063905	0.55847	0.00032073	-0.55429	-0.00031833	574.2929320633225	65.002	0.8512	64.799	64.539	65.39	-0.20254					60	20	4	0	0	0	0.25032	1	7421	7421		82.305	8.05	1	8144400			91544	8022	63454	63561	102370	102370					0.003537256147183143
YTHLLFSAAS	10	Unmodified	_YTHLLFSAAS_					0	0	0			REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF	REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	554.808837890625	2	555.284931	1108.55531	-0.017326	-9.6211E-06	-3.426	-0.0019024	-3.4433	-0.001912	555.2827768886326	46.075	0.26522	45.978	45.849	46.115	-0.096649					10	6	3	0	0	0	0.03519	1	4404	4404		42.396	0	1	90992	+		91545	31786	63455	63562	102371	102371					0.005374390976612631
YTHRRRRWVRL	11	Unmodified	_YTHRRRRWVRL_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	534.3165283203125	3	533.646553	1597.91783	-1.0738	-0.00057303	-1.7687	-0.00094388	-2.8425	-0.0015169	533.9800576578648	44.222	0.31406	44.118	43.925	44.239	-0.10468					11	8	2	0	0	0	0.024865	1	4086	4086		12.433	6.4318	1	128910			91546	4917	63456	63563	102372	102372					0.14278735010611854
YTIDLLLVDI	10	Unmodified	_YTIDLLLVDI_					0	0	0		ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	589.343505859375	2	589.339372	1176.66419	0.92698	0.00054631	4.3739	0.0025777	5.3009	0.003124	589.3421587838484	90.729	2.3663	90.74	89.38	91.747	0.011276					200	56	6	0	0	0	1.0992	2	11362	11329;11362		32.812	4.7309	1	4746700			91547	2637	63457	63564	102373;102374	102374					0.08292605277301845
YTILRSPLI	9	Unmodified	_YTILRSPLI_					0	0	0		nc|ENSG00000140832|Q96A59-2|MARVELD3	nc|ENSG00000140832|Q96A59-2|MARVELD3	nc|ENSG00000140832|Q96A59-2|MARVELD3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	538.328125	2	538.329142	1074.64373	-0.46158	-0.00024848	-3.3303	-0.0017928	-3.7919	-0.0020413	538.3272442919981	99.585	2.2678	99.595	98.649	100.92	0.010231					145	54	7	0	0	0	0.89441	1	12823	12823		32.812	2.3088	1	22988000			91548	18337	63458	63565	102375	102375					0.10939479408125408
YTILTSSA	8	Unmodified	_YTILTSSA_					0	0	0		nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	428.2619934082031	2	428.226551	854.438549	-0.97869	-0.0004191	2.9525	0.0012644	1.9739	0.00084526	428.22847514791664	90.037	1.1963	90.037	89.774	90.97	0					45	28	3	0	0	0	0.027866	1	11434	11434		40.573	13.777	1	217400			91549	18541	63459	63566	102376	102376					0.0055070087789772515
YTINERHL	8	Unmodified	_YTINERHL_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	524.2680053710938	2	523.274898	1044.53524	0.3084	0.00016138	-1.2675	-0.00066324	-0.95909	-0.00050187	523.2742507756008	43.265	0.61893	43.296	42.939	43.558	0.030827					25	16	2	0	0	0	0.027866	1	3973	3973		55.504	7.5886	1	244390	+	+	91550	19589	63460	63567	102377	102377					0.014756881576886371
YTIPISNPL	9	Unmodified	_YTIPISNPL_					0	0	0		ENST00000598118.1_1_19:35506495-35517042:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	ENST00000598118.1_1_19:35506495-35517042:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	510.2553405761719	2	509.2844	1016.55425	-0.44505	-0.00022666	-0.80013	-0.00040749	-1.2452	-0.00063415	509.28441602639595	91.85	0.43566	91.726	91.542	91.978	-0.12341					10	9	2	0	0	0	0.024457	1	11267	11267		37.159	26.894	1	17404			91551	1906	63461	63568	102378	102378					0.04663224728756177
YTIVQFLSL	9	Unmodified	_YTIVQFLSL_					0	0	0			REV__ENST00000206595.10_1_14:31062768-31066635:+|nuORF	REV__ENST00000206595.10_1_14:31062768-31066635:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	542.3125610351562	2	542.307875	1082.6012	-0.20541	-0.00011139	2.0918	0.0011344	1.8864	0.001023	542.3090998846038	70.845	1.1337	70.63	70.435	71.568	-0.21424					63	27	4	0	0	0	1.0365	1	8239	8239		12.959	0.75233	1	4104200	+		91552	29302	63462	63569	102379	102379					0.06320084279923321
YTKEGSHI	8	Unmodified	_YTKEGSHI_					0	0	0			REV__ENSG00000198482|ENST00000359798|ZNF808;REV__ENSG00000186448|ENST00000344387|ZNF197	REV__ENSG00000198482|ENST00000359798|ZNF808	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.2269592285156	2	467.735074	933.455596	-0.090858	-4.2497E-05	0.23712	0.00011091	0.14626	6.8411E-05	467.73333983237035	49.373	0.23067	49.273	49.147	49.377	-0.1008					7	5	2	0	0	0	0.027866	1	4950	4950		45.952	0	1	44191	+		91553	28426;27857	63463	63570	102380	102380					-0.013793785162761196
YTKEIIVLTK	10	Unmodified	_YTKEIIVLTK_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-4|PATL1	REV__nc|ENSG00000166889|Q86TB9-4|PATL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	604.3657836914062	2	604.368464	1206.72238	0.12428	7.5109E-05	-3.0499	-0.0018433	-2.9256	-0.0017682	604.3664739724837	103.51	1.978	103.34	102.95	104.93	-0.17034					123	54	5	0	0	0	1.126	1	12912	12912		19.104	0	1	4482300	+		91554	26075	63464	63571	102381	102381					0.12728286922538246
YTKFGIEEED	10	Unmodified	_YTKFGIEEED_					0	0	0		nc|ENSG00000108423|Q9UJT1-6|TUBD1;nc|ENSG00000108423|Q9UJT1-5|TUBD1;nc|ENSG00000108423|Q9UJT1-2|TUBD1;ENSG00000108423|ENST00000325752|TUBD1;nc|ENSG00000108423|Q9UJT1-3|TUBD1;nc|ENSG00000108423|Q9UJT1-4|TUBD1	nc|ENSG00000108423|Q9UJT1-6|TUBD1	nc|ENSG00000108423|Q9UJT1-6|TUBD1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	409.8863525390625	3	410.855676	1229.5452	0.44759	0.0001839	4.3049	0.0017687	4.7525	0.0019526	410.85717428799313	34.688	0.35424	34.688	34.59	34.944	0					14	8	2	0	0	0	0.03519	1	2622	2622		42.338	0.91146	1	85590			91555	2896	63465	63572	102382	102382					-0.060392134182166046
YTKFQIATW	9	Unmodified	_YTKFQIATW_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.3035278320312	2	579.303124	1156.5917	-0.51723	-0.00029963	0.34191	0.00019807	-0.17532	-0.00010156	579.3032060812658	65.157	0.89941	64.923	64.607	65.507	-0.2345					63	21	4	0	0	0	0.01118	3	7420	7420;7430;7442		271.48	147.18	1	3932000			91556	1155	63466	63573	102383;102384;102385	102383					0.0196631599437751
YTKFQIATW	9	Unmodified	_YTKFQIATW_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.3035888671875	2	579.303124	1156.5917	-1.8078	-0.0010473	1.4066	0.00081486	-0.40116	-0.00023239	579.3038343279413	65.164	0.81493	64.961	64.617	65.432	-0.20254					62	19	4	0	0	0	0.01118	3	7424	7424;7434;7446		291.73	188.96	1	4254300			91557	1155	63466	63573	102386;102387;102388	102386					0.0196631599437751
YTKFQIATW	9	Unmodified	_YTKFQIATW_					0	0	0		ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	ENSG00000052802|ENST00000261507|MSMO1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.3031005859375	2	579.303124	1156.5917	-0.92709	-0.00053706	0.57009	0.00033025	-0.357	-0.00020681	579.3033691268466	65.196	0.85302	64.942	64.623	65.476	-0.25348					53	20	3	0	0	0	0.020354	3	7425	7415;7425;7438		291.73	170.86	1	4406800			91558	1155	63466	63573	102389;102390;102391	102390					0.0196631599437751
YTKILQALN	9	Unmodified	_YTKILQALN_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	531.776611328125	2	532.310949	1062.60735	-0.48877	-0.00026018	0.020948	1.1151E-05	-0.46782	-0.00024903	532.3107524346909	81.637	2.1532	81.506	80.936	83.089	-0.13075					92	51	3	0	0	0	0.024288	1	10347	10347		71.877	0	1	904200			91559	8255	63467	63574	102392	102392					0.0785460251142922
YTKKKAIQL	9	Unmodified	_YTKKKAIQL_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	546.842041015625	2	546.842416	1091.67028	-0.15909	-8.6997E-05	-4.2879	-0.0023448	-4.447	-0.0024318	546.8401297516974	99.64	1.3525	99.64	99.179	100.53	0					98	32	6	0	0	0	0.96322	1	12839	12839		27.882	0	1	11254000			91560	9351	63468	63575	102393	102393					0.12811168299458586
YTKLIQRL	8	Unmodified	_YTKLIQRL_					0	0	0			REV__ENST00000357727.6_1_7:28452319-28452490:+|nuORF	REV__ENST00000357727.6_1_7:28452319-28452490:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	517.819580078125	2	517.821484	1033.62842	-0.45999	-0.00023819	-3.4532	-0.0017881	-3.9132	-0.0020263	517.8195675051055	91.848	1.1064	91.84	91.451	92.558	-0.0082932					74	26	4	0	0	0	1.043	1	11623	11623		30.504	2.2494	1	1510800	+		91561	30840	63469	63576	102394	102394					0.1129461261095912
YTKSPPLIG	9	Unmodified	_YTKSPPLIG_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	487.2931823730469	2	488.279118	974.543683	-0.90227	-0.00044056	0.96824	0.00047277	0.065971	3.2212E-05	488.2794345456096	89.414	0.80065	89.252	88.973	89.774	-0.1626					39	18	3	0	0	0	0.024535	1	10988	10988		12.207	0	1	311730	+		91562	22933	63470	63577	102395	102395					0.05539242074348749
YTKTLLFPV	9	Unmodified	_YTKTLLFPV_					0	0	0		ENST00000426647.2_1_7:32852458-32867019:+|nuORF	ENST00000426647.2_1_7:32852458-32867019:+|nuORF	ENST00000426647.2_1_7:32852458-32867019:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	541.2940063476562	2	541.318243	1080.62193	0.3559	0.00019265	1.1429	0.00061866	1.4988	0.00081132	541.318634283058	59.535	0.29008	59.335	59.172	59.463	-0.20016					11	7	2	0	0	0	0.024374	1	6756	6756		40.778	0	1	114850			91563	14092	63471	63578	102396	102396					0.0848467465957583
YTKVPGQAIL	10	Unmodified	_YTKVPGQAIL_					0	0	0			REV__AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant	REV__AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	545.3163452148438	2	545.318774	1088.623	-0.46982	-0.0002562	-3.4678	-0.0018911	-3.9376	-0.0021473	545.3167692338234	89.137	3.4289	89.153	88.236	91.665	0.015907					285	81	4	0	0	0	1.0992	1	11146	11146		32.812	2.3088	1	12792000	+		91564	19133	63472	63579	102397	102397					0.08222889028479585
YTKVPGQAIL	10	Unmodified	_YTKVPGQAIL_					0	0	0			REV__AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant	REV__AMPD1|p.Q305Rfs*12|1|0.19|ENSG00000116748|chr1:114679662-114679662|G/-|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	545.3162231445312	2	545.318774	1088.623	-0.35128	-0.00019156	-3.542	-0.0019315	-3.8933	-0.0021231	545.3167215715578	87.325	3.0161	87.146	85.231	88.247	-0.17874					231	71	4	0	0	0	1.1266	1	10455	10455		29.17	3.596	1	4936700	+		91565	19133	63472	63579	102398	102398					0.08222889028479585
YTLALRFGSQ	10	Unmodified	_YTLALRFGSQ_					0	0	0		nc|ENSG00000128656|P15882-3|CHN1;ENSG00000128656|ENST00000409900|CHN1	nc|ENSG00000128656|P15882-3|CHN1	nc|ENSG00000128656|P15882-3|CHN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	578.3101806640625	2	578.31148	1154.60841	-1.753	-0.0010138	-0.28279	-0.00016354	-2.0358	-0.0011773	578.3112348551637	109.57	0.4404	109.43	109.25	109.69	-0.13821					35	21	2	0	0	0	1.1286	1	13480	13480		25.574	2.0514	1	1541100			91566	4307	63473	63580	102399	102399					0.03728816880334307
YTLAVLVTL	9	Unmodified	_YTLAVLVTL_					0	0	0			REV__nc|ENSG00000133027|Q9UBM1|PEMT	REV__nc|ENSG00000133027|Q9UBM1|PEMT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	497.32855224609375	2	496.804968	991.595384	0.84832	0.00042145	3.0532	0.0015168	3.9015	0.0019383	496.8063668123815	105.73	0.68171	105.73	105.36	106.04	0					34	21	2	0	0	0	0.024541	1	13566	13566		11.511	0	1	83320	+		91567	23339	63474	63581	102400	102400					0.09924985768248007
YTLAVLVTL	9	Unmodified	_YTLAVLVTL_					0	0	0			REV__nc|ENSG00000133027|Q9UBM1|PEMT	REV__nc|ENSG00000133027|Q9UBM1|PEMT	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	496.804968	991.595384	0.052338	2.6002E-05	3.9848	0.0019797	4.0372	0.0020057	496.8067034892028	105.69	0.6366	105.69	105.4	106.04	-0.0013123	-0.017071	0.00066911	NaN	16.473	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97612	+		91568	23339	63474	63581							0.09924985768248007
YTLDRHSLY	9	Unmodified	_YTLDRHSLY_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	584.2694091796875	2	584.293288	1166.57202	-0.31661	-0.00018499	2.2873	0.0013365	1.9707	0.0011515	584.2944624920806	77.961	0.50533	77.699	77.399	77.904	-0.26202					14	11	2	0	0	0	0.023417	1	9254	9254		68.787	2.3575	1	115440			91569	9025	63475	63582	102401	102401					-0.004600600163712443
YTLDVVQEW	9	Unmodified	_YTLDVVQEW_					0	0	0			REV__ENSG00000126107|ENST00000372172|HECTD3	REV__ENSG00000126107|ENST00000372172|HECTD3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	576.7820434570312	2	576.782222	1151.54989	-0.24821	-0.00014316	0.31789	0.00018335	0.069679	4.0189E-05	576.7822400949027	65.926	1.9371	65.684	64.6	66.538	-0.24145					163	49	4	0	0	0	0.89441	1	7604	7604		32.812	0	1	1844500	+		91570	22879	63476	63583	102402	102402					-0.019822844848022214
YTLGCLSHSDI	11	Unmodified	_YTLGCLSHSDI_					0	0	0		ENST00000534532.6_1_11:134094237-134094411:-|nuORF	ENST00000534532.6_1_11:134094237-134094411:-|nuORF	ENST00000534532.6_1_11:134094237-134094411:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	603.8397216796875	2	604.784438	1207.55432	-0.22519	-0.00013619	0.2606	0.00015761	0.035414	2.1418E-05	604.7843649240294	80.437	0.90083	80.291	79.913	80.813	-0.146					41	21	3	0	0	0	0.024731	1	9610	9610		35.152	10.633	1	432040			91571	16331	63477	63584	102403	102403					-0.041151433335471665
YTLGKQEPS	9	Unmodified	_YTLGKQEPS_					0	0	0			REV__ENSG00000100031|ENST00000400382|GGT1	REV__ENSG00000100031|ENST00000400382|GGT1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	511.7829895019531	2	511.761289	1021.50803	-0.77172	-0.00039494	-3.2332	-0.0016546	-4.0049	-0.0020496	511.7593250321761	53.306	0.66151	53.159	52.758	53.42	-0.14724					32	16	3	0	0	0	0.024405	1	5735	5735		35.618	0	1	365960	+		91572	21036	63478	63585	102404	102404					-0.0018684017333043812
YTLGVAWLL	9	Unmodified	_YTLGVAWLL_					0	0	0		ENST00000508722.5_1_5:34839321-34867279:+|nuORF;nc|ENSG00000205838|Q6PF05-2|TTC23L;ENSG00000205838|ENST00000505624|TTC23L;nc|ENSG00000205838|Q6PF05-3|TTC23L	ENST00000508722.5_1_5:34839321-34867279:+|nuORF	ENST00000508722.5_1_5:34839321-34867279:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.2973022460938	2	518.29731	1034.58007	0.33697	0.00017465	-0.73697	-0.00038197	-0.4	-0.00020732	518.2968087323576	102.58	1.456	102.41	101.78	103.24	-0.17178					76	35	4	0	0	0	0.33184	1	12721	12721		71.378	2.5911	1	4621500			91573	15787	63479	63586	102405	102405					0.06416118971037577
YTLGVKQLL	9	Unmodified	_YTLGVKQLL_					0	0	0		ENST00000458319.1_1_7:14230834-14230924:+|nuORF	ENST00000458319.1_1_7:14230834-14230924:+|nuORF	ENST00000458319.1_1_7:14230834-14230924:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	517.8153686523438	2	517.815867	1033.61718	0.26231	0.00013583	-0.54314	-0.00028125	-0.28083	-0.00014542	517.8154504120761	64.237	0.52151	64.282	64.081	64.603	0.045502					40	13	4	0	0	0	0.27161	1	7485	7485		79.451	0	1	3136400			91574	14623	63480	63587	102406	102406					0.10171790516801593
YTLLKCSIL	9	Unmodified	_YTLLKCSIL_					0	0	0			REV__ENSG00000214654|ENST00000689072|B3GALT9	REV__ENSG00000214654|ENST00000689072|B3GALT9	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	527.3059692382812	2	527.304278	1052.594	0.95797	0.00050514	0.22784	0.00012014	1.1858	0.00062528	527.304365478722	98.029	1.3703	97.904	97.417	98.787	-0.12414					55	32	3	0	0	0	0.92825	1	12129	12129		30.504	0	1	608280	+		91575	28782	63481	63588	102407	102407					0.06981028407835765
YTLLKCSIL	9	Unmodified	_YTLLKCSIL_					0	0	0			REV__ENSG00000214654|ENST00000689072|B3GALT9	REV__ENSG00000214654|ENST00000689072|B3GALT9	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	527.3052368164062	2	527.304278	1052.594	-0.075704	-3.9919E-05	1.0682	0.00056328	0.99253	0.00052337	527.3048777539068	98.108	1.4566	97.942	97.397	98.853	-0.16521					71	34	3	0	0	0	0.85329	1	12126	12126		35.618	11.099	1	571960	+		91576	28782	63481	63588	102408	102408					0.06981028407835765
YTLRQLDN	8	Unmodified	_YTLRQLDN_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	511.2818908691406	2	511.766906	1021.51926	-0.47452	-0.00024284	0.67063	0.00034321	0.19611	0.00010036	511.7670316907027	95.97	2.673	95.97	94.831	97.504	0					103	61	2	0	0	0	0.027866	1	12220	12220		30.504	5.0535	1	194610			91577	6343	63482	63589	102409	102409					0.009359819207929831
YTLSFLKRQ	9	Unmodified	_YTLSFLKRQ_					0	0	0		nc|ENSG00000133895|O00255-1|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-1|MEN1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	578.2097778320312	2	578.329673	1154.64479	-0.47445	-0.00027439	-0.22488	-0.00013006	-0.69933	-0.00040444	578.3293780027067	55.993	0.35787	55.777	55.562	55.92	-0.21607					16	9	2	0	0	0	0.024323	1	6036	6036		63.306	24.053	1	221490			91578	4739	63483	63590	102410	102410					0.07365693777023807
YTLTGVLIP	9	Unmodified	_YTLTGVLIP_					0	0	0		ENSG00000136011|ENST00000388887|STAB2;STAB2|p.F1620Sfs*18|1|0.24|ENSG00000136011|chr12:103727273-103727283|TTCGTGAAAGA/-|frameshift_variant;STAB2|p.T1102Qfs*18|1|0.1|ENSG00000136011|chr12:103692818-103692818|A/-|frameshift_variant;STAB2|p.T1467Pfs*94|1|0.28|ENSG00000136011|chr12:103712428-103712428|G/-|frameshift_variant	ENSG00000136011|ENST00000388887|STAB2	ENSG00000136011|ENST00000388887|STAB2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	488.7901611328125	2	488.789318	975.564084	0.74427	0.00036379	-2.0168	-0.00098579	-1.2725	-0.000622	488.7885781983941	105.91	0.35692	105.75	105.52	105.87	-0.16133					26	14	2	0	0	0	0.83071	1	13181	13181		37.159	7.3176	1	201460			91579	4969	63484	63591	102411	102411					0.075324127341446
YTLVDREE	8	Unmodified	_YTLVDREE_					0	0	0		nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1	nc|ENSG00000101384|P78504-2|JAG1	nc|ENSG00000101384|P78504-2|JAG1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	512.7693481445312	2	512.750921	1023.48729	-1.2444	-0.00063809	-3.0105	-0.0015436	-4.2549	-0.0021817	512.7495106097925	38.878	0.48951	38.714	38.554	39.044	-0.16459					20	13	3	0	0	0	0.027866	1	3229	3229		76.774	17.992	1	180160			91580	2320	63485	63592	102412	102412					-0.023514305530056845
YTMKEVLFY	9	Unmodified	_YTMKEVLFY_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	597.2984008789062	2	597.299193	1192.58383	-0.96835	-0.0005784	0.78677	0.00046994	-0.18158	-0.00010846	597.2995589191399	69.74	0.83522	69.472	69.164	69.999	-0.26725					38	19	2	0	0	0	0.22902	3	8085	8085;8098;8112		85.161	24.189	1	2734900			91581	4922	63486	63593	102413;102414;102415	102413					-0.004755793174126666
YTMKEVLFY	9	Unmodified	_YTMKEVLFY_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	597.2989501953125	2	597.299193	1192.58383	-0.48601	-0.00029029	0.24769	0.00014795	-0.23832	-0.00014235	597.2992587816274	69.613	1.0288	69.362	69.075	70.103	-0.25063					43	24	2	0	0	0	0.053401	3	8091	8079;8091;8105		127.46	61.659	1	2791200			91582	4922	63486	63593	102416;102417;102418	102417					-0.004755793174126666
YTMKEVLFY	9	Unmodified	_YTMKEVLFY_					0	0	0		nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-7|MDM2;ENST00000493419.1_1_12:69202221-69210726:+|nuORF	nc|ENSG00000135679|Q00987-10|MDM2	nc|ENSG00000135679|Q00987-10|MDM2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	597.299560546875	2	597.299193	1192.58383	-0.36584	-0.00021852	0.20631	0.00012323	-0.15953	-9.5289E-05	597.2992250876108	69.607	0.90524	69.385	69.103	70.008	-0.22245					41	21	2	0	0	0	0.071379	3	8071	8071;8082;8094		120.87	33.114	1	2870300			91583	4922	63486	63593	102419;102420;102421	102419					-0.004755793174126666
YTMRILPSKL	10	Unmodified	_YTMRILPSKL_					0	0	0			REV__ENSG00000204022|ENST00000371939|LIPJ	REV__ENSG00000204022|ENST00000371939|LIPJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	611.3546752929688	2	611.354834	1220.69511	-0.81332	-0.00049722	2.9276	0.0017898	2.1143	0.0012926	611.3564858274373	94.186	3.3171	94.186	93.387	96.704	0					254	78	5	0	0	0	1.118	1	11927	11927		30.318	1.1477	1	11166000	+		91584	28562	63487	63594	102422	102422					0.09359480110538243
YTMRILPSKL	10	Unmodified	_YTMRILPSKL_					0	0	0			REV__ENSG00000204022|ENST00000371939|LIPJ	REV__ENSG00000204022|ENST00000371939|LIPJ	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	611.3543701171875	2	611.354834	1220.69511	-0.79598	-0.00048662	2.8399	0.0017362	2.0439	0.0012496	611.3564299760457	92.378	2.3635	92.388	91.031	93.394	0.0094147					173	56	4	0	0	0	1.0508	1	11563	11563		39.253	2.8061	1	4189200	+		91585	28562	63487	63594	102423	102423					0.09359480110538243
YTMRILPSKL	10	Unmodified	_YTMRILPSKL_					0	0	0			REV__ENSG00000204022|ENST00000371939|LIPJ	REV__ENSG00000204022|ENST00000371939|LIPJ	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	611.3558349609375	2	611.354834	1220.69511	-0.45812	-0.00028007	2.6555	0.0016234	2.1974	0.0013434	611.3563593464161	94.363	3.3497	94.216	93.392	96.741	-0.14771					297	77	6	0	0	0	1.118	1	11730	11730		30.318	4.7437	1	13365000	+		91586	28562	63487	63594	102424	102424					0.09359480110538243
YTMVIKVSL	9	Unmodified	_YTMVIKVSL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	527.3043823242188	2	527.304278	1052.594	0.57506	0.00030323	0.31886	0.00016814	0.89393	0.00047137	527.3045102353642	98.07	1.4368	97.933	97.377	98.814	-0.13625					64	33	3	0	0	0	0.87448	1	12155	12155		34.173	1.3601	1	643280	+		91587	26900	63488	63595	102425	102425					0.06981028407835765
YTNADPSDY	9	Unmodified	_YTNADPSDY_					0	0	0			REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	523.2513427734375	2	523.209086	1044.40362	-0.29647	-0.00015511	-3.2885	-0.0017206	-3.5849	-0.0018757	523.2078454486461	35.191	0.15043	34.975	34.874	35.024	-0.21555					5	3	2	0	0	0	0.024405	1	2638	2638		53.351	21.397	1	30738	+		91588	27423	63489	63596	102426	102426					-0.11680586720717656
YTNIIRTIL	9	Unmodified	_YTNIIRTIL_					0	0	0		ENSG00000197706|ENST00000343399|OR6C74;ENSG00000187857|ENST00000641576|OR6C75	ENSG00000197706|ENST00000343399|OR6C74;ENSG00000187857|ENST00000641576|OR6C75	ENSG00000197706|ENST00000343399|OR6C74	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	553.8307495117188	2	553.832049	1105.64954	-0.41945	-0.00023231	-3.2453	-0.0017974	-3.6648	-0.0020297	553.8300910738014	101.35	0.94011	101.36	101.13	102.07	0.0090332					52	21	4	0	0	0	0.96906	1	12939	12939		26.693	1.1189	1	801420			91589	10035;9669	63490	63597	102427	102427					0.10094577919812764
YTNPIGRPK	9	Unmodified	_YTNPIGRPK_					0	0	0		KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	KAT6A|p.V944Lfs*15|1|0.06|ENSG00000083168|chr8:41941051-41941051|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	523.2511596679688	2	523.293091	1044.57163	-0.38377	-0.00020083	0.63202	0.00033073	0.24824	0.0001299	523.292979341129	35.002	0.15204	34.815	34.721	34.873	-0.18675					6	3	2	0	0	0	0.024323	1	2602	2602		44.117	17.321	1	77162			91590	1747	63491	63598	102428	102428					0.05112565054423612
YTNSKGKKAIR	11	Unmodified	_YTNSKGKKAIR_					0	0	0		ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	ENSG00000158023|ENST00000288912|CFAP251	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	633.3722534179688	2	633.369861	1264.72517	-0.4938	-0.00031276	-0.85025	-0.00053852	-1.344	-0.00085128	633.36914814624	95.953	3.2881	95.797	94.964	98.252	-0.15646					264	76	5	0	0	0	1.0292	1	12067	12067		30.318	1.1477	1	9845500			91591	6640	63492	63599	102429	102429					0.1033955510006308
YTNSVDVLDGE	11	Unmodified	_YTNSVDVLDGE_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	404.9229431152344	3	404.519064	1210.53536	0.53675	0.00021713	-0.55094	-0.00022287	-0.01419	-5.74E-06	404.5185768606444	26.54	0.70409	26.372	26.019	26.723	-0.16816					43	17	3	0	0	0	0.024771	1	1383	1383		41.08	0	1	542680			91592	10872	63493	63600	102430	102430					-0.061484014236157236
YTNTKARLAK	10	Unmodified	_YTNTKARLAK_					0	0	0			REV__ENSG00000183496|ENST00000329713|MEX3B;REV__ENSG00000176624|ENST00000406189|MEX3C;REV__ENSG00000181588|ENST00000402693|MEX3D	REV__ENSG00000181588|ENST00000402693|MEX3D	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	583.7872314453125	2	583.33803	1164.66151	-0.38603	-0.00022519	3.5716	0.0020834	3.1856	0.0018583	583.3398952033438	66.163	0.47608	65.921	65.748	66.224	-0.24144					19	11	3	0	0	0	0.03519	1	7555	7555		22.58	0	1	125810	+		91593	27411;27035;27577	63494	63601	102431	102431					0.08576194662964554
YTPFKVKIRS	10	Unmodified	_YTPFKVKIRS_					0	0	0		CNTN2|p.E785K|1|0.28|ENSG00000184144|chr1:205069983-205069983|G/A|missense_variant	CNTN2|p.E785K|1|0.28|ENSG00000184144|chr1:205069983-205069983|G/A|missense_variant	CNTN2|p.E785K|1|0.28|ENSG00000184144|chr1:205069983-205069983|G/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	619.869384765625	2	619.866423	1237.71829	0.12405	7.6895E-05	4.447	0.0027565	4.5711	0.0028334	619.8690348589704	92.641	2.377	92.5	91.021	93.398	-0.1413					169	55	5	0	0	0	1.0122	1	11421	11421		44.377	13.874	1	1596200			91594	462	63495	63602	102432	102432					0.10894242219501393
YTPSDRRA	8	Unmodified	_YTPSDRRA_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	482.7770690917969	2	483.243598	964.472643	-1.0778	-0.00052084	-2.818	-0.0013618	-3.8958	-0.0018826	483.2420864632429	44.789	0.95806	44.641	44.19	45.148	-0.1488					57	27	4	0	0	0	0.027866	1	4319	4319		40.573	10.069	1	2663500	+		91595	21472	63496	63603	102433	102433					-0.011014579104767108
YTPYKVTYA	9	Unmodified	_YTPYKVTYA_					0	0	0		ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1;ENST00000478561.5_1_3:49137386-49138086:-|nuORF	ENSG00000172053|ENST00000306125|QARS1	ENSG00000172053|ENST00000306125|QARS1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3041381835938	2	553.281857	1104.54916	-0.73159	-0.00040478	3.832	0.0021202	3.1004	0.0017154	553.2841342999116	92.802	0.59531	92.798	92.479	93.074	-0.0042038					17	13	2	0	0	0	0.024535	1	11725	11725		25.45	1.9275	1	68225			91596	8235	63497	63604	102434	102434					0.001069208661419907
YTQALAALSV	10	Unmodified	_YTQALAALSV_					0	0	0		nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	nc|ENSG00000144357|Q6ZT12-3|UBR3	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	518.7905883789062	2	518.787307	1035.56006	-0.38967	-0.00020216	-1.4656	-0.00076034	-1.8553	-0.00096249	518.786499133802	85.714	0.70549	85.656	85.186	85.891	-0.05761					42	16	4	0	0	0	0.94316	1	10699	10699		51.193	3.2771	1	1403600			91597	5729	63498	63605	102435	102435					0.04370323240414109
YTQCLFPLT	9	Unmodified	_YTQCLFPLT_					0	0	0		ENST00000446198.5_1_7:131188411-131188615:-|nuORF	ENST00000446198.5_1_7:131188411-131188615:-|nuORF	ENST00000446198.5_1_7:131188411-131188615:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	542.3102416992188	2	543.270435	1084.52632	0.22588	0.00012272	-4.2372	-0.0023019	-4.0113	-0.0021792	543.2689754699663	70.577	0.55463	70.577	70.355	70.909	0					21	12	3	0	0	0	0.024436	1	8553	8553		23.042	0	1	135900			91598	14452	63499	63606	102436	102436					-0.012564215229986075
YTQETALTL	9	Unmodified	_YTQETALTL_					0	0	0			REV__nc|ENSG00000121577|Q9HBU9|POPDC2	REV__nc|ENSG00000121577|Q9HBU9|POPDC2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	520.2689208984375	2	520.268947	1038.52334	-0.9196	-0.00047844	0.54997	0.00028613	-0.36963	-0.00019231	520.2690974479854	75.055	0.80529	75.055	74.676	75.481	0					52	20	3	0	0	0	0.23085	1	9193	9193		84.916	2.675	1	3019800	+		91599	36616	63500	63607	102437	102437					0.005620266238565819
YTQIWRVLLHL	11	Unmodified	_YTQIWRVLLHL_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-3|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	481.28387451171875	3	481.281995	1440.82415	0.15022	7.2296E-05	3.1997	0.00154	3.3499	0.0016122	481.2833604720617	101.32	1.8982	101.31	100.65	102.55	-0.0054474					137	43	4	0	0	0	1.0764	1	12844	12844		17.833	0.6664	1	1065800			91600	17112	63501	63608	102438	102438					0.12137578064994159
YTQKLLVP	8	Unmodified	_YTQKLLVP_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	480.8011779785156	2	481.289485	960.564418	-0.67261	-0.00032372	-1.5878	-0.00076421	-2.2604	-0.0010879	481.28848106734694	93.89	0.80312	93.896	93.562	94.365	0.0059891					29	19	2	0	0	0	0.027866	1	11876	11876		12.959	0	1	247090	+		91601	22148	63502	63609	102439	102439					0.0825583245400594
YTQLVWATSSQ	11	Unmodified	_YTQLVWATSSQ_					0	0	0		nc|ENSG00000157335|Q8NCF0-2|CLEC18C;ENST00000569201.6_1_16:70208088-70217386:+|nuORF;ENST00000564976.5_1_16:70208088-70217795:+|nuORF;ENSG00000157335|ENST00000541793|CLEC18C;ENSG00000157322|ENST00000288040|CLEC18A;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B	nc|ENSG00000157335|Q8NCF0-2|CLEC18C	nc|ENSG00000157335|Q8NCF0-2|CLEC18C	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	428.21673583984375	3	428.547065	1282.61937	-0.5279	-0.00022623	-2.2662	-0.00097115	-2.7941	-0.0011974	428.5462297924074	30.065	0.46905	29.887	29.655	30.124	-0.17818					14	10	2	0	0	0	0.024735	1	1861	1861		21.78	1.4654	1	150440			91602	5447	63503	63610	102440	102440					-0.010638255360618132
YTQLVWATSSQ	11	Unmodified	_YTQLVWATSSQ_					0	0	0		nc|ENSG00000157335|Q8NCF0-2|CLEC18C;ENST00000569201.6_1_16:70208088-70217386:+|nuORF;ENST00000564976.5_1_16:70208088-70217795:+|nuORF;ENSG00000157335|ENST00000541793|CLEC18C;ENSG00000157322|ENST00000288040|CLEC18A;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B	nc|ENSG00000157335|Q8NCF0-2|CLEC18C	nc|ENSG00000157335|Q8NCF0-2|CLEC18C	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		3	428.547065	1282.61937	-0.031359	-1.3439E-05	-3.3828	-0.0014497	-3.4142	-0.0014631	428.8804769287751	30.179	0.42128	29.935	29.862	30.284	-0.24415	0.03422	-0.00080819	NaN	16.53	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156280			91603	5447	63503	63610							-0.010638255360618132
YTQLVWATSSQ	11	Unmodified	_YTQLVWATSSQ_					0	0	0		nc|ENSG00000157335|Q8NCF0-2|CLEC18C;ENST00000569201.6_1_16:70208088-70217386:+|nuORF;ENST00000564976.5_1_16:70208088-70217795:+|nuORF;ENSG00000157335|ENST00000541793|CLEC18C;ENSG00000157322|ENST00000288040|CLEC18A;ENSG00000140839|ENST00000682950|CLEC18B;nc|ENSG00000140839|Q6UXF7|CLEC18B	nc|ENSG00000157335|Q8NCF0-2|CLEC18C	nc|ENSG00000157335|Q8NCF0-2|CLEC18C	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		3	428.547065	1282.61937	0.23132	9.9133E-05	-2.6892	-0.0011524	-2.4578	-0.0010533	428.5454954844219	30.03	0.63492	29.881	29.584	30.219	-0.14952	-0.020327	8.3575E-05	NaN	16.53	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143120			91604	5447	63503	63610							-0.010638255360618132
YTQPKAVK	8	Unmodified	_YTQPKAVK_					0	0	0		ENST00000392485.2_1_17:74730766-74730889:-|nuORF	ENST00000392485.2_1_17:74730766-74730889:-|nuORF	ENST00000392485.2_1_17:74730766-74730889:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	468.2269592285156	2	467.77146	933.528367	-0.40823	-0.00019096	0.37056	0.00017334	-0.037666	-1.7619E-05	467.7714812287737	49.213	0.90941	49.112	48.506	49.416	-0.1008					52	23	4	0	0	0	0.027866	1	4950	4950		45.952	0	1	1097600			91605	13417	63504	63611	102441	102441					0.05894375277136987
YTQQLEDL	8	Unmodified	_YTQQLEDL_					0	0	0		ENSG00000092054|ENST00000355349|MYH7	ENSG00000092054|ENST00000355349|MYH7	ENSG00000092054|ENST00000355349|MYH7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	505.2455139160156	2	505.245472	1008.47639	-0.12777	-6.4554E-05	-0.23036	-0.00011639	-0.35813	-0.00018094	505.24524159113236	33.087	0.67712	32.887	32.609	33.286	-0.20019					46	16	4	0	0	0	0.74904	1	2322	2322		63.306	4.5243	1	1258200			91606	1976	63505	63612	102442	102442					-0.02750832927290503
YTQQTKSKNSL	11	Unmodified	_YTQQTKSKNSL_					0	0	0			REV__ENST00000456853.1_1_3:29628670-29781292:+|nuORF	REV__ENST00000456853.1_1_3:29628670-29781292:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	433.54840087890625	3	433.229736	1296.66738	-1.0691	-0.00046319	1.1725	0.00050797	0.10337	4.4784E-05	433.2301998448574	24.853	0.17822	24.813	24.676	24.854	-0.039814					5	3	2	0	0	0	0.024757	1	1094	1094		20.315	0	1	30698	+		91607	32799	63506	63613	102443	102443					0.03091248384021128
YTQRVQQIL	9	Unmodified	_YTQRVQQIL_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	575.8038940429688	2	574.824755	1147.63496	1.0291	0.00059157	1.3753	0.00079056	2.4044	0.0013821	574.8254857887858	71.028	0.33292	70.735	70.585	70.918	-0.29291					12	7	2	0	0	0	0.024427	1	8558	8558		34.173	3.8548	1	122600			91608	8998	63507	63614	102444	102444					0.0670450577167685
YTRDFSLLR	9	Unmodified	_YTRDFSLLR_					0	0	0			REV__TAF5L|p.W411L|1|0.18|ENSG00000135801|chr1:229594835-229594835|C/A|missense_variant	REV__TAF5L|p.W411L|1|0.18|ENSG00000135801|chr1:229594835-229594835|C/A|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	585.8187866210938	2	585.81693	1169.61931	-0.21429	-0.00012554	2.7157	0.0015909	2.5014	0.0014653	585.818468831878	18.987	2.9929	18.784	18.51	21.503	-0.20371					127	60	4	0	0	0	0.87816	1	415	415		33.922	4.7516	1	1770400	+		91609	37674	63508	63615	102445	102445					0.04128219254607757
YTRRYSSI	8	Unmodified	_YTRRYSSI_					0	0	0		nc|ENSG00000139154|Q6ZN18-3|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	522.3139038085938	2	523.274898	1044.53524	-0.032307	-1.6905E-05	0.061963	3.2424E-05	0.029656	1.5518E-05	523.2747206204002	45.719	0.78627	45.46	45.184	45.97	-0.25852					36	21	3	0	0	0	0.027866	1	4415	4415		31.955	0	1	821890			91610	18328	63509	63616	102446	102446					0.014756881577113745
YTSAVARILL	10	Unmodified	_YTSAVARILL_					0	0	0			REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	553.3041381835938	2	553.832049	1105.64954	-0.66783	-0.00036986	-3.5302	-0.0019551	-4.198	-0.002325	553.829941175766	92	1.364	91.992	91.622	92.986	-0.0082855					73	32	3	0	0	0	0.03519	1	11725	11725		24.519	11.707	1	444930	+		91611	29460	63510	63617	102447	102447					0.10094577919812764
YTSAVARILL	10	Unmodified	_YTSAVARILL_					0	0	0			REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	553.832049	1105.64954	0.30431	0.00016854	-4.7607	-0.0026367	-4.4564	-0.0024681	553.829382369606	91.981	0.97271	91.99	91.658	92.631	0.009407	-0.0054579	-0.0013062	NaN	30.318	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440250	+		91612	29460	63510	63617							0.10094577919812764
YTSAVARILL	10	Unmodified	_YTSAVARILL_					0	0	0			REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	553.832049	1105.64954	-0.24645	-0.00013649	-3.9568	-0.0021914	-4.2033	-0.0023279	553.8297698768588	92.164	1.4727	92.041	91.63	93.103	-0.12242	0.045552	-0.0004157	NaN	30.318	72	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618400	+		91613	29460	63510	63617							0.10094577919812764
YTSAVARILL	10	Unmodified	_YTSAVARILL_					0	0	0			REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	REV__ENST00000243776.10_1_2:220403697-220404108:-|nuORF	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	553.832049	1105.64954	0.023178	1.2837E-05	-4.0134	-0.0022227	-3.9902	-0.0022099	553.8296969854592	92.119	1.2572	91.978	91.66	92.917	-0.14131	-0.017955	-0.00047833	NaN	30.318	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493130	+		91614	29460	63510	63617							0.10094577919812764
YTSDYFISY	9	Unmodified	_YTSDYFISY_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	579.7528686523438	2	579.75313	1157.49171	0.090035	5.2198E-05	0.52754	0.00030585	0.61758	0.00035804	579.7529827980584	75.096	1.3716	74.82	74.438	75.809	-0.27573					102	33	6	0	0	0	0.014907	5	8857	8835;8845;8857;8869;8881		162.31	51.968	1	18832000			91615	4845	63511	63618	102448;102449;102450;102451;102452	102450					-0.08073966130086774
YTSDYFISY	9	Unmodified	_YTSDYFISY_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	579.7527465820312	2	579.75313	1157.49171	-0.77238	-0.00044779	0.8985	0.00052091	0.12612	7.312E-05	579.7535916599136	75.094	1.2962	74.831	74.446	75.743	-0.26325					81	31	5	0	0	0	0.014907	5	8862	8852;8862;8873;8885;8897		214.25	115.62	1	19609000			91616	4845	63511	63618	102453;102454;102455;102456;102457	102454					-0.08073966130086774
YTSDYFISY	9	Unmodified	_YTSDYFISY_					0	0	0		nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1	nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921-2|ETS1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	579.75341796875	2	579.75313	1157.49171	-0.06192	-3.5898E-05	0.046948	2.7218E-05	-0.014972	-8.6801E-06	579.7531772206706	74.928	1.1905	74.745	74.309	75.5	-0.18279					88	28	6	0	0	0	0.014907	4	8840	8817;8828;8840;8852		162.31	64.833	1	18901000			91617	4845	63511	63618	102458;102459;102460;102461	102460					-0.08073966130086774
YTSIFGVL	8	Unmodified	_YTSIFGVL_					0	0	0		nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2;nc|ENSG00000167703|Q8N370-4|SLC43A2	nc|ENSG00000167703|Q8N370-2|SLC43A2	nc|ENSG00000167703|Q8N370-2|SLC43A2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	450.27447509765625	2	450.247286	898.48002	0.11942	5.3769E-05	3.9944	0.0017985	4.1139	0.0018523	450.2501253477729	92.233	0.53908	92.092	91.792	92.331	-0.14131					19	12	3	0	0	0	0.027866	1	11293	11293		20.482	0	1	97778			91618	7726	63512	63619	102462	102462					0.026718816372408583
YTSLELRKP	9	Unmodified	_YTSLELRKP_					0	0	0			REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	REV__ENST00000488236.5_1_3:9495468-9506425:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	554.80859375	2	553.813856	1105.61316	-0.16737	-9.2694E-05	-0.13917	-7.7073E-05	-0.30654	-0.00016977	553.8134655888873	45.76	0.56655	45.499	45.249	45.815	-0.26118					34	15	3	0	0	0	0.024541	1	4401	4401		24.203	6.8378	1	903370	+		91619	33636	63513	63620	102463	102463					0.06457701023100526
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	522.7535400390625	2	522.753464	1043.49238	-0.3702	-0.00019353	0.18847	9.8522E-05	-0.18174	-9.5004E-05	522.7533981296385	31.597	1.193	31.356	30.627	31.82	-0.24109					70	29	4	0	0	0	0.053401	1	2119	2119		127.46	28.087	1	1724700			91620	1272	63514	63621	102464	102464					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	522.7534790039062	2	522.753464	1043.49238	-0.078638	-4.1108E-05	-0.23487	-0.00012278	-0.31351	-0.00016389	522.7532469828902	31.51	0.95587	31.325	30.865	31.821	-0.18503					70	23	4	0	0	0	0.025498	1	2101	2101		145.16	40.409	1	1503200			91621	1272	63514	63621	102465	102465					-0.027631266903881624
YTSPGTQKY	9	Unmodified	_YTSPGTQKY_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	522.7534790039062	2	522.753464	1043.49238	-0.30151	-0.00015762	-0.043413	-2.2694E-05	-0.34493	-0.00018031	522.7533833336414	31.518	0.97987	31.366	30.887	31.867	-0.15231					65	24	4	0	0	0	0.015901	1	2095	2095		157.33	45.681	1	1693600			91622	1272	63514	63621	102466	102466					-0.027631266903881624
YTSRLKKKQGT	11	Unmodified	_YTSRLKKKQGT_					0	0	0			REV__ENST00000518267.5_1_5:171533890-171542129:-|nuORF	REV__ENST00000518267.5_1_5:171533890-171542129:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2565612792969	3	437.257738	1308.75138	-0.049713	-2.1737E-05	-0.63356	-0.00027703	-0.68327	-0.00029876	437.2574626155363	95.685	2.2253	95.548	94.254	96.479	-0.13689					148	51	3	0	0	0	1.0371	1	11789	11789		28.577	6.7963	1	454870	+		91623	34228	63515	63622	102467	102467					0.10935824271541605
YTSRLKKKQGT	11	Unmodified	_YTSRLKKKQGT_					0	0	0			REV__ENST00000518267.5_1_5:171533890-171542129:-|nuORF	REV__ENST00000518267.5_1_5:171533890-171542129:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	437.2565002441406	3	437.257738	1308.75138	0.70758	0.0003094	-1.6013	-0.00070019	-0.89375	-0.0003908	437.2569903238515	97.355	3.1993	97.218	96.435	99.634	-0.1367					229	75	5	0	0	0	1.017	2	12148	12105;12148		33.039	8.7635	1	1350500	+		91624	34228	63515	63622	102468;102469	102469					0.10935824271541605
YTSRLKKKQGT	11	Unmodified	_YTSRLKKKQGT_					0	0	0			REV__ENST00000518267.5_1_5:171533890-171542129:-|nuORF	REV__ENST00000518267.5_1_5:171533890-171542129:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	437.2564392089844	3	437.257738	1308.75138	0.65841	0.0002879	-1.2001	-0.00052476	-0.54169	-0.00023686	437.2572333778059	95.546	2.1374	95.424	94.259	96.396	-0.12251					102	49	3	0	0	0	1.0532	1	11819	11819		24.232	5.7008	1	349580	+		91625	34228	63515	63622	102470	102470					0.10935824271541605
YTSTPARSY	9	Unmodified	_YTSTPARSY_					0	0	0		ENST00000475187.5_1_22:29940492-29945087:-|nuORF	ENST00000475187.5_1_22:29940492-29945087:-|nuORF	ENST00000475187.5_1_22:29940492-29945087:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.2515258789062	2	523.251089	1044.48762	-0.33138	-0.0001734	0.23545	0.0001232	-0.095932	-5.0197E-05	523.2511558353604	35.184	1.0706	34.968	34.671	35.741	-0.21555					65	27	3	0	0	0	0.23085	2	2650	2626;2650		84.916	10.66	1	16505000			91626	15053	63516	63623	102471;102472	102472					-0.03284010833135653
YTSTVSTGITD	11	Unmodified	_YTSTVSTGITD_					0	0	0		nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	572.2877197265625	2	572.772051	1143.52955	0.057235	3.2783E-05	-1.9757	-0.0011316	-1.9184	-0.0010988	572.7709190217322	71.385	0.41295	71.123	70.95	71.363	-0.26199					16	9	2	0	0	0	0.024741	1	8317	8317		23.523	0	1	102010			91627	1001	63517	63624	102473	102473					-0.03647499935300402
YTTATGRNI	9	Unmodified	_YTTATGRNI_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	498.7584228515625	2	498.759081	995.503609	-0.23841	-0.00011891	-0.036993	-1.8451E-05	-0.2754	-0.00013736	498.75902178158	34.429	0.96059	34.222	33.931	34.892	-0.20696					68	23	4	0	0	0	0.53979	1	2521	2521		56.721	1.2168	1	4961200			91628	1626	63518	63625	102474	102474					0.005676954037653559
YTTFVVSAS	9	Unmodified	_YTTFVVSAS_					0	0	0			REV__nc|ENSG00000239857|Q7L5D6-2|GET4	REV__nc|ENSG00000239857|Q7L5D6-2|GET4	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	487.7450866699219	2	487.745108	973.475663	3.4191	0.0016676	-2.6734	-0.0013039	0.7457	0.00036371	487.7436314612838	16.785	0.46429	16.785	16.638	17.102	0					25	13	3	0	0	0	0.94809	1	92	92		29.15	3.6994	1	105120	+		91629	28956	63519	63626	102475	102475					-0.012136275763282356
YTVDYAINLQ	10	Unmodified	_YTVDYAINLQ_					0	0	0			REV__ENSG00000126353|ENST00000246657|CCR7	REV__ENSG00000126353|ENST00000246657|CCR7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	600.82421875	2	600.300778	1198.587	0.73007	0.00043826	1.9059	0.0011441	2.636	0.0015824	600.3016435317561	54.721	0.58584	54.515	54.318	54.904	-0.20613					36	15	3	0	0	0	0.03519	1	5866	5866		25.574	0	1	493180	+		91630	22891	63520	63627	102476	102476					-0.004346129390569331
YTVEWSIK	8	Unmodified	_YTVEWSIK_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	513.26953125	2	513.26875	1024.52295	-0.51486	-0.00026426	-0.92088	-0.00047266	-1.4357	-0.00073692	513.268819809957	79.468	1.6715	79.468	79.035	80.707	0					86	39	4	0	0	0	0.68164	2	9912	9897;9912		68.787	7.8149	1	6158900			91631	10919	63521	63628	102477;102478	102478					0.011666516946434058
YTVEWSIK	8	Unmodified	_YTVEWSIK_					0	0	0		ENSG00000257335|ENST00000475668|MGAM;nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.C996Lfs*12|1|0.18|ENSG00000257335|chr7:142052806-142052807|-/T|frameshift_variant	ENSG00000257335|ENST00000475668|MGAM	ENSG00000257335|ENST00000475668|MGAM	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	513.268798828125	2	513.26875	1024.52295	-0.52508	-0.00026951	-0.8309	-0.00042647	-1.356	-0.00069598	513.2687894126938	79.477	1.6634	79.495	78.946	80.609	0.018677					91	39	4	0	0	0	0.68535	1	9822	9822		68.485	7.5128	1	7139400			91632	10919	63521	63628	102479	102479					0.011666516946434058
YTVGAPHTW	9	Unmodified	_YTVGAPHTW_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;ENST00000574567.1_1_18:2578953-2579046:+|nuORF	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	515.7692260742188	2	516.250892	1030.48723	0.27782	0.00014343	0.050937	2.6296E-05	0.32876	0.00016972	516.250830015444	50.676	0.6291	50.399	50.111	50.74	-0.27643					37	16	3	0	0	0	0.024323	1	5142	5142		63.306	26.147	1	889670			91633	1700	63522	63629	102480	102480					-0.026793857623488293
YTVKFDSLLL	10	Unmodified	_YTVKFDSLLL_					0	0	0		nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT;ENST00000477340.5_1_20:62339420-62365174:+|nuORF;ENST00000478385.5_1_20:62340364-62366220:+|nuORF	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	nc|ENSG00000197114|Q8N5A5-3|ZGPAT	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	599.8099365234375	2	599.839539	1197.66453	-0.69951	-0.00041959	0.86458	0.00051861	0.16507	9.9013E-05	599.8398487535457	76.579	0.12275	76.591	76.488	76.611	0.011635					4	2	2	0	0	0	0.03519	1	9359	9359		11.511	0	1	98326			91634	9955	63523	63630	102481	102481					0.07360024997160508
YTVLTPLLN	9	Unmodified	_YTVLTPLLN_					0	0	0		ENSG00000254737|ENST00000641722|OR10G4;OR10G4|p.P284L|1|0.19|ENSG00000254737|chr11:124016425-124016425|C/T|missense_variant;ENSG00000236981|ENST00000375024|OR10G9;ENSG00000234560|ENST00000641224|OR10G8	ENSG00000254737|ENST00000641722|OR10G4	ENSG00000254737|ENST00000641722|OR10G4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	516.3139038085938	2	517.30005	1032.58555	-0.46266	-0.00023934	0.71388	0.00036929	0.25122	0.00012995	517.3000117362116	97.198	0.8911	97.198	96.792	97.683	0					31	19	2	0	0	0	0.024487	1	12458	12458		24.203	0	1	173940			91635	10884	63524	63631	102482	102482					0.07055797762882321
YTVPQLGDT	9	Unmodified	_YTVPQLGDT_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	497.2501220703125	2	497.248015	992.481476	1.168	0.00058079	-3.0548	-0.001519	-1.8868	-0.00093821	497.24642496456283	106.75	0.73323	106.75	106.36	107.09	0					39	23	2	0	0	0	0.72875	1	13701	13701		44.117	13.613	1	323370			91636	6398	63525	63632	102483	102483					-0.01506529064647566
YTVSICLKV	9	Unmodified	_YTVSICLKV_					0	0	0			REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF	REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	513.7671508789062	2	513.288628	1024.5627	-1.172	-0.00060157	-2.6265	-0.0013481	-3.7985	-0.0019497	513.791522633007	79.674	0.41876	79.502	79.233	79.652	-0.17225					15	9	3	0	0	0	0.023007	1	9827	9827		47.657	17.154	1	21051	+		91637	30113	63526	63633	102484	102484					0.05140455373725672
YTVSKLQVL	9	Unmodified	_YTVSKLQVL_					0	0	0		ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.7594604492188	2	525.813325	1049.6121	-0.76702	-0.00040331	0.2972	0.00015627	-0.46982	-0.00024704	525.8132721085113	57.239	0.69361	57.072	56.751	57.444	-0.1672					39	18	3	0	0	0	0.024374	1	6252	6252		58.782	2.0609	1	1110100			91638	8885	63527	63634	102485	102485					0.08927486654192762
YTVSPKRV	8	Unmodified	_YTVSPKRV_					0	0	0		ENST00000463674.5_1_21:42613685-42647548:+|nuORF	ENST00000463674.5_1_21:42613685-42647548:+|nuORF	ENST00000463674.5_1_21:42613685-42647548:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	476.2666320800781	2	475.276909	948.539266	-0.39493	-0.0001877	-0.23663	-0.00011247	-0.63156	-0.00030017	475.2765798805916	31.446	0.25483	31.294	31.124	31.379	-0.15231					13	6	3	0	0	0	0.027866	1	2081	2081		65.803	17.888	1	96648			91639	14738	63528	63635	102486	102486					0.06293777651433174
YTVVTPVLN	9	Unmodified	_YTVVTPVLN_					0	0	0		ENSG00000280236|ENST00000642051|OR12D2;nc|ENSG00000251608|P0DN82|OR12D1	ENSG00000280236|ENST00000642051|OR12D2	ENSG00000280236|ENST00000642051|OR12D2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	502.8138732910156	2	503.2844	1004.55425	0.62392	0.00031401	-0.8396	-0.00042256	-0.21569	-0.00010855	503.2840929489687	95.99	1.6688	95.867	94.641	96.309	-0.12305					55	38	3	0	0	0	0.023596	1	11872	11872		35.618	0	1	590730			91640	11079	63529	63636	102487	102487					0.05215224728760859
YTYATRIAGN	10	Unmodified	_YTYATRIAGN_					0	0	0			REV__ENSG00000087903|ENST00000303657|RFX2;REV__ENST00000586940.1_1_19:6027321-6110452:-|nuORF	REV__ENSG00000087903|ENST00000303657|RFX2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	564.2998046875	2	565.285463	1128.55637	0.047926	2.7092E-05	3.7878	0.0021412	3.8357	0.0021683	565.2875026997477	74.732	0.93791	74.473	74.201	75.139	-0.25887					60	22	4	0	0	0	0.03519	1	9107	9107		47.657	0.8909	1	2221900	+		91641	20805;35614	63530	63637	102488	102488					-0.002763465334282955
YTYKTNDKV	9	Unmodified	_YTYKTNDKV_					0	0	0			REV__nc|ENSG00000001631|O00522-3|KRIT1	REV__nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	565.7716064453125	2	566.287671	1130.56079	-1.1013	-0.00062364	1.163	0.00065858	0.061701	3.494E-05	566.2882847809791	44.466	0.71953	44.247	43.826	44.546	-0.21939					40	19	3	0	0	0	0.024319	1	4170	4170		56.721	3.3696	1	857000	+		91642	19761	63531	63638	102489	102489					0.0007311788947390596
YTYLLLLL	8	Unmodified	_YTYLLLLL_					0	0	0		nc|ENSG00000227191|P03986|TRGC2	nc|ENSG00000227191|P03986|TRGC2	nc|ENSG00000227191|P03986|TRGC2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	506.7775573730469	2	506.309887	1010.60522	0.23634	0.00011966	-1.405	-0.00071137	-1.1687	-0.00059171	506.3091345054052	50.332	1.198	50.151	49.864	51.062	-0.18071					58	31	2	0	0	0	0.027866	1	5226	5226		39.021	9.18	1	155210			91643	18740	63532	63639	102490	102490					0.10034173773635757
YTYRGPKAF	9	Unmodified	_YTYRGPKAF_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	551.788818359375	2	551.787641	1101.56073	-0.36114	-0.00019927	0.21602	0.0001192	-0.14511	-8.0072E-05	551.7876471685803	41.264	1.0696	41.128	40.635	41.705	-0.13554					47	27	2	0	0	0	0.2508	1	3632	3632		82.241	30.905	1	1629100			91644	9229	63533	63640	102491	102491					0.0140116268012207
YTYSAPPKV	9	Unmodified	_YTYSAPPKV_					0	0	0			REV__ENSG00000196116|ENST00000355295|TDRD7	REV__ENSG00000196116|ENST00000355295|TDRD7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	513.2689819335938	2	513.26875	1024.52295	0.18164	9.3229E-05	-0.47046	-0.00024147	-0.28882	-0.00014824	513.268486772638	79.61	1.2475	79.391	78.791	80.038	-0.21923					79	29	4	0	0	0	0.31247	1	9557	9557		73.975	0	1	6971000	+		91645	28127	63534	63641	102492	102492					0.011666516946434058
YTYVILES	8	Unmodified	_YTYVILES_					0	0	0			REV__ENSG00000166479|ENST00000299608|TMX3	REV__ENSG00000166479|ENST00000299608|TMX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	494.3010559082031	2	494.255308	986.496064	0.11433	5.6507E-05	0.47679	0.00023566	0.59112	0.00029216	494.25603918273146	96.341	0.41277	96.204	95.978	96.391	-0.1367					13	9	2	0	0	0	0.027866	1	11911	11911		24.203	0	1	74888	+		91646	26024	63535	63642	102493	102493					0.0022754308347430197
YVATVTIALS	10	Unmodified	_YVATVTIALS_					0	0	0			REV__ENST00000357849.8_1_8:67974401-67974530:-|nuORF	REV__ENST00000357849.8_1_8:67974401-67974530:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	518.7683715820312	2	519.297507	1036.58046	-0.3986	-0.00020699	-4.2679	-0.0022163	-4.6665	-0.0024233	519.2950236666892	70.777	0.4321	70.788	70.422	70.854	0.010735					12	9	2	0	0	0	0.03519	1	8459	8459		44.117	0	1	135980	+		91647	30841	63536	63643	102494	102494					0.06363493900221329
YVCKVCNKSF	10	Unmodified	_YVCKVCNKSF_					0	0	0		nc|ENSG00000196387|P52738-2|ZNF140;ENSG00000196387|ENST00000355557|ZNF140	nc|ENSG00000196387|P52738-2|ZNF140	nc|ENSG00000196387|P52738-2|ZNF140	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	596.2561645507812	2	595.788469	1189.56239	-0.69297	-0.00041286	4.2061	0.002506	3.5132	0.0020931	595.7907731304358	70.36	0.99192	70.088	69.201	70.193	-0.27185					21	14	2	0	0	0	0.03519	1	8133	8133		37.812	6.2817	1	108460			91648	9863	63537	63644	102495	102495					-0.02481287617797534
YVCKVCNKSF	10	Unmodified	_YVCKVCNKSF_					0	0	0		nc|ENSG00000196387|P52738-2|ZNF140;ENSG00000196387|ENST00000355557|ZNF140	nc|ENSG00000196387|P52738-2|ZNF140	nc|ENSG00000196387|P52738-2|ZNF140	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	595.788469	1189.56239	0.012698	7.5652E-06	4.5451	0.0027079	4.5578	0.0027155	595.7912968874651	70.312	0.28333	70.019	69.754	70.038	-0.29291	0.012025	-8.7874E-05	NaN	37.812	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215860			91649	9863	63537	63644							-0.02481287617797534
YVCRYVQN	8	Unmodified	_YVCRYVQN_					0	0	0			REV__nc|ENSG00000136068|O75369-7|FLNB	REV__nc|ENSG00000136068|O75369-7|FLNB	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	522.7896728515625	2	522.750201	1043.48585	-0.91563	-0.00047865	1.7135	0.00089575	0.7979	0.0004171	522.7515533869986	84.209	0.68655	84.209	83.735	84.422	0					24	15	2	0	0	0	0.027866	1	10551	10551		52.299	6.3472	1	99932	+		91650	23622	63538	63645	102496	102496					-0.034153431227423425
YVDEQMTMKT	10	Unmodified	_YVDEQMTMKT_					0	0	0		FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant;ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312|FAM193A	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	FAM193A|p.L673Sfs*142|1|0.25|ENSG00000125386|chr4:2693667-2693667|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	415.83917236328125	3	415.854513	1244.54171	-0.67317	-0.00027994	2.1767	0.00090521	1.5036	0.00062527	415.8555962178734	28.263	1.0544	28.094	27.886	28.941	-0.16897					31	24	2	0	0	0	0.03519	1	1656	1656		30.569	0	1	93645			91651	4100	63539	63646	102497	102497					-0.07077922788084834
YVDFEGINF	9	Unmodified	_YVDFEGINF_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	552.2532958984375	2	552.25584	1102.49713	-0.24434	-0.00013494	-2.7659	-0.0015275	-3.0102	-0.0016624	552.254110042609	110.51	0.35771	110.5	110.18	110.53	-0.009491					20	12	2	0	0	0	0.94809	1	13951	13951		29.15	3.5755	1	44118			91652	11013	63540	63647	102498	102498					-0.050022425476072385
YVDFEGINF	9	Unmodified	_YVDFEGINF_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.R1858Vfs*37|1|0.38|ENSG00000272333|chr19:35732037-35732037|C/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	552.25584	1102.49713	-0.11483	-6.3417E-05	-3.1335	-0.0017305	-3.2483	-0.0017939	552.2539305335645	110.28	0.54126	110.16	109.97	110.51	-0.12524	-0.14568	-0.00025796	NaN	29.15	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23517			91653	11013	63540	63647							-0.050022425476072385
YVDLEQLGCQ	10	Unmodified	_YVDLEQLGCQ_					0	0	0			REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.2694091796875	2	584.271164	1166.52777	0.039387	2.3013E-05	-2.11	-0.0012328	-2.0707	-0.0012098	584.269772673167	77.708	1.5352	77.466	77.148	78.683	-0.24232					101	35	4	0	0	0	0.60198	1	9269	9269		76.774	2.7994	1	3666000	+		91654	29667	63541	63648	102499	102499					-0.04882832224870981
YVDLEQLGCQ	10	Unmodified	_YVDLEQLGCQ_					0	0	0			REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	REV__ENST00000262644.8_1_8:57871124-57871475:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.2694091796875	2	584.271164	1166.52777	-0.74981	-0.00043809	-1.5209	-0.00088862	-2.2707	-0.0013267	584.2700868116382	77.645	1.6269	77.483	77.183	78.809	-0.16196					113	37	5	0	0	0	0.60198	2	9220	9220;9255		76.774	2.7994	1	3708000	+		91655	29667	63541	63648	102500;102501	102500					-0.04882832224870981
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.2796630859375	2	573.279315	1144.54408	0.077113	4.4207E-05	-0.90704	-0.00051999	-0.82993	-0.00047578	573.2790137354534	77.811	4.0977	77.549	77.099	81.196	-0.26202					251	97	6	0	0	0	0.013065	16	9277	9220;9229;9241;9253;9265;9277;9289;9301;9313;9326;9338;9350;9364;9375;9388;9425		209.84	101.87	1	101540000			91656	9026;10266	63542	63649	102502;102503;102504;102505;102506;102507;102508;102509;102510;102511;102512;102513;102514;102515;102516;102517	102507					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.2787475585938	2	573.279315	1144.54408	0.727	0.00041677	-1.5129	-0.00086733	-0.78593	-0.00045055	573.2786794773956	77.71	4.0457	77.468	77.077	81.122	-0.24232					252	96	6	0	0	0	0.013065	17	9243	9231;9243;9255;9267;9279;9291;9303;9315;9327;9340;9351;9364;9376;9387;9399;9414;9433		209.84	90.037	1	115730000			91657	9026;10266	63542	63649	102518;102519;102520;102521;102522;102523;102524;102525;102526;102527;102528;102529;102530;102531;102532;102533;102534	102519					-0.022413829964762044
YVDPQFLTY	9	Unmodified	_YVDPQFLTY_					0	0	0		nc|ENSG00000181191|Q8NG27-2|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.2787475585938	2	573.279315	1144.54408	-0.29317	-0.00016807	-0.59676	-0.00034211	-0.88992	-0.00051018	573.2791959333772	77.624	3.9931	77.462	77.097	81.09	-0.16196					241	94	4	0	0	0	0.013065	17	9205	9205;9216;9228;9240;9252;9264;9276;9288;9300;9314;9325;9337;9351;9363;9374;9387;9399		215.39	110.64	1	112560000			91658	9026;10266	63542	63649	102535;102536;102537;102538;102539;102540;102541;102542;102543;102544;102545;102546;102547;102548;102549;102550;102551	102535					-0.022413829964762044
YVDRASHLGE	10	Unmodified	_YVDRASHLGE_					0	0	0			REV__ENST00000466600.1_1_1:186823486-186908166:+|nuORF	REV__ENST00000466600.1_1_1:186823486-186908166:+|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.7821655273438	2	573.780544	1145.54654	-0.37208	-0.00021349	3.5034	0.0020102	3.1314	0.0017967	573.7826166563825	64.424	3.778	64.168	62.634	66.412	-0.25563					213	95	4	0	0	0	0.74632	1	7294	7294		64.207	4.089	1	6621900	+		91659	33041	63543	63650	102552	102552					-0.020415345388073547
YVEAALRSN	9	Unmodified	_YVEAALRSN_					0	0	0			REV__nc|ENSG00000130396|P55196-3|AFDN	REV__nc|ENSG00000130396|P55196-3|AFDN	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	511.2813720703125	2	511.766906	1021.51926	-0.32951	-0.00016863	0.94981	0.00048608	0.62029	0.00031745	511.7670162984789	95.895	1.285	95.738	95.138	96.423	-0.15646					77	29	4	0	0	0	0.024209	1	11835	11835		76.774	7.9873	1	112750	+		91660	23111	63544	63651	102553	102553					0.009359819208043518
YVEVLLPP	8	Unmodified	_YVEVLLPP_					0	0	0		ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	ENSG00000228672|ENST00000434752|PROB1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	465.7840576171875	2	465.270761	928.52697	-1.1031	-0.00051324	-2.5176	-0.0011714	-3.6207	-0.0016846	465.269383366555	44.523	0.85354	44.378	43.847	44.701	-0.1449					33	24	2	0	0	0	0.027866	1	4239	4239		28.254	20.023	1	435470			91661	10679	63545	63652	102554	102554					0.059847411883765744
YVGKVHAKK	9	Unmodified	_YVGKVHAKK_					0	0	0		ENSG00000166432|ENST00000651725|ZMAT1;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF	ENSG00000166432|ENST00000651725|ZMAT1;ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENSG00000166432|ENST00000651725|ZMAT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	515.314453125	2	515.313826	1028.6131	0.30122	0.00015522	-4.3201	-0.0022262	-4.0189	-0.002071	515.3115093250659	17.868	0.73873	17.726	17.503	18.241	-0.14278					32	14	5	0	0	0	0.98697	1	224	224		23.042	2.0956	1	722620			91662	7557;14626	63546	63653	102555	102555					0.09993745813744681
YVGVRAVSVL	10	Unmodified	_YVGVRAVSVL_					0	0	0		ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	531.8165893554688	2	531.818941	1061.62333	-0.09481	-5.0422E-05	-3.9662	-0.0021093	-4.061	-0.0021597	531.816713191982	87.362	2.9495	87.226	86.327	89.276	-0.13613					286	70	5	0	0	0	1.0271	1	10690	10690		42.396	0	1	4853400			91663	10509	63547	63654	102556	102556					0.09498308748334239
YVGYYLSI	8	Unmodified	_YVGYYLSI_					0	0	0		ENSG00000152034|ENST00000281806|MCHR2	ENSG00000152034|ENST00000281806|MCHR2	ENSG00000152034|ENST00000281806|MCHR2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	489.2930908203125	2	489.252569	976.490584	-0.33776	-0.00016525	0.044913	2.1974E-05	-0.29284	-0.00014327	489.2524993704513	67.029	0.52763	67.029	66.798	67.326	0					18	12	2	0	0	0	0.027866	1	7961	7961		21.702	0	1	80723			91664	6244	63548	63655	102557	102557					0.0013986429167971437
YVHFTPIYQ	9	Unmodified	_YVHFTPIYQ_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	584.2694702148438	2	584.295299	1166.57605	0.0092183	5.3862E-06	-2.971	-0.001736	-2.9618	-0.0017306	584.2934150861267	77.822	0.29266	77.58	77.405	77.698	-0.24232					11	6	2	0	0	0	0.023596	1	9256	9256		73.975	13.003	1	143570	+		91665	23803	63549	63656	102558	102558					-0.0005797052267553227
YVHHARHT	8	Unmodified	_YVHHARHT_					0	0	0			REV__ENSG00000196313|ENST00000434423|POM121	REV__ENSG00000196313|ENST00000434423|POM121	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.7607116699219	2	510.759749	1019.50495	3.8935	0.0019887	-1.8756	-0.00095798	2.018	0.0010307	510.75862505439756	17.894	0.79521	17.643	17.371	18.167	-0.25049					34	15	4	0	0	0	0.99042	1	225	225		38.806	0.99462	1	315550	+		91666	28162	63550	63657	102559	102559					-0.004026257168220582
YVHQDCMKK	9	Oxidation (M)	_YVHQDCM(Oxidation (M))KK_		YVHQDCM(1)KK		YVHQDCM(91)KK	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	584.2703247070312	2	584.267901	1166.52125	-0.23136	-0.00013517	3.7344	0.0021819	3.503	0.0020467	584.2699524509716	77.729	1.0631	77.467	77.184	78.247	-0.26202					74	24	4	0	0	0	0.18915	2	9281	9268;9281		90.777	23.283	1	3307400			91667	5028	63551	63658	102560;102561	102561		206			-0.05535048657270636
YVHQDCMKK	9	Oxidation (M)	_YVHQDCM(Oxidation (M))KK_		YVHQDCM(1)KK		YVHQDCM(74)KK	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	584.2694091796875	2	584.267901	1166.52125	0.039388	2.3013E-05	3.474	0.0020297	3.5134	0.0020528	584.269772673167	77.708	1.5352	77.466	77.148	78.683	-0.24232					101	35	4	0	0	0	0.31247	1	9283	9283		73.975	15.745	1	3666000			91668	5028	63551	63658	102562	102562		206			-0.05535048657270636
YVHQDCMKK	9	Oxidation (M)	_YVHQDCM(Oxidation (M))KK_		YVHQDCM(1)KK		YVHQDCM(100)KK	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	584.26904296875	2	584.267901	1166.52125	-0.74982	-0.00043809	4.0631	0.002374	3.3133	0.0019359	584.2700868116382	77.645	1.6269	77.483	77.183	78.809	-0.16196					113	37	5	0	0	0	0.13494	1	9242	9242		102.77	36.344	1	3708000			91669	5028	63551	63658	102563	102563		206			-0.05535048657270636
YVIKKVSPK	9	Unmodified	_YVIKKVSPK_					0	0	0			REV__ENST00000433369.6_1_7:77168143-77200423:+|nuORF	REV__ENST00000433369.6_1_7:77168143-77200423:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	531.7686157226562	2	531.33951	1060.66447	-1.4766	-0.00078459	0.80424	0.00042732	-0.67239	-0.00035727	531.339768160311	40.627	0.46584	40.397	40.158	40.624	-0.23029					21	12	2	0	0	0	0.024477	1	3508	3508		27.882	2.3082	1	350990	+		91670	32403	63552	63659	102564	102564					0.13656069787793967
YVKAFPFTN	9	Unmodified	_YVKAFPFTN_					0	0	0		ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	544.2677001953125	2	543.784567	1085.55458	-0.37328	-0.00020298	0.59127	0.00032152	0.21799	0.00011854	543.7829545609463	35.837	0.84734	35.638	35.169	36.016	-0.19829					46	23	3	0	0	0	0.024021	1	2715	2715		49.442	13.823	1	713600			91671	4731	63553	63660	102565	102565					0.015226444486188484
YVKERSKAM	9	Oxidation (M)	_YVKERSKAM(Oxidation (M))_		YVKERSKAM(1)		YVKERSKAM(58)	0	0	1		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	564.299072265625	2	564.297516	1126.58048	-0.14676	-8.2817E-05	0.39742	0.00022426	0.25066	0.00014144	564.2974241830623	16.802	0.26428	16.594	16.447	16.712	-0.20777					11	5	3	0	0	0	0.51687	1	95	95		58.23	15.834	1	70389			91672	4355	63554	63661	102566	102566		175			0.022251706285715045
YVKHKEYD	8	Unmodified	_YVKHKEYD_					0	0	0			REV__nc|ENSG00000211592|P01834|IGKC	REV__nc|ENSG00000211592|P01834|IGKC	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	541.2871704101562	2	541.269281	1080.52401	-1.0335	-0.0005594	-2.4838	-0.0013444	-3.5173	-0.0019038	541.2678604403615	69.105	0.80524	69.12	68.865	69.67	0.015121					48	20	3	0	0	0	0.027866	1	8208	8208		30.504	11.144	1	997330	+		91673	37094	63555	63662	102567	102567					-0.01303133936426093
YVKKLEEQ	8	Unmodified	_YVKKLEEQ_					0	0	0			REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP	REV__nc|ENSG00000170011|Q8NFW9-2|MYRIP	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7871704101562	2	518.787307	1035.56006	0.018118	9.3992E-06	-0.61737	-0.00032028	-0.59925	-0.00031088	518.7868725129083	24.708	0.78057	24.533	24.296	25.077	-0.17484					45	17	4	0	0	0	0.56592	1	1107	1107		79.451	2.6769	1	1700000	+		91674	36918	63556	63663	102568	102568					0.04370323240414109
YVKLGQLLF	9	Unmodified	_YVKLGQLLF_					0	0	0			REV__nc|ENSG00000166840|Q969I3-2|GLYATL1	REV__nc|ENSG00000166840|Q969I3-2|GLYATL1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	540.8255004882812	2	540.826235	1079.63792	-1.6086	-0.00086999	2.0191	0.001092	0.41047	0.00022199	540.8266864944628	91.1	1.0508	90.951	90.691	91.742	-0.1487					59	24	4	0	0	0	0.20304	1	11170	11170		88.643	3.2834	1	720890	+		91675	36893	63557	63664	102569	102569					0.10128380896458111
YVKLKEQE	8	Unmodified	_YVKLKEQE_					0	0	0		ENSG00000147614|ENST00000285393|ATP6V0D2	ENSG00000147614|ENST00000285393|ATP6V0D2	ENSG00000147614|ENST00000285393|ATP6V0D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	518.7871704101562	2	518.787307	1035.56006	-0.57384	-0.0002977	-0.027423	-1.4227E-05	-0.60126	-0.00031193	518.7871497349388	24.914	0.81672	24.687	24.494	25.311	-0.22683					48	18	5	0	0	0	0.62178	1	1145	1145		74.255	0.28031	1	2032300			91676	5983	63558	63665	102570	102570					0.04370323240414109
YVKLKEQE	8	Unmodified	_YVKLKEQE_					0	0	0		ENSG00000147614|ENST00000285393|ATP6V0D2	ENSG00000147614|ENST00000285393|ATP6V0D2	ENSG00000147614|ENST00000285393|ATP6V0D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.787841796875	2	518.787307	1035.56006	0.018118	9.3992E-06	-0.61737	-0.00032028	-0.59925	-0.00031088	518.7868725129083	24.708	0.78057	24.533	24.296	25.077	-0.17484					45	17	4	0	0	0	0.91956	1	1121	1121		49.442	1.5259	1	1700000			91677	5983	63558	63665	102571	102571					0.04370323240414109
YVKLKEQE	8	Unmodified	_YVKLKEQE_					0	0	0		ENSG00000147614|ENST00000285393|ATP6V0D2	ENSG00000147614|ENST00000285393|ATP6V0D2	ENSG00000147614|ENST00000285393|ATP6V0D2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	518.787353515625	2	518.787307	1035.56006	1.8311	0.00094993	-2.5436	-0.0013196	-0.71259	-0.00036968	518.7858468913955	24.836	0.8171	24.665	24.383	25.2	-0.17163					50	18	4	0	0	0	0.68164	1	1096	1096		68.787	0	1	1890900			91678	5983	63558	63665	102572	102572					0.04370323240414109
YVKRHLTI	8	Unmodified	_YVKRHLTI_					0	0	0		ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000114988|Q9H0V9-2|LMAN2L;ENST00000474494.1_1_2:97373418-97377633:-|nuORF;nc|ENSG00000114988|Q9H0V9-3|LMAN2L	ENSG00000114988|ENST00000264963|LMAN2L	ENSG00000114988|ENST00000264963|LMAN2L	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	515.31689453125	2	515.313826	1028.6131	4.2489	0.0021895	4.0754	0.0021001	8.3243	0.0042896	515.315862165047	17.96	0.61351	18.021	17.786	18.399	0.06036					33	13	5	0	0	0	1.0574	1	207	207		13.775	0.81615	1	176020			91679	3400	63559	63666	102573	102573					0.09993745813744681
YVLAKWSH	8	Unmodified	_YVLAKWSH_					0	0	0			REV__nc|ENSG00000107242|O14986-3|PIP5K1B	REV__nc|ENSG00000107242|O14986-3|PIP5K1B	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	501.2917785644531	2	502.271627	1002.5287	-0.92607	-0.00046514	0.88617	0.0004451	-0.039904	-2.0043E-05	502.2716834919131	84.186	0.25918	84.113	84.004	84.264	-0.072769					7	5	2	0	0	0	0.027866	1	10492	10492		38.806	26.599	1	53207	+		91680	21659	63560	63667	102574	102574					0.027537949969882902
YVLFPPNTGP	10	Unmodified	_YVLFPPNTGP_					0	0	0			REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	551.79833984375	2	552.78985	1103.56515	-0.28563	-0.0001579	-3.1087	-0.0017185	-3.3943	-0.0018764	552.7878821804463	56.239	1.0684	56.239	55.61	56.678	0					59	29	3	0	0	0	0.03519	1	6177	6177		40.778	12.697	1	1009700	+		91681	25040	63561	63668	102575	102575					0.017506271030242715
YVLIIFGFAG	10	Unmodified	_YVLIIFGFAG_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	550.2694091796875	2	550.312961	1098.61137	-0.58904	-0.00032416	-4.2438	-0.0023354	-4.8328	-0.0026596	550.3103637129306	65.476	0.40736	65.225	64.946	65.353	-0.25112					16	9	2	0	0	0	0.03519	1	7459	7459		44.531	14.213	1	92295	+		91682	21107	63562	63669	102576	102576					0.06600692005144992
YVLIIFGFAG	10	Unmodified	_YVLIIFGFAG_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	550.312961	1098.61137	-1.204	-0.00066259	-1.5524	-0.00085432	-2.7564	-0.0015169	550.311837000574	65.461	0.46753	65.188	64.863	65.33	-0.27282	-0.029305	0.0011522	NaN	35.201	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365480	+		91683	21107	63562	63669							0.06600692005144992
YVLIIFGFAG	10	Unmodified	_YVLIIFGFAG_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	550.312961	1098.61137	-0.68057	-0.00037453	-2.0902	-0.0011503	-2.7708	-0.0015248	550.3115256823563	65.167	0.4218	65.205	64.967	65.389	0.037384	-0.012485	0.0005603	NaN	35.201	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338030	+		91684	21107	63562	63669							0.06600692005144992
YVLIIFGFAG	10	Unmodified	_YVLIIFGFAG_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	550.312961	1098.61137	-1.391	-0.00076546	-2.9018	-0.0015969	-4.2927	-0.0023624	550.311322463461	65.465	0.28584	65.252	65.094	65.379	-0.21328	0.03444	-0.00033296	NaN	35.201	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90784	+		91685	21107	63562	63669							0.06600692005144992
YVLITRCIT	9	Unmodified	_YVLITRCIT_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	540.3324584960938	2	541.307352	1080.60015	0.30472	0.00016495	-2.3896	-0.0012935	-2.0848	-0.0011285	541.3060535246308	79.462	0.41823	79.216	79.112	79.53	-0.2465					15	9	2	0	0	0	0.024397	1	9484	9484		47.657	12.457	1	193340	+		91686	26560	63563	63670	102577	102577					0.06307546639322936
YVLKIKIL	8	Unmodified	_YVLKIKIL_					0	0	0		nc|ENSG00000074527|Q9HB63-3|NTN4;ENSG00000074527|ENST00000343702|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	495.323486328125	2	495.341521	988.668489	1.709	0.00084655	-0.19005	-9.4138E-05	1.519	0.00075241	495.34161010530096	64.046	0.14457	64.046	63.917	64.062	0					5	3	2	0	0	0	0.027866	1	7506	7506		15.636	6.8139	1	116870			91687	1529	63564	63671	102578	102578					0.17370159281495035
YVLKKAQVL	9	Unmodified	_YVLKKAQVL_					0	0	0		ENST00000491731.1_1_9:132630652-132632199:+|nuORF;ENSG00000136878|ENST00000372429|USP20	ENST00000491731.1_1_9:132630652-132632199:+|nuORF	ENST00000491731.1_1_9:132630652-132632199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	531.7678833007812	2	531.33951	1060.66447	-0.7728	-0.00041062	0.01103	5.8605E-06	-0.76177	-0.00040476	531.3394111210068	40.377	0.39632	40.228	40.078	40.474	-0.1497					14	10	2	0	0	0	0.024487	1	3503	3503		40.573	8.6178	1	321580			91688	5063	63565	63672	102579	102579					0.13656069787793967
YVLKKAQVL	9	Unmodified	_YVLKKAQVL_					0	0	0		ENST00000491731.1_1_9:132630652-132632199:+|nuORF;ENSG00000136878|ENST00000372429|USP20	ENST00000491731.1_1_9:132630652-132632199:+|nuORF	ENST00000491731.1_1_9:132630652-132632199:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	531.7684326171875	2	531.33951	1060.66447	-0.65613	-0.00034863	-0.1851	-9.8353E-05	-0.84123	-0.00044698	531.3392021499507	40.612	0.3965	40.387	40.187	40.583	-0.225					18	10	2	0	0	0	0.024412	1	3515	3515		50.025	5.9077	1	334330			91689	5063	63565	63672	102580	102580					0.13656069787793967
YVLKKMKSG	9	Unmodified	_YVLKKMKSG_					0	0	0			REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	528.2830200195312	2	527.309895	1052.60524	-0.17751	-9.3601E-05	2.9886	0.0015759	2.8111	0.0014823	527.3114268284547	23.562	0.41805	23.639	23.272	23.69	0.076241					11	9	2	0	0	0	0.024541	1	865	865		24.203	6.8378	1	33477	+		91690	35257	63566	63673	102581	102581					0.08103850501947818
YVLLKEQDS	9	Unmodified	_YVLLKEQDS_					0	0	0			REV__ENST00000449830.5_1_17:656175-657770:+|nuORF	REV__ENST00000449830.5_1_17:656175-657770:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	547.82666015625	2	547.790047	1093.56554	-0.1475	-8.08E-05	-2.633	-0.0014423	-2.7805	-0.0015231	547.7883833776434	95.613	0.25843	95.615	95.481	95.739	0.0020752					6	5	2	0	0	0	0.024427	1	12086	12086		51.335	5.3632	1	28510	+		91691	32686	63567	63674	102582	102582					0.022500020322468117
YVLLSNAEK	9	Unmodified	_YVLLSNAEK_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2;REV__FAT2|p.K2929Rfs*103|1|0.1|ENSG00000086570|chr5:151542341-151542341|T/-|frameshift_variant	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	518.7872924804688	2	518.787307	1035.56006	0.018118	9.3992E-06	-0.61737	-0.00032028	-0.59925	-0.00031088	518.7868725129083	24.708	0.78057	24.533	24.296	25.077	-0.17484					45	17	4	0	0	0	0.50848	1	1095	1095		58.782	0	1	1700000	+		91692	20775;36023	63568	63675	102583	102583					0.04370323240414109
YVLPEVSKV	9	Unmodified	_YVLPEVSKV_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MSMS	OPSCC_39_ClassI_Rep-2	2	517.299072265625	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.775	1	58.587	58.087	59.087	-0.18705								0	0	0	0.073652	1	6644	6644		98.629	24.374	1				91693	3418	63569	63676	102584	102584					0.07055797762859584
YVLPEVSKV	9	Unmodified	_YVLPEVSKV_					0	0	0		ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-3|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	ENSG00000115211|ENST00000347454|EIF2B4	MSMS	OPSCC_39_ClassI_Rep-3	3	517.2989501953125	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.431	1	58.522	58.022	59.022	0.091217								0	0	0	0.16394	1	6544	6544		78.264	6.3863	1				91694	3418	63569	63676	102585	102585					0.07055797762859584
YVLPVLLAM	9	Unmodified	_YVLPVLLAM_					0	0	0			REV__CYC1|p.M295I|1|0.37|ENSG00000179091|chr8:144097243-144097243|G/A|missense_variant	REV__CYC1|p.M295I|1|0.37|ENSG00000179091|chr8:144097243-144097243|G/A|missense_variant	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	509.8034973144531	2	509.803914	1017.59328	0.52857	0.00026947	-0.9194	-0.00046871	-0.39083	-0.00019925	509.8032727891544	98.163	1.089	98.161	97.813	98.902	-0.0020752					57	25	4	0	0	0	0.93795	1	12469	12469		29.842	0	1	775880	+		91695	19638	63570	63677	102586	102586					0.08518233758763927
YVLSENNFL	9	Unmodified	_YVLSENNFL_					0	0	0			REV__ENSG00000176208|ENST00000321990|ATAD5	REV__ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	549.779052734375	2	549.776939	1097.53933	-0.54978	-0.00030226	3.7571	0.0020656	3.2073	0.0017633	549.7792660673218	102.17	0.88358	102.18	101.86	102.74	0.0073471					59	20	4	0	0	0	0.62163	1	13050	13050		51.335	5.3632	1	844260	+		91696	27005	63571	63678	102587	102587					-0.005542671392504417
YVLSLESGF	9	Unmodified	_YVLSLESGF_					0	0	0			REV__nc|ENSG00000114650|Q12770-4|SCAP;REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7587585449219	2	507.760758	1013.50696	-0.057698	-2.9297E-05	-2.7241	-0.0013832	-2.7818	-0.0014125	507.75918278340447	24.368	0.72509	24.153	23.909	24.635	-0.2151					32	16	3	0	0	0	0.64155	1	1055	1055		50.025	0.58299	1	1248700	+		91697	22134;36580	63572	63679	102588	102588					0.0007494545776580708
YVLTQPPSV	9	Unmodified	_YVLTQPPSV_					0	0	0		nc|ENSG00000211662|P80748|IGLV3-21	nc|ENSG00000211662|P80748|IGLV3-21	nc|ENSG00000211662|P80748|IGLV3-21	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	502.27655029296875	2	502.276575	1002.5386	-0.44858	-0.00022531	0.6005	0.00030162	0.15192	7.6307E-05	502.27648793296123	64.976	1.248	64.742	64.216	65.464	-0.2345					83	30	4	0	0	0	0.39228	1	7396	7396		66.429	7.6473	1	1896400			91698	18686	63573	63680	102589	102589					0.03742938211712499
YVLVTEKGGLV	11	Unmodified	_YVLVTEKGGLV_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	589.3428955078125	2	589.344989	1176.67542	-1.5173	-0.0008942	-1.914	-0.001128	-3.4313	-0.0020222	589.3436932414581	103.63	0.73327	103.63	103.38	104.12	0					46	17	4	0	0	0	1.0075	1	13290	13290		35.152	3.6222	1	562530			91699	3513	63574	63681	102590	102590					0.09415427371436635
YVLYKTRA	8	Unmodified	_YVLYKTRA_					0	0	0			REV__nc|ENSG00000184216|P51617-4|IRAK1	REV__nc|ENSG00000184216|P51617-4|IRAK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	507.7958068847656	2	507.292559	1012.57057	0.20262	0.00010279	-0.93954	-0.00047662	-0.73691	-0.00037383	507.2908532898538	21.033	1.1178	20.856	20.138	21.256	-0.17721					50	22	3	0	0	0	0.95417	1	643	643		44.531	2.0566	1	230340	+		91700	37009	63575	63682	102591	102591					0.06478350685517853
YVLYYLAI	8	Unmodified	_YVLYYLAI_					0	0	0		nc|ENSG00000004948|P30988-5|CALCR;nc|ENSG00000004948|P30988-6|CALCR;nc|ENSG00000004948|P30988-3|CALCR;nc|ENSG00000004948|P30988-4|CALCR;ENSG00000004948|ENST00000426151|CALCR;nc|ENSG00000004948|P30988-1|CALCR	nc|ENSG00000004948|P30988-5|CALCR	nc|ENSG00000004948|P30988-5|CALCR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	509.8037109375	2	509.286411	1016.55827	0.4545	0.00023147	-2.4168	-0.0012308	-1.9623	-0.00099937	509.281798138136	84.863	0.45954	84.725	84.448	84.908	-0.13788					19	10	3	0	0	0	0.027866	1	10251	10251		16.705	0	1	50401			91701	753	63576	63683	102592	102592					0.05065314222451889
YVMSWIKP	8	Unmodified	_YVMSWIKP_					0	0	0		nc|ENSG00000111142|P50579-3|METAP2;ENSG00000111142|ENST00000323666|METAP2;nc|ENSG00000111142|P50579-2|METAP2	nc|ENSG00000111142|P50579-3|METAP2	nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	513.2689819335938	2	512.270238	1022.52592	0.14177	7.2626E-05	3.7601	0.0019262	3.9019	0.0019988	512.2719225693335	79.891	0.3782	79.672	79.452	79.83	-0.21923					14	8	2	0	0	0	0.027866	1	9557	9557		47.916	0	1	57044			91702	3088	63577	63684	102593	102593					0.01556203547829682
YVPALSALW	9	Unmodified	_YVPALSALW_					0	0	0		nc|ENSG00000146535|Q03113-3|GNA12;nc|ENSG00000146535|Q03113-2|GNA12;ENSG00000146535|ENST00000275364|GNA12;ENST00000471281.5_1_7:2834552-2834702:-|nuORF	nc|ENSG00000146535|Q03113-3|GNA12	nc|ENSG00000146535|Q03113-3|GNA12	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	510.28277587890625	2	510.28166	1018.54877	0.92381	0.0004714	0.98566	0.00050296	1.9095	0.00097437	510.28211282943005	97.733	1.0552	97.609	96.973	98.029	-0.12368					46	24	3	0	0	0	0.64155	1	12118	12118		50.025	4.0726	1	228590			91703	5892	63578	63685	102594	102594					0.0402354593693417
YVPALSALW	9	Unmodified	_YVPALSALW_					0	0	0		nc|ENSG00000146535|Q03113-3|GNA12;nc|ENSG00000146535|Q03113-2|GNA12;ENSG00000146535|ENST00000275364|GNA12;ENST00000471281.5_1_7:2834552-2834702:-|nuORF	nc|ENSG00000146535|Q03113-3|GNA12	nc|ENSG00000146535|Q03113-3|GNA12	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	510.2847900390625	2	510.28166	1018.54877	-0.23334	-0.00011907	1.9382	0.00098901	1.7048	0.00086994	510.28266200220463	97.848	0.91312	97.683	96.991	97.904	-0.1652					37	20	2	0	0	0	0.4855	1	12111	12111		60.294	2.4827	1	283010			91704	5892	63578	63685	102595	102595					0.0402354593693417
YVPDKLIT	8	Unmodified	_YVPDKLIT_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3-2|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	474.77362060546875	2	474.773668	947.532783	0.72497	0.0003442	-0.9589	-0.00045526	-0.23393	-0.00011106	474.77314857512465	99.207	1.1754	99.203	98.724	99.899	-0.0038757					63	26	3	0	0	0	1.0133	1	12634	12634		35.201	1.0282	1	2143100			91705	7425	63579	63686	102596	102596					0.056918397000458754
YVPEPKVLD	9	Unmodified	_YVPEPKVLD_					0	0	0			REV__ENSG00000074696|ENST00000261875|HACD3	REV__ENSG00000074696|ENST00000261875|HACD3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	529.7611694335938	2	530.289682	1058.56481	-1.047	-0.0005552	-3.641	-0.0019308	-4.6879	-0.002486	530.287679303073	44.878	0.73687	44.625	44.354	45.091	-0.25252					34	18	3	0	0	0	0.024527	1	4271	4271		31.53	16.665	1	508220	+		91706	20531	63580	63687	102597	102597					0.037872073831977104
YVPEPKVLD	9	Unmodified	_YVPEPKVLD_					0	0	0			REV__ENSG00000074696|ENST00000261875|HACD3	REV__ENSG00000074696|ENST00000261875|HACD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	530.289682	1058.56481	-1.482	-0.00078587	-2.5825	-0.0013695	-4.0645	-0.0021553	530.288211335166	44.502	0.51335	44.502	44.314	44.827	0	-0.070542	0.00075809	NaN	12.812	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578490	+		91707	20531	63580	63687							0.037872073831977104
YVPEPKVLD	9	Unmodified	_YVPEPKVLD_					0	0	0			REV__ENSG00000074696|ENST00000261875|HACD3	REV__ENSG00000074696|ENST00000261875|HACD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-2	2		2	530.289682	1058.56481	-1.441	-0.00076416	-2.8189	-0.0014949	-4.26	-0.002259	530.2881009375948	44.668	0.72222	44.52	44.322	45.044	-0.1488	-0.05327	0.00050734	NaN	12.812	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476020	+		91708	20531	63580	63687							0.037872073831977104
YVPEPKVLD	9	Unmodified	_YVPEPKVLD_					0	0	0			REV__ENSG00000074696|ENST00000261875|HACD3	REV__ENSG00000074696|ENST00000261875|HACD3	MULTI-MATCH	OPSCC_39_ClassI_Rep-3	3		2	530.289682	1058.56481	-0.40846	-0.0002166	-3.1282	-0.0016589	-3.5367	-0.0018755	530.2878106279508	44.522	0.96798	44.559	44.273	45.24	0.0369	-0.013778	0.00017932	NaN	12.812	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486260	+		91709	20531	63580	63687							0.037872073831977104
YVPEPKVLD	9	Unmodified	_YVPEPKVLD_					0	0	0			REV__ENSG00000074696|ENST00000261875|HACD3	REV__ENSG00000074696|ENST00000261875|HACD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	530.289682	1058.56481	-1.0496	-0.00055658	-3.8578	-0.0020457	-4.9073	-0.0026023	530.2876738516568	44.714	0.5112	44.614	44.317	44.828	-0.099445	0.041639	-0.00059442	NaN	12.812	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465350	+		91710	20531	63580	63687							0.037872073831977104
YVPEPKVLD	9	Unmodified	_YVPEPKVLD_					0	0	0			REV__ENSG00000074696|ENST00000261875|HACD3	REV__ENSG00000074696|ENST00000261875|HACD3	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	530.289682	1058.56481	-0.75902	-0.0004025	-4.0193	-0.0021314	-4.7784	-0.0025339	530.2874978138285	44.827	0.47157	44.616	44.399	44.871	-0.21109	0.043524	-0.00076579	NaN	12.812	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510320	+		91711	20531	63580	63687							0.037872073831977104
YVPITRLDL	9	Unmodified	_YVPITRLDL_					0	0	0		SLITRK1|p.H181R|1|0.68|ENSG00000178235|chr13:83880966-83880966|T/C|missense_variant	SLITRK1|p.H181R|1|0.68|ENSG00000178235|chr13:83880966-83880966|T/C|missense_variant	SLITRK1|p.H181R|1|0.68|ENSG00000178235|chr13:83880966-83880966|T/C|missense_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	545.3162231445312	2	545.318774	1088.623	-0.34335	-0.00018724	-3.7466	-0.0020431	-4.09	-0.0022303	545.3166020452929	101.61	1.0189	101.43	101.15	102.17	-0.17178					36	23	2	0	0	0	0.87448	1	12589	12589		34.173	5.023	1	1068300			91712	37901	63581	63688	102598	102598					0.08222889028479585
YVPLLPYLS	9	Unmodified	_YVPLLPYLS_					0	0	0			REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	REV__MFSD6|p.A649Sfs*18|1|0.27|ENSG00000151690|chr2:190497489-190497490|-/T|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	531.8168334960938	2	532.804968	1063.59538	-0.17713	-9.4378E-05	-4.3306	-0.0023073	-4.5077	-0.0024017	533.3038716094751	86.878	0.37903	86.878	86.605	86.984	0					14	8	2	0	0	0	0.024466	1	10917	10917		25.45	15.185	1	119930	+		91713	24788	63582	63689	102599	102599					0.06612985768219914
YVPNRVEP	8	Unmodified	_YVPNRVEP_					0	0	0			REV__ENST00000486637.1_1_1:38155869-38156178:-|nuORF	REV__ENST00000486637.1_1_1:38155869-38156178:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	486.30804443359375	2	487.258717	972.50288	0.0078872	3.8431E-06	3.2221	0.00157	3.23	0.0015738	487.2604035662934	20.783	0.48613	20.615	20.345	20.832	-0.16774					15	9	2	0	0	0	0.027866	1	563	563		73.975	0	1	92331	+		91714	33598	63583	63690	102600	102600					0.015529007547115725
YVPVMPGH	8	Unmodified	_YVPVMPGH_					0	0	0		ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6	ENSG00000033178|ENST00000322244|UBA6	ENSG00000033178|ENST00000322244|UBA6	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	450.9164123535156	2	450.225831	898.437109	-0.63452	-0.00028568	-2.6906	-0.0012114	-3.3251	-0.0014971	450.22459702075076	23.891	4.5522	23.844	21.869	26.422	-0.047148					187	104	3	0	0	0	0.027866	1	1055	1055		43.626	18.176	1	733280			91715	1023	63584	63691	102601	102601					-0.016172116918369284
YVQFNSYSD	9	Unmodified	_YVQFNSYSD_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-4|TASOR	REV__nc|ENSG00000163946|Q9UK61-4|TASOR	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	562.2975463867188	2	561.740554	1121.46655	-0.067697	-3.8028E-05	-1.436	-0.00080666	-1.5037	-0.00084469	561.7396632042352	58.39	0.34044	58.212	58.06	58.4	-0.17775					11	7	2	0	0	0	0.024436	1	6416	6416		30.504	3.8107	1	160160	+		91716	25663	63585	63692	102602	102602					-0.08932020932661544
YVRRWSRWFRK	11	Unmodified	_YVRRWSRWFRK_					0	0	0			REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	411.5630798339844	4	410.732472	1638.90078	0.10396	4.2698E-05	1.1504	0.00047252	1.2544	0.00051522	410.7329936396064	33.236	0.36392	33.036	32.73	33.094	-0.20019					10	8	2	0	0	0	0.024902	1	2316	2316		0.28643	0	1	62971	+		91717	33519	63586	63693	102603	102603					0.1068881440480709
YVSEELHKLY	10	Unmodified	_YVSEELHKLY_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	640.7775268554688	2	640.829703	1279.64485	0.78604	0.00050372	-2.5038	-0.0016045	-1.7178	-0.0011008	640.828473475325	51.805	0.1696	51.805	51.667	51.836	0					6	4	2	0	0	0	0.03519	1	5506	5506		26.693	0	1	67641	+		91718	27726	63587	63694	102604	102604					0.016216489863836614
YVSEWLVW	8	Unmodified	_YVSEWLVW_					0	0	0		ENST00000401088.8_1_1:16722851-16723172:+|nuORF	ENST00000401088.8_1_1:16722851-16723172:+|nuORF	ENST00000401088.8_1_1:16722851-16723172:+|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	541.2569580078125	2	541.271293	1080.52803	-1.1691	-0.00063278	-2.3114	-0.0012511	-3.4804	-0.0018839	541.2693594335669	48.526	0.2213	48.429	48.326	48.547	-0.097553					10	5	3	0	0	0	0.027866	1	4812	4812		69.093	0	1	127120			91719	13667	63588	63695	102605	102605					-0.009010444427076436
YVSGAAREEL	10	Unmodified	_YVSGAAREEL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	547.7789916992188	2	547.77747	1093.54039	-0.72621	-0.0003978	3.1356	0.0017176	2.4094	0.0013198	547.7789990554987	27.111	0.9263	26.954	26.464	27.391	-0.15664					47	21	3	0	0	0	0.45367	1	1440	1440		93.195	10.89	1	946560			91720	10947	63589	63696	102606	102606					-0.0026405277033063612
YVSGAAREEL	10	Unmodified	_YVSGAAREEL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	547.77747	1093.54039	-0.638	-0.00034948	3.1195	0.0017088	2.4815	0.0013593	547.7790242475494	27.153	0.76268	26.911	26.529	27.292	-0.24217	0.0061703	0.00014276	NaN	93.195	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	973410			91721	10947	63589	63696							-0.0026405277033063612
YVSGAAREEL	10	Unmodified	_YVSGAAREEL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	547.77747	1093.54039	-0.48405	-0.00026515	2.6645	0.0014596	2.1804	0.0011944	547.7788675404122	27.017	0.85064	26.849	26.379	27.23	-0.16816	-0.055899	-0.00035575	NaN	93.195	59	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	971220			91722	10947	63589	63696							-0.0026405277033063612
YVSLFETSF	9	Unmodified	_YVSLFETSF_					0	0	0		ENST00000286548.8_1_9:80334885-80335050:-|nuORF	ENST00000286548.8_1_9:80334885-80335050:-|nuORF	ENST00000286548.8_1_9:80334885-80335050:-|nuORF	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	546.2755737304688	2	546.76604	1091.51753	-0.46918	-0.00025653	-3.0026	-0.0016417	-3.4718	-0.0018983	546.7640077459334	73.217	0.4972	72.952	72.681	73.178	-0.26479					23	11	3	0	0	0	0.024294	1	8634	8634		45.952	0	1	403160			91723	11759	63590	63697	102607	102607					-0.02457071887829443
YVSLFVGFI	9	Unmodified	_YVSLFVGFI_					0	0	0		ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	522.3258666992188	2	522.791861	1043.56917	0.52473	0.00027433	-1.9965	-0.0010437	-1.4718	-0.00076942	522.7903684391658	82.193	0.24745	82.083	81.921	82.168	-0.11006					7	5	2	0	0	0	0.024497	1	10213	10213		28.254	0	1	219490			91724	8350	63591	63698	102608	102608					0.049127165967547626
YVSNFSKQL	9	Unmodified	_YVSNFSKQL_					0	0	0		nc|ENSG00000102445|Q9H714-3|RUBCNL;nc|ENSG00000102445|Q9H714-4|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL;ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;ENST00000487195.5_1_13:46917522-46924493:-|nuORF	nc|ENSG00000102445|Q9H714-3|RUBCNL	nc|ENSG00000102445|Q9H714-3|RUBCNL	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	543.802001953125	2	543.284931	1084.55531	-0.83473	-0.0004535	-1.1119	-0.00060407	-1.9466	-0.0010576	543.2832382243633	56.779	0.23811	56.779	56.571	56.809	0					13	6	3	0	0	0	0.024374	1	6352	6352		40.778	0	1	109730			91725	2408	63592	63699	102609	102609					0.016414390976706272
YVSTAKHVF	9	Unmodified	_YVSTAKHVF_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF;nc|ENSG00000184445|P50748-2|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	525.2871704101562	2	526.282192	1050.54983	0.54844	0.00028863	0.89042	0.00046861	1.4389	0.00075724	526.7850740203471	18.559	0.29752	18.402	18.197	18.495	-0.15637					6	5	2	0	0	0	0.024354	1	322	322		47.916	7.343	1	11433			91726	9339	63593	63700	102610	102610					0.026577603058512977
YVSVYEFSV	9	Unmodified	_YVSVYEFSV_					0	0	0		chr10:116889279-116901765|240|16.47|0.96|4.1|-|0|None,SHTN1|1	chr10:116889279-116901765|240|16.47|0.96|4.1|-|0|None,SHTN1|1	chr10:116889279-116901765|240|16.47|0.96|4.1|-|0|None,SHTN1|1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	546.7802734375	2	546.76604	1091.51753	-0.4765	-0.00026054	-2.7683	-0.0015136	-3.2448	-0.0017741	546.7641157049776	73.182	0.61909	72.905	72.669	73.288	-0.2769					22	14	2	0	0	0	0.024205	1	8643	8643		73.975	8.1716	1	341380			91727	299	63594	63701	102611	102611					-0.024570718878067055
YVTLVPLKSN	10	Unmodified	_YVTLVPLKSN_					0	0	0		ENST00000261313.2_1_12:118583083-118583359:+|nuORF	ENST00000261313.2_1_12:118583083-118583359:+|nuORF	ENST00000261313.2_1_12:118583083-118583359:+|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	567.3302001953125	2	567.331882	1132.64921	-0.43786	-0.00024841	-3.2506	-0.0018442	-3.6885	-0.0020926	567.329915602601	89.029	2.4496	89.045	87.596	90.045	0.015907					204	58	5	0	0	0	1.0719	1	11077	11077		36.447	1.2947	1	4134200			91728	11469	63595	63702	102612	102612					0.0881915819995811
YVTVADGKH	9	Unmodified	_YVTVADGKH_					0	0	0			REV__nc|ENSG00000143486|P41214-2|EIF2D	REV__nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	495.25775146484375	2	495.256174	988.497795	0.7843	0.00038843	2.4915	0.0012339	3.2758	0.0016224	495.2572795219513	17.936	0.39838	17.782	17.557	17.955	-0.15403					12	7	2	0	0	0	0.96906	1	247	247		26.693	1.1189	1	98384	+		91729	24255	63596	63703	102613	102613					0.0030859689209137287
YVVIEIRIA	9	Unmodified	_YVVIEIRIA_					0	0	0			REV__ENSG00000138336|ENST00000373644|TET1	REV__ENSG00000138336|ENST00000373644|TET1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	538.27783203125	2	538.329142	1074.64373	-1.0208	-0.00054955	3.0748	0.0016552	2.0539	0.0011057	538.331875563211	84.652	0.29041	84.677	84.456	84.747	0.025536					10	6	2	0	0	0	0.024506	1	10498	10498		30.504	8.5438	1	56906	+		91730	23842	63597	63704	102614	102614					0.10939479408125408
YVVMSVYFDL	10	Unmodified	_YVVMSVYFDL_					0	0	0		nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	nc|ENSG00000113327|P18507-1|GABRG2	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	411.90020751953125	3	412.538742	1234.5944	-1.3104	-0.00054059	2.5529	0.0010532	1.2425	0.00051258	412.53967236097816	28.701	0.4679	28.455	28.241	28.709	-0.24524					18	10	2	0	0	0	0.03519	1	1699	1699		41.427	28.469	1	116870			91731	3282	63598	63705	102615	102615					-0.013515966629711329
YVVPAGHS	8	Unmodified	_YVVPAGHS_					0	0	0			REV__nc|ENSG00000048991|Q15032|R3HDM1	REV__nc|ENSG00000048991|Q15032|R3HDM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	415.87890625	2	415.213778	828.413003	0.11951	4.9623E-05	0.12652	5.2531E-05	0.24603	0.00010215	415.213799342033	30.663	0.63009	30.513	30.259	30.89	-0.14952					22	14	2	0	0	0	0.027866	1	1967	1967		8.2313	0	1	307110	+		91732	20143	63599	63706	102616	102616					-0.008067288538541106
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	511.3075256347656	2	511.307678	1020.6008	0.097294	4.9747E-05	-0.58049	-0.00029681	-0.4832	-0.00024706	511.3071582341793	68.243	0.5831	67.951	67.588	68.171	-0.29266					43	14	4	0	0	0	0.11848	1	8139	8139		106.42	32.16	1	2255100			91733	4087	63600	63707	102617	102617					0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	511.3075866699219	2	511.307678	1020.6008	0.064148	3.2799E-05	-0.53354	-0.0002728	-0.46939	-0.00024	511.3072312323518	67.946	0.68863	67.965	67.549	68.237	0.018913					47	17	4	0	0	0	0.15889	1	8055	8055		97.473	34.166	1	2300700			91734	4087	63600	63707	102618	102618					0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_39_ClassI_Rep-1	1		2	511.307678	1020.6008	0.039868	2.0385E-05	-0.52374	-0.00026779	-0.48387	-0.00024741	511.30723425942324	67.89	0.7706	67.89	67.408	68.179	0	-0.019938	-5.7787E-06	NaN	106.42	50	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2411000			91735	4087	63600	63707							0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-1	4		2	511.307678	1020.6008	0.58931	0.00030132	-0.76184	-0.00038953	-0.17252	-8.8212E-05	511.30709068747063	68.176	0.48775	67.92	67.661	68.148	-0.25517	0.010643	-0.00024926	NaN	106.42	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617810			91736	4087	63600	63707							0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-2	5		2	511.307678	1020.6008	0.20928	0.000107	-0.25775	-0.00013179	-0.048471	-2.4783E-05	511.3073680067424	68.111	0.52203	67.878	67.636	68.158	-0.23375	-0.032101	0.00026623	NaN	106.42	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566740			91737	4087	63600	63707							0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OPSCC_40_ClassI_Rep-3	6		2	511.307678	1020.6008	0.17913	9.1593E-05	-0.36451	-0.00018638	-0.18538	-9.4784E-05	511.30728006042386	68.094	0.52064	67.855	67.549	68.07	-0.23814	-0.054258	0.00015705	NaN	106.42	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596260			91738	4087	63600	63707							0.09132709350706136
YVVQIPKDP	9	Unmodified	_YVVQIPKDP_					0	0	0			REV__ENSG00000067992|ENST00000379162|PDK3	REV__ENSG00000067992|ENST00000379162|PDK3	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	529.7994384765625	2	529.797675	1057.5808	-0.86681	-0.00045924	3.995	0.0021165	3.1282	0.0016573	529.799589946442	83.416	1.702	83.442	83.046	84.748	0.02655					102	39	4	0	0	0	0.14024	1	10354	10354		101.6	0.34809	1	5869600	+		91739	20369	63601	63708	102619	102619					0.05430913620079991
YVVVTASL	8	Unmodified	_YVVVTASL_					0	0	0			REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	REV__UNC5D|p.A836Rfs*31|1|0.17|ENSG00000156687|chr8:35774322-35774323|-/T|frameshift_variant	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	426.2461242675781	2	426.247286	850.48002	-0.42493	-0.00018113	-2.4071	-0.001026	-2.832	-0.0012071	426.2461978843956	89.569	1.9508	89.407	88.263	90.214	-0.1626					72	46	2	0	0	0	1.0572	1	10948	10948		28.254	0	1	716840	+		91740	25087	63602	63709	102620	102620					0.04879881637236849
YVWLIFTEI	9	Unmodified	_YVWLIFTEI_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	593.2930908203125	2	592.323525	1182.6325	0.21353	0.00012648	1.7179	0.0010176	1.9315	0.0011441	592.3233166456915	60.018	0.52173	59.821	59.537	60.059	-0.19742					21	13	2	0	0	0	0.024517	1	6627	6627		26.796	0	1	177610	+		91741	25824	63603	63710	102621	102621					0.04848657313982585
YVWMLDAE	8	Unmodified	_YVWMLDAE_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	512.8059692382812	2	513.733686	1025.45282	0.86591	0.00044485	-4.2965	-0.0022072	-3.4305	-0.0017624	513.730887267953	70.795	0.50668	70.502	70.411	70.918	-0.29291					15	11	2	0	0	0	0.027866	1	8560	8560		28.254	9.1508	1	67705			91742	3693	63604	63711	102622	102622					-0.0588896996546282
YVYAVFGF	8	Unmodified	_YVYAVFGF_					0	0	0		ENSG00000136404|ENST00000322019|TM6SF1;nc|ENSG00000136404|Q9BZW5-2|TM6SF1;ENST00000564988.5_1_15:83776528-83788831:+|nuORF	ENSG00000136404|ENST00000322019|TM6SF1	ENSG00000136404|ENST00000322019|TM6SF1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	482.777099609375	2	483.242004	964.469455	-0.50397	-0.00024354	-0.36751	-0.00017759	-0.87148	-0.00042114	483.2416161069228	44.659	0.76286	44.696	44.41	45.173	0.0369					54	21	4	0	0	0	0.027866	1	4256	4256		33.493	5.6107	1	2413000			91743	5015	63605	63712	102623	102623					-0.014201010171973394
YVYEYLLHV	9	Unmodified	_YVYEYLLHV_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	599.8101196289062	2	599.810782	1197.60701	-1.2754	-0.00076501	1.216	0.00072937	-0.059422	-3.5642E-05	599.8114411755344	76.592	2.1385	76.592	76.308	78.447	0					127	51	6	0	0	0	0.013834	7	9437	9428;9437;9448;9461;9473;9487;9497		180.49	117.87	1	10696000			91744	5825	63606	63713	102624;102625;102626;102627;102628;102629;102630	102625					0.016111827915665344
YVYEYLLHV	9	Unmodified	_YVYEYLLHV_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	599.8106689453125	2	599.810782	1197.60701	-0.9619	-0.00057696	0.61005	0.00036591	-0.35185	-0.00021104	599.8109944585009	76.774	1.8159	76.546	76.081	77.897	-0.22843					112	43	5	0	0	0	0.013834	7	9459	9414;9424;9435;9447;9459;9471;9486		180.49	117.87	1	10785000			91745	5825	63606	63713	102631;102632;102633;102634;102635;102636;102637	102635					0.016111827915665344
YVYEYLLHV	9	Unmodified	_YVYEYLLHV_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	599.8097534179688	2	599.810782	1197.60701	-0.7565	-0.00045376	0.32043	0.0001922	-0.43607	-0.00026156	599.8109220476343	76.598	2.3127	76.61	76.205	78.517	0.011642					142	55	6	0	0	0	0.013834	6	9347	9347;9359;9371;9383;9395;9409		180.49	132.84	1	10363000			91746	5825	63606	63713	102638;102639;102640;102641;102642;102643	102638					0.016111827915665344
YVYEYLLHV	9	Unmodified	_YVYEYLLHV_					0	0	0		nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3	nc|ENSG00000145687|P81877-2|SSBP2	nc|ENSG00000145687|P81877-2|SSBP2	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	599.810302734375	2	599.810782	1197.60701	-0.30766	-0.00018454	-0.44827	-0.00026888	-0.75593	-0.00045341	599.8106037410603	76.543	0.72084	76.374	76.138	76.859	-0.16854					37	16	3	0	0	0	0.040175	2	9071	9071;9081		133.47	77.965	1	1344000			91747	5825	63606	63713	102644;102645	102644					0.016111827915665344
YVYLEHID	8	Unmodified	_YVYLEHID_					0	0	0			REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	REV__DOCK3|p.P1852Qfs*45|1|0.25|ENSG00000088538|chr3:51380173-51380173|C/-|frameshift_variant	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	525.2960815429688	2	526.258382	1050.50221	-1.0919	-0.00057461	2.9671	0.0015614	1.8752	0.00098682	526.2598776424798	81.153	0.59726	81.022	80.741	81.339	-0.13075					25	14	2	0	0	0	0.027866	1	10056	10056		28.254	0	1	466190	+		91748	19699	63607	63714	102646	102646					-0.021019386850184674
YVYLFFLCLN	10	Unmodified	_YVYLFFLCLN_					0	0	0			REV__ENST00000504704.6_1_4:159690364-159754995:+|nuORF	REV__ENST00000504704.6_1_4:159690364-159754995:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	432.9154357910156	3	432.222866	1293.64677	-0.46672	-0.00020173	3.7348	0.0016143	3.2681	0.0014125	432.2239934863413	32.643	0.48281	32.655	32.45	32.933	0.011795					28	12	4	0	0	0	0.03519	1	2253	2253		14.086	3.0878	1	146780	+		91749	33990	63608	63715	102647	102647					0.011689864706568187
YVYYADSD	8	Unmodified	_YVYYADSD_					0	0	0			REV__nc|ENSG00000113721|P09619-2|PDGFRB	REV__nc|ENSG00000113721|P09619-2|PDGFRB	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	498.7581787109375	2	498.203273	994.391992	-1.4964	-0.00074551	-1.5213	-0.0007579	-3.0177	-0.0015034	498.2023858335376	33.869	0.73783	33.693	33.43	34.168	-0.17557					39	18	3	0	0	0	0.027866	1	2503	2503		42.474	8.9815	1	765090	+		91750	22085	63609	63716	102648	102648					-0.10542783744051576
YWEPKNRLNI	10	Unmodified	_YWEPKNRLNI_					0	0	0			REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2	REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	445.6361999511719	3	444.906816	1331.69862	0.33291	0.00014811	-3.4518	-0.0015357	-3.1189	-0.0013876	444.90529968250934	40.327	0.58157	40.215	39.94	40.521	-0.11223					33	15	3	0	0	0	0.03519	1	3538	3538		19.263	6.3052	1	391450	+		91751	20319	63610	63717	102649	102649					0.046038662087539706
YWEPKNRLNI	10	Unmodified	_YWEPKNRLNI_					0	0	0			REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2	REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	445.6358947753906	3	444.906816	1331.69862	-0.56439	-0.0002511	-1.9468	-0.00086613	-2.5112	-0.0011172	444.90575579937445	40.493	0.52219	40.516	40.275	40.797	0.023006					30	14	3	0	0	0	0.03519	1	3481	3481		40.058	13.308	1	355640	+		91752	20319	63610	63717	102650	102650					0.046038662087539706
YWLRVHGF	8	Unmodified	_YWLRVHGF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.7637939453125	2	539.285069	1076.55558	-1.016	-0.0005479	-1.6729	-0.00090219	-2.6889	-0.0014501	539.2840992601589	31.678	0.39982	31.746	31.527	31.927	0.068962					16	9	2	0	0	0	0.027866	1	2060	2060		20.482	0	1	444140	+		91753	25715	63611	63718	102651	102651					0.02036903608177454
YWVVTAVFL	9	Unmodified	_YWVVTAVFL_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	549.302978515625	2	549.305136	1096.59572	-0.55003	-0.00030213	-3.5921	-0.0019732	-4.1422	-0.0022753	549.3031405933436	78.762	1.7147	78.762	78.363	80.078	0					126	40	6	0	0	0	0.52323	1	9776	9776		57.811	1.0902	1	13542000			91754	5185	63612	63719	102652	102652					0.05128405488062526
YWVVTAVFL	9	Unmodified	_YWVVTAVFL_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	549.30322265625	2	549.305136	1096.59572	-0.59819	-0.00032859	-3.5038	-0.0019246	-4.102	-0.0022532	549.3031841848409	78.78	1.6602	78.798	78.441	80.101	0.018677					119	39	6	0	0	0	0.40179	1	9670	9670		65.803	3.6958	1	13961000			91755	5185	63612	63719	102653	102653					0.05128405488062526
YYDIVEINTIY	11	Unmodified	_YYDIVEINTIY_					0	0	0			REV__ENST00000605265.1_1_10:112661227-112661341:-|nuORF	REV__ENST00000605265.1_1_10:112661227-112661341:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	469.232177734375	3	469.234376	1404.6813	-1.3936	-0.00065394	-3.6485	-0.001712	-5.0421	-0.0023659	469.23268790876375	25.973	0.73346	25.809	25.5	26.234	-0.16331					52	20	4	0	0	0	1.0327	1	1255	1255		29.551	1.9068	1	1317900	+		91756	35916	63613	63720	102654	102654					-0.004855189075442468
YYDTFGFNL	9	Unmodified	_YYDTFGFNL_					0	0	0			REV__CON__P15636	REV__CON__P15636	MULTI-SECPEP	OPSCC_40_ClassI_Rep-3	6	569.2677612304688	2	570.25584	1138.49713	1.8265	0.0010416	1.765	0.0010065	3.5915	0.0020481	570.2565808019513	23.522	0.15134	23.331	23.209	23.36	-0.19117					5	3	2	0	0	0	0.024427	1	912	912		26.693	0	1	31704	+	+	91757	19553	63614	63721	102655	102655					-0.06658242547609916
YYERNHMSN	9	Unmodified	_YYERNHMSN_					0	0	0			REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	404.8880615234375	3	405.173345	1212.49821	0.79103	0.0003205	3.1767	0.0012871	3.9677	0.0016076	405.17451017238733	22.678	0.92724	22.489	22.147	23.074	-0.18894					44	19	4	0	0	0	0.024503	1	800	800		31.634	12.372	1	81958	+		91758	21282	63615	63722	102656	102656					-0.09954351450346621
YYFAVKTL	8	Unmodified	_YYFAVKTL_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	502.7744140625	2	502.776211	1003.53787	0.26803	0.00013476	-4.3811	-0.0022027	-4.1131	-0.002068	502.7738517661705	90.274	0.74262	90.287	90.043	90.785	0.013443					40	17	3	0	0	0	0.53523	1	11334	11334		82.305	10.428	1	990980			91759	1432	63616	63723	102657	102657					0.0362414356266072
YYFILLTL	8	Unmodified	_YYFILLTL_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	523.3035278320312	2	523.302062	1044.58957	-0.67907	-0.00035536	3.1861	0.0016673	2.507	0.0013119	523.3036531837259	85.156	2.651	85.182	83.64	86.291	0.025536					197	62	4	0	0	0	0.95417	1	10644	10644		44.531	13.001	1	2957200	+		91760	27885	63617	63724	102658	102658					0.06905887256561982
YYFILLTL	8	Unmodified	_YYFILLTL_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	523.3037719726562	2	523.302062	1044.58957	0.12304	6.4388E-05	2.6416	0.0013824	2.7647	0.0014468	523.3033201727457	85.376	2.6332	85.181	83.7	86.333	-0.19508					230	61	5	0	0	0	0.95417	4	10364	10364;10375;10387;10401		44.531	10.359	1	3963900	+		91761	27885	63617	63724	102659;102660;102661;102662	102659					0.06905887256561982
YYFILLTL	8	Unmodified	_YYFILLTL_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	523.30322265625	2	523.302062	1044.58957	0.82974	0.00043421	1.7879	0.0009356	2.6176	0.0013698	523.3028490576096	85.369	2.5474	85.219	83.766	86.313	-0.14967					193	59	4	0	0	0	0.95417	1	10398	10398		44.531	13.001	1	3893600	+		91762	27885	63617	63724	102663	102663					0.06905887256561982
YYFILLTL	8	Unmodified	_YYFILLTL_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	523.3033447265625	2	523.302062	1044.58957	0.50944	0.00026659	2.1609	0.0011308	2.6703	0.0013974	523.3030411118597	85.391	2.8871	85.253	83.425	86.312	-0.13753					237	67	5	0	0	0	0.85409	2	10363	10363;10376		54.765	13.987	1	3714800	+		91763	27885	63617	63724	102664;102665	102664					0.06905887256561982
YYGPLRSV	8	Unmodified	_YYGPLRSV_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	477.7559814453125	2	477.75581	953.497067	-0.078979	-3.7733E-05	-0.025999	-1.2421E-05	-0.10498	-5.0154E-05	477.75560120510926	49.421	0.64706	49.142	48.825	49.472	-0.27977					38	16	3	0	0	0	0.6536	1	4967	4967		71.296	28.821	1	1484400			91764	3170	63618	63725	102666	102666					0.018458022430536403
YYGVDANVTL	10	Unmodified	_YYGVDANVTL_					0	0	0			REV__ENST00000538437.5_1_11:72466777-72492157:-|nuORF	REV__ENST00000538437.5_1_11:72466777-72492157:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	557.796142578125	2	557.774396	1113.53424	0.18125	0.0001011	3.7432	0.0020879	3.9245	0.002189	557.776760237438	39.409	0.27534	39.409	39.219	39.495	0					11	7	2	0	0	0	0.03519	1	3375	3375		82.241	12.613	1	130080	+		91765	28780	63619	63726	102667	102667					-0.017985710018592727
YYIFILIG	8	Unmodified	_YYIFILIG_					0	0	0			REV__ENST00000591863.1_2_19:33461934-33462189:-|nuORF	REV__ENST00000591863.1_2_19:33461934-33462189:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	501.29058837890625	2	501.288954	1000.56336	0.34699	0.00017394	2.5507	0.0012787	2.8977	0.0014526	501.29016165917204	85.384	3.6874	85.189	84.219	87.906	-0.19508					265	87	4	0	0	0	1.0241	1	10411	10411		33.493	1.9632	1	10557000	+		91766	35733	63620	63727	102668	102668					0.06309618085106194
YYIGFLPSL	9	Unmodified	_YYIGFLPSL_					0	0	0			REV__ENST00000472447.1_1_1:220953498-220955240:+|nuORF	REV__ENST00000472447.1_1_1:220953498-220955240:+|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	537.7771606445312	2	536.789318	1071.56408	-0.71824	-0.00038554	3.4959	0.0018765	2.7776	0.001491	536.7911453223891	19.94	0.77951	19.94	19.689	20.468	0					34	15	3	0	0	0	0.024443	1	511	511		35.201	6.0307	1	202320	+		91767	22374	63621	63728	102669	102669					0.031164127341526182
YYKKRTHIL	9	Unmodified	_YYKKRTHIL_					0	0	0			REV__nc|ENSG00000184617|A6NDX5|ZNF840P	REV__nc|ENSG00000184617|A6NDX5|ZNF840P	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	611.3551635742188	2	611.358765	1220.70298	-0.32068	-0.00019605	-3.9143	-0.002393	-4.2349	-0.0025891	611.3562523759201	94.183	2.8128	94.183	93.288	96.101	-0.00022888					256	66	5	0	0	0	0.87448	1	11901	11901		34.173	3.6037	1	11218000	+		91768	37011	63622	63729	102670	102670					0.1014537542234848
YYKQQLKKAL	10	Unmodified	_YYKQQLKKAL_					0	0	0			REV__ENST00000555843.5_1_14:31581697-31582359:-|nuORF	REV__ENST00000555843.5_1_14:31581697-31582359:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	641.8825073242188	2	641.87953	1281.74451	0.89146	0.00057221	3.5954	0.0023078	4.4869	0.00288	641.8817354579992	95.84	3.2638	95.842	95.007	98.271	0.0020752					209	75	3	0	0	0	1.1237	1	12138	12138		23.042	0.46283	1	2810000	+		91769	35018	63623	63730	102671	102671					0.11490511391002656
YYLSPEICQ	9	Unmodified	_YYLSPEICQ_					0	0	0		nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	nc|ENSG00000197168|Q6P3R8|NEK5	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	559.2169189453125	2	558.257525	1114.5005	-0.85071	-0.00047492	3.708	0.00207	2.8573	0.0015951	558.2594700634083	44.068	0.35422	43.963	43.78	44.134	-0.10468					16	9	2	0	0	0	0.024209	1	4058	4058		76.774	17.992	1	228330			91770	9967	63624	63731	102672	102672					-0.05217315765275998
YYLVLQRRK	9	Unmodified	_YYLVLQRRK_					0	0	0			REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF	REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-1	1	619.869384765625	2	619.87204	1237.72953	-0.39228	-0.00024317	-3.8743	-0.0024016	-4.2666	-0.0026447	619.8694977172748	94.261	2.8888	94.261	93.345	96.234	0					269	68	5	0	0	0	0.78069	1	12040	12040		40.573	1.7665	1	4658300	+		91771	31907	63625	63732	102673	102673					0.1201706431365892
YYLVLQRRK	9	Unmodified	_YYLVLQRRK_					0	0	0			REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF	REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-3	3	619.8693237304688	2	619.87204	1237.72953	-1.0156	-0.00062956	-3.2113	-0.0019906	-4.2269	-0.0026202	619.8698954544334	94.228	2.9288	94.234	93.349	96.278	0.0059814					281	69	5	0	0	0	0.88411	1	11971	11971		33.516	8.9964	1	4459000	+		91772	31907	63625	63732	102674	102674					0.1201706431365892
YYLYIPLT	8	Unmodified	_YYLYIPLT_					0	0	0			REV__ENST00000225728.7_1_17:6547672-6547756:-|nuORF	REV__ENST00000225728.7_1_17:6547672-6547756:-|nuORF	MULTI-SECPEP	OPSCC_39_ClassI_Rep-2	2	523.303955078125	2	523.283869	1044.55318	-0.23576	-0.00012337	-3.7495	-0.0019621	-3.9853	-0.0020854	523.2817030767688	90.397	0.99375	90.381	90.077	91.07	-0.016716					34	23	2	0	0	0	0.027866	1	11376	11376		14.664	0	1	406170	+		91773	29376	63626	63733	102675	102675					0.032690103598497444
YYNLPGTL	8	Unmodified	_YYNLPGTL_					0	0	0			REV__ENSG00000105131|ENST00000221730|EPHX3	REV__ENSG00000105131|ENST00000221730|EPHX3	MULTI-SECPEP	OPSCC_40_ClassI_Rep-1	4	471.3040466308594	2	470.742368	939.470183	1.1214	0.00052788	-0.060053	-2.827E-05	1.0613	0.00049961	470.7425349607009	18.159	0.24489	18.002	17.854	18.099	-0.15637					6	4	2	0	0	0	0.027866	1	252	252		33.516	11.813	1	9954.9	+		91774	21494	63627	63734	102676	102676					-0.001973063681361964
YYPPKAKL	8	Unmodified	_YYPPKAKL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	490.2580261230469	2	490.284203	978.553853	-0.12416	-6.0876E-05	2.1021	0.0010306	1.978	0.00096976	490.2844722521879	104.98	0.22147	104.98	104.85	105.07	-0.0015945					11	7	2	0	0	0	0.027866	1	13384	13384		28.254	1.4582	1	31091	+		91775	37247	63628	63735	102677	102677					0.06371849799552365
YYPPLAVD	8	Unmodified	_YYPPLAVD_					0	0	0			REV__ENSG00000100346|ENST00000402142|CACNA1I;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__ENSG00000100346|ENST00000402142|CACNA1I	MULTI-SECPEP	OPSCC_39_ClassI_Rep-1	1	468.30535888671875	2	469.236919	936.459284	-0.072978	-3.4244E-05	-4.3507	-0.0020415	-4.4236	-0.0020757	469.23463329987453	53.177	0.36376	53.177	52.938	53.302	0					14	9	2	0	0	0	0.027866	1	5739	5739		29.842	8.1392	1	186950	+		91776	21095;36517	63629	63736	102678	102678					-0.01148708742425697
YYQCCPTL	8	Unmodified	_YYQCCPTL_					0	0	0			REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|43|2|sense	REV__L1PA6_dup546|chr2:49227587-49231532:-|1.7222309236221944|0.2927699401366612|2.56|522.0|43|2|sense	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	495.77655029296875	2	495.706614	989.398675	-0.76862	-0.00038101	-2.9435	-0.0014591	-3.7121	-0.0018401	495.7050096159537	27.795	0.6178	27.626	27.23	27.847	-0.16816					31	14	3	0	0	0	0.027866	1	1585	1585		57.811	33.609	1	148210	+		91777	36257	63630	63737	102679	102679					-0.09644885388672719
YYQSCCTDY	9	Unmodified	_YYQSCCTDY_					0	0	0		ENSG00000109072|ENST00000226218|VTN	ENSG00000109072|ENST00000226218|VTN	ENSG00000109072|ENST00000226218|VTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-1	4	573.1974487304688	2	573.19935	1144.38415	-0.13566	-7.7762E-05	-3.464	-0.0019856	-3.5997	-0.0020633	573.1972119067755	33.002	0.97461	32.771	32.423	33.397	-0.23107					63	23	4	0	0	0	0.59099	1	2328	2328		53.351	7.3995	1	2951600			91778	2959	63631	63738	102680	102680					-0.18227002327466835
YYQSCCTDY	9	Unmodified	_YYQSCCTDY_					0	0	0		ENSG00000109072|ENST00000226218|VTN	ENSG00000109072|ENST00000226218|VTN	ENSG00000109072|ENST00000226218|VTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	573.1973876953125	2	573.19935	1144.38415	0.0027895	1.5989E-06	-3.8032	-0.00218	-3.8004	-0.0021784	573.1971180359283	32.993	0.83675	32.793	32.449	33.286	-0.20019					61	20	5	0	0	0	0.59099	2	2304	2304;2314		53.351	10.955	1	3349100			91779	2959	63631	63738	102681;102682	102681					-0.18227002327466835
YYQSCCTDY	9	Unmodified	_YYQSCCTDY_					0	0	0		ENSG00000109072|ENST00000226218|VTN	ENSG00000109072|ENST00000226218|VTN	ENSG00000109072|ENST00000226218|VTN	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	573.1969604492188	2	573.19935	1144.38415	-0.33814	-0.00019382	-3.3422	-0.0019157	-3.6803	-0.0021096	573.197271038341	32.579	0.76499	32.421	32.121	32.886	-0.15772					43	18	3	0	0	0	0.4752	1	2243	2243		60.972	13.056	1	1771000			91780	2959	63631	63738	102683	102683					-0.18227002327466835
YYRAEEYLLSF	11	Unmodified	_YYRAEEYLLSF_					0	0	0			REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	REV__nc|ENSG00000153885|Q96SI1-2|KCTD15	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	485.2369384765625	3	485.23812	1452.69253	-0.25347	-0.00012299	-2.7239	-0.0013217	-2.9773	-0.0014447	485.2369644273229	35.35	0.75624	35.163	34.798	35.554	-0.18675					62	19	4	0	0	0	1.0123	1	2659	2659		34.087	3.5176	1	2347100	+		91781	24915	63632	63739	102684	102684					-0.015706968134509225
YYRLQPSIKAR	11	Unmodified	_YYRLQPSIKAR_					0	0	0		nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4	nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	MULTI-SECPEP	OPSCC_40_ClassI_Rep-2	5	465.8025207519531	3	465.601616	1393.78302	-0.38558	-0.00017953	0.094238	4.3877E-05	-0.29135	-0.00013565	465.60160531147227	28.938	0.43059	28.769	28.554	28.985	-0.16897					17	9	2	0	0	0	0.024723	1	1705	1705		25.068	0	1	38405			91782	6305	63633	63740	102685	102685					0.10187817025507684
YYSAKPRR	8	Unmodified	_YYSAKPRR_					0	0	0			REV__ENST00000265195.9_1_5:138532194-138534000:-|nuORF	REV__ENST00000265195.9_1_5:138532194-138534000:-|nuORF	MULTI-MSMS	OPSCC_39_ClassI_Rep-2	2	520.7852783203125	2	520.785433	1039.55631	-0.089111	-4.6408E-05	-3.4678	-0.001806	-3.5569	-0.0018524	520.7840714436154	105.85	0.58363	105.85	105.4	105.99	-0.0013123					29	20	2	0	0	0	0.97924	1	13540	13540		40.573	2.7611	1	160800	+		91783	29735	63634	63741	102686	102686					0.0381169825723191
YYSAKPRR	8	Unmodified	_YYSAKPRR_					0	0	0			REV__ENST00000265195.9_1_5:138532194-138534000:-|nuORF	REV__ENST00000265195.9_1_5:138532194-138534000:-|nuORF	MULTI-MSMS	OPSCC_40_ClassI_Rep-2	5	520.784423828125	2	520.785433	1039.55631	-0.95637	-0.00049807	-1.4948	-0.00077845	-2.4511	-0.0012765	520.7845520757019	106.87	1.0387	106.73	106.29	107.33	-0.1346					164	45	6	0	0	0	1.0574	1	13304	13304		26.796	0.10319	1	3485700	+		91784	29735	63634	63741	102687	102687					0.0381169825723191
YYSLKESTT	9	Unmodified	_YYSLKESTT_					0	0	0		nc|ENSG00000165629|P36542-2|ATP5F1C;ENST00000493053.5_1_10:7830135-7848940:+|nuORF;ENSG00000165629|ENST00000356708|ATP5F1C	nc|ENSG00000165629|P36542-2|ATP5F1C	nc|ENSG00000165629|P36542-2|ATP5F1C	MULTI-MSMS	OPSCC_40_ClassI_Rep-3	6	546.2650146484375	2	546.266404	1090.51826	-1.4789	-0.00080788	-0.95126	-0.00051964	-2.4302	-0.0013275	546.2659117927758	26.068	1.7547	25.905	25.716	27.471	-0.16331					121	45	4	0	0	0	0.83071	1	1258	1258		37.159	0	1	25122000			91785	7440	63635	63742	102688	102688					-0.023382772387549267
YYYMGVDAV	9	Unmodified	_YYYMGVDAV_					0	0	0		ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-SECPEP	OPSCC_39_ClassI_Rep-3	3	539.816162109375	2	540.738968	1079.46338	-0.92126	-0.00049816	0.21489	0.0001162	-0.70637	-0.00038196	540.7393921527467	41.035	0.28041	41.058	40.83	41.111	0.023006					12	7	2	0	0	0	0.024497	1	3588	3588		13.775	0	1	43052			91786	795	63636	63743	102689	102689					-0.073169873110146